LOCUS       XM_032645290            3316 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NAD kinase (NADK), transcript variant X1,
            mRNA.
ACCESSION   XM_032645290
VERSION     XM_032645290.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3316
                     /gene="NADK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760436"
     CDS             168..1787
                     /gene="NADK"
                     /codon_start=1
                     /product="NAD kinase isoform X1"
                     /protein_id="XP_032501181.1"
                     /db_xref="GeneID:116760436"
                     /translation="MSVPIFTSIWKLNFSLRTKYVGFGQCFIGTGLKRRLFAGHGVQW
                     VPAGGLIRPPRFSGRSPPRPSTTEMEQETVSGSAELRAEAASYRCSACHGDEDWGLGH
                     PIRGRAKSRSLSAAPTLASTREFRRTRSLHGPCPVTTFGPKACVLQNPQTIMHIQDPA
                     SQRLTWNKSPKSVLVIKKIRDASLLQPFKELCVYLMEENNMIVYVEKKVLEDPAIVSD
                     DRFGPVKRKFCTFREDYDDISNQIDLIICLGGDGTLLYASSLFQGSVPPVMAFHLGSL
                     GFLTPFNFENFQSQVTQVIQGNAAVVLRSRLKVRVVKELRGKKVAVPNGISENGVLAA
                     ALDAEVGKQVMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDACPAGVIVSTP
                     TGSTAYAAAAGASMIHPNVPAIMLTPICPHSLSFRPIVVPAGVELKIMLSPEARNTVW
                     VSFDGRKRQEVRHGDSISITTSRYPLPSICVRDPVSDWFESLAQCLHWNVRKKQAHFA
                     EDEEDAHEEDGAGRAGSQACGPAVCTRDGRT"
     misc_feature    <651..1679
                     /gene="NADK"
                     /note="bifunctional NADP phosphatase/NAD kinase; Region:
                     pnk; cl28462"
                     /db_xref="CDD:333282"
ORIGIN      
        1 cagaggccat ggctcacggg cccagccgct ccgcggcatg tgggatcctc ccggaccggg
       61 gcacgaaccc gtgtcccctg catcggcagg cggactccca accactgagc caccagggaa
      121 gccctctgct tccatctttt cctgctttac tatgttgtgg ttagaagatg agcgtgccta
      181 tctttactag tatttggaag ttgaactttt ctttgaggac caagtacgtt ggttttggcc
      241 agtgtttcat tggcactgga ttaaagcgca ggctgtttgc aggacatgga gttcagtggg
      301 tgcctgctgg tggtcttatc aggcctccgc ggttttcggg ccgaagtcct cctcgtccat
      361 cgactacaga aatggaacaa gaaacagtca gcgggagtgc ggagctgcgt gcagaggcgg
      421 cctcctaccg ctgctccgcg tgccatggtg acgaggactg gggcctgggc caccccatcc
      481 ggggccgcgc caagtcccgc agcctgtcgg ccgcgcccac cctggccagc acccgcgagt
      541 tcaggaggac ccgctcgcta cacgggccgt gcccagtgac cacttttgga ccaaaggcct
      601 gcgtgctgca gaatccccag accatcatgc acatccagga ccctgccagc cagcggctga
      661 cgtggaacaa gtccccaaag agcgtcctcg tcatcaagaa gatccgggac gccagcctgc
      721 tccagccctt caaggagctc tgcgtgtacc tgatggagga aaacaacatg atcgtgtacg
      781 tggagaagaa ggttctggag gaccccgcca tcgtgagcga tgaccgcttt gggccagtga
      841 agaggaagtt ctgcaccttc agagaagatt acgatgacat ctccaaccag attgatctca
      901 tcatttgcct gggaggagac gggaccctgc tgtacgcctc gtcgctcttc cagggcagcg
      961 tgcctccggt catggcgttc cacctgggct ccctgggctt cctgaccccc ttcaacttcg
     1021 agaactttca gtcccaagtt actcaggtga tacaggggaa cgcagctgtt gttctccgga
     1081 gccggctgaa ggtcagggtt gtgaaggagc tccgagggaa gaaggtggcc gtccccaacg
     1141 ggatcagtga gaacggggtg ctggccgcag ccctggacgc agaggtcggg aagcaggtca
     1201 tgcagtacca ggtcttaaac gaggtggtga tagacagagg cccatcctca tacctgtcca
     1261 acgtggacgt ctacctggat gggcacctca tcaccacggt gcagggcgac gcctgtcccg
     1321 caggcgtgat cgtctccacc ccaacgggta gcacagcgta cgcagccgcc gccggggcct
     1381 ccatgatcca ccccaacgtg ccggccatca tgctcacgcc catctgcccc cactcgctgt
     1441 ccttccggcc catcgtggtt cctgcagggg tcgagctgaa gatcatgctg tcaccggaag
     1501 caaggaacac tgtgtgggtg tccttcgatg gacgaaagag acaggaggtc cgccacggag
     1561 acagcatcag catcactacc tctcgctacc cgctcccctc catctgtgtc cgcgaccccg
     1621 tgagcgactg gtttgagagc ctggcacagt gtctgcactg gaacgtgcgg aagaagcaag
     1681 cccacttcgc ggaggacgag gaggatgcgc acgaggagga tggggcgggg cgggcgggga
     1741 gccaggcctg cggtcctgcc gtctgcactc gcgacgggcg gacctgagtg cgtcgtgagc
     1801 gccacgggcc cagcgccagt ggcaggtgcc gcaccacatg tctggccaga ggaagggcct
     1861 gcaatctgcc ttttgttgac cagatcagct gtttttaacg ttttaaatct gacttttctg
     1921 catttctaaa caagtgagca gaccaggagc tctgaggtca gcccaggcgc actcaccctg
     1981 cgtgtggaca gagcccggcc ccaggcaggg acggccgagc ctggtgggct ccttgtagtt
     2041 ccttgtgagg aaacttccat aaatcagtct actgagattc agaggggatc agaatgaatg
     2101 ggtctatcct atggtcttga aaataaatgt ctcacggcca aaaatccttc agctcccacg
     2161 acttcccctg aagccactcg gggggacgct tctgccgaga gcaggttggc tgccaggaca
     2221 gatgggtccc caggccccgg tctcctcccc cgcttcaggg tgaccggcac tggcgggacg
     2281 agggttcaga ccgcacacat tcctcgggaa gcagggacgc acctccccac cctggaaggt
     2341 gttctcgatt ctgtgtctac tttttagaga ttcttttaaa ctttctgaaa gtgcttacgt
     2401 acagattttg ttgtgtacac tttgagaatt cggcgagaag ggagtttgtg ccgtgaagtg
     2461 ggaccatccg gtgcagcccg cgcgaccgcc cggagagctg ggcgacttgc tcagagcgcc
     2521 tggcgctccg cgggccggga ggggttgaag cggctcttgc ttctccccag gggcctggct
     2581 tcgagggcgt gcccgtcggt ccagcccccg cgcctccatc gctggctgcc tggggctggg
     2641 gccgcctgga gtctggtggg agcagtggct cgcggggggc gtgtggccct ggccccgctt
     2701 actgtcgcct aacgggcttc ctatttttga gtaactgatt tctctctgag ttgcattttc
     2761 tcctgttaaa ttggccagaa cagaagggat gggggcccgt catttcttgg acttcctcct
     2821 ggagggacag gggccggggg gcgctgtgct ttgcccgctt ggagtgtcac gggctgatgg
     2881 aagggcatcc agggtcccag ggcaggccct gcggcctgag cgccgtggcc accgtccgtg
     2941 tgtgtaccaa gtgctgctgc ctcgcgtgcc tgtgtgggcg gctcagccgg tgctgggcac
     3001 agaggtcggt tcccaccctc tgcccgcgag ttcgggcaca gtgggcagcc cgctcagcct
     3061 cccgtgggct gagggggcga cactcccagc tttaggccca gaagagagtg gcattcagaa
     3121 cacaggttac tcgttcagac aacagagcca gtgtagacca agtcctgaag cgtgacaggg
     3181 aatgaactag gaaattttgg gtttttgaaa tcaattctta atgtttcata ttgttaatat
     3241 cttgaaaatt tgttaaatgt tgaaagcctt attactattt tcagattctt tcaataaaca
     3301 ggcttgttta aaaagt
//
LOCUS       XM_032645294            3301 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NAD kinase (NADK), transcript variant X2,
            mRNA.
ACCESSION   XM_032645294
VERSION     XM_032645294.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3301
                     /gene="NADK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 15 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760436"
     CDS             165..1772
                     /gene="NADK"
                     /codon_start=1
                     /product="NAD kinase isoform X2"
                     /protein_id="XP_032501185.1"
                     /db_xref="GeneID:116760436"
                     /translation="MSVPIFTSIWKLNFSLRTKYVGFGQCFIGTGLKRRLFAGHGVQW
                     VPAGGLIRPPRFSGRSPPRPSTTEMEQETVSGSAELRAEAASYRCSACHGDEDWGLGH
                     PIRGRAKSRSLSAAPTLASTREFRRTRSLHGPCPVTTFGPKACVLQNPQTIMHIQDPA
                     SQRLTWNKSPKSVLVIKKIRDASLLQPFKELCVYLMEENNMIVYVEKKVLEDPAIVSD
                     DRFGPVKRKFCTFREDYDDISNQIDLIICLGGDGTLLYASSLFQGSVPPVMAFHLGSL
                     GFLTPFNFENFQSQVTQVIQGNAAVVLRSRLKVRVVKELRGKKVAVPNGISENGVLAA
                     ALDAEVGKQVMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGST
                     AYAAAAGASMIHPNVPAIMLTPICPHSLSFRPIVVPAGVELKIMLSPEARNTVWVSFD
                     GRKRQEVRHGDSISITTSRYPLPSICVRDPVSDWFESLAQCLHWNVRKKQAHFAEDEE
                     DAHEEDGAGRAGSQACGPAVCTRDGRT"
     misc_feature    <648..1664
                     /gene="NADK"
                     /note="bifunctional NADP phosphatase/NAD kinase; Region:
                     pnk; cl28462"
                     /db_xref="CDD:333282"
ORIGIN      
        1 aggccatggc tcacgggccc agccgctccg cggcatgtgg gatcctcccg gaccggggca
       61 cgaacccgtg tcccctgcat cggcaggcgg actcccaacc actgagccac cagggaagcc
      121 ctctgcttcc atcttttcct gctttactat gttgtggtta gaagatgagc gtgcctatct
      181 ttactagtat ttggaagttg aacttttctt tgaggaccaa gtacgttggt tttggccagt
      241 gtttcattgg cactggatta aagcgcaggc tgtttgcagg acatggagtt cagtgggtgc
      301 ctgctggtgg tcttatcagg cctccgcggt tttcgggccg aagtcctcct cgtccatcga
      361 ctacagaaat ggaacaagaa acagtcagcg ggagtgcgga gctgcgtgca gaggcggcct
      421 cctaccgctg ctccgcgtgc catggtgacg aggactgggg cctgggccac cccatccggg
      481 gccgcgccaa gtcccgcagc ctgtcggccg cgcccaccct ggccagcacc cgcgagttca
      541 ggaggacccg ctcgctacac gggccgtgcc cagtgaccac ttttggacca aaggcctgcg
      601 tgctgcagaa tccccagacc atcatgcaca tccaggaccc tgccagccag cggctgacgt
      661 ggaacaagtc cccaaagagc gtcctcgtca tcaagaagat ccgggacgcc agcctgctcc
      721 agcccttcaa ggagctctgc gtgtacctga tggaggaaaa caacatgatc gtgtacgtgg
      781 agaagaaggt tctggaggac cccgccatcg tgagcgatga ccgctttggg ccagtgaaga
      841 ggaagttctg caccttcaga gaagattacg atgacatctc caaccagatt gatctcatca
      901 tttgcctggg aggagacggg accctgctgt acgcctcgtc gctcttccag ggcagcgtgc
      961 ctccggtcat ggcgttccac ctgggctccc tgggcttcct gacccccttc aacttcgaga
     1021 actttcagtc ccaagttact caggtgatac aggggaacgc agctgttgtt ctccggagcc
     1081 ggctgaaggt cagggttgtg aaggagctcc gagggaagaa ggtggccgtc cccaacggga
     1141 tcagtgagaa cggggtgctg gccgcagccc tggacgcaga ggtcgggaag caggtcatgc
     1201 agtaccaggt cttaaacgag gtggtgatag acagaggccc atcctcatac ctgtccaacg
     1261 tggacgtcta cctggatggg cacctcatca ccacggtgca gggcgacggc gtgatcgtct
     1321 ccaccccaac gggtagcaca gcgtacgcag ccgccgccgg ggcctccatg atccacccca
     1381 acgtgccggc catcatgctc acgcccatct gcccccactc gctgtccttc cggcccatcg
     1441 tggttcctgc aggggtcgag ctgaagatca tgctgtcacc ggaagcaagg aacactgtgt
     1501 gggtgtcctt cgatggacga aagagacagg aggtccgcca cggagacagc atcagcatca
     1561 ctacctctcg ctacccgctc ccctccatct gtgtccgcga ccccgtgagc gactggtttg
     1621 agagcctggc acagtgtctg cactggaacg tgcggaagaa gcaagcccac ttcgcggagg
     1681 acgaggagga tgcgcacgag gaggatgggg cggggcgggc ggggagccag gcctgcggtc
     1741 ctgccgtctg cactcgcgac gggcggacct gagtgcgtcg tgagcgccac gggcccagcg
     1801 ccagtggcag gtgccgcacc acatgtctgg ccagaggaag ggcctgcaat ctgccttttg
     1861 ttgaccagat cagctgtttt taacgtttta aatctgactt ttctgcattt ctaaacaagt
     1921 gagcagacca ggagctctga ggtcagccca ggcgcactca ccctgcgtgt ggacagagcc
     1981 cggccccagg cagggacggc cgagcctggt gggctccttg tagttccttg tgaggaaact
     2041 tccataaatc agtctactga gattcagagg ggatcagaat gaatgggtct atcctatggt
     2101 cttgaaaata aatgtctcac ggccaaaaat ccttcagctc ccacgacttc ccctgaagcc
     2161 actcgggggg acgcttctgc cgagagcagg ttggctgcca ggacagatgg gtccccaggc
     2221 cccggtctcc tcccccgctt cagggtgacc ggcactggcg ggacgagggt tcagaccgca
     2281 cacattcctc gggaagcagg gacgcacctc cccaccctgg aaggtgttct cgattctgtg
     2341 tctacttttt agagattctt ttaaactttc tgaaagtgct tacgtacaga ttttgttgtg
     2401 tacactttga gaattcggcg agaagggagt ttgtgccgtg aagtgggacc atccggtgca
     2461 gcccgcgcga ccgcccggag agctgggcga cttgctcaga gcgcctggcg ctccgcgggc
     2521 cgggaggggt tgaagcggct cttgcttctc cccaggggcc tggcttcgag ggcgtgcccg
     2581 tcggtccagc ccccgcgcct ccatcgctgg ctgcctgggg ctggggccgc ctggagtctg
     2641 gtgggagcag tggctcgcgg ggggcgtgtg gccctggccc cgcttactgt cgcctaacgg
     2701 gcttcctatt tttgagtaac tgatttctct ctgagttgca ttttctcctg ttaaattggc
     2761 cagaacagaa gggatggggg cccgtcattt cttggacttc ctcctggagg gacaggggcc
     2821 ggggggcgct gtgctttgcc cgcttggagt gtcacgggct gatggaaggg catccagggt
     2881 cccagggcag gccctgcggc ctgagcgccg tggccaccgt ccgtgtgtgt accaagtgct
     2941 gctgcctcgc gtgcctgtgt gggcggctca gccggtgctg ggcacagagg tcggttccca
     3001 ccctctgccc gcgagttcgg gcacagtggg cagcccgctc agcctcccgt gggctgaggg
     3061 ggcgacactc ccagctttag gcccagaaga gagtggcatt cagaacacag gttactcgtt
     3121 cagacaacag agccagtgta gaccaagtcc tgaagcgtga cagggaatga actaggaaat
     3181 tttgggtttt tgaaatcaat tcttaatgtt tcatattgtt aatatcttga aaatttgtta
     3241 aatgttgaaa gccttattac tattttcaga ttctttcaat aaacaggctt gtttaaaaag
     3301 t
//
LOCUS       XR_004351744            1773 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NAD kinase (NADK), transcript variant X3,
            misc_RNA.
ACCESSION   XR_004351744
VERSION     XR_004351744.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1773
                     /gene="NADK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116760436"
     misc_RNA        1..1773
                     /gene="NADK"
                     /product="NAD kinase, transcript variant X3"
                     /db_xref="GeneID:116760436"
ORIGIN      
        1 ctcagaggcc atggctcacg ggcccagccg ctccgcggca tgtgggatcc tcccggaccg
       61 gggcacgaac ccgtgtcccc tgcatcggca ggcggactcc caaccactga gccaccaggg
      121 aagccctctg cttccatctt ttcctgcttt actatgttgt ggttagaaga tgagcgtgcc
      181 tatctttact agtatttgga agttgaactt ttctttgagg accaagtacg ttggttttgg
      241 ccagtgtttc attggcactg gattaaagcg caggctgttt gcaggacatg gagttcagtg
      301 ggtgcctgct ggtggtctta tcaggcctcc gcggttttcg ggccgaagtc ctcctcgtcc
      361 atcgactaca gaaatggaac aagaaacagt cagcgggagt gcggagctgc gtgcagaggc
      421 ggcctcctac cgctgctccg cgtgccatgg tgacgaggac tggggcctgg gccaccccat
      481 ccggggccgc gccaagtccc gcagcctgtc ggccgcgccc accctggcca gcacccgcga
      541 gttcaggagg acccgctcgc tacacgggcc gtgcccagtg accacttttg gaccaaaggc
      601 ctgcgtgctg cagaatcccc agaccatcat gcacatccag gaccctgcca gccagcggct
      661 gacgtggaac aagtccccaa agagcgtcct cgtcatcaag aagatccggg acgccagcct
      721 gctccagccc ttcaaggagc tctgcgtgta cctgatggag gaaaacaaca tgatcgtgta
      781 cgtggagaag aaggttctgg aggaccccgc catcgtgagc gatgaccgct ttgggccagt
      841 gaagaggaag ttctgcacct tcagagaaga ttacgatgac atctccaacc agattgatct
      901 catcatttgc ctgggaggag acgggaccct gctgtacgcc tcgtcgctct tccagggcag
      961 cgtgcctccg gtcatggcgt tccacctggg ctccctgggc ttcctgaccc ccttcaactt
     1021 cgagaacttt cagtcccaag ttactcaggt gatacagggg aacgcagctg ttgttctccg
     1081 gagccggctg aaggtcaggg ttgtgaagga gctccgaggg aagaaggtgg ccgtccccaa
     1141 cgggatcagt gagaacgggg tgctggccgc agccctggac gcagaggtcg ggaagcaggt
     1201 catgcagtac caggtcttaa acgaggtggt gatagacaga ggcccatcct catacctgtc
     1261 caacgtggac gtctacctgg atgggcacct catcaccacg gtgcagggcg acgcctgtcc
     1321 cgcaggcgtg atcgtctcca ccccaacggg tagcacagcg tacgcagccg ccgccggggc
     1381 ctccatgatc caccccaacg tgccggccat catgctcacg cccatctgcc cccactcgct
     1441 gtccttccgg cccatcgtgg ttcctgcagg ggtcgagctg aagcctggaa ctgaccttgg
     1501 cacgtggtgg gcattggggg cgcccgtgag gttcctcccg gccggtgctg tcccccccgg
     1561 ggtagggtcc acggcgctcg gctgcgctca ggtagcccac acctgtcctg attgacccgt
     1621 cagatcatgc tgtcaccgga agcaaggaac actgtgtggg tgtccttcga tggacgaaag
     1681 agacaggagg tccgccacgg agacagcatc agcatcacta cctctcgcta cccgctcccc
     1741 tccatctgtg tccgcgaccc cgtgagcgac tgg
//
LOCUS       XM_032645305            3144 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NAD kinase (NADK), transcript variant X4,
            mRNA.
ACCESSION   XM_032645305
VERSION     XM_032645305.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3144
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3144
                     /gene="NADK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760436"
     CDS             200..1615
                     /gene="NADK"
                     /codon_start=1
                     /product="NAD kinase isoform X3"
                     /protein_id="XP_032501196.1"
                     /db_xref="GeneID:116760436"
                     /translation="MEQETVSGSAELRAEAASYRCSACHGDEDWGLGHPIRGRAKSRS
                     LSAAPTLASTREFRRTRSLHGPCPVTTFGPKACVLQNPQTIMHIQDPASQRLTWNKSP
                     KSVLVIKKIRDASLLQPFKELCVYLMEENNMIVYVEKKVLEDPAIVSDDRFGPVKRKF
                     CTFREDYDDISNQIDLIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFNFEN
                     FQSQVTQVIQGNAAVVLRSRLKVRVVKELRGKKVAVPNGISENGVLAAALDAEVGKQV
                     MQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDACPAGVIVSTPTGSTAYAAAA
                     GASMIHPNVPAIMLTPICPHSLSFRPIVVPAGVELKIMLSPEARNTVWVSFDGRKRQE
                     VRHGDSISITTSRYPLPSICVRDPVSDWFESLAQCLHWNVRKKQAHFAEDEEDAHEED
                     GAGRAGSQACGPAVCTRDGRT"
     misc_feature    <479..1507
                     /gene="NADK"
                     /note="bifunctional NADP phosphatase/NAD kinase; Region:
                     pnk; cl28462"
                     /db_xref="CDD:333282"
ORIGIN      
        1 ccttgccccc cttttcactc acccttgata accccatggc ccagtgctgc caggacagca
       61 atgacaggtg tcctttgctg tgcccagctg tgttccaggt ctctcaacac agggcgagga
      121 gtcccggcca gagaagactg tcagcggcag gcctccgcgg ttttcgggcc gaagtcctcc
      181 tcgtccatcg actacagaaa tggaacaaga aacagtcagc gggagtgcgg agctgcgtgc
      241 agaggcggcc tcctaccgct gctccgcgtg ccatggtgac gaggactggg gcctgggcca
      301 ccccatccgg ggccgcgcca agtcccgcag cctgtcggcc gcgcccaccc tggccagcac
      361 ccgcgagttc aggaggaccc gctcgctaca cgggccgtgc ccagtgacca cttttggacc
      421 aaaggcctgc gtgctgcaga atccccagac catcatgcac atccaggacc ctgccagcca
      481 gcggctgacg tggaacaagt ccccaaagag cgtcctcgtc atcaagaaga tccgggacgc
      541 cagcctgctc cagcccttca aggagctctg cgtgtacctg atggaggaaa acaacatgat
      601 cgtgtacgtg gagaagaagg ttctggagga ccccgccatc gtgagcgatg accgctttgg
      661 gccagtgaag aggaagttct gcaccttcag agaagattac gatgacatct ccaaccagat
      721 tgatctcatc atttgcctgg gaggagacgg gaccctgctg tacgcctcgt cgctcttcca
      781 gggcagcgtg cctccggtca tggcgttcca cctgggctcc ctgggcttcc tgaccccctt
      841 caacttcgag aactttcagt cccaagttac tcaggtgata caggggaacg cagctgttgt
      901 tctccggagc cggctgaagg tcagggttgt gaaggagctc cgagggaaga aggtggccgt
      961 ccccaacggg atcagtgaga acggggtgct ggccgcagcc ctggacgcag aggtcgggaa
     1021 gcaggtcatg cagtaccagg tcttaaacga ggtggtgata gacagaggcc catcctcata
     1081 cctgtccaac gtggacgtct acctggatgg gcacctcatc accacggtgc agggcgacgc
     1141 ctgtcccgca ggcgtgatcg tctccacccc aacgggtagc acagcgtacg cagccgccgc
     1201 cggggcctcc atgatccacc ccaacgtgcc ggccatcatg ctcacgccca tctgccccca
     1261 ctcgctgtcc ttccggccca tcgtggttcc tgcaggggtc gagctgaaga tcatgctgtc
     1321 accggaagca aggaacactg tgtgggtgtc cttcgatgga cgaaagagac aggaggtccg
     1381 ccacggagac agcatcagca tcactacctc tcgctacccg ctcccctcca tctgtgtccg
     1441 cgaccccgtg agcgactggt ttgagagcct ggcacagtgt ctgcactgga acgtgcggaa
     1501 gaagcaagcc cacttcgcgg aggacgagga ggatgcgcac gaggaggatg gggcggggcg
     1561 ggcggggagc caggcctgcg gtcctgccgt ctgcactcgc gacgggcgga cctgagtgcg
     1621 tcgtgagcgc cacgggccca gcgccagtgg caggtgccgc accacatgtc tggccagagg
     1681 aagggcctgc aatctgcctt ttgttgacca gatcagctgt ttttaacgtt ttaaatctga
     1741 cttttctgca tttctaaaca agtgagcaga ccaggagctc tgaggtcagc ccaggcgcac
     1801 tcaccctgcg tgtggacaga gcccggcccc aggcagggac ggccgagcct ggtgggctcc
     1861 ttgtagttcc ttgtgaggaa acttccataa atcagtctac tgagattcag aggggatcag
     1921 aatgaatggg tctatcctat ggtcttgaaa ataaatgtct cacggccaaa aatccttcag
     1981 ctcccacgac ttcccctgaa gccactcggg gggacgcttc tgccgagagc aggttggctg
     2041 ccaggacaga tgggtcccca ggccccggtc tcctcccccg cttcagggtg accggcactg
     2101 gcgggacgag ggttcagacc gcacacattc ctcgggaagc agggacgcac ctccccaccc
     2161 tggaaggtgt tctcgattct gtgtctactt tttagagatt cttttaaact ttctgaaagt
     2221 gcttacgtac agattttgtt gtgtacactt tgagaattcg gcgagaaggg agtttgtgcc
     2281 gtgaagtggg accatccggt gcagcccgcg cgaccgcccg gagagctggg cgacttgctc
     2341 agagcgcctg gcgctccgcg ggccgggagg ggttgaagcg gctcttgctt ctccccaggg
     2401 gcctggcttc gagggcgtgc ccgtcggtcc agcccccgcg cctccatcgc tggctgcctg
     2461 gggctggggc cgcctggagt ctggtgggag cagtggctcg cggggggcgt gtggccctgg
     2521 ccccgcttac tgtcgcctaa cgggcttcct atttttgagt aactgatttc tctctgagtt
     2581 gcattttctc ctgttaaatt ggccagaaca gaagggatgg gggcccgtca tttcttggac
     2641 ttcctcctgg agggacaggg gccggggggc gctgtgcttt gcccgcttgg agtgtcacgg
     2701 gctgatggaa gggcatccag ggtcccaggg caggccctgc ggcctgagcg ccgtggccac
     2761 cgtccgtgtg tgtaccaagt gctgctgcct cgcgtgcctg tgtgggcggc tcagccggtg
     2821 ctgggcacag aggtcggttc ccaccctctg cccgcgagtt cgggcacagt gggcagcccg
     2881 ctcagcctcc cgtgggctga gggggcgaca ctcccagctt taggcccaga agagagtggc
     2941 attcagaaca caggttactc gttcagacaa cagagccagt gtagaccaag tcctgaagcg
     3001 tgacagggaa tgaactagga aattttgggt ttttgaaatc aattcttaat gtttcatatt
     3061 gttaatatct tgaaaatttg ttaaatgttg aaagccttat tactattttc agattctttc
     3121 aataaacagg cttgtttaaa aagt
//
LOCUS       XM_032645314            3089 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NAD kinase (NADK), transcript variant X5,
            mRNA.
ACCESSION   XM_032645314
VERSION     XM_032645314.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3089
                     /gene="NADK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760436"
     CDS             145..1560
                     /gene="NADK"
                     /codon_start=1
                     /product="NAD kinase isoform X3"
                     /protein_id="XP_032501205.1"
                     /db_xref="GeneID:116760436"
                     /translation="MEQETVSGSAELRAEAASYRCSACHGDEDWGLGHPIRGRAKSRS
                     LSAAPTLASTREFRRTRSLHGPCPVTTFGPKACVLQNPQTIMHIQDPASQRLTWNKSP
                     KSVLVIKKIRDASLLQPFKELCVYLMEENNMIVYVEKKVLEDPAIVSDDRFGPVKRKF
                     CTFREDYDDISNQIDLIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFNFEN
                     FQSQVTQVIQGNAAVVLRSRLKVRVVKELRGKKVAVPNGISENGVLAAALDAEVGKQV
                     MQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDACPAGVIVSTPTGSTAYAAAA
                     GASMIHPNVPAIMLTPICPHSLSFRPIVVPAGVELKIMLSPEARNTVWVSFDGRKRQE
                     VRHGDSISITTSRYPLPSICVRDPVSDWFESLAQCLHWNVRKKQAHFAEDEEDAHEED
                     GAGRAGSQACGPAVCTRDGRT"
     misc_feature    <424..1452
                     /gene="NADK"
                     /note="bifunctional NADP phosphatase/NAD kinase; Region:
                     pnk; cl28462"
                     /db_xref="CDD:333282"
ORIGIN      
        1 tggggcaggg ggcggccgcg gcgccgggga ccggctagcg actgcgagcg gcggcggggc
       61 ggcgggaccc gcgggctcgg cccggcgagc gaacggcctc cgcggttttc gggccgaagt
      121 cctcctcgtc catcgactac agaaatggaa caagaaacag tcagcgggag tgcggagctg
      181 cgtgcagagg cggcctccta ccgctgctcc gcgtgccatg gtgacgagga ctggggcctg
      241 ggccacccca tccggggccg cgccaagtcc cgcagcctgt cggccgcgcc caccctggcc
      301 agcacccgcg agttcaggag gacccgctcg ctacacgggc cgtgcccagt gaccactttt
      361 ggaccaaagg cctgcgtgct gcagaatccc cagaccatca tgcacatcca ggaccctgcc
      421 agccagcggc tgacgtggaa caagtcccca aagagcgtcc tcgtcatcaa gaagatccgg
      481 gacgccagcc tgctccagcc cttcaaggag ctctgcgtgt acctgatgga ggaaaacaac
      541 atgatcgtgt acgtggagaa gaaggttctg gaggaccccg ccatcgtgag cgatgaccgc
      601 tttgggccag tgaagaggaa gttctgcacc ttcagagaag attacgatga catctccaac
      661 cagattgatc tcatcatttg cctgggagga gacgggaccc tgctgtacgc ctcgtcgctc
      721 ttccagggca gcgtgcctcc ggtcatggcg ttccacctgg gctccctggg cttcctgacc
      781 cccttcaact tcgagaactt tcagtcccaa gttactcagg tgatacaggg gaacgcagct
      841 gttgttctcc ggagccggct gaaggtcagg gttgtgaagg agctccgagg gaagaaggtg
      901 gccgtcccca acgggatcag tgagaacggg gtgctggccg cagccctgga cgcagaggtc
      961 gggaagcagg tcatgcagta ccaggtctta aacgaggtgg tgatagacag aggcccatcc
     1021 tcatacctgt ccaacgtgga cgtctacctg gatgggcacc tcatcaccac ggtgcagggc
     1081 gacgcctgtc ccgcaggcgt gatcgtctcc accccaacgg gtagcacagc gtacgcagcc
     1141 gccgccgggg cctccatgat ccaccccaac gtgccggcca tcatgctcac gcccatctgc
     1201 ccccactcgc tgtccttccg gcccatcgtg gttcctgcag gggtcgagct gaagatcatg
     1261 ctgtcaccgg aagcaaggaa cactgtgtgg gtgtccttcg atggacgaaa gagacaggag
     1321 gtccgccacg gagacagcat cagcatcact acctctcgct acccgctccc ctccatctgt
     1381 gtccgcgacc ccgtgagcga ctggtttgag agcctggcac agtgtctgca ctggaacgtg
     1441 cggaagaagc aagcccactt cgcggaggac gaggaggatg cgcacgagga ggatggggcg
     1501 gggcgggcgg ggagccaggc ctgcggtcct gccgtctgca ctcgcgacgg gcggacctga
     1561 gtgcgtcgtg agcgccacgg gcccagcgcc agtggcaggt gccgcaccac atgtctggcc
     1621 agaggaaggg cctgcaatct gccttttgtt gaccagatca gctgttttta acgttttaaa
     1681 tctgactttt ctgcatttct aaacaagtga gcagaccagg agctctgagg tcagcccagg
     1741 cgcactcacc ctgcgtgtgg acagagcccg gccccaggca gggacggccg agcctggtgg
     1801 gctccttgta gttccttgtg aggaaacttc cataaatcag tctactgaga ttcagagggg
     1861 atcagaatga atgggtctat cctatggtct tgaaaataaa tgtctcacgg ccaaaaatcc
     1921 ttcagctccc acgacttccc ctgaagccac tcggggggac gcttctgccg agagcaggtt
     1981 ggctgccagg acagatgggt ccccaggccc cggtctcctc ccccgcttca gggtgaccgg
     2041 cactggcggg acgagggttc agaccgcaca cattcctcgg gaagcaggga cgcacctccc
     2101 caccctggaa ggtgttctcg attctgtgtc tactttttag agattctttt aaactttctg
     2161 aaagtgctta cgtacagatt ttgttgtgta cactttgaga attcggcgag aagggagttt
     2221 gtgccgtgaa gtgggaccat ccggtgcagc ccgcgcgacc gcccggagag ctgggcgact
     2281 tgctcagagc gcctggcgct ccgcgggccg ggaggggttg aagcggctct tgcttctccc
     2341 caggggcctg gcttcgaggg cgtgcccgtc ggtccagccc ccgcgcctcc atcgctggct
     2401 gcctggggct ggggccgcct ggagtctggt gggagcagtg gctcgcgggg ggcgtgtggc
     2461 cctggccccg cttactgtcg cctaacgggc ttcctatttt tgagtaactg atttctctct
     2521 gagttgcatt ttctcctgtt aaattggcca gaacagaagg gatgggggcc cgtcatttct
     2581 tggacttcct cctggaggga caggggccgg ggggcgctgt gctttgcccg cttggagtgt
     2641 cacgggctga tggaagggca tccagggtcc cagggcaggc cctgcggcct gagcgccgtg
     2701 gccaccgtcc gtgtgtgtac caagtgctgc tgcctcgcgt gcctgtgtgg gcggctcagc
     2761 cggtgctggg cacagaggtc ggttcccacc ctctgcccgc gagttcgggc acagtgggca
     2821 gcccgctcag cctcccgtgg gctgaggggg cgacactccc agctttaggc ccagaagaga
     2881 gtggcattca gaacacaggt tactcgttca gacaacagag ccagtgtaga ccaagtcctg
     2941 aagcgtgaca gggaatgaac taggaaattt tgggtttttg aaatcaattc ttaatgtttc
     3001 atattgttaa tatcttgaaa atttgttaaa tgttgaaagc cttattacta ttttcagatt
     3061 ctttcaataa acaggcttgt ttaaaaagt
//
LOCUS       XM_032645323            3046 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NAD kinase (NADK), transcript variant X6,
            mRNA.
ACCESSION   XM_032645323
VERSION     XM_032645323.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3046
                     /gene="NADK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116760436"
     CDS             102..1517
                     /gene="NADK"
                     /codon_start=1
                     /product="NAD kinase isoform X3"
                     /protein_id="XP_032501214.1"
                     /db_xref="GeneID:116760436"
                     /translation="MEQETVSGSAELRAEAASYRCSACHGDEDWGLGHPIRGRAKSRS
                     LSAAPTLASTREFRRTRSLHGPCPVTTFGPKACVLQNPQTIMHIQDPASQRLTWNKSP
                     KSVLVIKKIRDASLLQPFKELCVYLMEENNMIVYVEKKVLEDPAIVSDDRFGPVKRKF
                     CTFREDYDDISNQIDLIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFNFEN
                     FQSQVTQVIQGNAAVVLRSRLKVRVVKELRGKKVAVPNGISENGVLAAALDAEVGKQV
                     MQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDACPAGVIVSTPTGSTAYAAAA
                     GASMIHPNVPAIMLTPICPHSLSFRPIVVPAGVELKIMLSPEARNTVWVSFDGRKRQE
                     VRHGDSISITTSRYPLPSICVRDPVSDWFESLAQCLHWNVRKKQAHFAEDEEDAHEED
                     GAGRAGSQACGPAVCTRDGRT"
     misc_feature    <381..1409
                     /gene="NADK"
                     /note="bifunctional NADP phosphatase/NAD kinase; Region:
                     pnk; cl28462"
                     /db_xref="CDD:333282"
ORIGIN      
        1 acaggctccg atggaggaag ccacagcccc cgttttctca tttctgaaat gggcctccgc
       61 ggttttcggg ccgaagtcct cctcgtccat cgactacaga aatggaacaa gaaacagtca
      121 gcgggagtgc ggagctgcgt gcagaggcgg cctcctaccg ctgctccgcg tgccatggtg
      181 acgaggactg gggcctgggc caccccatcc ggggccgcgc caagtcccgc agcctgtcgg
      241 ccgcgcccac cctggccagc acccgcgagt tcaggaggac ccgctcgcta cacgggccgt
      301 gcccagtgac cacttttgga ccaaaggcct gcgtgctgca gaatccccag accatcatgc
      361 acatccagga ccctgccagc cagcggctga cgtggaacaa gtccccaaag agcgtcctcg
      421 tcatcaagaa gatccgggac gccagcctgc tccagccctt caaggagctc tgcgtgtacc
      481 tgatggagga aaacaacatg atcgtgtacg tggagaagaa ggttctggag gaccccgcca
      541 tcgtgagcga tgaccgcttt gggccagtga agaggaagtt ctgcaccttc agagaagatt
      601 acgatgacat ctccaaccag attgatctca tcatttgcct gggaggagac gggaccctgc
      661 tgtacgcctc gtcgctcttc cagggcagcg tgcctccggt catggcgttc cacctgggct
      721 ccctgggctt cctgaccccc ttcaacttcg agaactttca gtcccaagtt actcaggtga
      781 tacaggggaa cgcagctgtt gttctccgga gccggctgaa ggtcagggtt gtgaaggagc
      841 tccgagggaa gaaggtggcc gtccccaacg ggatcagtga gaacggggtg ctggccgcag
      901 ccctggacgc agaggtcggg aagcaggtca tgcagtacca ggtcttaaac gaggtggtga
      961 tagacagagg cccatcctca tacctgtcca acgtggacgt ctacctggat gggcacctca
     1021 tcaccacggt gcagggcgac gcctgtcccg caggcgtgat cgtctccacc ccaacgggta
     1081 gcacagcgta cgcagccgcc gccggggcct ccatgatcca ccccaacgtg ccggccatca
     1141 tgctcacgcc catctgcccc cactcgctgt ccttccggcc catcgtggtt cctgcagggg
     1201 tcgagctgaa gatcatgctg tcaccggaag caaggaacac tgtgtgggtg tccttcgatg
     1261 gacgaaagag acaggaggtc cgccacggag acagcatcag catcactacc tctcgctacc
     1321 cgctcccctc catctgtgtc cgcgaccccg tgagcgactg gtttgagagc ctggcacagt
     1381 gtctgcactg gaacgtgcgg aagaagcaag cccacttcgc ggaggacgag gaggatgcgc
     1441 acgaggagga tggggcgggg cgggcgggga gccaggcctg cggtcctgcc gtctgcactc
     1501 gcgacgggcg gacctgagtg cgtcgtgagc gccacgggcc cagcgccagt ggcaggtgcc
     1561 gcaccacatg tctggccaga ggaagggcct gcaatctgcc ttttgttgac cagatcagct
     1621 gtttttaacg ttttaaatct gacttttctg catttctaaa caagtgagca gaccaggagc
     1681 tctgaggtca gcccaggcgc actcaccctg cgtgtggaca gagcccggcc ccaggcaggg
     1741 acggccgagc ctggtgggct ccttgtagtt ccttgtgagg aaacttccat aaatcagtct
     1801 actgagattc agaggggatc agaatgaatg ggtctatcct atggtcttga aaataaatgt
     1861 ctcacggcca aaaatccttc agctcccacg acttcccctg aagccactcg gggggacgct
     1921 tctgccgaga gcaggttggc tgccaggaca gatgggtccc caggccccgg tctcctcccc
     1981 cgcttcaggg tgaccggcac tggcgggacg agggttcaga ccgcacacat tcctcgggaa
     2041 gcagggacgc acctccccac cctggaaggt gttctcgatt ctgtgtctac tttttagaga
     2101 ttcttttaaa ctttctgaaa gtgcttacgt acagattttg ttgtgtacac tttgagaatt
     2161 cggcgagaag ggagtttgtg ccgtgaagtg ggaccatccg gtgcagcccg cgcgaccgcc
     2221 cggagagctg ggcgacttgc tcagagcgcc tggcgctccg cgggccggga ggggttgaag
     2281 cggctcttgc ttctccccag gggcctggct tcgagggcgt gcccgtcggt ccagcccccg
     2341 cgcctccatc gctggctgcc tggggctggg gccgcctgga gtctggtggg agcagtggct
     2401 cgcggggggc gtgtggccct ggccccgctt actgtcgcct aacgggcttc ctatttttga
     2461 gtaactgatt tctctctgag ttgcattttc tcctgttaaa ttggccagaa cagaagggat
     2521 gggggcccgt catttcttgg acttcctcct ggagggacag gggccggggg gcgctgtgct
     2581 ttgcccgctt ggagtgtcac gggctgatgg aagggcatcc agggtcccag ggcaggccct
     2641 gcggcctgag cgccgtggcc accgtccgtg tgtgtaccaa gtgctgctgc ctcgcgtgcc
     2701 tgtgtgggcg gctcagccgg tgctgggcac agaggtcggt tcccaccctc tgcccgcgag
     2761 ttcgggcaca gtgggcagcc cgctcagcct cccgtgggct gagggggcga cactcccagc
     2821 tttaggccca gaagagagtg gcattcagaa cacaggttac tcgttcagac aacagagcca
     2881 gtgtagacca agtcctgaag cgtgacaggg aatgaactag gaaattttgg gtttttgaaa
     2941 tcaattctta atgtttcata ttgttaatat cttgaaaatt tgttaaatgt tgaaagcctt
     3001 attactattt tcagattctt tcaataaaca ggcttgttta aaaagt
//
LOCUS       XM_032645331            3101 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NAD kinase (NADK), transcript variant X7,
            mRNA.
ACCESSION   XM_032645331
VERSION     XM_032645331.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3101
                     /gene="NADK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 16 long SRA reads, 10
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116760436"
     CDS             169..1572
                     /gene="NADK"
                     /codon_start=1
                     /product="NAD kinase isoform X4"
                     /protein_id="XP_032501222.1"
                     /db_xref="GeneID:116760436"
                     /translation="MEQETVSGSAELRAEAASYRCSACHGDEDWGLGHPIRGRAKSRS
                     LSAAPTLASTREFRRTRSLHGPCPVTTFGPKACVLQNPQTIMHIQDPASQRLTWNKSP
                     KSVLVIKKIRDASLLQPFKELCVYLMEENNMIVYVEKKVLEDPAIVSDDRFGPVKRKF
                     CTFREDYDDISNQIDLIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFNFEN
                     FQSQVTQVIQGNAAVVLRSRLKVRVVKELRGKKVAVPNGISENGVLAAALDAEVGKQV
                     MQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASM
                     IHPNVPAIMLTPICPHSLSFRPIVVPAGVELKIMLSPEARNTVWVSFDGRKRQEVRHG
                     DSISITTSRYPLPSICVRDPVSDWFESLAQCLHWNVRKKQAHFAEDEEDAHEEDGAGR
                     AGSQACGPAVCTRDGRT"
     misc_feature    <448..1464
                     /gene="NADK"
                     /note="bifunctional NADP phosphatase/NAD kinase; Region:
                     pnk; cl28462"
                     /db_xref="CDD:333282"
ORIGIN      
        1 cacaacaggc tccgatggag gaagccacag cccccgtttt ctcatttctg aaatggctgt
       61 gttccaggtc tctcaacaca gggcgaggag tcccggccag agaagactgt cagcggcagg
      121 cctccgcggt tttcgggccg aagtcctcct cgtccatcga ctacagaaat ggaacaagaa
      181 acagtcagcg ggagtgcgga gctgcgtgca gaggcggcct cctaccgctg ctccgcgtgc
      241 catggtgacg aggactgggg cctgggccac cccatccggg gccgcgccaa gtcccgcagc
      301 ctgtcggccg cgcccaccct ggccagcacc cgcgagttca ggaggacccg ctcgctacac
      361 gggccgtgcc cagtgaccac ttttggacca aaggcctgcg tgctgcagaa tccccagacc
      421 atcatgcaca tccaggaccc tgccagccag cggctgacgt ggaacaagtc cccaaagagc
      481 gtcctcgtca tcaagaagat ccgggacgcc agcctgctcc agcccttcaa ggagctctgc
      541 gtgtacctga tggaggaaaa caacatgatc gtgtacgtgg agaagaaggt tctggaggac
      601 cccgccatcg tgagcgatga ccgctttggg ccagtgaaga ggaagttctg caccttcaga
      661 gaagattacg atgacatctc caaccagatt gatctcatca tttgcctggg aggagacggg
      721 accctgctgt acgcctcgtc gctcttccag ggcagcgtgc ctccggtcat ggcgttccac
      781 ctgggctccc tgggcttcct gacccccttc aacttcgaga actttcagtc ccaagttact
      841 caggtgatac aggggaacgc agctgttgtt ctccggagcc ggctgaaggt cagggttgtg
      901 aaggagctcc gagggaagaa ggtggccgtc cccaacggga tcagtgagaa cggggtgctg
      961 gccgcagccc tggacgcaga ggtcgggaag caggtcatgc agtaccaggt cttaaacgag
     1021 gtggtgatag acagaggccc atcctcatac ctgtccaacg tggacgtcta cctggatggg
     1081 cacctcatca ccacggtgca gggcgacggc gtgatcgtct ccaccccaac gggtagcaca
     1141 gcgtacgcag ccgccgccgg ggcctccatg atccacccca acgtgccggc catcatgctc
     1201 acgcccatct gcccccactc gctgtccttc cggcccatcg tggttcctgc aggggtcgag
     1261 ctgaagatca tgctgtcacc ggaagcaagg aacactgtgt gggtgtcctt cgatggacga
     1321 aagagacagg aggtccgcca cggagacagc atcagcatca ctacctctcg ctacccgctc
     1381 ccctccatct gtgtccgcga ccccgtgagc gactggtttg agagcctggc acagtgtctg
     1441 cactggaacg tgcggaagaa gcaagcccac ttcgcggagg acgaggagga tgcgcacgag
     1501 gaggatgggg cggggcgggc ggggagccag gcctgcggtc ctgccgtctg cactcgcgac
     1561 gggcggacct gagtgcgtcg tgagcgccac gggcccagcg ccagtggcag gtgccgcacc
     1621 acatgtctgg ccagaggaag ggcctgcaat ctgccttttg ttgaccagat cagctgtttt
     1681 taacgtttta aatctgactt ttctgcattt ctaaacaagt gagcagacca ggagctctga
     1741 ggtcagccca ggcgcactca ccctgcgtgt ggacagagcc cggccccagg cagggacggc
     1801 cgagcctggt gggctccttg tagttccttg tgaggaaact tccataaatc agtctactga
     1861 gattcagagg ggatcagaat gaatgggtct atcctatggt cttgaaaata aatgtctcac
     1921 ggccaaaaat ccttcagctc ccacgacttc ccctgaagcc actcgggggg acgcttctgc
     1981 cgagagcagg ttggctgcca ggacagatgg gtccccaggc cccggtctcc tcccccgctt
     2041 cagggtgacc ggcactggcg ggacgagggt tcagaccgca cacattcctc gggaagcagg
     2101 gacgcacctc cccaccctgg aaggtgttct cgattctgtg tctacttttt agagattctt
     2161 ttaaactttc tgaaagtgct tacgtacaga ttttgttgtg tacactttga gaattcggcg
     2221 agaagggagt ttgtgccgtg aagtgggacc atccggtgca gcccgcgcga ccgcccggag
     2281 agctgggcga cttgctcaga gcgcctggcg ctccgcgggc cgggaggggt tgaagcggct
     2341 cttgcttctc cccaggggcc tggcttcgag ggcgtgcccg tcggtccagc ccccgcgcct
     2401 ccatcgctgg ctgcctgggg ctggggccgc ctggagtctg gtgggagcag tggctcgcgg
     2461 ggggcgtgtg gccctggccc cgcttactgt cgcctaacgg gcttcctatt tttgagtaac
     2521 tgatttctct ctgagttgca ttttctcctg ttaaattggc cagaacagaa gggatggggg
     2581 cccgtcattt cttggacttc ctcctggagg gacaggggcc ggggggcgct gtgctttgcc
     2641 cgcttggagt gtcacgggct gatggaaggg catccagggt cccagggcag gccctgcggc
     2701 ctgagcgccg tggccaccgt ccgtgtgtgt accaagtgct gctgcctcgc gtgcctgtgt
     2761 gggcggctca gccggtgctg ggcacagagg tcggttccca ccctctgccc gcgagttcgg
     2821 gcacagtggg cagcccgctc agcctcccgt gggctgaggg ggcgacactc ccagctttag
     2881 gcccagaaga gagtggcatt cagaacacag gttactcgtt cagacaacag agccagtgta
     2941 gaccaagtcc tgaagcgtga cagggaatga actaggaaat tttgggtttt tgaaatcaat
     3001 tcttaatgtt tcatattgtt aatatcttga aaatttgtta aatgttgaaa gccttattac
     3061 tattttcaga ttctttcaat aaacaggctt gtttaaaaag t
//
LOCUS       XM_032645344            5279 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 35 member E2B-like
            (LOC116760465), mRNA.
ACCESSION   XM_032645344
VERSION     XM_032645344.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-193               VOSU01000011.1     700833-701025       c
            194-596             VOSU01000011.1     698239-698641       c
            597-732             VOSU01000011.1     698015-698150       c
            733-860             VOSU01000011.1     697680-697807       c
            861-981             VOSU01000011.1     695924-696044       c
            982-1035            VOSU01000011.1     694911-694964       c
            1036-1108           VOSU01000011.1     694545-694617       c
            1109-1254           VOSU01000011.1     693321-693466       c
            1255-1270           VOSU01000011.1     691733-691748       c
            1271-1363           VOSU01000011.1     691639-691731       c
            1364-1399           VOSU01000011.1     691602-691637       c
            1400-5279           VOSU01000011.1     687721-691600       c
FEATURES             Location/Qualifiers
     source          1..5279
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5279
                     /gene="LOC116760465"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 3 bases in 3 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 18 long SRA reads, 5 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760465"
     CDS             149..1492
                     /gene="LOC116760465"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 3 bases in 3 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: solute carrier family 35
                     member E2B-like"
                     /protein_id="XP_032501235.1"
                     /db_xref="GeneID:116760465"
                     /translation="MGPSPGASGASPHKQPAPRPVPPAWPLPPSPCPCPALPAAPEMS
                     ASAKPAALEELAPGPGEKPGGRPLLAWGPVFGHRSEKIAFGQSEGGPDEQVLTVTVTE
                     TTVIEADLGMWGARALIYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLI
                     GCVKIFVPCCLYQHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVK
                     SSAPIFTVILSRTVLGEHTGLLVNLSLIPVMGGLALCTATEMSFNFLGFSAALSTNIM
                     DCLQNVFSKKLLSGDKYRFSAAELQFYTSAAAVAMLVPAWIFFMDLPVIGRNARSFRY
                     SQDVLLLLLADGVLFHLQSVTAYALMGRISPVTFSVASTVKHALSIWLSVIVFGNRVT
                     SLSAVGTVLVTAGVLLYNKAKQQQREAMQSLAAATSRSPDSSPEPLLPLDPRPHH"
     misc_feature    494..1378
                     /gene="LOC116760465"
                     /note="Triose-phosphate Transporter family; Region: TPT;
                     cl26744"
                     /db_xref="CDD:474852"
ORIGIN      
        1 tgagctgcag agaaggaggc ggaggcccgg ctggcggtgc tgcctgggaa gctgtgagtt
       61 tcccagacgg aaaccgagtg gagagagtcg ggggaagcgc ctgcaccttg cctccagcct
      121 tgttttgtga cgagagagag aaaaggcgat gggaccctcc cccggggctt ctggagcatc
      181 acctcacaaa cagcccgcgc cccgcccagt gccacctgca tggccgctgc ctccatcccc
      241 gtgtccctgc cctgcgctgc ccgccgcccc tgagatgtcg gcatccgcta agcccgcggc
      301 cctggaagag ctggctccgg gccccggtga gaagccgggg ggacgaccgc tcctggcctg
      361 gggccccgtg tttggccacc ggagtgagaa gatcgcattt ggccagagcg aaggtggccc
      421 cgacgagcag gtgctcaccg tcaccgtcac cgagacgacc gtcatcgagg cggacctggg
      481 catgtggggt gcccgcgccc tcatctacct cacactctgg ttcttcttca gcttctgcac
      541 cctgtttctc aacaagtaca tcctgtccct gctagaaggg gagcccagca tgctaggggc
      601 cgtgcagatg ctgtcaacca cgctcattgg ctgtgttaaa atatttgttc cctgctgttt
      661 gtatcagcac aaaacccggc tttcttaccc tcccaacttc atcatgacca tgttgttcgt
      721 gggtctcatg aggtttgcaa cagtggtttt gggtctggtc agcctgaaaa acgtggcggt
      781 gtcctttgct gagacggtga agagctcggc ccccatcttc actgtgatcc tgtcccggac
      841 cgtcctgggg gagcacaccg ggctgctggt caacctctcg ctcatccctg tcatgggcgg
      901 cctggcgctg tgcacggcca ccgagatgag cttcaacttc ctggggtttt cggccgcctt
      961 gtccaccaac atcatggact gtttgcagaa cgttttctcc aaaaagctcc tcagcgggga
     1021 caaatatagg ttctcggccg cggagctgca gttctacacc agtgcagcgg ccgtggccat
     1081 gctcgtcccg gcctggatct tcttcatgga cttgccggtg atcgggagga atgcgaggag
     1141 cttccgctac agccaggacg tgctgcttct gctgctggcg gacggcgtcc tcttccacct
     1201 gcagagcgtc acggcctacg ccctcatggg gaggatctcc cccgtgacct tcagtgtcgc
     1261 cagcaccgtc aagcatgccc tgtccatctg gctcagcgtc atcgttttcg gcaacagggt
     1321 caccagcctg tcagccgtgg gcaccgtgct ggtgacggcc ggagtcctgc tctacaacaa
     1381 ggccaagcag cagcagcggg aggccatgca gagcctggct gcggccacca gccggtcccc
     1441 ggacagcagc cctgagccgc tgctccccct ggacccgcgg ccacaccact gagccccgga
     1501 gcctcagggg caccgcgcac cacgccgctc cttgccagtg ggggaccccc cttcgcctct
     1561 cccgctccct ggacggcagg gcgtggggcc tctggctcca cgggtcacag tccggatgtg
     1621 ggaggtgcgg gtgggcagcc tgtcccgctc tttcctggga cgttcggtca gagctggggg
     1681 agctcgaatc ggggtcccag atgtcagccc ctggggcgca gaccacagct gccactgagc
     1741 cgttgccgag ccacgtgaca acctcctcct ggcggcctct gcgcaccccc tgcagccagg
     1801 ccaggcccca attcctctgt gggtgacgac cactggggac agctgtgaag ccagggctgc
     1861 agccaggtgc cagcggctgc cctccccact tgtagccggc ggagagaacc cgcttcccca
     1921 cgccagccgt cggcggccac ccgaggtatg tccggctcct tggccatcag ggagtctgtc
     1981 cgctgggctc ggataggctg ccccactgcc cagacacgga ggccacggca tcgggacact
     2041 gagcagagag gggacagctg gggtgcagag accggcgttc cctgctcctg aggatggagt
     2101 gtccggcccc ggcctcccgc cctcctgccc gaggcggagc tgcccgcatc agcaccactt
     2161 agggaaggtc actcgcgagt gaaggcggcc ccaccccttt ccatgcctgc tgcgccgagc
     2221 tcctcacctg aaggtccagc cctcacctgc agccggggct ccccagaggc ccagacgtgg
     2281 tttccagccc gaggctgcgg gcagcccccc gcggtgtttg gctcagggag ggggcttctg
     2341 tcccttctgc tcccccgggt gagaggcagg ctgttcggag cgcccctggg gagcacccgt
     2401 ccccactcaa ctagtcagga gccttgcctt gtctcatcaa cgaggctttt aggattttcc
     2461 ctcgtgaatg atgagcagga cgagtgtgga atatttactg tttttgttat gctgcgttta
     2521 aaatgacagt gtaggttttt aaaaggaaac acaggcatag gtggcttatg gaacgcatcg
     2581 tgtatgccag gtaaaccaca gtcggaccca cggcctggcc cggcccgccg cctccagagc
     2641 agacagacgg acagacagcc aggtgtttga ggcctgtggt gggctgaggc gccacccctc
     2701 gcttcacctc ttgcctcaca gcccgttggg atttctgatc gggacgcagc cccctccctc
     2761 ccaccagcct agagctctgg ggcttgtcag gtgcagccct actcggggct gcaggctggc
     2821 cacctggcca tctccagcca gcctgcggac agagccaccc gaaggcacaa atcgttccct
     2881 gagtctcagg cagcattccc agcttttcgg ggcctgggct ccctgattgc ttctctggtt
     2941 ttccagttgg cttctcagct ggaaaatata aaagagcccc tcctggagag cagatctttt
     3001 ggaaacaaag agcaataact atatctcatt aagttccgct aactttaaaa atcttgtaat
     3061 gatgatggat taaaatgagg ccttttaaac tacaaacaac ctttttacta agctgacctc
     3121 ctgctccaga ggacggcggg tcacacgcac cttcactgtg caggggttgc tcgtgtgact
     3181 ttcccaggtt ttatcccttt cctctttttc tgcttcctcc caaaacaaaa ctaaagagga
     3241 ttctttggcg gtagctgggg tggccggctg gtgcattgat ctgtgaggac cagagagaaa
     3301 gcaccgtttc cctggggctg ctgcctctgc cctcagactg tggccgctgt gcccacggct
     3361 gatggggaga cgtgaacaga aggggcgcat ctgtggttgc ccacggcaga ctgtcatctg
     3421 agtgttatca ggtgccagcc gcctgtgtcc gagtgttgtt agggacctgg gtccctgctt
     3481 cctgtggacg tgcccctcct tccactctca tcctgttttg attttctaga tattagggcc
     3541 aagaaagatt ttcctaaatt attagtaaat gaggccgttt ctagcaaagc tgcttttgag
     3601 acttctcctc atcccgggtg ggagaccaca aaacctgtgc tgcagccgca ttctgtctgc
     3661 gtccccaccc ctgagtcgtc cacgtgtggg gcgtttccgc agcctggcaa tggcatttgt
     3721 ttaataaccg tacagatgtg ttttttaatt aactttgttt agtagttttt tagtatgttc
     3781 ttttcactga accatcgcag gtgtgctcgt accagtgttg acaccgggtg ttgtgtgtta
     3841 cattgggtcc cttcctccta cgtctttggt tgtcgtccgt gcctttgtaa acaaactctt
     3901 gaaccaggct tctgaatctg gtcatctgct tacttacatt gacacgtaga gatgtagtat
     3961 ccacactttt ctggctttca aggaaatttc cactactgag tggcataaaa aaggcttttt
     4021 taaaaaagaa ttctgatagt cataatttcc tgcatatcag cattaaaatc atatgccttg
     4081 gaaagctgag aatactcttg cacaatccaa aatgtgtctt taatttgtga atcaaacagt
     4141 aaaaaattgc tgcacgagga atgtcatcca catggagccg tgctcgtcgc cagcccttga
     4201 aatactttcc ccaaactggt gggctttccc tcctgtgcgg cgctgactgt cccatggacg
     4261 gtcatttata gacgggccag aggggctcaa agaaatgcaa catgtctttt tacatctgtc
     4321 cagggggtgt gcttcctgat gcctgaaagt attttcattg ttcccctggg ttggaaaaat
     4381 taaacaaaga tgttattaca ggtagaaact ctcctctctt tttgcctttg accaacattg
     4441 tgctaagggc tctgttctcc aaaacacgta catgccctgg ttgggacctc tttgttttct
     4501 tagtttataa ataagaacgt cccagctccc ctgaagagtt tgcctatttc tctatcctgg
     4561 ctgaggggcc gagagcagag tcatgaggtt gtgctgacca tcgcttggcg tactcaccct
     4621 gcagctcagg gtgtaaaacc ttccagtttg ctgtctctgt agtatctcct cctctcctcc
     4681 tgagggctga gattctgagt ttgatggcca ctgggtccat gcctagatgt ccaaactgag
     4741 ttggaaactg ttctaattgg caaagtcttt ggtgtttttt gggttttttt tttccagttt
     4801 tcatcagagg aaaactggca ttcagctgat gtgttatttc tagactgcag atgtgtgagt
     4861 agcgtctgca cccgcccagg gcggtgttgt gggcaccacg ttgcagaggg ccacagtgag
     4921 tgactttccc acactgaaaa acttgaaaat tatatcaata attgtctata tcagaaccaa
     4981 attatatgtg ctttatacca aacaaaactg cagagaacta aaagtacatc gtgcaaaatg
     5041 tctatagtgt tttgtatttc acttatttca gtatttatgt gattagatga attctttctg
     5101 gaaaatggtg gttaaatgac tgagtcactg ttaattctgc catggtgata catcgatgct
     5161 gtacagtgaa tcctgtggat gccccctggt tatttttgtc taaattaagc caccatggta
     5221 gcaactatct aggactcttg ttctgcgaaa gtaaaataaa tgttttcttc cttgtgtaa
//
LOCUS       XM_032645369            1774 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif containing 63 (TRIM63),
            mRNA.
ACCESSION   XM_032645369
VERSION     XM_032645369.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1774
                     /gene="TRIM63"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 17 Proteins, and 18%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760473"
     CDS             133..1194
                     /gene="TRIM63"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM63"
                     /protein_id="XP_032501260.1"
                     /db_xref="GeneID:116760473"
                     /translation="MDYKSSLIQDGNPMENLEKQLICPICLEMFTKPVIILPCQHNLC
                     RKCACDIFQAANPYWANRGGSVSMSGSRFRCPSCRHEVIMDRHGVYGLQRNLLVENII
                     DIYKQECCSRPLQKGNHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQ
                     SVFQGQKTELSNCISMLVAGNDRVQTIITQLEDSCRVTEENSHQVKEELSRKFDMLYA
                     ILDEKKSELLQRVTREQEEKLSFHEALIQQYRQQLEKSSKLVETAIQSLDEPGGAVFL
                     SGAKQLIRSIVEASKGCQLGKIEQGFENMDYFTLDLEHIADTLRAIDFETGEEEEEFI
                     EEENQEEEESTEGKEEGHQ"
     misc_feature    184..372
                     /gene="TRIM63"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(199..201,208..210,247..249,253..255,262..264,
                     271..273,355..357,364..366)
                     /gene="TRIM63"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
     misc_feature    487..612
                     /gene="TRIM63"
                     /note="B-box-type 2 zinc finger found in muscle-specific
                     RING finger protein 1 (MuRF-1) and similar proteins;
                     Region: Bbox2_MuRF1_C-II; cd19831"
                     /db_xref="CDD:380889"
     misc_feature    628..984
                     /gene="TRIM63"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; Region: CC_brat-like;
                     cl29238"
                     /db_xref="CDD:475168"
ORIGIN      
        1 aatttgggct ccaggagaag aaggcaaaga ggctccaggc gggtattctg tgacaaaggc
       61 aagaccccag atctgcttag agcgaggcag gtgaaggaga cagccaggtg ggtccccacg
      121 tctcctgaca gtatggatta taagtcaagc ctgatccagg atgggaaccc catggagaac
      181 ctggagaagc agctgatctg ccccatctgc ctggagatgt ttaccaagcc agtgatcatc
      241 ttgccatgtc aacacaacct ctgccggaag tgtgcctgtg acatcttcca ggctgcaaat
      301 ccctactggg ccaaccgggg tggctcagtg tccatgtctg gaagccgttt ccgatgcccc
      361 tcctgccgcc atgaagtgat catggaccgt catggagtgt acggcctgca gaggaatctg
      421 ctggtggaga acatcattga tatctacaag caggagtgct gcagtcggcc cctgcagaaa
      481 ggcaaccacc ccatgtgcaa ggagcacgaa gatgagaaaa tcaacatcta ctgcctcaca
      541 tgtgaggtgc ccacgtgctc catgtgcaag gtgtttggga tccacaaggc ctgcgaggtg
      601 gccccactgc agagtgtctt ccagggacaa aagactgagc tgagtaactg tatctccatg
      661 ctggtagcag ggaacgaccg tgttcagacc atcatcactc agctggagga ctcctgtcga
      721 gtgaccgagg agaacagtca ccaggtgaag gaagagctga gccggaagtt cgacatgctg
      781 tacgccatcc tggacgagaa gaagagtgag ctgctgcagc gggtcacgcg agagcaggag
      841 gagaagctca gcttccacga ggccctcatc cagcaatacc ggcagcaact ggagaagtcc
      901 agcaagctgg tggagacagc catccagtcc ctggacgagc ctggcggggc cgtcttcctc
      961 tcgggtgcca agcaactcat cagaagcatt gtggaagcgt ccaagggttg ccagctgggg
     1021 aagatagagc agggctttga aaacatggac tactttactt tggacttaga gcacatagca
     1081 gacaccctga gggccatcga ctttgagaca ggtgaggaag aggaggagtt tattgaagaa
     1141 gaaaatcagg aagaggaaga gtccacagag gggaaggaag aaggacacca gtaaggagat
     1201 ggatgaggga gagaccgtct agatgcagag agactgggga gggtggggat gggcccagct
     1261 accttggtga caggcccagg gtgggagggg tcagggcccc cggaggggca atggggaggt
     1321 gtgtcttctc tctgctcaga gagcaggaac caggagcagg acctcaccgc cgtgtccagc
     1381 atcatgaacc agagttggag acgtgcttga aacaaccaca ctggatactt ttctacgttg
     1441 gtgcaaaatg gaatattctg tacattttta aaatgtgatt tttgtatata cttgtatatg
     1501 tatgccaatt tggtgctttt tgtaaaggaa cttttgtatg ataatgcctg gtcatcgtgt
     1561 gatggacgat tgttataaag aagggaaaga agccaggttg gtacagccac ccacttcctc
     1621 tccttggtgg gaggggctcc gtagcactca cagacctagg aaaggataag gtactgtatt
     1681 tcagtgtcta ttcctgacat aagggacagc gactgagttc gtgttacttg ttgttttaat
     1741 aaatgcacag cgctttcttc catttattac caaa
//
LOCUS       XM_032645375             985 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylethanolamine-binding protein
            1-like (LOC116760482), mRNA.
ACCESSION   XM_032645375
VERSION     XM_032645375.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 17% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..985
                     /gene="LOC116760482"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 82% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760482"
     CDS             1..657
                     /gene="LOC116760482"
                     /codon_start=1
                     /product="phosphatidylethanolamine-binding protein 1-like"
                     /protein_id="XP_032501266.1"
                     /db_xref="GeneID:116760482"
                     /translation="MAIVKTRHHASESKTAIMGGRRSQLPLEALPGKNQVSLWSGPLS
                     LQEVDERPQHALQVKYGRAELDELGKVLTPTQVKNRPTSIAWDGLDPGKLYTLVLADP
                     DAPSRKDPKYREWRYFLVVSMKGNNLSSGTVLSDYMGSGSPKGTGLHRYAWLVYEQDR
                     PRKCDEPILSNRSTEERGEFKGANFRKKYQLRAPVVGACYQAEWDDYLPKLYEQLSGK
                     "
     misc_feature    166..606
                     /gene="LOC116760482"
                     /note="PhosphatidylEthanolamine-Binding Protein (PEBP)
                     domain present in eukaryotes; Region: PEBP_euk; cd00866"
                     /db_xref="CDD:176644"
     misc_feature    order(301..303,343..345,349..351,418..429,445..447,
                     451..453)
                     /gene="LOC116760482"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:176644"
ORIGIN      
        1 atggcaattg taaagaccag gcatcacgcc tcggagagca aaactgccat catggggggc
       61 cgaagatcac agctgcctct tgaagcctta cctggaaaga accaggtgtc actgtggtcc
      121 gggcctttga gcctgcagga agtggacgag aggccacagc acgcgctgca ggtcaaatac
      181 ggcagggcgg agcttgacga gctgggcaaa gtgctgacac ccacccaggt gaagaaccgg
      241 cccaccagca ttgcatggga tggccttgat ccaggtaaat tgtatacctt ggtcttggca
      301 gacccggatg ctcccagcag gaaggacccc aaatacaggg aatggcgcta tttcctggtg
      361 gtcagcatga agggcaacaa cctcagcagt ggcacggtcc tctccgatta tatgggctct
      421 gggtctccca agggcacagg ccttcaccgc tacgcctggc tggtttacga gcaggacagg
      481 ccacggaagt gtgatgagcc cattctcagc aaccgatcta cagaggagcg tggcgaattc
      541 aagggggcga atttccgcaa aaagtaccag ctccgggctc cggtggtcgg cgcgtgttac
      601 caggccgaat gggatgacta tctgcccaaa ctgtatgagc agctgtctgg gaagtagagg
      661 aaagccagga gatggacacg gtcccagagt tcccaagcag tgtttcagtt tagtgatgca
      721 tgtagatttc tccccttccc cctgcctgag ccctgagcgg tcagatttag gtttagggtg
      781 acttttcctt ctgtctgtcc tctttaattc tagggagttt acgttttgat caaatttgaa
      841 ctccgttttg gtgggggata ttttgatact gggatgaggt catcaaaatg ttaatataag
      901 aataacaacc cagacattaa agaagaaaaa aattctggta aaaagaccag gtctgcagta
      961 ttagaacaga gtatcaaaga atctt
//
LOCUS       XM_032645386            2505 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus L-amino-acid oxidase-like (LOC116760484),
            mRNA.
ACCESSION   XM_032645386
VERSION     XM_032645386.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2505
                     /gene="LOC116760484"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760484"
     CDS             14..1603
                     /gene="LOC116760484"
                     /codon_start=1
                     /product="L-amino-acid oxidase-like"
                     /protein_id="XP_032501277.1"
                     /db_xref="GeneID:116760484"
                     /translation="MSCRAMVKMRGILILGLLLATPSCLGYDEDLVKCFQDPEYESIL
                     VTAQEGLHTSPLPKRVVVVGAGMSGLTAAKALQDSGHQVTILEASDHVGGRVFTFRNE
                     EEGWYCELGPMRIPKSHRLVHTYVRKLGLKLNKFFQYDGNTWYLINRKRYRTEEVKAN
                     PELLGYSMNQREKGKNAMNLFYQSIAKLRVSLKKFNCSHLMSFYDSYSTKAYLLKKGM
                     LSRGAVKMIGDVMNEDAGYYKSLLEALRTDMVFTSNDFSEITGGFDQLPKALNASLKP
                     GTILLGSKVETVVRDGPEVRISYRVGESNSTLPTLTADFVIISASAKATRLITFEPPL
                     SRDKMDALRSVHYTSASKVVLACNESFWERDGIRGGVSITDRPSRYIYYPSHSLPSGK
                     GVLLASYTVDDDSLFFIPMKNDQVVDIVLEDLAAVHQIPKEELRRMCPSSVIKHWSLD
                     PLIMGAFTEFTPYQFVDYSQQLFQPEGRIHFAGEHTCLPHAWIDTAIKSGLRAARNIQ
                     AAVDKEAMGKQKTFTNTQNHF"
     misc_feature    164..1546
                     /gene="LOC116760484"
                     /note="Monoamine oxidase [Amino acid transport and
                     metabolism]; Region: YobN; COG1231"
                     /db_xref="CDD:440844"
ORIGIN      
        1 tcccgggctc agcatgagct gcagggccat ggtcaagatg agaggaatcc tgatcttggg
       61 gctcttgttg gctactccca gctgccttgg ctacgatgag gacttggtca agtgcttcca
      121 ggaccccgaa tacgagtcta tcctggtcac agcccaggag ggcctccaca cctccccgct
      181 gcccaagcgt gtggtggtag tgggagctgg catgtcaggg ctaacggcag ccaaggccct
      241 gcaggactcg ggccaccagg taaccatcct ggaagccagc gaccatgtcg ggggtcgagt
      301 gttcacattc aggaatgagg aagagggctg gtactgtgaa ctggggccca tgcgaatccc
      361 gaagtcccac aggttggtcc acacctatgt caggaagctg ggcctgaagc taaacaagtt
      421 cttccagtac gatggcaaca cctggtacct catcaacaga aaacgctatc gtactgagga
      481 ggtgaaggcc aacccagagc tcctaggcta ttccatgaac cagagagaaa agggcaagaa
      541 tgctatgaat ctcttctacc agtccattgc caagctcaga gtaagtctga aaaaattcaa
      601 ctgcagccac ctgatgtcct tttatgattc ttactccacc aaggcttacc tgctgaagaa
      661 agggatgctg agccgaggag cagtaaagat gatcggggat gtgatgaatg aggatgctgg
      721 atactataag tccctcctgg aggcccttcg gactgacatg gtcttcacaa gcaatgactt
      781 ttccgagatc actggaggct ttgaccagct ccccaaagcc ctcaacgcca gcttgaagcc
      841 tggcaccatc cttctgggct ccaaggtaga gacagtagtg agggatgggc ctgaggtccg
      901 gatttcctac cgggtgggtg aatccaactc gacactgccc accctcaccg cggactttgt
      961 catcatctcc gcctcggcca aggccacgag actcatcacc tttgagcccc cactctcccg
     1021 ggacaagatg gatgcgctcc gctcagtgca ttataccagt gccagcaagg tagttctggc
     1081 ctgcaacgag tccttctggg agcgggatgg catccggggt ggagtttcca tcaccgaccg
     1141 gccctcgcgt tacatctact accccagcca tagcctcccc agcggcaagg gggtcctgct
     1201 ggcctcctac accgtggacg acgattccct cttcttcata cccatgaaga acgaccaggt
     1261 ggtagatatc gtcctggagg acctggcggc tgtgcaccag atccccaagg aggagctgcg
     1321 gcgcatgtgc ccctcttctg tgatcaagca ctggtctctg gaccccctca taatgggcgc
     1381 cttcactgag ttcacaccct accaattcgt ggactattcg cagcagcttt tccagccaga
     1441 gggccgcatc cactttgctg gcgagcacac ctgcctgccc cacgcctgga tagacactgc
     1501 catcaagtct ggcctccgag cagccaggaa catccaggct gccgtggaca aagaggccat
     1561 ggggaaacag aagaccttca ccaacaccca gaatcatttc taacccgaag agaaatccca
     1621 gaggggatct ggaatgaatc aggctgcaag gtgggagttg gaggcagaga ccctggagag
     1681 atgtgccatt agtccccctg cccacgaaga gcccgaaaat accagagaac ccagctggca
     1741 agtccacccc ctttccggct tctcactcct gccagccctt gagaaggatc agcagagtca
     1801 gggtatttgg agggataagg aaaaaaacaa ggatggactg tgctagaatc agcctttagc
     1861 ttgcataata gtgacaagca gaaaagaaag ttttcaacaa cacccaaatt tctgtcctct
     1921 acaactagaa gcccctaaag aaacagacaa acccaaatca gagcaatgtt aaaccacaga
     1981 ttggccacat gaacccacag cacagcaaac cccatcattg cgtgcttgag ccaggggcct
     2041 cacatcttgg cccagctgaa gtcgaggcgg atgggagaga tgcgttcttt tttgcccttt
     2101 ttgagcctgc aagagcagga cttggcttcc tagagactat ctcctggccc atggactttt
     2161 cctctctacc ctgacctctt catcaccaac cagaactcac cgccctgccc ctgcctgtcc
     2221 agtccacaca tccccctggg aggacaccaa gttcattcta catgctccct acccactctg
     2281 ttctgcacta acacctgccc tgtccttgca cgcccaactg aaattattcc ctctccccaa
     2341 atccttcctt aatggccaca ctcagacccc aggggtctct ttcctttgaa ccacaaccct
     2401 tcttacctag agtcccaaac atttgaactg tggatcttct tgtgctgtta tatgttattt
     2461 atccaagtag acaaaaggaa gaagtaaata aagtggtaaa ccctc
//
LOCUS       XM_032645402            3535 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sestrin 2 (SESN2), mRNA.
ACCESSION   XM_032645402
VERSION     XM_032645402.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3535
                     /gene="SESN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760488"
     CDS             385..1800
                     /gene="SESN2"
                     /codon_start=1
                     /product="sestrin-2"
                     /protein_id="XP_032501293.1"
                     /db_xref="GeneID:116760488"
                     /translation="MIVADSECRAELKGYLPGAGEEQRESRVRRGPRGPSAFIPVEEV
                     LREGAESLEQHLGLEALMSSGRVDNLAVVMGLHPDYFTSFWRLHYLLLHTDGPLANSW
                     RHYIAIMAAARHQCSYLVGSHMAEFLQTGGDPEWLLGLHRAPEKLRKLSEINKLLAHR
                     PWLITKEHIQALLKTGEHSWSLAELIQALVLLTHCHSLASFIFGCGILPEGDPEGSPA
                     PQAPSPPSEQSTPPSRDPLNHSGDFEAARDVEALMERMRQLQESLLRDEGASQEEMES
                     RFELEKSESLLVTPSADILEPSPNSDMLCFVEDPTFGYEDFTRRGTQAPPTFRAQDYT
                     WEDHGYSLIQRLYPEGGQLLDEKFQAAYSLTYNTIAMHSGVDTSMLRRAIWNYIHCVF
                     GIRYDDYDYGEVNQLLERNLKVYIKTVACYPEKTTRRMYNRFWRHFRHSEKVHVNLLL
                     LEARMQAALLYALRAITRYMT"
     misc_feature    484..1794
                     /gene="SESN2"
                     /note="PA26 p53-induced protein (sestrin); Region: PA26;
                     pfam04636"
                     /db_xref="CDD:461375"
ORIGIN      
        1 cgggcagagc ggagctgctg gtgtcagagc ccggagagcg ctggcagttc cgcggtgggg
       61 atgctgagga gcgctgggtt tgcgagcagc cgtggccact gcggacttcc gaggcgctcc
      121 gggccgtgaa aacccctgcg ccgcggccaa tcccaggctc ccgaggccat tcaccatcca
      181 gaagccagac gagcggggag tccagcgcag cggcggccgt tcccggatcc tgggctttcg
      241 gagccttctg gaaccccgag agataccccg gggctctaga acctccccat cggccagcag
      301 tcccggcttc ctgcgcgcgt cggtccgaaa gcccctcggg tgcacgggcg gtcggcgagc
      361 cgcggctggg tcctggcgca caccatgatc gttgcggact ccgagtgccg cgccgagctg
      421 aagggctacc tacccggggc cggagaggag cagagggaga gccgggttcg gcgaggccct
      481 cgagggccca gcgccttcat tccagtggag gaggtccttc gggagggagc cgagagcctt
      541 gagcaacacc tggggctgga ggcgctgatg tcctccggga gggtggacaa cctggcagtg
      601 gtgatgggcc tgcaccccga ctactttacc agcttttggc gcctgcacta cctgcttctg
      661 cacacggatg ggcccttggc caattcctgg cgccactaca tcgccatcat ggccgccgcc
      721 cgccaccagt gttcctacct ggtgggctcc cacatggctg agtttctgca gactggcggt
      781 gaccctgagt ggctgcttgg cctccaccgt gcccctgaga agctgcgcaa gctcagcgag
      841 atcaacaagc tgctggctca taggccgtgg ctcatcacca aggagcacat ccaggccttg
      901 ctgaagacag gcgagcacag ctggtccctg gccgagctca tccaggccct ggtccttctc
      961 acccactgcc actcgctagc ctccttcatc ttcggctgtg gcatcctccc tgagggggac
     1021 cctgagggaa gccccgcccc ccaggcccct tcacccccca gtgagcagag cacacccccc
     1081 agcagggacc cactgaacca ctctggggac tttgaggccg cccgcgacgt ggaagctctg
     1141 atggagcgca tgaggcagct gcaggagagc ctgctgcggg atgagggggc ctcccaggag
     1201 gagatggaga gccgctttga gctggagaag tcagagagcc tgctggtgac cccctcagcg
     1261 gacatcctgg agccctctcc aaactcagac atgctgtgct ttgtggaaga ccccactttc
     1321 ggatacgagg acttcacccg gcgggggact caggcgcccc ccaccttccg tgcccaggat
     1381 tatacctggg aagaccatgg ctattcactg atccagcggc tctaccccga gggtgggcag
     1441 ctgctggatg agaagttcca ggcagcctat agcctcacct acaataccat tgccatgcac
     1501 agcggagtag atacctccat gctccgcagg gccatctgga attacatcca ctgcgtcttt
     1561 ggcatcagat atgatgacta tgactacgga gaggtgaacc agctcctgga gcggaacctc
     1621 aaggtctata tcaagacagt ggcctgctat ccagagaaga ccacccgaag aatgtacaac
     1681 cgcttctgga ggcacttccg ccactcagag aaggtccacg tgaacttgct gcttctggag
     1741 gcccgcatgc aagccgccct gctctatgcc ctccgtgcca tcacccgcta catgacctga
     1801 ctcgtgtgca ggacctgggc ctggagcagc tgaccctggg ggcatccttc tccctgcaag
     1861 gacttctctg tctggagaca gaccctaagc ctgcctgtcc cacgcccacc caccctattc
     1921 tggtggtggg cctgtgtgtg atgtgcagcc cctgagccac accctcctca ctggaatgga
     1981 caggatcatt gcactgactc tgggatctca gctctgcccc tgggagctgg aagaggacta
     2041 gcaaatctcc aggcgccaag gcccttcttc ctgcccctac ccccagaggc caagggcaca
     2101 ggaaggaaaa tgggctgagc tcagacttgt gtgccagcag gcaggggccc gggcagcaca
     2161 agtactttgg ccttcctggc ctgggaagtc cctggctggt ccccaaggga gaggggcaaa
     2221 cacctccagg gactgacact ccaagcggct ttgcctttcc tcctgcttcc tcattctcag
     2281 acttcattac ctcccacctg ccattcatcc atcaatgtga aagtcagggt cacagctggt
     2341 ttgtgtgtct ggctccccaa aagcctgttc tgttaggcag cctgcaggcc tctcgtcccc
     2401 tggttgcccc agtcctagtt cagttccttt gacctccttt gtttgccctt ttaccctttt
     2461 ctcccacacc tggtggtatg aggccccagg agagagacca agcacatcaa acaagcagat
     2521 tatctctaga gagtctggac tctctgttgg tcactttgcc tttagaagag ggagtattat
     2581 attatacatt ctctgtattt cggtttttta tgggtgaggt tcttcagggc ctcaacccta
     2641 gagccatagt cagtgtctga gaggacaggg aaaaatctgt cctccccaga gctgcacctg
     2701 ccctgcagaa gctggcaccc cactttgcta tctcccatgg ctctgccaca aacatttgcc
     2761 aaaaaagcaa gcctttctag gtggtttagg tgacacatgg ctccggggag aggcaggagg
     2821 ccccagagtt cttgtgtggg ccctggcact ggccaggtga cctccatttc cacagttgca
     2881 gactgagggg tagtttctga gatatttgag ccttcactca gattctgagg ccagcagcca
     2941 actgcaatct tgcaggatct tgagggcttc tggggagccc cccctcttgt agtcagtctc
     3001 tccgggctac ctaccaagga cctccccacc cccatcccaa tttctgtccc ttctcctcgg
     3061 ttctaggtgg attgcttgaa ggcagaagca gccgaggact gatcccaggc actttctgta
     3121 gcaaatgagc tgtgaattat gacttccctt gcccttcttc cggcagtatg tgcctcccct
     3181 ctgaccagtt gggaggtgac tgaagaaagg caagggccaa gctgctgctg cttctgaccc
     3241 tcccctctgg ggtggggcag gagaggagcc tggtcattgt gccacatttc atacccgtgc
     3301 aggcatgggc aagcgactgg cacccccttc aggcctcaaa gccctccctg caatgaagct
     3361 gggcaggaga gaagaggccc cagcattggg gtttggattc cagaggggac aagatgactg
     3421 tacgtgtccc cgggtgggtg gggaggagta ttcagtgttc aagtgcagaa atctttgcct
     3481 ttgctaccag ctctgtatga tgagaaacaa aagttcactg aggttttgtt ttgta
//
LOCUS       XM_032645425            1906 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 3 (MCOLN3), transcript variant
            X1, mRNA.
ACCESSION   XM_032645425
VERSION     XM_032645425.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1906
                     /gene="MCOLN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 Proteins, and 62%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760500"
     CDS             1..1659
                     /gene="MCOLN3"
                     /codon_start=1
                     /product="mucolipin-3 isoform X1"
                     /protein_id="XP_032501316.1"
                     /db_xref="GeneID:116760500"
                     /translation="MANPEAVISSCSSHEEENRCTFNQHTSPSEELLLEDQMRRKLKF
                     FFMNPCEKFWARGRKPWKLAIQILKMAMVTIQLIFFGLSNQMVVAFKEENTIAFKHLF
                     LKGYIDRMDDTYAVYTQSDVYDQIIFAVNQYLQLRNISVGNHAYENKGTEQSAMAICQ
                     HFYKQGNICPGNDTFDIDPEIETECFFVAPDEPFHVGTLEEKLKLLLDFHRLITVELQ
                     FKLKAINLQTIRHHELPDCYDFTLTITFDNKAHSGRIKISLDNDISIRECKDWHVSGS
                     IQKNTHYMMIFDAFVILICLASLILCVRSVVKGLQLQQEFVNFFLLHYKKEVSVSDRM
                     EFVNGWYIMIIISDILTITGSILKMEIQAKSLTSYDVCSILLGTSTMLVWLGVIRYLG
                     FFQKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNMVSECL
                     FSLINGDDMFATFANMQQKSYLVWLFSRIYLYSFISLFIYMILSLFIALITDTYETIK
                     HYQQDGFPETELRIFISECKDLPNSGKYRLEEDPAVSIFCCCKK"
     misc_feature    325..828
                     /gene="MCOLN3"
                     /note="extracytosolic/lumenal domain (ELD) found in
                     transient receptor potential channel mucolipin 3 (TRPML3);
                     Region: ELD_TRPML3; cd21072"
                     /db_xref="CDD:410968"
     misc_feature    order(325..327,331..333,340..342,349..357,412..417,
                     421..435,442..444,487..489,502..513,517..531,535..537,
                     625..630,664..666,670..672,676..681,688..690,706..711,
                     748..765,796..798,802..822)
                     /gene="MCOLN3"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:410968"
     misc_feature    <1120..1521
                     /gene="MCOLN3"
                     /note="Polycystin cation channel; Region: PKD_channel;
                     pfam08016"
                     /db_xref="CDD:462341"
ORIGIN      
        1 atggcaaatc ctgaggctgt tataagtagc tgcagctctc atgaagaaga aaatcgctgc
       61 acttttaacc agcatacatc tccctctgag gagcttctat tagaagacca gatgaggcga
      121 aaactcaaat tttttttcat gaatccttgt gagaagttct gggctcgagg tagaaaaccg
      181 tggaaacttg ccatacaaat tctaaaaatg gcaatggtaa ccatccagct gatctttttt
      241 gggctaagta accagatggt ggtagctttc aaggaagaga acactatagc attcaaacac
      301 ctcttcctaa aaggatatat agaccgaatg gatgacacat atgcagtgta tacacaaagt
      361 gatgtatacg atcagatcat cttcgcagtg aaccagtact tgcagctacg caacatctca
      421 gttgggaatc acgcttacga gaacaagggc acggagcagt cagccatggc catctgtcag
      481 cacttctaca agcaaggaaa catctgtcct ggaaatgata cctttgacat tgatccagaa
      541 attgaaactg aatgtttctt tgtggcgcca gatgaacctt ttcacgttgg aacactagaa
      601 gaaaaactca agttactgct ggactttcac agactcataa cagtggagct gcagtttaaa
      661 ttgaaggcca ttaatctgca gactattcgt catcacgagc tcccggattg ttacgacttt
      721 actctgacta taacatttga caacaaagcc cacagtggaa gaattaagat aagtttagat
      781 aatgacattt ccatcagaga atgtaaagac tggcacgtat ctggatcaat tcagaagaac
      841 actcattaca tgatgatctt tgatgccttc gttattctga tatgcctggc ttcgttaatc
      901 ctgtgtgttc gatctgtggt gaaaggactt cagcttcagc aggaatttgt caattttttc
      961 ctcctccatt ataagaagga agtttctgtt tctgatcgaa tggaattcgt caatggatgg
     1021 tatattatga ttattattag tgacatatta accattactg gatcaattct gaaaatggaa
     1081 atccaagcta agagtctgac aagttatgat gtctgtagca tacttcttgg tacctctacc
     1141 atgctggtgt ggctaggagt catccgatac cttggtttct ttcagaaata caatctccta
     1201 attctcaccc ttcaggcagc gctgcccaac gtcatcaggt tctgctgctg tgcagccatg
     1261 atctatttag gctactgctt ctgtggatgg attgtgctgg ggccttacca cgataagttc
     1321 cgttctctga acatggtctc tgagtgcctt ttctcgctga taaatggaga tgatatgttt
     1381 gccacatttg caaacatgca gcagaagagt tacttggtct ggctctttag caggatttac
     1441 ctctactcat tcatcagcct ctttatatac atgattttaa gtctttttat tgcactgatc
     1501 actgatacgt atgaaacaat taagcattac caacaagatg gcttccctga gactgaactt
     1561 cgtatattta tatcagagtg caaagatctg cccaattctg gaaagtacag attagaagaa
     1621 gaccctgcag tatctatatt ctgctgttgt aaaaaatagc tattaggcta atctatgccc
     1681 tggagggaac tataatgtgt agctgagttg ggagacaaaa tggatatttt aagatcagat
     1741 gtagtatgtt tgaagactac tattttgagc aaattgatgg ctgtaattca tcaagaactg
     1801 tgtttatatt ttaaagcata atgtctttgc agctttaggc tgggcttatt tttatttttt
     1861 aaacctaact ttgatgaggg aaactgttgg attcttgtcc tgttta
//
LOCUS       XM_032645433            1738 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 3 (MCOLN3), transcript variant
            X2, mRNA.
ACCESSION   XM_032645433
VERSION     XM_032645433.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1738
                     /gene="MCOLN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 50% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760500"
     CDS             1..1491
                     /gene="MCOLN3"
                     /codon_start=1
                     /product="mucolipin-3 isoform X2"
                     /protein_id="XP_032501324.1"
                     /db_xref="GeneID:116760500"
                     /translation="MANPEAVISSCSSHEEENRCTFNQHTSPSEELLLEDQMRRKLKF
                     FFMNPCEKFWARGRKPWKLAIQILKMAMVTIQYLQLRNISVGNHAYENKGTEQSAMAI
                     CQHFYKQGNICPGNDTFDIDPEIETECFFVAPDEPFHVGTLEEKLKLLLDFHRLITVE
                     LQFKLKAINLQTIRHHELPDCYDFTLTITFDNKAHSGRIKISLDNDISIRECKDWHVS
                     GSIQKNTHYMMIFDAFVILICLASLILCVRSVVKGLQLQQEFVNFFLLHYKKEVSVSD
                     RMEFVNGWYIMIIISDILTITGSILKMEIQAKSLTSYDVCSILLGTSTMLVWLGVIRY
                     LGFFQKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNMVSE
                     CLFSLINGDDMFATFANMQQKSYLVWLFSRIYLYSFISLFIYMILSLFIALITDTYET
                     IKHYQQDGFPETELRIFISECKDLPNSGKYRLEEDPAVSIFCCCKK"
     misc_feature    226..660
                     /gene="MCOLN3"
                     /note="extracytosolic/lumenal domain (ELD) found in
                     transient receptor potential channel mucolipins (TRPMLs);
                     Region: ELD_TRPML; cl41763"
                     /db_xref="CDD:425394"
     misc_feature    order(244..267,319..321,337..342,349..351,355..357,
                     496..498,508..513,532..537,577..579,583..597,610..618,
                     634..639)
                     /gene="MCOLN3"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:410965"
     misc_feature    <952..1353
                     /gene="MCOLN3"
                     /note="Polycystin cation channel; Region: PKD_channel;
                     pfam08016"
                     /db_xref="CDD:462341"
ORIGIN      
        1 atggcaaatc ctgaggctgt tataagtagc tgcagctctc atgaagaaga aaatcgctgc
       61 acttttaacc agcatacatc tccctctgag gagcttctat tagaagacca gatgaggcga
      121 aaactcaaat tttttttcat gaatccttgt gagaagttct gggctcgagg tagaaaaccg
      181 tggaaacttg ccatacaaat tctaaaaatg gcaatggtaa ccatccagta cttgcagcta
      241 cgcaacatct cagttgggaa tcacgcttac gagaacaagg gcacggagca gtcagccatg
      301 gccatctgtc agcacttcta caagcaagga aacatctgtc ctggaaatga tacctttgac
      361 attgatccag aaattgaaac tgaatgtttc tttgtggcgc cagatgaacc ttttcacgtt
      421 ggaacactag aagaaaaact caagttactg ctggactttc acagactcat aacagtggag
      481 ctgcagttta aattgaaggc cattaatctg cagactattc gtcatcacga gctcccggat
      541 tgttacgact ttactctgac tataacattt gacaacaaag cccacagtgg aagaattaag
      601 ataagtttag ataatgacat ttccatcaga gaatgtaaag actggcacgt atctggatca
      661 attcagaaga acactcatta catgatgatc tttgatgcct tcgttattct gatatgcctg
      721 gcttcgttaa tcctgtgtgt tcgatctgtg gtgaaaggac ttcagcttca gcaggaattt
      781 gtcaattttt tcctcctcca ttataagaag gaagtttctg tttctgatcg aatggaattc
      841 gtcaatggat ggtatattat gattattatt agtgacatat taaccattac tggatcaatt
      901 ctgaaaatgg aaatccaagc taagagtctg acaagttatg atgtctgtag catacttctt
      961 ggtacctcta ccatgctggt gtggctagga gtcatccgat accttggttt ctttcagaaa
     1021 tacaatctcc taattctcac ccttcaggca gcgctgccca acgtcatcag gttctgctgc
     1081 tgtgcagcca tgatctattt aggctactgc ttctgtggat ggattgtgct ggggccttac
     1141 cacgataagt tccgttctct gaacatggtc tctgagtgcc ttttctcgct gataaatgga
     1201 gatgatatgt ttgccacatt tgcaaacatg cagcagaaga gttacttggt ctggctcttt
     1261 agcaggattt acctctactc attcatcagc ctctttatat acatgatttt aagtcttttt
     1321 attgcactga tcactgatac gtatgaaaca attaagcatt accaacaaga tggcttccct
     1381 gagactgaac ttcgtatatt tatatcagag tgcaaagatc tgcccaattc tggaaagtac
     1441 agattagaag aagaccctgc agtatctata ttctgctgtt gtaaaaaata gctattaggc
     1501 taatctatgc cctggaggga actataatgt gtagctgagt tgggagacaa aatggatatt
     1561 ttaagatcag atgtagtatg tttgaagact actattttga gcaaattgat ggctgtaatt
     1621 catcaagaac tgtgtttata ttttaaagca taatgtcttt gcagctttag gctgggctta
     1681 tttttatttt ttaaacctaa ctttgatgag ggaaactgtt ggattcttgt cctgttta
//
LOCUS       XM_032645443             888 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus eukaryotic translation initiation factor
            5A-1-like (LOC116760514), mRNA.
ACCESSION   XM_032645443
VERSION     XM_032645443.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..888
                     /gene="LOC116760514"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760514"
     CDS             202..666
                     /gene="LOC116760514"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor
                     5A-1-like"
                     /protein_id="XP_032501334.1"
                     /db_xref="GeneID:116760514"
                     /translation="MADDLDFETGDAGASATFPMQRSALRKNGFVVPKGRPCKIVEMS
                     ASKTGQHGHAKVHLVGLDIYTGKKYEDICLSTHNMDVPSIKRNDFQLIGIQDGYLSLL
                     QDSGEVREDLRLPEGALGKEIEQKYGGGEEILIMVLSATTEDAAAAVKAVAK"
     misc_feature    202..633
                     /gene="LOC116760514"
                     /note="eukaryotic translation initiation factor 5A;
                     Provisional; Region: PLN03107"
                     /db_xref="CDD:215580"
ORIGIN      
        1 cctggtgtaa cattctgtga ttgtctagac cccaacctcc ccgcaaagcc ttcaatcaaa
       61 ttagcacaat cccacttaat taagacccgt gtgcagcagc ggcggcggcg gcagcgggct
      121 ctgaggcagc ggttgggctc gccgcgagtg aacggggtcg agtcagtgca ttcgcgcgag
      181 ctggaatcga agcctcttaa aatggcagat gatttggact tcgagaccgg agatgcgggg
      241 gcctcagcca ccttcccgat gcagcgctca gctttacgta agaatggctt tgtggtgccc
      301 aaaggccggc catgtaagat tgtggagatg tcagcctcca agactggcca gcacggtcat
      361 gccaaggtcc atctggttgg tcttgacatc tatactggga agaaatatga agatatctgc
      421 ctgtcaactc ataatatgga tgtccccagc atcaaaagga acgatttcca gctgattggc
      481 atccaggatg ggtatctatc actgctccaa gacagcgggg aggtgcgaga ggacctccgt
      541 ctgcctgagg gagctcttgg caaggagatt gagcagaagt acggtggtgg agaagagata
      601 ttgatcatgg tgctgtctgc cacaacagag gacgcggctg ctgcagtcaa ggccgtggcc
      661 aaataactgg ctcccagggt ggctgtggtg gcagcagtga tcctccagcc tgcagaggcc
      721 ccctccccga gcctggccca gctctggccc agcccttggc tggactcctc ccacacaatt
      781 tatttgacat tttattttgg tttcccctac accctcaatc tgccggggag cccctgccct
      841 tcaccctgct cccttggcca ggagtgagtg aaccacggcc ttggtgaa
//
LOCUS       XM_032645469            1429 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor superfamily member 4
            (TNFRSF4), transcript variant X1, mRNA.
ACCESSION   XM_032645469
VERSION     XM_032645469.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1429
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1429
                     /gene="TNFRSF4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116760523"
     CDS             404..1243
                     /gene="TNFRSF4"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 4 isoform X1"
                     /protein_id="XP_032501360.1"
                     /db_xref="GeneID:116760523"
                     /translation="MRVGAQPPRAPGSAFLLLGLALGAAARLRCVGDTYPSGSRCCKE
                     CQPGYGMESRCTRARDTVCRPCEPGFYNEAVNYEACKPCTQCNQRSGSEPKQRCTPTR
                     DTVCGCRPGTQPQDGYGYKRGVDCAPCPPGHFSPGNDQACQPWTNCTSLGKRTLQAAS
                     NSSDAVCEDRSPRLTPAWETQGPAARSTPAQPTTTWPRASQGPSTPHAEPPKGPELAA
                     VLGLGLGLGLLGPVAAALALLLHHRAWRPTPNAPKPPGECSRFRTPIQEEHADANSSL
                     AKI"
     misc_feature    491..916
                     /gene="TNFRSF4"
                     /note="Tumor necrosis factor receptor superfamily member 4
                     (TNFRSF4), also known as CD134 or OXO40; Region: TNFRSF4;
                     cd13406"
                     /db_xref="CDD:276911"
     misc_feature    491..592
                     /gene="TNFRSF4"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276911"
     misc_feature    order(497..511,533..535,563..565,632..637,644..646)
                     /gene="TNFRSF4"
                     /note="polypeptide ligand binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276911"
     misc_feature    599..721
                     /gene="TNFRSF4"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276911"
     misc_feature    725..904
                     /gene="TNFRSF4"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276911"
ORIGIN      
        1 atgcctggcc gaaggggctc cagtttcctg tgagacagga gtgggagggg tccaggggga
       61 ggggtcggtg cagaccggct gggctggagg acctgggctg gtggccctgg caggggtcag
      121 ggggctgcgg gtcctcactc aggccctgga tctgcacact gcagctgctg gctgggccaa
      181 gcctgaggcc tacggccgtt atcgcagggt tgggggcctt ggcgcccagg gcagaagaga
      241 agcccagggc cgggacacag gctgccttcc agtgcttcct ggggcctcct tcctcctggt
      301 cccctcctcc tgccctcccc acccctcccc cgcagccctt atagccacat cctgcaagga
      361 aaaaccccag actcccgagc tgtggggctg agagcagccg agaatgcgcg tgggagccca
      421 gccacccagg gcgccgggct cggccttcct gctcctgggg ctcgcgctgg gcgctgcggc
      481 ccggctcaga tgtgttgggg acacctaccc cagtggcagc aggtgctgta aggagtgcca
      541 gccaggttat gggatggaga gccgctgcac ccgcgcccgg gacacggtgt gccgtccgtg
      601 tgagcccggc ttctacaacg aggcggtcaa ctacgaggcc tgcaagccct gcacacagtg
      661 caaccagaga agtgggagcg agcccaagca gagatgcaca cccacgagag acacggtctg
      721 cggctgcagg ccgggcaccc agccccagga cggctatggc tacaagcgtg gagttgactg
      781 tgccccgtgc ccaccaggac acttctcccc gggcaacgac caggcctgcc agccctggac
      841 caactgcacc tcattaggaa agcgaacact gcaggcggcc agcaacagct cggacgctgt
      901 ctgtgaggac aggagccccc gactcacacc agcctgggag acccagggcc ccgcagcccg
      961 gtccaccccc gctcagccca ccaccacctg gccgagggcc tcacaggggc cctccacgcc
     1021 ccacgcagag ccccccaagg gccccgagct ggccgctgtc ctgggcctgg gcctgggcct
     1081 gggcctgctc ggccccgtgg ctgccgcgct ggccttgctc ctgcaccaca gggcctggag
     1141 gccgacgccc aacgccccca agccccccgg tgagtgctct cgcttccgga cccccatcca
     1201 agaggagcat gccgacgcca actccagcct ggccaagatc tgagcaatgt ccgctggcat
     1261 aggagccggt gcccctcccc aggcgggggc cccccgacgc aggccgtccc accccgtcac
     1321 ccccggacct tggcgccctg tccccccgcc ctgtgccgtt ttaggcgctc ctgggctggc
     1381 atcctgggcc ctgctatgta tgctgtgcgt actccccacc cagggtggc
//
LOCUS       XM_032645478            1426 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor superfamily member 4
            (TNFRSF4), transcript variant X2, mRNA.
ACCESSION   XM_032645478
VERSION     XM_032645478.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1426
                     /gene="TNFRSF4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760523"
     CDS             404..1240
                     /gene="TNFRSF4"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 4 isoform X2"
                     /protein_id="XP_032501369.1"
                     /db_xref="GeneID:116760523"
                     /translation="MRVGAQPPRAPGSAFLLLGLALGAAARLRCVGDTYPSGSRCCKE
                     CQPGYGMESRCTRARDTVCRPCEPGFYNEAVNYEACKPCTQCNQRSGSEPKQRCTPTR
                     DTVCGCRPGTQPQDGYGYKRGVDCAPCPPGHFSPGNDQACQPWTNCTSLGKRTLQAAS
                     NSSDAVCEDRSPRLTPAWETQGPAARSTPAQPTTTWPRASQGPSTPHAEPPKGPELAA
                     VLGLGLGLGLLGPVAAALALLLHHRAWRPTPNAPKPPGANSFRTPIQEEHADANSSLA
                     KI"
     misc_feature    491..916
                     /gene="TNFRSF4"
                     /note="Tumor necrosis factor receptor superfamily member 4
                     (TNFRSF4), also known as CD134 or OXO40; Region: TNFRSF4;
                     cd13406"
                     /db_xref="CDD:276911"
     misc_feature    491..592
                     /gene="TNFRSF4"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276911"
     misc_feature    order(497..511,533..535,563..565,632..637,644..646)
                     /gene="TNFRSF4"
                     /note="polypeptide ligand binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276911"
     misc_feature    599..721
                     /gene="TNFRSF4"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276911"
     misc_feature    725..904
                     /gene="TNFRSF4"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276911"
ORIGIN      
        1 atgcctggcc gaaggggctc cagtttcctg tgagacagga gtgggagggg tccaggggga
       61 ggggtcggtg cagaccggct gggctggagg acctgggctg gtggccctgg caggggtcag
      121 ggggctgcgg gtcctcactc aggccctgga tctgcacact gcagctgctg gctgggccaa
      181 gcctgaggcc tacggccgtt atcgcagggt tgggggcctt ggcgcccagg gcagaagaga
      241 agcccagggc cgggacacag gctgccttcc agtgcttcct ggggcctcct tcctcctggt
      301 cccctcctcc tgccctcccc acccctcccc cgcagccctt atagccacat cctgcaagga
      361 aaaaccccag actcccgagc tgtggggctg agagcagccg agaatgcgcg tgggagccca
      421 gccacccagg gcgccgggct cggccttcct gctcctgggg ctcgcgctgg gcgctgcggc
      481 ccggctcaga tgtgttgggg acacctaccc cagtggcagc aggtgctgta aggagtgcca
      541 gccaggttat gggatggaga gccgctgcac ccgcgcccgg gacacggtgt gccgtccgtg
      601 tgagcccggc ttctacaacg aggcggtcaa ctacgaggcc tgcaagccct gcacacagtg
      661 caaccagaga agtgggagcg agcccaagca gagatgcaca cccacgagag acacggtctg
      721 cggctgcagg ccgggcaccc agccccagga cggctatggc tacaagcgtg gagttgactg
      781 tgccccgtgc ccaccaggac acttctcccc gggcaacgac caggcctgcc agccctggac
      841 caactgcacc tcattaggaa agcgaacact gcaggcggcc agcaacagct cggacgctgt
      901 ctgtgaggac aggagccccc gactcacacc agcctgggag acccagggcc ccgcagcccg
      961 gtccaccccc gctcagccca ccaccacctg gccgagggcc tcacaggggc cctccacgcc
     1021 ccacgcagag ccccccaagg gccccgagct ggccgctgtc ctgggcctgg gcctgggcct
     1081 gggcctgctc ggccccgtgg ctgccgcgct ggccttgctc ctgcaccaca gggcctggag
     1141 gccgacgccc aacgccccca agccccccgg ggcaaacagc ttccggaccc ccatccaaga
     1201 ggagcatgcc gacgccaact ccagcctggc caagatctga gcaatgtccg ctggcatagg
     1261 agccggtgcc cctccccagg cgggggcccc ccgacgcagg ccgtcccacc ccgtcacccc
     1321 cggaccttgg cgccctgtcc ccccgccctg tgccgtttta ggcgctcctg ggctggcatc
     1381 ctgggccctg ctatgtatgc tgtgcgtact ccccacccag ggtggc
//
LOCUS       XM_032645493            3027 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 6 member 17
            (SLC6A17), transcript variant X1, mRNA.
ACCESSION   XM_032645493
VERSION     XM_032645493.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3027
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3027
                     /gene="SLC6A17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 20 Proteins, and 55%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760533"
     CDS             499..2670
                     /gene="SLC6A17"
                     /codon_start=1
                     /product="sodium-dependent neutral amino acid transporter
                     SLC6A17 isoform X1"
                     /protein_id="XP_032501384.1"
                     /db_xref="GeneID:116760533"
                     /translation="MPKNSKVTQREHSSEHVTESVADLLALEEPVDYKQSILNVAGEA
                     AGKQKVADVEDRPAWNSKLQYILAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLL
                     IIIGIPLFFLELAVGQRIRRGSIGVWHYVCPRLGGIGFSSCIVCLFVGLYYNVIIGWS
                     IFYFFKSFQYPLPWSECPVARNGTAAVVEPECEKSSATTYFWYREALDISNSISESGG
                     LNWKMTLCLLVAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLLLRGAVDG
                     ILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSF
                     INFFTSVLATLVVFAVLGFKANIMNEKCVVENAEKILGYLNTDVLSRALIPPHVNFSH
                     LTTKDYAEMYKVIKTVKEDHFSALGLDPCLLEDELDKSVQGTGLAFIAFTEAMTHFPA
                     SPFWSVMFFLMLINLGLGSMIGTMAGITTPIIDTFKVPKEMFTVGCCVFAFFVGLLFV
                     QRSGNYFVTMFDDYSATLPLTVIVILENVAVAWIYGTKKFMQELTEMLGFQPYRFYFY
                     MWKFVSPLCMAVLTTASIIQLGVTPPGYSAWIKEEAAERYLYFPNWAMALLITLIVVA
                     VLPIPVVFVLRHFHLLSDGSNTLSVSYKKGRMMKDISNLEENDETRFILSKVPSEAPS
                     PMPTHRSYLGPGSTSPLETSGNPNGRYGSGYLLASTPESEL"
     misc_feature    664..2430
                     /gene="SLC6A17"
                     /note="Na(+)-dependent neurotransmitter transporter 4;
                     solute-binding domain; Region: SLC6sbd_NTT4; cd11521"
                     /db_xref="CDD:271403"
     misc_feature    order(709..711,718..720,1891..1893,1900..1905)
                     /gene="SLC6A17"
                     /note="Na binding site 2 [ion binding]; other site"
                     /db_xref="CDD:271403"
     misc_feature    order(712..717,721..732,955..957,1405..1410,1423..1425,
                     1429..1431,1903..1905,1912..1917)
                     /gene="SLC6A17"
                     /note="putative substrate binding site 1 [chemical
                     binding]; other site"
                     /db_xref="CDD:271403"
     misc_feature    order(715..717,730..732,1408..1410,1504..1506)
                     /gene="SLC6A17"
                     /note="Na binding site 1 [ion binding]; other site"
                     /db_xref="CDD:271403"
     misc_feature    order(736..741,952..954,964..966,973..975,1798..1800,
                     1810..1812)
                     /gene="SLC6A17"
                     /note="putative substrate binding site 2 [chemical
                     binding]; other site"
                     /db_xref="CDD:271403"
ORIGIN      
        1 ctttcgcaaa acgaggggaa cagtgcgcgc tgcgctccgc cccgctccgt tccgctccgc
       61 agagccggcg cggccagggc gcagggaggg tggccctcgg ccccggtgcc tgcagcctca
      121 cgcgctgcct ccgccgcggg acctgggttc ccggaccgct cccccgaggc ccgagcgcgc
      181 cgcgggcggg agacgggcag ggacaagcgg cgaggagagg gagagaggag cgagcggagt
      241 ctcctgcgcc ggcgcgcggc cccgggtccc ctcccagccc tggccggggc ccgtcgccgc
      301 cacagtcgga ctgcccgtcg tgggagggac tgtgcgcccg cgacccgtcg ggaaccgcag
      361 ctgctcggtc ggagtgcagc ggccgagacc gcgcgacggc cacgcgggac aggtccctgg
      421 atgagaagga gctgacagcg gccgagtccc accttctctg cgtgctgggg agcagggctg
      481 cgtcgcccag gtggcccaat gccgaagaac agcaaggtga cccagcgcga gcacagtagt
      541 gagcatgtca cggagtcggt ggccgacctg ctggcccttg aggagcctgt ggactataaa
      601 cagagcatcc tgaatgtggc cggagaagca gccggcaagc agaaggtggc ggatgtggag
      661 gaccggccgg cctggaacag caagctgcag tacatcttgg cccagatcgg cttctctgtg
      721 ggccttggca acatctggag gttcccctac ctgtgccaga aaaatggagg aggtgcctac
      781 ctggtgccct acctggtgct gctgatcatc attgggatcc cgctcttctt cctggagctg
      841 gctgtgggcc agaggatccg ccgcggcagc atcggcgtgt ggcactatgt gtgtccccgc
      901 ctgggcggca tcggcttctc cagctgcata gtctgcctct tcgttgggct gtactataat
      961 gtgatcatcg ggtggagcat cttctatttc ttcaagtctt tccagtaccc gctgccctgg
     1021 agtgagtgcc ctgtcgccag gaatgggacc gcggcagtgg tggagccaga gtgtgagaag
     1081 agctcggcca ctacctactt ctggtaccga gaggcattgg acatctccaa ctccatctca
     1141 gagagcgggg gcctcaactg gaagatgacc ctgtgcctcc tcgtggcctg gagcatcgtg
     1201 ggcatggccg tcgtcaaggg catccagtcc tcggggaagg tgatgtattt cagctccctc
     1261 tttccctacg tggtgctggc ctgcttcctg gtccgggggc tgctgctgcg gggggccgtc
     1321 gatggcatcc tgcacatgtt cactcccaag ctggacaaga tgctggaccc ccaggtgtgg
     1381 cgggaggcag ccacacaggt cttcttcgcc ctggggctag gctttggggg tgtcatcgcc
     1441 ttctccagct acaacaaaca ggacaacaac tgccacttcg acgccgccct ggtgtccttc
     1501 atcaacttct tcacctcggt gctggccacc ctcgtggtgt tcgctgtgct gggcttcaag
     1561 gccaacatca tgaacgagaa gtgtgtggtc gagaatgccg agaagatcct ggggtacctc
     1621 aacaccgacg tcctgagccg ggccctcatc cctcctcacg tcaacttctc tcacctgacc
     1681 actaaggact acgcggagat gtacaaggtc atcaagaccg tgaaggagga ccatttctca
     1741 gccctgggcc tcgatccctg ccttctggag gatgagctgg acaagtccgt gcagggcaca
     1801 ggcctggcct tcatcgcctt caccgaggcc atgacgcact tccccgcctc cccgttctgg
     1861 tccgtcatgt tcttcctgat gcttatcaac ctgggcctgg gcagtatgat cgggaccatg
     1921 gcaggcatca ccacgcccat catcgacacc ttcaaggtgc ccaaggagat gttcacagtg
     1981 ggctgctgtg tctttgcctt cttcgtgggg ctgttgttcg tccagcgctc cggaaactac
     2041 tttgtcacca tgtttgatga ctactcggcc accctgccgc tcaccgtcat cgtcatcctt
     2101 gagaacgtcg ctgtggcctg gatctatgga accaagaagt tcatgcagga gctgacggag
     2161 atgctgggct tccagcccta ccgcttctat ttctacatgt ggaagttcgt gtctccactg
     2221 tgcatggctg tgctcaccac ggccagcatc atccaactgg gggtcacgcc cccgggctac
     2281 agcgcctgga tcaaggagga ggctgccgag cgctacctgt atttccctaa ctgggccatg
     2341 gctctcctga tcacgctcat cgtcgtggct gtcctgccca tccctgtggt gttcgttctg
     2401 cggcacttcc acctgctctc cgacggctcc aacaccctct ccgtgtccta caagaagggc
     2461 cgcatgatga aggacatctc caacctggag gagaacgacg agacccgctt catcctcagc
     2521 aaggtgccca gcgaggcgcc ctcccccatg cccactcacc gctcctacct ggggcccggc
     2581 agcacatcgc ccctggagac cagtggcaac cccaatggac gctatgggag tggctacctc
     2641 ctggccagca cccctgagtc ggagctgtga ccaccgcccc gccctgcccg cctcgcctcc
     2701 catacccagc cagcccacgt gtcccagcct ggcttttcct tccaggccag gccctctgcc
     2761 caaggggagg ggctctgccc tgcctcatcc tccaccccag tcccagctga cttctgcttc
     2821 ctagatctga gtgggggctg ggagaagctc tgtcccccag tctaggcccc caacccagct
     2881 aaccttcaga gatcccctta ccaaactaca gctgagttac tggaaacgcc cagacgtccc
     2941 gattcccagc acaggggaga ctccaagtgg ccactccggg ggtcactcca cactccctct
     3001 ctcctgcagt tcttaggtct cggagtc
//
LOCUS       XM_032645501            2163 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 6 member 17
            (SLC6A17), transcript variant X2, mRNA.
ACCESSION   XM_032645501
VERSION     XM_032645501.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2163
                     /gene="SLC6A17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 56% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760533"
     CDS             1..2163
                     /gene="SLC6A17"
                     /codon_start=1
                     /product="sodium-dependent neutral amino acid transporter
                     SLC6A17 isoform X2"
                     /protein_id="XP_032501392.1"
                     /db_xref="GeneID:116760533"
                     /translation="MPKNSKVTQREHSSEHVTESVADLLALEEPVDYKQSILNVAGEA
                     AGKQKVADVEDRPAWNSKLQYILAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLL
                     IIIGIPLFFLELAVGQRIRRGSIGVWHYVCPRLGGIGFSSCIVCLFVGLYYNVIIGWS
                     IFYFFKSFQYPLPWSECPVARNGTAAVVEPECEKSSATTYFWYREALDISNSISESGG
                     LNWKMTLCLLVAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLLLRGAVDG
                     ILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSF
                     INFFTSVLATLVVFAVLGFKANIMNEKCVVENAEKILGYLNTDVLSRALIPPHVNFSH
                     LTTKDYAEMYKVIKTVKEDHFSALGLDPCLLEDELDKGTGLAFIAFTEAMTHFPASPF
                     WSVMFFLMLINLGLGSMIGTMAGITTPIIDTFKVPKEMFTVGCCVFAFFVGLLFVQRS
                     GNYFVTMFDDYSATLPLTVIVILENVAVAWIYGTKKFMQELTEMLGFQPYRFYFYMWK
                     FVSPLCMAVLTTASIIQLGVTPPGYSAWIKEEAAERYLYFPNWAMALLITLIVVAVLP
                     IPVVFVLRHFHLLSDGSNTLSVSYKKGRMMKDISNLEENDETRFILSKVPSEAPSPMP
                     THRSYLGPGSTSPLETSGNPNGRYGSGYLLASTPESEL"
     misc_feature    166..1923
                     /gene="SLC6A17"
                     /note="Na(+)-dependent neurotransmitter transporter 4;
                     solute-binding domain; Region: SLC6sbd_NTT4; cd11521"
                     /db_xref="CDD:271403"
     misc_feature    order(211..213,220..222,1384..1386,1393..1398)
                     /gene="SLC6A17"
                     /note="Na binding site 2 [ion binding]; other site"
                     /db_xref="CDD:271403"
     misc_feature    order(214..219,223..234,457..459,907..912,925..927,
                     931..933,1396..1398,1405..1410)
                     /gene="SLC6A17"
                     /note="putative substrate binding site 1 [chemical
                     binding]; other site"
                     /db_xref="CDD:271403"
     misc_feature    order(217..219,232..234,910..912,1006..1008)
                     /gene="SLC6A17"
                     /note="Na binding site 1 [ion binding]; other site"
                     /db_xref="CDD:271403"
     misc_feature    order(238..243,454..456,466..468,475..477,1291..1293,
                     1303..1305)
                     /gene="SLC6A17"
                     /note="putative substrate binding site 2 [chemical
                     binding]; other site"
                     /db_xref="CDD:271403"
ORIGIN      
        1 atgccgaaga acagcaaggt gacccagcgc gagcacagta gtgagcatgt cacggagtcg
       61 gtggccgacc tgctggccct tgaggagcct gtggactata aacagagcat cctgaatgtg
      121 gccggagaag cagccggcaa gcagaaggtg gcggatgtgg aggaccggcc ggcctggaac
      181 agcaagctgc agtacatctt ggcccagatc ggcttctctg tgggccttgg caacatctgg
      241 aggttcccct acctgtgcca gaaaaatgga ggaggtgcct acctggtgcc ctacctggtg
      301 ctgctgatca tcattgggat cccgctcttc ttcctggagc tggctgtggg ccagaggatc
      361 cgccgcggca gcatcggcgt gtggcactat gtgtgtcccc gcctgggcgg catcggcttc
      421 tccagctgca tagtctgcct cttcgttggg ctgtactata atgtgatcat cgggtggagc
      481 atcttctatt tcttcaagtc tttccagtac ccgctgccct ggagtgagtg ccctgtcgcc
      541 aggaatggga ccgcggcagt ggtggagcca gagtgtgaga agagctcggc cactacctac
      601 ttctggtacc gagaggcatt ggacatctcc aactccatct cagagagcgg gggcctcaac
      661 tggaagatga ccctgtgcct cctcgtggcc tggagcatcg tgggcatggc cgtcgtcaag
      721 ggcatccagt cctcggggaa ggtgatgtat ttcagctccc tctttcccta cgtggtgctg
      781 gcctgcttcc tggtccgggg gctgctgctg cggggggccg tcgatggcat cctgcacatg
      841 ttcactccca agctggacaa gatgctggac ccccaggtgt ggcgggaggc agccacacag
      901 gtcttcttcg ccctggggct aggctttggg ggtgtcatcg ccttctccag ctacaacaaa
      961 caggacaaca actgccactt cgacgccgcc ctggtgtcct tcatcaactt cttcacctcg
     1021 gtgctggcca ccctcgtggt gttcgctgtg ctgggcttca aggccaacat catgaacgag
     1081 aagtgtgtgg tcgagaatgc cgagaagatc ctggggtacc tcaacaccga cgtcctgagc
     1141 cgggccctca tccctcctca cgtcaacttc tctcacctga ccactaagga ctacgcggag
     1201 atgtacaagg tcatcaagac cgtgaaggag gaccatttct cagccctggg cctcgatccc
     1261 tgccttctgg aggatgagct ggacaagggc acaggcctgg ccttcatcgc cttcaccgag
     1321 gccatgacgc acttccccgc ctccccgttc tggtccgtca tgttcttcct gatgcttatc
     1381 aacctgggcc tgggcagtat gatcgggacc atggcaggca tcaccacgcc catcatcgac
     1441 accttcaagg tgcccaagga gatgttcaca gtgggctgct gtgtctttgc cttcttcgtg
     1501 gggctgttgt tcgtccagcg ctccggaaac tactttgtca ccatgtttga tgactactcg
     1561 gccaccctgc cgctcaccgt catcgtcatc cttgagaacg tcgctgtggc ctggatctat
     1621 ggaaccaaga agttcatgca ggagctgacg gagatgctgg gcttccagcc ctaccgcttc
     1681 tatttctaca tgtggaagtt cgtgtctcca ctgtgcatgg ctgtgctcac cacggccagc
     1741 atcatccaac tgggggtcac gcccccgggc tacagcgcct ggatcaagga ggaggctgcc
     1801 gagcgctacc tgtatttccc taactgggcc atggctctcc tgatcacgct catcgtcgtg
     1861 gctgtcctgc ccatccctgt ggtgttcgtt ctgcggcact tccacctgct ctccgacggc
     1921 tccaacaccc tctccgtgtc ctacaagaag ggccgcatga tgaaggacat ctccaacctg
     1981 gaggagaacg acgagacccg cttcatcctc agcaaggtgc ccagcgaggc gccctccccc
     2041 atgcccactc accgctccta cctggggccc ggcagcacat cgcccctgga gaccagtggc
     2101 aaccccaatg gacgctatgg gagtggctac ctcctggcca gcacccctga gtcggagctg
     2161 tga
//
LOCUS       XM_032645514            2847 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 11 (RNF11), mRNA.
ACCESSION   XM_032645514
VERSION     XM_032645514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2847
                     /gene="RNF11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760544"
     CDS             497..961
                     /gene="RNF11"
                     /codon_start=1
                     /product="RING finger protein 11"
                     /protein_id="XP_032501405.1"
                     /db_xref="GeneID:116760544"
                     /translation="MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQV
                     PVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVIC
                     MMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN"
     misc_feature    788..916
                     /gene="RNF11"
                     /note="RING finger, H2 subclass, found in RING finger
                     protein 11 (RNF11) and similar proteins; Region:
                     RING-H2_RNF11; cd16468"
                     /db_xref="CDD:438131"
ORIGIN      
        1 cgcagctggc ctcgttctgg ccgtcgccgc cgctttcagg cggagtagga tgaggcccgc
       61 ggctgcagct ccggcgtcgg cgggggcagc agcagctgag gcagcagctg agggagcctc
      121 gacggccgcg cccccccctc ctgacctgga ttaggcccag cagctccgtg gccgccgccg
      181 ccccgcgggg gggcggggtg gggaagtgct tcgtctcccc gccccccccc cccatcgccg
      241 ccgccgccgc cgccgccgcc tcgtaggagg ctaccgccgc gaccccaggg aacccgcggc
      301 ccagccttaa gcccccaacc ccgggggctg gcatgagcgg ctcttgggcg gcgccggggg
      361 gcgggttagc cgtcgccgcc tgagccccgg cctgccgccc gaccccacct cgctgaccga
      421 ggctgaccgc ggagcgtgcg aacgaccccg ctactgcttt cttcctcccc cagatcacac
      481 accccagccc cggaagatgg ggaactgcct gaagtccccc acttcggatg acatctccct
      541 gcttcacgag tctcagtccg accgggctag ctttggcgag gggacagagc cggatcagga
      601 gccgccgccg ccatatcagg aacaagttcc agttccggtc tatcatccaa cacctagcca
      661 gactcgccta gcaactcagc tgactgaaga ggaacaaatt aggatagctc aaagaatagg
      721 ccttatacag catctgccta aaggagttta tgaccctgga agagatggat cagaaaaaaa
      781 gatccgggag tgtgtgatct gtatgatgga ctttgtttat ggggacccaa ttcgatttct
      841 gccgtgcatg cacatctatc acctggactg tatagatgac tggttgatga gatccttcac
      901 gtgcccctcc tgcatggagc cagttgatgc agcactgctt tcatcctacg agactaattg
      961 agccagggtc tctcatctga cttcaagtga accatcattt ttggtggttt tgatcttttg
     1021 tcactgagcc caaagagcca gggattagga attaagatca tgcacaaaag tttcctaaaa
     1081 attcctgcat ggctgcagat gttggggaaa aaaagtatgt gatattttag aaacttaggg
     1141 ggaaaagtag gaaggtattt ttatgtaaag ccttgaccca gtgttcaaaa atataattgt
     1201 atttagatct tgttattgct ccagtacata ggaattgtgt aaagtgttat acagcagctg
     1261 tatatgttta aattgtgtct gttgaagatt aggaaaaaga tagtggttgt ttttcctaaa
     1321 tgaaataact ttcttcttcc ccccacccaa attcttttct caagttgctg gcatttgggt
     1381 caaggtttta ttaaaagcta cattttataa cactggcaca aaaaaagtag ttttaagctt
     1441 gtttgcacag ttcttttttt ccattggaaa tggaattcat tgccttaggt ctttttaaat
     1501 agtatattat tatcgttggg gctggctcta tgcttgaaaa ccagtttatt tataacctgt
     1561 tataagtgct atatctgttt gcagttagga aatgcagaat tcaaagtgat ctcctagctt
     1621 gtaagcaaac tgagatgcac tatccctttt ctataaaaaa atgagttaat gtgtcaagaa
     1681 accaactcta gtaaagtggg gtttaatatt accctttctt atgtgtttca cctaattatt
     1741 ttggttgtta atatggtgat aattaaaagt caaggtaaat tttaaatatt aagaattctg
     1801 atttattgag cttgaattat gccaccatgc ttatgtaaaa atgaaagtgg caccatggtt
     1861 aaactgagaa aagtttctca gttgcaacaa ttttgattta ttctttcctg tgacctcctt
     1921 ccctgttgtc ttgaacatag caaaaggata ctgcatctct tcttattgta gtgctgaggt
     1981 tactgaagtt atataaaaac acatctctgt ttctgttgga aggacagtcc tgctagttga
     2041 ctgacaatta attctaagca gggagaatta agataaatgt gtttcatgtt ttgcacacaa
     2101 atgcagaatt tgtataacca catgacttca tagttgtgat ctcaaaaaag aaggaatttc
     2161 tcttttatct ttttcttgca gttaatataa gaacactgaa tctctaagct tctgaagtgt
     2221 tagaggtaga gatggtctag taaagatgta gttgtaatgt tttatccatt tagcatgtgt
     2281 ttatttttct ttatgtactc gaaggtgaca tatttgtaca actcagtgat attacagcta
     2341 aaaaatcatt cattagcaaa aggagaagca atctcaaccc aacaaatcag aaatgtttct
     2401 ttttatttta tattgagttg aatatttgac tttaacactt ttctacatac aaaacacaag
     2461 tctcttgaag ggttcttcat aattgcatta tagaagaatt tagtatgtca taagcactta
     2521 aagatttgac attcaactgt agcagtatcc atgttggtta attttcttat gagccccatg
     2581 atgagttcga gaaaaattga aagaaattag attatcaagt tctgttaaat tgttacatgt
     2641 atcttgctta agtttttgtt cattaattta tatccaatta cataaagcaa atttggagga
     2701 aacacctgaa gttgtgcaat attttcagcg gtattacttt ttttatcttt gtgttttcta
     2761 cttaaacatg atgtctgtca tcaagtatta tagtcacttt ccttttttct agattgttaa
     2821 aattggtaaa tgaacttttt ttttttt
//
LOCUS       XM_032645528            1235 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase E (PPIE),
            transcript variant X1, mRNA.
ACCESSION   XM_032645528
VERSION     XM_032645528.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1235
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1235
                     /gene="PPIE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 5 long SRA reads, 46
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760548"
     CDS             49..954
                     /gene="PPIE"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase E isoform
                     X1"
                     /protein_id="XP_032501419.1"
                     /db_xref="GeneID:116760548"
                     /translation="MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE
                     KHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWL
                     KKFSGKTLEENKEEEGSEPPKVETQEGEPAVKKARSNPQVYMDIKIGNKPAGRIQMLL
                     RSDIVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKK
                     FDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITEGLDVLR
                     QIEAQGSKDGKPKQKVIISDCGEYV"
     misc_feature    70..294
                     /gene="PPIE"
                     /note="RNA recognition motif (RRM) found in cyclophilin-33
                     (Cyp33) and similar proteins; Region: RRM_PPIE; cd12347"
                     /db_xref="CDD:409783"
     misc_feature    466..942
                     /gene="PPIE"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; Region:
                     cyclophilin_ABH_like; cd01926"
                     /db_xref="CDD:238907"
     misc_feature    order(616..621,634..636,787..789,793..795,817..819)
                     /gene="PPIE"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 agggggcggg ctgagcgtag gcttccggcg gaagagtgcg ggaggaagat ggctactacc
       61 aagcgagtgc tgtacgtggg tggacttgca gaggaggtgg atgacaaagt tcttcatgct
      121 gcttttatcc cttttggaga catcacagat atccagattc ctctggatta tgaaacagaa
      181 aagcaccgag gatttgcttt tgttgaattt gagttggcag aggatgctgc agcagctatc
      241 gacaacatga atgagtctga gctctttgga cggacaattc gtgtcaattt ggcaaaaccc
      301 atgaggatta aggaaggctc ttccagacca gtttggtccg atgatgactg gttgaagaag
      361 ttttctggga agactcttga ggaaaataaa gaggaagaag ggtcagagcc tccaaaagtg
      421 gaaacccagg agggagagcc cgctgtaaaa aaggcccggt caaaccctca ggtgtacatg
      481 gacatcaaga ttgggaacaa gccagcaggc cgcatccaga tgctcctacg ttcagacatc
      541 gttcccatga cagcagagaa tttccgctgc ctgtgcaccc atgagaaggg ctttggcttc
      601 aagggcagca gcttccaccg catcatcccc cagttcatgt gccagggcgg tgatttcacc
      661 aaccacaatg gcactggggg caagtccatc tacgggaaga agtttgacga tgaaaacttc
      721 atcctcaaac acacgggacc aggcctgctc tccatggcca actctggccc aaacaccaac
      781 ggctcccagt tcttcctgac atgtgacaag acggactggc tggacggcaa gcacgtggta
      841 tttggggaga tcacggaagg cctggacgtc ttgcggcaga ttgaggccca gggcagcaag
      901 gacgggaaac ccaagcagaa ggtcatcatc tccgactgtg gggagtacgt gtgagagggc
      961 agctgtcagc ccggggaacc ggcagccaag gtgtcccgtt tgcagcaagc agggctttgt
     1021 gtcccggcgc ttccttgggg tcagcgtggg gcagctcctc tgcaggcacg gcctgggccg
     1081 cctctggctc ttccccaagt ggggccgtgg gccagggtgc tgccctcccc accgtggacg
     1141 gctgtgcgtg ccctattcag gctagggcct ctcctgggct cacctgtgtg gatcctagac
     1201 gttttcttct ggtaaaataa attctctttt ttgta
//
LOCUS       XM_032645539            1175 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase E (PPIE),
            transcript variant X2, mRNA.
ACCESSION   XM_032645539
VERSION     XM_032645539.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1175
                     /gene="PPIE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 32 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760548"
     CDS             85..894
                     /gene="PPIE"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase E isoform
                     X2"
                     /protein_id="XP_032501430.1"
                     /db_xref="GeneID:116760548"
                     /translation="MTKFFMLLLSLLETSQISRFLWIMKQDAAAAIDNMNESELFGRT
                     IRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKVETQEGEPAVK
                     KARSNPQVYMDIKIGNKPAGRIQMLLRSDIVPMTAENFRCLCTHEKGFGFKGSSFHRI
                     IPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL
                     TCDKTDWLDGKHVVFGEITEGLDVLRQIEAQGSKDGKPKQKVIISDCGEYV"
     misc_feature    <163..234
                     /gene="PPIE"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
     misc_feature    406..882
                     /gene="PPIE"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; Region:
                     cyclophilin_ABH_like; cd01926"
                     /db_xref="CDD:238907"
     misc_feature    order(556..561,574..576,727..729,733..735,757..759)
                     /gene="PPIE"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 gtaggcttcc ggcggaagag tgcgggagga agatggctac taccaagcga gtgctgtacg
       61 tgggtggact tgcagaggag gtggatgaca aagttcttca tgctgctttt atcccttttg
      121 gagacatcac agatatccag attcctctgg attatgaaac aggatgctgc agcagctatc
      181 gacaacatga atgagtctga gctctttgga cggacaattc gtgtcaattt ggcaaaaccc
      241 atgaggatta aggaaggctc ttccagacca gtttggtccg atgatgactg gttgaagaag
      301 ttttctggga agactcttga ggaaaataaa gaggaagaag ggtcagagcc tccaaaagtg
      361 gaaacccagg agggagagcc cgctgtaaaa aaggcccggt caaaccctca ggtgtacatg
      421 gacatcaaga ttgggaacaa gccagcaggc cgcatccaga tgctcctacg ttcagacatc
      481 gttcccatga cagcagagaa tttccgctgc ctgtgcaccc atgagaaggg ctttggcttc
      541 aagggcagca gcttccaccg catcatcccc cagttcatgt gccagggcgg tgatttcacc
      601 aaccacaatg gcactggggg caagtccatc tacgggaaga agtttgacga tgaaaacttc
      661 atcctcaaac acacgggacc aggcctgctc tccatggcca actctggccc aaacaccaac
      721 ggctcccagt tcttcctgac atgtgacaag acggactggc tggacggcaa gcacgtggta
      781 tttggggaga tcacggaagg cctggacgtc ttgcggcaga ttgaggccca gggcagcaag
      841 gacgggaaac ccaagcagaa ggtcatcatc tccgactgtg gggagtacgt gtgagagggc
      901 agctgtcagc ccggggaacc ggcagccaag gtgtcccgtt tgcagcaagc agggctttgt
      961 gtcccggcgc ttccttgggg tcagcgtggg gcagctcctc tgcaggcacg gcctgggccg
     1021 cctctggctc ttccccaagt ggggccgtgg gccagggtgc tgccctcccc accgtggacg
     1081 gctgtgcgtg ccctattcag gctagggcct ctcctgggct cacctgtgtg gatcctagac
     1141 gttttcttct ggtaaaataa attctctttt ttgta
//
LOCUS       XM_032645548            1161 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase E (PPIE),
            transcript variant X3, mRNA.
ACCESSION   XM_032645548
VERSION     XM_032645548.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1161
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1161
                     /gene="PPIE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 32 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760548"
     CDS             71..880
                     /gene="PPIE"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase E isoform
                     X2"
                     /protein_id="XP_032501439.1"
                     /db_xref="GeneID:116760548"
                     /translation="MTKFFMLLLSLLETSQISRFLWIMKQDAAAAIDNMNESELFGRT
                     IRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKVETQEGEPAVK
                     KARSNPQVYMDIKIGNKPAGRIQMLLRSDIVPMTAENFRCLCTHEKGFGFKGSSFHRI
                     IPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL
                     TCDKTDWLDGKHVVFGEITEGLDVLRQIEAQGSKDGKPKQKVIISDCGEYV"
     misc_feature    <149..220
                     /gene="PPIE"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
     misc_feature    392..868
                     /gene="PPIE"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; Region:
                     cyclophilin_ABH_like; cd01926"
                     /db_xref="CDD:238907"
     misc_feature    order(542..547,560..562,713..715,719..721,743..745)
                     /gene="PPIE"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 ttccggcgga agagtgcggg aggaagatgg ctactaccaa gcgagtgctg tggacttgca
       61 gaggaggtgg atgacaaagt tcttcatgct gcttttatcc cttttggaga catcacagat
      121 atccagattc ctctggatta tgaaacagga tgctgcagca gctatcgaca acatgaatga
      181 gtctgagctc tttggacgga caattcgtgt caatttggca aaacccatga ggattaagga
      241 aggctcttcc agaccagttt ggtccgatga tgactggttg aagaagtttt ctgggaagac
      301 tcttgaggaa aataaagagg aagaagggtc agagcctcca aaagtggaaa cccaggaggg
      361 agagcccgct gtaaaaaagg cccggtcaaa ccctcaggtg tacatggaca tcaagattgg
      421 gaacaagcca gcaggccgca tccagatgct cctacgttca gacatcgttc ccatgacagc
      481 agagaatttc cgctgcctgt gcacccatga gaagggcttt ggcttcaagg gcagcagctt
      541 ccaccgcatc atcccccagt tcatgtgcca gggcggtgat ttcaccaacc acaatggcac
      601 tgggggcaag tccatctacg ggaagaagtt tgacgatgaa aacttcatcc tcaaacacac
      661 gggaccaggc ctgctctcca tggccaactc tggcccaaac accaacggct cccagttctt
      721 cctgacatgt gacaagacgg actggctgga cggcaagcac gtggtatttg gggagatcac
      781 ggaaggcctg gacgtcttgc ggcagattga ggcccagggc agcaaggacg ggaaacccaa
      841 gcagaaggtc atcatctccg actgtgggga gtacgtgtga gagggcagct gtcagcccgg
      901 ggaaccggca gccaaggtgt cccgtttgca gcaagcaggg ctttgtgtcc cggcgcttcc
      961 ttggggtcag cgtggggcag ctcctctgca ggcacggcct gggccgcctc tggctcttcc
     1021 ccaagtgggg ccgtgggcca gggtgctgcc ctccccaccg tggacggctg tgcgtgccct
     1081 attcaggcta gggcctctcc tgggctcacc tgtgtggatc ctagacgttt tcttctggta
     1141 aaataaattc tcttttttgt a
//
LOCUS       XM_032645558            1535 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase E (PPIE),
            transcript variant X4, mRNA.
ACCESSION   XM_032645558
VERSION     XM_032645558.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1535
                     /gene="PPIE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 32 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760548"
     CDS             445..1254
                     /gene="PPIE"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase E isoform
                     X2"
                     /protein_id="XP_032501449.1"
                     /db_xref="GeneID:116760548"
                     /translation="MTKFFMLLLSLLETSQISRFLWIMKQDAAAAIDNMNESELFGRT
                     IRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKVETQEGEPAVK
                     KARSNPQVYMDIKIGNKPAGRIQMLLRSDIVPMTAENFRCLCTHEKGFGFKGSSFHRI
                     IPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL
                     TCDKTDWLDGKHVVFGEITEGLDVLRQIEAQGSKDGKPKQKVIISDCGEYV"
     misc_feature    <523..594
                     /gene="PPIE"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
     misc_feature    766..1242
                     /gene="PPIE"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; Region:
                     cyclophilin_ABH_like; cd01926"
                     /db_xref="CDD:238907"
     misc_feature    order(916..921,934..936,1087..1089,1093..1095,1117..1119)
                     /gene="PPIE"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 gggcggcgag cagctgtcta ggccgtatct ttggcagttt tgcttggcct cagggtgtga
       61 gcctgagacg taacgatctt tgcagctctt ccaagtccgc caggctctga caggaatctc
      121 ttcacctcct gggcctgggg cagtggtgga ggaatattag ggaactctga atcctcgcgc
      181 ccattcactt tatgttcaca gcagtgaggg ctcagccccc gctgttgccc taagcaaaag
      241 agttcccaga ctagccggct aaaaatggga ataaccttag tagcacagtt tgatgagcgc
      301 tttggtgggg acggacattg gtgatatggg cctgggtgcg gggagaagtg acccctccat
      361 ctggagaggt gagagcaagc tctgaggatg cggtgacgcc gcagatgagc cggagttagc
      421 caggtggact tgcagaggag gtggatgaca aagttcttca tgctgctttt atcccttttg
      481 gagacatcac agatatccag attcctctgg attatgaaac aggatgctgc agcagctatc
      541 gacaacatga atgagtctga gctctttgga cggacaattc gtgtcaattt ggcaaaaccc
      601 atgaggatta aggaaggctc ttccagacca gtttggtccg atgatgactg gttgaagaag
      661 ttttctggga agactcttga ggaaaataaa gaggaagaag ggtcagagcc tccaaaagtg
      721 gaaacccagg agggagagcc cgctgtaaaa aaggcccggt caaaccctca ggtgtacatg
      781 gacatcaaga ttgggaacaa gccagcaggc cgcatccaga tgctcctacg ttcagacatc
      841 gttcccatga cagcagagaa tttccgctgc ctgtgcaccc atgagaaggg ctttggcttc
      901 aagggcagca gcttccaccg catcatcccc cagttcatgt gccagggcgg tgatttcacc
      961 aaccacaatg gcactggggg caagtccatc tacgggaaga agtttgacga tgaaaacttc
     1021 atcctcaaac acacgggacc aggcctgctc tccatggcca actctggccc aaacaccaac
     1081 ggctcccagt tcttcctgac atgtgacaag acggactggc tggacggcaa gcacgtggta
     1141 tttggggaga tcacggaagg cctggacgtc ttgcggcaga ttgaggccca gggcagcaag
     1201 gacgggaaac ccaagcagaa ggtcatcatc tccgactgtg gggagtacgt gtgagagggc
     1261 agctgtcagc ccggggaacc ggcagccaag gtgtcccgtt tgcagcaagc agggctttgt
     1321 gtcccggcgc ttccttgggg tcagcgtggg gcagctcctc tgcaggcacg gcctgggccg
     1381 cctctggctc ttccccaagt ggggccgtgg gccagggtgc tgccctcccc accgtggacg
     1441 gctgtgcgtg ccctattcag gctagggcct ctcctgggct cacctgtgtg gatcctagac
     1501 gttttcttct ggtaaaataa attctctttt ttgta
//
LOCUS       XM_032645566            1309 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase E (PPIE),
            transcript variant X5, mRNA.
ACCESSION   XM_032645566
VERSION     XM_032645566.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1309
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1309
                     /gene="PPIE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 32 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760548"
     CDS             285..1028
                     /gene="PPIE"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase E isoform
                     X3"
                     /protein_id="XP_032501457.1"
                     /db_xref="GeneID:116760548"
                     /translation="MSLLNLQSYKVAWNESELFGRTIRVNLAKPMRIKEGSSRPVWSD
                     DDWLKKFSGKTLEENKEEEGSEPPKVETQEGEPAVKKARSNPQVYMDIKIGNKPAGRI
                     QMLLRSDIVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSI
                     YGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITEGL
                     DVLRQIEAQGSKDGKPKQKVIISDCGEYV"
     misc_feature    <324..368
                     /gene="PPIE"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
     misc_feature    540..1016
                     /gene="PPIE"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; Region:
                     cyclophilin_ABH_like; cd01926"
                     /db_xref="CDD:238907"
     misc_feature    order(690..695,708..710,861..863,867..869,891..893)
                     /gene="PPIE"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 agagtgcggg aggaagatgg ctactaccaa gcgagtgctg tacgtgggtg gacttgcaga
       61 ggaggtggat gacaaagttc ttcatgctgc ttttatccct tttggagaca tcacagatat
      121 ccagattcct ctggattatg aaacagaaaa gcaccgagga tttgcttttg ttgaatttga
      181 gttggcagag gatgctgcag cagctatcga caacatggta tggctaggaa tcctccttct
      241 tacagaagtt gctttttggt ggtacagagg gcacttattc atacatgagt ttgctgaacc
      301 tccaaagtta caaggttgca tggaatgagt ctgagctctt tggacggaca attcgtgtca
      361 atttggcaaa acccatgagg attaaggaag gctcttccag accagtttgg tccgatgatg
      421 actggttgaa gaagttttct gggaagactc ttgaggaaaa taaagaggaa gaagggtcag
      481 agcctccaaa agtggaaacc caggagggag agcccgctgt aaaaaaggcc cggtcaaacc
      541 ctcaggtgta catggacatc aagattggga acaagccagc aggccgcatc cagatgctcc
      601 tacgttcaga catcgttccc atgacagcag agaatttccg ctgcctgtgc acccatgaga
      661 agggctttgg cttcaagggc agcagcttcc accgcatcat cccccagttc atgtgccagg
      721 gcggtgattt caccaaccac aatggcactg ggggcaagtc catctacggg aagaagtttg
      781 acgatgaaaa cttcatcctc aaacacacgg gaccaggcct gctctccatg gccaactctg
      841 gcccaaacac caacggctcc cagttcttcc tgacatgtga caagacggac tggctggacg
      901 gcaagcacgt ggtatttggg gagatcacgg aaggcctgga cgtcttgcgg cagattgagg
      961 cccagggcag caaggacggg aaacccaagc agaaggtcat catctccgac tgtggggagt
     1021 acgtgtgaga gggcagctgt cagcccgggg aaccggcagc caaggtgtcc cgtttgcagc
     1081 aagcagggct ttgtgtcccg gcgcttcctt ggggtcagcg tggggcagct cctctgcagg
     1141 cacggcctgg gccgcctctg gctcttcccc aagtggggcc gtgggccagg gtgctgccct
     1201 ccccaccgtg gacggctgtg cgtgccctat tcaggctagg gcctctcctg ggctcacctg
     1261 tgtggatcct agacgttttc ttctggtaaa ataaattctc ttttttgta
//
LOCUS       XM_032645574            1634 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase E (PPIE),
            transcript variant X6, mRNA.
ACCESSION   XM_032645574
VERSION     XM_032645574.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1634
                     /gene="PPIE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 32 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760548"
     CDS             646..1353
                     /gene="PPIE"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase E isoform
                     X4"
                     /protein_id="XP_032501465.1"
                     /db_xref="GeneID:116760548"
                     /translation="MNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
                     EENKEEEGSEPPKVETQEGEPAVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDIVPMT
                     AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFIL
                     KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITEGLDVLRQIEAQGSK
                     DGKPKQKVIISDCGEYV"
     misc_feature    <646..693
                     /gene="PPIE"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
     misc_feature    865..1341
                     /gene="PPIE"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; Region:
                     cyclophilin_ABH_like; cd01926"
                     /db_xref="CDD:238907"
     misc_feature    order(1015..1020,1033..1035,1186..1188,1192..1194,
                     1216..1218)
                     /gene="PPIE"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 ggagtctggg cgaaccgggc cgtggtgtgg agctggacag gtttccgggc gcggagggcg
       61 gcgagcagct gtctaggccg tatctttggc agttttgctt ggcctcaggg tgtgagcctg
      121 agacgtaacg atctttgcag ctcttccaag tccgccaggc tctgacagga atctcttcac
      181 ctcctgggcc tggggcagtg gtggaggaat attagggaac tctgaatcct cgcgcccatt
      241 cactttatgt tcacagcagt gagggctcag cccccgctgt tgccctaagc aaaagagttc
      301 ccagactagc cggctaaaaa tgggaataac cttagtagca cagtttgatg agcgctttgg
      361 tggggacgga cattggtgat atgggcctgg gtgcggggag aagtgacccc tccatctgga
      421 gaggtgagag caagctctga ggatgcggtg acgccgcaga tgagccggag ttagccaggt
      481 ggacttgcag aggaggtgga tgacaaagtt cttcatgctg cttttatccc ttttggagac
      541 atcacagata tccagattcc tctggattat gaaacagaaa agcaccgagg atttgctttt
      601 gttgaatttg agttggcaga ggatgctgca gcagctatcg acaacatgaa tgagtctgag
      661 ctctttggac ggacaattcg tgtcaatttg gcaaaaccca tgaggattaa ggaaggctct
      721 tccagaccag tttggtccga tgatgactgg ttgaagaagt tttctgggaa gactcttgag
      781 gaaaataaag aggaagaagg gtcagagcct ccaaaagtgg aaacccagga gggagagccc
      841 gctgtaaaaa aggcccggtc aaaccctcag gtgtacatgg acatcaagat tgggaacaag
      901 ccagcaggcc gcatccagat gctcctacgt tcagacatcg ttcccatgac agcagagaat
      961 ttccgctgcc tgtgcaccca tgagaagggc tttggcttca agggcagcag cttccaccgc
     1021 atcatccccc agttcatgtg ccagggcggt gatttcacca accacaatgg cactgggggc
     1081 aagtccatct acgggaagaa gtttgacgat gaaaacttca tcctcaaaca cacgggacca
     1141 ggcctgctct ccatggccaa ctctggccca aacaccaacg gctcccagtt cttcctgaca
     1201 tgtgacaaga cggactggct ggacggcaag cacgtggtat ttggggagat cacggaaggc
     1261 ctggacgtct tgcggcagat tgaggcccag ggcagcaagg acgggaaacc caagcagaag
     1321 gtcatcatct ccgactgtgg ggagtacgtg tgagagggca gctgtcagcc cggggaaccg
     1381 gcagccaagg tgtcccgttt gcagcaagca gggctttgtg tcccggcgct tccttggggt
     1441 cagcgtgggg cagctcctct gcaggcacgg cctgggccgc ctctggctct tccccaagtg
     1501 gggccgtggg ccagggtgct gccctcccca ccgtggacgg ctgtgcgtgc cctattcagg
     1561 ctagggcctc tcctgggctc acctgtgtgg atcctagacg ttttcttctg gtaaaataaa
     1621 ttctcttttt tgta
//
LOCUS       XM_032645585            1212 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus bone morphogenetic protein 8B
            (LOC116760568), mRNA.
ACCESSION   XM_032645585
VERSION     XM_032645585.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1212
                     /gene="LOC116760568"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 Proteins, and 70% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760568"
     CDS             1..1212
                     /gene="LOC116760568"
                     /codon_start=1
                     /product="bone morphogenetic protein 8B"
                     /protein_id="XP_032501476.1"
                     /db_xref="GeneID:116760568"
                     /translation="MAARPGPLWLLGLALCALSGGGASGPRPSPGCPQRRLGPRERRY
                     LQREILAVLGLPGRPRPRAPPAAARLPASAPLFMLDMYRAMAGDDDEDGGTPERRLGR
                     ADLVMSFVNMVERDRTLGHQEPQWKEFRFDLTQIPAGEAVTAAELRIYKLPSTHLLNW
                     TLHVSMFEVVLEKSNRESDLFFLDLQTLRSGDEGWLVLDVTAASDRWLLNRNKDLGLR
                     LYVETDDGRSVDPGLAGLLGQQAPRSKQPFVVTFFRASPGPVRAPRAVRPLKRRLPKR
                     TNELPPPNKLPGIFDDVHGSHGRQVCRRHELYVSFQDLGWLDWVIAPQGYSAYYCEGE
                     CSFPLDSCMNATNHAILQSLVHLMKPDAVPKACCAPTKLSATSVLYYDSSNNVILRKH
                     RNMVVRACGCH"
     misc_feature    100..756
                     /gene="LOC116760568"
                     /note="TGF-beta propeptide; Region: TGFb_propeptide;
                     pfam00688"
                     /db_xref="CDD:459906"
     misc_feature    895..1209
                     /gene="LOC116760568"
                     /note="transforming growth factor beta (TGF-beta) like
                     domain found in bone morphogenetic protein 8A (BMP-8A), 8B
                     (BMP-8B) and similar proteins; Region: TGF_beta_BMP8;
                     cd19398"
                     /db_xref="CDD:381668"
     misc_feature    order(919..921,925..927,937..942,946..948,976..978,
                     982..990,994..996,1039..1044,1051..1056,1060..1062,
                     1072..1074,1090..1092,1099..1110,1117..1119,1177..1185,
                     1189..1191,1207..1209)
                     /gene="LOC116760568"
                     /note="putative homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381668"
ORIGIN      
        1 atggccgcgc gccccgggcc gctctggctg ctgggtctgg cgttgtgcgc gctgagcggc
       61 ggcggcgcct ccggcccgcg cccgtcgccc ggctgcccgc aacggcgcct gggcccgcgc
      121 gagcgccgct acctgcagcg cgagatcctg gcggtgctcg ggctgcccgg gcggccccgg
      181 ccccgcgcgc cgcccgccgc cgcccggctg cccgcgtccg cgccgctctt catgctggac
      241 atgtatcgcg ccatggccgg cgacgacgac gaggacggcg ggacccccga gcggcgtctg
      301 ggccgcgccg acctggtcat gagcttcgtc aacatggtgg agcgggaccg caccctgggc
      361 caccaggagc cccagtggaa ggagttccgc tttgacctga cccagatccc ggcgggggag
      421 gccgtcacgg ccgcggagct ccggatttac aagctgccca gtacccacct gctcaactgg
      481 accctccacg tcagcatgtt cgaggtggtc ctggagaagt ccaacaggga gtctgacttg
      541 ttctttttgg atcttcagac gctccgatct ggggacgagg gctggctggt gttggacgtg
      601 acagcagcca gtgaccgctg gctcttgaac cgtaacaagg acctgggact ccgcctctat
      661 gtggaaacag atgatgggcg cagcgtggat cctggcctgg ccggtctgct ggggcaacag
      721 gcaccgcgct ccaaacagcc tttcgtggtc acctttttca gggcgagccc cggccccgtc
      781 cgagcccctc gggcggtgag gcccctgaag aggaggctgc cgaaaagaac caacgagctg
      841 ccgcccccaa acaaactgcc ggggatcttc gacgacgtcc acggctccca cggccgacag
      901 gtgtgccgtc ggcatgagct ctatgtcagc ttccaggacc ttggctggct ggactgggtc
      961 atcgcccccc aaggctactc agcctattac tgtgaagggg agtgctcctt cccactggac
     1021 tcctgcatga acgccaccaa ccacgccatc ctgcagtccc tggtgcacct gatgaagcct
     1081 gacgcggtgc ccaaggcgtg ctgcgcgccc accaagctga gcgctacctc cgtgctctac
     1141 tacgacagca gcaacaacgt catcctgcgc aagcaccgca acatggtggt ccgcgcctgc
     1201 ggctgtcact ga
//
LOCUS       XM_032645598            5092 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ral guanine nucleotide dissociation
            stimulator like 1 (RGL1), transcript variant X1, mRNA.
ACCESSION   XM_032645598
VERSION     XM_032645598.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5092
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5092
                     /gene="RGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116760574"
     CDS             427..2838
                     /gene="RGL1"
                     /codon_start=1
                     /product="ral guanine nucleotide dissociation
                     stimulator-like 1 isoform X1"
                     /protein_id="XP_032501489.1"
                     /db_xref="GeneID:116760574"
                     /translation="MEGKPVGEPAHVVSKLKLSTKVESAGHWLVEDHARIWEVLKTEE
                     SSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIR
                     TIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTSPNC
                     EEVGGQNSSESKTVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLDYLKQMMPGSD
                     PERRAQNLLEQFHKQEVETDNGFPSTISFSLEEEEELEGGGSAEFTCFSEDLVAEQLT
                     YMDAQLFKKVVPHHCLGCIWSRRDKKENKHLAPTIRATISQFNTLTKCVVSTILGGKE
                     LKTQQRAKIIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKTWAAVPKDRMLM
                     FEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQG
                     TVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMTPD
                     PKFIQWFQRQQLLTEEESYALSCEIEAAADASATSPKPRKSMVKRLSLLFLGSDIITS
                     STPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEEGSITPMDTPDEAQKKLSESSS
                     SCSSIHSMDTASSGMSSLMNPLSSPPPCNNNPKIHKRSVSVTSITSTVLPPVYNQQNE
                     DTCIIRISIEDNNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDSDPAEGYELVQVISED
                     KELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRH
                     SKITL"
     misc_feature    724..1116
                     /gene="RGL1"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     GTPases; N-terminal motif; Region: RasGEFN; smart00229"
                     /db_xref="CDD:214571"
     misc_feature    order(781..783,943..945,955..960,967..969,976..981,
                     1090..1095,1102..1104)
                     /gene="RGL1"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:100121"
     misc_feature    1213..2022
                     /gene="RGL1"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases. Small GTP-binding proteins of the Ras
                     superfamily function as molecular switches in fundamental
                     events such as signal transduction, cytoskeleton dynamics
                     and intracellular trafficking; Region: RasGEF; cd00155"
                     /db_xref="CDD:238087"
     misc_feature    order(1312..1320,1357..1362,1366..1374,1378..1383,
                     1390..1395,1402..1404,1507..1509,1516..1521,1525..1533,
                     1537..1548,1552..1557,1615..1617,1624..1626,1639..1647,
                     1654..1656,1786..1794,1801..1809,1813..1821,1825..1836,
                     1879..1881,1891..1893,1996..1998,2005..2010)
                     /gene="RGL1"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
     misc_feature    2470..2730
                     /gene="RGL1"
                     /note="Ras-associating (RA) domain found in Ral guanine
                     nucleotide dissociation stimulator-like 1 (RalGDS-like 1)
                     and similar proteins; Region: RA_RGL; cd17210"
                     /db_xref="CDD:340730"
     misc_feature    order(2470..2484,2488..2490,2509..2535,2545..2550,
                     2572..2574,2581..2586,2590..2592)
                     /gene="RGL1"
                     /note="putative RA-Ras interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340730"
ORIGIN      
        1 ttggctgcga tgggcactgg gggcgggagg ccttggcttt gctgcagccg ccgctgtcaa
       61 ggacctgtca tcagggtcct gcgtaaggcc cggctggcac ggacttgcct gtgaggtggg
      121 atggactggt tgccggacca agtcccctgc agttggcagg agtatgaggc ggagtgatgc
      181 acgcccagcc gcccagcatc gttctagttg tcagaggcat cgcttcggac tgtgtgctgc
      241 ccgtggcttc gttcccgagc cgggagcccc tttctcgggg ttggacctac gctgcgcggc
      301 cagcgggagg tccccaagga cggagtcgaa aggtcatatc ttatgtcagt gctgtgtaac
      361 agcatagcgg ctgcacctgc agaactcgaa ttagatccgt aatgcctcct gcctggctct
      421 ttcaagatgg aggggaagcc cgtgggagag cctgctcatg tggtgtctaa actcaaactt
      481 tccaccaagg tagaaagcgc aggacactgg ctggtggaag atcacgctcg gatatgggaa
      541 gttttaaaga cagaggagag ctcgattcag gactggggtg aagaggtaga ggaaggagct
      601 gtgtaccatg tcaccctcaa aagagtccag attcaacagg ctgccaataa aggagcaaga
      661 tggctagggg ttgaaggcga ccagctgcct ccggggcata cagtcagtca gtatgagacg
      721 tgtaagatca ggaccataaa agctggcacg ttggagaagc tcgtggagaa cctgctgaca
      781 gcttttgggg acaatgactt tacctacatc agcatcttcc tgtcaacgta cagaggcttt
      841 gcctccacta aagaagtgct ggagctgctg ctggacaggt atggaaacct gacaagccca
      901 aactgtgaag aagttggagg ccaaaattca tcagagtcta agacggtgat caggaatgca
      961 atcgcctcca tcctgagggc ctggcttgac cagtgcgcag aggacttccg agagccccct
     1021 cacttccctt gcttacagaa actgctggat tatctcaagc agatgatgcc aggctctgac
     1081 ccagagagaa gagcacagaa tcttcttgag cagtttcaca agcaagaagt agaaactgac
     1141 aatgggtttc ccagcaccat ctccttcagc ctggaagagg aagaggaact ggagggtggc
     1201 gggtctgcag agttcacgtg cttctcagaa gatctcgtgg ctgagcagct gacctacatg
     1261 gatgcacaac tattcaagaa agtagtgcct caccactgcc tgggctgcat ttggtctcga
     1321 agggacaaga aggaaaacaa acacttggct cctacgatcc gtgctaccat ctctcagttt
     1381 aataccctca ccaaatgcgt tgtcagcacc attctggggg gcaaagaact caaaactcag
     1441 cagagagcca aaatcatcga gaagtggatt aacattgctc atgaatgtag aatcctgaag
     1501 aatttctcct ccttgagggc catcgtttcg gcactgcagt ccaattccat ctatcggtta
     1561 aaaaagactt gggccgcggt gccaaaggac cgaatgctga tgtttgaaga actttcggac
     1621 atcttctcag accataataa ccacctgacc agccgggagc tactgatgaa ggaaggaacc
     1681 tcaaaatttg caaacctgga cagcagcgtg aaggaaaacc agaagcgcac tcagaggcgg
     1741 cttcagctcc agaaggacat gggtgtgatg cagggaactg tgccctacct gggcaccttc
     1801 ctgactgacc tgaccatgct tgacactgcc cttcaggact acattgaggg tgggctgata
     1861 aactttgaga agagaagaag ggaatttgaa gtgattgccc aaatcaagct cttacagtct
     1921 gcctgcaaca gctattgtat gaccccagac ccaaagttca tccagtggtt ccagaggcag
     1981 cagctcctaa cagaggagga gagctacgcc ctctcctgtg agatcgaagc ggcggccgac
     2041 gccagtgcca cctctcccaa gcctcggaag agcatggtga agaggctcag cctactgttt
     2101 ctggggtcgg acattatcac cagtagcact cccaccaaag aacagcccaa gtccactgcc
     2161 agcgggagct ctggtgagag catggactct gtcagtgtgt catcctgtga gtcaaatcac
     2221 tcagaggcgg aggagggctc catcactccc atggacacac ctgatgaggc tcaaaaaaag
     2281 ctctccgagt cctcttcctc atgttcctcc atccactcta tggacacagc ttcctcaggg
     2341 atgtcgtcct tgatgaaccc cctctcgtcc cctccgccct gcaacaacaa cccgaaaatc
     2401 cacaagcgct ctgtctccgt gacatccatt acctcgacag tgctgccccc cgtttacaac
     2461 caacagaacg aagacacctg cataatccgc atcagcatag aggacaacaa tggcaacatg
     2521 tacaagagca tcatgttgac gagccaggat aaaactcccg ccgtgatcca gagggcgatg
     2581 ttgaagcaca atctggactc ggacccggct gaggggtacg agctggtaca ggtcatctcg
     2641 gaggacaaag aactcgtgat cccagactcg gcaaatgtct tctatgccat gaacagccaa
     2701 gtgaactttg acttcatctt acgcaaaaag aattctgtgg aagagcaagt aaaactgcgt
     2761 agccggacca gcctgacgtt gcccaggaca gccaaacggg gctgctggag caacagacac
     2821 agcaaaatca ccctctgaaa ggagagacca gtggcccctt gcttgccaaa ggcagggtgg
     2881 ggctgagaac aggccgtggt gattgcagct accaccgagt gttagaggat cattggtgag
     2941 gtggacagat atttattgag tacctctggt gtgcaaggca ctatgatagg cgtcgtgggg
     3001 aaatcggaga tgaacttgac acgaaaagga tgattctctt tgacctatct gagaccaaaa
     3061 tgcaaaatta cccacattta taaatatata tgtatgtaca cacatttggt atgtgtgtgt
     3121 atatatataa atatgaggga cttacgggat attctggact atggagaaac aaatttgcac
     3181 aatggcctgg gaagtcgagg tcacttttta cagggaacta gaaggaactg agaacctcgt
     3241 ctcatacctt ccaagtaaac agaatcaacc ctaggaatac agagtgtcct ttgtgccagt
     3301 attataagca gtccaaacta tttttataaa gggagaggat tactttctca atcaagtgcc
     3361 accagaaaag aaccaccgca gaggcgggaa ctgccacagg ctgaatgaaa ggccacctcg
     3421 gaaaggcttt ggatgagcca gtggctttga cctctgcttg catcggccaa tttctgctac
     3481 cccagggagg gctaggagca gctttggagg actgtctgag ccactggtcc agccgttgtg
     3541 acacctctgg aggcaacaca agcccatttt gatttctggc aacttcattg tttgtttccc
     3601 cccccccccc ccccccaaag aacatatcac aatcattctt gcacatccag ccatgttctt
     3661 tggtaactta tcagccagaa aggaaagcac aaaaggatga tgactcatgt ggactctgat
     3721 ctgtcttgga atgccactac ttcattgttt ttttctgatt gccttttgca tgtgaaacta
     3781 catgtctgca gtcttttgcc atctggatcg cagtacctct atattacgtg caatttgttc
     3841 ctcaggtgta gaaattccta ctgcgattga ttataactga tgattttgag cctgtgaacg
     3901 atttctgaac agcgattgct ctgtgattag cccctcggaa gatgttcact gctgagagca
     3961 gtgtcctgtt ttacgtatta acttttatgg ccttcctgtg cctagtcatg gggaaagaaa
     4021 tggggctccg tatattatcc aactcgtttc taaagaggta cattcttcca gatggaatca
     4081 gtaacttttt tttttttttt caggtttcca cacttggtat cacagtatca ctgttaagtg
     4141 acacttttgt ctccagtacc accatcatcc tctcccttcc aaatctgagc tgtggctggg
     4201 gtttgaacta caaagccata cgtgggatat tgacacgttt aagaagcact ttcagaatgt
     4261 tgtccttttt aagaagaaaa ttctcaaaat accagttttt attccaaaaa taaagaatga
     4321 acccagatat gacgtgcaga ttgtaatgtg gagctttttt tttttttcct atcctgtaag
     4381 acagctccca aaggttatgt gtgatttatg ttacataaat tagccatatg aaatctgcaa
     4441 gaaaaacacc agggaaagtc tagagatttg tggcggtgga ccaaagaacg agaatgagcc
     4501 aggaaggcct cagatttcct ttaggtcttt ctagatcaga ccgcattgta aagaccgact
     4561 ggtttcaact agttgaaaag cacttttttt ctgtgtttgc gaggctggtt cgatttgtgc
     4621 ttctgtgcgt ggaggaggga tggccagggt gctagacgtc atggggactg aaggaaacgt
     4681 aggctcagcc tgaatttctt ggttggaagg tcaaaaagaa aatgtagaac tgttggcctg
     4741 gtttagggcg cggctaccaa gacatacgtg ttgtgcccat gtgctcgcct tgtgtattta
     4801 tactgtatat gtagagtcta gatttatata ctgcaatgta aaatatatat atattttttt
     4861 ccttttttaa aaaagacaat ggaagttaca agtagataaa acatagcctc atttatttaa
     4921 tgccacttta aatgtcttaa atttgtttcc tggtggacag ccgggttaat acttttagct
     4981 gctcgcatat gcttgtcttt ctgcatctcc atcatctgtt taccttttgg tcaaattaat
     5041 aaactggctt gggacttggt tggcatgtgc ggccagaccc aaagggattg ta
//
LOCUS       XM_032645607            4736 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ral guanine nucleotide dissociation
            stimulator like 1 (RGL1), transcript variant X2, mRNA.
ACCESSION   XM_032645607
VERSION     XM_032645607.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4736
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4736
                     /gene="RGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 12
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760574"
     CDS             176..2482
                     /gene="RGL1"
                     /codon_start=1
                     /product="ral guanine nucleotide dissociation
                     stimulator-like 1 isoform X2"
                     /protein_id="XP_032501498.1"
                     /db_xref="GeneID:116760574"
                     /translation="MKLLWQAKMSSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARW
                     LGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRG
                     FASTKEVLELLLDRYGNLTSPNCEEVGGQNSSESKTVIRNAIASILRAWLDQCAEDFR
                     EPPHFPCLQKLLDYLKQMMPGSDPERRAQNLLEQFHKQEVETDNGFPSTISFSLEEEE
                     ELEGGGSAEFTCFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSRRDKKENKHLAPTI
                     RATISQFNTLTKCVVSTILGGKELKTQQRAKIIEKWINIAHECRILKNFSSLRAIVSA
                     LQSNSIYRLKKTWAAVPKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSS
                     VKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRR
                     EFEVIAQIKLLQSACNSYCMTPDPKFIQWFQRQQLLTEEESYALSCEIEAAADASATS
                     PKPRKSMVKRLSLLFLGSDIITSSTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEA
                     EEGSITPMDTPDEAQKKLSESSSSCSSIHSMDTASSGMSSLMNPLSSPPPCNNNPKIH
                     KRSVSVTSITSTVLPPVYNQQNEDTCIIRISIEDNNGNMYKSIMLTSQDKTPAVIQRA
                     MLKHNLDSDPAEGYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQV
                     KLRSRTSLTLPRTAKRGCWSNRHSKITL"
     misc_feature    368..760
                     /gene="RGL1"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     GTPases; N-terminal motif; Region: RasGEFN; smart00229"
                     /db_xref="CDD:214571"
     misc_feature    order(425..427,587..589,599..604,611..613,620..625,
                     734..739,746..748)
                     /gene="RGL1"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:100121"
     misc_feature    857..1666
                     /gene="RGL1"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases. Small GTP-binding proteins of the Ras
                     superfamily function as molecular switches in fundamental
                     events such as signal transduction, cytoskeleton dynamics
                     and intracellular trafficking; Region: RasGEF; cd00155"
                     /db_xref="CDD:238087"
     misc_feature    order(956..964,1001..1006,1010..1018,1022..1027,
                     1034..1039,1046..1048,1151..1153,1160..1165,1169..1177,
                     1181..1192,1196..1201,1259..1261,1268..1270,1283..1291,
                     1298..1300,1430..1438,1445..1453,1457..1465,1469..1480,
                     1523..1525,1535..1537,1640..1642,1649..1654)
                     /gene="RGL1"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
     misc_feature    2114..2374
                     /gene="RGL1"
                     /note="Ras-associating (RA) domain found in Ral guanine
                     nucleotide dissociation stimulator-like 1 (RalGDS-like 1)
                     and similar proteins; Region: RA_RGL; cd17210"
                     /db_xref="CDD:340730"
     misc_feature    order(2114..2128,2132..2134,2153..2179,2189..2194,
                     2216..2218,2225..2230,2234..2236)
                     /gene="RGL1"
                     /note="putative RA-Ras interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340730"
ORIGIN      
        1 gcgcgcaccg gcggcggcgg cggcggcggc ggcggcgggc gcgtgtctgt gctgggtgtg
       61 cggcggccgc gcggggccgg ggctggaggc gccgtggctg agccggccgg ggactgcgtt
      121 cgcctgggag cagggcgcat catgccgcgt ccacacaccg gagagaaaac tgagaatgaa
      181 attgctttgg caagctaaaa tgagctcgat tcaggactgg ggtgaagagg tagaggaagg
      241 agctgtgtac catgtcaccc tcaaaagagt ccagattcaa caggctgcca ataaaggagc
      301 aagatggcta ggggttgaag gcgaccagct gcctccgggg catacagtca gtcagtatga
      361 gacgtgtaag atcaggacca taaaagctgg cacgttggag aagctcgtgg agaacctgct
      421 gacagctttt ggggacaatg actttaccta catcagcatc ttcctgtcaa cgtacagagg
      481 ctttgcctcc actaaagaag tgctggagct gctgctggac aggtatggaa acctgacaag
      541 cccaaactgt gaagaagttg gaggccaaaa ttcatcagag tctaagacgg tgatcaggaa
      601 tgcaatcgcc tccatcctga gggcctggct tgaccagtgc gcagaggact tccgagagcc
      661 ccctcacttc ccttgcttac agaaactgct ggattatctc aagcagatga tgccaggctc
      721 tgacccagag agaagagcac agaatcttct tgagcagttt cacaagcaag aagtagaaac
      781 tgacaatggg tttcccagca ccatctcctt cagcctggaa gaggaagagg aactggaggg
      841 tggcgggtct gcagagttca cgtgcttctc agaagatctc gtggctgagc agctgaccta
      901 catggatgca caactattca agaaagtagt gcctcaccac tgcctgggct gcatttggtc
      961 tcgaagggac aagaaggaaa acaaacactt ggctcctacg atccgtgcta ccatctctca
     1021 gtttaatacc ctcaccaaat gcgttgtcag caccattctg gggggcaaag aactcaaaac
     1081 tcagcagaga gccaaaatca tcgagaagtg gattaacatt gctcatgaat gtagaatcct
     1141 gaagaatttc tcctccttga gggccatcgt ttcggcactg cagtccaatt ccatctatcg
     1201 gttaaaaaag acttgggccg cggtgccaaa ggaccgaatg ctgatgtttg aagaactttc
     1261 ggacatcttc tcagaccata ataaccacct gaccagccgg gagctactga tgaaggaagg
     1321 aacctcaaaa tttgcaaacc tggacagcag cgtgaaggaa aaccagaagc gcactcagag
     1381 gcggcttcag ctccagaagg acatgggtgt gatgcaggga actgtgccct acctgggcac
     1441 cttcctgact gacctgacca tgcttgacac tgcccttcag gactacattg agggtgggct
     1501 gataaacttt gagaagagaa gaagggaatt tgaagtgatt gcccaaatca agctcttaca
     1561 gtctgcctgc aacagctatt gtatgacccc agacccaaag ttcatccagt ggttccagag
     1621 gcagcagctc ctaacagagg aggagagcta cgccctctcc tgtgagatcg aagcggcggc
     1681 cgacgccagt gccacctctc ccaagcctcg gaagagcatg gtgaagaggc tcagcctact
     1741 gtttctgggg tcggacatta tcaccagtag cactcccacc aaagaacagc ccaagtccac
     1801 tgccagcggg agctctggtg agagcatgga ctctgtcagt gtgtcatcct gtgagtcaaa
     1861 tcactcagag gcggaggagg gctccatcac tcccatggac acacctgatg aggctcaaaa
     1921 aaagctctcc gagtcctctt cctcatgttc ctccatccac tctatggaca cagcttcctc
     1981 agggatgtcg tccttgatga accccctctc gtcccctccg ccctgcaaca acaacccgaa
     2041 aatccacaag cgctctgtct ccgtgacatc cattacctcg acagtgctgc cccccgttta
     2101 caaccaacag aacgaagaca cctgcataat ccgcatcagc atagaggaca acaatggcaa
     2161 catgtacaag agcatcatgt tgacgagcca ggataaaact cccgccgtga tccagagggc
     2221 gatgttgaag cacaatctgg actcggaccc ggctgagggg tacgagctgg tacaggtcat
     2281 ctcggaggac aaagaactcg tgatcccaga ctcggcaaat gtcttctatg ccatgaacag
     2341 ccaagtgaac tttgacttca tcttacgcaa aaagaattct gtggaagagc aagtaaaact
     2401 gcgtagccgg accagcctga cgttgcccag gacagccaaa cggggctgct ggagcaacag
     2461 acacagcaaa atcaccctct gaaaggagag accagtggcc ccttgcttgc caaaggcagg
     2521 gtggggctga gaacaggccg tggtgattgc agctaccacc gagtgttaga ggatcattgg
     2581 tgaggtggac agatatttat tgagtacctc tggtgtgcaa ggcactatga taggcgtcgt
     2641 ggggaaatcg gagatgaact tgacacgaaa aggatgattc tctttgacct atctgagacc
     2701 aaaatgcaaa attacccaca tttataaata tatatgtatg tacacacatt tggtatgtgt
     2761 gtgtatatat ataaatatga gggacttacg ggatattctg gactatggag aaacaaattt
     2821 gcacaatggc ctgggaagtc gaggtcactt tttacaggga actagaagga actgagaacc
     2881 tcgtctcata ccttccaagt aaacagaatc aaccctagga atacagagtg tcctttgtgc
     2941 cagtattata agcagtccaa actattttta taaagggaga ggattacttt ctcaatcaag
     3001 tgccaccaga aaagaaccac cgcagaggcg ggaactgcca caggctgaat gaaaggccac
     3061 ctcggaaagg ctttggatga gccagtggct ttgacctctg cttgcatcgg ccaatttctg
     3121 ctaccccagg gagggctagg agcagctttg gaggactgtc tgagccactg gtccagccgt
     3181 tgtgacacct ctggaggcaa cacaagccca ttttgatttc tggcaacttc attgtttgtt
     3241 tccccccccc cccccccccc aaagaacata tcacaatcat tcttgcacat ccagccatgt
     3301 tctttggtaa cttatcagcc agaaaggaaa gcacaaaagg atgatgactc atgtggactc
     3361 tgatctgtct tggaatgcca ctacttcatt gtttttttct gattgccttt tgcatgtgaa
     3421 actacatgtc tgcagtcttt tgccatctgg atcgcagtac ctctatatta cgtgcaattt
     3481 gttcctcagg tgtagaaatt cctactgcga ttgattataa ctgatgattt tgagcctgtg
     3541 aacgatttct gaacagcgat tgctctgtga ttagcccctc ggaagatgtt cactgctgag
     3601 agcagtgtcc tgttttacgt attaactttt atggccttcc tgtgcctagt catggggaaa
     3661 gaaatggggc tccgtatatt atccaactcg tttctaaaga ggtacattct tccagatgga
     3721 atcagtaact tttttttttt ttttcaggtt tccacacttg gtatcacagt atcactgtta
     3781 agtgacactt ttgtctccag taccaccatc atcctctccc ttccaaatct gagctgtggc
     3841 tggggtttga actacaaagc catacgtggg atattgacac gtttaagaag cactttcaga
     3901 atgttgtcct ttttaagaag aaaattctca aaataccagt ttttattcca aaaataaaga
     3961 atgaacccag atatgacgtg cagattgtaa tgtggagctt tttttttttt tcctatcctg
     4021 taagacagct cccaaaggtt atgtgtgatt tatgttacat aaattagcca tatgaaatct
     4081 gcaagaaaaa caccagggaa agtctagaga tttgtggcgg tggaccaaag aacgagaatg
     4141 agccaggaag gcctcagatt tcctttaggt ctttctagat cagaccgcat tgtaaagacc
     4201 gactggtttc aactagttga aaagcacttt ttttctgtgt ttgcgaggct ggttcgattt
     4261 gtgcttctgt gcgtggagga gggatggcca gggtgctaga cgtcatgggg actgaaggaa
     4321 acgtaggctc agcctgaatt tcttggttgg aaggtcaaaa agaaaatgta gaactgttgg
     4381 cctggtttag ggcgcggcta ccaagacata cgtgttgtgc ccatgtgctc gccttgtgta
     4441 tttatactgt atatgtagag tctagattta tatactgcaa tgtaaaatat atatatattt
     4501 ttttcctttt ttaaaaaaga caatggaagt tacaagtaga taaaacatag cctcatttat
     4561 ttaatgccac tttaaatgtc ttaaatttgt ttcctggtgg acagccgggt taatactttt
     4621 agctgctcgc atatgcttgt ctttctgcat ctccatcatc tgtttacctt ttggtcaaat
     4681 taataaactg gcttgggact tggttggcat gtgcggccag acccaaaggg attgta
//
LOCUS       XM_032645617            4981 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ral guanine nucleotide dissociation
            stimulator like 1 (RGL1), transcript variant X3, mRNA.
ACCESSION   XM_032645617
VERSION     XM_032645617.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4981
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4981
                     /gene="RGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116760574"
     CDS             427..2727
                     /gene="RGL1"
                     /codon_start=1
                     /product="ral guanine nucleotide dissociation
                     stimulator-like 1 isoform X3"
                     /protein_id="XP_032501508.1"
                     /db_xref="GeneID:116760574"
                     /translation="MEGKPVGEPAHVVSKLKLSTKVESAGHWLVEDHARIWEVLKTEE
                     VEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFA
                     STKEVLELLLDRYGNLTSPNCEEVGGQNSSESKTVIRNAIASILRAWLDQCAEDFREP
                     PHFPCLQKLLDYLKQMMPGSDPERRAQNLLEQFHKQEVETDNGFPSTISFSLEEEEEL
                     EGGGSAEFTCFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSRRDKKENKHLAPTIRA
                     TISQFNTLTKCVVSTILGGKELKTQQRAKIIEKWINIAHECRILKNFSSLRAIVSALQ
                     SNSIYRLKKTWAAVPKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVK
                     ENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREF
                     EVIAQIKLLQSACNSYCMTPDPKFIQWFQRQQLLTEEESYALSCEIEAAADASATSPK
                     PRKSMVKRLSLLFLGSDIITSSTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEE
                     GSITPMDTPDEAQKKLSESSSSCSSIHSMDTASSGMSSLMNPLSSPPPCNNNPKIHKR
                     SVSVTSITSTVLPPVYNQQNEDTCIIRISIEDNNGNMYKSIMLTSQDKTPAVIQRAML
                     KHNLDSDPAEGYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKL
                     RSRTSLTLPRTAKRGCWSNRHSKITL"
     misc_feature    613..1005
                     /gene="RGL1"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     GTPases; N-terminal motif; Region: RasGEFN; smart00229"
                     /db_xref="CDD:214571"
     misc_feature    order(670..672,832..834,844..849,856..858,865..870,
                     979..984,991..993)
                     /gene="RGL1"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:100121"
     misc_feature    1102..1911
                     /gene="RGL1"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases. Small GTP-binding proteins of the Ras
                     superfamily function as molecular switches in fundamental
                     events such as signal transduction, cytoskeleton dynamics
                     and intracellular trafficking; Region: RasGEF; cd00155"
                     /db_xref="CDD:238087"
     misc_feature    order(1201..1209,1246..1251,1255..1263,1267..1272,
                     1279..1284,1291..1293,1396..1398,1405..1410,1414..1422,
                     1426..1437,1441..1446,1504..1506,1513..1515,1528..1536,
                     1543..1545,1675..1683,1690..1698,1702..1710,1714..1725,
                     1768..1770,1780..1782,1885..1887,1894..1899)
                     /gene="RGL1"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
     misc_feature    2359..2619
                     /gene="RGL1"
                     /note="Ras-associating (RA) domain found in Ral guanine
                     nucleotide dissociation stimulator-like 1 (RalGDS-like 1)
                     and similar proteins; Region: RA_RGL; cd17210"
                     /db_xref="CDD:340730"
     misc_feature    order(2359..2373,2377..2379,2398..2424,2434..2439,
                     2461..2463,2470..2475,2479..2481)
                     /gene="RGL1"
                     /note="putative RA-Ras interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340730"
ORIGIN      
        1 ttggctgcga tgggcactgg gggcgggagg ccttggcttt gctgcagccg ccgctgtcaa
       61 ggacctgtca tcagggtcct gcgtaaggcc cggctggcac ggacttgcct gtgaggtggg
      121 atggactggt tgccggacca agtcccctgc agttggcagg agtatgaggc ggagtgatgc
      181 acgcccagcc gcccagcatc gttctagttg tcagaggcat cgcttcggac tgtgtgctgc
      241 ccgtggcttc gttcccgagc cgggagcccc tttctcgggg ttggacctac gctgcgcggc
      301 cagcgggagg tccccaagga cggagtcgaa aggtcatatc ttatgtcagt gctgtgtaac
      361 agcatagcgg ctgcacctgc agaactcgaa ttagatccgt aatgcctcct gcctggctct
      421 ttcaagatgg aggggaagcc cgtgggagag cctgctcatg tggtgtctaa actcaaactt
      481 tccaccaagg tagaaagcgc aggacactgg ctggtggaag atcacgctcg gatatgggaa
      541 gttttaaaga cagaggaggt tgaaggcgac cagctgcctc cggggcatac agtcagtcag
      601 tatgagacgt gtaagatcag gaccataaaa gctggcacgt tggagaagct cgtggagaac
      661 ctgctgacag cttttgggga caatgacttt acctacatca gcatcttcct gtcaacgtac
      721 agaggctttg cctccactaa agaagtgctg gagctgctgc tggacaggta tggaaacctg
      781 acaagcccaa actgtgaaga agttggaggc caaaattcat cagagtctaa gacggtgatc
      841 aggaatgcaa tcgcctccat cctgagggcc tggcttgacc agtgcgcaga ggacttccga
      901 gagccccctc acttcccttg cttacagaaa ctgctggatt atctcaagca gatgatgcca
      961 ggctctgacc cagagagaag agcacagaat cttcttgagc agtttcacaa gcaagaagta
     1021 gaaactgaca atgggtttcc cagcaccatc tccttcagcc tggaagagga agaggaactg
     1081 gagggtggcg ggtctgcaga gttcacgtgc ttctcagaag atctcgtggc tgagcagctg
     1141 acctacatgg atgcacaact attcaagaaa gtagtgcctc accactgcct gggctgcatt
     1201 tggtctcgaa gggacaagaa ggaaaacaaa cacttggctc ctacgatccg tgctaccatc
     1261 tctcagttta ataccctcac caaatgcgtt gtcagcacca ttctgggggg caaagaactc
     1321 aaaactcagc agagagccaa aatcatcgag aagtggatta acattgctca tgaatgtaga
     1381 atcctgaaga atttctcctc cttgagggcc atcgtttcgg cactgcagtc caattccatc
     1441 tatcggttaa aaaagacttg ggccgcggtg ccaaaggacc gaatgctgat gtttgaagaa
     1501 ctttcggaca tcttctcaga ccataataac cacctgacca gccgggagct actgatgaag
     1561 gaaggaacct caaaatttgc aaacctggac agcagcgtga aggaaaacca gaagcgcact
     1621 cagaggcggc ttcagctcca gaaggacatg ggtgtgatgc agggaactgt gccctacctg
     1681 ggcaccttcc tgactgacct gaccatgctt gacactgccc ttcaggacta cattgagggt
     1741 gggctgataa actttgagaa gagaagaagg gaatttgaag tgattgccca aatcaagctc
     1801 ttacagtctg cctgcaacag ctattgtatg accccagacc caaagttcat ccagtggttc
     1861 cagaggcagc agctcctaac agaggaggag agctacgccc tctcctgtga gatcgaagcg
     1921 gcggccgacg ccagtgccac ctctcccaag cctcggaaga gcatggtgaa gaggctcagc
     1981 ctactgtttc tggggtcgga cattatcacc agtagcactc ccaccaaaga acagcccaag
     2041 tccactgcca gcgggagctc tggtgagagc atggactctg tcagtgtgtc atcctgtgag
     2101 tcaaatcact cagaggcgga ggagggctcc atcactccca tggacacacc tgatgaggct
     2161 caaaaaaagc tctccgagtc ctcttcctca tgttcctcca tccactctat ggacacagct
     2221 tcctcaggga tgtcgtcctt gatgaacccc ctctcgtccc ctccgccctg caacaacaac
     2281 ccgaaaatcc acaagcgctc tgtctccgtg acatccatta cctcgacagt gctgcccccc
     2341 gtttacaacc aacagaacga agacacctgc ataatccgca tcagcataga ggacaacaat
     2401 ggcaacatgt acaagagcat catgttgacg agccaggata aaactcccgc cgtgatccag
     2461 agggcgatgt tgaagcacaa tctggactcg gacccggctg aggggtacga gctggtacag
     2521 gtcatctcgg aggacaaaga actcgtgatc ccagactcgg caaatgtctt ctatgccatg
     2581 aacagccaag tgaactttga cttcatctta cgcaaaaaga attctgtgga agagcaagta
     2641 aaactgcgta gccggaccag cctgacgttg cccaggacag ccaaacgggg ctgctggagc
     2701 aacagacaca gcaaaatcac cctctgaaag gagagaccag tggccccttg cttgccaaag
     2761 gcagggtggg gctgagaaca ggccgtggtg attgcagcta ccaccgagtg ttagaggatc
     2821 attggtgagg tggacagata tttattgagt acctctggtg tgcaaggcac tatgataggc
     2881 gtcgtgggga aatcggagat gaacttgaca cgaaaaggat gattctcttt gacctatctg
     2941 agaccaaaat gcaaaattac ccacatttat aaatatatat gtatgtacac acatttggta
     3001 tgtgtgtgta tatatataaa tatgagggac ttacgggata ttctggacta tggagaaaca
     3061 aatttgcaca atggcctggg aagtcgaggt cactttttac agggaactag aaggaactga
     3121 gaacctcgtc tcataccttc caagtaaaca gaatcaaccc taggaataca gagtgtcctt
     3181 tgtgccagta ttataagcag tccaaactat ttttataaag ggagaggatt actttctcaa
     3241 tcaagtgcca ccagaaaaga accaccgcag aggcgggaac tgccacaggc tgaatgaaag
     3301 gccacctcgg aaaggctttg gatgagccag tggctttgac ctctgcttgc atcggccaat
     3361 ttctgctacc ccagggaggg ctaggagcag ctttggagga ctgtctgagc cactggtcca
     3421 gccgttgtga cacctctgga ggcaacacaa gcccattttg atttctggca acttcattgt
     3481 ttgtttcccc cccccccccc cccccaaaga acatatcaca atcattcttg cacatccagc
     3541 catgttcttt ggtaacttat cagccagaaa ggaaagcaca aaaggatgat gactcatgtg
     3601 gactctgatc tgtcttggaa tgccactact tcattgtttt tttctgattg ccttttgcat
     3661 gtgaaactac atgtctgcag tcttttgcca tctggatcgc agtacctcta tattacgtgc
     3721 aatttgttcc tcaggtgtag aaattcctac tgcgattgat tataactgat gattttgagc
     3781 ctgtgaacga tttctgaaca gcgattgctc tgtgattagc ccctcggaag atgttcactg
     3841 ctgagagcag tgtcctgttt tacgtattaa cttttatggc cttcctgtgc ctagtcatgg
     3901 ggaaagaaat ggggctccgt atattatcca actcgtttct aaagaggtac attcttccag
     3961 atggaatcag taactttttt tttttttttc aggtttccac acttggtatc acagtatcac
     4021 tgttaagtga cacttttgtc tccagtacca ccatcatcct ctcccttcca aatctgagct
     4081 gtggctgggg tttgaactac aaagccatac gtgggatatt gacacgttta agaagcactt
     4141 tcagaatgtt gtccttttta agaagaaaat tctcaaaata ccagttttta ttccaaaaat
     4201 aaagaatgaa cccagatatg acgtgcagat tgtaatgtgg agcttttttt ttttttccta
     4261 tcctgtaaga cagctcccaa aggttatgtg tgatttatgt tacataaatt agccatatga
     4321 aatctgcaag aaaaacacca gggaaagtct agagatttgt ggcggtggac caaagaacga
     4381 gaatgagcca ggaaggcctc agatttcctt taggtctttc tagatcagac cgcattgtaa
     4441 agaccgactg gtttcaacta gttgaaaagc actttttttc tgtgtttgcg aggctggttc
     4501 gatttgtgct tctgtgcgtg gaggagggat ggccagggtg ctagacgtca tggggactga
     4561 aggaaacgta ggctcagcct gaatttcttg gttggaaggt caaaaagaaa atgtagaact
     4621 gttggcctgg tttagggcgc ggctaccaag acatacgtgt tgtgcccatg tgctcgcctt
     4681 gtgtatttat actgtatatg tagagtctag atttatatac tgcaatgtaa aatatatata
     4741 tatttttttc cttttttaaa aaagacaatg gaagttacaa gtagataaaa catagcctca
     4801 tttatttaat gccactttaa atgtcttaaa tttgtttcct ggtggacagc cgggttaata
     4861 cttttagctg ctcgcatatg cttgtctttc tgcatctcca tcatctgttt accttttggt
     4921 caaattaata aactggcttg ggacttggtt ggcatgtgcg gccagaccca aagggattgt
     4981 a
//
LOCUS       XM_032645630            8389 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen beta(1-O)galactosyltransferase 2
            (COLGALT2), mRNA.
ACCESSION   XM_032645630
VERSION     XM_032645630.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8389
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8389
                     /gene="COLGALT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 18 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760584"
     CDS             311..2191
                     /gene="COLGALT2"
                     /codon_start=1
                     /product="procollagen galactosyltransferase 2"
                     /protein_id="XP_032501521.1"
                     /db_xref="GeneID:116760584"
                     /translation="MAASPAAALAWALLLLSWALLRGGCRARFAAEPDSEDDEGEAVV
                     FSESPLQRPTVMVAVLARNAAHTLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEIL
                     REWLKNVQRAYHYVEWRPMDEPESYPDEIGPKHWPGSRFAHVMKLRQAALRTAREKWS
                     DYILFIDVDNFLTNPQTLNLLIAENKTVVAPMLESRGLYSNFWCGITPQGFYKRTPDY
                     LQIREWKRLGCFPVPMVHSTFLIDLRKEASDKLMFYPPHQDYTWTFDDIIVFAFSSRQ
                     AGIQMHLCNREHYGYLPIPLKSHQTLQEDIENLIHVQIEAMIDHPPMEPSQFVSVVPK
                     YPDKMGFNEIFMINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIE
                     MLPGYRDPYSSRPLTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLM
                     KLMDDIDRVQLDWELIYIGRKRMQLKEPEKAVPNVVNLVEADYSYWTLGYVISLEGAQ
                     KLVGANPFGKMLPVDEFLPIMYNKHPVAEYMEHYESRDLKAFSAEPLLIYPTHYTGQP
                     GYLSDTETSTIWDNETVATDWDRTHAWKSRKQGHIYRNAKNTEALPPPTSLDTVPSRD
                     EL"
     misc_feature    order(488..490,494..496,578..580,809..811,815..817)
                     /gene="COLGALT2"
                     /note="active site"
                     /db_xref="CDD:132997"
     misc_feature    494..835
                     /gene="COLGALT2"
                     /note="Glycosyl transferase family 2; Region:
                     Glyco_tranf_2_4; pfam13704"
                     /db_xref="CDD:433416"
     misc_feature    1331..1888
                     /gene="COLGALT2"
                     /note="Glycosyltransferase family 25 [lipooligosaccharide
                     (LOS) biosynthesis protein] is a family of
                     glycosyltransferases involved in LOS biosynthesis. The
                     members include the beta(1,4) galactosyltransferases: Lgt2
                     of Moraxella catarrhalis, LgtB and LgtE of...; Region:
                     Glyco_transf_25; cl01298"
                     /db_xref="CDD:470150"
ORIGIN      
        1 tcagctgtac aagctgagcc tggactagag gaactttccg cgggactcgg gacaaacagc
       61 cgcaccgaca cgactgtctg cgagcctgag tcccagacga gcgccggcgg cggcaggtac
      121 tccggacccc gcggcagggc ctgagcagtg cagctggggc ggcggcggcg ccggcgacgg
      181 cggcggcggg agggtcccgg gctgccgagg tttagccagt gcgcgcgcgc cagccgcctc
      241 ccctccgccc ctcgctgccg gcctcgggca tccacggccg gtggtccagc cgcccgccac
      301 ggccctgaac atggccgcaa gccccgctgc cgccctggcc tgggcgctgc tactcctctc
      361 gtgggctctg ctccgcggcg gctgccgggc gcgcttcgct gccgagccgg actccgaaga
      421 cgacgaaggg gaggcggtag tattctccga gtcccccctg cagagaccca cggtgatggt
      481 ggccgtcctc gcgcgtaacg ctgcgcacac gctgcctcac ttcctcggct gcctggagcg
      541 gctggactac cccaagagca ggatggccat ctgggcagcc actgatcaca atgtggataa
      601 tacaacagaa atactcaggg agtggttgaa aaatgtccag agagcctatc actatgtgga
      661 gtggaggcct atggatgaac ctgagtctta tcctgatgaa atcggaccaa agcactggcc
      721 tggctcccgt tttgcccatg tgatgaaact acgacaggca gcccttcgaa ctgcgaggga
      781 aaaatggtca gactacattc tgttcataga tgttgacaac ttcctgacta atccacagac
      841 cctcaatcta ctgattgcag aaaacaaaac cgttgtggcc cccatgctgg agtctcgggg
      901 cctgtactct aatttctggt gcggaatcac acctcagggc ttctataaac ggaccccaga
      961 ctatcttcag attagagaat ggaagaggtt gggctgtttt ccggtcccca tggtccactc
     1021 cacattccta attgacctca ggaaggaagc ctctgacaag ctgatgttct acccccctca
     1081 ccaggactac acctggacct ttgatgacat catcgtcttt gccttctcca gcaggcaagc
     1141 aggcatccag atgcacctct gcaacagaga gcactacggc tacctgccca tccccctgaa
     1201 gtcccatcag accctacagg aggacattga gaacctcatc catgtgcaga tagaagcaat
     1261 gattgaccat cctccaatgg aaccttccca gttcgtctca gttgtcccta aatatccaga
     1321 caagatggga ttcaatgaga ttttcatgat aaacctgaag cgtagaaagg acaggcggga
     1381 ccggatgtta cgtaccctgt acgagcagga gattgaagtc aagattgtcg aggctgtgga
     1441 tggaaaggca ctcaacacaa gccagctgaa ggccctgaat attgaaatgc tgccaggata
     1501 tcgagatccc tactcctcca ggcctctaac taggggtgaa attggctgct tccttagcca
     1561 ctactctgtc tggaaagagg taattgaccg agagctggag aagactcttg ttattgagga
     1621 tgatgtgcgt tttgaacatc agtttaagaa gaagctcatg aagctgatgg atgatattga
     1681 tcgagtccag ctggattggg aactgattta tattggcagg aagaggatgc aactaaaaga
     1741 gccagagaaa gctgtgccca atgtggtaaa tctggtcgaa gctgactatt cttactggac
     1801 tctgggctat gttatctctc tggaaggagc acagaagctt gttggagcca atccttttgg
     1861 gaagatgcta ccagtggatg agtttctgcc aatcatgtac aacaagcatc ctgttgctga
     1921 gtacatggag cattacgaat ccagggactt gaaagccttc tctgcagaac ccttgctcat
     1981 ctacccaaca cactacacag gccagccagg gtatctgagt gacacggaga cctcaaccat
     2041 ctgggacaat gagacagtgg ccactgactg ggacaggaca catgcctgga agtccaggaa
     2101 gcaaggtcac atctaccgca atgccaagaa cacagaggcc ctgccaccgc caacctccct
     2161 ggacactgtg ccttcgagag atgagttatg agggctccat gggggattta ctgccctttg
     2221 gttttcctaa tgggctgttg atatgtttgt tccactttct tttcatggtc acgatcacct
     2281 aaccaaagtg gtctaatgtg attgatcaaa attagtatat tttgacaggg gaagagaata
     2341 gggaaactaa acccaaattt cctagatggc tagaaaatag gctttatggc aaccattaag
     2401 atgaacttca atccagacac cttgtccctc agttcattac ccatatgata ctggttgtca
     2461 cattgaggtt gaacagcatg gctcggagat tcgtccaagg gaaaggtgat caccacacta
     2521 tcacgtcaat aaatgggtag gcctggcagc caagtcaact ggaccacatc tattggtcta
     2581 gtgggcccat tttatgtcat agatgtgacc ttgaaaactt gagtatgttc caagttcggg
     2641 gtgtggggga gggggaatca gatcatttaa aatcaaatta attgggcttt ttctttaaag
     2701 gcattttgcc gtgagcctta ttacaaagtg actttttcat cttagtcccc gttatccaac
     2761 agggatgggt atttgggtct gtgtgtgact tggcatttga ctatcatggc aattgaagct
     2821 cccatgaaga ggggtccatt ttgccatgag catatagttt cataggtatt tgagggtttg
     2881 tgtaggtatt tgaggaaagc actcaaactt tggctttctt tattatggtc gcttgagttg
     2941 ggatgctcta tttatgaaga taaatttaat atataagggg ctgggactgg tgtgtaattg
     3001 ctgtcccggg ggttcatgtg ctgccccagc acgtcagact gtcctctcca cccagagcct
     3061 gggagtgagt tgcaggtgtg agttttatga gtcactgtta agaggcagag cacaacttta
     3121 ggccagaaac tgtccttgcc tgggattttc attctatttt gaattattta ttttacaaaa
     3181 tgtgggggaa atgtctgtag gataaggcag agaaacatat gtgttaggct tttattgcct
     3241 cctgggaagt ggtgagtgta gacacgttgg ttccagaatc tggttcttct gcatttccca
     3301 gcctgactct tacaaggagg cctgttgagt gggagattct aaccttctgg aaacaaatga
     3361 ttctccacct caggcgagag accttggtta gaaacaatgg actgatcaac tgatttagac
     3421 caacaaccag ggaagccttg gagtcaggat cctgggcaga ccacctctct gctttcttca
     3481 taaatggatt ttatgtaaaa tgcagagttg gactacatca tctgtttcag ctccacaatc
     3541 tgtgatcctt ggatatctca tgctggtttg ttttaggttt ctattctcat gcctgcaagc
     3601 agtaaaacgt ggtctccaga aatcccctcc ccaagcatcc tgtccacaca cgctcctctc
     3661 tccgtgtcct gggtgttgac tctgagcttc atgctttgga gcagaacccg ttggtggcct
     3721 tgctgggtgc accaagcttc ctgctcccca tgagggcccc aggctgcagg acaacccggc
     3781 agcttccttc cacagaacac caacctcggc cttccctctt gacttatggt tggttcttct
     3841 gcattgacca ataagccagg agactgaggg aagggatctc agctgcctga tttttactgc
     3901 ttagacatag ctatcagagc ttgactcttt gtctagaaaa acagagcatc tggggagcta
     3961 gtgaaaaacc cttaggcgat tcctaaggtt tccttgggta tgctgtgctt cgtttgcgta
     4021 tttgagtgtg tgcagatgtg cgtgaatttc atgttttgtt ttttttttaa agaggtgggc
     4081 ggaggctgag gtattgggag tagaggaaga tttaattaat ttttgtgtgg ttatgtttca
     4141 tagagaacat tggtggtttt tttttttctt ttttcctgtc agctggtctg gtgggtttat
     4201 gaattcccaa tctttttttt tttgaattct cattcttaaa agacattgtt cataaattct
     4261 agaattttag attaggactg ttctactgtg aataaaattc tggctctgtt agcccagccg
     4321 ttgcttttct ccactcaggt ctagaatccc aagcagtgtt ctttcattgt gaacattgtg
     4381 agctgcagac gcagcttttc tttagaaggt catctcttca gcaatccagg gattccttga
     4441 cctcattatt ctttcctgcc tcccgtctag cctcaagtca agacattaga ccttcacggt
     4501 gtcagaggac tttgcctccg tcatggcacc tgctgtctgc ctctggaagt taaaccctct
     4561 ctggatcttg agatccaagg tgtaatcttc tggatggccg gccctgactt cagcagtgct
     4621 ggtgctgcta agtgtggact gagtatgtac aatatgcaga cgacacactg cacgggcctt
     4681 gctttgttca ctggggcctg ctccaggaac tctggaaaac aagagccagc atcccagcat
     4741 cctacactgt ctgtcatgct ctgtcatttc agggtgggga agtgataaac tacttgcctt
     4801 ctagagcact ttgtgaaaaa ttaaaaaacg tgcaactcta tgattgttca ttggttcctc
     4861 caacgctggt caacagccaa caccgctgga atttccaggt ctgcaccggc caaggatgtc
     4921 agaggccaaa gacaatgcag agatttccag taaaattctg gtgtcggaaa caaaattccc
     4981 attcagctac acacatggga atattttcac ttacagttgg aacaaatcca tctaattagt
     5041 aactgtaaga taaagatgag ttttcccaag aggcttctac aatgtgcttt caagacattc
     5101 tttccaagag aggctgagat ggcagtgagc tggacagcat gcaaaggaat aattgggatg
     5161 cccagggccc ccagtgcctg tggaacagca acaattcact gtcctgcatc tgattagacc
     5221 aattcgctgg cctgctggag gcttggatgt cagatgttat ataaacgagg atcatcagaa
     5281 gtagacatct gggggcaagt tggtgctttt cacccacccc acgggctccc catgcatcct
     5341 aggtgggcgt taactcgcaa tgccatcctg gtccttacgg ccccatttcc ccacctgcaa
     5401 gatgaaatga tgctcaggat atcaggcagc agttctccga ccagcagcag atctctcctt
     5461 ggagacctga cagaaccaac cagatgcaca tctaaccaag cccccatctc aagtcctcac
     5521 tgccatctcc tccaaacaaa catttttcgg agaatgtggg aagatgaaca aagccatgca
     5581 ccctagtgag aagacagaac tcctttgtgc ggggacggaa atgctcgtct actccaggtg
     5641 ccctcctaca tttccccacc tcccctgcgt ttagattggg gccatacact ggccaacgga
     5701 ctgtgaatgg aagtgatgtg gtccctttcg tctaaggcag tcaggaagag ttgtgagttc
     5761 tctctaccat cactgggagt tgaaagagaa atctgagatg gcggagttgc aagatggaag
     5821 ctgcctggac ccttggagcc gctaaggaga gctgcccgat ttgcaatacc tagctcagtt
     5881 ttcaacgtgt catatcttaa gttactgaga tttcatggtt tgttacttta gcctagacta
     5941 aatcccttcc agaattattt cattttaaca gagatcctag gggaaacggt aactcaaaac
     6001 atgacagaaa taacttttca tagtggaact gtggatacag gtcgtcactg gtgccattgc
     6061 ggcagccctg tagaaaaaga cggttgacat cggggaaact tctcgatacc actaaaactg
     6121 ggacacgggg caataccgta tgcctctaat ggtcctgtgc tgcatggcaa atttgaaaag
     6181 tctccaaaga aggaaatttt aagacattat tccttcaggc aaagtctcac caagctgctt
     6241 ctacagggag gcaaaacaag ggaacccgtt ttctcaaatg atcttgaaaa catagtcacc
     6301 tagtgccaga cacagaaatc ccttttcttc ctgcccatat tatggattat taaaacaaac
     6361 acctacttgg ctttctccac tatcccacaa ggacccagaa aacttgataa tttggatcca
     6421 tttaggaatc ccattttttt tttttttttg gaaacaatgt gacggaatga caacaggcat
     6481 ctgttgaatg aagctgcctt ttgggaagac cttgtttcct tcctccacag aggccctccc
     6541 ggcttccgga gcaccatgga cggtttcaag aattgtgcag atggtagcaa ttggagactc
     6601 aggaaaggct gtcaaaaaga aggcaaagta ctgccttgga tcccaactct aagtctgatt
     6661 ttatacaagg tgtccccagc caaactactc ctaagaatgc tgtccagcaa ggcatcacat
     6721 ctgatggcag tctcctaaga cgtcattctt tcccctaaat gcgcatgaca cttaccagtg
     6781 gagagggtcc ctcctaactg tgccactggc tttccctctg ctccctccaa ctgaaccagc
     6841 atgggcttcc aaaatgctcc ttgacatacc tggaacccag atccaccaga ttaatactcc
     6901 agatacaatc cctttgggtc tggccgcaca tgccaaccaa gtcccaagcc agtttattaa
     6961 tttgaccaaa aggtaaacag atgatggaga tgcagaaaga caagcatatg cgagcagcta
     7021 aaagtattaa cccggctgtc caccaggaaa caaatttaag acatttaaag tggcattaaa
     7081 taaatgaggc tatgttttat ctacttgtaa cttccattgt cttttttaaa aaaggaaaaa
     7141 aatatatata tattttacat tgcagtatat aaatctagac tctacatata cagtataaat
     7201 acacaaggcg agcacatggg cacaacacgt atgtcttggt agccgcgccc taaaccaggc
     7261 caacagttct acattttctt tttgaccttc caaccaagaa attcaggctg agcctacgtt
     7321 tccttcagtc cccatgacgt ctagcaccct ggccatccct cctccacgca cagaagcaca
     7381 aatcgaacca gcctcgcaaa cacagaaaaa aagtgctttt caactagttg aaaccagtcg
     7441 gtctttacaa tgcggtctga tctagaaaga cctaaaggaa atctgaggcc ttcctggctc
     7501 attctcgttc tttggtccac cgccacaaat ctctagactt tccctggtgt ttttcttgca
     7561 gatttcatat ggctaattta tgtaacataa atcacacata acctttggga gctgtcttac
     7621 aggataggaa aaaaaaaaaa agctccacat tacaatctgc acgtcatatc tgggttcatt
     7681 ctttattttt ggaataaaaa ctggtatttt gagaattttc ttcttaaaaa ggacaacatt
     7741 ctgaaagtgc ttcttaaacg tgtcaatatc ccacgtatgg ctttgtagtt caaaccccag
     7801 ccacagctca gatttggaag ggagaggatg atggtggtac tggagacaaa agtgtcactt
     7861 aacagtgata ctgtgatacc aagtgtggaa acctgaaaaa aaaaaaaaaa gttactgatt
     7921 ccatctggaa gaatgtacct ctttagaaac gagttggata atatacggag ccccatttct
     7981 ttccccatga ctaggcacag gaaggccata aaagttaata cgtaaaacag gacactgctc
     8041 tcagcagtga acatcttccg aggggctaat cacagagcaa tcgctgttca gaaatcgttc
     8101 acaggctcaa aatcatcagt tataatcaat cgcagtagga atttctacac ctgaggaaca
     8161 aattgcacgt aatatagagg tactgcgatc cagatggcaa aagactgcag acatgtagtt
     8221 tcacatgcaa aaggcaatca gaaaaaaaca atgaagtagt ggcattccaa gacagatcag
     8281 agtccacatg agtcatcatc cttttgtgct ttcctttctg gctgataagt taccaaagaa
     8341 catggctgga tgtgcaagaa tgattgtgat atgttctttg ggggggggg
//
LOCUS       XR_004351768             547 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760587
            (LOC116760587), ncRNA.
ACCESSION   XR_004351768
VERSION     XR_004351768.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..547
                     /gene="LOC116760587"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116760587"
     ncRNA           1..547
                     /ncRNA_class="lncRNA"
                     /gene="LOC116760587"
                     /product="uncharacterized LOC116760587"
                     /db_xref="GeneID:116760587"
ORIGIN      
        1 tgtgctcttc ggttctggga gaccctggag gaggagagag cccgcctaag ttgatgtcta
       61 cagattgaat ttccagaggc ttaggaggag gagttctcca atgccctgtt tccaggcctt
      121 gctcaggaag ccctgtattc attcaggaga ccatccttca aggttttcag atgagcttat
      181 gagggggcaa tctttaaaag tccaaagcag atgcatccgg ggccttcagc agatgtgttg
      241 ctttgagtgt gtaatccggg agcagcgatc tctgggcacg tgaatgccag caggcacctc
      301 tcctgttccg gggtggaggt tttcagacgc tgcatcttct aaattcagcc tctgtgctac
      361 gaaccttgct tccagaggac tcataagctg tagaacattt taacgcgatg ccacaacaca
      421 gagtgctgcc ttgtagacgg agcttgcaga tggatcccag tgaccctctc atctacccgc
      481 ccgccttcct gtgcgttggt cggaggaatt cttagcgtga tgatataatc tgtgtgttgg
      541 gaaagtg
//
LOCUS       XM_032645655            1313 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tetraspanin 1 (TSPAN1), mRNA.
ACCESSION   XM_032645655
VERSION     XM_032645655.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1313
                     /gene="TSPAN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760589"
     CDS             153..878
                     /gene="TSPAN1"
                     /codon_start=1
                     /product="tetraspanin-1"
                     /protein_id="XP_032501546.1"
                     /db_xref="GeneID:116760589"
                     /translation="MQCFSFIKTMMILFNMLIFLCGVALLAVGIWVSVDGPSFMKIFG
                     PLSSSAMEFVNVGYFLIAAGAVLLTLGFLGCYGAQTENKCALMMFFFILLIIFIAEVA
                     AAVVALVYTTMAENFLTLMVVPTIKKEYGSQKDFTQVWNSTMEGLKCCGFNNYTDFED
                     SPYEKENNVFPPYCCFDHGNGTFVEPCTRVEAQNQKVEGCFNQLLYDIRTNAVTVGGV
                     AAGIAGLELAAMIVSMYLYCNLK"
     misc_feature    171..866
                     /gene="TSPAN1"
                     /note="Tetraspanin family; Region: Tetraspanin; pfam00335"
                     /db_xref="CDD:459767"
     misc_feature    480..788
                     /gene="TSPAN1"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), uroplakin_I_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     Region: uroplakin_I_like_LEL; cd03156"
                     /db_xref="CDD:239409"
     misc_feature    order(489..491,501..503,507..512,519..521,567..569,
                     576..581,588..593)
                     /gene="TSPAN1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239409"
ORIGIN      
        1 cccgcccaca ggtgagcagt gctgtgtgag agccagctcc gtctccccgc ctgcccactc
       61 agtggcagtt ccccggagct gcagttccct ctggagcctc agcagatccc tctttcagaa
      121 ctcactacca agaaccctga acaggagcca ccatgcagtg cttcagcttc attaagacca
      181 tgatgatcct cttcaatatg ctcatctttc tgtgtggtgt ggccctgttg gcagtgggca
      241 tctgggtgtc agtcgatgga ccatccttca tgaagatctt cgggccacta tcatccagtg
      301 ccatggagtt tgtcaacgtg ggctacttcc tcatcgcagc tggcgctgtg ctcctcactc
      361 ttggtttcct gggctgctat ggtgcccaga ctgagaacaa gtgtgctctc atgatgttct
      421 tcttcatcct cctcatcatc ttcattgctg aggttgcagc tgctgtggtt gccttggtgt
      481 acaccacaat ggctgagaac ttcctgacgt tgatggtagt gcccaccatc aagaaagagt
      541 acggttccca aaaagacttc acccaagtgt ggaactccac catggaaggg ctcaagtgct
      601 gtggcttcaa caactacaca gattttgagg actctcccta tgaaaaagag aacaacgtct
      661 ttcccccata ctgttgcttt gaccatggca atggcacatt tgtggaaccc tgcactaggg
      721 tcgaggccca gaaccagaaa gtagagggtt gcttcaatca gcttctgtat gacatcagaa
      781 ccaatgcagt taccgtgggt ggtgtggcag ctggaattgc gggcttagag ctggctgcca
      841 tgattgtgtc catgtatctg tactgcaatc tgaaataagt cggcttctgc ctccgccact
      901 gctgctgcca tacaggaact gagaagaggc accccagcac tgccaagagg cagtgatcag
      961 cgtggggaca ggatctaaca gtgtcacttg ggctggagtg ggcctggggc caaataggca
     1021 ccaccccctt gaacctgtgc cagacttgtc cttccattgg tgatgttggg gtccacctat
     1081 ttcagagcct ctaaggtagc caatcctctt gcccattcct ccagtctgtt tcttaaaccc
     1141 ttgataccct ctcaggccag ggggtggggt gctcttggtg atcccagtac tccacagggg
     1201 ggattaaagg cactgcaccg ataacacgag catatgcaag atcagcagtc accaggcaga
     1261 tgtgtagaaa gcacttcaga actcaaaaac ccattaaaat gtttccattt gga
//
LOCUS       XM_032645668            4410 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X1, mRNA.
ACCESSION   XM_032645668
VERSION     XM_032645668.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4410
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4410
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760592"
     CDS             259..4302
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X1"
                     /protein_id="XP_032501559.1"
                     /db_xref="GeneID:116760592"
                     /translation="MVNVAKQWHRSGGFWTKLKKNLTMLKQCHSRTGMSSRCCLVHPL
                     HAFLKCCAAKGSEEYVCASKPKTQESELKISAVFSVSDSPLAQQLTPGFQLSLASSGP
                     NISLPSVPAVAIQVFCSGCKKMLYKGQTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPP
                     KKTCANCSKDILNPKDVITTRFENSSPSKDFCSQSCLSSYELKKKPVVTIYTNSISTR
                     CSMCQKNADIRFEVKYQNVVHGLCSDACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQ
                     SQKVFSSTSITAYKQNSAQTPPYALGKSLRPSAEMIETTNDSGKTELFCSINCLSAYR
                     VKTVISSGVQVFCHSCKTSAVPQYHLAMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSS
                     AVPLSQGQVVVSPPSGSAVSAGGGNTSAVSPSSVSGSAAANLQPPSAQSQRVALTHTV
                     VKLKCQHCNHLFATKPELLFYKGKMFLFCGKICSDEYKKRNKVMAMCDYCKLQKIIKE
                     TVRFSGVDKPFCSEVCKFLSARDFGERWGNYCKMCSYCSQTSPNLVENRLEGKLEEFC
                     CEDCMTKFTVLFYQMAKCDGCKRQGKLSESIKWRGNIKHFCNLFCVMEFCHRQQIMND
                     PLSQNKVNISKAQTASVELPSARTNTIPVITNVVSLAKISPAQLTENVVLKGAVNTKE
                     AAKIIEDGSTQTDAMKLLSSQSLKLLKNKALLCKPVTQTKATSCKPHTQHKECQTDLS
                     MPNEKNDVELDSPPAKKKRIGFFQTYDVEYLKVGFIICPGSKESSPRPQCVICGEILS
                     SENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSALKKCLLVEKSLVKASYL
                     IAFQIAASKKPFSIAEEVVKPYLVEMCSEVLGSSAGDKMKTIPLSNSTIGHRIDELSA
                     DIEDQLIQKVRESKWFALQIDESLEISNTTLLLCYIRFIDYGCSDIKEELLCCIEMPS
                     QMTGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGRCSGLRAKIQEVAMNTVAFT
                     HCFIHREHLAAEKLSPCLHEILMQSAQILSFIKSNALNSRMLTILCEEMRSEHVNLPL
                     HAEVRWISRGRILTRLFELRHEIEIFLNQNHSDLAKYFFDEEWVAKLAYLSDIFSLIN
                     ELNLSLQGSMTTLFNLYNKIDILKKKLKMWLKRMQENDYDMFPSFSEFSNSSGLNMSS
                     IASIIFEHLEGLSQMLNDCYPPEEDLCSGNLWIINPFMNHQNSNLTDFEEEKLARLSS
                     DLGLQSVFKSMSVTQFWINAKASYPELHEKALKFLLPFSTIYLCDATFSALTESKQRN
                     LLVSGPALRLAVTSFIPRIEKLVKEKE"
     misc_feature    736..858
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2941..3300
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 ggtttcgctg caggaacacg ctgacaggca tttgcgggtc gcgttttctc caaaagatac
       61 aacgttgctg cgtttgtacc ctgtgacagg cgtgggaatt attggtgggg acgagatttt
      121 gggagcgatt acgacaagag agcccataga ttgttgtaac tgtggcagga atccaactat
      181 ctatcaccaa gaagaaatct attagtttta gaccggggaa ttcctttacc taaaaaatta
      241 gaatgaaaga acctttggat ggtgaatgtg gcaaagcaat ggcaccgcag cgggggcttc
      301 tggacaaaat taaagaagaa cctgacaatg ctcaagcagt gtcattccag gacagggatg
      361 tcaagtagat gttgtcttgt tcatccactc cacgccttcc taaaatgctg tgctgcgaag
      421 ggttctgagg aatatgtatg tgcttcaaag ccaaaaactc aagaaagtga actgaaaatt
      481 agtgctgtct tttcagtcag tgacagtcct cttgcacaac agttgacccc aggctttcag
      541 ctctctcttg catcatctgg cccaaatata tctcttcctt cagttccagc cgtagctatt
      601 caggtttttt gttctggttg caaaaaaatg ctttataagg ggcaaactgc atttcataag
      661 acaggatcta ctcagctctt ttgctccaca aggtgcatca tcggatattc ttcacctgtc
      721 tgcctaccac ctcctcccaa gaaaacctgt gcaaactgct caaaagacat tttaaatcca
      781 aaggatgtga tcacaacccg atttgaaaat tcctctccta gcaaagattt ctgcagccaa
      841 tcatgccttt cttcttatga gctaaagaaa aaacctgttg ttaccatata taccaatagc
      901 atttcaacta ggtgcagtat gtgtcagaag aatgctgata ttcgatttga agttaaatat
      961 caaaatgtgg tacatggtct ttgtagtgat gcctgttttt caaaatttca ttctaccaac
     1021 aaccttacca tgaactgttg tgagaactgt ggaagctatt gctatagtag ctctggtcct
     1081 tgccagtccc agaaggtttt tagttcaaca agtatcacag catataaaca gaattcagcc
     1141 caaactcctc catatgcctt ggggaaatca ttgaggccct cagctgaaat gattgagact
     1201 acgaacgact caggaaaaac agagcttttc tgctctatta attgcttatc tgcttacaga
     1261 gttaagacag ttatttcttc aggtgtccaa gttttctgtc atagttgtaa aacctcagca
     1321 gtccctcagt atcacctagc catgtccaat ggaactatat acagcttctg cagctccagt
     1381 tgtgtggtgg ctttccagaa tgtatttaac aagccaaaag gaacaaactc ttcagcagtg
     1441 cccttgtctc agggccaagt ggttgtaagt ccaccctctg ggtcagcagt gtcagcagga
     1501 ggaggtaaca cctctgccgt ttcccccagc tccgtcagtg gctctgccgc agccaatctc
     1561 cagcctcctt ctgctcagtc ccagcgagtt gctttaaccc atacagttgt taaactcaag
     1621 tgtcagcact gtaaccatct gtttgccaca aaaccagaac ttcttttcta caagggtaaa
     1681 atgtttctgt tttgtggcaa gatttgctct gatgaataca aaaagagaaa taaagttatg
     1741 gcaatgtgtg actactgtaa actgcagaaa attataaagg agactgtacg attctcaggg
     1801 gttgataagc cattctgtag tgaagtttgc aaattcctct ctgcccgtga ctttggagaa
     1861 cgatggggaa actactgtaa gatgtgcagt tattgttcac agacatcccc taatttggta
     1921 gaaaatcgat tggagggcaa gttagaagag ttttgttgtg aagactgcat gaccaaattt
     1981 actgttctat tttatcagat ggccaagtgt gatggttgta aacgacaggg taagctaagt
     2041 gagtccataa aatggcgagg aaacatcaaa catttctgta acctattttg tgtcatggag
     2101 ttttgtcatc gtcagcaaat tatgaatgac cctctgtcac aaaataaagt aaatatttct
     2161 aaggcacaaa ctgcttcagt ggagctccct tctgcaagga caaatacaat accagttata
     2221 accaatgtgg tgtcattggc aaaaatatct cctgcccagc tcacagagaa tgttgtttta
     2281 aaaggtgcag ttaatactaa agaggcagca aagatcattg aagatggaag tacacagaca
     2341 gatgccatga aacttctgtc ttcccagtct ttgaagcttt taaagaacaa agcattattg
     2401 tgcaaacccg tcacacagac caaggccacc tcttgcaaac cacatacaca acacaaggaa
     2461 tgtcagacag atttatctat gcctaacgag aaaaatgatg tggaacttga ttctccacct
     2521 gcaaagaaaa aaagaatagg ttttttccag acttacgatg tggaatattt aaaagttggt
     2581 tttattatct gtccgggatc aaaagaaagc tcaccaaggc cacagtgtgt catctgtgga
     2641 gaaattttat ccagtgaaaa catgaagcca gcaaatcttt ctcatcattt gaagacaaag
     2701 cattcagaat tagaaaacaa accagtagat ttttttgaac aaaaatctct tgaaatggaa
     2761 tgtcaaaaca gtgctttaaa aaagtgttta ctagttgaaa agtcacttgt gaaagcttct
     2821 tatttaattg ctttccaaat tgctgccagc aaaaagccat tttccattgc tgaagaagta
     2881 gttaaaccat atttagtaga aatgtgttca gaagttttgg gttccagtgc tggagacaaa
     2941 atgaaaacca ttcctctttc taatagtaca attggacaca ggattgatga actatctgca
     3001 gacattgaag atcagctgat tcagaaagtc agagagtcaa agtggtttgc ccttcagata
     3061 gatgagtcat tagaaatctc aaataccacc cttcttttgt gctatattcg tttcattgat
     3121 tatggttgta gtgatataaa agaagaatta ttatgttgca ttgaaatgcc ttctcagatg
     3181 actggttttg aaatatttga actaataaat aaatatattg atagtaaatc tctgaactgg
     3241 aagcattgtg ttggtctctg tacagatggg gctgcaagca tgactggtag gtgttctggt
     3301 ttaagggcaa aaattcaaga agttgccatg aatacagtgg catttacaca ttgttttatt
     3361 caccgtgaac atttagcagc agaaaagttg tctccgtgct tacatgaaat tcttatgcag
     3421 tcagcacaaa ttttaagttt tataaagagc aatgcgttga attcacgaat gttaacaatt
     3481 ttgtgtgaag agatgaggtc tgagcacgtg aatttaccac ttcatgctga agtacgttgg
     3541 atatcaagag ggagaatttt aacaagatta tttgaattac gacatgaaat tgaaatattt
     3601 ttaaatcaaa accattcaga tttggccaag tatttttttg atgaggaatg ggttgcaaag
     3661 ctggcctact tatcagatat tttttcactt ataaatgaac taaatttaag tctccaagga
     3721 tctatgacta ctctcttcaa tttgtataat aaaatcgata tacttaagaa aaagttaaaa
     3781 atgtggttga agcgcatgca agagaatgat tatgacatgt tcccttcatt ttctgaattc
     3841 tcaaactcat caggcttaaa tatgagcagt attgcaagca ttatttttga gcacctggaa
     3901 ggactttctc aaatgctcaa tgactgttac ccaccagaag aagacttgtg ttcaggaaat
     3961 ttgtggataa ttaatccttt tatgaatcac caaaatagta atctcacgga cttcgaagag
     4021 gaaaaactag cacggttatc gtcagattta ggattacaat cagtatttaa atcaatgtct
     4081 gtaactcagt tttggataaa tgcaaaggca agttacccag aactccatga aaaggcactg
     4141 aaatttttat tgcctttttc aactatttat ttatgtgatg ctacattttc agctttgact
     4201 gagtcaaaac aaagaaatct gttggtttct ggccctgccc tacgacttgc agtcacatct
     4261 ttcattccga ggatagaaaa attagtaaag gagaaagaat agtaatgtgc atattgctta
     4321 ttatcaaagt ctatactttt gtgttaaatt ttgtatgaga taagtatcct aaaatataaa
     4381 ttcctaatgt ggatgtgtgt tctcggtgat
//
LOCUS       XM_032645679            4362 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X2, mRNA.
ACCESSION   XM_032645679
VERSION     XM_032645679.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4362
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4362
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760592"
     CDS             211..4254
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X1"
                     /protein_id="XP_032501570.1"
                     /db_xref="GeneID:116760592"
                     /translation="MVNVAKQWHRSGGFWTKLKKNLTMLKQCHSRTGMSSRCCLVHPL
                     HAFLKCCAAKGSEEYVCASKPKTQESELKISAVFSVSDSPLAQQLTPGFQLSLASSGP
                     NISLPSVPAVAIQVFCSGCKKMLYKGQTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPP
                     KKTCANCSKDILNPKDVITTRFENSSPSKDFCSQSCLSSYELKKKPVVTIYTNSISTR
                     CSMCQKNADIRFEVKYQNVVHGLCSDACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQ
                     SQKVFSSTSITAYKQNSAQTPPYALGKSLRPSAEMIETTNDSGKTELFCSINCLSAYR
                     VKTVISSGVQVFCHSCKTSAVPQYHLAMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSS
                     AVPLSQGQVVVSPPSGSAVSAGGGNTSAVSPSSVSGSAAANLQPPSAQSQRVALTHTV
                     VKLKCQHCNHLFATKPELLFYKGKMFLFCGKICSDEYKKRNKVMAMCDYCKLQKIIKE
                     TVRFSGVDKPFCSEVCKFLSARDFGERWGNYCKMCSYCSQTSPNLVENRLEGKLEEFC
                     CEDCMTKFTVLFYQMAKCDGCKRQGKLSESIKWRGNIKHFCNLFCVMEFCHRQQIMND
                     PLSQNKVNISKAQTASVELPSARTNTIPVITNVVSLAKISPAQLTENVVLKGAVNTKE
                     AAKIIEDGSTQTDAMKLLSSQSLKLLKNKALLCKPVTQTKATSCKPHTQHKECQTDLS
                     MPNEKNDVELDSPPAKKKRIGFFQTYDVEYLKVGFIICPGSKESSPRPQCVICGEILS
                     SENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSALKKCLLVEKSLVKASYL
                     IAFQIAASKKPFSIAEEVVKPYLVEMCSEVLGSSAGDKMKTIPLSNSTIGHRIDELSA
                     DIEDQLIQKVRESKWFALQIDESLEISNTTLLLCYIRFIDYGCSDIKEELLCCIEMPS
                     QMTGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGRCSGLRAKIQEVAMNTVAFT
                     HCFIHREHLAAEKLSPCLHEILMQSAQILSFIKSNALNSRMLTILCEEMRSEHVNLPL
                     HAEVRWISRGRILTRLFELRHEIEIFLNQNHSDLAKYFFDEEWVAKLAYLSDIFSLIN
                     ELNLSLQGSMTTLFNLYNKIDILKKKLKMWLKRMQENDYDMFPSFSEFSNSSGLNMSS
                     IASIIFEHLEGLSQMLNDCYPPEEDLCSGNLWIINPFMNHQNSNLTDFEEEKLARLSS
                     DLGLQSVFKSMSVTQFWINAKASYPELHEKALKFLLPFSTIYLCDATFSALTESKQRN
                     LLVSGPALRLAVTSFIPRIEKLVKEKE"
     misc_feature    688..810
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2893..3252
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 gttgcgttgc gatggattag gcggaaaaat tcccgtaaga gaaaataatc ttcgtcccag
       61 ggtgggggcc ttgggttcta ctcccccttc cccggtcggt gctccccggg agcagggaag
      121 gaatccaact atctatcacc aagaagaaat ctattagttt tagaccgggg aattccttta
      181 cctaaaaaat tagaatgaaa gaacctttgg atggtgaatg tggcaaagca atggcaccgc
      241 agcgggggct tctggacaaa attaaagaag aacctgacaa tgctcaagca gtgtcattcc
      301 aggacaggga tgtcaagtag atgttgtctt gttcatccac tccacgcctt cctaaaatgc
      361 tgtgctgcga agggttctga ggaatatgta tgtgcttcaa agccaaaaac tcaagaaagt
      421 gaactgaaaa ttagtgctgt cttttcagtc agtgacagtc ctcttgcaca acagttgacc
      481 ccaggctttc agctctctct tgcatcatct ggcccaaata tatctcttcc ttcagttcca
      541 gccgtagcta ttcaggtttt ttgttctggt tgcaaaaaaa tgctttataa ggggcaaact
      601 gcatttcata agacaggatc tactcagctc ttttgctcca caaggtgcat catcggatat
      661 tcttcacctg tctgcctacc acctcctccc aagaaaacct gtgcaaactg ctcaaaagac
      721 attttaaatc caaaggatgt gatcacaacc cgatttgaaa attcctctcc tagcaaagat
      781 ttctgcagcc aatcatgcct ttcttcttat gagctaaaga aaaaacctgt tgttaccata
      841 tataccaata gcatttcaac taggtgcagt atgtgtcaga agaatgctga tattcgattt
      901 gaagttaaat atcaaaatgt ggtacatggt ctttgtagtg atgcctgttt ttcaaaattt
      961 cattctacca acaaccttac catgaactgt tgtgagaact gtggaagcta ttgctatagt
     1021 agctctggtc cttgccagtc ccagaaggtt tttagttcaa caagtatcac agcatataaa
     1081 cagaattcag cccaaactcc tccatatgcc ttggggaaat cattgaggcc ctcagctgaa
     1141 atgattgaga ctacgaacga ctcaggaaaa acagagcttt tctgctctat taattgctta
     1201 tctgcttaca gagttaagac agttatttct tcaggtgtcc aagttttctg tcatagttgt
     1261 aaaacctcag cagtccctca gtatcaccta gccatgtcca atggaactat atacagcttc
     1321 tgcagctcca gttgtgtggt ggctttccag aatgtattta acaagccaaa aggaacaaac
     1381 tcttcagcag tgcccttgtc tcagggccaa gtggttgtaa gtccaccctc tgggtcagca
     1441 gtgtcagcag gaggaggtaa cacctctgcc gtttccccca gctccgtcag tggctctgcc
     1501 gcagccaatc tccagcctcc ttctgctcag tcccagcgag ttgctttaac ccatacagtt
     1561 gttaaactca agtgtcagca ctgtaaccat ctgtttgcca caaaaccaga acttcttttc
     1621 tacaagggta aaatgtttct gttttgtggc aagatttgct ctgatgaata caaaaagaga
     1681 aataaagtta tggcaatgtg tgactactgt aaactgcaga aaattataaa ggagactgta
     1741 cgattctcag gggttgataa gccattctgt agtgaagttt gcaaattcct ctctgcccgt
     1801 gactttggag aacgatgggg aaactactgt aagatgtgca gttattgttc acagacatcc
     1861 cctaatttgg tagaaaatcg attggagggc aagttagaag agttttgttg tgaagactgc
     1921 atgaccaaat ttactgttct attttatcag atggccaagt gtgatggttg taaacgacag
     1981 ggtaagctaa gtgagtccat aaaatggcga ggaaacatca aacatttctg taacctattt
     2041 tgtgtcatgg agttttgtca tcgtcagcaa attatgaatg accctctgtc acaaaataaa
     2101 gtaaatattt ctaaggcaca aactgcttca gtggagctcc cttctgcaag gacaaataca
     2161 ataccagtta taaccaatgt ggtgtcattg gcaaaaatat ctcctgccca gctcacagag
     2221 aatgttgttt taaaaggtgc agttaatact aaagaggcag caaagatcat tgaagatgga
     2281 agtacacaga cagatgccat gaaacttctg tcttcccagt ctttgaagct tttaaagaac
     2341 aaagcattat tgtgcaaacc cgtcacacag accaaggcca cctcttgcaa accacataca
     2401 caacacaagg aatgtcagac agatttatct atgcctaacg agaaaaatga tgtggaactt
     2461 gattctccac ctgcaaagaa aaaaagaata ggttttttcc agacttacga tgtggaatat
     2521 ttaaaagttg gttttattat ctgtccggga tcaaaagaaa gctcaccaag gccacagtgt
     2581 gtcatctgtg gagaaatttt atccagtgaa aacatgaagc cagcaaatct ttctcatcat
     2641 ttgaagacaa agcattcaga attagaaaac aaaccagtag atttttttga acaaaaatct
     2701 cttgaaatgg aatgtcaaaa cagtgcttta aaaaagtgtt tactagttga aaagtcactt
     2761 gtgaaagctt cttatttaat tgctttccaa attgctgcca gcaaaaagcc attttccatt
     2821 gctgaagaag tagttaaacc atatttagta gaaatgtgtt cagaagtttt gggttccagt
     2881 gctggagaca aaatgaaaac cattcctctt tctaatagta caattggaca caggattgat
     2941 gaactatctg cagacattga agatcagctg attcagaaag tcagagagtc aaagtggttt
     3001 gcccttcaga tagatgagtc attagaaatc tcaaatacca cccttctttt gtgctatatt
     3061 cgtttcattg attatggttg tagtgatata aaagaagaat tattatgttg cattgaaatg
     3121 ccttctcaga tgactggttt tgaaatattt gaactaataa ataaatatat tgatagtaaa
     3181 tctctgaact ggaagcattg tgttggtctc tgtacagatg gggctgcaag catgactggt
     3241 aggtgttctg gtttaagggc aaaaattcaa gaagttgcca tgaatacagt ggcatttaca
     3301 cattgtttta ttcaccgtga acatttagca gcagaaaagt tgtctccgtg cttacatgaa
     3361 attcttatgc agtcagcaca aattttaagt tttataaaga gcaatgcgtt gaattcacga
     3421 atgttaacaa ttttgtgtga agagatgagg tctgagcacg tgaatttacc acttcatgct
     3481 gaagtacgtt ggatatcaag agggagaatt ttaacaagat tatttgaatt acgacatgaa
     3541 attgaaatat ttttaaatca aaaccattca gatttggcca agtatttttt tgatgaggaa
     3601 tgggttgcaa agctggccta cttatcagat attttttcac ttataaatga actaaattta
     3661 agtctccaag gatctatgac tactctcttc aatttgtata ataaaatcga tatacttaag
     3721 aaaaagttaa aaatgtggtt gaagcgcatg caagagaatg attatgacat gttcccttca
     3781 ttttctgaat tctcaaactc atcaggctta aatatgagca gtattgcaag cattattttt
     3841 gagcacctgg aaggactttc tcaaatgctc aatgactgtt acccaccaga agaagacttg
     3901 tgttcaggaa atttgtggat aattaatcct tttatgaatc accaaaatag taatctcacg
     3961 gacttcgaag aggaaaaact agcacggtta tcgtcagatt taggattaca atcagtattt
     4021 aaatcaatgt ctgtaactca gttttggata aatgcaaagg caagttaccc agaactccat
     4081 gaaaaggcac tgaaattttt attgcctttt tcaactattt atttatgtga tgctacattt
     4141 tcagctttga ctgagtcaaa acaaagaaat ctgttggttt ctggccctgc cctacgactt
     4201 gcagtcacat ctttcattcc gaggatagaa aaattagtaa aggagaaaga atagtaatgt
     4261 gcatattgct tattatcaaa gtctatactt ttgtgttaaa ttttgtatga gataagtatc
     4321 ctaaaatata aattcctaat gtggatgtgt gttctcggtg at
//
LOCUS       XM_032645688            4280 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X3, mRNA.
ACCESSION   XM_032645688
VERSION     XM_032645688.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4280
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4280
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760592"
     CDS             129..4172
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X1"
                     /protein_id="XP_032501579.1"
                     /db_xref="GeneID:116760592"
                     /translation="MVNVAKQWHRSGGFWTKLKKNLTMLKQCHSRTGMSSRCCLVHPL
                     HAFLKCCAAKGSEEYVCASKPKTQESELKISAVFSVSDSPLAQQLTPGFQLSLASSGP
                     NISLPSVPAVAIQVFCSGCKKMLYKGQTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPP
                     KKTCANCSKDILNPKDVITTRFENSSPSKDFCSQSCLSSYELKKKPVVTIYTNSISTR
                     CSMCQKNADIRFEVKYQNVVHGLCSDACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQ
                     SQKVFSSTSITAYKQNSAQTPPYALGKSLRPSAEMIETTNDSGKTELFCSINCLSAYR
                     VKTVISSGVQVFCHSCKTSAVPQYHLAMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSS
                     AVPLSQGQVVVSPPSGSAVSAGGGNTSAVSPSSVSGSAAANLQPPSAQSQRVALTHTV
                     VKLKCQHCNHLFATKPELLFYKGKMFLFCGKICSDEYKKRNKVMAMCDYCKLQKIIKE
                     TVRFSGVDKPFCSEVCKFLSARDFGERWGNYCKMCSYCSQTSPNLVENRLEGKLEEFC
                     CEDCMTKFTVLFYQMAKCDGCKRQGKLSESIKWRGNIKHFCNLFCVMEFCHRQQIMND
                     PLSQNKVNISKAQTASVELPSARTNTIPVITNVVSLAKISPAQLTENVVLKGAVNTKE
                     AAKIIEDGSTQTDAMKLLSSQSLKLLKNKALLCKPVTQTKATSCKPHTQHKECQTDLS
                     MPNEKNDVELDSPPAKKKRIGFFQTYDVEYLKVGFIICPGSKESSPRPQCVICGEILS
                     SENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSALKKCLLVEKSLVKASYL
                     IAFQIAASKKPFSIAEEVVKPYLVEMCSEVLGSSAGDKMKTIPLSNSTIGHRIDELSA
                     DIEDQLIQKVRESKWFALQIDESLEISNTTLLLCYIRFIDYGCSDIKEELLCCIEMPS
                     QMTGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGRCSGLRAKIQEVAMNTVAFT
                     HCFIHREHLAAEKLSPCLHEILMQSAQILSFIKSNALNSRMLTILCEEMRSEHVNLPL
                     HAEVRWISRGRILTRLFELRHEIEIFLNQNHSDLAKYFFDEEWVAKLAYLSDIFSLIN
                     ELNLSLQGSMTTLFNLYNKIDILKKKLKMWLKRMQENDYDMFPSFSEFSNSSGLNMSS
                     IASIIFEHLEGLSQMLNDCYPPEEDLCSGNLWIINPFMNHQNSNLTDFEEEKLARLSS
                     DLGLQSVFKSMSVTQFWINAKASYPELHEKALKFLLPFSTIYLCDATFSALTESKQRN
                     LLVSGPALRLAVTSFIPRIEKLVKEKE"
     misc_feature    606..728
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2811..3170
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 gggtgttgcg ttgcgatgga ttaggcggaa aaattcccga atccaactat ctatcaccaa
       61 gaagaaatct attagtttta gaccggggaa ttcctttacc taaaaaatta gaatgaaaga
      121 acctttggat ggtgaatgtg gcaaagcaat ggcaccgcag cgggggcttc tggacaaaat
      181 taaagaagaa cctgacaatg ctcaagcagt gtcattccag gacagggatg tcaagtagat
      241 gttgtcttgt tcatccactc cacgccttcc taaaatgctg tgctgcgaag ggttctgagg
      301 aatatgtatg tgcttcaaag ccaaaaactc aagaaagtga actgaaaatt agtgctgtct
      361 tttcagtcag tgacagtcct cttgcacaac agttgacccc aggctttcag ctctctcttg
      421 catcatctgg cccaaatata tctcttcctt cagttccagc cgtagctatt caggtttttt
      481 gttctggttg caaaaaaatg ctttataagg ggcaaactgc atttcataag acaggatcta
      541 ctcagctctt ttgctccaca aggtgcatca tcggatattc ttcacctgtc tgcctaccac
      601 ctcctcccaa gaaaacctgt gcaaactgct caaaagacat tttaaatcca aaggatgtga
      661 tcacaacccg atttgaaaat tcctctccta gcaaagattt ctgcagccaa tcatgccttt
      721 cttcttatga gctaaagaaa aaacctgttg ttaccatata taccaatagc atttcaacta
      781 ggtgcagtat gtgtcagaag aatgctgata ttcgatttga agttaaatat caaaatgtgg
      841 tacatggtct ttgtagtgat gcctgttttt caaaatttca ttctaccaac aaccttacca
      901 tgaactgttg tgagaactgt ggaagctatt gctatagtag ctctggtcct tgccagtccc
      961 agaaggtttt tagttcaaca agtatcacag catataaaca gaattcagcc caaactcctc
     1021 catatgcctt ggggaaatca ttgaggccct cagctgaaat gattgagact acgaacgact
     1081 caggaaaaac agagcttttc tgctctatta attgcttatc tgcttacaga gttaagacag
     1141 ttatttcttc aggtgtccaa gttttctgtc atagttgtaa aacctcagca gtccctcagt
     1201 atcacctagc catgtccaat ggaactatat acagcttctg cagctccagt tgtgtggtgg
     1261 ctttccagaa tgtatttaac aagccaaaag gaacaaactc ttcagcagtg cccttgtctc
     1321 agggccaagt ggttgtaagt ccaccctctg ggtcagcagt gtcagcagga ggaggtaaca
     1381 cctctgccgt ttcccccagc tccgtcagtg gctctgccgc agccaatctc cagcctcctt
     1441 ctgctcagtc ccagcgagtt gctttaaccc atacagttgt taaactcaag tgtcagcact
     1501 gtaaccatct gtttgccaca aaaccagaac ttcttttcta caagggtaaa atgtttctgt
     1561 tttgtggcaa gatttgctct gatgaataca aaaagagaaa taaagttatg gcaatgtgtg
     1621 actactgtaa actgcagaaa attataaagg agactgtacg attctcaggg gttgataagc
     1681 cattctgtag tgaagtttgc aaattcctct ctgcccgtga ctttggagaa cgatggggaa
     1741 actactgtaa gatgtgcagt tattgttcac agacatcccc taatttggta gaaaatcgat
     1801 tggagggcaa gttagaagag ttttgttgtg aagactgcat gaccaaattt actgttctat
     1861 tttatcagat ggccaagtgt gatggttgta aacgacaggg taagctaagt gagtccataa
     1921 aatggcgagg aaacatcaaa catttctgta acctattttg tgtcatggag ttttgtcatc
     1981 gtcagcaaat tatgaatgac cctctgtcac aaaataaagt aaatatttct aaggcacaaa
     2041 ctgcttcagt ggagctccct tctgcaagga caaatacaat accagttata accaatgtgg
     2101 tgtcattggc aaaaatatct cctgcccagc tcacagagaa tgttgtttta aaaggtgcag
     2161 ttaatactaa agaggcagca aagatcattg aagatggaag tacacagaca gatgccatga
     2221 aacttctgtc ttcccagtct ttgaagcttt taaagaacaa agcattattg tgcaaacccg
     2281 tcacacagac caaggccacc tcttgcaaac cacatacaca acacaaggaa tgtcagacag
     2341 atttatctat gcctaacgag aaaaatgatg tggaacttga ttctccacct gcaaagaaaa
     2401 aaagaatagg ttttttccag acttacgatg tggaatattt aaaagttggt tttattatct
     2461 gtccgggatc aaaagaaagc tcaccaaggc cacagtgtgt catctgtgga gaaattttat
     2521 ccagtgaaaa catgaagcca gcaaatcttt ctcatcattt gaagacaaag cattcagaat
     2581 tagaaaacaa accagtagat ttttttgaac aaaaatctct tgaaatggaa tgtcaaaaca
     2641 gtgctttaaa aaagtgttta ctagttgaaa agtcacttgt gaaagcttct tatttaattg
     2701 ctttccaaat tgctgccagc aaaaagccat tttccattgc tgaagaagta gttaaaccat
     2761 atttagtaga aatgtgttca gaagttttgg gttccagtgc tggagacaaa atgaaaacca
     2821 ttcctctttc taatagtaca attggacaca ggattgatga actatctgca gacattgaag
     2881 atcagctgat tcagaaagtc agagagtcaa agtggtttgc ccttcagata gatgagtcat
     2941 tagaaatctc aaataccacc cttcttttgt gctatattcg tttcattgat tatggttgta
     3001 gtgatataaa agaagaatta ttatgttgca ttgaaatgcc ttctcagatg actggttttg
     3061 aaatatttga actaataaat aaatatattg atagtaaatc tctgaactgg aagcattgtg
     3121 ttggtctctg tacagatggg gctgcaagca tgactggtag gtgttctggt ttaagggcaa
     3181 aaattcaaga agttgccatg aatacagtgg catttacaca ttgttttatt caccgtgaac
     3241 atttagcagc agaaaagttg tctccgtgct tacatgaaat tcttatgcag tcagcacaaa
     3301 ttttaagttt tataaagagc aatgcgttga attcacgaat gttaacaatt ttgtgtgaag
     3361 agatgaggtc tgagcacgtg aatttaccac ttcatgctga agtacgttgg atatcaagag
     3421 ggagaatttt aacaagatta tttgaattac gacatgaaat tgaaatattt ttaaatcaaa
     3481 accattcaga tttggccaag tatttttttg atgaggaatg ggttgcaaag ctggcctact
     3541 tatcagatat tttttcactt ataaatgaac taaatttaag tctccaagga tctatgacta
     3601 ctctcttcaa tttgtataat aaaatcgata tacttaagaa aaagttaaaa atgtggttga
     3661 agcgcatgca agagaatgat tatgacatgt tcccttcatt ttctgaattc tcaaactcat
     3721 caggcttaaa tatgagcagt attgcaagca ttatttttga gcacctggaa ggactttctc
     3781 aaatgctcaa tgactgttac ccaccagaag aagacttgtg ttcaggaaat ttgtggataa
     3841 ttaatccttt tatgaatcac caaaatagta atctcacgga cttcgaagag gaaaaactag
     3901 cacggttatc gtcagattta ggattacaat cagtatttaa atcaatgtct gtaactcagt
     3961 tttggataaa tgcaaaggca agttacccag aactccatga aaaggcactg aaatttttat
     4021 tgcctttttc aactatttat ttatgtgatg ctacattttc agctttgact gagtcaaaac
     4081 aaagaaatct gttggtttct ggccctgccc tacgacttgc agtcacatct ttcattccga
     4141 ggatagaaaa attagtaaag gagaaagaat agtaatgtgc atattgctta ttatcaaagt
     4201 ctatactttt gtgttaaatt ttgtatgaga taagtatcct aaaatataaa ttcctaatgt
     4261 ggatgtgtgt tctcggtgat
//
LOCUS       XM_032645697            4348 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X4, mRNA.
ACCESSION   XM_032645697
VERSION     XM_032645697.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4348
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4348
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760592"
     CDS             197..4240
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X1"
                     /protein_id="XP_032501588.1"
                     /db_xref="GeneID:116760592"
                     /translation="MVNVAKQWHRSGGFWTKLKKNLTMLKQCHSRTGMSSRCCLVHPL
                     HAFLKCCAAKGSEEYVCASKPKTQESELKISAVFSVSDSPLAQQLTPGFQLSLASSGP
                     NISLPSVPAVAIQVFCSGCKKMLYKGQTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPP
                     KKTCANCSKDILNPKDVITTRFENSSPSKDFCSQSCLSSYELKKKPVVTIYTNSISTR
                     CSMCQKNADIRFEVKYQNVVHGLCSDACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQ
                     SQKVFSSTSITAYKQNSAQTPPYALGKSLRPSAEMIETTNDSGKTELFCSINCLSAYR
                     VKTVISSGVQVFCHSCKTSAVPQYHLAMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSS
                     AVPLSQGQVVVSPPSGSAVSAGGGNTSAVSPSSVSGSAAANLQPPSAQSQRVALTHTV
                     VKLKCQHCNHLFATKPELLFYKGKMFLFCGKICSDEYKKRNKVMAMCDYCKLQKIIKE
                     TVRFSGVDKPFCSEVCKFLSARDFGERWGNYCKMCSYCSQTSPNLVENRLEGKLEEFC
                     CEDCMTKFTVLFYQMAKCDGCKRQGKLSESIKWRGNIKHFCNLFCVMEFCHRQQIMND
                     PLSQNKVNISKAQTASVELPSARTNTIPVITNVVSLAKISPAQLTENVVLKGAVNTKE
                     AAKIIEDGSTQTDAMKLLSSQSLKLLKNKALLCKPVTQTKATSCKPHTQHKECQTDLS
                     MPNEKNDVELDSPPAKKKRIGFFQTYDVEYLKVGFIICPGSKESSPRPQCVICGEILS
                     SENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSALKKCLLVEKSLVKASYL
                     IAFQIAASKKPFSIAEEVVKPYLVEMCSEVLGSSAGDKMKTIPLSNSTIGHRIDELSA
                     DIEDQLIQKVRESKWFALQIDESLEISNTTLLLCYIRFIDYGCSDIKEELLCCIEMPS
                     QMTGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGRCSGLRAKIQEVAMNTVAFT
                     HCFIHREHLAAEKLSPCLHEILMQSAQILSFIKSNALNSRMLTILCEEMRSEHVNLPL
                     HAEVRWISRGRILTRLFELRHEIEIFLNQNHSDLAKYFFDEEWVAKLAYLSDIFSLIN
                     ELNLSLQGSMTTLFNLYNKIDILKKKLKMWLKRMQENDYDMFPSFSEFSNSSGLNMSS
                     IASIIFEHLEGLSQMLNDCYPPEEDLCSGNLWIINPFMNHQNSNLTDFEEEKLARLSS
                     DLGLQSVFKSMSVTQFWINAKASYPELHEKALKFLLPFSTIYLCDATFSALTESKQRN
                     LLVSGPALRLAVTSFIPRIEKLVKEKE"
     misc_feature    674..796
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2879..3238
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 gcggtttcgc tgcaggaaca cgctgacagg catttgcggg tcgcgttttc tccaaaagat
       61 acaacgttgc tgcgtttgta ccctgtgaca ggcgtgggaa ttattggaat ccaactatct
      121 atcaccaaga agaaatctat tagttttaga ccggggaatt cctttaccta aaaaattaga
      181 atgaaagaac ctttggatgg tgaatgtggc aaagcaatgg caccgcagcg ggggcttctg
      241 gacaaaatta aagaagaacc tgacaatgct caagcagtgt cattccagga cagggatgtc
      301 aagtagatgt tgtcttgttc atccactcca cgccttccta aaatgctgtg ctgcgaaggg
      361 ttctgaggaa tatgtatgtg cttcaaagcc aaaaactcaa gaaagtgaac tgaaaattag
      421 tgctgtcttt tcagtcagtg acagtcctct tgcacaacag ttgaccccag gctttcagct
      481 ctctcttgca tcatctggcc caaatatatc tcttccttca gttccagccg tagctattca
      541 ggttttttgt tctggttgca aaaaaatgct ttataagggg caaactgcat ttcataagac
      601 aggatctact cagctctttt gctccacaag gtgcatcatc ggatattctt cacctgtctg
      661 cctaccacct cctcccaaga aaacctgtgc aaactgctca aaagacattt taaatccaaa
      721 ggatgtgatc acaacccgat ttgaaaattc ctctcctagc aaagatttct gcagccaatc
      781 atgcctttct tcttatgagc taaagaaaaa acctgttgtt accatatata ccaatagcat
      841 ttcaactagg tgcagtatgt gtcagaagaa tgctgatatt cgatttgaag ttaaatatca
      901 aaatgtggta catggtcttt gtagtgatgc ctgtttttca aaatttcatt ctaccaacaa
      961 ccttaccatg aactgttgtg agaactgtgg aagctattgc tatagtagct ctggtccttg
     1021 ccagtcccag aaggttttta gttcaacaag tatcacagca tataaacaga attcagccca
     1081 aactcctcca tatgccttgg ggaaatcatt gaggccctca gctgaaatga ttgagactac
     1141 gaacgactca ggaaaaacag agcttttctg ctctattaat tgcttatctg cttacagagt
     1201 taagacagtt atttcttcag gtgtccaagt tttctgtcat agttgtaaaa cctcagcagt
     1261 ccctcagtat cacctagcca tgtccaatgg aactatatac agcttctgca gctccagttg
     1321 tgtggtggct ttccagaatg tatttaacaa gccaaaagga acaaactctt cagcagtgcc
     1381 cttgtctcag ggccaagtgg ttgtaagtcc accctctggg tcagcagtgt cagcaggagg
     1441 aggtaacacc tctgccgttt cccccagctc cgtcagtggc tctgccgcag ccaatctcca
     1501 gcctccttct gctcagtccc agcgagttgc tttaacccat acagttgtta aactcaagtg
     1561 tcagcactgt aaccatctgt ttgccacaaa accagaactt cttttctaca agggtaaaat
     1621 gtttctgttt tgtggcaaga tttgctctga tgaatacaaa aagagaaata aagttatggc
     1681 aatgtgtgac tactgtaaac tgcagaaaat tataaaggag actgtacgat tctcaggggt
     1741 tgataagcca ttctgtagtg aagtttgcaa attcctctct gcccgtgact ttggagaacg
     1801 atggggaaac tactgtaaga tgtgcagtta ttgttcacag acatccccta atttggtaga
     1861 aaatcgattg gagggcaagt tagaagagtt ttgttgtgaa gactgcatga ccaaatttac
     1921 tgttctattt tatcagatgg ccaagtgtga tggttgtaaa cgacagggta agctaagtga
     1981 gtccataaaa tggcgaggaa acatcaaaca tttctgtaac ctattttgtg tcatggagtt
     2041 ttgtcatcgt cagcaaatta tgaatgaccc tctgtcacaa aataaagtaa atatttctaa
     2101 ggcacaaact gcttcagtgg agctcccttc tgcaaggaca aatacaatac cagttataac
     2161 caatgtggtg tcattggcaa aaatatctcc tgcccagctc acagagaatg ttgttttaaa
     2221 aggtgcagtt aatactaaag aggcagcaaa gatcattgaa gatggaagta cacagacaga
     2281 tgccatgaaa cttctgtctt cccagtcttt gaagctttta aagaacaaag cattattgtg
     2341 caaacccgtc acacagacca aggccacctc ttgcaaacca catacacaac acaaggaatg
     2401 tcagacagat ttatctatgc ctaacgagaa aaatgatgtg gaacttgatt ctccacctgc
     2461 aaagaaaaaa agaataggtt ttttccagac ttacgatgtg gaatatttaa aagttggttt
     2521 tattatctgt ccgggatcaa aagaaagctc accaaggcca cagtgtgtca tctgtggaga
     2581 aattttatcc agtgaaaaca tgaagccagc aaatctttct catcatttga agacaaagca
     2641 ttcagaatta gaaaacaaac cagtagattt ttttgaacaa aaatctcttg aaatggaatg
     2701 tcaaaacagt gctttaaaaa agtgtttact agttgaaaag tcacttgtga aagcttctta
     2761 tttaattgct ttccaaattg ctgccagcaa aaagccattt tccattgctg aagaagtagt
     2821 taaaccatat ttagtagaaa tgtgttcaga agttttgggt tccagtgctg gagacaaaat
     2881 gaaaaccatt cctctttcta atagtacaat tggacacagg attgatgaac tatctgcaga
     2941 cattgaagat cagctgattc agaaagtcag agagtcaaag tggtttgccc ttcagataga
     3001 tgagtcatta gaaatctcaa ataccaccct tcttttgtgc tatattcgtt tcattgatta
     3061 tggttgtagt gatataaaag aagaattatt atgttgcatt gaaatgcctt ctcagatgac
     3121 tggttttgaa atatttgaac taataaataa atatattgat agtaaatctc tgaactggaa
     3181 gcattgtgtt ggtctctgta cagatggggc tgcaagcatg actggtaggt gttctggttt
     3241 aagggcaaaa attcaagaag ttgccatgaa tacagtggca tttacacatt gttttattca
     3301 ccgtgaacat ttagcagcag aaaagttgtc tccgtgctta catgaaattc ttatgcagtc
     3361 agcacaaatt ttaagtttta taaagagcaa tgcgttgaat tcacgaatgt taacaatttt
     3421 gtgtgaagag atgaggtctg agcacgtgaa tttaccactt catgctgaag tacgttggat
     3481 atcaagaggg agaattttaa caagattatt tgaattacga catgaaattg aaatattttt
     3541 aaatcaaaac cattcagatt tggccaagta tttttttgat gaggaatggg ttgcaaagct
     3601 ggcctactta tcagatattt tttcacttat aaatgaacta aatttaagtc tccaaggatc
     3661 tatgactact ctcttcaatt tgtataataa aatcgatata cttaagaaaa agttaaaaat
     3721 gtggttgaag cgcatgcaag agaatgatta tgacatgttc ccttcatttt ctgaattctc
     3781 aaactcatca ggcttaaata tgagcagtat tgcaagcatt atttttgagc acctggaagg
     3841 actttctcaa atgctcaatg actgttaccc accagaagaa gacttgtgtt caggaaattt
     3901 gtggataatt aatcctttta tgaatcacca aaatagtaat ctcacggact tcgaagagga
     3961 aaaactagca cggttatcgt cagatttagg attacaatca gtatttaaat caatgtctgt
     4021 aactcagttt tggataaatg caaaggcaag ttacccagaa ctccatgaaa aggcactgaa
     4081 atttttattg cctttttcaa ctatttattt atgtgatgct acattttcag ctttgactga
     4141 gtcaaaacaa agaaatctgt tggtttctgg ccctgcccta cgacttgcag tcacatcttt
     4201 cattccgagg atagaaaaat tagtaaagga gaaagaatag taatgtgcat attgcttatt
     4261 atcaaagtct atacttttgt gttaaatttt gtatgagata agtatcctaa aatataaatt
     4321 cctaatgtgg atgtgtgttc tcggtgat
//
LOCUS       XM_032645706            4472 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X5, mRNA.
ACCESSION   XM_032645706
VERSION     XM_032645706.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4472
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4472
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760592"
     CDS             321..4364
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X1"
                     /protein_id="XP_032501597.1"
                     /db_xref="GeneID:116760592"
                     /translation="MVNVAKQWHRSGGFWTKLKKNLTMLKQCHSRTGMSSRCCLVHPL
                     HAFLKCCAAKGSEEYVCASKPKTQESELKISAVFSVSDSPLAQQLTPGFQLSLASSGP
                     NISLPSVPAVAIQVFCSGCKKMLYKGQTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPP
                     KKTCANCSKDILNPKDVITTRFENSSPSKDFCSQSCLSSYELKKKPVVTIYTNSISTR
                     CSMCQKNADIRFEVKYQNVVHGLCSDACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQ
                     SQKVFSSTSITAYKQNSAQTPPYALGKSLRPSAEMIETTNDSGKTELFCSINCLSAYR
                     VKTVISSGVQVFCHSCKTSAVPQYHLAMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSS
                     AVPLSQGQVVVSPPSGSAVSAGGGNTSAVSPSSVSGSAAANLQPPSAQSQRVALTHTV
                     VKLKCQHCNHLFATKPELLFYKGKMFLFCGKICSDEYKKRNKVMAMCDYCKLQKIIKE
                     TVRFSGVDKPFCSEVCKFLSARDFGERWGNYCKMCSYCSQTSPNLVENRLEGKLEEFC
                     CEDCMTKFTVLFYQMAKCDGCKRQGKLSESIKWRGNIKHFCNLFCVMEFCHRQQIMND
                     PLSQNKVNISKAQTASVELPSARTNTIPVITNVVSLAKISPAQLTENVVLKGAVNTKE
                     AAKIIEDGSTQTDAMKLLSSQSLKLLKNKALLCKPVTQTKATSCKPHTQHKECQTDLS
                     MPNEKNDVELDSPPAKKKRIGFFQTYDVEYLKVGFIICPGSKESSPRPQCVICGEILS
                     SENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSALKKCLLVEKSLVKASYL
                     IAFQIAASKKPFSIAEEVVKPYLVEMCSEVLGSSAGDKMKTIPLSNSTIGHRIDELSA
                     DIEDQLIQKVRESKWFALQIDESLEISNTTLLLCYIRFIDYGCSDIKEELLCCIEMPS
                     QMTGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGRCSGLRAKIQEVAMNTVAFT
                     HCFIHREHLAAEKLSPCLHEILMQSAQILSFIKSNALNSRMLTILCEEMRSEHVNLPL
                     HAEVRWISRGRILTRLFELRHEIEIFLNQNHSDLAKYFFDEEWVAKLAYLSDIFSLIN
                     ELNLSLQGSMTTLFNLYNKIDILKKKLKMWLKRMQENDYDMFPSFSEFSNSSGLNMSS
                     IASIIFEHLEGLSQMLNDCYPPEEDLCSGNLWIINPFMNHQNSNLTDFEEEKLARLSS
                     DLGLQSVFKSMSVTQFWINAKASYPELHEKALKFLLPFSTIYLCDATFSALTESKQRN
                     LLVSGPALRLAVTSFIPRIEKLVKEKE"
     misc_feature    798..920
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <3003..3362
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 taaattctca tctctcgcac tggttattaa gccagttgcc catttccatg tctggcttgc
       61 ctgtttgggt aaagacaact ttggagagtt tcctttttgc ttcaggtgta ctacgtcctg
      121 tttaggggaa gggaagtccg ctgaatgact aatcttgttt acaagaagga gtttgggaag
      181 cggatctcag aggggctcat tcctgagacc ctgcaggtgg tccactttaa gaatccaact
      241 atctatcacc aagaagaaat ctattagttt tagaccgggg aattccttta cctaaaaaat
      301 tagaatgaaa gaacctttgg atggtgaatg tggcaaagca atggcaccgc agcgggggct
      361 tctggacaaa attaaagaag aacctgacaa tgctcaagca gtgtcattcc aggacaggga
      421 tgtcaagtag atgttgtctt gttcatccac tccacgcctt cctaaaatgc tgtgctgcga
      481 agggttctga ggaatatgta tgtgcttcaa agccaaaaac tcaagaaagt gaactgaaaa
      541 ttagtgctgt cttttcagtc agtgacagtc ctcttgcaca acagttgacc ccaggctttc
      601 agctctctct tgcatcatct ggcccaaata tatctcttcc ttcagttcca gccgtagcta
      661 ttcaggtttt ttgttctggt tgcaaaaaaa tgctttataa ggggcaaact gcatttcata
      721 agacaggatc tactcagctc ttttgctcca caaggtgcat catcggatat tcttcacctg
      781 tctgcctacc acctcctccc aagaaaacct gtgcaaactg ctcaaaagac attttaaatc
      841 caaaggatgt gatcacaacc cgatttgaaa attcctctcc tagcaaagat ttctgcagcc
      901 aatcatgcct ttcttcttat gagctaaaga aaaaacctgt tgttaccata tataccaata
      961 gcatttcaac taggtgcagt atgtgtcaga agaatgctga tattcgattt gaagttaaat
     1021 atcaaaatgt ggtacatggt ctttgtagtg atgcctgttt ttcaaaattt cattctacca
     1081 acaaccttac catgaactgt tgtgagaact gtggaagcta ttgctatagt agctctggtc
     1141 cttgccagtc ccagaaggtt tttagttcaa caagtatcac agcatataaa cagaattcag
     1201 cccaaactcc tccatatgcc ttggggaaat cattgaggcc ctcagctgaa atgattgaga
     1261 ctacgaacga ctcaggaaaa acagagcttt tctgctctat taattgctta tctgcttaca
     1321 gagttaagac agttatttct tcaggtgtcc aagttttctg tcatagttgt aaaacctcag
     1381 cagtccctca gtatcaccta gccatgtcca atggaactat atacagcttc tgcagctcca
     1441 gttgtgtggt ggctttccag aatgtattta acaagccaaa aggaacaaac tcttcagcag
     1501 tgcccttgtc tcagggccaa gtggttgtaa gtccaccctc tgggtcagca gtgtcagcag
     1561 gaggaggtaa cacctctgcc gtttccccca gctccgtcag tggctctgcc gcagccaatc
     1621 tccagcctcc ttctgctcag tcccagcgag ttgctttaac ccatacagtt gttaaactca
     1681 agtgtcagca ctgtaaccat ctgtttgcca caaaaccaga acttcttttc tacaagggta
     1741 aaatgtttct gttttgtggc aagatttgct ctgatgaata caaaaagaga aataaagtta
     1801 tggcaatgtg tgactactgt aaactgcaga aaattataaa ggagactgta cgattctcag
     1861 gggttgataa gccattctgt agtgaagttt gcaaattcct ctctgcccgt gactttggag
     1921 aacgatgggg aaactactgt aagatgtgca gttattgttc acagacatcc cctaatttgg
     1981 tagaaaatcg attggagggc aagttagaag agttttgttg tgaagactgc atgaccaaat
     2041 ttactgttct attttatcag atggccaagt gtgatggttg taaacgacag ggtaagctaa
     2101 gtgagtccat aaaatggcga ggaaacatca aacatttctg taacctattt tgtgtcatgg
     2161 agttttgtca tcgtcagcaa attatgaatg accctctgtc acaaaataaa gtaaatattt
     2221 ctaaggcaca aactgcttca gtggagctcc cttctgcaag gacaaataca ataccagtta
     2281 taaccaatgt ggtgtcattg gcaaaaatat ctcctgccca gctcacagag aatgttgttt
     2341 taaaaggtgc agttaatact aaagaggcag caaagatcat tgaagatgga agtacacaga
     2401 cagatgccat gaaacttctg tcttcccagt ctttgaagct tttaaagaac aaagcattat
     2461 tgtgcaaacc cgtcacacag accaaggcca cctcttgcaa accacataca caacacaagg
     2521 aatgtcagac agatttatct atgcctaacg agaaaaatga tgtggaactt gattctccac
     2581 ctgcaaagaa aaaaagaata ggttttttcc agacttacga tgtggaatat ttaaaagttg
     2641 gttttattat ctgtccggga tcaaaagaaa gctcaccaag gccacagtgt gtcatctgtg
     2701 gagaaatttt atccagtgaa aacatgaagc cagcaaatct ttctcatcat ttgaagacaa
     2761 agcattcaga attagaaaac aaaccagtag atttttttga acaaaaatct cttgaaatgg
     2821 aatgtcaaaa cagtgcttta aaaaagtgtt tactagttga aaagtcactt gtgaaagctt
     2881 cttatttaat tgctttccaa attgctgcca gcaaaaagcc attttccatt gctgaagaag
     2941 tagttaaacc atatttagta gaaatgtgtt cagaagtttt gggttccagt gctggagaca
     3001 aaatgaaaac cattcctctt tctaatagta caattggaca caggattgat gaactatctg
     3061 cagacattga agatcagctg attcagaaag tcagagagtc aaagtggttt gcccttcaga
     3121 tagatgagtc attagaaatc tcaaatacca cccttctttt gtgctatatt cgtttcattg
     3181 attatggttg tagtgatata aaagaagaat tattatgttg cattgaaatg ccttctcaga
     3241 tgactggttt tgaaatattt gaactaataa ataaatatat tgatagtaaa tctctgaact
     3301 ggaagcattg tgttggtctc tgtacagatg gggctgcaag catgactggt aggtgttctg
     3361 gtttaagggc aaaaattcaa gaagttgcca tgaatacagt ggcatttaca cattgtttta
     3421 ttcaccgtga acatttagca gcagaaaagt tgtctccgtg cttacatgaa attcttatgc
     3481 agtcagcaca aattttaagt tttataaaga gcaatgcgtt gaattcacga atgttaacaa
     3541 ttttgtgtga agagatgagg tctgagcacg tgaatttacc acttcatgct gaagtacgtt
     3601 ggatatcaag agggagaatt ttaacaagat tatttgaatt acgacatgaa attgaaatat
     3661 ttttaaatca aaaccattca gatttggcca agtatttttt tgatgaggaa tgggttgcaa
     3721 agctggccta cttatcagat attttttcac ttataaatga actaaattta agtctccaag
     3781 gatctatgac tactctcttc aatttgtata ataaaatcga tatacttaag aaaaagttaa
     3841 aaatgtggtt gaagcgcatg caagagaatg attatgacat gttcccttca ttttctgaat
     3901 tctcaaactc atcaggctta aatatgagca gtattgcaag cattattttt gagcacctgg
     3961 aaggactttc tcaaatgctc aatgactgtt acccaccaga agaagacttg tgttcaggaa
     4021 atttgtggat aattaatcct tttatgaatc accaaaatag taatctcacg gacttcgaag
     4081 aggaaaaact agcacggtta tcgtcagatt taggattaca atcagtattt aaatcaatgt
     4141 ctgtaactca gttttggata aatgcaaagg caagttaccc agaactccat gaaaaggcac
     4201 tgaaattttt attgcctttt tcaactattt atttatgtga tgctacattt tcagctttga
     4261 ctgagtcaaa acaaagaaat ctgttggttt ctggccctgc cctacgactt gcagtcacat
     4321 ctttcattcc gaggatagaa aaattagtaa aggagaaaga atagtaatgt gcatattgct
     4381 tattatcaaa gtctatactt ttgtgttaaa ttttgtatga gataagtatc ctaaaatata
     4441 aattcctaat gtggatgtgt gttctcggtg at
//
LOCUS       XM_032645715            4293 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X6, mRNA.
ACCESSION   XM_032645715
VERSION     XM_032645715.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4293
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4293
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760592"
     CDS             142..4185
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X1"
                     /protein_id="XP_032501606.1"
                     /db_xref="GeneID:116760592"
                     /translation="MVNVAKQWHRSGGFWTKLKKNLTMLKQCHSRTGMSSRCCLVHPL
                     HAFLKCCAAKGSEEYVCASKPKTQESELKISAVFSVSDSPLAQQLTPGFQLSLASSGP
                     NISLPSVPAVAIQVFCSGCKKMLYKGQTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPP
                     KKTCANCSKDILNPKDVITTRFENSSPSKDFCSQSCLSSYELKKKPVVTIYTNSISTR
                     CSMCQKNADIRFEVKYQNVVHGLCSDACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQ
                     SQKVFSSTSITAYKQNSAQTPPYALGKSLRPSAEMIETTNDSGKTELFCSINCLSAYR
                     VKTVISSGVQVFCHSCKTSAVPQYHLAMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSS
                     AVPLSQGQVVVSPPSGSAVSAGGGNTSAVSPSSVSGSAAANLQPPSAQSQRVALTHTV
                     VKLKCQHCNHLFATKPELLFYKGKMFLFCGKICSDEYKKRNKVMAMCDYCKLQKIIKE
                     TVRFSGVDKPFCSEVCKFLSARDFGERWGNYCKMCSYCSQTSPNLVENRLEGKLEEFC
                     CEDCMTKFTVLFYQMAKCDGCKRQGKLSESIKWRGNIKHFCNLFCVMEFCHRQQIMND
                     PLSQNKVNISKAQTASVELPSARTNTIPVITNVVSLAKISPAQLTENVVLKGAVNTKE
                     AAKIIEDGSTQTDAMKLLSSQSLKLLKNKALLCKPVTQTKATSCKPHTQHKECQTDLS
                     MPNEKNDVELDSPPAKKKRIGFFQTYDVEYLKVGFIICPGSKESSPRPQCVICGEILS
                     SENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSALKKCLLVEKSLVKASYL
                     IAFQIAASKKPFSIAEEVVKPYLVEMCSEVLGSSAGDKMKTIPLSNSTIGHRIDELSA
                     DIEDQLIQKVRESKWFALQIDESLEISNTTLLLCYIRFIDYGCSDIKEELLCCIEMPS
                     QMTGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGRCSGLRAKIQEVAMNTVAFT
                     HCFIHREHLAAEKLSPCLHEILMQSAQILSFIKSNALNSRMLTILCEEMRSEHVNLPL
                     HAEVRWISRGRILTRLFELRHEIEIFLNQNHSDLAKYFFDEEWVAKLAYLSDIFSLIN
                     ELNLSLQGSMTTLFNLYNKIDILKKKLKMWLKRMQENDYDMFPSFSEFSNSSGLNMSS
                     IASIIFEHLEGLSQMLNDCYPPEEDLCSGNLWIINPFMNHQNSNLTDFEEEKLARLSS
                     DLGLQSVFKSMSVTQFWINAKASYPELHEKALKFLLPFSTIYLCDATFSALTESKQRN
                     LLVSGPALRLAVTSFIPRIEKLVKEKE"
     misc_feature    619..741
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2824..3183
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 ctgacaggca tttgcgggtc gcgttttctc caaaagatac aacgttgctg cgaatccaac
       61 tatctatcac caagaagaaa tctattagtt ttagaccggg gaattccttt acctaaaaaa
      121 ttagaatgaa agaacctttg gatggtgaat gtggcaaagc aatggcaccg cagcgggggc
      181 ttctggacaa aattaaagaa gaacctgaca atgctcaagc agtgtcattc caggacaggg
      241 atgtcaagta gatgttgtct tgttcatcca ctccacgcct tcctaaaatg ctgtgctgcg
      301 aagggttctg aggaatatgt atgtgcttca aagccaaaaa ctcaagaaag tgaactgaaa
      361 attagtgctg tcttttcagt cagtgacagt cctcttgcac aacagttgac cccaggcttt
      421 cagctctctc ttgcatcatc tggcccaaat atatctcttc cttcagttcc agccgtagct
      481 attcaggttt tttgttctgg ttgcaaaaaa atgctttata aggggcaaac tgcatttcat
      541 aagacaggat ctactcagct cttttgctcc acaaggtgca tcatcggata ttcttcacct
      601 gtctgcctac cacctcctcc caagaaaacc tgtgcaaact gctcaaaaga cattttaaat
      661 ccaaaggatg tgatcacaac ccgatttgaa aattcctctc ctagcaaaga tttctgcagc
      721 caatcatgcc tttcttctta tgagctaaag aaaaaacctg ttgttaccat atataccaat
      781 agcatttcaa ctaggtgcag tatgtgtcag aagaatgctg atattcgatt tgaagttaaa
      841 tatcaaaatg tggtacatgg tctttgtagt gatgcctgtt tttcaaaatt tcattctacc
      901 aacaacctta ccatgaactg ttgtgagaac tgtggaagct attgctatag tagctctggt
      961 ccttgccagt cccagaaggt ttttagttca acaagtatca cagcatataa acagaattca
     1021 gcccaaactc ctccatatgc cttggggaaa tcattgaggc cctcagctga aatgattgag
     1081 actacgaacg actcaggaaa aacagagctt ttctgctcta ttaattgctt atctgcttac
     1141 agagttaaga cagttatttc ttcaggtgtc caagttttct gtcatagttg taaaacctca
     1201 gcagtccctc agtatcacct agccatgtcc aatggaacta tatacagctt ctgcagctcc
     1261 agttgtgtgg tggctttcca gaatgtattt aacaagccaa aaggaacaaa ctcttcagca
     1321 gtgcccttgt ctcagggcca agtggttgta agtccaccct ctgggtcagc agtgtcagca
     1381 ggaggaggta acacctctgc cgtttccccc agctccgtca gtggctctgc cgcagccaat
     1441 ctccagcctc cttctgctca gtcccagcga gttgctttaa cccatacagt tgttaaactc
     1501 aagtgtcagc actgtaacca tctgtttgcc acaaaaccag aacttctttt ctacaagggt
     1561 aaaatgtttc tgttttgtgg caagatttgc tctgatgaat acaaaaagag aaataaagtt
     1621 atggcaatgt gtgactactg taaactgcag aaaattataa aggagactgt acgattctca
     1681 ggggttgata agccattctg tagtgaagtt tgcaaattcc tctctgcccg tgactttgga
     1741 gaacgatggg gaaactactg taagatgtgc agttattgtt cacagacatc ccctaatttg
     1801 gtagaaaatc gattggaggg caagttagaa gagttttgtt gtgaagactg catgaccaaa
     1861 tttactgttc tattttatca gatggccaag tgtgatggtt gtaaacgaca gggtaagcta
     1921 agtgagtcca taaaatggcg aggaaacatc aaacatttct gtaacctatt ttgtgtcatg
     1981 gagttttgtc atcgtcagca aattatgaat gaccctctgt cacaaaataa agtaaatatt
     2041 tctaaggcac aaactgcttc agtggagctc ccttctgcaa ggacaaatac aataccagtt
     2101 ataaccaatg tggtgtcatt ggcaaaaata tctcctgccc agctcacaga gaatgttgtt
     2161 ttaaaaggtg cagttaatac taaagaggca gcaaagatca ttgaagatgg aagtacacag
     2221 acagatgcca tgaaacttct gtcttcccag tctttgaagc ttttaaagaa caaagcatta
     2281 ttgtgcaaac ccgtcacaca gaccaaggcc acctcttgca aaccacatac acaacacaag
     2341 gaatgtcaga cagatttatc tatgcctaac gagaaaaatg atgtggaact tgattctcca
     2401 cctgcaaaga aaaaaagaat aggttttttc cagacttacg atgtggaata tttaaaagtt
     2461 ggttttatta tctgtccggg atcaaaagaa agctcaccaa ggccacagtg tgtcatctgt
     2521 ggagaaattt tatccagtga aaacatgaag ccagcaaatc tttctcatca tttgaagaca
     2581 aagcattcag aattagaaaa caaaccagta gatttttttg aacaaaaatc tcttgaaatg
     2641 gaatgtcaaa acagtgcttt aaaaaagtgt ttactagttg aaaagtcact tgtgaaagct
     2701 tcttatttaa ttgctttcca aattgctgcc agcaaaaagc cattttccat tgctgaagaa
     2761 gtagttaaac catatttagt agaaatgtgt tcagaagttt tgggttccag tgctggagac
     2821 aaaatgaaaa ccattcctct ttctaatagt acaattggac acaggattga tgaactatct
     2881 gcagacattg aagatcagct gattcagaaa gtcagagagt caaagtggtt tgcccttcag
     2941 atagatgagt cattagaaat ctcaaatacc acccttcttt tgtgctatat tcgtttcatt
     3001 gattatggtt gtagtgatat aaaagaagaa ttattatgtt gcattgaaat gccttctcag
     3061 atgactggtt ttgaaatatt tgaactaata aataaatata ttgatagtaa atctctgaac
     3121 tggaagcatt gtgttggtct ctgtacagat ggggctgcaa gcatgactgg taggtgttct
     3181 ggtttaaggg caaaaattca agaagttgcc atgaatacag tggcatttac acattgtttt
     3241 attcaccgtg aacatttagc agcagaaaag ttgtctccgt gcttacatga aattcttatg
     3301 cagtcagcac aaattttaag ttttataaag agcaatgcgt tgaattcacg aatgttaaca
     3361 attttgtgtg aagagatgag gtctgagcac gtgaatttac cacttcatgc tgaagtacgt
     3421 tggatatcaa gagggagaat tttaacaaga ttatttgaat tacgacatga aattgaaata
     3481 tttttaaatc aaaaccattc agatttggcc aagtattttt ttgatgagga atgggttgca
     3541 aagctggcct acttatcaga tattttttca cttataaatg aactaaattt aagtctccaa
     3601 ggatctatga ctactctctt caatttgtat aataaaatcg atatacttaa gaaaaagtta
     3661 aaaatgtggt tgaagcgcat gcaagagaat gattatgaca tgttcccttc attttctgaa
     3721 ttctcaaact catcaggctt aaatatgagc agtattgcaa gcattatttt tgagcacctg
     3781 gaaggacttt ctcaaatgct caatgactgt tacccaccag aagaagactt gtgttcagga
     3841 aatttgtgga taattaatcc ttttatgaat caccaaaata gtaatctcac ggacttcgaa
     3901 gaggaaaaac tagcacggtt atcgtcagat ttaggattac aatcagtatt taaatcaatg
     3961 tctgtaactc agttttggat aaatgcaaag gcaagttacc cagaactcca tgaaaaggca
     4021 ctgaaatttt tattgccttt ttcaactatt tatttatgtg atgctacatt ttcagctttg
     4081 actgagtcaa aacaaagaaa tctgttggtt tctggccctg ccctacgact tgcagtcaca
     4141 tctttcattc cgaggataga aaaattagta aaggagaaag aatagtaatg tgcatattgc
     4201 ttattatcaa agtctatact tttgtgttaa attttgtatg agataagtat cctaaaatat
     4261 aaattcctaa tgtggatgtg tgttctcggt gat
//
LOCUS       XM_032645725            4333 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X7, mRNA.
ACCESSION   XM_032645725
VERSION     XM_032645725.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4333
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4333
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760592"
     CDS             260..4225
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X2"
                     /protein_id="XP_032501616.1"
                     /db_xref="GeneID:116760592"
                     /translation="MKEPLDGECGKAMAPQRGLLDKIKEEPDNAQEYVCASKPKTQES
                     ELKISAVFSVSDSPLAQQLTPGFQLSLASSGPNISLPSVPAVAIQVFCSGCKKMLYKG
                     QTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPPKKTCANCSKDILNPKDVITTRFENSS
                     PSKDFCSQSCLSSYELKKKPVVTIYTNSISTRCSMCQKNADIRFEVKYQNVVHGLCSD
                     ACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQSQKVFSSTSITAYKQNSAQTPPYALG
                     KSLRPSAEMIETTNDSGKTELFCSINCLSAYRVKTVISSGVQVFCHSCKTSAVPQYHL
                     AMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSSAVPLSQGQVVVSPPSGSAVSAGGGNT
                     SAVSPSSVSGSAAANLQPPSAQSQRVALTHTVVKLKCQHCNHLFATKPELLFYKGKMF
                     LFCGKICSDEYKKRNKVMAMCDYCKLQKIIKETVRFSGVDKPFCSEVCKFLSARDFGE
                     RWGNYCKMCSYCSQTSPNLVENRLEGKLEEFCCEDCMTKFTVLFYQMAKCDGCKRQGK
                     LSESIKWRGNIKHFCNLFCVMEFCHRQQIMNDPLSQNKVNISKAQTASVELPSARTNT
                     IPVITNVVSLAKISPAQLTENVVLKGAVNTKEAAKIIEDGSTQTDAMKLLSSQSLKLL
                     KNKALLCKPVTQTKATSCKPHTQHKECQTDLSMPNEKNDVELDSPPAKKKRIGFFQTY
                     DVEYLKVGFIICPGSKESSPRPQCVICGEILSSENMKPANLSHHLKTKHSELENKPVD
                     FFEQKSLEMECQNSALKKCLLVEKSLVKASYLIAFQIAASKKPFSIAEEVVKPYLVEM
                     CSEVLGSSAGDKMKTIPLSNSTIGHRIDELSADIEDQLIQKVRESKWFALQIDESLEI
                     SNTTLLLCYIRFIDYGCSDIKEELLCCIEMPSQMTGFEIFELINKYIDSKSLNWKHCV
                     GLCTDGAASMTGRCSGLRAKIQEVAMNTVAFTHCFIHREHLAAEKLSPCLHEILMQSA
                     QILSFIKSNALNSRMLTILCEEMRSEHVNLPLHAEVRWISRGRILTRLFELRHEIEIF
                     LNQNHSDLAKYFFDEEWVAKLAYLSDIFSLINELNLSLQGSMTTLFNLYNKIDILKKK
                     LKMWLKRMQENDYDMFPSFSEFSNSSGLNMSSIASIIFEHLEGLSQMLNDCYPPEEDL
                     CSGNLWIINPFMNHQNSNLTDFEEEKLARLSSDLGLQSVFKSMSVTQFWINAKASYPE
                     LHEKALKFLLPFSTIYLCDATFSALTESKQRNLLVSGPALRLAVTSFIPRIEKLVKEK
                     E"
     misc_feature    659..781
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2864..3223
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 gcgcagtcgg gcgttgcggt ttcgctgcag gaacacgctg acaggcattt gcgggtcgcg
       61 ttttctccaa aagatacaac gttgctgcgt ttgtaccctg tgacaggcgt gggaattatt
      121 ggtggggacg agattttggg agcgattacg acaagagagc ccatagattg ttgtaactgt
      181 ggcaggaatc caactatcta tcaccaagaa gaaatctatt agttttagac cggggaattc
      241 ctttacctaa aaaattagaa tgaaagaacc tttggatggt gaatgtggca aagcaatggc
      301 accgcagcgg gggcttctgg acaaaattaa agaagaacct gacaatgctc aagaatatgt
      361 atgtgcttca aagccaaaaa ctcaagaaag tgaactgaaa attagtgctg tcttttcagt
      421 cagtgacagt cctcttgcac aacagttgac cccaggcttt cagctctctc ttgcatcatc
      481 tggcccaaat atatctcttc cttcagttcc agccgtagct attcaggttt tttgttctgg
      541 ttgcaaaaaa atgctttata aggggcaaac tgcatttcat aagacaggat ctactcagct
      601 cttttgctcc acaaggtgca tcatcggata ttcttcacct gtctgcctac cacctcctcc
      661 caagaaaacc tgtgcaaact gctcaaaaga cattttaaat ccaaaggatg tgatcacaac
      721 ccgatttgaa aattcctctc ctagcaaaga tttctgcagc caatcatgcc tttcttctta
      781 tgagctaaag aaaaaacctg ttgttaccat atataccaat agcatttcaa ctaggtgcag
      841 tatgtgtcag aagaatgctg atattcgatt tgaagttaaa tatcaaaatg tggtacatgg
      901 tctttgtagt gatgcctgtt tttcaaaatt tcattctacc aacaacctta ccatgaactg
      961 ttgtgagaac tgtggaagct attgctatag tagctctggt ccttgccagt cccagaaggt
     1021 ttttagttca acaagtatca cagcatataa acagaattca gcccaaactc ctccatatgc
     1081 cttggggaaa tcattgaggc cctcagctga aatgattgag actacgaacg actcaggaaa
     1141 aacagagctt ttctgctcta ttaattgctt atctgcttac agagttaaga cagttatttc
     1201 ttcaggtgtc caagttttct gtcatagttg taaaacctca gcagtccctc agtatcacct
     1261 agccatgtcc aatggaacta tatacagctt ctgcagctcc agttgtgtgg tggctttcca
     1321 gaatgtattt aacaagccaa aaggaacaaa ctcttcagca gtgcccttgt ctcagggcca
     1381 agtggttgta agtccaccct ctgggtcagc agtgtcagca ggaggaggta acacctctgc
     1441 cgtttccccc agctccgtca gtggctctgc cgcagccaat ctccagcctc cttctgctca
     1501 gtcccagcga gttgctttaa cccatacagt tgttaaactc aagtgtcagc actgtaacca
     1561 tctgtttgcc acaaaaccag aacttctttt ctacaagggt aaaatgtttc tgttttgtgg
     1621 caagatttgc tctgatgaat acaaaaagag aaataaagtt atggcaatgt gtgactactg
     1681 taaactgcag aaaattataa aggagactgt acgattctca ggggttgata agccattctg
     1741 tagtgaagtt tgcaaattcc tctctgcccg tgactttgga gaacgatggg gaaactactg
     1801 taagatgtgc agttattgtt cacagacatc ccctaatttg gtagaaaatc gattggaggg
     1861 caagttagaa gagttttgtt gtgaagactg catgaccaaa tttactgttc tattttatca
     1921 gatggccaag tgtgatggtt gtaaacgaca gggtaagcta agtgagtcca taaaatggcg
     1981 aggaaacatc aaacatttct gtaacctatt ttgtgtcatg gagttttgtc atcgtcagca
     2041 aattatgaat gaccctctgt cacaaaataa agtaaatatt tctaaggcac aaactgcttc
     2101 agtggagctc ccttctgcaa ggacaaatac aataccagtt ataaccaatg tggtgtcatt
     2161 ggcaaaaata tctcctgccc agctcacaga gaatgttgtt ttaaaaggtg cagttaatac
     2221 taaagaggca gcaaagatca ttgaagatgg aagtacacag acagatgcca tgaaacttct
     2281 gtcttcccag tctttgaagc ttttaaagaa caaagcatta ttgtgcaaac ccgtcacaca
     2341 gaccaaggcc acctcttgca aaccacatac acaacacaag gaatgtcaga cagatttatc
     2401 tatgcctaac gagaaaaatg atgtggaact tgattctcca cctgcaaaga aaaaaagaat
     2461 aggttttttc cagacttacg atgtggaata tttaaaagtt ggttttatta tctgtccggg
     2521 atcaaaagaa agctcaccaa ggccacagtg tgtcatctgt ggagaaattt tatccagtga
     2581 aaacatgaag ccagcaaatc tttctcatca tttgaagaca aagcattcag aattagaaaa
     2641 caaaccagta gatttttttg aacaaaaatc tcttgaaatg gaatgtcaaa acagtgcttt
     2701 aaaaaagtgt ttactagttg aaaagtcact tgtgaaagct tcttatttaa ttgctttcca
     2761 aattgctgcc agcaaaaagc cattttccat tgctgaagaa gtagttaaac catatttagt
     2821 agaaatgtgt tcagaagttt tgggttccag tgctggagac aaaatgaaaa ccattcctct
     2881 ttctaatagt acaattggac acaggattga tgaactatct gcagacattg aagatcagct
     2941 gattcagaaa gtcagagagt caaagtggtt tgcccttcag atagatgagt cattagaaat
     3001 ctcaaatacc acccttcttt tgtgctatat tcgtttcatt gattatggtt gtagtgatat
     3061 aaaagaagaa ttattatgtt gcattgaaat gccttctcag atgactggtt ttgaaatatt
     3121 tgaactaata aataaatata ttgatagtaa atctctgaac tggaagcatt gtgttggtct
     3181 ctgtacagat ggggctgcaa gcatgactgg taggtgttct ggtttaaggg caaaaattca
     3241 agaagttgcc atgaatacag tggcatttac acattgtttt attcaccgtg aacatttagc
     3301 agcagaaaag ttgtctccgt gcttacatga aattcttatg cagtcagcac aaattttaag
     3361 ttttataaag agcaatgcgt tgaattcacg aatgttaaca attttgtgtg aagagatgag
     3421 gtctgagcac gtgaatttac cacttcatgc tgaagtacgt tggatatcaa gagggagaat
     3481 tttaacaaga ttatttgaat tacgacatga aattgaaata tttttaaatc aaaaccattc
     3541 agatttggcc aagtattttt ttgatgagga atgggttgca aagctggcct acttatcaga
     3601 tattttttca cttataaatg aactaaattt aagtctccaa ggatctatga ctactctctt
     3661 caatttgtat aataaaatcg atatacttaa gaaaaagtta aaaatgtggt tgaagcgcat
     3721 gcaagagaat gattatgaca tgttcccttc attttctgaa ttctcaaact catcaggctt
     3781 aaatatgagc agtattgcaa gcattatttt tgagcacctg gaaggacttt ctcaaatgct
     3841 caatgactgt tacccaccag aagaagactt gtgttcagga aatttgtgga taattaatcc
     3901 ttttatgaat caccaaaata gtaatctcac ggacttcgaa gaggaaaaac tagcacggtt
     3961 atcgtcagat ttaggattac aatcagtatt taaatcaatg tctgtaactc agttttggat
     4021 aaatgcaaag gcaagttacc cagaactcca tgaaaaggca ctgaaatttt tattgccttt
     4081 ttcaactatt tatttatgtg atgctacatt ttcagctttg actgagtcaa aacaaagaaa
     4141 tctgttggtt tctggccctg ccctacgact tgcagtcaca tctttcattc cgaggataga
     4201 aaaattagta aaggagaaag aatagtaatg tgcatattgc ttattatcaa agtctatact
     4261 tttgtgttaa attttgtatg agataagtat cctaaaatat aaattcctaa tgtggatgtg
     4321 tgttctcggt gat
//
LOCUS       XM_032645735            4284 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X8, mRNA.
ACCESSION   XM_032645735
VERSION     XM_032645735.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4284
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760592"
     CDS             211..4176
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X2"
                     /protein_id="XP_032501626.1"
                     /db_xref="GeneID:116760592"
                     /translation="MKEPLDGECGKAMAPQRGLLDKIKEEPDNAQEYVCASKPKTQES
                     ELKISAVFSVSDSPLAQQLTPGFQLSLASSGPNISLPSVPAVAIQVFCSGCKKMLYKG
                     QTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPPKKTCANCSKDILNPKDVITTRFENSS
                     PSKDFCSQSCLSSYELKKKPVVTIYTNSISTRCSMCQKNADIRFEVKYQNVVHGLCSD
                     ACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQSQKVFSSTSITAYKQNSAQTPPYALG
                     KSLRPSAEMIETTNDSGKTELFCSINCLSAYRVKTVISSGVQVFCHSCKTSAVPQYHL
                     AMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSSAVPLSQGQVVVSPPSGSAVSAGGGNT
                     SAVSPSSVSGSAAANLQPPSAQSQRVALTHTVVKLKCQHCNHLFATKPELLFYKGKMF
                     LFCGKICSDEYKKRNKVMAMCDYCKLQKIIKETVRFSGVDKPFCSEVCKFLSARDFGE
                     RWGNYCKMCSYCSQTSPNLVENRLEGKLEEFCCEDCMTKFTVLFYQMAKCDGCKRQGK
                     LSESIKWRGNIKHFCNLFCVMEFCHRQQIMNDPLSQNKVNISKAQTASVELPSARTNT
                     IPVITNVVSLAKISPAQLTENVVLKGAVNTKEAAKIIEDGSTQTDAMKLLSSQSLKLL
                     KNKALLCKPVTQTKATSCKPHTQHKECQTDLSMPNEKNDVELDSPPAKKKRIGFFQTY
                     DVEYLKVGFIICPGSKESSPRPQCVICGEILSSENMKPANLSHHLKTKHSELENKPVD
                     FFEQKSLEMECQNSALKKCLLVEKSLVKASYLIAFQIAASKKPFSIAEEVVKPYLVEM
                     CSEVLGSSAGDKMKTIPLSNSTIGHRIDELSADIEDQLIQKVRESKWFALQIDESLEI
                     SNTTLLLCYIRFIDYGCSDIKEELLCCIEMPSQMTGFEIFELINKYIDSKSLNWKHCV
                     GLCTDGAASMTGRCSGLRAKIQEVAMNTVAFTHCFIHREHLAAEKLSPCLHEILMQSA
                     QILSFIKSNALNSRMLTILCEEMRSEHVNLPLHAEVRWISRGRILTRLFELRHEIEIF
                     LNQNHSDLAKYFFDEEWVAKLAYLSDIFSLINELNLSLQGSMTTLFNLYNKIDILKKK
                     LKMWLKRMQENDYDMFPSFSEFSNSSGLNMSSIASIIFEHLEGLSQMLNDCYPPEEDL
                     CSGNLWIINPFMNHQNSNLTDFEEEKLARLSSDLGLQSVFKSMSVTQFWINAKASYPE
                     LHEKALKFLLPFSTIYLCDATFSALTESKQRNLLVSGPALRLAVTSFIPRIEKLVKEK
                     E"
     misc_feature    610..732
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2815..3174
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 gcgcagttgt ccgggtgttg cgttgcgatg gattaggcgg aaaaattccc gtaagagaaa
       61 ataatcttcg tcccagggtg ggggccttgg gttctactcc cccttccccg gtcggtgctc
      121 cccgggagca gggaaggaat ccaactatct atcaccaaga agaaatctat tagttttaga
      181 ccggggaatt cctttaccta aaaaattaga atgaaagaac ctttggatgg tgaatgtggc
      241 aaagcaatgg caccgcagcg ggggcttctg gacaaaatta aagaagaacc tgacaatgct
      301 caagaatatg tatgtgcttc aaagccaaaa actcaagaaa gtgaactgaa aattagtgct
      361 gtcttttcag tcagtgacag tcctcttgca caacagttga ccccaggctt tcagctctct
      421 cttgcatcat ctggcccaaa tatatctctt ccttcagttc cagccgtagc tattcaggtt
      481 ttttgttctg gttgcaaaaa aatgctttat aaggggcaaa ctgcatttca taagacagga
      541 tctactcagc tcttttgctc cacaaggtgc atcatcggat attcttcacc tgtctgccta
      601 ccacctcctc ccaagaaaac ctgtgcaaac tgctcaaaag acattttaaa tccaaaggat
      661 gtgatcacaa cccgatttga aaattcctct cctagcaaag atttctgcag ccaatcatgc
      721 ctttcttctt atgagctaaa gaaaaaacct gttgttacca tatataccaa tagcatttca
      781 actaggtgca gtatgtgtca gaagaatgct gatattcgat ttgaagttaa atatcaaaat
      841 gtggtacatg gtctttgtag tgatgcctgt ttttcaaaat ttcattctac caacaacctt
      901 accatgaact gttgtgagaa ctgtggaagc tattgctata gtagctctgg tccttgccag
      961 tcccagaagg tttttagttc aacaagtatc acagcatata aacagaattc agcccaaact
     1021 cctccatatg ccttggggaa atcattgagg ccctcagctg aaatgattga gactacgaac
     1081 gactcaggaa aaacagagct tttctgctct attaattgct tatctgctta cagagttaag
     1141 acagttattt cttcaggtgt ccaagttttc tgtcatagtt gtaaaacctc agcagtccct
     1201 cagtatcacc tagccatgtc caatggaact atatacagct tctgcagctc cagttgtgtg
     1261 gtggctttcc agaatgtatt taacaagcca aaaggaacaa actcttcagc agtgcccttg
     1321 tctcagggcc aagtggttgt aagtccaccc tctgggtcag cagtgtcagc aggaggaggt
     1381 aacacctctg ccgtttcccc cagctccgtc agtggctctg ccgcagccaa tctccagcct
     1441 ccttctgctc agtcccagcg agttgcttta acccatacag ttgttaaact caagtgtcag
     1501 cactgtaacc atctgtttgc cacaaaacca gaacttcttt tctacaaggg taaaatgttt
     1561 ctgttttgtg gcaagatttg ctctgatgaa tacaaaaaga gaaataaagt tatggcaatg
     1621 tgtgactact gtaaactgca gaaaattata aaggagactg tacgattctc aggggttgat
     1681 aagccattct gtagtgaagt ttgcaaattc ctctctgccc gtgactttgg agaacgatgg
     1741 ggaaactact gtaagatgtg cagttattgt tcacagacat cccctaattt ggtagaaaat
     1801 cgattggagg gcaagttaga agagttttgt tgtgaagact gcatgaccaa atttactgtt
     1861 ctattttatc agatggccaa gtgtgatggt tgtaaacgac agggtaagct aagtgagtcc
     1921 ataaaatggc gaggaaacat caaacatttc tgtaacctat tttgtgtcat ggagttttgt
     1981 catcgtcagc aaattatgaa tgaccctctg tcacaaaata aagtaaatat ttctaaggca
     2041 caaactgctt cagtggagct cccttctgca aggacaaata caataccagt tataaccaat
     2101 gtggtgtcat tggcaaaaat atctcctgcc cagctcacag agaatgttgt tttaaaaggt
     2161 gcagttaata ctaaagaggc agcaaagatc attgaagatg gaagtacaca gacagatgcc
     2221 atgaaacttc tgtcttccca gtctttgaag cttttaaaga acaaagcatt attgtgcaaa
     2281 cccgtcacac agaccaaggc cacctcttgc aaaccacata cacaacacaa ggaatgtcag
     2341 acagatttat ctatgcctaa cgagaaaaat gatgtggaac ttgattctcc acctgcaaag
     2401 aaaaaaagaa taggtttttt ccagacttac gatgtggaat atttaaaagt tggttttatt
     2461 atctgtccgg gatcaaaaga aagctcacca aggccacagt gtgtcatctg tggagaaatt
     2521 ttatccagtg aaaacatgaa gccagcaaat ctttctcatc atttgaagac aaagcattca
     2581 gaattagaaa acaaaccagt agattttttt gaacaaaaat ctcttgaaat ggaatgtcaa
     2641 aacagtgctt taaaaaagtg tttactagtt gaaaagtcac ttgtgaaagc ttcttattta
     2701 attgctttcc aaattgctgc cagcaaaaag ccattttcca ttgctgaaga agtagttaaa
     2761 ccatatttag tagaaatgtg ttcagaagtt ttgggttcca gtgctggaga caaaatgaaa
     2821 accattcctc tttctaatag tacaattgga cacaggattg atgaactatc tgcagacatt
     2881 gaagatcagc tgattcagaa agtcagagag tcaaagtggt ttgcccttca gatagatgag
     2941 tcattagaaa tctcaaatac cacccttctt ttgtgctata ttcgtttcat tgattatggt
     3001 tgtagtgata taaaagaaga attattatgt tgcattgaaa tgccttctca gatgactggt
     3061 tttgaaatat ttgaactaat aaataaatat attgatagta aatctctgaa ctggaagcat
     3121 tgtgttggtc tctgtacaga tggggctgca agcatgactg gtaggtgttc tggtttaagg
     3181 gcaaaaattc aagaagttgc catgaataca gtggcattta cacattgttt tattcaccgt
     3241 gaacatttag cagcagaaaa gttgtctccg tgcttacatg aaattcttat gcagtcagca
     3301 caaattttaa gttttataaa gagcaatgcg ttgaattcac gaatgttaac aattttgtgt
     3361 gaagagatga ggtctgagca cgtgaattta ccacttcatg ctgaagtacg ttggatatca
     3421 agagggagaa ttttaacaag attatttgaa ttacgacatg aaattgaaat atttttaaat
     3481 caaaaccatt cagatttggc caagtatttt tttgatgagg aatgggttgc aaagctggcc
     3541 tacttatcag atattttttc acttataaat gaactaaatt taagtctcca aggatctatg
     3601 actactctct tcaatttgta taataaaatc gatatactta agaaaaagtt aaaaatgtgg
     3661 ttgaagcgca tgcaagagaa tgattatgac atgttccctt cattttctga attctcaaac
     3721 tcatcaggct taaatatgag cagtattgca agcattattt ttgagcacct ggaaggactt
     3781 tctcaaatgc tcaatgactg ttacccacca gaagaagact tgtgttcagg aaatttgtgg
     3841 ataattaatc cttttatgaa tcaccaaaat agtaatctca cggacttcga agaggaaaaa
     3901 ctagcacggt tatcgtcaga tttaggatta caatcagtat ttaaatcaat gtctgtaact
     3961 cagttttgga taaatgcaaa ggcaagttac ccagaactcc atgaaaaggc actgaaattt
     4021 ttattgcctt tttcaactat ttatttatgt gatgctacat tttcagcttt gactgagtca
     4081 aaacaaagaa atctgttggt ttctggccct gccctacgac ttgcagtcac atctttcatt
     4141 ccgaggatag aaaaattagt aaaggagaaa gaatagtaat gtgcatattg cttattatca
     4201 aagtctatac ttttgtgtta aattttgtat gagataagta tcctaaaata taaattccta
     4261 atgtggatgt gtgttctcgg tgat
//
LOCUS       XM_032645743            4226 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X9, mRNA.
ACCESSION   XM_032645743
VERSION     XM_032645743.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4226
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4226
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760592"
     CDS             153..4118
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X2"
                     /protein_id="XP_032501634.1"
                     /db_xref="GeneID:116760592"
                     /translation="MKEPLDGECGKAMAPQRGLLDKIKEEPDNAQEYVCASKPKTQES
                     ELKISAVFSVSDSPLAQQLTPGFQLSLASSGPNISLPSVPAVAIQVFCSGCKKMLYKG
                     QTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPPKKTCANCSKDILNPKDVITTRFENSS
                     PSKDFCSQSCLSSYELKKKPVVTIYTNSISTRCSMCQKNADIRFEVKYQNVVHGLCSD
                     ACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQSQKVFSSTSITAYKQNSAQTPPYALG
                     KSLRPSAEMIETTNDSGKTELFCSINCLSAYRVKTVISSGVQVFCHSCKTSAVPQYHL
                     AMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSSAVPLSQGQVVVSPPSGSAVSAGGGNT
                     SAVSPSSVSGSAAANLQPPSAQSQRVALTHTVVKLKCQHCNHLFATKPELLFYKGKMF
                     LFCGKICSDEYKKRNKVMAMCDYCKLQKIIKETVRFSGVDKPFCSEVCKFLSARDFGE
                     RWGNYCKMCSYCSQTSPNLVENRLEGKLEEFCCEDCMTKFTVLFYQMAKCDGCKRQGK
                     LSESIKWRGNIKHFCNLFCVMEFCHRQQIMNDPLSQNKVNISKAQTASVELPSARTNT
                     IPVITNVVSLAKISPAQLTENVVLKGAVNTKEAAKIIEDGSTQTDAMKLLSSQSLKLL
                     KNKALLCKPVTQTKATSCKPHTQHKECQTDLSMPNEKNDVELDSPPAKKKRIGFFQTY
                     DVEYLKVGFIICPGSKESSPRPQCVICGEILSSENMKPANLSHHLKTKHSELENKPVD
                     FFEQKSLEMECQNSALKKCLLVEKSLVKASYLIAFQIAASKKPFSIAEEVVKPYLVEM
                     CSEVLGSSAGDKMKTIPLSNSTIGHRIDELSADIEDQLIQKVRESKWFALQIDESLEI
                     SNTTLLLCYIRFIDYGCSDIKEELLCCIEMPSQMTGFEIFELINKYIDSKSLNWKHCV
                     GLCTDGAASMTGRCSGLRAKIQEVAMNTVAFTHCFIHREHLAAEKLSPCLHEILMQSA
                     QILSFIKSNALNSRMLTILCEEMRSEHVNLPLHAEVRWISRGRILTRLFELRHEIEIF
                     LNQNHSDLAKYFFDEEWVAKLAYLSDIFSLINELNLSLQGSMTTLFNLYNKIDILKKK
                     LKMWLKRMQENDYDMFPSFSEFSNSSGLNMSSIASIIFEHLEGLSQMLNDCYPPEEDL
                     CSGNLWIINPFMNHQNSNLTDFEEEKLARLSSDLGLQSVFKSMSVTQFWINAKASYPE
                     LHEKALKFLLPFSTIYLCDATFSALTESKQRNLLVSGPALRLAVTSFIPRIEKLVKEK
                     E"
     misc_feature    552..674
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2757..3116
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 aaagggggcg gagactaggg ttgcgcacgc gcagttgtcc gggtgttgcg ttgcgatgga
       61 ttaggcggaa aaattcccga atccaactat ctatcaccaa gaagaaatct attagtttta
      121 gaccggggaa ttcctttacc taaaaaatta gaatgaaaga acctttggat ggtgaatgtg
      181 gcaaagcaat ggcaccgcag cgggggcttc tggacaaaat taaagaagaa cctgacaatg
      241 ctcaagaata tgtatgtgct tcaaagccaa aaactcaaga aagtgaactg aaaattagtg
      301 ctgtcttttc agtcagtgac agtcctcttg cacaacagtt gaccccaggc tttcagctct
      361 ctcttgcatc atctggccca aatatatctc ttccttcagt tccagccgta gctattcagg
      421 ttttttgttc tggttgcaaa aaaatgcttt ataaggggca aactgcattt cataagacag
      481 gatctactca gctcttttgc tccacaaggt gcatcatcgg atattcttca cctgtctgcc
      541 taccacctcc tcccaagaaa acctgtgcaa actgctcaaa agacatttta aatccaaagg
      601 atgtgatcac aacccgattt gaaaattcct ctcctagcaa agatttctgc agccaatcat
      661 gcctttcttc ttatgagcta aagaaaaaac ctgttgttac catatatacc aatagcattt
      721 caactaggtg cagtatgtgt cagaagaatg ctgatattcg atttgaagtt aaatatcaaa
      781 atgtggtaca tggtctttgt agtgatgcct gtttttcaaa atttcattct accaacaacc
      841 ttaccatgaa ctgttgtgag aactgtggaa gctattgcta tagtagctct ggtccttgcc
      901 agtcccagaa ggtttttagt tcaacaagta tcacagcata taaacagaat tcagcccaaa
      961 ctcctccata tgccttgggg aaatcattga ggccctcagc tgaaatgatt gagactacga
     1021 acgactcagg aaaaacagag cttttctgct ctattaattg cttatctgct tacagagtta
     1081 agacagttat ttcttcaggt gtccaagttt tctgtcatag ttgtaaaacc tcagcagtcc
     1141 ctcagtatca cctagccatg tccaatggaa ctatatacag cttctgcagc tccagttgtg
     1201 tggtggcttt ccagaatgta tttaacaagc caaaaggaac aaactcttca gcagtgccct
     1261 tgtctcaggg ccaagtggtt gtaagtccac cctctgggtc agcagtgtca gcaggaggag
     1321 gtaacacctc tgccgtttcc cccagctccg tcagtggctc tgccgcagcc aatctccagc
     1381 ctccttctgc tcagtcccag cgagttgctt taacccatac agttgttaaa ctcaagtgtc
     1441 agcactgtaa ccatctgttt gccacaaaac cagaacttct tttctacaag ggtaaaatgt
     1501 ttctgttttg tggcaagatt tgctctgatg aatacaaaaa gagaaataaa gttatggcaa
     1561 tgtgtgacta ctgtaaactg cagaaaatta taaaggagac tgtacgattc tcaggggttg
     1621 ataagccatt ctgtagtgaa gtttgcaaat tcctctctgc ccgtgacttt ggagaacgat
     1681 ggggaaacta ctgtaagatg tgcagttatt gttcacagac atcccctaat ttggtagaaa
     1741 atcgattgga gggcaagtta gaagagtttt gttgtgaaga ctgcatgacc aaatttactg
     1801 ttctatttta tcagatggcc aagtgtgatg gttgtaaacg acagggtaag ctaagtgagt
     1861 ccataaaatg gcgaggaaac atcaaacatt tctgtaacct attttgtgtc atggagtttt
     1921 gtcatcgtca gcaaattatg aatgaccctc tgtcacaaaa taaagtaaat atttctaagg
     1981 cacaaactgc ttcagtggag ctcccttctg caaggacaaa tacaatacca gttataacca
     2041 atgtggtgtc attggcaaaa atatctcctg cccagctcac agagaatgtt gttttaaaag
     2101 gtgcagttaa tactaaagag gcagcaaaga tcattgaaga tggaagtaca cagacagatg
     2161 ccatgaaact tctgtcttcc cagtctttga agcttttaaa gaacaaagca ttattgtgca
     2221 aacccgtcac acagaccaag gccacctctt gcaaaccaca tacacaacac aaggaatgtc
     2281 agacagattt atctatgcct aacgagaaaa atgatgtgga acttgattct ccacctgcaa
     2341 agaaaaaaag aataggtttt ttccagactt acgatgtgga atatttaaaa gttggtttta
     2401 ttatctgtcc gggatcaaaa gaaagctcac caaggccaca gtgtgtcatc tgtggagaaa
     2461 ttttatccag tgaaaacatg aagccagcaa atctttctca tcatttgaag acaaagcatt
     2521 cagaattaga aaacaaacca gtagattttt ttgaacaaaa atctcttgaa atggaatgtc
     2581 aaaacagtgc tttaaaaaag tgtttactag ttgaaaagtc acttgtgaaa gcttcttatt
     2641 taattgcttt ccaaattgct gccagcaaaa agccattttc cattgctgaa gaagtagtta
     2701 aaccatattt agtagaaatg tgttcagaag ttttgggttc cagtgctgga gacaaaatga
     2761 aaaccattcc tctttctaat agtacaattg gacacaggat tgatgaacta tctgcagaca
     2821 ttgaagatca gctgattcag aaagtcagag agtcaaagtg gtttgccctt cagatagatg
     2881 agtcattaga aatctcaaat accacccttc ttttgtgcta tattcgtttc attgattatg
     2941 gttgtagtga tataaaagaa gaattattat gttgcattga aatgccttct cagatgactg
     3001 gttttgaaat atttgaacta ataaataaat atattgatag taaatctctg aactggaagc
     3061 attgtgttgg tctctgtaca gatggggctg caagcatgac tggtaggtgt tctggtttaa
     3121 gggcaaaaat tcaagaagtt gccatgaata cagtggcatt tacacattgt tttattcacc
     3181 gtgaacattt agcagcagaa aagttgtctc cgtgcttaca tgaaattctt atgcagtcag
     3241 cacaaatttt aagttttata aagagcaatg cgttgaattc acgaatgtta acaattttgt
     3301 gtgaagagat gaggtctgag cacgtgaatt taccacttca tgctgaagta cgttggatat
     3361 caagagggag aattttaaca agattatttg aattacgaca tgaaattgaa atatttttaa
     3421 atcaaaacca ttcagatttg gccaagtatt tttttgatga ggaatgggtt gcaaagctgg
     3481 cctacttatc agatattttt tcacttataa atgaactaaa tttaagtctc caaggatcta
     3541 tgactactct cttcaatttg tataataaaa tcgatatact taagaaaaag ttaaaaatgt
     3601 ggttgaagcg catgcaagag aatgattatg acatgttccc ttcattttct gaattctcaa
     3661 actcatcagg cttaaatatg agcagtattg caagcattat ttttgagcac ctggaaggac
     3721 tttctcaaat gctcaatgac tgttacccac cagaagaaga cttgtgttca ggaaatttgt
     3781 ggataattaa tccttttatg aatcaccaaa atagtaatct cacggacttc gaagaggaaa
     3841 aactagcacg gttatcgtca gatttaggat tacaatcagt atttaaatca atgtctgtaa
     3901 ctcagttttg gataaatgca aaggcaagtt acccagaact ccatgaaaag gcactgaaat
     3961 ttttattgcc tttttcaact atttatttat gtgatgctac attttcagct ttgactgagt
     4021 caaaacaaag aaatctgttg gtttctggcc ctgccctacg acttgcagtc acatctttca
     4081 ttccgaggat agaaaaatta gtaaaggaga aagaatagta atgtgcatat tgcttattat
     4141 caaagtctat acttttgtgt taaattttgt atgagataag tatcctaaaa tataaattcc
     4201 taatgtggat gtgtgttctc ggtgat
//
LOCUS       XM_032645753            4377 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X10, mRNA.
ACCESSION   XM_032645753
VERSION     XM_032645753.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4377
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4377
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760592"
     CDS             304..4269
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X2"
                     /protein_id="XP_032501644.1"
                     /db_xref="GeneID:116760592"
                     /translation="MKEPLDGECGKAMAPQRGLLDKIKEEPDNAQEYVCASKPKTQES
                     ELKISAVFSVSDSPLAQQLTPGFQLSLASSGPNISLPSVPAVAIQVFCSGCKKMLYKG
                     QTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPPKKTCANCSKDILNPKDVITTRFENSS
                     PSKDFCSQSCLSSYELKKKPVVTIYTNSISTRCSMCQKNADIRFEVKYQNVVHGLCSD
                     ACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQSQKVFSSTSITAYKQNSAQTPPYALG
                     KSLRPSAEMIETTNDSGKTELFCSINCLSAYRVKTVISSGVQVFCHSCKTSAVPQYHL
                     AMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSSAVPLSQGQVVVSPPSGSAVSAGGGNT
                     SAVSPSSVSGSAAANLQPPSAQSQRVALTHTVVKLKCQHCNHLFATKPELLFYKGKMF
                     LFCGKICSDEYKKRNKVMAMCDYCKLQKIIKETVRFSGVDKPFCSEVCKFLSARDFGE
                     RWGNYCKMCSYCSQTSPNLVENRLEGKLEEFCCEDCMTKFTVLFYQMAKCDGCKRQGK
                     LSESIKWRGNIKHFCNLFCVMEFCHRQQIMNDPLSQNKVNISKAQTASVELPSARTNT
                     IPVITNVVSLAKISPAQLTENVVLKGAVNTKEAAKIIEDGSTQTDAMKLLSSQSLKLL
                     KNKALLCKPVTQTKATSCKPHTQHKECQTDLSMPNEKNDVELDSPPAKKKRIGFFQTY
                     DVEYLKVGFIICPGSKESSPRPQCVICGEILSSENMKPANLSHHLKTKHSELENKPVD
                     FFEQKSLEMECQNSALKKCLLVEKSLVKASYLIAFQIAASKKPFSIAEEVVKPYLVEM
                     CSEVLGSSAGDKMKTIPLSNSTIGHRIDELSADIEDQLIQKVRESKWFALQIDESLEI
                     SNTTLLLCYIRFIDYGCSDIKEELLCCIEMPSQMTGFEIFELINKYIDSKSLNWKHCV
                     GLCTDGAASMTGRCSGLRAKIQEVAMNTVAFTHCFIHREHLAAEKLSPCLHEILMQSA
                     QILSFIKSNALNSRMLTILCEEMRSEHVNLPLHAEVRWISRGRILTRLFELRHEIEIF
                     LNQNHSDLAKYFFDEEWVAKLAYLSDIFSLINELNLSLQGSMTTLFNLYNKIDILKKK
                     LKMWLKRMQENDYDMFPSFSEFSNSSGLNMSSIASIIFEHLEGLSQMLNDCYPPEEDL
                     CSGNLWIINPFMNHQNSNLTDFEEEKLARLSSDLGLQSVFKSMSVTQFWINAKASYPE
                     LHEKALKFLLPFSTIYLCDATFSALTESKQRNLLVSGPALRLAVTSFIPRIEKLVKEK
                     E"
     misc_feature    703..825
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2908..3267
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 aaattctcat ctctcgcact ggttattaag ccagttgccc atttccatgt ctggcttgcc
       61 tgtttgggta aagacaactt tggagagttt cctttttgct tcaggtgtac tacgtcctgt
      121 ttaggggaag ggaagtccgc tgaatgacta atcttgttta caagaaggag tttgggaagc
      181 ggatctcaga ggggctcatt cctgagaccc tgcaggtggt ccactttaag aatccaacta
      241 tctatcacca agaagaaatc tattagtttt agaccgggga attcctttac ctaaaaaatt
      301 agaatgaaag aacctttgga tggtgaatgt ggcaaagcaa tggcaccgca gcgggggctt
      361 ctggacaaaa ttaaagaaga acctgacaat gctcaagaat atgtatgtgc ttcaaagcca
      421 aaaactcaag aaagtgaact gaaaattagt gctgtctttt cagtcagtga cagtcctctt
      481 gcacaacagt tgaccccagg ctttcagctc tctcttgcat catctggccc aaatatatct
      541 cttccttcag ttccagccgt agctattcag gttttttgtt ctggttgcaa aaaaatgctt
      601 tataaggggc aaactgcatt tcataagaca ggatctactc agctcttttg ctccacaagg
      661 tgcatcatcg gatattcttc acctgtctgc ctaccacctc ctcccaagaa aacctgtgca
      721 aactgctcaa aagacatttt aaatccaaag gatgtgatca caacccgatt tgaaaattcc
      781 tctcctagca aagatttctg cagccaatca tgcctttctt cttatgagct aaagaaaaaa
      841 cctgttgtta ccatatatac caatagcatt tcaactaggt gcagtatgtg tcagaagaat
      901 gctgatattc gatttgaagt taaatatcaa aatgtggtac atggtctttg tagtgatgcc
      961 tgtttttcaa aatttcattc taccaacaac cttaccatga actgttgtga gaactgtgga
     1021 agctattgct atagtagctc tggtccttgc cagtcccaga aggtttttag ttcaacaagt
     1081 atcacagcat ataaacagaa ttcagcccaa actcctccat atgccttggg gaaatcattg
     1141 aggccctcag ctgaaatgat tgagactacg aacgactcag gaaaaacaga gcttttctgc
     1201 tctattaatt gcttatctgc ttacagagtt aagacagtta tttcttcagg tgtccaagtt
     1261 ttctgtcata gttgtaaaac ctcagcagtc cctcagtatc acctagccat gtccaatgga
     1321 actatataca gcttctgcag ctccagttgt gtggtggctt tccagaatgt atttaacaag
     1381 ccaaaaggaa caaactcttc agcagtgccc ttgtctcagg gccaagtggt tgtaagtcca
     1441 ccctctgggt cagcagtgtc agcaggagga ggtaacacct ctgccgtttc ccccagctcc
     1501 gtcagtggct ctgccgcagc caatctccag cctccttctg ctcagtccca gcgagttgct
     1561 ttaacccata cagttgttaa actcaagtgt cagcactgta accatctgtt tgccacaaaa
     1621 ccagaacttc ttttctacaa gggtaaaatg tttctgtttt gtggcaagat ttgctctgat
     1681 gaatacaaaa agagaaataa agttatggca atgtgtgact actgtaaact gcagaaaatt
     1741 ataaaggaga ctgtacgatt ctcaggggtt gataagccat tctgtagtga agtttgcaaa
     1801 ttcctctctg cccgtgactt tggagaacga tggggaaact actgtaagat gtgcagttat
     1861 tgttcacaga catcccctaa tttggtagaa aatcgattgg agggcaagtt agaagagttt
     1921 tgttgtgaag actgcatgac caaatttact gttctatttt atcagatggc caagtgtgat
     1981 ggttgtaaac gacagggtaa gctaagtgag tccataaaat ggcgaggaaa catcaaacat
     2041 ttctgtaacc tattttgtgt catggagttt tgtcatcgtc agcaaattat gaatgaccct
     2101 ctgtcacaaa ataaagtaaa tatttctaag gcacaaactg cttcagtgga gctcccttct
     2161 gcaaggacaa atacaatacc agttataacc aatgtggtgt cattggcaaa aatatctcct
     2221 gcccagctca cagagaatgt tgttttaaaa ggtgcagtta atactaaaga ggcagcaaag
     2281 atcattgaag atggaagtac acagacagat gccatgaaac ttctgtcttc ccagtctttg
     2341 aagcttttaa agaacaaagc attattgtgc aaacccgtca cacagaccaa ggccacctct
     2401 tgcaaaccac atacacaaca caaggaatgt cagacagatt tatctatgcc taacgagaaa
     2461 aatgatgtgg aacttgattc tccacctgca aagaaaaaaa gaataggttt tttccagact
     2521 tacgatgtgg aatatttaaa agttggtttt attatctgtc cgggatcaaa agaaagctca
     2581 ccaaggccac agtgtgtcat ctgtggagaa attttatcca gtgaaaacat gaagccagca
     2641 aatctttctc atcatttgaa gacaaagcat tcagaattag aaaacaaacc agtagatttt
     2701 tttgaacaaa aatctcttga aatggaatgt caaaacagtg ctttaaaaaa gtgtttacta
     2761 gttgaaaagt cacttgtgaa agcttcttat ttaattgctt tccaaattgc tgccagcaaa
     2821 aagccatttt ccattgctga agaagtagtt aaaccatatt tagtagaaat gtgttcagaa
     2881 gttttgggtt ccagtgctgg agacaaaatg aaaaccattc ctctttctaa tagtacaatt
     2941 ggacacagga ttgatgaact atctgcagac attgaagatc agctgattca gaaagtcaga
     3001 gagtcaaagt ggtttgccct tcagatagat gagtcattag aaatctcaaa taccaccctt
     3061 cttttgtgct atattcgttt cattgattat ggttgtagtg atataaaaga agaattatta
     3121 tgttgcattg aaatgccttc tcagatgact ggttttgaaa tatttgaact aataaataaa
     3181 tatattgata gtaaatctct gaactggaag cattgtgttg gtctctgtac agatggggct
     3241 gcaagcatga ctggtaggtg ttctggttta agggcaaaaa ttcaagaagt tgccatgaat
     3301 acagtggcat ttacacattg ttttattcac cgtgaacatt tagcagcaga aaagttgtct
     3361 ccgtgcttac atgaaattct tatgcagtca gcacaaattt taagttttat aaagagcaat
     3421 gcgttgaatt cacgaatgtt aacaattttg tgtgaagaga tgaggtctga gcacgtgaat
     3481 ttaccacttc atgctgaagt acgttggata tcaagaggga gaattttaac aagattattt
     3541 gaattacgac atgaaattga aatattttta aatcaaaacc attcagattt ggccaagtat
     3601 ttttttgatg aggaatgggt tgcaaagctg gcctacttat cagatatttt ttcacttata
     3661 aatgaactaa atttaagtct ccaaggatct atgactactc tcttcaattt gtataataaa
     3721 atcgatatac ttaagaaaaa gttaaaaatg tggttgaagc gcatgcaaga gaatgattat
     3781 gacatgttcc cttcattttc tgaattctca aactcatcag gcttaaatat gagcagtatt
     3841 gcaagcatta tttttgagca cctggaagga ctttctcaaa tgctcaatga ctgttaccca
     3901 ccagaagaag acttgtgttc aggaaatttg tggataatta atccttttat gaatcaccaa
     3961 aatagtaatc tcacggactt cgaagaggaa aaactagcac ggttatcgtc agatttagga
     4021 ttacaatcag tatttaaatc aatgtctgta actcagtttt ggataaatgc aaaggcaagt
     4081 tacccagaac tccatgaaaa ggcactgaaa tttttattgc ctttttcaac tatttattta
     4141 tgtgatgcta cattttcagc tttgactgag tcaaaacaaa gaaatctgtt ggtttctggc
     4201 cctgccctac gacttgcagt cacatctttc attccgagga tagaaaaatt agtaaaggag
     4261 aaagaatagt aatgtgcata ttgcttatta tcaaagtcta tacttttgtg ttaaattttg
     4321 tatgagataa gtatcctaaa atataaattc ctaatgtgga tgtgtgttct cggtgat
//
LOCUS       XM_032645761            4322 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 6
            (ZMYM6), transcript variant X11, mRNA.
ACCESSION   XM_032645761
VERSION     XM_032645761.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4322
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4322
                     /gene="ZMYM6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760592"
     CDS             396..4214
                     /gene="ZMYM6"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform X3"
                     /protein_id="XP_032501652.1"
                     /db_xref="GeneID:116760592"
                     /translation="MGLNYAVPLTAQQLTPGFQLSLASSGPNISLPSVPAVAIQVFCS
                     GCKKMLYKGQTAFHKTGSTQLFCSTRCIIGYSSPVCLPPPPKKTCANCSKDILNPKDV
                     ITTRFENSSPSKDFCSQSCLSSYELKKKPVVTIYTNSISTRCSMCQKNADIRFEVKYQ
                     NVVHGLCSDACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQSQKVFSSTSITAYKQNS
                     AQTPPYALGKSLRPSAEMIETTNDSGKTELFCSINCLSAYRVKTVISSGVQVFCHSCK
                     TSAVPQYHLAMSNGTIYSFCSSSCVVAFQNVFNKPKGTNSSAVPLSQGQVVVSPPSGS
                     AVSAGGGNTSAVSPSSVSGSAAANLQPPSAQSQRVALTHTVVKLKCQHCNHLFATKPE
                     LLFYKGKMFLFCGKICSDEYKKRNKVMAMCDYCKLQKIIKETVRFSGVDKPFCSEVCK
                     FLSARDFGERWGNYCKMCSYCSQTSPNLVENRLEGKLEEFCCEDCMTKFTVLFYQMAK
                     CDGCKRQGKLSESIKWRGNIKHFCNLFCVMEFCHRQQIMNDPLSQNKVNISKAQTASV
                     ELPSARTNTIPVITNVVSLAKISPAQLTENVVLKGAVNTKEAAKIIEDGSTQTDAMKL
                     LSSQSLKLLKNKALLCKPVTQTKATSCKPHTQHKECQTDLSMPNEKNDVELDSPPAKK
                     KRIGFFQTYDVEYLKVGFIICPGSKESSPRPQCVICGEILSSENMKPANLSHHLKTKH
                     SELENKPVDFFEQKSLEMECQNSALKKCLLVEKSLVKASYLIAFQIAASKKPFSIAEE
                     VVKPYLVEMCSEVLGSSAGDKMKTIPLSNSTIGHRIDELSADIEDQLIQKVRESKWFA
                     LQIDESLEISNTTLLLCYIRFIDYGCSDIKEELLCCIEMPSQMTGFEIFELINKYIDS
                     KSLNWKHCVGLCTDGAASMTGRCSGLRAKIQEVAMNTVAFTHCFIHREHLAAEKLSPC
                     LHEILMQSAQILSFIKSNALNSRMLTILCEEMRSEHVNLPLHAEVRWISRGRILTRLF
                     ELRHEIEIFLNQNHSDLAKYFFDEEWVAKLAYLSDIFSLINELNLSLQGSMTTLFNLY
                     NKIDILKKKLKMWLKRMQENDYDMFPSFSEFSNSSGLNMSSIASIIFEHLEGLSQMLN
                     DCYPPEEDLCSGNLWIINPFMNHQNSNLTDFEEEKLARLSSDLGLQSVFKSMSVTQFW
                     INAKASYPELHEKALKFLLPFSTIYLCDATFSALTESKQRNLLVSGPALRLAVTSFIP
                     RIEKLVKEKE"
     misc_feature    648..770
                     /gene="ZMYM6"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    <2853..3212
                     /gene="ZMYM6"
                     /note="Domain of unknown function (DUF4371); Region:
                     DUF4371; cl46273"
                     /db_xref="CDD:480613"
ORIGIN      
        1 gtccgggtgt tgcgttgcga tggattaggc ggaaaaattc ccgaatccaa ctatctatca
       61 ccaagaagaa atctattagt tttagaccgg ggaattcctt tacctaaaaa attagaatga
      121 aagaaccttt ggatggtgaa tgtggcaaag caatggcacc gcagcggggg cttctggaca
      181 aaattaaaga agaacctgac aatgctcaag aatatgtatg tgcttcaaag ccaaaaactc
      241 aagaaagtga actgaaaatt agtgctgtct tttcagtcag tgacagtcct cttggtaaga
      301 aacagaacta caaagcagtg cttttcaaac tggctagctg gtcttgacca gtattttaaa
      361 aagtggaata taattacagt tggtccttga acaacatggg tttgaactac gcagttccac
      421 ttacagcaca acagttgacc ccaggctttc agctctctct tgcatcatct ggcccaaata
      481 tatctcttcc ttcagttcca gccgtagcta ttcaggtttt ttgttctggt tgcaaaaaaa
      541 tgctttataa ggggcaaact gcatttcata agacaggatc tactcagctc ttttgctcca
      601 caaggtgcat catcggatat tcttcacctg tctgcctacc acctcctccc aagaaaacct
      661 gtgcaaactg ctcaaaagac attttaaatc caaaggatgt gatcacaacc cgatttgaaa
      721 attcctctcc tagcaaagat ttctgcagcc aatcatgcct ttcttcttat gagctaaaga
      781 aaaaacctgt tgttaccata tataccaata gcatttcaac taggtgcagt atgtgtcaga
      841 agaatgctga tattcgattt gaagttaaat atcaaaatgt ggtacatggt ctttgtagtg
      901 atgcctgttt ttcaaaattt cattctacca acaaccttac catgaactgt tgtgagaact
      961 gtggaagcta ttgctatagt agctctggtc cttgccagtc ccagaaggtt tttagttcaa
     1021 caagtatcac agcatataaa cagaattcag cccaaactcc tccatatgcc ttggggaaat
     1081 cattgaggcc ctcagctgaa atgattgaga ctacgaacga ctcaggaaaa acagagcttt
     1141 tctgctctat taattgctta tctgcttaca gagttaagac agttatttct tcaggtgtcc
     1201 aagttttctg tcatagttgt aaaacctcag cagtccctca gtatcaccta gccatgtcca
     1261 atggaactat atacagcttc tgcagctcca gttgtgtggt ggctttccag aatgtattta
     1321 acaagccaaa aggaacaaac tcttcagcag tgcccttgtc tcagggccaa gtggttgtaa
     1381 gtccaccctc tgggtcagca gtgtcagcag gaggaggtaa cacctctgcc gtttccccca
     1441 gctccgtcag tggctctgcc gcagccaatc tccagcctcc ttctgctcag tcccagcgag
     1501 ttgctttaac ccatacagtt gttaaactca agtgtcagca ctgtaaccat ctgtttgcca
     1561 caaaaccaga acttcttttc tacaagggta aaatgtttct gttttgtggc aagatttgct
     1621 ctgatgaata caaaaagaga aataaagtta tggcaatgtg tgactactgt aaactgcaga
     1681 aaattataaa ggagactgta cgattctcag gggttgataa gccattctgt agtgaagttt
     1741 gcaaattcct ctctgcccgt gactttggag aacgatgggg aaactactgt aagatgtgca
     1801 gttattgttc acagacatcc cctaatttgg tagaaaatcg attggagggc aagttagaag
     1861 agttttgttg tgaagactgc atgaccaaat ttactgttct attttatcag atggccaagt
     1921 gtgatggttg taaacgacag ggtaagctaa gtgagtccat aaaatggcga ggaaacatca
     1981 aacatttctg taacctattt tgtgtcatgg agttttgtca tcgtcagcaa attatgaatg
     2041 accctctgtc acaaaataaa gtaaatattt ctaaggcaca aactgcttca gtggagctcc
     2101 cttctgcaag gacaaataca ataccagtta taaccaatgt ggtgtcattg gcaaaaatat
     2161 ctcctgccca gctcacagag aatgttgttt taaaaggtgc agttaatact aaagaggcag
     2221 caaagatcat tgaagatgga agtacacaga cagatgccat gaaacttctg tcttcccagt
     2281 ctttgaagct tttaaagaac aaagcattat tgtgcaaacc cgtcacacag accaaggcca
     2341 cctcttgcaa accacataca caacacaagg aatgtcagac agatttatct atgcctaacg
     2401 agaaaaatga tgtggaactt gattctccac ctgcaaagaa aaaaagaata ggttttttcc
     2461 agacttacga tgtggaatat ttaaaagttg gttttattat ctgtccggga tcaaaagaaa
     2521 gctcaccaag gccacagtgt gtcatctgtg gagaaatttt atccagtgaa aacatgaagc
     2581 cagcaaatct ttctcatcat ttgaagacaa agcattcaga attagaaaac aaaccagtag
     2641 atttttttga acaaaaatct cttgaaatgg aatgtcaaaa cagtgcttta aaaaagtgtt
     2701 tactagttga aaagtcactt gtgaaagctt cttatttaat tgctttccaa attgctgcca
     2761 gcaaaaagcc attttccatt gctgaagaag tagttaaacc atatttagta gaaatgtgtt
     2821 cagaagtttt gggttccagt gctggagaca aaatgaaaac cattcctctt tctaatagta
     2881 caattggaca caggattgat gaactatctg cagacattga agatcagctg attcagaaag
     2941 tcagagagtc aaagtggttt gcccttcaga tagatgagtc attagaaatc tcaaatacca
     3001 cccttctttt gtgctatatt cgtttcattg attatggttg tagtgatata aaagaagaat
     3061 tattatgttg cattgaaatg ccttctcaga tgactggttt tgaaatattt gaactaataa
     3121 ataaatatat tgatagtaaa tctctgaact ggaagcattg tgttggtctc tgtacagatg
     3181 gggctgcaag catgactggt aggtgttctg gtttaagggc aaaaattcaa gaagttgcca
     3241 tgaatacagt ggcatttaca cattgtttta ttcaccgtga acatttagca gcagaaaagt
     3301 tgtctccgtg cttacatgaa attcttatgc agtcagcaca aattttaagt tttataaaga
     3361 gcaatgcgtt gaattcacga atgttaacaa ttttgtgtga agagatgagg tctgagcacg
     3421 tgaatttacc acttcatgct gaagtacgtt ggatatcaag agggagaatt ttaacaagat
     3481 tatttgaatt acgacatgaa attgaaatat ttttaaatca aaaccattca gatttggcca
     3541 agtatttttt tgatgaggaa tgggttgcaa agctggccta cttatcagat attttttcac
     3601 ttataaatga actaaattta agtctccaag gatctatgac tactctcttc aatttgtata
     3661 ataaaatcga tatacttaag aaaaagttaa aaatgtggtt gaagcgcatg caagagaatg
     3721 attatgacat gttcccttca ttttctgaat tctcaaactc atcaggctta aatatgagca
     3781 gtattgcaag cattattttt gagcacctgg aaggactttc tcaaatgctc aatgactgtt
     3841 acccaccaga agaagacttg tgttcaggaa atttgtggat aattaatcct tttatgaatc
     3901 accaaaatag taatctcacg gacttcgaag aggaaaaact agcacggtta tcgtcagatt
     3961 taggattaca atcagtattt aaatcaatgt ctgtaactca gttttggata aatgcaaagg
     4021 caagttaccc agaactccat gaaaaggcac tgaaattttt attgcctttt tcaactattt
     4081 atttatgtga tgctacattt tcagctttga ctgagtcaaa acaaagaaat ctgttggttt
     4141 ctggccctgc cctacgactt gcagtcacat ctttcattcc gaggatagaa aaattagtaa
     4201 aggagaaaga atagtaatgt gcatattgct tattatcaaa gtctatactt ttgtgttaaa
     4261 ttttgtatga gataagtatc ctaaaatata aattcctaat gtggatgtgt gttctcggtg
     4321 at
//
LOCUS       XM_032645784            1759 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase related 5
            (PLPPR5), transcript variant X1, mRNA.
ACCESSION   XM_032645784
VERSION     XM_032645784.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1759
                     /gene="PLPPR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 Proteins, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116760628"
     CDS             98..1048
                     /gene="PLPPR5"
                     /codon_start=1
                     /product="phospholipid phosphatase-related protein type 5
                     isoform X1"
                     /protein_id="XP_032501675.1"
                     /db_xref="GeneID:116760628"
                     /translation="MPRLPAALTSSMLYFQMVIMAGTVMLAYYFEYTDTFTVNVQGFF
                     CHDSAYRKPYPGPEDSSAVPPVLLYSLAAGVPVLVIIVGETAVFCLQLATRDFENQEK
                     TILTGDCCYINPLVRRTVRFLGIYTFGLFATDIFVNAGQVVTGNLAPHFLALCKPNYT
                     ALGCQQYTQFISGEEACTGNPDLIMRARKTFPSKEAALSVYAAMYLTMYITNTIKAKG
                     TRLAKPVLCLGLMCLAFLTGLNRVAEYRNHWSDVIAGFLVGISIAVFLVVCVVNNFKG
                     RQPENEHIHTDNLAQMPMISIPRVESPLEKNHITAFAEVT"
     misc_feature    449..898
                     /gene="PLPPR5"
                     /note="PAP2, wunen subfamily. Most likely a family of
                     membrane associated phosphatidic acid phosphatases. Wunen
                     is a drosophila protein expressed in the central nervous
                     system, which provides repellent activity towards
                     primordial germ cells (PGCs), controls the...; Region:
                     PAP2_wunen; cd03384"
                     /db_xref="CDD:239479"
     misc_feature    order(518..520,539..541,674..682,818..820,836..838,
                     848..850)
                     /gene="PLPPR5"
                     /note="active site"
                     /db_xref="CDD:239479"
ORIGIN      
        1 gccgcccccg ccgccgcgcc cccggtagct gcctcggcgg acccgggagg gggcccgtcc
       61 gccgcccgct cggctcggcc cggcccggga ggcgtgcatg ccccggctgc ccgcggcgct
      121 caccagcagc atgctctatt tccagatggt gatcatggca gggacggtga tgctggcgta
      181 ctacttcgaa tacacggaca cgttcactgt gaacgtgcag ggcttcttct gccacgacag
      241 cgcctaccgc aagccctacc cgggcccgga ggacagcagc gccgtgcccc ccgtgctcct
      301 ctactcgctg gccgccgggg tccccgtgct cgtgataata gttggagaaa ctgctgtgtt
      361 ttgcctacaa ctggccacaa gggattttga aaaccaggag aaaactattt taactggaga
      421 ctgttgctat ataaacccac tggtgaggag aactgtgcga tttcttggaa tttatacgtt
      481 tggactgttt gctacagaca tctttgtaaa tgccggacaa gtagttacag gaaatctggc
      541 tccacatttt ctcgccctgt gtaaacccaa ctacacggca cttgggtgtc agcagtatac
      601 gcagttcatc agtggggaag aggcctgcac gggcaacccg gatctcatca tgagagcaag
      661 gaaaacattt ccatccaaag aagcggctct cagtgtctat gcagctatgt atctgacaat
      721 gtacattacc aacacaatca aagccaaagg aacaagactt gctaagcccg ttctatgcct
      781 gggcttaatg tgtttggcct ttcttactgg gctcaacaga gtagcagaat atcgaaatca
      841 ttggtccgat gtgatagcag gctttctggt tggaatatct atagcagtat ttctggtcgt
      901 gtgtgtggta aataatttca aaggaagaca accagaaaat gagcatatac acacagataa
      961 tctggcacag atgccaatga tcagcattcc tcgagtagaa agtcctttgg aaaagaacca
     1021 catcactgcc ttcgcagaag tcacatgata ttgaagcaga tggtctttca ctgcattgga
     1081 catcgtccct tttcaccatc cattcataac acccagagtg tgtttgatga cgaaaacgtt
     1141 tatcaagttg tctaatcatt tttataattt aaaaatcagt gtcaacttat ctgtttcccc
     1201 cactagactg tgagctcctc aagggcagga ctgtgtcttt cttctctgtc tccccagcac
     1261 ctataacaaa gcctcacaca gagtaggttc aataaaaaat gatgaccaat gaacaaaaat
     1321 taattctgaa ataaaacatt cacttcagtt tctcacagaa tcactgagac catgtgaaaa
     1381 gaaacctcta cgcgagtcgt atttgtgtaa gaagtccctc tattttgagc tagtcaagct
     1441 ttttaatttt tcatgtatct tctattcggc agcacaccat gtttcatttg aagtggactt
     1501 tgaaagtcat gggggctttt atttcattat tcagcatgac ttatttccat tctaacagat
     1561 ttcagtgtgt gaaattactt tacttttaga aagtatgttc tgtactaaaa taatgtttgc
     1621 acataatatt atgctatatt tcacttaaaa taccattcat actataaatt ctaagactgg
     1681 tgcttctgct tttgaagggg aaaatgccaa tttttactgt aataagtaat gtatcataat
     1741 taaaaattat ttatttgga
//
LOCUS       XM_032645794            1634 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase related 5
            (PLPPR5), transcript variant X2, mRNA.
ACCESSION   XM_032645794
VERSION     XM_032645794.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1634
                     /gene="PLPPR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760628"
     CDS             16..981
                     /gene="PLPPR5"
                     /codon_start=1
                     /product="phospholipid phosphatase-related protein type 5
                     isoform X2"
                     /protein_id="XP_032501685.1"
                     /db_xref="GeneID:116760628"
                     /translation="MPRLPAALTSSMLYFQMVIMAGTVMLAYYFEYTDTFTVNVQGFF
                     CHDSAYRKPYPGPEDSSAVPPVLLYSLAAGVPVLVIIVGETAVFCLQLATRDFENQEK
                     TILTGDCCYINPLVRRTVRFLGIYTFGLFATDIFVNAGQVVTGNLAPHFLALCKPNYT
                     ALGCQQYTQFISGEEACTGNPDLIMRARKTFPSKEAALSVYAAMYLTMYITNTIKAKG
                     TRLAKPVLCLGLMCLAFLTGLNRVAEYRNHWSDVIAGFLVGISIAVFLVVCVVNNFKG
                     RQPENEHIHTDNLAQMPMISIPRVESPLEKVTSVQNHITAFAEVT"
     misc_feature    367..816
                     /gene="PLPPR5"
                     /note="PAP2, wunen subfamily. Most likely a family of
                     membrane associated phosphatidic acid phosphatases. Wunen
                     is a drosophila protein expressed in the central nervous
                     system, which provides repellent activity towards
                     primordial germ cells (PGCs), controls the...; Region:
                     PAP2_wunen; cd03384"
                     /db_xref="CDD:239479"
     misc_feature    order(436..438,457..459,592..600,736..738,754..756,
                     766..768)
                     /gene="PLPPR5"
                     /note="active site"
                     /db_xref="CDD:239479"
ORIGIN      
        1 gcccgggagg cgtgcatgcc ccggctgccc gcggcgctca ccagcagcat gctctatttc
       61 cagatggtga tcatggcagg gacggtgatg ctggcgtact acttcgaata cacggacacg
      121 ttcactgtga acgtgcaggg cttcttctgc cacgacagcg cctaccgcaa gccctacccg
      181 ggcccggagg acagcagcgc cgtgcccccc gtgctcctct actcgctggc cgccggggtc
      241 cccgtgctcg tgataatagt tggagaaact gctgtgtttt gcctacaact ggccacaagg
      301 gattttgaaa accaggagaa aactatttta actggagact gttgctatat aaacccactg
      361 gtgaggagaa ctgtgcgatt tcttggaatt tatacgtttg gactgtttgc tacagacatc
      421 tttgtaaatg ccggacaagt agttacagga aatctggctc cacattttct cgccctgtgt
      481 aaacccaact acacggcact tgggtgtcag cagtatacgc agttcatcag tggggaagag
      541 gcctgcacgg gcaacccgga tctcatcatg agagcaagga aaacatttcc atccaaagaa
      601 gcggctctca gtgtctatgc agctatgtat ctgacaatgt acattaccaa cacaatcaaa
      661 gccaaaggaa caagacttgc taagcccgtt ctatgcctgg gcttaatgtg tttggccttt
      721 cttactgggc tcaacagagt agcagaatat cgaaatcatt ggtccgatgt gatagcaggc
      781 tttctggttg gaatatctat agcagtattt ctggtcgtgt gtgtggtaaa taatttcaaa
      841 ggaagacaac cagaaaatga gcatatacac acagataatc tggcacagat gccaatgatc
      901 agcattcctc gagtagaaag tcctttggaa aaggtaacat ctgtacagaa ccacatcact
      961 gccttcgcag aagtcacatg atattgaagc agatggtctt tcactgcatt ggacatcgtc
     1021 ccttttcacc atccattcat aacacccaga gtgtgtttga tgacgaaaac gtttatcaag
     1081 ttgtctaatc atttttataa tttaaaaatc agtgtcaact tatctgtttc ccccactaga
     1141 ctgtgagctc ctcaagggca ggactgtgtc tttcttctct gtctccccag cacctataac
     1201 aaagcctcac acagagtagg ttcaataaaa aatgatgacc aatgaacaaa aattaattct
     1261 gaaataaaac attcacttca gtttctcaca gaatcactga gaccatgtga aaagaaacct
     1321 ctacgcgagt cgtatttgtg taagaagtcc ctctattttg agctagtcaa gctttttaat
     1381 ttttcatgta tcttctattc ggcagcacac catgtttcat ttgaagtgga ctttgaaagt
     1441 catgggggct tttatttcat tattcagcat gacttatttc cattctaaca gatttcagtg
     1501 tgtgaaatta ctttactttt agaaagtatg ttctgtacta aaataatgtt tgcacataat
     1561 attatgctat atttcactta aaataccatt catactataa attctaagac tggtgcttct
     1621 gcttttgaag ggga
//
LOCUS       XM_032645845            5217 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus complement C3d receptor 2 (CR2),
            transcript variant X1, mRNA.
ACCESSION   XM_032645845
VERSION     XM_032645845.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5217
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5217
                     /gene="CR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760650"
     CDS             85..4500
                     /gene="CR2"
                     /codon_start=1
                     /product="complement receptor type 2 isoform X1"
                     /protein_id="XP_032501736.1"
                     /db_xref="GeneID:116760650"
                     /translation="MGASGPLWVFLAFAVPGVLGQCKFLPRYPFAKPKIQSDQSEFAV
                     GTTWQYECLPGYVKRSFFITCLETSKWSDAQPVCKRKSCVSPRELLHGSVLAPRGIVF
                     GSTITYSCDKGYRLIGDSSATCIISDNIVTWDKEMPFCESIPCESPPAISNGDFYSSS
                     SEDFYYGMVVTYKCHVGQNGKKLFDLVGEKSIYCTSKDNRIGIWSSPPPRCIPVVKCP
                     IPEVENGIMESGFRRSFSLNDSVMFKCKPGFTMKGSNTVWCQPNSKWNPPLPRCFKGC
                     LPPPHIYHGNYNKLDEEFFAVGQEVFYSCEPGYTLIGTNPMQCTSLGTWRHPAPNCEA
                     KSCGAIPDQLLNGHVVAPPNLQLGAEVAFVCDKGYRLNGQSSSQCVSEGMRVLWNNKF
                     PVCERIFCDPPPPIKNGRNSYHSSPIAVNSVVRYSCLSAFRLIGESILFCITKDNVNG
                     IWDKAAPICEYYNKNSICSEPIVPGGYRNKMSRPPYRHGDSVTFTCKTNFTMKGNKTV
                     WCQANKTWGPTPLPTCESDISLECPSLPTIANGYHTGESVDSFAPGLSVTYSCEPGYL
                     LLGEKTIRCLSSGDWSAVAPTCKEAECELPGPLLNGQLKRPASLRVGATVNFFCSEGY
                     RLQGQPSSQCVIVGQRTFWTKFPVCEEILCPPPPPILNGTHTGSSSVNVRYGSTVTYT
                     CDQGPEQGVNFILTGERTIRCTTDSQKTGTWSGPAPRCELSVSEVRCPPPQILRGQIS
                     SGQKDQYSYNDTVVFACVFGFTMKGSKGIRCNAQGTWEPSVPVCEKDCQAPPKILHGQ
                     KEDRHMIRFDPGTSIKYSCDPGYVLVGEESIHCTSEGVWIPTAPTCKVTECEPIGKQV
                     FKKPKNQLIRLDVNSSCDEGYRLSESVYQQCQGRIPWFMEIRLCKDITCPPPPVIYNG
                     VHTGSSSDVLYGTTVTYTCNPGPERGVKFNLIGESTIRCTSNDQETGIWSGPAPLCKL
                     SLPAVQCSHVHVANGYKISSKEAPYFYNDSVIFKCNNGFTLKGSSQVRCKANNTWDPD
                     IPVCEKGCQPPSGLHHGRHTGGNRVLFVSGMTVDYTCDPGYLLVGNRSVHCMPSGNWS
                     PSAPRCEEAPCQPLKEGLQDVPVGSPVVPVNMSCQHGYKLTGHAYRKCQDDKNRVWFQ
                     KILLCKVIHCQPPPVINNGRHRGVMTEHFLYGNEVSYECDQGFYLLGEKSIRCISDSK
                     GRGSWRGPPPQCIKSPPVTHCPNPEVTHGYKLNKTRSSYSHNDIVHVACDPGFIMNGS
                     HLIRCHTDNKWVPAVPTCIKKAFLGCQHPFKIPHGNHTGGDIARFSPGMSILYSCNQG
                     YLLVGEAVLLCTHEGTWNGPVPYCKEVNCSFPDHINGIQSRLEPGKMYQYGAVITLEC
                     EDGYTLEGSPQSQCQEDHRWNPPLAVCKSPSSLVPLICGFSAGVVTLFCLGAITLRMI
                     LKHRERNYYTNASRKEDVHLETLEVYSVDPYNLAN"
     misc_feature    112..906
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    967..1656
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    1729..2436
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    2242..3186
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    3262..3930
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    <3727..4299
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 cgtcttctcc agccctgtca tcccggagct gccggaggct cgcgggtctc agacgcatcc
       61 agccgctggg gctgcagcct tggcatgggc gcctcgggtc cgctctgggt tttcttggct
      121 ttcgccgtgc caggggtcct cggtcagtgt aagttcctgc caaggtatcc ttttgctaag
      181 cctaaaattc agagtgatca gtctgagttt gctgttggga caacttggca atatgaatgt
      241 cttcctgggt atgtcaagag gtcattcttt atcacctgcc tagaaacctc caagtggtca
      301 gatgctcagc cagtctgtaa acgtaaatca tgtgtgagtc ctagagaact cctccatggc
      361 tctgtccttg cacccagggg tatcgtgttt gggtcaacaa ttacatattc ttgtgataaa
      421 ggatatcgac tcattggtga ctcctctgcc acatgtatta tctcagacaa tattgtaacc
      481 tgggataagg aaatgccttt ttgtgaatct attccttgtg agtcaccccc agccatctcc
      541 aatggagact tttacagcag cagtagcgag gacttttact atggaatggt ggttacttat
      601 aagtgccatg ttggacagaa tgggaaaaag ctgtttgacc tcgtgggtga aaagtcaata
      661 tactgcacca gcaaagacaa tcgaattggc atctggagca gccctccccc tcggtgtatt
      721 cctgtagtca aatgcccaat tccggaagtt gaaaatggaa ttatggaatc tggatttaga
      781 cgctcatttt ccttaaatga ttctgtgatg tttaagtgta agcccggctt taccatgaaa
      841 ggcagcaaca cagtatggtg ccaaccaaac agcaaatgga accctccact gccaaggtgc
      901 ttcaaggggt gtctaccacc tccacatatc taccacggta attataacaa attggatgag
      961 gaattctttg cagttggaca ggaagtgttc tacagctgtg agcctggcta tactctcatt
     1021 ggaactaacc ctatgcagtg tacctccttg ggaacctgga ggcatccagc ccccaactgt
     1081 gaagcaaaat catgtggtgc cattccagac caacttctca acggtcatgt ggtagctcct
     1141 cctaatctcc agcttggggc agaggttgca tttgtttgtg ataaggggta ccggttaaat
     1201 ggccaatctt ctagtcagtg tgtctcagaa ggaatgagag tactctggaa taataagttt
     1261 cctgtctgtg aacggatttt ttgtgaccct cctcctccta tcaaaaatgg gcggaatagt
     1321 tatcattcta gtcccatagc tgttaactct gtggtgaggt acagttgctt gagtgccttc
     1381 cgcctcattg gagaaagtat tcttttttgt ataactaaag acaatgtaaa tggaatctgg
     1441 gataaagctg ctcctatctg tgaatattac aataaaaatt ctatttgctc tgagcccata
     1501 gtaccaggtg gatacagaaa taaaatgtct agaccaccat acagacatgg tgattctgtg
     1561 acatttacct gtaagaccaa cttcaccatg aaaggaaaca aaactgtttg gtgccaagca
     1621 aataaaacat ggggaccaac accactacca acctgtgaga gtgatatctc cctggagtgt
     1681 ccatcacttc ccacaatcgc caacgggtat cacacagggg agagcgttga ttcctttgcc
     1741 ccaggattgt ctgtgaccta cagctgtgaa cctggttact tgcttcttgg agaaaagacc
     1801 attcgctgtt tgtcttcggg agactggagt gctgtcgctc ccacatgtaa agaggcagag
     1861 tgtgagcttc caggaccatt gctcaatggg cagttaaaga ggcccgcaag tcttcgggtt
     1921 ggtgcaactg tgaacttttt ctgtagtgaa gggtatcgat tacaaggcca accttctagc
     1981 cagtgtgtaa ttgttggaca gcgtactttt tggaccaaat ttccagtatg tgaagaaatt
     2041 ctttgcccac cacctcctcc tattctcaat ggaacacata cgggcagctc ttcagtgaat
     2101 gttcggtatg gaagcacagt cacttacacc tgtgaccagg gcccagagca aggagtgaac
     2161 ttcattctca ctggggagag aactatccgt tgtaccactg atagtcagaa gactgggacc
     2221 tggagcggcc ctgccccacg ctgtgaactt tctgtttctg aggttcggtg tccacctccc
     2281 cagatcctaa gaggccaaat atcatccggg cagaaagatc aatattccta taatgacact
     2341 gtggtatttg cctgcgtatt tggcttcacc atgaagggca gcaagggaat ccgatgtaat
     2401 gcccaaggca catgggaacc atcggtacca gtctgtgaaa aggattgtca agctcctcct
     2461 aaaatcctcc atgggcaaaa ggaagataga cacatgattc gctttgaccc tggaacatcc
     2521 ataaaatata gctgcgaccc tggctatgtg ctggtgggag aagaatccat acattgtacc
     2581 tctgagggag tgtggatacc cactgccccc acatgcaaag tgacagaatg tgaacctata
     2641 ggaaagcaag tctttaaaaa acccaagaac caacttatta gactagatgt caactcttct
     2701 tgtgatgaag ggtaccggct aagcgagagt gtttatcagc agtgccaagg cagaattcct
     2761 tggtttatgg agattcgtct ctgtaaagat atcacctgcc caccaccccc tgttatctac
     2821 aatggagtac acacagggag ttcctcagat gtcctatatg gtaccacagt cacttacaca
     2881 tgtaaccccg ggccagagag aggagtgaag ttcaacctca ttggggagag caccatccgt
     2941 tgtacaagca acgatcaaga gacgggcatc tggagtggcc ccgctcctct ctgtaaactt
     3001 tccctccctg ctgttcagtg ctcacatgtc cacgttgcaa atggatacaa gatatctagc
     3061 aaggaagccc catatttcta caatgacagt gtgatattca agtgtaataa tggatttact
     3121 ttgaagggca gcagtcaggt tcgttgcaaa gccaataaca cctgggatcc tgacatacca
     3181 gtttgtgaaa aaggctgtca gccaccttct gggctccacc atggtcggca tacaggtgga
     3241 aatagggtcc tctttgtctc tgggatgact gtagactaca cctgtgatcc tggctacttg
     3301 cttgtgggaa acagatccgt tcactgtatg ccttcaggaa attggagtcc ttctgcccct
     3361 cggtgtgaag aagcaccatg ccaacctttg aaagaaggtc ttcaagatgt tccagttggt
     3421 tcacctgtgg taccagttaa tatgtcctgc caacatgggt acaagttgac tggacatgct
     3481 tatcggaaat gtcaagatga taagaatagg gtttggttcc aaaagattct actttgtaaa
     3541 gttatccact gtcaacctcc accagtgatt aacaatggga ggcacagggg tgtaatgaca
     3601 gaacactttc tgtatggaaa tgaagtctct tatgaatgtg accaaggatt ctatcttctg
     3661 ggagagaaaa gtatacggtg cataagtgat tctaaaggac gtggatcttg gcgtggacct
     3721 cccccacagt gcataaaatc tcctcctgtg actcactgcc ctaatccaga agtcacacat
     3781 ggatataagc tgaataaaac tcgttcttca tattcccaca atgacatagt acatgtcgcc
     3841 tgtgatcccg gcttcatcat gaatgggagt cacttgatta ggtgtcatac tgacaacaaa
     3901 tgggtgccag ctgtaccaac ttgtatcaaa aaggctttct taggatgtca acatccgttt
     3961 aagatccccc acggaaatca taccggtgga gacatagctc gattttctcc cggaatgtca
     4021 atcctgtata gctgcaacca aggctacctg cttgtaggag aggcagtcct tctttgcaca
     4081 catgagggaa cctggaacgg acctgtccct tattgcaaag aggtgaactg tagcttccca
     4141 gatcatataa atggaatcca gagtaggctg gagcctggaa aaatgtatca gtatggagct
     4201 gtcatcactt tagaatgtga agatggatat accctagaag gcagtcccca gagccagtgt
     4261 caggaagatc accgatggaa ccctcccctg gctgtttgca aatccccaag ctcacttgtt
     4321 cctcttattt gtggtttttc ggcaggggta gtcactcttt tctgcttggg tgctatcacc
     4381 ttacgcatga tattaaaaca cagagaacgc aattactata caaatgcaag ccgtaaagaa
     4441 gacgttcatt tagaaacact ggaagtatat tctgttgatc catacaacct agcaaactaa
     4501 tcaaaagaca aactgtatgc cttgttgctt ggaacccaac tgaacattgg ttggagagaa
     4561 acctaatatc agcaagtctg ttggcatggt ctcaacatca gtgagattat ttcataagtt
     4621 ttagctccta tatgcactta gcctcaagca gaacaaagaa aatttgcttg atgataaaga
     4681 tggaagccca gttttactgc tacgtgctct tcaaggactt cttgaagcct cacctgtgac
     4741 atatttggag ccaggctatg gatataaaca gttaaatagc tctgaaaatt gtcacctttt
     4801 ccaggaaggc actaaaaaga gctgtccttg tgtctagact cttcttttta taatcagcat
     4861 actcactgtt accatatact tttggttgta gtgtggttta aattatttaa gcaaagtatg
     4921 aagcatatcc tgcggttatg atgggcatac attttggggg aagtctgatt ttattttaat
     4981 aggagtatct ttctctgata tagttaaaca tttcactttt atttcctctt ggtttgagtt
     5041 tttctcatcg tatatacttt gcctttgcat aatcgctcag taattccaat ttgcacaatt
     5101 tttgtaaatt atgggagtca agttttaatt ctgaagttta attctgaagt aactgtagtt
     5161 gcttgtaaaa tgtcatttga taatgtgtac attcatcagt caaataaatg ttgtctt
//
LOCUS       XM_032645852            5040 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus complement C3d receptor 2 (CR2),
            transcript variant X2, mRNA.
ACCESSION   XM_032645852
VERSION     XM_032645852.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5040
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5040
                     /gene="CR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760650"
     CDS             85..4323
                     /gene="CR2"
                     /codon_start=1
                     /product="complement receptor type 2 isoform X2"
                     /protein_id="XP_032501743.1"
                     /db_xref="GeneID:116760650"
                     /translation="MGASGPLWVFLAFAVPGVLGQCKFLPRYPFAKPKIQSDQSEFAV
                     GTTWQYECLPGYVKRSFFITCLETSKWSDAQPVCKRKSCVSPRELLHGSVLAPRGIVF
                     GSTITYSCDKGYRLIGDSSATCIISDNIVTWDKEMPFCESIPCESPPAISNGDFYSSS
                     SEDFYYGMVVTYKCHVGQNGKKLFDLVGEKSIYCTSKDNRIGIWSSPPPRCIPVVKCP
                     IPEVENGIMESGFRRSFSLNDSVMFKCKPGFTMKGSNTVWCQPNSKWNPPLPRCFKGC
                     LPPPHIYHGNYNKLDEEFFAVGQEVFYSCEPGYTLIGTNPMQCTSLGTWRHPAPNCEA
                     KSCGAIPDQLLNGHVVAPPNLQLGAEVAFVCDKGYRLNGQSSSQCVSEGMRVLWNNKF
                     PVCERIFCDPPPPIKNGRNSYHSSPIAVNSVVRYSCLSAFRLIGESILFCITKDNVNG
                     IWDKAAPICEYYNKNSICSEPIVPGGYRNKMSRPPYRHGDSVTFTCKTNFTMKGNKTV
                     WCQANKTWGPTPLPTCESDISLECPSLPTIANGYHTGESVDSFAPGLSVTYSCEPGYL
                     LLGEKTIRCLSSGDWSAVAPTCKEAECELPGPLLNGQLKRPASLRVGATVNFFCSEGY
                     RLQGQPSSQCVIVGQRTFWTKFPVCEEILCPPPPPILNGTHTGSSSVNVRYGSTVTYT
                     CDQGPEQGVNFILTGERTIRCTTDSQKTGTWSGPAPRCELSVSEVRCPPPQILRGQIS
                     SGQKDQYSYNDTVVFACVFGFTMKGSKGIRCNAQGTWEPSVPVCEKDCQAPPKILHGQ
                     KEDRHMIRFDPGTSIKYSCDPGYVLVGEESIHCTSEGVWIPTAPTCKVTECEPIGKQV
                     FKKPKNQLIRLDVNSSCDEGYRLSESVYQQCQGRIPWFMEIRLCKDITCPPPPVIYNG
                     VHTGSSSDVLYGTTVTYTCNPGPERGVKFNLIGESTIRCTSNDQETGIWSGPAPLCKL
                     SLPAVQCSHVHVANGYKISSKEAPYFYNDSVIFKCNNGFTLKGSSQVRCKANNTWDPD
                     IPVCEKEAPCQPLKEGLQDVPVGSPVVPVNMSCQHGYKLTGHAYRKCQDDKNRVWFQK
                     ILLCKVIHCQPPPVINNGRHRGVMTEHFLYGNEVSYECDQGFYLLGEKSIRCISDSKG
                     RGSWRGPPPQCIKSPPVTHCPNPEVTHGYKLNKTRSSYSHNDIVHVACDPGFIMNGSH
                     LIRCHTDNKWVPAVPTCIKKAFLGCQHPFKIPHGNHTGGDIARFSPGMSILYSCNQGY
                     LLVGEAVLLCTHEGTWNGPVPYCKEVNCSFPDHINGIQSRLEPGKMYQYGAVITLECE
                     DGYTLEGSPQSQCQEDHRWNPPLAVCKSPSSLVPLICGFSAGVVTLFCLGAITLRMIL
                     KHRERNYYTNASRKEDVHLETLEVYSVDPYNLAN"
     misc_feature    112..906
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    967..1656
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    1729..2436
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    2242..3186
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    <3268..3753
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    <3550..4122
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 cgtcttctcc agccctgtca tcccggagct gccggaggct cgcgggtctc agacgcatcc
       61 agccgctggg gctgcagcct tggcatgggc gcctcgggtc cgctctgggt tttcttggct
      121 ttcgccgtgc caggggtcct cggtcagtgt aagttcctgc caaggtatcc ttttgctaag
      181 cctaaaattc agagtgatca gtctgagttt gctgttggga caacttggca atatgaatgt
      241 cttcctgggt atgtcaagag gtcattcttt atcacctgcc tagaaacctc caagtggtca
      301 gatgctcagc cagtctgtaa acgtaaatca tgtgtgagtc ctagagaact cctccatggc
      361 tctgtccttg cacccagggg tatcgtgttt gggtcaacaa ttacatattc ttgtgataaa
      421 ggatatcgac tcattggtga ctcctctgcc acatgtatta tctcagacaa tattgtaacc
      481 tgggataagg aaatgccttt ttgtgaatct attccttgtg agtcaccccc agccatctcc
      541 aatggagact tttacagcag cagtagcgag gacttttact atggaatggt ggttacttat
      601 aagtgccatg ttggacagaa tgggaaaaag ctgtttgacc tcgtgggtga aaagtcaata
      661 tactgcacca gcaaagacaa tcgaattggc atctggagca gccctccccc tcggtgtatt
      721 cctgtagtca aatgcccaat tccggaagtt gaaaatggaa ttatggaatc tggatttaga
      781 cgctcatttt ccttaaatga ttctgtgatg tttaagtgta agcccggctt taccatgaaa
      841 ggcagcaaca cagtatggtg ccaaccaaac agcaaatgga accctccact gccaaggtgc
      901 ttcaaggggt gtctaccacc tccacatatc taccacggta attataacaa attggatgag
      961 gaattctttg cagttggaca ggaagtgttc tacagctgtg agcctggcta tactctcatt
     1021 ggaactaacc ctatgcagtg tacctccttg ggaacctgga ggcatccagc ccccaactgt
     1081 gaagcaaaat catgtggtgc cattccagac caacttctca acggtcatgt ggtagctcct
     1141 cctaatctcc agcttggggc agaggttgca tttgtttgtg ataaggggta ccggttaaat
     1201 ggccaatctt ctagtcagtg tgtctcagaa ggaatgagag tactctggaa taataagttt
     1261 cctgtctgtg aacggatttt ttgtgaccct cctcctccta tcaaaaatgg gcggaatagt
     1321 tatcattcta gtcccatagc tgttaactct gtggtgaggt acagttgctt gagtgccttc
     1381 cgcctcattg gagaaagtat tcttttttgt ataactaaag acaatgtaaa tggaatctgg
     1441 gataaagctg ctcctatctg tgaatattac aataaaaatt ctatttgctc tgagcccata
     1501 gtaccaggtg gatacagaaa taaaatgtct agaccaccat acagacatgg tgattctgtg
     1561 acatttacct gtaagaccaa cttcaccatg aaaggaaaca aaactgtttg gtgccaagca
     1621 aataaaacat ggggaccaac accactacca acctgtgaga gtgatatctc cctggagtgt
     1681 ccatcacttc ccacaatcgc caacgggtat cacacagggg agagcgttga ttcctttgcc
     1741 ccaggattgt ctgtgaccta cagctgtgaa cctggttact tgcttcttgg agaaaagacc
     1801 attcgctgtt tgtcttcggg agactggagt gctgtcgctc ccacatgtaa agaggcagag
     1861 tgtgagcttc caggaccatt gctcaatggg cagttaaaga ggcccgcaag tcttcgggtt
     1921 ggtgcaactg tgaacttttt ctgtagtgaa gggtatcgat tacaaggcca accttctagc
     1981 cagtgtgtaa ttgttggaca gcgtactttt tggaccaaat ttccagtatg tgaagaaatt
     2041 ctttgcccac cacctcctcc tattctcaat ggaacacata cgggcagctc ttcagtgaat
     2101 gttcggtatg gaagcacagt cacttacacc tgtgaccagg gcccagagca aggagtgaac
     2161 ttcattctca ctggggagag aactatccgt tgtaccactg atagtcagaa gactgggacc
     2221 tggagcggcc ctgccccacg ctgtgaactt tctgtttctg aggttcggtg tccacctccc
     2281 cagatcctaa gaggccaaat atcatccggg cagaaagatc aatattccta taatgacact
     2341 gtggtatttg cctgcgtatt tggcttcacc atgaagggca gcaagggaat ccgatgtaat
     2401 gcccaaggca catgggaacc atcggtacca gtctgtgaaa aggattgtca agctcctcct
     2461 aaaatcctcc atgggcaaaa ggaagataga cacatgattc gctttgaccc tggaacatcc
     2521 ataaaatata gctgcgaccc tggctatgtg ctggtgggag aagaatccat acattgtacc
     2581 tctgagggag tgtggatacc cactgccccc acatgcaaag tgacagaatg tgaacctata
     2641 ggaaagcaag tctttaaaaa acccaagaac caacttatta gactagatgt caactcttct
     2701 tgtgatgaag ggtaccggct aagcgagagt gtttatcagc agtgccaagg cagaattcct
     2761 tggtttatgg agattcgtct ctgtaaagat atcacctgcc caccaccccc tgttatctac
     2821 aatggagtac acacagggag ttcctcagat gtcctatatg gtaccacagt cacttacaca
     2881 tgtaaccccg ggccagagag aggagtgaag ttcaacctca ttggggagag caccatccgt
     2941 tgtacaagca acgatcaaga gacgggcatc tggagtggcc ccgctcctct ctgtaaactt
     3001 tccctccctg ctgttcagtg ctcacatgtc cacgttgcaa atggatacaa gatatctagc
     3061 aaggaagccc catatttcta caatgacagt gtgatattca agtgtaataa tggatttact
     3121 ttgaagggca gcagtcaggt tcgttgcaaa gccaataaca cctgggatcc tgacatacca
     3181 gtttgtgaaa aagaagcacc atgccaacct ttgaaagaag gtcttcaaga tgttccagtt
     3241 ggttcacctg tggtaccagt taatatgtcc tgccaacatg ggtacaagtt gactggacat
     3301 gcttatcgga aatgtcaaga tgataagaat agggtttggt tccaaaagat tctactttgt
     3361 aaagttatcc actgtcaacc tccaccagtg attaacaatg ggaggcacag gggtgtaatg
     3421 acagaacact ttctgtatgg aaatgaagtc tcttatgaat gtgaccaagg attctatctt
     3481 ctgggagaga aaagtatacg gtgcataagt gattctaaag gacgtggatc ttggcgtgga
     3541 cctcccccac agtgcataaa atctcctcct gtgactcact gccctaatcc agaagtcaca
     3601 catggatata agctgaataa aactcgttct tcatattccc acaatgacat agtacatgtc
     3661 gcctgtgatc ccggcttcat catgaatggg agtcacttga ttaggtgtca tactgacaac
     3721 aaatgggtgc cagctgtacc aacttgtatc aaaaaggctt tcttaggatg tcaacatccg
     3781 tttaagatcc cccacggaaa tcataccggt ggagacatag ctcgattttc tcccggaatg
     3841 tcaatcctgt atagctgcaa ccaaggctac ctgcttgtag gagaggcagt ccttctttgc
     3901 acacatgagg gaacctggaa cggacctgtc ccttattgca aagaggtgaa ctgtagcttc
     3961 ccagatcata taaatggaat ccagagtagg ctggagcctg gaaaaatgta tcagtatgga
     4021 gctgtcatca ctttagaatg tgaagatgga tataccctag aaggcagtcc ccagagccag
     4081 tgtcaggaag atcaccgatg gaaccctccc ctggctgttt gcaaatcccc aagctcactt
     4141 gttcctctta tttgtggttt ttcggcaggg gtagtcactc ttttctgctt gggtgctatc
     4201 accttacgca tgatattaaa acacagagaa cgcaattact atacaaatgc aagccgtaaa
     4261 gaagacgttc atttagaaac actggaagta tattctgttg atccatacaa cctagcaaac
     4321 taatcaaaag acaaactgta tgccttgttg cttggaaccc aactgaacat tggttggaga
     4381 gaaacctaat atcagcaagt ctgttggcat ggtctcaaca tcagtgagat tatttcataa
     4441 gttttagctc ctatatgcac ttagcctcaa gcagaacaaa gaaaatttgc ttgatgataa
     4501 agatggaagc ccagttttac tgctacgtgc tcttcaagga cttcttgaag cctcacctgt
     4561 gacatatttg gagccaggct atggatataa acagttaaat agctctgaaa attgtcacct
     4621 tttccaggaa ggcactaaaa agagctgtcc ttgtgtctag actcttcttt ttataatcag
     4681 catactcact gttaccatat acttttggtt gtagtgtggt ttaaattatt taagcaaagt
     4741 atgaagcata tcctgcggtt atgatgggca tacattttgg gggaagtctg attttatttt
     4801 aataggagta tctttctctg atatagttaa acatttcact tttatttcct cttggtttga
     4861 gtttttctca tcgtatatac tttgcctttg cataatcgct cagtaattcc aatttgcaca
     4921 atttttgtaa attatgggag tcaagtttta attctgaagt ttaattctga agtaactgta
     4981 gttgcttgta aaatgtcatt tgataatgtg tacattcatc agtcaaataa atgttgtctt
//
LOCUS       XM_032645858            4086 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus complement C3d receptor 2 (CR2),
            transcript variant X3, mRNA.
ACCESSION   XM_032645858
VERSION     XM_032645858.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4086
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4086
                     /gene="CR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760650"
     CDS             85..3369
                     /gene="CR2"
                     /codon_start=1
                     /product="complement receptor type 2 isoform X3"
                     /protein_id="XP_032501749.1"
                     /db_xref="GeneID:116760650"
                     /translation="MGASGPLWVFLAFAVPGVLGIFCDPPPPIKNGRNSYHSSPIAVN
                     SVVRYSCLSAFRLIGESILFCITKDNVNGIWDKAAPICEYYNKNSICSEPIVPGGYRN
                     KMSRPPYRHGDSVTFTCKTNFTMKGNKTVWCQANKTWGPTPLPTCESDISLECPSLPT
                     IANGYHTGESVDSFAPGLSVTYSCEPGYLLLGEKTIRCLSSGDWSAVAPTCKEAECEL
                     PGPLLNGQLKRPASLRVGATVNFFCSEGYRLQGQPSSQCVIVGQRTFWTKFPVCEEIL
                     CPPPPPILNGTHTGSSSVNVRYGSTVTYTCDQGPEQGVNFILTGERTIRCTTDSQKTG
                     TWSGPAPRCELSVSEVRCPPPQILRGQISSGQKDQYSYNDTVVFACVFGFTMKGSKGI
                     RCNAQGTWEPSVPVCEKDCQAPPKILHGQKEDRHMIRFDPGTSIKYSCDPGYVLVGEE
                     SIHCTSEGVWIPTAPTCKVTECEPIGKQVFKKPKNQLIRLDVNSSCDEGYRLSESVYQ
                     QCQGRIPWFMEIRLCKDITCPPPPVIYNGVHTGSSSDVLYGTTVTYTCNPGPERGVKF
                     NLIGESTIRCTSNDQETGIWSGPAPLCKLSLPAVQCSHVHVANGYKISSKEAPYFYND
                     SVIFKCNNGFTLKGSSQVRCKANNTWDPDIPVCEKGCQPPSGLHHGRHTGGNRVLFVS
                     GMTVDYTCDPGYLLVGNRSVHCMPSGNWSPSAPRCEEAPCQPLKEGLQDVPVGSPVVP
                     VNMSCQHGYKLTGHAYRKCQDDKNRVWFQKILLCKVIHCQPPPVINNGRHRGVMTEHF
                     LYGNEVSYECDQGFYLLGEKSIRCISDSKGRGSWRGPPPQCIKSPPVTHCPNPEVTHG
                     YKLNKTRSSYSHNDIVHVACDPGFIMNGSHLIRCHTDNKWVPAVPTCIKKAFLGCQHP
                     FKIPHGNHTGGDIARFSPGMSILYSCNQGYLLVGEAVLLCTHEGTWNGPVPYCKEVNC
                     SFPDHINGIQSRLEPGKMYQYGAVITLECEDGYTLEGSPQSQCQEDHRWNPPLAVCKS
                     PSSLVPLICGFSAGVVTLFCLGAITLRMILKHRERNYYTNASRKEDVHLETLEVYSVD
                     PYNLAN"
     misc_feature    103..>717
                     /gene="CR2"
                     /note="EEV host range protein; Provisional; Region:
                     PHA02639"
                     /db_xref="CDD:165022"
     misc_feature    598..1305
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    1111..2055
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    2131..2799
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    <2596..3168
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 cgtcttctcc agccctgtca tcccggagct gccggaggct cgcgggtctc agacgcatcc
       61 agccgctggg gctgcagcct tggcatgggc gcctcgggtc cgctctgggt tttcttggct
      121 ttcgccgtgc caggggtcct cgggattttt tgtgaccctc ctcctcctat caaaaatggg
      181 cggaatagtt atcattctag tcccatagct gttaactctg tggtgaggta cagttgcttg
      241 agtgccttcc gcctcattgg agaaagtatt cttttttgta taactaaaga caatgtaaat
      301 ggaatctggg ataaagctgc tcctatctgt gaatattaca ataaaaattc tatttgctct
      361 gagcccatag taccaggtgg atacagaaat aaaatgtcta gaccaccata cagacatggt
      421 gattctgtga catttacctg taagaccaac ttcaccatga aaggaaacaa aactgtttgg
      481 tgccaagcaa ataaaacatg gggaccaaca ccactaccaa cctgtgagag tgatatctcc
      541 ctggagtgtc catcacttcc cacaatcgcc aacgggtatc acacagggga gagcgttgat
      601 tcctttgccc caggattgtc tgtgacctac agctgtgaac ctggttactt gcttcttgga
      661 gaaaagacca ttcgctgttt gtcttcggga gactggagtg ctgtcgctcc cacatgtaaa
      721 gaggcagagt gtgagcttcc aggaccattg ctcaatgggc agttaaagag gcccgcaagt
      781 cttcgggttg gtgcaactgt gaactttttc tgtagtgaag ggtatcgatt acaaggccaa
      841 ccttctagcc agtgtgtaat tgttggacag cgtacttttt ggaccaaatt tccagtatgt
      901 gaagaaattc tttgcccacc acctcctcct attctcaatg gaacacatac gggcagctct
      961 tcagtgaatg ttcggtatgg aagcacagtc acttacacct gtgaccaggg cccagagcaa
     1021 ggagtgaact tcattctcac tggggagaga actatccgtt gtaccactga tagtcagaag
     1081 actgggacct ggagcggccc tgccccacgc tgtgaacttt ctgtttctga ggttcggtgt
     1141 ccacctcccc agatcctaag aggccaaata tcatccgggc agaaagatca atattcctat
     1201 aatgacactg tggtatttgc ctgcgtattt ggcttcacca tgaagggcag caagggaatc
     1261 cgatgtaatg cccaaggcac atgggaacca tcggtaccag tctgtgaaaa ggattgtcaa
     1321 gctcctccta aaatcctcca tgggcaaaag gaagatagac acatgattcg ctttgaccct
     1381 ggaacatcca taaaatatag ctgcgaccct ggctatgtgc tggtgggaga agaatccata
     1441 cattgtacct ctgagggagt gtggataccc actgccccca catgcaaagt gacagaatgt
     1501 gaacctatag gaaagcaagt ctttaaaaaa cccaagaacc aacttattag actagatgtc
     1561 aactcttctt gtgatgaagg gtaccggcta agcgagagtg tttatcagca gtgccaaggc
     1621 agaattcctt ggtttatgga gattcgtctc tgtaaagata tcacctgccc accaccccct
     1681 gttatctaca atggagtaca cacagggagt tcctcagatg tcctatatgg taccacagtc
     1741 acttacacat gtaaccccgg gccagagaga ggagtgaagt tcaacctcat tggggagagc
     1801 accatccgtt gtacaagcaa cgatcaagag acgggcatct ggagtggccc cgctcctctc
     1861 tgtaaacttt ccctccctgc tgttcagtgc tcacatgtcc acgttgcaaa tggatacaag
     1921 atatctagca aggaagcccc atatttctac aatgacagtg tgatattcaa gtgtaataat
     1981 ggatttactt tgaagggcag cagtcaggtt cgttgcaaag ccaataacac ctgggatcct
     2041 gacataccag tttgtgaaaa aggctgtcag ccaccttctg ggctccacca tggtcggcat
     2101 acaggtggaa atagggtcct ctttgtctct gggatgactg tagactacac ctgtgatcct
     2161 ggctacttgc ttgtgggaaa cagatccgtt cactgtatgc cttcaggaaa ttggagtcct
     2221 tctgcccctc ggtgtgaaga agcaccatgc caacctttga aagaaggtct tcaagatgtt
     2281 ccagttggtt cacctgtggt accagttaat atgtcctgcc aacatgggta caagttgact
     2341 ggacatgctt atcggaaatg tcaagatgat aagaataggg tttggttcca aaagattcta
     2401 ctttgtaaag ttatccactg tcaacctcca ccagtgatta acaatgggag gcacaggggt
     2461 gtaatgacag aacactttct gtatggaaat gaagtctctt atgaatgtga ccaaggattc
     2521 tatcttctgg gagagaaaag tatacggtgc ataagtgatt ctaaaggacg tggatcttgg
     2581 cgtggacctc ccccacagtg cataaaatct cctcctgtga ctcactgccc taatccagaa
     2641 gtcacacatg gatataagct gaataaaact cgttcttcat attcccacaa tgacatagta
     2701 catgtcgcct gtgatcccgg cttcatcatg aatgggagtc acttgattag gtgtcatact
     2761 gacaacaaat gggtgccagc tgtaccaact tgtatcaaaa aggctttctt aggatgtcaa
     2821 catccgttta agatccccca cggaaatcat accggtggag acatagctcg attttctccc
     2881 ggaatgtcaa tcctgtatag ctgcaaccaa ggctacctgc ttgtaggaga ggcagtcctt
     2941 ctttgcacac atgagggaac ctggaacgga cctgtccctt attgcaaaga ggtgaactgt
     3001 agcttcccag atcatataaa tggaatccag agtaggctgg agcctggaaa aatgtatcag
     3061 tatggagctg tcatcacttt agaatgtgaa gatggatata ccctagaagg cagtccccag
     3121 agccagtgtc aggaagatca ccgatggaac cctcccctgg ctgtttgcaa atccccaagc
     3181 tcacttgttc ctcttatttg tggtttttcg gcaggggtag tcactctttt ctgcttgggt
     3241 gctatcacct tacgcatgat attaaaacac agagaacgca attactatac aaatgcaagc
     3301 cgtaaagaag acgttcattt agaaacactg gaagtatatt ctgttgatcc atacaaccta
     3361 gcaaactaat caaaagacaa actgtatgcc ttgttgcttg gaacccaact gaacattggt
     3421 tggagagaaa cctaatatca gcaagtctgt tggcatggtc tcaacatcag tgagattatt
     3481 tcataagttt tagctcctat atgcacttag cctcaagcag aacaaagaaa atttgcttga
     3541 tgataaagat ggaagcccag ttttactgct acgtgctctt caaggacttc ttgaagcctc
     3601 acctgtgaca tatttggagc caggctatgg atataaacag ttaaatagct ctgaaaattg
     3661 tcaccttttc caggaaggca ctaaaaagag ctgtccttgt gtctagactc ttctttttat
     3721 aatcagcata ctcactgtta ccatatactt ttggttgtag tgtggtttaa attatttaag
     3781 caaagtatga agcatatcct gcggttatga tgggcataca ttttggggga agtctgattt
     3841 tattttaata ggagtatctt tctctgatat agttaaacat ttcactttta tttcctcttg
     3901 gtttgagttt ttctcatcgt atatactttg cctttgcata atcgctcagt aattccaatt
     3961 tgcacaattt ttgtaaatta tgggagtcaa gttttaattc tgaagtttaa ttctgaagta
     4021 actgtagttg cttgtaaaat gtcatttgat aatgtgtaca ttcatcagtc aaataaatgt
     4081 tgtctt
//
LOCUS       XM_032645865            3909 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus complement C3d receptor 2 (CR2),
            transcript variant X4, mRNA.
ACCESSION   XM_032645865
VERSION     XM_032645865.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3909
                     /gene="CR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760650"
     CDS             85..3192
                     /gene="CR2"
                     /codon_start=1
                     /product="complement receptor type 2 isoform X4"
                     /protein_id="XP_032501756.1"
                     /db_xref="GeneID:116760650"
                     /translation="MGASGPLWVFLAFAVPGVLGIFCDPPPPIKNGRNSYHSSPIAVN
                     SVVRYSCLSAFRLIGESILFCITKDNVNGIWDKAAPICEYYNKNSICSEPIVPGGYRN
                     KMSRPPYRHGDSVTFTCKTNFTMKGNKTVWCQANKTWGPTPLPTCESDISLECPSLPT
                     IANGYHTGESVDSFAPGLSVTYSCEPGYLLLGEKTIRCLSSGDWSAVAPTCKEAECEL
                     PGPLLNGQLKRPASLRVGATVNFFCSEGYRLQGQPSSQCVIVGQRTFWTKFPVCEEIL
                     CPPPPPILNGTHTGSSSVNVRYGSTVTYTCDQGPEQGVNFILTGERTIRCTTDSQKTG
                     TWSGPAPRCELSVSEVRCPPPQILRGQISSGQKDQYSYNDTVVFACVFGFTMKGSKGI
                     RCNAQGTWEPSVPVCEKDCQAPPKILHGQKEDRHMIRFDPGTSIKYSCDPGYVLVGEE
                     SIHCTSEGVWIPTAPTCKVTECEPIGKQVFKKPKNQLIRLDVNSSCDEGYRLSESVYQ
                     QCQGRIPWFMEIRLCKDITCPPPPVIYNGVHTGSSSDVLYGTTVTYTCNPGPERGVKF
                     NLIGESTIRCTSNDQETGIWSGPAPLCKLSLPAVQCSHVHVANGYKISSKEAPYFYND
                     SVIFKCNNGFTLKGSSQVRCKANNTWDPDIPVCEKEAPCQPLKEGLQDVPVGSPVVPV
                     NMSCQHGYKLTGHAYRKCQDDKNRVWFQKILLCKVIHCQPPPVINNGRHRGVMTEHFL
                     YGNEVSYECDQGFYLLGEKSIRCISDSKGRGSWRGPPPQCIKSPPVTHCPNPEVTHGY
                     KLNKTRSSYSHNDIVHVACDPGFIMNGSHLIRCHTDNKWVPAVPTCIKKAFLGCQHPF
                     KIPHGNHTGGDIARFSPGMSILYSCNQGYLLVGEAVLLCTHEGTWNGPVPYCKEVNCS
                     FPDHINGIQSRLEPGKMYQYGAVITLECEDGYTLEGSPQSQCQEDHRWNPPLAVCKSP
                     SSLVPLICGFSAGVVTLFCLGAITLRMILKHRERNYYTNASRKEDVHLETLEVYSVDP
                     YNLAN"
     misc_feature    103..>717
                     /gene="CR2"
                     /note="EEV host range protein; Provisional; Region:
                     PHA02639"
                     /db_xref="CDD:165022"
     misc_feature    598..1305
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    1111..2055
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    <2137..2622
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    <2419..2991
                     /gene="CR2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 cgtcttctcc agccctgtca tcccggagct gccggaggct cgcgggtctc agacgcatcc
       61 agccgctggg gctgcagcct tggcatgggc gcctcgggtc cgctctgggt tttcttggct
      121 ttcgccgtgc caggggtcct cgggattttt tgtgaccctc ctcctcctat caaaaatggg
      181 cggaatagtt atcattctag tcccatagct gttaactctg tggtgaggta cagttgcttg
      241 agtgccttcc gcctcattgg agaaagtatt cttttttgta taactaaaga caatgtaaat
      301 ggaatctggg ataaagctgc tcctatctgt gaatattaca ataaaaattc tatttgctct
      361 gagcccatag taccaggtgg atacagaaat aaaatgtcta gaccaccata cagacatggt
      421 gattctgtga catttacctg taagaccaac ttcaccatga aaggaaacaa aactgtttgg
      481 tgccaagcaa ataaaacatg gggaccaaca ccactaccaa cctgtgagag tgatatctcc
      541 ctggagtgtc catcacttcc cacaatcgcc aacgggtatc acacagggga gagcgttgat
      601 tcctttgccc caggattgtc tgtgacctac agctgtgaac ctggttactt gcttcttgga
      661 gaaaagacca ttcgctgttt gtcttcggga gactggagtg ctgtcgctcc cacatgtaaa
      721 gaggcagagt gtgagcttcc aggaccattg ctcaatgggc agttaaagag gcccgcaagt
      781 cttcgggttg gtgcaactgt gaactttttc tgtagtgaag ggtatcgatt acaaggccaa
      841 ccttctagcc agtgtgtaat tgttggacag cgtacttttt ggaccaaatt tccagtatgt
      901 gaagaaattc tttgcccacc acctcctcct attctcaatg gaacacatac gggcagctct
      961 tcagtgaatg ttcggtatgg aagcacagtc acttacacct gtgaccaggg cccagagcaa
     1021 ggagtgaact tcattctcac tggggagaga actatccgtt gtaccactga tagtcagaag
     1081 actgggacct ggagcggccc tgccccacgc tgtgaacttt ctgtttctga ggttcggtgt
     1141 ccacctcccc agatcctaag aggccaaata tcatccgggc agaaagatca atattcctat
     1201 aatgacactg tggtatttgc ctgcgtattt ggcttcacca tgaagggcag caagggaatc
     1261 cgatgtaatg cccaaggcac atgggaacca tcggtaccag tctgtgaaaa ggattgtcaa
     1321 gctcctccta aaatcctcca tgggcaaaag gaagatagac acatgattcg ctttgaccct
     1381 ggaacatcca taaaatatag ctgcgaccct ggctatgtgc tggtgggaga agaatccata
     1441 cattgtacct ctgagggagt gtggataccc actgccccca catgcaaagt gacagaatgt
     1501 gaacctatag gaaagcaagt ctttaaaaaa cccaagaacc aacttattag actagatgtc
     1561 aactcttctt gtgatgaagg gtaccggcta agcgagagtg tttatcagca gtgccaaggc
     1621 agaattcctt ggtttatgga gattcgtctc tgtaaagata tcacctgccc accaccccct
     1681 gttatctaca atggagtaca cacagggagt tcctcagatg tcctatatgg taccacagtc
     1741 acttacacat gtaaccccgg gccagagaga ggagtgaagt tcaacctcat tggggagagc
     1801 accatccgtt gtacaagcaa cgatcaagag acgggcatct ggagtggccc cgctcctctc
     1861 tgtaaacttt ccctccctgc tgttcagtgc tcacatgtcc acgttgcaaa tggatacaag
     1921 atatctagca aggaagcccc atatttctac aatgacagtg tgatattcaa gtgtaataat
     1981 ggatttactt tgaagggcag cagtcaggtt cgttgcaaag ccaataacac ctgggatcct
     2041 gacataccag tttgtgaaaa agaagcacca tgccaacctt tgaaagaagg tcttcaagat
     2101 gttccagttg gttcacctgt ggtaccagtt aatatgtcct gccaacatgg gtacaagttg
     2161 actggacatg cttatcggaa atgtcaagat gataagaata gggtttggtt ccaaaagatt
     2221 ctactttgta aagttatcca ctgtcaacct ccaccagtga ttaacaatgg gaggcacagg
     2281 ggtgtaatga cagaacactt tctgtatgga aatgaagtct cttatgaatg tgaccaagga
     2341 ttctatcttc tgggagagaa aagtatacgg tgcataagtg attctaaagg acgtggatct
     2401 tggcgtggac ctcccccaca gtgcataaaa tctcctcctg tgactcactg ccctaatcca
     2461 gaagtcacac atggatataa gctgaataaa actcgttctt catattccca caatgacata
     2521 gtacatgtcg cctgtgatcc cggcttcatc atgaatggga gtcacttgat taggtgtcat
     2581 actgacaaca aatgggtgcc agctgtacca acttgtatca aaaaggcttt cttaggatgt
     2641 caacatccgt ttaagatccc ccacggaaat cataccggtg gagacatagc tcgattttct
     2701 cccggaatgt caatcctgta tagctgcaac caaggctacc tgcttgtagg agaggcagtc
     2761 cttctttgca cacatgaggg aacctggaac ggacctgtcc cttattgcaa agaggtgaac
     2821 tgtagcttcc cagatcatat aaatggaatc cagagtaggc tggagcctgg aaaaatgtat
     2881 cagtatggag ctgtcatcac tttagaatgt gaagatggat ataccctaga aggcagtccc
     2941 cagagccagt gtcaggaaga tcaccgatgg aaccctcccc tggctgtttg caaatcccca
     3001 agctcacttg ttcctcttat ttgtggtttt tcggcagggg tagtcactct tttctgcttg
     3061 ggtgctatca ccttacgcat gatattaaaa cacagagaac gcaattacta tacaaatgca
     3121 agccgtaaag aagacgttca tttagaaaca ctggaagtat attctgttga tccatacaac
     3181 ctagcaaact aatcaaaaga caaactgtat gccttgttgc ttggaaccca actgaacatt
     3241 ggttggagag aaacctaata tcagcaagtc tgttggcatg gtctcaacat cagtgagatt
     3301 atttcataag ttttagctcc tatatgcact tagcctcaag cagaacaaag aaaatttgct
     3361 tgatgataaa gatggaagcc cagttttact gctacgtgct cttcaaggac ttcttgaagc
     3421 ctcacctgtg acatatttgg agccaggcta tggatataaa cagttaaata gctctgaaaa
     3481 ttgtcacctt ttccaggaag gcactaaaaa gagctgtcct tgtgtctaga ctcttctttt
     3541 tataatcagc atactcactg ttaccatata cttttggttg tagtgtggtt taaattattt
     3601 aagcaaagta tgaagcatat cctgcggtta tgatgggcat acattttggg ggaagtctga
     3661 ttttatttta ataggagtat ctttctctga tatagttaaa catttcactt ttatttcctc
     3721 ttggtttgag tttttctcat cgtatatact ttgcctttgc ataatcgctc agtaattcca
     3781 atttgcacaa tttttgtaaa ttatgggagt caagttttaa ttctgaagtt taattctgaa
     3841 gtaactgtag ttgcttgtaa aatgtcattt gataatgtgt acattcatca gtcaaataaa
     3901 tgttgtctt
//
LOCUS       XM_032645876            2822 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus complement receptor type 1-like
            (LOC116760667), mRNA.
ACCESSION   XM_032645876
VERSION     XM_032645876.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2822
                     /gene="LOC116760667"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760667"
     CDS             57..2663
                     /gene="LOC116760667"
                     /codon_start=1
                     /product="complement receptor type 1-like"
                     /protein_id="XP_032501767.1"
                     /db_xref="GeneID:116760667"
                     /translation="MGATSPRSREPLLPPAFPTFCPGGALLAVLVLLALPPAWGQCQS
                     PVHLTFAMPTELIDKDEFPVGTSLKYKCRLGYYRRVFSITCLQNSVWSSPENNCRRKS
                     CGSLPDLINGKMDINKDTQFGSTVNYFCNEGYRLIGKSSAECIISGNSVTWDNDPPIC
                     ESIPCGPPPAIANGDFINTNREYFQYGTVVTYRCNLGERRQKLFDLVGEPSIYCTSED
                     NRVGIWSGPPPQCIAPNKCTPPVIENGIRMSENKSLFSLRESVRFRCQPGFAMKGPST
                     VECQAQNKWGPKLPSCSRVCQPPPKVPHGKHTPSHKNNFSSGQEVFYSCEPGYDLRGA
                     ASLHCTPQGDWSPSAPKCAVKSCADFLDQLPNGHVLFPLNFQLGAKVSFVCDEGFHLK
                     GRSASYCVLVGMEILWNSSVPVCEQILCPNPPDILNGRHTGKPLEVFPFGKEVTYTCD
                     PHPERGMNFSLTGESTIRCTSDSQGNGIWSSPAPRCGLPGHCNTPDHFQFAKLKIQTN
                     ESEFPIGTSLKYECRPEYHRKSFSITCLQNLTWSSAKDVCKRKSCNTPPDPVNGVVHI
                     DTDTQFGSRINFSCNRGYQLIGHSTAECIISGSTVFWDSEPPICERIRCGPPPAIANG
                     DFISTNREYFQYGTVVTYRCSLGERRQKLFDLVGEPSIYCTSEDNRVGIWSGPPPQCI
                     APNKCTPPVIENGIRMSENKSLFSLRESVRFRCQPGFAMKGPSTVECQAQNKWGPELP
                     SCSRVCQPPPEVLHGKHTPSHRNNFSSGQEVFYSCEPGYDLRGAASLHCTPQGDWSPE
                     APRCAVKSCAAFLDQLPNGHVLFPLNFHLGAKVSFICDEGFQLKGSSASYCILVGTKS
                     LWNNSVPVCERK"
     misc_feature    189..938
                     /gene="LOC116760667"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    996..>1514
                     /gene="LOC116760667"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    1512..2288
                     /gene="LOC116760667"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    1956..2657
                     /gene="LOC116760667"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 gactgacttc gattttctcc gagatcgcat ctggttacta gaggcccttg gggacgatgg
       61 gagccacttc tccgaggagc cgggagcctc tcctgccgcc agcgttccct accttctgcc
      121 ccggaggagc cctcctggcg gttctggtgc tgctcgcgct gccgccggcc tggggtcaat
      181 gccaatcccc ggtgcacctt acattcgcca tgcctacaga actgattgac aaagatgagt
      241 ttcctgttgg gacatctttg aagtataaat gccgccttgg ttactacaga agagtgttct
      301 ctatcacctg cctgcaaaac tctgtctggt caagccctga aaacaactgt aggcgtaaat
      361 catgtggatc tcttccagat ctcataaatg gcaaaatgga catcaacaaa gacacccagt
      421 ttggatcaac tgttaattat ttttgtaatg aaggataccg actcattggt aaatcctctg
      481 ctgaatgcat catctctggc aactctgtca cctgggataa tgacccacct atttgtgaga
      541 gcattccttg tgggccaccc ccagccatcg ccaatggaga tttcattaac accaacagag
      601 aatactttca atacggaaca gtggtgacct atcgctgcaa tcttggggag agaaggcaga
      661 agctgtttga cctcgtgggg gagccgtcaa tatattgcac cagtgaagac aatcgagttg
      721 gcatctggag tggccctccc cctcagtgca ttgcacctaa taaatgcacg cctccagtca
      781 ttgaaaatgg aataaggatg tctgagaaca aaagcttatt ttctttacgt gaaagcgtga
      841 ggtttaggtg tcagcctggc tttgccatga aaggaccctc cactgttgaa tgccaggccc
      901 aaaacaagtg ggggccgaag ttgcccagct gctccagggt atgtcagcca cctccaaaag
      961 tcccgcatgg taaacacacc ccaagccaca agaacaactt ttcttctgga caggaagtgt
     1021 tctacagctg tgagcctggc tatgatctca gaggggctgc ttctctgcat tgtacgcccc
     1081 agggagactg gagcccgtca gcccccaaat gtgcagtgaa atcatgtgct gacttcctgg
     1141 accagttacc taatggacat gtcctctttc cacttaattt ccagcttgga gcaaaagtat
     1201 ccttcgtttg tgatgaggga ttccacttaa aaggccgttc tgctagttac tgtgtcttgg
     1261 ttggaatgga aatcctttgg aacagcagcg ttcctgtgtg tgaacaaatc ttgtgtccaa
     1321 atcctcctga tatccttaat gggagacaca caggaaaacc tctggaagtc tttccttttg
     1381 gaaaagaagt cacttacaca tgtgacccgc acccagagag agggatgaac ttcagcctca
     1441 ctggggagag caccatccgc tgtaccagtg acagtcaagg gaacggaatt tggagcagcc
     1501 ctgcccctcg ctgtggactt ccgggtcact gtaacacccc agatcatttt caatttgcca
     1561 agttgaaaat ccagaccaat gaatctgagt ttcccattgg gacatcttta aagtatgaat
     1621 gccgccctga gtaccacagg aagtcattct ctatcacgtg tctacaaaac ctcacgtggt
     1681 caagtgccaa agatgtctgt aaacgtaaat catgtaatac tcctccagat cctgtgaatg
     1741 gtgtggtgca catagataca gacacccagt tcggatccag aatcaatttt tcttgtaata
     1801 gagggtatca actcattggt cactcaactg ctgaatgtat catctcaggc agtactgtct
     1861 tttgggattc agagccacca atttgtgaac gcattcgttg tgggccaccc ccagccatcg
     1921 ccaatggaga tttcattagc accaacagag aatactttca atacggaaca gtggtgacct
     1981 atcgctgcag tcttggagag agaaggcaga agctgtttga cctcgtgggt gagccgtcaa
     2041 tatattgcac cagtgaagac aatcgagttg gcatctggag tggccctccc cctcagtgca
     2101 ttgcacctaa taaatgcacg cctccagtca ttgaaaatgg aataaggatg tctgagaaca
     2161 aaagcttatt ttctttacgt gaaagcgtga ggtttaggtg tcagcccggc tttgccatga
     2221 aaggaccctc cactgttgaa tgccaggccc aaaacaagtg ggggccagag ttgcccagct
     2281 gctccagggt atgtcagcca cctccagaag tcctgcatgg taaacacact ccaagccaca
     2341 ggaacaactt ttcctctggg caggaagtgt tctacagctg tgagcccggc tatgatctca
     2401 gaggggctgc ttctctgcac tgtacgcccc agggagactg gagcccagaa gctcccagat
     2461 gtgcagtgaa atcatgtgct gccttcctgg accaacttcc taatggacat gtgctctttc
     2521 cacttaattt ccaccttggg gcaaaagtgt ccttcatttg tgatgagggg ttccagttaa
     2581 agggaagctc ggccagttac tgtatcttgg ttggaacgaa aagcctttgg aataacagtg
     2641 ttcctgtgtg tgaacgtaag tagaaagaat atctgttcag gtctgcatct ttctccttgt
     2701 ttttttcatt ttcttattgc attttaccac atgaaattat ctaatgtctg tccctctgtt
     2761 tattttgttt ttgatacaaa tatttattgt tgaaatagtt acaaagaatg tttttttggg
     2821 gc
//
LOCUS       XM_032645891            3794 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760669), transcript variant X1, mRNA.
ACCESSION   XM_032645891
VERSION     XM_032645891.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3794
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3794
                     /gene="LOC116760669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 42 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760669"
     CDS             134..1405
                     /gene="LOC116760669"
                     /codon_start=1
                     /product="membrane cofactor protein-like isoform X1"
                     /protein_id="XP_032501782.1"
                     /db_xref="GeneID:116760669"
                     /translation="MTASCSSRKAPPYRSESPFSSRCFVGILLVALLFLLPISSDACG
                     EPPRYESMRLQGVPKPSYRPGDSIQYECRPGYQPKRPSLPTTAVCQHDSMWSLLQEAC
                     TRKQCPNLGDPPNGQVHYPNGSILFGSEAHYVCNVGYFLIGPSILYCDISGSTVDWSD
                     NPPVCEKILCKPPEKILNGKYTNSHKDIFEYSEVVTYSCDASNGTDQYSLVGESKLVC
                     IGNDKWSSDPPQCKVVKCVYPHVENGMMVSGHGPKFYYKATVVYRCNEGFKLNGSNTI
                     ICSANSTWDPEIPTCIKESTTPSTQPPISSASVSTPPSSQPPISSASVSTPPSSQPPI
                     SSVSDSKPTHPTTTLGSSHPGYPSPSDEPPPKDAESLGAGIIVGIVIGALFGVVVVVC
                     SIRFCFHKKKKRKEGIATYSAYQDKATTPAE"
     misc_feature    314..1012
                     /gene="LOC116760669"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 ggtgcggccc aggccacgcc cagctgcgag accaaggttg aaggtttgtg agtgcgtgga
       61 ttcttgtctc tggtaactgg actcagaaag atctctgctg agctgtttca ggtttctcgc
      121 tgatctcccg aaaatgacgg cgtcttgctc ctctcgcaag gcacccccct accgctccga
      181 gagtcccttt tcttctaggt gcttcgttgg gattcttttg gtggcgctac tgttcctgct
      241 tcccatatcc tccgatgcct gtggtgagcc accaaggtat gaatctatgc ggctccaggg
      301 tgtccctaaa cccagttata ggcctgggga cagtatacag tatgaatgtc gcccaggtta
      361 ccagcccaag cgtccttctc ttcctactac tgctgtttgt cagcatgata gtatgtggtc
      421 acttctccag gaggcctgta caagaaaaca gtgtcctaac ctaggggatc ccccaaatgg
      481 ccaagtacac tacccaaatg gaagtattct gtttggctca gaggctcatt atgtttgtaa
      541 tgttggttat ttcttaattg gaccaagtat tctatactgt gacatttctg gaagtactgt
      601 ggactggagt gataatcctc cagtatgtga aaagattttg tgtaaaccac ctgaaaaaat
      661 tctaaatgga aaatacacaa atagccacaa agatatattt gaatacagtg aagtagtaac
      721 ttatagttgt gatgcttcaa atggaacaga tcaatattca cttgttggag agagcaagct
      781 tgtttgtatt ggaaatgaca aatggagtag tgaccctcct cagtgtaaag tggtcaaatg
      841 tgtatatcca catgttgaaa atggaatgat ggtctcagga catggaccaa aattttacta
      901 caaagcaacg gttgtatata gatgcaatga gggttttaag cttaatggca gcaacacaat
      961 tatctgtagt gcaaacagta cgtgggaccc tgagatacca acatgtatta aagagtcaac
     1021 tactcctagt acccaacctc caatttccag tgcctcagtg tcaactcctc ccagttccca
     1081 acctccaatt tccagtgcct cagtgtcaac tcctcccagt tcccaacctc caatttccag
     1141 tgtctcagat tccaagccta ctcatccaac tacgactctg gggtcaagtc atccaggata
     1201 tcccagtccc agtgatgaac caccacctaa agatgctgag agtttaggtg caggaatcat
     1261 tgttggaatt gtcattggtg cactttttgg tgttgtagta gttgtctgca gcatccgctt
     1321 ctgttttcac aaaaagaaga aaaggaaaga aggtattgct acatacagcg cataccagga
     1381 taaggcgacc actccagcag agtagatgaa ctaaatggtt tccacaaacc catgtatcat
     1441 tcagctatga aaatgaagga aatcctacca tttgagacaa tacagatgga ccttgagggc
     1501 attatgctgg gtgaataagt catatgaaga aaggcaagta ctgtgtgatc tcacttatat
     1561 gtggaatcca ataaaacaag cttatagaaa aagaaatcag atttaccttt atcagaggtg
     1621 gtgggctggg ggtggcagtt gagtaaaggc agtcagaaaa tataaacttc caattataag
     1681 ataaaaacgt actgggatgt aatgtacagc atagtgacta cagttagtaa cactgtattg
     1741 tattttggca agttgctaat gagaaagtgg atcttaaaac ttcttttttt ttttttttta
     1801 acatctttat tggggtataa ttgctttaca atggtgtgtc agcttctgcc ttacaacaaa
     1861 gtgaatcagc tatacataca cacatgcccc catgtgtctt ccctcctgcg tctccctccc
     1921 gatcttaaaa cttctaatca catggaagaa aaaaattttt ttgtaggtac atgaagtgat
     1981 ggatgttaac taaatttatc gtgtaatcat tttgcaatat atacatgatc aaatcatgct
     2041 gtacacctta aacttatgca gtgttatatg tcagttatat ttcagtactg aaaaaaaatc
     2101 tataaaaatt atttgctagt ttcttacact gtcaggaatg gaactgttaa gctatagtgc
     2161 taacatttta atgtggctga agtacagtca ccatcattta atgcttcttt gaaatgtgta
     2221 tgaatttgtg tttgaatatc ttgcttgttt ttccttaaat aacgcttgta tttataggac
     2281 aagttaacac agtatcgcga ctagtgttaa ggtggggaaa tattttttct ataaaatctc
     2341 caaactcaga gaactataat tcaaaatgac attacatttc atttgtaaag aaagtgattt
     2401 tgaaatcttt tctgttcaaa gatgattgcc aactcttaaa attcattctt caacaatccc
     2461 aaaatatgca ttatatattg tttattataa aagtttgatt tccttaacta agaatattac
     2521 cggaaaatac tcttacagtt cataggttaa aatactattt taaaaaattt gtaacctctt
     2581 ggtgatttaa agatgctata aagtttattt ctggcatttg ttcttcaccc cttttaataa
     2641 caataaacca gtctaagaaa tcaagaagaa ttcagcatca gttgcatgct tctgtacaaa
     2701 gttagagggc ttctaacacc catagcagga atgccagctc aggacaaagt gaacactgtg
     2761 gacttgtagt tttcttcaaa agaattccac tctttaagag aattagaatc cattctaaat
     2821 tctgtttttc tctccccacc tgaataaaga gatgtcttac tttaaacatg tcatctgaat
     2881 gtaggcagtt ttgtagggaa taaattcatc agataacctc aagttgcatt agaatctgag
     2941 tctcacctca tctgtaaagg gcagagtaaa aatgaagccc catatttcag aaaagcaaac
     3001 ttaactttgt agatttgctg taggtcatgc aaagggatgg aaagaagaaa gagctcaggt
     3061 agctcttgac gctcaggtgg gacagatccc agccctcttc tctgtcctca caccaggcag
     3121 ggcctccttc aaataagcca gcggccaaag aggagggact gtctctctaa ctccaattac
     3181 atttttacat gttttgttcc acacttttat agttagtagc acaaactggg ccaaagaaac
     3241 gttgccttag aaatatatga ataaagaatc aagagtgaac cggagtaaat attgttttac
     3301 tccctaagga catgtttgta aggccatgta agtggtcctt ccctttgtag tctctggtga
     3361 ggcactttag gaagataaat ttgaggagaa ttcaggaatt ctgaggtaaa taatagagtt
     3421 gaagttttgc tgtacccttt tccacataat ttttgagaat ctagcacttg cttagaagca
     3481 agggggtggc tatagtacat atttttaaaa ccctcaaaga agtgttttca accaaggatt
     3541 attatgctta ccaaaataaa ttgactttca tagtatagtt tccacttcaa aattagtttt
     3601 tctaatttat ttatatgtaa gattgaaata tgtgtgtaca tataaattat gttctgtttg
     3661 tcaaataatt tgtcaaatat atggggacac catttttctc tagaaatgtt tatttaaatg
     3721 agagagggaa aagtgtattt taatttaaag ctttcttaaa actgcatttt gagcattgga
     3781 ccttcagatc tatt
//
LOCUS       XM_032645901            3749 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760669), transcript variant X2, mRNA.
ACCESSION   XM_032645901
VERSION     XM_032645901.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3749
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3749
                     /gene="LOC116760669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 42 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760669"
     CDS             134..1360
                     /gene="LOC116760669"
                     /codon_start=1
                     /product="membrane cofactor protein-like isoform X2"
                     /protein_id="XP_032501792.1"
                     /db_xref="GeneID:116760669"
                     /translation="MTASCSSRKAPPYRSESPFSSRCFVGILLVALLFLLPISSDACG
                     EPPRYESMRLQGVPKPSYRPGDSIQYECRPGYQPKRPSLPTTAVCQHDSMWSLLQEAC
                     TRKQCPNLGDPPNGQVHYPNGSILFGSEAHYVCNVGYFLIGPSILYCDISGSTVDWSD
                     NPPVCEKILCKPPEKILNGKYTNSHKDIFEYSEVVTYSCDASNGTDQYSLVGESKLVC
                     IGNDKWSSDPPQCKVVKCVYPHVENGMMVSGHGPKFYYKATVVYRCNEGFKLNGSNTI
                     ICSANSTWDPEIPTCIKESTTPSTQPPISSASVSTPPSSQPPISSVSDSKPTHPTTTL
                     GSSHPGYPSPSDEPPPKDAESLGAGIIVGIVIGALFGVVVVVCSIRFCFHKKKKRKEG
                     IATYSAYQDKATTPAE"
     misc_feature    314..1012
                     /gene="LOC116760669"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 ggtgcggccc aggccacgcc cagctgcgag accaaggttg aaggtttgtg agtgcgtgga
       61 ttcttgtctc tggtaactgg actcagaaag atctctgctg agctgtttca ggtttctcgc
      121 tgatctcccg aaaatgacgg cgtcttgctc ctctcgcaag gcacccccct accgctccga
      181 gagtcccttt tcttctaggt gcttcgttgg gattcttttg gtggcgctac tgttcctgct
      241 tcccatatcc tccgatgcct gtggtgagcc accaaggtat gaatctatgc ggctccaggg
      301 tgtccctaaa cccagttata ggcctgggga cagtatacag tatgaatgtc gcccaggtta
      361 ccagcccaag cgtccttctc ttcctactac tgctgtttgt cagcatgata gtatgtggtc
      421 acttctccag gaggcctgta caagaaaaca gtgtcctaac ctaggggatc ccccaaatgg
      481 ccaagtacac tacccaaatg gaagtattct gtttggctca gaggctcatt atgtttgtaa
      541 tgttggttat ttcttaattg gaccaagtat tctatactgt gacatttctg gaagtactgt
      601 ggactggagt gataatcctc cagtatgtga aaagattttg tgtaaaccac ctgaaaaaat
      661 tctaaatgga aaatacacaa atagccacaa agatatattt gaatacagtg aagtagtaac
      721 ttatagttgt gatgcttcaa atggaacaga tcaatattca cttgttggag agagcaagct
      781 tgtttgtatt ggaaatgaca aatggagtag tgaccctcct cagtgtaaag tggtcaaatg
      841 tgtatatcca catgttgaaa atggaatgat ggtctcagga catggaccaa aattttacta
      901 caaagcaacg gttgtatata gatgcaatga gggttttaag cttaatggca gcaacacaat
      961 tatctgtagt gcaaacagta cgtgggaccc tgagatacca acatgtatta aagagtcaac
     1021 tactcctagt acccaacctc caatttccag tgcctcagtg tcaactcctc ccagttccca
     1081 acctccaatt tccagtgtct cagattccaa gcctactcat ccaactacga ctctggggtc
     1141 aagtcatcca ggatatccca gtcccagtga tgaaccacca cctaaagatg ctgagagttt
     1201 aggtgcagga atcattgttg gaattgtcat tggtgcactt tttggtgttg tagtagttgt
     1261 ctgcagcatc cgcttctgtt ttcacaaaaa gaagaaaagg aaagaaggta ttgctacata
     1321 cagcgcatac caggataagg cgaccactcc agcagagtag atgaactaaa tggtttccac
     1381 aaacccatgt atcattcagc tatgaaaatg aaggaaatcc taccatttga gacaatacag
     1441 atggaccttg agggcattat gctgggtgaa taagtcatat gaagaaaggc aagtactgtg
     1501 tgatctcact tatatgtgga atccaataaa acaagcttat agaaaaagaa atcagattta
     1561 cctttatcag aggtggtggg ctgggggtgg cagttgagta aaggcagtca gaaaatataa
     1621 acttccaatt ataagataaa aacgtactgg gatgtaatgt acagcatagt gactacagtt
     1681 agtaacactg tattgtattt tggcaagttg ctaatgagaa agtggatctt aaaacttctt
     1741 tttttttttt ttttaacatc tttattgggg tataattgct ttacaatggt gtgtcagctt
     1801 ctgccttaca acaaagtgaa tcagctatac atacacacat gcccccatgt gtcttccctc
     1861 ctgcgtctcc ctcccgatct taaaacttct aatcacatgg aagaaaaaaa tttttttgta
     1921 ggtacatgaa gtgatggatg ttaactaaat ttatcgtgta atcattttgc aatatataca
     1981 tgatcaaatc atgctgtaca ccttaaactt atgcagtgtt atatgtcagt tatatttcag
     2041 tactgaaaaa aaatctataa aaattatttg ctagtttctt acactgtcag gaatggaact
     2101 gttaagctat agtgctaaca ttttaatgtg gctgaagtac agtcaccatc atttaatgct
     2161 tctttgaaat gtgtatgaat ttgtgtttga atatcttgct tgtttttcct taaataacgc
     2221 ttgtatttat aggacaagtt aacacagtat cgcgactagt gttaaggtgg ggaaatattt
     2281 tttctataaa atctccaaac tcagagaact ataattcaaa atgacattac atttcatttg
     2341 taaagaaagt gattttgaaa tcttttctgt tcaaagatga ttgccaactc ttaaaattca
     2401 ttcttcaaca atcccaaaat atgcattata tattgtttat tataaaagtt tgatttcctt
     2461 aactaagaat attaccggaa aatactctta cagttcatag gttaaaatac tattttaaaa
     2521 aatttgtaac ctcttggtga tttaaagatg ctataaagtt tatttctggc atttgttctt
     2581 cacccctttt aataacaata aaccagtcta agaaatcaag aagaattcag catcagttgc
     2641 atgcttctgt acaaagttag agggcttcta acacccatag caggaatgcc agctcaggac
     2701 aaagtgaaca ctgtggactt gtagttttct tcaaaagaat tccactcttt aagagaatta
     2761 gaatccattc taaattctgt ttttctctcc ccacctgaat aaagagatgt cttactttaa
     2821 acatgtcatc tgaatgtagg cagttttgta gggaataaat tcatcagata acctcaagtt
     2881 gcattagaat ctgagtctca cctcatctgt aaagggcaga gtaaaaatga agccccatat
     2941 ttcagaaaag caaacttaac tttgtagatt tgctgtaggt catgcaaagg gatggaaaga
     3001 agaaagagct caggtagctc ttgacgctca ggtgggacag atcccagccc tcttctctgt
     3061 cctcacacca ggcagggcct ccttcaaata agccagcggc caaagaggag ggactgtctc
     3121 tctaactcca attacatttt tacatgtttt gttccacact tttatagtta gtagcacaaa
     3181 ctgggccaaa gaaacgttgc cttagaaata tatgaataaa gaatcaagag tgaaccggag
     3241 taaatattgt tttactccct aaggacatgt ttgtaaggcc atgtaagtgg tccttccctt
     3301 tgtagtctct ggtgaggcac tttaggaaga taaatttgag gagaattcag gaattctgag
     3361 gtaaataata gagttgaagt tttgctgtac ccttttccac ataatttttg agaatctagc
     3421 acttgcttag aagcaagggg gtggctatag tacatatttt taaaaccctc aaagaagtgt
     3481 tttcaaccaa ggattattat gcttaccaaa ataaattgac tttcatagta tagtttccac
     3541 ttcaaaatta gtttttctaa tttatttata tgtaagattg aaatatgtgt gtacatataa
     3601 attatgttct gtttgtcaaa taatttgtca aatatatggg gacaccattt ttctctagaa
     3661 atgtttattt aaatgagaga gggaaaagtg tattttaatt taaagctttc ttaaaactgc
     3721 attttgagca ttggaccttc agatctatt
//
LOCUS       XM_032645911            3745 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760669), transcript variant X3, mRNA.
ACCESSION   XM_032645911
VERSION     XM_032645911.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3745
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3745
                     /gene="LOC116760669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 42 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760669"
     CDS             133..1356
                     /gene="LOC116760669"
                     /codon_start=1
                     /product="membrane cofactor protein-like isoform X3"
                     /protein_id="XP_032501802.1"
                     /db_xref="GeneID:116760669"
                     /translation="MTASCSSRKAPPYRSESPFSSRCFVGILLVALLFLLPISSDACG
                     EPPRYESMRLQGVPKPSYRPGDSIQYECRPGYQPKRPSLPTTAVCQHDSMWSLLQEAC
                     TRKQCPNLGDPPNGQVHYPNGSILFGSEAHYVCNVGYFLIGPSILYCDISGSTVDWSD
                     NPPVCEKILCKPPEKILNGKYTNSHKDIFEYSEVVTYSCDASNGTDQYSLVGESKLVC
                     IGNDKWSSDPPQCKVVKCVYPHVENGMMVSGHGPKFYYKATVVYRCNEGFKLNGSNTI
                     ICSANSTWDPEIPTCIKESTTPSTQPPISSASVSTPPSSQPPISSASVSTPPSSQPPI
                     SSVSGYPSPSDEPPPKDAESLGAGIIVGIVIGALFGVVVVVCSIRFCFHKKKKRKEGI
                     ATYSAYQDKATTPAE"
     misc_feature    313..1011
                     /gene="LOC116760669"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 gtgcggccca ggccacgccc agctgcgaga ccaaggttga aggtttgtga gtgcgtggat
       61 tcttgtctct ggtaactgga ctcagaaaga tctctgctga gctgtttcag gtttctcgct
      121 gatctcccga aaatgacggc gtcttgctcc tctcgcaagg caccccccta ccgctccgag
      181 agtccctttt cttctaggtg cttcgttggg attcttttgg tggcgctact gttcctgctt
      241 cccatatcct ccgatgcctg tggtgagcca ccaaggtatg aatctatgcg gctccagggt
      301 gtccctaaac ccagttatag gcctggggac agtatacagt atgaatgtcg cccaggttac
      361 cagcccaagc gtccttctct tcctactact gctgtttgtc agcatgatag tatgtggtca
      421 cttctccagg aggcctgtac aagaaaacag tgtcctaacc taggggatcc cccaaatggc
      481 caagtacact acccaaatgg aagtattctg tttggctcag aggctcatta tgtttgtaat
      541 gttggttatt tcttaattgg accaagtatt ctatactgtg acatttctgg aagtactgtg
      601 gactggagtg ataatcctcc agtatgtgaa aagattttgt gtaaaccacc tgaaaaaatt
      661 ctaaatggaa aatacacaaa tagccacaaa gatatatttg aatacagtga agtagtaact
      721 tatagttgtg atgcttcaaa tggaacagat caatattcac ttgttggaga gagcaagctt
      781 gtttgtattg gaaatgacaa atggagtagt gaccctcctc agtgtaaagt ggtcaaatgt
      841 gtatatccac atgttgaaaa tggaatgatg gtctcaggac atggaccaaa attttactac
      901 aaagcaacgg ttgtatatag atgcaatgag ggttttaagc ttaatggcag caacacaatt
      961 atctgtagtg caaacagtac gtgggaccct gagataccaa catgtattaa agagtcaact
     1021 actcctagta cccaacctcc aatttccagt gcctcagtgt caactcctcc cagttcccaa
     1081 cctccaattt ccagtgcctc agtgtcaact cctcccagtt cccaacctcc aatttccagt
     1141 gtctcaggat atcccagtcc cagtgatgaa ccaccaccta aagatgctga gagtttaggt
     1201 gcaggaatca ttgttggaat tgtcattggt gcactttttg gtgttgtagt agttgtctgc
     1261 agcatccgct tctgttttca caaaaagaag aaaaggaaag aaggtattgc tacatacagc
     1321 gcataccagg ataaggcgac cactccagca gagtagatga actaaatggt ttccacaaac
     1381 ccatgtatca ttcagctatg aaaatgaagg aaatcctacc atttgagaca atacagatgg
     1441 accttgaggg cattatgctg ggtgaataag tcatatgaag aaaggcaagt actgtgtgat
     1501 ctcacttata tgtggaatcc aataaaacaa gcttatagaa aaagaaatca gatttacctt
     1561 tatcagaggt ggtgggctgg gggtggcagt tgagtaaagg cagtcagaaa atataaactt
     1621 ccaattataa gataaaaacg tactgggatg taatgtacag catagtgact acagttagta
     1681 acactgtatt gtattttggc aagttgctaa tgagaaagtg gatcttaaaa cttctttttt
     1741 tttttttttt aacatcttta ttggggtata attgctttac aatggtgtgt cagcttctgc
     1801 cttacaacaa agtgaatcag ctatacatac acacatgccc ccatgtgtct tccctcctgc
     1861 gtctccctcc cgatcttaaa acttctaatc acatggaaga aaaaaatttt tttgtaggta
     1921 catgaagtga tggatgttaa ctaaatttat cgtgtaatca ttttgcaata tatacatgat
     1981 caaatcatgc tgtacacctt aaacttatgc agtgttatat gtcagttata tttcagtact
     2041 gaaaaaaaat ctataaaaat tatttgctag tttcttacac tgtcaggaat ggaactgtta
     2101 agctatagtg ctaacatttt aatgtggctg aagtacagtc accatcattt aatgcttctt
     2161 tgaaatgtgt atgaatttgt gtttgaatat cttgcttgtt tttccttaaa taacgcttgt
     2221 atttatagga caagttaaca cagtatcgcg actagtgtta aggtggggaa atattttttc
     2281 tataaaatct ccaaactcag agaactataa ttcaaaatga cattacattt catttgtaaa
     2341 gaaagtgatt ttgaaatctt ttctgttcaa agatgattgc caactcttaa aattcattct
     2401 tcaacaatcc caaaatatgc attatatatt gtttattata aaagtttgat ttccttaact
     2461 aagaatatta ccggaaaata ctcttacagt tcataggtta aaatactatt ttaaaaaatt
     2521 tgtaacctct tggtgattta aagatgctat aaagtttatt tctggcattt gttcttcacc
     2581 ccttttaata acaataaacc agtctaagaa atcaagaaga attcagcatc agttgcatgc
     2641 ttctgtacaa agttagaggg cttctaacac ccatagcagg aatgccagct caggacaaag
     2701 tgaacactgt ggacttgtag ttttcttcaa aagaattcca ctctttaaga gaattagaat
     2761 ccattctaaa ttctgttttt ctctccccac ctgaataaag agatgtctta ctttaaacat
     2821 gtcatctgaa tgtaggcagt tttgtaggga ataaattcat cagataacct caagttgcat
     2881 tagaatctga gtctcacctc atctgtaaag ggcagagtaa aaatgaagcc ccatatttca
     2941 gaaaagcaaa cttaactttg tagatttgct gtaggtcatg caaagggatg gaaagaagaa
     3001 agagctcagg tagctcttga cgctcaggtg ggacagatcc cagccctctt ctctgtcctc
     3061 acaccaggca gggcctcctt caaataagcc agcggccaaa gaggagggac tgtctctcta
     3121 actccaatta catttttaca tgttttgttc cacactttta tagttagtag cacaaactgg
     3181 gccaaagaaa cgttgcctta gaaatatatg aataaagaat caagagtgaa ccggagtaaa
     3241 tattgtttta ctccctaagg acatgtttgt aaggccatgt aagtggtcct tccctttgta
     3301 gtctctggtg aggcacttta ggaagataaa tttgaggaga attcaggaat tctgaggtaa
     3361 ataatagagt tgaagttttg ctgtaccctt ttccacataa tttttgagaa tctagcactt
     3421 gcttagaagc aagggggtgg ctatagtaca tatttttaaa accctcaaag aagtgttttc
     3481 aaccaaggat tattatgctt accaaaataa attgactttc atagtatagt ttccacttca
     3541 aaattagttt ttctaattta tttatatgta agattgaaat atgtgtgtac atataaatta
     3601 tgttctgttt gtcaaataat ttgtcaaata tatggggaca ccatttttct ctagaaatgt
     3661 ttatttaaat gagagaggga aaagtgtatt ttaatttaaa gctttcttaa aactgcattt
     3721 tgagcattgg accttcagat ctatt
//
LOCUS       XM_032645919            3838 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760669), transcript variant X4, mRNA.
ACCESSION   XM_032645919
VERSION     XM_032645919.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3838
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3838
                     /gene="LOC116760669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 42 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760669"
     CDS             134..1354
                     /gene="LOC116760669"
                     /codon_start=1
                     /product="membrane cofactor protein-like isoform X4"
                     /protein_id="XP_032501810.1"
                     /db_xref="GeneID:116760669"
                     /translation="MTASCSSRKAPPYRSESPFSSRCFVGILLVALLFLLPISSDACG
                     EPPRYESMRLQGVPKPSYRPGDSIQYECRPGYQPKRPSLPTTAVCQHDSMWSLLQEAC
                     TRKQCPNLGDPPNGQVHYPNGSILFGSEAHYVCNVGYFLIGPSILYCDISGSTVDWSD
                     NPPVCEKILCKPPEKILNGKYTNSHKDIFEYSEVVTYSCDASNGTDQYSLVGESKLVC
                     IGNDKWSSDPPQCKVVKCVYPHVENGMMVSGHGPKFYYKATVVYRCNEGFKLNGSNTI
                     ICSANSTWDPEIPTCIKESTTPSTQPPISSASVSTPPSSQPPISSASVSTPPSSQPPI
                     SSVSDSKPTHPTTTLGSSHPGYPSPSDEPPPKDAESLGAGIIVGIVIGALFGVVVVVC
                     SIRFCFHKKKKRLQ"
     misc_feature    314..1012
                     /gene="LOC116760669"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 ggtgcggccc aggccacgcc cagctgcgag accaaggttg aaggtttgtg agtgcgtgga
       61 ttcttgtctc tggtaactgg actcagaaag atctctgctg agctgtttca ggtttctcgc
      121 tgatctcccg aaaatgacgg cgtcttgctc ctctcgcaag gcacccccct accgctccga
      181 gagtcccttt tcttctaggt gcttcgttgg gattcttttg gtggcgctac tgttcctgct
      241 tcccatatcc tccgatgcct gtggtgagcc accaaggtat gaatctatgc ggctccaggg
      301 tgtccctaaa cccagttata ggcctgggga cagtatacag tatgaatgtc gcccaggtta
      361 ccagcccaag cgtccttctc ttcctactac tgctgtttgt cagcatgata gtatgtggtc
      421 acttctccag gaggcctgta caagaaaaca gtgtcctaac ctaggggatc ccccaaatgg
      481 ccaagtacac tacccaaatg gaagtattct gtttggctca gaggctcatt atgtttgtaa
      541 tgttggttat ttcttaattg gaccaagtat tctatactgt gacatttctg gaagtactgt
      601 ggactggagt gataatcctc cagtatgtga aaagattttg tgtaaaccac ctgaaaaaat
      661 tctaaatgga aaatacacaa atagccacaa agatatattt gaatacagtg aagtagtaac
      721 ttatagttgt gatgcttcaa atggaacaga tcaatattca cttgttggag agagcaagct
      781 tgtttgtatt ggaaatgaca aatggagtag tgaccctcct cagtgtaaag tggtcaaatg
      841 tgtatatcca catgttgaaa atggaatgat ggtctcagga catggaccaa aattttacta
      901 caaagcaacg gttgtatata gatgcaatga gggttttaag cttaatggca gcaacacaat
      961 tatctgtagt gcaaacagta cgtgggaccc tgagatacca acatgtatta aagagtcaac
     1021 tactcctagt acccaacctc caatttccag tgcctcagtg tcaactcctc ccagttccca
     1081 acctccaatt tccagtgcct cagtgtcaac tcctcccagt tcccaacctc caatttccag
     1141 tgtctcagat tccaagccta ctcatccaac tacgactctg gggtcaagtc atccaggata
     1201 tcccagtccc agtgatgaac caccacctaa agatgctgag agtttaggtg caggaatcat
     1261 tgttggaatt gtcattggtg cactttttgg tgttgtagta gttgtctgca gcatccgctt
     1321 ctgttttcac aaaaagaaga aaaggttgca gtaaaactga tggggttaaa ctaaaagttg
     1381 ctgagaggga aagaaggtat tgctacatac agcgcatacc aggataaggc gaccactcca
     1441 gcagagtaga tgaactaaat ggtttccaca aacccatgta tcattcagct atgaaaatga
     1501 aggaaatcct accatttgag acaatacaga tggaccttga gggcattatg ctgggtgaat
     1561 aagtcatatg aagaaaggca agtactgtgt gatctcactt atatgtggaa tccaataaaa
     1621 caagcttata gaaaaagaaa tcagatttac ctttatcaga ggtggtgggc tgggggtggc
     1681 agttgagtaa aggcagtcag aaaatataaa cttccaatta taagataaaa acgtactggg
     1741 atgtaatgta cagcatagtg actacagtta gtaacactgt attgtatttt ggcaagttgc
     1801 taatgagaaa gtggatctta aaacttcttt tttttttttt tttaacatct ttattggggt
     1861 ataattgctt tacaatggtg tgtcagcttc tgccttacaa caaagtgaat cagctataca
     1921 tacacacatg cccccatgtg tcttccctcc tgcgtctccc tcccgatctt aaaacttcta
     1981 atcacatgga agaaaaaaat ttttttgtag gtacatgaag tgatggatgt taactaaatt
     2041 tatcgtgtaa tcattttgca atatatacat gatcaaatca tgctgtacac cttaaactta
     2101 tgcagtgtta tatgtcagtt atatttcagt actgaaaaaa aatctataaa aattatttgc
     2161 tagtttctta cactgtcagg aatggaactg ttaagctata gtgctaacat tttaatgtgg
     2221 ctgaagtaca gtcaccatca tttaatgctt ctttgaaatg tgtatgaatt tgtgtttgaa
     2281 tatcttgctt gtttttcctt aaataacgct tgtatttata ggacaagtta acacagtatc
     2341 gcgactagtg ttaaggtggg gaaatatttt ttctataaaa tctccaaact cagagaacta
     2401 taattcaaaa tgacattaca tttcatttgt aaagaaagtg attttgaaat cttttctgtt
     2461 caaagatgat tgccaactct taaaattcat tcttcaacaa tcccaaaata tgcattatat
     2521 attgtttatt ataaaagttt gatttcctta actaagaata ttaccggaaa atactcttac
     2581 agttcatagg ttaaaatact attttaaaaa atttgtaacc tcttggtgat ttaaagatgc
     2641 tataaagttt atttctggca tttgttcttc acccctttta ataacaataa accagtctaa
     2701 gaaatcaaga agaattcagc atcagttgca tgcttctgta caaagttaga gggcttctaa
     2761 cacccatagc aggaatgcca gctcaggaca aagtgaacac tgtggacttg tagttttctt
     2821 caaaagaatt ccactcttta agagaattag aatccattct aaattctgtt tttctctccc
     2881 cacctgaata aagagatgtc ttactttaaa catgtcatct gaatgtaggc agttttgtag
     2941 ggaataaatt catcagataa cctcaagttg cattagaatc tgagtctcac ctcatctgta
     3001 aagggcagag taaaaatgaa gccccatatt tcagaaaagc aaacttaact ttgtagattt
     3061 gctgtaggtc atgcaaaggg atggaaagaa gaaagagctc aggtagctct tgacgctcag
     3121 gtgggacaga tcccagccct cttctctgtc ctcacaccag gcagggcctc cttcaaataa
     3181 gccagcggcc aaagaggagg gactgtctct ctaactccaa ttacattttt acatgttttg
     3241 ttccacactt ttatagttag tagcacaaac tgggccaaag aaacgttgcc ttagaaatat
     3301 atgaataaag aatcaagagt gaaccggagt aaatattgtt ttactcccta aggacatgtt
     3361 tgtaaggcca tgtaagtggt ccttcccttt gtagtctctg gtgaggcact ttaggaagat
     3421 aaatttgagg agaattcagg aattctgagg taaataatag agttgaagtt ttgctgtacc
     3481 cttttccaca taatttttga gaatctagca cttgcttaga agcaaggggg tggctatagt
     3541 acatattttt aaaaccctca aagaagtgtt ttcaaccaag gattattatg cttaccaaaa
     3601 taaattgact ttcatagtat agtttccact tcaaaattag tttttctaat ttatttatat
     3661 gtaagattga aatatgtgtg tacatataaa ttatgttctg tttgtcaaat aatttgtcaa
     3721 atatatgggg acaccatttt tctctagaaa tgtttattta aatgagagag ggaaaagtgt
     3781 attttaattt aaagctttct taaaactgca ttttgagcat tggaccttca gatctatt
//
LOCUS       XM_032645929            3700 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760669), transcript variant X5, mRNA.
ACCESSION   XM_032645929
VERSION     XM_032645929.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3700
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3700
                     /gene="LOC116760669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 42 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760669"
     CDS             133..1311
                     /gene="LOC116760669"
                     /codon_start=1
                     /product="membrane cofactor protein-like isoform X5"
                     /protein_id="XP_032501820.1"
                     /db_xref="GeneID:116760669"
                     /translation="MTASCSSRKAPPYRSESPFSSRCFVGILLVALLFLLPISSDACG
                     EPPRYESMRLQGVPKPSYRPGDSIQYECRPGYQPKRPSLPTTAVCQHDSMWSLLQEAC
                     TRKQCPNLGDPPNGQVHYPNGSILFGSEAHYVCNVGYFLIGPSILYCDISGSTVDWSD
                     NPPVCEKILCKPPEKILNGKYTNSHKDIFEYSEVVTYSCDASNGTDQYSLVGESKLVC
                     IGNDKWSSDPPQCKVVKCVYPHVENGMMVSGHGPKFYYKATVVYRCNEGFKLNGSNTI
                     ICSANSTWDPEIPTCIKESTTPSTQPPISSASVSTPPSSQPPISSVSGYPSPSDEPPP
                     KDAESLGAGIIVGIVIGALFGVVVVVCSIRFCFHKKKKRKEGIATYSAYQDKATTPAE
                     "
     misc_feature    313..1011
                     /gene="LOC116760669"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 gtgcggccca ggccacgccc agctgcgaga ccaaggttga aggtttgtga gtgcgtggat
       61 tcttgtctct ggtaactgga ctcagaaaga tctctgctga gctgtttcag gtttctcgct
      121 gatctcccga aaatgacggc gtcttgctcc tctcgcaagg caccccccta ccgctccgag
      181 agtccctttt cttctaggtg cttcgttggg attcttttgg tggcgctact gttcctgctt
      241 cccatatcct ccgatgcctg tggtgagcca ccaaggtatg aatctatgcg gctccagggt
      301 gtccctaaac ccagttatag gcctggggac agtatacagt atgaatgtcg cccaggttac
      361 cagcccaagc gtccttctct tcctactact gctgtttgtc agcatgatag tatgtggtca
      421 cttctccagg aggcctgtac aagaaaacag tgtcctaacc taggggatcc cccaaatggc
      481 caagtacact acccaaatgg aagtattctg tttggctcag aggctcatta tgtttgtaat
      541 gttggttatt tcttaattgg accaagtatt ctatactgtg acatttctgg aagtactgtg
      601 gactggagtg ataatcctcc agtatgtgaa aagattttgt gtaaaccacc tgaaaaaatt
      661 ctaaatggaa aatacacaaa tagccacaaa gatatatttg aatacagtga agtagtaact
      721 tatagttgtg atgcttcaaa tggaacagat caatattcac ttgttggaga gagcaagctt
      781 gtttgtattg gaaatgacaa atggagtagt gaccctcctc agtgtaaagt ggtcaaatgt
      841 gtatatccac atgttgaaaa tggaatgatg gtctcaggac atggaccaaa attttactac
      901 aaagcaacgg ttgtatatag atgcaatgag ggttttaagc ttaatggcag caacacaatt
      961 atctgtagtg caaacagtac gtgggaccct gagataccaa catgtattaa agagtcaact
     1021 actcctagta cccaacctcc aatttccagt gcctcagtgt caactcctcc cagttcccaa
     1081 cctccaattt ccagtgtctc aggatatccc agtcccagtg atgaaccacc acctaaagat
     1141 gctgagagtt taggtgcagg aatcattgtt ggaattgtca ttggtgcact ttttggtgtt
     1201 gtagtagttg tctgcagcat ccgcttctgt tttcacaaaa agaagaaaag gaaagaaggt
     1261 attgctacat acagcgcata ccaggataag gcgaccactc cagcagagta gatgaactaa
     1321 atggtttcca caaacccatg tatcattcag ctatgaaaat gaaggaaatc ctaccatttg
     1381 agacaataca gatggacctt gagggcatta tgctgggtga ataagtcata tgaagaaagg
     1441 caagtactgt gtgatctcac ttatatgtgg aatccaataa aacaagctta tagaaaaaga
     1501 aatcagattt acctttatca gaggtggtgg gctgggggtg gcagttgagt aaaggcagtc
     1561 agaaaatata aacttccaat tataagataa aaacgtactg ggatgtaatg tacagcatag
     1621 tgactacagt tagtaacact gtattgtatt ttggcaagtt gctaatgaga aagtggatct
     1681 taaaacttct tttttttttt tttttaacat ctttattggg gtataattgc tttacaatgg
     1741 tgtgtcagct tctgccttac aacaaagtga atcagctata catacacaca tgcccccatg
     1801 tgtcttccct cctgcgtctc cctcccgatc ttaaaacttc taatcacatg gaagaaaaaa
     1861 atttttttgt aggtacatga agtgatggat gttaactaaa tttatcgtgt aatcattttg
     1921 caatatatac atgatcaaat catgctgtac accttaaact tatgcagtgt tatatgtcag
     1981 ttatatttca gtactgaaaa aaaatctata aaaattattt gctagtttct tacactgtca
     2041 ggaatggaac tgttaagcta tagtgctaac attttaatgt ggctgaagta cagtcaccat
     2101 catttaatgc ttctttgaaa tgtgtatgaa tttgtgtttg aatatcttgc ttgtttttcc
     2161 ttaaataacg cttgtattta taggacaagt taacacagta tcgcgactag tgttaaggtg
     2221 gggaaatatt ttttctataa aatctccaaa ctcagagaac tataattcaa aatgacatta
     2281 catttcattt gtaaagaaag tgattttgaa atcttttctg ttcaaagatg attgccaact
     2341 cttaaaattc attcttcaac aatcccaaaa tatgcattat atattgttta ttataaaagt
     2401 ttgatttcct taactaagaa tattaccgga aaatactctt acagttcata ggttaaaata
     2461 ctattttaaa aaatttgtaa cctcttggtg atttaaagat gctataaagt ttatttctgg
     2521 catttgttct tcaccccttt taataacaat aaaccagtct aagaaatcaa gaagaattca
     2581 gcatcagttg catgcttctg tacaaagtta gagggcttct aacacccata gcaggaatgc
     2641 cagctcagga caaagtgaac actgtggact tgtagttttc ttcaaaagaa ttccactctt
     2701 taagagaatt agaatccatt ctaaattctg tttttctctc cccacctgaa taaagagatg
     2761 tcttacttta aacatgtcat ctgaatgtag gcagttttgt agggaataaa ttcatcagat
     2821 aacctcaagt tgcattagaa tctgagtctc acctcatctg taaagggcag agtaaaaatg
     2881 aagccccata tttcagaaaa gcaaacttaa ctttgtagat ttgctgtagg tcatgcaaag
     2941 ggatggaaag aagaaagagc tcaggtagct cttgacgctc aggtgggaca gatcccagcc
     3001 ctcttctctg tcctcacacc aggcagggcc tccttcaaat aagccagcgg ccaaagagga
     3061 gggactgtct ctctaactcc aattacattt ttacatgttt tgttccacac ttttatagtt
     3121 agtagcacaa actgggccaa agaaacgttg ccttagaaat atatgaataa agaatcaaga
     3181 gtgaaccgga gtaaatattg ttttactccc taaggacatg tttgtaaggc catgtaagtg
     3241 gtccttccct ttgtagtctc tggtgaggca ctttaggaag ataaatttga ggagaattca
     3301 ggaattctga ggtaaataat agagttgaag ttttgctgta cccttttcca cataattttt
     3361 gagaatctag cacttgctta gaagcaaggg ggtggctata gtacatattt ttaaaaccct
     3421 caaagaagtg ttttcaacca aggattatta tgcttaccaa aataaattga ctttcatagt
     3481 atagtttcca cttcaaaatt agtttttcta atttatttat atgtaagatt gaaatatgtg
     3541 tgtacatata aattatgttc tgtttgtcaa ataatttgtc aaatatatgg ggacaccatt
     3601 tttctctaga aatgtttatt taaatgagag agggaaaagt gtattttaat ttaaagcttt
     3661 cttaaaactg cattttgagc attggacctt cagatctatt
//
LOCUS       XM_032645939            3790 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760669), transcript variant X6, mRNA.
ACCESSION   XM_032645939
VERSION     XM_032645939.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3790
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3790
                     /gene="LOC116760669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 42 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760669"
     CDS             134..1306
                     /gene="LOC116760669"
                     /codon_start=1
                     /product="membrane cofactor protein-like isoform X6"
                     /protein_id="XP_032501830.1"
                     /db_xref="GeneID:116760669"
                     /translation="MTASCSSRKAPPYRSESPFSSRCFVGILLVALLFLLPISSDACG
                     EPPRYESMRLQGVPKPSYRPGDSIQYECRPGYQPKRPSLPTTAVCQHDSMWSLLQEAC
                     TRKQCPNLGDPPNGQVHYPNGSILFGSEAHYVCNVGYFLIGPSILYCDISGSTVDWSD
                     NPPVCEKILCKPPEKILNGKYTNSHKDIFEYSEVVTYSCDASNGTDQYSLVGESKLVC
                     IGNDKWSSDPPQCKVVKCVYPHVENGMMVSGHGPKFYYKATVVYRCNEGFKLNGSNTI
                     ICSANSTWDPEIPTCIKESTTPSTQPPISSASVSTPPSSQPPISSASVSTPPSSQPPI
                     SSVSGYPSPSDEPPPKDAESLGAGIIVGIVIGALFGVVVVVCSIRFCFHKKKKRLQ"
     misc_feature    314..1012
                     /gene="LOC116760669"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 ggtgcggccc aggccacgcc cagctgcgag accaaggttg aaggtttgtg agtgcgtgga
       61 ttcttgtctc tggtaactgg actcagaaag atctctgctg agctgtttca ggtttctcgc
      121 tgatctcccg aaaatgacgg cgtcttgctc ctctcgcaag gcacccccct accgctccga
      181 gagtcccttt tcttctaggt gcttcgttgg gattcttttg gtggcgctac tgttcctgct
      241 tcccatatcc tccgatgcct gtggtgagcc accaaggtat gaatctatgc ggctccaggg
      301 tgtccctaaa cccagttata ggcctgggga cagtatacag tatgaatgtc gcccaggtta
      361 ccagcccaag cgtccttctc ttcctactac tgctgtttgt cagcatgata gtatgtggtc
      421 acttctccag gaggcctgta caagaaaaca gtgtcctaac ctaggggatc ccccaaatgg
      481 ccaagtacac tacccaaatg gaagtattct gtttggctca gaggctcatt atgtttgtaa
      541 tgttggttat ttcttaattg gaccaagtat tctatactgt gacatttctg gaagtactgt
      601 ggactggagt gataatcctc cagtatgtga aaagattttg tgtaaaccac ctgaaaaaat
      661 tctaaatgga aaatacacaa atagccacaa agatatattt gaatacagtg aagtagtaac
      721 ttatagttgt gatgcttcaa atggaacaga tcaatattca cttgttggag agagcaagct
      781 tgtttgtatt ggaaatgaca aatggagtag tgaccctcct cagtgtaaag tggtcaaatg
      841 tgtatatcca catgttgaaa atggaatgat ggtctcagga catggaccaa aattttacta
      901 caaagcaacg gttgtatata gatgcaatga gggttttaag cttaatggca gcaacacaat
      961 tatctgtagt gcaaacagta cgtgggaccc tgagatacca acatgtatta aagagtcaac
     1021 tactcctagt acccaacctc caatttccag tgcctcagtg tcaactcctc ccagttccca
     1081 acctccaatt tccagtgcct cagtgtcaac tcctcccagt tcccaacctc caatttccag
     1141 tgtctcagga tatcccagtc ccagtgatga accaccacct aaagatgctg agagtttagg
     1201 tgcaggaatc attgttggaa ttgtcattgg tgcacttttt ggtgttgtag tagttgtctg
     1261 cagcatccgc ttctgttttc acaaaaagaa gaaaaggttg cagtaaaact gatggggtta
     1321 aactaaaagt tgctgagagg gaaagaaggt attgctacat acagcgcata ccaggataag
     1381 gcgaccactc cagcagagta gatgaactaa atggtttcca caaacccatg tatcattcag
     1441 ctatgaaaat gaaggaaatc ctaccatttg agacaataca gatggacctt gagggcatta
     1501 tgctgggtga ataagtcata tgaagaaagg caagtactgt gtgatctcac ttatatgtgg
     1561 aatccaataa aacaagctta tagaaaaaga aatcagattt acctttatca gaggtggtgg
     1621 gctgggggtg gcagttgagt aaaggcagtc agaaaatata aacttccaat tataagataa
     1681 aaacgtactg ggatgtaatg tacagcatag tgactacagt tagtaacact gtattgtatt
     1741 ttggcaagtt gctaatgaga aagtggatct taaaacttct tttttttttt tttttaacat
     1801 ctttattggg gtataattgc tttacaatgg tgtgtcagct tctgccttac aacaaagtga
     1861 atcagctata catacacaca tgcccccatg tgtcttccct cctgcgtctc cctcccgatc
     1921 ttaaaacttc taatcacatg gaagaaaaaa atttttttgt aggtacatga agtgatggat
     1981 gttaactaaa tttatcgtgt aatcattttg caatatatac atgatcaaat catgctgtac
     2041 accttaaact tatgcagtgt tatatgtcag ttatatttca gtactgaaaa aaaatctata
     2101 aaaattattt gctagtttct tacactgtca ggaatggaac tgttaagcta tagtgctaac
     2161 attttaatgt ggctgaagta cagtcaccat catttaatgc ttctttgaaa tgtgtatgaa
     2221 tttgtgtttg aatatcttgc ttgtttttcc ttaaataacg cttgtattta taggacaagt
     2281 taacacagta tcgcgactag tgttaaggtg gggaaatatt ttttctataa aatctccaaa
     2341 ctcagagaac tataattcaa aatgacatta catttcattt gtaaagaaag tgattttgaa
     2401 atcttttctg ttcaaagatg attgccaact cttaaaattc attcttcaac aatcccaaaa
     2461 tatgcattat atattgttta ttataaaagt ttgatttcct taactaagaa tattaccgga
     2521 aaatactctt acagttcata ggttaaaata ctattttaaa aaatttgtaa cctcttggtg
     2581 atttaaagat gctataaagt ttatttctgg catttgttct tcaccccttt taataacaat
     2641 aaaccagtct aagaaatcaa gaagaattca gcatcagttg catgcttctg tacaaagtta
     2701 gagggcttct aacacccata gcaggaatgc cagctcagga caaagtgaac actgtggact
     2761 tgtagttttc ttcaaaagaa ttccactctt taagagaatt agaatccatt ctaaattctg
     2821 tttttctctc cccacctgaa taaagagatg tcttacttta aacatgtcat ctgaatgtag
     2881 gcagttttgt agggaataaa ttcatcagat aacctcaagt tgcattagaa tctgagtctc
     2941 acctcatctg taaagggcag agtaaaaatg aagccccata tttcagaaaa gcaaacttaa
     3001 ctttgtagat ttgctgtagg tcatgcaaag ggatggaaag aagaaagagc tcaggtagct
     3061 cttgacgctc aggtgggaca gatcccagcc ctcttctctg tcctcacacc aggcagggcc
     3121 tccttcaaat aagccagcgg ccaaagagga gggactgtct ctctaactcc aattacattt
     3181 ttacatgttt tgttccacac ttttatagtt agtagcacaa actgggccaa agaaacgttg
     3241 ccttagaaat atatgaataa agaatcaaga gtgaaccgga gtaaatattg ttttactccc
     3301 taaggacatg tttgtaaggc catgtaagtg gtccttccct ttgtagtctc tggtgaggca
     3361 ctttaggaag ataaatttga ggagaattca ggaattctga ggtaaataat agagttgaag
     3421 ttttgctgta cccttttcca cataattttt gagaatctag cacttgctta gaagcaaggg
     3481 ggtggctata gtacatattt ttaaaaccct caaagaagtg ttttcaacca aggattatta
     3541 tgcttaccaa aataaattga ctttcatagt atagtttcca cttcaaaatt agtttttcta
     3601 atttatttat atgtaagatt gaaatatgtg tgtacatata aattatgttc tgtttgtcaa
     3661 ataatttgtc aaatatatgg ggacaccatt tttctctaga aatgtttatt taaatgagag
     3721 agggaaaagt gtattttaat ttaaagcttt cttaaaactg cattttgagc attggacctt
     3781 cagatctatt
//
LOCUS       XM_032645946            3609 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760669), transcript variant X7, mRNA.
ACCESSION   XM_032645946
VERSION     XM_032645946.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3609
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3609
                     /gene="LOC116760669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 55 long SRA reads, 43 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760669"
     CDS             132..1220
                     /gene="LOC116760669"
                     /codon_start=1
                     /product="membrane cofactor protein-like isoform X7"
                     /protein_id="XP_032501837.1"
                     /db_xref="GeneID:116760669"
                     /translation="MTASCSSRKAPPYRSESPFSSRCFVGILLVALLFLLPISSDACG
                     EPPRYESMRLQGVPKPSYRPGDSIQYECRPGYQPKRPSLPTTAVCQHDSMWSLLQEAC
                     TRKQCPNLGDPPNGQVHYPNGSILFGSEAHYVCNVGYFLIGPSILYCDISGSTVDWSD
                     NPPVCEKILCKPPEKILNGKYTNSHKDIFEYSEVVTYSCDASNGTDQYSLVGESKLVC
                     IGNDKWSSDPPQCKVVKCVYPHVENGMMVSGHGPKFYYKATVVYRCNEGFKLNGSNTI
                     ICSANSTWDPEIPTCIKGYPSPSDEPPPKDAESLGAGIIVGIVIGALFGVVVVVCSIR
                     FCFHKKKKRKEGIATYSAYQDKATTPAE"
     misc_feature    312..1010
                     /gene="LOC116760669"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 tgcggcccag gccacgccca gctgcgagac caaggttgaa ggtttgtgag tgcgtggatt
       61 cttgtctctg gtaactggac tcagaaagat ctctgctgag ctgtttcagg tttctcgctg
      121 atctcccgaa aatgacggcg tcttgctcct ctcgcaaggc acccccctac cgctccgaga
      181 gtcccttttc ttctaggtgc ttcgttggga ttcttttggt ggcgctactg ttcctgcttc
      241 ccatatcctc cgatgcctgt ggtgagccac caaggtatga atctatgcgg ctccagggtg
      301 tccctaaacc cagttatagg cctggggaca gtatacagta tgaatgtcgc ccaggttacc
      361 agcccaagcg tccttctctt cctactactg ctgtttgtca gcatgatagt atgtggtcac
      421 ttctccagga ggcctgtaca agaaaacagt gtcctaacct aggggatccc ccaaatggcc
      481 aagtacacta cccaaatgga agtattctgt ttggctcaga ggctcattat gtttgtaatg
      541 ttggttattt cttaattgga ccaagtattc tatactgtga catttctgga agtactgtgg
      601 actggagtga taatcctcca gtatgtgaaa agattttgtg taaaccacct gaaaaaattc
      661 taaatggaaa atacacaaat agccacaaag atatatttga atacagtgaa gtagtaactt
      721 atagttgtga tgcttcaaat ggaacagatc aatattcact tgttggagag agcaagcttg
      781 tttgtattgg aaatgacaaa tggagtagtg accctcctca gtgtaaagtg gtcaaatgtg
      841 tatatccaca tgttgaaaat ggaatgatgg tctcaggaca tggaccaaaa ttttactaca
      901 aagcaacggt tgtatataga tgcaatgagg gttttaagct taatggcagc aacacaatta
      961 tctgtagtgc aaacagtacg tgggaccctg agataccaac atgtattaaa ggatatccca
     1021 gtcccagtga tgaaccacca cctaaagatg ctgagagttt aggtgcagga atcattgttg
     1081 gaattgtcat tggtgcactt tttggtgttg tagtagttgt ctgcagcatc cgcttctgtt
     1141 ttcacaaaaa gaagaaaagg aaagaaggta ttgctacata cagcgcatac caggataagg
     1201 cgaccactcc agcagagtag atgaactaaa tggtttccac aaacccatgt atcattcagc
     1261 tatgaaaatg aaggaaatcc taccatttga gacaatacag atggaccttg agggcattat
     1321 gctgggtgaa taagtcatat gaagaaaggc aagtactgtg tgatctcact tatatgtgga
     1381 atccaataaa acaagcttat agaaaaagaa atcagattta cctttatcag aggtggtggg
     1441 ctgggggtgg cagttgagta aaggcagtca gaaaatataa acttccaatt ataagataaa
     1501 aacgtactgg gatgtaatgt acagcatagt gactacagtt agtaacactg tattgtattt
     1561 tggcaagttg ctaatgagaa agtggatctt aaaacttctt tttttttttt ttttaacatc
     1621 tttattgggg tataattgct ttacaatggt gtgtcagctt ctgccttaca acaaagtgaa
     1681 tcagctatac atacacacat gcccccatgt gtcttccctc ctgcgtctcc ctcccgatct
     1741 taaaacttct aatcacatgg aagaaaaaaa tttttttgta ggtacatgaa gtgatggatg
     1801 ttaactaaat ttatcgtgta atcattttgc aatatataca tgatcaaatc atgctgtaca
     1861 ccttaaactt atgcagtgtt atatgtcagt tatatttcag tactgaaaaa aaatctataa
     1921 aaattatttg ctagtttctt acactgtcag gaatggaact gttaagctat agtgctaaca
     1981 ttttaatgtg gctgaagtac agtcaccatc atttaatgct tctttgaaat gtgtatgaat
     2041 ttgtgtttga atatcttgct tgtttttcct taaataacgc ttgtatttat aggacaagtt
     2101 aacacagtat cgcgactagt gttaaggtgg ggaaatattt tttctataaa atctccaaac
     2161 tcagagaact ataattcaaa atgacattac atttcatttg taaagaaagt gattttgaaa
     2221 tcttttctgt tcaaagatga ttgccaactc ttaaaattca ttcttcaaca atcccaaaat
     2281 atgcattata tattgtttat tataaaagtt tgatttcctt aactaagaat attaccggaa
     2341 aatactctta cagttcatag gttaaaatac tattttaaaa aatttgtaac ctcttggtga
     2401 tttaaagatg ctataaagtt tatttctggc atttgttctt cacccctttt aataacaata
     2461 aaccagtcta agaaatcaag aagaattcag catcagttgc atgcttctgt acaaagttag
     2521 agggcttcta acacccatag caggaatgcc agctcaggac aaagtgaaca ctgtggactt
     2581 gtagttttct tcaaaagaat tccactcttt aagagaatta gaatccattc taaattctgt
     2641 ttttctctcc ccacctgaat aaagagatgt cttactttaa acatgtcatc tgaatgtagg
     2701 cagttttgta gggaataaat tcatcagata acctcaagtt gcattagaat ctgagtctca
     2761 cctcatctgt aaagggcaga gtaaaaatga agccccatat ttcagaaaag caaacttaac
     2821 tttgtagatt tgctgtaggt catgcaaagg gatggaaaga agaaagagct caggtagctc
     2881 ttgacgctca ggtgggacag atcccagccc tcttctctgt cctcacacca ggcagggcct
     2941 ccttcaaata agccagcggc caaagaggag ggactgtctc tctaactcca attacatttt
     3001 tacatgtttt gttccacact tttatagtta gtagcacaaa ctgggccaaa gaaacgttgc
     3061 cttagaaata tatgaataaa gaatcaagag tgaaccggag taaatattgt tttactccct
     3121 aaggacatgt ttgtaaggcc atgtaagtgg tccttccctt tgtagtctct ggtgaggcac
     3181 tttaggaaga taaatttgag gagaattcag gaattctgag gtaaataata gagttgaagt
     3241 tttgctgtac ccttttccac ataatttttg agaatctagc acttgcttag aagcaagggg
     3301 gtggctatag tacatatttt taaaaccctc aaagaagtgt tttcaaccaa ggattattat
     3361 gcttaccaaa ataaattgac tttcatagta tagtttccac ttcaaaatta gtttttctaa
     3421 tttatttata tgtaagattg aaatatgtgt gtacatataa attatgttct gtttgtcaaa
     3481 taatttgtca aatatatggg gacaccattt ttctctagaa atgtttattt aaatgagaga
     3541 gggaaaagtg tattttaatt taaagctttc ttaaaactgc attttgagca ttggaccttc
     3601 agatctatt
//
LOCUS       XM_032645954            3654 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760669), transcript variant X8, mRNA.
ACCESSION   XM_032645954
VERSION     XM_032645954.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3654
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3654
                     /gene="LOC116760669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 43 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760669"
     CDS             133..1170
                     /gene="LOC116760669"
                     /codon_start=1
                     /product="membrane cofactor protein-like isoform X8"
                     /protein_id="XP_032501845.1"
                     /db_xref="GeneID:116760669"
                     /translation="MTASCSSRKAPPYRSESPFSSRCFVGILLVALLFLLPISSDACG
                     EPPRYESMRLQGVPKPSYRPGDSIQYECRPGYQPKRPSLPTTAVCQHDSMWSLLQEAC
                     TRKQCPNLGDPPNGQVHYPNGSILFGSEAHYVCNVGYFLIGPSILYCDISGSTVDWSD
                     NPPVCEKILCKPPEKILNGKYTNSHKDIFEYSEVVTYSCDASNGTDQYSLVGESKLVC
                     IGNDKWSSDPPQCKVVKCVYPHVENGMMVSGHGPKFYYKATVVYRCNEGFKLNGSNTI
                     ICSANSTWDPEIPTCIKGYPSPSDEPPPKDAESLGAGIIVGIVIGALFGVVVVVCSIR
                     FCFHKKKKRLQ"
     misc_feature    313..1011
                     /gene="LOC116760669"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 gtgcggccca ggccacgccc agctgcgaga ccaaggttga aggtttgtga gtgcgtggat
       61 tcttgtctct ggtaactgga ctcagaaaga tctctgctga gctgtttcag gtttctcgct
      121 gatctcccga aaatgacggc gtcttgctcc tctcgcaagg caccccccta ccgctccgag
      181 agtccctttt cttctaggtg cttcgttggg attcttttgg tggcgctact gttcctgctt
      241 cccatatcct ccgatgcctg tggtgagcca ccaaggtatg aatctatgcg gctccagggt
      301 gtccctaaac ccagttatag gcctggggac agtatacagt atgaatgtcg cccaggttac
      361 cagcccaagc gtccttctct tcctactact gctgtttgtc agcatgatag tatgtggtca
      421 cttctccagg aggcctgtac aagaaaacag tgtcctaacc taggggatcc cccaaatggc
      481 caagtacact acccaaatgg aagtattctg tttggctcag aggctcatta tgtttgtaat
      541 gttggttatt tcttaattgg accaagtatt ctatactgtg acatttctgg aagtactgtg
      601 gactggagtg ataatcctcc agtatgtgaa aagattttgt gtaaaccacc tgaaaaaatt
      661 ctaaatggaa aatacacaaa tagccacaaa gatatatttg aatacagtga agtagtaact
      721 tatagttgtg atgcttcaaa tggaacagat caatattcac ttgttggaga gagcaagctt
      781 gtttgtattg gaaatgacaa atggagtagt gaccctcctc agtgtaaagt ggtcaaatgt
      841 gtatatccac atgttgaaaa tggaatgatg gtctcaggac atggaccaaa attttactac
      901 aaagcaacgg ttgtatatag atgcaatgag ggttttaagc ttaatggcag caacacaatt
      961 atctgtagtg caaacagtac gtgggaccct gagataccaa catgtattaa aggatatccc
     1021 agtcccagtg atgaaccacc acctaaagat gctgagagtt taggtgcagg aatcattgtt
     1081 ggaattgtca ttggtgcact ttttggtgtt gtagtagttg tctgcagcat ccgcttctgt
     1141 tttcacaaaa agaagaaaag gttgcagtaa aactgatggg gttaaactaa aagttgctga
     1201 gagggaaaga aggtattgct acatacagcg cataccagga taaggcgacc actccagcag
     1261 agtagatgaa ctaaatggtt tccacaaacc catgtatcat tcagctatga aaatgaagga
     1321 aatcctacca tttgagacaa tacagatgga ccttgagggc attatgctgg gtgaataagt
     1381 catatgaaga aaggcaagta ctgtgtgatc tcacttatat gtggaatcca ataaaacaag
     1441 cttatagaaa aagaaatcag atttaccttt atcagaggtg gtgggctggg ggtggcagtt
     1501 gagtaaaggc agtcagaaaa tataaacttc caattataag ataaaaacgt actgggatgt
     1561 aatgtacagc atagtgacta cagttagtaa cactgtattg tattttggca agttgctaat
     1621 gagaaagtgg atcttaaaac ttcttttttt ttttttttta acatctttat tggggtataa
     1681 ttgctttaca atggtgtgtc agcttctgcc ttacaacaaa gtgaatcagc tatacataca
     1741 cacatgcccc catgtgtctt ccctcctgcg tctccctccc gatcttaaaa cttctaatca
     1801 catggaagaa aaaaattttt ttgtaggtac atgaagtgat ggatgttaac taaatttatc
     1861 gtgtaatcat tttgcaatat atacatgatc aaatcatgct gtacacctta aacttatgca
     1921 gtgttatatg tcagttatat ttcagtactg aaaaaaaatc tataaaaatt atttgctagt
     1981 ttcttacact gtcaggaatg gaactgttaa gctatagtgc taacatttta atgtggctga
     2041 agtacagtca ccatcattta atgcttcttt gaaatgtgta tgaatttgtg tttgaatatc
     2101 ttgcttgttt ttccttaaat aacgcttgta tttataggac aagttaacac agtatcgcga
     2161 ctagtgttaa ggtggggaaa tattttttct ataaaatctc caaactcaga gaactataat
     2221 tcaaaatgac attacatttc atttgtaaag aaagtgattt tgaaatcttt tctgttcaaa
     2281 gatgattgcc aactcttaaa attcattctt caacaatccc aaaatatgca ttatatattg
     2341 tttattataa aagtttgatt tccttaacta agaatattac cggaaaatac tcttacagtt
     2401 cataggttaa aatactattt taaaaaattt gtaacctctt ggtgatttaa agatgctata
     2461 aagtttattt ctggcatttg ttcttcaccc cttttaataa caataaacca gtctaagaaa
     2521 tcaagaagaa ttcagcatca gttgcatgct tctgtacaaa gttagagggc ttctaacacc
     2581 catagcagga atgccagctc aggacaaagt gaacactgtg gacttgtagt tttcttcaaa
     2641 agaattccac tctttaagag aattagaatc cattctaaat tctgtttttc tctccccacc
     2701 tgaataaaga gatgtcttac tttaaacatg tcatctgaat gtaggcagtt ttgtagggaa
     2761 taaattcatc agataacctc aagttgcatt agaatctgag tctcacctca tctgtaaagg
     2821 gcagagtaaa aatgaagccc catatttcag aaaagcaaac ttaactttgt agatttgctg
     2881 taggtcatgc aaagggatgg aaagaagaaa gagctcaggt agctcttgac gctcaggtgg
     2941 gacagatccc agccctcttc tctgtcctca caccaggcag ggcctccttc aaataagcca
     3001 gcggccaaag aggagggact gtctctctaa ctccaattac atttttacat gttttgttcc
     3061 acacttttat agttagtagc acaaactggg ccaaagaaac gttgccttag aaatatatga
     3121 ataaagaatc aagagtgaac cggagtaaat attgttttac tccctaagga catgtttgta
     3181 aggccatgta agtggtcctt ccctttgtag tctctggtga ggcactttag gaagataaat
     3241 ttgaggagaa ttcaggaatt ctgaggtaaa taatagagtt gaagttttgc tgtacccttt
     3301 tccacataat ttttgagaat ctagcacttg cttagaagca agggggtggc tatagtacat
     3361 atttttaaaa ccctcaaaga agtgttttca accaaggatt attatgctta ccaaaataaa
     3421 ttgactttca tagtatagtt tccacttcaa aattagtttt tctaatttat ttatatgtaa
     3481 gattgaaata tgtgtgtaca tataaattat gttctgtttg tcaaataatt tgtcaaatat
     3541 atggggacac catttttctc tagaaatgtt tatttaaatg agagagggaa aagtgtattt
     3601 taatttaaag ctttcttaaa actgcatttt gagcattgga ccttcagatc tatt
//
LOCUS       XR_004351803            5609 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X1, misc_RNA.
ACCESSION   XR_004351803
VERSION     XR_004351803.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5609
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5609
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..5609
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X1"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 cccaggtact gggtagaacc gccactcgga ggttagtggg tgcgccccgg gcttcctggt
       61 gcctgccggg gctgtgctcc tgggaggatg tctgacttgg ggagatgctc tgctctcctt
      121 ccaggaggag tgggggcagt actgcagagg ctgggcacgc ctctggaaag gttcctgggg
      181 ccagaaacgt gcgtcacccg gcgggcgggc acgcggtcct ctgaatgggg ctcctggcgg
      241 catactgtgc ccgctagtca ctcctggcgg ctgcaggagg gggtgaccca gctcctcctt
      301 ggggaagctg ggctctgggt gtctctcccc caacctccag agttagattt cacctaagcc
      361 tgaagtttca cttctgagtc catcttcact gggtcaagta gatgatttgg gaatgacaag
      421 ggagcagtgt tggtggtttt tcttcagatc tgcgttggct tggacctgtg aactgtggtg
      481 ggcattgcgt gtgtgtagta gaccaaaggc acacttacgt ttcctcttgt ggaaagcacc
      541 agcttccctg aaagcagttc agggctgtgc ccatcctctg cccagcctaa gtcactctct
      601 gggaaacagg gaggcgtcct tgatcccatc ttcacgccac ccctcctcct ccccttcact
      661 gcccactgtc tcttgctatc ccccaggccc catggcatcc ccagggcagg atagccatgt
      721 gcatcctccc ggccagccag tcatcccgat tagggcctcc atgccctgtc ctgagtctgg
      781 gaggttggga gatttccaga cccaagtggt gttgaggaag ggacagaggc ctaggaacat
      841 aggcctccat acccctgccc caagagagac cagagctgct gttgctgggc ccacacaagc
      901 tgagaacgtg gtgatttttt tttacctcag gggtcatctt ggggggttta gtgggtctgg
      961 agtatgtcat cccaccttgg gatctagggc ctgtgaagtg tggtggttcc tggatgctga
     1021 gtcctcatgg aagccaagct gccagagaga gagagaggaa gagagagaga gccagttcca
     1081 cgttcccctc ctccgcggcc ccctgagccc tgaaaccagc attcccagcg gcaggaagat
     1141 ggatgatctg ggctccactt ccggcgctcc tcccccactc tggctggaac ttgcgtcagt
     1201 catatcaagg aggccctcgg gttgggtgcc agggagagca agctgcttcc agccgcatga
     1261 aatcacctgg ctacttgcaa ctaggggaca aaatcagcat ctggtttcag agaaccgaga
     1321 gtattttaga actcgagagt tggagcccaa actcaggtgg cagtgggtga tcagaaggcc
     1381 aaccattttc ctgaacacca cgaatagtgc tcatctaaat gatagcagtc tccagaatcc
     1441 tcagtgaagc cacaagccct aagcgccagg atgccagatg tcctgattct ttctgctagt
     1501 tctgcacaag gcctgccact gggtcatacc aacacccctc aggtttcggg atcttggtta
     1561 cccgacgagg gactgaaccc atgccccttg caatggaagc acggagtcct aactactgga
     1621 ccaccaggga agtccctgca ttaatataaa cttaaagaaa cattaatttg aaataacaac
     1681 aaagctatct gaagattaaa atgtgaaagt gaattactgt actaactaca gttatgtgat
     1741 attaccttca gcattcatta agttaacttc aagtgtttac agacaacttg aagctcatgg
     1801 cccatctgaa aactactttc ctggttggct ttagcctcaa aggaatccta agagaaccaa
     1861 gcagatacat agggctgggt aggcccacag tgccattcta gttggtatgt ttgtcttccc
     1921 ctttgccctg tgatcaaagt caccactttg cttttactaa gaaattgccc ttcttattgg
     1981 ccattgtaga atctgctccc aaactcatga ctgtaaccta gggtagcgcc tcacaatata
     2041 agtggtggga aacataactc ctcttttcct ggccgtgcag acacacattc tggcacaaaa
     2101 ggaggaactt ccaattcatt tcattcagag acagaaggta gagggggtta aatggcttaa
     2161 agcaatgcat ttcataattt tccaaaatct gagggttttt tgttggtggt ggtttctctt
     2221 ttatatgtta aaaatatcct ggccaaggga aacagataaa tgcctttaaa gaattaatat
     2281 ttacaagtgg aaattgaata tctttacaaa attaagtgaa atgtattttg gtttctgtcg
     2341 aaaaaccaaa atgaacttaa aatgaacaca ttctgtgatt atttcccact gggctaaaaa
     2401 attcccccag ctttggattc atagctgcta gaaggtagag gagctagaca gtctgatcaa
     2461 aggacgtggg ggacgttact ctgttggcgc ctgttatcaa agcaagagcc tgtcaatgca
     2521 cattatttta cattaaaaca gggaaggtag gagaaaacat caataatcta gcaaagggaa
     2581 caggaatcca ggtgtcctct tggatgtcta ctgcccactt atcttagttc agtttatcaa
     2641 tatctaaata ttcattgaat atttttcaga agaaaggaca tctctgaaaa gaaacgcaac
     2701 agaaagcaga taccttttaa tgataaaagc aaacctttct ctcatctttt ctcagagaga
     2761 aataaaattt acttgtctgt ggctttcacc agttaggtat gtgctgaaca aaggaaggga
     2821 acagggatga ataaaatagt gacgtcaaac caaaaggaag caagagtggc ataaaaatgg
     2881 gataaaatca atgatggagg agaagggaag taaagctgac aattaggttc ataaattatg
     2941 gctctcctga ttctcattag gaacttgaaa caggaatttg gtacaagaag ctactttacc
     3001 tttgaagtct tacaggtcat ccagcagata tacagattct aaatttgtgt gcaatctgtc
     3061 tacctctgaa acctcttagc ctgaagtgaa taatgtaaac tctctttcac agaataagat
     3121 tgtatgagga gaaatggccc tggtctctag caccttagat tttgaggcaa tacacagagc
     3181 atgtattaat tccatgtaat actgtctcag aaatcgattt tatgacatac attttcagat
     3241 ggatcttttg catcgaggac agtttcttcc tgtggcacaa ttgttttcac ctgagggaag
     3301 atccctgtaa aacttattat gacttctcat ttttctagga tggatctaaa ttttataaat
     3361 atgctctctc aactgttaca acatctttgt tatttactag tttttgtcta aaatttttta
     3421 aagcctttgt tcaatgctca agaatttgag aaccaggtag aaaaatgttc aagttaattt
     3481 gaccattcaa gtttttaccc atgtcattat actccccgcc aactgaactg gattcaccat
     3541 ttatattata tccaaaaaag cttcagtaat attaatttaa gcagacagct taaaaattac
     3601 agttactgga tcagtcatta ttaatataac attaaaatat tttaaaacta caacaaataa
     3661 taaatatcct taatggaaaa aagaaaaagt actcagtcac tgttactaaa atacataaat
     3721 tattgcaata attctaatga acttaaaaaa ctctcactta tccagtgatg atttaacccg
     3781 agtagagaaa atcatgcatt tatgaaaaaa atattcacaa caaataattg aaaacattaa
     3841 tgtaaacaaa aggtatctgt tttttggaac cacacaatca gaacatgcaa gacaggactc
     3901 aagcaatagc aaaggagagg gcaagggctg tggattccaa ggctggaaag tttggtggaa
     3961 gagttagtta agaaaggaga ctgaaaggga aaaggaagga gggtgtagat ggagcctatc
     4021 agaccaactg ggatcctatt ctattcttag ttgagagcta agaaacagga aactataaca
     4081 gagtacttta accctgtggc catatttcat caaaatttaa tcgtcttaaa aatgactact
     4141 tatactattt tcatgctttg gtataaatat tgtagcaggg taattgtgtt cccaaaatat
     4201 cataaataca agtttatagc aaatccattt tgtatcaagt tttaacagca aatttgtgtt
     4261 tttttgtttt tgttttggcc acgccacgaa gcttgcaggt tcttagttcc ccatccaggg
     4321 attgaactcc agcccacggc agtgaaagtg ctgagtccta tccactggac tgccagggaa
     4381 ctcccataaa cagcaattct ggattattgt gcctggtatc ctgcttccag agttatccct
     4441 aggaatggag aagcaactgc ctacacttta cagtcttgta aagtagtttc taaagcaaca
     4501 aaagcaaatg gggtgggggg aaatacggac attaagcaat gcaaaggata taataaaaat
     4561 atttaccttt ttaaaggaaa ggcaaactaa agctaggtat cacttcacat tcttttaaaa
     4621 aagcatacac ataaatgagg agtctttaaa aaatccaata atcttaaaca ggtaaaacat
     4681 ttcccaataa gtttgatggt gtttcttcaa gttaaagagc acaggcacat cagtaatggt
     4741 ctacaccctg gtttctcaaa gtgtagtcca ggcccagcag catcatcact tgggaacaca
     4801 ttagaaatgg gatctcagat ctctaatgct actgaaactt taacctgggg gatacgatgc
     4861 tcagataatt gtttggcttt cattaactga tagctagaga gagtttttgg ttgatacttg
     4921 ttagggaacc ttattttggt gtagtgatgt tttaaacaaa gaaggggagt gaggagcaga
     4981 aagctatttt gttttgcttt cttgagaggt tatttctaga taaacctttt agacttgtca
     5041 aatatttcac tgatagtact tccttctcag attgctgtgt acatgtaatt tttaaaatat
     5101 actgctgata gagaaatcaa atatgtatac tatgtgttct acaaatgtaa gatttaagac
     5161 tcaaatgaag gcactgtgga tatttttaaa accaagaatt ttttataacc aagaaatata
     5221 aaaaaagttt tagctcttta tgagtgacga atgtactttt attatgtagt ccaaacccag
     5281 tgattaatat aaaaggaata tatatcataa agccatgaat accaattatt gttaattatt
     5341 agtttgattt caaagctatt taaagaagca atagggggga aaaaattcac taaaagtcag
     5401 aaatatcaaa gcacctaatc ttggtctatg ctccagtttt attctaagtc tttcattaga
     5461 ttttaaatta tttcattaaa atttaagatg atgtttaaaa attctattca ccttagaaga
     5521 tatgtatttg tacctttttt ttcaatttta agtccccccc atttcatttt tatagataaa
     5581 aagacagagt tcatgaagtg ccttataaa
//
LOCUS       XM_032645971            4811 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X2, mRNA.
ACCESSION   XM_032645971
VERSION     XM_032645971.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4811
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4811
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     CDS             2152..2637
                     /gene="LOC116760690"
                     /codon_start=1
                     /product="uncharacterized protein LOC116760690"
                     /protein_id="XP_032501862.1"
                     /db_xref="GeneID:116760690"
                     /translation="MWRHPSLVGEPSPACLLETRRSKEARIQRPPSLPPRSPETSIPS
                     GRKMDDLGSTSGAPPPLWLELASVISRRPSGWVPGRASCFQPHEITWLLATRGQNQHL
                     VSENREYFRTRELEPKLSRAVETTEAPGCWRTKQVSKHRLLAEPGVLSSPPKFNVLYS
                     Q"
ORIGIN      
        1 ctcatcttag ctgggtggtt ttagacaagt tacttgattt ttctaagtct tagtgttctc
       61 ggtcagtgag atggagcctc tatacctact acacagaaat gcctaatata ttgccaagca
      121 aataggttcc caagagaaag tgatgcagct ccattccccc tgcccagttg tctagtgggg
      181 atttaagaaa ggaacatagc aggtggctcg agaagaactg ggggagaagg aagcttacgt
      241 gcgttcagtg gtatcataag caggggcagg ggaggaggta acccggcagt atgcacctga
      301 agcctgtgag gtagtgcctt tccccccacc tggagtaaat accctctttt gcattaggag
      361 cttttgcatc aggaaaacac catggaaacg ccatgagcat tggtggtggc ggagtgaggg
      421 ttaaacagtg agccttcctg ggatcctttt gatgccagtg tgtcgggagc ctggagatgg
      481 agcgctcagc cgagtggcca ggacgttctg tcaacatgaa agcagcaaaa acagtttgtc
      541 ggggctcagc gctgaccccg ggctggtgtc attttcagga agggcttggc acaagaaaga
      601 ccaccgccag gcacgggatt gggggtgacg tcggataact cagtaggccc ctatagaccc
      661 ttgaatttta gaatctgaaa agaaaatcag ctgtttgtct tttattagat gagcttggca
      721 aacaggatca cttcttgaac tcctctcact ggtccccaac aagagacatc ttcccaggtt
      781 cagaaaaccc tttgggattt ctcggttgtg gcttattgcc ttggatggag ggcaggtccc
      841 ttctaggggg caggggtggg cctggcagtc ctagtgcccg ttatggggat atggagtcgt
      901 aggtttcctc tgctggcatc acgtgaagac ggtggatcca catcacaggc cttgagctga
      961 agaccagctc ttgggcagcc cacttcagcc tctcctttcc ttattatctc aaatcaaagt
     1021 cttatcttct ccccttcatc ttcctcattt ctttcttagg cgcagtagtg ggcctgaagt
     1081 ccttgacctt tgcgtctgtg tgtgtgtcat catggcggct cagggttcta gacttttctt
     1141 gaatctgcag cattgcgctt tgtgcgcgtg acgccccccc ccccccccgc tccgccccgc
     1201 ccacccggcc ccgccccacc aggccttctt cggagcaaga gagaacatgg gcctccatcg
     1261 ccactgaacc tcagccaagc cgtcatcccc agcatctggc ctcccttctc tcctcccccg
     1321 ctttcggcca gtgtctgggg tggaggagca aacaacttgt gggaggagat ggagggacag
     1381 cctggcctgg agctctctgc ctcctttcct cgtgtgccat ttttcagcct cacgcttcct
     1441 gtggatggat gatgccagca ctgacatttg tcgccgagcg cctcctctcc ccaaggactt
     1501 ccccgcgtga ctcttttggg gtctggaaag agtggctctg gggccttggg agccagaggg
     1561 gacaggggga cctggcccag gtcacagcag actgtgagac gggcgagggg tgggagctgg
     1621 ccgaacccac ccaagcgcaa aggcagcccc ggcccctttg cgtcatgtct ttttcagcct
     1681 gaggagagag caacttgacc taaaaaaatt gtatatatgt gggtgttgga tcctttgtgt
     1741 ctctttgtcc agaagctgtg catgtgatga gagcccaggt ctctgtactg tacagagaac
     1801 tgttgtcctt caggtttgtt ttcagaaaga tgtgatggat gggccgtcct tgatgagacc
     1861 gcgtgcccgc tgggactggc cttcctccag gatgctgggc ccggcgtggt gtttcttctg
     1921 tcagtggacg agaactcaga ggagttcagc tccatgagta ggtgacaaac tcctggagac
     1981 tcagctgacg atggtgccgg tgtgcagaag acagttgtca tcctgtggga taagcgtgtg
     2041 cccgtttgca tttatttgga acaaaaaaag gagctgcctg gcagcctggc tctctgcaag
     2101 gtgctgttga gcccctggtt tgtgtggttc tgtgaccaca agtgctgatg gatgtggcgc
     2161 catcccagtc ttgtcggtga accatcacca gcctgcttat tggaaaccag gcgcagcaag
     2221 gaagctagga ttcaacgccc tccttccctg cctcccagga gccctgaaac cagcattccc
     2281 agcggcagga agatggatga tctgggctcc acttccggcg ctcctccccc actctggctg
     2341 gaacttgcgt cagtcatatc aaggaggccc tcgggttggg tgccagggag agcaagctgc
     2401 ttccagccgc atgaaatcac ctggctactt gcaactaggg gacaaaatca gcatctggtt
     2461 tcagagaacc gagagtattt tagaactcga gagttggagc ccaaactcag ccgtgcagtg
     2521 gagaccacag aggcaccagg gtgctggaga acaaagcaag tatcgaagca ccggctcctt
     2581 gcagaaccag gcgtgctctc atctccaccc aagtttaatg tgttgtacag tcagtaatac
     2641 ccacccccat ctatgcagaa atattgccta ggactaccct caccctcaat cttcctcata
     2701 attaagttca agaacagaat gagacggtag tccagctaca gaacaggagg cagtgggcag
     2761 aagagtagga gcacagactt tggagtcaga cctggaatcg acaccattca ctagtcatgg
     2821 gactgtggac aagtttttga accacactga ggatcagttt cttctcctgc caaaaaggga
     2881 atactaccta ctccgcaaga ctgttgtgag aattcaagag cacagcttgg tgttcaaatt
     2941 ttatttcctt ctcttcccta gagcagcaca tgatgttatg tccaggaggc gtaaaaagta
     3001 gaagggttta tctagagtcc tgaagaattg gtagggaacc ggagagatgc agattcttct
     3061 ttctcctggt tatggtatca gaggaaatac agacatattt tcttagcttc aaacaaccaa
     3121 aaaagatggt gcaagtagga gatgagaaat ctaatttgaa caccatttgc aaacctaatt
     3181 ttcaggcaga atttgaaaac aacacaaaac aaaactccat tcttttatta gaggattatc
     3241 tacttagtac aattataaga cactaatctt tttgtgtcac agtagagaat aaataagatt
     3301 ggcaattaac ggggtcatat ttgaatgtcc tgactgctca cgtatggctg ggaaggcgga
     3361 gcccgtgatc tacgtgacta ggacacatgg aagtgttgcc ctggctcagg tgaaacccac
     3421 ctttgtgtag tgtctagagc ctcacaggca gaaagggtgc ttgtttcctg atgacgtgag
     3481 aaaatatggg aaaatgcttt gcacactgtg aaatagttta caaagcaggg caatactaat
     3541 gtacatatta acccagttta gtaacagctt tggctatttt atttcgtcat atatataata
     3601 atctgtaggg actggttatg gaattaagta acttagaatt catgagtttt gtattgcgat
     3661 tgtctgtgta aattaccagc tttgactttc gtgttctttg agcatcactt tgtaactctt
     3721 ctctgtgcct ttctaatgga tccatatatc atgtcccgtc acaagtggaa ctgcaagaag
     3781 acacctctgc tcggggcaga ggctgggtct tccgatcgca tctcccttct ttcttcagtg
     3841 agatcctctt cttctggaag ctggtttcac atggtggctt agatttttcc atctttgtat
     3901 ctagcaccat ttgaaatcag tgttttagga gtaagaattg cagcacagca aaaggccaac
     3961 cgcagaggag ctgctgctcg tgggatcagc ttccctcctt ctgccacctg agccggttca
     4021 agaaaaggaa gaacttgaga atcaaagtac actcttgagt gtgttgggtt gtggaagggg
     4081 acagtgcagg gatggggtcg tgttcaatag aaactcagag gcttgagcag agccagaggt
     4141 tgtgattgtc tttctgttga cagggagcgg caacccctag cagtagcctg ttggtaaggc
     4201 ctttgagcac acgcttgggc aatgccgggt tgggtacttg attgcaatag gcaaggggag
     4261 gggtgtggac cagaaggact atctcatcac atcagcactg tccacctgct cctagatgcc
     4321 gtgaaacatt cagctgcagt tgccgagcag ctgaaatcag acttgccacc tgcactgtca
     4381 aggtgccgga ccccaccgag caccactgga cccatctctt acacaggctg accgatttct
     4441 cctggtgttc agagtctgtt tttgtctagc accatttgaa atcggttatg atgtaggggg
     4501 aaaagcagca gcctcgaggc ctcatgccaa gtctggtcag caacagcctg gggcttcctg
     4561 gaagatggat gcgcagagag agggggagga aggttatgct ttttcctgct agcttcttta
     4621 actacatcta caatacttta tgcacgggta atagatcagt taatggattt ttcagaagca
     4681 aatcactaaa atttatctga tgtcctcggt ttgccgaaat gtggtagtga tgtaaactat
     4741 aaattggttg ctgttgaatt atctttcagt catgcatcct gaccttaata aatgctttac
     4801 tgtacacaat t
//
LOCUS       XM_032645981            2991 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X3, mRNA.
ACCESSION   XM_032645981
VERSION     XM_032645981.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2991
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     CDS             332..817
                     /gene="LOC116760690"
                     /codon_start=1
                     /product="uncharacterized protein LOC116760690"
                     /protein_id="XP_032501872.1"
                     /db_xref="GeneID:116760690"
                     /translation="MWRHPSLVGEPSPACLLETRRSKEARIQRPPSLPPRSPETSIPS
                     GRKMDDLGSTSGAPPPLWLELASVISRRPSGWVPGRASCFQPHEITWLLATRGQNQHL
                     VSENREYFRTRELEPKLSRAVETTEAPGCWRTKQVSKHRLLAEPGVLSSPPKFNVLYS
                     Q"
ORIGIN      
        1 ccccgtcttc ccccacgaga tttgcattga cgtcccaggc tgtccagagc tgagcccatt
       61 atgggaagga cctgccttct ggaagctgct gctccccggt gcttggaaag agaactcaga
      121 ggagttcagc tccatgagta ggtgacaaac tcctggagac tcagctgacg atggtgccgg
      181 tgtgcagaag acagttgtca tcctgtggga taagcgtgtg cccgtttgca tttatttgga
      241 acaaaaaaag gagctgcctg gcagcctggc tctctgcaag gtgctgttga gcccctggtt
      301 tgtgtggttc tgtgaccaca agtgctgatg gatgtggcgc catcccagtc ttgtcggtga
      361 accatcacca gcctgcttat tggaaaccag gcgcagcaag gaagctagga ttcaacgccc
      421 tccttccctg cctcccagga gccctgaaac cagcattccc agcggcagga agatggatga
      481 tctgggctcc acttccggcg ctcctccccc actctggctg gaacttgcgt cagtcatatc
      541 aaggaggccc tcgggttggg tgccagggag agcaagctgc ttccagccgc atgaaatcac
      601 ctggctactt gcaactaggg gacaaaatca gcatctggtt tcagagaacc gagagtattt
      661 tagaactcga gagttggagc ccaaactcag ccgtgcagtg gagaccacag aggcaccagg
      721 gtgctggaga acaaagcaag tatcgaagca ccggctcctt gcagaaccag gcgtgctctc
      781 atctccaccc aagtttaatg tgttgtacag tcagtaatac ccacccccat ctatgcagaa
      841 atattgccta ggactaccct caccctcaat cttcctcata attaagttca agaacagaat
      901 gagacggtag tccagctaca gaacaggagg cagtgggcag aagagtagga gcacagactt
      961 tggagtcaga cctggaatcg acaccattca ctagtcatgg gactgtggac aagtttttga
     1021 accacactga ggatcagttt cttctcctgc caaaaaggga atactaccta ctccgcaaga
     1081 ctgttgtgag aattcaagag cacagcttgg tgttcaaatt ttatttcctt ctcttcccta
     1141 gagcagcaca tgatgttatg tccaggaggc gtaaaaagta gaagggttta tctagagtcc
     1201 tgaagaattg gtagggaacc ggagagatgc agattcttct ttctcctggt tatggtatca
     1261 gaggaaatac agacatattt tcttagcttc aaacaaccaa aaaagatggt gcaagtagga
     1321 gatgagaaat ctaatttgaa caccatttgc aaacctaatt ttcaggcaga atttgaaaac
     1381 aacacaaaac aaaactccat tcttttatta gaggattatc tacttagtac aattataaga
     1441 cactaatctt tttgtgtcac agtagagaat aaataagatt ggcaattaac ggggtcatat
     1501 ttgaatgtcc tgactgctca cgtatggctg ggaaggcgga gcccgtgatc tacgtgacta
     1561 ggacacatgg aagtgttgcc ctggctcagg tgaaacccac ctttgtgtag tgtctagagc
     1621 ctcacaggca gaaagggtgc ttgtttcctg atgacgtgag aaaatatggg aaaatgcttt
     1681 gcacactgtg aaatagttta caaagcaggg caatactaat gtacatatta acccagttta
     1741 gtaacagctt tggctatttt atttcgtcat atatataata atctgtaggg actggttatg
     1801 gaattaagta acttagaatt catgagtttt gtattgcgat tgtctgtgta aattaccagc
     1861 tttgactttc gtgttctttg agcatcactt tgtaactctt ctctgtgcct ttctaatgga
     1921 tccatatatc atgtcccgtc acaagtggaa ctgcaagaag acacctctgc tcggggcaga
     1981 ggctgggtct tccgatcgca tctcccttct ttcttcagtg agatcctctt cttctggaag
     2041 ctggtttcac atggtggctt agatttttcc atctttgtat ctagcaccat ttgaaatcag
     2101 tgttttagga gtaagaattg cagcacagca aaaggccaac cgcagaggag ctgctgctcg
     2161 tgggatcagc ttccctcctt ctgccacctg agccggttca agaaaaggaa gaacttgaga
     2221 atcaaagtac actcttgagt gtgttgggtt gtggaagggg acagtgcagg gatggggtcg
     2281 tgttcaatag aaactcagag gcttgagcag agccagaggt tgtgattgtc tttctgttga
     2341 cagggagcgg caacccctag cagtagcctg ttggtaaggc ctttgagcac acgcttgggc
     2401 aatgccgggt tgggtacttg attgcaatag gcaaggggag gggtgtggac cagaaggact
     2461 atctcatcac atcagcactg tccacctgct cctagatgcc gtgaaacatt cagctgcagt
     2521 tgccgagcag ctgaaatcag acttgccacc tgcactgtca aggtgccgga ccccaccgag
     2581 caccactgga cccatctctt acacaggctg accgatttct cctggtgttc agagtctgtt
     2641 tttgtctagc accatttgaa atcggttatg atgtaggggg aaaagcagca gcctcgaggc
     2701 ctcatgccaa gtctggtcag caacagcctg gggcttcctg gaagatggat gcgcagagag
     2761 agggggagga aggttatgct ttttcctgct agcttcttta actacatcta caatacttta
     2821 tgcacgggta atagatcagt taatggattt ttcagaagca aatcactaaa atttatctga
     2881 tgtcctcggt ttgccgaaat gtggtagtga tgtaaactat aaattggttg ctgttgaatt
     2941 atctttcagt catgcatcct gaccttaata aatgctttac tgtacacaat t
//
LOCUS       XM_032645991            3626 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X4, mRNA.
ACCESSION   XM_032645991
VERSION     XM_032645991.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3626
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     CDS             967..1452
                     /gene="LOC116760690"
                     /codon_start=1
                     /product="uncharacterized protein LOC116760690"
                     /protein_id="XP_032501882.1"
                     /db_xref="GeneID:116760690"
                     /translation="MWRHPSLVGEPSPACLLETRRSKEARIQRPPSLPPRSPETSIPS
                     GRKMDDLGSTSGAPPPLWLELASVISRRPSGWVPGRASCFQPHEITWLLATRGQNQHL
                     VSENREYFRTRELEPKLSRAVETTEAPGCWRTKQVSKHRLLAEPGVLSSPPKFNVLYS
                     Q"
ORIGIN      
        1 gtcgcttctc agtgttgttc ccctgcccct gacacagtcc ctcagtttcc atgagttcga
       61 gggagaccag catatttttg gatgggctca agccaaacgg tgaggaaagt aatgctactt
      121 agtggactaa ataccagtga tgttggagtt acctgctttt ggttgttgtt tttttgtttg
      181 tttagagttt tctgtctcct tttgttcata gaagtcactt gggggatgga ttatctgata
      241 aatcctggtg ttctcggagt tcacgttcac tgcttccctt atcctcatgt gaaggactaa
      301 gatgatgatt gtgggctccg gaaccatgtt ttagattatt gctgtctgat ccagcagcca
      361 ggacagccga aaccaaaagc ctctgaagtc ctgttcagcg atggaaatgt ggttggtccc
      421 acctttgtcc ctggagttgt caagcatgaa aatggggagg agttcatcag ggaaggacag
      481 agttcggagg aagtctccta agaggaggat gtcactagct tgcctagcac agtggttggg
      541 agtctggtac tggctgcata ccctgcacag gctcctcagc ccctaacctg taaagtggag
      601 gtgatggcca tcccagcttc caagtgccgt ggtgaggacc gactgagctg tgatacacgc
      661 atggggccgg caccaggcct gatgcgtggt gagtgattag tggatattga ggtccacgtt
      721 catgaggcgg atgctgtttg gacagagaac tcagaggagt tcagctccat gagtaggtga
      781 caaactcctg gagactcagc tgacgatggt gccggtgtgc agaagacagt tgtcatcctg
      841 tgggataagc gtgtgcccgt ttgcatttat ttggaacaaa aaaaggagct gcctggcagc
      901 ctggctctct gcaaggtgct gttgagcccc tggtttgtgt ggttctgtga ccacaagtgc
      961 tgatggatgt ggcgccatcc cagtcttgtc ggtgaaccat caccagcctg cttattggaa
     1021 accaggcgca gcaaggaagc taggattcaa cgccctcctt ccctgcctcc caggagccct
     1081 gaaaccagca ttcccagcgg caggaagatg gatgatctgg gctccacttc cggcgctcct
     1141 cccccactct ggctggaact tgcgtcagtc atatcaagga ggccctcggg ttgggtgcca
     1201 gggagagcaa gctgcttcca gccgcatgaa atcacctggc tacttgcaac taggggacaa
     1261 aatcagcatc tggtttcaga gaaccgagag tattttagaa ctcgagagtt ggagcccaaa
     1321 ctcagccgtg cagtggagac cacagaggca ccagggtgct ggagaacaaa gcaagtatcg
     1381 aagcaccggc tccttgcaga accaggcgtg ctctcatctc cacccaagtt taatgtgttg
     1441 tacagtcagt aatacccacc cccatctatg cagaaatatt gcctaggact accctcaccc
     1501 tcaatcttcc tcataattaa gttcaagaac agaatgagac ggtagtccag ctacagaaca
     1561 ggaggcagtg ggcagaagag taggagcaca gactttggag tcagacctgg aatcgacacc
     1621 attcactagt catgggactg tggacaagtt tttgaaccac actgaggatc agtttcttct
     1681 cctgccaaaa agggaatact acctactccg caagactgtt gtgagaattc aagagcacag
     1741 cttggtgttc aaattttatt tccttctctt ccctagagca gcacatgatg ttatgtccag
     1801 gaggcgtaaa aagtagaagg gtttatctag agtcctgaag aattggtagg gaaccggaga
     1861 gatgcagatt cttctttctc ctggttatgg tatcagagga aatacagaca tattttctta
     1921 gcttcaaaca accaaaaaag atggtgcaag taggagatga gaaatctaat ttgaacacca
     1981 tttgcaaacc taattttcag gcagaatttg aaaacaacac aaaacaaaac tccattcttt
     2041 tattagagga ttatctactt agtacaatta taagacacta atctttttgt gtcacagtag
     2101 agaataaata agattggcaa ttaacggggt catatttgaa tgtcctgact gctcacgtat
     2161 ggctgggaag gcggagcccg tgatctacgt gactaggaca catggaagtg ttgccctggc
     2221 tcaggtgaaa cccacctttg tgtagtgtct agagcctcac aggcagaaag ggtgcttgtt
     2281 tcctgatgac gtgagaaaat atgggaaaat gctttgcaca ctgtgaaata gtttacaaag
     2341 cagggcaata ctaatgtaca tattaaccca gtttagtaac agctttggct attttatttc
     2401 gtcatatata taataatctg tagggactgg ttatggaatt aagtaactta gaattcatga
     2461 gttttgtatt gcgattgtct gtgtaaatta ccagctttga ctttcgtgtt ctttgagcat
     2521 cactttgtaa ctcttctctg tgcctttcta atggatccat atatcatgtc ccgtcacaag
     2581 tggaactgca agaagacacc tctgctcggg gcagaggctg ggtcttccga tcgcatctcc
     2641 cttctttctt cagtgagatc ctcttcttct ggaagctggt ttcacatggt ggcttagatt
     2701 tttccatctt tgtatctagc accatttgaa atcagtgttt taggagtaag aattgcagca
     2761 cagcaaaagg ccaaccgcag aggagctgct gctcgtggga tcagcttccc tccttctgcc
     2821 acctgagccg gttcaagaaa aggaagaact tgagaatcaa agtacactct tgagtgtgtt
     2881 gggttgtgga aggggacagt gcagggatgg ggtcgtgttc aatagaaact cagaggcttg
     2941 agcagagcca gaggttgtga ttgtctttct gttgacaggg agcggcaacc cctagcagta
     3001 gcctgttggt aaggcctttg agcacacgct tgggcaatgc cgggttgggt acttgattgc
     3061 aataggcaag gggaggggtg tggaccagaa ggactatctc atcacatcag cactgtccac
     3121 ctgctcctag atgccgtgaa acattcagct gcagttgccg agcagctgaa atcagacttg
     3181 ccacctgcac tgtcaaggtg ccggacccca ccgagcacca ctggacccat ctcttacaca
     3241 ggctgaccga tttctcctgg tgttcagagt ctgtttttgt ctagcaccat ttgaaatcgg
     3301 ttatgatgta gggggaaaag cagcagcctc gaggcctcat gccaagtctg gtcagcaaca
     3361 gcctggggct tcctggaaga tggatgcgca gagagagggg gaggaaggtt atgctttttc
     3421 ctgctagctt ctttaactac atctacaata ctttatgcac gggtaataga tcagttaatg
     3481 gatttttcag aagcaaatca ctaaaattta tctgatgtcc tcggtttgcc gaaatgtggt
     3541 agtgatgtaa actataaatt ggttgctgtt gaattatctt tcagtcatgc atcctgacct
     3601 taataaatgc tttactgtac acaatt
//
LOCUS       XR_004351807           16859 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X5, misc_RNA.
ACCESSION   XR_004351807
VERSION     XR_004351807.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16859
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16859
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16859
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X5"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggtgggtg gaccaatggc aggtgaaaac ctttttttga ttggctgagg gaagggtatc
    11221 aaatctgaat ttgcatttca cttgcttaaa ggggaggggg gggaagccca gcagctttct
    11281 aaaatctgtt taggggtgtg cgtatgctcc tgtgtctgtg cctgcttctg actgaccggt
    11341 tgaagcctct tcctgtgcct ttttaacttc atgcactgta agggagagga gctgagggct
    11401 ccccaaactt ttgtttcgga ggggcagggg ttgggaagat gggcacgcag agggttgacc
    11461 aaactggaag aaaatactcg ttctttagtg ggaattttcc gatcagccac acctcagcgt
    11521 tgcggcaaaa taaatcttgg ctcccctgga aacgcatggg caaggtaggg cagagctgct
    11581 actgctgctg ttgccgccac cctgggcttc ctgctgactc cgggctcctc cccggggaca
    11641 ggagatttgc attgacgtcc caggctgtcc agagctgagc ccattatggg aaggacctgc
    11701 cttctggaag ctgctgctcc ccggtgcttg gaaaggtacc acatccgtct ggttcacggc
    11761 ggttatttca tttattcctc acctcaaccc tgcgaggaga gtcccatggc cggttcaccc
    11821 aagacaatgg ggattttttg tagctgaaat tgatggacta acaaacttca gttttcctgg
    11881 tctccttcct ctcgaaacag gaggcagagg agcttttgca tcaggaaaac accatggaaa
    11941 cgccatgagc attggtggtg gcggagtgag ggttaaacag tgagccttcc tgggatcctt
    12001 ttgatgccag tgtgtcggga gcctggagat ggagcgctca gccgagtggc caggacgttc
    12061 tgtcaacatg aaagcagcaa aaacagtttg tcggggctca gcgctgaccc cgggctggtg
    12121 tcattttcag gaagggcttg gcacaagaaa gaccaccgcc aggcacggga ttgggggtga
    12181 cgtcggataa ctcagtaggc ccctatagac ccttgaattt tagaatctga aaagaaaatc
    12241 agctgtttgt cttttattag atgagcttgg caaacaggat cacttcttga actcctctca
    12301 ctggtcccca acaagagaca tcttcccagg ttcagaaaac cctttgggat ttctcggttg
    12361 tggcttattg ccttggatgg agggcaggtc ccttctaggg ggcaggggtg ggcctggcag
    12421 tcctagtgcc cgttatgggg atatggagtc gtaggtttcc tctgctggca tcacgtgaag
    12481 acggtggatc cacatcacag gccttgagct gaagaccagc tcttgggcag cccacttcag
    12541 cctctccttt ccttattatc tcaaatcaaa gtcttatctt ctccccttca tcttcctcat
    12601 ttctttctta ggcgcagtag tgggcctgaa gtccttgacc tttgcgtctg tgtgtgtgtc
    12661 atcatggcgg ctcagggttc tagacttttc ttgaatctgc agcattgcgc tttgtgcgcg
    12721 tgacgccccc cccccccccc gctccgcccc gcccacccgg ccccgcccca ccaggccttc
    12781 ttcggagcaa gagagaacat gggcctccat cgccactgaa cctcagccaa gccgtcatcc
    12841 ccagcatctg gcctcccttc tctcctcccc cgctttcggc cagtgtctgg ggtggaggag
    12901 caaacaactt gtgggaggag atggagggac agcctggcct ggagctctct gcctcctttc
    12961 ctcgtgtgcc atttttcagc ctcacgcttc ctgtggatgg atgatgccag cactgacatt
    13021 tgtcgccgag cgcctcctct ccccaaggac ttccccgcgt gactcttttg gggtctggaa
    13081 agagtggctc tggggccttg ggagccagag gggacagggg gacctggccc aggtcacagc
    13141 agactgtgag acgggcgagg ggtgggagct ggccgaaccc acccaagcgc aaaggcagcc
    13201 ccggcccctt tgcgtcatgt ctttttcagc ctgaggagag agcaacttga cctaaaaaaa
    13261 ttgtatatat gtgggtgttg gatcctttgt gtctctttgt ccagaagctg tgcatgtgat
    13321 gagagcccag gtctctgtac tgtacagaga actgttgtcc ttcaggtttg ttttcagaaa
    13381 gatgtgatgg atgggccgtc cttgatgaga ccgcgtgccc gctgggactg gccttcctcc
    13441 aggatgctgg gcccggcgtg gtgtttcttc tgtcagtgga cgagaactca gaggagttca
    13501 gctccatgag taggtgacaa actcctggag actcagctga cgatggtgcc ggtgtgcaga
    13561 agacagttgt catcctgtgg gataagcgtg tgcccgtttg catttatttg gaacaaaaaa
    13621 aggagctgcc tggcagcctg gctctctgca aggtgctgtt gagcccctgg tttgtgtggt
    13681 tctgtgacca caagtgctga tggatgtggc gccatcccag tcttgtcggt gaaccatcac
    13741 cagcctgctt attggaaacc aggcgcagca aggaagctag gattcaacgc cctccttccc
    13801 tgcctcccag cccgcctcca aaagaattta atctgctgga caacaaacaa tactgttata
    13861 aaactttgaa aacaagaggg cgcggcctcc ctgacaagga gaagggcatg ccgggtaatg
    13921 ggcgagggag cctgccaggc ccgagatgga gccaggcaag agcccagttg gctgggcacc
    13981 tgggtgcccg cccctgccca gcccaccagc cgtgccatcc ccagtccaga ggagaaggaa
    14041 ccgaaacaaa agtgggggca gcggagctct tgaaaagggg aagttgtcct gagactggca
    14101 gacagaggtc ctgataacag aatgaggctg gcatagccgt gaaggtacag ccaccagcct
    14161 ggccagctgc aggggaagca ggagagaaag gtgctccaag ctggctttgg actccagacc
    14221 taccctctgt ctgcccagcc tcccaccccc cacctaggga agtggaacca ggtcatgggc
    14281 atgacccggt ccatgtgctc tgccaggagc cctgaaacca gcattcccag cggcaggaag
    14341 atggatgatc tgggctccac ttccggcgct cctcccccac tctggctgga acttgcgtca
    14401 gtcatatcaa ggaggccctc gggttgggtg ccagggagag caagctgctt ccagccgcat
    14461 gaaatcacct ggctacttgc aactagggga caaaatcagc atctggtttc agagaaccga
    14521 gagtatttta gaactcgaga gttggagccc aaactcagcc gtgcagtgga gaccacagag
    14581 gcaccagggt gctggagaac aaagcaagta tcgaagcacc ggctccttgc agaaccaggc
    14641 gtgctctcat ctccacccaa gtttaatgtg ttgtacagtc agtaataccc acccccatct
    14701 atgcagaaat attgcctagg actaccctca ccctcaatct tcctcataat taagttcaag
    14761 aacagaatga gacggtagtc cagctacaga acaggaggca gtgggcagaa gagtaggagc
    14821 acagactttg gagtcagacc tggaatcgac accattcact agtcatggga ctgtggacaa
    14881 gtttttgaac cacactgagg atcagtttct tctcctgcca aaaagggaat actacctact
    14941 ccgcaagact gttgtgagaa ttcaagagca cagcttggtg ttcaaatttt atttccttct
    15001 cttccctaga gcagcacatg atgttatgtc caggaggcgt aaaaagtaga agggtttatc
    15061 tagagtcctg aagaattggt agggaaccgg agagatgcag attcttcttt ctcctggtta
    15121 tggtatcaga ggaaatacag acatattttc ttagcttcaa acaaccaaaa aagatggtgc
    15181 aagtaggaga tgagaaatct aatttgaaca ccatttgcaa acctaatttt caggcagaat
    15241 ttgaaaacaa cacaaaacaa aactccattc ttttattaga ggattatcta cttagtacaa
    15301 ttataagaca ctaatctttt tgtgtcacag tagagaataa ataagattgg caattaacgg
    15361 ggtcatattt gaatgtcctg actgctcacg tatggctggg aaggcggagc ccgtgatcta
    15421 cgtgactagg acacatggaa gtgttgccct ggctcaggtg aaacccacct ttgtgtagtg
    15481 tctagagcct cacaggcaga aagggtgctt gtttcctgat gacgtgagaa aatatgggaa
    15541 aatgctttgc acactgtgaa atagtttaca aagcagggca atactaatgt acatattaac
    15601 ccagtttagt aacagctttg gctattttat ttcgtcatat atataataat ctgtagggac
    15661 tggttatgga attaagtaac ttagaattca tgagttttgt attgcgattg tctgtgtaaa
    15721 ttaccagctt tgactttcgt gttctttgag catcactttg taactcttct ctgtgccttt
    15781 ctaatggatc catatatcat gtcccgtcac aagtggaact gcaagaagac acctctgctc
    15841 ggggcagagg ctgggtcttc cgatcgcatc tcccttcttt cttcagtgag atcctcttct
    15901 tctggaagct ggtttcacat ggtggcttag atttttccat ctttgtatct agcaccattt
    15961 gaaatcagtg ttttaggagt aagaattgca gcacagcaaa aggccaaccg cagaggagct
    16021 gctgctcgtg ggatcagctt ccctccttct gccacctgag ccggttcaag aaaaggaaga
    16081 acttgagaat caaagtacac tcttgagtgt gttgggttgt ggaaggggac agtgcaggga
    16141 tggggtcgtg ttcaatagaa actcagaggc ttgagcagag ccagaggttg tgattgtctt
    16201 tctgttgaca gggagcggca acccctagca gtagcctgtt ggtaaggcct ttgagcacac
    16261 gcttgggcaa tgccgggttg ggtacttgat tgcaataggc aaggggaggg gtgtggacca
    16321 gaaggactat ctcatcacat cagcactgtc cacctgctcc tagatgccgt gaaacattca
    16381 gctgcagttg ccgagcagct gaaatcagac ttgccacctg cactgtcaag gtgccggacc
    16441 ccaccgagca ccactggacc catctcttac acaggctgac cgatttctcc tggtgttcag
    16501 agtctgtttt tgtctagcac catttgaaat cggttatgat gtagggggaa aagcagcagc
    16561 ctcgaggcct catgccaagt ctggtcagca acagcctggg gcttcctgga agatggatgc
    16621 gcagagagag ggggaggaag gttatgcttt ttcctgctag cttctttaac tacatctaca
    16681 atactttatg cacgggtaat agatcagtta atggattttt cagaagcaaa tcactaaaat
    16741 ttatctgatg tcctcggttt gccgaaatgt ggtagtgatg taaactataa attggttgct
    16801 gttgaattat ctttcagtca tgcatcctga ccttaataaa tgctttactg tacacaatt
//
LOCUS       XR_004351808           17123 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X6, misc_RNA.
ACCESSION   XR_004351808
VERSION     XR_004351808.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17123
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..17123
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..17123
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X6"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaagtgat actctccacg cctcctctcc
    11761 actgcaccca cctgcggcag tcccaccgtc ttccgtggac ctctcctgat taccttcaca
    11821 agaagcagcc ctcctcccat ccggccagac tcccatacgc ttcatgcctc ttttgtgcta
    11881 ctgtagatgt gctgtggttc ttcgtgtata agtcttatgt cacctattag attgtgagcc
    11941 ccaggaagct aggggaaaga agggaaacat gtacctgcgt ggtgctttct gtttgccagg
    12001 taccacatcc gtctggttca cggcggttat ttcatttatt cctcacctca accctgcgag
    12061 gagagtccca tggccggttc acccaagaca atggggattt tttgtagctg aaattgatgg
    12121 actaacaaac ttcagttttc ctggtctcct tcctctcgaa acaggaggca gaggagcttt
    12181 tgcatcagga aaacaccatg gaaacgccat gagcattggt ggtggcggag tgagggttaa
    12241 acagtgagcc ttcctgggat ccttttgatg ccagtgtgtc gggagcctgg agatggagcg
    12301 ctcagccgag tggccaggac gttctgtcaa catgaaagca gcaaaaacag tttgtcgggg
    12361 ctcagcgctg accccgggct ggtgtcattt tcaggaaggg cttggcacaa gaaagaccac
    12421 cgccaggcac gggattgggg gtgacgtcgg ataactcagt aggcccctat agacccttga
    12481 attttagaat ctgaaaagaa aatcagctgt ttgtctttta ttagatgagc ttggcaaaca
    12541 ggatcacttc ttgaactcct ctcactggtc cccaacaaga gacatcttcc caggttcaga
    12601 aaaccctttg ggatttctcg gttgtggctt attgccttgg atggagggca ggtcccttct
    12661 agggggcagg ggtgggcctg gcagtcctag tgcccgttat ggggatatgg agtcgtaggt
    12721 ttcctctgct ggcatcacgt gaagacggtg gatccacatc acaggccttg agctgaagac
    12781 cagctcttgg gcagcccact tcagcctctc ctttccttat tatctcaaat caaagtctta
    12841 tcttctcccc ttcatcttcc tcatttcttt cttaggcgca gtagtgggcc tgaagtcctt
    12901 gacctttgcg tctgtgtgtg tgtcatcatg gcggctcagg gttctagact tttcttgaat
    12961 ctgcagcatt gcgctttgtg cgcgtgacgc cccccccccc ccccgctccg ccccgcccac
    13021 ccggccccgc cccaccaggc cttcttcgga gcaagagaga acatgggcct ccatcgccac
    13081 tgaacctcag ccaagccgtc atccccagca tctggcctcc cttctctcct cccccgcttt
    13141 cggccagtgt ctggggtgga ggagcaaaca acttgtggga ggagatggag ggacagcctg
    13201 gcctggagct ctctgcctcc tttcctcgtg tgccattttt cagcctcacg cttcctgtgg
    13261 atggatgatg ccagcactga catttgtcgc cgagcgcctc ctctccccaa ggacttcccc
    13321 gcgtgactct tttggggtct ggaaagagtg gctctggggc cttgggagcc agaggggaca
    13381 gggggacctg gcccaggtca cagcagactg tgagacgggc gaggggtggg agctggccga
    13441 acccacccaa gcgcaaaggc agccccggcc cctttgcgtc atgtcttttt cagcctgagg
    13501 agagagcaac ttgacctaaa aaaattgtat atatgtgggt gttggatcct ttgtgtctct
    13561 ttgtccagaa gctgtgcatg tgatgagagc ccaggtctct gtactgtaca gagaactgtt
    13621 gtccttcagg tttgttttca gaaagatgtg atggatgggc cgtccttgat gagaccgcgt
    13681 gcccgctggg actggccttc ctccaggatg ctgggcccgg cgtggtgttt cttctgtcag
    13741 tggacgagaa ctcagaggag ttcagctcca tgagtaggtg acaaactcct ggagactcag
    13801 ctgacgatgg tgccggtgtg cagaagacag ttgtcatcct gtgggataag cgtgtgcccg
    13861 tttgcattta tttggaacaa aaaaaggagc tgcctggcag cctggctctc tgcaaggtgc
    13921 tgttgagccc ctggtttgtg tggttctgtg accacaagtg ctgatggatg tggcgccatc
    13981 ccagtcttgt cggtgaacca tcaccagcct gcttattgga aaccaggcgc agcaaggaag
    14041 ctaggattca acgccctcct tccctgcctc ccagcccgcc tccaaaagaa tttaatctgc
    14101 tggacaacaa acaatactgt tataaaactt tgaaaacaag agggcgcggc ctccctgaca
    14161 aggagaaggg catgccgggt aatgggcgag ggagcctgcc aggcccgaga tggagccagg
    14221 caagagccca gttggctggg cacctgggtg cccgcccctg cccagcccac cagccgtgcc
    14281 atccccagtc cagaggagaa ggaaccgaaa caaaagtggg ggcagcggag ctcttgaaaa
    14341 ggggaagttg tcctgagact ggcagacaga ggtcctgata acagaatgag gctggcatag
    14401 ccgtgaaggt acagccacca gcctggccag ctgcagggga agcaggagag aaaggtgctc
    14461 caagctggct ttggactcca gacctaccct ctgtctgccc agcctcccac cccccaccta
    14521 gggaagtgga accaggtcat gggcatgacc cggtccatgt gctctgccag gagccctgaa
    14581 accagcattc ccagcggcag gaagatggat gatctgggct ccacttccgg cgctcctccc
    14641 ccactctggc tggaacttgc gtcagtcata tcaaggaggc cctcgggttg ggtgccaggg
    14701 agagcaagct gcttccagcc gcatgaaatc acctggctac ttgcaactag gggacaaaat
    14761 cagcatctgg tttcagagaa ccgagagtat tttagaactc gagagttgga gcccaaactc
    14821 agccgtgcag tggagaccac agaggcacca gggtgctgga gaacaaagca agtatcgaag
    14881 caccggctcc ttgcagaacc aggcgtgctc tcatctccac ccaagtttaa tgtgttgtac
    14941 agtcagtaat acccaccccc atctatgcag aaatattgcc taggactacc ctcaccctca
    15001 atcttcctca taattaagtt caagaacaga atgagacggt agtccagcta cagaacagga
    15061 ggcagtgggc agaagagtag gagcacagac tttggagtca gacctggaat cgacaccatt
    15121 cactagtcat gggactgtgg acaagttttt gaaccacact gaggatcagt ttcttctcct
    15181 gccaaaaagg gaatactacc tactccgcaa gactgttgtg agaattcaag agcacagctt
    15241 ggtgttcaaa ttttatttcc ttctcttccc tagagcagca catgatgtta tgtccaggag
    15301 gcgtaaaaag tagaagggtt tatctagagt cctgaagaat tggtagggaa ccggagagat
    15361 gcagattctt ctttctcctg gttatggtat cagaggaaat acagacatat tttcttagct
    15421 tcaaacaacc aaaaaagatg gtgcaagtag gagatgagaa atctaatttg aacaccattt
    15481 gcaaacctaa ttttcaggca gaatttgaaa acaacacaaa acaaaactcc attcttttat
    15541 tagaggatta tctacttagt acaattataa gacactaatc tttttgtgtc acagtagaga
    15601 ataaataaga ttggcaatta acggggtcat atttgaatgt cctgactgct cacgtatggc
    15661 tgggaaggcg gagcccgtga tctacgtgac taggacacat ggaagtgttg ccctggctca
    15721 ggtgaaaccc acctttgtgt agtgtctaga gcctcacagg cagaaagggt gcttgtttcc
    15781 tgatgacgtg agaaaatatg ggaaaatgct ttgcacactg tgaaatagtt tacaaagcag
    15841 ggcaatacta atgtacatat taacccagtt tagtaacagc tttggctatt ttatttcgtc
    15901 atatatataa taatctgtag ggactggtta tggaattaag taacttagaa ttcatgagtt
    15961 ttgtattgcg attgtctgtg taaattacca gctttgactt tcgtgttctt tgagcatcac
    16021 tttgtaactc ttctctgtgc ctttctaatg gatccatata tcatgtcccg tcacaagtgg
    16081 aactgcaaga agacacctct gctcggggca gaggctgggt cttccgatcg catctccctt
    16141 ctttcttcag tgagatcctc ttcttctgga agctggtttc acatggtggc ttagattttt
    16201 ccatctttgt atctagcacc atttgaaatc agtgttttag gagtaagaat tgcagcacag
    16261 caaaaggcca accgcagagg agctgctgct cgtgggatca gcttccctcc ttctgccacc
    16321 tgagccggtt caagaaaagg aagaacttga gaatcaaagt acactcttga gtgtgttggg
    16381 ttgtggaagg ggacagtgca gggatggggt cgtgttcaat agaaactcag aggcttgagc
    16441 agagccagag gttgtgattg tctttctgtt gacagggagc ggcaacccct agcagtagcc
    16501 tgttggtaag gcctttgagc acacgcttgg gcaatgccgg gttgggtact tgattgcaat
    16561 aggcaagggg aggggtgtgg accagaagga ctatctcatc acatcagcac tgtccacctg
    16621 ctcctagatg ccgtgaaaca ttcagctgca gttgccgagc agctgaaatc agacttgcca
    16681 cctgcactgt caaggtgccg gaccccaccg agcaccactg gacccatctc ttacacaggc
    16741 tgaccgattt ctcctggtgt tcagagtctg tttttgtcta gcaccatttg aaatcggtta
    16801 tgatgtaggg ggaaaagcag cagcctcgag gcctcatgcc aagtctggtc agcaacagcc
    16861 tggggcttcc tggaagatgg atgcgcagag agagggggag gaaggttatg ctttttcctg
    16921 ctagcttctt taactacatc tacaatactt tatgcacggg taatagatca gttaatggat
    16981 ttttcagaag caaatcacta aaatttatct gatgtcctcg gtttgccgaa atgtggtagt
    17041 gatgtaaact ataaattggt tgctgttgaa ttatctttca gtcatgcatc ctgaccttaa
    17101 taaatgcttt actgtacaca att
//
LOCUS       XR_004351811           10915 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X7, misc_RNA.
ACCESSION   XR_004351811
VERSION     XR_004351811.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10915
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10915
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..10915
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X7"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gtggcggagg agatgggaag ggcagaagcc aaggtaaggc caagcaacca gggagatgta
       61 cagatgctct cctgagtgca tttgacattc ttgccccagg tcgcttctca gtgttgttcc
      121 cctgcccctg acacagtccc tcagtttcca tgagttcgag ggagaccagc atatttttgg
      181 atgggctcaa gccaaacggt gaggaaagta atgctactta gtggactaaa taccagtgat
      241 gttggagtta cctgcttttg gttgttgttt ttttgtttgt ttagagtttt ctgtctcctt
      301 ttgttcatag aagtcacttg ggggatggat tatctgataa atcctggtgt tctcggagtt
      361 cacgttcact gcttccctta tcctcatgtg aaggactaag atgatgattg tgggctccgg
      421 aaccatgttt tagattattg ctgtctgatc cagcagccag gacagccgaa accaaaagcc
      481 tctgaagtcc tgttcagcga tggaaatgtg gttggtccca cctttgtccc tggagttgtc
      541 aagcatgaaa atggggagga gttcatcagg gaaggacaga gttcggagga agtctcctaa
      601 gaggaggatg tcactagctt gcctagcaca gtggttggga gtctggtact ggctgcatac
      661 cctgcacagg ctcctcagcc cctaacctgt aaagtggagg tgatggccat cccagcttcc
      721 aagtgccgtg gtgaggaccg actgagctgt gatacacgca tggggccggc accaggcctg
      781 atgcgtggtg agtgattagt ggatattgag gtccacgttc atgaggcgga tgctgtttgg
      841 acagtgagaa aatgagttcc ggcttttaaa gagcagactt tggaaacatc agagatgcta
      901 atttgggaat gcttgtaggg tcctctcaca gaacctgtac gtcttgaggt gatggcctgt
      961 gtcttatact tcttctgcgc ggaatgtggc cttagcatct agtaggtact taatcagtga
     1021 tttacctcct ggggttaccg agtgcccttt gtctgctcct cccttccagg cggtaaacag
     1081 aaacaccttc tccctgtgga cctgaacctg tcagtgctgc ccgagaccag accgctgcct
     1141 gatttatcta gaacacccac tcgagccctt gatactcgtg tggagtttga gatcagtccc
     1201 ctgtacagag ctccctgtct tgagagaaat gacttctttc ctgatgaaag atccagcccg
     1261 tgttcaggag gccctaatga ggaaatggga ggacagagag gctgcactaa gcctgcgctg
     1321 ttggctgatg cccgccgaac tggagttcgt ggcaattcca gagtgcttgc attccaaacc
     1381 cagggcgagg gctgggtaaa agtccagctc atccccttta aagaaaaaaa ttcttcctct
     1441 ctgacatttc gaggttttga cccagatcag tcagaggcca cggagagctc gcaatgtctg
     1501 gagagtgtgt ttagttcccg aggcctggag ctgcagagaa gccggagcga gccagtgacc
     1561 tgctgggctt gagttgaagc cctgcctttt caagtgtgcc ctggcccagc ctccccagac
     1621 ctcacagggt ggacggaagg agccagcacc ttcccctcac tccaaagtta tctttacccc
     1681 ctgaaatcaa acatcgcatg cagcaccctg taaaactgct tccttgtagg cttgagcgtg
     1741 cttgctgagt aaacatcctc ccatgttttt ggaactgaat ccatttctgc ttcctggtca
     1801 tcccatgcgg gttctttctg ttctgggtgc catgcagaat caggttaata gaaggcagac
     1861 ctagcgttgg gcaggggcac ctaaaatgac agtttcaacc ttagtaaatt gtaaggagag
     1921 taacagcgtc gtgggaagaa agagaaaaga cttagacgaa aaatgaaatg aaacagagcc
     1981 tcccaaacat agtgctgcca tcatgctttg caagtcagag ttggttcctg ccgagccctg
     2041 agacggggac cttcctttgc atgggctcaa gctcagttgt gcggtggctg aaccacagtc
     2101 agcctccgtc tgtaggttgt gtggctgcgt ctggccctcc tgaccctaac ttgctcttgc
     2161 cccgtctctc gtgacttatt tgcctcttct ctctcacttc cacccacccg tgacatctcc
     2221 atcgccatgg cattgagcag ccacgtcatc caccatgttc acggggtgat gggccaactc
     2281 tgtgctgagc cctacttcct tctcgttctc cctcctgaag caggaggctc cctggcagag
     2341 ctcaaagccc tttgtttatt tgatcctggg cgtcttggat aaatcaggaa tgtcctgaca
     2401 tgaacttagg catgtttttc ttccatggaa aaggaaacta cggcaaatgg tatttaagta
     2461 ggcagaggac cattccgggg gacttgcgtt ggtgccatca aggccacatt cctttggtca
     2521 tcagaccagt aggtgacttc tttattggca tgctctaccc tggagcccag aaggtgtgaa
     2581 tttgaagcac tttctcccct gctgagagct tggcacagat gctctggact tcttttaaag
     2641 ccatggagta ccatggttgt cttccaggtg gtcttctttc tgctgggtga aaccttggcc
     2701 cagagtagtt gcttgaagaa ggctgcttgg gagttggggt acaggataag gttgctgcct
     2761 ggcctctcat tctccagccg tcttgaagtt gcaatgatct cgatgtgtga tctactttga
     2821 gtcagctgcc ccaggacctg aacacttccg atcagggcta ggctcttgtg gtacaaccgg
     2881 tcgccagaaa cctttgcggg tctgctttct ttggatgtgg cgttgtggga acccaagaat
     2941 tcctgagtct gtctaggtat atggagtcca gtgagtttag catctgagtt gttctggaac
     3001 tatttctggg tctgggggca ggaaaatgtt gggagctatg tgctttgctg cagtggagac
     3061 ctgtcagtaa ccaaaaaaca agcccagtca gtctccagag cattggtggg aacccccccc
     3121 ccccccagct ccctgtgaga gtttccaggt gtgaatgccc atgtattacc atggcagggg
     3181 cagtgcgggg tgggctggcg ggtgctcatc tcatttggcc acctgccctg gagagaagaa
     3241 gccagtcgtt ggccactgca ggtccaggct tggctgccgc tctgttttgc tgcttttcat
     3301 gttgtcagag gatcttcttg ggaacaaatg actcagcaac ctgaatctct gggactgagt
     3361 agcctaagtg ccttttgaga agtgattgga cctatctgca caggccctaa aattctgagc
     3421 cccggaagag tggagatccg gactggtttt actatagatt cttcaggccg ccgctcaatt
     3481 tggtttctcc aattcctgcc ccagtagaag gagctcactc atggggtaag caggcaatgt
     3541 tttaattatg ctttttgtcc ttagaaaatt ccaggaagaa aaaagatcct ggtctgtggc
     3601 caaaaaagca gaaaacaacg aaaatcagcg acggctgtaa ttctggactt gtctgtggca
     3661 gaaagagtta ataggacggt ggtctcaggg tgggggccgt tatattctcg ggtccaggag
     3721 aagctcacgt ggttcaagaa aagatgacgc cacatttagt gtgggacagc cctgtctggg
     3781 ttctgggcgc tgtcactcaa agagttaagc tagtcttatg gctggggagc cctcagggaa
     3841 ggcctgagcc tgcagggacc aggccctcta cgccccagag cagtgaggtc tggggtaaaa
     3901 gaggggctga gaagtgtggc caggaaagcc gagtgtaggc ccaacttttt tttttgcctt
     3961 gtttgaccag ccttggcact gccctctggc tctccagggg aaaagctgca gttctgctct
     4021 tgcaacacaa ggagcagact ggagaattta gatctgcgtc acagagctca gagagagaga
     4081 gaggagagag gggagagaga gagggagaga gagagagagc gcgagcgctc cgtcgatagg
     4141 tctgctagca acagccgtgc tgcagcagag agagagagag aaatcaagaa acaagtcata
     4201 gcaacaccgg gcaccaggtt ctgccagctc acttgccaag cgttcagaaa tctgtcaggg
     4261 gccggaggcc tctgggtagc ctaggctaag gagatgacac gcaaggtggc acgggcggtt
     4321 cccgcgggga ggaggcgacg atgggtggtc cgatgggctt caggacttga tggcgtaacc
     4381 cccgtcttcc cccacgtacg tatttgctgg gatcgggggc gatgtctctg cgtatgtggg
     4441 tgctctgtct ttctcacctt ctttcttgct ttttgctatt tttttttttt tttttctgag
     4501 ggaggggttt tttccacttt aatttctttt cccttagtgt cagctgctca agcctgaccg
     4561 aggtagagga aagaggagca agccgtccct ggcgtcccac ctgacctccc agcctctacc
     4621 cccatttcct tctatcgggc agacagacag acacacaggc tggttttcca agttgtttgg
     4681 gtatcagtgt ctgtccgtcc atatggttct caggtagaag gtacggagtg aggaggagaa
     4741 gtgttgagag gaaggcgaga ggggcagctt tctaggggtt gccttgttga aacattcggc
     4801 cctgggaatc cggggctgtt ggggagcagg tgggcaggat ggggtgtggg ctgcgagaag
     4861 tggggtaaag ctggtaggtt tgtcactgcg tagttgggga aagtggggaa tggtgacgca
     4921 gtcactgttg gatcttgtta ggggctctgg ggggacaggt agtgagggtc ccaggatctg
     4981 tagggccagc tgagaggggt tgaggatgag ctgagaaggg aagctagcat ttagagatta
     5041 aatgtcatcc ttttggcgtt ggaaagttgt ttaccttgtg ctctctgtgt ctccatgttg
     5101 gcacccttcc agttcacatg tgatggcctt ccttgtactg ctgcatcatt aactaagtga
     5161 ctgagctggc cttccattgg ccaggggagg gctctcactc cagacacttc ctctgattgg
     5221 tgggtggacc aatggcaggt gaaaaccttt ttttgattgg ctgagggaag ggtatcaaat
     5281 ctgaatttgc atttcacttg cttaaagggg agggggggga agcccagcag ctttctaaaa
     5341 tctgtttagg ggtgtgcgta tgctcctgtg tctgtgcctg cttctgactg accggttgaa
     5401 gcctcttcct gtgccttttt aacttcatgc actgtaaggg agaggagctg agggctcccc
     5461 aaacttttgt ttcggagggg caggggttgg gaagatgggc acgcagaggg ttgaccaaac
     5521 tggaagaaaa tactcgttct ttagtgggaa ttttccgatc agccacacct cagcgttgcg
     5581 gcaaaataaa tcttggctcc cctggaaacg catgggcaag gtagggcaga gctgctactg
     5641 ctgctgttgc cgccaccctg ggcttcctgc tgactccggg ctcctccccg gggacaggag
     5701 atttgcattg acgtcccagg ctgtccagag ctgagcccat tatgggaagg acctgccttc
     5761 tggaagctgc tgctccccgg tgcttggaaa ggtaccacat ccgtctggtt cacggcggtt
     5821 atttcattta ttcctcacct caaccctgcg aggagagtcc catggccggt tcacccaaga
     5881 caatggggat tttttgtagc tgaaattgat ggactaacaa acttcagttt tcctggtctc
     5941 cttcctctcg aaacaggagg cagaggagct tttgcatcag gaaaacacca tggaaacgcc
     6001 atgagcattg gtggtggcgg agtgagggtt aaacagtgag ccttcctggg atccttttga
     6061 tgccagtgtg tcgggagcct ggagatggag cgctcagccg agtggccagg acgttctgtc
     6121 aacatgaaag cagcaaaaac agtttgtcgg ggctcagcgc tgaccccggg ctggtgtcat
     6181 tttcaggaag ggcttggcac aagaaagacc accgccaggc acgggattgg gggtgacgtc
     6241 ggataactca gtaggcccct atagaccctt gaattttaga atctgaaaag aaaatcagct
     6301 gtttgtcttt tattagatga gcttggcaaa caggatcact tcttgaactc ctctcactgg
     6361 tccccaacaa gagacatctt cccaggttca gaaaaccctt tgggatttct cggttgtggc
     6421 ttattgcctt ggatggaggg caggtccctt ctagggggca ggggtgggcc tggcagtcct
     6481 agtgcccgtt atggggatat ggagtcgtag gtttcctctg ctggcatcac gtgaagacgg
     6541 tggatccaca tcacaggcct tgagctgaag accagctctt gggcagccca cttcagcctc
     6601 tcctttcctt attatctcaa atcaaagtct tatcttctcc ccttcatctt cctcatttct
     6661 ttcttaggcg cagtagtggg cctgaagtcc ttgacctttg cgtctgtgtg tgtgtcatca
     6721 tggcggctca gggttctaga cttttcttga atctgcagca ttgcgctttg tgcgcgtgac
     6781 gccccccccc ccccccgctc cgccccgccc acccggcccc gccccaccag gccttcttcg
     6841 gagcaagaga gaacatgggc ctccatcgcc actgaacctc agccaagccg tcatccccag
     6901 catctggcct cccttctctc ctcccccgct ttcggccagt gtctggggtg gaggagcaaa
     6961 caacttgtgg gaggagatgg agggacagcc tggcctggag ctctctgcct cctttcctcg
     7021 tgtgccattt ttcagcctca cgcttcctgt ggatggatga tgccagcact gacatttgtc
     7081 gccgagcgcc tcctctcccc aaggacttcc ccgcgtgact cttttggggt ctggaaagag
     7141 tggctctggg gccttgggag ccagagggga cagggggacc tggcccaggt cacagcagac
     7201 tgtgagacgg gcgaggggtg ggagctggcc gaacccaccc aagcgcaaag gcagccccgg
     7261 cccctttgcg tcatgtcttt ttcagcctga ggagagagca acttgaccta aaaaaattgt
     7321 atatatgtgg gtgttggatc ctttgtgtct ctttgtccag aagctgtgca tgtgatgaga
     7381 gcccaggtct ctgtactgta cagagaactg ttgtccttca ggtttgtttt cagaaagatg
     7441 tgatggatgg gccgtccttg atgagaccgc gtgcccgctg ggactggcct tcctccagga
     7501 tgctgggccc ggcgtggtgt ttcttctgtc agtggacgag aactcagagg agttcagctc
     7561 catgagtagg tgacaaactc ctggagactc agctgacgat ggtgccggtg tgcagaagac
     7621 agttgtcatc ctgtgggata agcgtgtgcc cgtttgcatt tatttggaac aaaaaaagga
     7681 gctgcctggc agcctggctc tctgcaaggt gctgttgagc ccctggtttg tgtggttctg
     7741 tgaccacaag tgctgatgga tgtggcgcca tcccagtctt gtcggtgaac catcaccagc
     7801 ctgcttattg gaaaccaggc gcagcaagga agctaggatt caacgccctc cttccctgcc
     7861 tcccagcccg cctccaaaag aatttaatct gctggacaac aaacaatact gttataaaac
     7921 tttgaaaaca agagggcgcg gcctccctga caaggagaag ggcatgccgg gtaatgggcg
     7981 agggagcctg ccaggcccga gatggagcca ggcaagagcc cagttggctg ggcacctggg
     8041 tgcccgcccc tgcccagccc accagccgtg ccatccccag tccagaggag aaggaaccga
     8101 aacaaaagtg ggggcagcgg agctcttgaa aaggggaagt tgtcctgaga ctggcagaca
     8161 gaggtcctga taacagaatg aggctggcat agccgtgaag gtacagccac cagcctggcc
     8221 agctgcaggg gaagcaggag agaaaggtgc tccaagctgg ctttggactc cagacctacc
     8281 ctctgtctgc ccagcctccc accccccacc tagggaagtg gaaccaggtc atgggcatga
     8341 cccggtccat gtgctctgcc aggagccctg aaaccagcat tcccagcggc aggaagatgg
     8401 atgatctggg ctccacttcc ggcgctcctc ccccactctg gctggaactt gcgtcagtca
     8461 tatcaaggag gccctcgggt tgggtgccag ggagagcaag ctgcttccag ccgcatgaaa
     8521 tcacctggct acttgcaact aggggacaaa atcagcatct ggtttcagag aaccgagagt
     8581 attttagaac tcgagagttg gagcccaaac tcagccgtgc agtggagacc acagaggcac
     8641 cagggtgctg gagaacaaag caagtatcga agcaccggct ccttgcagaa ccaggcgtgc
     8701 tctcatctcc acccaagttt aatgtgttgt acagtcagta atacccaccc ccatctatgc
     8761 agaaatattg cctaggacta ccctcaccct caatcttcct cataattaag ttcaagaaca
     8821 gaatgagacg gtagtccagc tacagaacag gaggcagtgg gcagaagagt aggagcacag
     8881 actttggagt cagacctgga atcgacacca ttcactagtc atgggactgt ggacaagttt
     8941 ttgaaccaca ctgaggatca gtttcttctc ctgccaaaaa gggaatacta cctactccgc
     9001 aagactgttg tgagaattca agagcacagc ttggtgttca aattttattt ccttctcttc
     9061 cctagagcag cacatgatgt tatgtccagg aggcgtaaaa agtagaaggg tttatctaga
     9121 gtcctgaaga attggtaggg aaccggagag atgcagattc ttctttctcc tggttatggt
     9181 atcagaggaa atacagacat attttcttag cttcaaacaa ccaaaaaaga tggtgcaagt
     9241 aggagatgag aaatctaatt tgaacaccat ttgcaaacct aattttcagg cagaatttga
     9301 aaacaacaca aaacaaaact ccattctttt attagaggat tatctactta gtacaattat
     9361 aagacactaa tctttttgtg tcacagtaga gaataaataa gattggcaat taacggggtc
     9421 atatttgaat gtcctgactg ctcacgtatg gctgggaagg cggagcccgt gatctacgtg
     9481 actaggacac atggaagtgt tgccctggct caggtgaaac ccacctttgt gtagtgtcta
     9541 gagcctcaca ggcagaaagg gtgcttgttt cctgatgacg tgagaaaata tgggaaaatg
     9601 ctttgcacac tgtgaaatag tttacaaagc agggcaatac taatgtacat attaacccag
     9661 tttagtaaca gctttggcta ttttatttcg tcatatatat aataatctgt agggactggt
     9721 tatggaatta agtaacttag aattcatgag ttttgtattg cgattgtctg tgtaaattac
     9781 cagctttgac tttcgtgttc tttgagcatc actttgtaac tcttctctgt gcctttctaa
     9841 tggatccata tatcatgtcc cgtcacaagt ggaactgcaa gaagacacct ctgctcgggg
     9901 cagaggctgg gtcttccgat cgcatctccc ttctttcttc agtgagatcc tcttcttctg
     9961 gaagctggtt tcacatggtg gcttagattt ttccatcttt gtatctagca ccatttgaaa
    10021 tcagtgtttt aggagtaaga attgcagcac agcaaaaggc caaccgcaga ggagctgctg
    10081 ctcgtgggat cagcttccct ccttctgcca cctgagccgg ttcaagaaaa ggaagaactt
    10141 gagaatcaaa gtacactctt gagtgtgttg ggttgtggaa ggggacagtg cagggatggg
    10201 gtcgtgttca atagaaactc agaggcttga gcagagccag aggttgtgat tgtctttctg
    10261 ttgacaggga gcggcaaccc ctagcagtag cctgttggta aggcctttga gcacacgctt
    10321 gggcaatgcc gggttgggta cttgattgca ataggcaagg ggaggggtgt ggaccagaag
    10381 gactatctca tcacatcagc actgtccacc tgctcctaga tgccgtgaaa cattcagctg
    10441 cagttgccga gcagctgaaa tcagacttgc cacctgcact gtcaaggtgc cggaccccac
    10501 cgagcaccac tggacccatc tcttacacag gctgaccgat ttctcctggt gttcagagtc
    10561 tgtttttgtc tagcaccatt tgaaatcggt tatgatgtag ggggaaaagc agcagcctcg
    10621 aggcctcatg ccaagtctgg tcagcaacag cctggggctt cctggaagat ggatgcgcag
    10681 agagaggggg aggaaggtta tgctttttcc tgctagcttc tttaactaca tctacaatac
    10741 tttatgcacg ggtaatagat cagttaatgg atttttcaga agcaaatcac taaaatttat
    10801 ctgatgtcct cggtttgccg aaatgtggta gtgatgtaaa ctataaattg gttgctgttg
    10861 aattatcttt cagtcatgca tcctgacctt aataaatgct ttactgtaca caatt
//
LOCUS       XR_004351812           10989 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X8, misc_RNA.
ACCESSION   XR_004351812
VERSION     XR_004351812.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10989
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10989
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..10989
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X8"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ctggaaggga ggaggctggc agcgaaagga gggagcagac gaccccgaat agcaaaggag
       61 acggaagcta agcacaccca gagctgcttt tagctggtaa tggacaagcc tcaaggttct
      121 tcccatgtga cttcactgcc tggactcttt agttgtgacg ccagagagtg aaggtcgctt
      181 ctcagtgttg ttcccctgcc cctgacacag tccctcagtt tccatgagtt cgagggagac
      241 cagcatattt ttggatgggc tcaagccaaa cggtgaggaa agtaatgcta cttagtggac
      301 taaataccag tgatgttgga gttacctgct tttggttgtt gtttttttgt ttgtttagag
      361 ttttctgtct ccttttgttc atagaagtca cttgggggat ggattatctg ataaatcctg
      421 gtgttctcgg agttcacgtt cactgcttcc cttatcctca tgtgaaggac taagatgatg
      481 attgtgggct ccggaaccat gttttagatt attgctgtct gatccagcag ccaggacagc
      541 cgaaaccaaa agcctctgaa gtcctgttca gcgatggaaa tgtggttggt cccacctttg
      601 tccctggagt tgtcaagcat gaaaatgggg aggagttcat cagggaagga cagagttcgg
      661 aggaagtctc ctaagaggag gatgtcacta gcttgcctag cacagtggtt gggagtctgg
      721 tactggctgc ataccctgca caggctcctc agcccctaac ctgtaaagtg gaggtgatgg
      781 ccatcccagc ttccaagtgc cgtggtgagg accgactgag ctgtgataca cgcatggggc
      841 cggcaccagg cctgatgcgt ggtgagtgat tagtggatat tgaggtccac gttcatgagg
      901 cggatgctgt ttggacagtg agaaaatgag ttccggcttt taaagagcag actttggaaa
      961 catcagagat gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg
     1021 aggtgatggc ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg
     1081 tacttaatca gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc
     1141 caggcggtaa acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga
     1201 ccagaccgct gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt
     1261 ttgagatcag tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg
     1321 aaagatccag cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca
     1381 ctaagcctgc gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc
     1441 ttgcattcca aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa
     1501 aaaattcttc ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga
     1561 gctcgcaatg tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga
     1621 gcgagccagt gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc
     1681 cagcctcccc agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa
     1741 gttatcttta ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg
     1801 taggcttgag cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt
     1861 ctgcttcctg gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt
     1921 aatagaaggc agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta
     1981 aattgtaagg agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga
     2041 aatgaaacag agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt
     2101 cctgccgagc cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg
     2161 gctgaaccac agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc
     2221 taacttgctc ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca
     2281 cccgtgacat ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg
     2341 tgatgggcca actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag
     2401 gctccctggc agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca
     2461 ggaatgtcct gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa
     2521 atggtattta agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca
     2581 cattcctttg gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc
     2641 ccagaaggtg tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg
     2701 gacttctttt aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg
     2761 gtgaaacctt ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga
     2821 taaggttgct gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt
     2881 gtgatctact ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct
     2941 tgtggtacaa ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt
     3001 gggaacccaa gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg
     3061 agttgttctg gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt
     3121 gctgcagtgg agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg
     3181 tgggaacccc cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat
     3241 taccatggca ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc
     3301 cctggagaga agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt
     3361 ttgctgcttt tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat
     3421 ctctgggact gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc
     3481 ctaaaattct gagccccgga agagtggaga tccggactgg ttttactata gattcttcag
     3541 gccgccgctc aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg
     3601 taagcaggca atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga
     3661 tcctggtctg tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg
     3721 acttgtctgt ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt
     3781 ctcgggtcca ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga
     3841 cagccctgtc tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg
     3901 gagccctcag ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga
     3961 ggtctggggt aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact
     4021 tttttttttg ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc
     4081 tgcagttctg ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag
     4141 ctcagagaga gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc
     4201 gctccgtcga taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca
     4261 agaaacaagt catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca
     4321 gaaatctgtc aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg
     4381 tggcacgggc ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac
     4441 ttgatggcgt aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc
     4501 tctgcgtatg tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt
     4561 tttttttttc tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg
     4621 ctcaagcctg accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc
     4681 tcccagcctc tacccccatt tccttctatc gggcagacag acagacacac aggctggttt
     4741 tccaagttgt ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg
     4801 agtgaggagg agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg
     4861 ttgaaacatt cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg
     4921 tgggctgcga gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg
     4981 ggaatggtga cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag
     5041 ggtcccagga tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta
     5101 gcatttagag attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct
     5161 gtgtctccat gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat
     5221 cattaactaa gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca
     5281 cttcctctga ttggtgggtg gaccaatggc aggtgaaaac ctttttttga ttggctgagg
     5341 gaagggtatc aaatctgaat ttgcatttca cttgcttaaa ggggaggggg gggaagccca
     5401 gcagctttct aaaatctgtt taggggtgtg cgtatgctcc tgtgtctgtg cctgcttctg
     5461 actgaccggt tgaagcctct tcctgtgcct ttttaacttc atgcactgta agggagagga
     5521 gctgagggct ccccaaactt ttgtttcgga ggggcagggg ttgggaagat gggcacgcag
     5581 agggttgacc aaactggaag aaaatactcg ttctttagtg ggaattttcc gatcagccac
     5641 acctcagcgt tgcggcaaaa taaatcttgg ctcccctgga aacgcatggg caaggtaggg
     5701 cagagctgct actgctgctg ttgccgccac cctgggcttc ctgctgactc cgggctcctc
     5761 cccggggaca ggagatttgc attgacgtcc caggctgtcc agagctgagc ccattatggg
     5821 aaggacctgc cttctggaag ctgctgctcc ccggtgcttg gaaaggtacc acatccgtct
     5881 ggttcacggc ggttatttca tttattcctc acctcaaccc tgcgaggaga gtcccatggc
     5941 cggttcaccc aagacaatgg ggattttttg tagctgaaat tgatggacta acaaacttca
     6001 gttttcctgg tctccttcct ctcgaaacag gaggcagagg agcttttgca tcaggaaaac
     6061 accatggaaa cgccatgagc attggtggtg gcggagtgag ggttaaacag tgagccttcc
     6121 tgggatcctt ttgatgccag tgtgtcggga gcctggagat ggagcgctca gccgagtggc
     6181 caggacgttc tgtcaacatg aaagcagcaa aaacagtttg tcggggctca gcgctgaccc
     6241 cgggctggtg tcattttcag gaagggcttg gcacaagaaa gaccaccgcc aggcacggga
     6301 ttgggggtga cgtcggataa ctcagtaggc ccctatagac ccttgaattt tagaatctga
     6361 aaagaaaatc agctgtttgt cttttattag atgagcttgg caaacaggat cacttcttga
     6421 actcctctca ctggtcccca acaagagaca tcttcccagg ttcagaaaac cctttgggat
     6481 ttctcggttg tggcttattg ccttggatgg agggcaggtc ccttctaggg ggcaggggtg
     6541 ggcctggcag tcctagtgcc cgttatgggg atatggagtc gtaggtttcc tctgctggca
     6601 tcacgtgaag acggtggatc cacatcacag gccttgagct gaagaccagc tcttgggcag
     6661 cccacttcag cctctccttt ccttattatc tcaaatcaaa gtcttatctt ctccccttca
     6721 tcttcctcat ttctttctta ggcgcagtag tgggcctgaa gtccttgacc tttgcgtctg
     6781 tgtgtgtgtc atcatggcgg ctcagggttc tagacttttc ttgaatctgc agcattgcgc
     6841 tttgtgcgcg tgacgccccc cccccccccc gctccgcccc gcccacccgg ccccgcccca
     6901 ccaggccttc ttcggagcaa gagagaacat gggcctccat cgccactgaa cctcagccaa
     6961 gccgtcatcc ccagcatctg gcctcccttc tctcctcccc cgctttcggc cagtgtctgg
     7021 ggtggaggag caaacaactt gtgggaggag atggagggac agcctggcct ggagctctct
     7081 gcctcctttc ctcgtgtgcc atttttcagc ctcacgcttc ctgtggatgg atgatgccag
     7141 cactgacatt tgtcgccgag cgcctcctct ccccaaggac ttccccgcgt gactcttttg
     7201 gggtctggaa agagtggctc tggggccttg ggagccagag gggacagggg gacctggccc
     7261 aggtcacagc agactgtgag acgggcgagg ggtgggagct ggccgaaccc acccaagcgc
     7321 aaaggcagcc ccggcccctt tgcgtcatgt ctttttcagc ctgaggagag agcaacttga
     7381 cctaaaaaaa ttgtatatat gtgggtgttg gatcctttgt gtctctttgt ccagaagctg
     7441 tgcatgtgat gagagcccag gtctctgtac tgtacagaga actgttgtcc ttcaggtttg
     7501 ttttcagaaa gatgtgatgg atgggccgtc cttgatgaga ccgcgtgccc gctgggactg
     7561 gccttcctcc aggatgctgg gcccggcgtg gtgtttcttc tgtcagtgga cgagaactca
     7621 gaggagttca gctccatgag taggtgacaa actcctggag actcagctga cgatggtgcc
     7681 ggtgtgcaga agacagttgt catcctgtgg gataagcgtg tgcccgtttg catttatttg
     7741 gaacaaaaaa aggagctgcc tggcagcctg gctctctgca aggtgctgtt gagcccctgg
     7801 tttgtgtggt tctgtgacca caagtgctga tggatgtggc gccatcccag tcttgtcggt
     7861 gaaccatcac cagcctgctt attggaaacc aggcgcagca aggaagctag gattcaacgc
     7921 cctccttccc tgcctcccag cccgcctcca aaagaattta atctgctgga caacaaacaa
     7981 tactgttata aaactttgaa aacaagaggg cgcggcctcc ctgacaagga gaagggcatg
     8041 ccgggtaatg ggcgagggag cctgccaggc ccgagatgga gccaggcaag agcccagttg
     8101 gctgggcacc tgggtgcccg cccctgccca gcccaccagc cgtgccatcc ccagtccaga
     8161 ggagaaggaa ccgaaacaaa agtgggggca gcggagctct tgaaaagggg aagttgtcct
     8221 gagactggca gacagaggtc ctgataacag aatgaggctg gcatagccgt gaaggtacag
     8281 ccaccagcct ggccagctgc aggggaagca ggagagaaag gtgctccaag ctggctttgg
     8341 actccagacc taccctctgt ctgcccagcc tcccaccccc cacctaggga agtggaacca
     8401 ggtcatgggc atgacccggt ccatgtgctc tgccaggagc cctgaaacca gcattcccag
     8461 cggcaggaag atggatgatc tgggctccac ttccggcgct cctcccccac tctggctgga
     8521 acttgcgtca gtcatatcaa ggaggccctc gggttgggtg ccagggagag caagctgctt
     8581 ccagccgcat gaaatcacct ggctacttgc aactagggga caaaatcagc atctggtttc
     8641 agagaaccga gagtatttta gaactcgaga gttggagccc aaactcagcc gtgcagtgga
     8701 gaccacagag gcaccagggt gctggagaac aaagcaagta tcgaagcacc ggctccttgc
     8761 agaaccaggc gtgctctcat ctccacccaa gtttaatgtg ttgtacagtc agtaataccc
     8821 acccccatct atgcagaaat attgcctagg actaccctca ccctcaatct tcctcataat
     8881 taagttcaag aacagaatga gacggtagtc cagctacaga acaggaggca gtgggcagaa
     8941 gagtaggagc acagactttg gagtcagacc tggaatcgac accattcact agtcatggga
     9001 ctgtggacaa gtttttgaac cacactgagg atcagtttct tctcctgcca aaaagggaat
     9061 actacctact ccgcaagact gttgtgagaa ttcaagagca cagcttggtg ttcaaatttt
     9121 atttccttct cttccctaga gcagcacatg atgttatgtc caggaggcgt aaaaagtaga
     9181 agggtttatc tagagtcctg aagaattggt agggaaccgg agagatgcag attcttcttt
     9241 ctcctggtta tggtatcaga ggaaatacag acatattttc ttagcttcaa acaaccaaaa
     9301 aagatggtgc aagtaggaga tgagaaatct aatttgaaca ccatttgcaa acctaatttt
     9361 caggcagaat ttgaaaacaa cacaaaacaa aactccattc ttttattaga ggattatcta
     9421 cttagtacaa ttataagaca ctaatctttt tgtgtcacag tagagaataa ataagattgg
     9481 caattaacgg ggtcatattt gaatgtcctg actgctcacg tatggctggg aaggcggagc
     9541 ccgtgatcta cgtgactagg acacatggaa gtgttgccct ggctcaggtg aaacccacct
     9601 ttgtgtagtg tctagagcct cacaggcaga aagggtgctt gtttcctgat gacgtgagaa
     9661 aatatgggaa aatgctttgc acactgtgaa atagtttaca aagcagggca atactaatgt
     9721 acatattaac ccagtttagt aacagctttg gctattttat ttcgtcatat atataataat
     9781 ctgtagggac tggttatgga attaagtaac ttagaattca tgagttttgt attgcgattg
     9841 tctgtgtaaa ttaccagctt tgactttcgt gttctttgag catcactttg taactcttct
     9901 ctgtgccttt ctaatggatc catatatcat gtcccgtcac aagtggaact gcaagaagac
     9961 acctctgctc ggggcagagg ctgggtcttc cgatcgcatc tcccttcttt cttcagtgag
    10021 atcctcttct tctggaagct ggtttcacat ggtggcttag atttttccat ctttgtatct
    10081 agcaccattt gaaatcagtg ttttaggagt aagaattgca gcacagcaaa aggccaaccg
    10141 cagaggagct gctgctcgtg ggatcagctt ccctccttct gccacctgag ccggttcaag
    10201 aaaaggaaga acttgagaat caaagtacac tcttgagtgt gttgggttgt ggaaggggac
    10261 agtgcaggga tggggtcgtg ttcaatagaa actcagaggc ttgagcagag ccagaggttg
    10321 tgattgtctt tctgttgaca gggagcggca acccctagca gtagcctgtt ggtaaggcct
    10381 ttgagcacac gcttgggcaa tgccgggttg ggtacttgat tgcaataggc aaggggaggg
    10441 gtgtggacca gaaggactat ctcatcacat cagcactgtc cacctgctcc tagatgccgt
    10501 gaaacattca gctgcagttg ccgagcagct gaaatcagac ttgccacctg cactgtcaag
    10561 gtgccggacc ccaccgagca ccactggacc catctcttac acaggctgac cgatttctcc
    10621 tggtgttcag agtctgtttt tgtctagcac catttgaaat cggttatgat gtagggggaa
    10681 aagcagcagc ctcgaggcct catgccaagt ctggtcagca acagcctggg gcttcctgga
    10741 agatggatgc gcagagagag ggggaggaag gttatgcttt ttcctgctag cttctttaac
    10801 tacatctaca atactttatg cacgggtaat agatcagtta atggattttt cagaagcaaa
    10861 tcactaaaat ttatctgatg tcctcggttt gccgaaatgt ggtagtgatg taaactataa
    10921 attggttgct gttgaattat ctttcagtca tgcatcctga ccttaataaa tgctttactg
    10981 tacacaatt
//
LOCUS       XR_004351813           16830 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X9, misc_RNA.
ACCESSION   XR_004351813
VERSION     XR_004351813.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16830
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16830
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16830
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X9"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg cgacgatggg
    10261 tggtccgatg ggcttcagga cttgatggcg taacccccgt cttcccccac gtacgtattt
    10321 gctgggatcg ggggcgatgt ctctgcgtat gtgggtgctc tgtctttctc accttctttc
    10381 ttgctttttg ctattttttt tttttttttt ctgagggagg ggttttttcc actttaattt
    10441 cttttccctt agtgtcagct gctcaagcct gaccgaggta gaggaaagag gagcaagccg
    10501 tccctggcgt cccacctgac ctcccagcct ctacccccat ttccttctat cgggcagaca
    10561 gacagacaca caggctggtt ttccaagttg tttgggtatc agtgtctgtc cgtccatatg
    10621 gttctcaggt agaaggtacg gagtgaggag gagaagtgtt gagaggaagg cgagaggggc
    10681 agctttctag gggttgcctt gttgaaacat tcggccctgg gaatccgggg ctgttgggga
    10741 gcaggtgggc aggatggggt gtgggctgcg agaagtgggg taaagctggt aggtttgtca
    10801 ctgcgtagtt ggggaaagtg gggaatggtg acgcagtcac tgttggatct tgttaggggc
    10861 tctgggggga caggtagtga gggtcccagg atctgtaggg ccagctgaga ggggttgagg
    10921 atgagctgag aagggaagct agcatttaga gattaaatgt catccttttg gcgttggaaa
    10981 gttgtttacc ttgtgctctc tgtgtctcca tgttggcacc cttccagttc acatgtgatg
    11041 gccttccttg tactgctgca tcattaacta agtgactgag ctggccttcc attggccagg
    11101 ggagggctct cactccagac acttcctctg attggtgggt ggaccaatgg caggtgaaaa
    11161 cctttttttg attggctgag ggaagggtat caaatctgaa tttgcatttc acttgcttaa
    11221 aggggagggg ggggaagccc agcagctttc taaaatctgt ttaggggtgt gcgtatgctc
    11281 ctgtgtctgt gcctgcttct gactgaccgg ttgaagcctc ttcctgtgcc tttttaactt
    11341 catgcactgt aagggagagg agctgagggc tccccaaact tttgtttcgg aggggcaggg
    11401 gttgggaaga tgggcacgca gagggttgac caaactggaa gaaaatactc gttctttagt
    11461 gggaattttc cgatcagcca cacctcagcg ttgcggcaaa ataaatcttg gctcccctgg
    11521 aaacgcatgg gcaaggtagg gcagagctgc tactgctgct gttgccgcca ccctgggctt
    11581 cctgctgact ccgggctcct ccccggggac aggagatttg cattgacgtc ccaggctgtc
    11641 cagagctgag cccattatgg gaaggacctg ccttctggaa gctgctgctc cccggtgctt
    11701 ggaaaggtac cacatccgtc tggttcacgg cggttatttc atttattcct cacctcaacc
    11761 ctgcgaggag agtcccatgg ccggttcacc caagacaatg gggatttttt gtagctgaaa
    11821 ttgatggact aacaaacttc agttttcctg gtctccttcc tctcgaaaca ggaggcagag
    11881 gagcttttgc atcaggaaaa caccatggaa acgccatgag cattggtggt ggcggagtga
    11941 gggttaaaca gtgagccttc ctgggatcct tttgatgcca gtgtgtcggg agcctggaga
    12001 tggagcgctc agccgagtgg ccaggacgtt ctgtcaacat gaaagcagca aaaacagttt
    12061 gtcggggctc agcgctgacc ccgggctggt gtcattttca ggaagggctt ggcacaagaa
    12121 agaccaccgc caggcacggg attgggggtg acgtcggata actcagtagg cccctataga
    12181 cccttgaatt ttagaatctg aaaagaaaat cagctgtttg tcttttatta gatgagcttg
    12241 gcaaacagga tcacttcttg aactcctctc actggtcccc aacaagagac atcttcccag
    12301 gttcagaaaa ccctttggga tttctcggtt gtggcttatt gccttggatg gagggcaggt
    12361 cccttctagg gggcaggggt gggcctggca gtcctagtgc ccgttatggg gatatggagt
    12421 cgtaggtttc ctctgctggc atcacgtgaa gacggtggat ccacatcaca ggccttgagc
    12481 tgaagaccag ctcttgggca gcccacttca gcctctcctt tccttattat ctcaaatcaa
    12541 agtcttatct tctccccttc atcttcctca tttctttctt aggcgcagta gtgggcctga
    12601 agtccttgac ctttgcgtct gtgtgtgtgt catcatggcg gctcagggtt ctagactttt
    12661 cttgaatctg cagcattgcg ctttgtgcgc gtgacgcccc cccccccccc cgctccgccc
    12721 cgcccacccg gccccgcccc accaggcctt cttcggagca agagagaaca tgggcctcca
    12781 tcgccactga acctcagcca agccgtcatc cccagcatct ggcctccctt ctctcctccc
    12841 ccgctttcgg ccagtgtctg gggtggagga gcaaacaact tgtgggagga gatggaggga
    12901 cagcctggcc tggagctctc tgcctccttt cctcgtgtgc catttttcag cctcacgctt
    12961 cctgtggatg gatgatgcca gcactgacat ttgtcgccga gcgcctcctc tccccaagga
    13021 cttccccgcg tgactctttt ggggtctgga aagagtggct ctggggcctt gggagccaga
    13081 ggggacaggg ggacctggcc caggtcacag cagactgtga gacgggcgag gggtgggagc
    13141 tggccgaacc cacccaagcg caaaggcagc cccggcccct ttgcgtcatg tctttttcag
    13201 cctgaggaga gagcaacttg acctaaaaaa attgtatata tgtgggtgtt ggatcctttg
    13261 tgtctctttg tccagaagct gtgcatgtga tgagagccca ggtctctgta ctgtacagag
    13321 aactgttgtc cttcaggttt gttttcagaa agatgtgatg gatgggccgt ccttgatgag
    13381 accgcgtgcc cgctgggact ggccttcctc caggatgctg ggcccggcgt ggtgtttctt
    13441 ctgtcagtgg acgagaactc agaggagttc agctccatga gtaggtgaca aactcctgga
    13501 gactcagctg acgatggtgc cggtgtgcag aagacagttg tcatcctgtg ggataagcgt
    13561 gtgcccgttt gcatttattt ggaacaaaaa aaggagctgc ctggcagcct ggctctctgc
    13621 aaggtgctgt tgagcccctg gtttgtgtgg ttctgtgacc acaagtgctg atggatgtgg
    13681 cgccatccca gtcttgtcgg tgaaccatca ccagcctgct tattggaaac caggcgcagc
    13741 aaggaagcta ggattcaacg ccctccttcc ctgcctccca gcccgcctcc aaaagaattt
    13801 aatctgctgg acaacaaaca atactgttat aaaactttga aaacaagagg gcgcggcctc
    13861 cctgacaagg agaagggcat gccgggtaat gggcgaggga gcctgccagg cccgagatgg
    13921 agccaggcaa gagcccagtt ggctgggcac ctgggtgccc gcccctgccc agcccaccag
    13981 ccgtgccatc cccagtccag aggagaagga accgaaacaa aagtgggggc agcggagctc
    14041 ttgaaaaggg gaagttgtcc tgagactggc agacagaggt cctgataaca gaatgaggct
    14101 ggcatagccg tgaaggtaca gccaccagcc tggccagctg caggggaagc aggagagaaa
    14161 ggtgctccaa gctggctttg gactccagac ctaccctctg tctgcccagc ctcccacccc
    14221 ccacctaggg aagtggaacc aggtcatggg catgacccgg tccatgtgct ctgccaggag
    14281 ccctgaaacc agcattccca gcggcaggaa gatggatgat ctgggctcca cttccggcgc
    14341 tcctccccca ctctggctgg aacttgcgtc agtcatatca aggaggccct cgggttgggt
    14401 gccagggaga gcaagctgct tccagccgca tgaaatcacc tggctacttg caactagggg
    14461 acaaaatcag catctggttt cagagaaccg agagtatttt agaactcgag agttggagcc
    14521 caaactcagc cgtgcagtgg agaccacaga ggcaccaggg tgctggagaa caaagcaagt
    14581 atcgaagcac cggctccttg cagaaccagg cgtgctctca tctccaccca agtttaatgt
    14641 gttgtacagt cagtaatacc cacccccatc tatgcagaaa tattgcctag gactaccctc
    14701 accctcaatc ttcctcataa ttaagttcaa gaacagaatg agacggtagt ccagctacag
    14761 aacaggaggc agtgggcaga agagtaggag cacagacttt ggagtcagac ctggaatcga
    14821 caccattcac tagtcatggg actgtggaca agtttttgaa ccacactgag gatcagtttc
    14881 ttctcctgcc aaaaagggaa tactacctac tccgcaagac tgttgtgaga attcaagagc
    14941 acagcttggt gttcaaattt tatttccttc tcttccctag agcagcacat gatgttatgt
    15001 ccaggaggcg taaaaagtag aagggtttat ctagagtcct gaagaattgg tagggaaccg
    15061 gagagatgca gattcttctt tctcctggtt atggtatcag aggaaataca gacatatttt
    15121 cttagcttca aacaaccaaa aaagatggtg caagtaggag atgagaaatc taatttgaac
    15181 accatttgca aacctaattt tcaggcagaa tttgaaaaca acacaaaaca aaactccatt
    15241 cttttattag aggattatct acttagtaca attataagac actaatcttt ttgtgtcaca
    15301 gtagagaata aataagattg gcaattaacg gggtcatatt tgaatgtcct gactgctcac
    15361 gtatggctgg gaaggcggag cccgtgatct acgtgactag gacacatgga agtgttgccc
    15421 tggctcaggt gaaacccacc tttgtgtagt gtctagagcc tcacaggcag aaagggtgct
    15481 tgtttcctga tgacgtgaga aaatatggga aaatgctttg cacactgtga aatagtttac
    15541 aaagcagggc aatactaatg tacatattaa cccagtttag taacagcttt ggctatttta
    15601 tttcgtcata tatataataa tctgtaggga ctggttatgg aattaagtaa cttagaattc
    15661 atgagttttg tattgcgatt gtctgtgtaa attaccagct ttgactttcg tgttctttga
    15721 gcatcacttt gtaactcttc tctgtgcctt tctaatggat ccatatatca tgtcccgtca
    15781 caagtggaac tgcaagaaga cacctctgct cggggcagag gctgggtctt ccgatcgcat
    15841 ctcccttctt tcttcagtga gatcctcttc ttctggaagc tggtttcaca tggtggctta
    15901 gatttttcca tctttgtatc tagcaccatt tgaaatcagt gttttaggag taagaattgc
    15961 agcacagcaa aaggccaacc gcagaggagc tgctgctcgt gggatcagct tccctccttc
    16021 tgccacctga gccggttcaa gaaaaggaag aacttgagaa tcaaagtaca ctcttgagtg
    16081 tgttgggttg tggaagggga cagtgcaggg atggggtcgt gttcaataga aactcagagg
    16141 cttgagcaga gccagaggtt gtgattgtct ttctgttgac agggagcggc aacccctagc
    16201 agtagcctgt tggtaaggcc tttgagcaca cgcttgggca atgccgggtt gggtacttga
    16261 ttgcaatagg caaggggagg ggtgtggacc agaaggacta tctcatcaca tcagcactgt
    16321 ccacctgctc ctagatgccg tgaaacattc agctgcagtt gccgagcagc tgaaatcaga
    16381 cttgccacct gcactgtcaa ggtgccggac cccaccgagc accactggac ccatctctta
    16441 cacaggctga ccgatttctc ctggtgttca gagtctgttt ttgtctagca ccatttgaaa
    16501 tcggttatga tgtaggggga aaagcagcag cctcgaggcc tcatgccaag tctggtcagc
    16561 aacagcctgg ggcttcctgg aagatggatg cgcagagaga gggggaggaa ggttatgctt
    16621 tttcctgcta gcttctttaa ctacatctac aatactttat gcacgggtaa tagatcagtt
    16681 aatggatttt tcagaagcaa atcactaaaa tttatctgat gtcctcggtt tgccgaaatg
    16741 tggtagtgat gtaaactata aattggttgc tgttgaatta tctttcagtc atgcatcctg
    16801 accttaataa atgctttact gtacacaatt
//
LOCUS       XR_004351815           10877 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X10, misc_RNA.
ACCESSION   XR_004351815
VERSION     XR_004351815.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10877
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10877
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..10877
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X10"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ctggaaggga ggaggctggc agcgaaagga gggagcagac gaccccgaat agcaaaggag
       61 acggaagcta agcacaccca gagctgcttt tagctggtaa tggacaagcc tcaaggttct
      121 tcccatgtga cttcactgcc tggactcttt agttgtgacg ccagagagtg aaggtcgctt
      181 ctcagtgttg ttcccctgcc cctgacacag tccctcagtt tccatgagtt cgagggagac
      241 cagcatattt ttggatgggc tcaagccaaa cgaagtcact tgggggatgg attatctgat
      301 aaatcctggt gttctcggag ttcacgttca ctgcttccct tatcctcatg tgaaggacta
      361 agatgatgat tgtgggctcc ggaaccatgt tttagattat tgctgtctga tccagcagcc
      421 aggacagccg aaaccaaaag cctctgaagt cctgttcagc gatggaaatg tggttggtcc
      481 cacctttgtc cctggagttg tcaagcatga aaatggggag gagttcatca gggaaggaca
      541 gagttcggag gaagtctcct aagaggagga tgtcactagc ttgcctagca cagtggttgg
      601 gagtctggta ctggctgcat accctgcaca ggctcctcag cccctaacct gtaaagtgga
      661 ggtgatggcc atcccagctt ccaagtgccg tggtgaggac cgactgagct gtgatacacg
      721 catggggccg gcaccaggcc tgatgcgtgg tgagtgatta gtggatattg aggtccacgt
      781 tcatgaggcg gatgctgttt ggacagtgag aaaatgagtt ccggctttta aagagcagac
      841 tttggaaaca tcagagatgc taatttggga atgcttgtag ggtcctctca cagaacctgt
      901 acgtcttgag gtgatggcct gtgtcttata cttcttctgc gcggaatgtg gccttagcat
      961 ctagtaggta cttaatcagt gatttacctc ctggggttac cgagtgccct ttgtctgctc
     1021 ctcccttcca ggcggtaaac agaaacacct tctccctgtg gacctgaacc tgtcagtgct
     1081 gcccgagacc agaccgctgc ctgatttatc tagaacaccc actcgagccc ttgatactcg
     1141 tgtggagttt gagatcagtc ccctgtacag agctccctgt cttgagagaa atgacttctt
     1201 tcctgatgaa agatccagcc cgtgttcagg aggccctaat gaggaaatgg gaggacagag
     1261 aggctgcact aagcctgcgc tgttggctga tgcccgccga actggagttc gtggcaattc
     1321 cagagtgctt gcattccaaa cccagggcga gggctgggta aaagtccagc tcatcccctt
     1381 taaagaaaaa aattcttcct ctctgacatt tcgaggtttt gacccagatc agtcagaggc
     1441 cacggagagc tcgcaatgtc tggagagtgt gtttagttcc cgaggcctgg agctgcagag
     1501 aagccggagc gagccagtga cctgctgggc ttgagttgaa gccctgcctt ttcaagtgtg
     1561 ccctggccca gcctccccag acctcacagg gtggacggaa ggagccagca ccttcccctc
     1621 actccaaagt tatctttacc ccctgaaatc aaacatcgca tgcagcaccc tgtaaaactg
     1681 cttccttgta ggcttgagcg tgcttgctga gtaaacatcc tcccatgttt ttggaactga
     1741 atccatttct gcttcctggt catcccatgc gggttctttc tgttctgggt gccatgcaga
     1801 atcaggttaa tagaaggcag acctagcgtt gggcaggggc acctaaaatg acagtttcaa
     1861 ccttagtaaa ttgtaaggag agtaacagcg tcgtgggaag aaagagaaaa gacttagacg
     1921 aaaaatgaaa tgaaacagag cctcccaaac atagtgctgc catcatgctt tgcaagtcag
     1981 agttggttcc tgccgagccc tgagacgggg accttccttt gcatgggctc aagctcagtt
     2041 gtgcggtggc tgaaccacag tcagcctccg tctgtaggtt gtgtggctgc gtctggccct
     2101 cctgacccta acttgctctt gccccgtctc tcgtgactta tttgcctctt ctctctcact
     2161 tccacccacc cgtgacatct ccatcgccat ggcattgagc agccacgtca tccaccatgt
     2221 tcacggggtg atgggccaac tctgtgctga gccctacttc cttctcgttc tccctcctga
     2281 agcaggaggc tccctggcag agctcaaagc cctttgttta tttgatcctg ggcgtcttgg
     2341 ataaatcagg aatgtcctga catgaactta ggcatgtttt tcttccatgg aaaaggaaac
     2401 tacggcaaat ggtatttaag taggcagagg accattccgg gggacttgcg ttggtgccat
     2461 caaggccaca ttcctttggt catcagacca gtaggtgact tctttattgg catgctctac
     2521 cctggagccc agaaggtgtg aatttgaagc actttctccc ctgctgagag cttggcacag
     2581 atgctctgga cttcttttaa agccatggag taccatggtt gtcttccagg tggtcttctt
     2641 tctgctgggt gaaaccttgg cccagagtag ttgcttgaag aaggctgctt gggagttggg
     2701 gtacaggata aggttgctgc ctggcctctc attctccagc cgtcttgaag ttgcaatgat
     2761 ctcgatgtgt gatctacttt gagtcagctg ccccaggacc tgaacacttc cgatcagggc
     2821 taggctcttg tggtacaacc ggtcgccaga aacctttgcg ggtctgcttt ctttggatgt
     2881 ggcgttgtgg gaacccaaga attcctgagt ctgtctaggt atatggagtc cagtgagttt
     2941 agcatctgag ttgttctgga actatttctg ggtctggggg caggaaaatg ttgggagcta
     3001 tgtgctttgc tgcagtggag acctgtcagt aaccaaaaaa caagcccagt cagtctccag
     3061 agcattggtg ggaacccccc ccccccccag ctccctgtga gagtttccag gtgtgaatgc
     3121 ccatgtatta ccatggcagg ggcagtgcgg ggtgggctgg cgggtgctca tctcatttgg
     3181 ccacctgccc tggagagaag aagccagtcg ttggccactg caggtccagg cttggctgcc
     3241 gctctgtttt gctgcttttc atgttgtcag aggatcttct tgggaacaaa tgactcagca
     3301 acctgaatct ctgggactga gtagcctaag tgccttttga gaagtgattg gacctatctg
     3361 cacaggccct aaaattctga gccccggaag agtggagatc cggactggtt ttactataga
     3421 ttcttcaggc cgccgctcaa tttggtttct ccaattcctg ccccagtaga aggagctcac
     3481 tcatggggta agcaggcaat gttttaatta tgctttttgt ccttagaaaa ttccaggaag
     3541 aaaaaagatc ctggtctgtg gccaaaaaag cagaaaacaa cgaaaatcag cgacggctgt
     3601 aattctggac ttgtctgtgg cagaaagagt taataggacg gtggtctcag ggtgggggcc
     3661 gttatattct cgggtccagg agaagctcac gtggttcaag aaaagatgac gccacattta
     3721 gtgtgggaca gccctgtctg ggttctgggc gctgtcactc aaagagttaa gctagtctta
     3781 tggctgggga gccctcaggg aaggcctgag cctgcaggga ccaggccctc tacgccccag
     3841 agcagtgagg tctggggtaa aagaggggct gagaagtgtg gccaggaaag ccgagtgtag
     3901 gcccaacttt tttttttgcc ttgtttgacc agccttggca ctgccctctg gctctccagg
     3961 ggaaaagctg cagttctgct cttgcaacac aaggagcaga ctggagaatt tagatctgcg
     4021 tcacagagct cagagagaga gagaggagag aggggagaga gagagggaga gagagagaga
     4081 gcgcgagcgc tccgtcgata ggtctgctag caacagccgt gctgcagcag agagagagag
     4141 agaaatcaag aaacaagtca tagcaacacc gggcaccagg ttctgccagc tcacttgcca
     4201 agcgttcaga aatctgtcag gggccggagg cctctgggta gcctaggcta aggagatgac
     4261 acgcaaggtg gcacgggcgg ttcccgcggg gaggaggcga cgatgggtgg tccgatgggc
     4321 ttcaggactt gatggcgtaa cccccgtctt cccccacgta cgtatttgct gggatcgggg
     4381 gcgatgtctc tgcgtatgtg ggtgctctgt ctttctcacc ttctttcttg ctttttgcta
     4441 tttttttttt tttttttctg agggaggggt tttttccact ttaatttctt ttcccttagt
     4501 gtcagctgct caagcctgac cgaggtagag gaaagaggag caagccgtcc ctggcgtccc
     4561 acctgacctc ccagcctcta cccccatttc cttctatcgg gcagacagac agacacacag
     4621 gctggttttc caagttgttt gggtatcagt gtctgtccgt ccatatggtt ctcaggtaga
     4681 aggtacggag tgaggaggag aagtgttgag aggaaggcga gaggggcagc tttctagggg
     4741 ttgccttgtt gaaacattcg gccctgggaa tccggggctg ttggggagca ggtgggcagg
     4801 atggggtgtg ggctgcgaga agtggggtaa agctggtagg tttgtcactg cgtagttggg
     4861 gaaagtgggg aatggtgacg cagtcactgt tggatcttgt taggggctct ggggggacag
     4921 gtagtgaggg tcccaggatc tgtagggcca gctgagaggg gttgaggatg agctgagaag
     4981 ggaagctagc atttagagat taaatgtcat ccttttggcg ttggaaagtt gtttaccttg
     5041 tgctctctgt gtctccatgt tggcaccctt ccagttcaca tgtgatggcc ttccttgtac
     5101 tgctgcatca ttaactaagt gactgagctg gccttccatt ggccagggga gggctctcac
     5161 tccagacact tcctctgatt ggtgggtgga ccaatggcag gtgaaaacct ttttttgatt
     5221 ggctgaggga agggtatcaa atctgaattt gcatttcact tgcttaaagg ggaggggggg
     5281 gaagcccagc agctttctaa aatctgttta ggggtgtgcg tatgctcctg tgtctgtgcc
     5341 tgcttctgac tgaccggttg aagcctcttc ctgtgccttt ttaacttcat gcactgtaag
     5401 ggagaggagc tgagggctcc ccaaactttt gtttcggagg ggcaggggtt gggaagatgg
     5461 gcacgcagag ggttgaccaa actggaagaa aatactcgtt ctttagtggg aattttccga
     5521 tcagccacac ctcagcgttg cggcaaaata aatcttggct cccctggaaa cgcatgggca
     5581 aggtagggca gagctgctac tgctgctgtt gccgccaccc tgggcttcct gctgactccg
     5641 ggctcctccc cggggacagg agatttgcat tgacgtccca ggctgtccag agctgagccc
     5701 attatgggaa ggacctgcct tctggaagct gctgctcccc ggtgcttgga aaggtaccac
     5761 atccgtctgg ttcacggcgg ttatttcatt tattcctcac ctcaaccctg cgaggagagt
     5821 cccatggccg gttcacccaa gacaatgggg attttttgta gctgaaattg atggactaac
     5881 aaacttcagt tttcctggtc tccttcctct cgaaacagga ggcagaggag cttttgcatc
     5941 aggaaaacac catggaaacg ccatgagcat tggtggtggc ggagtgaggg ttaaacagtg
     6001 agccttcctg ggatcctttt gatgccagtg tgtcgggagc ctggagatgg agcgctcagc
     6061 cgagtggcca ggacgttctg tcaacatgaa agcagcaaaa acagtttgtc ggggctcagc
     6121 gctgaccccg ggctggtgtc attttcagga agggcttggc acaagaaaga ccaccgccag
     6181 gcacgggatt gggggtgacg tcggataact cagtaggccc ctatagaccc ttgaatttta
     6241 gaatctgaaa agaaaatcag ctgtttgtct tttattagat gagcttggca aacaggatca
     6301 cttcttgaac tcctctcact ggtccccaac aagagacatc ttcccaggtt cagaaaaccc
     6361 tttgggattt ctcggttgtg gcttattgcc ttggatggag ggcaggtccc ttctaggggg
     6421 caggggtggg cctggcagtc ctagtgcccg ttatggggat atggagtcgt aggtttcctc
     6481 tgctggcatc acgtgaagac ggtggatcca catcacaggc cttgagctga agaccagctc
     6541 ttgggcagcc cacttcagcc tctcctttcc ttattatctc aaatcaaagt cttatcttct
     6601 ccccttcatc ttcctcattt ctttcttagg cgcagtagtg ggcctgaagt ccttgacctt
     6661 tgcgtctgtg tgtgtgtcat catggcggct cagggttcta gacttttctt gaatctgcag
     6721 cattgcgctt tgtgcgcgtg acgccccccc ccccccccgc tccgccccgc ccacccggcc
     6781 ccgccccacc aggccttctt cggagcaaga gagaacatgg gcctccatcg ccactgaacc
     6841 tcagccaagc cgtcatcccc agcatctggc ctcccttctc tcctcccccg ctttcggcca
     6901 gtgtctgggg tggaggagca aacaacttgt gggaggagat ggagggacag cctggcctgg
     6961 agctctctgc ctcctttcct cgtgtgccat ttttcagcct cacgcttcct gtggatggat
     7021 gatgccagca ctgacatttg tcgccgagcg cctcctctcc ccaaggactt ccccgcgtga
     7081 ctcttttggg gtctggaaag agtggctctg gggccttggg agccagaggg gacaggggga
     7141 cctggcccag gtcacagcag actgtgagac gggcgagggg tgggagctgg ccgaacccac
     7201 ccaagcgcaa aggcagcccc ggcccctttg cgtcatgtct ttttcagcct gaggagagag
     7261 caacttgacc taaaaaaatt gtatatatgt gggtgttgga tcctttgtgt ctctttgtcc
     7321 agaagctgtg catgtgatga gagcccaggt ctctgtactg tacagagaac tgttgtcctt
     7381 caggtttgtt ttcagaaaga tgtgatggat gggccgtcct tgatgagacc gcgtgcccgc
     7441 tgggactggc cttcctccag gatgctgggc ccggcgtggt gtttcttctg tcagtggacg
     7501 agaactcaga ggagttcagc tccatgagta ggtgacaaac tcctggagac tcagctgacg
     7561 atggtgccgg tgtgcagaag acagttgtca tcctgtggga taagcgtgtg cccgtttgca
     7621 tttatttgga acaaaaaaag gagctgcctg gcagcctggc tctctgcaag gtgctgttga
     7681 gcccctggtt tgtgtggttc tgtgaccaca agtgctgatg gatgtggcgc catcccagtc
     7741 ttgtcggtga accatcacca gcctgcttat tggaaaccag gcgcagcaag gaagctagga
     7801 ttcaacgccc tccttccctg cctcccagcc cgcctccaaa agaatttaat ctgctggaca
     7861 acaaacaata ctgttataaa actttgaaaa caagagggcg cggcctccct gacaaggaga
     7921 agggcatgcc gggtaatggg cgagggagcc tgccaggccc gagatggagc caggcaagag
     7981 cccagttggc tgggcacctg ggtgcccgcc cctgcccagc ccaccagccg tgccatcccc
     8041 agtccagagg agaaggaacc gaaacaaaag tgggggcagc ggagctcttg aaaaggggaa
     8101 gttgtcctga gactggcaga cagaggtcct gataacagaa tgaggctggc atagccgtga
     8161 aggtacagcc accagcctgg ccagctgcag gggaagcagg agagaaaggt gctccaagct
     8221 ggctttggac tccagaccta ccctctgtct gcccagcctc ccacccccca cctagggaag
     8281 tggaaccagg tcatgggcat gacccggtcc atgtgctctg ccaggagccc tgaaaccagc
     8341 attcccagcg gcaggaagat ggatgatctg ggctccactt ccggcgctcc tcccccactc
     8401 tggctggaac ttgcgtcagt catatcaagg aggccctcgg gttgggtgcc agggagagca
     8461 agctgcttcc agccgcatga aatcacctgg ctacttgcaa ctaggggaca aaatcagcat
     8521 ctggtttcag agaaccgaga gtattttaga actcgagagt tggagcccaa actcagccgt
     8581 gcagtggaga ccacagaggc accagggtgc tggagaacaa agcaagtatc gaagcaccgg
     8641 ctccttgcag aaccaggcgt gctctcatct ccacccaagt ttaatgtgtt gtacagtcag
     8701 taatacccac ccccatctat gcagaaatat tgcctaggac taccctcacc ctcaatcttc
     8761 ctcataatta agttcaagaa cagaatgaga cggtagtcca gctacagaac aggaggcagt
     8821 gggcagaaga gtaggagcac agactttgga gtcagacctg gaatcgacac cattcactag
     8881 tcatgggact gtggacaagt ttttgaacca cactgaggat cagtttcttc tcctgccaaa
     8941 aagggaatac tacctactcc gcaagactgt tgtgagaatt caagagcaca gcttggtgtt
     9001 caaattttat ttccttctct tccctagagc agcacatgat gttatgtcca ggaggcgtaa
     9061 aaagtagaag ggtttatcta gagtcctgaa gaattggtag ggaaccggag agatgcagat
     9121 tcttctttct cctggttatg gtatcagagg aaatacagac atattttctt agcttcaaac
     9181 aaccaaaaaa gatggtgcaa gtaggagatg agaaatctaa tttgaacacc atttgcaaac
     9241 ctaattttca ggcagaattt gaaaacaaca caaaacaaaa ctccattctt ttattagagg
     9301 attatctact tagtacaatt ataagacact aatctttttg tgtcacagta gagaataaat
     9361 aagattggca attaacgggg tcatatttga atgtcctgac tgctcacgta tggctgggaa
     9421 ggcggagccc gtgatctacg tgactaggac acatggaagt gttgccctgg ctcaggtgaa
     9481 acccaccttt gtgtagtgtc tagagcctca caggcagaaa gggtgcttgt ttcctgatga
     9541 cgtgagaaaa tatgggaaaa tgctttgcac actgtgaaat agtttacaaa gcagggcaat
     9601 actaatgtac atattaaccc agtttagtaa cagctttggc tattttattt cgtcatatat
     9661 ataataatct gtagggactg gttatggaat taagtaactt agaattcatg agttttgtat
     9721 tgcgattgtc tgtgtaaatt accagctttg actttcgtgt tctttgagca tcactttgta
     9781 actcttctct gtgcctttct aatggatcca tatatcatgt cccgtcacaa gtggaactgc
     9841 aagaagacac ctctgctcgg ggcagaggct gggtcttccg atcgcatctc ccttctttct
     9901 tcagtgagat cctcttcttc tggaagctgg tttcacatgg tggcttagat ttttccatct
     9961 ttgtatctag caccatttga aatcagtgtt ttaggagtaa gaattgcagc acagcaaaag
    10021 gccaaccgca gaggagctgc tgctcgtggg atcagcttcc ctccttctgc cacctgagcc
    10081 ggttcaagaa aaggaagaac ttgagaatca aagtacactc ttgagtgtgt tgggttgtgg
    10141 aaggggacag tgcagggatg gggtcgtgtt caatagaaac tcagaggctt gagcagagcc
    10201 agaggttgtg attgtctttc tgttgacagg gagcggcaac ccctagcagt agcctgttgg
    10261 taaggccttt gagcacacgc ttgggcaatg ccgggttggg tacttgattg caataggcaa
    10321 ggggaggggt gtggaccaga aggactatct catcacatca gcactgtcca cctgctccta
    10381 gatgccgtga aacattcagc tgcagttgcc gagcagctga aatcagactt gccacctgca
    10441 ctgtcaaggt gccggacccc accgagcacc actggaccca tctcttacac aggctgaccg
    10501 atttctcctg gtgttcagag tctgtttttg tctagcacca tttgaaatcg gttatgatgt
    10561 agggggaaaa gcagcagcct cgaggcctca tgccaagtct ggtcagcaac agcctggggc
    10621 ttcctggaag atggatgcgc agagagaggg ggaggaaggt tatgcttttt cctgctagct
    10681 tctttaacta catctacaat actttatgca cgggtaatag atcagttaat ggatttttca
    10741 gaagcaaatc actaaaattt atctgatgtc ctcggtttgc cgaaatgtgg tagtgatgta
    10801 aactataaat tggttgctgt tgaattatct ttcagtcatg catcctgacc ttaataaatg
    10861 ctttactgta cacaatt
//
LOCUS       XR_004351816           10518 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X11, misc_RNA.
ACCESSION   XR_004351816
VERSION     XR_004351816.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10518
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10518
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..10518
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X11"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 cagctggaag ggaggaggct ggcagcgaaa ggagggagca gacgaccccg aatagcaaag
       61 gagacggaag ctaagcacac ccagagctgc ttttagctgg taatggaaat gtggttggtc
      121 ccacctttgt ccctggagtt gtcaagcatg aaaatgggga ggagttcatc agggaaggac
      181 agagttcgga ggaagtctcc taagaggagg atgtcactag cttgcctagc acagtggttg
      241 ggagtctggt actggctgca taccctgcac aggctcctca gcccctaacc tgtaaagtgg
      301 aggtgatggc catcccagct tccaagtgcc gtggtgagga ccgactgagc tgtgatacac
      361 gcatggggcc ggcaccaggc ctgatgcgtg gtgagtgatt agtggatatt gaggtccacg
      421 ttcatgaggc ggatgctgtt tggacagtga gaaaatgagt tccggctttt aaagagcaga
      481 ctttggaaac atcagagatg ctaatttggg aatgcttgta gggtcctctc acagaacctg
      541 tacgtcttga ggtgatggcc tgtgtcttat acttcttctg cgcggaatgt ggccttagca
      601 tctagtaggt acttaatcag tgatttacct cctggggtta ccgagtgccc tttgtctgct
      661 cctcccttcc aggcggtaaa cagaaacacc ttctccctgt ggacctgaac ctgtcagtgc
      721 tgcccgagac cagaccgctg cctgatttat ctagaacacc cactcgagcc cttgatactc
      781 gtgtggagtt tgagatcagt cccctgtaca gagctccctg tcttgagaga aatgacttct
      841 ttcctgatga aagatccagc ccgtgttcag gaggccctaa tgaggaaatg ggaggacaga
      901 gaggctgcac taagcctgcg ctgttggctg atgcccgccg aactggagtt cgtggcaatt
      961 ccagagtgct tgcattccaa acccagggcg agggctgggt aaaagtccag ctcatcccct
     1021 ttaaagaaaa aaattcttcc tctctgacat ttcgaggttt tgacccagat cagtcagagg
     1081 ccacggagag ctcgcaatgt ctggagagtg tgtttagttc ccgaggcctg gagctgcaga
     1141 gaagccggag cgagccagtg acctgctggg cttgagttga agccctgcct tttcaagtgt
     1201 gccctggccc agcctcccca gacctcacag ggtggacgga aggagccagc accttcccct
     1261 cactccaaag ttatctttac cccctgaaat caaacatcgc atgcagcacc ctgtaaaact
     1321 gcttccttgt aggcttgagc gtgcttgctg agtaaacatc ctcccatgtt tttggaactg
     1381 aatccatttc tgcttcctgg tcatcccatg cgggttcttt ctgttctggg tgccatgcag
     1441 aatcaggtta atagaaggca gacctagcgt tgggcagggg cacctaaaat gacagtttca
     1501 accttagtaa attgtaagga gagtaacagc gtcgtgggaa gaaagagaaa agacttagac
     1561 gaaaaatgaa atgaaacaga gcctcccaaa catagtgctg ccatcatgct ttgcaagtca
     1621 gagttggttc ctgccgagcc ctgagacggg gaccttcctt tgcatgggct caagctcagt
     1681 tgtgcggtgg ctgaaccaca gtcagcctcc gtctgtaggt tgtgtggctg cgtctggccc
     1741 tcctgaccct aacttgctct tgccccgtct ctcgtgactt atttgcctct tctctctcac
     1801 ttccacccac ccgtgacatc tccatcgcca tggcattgag cagccacgtc atccaccatg
     1861 ttcacggggt gatgggccaa ctctgtgctg agccctactt ccttctcgtt ctccctcctg
     1921 aagcaggagg ctccctggca gagctcaaag ccctttgttt atttgatcct gggcgtcttg
     1981 gataaatcag gaatgtcctg acatgaactt aggcatgttt ttcttccatg gaaaaggaaa
     2041 ctacggcaaa tggtatttaa gtaggcagag gaccattccg ggggacttgc gttggtgcca
     2101 tcaaggccac attcctttgg tcatcagacc agtaggtgac ttctttattg gcatgctcta
     2161 ccctggagcc cagaaggtgt gaatttgaag cactttctcc cctgctgaga gcttggcaca
     2221 gatgctctgg acttctttta aagccatgga gtaccatggt tgtcttccag gtggtcttct
     2281 ttctgctggg tgaaaccttg gcccagagta gttgcttgaa gaaggctgct tgggagttgg
     2341 ggtacaggat aaggttgctg cctggcctct cattctccag ccgtcttgaa gttgcaatga
     2401 tctcgatgtg tgatctactt tgagtcagct gccccaggac ctgaacactt ccgatcaggg
     2461 ctaggctctt gtggtacaac cggtcgccag aaacctttgc gggtctgctt tctttggatg
     2521 tggcgttgtg ggaacccaag aattcctgag tctgtctagg tatatggagt ccagtgagtt
     2581 tagcatctga gttgttctgg aactatttct gggtctgggg gcaggaaaat gttgggagct
     2641 atgtgctttg ctgcagtgga gacctgtcag taaccaaaaa acaagcccag tcagtctcca
     2701 gagcattggt gggaaccccc ccccccccca gctccctgtg agagtttcca ggtgtgaatg
     2761 cccatgtatt accatggcag gggcagtgcg gggtgggctg gcgggtgctc atctcatttg
     2821 gccacctgcc ctggagagaa gaagccagtc gttggccact gcaggtccag gcttggctgc
     2881 cgctctgttt tgctgctttt catgttgtca gaggatcttc ttgggaacaa atgactcagc
     2941 aacctgaatc tctgggactg agtagcctaa gtgccttttg agaagtgatt ggacctatct
     3001 gcacaggccc taaaattctg agccccggaa gagtggagat ccggactggt tttactatag
     3061 attcttcagg ccgccgctca atttggtttc tccaattcct gccccagtag aaggagctca
     3121 ctcatggggt aagcaggcaa tgttttaatt atgctttttg tccttagaaa attccaggaa
     3181 gaaaaaagat cctggtctgt ggccaaaaaa gcagaaaaca acgaaaatca gcgacggctg
     3241 taattctgga cttgtctgtg gcagaaagag ttaataggac ggtggtctca gggtgggggc
     3301 cgttatattc tcgggtccag gagaagctca cgtggttcaa gaaaagatga cgccacattt
     3361 agtgtgggac agccctgtct gggttctggg cgctgtcact caaagagtta agctagtctt
     3421 atggctgggg agccctcagg gaaggcctga gcctgcaggg accaggccct ctacgcccca
     3481 gagcagtgag gtctggggta aaagaggggc tgagaagtgt ggccaggaaa gccgagtgta
     3541 ggcccaactt ttttttttgc cttgtttgac cagccttggc actgccctct ggctctccag
     3601 gggaaaagct gcagttctgc tcttgcaaca caaggagcag actggagaat ttagatctgc
     3661 gtcacagagc tcagagagag agagaggaga gaggggagag agagagggag agagagagag
     3721 agcgcgagcg ctccgtcgat aggtctgcta gcaacagccg tgctgcagca gagagagaga
     3781 gagaaatcaa gaaacaagtc atagcaacac cgggcaccag gttctgccag ctcacttgcc
     3841 aagcgttcag aaatctgtca ggggccggag gcctctgggt agcctaggct aaggagatga
     3901 cacgcaaggt ggcacgggcg gttcccgcgg ggaggaggcg acgatgggtg gtccgatggg
     3961 cttcaggact tgatggcgta acccccgtct tcccccacgt acgtatttgc tgggatcggg
     4021 ggcgatgtct ctgcgtatgt gggtgctctg tctttctcac cttctttctt gctttttgct
     4081 attttttttt ttttttttct gagggagggg ttttttccac tttaatttct tttcccttag
     4141 tgtcagctgc tcaagcctga ccgaggtaga ggaaagagga gcaagccgtc cctggcgtcc
     4201 cacctgacct cccagcctct acccccattt ccttctatcg ggcagacaga cagacacaca
     4261 ggctggtttt ccaagttgtt tgggtatcag tgtctgtccg tccatatggt tctcaggtag
     4321 aaggtacgga gtgaggagga gaagtgttga gaggaaggcg agaggggcag ctttctaggg
     4381 gttgccttgt tgaaacattc ggccctggga atccggggct gttggggagc aggtgggcag
     4441 gatggggtgt gggctgcgag aagtggggta aagctggtag gtttgtcact gcgtagttgg
     4501 ggaaagtggg gaatggtgac gcagtcactg ttggatcttg ttaggggctc tggggggaca
     4561 ggtagtgagg gtcccaggat ctgtagggcc agctgagagg ggttgaggat gagctgagaa
     4621 gggaagctag catttagaga ttaaatgtca tccttttggc gttggaaagt tgtttacctt
     4681 gtgctctctg tgtctccatg ttggcaccct tccagttcac atgtgatggc cttccttgta
     4741 ctgctgcatc attaactaag tgactgagct ggccttccat tggccagggg agggctctca
     4801 ctccagacac ttcctctgat tggtgggtgg accaatggca ggtgaaaacc tttttttgat
     4861 tggctgaggg aagggtatca aatctgaatt tgcatttcac ttgcttaaag gggagggggg
     4921 ggaagcccag cagctttcta aaatctgttt aggggtgtgc gtatgctcct gtgtctgtgc
     4981 ctgcttctga ctgaccggtt gaagcctctt cctgtgcctt tttaacttca tgcactgtaa
     5041 gggagaggag ctgagggctc cccaaacttt tgtttcggag gggcaggggt tgggaagatg
     5101 ggcacgcaga gggttgacca aactggaaga aaatactcgt tctttagtgg gaattttccg
     5161 atcagccaca cctcagcgtt gcggcaaaat aaatcttggc tcccctggaa acgcatgggc
     5221 aaggtagggc agagctgcta ctgctgctgt tgccgccacc ctgggcttcc tgctgactcc
     5281 gggctcctcc ccggggacag gagatttgca ttgacgtccc aggctgtcca gagctgagcc
     5341 cattatggga aggacctgcc ttctggaagc tgctgctccc cggtgcttgg aaaggtacca
     5401 catccgtctg gttcacggcg gttatttcat ttattcctca cctcaaccct gcgaggagag
     5461 tcccatggcc ggttcaccca agacaatggg gattttttgt agctgaaatt gatggactaa
     5521 caaacttcag ttttcctggt ctccttcctc tcgaaacagg aggcagagga gcttttgcat
     5581 caggaaaaca ccatggaaac gccatgagca ttggtggtgg cggagtgagg gttaaacagt
     5641 gagccttcct gggatccttt tgatgccagt gtgtcgggag cctggagatg gagcgctcag
     5701 ccgagtggcc aggacgttct gtcaacatga aagcagcaaa aacagtttgt cggggctcag
     5761 cgctgacccc gggctggtgt cattttcagg aagggcttgg cacaagaaag accaccgcca
     5821 ggcacgggat tgggggtgac gtcggataac tcagtaggcc cctatagacc cttgaatttt
     5881 agaatctgaa aagaaaatca gctgtttgtc ttttattaga tgagcttggc aaacaggatc
     5941 acttcttgaa ctcctctcac tggtccccaa caagagacat cttcccaggt tcagaaaacc
     6001 ctttgggatt tctcggttgt ggcttattgc cttggatgga gggcaggtcc cttctagggg
     6061 gcaggggtgg gcctggcagt cctagtgccc gttatgggga tatggagtcg taggtttcct
     6121 ctgctggcat cacgtgaaga cggtggatcc acatcacagg ccttgagctg aagaccagct
     6181 cttgggcagc ccacttcagc ctctcctttc cttattatct caaatcaaag tcttatcttc
     6241 tccccttcat cttcctcatt tctttcttag gcgcagtagt gggcctgaag tccttgacct
     6301 ttgcgtctgt gtgtgtgtca tcatggcggc tcagggttct agacttttct tgaatctgca
     6361 gcattgcgct ttgtgcgcgt gacgcccccc cccccccccg ctccgccccg cccacccggc
     6421 cccgccccac caggccttct tcggagcaag agagaacatg ggcctccatc gccactgaac
     6481 ctcagccaag ccgtcatccc cagcatctgg cctcccttct ctcctccccc gctttcggcc
     6541 agtgtctggg gtggaggagc aaacaacttg tgggaggaga tggagggaca gcctggcctg
     6601 gagctctctg cctcctttcc tcgtgtgcca tttttcagcc tcacgcttcc tgtggatgga
     6661 tgatgccagc actgacattt gtcgccgagc gcctcctctc cccaaggact tccccgcgtg
     6721 actcttttgg ggtctggaaa gagtggctct ggggccttgg gagccagagg ggacaggggg
     6781 acctggccca ggtcacagca gactgtgaga cgggcgaggg gtgggagctg gccgaaccca
     6841 cccaagcgca aaggcagccc cggccccttt gcgtcatgtc tttttcagcc tgaggagaga
     6901 gcaacttgac ctaaaaaaat tgtatatatg tgggtgttgg atcctttgtg tctctttgtc
     6961 cagaagctgt gcatgtgatg agagcccagg tctctgtact gtacagagaa ctgttgtcct
     7021 tcaggtttgt tttcagaaag atgtgatgga tgggccgtcc ttgatgagac cgcgtgcccg
     7081 ctgggactgg ccttcctcca ggatgctggg cccggcgtgg tgtttcttct gtcagtggac
     7141 gagaactcag aggagttcag ctccatgagt aggtgacaaa ctcctggaga ctcagctgac
     7201 gatggtgccg gtgtgcagaa gacagttgtc atcctgtggg ataagcgtgt gcccgtttgc
     7261 atttatttgg aacaaaaaaa ggagctgcct ggcagcctgg ctctctgcaa ggtgctgttg
     7321 agcccctggt ttgtgtggtt ctgtgaccac aagtgctgat ggatgtggcg ccatcccagt
     7381 cttgtcggtg aaccatcacc agcctgctta ttggaaacca ggcgcagcaa ggaagctagg
     7441 attcaacgcc ctccttccct gcctcccagc ccgcctccaa aagaatttaa tctgctggac
     7501 aacaaacaat actgttataa aactttgaaa acaagagggc gcggcctccc tgacaaggag
     7561 aagggcatgc cgggtaatgg gcgagggagc ctgccaggcc cgagatggag ccaggcaaga
     7621 gcccagttgg ctgggcacct gggtgcccgc ccctgcccag cccaccagcc gtgccatccc
     7681 cagtccagag gagaaggaac cgaaacaaaa gtgggggcag cggagctctt gaaaagggga
     7741 agttgtcctg agactggcag acagaggtcc tgataacaga atgaggctgg catagccgtg
     7801 aaggtacagc caccagcctg gccagctgca ggggaagcag gagagaaagg tgctccaagc
     7861 tggctttgga ctccagacct accctctgtc tgcccagcct cccacccccc acctagggaa
     7921 gtggaaccag gtcatgggca tgacccggtc catgtgctct gccaggagcc ctgaaaccag
     7981 cattcccagc ggcaggaaga tggatgatct gggctccact tccggcgctc ctcccccact
     8041 ctggctggaa cttgcgtcag tcatatcaag gaggccctcg ggttgggtgc cagggagagc
     8101 aagctgcttc cagccgcatg aaatcacctg gctacttgca actaggggac aaaatcagca
     8161 tctggtttca gagaaccgag agtattttag aactcgagag ttggagccca aactcagccg
     8221 tgcagtggag accacagagg caccagggtg ctggagaaca aagcaagtat cgaagcaccg
     8281 gctccttgca gaaccaggcg tgctctcatc tccacccaag tttaatgtgt tgtacagtca
     8341 gtaataccca cccccatcta tgcagaaata ttgcctagga ctaccctcac cctcaatctt
     8401 cctcataatt aagttcaaga acagaatgag acggtagtcc agctacagaa caggaggcag
     8461 tgggcagaag agtaggagca cagactttgg agtcagacct ggaatcgaca ccattcacta
     8521 gtcatgggac tgtggacaag tttttgaacc acactgagga tcagtttctt ctcctgccaa
     8581 aaagggaata ctacctactc cgcaagactg ttgtgagaat tcaagagcac agcttggtgt
     8641 tcaaatttta tttccttctc ttccctagag cagcacatga tgttatgtcc aggaggcgta
     8701 aaaagtagaa gggtttatct agagtcctga agaattggta gggaaccgga gagatgcaga
     8761 ttcttctttc tcctggttat ggtatcagag gaaatacaga catattttct tagcttcaaa
     8821 caaccaaaaa agatggtgca agtaggagat gagaaatcta atttgaacac catttgcaaa
     8881 cctaattttc aggcagaatt tgaaaacaac acaaaacaaa actccattct tttattagag
     8941 gattatctac ttagtacaat tataagacac taatcttttt gtgtcacagt agagaataaa
     9001 taagattggc aattaacggg gtcatatttg aatgtcctga ctgctcacgt atggctggga
     9061 aggcggagcc cgtgatctac gtgactagga cacatggaag tgttgccctg gctcaggtga
     9121 aacccacctt tgtgtagtgt ctagagcctc acaggcagaa agggtgcttg tttcctgatg
     9181 acgtgagaaa atatgggaaa atgctttgca cactgtgaaa tagtttacaa agcagggcaa
     9241 tactaatgta catattaacc cagtttagta acagctttgg ctattttatt tcgtcatata
     9301 tataataatc tgtagggact ggttatggaa ttaagtaact tagaattcat gagttttgta
     9361 ttgcgattgt ctgtgtaaat taccagcttt gactttcgtg ttctttgagc atcactttgt
     9421 aactcttctc tgtgcctttc taatggatcc atatatcatg tcccgtcaca agtggaactg
     9481 caagaagaca cctctgctcg gggcagaggc tgggtcttcc gatcgcatct cccttctttc
     9541 ttcagtgaga tcctcttctt ctggaagctg gtttcacatg gtggcttaga tttttccatc
     9601 tttgtatcta gcaccatttg aaatcagtgt tttaggagta agaattgcag cacagcaaaa
     9661 ggccaaccgc agaggagctg ctgctcgtgg gatcagcttc cctccttctg ccacctgagc
     9721 cggttcaaga aaaggaagaa cttgagaatc aaagtacact cttgagtgtg ttgggttgtg
     9781 gaaggggaca gtgcagggat ggggtcgtgt tcaatagaaa ctcagaggct tgagcagagc
     9841 cagaggttgt gattgtcttt ctgttgacag ggagcggcaa cccctagcag tagcctgttg
     9901 gtaaggcctt tgagcacacg cttgggcaat gccgggttgg gtacttgatt gcaataggca
     9961 aggggagggg tgtggaccag aaggactatc tcatcacatc agcactgtcc acctgctcct
    10021 agatgccgtg aaacattcag ctgcagttgc cgagcagctg aaatcagact tgccacctgc
    10081 actgtcaagg tgccggaccc caccgagcac cactggaccc atctcttaca caggctgacc
    10141 gatttctcct ggtgttcaga gtctgttttt gtctagcacc atttgaaatc ggttatgatg
    10201 tagggggaaa agcagcagcc tcgaggcctc atgccaagtc tggtcagcaa cagcctgggg
    10261 cttcctggaa gatggatgcg cagagagagg gggaggaagg ttatgctttt tcctgctagc
    10321 ttctttaact acatctacaa tactttatgc acgggtaata gatcagttaa tggatttttc
    10381 agaagcaaat cactaaaatt tatctgatgt cctcggtttg ccgaaatgtg gtagtgatgt
    10441 aaactataaa ttggttgctg ttgaattatc tttcagtcat gcatcctgac cttaataaat
    10501 gctttactgt acacaatt
//
LOCUS       XR_004351817           10586 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X12, misc_RNA.
ACCESSION   XR_004351817
VERSION     XR_004351817.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10586
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10586
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..10586
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X12"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ctggaaggga ggaggctggc agcgaaagga gggagcagac gaccccgaat agcaaaggag
       61 acggaagcta agcacaccca gagctgcttt tagctggtaa tggacaagcc tcaaggttct
      121 tcccatgtga cttcactgcc tggactcttt agttgtgacg ccagagagtg aaggaaatgt
      181 ggttggtccc acctttgtcc ctggagttgt caagcatgaa aatggggagg agttcatcag
      241 ggaaggacag agttcggagg aagtctccta agaggaggat gtcactagct tgcctagcac
      301 agtggttggg agtctggtac tggctgcata ccctgcacag gctcctcagc ccctaacctg
      361 taaagtggag gtgatggcca tcccagcttc caagtgccgt ggtgaggacc gactgagctg
      421 tgatacacgc atggggccgg caccaggcct gatgcgtggt gagtgattag tggatattga
      481 ggtccacgtt catgaggcgg atgctgtttg gacagtgaga aaatgagttc cggcttttaa
      541 agagcagact ttggaaacat cagagatgct aatttgggaa tgcttgtagg gtcctctcac
      601 agaacctgta cgtcttgagg tgatggcctg tgtcttatac ttcttctgcg cggaatgtgg
      661 ccttagcatc tagtaggtac ttaatcagtg atttacctcc tggggttacc gagtgccctt
      721 tgtctgctcc tcccttccag gcggtaaaca gaaacacctt ctccctgtgg acctgaacct
      781 gtcagtgctg cccgagacca gaccgctgcc tgatttatct agaacaccca ctcgagccct
      841 tgatactcgt gtggagtttg agatcagtcc cctgtacaga gctccctgtc ttgagagaaa
      901 tgacttcttt cctgatgaaa gatccagccc gtgttcagga ggccctaatg aggaaatggg
      961 aggacagaga ggctgcacta agcctgcgct gttggctgat gcccgccgaa ctggagttcg
     1021 tggcaattcc agagtgcttg cattccaaac ccagggcgag ggctgggtaa aagtccagct
     1081 catccccttt aaagaaaaaa attcttcctc tctgacattt cgaggttttg acccagatca
     1141 gtcagaggcc acggagagct cgcaatgtct ggagagtgtg tttagttccc gaggcctgga
     1201 gctgcagaga agccggagcg agccagtgac ctgctgggct tgagttgaag ccctgccttt
     1261 tcaagtgtgc cctggcccag cctccccaga cctcacaggg tggacggaag gagccagcac
     1321 cttcccctca ctccaaagtt atctttaccc cctgaaatca aacatcgcat gcagcaccct
     1381 gtaaaactgc ttccttgtag gcttgagcgt gcttgctgag taaacatcct cccatgtttt
     1441 tggaactgaa tccatttctg cttcctggtc atcccatgcg ggttctttct gttctgggtg
     1501 ccatgcagaa tcaggttaat agaaggcaga cctagcgttg ggcaggggca cctaaaatga
     1561 cagtttcaac cttagtaaat tgtaaggaga gtaacagcgt cgtgggaaga aagagaaaag
     1621 acttagacga aaaatgaaat gaaacagagc ctcccaaaca tagtgctgcc atcatgcttt
     1681 gcaagtcaga gttggttcct gccgagccct gagacgggga ccttcctttg catgggctca
     1741 agctcagttg tgcggtggct gaaccacagt cagcctccgt ctgtaggttg tgtggctgcg
     1801 tctggccctc ctgaccctaa cttgctcttg ccccgtctct cgtgacttat ttgcctcttc
     1861 tctctcactt ccacccaccc gtgacatctc catcgccatg gcattgagca gccacgtcat
     1921 ccaccatgtt cacggggtga tgggccaact ctgtgctgag ccctacttcc ttctcgttct
     1981 ccctcctgaa gcaggaggct ccctggcaga gctcaaagcc ctttgtttat ttgatcctgg
     2041 gcgtcttgga taaatcagga atgtcctgac atgaacttag gcatgttttt cttccatgga
     2101 aaaggaaact acggcaaatg gtatttaagt aggcagagga ccattccggg ggacttgcgt
     2161 tggtgccatc aaggccacat tcctttggtc atcagaccag taggtgactt ctttattggc
     2221 atgctctacc ctggagccca gaaggtgtga atttgaagca ctttctcccc tgctgagagc
     2281 ttggcacaga tgctctggac ttcttttaaa gccatggagt accatggttg tcttccaggt
     2341 ggtcttcttt ctgctgggtg aaaccttggc ccagagtagt tgcttgaaga aggctgcttg
     2401 ggagttgggg tacaggataa ggttgctgcc tggcctctca ttctccagcc gtcttgaagt
     2461 tgcaatgatc tcgatgtgtg atctactttg agtcagctgc cccaggacct gaacacttcc
     2521 gatcagggct aggctcttgt ggtacaaccg gtcgccagaa acctttgcgg gtctgctttc
     2581 tttggatgtg gcgttgtggg aacccaagaa ttcctgagtc tgtctaggta tatggagtcc
     2641 agtgagttta gcatctgagt tgttctggaa ctatttctgg gtctgggggc aggaaaatgt
     2701 tgggagctat gtgctttgct gcagtggaga cctgtcagta accaaaaaac aagcccagtc
     2761 agtctccaga gcattggtgg gaaccccccc cccccccagc tccctgtgag agtttccagg
     2821 tgtgaatgcc catgtattac catggcaggg gcagtgcggg gtgggctggc gggtgctcat
     2881 ctcatttggc cacctgccct ggagagaaga agccagtcgt tggccactgc aggtccaggc
     2941 ttggctgccg ctctgttttg ctgcttttca tgttgtcaga ggatcttctt gggaacaaat
     3001 gactcagcaa cctgaatctc tgggactgag tagcctaagt gccttttgag aagtgattgg
     3061 acctatctgc acaggcccta aaattctgag ccccggaaga gtggagatcc ggactggttt
     3121 tactatagat tcttcaggcc gccgctcaat ttggtttctc caattcctgc cccagtagaa
     3181 ggagctcact catggggtaa gcaggcaatg ttttaattat gctttttgtc cttagaaaat
     3241 tccaggaaga aaaaagatcc tggtctgtgg ccaaaaaagc agaaaacaac gaaaatcagc
     3301 gacggctgta attctggact tgtctgtggc agaaagagtt aataggacgg tggtctcagg
     3361 gtgggggccg ttatattctc gggtccagga gaagctcacg tggttcaaga aaagatgacg
     3421 ccacatttag tgtgggacag ccctgtctgg gttctgggcg ctgtcactca aagagttaag
     3481 ctagtcttat ggctggggag ccctcaggga aggcctgagc ctgcagggac caggccctct
     3541 acgccccaga gcagtgaggt ctggggtaaa agaggggctg agaagtgtgg ccaggaaagc
     3601 cgagtgtagg cccaactttt ttttttgcct tgtttgacca gccttggcac tgccctctgg
     3661 ctctccaggg gaaaagctgc agttctgctc ttgcaacaca aggagcagac tggagaattt
     3721 agatctgcgt cacagagctc agagagagag agaggagaga ggggagagag agagggagag
     3781 agagagagag cgcgagcgct ccgtcgatag gtctgctagc aacagccgtg ctgcagcaga
     3841 gagagagaga gaaatcaaga aacaagtcat agcaacaccg ggcaccaggt tctgccagct
     3901 cacttgccaa gcgttcagaa atctgtcagg ggccggaggc ctctgggtag cctaggctaa
     3961 ggagatgaca cgcaaggtgg cacgggcggt tcccgcgggg aggaggcgac gatgggtggt
     4021 ccgatgggct tcaggacttg atggcgtaac ccccgtcttc ccccacgtac gtatttgctg
     4081 ggatcggggg cgatgtctct gcgtatgtgg gtgctctgtc tttctcacct tctttcttgc
     4141 tttttgctat tttttttttt ttttttctga gggaggggtt ttttccactt taatttcttt
     4201 tcccttagtg tcagctgctc aagcctgacc gaggtagagg aaagaggagc aagccgtccc
     4261 tggcgtccca cctgacctcc cagcctctac ccccatttcc ttctatcggg cagacagaca
     4321 gacacacagg ctggttttcc aagttgtttg ggtatcagtg tctgtccgtc catatggttc
     4381 tcaggtagaa ggtacggagt gaggaggaga agtgttgaga ggaaggcgag aggggcagct
     4441 ttctaggggt tgccttgttg aaacattcgg ccctgggaat ccggggctgt tggggagcag
     4501 gtgggcagga tggggtgtgg gctgcgagaa gtggggtaaa gctggtaggt ttgtcactgc
     4561 gtagttgggg aaagtgggga atggtgacgc agtcactgtt ggatcttgtt aggggctctg
     4621 gggggacagg tagtgagggt cccaggatct gtagggccag ctgagagggg ttgaggatga
     4681 gctgagaagg gaagctagca tttagagatt aaatgtcatc cttttggcgt tggaaagttg
     4741 tttaccttgt gctctctgtg tctccatgtt ggcacccttc cagttcacat gtgatggcct
     4801 tccttgtact gctgcatcat taactaagtg actgagctgg ccttccattg gccaggggag
     4861 ggctctcact ccagacactt cctctgattg gtgggtggac caatggcagg tgaaaacctt
     4921 tttttgattg gctgagggaa gggtatcaaa tctgaatttg catttcactt gcttaaaggg
     4981 gagggggggg aagcccagca gctttctaaa atctgtttag gggtgtgcgt atgctcctgt
     5041 gtctgtgcct gcttctgact gaccggttga agcctcttcc tgtgcctttt taacttcatg
     5101 cactgtaagg gagaggagct gagggctccc caaacttttg tttcggaggg gcaggggttg
     5161 ggaagatggg cacgcagagg gttgaccaaa ctggaagaaa atactcgttc tttagtggga
     5221 attttccgat cagccacacc tcagcgttgc ggcaaaataa atcttggctc ccctggaaac
     5281 gcatgggcaa ggtagggcag agctgctact gctgctgttg ccgccaccct gggcttcctg
     5341 ctgactccgg gctcctcccc ggggacagga gatttgcatt gacgtcccag gctgtccaga
     5401 gctgagccca ttatgggaag gacctgcctt ctggaagctg ctgctccccg gtgcttggaa
     5461 aggtaccaca tccgtctggt tcacggcggt tatttcattt attcctcacc tcaaccctgc
     5521 gaggagagtc ccatggccgg ttcacccaag acaatgggga ttttttgtag ctgaaattga
     5581 tggactaaca aacttcagtt ttcctggtct ccttcctctc gaaacaggag gcagaggagc
     5641 ttttgcatca ggaaaacacc atggaaacgc catgagcatt ggtggtggcg gagtgagggt
     5701 taaacagtga gccttcctgg gatccttttg atgccagtgt gtcgggagcc tggagatgga
     5761 gcgctcagcc gagtggccag gacgttctgt caacatgaaa gcagcaaaaa cagtttgtcg
     5821 gggctcagcg ctgaccccgg gctggtgtca ttttcaggaa gggcttggca caagaaagac
     5881 caccgccagg cacgggattg ggggtgacgt cggataactc agtaggcccc tatagaccct
     5941 tgaattttag aatctgaaaa gaaaatcagc tgtttgtctt ttattagatg agcttggcaa
     6001 acaggatcac ttcttgaact cctctcactg gtccccaaca agagacatct tcccaggttc
     6061 agaaaaccct ttgggatttc tcggttgtgg cttattgcct tggatggagg gcaggtccct
     6121 tctagggggc aggggtgggc ctggcagtcc tagtgcccgt tatggggata tggagtcgta
     6181 ggtttcctct gctggcatca cgtgaagacg gtggatccac atcacaggcc ttgagctgaa
     6241 gaccagctct tgggcagccc acttcagcct ctcctttcct tattatctca aatcaaagtc
     6301 ttatcttctc cccttcatct tcctcatttc tttcttaggc gcagtagtgg gcctgaagtc
     6361 cttgaccttt gcgtctgtgt gtgtgtcatc atggcggctc agggttctag acttttcttg
     6421 aatctgcagc attgcgcttt gtgcgcgtga cgcccccccc cccccccgct ccgccccgcc
     6481 cacccggccc cgccccacca ggccttcttc ggagcaagag agaacatggg cctccatcgc
     6541 cactgaacct cagccaagcc gtcatcccca gcatctggcc tcccttctct cctcccccgc
     6601 tttcggccag tgtctggggt ggaggagcaa acaacttgtg ggaggagatg gagggacagc
     6661 ctggcctgga gctctctgcc tcctttcctc gtgtgccatt tttcagcctc acgcttcctg
     6721 tggatggatg atgccagcac tgacatttgt cgccgagcgc ctcctctccc caaggacttc
     6781 cccgcgtgac tcttttgggg tctggaaaga gtggctctgg ggccttggga gccagagggg
     6841 acagggggac ctggcccagg tcacagcaga ctgtgagacg ggcgaggggt gggagctggc
     6901 cgaacccacc caagcgcaaa ggcagccccg gcccctttgc gtcatgtctt tttcagcctg
     6961 aggagagagc aacttgacct aaaaaaattg tatatatgtg ggtgttggat cctttgtgtc
     7021 tctttgtcca gaagctgtgc atgtgatgag agcccaggtc tctgtactgt acagagaact
     7081 gttgtccttc aggtttgttt tcagaaagat gtgatggatg ggccgtcctt gatgagaccg
     7141 cgtgcccgct gggactggcc ttcctccagg atgctgggcc cggcgtggtg tttcttctgt
     7201 cagtggacga gaactcagag gagttcagct ccatgagtag gtgacaaact cctggagact
     7261 cagctgacga tggtgccggt gtgcagaaga cagttgtcat cctgtgggat aagcgtgtgc
     7321 ccgtttgcat ttatttggaa caaaaaaagg agctgcctgg cagcctggct ctctgcaagg
     7381 tgctgttgag cccctggttt gtgtggttct gtgaccacaa gtgctgatgg atgtggcgcc
     7441 atcccagtct tgtcggtgaa ccatcaccag cctgcttatt ggaaaccagg cgcagcaagg
     7501 aagctaggat tcaacgccct ccttccctgc ctcccagccc gcctccaaaa gaatttaatc
     7561 tgctggacaa caaacaatac tgttataaaa ctttgaaaac aagagggcgc ggcctccctg
     7621 acaaggagaa gggcatgccg ggtaatgggc gagggagcct gccaggcccg agatggagcc
     7681 aggcaagagc ccagttggct gggcacctgg gtgcccgccc ctgcccagcc caccagccgt
     7741 gccatcccca gtccagagga gaaggaaccg aaacaaaagt gggggcagcg gagctcttga
     7801 aaaggggaag ttgtcctgag actggcagac agaggtcctg ataacagaat gaggctggca
     7861 tagccgtgaa ggtacagcca ccagcctggc cagctgcagg ggaagcagga gagaaaggtg
     7921 ctccaagctg gctttggact ccagacctac cctctgtctg cccagcctcc caccccccac
     7981 ctagggaagt ggaaccaggt catgggcatg acccggtcca tgtgctctgc caggagccct
     8041 gaaaccagca ttcccagcgg caggaagatg gatgatctgg gctccacttc cggcgctcct
     8101 cccccactct ggctggaact tgcgtcagtc atatcaagga ggccctcggg ttgggtgcca
     8161 gggagagcaa gctgcttcca gccgcatgaa atcacctggc tacttgcaac taggggacaa
     8221 aatcagcatc tggtttcaga gaaccgagag tattttagaa ctcgagagtt ggagcccaaa
     8281 ctcagccgtg cagtggagac cacagaggca ccagggtgct ggagaacaaa gcaagtatcg
     8341 aagcaccggc tccttgcaga accaggcgtg ctctcatctc cacccaagtt taatgtgttg
     8401 tacagtcagt aatacccacc cccatctatg cagaaatatt gcctaggact accctcaccc
     8461 tcaatcttcc tcataattaa gttcaagaac agaatgagac ggtagtccag ctacagaaca
     8521 ggaggcagtg ggcagaagag taggagcaca gactttggag tcagacctgg aatcgacacc
     8581 attcactagt catgggactg tggacaagtt tttgaaccac actgaggatc agtttcttct
     8641 cctgccaaaa agggaatact acctactccg caagactgtt gtgagaattc aagagcacag
     8701 cttggtgttc aaattttatt tccttctctt ccctagagca gcacatgatg ttatgtccag
     8761 gaggcgtaaa aagtagaagg gtttatctag agtcctgaag aattggtagg gaaccggaga
     8821 gatgcagatt cttctttctc ctggttatgg tatcagagga aatacagaca tattttctta
     8881 gcttcaaaca accaaaaaag atggtgcaag taggagatga gaaatctaat ttgaacacca
     8941 tttgcaaacc taattttcag gcagaatttg aaaacaacac aaaacaaaac tccattcttt
     9001 tattagagga ttatctactt agtacaatta taagacacta atctttttgt gtcacagtag
     9061 agaataaata agattggcaa ttaacggggt catatttgaa tgtcctgact gctcacgtat
     9121 ggctgggaag gcggagcccg tgatctacgt gactaggaca catggaagtg ttgccctggc
     9181 tcaggtgaaa cccacctttg tgtagtgtct agagcctcac aggcagaaag ggtgcttgtt
     9241 tcctgatgac gtgagaaaat atgggaaaat gctttgcaca ctgtgaaata gtttacaaag
     9301 cagggcaata ctaatgtaca tattaaccca gtttagtaac agctttggct attttatttc
     9361 gtcatatata taataatctg tagggactgg ttatggaatt aagtaactta gaattcatga
     9421 gttttgtatt gcgattgtct gtgtaaatta ccagctttga ctttcgtgtt ctttgagcat
     9481 cactttgtaa ctcttctctg tgcctttcta atggatccat atatcatgtc ccgtcacaag
     9541 tggaactgca agaagacacc tctgctcggg gcagaggctg ggtcttccga tcgcatctcc
     9601 cttctttctt cagtgagatc ctcttcttct ggaagctggt ttcacatggt ggcttagatt
     9661 tttccatctt tgtatctagc accatttgaa atcagtgttt taggagtaag aattgcagca
     9721 cagcaaaagg ccaaccgcag aggagctgct gctcgtggga tcagcttccc tccttctgcc
     9781 acctgagccg gttcaagaaa aggaagaact tgagaatcaa agtacactct tgagtgtgtt
     9841 gggttgtgga aggggacagt gcagggatgg ggtcgtgttc aatagaaact cagaggcttg
     9901 agcagagcca gaggttgtga ttgtctttct gttgacaggg agcggcaacc cctagcagta
     9961 gcctgttggt aaggcctttg agcacacgct tgggcaatgc cgggttgggt acttgattgc
    10021 aataggcaag gggaggggtg tggaccagaa ggactatctc atcacatcag cactgtccac
    10081 ctgctcctag atgccgtgaa acattcagct gcagttgccg agcagctgaa atcagacttg
    10141 ccacctgcac tgtcaaggtg ccggacccca ccgagcacca ctggacccat ctcttacaca
    10201 ggctgaccga tttctcctgg tgttcagagt ctgtttttgt ctagcaccat ttgaaatcgg
    10261 ttatgatgta gggggaaaag cagcagcctc gaggcctcat gccaagtctg gtcagcaaca
    10321 gcctggggct tcctggaaga tggatgcgca gagagagggg gaggaaggtt atgctttttc
    10381 ctgctagctt ctttaactac atctacaata ctttatgcac gggtaataga tcagttaatg
    10441 gatttttcag aagcaaatca ctaaaattta tctgatgtcc tcggtttgcc gaaatgtggt
    10501 agtgatgtaa actataaatt ggttgctgtt gaattatctt tcagtcatgc atcctgacct
    10561 taataaatgc tttactgtac acaatt
//
LOCUS       XR_004351818           16717 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X13, misc_RNA.
ACCESSION   XR_004351818
VERSION     XR_004351818.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16717
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16717
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16717
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X13"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccact gtcagctgct caagcctgac cgaggtagag gaaagaggag
    10381 caagccgtcc ctggcgtccc acctgacctc ccagcctcta cccccatttc cttctatcgg
    10441 gcagacagac agacacacag gctggttttc caagttgttt gggtatcagt gtctgtccgt
    10501 ccatatggtt ctcaggtaga aggtacggag tgaggaggag aagtgttgag aggaaggcga
    10561 gaggggcagc tttctagggg ttgccttgtt gaaacattcg gccctgggaa tccggggctg
    10621 ttggggagca ggtgggcagg atggggtgtg ggctgcgaga agtggggtaa agctggtagg
    10681 tttgtcactg cgtagttggg gaaagtgggg aatggtgacg cagtcactgt tggatcttgt
    10741 taggggctct ggggggacag gtagtgaggg tcccaggatc tgtagggcca gctgagaggg
    10801 gttgaggatg agctgagaag ggaagctagc atttagagat taaatgtcat ccttttggcg
    10861 ttggaaagtt gtttaccttg tgctctctgt gtctccatgt tggcaccctt ccagttcaca
    10921 tgtgatggcc ttccttgtac tgctgcatca ttaactaagt gactgagctg gccttccatt
    10981 ggccagggga gggctctcac tccagacact tcctctgatt ggtgggtgga ccaatggcag
    11041 gtgaaaacct ttttttgatt ggctgaggga agggtatcaa atctgaattt gcatttcact
    11101 tgcttaaagg ggaggggggg gaagcccagc agctttctaa aatctgttta ggggtgtgcg
    11161 tatgctcctg tgtctgtgcc tgcttctgac tgaccggttg aagcctcttc ctgtgccttt
    11221 ttaacttcat gcactgtaag ggagaggagc tgagggctcc ccaaactttt gtttcggagg
    11281 ggcaggggtt gggaagatgg gcacgcagag ggttgaccaa actggaagaa aatactcgtt
    11341 ctttagtggg aattttccga tcagccacac ctcagcgttg cggcaaaata aatcttggct
    11401 cccctggaaa cgcatgggca aggtagggca gagctgctac tgctgctgtt gccgccaccc
    11461 tgggcttcct gctgactccg ggctcctccc cggggacagg agatttgcat tgacgtccca
    11521 ggctgtccag agctgagccc attatgggaa ggacctgcct tctggaagct gctgctcccc
    11581 ggtgcttgga aaggtaccac atccgtctgg ttcacggcgg ttatttcatt tattcctcac
    11641 ctcaaccctg cgaggagagt cccatggccg gttcacccaa gacaatgggg attttttgta
    11701 gctgaaattg atggactaac aaacttcagt tttcctggtc tccttcctct cgaaacagga
    11761 ggcagaggag cttttgcatc aggaaaacac catggaaacg ccatgagcat tggtggtggc
    11821 ggagtgaggg ttaaacagtg agccttcctg ggatcctttt gatgccagtg tgtcgggagc
    11881 ctggagatgg agcgctcagc cgagtggcca ggacgttctg tcaacatgaa agcagcaaaa
    11941 acagtttgtc ggggctcagc gctgaccccg ggctggtgtc attttcagga agggcttggc
    12001 acaagaaaga ccaccgccag gcacgggatt gggggtgacg tcggataact cagtaggccc
    12061 ctatagaccc ttgaatttta gaatctgaaa agaaaatcag ctgtttgtct tttattagat
    12121 gagcttggca aacaggatca cttcttgaac tcctctcact ggtccccaac aagagacatc
    12181 ttcccaggtt cagaaaaccc tttgggattt ctcggttgtg gcttattgcc ttggatggag
    12241 ggcaggtccc ttctaggggg caggggtggg cctggcagtc ctagtgcccg ttatggggat
    12301 atggagtcgt aggtttcctc tgctggcatc acgtgaagac ggtggatcca catcacaggc
    12361 cttgagctga agaccagctc ttgggcagcc cacttcagcc tctcctttcc ttattatctc
    12421 aaatcaaagt cttatcttct ccccttcatc ttcctcattt ctttcttagg cgcagtagtg
    12481 ggcctgaagt ccttgacctt tgcgtctgtg tgtgtgtcat catggcggct cagggttcta
    12541 gacttttctt gaatctgcag cattgcgctt tgtgcgcgtg acgccccccc ccccccccgc
    12601 tccgccccgc ccacccggcc ccgccccacc aggccttctt cggagcaaga gagaacatgg
    12661 gcctccatcg ccactgaacc tcagccaagc cgtcatcccc agcatctggc ctcccttctc
    12721 tcctcccccg ctttcggcca gtgtctgggg tggaggagca aacaacttgt gggaggagat
    12781 ggagggacag cctggcctgg agctctctgc ctcctttcct cgtgtgccat ttttcagcct
    12841 cacgcttcct gtggatggat gatgccagca ctgacatttg tcgccgagcg cctcctctcc
    12901 ccaaggactt ccccgcgtga ctcttttggg gtctggaaag agtggctctg gggccttggg
    12961 agccagaggg gacaggggga cctggcccag gtcacagcag actgtgagac gggcgagggg
    13021 tgggagctgg ccgaacccac ccaagcgcaa aggcagcccc ggcccctttg cgtcatgtct
    13081 ttttcagcct gaggagagag caacttgacc taaaaaaatt gtatatatgt gggtgttgga
    13141 tcctttgtgt ctctttgtcc agaagctgtg catgtgatga gagcccaggt ctctgtactg
    13201 tacagagaac tgttgtcctt caggtttgtt ttcagaaaga tgtgatggat gggccgtcct
    13261 tgatgagacc gcgtgcccgc tgggactggc cttcctccag gatgctgggc ccggcgtggt
    13321 gtttcttctg tcagtggacg agaactcaga ggagttcagc tccatgagta ggtgacaaac
    13381 tcctggagac tcagctgacg atggtgccgg tgtgcagaag acagttgtca tcctgtggga
    13441 taagcgtgtg cccgtttgca tttatttgga acaaaaaaag gagctgcctg gcagcctggc
    13501 tctctgcaag gtgctgttga gcccctggtt tgtgtggttc tgtgaccaca agtgctgatg
    13561 gatgtggcgc catcccagtc ttgtcggtga accatcacca gcctgcttat tggaaaccag
    13621 gcgcagcaag gaagctagga ttcaacgccc tccttccctg cctcccagcc cgcctccaaa
    13681 agaatttaat ctgctggaca acaaacaata ctgttataaa actttgaaaa caagagggcg
    13741 cggcctccct gacaaggaga agggcatgcc gggtaatggg cgagggagcc tgccaggccc
    13801 gagatggagc caggcaagag cccagttggc tgggcacctg ggtgcccgcc cctgcccagc
    13861 ccaccagccg tgccatcccc agtccagagg agaaggaacc gaaacaaaag tgggggcagc
    13921 ggagctcttg aaaaggggaa gttgtcctga gactggcaga cagaggtcct gataacagaa
    13981 tgaggctggc atagccgtga aggtacagcc accagcctgg ccagctgcag gggaagcagg
    14041 agagaaaggt gctccaagct ggctttggac tccagaccta ccctctgtct gcccagcctc
    14101 ccacccccca cctagggaag tggaaccagg tcatgggcat gacccggtcc atgtgctctg
    14161 ccaggagccc tgaaaccagc attcccagcg gcaggaagat ggatgatctg ggctccactt
    14221 ccggcgctcc tcccccactc tggctggaac ttgcgtcagt catatcaagg aggccctcgg
    14281 gttgggtgcc agggagagca agctgcttcc agccgcatga aatcacctgg ctacttgcaa
    14341 ctaggggaca aaatcagcat ctggtttcag agaaccgaga gtattttaga actcgagagt
    14401 tggagcccaa actcagccgt gcagtggaga ccacagaggc accagggtgc tggagaacaa
    14461 agcaagtatc gaagcaccgg ctccttgcag aaccaggcgt gctctcatct ccacccaagt
    14521 ttaatgtgtt gtacagtcag taatacccac ccccatctat gcagaaatat tgcctaggac
    14581 taccctcacc ctcaatcttc ctcataatta agttcaagaa cagaatgaga cggtagtcca
    14641 gctacagaac aggaggcagt gggcagaaga gtaggagcac agactttgga gtcagacctg
    14701 gaatcgacac cattcactag tcatgggact gtggacaagt ttttgaacca cactgaggat
    14761 cagtttcttc tcctgccaaa aagggaatac tacctactcc gcaagactgt tgtgagaatt
    14821 caagagcaca gcttggtgtt caaattttat ttccttctct tccctagagc agcacatgat
    14881 gttatgtcca ggaggcgtaa aaagtagaag ggtttatcta gagtcctgaa gaattggtag
    14941 ggaaccggag agatgcagat tcttctttct cctggttatg gtatcagagg aaatacagac
    15001 atattttctt agcttcaaac aaccaaaaaa gatggtgcaa gtaggagatg agaaatctaa
    15061 tttgaacacc atttgcaaac ctaattttca ggcagaattt gaaaacaaca caaaacaaaa
    15121 ctccattctt ttattagagg attatctact tagtacaatt ataagacact aatctttttg
    15181 tgtcacagta gagaataaat aagattggca attaacgggg tcatatttga atgtcctgac
    15241 tgctcacgta tggctgggaa ggcggagccc gtgatctacg tgactaggac acatggaagt
    15301 gttgccctgg ctcaggtgaa acccaccttt gtgtagtgtc tagagcctca caggcagaaa
    15361 gggtgcttgt ttcctgatga cgtgagaaaa tatgggaaaa tgctttgcac actgtgaaat
    15421 agtttacaaa gcagggcaat actaatgtac atattaaccc agtttagtaa cagctttggc
    15481 tattttattt cgtcatatat ataataatct gtagggactg gttatggaat taagtaactt
    15541 agaattcatg agttttgtat tgcgattgtc tgtgtaaatt accagctttg actttcgtgt
    15601 tctttgagca tcactttgta actcttctct gtgcctttct aatggatcca tatatcatgt
    15661 cccgtcacaa gtggaactgc aagaagacac ctctgctcgg ggcagaggct gggtcttccg
    15721 atcgcatctc ccttctttct tcagtgagat cctcttcttc tggaagctgg tttcacatgg
    15781 tggcttagat ttttccatct ttgtatctag caccatttga aatcagtgtt ttaggagtaa
    15841 gaattgcagc acagcaaaag gccaaccgca gaggagctgc tgctcgtggg atcagcttcc
    15901 ctccttctgc cacctgagcc ggttcaagaa aaggaagaac ttgagaatca aagtacactc
    15961 ttgagtgtgt tgggttgtgg aaggggacag tgcagggatg gggtcgtgtt caatagaaac
    16021 tcagaggctt gagcagagcc agaggttgtg attgtctttc tgttgacagg gagcggcaac
    16081 ccctagcagt agcctgttgg taaggccttt gagcacacgc ttgggcaatg ccgggttggg
    16141 tacttgattg caataggcaa ggggaggggt gtggaccaga aggactatct catcacatca
    16201 gcactgtcca cctgctccta gatgccgtga aacattcagc tgcagttgcc gagcagctga
    16261 aatcagactt gccacctgca ctgtcaaggt gccggacccc accgagcacc actggaccca
    16321 tctcttacac aggctgaccg atttctcctg gtgttcagag tctgtttttg tctagcacca
    16381 tttgaaatcg gttatgatgt agggggaaaa gcagcagcct cgaggcctca tgccaagtct
    16441 ggtcagcaac agcctggggc ttcctggaag atggatgcgc agagagaggg ggaggaaggt
    16501 tatgcttttt cctgctagct tctttaacta catctacaat actttatgca cgggtaatag
    16561 atcagttaat ggatttttca gaagcaaatc actaaaattt atctgatgtc ctcggtttgc
    16621 cgaaatgtgg tagtgatgta aactataaat tggttgctgt tgaattatct ttcagtcatg
    16681 catcctgacc ttaataaatg ctttactgta cacaatt
//
LOCUS       XR_004351820           16656 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X14, misc_RNA.
ACCESSION   XR_004351820
VERSION     XR_004351820.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16656
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16656
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16656
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X14"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggagtg tcagctgctc aagcctgacc gaggtagagg aaagaggagc
    10321 aagccgtccc tggcgtccca cctgacctcc cagcctctac ccccatttcc ttctatcggg
    10381 cagacagaca gacacacagg ctggttttcc aagttgtttg ggtatcagtg tctgtccgtc
    10441 catatggttc tcaggtagaa ggtacggagt gaggaggaga agtgttgaga ggaaggcgag
    10501 aggggcagct ttctaggggt tgccttgttg aaacattcgg ccctgggaat ccggggctgt
    10561 tggggagcag gtgggcagga tggggtgtgg gctgcgagaa gtggggtaaa gctggtaggt
    10621 ttgtcactgc gtagttgggg aaagtgggga atggtgacgc agtcactgtt ggatcttgtt
    10681 aggggctctg gggggacagg tagtgagggt cccaggatct gtagggccag ctgagagggg
    10741 ttgaggatga gctgagaagg gaagctagca tttagagatt aaatgtcatc cttttggcgt
    10801 tggaaagttg tttaccttgt gctctctgtg tctccatgtt ggcacccttc cagttcacat
    10861 gtgatggcct tccttgtact gctgcatcat taactaagtg actgagctgg ccttccattg
    10921 gccaggggag ggctctcact ccagacactt cctctgattg gtgggtggac caatggcagg
    10981 tgaaaacctt tttttgattg gctgagggaa gggtatcaaa tctgaatttg catttcactt
    11041 gcttaaaggg gagggggggg aagcccagca gctttctaaa atctgtttag gggtgtgcgt
    11101 atgctcctgt gtctgtgcct gcttctgact gaccggttga agcctcttcc tgtgcctttt
    11161 taacttcatg cactgtaagg gagaggagct gagggctccc caaacttttg tttcggaggg
    11221 gcaggggttg ggaagatggg cacgcagagg gttgaccaaa ctggaagaaa atactcgttc
    11281 tttagtggga attttccgat cagccacacc tcagcgttgc ggcaaaataa atcttggctc
    11341 ccctggaaac gcatgggcaa ggtagggcag agctgctact gctgctgttg ccgccaccct
    11401 gggcttcctg ctgactccgg gctcctcccc ggggacagga gatttgcatt gacgtcccag
    11461 gctgtccaga gctgagccca ttatgggaag gacctgcctt ctggaagctg ctgctccccg
    11521 gtgcttggaa aggtaccaca tccgtctggt tcacggcggt tatttcattt attcctcacc
    11581 tcaaccctgc gaggagagtc ccatggccgg ttcacccaag acaatgggga ttttttgtag
    11641 ctgaaattga tggactaaca aacttcagtt ttcctggtct ccttcctctc gaaacaggag
    11701 gcagaggagc ttttgcatca ggaaaacacc atggaaacgc catgagcatt ggtggtggcg
    11761 gagtgagggt taaacagtga gccttcctgg gatccttttg atgccagtgt gtcgggagcc
    11821 tggagatgga gcgctcagcc gagtggccag gacgttctgt caacatgaaa gcagcaaaaa
    11881 cagtttgtcg gggctcagcg ctgaccccgg gctggtgtca ttttcaggaa gggcttggca
    11941 caagaaagac caccgccagg cacgggattg ggggtgacgt cggataactc agtaggcccc
    12001 tatagaccct tgaattttag aatctgaaaa gaaaatcagc tgtttgtctt ttattagatg
    12061 agcttggcaa acaggatcac ttcttgaact cctctcactg gtccccaaca agagacatct
    12121 tcccaggttc agaaaaccct ttgggatttc tcggttgtgg cttattgcct tggatggagg
    12181 gcaggtccct tctagggggc aggggtgggc ctggcagtcc tagtgcccgt tatggggata
    12241 tggagtcgta ggtttcctct gctggcatca cgtgaagacg gtggatccac atcacaggcc
    12301 ttgagctgaa gaccagctct tgggcagccc acttcagcct ctcctttcct tattatctca
    12361 aatcaaagtc ttatcttctc cccttcatct tcctcatttc tttcttaggc gcagtagtgg
    12421 gcctgaagtc cttgaccttt gcgtctgtgt gtgtgtcatc atggcggctc agggttctag
    12481 acttttcttg aatctgcagc attgcgcttt gtgcgcgtga cgcccccccc cccccccgct
    12541 ccgccccgcc cacccggccc cgccccacca ggccttcttc ggagcaagag agaacatggg
    12601 cctccatcgc cactgaacct cagccaagcc gtcatcccca gcatctggcc tcccttctct
    12661 cctcccccgc tttcggccag tgtctggggt ggaggagcaa acaacttgtg ggaggagatg
    12721 gagggacagc ctggcctgga gctctctgcc tcctttcctc gtgtgccatt tttcagcctc
    12781 acgcttcctg tggatggatg atgccagcac tgacatttgt cgccgagcgc ctcctctccc
    12841 caaggacttc cccgcgtgac tcttttgggg tctggaaaga gtggctctgg ggccttggga
    12901 gccagagggg acagggggac ctggcccagg tcacagcaga ctgtgagacg ggcgaggggt
    12961 gggagctggc cgaacccacc caagcgcaaa ggcagccccg gcccctttgc gtcatgtctt
    13021 tttcagcctg aggagagagc aacttgacct aaaaaaattg tatatatgtg ggtgttggat
    13081 cctttgtgtc tctttgtcca gaagctgtgc atgtgatgag agcccaggtc tctgtactgt
    13141 acagagaact gttgtccttc aggtttgttt tcagaaagat gtgatggatg ggccgtcctt
    13201 gatgagaccg cgtgcccgct gggactggcc ttcctccagg atgctgggcc cggcgtggtg
    13261 tttcttctgt cagtggacga gaactcagag gagttcagct ccatgagtag gtgacaaact
    13321 cctggagact cagctgacga tggtgccggt gtgcagaaga cagttgtcat cctgtgggat
    13381 aagcgtgtgc ccgtttgcat ttatttggaa caaaaaaagg agctgcctgg cagcctggct
    13441 ctctgcaagg tgctgttgag cccctggttt gtgtggttct gtgaccacaa gtgctgatgg
    13501 atgtggcgcc atcccagtct tgtcggtgaa ccatcaccag cctgcttatt ggaaaccagg
    13561 cgcagcaagg aagctaggat tcaacgccct ccttccctgc ctcccagccc gcctccaaaa
    13621 gaatttaatc tgctggacaa caaacaatac tgttataaaa ctttgaaaac aagagggcgc
    13681 ggcctccctg acaaggagaa gggcatgccg ggtaatgggc gagggagcct gccaggcccg
    13741 agatggagcc aggcaagagc ccagttggct gggcacctgg gtgcccgccc ctgcccagcc
    13801 caccagccgt gccatcccca gtccagagga gaaggaaccg aaacaaaagt gggggcagcg
    13861 gagctcttga aaaggggaag ttgtcctgag actggcagac agaggtcctg ataacagaat
    13921 gaggctggca tagccgtgaa ggtacagcca ccagcctggc cagctgcagg ggaagcagga
    13981 gagaaaggtg ctccaagctg gctttggact ccagacctac cctctgtctg cccagcctcc
    14041 caccccccac ctagggaagt ggaaccaggt catgggcatg acccggtcca tgtgctctgc
    14101 caggagccct gaaaccagca ttcccagcgg caggaagatg gatgatctgg gctccacttc
    14161 cggcgctcct cccccactct ggctggaact tgcgtcagtc atatcaagga ggccctcggg
    14221 ttgggtgcca gggagagcaa gctgcttcca gccgcatgaa atcacctggc tacttgcaac
    14281 taggggacaa aatcagcatc tggtttcaga gaaccgagag tattttagaa ctcgagagtt
    14341 ggagcccaaa ctcagccgtg cagtggagac cacagaggca ccagggtgct ggagaacaaa
    14401 gcaagtatcg aagcaccggc tccttgcaga accaggcgtg ctctcatctc cacccaagtt
    14461 taatgtgttg tacagtcagt aatacccacc cccatctatg cagaaatatt gcctaggact
    14521 accctcaccc tcaatcttcc tcataattaa gttcaagaac agaatgagac ggtagtccag
    14581 ctacagaaca ggaggcagtg ggcagaagag taggagcaca gactttggag tcagacctgg
    14641 aatcgacacc attcactagt catgggactg tggacaagtt tttgaaccac actgaggatc
    14701 agtttcttct cctgccaaaa agggaatact acctactccg caagactgtt gtgagaattc
    14761 aagagcacag cttggtgttc aaattttatt tccttctctt ccctagagca gcacatgatg
    14821 ttatgtccag gaggcgtaaa aagtagaagg gtttatctag agtcctgaag aattggtagg
    14881 gaaccggaga gatgcagatt cttctttctc ctggttatgg tatcagagga aatacagaca
    14941 tattttctta gcttcaaaca accaaaaaag atggtgcaag taggagatga gaaatctaat
    15001 ttgaacacca tttgcaaacc taattttcag gcagaatttg aaaacaacac aaaacaaaac
    15061 tccattcttt tattagagga ttatctactt agtacaatta taagacacta atctttttgt
    15121 gtcacagtag agaataaata agattggcaa ttaacggggt catatttgaa tgtcctgact
    15181 gctcacgtat ggctgggaag gcggagcccg tgatctacgt gactaggaca catggaagtg
    15241 ttgccctggc tcaggtgaaa cccacctttg tgtagtgtct agagcctcac aggcagaaag
    15301 ggtgcttgtt tcctgatgac gtgagaaaat atgggaaaat gctttgcaca ctgtgaaata
    15361 gtttacaaag cagggcaata ctaatgtaca tattaaccca gtttagtaac agctttggct
    15421 attttatttc gtcatatata taataatctg tagggactgg ttatggaatt aagtaactta
    15481 gaattcatga gttttgtatt gcgattgtct gtgtaaatta ccagctttga ctttcgtgtt
    15541 ctttgagcat cactttgtaa ctcttctctg tgcctttcta atggatccat atatcatgtc
    15601 ccgtcacaag tggaactgca agaagacacc tctgctcggg gcagaggctg ggtcttccga
    15661 tcgcatctcc cttctttctt cagtgagatc ctcttcttct ggaagctggt ttcacatggt
    15721 ggcttagatt tttccatctt tgtatctagc accatttgaa atcagtgttt taggagtaag
    15781 aattgcagca cagcaaaagg ccaaccgcag aggagctgct gctcgtggga tcagcttccc
    15841 tccttctgcc acctgagccg gttcaagaaa aggaagaact tgagaatcaa agtacactct
    15901 tgagtgtgtt gggttgtgga aggggacagt gcagggatgg ggtcgtgttc aatagaaact
    15961 cagaggcttg agcagagcca gaggttgtga ttgtctttct gttgacaggg agcggcaacc
    16021 cctagcagta gcctgttggt aaggcctttg agcacacgct tgggcaatgc cgggttgggt
    16081 acttgattgc aataggcaag gggaggggtg tggaccagaa ggactatctc atcacatcag
    16141 cactgtccac ctgctcctag atgccgtgaa acattcagct gcagttgccg agcagctgaa
    16201 atcagacttg ccacctgcac tgtcaaggtg ccggacccca ccgagcacca ctggacccat
    16261 ctcttacaca ggctgaccga tttctcctgg tgttcagagt ctgtttttgt ctagcaccat
    16321 ttgaaatcgg ttatgatgta gggggaaaag cagcagcctc gaggcctcat gccaagtctg
    16381 gtcagcaaca gcctggggct tcctggaaga tggatgcgca gagagagggg gaggaaggtt
    16441 atgctttttc ctgctagctt ctttaactac atctacaata ctttatgcac gggtaataga
    16501 tcagttaatg gatttttcag aagcaaatca ctaaaattta tctgatgtcc tcggtttgcc
    16561 gaaatgtggt agtgatgtaa actataaatt ggttgctgtt gaattatctt tcagtcatgc
    16621 atcctgacct taataaatgc tttactgtac acaatt
//
LOCUS       XR_004351821           16688 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X15, misc_RNA.
ACCESSION   XR_004351821
VERSION     XR_004351821.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16688
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16688
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16688
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X15"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg cgacgatggg
    10261 tggtccgatg ggcttcagga cttgatggcg taacccccgt cttcccccac tgtcagctgc
    10321 tcaagcctga ccgaggtaga ggaaagagga gcaagccgtc cctggcgtcc cacctgacct
    10381 cccagcctct acccccattt ccttctatcg ggcagacaga cagacacaca ggctggtttt
    10441 ccaagttgtt tgggtatcag tgtctgtccg tccatatggt tctcaggtag aaggtacgga
    10501 gtgaggagga gaagtgttga gaggaaggcg agaggggcag ctttctaggg gttgccttgt
    10561 tgaaacattc ggccctggga atccggggct gttggggagc aggtgggcag gatggggtgt
    10621 gggctgcgag aagtggggta aagctggtag gtttgtcact gcgtagttgg ggaaagtggg
    10681 gaatggtgac gcagtcactg ttggatcttg ttaggggctc tggggggaca ggtagtgagg
    10741 gtcccaggat ctgtagggcc agctgagagg ggttgaggat gagctgagaa gggaagctag
    10801 catttagaga ttaaatgtca tccttttggc gttggaaagt tgtttacctt gtgctctctg
    10861 tgtctccatg ttggcaccct tccagttcac atgtgatggc cttccttgta ctgctgcatc
    10921 attaactaag tgactgagct ggccttccat tggccagggg agggctctca ctccagacac
    10981 ttcctctgat tggtgggtgg accaatggca ggtgaaaacc tttttttgat tggctgaggg
    11041 aagggtatca aatctgaatt tgcatttcac ttgcttaaag gggagggggg ggaagcccag
    11101 cagctttcta aaatctgttt aggggtgtgc gtatgctcct gtgtctgtgc ctgcttctga
    11161 ctgaccggtt gaagcctctt cctgtgcctt tttaacttca tgcactgtaa gggagaggag
    11221 ctgagggctc cccaaacttt tgtttcggag gggcaggggt tgggaagatg ggcacgcaga
    11281 gggttgacca aactggaaga aaatactcgt tctttagtgg gaattttccg atcagccaca
    11341 cctcagcgtt gcggcaaaat aaatcttggc tcccctggaa acgcatgggc aaggtagggc
    11401 agagctgcta ctgctgctgt tgccgccacc ctgggcttcc tgctgactcc gggctcctcc
    11461 ccggggacag gagatttgca ttgacgtccc aggctgtcca gagctgagcc cattatggga
    11521 aggacctgcc ttctggaagc tgctgctccc cggtgcttgg aaaggtacca catccgtctg
    11581 gttcacggcg gttatttcat ttattcctca cctcaaccct gcgaggagag tcccatggcc
    11641 ggttcaccca agacaatggg gattttttgt agctgaaatt gatggactaa caaacttcag
    11701 ttttcctggt ctccttcctc tcgaaacagg aggcagagga gcttttgcat caggaaaaca
    11761 ccatggaaac gccatgagca ttggtggtgg cggagtgagg gttaaacagt gagccttcct
    11821 gggatccttt tgatgccagt gtgtcgggag cctggagatg gagcgctcag ccgagtggcc
    11881 aggacgttct gtcaacatga aagcagcaaa aacagtttgt cggggctcag cgctgacccc
    11941 gggctggtgt cattttcagg aagggcttgg cacaagaaag accaccgcca ggcacgggat
    12001 tgggggtgac gtcggataac tcagtaggcc cctatagacc cttgaatttt agaatctgaa
    12061 aagaaaatca gctgtttgtc ttttattaga tgagcttggc aaacaggatc acttcttgaa
    12121 ctcctctcac tggtccccaa caagagacat cttcccaggt tcagaaaacc ctttgggatt
    12181 tctcggttgt ggcttattgc cttggatgga gggcaggtcc cttctagggg gcaggggtgg
    12241 gcctggcagt cctagtgccc gttatgggga tatggagtcg taggtttcct ctgctggcat
    12301 cacgtgaaga cggtggatcc acatcacagg ccttgagctg aagaccagct cttgggcagc
    12361 ccacttcagc ctctcctttc cttattatct caaatcaaag tcttatcttc tccccttcat
    12421 cttcctcatt tctttcttag gcgcagtagt gggcctgaag tccttgacct ttgcgtctgt
    12481 gtgtgtgtca tcatggcggc tcagggttct agacttttct tgaatctgca gcattgcgct
    12541 ttgtgcgcgt gacgcccccc cccccccccg ctccgccccg cccacccggc cccgccccac
    12601 caggccttct tcggagcaag agagaacatg ggcctccatc gccactgaac ctcagccaag
    12661 ccgtcatccc cagcatctgg cctcccttct ctcctccccc gctttcggcc agtgtctggg
    12721 gtggaggagc aaacaacttg tgggaggaga tggagggaca gcctggcctg gagctctctg
    12781 cctcctttcc tcgtgtgcca tttttcagcc tcacgcttcc tgtggatgga tgatgccagc
    12841 actgacattt gtcgccgagc gcctcctctc cccaaggact tccccgcgtg actcttttgg
    12901 ggtctggaaa gagtggctct ggggccttgg gagccagagg ggacaggggg acctggccca
    12961 ggtcacagca gactgtgaga cgggcgaggg gtgggagctg gccgaaccca cccaagcgca
    13021 aaggcagccc cggccccttt gcgtcatgtc tttttcagcc tgaggagaga gcaacttgac
    13081 ctaaaaaaat tgtatatatg tgggtgttgg atcctttgtg tctctttgtc cagaagctgt
    13141 gcatgtgatg agagcccagg tctctgtact gtacagagaa ctgttgtcct tcaggtttgt
    13201 tttcagaaag atgtgatgga tgggccgtcc ttgatgagac cgcgtgcccg ctgggactgg
    13261 ccttcctcca ggatgctggg cccggcgtgg tgtttcttct gtcagtggac gagaactcag
    13321 aggagttcag ctccatgagt aggtgacaaa ctcctggaga ctcagctgac gatggtgccg
    13381 gtgtgcagaa gacagttgtc atcctgtggg ataagcgtgt gcccgtttgc atttatttgg
    13441 aacaaaaaaa ggagctgcct ggcagcctgg ctctctgcaa ggtgctgttg agcccctggt
    13501 ttgtgtggtt ctgtgaccac aagtgctgat ggatgtggcg ccatcccagt cttgtcggtg
    13561 aaccatcacc agcctgctta ttggaaacca ggcgcagcaa ggaagctagg attcaacgcc
    13621 ctccttccct gcctcccagc ccgcctccaa aagaatttaa tctgctggac aacaaacaat
    13681 actgttataa aactttgaaa acaagagggc gcggcctccc tgacaaggag aagggcatgc
    13741 cgggtaatgg gcgagggagc ctgccaggcc cgagatggag ccaggcaaga gcccagttgg
    13801 ctgggcacct gggtgcccgc ccctgcccag cccaccagcc gtgccatccc cagtccagag
    13861 gagaaggaac cgaaacaaaa gtgggggcag cggagctctt gaaaagggga agttgtcctg
    13921 agactggcag acagaggtcc tgataacaga atgaggctgg catagccgtg aaggtacagc
    13981 caccagcctg gccagctgca ggggaagcag gagagaaagg tgctccaagc tggctttgga
    14041 ctccagacct accctctgtc tgcccagcct cccacccccc acctagggaa gtggaaccag
    14101 gtcatgggca tgacccggtc catgtgctct gccaggagcc ctgaaaccag cattcccagc
    14161 ggcaggaaga tggatgatct gggctccact tccggcgctc ctcccccact ctggctggaa
    14221 cttgcgtcag tcatatcaag gaggccctcg ggttgggtgc cagggagagc aagctgcttc
    14281 cagccgcatg aaatcacctg gctacttgca actaggggac aaaatcagca tctggtttca
    14341 gagaaccgag agtattttag aactcgagag ttggagccca aactcagccg tgcagtggag
    14401 accacagagg caccagggtg ctggagaaca aagcaagtat cgaagcaccg gctccttgca
    14461 gaaccaggcg tgctctcatc tccacccaag tttaatgtgt tgtacagtca gtaataccca
    14521 cccccatcta tgcagaaata ttgcctagga ctaccctcac cctcaatctt cctcataatt
    14581 aagttcaaga acagaatgag acggtagtcc agctacagaa caggaggcag tgggcagaag
    14641 agtaggagca cagactttgg agtcagacct ggaatcgaca ccattcacta gtcatgggac
    14701 tgtggacaag tttttgaacc acactgagga tcagtttctt ctcctgccaa aaagggaata
    14761 ctacctactc cgcaagactg ttgtgagaat tcaagagcac agcttggtgt tcaaatttta
    14821 tttccttctc ttccctagag cagcacatga tgttatgtcc aggaggcgta aaaagtagaa
    14881 gggtttatct agagtcctga agaattggta gggaaccgga gagatgcaga ttcttctttc
    14941 tcctggttat ggtatcagag gaaatacaga catattttct tagcttcaaa caaccaaaaa
    15001 agatggtgca agtaggagat gagaaatcta atttgaacac catttgcaaa cctaattttc
    15061 aggcagaatt tgaaaacaac acaaaacaaa actccattct tttattagag gattatctac
    15121 ttagtacaat tataagacac taatcttttt gtgtcacagt agagaataaa taagattggc
    15181 aattaacggg gtcatatttg aatgtcctga ctgctcacgt atggctggga aggcggagcc
    15241 cgtgatctac gtgactagga cacatggaag tgttgccctg gctcaggtga aacccacctt
    15301 tgtgtagtgt ctagagcctc acaggcagaa agggtgcttg tttcctgatg acgtgagaaa
    15361 atatgggaaa atgctttgca cactgtgaaa tagtttacaa agcagggcaa tactaatgta
    15421 catattaacc cagtttagta acagctttgg ctattttatt tcgtcatata tataataatc
    15481 tgtagggact ggttatggaa ttaagtaact tagaattcat gagttttgta ttgcgattgt
    15541 ctgtgtaaat taccagcttt gactttcgtg ttctttgagc atcactttgt aactcttctc
    15601 tgtgcctttc taatggatcc atatatcatg tcccgtcaca agtggaactg caagaagaca
    15661 cctctgctcg gggcagaggc tgggtcttcc gatcgcatct cccttctttc ttcagtgaga
    15721 tcctcttctt ctggaagctg gtttcacatg gtggcttaga tttttccatc tttgtatcta
    15781 gcaccatttg aaatcagtgt tttaggagta agaattgcag cacagcaaaa ggccaaccgc
    15841 agaggagctg ctgctcgtgg gatcagcttc cctccttctg ccacctgagc cggttcaaga
    15901 aaaggaagaa cttgagaatc aaagtacact cttgagtgtg ttgggttgtg gaaggggaca
    15961 gtgcagggat ggggtcgtgt tcaatagaaa ctcagaggct tgagcagagc cagaggttgt
    16021 gattgtcttt ctgttgacag ggagcggcaa cccctagcag tagcctgttg gtaaggcctt
    16081 tgagcacacg cttgggcaat gccgggttgg gtacttgatt gcaataggca aggggagggg
    16141 tgtggaccag aaggactatc tcatcacatc agcactgtcc acctgctcct agatgccgtg
    16201 aaacattcag ctgcagttgc cgagcagctg aaatcagact tgccacctgc actgtcaagg
    16261 tgccggaccc caccgagcac cactggaccc atctcttaca caggctgacc gatttctcct
    16321 ggtgttcaga gtctgttttt gtctagcacc atttgaaatc ggttatgatg tagggggaaa
    16381 agcagcagcc tcgaggcctc atgccaagtc tggtcagcaa cagcctgggg cttcctggaa
    16441 gatggatgcg cagagagagg gggaggaagg ttatgctttt tcctgctagc ttctttaact
    16501 acatctacaa tactttatgc acgggtaata gatcagttaa tggatttttc agaagcaaat
    16561 cactaaaatt tatctgatgt cctcggtttg ccgaaatgtg gtagtgatgt aaactataaa
    16621 ttggttgctg ttgaattatc tttcagtcat gcatcctgac cttaataaat gctttactgt
    16681 acacaatt
//
LOCUS       XR_004351822           10794 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X16, misc_RNA.
ACCESSION   XR_004351822
VERSION     XR_004351822.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10794
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10794
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..10794
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X16"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gtggcggagg agatgggaag ggcagaagcc aaggtaaggc caagcaacca gggagatgta
       61 cagatgctct cctgagtgca tttgacattc ttgccccagg tcgcttctca gtgttgttcc
      121 cctgcccctg acacagtccc tcagtttcca tgagttcgag ggagaccagc atatttttgg
      181 atgggctcaa gccaaacggt gaggaaagta atgctactta gtggactaaa taccagtgat
      241 gttggagtta cctgcttttg gttgttgttt ttttgtttgt ttagagtttt ctgtctcctt
      301 ttgttcatag aagtcacttg ggggatggat tatctgataa atcctggtgt tctcggagtt
      361 cacgttcact gcttccctta tcctcatgtg aaggactaag atgatgattg tgggctccgg
      421 aaccatgttt tagattattg ctgtctgatc cagcagccag gacagccgaa accaaaagcc
      481 tctgaagtcc tgttcagcga tggaaatgtg gttggtccca cctttgtccc tggagttgtc
      541 aagcatgaaa atggggagga gttcatcagg gaaggacaga gttcggagga agtctcctaa
      601 gaggaggatg tcactagctt gcctagcaca gtggttggga gtctggtact ggctgcatac
      661 cctgcacagg ctcctcagcc cctaacctgt aaagtggagg tgatggccat cccagcttcc
      721 aagtgccgtg gtgaggaccg actgagctgt gatacacgca tggggccggc accaggcctg
      781 atgcgtggtg agtgattagt ggatattgag gtccacgttc atgaggcgga tgctgtttgg
      841 acagtgagaa aatgagttcc ggcttttaaa gagcagactt tggaaacatc agagatgcta
      901 atttgggaat gcttgtaggg tcctctcaca gaacctgtac gtcttgaggc ggtaaacaga
      961 aacaccttct ccctgtggac ctgaacctgt cagtgctgcc cgagaccaga ccgctgcctg
     1021 atttatctag aacacccact cgagcccttg atactcgtgt ggagtttgag atcagtcccc
     1081 tgtacagagc tccctgtctt gagagaaatg acttctttcc tgatgaaaga tccagcccgt
     1141 gttcaggagg ccctaatgag gaaatgggag gacagagagg ctgcactaag cctgcgctgt
     1201 tggctgatgc ccgccgaact ggagttcgtg gcaattccag agtgcttgca ttccaaaccc
     1261 agggcgaggg ctgggtaaaa gtccagctca tcccctttaa agaaaaaaat tcttcctctc
     1321 tgacatttcg aggttttgac ccagatcagt cagaggccac ggagagctcg caatgtctgg
     1381 agagtgtgtt tagttcccga ggcctggagc tgcagagaag ccggagcgag ccagtgacct
     1441 gctgggcttg agttgaagcc ctgccttttc aagtgtgccc tggcccagcc tccccagacc
     1501 tcacagggtg gacggaagga gccagcacct tcccctcact ccaaagttat ctttaccccc
     1561 tgaaatcaaa catcgcatgc agcaccctgt aaaactgctt ccttgtaggc ttgagcgtgc
     1621 ttgctgagta aacatcctcc catgtttttg gaactgaatc catttctgct tcctggtcat
     1681 cccatgcggg ttctttctgt tctgggtgcc atgcagaatc aggttaatag aaggcagacc
     1741 tagcgttggg caggggcacc taaaatgaca gtttcaacct tagtaaattg taaggagagt
     1801 aacagcgtcg tgggaagaaa gagaaaagac ttagacgaaa aatgaaatga aacagagcct
     1861 cccaaacata gtgctgccat catgctttgc aagtcagagt tggttcctgc cgagccctga
     1921 gacggggacc ttcctttgca tgggctcaag ctcagttgtg cggtggctga accacagtca
     1981 gcctccgtct gtaggttgtg tggctgcgtc tggccctcct gaccctaact tgctcttgcc
     2041 ccgtctctcg tgacttattt gcctcttctc tctcacttcc acccacccgt gacatctcca
     2101 tcgccatggc attgagcagc cacgtcatcc accatgttca cggggtgatg ggccaactct
     2161 gtgctgagcc ctacttcctt ctcgttctcc ctcctgaagc aggaggctcc ctggcagagc
     2221 tcaaagccct ttgtttattt gatcctgggc gtcttggata aatcaggaat gtcctgacat
     2281 gaacttaggc atgtttttct tccatggaaa aggaaactac ggcaaatggt atttaagtag
     2341 gcagaggacc attccggggg acttgcgttg gtgccatcaa ggccacattc ctttggtcat
     2401 cagaccagta ggtgacttct ttattggcat gctctaccct ggagcccaga aggtgtgaat
     2461 ttgaagcact ttctcccctg ctgagagctt ggcacagatg ctctggactt cttttaaagc
     2521 catggagtac catggttgtc ttccaggtgg tcttctttct gctgggtgaa accttggccc
     2581 agagtagttg cttgaagaag gctgcttggg agttggggta caggataagg ttgctgcctg
     2641 gcctctcatt ctccagccgt cttgaagttg caatgatctc gatgtgtgat ctactttgag
     2701 tcagctgccc caggacctga acacttccga tcagggctag gctcttgtgg tacaaccggt
     2761 cgccagaaac ctttgcgggt ctgctttctt tggatgtggc gttgtgggaa cccaagaatt
     2821 cctgagtctg tctaggtata tggagtccag tgagtttagc atctgagttg ttctggaact
     2881 atttctgggt ctgggggcag gaaaatgttg ggagctatgt gctttgctgc agtggagacc
     2941 tgtcagtaac caaaaaacaa gcccagtcag tctccagagc attggtggga accccccccc
     3001 cccccagctc cctgtgagag tttccaggtg tgaatgccca tgtattacca tggcaggggc
     3061 agtgcggggt gggctggcgg gtgctcatct catttggcca cctgccctgg agagaagaag
     3121 ccagtcgttg gccactgcag gtccaggctt ggctgccgct ctgttttgct gcttttcatg
     3181 ttgtcagagg atcttcttgg gaacaaatga ctcagcaacc tgaatctctg ggactgagta
     3241 gcctaagtgc cttttgagaa gtgattggac ctatctgcac aggccctaaa attctgagcc
     3301 ccggaagagt ggagatccgg actggtttta ctatagattc ttcaggccgc cgctcaattt
     3361 ggtttctcca attcctgccc cagtagaagg agctcactca tggggtaagc aggcaatgtt
     3421 ttaattatgc tttttgtcct tagaaaattc caggaagaaa aaagatcctg gtctgtggcc
     3481 aaaaaagcag aaaacaacga aaatcagcga cggctgtaat tctggacttg tctgtggcag
     3541 aaagagttaa taggacggtg gtctcagggt gggggccgtt atattctcgg gtccaggaga
     3601 agctcacgtg gttcaagaaa agatgacgcc acatttagtg tgggacagcc ctgtctgggt
     3661 tctgggcgct gtcactcaaa gagttaagct agtcttatgg ctggggagcc ctcagggaag
     3721 gcctgagcct gcagggacca ggccctctac gccccagagc agtgaggtct ggggtaaaag
     3781 aggggctgag aagtgtggcc aggaaagccg agtgtaggcc caactttttt ttttgccttg
     3841 tttgaccagc cttggcactg ccctctggct ctccagggga aaagctgcag ttctgctctt
     3901 gcaacacaag gagcagactg gagaatttag atctgcgtca cagagctcag agagagagag
     3961 aggagagagg ggagagagag agggagagag agagagagcg cgagcgctcc gtcgataggt
     4021 ctgctagcaa cagccgtgct gcagcagaga gagagagaga aatcaagaaa caagtcatag
     4081 caacaccggg caccaggttc tgccagctca cttgccaagc gttcagaaat ctgtcagggg
     4141 ccggaggcct ctgggtagcc taggctaagg agatgacacg caaggtggca cgggcggttc
     4201 ccgcggggag gaggcgacga tgggtggtcc gatgggcttc aggacttgat ggcgtaaccc
     4261 ccgtcttccc ccacgtacgt atttgctggg atcgggggcg atgtctctgc gtatgtgggt
     4321 gctctgtctt tctcaccttc tttcttgctt tttgctattt tttttttttt ttttctgagg
     4381 gaggggtttt ttccacttta atttcttttc ccttagtgtc agctgctcaa gcctgaccga
     4441 ggtagaggaa agaggagcaa gccgtccctg gcgtcccacc tgacctccca gcctctaccc
     4501 ccatttcctt ctatcgggca gacagacaga cacacaggct ggttttccaa gttgtttggg
     4561 tatcagtgtc tgtccgtcca tatggttctc aggtagaagg tacggagtga ggaggagaag
     4621 tgttgagagg aaggcgagag gggcagcttt ctaggggttg ccttgttgaa acattcggcc
     4681 ctgggaatcc ggggctgttg gggagcaggt gggcaggatg gggtgtgggc tgcgagaagt
     4741 ggggtaaagc tggtaggttt gtcactgcgt agttggggaa agtggggaat ggtgacgcag
     4801 tcactgttgg atcttgttag gggctctggg gggacaggta gtgagggtcc caggatctgt
     4861 agggccagct gagaggggtt gaggatgagc tgagaaggga agctagcatt tagagattaa
     4921 atgtcatcct tttggcgttg gaaagttgtt taccttgtgc tctctgtgtc tccatgttgg
     4981 cacccttcca gttcacatgt gatggccttc cttgtactgc tgcatcatta actaagtgac
     5041 tgagctggcc ttccattggc caggggaggg ctctcactcc agacacttcc tctgattggt
     5101 gggtggacca atggcaggtg aaaacctttt tttgattggc tgagggaagg gtatcaaatc
     5161 tgaatttgca tttcacttgc ttaaagggga ggggggggaa gcccagcagc tttctaaaat
     5221 ctgtttaggg gtgtgcgtat gctcctgtgt ctgtgcctgc ttctgactga ccggttgaag
     5281 cctcttcctg tgccttttta acttcatgca ctgtaaggga gaggagctga gggctcccca
     5341 aacttttgtt tcggaggggc aggggttggg aagatgggca cgcagagggt tgaccaaact
     5401 ggaagaaaat actcgttctt tagtgggaat tttccgatca gccacacctc agcgttgcgg
     5461 caaaataaat cttggctccc ctggaaacgc atgggcaagg tagggcagag ctgctactgc
     5521 tgctgttgcc gccaccctgg gcttcctgct gactccgggc tcctccccgg ggacaggaga
     5581 tttgcattga cgtcccaggc tgtccagagc tgagcccatt atgggaagga cctgccttct
     5641 ggaagctgct gctccccggt gcttggaaag gtaccacatc cgtctggttc acggcggtta
     5701 tttcatttat tcctcacctc aaccctgcga ggagagtccc atggccggtt cacccaagac
     5761 aatggggatt ttttgtagct gaaattgatg gactaacaaa cttcagtttt cctggtctcc
     5821 ttcctctcga aacaggaggc agaggagctt ttgcatcagg aaaacaccat ggaaacgcca
     5881 tgagcattgg tggtggcgga gtgagggtta aacagtgagc cttcctggga tccttttgat
     5941 gccagtgtgt cgggagcctg gagatggagc gctcagccga gtggccagga cgttctgtca
     6001 acatgaaagc agcaaaaaca gtttgtcggg gctcagcgct gaccccgggc tggtgtcatt
     6061 ttcaggaagg gcttggcaca agaaagacca ccgccaggca cgggattggg ggtgacgtcg
     6121 gataactcag taggccccta tagacccttg aattttagaa tctgaaaaga aaatcagctg
     6181 tttgtctttt attagatgag cttggcaaac aggatcactt cttgaactcc tctcactggt
     6241 ccccaacaag agacatcttc ccaggttcag aaaacccttt gggatttctc ggttgtggct
     6301 tattgccttg gatggagggc aggtcccttc tagggggcag gggtgggcct ggcagtccta
     6361 gtgcccgtta tggggatatg gagtcgtagg tttcctctgc tggcatcacg tgaagacggt
     6421 ggatccacat cacaggcctt gagctgaaga ccagctcttg ggcagcccac ttcagcctct
     6481 cctttcctta ttatctcaaa tcaaagtctt atcttctccc cttcatcttc ctcatttctt
     6541 tcttaggcgc agtagtgggc ctgaagtcct tgacctttgc gtctgtgtgt gtgtcatcat
     6601 ggcggctcag ggttctagac ttttcttgaa tctgcagcat tgcgctttgt gcgcgtgacg
     6661 cccccccccc cccccgctcc gccccgccca cccggccccg ccccaccagg ccttcttcgg
     6721 agcaagagag aacatgggcc tccatcgcca ctgaacctca gccaagccgt catccccagc
     6781 atctggcctc ccttctctcc tcccccgctt tcggccagtg tctggggtgg aggagcaaac
     6841 aacttgtggg aggagatgga gggacagcct ggcctggagc tctctgcctc ctttcctcgt
     6901 gtgccatttt tcagcctcac gcttcctgtg gatggatgat gccagcactg acatttgtcg
     6961 ccgagcgcct cctctcccca aggacttccc cgcgtgactc ttttggggtc tggaaagagt
     7021 ggctctgggg ccttgggagc cagaggggac agggggacct ggcccaggtc acagcagact
     7081 gtgagacggg cgaggggtgg gagctggccg aacccaccca agcgcaaagg cagccccggc
     7141 ccctttgcgt catgtctttt tcagcctgag gagagagcaa cttgacctaa aaaaattgta
     7201 tatatgtggg tgttggatcc tttgtgtctc tttgtccaga agctgtgcat gtgatgagag
     7261 cccaggtctc tgtactgtac agagaactgt tgtccttcag gtttgttttc agaaagatgt
     7321 gatggatggg ccgtccttga tgagaccgcg tgcccgctgg gactggcctt cctccaggat
     7381 gctgggcccg gcgtggtgtt tcttctgtca gtggacgaga actcagagga gttcagctcc
     7441 atgagtaggt gacaaactcc tggagactca gctgacgatg gtgccggtgt gcagaagaca
     7501 gttgtcatcc tgtgggataa gcgtgtgccc gtttgcattt atttggaaca aaaaaaggag
     7561 ctgcctggca gcctggctct ctgcaaggtg ctgttgagcc cctggtttgt gtggttctgt
     7621 gaccacaagt gctgatggat gtggcgccat cccagtcttg tcggtgaacc atcaccagcc
     7681 tgcttattgg aaaccaggcg cagcaaggaa gctaggattc aacgccctcc ttccctgcct
     7741 cccagcccgc ctccaaaaga atttaatctg ctggacaaca aacaatactg ttataaaact
     7801 ttgaaaacaa gagggcgcgg cctccctgac aaggagaagg gcatgccggg taatgggcga
     7861 gggagcctgc caggcccgag atggagccag gcaagagccc agttggctgg gcacctgggt
     7921 gcccgcccct gcccagccca ccagccgtgc catccccagt ccagaggaga aggaaccgaa
     7981 acaaaagtgg gggcagcgga gctcttgaaa aggggaagtt gtcctgagac tggcagacag
     8041 aggtcctgat aacagaatga ggctggcata gccgtgaagg tacagccacc agcctggcca
     8101 gctgcagggg aagcaggaga gaaaggtgct ccaagctggc tttggactcc agacctaccc
     8161 tctgtctgcc cagcctccca ccccccacct agggaagtgg aaccaggtca tgggcatgac
     8221 ccggtccatg tgctctgcca ggagccctga aaccagcatt cccagcggca ggaagatgga
     8281 tgatctgggc tccacttccg gcgctcctcc cccactctgg ctggaacttg cgtcagtcat
     8341 atcaaggagg ccctcgggtt gggtgccagg gagagcaagc tgcttccagc cgcatgaaat
     8401 cacctggcta cttgcaacta ggggacaaaa tcagcatctg gtttcagaga accgagagta
     8461 ttttagaact cgagagttgg agcccaaact cagccgtgca gtggagacca cagaggcacc
     8521 agggtgctgg agaacaaagc aagtatcgaa gcaccggctc cttgcagaac caggcgtgct
     8581 ctcatctcca cccaagttta atgtgttgta cagtcagtaa tacccacccc catctatgca
     8641 gaaatattgc ctaggactac cctcaccctc aatcttcctc ataattaagt tcaagaacag
     8701 aatgagacgg tagtccagct acagaacagg aggcagtggg cagaagagta ggagcacaga
     8761 ctttggagtc agacctggaa tcgacaccat tcactagtca tgggactgtg gacaagtttt
     8821 tgaaccacac tgaggatcag tttcttctcc tgccaaaaag ggaatactac ctactccgca
     8881 agactgttgt gagaattcaa gagcacagct tggtgttcaa attttatttc cttctcttcc
     8941 ctagagcagc acatgatgtt atgtccagga ggcgtaaaaa gtagaagggt ttatctagag
     9001 tcctgaagaa ttggtaggga accggagaga tgcagattct tctttctcct ggttatggta
     9061 tcagaggaaa tacagacata ttttcttagc ttcaaacaac caaaaaagat ggtgcaagta
     9121 ggagatgaga aatctaattt gaacaccatt tgcaaaccta attttcaggc agaatttgaa
     9181 aacaacacaa aacaaaactc cattctttta ttagaggatt atctacttag tacaattata
     9241 agacactaat ctttttgtgt cacagtagag aataaataag attggcaatt aacggggtca
     9301 tatttgaatg tcctgactgc tcacgtatgg ctgggaaggc ggagcccgtg atctacgtga
     9361 ctaggacaca tggaagtgtt gccctggctc aggtgaaacc cacctttgtg tagtgtctag
     9421 agcctcacag gcagaaaggg tgcttgtttc ctgatgacgt gagaaaatat gggaaaatgc
     9481 tttgcacact gtgaaatagt ttacaaagca gggcaatact aatgtacata ttaacccagt
     9541 ttagtaacag ctttggctat tttatttcgt catatatata ataatctgta gggactggtt
     9601 atggaattaa gtaacttaga attcatgagt tttgtattgc gattgtctgt gtaaattacc
     9661 agctttgact ttcgtgttct ttgagcatca ctttgtaact cttctctgtg cctttctaat
     9721 ggatccatat atcatgtccc gtcacaagtg gaactgcaag aagacacctc tgctcggggc
     9781 agaggctggg tcttccgatc gcatctccct tctttcttca gtgagatcct cttcttctgg
     9841 aagctggttt cacatggtgg cttagatttt tccatctttg tatctagcac catttgaaat
     9901 cagtgtttta ggagtaagaa ttgcagcaca gcaaaaggcc aaccgcagag gagctgctgc
     9961 tcgtgggatc agcttccctc cttctgccac ctgagccggt tcaagaaaag gaagaacttg
    10021 agaatcaaag tacactcttg agtgtgttgg gttgtggaag gggacagtgc agggatgggg
    10081 tcgtgttcaa tagaaactca gaggcttgag cagagccaga ggttgtgatt gtctttctgt
    10141 tgacagggag cggcaacccc tagcagtagc ctgttggtaa ggcctttgag cacacgcttg
    10201 ggcaatgccg ggttgggtac ttgattgcaa taggcaaggg gaggggtgtg gaccagaagg
    10261 actatctcat cacatcagca ctgtccacct gctcctagat gccgtgaaac attcagctgc
    10321 agttgccgag cagctgaaat cagacttgcc acctgcactg tcaaggtgcc ggaccccacc
    10381 gagcaccact ggacccatct cttacacagg ctgaccgatt tctcctggtg ttcagagtct
    10441 gtttttgtct agcaccattt gaaatcggtt atgatgtagg gggaaaagca gcagcctcga
    10501 ggcctcatgc caagtctggt cagcaacagc ctggggcttc ctggaagatg gatgcgcaga
    10561 gagaggggga ggaaggttat gctttttcct gctagcttct ttaactacat ctacaatact
    10621 ttatgcacgg gtaatagatc agttaatgga tttttcagaa gcaaatcact aaaatttatc
    10681 tgatgtcctc ggtttgccga aatgtggtag tgatgtaaac tataaattgg ttgctgttga
    10741 attatctttc agtcatgcat cctgacctta ataaatgctt tactgtacac aatt
//
LOCUS       XR_004351823           10690 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X17, misc_RNA.
ACCESSION   XR_004351823
VERSION     XR_004351823.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10690
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10690
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..10690
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X17"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gtggcggagg agatgggaag ggcagaagcc aaggtaaggc caagcaacca gggagatgta
       61 cagatgctct cctgagtgca tttgacattc ttgccccagg tcgcttctca gtgttgttcc
      121 cctgcccctg acacagtccc tcagtttcca tgagttcgag ggagaccagc atatttttgg
      181 atgggctcaa gccaaacggt gaggaaagta atgctactta gtggactaaa taccagtgat
      241 gttggagtta cctgcttttg gttgttgttt ttttgtttgt ttagagtttt ctgtctcctt
      301 ttgttcatag aagtcacttg ggggatggat tatctgataa atcctggtgt tctcggagtt
      361 cacgttcact gcttccctta tcctcatgtg aaggactaag atgatgattg tgggctccgg
      421 aaccatgttt tagattattg ctgtctgatc cagcagccag gacagccgaa accaaaagcc
      481 tctgaagtcc tgttcagcga tggaaatgtg gttggtccca cctttgtccc tggagttgtc
      541 aagcatgaaa atggggagga gttcatcagg gaaggacaga gttcggagga agtctcctaa
      601 gaggaggatg tcactagctt gcctagcaca gtggttggga gtctggtact ggctgcatac
      661 cctgcacagg ctcctcagcc cctaacctgt aaagtggagg tgatggccat cccagcttcc
      721 aagtgccgtg gtgaggaccg actgagctgt gatacacgca tggggccggc accaggcctg
      781 atgcgtggtg agtgattagt ggatattgag gtccacgttc atgaggcgga tgctgtttgg
      841 acaggcggta aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag
      901 accagaccgc tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag
      961 tttgagatca gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat
     1021 gaaagatcca gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc
     1081 actaagcctg cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg
     1141 cttgcattcc aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa
     1201 aaaaattctt cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag
     1261 agctcgcaat gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg
     1321 agcgagccag tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc
     1381 ccagcctccc cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa
     1441 agttatcttt accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt
     1501 gtaggcttga gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt
     1561 tctgcttcct ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt
     1621 taatagaagg cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt
     1681 aaattgtaag gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg
     1741 aaatgaaaca gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt
     1801 tcctgccgag ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt
     1861 ggctgaacca cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc
     1921 ctaacttgct cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc
     1981 acccgtgaca tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg
     2041 gtgatgggcc aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga
     2101 ggctccctgg cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc
     2161 aggaatgtcc tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca
     2221 aatggtattt aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc
     2281 acattccttt ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag
     2341 cccagaaggt gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct
     2401 ggacttcttt taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg
     2461 ggtgaaacct tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg
     2521 ataaggttgc tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg
     2581 tgtgatctac tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc
     2641 ttgtggtaca accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg
     2701 tgggaaccca agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct
     2761 gagttgttct ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt
     2821 tgctgcagtg gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg
     2881 gtgggaaccc cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta
     2941 ttaccatggc aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg
     3001 ccctggagag aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt
     3061 tttgctgctt ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa
     3121 tctctgggac tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc
     3181 cctaaaattc tgagccccgg aagagtggag atccggactg gttttactat agattcttca
     3241 ggccgccgct caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg
     3301 gtaagcaggc aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag
     3361 atcctggtct gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg
     3421 gacttgtctg tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat
     3481 tctcgggtcc aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg
     3541 acagccctgt ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg
     3601 ggagccctca gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg
     3661 aggtctgggg taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac
     3721 tttttttttt gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag
     3781 ctgcagttct gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga
     3841 gctcagagag agagagagga gagaggggag agagagaggg agagagagag agagcgcgag
     3901 cgctccgtcg ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc
     3961 aagaaacaag tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc
     4021 agaaatctgt caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag
     4081 gtggcacggg cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga
     4141 cttgatggcg taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt
     4201 ctctgcgtat gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt
     4261 tttttttttt ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct
     4321 gctcaagcct gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac
     4381 ctcccagcct ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt
     4441 ttccaagttg tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg
     4501 gagtgaggag gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt
     4561 gttgaaacat tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt
     4621 gtgggctgcg agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg
     4681 gggaatggtg acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga
     4741 gggtcccagg atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct
     4801 agcatttaga gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc
     4861 tgtgtctcca tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca
     4921 tcattaacta agtgactgag ctggccttcc attggccagg ggagggctct cactccagac
     4981 acttcctctg attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag
     5041 ggaagggtat caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc
     5101 agcagctttc taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct
     5161 gactgaccgg ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg
     5221 agctgagggc tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca
     5281 gagggttgac caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca
     5341 cacctcagcg ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg
     5401 gcagagctgc tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct
     5461 ccccggggac aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg
     5521 gaaggacctg ccttctggaa gctgctgctc cccggtgctt ggaaaggtac cacatccgtc
     5581 tggttcacgg cggttatttc atttattcct cacctcaacc ctgcgaggag agtcccatgg
     5641 ccggttcacc caagacaatg gggatttttt gtagctgaaa ttgatggact aacaaacttc
     5701 agttttcctg gtctccttcc tctcgaaaca ggaggcagag gagcttttgc atcaggaaaa
     5761 caccatggaa acgccatgag cattggtggt ggcggagtga gggttaaaca gtgagccttc
     5821 ctgggatcct tttgatgcca gtgtgtcggg agcctggaga tggagcgctc agccgagtgg
     5881 ccaggacgtt ctgtcaacat gaaagcagca aaaacagttt gtcggggctc agcgctgacc
     5941 ccgggctggt gtcattttca ggaagggctt ggcacaagaa agaccaccgc caggcacggg
     6001 attgggggtg acgtcggata actcagtagg cccctataga cccttgaatt ttagaatctg
     6061 aaaagaaaat cagctgtttg tcttttatta gatgagcttg gcaaacagga tcacttcttg
     6121 aactcctctc actggtcccc aacaagagac atcttcccag gttcagaaaa ccctttggga
     6181 tttctcggtt gtggcttatt gccttggatg gagggcaggt cccttctagg gggcaggggt
     6241 gggcctggca gtcctagtgc ccgttatggg gatatggagt cgtaggtttc ctctgctggc
     6301 atcacgtgaa gacggtggat ccacatcaca ggccttgagc tgaagaccag ctcttgggca
     6361 gcccacttca gcctctcctt tccttattat ctcaaatcaa agtcttatct tctccccttc
     6421 atcttcctca tttctttctt aggcgcagta gtgggcctga agtccttgac ctttgcgtct
     6481 gtgtgtgtgt catcatggcg gctcagggtt ctagactttt cttgaatctg cagcattgcg
     6541 ctttgtgcgc gtgacgcccc cccccccccc cgctccgccc cgcccacccg gccccgcccc
     6601 accaggcctt cttcggagca agagagaaca tgggcctcca tcgccactga acctcagcca
     6661 agccgtcatc cccagcatct ggcctccctt ctctcctccc ccgctttcgg ccagtgtctg
     6721 gggtggagga gcaaacaact tgtgggagga gatggaggga cagcctggcc tggagctctc
     6781 tgcctccttt cctcgtgtgc catttttcag cctcacgctt cctgtggatg gatgatgcca
     6841 gcactgacat ttgtcgccga gcgcctcctc tccccaagga cttccccgcg tgactctttt
     6901 ggggtctgga aagagtggct ctggggcctt gggagccaga ggggacaggg ggacctggcc
     6961 caggtcacag cagactgtga gacgggcgag gggtgggagc tggccgaacc cacccaagcg
     7021 caaaggcagc cccggcccct ttgcgtcatg tctttttcag cctgaggaga gagcaacttg
     7081 acctaaaaaa attgtatata tgtgggtgtt ggatcctttg tgtctctttg tccagaagct
     7141 gtgcatgtga tgagagccca ggtctctgta ctgtacagag aactgttgtc cttcaggttt
     7201 gttttcagaa agatgtgatg gatgggccgt ccttgatgag accgcgtgcc cgctgggact
     7261 ggccttcctc caggatgctg ggcccggcgt ggtgtttctt ctgtcagtgg acgagaactc
     7321 agaggagttc agctccatga gtaggtgaca aactcctgga gactcagctg acgatggtgc
     7381 cggtgtgcag aagacagttg tcatcctgtg ggataagcgt gtgcccgttt gcatttattt
     7441 ggaacaaaaa aaggagctgc ctggcagcct ggctctctgc aaggtgctgt tgagcccctg
     7501 gtttgtgtgg ttctgtgacc acaagtgctg atggatgtgg cgccatccca gtcttgtcgg
     7561 tgaaccatca ccagcctgct tattggaaac caggcgcagc aaggaagcta ggattcaacg
     7621 ccctccttcc ctgcctccca gcccgcctcc aaaagaattt aatctgctgg acaacaaaca
     7681 atactgttat aaaactttga aaacaagagg gcgcggcctc cctgacaagg agaagggcat
     7741 gccgggtaat gggcgaggga gcctgccagg cccgagatgg agccaggcaa gagcccagtt
     7801 ggctgggcac ctgggtgccc gcccctgccc agcccaccag ccgtgccatc cccagtccag
     7861 aggagaagga accgaaacaa aagtgggggc agcggagctc ttgaaaaggg gaagttgtcc
     7921 tgagactggc agacagaggt cctgataaca gaatgaggct ggcatagccg tgaaggtaca
     7981 gccaccagcc tggccagctg caggggaagc aggagagaaa ggtgctccaa gctggctttg
     8041 gactccagac ctaccctctg tctgcccagc ctcccacccc ccacctaggg aagtggaacc
     8101 aggtcatggg catgacccgg tccatgtgct ctgccaggag ccctgaaacc agcattccca
     8161 gcggcaggaa gatggatgat ctgggctcca cttccggcgc tcctccccca ctctggctgg
     8221 aacttgcgtc agtcatatca aggaggccct cgggttgggt gccagggaga gcaagctgct
     8281 tccagccgca tgaaatcacc tggctacttg caactagggg acaaaatcag catctggttt
     8341 cagagaaccg agagtatttt agaactcgag agttggagcc caaactcagc cgtgcagtgg
     8401 agaccacaga ggcaccaggg tgctggagaa caaagcaagt atcgaagcac cggctccttg
     8461 cagaaccagg cgtgctctca tctccaccca agtttaatgt gttgtacagt cagtaatacc
     8521 cacccccatc tatgcagaaa tattgcctag gactaccctc accctcaatc ttcctcataa
     8581 ttaagttcaa gaacagaatg agacggtagt ccagctacag aacaggaggc agtgggcaga
     8641 agagtaggag cacagacttt ggagtcagac ctggaatcga caccattcac tagtcatggg
     8701 actgtggaca agtttttgaa ccacactgag gatcagtttc ttctcctgcc aaaaagggaa
     8761 tactacctac tccgcaagac tgttgtgaga attcaagagc acagcttggt gttcaaattt
     8821 tatttccttc tcttccctag agcagcacat gatgttatgt ccaggaggcg taaaaagtag
     8881 aagggtttat ctagagtcct gaagaattgg tagggaaccg gagagatgca gattcttctt
     8941 tctcctggtt atggtatcag aggaaataca gacatatttt cttagcttca aacaaccaaa
     9001 aaagatggtg caagtaggag atgagaaatc taatttgaac accatttgca aacctaattt
     9061 tcaggcagaa tttgaaaaca acacaaaaca aaactccatt cttttattag aggattatct
     9121 acttagtaca attataagac actaatcttt ttgtgtcaca gtagagaata aataagattg
     9181 gcaattaacg gggtcatatt tgaatgtcct gactgctcac gtatggctgg gaaggcggag
     9241 cccgtgatct acgtgactag gacacatgga agtgttgccc tggctcaggt gaaacccacc
     9301 tttgtgtagt gtctagagcc tcacaggcag aaagggtgct tgtttcctga tgacgtgaga
     9361 aaatatggga aaatgctttg cacactgtga aatagtttac aaagcagggc aatactaatg
     9421 tacatattaa cccagtttag taacagcttt ggctatttta tttcgtcata tatataataa
     9481 tctgtaggga ctggttatgg aattaagtaa cttagaattc atgagttttg tattgcgatt
     9541 gtctgtgtaa attaccagct ttgactttcg tgttctttga gcatcacttt gtaactcttc
     9601 tctgtgcctt tctaatggat ccatatatca tgtcccgtca caagtggaac tgcaagaaga
     9661 cacctctgct cggggcagag gctgggtctt ccgatcgcat ctcccttctt tcttcagtga
     9721 gatcctcttc ttctggaagc tggtttcaca tggtggctta gatttttcca tctttgtatc
     9781 tagcaccatt tgaaatcagt gttttaggag taagaattgc agcacagcaa aaggccaacc
     9841 gcagaggagc tgctgctcgt gggatcagct tccctccttc tgccacctga gccggttcaa
     9901 gaaaaggaag aacttgagaa tcaaagtaca ctcttgagtg tgttgggttg tggaagggga
     9961 cagtgcaggg atggggtcgt gttcaataga aactcagagg cttgagcaga gccagaggtt
    10021 gtgattgtct ttctgttgac agggagcggc aacccctagc agtagcctgt tggtaaggcc
    10081 tttgagcaca cgcttgggca atgccgggtt gggtacttga ttgcaatagg caaggggagg
    10141 ggtgtggacc agaaggacta tctcatcaca tcagcactgt ccacctgctc ctagatgccg
    10201 tgaaacattc agctgcagtt gccgagcagc tgaaatcaga cttgccacct gcactgtcaa
    10261 ggtgccggac cccaccgagc accactggac ccatctctta cacaggctga ccgatttctc
    10321 ctggtgttca gagtctgttt ttgtctagca ccatttgaaa tcggttatga tgtaggggga
    10381 aaagcagcag cctcgaggcc tcatgccaag tctggtcagc aacagcctgg ggcttcctgg
    10441 aagatggatg cgcagagaga gggggaggaa ggttatgctt tttcctgcta gcttctttaa
    10501 ctacatctac aatactttat gcacgggtaa tagatcagtt aatggatttt tcagaagcaa
    10561 atcactaaaa tttatctgat gtcctcggtt tgccgaaatg tggtagtgat gtaaactata
    10621 aattggttgc tgttgaatta tctttcagtc atgcatcctg accttaataa atgctttact
    10681 gtacacaatt
//
LOCUS       XR_004351824           17128 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X18, misc_RNA.
ACCESSION   XR_004351824
VERSION     XR_004351824.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17128
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..17128
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..17128
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X18"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaagtgat actctccacg cctcctctcc
    11761 actgcaccca cctgcggcag tcccaccgtc ttccgtggac ctctcctgat taccttcaca
    11821 agaagcagcc ctcctcccat ccggccagac tcccatacgc ttcatgcctc ttttgtgcta
    11881 ctgtagatgt gctgtggttc ttcgtgtata agtcttatgt cacctattag attgtgagcc
    11941 ccaggaagct aggggaaaga agggaaacat gtacctgcgt ggtgctttct gtttgccagg
    12001 taccacatcc gtctggttca cggcggttat ttcatttatt cctcacctca accctgcgag
    12061 gagagtccca tggccggcta ggttcaccca agacaatggg gattttttgt agctgaaatt
    12121 gatggactaa caaacttcag ttttcctggt ctccttcctc tcgaaacagg aggcagagga
    12181 gcttttgcat caggaaaaca ccatggaaac gccatgagca ttggtggtgg cggagtgagg
    12241 gttaaacagt gagccttcct gggatccttt tgatgccagt gtgtcgggag cctggagatg
    12301 gagcgctcag ccgagtggcc aggacgttct gtcaacatga aagcagcaaa aacagtttgt
    12361 cggggctcag cgctgacccc gggctggtgt cattttcagg aagggcttgg cacaagaaag
    12421 accaccgcca ggcacgggat tgggggtgac gtcggataac tcagtaggcc cctatagacc
    12481 cttgaatttt agaatctgaa aagaaaatca gctgtttgtc ttttattaga tgagcttggc
    12541 aaacaggatc acttcttgaa ctcctctcac tggtccccaa caagagacat cttcccaggt
    12601 tcagaaaacc ctttgggatt tctcggttgt ggcttattgc cttggatgga gggcaggtcc
    12661 cttctagggg gcaggggtgg gcctggcagt cctagtgccc gttatgggga tatggagtcg
    12721 taggtttcct ctgctggcat cacgtgaaga cggtggatcc acatcacagg ccttgagctg
    12781 aagaccagct cttgggcagc ccacttcagc ctctcctttc cttattatct caaatcaaag
    12841 tcttatcttc tccccttcat cttcctcatt tctttcttag gcgcagtagt gggcctgaag
    12901 tccttgacct ttgcgtctgt gtgtgtgtca tcatggcggc tcagggttct agacttttct
    12961 tgaatctgca gcattgcgct ttgtgcgcgt gacgcccccc cccccccccg ctccgccccg
    13021 cccacccggc cccgccccac caggccttct tcggagcaag agagaacatg ggcctccatc
    13081 gccactgaac ctcagccaag ccgtcatccc cagcatctgg cctcccttct ctcctccccc
    13141 gctttcggcc agtgtctggg gtggaggagc aaacaacttg tgggaggaga tggagggaca
    13201 gcctggcctg gagctctctg cctcctttcc tcgtgtgcca tttttcagcc tcacgcttcc
    13261 tgtggatgga tgatgccagc actgacattt gtcgccgagc gcctcctctc cccaaggact
    13321 tccccgcgtg actcttttgg ggtctggaaa gagtggctct ggggccttgg gagccagagg
    13381 ggacaggggg acctggccca ggtcacagca gactgtgaga cgggcgaggg gtgggagctg
    13441 gccgaaccca cccaagcgca aaggcagccc cggccccttt gcgtcatgtc tttttcagcc
    13501 tgaggagaga gcaacttgac ctaaaaaaat tgtatatatg tgggtgttgg atcctttgtg
    13561 tctctttgtc cagaagctgt gcatgtgatg agagcccagg tctctgtact gtacagagaa
    13621 ctgttgtcct tcaggtttgt tttcagaaag atgtgatgga tgggccgtcc ttgatgagac
    13681 cgcgtgcccg ctgggactgg ccttcctcca ggatgctggg cccggcgtgg tgtttcttct
    13741 gtcagtggac gagaactcag aggagttcag ctccatgagt aggtgacaaa ctcctggaga
    13801 ctcagctgac gatggtgccg gtgtgcagaa gacagttgtc atcctgtggg ataagcgtgt
    13861 gcccgtttgc atttatttgg aacaaaaaaa ggagctgcct ggcagcctgg ctctctgcaa
    13921 ggtgctgttg agcccctggt ttgtgtggtt ctgtgaccac aagtgctgat ggatgtggcg
    13981 ccatcccagt cttgtcggtg aaccatcacc agcctgctta ttggaaacca ggcgcagcaa
    14041 ggaagctagg attcaacgcc ctccttccct gcctcccagc ccgcctccaa aagaatttaa
    14101 tctgctggac aacaaacaat actgttataa aactttgaaa acaagagggc gcggcctccc
    14161 tgacaaggag aagggcatgc cgggtaatgg gcgagggagc ctgccaggcc cgagatggag
    14221 ccaggcaaga gcccagttgg ctgggcacct gggtgcccgc ccctgcccag cccaccagcc
    14281 gtgccatccc cagtccagag gagaaggaac cgaaacaaaa gtgggggcag cggagctctt
    14341 gaaaagggga agttgtcctg agactggcag acagaggtcc tgataacaga atgaggctgg
    14401 catagccgtg aaggtacagc caccagcctg gccagctgca ggggaagcag gagagaaagg
    14461 tgctccaagc tggctttgga ctccagacct accctctgtc tgcccagcct cccacccccc
    14521 acctagggaa gtggaaccag gtcatgggca tgacccggtc catgtgctct gccaggagcc
    14581 ctgaaaccag cattcccagc ggcaggaaga tggatgatct gggctccact tccggcgctc
    14641 ctcccccact ctggctggaa cttgcgtcag tcatatcaag gaggccctcg ggttgggtgc
    14701 cagggagagc aagctgcttc cagccgcatg aaatcacctg gctacttgca actaggggac
    14761 aaaatcagca tctggtttca gagaaccgag agtattttag aactcgagag ttggagccca
    14821 aactcagccg tgcagtggag accacagagg caccagggtg ctggagaaca aagcaagtat
    14881 cgaagcaccg gctccttgca gaaccaggcg tgctctcatc tccacccaag tttaatgtgt
    14941 tgtacagtca gtaataccca cccccatcta tgcagaaata ttgcctagga ctaccctcac
    15001 cctcaatctt cctcataatt aagttcaaga acagaatgag acggtagtcc agctacagaa
    15061 caggaggcag tgggcagaag agtaggagca cagactttgg agtcagacct ggaatcgaca
    15121 ccattcacta gtcatgggac tgtggacaag tttttgaacc acactgagga tcagtttctt
    15181 ctcctgccaa aaagggaata ctacctactc cgcaagactg ttgtgagaat tcaagagcac
    15241 agcttggtgt tcaaatttta tttccttctc ttccctagag cagcacatga tgttatgtcc
    15301 aggaggcgta aaaagtagaa gggtttatct agagtcctga agaattggta gggaaccgga
    15361 gagatgcaga ttcttctttc tcctggttat ggtatcagag gaaatacaga catattttct
    15421 tagcttcaaa caaccaaaaa agatggtgca agtaggagat gagaaatcta atttgaacac
    15481 catttgcaaa cctaattttc aggcagaatt tgaaaacaac acaaaacaaa actccattct
    15541 tttattagag gattatctac ttagtacaat tataagacac taatcttttt gtgtcacagt
    15601 agagaataaa taagattggc aattaacggg gtcatatttg aatgtcctga ctgctcacgt
    15661 atggctggga aggcggagcc cgtgatctac gtgactagga cacatggaag tgttgccctg
    15721 gctcaggtga aacccacctt tgtgtagtgt ctagagcctc acaggcagaa agggtgcttg
    15781 tttcctgatg acgtgagaaa atatgggaaa atgctttgca cactgtgaaa tagtttacaa
    15841 agcagggcaa tactaatgta catattaacc cagtttagta acagctttgg ctattttatt
    15901 tcgtcatata tataataatc tgtagggact ggttatggaa ttaagtaact tagaattcat
    15961 gagttttgta ttgcgattgt ctgtgtaaat taccagcttt gactttcgtg ttctttgagc
    16021 atcactttgt aactcttctc tgtgcctttc taatggatcc atatatcatg tcccgtcaca
    16081 agtggaactg caagaagaca cctctgctcg gggcagaggc tgggtcttcc gatcgcatct
    16141 cccttctttc ttcagtgaga tcctcttctt ctggaagctg gtttcacatg gtggcttaga
    16201 tttttccatc tttgtatcta gcaccatttg aaatcagtgt tttaggagta agaattgcag
    16261 cacagcaaaa ggccaaccgc agaggagctg ctgctcgtgg gatcagcttc cctccttctg
    16321 ccacctgagc cggttcaaga aaaggaagaa cttgagaatc aaagtacact cttgagtgtg
    16381 ttgggttgtg gaaggggaca gtgcagggat ggggtcgtgt tcaatagaaa ctcagaggct
    16441 tgagcagagc cagaggttgt gattgtcttt ctgttgacag ggagcggcaa cccctagcag
    16501 tagcctgttg gtaaggcctt tgagcacacg cttgggcaat gccgggttgg gtacttgatt
    16561 gcaataggca aggggagggg tgtggaccag aaggactatc tcatcacatc agcactgtcc
    16621 acctgctcct agatgccgtg aaacattcag ctgcagttgc cgagcagctg aaatcagact
    16681 tgccacctgc actgtcaagg tgccggaccc caccgagcac cactggaccc atctcttaca
    16741 caggctgacc gatttctcct ggtgttcaga gtctgttttt gtctagcacc atttgaaatc
    16801 ggttatgatg tagggggaaa agcagcagcc tcgaggcctc atgccaagtc tggtcagcaa
    16861 cagcctgggg cttcctggaa gatggatgcg cagagagagg gggaggaagg ttatgctttt
    16921 tcctgctagc ttctttaact acatctacaa tactttatgc acgggtaata gatcagttaa
    16981 tggatttttc agaagcaaat cactaaaatt tatctgatgt cctcggtttg ccgaaatgtg
    17041 gtagtgatgt aaactataaa ttggttgctg ttgaattatc tttcagtcat gcatcctgac
    17101 cttaataaat gctttactgt acacaatt
//
LOCUS       XR_004351825           16865 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X19, misc_RNA.
ACCESSION   XR_004351825
VERSION     XR_004351825.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16865
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16865
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16865
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X19"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaaggtac cacatccgtc tggttcacgg
    11761 cggttatttc atttattcct cacctcaacc ctgcgaggag agtcccatgg ccggctaggt
    11821 tcacccaaga caatggggat tttttgtagc tgaaattgat ggactaacaa acttcagttt
    11881 tcctggtctc cttcctctcg aaacaggagg cagaggagct tttgcatcag gaaaacacca
    11941 tggaaacgcc atgagcattg gtggtggcgg agtgagggtt aaacagtgag ccttcctggg
    12001 atccttttga tgccagtgtg tcgggagcct ggagatggag cgctcagccg agtggccagg
    12061 acgttctgtc aacatgaaag cagcaaaaac agtttgtcgg ggctcagcgc tgaccccggg
    12121 ctggtgtcat tttcaggaag ggcttggcac aagaaagacc accgccaggc acgggattgg
    12181 gggtgacgtc ggataactca gtaggcccct atagaccctt gaattttaga atctgaaaag
    12241 aaaatcagct gtttgtcttt tattagatga gcttggcaaa caggatcact tcttgaactc
    12301 ctctcactgg tccccaacaa gagacatctt cccaggttca gaaaaccctt tgggatttct
    12361 cggttgtggc ttattgcctt ggatggaggg caggtccctt ctagggggca ggggtgggcc
    12421 tggcagtcct agtgcccgtt atggggatat ggagtcgtag gtttcctctg ctggcatcac
    12481 gtgaagacgg tggatccaca tcacaggcct tgagctgaag accagctctt gggcagccca
    12541 cttcagcctc tcctttcctt attatctcaa atcaaagtct tatcttctcc ccttcatctt
    12601 cctcatttct ttcttaggcg cagtagtggg cctgaagtcc ttgacctttg cgtctgtgtg
    12661 tgtgtcatca tggcggctca gggttctaga cttttcttga atctgcagca ttgcgctttg
    12721 tgcgcgtgac gccccccccc ccccccgctc cgccccgccc acccggcccc gccccaccag
    12781 gccttcttcg gagcaagaga gaacatgggc ctccatcgcc actgaacctc agccaagccg
    12841 tcatccccag catctggcct cccttctctc ctcccccgct ttcggccagt gtctggggtg
    12901 gaggagcaaa caacttgtgg gaggagatgg agggacagcc tggcctggag ctctctgcct
    12961 cctttcctcg tgtgccattt ttcagcctca cgcttcctgt ggatggatga tgccagcact
    13021 gacatttgtc gccgagcgcc tcctctcccc aaggacttcc ccgcgtgact cttttggggt
    13081 ctggaaagag tggctctggg gccttgggag ccagagggga cagggggacc tggcccaggt
    13141 cacagcagac tgtgagacgg gcgaggggtg ggagctggcc gaacccaccc aagcgcaaag
    13201 gcagccccgg cccctttgcg tcatgtcttt ttcagcctga ggagagagca acttgaccta
    13261 aaaaaattgt atatatgtgg gtgttggatc ctttgtgtct ctttgtccag aagctgtgca
    13321 tgtgatgaga gcccaggtct ctgtactgta cagagaactg ttgtccttca ggtttgtttt
    13381 cagaaagatg tgatggatgg gccgtccttg atgagaccgc gtgcccgctg ggactggcct
    13441 tcctccagga tgctgggccc ggcgtggtgt ttcttctgtc agtggacgag aactcagagg
    13501 agttcagctc catgagtagg tgacaaactc ctggagactc agctgacgat ggtgccggtg
    13561 tgcagaagac agttgtcatc ctgtgggata agcgtgtgcc cgtttgcatt tatttggaac
    13621 aaaaaaagga gctgcctggc agcctggctc tctgcaaggt gctgttgagc ccctggtttg
    13681 tgtggttctg tgaccacaag tgctgatgga tgtggcgcca tcccagtctt gtcggtgaac
    13741 catcaccagc ctgcttattg gaaaccaggc gcagcaagga agctaggatt caacgccctc
    13801 cttccctgcc tcccagcccg cctccaaaag aatttaatct gctggacaac aaacaatact
    13861 gttataaaac tttgaaaaca agagggcgcg gcctccctga caaggagaag ggcatgccgg
    13921 gtaatgggcg agggagcctg ccaggcccga gatggagcca ggcaagagcc cagttggctg
    13981 ggcacctggg tgcccgcccc tgcccagccc accagccgtg ccatccccag tccagaggag
    14041 aaggaaccga aacaaaagtg ggggcagcgg agctcttgaa aaggggaagt tgtcctgaga
    14101 ctggcagaca gaggtcctga taacagaatg aggctggcat agccgtgaag gtacagccac
    14161 cagcctggcc agctgcaggg gaagcaggag agaaaggtgc tccaagctgg ctttggactc
    14221 cagacctacc ctctgtctgc ccagcctccc accccccacc tagggaagtg gaaccaggtc
    14281 atgggcatga cccggtccat gtgctctgcc aggagccctg aaaccagcat tcccagcggc
    14341 aggaagatgg atgatctggg ctccacttcc ggcgctcctc ccccactctg gctggaactt
    14401 gcgtcagtca tatcaaggag gccctcgggt tgggtgccag ggagagcaag ctgcttccag
    14461 ccgcatgaaa tcacctggct acttgcaact aggggacaaa atcagcatct ggtttcagag
    14521 aaccgagagt attttagaac tcgagagttg gagcccaaac tcagccgtgc agtggagacc
    14581 acagaggcac cagggtgctg gagaacaaag caagtatcga agcaccggct ccttgcagaa
    14641 ccaggcgtgc tctcatctcc acccaagttt aatgtgttgt acagtcagta atacccaccc
    14701 ccatctatgc agaaatattg cctaggacta ccctcaccct caatcttcct cataattaag
    14761 ttcaagaaca gaatgagacg gtagtccagc tacagaacag gaggcagtgg gcagaagagt
    14821 aggagcacag actttggagt cagacctgga atcgacacca ttcactagtc atgggactgt
    14881 ggacaagttt ttgaaccaca ctgaggatca gtttcttctc ctgccaaaaa gggaatacta
    14941 cctactccgc aagactgttg tgagaattca agagcacagc ttggtgttca aattttattt
    15001 ccttctcttc cctagagcag cacatgatgt tatgtccagg aggcgtaaaa agtagaaggg
    15061 tttatctaga gtcctgaaga attggtaggg aaccggagag atgcagattc ttctttctcc
    15121 tggttatggt atcagaggaa atacagacat attttcttag cttcaaacaa ccaaaaaaga
    15181 tggtgcaagt aggagatgag aaatctaatt tgaacaccat ttgcaaacct aattttcagg
    15241 cagaatttga aaacaacaca aaacaaaact ccattctttt attagaggat tatctactta
    15301 gtacaattat aagacactaa tctttttgtg tcacagtaga gaataaataa gattggcaat
    15361 taacggggtc atatttgaat gtcctgactg ctcacgtatg gctgggaagg cggagcccgt
    15421 gatctacgtg actaggacac atggaagtgt tgccctggct caggtgaaac ccacctttgt
    15481 gtagtgtcta gagcctcaca ggcagaaagg gtgcttgttt cctgatgacg tgagaaaata
    15541 tgggaaaatg ctttgcacac tgtgaaatag tttacaaagc agggcaatac taatgtacat
    15601 attaacccag tttagtaaca gctttggcta ttttatttcg tcatatatat aataatctgt
    15661 agggactggt tatggaatta agtaacttag aattcatgag ttttgtattg cgattgtctg
    15721 tgtaaattac cagctttgac tttcgtgttc tttgagcatc actttgtaac tcttctctgt
    15781 gcctttctaa tggatccata tatcatgtcc cgtcacaagt ggaactgcaa gaagacacct
    15841 ctgctcgggg cagaggctgg gtcttccgat cgcatctccc ttctttcttc agtgagatcc
    15901 tcttcttctg gaagctggtt tcacatggtg gcttagattt ttccatcttt gtatctagca
    15961 ccatttgaaa tcagtgtttt aggagtaaga attgcagcac agcaaaaggc caaccgcaga
    16021 ggagctgctg ctcgtgggat cagcttccct ccttctgcca cctgagccgg ttcaagaaaa
    16081 ggaagaactt gagaatcaaa gtacactctt gagtgtgttg ggttgtggaa ggggacagtg
    16141 cagggatggg gtcgtgttca atagaaactc agaggcttga gcagagccag aggttgtgat
    16201 tgtctttctg ttgacaggga gcggcaaccc ctagcagtag cctgttggta aggcctttga
    16261 gcacacgctt gggcaatgcc gggttgggta cttgattgca ataggcaagg ggaggggtgt
    16321 ggaccagaag gactatctca tcacatcagc actgtccacc tgctcctaga tgccgtgaaa
    16381 cattcagctg cagttgccga gcagctgaaa tcagacttgc cacctgcact gtcaaggtgc
    16441 cggaccccac cgagcaccac tggacccatc tcttacacag gctgaccgat ttctcctggt
    16501 gttcagagtc tgtttttgtc tagcaccatt tgaaatcggt tatgatgtag ggggaaaagc
    16561 agcagcctcg aggcctcatg ccaagtctgg tcagcaacag cctggggctt cctggaagat
    16621 ggatgcgcag agagaggggg aggaaggtta tgctttttcc tgctagcttc tttaactaca
    16681 tctacaatac tttatgcacg ggtaatagat cagttaatgg atttttcaga agcaaatcac
    16741 taaaatttat ctgatgtcct cggtttgccg aaatgtggta gtgatgtaaa ctataaattg
    16801 gttgctgttg aattatcttt cagtcatgca tcctgacctt aataaatgct ttactgtaca
    16861 caatt
//
LOCUS       XR_004351827           16400 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X20, misc_RNA.
ACCESSION   XR_004351827
VERSION     XR_004351827.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16400
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16400
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16400
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X20"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggtgggtg gaccaatggc aggagatttg cattgacgtc ccaggctgtc cagagctgag
    11221 cccattatgg gaaggacctg ccttctggaa gctgctgctc cccggtgctt ggaaaggtac
    11281 cacatccgtc tggttcacgg cggttatttc atttattcct cacctcaacc ctgcgaggag
    11341 agtcccatgg ccggttcacc caagacaatg gggatttttt gtagctgaaa ttgatggact
    11401 aacaaacttc agttttcctg gtctccttcc tctcgaaaca ggaggcagag gagcttttgc
    11461 atcaggaaaa caccatggaa acgccatgag cattggtggt ggcggagtga gggttaaaca
    11521 gtgagccttc ctgggatcct tttgatgcca gtgtgtcggg agcctggaga tggagcgctc
    11581 agccgagtgg ccaggacgtt ctgtcaacat gaaagcagca aaaacagttt gtcggggctc
    11641 agcgctgacc ccgggctggt gtcattttca ggaagggctt ggcacaagaa agaccaccgc
    11701 caggcacggg attgggggtg acgtcggata actcagtagg cccctataga cccttgaatt
    11761 ttagaatctg aaaagaaaat cagctgtttg tcttttatta gatgagcttg gcaaacagga
    11821 tcacttcttg aactcctctc actggtcccc aacaagagac atcttcccag gttcagaaaa
    11881 ccctttggga tttctcggtt gtggcttatt gccttggatg gagggcaggt cccttctagg
    11941 gggcaggggt gggcctggca gtcctagtgc ccgttatggg gatatggagt cgtaggtttc
    12001 ctctgctggc atcacgtgaa gacggtggat ccacatcaca ggccttgagc tgaagaccag
    12061 ctcttgggca gcccacttca gcctctcctt tccttattat ctcaaatcaa agtcttatct
    12121 tctccccttc atcttcctca tttctttctt aggcgcagta gtgggcctga agtccttgac
    12181 ctttgcgtct gtgtgtgtgt catcatggcg gctcagggtt ctagactttt cttgaatctg
    12241 cagcattgcg ctttgtgcgc gtgacgcccc cccccccccc cgctccgccc cgcccacccg
    12301 gccccgcccc accaggcctt cttcggagca agagagaaca tgggcctcca tcgccactga
    12361 acctcagcca agccgtcatc cccagcatct ggcctccctt ctctcctccc ccgctttcgg
    12421 ccagtgtctg gggtggagga gcaaacaact tgtgggagga gatggaggga cagcctggcc
    12481 tggagctctc tgcctccttt cctcgtgtgc catttttcag cctcacgctt cctgtggatg
    12541 gatgatgcca gcactgacat ttgtcgccga gcgcctcctc tccccaagga cttccccgcg
    12601 tgactctttt ggggtctgga aagagtggct ctggggcctt gggagccaga ggggacaggg
    12661 ggacctggcc caggtcacag cagactgtga gacgggcgag gggtgggagc tggccgaacc
    12721 cacccaagcg caaaggcagc cccggcccct ttgcgtcatg tctttttcag cctgaggaga
    12781 gagcaacttg acctaaaaaa attgtatata tgtgggtgtt ggatcctttg tgtctctttg
    12841 tccagaagct gtgcatgtga tgagagccca ggtctctgta ctgtacagag aactgttgtc
    12901 cttcaggttt gttttcagaa agatgtgatg gatgggccgt ccttgatgag accgcgtgcc
    12961 cgctgggact ggccttcctc caggatgctg ggcccggcgt ggtgtttctt ctgtcagtgg
    13021 acgagaactc agaggagttc agctccatga gtaggtgaca aactcctgga gactcagctg
    13081 acgatggtgc cggtgtgcag aagacagttg tcatcctgtg ggataagcgt gtgcccgttt
    13141 gcatttattt ggaacaaaaa aaggagctgc ctggcagcct ggctctctgc aaggtgctgt
    13201 tgagcccctg gtttgtgtgg ttctgtgacc acaagtgctg atggatgtgg cgccatccca
    13261 gtcttgtcgg tgaaccatca ccagcctgct tattggaaac caggcgcagc aaggaagcta
    13321 ggattcaacg ccctccttcc ctgcctccca gcccgcctcc aaaagaattt aatctgctgg
    13381 acaacaaaca atactgttat aaaactttga aaacaagagg gcgcggcctc cctgacaagg
    13441 agaagggcat gccgggtaat gggcgaggga gcctgccagg cccgagatgg agccaggcaa
    13501 gagcccagtt ggctgggcac ctgggtgccc gcccctgccc agcccaccag ccgtgccatc
    13561 cccagtccag aggagaagga accgaaacaa aagtgggggc agcggagctc ttgaaaaggg
    13621 gaagttgtcc tgagactggc agacagaggt cctgataaca gaatgaggct ggcatagccg
    13681 tgaaggtaca gccaccagcc tggccagctg caggggaagc aggagagaaa ggtgctccaa
    13741 gctggctttg gactccagac ctaccctctg tctgcccagc ctcccacccc ccacctaggg
    13801 aagtggaacc aggtcatggg catgacccgg tccatgtgct ctgccaggag ccctgaaacc
    13861 agcattccca gcggcaggaa gatggatgat ctgggctcca cttccggcgc tcctccccca
    13921 ctctggctgg aacttgcgtc agtcatatca aggaggccct cgggttgggt gccagggaga
    13981 gcaagctgct tccagccgca tgaaatcacc tggctacttg caactagggg acaaaatcag
    14041 catctggttt cagagaaccg agagtatttt agaactcgag agttggagcc caaactcagc
    14101 cgtgcagtgg agaccacaga ggcaccaggg tgctggagaa caaagcaagt atcgaagcac
    14161 cggctccttg cagaaccagg cgtgctctca tctccaccca agtttaatgt gttgtacagt
    14221 cagtaatacc cacccccatc tatgcagaaa tattgcctag gactaccctc accctcaatc
    14281 ttcctcataa ttaagttcaa gaacagaatg agacggtagt ccagctacag aacaggaggc
    14341 agtgggcaga agagtaggag cacagacttt ggagtcagac ctggaatcga caccattcac
    14401 tagtcatggg actgtggaca agtttttgaa ccacactgag gatcagtttc ttctcctgcc
    14461 aaaaagggaa tactacctac tccgcaagac tgttgtgaga attcaagagc acagcttggt
    14521 gttcaaattt tatttccttc tcttccctag agcagcacat gatgttatgt ccaggaggcg
    14581 taaaaagtag aagggtttat ctagagtcct gaagaattgg tagggaaccg gagagatgca
    14641 gattcttctt tctcctggtt atggtatcag aggaaataca gacatatttt cttagcttca
    14701 aacaaccaaa aaagatggtg caagtaggag atgagaaatc taatttgaac accatttgca
    14761 aacctaattt tcaggcagaa tttgaaaaca acacaaaaca aaactccatt cttttattag
    14821 aggattatct acttagtaca attataagac actaatcttt ttgtgtcaca gtagagaata
    14881 aataagattg gcaattaacg gggtcatatt tgaatgtcct gactgctcac gtatggctgg
    14941 gaaggcggag cccgtgatct acgtgactag gacacatgga agtgttgccc tggctcaggt
    15001 gaaacccacc tttgtgtagt gtctagagcc tcacaggcag aaagggtgct tgtttcctga
    15061 tgacgtgaga aaatatggga aaatgctttg cacactgtga aatagtttac aaagcagggc
    15121 aatactaatg tacatattaa cccagtttag taacagcttt ggctatttta tttcgtcata
    15181 tatataataa tctgtaggga ctggttatgg aattaagtaa cttagaattc atgagttttg
    15241 tattgcgatt gtctgtgtaa attaccagct ttgactttcg tgttctttga gcatcacttt
    15301 gtaactcttc tctgtgcctt tctaatggat ccatatatca tgtcccgtca caagtggaac
    15361 tgcaagaaga cacctctgct cggggcagag gctgggtctt ccgatcgcat ctcccttctt
    15421 tcttcagtga gatcctcttc ttctggaagc tggtttcaca tggtggctta gatttttcca
    15481 tctttgtatc tagcaccatt tgaaatcagt gttttaggag taagaattgc agcacagcaa
    15541 aaggccaacc gcagaggagc tgctgctcgt gggatcagct tccctccttc tgccacctga
    15601 gccggttcaa gaaaaggaag aacttgagaa tcaaagtaca ctcttgagtg tgttgggttg
    15661 tggaagggga cagtgcaggg atggggtcgt gttcaataga aactcagagg cttgagcaga
    15721 gccagaggtt gtgattgtct ttctgttgac agggagcggc aacccctagc agtagcctgt
    15781 tggtaaggcc tttgagcaca cgcttgggca atgccgggtt gggtacttga ttgcaatagg
    15841 caaggggagg ggtgtggacc agaaggacta tctcatcaca tcagcactgt ccacctgctc
    15901 ctagatgccg tgaaacattc agctgcagtt gccgagcagc tgaaatcaga cttgccacct
    15961 gcactgtcaa ggtgccggac cccaccgagc accactggac ccatctctta cacaggctga
    16021 ccgatttctc ctggtgttca gagtctgttt ttgtctagca ccatttgaaa tcggttatga
    16081 tgtaggggga aaagcagcag cctcgaggcc tcatgccaag tctggtcagc aacagcctgg
    16141 ggcttcctgg aagatggatg cgcagagaga gggggaggaa ggttatgctt tttcctgcta
    16201 gcttctttaa ctacatctac aatactttat gcacgggtaa tagatcagtt aatggatttt
    16261 tcagaagcaa atcactaaaa tttatctgat gtcctcggtt tgccgaaatg tggtagtgat
    16321 gtaaactata aattggttgc tgttgaatta tctttcagtc atgcatcctg accttaataa
    16381 atgctttact gtacacaatt
//
LOCUS       XR_004351828           16959 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X21, misc_RNA.
ACCESSION   XR_004351828
VERSION     XR_004351828.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16959
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16959
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16959
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X21"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaaggtac cacatccgtc tggttcacgg
    11761 cggttatttc atttattcct cacctcaacc ctgcgaggag agtcccatgg ccggttcacc
    11821 caagacaatg gggatttttt gtagctgaaa ttgatggact aacaaacttc agttttcctg
    11881 gtctccttcc tctcgaaaca ggaggcagag gtgagatagg ttgtagcctc ttcagagcag
    11941 gataagttcc ggaatccaga gatcagtgga gaccgtagaa gcagagacat ggcgcttggg
    12001 cagacctagg agcttttgca tcaggaaaac accatggaaa cgccatgagc attggtggtg
    12061 gcggagtgag ggttaaacag tgagccttcc tgggatcctt ttgatgccag tgtgtcggga
    12121 gcctggagat ggagcgctca gccgagtggc caggacgttc tgtcaacatg aaagcagcaa
    12181 aaacagtttg tcggggctca gcgctgaccc cgggctggtg tcattttcag gaagggcttg
    12241 gcacaagaaa gaccaccgcc aggcacggga ttgggggtga cgtcggataa ctcagtaggc
    12301 ccctatagac ccttgaattt tagaatctga aaagaaaatc agctgtttgt cttttattag
    12361 atgagcttgg caaacaggat cacttcttga actcctctca ctggtcccca acaagagaca
    12421 tcttcccagg ttcagaaaac cctttgggat ttctcggttg tggcttattg ccttggatgg
    12481 agggcaggtc ccttctaggg ggcaggggtg ggcctggcag tcctagtgcc cgttatgggg
    12541 atatggagtc gtaggtttcc tctgctggca tcacgtgaag acggtggatc cacatcacag
    12601 gccttgagct gaagaccagc tcttgggcag cccacttcag cctctccttt ccttattatc
    12661 tcaaatcaaa gtcttatctt ctccccttca tcttcctcat ttctttctta ggcgcagtag
    12721 tgggcctgaa gtccttgacc tttgcgtctg tgtgtgtgtc atcatggcgg ctcagggttc
    12781 tagacttttc ttgaatctgc agcattgcgc tttgtgcgcg tgacgccccc cccccccccc
    12841 gctccgcccc gcccacccgg ccccgcccca ccaggccttc ttcggagcaa gagagaacat
    12901 gggcctccat cgccactgaa cctcagccaa gccgtcatcc ccagcatctg gcctcccttc
    12961 tctcctcccc cgctttcggc cagtgtctgg ggtggaggag caaacaactt gtgggaggag
    13021 atggagggac agcctggcct ggagctctct gcctcctttc ctcgtgtgcc atttttcagc
    13081 ctcacgcttc ctgtggatgg atgatgccag cactgacatt tgtcgccgag cgcctcctct
    13141 ccccaaggac ttccccgcgt gactcttttg gggtctggaa agagtggctc tggggccttg
    13201 ggagccagag gggacagggg gacctggccc aggtcacagc agactgtgag acgggcgagg
    13261 ggtgggagct ggccgaaccc acccaagcgc aaaggcagcc ccggcccctt tgcgtcatgt
    13321 ctttttcagc ctgaggagag agcaacttga cctaaaaaaa ttgtatatat gtgggtgttg
    13381 gatcctttgt gtctctttgt ccagaagctg tgcatgtgat gagagcccag gtctctgtac
    13441 tgtacagaga actgttgtcc ttcaggtttg ttttcagaaa gatgtgatgg atgggccgtc
    13501 cttgatgaga ccgcgtgccc gctgggactg gccttcctcc aggatgctgg gcccggcgtg
    13561 gtgtttcttc tgtcagtgga cgagaactca gaggagttca gctccatgag taggtgacaa
    13621 actcctggag actcagctga cgatggtgcc ggtgtgcaga agacagttgt catcctgtgg
    13681 gataagcgtg tgcccgtttg catttatttg gaacaaaaaa aggagctgcc tggcagcctg
    13741 gctctctgca aggtgctgtt gagcccctgg tttgtgtggt tctgtgacca caagtgctga
    13801 tggatgtggc gccatcccag tcttgtcggt gaaccatcac cagcctgctt attggaaacc
    13861 aggcgcagca aggaagctag gattcaacgc cctccttccc tgcctcccag cccgcctcca
    13921 aaagaattta atctgctgga caacaaacaa tactgttata aaactttgaa aacaagaggg
    13981 cgcggcctcc ctgacaagga gaagggcatg ccgggtaatg ggcgagggag cctgccaggc
    14041 ccgagatgga gccaggcaag agcccagttg gctgggcacc tgggtgcccg cccctgccca
    14101 gcccaccagc cgtgccatcc ccagtccaga ggagaaggaa ccgaaacaaa agtgggggca
    14161 gcggagctct tgaaaagggg aagttgtcct gagactggca gacagaggtc ctgataacag
    14221 aatgaggctg gcatagccgt gaaggtacag ccaccagcct ggccagctgc aggggaagca
    14281 ggagagaaag gtgctccaag ctggctttgg actccagacc taccctctgt ctgcccagcc
    14341 tcccaccccc cacctaggga agtggaacca ggtcatgggc atgacccggt ccatgtgctc
    14401 tgccaggagc cctgaaacca gcattcccag cggcaggaag atggatgatc tgggctccac
    14461 ttccggcgct cctcccccac tctggctgga acttgcgtca gtcatatcaa ggaggccctc
    14521 gggttgggtg ccagggagag caagctgctt ccagccgcat gaaatcacct ggctacttgc
    14581 aactagggga caaaatcagc atctggtttc agagaaccga gagtatttta gaactcgaga
    14641 gttggagccc aaactcagcc gtgcagtgga gaccacagag gcaccagggt gctggagaac
    14701 aaagcaagta tcgaagcacc ggctccttgc agaaccaggc gtgctctcat ctccacccaa
    14761 gtttaatgtg ttgtacagtc agtaataccc acccccatct atgcagaaat attgcctagg
    14821 actaccctca ccctcaatct tcctcataat taagttcaag aacagaatga gacggtagtc
    14881 cagctacaga acaggaggca gtgggcagaa gagtaggagc acagactttg gagtcagacc
    14941 tggaatcgac accattcact agtcatggga ctgtggacaa gtttttgaac cacactgagg
    15001 atcagtttct tctcctgcca aaaagggaat actacctact ccgcaagact gttgtgagaa
    15061 ttcaagagca cagcttggtg ttcaaatttt atttccttct cttccctaga gcagcacatg
    15121 atgttatgtc caggaggcgt aaaaagtaga agggtttatc tagagtcctg aagaattggt
    15181 agggaaccgg agagatgcag attcttcttt ctcctggtta tggtatcaga ggaaatacag
    15241 acatattttc ttagcttcaa acaaccaaaa aagatggtgc aagtaggaga tgagaaatct
    15301 aatttgaaca ccatttgcaa acctaatttt caggcagaat ttgaaaacaa cacaaaacaa
    15361 aactccattc ttttattaga ggattatcta cttagtacaa ttataagaca ctaatctttt
    15421 tgtgtcacag tagagaataa ataagattgg caattaacgg ggtcatattt gaatgtcctg
    15481 actgctcacg tatggctggg aaggcggagc ccgtgatcta cgtgactagg acacatggaa
    15541 gtgttgccct ggctcaggtg aaacccacct ttgtgtagtg tctagagcct cacaggcaga
    15601 aagggtgctt gtttcctgat gacgtgagaa aatatgggaa aatgctttgc acactgtgaa
    15661 atagtttaca aagcagggca atactaatgt acatattaac ccagtttagt aacagctttg
    15721 gctattttat ttcgtcatat atataataat ctgtagggac tggttatgga attaagtaac
    15781 ttagaattca tgagttttgt attgcgattg tctgtgtaaa ttaccagctt tgactttcgt
    15841 gttctttgag catcactttg taactcttct ctgtgccttt ctaatggatc catatatcat
    15901 gtcccgtcac aagtggaact gcaagaagac acctctgctc ggggcagagg ctgggtcttc
    15961 cgatcgcatc tcccttcttt cttcagtgag atcctcttct tctggaagct ggtttcacat
    16021 ggtggcttag atttttccat ctttgtatct agcaccattt gaaatcagtg ttttaggagt
    16081 aagaattgca gcacagcaaa aggccaaccg cagaggagct gctgctcgtg ggatcagctt
    16141 ccctccttct gccacctgag ccggttcaag aaaaggaaga acttgagaat caaagtacac
    16201 tcttgagtgt gttgggttgt ggaaggggac agtgcaggga tggggtcgtg ttcaatagaa
    16261 actcagaggc ttgagcagag ccagaggttg tgattgtctt tctgttgaca gggagcggca
    16321 acccctagca gtagcctgtt ggtaaggcct ttgagcacac gcttgggcaa tgccgggttg
    16381 ggtacttgat tgcaataggc aaggggaggg gtgtggacca gaaggactat ctcatcacat
    16441 cagcactgtc cacctgctcc tagatgccgt gaaacattca gctgcagttg ccgagcagct
    16501 gaaatcagac ttgccacctg cactgtcaag gtgccggacc ccaccgagca ccactggacc
    16561 catctcttac acaggctgac cgatttctcc tggtgttcag agtctgtttt tgtctagcac
    16621 catttgaaat cggttatgat gtagggggaa aagcagcagc ctcgaggcct catgccaagt
    16681 ctggtcagca acagcctggg gcttcctgga agatggatgc gcagagagag ggggaggaag
    16741 gttatgcttt ttcctgctag cttctttaac tacatctaca atactttatg cacgggtaat
    16801 agatcagtta atggattttt cagaagcaaa tcactaaaat ttatctgatg tcctcggttt
    16861 gccgaaatgt ggtagtgatg taaactataa attggttgct gttgaattat ctttcagtca
    16921 tgcatcctga ccttaataaa tgctttactg tacacaatt
//
LOCUS       XR_004351829           16783 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X22, misc_RNA.
ACCESSION   XR_004351829
VERSION     XR_004351829.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16783
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16783
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16783
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X22"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggagat ttgcattgac
    11581 gtcccaggct gtccagagct gagcccatta tgggaaggac ctgccttctg gaagctgctg
    11641 ctccccggtg cttggaaagg taccacatcc gtctggttca cggcggttat ttcatttatt
    11701 cctcacctca accctgcgag gagagtccca tggccggttc acccaagaca atggggattt
    11761 tttgtagctg aaattgatgg actaacaaac ttcagttttc ctggtctcct tcctctcgaa
    11821 acaggaggca gaggagcttt tgcatcagga aaacaccatg gaaacgccat gagcattggt
    11881 ggtggcggag tgagggttaa acagtgagcc ttcctgggat ccttttgatg ccagtgtgtc
    11941 gggagcctgg agatggagcg ctcagccgag tggccaggac gttctgtcaa catgaaagca
    12001 gcaaaaacag tttgtcgggg ctcagcgctg accccgggct ggtgtcattt tcaggaaggg
    12061 cttggcacaa gaaagaccac cgccaggcac gggattgggg gtgacgtcgg ataactcagt
    12121 aggcccctat agacccttga attttagaat ctgaaaagaa aatcagctgt ttgtctttta
    12181 ttagatgagc ttggcaaaca ggatcacttc ttgaactcct ctcactggtc cccaacaaga
    12241 gacatcttcc caggttcaga aaaccctttg ggatttctcg gttgtggctt attgccttgg
    12301 atggagggca ggtcccttct agggggcagg ggtgggcctg gcagtcctag tgcccgttat
    12361 ggggatatgg agtcgtaggt ttcctctgct ggcatcacgt gaagacggtg gatccacatc
    12421 acaggccttg agctgaagac cagctcttgg gcagcccact tcagcctctc ctttccttat
    12481 tatctcaaat caaagtctta tcttctcccc ttcatcttcc tcatttcttt cttaggcgca
    12541 gtagtgggcc tgaagtcctt gacctttgcg tctgtgtgtg tgtcatcatg gcggctcagg
    12601 gttctagact tttcttgaat ctgcagcatt gcgctttgtg cgcgtgacgc cccccccccc
    12661 ccccgctccg ccccgcccac ccggccccgc cccaccaggc cttcttcgga gcaagagaga
    12721 acatgggcct ccatcgccac tgaacctcag ccaagccgtc atccccagca tctggcctcc
    12781 cttctctcct cccccgcttt cggccagtgt ctggggtgga ggagcaaaca acttgtggga
    12841 ggagatggag ggacagcctg gcctggagct ctctgcctcc tttcctcgtg tgccattttt
    12901 cagcctcacg cttcctgtgg atggatgatg ccagcactga catttgtcgc cgagcgcctc
    12961 ctctccccaa ggacttcccc gcgtgactct tttggggtct ggaaagagtg gctctggggc
    13021 cttgggagcc agaggggaca gggggacctg gcccaggtca cagcagactg tgagacgggc
    13081 gaggggtggg agctggccga acccacccaa gcgcaaaggc agccccggcc cctttgcgtc
    13141 atgtcttttt cagcctgagg agagagcaac ttgacctaaa aaaattgtat atatgtgggt
    13201 gttggatcct ttgtgtctct ttgtccagaa gctgtgcatg tgatgagagc ccaggtctct
    13261 gtactgtaca gagaactgtt gtccttcagg tttgttttca gaaagatgtg atggatgggc
    13321 cgtccttgat gagaccgcgt gcccgctggg actggccttc ctccaggatg ctgggcccgg
    13381 cgtggtgttt cttctgtcag tggacgagaa ctcagaggag ttcagctcca tgagtaggtg
    13441 acaaactcct ggagactcag ctgacgatgg tgccggtgtg cagaagacag ttgtcatcct
    13501 gtgggataag cgtgtgcccg tttgcattta tttggaacaa aaaaaggagc tgcctggcag
    13561 cctggctctc tgcaaggtgc tgttgagccc ctggtttgtg tggttctgtg accacaagtg
    13621 ctgatggatg tggcgccatc ccagtcttgt cggtgaacca tcaccagcct gcttattgga
    13681 aaccaggcgc agcaaggaag ctaggattca acgccctcct tccctgcctc ccagcccgcc
    13741 tccaaaagaa tttaatctgc tggacaacaa acaatactgt tataaaactt tgaaaacaag
    13801 agggcgcggc ctccctgaca aggagaaggg catgccgggt aatgggcgag ggagcctgcc
    13861 aggcccgaga tggagccagg caagagccca gttggctggg cacctgggtg cccgcccctg
    13921 cccagcccac cagccgtgcc atccccagtc cagaggagaa ggaaccgaaa caaaagtggg
    13981 ggcagcggag ctcttgaaaa ggggaagttg tcctgagact ggcagacaga ggtcctgata
    14041 acagaatgag gctggcatag ccgtgaaggt acagccacca gcctggccag ctgcagggga
    14101 agcaggagag aaaggtgctc caagctggct ttggactcca gacctaccct ctgtctgccc
    14161 agcctcccac cccccaccta gggaagtgga accaggtcat gggcatgacc cggtccatgt
    14221 gctctgccag gagccctgaa accagcattc ccagcggcag gaagatggat gatctgggct
    14281 ccacttccgg cgctcctccc ccactctggc tggaacttgc gtcagtcata tcaaggaggc
    14341 cctcgggttg ggtgccaggg agagcaagct gcttccagcc gcatgaaatc acctggctac
    14401 ttgcaactag gggacaaaat cagcatctgg tttcagagaa ccgagagtat tttagaactc
    14461 gagagttgga gcccaaactc agccgtgcag tggagaccac agaggcacca gggtgctgga
    14521 gaacaaagca agtatcgaag caccggctcc ttgcagaacc aggcgtgctc tcatctccac
    14581 ccaagtttaa tgtgttgtac agtcagtaat acccaccccc atctatgcag aaatattgcc
    14641 taggactacc ctcaccctca atcttcctca taattaagtt caagaacaga atgagacggt
    14701 agtccagcta cagaacagga ggcagtgggc agaagagtag gagcacagac tttggagtca
    14761 gacctggaat cgacaccatt cactagtcat gggactgtgg acaagttttt gaaccacact
    14821 gaggatcagt ttcttctcct gccaaaaagg gaatactacc tactccgcaa gactgttgtg
    14881 agaattcaag agcacagctt ggtgttcaaa ttttatttcc ttctcttccc tagagcagca
    14941 catgatgtta tgtccaggag gcgtaaaaag tagaagggtt tatctagagt cctgaagaat
    15001 tggtagggaa ccggagagat gcagattctt ctttctcctg gttatggtat cagaggaaat
    15061 acagacatat tttcttagct tcaaacaacc aaaaaagatg gtgcaagtag gagatgagaa
    15121 atctaatttg aacaccattt gcaaacctaa ttttcaggca gaatttgaaa acaacacaaa
    15181 acaaaactcc attcttttat tagaggatta tctacttagt acaattataa gacactaatc
    15241 tttttgtgtc acagtagaga ataaataaga ttggcaatta acggggtcat atttgaatgt
    15301 cctgactgct cacgtatggc tgggaaggcg gagcccgtga tctacgtgac taggacacat
    15361 ggaagtgttg ccctggctca ggtgaaaccc acctttgtgt agtgtctaga gcctcacagg
    15421 cagaaagggt gcttgtttcc tgatgacgtg agaaaatatg ggaaaatgct ttgcacactg
    15481 tgaaatagtt tacaaagcag ggcaatacta atgtacatat taacccagtt tagtaacagc
    15541 tttggctatt ttatttcgtc atatatataa taatctgtag ggactggtta tggaattaag
    15601 taacttagaa ttcatgagtt ttgtattgcg attgtctgtg taaattacca gctttgactt
    15661 tcgtgttctt tgagcatcac tttgtaactc ttctctgtgc ctttctaatg gatccatata
    15721 tcatgtcccg tcacaagtgg aactgcaaga agacacctct gctcggggca gaggctgggt
    15781 cttccgatcg catctccctt ctttcttcag tgagatcctc ttcttctgga agctggtttc
    15841 acatggtggc ttagattttt ccatctttgt atctagcacc atttgaaatc agtgttttag
    15901 gagtaagaat tgcagcacag caaaaggcca accgcagagg agctgctgct cgtgggatca
    15961 gcttccctcc ttctgccacc tgagccggtt caagaaaagg aagaacttga gaatcaaagt
    16021 acactcttga gtgtgttggg ttgtggaagg ggacagtgca gggatggggt cgtgttcaat
    16081 agaaactcag aggcttgagc agagccagag gttgtgattg tctttctgtt gacagggagc
    16141 ggcaacccct agcagtagcc tgttggtaag gcctttgagc acacgcttgg gcaatgccgg
    16201 gttgggtact tgattgcaat aggcaagggg aggggtgtgg accagaagga ctatctcatc
    16261 acatcagcac tgtccacctg ctcctagatg ccgtgaaaca ttcagctgca gttgccgagc
    16321 agctgaaatc agacttgcca cctgcactgt caaggtgccg gaccccaccg agcaccactg
    16381 gacccatctc ttacacaggc tgaccgattt ctcctggtgt tcagagtctg tttttgtcta
    16441 gcaccatttg aaatcggtta tgatgtaggg ggaaaagcag cagcctcgag gcctcatgcc
    16501 aagtctggtc agcaacagcc tggggcttcc tggaagatgg atgcgcagag agagggggag
    16561 gaaggttatg ctttttcctg ctagcttctt taactacatc tacaatactt tatgcacggg
    16621 taatagatca gttaatggat ttttcagaag caaatcacta aaatttatct gatgtcctcg
    16681 gtttgccgaa atgtggtagt gatgtaaact ataaattggt tgctgttgaa ttatctttca
    16741 gtcatgcatc ctgaccttaa taaatgcttt actgtacaca att
//
LOCUS       XR_004351830           16553 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X23, misc_RNA.
ACCESSION   XR_004351830
VERSION     XR_004351830.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16553
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16553
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16553
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X23"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggtgggtg gaccaatggc agtgggaatt ttccgatcag ccacacctca gcgttgcggc
    11221 aaaataaatc ttggctcccc tggaaacgca tgggcaaggt agggcagagc tgctactgct
    11281 gctgttgccg ccaccctggg cttcctgctg actccgggct cctccccggg gacaggagat
    11341 ttgcattgac gtcccaggct gtccagagct gagcccatta tgggaaggac ctgccttctg
    11401 gaagctgctg ctccccggtg cttggaaagg taccacatcc gtctggttca cggcggttat
    11461 ttcatttatt cctcacctca accctgcgag gagagtccca tggccggttc acccaagaca
    11521 atggggattt tttgtagctg aaattgatgg actaacaaac ttcagttttc ctggtctcct
    11581 tcctctcgaa acaggaggca gaggagcttt tgcatcagga aaacaccatg gaaacgccat
    11641 gagcattggt ggtggcggag tgagggttaa acagtgagcc ttcctgggat ccttttgatg
    11701 ccagtgtgtc gggagcctgg agatggagcg ctcagccgag tggccaggac gttctgtcaa
    11761 catgaaagca gcaaaaacag tttgtcgggg ctcagcgctg accccgggct ggtgtcattt
    11821 tcaggaaggg cttggcacaa gaaagaccac cgccaggcac gggattgggg gtgacgtcgg
    11881 ataactcagt aggcccctat agacccttga attttagaat ctgaaaagaa aatcagctgt
    11941 ttgtctttta ttagatgagc ttggcaaaca ggatcacttc ttgaactcct ctcactggtc
    12001 cccaacaaga gacatcttcc caggttcaga aaaccctttg ggatttctcg gttgtggctt
    12061 attgccttgg atggagggca ggtcccttct agggggcagg ggtgggcctg gcagtcctag
    12121 tgcccgttat ggggatatgg agtcgtaggt ttcctctgct ggcatcacgt gaagacggtg
    12181 gatccacatc acaggccttg agctgaagac cagctcttgg gcagcccact tcagcctctc
    12241 ctttccttat tatctcaaat caaagtctta tcttctcccc ttcatcttcc tcatttcttt
    12301 cttaggcgca gtagtgggcc tgaagtcctt gacctttgcg tctgtgtgtg tgtcatcatg
    12361 gcggctcagg gttctagact tttcttgaat ctgcagcatt gcgctttgtg cgcgtgacgc
    12421 cccccccccc ccccgctccg ccccgcccac ccggccccgc cccaccaggc cttcttcgga
    12481 gcaagagaga acatgggcct ccatcgccac tgaacctcag ccaagccgtc atccccagca
    12541 tctggcctcc cttctctcct cccccgcttt cggccagtgt ctggggtgga ggagcaaaca
    12601 acttgtggga ggagatggag ggacagcctg gcctggagct ctctgcctcc tttcctcgtg
    12661 tgccattttt cagcctcacg cttcctgtgg atggatgatg ccagcactga catttgtcgc
    12721 cgagcgcctc ctctccccaa ggacttcccc gcgtgactct tttggggtct ggaaagagtg
    12781 gctctggggc cttgggagcc agaggggaca gggggacctg gcccaggtca cagcagactg
    12841 tgagacgggc gaggggtggg agctggccga acccacccaa gcgcaaaggc agccccggcc
    12901 cctttgcgtc atgtcttttt cagcctgagg agagagcaac ttgacctaaa aaaattgtat
    12961 atatgtgggt gttggatcct ttgtgtctct ttgtccagaa gctgtgcatg tgatgagagc
    13021 ccaggtctct gtactgtaca gagaactgtt gtccttcagg tttgttttca gaaagatgtg
    13081 atggatgggc cgtccttgat gagaccgcgt gcccgctggg actggccttc ctccaggatg
    13141 ctgggcccgg cgtggtgttt cttctgtcag tggacgagaa ctcagaggag ttcagctcca
    13201 tgagtaggtg acaaactcct ggagactcag ctgacgatgg tgccggtgtg cagaagacag
    13261 ttgtcatcct gtgggataag cgtgtgcccg tttgcattta tttggaacaa aaaaaggagc
    13321 tgcctggcag cctggctctc tgcaaggtgc tgttgagccc ctggtttgtg tggttctgtg
    13381 accacaagtg ctgatggatg tggcgccatc ccagtcttgt cggtgaacca tcaccagcct
    13441 gcttattgga aaccaggcgc agcaaggaag ctaggattca acgccctcct tccctgcctc
    13501 ccagcccgcc tccaaaagaa tttaatctgc tggacaacaa acaatactgt tataaaactt
    13561 tgaaaacaag agggcgcggc ctccctgaca aggagaaggg catgccgggt aatgggcgag
    13621 ggagcctgcc aggcccgaga tggagccagg caagagccca gttggctggg cacctgggtg
    13681 cccgcccctg cccagcccac cagccgtgcc atccccagtc cagaggagaa ggaaccgaaa
    13741 caaaagtggg ggcagcggag ctcttgaaaa ggggaagttg tcctgagact ggcagacaga
    13801 ggtcctgata acagaatgag gctggcatag ccgtgaaggt acagccacca gcctggccag
    13861 ctgcagggga agcaggagag aaaggtgctc caagctggct ttggactcca gacctaccct
    13921 ctgtctgccc agcctcccac cccccaccta gggaagtgga accaggtcat gggcatgacc
    13981 cggtccatgt gctctgccag gagccctgaa accagcattc ccagcggcag gaagatggat
    14041 gatctgggct ccacttccgg cgctcctccc ccactctggc tggaacttgc gtcagtcata
    14101 tcaaggaggc cctcgggttg ggtgccaggg agagcaagct gcttccagcc gcatgaaatc
    14161 acctggctac ttgcaactag gggacaaaat cagcatctgg tttcagagaa ccgagagtat
    14221 tttagaactc gagagttgga gcccaaactc agccgtgcag tggagaccac agaggcacca
    14281 gggtgctgga gaacaaagca agtatcgaag caccggctcc ttgcagaacc aggcgtgctc
    14341 tcatctccac ccaagtttaa tgtgttgtac agtcagtaat acccaccccc atctatgcag
    14401 aaatattgcc taggactacc ctcaccctca atcttcctca taattaagtt caagaacaga
    14461 atgagacggt agtccagcta cagaacagga ggcagtgggc agaagagtag gagcacagac
    14521 tttggagtca gacctggaat cgacaccatt cactagtcat gggactgtgg acaagttttt
    14581 gaaccacact gaggatcagt ttcttctcct gccaaaaagg gaatactacc tactccgcaa
    14641 gactgttgtg agaattcaag agcacagctt ggtgttcaaa ttttatttcc ttctcttccc
    14701 tagagcagca catgatgtta tgtccaggag gcgtaaaaag tagaagggtt tatctagagt
    14761 cctgaagaat tggtagggaa ccggagagat gcagattctt ctttctcctg gttatggtat
    14821 cagaggaaat acagacatat tttcttagct tcaaacaacc aaaaaagatg gtgcaagtag
    14881 gagatgagaa atctaatttg aacaccattt gcaaacctaa ttttcaggca gaatttgaaa
    14941 acaacacaaa acaaaactcc attcttttat tagaggatta tctacttagt acaattataa
    15001 gacactaatc tttttgtgtc acagtagaga ataaataaga ttggcaatta acggggtcat
    15061 atttgaatgt cctgactgct cacgtatggc tgggaaggcg gagcccgtga tctacgtgac
    15121 taggacacat ggaagtgttg ccctggctca ggtgaaaccc acctttgtgt agtgtctaga
    15181 gcctcacagg cagaaagggt gcttgtttcc tgatgacgtg agaaaatatg ggaaaatgct
    15241 ttgcacactg tgaaatagtt tacaaagcag ggcaatacta atgtacatat taacccagtt
    15301 tagtaacagc tttggctatt ttatttcgtc atatatataa taatctgtag ggactggtta
    15361 tggaattaag taacttagaa ttcatgagtt ttgtattgcg attgtctgtg taaattacca
    15421 gctttgactt tcgtgttctt tgagcatcac tttgtaactc ttctctgtgc ctttctaatg
    15481 gatccatata tcatgtcccg tcacaagtgg aactgcaaga agacacctct gctcggggca
    15541 gaggctgggt cttccgatcg catctccctt ctttcttcag tgagatcctc ttcttctgga
    15601 agctggtttc acatggtggc ttagattttt ccatctttgt atctagcacc atttgaaatc
    15661 agtgttttag gagtaagaat tgcagcacag caaaaggcca accgcagagg agctgctgct
    15721 cgtgggatca gcttccctcc ttctgccacc tgagccggtt caagaaaagg aagaacttga
    15781 gaatcaaagt acactcttga gtgtgttggg ttgtggaagg ggacagtgca gggatggggt
    15841 cgtgttcaat agaaactcag aggcttgagc agagccagag gttgtgattg tctttctgtt
    15901 gacagggagc ggcaacccct agcagtagcc tgttggtaag gcctttgagc acacgcttgg
    15961 gcaatgccgg gttgggtact tgattgcaat aggcaagggg aggggtgtgg accagaagga
    16021 ctatctcatc acatcagcac tgtccacctg ctcctagatg ccgtgaaaca ttcagctgca
    16081 gttgccgagc agctgaaatc agacttgcca cctgcactgt caaggtgccg gaccccaccg
    16141 agcaccactg gacccatctc ttacacaggc tgaccgattt ctcctggtgt tcagagtctg
    16201 tttttgtcta gcaccatttg aaatcggtta tgatgtaggg ggaaaagcag cagcctcgag
    16261 gcctcatgcc aagtctggtc agcaacagcc tggggcttcc tggaagatgg atgcgcagag
    16321 agagggggag gaaggttatg ctttttcctg ctagcttctt taactacatc tacaatactt
    16381 tatgcacggg taatagatca gttaatggat ttttcagaag caaatcacta aaatttatct
    16441 gatgtcctcg gtttgccgaa atgtggtagt gatgtaaact ataaattggt tgctgttgaa
    16501 ttatctttca gtcatgcatc ctgaccttaa taaatgcttt actgtacaca att
//
LOCUS       XR_004351832           16663 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X24, misc_RNA.
ACCESSION   XR_004351832
VERSION     XR_004351832.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16663
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16663
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16663
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X24"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggtgggtg gaccaatggc aggagatttg cattgacgtc ccaggctgtc cagagctgag
    11221 cccattatgg gaaggacctg ccttctggaa gctgctgctc cccggtgctt ggaaagtgat
    11281 actctccacg cctcctctcc actgcaccca cctgcggcag tcccaccgtc ttccgtggac
    11341 ctctcctgat taccttcaca agaagcagcc ctcctcccat ccggccagac tcccatacgc
    11401 ttcatgcctc ttttgtgcta ctgtagatgt gctgtggttc ttcgtgtata agtcttatgt
    11461 cacctattag attgtgagcc ccaggaagct aggggaaaga agggaaacat gtacctgcgt
    11521 ggtgctttct gtttgccagg taccacatcc gtctggttca cggcggttat ttcatttatt
    11581 cctcacctca accctgcgag gagagtccca tggccggttc acccaagaca atggggattt
    11641 tttgtagctg aaattgatgg actaacaaac ttcagttttc ctggtctcct tcctctcgaa
    11701 acaggaggca gaggagcttt tgcatcagga aaacaccatg gaaacgccat gagcattggt
    11761 ggtggcggag tgagggttaa acagtgagcc ttcctgggat ccttttgatg ccagtgtgtc
    11821 gggagcctgg agatggagcg ctcagccgag tggccaggac gttctgtcaa catgaaagca
    11881 gcaaaaacag tttgtcgggg ctcagcgctg accccgggct ggtgtcattt tcaggaaggg
    11941 cttggcacaa gaaagaccac cgccaggcac gggattgggg gtgacgtcgg ataactcagt
    12001 aggcccctat agacccttga attttagaat ctgaaaagaa aatcagctgt ttgtctttta
    12061 ttagatgagc ttggcaaaca ggatcacttc ttgaactcct ctcactggtc cccaacaaga
    12121 gacatcttcc caggttcaga aaaccctttg ggatttctcg gttgtggctt attgccttgg
    12181 atggagggca ggtcccttct agggggcagg ggtgggcctg gcagtcctag tgcccgttat
    12241 ggggatatgg agtcgtaggt ttcctctgct ggcatcacgt gaagacggtg gatccacatc
    12301 acaggccttg agctgaagac cagctcttgg gcagcccact tcagcctctc ctttccttat
    12361 tatctcaaat caaagtctta tcttctcccc ttcatcttcc tcatttcttt cttaggcgca
    12421 gtagtgggcc tgaagtcctt gacctttgcg tctgtgtgtg tgtcatcatg gcggctcagg
    12481 gttctagact tttcttgaat ctgcagcatt gcgctttgtg cgcgtgacgc cccccccccc
    12541 ccccgctccg ccccgcccac ccggccccgc cccaccaggc cttcttcgga gcaagagaga
    12601 acatgggcct ccatcgccac tgaacctcag ccaagccgtc atccccagca tctggcctcc
    12661 cttctctcct cccccgcttt cggccagtgt ctggggtgga ggagcaaaca acttgtggga
    12721 ggagatggag ggacagcctg gcctggagct ctctgcctcc tttcctcgtg tgccattttt
    12781 cagcctcacg cttcctgtgg atggatgatg ccagcactga catttgtcgc cgagcgcctc
    12841 ctctccccaa ggacttcccc gcgtgactct tttggggtct ggaaagagtg gctctggggc
    12901 cttgggagcc agaggggaca gggggacctg gcccaggtca cagcagactg tgagacgggc
    12961 gaggggtggg agctggccga acccacccaa gcgcaaaggc agccccggcc cctttgcgtc
    13021 atgtcttttt cagcctgagg agagagcaac ttgacctaaa aaaattgtat atatgtgggt
    13081 gttggatcct ttgtgtctct ttgtccagaa gctgtgcatg tgatgagagc ccaggtctct
    13141 gtactgtaca gagaactgtt gtccttcagg tttgttttca gaaagatgtg atggatgggc
    13201 cgtccttgat gagaccgcgt gcccgctggg actggccttc ctccaggatg ctgggcccgg
    13261 cgtggtgttt cttctgtcag tggacgagaa ctcagaggag ttcagctcca tgagtaggtg
    13321 acaaactcct ggagactcag ctgacgatgg tgccggtgtg cagaagacag ttgtcatcct
    13381 gtgggataag cgtgtgcccg tttgcattta tttggaacaa aaaaaggagc tgcctggcag
    13441 cctggctctc tgcaaggtgc tgttgagccc ctggtttgtg tggttctgtg accacaagtg
    13501 ctgatggatg tggcgccatc ccagtcttgt cggtgaacca tcaccagcct gcttattgga
    13561 aaccaggcgc agcaaggaag ctaggattca acgccctcct tccctgcctc ccagcccgcc
    13621 tccaaaagaa tttaatctgc tggacaacaa acaatactgt tataaaactt tgaaaacaag
    13681 agggcgcggc ctccctgaca aggagaaggg catgccgggt aatgggcgag ggagcctgcc
    13741 aggcccgaga tggagccagg caagagccca gttggctggg cacctgggtg cccgcccctg
    13801 cccagcccac cagccgtgcc atccccagtc cagaggagaa ggaaccgaaa caaaagtggg
    13861 ggcagcggag ctcttgaaaa ggggaagttg tcctgagact ggcagacaga ggtcctgata
    13921 acagaatgag gctggcatag ccgtgaaggt acagccacca gcctggccag ctgcagggga
    13981 agcaggagag aaaggtgctc caagctggct ttggactcca gacctaccct ctgtctgccc
    14041 agcctcccac cccccaccta gggaagtgga accaggtcat gggcatgacc cggtccatgt
    14101 gctctgccag gagccctgaa accagcattc ccagcggcag gaagatggat gatctgggct
    14161 ccacttccgg cgctcctccc ccactctggc tggaacttgc gtcagtcata tcaaggaggc
    14221 cctcgggttg ggtgccaggg agagcaagct gcttccagcc gcatgaaatc acctggctac
    14281 ttgcaactag gggacaaaat cagcatctgg tttcagagaa ccgagagtat tttagaactc
    14341 gagagttgga gcccaaactc agccgtgcag tggagaccac agaggcacca gggtgctgga
    14401 gaacaaagca agtatcgaag caccggctcc ttgcagaacc aggcgtgctc tcatctccac
    14461 ccaagtttaa tgtgttgtac agtcagtaat acccaccccc atctatgcag aaatattgcc
    14521 taggactacc ctcaccctca atcttcctca taattaagtt caagaacaga atgagacggt
    14581 agtccagcta cagaacagga ggcagtgggc agaagagtag gagcacagac tttggagtca
    14641 gacctggaat cgacaccatt cactagtcat gggactgtgg acaagttttt gaaccacact
    14701 gaggatcagt ttcttctcct gccaaaaagg gaatactacc tactccgcaa gactgttgtg
    14761 agaattcaag agcacagctt ggtgttcaaa ttttatttcc ttctcttccc tagagcagca
    14821 catgatgtta tgtccaggag gcgtaaaaag tagaagggtt tatctagagt cctgaagaat
    14881 tggtagggaa ccggagagat gcagattctt ctttctcctg gttatggtat cagaggaaat
    14941 acagacatat tttcttagct tcaaacaacc aaaaaagatg gtgcaagtag gagatgagaa
    15001 atctaatttg aacaccattt gcaaacctaa ttttcaggca gaatttgaaa acaacacaaa
    15061 acaaaactcc attcttttat tagaggatta tctacttagt acaattataa gacactaatc
    15121 tttttgtgtc acagtagaga ataaataaga ttggcaatta acggggtcat atttgaatgt
    15181 cctgactgct cacgtatggc tgggaaggcg gagcccgtga tctacgtgac taggacacat
    15241 ggaagtgttg ccctggctca ggtgaaaccc acctttgtgt agtgtctaga gcctcacagg
    15301 cagaaagggt gcttgtttcc tgatgacgtg agaaaatatg ggaaaatgct ttgcacactg
    15361 tgaaatagtt tacaaagcag ggcaatacta atgtacatat taacccagtt tagtaacagc
    15421 tttggctatt ttatttcgtc atatatataa taatctgtag ggactggtta tggaattaag
    15481 taacttagaa ttcatgagtt ttgtattgcg attgtctgtg taaattacca gctttgactt
    15541 tcgtgttctt tgagcatcac tttgtaactc ttctctgtgc ctttctaatg gatccatata
    15601 tcatgtcccg tcacaagtgg aactgcaaga agacacctct gctcggggca gaggctgggt
    15661 cttccgatcg catctccctt ctttcttcag tgagatcctc ttcttctgga agctggtttc
    15721 acatggtggc ttagattttt ccatctttgt atctagcacc atttgaaatc agtgttttag
    15781 gagtaagaat tgcagcacag caaaaggcca accgcagagg agctgctgct cgtgggatca
    15841 gcttccctcc ttctgccacc tgagccggtt caagaaaagg aagaacttga gaatcaaagt
    15901 acactcttga gtgtgttggg ttgtggaagg ggacagtgca gggatggggt cgtgttcaat
    15961 agaaactcag aggcttgagc agagccagag gttgtgattg tctttctgtt gacagggagc
    16021 ggcaacccct agcagtagcc tgttggtaag gcctttgagc acacgcttgg gcaatgccgg
    16081 gttgggtact tgattgcaat aggcaagggg aggggtgtgg accagaagga ctatctcatc
    16141 acatcagcac tgtccacctg ctcctagatg ccgtgaaaca ttcagctgca gttgccgagc
    16201 agctgaaatc agacttgcca cctgcactgt caaggtgccg gaccccaccg agcaccactg
    16261 gacccatctc ttacacaggc tgaccgattt ctcctggtgt tcagagtctg tttttgtcta
    16321 gcaccatttg aaatcggtta tgatgtaggg ggaaaagcag cagcctcgag gcctcatgcc
    16381 aagtctggtc agcaacagcc tggggcttcc tggaagatgg atgcgcagag agagggggag
    16441 gaaggttatg ctttttcctg ctagcttctt taactacatc tacaatactt tatgcacggg
    16501 taatagatca gttaatggat ttttcagaag caaatcacta aaatttatct gatgtcctcg
    16561 gtttgccgaa atgtggtagt gatgtaaact ataaattggt tgctgttgaa ttatctttca
    16621 gtcatgcatc ctgaccttaa taaatgcttt actgtacaca att
//
LOCUS       XR_004351833            8356 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X25, misc_RNA.
ACCESSION   XR_004351833
VERSION     XR_004351833.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8356
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8356
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..8356
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X25"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gtggcggagg agatgggaag ggcagaagcc aaggtaaggc caagcaacca gggagatgta
       61 cagatgctct cctgagtgca tttgacattc ttgccccagg tcgcttctca gtgttgttcc
      121 cctgcccctg acacagtccc tcagtttcca tgagttcgag ggagaccagc atatttttgg
      181 atgggctcaa gccaaacggt gaggaaagta atgctactta gtggactaaa taccagtgat
      241 gttggagtta cctgcttttg gttgttgttt ttttgtttgt ttagagtttt ctgtctcctt
      301 ttgttcatag aagtcacttg ggggatggat tatctgataa atcctggtgt tctcggagtt
      361 cacgttcact gcttccctta tcctcatgtg aaggactaag atgatgattg tgggctccgg
      421 aaccatgttt tagattattg ctgtctgatc cagcagccag gacagccgaa accaaaagcc
      481 tctgaagtcc tgttcagcga tggaaatgtg gttggtccca cctttgtccc tggagttgtc
      541 aagcatgaaa atggggagga gttcatcagg gaaggacaga gttcggagga agtctcctaa
      601 gaggaggatg tcactagctt gcctagcaca gtggttggga gtctggtact ggctgcatac
      661 cctgcacagg ctcctcagcc cctaacctgt aaagtggagg tgatggccat cccagcttcc
      721 aagtgccgtg gtgaggaccg actgagctgt gatacacgca tggggccggc accaggcctg
      781 atgcgtggtg agtgattagt ggatattgag gtccacgttc atgaggcgga tgctgtttgg
      841 acaggcccta aaattctgag ccccggaaga gtggagatcc ggactggttt tactatagat
      901 tcttcaggcc gccgctcaat ttggtttctc caattcctgc cccagtagaa ggagctcact
      961 catggggtaa gcaggcaatg ttttaattat gctttttgtc cttagaaaat tccaggaaga
     1021 aaaaagatcc tggtctgtgg ccaaaaaagc agaaaacaac gaaaatcagc gacggctgta
     1081 attctggact tgtctgtggc agaaagagtt aataggacgg tggtctcagg gtgggggccg
     1141 ttatattctc gggtccagga gaagctcacg tggttcaaga aaagatgacg ccacatttag
     1201 tgtgggacag ccctgtctgg gttctgggcg ctgtcactca aagagttaag ctagtcttat
     1261 ggctggggag ccctcaggga aggcctgagc ctgcagggac caggccctct acgccccaga
     1321 gcagtgaggt ctggggtaaa agaggggctg agaagtgtgg ccaggaaagc cgagtgtagg
     1381 cccaactttt ttttttgcct tgtttgacca gccttggcac tgccctctgg ctctccaggg
     1441 gaaaagctgc agttctgctc ttgcaacaca aggagcagac tggagaattt agatctgcgt
     1501 cacagagctc agagagagag agaggagaga ggggagagag agagggagag agagagagag
     1561 cgcgagcgct ccgtcgatag gtctgctagc aacagccgtg ctgcagcaga gagagagaga
     1621 gaaatcaaga aacaagtcat agcaacaccg ggcaccaggt tctgccagct cacttgccaa
     1681 gcgttcagaa atctgtcagg ggccggaggc ctctgggtag cctaggctaa ggagatgaca
     1741 cgcaaggtgg cacgggcggt tcccgcgggg aggaggcgac gatgggtggt ccgatgggct
     1801 tcaggacttg atggcgtaac ccccgtcttc ccccacgtac gtatttgctg ggatcggggg
     1861 cgatgtctct gcgtatgtgg gtgctctgtc tttctcacct tctttcttgc tttttgctat
     1921 tttttttttt ttttttctga gggaggggtt ttttccactt taatttcttt tcccttagtg
     1981 tcagctgctc aagcctgacc gaggtagagg aaagaggagc aagccgtccc tggcgtccca
     2041 cctgacctcc cagcctctac ccccatttcc ttctatcggg cagacagaca gacacacagg
     2101 ctggttttcc aagttgtttg ggtatcagtg tctgtccgtc catatggttc tcaggtagaa
     2161 ggtacggagt gaggaggaga agtgttgaga ggaaggcgag aggggcagct ttctaggggt
     2221 tgccttgttg aaacattcgg ccctgggaat ccggggctgt tggggagcag gtgggcagga
     2281 tggggtgtgg gctgcgagaa gtggggtaaa gctggtaggt ttgtcactgc gtagttgggg
     2341 aaagtgggga atggtgacgc agtcactgtt ggatcttgtt aggggctctg gggggacagg
     2401 tagtgagggt cccaggatct gtagggccag ctgagagggg ttgaggatga gctgagaagg
     2461 gaagctagca tttagagatt aaatgtcatc cttttggcgt tggaaagttg tttaccttgt
     2521 gctctctgtg tctccatgtt ggcacccttc cagttcacat gtgatggcct tccttgtact
     2581 gctgcatcat taactaagtg actgagctgg ccttccattg gccaggggag ggctctcact
     2641 ccagacactt cctctgattg gtgggtggac caatggcagg tgaaaacctt tttttgattg
     2701 gctgagggaa gggtatcaaa tctgaatttg catttcactt gcttaaaggg gagggggggg
     2761 aagcccagca gctttctaaa atctgtttag gggtgtgcgt atgctcctgt gtctgtgcct
     2821 gcttctgact gaccggttga agcctcttcc tgtgcctttt taacttcatg cactgtaagg
     2881 gagaggagct gagggctccc caaacttttg tttcggaggg gcaggggttg ggaagatggg
     2941 cacgcagagg gttgaccaaa ctggaagaaa atactcgttc tttagtggga attttccgat
     3001 cagccacacc tcagcgttgc ggcaaaataa atcttggctc ccctggaaac gcatgggcaa
     3061 ggtagggcag agctgctact gctgctgttg ccgccaccct gggcttcctg ctgactccgg
     3121 gctcctcccc ggggacagga gatttgcatt gacgtcccag gctgtccaga gctgagccca
     3181 ttatgggaag gacctgcctt ctggaagctg ctgctccccg gtgcttggaa aggtaccaca
     3241 tccgtctggt tcacggcggt tatttcattt attcctcacc tcaaccctgc gaggagagtc
     3301 ccatggccgg ttcacccaag acaatgggga ttttttgtag ctgaaattga tggactaaca
     3361 aacttcagtt ttcctggtct ccttcctctc gaaacaggag gcagaggagc ttttgcatca
     3421 ggaaaacacc atggaaacgc catgagcatt ggtggtggcg gagtgagggt taaacagtga
     3481 gccttcctgg gatccttttg atgccagtgt gtcgggagcc tggagatgga gcgctcagcc
     3541 gagtggccag gacgttctgt caacatgaaa gcagcaaaaa cagtttgtcg gggctcagcg
     3601 ctgaccccgg gctggtgtca ttttcaggaa gggcttggca caagaaagac caccgccagg
     3661 cacgggattg ggggtgacgt cggataactc agtaggcccc tatagaccct tgaattttag
     3721 aatctgaaaa gaaaatcagc tgtttgtctt ttattagatg agcttggcaa acaggatcac
     3781 ttcttgaact cctctcactg gtccccaaca agagacatct tcccaggttc agaaaaccct
     3841 ttgggatttc tcggttgtgg cttattgcct tggatggagg gcaggtccct tctagggggc
     3901 aggggtgggc ctggcagtcc tagtgcccgt tatggggata tggagtcgta ggtttcctct
     3961 gctggcatca cgtgaagacg gtggatccac atcacaggcc ttgagctgaa gaccagctct
     4021 tgggcagccc acttcagcct ctcctttcct tattatctca aatcaaagtc ttatcttctc
     4081 cccttcatct tcctcatttc tttcttaggc gcagtagtgg gcctgaagtc cttgaccttt
     4141 gcgtctgtgt gtgtgtcatc atggcggctc agggttctag acttttcttg aatctgcagc
     4201 attgcgcttt gtgcgcgtga cgcccccccc cccccccgct ccgccccgcc cacccggccc
     4261 cgccccacca ggccttcttc ggagcaagag agaacatggg cctccatcgc cactgaacct
     4321 cagccaagcc gtcatcccca gcatctggcc tcccttctct cctcccccgc tttcggccag
     4381 tgtctggggt ggaggagcaa acaacttgtg ggaggagatg gagggacagc ctggcctgga
     4441 gctctctgcc tcctttcctc gtgtgccatt tttcagcctc acgcttcctg tggatggatg
     4501 atgccagcac tgacatttgt cgccgagcgc ctcctctccc caaggacttc cccgcgtgac
     4561 tcttttgggg tctggaaaga gtggctctgg ggccttggga gccagagggg acagggggac
     4621 ctggcccagg tcacagcaga ctgtgagacg ggcgaggggt gggagctggc cgaacccacc
     4681 caagcgcaaa ggcagccccg gcccctttgc gtcatgtctt tttcagcctg aggagagagc
     4741 aacttgacct aaaaaaattg tatatatgtg ggtgttggat cctttgtgtc tctttgtcca
     4801 gaagctgtgc atgtgatgag agcccaggtc tctgtactgt acagagaact gttgtccttc
     4861 aggtttgttt tcagaaagat gtgatggatg ggccgtcctt gatgagaccg cgtgcccgct
     4921 gggactggcc ttcctccagg atgctgggcc cggcgtggtg tttcttctgt cagtggacga
     4981 gaactcagag gagttcagct ccatgagtag gtgacaaact cctggagact cagctgacga
     5041 tggtgccggt gtgcagaaga cagttgtcat cctgtgggat aagcgtgtgc ccgtttgcat
     5101 ttatttggaa caaaaaaagg agctgcctgg cagcctggct ctctgcaagg tgctgttgag
     5161 cccctggttt gtgtggttct gtgaccacaa gtgctgatgg atgtggcgcc atcccagtct
     5221 tgtcggtgaa ccatcaccag cctgcttatt ggaaaccagg cgcagcaagg aagctaggat
     5281 tcaacgccct ccttccctgc ctcccagccc gcctccaaaa gaatttaatc tgctggacaa
     5341 caaacaatac tgttataaaa ctttgaaaac aagagggcgc ggcctccctg acaaggagaa
     5401 gggcatgccg ggtaatgggc gagggagcct gccaggcccg agatggagcc aggcaagagc
     5461 ccagttggct gggcacctgg gtgcccgccc ctgcccagcc caccagccgt gccatcccca
     5521 gtccagagga gaaggaaccg aaacaaaagt gggggcagcg gagctcttga aaaggggaag
     5581 ttgtcctgag actggcagac agaggtcctg ataacagaat gaggctggca tagccgtgaa
     5641 ggtacagcca ccagcctggc cagctgcagg ggaagcagga gagaaaggtg ctccaagctg
     5701 gctttggact ccagacctac cctctgtctg cccagcctcc caccccccac ctagggaagt
     5761 ggaaccaggt catgggcatg acccggtcca tgtgctctgc caggagccct gaaaccagca
     5821 ttcccagcgg caggaagatg gatgatctgg gctccacttc cggcgctcct cccccactct
     5881 ggctggaact tgcgtcagtc atatcaagga ggccctcggg ttgggtgcca gggagagcaa
     5941 gctgcttcca gccgcatgaa atcacctggc tacttgcaac taggggacaa aatcagcatc
     6001 tggtttcaga gaaccgagag tattttagaa ctcgagagtt ggagcccaaa ctcagccgtg
     6061 cagtggagac cacagaggca ccagggtgct ggagaacaaa gcaagtatcg aagcaccggc
     6121 tccttgcaga accaggcgtg ctctcatctc cacccaagtt taatgtgttg tacagtcagt
     6181 aatacccacc cccatctatg cagaaatatt gcctaggact accctcaccc tcaatcttcc
     6241 tcataattaa gttcaagaac agaatgagac ggtagtccag ctacagaaca ggaggcagtg
     6301 ggcagaagag taggagcaca gactttggag tcagacctgg aatcgacacc attcactagt
     6361 catgggactg tggacaagtt tttgaaccac actgaggatc agtttcttct cctgccaaaa
     6421 agggaatact acctactccg caagactgtt gtgagaattc aagagcacag cttggtgttc
     6481 aaattttatt tccttctctt ccctagagca gcacatgatg ttatgtccag gaggcgtaaa
     6541 aagtagaagg gtttatctag agtcctgaag aattggtagg gaaccggaga gatgcagatt
     6601 cttctttctc ctggttatgg tatcagagga aatacagaca tattttctta gcttcaaaca
     6661 accaaaaaag atggtgcaag taggagatga gaaatctaat ttgaacacca tttgcaaacc
     6721 taattttcag gcagaatttg aaaacaacac aaaacaaaac tccattcttt tattagagga
     6781 ttatctactt agtacaatta taagacacta atctttttgt gtcacagtag agaataaata
     6841 agattggcaa ttaacggggt catatttgaa tgtcctgact gctcacgtat ggctgggaag
     6901 gcggagcccg tgatctacgt gactaggaca catggaagtg ttgccctggc tcaggtgaaa
     6961 cccacctttg tgtagtgtct agagcctcac aggcagaaag ggtgcttgtt tcctgatgac
     7021 gtgagaaaat atgggaaaat gctttgcaca ctgtgaaata gtttacaaag cagggcaata
     7081 ctaatgtaca tattaaccca gtttagtaac agctttggct attttatttc gtcatatata
     7141 taataatctg tagggactgg ttatggaatt aagtaactta gaattcatga gttttgtatt
     7201 gcgattgtct gtgtaaatta ccagctttga ctttcgtgtt ctttgagcat cactttgtaa
     7261 ctcttctctg tgcctttcta atggatccat atatcatgtc ccgtcacaag tggaactgca
     7321 agaagacacc tctgctcggg gcagaggctg ggtcttccga tcgcatctcc cttctttctt
     7381 cagtgagatc ctcttcttct ggaagctggt ttcacatggt ggcttagatt tttccatctt
     7441 tgtatctagc accatttgaa atcagtgttt taggagtaag aattgcagca cagcaaaagg
     7501 ccaaccgcag aggagctgct gctcgtggga tcagcttccc tccttctgcc acctgagccg
     7561 gttcaagaaa aggaagaact tgagaatcaa agtacactct tgagtgtgtt gggttgtgga
     7621 aggggacagt gcagggatgg ggtcgtgttc aatagaaact cagaggcttg agcagagcca
     7681 gaggttgtga ttgtctttct gttgacaggg agcggcaacc cctagcagta gcctgttggt
     7741 aaggcctttg agcacacgct tgggcaatgc cgggttgggt acttgattgc aataggcaag
     7801 gggaggggtg tggaccagaa ggactatctc atcacatcag cactgtccac ctgctcctag
     7861 atgccgtgaa acattcagct gcagttgccg agcagctgaa atcagacttg ccacctgcac
     7921 tgtcaaggtg ccggacccca ccgagcacca ctggacccat ctcttacaca ggctgaccga
     7981 tttctcctgg tgttcagagt ctgtttttgt ctagcaccat ttgaaatcgg ttatgatgta
     8041 gggggaaaag cagcagcctc gaggcctcat gccaagtctg gtcagcaaca gcctggggct
     8101 tcctggaaga tggatgcgca gagagagggg gaggaaggtt atgctttttc ctgctagctt
     8161 ctttaactac atctacaata ctttatgcac gggtaataga tcagttaatg gatttttcag
     8221 aagcaaatca ctaaaattta tctgatgtcc tcggtttgcc gaaatgtggt agtgatgtaa
     8281 actataaatt ggttgctgtt gaattatctt tcagtcatgc atcctgacct taataaatgc
     8341 tttactgtac acaatt
//
LOCUS       XR_004351834           15847 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X26, misc_RNA.
ACCESSION   XR_004351834
VERSION     XR_004351834.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15847
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15847
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15847
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X26"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggt gtcagctgct
     9481 caagcctgac cgaggtagag gaaagaggag caagccgtcc ctggcgtccc acctgacctc
     9541 ccagcctcta cccccatttc cttctatcgg gcagacagac agacacacag gctggttttc
     9601 caagttgttt gggtatcagt gtctgtccgt ccatatggtt ctcaggtaga aggtacggag
     9661 tgaggaggag aagtgttgag aggaaggcga gaggggcagc tttctagggg ttgccttgtt
     9721 gaaacattcg gccctgggaa tccggggctg ttggggagca ggtgggcagg atggggtgtg
     9781 ggctgcgaga agtggggtaa agctggtagg tttgtcactg cgtagttggg gaaagtgggg
     9841 aatggtgacg cagtcactgt tggatcttgt taggggctct ggggggacag gtagtgaggg
     9901 tcccaggatc tgtagggcca gctgagaggg gttgaggatg agctgagaag ggaagctagc
     9961 atttagagat taaatgtcat ccttttggcg ttggaaagtt gtttaccttg tgctctctgt
    10021 gtctccatgt tggcaccctt ccagttcaca tgtgatggcc ttccttgtac tgctgcatca
    10081 ttaactaagt gactgagctg gccttccatt ggccagggga gggctctcac tccagacact
    10141 tcctctgatt ggtgggtgga ccaatggcag gtgaaaacct ttttttgatt ggctgaggga
    10201 agggtatcaa atctgaattt gcatttcact tgcttaaagg ggaggggggg gaagcccagc
    10261 agctttctaa aatctgttta ggggtgtgcg tatgctcctg tgtctgtgcc tgcttctgac
    10321 tgaccggttg aagcctcttc ctgtgccttt ttaacttcat gcactgtaag ggagaggagc
    10381 tgagggctcc ccaaactttt gtttcggagg ggcaggggtt gggaagatgg gcacgcagag
    10441 ggttgaccaa actggaagaa aatactcgtt ctttagtggg aattttccga tcagccacac
    10501 ctcagcgttg cggcaaaata aatcttggct cccctggaaa cgcatgggca aggtagggca
    10561 gagctgctac tgctgctgtt gccgccaccc tgggcttcct gctgactccg ggctcctccc
    10621 cggggacagg agatttgcat tgacgtccca ggctgtccag agctgagccc attatgggaa
    10681 ggacctgcct tctggaagct gctgctcccc ggtgcttgga aaggtaccac atccgtctgg
    10741 ttcacggcgg ttatttcatt tattcctcac ctcaaccctg cgaggagagt cccatggccg
    10801 gttcacccaa gacaatgggg attttttgta gctgaaattg atggactaac aaacttcagt
    10861 tttcctggtc tccttcctct cgaaacagga ggcagaggag cttttgcatc aggaaaacac
    10921 catggaaacg ccatgagcat tggtggtggc ggagtgaggg ttaaacagtg agccttcctg
    10981 ggatcctttt gatgccagtg tgtcgggagc ctggagatgg agcgctcagc cgagtggcca
    11041 ggacgttctg tcaacatgaa agcagcaaaa acagtttgtc ggggctcagc gctgaccccg
    11101 ggctggtgtc attttcagga agggcttggc acaagaaaga ccaccgccag gcacgggatt
    11161 gggggtgacg tcggataact cagtaggccc ctatagaccc ttgaatttta gaatctgaaa
    11221 agaaaatcag ctgtttgtct tttattagat gagcttggca aacaggatca cttcttgaac
    11281 tcctctcact ggtccccaac aagagacatc ttcccaggtt cagaaaaccc tttgggattt
    11341 ctcggttgtg gcttattgcc ttggatggag ggcaggtccc ttctaggggg caggggtggg
    11401 cctggcagtc ctagtgcccg ttatggggat atggagtcgt aggtttcctc tgctggcatc
    11461 acgtgaagac ggtggatcca catcacaggc cttgagctga agaccagctc ttgggcagcc
    11521 cacttcagcc tctcctttcc ttattatctc aaatcaaagt cttatcttct ccccttcatc
    11581 ttcctcattt ctttcttagg cgcagtagtg ggcctgaagt ccttgacctt tgcgtctgtg
    11641 tgtgtgtcat catggcggct cagggttcta gacttttctt gaatctgcag cattgcgctt
    11701 tgtgcgcgtg acgccccccc ccccccccgc tccgccccgc ccacccggcc ccgccccacc
    11761 aggccttctt cggagcaaga gagaacatgg gcctccatcg ccactgaacc tcagccaagc
    11821 cgtcatcccc agcatctggc ctcccttctc tcctcccccg ctttcggcca gtgtctgggg
    11881 tggaggagca aacaacttgt gggaggagat ggagggacag cctggcctgg agctctctgc
    11941 ctcctttcct cgtgtgccat ttttcagcct cacgcttcct gtggatggat gatgccagca
    12001 ctgacatttg tcgccgagcg cctcctctcc ccaaggactt ccccgcgtga ctcttttggg
    12061 gtctggaaag agtggctctg gggccttggg agccagaggg gacaggggga cctggcccag
    12121 gtcacagcag actgtgagac gggcgagggg tgggagctgg ccgaacccac ccaagcgcaa
    12181 aggcagcccc ggcccctttg cgtcatgtct ttttcagcct gaggagagag caacttgacc
    12241 taaaaaaatt gtatatatgt gggtgttgga tcctttgtgt ctctttgtcc agaagctgtg
    12301 catgtgatga gagcccaggt ctctgtactg tacagagaac tgttgtcctt caggtttgtt
    12361 ttcagaaaga tgtgatggat gggccgtcct tgatgagacc gcgtgcccgc tgggactggc
    12421 cttcctccag gatgctgggc ccggcgtggt gtttcttctg tcagtggacg agaactcaga
    12481 ggagttcagc tccatgagta ggtgacaaac tcctggagac tcagctgacg atggtgccgg
    12541 tgtgcagaag acagttgtca tcctgtggga taagcgtgtg cccgtttgca tttatttgga
    12601 acaaaaaaag gagctgcctg gcagcctggc tctctgcaag gtgctgttga gcccctggtt
    12661 tgtgtggttc tgtgaccaca agtgctgatg gatgtggcgc catcccagtc ttgtcggtga
    12721 accatcacca gcctgcttat tggaaaccag gcgcagcaag gaagctagga ttcaacgccc
    12781 tccttccctg cctcccagcc cgcctccaaa agaatttaat ctgctggaca acaaacaata
    12841 ctgttataaa actttgaaaa caagagggcg cggcctccct gacaaggaga agggcatgcc
    12901 gggtaatggg cgagggagcc tgccaggccc gagatggagc caggcaagag cccagttggc
    12961 tgggcacctg ggtgcccgcc cctgcccagc ccaccagccg tgccatcccc agtccagagg
    13021 agaaggaacc gaaacaaaag tgggggcagc ggagctcttg aaaaggggaa gttgtcctga
    13081 gactggcaga cagaggtcct gataacagaa tgaggctggc atagccgtga aggtacagcc
    13141 accagcctgg ccagctgcag gggaagcagg agagaaaggt gctccaagct ggctttggac
    13201 tccagaccta ccctctgtct gcccagcctc ccacccccca cctagggaag tggaaccagg
    13261 tcatgggcat gacccggtcc atgtgctctg ccaggagccc tgaaaccagc attcccagcg
    13321 gcaggaagat ggatgatctg ggctccactt ccggcgctcc tcccccactc tggctggaac
    13381 ttgcgtcagt catatcaagg aggccctcgg gttgggtgcc agggagagca agctgcttcc
    13441 agccgcatga aatcacctgg ctacttgcaa ctaggggaca aaatcagcat ctggtttcag
    13501 agaaccgaga gtattttaga actcgagagt tggagcccaa actcagccgt gcagtggaga
    13561 ccacagaggc accagggtgc tggagaacaa agcaagtatc gaagcaccgg ctccttgcag
    13621 aaccaggcgt gctctcatct ccacccaagt ttaatgtgtt gtacagtcag taatacccac
    13681 ccccatctat gcagaaatat tgcctaggac taccctcacc ctcaatcttc ctcataatta
    13741 agttcaagaa cagaatgaga cggtagtcca gctacagaac aggaggcagt gggcagaaga
    13801 gtaggagcac agactttgga gtcagacctg gaatcgacac cattcactag tcatgggact
    13861 gtggacaagt ttttgaacca cactgaggat cagtttcttc tcctgccaaa aagggaatac
    13921 tacctactcc gcaagactgt tgtgagaatt caagagcaca gcttggtgtt caaattttat
    13981 ttccttctct tccctagagc agcacatgat gttatgtcca ggaggcgtaa aaagtagaag
    14041 ggtttatcta gagtcctgaa gaattggtag ggaaccggag agatgcagat tcttctttct
    14101 cctggttatg gtatcagagg aaatacagac atattttctt agcttcaaac aaccaaaaaa
    14161 gatggtgcaa gtaggagatg agaaatctaa tttgaacacc atttgcaaac ctaattttca
    14221 ggcagaattt gaaaacaaca caaaacaaaa ctccattctt ttattagagg attatctact
    14281 tagtacaatt ataagacact aatctttttg tgtcacagta gagaataaat aagattggca
    14341 attaacgggg tcatatttga atgtcctgac tgctcacgta tggctgggaa ggcggagccc
    14401 gtgatctacg tgactaggac acatggaagt gttgccctgg ctcaggtgaa acccaccttt
    14461 gtgtagtgtc tagagcctca caggcagaaa gggtgcttgt ttcctgatga cgtgagaaaa
    14521 tatgggaaaa tgctttgcac actgtgaaat agtttacaaa gcagggcaat actaatgtac
    14581 atattaaccc agtttagtaa cagctttggc tattttattt cgtcatatat ataataatct
    14641 gtagggactg gttatggaat taagtaactt agaattcatg agttttgtat tgcgattgtc
    14701 tgtgtaaatt accagctttg actttcgtgt tctttgagca tcactttgta actcttctct
    14761 gtgcctttct aatggatcca tatatcatgt cccgtcacaa gtggaactgc aagaagacac
    14821 ctctgctcgg ggcagaggct gggtcttccg atcgcatctc ccttctttct tcagtgagat
    14881 cctcttcttc tggaagctgg tttcacatgg tggcttagat ttttccatct ttgtatctag
    14941 caccatttga aatcagtgtt ttaggagtaa gaattgcagc acagcaaaag gccaaccgca
    15001 gaggagctgc tgctcgtggg atcagcttcc ctccttctgc cacctgagcc ggttcaagaa
    15061 aaggaagaac ttgagaatca aagtacactc ttgagtgtgt tgggttgtgg aaggggacag
    15121 tgcagggatg gggtcgtgtt caatagaaac tcagaggctt gagcagagcc agaggttgtg
    15181 attgtctttc tgttgacagg gagcggcaac ccctagcagt agcctgttgg taaggccttt
    15241 gagcacacgc ttgggcaatg ccgggttggg tacttgattg caataggcaa ggggaggggt
    15301 gtggaccaga aggactatct catcacatca gcactgtcca cctgctccta gatgccgtga
    15361 aacattcagc tgcagttgcc gagcagctga aatcagactt gccacctgca ctgtcaaggt
    15421 gccggacccc accgagcacc actggaccca tctcttacac aggctgaccg atttctcctg
    15481 gtgttcagag tctgtttttg tctagcacca tttgaaatcg gttatgatgt agggggaaaa
    15541 gcagcagcct cgaggcctca tgccaagtct ggtcagcaac agcctggggc ttcctggaag
    15601 atggatgcgc agagagaggg ggaggaaggt tatgcttttt cctgctagct tctttaacta
    15661 catctacaat actttatgca cgggtaatag atcagttaat ggatttttca gaagcaaatc
    15721 actaaaattt atctgatgtc ctcggtttgc cgaaatgtgg tagtgatgta aactataaat
    15781 tggttgctgt tgaattatct ttcagtcatg catcctgacc ttaataaatg ctttactgta
    15841 cacaatt
//
LOCUS       XR_004351837           17135 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X27, misc_RNA.
ACCESSION   XR_004351837
VERSION     XR_004351837.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17135
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..17135
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..17135
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X27"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 aggagggagg gagggagagc tcctggggga agaaggttct gctggaggtc agtctgctgt
       61 cgcttctcct caggccactt ttggagggtt gttcagatcc caatgagaag gaaaatgtca
      121 aagtagaatg agtgcagagg agggctgctg gcatatgagg aatggttaaa gcacgggcag
      181 atatacccca gagaggggaa ggtttcagca gaacgagttt gctgggcaga gttttgtgta
      241 ttgaaaggac tgtgatgtga tgtgggtgtc gggcttatta ctctgcggca gtgacagggc
      301 ggccgctgtt ggtgcaggga gctgggtcat tgtccctccc tttgagctgc gaaggactcg
      361 agggaggaaa gatgggtggc cctctgagat agtgagcccc ttcagcggtg ctcttggtgt
      421 tcacaggtaa gctgaatggc catgacgcag ggaatgctaa taataaaaag tcataatagt
      481 tgccacttcc tgaatgcttg ttgtgtagca ggcagtgtga cccagggctt tacttgtatg
      541 gactcactta atctcctaca acactgggca ggggtatgag tagctcctta gccctacttt
      601 atagacgaga aaacttagcc tgagaaatga agtaacccac ccaaggttcc atacattggc
      661 ctccagccca aggccagtct ccttgtattg gtgaaaggtg aggccggatg acctgtaggg
      721 tgtcttacaa caccaggttt ctaagtctct atctggtggg tcatcccagc catttgaatg
      781 gggttgggca gctctcttgg gtccagggca ggagtggcgg ttactgctct cctggtgacc
      841 tcactgggac tgggaagtca gcaggggtat tccgttggct gttaggaact ggccttgccg
      901 gggaagtggc tggggagccc ccaggcttat ctgagcatcc cagatccttg catccgatgt
      961 cctctaaccc tctggtgact ctggggtctt ggaagcacca gtggtccttt tttgtgtcag
     1021 cttccgcaga agcttcttga ctgtgtcgtc agcgcactca gcctgcaggt gtccccccac
     1081 ccccttagct ctgtcactgc agaagggcac agagtgatgt ccaggggcca tgacctgcct
     1141 tgttttgggg ggccagagtg ggattaagga gccagctgtc ctcctactgt cctagttctc
     1201 caggctctgg caaccgggaa agtccttgct tccatgggca gagttccccg aagagggcct
     1261 aacaccaagc ctgacacata gtcagcccca ggcatgtttt cttggaataa caaatgtgta
     1321 ggactcacct gccttctcag tgctcaccct aggccctgag gactctggag attttagagg
     1381 gagggcattg gagggtgggc cgctcctgtc actccacatt cagtggcact gggagaagct
     1441 tctcagcatc ctcctttgtg ttttaaggct gttactgttt ctctgcttcg ggggcaagaa
     1501 cactgacctt ccaggcctga accagatcct aacctgagaa taacggctgc ccgccagtcc
     1561 cagaggcctt cagagagctg aaccttcatg tgttgttcca acaccttccc tccgtaaatg
     1621 aaacactcac aggactgccc tttatcccac ggttctggtc atcatcccct ccctactctt
     1681 gagctctctg tgtgcatagg aggtactcac atcatcaaac attttgtggg accttacttt
     1741 tgttaaggct taatattatg aaaataatgt acaatgcatc cccaatatcg cccccaaata
     1801 tgacattaaa tattatgttt tagactgccc caagccctcg cccacccaag gctcgtcaga
     1861 tgagagcctt gtcccccctc cagctcctga caaggccggc gctttgctga aagtccagac
     1921 ctgtgccctg gtgtgcatga tggctctgag gtctttcctg tccctctcag gctgtgggca
     1981 aggtcatggg cgtgggcatg ccccctgtgt gggggagaag gcagtatgga agttaaagtg
     2041 caagtcagag ttgtttgggg aacccccatc ctacttgtgt ttgtgacaac tgctctctag
     2101 ttctgactca gctgagtgaa gcaatagctg gtaccggggc aggaaagaaa tgccattttt
     2161 gagacacgtg gcactcatgt ggtcatacag aggttagtac agccccgtga atcatcagtt
     2221 gcccaggttc tccataccct agatatgtct ggtcctgctc agcacttccc tctttgatca
     2281 agaaccccag gggcagcagt aacatctaag ggtcctagcc tgtgcctgga gggcatctgg
     2341 ccaagacccc tcatttcccc agccgaatct ggccggtggc acagatggca gggtccgccg
     2401 tgtagggatg gggtagagct cctttcagtc cgactcatgt ggcccggcca cactcccatc
     2461 tctctggaaa ttatttccat ccgttgacgg ccaggatttc aagaacagcc agccaagagt
     2521 tgcgttgggt tactccccga gtcccaagaa gactttgcct cctgcatttc aggcaaccct
     2581 agaagcccct cattcagggg ctttggctag tggaatgacc atgtttactg agccccagcc
     2641 cactgtcaga atagtaggtg cccgtcccat tgccagcctg ggttttgcct gaggctgagc
     2701 catgagccct ctggggcagt agcttagact taacgttcag tggcctaggg taaggcagac
     2761 gtttcggcct tttccatttt cccaggaggt ggcgggagcc agcttgggca ggacagtttg
     2821 gagcctggat ttttggcctg agaggcagac tgactcagtc tgcccagaag aaagcgtcaa
     2881 cttatgaata gagcatactg gccacgatat ctgccaccct aggcctgacc ttccccctaa
     2941 acaaacgtgc cccgtcacta cactgccctt ggcgtattcc acacgggagt ctctgttggt
     3001 gctggggctc acttctgttt gttaaggagc tgacttggcc ctcactcatc ttctttcacc
     3061 ctgtagtcag gggagtcctg tgttctcagg gccagcgtct ggcaggccac ttactgcctg
     3121 ctgcctggtt ccagctcccc gcccgtggcg gcattccgtg tctgcatctg catctcacct
     3181 ctgccaggac ctaccctcca gcacaggctg tccctagccc ttgtctctcg gattttcact
     3241 tggcacgtgg tgcagcattg tgtccttgga gtgtttgttt tcactgctgg ggccttgttt
     3301 cacttcagct cagcaacctg ggcagaagtg ccatggtcct ttgggttggg aatttgatgg
     3361 gaaaaactcc tcagtggttc tggggtagtt gtttctggag actgacgaga tgcggtcttt
     3421 aaggctgtta gacggaccac atcatggtcg ttattgttga tcgaagctat taacggcacg
     3481 gttctttcag gaaccctttt ccccatggat aacatcagac gtctaatcta caagtaccgt
     3541 ttctgacaac cgcccccccc ccgactcagc acgttttcag actttttcta attatatata
     3601 cttatagatt ctgtgttttt atttcttctt agagttccct gagattagaa tttccttacc
     3661 aggtagttaa ctgtcccagc aatttggctt ttatttggta ctcaagcttt ttcctcggca
     3721 ctcaagcttt ttcctcgaag gccctcctct gtcttcagcc tatcacctca acatactcca
     3781 ccttgtcgac ttggtcttgt cagtacgaag cgaggtgtgg ttgtgcctga ttggtacttg
     3841 gttgaaagac tgagattgcc aggtactaca ggtctcttga ggtgttacta ggccttttct
     3901 tccagtgcct ggtatggtac caaccacaaa agcatcatgg tccatcatca ccatcatcat
     3961 catagtgata ctggtaccag ctgaacatta actctgtgtt gggcattgtg ctgaacgctc
     4021 ctgtatctca taccatcctc accaggaaaa cccctaggaa gtatggatga agctgaaaat
     4081 aggaacttag gaaggtcaaa taagtcgttc aagtctgtat aactagtaga ggctgtatta
     4141 ggatgcacgt tcagacctgt ctcactttag agtctgagtt tttcaccact gtctgcatta
     4201 tccttgttta gtcgtatgtc ctcacgaagt gtttgttgaa tggcaagatt gttcccacag
     4261 tctggctggc ctctgaggta tcactaacca tgatgaggat agcacccaat atttttgaat
     4321 actcagattg ctaggctctg taataatgtg atgtaagtga catgcgtcag gttaatctat
     4381 gtaatctgca gagctcaatg aggacgattt cccccgttct gcagattagg aaaccgaggc
     4441 tcagaaaggc tgagttaagt tgctcaagat cacacagcta aagagtgtat aagttgggat
     4501 ttagctgcca gttatctctt gaacagtgcg agcctgttct cttgatcact atgttattgt
     4561 ctacaaggaa aaaaaagatt aatttctacc tctgtccctt tcttctcgct gcccccttcc
     4621 ttagcttggg atgctttttc tgtgtctgtt tcttttcatc ctactctttc tgagaggccc
     4681 aggctgcgct cagactatgt ctgtccacat tgaacgttgc aaaattagtt actcgattta
     4741 tattttctta aactttactt gtagacatat cctcacgtta aagcatcacc tgatttaaga
     4801 ttggtgctcc atactgtaag agtagaccta tttgtctatc ttatttctga ccaaaggaat
     4861 ggaacagaga gcctagttat agacccgtgt atatctggac acctgattta tgacaaaggg
     4921 ggcactgctg ggcagtagga aatgaacggt cattttaata ataaacagtg ctgggtcagt
     4981 tggatgtcca caaggaaaga aatgatcttg accactacct cacgtcatgc acaaaaataa
     5041 attccggaga gatcatccat ctcaatgtga aagttaagac aaaataaaac ttcatttaca
     5101 aggtcacata gagtatcttc ataaccttga ggtagccata cattttttta aagaagacac
     5161 caagagcacc aaaaataaag gaaaagattg ataagttgga tgacattaaa gtgaggaact
     5221 tctcatcatc aaagacatca ataaaagaga gaaaaggcag gcagagtgga aaggatacac
     5281 acaataccta caaccggcaa gtggattcgt atccagagta cgtaaataat ccaacagaca
     5341 cgtaagaaaa agagcccctc tcccccccaa aaatgggcaa aagaacattc catacttata
     5401 aactgagttg tatacagttt tcttctccca attccaggtt ttaaccaatt tgtcctgggt
     5461 cattggcaca gcctggtggc tggccttggg aactgtctga tcccctggct catcttgaca
     5521 ttttctttta tgtctggact gtggaccctt cattttgcat gtcctgtgtc actcagctgt
     5581 ttttctgcca caagtgcctc ctttctcgtg aatacacaat acataggtct cttcctcttt
     5641 tcctttggct tgttaacttt tgaccatcta ttttaagact ctttctctcc ggcttcttct
     5701 cccttaccat ccctcctgcc tccaccccca cccctttttc gtttcccttt ttgtacctcc
     5761 ttgtttagcc taaagacttt tcgttgcaat ggttatccta aaatatctga aagcctttgg
     5821 cgggggggta ggctcgtacc gcgggctcca gaggcagagc gaagacttaa ggcgggtggt
     5881 tagctacctt gagagtgatg tcatctcagt tatgttccat tgtctgagac ctccaaaggt
     5941 gggccggggt gggggtgggg ggtggttact gaacgaagta gaggctgggc agtgccttgg
     6001 tcttagtgtt gtttacggag ggccctgtgc cttggatggg cagctggatt atgataatcc
     6061 tttccaatct tatcaacaaa gccccaaatg gagcctttga ggatgcccag agcagcaact
     6121 ctcatctggg agagagggcc tgtgtattgg aatgattctt ttgtccttct ggtgggtcag
     6181 gatggggcac aaatactagc actctaatgg tttcattcat agttaaaaat aattccgagg
     6241 tacccctcca cctgcagccc tcaacatggg gctggttgac aaccactgac ctgaagggca
     6301 ggatttccct tatttccttc tgtgccattc ttttcctcca ttagcagcat ctgtgaggtg
     6361 aatcctttcg gttatcttct tctttgtttc tttattttat ttaaatcccc actcgggcag
     6421 tgcttgttcc tatagcatat tttggacaca ttaccacaga gaaaacacaa tggaaactct
     6481 gcaggtatgt ttggacttca aaaattgggg gacagtgttt aaaattcaag agtttaatgt
     6541 agtaaatgta gatttttgcc ttctcctgaa aaattggacg atctgggtct ctactcccag
     6601 atggccccaa gcaggcagag caggggaggg gcttgtccct gctcctgaca cactccctcc
     6661 ccgtggcttg catcctttgc tacctgccga gtcccccaag gcattggggt ttgtctcttc
     6721 ctgaagtggg tgaaataggc tcttgtgggc tagcctggga acccaaccag tacgtttaat
     6781 atcgtttcag tgagaaaatg agttccggct tttaaagagc agactttgga aacatcagag
     6841 atgctaattt gggaatgctt gtagggtcct ctcacagaac ctgtacgtct tgaggtgatg
     6901 gcctgtgtct tatacttctt ctgcgcggaa tgtggcctta gcatctagta ggtacttaat
     6961 cagtgattta cctcctgggg ttaccgagtg ccctttgtct gctcctccct tccaggcggt
     7021 aaacagaaac accttctccc tgtggacctg aacctgtcag tgctgcccga gaccagaccg
     7081 ctgcctgatt tatctagaac acccactcga gcccttgata ctcgtgtgga gtttgagatc
     7141 agtcccctgt acagagctcc ctgtcttgag agaaatgact tctttcctga tgaaagatcc
     7201 agcccgtgtt caggaggccc taatgaggaa atgggaggac agagaggctg cactaagcct
     7261 gcgctgttgg ctgatgcccg ccgaactgga gttcgtggca attccagagt gcttgcattc
     7321 caaacccagg gcgagggctg ggtaaaagtc cagctcatcc cctttaaaga aaaaaattct
     7381 tcctctctga catttcgagg ttttgaccca gatcagtcag aggccacgga gagctcgcaa
     7441 tgtctggaga gtgtgtttag ttcccgaggc ctggagctgc agagaagccg gagcgagcca
     7501 gtgacctgct gggcttgagt tgaagccctg ccttttcaag tgtgccctgg cccagcctcc
     7561 ccagacctca cagggtggac ggaaggagcc agcaccttcc cctcactcca aagttatctt
     7621 taccccctga aatcaaacat cgcatgcagc accctgtaaa actgcttcct tgtaggcttg
     7681 agcgtgcttg ctgagtaaac atcctcccat gtttttggaa ctgaatccat ttctgcttcc
     7741 tggtcatccc atgcgggttc tttctgttct gggtgccatg cagaatcagg ttaatagaag
     7801 gcagacctag cgttgggcag gggcacctaa aatgacagtt tcaaccttag taaattgtaa
     7861 ggagagtaac agcgtcgtgg gaagaaagag aaaagactta gacgaaaaat gaaatgaaac
     7921 agagcctccc aaacatagtg ctgccatcat gctttgcaag tcagagttgg ttcctgccga
     7981 gccctgagac ggggaccttc ctttgcatgg gctcaagctc agttgtgcgg tggctgaacc
     8041 acagtcagcc tccgtctgta ggttgtgtgg ctgcgtctgg ccctcctgac cctaacttgc
     8101 tcttgccccg tctctcgtga cttatttgcc tcttctctct cacttccacc cacccgtgac
     8161 atctccatcg ccatggcatt gagcagccac gtcatccacc atgttcacgg ggtgatgggc
     8221 caactctgtg ctgagcccta cttccttctc gttctccctc ctgaagcagg aggctccctg
     8281 gcagagctca aagccctttg tttatttgat cctgggcgtc ttggataaat caggaatgtc
     8341 ctgacatgaa cttaggcatg tttttcttcc atggaaaagg aaactacggc aaatggtatt
     8401 taagtaggca gaggaccatt ccgggggact tgcgttggtg ccatcaaggc cacattcctt
     8461 tggtcatcag accagtaggt gacttcttta ttggcatgct ctaccctgga gcccagaagg
     8521 tgtgaatttg aagcactttc tcccctgctg agagcttggc acagatgctc tggacttctt
     8581 ttaaagccat ggagtaccat ggttgtcttc caggtggtct tctttctgct gggtgaaacc
     8641 ttggcccaga gtagttgctt gaagaaggct gcttgggagt tggggtacag gataaggttg
     8701 ctgcctggcc tctcattctc cagccgtctt gaagttgcaa tgatctcgat gtgtgatcta
     8761 ctttgagtca gctgccccag gacctgaaca cttccgatca gggctaggct cttgtggtac
     8821 aaccggtcgc cagaaacctt tgcgggtctg ctttctttgg atgtggcgtt gtgggaaccc
     8881 aagaattcct gagtctgtct aggtatatgg agtccagtga gtttagcatc tgagttgttc
     8941 tggaactatt tctgggtctg ggggcaggaa aatgttggga gctatgtgct ttgctgcagt
     9001 ggagacctgt cagtaaccaa aaaacaagcc cagtcagtct ccagagcatt ggtgggaacc
     9061 cccccccccc ccagctccct gtgagagttt ccaggtgtga atgcccatgt attaccatgg
     9121 caggggcagt gcggggtggg ctggcgggtg ctcatctcat ttggccacct gccctggaga
     9181 gaagaagcca gtcgttggcc actgcaggtc caggcttggc tgccgctctg ttttgctgct
     9241 tttcatgttg tcagaggatc ttcttgggaa caaatgactc agcaacctga atctctggga
     9301 ctgagtagcc taagtgcctt ttgagaagtg attggaccta tctgcacagg ccctaaaatt
     9361 ctgagccccg gaagagtgga gatccggact ggttttacta tagattcttc aggccgccgc
     9421 tcaatttggt ttctccaatt cctgccccag tagaaggagc tcactcatgg ggtaagcagg
     9481 caatgtttta attatgcttt ttgtccttag aaaattccag gaagaaaaaa gatcctggtc
     9541 tgtggccaaa aaagcagaaa acaacgaaaa tcagcgacgg ctgtaattct ggacttgtct
     9601 gtggcagaaa gagttaatag gacggtggtc tcagggtggg ggccgttata ttctcgggtc
     9661 caggagaagc tcacgtggtt caagaaaaga tgacgccaca tttagtgtgg gacagccctg
     9721 tctgggttct gggcgctgtc actcaaagag ttaagctagt cttatggctg gggagccctc
     9781 agggaaggcc tgagcctgca gggaccaggc cctctacgcc ccagagcagt gaggtctggg
     9841 gtaaaagagg ggctgagaag tgtggccagg aaagccgagt gtaggcccaa cttttttttt
     9901 tgccttgttt gaccagcctt ggcactgccc tctggctctc caggggaaaa gctgcagttc
     9961 tgctcttgca acacaaggag cagactggag aatttagatc tgcgtcacag agctcagaga
    10021 gagagagagg agagagggga gagagagagg gagagagaga gagagcgcga gcgctccgtc
    10081 gataggtctg ctagcaacag ccgtgctgca gcagagagag agagagaaat caagaaacaa
    10141 gtcatagcaa caccgggcac caggttctgc cagctcactt gccaagcgtt cagaaatctg
    10201 tcaggggccg gaggcctctg ggtagcctag gctaaggaga tgacacgcaa ggtggcacgg
    10261 gcggttcccg cggggaggag gcgacgatgg gtggtccgat gggcttcagg acttgatggc
    10321 gtaacccccg tcttccccca cgtacgtatt tgctgggatc gggggcgatg tctctgcgta
    10381 tgtgggtgct ctgtctttct caccttcttt cttgcttttt gctatttttt tttttttttt
    10441 tctgagggag gggttttttc cactttaatt tcttttccct tagtgtcagc tgctcaagcc
    10501 tgaccgaggt agaggaaaga ggagcaagcc gtccctggcg tcccacctga cctcccagcc
    10561 tctaccccca tttccttcta tcgggcagac agacagacac acaggctggt tttccaagtt
    10621 gtttgggtat cagtgtctgt ccgtccatat ggttctcagg tagaaggtac ggagtgagga
    10681 ggagaagtgt tgagaggaag gcgagagggg cagctttcta ggggttgcct tgttgaaaca
    10741 ttcggccctg ggaatccggg gctgttgggg agcaggtggg caggatgggg tgtgggctgc
    10801 gagaagtggg gtaaagctgg taggtttgtc actgcgtagt tggggaaagt ggggaatggt
    10861 gacgcagtca ctgttggatc ttgttagggg ctctgggggg acaggtagtg agggtcccag
    10921 gatctgtagg gccagctgag aggggttgag gatgagctga gaagggaagc tagcatttag
    10981 agattaaatg tcatcctttt ggcgttggaa agttgtttac cttgtgctct ctgtgtctcc
    11041 atgttggcac ccttccagtt cacatgtgat ggccttcctt gtactgctgc atcattaact
    11101 aagtgactga gctggccttc cattggccag gggagggctc tcactccaga cacttcctct
    11161 gattggtggg tggaccaatg gcaggtgaaa accttttttt gattggctga gggaagggta
    11221 tcaaatctga atttgcattt cacttgctta aaggggaggg gggggaagcc cagcagcttt
    11281 ctaaaatctg tttaggggtg tgcgtatgct cctgtgtctg tgcctgcttc tgactgaccg
    11341 gttgaagcct cttcctgtgc ctttttaact tcatgcactg taagggagag gagctgaggg
    11401 ctccccaaac ttttgtttcg gaggggcagg ggttgggaag atgggcacgc agagggttga
    11461 ccaaactgga agaaaatact cgttctttag tgggaatttt ccgatcagcc acacctcagc
    11521 gttgcggcaa aataaatctt ggctcccctg gaaacgcatg ggcaaggtag ggcagagctg
    11581 ctactgctgc tgttgccgcc accctgggct tcctgctgac tccgggctcc tccccgggga
    11641 caggagattt gcattgacgt cccaggctgt ccagagctga gcccattatg ggaaggacct
    11701 gccttctgga agctgctgct ccccggtgct tggaaagtga tactctccac gcctcctctc
    11761 cactgcaccc acctgcggca gtcccaccgt cttccgtgga cctctcctga ttaccttcac
    11821 aagaagcagc cctcctccca tccggccaga ctcccatacg cttcatgcct cttttgtgct
    11881 actgtagatg tgctgtggtt cttcgtgtat aagtcttatg tcacctatta gattgtgagc
    11941 cccaggaagc taggggaaag aagggaaaca tgtacctgcg tggtgctttc tgtttgccag
    12001 gtaccacatc cgtctggttc acggcggtta tttcatttat tcctcacctc aaccctgcga
    12061 ggagagtccc atggccggag gcagaggtga gataggttgt agcctcttca gagcaggata
    12121 agttccggaa tccagagatc agtggagacc gtagaagcag agacatggcg cttgggcaga
    12181 cctaggagct tttgcatcag gaaaacacca tggaaacgcc atgagcattg gtggtggcgg
    12241 agtgagggtt aaacagtgag ccttcctggg atccttttga tgccagtgtg tcgggagcct
    12301 ggagatggag cgctcagccg agtggccagg acgttctgtc aacatgaaag cagcaaaaac
    12361 agtttgtcgg ggctcagcgc tgaccccggg ctggtgtcat tttcaggaag ggcttggcac
    12421 aagaaagacc accgccaggc acgggattgg gggtgacgtc ggataactca gtaggcccct
    12481 atagaccctt gaattttaga atctgaaaag aaaatcagct gtttgtcttt tattagatga
    12541 gcttggcaaa caggatcact tcttgaactc ctctcactgg tccccaacaa gagacatctt
    12601 cccaggttca gaaaaccctt tgggatttct cggttgtggc ttattgcctt ggatggaggg
    12661 caggtccctt ctagggggca ggggtgggcc tggcagtcct agtgcccgtt atggggatat
    12721 ggagtcgtag gtttcctctg ctggcatcac gtgaagacgg tggatccaca tcacaggcct
    12781 tgagctgaag accagctctt gggcagccca cttcagcctc tcctttcctt attatctcaa
    12841 atcaaagtct tatcttctcc ccttcatctt cctcatttct ttcttaggcg cagtagtggg
    12901 cctgaagtcc ttgacctttg cgtctgtgtg tgtgtcatca tggcggctca gggttctaga
    12961 cttttcttga atctgcagca ttgcgctttg tgcgcgtgac gccccccccc ccccccgctc
    13021 cgccccgccc acccggcccc gccccaccag gccttcttcg gagcaagaga gaacatgggc
    13081 ctccatcgcc actgaacctc agccaagccg tcatccccag catctggcct cccttctctc
    13141 ctcccccgct ttcggccagt gtctggggtg gaggagcaaa caacttgtgg gaggagatgg
    13201 agggacagcc tggcctggag ctctctgcct cctttcctcg tgtgccattt ttcagcctca
    13261 cgcttcctgt ggatggatga tgccagcact gacatttgtc gccgagcgcc tcctctcccc
    13321 aaggacttcc ccgcgtgact cttttggggt ctggaaagag tggctctggg gccttgggag
    13381 ccagagggga cagggggacc tggcccaggt cacagcagac tgtgagacgg gcgaggggtg
    13441 ggagctggcc gaacccaccc aagcgcaaag gcagccccgg cccctttgcg tcatgtcttt
    13501 ttcagcctga ggagagagca acttgaccta aaaaaattgt atatatgtgg gtgttggatc
    13561 ctttgtgtct ctttgtccag aagctgtgca tgtgatgaga gcccaggtct ctgtactgta
    13621 cagagaactg ttgtccttca ggtttgtttt cagaaagatg tgatggatgg gccgtccttg
    13681 atgagaccgc gtgcccgctg ggactggcct tcctccagga tgctgggccc ggcgtggtgt
    13741 ttcttctgtc agtggacgag aactcagagg agttcagctc catgagtagg tgacaaactc
    13801 ctggagactc agctgacgat ggtgccggtg tgcagaagac agttgtcatc ctgtgggata
    13861 agcgtgtgcc cgtttgcatt tatttggaac aaaaaaagga gctgcctggc agcctggctc
    13921 tctgcaaggt gctgttgagc ccctggtttg tgtggttctg tgaccacaag tgctgatgga
    13981 tgtggcgcca tcccagtctt gtcggtgaac catcaccagc ctgcttattg gaaaccaggc
    14041 gcagcaagga agctaggatt caacgccctc cttccctgcc tcccagcccg cctccaaaag
    14101 aatttaatct gctggacaac aaacaatact gttataaaac tttgaaaaca agagggcgcg
    14161 gcctccctga caaggagaag ggcatgccgg gtaatgggcg agggagcctg ccaggcccga
    14221 gatggagcca ggcaagagcc cagttggctg ggcacctggg tgcccgcccc tgcccagccc
    14281 accagccgtg ccatccccag tccagaggag aaggaaccga aacaaaagtg ggggcagcgg
    14341 agctcttgaa aaggggaagt tgtcctgaga ctggcagaca gaggtcctga taacagaatg
    14401 aggctggcat agccgtgaag gtacagccac cagcctggcc agctgcaggg gaagcaggag
    14461 agaaaggtgc tccaagctgg ctttggactc cagacctacc ctctgtctgc ccagcctccc
    14521 accccccacc tagggaagtg gaaccaggtc atgggcatga cccggtccat gtgctctgcc
    14581 aggagccctg aaaccagcat tcccagcggc aggaagatgg atgatctggg ctccacttcc
    14641 ggcgctcctc ccccactctg gctggaactt gcgtcagtca tatcaaggag gccctcgggt
    14701 tgggtgccag ggagagcaag ctgcttccag ccgcatgaaa tcacctggct acttgcaact
    14761 aggggacaaa atcagcatct ggtttcagag aaccgagagt attttagaac tcgagagttg
    14821 gagcccaaac tcagccgtgc agtggagacc acagaggcac cagggtgctg gagaacaaag
    14881 caagtatcga agcaccggct ccttgcagaa ccaggcgtgc tctcatctcc acccaagttt
    14941 aatgtgttgt acagtcagta atacccaccc ccatctatgc agaaatattg cctaggacta
    15001 ccctcaccct caatcttcct cataattaag ttcaagaaca gaatgagacg gtagtccagc
    15061 tacagaacag gaggcagtgg gcagaagagt aggagcacag actttggagt cagacctgga
    15121 atcgacacca ttcactagtc atgggactgt ggacaagttt ttgaaccaca ctgaggatca
    15181 gtttcttctc ctgccaaaaa gggaatacta cctactccgc aagactgttg tgagaattca
    15241 agagcacagc ttggtgttca aattttattt ccttctcttc cctagagcag cacatgatgt
    15301 tatgtccagg aggcgtaaaa agtagaaggg tttatctaga gtcctgaaga attggtaggg
    15361 aaccggagag atgcagattc ttctttctcc tggttatggt atcagaggaa atacagacat
    15421 attttcttag cttcaaacaa ccaaaaaaga tggtgcaagt aggagatgag aaatctaatt
    15481 tgaacaccat ttgcaaacct aattttcagg cagaatttga aaacaacaca aaacaaaact
    15541 ccattctttt attagaggat tatctactta gtacaattat aagacactaa tctttttgtg
    15601 tcacagtaga gaataaataa gattggcaat taacggggtc atatttgaat gtcctgactg
    15661 ctcacgtatg gctgggaagg cggagcccgt gatctacgtg actaggacac atggaagtgt
    15721 tgccctggct caggtgaaac ccacctttgt gtagtgtcta gagcctcaca ggcagaaagg
    15781 gtgcttgttt cctgatgacg tgagaaaata tgggaaaatg ctttgcacac tgtgaaatag
    15841 tttacaaagc agggcaatac taatgtacat attaacccag tttagtaaca gctttggcta
    15901 ttttatttcg tcatatatat aataatctgt agggactggt tatggaatta agtaacttag
    15961 aattcatgag ttttgtattg cgattgtctg tgtaaattac cagctttgac tttcgtgttc
    16021 tttgagcatc actttgtaac tcttctctgt gcctttctaa tggatccata tatcatgtcc
    16081 cgtcacaagt ggaactgcaa gaagacacct ctgctcgggg cagaggctgg gtcttccgat
    16141 cgcatctccc ttctttcttc agtgagatcc tcttcttctg gaagctggtt tcacatggtg
    16201 gcttagattt ttccatcttt gtatctagca ccatttgaaa tcagtgtttt aggagtaaga
    16261 attgcagcac agcaaaaggc caaccgcaga ggagctgctg ctcgtgggat cagcttccct
    16321 ccttctgcca cctgagccgg ttcaagaaaa ggaagaactt gagaatcaaa gtacactctt
    16381 gagtgtgttg ggttgtggaa ggggacagtg cagggatggg gtcgtgttca atagaaactc
    16441 agaggcttga gcagagccag aggttgtgat tgtctttctg ttgacaggga gcggcaaccc
    16501 ctagcagtag cctgttggta aggcctttga gcacacgctt gggcaatgcc gggttgggta
    16561 cttgattgca ataggcaagg ggaggggtgt ggaccagaag gactatctca tcacatcagc
    16621 actgtccacc tgctcctaga tgccgtgaaa cattcagctg cagttgccga gcagctgaaa
    16681 tcagacttgc cacctgcact gtcaaggtgc cggaccccac cgagcaccac tggacccatc
    16741 tcttacacag gctgaccgat ttctcctggt gttcagagtc tgtttttgtc tagcaccatt
    16801 tgaaatcggt tatgatgtag ggggaaaagc agcagcctcg aggcctcatg ccaagtctgg
    16861 tcagcaacag cctggggctt cctggaagat ggatgcgcag agagaggggg aggaaggtta
    16921 tgctttttcc tgctagcttc tttaactaca tctacaatac tttatgcacg ggtaatagat
    16981 cagttaatgg atttttcaga agcaaatcac taaaatttat ctgatgtcct cggtttgccg
    17041 aaatgtggta gtgatgtaaa ctataaattg gttgctgttg aattatcttt cagtcatgca
    17101 tcctgacctt aataaatgct ttactgtaca caatt
//
LOCUS       XR_004351838           16381 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X28, misc_RNA.
ACCESSION   XR_004351838
VERSION     XR_004351838.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16381
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16381
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16381
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X28"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggagattt gcattgacgt cccaggctgt ccagagctga gcccattatg ggaaggacct
    11221 gccttctgga agctgctgct ccccggtgct tggaaaggta ccacatccgt ctggttcacg
    11281 gcggttattt catttattcc tcacctcaac cctgcgagga gagtcccatg gccggttcac
    11341 ccaagacaat ggggattttt tgtagctgaa attgatggac taacaaactt cagttttcct
    11401 ggtctccttc ctctcgaaac aggaggcaga ggagcttttg catcaggaaa acaccatgga
    11461 aacgccatga gcattggtgg tggcggagtg agggttaaac agtgagcctt cctgggatcc
    11521 ttttgatgcc agtgtgtcgg gagcctggag atggagcgct cagccgagtg gccaggacgt
    11581 tctgtcaaca tgaaagcagc aaaaacagtt tgtcggggct cagcgctgac cccgggctgg
    11641 tgtcattttc aggaagggct tggcacaaga aagaccaccg ccaggcacgg gattgggggt
    11701 gacgtcggat aactcagtag gcccctatag acccttgaat tttagaatct gaaaagaaaa
    11761 tcagctgttt gtcttttatt agatgagctt ggcaaacagg atcacttctt gaactcctct
    11821 cactggtccc caacaagaga catcttccca ggttcagaaa accctttggg atttctcggt
    11881 tgtggcttat tgccttggat ggagggcagg tcccttctag ggggcagggg tgggcctggc
    11941 agtcctagtg cccgttatgg ggatatggag tcgtaggttt cctctgctgg catcacgtga
    12001 agacggtgga tccacatcac aggccttgag ctgaagacca gctcttgggc agcccacttc
    12061 agcctctcct ttccttatta tctcaaatca aagtcttatc ttctcccctt catcttcctc
    12121 atttctttct taggcgcagt agtgggcctg aagtccttga cctttgcgtc tgtgtgtgtg
    12181 tcatcatggc ggctcagggt tctagacttt tcttgaatct gcagcattgc gctttgtgcg
    12241 cgtgacgccc cccccccccc ccgctccgcc ccgcccaccc ggccccgccc caccaggcct
    12301 tcttcggagc aagagagaac atgggcctcc atcgccactg aacctcagcc aagccgtcat
    12361 ccccagcatc tggcctccct tctctcctcc cccgctttcg gccagtgtct ggggtggagg
    12421 agcaaacaac ttgtgggagg agatggaggg acagcctggc ctggagctct ctgcctcctt
    12481 tcctcgtgtg ccatttttca gcctcacgct tcctgtggat ggatgatgcc agcactgaca
    12541 tttgtcgccg agcgcctcct ctccccaagg acttccccgc gtgactcttt tggggtctgg
    12601 aaagagtggc tctggggcct tgggagccag aggggacagg gggacctggc ccaggtcaca
    12661 gcagactgtg agacgggcga ggggtgggag ctggccgaac ccacccaagc gcaaaggcag
    12721 ccccggcccc tttgcgtcat gtctttttca gcctgaggag agagcaactt gacctaaaaa
    12781 aattgtatat atgtgggtgt tggatccttt gtgtctcttt gtccagaagc tgtgcatgtg
    12841 atgagagccc aggtctctgt actgtacaga gaactgttgt ccttcaggtt tgttttcaga
    12901 aagatgtgat ggatgggccg tccttgatga gaccgcgtgc ccgctgggac tggccttcct
    12961 ccaggatgct gggcccggcg tggtgtttct tctgtcagtg gacgagaact cagaggagtt
    13021 cagctccatg agtaggtgac aaactcctgg agactcagct gacgatggtg ccggtgtgca
    13081 gaagacagtt gtcatcctgt gggataagcg tgtgcccgtt tgcatttatt tggaacaaaa
    13141 aaaggagctg cctggcagcc tggctctctg caaggtgctg ttgagcccct ggtttgtgtg
    13201 gttctgtgac cacaagtgct gatggatgtg gcgccatccc agtcttgtcg gtgaaccatc
    13261 accagcctgc ttattggaaa ccaggcgcag caaggaagct aggattcaac gccctccttc
    13321 cctgcctccc agcccgcctc caaaagaatt taatctgctg gacaacaaac aatactgtta
    13381 taaaactttg aaaacaagag ggcgcggcct ccctgacaag gagaagggca tgccgggtaa
    13441 tgggcgaggg agcctgccag gcccgagatg gagccaggca agagcccagt tggctgggca
    13501 cctgggtgcc cgcccctgcc cagcccacca gccgtgccat ccccagtcca gaggagaagg
    13561 aaccgaaaca aaagtggggg cagcggagct cttgaaaagg ggaagttgtc ctgagactgg
    13621 cagacagagg tcctgataac agaatgaggc tggcatagcc gtgaaggtac agccaccagc
    13681 ctggccagct gcaggggaag caggagagaa aggtgctcca agctggcttt ggactccaga
    13741 cctaccctct gtctgcccag cctcccaccc cccacctagg gaagtggaac caggtcatgg
    13801 gcatgacccg gtccatgtgc tctgccagga gccctgaaac cagcattccc agcggcagga
    13861 agatggatga tctgggctcc acttccggcg ctcctccccc actctggctg gaacttgcgt
    13921 cagtcatatc aaggaggccc tcgggttggg tgccagggag agcaagctgc ttccagccgc
    13981 atgaaatcac ctggctactt gcaactaggg gacaaaatca gcatctggtt tcagagaacc
    14041 gagagtattt tagaactcga gagttggagc ccaaactcag ccgtgcagtg gagaccacag
    14101 aggcaccagg gtgctggaga acaaagcaag tatcgaagca ccggctcctt gcagaaccag
    14161 gcgtgctctc atctccaccc aagtttaatg tgttgtacag tcagtaatac ccacccccat
    14221 ctatgcagaa atattgccta ggactaccct caccctcaat cttcctcata attaagttca
    14281 agaacagaat gagacggtag tccagctaca gaacaggagg cagtgggcag aagagtagga
    14341 gcacagactt tggagtcaga cctggaatcg acaccattca ctagtcatgg gactgtggac
    14401 aagtttttga accacactga ggatcagttt cttctcctgc caaaaaggga atactaccta
    14461 ctccgcaaga ctgttgtgag aattcaagag cacagcttgg tgttcaaatt ttatttcctt
    14521 ctcttcccta gagcagcaca tgatgttatg tccaggaggc gtaaaaagta gaagggttta
    14581 tctagagtcc tgaagaattg gtagggaacc ggagagatgc agattcttct ttctcctggt
    14641 tatggtatca gaggaaatac agacatattt tcttagcttc aaacaaccaa aaaagatggt
    14701 gcaagtagga gatgagaaat ctaatttgaa caccatttgc aaacctaatt ttcaggcaga
    14761 atttgaaaac aacacaaaac aaaactccat tcttttatta gaggattatc tacttagtac
    14821 aattataaga cactaatctt tttgtgtcac agtagagaat aaataagatt ggcaattaac
    14881 ggggtcatat ttgaatgtcc tgactgctca cgtatggctg ggaaggcgga gcccgtgatc
    14941 tacgtgacta ggacacatgg aagtgttgcc ctggctcagg tgaaacccac ctttgtgtag
    15001 tgtctagagc ctcacaggca gaaagggtgc ttgtttcctg atgacgtgag aaaatatggg
    15061 aaaatgcttt gcacactgtg aaatagttta caaagcaggg caatactaat gtacatatta
    15121 acccagttta gtaacagctt tggctatttt atttcgtcat atatataata atctgtaggg
    15181 actggttatg gaattaagta acttagaatt catgagtttt gtattgcgat tgtctgtgta
    15241 aattaccagc tttgactttc gtgttctttg agcatcactt tgtaactctt ctctgtgcct
    15301 ttctaatgga tccatatatc atgtcccgtc acaagtggaa ctgcaagaag acacctctgc
    15361 tcggggcaga ggctgggtct tccgatcgca tctcccttct ttcttcagtg agatcctctt
    15421 cttctggaag ctggtttcac atggtggctt agatttttcc atctttgtat ctagcaccat
    15481 ttgaaatcag tgttttagga gtaagaattg cagcacagca aaaggccaac cgcagaggag
    15541 ctgctgctcg tgggatcagc ttccctcctt ctgccacctg agccggttca agaaaaggaa
    15601 gaacttgaga atcaaagtac actcttgagt gtgttgggtt gtggaagggg acagtgcagg
    15661 gatggggtcg tgttcaatag aaactcagag gcttgagcag agccagaggt tgtgattgtc
    15721 tttctgttga cagggagcgg caacccctag cagtagcctg ttggtaaggc ctttgagcac
    15781 acgcttgggc aatgccgggt tgggtacttg attgcaatag gcaaggggag gggtgtggac
    15841 cagaaggact atctcatcac atcagcactg tccacctgct cctagatgcc gtgaaacatt
    15901 cagctgcagt tgccgagcag ctgaaatcag acttgccacc tgcactgtca aggtgccgga
    15961 ccccaccgag caccactgga cccatctctt acacaggctg accgatttct cctggtgttc
    16021 agagtctgtt tttgtctagc accatttgaa atcggttatg atgtaggggg aaaagcagca
    16081 gcctcgaggc ctcatgccaa gtctggtcag caacagcctg gggcttcctg gaagatggat
    16141 gcgcagagag agggggagga aggttatgct ttttcctgct agcttcttta actacatcta
    16201 caatacttta tgcacgggta atagatcagt taatggattt ttcagaagca aatcactaaa
    16261 atttatctga tgtcctcggt ttgccgaaat gtggtagtga tgtaaactat aaattggttg
    16321 ctgttgaatt atctttcagt catgcatcct gaccttaata aatgctttac tgtacacaat
    16381 t
//
LOCUS       XR_004351839           16871 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X29, misc_RNA.
ACCESSION   XR_004351839
VERSION     XR_004351839.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16871
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16871
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16871
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X29"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaaggtac cacatccgtc tggttcacgg
    11761 cggttatttc atttattcct cacctcaacc ctgcgaggag agtcccatgg ccggaggcag
    11821 aggtgagata ggttgtagcc tcttcagagc aggataagtt ccggaatcca gagatcagtg
    11881 gagaccgtag aagcagagac atggcgcttg ggcagaccta ggagcttttg catcaggaaa
    11941 acaccatgga aacgccatga gcattggtgg tggcggagtg agggttaaac agtgagcctt
    12001 cctgggatcc ttttgatgcc agtgtgtcgg gagcctggag atggagcgct cagccgagtg
    12061 gccaggacgt tctgtcaaca tgaaagcagc aaaaacagtt tgtcggggct cagcgctgac
    12121 cccgggctgg tgtcattttc aggaagggct tggcacaaga aagaccaccg ccaggcacgg
    12181 gattgggggt gacgtcggat aactcagtag gcccctatag acccttgaat tttagaatct
    12241 gaaaagaaaa tcagctgttt gtcttttatt agatgagctt ggcaaacagg atcacttctt
    12301 gaactcctct cactggtccc caacaagaga catcttccca ggttcagaaa accctttggg
    12361 atttctcggt tgtggcttat tgccttggat ggagggcagg tcccttctag ggggcagggg
    12421 tgggcctggc agtcctagtg cccgttatgg ggatatggag tcgtaggttt cctctgctgg
    12481 catcacgtga agacggtgga tccacatcac aggccttgag ctgaagacca gctcttgggc
    12541 agcccacttc agcctctcct ttccttatta tctcaaatca aagtcttatc ttctcccctt
    12601 catcttcctc atttctttct taggcgcagt agtgggcctg aagtccttga cctttgcgtc
    12661 tgtgtgtgtg tcatcatggc ggctcagggt tctagacttt tcttgaatct gcagcattgc
    12721 gctttgtgcg cgtgacgccc cccccccccc ccgctccgcc ccgcccaccc ggccccgccc
    12781 caccaggcct tcttcggagc aagagagaac atgggcctcc atcgccactg aacctcagcc
    12841 aagccgtcat ccccagcatc tggcctccct tctctcctcc cccgctttcg gccagtgtct
    12901 ggggtggagg agcaaacaac ttgtgggagg agatggaggg acagcctggc ctggagctct
    12961 ctgcctcctt tcctcgtgtg ccatttttca gcctcacgct tcctgtggat ggatgatgcc
    13021 agcactgaca tttgtcgccg agcgcctcct ctccccaagg acttccccgc gtgactcttt
    13081 tggggtctgg aaagagtggc tctggggcct tgggagccag aggggacagg gggacctggc
    13141 ccaggtcaca gcagactgtg agacgggcga ggggtgggag ctggccgaac ccacccaagc
    13201 gcaaaggcag ccccggcccc tttgcgtcat gtctttttca gcctgaggag agagcaactt
    13261 gacctaaaaa aattgtatat atgtgggtgt tggatccttt gtgtctcttt gtccagaagc
    13321 tgtgcatgtg atgagagccc aggtctctgt actgtacaga gaactgttgt ccttcaggtt
    13381 tgttttcaga aagatgtgat ggatgggccg tccttgatga gaccgcgtgc ccgctgggac
    13441 tggccttcct ccaggatgct gggcccggcg tggtgtttct tctgtcagtg gacgagaact
    13501 cagaggagtt cagctccatg agtaggtgac aaactcctgg agactcagct gacgatggtg
    13561 ccggtgtgca gaagacagtt gtcatcctgt gggataagcg tgtgcccgtt tgcatttatt
    13621 tggaacaaaa aaaggagctg cctggcagcc tggctctctg caaggtgctg ttgagcccct
    13681 ggtttgtgtg gttctgtgac cacaagtgct gatggatgtg gcgccatccc agtcttgtcg
    13741 gtgaaccatc accagcctgc ttattggaaa ccaggcgcag caaggaagct aggattcaac
    13801 gccctccttc cctgcctccc agcccgcctc caaaagaatt taatctgctg gacaacaaac
    13861 aatactgtta taaaactttg aaaacaagag ggcgcggcct ccctgacaag gagaagggca
    13921 tgccgggtaa tgggcgaggg agcctgccag gcccgagatg gagccaggca agagcccagt
    13981 tggctgggca cctgggtgcc cgcccctgcc cagcccacca gccgtgccat ccccagtcca
    14041 gaggagaagg aaccgaaaca aaagtggggg cagcggagct cttgaaaagg ggaagttgtc
    14101 ctgagactgg cagacagagg tcctgataac agaatgaggc tggcatagcc gtgaaggtac
    14161 agccaccagc ctggccagct gcaggggaag caggagagaa aggtgctcca agctggcttt
    14221 ggactccaga cctaccctct gtctgcccag cctcccaccc cccacctagg gaagtggaac
    14281 caggtcatgg gcatgacccg gtccatgtgc tctgccagga gccctgaaac cagcattccc
    14341 agcggcagga agatggatga tctgggctcc acttccggcg ctcctccccc actctggctg
    14401 gaacttgcgt cagtcatatc aaggaggccc tcgggttggg tgccagggag agcaagctgc
    14461 ttccagccgc atgaaatcac ctggctactt gcaactaggg gacaaaatca gcatctggtt
    14521 tcagagaacc gagagtattt tagaactcga gagttggagc ccaaactcag ccgtgcagtg
    14581 gagaccacag aggcaccagg gtgctggaga acaaagcaag tatcgaagca ccggctcctt
    14641 gcagaaccag gcgtgctctc atctccaccc aagtttaatg tgttgtacag tcagtaatac
    14701 ccacccccat ctatgcagaa atattgccta ggactaccct caccctcaat cttcctcata
    14761 attaagttca agaacagaat gagacggtag tccagctaca gaacaggagg cagtgggcag
    14821 aagagtagga gcacagactt tggagtcaga cctggaatcg acaccattca ctagtcatgg
    14881 gactgtggac aagtttttga accacactga ggatcagttt cttctcctgc caaaaaggga
    14941 atactaccta ctccgcaaga ctgttgtgag aattcaagag cacagcttgg tgttcaaatt
    15001 ttatttcctt ctcttcccta gagcagcaca tgatgttatg tccaggaggc gtaaaaagta
    15061 gaagggttta tctagagtcc tgaagaattg gtagggaacc ggagagatgc agattcttct
    15121 ttctcctggt tatggtatca gaggaaatac agacatattt tcttagcttc aaacaaccaa
    15181 aaaagatggt gcaagtagga gatgagaaat ctaatttgaa caccatttgc aaacctaatt
    15241 ttcaggcaga atttgaaaac aacacaaaac aaaactccat tcttttatta gaggattatc
    15301 tacttagtac aattataaga cactaatctt tttgtgtcac agtagagaat aaataagatt
    15361 ggcaattaac ggggtcatat ttgaatgtcc tgactgctca cgtatggctg ggaaggcgga
    15421 gcccgtgatc tacgtgacta ggacacatgg aagtgttgcc ctggctcagg tgaaacccac
    15481 ctttgtgtag tgtctagagc ctcacaggca gaaagggtgc ttgtttcctg atgacgtgag
    15541 aaaatatggg aaaatgcttt gcacactgtg aaatagttta caaagcaggg caatactaat
    15601 gtacatatta acccagttta gtaacagctt tggctatttt atttcgtcat atatataata
    15661 atctgtaggg actggttatg gaattaagta acttagaatt catgagtttt gtattgcgat
    15721 tgtctgtgta aattaccagc tttgactttc gtgttctttg agcatcactt tgtaactctt
    15781 ctctgtgcct ttctaatgga tccatatatc atgtcccgtc acaagtggaa ctgcaagaag
    15841 acacctctgc tcggggcaga ggctgggtct tccgatcgca tctcccttct ttcttcagtg
    15901 agatcctctt cttctggaag ctggtttcac atggtggctt agatttttcc atctttgtat
    15961 ctagcaccat ttgaaatcag tgttttagga gtaagaattg cagcacagca aaaggccaac
    16021 cgcagaggag ctgctgctcg tgggatcagc ttccctcctt ctgccacctg agccggttca
    16081 agaaaaggaa gaacttgaga atcaaagtac actcttgagt gtgttgggtt gtggaagggg
    16141 acagtgcagg gatggggtcg tgttcaatag aaactcagag gcttgagcag agccagaggt
    16201 tgtgattgtc tttctgttga cagggagcgg caacccctag cagtagcctg ttggtaaggc
    16261 ctttgagcac acgcttgggc aatgccgggt tgggtacttg attgcaatag gcaaggggag
    16321 gggtgtggac cagaaggact atctcatcac atcagcactg tccacctgct cctagatgcc
    16381 gtgaaacatt cagctgcagt tgccgagcag ctgaaatcag acttgccacc tgcactgtca
    16441 aggtgccgga ccccaccgag caccactgga cccatctctt acacaggctg accgatttct
    16501 cctggtgttc agagtctgtt tttgtctagc accatttgaa atcggttatg atgtaggggg
    16561 aaaagcagca gcctcgaggc ctcatgccaa gtctggtcag caacagcctg gggcttcctg
    16621 gaagatggat gcgcagagag agggggagga aggttatgct ttttcctgct agcttcttta
    16681 actacatcta caatacttta tgcacgggta atagatcagt taatggattt ttcagaagca
    16741 aatcactaaa atttatctga tgtcctcggt ttgccgaaat gtggtagtga tgtaaactat
    16801 aaattggttg ctgttgaatt atctttcagt catgcatcct gaccttaata aatgctttac
    16861 tgtacacaat t
//
LOCUS       XR_004351840           16644 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X30, misc_RNA.
ACCESSION   XR_004351840
VERSION     XR_004351840.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16644
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16644
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16644
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X30"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggagattt gcattgacgt cccaggctgt ccagagctga gcccattatg ggaaggacct
    11221 gccttctgga agctgctgct ccccggtgct tggaaagtga tactctccac gcctcctctc
    11281 cactgcaccc acctgcggca gtcccaccgt cttccgtgga cctctcctga ttaccttcac
    11341 aagaagcagc cctcctccca tccggccaga ctcccatacg cttcatgcct cttttgtgct
    11401 actgtagatg tgctgtggtt cttcgtgtat aagtcttatg tcacctatta gattgtgagc
    11461 cccaggaagc taggggaaag aagggaaaca tgtacctgcg tggtgctttc tgtttgccag
    11521 gtaccacatc cgtctggttc acggcggtta tttcatttat tcctcacctc aaccctgcga
    11581 ggagagtccc atggccggtt cacccaagac aatggggatt ttttgtagct gaaattgatg
    11641 gactaacaaa cttcagtttt cctggtctcc ttcctctcga aacaggaggc agaggagctt
    11701 ttgcatcagg aaaacaccat ggaaacgcca tgagcattgg tggtggcgga gtgagggtta
    11761 aacagtgagc cttcctggga tccttttgat gccagtgtgt cgggagcctg gagatggagc
    11821 gctcagccga gtggccagga cgttctgtca acatgaaagc agcaaaaaca gtttgtcggg
    11881 gctcagcgct gaccccgggc tggtgtcatt ttcaggaagg gcttggcaca agaaagacca
    11941 ccgccaggca cgggattggg ggtgacgtcg gataactcag taggccccta tagacccttg
    12001 aattttagaa tctgaaaaga aaatcagctg tttgtctttt attagatgag cttggcaaac
    12061 aggatcactt cttgaactcc tctcactggt ccccaacaag agacatcttc ccaggttcag
    12121 aaaacccttt gggatttctc ggttgtggct tattgccttg gatggagggc aggtcccttc
    12181 tagggggcag gggtgggcct ggcagtccta gtgcccgtta tggggatatg gagtcgtagg
    12241 tttcctctgc tggcatcacg tgaagacggt ggatccacat cacaggcctt gagctgaaga
    12301 ccagctcttg ggcagcccac ttcagcctct cctttcctta ttatctcaaa tcaaagtctt
    12361 atcttctccc cttcatcttc ctcatttctt tcttaggcgc agtagtgggc ctgaagtcct
    12421 tgacctttgc gtctgtgtgt gtgtcatcat ggcggctcag ggttctagac ttttcttgaa
    12481 tctgcagcat tgcgctttgt gcgcgtgacg cccccccccc cccccgctcc gccccgccca
    12541 cccggccccg ccccaccagg ccttcttcgg agcaagagag aacatgggcc tccatcgcca
    12601 ctgaacctca gccaagccgt catccccagc atctggcctc ccttctctcc tcccccgctt
    12661 tcggccagtg tctggggtgg aggagcaaac aacttgtggg aggagatgga gggacagcct
    12721 ggcctggagc tctctgcctc ctttcctcgt gtgccatttt tcagcctcac gcttcctgtg
    12781 gatggatgat gccagcactg acatttgtcg ccgagcgcct cctctcccca aggacttccc
    12841 cgcgtgactc ttttggggtc tggaaagagt ggctctgggg ccttgggagc cagaggggac
    12901 agggggacct ggcccaggtc acagcagact gtgagacggg cgaggggtgg gagctggccg
    12961 aacccaccca agcgcaaagg cagccccggc ccctttgcgt catgtctttt tcagcctgag
    13021 gagagagcaa cttgacctaa aaaaattgta tatatgtggg tgttggatcc tttgtgtctc
    13081 tttgtccaga agctgtgcat gtgatgagag cccaggtctc tgtactgtac agagaactgt
    13141 tgtccttcag gtttgttttc agaaagatgt gatggatggg ccgtccttga tgagaccgcg
    13201 tgcccgctgg gactggcctt cctccaggat gctgggcccg gcgtggtgtt tcttctgtca
    13261 gtggacgaga actcagagga gttcagctcc atgagtaggt gacaaactcc tggagactca
    13321 gctgacgatg gtgccggtgt gcagaagaca gttgtcatcc tgtgggataa gcgtgtgccc
    13381 gtttgcattt atttggaaca aaaaaaggag ctgcctggca gcctggctct ctgcaaggtg
    13441 ctgttgagcc cctggtttgt gtggttctgt gaccacaagt gctgatggat gtggcgccat
    13501 cccagtcttg tcggtgaacc atcaccagcc tgcttattgg aaaccaggcg cagcaaggaa
    13561 gctaggattc aacgccctcc ttccctgcct cccagcccgc ctccaaaaga atttaatctg
    13621 ctggacaaca aacaatactg ttataaaact ttgaaaacaa gagggcgcgg cctccctgac
    13681 aaggagaagg gcatgccggg taatgggcga gggagcctgc caggcccgag atggagccag
    13741 gcaagagccc agttggctgg gcacctgggt gcccgcccct gcccagccca ccagccgtgc
    13801 catccccagt ccagaggaga aggaaccgaa acaaaagtgg gggcagcgga gctcttgaaa
    13861 aggggaagtt gtcctgagac tggcagacag aggtcctgat aacagaatga ggctggcata
    13921 gccgtgaagg tacagccacc agcctggcca gctgcagggg aagcaggaga gaaaggtgct
    13981 ccaagctggc tttggactcc agacctaccc tctgtctgcc cagcctccca ccccccacct
    14041 agggaagtgg aaccaggtca tgggcatgac ccggtccatg tgctctgcca ggagccctga
    14101 aaccagcatt cccagcggca ggaagatgga tgatctgggc tccacttccg gcgctcctcc
    14161 cccactctgg ctggaacttg cgtcagtcat atcaaggagg ccctcgggtt gggtgccagg
    14221 gagagcaagc tgcttccagc cgcatgaaat cacctggcta cttgcaacta ggggacaaaa
    14281 tcagcatctg gtttcagaga accgagagta ttttagaact cgagagttgg agcccaaact
    14341 cagccgtgca gtggagacca cagaggcacc agggtgctgg agaacaaagc aagtatcgaa
    14401 gcaccggctc cttgcagaac caggcgtgct ctcatctcca cccaagttta atgtgttgta
    14461 cagtcagtaa tacccacccc catctatgca gaaatattgc ctaggactac cctcaccctc
    14521 aatcttcctc ataattaagt tcaagaacag aatgagacgg tagtccagct acagaacagg
    14581 aggcagtggg cagaagagta ggagcacaga ctttggagtc agacctggaa tcgacaccat
    14641 tcactagtca tgggactgtg gacaagtttt tgaaccacac tgaggatcag tttcttctcc
    14701 tgccaaaaag ggaatactac ctactccgca agactgttgt gagaattcaa gagcacagct
    14761 tggtgttcaa attttatttc cttctcttcc ctagagcagc acatgatgtt atgtccagga
    14821 ggcgtaaaaa gtagaagggt ttatctagag tcctgaagaa ttggtaggga accggagaga
    14881 tgcagattct tctttctcct ggttatggta tcagaggaaa tacagacata ttttcttagc
    14941 ttcaaacaac caaaaaagat ggtgcaagta ggagatgaga aatctaattt gaacaccatt
    15001 tgcaaaccta attttcaggc agaatttgaa aacaacacaa aacaaaactc cattctttta
    15061 ttagaggatt atctacttag tacaattata agacactaat ctttttgtgt cacagtagag
    15121 aataaataag attggcaatt aacggggtca tatttgaatg tcctgactgc tcacgtatgg
    15181 ctgggaaggc ggagcccgtg atctacgtga ctaggacaca tggaagtgtt gccctggctc
    15241 aggtgaaacc cacctttgtg tagtgtctag agcctcacag gcagaaaggg tgcttgtttc
    15301 ctgatgacgt gagaaaatat gggaaaatgc tttgcacact gtgaaatagt ttacaaagca
    15361 gggcaatact aatgtacata ttaacccagt ttagtaacag ctttggctat tttatttcgt
    15421 catatatata ataatctgta gggactggtt atggaattaa gtaacttaga attcatgagt
    15481 tttgtattgc gattgtctgt gtaaattacc agctttgact ttcgtgttct ttgagcatca
    15541 ctttgtaact cttctctgtg cctttctaat ggatccatat atcatgtccc gtcacaagtg
    15601 gaactgcaag aagacacctc tgctcggggc agaggctggg tcttccgatc gcatctccct
    15661 tctttcttca gtgagatcct cttcttctgg aagctggttt cacatggtgg cttagatttt
    15721 tccatctttg tatctagcac catttgaaat cagtgtttta ggagtaagaa ttgcagcaca
    15781 gcaaaaggcc aaccgcagag gagctgctgc tcgtgggatc agcttccctc cttctgccac
    15841 ctgagccggt tcaagaaaag gaagaacttg agaatcaaag tacactcttg agtgtgttgg
    15901 gttgtggaag gggacagtgc agggatgggg tcgtgttcaa tagaaactca gaggcttgag
    15961 cagagccaga ggttgtgatt gtctttctgt tgacagggag cggcaacccc tagcagtagc
    16021 ctgttggtaa ggcctttgag cacacgcttg ggcaatgccg ggttgggtac ttgattgcaa
    16081 taggcaaggg gaggggtgtg gaccagaagg actatctcat cacatcagca ctgtccacct
    16141 gctcctagat gccgtgaaac attcagctgc agttgccgag cagctgaaat cagacttgcc
    16201 acctgcactg tcaaggtgcc ggaccccacc gagcaccact ggacccatct cttacacagg
    16261 ctgaccgatt tctcctggtg ttcagagtct gtttttgtct agcaccattt gaaatcggtt
    16321 atgatgtagg gggaaaagca gcagcctcga ggcctcatgc caagtctggt cagcaacagc
    16381 ctggggcttc ctggaagatg gatgcgcaga gagaggggga ggaaggttat gctttttcct
    16441 gctagcttct ttaactacat ctacaatact ttatgcacgg gtaatagatc agttaatgga
    16501 tttttcagaa gcaaatcact aaaatttatc tgatgtcctc ggtttgccga aatgtggtag
    16561 tgatgtaaac tataaattgg ttgctgttga attatctttc agtcatgcat cctgacctta
    16621 ataaatgctt tactgtacac aatt
//
LOCUS       XR_004351841           16476 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X31, misc_RNA.
ACCESSION   XR_004351841
VERSION     XR_004351841.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16476
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16476
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16476
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X31"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggtgggtg gaccaatggc agtgggaatt ttccgatcag ccacacctca gcgttgcggc
    11221 aaaataaatc ttggctcccc tggaaacgca tgggcaagga gatttgcatt gacgtcccag
    11281 gctgtccaga gctgagccca ttatgggaag gacctgcctt ctggaagctg ctgctccccg
    11341 gtgcttggaa aggtaccaca tccgtctggt tcacggcggt tatttcattt attcctcacc
    11401 tcaaccctgc gaggagagtc ccatggccgg ttcacccaag acaatgggga ttttttgtag
    11461 ctgaaattga tggactaaca aacttcagtt ttcctggtct ccttcctctc gaaacaggag
    11521 gcagaggagc ttttgcatca ggaaaacacc atggaaacgc catgagcatt ggtggtggcg
    11581 gagtgagggt taaacagtga gccttcctgg gatccttttg atgccagtgt gtcgggagcc
    11641 tggagatgga gcgctcagcc gagtggccag gacgttctgt caacatgaaa gcagcaaaaa
    11701 cagtttgtcg gggctcagcg ctgaccccgg gctggtgtca ttttcaggaa gggcttggca
    11761 caagaaagac caccgccagg cacgggattg ggggtgacgt cggataactc agtaggcccc
    11821 tatagaccct tgaattttag aatctgaaaa gaaaatcagc tgtttgtctt ttattagatg
    11881 agcttggcaa acaggatcac ttcttgaact cctctcactg gtccccaaca agagacatct
    11941 tcccaggttc agaaaaccct ttgggatttc tcggttgtgg cttattgcct tggatggagg
    12001 gcaggtccct tctagggggc aggggtgggc ctggcagtcc tagtgcccgt tatggggata
    12061 tggagtcgta ggtttcctct gctggcatca cgtgaagacg gtggatccac atcacaggcc
    12121 ttgagctgaa gaccagctct tgggcagccc acttcagcct ctcctttcct tattatctca
    12181 aatcaaagtc ttatcttctc cccttcatct tcctcatttc tttcttaggc gcagtagtgg
    12241 gcctgaagtc cttgaccttt gcgtctgtgt gtgtgtcatc atggcggctc agggttctag
    12301 acttttcttg aatctgcagc attgcgcttt gtgcgcgtga cgcccccccc cccccccgct
    12361 ccgccccgcc cacccggccc cgccccacca ggccttcttc ggagcaagag agaacatggg
    12421 cctccatcgc cactgaacct cagccaagcc gtcatcccca gcatctggcc tcccttctct
    12481 cctcccccgc tttcggccag tgtctggggt ggaggagcaa acaacttgtg ggaggagatg
    12541 gagggacagc ctggcctgga gctctctgcc tcctttcctc gtgtgccatt tttcagcctc
    12601 acgcttcctg tggatggatg atgccagcac tgacatttgt cgccgagcgc ctcctctccc
    12661 caaggacttc cccgcgtgac tcttttgggg tctggaaaga gtggctctgg ggccttggga
    12721 gccagagggg acagggggac ctggcccagg tcacagcaga ctgtgagacg ggcgaggggt
    12781 gggagctggc cgaacccacc caagcgcaaa ggcagccccg gcccctttgc gtcatgtctt
    12841 tttcagcctg aggagagagc aacttgacct aaaaaaattg tatatatgtg ggtgttggat
    12901 cctttgtgtc tctttgtcca gaagctgtgc atgtgatgag agcccaggtc tctgtactgt
    12961 acagagaact gttgtccttc aggtttgttt tcagaaagat gtgatggatg ggccgtcctt
    13021 gatgagaccg cgtgcccgct gggactggcc ttcctccagg atgctgggcc cggcgtggtg
    13081 tttcttctgt cagtggacga gaactcagag gagttcagct ccatgagtag gtgacaaact
    13141 cctggagact cagctgacga tggtgccggt gtgcagaaga cagttgtcat cctgtgggat
    13201 aagcgtgtgc ccgtttgcat ttatttggaa caaaaaaagg agctgcctgg cagcctggct
    13261 ctctgcaagg tgctgttgag cccctggttt gtgtggttct gtgaccacaa gtgctgatgg
    13321 atgtggcgcc atcccagtct tgtcggtgaa ccatcaccag cctgcttatt ggaaaccagg
    13381 cgcagcaagg aagctaggat tcaacgccct ccttccctgc ctcccagccc gcctccaaaa
    13441 gaatttaatc tgctggacaa caaacaatac tgttataaaa ctttgaaaac aagagggcgc
    13501 ggcctccctg acaaggagaa gggcatgccg ggtaatgggc gagggagcct gccaggcccg
    13561 agatggagcc aggcaagagc ccagttggct gggcacctgg gtgcccgccc ctgcccagcc
    13621 caccagccgt gccatcccca gtccagagga gaaggaaccg aaacaaaagt gggggcagcg
    13681 gagctcttga aaaggggaag ttgtcctgag actggcagac agaggtcctg ataacagaat
    13741 gaggctggca tagccgtgaa ggtacagcca ccagcctggc cagctgcagg ggaagcagga
    13801 gagaaaggtg ctccaagctg gctttggact ccagacctac cctctgtctg cccagcctcc
    13861 caccccccac ctagggaagt ggaaccaggt catgggcatg acccggtcca tgtgctctgc
    13921 caggagccct gaaaccagca ttcccagcgg caggaagatg gatgatctgg gctccacttc
    13981 cggcgctcct cccccactct ggctggaact tgcgtcagtc atatcaagga ggccctcggg
    14041 ttgggtgcca gggagagcaa gctgcttcca gccgcatgaa atcacctggc tacttgcaac
    14101 taggggacaa aatcagcatc tggtttcaga gaaccgagag tattttagaa ctcgagagtt
    14161 ggagcccaaa ctcagccgtg cagtggagac cacagaggca ccagggtgct ggagaacaaa
    14221 gcaagtatcg aagcaccggc tccttgcaga accaggcgtg ctctcatctc cacccaagtt
    14281 taatgtgttg tacagtcagt aatacccacc cccatctatg cagaaatatt gcctaggact
    14341 accctcaccc tcaatcttcc tcataattaa gttcaagaac agaatgagac ggtagtccag
    14401 ctacagaaca ggaggcagtg ggcagaagag taggagcaca gactttggag tcagacctgg
    14461 aatcgacacc attcactagt catgggactg tggacaagtt tttgaaccac actgaggatc
    14521 agtttcttct cctgccaaaa agggaatact acctactccg caagactgtt gtgagaattc
    14581 aagagcacag cttggtgttc aaattttatt tccttctctt ccctagagca gcacatgatg
    14641 ttatgtccag gaggcgtaaa aagtagaagg gtttatctag agtcctgaag aattggtagg
    14701 gaaccggaga gatgcagatt cttctttctc ctggttatgg tatcagagga aatacagaca
    14761 tattttctta gcttcaaaca accaaaaaag atggtgcaag taggagatga gaaatctaat
    14821 ttgaacacca tttgcaaacc taattttcag gcagaatttg aaaacaacac aaaacaaaac
    14881 tccattcttt tattagagga ttatctactt agtacaatta taagacacta atctttttgt
    14941 gtcacagtag agaataaata agattggcaa ttaacggggt catatttgaa tgtcctgact
    15001 gctcacgtat ggctgggaag gcggagcccg tgatctacgt gactaggaca catggaagtg
    15061 ttgccctggc tcaggtgaaa cccacctttg tgtagtgtct agagcctcac aggcagaaag
    15121 ggtgcttgtt tcctgatgac gtgagaaaat atgggaaaat gctttgcaca ctgtgaaata
    15181 gtttacaaag cagggcaata ctaatgtaca tattaaccca gtttagtaac agctttggct
    15241 attttatttc gtcatatata taataatctg tagggactgg ttatggaatt aagtaactta
    15301 gaattcatga gttttgtatt gcgattgtct gtgtaaatta ccagctttga ctttcgtgtt
    15361 ctttgagcat cactttgtaa ctcttctctg tgcctttcta atggatccat atatcatgtc
    15421 ccgtcacaag tggaactgca agaagacacc tctgctcggg gcagaggctg ggtcttccga
    15481 tcgcatctcc cttctttctt cagtgagatc ctcttcttct ggaagctggt ttcacatggt
    15541 ggcttagatt tttccatctt tgtatctagc accatttgaa atcagtgttt taggagtaag
    15601 aattgcagca cagcaaaagg ccaaccgcag aggagctgct gctcgtggga tcagcttccc
    15661 tccttctgcc acctgagccg gttcaagaaa aggaagaact tgagaatcaa agtacactct
    15721 tgagtgtgtt gggttgtgga aggggacagt gcagggatgg ggtcgtgttc aatagaaact
    15781 cagaggcttg agcagagcca gaggttgtga ttgtctttct gttgacaggg agcggcaacc
    15841 cctagcagta gcctgttggt aaggcctttg agcacacgct tgggcaatgc cgggttgggt
    15901 acttgattgc aataggcaag gggaggggtg tggaccagaa ggactatctc atcacatcag
    15961 cactgtccac ctgctcctag atgccgtgaa acattcagct gcagttgccg agcagctgaa
    16021 atcagacttg ccacctgcac tgtcaaggtg ccggacccca ccgagcacca ctggacccat
    16081 ctcttacaca ggctgaccga tttctcctgg tgttcagagt ctgtttttgt ctagcaccat
    16141 ttgaaatcgg ttatgatgta gggggaaaag cagcagcctc gaggcctcat gccaagtctg
    16201 gtcagcaaca gcctggggct tcctggaaga tggatgcgca gagagagggg gaggaaggtt
    16261 atgctttttc ctgctagctt ctttaactac atctacaata ctttatgcac gggtaataga
    16321 tcagttaatg gatttttcag aagcaaatca ctaaaattta tctgatgtcc tcggtttgcc
    16381 gaaatgtggt agtgatgtaa actataaatt ggttgctgtt gaattatctt tcagtcatgc
    16441 atcctgacct taataaatgc tttactgtac acaatt
//
LOCUS       XR_004351842           17035 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X32, misc_RNA.
ACCESSION   XR_004351842
VERSION     XR_004351842.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17035
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..17035
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..17035
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X32"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaagtgat actctccacg cctcctctcc
    11761 actgcaccca cctgcggcag tcccaccgtc ttccgtggac ctctcctgat taccttcaca
    11821 agaagcagcc ctcctcccat ccggccagac tcccatacgc ttcatgcctc ttttgtgcta
    11881 ctgtagatgt gctgtggttc ttcgtgtata agtcttatgt cacctattag attgtgagcc
    11941 ccaggaagct aggggaaaga agggaaacat gtacctgcgt ggtgctttct gtttgccagg
    12001 taccacatcc gtctggttca cggcggttat ttcatttatt cctcacctca accctgcgag
    12061 gagagtccca tggccggagg cagaggagct tttgcatcag gaaaacacca tggaaacgcc
    12121 atgagcattg gtggtggcgg agtgagggtt aaacagtgag ccttcctggg atccttttga
    12181 tgccagtgtg tcgggagcct ggagatggag cgctcagccg agtggccagg acgttctgtc
    12241 aacatgaaag cagcaaaaac agtttgtcgg ggctcagcgc tgaccccggg ctggtgtcat
    12301 tttcaggaag ggcttggcac aagaaagacc accgccaggc acgggattgg gggtgacgtc
    12361 ggataactca gtaggcccct atagaccctt gaattttaga atctgaaaag aaaatcagct
    12421 gtttgtcttt tattagatga gcttggcaaa caggatcact tcttgaactc ctctcactgg
    12481 tccccaacaa gagacatctt cccaggttca gaaaaccctt tgggatttct cggttgtggc
    12541 ttattgcctt ggatggaggg caggtccctt ctagggggca ggggtgggcc tggcagtcct
    12601 agtgcccgtt atggggatat ggagtcgtag gtttcctctg ctggcatcac gtgaagacgg
    12661 tggatccaca tcacaggcct tgagctgaag accagctctt gggcagccca cttcagcctc
    12721 tcctttcctt attatctcaa atcaaagtct tatcttctcc ccttcatctt cctcatttct
    12781 ttcttaggcg cagtagtggg cctgaagtcc ttgacctttg cgtctgtgtg tgtgtcatca
    12841 tggcggctca gggttctaga cttttcttga atctgcagca ttgcgctttg tgcgcgtgac
    12901 gccccccccc ccccccgctc cgccccgccc acccggcccc gccccaccag gccttcttcg
    12961 gagcaagaga gaacatgggc ctccatcgcc actgaacctc agccaagccg tcatccccag
    13021 catctggcct cccttctctc ctcccccgct ttcggccagt gtctggggtg gaggagcaaa
    13081 caacttgtgg gaggagatgg agggacagcc tggcctggag ctctctgcct cctttcctcg
    13141 tgtgccattt ttcagcctca cgcttcctgt ggatggatga tgccagcact gacatttgtc
    13201 gccgagcgcc tcctctcccc aaggacttcc ccgcgtgact cttttggggt ctggaaagag
    13261 tggctctggg gccttgggag ccagagggga cagggggacc tggcccaggt cacagcagac
    13321 tgtgagacgg gcgaggggtg ggagctggcc gaacccaccc aagcgcaaag gcagccccgg
    13381 cccctttgcg tcatgtcttt ttcagcctga ggagagagca acttgaccta aaaaaattgt
    13441 atatatgtgg gtgttggatc ctttgtgtct ctttgtccag aagctgtgca tgtgatgaga
    13501 gcccaggtct ctgtactgta cagagaactg ttgtccttca ggtttgtttt cagaaagatg
    13561 tgatggatgg gccgtccttg atgagaccgc gtgcccgctg ggactggcct tcctccagga
    13621 tgctgggccc ggcgtggtgt ttcttctgtc agtggacgag aactcagagg agttcagctc
    13681 catgagtagg tgacaaactc ctggagactc agctgacgat ggtgccggtg tgcagaagac
    13741 agttgtcatc ctgtgggata agcgtgtgcc cgtttgcatt tatttggaac aaaaaaagga
    13801 gctgcctggc agcctggctc tctgcaaggt gctgttgagc ccctggtttg tgtggttctg
    13861 tgaccacaag tgctgatgga tgtggcgcca tcccagtctt gtcggtgaac catcaccagc
    13921 ctgcttattg gaaaccaggc gcagcaagga agctaggatt caacgccctc cttccctgcc
    13981 tcccagcccg cctccaaaag aatttaatct gctggacaac aaacaatact gttataaaac
    14041 tttgaaaaca agagggcgcg gcctccctga caaggagaag ggcatgccgg gtaatgggcg
    14101 agggagcctg ccaggcccga gatggagcca ggcaagagcc cagttggctg ggcacctggg
    14161 tgcccgcccc tgcccagccc accagccgtg ccatccccag tccagaggag aaggaaccga
    14221 aacaaaagtg ggggcagcgg agctcttgaa aaggggaagt tgtcctgaga ctggcagaca
    14281 gaggtcctga taacagaatg aggctggcat agccgtgaag gtacagccac cagcctggcc
    14341 agctgcaggg gaagcaggag agaaaggtgc tccaagctgg ctttggactc cagacctacc
    14401 ctctgtctgc ccagcctccc accccccacc tagggaagtg gaaccaggtc atgggcatga
    14461 cccggtccat gtgctctgcc aggagccctg aaaccagcat tcccagcggc aggaagatgg
    14521 atgatctggg ctccacttcc ggcgctcctc ccccactctg gctggaactt gcgtcagtca
    14581 tatcaaggag gccctcgggt tgggtgccag ggagagcaag ctgcttccag ccgcatgaaa
    14641 tcacctggct acttgcaact aggggacaaa atcagcatct ggtttcagag aaccgagagt
    14701 attttagaac tcgagagttg gagcccaaac tcagccgtgc agtggagacc acagaggcac
    14761 cagggtgctg gagaacaaag caagtatcga agcaccggct ccttgcagaa ccaggcgtgc
    14821 tctcatctcc acccaagttt aatgtgttgt acagtcagta atacccaccc ccatctatgc
    14881 agaaatattg cctaggacta ccctcaccct caatcttcct cataattaag ttcaagaaca
    14941 gaatgagacg gtagtccagc tacagaacag gaggcagtgg gcagaagagt aggagcacag
    15001 actttggagt cagacctgga atcgacacca ttcactagtc atgggactgt ggacaagttt
    15061 ttgaaccaca ctgaggatca gtttcttctc ctgccaaaaa gggaatacta cctactccgc
    15121 aagactgttg tgagaattca agagcacagc ttggtgttca aattttattt ccttctcttc
    15181 cctagagcag cacatgatgt tatgtccagg aggcgtaaaa agtagaaggg tttatctaga
    15241 gtcctgaaga attggtaggg aaccggagag atgcagattc ttctttctcc tggttatggt
    15301 atcagaggaa atacagacat attttcttag cttcaaacaa ccaaaaaaga tggtgcaagt
    15361 aggagatgag aaatctaatt tgaacaccat ttgcaaacct aattttcagg cagaatttga
    15421 aaacaacaca aaacaaaact ccattctttt attagaggat tatctactta gtacaattat
    15481 aagacactaa tctttttgtg tcacagtaga gaataaataa gattggcaat taacggggtc
    15541 atatttgaat gtcctgactg ctcacgtatg gctgggaagg cggagcccgt gatctacgtg
    15601 actaggacac atggaagtgt tgccctggct caggtgaaac ccacctttgt gtagtgtcta
    15661 gagcctcaca ggcagaaagg gtgcttgttt cctgatgacg tgagaaaata tgggaaaatg
    15721 ctttgcacac tgtgaaatag tttacaaagc agggcaatac taatgtacat attaacccag
    15781 tttagtaaca gctttggcta ttttatttcg tcatatatat aataatctgt agggactggt
    15841 tatggaatta agtaacttag aattcatgag ttttgtattg cgattgtctg tgtaaattac
    15901 cagctttgac tttcgtgttc tttgagcatc actttgtaac tcttctctgt gcctttctaa
    15961 tggatccata tatcatgtcc cgtcacaagt ggaactgcaa gaagacacct ctgctcgggg
    16021 cagaggctgg gtcttccgat cgcatctccc ttctttcttc agtgagatcc tcttcttctg
    16081 gaagctggtt tcacatggtg gcttagattt ttccatcttt gtatctagca ccatttgaaa
    16141 tcagtgtttt aggagtaaga attgcagcac agcaaaaggc caaccgcaga ggagctgctg
    16201 ctcgtgggat cagcttccct ccttctgcca cctgagccgg ttcaagaaaa ggaagaactt
    16261 gagaatcaaa gtacactctt gagtgtgttg ggttgtggaa ggggacagtg cagggatggg
    16321 gtcgtgttca atagaaactc agaggcttga gcagagccag aggttgtgat tgtctttctg
    16381 ttgacaggga gcggcaaccc ctagcagtag cctgttggta aggcctttga gcacacgctt
    16441 gggcaatgcc gggttgggta cttgattgca ataggcaagg ggaggggtgt ggaccagaag
    16501 gactatctca tcacatcagc actgtccacc tgctcctaga tgccgtgaaa cattcagctg
    16561 cagttgccga gcagctgaaa tcagacttgc cacctgcact gtcaaggtgc cggaccccac
    16621 cgagcaccac tggacccatc tcttacacag gctgaccgat ttctcctggt gttcagagtc
    16681 tgtttttgtc tagcaccatt tgaaatcggt tatgatgtag ggggaaaagc agcagcctcg
    16741 aggcctcatg ccaagtctgg tcagcaacag cctggggctt cctggaagat ggatgcgcag
    16801 agagaggggg aggaaggtta tgctttttcc tgctagcttc tttaactaca tctacaatac
    16861 tttatgcacg ggtaatagat cagttaatgg atttttcaga agcaaatcac taaaatttat
    16921 ctgatgtcct cggtttgccg aaatgtggta gtgatgtaaa ctataaattg gttgctgttg
    16981 aattatcttt cagtcatgca tcctgacctt aataaatgct ttactgtaca caatt
//
LOCUS       XR_004351846           17026 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X33, misc_RNA.
ACCESSION   XR_004351846
VERSION     XR_004351846.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17026
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..17026
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..17026
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X33"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaagtgat actctccacg cctcctctcc
    11761 actgcaccca cctgcggcag tcccaccgtc ttccgtggac ctctcctgat taccttcaca
    11821 agaagcagcc ctcctcccat ccggccagac tcccatacgc ttcatgcctc ttttgtgcta
    11881 ctgtagatgt gctgtggttc ttcgtgtata agtcttatgt cacctattag attgtgagcc
    11941 ccaggaagct aggggaaaga agggaaacat gtacctgcgt ggtgctttct gtttgccagg
    12001 taccacatcc gtctggttca cggcggttat ttcatttatt cctcacctca accctgcgag
    12061 gagagtccca tggccggagc ttttgcatca ggaaaacacc atggaaacgc catgagcatt
    12121 ggtggtggcg gagtgagggt taaacagtga gccttcctgg gatccttttg atgccagtgt
    12181 gtcgggagcc tggagatgga gcgctcagcc gagtggccag gacgttctgt caacatgaaa
    12241 gcagcaaaaa cagtttgtcg gggctcagcg ctgaccccgg gctggtgtca ttttcaggaa
    12301 gggcttggca caagaaagac caccgccagg cacgggattg ggggtgacgt cggataactc
    12361 agtaggcccc tatagaccct tgaattttag aatctgaaaa gaaaatcagc tgtttgtctt
    12421 ttattagatg agcttggcaa acaggatcac ttcttgaact cctctcactg gtccccaaca
    12481 agagacatct tcccaggttc agaaaaccct ttgggatttc tcggttgtgg cttattgcct
    12541 tggatggagg gcaggtccct tctagggggc aggggtgggc ctggcagtcc tagtgcccgt
    12601 tatggggata tggagtcgta ggtttcctct gctggcatca cgtgaagacg gtggatccac
    12661 atcacaggcc ttgagctgaa gaccagctct tgggcagccc acttcagcct ctcctttcct
    12721 tattatctca aatcaaagtc ttatcttctc cccttcatct tcctcatttc tttcttaggc
    12781 gcagtagtgg gcctgaagtc cttgaccttt gcgtctgtgt gtgtgtcatc atggcggctc
    12841 agggttctag acttttcttg aatctgcagc attgcgcttt gtgcgcgtga cgcccccccc
    12901 cccccccgct ccgccccgcc cacccggccc cgccccacca ggccttcttc ggagcaagag
    12961 agaacatggg cctccatcgc cactgaacct cagccaagcc gtcatcccca gcatctggcc
    13021 tcccttctct cctcccccgc tttcggccag tgtctggggt ggaggagcaa acaacttgtg
    13081 ggaggagatg gagggacagc ctggcctgga gctctctgcc tcctttcctc gtgtgccatt
    13141 tttcagcctc acgcttcctg tggatggatg atgccagcac tgacatttgt cgccgagcgc
    13201 ctcctctccc caaggacttc cccgcgtgac tcttttgggg tctggaaaga gtggctctgg
    13261 ggccttggga gccagagggg acagggggac ctggcccagg tcacagcaga ctgtgagacg
    13321 ggcgaggggt gggagctggc cgaacccacc caagcgcaaa ggcagccccg gcccctttgc
    13381 gtcatgtctt tttcagcctg aggagagagc aacttgacct aaaaaaattg tatatatgtg
    13441 ggtgttggat cctttgtgtc tctttgtcca gaagctgtgc atgtgatgag agcccaggtc
    13501 tctgtactgt acagagaact gttgtccttc aggtttgttt tcagaaagat gtgatggatg
    13561 ggccgtcctt gatgagaccg cgtgcccgct gggactggcc ttcctccagg atgctgggcc
    13621 cggcgtggtg tttcttctgt cagtggacga gaactcagag gagttcagct ccatgagtag
    13681 gtgacaaact cctggagact cagctgacga tggtgccggt gtgcagaaga cagttgtcat
    13741 cctgtgggat aagcgtgtgc ccgtttgcat ttatttggaa caaaaaaagg agctgcctgg
    13801 cagcctggct ctctgcaagg tgctgttgag cccctggttt gtgtggttct gtgaccacaa
    13861 gtgctgatgg atgtggcgcc atcccagtct tgtcggtgaa ccatcaccag cctgcttatt
    13921 ggaaaccagg cgcagcaagg aagctaggat tcaacgccct ccttccctgc ctcccagccc
    13981 gcctccaaaa gaatttaatc tgctggacaa caaacaatac tgttataaaa ctttgaaaac
    14041 aagagggcgc ggcctccctg acaaggagaa gggcatgccg ggtaatgggc gagggagcct
    14101 gccaggcccg agatggagcc aggcaagagc ccagttggct gggcacctgg gtgcccgccc
    14161 ctgcccagcc caccagccgt gccatcccca gtccagagga gaaggaaccg aaacaaaagt
    14221 gggggcagcg gagctcttga aaaggggaag ttgtcctgag actggcagac agaggtcctg
    14281 ataacagaat gaggctggca tagccgtgaa ggtacagcca ccagcctggc cagctgcagg
    14341 ggaagcagga gagaaaggtg ctccaagctg gctttggact ccagacctac cctctgtctg
    14401 cccagcctcc caccccccac ctagggaagt ggaaccaggt catgggcatg acccggtcca
    14461 tgtgctctgc caggagccct gaaaccagca ttcccagcgg caggaagatg gatgatctgg
    14521 gctccacttc cggcgctcct cccccactct ggctggaact tgcgtcagtc atatcaagga
    14581 ggccctcggg ttgggtgcca gggagagcaa gctgcttcca gccgcatgaa atcacctggc
    14641 tacttgcaac taggggacaa aatcagcatc tggtttcaga gaaccgagag tattttagaa
    14701 ctcgagagtt ggagcccaaa ctcagccgtg cagtggagac cacagaggca ccagggtgct
    14761 ggagaacaaa gcaagtatcg aagcaccggc tccttgcaga accaggcgtg ctctcatctc
    14821 cacccaagtt taatgtgttg tacagtcagt aatacccacc cccatctatg cagaaatatt
    14881 gcctaggact accctcaccc tcaatcttcc tcataattaa gttcaagaac agaatgagac
    14941 ggtagtccag ctacagaaca ggaggcagtg ggcagaagag taggagcaca gactttggag
    15001 tcagacctgg aatcgacacc attcactagt catgggactg tggacaagtt tttgaaccac
    15061 actgaggatc agtttcttct cctgccaaaa agggaatact acctactccg caagactgtt
    15121 gtgagaattc aagagcacag cttggtgttc aaattttatt tccttctctt ccctagagca
    15181 gcacatgatg ttatgtccag gaggcgtaaa aagtagaagg gtttatctag agtcctgaag
    15241 aattggtagg gaaccggaga gatgcagatt cttctttctc ctggttatgg tatcagagga
    15301 aatacagaca tattttctta gcttcaaaca accaaaaaag atggtgcaag taggagatga
    15361 gaaatctaat ttgaacacca tttgcaaacc taattttcag gcagaatttg aaaacaacac
    15421 aaaacaaaac tccattcttt tattagagga ttatctactt agtacaatta taagacacta
    15481 atctttttgt gtcacagtag agaataaata agattggcaa ttaacggggt catatttgaa
    15541 tgtcctgact gctcacgtat ggctgggaag gcggagcccg tgatctacgt gactaggaca
    15601 catggaagtg ttgccctggc tcaggtgaaa cccacctttg tgtagtgtct agagcctcac
    15661 aggcagaaag ggtgcttgtt tcctgatgac gtgagaaaat atgggaaaat gctttgcaca
    15721 ctgtgaaata gtttacaaag cagggcaata ctaatgtaca tattaaccca gtttagtaac
    15781 agctttggct attttatttc gtcatatata taataatctg tagggactgg ttatggaatt
    15841 aagtaactta gaattcatga gttttgtatt gcgattgtct gtgtaaatta ccagctttga
    15901 ctttcgtgtt ctttgagcat cactttgtaa ctcttctctg tgcctttcta atggatccat
    15961 atatcatgtc ccgtcacaag tggaactgca agaagacacc tctgctcggg gcagaggctg
    16021 ggtcttccga tcgcatctcc cttctttctt cagtgagatc ctcttcttct ggaagctggt
    16081 ttcacatggt ggcttagatt tttccatctt tgtatctagc accatttgaa atcagtgttt
    16141 taggagtaag aattgcagca cagcaaaagg ccaaccgcag aggagctgct gctcgtggga
    16201 tcagcttccc tccttctgcc acctgagccg gttcaagaaa aggaagaact tgagaatcaa
    16261 agtacactct tgagtgtgtt gggttgtgga aggggacagt gcagggatgg ggtcgtgttc
    16321 aatagaaact cagaggcttg agcagagcca gaggttgtga ttgtctttct gttgacaggg
    16381 agcggcaacc cctagcagta gcctgttggt aaggcctttg agcacacgct tgggcaatgc
    16441 cgggttgggt acttgattgc aataggcaag gggaggggtg tggaccagaa ggactatctc
    16501 atcacatcag cactgtccac ctgctcctag atgccgtgaa acattcagct gcagttgccg
    16561 agcagctgaa atcagacttg ccacctgcac tgtcaaggtg ccggacccca ccgagcacca
    16621 ctggacccat ctcttacaca ggctgaccga tttctcctgg tgttcagagt ctgtttttgt
    16681 ctagcaccat ttgaaatcgg ttatgatgta gggggaaaag cagcagcctc gaggcctcat
    16741 gccaagtctg gtcagcaaca gcctggggct tcctggaaga tggatgcgca gagagagggg
    16801 gaggaaggtt atgctttttc ctgctagctt ctttaactac atctacaata ctttatgcac
    16861 gggtaataga tcagttaatg gatttttcag aagcaaatca ctaaaattta tctgatgtcc
    16921 tcggtttgcc gaaatgtggt agtgatgtaa actataaatt ggttgctgtt gaattatctt
    16981 tcagtcatgc atcctgacct taataaatgc tttactgtac acaatt
//
LOCUS       XR_004351847           15504 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X34, misc_RNA.
ACCESSION   XR_004351847
VERSION     XR_004351847.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15504
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15504
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15504
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X34"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggtgggtg gaccaatggc aggtgaaaac ctttttttga ttggctgagg gaagggtatc
    11221 aaatctgaat ttgcatttca cttgcttaaa ggggaggggg gggaagccca gcagctttct
    11281 aaaatctgtt taggggtgtg cgtatgctcc tgtgtctgtg cctgcttctg actgaccggt
    11341 tgaagcctct tcctgtgcct ttttaacttc atgcactgta agggagagga gctgagggct
    11401 ccccaaactt ttgtttcgga ggggcagggg ttgggaagat gggcacgcag agggttgacc
    11461 aaactggaag aaaatactcg ttctttagtg ggaattttcc gatcagccac acctcagcgt
    11521 tgcggcaaaa taaatcttgg ctcccctgga aacgcatggg caaggtaggg cagagctgct
    11581 actgctgctg ttgccgccac cctgggcttc ctgctgactc cgggctcctc cccggggaca
    11641 ggagatttgc attgacgtcc caggctgtcc agagctgagc ccattatggg aaggacctgc
    11701 cttctggaag ctgctgctcc ccggtgcttg gaaaggtacc acatccgtct ggttcacggc
    11761 ggttatttca tttattcctc acctcaaccc tgcgaggaga gtcccatggc cggttcaccc
    11821 aagacaatgg ggattttttg tagctgaaat tgatggacta acaaacttca gttttcctgg
    11881 tctccttcct ctcgaaacag gaggcagagg agcttttgca tcaggaaaac accatggaaa
    11941 cgccatgagc attggtggtg gcggagtgag ggttaaacag tgagccttcc tgggatcctt
    12001 ttgatgccag gtttgttttc agaaagatgt gatggatggg ccgtccttga tgagaccgcg
    12061 tgcccgctgg gactggcctt cctccaggat gctgggcccg gcgtggtgtt tcttctgtca
    12121 gtggacgaga actcagagga gttcagctcc atgagtaggt gacaaactcc tggagactca
    12181 gctgacgatg gtgccggtgt gcagaagaca gttgtcatcc tgtgggataa gcgtgtgccc
    12241 gtttgcattt atttggaaca aaaaaaggag ctgcctggca gcctggctct ctgcaaggtg
    12301 ctgttgagcc cctggtttgt gtggttctgt gaccacaagt gctgatggat gtggcgccat
    12361 cccagtcttg tcggtgaacc atcaccagcc tgcttattgg aaaccaggcg cagcaaggaa
    12421 gctaggattc aacgccctcc ttccctgcct cccagcccgc ctccaaaaga atttaatctg
    12481 ctggacaaca aacaatactg ttataaaact ttgaaaacaa gagggcgcgg cctccctgac
    12541 aaggagaagg gcatgccggg taatgggcga gggagcctgc caggcccgag atggagccag
    12601 gcaagagccc agttggctgg gcacctgggt gcccgcccct gcccagccca ccagccgtgc
    12661 catccccagt ccagaggaga aggaaccgaa acaaaagtgg gggcagcgga gctcttgaaa
    12721 aggggaagtt gtcctgagac tggcagacag aggtcctgat aacagaatga ggctggcata
    12781 gccgtgaagg tacagccacc agcctggcca gctgcagggg aagcaggaga gaaaggtgct
    12841 ccaagctggc tttggactcc agacctaccc tctgtctgcc cagcctccca ccccccacct
    12901 agggaagtgg aaccaggtca tgggcatgac ccggtccatg tgctctgcca ggagccctga
    12961 aaccagcatt cccagcggca ggaagatgga tgatctgggc tccacttccg gcgctcctcc
    13021 cccactctgg ctggaacttg cgtcagtcat atcaaggagg ccctcgggtt gggtgccagg
    13081 gagagcaagc tgcttccagc cgcatgaaat cacctggcta cttgcaacta ggggacaaaa
    13141 tcagcatctg gtttcagaga accgagagta ttttagaact cgagagttgg agcccaaact
    13201 cagccgtgca gtggagacca cagaggcacc agggtgctgg agaacaaagc aagtatcgaa
    13261 gcaccggctc cttgcagaac caggcgtgct ctcatctcca cccaagttta atgtgttgta
    13321 cagtcagtaa tacccacccc catctatgca gaaatattgc ctaggactac cctcaccctc
    13381 aatcttcctc ataattaagt tcaagaacag aatgagacgg tagtccagct acagaacagg
    13441 aggcagtggg cagaagagta ggagcacaga ctttggagtc agacctggaa tcgacaccat
    13501 tcactagtca tgggactgtg gacaagtttt tgaaccacac tgaggatcag tttcttctcc
    13561 tgccaaaaag ggaatactac ctactccgca agactgttgt gagaattcaa gagcacagct
    13621 tggtgttcaa attttatttc cttctcttcc ctagagcagc acatgatgtt atgtccagga
    13681 ggcgtaaaaa gtagaagggt ttatctagag tcctgaagaa ttggtaggga accggagaga
    13741 tgcagattct tctttctcct ggttatggta tcagaggaaa tacagacata ttttcttagc
    13801 ttcaaacaac caaaaaagat ggtgcaagta ggagatgaga aatctaattt gaacaccatt
    13861 tgcaaaccta attttcaggc agaatttgaa aacaacacaa aacaaaactc cattctttta
    13921 ttagaggatt atctacttag tacaattata agacactaat ctttttgtgt cacagtagag
    13981 aataaataag attggcaatt aacggggtca tatttgaatg tcctgactgc tcacgtatgg
    14041 ctgggaaggc ggagcccgtg atctacgtga ctaggacaca tggaagtgtt gccctggctc
    14101 aggtgaaacc cacctttgtg tagtgtctag agcctcacag gcagaaaggg tgcttgtttc
    14161 ctgatgacgt gagaaaatat gggaaaatgc tttgcacact gtgaaatagt ttacaaagca
    14221 gggcaatact aatgtacata ttaacccagt ttagtaacag ctttggctat tttatttcgt
    14281 catatatata ataatctgta gggactggtt atggaattaa gtaacttaga attcatgagt
    14341 tttgtattgc gattgtctgt gtaaattacc agctttgact ttcgtgttct ttgagcatca
    14401 ctttgtaact cttctctgtg cctttctaat ggatccatat atcatgtccc gtcacaagtg
    14461 gaactgcaag aagacacctc tgctcggggc agaggctggg tcttccgatc gcatctccct
    14521 tctttcttca gtgagatcct cttcttctgg aagctggttt cacatggtgg cttagatttt
    14581 tccatctttg tatctagcac catttgaaat cagtgtttta ggagtaagaa ttgcagcaca
    14641 gcaaaaggcc aaccgcagag gagctgctgc tcgtgggatc agcttccctc cttctgccac
    14701 ctgagccggt tcaagaaaag gaagaacttg agaatcaaag tacactcttg agtgtgttgg
    14761 gttgtggaag gggacagtgc agggatgggg tcgtgttcaa tagaaactca gaggcttgag
    14821 cagagccaga ggttgtgatt gtctttctgt tgacagggag cggcaacccc tagcagtagc
    14881 ctgttggtaa ggcctttgag cacacgcttg ggcaatgccg ggttgggtac ttgattgcaa
    14941 taggcaaggg gaggggtgtg gaccagaagg actatctcat cacatcagca ctgtccacct
    15001 gctcctagat gccgtgaaac attcagctgc agttgccgag cagctgaaat cagacttgcc
    15061 acctgcactg tcaaggtgcc ggaccccacc gagcaccact ggacccatct cttacacagg
    15121 ctgaccgatt tctcctggtg ttcagagtct gtttttgtct agcaccattt gaaatcggtt
    15181 atgatgtagg gggaaaagca gcagcctcga ggcctcatgc caagtctggt cagcaacagc
    15241 ctggggcttc ctggaagatg gatgcgcaga gagaggggga ggaaggttat gctttttcct
    15301 gctagcttct ttaactacat ctacaatact ttatgcacgg gtaatagatc agttaatgga
    15361 tttttcagaa gcaaatcact aaaatttatc tgatgtcctc ggtttgccga aatgtggtag
    15421 tgatgtaaac tataaattgg ttgctgttga attatctttc agtcatgcat cctgacctta
    15481 ataaatgctt tactgtacac aatt
//
LOCUS       XR_004351849           16428 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X35, misc_RNA.
ACCESSION   XR_004351849
VERSION     XR_004351849.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16428
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16428
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16428
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X35"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttggttcac atgtgatggc cttccttgta ctgctgcatc attaactaag tgactgagct
    10681 ggccttccat tggccagggg agggctctca ctccagacac ttcctctgat tggtgggtgg
    10741 accaatggca ggtgaaaacc tttttttgat tggctgaggg aagggtatca aatctgaatt
    10801 tgcatttcac ttgcttaaag gggagggggg ggaagcccag cagctttcta aaatctgttt
    10861 aggggtgtgc gtatgctcct gtgtctgtgc ctgcttctga ctgaccggtt gaagcctctt
    10921 cctgtgcctt tttaacttca tgcactgtaa gggagaggag ctgagggctc cccaaacttt
    10981 tgtttcggag gggcaggggt tgggaagatg ggcacgcaga gggttgacca aactggaaga
    11041 aaatactcgt tctttagtgg gaattttccg atcagccaca cctcagcgtt gcggcaaaat
    11101 aaatcttggc tcccctggaa acgcatgggc aaggtagggc agagctgcta ctgctgctgt
    11161 tgccgccacc ctgggcttcc tgctgactcc gggctcctcc ccggggacag gagatttgca
    11221 ttgacgtccc aggctgtcca gagctgagcc cattatggga aggacctgcc ttctggaagc
    11281 tgctgctccc cggtgcttgg aaaggtacca catccgtctg gttcacggcg gttatttcat
    11341 ttattcctca cctcaaccct gcgaggagag tcccatggcc ggttcaccca agacaatggg
    11401 gattttttgt agctgaaatt gatggactaa caaacttcag ttttcctggt ctccttcctc
    11461 tcgaaacagg aggcagagga gcttttgcat caggaaaaca ccatggaaac gccatgagca
    11521 ttggtggtgg cggagtgagg gttaaacagt gagccttcct gggatccttt tgatgccagt
    11581 gtgtcgggag cctggagatg gagcgctcag ccgagtggcc aggacgttct gtcaacatga
    11641 aagcagcaaa aacagtttgt cggggctcag cgctgacccc gggctggtgt cattttcagg
    11701 aagggcttgg cacaagaaag accaccgcca ggcacgggat tgggggtgac gtcggataac
    11761 tcagtaggcc cctatagacc cttgaatttt agaatctgaa aagaaaatca gctgtttgtc
    11821 ttttattaga tgagcttggc aaacaggatc acttcttgaa ctcctctcac tggtccccaa
    11881 caagagacat cttcccaggt tcagaaaacc ctttgggatt tctcggttgt ggcttattgc
    11941 cttggatgga gggcaggtcc cttctagggg gcaggggtgg gcctggcagt cctagtgccc
    12001 gttatgggga tatggagtcg taggtttcct ctgctggcat cacgtgaaga cggtggatcc
    12061 acatcacagg ccttgagctg aagaccagct cttgggcagc ccacttcagc ctctcctttc
    12121 cttattatct caaatcaaag tcttatcttc tccccttcat cttcctcatt tctttcttag
    12181 gcgcagtagt gggcctgaag tccttgacct ttgcgtctgt gtgtgtgtca tcatggcggc
    12241 tcagggttct agacttttct tgaatctgca gcattgcgct ttgtgcgcgt gacgcccccc
    12301 cccccccccg ctccgccccg cccacccggc cccgccccac caggccttct tcggagcaag
    12361 agagaacatg ggcctccatc gccactgaac ctcagccaag ccgtcatccc cagcatctgg
    12421 cctcccttct ctcctccccc gctttcggcc agtgtctggg gtggaggagc aaacaacttg
    12481 tgggaggaga tggagggaca gcctggcctg gagctctctg cctcctttcc tcgtgtgcca
    12541 tttttcagcc tcacgcttcc tgtggatgga tgatgccagc actgacattt gtcgccgagc
    12601 gcctcctctc cccaaggact tccccgcgtg actcttttgg ggtctggaaa gagtggctct
    12661 ggggccttgg gagccagagg ggacaggggg acctggccca ggtcacagca gactgtgaga
    12721 cgggcgaggg gtgggagctg gccgaaccca cccaagcgca aaggcagccc cggccccttt
    12781 gcgtcatgtc tttttcagcc tgaggagaga gcaacttgac ctaaaaaaat tgtatatatg
    12841 tgggtgttgg atcctttgtg tctctttgtc cagaagctgt gcatgtgatg agagcccagg
    12901 tctctgtact gtacagagaa ctgttgtcct tcaggtttgt tttcagaaag atgtgatgga
    12961 tgggccgtcc ttgatgagac cgcgtgcccg ctgggactgg ccttcctcca ggatgctggg
    13021 cccggcgtgg tgtttcttct gtcagtggac gagaactcag aggagttcag ctccatgagt
    13081 aggtgacaaa ctcctggaga ctcagctgac gatggtgccg gtgtgcagaa gacagttgtc
    13141 atcctgtggg ataagcgtgt gcccgtttgc atttatttgg aacaaaaaaa ggagctgcct
    13201 ggcagcctgg ctctctgcaa ggtgctgttg agcccctggt ttgtgtggtt ctgtgaccac
    13261 aagtgctgat ggatgtggcg ccatcccagt cttgtcggtg aaccatcacc agcctgctta
    13321 ttggaaacca ggcgcagcaa ggaagctagg attcaacgcc ctccttccct gcctcccagc
    13381 ccgcctccaa aagaatttaa tctgctggac aacaaacaat actgttataa aactttgaaa
    13441 acaagagggc gcggcctccc tgacaaggag aagggcatgc cgggtaatgg gcgagggagc
    13501 ctgccaggcc cgagatggag ccaggcaaga gcccagttgg ctgggcacct gggtgcccgc
    13561 ccctgcccag cccaccagcc gtgccatccc cagtccagag gagaaggaac cgaaacaaaa
    13621 gtgggggcag cggagctctt gaaaagggga agttgtcctg agactggcag acagaggtcc
    13681 tgataacaga atgaggctgg catagccgtg aaggtacagc caccagcctg gccagctgca
    13741 ggggaagcag gagagaaagg tgctccaagc tggctttgga ctccagacct accctctgtc
    13801 tgcccagcct cccacccccc acctagggaa gtggaaccag gtcatgggca tgacccggtc
    13861 catgtgctct gccaggagcc ctgaaaccag cattcccagc ggcaggaaga tggatgatct
    13921 gggctccact tccggcgctc ctcccccact ctggctggaa cttgcgtcag tcatatcaag
    13981 gaggccctcg ggttgggtgc cagggagagc aagctgcttc cagccgcatg aaatcacctg
    14041 gctacttgca actaggggac aaaatcagca tctggtttca gagaaccgag agtattttag
    14101 aactcgagag ttggagccca aactcagccg tgcagtggag accacagagg caccagggtg
    14161 ctggagaaca aagcaagtat cgaagcaccg gctccttgca gaaccaggcg tgctctcatc
    14221 tccacccaag tttaatgtgt tgtacagtca gtaataccca cccccatcta tgcagaaata
    14281 ttgcctagga ctaccctcac cctcaatctt cctcataatt aagttcaaga acagaatgag
    14341 acggtagtcc agctacagaa caggaggcag tgggcagaag agtaggagca cagactttgg
    14401 agtcagacct ggaatcgaca ccattcacta gtcatgggac tgtggacaag tttttgaacc
    14461 acactgagga tcagtttctt ctcctgccaa aaagggaata ctacctactc cgcaagactg
    14521 ttgtgagaat tcaagagcac agcttggtgt tcaaatttta tttccttctc ttccctagag
    14581 cagcacatga tgttatgtcc aggaggcgta aaaagtagaa gggtttatct agagtcctga
    14641 agaattggta gggaaccgga gagatgcaga ttcttctttc tcctggttat ggtatcagag
    14701 gaaatacaga catattttct tagcttcaaa caaccaaaaa agatggtgca agtaggagat
    14761 gagaaatcta atttgaacac catttgcaaa cctaattttc aggcagaatt tgaaaacaac
    14821 acaaaacaaa actccattct tttattagag gattatctac ttagtacaat tataagacac
    14881 taatcttttt gtgtcacagt agagaataaa taagattggc aattaacggg gtcatatttg
    14941 aatgtcctga ctgctcacgt atggctggga aggcggagcc cgtgatctac gtgactagga
    15001 cacatggaag tgttgccctg gctcaggtga aacccacctt tgtgtagtgt ctagagcctc
    15061 acaggcagaa agggtgcttg tttcctgatg acgtgagaaa atatgggaaa atgctttgca
    15121 cactgtgaaa tagtttacaa agcagggcaa tactaatgta catattaacc cagtttagta
    15181 acagctttgg ctattttatt tcgtcatata tataataatc tgtagggact ggttatggaa
    15241 ttaagtaact tagaattcat gagttttgta ttgcgattgt ctgtgtaaat taccagcttt
    15301 gactttcgtg ttctttgagc atcactttgt aactcttctc tgtgcctttc taatggatcc
    15361 atatatcatg tcccgtcaca agtggaactg caagaagaca cctctgctcg gggcagaggc
    15421 tgggtcttcc gatcgcatct cccttctttc ttcagtgaga tcctcttctt ctggaagctg
    15481 gtttcacatg gtggcttaga tttttccatc tttgtatcta gcaccatttg aaatcagtgt
    15541 tttaggagta agaattgcag cacagcaaaa ggccaaccgc agaggagctg ctgctcgtgg
    15601 gatcagcttc cctccttctg ccacctgagc cggttcaaga aaaggaagaa cttgagaatc
    15661 aaagtacact cttgagtgtg ttgggttgtg gaaggggaca gtgcagggat ggggtcgtgt
    15721 tcaatagaaa ctcagaggct tgagcagagc cagaggttgt gattgtcttt ctgttgacag
    15781 ggagcggcaa cccctagcag tagcctgttg gtaaggcctt tgagcacacg cttgggcaat
    15841 gccgggttgg gtacttgatt gcaataggca aggggagggg tgtggaccag aaggactatc
    15901 tcatcacatc agcactgtcc acctgctcct agatgccgtg aaacattcag ctgcagttgc
    15961 cgagcagctg aaatcagact tgccacctgc actgtcaagg tgccggaccc caccgagcac
    16021 cactggaccc atctcttaca caggctgacc gatttctcct ggtgttcaga gtctgttttt
    16081 gtctagcacc atttgaaatc ggttatgatg tagggggaaa agcagcagcc tcgaggcctc
    16141 atgccaagtc tggtcagcaa cagcctgggg cttcctggaa gatggatgcg cagagagagg
    16201 gggaggaagg ttatgctttt tcctgctagc ttctttaact acatctacaa tactttatgc
    16261 acgggtaata gatcagttaa tggatttttc agaagcaaat cactaaaatt tatctgatgt
    16321 cctcggtttg ccgaaatgtg gtagtgatgt aaactataaa ttggttgctg ttgaattatc
    16381 tttcagtcat gcatcctgac cttaataaat gctttactgt acacaatt
//
LOCUS       XR_004351851           16763 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X36, misc_RNA.
ACCESSION   XR_004351851
VERSION     XR_004351851.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16763
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16763
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16763
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X36"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaaggtac cacatccgtc tggttcacgg
    11761 cggttatttc atttattcct cacctcaacc ctgcgaggag agtcccatgg ccggagcttt
    11821 tgcatcagga aaacaccatg gaaacgccat gagcattggt ggtggcggag tgagggttaa
    11881 acagtgagcc ttcctgggat ccttttgatg ccagtgtgtc gggagcctgg agatggagcg
    11941 ctcagccgag tggccaggac gttctgtcaa catgaaagca gcaaaaacag tttgtcgggg
    12001 ctcagcgctg accccgggct ggtgtcattt tcaggaaggg cttggcacaa gaaagaccac
    12061 cgccaggcac gggattgggg gtgacgtcgg ataactcagt aggcccctat agacccttga
    12121 attttagaat ctgaaaagaa aatcagctgt ttgtctttta ttagatgagc ttggcaaaca
    12181 ggatcacttc ttgaactcct ctcactggtc cccaacaaga gacatcttcc caggttcaga
    12241 aaaccctttg ggatttctcg gttgtggctt attgccttgg atggagggca ggtcccttct
    12301 agggggcagg ggtgggcctg gcagtcctag tgcccgttat ggggatatgg agtcgtaggt
    12361 ttcctctgct ggcatcacgt gaagacggtg gatccacatc acaggccttg agctgaagac
    12421 cagctcttgg gcagcccact tcagcctctc ctttccttat tatctcaaat caaagtctta
    12481 tcttctcccc ttcatcttcc tcatttcttt cttaggcgca gtagtgggcc tgaagtcctt
    12541 gacctttgcg tctgtgtgtg tgtcatcatg gcggctcagg gttctagact tttcttgaat
    12601 ctgcagcatt gcgctttgtg cgcgtgacgc cccccccccc ccccgctccg ccccgcccac
    12661 ccggccccgc cccaccaggc cttcttcgga gcaagagaga acatgggcct ccatcgccac
    12721 tgaacctcag ccaagccgtc atccccagca tctggcctcc cttctctcct cccccgcttt
    12781 cggccagtgt ctggggtgga ggagcaaaca acttgtggga ggagatggag ggacagcctg
    12841 gcctggagct ctctgcctcc tttcctcgtg tgccattttt cagcctcacg cttcctgtgg
    12901 atggatgatg ccagcactga catttgtcgc cgagcgcctc ctctccccaa ggacttcccc
    12961 gcgtgactct tttggggtct ggaaagagtg gctctggggc cttgggagcc agaggggaca
    13021 gggggacctg gcccaggtca cagcagactg tgagacgggc gaggggtggg agctggccga
    13081 acccacccaa gcgcaaaggc agccccggcc cctttgcgtc atgtcttttt cagcctgagg
    13141 agagagcaac ttgacctaaa aaaattgtat atatgtgggt gttggatcct ttgtgtctct
    13201 ttgtccagaa gctgtgcatg tgatgagagc ccaggtctct gtactgtaca gagaactgtt
    13261 gtccttcagg tttgttttca gaaagatgtg atggatgggc cgtccttgat gagaccgcgt
    13321 gcccgctggg actggccttc ctccaggatg ctgggcccgg cgtggtgttt cttctgtcag
    13381 tggacgagaa ctcagaggag ttcagctcca tgagtaggtg acaaactcct ggagactcag
    13441 ctgacgatgg tgccggtgtg cagaagacag ttgtcatcct gtgggataag cgtgtgcccg
    13501 tttgcattta tttggaacaa aaaaaggagc tgcctggcag cctggctctc tgcaaggtgc
    13561 tgttgagccc ctggtttgtg tggttctgtg accacaagtg ctgatggatg tggcgccatc
    13621 ccagtcttgt cggtgaacca tcaccagcct gcttattgga aaccaggcgc agcaaggaag
    13681 ctaggattca acgccctcct tccctgcctc ccagcccgcc tccaaaagaa tttaatctgc
    13741 tggacaacaa acaatactgt tataaaactt tgaaaacaag agggcgcggc ctccctgaca
    13801 aggagaaggg catgccgggt aatgggcgag ggagcctgcc aggcccgaga tggagccagg
    13861 caagagccca gttggctggg cacctgggtg cccgcccctg cccagcccac cagccgtgcc
    13921 atccccagtc cagaggagaa ggaaccgaaa caaaagtggg ggcagcggag ctcttgaaaa
    13981 ggggaagttg tcctgagact ggcagacaga ggtcctgata acagaatgag gctggcatag
    14041 ccgtgaaggt acagccacca gcctggccag ctgcagggga agcaggagag aaaggtgctc
    14101 caagctggct ttggactcca gacctaccct ctgtctgccc agcctcccac cccccaccta
    14161 gggaagtgga accaggtcat gggcatgacc cggtccatgt gctctgccag gagccctgaa
    14221 accagcattc ccagcggcag gaagatggat gatctgggct ccacttccgg cgctcctccc
    14281 ccactctggc tggaacttgc gtcagtcata tcaaggaggc cctcgggttg ggtgccaggg
    14341 agagcaagct gcttccagcc gcatgaaatc acctggctac ttgcaactag gggacaaaat
    14401 cagcatctgg tttcagagaa ccgagagtat tttagaactc gagagttgga gcccaaactc
    14461 agccgtgcag tggagaccac agaggcacca gggtgctgga gaacaaagca agtatcgaag
    14521 caccggctcc ttgcagaacc aggcgtgctc tcatctccac ccaagtttaa tgtgttgtac
    14581 agtcagtaat acccaccccc atctatgcag aaatattgcc taggactacc ctcaccctca
    14641 atcttcctca taattaagtt caagaacaga atgagacggt agtccagcta cagaacagga
    14701 ggcagtgggc agaagagtag gagcacagac tttggagtca gacctggaat cgacaccatt
    14761 cactagtcat gggactgtgg acaagttttt gaaccacact gaggatcagt ttcttctcct
    14821 gccaaaaagg gaatactacc tactccgcaa gactgttgtg agaattcaag agcacagctt
    14881 ggtgttcaaa ttttatttcc ttctcttccc tagagcagca catgatgtta tgtccaggag
    14941 gcgtaaaaag tagaagggtt tatctagagt cctgaagaat tggtagggaa ccggagagat
    15001 gcagattctt ctttctcctg gttatggtat cagaggaaat acagacatat tttcttagct
    15061 tcaaacaacc aaaaaagatg gtgcaagtag gagatgagaa atctaatttg aacaccattt
    15121 gcaaacctaa ttttcaggca gaatttgaaa acaacacaaa acaaaactcc attcttttat
    15181 tagaggatta tctacttagt acaattataa gacactaatc tttttgtgtc acagtagaga
    15241 ataaataaga ttggcaatta acggggtcat atttgaatgt cctgactgct cacgtatggc
    15301 tgggaaggcg gagcccgtga tctacgtgac taggacacat ggaagtgttg ccctggctca
    15361 ggtgaaaccc acctttgtgt agtgtctaga gcctcacagg cagaaagggt gcttgtttcc
    15421 tgatgacgtg agaaaatatg ggaaaatgct ttgcacactg tgaaatagtt tacaaagcag
    15481 ggcaatacta atgtacatat taacccagtt tagtaacagc tttggctatt ttatttcgtc
    15541 atatatataa taatctgtag ggactggtta tggaattaag taacttagaa ttcatgagtt
    15601 ttgtattgcg attgtctgtg taaattacca gctttgactt tcgtgttctt tgagcatcac
    15661 tttgtaactc ttctctgtgc ctttctaatg gatccatata tcatgtcccg tcacaagtgg
    15721 aactgcaaga agacacctct gctcggggca gaggctgggt cttccgatcg catctccctt
    15781 ctttcttcag tgagatcctc ttcttctgga agctggtttc acatggtggc ttagattttt
    15841 ccatctttgt atctagcacc atttgaaatc agtgttttag gagtaagaat tgcagcacag
    15901 caaaaggcca accgcagagg agctgctgct cgtgggatca gcttccctcc ttctgccacc
    15961 tgagccggtt caagaaaagg aagaacttga gaatcaaagt acactcttga gtgtgttggg
    16021 ttgtggaagg ggacagtgca gggatggggt cgtgttcaat agaaactcag aggcttgagc
    16081 agagccagag gttgtgattg tctttctgtt gacagggagc ggcaacccct agcagtagcc
    16141 tgttggtaag gcctttgagc acacgcttgg gcaatgccgg gttgggtact tgattgcaat
    16201 aggcaagggg aggggtgtgg accagaagga ctatctcatc acatcagcac tgtccacctg
    16261 ctcctagatg ccgtgaaaca ttcagctgca gttgccgagc agctgaaatc agacttgcca
    16321 cctgcactgt caaggtgccg gaccccaccg agcaccactg gacccatctc ttacacaggc
    16381 tgaccgattt ctcctggtgt tcagagtctg tttttgtcta gcaccatttg aaatcggtta
    16441 tgatgtaggg ggaaaagcag cagcctcgag gcctcatgcc aagtctggtc agcaacagcc
    16501 tggggcttcc tggaagatgg atgcgcagag agagggggag gaaggttatg ctttttcctg
    16561 ctagcttctt taactacatc tacaatactt tatgcacggg taatagatca gttaatggat
    16621 ttttcagaag caaatcacta aaatttatct gatgtcctcg gtttgccgaa atgtggtagt
    16681 gatgtaaact ataaattggt tgctgttgaa ttatctttca gtcatgcatc ctgaccttaa
    16741 taaatgcttt actgtacaca att
//
LOCUS       XR_004351852            8195 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X37, misc_RNA.
ACCESSION   XR_004351852
VERSION     XR_004351852.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8195
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8195
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..8195
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X37"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gtggcggagg agatgggaag ggcagaagcc aaggtaaggc caagcaacca gggagatgta
       61 cagatgctct cctgagtgca tttgacattc ttgccccagg tcgcttctca gtgttgttcc
      121 cctgcccctg acacagtccc tcagtttcca tgagttcgag ggagaccagc atatttttgg
      181 atgggctcaa gccaaacggt gaggaaagta atgctactta gtggactaaa taccagtgat
      241 gttggagtta cctgcttttg gttgttgttt ttttgtttgt ttagagtttt ctgtctcctt
      301 ttgttcatag aagtcacttg ggggatggat tatctgataa atcctggtgt tctcggagtt
      361 cacgttcact gcttccctta tcctcatgtg aaggactaag atgatgattg tgggctccgg
      421 aaccatgttt tagattattg ctgtctgatc cagcagccag gacagccgaa accaaaagcc
      481 tctgaagtcc tgttcagcga tggaaatgtg gttggtccca cctttgtccc tggagttgtc
      541 aagcatgaaa atggggagga gttcatcagg gaaggacaga gttcggagga agtctcctaa
      601 gaggaggatg tcactagctt gcctagcaca gtggttggga gtctggtact ggctgcatac
      661 cctgcacagg ctcctcagcc cctaacctgt aaagtggagg tgatggccat cccagcttcc
      721 aagtgccgtg gtgaggaccg actgagctgt gatacacgca tggggccggc accaggcctg
      781 atgcgtggtg agtgattagt ggatattgag gtccacgttc atgaggcgga tgctgtttgg
      841 acagaaaatt ccaggaagaa aaaagatcct ggtctgtggc caaaaaagca gaaaacaacg
      901 aaaatcagcg acggctgtaa ttctggactt gtctgtggca gaaagagtta ataggacggt
      961 ggtctcaggg tgggggccgt tatattctcg ggtccaggag aagctcacgt ggttcaagaa
     1021 aagatgacgc cacatttagt gtgggacagc cctgtctggg ttctgggcgc tgtcactcaa
     1081 agagttaagc tagtcttatg gctggggagc cctcagggaa ggcctgagcc tgcagggacc
     1141 aggccctcta cgccccagag cagtgaggtc tggggtaaaa gaggggctga gaagtgtggc
     1201 caggaaagcc gagtgtaggc ccaacttttt tttttgcctt gtttgaccag ccttggcact
     1261 gccctctggc tctccagggg aaaagctgca gttctgctct tgcaacacaa ggagcagact
     1321 ggagaattta gatctgcgtc acagagctca gagagagaga gaggagagag gggagagaga
     1381 gagggagaga gagagagagc gcgagcgctc cgtcgatagg tctgctagca acagccgtgc
     1441 tgcagcagag agagagagag aaatcaagaa acaagtcata gcaacaccgg gcaccaggtt
     1501 ctgccagctc acttgccaag cgttcagaaa tctgtcaggg gccggaggcc tctgggtagc
     1561 ctaggctaag gagatgacac gcaaggtggc acgggcggtt cccgcgggga ggaggcgacg
     1621 atgggtggtc cgatgggctt caggacttga tggcgtaacc cccgtcttcc cccacgtacg
     1681 tatttgctgg gatcgggggc gatgtctctg cgtatgtggg tgctctgtct ttctcacctt
     1741 ctttcttgct ttttgctatt tttttttttt tttttctgag ggaggggttt tttccacttt
     1801 aatttctttt cccttagtgt cagctgctca agcctgaccg aggtagagga aagaggagca
     1861 agccgtccct ggcgtcccac ctgacctccc agcctctacc cccatttcct tctatcgggc
     1921 agacagacag acacacaggc tggttttcca agttgtttgg gtatcagtgt ctgtccgtcc
     1981 atatggttct caggtagaag gtacggagtg aggaggagaa gtgttgagag gaaggcgaga
     2041 ggggcagctt tctaggggtt gccttgttga aacattcggc cctgggaatc cggggctgtt
     2101 ggggagcagg tgggcaggat ggggtgtggg ctgcgagaag tggggtaaag ctggtaggtt
     2161 tgtcactgcg tagttgggga aagtggggaa tggtgacgca gtcactgttg gatcttgtta
     2221 ggggctctgg ggggacaggt agtgagggtc ccaggatctg tagggccagc tgagaggggt
     2281 tgaggatgag ctgagaaggg aagctagcat ttagagatta aatgtcatcc ttttggcgtt
     2341 ggaaagttgt ttaccttgtg ctctctgtgt ctccatgttg gcacccttcc agttcacatg
     2401 tgatggcctt ccttgtactg ctgcatcatt aactaagtga ctgagctggc cttccattgg
     2461 ccaggggagg gctctcactc cagacacttc ctctgattgg tgggtggacc aatggcaggt
     2521 gaaaaccttt ttttgattgg ctgagggaag ggtatcaaat ctgaatttgc atttcacttg
     2581 cttaaagggg agggggggga agcccagcag ctttctaaaa tctgtttagg ggtgtgcgta
     2641 tgctcctgtg tctgtgcctg cttctgactg accggttgaa gcctcttcct gtgccttttt
     2701 aacttcatgc actgtaaggg agaggagctg agggctcccc aaacttttgt ttcggagggg
     2761 caggggttgg gaagatgggc acgcagaggg ttgaccaaac tggaagaaaa tactcgttct
     2821 ttagtgggaa ttttccgatc agccacacct cagcgttgcg gcaaaataaa tcttggctcc
     2881 cctggaaacg catgggcaag gtagggcaga gctgctactg ctgctgttgc cgccaccctg
     2941 ggcttcctgc tgactccggg ctcctccccg gggacaggag atttgcattg acgtcccagg
     3001 ctgtccagag ctgagcccat tatgggaagg acctgccttc tggaagctgc tgctccccgg
     3061 tgcttggaaa ggtaccacat ccgtctggtt cacggcggtt atttcattta ttcctcacct
     3121 caaccctgcg aggagagtcc catggccggt tcacccaaga caatggggat tttttgtagc
     3181 tgaaattgat ggactaacaa acttcagttt tcctggtctc cttcctctcg aaacaggagg
     3241 cagaggagct tttgcatcag gaaaacacca tggaaacgcc atgagcattg gtggtggcgg
     3301 agtgagggtt aaacagtgag ccttcctggg atccttttga tgccagtgtg tcgggagcct
     3361 ggagatggag cgctcagccg agtggccagg acgttctgtc aacatgaaag cagcaaaaac
     3421 agtttgtcgg ggctcagcgc tgaccccggg ctggtgtcat tttcaggaag ggcttggcac
     3481 aagaaagacc accgccaggc acgggattgg gggtgacgtc ggataactca gtaggcccct
     3541 atagaccctt gaattttaga atctgaaaag aaaatcagct gtttgtcttt tattagatga
     3601 gcttggcaaa caggatcact tcttgaactc ctctcactgg tccccaacaa gagacatctt
     3661 cccaggttca gaaaaccctt tgggatttct cggttgtggc ttattgcctt ggatggaggg
     3721 caggtccctt ctagggggca ggggtgggcc tggcagtcct agtgcccgtt atggggatat
     3781 ggagtcgtag gtttcctctg ctggcatcac gtgaagacgg tggatccaca tcacaggcct
     3841 tgagctgaag accagctctt gggcagccca cttcagcctc tcctttcctt attatctcaa
     3901 atcaaagtct tatcttctcc ccttcatctt cctcatttct ttcttaggcg cagtagtggg
     3961 cctgaagtcc ttgacctttg cgtctgtgtg tgtgtcatca tggcggctca gggttctaga
     4021 cttttcttga atctgcagca ttgcgctttg tgcgcgtgac gccccccccc ccccccgctc
     4081 cgccccgccc acccggcccc gccccaccag gccttcttcg gagcaagaga gaacatgggc
     4141 ctccatcgcc actgaacctc agccaagccg tcatccccag catctggcct cccttctctc
     4201 ctcccccgct ttcggccagt gtctggggtg gaggagcaaa caacttgtgg gaggagatgg
     4261 agggacagcc tggcctggag ctctctgcct cctttcctcg tgtgccattt ttcagcctca
     4321 cgcttcctgt ggatggatga tgccagcact gacatttgtc gccgagcgcc tcctctcccc
     4381 aaggacttcc ccgcgtgact cttttggggt ctggaaagag tggctctggg gccttgggag
     4441 ccagagggga cagggggacc tggcccaggt cacagcagac tgtgagacgg gcgaggggtg
     4501 ggagctggcc gaacccaccc aagcgcaaag gcagccccgg cccctttgcg tcatgtcttt
     4561 ttcagcctga ggagagagca acttgaccta aaaaaattgt atatatgtgg gtgttggatc
     4621 ctttgtgtct ctttgtccag aagctgtgca tgtgatgaga gcccaggtct ctgtactgta
     4681 cagagaactg ttgtccttca ggtttgtttt cagaaagatg tgatggatgg gccgtccttg
     4741 atgagaccgc gtgcccgctg ggactggcct tcctccagga tgctgggccc ggcgtggtgt
     4801 ttcttctgtc agtggacgag aactcagagg agttcagctc catgagtagg tgacaaactc
     4861 ctggagactc agctgacgat ggtgccggtg tgcagaagac agttgtcatc ctgtgggata
     4921 agcgtgtgcc cgtttgcatt tatttggaac aaaaaaagga gctgcctggc agcctggctc
     4981 tctgcaaggt gctgttgagc ccctggtttg tgtggttctg tgaccacaag tgctgatgga
     5041 tgtggcgcca tcccagtctt gtcggtgaac catcaccagc ctgcttattg gaaaccaggc
     5101 gcagcaagga agctaggatt caacgccctc cttccctgcc tcccagcccg cctccaaaag
     5161 aatttaatct gctggacaac aaacaatact gttataaaac tttgaaaaca agagggcgcg
     5221 gcctccctga caaggagaag ggcatgccgg gtaatgggcg agggagcctg ccaggcccga
     5281 gatggagcca ggcaagagcc cagttggctg ggcacctggg tgcccgcccc tgcccagccc
     5341 accagccgtg ccatccccag tccagaggag aaggaaccga aacaaaagtg ggggcagcgg
     5401 agctcttgaa aaggggaagt tgtcctgaga ctggcagaca gaggtcctga taacagaatg
     5461 aggctggcat agccgtgaag gtacagccac cagcctggcc agctgcaggg gaagcaggag
     5521 agaaaggtgc tccaagctgg ctttggactc cagacctacc ctctgtctgc ccagcctccc
     5581 accccccacc tagggaagtg gaaccaggtc atgggcatga cccggtccat gtgctctgcc
     5641 aggagccctg aaaccagcat tcccagcggc aggaagatgg atgatctggg ctccacttcc
     5701 ggcgctcctc ccccactctg gctggaactt gcgtcagtca tatcaaggag gccctcgggt
     5761 tgggtgccag ggagagcaag ctgcttccag ccgcatgaaa tcacctggct acttgcaact
     5821 aggggacaaa atcagcatct ggtttcagag aaccgagagt attttagaac tcgagagttg
     5881 gagcccaaac tcagccgtgc agtggagacc acagaggcac cagggtgctg gagaacaaag
     5941 caagtatcga agcaccggct ccttgcagaa ccaggcgtgc tctcatctcc acccaagttt
     6001 aatgtgttgt acagtcagta atacccaccc ccatctatgc agaaatattg cctaggacta
     6061 ccctcaccct caatcttcct cataattaag ttcaagaaca gaatgagacg gtagtccagc
     6121 tacagaacag gaggcagtgg gcagaagagt aggagcacag actttggagt cagacctgga
     6181 atcgacacca ttcactagtc atgggactgt ggacaagttt ttgaaccaca ctgaggatca
     6241 gtttcttctc ctgccaaaaa gggaatacta cctactccgc aagactgttg tgagaattca
     6301 agagcacagc ttggtgttca aattttattt ccttctcttc cctagagcag cacatgatgt
     6361 tatgtccagg aggcgtaaaa agtagaaggg tttatctaga gtcctgaaga attggtaggg
     6421 aaccggagag atgcagattc ttctttctcc tggttatggt atcagaggaa atacagacat
     6481 attttcttag cttcaaacaa ccaaaaaaga tggtgcaagt aggagatgag aaatctaatt
     6541 tgaacaccat ttgcaaacct aattttcagg cagaatttga aaacaacaca aaacaaaact
     6601 ccattctttt attagaggat tatctactta gtacaattat aagacactaa tctttttgtg
     6661 tcacagtaga gaataaataa gattggcaat taacggggtc atatttgaat gtcctgactg
     6721 ctcacgtatg gctgggaagg cggagcccgt gatctacgtg actaggacac atggaagtgt
     6781 tgccctggct caggtgaaac ccacctttgt gtagtgtcta gagcctcaca ggcagaaagg
     6841 gtgcttgttt cctgatgacg tgagaaaata tgggaaaatg ctttgcacac tgtgaaatag
     6901 tttacaaagc agggcaatac taatgtacat attaacccag tttagtaaca gctttggcta
     6961 ttttatttcg tcatatatat aataatctgt agggactggt tatggaatta agtaacttag
     7021 aattcatgag ttttgtattg cgattgtctg tgtaaattac cagctttgac tttcgtgttc
     7081 tttgagcatc actttgtaac tcttctctgt gcctttctaa tggatccata tatcatgtcc
     7141 cgtcacaagt ggaactgcaa gaagacacct ctgctcgggg cagaggctgg gtcttccgat
     7201 cgcatctccc ttctttcttc agtgagatcc tcttcttctg gaagctggtt tcacatggtg
     7261 gcttagattt ttccatcttt gtatctagca ccatttgaaa tcagtgtttt aggagtaaga
     7321 attgcagcac agcaaaaggc caaccgcaga ggagctgctg ctcgtgggat cagcttccct
     7381 ccttctgcca cctgagccgg ttcaagaaaa ggaagaactt gagaatcaaa gtacactctt
     7441 gagtgtgttg ggttgtggaa ggggacagtg cagggatggg gtcgtgttca atagaaactc
     7501 agaggcttga gcagagccag aggttgtgat tgtctttctg ttgacaggga gcggcaaccc
     7561 ctagcagtag cctgttggta aggcctttga gcacacgctt gggcaatgcc gggttgggta
     7621 cttgattgca ataggcaagg ggaggggtgt ggaccagaag gactatctca tcacatcagc
     7681 actgtccacc tgctcctaga tgccgtgaaa cattcagctg cagttgccga gcagctgaaa
     7741 tcagacttgc cacctgcact gtcaaggtgc cggaccccac cgagcaccac tggacccatc
     7801 tcttacacag gctgaccgat ttctcctggt gttcagagtc tgtttttgtc tagcaccatt
     7861 tgaaatcggt tatgatgtag ggggaaaagc agcagcctcg aggcctcatg ccaagtctgg
     7921 tcagcaacag cctggggctt cctggaagat ggatgcgcag agagaggggg aggaaggtta
     7981 tgctttttcc tgctagcttc tttaactaca tctacaatac tttatgcacg ggtaatagat
     8041 cagttaatgg atttttcaga agcaaatcac taaaatttat ctgatgtcct cggtttgccg
     8101 aaatgtggta gtgatgtaaa ctataaattg gttgctgttg aattatcttt cagtcatgca
     8161 tcctgacctt aataaatgct ttactgtaca caatt
//
LOCUS       XR_004351853           16306 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X38, misc_RNA.
ACCESSION   XR_004351853
VERSION     XR_004351853.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16306
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16306
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..16306
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X38"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggg taagcaggca
     9481 atgttttaat tatgcttttt gtccttagaa aattccagga agaaaaaaga tcctggtctg
     9541 tggccaaaaa agcagaaaac aacgaaaatc agcgacggct gtaattctgg acttgtctgt
     9601 ggcagaaaga gttaatagga cggtggtctc agggtggggg ccgttatatt ctcgggtcca
     9661 ggagaagctc acgtggttca agaaaagatg acgccacatt tagtgtggga cagccctgtc
     9721 tgggttctgg gcgctgtcac tcaaagagtt aagctagtct tatggctggg gagccctcag
     9781 ggaaggcctg agcctgcagg gaccaggccc tctacgcccc agagcagtga ggtctggggt
     9841 aaaagagggg ctgagaagtg tggccaggaa agccgagtgt aggcccaact tttttttttg
     9901 ccttgtttga ccagccttgg cactgccctc tggctctcca ggggaaaagc tgcagttctg
     9961 ctcttgcaac acaaggagca gactggagaa tttagatctg cgtcacagag ctcagagaga
    10021 gagagaggag agaggggaga gagagaggga gagagagaga gagcgcgagc gctccgtcga
    10081 taggtctgct agcaacagcc gtgctgcagc agagagagag agagaaatca agaaacaagt
    10141 catagcaaca ccgggcacca ggttctgcca gctcacttgc caagcgttca gaaatctgtc
    10201 aggggccgga ggcctctggg tagcctaggc taaggagatg acacgcaagg tggcacgggc
    10261 ggttcccgcg gggaggaggc gacgatgggt ggtccgatgg gcttcaggac ttgatggcgt
    10321 aacccccgtc ttcccccacg tacgtatttg ctgggatcgg gggcgatgtc tctgcgtatg
    10381 tgggtgctct gtctttctca ccttctttct tgctttttgc tatttttttt tttttttttc
    10441 tgagggaggg gttttttcca ctttaatttc ttttccctta gtgtcagctg ctcaagcctg
    10501 accgaggtag aggaaagagg agcaagccgt ccctggcgtc ccacctgacc tcccagcctc
    10561 tacccccatt tccttctatc gggcagacag acagacacac aggctggttt tccaagttgt
    10621 ttgggtatca gtgtctgtcc gtccatatgg ttctcaggta gaaggtacgg agtgaggagg
    10681 agaagtgttg agaggaaggc gagaggggca gctttctagg ggttgccttg ttgaaacatt
    10741 cggccctggg aatccggggc tgttggggag caggtgggca ggatggggtg tgggctgcga
    10801 gaagtggggt aaagctggta ggtttgtcac tgcgtagttg gggaaagtgg ggaatggtga
    10861 cgcagtcact gttggatctt gttaggggct ctggggggac aggtagtgag ggtcccagga
    10921 tctgtagggc cagctgagag gggttgagga tgagctgaga agggaagcta gcatttagag
    10981 attaaatgtc atccttttgg cgttggaaag ttgtttacct tgtgctctct gtgtctccat
    11041 gttggcaccc ttccagttca catgtgatgg ccttccttgt actgctgcat cattaactaa
    11101 gtgactgagc tggccttcca ttggccaggg gagggctctc actccagaca cttcctctga
    11161 ttggtgggtg gaccaatggc aggtaccaca tccgtctggt tcacggcggt tatttcattt
    11221 attcctcacc tcaaccctgc gaggagagtc ccatggccgg ttcacccaag acaatgggga
    11281 ttttttgtag ctgaaattga tggactaaca aacttcagtt ttcctggtct ccttcctctc
    11341 gaaacaggag gcagaggagc ttttgcatca ggaaaacacc atggaaacgc catgagcatt
    11401 ggtggtggcg gagtgagggt taaacagtga gccttcctgg gatccttttg atgccagtgt
    11461 gtcgggagcc tggagatgga gcgctcagcc gagtggccag gacgttctgt caacatgaaa
    11521 gcagcaaaaa cagtttgtcg gggctcagcg ctgaccccgg gctggtgtca ttttcaggaa
    11581 gggcttggca caagaaagac caccgccagg cacgggattg ggggtgacgt cggataactc
    11641 agtaggcccc tatagaccct tgaattttag aatctgaaaa gaaaatcagc tgtttgtctt
    11701 ttattagatg agcttggcaa acaggatcac ttcttgaact cctctcactg gtccccaaca
    11761 agagacatct tcccaggttc agaaaaccct ttgggatttc tcggttgtgg cttattgcct
    11821 tggatggagg gcaggtccct tctagggggc aggggtgggc ctggcagtcc tagtgcccgt
    11881 tatggggata tggagtcgta ggtttcctct gctggcatca cgtgaagacg gtggatccac
    11941 atcacaggcc ttgagctgaa gaccagctct tgggcagccc acttcagcct ctcctttcct
    12001 tattatctca aatcaaagtc ttatcttctc cccttcatct tcctcatttc tttcttaggc
    12061 gcagtagtgg gcctgaagtc cttgaccttt gcgtctgtgt gtgtgtcatc atggcggctc
    12121 agggttctag acttttcttg aatctgcagc attgcgcttt gtgcgcgtga cgcccccccc
    12181 cccccccgct ccgccccgcc cacccggccc cgccccacca ggccttcttc ggagcaagag
    12241 agaacatggg cctccatcgc cactgaacct cagccaagcc gtcatcccca gcatctggcc
    12301 tcccttctct cctcccccgc tttcggccag tgtctggggt ggaggagcaa acaacttgtg
    12361 ggaggagatg gagggacagc ctggcctgga gctctctgcc tcctttcctc gtgtgccatt
    12421 tttcagcctc acgcttcctg tggatggatg atgccagcac tgacatttgt cgccgagcgc
    12481 ctcctctccc caaggacttc cccgcgtgac tcttttgggg tctggaaaga gtggctctgg
    12541 ggccttggga gccagagggg acagggggac ctggcccagg tcacagcaga ctgtgagacg
    12601 ggcgaggggt gggagctggc cgaacccacc caagcgcaaa ggcagccccg gcccctttgc
    12661 gtcatgtctt tttcagcctg aggagagagc aacttgacct aaaaaaattg tatatatgtg
    12721 ggtgttggat cctttgtgtc tctttgtcca gaagctgtgc atgtgatgag agcccaggtc
    12781 tctgtactgt acagagaact gttgtccttc aggtttgttt tcagaaagat gtgatggatg
    12841 ggccgtcctt gatgagaccg cgtgcccgct gggactggcc ttcctccagg atgctgggcc
    12901 cggcgtggtg tttcttctgt cagtggacga gaactcagag gagttcagct ccatgagtag
    12961 gtgacaaact cctggagact cagctgacga tggtgccggt gtgcagaaga cagttgtcat
    13021 cctgtgggat aagcgtgtgc ccgtttgcat ttatttggaa caaaaaaagg agctgcctgg
    13081 cagcctggct ctctgcaagg tgctgttgag cccctggttt gtgtggttct gtgaccacaa
    13141 gtgctgatgg atgtggcgcc atcccagtct tgtcggtgaa ccatcaccag cctgcttatt
    13201 ggaaaccagg cgcagcaagg aagctaggat tcaacgccct ccttccctgc ctcccagccc
    13261 gcctccaaaa gaatttaatc tgctggacaa caaacaatac tgttataaaa ctttgaaaac
    13321 aagagggcgc ggcctccctg acaaggagaa gggcatgccg ggtaatgggc gagggagcct
    13381 gccaggcccg agatggagcc aggcaagagc ccagttggct gggcacctgg gtgcccgccc
    13441 ctgcccagcc caccagccgt gccatcccca gtccagagga gaaggaaccg aaacaaaagt
    13501 gggggcagcg gagctcttga aaaggggaag ttgtcctgag actggcagac agaggtcctg
    13561 ataacagaat gaggctggca tagccgtgaa ggtacagcca ccagcctggc cagctgcagg
    13621 ggaagcagga gagaaaggtg ctccaagctg gctttggact ccagacctac cctctgtctg
    13681 cccagcctcc caccccccac ctagggaagt ggaaccaggt catgggcatg acccggtcca
    13741 tgtgctctgc caggagccct gaaaccagca ttcccagcgg caggaagatg gatgatctgg
    13801 gctccacttc cggcgctcct cccccactct ggctggaact tgcgtcagtc atatcaagga
    13861 ggccctcggg ttgggtgcca gggagagcaa gctgcttcca gccgcatgaa atcacctggc
    13921 tacttgcaac taggggacaa aatcagcatc tggtttcaga gaaccgagag tattttagaa
    13981 ctcgagagtt ggagcccaaa ctcagccgtg cagtggagac cacagaggca ccagggtgct
    14041 ggagaacaaa gcaagtatcg aagcaccggc tccttgcaga accaggcgtg ctctcatctc
    14101 cacccaagtt taatgtgttg tacagtcagt aatacccacc cccatctatg cagaaatatt
    14161 gcctaggact accctcaccc tcaatcttcc tcataattaa gttcaagaac agaatgagac
    14221 ggtagtccag ctacagaaca ggaggcagtg ggcagaagag taggagcaca gactttggag
    14281 tcagacctgg aatcgacacc attcactagt catgggactg tggacaagtt tttgaaccac
    14341 actgaggatc agtttcttct cctgccaaaa agggaatact acctactccg caagactgtt
    14401 gtgagaattc aagagcacag cttggtgttc aaattttatt tccttctctt ccctagagca
    14461 gcacatgatg ttatgtccag gaggcgtaaa aagtagaagg gtttatctag agtcctgaag
    14521 aattggtagg gaaccggaga gatgcagatt cttctttctc ctggttatgg tatcagagga
    14581 aatacagaca tattttctta gcttcaaaca accaaaaaag atggtgcaag taggagatga
    14641 gaaatctaat ttgaacacca tttgcaaacc taattttcag gcagaatttg aaaacaacac
    14701 aaaacaaaac tccattcttt tattagagga ttatctactt agtacaatta taagacacta
    14761 atctttttgt gtcacagtag agaataaata agattggcaa ttaacggggt catatttgaa
    14821 tgtcctgact gctcacgtat ggctgggaag gcggagcccg tgatctacgt gactaggaca
    14881 catggaagtg ttgccctggc tcaggtgaaa cccacctttg tgtagtgtct agagcctcac
    14941 aggcagaaag ggtgcttgtt tcctgatgac gtgagaaaat atgggaaaat gctttgcaca
    15001 ctgtgaaata gtttacaaag cagggcaata ctaatgtaca tattaaccca gtttagtaac
    15061 agctttggct attttatttc gtcatatata taataatctg tagggactgg ttatggaatt
    15121 aagtaactta gaattcatga gttttgtatt gcgattgtct gtgtaaatta ccagctttga
    15181 ctttcgtgtt ctttgagcat cactttgtaa ctcttctctg tgcctttcta atggatccat
    15241 atatcatgtc ccgtcacaag tggaactgca agaagacacc tctgctcggg gcagaggctg
    15301 ggtcttccga tcgcatctcc cttctttctt cagtgagatc ctcttcttct ggaagctggt
    15361 ttcacatggt ggcttagatt tttccatctt tgtatctagc accatttgaa atcagtgttt
    15421 taggagtaag aattgcagca cagcaaaagg ccaaccgcag aggagctgct gctcgtggga
    15481 tcagcttccc tccttctgcc acctgagccg gttcaagaaa aggaagaact tgagaatcaa
    15541 agtacactct tgagtgtgtt gggttgtgga aggggacagt gcagggatgg ggtcgtgttc
    15601 aatagaaact cagaggcttg agcagagcca gaggttgtga ttgtctttct gttgacaggg
    15661 agcggcaacc cctagcagta gcctgttggt aaggcctttg agcacacgct tgggcaatgc
    15721 cgggttgggt acttgattgc aataggcaag gggaggggtg tggaccagaa ggactatctc
    15781 atcacatcag cactgtccac ctgctcctag atgccgtgaa acattcagct gcagttgccg
    15841 agcagctgaa atcagacttg ccacctgcac tgtcaaggtg ccggacccca ccgagcacca
    15901 ctggacccat ctcttacaca ggctgaccga tttctcctgg tgttcagagt ctgtttttgt
    15961 ctagcaccat ttgaaatcgg ttatgatgta gggggaaaag cagcagcctc gaggcctcat
    16021 gccaagtctg gtcagcaaca gcctggggct tcctggaaga tggatgcgca gagagagggg
    16081 gaggaaggtt atgctttttc ctgctagctt ctttaactac atctacaata ctttatgcac
    16141 gggtaataga tcagttaatg gatttttcag aagcaaatca ctaaaattta tctgatgtcc
    16201 tcggtttgcc gaaatgtggt agtgatgtaa actataaatt ggttgctgtt gaattatctt
    16261 tcagtcatgc atcctgacct taataaatgc tttactgtac acaatt
//
LOCUS       XR_004351854           15388 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X39, misc_RNA.
ACCESSION   XR_004351854
VERSION     XR_004351854.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15388
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15388
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15388
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X39"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 ggagggaggg agggagagct cctgggggaa gaaggttctg ctggaggtca gtctgctgtc
       61 gcttctcctc aggccacttt tggagggttg ttcagatccc aatgagaagg aaaatgtcaa
      121 agtagaatga gtgcagagga gggctgctgg catatgagga atggttaaag cacgggcaga
      181 tataccccag agaggggaag gtttcagcag aacgagtttg ctgggcagag ttttgtgtat
      241 tgaaaggact gtgatgtgat gtgggtgtcg ggcttattac tctgcggcag tgacagggcg
      301 gccgctgttg gtgcagggag ctgggtcatt gtccctccct ttgagctgcg aaggactcga
      361 gggaggaaag atgggtggcc ctctgagata gtgagcccct tcagcggtgc tcttggtgtt
      421 cacaggtaag ctgaatggcc atgacgcagg gaatgctaat aataaaaagt cataatagtt
      481 gccacttcct gaatgcttgt tgtgtagcag gcagtgtgac ccagggcttt acttgtatgg
      541 actcacttaa tctcctacaa cactgggcag gggtatgagt agctccttag ccctacttta
      601 tagacgagaa aacttagcct gagaaatgaa gtaacccacc caaggttcca tacattggcc
      661 tccagcccaa ggccagtctc cttgtattgg tgaaaggtga ggccggatga cctgtagggt
      721 gtcttacaac accaggtttc taagtctcta tctggtgggt catcccagcc atttgaatgg
      781 ggttgggcag ctctcttggg tccagggcag gagtggcggt tactgctctc ctggtgacct
      841 cactgggact gggaagtcag caggggtatt ccgttggctg ttaggaactg gccttgccgg
      901 ggaagtggct ggggagcccc caggcttatc tgagcatccc agatccttgc atccgatgtc
      961 ctctaaccct ctggtgactc tggggtcttg gaagcaccag tggtcctttt ttgtgtcagc
     1021 ttccgcagaa gcttcttgac tgtgtcgtca gcgcactcag cctgcaggtg tccccccacc
     1081 cccttagctc tgtcactgca gaagggcaca gagtgatgtc caggggccat gacctgcctt
     1141 gttttggggg gccagagtgg gattaaggag ccagctgtcc tcctactgtc ctagttctcc
     1201 aggctctggc aaccgggaaa gtccttgctt ccatgggcag agttccccga agagggccta
     1261 acaccaagcc tgacacatag tcagccccag gcatgttttc ttggaataac aaatgtgtag
     1321 gactcacctg ccttctcagt gctcacccta ggccctgagg actctggaga ttttagaggg
     1381 agggcattgg agggtgggcc gctcctgtca ctccacattc agtggcactg ggagaagctt
     1441 ctcagcatcc tcctttgtgt tttaaggctg ttactgtttc tctgcttcgg gggcaagaac
     1501 actgaccttc caggcctgaa ccagatccta acctgagaat aacggctgcc cgccagtccc
     1561 agaggccttc agagagctga accttcatgt gttgttccaa caccttccct ccgtaaatga
     1621 aacactcaca ggactgccct ttatcccacg gttctggtca tcatcccctc cctactcttg
     1681 agctctctgt gtgcatagga ggtactcaca tcatcaaaca ttttgtggga ccttactttt
     1741 gttaaggctt aatattatga aaataatgta caatgcatcc ccaatatcgc ccccaaatat
     1801 gacattaaat attatgtttt agactgcccc aagccctcgc ccacccaagg ctcgtcagat
     1861 gagagccttg tcccccctcc agctcctgac aaggccggcg ctttgctgaa agtccagacc
     1921 tgtgccctgg tgtgcatgat ggctctgagg tctttcctgt ccctctcagg ctgtgggcaa
     1981 ggtcatgggc gtgggcatgc cccctgtgtg ggggagaagg cagtatggaa gttaaagtgc
     2041 aagtcagagt tgtttgggga acccccatcc tacttgtgtt tgtgacaact gctctctagt
     2101 tctgactcag ctgagtgaag caatagctgg taccggggca ggaaagaaat gccatttttg
     2161 agacacgtgg cactcatgtg gtcatacaga ggttagtaca gccccgtgaa tcatcagttg
     2221 cccaggttct ccatacccta gatatgtctg gtcctgctca gcacttccct ctttgatcaa
     2281 gaaccccagg ggcagcagta acatctaagg gtcctagcct gtgcctggag ggcatctggc
     2341 caagacccct catttcccca gccgaatctg gccggtggca cagatggcag ggtccgccgt
     2401 gtagggatgg ggtagagctc ctttcagtcc gactcatgtg gcccggccac actcccatct
     2461 ctctggaaat tatttccatc cgttgacggc caggatttca agaacagcca gccaagagtt
     2521 gcgttgggtt actccccgag tcccaagaag actttgcctc ctgcatttca ggcaacccta
     2581 gaagcccctc attcaggggc tttggctagt ggaatgacca tgtttactga gccccagccc
     2641 actgtcagaa tagtaggtgc ccgtcccatt gccagcctgg gttttgcctg aggctgagcc
     2701 atgagccctc tggggcagta gcttagactt aacgttcagt ggcctagggt aaggcagacg
     2761 tttcggcctt ttccattttc ccaggaggtg gcgggagcca gcttgggcag gacagtttgg
     2821 agcctggatt tttggcctga gaggcagact gactcagtct gcccagaaga aagcgtcaac
     2881 ttatgaatag agcatactgg ccacgatatc tgccacccta ggcctgacct tccccctaaa
     2941 caaacgtgcc ccgtcactac actgcccttg gcgtattcca cacgggagtc tctgttggtg
     3001 ctggggctca cttctgtttg ttaaggagct gacttggccc tcactcatct tctttcaccc
     3061 tgtagtcagg ggagtcctgt gttctcaggg ccagcgtctg gcaggccact tactgcctgc
     3121 tgcctggttc cagctccccg cccgtggcgg cattccgtgt ctgcatctgc atctcacctc
     3181 tgccaggacc taccctccag cacaggctgt ccctagccct tgtctctcgg attttcactt
     3241 ggcacgtggt gcagcattgt gtccttggag tgtttgtttt cactgctggg gccttgtttc
     3301 acttcagctc agcaacctgg gcagaagtgc catggtcctt tgggttggga atttgatggg
     3361 aaaaactcct cagtggttct ggggtagttg tttctggaga ctgacgagat gcggtcttta
     3421 aggctgttag acggaccaca tcatggtcgt tattgttgat cgaagctatt aacggcacgg
     3481 ttctttcagg aacccttttc cccatggata acatcagacg tctaatctac aagtaccgtt
     3541 tctgacaacc gccccccccc cgactcagca cgttttcaga ctttttctaa ttatatatac
     3601 ttatagattc tgtgttttta tttcttctta gagttccctg agattagaat ttccttacca
     3661 ggtagttaac tgtcccagca atttggcttt tatttggtac tcaagctttt tcctcggcac
     3721 tcaagctttt tcctcgaagg ccctcctctg tcttcagcct atcacctcaa catactccac
     3781 cttgtcgact tggtcttgtc agtacgaagc gaggtgtggt tgtgcctgat tggtacttgg
     3841 ttgaaagact gagattgcca ggtactacag gtctcttgag gtgttactag gccttttctt
     3901 ccagtgcctg gtatggtacc aaccacaaaa gcatcatggt ccatcatcac catcatcatc
     3961 atagtgatac tggtaccagc tgaacattaa ctctgtgttg ggcattgtgc tgaacgctcc
     4021 tgtatctcat accatcctca ccaggaaaac ccctaggaag tatggatgaa gctgaaaata
     4081 ggaacttagg aaggtcaaat aagtcgttca agtctgtata actagtagag gctgtattag
     4141 gatgcacgtt cagacctgtc tcactttaga gtctgagttt ttcaccactg tctgcattat
     4201 ccttgtttag tcgtatgtcc tcacgaagtg tttgttgaat ggcaagattg ttcccacagt
     4261 ctggctggcc tctgaggtat cactaaccat gatgaggata gcacccaata tttttgaata
     4321 ctcagattgc taggctctgt aataatgtga tgtaagtgac atgcgtcagg ttaatctatg
     4381 taatctgcag agctcaatga ggacgatttc ccccgttctg cagattagga aaccgaggct
     4441 cagaaaggct gagttaagtt gctcaagatc acacagctaa agagtgtata agttgggatt
     4501 tagctgccag ttatctcttg aacagtgcga gcctgttctc ttgatcacta tgttattgtc
     4561 tacaaggaaa aaaaagatta atttctacct ctgtcccttt cttctcgctg cccccttcct
     4621 tagcttggga tgctttttct gtgtctgttt cttttcatcc tactctttct gagaggccca
     4681 ggctgcgctc agactatgtc tgtccacatt gaacgttgca aaattagtta ctcgatttat
     4741 attttcttaa actttacttg tagacatatc ctcacgttaa agcatcacct gatttaagat
     4801 tggtgctcca tactgtaaga gtagacctat ttgtctatct tatttctgac caaaggaatg
     4861 gaacagagag cctagttata gacccgtgta tatctggaca cctgatttat gacaaagggg
     4921 gcactgctgg gcagtaggaa atgaacggtc attttaataa taaacagtgc tgggtcagtt
     4981 ggatgtccac aaggaaagaa atgatcttga ccactacctc acgtcatgca caaaaataaa
     5041 ttccggagag atcatccatc tcaatgtgaa agttaagaca aaataaaact tcatttacaa
     5101 ggtcacatag agtatcttca taaccttgag gtagccatac atttttttaa agaagacacc
     5161 aagagcacca aaaataaagg aaaagattga taagttggat gacattaaag tgaggaactt
     5221 ctcatcatca aagacatcaa taaaagagag aaaaggcagg cagagtggaa aggatacaca
     5281 caatacctac aaccggcaag tggattcgta tccagagtac gtaaataatc caacagacac
     5341 gtaagaaaaa gagcccctct cccccccaaa aatgggcaaa agaacattcc atacttataa
     5401 actgagttgt atacagtttt cttctcccaa ttccaggttt taaccaattt gtcctgggtc
     5461 attggcacag cctggtggct ggccttggga actgtctgat cccctggctc atcttgacat
     5521 tttcttttat gtctggactg tggacccttc attttgcatg tcctgtgtca ctcagctgtt
     5581 tttctgccac aagtgcctcc tttctcgtga atacacaata cataggtctc ttcctctttt
     5641 cctttggctt gttaactttt gaccatctat tttaagactc tttctctccg gcttcttctc
     5701 ccttaccatc cctcctgcct ccacccccac ccctttttcg tttccctttt tgtacctcct
     5761 tgtttagcct aaagactttt cgttgcaatg gttatcctaa aatatctgaa agcctttggc
     5821 gggggggtag gctcgtaccg cgggctccag aggcagagcg aagacttaag gcgggtggtt
     5881 agctaccttg agagtgatgt catctcagtt atgttccatt gtctgagacc tccaaaggtg
     5941 ggccggggtg ggggtggggg gtggttactg aacgaagtag aggctgggca gtgccttggt
     6001 cttagtgttg tttacggagg gccctgtgcc ttggatgggc agctggatta tgataatcct
     6061 ttccaatctt atcaacaaag ccccaaatgg agcctttgag gatgcccaga gcagcaactc
     6121 tcatctggga gagagggcct gtgtattgga atgattcttt tgtccttctg gtgggtcagg
     6181 atggggcaca aatactagca ctctaatggt ttcattcata gttaaaaata attccgaggt
     6241 acccctccac ctgcagccct caacatgggg ctggttgaca accactgacc tgaagggcag
     6301 gatttccctt atttccttct gtgccattct tttcctccat tagcagcatc tgtgaggtga
     6361 atcctttcgg ttatcttctt ctttgtttct ttattttatt taaatcccca ctcgggcagt
     6421 gcttgttcct atagcatatt ttggacacat taccacagag aaaacacaat ggaaactctg
     6481 caggtatgtt tggacttcaa aaattggggg acagtgttta aaattcaaga gtttaatgta
     6541 gtaaatgtag atttttgcct tctcctgaaa aattggacga tctgggtctc tactcccaga
     6601 tggccccaag caggcagagc aggggagggg cttgtccctg ctcctgacac actccctccc
     6661 cgtggcttgc atcctttgct acctgccgag tcccccaagg cattggggtt tgtctcttcc
     6721 tgaagtgggt gaaataggct cttgtgggct agcctgggaa cccaaccagt acgtttaata
     6781 tcgtttcagt gagaaaatga gttccggctt ttaaagagca gactttggaa acatcagaga
     6841 tgctaatttg ggaatgcttg tagggtcctc tcacagaacc tgtacgtctt gaggtgatgg
     6901 cctgtgtctt atacttcttc tgcgcggaat gtggccttag catctagtag gtacttaatc
     6961 agtgatttac ctcctggggt taccgagtgc cctttgtctg ctcctccctt ccaggcggta
     7021 aacagaaaca ccttctccct gtggacctga acctgtcagt gctgcccgag accagaccgc
     7081 tgcctgattt atctagaaca cccactcgag cccttgatac tcgtgtggag tttgagatca
     7141 gtcccctgta cagagctccc tgtcttgaga gaaatgactt ctttcctgat gaaagatcca
     7201 gcccgtgttc aggaggccct aatgaggaaa tgggaggaca gagaggctgc actaagcctg
     7261 cgctgttggc tgatgcccgc cgaactggag ttcgtggcaa ttccagagtg cttgcattcc
     7321 aaacccaggg cgagggctgg gtaaaagtcc agctcatccc ctttaaagaa aaaaattctt
     7381 cctctctgac atttcgaggt tttgacccag atcagtcaga ggccacggag agctcgcaat
     7441 gtctggagag tgtgtttagt tcccgaggcc tggagctgca gagaagccgg agcgagccag
     7501 tgacctgctg ggcttgagtt gaagccctgc cttttcaagt gtgccctggc ccagcctccc
     7561 cagacctcac agggtggacg gaaggagcca gcaccttccc ctcactccaa agttatcttt
     7621 accccctgaa atcaaacatc gcatgcagca ccctgtaaaa ctgcttcctt gtaggcttga
     7681 gcgtgcttgc tgagtaaaca tcctcccatg tttttggaac tgaatccatt tctgcttcct
     7741 ggtcatccca tgcgggttct ttctgttctg ggtgccatgc agaatcaggt taatagaagg
     7801 cagacctagc gttgggcagg ggcacctaaa atgacagttt caaccttagt aaattgtaag
     7861 gagagtaaca gcgtcgtggg aagaaagaga aaagacttag acgaaaaatg aaatgaaaca
     7921 gagcctccca aacatagtgc tgccatcatg ctttgcaagt cagagttggt tcctgccgag
     7981 ccctgagacg gggaccttcc tttgcatggg ctcaagctca gttgtgcggt ggctgaacca
     8041 cagtcagcct ccgtctgtag gttgtgtggc tgcgtctggc cctcctgacc ctaacttgct
     8101 cttgccccgt ctctcgtgac ttatttgcct cttctctctc acttccaccc acccgtgaca
     8161 tctccatcgc catggcattg agcagccacg tcatccacca tgttcacggg gtgatgggcc
     8221 aactctgtgc tgagccctac ttccttctcg ttctccctcc tgaagcagga ggctccctgg
     8281 cagagctcaa agccctttgt ttatttgatc ctgggcgtct tggataaatc aggaatgtcc
     8341 tgacatgaac ttaggcatgt ttttcttcca tggaaaagga aactacggca aatggtattt
     8401 aagtaggcag aggaccattc cgggggactt gcgttggtgc catcaaggcc acattccttt
     8461 ggtcatcaga ccagtaggtg acttctttat tggcatgctc taccctggag cccagaaggt
     8521 gtgaatttga agcactttct cccctgctga gagcttggca cagatgctct ggacttcttt
     8581 taaagccatg gagtaccatg gttgtcttcc aggtggtctt ctttctgctg ggtgaaacct
     8641 tggcccagag tagttgcttg aagaaggctg cttgggagtt ggggtacagg ataaggttgc
     8701 tgcctggcct ctcattctcc agccgtcttg aagttgcaat gatctcgatg tgtgatctac
     8761 tttgagtcag ctgccccagg acctgaacac ttccgatcag ggctaggctc ttgtggtaca
     8821 accggtcgcc agaaaccttt gcgggtctgc tttctttgga tgtggcgttg tgggaaccca
     8881 agaattcctg agtctgtcta ggtatatgga gtccagtgag tttagcatct gagttgttct
     8941 ggaactattt ctgggtctgg gggcaggaaa atgttgggag ctatgtgctt tgctgcagtg
     9001 gagacctgtc agtaaccaaa aaacaagccc agtcagtctc cagagcattg gtgggaaccc
     9061 cccccccccc cagctccctg tgagagtttc caggtgtgaa tgcccatgta ttaccatggc
     9121 aggggcagtg cggggtgggc tggcgggtgc tcatctcatt tggccacctg ccctggagag
     9181 aagaagccag tcgttggcca ctgcaggtcc aggcttggct gccgctctgt tttgctgctt
     9241 ttcatgttgt cagaggatct tcttgggaac aaatgactca gcaacctgaa tctctgggac
     9301 tgagtagcct aagtgccttt tgagaagtga ttggacctat ctgcacaggc cctaaaattc
     9361 tgagccccgg aagagtggag atccggactg gttttactat agattcttca ggccgccgct
     9421 caatttggtt tctccaattc ctgccccagt agaaggagct cactcatggg gtaagcaggc
     9481 aatgttttaa ttatgctttt tgtccttaga aaattccagg aagaaaaaag atcctggtct
     9541 gtggccaaaa aagcagaaaa caacgaaaat cagcgacggc tgtaattctg gacttgtctg
     9601 tggcagaaag agttaatagg acggtggtct cagggtgggg gccgttatat tctcgggtcc
     9661 aggagaagct cacgtggttc aagaaaagat gacgccacat ttagtgtggg acagccctgt
     9721 ctgggttctg ggcgctgtca ctcaaagagt taagctagtc ttatggctgg ggagccctca
     9781 gggaaggcct gagcctgcag ggaccaggcc ctctacgccc cagagcagtg aggtctgggg
     9841 taaaagaggg gctgagaagt gtggccagga aagccgagtg taggcccaac tttttttttt
     9901 gccttgtttg accagccttg gcactgccct ctggctctcc aggggaaaag ctgcagttct
     9961 gctcttgcaa cacaaggagc agactggaga atttagatct gcgtcacaga gctcagagag
    10021 agagagagga gagaggggag agagagaggg agagagagag agagcgcgag cgctccgtcg
    10081 ataggtctgc tagcaacagc cgtgctgcag cagagagaga gagagaaatc aagaaacaag
    10141 tcatagcaac accgggcacc aggttctgcc agctcacttg ccaagcgttc agaaatctgt
    10201 caggggccgg aggcctctgg gtagcctagg ctaaggagat gacacgcaag gtggcacggg
    10261 cggttcccgc ggggaggagg cgacgatggg tggtccgatg ggcttcagga cttgatggcg
    10321 taacccccgt cttcccccac gtacgtattt gctgggatcg ggggcgatgt ctctgcgtat
    10381 gtgggtgctc tgtctttctc accttctttc ttgctttttg ctattttttt tttttttttt
    10441 ctgagggagg ggttttttcc actttaattt cttttccctt agtgtcagct gctcaagcct
    10501 gaccgaggta gaggaaagag gagcaagccg tccctggcgt cccacctgac ctcccagcct
    10561 ctacccccat ttccttctat cgggcagaca gacagacaca caggctggtt ttccaagttg
    10621 tttgggtatc agtgtctgtc cgtccatatg gttctcaggt agaaggtacg gagtgaggag
    10681 gagaagtgtt gagaggaagg cgagaggggc agctttctag gggttgcctt gttgaaacat
    10741 tcggccctgg gaatccgggg ctgttgggga gcaggtgggc aggatggggt gtgggctgcg
    10801 agaagtgggg taaagctggt aggtttgtca ctgcgtagtt ggggaaagtg gggaatggtg
    10861 acgcagtcac tgttggatct tgttaggggc tctgggggga caggtagtga gggtcccagg
    10921 atctgtaggg ccagctgaga ggggttgagg atgagctgag aagggaagct agcatttaga
    10981 gattaaatgt catccttttg gcgttggaaa gttgtttacc ttgtgctctc tgtgtctcca
    11041 tgttggcacc cttccagttc acatgtgatg gccttccttg tactgctgca tcattaacta
    11101 agtgactgag ctggccttcc attggccagg ggagggctct cactccagac acttcctctg
    11161 attggtgggt ggaccaatgg caggtgaaaa cctttttttg attggctgag ggaagggtat
    11221 caaatctgaa tttgcatttc acttgcttaa aggggagggg ggggaagccc agcagctttc
    11281 taaaatctgt ttaggggtgt gcgtatgctc ctgtgtctgt gcctgcttct gactgaccgg
    11341 ttgaagcctc ttcctgtgcc tttttaactt catgcactgt aagggagagg agctgagggc
    11401 tccccaaact tttgtttcgg aggggcaggg gttgggaaga tgggcacgca gagggttgac
    11461 caaactggaa gaaaatactc gttctttagt gggaattttc cgatcagcca cacctcagcg
    11521 ttgcggcaaa ataaatcttg gctcccctgg aaacgcatgg gcaaggtagg gcagagctgc
    11581 tactgctgct gttgccgcca ccctgggctt cctgctgact ccgggctcct ccccggggac
    11641 aggagatttg cattgacgtc ccaggctgtc cagagctgag cccattatgg gaaggacctg
    11701 ccttctggaa gctgctgctc cccggtgctt ggaaaggtac cacatccgtc tggttcacgg
    11761 cggttatttc atttattcct cacctcaacc ctgcgaggag agtcccatgg ccggttcacc
    11821 caagacaatg gggatttttt gtagctgaaa ttgatggact aacaaacttc agttttcctg
    11881 gtctccttcc tctcgaaaca ggaggcagag gagcttttgc atcaggaaaa caccatggaa
    11941 acgccatgag cattggtggt ggcggagtga gggttaaaca gtgagccttc ctgggatcct
    12001 tttgatgcca gagaactcag aggagttcag ctccatgagt aggtgacaaa ctcctggaga
    12061 ctcagctgac gatggtgccg gtgtgcagaa gacagttgtc atcctgtggg ataagcgtgt
    12121 gcccgtttgc atttatttgg aacaaaaaaa ggagctgcct ggcagcctgg ctctctgcaa
    12181 ggtgctgttg agcccctggt ttgtgtggtt ctgtgaccac aagtgctgat ggatgtggcg
    12241 ccatcccagt cttgtcggtg aaccatcacc agcctgctta ttggaaacca ggcgcagcaa
    12301 ggaagctagg attcaacgcc ctccttccct gcctcccagc ccgcctccaa aagaatttaa
    12361 tctgctggac aacaaacaat actgttataa aactttgaaa acaagagggc gcggcctccc
    12421 tgacaaggag aagggcatgc cgggtaatgg gcgagggagc ctgccaggcc cgagatggag
    12481 ccaggcaaga gcccagttgg ctgggcacct gggtgcccgc ccctgcccag cccaccagcc
    12541 gtgccatccc cagtccagag gagaaggaac cgaaacaaaa gtgggggcag cggagctctt
    12601 gaaaagggga agttgtcctg agactggcag acagaggtcc tgataacaga atgaggctgg
    12661 catagccgtg aaggtacagc caccagcctg gccagctgca ggggaagcag gagagaaagg
    12721 tgctccaagc tggctttgga ctccagacct accctctgtc tgcccagcct cccacccccc
    12781 acctagggaa gtggaaccag gtcatgggca tgacccggtc catgtgctct gccaggagcc
    12841 ctgaaaccag cattcccagc ggcaggaaga tggatgatct gggctccact tccggcgctc
    12901 ctcccccact ctggctggaa cttgcgtcag tcatatcaag gaggccctcg ggttgggtgc
    12961 cagggagagc aagctgcttc cagccgcatg aaatcacctg gctacttgca actaggggac
    13021 aaaatcagca tctggtttca gagaaccgag agtattttag aactcgagag ttggagccca
    13081 aactcagccg tgcagtggag accacagagg caccagggtg ctggagaaca aagcaagtat
    13141 cgaagcaccg gctccttgca gaaccaggcg tgctctcatc tccacccaag tttaatgtgt
    13201 tgtacagtca gtaataccca cccccatcta tgcagaaata ttgcctagga ctaccctcac
    13261 cctcaatctt cctcataatt aagttcaaga acagaatgag acggtagtcc agctacagaa
    13321 caggaggcag tgggcagaag agtaggagca cagactttgg agtcagacct ggaatcgaca
    13381 ccattcacta gtcatgggac tgtggacaag tttttgaacc acactgagga tcagtttctt
    13441 ctcctgccaa aaagggaata ctacctactc cgcaagactg ttgtgagaat tcaagagcac
    13501 agcttggtgt tcaaatttta tttccttctc ttccctagag cagcacatga tgttatgtcc
    13561 aggaggcgta aaaagtagaa gggtttatct agagtcctga agaattggta gggaaccgga
    13621 gagatgcaga ttcttctttc tcctggttat ggtatcagag gaaatacaga catattttct
    13681 tagcttcaaa caaccaaaaa agatggtgca agtaggagat gagaaatcta atttgaacac
    13741 catttgcaaa cctaattttc aggcagaatt tgaaaacaac acaaaacaaa actccattct
    13801 tttattagag gattatctac ttagtacaat tataagacac taatcttttt gtgtcacagt
    13861 agagaataaa taagattggc aattaacggg gtcatatttg aatgtcctga ctgctcacgt
    13921 atggctggga aggcggagcc cgtgatctac gtgactagga cacatggaag tgttgccctg
    13981 gctcaggtga aacccacctt tgtgtagtgt ctagagcctc acaggcagaa agggtgcttg
    14041 tttcctgatg acgtgagaaa atatgggaaa atgctttgca cactgtgaaa tagtttacaa
    14101 agcagggcaa tactaatgta catattaacc cagtttagta acagctttgg ctattttatt
    14161 tcgtcatata tataataatc tgtagggact ggttatggaa ttaagtaact tagaattcat
    14221 gagttttgta ttgcgattgt ctgtgtaaat taccagcttt gactttcgtg ttctttgagc
    14281 atcactttgt aactcttctc tgtgcctttc taatggatcc atatatcatg tcccgtcaca
    14341 agtggaactg caagaagaca cctctgctcg gggcagaggc tgggtcttcc gatcgcatct
    14401 cccttctttc ttcagtgaga tcctcttctt ctggaagctg gtttcacatg gtggcttaga
    14461 tttttccatc tttgtatcta gcaccatttg aaatcagtgt tttaggagta agaattgcag
    14521 cacagcaaaa ggccaaccgc agaggagctg ctgctcgtgg gatcagcttc cctccttctg
    14581 ccacctgagc cggttcaaga aaaggaagaa cttgagaatc aaagtacact cttgagtgtg
    14641 ttgggttgtg gaaggggaca gtgcagggat ggggtcgtgt tcaatagaaa ctcagaggct
    14701 tgagcagagc cagaggttgt gattgtcttt ctgttgacag ggagcggcaa cccctagcag
    14761 tagcctgttg gtaaggcctt tgagcacacg cttgggcaat gccgggttgg gtacttgatt
    14821 gcaataggca aggggagggg tgtggaccag aaggactatc tcatcacatc agcactgtcc
    14881 acctgctcct agatgccgtg aaacattcag ctgcagttgc cgagcagctg aaatcagact
    14941 tgccacctgc actgtcaagg tgccggaccc caccgagcac cactggaccc atctcttaca
    15001 caggctgacc gatttctcct ggtgttcaga gtctgttttt gtctagcacc atttgaaatc
    15061 ggttatgatg tagggggaaa agcagcagcc tcgaggcctc atgccaagtc tggtcagcaa
    15121 cagcctgggg cttcctggaa gatggatgcg cagagagagg gggaggaagg ttatgctttt
    15181 tcctgctagc ttctttaact acatctacaa tactttatgc acgggtaata gatcagttaa
    15241 tggatttttc agaagcaaat cactaaaatt tatctgatgt cctcggtttg ccgaaatgtg
    15301 gtagtgatgt aaactataaa ttggttgctg ttgaattatc tttcagtcat gcatcctgac
    15361 cttaataaat gctttactgt acacaatt
//
LOCUS       XR_004351855           15948 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X40, misc_RNA.
ACCESSION   XR_004351855
VERSION     XR_004351855.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15948
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15948
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15948
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X40"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 agggagggag ggagagctcc tgggggaaga aggttctgct ggaggtcagt ctgctgtcgc
       61 ttctcctcag gccacttttg gagggttgtt cagatcccaa tgagaaggaa aatgtcaaag
      121 tagaatgagt gcagaggagg gctgctggca tatgaggaat ggttaaagca cgggcagata
      181 taccccagag aggggaaggt ttcagcagaa cgagtttgct gggcagagtt ttgtgtattg
      241 aaaggactgt gatgtgatgt gggtgtcggg cttattactc tgcggcagtg acagggcggc
      301 cgctgttggt gcagggagct gggtcattgt ccctcccttt gagctgcgaa ggactcgagg
      361 gaggaaagat gggtggccct ctgagatagt gagccccttc agcggtgctc ttggtgttca
      421 caggtaagct gaatggccat gacgcaggga atgctaataa taaaaagtca taatagttgc
      481 cacttcctga atgcttgttg tgtagcaggc agtgtgaccc agggctttac ttgtatggac
      541 tcacttaatc tcctacaaca ctgggcaggg gtatgagtag ctccttagcc ctactttata
      601 gacgagaaaa cttagcctga gaaatgaagt aacccaccca aggttccata cattggcctc
      661 cagcccaagg ccagtctcct tgtattggtg aaaggtgagg ccggatgacc tgtagggtgt
      721 cttacaacac caggtttcta agtctctatc tggtgggtca tcccagccat ttgaatgggg
      781 ttgggcagct ctcttgggtc cagggcagga gtggcggtta ctgctctcct ggtgacctca
      841 ctgggactgg gaagtcagca ggggtattcc gttggctgtt aggaactggc cttgccgggg
      901 aagtggctgg ggagccccca ggcttatctg agcatcccag atccttgcat ccgatgtcct
      961 ctaaccctct ggtgactctg gggtcttgga agcaccagtg gtcctttttt gtgtcagctt
     1021 ccgcagaagc ttcttgactg tgtcgtcagc gcactcagcc tgcaggtgtc cccccacccc
     1081 cttagctctg tcactgcaga agggcacaga gtgatgtcca ggggccatga cctgccttgt
     1141 tttggggggc cagagtggga ttaaggagcc agctgtcctc ctactgtcct agttctccag
     1201 gctctggcaa ccgggaaagt ccttgcttcc atgggcagag ttccccgaag agggcctaac
     1261 accaagcctg acacatagtc agccccaggc atgttttctt ggaataacaa atgtgtagga
     1321 ctcacctgcc ttctcagtgc tcaccctagg ccctgaggac tctggagatt ttagagggag
     1381 ggcattggag ggtgggccgc tcctgtcact ccacattcag tggcactggg agaagcttct
     1441 cagcatcctc ctttgtgttt taaggctgtt actgtttctc tgcttcgggg gcaagaacac
     1501 tgaccttcca ggcctgaacc agatcctaac ctgagaataa cggctgcccg ccagtcccag
     1561 aggccttcag agagctgaac cttcatgtgt tgttccaaca ccttccctcc gtaaatgaaa
     1621 cactcacagg actgcccttt atcccacggt tctggtcatc atcccctccc tactcttgag
     1681 ctctctgtgt gcataggagg tactcacatc atcaaacatt ttgtgggacc ttacttttgt
     1741 taaggcttaa tattatgaaa ataatgtaca atgcatcccc aatatcgccc ccaaatatga
     1801 cattaaatat tatgttttag actgccccaa gccctcgccc acccaaggct cgtcagatga
     1861 gagccttgtc ccccctccag ctcctgacaa ggccggcgct ttgctgaaag tccagacctg
     1921 tgccctggtg tgcatgatgg ctctgaggtc tttcctgtcc ctctcaggct gtgggcaagg
     1981 tcatgggcgt gggcatgccc cctgtgtggg ggagaaggca gtatggaagt taaagtgcaa
     2041 gtcagagttg tttggggaac ccccatccta cttgtgtttg tgacaactgc tctctagttc
     2101 tgactcagct gagtgaagca atagctggta ccggggcagg aaagaaatgc catttttgag
     2161 acacgtggca ctcatgtggt catacagagg ttagtacagc cccgtgaatc atcagttgcc
     2221 caggttctcc ataccctaga tatgtctggt cctgctcagc acttccctct ttgatcaaga
     2281 accccagggg cagcagtaac atctaagggt cctagcctgt gcctggaggg catctggcca
     2341 agacccctca tttccccagc cgaatctggc cggtggcaca gatggcaggg tccgccgtgt
     2401 agggatgggg tagagctcct ttcagtccga ctcatgtggc ccggccacac tcccatctct
     2461 ctggaaatta tttccatccg ttgacggcca ggatttcaag aacagccagc caagagttgc
     2521 gttgggttac tccccgagtc ccaagaagac tttgcctcct gcatttcagg caaccctaga
     2581 agcccctcat tcaggggctt tggctagtgg aatgaccatg tttactgagc cccagcccac
     2641 tgtcagaata gtaggtgccc gtcccattgc cagcctgggt tttgcctgag gctgagccat
     2701 gagccctctg gggcagtagc ttagacttaa cgttcagtgg cctagggtaa ggcagacgtt
     2761 tcggcctttt ccattttccc aggaggtggc gggagccagc ttgggcagga cagtttggag
     2821 cctggatttt tggcctgaga ggcagactga ctcagtctgc ccagaagaaa gcgtcaactt
     2881 atgaatagag catactggcc acgatatctg ccaccctagg cctgaccttc cccctaaaca
     2941 aacgtgcccc gtcactacac tgcccttggc gtattccaca cgggagtctc tgttggtgct
     3001 ggggctcact tctgtttgtt aaggagctga cttggccctc actcatcttc tttcaccctg
     3061 tagtcagggg agtcctgtgt tctcagggcc agcgtctggc aggccactta ctgcctgctg
     3121 cctggttcca gctccccgcc cgtggcggca ttccgtgtct gcatctgcat ctcacctctg
     3181 ccaggaccta ccctccagca caggctgtcc ctagcccttg tctctcggat tttcacttgg
     3241 cacgtggtgc agcattgtgt ccttggagtg tttgttttca ctgctggggc cttgtttcac
     3301 ttcagctcag caacctgggc agaagtgcca tggtcctttg ggttgggaat ttgatgggaa
     3361 aaactcctca gtggttctgg ggtagttgtt tctggagact gacgagatgc ggtctttaag
     3421 gctgttagac ggaccacatc atggtcgtta ttgttgatcg aagctattaa cggcacggtt
     3481 ctttcaggaa cccttttccc catggataac atcagacgtc taatctacaa gtaccgtttc
     3541 tgacaaccgc cccccccccg actcagcacg ttttcagact ttttctaatt atatatactt
     3601 atagattctg tgtttttatt tcttcttaga gttccctgag attagaattt ccttaccagg
     3661 tagttaactg tcccagcaat ttggctttta tttggtactc aagctttttc ctcggcactc
     3721 aagctttttc ctcgaaggcc ctcctctgtc ttcagcctat cacctcaaca tactccacct
     3781 tgtcgacttg gtcttgtcag tacgaagcga ggtgtggttg tgcctgattg gtacttggtt
     3841 gaaagactga gattgccagg tactacaggt ctcttgaggt gttactaggc cttttcttcc
     3901 agtgcctggt atggtaccaa ccacaaaagc atcatggtcc atcatcacca tcatcatcat
     3961 agtgatactg gtaccagctg aacattaact ctgtgttggg cattgtgctg aacgctcctg
     4021 tatctcatac catcctcacc aggaaaaccc ctaggaagta tggatgaagc tgaaaatagg
     4081 aacttaggaa ggtcaaataa gtcgttcaag tctgtataac tagtagaggc tgtattagga
     4141 tgcacgttca gacctgtctc actttagagt ctgagttttt caccactgtc tgcattatcc
     4201 ttgtttagtc gtatgtcctc acgaagtgtt tgttgaatgg caagattgtt cccacagtct
     4261 ggctggcctc tgaggtatca ctaaccatga tgaggatagc acccaatatt tttgaatact
     4321 cagattgcta ggctctgtaa taatgtgatg taagtgacat gcgtcaggtt aatctatgta
     4381 atctgcagag ctcaatgagg acgatttccc ccgttctgca gattaggaaa ccgaggctca
     4441 gaaaggctga gttaagttgc tcaagatcac acagctaaag agtgtataag ttgggattta
     4501 gctgccagtt atctcttgaa cagtgcgagc ctgttctctt gatcactatg ttattgtcta
     4561 caaggaaaaa aaagattaat ttctacctct gtccctttct tctcgctgcc cccttcctta
     4621 gcttgggatg ctttttctgt gtctgtttct tttcatccta ctctttctga gaggcccagg
     4681 ctgcgctcag actatgtctg tccacattga acgttgcaaa attagttact cgatttatat
     4741 tttcttaaac tttacttgta gacatatcct cacgttaaag catcacctga tttaagattg
     4801 gtgctccata ctgtaagagt agacctattt gtctatctta tttctgacca aaggaatgga
     4861 acagagagcc tagttataga cccgtgtata tctggacacc tgatttatga caaagggggc
     4921 actgctgggc agtaggaaat gaacggtcat tttaataata aacagtgctg ggtcagttgg
     4981 atgtccacaa ggaaagaaat gatcttgacc actacctcac gtcatgcaca aaaataaatt
     5041 ccggagagat catccatctc aatgtgaaag ttaagacaaa ataaaacttc atttacaagg
     5101 tcacatagag tatcttcata accttgaggt agccatacat ttttttaaag aagacaccaa
     5161 gagcaccaaa aataaaggaa aagattgata agttggatga cattaaagtg aggaacttct
     5221 catcatcaaa gacatcaata aaagagagaa aaggcaggca gagtggaaag gatacacaca
     5281 atacctacaa ccggcaagtg gattcgtatc cagagtacgt aaataatcca acagacacgt
     5341 aagaaaaaga gcccctctcc cccccaaaaa tgggcaaaag aacattccat acttataaac
     5401 tgagttgtat acagttttct tctcccaatt ccaggtttta accaatttgt cctgggtcat
     5461 tggcacagcc tggtggctgg ccttgggaac tgtctgatcc cctggctcat cttgacattt
     5521 tcttttatgt ctggactgtg gacccttcat tttgcatgtc ctgtgtcact cagctgtttt
     5581 tctgccacaa gtgcctcctt tctcgtgaat acacaataca taggtctctt cctcttttcc
     5641 tttggcttgt taacttttga ccatctattt taagactctt tctctccggc ttcttctccc
     5701 ttaccatccc tcctgcctcc acccccaccc ctttttcgtt tccctttttg tacctccttg
     5761 tttagcctaa agacttttcg ttgcaatggt tatcctaaaa tatctgaaag cctttggcgg
     5821 gggggtaggc tcgtaccgcg ggctccagag gcagagcgaa gacttaaggc gggtggttag
     5881 ctaccttgag agtgatgtca tctcagttat gttccattgt ctgagacctc caaaggtggg
     5941 ccggggtggg ggtggggggt ggttactgaa cgaagtagag gctgggcagt gccttggtct
     6001 tagtgttgtt tacggagggc cctgtgcctt ggatgggcag ctggattatg ataatccttt
     6061 ccaatcttat caacaaagcc ccaaatggag cctttgagga tgcccagagc agcaactctc
     6121 atctgggaga gagggcctgt gtattggaat gattcttttg tccttctggt gggtcaggat
     6181 ggggcacaaa tactagcact ctaatggttt cattcatagt taaaaataat tccgaggtac
     6241 ccctccacct gcagccctca acatggggct ggttgacaac cactgacctg aagggcagga
     6301 tttcccttat ttccttctgt gccattcttt tcctccatta gcagcatctg tgaggtgaat
     6361 cctttcggtt atcttcttct ttgtttcttt attttattta aatccccact cgggcagtgc
     6421 ttgttcctat agcatatttt ggacacatta ccacagagaa aacacaatgg aaactctgca
     6481 ggtatgtttg gacttcaaaa attgggggac agtgtttaaa attcaagagt ttaatgtagt
     6541 aaatgtagat ttttgccttc tcctgaaaaa ttggacgatc tgggtctcta ctcccagatg
     6601 gccccaagca ggcagagcag gggaggggct tgtccctgct cctgacacac tccctccccg
     6661 tggcttgcat cctttgctac ctgccgagtc ccccaaggca ttggggtttg tctcttcctg
     6721 aagtgggtga aataggctct tgtgggctag cctgggaacc caaccagtac gtttaatatc
     6781 gtttcagtga gaaaatgagt tccggctttt aaagagcaga ctttggaaac atcagagatg
     6841 ctaatttggg aatgcttgta gggtcctctc acagaacctg tacgtcttga ggtgatggcc
     6901 tgtgtcttat acttcttctg cgcggaatgt ggccttagca tctagtaggt acttaatcag
     6961 tgatttacct cctggggtta ccgagtgccc tttgtctgct cctcccttcc aggcggtaaa
     7021 cagaaacacc ttctccctgt ggacctgaac ctgtcagtgc tgcccgagac cagaccgctg
     7081 cctgatttat ctagaacacc cactcgagcc cttgatactc gtgtggagtt tgagatcagt
     7141 cccctgtaca gagctccctg tcttgagaga aatgacttct ttcctgatga aagatccagc
     7201 ccgtgttcag gaggccctaa tgaggaaatg ggaggacaga gaggctgcac taagcctgcg
     7261 ctgttggctg atgcccgccg aactggagtt cgtggcaatt ccagagtgct tgcattccaa
     7321 acccagggcg agggctgggt aaaagtccag ctcatcccct ttaaagaaaa aaattcttcc
     7381 tctctgacat ttcgaggttt tgacccagat cagtcagagg ccacggagag ctcgcaatgt
     7441 ctggagagtg tgtttagttc ccgaggcctg gagctgcaga gaagccggag cgagccagtg
     7501 acctgctggg cttgagttga agccctgcct tttcaagtgt gccctggccc agcctcccca
     7561 gacctcacag ggtggacgga aggagccagc accttcccct cactccaaag ttatctttac
     7621 cccctgaaat caaacatcgc atgcagcacc ctgtaaaact gcttccttgt aggcttgagc
     7681 gtgcttgctg agtaaacatc ctcccatgtt tttggaactg aatccatttc tgcttcctgg
     7741 tcatcccatg cgggttcttt ctgttctggg tgccatgcag aatcaggtta atagaaggca
     7801 gacctagcgt tgggcagggg cacctaaaat gacagtttca accttagtaa attgtaagga
     7861 gagtaacagc gtcgtgggaa gaaagagaaa agacttagac gaaaaatgaa atgaaacaga
     7921 gcctcccaaa catagtgctg ccatcatgct ttgcaagtca gagttggttc ctgccgagcc
     7981 ctgagacggg gaccttcctt tgcatgggct caagctcagt tgtgcggtgg ctgaaccaca
     8041 gtcagcctcc gtctgtaggt tgtgtggctg cgtctggccc tcctgaccct aacttgctct
     8101 tgccccgtct ctcgtgactt atttgcctct tctctctcac ttccacccac ccgtgacatc
     8161 tccatcgcca tggcattgag cagccacgtc atccaccatg ttcacggggt gatgggccaa
     8221 ctctgtgctg agccctactt ccttctcgtt ctccctcctg aagcaggagg ctccctggca
     8281 gagctcaaag ccctttgttt atttgatcct gggcgtcttg gataaatcag gaatgtcctg
     8341 acatgaactt aggcatgttt ttcttccatg gaaaaggaaa ctacggcaaa tggtatttaa
     8401 gtaggcagag gaccattccg ggggacttgc gttggtgcca tcaaggccac attcctttgg
     8461 tcatcagacc agtaggtgac ttctttattg gcatgctcta ccctggagcc cagaaggtgt
     8521 gaatttgaag cactttctcc cctgctgaga gcttggcaca gatgctctgg acttctttta
     8581 aagccatgga gtaccatggt tgtcttccag gtggtcttct ttctgctggg tgaaaccttg
     8641 gcccagagta gttgcttgaa gaaggctgct tgggagttgg ggtacaggat aaggttgctg
     8701 cctggcctct cattctccag ccgtcttgaa gttgcaatga tctcgatgtg tgatctactt
     8761 tgagtcagct gccccaggac ctgaacactt ccgatcaggg ctaggctctt gtggtacaac
     8821 cggtcgccag aaacctttgc gggtctgctt tctttggatg tggcgttgtg ggaacccaag
     8881 aattcctgag tctgtctagg tatatggagt ccagtgagtt tagcatctga gttgttctgg
     8941 aactatttct gggtctgggg gcaggaaaat gttgggagct atgtgctttg ctgcagtgga
     9001 gacctgtcag taaccaaaaa acaagcccag tcagtctcca gagcattggt gggaaccccc
     9061 ccccccccca gctccctgtg agagtttcca ggtgtgaatg cccatgtatt accatggcag
     9121 gggcagtgcg gggtgggctg gcgggtgctc atctcatttg gccacctgcc ctggagagaa
     9181 gaagccagtc gttggccact gcaggtccag gcttggctgc cgctctgttt tgctgctttt
     9241 catgttgtca gaggatcttc ttgggaacaa atgactcagc aacctgaatc tctgggactg
     9301 agtagcctaa gtgccttttg agaagtgatt ggacctatct gcacaggccc taaaattctg
     9361 agccccggaa gagtggagat ccggactggt tttactatag attcttcagg ccgccgctca
     9421 atttggtttc tccaattcct gccccagtag aaggagctca ctcatggggt aagcaggcaa
     9481 tgttttaatt atgctttttg tccttagaaa attccaggaa gaaaaaagat cctggtctgt
     9541 ggccaaaaaa gcagaaaaca acgaaaatca gcgacggctg taattctgga cttgtctgtg
     9601 gcagaaagag ttaataggac ggtggtctca gggtgggggc cgttatattc tcgggtccag
     9661 gagaagctca cgtggttcaa gaaaagatga cgccacattt agtgtgggac agccctgtct
     9721 gggttctggg cgctgtcact caaagagtta agctagtctt atggctgggg agccctcagg
     9781 gaaggcctga gcctgcaggg accaggccct ctacgcccca gagcagtgag gtctggggta
     9841 aaagaggggc tgagaagtgt ggccaggaaa gccgagtgta ggcccaactt ttttttttgc
     9901 cttgtttgac cagccttggc actgccctct ggctctccag gggaaaagct gcagttctgc
     9961 tcttgcaaca caaggagcag actggagaat ttagatctgc gtcacagagc tcagagagag
    10021 agagaggaga gaggggagag agagagggag agagagagag agcgcgagcg ctccgtcgat
    10081 aggtctgcta gcaacagccg tgctgcagca gagagagaga gagaaatcaa gaaacaagtc
    10141 atagcaacac cgggcaccag gttctgccag ctcacttgcc aagcgttcag aaatctgtca
    10201 ggggccggag gcctctgggt agcctaggct aaggagatga cacgcaaggt ggcacgggcg
    10261 gttcccgcgg ggaggaggcg acgatgggtg gtccgatggg cttcaggact tgatggcgta
    10321 acccccgtct tcccccacgt acgtatttgc tgggatcggg ggcgatgtct ctgcgtatgt
    10381 gggtgctctg tctttctcac cttctttctt gctttttgct attttttttt ttttttttct
    10441 gagggagggg ttttttccac tttaatttct tttcccttag tgtcagctgc tcaagcctga
    10501 ccgaggtaga ggaaagagga gcaagccgtc cctggcgtcc cacctgacct cccagcctct
    10561 acccccattt ccttctatcg ggcagacaga cagacacaca ggctggtttt ccaagttgtt
    10621 tggttcacat gtgatggcct tccttgtact gctgcatcat taactaagtg actgagctgg
    10681 ccttccattg gccaggggag ggctctcact ccagacactt cctctgattg gagatttgca
    10741 ttgacgtccc aggctgtcca gagctgagcc cattatggga aggacctgcc ttctggaagc
    10801 tgctgctccc cggtgcttgg aaaggtacca catccgtctg gttcacggcg gttatttcat
    10861 ttattcctca cctcaaccct gcgaggagag tcccatggcc ggttcaccca agacaatggg
    10921 gattttttgt agctgaaatt gatggactaa caaacttcag ttttcctggt ctccttcctc
    10981 tcgaaacagg aggcagagga gcttttgcat caggaaaaca ccatggaaac gccatgagca
    11041 ttggtggtgg cggagtgagg gttaaacagt gagccttcct gggatccttt tgatgccagt
    11101 gtgtcgggag cctggagatg gagcgctcag ccgagtggcc aggacgttct gtcaacatga
    11161 aagcagcaaa aacagtttgt cggggctcag cgctgacccc gggctggtgt cattttcagg
    11221 aagggcttgg cacaagaaag accaccgcca ggcacgggat tgggggtgac gtcggataac
    11281 tcagtaggcc cctatagacc cttgaatttt agaatctgaa aagaaaatca gctgtttgtc
    11341 ttttattaga tgagcttggc aaacaggatc acttcttgaa ctcctctcac tggtccccaa
    11401 caagagacat cttcccaggt tcagaaaacc ctttgggatt tctcggttgt ggcttattgc
    11461 cttggatgga gggcaggtcc cttctagggg gcaggggtgg gcctggcagt cctagtgccc
    11521 gttatgggga tatggagtcg taggtttcct ctgctggcat cacgtgaaga cggtggatcc
    11581 acatcacagg ccttgagctg aagaccagct cttgggcagc ccacttcagc ctctcctttc
    11641 cttattatct caaatcaaag tcttatcttc tccccttcat cttcctcatt tctttcttag
    11701 gcgcagtagt gggcctgaag tccttgacct ttgcgtctgt gtgtgtgtca tcatggcggc
    11761 tcagggttct agacttttct tgaatctgca gcattgcgct ttgtgcgcgt gacgcccccc
    11821 cccccccccg ctccgccccg cccacccggc cccgccccac caggccttct tcggagcaag
    11881 agagaacatg ggcctccatc gccactgaac ctcagccaag ccgtcatccc cagcatctgg
    11941 cctcccttct ctcctccccc gctttcggcc agtgtctggg gtggaggagc aaacaacttg
    12001 tgggaggaga tggagggaca gcctggcctg gagctctctg cctcctttcc tcgtgtgcca
    12061 tttttcagcc tcacgcttcc tgtggatgga tgatgccagc actgacattt gtcgccgagc
    12121 gcctcctctc cccaaggact tccccgcgtg actcttttgg ggtctggaaa gagtggctct
    12181 ggggccttgg gagccagagg ggacaggggg acctggccca ggtcacagca gactgtgaga
    12241 cgggcgaggg gtgggagctg gccgaaccca cccaagcgca aaggcagccc cggccccttt
    12301 gcgtcatgtc tttttcagcc tgaggagaga gcaacttgac ctaaaaaaat tgtatatatg
    12361 tgggtgttgg atcctttgtg tctctttgtc cagaagctgt gcatgtgatg agagcccagg
    12421 tctctgtact gtacagagaa ctgttgtcct tcaggtttgt tttcagaaag atgtgatgga
    12481 tgggccgtcc ttgatgagac cgcgtgcccg ctgggactgg ccttcctcca ggatgctggg
    12541 cccggcgtgg tgtttcttct gtcagtggac gagaactcag aggagttcag ctccatgagt
    12601 aggtgacaaa ctcctggaga ctcagctgac gatggtgccg gtgtgcagaa gacagttgtc
    12661 atcctgtggg ataagcgtgt gcccgtttgc atttatttgg aacaaaaaaa ggagctgcct
    12721 ggcagcctgg ctctctgcaa ggtgctgttg agcccctggt ttgtgtggtt ctgtgaccac
    12781 aagtgctgat ggatgtggcg ccatcccagt cttgtcggtg aaccatcacc agcctgctta
    12841 ttggaaacca ggcgcagcaa ggaagctagg attcaacgcc ctccttccct gcctcccagc
    12901 ccgcctccaa aagaatttaa tctgctggac aacaaacaat actgttataa aactttgaaa
    12961 acaagagggc gcggcctccc tgacaaggag aagggcatgc cgggtaatgg gcgagggagc
    13021 ctgccaggcc cgagatggag ccaggcaaga gcccagttgg ctgggcacct gggtgcccgc
    13081 ccctgcccag cccaccagcc gtgccatccc cagtccagag gagaaggaac cgaaacaaaa
    13141 gtgggggcag cggagctctt gaaaagggga agttgtcctg agactggcag acagaggtcc
    13201 tgataacaga atgaggctgg catagccgtg aaggtacagc caccagcctg gccagctgca
    13261 ggggaagcag gagagaaagg tgctccaagc tggctttgga ctccagacct accctctgtc
    13321 tgcccagcct cccacccccc acctagggaa gtggaaccag gtcatgggca tgacccggtc
    13381 catgtgctct gccaggagcc ctgaaaccag cattcccagc ggcaggaaga tggatgatct
    13441 gggctccact tccggcgctc ctcccccact ctggctggaa cttgcgtcag tcatatcaag
    13501 gaggccctcg ggttgggtgc cagggagagc aagctgcttc cagccgcatg aaatcacctg
    13561 gctacttgca actaggggac aaaatcagca tctggtttca gagaaccgag agtattttag
    13621 aactcgagag ttggagccca aactcagccg tgcagtggag accacagagg caccagggtg
    13681 ctggagaaca aagcaagtat cgaagcaccg gctccttgca gaaccaggcg tgctctcatc
    13741 tccacccaag tttaatgtgt tgtacagtca gtaataccca cccccatcta tgcagaaata
    13801 ttgcctagga ctaccctcac cctcaatctt cctcataatt aagttcaaga acagaatgag
    13861 acggtagtcc agctacagaa caggaggcag tgggcagaag agtaggagca cagactttgg
    13921 agtcagacct ggaatcgaca ccattcacta gtcatgggac tgtggacaag tttttgaacc
    13981 acactgagga tcagtttctt ctcctgccaa aaagggaata ctacctactc cgcaagactg
    14041 ttgtgagaat tcaagagcac agcttggtgt tcaaatttta tttccttctc ttccctagag
    14101 cagcacatga tgttatgtcc aggaggcgta aaaagtagaa gggtttatct agagtcctga
    14161 agaattggta gggaaccgga gagatgcaga ttcttctttc tcctggttat ggtatcagag
    14221 gaaatacaga catattttct tagcttcaaa caaccaaaaa agatggtgca agtaggagat
    14281 gagaaatcta atttgaacac catttgcaaa cctaattttc aggcagaatt tgaaaacaac
    14341 acaaaacaaa actccattct tttattagag gattatctac ttagtacaat tataagacac
    14401 taatcttttt gtgtcacagt agagaataaa taagattggc aattaacggg gtcatatttg
    14461 aatgtcctga ctgctcacgt atggctggga aggcggagcc cgtgatctac gtgactagga
    14521 cacatggaag tgttgccctg gctcaggtga aacccacctt tgtgtagtgt ctagagcctc
    14581 acaggcagaa agggtgcttg tttcctgatg acgtgagaaa atatgggaaa atgctttgca
    14641 cactgtgaaa tagtttacaa agcagggcaa tactaatgta catattaacc cagtttagta
    14701 acagctttgg ctattttatt tcgtcatata tataataatc tgtagggact ggttatggaa
    14761 ttaagtaact tagaattcat gagttttgta ttgcgattgt ctgtgtaaat taccagcttt
    14821 gactttcgtg ttctttgagc atcactttgt aactcttctc tgtgcctttc taatggatcc
    14881 atatatcatg tcccgtcaca agtggaactg caagaagaca cctctgctcg gggcagaggc
    14941 tgggtcttcc gatcgcatct cccttctttc ttcagtgaga tcctcttctt ctggaagctg
    15001 gtttcacatg gtggcttaga tttttccatc tttgtatcta gcaccatttg aaatcagtgt
    15061 tttaggagta agaattgcag cacagcaaaa ggccaaccgc agaggagctg ctgctcgtgg
    15121 gatcagcttc cctccttctg ccacctgagc cggttcaaga aaaggaagaa cttgagaatc
    15181 aaagtacact cttgagtgtg ttgggttgtg gaaggggaca gtgcagggat ggggtcgtgt
    15241 tcaatagaaa ctcagaggct tgagcagagc cagaggttgt gattgtcttt ctgttgacag
    15301 ggagcggcaa cccctagcag tagcctgttg gtaaggcctt tgagcacacg cttgggcaat
    15361 gccgggttgg gtacttgatt gcaataggca aggggagggg tgtggaccag aaggactatc
    15421 tcatcacatc agcactgtcc acctgctcct agatgccgtg aaacattcag ctgcagttgc
    15481 cgagcagctg aaatcagact tgccacctgc actgtcaagg tgccggaccc caccgagcac
    15541 cactggaccc atctcttaca caggctgacc gatttctcct ggtgttcaga gtctgttttt
    15601 gtctagcacc atttgaaatc ggttatgatg tagggggaaa agcagcagcc tcgaggcctc
    15661 atgccaagtc tggtcagcaa cagcctgggg cttcctggaa gatggatgcg cagagagagg
    15721 gggaggaagg ttatgctttt tcctgctagc ttctttaact acatctacaa tactttatgc
    15781 acgggtaata gatcagttaa tggatttttc agaagcaaat cactaaaatt tatctgatgt
    15841 cctcggtttg ccgaaatgtg gtagtgatgt aaactataaa ttggttgctg ttgaattatc
    15901 tttcagtcat gcatcctgac cttaataaat gctttactgt acacaatt
//
LOCUS       XR_004351857           15272 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X41, misc_RNA.
ACCESSION   XR_004351857
VERSION     XR_004351857.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15272
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15272
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15272
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X41"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gagggaggga gggagagctc ctgggggaag aaggttctgc tggaggtcag tctgctgtcg
       61 cttctcctca ggccactttt ggagggttgt tcagatccca atgagaagga aaatgtcaaa
      121 gtagaatgag tgcagaggag ggctgctggc atatgaggaa tggttaaagc acgggcagat
      181 ataccccaga gaggggaagg tttcagcaga acgagtttgc tgggcagagt tttgtgtatt
      241 gaaaggactg tgatgtgatg tgggtgtcgg gcttattact ctgcggcagt gacagggcgg
      301 ccgctgttgg tgcagggagc tgggtcattg tccctccctt tgagctgcga aggactcgag
      361 ggaggaaaga tgggtggccc tctgagatag tgagcccctt cagcggtgct cttggtgttc
      421 acaggtaagc tgaatggcca tgacgcaggg aatgctaata ataaaaagtc ataatagttg
      481 ccacttcctg aatgcttgtt gtgtagcagg cagtgtgacc cagggcttta cttgtatgga
      541 ctcacttaat ctcctacaac actgggcagg ggtatgagta gctccttagc cctactttat
      601 agacgagaaa acttagcctg agaaatgaag taacccaccc aaggttccat acattggcct
      661 ccagcccaag gccagtctcc ttgtattggt gaaaggtgag gccggatgac ctgtagggtg
      721 tcttacaaca ccaggtttct aagtctctat ctggtgggtc atcccagcca tttgaatggg
      781 gttgggcagc tctcttgggt ccagggcagg agtggcggtt actgctctcc tggtgacctc
      841 actgggactg ggaagtcagc aggggtattc cgttggctgt taggaactgg ccttgccggg
      901 gaagtggctg gggagccccc aggcttatct gagcatccca gatccttgca tccgatgtcc
      961 tctaaccctc tggtgactct ggggtcttgg aagcaccagt ggtccttttt tgtgtcagct
     1021 tccgcagaag cttcttgact gtgtcgtcag cgcactcagc ctgcaggtgt ccccccaccc
     1081 ccttagctct gtcactgcag aagggcacag agtgatgtcc aggggccatg acctgccttg
     1141 ttttgggggg ccagagtggg attaaggagc cagctgtcct cctactgtcc tagttctcca
     1201 ggctctggca accgggaaag tccttgcttc catgggcaga gttccccgaa gagggcctaa
     1261 caccaagcct gacacatagt cagccccagg catgttttct tggaataaca aatgtgtagg
     1321 actcacctgc cttctcagtg ctcaccctag gccctgagga ctctggagat tttagaggga
     1381 gggcattgga gggtgggccg ctcctgtcac tccacattca gtggcactgg gagaagcttc
     1441 tcagcatcct cctttgtgtt ttaaggctgt tactgtttct ctgcttcggg ggcaagaaca
     1501 ctgaccttcc aggcctgaac cagatcctaa cctgagaata acggctgccc gccagtccca
     1561 gaggccttca gagagctgaa ccttcatgtg ttgttccaac accttccctc cgtaaatgaa
     1621 acactcacag gactgccctt tatcccacgg ttctggtcat catcccctcc ctactcttga
     1681 gctctctgtg tgcataggag gtactcacat catcaaacat tttgtgggac cttacttttg
     1741 ttaaggctta atattatgaa aataatgtac aatgcatccc caatatcgcc cccaaatatg
     1801 acattaaata ttatgtttta gactgcccca agccctcgcc cacccaaggc tcgtcagatg
     1861 agagccttgt cccccctcca gctcctgaca aggccggcgc tttgctgaaa gtccagacct
     1921 gtgccctggt gtgcatgatg gctctgaggt ctttcctgtc cctctcaggc tgtgggcaag
     1981 gtcatgggcg tgggcatgcc ccctgtgtgg gggagaaggc agtatggaag ttaaagtgca
     2041 agtcagagtt gtttggggaa cccccatcct acttgtgttt gtgacaactg ctctctagtt
     2101 ctgactcagc tgagtgaagc aatagctggt accggggcag gaaagaaatg ccatttttga
     2161 gacacgtggc actcatgtgg tcatacagag gttagtacag ccccgtgaat catcagttgc
     2221 ccaggttctc cataccctag atatgtctgg tcctgctcag cacttccctc tttgatcaag
     2281 aaccccaggg gcagcagtaa catctaaggg tcctagcctg tgcctggagg gcatctggcc
     2341 aagacccctc atttccccag ccgaatctgg ccggtggcac agatggcagg gtccgccgtg
     2401 tagggatggg gtagagctcc tttcagtccg actcatgtgg cccggccaca ctcccatctc
     2461 tctggaaatt atttccatcc gttgacggcc aggatttcaa gaacagccag ccaagagttg
     2521 cgttgggtta ctccccgagt cccaagaaga ctttgcctcc tgcatttcag gcaaccctag
     2581 aagcccctca ttcaggggct ttggctagtg gaatgaccat gtttactgag ccccagccca
     2641 ctgtcagaat agtaggtgcc cgtcccattg ccagcctggg ttttgcctga ggctgagcca
     2701 tgagccctct ggggcagtag cttagactta acgttcagtg gcctagggta aggcagacgt
     2761 ttcggccttt tccattttcc caggaggtgg cgggagccag cttgggcagg acagtttgga
     2821 gcctggattt ttggcctgag aggcagactg actcagtctg cccagaagaa agcgtcaact
     2881 tatgaataga gcatactggc cacgatatct gccaccctag gcctgacctt ccccctaaac
     2941 aaacgtgccc cgtcactaca ctgcccttgg cgtattccac acgggagtct ctgttggtgc
     3001 tggggctcac ttctgtttgt taaggagctg acttggccct cactcatctt ctttcaccct
     3061 gtagtcaggg gagtcctgtg ttctcagggc cagcgtctgg caggccactt actgcctgct
     3121 gcctggttcc agctccccgc ccgtggcggc attccgtgtc tgcatctgca tctcacctct
     3181 gccaggacct accctccagc acaggctgtc cctagccctt gtctctcgga ttttcacttg
     3241 gcacgtggtg cagcattgtg tccttggagt gtttgttttc actgctgggg ccttgtttca
     3301 cttcagctca gcaacctggg cagaagtgcc atggtccttt gggttgggaa tttgatggga
     3361 aaaactcctc agtggttctg gggtagttgt ttctggagac tgacgagatg cggtctttaa
     3421 ggctgttaga cggaccacat catggtcgtt attgttgatc gaagctatta acggcacggt
     3481 tctttcagga acccttttcc ccatggataa catcagacgt ctaatctaca agtaccgttt
     3541 ctgacaaccg cccccccccc gactcagcac gttttcagac tttttctaat tatatatact
     3601 tatagattct gtgtttttat ttcttcttag agttccctga gattagaatt tccttaccag
     3661 gtagttaact gtcccagcaa tttggctttt atttggtact caagcttttt cctcggcact
     3721 caagcttttt cctcgaaggc cctcctctgt cttcagccta tcacctcaac atactccacc
     3781 ttgtcgactt ggtcttgtca gtacgaagcg aggtgtggtt gtgcctgatt ggtacttggt
     3841 tgaaagactg agattgccag gtactacagg tctcttgagg tgttactagg ccttttcttc
     3901 cagtgcctgg tatggtacca accacaaaag catcatggtc catcatcacc atcatcatca
     3961 tagtgatact ggtaccagct gaacattaac tctgtgttgg gcattgtgct gaacgctcct
     4021 gtatctcata ccatcctcac caggaaaacc cctaggaagt atggatgaag ctgaaaatag
     4081 gaacttagga aggtcaaata agtcgttcaa gtctgtataa ctagtagagg ctgtattagg
     4141 atgcacgttc agacctgtct cactttagag tctgagtttt tcaccactgt ctgcattatc
     4201 cttgtttagt cgtatgtcct cacgaagtgt ttgttgaatg gcaagattgt tcccacagtc
     4261 tggctggcct ctgaggtatc actaaccatg atgaggatag cacccaatat ttttgaatac
     4321 tcagattgct aggctctgta ataatgtgat gtaagtgaca tgcgtcaggt taatctatgt
     4381 aatctgcaga gctcaatgag gacgatttcc cccgttctgc agattaggaa accgaggctc
     4441 agaaaggctg agttaagttg ctcaagatca cacagctaaa gagtgtataa gttgggattt
     4501 agctgccagt tatctcttga acagtgcgag cctgttctct tgatcactat gttattgtct
     4561 acaaggaaaa aaaagattaa tttctacctc tgtccctttc ttctcgctgc ccccttcctt
     4621 agcttgggat gctttttctg tgtctgtttc ttttcatcct actctttctg agaggcccag
     4681 gctgcgctca gactatgtct gtccacattg aacgttgcaa aattagttac tcgatttata
     4741 ttttcttaaa ctttacttgt agacatatcc tcacgttaaa gcatcacctg atttaagatt
     4801 ggtgctccat actgtaagag tagacctatt tgtctatctt atttctgacc aaaggaatgg
     4861 aacagagagc ctagttatag acccgtgtat atctggacac ctgatttatg acaaaggggg
     4921 cactgctggg cagtaggaaa tgaacggtca ttttaataat aaacagtgct gggtcagttg
     4981 gatgtccaca aggaaagaaa tgatcttgac cactacctca cgtcatgcac aaaaataaat
     5041 tccggagaga tcatccatct caatgtgaaa gttaagacaa aataaaactt catttacaag
     5101 gtcacataga gtatcttcat aaccttgagg tagccataca tttttttaaa gaagacacca
     5161 agagcaccaa aaataaagga aaagattgat aagttggatg acattaaagt gaggaacttc
     5221 tcatcatcaa agacatcaat aaaagagaga aaaggcaggc agagtggaaa ggatacacac
     5281 aatacctaca accggcaagt ggattcgtat ccagagtacg taaataatcc aacagacacg
     5341 taagaaaaag agcccctctc ccccccaaaa atgggcaaaa gaacattcca tacttataaa
     5401 ctgagttgta tacagttttc ttctcccaat tccaggtttt aaccaatttg tcctgggtca
     5461 ttggcacagc ctggtggctg gccttgggaa ctgtctgatc ccctggctca tcttgacatt
     5521 ttcttttatg tctggactgt ggacccttca ttttgcatgt cctgtgtcac tcagctgttt
     5581 ttctgccaca agtgcctcct ttctcgtgaa tacacaatac ataggtctct tcctcttttc
     5641 ctttggcttg ttaacttttg accatctatt ttaagactct ttctctccgg cttcttctcc
     5701 cttaccatcc ctcctgcctc cacccccacc cctttttcgt ttcccttttt gtacctcctt
     5761 gtttagccta aagacttttc gttgcaatgg ttatcctaaa atatctgaaa gcctttggcg
     5821 ggggggtagg ctcgtaccgc gggctccaga ggcagagcga agacttaagg cgggtggtta
     5881 gctaccttga gagtgatgtc atctcagtta tgttccattg tctgagacct ccaaaggtgg
     5941 gccggggtgg gggtgggggg tggttactga acgaagtaga ggctgggcag tgccttggtc
     6001 ttagtgttgt ttacggaggg ccctgtgcct tggatgggca gctggattat gataatcctt
     6061 tccaatctta tcaacaaagc cccaaatgga gcctttgagg atgcccagag cagcaactct
     6121 catctgggag agagggcctg tgtattggaa tgattctttt gtccttctgg tgggtcagga
     6181 tggggcacaa atactagcac tctaatggtt tcattcatag ttaaaaataa ttccgaggta
     6241 cccctccacc tgcagccctc aacatggggc tggttgacaa ccactgacct gaagggcagg
     6301 atttccctta tttccttctg tgccattctt ttcctccatt agcagcatct gtgaggtgaa
     6361 tcctttcggt tatcttcttc tttgtttctt tattttattt aaatccccac tcgggcagtg
     6421 cttgttccta tagcatattt tggacacatt accacagaga aaacacaatg gaaactctgc
     6481 aggtatgttt ggacttcaaa aattggggga cagtgtttaa aattcaagag tttaatgtag
     6541 taaatgtaga tttttgcctt ctcctgaaaa attggacgat ctgggtctct actcccagat
     6601 ggccccaagc aggcagagca ggggaggggc ttgtccctgc tcctgacaca ctccctcccc
     6661 gtggcttgca tcctttgcta cctgccgagt cccccaaggc attggggttt gtctcttcct
     6721 gaagtgggtg aaataggctc ttgtgggcta gcctgggaac ccaaccagta cgtttaatat
     6781 cgtttcagtg agaaaatgag ttccggcttt taaagagcag actttggaaa catcagagat
     6841 gctaatttgg gaatgcttgt agggtcctct cacagaacct gtacgtcttg aggtgatggc
     6901 ctgtgtctta tacttcttct gcgcggaatg tggccttagc atctagtagg tacttaatca
     6961 gtgatttacc tcctggggtt accgagtgcc ctttgtctgc tcctcccttc caggcggtaa
     7021 acagaaacac cttctccctg tggacctgaa cctgtcagtg ctgcccgaga ccagaccgct
     7081 gcctgattta tctagaacac ccactcgagc ccttgatact cgtgtggagt ttgagatcag
     7141 tcccctgtac agagctccct gtcttgagag aaatgacttc tttcctgatg aaagatccag
     7201 cccgtgttca ggaggcccta atgaggaaat gggaggacag agaggctgca ctaagcctgc
     7261 gctgttggct gatgcccgcc gaactggagt tcgtggcaat tccagagtgc ttgcattcca
     7321 aacccagggc gagggctggg taaaagtcca gctcatcccc tttaaagaaa aaaattcttc
     7381 ctctctgaca tttcgaggtt ttgacccaga tcagtcagag gccacggaga gctcgcaatg
     7441 tctggagagt gtgtttagtt cccgaggcct ggagctgcag agaagccgga gcgagccagt
     7501 gacctgctgg gcttgagttg aagccctgcc ttttcaagtg tgccctggcc cagcctcccc
     7561 agacctcaca gggtggacgg aaggagccag caccttcccc tcactccaaa gttatcttta
     7621 ccccctgaaa tcaaacatcg catgcagcac cctgtaaaac tgcttccttg taggcttgag
     7681 cgtgcttgct gagtaaacat cctcccatgt ttttggaact gaatccattt ctgcttcctg
     7741 gtcatcccat gcgggttctt tctgttctgg gtgccatgca gaatcaggtt aatagaaggc
     7801 agacctagcg ttgggcaggg gcacctaaaa tgacagtttc aaccttagta aattgtaagg
     7861 agagtaacag cgtcgtggga agaaagagaa aagacttaga cgaaaaatga aatgaaacag
     7921 agcctcccaa acatagtgct gccatcatgc tttgcaagtc agagttggtt cctgccgagc
     7981 cctgagacgg ggaccttcct ttgcatgggc tcaagctcag ttgtgcggtg gctgaaccac
     8041 agtcagcctc cgtctgtagg ttgtgtggct gcgtctggcc ctcctgaccc taacttgctc
     8101 ttgccccgtc tctcgtgact tatttgcctc ttctctctca cttccaccca cccgtgacat
     8161 ctccatcgcc atggcattga gcagccacgt catccaccat gttcacgggg tgatgggcca
     8221 actctgtgct gagccctact tccttctcgt tctccctcct gaagcaggag gctccctggc
     8281 agagctcaaa gccctttgtt tatttgatcc tgggcgtctt ggataaatca ggaatgtcct
     8341 gacatgaact taggcatgtt tttcttccat ggaaaaggaa actacggcaa atggtattta
     8401 agtaggcaga ggaccattcc gggggacttg cgttggtgcc atcaaggcca cattcctttg
     8461 gtcatcagac cagtaggtga cttctttatt ggcatgctct accctggagc ccagaaggtg
     8521 tgaatttgaa gcactttctc ccctgctgag agcttggcac agatgctctg gacttctttt
     8581 aaagccatgg agtaccatgg ttgtcttcca ggtggtcttc tttctgctgg gtgaaacctt
     8641 ggcccagagt agttgcttga agaaggctgc ttgggagttg gggtacagga taaggttgct
     8701 gcctggcctc tcattctcca gccgtcttga agttgcaatg atctcgatgt gtgatctact
     8761 ttgagtcagc tgccccagga cctgaacact tccgatcagg gctaggctct tgtggtacaa
     8821 ccggtcgcca gaaacctttg cgggtctgct ttctttggat gtggcgttgt gggaacccaa
     8881 gaattcctga gtctgtctag gtatatggag tccagtgagt ttagcatctg agttgttctg
     8941 gaactatttc tgggtctggg ggcaggaaaa tgttgggagc tatgtgcttt gctgcagtgg
     9001 agacctgtca gtaaccaaaa aacaagccca gtcagtctcc agagcattgg tgggaacccc
     9061 cccccccccc agctccctgt gagagtttcc aggtgtgaat gcccatgtat taccatggca
     9121 ggggcagtgc ggggtgggct ggcgggtgct catctcattt ggccacctgc cctggagaga
     9181 agaagccagt cgttggccac tgcaggtcca ggcttggctg ccgctctgtt ttgctgcttt
     9241 tcatgttgtc agaggatctt cttgggaaca aatgactcag caacctgaat ctctgggact
     9301 gagtagccta agtgcctttt gagaagtgat tggacctatc tgcacaggcc ctaaaattct
     9361 gagccccgga agagtggaga tccggactgg ttttactata gattcttcag gccgccgctc
     9421 aatttggttt ctccaattcc tgccccagta gaaggagctc actcatgggt tcacatgtga
     9481 tggccttcct tgtactgctg catcattaac taagtgactg agctggcctt ccattggcca
     9541 ggggagggct ctcactccag acacttcctc tgattggtgg gtggaccaat ggcaggtgaa
     9601 aacctttttt tgattggctg agggaagggt atcaaatctg aatttgcatt tcacttgctt
     9661 aaaggggagg ggggggaagc ccagcagctt tctaaaatct gtttaggggt gtgcgtatgc
     9721 tcctgtgtct gtgcctgctt ctgactgacc ggttgaagcc tcttcctgtg cctttttaac
     9781 ttcatgcact gtaagggaga ggagctgagg gctccccaaa cttttgtttc ggaggggcag
     9841 gggttgggaa gatgggcacg cagagggttg accaaactgg aagaaaatac tcgttcttta
     9901 gtgggaattt tccgatcagc cacacctcag cgttgcggca aaataaatct tggctcccct
     9961 ggaaacgcat gggcaaggta gggcagagct gctactgctg ctgttgccgc caccctgggc
    10021 ttcctgctga ctccgggctc ctccccgggg acaggagatt tgcattgacg tcccaggctg
    10081 tccagagctg agcccattat gggaaggacc tgccttctgg aagctgctgc tccccggtgc
    10141 ttggaaaggt accacatccg tctggttcac ggcggttatt tcatttattc ctcacctcaa
    10201 ccctgcgagg agagtcccat ggccggttca cccaagacaa tggggatttt ttgtagctga
    10261 aattgatgga ctaacaaact tcagttttcc tggtctcctt cctctcgaaa caggaggcag
    10321 aggagctttt gcatcaggaa aacaccatgg aaacgccatg agcattggtg gtggcggagt
    10381 gagggttaaa cagtgagcct tcctgggatc cttttgatgc cagtgtgtcg ggagcctgga
    10441 gatggagcgc tcagccgagt ggccaggacg ttctgtcaac atgaaagcag caaaaacagt
    10501 ttgtcggggc tcagcgctga ccccgggctg gtgtcatttt caggaagggc ttggcacaag
    10561 aaagaccacc gccaggcacg ggattggggg tgacgtcgga taactcagta ggcccctata
    10621 gacccttgaa ttttagaatc tgaaaagaaa atcagctgtt tgtcttttat tagatgagct
    10681 tggcaaacag gatcacttct tgaactcctc tcactggtcc ccaacaagag acatcttccc
    10741 aggttcagaa aaccctttgg gatttctcgg ttgtggctta ttgccttgga tggagggcag
    10801 gtcccttcta gggggcaggg gtgggcctgg cagtcctagt gcccgttatg gggatatgga
    10861 gtcgtaggtt tcctctgctg gcatcacgtg aagacggtgg atccacatca caggccttga
    10921 gctgaagacc agctcttggg cagcccactt cagcctctcc tttccttatt atctcaaatc
    10981 aaagtcttat cttctcccct tcatcttcct catttctttc ttaggcgcag tagtgggcct
    11041 gaagtccttg acctttgcgt ctgtgtgtgt gtcatcatgg cggctcaggg ttctagactt
    11101 ttcttgaatc tgcagcattg cgctttgtgc gcgtgacgcc cccccccccc cccgctccgc
    11161 cccgcccacc cggccccgcc ccaccaggcc ttcttcggag caagagagaa catgggcctc
    11221 catcgccact gaacctcagc caagccgtca tccccagcat ctggcctccc ttctctcctc
    11281 ccccgctttc ggccagtgtc tggggtggag gagcaaacaa cttgtgggag gagatggagg
    11341 gacagcctgg cctggagctc tctgcctcct ttcctcgtgt gccatttttc agcctcacgc
    11401 ttcctgtgga tggatgatgc cagcactgac atttgtcgcc gagcgcctcc tctccccaag
    11461 gacttccccg cgtgactctt ttggggtctg gaaagagtgg ctctggggcc ttgggagcca
    11521 gaggggacag ggggacctgg cccaggtcac agcagactgt gagacgggcg aggggtggga
    11581 gctggccgaa cccacccaag cgcaaaggca gccccggccc ctttgcgtca tgtctttttc
    11641 agcctgagga gagagcaact tgacctaaaa aaattgtata tatgtgggtg ttggatcctt
    11701 tgtgtctctt tgtccagaag ctgtgcatgt gatgagagcc caggtctctg tactgtacag
    11761 agaactgttg tccttcaggt ttgttttcag aaagatgtga tggatgggcc gtccttgatg
    11821 agaccgcgtg cccgctggga ctggccttcc tccaggatgc tgggcccggc gtggtgtttc
    11881 ttctgtcagt ggacgagaac tcagaggagt tcagctccat gagtaggtga caaactcctg
    11941 gagactcagc tgacgatggt gccggtgtgc agaagacagt tgtcatcctg tgggataagc
    12001 gtgtgcccgt ttgcatttat ttggaacaaa aaaaggagct gcctggcagc ctggctctct
    12061 gcaaggtgct gttgagcccc tggtttgtgt ggttctgtga ccacaagtgc tgatggatgt
    12121 ggcgccatcc cagtcttgtc ggtgaaccat caccagcctg cttattggaa accaggcgca
    12181 gcaaggaagc taggattcaa cgccctcctt ccctgcctcc cagcccgcct ccaaaagaat
    12241 ttaatctgct ggacaacaaa caatactgtt ataaaacttt gaaaacaaga gggcgcggcc
    12301 tccctgacaa ggagaagggc atgccgggta atgggcgagg gagcctgcca ggcccgagat
    12361 ggagccaggc aagagcccag ttggctgggc acctgggtgc ccgcccctgc ccagcccacc
    12421 agccgtgcca tccccagtcc agaggagaag gaaccgaaac aaaagtgggg gcagcggagc
    12481 tcttgaaaag gggaagttgt cctgagactg gcagacagag gtcctgataa cagaatgagg
    12541 ctggcatagc cgtgaaggta cagccaccag cctggccagc tgcaggggaa gcaggagaga
    12601 aaggtgctcc aagctggctt tggactccag acctaccctc tgtctgccca gcctcccacc
    12661 ccccacctag ggaagtggaa ccaggtcatg ggcatgaccc ggtccatgtg ctctgccagg
    12721 agccctgaaa ccagcattcc cagcggcagg aagatggatg atctgggctc cacttccggc
    12781 gctcctcccc cactctggct ggaacttgcg tcagtcatat caaggaggcc ctcgggttgg
    12841 gtgccaggga gagcaagctg cttccagccg catgaaatca cctggctact tgcaactagg
    12901 ggacaaaatc agcatctggt ttcagagaac cgagagtatt ttagaactcg agagttggag
    12961 cccaaactca gccgtgcagt ggagaccaca gaggcaccag ggtgctggag aacaaagcaa
    13021 gtatcgaagc accggctcct tgcagaacca ggcgtgctct catctccacc caagtttaat
    13081 gtgttgtaca gtcagtaata cccaccccca tctatgcaga aatattgcct aggactaccc
    13141 tcaccctcaa tcttcctcat aattaagttc aagaacagaa tgagacggta gtccagctac
    13201 agaacaggag gcagtgggca gaagagtagg agcacagact ttggagtcag acctggaatc
    13261 gacaccattc actagtcatg ggactgtgga caagtttttg aaccacactg aggatcagtt
    13321 tcttctcctg ccaaaaaggg aatactacct actccgcaag actgttgtga gaattcaaga
    13381 gcacagcttg gtgttcaaat tttatttcct tctcttccct agagcagcac atgatgttat
    13441 gtccaggagg cgtaaaaagt agaagggttt atctagagtc ctgaagaatt ggtagggaac
    13501 cggagagatg cagattcttc tttctcctgg ttatggtatc agaggaaata cagacatatt
    13561 ttcttagctt caaacaacca aaaaagatgg tgcaagtagg agatgagaaa tctaatttga
    13621 acaccatttg caaacctaat tttcaggcag aatttgaaaa caacacaaaa caaaactcca
    13681 ttcttttatt agaggattat ctacttagta caattataag acactaatct ttttgtgtca
    13741 cagtagagaa taaataagat tggcaattaa cggggtcata tttgaatgtc ctgactgctc
    13801 acgtatggct gggaaggcgg agcccgtgat ctacgtgact aggacacatg gaagtgttgc
    13861 cctggctcag gtgaaaccca cctttgtgta gtgtctagag cctcacaggc agaaagggtg
    13921 cttgtttcct gatgacgtga gaaaatatgg gaaaatgctt tgcacactgt gaaatagttt
    13981 acaaagcagg gcaatactaa tgtacatatt aacccagttt agtaacagct ttggctattt
    14041 tatttcgtca tatatataat aatctgtagg gactggttat ggaattaagt aacttagaat
    14101 tcatgagttt tgtattgcga ttgtctgtgt aaattaccag ctttgacttt cgtgttcttt
    14161 gagcatcact ttgtaactct tctctgtgcc tttctaatgg atccatatat catgtcccgt
    14221 cacaagtgga actgcaagaa gacacctctg ctcggggcag aggctgggtc ttccgatcgc
    14281 atctcccttc tttcttcagt gagatcctct tcttctggaa gctggtttca catggtggct
    14341 tagatttttc catctttgta tctagcacca tttgaaatca gtgttttagg agtaagaatt
    14401 gcagcacagc aaaaggccaa ccgcagagga gctgctgctc gtgggatcag cttccctcct
    14461 tctgccacct gagccggttc aagaaaagga agaacttgag aatcaaagta cactcttgag
    14521 tgtgttgggt tgtggaaggg gacagtgcag ggatggggtc gtgttcaata gaaactcaga
    14581 ggcttgagca gagccagagg ttgtgattgt ctttctgttg acagggagcg gcaaccccta
    14641 gcagtagcct gttggtaagg cctttgagca cacgcttggg caatgccggg ttgggtactt
    14701 gattgcaata ggcaagggga ggggtgtgga ccagaaggac tatctcatca catcagcact
    14761 gtccacctgc tcctagatgc cgtgaaacat tcagctgcag ttgccgagca gctgaaatca
    14821 gacttgccac ctgcactgtc aaggtgccgg accccaccga gcaccactgg acccatctct
    14881 tacacaggct gaccgatttc tcctggtgtt cagagtctgt ttttgtctag caccatttga
    14941 aatcggttat gatgtagggg gaaaagcagc agcctcgagg cctcatgcca agtctggtca
    15001 gcaacagcct ggggcttcct ggaagatgga tgcgcagaga gagggggagg aaggttatgc
    15061 tttttcctgc tagcttcttt aactacatct acaatacttt atgcacgggt aatagatcag
    15121 ttaatggatt tttcagaagc aaatcactaa aatttatctg atgtcctcgg tttgccgaaa
    15181 tgtggtagtg atgtaaacta taaattggtt gctgttgaat tatctttcag tcatgcatcc
    15241 tgaccttaat aaatgcttta ctgtacacaa tt
//
LOCUS       XR_004351858           15555 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X42, misc_RNA.
ACCESSION   XR_004351858
VERSION     XR_004351858.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15555
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15555
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15555
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X42"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gggagggagg gagagctcct gggggaagaa ggttctgctg gaggtcagtc tgctgtcgct
       61 tctcctcagg ccacttttgg agggttgttc agatcccaat gagaaggaaa atgtcaaagt
      121 agaatgagtg cagaggaggg ctgctggcat atgaggaatg gttaaagcac gggcagatat
      181 accccagaga ggggaaggtt tcagcagaac gagtttgctg ggcagagttt tgtgtattga
      241 aaggactgtg atgtgatgtg ggtgtcgggc ttattactct gcggcagtga cagggcggcc
      301 gctgttggtg cagggagctg ggtcattgtc cctccctttg agctgcgaag gactcgaggg
      361 aggaaagatg ggtggccctc tgagatagtg agccccttca gcggtgctct tggtgttcac
      421 aggtaagctg aatggccatg acgcagggaa tgctaataat aaaaagtcat aatagttgcc
      481 acttcctgaa tgcttgttgt gtagcaggca gtgtgaccca gggctttact tgtatggact
      541 cacttaatct cctacaacac tgggcagggg tatgagtagc tccttagccc tactttatag
      601 acgagaaaac ttagcctgag aaatgaagta acccacccaa ggttccatac attggcctcc
      661 agcccaaggc cagtctcctt gtattggtga aaggtgaggc cggatgacct gtagggtgtc
      721 ttacaacacc aggtttctaa gtctctatct ggtgggtcat cccagccatt tgaatggggt
      781 tgggcagctc tcttgggtcc agggcaggag tggcggttac tgctctcctg gtgacctcac
      841 tgggactggg aagtcagcag gggtattccg ttggctgtta ggaactggcc ttgccgggga
      901 agtggctggg gagcccccag gcttatctga gcatcccaga tccttgcatc cgatgtcctc
      961 taaccctctg gtgactctgg ggtcttggaa gcaccagtgg tccttttttg tgtcagcttc
     1021 cgcagaagct tcttgactgt gtcgtcagcg cactcagcct gcaggtgtcc ccccaccccc
     1081 ttagctctgt cactgcagaa gggcacagag tgatgtccag gggccatgac ctgccttgtt
     1141 ttggggggcc agagtgggat taaggagcca gctgtcctcc tactgtccta gttctccagg
     1201 ctctggcaac cgggaaagtc cttgcttcca tgggcagagt tccccgaaga gggcctaaca
     1261 ccaagcctga cacatagtca gccccaggca tgttttcttg gaataacaaa tgtgtaggac
     1321 tcacctgcct tctcagtgct caccctaggc cctgaggact ctggagattt tagagggagg
     1381 gcattggagg gtgggccgct cctgtcactc cacattcagt ggcactggga gaagcttctc
     1441 agcatcctcc tttgtgtttt aaggctgtta ctgtttctct gcttcggggg caagaacact
     1501 gaccttccag gcctgaacca gatcctaacc tgagaataac ggctgcccgc cagtcccaga
     1561 ggccttcaga gagctgaacc ttcatgtgtt gttccaacac cttccctccg taaatgaaac
     1621 actcacagga ctgcccttta tcccacggtt ctggtcatca tcccctccct actcttgagc
     1681 tctctgtgtg cataggaggt actcacatca tcaaacattt tgtgggacct tacttttgtt
     1741 aaggcttaat attatgaaaa taatgtacaa tgcatcccca atatcgcccc caaatatgac
     1801 attaaatatt atgttttaga ctgccccaag ccctcgccca cccaaggctc gtcagatgag
     1861 agccttgtcc cccctccagc tcctgacaag gccggcgctt tgctgaaagt ccagacctgt
     1921 gccctggtgt gcatgatggc tctgaggtct ttcctgtccc tctcaggctg tgggcaaggt
     1981 catgggcgtg ggcatgcccc ctgtgtgggg gagaaggcag tatggaagtt aaagtgcaag
     2041 tcagagttgt ttggggaacc cccatcctac ttgtgtttgt gacaactgct ctctagttct
     2101 gactcagctg agtgaagcaa tagctggtac cggggcagga aagaaatgcc atttttgaga
     2161 cacgtggcac tcatgtggtc atacagaggt tagtacagcc ccgtgaatca tcagttgccc
     2221 aggttctcca taccctagat atgtctggtc ctgctcagca cttccctctt tgatcaagaa
     2281 ccccaggggc agcagtaaca tctaagggtc ctagcctgtg cctggagggc atctggccaa
     2341 gacccctcat ttccccagcc gaatctggcc ggtggcacag atggcagggt ccgccgtgta
     2401 gggatggggt agagctcctt tcagtccgac tcatgtggcc cggccacact cccatctctc
     2461 tggaaattat ttccatccgt tgacggccag gatttcaaga acagccagcc aagagttgcg
     2521 ttgggttact ccccgagtcc caagaagact ttgcctcctg catttcaggc aaccctagaa
     2581 gcccctcatt caggggcttt ggctagtgga atgaccatgt ttactgagcc ccagcccact
     2641 gtcagaatag taggtgcccg tcccattgcc agcctgggtt ttgcctgagg ctgagccatg
     2701 agccctctgg ggcagtagct tagacttaac gttcagtggc ctagggtaag gcagacgttt
     2761 cggccttttc cattttccca ggaggtggcg ggagccagct tgggcaggac agtttggagc
     2821 ctggattttt ggcctgagag gcagactgac tcagtctgcc cagaagaaag cgtcaactta
     2881 tgaatagagc atactggcca cgatatctgc caccctaggc ctgaccttcc ccctaaacaa
     2941 acgtgccccg tcactacact gcccttggcg tattccacac gggagtctct gttggtgctg
     3001 gggctcactt ctgtttgtta aggagctgac ttggccctca ctcatcttct ttcaccctgt
     3061 agtcagggga gtcctgtgtt ctcagggcca gcgtctggca ggccacttac tgcctgctgc
     3121 ctggttccag ctccccgccc gtggcggcat tccgtgtctg catctgcatc tcacctctgc
     3181 caggacctac cctccagcac aggctgtccc tagcccttgt ctctcggatt ttcacttggc
     3241 acgtggtgca gcattgtgtc cttggagtgt ttgttttcac tgctggggcc ttgtttcact
     3301 tcagctcagc aacctgggca gaagtgccat ggtcctttgg gttgggaatt tgatgggaaa
     3361 aactcctcag tggttctggg gtagttgttt ctggagactg acgagatgcg gtctttaagg
     3421 ctgttagacg gaccacatca tggtcgttat tgttgatcga agctattaac ggcacggttc
     3481 tttcaggaac ccttttcccc atggataaca tcagacgtct aatctacaag taccgtttct
     3541 gacaaccgcc ccccccccga ctcagcacgt tttcagactt tttctaatta tatatactta
     3601 tagattctgt gtttttattt cttcttagag ttccctgaga ttagaatttc cttaccaggt
     3661 agttaactgt cccagcaatt tggcttttat ttggtactca agctttttcc tcggcactca
     3721 agctttttcc tcgaaggccc tcctctgtct tcagcctatc acctcaacat actccacctt
     3781 gtcgacttgg tcttgtcagt acgaagcgag gtgtggttgt gcctgattgg tacttggttg
     3841 aaagactgag attgccaggt actacaggtc tcttgaggtg ttactaggcc ttttcttcca
     3901 gtgcctggta tggtaccaac cacaaaagca tcatggtcca tcatcaccat catcatcata
     3961 gtgatactgg taccagctga acattaactc tgtgttgggc attgtgctga acgctcctgt
     4021 atctcatacc atcctcacca ggaaaacccc taggaagtat ggatgaagct gaaaatagga
     4081 acttaggaag gtcaaataag tcgttcaagt ctgtataact agtagaggct gtattaggat
     4141 gcacgttcag acctgtctca ctttagagtc tgagtttttc accactgtct gcattatcct
     4201 tgtttagtcg tatgtcctca cgaagtgttt gttgaatggc aagattgttc ccacagtctg
     4261 gctggcctct gaggtatcac taaccatgat gaggatagca cccaatattt ttgaatactc
     4321 agattgctag gctctgtaat aatgtgatgt aagtgacatg cgtcaggtta atctatgtaa
     4381 tctgcagagc tcaatgagga cgatttcccc cgttctgcag attaggaaac cgaggctcag
     4441 aaaggctgag ttaagttgct caagatcaca cagctaaaga gtgtataagt tgggatttag
     4501 ctgccagtta tctcttgaac agtgcgagcc tgttctcttg atcactatgt tattgtctac
     4561 aaggaaaaaa aagattaatt tctacctctg tccctttctt ctcgctgccc ccttccttag
     4621 cttgggatgc tttttctgtg tctgtttctt ttcatcctac tctttctgag aggcccaggc
     4681 tgcgctcaga ctatgtctgt ccacattgaa cgttgcaaaa ttagttactc gatttatatt
     4741 ttcttaaact ttacttgtag acatatcctc acgttaaagc atcacctgat ttaagattgg
     4801 tgctccatac tgtaagagta gacctatttg tctatcttat ttctgaccaa aggaatggaa
     4861 cagagagcct agttatagac ccgtgtatat ctggacacct gatttatgac aaagggggca
     4921 ctgctgggca gtaggaaatg aacggtcatt ttaataataa acagtgctgg gtcagttgga
     4981 tgtccacaag gaaagaaatg atcttgacca ctacctcacg tcatgcacaa aaataaattc
     5041 cggagagatc atccatctca atgtgaaagt taagacaaaa taaaacttca tttacaaggt
     5101 cacatagagt atcttcataa ccttgaggta gccatacatt tttttaaaga agacaccaag
     5161 agcaccaaaa ataaaggaaa agattgataa gttggatgac attaaagtga ggaacttctc
     5221 atcatcaaag acatcaataa aagagagaaa aggcaggcag agtggaaagg atacacacaa
     5281 tacctacaac cggcaagtgg attcgtatcc agagtacgta aataatccaa cagacacgta
     5341 agaaaaagag cccctctccc ccccaaaaat gggcaaaaga acattccata cttataaact
     5401 gagttgtata cagttttctt ctcccaattc caggttttaa ccaatttgtc ctgggtcatt
     5461 ggcacagcct ggtggctggc cttgggaact gtctgatccc ctggctcatc ttgacatttt
     5521 cttttatgtc tggactgtgg acccttcatt ttgcatgtcc tgtgtcactc agctgttttt
     5581 ctgccacaag tgcctccttt ctcgtgaata cacaatacat aggtctcttc ctcttttcct
     5641 ttggcttgtt aacttttgac catctatttt aagactcttt ctctccggct tcttctccct
     5701 taccatccct cctgcctcca cccccacccc tttttcgttt ccctttttgt acctccttgt
     5761 ttagcctaaa gacttttcgt tgcaatggtt atcctaaaat atctgaaagc ctttggcggg
     5821 ggggtaggct cgtaccgcgg gctccagagg cagagcgaag acttaaggcg ggtggttagc
     5881 taccttgaga gtgatgtcat ctcagttatg ttccattgtc tgagacctcc aaaggtgggc
     5941 cggggtgggg gtggggggtg gttactgaac gaagtagagg ctgggcagtg ccttggtctt
     6001 agtgttgttt acggagggcc ctgtgccttg gatgggcagc tggattatga taatcctttc
     6061 caatcttatc aacaaagccc caaatggagc ctttgaggat gcccagagca gcaactctca
     6121 tctgggagag agggcctgtg tattggaatg attcttttgt ccttctggtg ggtcaggatg
     6181 gggcacaaat actagcactc taatggtttc attcatagtt aaaaataatt ccgaggtacc
     6241 cctccacctg cagccctcaa catggggctg gttgacaacc actgacctga agggcaggat
     6301 ttcccttatt tccttctgtg ccattctttt cctccattag cagcatctgt gaggtgaatc
     6361 ctttcggtta tcttcttctt tgtttcttta ttttatttaa atccccactc gggcagtgct
     6421 tgttcctata gcatattttg gacacattac cacagagaaa acacaatgga aactctgcag
     6481 gtatgtttgg acttcaaaaa ttgggggaca gtgtttaaaa ttcaagagtt taatgtagta
     6541 aatgtagatt tttgccttct cctgaaaaat tggacgatct gggtctctac tcccagatgg
     6601 ccccaagcag gcagagcagg ggaggggctt gtccctgctc ctgacacact ccctccccgt
     6661 ggcttgcatc ctttgctacc tgccgagtcc cccaaggcat tggggtttgt ctcttcctga
     6721 agtgggtgaa ataggctctt gtgggctagc ctgggaaccc aaccagtacg tttaatatcg
     6781 tttcagtgag aaaatgagtt ccggctttta aagagcagac tttggaaaca tcagagatgc
     6841 taatttggga atgcttgtag ggtcctctca cagaacctgt acgtcttgag gtgatggcct
     6901 gtgtcttata cttcttctgc gcggaatgtg gccttagcat ctagtaggta cttaatcagt
     6961 gatttacctc ctggggttac cgagtgccct ttgtctgctc ctcccttcca ggcggtaaac
     7021 agaaacacct tctccctgtg gacctgaacc tgtcagtgct gcccgagacc agaccgctgc
     7081 ctgatttatc tagaacaccc actcgagccc ttgatactcg tgtggagttt gagatcagtc
     7141 ccctgtacag agctccctgt cttgagagaa atgacttctt tcctgatgaa agatccagcc
     7201 cgtgttcagg aggccctaat gaggaaatgg gaggacagag aggctgcact aagcctgcgc
     7261 tgttggctga tgcccgccga actggagttc gtggcaattc cagagtgctt gcattccaaa
     7321 cccagggcga gggctgggta aaagtccagc tcatcccctt taaagaaaaa aattcttcct
     7381 ctctgacatt tcgaggtttt gacccagatc agtcagaggc cacggagagc tcgcaatgtc
     7441 tggagagtgt gtttagttcc cgaggcctgg agctgcagag aagccggagc gagccagtga
     7501 cctgctgggc ttgagttgaa gccctgcctt ttcaagtgtg ccctggccca gcctccccag
     7561 acctcacagg gtggacggaa ggagccagca ccttcccctc actccaaagt tatctttacc
     7621 ccctgaaatc aaacatcgca tgcagcaccc tgtaaaactg cttccttgta ggcttgagcg
     7681 tgcttgctga gtaaacatcc tcccatgttt ttggaactga atccatttct gcttcctggt
     7741 catcccatgc gggttctttc tgttctgggt gccatgcaga atcaggttaa tagaaggcag
     7801 acctagcgtt gggcaggggc acctaaaatg acagtttcaa ccttagtaaa ttgtaaggag
     7861 agtaacagcg tcgtgggaag aaagagaaaa gacttagacg aaaaatgaaa tgaaacagag
     7921 cctcccaaac atagtgctgc catcatgctt tgcaagtcag agttggttcc tgccgagccc
     7981 tgagacgggg accttccttt gcatgggctc aagctcagtt gtgcggtggc tgaaccacag
     8041 tcagcctccg tctgtaggtt gtgtggctgc gtctggccct cctgacccta acttgctctt
     8101 gccccgtctc tcgtgactta tttgcctctt ctctctcact tccacccacc cgtgacatct
     8161 ccatcgccat ggcattgagc agccacgtca tccaccatgt tcacggggtg atgggccaac
     8221 tctgtgctga gccctacttc cttctcgttc tccctcctga agcaggaggc tccctggcag
     8281 agctcaaagc cctttgttta tttgatcctg ggcgtcttgg ataaatcagg aatgtcctga
     8341 catgaactta ggcatgtttt tcttccatgg aaaaggaaac tacggcaaat ggtatttaag
     8401 taggcagagg accattccgg gggacttgcg ttggtgccat caaggccaca ttcctttggt
     8461 catcagacca gtaggtgact tctttattgg catgctctac cctggagccc agaaggtgtg
     8521 aatttgaagc actttctccc ctgctgagag cttggcacag atgctctgga cttcttttaa
     8581 agccatggag taccatggtt gtcttccagg tggtcttctt tctgctgggt gaaaccttgg
     8641 cccagagtag ttgcttgaag aaggctgctt gggagttggg gtacaggata aggttgctgc
     8701 ctggcctctc attctccagc cgtcttgaag ttgcaatgat ctcgatgtgt gatctacttt
     8761 gagtcagctg ccccaggacc tgaacacttc cgatcagggc taggctcttg tggtacaacc
     8821 ggtcgccaga aacctttgcg ggtctgcttt ctttggatgt ggcgttgtgg gaacccaaga
     8881 attcctgagt ctgtctaggt atatggagtc cagtgagttt agcatctgag ttgttctgga
     8941 actatttctg ggtctggggg caggaaaatg ttgggagcta tgtgctttgc tgcagtggag
     9001 acctgtcagt aaccaaaaaa caagcccagt cagtctccag agcattggtg ggaacccccc
     9061 ccccccccag ctccctgtga gagtttccag gtgtgaatgc ccatgtatta ccatggcagg
     9121 ggcagtgcgg ggtgggctgg cgggtgctca tctcatttgg ccacctgccc tggagagaag
     9181 aagccagtcg ttggccactg caggtccagg cttggctgcc gctctgtttt gctgcttttc
     9241 atgttgtcag aggatcttct tgggaacaaa tgactcagca acctgaatct ctgggactga
     9301 gtagcctaag tgccttttga gaagtgattg gacctatctg cacaggccct aaaattctga
     9361 gccccggaag agtggagatc cggactggtt ttactataga ttcttcaggc cgccgctcaa
     9421 tttggtttct ccaattcctg ccccagtaga aggagctcac tcatggggta agcaggcaat
     9481 gttttaatta tgctttttgt ccttagaaaa ttccaggaag aaaaaagatc ctggtctgtg
     9541 gccaaaaaag cagaaaacaa cgaaaatcag cgacggctgt aattctggac ttgtctgtgg
     9601 cagaaagagt taataggacg gtggtctcag ggtgggggcc gttatattct cgggtccagg
     9661 agaagctcac gtggttcaag aaaagatgac gccacattta gtgtgggaca gccctgtctg
     9721 ggttctgggc gctgtcactc aaagagttaa gctagtctta tggctgggga gccctcaggg
     9781 aaggcctgag cctgcaggga ccaggccctc tacgccccag agcagtgagg tctggggtaa
     9841 aagaggggct gagaagtgtg gccaggaaag ccgagtgtag gcccaacttt tttttttgcc
     9901 ttgtttgacc agccttggca ctgccctctg gctctccagg ggaaaagctg cagttctgct
     9961 cttgcaacac aaggagcaga ctggagaatt tagatctgcg tcacagagct cagagagaga
    10021 gagaggagag aggggagaga gagagggaga gagagagaga gcgcgagcgc tccgtcgata
    10081 ggtctgctag caacagccgt gctgcagcag agagagagag agaaatcaag aaacaagtca
    10141 tagcaacacc gggcaccagg ttctgccagc tcacttgcca agcgttcaga aatctgtcag
    10201 gggccggagg cctctgggta gcctaggcta aggagatgac acgcaaggtg gcacgggcgg
    10261 ttcccgcggg gaggaggcga cgatgggtgg tccgatgggc ttcaggactt gatggcgtaa
    10321 cccccgtctt cccccacgag atttgcattg acgtcccagg ctgtccagag ctgagcccat
    10381 tatgggaagg acctgccttc tggaagctgc tgctccccgg tgcttggaaa ggtaccacat
    10441 ccgtctggtt cacggcggtt atttcattta ttcctcacct caaccctgcg aggagagtcc
    10501 catggccggt tcacccaaga caatggggat tttttgtagc tgaaattgat ggactaacaa
    10561 acttcagttt tcctggtctc cttcctctcg aaacaggagg cagaggagct tttgcatcag
    10621 gaaaacacca tggaaacgcc atgagcattg gtggtggcgg agtgagggtt aaacagtgag
    10681 ccttcctggg atccttttga tgccagtgtg tcgggagcct ggagatggag cgctcagccg
    10741 agtggccagg acgttctgtc aacatgaaag cagcaaaaac agtttgtcgg ggctcagcgc
    10801 tgaccccggg ctggtgtcat tttcaggaag ggcttggcac aagaaagacc accgccaggc
    10861 acgggattgg gggtgacgtc ggataactca gtaggcccct atagaccctt gaattttaga
    10921 atctgaaaag aaaatcagct gtttgtcttt tattagatga gcttggcaaa caggatcact
    10981 tcttgaactc ctctcactgg tccccaacaa gagacatctt cccaggttca gaaaaccctt
    11041 tgggatttct cggttgtggc ttattgcctt ggatggaggg caggtccctt ctagggggca
    11101 ggggtgggcc tggcagtcct agtgcccgtt atggggatat ggagtcgtag gtttcctctg
    11161 ctggcatcac gtgaagacgg tggatccaca tcacaggcct tgagctgaag accagctctt
    11221 gggcagccca cttcagcctc tcctttcctt attatctcaa atcaaagtct tatcttctcc
    11281 ccttcatctt cctcatttct ttcttaggcg cagtagtggg cctgaagtcc ttgacctttg
    11341 cgtctgtgtg tgtgtcatca tggcggctca gggttctaga cttttcttga atctgcagca
    11401 ttgcgctttg tgcgcgtgac gccccccccc ccccccgctc cgccccgccc acccggcccc
    11461 gccccaccag gccttcttcg gagcaagaga gaacatgggc ctccatcgcc actgaacctc
    11521 agccaagccg tcatccccag catctggcct cccttctctc ctcccccgct ttcggccagt
    11581 gtctggggtg gaggagcaaa caacttgtgg gaggagatgg agggacagcc tggcctggag
    11641 ctctctgcct cctttcctcg tgtgccattt ttcagcctca cgcttcctgt ggatggatga
    11701 tgccagcact gacatttgtc gccgagcgcc tcctctcccc aaggacttcc ccgcgtgact
    11761 cttttggggt ctggaaagag tggctctggg gccttgggag ccagagggga cagggggacc
    11821 tggcccaggt cacagcagac tgtgagacgg gcgaggggtg ggagctggcc gaacccaccc
    11881 aagcgcaaag gcagccccgg cccctttgcg tcatgtcttt ttcagcctga ggagagagca
    11941 acttgaccta aaaaaattgt atatatgtgg gtgttggatc ctttgtgtct ctttgtccag
    12001 aagctgtgca tgtgatgaga gcccaggtct ctgtactgta cagagaactg ttgtccttca
    12061 ggtttgtttt cagaaagatg tgatggatgg gccgtccttg atgagaccgc gtgcccgctg
    12121 ggactggcct tcctccagga tgctgggccc ggcgtggtgt ttcttctgtc agtggacgag
    12181 aactcagagg agttcagctc catgagtagg tgacaaactc ctggagactc agctgacgat
    12241 ggtgccggtg tgcagaagac agttgtcatc ctgtgggata agcgtgtgcc cgtttgcatt
    12301 tatttggaac aaaaaaagga gctgcctggc agcctggctc tctgcaaggt gctgttgagc
    12361 ccctggtttg tgtggttctg tgaccacaag tgctgatgga tgtggcgcca tcccagtctt
    12421 gtcggtgaac catcaccagc ctgcttattg gaaaccaggc gcagcaagga agctaggatt
    12481 caacgccctc cttccctgcc tcccagcccg cctccaaaag aatttaatct gctggacaac
    12541 aaacaatact gttataaaac tttgaaaaca agagggcgcg gcctccctga caaggagaag
    12601 ggcatgccgg gtaatgggcg agggagcctg ccaggcccga gatggagcca ggcaagagcc
    12661 cagttggctg ggcacctggg tgcccgcccc tgcccagccc accagccgtg ccatccccag
    12721 tccagaggag aaggaaccga aacaaaagtg ggggcagcgg agctcttgaa aaggggaagt
    12781 tgtcctgaga ctggcagaca gaggtcctga taacagaatg aggctggcat agccgtgaag
    12841 gtacagccac cagcctggcc agctgcaggg gaagcaggag agaaaggtgc tccaagctgg
    12901 ctttggactc cagacctacc ctctgtctgc ccagcctccc accccccacc tagggaagtg
    12961 gaaccaggtc atgggcatga cccggtccat gtgctctgcc aggagccctg aaaccagcat
    13021 tcccagcggc aggaagatgg atgatctggg ctccacttcc ggcgctcctc ccccactctg
    13081 gctggaactt gcgtcagtca tatcaaggag gccctcgggt tgggtgccag ggagagcaag
    13141 ctgcttccag ccgcatgaaa tcacctggct acttgcaact aggggacaaa atcagcatct
    13201 ggtttcagag aaccgagagt attttagaac tcgagagttg gagcccaaac tcagccgtgc
    13261 agtggagacc acagaggcac cagggtgctg gagaacaaag caagtatcga agcaccggct
    13321 ccttgcagaa ccaggcgtgc tctcatctcc acccaagttt aatgtgttgt acagtcagta
    13381 atacccaccc ccatctatgc agaaatattg cctaggacta ccctcaccct caatcttcct
    13441 cataattaag ttcaagaaca gaatgagacg gtagtccagc tacagaacag gaggcagtgg
    13501 gcagaagagt aggagcacag actttggagt cagacctgga atcgacacca ttcactagtc
    13561 atgggactgt ggacaagttt ttgaaccaca ctgaggatca gtttcttctc ctgccaaaaa
    13621 gggaatacta cctactccgc aagactgttg tgagaattca agagcacagc ttggtgttca
    13681 aattttattt ccttctcttc cctagagcag cacatgatgt tatgtccagg aggcgtaaaa
    13741 agtagaaggg tttatctaga gtcctgaaga attggtaggg aaccggagag atgcagattc
    13801 ttctttctcc tggttatggt atcagaggaa atacagacat attttcttag cttcaaacaa
    13861 ccaaaaaaga tggtgcaagt aggagatgag aaatctaatt tgaacaccat ttgcaaacct
    13921 aattttcagg cagaatttga aaacaacaca aaacaaaact ccattctttt attagaggat
    13981 tatctactta gtacaattat aagacactaa tctttttgtg tcacagtaga gaataaataa
    14041 gattggcaat taacggggtc atatttgaat gtcctgactg ctcacgtatg gctgggaagg
    14101 cggagcccgt gatctacgtg actaggacac atggaagtgt tgccctggct caggtgaaac
    14161 ccacctttgt gtagtgtcta gagcctcaca ggcagaaagg gtgcttgttt cctgatgacg
    14221 tgagaaaata tgggaaaatg ctttgcacac tgtgaaatag tttacaaagc agggcaatac
    14281 taatgtacat attaacccag tttagtaaca gctttggcta ttttatttcg tcatatatat
    14341 aataatctgt agggactggt tatggaatta agtaacttag aattcatgag ttttgtattg
    14401 cgattgtctg tgtaaattac cagctttgac tttcgtgttc tttgagcatc actttgtaac
    14461 tcttctctgt gcctttctaa tggatccata tatcatgtcc cgtcacaagt ggaactgcaa
    14521 gaagacacct ctgctcgggg cagaggctgg gtcttccgat cgcatctccc ttctttcttc
    14581 agtgagatcc tcttcttctg gaagctggtt tcacatggtg gcttagattt ttccatcttt
    14641 gtatctagca ccatttgaaa tcagtgtttt aggagtaaga attgcagcac agcaaaaggc
    14701 caaccgcaga ggagctgctg ctcgtgggat cagcttccct ccttctgcca cctgagccgg
    14761 ttcaagaaaa ggaagaactt gagaatcaaa gtacactctt gagtgtgttg ggttgtggaa
    14821 ggggacagtg cagggatggg gtcgtgttca atagaaactc agaggcttga gcagagccag
    14881 aggttgtgat tgtctttctg ttgacaggga gcggcaaccc ctagcagtag cctgttggta
    14941 aggcctttga gcacacgctt gggcaatgcc gggttgggta cttgattgca ataggcaagg
    15001 ggaggggtgt ggaccagaag gactatctca tcacatcagc actgtccacc tgctcctaga
    15061 tgccgtgaaa cattcagctg cagttgccga gcagctgaaa tcagacttgc cacctgcact
    15121 gtcaaggtgc cggaccccac cgagcaccac tggacccatc tcttacacag gctgaccgat
    15181 ttctcctggt gttcagagtc tgtttttgtc tagcaccatt tgaaatcggt tatgatgtag
    15241 ggggaaaagc agcagcctcg aggcctcatg ccaagtctgg tcagcaacag cctggggctt
    15301 cctggaagat ggatgcgcag agagaggggg aggaaggtta tgctttttcc tgctagcttc
    15361 tttaactaca tctacaatac tttatgcacg ggtaatagat cagttaatgg atttttcaga
    15421 agcaaatcac taaaatttat ctgatgtcct cggtttgccg aaatgtggta gtgatgtaaa
    15481 ctataaattg gttgctgttg aattatcttt cagtcatgca tcctgacctt aataaatgct
    15541 ttactgtaca caatt
//
LOCUS       XR_004351859           15494 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X43, misc_RNA.
ACCESSION   XR_004351859
VERSION     XR_004351859.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15494
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15494
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15494
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X43"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gggagggagg gagagctcct gggggaagaa ggttctgctg gaggtcagtc tgctgtcgct
       61 tctcctcagg ccacttttgg agggttgttc agatcccaat gagaaggaaa atgtcaaagt
      121 agaatgagtg cagaggaggg ctgctggcat atgaggaatg gttaaagcac gggcagatat
      181 accccagaga ggggaaggtt tcagcagaac gagtttgctg ggcagagttt tgtgtattga
      241 aaggactgtg atgtgatgtg ggtgtcgggc ttattactct gcggcagtga cagggcggcc
      301 gctgttggtg cagggagctg ggtcattgtc cctccctttg agctgcgaag gactcgaggg
      361 aggaaagatg ggtggccctc tgagatagtg agccccttca gcggtgctct tggtgttcac
      421 aggtaagctg aatggccatg acgcagggaa tgctaataat aaaaagtcat aatagttgcc
      481 acttcctgaa tgcttgttgt gtagcaggca gtgtgaccca gggctttact tgtatggact
      541 cacttaatct cctacaacac tgggcagggg tatgagtagc tccttagccc tactttatag
      601 acgagaaaac ttagcctgag aaatgaagta acccacccaa ggttccatac attggcctcc
      661 agcccaaggc cagtctcctt gtattggtga aaggtgaggc cggatgacct gtagggtgtc
      721 ttacaacacc aggtttctaa gtctctatct ggtgggtcat cccagccatt tgaatggggt
      781 tgggcagctc tcttgggtcc agggcaggag tggcggttac tgctctcctg gtgacctcac
      841 tgggactggg aagtcagcag gggtattccg ttggctgtta ggaactggcc ttgccgggga
      901 agtggctggg gagcccccag gcttatctga gcatcccaga tccttgcatc cgatgtcctc
      961 taaccctctg gtgactctgg ggtcttggaa gcaccagtgg tccttttttg tgtcagcttc
     1021 cgcagaagct tcttgactgt gtcgtcagcg cactcagcct gcaggtgtcc ccccaccccc
     1081 ttagctctgt cactgcagaa gggcacagag tgatgtccag gggccatgac ctgccttgtt
     1141 ttggggggcc agagtgggat taaggagcca gctgtcctcc tactgtccta gttctccagg
     1201 ctctggcaac cgggaaagtc cttgcttcca tgggcagagt tccccgaaga gggcctaaca
     1261 ccaagcctga cacatagtca gccccaggca tgttttcttg gaataacaaa tgtgtaggac
     1321 tcacctgcct tctcagtgct caccctaggc cctgaggact ctggagattt tagagggagg
     1381 gcattggagg gtgggccgct cctgtcactc cacattcagt ggcactggga gaagcttctc
     1441 agcatcctcc tttgtgtttt aaggctgtta ctgtttctct gcttcggggg caagaacact
     1501 gaccttccag gcctgaacca gatcctaacc tgagaataac ggctgcccgc cagtcccaga
     1561 ggccttcaga gagctgaacc ttcatgtgtt gttccaacac cttccctccg taaatgaaac
     1621 actcacagga ctgcccttta tcccacggtt ctggtcatca tcccctccct actcttgagc
     1681 tctctgtgtg cataggaggt actcacatca tcaaacattt tgtgggacct tacttttgtt
     1741 aaggcttaat attatgaaaa taatgtacaa tgcatcccca atatcgcccc caaatatgac
     1801 attaaatatt atgttttaga ctgccccaag ccctcgccca cccaaggctc gtcagatgag
     1861 agccttgtcc cccctccagc tcctgacaag gccggcgctt tgctgaaagt ccagacctgt
     1921 gccctggtgt gcatgatggc tctgaggtct ttcctgtccc tctcaggctg tgggcaaggt
     1981 catgggcgtg ggcatgcccc ctgtgtgggg gagaaggcag tatggaagtt aaagtgcaag
     2041 tcagagttgt ttggggaacc cccatcctac ttgtgtttgt gacaactgct ctctagttct
     2101 gactcagctg agtgaagcaa tagctggtac cggggcagga aagaaatgcc atttttgaga
     2161 cacgtggcac tcatgtggtc atacagaggt tagtacagcc ccgtgaatca tcagttgccc
     2221 aggttctcca taccctagat atgtctggtc ctgctcagca cttccctctt tgatcaagaa
     2281 ccccaggggc agcagtaaca tctaagggtc ctagcctgtg cctggagggc atctggccaa
     2341 gacccctcat ttccccagcc gaatctggcc ggtggcacag atggcagggt ccgccgtgta
     2401 gggatggggt agagctcctt tcagtccgac tcatgtggcc cggccacact cccatctctc
     2461 tggaaattat ttccatccgt tgacggccag gatttcaaga acagccagcc aagagttgcg
     2521 ttgggttact ccccgagtcc caagaagact ttgcctcctg catttcaggc aaccctagaa
     2581 gcccctcatt caggggcttt ggctagtgga atgaccatgt ttactgagcc ccagcccact
     2641 gtcagaatag taggtgcccg tcccattgcc agcctgggtt ttgcctgagg ctgagccatg
     2701 agccctctgg ggcagtagct tagacttaac gttcagtggc ctagggtaag gcagacgttt
     2761 cggccttttc cattttccca ggaggtggcg ggagccagct tgggcaggac agtttggagc
     2821 ctggattttt ggcctgagag gcagactgac tcagtctgcc cagaagaaag cgtcaactta
     2881 tgaatagagc atactggcca cgatatctgc caccctaggc ctgaccttcc ccctaaacaa
     2941 acgtgccccg tcactacact gcccttggcg tattccacac gggagtctct gttggtgctg
     3001 gggctcactt ctgtttgtta aggagctgac ttggccctca ctcatcttct ttcaccctgt
     3061 agtcagggga gtcctgtgtt ctcagggcca gcgtctggca ggccacttac tgcctgctgc
     3121 ctggttccag ctccccgccc gtggcggcat tccgtgtctg catctgcatc tcacctctgc
     3181 caggacctac cctccagcac aggctgtccc tagcccttgt ctctcggatt ttcacttggc
     3241 acgtggtgca gcattgtgtc cttggagtgt ttgttttcac tgctggggcc ttgtttcact
     3301 tcagctcagc aacctgggca gaagtgccat ggtcctttgg gttgggaatt tgatgggaaa
     3361 aactcctcag tggttctggg gtagttgttt ctggagactg acgagatgcg gtctttaagg
     3421 ctgttagacg gaccacatca tggtcgttat tgttgatcga agctattaac ggcacggttc
     3481 tttcaggaac ccttttcccc atggataaca tcagacgtct aatctacaag taccgtttct
     3541 gacaaccgcc ccccccccga ctcagcacgt tttcagactt tttctaatta tatatactta
     3601 tagattctgt gtttttattt cttcttagag ttccctgaga ttagaatttc cttaccaggt
     3661 agttaactgt cccagcaatt tggcttttat ttggtactca agctttttcc tcggcactca
     3721 agctttttcc tcgaaggccc tcctctgtct tcagcctatc acctcaacat actccacctt
     3781 gtcgacttgg tcttgtcagt acgaagcgag gtgtggttgt gcctgattgg tacttggttg
     3841 aaagactgag attgccaggt actacaggtc tcttgaggtg ttactaggcc ttttcttcca
     3901 gtgcctggta tggtaccaac cacaaaagca tcatggtcca tcatcaccat catcatcata
     3961 gtgatactgg taccagctga acattaactc tgtgttgggc attgtgctga acgctcctgt
     4021 atctcatacc atcctcacca ggaaaacccc taggaagtat ggatgaagct gaaaatagga
     4081 acttaggaag gtcaaataag tcgttcaagt ctgtataact agtagaggct gtattaggat
     4141 gcacgttcag acctgtctca ctttagagtc tgagtttttc accactgtct gcattatcct
     4201 tgtttagtcg tatgtcctca cgaagtgttt gttgaatggc aagattgttc ccacagtctg
     4261 gctggcctct gaggtatcac taaccatgat gaggatagca cccaatattt ttgaatactc
     4321 agattgctag gctctgtaat aatgtgatgt aagtgacatg cgtcaggtta atctatgtaa
     4381 tctgcagagc tcaatgagga cgatttcccc cgttctgcag attaggaaac cgaggctcag
     4441 aaaggctgag ttaagttgct caagatcaca cagctaaaga gtgtataagt tgggatttag
     4501 ctgccagtta tctcttgaac agtgcgagcc tgttctcttg atcactatgt tattgtctac
     4561 aaggaaaaaa aagattaatt tctacctctg tccctttctt ctcgctgccc ccttccttag
     4621 cttgggatgc tttttctgtg tctgtttctt ttcatcctac tctttctgag aggcccaggc
     4681 tgcgctcaga ctatgtctgt ccacattgaa cgttgcaaaa ttagttactc gatttatatt
     4741 ttcttaaact ttacttgtag acatatcctc acgttaaagc atcacctgat ttaagattgg
     4801 tgctccatac tgtaagagta gacctatttg tctatcttat ttctgaccaa aggaatggaa
     4861 cagagagcct agttatagac ccgtgtatat ctggacacct gatttatgac aaagggggca
     4921 ctgctgggca gtaggaaatg aacggtcatt ttaataataa acagtgctgg gtcagttgga
     4981 tgtccacaag gaaagaaatg atcttgacca ctacctcacg tcatgcacaa aaataaattc
     5041 cggagagatc atccatctca atgtgaaagt taagacaaaa taaaacttca tttacaaggt
     5101 cacatagagt atcttcataa ccttgaggta gccatacatt tttttaaaga agacaccaag
     5161 agcaccaaaa ataaaggaaa agattgataa gttggatgac attaaagtga ggaacttctc
     5221 atcatcaaag acatcaataa aagagagaaa aggcaggcag agtggaaagg atacacacaa
     5281 tacctacaac cggcaagtgg attcgtatcc agagtacgta aataatccaa cagacacgta
     5341 agaaaaagag cccctctccc ccccaaaaat gggcaaaaga acattccata cttataaact
     5401 gagttgtata cagttttctt ctcccaattc caggttttaa ccaatttgtc ctgggtcatt
     5461 ggcacagcct ggtggctggc cttgggaact gtctgatccc ctggctcatc ttgacatttt
     5521 cttttatgtc tggactgtgg acccttcatt ttgcatgtcc tgtgtcactc agctgttttt
     5581 ctgccacaag tgcctccttt ctcgtgaata cacaatacat aggtctcttc ctcttttcct
     5641 ttggcttgtt aacttttgac catctatttt aagactcttt ctctccggct tcttctccct
     5701 taccatccct cctgcctcca cccccacccc tttttcgttt ccctttttgt acctccttgt
     5761 ttagcctaaa gacttttcgt tgcaatggtt atcctaaaat atctgaaagc ctttggcggg
     5821 ggggtaggct cgtaccgcgg gctccagagg cagagcgaag acttaaggcg ggtggttagc
     5881 taccttgaga gtgatgtcat ctcagttatg ttccattgtc tgagacctcc aaaggtgggc
     5941 cggggtgggg gtggggggtg gttactgaac gaagtagagg ctgggcagtg ccttggtctt
     6001 agtgttgttt acggagggcc ctgtgccttg gatgggcagc tggattatga taatcctttc
     6061 caatcttatc aacaaagccc caaatggagc ctttgaggat gcccagagca gcaactctca
     6121 tctgggagag agggcctgtg tattggaatg attcttttgt ccttctggtg ggtcaggatg
     6181 gggcacaaat actagcactc taatggtttc attcatagtt aaaaataatt ccgaggtacc
     6241 cctccacctg cagccctcaa catggggctg gttgacaacc actgacctga agggcaggat
     6301 ttcccttatt tccttctgtg ccattctttt cctccattag cagcatctgt gaggtgaatc
     6361 ctttcggtta tcttcttctt tgtttcttta ttttatttaa atccccactc gggcagtgct
     6421 tgttcctata gcatattttg gacacattac cacagagaaa acacaatgga aactctgcag
     6481 gtatgtttgg acttcaaaaa ttgggggaca gtgtttaaaa ttcaagagtt taatgtagta
     6541 aatgtagatt tttgccttct cctgaaaaat tggacgatct gggtctctac tcccagatgg
     6601 ccccaagcag gcagagcagg ggaggggctt gtccctgctc ctgacacact ccctccccgt
     6661 ggcttgcatc ctttgctacc tgccgagtcc cccaaggcat tggggtttgt ctcttcctga
     6721 agtgggtgaa ataggctctt gtgggctagc ctgggaaccc aaccagtacg tttaatatcg
     6781 tttcagtgag aaaatgagtt ccggctttta aagagcagac tttggaaaca tcagagatgc
     6841 taatttggga atgcttgtag ggtcctctca cagaacctgt acgtcttgag gtgatggcct
     6901 gtgtcttata cttcttctgc gcggaatgtg gccttagcat ctagtaggta cttaatcagt
     6961 gatttacctc ctggggttac cgagtgccct ttgtctgctc ctcccttcca ggcggtaaac
     7021 agaaacacct tctccctgtg gacctgaacc tgtcagtgct gcccgagacc agaccgctgc
     7081 ctgatttatc tagaacaccc actcgagccc ttgatactcg tgtggagttt gagatcagtc
     7141 ccctgtacag agctccctgt cttgagagaa atgacttctt tcctgatgaa agatccagcc
     7201 cgtgttcagg aggccctaat gaggaaatgg gaggacagag aggctgcact aagcctgcgc
     7261 tgttggctga tgcccgccga actggagttc gtggcaattc cagagtgctt gcattccaaa
     7321 cccagggcga gggctgggta aaagtccagc tcatcccctt taaagaaaaa aattcttcct
     7381 ctctgacatt tcgaggtttt gacccagatc agtcagaggc cacggagagc tcgcaatgtc
     7441 tggagagtgt gtttagttcc cgaggcctgg agctgcagag aagccggagc gagccagtga
     7501 cctgctgggc ttgagttgaa gccctgcctt ttcaagtgtg ccctggccca gcctccccag
     7561 acctcacagg gtggacggaa ggagccagca ccttcccctc actccaaagt tatctttacc
     7621 ccctgaaatc aaacatcgca tgcagcaccc tgtaaaactg cttccttgta ggcttgagcg
     7681 tgcttgctga gtaaacatcc tcccatgttt ttggaactga atccatttct gcttcctggt
     7741 catcccatgc gggttctttc tgttctgggt gccatgcaga atcaggttaa tagaaggcag
     7801 acctagcgtt gggcaggggc acctaaaatg acagtttcaa ccttagtaaa ttgtaaggag
     7861 agtaacagcg tcgtgggaag aaagagaaaa gacttagacg aaaaatgaaa tgaaacagag
     7921 cctcccaaac atagtgctgc catcatgctt tgcaagtcag agttggttcc tgccgagccc
     7981 tgagacgggg accttccttt gcatgggctc aagctcagtt gtgcggtggc tgaaccacag
     8041 tcagcctccg tctgtaggtt gtgtggctgc gtctggccct cctgacccta acttgctctt
     8101 gccccgtctc tcgtgactta tttgcctctt ctctctcact tccacccacc cgtgacatct
     8161 ccatcgccat ggcattgagc agccacgtca tccaccatgt tcacggggtg atgggccaac
     8221 tctgtgctga gccctacttc cttctcgttc tccctcctga agcaggaggc tccctggcag
     8281 agctcaaagc cctttgttta tttgatcctg ggcgtcttgg ataaatcagg aatgtcctga
     8341 catgaactta ggcatgtttt tcttccatgg aaaaggaaac tacggcaaat ggtatttaag
     8401 taggcagagg accattccgg gggacttgcg ttggtgccat caaggccaca ttcctttggt
     8461 catcagacca gtaggtgact tctttattgg catgctctac cctggagccc agaaggtgtg
     8521 aatttgaagc actttctccc ctgctgagag cttggcacag atgctctgga cttcttttaa
     8581 agccatggag taccatggtt gtcttccagg tggtcttctt tctgctgggt gaaaccttgg
     8641 cccagagtag ttgcttgaag aaggctgctt gggagttggg gtacaggata aggttgctgc
     8701 ctggcctctc attctccagc cgtcttgaag ttgcaatgat ctcgatgtgt gatctacttt
     8761 gagtcagctg ccccaggacc tgaacacttc cgatcagggc taggctcttg tggtacaacc
     8821 ggtcgccaga aacctttgcg ggtctgcttt ctttggatgt ggcgttgtgg gaacccaaga
     8881 attcctgagt ctgtctaggt atatggagtc cagtgagttt agcatctgag ttgttctgga
     8941 actatttctg ggtctggggg caggaaaatg ttgggagcta tgtgctttgc tgcagtggag
     9001 acctgtcagt aaccaaaaaa caagcccagt cagtctccag agcattggtg ggaacccccc
     9061 ccccccccag ctccctgtga gagtttccag gtgtgaatgc ccatgtatta ccatggcagg
     9121 ggcagtgcgg ggtgggctgg cgggtgctca tctcatttgg ccacctgccc tggagagaag
     9181 aagccagtcg ttggccactg caggtccagg cttggctgcc gctctgtttt gctgcttttc
     9241 atgttgtcag aggatcttct tgggaacaaa tgactcagca acctgaatct ctgggactga
     9301 gtagcctaag tgccttttga gaagtgattg gacctatctg cacaggccct aaaattctga
     9361 gccccggaag agtggagatc cggactggtt ttactataga ttcttcaggc cgccgctcaa
     9421 tttggtttct ccaattcctg ccccagtaga aggagctcac tcatggggta agcaggcaat
     9481 gttttaatta tgctttttgt ccttagaaaa ttccaggaag aaaaaagatc ctggtctgtg
     9541 gccaaaaaag cagaaaacaa cgaaaatcag cgacggctgt aattctggac ttgtctgtgg
     9601 cagaaagagt taataggacg gtggtctcag ggtgggggcc gttatattct cgggtccagg
     9661 agaagctcac gtggttcaag aaaagatgac gccacattta gtgtgggaca gccctgtctg
     9721 ggttctgggc gctgtcactc aaagagttaa gctagtctta tggctgggga gccctcaggg
     9781 aaggcctgag cctgcaggga ccaggccctc tacgccccag agcagtgagg tctggggtaa
     9841 aagaggggct gagaagtgtg gccaggaaag ccgagtgtag gcccaacttt tttttttgcc
     9901 ttgtttgacc agccttggca ctgccctctg gctctccagg ggaaaagctg cagttctgct
     9961 cttgcaacac aaggagcaga ctggagaatt tagatctgcg tcacagagct cagagagaga
    10021 gagaggagag aggggagaga gagagggaga gagagagaga gcgcgagcgc tccgtcgata
    10081 ggtctgctag caacagccgt gctgcagcag agagagagag agaaatcaag aaacaagtca
    10141 tagcaacacc gggcaccagg ttctgccagc tcacttgcca agcgttcaga aatctgtcag
    10201 gggccggagg cctctgggta gcctaggcta aggagatgac acgcaaggtg gcacgggcgg
    10261 ttcccgcggg gaggaggaga tttgcattga cgtcccaggc tgtccagagc tgagcccatt
    10321 atgggaagga cctgccttct ggaagctgct gctccccggt gcttggaaag gtaccacatc
    10381 cgtctggttc acggcggtta tttcatttat tcctcacctc aaccctgcga ggagagtccc
    10441 atggccggtt cacccaagac aatggggatt ttttgtagct gaaattgatg gactaacaaa
    10501 cttcagtttt cctggtctcc ttcctctcga aacaggaggc agaggagctt ttgcatcagg
    10561 aaaacaccat ggaaacgcca tgagcattgg tggtggcgga gtgagggtta aacagtgagc
    10621 cttcctggga tccttttgat gccagtgtgt cgggagcctg gagatggagc gctcagccga
    10681 gtggccagga cgttctgtca acatgaaagc agcaaaaaca gtttgtcggg gctcagcgct
    10741 gaccccgggc tggtgtcatt ttcaggaagg gcttggcaca agaaagacca ccgccaggca
    10801 cgggattggg ggtgacgtcg gataactcag taggccccta tagacccttg aattttagaa
    10861 tctgaaaaga aaatcagctg tttgtctttt attagatgag cttggcaaac aggatcactt
    10921 cttgaactcc tctcactggt ccccaacaag agacatcttc ccaggttcag aaaacccttt
    10981 gggatttctc ggttgtggct tattgccttg gatggagggc aggtcccttc tagggggcag
    11041 gggtgggcct ggcagtccta gtgcccgtta tggggatatg gagtcgtagg tttcctctgc
    11101 tggcatcacg tgaagacggt ggatccacat cacaggcctt gagctgaaga ccagctcttg
    11161 ggcagcccac ttcagcctct cctttcctta ttatctcaaa tcaaagtctt atcttctccc
    11221 cttcatcttc ctcatttctt tcttaggcgc agtagtgggc ctgaagtcct tgacctttgc
    11281 gtctgtgtgt gtgtcatcat ggcggctcag ggttctagac ttttcttgaa tctgcagcat
    11341 tgcgctttgt gcgcgtgacg cccccccccc cccccgctcc gccccgccca cccggccccg
    11401 ccccaccagg ccttcttcgg agcaagagag aacatgggcc tccatcgcca ctgaacctca
    11461 gccaagccgt catccccagc atctggcctc ccttctctcc tcccccgctt tcggccagtg
    11521 tctggggtgg aggagcaaac aacttgtggg aggagatgga gggacagcct ggcctggagc
    11581 tctctgcctc ctttcctcgt gtgccatttt tcagcctcac gcttcctgtg gatggatgat
    11641 gccagcactg acatttgtcg ccgagcgcct cctctcccca aggacttccc cgcgtgactc
    11701 ttttggggtc tggaaagagt ggctctgggg ccttgggagc cagaggggac agggggacct
    11761 ggcccaggtc acagcagact gtgagacggg cgaggggtgg gagctggccg aacccaccca
    11821 agcgcaaagg cagccccggc ccctttgcgt catgtctttt tcagcctgag gagagagcaa
    11881 cttgacctaa aaaaattgta tatatgtggg tgttggatcc tttgtgtctc tttgtccaga
    11941 agctgtgcat gtgatgagag cccaggtctc tgtactgtac agagaactgt tgtccttcag
    12001 gtttgttttc agaaagatgt gatggatggg ccgtccttga tgagaccgcg tgcccgctgg
    12061 gactggcctt cctccaggat gctgggcccg gcgtggtgtt tcttctgtca gtggacgaga
    12121 actcagagga gttcagctcc atgagtaggt gacaaactcc tggagactca gctgacgatg
    12181 gtgccggtgt gcagaagaca gttgtcatcc tgtgggataa gcgtgtgccc gtttgcattt
    12241 atttggaaca aaaaaaggag ctgcctggca gcctggctct ctgcaaggtg ctgttgagcc
    12301 cctggtttgt gtggttctgt gaccacaagt gctgatggat gtggcgccat cccagtcttg
    12361 tcggtgaacc atcaccagcc tgcttattgg aaaccaggcg cagcaaggaa gctaggattc
    12421 aacgccctcc ttccctgcct cccagcccgc ctccaaaaga atttaatctg ctggacaaca
    12481 aacaatactg ttataaaact ttgaaaacaa gagggcgcgg cctccctgac aaggagaagg
    12541 gcatgccggg taatgggcga gggagcctgc caggcccgag atggagccag gcaagagccc
    12601 agttggctgg gcacctgggt gcccgcccct gcccagccca ccagccgtgc catccccagt
    12661 ccagaggaga aggaaccgaa acaaaagtgg gggcagcgga gctcttgaaa aggggaagtt
    12721 gtcctgagac tggcagacag aggtcctgat aacagaatga ggctggcata gccgtgaagg
    12781 tacagccacc agcctggcca gctgcagggg aagcaggaga gaaaggtgct ccaagctggc
    12841 tttggactcc agacctaccc tctgtctgcc cagcctccca ccccccacct agggaagtgg
    12901 aaccaggtca tgggcatgac ccggtccatg tgctctgcca ggagccctga aaccagcatt
    12961 cccagcggca ggaagatgga tgatctgggc tccacttccg gcgctcctcc cccactctgg
    13021 ctggaacttg cgtcagtcat atcaaggagg ccctcgggtt gggtgccagg gagagcaagc
    13081 tgcttccagc cgcatgaaat cacctggcta cttgcaacta ggggacaaaa tcagcatctg
    13141 gtttcagaga accgagagta ttttagaact cgagagttgg agcccaaact cagccgtgca
    13201 gtggagacca cagaggcacc agggtgctgg agaacaaagc aagtatcgaa gcaccggctc
    13261 cttgcagaac caggcgtgct ctcatctcca cccaagttta atgtgttgta cagtcagtaa
    13321 tacccacccc catctatgca gaaatattgc ctaggactac cctcaccctc aatcttcctc
    13381 ataattaagt tcaagaacag aatgagacgg tagtccagct acagaacagg aggcagtggg
    13441 cagaagagta ggagcacaga ctttggagtc agacctggaa tcgacaccat tcactagtca
    13501 tgggactgtg gacaagtttt tgaaccacac tgaggatcag tttcttctcc tgccaaaaag
    13561 ggaatactac ctactccgca agactgttgt gagaattcaa gagcacagct tggtgttcaa
    13621 attttatttc cttctcttcc ctagagcagc acatgatgtt atgtccagga ggcgtaaaaa
    13681 gtagaagggt ttatctagag tcctgaagaa ttggtaggga accggagaga tgcagattct
    13741 tctttctcct ggttatggta tcagaggaaa tacagacata ttttcttagc ttcaaacaac
    13801 caaaaaagat ggtgcaagta ggagatgaga aatctaattt gaacaccatt tgcaaaccta
    13861 attttcaggc agaatttgaa aacaacacaa aacaaaactc cattctttta ttagaggatt
    13921 atctacttag tacaattata agacactaat ctttttgtgt cacagtagag aataaataag
    13981 attggcaatt aacggggtca tatttgaatg tcctgactgc tcacgtatgg ctgggaaggc
    14041 ggagcccgtg atctacgtga ctaggacaca tggaagtgtt gccctggctc aggtgaaacc
    14101 cacctttgtg tagtgtctag agcctcacag gcagaaaggg tgcttgtttc ctgatgacgt
    14161 gagaaaatat gggaaaatgc tttgcacact gtgaaatagt ttacaaagca gggcaatact
    14221 aatgtacata ttaacccagt ttagtaacag ctttggctat tttatttcgt catatatata
    14281 ataatctgta gggactggtt atggaattaa gtaacttaga attcatgagt tttgtattgc
    14341 gattgtctgt gtaaattacc agctttgact ttcgtgttct ttgagcatca ctttgtaact
    14401 cttctctgtg cctttctaat ggatccatat atcatgtccc gtcacaagtg gaactgcaag
    14461 aagacacctc tgctcggggc agaggctggg tcttccgatc gcatctccct tctttcttca
    14521 gtgagatcct cttcttctgg aagctggttt cacatggtgg cttagatttt tccatctttg
    14581 tatctagcac catttgaaat cagtgtttta ggagtaagaa ttgcagcaca gcaaaaggcc
    14641 aaccgcagag gagctgctgc tcgtgggatc agcttccctc cttctgccac ctgagccggt
    14701 tcaagaaaag gaagaacttg agaatcaaag tacactcttg agtgtgttgg gttgtggaag
    14761 gggacagtgc agggatgggg tcgtgttcaa tagaaactca gaggcttgag cagagccaga
    14821 ggttgtgatt gtctttctgt tgacagggag cggcaacccc tagcagtagc ctgttggtaa
    14881 ggcctttgag cacacgcttg ggcaatgccg ggttgggtac ttgattgcaa taggcaaggg
    14941 gaggggtgtg gaccagaagg actatctcat cacatcagca ctgtccacct gctcctagat
    15001 gccgtgaaac attcagctgc agttgccgag cagctgaaat cagacttgcc acctgcactg
    15061 tcaaggtgcc ggaccccacc gagcaccact ggacccatct cttacacagg ctgaccgatt
    15121 tctcctggtg ttcagagtct gtttttgtct agcaccattt gaaatcggtt atgatgtagg
    15181 gggaaaagca gcagcctcga ggcctcatgc caagtctggt cagcaacagc ctggggcttc
    15241 ctggaagatg gatgcgcaga gagaggggga ggaaggttat gctttttcct gctagcttct
    15301 ttaactacat ctacaatact ttatgcacgg gtaatagatc agttaatgga tttttcagaa
    15361 gcaaatcact aaaatttatc tgatgtcctc ggtttgccga aatgtggtag tgatgtaaac
    15421 tataaattgg ttgctgttga attatctttc agtcatgcat cctgacctta ataaatgctt
    15481 tactgtacac aatt
//
LOCUS       XR_004351860           15819 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X44, misc_RNA.
ACCESSION   XR_004351860
VERSION     XR_004351860.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15819
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15819
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15819
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X44"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 agggagggag ggagagctcc tgggggaaga aggttctgct ggaggtcagt ctgctgtcgc
       61 ttctcctcag gccacttttg gagggttgtt cagatcccaa tgagaaggaa aatgtcaaag
      121 tagaatgagt gcagaggagg gctgctggca tatgaggaat ggttaaagca cgggcagata
      181 taccccagag aggggaaggt ttcagcagaa cgagtttgct gggcagagtt ttgtgtattg
      241 aaaggactgt gatgtgatgt gggtgtcggg cttattactc tgcggcagtg acagggcggc
      301 cgctgttggt gcagggagct gggtcattgt ccctcccttt gagctgcgaa ggactcgagg
      361 gaggaaagat gggtggccct ctgagatagt gagccccttc agcggtgctc ttggtgttca
      421 caggtaagct gaatggccat gacgcaggga atgctaataa taaaaagtca taatagttgc
      481 cacttcctga atgcttgttg tgtagcaggc agtgtgaccc agggctttac ttgtatggac
      541 tcacttaatc tcctacaaca ctgggcaggg gtatgagtag ctccttagcc ctactttata
      601 gacgagaaaa cttagcctga gaaatgaagt aacccaccca aggttccata cattggcctc
      661 cagcccaagg ccagtctcct tgtattggtg aaaggtgagg ccggatgacc tgtagggtgt
      721 cttacaacac caggtttcta agtctctatc tggtgggtca tcccagccat ttgaatgggg
      781 ttgggcagct ctcttgggtc cagggcagga gtggcggtta ctgctctcct ggtgacctca
      841 ctgggactgg gaagtcagca ggggtattcc gttggctgtt aggaactggc cttgccgggg
      901 aagtggctgg ggagccccca ggcttatctg agcatcccag atccttgcat ccgatgtcct
      961 ctaaccctct ggtgactctg gggtcttgga agcaccagtg gtcctttttt gtgtcagctt
     1021 ccgcagaagc ttcttgactg tgtcgtcagc gcactcagcc tgcaggtgtc cccccacccc
     1081 cttagctctg tcactgcaga agggcacaga gtgatgtcca ggggccatga cctgccttgt
     1141 tttggggggc cagagtggga ttaaggagcc agctgtcctc ctactgtcct agttctccag
     1201 gctctggcaa ccgggaaagt ccttgcttcc atgggcagag ttccccgaag agggcctaac
     1261 accaagcctg acacatagtc agccccaggc atgttttctt ggaataacaa atgtgtagga
     1321 ctcacctgcc ttctcagtgc tcaccctagg ccctgaggac tctggagatt ttagagggag
     1381 ggcattggag ggtgggccgc tcctgtcact ccacattcag tggcactggg agaagcttct
     1441 cagcatcctc ctttgtgttt taaggctgtt actgtttctc tgcttcgggg gcaagaacac
     1501 tgaccttcca ggcctgaacc agatcctaac ctgagaataa cggctgcccg ccagtcccag
     1561 aggccttcag agagctgaac cttcatgtgt tgttccaaca ccttccctcc gtaaatgaaa
     1621 cactcacagg actgcccttt atcccacggt tctggtcatc atcccctccc tactcttgag
     1681 ctctctgtgt gcataggagg tactcacatc atcaaacatt ttgtgggacc ttacttttgt
     1741 taaggcttaa tattatgaaa ataatgtaca atgcatcccc aatatcgccc ccaaatatga
     1801 cattaaatat tatgttttag actgccccaa gccctcgccc acccaaggct cgtcagatga
     1861 gagccttgtc ccccctccag ctcctgacaa ggccggcgct ttgctgaaag tccagacctg
     1921 tgccctggtg tgcatgatgg ctctgaggtc tttcctgtcc ctctcaggct gtgggcaagg
     1981 tcatgggcgt gggcatgccc cctgtgtggg ggagaaggca gtatggaagt taaagtgcaa
     2041 gtcagagttg tttggggaac ccccatccta cttgtgtttg tgacaactgc tctctagttc
     2101 tgactcagct gagtgaagca atagctggta ccggggcagg aaagaaatgc catttttgag
     2161 acacgtggca ctcatgtggt catacagagg ttagtacagc cccgtgaatc atcagttgcc
     2221 caggttctcc ataccctaga tatgtctggt cctgctcagc acttccctct ttgatcaaga
     2281 accccagggg cagcagtaac atctaagggt cctagcctgt gcctggaggg catctggcca
     2341 agacccctca tttccccagc cgaatctggc cggtggcaca gatggcaggg tccgccgtgt
     2401 agggatgggg tagagctcct ttcagtccga ctcatgtggc ccggccacac tcccatctct
     2461 ctggaaatta tttccatccg ttgacggcca ggatttcaag aacagccagc caagagttgc
     2521 gttgggttac tccccgagtc ccaagaagac tttgcctcct gcatttcagg caaccctaga
     2581 agcccctcat tcaggggctt tggctagtgg aatgaccatg tttactgagc cccagcccac
     2641 tgtcagaata gtaggtgccc gtcccattgc cagcctgggt tttgcctgag gctgagccat
     2701 gagccctctg gggcagtagc ttagacttaa cgttcagtgg cctagggtaa ggcagacgtt
     2761 tcggcctttt ccattttccc aggaggtggc gggagccagc ttgggcagga cagtttggag
     2821 cctggatttt tggcctgaga ggcagactga ctcagtctgc ccagaagaaa gcgtcaactt
     2881 atgaatagag catactggcc acgatatctg ccaccctagg cctgaccttc cccctaaaca
     2941 aacgtgcccc gtcactacac tgcccttggc gtattccaca cgggagtctc tgttggtgct
     3001 ggggctcact tctgtttgtt aaggagctga cttggccctc actcatcttc tttcaccctg
     3061 tagtcagggg agtcctgtgt tctcagggcc agcgtctggc aggccactta ctgcctgctg
     3121 cctggttcca gctccccgcc cgtggcggca ttccgtgtct gcatctgcat ctcacctctg
     3181 ccaggaccta ccctccagca caggctgtcc ctagcccttg tctctcggat tttcacttgg
     3241 cacgtggtgc agcattgtgt ccttggagtg tttgttttca ctgctggggc cttgtttcac
     3301 ttcagctcag caacctgggc agaagtgcca tggtcctttg ggttgggaat ttgatgggaa
     3361 aaactcctca gtggttctgg ggtagttgtt tctggagact gacgagatgc ggtctttaag
     3421 gctgttagac ggaccacatc atggtcgtta ttgttgatcg aagctattaa cggcacggtt
     3481 ctttcaggaa cccttttccc catggataac atcagacgtc taatctacaa gtaccgtttc
     3541 tgacaaccgc cccccccccg actcagcacg ttttcagact ttttctaatt atatatactt
     3601 atagattctg tgtttttatt tcttcttaga gttccctgag attagaattt ccttaccagg
     3661 tagttaactg tcccagcaat ttggctttta tttggtactc aagctttttc ctcggcactc
     3721 aagctttttc ctcgaaggcc ctcctctgtc ttcagcctat cacctcaaca tactccacct
     3781 tgtcgacttg gtcttgtcag tacgaagcga ggtgtggttg tgcctgattg gtacttggtt
     3841 gaaagactga gattgccagg tactacaggt ctcttgaggt gttactaggc cttttcttcc
     3901 agtgcctggt atggtaccaa ccacaaaagc atcatggtcc atcatcacca tcatcatcat
     3961 agtgatactg gtaccagctg aacattaact ctgtgttggg cattgtgctg aacgctcctg
     4021 tatctcatac catcctcacc aggaaaaccc ctaggaagta tggatgaagc tgaaaatagg
     4081 aacttaggaa ggtcaaataa gtcgttcaag tctgtataac tagtagaggc tgtattagga
     4141 tgcacgttca gacctgtctc actttagagt ctgagttttt caccactgtc tgcattatcc
     4201 ttgtttagtc gtatgtcctc acgaagtgtt tgttgaatgg caagattgtt cccacagtct
     4261 ggctggcctc tgaggtatca ctaaccatga tgaggatagc acccaatatt tttgaatact
     4321 cagattgcta ggctctgtaa taatgtgatg taagtgacat gcgtcaggtt aatctatgta
     4381 atctgcagag ctcaatgagg acgatttccc ccgttctgca gattaggaaa ccgaggctca
     4441 gaaaggctga gttaagttgc tcaagatcac acagctaaag agtgtataag ttgggattta
     4501 gctgccagtt atctcttgaa cagtgcgagc ctgttctctt gatcactatg ttattgtcta
     4561 caaggaaaaa aaagattaat ttctacctct gtccctttct tctcgctgcc cccttcctta
     4621 gcttgggatg ctttttctgt gtctgtttct tttcatccta ctctttctga gaggcccagg
     4681 ctgcgctcag actatgtctg tccacattga acgttgcaaa attagttact cgatttatat
     4741 tttcttaaac tttacttgta gacatatcct cacgttaaag catcacctga tttaagattg
     4801 gtgctccata ctgtaagagt agacctattt gtctatctta tttctgacca aaggaatgga
     4861 acagagagcc tagttataga cccgtgtata tctggacacc tgatttatga caaagggggc
     4921 actgctgggc agtaggaaat gaacggtcat tttaataata aacagtgctg ggtcagttgg
     4981 atgtccacaa ggaaagaaat gatcttgacc actacctcac gtcatgcaca aaaataaatt
     5041 ccggagagat catccatctc aatgtgaaag ttaagacaaa ataaaacttc atttacaagg
     5101 tcacatagag tatcttcata accttgaggt agccatacat ttttttaaag aagacaccaa
     5161 gagcaccaaa aataaaggaa aagattgata agttggatga cattaaagtg aggaacttct
     5221 catcatcaaa gacatcaata aaagagagaa aaggcaggca gagtggaaag gatacacaca
     5281 atacctacaa ccggcaagtg gattcgtatc cagagtacgt aaataatcca acagacacgt
     5341 aagaaaaaga gcccctctcc cccccaaaaa tgggcaaaag aacattccat acttataaac
     5401 tgagttgtat acagttttct tctcccaatt ccaggtttta accaatttgt cctgggtcat
     5461 tggcacagcc tggtggctgg ccttgggaac tgtctgatcc cctggctcat cttgacattt
     5521 tcttttatgt ctggactgtg gacccttcat tttgcatgtc ctgtgtcact cagctgtttt
     5581 tctgccacaa gtgcctcctt tctcgtgaat acacaataca taggtctctt cctcttttcc
     5641 tttggcttgt taacttttga ccatctattt taagactctt tctctccggc ttcttctccc
     5701 ttaccatccc tcctgcctcc acccccaccc ctttttcgtt tccctttttg tacctccttg
     5761 tttagcctaa agacttttcg ttgcaatggt tatcctaaaa tatctgaaag cctttggcgg
     5821 gggggtaggc tcgtaccgcg ggctccagag gcagagcgaa gacttaaggc gggtggttag
     5881 ctaccttgag agtgatgtca tctcagttat gttccattgt ctgagacctc caaaggtggg
     5941 ccggggtggg ggtggggggt ggttactgaa cgaagtagag gctgggcagt gccttggtct
     6001 tagtgttgtt tacggagggc cctgtgcctt ggatgggcag ctggattatg ataatccttt
     6061 ccaatcttat caacaaagcc ccaaatggag cctttgagga tgcccagagc agcaactctc
     6121 atctgggaga gagggcctgt gtattggaat gattcttttg tccttctggt gggtcaggat
     6181 ggggcacaaa tactagcact ctaatggttt cattcatagt taaaaataat tccgaggtac
     6241 ccctccacct gcagccctca acatggggct ggttgacaac cactgacctg aagggcagga
     6301 tttcccttat ttccttctgt gccattcttt tcctccatta gcagcatctg tgaggtgaat
     6361 cctttcggtt atcttcttct ttgtttcttt attttattta aatccccact cgggcagtgc
     6421 ttgttcctat agcatatttt ggacacatta ccacagagaa aacacaatgg aaactctgca
     6481 ggtatgtttg gacttcaaaa attgggggac agtgtttaaa attcaagagt ttaatgtagt
     6541 aaatgtagat ttttgccttc tcctgaaaaa ttggacgatc tgggtctcta ctcccagatg
     6601 gccccaagca ggcagagcag gggaggggct tgtccctgct cctgacacac tccctccccg
     6661 tggcttgcat cctttgctac ctgccgagtc ccccaaggca ttggggtttg tctcttcctg
     6721 aagtgggtga aataggctct tgtgggctag cctgggaacc caaccagtac gtttaatatc
     6781 gtttcagtga gaaaatgagt tccggctttt aaagagcaga ctttggaaac atcagagatg
     6841 ctaatttggg aatgcttgta gggtcctctc acagaacctg tacgtcttga ggtgatggcc
     6901 tgtgtcttat acttcttctg cgcggaatgt ggccttagca tctagtaggt acttaatcag
     6961 tgatttacct cctggggtta ccgagtgccc tttgtctgct cctcccttcc aggcggtaaa
     7021 cagaaacacc ttctccctgt ggacctgaac ctgtcagtgc tgcccgagac cagaccgctg
     7081 cctgatttat ctagaacacc cactcgagcc cttgatactc gtgtggagtt tgagatcagt
     7141 cccctgtaca gagctccctg tcttgagaga aatgacttct ttcctgatga aagatccagc
     7201 ccgtgttcag gaggccctaa tgaggaaatg ggaggacaga gaggctgcac taagcctgcg
     7261 ctgttggctg atgcccgccg aactggagtt cgtggcaatt ccagagtgct tgcattccaa
     7321 acccagggcg agggctgggt aaaagtccag ctcatcccct ttaaagaaaa aaattcttcc
     7381 tctctgacat ttcgaggttt tgacccagat cagtcagagg ccacggagag ctcgcaatgt
     7441 ctggagagtg tgtttagttc ccgaggcctg gagctgcaga gaagccggag cgagccagtg
     7501 acctgctggg cttgagttga agccctgcct tttcaagtgt gccctggccc agcctcccca
     7561 gacctcacag ggtggacgga aggagccagc accttcccct cactccaaag ttatctttac
     7621 cccctgaaat caaacatcgc atgcagcacc ctgtaaaact gcttccttgt aggcttgagc
     7681 gtgcttgctg agtaaacatc ctcccatgtt tttggaactg aatccatttc tgcttcctgg
     7741 tcatcccatg cgggttcttt ctgttctggg tgccatgcag aatcaggtta atagaaggca
     7801 gacctagcgt tgggcagggg cacctaaaat gacagtttca accttagtaa attgtaagga
     7861 gagtaacagc gtcgtgggaa gaaagagaaa agacttagac gaaaaatgaa atgaaacaga
     7921 gcctcccaaa catagtgctg ccatcatgct ttgcaagtca gagttggttc ctgccgagcc
     7981 ctgagacggg gaccttcctt tgcatgggct caagctcagt tgtgcggtgg ctgaaccaca
     8041 gtcagcctcc gtctgtaggt tgtgtggctg cgtctggccc tcctgaccct aacttgctct
     8101 tgccccgtct ctcgtgactt atttgcctct tctctctcac ttccacccac ccgtgacatc
     8161 tccatcgcca tggcattgag cagccacgtc atccaccatg ttcacggggt gatgggccaa
     8221 ctctgtgctg agccctactt ccttctcgtt ctccctcctg aagcaggagg ctccctggca
     8281 gagctcaaag ccctttgttt atttgatcct gggcgtcttg gataaatcag gaatgtcctg
     8341 acatgaactt aggcatgttt ttcttccatg gaaaaggaaa ctacggcaaa tggtatttaa
     8401 gtaggcagag gaccattccg ggggacttgc gttggtgcca tcaaggccac attcctttgg
     8461 tcatcagacc agtaggtgac ttctttattg gcatgctcta ccctggagcc cagaaggtgt
     8521 gaatttgaag cactttctcc cctgctgaga gcttggcaca gatgctctgg acttctttta
     8581 aagccatgga gtaccatggt tgtcttccag gtggtcttct ttctgctggg tgaaaccttg
     8641 gcccagagta gttgcttgaa gaaggctgct tgggagttgg ggtacaggat aaggttgctg
     8701 cctggcctct cattctccag ccgtcttgaa gttgcaatga tctcgatgtg tgatctactt
     8761 tgagtcagct gccccaggac ctgaacactt ccgatcaggg ctaggctctt gtggtacaac
     8821 cggtcgccag aaacctttgc gggtctgctt tctttggatg tggcgttgtg ggaacccaag
     8881 aattcctgag tctgtctagg tatatggagt ccagtgagtt tagcatctga gttgttctgg
     8941 aactatttct gggtctgggg gcaggaaaat gttgggagct atgtgctttg ctgcagtgga
     9001 gacctgtcag taaccaaaaa acaagcccag tcagtctcca gagcattggt gggaaccccc
     9061 ccccccccca gctccctgtg agagtttcca ggtgtgaatg cccatgtatt accatggcag
     9121 gggcagtgcg gggtgggctg gcgggtgctc atctcatttg gccacctgcc ctggagagaa
     9181 gaagccagtc gttggccact gcaggtccag gcttggctgc cgctctgttt tgctgctttt
     9241 catgttgtca gaggatcttc ttgggaacaa atgactcagc aacctgaatc tctgggactg
     9301 agtagcctaa gtgccttttg agaagtgatt ggacctatct gcacaggccc taaaattctg
     9361 agccccggaa gagtggagat ccggactggt tttactatag attcttcagg ccgccgctca
     9421 atttggtttc tccaattcct gccccagtag aaggagctca ctcatggggt aagcaggcaa
     9481 tgttttaatt atgctttttg tccttagaaa attccaggaa gaaaaaagat cctggtctgt
     9541 ggccaaaaaa gcagaaaaca acgaaaatca gcgacggctg taattctgga cttgtctgtg
     9601 gcagaaagag ttaataggac ggtggtctca gggtgggggc cgttatattc tcgggtccag
     9661 gagaagctca cgtggttcaa gaaaagatga cgccacattt agtgtgggac agccctgtct
     9721 gggttctggg cgctgtcact caaagagtta agctagtctt atggctgggg agccctcagg
     9781 gaaggcctga gcctgcaggg accaggccct ctacgcccca gagcagtgag gtctggggta
     9841 aaagaggggc tgagaagtgt ggccaggaaa gccgagtgta ggcccaactt ttttttttgc
     9901 cttgtttgac cagccttggc actgccctct ggctctccag gggaaaagct gcagttctgc
     9961 tcttgcaaca caaggagcag actggagaat ttagatctgc gtcacagagc tcagagagag
    10021 agagaggaga gaggggagag agagagggag agagagagag agcgcgagcg ctccgtcgat
    10081 aggtctgcta gcaacagccg tgctgcagca gagagagaga gagaaatcaa gaaacaagtc
    10141 atagcaacac cgggcaccag gttctgccag ctcacttgcc aagcgttcag aaatctgtca
    10201 ggggccggag gcctctgggt agcctaggct aaggagatga cacgcaaggt ggcacgggcg
    10261 gttcccgcgg ggaggaggcg acgatgggtg gtccgatggg cttcaggact tgatggcgta
    10321 acccccgtct tcccccacga gatttgcatt gacgtcccag gctgtccaga gctgagccca
    10381 ttatgggaag gacctgcctt ctggaagctg ctgctccccg gtgcttggaa agtgatactc
    10441 tccacgcctc ctctccactg cacccacctg cggcagtccc accgtcttcc gtggacctct
    10501 cctgattacc ttcacaagaa gcagccctcc tcccatccgg ccagactccc atacgcttca
    10561 tgcctctttt gtgctactgt agatgtgctg tggttcttcg tgtataagtc ttatgtcacc
    10621 tattagattg tgagccccag gaagctaggg gaaagaaggg aaacatgtac ctgcgtggtg
    10681 ctttctgttt gccaggtacc acatccgtct ggttcacggc ggttatttca tttattcctc
    10741 acctcaaccc tgcgaggaga gtcccatggc cggttcaccc aagacaatgg ggattttttg
    10801 tagctgaaat tgatggacta acaaacttca gttttcctgg tctccttcct ctcgaaacag
    10861 gaggcagagg agcttttgca tcaggaaaac accatggaaa cgccatgagc attggtggtg
    10921 gcggagtgag ggttaaacag tgagccttcc tgggatcctt ttgatgccag tgtgtcggga
    10981 gcctggagat ggagcgctca gccgagtggc caggacgttc tgtcaacatg aaagcagcaa
    11041 aaacagtttg tcggggctca gcgctgaccc cgggctggtg tcattttcag gaagggcttg
    11101 gcacaagaaa gaccaccgcc aggcacggga ttgggggtga cgtcggataa ctcagtaggc
    11161 ccctatagac ccttgaattt tagaatctga aaagaaaatc agctgtttgt cttttattag
    11221 atgagcttgg caaacaggat cacttcttga actcctctca ctggtcccca acaagagaca
    11281 tcttcccagg ttcagaaaac cctttgggat ttctcggttg tggcttattg ccttggatgg
    11341 agggcaggtc ccttctaggg ggcaggggtg ggcctggcag tcctagtgcc cgttatgggg
    11401 atatggagtc gtaggtttcc tctgctggca tcacgtgaag acggtggatc cacatcacag
    11461 gccttgagct gaagaccagc tcttgggcag cccacttcag cctctccttt ccttattatc
    11521 tcaaatcaaa gtcttatctt ctccccttca tcttcctcat ttctttctta ggcgcagtag
    11581 tgggcctgaa gtccttgacc tttgcgtctg tgtgtgtgtc atcatggcgg ctcagggttc
    11641 tagacttttc ttgaatctgc agcattgcgc tttgtgcgcg tgacgccccc cccccccccc
    11701 gctccgcccc gcccacccgg ccccgcccca ccaggccttc ttcggagcaa gagagaacat
    11761 gggcctccat cgccactgaa cctcagccaa gccgtcatcc ccagcatctg gcctcccttc
    11821 tctcctcccc cgctttcggc cagtgtctgg ggtggaggag caaacaactt gtgggaggag
    11881 atggagggac agcctggcct ggagctctct gcctcctttc ctcgtgtgcc atttttcagc
    11941 ctcacgcttc ctgtggatgg atgatgccag cactgacatt tgtcgccgag cgcctcctct
    12001 ccccaaggac ttccccgcgt gactcttttg gggtctggaa agagtggctc tggggccttg
    12061 ggagccagag gggacagggg gacctggccc aggtcacagc agactgtgag acgggcgagg
    12121 ggtgggagct ggccgaaccc acccaagcgc aaaggcagcc ccggcccctt tgcgtcatgt
    12181 ctttttcagc ctgaggagag agcaacttga cctaaaaaaa ttgtatatat gtgggtgttg
    12241 gatcctttgt gtctctttgt ccagaagctg tgcatgtgat gagagcccag gtctctgtac
    12301 tgtacagaga actgttgtcc ttcaggtttg ttttcagaaa gatgtgatgg atgggccgtc
    12361 cttgatgaga ccgcgtgccc gctgggactg gccttcctcc aggatgctgg gcccggcgtg
    12421 gtgtttcttc tgtcagtgga cgagaactca gaggagttca gctccatgag taggtgacaa
    12481 actcctggag actcagctga cgatggtgcc ggtgtgcaga agacagttgt catcctgtgg
    12541 gataagcgtg tgcccgtttg catttatttg gaacaaaaaa aggagctgcc tggcagcctg
    12601 gctctctgca aggtgctgtt gagcccctgg tttgtgtggt tctgtgacca caagtgctga
    12661 tggatgtggc gccatcccag tcttgtcggt gaaccatcac cagcctgctt attggaaacc
    12721 aggcgcagca aggaagctag gattcaacgc cctccttccc tgcctcccag cccgcctcca
    12781 aaagaattta atctgctgga caacaaacaa tactgttata aaactttgaa aacaagaggg
    12841 cgcggcctcc ctgacaagga gaagggcatg ccgggtaatg ggcgagggag cctgccaggc
    12901 ccgagatgga gccaggcaag agcccagttg gctgggcacc tgggtgcccg cccctgccca
    12961 gcccaccagc cgtgccatcc ccagtccaga ggagaaggaa ccgaaacaaa agtgggggca
    13021 gcggagctct tgaaaagggg aagttgtcct gagactggca gacagaggtc ctgataacag
    13081 aatgaggctg gcatagccgt gaaggtacag ccaccagcct ggccagctgc aggggaagca
    13141 ggagagaaag gtgctccaag ctggctttgg actccagacc taccctctgt ctgcccagcc
    13201 tcccaccccc cacctaggga agtggaacca ggtcatgggc atgacccggt ccatgtgctc
    13261 tgccaggagc cctgaaacca gcattcccag cggcaggaag atggatgatc tgggctccac
    13321 ttccggcgct cctcccccac tctggctgga acttgcgtca gtcatatcaa ggaggccctc
    13381 gggttgggtg ccagggagag caagctgctt ccagccgcat gaaatcacct ggctacttgc
    13441 aactagggga caaaatcagc atctggtttc agagaaccga gagtatttta gaactcgaga
    13501 gttggagccc aaactcagcc gtgcagtgga gaccacagag gcaccagggt gctggagaac
    13561 aaagcaagta tcgaagcacc ggctccttgc agaaccaggc gtgctctcat ctccacccaa
    13621 gtttaatgtg ttgtacagtc agtaataccc acccccatct atgcagaaat attgcctagg
    13681 actaccctca ccctcaatct tcctcataat taagttcaag aacagaatga gacggtagtc
    13741 cagctacaga acaggaggca gtgggcagaa gagtaggagc acagactttg gagtcagacc
    13801 tggaatcgac accattcact agtcatggga ctgtggacaa gtttttgaac cacactgagg
    13861 atcagtttct tctcctgcca aaaagggaat actacctact ccgcaagact gttgtgagaa
    13921 ttcaagagca cagcttggtg ttcaaatttt atttccttct cttccctaga gcagcacatg
    13981 atgttatgtc caggaggcgt aaaaagtaga agggtttatc tagagtcctg aagaattggt
    14041 agggaaccgg agagatgcag attcttcttt ctcctggtta tggtatcaga ggaaatacag
    14101 acatattttc ttagcttcaa acaaccaaaa aagatggtgc aagtaggaga tgagaaatct
    14161 aatttgaaca ccatttgcaa acctaatttt caggcagaat ttgaaaacaa cacaaaacaa
    14221 aactccattc ttttattaga ggattatcta cttagtacaa ttataagaca ctaatctttt
    14281 tgtgtcacag tagagaataa ataagattgg caattaacgg ggtcatattt gaatgtcctg
    14341 actgctcacg tatggctggg aaggcggagc ccgtgatcta cgtgactagg acacatggaa
    14401 gtgttgccct ggctcaggtg aaacccacct ttgtgtagtg tctagagcct cacaggcaga
    14461 aagggtgctt gtttcctgat gacgtgagaa aatatgggaa aatgctttgc acactgtgaa
    14521 atagtttaca aagcagggca atactaatgt acatattaac ccagtttagt aacagctttg
    14581 gctattttat ttcgtcatat atataataat ctgtagggac tggttatgga attaagtaac
    14641 ttagaattca tgagttttgt attgcgattg tctgtgtaaa ttaccagctt tgactttcgt
    14701 gttctttgag catcactttg taactcttct ctgtgccttt ctaatggatc catatatcat
    14761 gtcccgtcac aagtggaact gcaagaagac acctctgctc ggggcagagg ctgggtcttc
    14821 cgatcgcatc tcccttcttt cttcagtgag atcctcttct tctggaagct ggtttcacat
    14881 ggtggcttag atttttccat ctttgtatct agcaccattt gaaatcagtg ttttaggagt
    14941 aagaattgca gcacagcaaa aggccaaccg cagaggagct gctgctcgtg ggatcagctt
    15001 ccctccttct gccacctgag ccggttcaag aaaaggaaga acttgagaat caaagtacac
    15061 tcttgagtgt gttgggttgt ggaaggggac agtgcaggga tggggtcgtg ttcaatagaa
    15121 actcagaggc ttgagcagag ccagaggttg tgattgtctt tctgttgaca gggagcggca
    15181 acccctagca gtagcctgtt ggtaaggcct ttgagcacac gcttgggcaa tgccgggttg
    15241 ggtacttgat tgcaataggc aaggggaggg gtgtggacca gaaggactat ctcatcacat
    15301 cagcactgtc cacctgctcc tagatgccgt gaaacattca gctgcagttg ccgagcagct
    15361 gaaatcagac ttgccacctg cactgtcaag gtgccggacc ccaccgagca ccactggacc
    15421 catctcttac acaggctgac cgatttctcc tggtgttcag agtctgtttt tgtctagcac
    15481 catttgaaat cggttatgat gtagggggaa aagcagcagc ctcgaggcct catgccaagt
    15541 ctggtcagca acagcctggg gcttcctgga agatggatgc gcagagagag ggggaggaag
    15601 gttatgcttt ttcctgctag cttctttaac tacatctaca atactttatg cacgggtaat
    15661 agatcagtta atggattttt cagaagcaaa tcactaaaat ttatctgatg tcctcggttt
    15721 gccgaaatgt ggtagtgatg taaactataa attggttgct gttgaattat ctttcagtca
    15781 tgcatcctga ccttaataaa tgctttactg tacacaatt
//
LOCUS       XR_004351861           15526 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X45, misc_RNA.
ACCESSION   XR_004351861
VERSION     XR_004351861.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15526
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15526
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..15526
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X45"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gggagggagg gagagctcct gggggaagaa ggttctgctg gaggtcagtc tgctgtcgct
       61 tctcctcagg ccacttttgg agggttgttc agatcccaat gagaaggaaa atgtcaaagt
      121 agaatgagtg cagaggaggg ctgctggcat atgaggaatg gttaaagcac gggcagatat
      181 accccagaga ggggaaggtt tcagcagaac gagtttgctg ggcagagttt tgtgtattga
      241 aaggactgtg atgtgatgtg ggtgtcgggc ttattactct gcggcagtga cagggcggcc
      301 gctgttggtg cagggagctg ggtcattgtc cctccctttg agctgcgaag gactcgaggg
      361 aggaaagatg ggtggccctc tgagatagtg agccccttca gcggtgctct tggtgttcac
      421 aggtaagctg aatggccatg acgcagggaa tgctaataat aaaaagtcat aatagttgcc
      481 acttcctgaa tgcttgttgt gtagcaggca gtgtgaccca gggctttact tgtatggact
      541 cacttaatct cctacaacac tgggcagggg tatgagtagc tccttagccc tactttatag
      601 acgagaaaac ttagcctgag aaatgaagta acccacccaa ggttccatac attggcctcc
      661 agcccaaggc cagtctcctt gtattggtga aaggtgaggc cggatgacct gtagggtgtc
      721 ttacaacacc aggtttctaa gtctctatct ggtgggtcat cccagccatt tgaatggggt
      781 tgggcagctc tcttgggtcc agggcaggag tggcggttac tgctctcctg gtgacctcac
      841 tgggactggg aagtcagcag gggtattccg ttggctgtta ggaactggcc ttgccgggga
      901 agtggctggg gagcccccag gcttatctga gcatcccaga tccttgcatc cgatgtcctc
      961 taaccctctg gtgactctgg ggtcttggaa gcaccagtgg tccttttttg tgtcagcttc
     1021 cgcagaagct tcttgactgt gtcgtcagcg cactcagcct gcaggtgtcc ccccaccccc
     1081 ttagctctgt cactgcagaa gggcacagag tgatgtccag gggccatgac ctgccttgtt
     1141 ttggggggcc agagtgggat taaggagcca gctgtcctcc tactgtccta gttctccagg
     1201 ctctggcaac cgggaaagtc cttgcttcca tgggcagagt tccccgaaga gggcctaaca
     1261 ccaagcctga cacatagtca gccccaggca tgttttcttg gaataacaaa tgtgtaggac
     1321 tcacctgcct tctcagtgct caccctaggc cctgaggact ctggagattt tagagggagg
     1381 gcattggagg gtgggccgct cctgtcactc cacattcagt ggcactggga gaagcttctc
     1441 agcatcctcc tttgtgtttt aaggctgtta ctgtttctct gcttcggggg caagaacact
     1501 gaccttccag gcctgaacca gatcctaacc tgagaataac ggctgcccgc cagtcccaga
     1561 ggccttcaga gagctgaacc ttcatgtgtt gttccaacac cttccctccg taaatgaaac
     1621 actcacagga ctgcccttta tcccacggtt ctggtcatca tcccctccct actcttgagc
     1681 tctctgtgtg cataggaggt actcacatca tcaaacattt tgtgggacct tacttttgtt
     1741 aaggcttaat attatgaaaa taatgtacaa tgcatcccca atatcgcccc caaatatgac
     1801 attaaatatt atgttttaga ctgccccaag ccctcgccca cccaaggctc gtcagatgag
     1861 agccttgtcc cccctccagc tcctgacaag gccggcgctt tgctgaaagt ccagacctgt
     1921 gccctggtgt gcatgatggc tctgaggtct ttcctgtccc tctcaggctg tgggcaaggt
     1981 catgggcgtg ggcatgcccc ctgtgtgggg gagaaggcag tatggaagtt aaagtgcaag
     2041 tcagagttgt ttggggaacc cccatcctac ttgtgtttgt gacaactgct ctctagttct
     2101 gactcagctg agtgaagcaa tagctggtac cggggcagga aagaaatgcc atttttgaga
     2161 cacgtggcac tcatgtggtc atacagaggt tagtacagcc ccgtgaatca tcagttgccc
     2221 aggttctcca taccctagat atgtctggtc ctgctcagca cttccctctt tgatcaagaa
     2281 ccccaggggc agcagtaaca tctaagggtc ctagcctgtg cctggagggc atctggccaa
     2341 gacccctcat ttccccagcc gaatctggcc ggtggcacag atggcagggt ccgccgtgta
     2401 gggatggggt agagctcctt tcagtccgac tcatgtggcc cggccacact cccatctctc
     2461 tggaaattat ttccatccgt tgacggccag gatttcaaga acagccagcc aagagttgcg
     2521 ttgggttact ccccgagtcc caagaagact ttgcctcctg catttcaggc aaccctagaa
     2581 gcccctcatt caggggcttt ggctagtgga atgaccatgt ttactgagcc ccagcccact
     2641 gtcagaatag taggtgcccg tcccattgcc agcctgggtt ttgcctgagg ctgagccatg
     2701 agccctctgg ggcagtagct tagacttaac gttcagtggc ctagggtaag gcagacgttt
     2761 cggccttttc cattttccca ggaggtggcg ggagccagct tgggcaggac agtttggagc
     2821 ctggattttt ggcctgagag gcagactgac tcagtctgcc cagaagaaag cgtcaactta
     2881 tgaatagagc atactggcca cgatatctgc caccctaggc ctgaccttcc ccctaaacaa
     2941 acgtgccccg tcactacact gcccttggcg tattccacac gggagtctct gttggtgctg
     3001 gggctcactt ctgtttgtta aggagctgac ttggccctca ctcatcttct ttcaccctgt
     3061 agtcagggga gtcctgtgtt ctcagggcca gcgtctggca ggccacttac tgcctgctgc
     3121 ctggttccag ctccccgccc gtggcggcat tccgtgtctg catctgcatc tcacctctgc
     3181 caggacctac cctccagcac aggctgtccc tagcccttgt ctctcggatt ttcacttggc
     3241 acgtggtgca gcattgtgtc cttggagtgt ttgttttcac tgctggggcc ttgtttcact
     3301 tcagctcagc aacctgggca gaagtgccat ggtcctttgg gttgggaatt tgatgggaaa
     3361 aactcctcag tggttctggg gtagttgttt ctggagactg acgagatgcg gtctttaagg
     3421 ctgttagacg gaccacatca tggtcgttat tgttgatcga agctattaac ggcacggttc
     3481 tttcaggaac ccttttcccc atggataaca tcagacgtct aatctacaag taccgtttct
     3541 gacaaccgcc ccccccccga ctcagcacgt tttcagactt tttctaatta tatatactta
     3601 tagattctgt gtttttattt cttcttagag ttccctgaga ttagaatttc cttaccaggt
     3661 agttaactgt cccagcaatt tggcttttat ttggtactca agctttttcc tcggcactca
     3721 agctttttcc tcgaaggccc tcctctgtct tcagcctatc acctcaacat actccacctt
     3781 gtcgacttgg tcttgtcagt acgaagcgag gtgtggttgt gcctgattgg tacttggttg
     3841 aaagactgag attgccaggt actacaggtc tcttgaggtg ttactaggcc ttttcttcca
     3901 gtgcctggta tggtaccaac cacaaaagca tcatggtcca tcatcaccat catcatcata
     3961 gtgatactgg taccagctga acattaactc tgtgttgggc attgtgctga acgctcctgt
     4021 atctcatacc atcctcacca ggaaaacccc taggaagtat ggatgaagct gaaaatagga
     4081 acttaggaag gtcaaataag tcgttcaagt ctgtataact agtagaggct gtattaggat
     4141 gcacgttcag acctgtctca ctttagagtc tgagtttttc accactgtct gcattatcct
     4201 tgtttagtcg tatgtcctca cgaagtgttt gttgaatggc aagattgttc ccacagtctg
     4261 gctggcctct gaggtatcac taaccatgat gaggatagca cccaatattt ttgaatactc
     4321 agattgctag gctctgtaat aatgtgatgt aagtgacatg cgtcaggtta atctatgtaa
     4381 tctgcagagc tcaatgagga cgatttcccc cgttctgcag attaggaaac cgaggctcag
     4441 aaaggctgag ttaagttgct caagatcaca cagctaaaga gtgtataagt tgggatttag
     4501 ctgccagtta tctcttgaac agtgcgagcc tgttctcttg atcactatgt tattgtctac
     4561 aaggaaaaaa aagattaatt tctacctctg tccctttctt ctcgctgccc ccttccttag
     4621 cttgggatgc tttttctgtg tctgtttctt ttcatcctac tctttctgag aggcccaggc
     4681 tgcgctcaga ctatgtctgt ccacattgaa cgttgcaaaa ttagttactc gatttatatt
     4741 ttcttaaact ttacttgtag acatatcctc acgttaaagc atcacctgat ttaagattgg
     4801 tgctccatac tgtaagagta gacctatttg tctatcttat ttctgaccaa aggaatggaa
     4861 cagagagcct agttatagac ccgtgtatat ctggacacct gatttatgac aaagggggca
     4921 ctgctgggca gtaggaaatg aacggtcatt ttaataataa acagtgctgg gtcagttgga
     4981 tgtccacaag gaaagaaatg atcttgacca ctacctcacg tcatgcacaa aaataaattc
     5041 cggagagatc atccatctca atgtgaaagt taagacaaaa taaaacttca tttacaaggt
     5101 cacatagagt atcttcataa ccttgaggta gccatacatt tttttaaaga agacaccaag
     5161 agcaccaaaa ataaaggaaa agattgataa gttggatgac attaaagtga ggaacttctc
     5221 atcatcaaag acatcaataa aagagagaaa aggcaggcag agtggaaagg atacacacaa
     5281 tacctacaac cggcaagtgg attcgtatcc agagtacgta aataatccaa cagacacgta
     5341 agaaaaagag cccctctccc ccccaaaaat gggcaaaaga acattccata cttataaact
     5401 gagttgtata cagttttctt ctcccaattc caggttttaa ccaatttgtc ctgggtcatt
     5461 ggcacagcct ggtggctggc cttgggaact gtctgatccc ctggctcatc ttgacatttt
     5521 cttttatgtc tggactgtgg acccttcatt ttgcatgtcc tgtgtcactc agctgttttt
     5581 ctgccacaag tgcctccttt ctcgtgaata cacaatacat aggtctcttc ctcttttcct
     5641 ttggcttgtt aacttttgac catctatttt aagactcttt ctctccggct tcttctccct
     5701 taccatccct cctgcctcca cccccacccc tttttcgttt ccctttttgt acctccttgt
     5761 ttagcctaaa gacttttcgt tgcaatggtt atcctaaaat atctgaaagc ctttggcggg
     5821 ggggtaggct cgtaccgcgg gctccagagg cagagcgaag acttaaggcg ggtggttagc
     5881 taccttgaga gtgatgtcat ctcagttatg ttccattgtc tgagacctcc aaaggtgggc
     5941 cggggtgggg gtggggggtg gttactgaac gaagtagagg ctgggcagtg ccttggtctt
     6001 agtgttgttt acggagggcc ctgtgccttg gatgggcagc tggattatga taatcctttc
     6061 caatcttatc aacaaagccc caaatggagc ctttgaggat gcccagagca gcaactctca
     6121 tctgggagag agggcctgtg tattggaatg attcttttgt ccttctggtg ggtcaggatg
     6181 gggcacaaat actagcactc taatggtttc attcatagtt aaaaataatt ccgaggtacc
     6241 cctccacctg cagccctcaa catggggctg gttgacaacc actgacctga agggcaggat
     6301 ttcccttatt tccttctgtg ccattctttt cctccattag cagcatctgt gaggtgaatc
     6361 ctttcggtta tcttcttctt tgtttcttta ttttatttaa atccccactc gggcagtgct
     6421 tgttcctata gcatattttg gacacattac cacagagaaa acacaatgga aactctgcag
     6481 gtatgtttgg acttcaaaaa ttgggggaca gtgtttaaaa ttcaagagtt taatgtagta
     6541 aatgtagatt tttgccttct cctgaaaaat tggacgatct gggtctctac tcccagatgg
     6601 ccccaagcag gcagagcagg ggaggggctt gtccctgctc ctgacacact ccctccccgt
     6661 ggcttgcatc ctttgctacc tgccgagtcc cccaaggcat tggggtttgt ctcttcctga
     6721 agtgggtgaa ataggctctt gtgggctagc ctgggaaccc aaccagtacg tttaatatcg
     6781 tttcagtgag aaaatgagtt ccggctttta aagagcagac tttggaaaca tcagagatgc
     6841 taatttggga atgcttgtag ggtcctctca cagaacctgt acgtcttgag gtgatggcct
     6901 gtgtcttata cttcttctgc gcggaatgtg gccttagcat ctagtaggta cttaatcagt
     6961 gatttacctc ctggggttac cgagtgccct ttgtctgctc ctcccttcca ggcggtaaac
     7021 agaaacacct tctccctgtg gacctgaacc tgtcagtgct gcccgagacc agaccgctgc
     7081 ctgatttatc tagaacaccc actcgagccc ttgatactcg tgtggagttt gagatcagtc
     7141 ccctgtacag agctccctgt cttgagagaa atgacttctt tcctgatgaa agatccagcc
     7201 cgtgttcagg aggccctaat gaggaaatgg gaggacagag aggctgcact aagcctgcgc
     7261 tgttggctga tgcccgccga actggagttc gtggcaattc cagagtgctt gcattccaaa
     7321 cccagggcga gggctgggta aaagtccagc tcatcccctt taaagaaaaa aattcttcct
     7381 ctctgacatt tcgaggtttt gacccagatc agtcagaggc cacggagagc tcgcaatgtc
     7441 tggagagtgt gtttagttcc cgaggcctgg agctgcagag aagccggagc gagccagtga
     7501 cctgctgggc ttgagttgaa gccctgcctt ttcaagtgtg ccctggccca gcctccccag
     7561 acctcacagg gtggacggaa ggagccagca ccttcccctc actccaaagt tatctttacc
     7621 ccctgaaatc aaacatcgca tgcagcaccc tgtaaaactg cttccttgta ggcttgagcg
     7681 tgcttgctga gtaaacatcc tcccatgttt ttggaactga atccatttct gcttcctggt
     7741 catcccatgc gggttctttc tgttctgggt gccatgcaga atcaggttaa tagaaggcag
     7801 acctagcgtt gggcaggggc acctaaaatg acagtttcaa ccttagtaaa ttgtaaggag
     7861 agtaacagcg tcgtgggaag aaagagaaaa gacttagacg aaaaatgaaa tgaaacagag
     7921 cctcccaaac atagtgctgc catcatgctt tgcaagtcag agttggttcc tgccgagccc
     7981 tgagacgggg accttccttt gcatgggctc aagctcagtt gtgcggtggc tgaaccacag
     8041 tcagcctccg tctgtaggtt gtgtggctgc gtctggccct cctgacccta acttgctctt
     8101 gccccgtctc tcgtgactta tttgcctctt ctctctcact tccacccacc cgtgacatct
     8161 ccatcgccat ggcattgagc agccacgtca tccaccatgt tcacggggtg atgggccaac
     8221 tctgtgctga gccctacttc cttctcgttc tccctcctga agcaggaggc tccctggcag
     8281 agctcaaagc cctttgttta tttgatcctg ggcgtcttgg ataaatcagg aatgtcctga
     8341 catgaactta ggcatgtttt tcttccatgg aaaaggaaac tacggcaaat ggtatttaag
     8401 taggcagagg accattccgg gggacttgcg ttggtgccat caaggccaca ttcctttggt
     8461 catcagacca gtaggtgact tctttattgg catgctctac cctggagccc agaaggtgtg
     8521 aatttgaagc actttctccc ctgctgagag cttggcacag atgctctgga cttcttttaa
     8581 agccatggag taccatggtt gtcttccagg tggtcttctt tctgctgggt gaaaccttgg
     8641 cccagagtag ttgcttgaag aaggctgctt gggagttggg gtacaggata aggttgctgc
     8701 ctggcctctc attctccagc cgtcttgaag ttgcaatgat ctcgatgtgt gatctacttt
     8761 gagtcagctg ccccaggacc tgaacacttc cgatcagggc taggctcttg tggtacaacc
     8821 ggtcgccaga aacctttgcg ggtctgcttt ctttggatgt ggcgttgtgg gaacccaaga
     8881 attcctgagt ctgtctaggt atatggagtc cagtgagttt agcatctgag ttgttctgga
     8941 actatttctg ggtctggggg caggaaaatg ttgggagcta tgtgctttgc tgcagtggag
     9001 acctgtcagt aaccaaaaaa caagcccagt cagtctccag agcattggtg ggaacccccc
     9061 ccccccccag ctccctgtga gagtttccag gtgtgaatgc ccatgtatta ccatggcagg
     9121 ggcagtgcgg ggtgggctgg cgggtgctca tctcatttgg ccacctgccc tggagagaag
     9181 aagccagtcg ttggccactg caggtccagg cttggctgcc gctctgtttt gctgcttttc
     9241 atgttgtcag aggatcttct tgggaacaaa tgactcagca acctgaatct ctgggactga
     9301 gtagcctaag tgccttttga gaagtgattg gacctatctg cacaggccct aaaattctga
     9361 gccccggaag agtggagatc cggactggtt ttactataga ttcttcaggc cgccgctcaa
     9421 tttggtttct ccaattcctg ccccagtaga aggagctcac tcatggggta agcaggcaat
     9481 gttttaatta tgctttttgt ccttagaaaa ttccaggaag aaaaaagatc ctggtctgtg
     9541 gccaaaaaag cagaaaacaa cgaaaatcag cgacggctgt aattctggac ttgtctgtgg
     9601 cagaaagagt taataggacg gtggtctcag ggtgggggcc gttatattct cgggtccagg
     9661 agaagctcac gtggttcaag aaaagatgac gccacattta gtgtgggaca gccctgtctg
     9721 ggttctgggc gctgtcactc aaagagttaa gctagtctta tggctgggga gccctcaggg
     9781 aaggcctgag cctgcaggga ccaggccctc tacgccccag agcagtgagg tctggggtaa
     9841 aagaggggct gagaagtgtg gccaggaaag ccgagtgtag gcccaacttt tttttttgcc
     9901 ttgtttgacc agccttggca ctgccctctg gctctccagg ggaaaagctg cagttctgct
     9961 cttgcaacac aaggagcaga ctggagaatt tagatctgcg tcacagagct cagagagaga
    10021 gagaggagag aggggagaga gagagggaga gagagagaga gcgcgagcgc tccgtcgata
    10081 ggtctgctag caacagccgt gctgcagcag agagagagag agaaatcaag aaacaagtca
    10141 tagcaacacc gggcaccagg ttctgccagc tcacttgcca agcgttcaga aatctgtcag
    10201 gggccggagg cctctgggta gcctaggcta aggagatgac acgcaaggcg acgatgggtg
    10261 gtccgatggg cttcaggact tgatggcgta acccccgtct tcccccacga gatttgcatt
    10321 gacgtcccag gctgtccaga gctgagccca ttatgggaag gacctgcctt ctggaagctg
    10381 ctgctccccg gtgcttggaa aggtaccaca tccgtctggt tcacggcggt tatttcattt
    10441 attcctcacc tcaaccctgc gaggagagtc ccatggccgg ttcacccaag acaatgggga
    10501 ttttttgtag ctgaaattga tggactaaca aacttcagtt ttcctggtct ccttcctctc
    10561 gaaacaggag gcagaggagc ttttgcatca ggaaaacacc atggaaacgc catgagcatt
    10621 ggtggtggcg gagtgagggt taaacagtga gccttcctgg gatccttttg atgccagtgt
    10681 gtcgggagcc tggagatgga gcgctcagcc gagtggccag gacgttctgt caacatgaaa
    10741 gcagcaaaaa cagtttgtcg gggctcagcg ctgaccccgg gctggtgtca ttttcaggaa
    10801 gggcttggca caagaaagac caccgccagg cacgggattg ggggtgacgt cggataactc
    10861 agtaggcccc tatagaccct tgaattttag aatctgaaaa gaaaatcagc tgtttgtctt
    10921 ttattagatg agcttggcaa acaggatcac ttcttgaact cctctcactg gtccccaaca
    10981 agagacatct tcccaggttc agaaaaccct ttgggatttc tcggttgtgg cttattgcct
    11041 tggatggagg gcaggtccct tctagggggc aggggtgggc ctggcagtcc tagtgcccgt
    11101 tatggggata tggagtcgta ggtttcctct gctggcatca cgtgaagacg gtggatccac
    11161 atcacaggcc ttgagctgaa gaccagctct tgggcagccc acttcagcct ctcctttcct
    11221 tattatctca aatcaaagtc ttatcttctc cccttcatct tcctcatttc tttcttaggc
    11281 gcagtagtgg gcctgaagtc cttgaccttt gcgtctgtgt gtgtgtcatc atggcggctc
    11341 agggttctag acttttcttg aatctgcagc attgcgcttt gtgcgcgtga cgcccccccc
    11401 cccccccgct ccgccccgcc cacccggccc cgccccacca ggccttcttc ggagcaagag
    11461 agaacatggg cctccatcgc cactgaacct cagccaagcc gtcatcccca gcatctggcc
    11521 tcccttctct cctcccccgc tttcggccag tgtctggggt ggaggagcaa acaacttgtg
    11581 ggaggagatg gagggacagc ctggcctgga gctctctgcc tcctttcctc gtgtgccatt
    11641 tttcagcctc acgcttcctg tggatggatg atgccagcac tgacatttgt cgccgagcgc
    11701 ctcctctccc caaggacttc cccgcgtgac tcttttgggg tctggaaaga gtggctctgg
    11761 ggccttggga gccagagggg acagggggac ctggcccagg tcacagcaga ctgtgagacg
    11821 ggcgaggggt gggagctggc cgaacccacc caagcgcaaa ggcagccccg gcccctttgc
    11881 gtcatgtctt tttcagcctg aggagagagc aacttgacct aaaaaaattg tatatatgtg
    11941 ggtgttggat cctttgtgtc tctttgtcca gaagctgtgc atgtgatgag agcccaggtc
    12001 tctgtactgt acagagaact gttgtccttc aggtttgttt tcagaaagat gtgatggatg
    12061 ggccgtcctt gatgagaccg cgtgcccgct gggactggcc ttcctccagg atgctgggcc
    12121 cggcgtggtg tttcttctgt cagtggacga gaactcagag gagttcagct ccatgagtag
    12181 gtgacaaact cctggagact cagctgacga tggtgccggt gtgcagaaga cagttgtcat
    12241 cctgtgggat aagcgtgtgc ccgtttgcat ttatttggaa caaaaaaagg agctgcctgg
    12301 cagcctggct ctctgcaagg tgctgttgag cccctggttt gtgtggttct gtgaccacaa
    12361 gtgctgatgg atgtggcgcc atcccagtct tgtcggtgaa ccatcaccag cctgcttatt
    12421 ggaaaccagg cgcagcaagg aagctaggat tcaacgccct ccttccctgc ctcccagccc
    12481 gcctccaaaa gaatttaatc tgctggacaa caaacaatac tgttataaaa ctttgaaaac
    12541 aagagggcgc ggcctccctg acaaggagaa gggcatgccg ggtaatgggc gagggagcct
    12601 gccaggcccg agatggagcc aggcaagagc ccagttggct gggcacctgg gtgcccgccc
    12661 ctgcccagcc caccagccgt gccatcccca gtccagagga gaaggaaccg aaacaaaagt
    12721 gggggcagcg gagctcttga aaaggggaag ttgtcctgag actggcagac agaggtcctg
    12781 ataacagaat gaggctggca tagccgtgaa ggtacagcca ccagcctggc cagctgcagg
    12841 ggaagcagga gagaaaggtg ctccaagctg gctttggact ccagacctac cctctgtctg
    12901 cccagcctcc caccccccac ctagggaagt ggaaccaggt catgggcatg acccggtcca
    12961 tgtgctctgc caggagccct gaaaccagca ttcccagcgg caggaagatg gatgatctgg
    13021 gctccacttc cggcgctcct cccccactct ggctggaact tgcgtcagtc atatcaagga
    13081 ggccctcggg ttgggtgcca gggagagcaa gctgcttcca gccgcatgaa atcacctggc
    13141 tacttgcaac taggggacaa aatcagcatc tggtttcaga gaaccgagag tattttagaa
    13201 ctcgagagtt ggagcccaaa ctcagccgtg cagtggagac cacagaggca ccagggtgct
    13261 ggagaacaaa gcaagtatcg aagcaccggc tccttgcaga accaggcgtg ctctcatctc
    13321 cacccaagtt taatgtgttg tacagtcagt aatacccacc cccatctatg cagaaatatt
    13381 gcctaggact accctcaccc tcaatcttcc tcataattaa gttcaagaac agaatgagac
    13441 ggtagtccag ctacagaaca ggaggcagtg ggcagaagag taggagcaca gactttggag
    13501 tcagacctgg aatcgacacc attcactagt catgggactg tggacaagtt tttgaaccac
    13561 actgaggatc agtttcttct cctgccaaaa agggaatact acctactccg caagactgtt
    13621 gtgagaattc aagagcacag cttggtgttc aaattttatt tccttctctt ccctagagca
    13681 gcacatgatg ttatgtccag gaggcgtaaa aagtagaagg gtttatctag agtcctgaag
    13741 aattggtagg gaaccggaga gatgcagatt cttctttctc ctggttatgg tatcagagga
    13801 aatacagaca tattttctta gcttcaaaca accaaaaaag atggtgcaag taggagatga
    13861 gaaatctaat ttgaacacca tttgcaaacc taattttcag gcagaatttg aaaacaacac
    13921 aaaacaaaac tccattcttt tattagagga ttatctactt agtacaatta taagacacta
    13981 atctttttgt gtcacagtag agaataaata agattggcaa ttaacggggt catatttgaa
    14041 tgtcctgact gctcacgtat ggctgggaag gcggagcccg tgatctacgt gactaggaca
    14101 catggaagtg ttgccctggc tcaggtgaaa cccacctttg tgtagtgtct agagcctcac
    14161 aggcagaaag ggtgcttgtt tcctgatgac gtgagaaaat atgggaaaat gctttgcaca
    14221 ctgtgaaata gtttacaaag cagggcaata ctaatgtaca tattaaccca gtttagtaac
    14281 agctttggct attttatttc gtcatatata taataatctg tagggactgg ttatggaatt
    14341 aagtaactta gaattcatga gttttgtatt gcgattgtct gtgtaaatta ccagctttga
    14401 ctttcgtgtt ctttgagcat cactttgtaa ctcttctctg tgcctttcta atggatccat
    14461 atatcatgtc ccgtcacaag tggaactgca agaagacacc tctgctcggg gcagaggctg
    14521 ggtcttccga tcgcatctcc cttctttctt cagtgagatc ctcttcttct ggaagctggt
    14581 ttcacatggt ggcttagatt tttccatctt tgtatctagc accatttgaa atcagtgttt
    14641 taggagtaag aattgcagca cagcaaaagg ccaaccgcag aggagctgct gctcgtggga
    14701 tcagcttccc tccttctgcc acctgagccg gttcaagaaa aggaagaact tgagaatcaa
    14761 agtacactct tgagtgtgtt gggttgtgga aggggacagt gcagggatgg ggtcgtgttc
    14821 aatagaaact cagaggcttg agcagagcca gaggttgtga ttgtctttct gttgacaggg
    14881 agcggcaacc cctagcagta gcctgttggt aaggcctttg agcacacgct tgggcaatgc
    14941 cgggttgggt acttgattgc aataggcaag gggaggggtg tggaccagaa ggactatctc
    15001 atcacatcag cactgtccac ctgctcctag atgccgtgaa acattcagct gcagttgccg
    15061 agcagctgaa atcagacttg ccacctgcac tgtcaaggtg ccggacccca ccgagcacca
    15121 ctggacccat ctcttacaca ggctgaccga tttctcctgg tgttcagagt ctgtttttgt
    15181 ctagcaccat ttgaaatcgg ttatgatgta gggggaaaag cagcagcctc gaggcctcat
    15241 gccaagtctg gtcagcaaca gcctggggct tcctggaaga tggatgcgca gagagagggg
    15301 gaggaaggtt atgctttttc ctgctagctt ctttaactac atctacaata ctttatgcac
    15361 gggtaataga tcagttaatg gatttttcag aagcaaatca ctaaaattta tctgatgtcc
    15421 tcggtttgcc gaaatgtggt agtgatgtaa actataaatt ggttgctgtt gaattatctt
    15481 tcagtcatgc atcctgacct taataaatgc tttactgtac acaatt
//
LOCUS       XR_004351865           14792 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X46, misc_RNA.
ACCESSION   XR_004351865
VERSION     XR_004351865.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14792
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..14792
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..14792
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X46"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gggagggagg gagagctcct gggggaagaa ggttctgctg gaggtcagtc tgctgtcgct
       61 tctcctcagg ccacttttgg agggttgttc agatcccaat gagaaggaaa atgtcaaagt
      121 agaatgagtg cagaggaggg ctgctggcat atgaggaatg gttaaagcac gggcagatat
      181 accccagaga ggggaaggtt tcagcagaac gagtttgctg ggcagagttt tgtgtattga
      241 aaggactgtg atgtgatgtg ggtgtcgggc ttattactct gcggcagtga cagggcggcc
      301 gctgttggtg cagggagctg ggtcattgtc cctccctttg agctgcgaag gactcgaggg
      361 aggaaagatg ggtggccctc tgagatagtg agccccttca gcggtgctct tggtgttcac
      421 aggtaagctg aatggccatg acgcagggaa tgctaataat aaaaagtcat aatagttgcc
      481 acttcctgaa tgcttgttgt gtagcaggca gtgtgaccca gggctttact tgtatggact
      541 cacttaatct cctacaacac tgggcagggg tatgagtagc tccttagccc tactttatag
      601 acgagaaaac ttagcctgag aaatgaagta acccacccaa ggttccatac attggcctcc
      661 agcccaaggc cagtctcctt gtattggtga aaggtgaggc cggatgacct gtagggtgtc
      721 ttacaacacc aggtttctaa gtctctatct ggtgggtcat cccagccatt tgaatggggt
      781 tgggcagctc tcttgggtcc agggcaggag tggcggttac tgctctcctg gtgacctcac
      841 tgggactggg aagtcagcag gggtattccg ttggctgtta ggaactggcc ttgccgggga
      901 agtggctggg gagcccccag gcttatctga gcatcccaga tccttgcatc cgatgtcctc
      961 taaccctctg gtgactctgg ggtcttggaa gcaccagtgg tccttttttg tgtcagcttc
     1021 cgcagaagct tcttgactgt gtcgtcagcg cactcagcct gcaggtgtcc ccccaccccc
     1081 ttagctctgt cactgcagaa gggcacagag tgatgtccag gggccatgac ctgccttgtt
     1141 ttggggggcc agagtgggat taaggagcca gctgtcctcc tactgtccta gttctccagg
     1201 ctctggcaac cgggaaagtc cttgcttcca tgggcagagt tccccgaaga gggcctaaca
     1261 ccaagcctga cacatagtca gccccaggca tgttttcttg gaataacaaa tgtgtaggac
     1321 tcacctgcct tctcagtgct caccctaggc cctgaggact ctggagattt tagagggagg
     1381 gcattggagg gtgggccgct cctgtcactc cacattcagt ggcactggga gaagcttctc
     1441 agcatcctcc tttgtgtttt aaggctgtta ctgtttctct gcttcggggg caagaacact
     1501 gaccttccag gcctgaacca gatcctaacc tgagaataac ggctgcccgc cagtcccaga
     1561 ggccttcaga gagctgaacc ttcatgtgtt gttccaacac cttccctccg taaatgaaac
     1621 actcacagga ctgcccttta tcccacggtt ctggtcatca tcccctccct actcttgagc
     1681 tctctgtgtg cataggaggt actcacatca tcaaacattt tgtgggacct tacttttgtt
     1741 aaggcttaat attatgaaaa taatgtacaa tgcatcccca atatcgcccc caaatatgac
     1801 attaaatatt atgttttaga ctgccccaag ccctcgccca cccaaggctc gtcagatgag
     1861 agccttgtcc cccctccagc tcctgacaag gccggcgctt tgctgaaagt ccagacctgt
     1921 gccctggtgt gcatgatggc tctgaggtct ttcctgtccc tctcaggctg tgggcaaggt
     1981 catgggcgtg ggcatgcccc ctgtgtgggg gagaaggcag tatggaagtt aaagtgcaag
     2041 tcagagttgt ttggggaacc cccatcctac ttgtgtttgt gacaactgct ctctagttct
     2101 gactcagctg agtgaagcaa tagctggtac cggggcagga aagaaatgcc atttttgaga
     2161 cacgtggcac tcatgtggtc atacagaggt tagtacagcc ccgtgaatca tcagttgccc
     2221 aggttctcca taccctagat atgtctggtc ctgctcagca cttccctctt tgatcaagaa
     2281 ccccaggggc agcagtaaca tctaagggtc ctagcctgtg cctggagggc atctggccaa
     2341 gacccctcat ttccccagcc gaatctggcc ggtggcacag atggcagggt ccgccgtgta
     2401 gggatggggt agagctcctt tcagtccgac tcatgtggcc cggccacact cccatctctc
     2461 tggaaattat ttccatccgt tgacggccag gatttcaaga acagccagcc aagagttgcg
     2521 ttgggttact ccccgagtcc caagaagact ttgcctcctg catttcaggc aaccctagaa
     2581 gcccctcatt caggggcttt ggctagtgga atgaccatgt ttactgagcc ccagcccact
     2641 gtcagaatag taggtgcccg tcccattgcc agcctgggtt ttgcctgagg ctgagccatg
     2701 agccctctgg ggcagtagct tagacttaac gttcagtggc ctagggtaag gcagacgttt
     2761 cggccttttc cattttccca ggaggtggcg ggagccagct tgggcaggac agtttggagc
     2821 ctggattttt ggcctgagag gcagactgac tcagtctgcc cagaagaaag cgtcaactta
     2881 tgaatagagc atactggcca cgatatctgc caccctaggc ctgaccttcc ccctaaacaa
     2941 acgtgccccg tcactacact gcccttggcg tattccacac gggagtctct gttggtgctg
     3001 gggctcactt ctgtttgtta aggagctgac ttggccctca ctcatcttct ttcaccctgt
     3061 agtcagggga gtcctgtgtt ctcagggcca gcgtctggca ggccacttac tgcctgctgc
     3121 ctggttccag ctccccgccc gtggcggcat tccgtgtctg catctgcatc tcacctctgc
     3181 caggacctac cctccagcac aggctgtccc tagcccttgt ctctcggatt ttcacttggc
     3241 acgtggtgca gcattgtgtc cttggagtgt ttgttttcac tgctggggcc ttgtttcact
     3301 tcagctcagc aacctgggca gaagtgccat ggtcctttgg gttgggaatt tgatgggaaa
     3361 aactcctcag tggttctggg gtagttgttt ctggagactg acgagatgcg gtctttaagg
     3421 ctgttagacg gaccacatca tggtcgttat tgttgatcga agctattaac ggcacggttc
     3481 tttcaggaac ccttttcccc atggataaca tcagacgtct aatctacaag taccgtttct
     3541 gacaaccgcc ccccccccga ctcagcacgt tttcagactt tttctaatta tatatactta
     3601 tagattctgt gtttttattt cttcttagag ttccctgaga ttagaatttc cttaccaggt
     3661 agttaactgt cccagcaatt tggcttttat ttggtactca agctttttcc tcggcactca
     3721 agctttttcc tcgaaggccc tcctctgtct tcagcctatc acctcaacat actccacctt
     3781 gtcgacttgg tcttgtcagt acgaagcgag gtgtggttgt gcctgattgg tacttggttg
     3841 aaagactgag attgccaggt actacaggtc tcttgaggtg ttactaggcc ttttcttcca
     3901 gtgcctggta tggtaccaac cacaaaagca tcatggtcca tcatcaccat catcatcata
     3961 gtgatactgg taccagctga acattaactc tgtgttgggc attgtgctga acgctcctgt
     4021 atctcatacc atcctcacca ggaaaacccc taggaagtat ggatgaagct gaaaatagga
     4081 acttaggaag gtcaaataag tcgttcaagt ctgtataact agtagaggct gtattaggat
     4141 gcacgttcag acctgtctca ctttagagtc tgagtttttc accactgtct gcattatcct
     4201 tgtttagtcg tatgtcctca cgaagtgttt gttgaatggc aagattgttc ccacagtctg
     4261 gctggcctct gaggtatcac taaccatgat gaggatagca cccaatattt ttgaatactc
     4321 agattgctag gctctgtaat aatgtgatgt aagtgacatg cgtcaggtta atctatgtaa
     4381 tctgcagagc tcaatgagga cgatttcccc cgttctgcag attaggaaac cgaggctcag
     4441 aaaggctgag ttaagttgct caagatcaca cagctaaaga gtgtataagt tgggatttag
     4501 ctgccagtta tctcttgaac agtgcgagcc tgttctcttg atcactatgt tattgtctac
     4561 aaggaaaaaa aagattaatt tctacctctg tccctttctt ctcgctgccc ccttccttag
     4621 cttgggatgc tttttctgtg tctgtttctt ttcatcctac tctttctgag aggcccaggc
     4681 tgcgctcaga ctatgtctgt ccacattgaa cgttgcaaaa ttagttactc gatttatatt
     4741 ttcttaaact ttacttgtag acatatcctc acgttaaagc atcacctgat ttaagattgg
     4801 tgctccatac tgtaagagta gacctatttg tctatcttat ttctgaccaa aggaatggaa
     4861 cagagagcct agttatagac ccgtgtatat ctggacacct gatttatgac aaagggggca
     4921 ctgctgggca gtaggaaatg aacggtcatt ttaataataa acagtgctgg gtcagttgga
     4981 tgtccacaag gaaagaaatg atcttgacca ctacctcacg tcatgcacaa aaataaattc
     5041 cggagagatc atccatctca atgtgaaagt taagacaaaa taaaacttca tttacaaggt
     5101 cacatagagt atcttcataa ccttgaggta gccatacatt tttttaaaga agacaccaag
     5161 agcaccaaaa ataaaggaaa agattgataa gttggatgac attaaagtga ggaacttctc
     5221 atcatcaaag acatcaataa aagagagaaa aggcaggcag agtggaaagg atacacacaa
     5281 tacctacaac cggcaagtgg attcgtatcc agagtacgta aataatccaa cagacacgta
     5341 agaaaaagag cccctctccc ccccaaaaat gggcaaaaga acattccata cttataaact
     5401 gagttgtata cagttttctt ctcccaattc caggttttaa ccaatttgtc ctgggtcatt
     5461 ggcacagcct ggtggctggc cttgggaact gtctgatccc ctggctcatc ttgacatttt
     5521 cttttatgtc tggactgtgg acccttcatt ttgcatgtcc tgtgtcactc agctgttttt
     5581 ctgccacaag tgcctccttt ctcgtgaata cacaatacat aggtctcttc ctcttttcct
     5641 ttggcttgtt aacttttgac catctatttt aagactcttt ctctccggct tcttctccct
     5701 taccatccct cctgcctcca cccccacccc tttttcgttt ccctttttgt acctccttgt
     5761 ttagcctaaa gacttttcgt tgcaatggtt atcctaaaat atctgaaagc ctttggcggg
     5821 ggggtaggct cgtaccgcgg gctccagagg cagagcgaag acttaaggcg ggtggttagc
     5881 taccttgaga gtgatgtcat ctcagttatg ttccattgtc tgagacctcc aaaggtgggc
     5941 cggggtgggg gtggggggtg gttactgaac gaagtagagg ctgggcagtg ccttggtctt
     6001 agtgttgttt acggagggcc ctgtgccttg gatgggcagc tggattatga taatcctttc
     6061 caatcttatc aacaaagccc caaatggagc ctttgaggat gcccagagca gcaactctca
     6121 tctgggagag agggcctgtg tattggaatg attcttttgt ccttctggtg ggtcaggatg
     6181 gggcacaaat actagcactc taatggtttc attcatagtt aaaaataatt ccgaggtacc
     6241 cctccacctg cagccctcaa catggggctg gttgacaacc actgacctga agggcaggat
     6301 ttcccttatt tccttctgtg ccattctttt cctccattag cagcatctgt gaggtgaatc
     6361 ctttcggtta tcttcttctt tgtttcttta ttttatttaa atccccactc gggcagtgct
     6421 tgttcctata gcatattttg gacacattac cacagagaaa acacaatgga aactctgcag
     6481 gtatgtttgg acttcaaaaa ttgggggaca gtgtttaaaa ttcaagagtt taatgtagta
     6541 aatgtagatt tttgccttct cctgaaaaat tggacgatct gggtctctac tcccagatgg
     6601 ccccaagcag gcagagcagg ggaggggctt gtccctgctc ctgacacact ccctccccgt
     6661 ggcttgcatc ctttgctacc tgccgagtcc cccaaggcat tggggtttgt ctcttcctga
     6721 agtgggtgaa ataggctctt gtgggctagc ctgggaaccc aaccagtacg tttaatatcg
     6781 tttcagtgag aaaatgagtt ccggctttta aagagcagac tttggaaaca tcagagatgc
     6841 taatttggga atgcttgtag ggtcctctca cagaacctgt acgtcttgag gtgatggcct
     6901 gtgtcttata cttcttctgc gcggaatgtg gccttagcat ctagtaggta cttaatcagt
     6961 gatttacctc ctggggttac cgagtgccct ttgtctgctc ctcccttcca ggcggtaaac
     7021 agaaacacct tctccctgtg gacctgaacc tgtcagtgct gcccgagacc agaccgctgc
     7081 ctgatttatc tagaacaccc actcgagccc ttgatactcg tgtggagttt gagatcagtc
     7141 ccctgtacag agctccctgt cttgagagaa atgacttctt tcctgatgaa agatccagcc
     7201 cgtgttcagg aggccctaat gaggaaatgg gaggacagag aggctgcact aagcctgcgc
     7261 tgttggctga tgcccgccga actggagttc gtggcaattc cagagtgctt gcattccaaa
     7321 cccagggcga gggctgggta aaagtccagc tcatcccctt taaagaaaaa aattcttcct
     7381 ctctgacatt tcgaggtttt gacccagatc agtcagaggc cacggagagc tcgcaatgtc
     7441 tggagagtgt gtttagttcc cgaggcctgg agctgcagag aagccggagc gagccagtga
     7501 cctgctgggc ttgagttgaa gccctgcctt ttcaagtgtg ccctggccca gcctccccag
     7561 acctcacagg gtggacggaa ggagccagca ccttcccctc actccaaagt tatctttacc
     7621 ccctgaaatc aaacatcgca tgcagcaccc tgtaaaactg cttccttgta ggcttgagcg
     7681 tgcttgctga gtaaacatcc tcccatgttt ttggaactga atccatttct gcttcctggt
     7741 catcccatgc gggttctttc tgttctgggt gccatgcaga atcaggttaa tagaaggcag
     7801 acctagcgtt gggcaggggc acctaaaatg acagtttcaa ccttagtaaa ttgtaaggag
     7861 agtaacagcg tcgtgggaag aaagagaaaa gacttagacg aaaaatgaaa tgaaacagag
     7921 cctcccaaac atagtgctgc catcatgctt tgcaagtcag agttggttcc tgccgagccc
     7981 tgagacgggg accttccttt gcatgggctc aagctcagtt gtgcggtggc tgaaccacag
     8041 tcagcctccg tctgtaggtt gtgtggctgc gtctggccct cctgacccta acttgctctt
     8101 gccccgtctc tcgtgactta tttgcctctt ctctctcact tccacccacc cgtgacatct
     8161 ccatcgccat ggcattgagc agccacgtca tccaccatgt tcacggggtg atgggccaac
     8221 tctgtgctga gccctacttc cttctcgttc tccctcctga agcaggaggc tccctggcag
     8281 agctcaaagc cctttgttta tttgatcctg ggcgtcttgg ataaatcagg aatgtcctga
     8341 catgaactta ggcatgtttt tcttccatgg aaaaggaaac tacggcaaat ggtatttaag
     8401 taggcagagg accattccgg gggacttgcg ttggtgccat caaggccaca ttcctttggt
     8461 catcagacca gtaggtgact tctttattgg catgctctac cctggagccc agaaggtgtg
     8521 aatttgaagc actttctccc ctgctgagag cttggcacag atgctctgga cttcttttaa
     8581 agccatggag taccatggtt gtcttccagg tggtcttctt tctgctgggt gaaaccttgg
     8641 cccagagtag ttgcttgaag aaggctgctt gggagttggg gtacaggata aggttgctgc
     8701 ctggcctctc attctccagc cgtcttgaag ttgcaatgat ctcgatgtgt gatctacttt
     8761 gagtcagctg ccccaggacc tgaacacttc cgatcagggc taggctcttg tggtacaacc
     8821 ggtcgccaga aacctttgcg ggtctgcttt ctttggatgt ggcgttgtgg gaacccaaga
     8881 attcctgagt ctgtctaggt atatggagtc cagtgagttt agcatctgag ttgttctgga
     8941 actatttctg ggtctggggg caggaaaatg ttgggagcta tgtgctttgc tgcagtggag
     9001 acctgtcagt aaccaaaaaa caagcccagt cagtctccag agcattggtg ggaacccccc
     9061 ccccccccag ctccctgtga gagtttccag gtgtgaatgc ccatgtatta ccatggcagg
     9121 ggcagtgcgg ggtgggctgg cgggtgctca tctcatttgg ccacctgccc tggagagaag
     9181 aagccagtcg ttggccactg caggtccagg cttggctgcc gctctgtttt gctgcttttc
     9241 atgttgtcag aggatcttct tgggaacaaa tgactcagca acctgaatct ctgggactga
     9301 gtagcctaag tgccttttga gaagtgattg gacctatctg cacaggccct aaaattctga
     9361 gccccggaag agtggagatc cggactggtt ttactataga ttcttcaggc cgccgctcaa
     9421 tttggtttct ccaattcctg ccccagtaga aggagctcac tcatgggttc acatgtgatg
     9481 gccttccttg tactgctgca tcattaacta agtgactgag ctggccttcc attggccagg
     9541 ggagggctct cactccagac acttcctctg attggagatt tgcattgacg tcccaggctg
     9601 tccagagctg agcccattat gggaaggacc tgccttctgg aagctgctgc tccccggtgc
     9661 ttggaaaggt accacatccg tctggttcac ggcggttatt tcatttattc ctcacctcaa
     9721 ccctgcgagg agagtcccat ggccggttca cccaagacaa tggggatttt ttgtagctga
     9781 aattgatgga ctaacaaact tcagttttcc tggtctcctt cctctcgaaa caggaggcag
     9841 aggagctttt gcatcaggaa aacaccatgg aaacgccatg agcattggtg gtggcggagt
     9901 gagggttaaa cagtgagcct tcctgggatc cttttgatgc cagtgtgtcg ggagcctgga
     9961 gatggagcgc tcagccgagt ggccaggacg ttctgtcaac atgaaagcag caaaaacagt
    10021 ttgtcggggc tcagcgctga ccccgggctg gtgtcatttt caggaagggc ttggcacaag
    10081 aaagaccacc gccaggcacg ggattggggg tgacgtcgga taactcagta ggcccctata
    10141 gacccttgaa ttttagaatc tgaaaagaaa atcagctgtt tgtcttttat tagatgagct
    10201 tggcaaacag gatcacttct tgaactcctc tcactggtcc ccaacaagag acatcttccc
    10261 aggttcagaa aaccctttgg gatttctcgg ttgtggctta ttgccttgga tggagggcag
    10321 gtcccttcta gggggcaggg gtgggcctgg cagtcctagt gcccgttatg gggatatgga
    10381 gtcgtaggtt tcctctgctg gcatcacgtg aagacggtgg atccacatca caggccttga
    10441 gctgaagacc agctcttggg cagcccactt cagcctctcc tttccttatt atctcaaatc
    10501 aaagtcttat cttctcccct tcatcttcct catttctttc ttaggcgcag tagtgggcct
    10561 gaagtccttg acctttgcgt ctgtgtgtgt gtcatcatgg cggctcaggg ttctagactt
    10621 ttcttgaatc tgcagcattg cgctttgtgc gcgtgacgcc cccccccccc cccgctccgc
    10681 cccgcccacc cggccccgcc ccaccaggcc ttcttcggag caagagagaa catgggcctc
    10741 catcgccact gaacctcagc caagccgtca tccccagcat ctggcctccc ttctctcctc
    10801 ccccgctttc ggccagtgtc tggggtggag gagcaaacaa cttgtgggag gagatggagg
    10861 gacagcctgg cctggagctc tctgcctcct ttcctcgtgt gccatttttc agcctcacgc
    10921 ttcctgtgga tggatgatgc cagcactgac atttgtcgcc gagcgcctcc tctccccaag
    10981 gacttccccg cgtgactctt ttggggtctg gaaagagtgg ctctggggcc ttgggagcca
    11041 gaggggacag ggggacctgg cccaggtcac agcagactgt gagacgggcg aggggtggga
    11101 gctggccgaa cccacccaag cgcaaaggca gccccggccc ctttgcgtca tgtctttttc
    11161 agcctgagga gagagcaact tgacctaaaa aaattgtata tatgtgggtg ttggatcctt
    11221 tgtgtctctt tgtccagaag ctgtgcatgt gatgagagcc caggtctctg tactgtacag
    11281 agaactgttg tccttcaggt ttgttttcag aaagatgtga tggatgggcc gtccttgatg
    11341 agaccgcgtg cccgctggga ctggccttcc tccaggatgc tgggcccggc gtggtgtttc
    11401 ttctgtcagt ggacgagaac tcagaggagt tcagctccat gagtaggtga caaactcctg
    11461 gagactcagc tgacgatggt gccggtgtgc agaagacagt tgtcatcctg tgggataagc
    11521 gtgtgcccgt ttgcatttat ttggaacaaa aaaaggagct gcctggcagc ctggctctct
    11581 gcaaggtgct gttgagcccc tggtttgtgt ggttctgtga ccacaagtgc tgatggatgt
    11641 ggcgccatcc cagtcttgtc ggtgaaccat caccagcctg cttattggaa accaggcgca
    11701 gcaaggaagc taggattcaa cgccctcctt ccctgcctcc cagcccgcct ccaaaagaat
    11761 ttaatctgct ggacaacaaa caatactgtt ataaaacttt gaaaacaaga gggcgcggcc
    11821 tccctgacaa ggagaagggc atgccgggta atgggcgagg gagcctgcca ggcccgagat
    11881 ggagccaggc aagagcccag ttggctgggc acctgggtgc ccgcccctgc ccagcccacc
    11941 agccgtgcca tccccagtcc agaggagaag gaaccgaaac aaaagtgggg gcagcggagc
    12001 tcttgaaaag gggaagttgt cctgagactg gcagacagag gtcctgataa cagaatgagg
    12061 ctggcatagc cgtgaaggta cagccaccag cctggccagc tgcaggggaa gcaggagaga
    12121 aaggtgctcc aagctggctt tggactccag acctaccctc tgtctgccca gcctcccacc
    12181 ccccacctag ggaagtggaa ccaggtcatg ggcatgaccc ggtccatgtg ctctgccagg
    12241 agccctgaaa ccagcattcc cagcggcagg aagatggatg atctgggctc cacttccggc
    12301 gctcctcccc cactctggct ggaacttgcg tcagtcatat caaggaggcc ctcgggttgg
    12361 gtgccaggga gagcaagctg cttccagccg catgaaatca cctggctact tgcaactagg
    12421 ggacaaaatc agcatctggt ttcagagaac cgagagtatt ttagaactcg agagttggag
    12481 cccaaactca gccgtgcagt ggagaccaca gaggcaccag ggtgctggag aacaaagcaa
    12541 gtatcgaagc accggctcct tgcagaacca ggcgtgctct catctccacc caagtttaat
    12601 gtgttgtaca gtcagtaata cccaccccca tctatgcaga aatattgcct aggactaccc
    12661 tcaccctcaa tcttcctcat aattaagttc aagaacagaa tgagacggta gtccagctac
    12721 agaacaggag gcagtgggca gaagagtagg agcacagact ttggagtcag acctggaatc
    12781 gacaccattc actagtcatg ggactgtgga caagtttttg aaccacactg aggatcagtt
    12841 tcttctcctg ccaaaaaggg aatactacct actccgcaag actgttgtga gaattcaaga
    12901 gcacagcttg gtgttcaaat tttatttcct tctcttccct agagcagcac atgatgttat
    12961 gtccaggagg cgtaaaaagt agaagggttt atctagagtc ctgaagaatt ggtagggaac
    13021 cggagagatg cagattcttc tttctcctgg ttatggtatc agaggaaata cagacatatt
    13081 ttcttagctt caaacaacca aaaaagatgg tgcaagtagg agatgagaaa tctaatttga
    13141 acaccatttg caaacctaat tttcaggcag aatttgaaaa caacacaaaa caaaactcca
    13201 ttcttttatt agaggattat ctacttagta caattataag acactaatct ttttgtgtca
    13261 cagtagagaa taaataagat tggcaattaa cggggtcata tttgaatgtc ctgactgctc
    13321 acgtatggct gggaaggcgg agcccgtgat ctacgtgact aggacacatg gaagtgttgc
    13381 cctggctcag gtgaaaccca cctttgtgta gtgtctagag cctcacaggc agaaagggtg
    13441 cttgtttcct gatgacgtga gaaaatatgg gaaaatgctt tgcacactgt gaaatagttt
    13501 acaaagcagg gcaatactaa tgtacatatt aacccagttt agtaacagct ttggctattt
    13561 tatttcgtca tatatataat aatctgtagg gactggttat ggaattaagt aacttagaat
    13621 tcatgagttt tgtattgcga ttgtctgtgt aaattaccag ctttgacttt cgtgttcttt
    13681 gagcatcact ttgtaactct tctctgtgcc tttctaatgg atccatatat catgtcccgt
    13741 cacaagtgga actgcaagaa gacacctctg ctcggggcag aggctgggtc ttccgatcgc
    13801 atctcccttc tttcttcagt gagatcctct tcttctggaa gctggtttca catggtggct
    13861 tagatttttc catctttgta tctagcacca tttgaaatca gtgttttagg agtaagaatt
    13921 gcagcacagc aaaaggccaa ccgcagagga gctgctgctc gtgggatcag cttccctcct
    13981 tctgccacct gagccggttc aagaaaagga agaacttgag aatcaaagta cactcttgag
    14041 tgtgttgggt tgtggaaggg gacagtgcag ggatggggtc gtgttcaata gaaactcaga
    14101 ggcttgagca gagccagagg ttgtgattgt ctttctgttg acagggagcg gcaaccccta
    14161 gcagtagcct gttggtaagg cctttgagca cacgcttggg caatgccggg ttgggtactt
    14221 gattgcaata ggcaagggga ggggtgtgga ccagaaggac tatctcatca catcagcact
    14281 gtccacctgc tcctagatgc cgtgaaacat tcagctgcag ttgccgagca gctgaaatca
    14341 gacttgccac ctgcactgtc aaggtgccgg accccaccga gcaccactgg acccatctct
    14401 tacacaggct gaccgatttc tcctggtgtt cagagtctgt ttttgtctag caccatttga
    14461 aatcggttat gatgtagggg gaaaagcagc agcctcgagg cctcatgcca agtctggtca
    14521 gcaacagcct ggggcttcct ggaagatgga tgcgcagaga gagggggagg aaggttatgc
    14581 tttttcctgc tagcttcttt aactacatct acaatacttt atgcacgggt aatagatcag
    14641 ttaatggatt tttcagaagc aaatcactaa aatttatctg atgtcctcgg tttgccgaaa
    14701 tgtggtagtg atgtaaacta taaattggtt gctgttgaat tatctttcag tcatgcatcc
    14761 tgaccttaat aaatgcttta ctgtacacaa tt
//
LOCUS       XR_004351866           14685 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X47, misc_RNA.
ACCESSION   XR_004351866
VERSION     XR_004351866.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14685
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..14685
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..14685
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X47"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gggagggagg gagagctcct gggggaagaa ggttctgctg gaggtcagtc tgctgtcgct
       61 tctcctcagg ccacttttgg agggttgttc agatcccaat gagaaggaaa atgtcaaagt
      121 agaatgagtg cagaggaggg ctgctggcat atgaggaatg gttaaagcac gggcagatat
      181 accccagaga ggggaaggtt tcagcagaac gagtttgctg ggcagagttt tgtgtattga
      241 aaggactgtg atgtgatgtg ggtgtcgggc ttattactct gcggcagtga cagggcggcc
      301 gctgttggtg cagggagctg ggtcattgtc cctccctttg agctgcgaag gactcgaggg
      361 aggaaagatg ggtggccctc tgagatagtg agccccttca gcggtgctct tggtgttcac
      421 aggtaagctg aatggccatg acgcagggaa tgctaataat aaaaagtcat aatagttgcc
      481 acttcctgaa tgcttgttgt gtagcaggca gtgtgaccca gggctttact tgtatggact
      541 cacttaatct cctacaacac tgggcagggg tatgagtagc tccttagccc tactttatag
      601 acgagaaaac ttagcctgag aaatgaagta acccacccaa ggttccatac attggcctcc
      661 agcccaaggc cagtctcctt gtattggtga aaggtgaggc cggatgacct gtagggtgtc
      721 ttacaacacc aggtttctaa gtctctatct ggtgggtcat cccagccatt tgaatggggt
      781 tgggcagctc tcttgggtcc agggcaggag tggcggttac tgctctcctg gtgacctcac
      841 tgggactggg aagtcagcag gggtattccg ttggctgtta ggaactggcc ttgccgggga
      901 agtggctggg gagcccccag gcttatctga gcatcccaga tccttgcatc cgatgtcctc
      961 taaccctctg gtgactctgg ggtcttggaa gcaccagtgg tccttttttg tgtcagcttc
     1021 cgcagaagct tcttgactgt gtcgtcagcg cactcagcct gcaggtgtcc ccccaccccc
     1081 ttagctctgt cactgcagaa gggcacagag tgatgtccag gggccatgac ctgccttgtt
     1141 ttggggggcc agagtgggat taaggagcca gctgtcctcc tactgtccta gttctccagg
     1201 ctctggcaac cgggaaagtc cttgcttcca tgggcagagt tccccgaaga gggcctaaca
     1261 ccaagcctga cacatagtca gccccaggca tgttttcttg gaataacaaa tgtgtaggac
     1321 tcacctgcct tctcagtgct caccctaggc cctgaggact ctggagattt tagagggagg
     1381 gcattggagg gtgggccgct cctgtcactc cacattcagt ggcactggga gaagcttctc
     1441 agcatcctcc tttgtgtttt aaggctgtta ctgtttctct gcttcggggg caagaacact
     1501 gaccttccag gcctgaacca gatcctaacc tgagaataac ggctgcccgc cagtcccaga
     1561 ggccttcaga gagctgaacc ttcatgtgtt gttccaacac cttccctccg taaatgaaac
     1621 actcacagga ctgcccttta tcccacggtt ctggtcatca tcccctccct actcttgagc
     1681 tctctgtgtg cataggaggt actcacatca tcaaacattt tgtgggacct tacttttgtt
     1741 aaggcttaat attatgaaaa taatgtacaa tgcatcccca atatcgcccc caaatatgac
     1801 attaaatatt atgttttaga ctgccccaag ccctcgccca cccaaggctc gtcagatgag
     1861 agccttgtcc cccctccagc tcctgacaag gccggcgctt tgctgaaagt ccagacctgt
     1921 gccctggtgt gcatgatggc tctgaggtct ttcctgtccc tctcaggctg tgggcaaggt
     1981 catgggcgtg ggcatgcccc ctgtgtgggg gagaaggcag tatggaagtt aaagtgcaag
     2041 tcagagttgt ttggggaacc cccatcctac ttgtgtttgt gacaactgct ctctagttct
     2101 gactcagctg agtgaagcaa tagctggtac cggggcagga aagaaatgcc atttttgaga
     2161 cacgtggcac tcatgtggtc atacagaggt tagtacagcc ccgtgaatca tcagttgccc
     2221 aggttctcca taccctagat atgtctggtc ctgctcagca cttccctctt tgatcaagaa
     2281 ccccaggggc agcagtaaca tctaagggtc ctagcctgtg cctggagggc atctggccaa
     2341 gacccctcat ttccccagcc gaatctggcc ggtggcacag atggcagggt ccgccgtgta
     2401 gggatggggt agagctcctt tcagtccgac tcatgtggcc cggccacact cccatctctc
     2461 tggaaattat ttccatccgt tgacggccag gatttcaaga acagccagcc aagagttgcg
     2521 ttgggttact ccccgagtcc caagaagact ttgcctcctg catttcaggc aaccctagaa
     2581 gcccctcatt caggggcttt ggctagtgga atgaccatgt ttactgagcc ccagcccact
     2641 gtcagaatag taggtgcccg tcccattgcc agcctgggtt ttgcctgagg ctgagccatg
     2701 agccctctgg ggcagtagct tagacttaac gttcagtggc ctagggtaag gcagacgttt
     2761 cggccttttc cattttccca ggaggtggcg ggagccagct tgggcaggac agtttggagc
     2821 ctggattttt ggcctgagag gcagactgac tcagtctgcc cagaagaaag cgtcaactta
     2881 tgaatagagc atactggcca cgatatctgc caccctaggc ctgaccttcc ccctaaacaa
     2941 acgtgccccg tcactacact gcccttggcg tattccacac gggagtctct gttggtgctg
     3001 gggctcactt ctgtttgtta aggagctgac ttggccctca ctcatcttct ttcaccctgt
     3061 agtcagggga gtcctgtgtt ctcagggcca gcgtctggca ggccacttac tgcctgctgc
     3121 ctggttccag ctccccgccc gtggcggcat tccgtgtctg catctgcatc tcacctctgc
     3181 caggacctac cctccagcac aggctgtccc tagcccttgt ctctcggatt ttcacttggc
     3241 acgtggtgca gcattgtgtc cttggagtgt ttgttttcac tgctggggcc ttgtttcact
     3301 tcagctcagc aacctgggca gaagtgccat ggtcctttgg gttgggaatt tgatgggaaa
     3361 aactcctcag tggttctggg gtagttgttt ctggagactg acgagatgcg gtctttaagg
     3421 ctgttagacg gaccacatca tggtcgttat tgttgatcga agctattaac ggcacggttc
     3481 tttcaggaac ccttttcccc atggataaca tcagacgtct aatctacaag taccgtttct
     3541 gacaaccgcc ccccccccga ctcagcacgt tttcagactt tttctaatta tatatactta
     3601 tagattctgt gtttttattt cttcttagag ttccctgaga ttagaatttc cttaccaggt
     3661 agttaactgt cccagcaatt tggcttttat ttggtactca agctttttcc tcggcactca
     3721 agctttttcc tcgaaggccc tcctctgtct tcagcctatc acctcaacat actccacctt
     3781 gtcgacttgg tcttgtcagt acgaagcgag gtgtggttgt gcctgattgg tacttggttg
     3841 aaagactgag attgccaggt actacaggtc tcttgaggtg ttactaggcc ttttcttcca
     3901 gtgcctggta tggtaccaac cacaaaagca tcatggtcca tcatcaccat catcatcata
     3961 gtgatactgg taccagctga acattaactc tgtgttgggc attgtgctga acgctcctgt
     4021 atctcatacc atcctcacca ggaaaacccc taggaagtat ggatgaagct gaaaatagga
     4081 acttaggaag gtcaaataag tcgttcaagt ctgtataact agtagaggct gtattaggat
     4141 gcacgttcag acctgtctca ctttagagtc tgagtttttc accactgtct gcattatcct
     4201 tgtttagtcg tatgtcctca cgaagtgttt gttgaatggc aagattgttc ccacagtctg
     4261 gctggcctct gaggtatcac taaccatgat gaggatagca cccaatattt ttgaatactc
     4321 agattgctag gctctgtaat aatgtgatgt aagtgacatg cgtcaggtta atctatgtaa
     4381 tctgcagagc tcaatgagga cgatttcccc cgttctgcag attaggaaac cgaggctcag
     4441 aaaggctgag ttaagttgct caagatcaca cagctaaaga gtgtataagt tgggatttag
     4501 ctgccagtta tctcttgaac agtgcgagcc tgttctcttg atcactatgt tattgtctac
     4561 aaggaaaaaa aagattaatt tctacctctg tccctttctt ctcgctgccc ccttccttag
     4621 cttgggatgc tttttctgtg tctgtttctt ttcatcctac tctttctgag aggcccaggc
     4681 tgcgctcaga ctatgtctgt ccacattgaa cgttgcaaaa ttagttactc gatttatatt
     4741 ttcttaaact ttacttgtag acatatcctc acgttaaagc atcacctgat ttaagattgg
     4801 tgctccatac tgtaagagta gacctatttg tctatcttat ttctgaccaa aggaatggaa
     4861 cagagagcct agttatagac ccgtgtatat ctggacacct gatttatgac aaagggggca
     4921 ctgctgggca gtaggaaatg aacggtcatt ttaataataa acagtgctgg gtcagttgga
     4981 tgtccacaag gaaagaaatg atcttgacca ctacctcacg tcatgcacaa aaataaattc
     5041 cggagagatc atccatctca atgtgaaagt taagacaaaa taaaacttca tttacaaggt
     5101 cacatagagt atcttcataa ccttgaggta gccatacatt tttttaaaga agacaccaag
     5161 agcaccaaaa ataaaggaaa agattgataa gttggatgac attaaagtga ggaacttctc
     5221 atcatcaaag acatcaataa aagagagaaa aggcaggcag agtggaaagg atacacacaa
     5281 tacctacaac cggcaagtgg attcgtatcc agagtacgta aataatccaa cagacacgta
     5341 agaaaaagag cccctctccc ccccaaaaat gggcaaaaga acattccata cttataaact
     5401 gagttgtata cagttttctt ctcccaattc caggttttaa ccaatttgtc ctgggtcatt
     5461 ggcacagcct ggtggctggc cttgggaact gtctgatccc ctggctcatc ttgacatttt
     5521 cttttatgtc tggactgtgg acccttcatt ttgcatgtcc tgtgtcactc agctgttttt
     5581 ctgccacaag tgcctccttt ctcgtgaata cacaatacat aggtctcttc ctcttttcct
     5641 ttggcttgtt aacttttgac catctatttt aagactcttt ctctccggct tcttctccct
     5701 taccatccct cctgcctcca cccccacccc tttttcgttt ccctttttgt acctccttgt
     5761 ttagcctaaa gacttttcgt tgcaatggtt atcctaaaat atctgaaagc ctttggcggg
     5821 ggggtaggct cgtaccgcgg gctccagagg cagagcgaag acttaaggcg ggtggttagc
     5881 taccttgaga gtgatgtcat ctcagttatg ttccattgtc tgagacctcc aaaggtgggc
     5941 cggggtgggg gtggggggtg gttactgaac gaagtagagg ctgggcagtg ccttggtctt
     6001 agtgttgttt acggagggcc ctgtgccttg gatgggcagc tggattatga taatcctttc
     6061 caatcttatc aacaaagccc caaatggagc ctttgaggat gcccagagca gcaactctca
     6121 tctgggagag agggcctgtg tattggaatg attcttttgt ccttctggtg ggtcaggatg
     6181 gggcacaaat actagcactc taatggtttc attcatagtt aaaaataatt ccgaggtacc
     6241 cctccacctg cagccctcaa catggggctg gttgacaacc actgacctga agggcaggat
     6301 ttcccttatt tccttctgtg ccattctttt cctccattag cagcatctgt gaggtgaatc
     6361 ctttcggtta tcttcttctt tgtttcttta ttttatttaa atccccactc gggcagtgct
     6421 tgttcctata gcatattttg gacacattac cacagagaaa acacaatgga aactctgcag
     6481 gtatgtttgg acttcaaaaa ttgggggaca gtgtttaaaa ttcaagagtt taatgtagta
     6541 aatgtagatt tttgccttct cctgaaaaat tggacgatct gggtctctac tcccagatgg
     6601 ccccaagcag gcagagcagg ggaggggctt gtccctgctc ctgacacact ccctccccgt
     6661 ggcttgcatc ctttgctacc tgccgagtcc cccaaggcat tggggtttgt ctcttcctga
     6721 agtgggtgaa ataggctctt gtgggctagc ctgggaaccc aaccagtacg tttaatatcg
     6781 tttcagtgag aaaatgagtt ccggctttta aagagcagac tttggaaaca tcagagatgc
     6841 taatttggga atgcttgtag ggtcctctca cagaacctgt acgtcttgag gtgatggcct
     6901 gtgtcttata cttcttctgc gcggaatgtg gccttagcat ctagtaggta cttaatcagt
     6961 gatttacctc ctggggttac cgagtgccct ttgtctgctc ctcccttcca ggcggtaaac
     7021 agaaacacct tctccctgtg gacctgaacc tgtcagtgct gcccgagacc agaccgctgc
     7081 ctgatttatc tagaacaccc actcgagccc ttgatactcg tgtggagttt gagatcagtc
     7141 ccctgtacag agctccctgt cttgagagaa atgacttctt tcctgatgaa agatccagcc
     7201 cgtgttcagg aggccctaat gaggaaatgg gaggacagag aggctgcact aagcctgcgc
     7261 tgttggctga tgcccgccga actggagttc gtggcaattc cagagtgctt gcattccaaa
     7321 cccagggcga gggctgggta aaagtccagc tcatcccctt taaagaaaaa aattcttcct
     7381 ctctgacatt tcgaggtttt gacccagatc agtcagaggc cacggagagc tcgcaatgtc
     7441 tggagagtgt gtttagttcc cgaggcctgg agctgcagag aagccggagc gagccagtga
     7501 cctgctgggc ttgagttgaa gccctgcctt ttcaagtgtg ccctggccca gcctccccag
     7561 acctcacagg gtggacggaa ggagccagca ccttcccctc actccaaagt tatctttacc
     7621 ccctgaaatc aaacatcgca tgcagcaccc tgtaaaactg cttccttgta ggcttgagcg
     7681 tgcttgctga gtaaacatcc tcccatgttt ttggaactga atccatttct gcttcctggt
     7741 catcccatgc gggttctttc tgttctgggt gccatgcaga atcaggttaa tagaaggcag
     7801 acctagcgtt gggcaggggc acctaaaatg acagtttcaa ccttagtaaa ttgtaaggag
     7861 agtaacagcg tcgtgggaag aaagagaaaa gacttagacg aaaaatgaaa tgaaacagag
     7921 cctcccaaac atagtgctgc catcatgctt tgcaagtcag agttggttcc tgccgagccc
     7981 tgagacgggg accttccttt gcatgggctc aagctcagtt gtgcggtggc tgaaccacag
     8041 tcagcctccg tctgtaggtt gtgtggctgc gtctggccct cctgacccta acttgctctt
     8101 gccccgtctc tcgtgactta tttgcctctt ctctctcact tccacccacc cgtgacatct
     8161 ccatcgccat ggcattgagc agccacgtca tccaccatgt tcacggggtg atgggccaac
     8221 tctgtgctga gccctacttc cttctcgttc tccctcctga agcaggaggc tccctggcag
     8281 agctcaaagc cctttgttta tttgatcctg ggcgtcttgg ataaatcagg aatgtcctga
     8341 catgaactta ggcatgtttt tcttccatgg aaaaggaaac tacggcaaat ggtatttaag
     8401 taggcagagg accattccgg gggacttgcg ttggtgccat caaggccaca ttcctttggt
     8461 catcagacca gtaggtgact tctttattgg catgctctac cctggagccc agaaggtgtg
     8521 aatttgaagc actttctccc ctgctgagag cttggcacag atgctctgga cttcttttaa
     8581 agccatggag taccatggtt gtcttccagg tggtcttctt tctgctgggt gaaaccttgg
     8641 cccagagtag ttgcttgaag aaggctgctt gggagttggg gtacaggata aggttgctgc
     8701 ctggcctctc attctccagc cgtcttgaag ttgcaatgat ctcgatgtgt gatctacttt
     8761 gagtcagctg ccccaggacc tgaacacttc cgatcagggc taggctcttg tggtacaacc
     8821 ggtcgccaga aacctttgcg ggtctgcttt ctttggatgt ggcgttgtgg gaacccaaga
     8881 attcctgagt ctgtctaggt atatggagtc cagtgagttt agcatctgag ttgttctgga
     8941 actatttctg ggtctggggg caggaaaatg ttgggagcta tgtgctttgc tgcagtggag
     9001 acctgtcagt aaccaaaaaa caagcccagt cagtctccag agcattggtg ggaacccccc
     9061 ccccccccag ctccctgtga gagtttccag gtgtgaatgc ccatgtatta ccatggcagg
     9121 ggcagtgcgg ggtgggctgg cgggtgctca tctcatttgg ccacctgccc tggagagaag
     9181 aagccagtcg ttggccactg caggtccagg cttggctgcc gctctgtttt gctgcttttc
     9241 atgttgtcag aggatcttct tgggaacaaa tgactcagca acctgaatct ctgggactga
     9301 gtagcctaag tgccttttga gaagtgattg gacctatctg cacaggccct aaaattctga
     9361 gccccggaag agtggagatc cggactggtt ttactataga ttcttcaggc cgccgctcaa
     9421 tttggtttct ccaattcctg ccccagtaga aggagctcac tcatggggag atttgcattg
     9481 acgtcccagg ctgtccagag ctgagcccat tatgggaagg acctgccttc tggaagctgc
     9541 tgctccccgg tgcttggaaa ggtaccacat ccgtctggtt cacggcggtt atttcattta
     9601 ttcctcacct caaccctgcg aggagagtcc catggccggt tcacccaaga caatggggat
     9661 tttttgtagc tgaaattgat ggactaacaa acttcagttt tcctggtctc cttcctctcg
     9721 aaacaggagg cagaggagct tttgcatcag gaaaacacca tggaaacgcc atgagcattg
     9781 gtggtggcgg agtgagggtt aaacagtgag ccttcctggg atccttttga tgccagtgtg
     9841 tcgggagcct ggagatggag cgctcagccg agtggccagg acgttctgtc aacatgaaag
     9901 cagcaaaaac agtttgtcgg ggctcagcgc tgaccccggg ctggtgtcat tttcaggaag
     9961 ggcttggcac aagaaagacc accgccaggc acgggattgg gggtgacgtc ggataactca
    10021 gtaggcccct atagaccctt gaattttaga atctgaaaag aaaatcagct gtttgtcttt
    10081 tattagatga gcttggcaaa caggatcact tcttgaactc ctctcactgg tccccaacaa
    10141 gagacatctt cccaggttca gaaaaccctt tgggatttct cggttgtggc ttattgcctt
    10201 ggatggaggg caggtccctt ctagggggca ggggtgggcc tggcagtcct agtgcccgtt
    10261 atggggatat ggagtcgtag gtttcctctg ctggcatcac gtgaagacgg tggatccaca
    10321 tcacaggcct tgagctgaag accagctctt gggcagccca cttcagcctc tcctttcctt
    10381 attatctcaa atcaaagtct tatcttctcc ccttcatctt cctcatttct ttcttaggcg
    10441 cagtagtggg cctgaagtcc ttgacctttg cgtctgtgtg tgtgtcatca tggcggctca
    10501 gggttctaga cttttcttga atctgcagca ttgcgctttg tgcgcgtgac gccccccccc
    10561 ccccccgctc cgccccgccc acccggcccc gccccaccag gccttcttcg gagcaagaga
    10621 gaacatgggc ctccatcgcc actgaacctc agccaagccg tcatccccag catctggcct
    10681 cccttctctc ctcccccgct ttcggccagt gtctggggtg gaggagcaaa caacttgtgg
    10741 gaggagatgg agggacagcc tggcctggag ctctctgcct cctttcctcg tgtgccattt
    10801 ttcagcctca cgcttcctgt ggatggatga tgccagcact gacatttgtc gccgagcgcc
    10861 tcctctcccc aaggacttcc ccgcgtgact cttttggggt ctggaaagag tggctctggg
    10921 gccttgggag ccagagggga cagggggacc tggcccaggt cacagcagac tgtgagacgg
    10981 gcgaggggtg ggagctggcc gaacccaccc aagcgcaaag gcagccccgg cccctttgcg
    11041 tcatgtcttt ttcagcctga ggagagagca acttgaccta aaaaaattgt atatatgtgg
    11101 gtgttggatc ctttgtgtct ctttgtccag aagctgtgca tgtgatgaga gcccaggtct
    11161 ctgtactgta cagagaactg ttgtccttca ggtttgtttt cagaaagatg tgatggatgg
    11221 gccgtccttg atgagaccgc gtgcccgctg ggactggcct tcctccagga tgctgggccc
    11281 ggcgtggtgt ttcttctgtc agtggacgag aactcagagg agttcagctc catgagtagg
    11341 tgacaaactc ctggagactc agctgacgat ggtgccggtg tgcagaagac agttgtcatc
    11401 ctgtgggata agcgtgtgcc cgtttgcatt tatttggaac aaaaaaagga gctgcctggc
    11461 agcctggctc tctgcaaggt gctgttgagc ccctggtttg tgtggttctg tgaccacaag
    11521 tgctgatgga tgtggcgcca tcccagtctt gtcggtgaac catcaccagc ctgcttattg
    11581 gaaaccaggc gcagcaagga agctaggatt caacgccctc cttccctgcc tcccagcccg
    11641 cctccaaaag aatttaatct gctggacaac aaacaatact gttataaaac tttgaaaaca
    11701 agagggcgcg gcctccctga caaggagaag ggcatgccgg gtaatgggcg agggagcctg
    11761 ccaggcccga gatggagcca ggcaagagcc cagttggctg ggcacctggg tgcccgcccc
    11821 tgcccagccc accagccgtg ccatccccag tccagaggag aaggaaccga aacaaaagtg
    11881 ggggcagcgg agctcttgaa aaggggaagt tgtcctgaga ctggcagaca gaggtcctga
    11941 taacagaatg aggctggcat agccgtgaag gtacagccac cagcctggcc agctgcaggg
    12001 gaagcaggag agaaaggtgc tccaagctgg ctttggactc cagacctacc ctctgtctgc
    12061 ccagcctccc accccccacc tagggaagtg gaaccaggtc atgggcatga cccggtccat
    12121 gtgctctgcc aggagccctg aaaccagcat tcccagcggc aggaagatgg atgatctggg
    12181 ctccacttcc ggcgctcctc ccccactctg gctggaactt gcgtcagtca tatcaaggag
    12241 gccctcgggt tgggtgccag ggagagcaag ctgcttccag ccgcatgaaa tcacctggct
    12301 acttgcaact aggggacaaa atcagcatct ggtttcagag aaccgagagt attttagaac
    12361 tcgagagttg gagcccaaac tcagccgtgc agtggagacc acagaggcac cagggtgctg
    12421 gagaacaaag caagtatcga agcaccggct ccttgcagaa ccaggcgtgc tctcatctcc
    12481 acccaagttt aatgtgttgt acagtcagta atacccaccc ccatctatgc agaaatattg
    12541 cctaggacta ccctcaccct caatcttcct cataattaag ttcaagaaca gaatgagacg
    12601 gtagtccagc tacagaacag gaggcagtgg gcagaagagt aggagcacag actttggagt
    12661 cagacctgga atcgacacca ttcactagtc atgggactgt ggacaagttt ttgaaccaca
    12721 ctgaggatca gtttcttctc ctgccaaaaa gggaatacta cctactccgc aagactgttg
    12781 tgagaattca agagcacagc ttggtgttca aattttattt ccttctcttc cctagagcag
    12841 cacatgatgt tatgtccagg aggcgtaaaa agtagaaggg tttatctaga gtcctgaaga
    12901 attggtaggg aaccggagag atgcagattc ttctttctcc tggttatggt atcagaggaa
    12961 atacagacat attttcttag cttcaaacaa ccaaaaaaga tggtgcaagt aggagatgag
    13021 aaatctaatt tgaacaccat ttgcaaacct aattttcagg cagaatttga aaacaacaca
    13081 aaacaaaact ccattctttt attagaggat tatctactta gtacaattat aagacactaa
    13141 tctttttgtg tcacagtaga gaataaataa gattggcaat taacggggtc atatttgaat
    13201 gtcctgactg ctcacgtatg gctgggaagg cggagcccgt gatctacgtg actaggacac
    13261 atggaagtgt tgccctggct caggtgaaac ccacctttgt gtagtgtcta gagcctcaca
    13321 ggcagaaagg gtgcttgttt cctgatgacg tgagaaaata tgggaaaatg ctttgcacac
    13381 tgtgaaatag tttacaaagc agggcaatac taatgtacat attaacccag tttagtaaca
    13441 gctttggcta ttttatttcg tcatatatat aataatctgt agggactggt tatggaatta
    13501 agtaacttag aattcatgag ttttgtattg cgattgtctg tgtaaattac cagctttgac
    13561 tttcgtgttc tttgagcatc actttgtaac tcttctctgt gcctttctaa tggatccata
    13621 tatcatgtcc cgtcacaagt ggaactgcaa gaagacacct ctgctcgggg cagaggctgg
    13681 gtcttccgat cgcatctccc ttctttcttc agtgagatcc tcttcttctg gaagctggtt
    13741 tcacatggtg gcttagattt ttccatcttt gtatctagca ccatttgaaa tcagtgtttt
    13801 aggagtaaga attgcagcac agcaaaaggc caaccgcaga ggagctgctg ctcgtgggat
    13861 cagcttccct ccttctgcca cctgagccgg ttcaagaaaa ggaagaactt gagaatcaaa
    13921 gtacactctt gagtgtgttg ggttgtggaa ggggacagtg cagggatggg gtcgtgttca
    13981 atagaaactc agaggcttga gcagagccag aggttgtgat tgtctttctg ttgacaggga
    14041 gcggcaaccc ctagcagtag cctgttggta aggcctttga gcacacgctt gggcaatgcc
    14101 gggttgggta cttgattgca ataggcaagg ggaggggtgt ggaccagaag gactatctca
    14161 tcacatcagc actgtccacc tgctcctaga tgccgtgaaa cattcagctg cagttgccga
    14221 gcagctgaaa tcagacttgc cacctgcact gtcaaggtgc cggaccccac cgagcaccac
    14281 tggacccatc tcttacacag gctgaccgat ttctcctggt gttcagagtc tgtttttgtc
    14341 tagcaccatt tgaaatcggt tatgatgtag ggggaaaagc agcagcctcg aggcctcatg
    14401 ccaagtctgg tcagcaacag cctggggctt cctggaagat ggatgcgcag agagaggggg
    14461 aggaaggtta tgctttttcc tgctagcttc tttaactaca tctacaatac tttatgcacg
    14521 ggtaatagat cagttaatgg atttttcaga agcaaatcac taaaatttat ctgatgtcct
    14581 cggtttgccg aaatgtggta gtgatgtaaa ctataaattg gttgctgttg aattatcttt
    14641 cagtcatgca tcctgacctt aataaatgct ttactgtaca caatt
//
LOCUS       XR_004351867            6062 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X48, misc_RNA.
ACCESSION   XR_004351867
VERSION     XR_004351867.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6062
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6062
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..6062
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X48"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gtggcggagg agatgggaag ggcagaagcc aaggtaaggc caagcaacca gggagatgta
       61 cagatgctct cctgagtgca tttgacattc ttgccccagg tcgcttctca gtgttgttcc
      121 cctgcccctg acacagtccc tcagtttcca tgagttcgag ggagaccagc atatttttgg
      181 atgggctcaa gccaaacggt gaggaaagta atgctactta gtggactaaa taccagtgat
      241 gttggagtta cctgcttttg gttgttgttt ttttgtttgt ttagagtttt ctgtctcctt
      301 ttgttcatag aagtcacttg ggggatggat tatctgataa atcctggtgt tctcggagtt
      361 cacgttcact gcttccctta tcctcatgtg aaggactaag atgatgattg tgggctccgg
      421 aaccatgttt tagattattg ctgtctgatc cagcagccag gacagccgaa accaaaagcc
      481 tctgaagtcc tgttcagcga tggaaatgtg gttggtccca cctttgtccc tggagttgtc
      541 aagcatgaaa atggggagga gttcatcagg gaaggacaga gttcggagga agtctcctaa
      601 gaggaggatg tcactagctt gcctagcaca gtggttggga gtctggtact ggctgcatac
      661 cctgcacagg ctcctcagcc cctaacctgt aaagtggagg tgatggccat cccagcttcc
      721 aagtgccgtg gtgaggaccg actgagctgt gatacacgca tggggccggc accaggcctg
      781 atgcgtggtg agtgattagt ggatattgag gtccacgttc atgaggcgga tgctgtttgg
      841 acaggagatt tgcattgacg tcccaggctg tccagagctg agcccattat gggaaggacc
      901 tgccttctgg aagctgctgc tccccggtgc ttggaaaggt accacatccg tctggttcac
      961 ggcggttatt tcatttattc ctcacctcaa ccctgcgagg agagtcccat ggccggttca
     1021 cccaagacaa tggggatttt ttgtagctga aattgatgga ctaacaaact tcagttttcc
     1081 tggtctcctt cctctcgaaa caggaggcag aggagctttt gcatcaggaa aacaccatgg
     1141 aaacgccatg agcattggtg gtggcggagt gagggttaaa cagtgagcct tcctgggatc
     1201 cttttgatgc cagtgtgtcg ggagcctgga gatggagcgc tcagccgagt ggccaggacg
     1261 ttctgtcaac atgaaagcag caaaaacagt ttgtcggggc tcagcgctga ccccgggctg
     1321 gtgtcatttt caggaagggc ttggcacaag aaagaccacc gccaggcacg ggattggggg
     1381 tgacgtcgga taactcagta ggcccctata gacccttgaa ttttagaatc tgaaaagaaa
     1441 atcagctgtt tgtcttttat tagatgagct tggcaaacag gatcacttct tgaactcctc
     1501 tcactggtcc ccaacaagag acatcttccc aggttcagaa aaccctttgg gatttctcgg
     1561 ttgtggctta ttgccttgga tggagggcag gtcccttcta gggggcaggg gtgggcctgg
     1621 cagtcctagt gcccgttatg gggatatgga gtcgtaggtt tcctctgctg gcatcacgtg
     1681 aagacggtgg atccacatca caggccttga gctgaagacc agctcttggg cagcccactt
     1741 cagcctctcc tttccttatt atctcaaatc aaagtcttat cttctcccct tcatcttcct
     1801 catttctttc ttaggcgcag tagtgggcct gaagtccttg acctttgcgt ctgtgtgtgt
     1861 gtcatcatgg cggctcaggg ttctagactt ttcttgaatc tgcagcattg cgctttgtgc
     1921 gcgtgacgcc cccccccccc cccgctccgc cccgcccacc cggccccgcc ccaccaggcc
     1981 ttcttcggag caagagagaa catgggcctc catcgccact gaacctcagc caagccgtca
     2041 tccccagcat ctggcctccc ttctctcctc ccccgctttc ggccagtgtc tggggtggag
     2101 gagcaaacaa cttgtgggag gagatggagg gacagcctgg cctggagctc tctgcctcct
     2161 ttcctcgtgt gccatttttc agcctcacgc ttcctgtgga tggatgatgc cagcactgac
     2221 atttgtcgcc gagcgcctcc tctccccaag gacttccccg cgtgactctt ttggggtctg
     2281 gaaagagtgg ctctggggcc ttgggagcca gaggggacag ggggacctgg cccaggtcac
     2341 agcagactgt gagacgggcg aggggtggga gctggccgaa cccacccaag cgcaaaggca
     2401 gccccggccc ctttgcgtca tgtctttttc agcctgagga gagagcaact tgacctaaaa
     2461 aaattgtata tatgtgggtg ttggatcctt tgtgtctctt tgtccagaag ctgtgcatgt
     2521 gatgagagcc caggtctctg tactgtacag agaactgttg tccttcaggt ttgttttcag
     2581 aaagatgtga tggatgggcc gtccttgatg agaccgcgtg cccgctggga ctggccttcc
     2641 tccaggatgc tgggcccggc gtggtgtttc ttctgtcagt ggacgagaac tcagaggagt
     2701 tcagctccat gagtaggtga caaactcctg gagactcagc tgacgatggt gccggtgtgc
     2761 agaagacagt tgtcatcctg tgggataagc gtgtgcccgt ttgcatttat ttggaacaaa
     2821 aaaaggagct gcctggcagc ctggctctct gcaaggtgct gttgagcccc tggtttgtgt
     2881 ggttctgtga ccacaagtgc tgatggatgt ggcgccatcc cagtcttgtc ggtgaaccat
     2941 caccagcctg cttattggaa accaggcgca gcaaggaagc taggattcaa cgccctcctt
     3001 ccctgcctcc cagcccgcct ccaaaagaat ttaatctgct ggacaacaaa caatactgtt
     3061 ataaaacttt gaaaacaaga gggcgcggcc tccctgacaa ggagaagggc atgccgggta
     3121 atgggcgagg gagcctgcca ggcccgagat ggagccaggc aagagcccag ttggctgggc
     3181 acctgggtgc ccgcccctgc ccagcccacc agccgtgcca tccccagtcc agaggagaag
     3241 gaaccgaaac aaaagtgggg gcagcggagc tcttgaaaag gggaagttgt cctgagactg
     3301 gcagacagag gtcctgataa cagaatgagg ctggcatagc cgtgaaggta cagccaccag
     3361 cctggccagc tgcaggggaa gcaggagaga aaggtgctcc aagctggctt tggactccag
     3421 acctaccctc tgtctgccca gcctcccacc ccccacctag ggaagtggaa ccaggtcatg
     3481 ggcatgaccc ggtccatgtg ctctgccagg agccctgaaa ccagcattcc cagcggcagg
     3541 aagatggatg atctgggctc cacttccggc gctcctcccc cactctggct ggaacttgcg
     3601 tcagtcatat caaggaggcc ctcgggttgg gtgccaggga gagcaagctg cttccagccg
     3661 catgaaatca cctggctact tgcaactagg ggacaaaatc agcatctggt ttcagagaac
     3721 cgagagtatt ttagaactcg agagttggag cccaaactca gccgtgcagt ggagaccaca
     3781 gaggcaccag ggtgctggag aacaaagcaa gtatcgaagc accggctcct tgcagaacca
     3841 ggcgtgctct catctccacc caagtttaat gtgttgtaca gtcagtaata cccaccccca
     3901 tctatgcaga aatattgcct aggactaccc tcaccctcaa tcttcctcat aattaagttc
     3961 aagaacagaa tgagacggta gtccagctac agaacaggag gcagtgggca gaagagtagg
     4021 agcacagact ttggagtcag acctggaatc gacaccattc actagtcatg ggactgtgga
     4081 caagtttttg aaccacactg aggatcagtt tcttctcctg ccaaaaaggg aatactacct
     4141 actccgcaag actgttgtga gaattcaaga gcacagcttg gtgttcaaat tttatttcct
     4201 tctcttccct agagcagcac atgatgttat gtccaggagg cgtaaaaagt agaagggttt
     4261 atctagagtc ctgaagaatt ggtagggaac cggagagatg cagattcttc tttctcctgg
     4321 ttatggtatc agaggaaata cagacatatt ttcttagctt caaacaacca aaaaagatgg
     4381 tgcaagtagg agatgagaaa tctaatttga acaccatttg caaacctaat tttcaggcag
     4441 aatttgaaaa caacacaaaa caaaactcca ttcttttatt agaggattat ctacttagta
     4501 caattataag acactaatct ttttgtgtca cagtagagaa taaataagat tggcaattaa
     4561 cggggtcata tttgaatgtc ctgactgctc acgtatggct gggaaggcgg agcccgtgat
     4621 ctacgtgact aggacacatg gaagtgttgc cctggctcag gtgaaaccca cctttgtgta
     4681 gtgtctagag cctcacaggc agaaagggtg cttgtttcct gatgacgtga gaaaatatgg
     4741 gaaaatgctt tgcacactgt gaaatagttt acaaagcagg gcaatactaa tgtacatatt
     4801 aacccagttt agtaacagct ttggctattt tatttcgtca tatatataat aatctgtagg
     4861 gactggttat ggaattaagt aacttagaat tcatgagttt tgtattgcga ttgtctgtgt
     4921 aaattaccag ctttgacttt cgtgttcttt gagcatcact ttgtaactct tctctgtgcc
     4981 tttctaatgg atccatatat catgtcccgt cacaagtgga actgcaagaa gacacctctg
     5041 ctcggggcag aggctgggtc ttccgatcgc atctcccttc tttcttcagt gagatcctct
     5101 tcttctggaa gctggtttca catggtggct tagatttttc catctttgta tctagcacca
     5161 tttgaaatca gtgttttagg agtaagaatt gcagcacagc aaaaggccaa ccgcagagga
     5221 gctgctgctc gtgggatcag cttccctcct tctgccacct gagccggttc aagaaaagga
     5281 agaacttgag aatcaaagta cactcttgag tgtgttgggt tgtggaaggg gacagtgcag
     5341 ggatggggtc gtgttcaata gaaactcaga ggcttgagca gagccagagg ttgtgattgt
     5401 ctttctgttg acagggagcg gcaaccccta gcagtagcct gttggtaagg cctttgagca
     5461 cacgcttggg caatgccggg ttgggtactt gattgcaata ggcaagggga ggggtgtgga
     5521 ccagaaggac tatctcatca catcagcact gtccacctgc tcctagatgc cgtgaaacat
     5581 tcagctgcag ttgccgagca gctgaaatca gacttgccac ctgcactgtc aaggtgccgg
     5641 accccaccga gcaccactgg acccatctct tacacaggct gaccgatttc tcctggtgtt
     5701 cagagtctgt ttttgtctag caccatttga aatcggttat gatgtagggg gaaaagcagc
     5761 agcctcgagg cctcatgcca agtctggtca gcaacagcct ggggcttcct ggaagatgga
     5821 tgcgcagaga gagggggagg aaggttatgc tttttcctgc tagcttcttt aactacatct
     5881 acaatacttt atgcacgggt aatagatcag ttaatggatt tttcagaagc aaatcactaa
     5941 aatttatctg atgtcctcgg tttgccgaaa tgtggtagtg atgtaaacta taaattggtt
     6001 gctgttgaat tatctttcag tcatgcatcc tgaccttaat aaatgcttta ctgtacacaa
     6061 tt
//
LOCUS       XR_004351868            6325 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X49, misc_RNA.
ACCESSION   XR_004351868
VERSION     XR_004351868.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6325
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6325
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..6325
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X49"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 gtggcggagg agatgggaag ggcagaagcc aaggtaaggc caagcaacca gggagatgta
       61 cagatgctct cctgagtgca tttgacattc ttgccccagg tcgcttctca gtgttgttcc
      121 cctgcccctg acacagtccc tcagtttcca tgagttcgag ggagaccagc atatttttgg
      181 atgggctcaa gccaaacggt gaggaaagta atgctactta gtggactaaa taccagtgat
      241 gttggagtta cctgcttttg gttgttgttt ttttgtttgt ttagagtttt ctgtctcctt
      301 ttgttcatag aagtcacttg ggggatggat tatctgataa atcctggtgt tctcggagtt
      361 cacgttcact gcttccctta tcctcatgtg aaggactaag atgatgattg tgggctccgg
      421 aaccatgttt tagattattg ctgtctgatc cagcagccag gacagccgaa accaaaagcc
      481 tctgaagtcc tgttcagcga tggaaatgtg gttggtccca cctttgtccc tggagttgtc
      541 aagcatgaaa atggggagga gttcatcagg gaaggacaga gttcggagga agtctcctaa
      601 gaggaggatg tcactagctt gcctagcaca gtggttggga gtctggtact ggctgcatac
      661 cctgcacagg ctcctcagcc cctaacctgt aaagtggagg tgatggccat cccagcttcc
      721 aagtgccgtg gtgaggaccg actgagctgt gatacacgca tggggccggc accaggcctg
      781 atgcgtggtg agtgattagt ggatattgag gtccacgttc atgaggcgga tgctgtttgg
      841 acaggagatt tgcattgacg tcccaggctg tccagagctg agcccattat gggaaggacc
      901 tgccttctgg aagctgctgc tccccggtgc ttggaaagtg atactctcca cgcctcctct
      961 ccactgcacc cacctgcggc agtcccaccg tcttccgtgg acctctcctg attaccttca
     1021 caagaagcag ccctcctccc atccggccag actcccatac gcttcatgcc tcttttgtgc
     1081 tactgtagat gtgctgtggt tcttcgtgta taagtcttat gtcacctatt agattgtgag
     1141 ccccaggaag ctaggggaaa gaagggaaac atgtacctgc gtggtgcttt ctgtttgcca
     1201 ggtaccacat ccgtctggtt cacggcggtt atttcattta ttcctcacct caaccctgcg
     1261 aggagagtcc catggccggt tcacccaaga caatggggat tttttgtagc tgaaattgat
     1321 ggactaacaa acttcagttt tcctggtctc cttcctctcg aaacaggagg cagaggagct
     1381 tttgcatcag gaaaacacca tggaaacgcc atgagcattg gtggtggcgg agtgagggtt
     1441 aaacagtgag ccttcctggg atccttttga tgccagtgtg tcgggagcct ggagatggag
     1501 cgctcagccg agtggccagg acgttctgtc aacatgaaag cagcaaaaac agtttgtcgg
     1561 ggctcagcgc tgaccccggg ctggtgtcat tttcaggaag ggcttggcac aagaaagacc
     1621 accgccaggc acgggattgg gggtgacgtc ggataactca gtaggcccct atagaccctt
     1681 gaattttaga atctgaaaag aaaatcagct gtttgtcttt tattagatga gcttggcaaa
     1741 caggatcact tcttgaactc ctctcactgg tccccaacaa gagacatctt cccaggttca
     1801 gaaaaccctt tgggatttct cggttgtggc ttattgcctt ggatggaggg caggtccctt
     1861 ctagggggca ggggtgggcc tggcagtcct agtgcccgtt atggggatat ggagtcgtag
     1921 gtttcctctg ctggcatcac gtgaagacgg tggatccaca tcacaggcct tgagctgaag
     1981 accagctctt gggcagccca cttcagcctc tcctttcctt attatctcaa atcaaagtct
     2041 tatcttctcc ccttcatctt cctcatttct ttcttaggcg cagtagtggg cctgaagtcc
     2101 ttgacctttg cgtctgtgtg tgtgtcatca tggcggctca gggttctaga cttttcttga
     2161 atctgcagca ttgcgctttg tgcgcgtgac gccccccccc ccccccgctc cgccccgccc
     2221 acccggcccc gccccaccag gccttcttcg gagcaagaga gaacatgggc ctccatcgcc
     2281 actgaacctc agccaagccg tcatccccag catctggcct cccttctctc ctcccccgct
     2341 ttcggccagt gtctggggtg gaggagcaaa caacttgtgg gaggagatgg agggacagcc
     2401 tggcctggag ctctctgcct cctttcctcg tgtgccattt ttcagcctca cgcttcctgt
     2461 ggatggatga tgccagcact gacatttgtc gccgagcgcc tcctctcccc aaggacttcc
     2521 ccgcgtgact cttttggggt ctggaaagag tggctctggg gccttgggag ccagagggga
     2581 cagggggacc tggcccaggt cacagcagac tgtgagacgg gcgaggggtg ggagctggcc
     2641 gaacccaccc aagcgcaaag gcagccccgg cccctttgcg tcatgtcttt ttcagcctga
     2701 ggagagagca acttgaccta aaaaaattgt atatatgtgg gtgttggatc ctttgtgtct
     2761 ctttgtccag aagctgtgca tgtgatgaga gcccaggtct ctgtactgta cagagaactg
     2821 ttgtccttca ggtttgtttt cagaaagatg tgatggatgg gccgtccttg atgagaccgc
     2881 gtgcccgctg ggactggcct tcctccagga tgctgggccc ggcgtggtgt ttcttctgtc
     2941 agtggacgag aactcagagg agttcagctc catgagtagg tgacaaactc ctggagactc
     3001 agctgacgat ggtgccggtg tgcagaagac agttgtcatc ctgtgggata agcgtgtgcc
     3061 cgtttgcatt tatttggaac aaaaaaagga gctgcctggc agcctggctc tctgcaaggt
     3121 gctgttgagc ccctggtttg tgtggttctg tgaccacaag tgctgatgga tgtggcgcca
     3181 tcccagtctt gtcggtgaac catcaccagc ctgcttattg gaaaccaggc gcagcaagga
     3241 agctaggatt caacgccctc cttccctgcc tcccagcccg cctccaaaag aatttaatct
     3301 gctggacaac aaacaatact gttataaaac tttgaaaaca agagggcgcg gcctccctga
     3361 caaggagaag ggcatgccgg gtaatgggcg agggagcctg ccaggcccga gatggagcca
     3421 ggcaagagcc cagttggctg ggcacctggg tgcccgcccc tgcccagccc accagccgtg
     3481 ccatccccag tccagaggag aaggaaccga aacaaaagtg ggggcagcgg agctcttgaa
     3541 aaggggaagt tgtcctgaga ctggcagaca gaggtcctga taacagaatg aggctggcat
     3601 agccgtgaag gtacagccac cagcctggcc agctgcaggg gaagcaggag agaaaggtgc
     3661 tccaagctgg ctttggactc cagacctacc ctctgtctgc ccagcctccc accccccacc
     3721 tagggaagtg gaaccaggtc atgggcatga cccggtccat gtgctctgcc aggagccctg
     3781 aaaccagcat tcccagcggc aggaagatgg atgatctggg ctccacttcc ggcgctcctc
     3841 ccccactctg gctggaactt gcgtcagtca tatcaaggag gccctcgggt tgggtgccag
     3901 ggagagcaag ctgcttccag ccgcatgaaa tcacctggct acttgcaact aggggacaaa
     3961 atcagcatct ggtttcagag aaccgagagt attttagaac tcgagagttg gagcccaaac
     4021 tcagccgtgc agtggagacc acagaggcac cagggtgctg gagaacaaag caagtatcga
     4081 agcaccggct ccttgcagaa ccaggcgtgc tctcatctcc acccaagttt aatgtgttgt
     4141 acagtcagta atacccaccc ccatctatgc agaaatattg cctaggacta ccctcaccct
     4201 caatcttcct cataattaag ttcaagaaca gaatgagacg gtagtccagc tacagaacag
     4261 gaggcagtgg gcagaagagt aggagcacag actttggagt cagacctgga atcgacacca
     4321 ttcactagtc atgggactgt ggacaagttt ttgaaccaca ctgaggatca gtttcttctc
     4381 ctgccaaaaa gggaatacta cctactccgc aagactgttg tgagaattca agagcacagc
     4441 ttggtgttca aattttattt ccttctcttc cctagagcag cacatgatgt tatgtccagg
     4501 aggcgtaaaa agtagaaggg tttatctaga gtcctgaaga attggtaggg aaccggagag
     4561 atgcagattc ttctttctcc tggttatggt atcagaggaa atacagacat attttcttag
     4621 cttcaaacaa ccaaaaaaga tggtgcaagt aggagatgag aaatctaatt tgaacaccat
     4681 ttgcaaacct aattttcagg cagaatttga aaacaacaca aaacaaaact ccattctttt
     4741 attagaggat tatctactta gtacaattat aagacactaa tctttttgtg tcacagtaga
     4801 gaataaataa gattggcaat taacggggtc atatttgaat gtcctgactg ctcacgtatg
     4861 gctgggaagg cggagcccgt gatctacgtg actaggacac atggaagtgt tgccctggct
     4921 caggtgaaac ccacctttgt gtagtgtcta gagcctcaca ggcagaaagg gtgcttgttt
     4981 cctgatgacg tgagaaaata tgggaaaatg ctttgcacac tgtgaaatag tttacaaagc
     5041 agggcaatac taatgtacat attaacccag tttagtaaca gctttggcta ttttatttcg
     5101 tcatatatat aataatctgt agggactggt tatggaatta agtaacttag aattcatgag
     5161 ttttgtattg cgattgtctg tgtaaattac cagctttgac tttcgtgttc tttgagcatc
     5221 actttgtaac tcttctctgt gcctttctaa tggatccata tatcatgtcc cgtcacaagt
     5281 ggaactgcaa gaagacacct ctgctcgggg cagaggctgg gtcttccgat cgcatctccc
     5341 ttctttcttc agtgagatcc tcttcttctg gaagctggtt tcacatggtg gcttagattt
     5401 ttccatcttt gtatctagca ccatttgaaa tcagtgtttt aggagtaaga attgcagcac
     5461 agcaaaaggc caaccgcaga ggagctgctg ctcgtgggat cagcttccct ccttctgcca
     5521 cctgagccgg ttcaagaaaa ggaagaactt gagaatcaaa gtacactctt gagtgtgttg
     5581 ggttgtggaa ggggacagtg cagggatggg gtcgtgttca atagaaactc agaggcttga
     5641 gcagagccag aggttgtgat tgtctttctg ttgacaggga gcggcaaccc ctagcagtag
     5701 cctgttggta aggcctttga gcacacgctt gggcaatgcc gggttgggta cttgattgca
     5761 ataggcaagg ggaggggtgt ggaccagaag gactatctca tcacatcagc actgtccacc
     5821 tgctcctaga tgccgtgaaa cattcagctg cagttgccga gcagctgaaa tcagacttgc
     5881 cacctgcact gtcaaggtgc cggaccccac cgagcaccac tggacccatc tcttacacag
     5941 gctgaccgat ttctcctggt gttcagagtc tgtttttgtc tagcaccatt tgaaatcggt
     6001 tatgatgtag ggggaaaagc agcagcctcg aggcctcatg ccaagtctgg tcagcaacag
     6061 cctggggctt cctggaagat ggatgcgcag agagaggggg aggaaggtta tgctttttcc
     6121 tgctagcttc tttaactaca tctacaatac tttatgcacg ggtaatagat cagttaatgg
     6181 atttttcaga agcaaatcac taaaatttat ctgatgtcct cggtttgccg aaatgtggta
     6241 gtgatgtaaa ctataaattg gttgctgttg aattatcttt cagtcatgca tcctgacctt
     6301 aataaatgct ttactgtaca caatt
//
LOCUS       XR_004351869            5298 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760690
            (LOC116760690), transcript variant X50, misc_RNA.
ACCESSION   XR_004351869
VERSION     XR_004351869.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5298
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5298
                     /gene="LOC116760690"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116760690"
     misc_RNA        1..5298
                     /gene="LOC116760690"
                     /product="uncharacterized LOC116760690, transcript variant
                     X50"
                     /db_xref="GeneID:116760690"
ORIGIN      
        1 cgaaaggagg gagcagacga ccccgaatag caaaggagac ggaagctaag cacacccaga
       61 gctgctttta gctggtaatg gagatttgca ttgacgtccc aggctgtcca gagctgagcc
      121 cattatggga aggacctgcc ttctggaagc tgctgctccc cggtgcttgg aaaggtacca
      181 catccgtctg gttcacggcg gttatttcat ttattcctca cctcaaccct gcgaggagag
      241 tcccatggcc ggttcaccca agacaatggg gattttttgt agctgaaatt gatggactaa
      301 caaacttcag ttttcctggt ctccttcctc tcgaaacagg aggcagagga gcttttgcat
      361 caggaaaaca ccatggaaac gccatgagca ttggtggtgg cggagtgagg gttaaacagt
      421 gagccttcct gggatccttt tgatgccagt gtgtcgggag cctggagatg gagcgctcag
      481 ccgagtggcc aggacgttct gtcaacatga aagcagcaaa aacagtttgt cggggctcag
      541 cgctgacccc gggctggtgt cattttcagg aagggcttgg cacaagaaag accaccgcca
      601 ggcacgggat tgggggtgac gtcggataac tcagtaggcc cctatagacc cttgaatttt
      661 agaatctgaa aagaaaatca gctgtttgtc ttttattaga tgagcttggc aaacaggatc
      721 acttcttgaa ctcctctcac tggtccccaa caagagacat cttcccaggt tcagaaaacc
      781 ctttgggatt tctcggttgt ggcttattgc cttggatgga gggcaggtcc cttctagggg
      841 gcaggggtgg gcctggcagt cctagtgccc gttatgggga tatggagtcg taggtttcct
      901 ctgctggcat cacgtgaaga cggtggatcc acatcacagg ccttgagctg aagaccagct
      961 cttgggcagc ccacttcagc ctctcctttc cttattatct caaatcaaag tcttatcttc
     1021 tccccttcat cttcctcatt tctttcttag gcgcagtagt gggcctgaag tccttgacct
     1081 ttgcgtctgt gtgtgtgtca tcatggcggc tcagggttct agacttttct tgaatctgca
     1141 gcattgcgct ttgtgcgcgt gacgcccccc cccccccccg ctccgccccg cccacccggc
     1201 cccgccccac caggccttct tcggagcaag agagaacatg ggcctccatc gccactgaac
     1261 ctcagccaag ccgtcatccc cagcatctgg cctcccttct ctcctccccc gctttcggcc
     1321 agtgtctggg gtggaggagc aaacaacttg tgggaggaga tggagggaca gcctggcctg
     1381 gagctctctg cctcctttcc tcgtgtgcca tttttcagcc tcacgcttcc tgtggatgga
     1441 tgatgccagc actgacattt gtcgccgagc gcctcctctc cccaaggact tccccgcgtg
     1501 actcttttgg ggtctggaaa gagtggctct ggggccttgg gagccagagg ggacaggggg
     1561 acctggccca ggtcacagca gactgtgaga cgggcgaggg gtgggagctg gccgaaccca
     1621 cccaagcgca aaggcagccc cggccccttt gcgtcatgtc tttttcagcc tgaggagaga
     1681 gcaacttgac ctaaaaaaat tgtatatatg tgggtgttgg atcctttgtg tctctttgtc
     1741 cagaagctgt gcatgtgatg agagcccagg tctctgtact gtacagagaa ctgttgtcct
     1801 tcaggtttgt tttcagaaag atgtgatgga tgggccgtcc ttgatgagac cgcgtgcccg
     1861 ctgggactgg ccttcctcca ggatgctggg cccggcgtgg tgtttcttct gtcagtggac
     1921 gagaactcag aggagttcag ctccatgagt aggtgacaaa ctcctggaga ctcagctgac
     1981 gatggtgccg gtgtgcagaa gacagttgtc atcctgtggg ataagcgtgt gcccgtttgc
     2041 atttatttgg aacaaaaaaa ggagctgcct ggcagcctgg ctctctgcaa ggtgctgttg
     2101 agcccctggt ttgtgtggtt ctgtgaccac aagtgctgat ggatgtggcg ccatcccagt
     2161 cttgtcggtg aaccatcacc agcctgctta ttggaaacca ggcgcagcaa ggaagctagg
     2221 attcaacgcc ctccttccct gcctcccagc ccgcctccaa aagaatttaa tctgctggac
     2281 aacaaacaat actgttataa aactttgaaa acaagagggc gcggcctccc tgacaaggag
     2341 aagggcatgc cgggtaatgg gcgagggagc ctgccaggcc cgagatggag ccaggcaaga
     2401 gcccagttgg ctgggcacct gggtgcccgc ccctgcccag cccaccagcc gtgccatccc
     2461 cagtccagag gagaaggaac cgaaacaaaa gtgggggcag cggagctctt gaaaagggga
     2521 agttgtcctg agactggcag acagaggtcc tgataacaga atgaggctgg catagccgtg
     2581 aaggtacagc caccagcctg gccagctgca ggggaagcag gagagaaagg tgctccaagc
     2641 tggctttgga ctccagacct accctctgtc tgcccagcct cccacccccc acctagggaa
     2701 gtggaaccag gtcatgggca tgacccggtc catgtgctct gccaggagcc ctgaaaccag
     2761 cattcccagc ggcaggaaga tggatgatct gggctccact tccggcgctc ctcccccact
     2821 ctggctggaa cttgcgtcag tcatatcaag gaggccctcg ggttgggtgc cagggagagc
     2881 aagctgcttc cagccgcatg aaatcacctg gctacttgca actaggggac aaaatcagca
     2941 tctggtttca gagaaccgag agtattttag aactcgagag ttggagccca aactcagccg
     3001 tgcagtggag accacagagg caccagggtg ctggagaaca aagcaagtat cgaagcaccg
     3061 gctccttgca gaaccaggcg tgctctcatc tccacccaag tttaatgtgt tgtacagtca
     3121 gtaataccca cccccatcta tgcagaaata ttgcctagga ctaccctcac cctcaatctt
     3181 cctcataatt aagttcaaga acagaatgag acggtagtcc agctacagaa caggaggcag
     3241 tgggcagaag agtaggagca cagactttgg agtcagacct ggaatcgaca ccattcacta
     3301 gtcatgggac tgtggacaag tttttgaacc acactgagga tcagtttctt ctcctgccaa
     3361 aaagggaata ctacctactc cgcaagactg ttgtgagaat tcaagagcac agcttggtgt
     3421 tcaaatttta tttccttctc ttccctagag cagcacatga tgttatgtcc aggaggcgta
     3481 aaaagtagaa gggtttatct agagtcctga agaattggta gggaaccgga gagatgcaga
     3541 ttcttctttc tcctggttat ggtatcagag gaaatacaga catattttct tagcttcaaa
     3601 caaccaaaaa agatggtgca agtaggagat gagaaatcta atttgaacac catttgcaaa
     3661 cctaattttc aggcagaatt tgaaaacaac acaaaacaaa actccattct tttattagag
     3721 gattatctac ttagtacaat tataagacac taatcttttt gtgtcacagt agagaataaa
     3781 taagattggc aattaacggg gtcatatttg aatgtcctga ctgctcacgt atggctggga
     3841 aggcggagcc cgtgatctac gtgactagga cacatggaag tgttgccctg gctcaggtga
     3901 aacccacctt tgtgtagtgt ctagagcctc acaggcagaa agggtgcttg tttcctgatg
     3961 acgtgagaaa atatgggaaa atgctttgca cactgtgaaa tagtttacaa agcagggcaa
     4021 tactaatgta catattaacc cagtttagta acagctttgg ctattttatt tcgtcatata
     4081 tataataatc tgtagggact ggttatggaa ttaagtaact tagaattcat gagttttgta
     4141 ttgcgattgt ctgtgtaaat taccagcttt gactttcgtg ttctttgagc atcactttgt
     4201 aactcttctc tgtgcctttc taatggatcc atatatcatg tcccgtcaca agtggaactg
     4261 caagaagaca cctctgctcg gggcagaggc tgggtcttcc gatcgcatct cccttctttc
     4321 ttcagtgaga tcctcttctt ctggaagctg gtttcacatg gtggcttaga tttttccatc
     4381 tttgtatcta gcaccatttg aaatcagtgt tttaggagta agaattgcag cacagcaaaa
     4441 ggccaaccgc agaggagctg ctgctcgtgg gatcagcttc cctccttctg ccacctgagc
     4501 cggttcaaga aaaggaagaa cttgagaatc aaagtacact cttgagtgtg ttgggttgtg
     4561 gaaggggaca gtgcagggat ggggtcgtgt tcaatagaaa ctcagaggct tgagcagagc
     4621 cagaggttgt gattgtcttt ctgttgacag ggagcggcaa cccctagcag tagcctgttg
     4681 gtaaggcctt tgagcacacg cttgggcaat gccgggttgg gtacttgatt gcaataggca
     4741 aggggagggg tgtggaccag aaggactatc tcatcacatc agcactgtcc acctgctcct
     4801 agatgccgtg aaacattcag ctgcagttgc cgagcagctg aaatcagact tgccacctgc
     4861 actgtcaagg tgccggaccc caccgagcac cactggaccc atctcttaca caggctgacc
     4921 gatttctcct ggtgttcaga gtctgttttt gtctagcacc atttgaaatc ggttatgatg
     4981 tagggggaaa agcagcagcc tcgaggcctc atgccaagtc tggtcagcaa cagcctgggg
     5041 cttcctggaa gatggatgcg cagagagagg gggaggaagg ttatgctttt tcctgctagc
     5101 ttctttaact acatctacaa tactttatgc acgggtaata gatcagttaa tggatttttc
     5161 agaagcaaat cactaaaatt tatctgatgt cctcggtttg ccgaaatgtg gtagtgatgt
     5221 aaactataaa ttggttgctg ttgaattatc tttcagtcat gcatcctgac cttaataaat
     5281 gctttactgt acacaatt
//
LOCUS       XM_032646181            1344 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane cofactor protein-like
            (LOC116760784), mRNA.
ACCESSION   XM_032646181
VERSION     XM_032646181.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1344
                     /gene="LOC116760784"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116760784"
     CDS             139..1173
                     /gene="LOC116760784"
                     /codon_start=1
                     /product="membrane cofactor protein-like"
                     /protein_id="XP_032502072.1"
                     /db_xref="GeneID:116760784"
                     /translation="MRLKGVIKHRYYPGDRINYECRTGYFYVWPYLLSSTCEPNGSWS
                     PIEEACLRKSCPNPEIKHGEVYAPNKTFEFESEAHISCNEGYYLRGKNILTCNLIGQN
                     VHWSDKIPHCEKIFCGRPPEIKHGKHTNSYRNIFEYNELVTYSCNPSNGSDEYSLVGE
                     RQLICSGPGKWSSAAPLCKVVKCERPVLEHGIIVSGSREKFSYQAVVIFECLQGFYLN
                     GSNLVFCGGNNTWEPEMPKCIKGYKPTHPTKTPLAKYPGYPNPSDEILSLDAFEELDT
                     GIIALIILTAIVAVLVVCTCLYRCLHSERKEEKAMKKKEEKDMKKKEKKEKEKEKKEN
                     KKKEKEKRRR"
     misc_feature    169..858
                     /gene="LOC116760784"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 gcaacaatac agatgaaaac ttgaaagaag cagttatcca tctgcatccc aaagaaggca
       61 gtggtgtcca tcctcatact ctgcaaacaa atcaggaaaa tatcaggtcc ctgtattgat
      121 ccaccagtat tggagagtat gaggctcaag ggtgtcatta aacaccgtta ttatcctggg
      181 gacagaataa actatgagtg tcgcacagga tacttttatg tgtggcctta tctcctctca
      241 tctacttgtg agcctaatgg ctcatggagc cctattgaag aagcatgttt aagaaaatca
      301 tgtccaaatc cagaaataaa gcatggtgaa gtatatgccc caaataaaac ctttgagttt
      361 gaatcagaag ctcacatttc ttgtaatgag ggttattact taagaggaaa aaacattcta
      421 acttgtaacc ttattggaca gaatgtgcat tggagtgata agataccaca ttgtgaaaag
      481 attttttgtg gacgacctcc agaaataaaa catggaaaac acaccaatag ctacaggaat
      541 atatttgaat ataatgaatt agtaacttat agttgtaatc cttcaaatgg atcagatgaa
      601 tattcgcttg ttggagagag gcagcttatt tgttctggac ctggcaaatg gagtagtgct
      661 gctcctctgt gtaaagtggt caaatgtgaa cgtccagtac tcgaacatgg aataattgta
      721 tcaggaagta gagaaaaatt ttcctaccaa gcagtggtga tatttgaatg cctccagggt
      781 ttttacctta atggcagcaa cctagtgttc tgtggtggta ataatacttg ggagcctgag
      841 atgccaaagt gtattaaagg ttacaagccc actcatccaa ccaagactcc acttgcaaaa
      901 tatccaggat atcccaatcc cagtgatgaa atactatcac ttgatgcctt tgaggaatta
      961 gatacaggaa tcattgctct gattattctt actgcaattg ttgctgtttt agtagtttgt
     1021 acctgcttat acagatgtct tcacagtgaa aggaaagagg agaaggctat gaaaaagaag
     1081 gaagaaaagg atatgaaaaa gaaggagaag aaagagaagg aaaaggagaa aaaggaaaac
     1141 aagaagaagg agaaggagaa gagaagaaga tgaaagggaa aaaggaagtt ggtgctggac
     1201 ccaccactca ccagaaaaaa acaaccagtc gattagtgca gaagcactaa ttatttttga
     1261 caaacccatg tgtcagttta tcttttgatt ctattaatat gttaagatct acagtaaatt
     1321 catacagcaa ctatggaaaa cagt
//
LOCUS       XR_004351870             831 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760792
            (LOC116760792), ncRNA.
ACCESSION   XR_004351870
VERSION     XR_004351870.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..831
                     /gene="LOC116760792"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116760792"
     ncRNA           1..831
                     /ncRNA_class="lncRNA"
                     /gene="LOC116760792"
                     /product="uncharacterized LOC116760792"
                     /db_xref="GeneID:116760792"
ORIGIN      
        1 ggcagcaaaa cttctgtgag tggtcttctt gctgaacgca tatgagaaac ctcttaggga
       61 ctcccagaac ttagggactc ccagaactaa tcaaggggga atttgcagga gagtaaacgc
      121 ctgcatacac agggcaacca aagaggccat ctggcttcca cacctggctt tcaattgcct
      181 gtgactcttc atctgatctt catctccatg cagagcacca gtggcgctta gtaataacca
      241 tccgacaata tcatccttcc ctccacacac tgcagacacc tggagtatct gcacagatga
      301 tcgtttaaca gggaagaaca tggtagttac cacaacgtga cgagatccct ggcctgtgta
      361 tcttctcaaa acctcaagtc tggtttagcc aagagctaga gatgaccagg ggacagtggt
      421 cagcctggga tggctctgcc acacctggaa tcaccgctga gtgaagggcc tgtggagacc
      481 acaacactct gagaagtcca cagcaattcc aggctgtaac gcaagggcag ggaatgcatc
      541 ctcttcatct ctgtaactca agccttacat gacagcagcc cggcctccca agagcctttg
      601 atggtaaagg cagccgatgg tgcggagcat gaattcagca gcatcacaca caccttccgt
      661 gattctgccc agatcgcctt gccttgacct gatcccatca agaagcctca ctgaaagctg
      721 agtgacctga gtacaaaggc ttcagatctt cctacctcac ggccggccca gccctccttc
      781 ctgttgtcca gcacagcatc cggcaaaggc cattaccctt atttaagggc a
//
LOCUS       XM_032646216            5417 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus F-box protein 28 (FBXO28), mRNA.
ACCESSION   XM_032646216
VERSION     XM_032646216.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5417
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5417
                     /gene="FBXO28"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 11 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760796"
     CDS             44..1150
                     /gene="FBXO28"
                     /codon_start=1
                     /product="F-box only protein 28"
                     /protein_id="XP_032502107.1"
                     /db_xref="GeneID:116760796"
                     /translation="MAAASEERMAEEGGGGHGDGGSPSAIGSTQRLPPPPPPQAPQPG
                     SQAPPPPALAPDQLPQNNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRML
                     NQGFLKVERYHNLCQKQVKAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKY
                     VDSNLCCFIPGKVIDEIYRVLRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPI
                     LKRKLPGSDVSGRLMGSPPVPGPSAALTTMQLFSKQNPSRQEVTKLQQQVKTNGAGVT
                     VLRREISELRTKVQEQQKQLQDQDQKLLEQTQIIGEQNARLAELERKLREVMESAVGD
                     SSGSGQNEESPRKRKKAAEAIDSLRKSKRLRNRK"
     misc_feature    233..367
                     /gene="FBXO28"
                     /note="F-box domain found in F-box only protein 28
                     (FBXO28) and similar proteins; Region: F-box_FBXO28;
                     cd22100"
                     /db_xref="CDD:438872"
     misc_feature    order(242..244,254..256,263..268,275..280,290..292,
                     296..301,311..319,323..325)
                     /gene="FBXO28"
                     /note="putative Skp1 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:438872"
ORIGIN      
        1 ccctcttccc cttgctctgg gaggaaggaa tcaaaccccc aagatggcgg cggcgtcgga
       61 ggagcggatg gctgaggaag gaggcggtgg ccacggcgac ggcggctccc cttcggccat
      121 cggctctacc cagcgactgc ccccacctcc cccgccccag gccccgcagc cggggtccca
      181 ggctcccccg cccccggcgc tggctccgga ccagctgcct caaaacaaca cgctcgtggc
      241 gctgcccatc gtagccatcg aaaacatcct cagctttatg tcctacgacg aaattagcca
      301 gctccgcctg gtttgtaaaa gaatggactt ggtctgccag agaatgttga atcagggatt
      361 tctaaaagtg gagaggtacc ataatctatg tcagaaacaa gttaaagcac aactcccaag
      421 gagagagtca gaaaggagaa accattcatt agctcgtcat gcagacatcc tcgctgctgt
      481 tgaaacaagg ctgtctctct taaatatgac tttcatgaag tatgtggact ccaatctctg
      541 ttgcttcatc ccaggaaagg tgattgatga gatttatcgt gtgttgagat atgtcaattc
      601 taccagagcc cctcagcgag ctcatgaagt acttcaagag ttaagggata tttcctccat
      661 ggcaatggaa tactttgatg aaaagattgt tccaattcta aagaggaaat taccaggatc
      721 agatgtatct ggaagactca tgggctctcc tccagttcca ggaccttctg cagccctgac
      781 aacaatgcaa ctcttctcta agcaaaaccc ttcaagacag gaggttacca aactccagca
      841 gcaggttaag acaaatggtg ctggggtgac tgttctcagg cgtgaaattt ctgagcttcg
      901 caccaaagtg caagaacagc agaaacagct tcaagaccag gaccagaaac tgctagagca
      961 gacccagatc ataggtgaac agaacgcacg gttggcagag ctggaacgca aactgcgaga
     1021 agtaatggaa agtgcagtgg gagactcctc agggtccggg cagaatgaag agtctcctcg
     1081 gaaacgcaaa aaggccgcag aagccataga ctctcttagg aaatctaaac gtctccggaa
     1141 tagaaagtaa accagaatgt gcttctagct ccagaggaag cgctgacttc gtagcttgag
     1201 cagttctgca tatcaggaca ctgtgagcaa catggtgtcc cttagctcta ggctttcaga
     1261 acacaacgta aacttgaact ctcatggttg ggacagtctt ttcccgcttc tcctcgttga
     1321 actgatgcgc agaatccttt tattttgcaa tagatttgta ctaaccagac ctatcctatc
     1381 atgttttgag aagttaactt tatttctgtg cagataatgt ttaaagcaag tttatctgtt
     1441 tctgcatata tgcacattac ataaggatct taaaccagtc ttgacagact agaagttaag
     1501 tttaatacat aaaatgtcct gttcacttga aagaaaagac ctacttttta aatggacagt
     1561 atcttgtttt taaaaaaaaa gttgactttt tgttataagt gacctttgtc tggaatgtct
     1621 gaaaagtagt aaatgctttt tggtattgaa gtaatgggta actaaaacgg acttccatag
     1681 tattggctgt agaaggggcc tctacagtat tgactatata tttttataaa ctactggcaa
     1741 gggacttacc cagttgttat atacatgttt tcggttcact tttggggcca tgtcctacat
     1801 ttgcatggat ggatgcatgc attgcctagt caactcactt aaaaagctct tgcactggta
     1861 ttgatcttga acctctacac ttctccactt tttagagcag cgtcttagtt catttaagtg
     1921 cttaacatct tccaccacaa cagcttgcct ctgggggcgg ggtggtattt gtatgtccat
     1981 ttgtcctcca gttttacaag aataagagag tattagagcc cactgcttta tctgttctct
     2041 gcagcgttca ggtacactgg ctaaggcaga accccaaatt ctttacattg atgtcagact
     2101 tctggcaact agtactcttc cttactcact gctgtgtgtg ctcattgatc aaatgtggtc
     2161 atgaccagtg gtgtgagtag gaaacccaac ctgtgggatg cagttttgcc attgaaagaa
     2221 agttcactga agaaaattat actatgaaaa agcattttga tcgtttcatt tctggggaat
     2281 gacctgaggg aagcttttta atattaattt caagctttcc ttatcctgca actttaaaca
     2341 aaagctttaa tttcgtttgc actcctgttt tgagcttgta actggaaaag catgtcttgc
     2401 actgttcaac cttctaagtg gtcactttaa caacctccaa attgtgtaca gtggttattt
     2461 tccccacttg tttatttttg aaacagtcaa ctattactgt cctagtttta ttttaatgta
     2521 ctaaattatg tagtcattat ttgcctgtta agttctttta aacgactgtt gccttgggct
     2581 tcagttattt aaggtaaact taggtgtagt atagaatact atccctttcc aggtgggagt
     2641 ttaacacctg tataaaacct aaggttttgg taagtacctt agttgaataa aagcacaagg
     2701 tcactacctt tttttatctg tccaacatga cttggttatg catccttgag attaacctca
     2761 ccaaatgaaa cgttttctta atcaattttt aacattgtcc ttacataata ttgtccttag
     2821 attttgatca attctttgtc taactttgaa actccattta caatgtagta tgttttcaat
     2881 gaaaaaccat aaaataacat ccaagtgttt tcatggtttg ttgggaagta attttaaaat
     2941 aaacaatttc caaaaaacat ttgtcagcca aggtcatcca taaaagtccc tgtctggaac
     3001 tcattttctc agcaggtctc atttgtttaa tcataggatt tagccatatt gtcacaactt
     3061 cggaggaggc ctattggaat actcatggcc tttaatagtc tgctttcctg gcaataggaa
     3121 gacttttaag taacagagta catgtttaca ggcttacaaa gggatataac ctcagatgat
     3181 ctttttaata gttgttaatg aattaaagtt ccctgggtct ctttttaaac tacatctgga
     3241 caccctaaat gtatctacag tctcagttaa catgagtatt tggcttccat aataagcact
     3301 cactattaaa agacagattt tctgtttcaa aatccaaatt tctacagtat acacttgtag
     3361 tcatctgccc ataaggttaa tgagttgctc ttgttaatgc atgaatgtgg cataacagta
     3421 ggagataaag cactacagtt tgttttaagt cttaaatctt aactagctaa aacatgttag
     3481 gatgttgcct tggcccattt gatagctgtt atacttgcct ttgggtagta taatggtatt
     3541 taagtttcaa cagatcacaa aatatttcct tcacctaaaa ctgccatatg ttacaggaaa
     3601 attgtaaatt agcctcccaa gagagaaacc atcctgccct gggttatagg tcagtaattt
     3661 aaatgctgta tgttaatatt gtgttgtcct aggacatttt atgaagtatt cctgtcatct
     3721 tccttggctg tctttcagag gagacttctc taataagtcg tcccactcac gaattgatta
     3781 tggtgcaata ctacaaacag gtaccatgtg gaagggccta tggaagaaat ggagaggact
     3841 gcctcctcgc ccccagcgtg attctcagct tatccatctc ccatgtggac ttggcttggt
     3901 tttcacatat tctgaattat gtattatttt agaacatgag gatacagaac ctggtttttg
     3961 tttgtttgtt tgttttgagc tcctcttgat gtacagagcc tggagataat ggggcaaaca
     4021 caaatgtaat cagagtaatc atatggtttt aaaaacttgg ggtgccatca ggtctaaagc
     4081 cactggcttt ggaagcaact tttttttttg taaaacgtgt ttttggagta ctgaacttta
     4141 caggggcttg ccttaatctc tatttagtag tttcaaatgt aggcgctatt attctacttg
     4201 ttaaaatgtt aaaatattct atgtagcccc taaggtgggt agaacagagt ataagtaatg
     4261 cctaaataaa taagctaaaa ggtgtcacta cagctggatt tttgagcgaa aatggacata
     4321 ggctatgtgt aataaaaata atggcacctt aagattgcac tattttatgc attattttat
     4381 atgccatttc atagcctgca ctttaatctc caaagaaaca atgtatgatg tcccagttcc
     4441 ttattactaa caaacttttt cctaagacag ggcacttaat tctattttac tatactgaaa
     4501 tagtttcttg gaggtagatt cctcttttga gttctctatt tccttagcca taatattttc
     4561 taggatctag gaactcccta tcttgtttat ttccaacagt atataatttt aatttaatgt
     4621 aatgtaaaat ctcatacttg gtgatcagca cattcttata tcctgctcta gcaaaatgag
     4681 tacccatttt ttaacactta ccaaaccttc taaaaataat gatatgctgt aagtaagatt
     4741 tgaagccagg gataaaggca ttctcaaagg aaatgccatg tatgatgcag tctcttggaa
     4801 atggctgttt ctagtgtaaa atacaatttg ataggctatt caatgatttg acttgggatc
     4861 ggaattcctt tagtcctcaa aaagttaatg agtaaagaac tactttaaaa taaaaaactt
     4921 ctatagcctg ccatctgagg tgaattattt tcaagaaatc ctatataatc tacaaaatga
     4981 aattagcaat tagttgactg ctgcctacca tgattttatt tttaatagca atacatttat
     5041 atttgtggta aacactatag gcttaagtaa tggccttttc cagcttccta agaatctttg
     5101 ttaaatttct gaaattgaaa cattaacttg aaaattttcc tgttgtgtct gaagagaacc
     5161 atgggattta gaagcatatt ggtaatctat taggtccatt gccaaagtat acatcaaagc
     5221 tataccaaaa gtttagacgt gtttaaaatt actttatgtg gtaccatgtc tgtttactta
     5281 tggtcatgag caacaataaa ttacaatagt ttaccttctg gaattttaat tgttataacc
     5341 taattcaatt actggaaagt gaaaaacacc tcccgggcac acgacagggt acataaataa
     5401 atgtgttttt accagtg
//
LOCUS       XM_032646230            2892 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing G
            protein-coupled receptor 6 (LGR6), mRNA.
ACCESSION   XM_032646230
VERSION     XM_032646230.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-200               VOSU01000011.1     185261509-185261708
            201-272             VOSU01000011.1     185286412-185286483
            273-344             VOSU01000011.1     185288672-185288743
            345-416             VOSU01000011.1     185292134-185292205
            417-632             VOSU01000011.1     185321543-185321758
            633-704             VOSU01000011.1     185325918-185325989
            705-773             VOSU01000011.1     185340892-185340960
            774-845             VOSU01000011.1     185342753-185342824
            846-917             VOSU01000011.1     185342985-185343056
            918-986             VOSU01000011.1     185343917-185343985
            987-1058            VOSU01000011.1     185344869-185344940
            1059-1124           VOSU01000011.1     185345734-185345799
            1125-1196           VOSU01000011.1     185346693-185346764
            1197-1268           VOSU01000011.1     185347310-185347381
            1269-1394           VOSU01000011.1     185348565-185348690
            1395-1555           VOSU01000011.1     185349458-185349618
            1556-1636           VOSU01000011.1     185352810-185352890
            1637-2106           VOSU01000011.1     185355717-185356186
            2107-2892           VOSU01000011.1     185356188-185356973
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2892
                     /gene="LGR6"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 12 Proteins, and 67% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760803"
     CDS             1..2892
                     /gene="LGR6"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: leucine-rich
                     repeat-containing G-protein coupled receptor 6"
                     /protein_id="XP_032502121.1"
                     /db_xref="GeneID:116760803"
                     /translation="MPSAPGLRALWLCVALCASPCAPQPGPRPACPAPCRCHEDDSML
                     SADCSERGLSAVPGDLDPLTAYLDLSMNNLTELRPGLFLNLRFLEELRLSGNRLSHIP
                     GQAFSGLYSLKILMLQNNLLGGIPAEALWELRSLQSLRLDANLISLVPDRSFEGLSSL
                     RHLWLDDNALTEIPVRALGNLRALQAVTLALNRIEHIPDYAFRNLSSLVVLHLHNNHI
                     QHLGTHSFEGLHNLETLDLNYNQLHEFPVAIRTLGRLQELGFHNNNIKAIPEKAFLGN
                     PLLQTIHFYDNPIQFVGRSAFQYLPRLHTLSLNGATDIQGFPDLKGTTSLEILTLTRA
                     GLRRLPLGMCQQLPRLRVLELSHNQIEGLPSLHGCQKLEEIGLQHNRIWEIRADTFHQ
                     LTSLQALDLSWNAIRSIHPEAFATLRSLVKLDLTDNQLTTLPLAGLGGLVHLKLKGNW
                     ALSQAFPKDSFPRLRALEVPYAYQCCSYGACRGVFKALGRRAPQGSHPDDRDAPKRPL
                     GLPAGAAESHYDVDPDELQLEVEDPRPHPTVQCSPVPGPFKPCEHLFESWGVRLAVWA
                     AVLLSVLCNGLVLLSLSAAGPGPLPPFKFVVGAIAGANTLTGLSCGLLALVDVLTFGR
                     FAEYGARWESGPGCRAVGFLAVLGSEASVLLLTLAAVHCSVAVACVRARGKAPAPGSL
                     RAGALGCLVLAGLAAALPLASVGEYGASPLCLPYAPPDGRPAALGFAAALAMLNASCF
                     LAVAAAYVRLSCELPGAELEAAWDCAAVRHVARLTFADGLLYCPVAFLSLASALGLVP
                     VTPEAVKSVLLLALPLPACLNPLLYLLFSPHFREDLRRLRPCLGVPGPLALAATGQLE
                     PSSCDSTQALVAFSDVELILEASEAGRPPGLETYGFTSVTLAPCQQPGGSRPEGSHFA
                     EPEGTRFGNRPPAVDGGQLRGAEGAVPAGAGRAGAGAFQASGSASASHL"
     misc_feature    88..192
                     /gene="LGR6"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    <196..>867
                     /gene="LGR6"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    196..261
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    262..333
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    334..405
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    406..477
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    469..1302
                     /gene="LGR6"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     Region: PPP1R42; cl42388"
                     /db_xref="CDD:455733"
     misc_feature    478..549
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    550..621
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    622..693
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    694..762
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    763..834
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    835..900
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    976..1020
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1048..1113
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1114..1185
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1186..1251
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1258..1320
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1321..1398
                     /gene="LGR6"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1672..2502
                     /gene="LGR6"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    1678..1755
                     /gene="LGR6"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    1780..1845
                     /gene="LGR6"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    1915..1983
                     /gene="LGR6"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    2050..2100
                     /gene="LGR6"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    2176..2247
                     /gene="LGR6"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    2302..2370
                     /gene="LGR6"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    2404..2481
                     /gene="LGR6"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 atgcccagcg cacccgggct ccgcgccctc tggctctgcg tcgcactctg tgcctcgccg
       61 tgcgcccccc agcctggccc gcggcccgcc tgcccggccc cctgccgctg ccacgaggac
      121 gatagcatgc tgtcggccga ctgctctgag cgcgggctct cggcggtgcc gggggacctg
      181 gaccccctga cggcttacct agacctgagc atgaacaacc tcacggagct ccggcctggc
      241 ctcttcctca acctgcgctt cctggaggag ctgcgtctct ccggaaaccg cctctcgcac
      301 atcccgggac aggcgttctc tggtctctac agcctgaaaa tcctgatgct gcagaacaac
      361 ctgctgggag ggatccctgc cgaggcgctg tgggaactgc ggagcctgca gtctctgcgc
      421 ctcgatgcca acctcatctc cctggtcccg gacaggagct tcgaggggct gtcctccctc
      481 cgccacctgt ggctggacga caatgcactc accgagatcc ccgtcagggc cctcggcaat
      541 ctgcgcgccc tgcaggccgt gaccctggcc ctgaaccgca tagaacacat ccccgactac
      601 gccttccgga acttgtccag cctcgtggtg ctgcatctcc ataacaacca catccagcat
      661 ctggggaccc acagcttcga ggggctgcac aacctggaga ctctagacct gaattacaac
      721 cagctgcacg agttccccgt ggccatccgg acgctgggcc gcctgcagga actgggtttc
      781 cataacaaca acatcaaggc catccccgag aaggcctttc tggggaaccc cctgctgcag
      841 acgatacact tttatgacaa cccgatccag ttcgtgggaa ggtcggcgtt ccagtacctg
      901 cccaggctgc acaccctatc tctgaatggt gccacggaca tccaggggtt cccagatctc
      961 aaaggcacca ccagtctgga gatcctgacc ctgacccgtg cgggcctccg gcggctcccc
     1021 ctggggatgt gccagcagct gcccaggctc cgtgtcctgg agctgtctca caaccagatc
     1081 gaggggctgc ccagcctgca cgggtgtcag aagctggagg aaattggcct ccagcacaac
     1141 cgcatctggg aaatcagagc tgacaccttc caccagctga cctccctgca ggccctggac
     1201 ctgagctgga acgccatccg gtccatccac cctgaggcct ttgcgaccct gcgctccctg
     1261 gtcaagctgg acctgacgga caaccagctg accacactgc ccctggccgg gcttgggggc
     1321 ctggtgcatc tgaagctcaa agggaactgg gctctgtccc aggccttccc caaggacagc
     1381 ttccccagac tgagggccct ggaggtgccc tacgcctacc agtgctgttc ctacggcgcg
     1441 tgccgcggtg tcttcaaggc cttgggccga cgggcgcccc agggctctca ccctgatgac
     1501 cgtgacgctc ccaaaaggcc cctgggcctc cctgccggcg cagccgagag ccactatgat
     1561 gtggacccag acgagctcca gctggaggtg gaggacccca ggccacaccc cactgtccag
     1621 tgcagccctg ttccaggccc cttcaagccc tgcgagcacc tcttcgagag ctggggcgtc
     1681 cgcctggcgg tgtgggccgc cgtgctgctc tccgtgctct gcaacgggct ggtgctgctg
     1741 agcctgtccg cagctgggcc cggccccctg cccccgttca agttcgtggt gggggccatc
     1801 gcaggggcca acaccctgac cggcctctcc tgcggccttc tcgccttggt ggacgtgctg
     1861 accttcggcc ggttcgcgga gtacggcgcc cgctgggagt cgggcccggg ctgccgggct
     1921 gtgggcttcc tggccgtgct gggctccgag gcctccgtgc tgctgctgac cctggccgcc
     1981 gtgcactgca gcgtggccgt ggcctgtgtg cgggcccgtg ggaaggcgcc ggccccgggc
     2041 agcttgcgcg cgggagccct gggctgcctg gtgctggcgg ggctggcggc cgccctgccg
     2101 ctggcctccg tgggtgagta cggggcctcc ccgctctgcc tgccgtacgc cccgcccgat
     2161 ggccggccgg ccgccctggg cttcgccgcg gcgctggcga tgctgaacgc ctcctgcttc
     2221 ctggcagtgg ccgcagccta cgtcaggctg tcctgcgagc tgcccggggc cgagctggag
     2281 gccgcgtggg actgcgccgc cgtgcgccac gtggcccgtc tcaccttcgc tgacgggctc
     2341 ctctactgcc ccgtggcctt cctgagcctg gcgtctgcgc tgggcctcgt ccccgtcacc
     2401 cccgaggctg tcaagtccgt gctgcttctg gcgctgcccc tgcccgcctg cctcaacccc
     2461 ctgctctacc tgctcttcag cccccacttc cgggaggacc tgcggcggct ccggccctgc
     2521 ctgggggtcc cggggcctct cgccctggcg gccaccggcc agctggagcc gagctcctgc
     2581 gactccaccc aggccctggt ggccttctcg gacgtggagc tcatcctgga ggcctccgaa
     2641 gcgggccggc cccccgggct ggagacctac ggcttcacct ccgtgaccct cgccccctgc
     2701 cagcagcccg ggggctctcg gccggagggc agccactttg cggagccaga gggaacccgc
     2761 tttgggaacc ggccacccgc cgtggacggc ggacagctgc ggggggccga gggggccgtg
     2821 ccagcggggg cgggccgggc gggggccggg gccttccagg cgtctggctc tgcctcggcc
     2881 tcacacttgt aa
//
LOCUS       XM_032646244            2031 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein-arginine deiminase type-3-like
            (LOC116760809), mRNA.
ACCESSION   XM_032646244
VERSION     XM_032646244.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                VOSU01000011.1     13058971-13059062
            93-273              VOSU01000011.1     13065855-13066035
            274-340             VOSU01000011.1     13068661-13068727
            341-402             VOSU01000011.1     13070913-13070974
            403-520             VOSU01000011.1     13071942-13072059
            521-646             VOSU01000011.1     13073338-13073463
            647-772             VOSU01000011.1     13075212-13075337
            773-971             VOSU01000011.1     13075385-13075583
            972-1083            VOSU01000011.1     13075687-13075798
            1084-1146           VOSU01000011.1     13077686-13077748
            1147-1191           VOSU01000011.1     13077750-13077794
            1192-1343           VOSU01000011.1     13079532-13079683
            1344-1488           VOSU01000011.1     13081430-13081574
            1489-1591           VOSU01000011.1     13081670-13081772
            1592-1671           VOSU01000011.1     13083594-13083673
            1672-1797           VOSU01000011.1     13085950-13086075
            1798-2031           VOSU01000011.1     13087812-13088045
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2031
                     /gene="LOC116760809"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 21 Proteins"
                     /db_xref="GeneID:116760809"
     CDS             1..2031
                     /gene="LOC116760809"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:661..663,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: protein-arginine deiminase
                     type-3-like"
                     /protein_id="XP_032502135.1"
                     /db_xref="GeneID:116760809"
                     /translation="MSLQRILRVSLEHPTGAVCVAGVETLVDIYGSVPEGTEMFEVYG
                     TPSVDISISPRVERDWEHADTGRWCFDVGLQTIVVMNSASNDLNDSHVQISYHSGQEP
                     LAYALLYLTCVDITLDCDLNCEGRRDRGFVDKRQWVWGSSGYGAILLVNCDRDNLNCD
                     DQDNCDRHVRCLQDLEDMSVMVLRTQGPVALFDDHTLVLHTSSCDAKWAQFFRACGPE
                     GSXEAYRHVLGQNKASYQVPRFHGDEECFFVEGLSFPDAGASGLLKSTVVLEPSRLWT
                     LRPVSFPSGLPLQDFSESPIFTDTVVFCVVPWIMTPSTLPPLEVYVCRVRNNTCFADA
                     VAELARRAGCKLTICPQAENRNDRWIQDGMELGYVQAPHKTFPVVFDSPGNGELQDFP
                     YKRILGPDFGYVTWEPRDNSVSGLDSFGNLEVSPPVVANGKEYPLGRILFGGNLPGSR
                     GRRVTQVVRDFLHAQKVQLTVELFVDWLATGRVDEFLSFVPAPHGKGFRTLLASPSAC
                     FKLFQEKQKQGHGTALLFQGVIGNQQINAISIDQVLSGENLISYNRFVQGCVDWSREV
                     LKRELGLTDGDIIDIPQLFKMERRKVVAFFPDLVNMLVLGKHLGIPKPFGPIICGRCC
                     LGEKVRSLLEPLGLQCTFIDDFTLYHKLHGEVHCGTIVRRQTFSFRWWNMVP"
     misc_feature    1..333
                     /gene="LOC116760809"
                     /note="Protein-arginine deiminase (PAD) N-terminal domain;
                     Region: PAD_N; pfam08526"
                     /db_xref="CDD:462509"
     misc_feature    337..807
                     /gene="LOC116760809"
                     /note="Protein-arginine deiminase (PAD) middle domain;
                     Region: PAD_M; pfam08527"
                     /db_xref="CDD:462510"
     misc_feature    883..2019
                     /gene="LOC116760809"
                     /note="Protein-arginine deiminase (PAD); Region: PAD;
                     pfam03068"
                     /db_xref="CDD:460794"
ORIGIN      
        1 atgtctctgc agaggatcct gcgagtgtcc ctggagcatc ccaccggtgc tgtgtgtgtg
       61 gctggcgtgg agaccctcgt ggacatttat gggtcagtac ctgagggaac agagatgttt
      121 gaggtctacg gaacccccag cgtggacatc tccatctctc ccagagtgga gagggactgg
      181 gaacatgcag acaccgggcg gtggtgcttt gatgtggggt tgcagaccat cgtggtcatg
      241 aactctgcca gcaacgacct caacgacagt cacgttcaga tttcctacca ttccggccaa
      301 gagcctctgg cctatgcgct gctctacctc acctgtgtgg atatcaccct ggattgtgac
      361 ctgaactgtg aaggcagacg ggataggggc tttgtggaca agcggcagtg ggtctgggga
      421 tctagtgggt atggagccat cctgctggtg aactgtgaca gggacaatct gaactgtgat
      481 gaccaggaca actgtgaccg gcacgtgcgc tgcctgcaag acctggaaga tatgtctgtc
      541 atggtcctgc ggacccaagg ccccgttgct cttttcgacg atcacacact tgtcctccac
      601 acctccagct gtgacgccaa gtgggcacag ttcttccgtg cttgtggtcc cgagggctca
      661 tgagaggctt acaggcacgt gctgggccag aacaaggcgt cgtaccaggt gccccgcttc
      721 cacggggatg aggagtgctt cttcgtagag ggcctctcct tccctgacgc tggagcaagc
      781 ggcttgctca agtccacggt ggtccttgaa ccatccaggc tctggaccct gaggccagtt
      841 tcttttccct ctggtcttcc cctgcaggat ttctccgaat cccccatctt cactgacacc
      901 gtggtgttct gtgtggttcc ctggattatg acgcccagca ccctgccgcc cctggaggtg
      961 tacgtgtgcc gtgtgaggaa caacacgtgt tttgcagatg cagtggcgga gctggccagg
     1021 agagccggct gcaagctgac catctgccca caggccgaga accgcaacga ccgctggatc
     1081 caggatggga tggagctggg ctatgttcag gcaccgcaca agaccttccc agtagtcttt
     1141 gactccccgg ggaatggaga actgcaggac ttcccttaca aaagaatcct gggtccagat
     1201 ttcggctacg tgacttggga accacgagac aactctgtga gtggcctgga ttcctttggg
     1261 aacctggagg tcagtccccc agtggtggcc aatgggaaag aataccccct ggggaggatc
     1321 ctctttggtg gcaacctgcc tgggtcaaga ggccgcaggg tcacccaggt ggttcgggac
     1381 ttccttcacg cacagaaggt gcagctcact gtggagcttt ttgtggactg gttggccacg
     1441 ggccgtgtgg atgagtttct gagctttgtc cctgcccccc atgggaaggg cttccggacg
     1501 ctcctggcca gccctagcgc ctgcttcaag ctcttccagg aaaagcagaa gcagggccac
     1561 ggcacggccc tcctgttcca aggggttatt ggcaatcagc agatcaacgc catctccatc
     1621 gaccaggtcc tctccggtga aaacctcatc agttacaata ggtttgtcca gggctgcgtc
     1681 gactggagcc gggaggtgct gaagcgggag ctgggcctga ccgatggtga catcatcgac
     1741 atcccccagc tcttcaagat ggagaggaga aaggtggtgg ccttcttccc tgacttggtg
     1801 aacatgctgg tgctggggaa gcatctgggc atccccaagc ccttcggacc catcatctgc
     1861 ggccgctgct gcctggggga gaaggtgcgg tccctgctgg aaccgctggg cctccaatgc
     1921 accttcattg acgacttcac cctataccac aagctgcacg gggaggtaca ctgcggcacc
     1981 atcgtgcgcc ggcagacctt ctccttcagg tggtggaaca tggtaccctg a
//
LOCUS       XM_032646256            1712 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TMF1 regulated nuclear protein 1 (TRNP1),
            transcript variant X1, mRNA.
ACCESSION   XM_032646256
VERSION     XM_032646256.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1712
                     /gene="TRNP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 95% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760813"
     CDS             81..791
                     /gene="TRNP1"
                     /codon_start=1
                     /product="TMF-regulated nuclear protein 1"
                     /protein_id="XP_032502147.1"
                     /db_xref="GeneID:116760813"
                     /translation="MPGCRISACGPGAQEGSAEPGSPSLPPGERLFSPQPPSPTPTLT
                     PTPAQASPQPEVAQESVGSAEGQELQRWRQGASGGAGRTGPAGGAGGGRGAAAAAAAA
                     AAAGGRALELAEARRRLLEVEGRRRLVSELESRVLQLHCVFLAAELRLAHRAESLGRL
                     GGGVAQAELYLAAHGSRLKKGSRRGRRGRPPALLASALGLGGCVPWGAGRLRRGHCPE
                     PDSPFRRSPPRGPASPQR"
ORIGIN      
        1 gaggcctccg tccttcccag cgtgggggac agccggccag acccgcggac ctactgctgc
       61 ggaccgccgg gggacggggg atgccgggct gccgcatcag cgcctgcggc ccgggggccc
      121 aggaagggtc agcggaaccg gggtccccat cgctgccgcc cggggagcgc ctattctccc
      181 ctcagccccc gtccccaact ccgaccttga ccccgacccc ggctcaggcc tcaccgcagc
      241 ccgaagtggc ccaggagtcg gtgggctcgg ccgaggggca ggagctgcag cgctggcgcc
      301 agggcgctag cgggggcgcg gggcgcaccg ggccggcagg gggcgcgggc ggcggccggg
      361 gcgcggcggc ggcggcggcg gcggcggcgg cggcaggggg ccgcgcgctt gagctggccg
      421 aagcgcggcg gcgactgctg gaggtggagg gtcgccggcg cctggtgtcg gagctggaga
      481 gccgcgtgct gcagctgcac tgcgtcttcc tggcggccga gctgcgcctg gcgcaccgcg
      541 ccgaaagcct gggccgcctg gggggcggcg tggcgcaggc cgagctctat ctggcggcgc
      601 acgggtcacg cctcaagaag ggctcgcgcc gcggccgccg cggccgcccg cccgcgctgc
      661 ttgcctctgc gctcggtctg ggcggctgcg tgccctgggg cgccgggcgc ctgcggcggg
      721 gccactgccc cgagcccgat tcgcccttcc gccggagccc gccccgcggc cccgcctccc
      781 cccagcgctg acctccgcgc cgggaccttt ggccaccccg acaggccatt gcggagatgc
      841 cgaccgacgg attgtggacg ccggctggat ggacggcgtc accgacgcgg atggacagat
      901 tgcccgaccc caggaggaga cagtcggggg gccgagggcc cagtaaagaa ggctaaactg
      961 agctcctccc agctcctcag agcctcgact cgatctgacc cctggattct gcgccttccc
     1021 tgggcacctc cttcaggaag actcctctca ttgaccctac acaagcatgg caccctcctc
     1081 acttcacagg agcccttcac ttcacagtgg caaggggctg gattctgggg aagttgccga
     1141 tactatgaac ttctctatat atgctgcatt tgactttggc ttacactgta caactgaaga
     1201 cgttacgaca agtccttgag acgcagtcag attgtttaag agtgcagcaa agctttccaa
     1261 tgtggaagtg aaaaggatct cttttagaaa tgtcatcatt ctttaacaag tcacagtgca
     1321 gctggggtcc ccattttggt agatgctgtt gcttctcagt ctaacagcac caggaggcct
     1381 gtttgagggg aaacattgct ctgagcaatc cctcagtacc cctcattcac cgtcctcgcc
     1441 ctctccaggt gggtacgtgc ctgcggcccc tcagaaaggt aatgggctgc tggctcccgg
     1501 gggacacacc tgtttctcag gaagaggcgt tggcaacata attctaagtt ttaaatgaaa
     1561 aaagggagca catttattca aatatcctga tggtagaagg aagggggcca cactgactca
     1621 cacagaaccc agaacttgta gagttccgca aaatgaacgc atatagggtc agttccttga
     1681 tgtatacatc caggaagaat aaatctcagt ga
//
LOCUS       XM_032646263            1790 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TMF1 regulated nuclear protein 1 (TRNP1),
            transcript variant X2, mRNA.
ACCESSION   XM_032646263
VERSION     XM_032646263.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1790
                     /gene="TRNP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760813"
     CDS             81..791
                     /gene="TRNP1"
                     /codon_start=1
                     /product="TMF-regulated nuclear protein 1"
                     /protein_id="XP_032502154.1"
                     /db_xref="GeneID:116760813"
                     /translation="MPGCRISACGPGAQEGSAEPGSPSLPPGERLFSPQPPSPTPTLT
                     PTPAQASPQPEVAQESVGSAEGQELQRWRQGASGGAGRTGPAGGAGGGRGAAAAAAAA
                     AAAGGRALELAEARRRLLEVEGRRRLVSELESRVLQLHCVFLAAELRLAHRAESLGRL
                     GGGVAQAELYLAAHGSRLKKGSRRGRRGRPPALLASALGLGGCVPWGAGRLRRGHCPE
                     PDSPFRRSPPRGPASPQR"
ORIGIN      
        1 gaggcctccg tccttcccag cgtgggggac agccggccag acccgcggac ctactgctgc
       61 ggaccgccgg gggacggggg atgccgggct gccgcatcag cgcctgcggc ccgggggccc
      121 aggaagggtc agcggaaccg gggtccccat cgctgccgcc cggggagcgc ctattctccc
      181 ctcagccccc gtccccaact ccgaccttga ccccgacccc ggctcaggcc tcaccgcagc
      241 ccgaagtggc ccaggagtcg gtgggctcgg ccgaggggca ggagctgcag cgctggcgcc
      301 agggcgctag cgggggcgcg gggcgcaccg ggccggcagg gggcgcgggc ggcggccggg
      361 gcgcggcggc ggcggcggcg gcggcggcgg cggcaggggg ccgcgcgctt gagctggccg
      421 aagcgcggcg gcgactgctg gaggtggagg gtcgccggcg cctggtgtcg gagctggaga
      481 gccgcgtgct gcagctgcac tgcgtcttcc tggcggccga gctgcgcctg gcgcaccgcg
      541 ccgaaagcct gggccgcctg gggggcggcg tggcgcaggc cgagctctat ctggcggcgc
      601 acgggtcacg cctcaagaag ggctcgcgcc gcggccgccg cggccgcccg cccgcgctgc
      661 ttgcctctgc gctcggtctg ggcggctgcg tgccctgggg cgccgggcgc ctgcggcggg
      721 gccactgccc cgagcccgat tcgcccttcc gccggagccc gccccgcggc cccgcctccc
      781 cccagcgctg acctccgcgc cgggaccttt ggccaccccg acaggccatt gcggagatgc
      841 cgaccgacgg attgtggacg ccggctggat ggacggcgtc accgacgcgg atggacagat
      901 tgcccgaccc caggaggaga cagtcggggg gccgagggcc cagtaaagaa ggctaaactg
      961 agctgctcag accagtgggg atcccagcca aggacagagg cccaagggag ctcaccccag
     1021 gagcccccac cccttccagg ctcctcccag ctcctcagag cctcgactcg atctgacccc
     1081 tggattctgc gccttccctg ggcacctcct tcaggaagac tcctctcatt gaccctacac
     1141 aagcatggca ccctcctcac ttcacaggag cccttcactt cacagtggca aggggctgga
     1201 ttctggggaa gttgccgata ctatgaactt ctctatatat gctgcatttg actttggctt
     1261 acactgtaca actgaagacg ttacgacaag tccttgagac gcagtcagat tgtttaagag
     1321 tgcagcaaag ctttccaatg tggaagtgaa aaggatctct tttagaaatg tcatcattct
     1381 ttaacaagtc acagtgcagc tggggtcccc attttggtag atgctgttgc ttctcagtct
     1441 aacagcacca ggaggcctgt ttgaggggaa acattgctct gagcaatccc tcagtacccc
     1501 tcattcaccg tcctcgccct ctccaggtgg gtacgtgcct gcggcccctc agaaaggtaa
     1561 tgggctgctg gctcccgggg gacacacctg tttctcagga agaggcgttg gcaacataat
     1621 tctaagtttt aaatgaaaaa agggagcaca tttattcaaa tatcctgatg gtagaaggaa
     1681 gggggccaca ctgactcaca cagaacccag aacttgtaga gttccgcaaa atgaacgcat
     1741 atagggtcag ttccttgatg tatacatcca ggaagaataa atctcagtga
//
LOCUS       XM_032646273            1836 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TMF1 regulated nuclear protein 1 (TRNP1),
            transcript variant X3, mRNA.
ACCESSION   XM_032646273
VERSION     XM_032646273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1836
                     /gene="TRNP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760813"
     CDS             81..791
                     /gene="TRNP1"
                     /codon_start=1
                     /product="TMF-regulated nuclear protein 1"
                     /protein_id="XP_032502164.1"
                     /db_xref="GeneID:116760813"
                     /translation="MPGCRISACGPGAQEGSAEPGSPSLPPGERLFSPQPPSPTPTLT
                     PTPAQASPQPEVAQESVGSAEGQELQRWRQGASGGAGRTGPAGGAGGGRGAAAAAAAA
                     AAAGGRALELAEARRRLLEVEGRRRLVSELESRVLQLHCVFLAAELRLAHRAESLGRL
                     GGGVAQAELYLAAHGSRLKKGSRRGRRGRPPALLASALGLGGCVPWGAGRLRRGHCPE
                     PDSPFRRSPPRGPASPQR"
ORIGIN      
        1 gaggcctccg tccttcccag cgtgggggac agccggccag acccgcggac ctactgctgc
       61 ggaccgccgg gggacggggg atgccgggct gccgcatcag cgcctgcggc ccgggggccc
      121 aggaagggtc agcggaaccg gggtccccat cgctgccgcc cggggagcgc ctattctccc
      181 ctcagccccc gtccccaact ccgaccttga ccccgacccc ggctcaggcc tcaccgcagc
      241 ccgaagtggc ccaggagtcg gtgggctcgg ccgaggggca ggagctgcag cgctggcgcc
      301 agggcgctag cgggggcgcg gggcgcaccg ggccggcagg gggcgcgggc ggcggccggg
      361 gcgcggcggc ggcggcggcg gcggcggcgg cggcaggggg ccgcgcgctt gagctggccg
      421 aagcgcggcg gcgactgctg gaggtggagg gtcgccggcg cctggtgtcg gagctggaga
      481 gccgcgtgct gcagctgcac tgcgtcttcc tggcggccga gctgcgcctg gcgcaccgcg
      541 ccgaaagcct gggccgcctg gggggcggcg tggcgcaggc cgagctctat ctggcggcgc
      601 acgggtcacg cctcaagaag ggctcgcgcc gcggccgccg cggccgcccg cccgcgctgc
      661 ttgcctctgc gctcggtctg ggcggctgcg tgccctgggg cgccgggcgc ctgcggcggg
      721 gccactgccc cgagcccgat tcgcccttcc gccggagccc gccccgcggc cccgcctccc
      781 cccagcgctg acctccgcgc cgggaccttt ggccaccccg acaggccatt gcggagatgc
      841 cgaccgacgg attgtggacg ccggctggat ggacggcgtc accgacgcgg atggacagat
      901 tgcccgaccc caggaggaga cagtcggggg gccgagggcc cagtaaagaa ggctaaactg
      961 agtcctccca gctactctgc aaggtaggag ttagccccat ttccacagct gctcagacca
     1021 gtggggatcc cagccaagga cagaggccca agggagctca ccccaggagc ccccacccct
     1081 tccaggctcc tcccagctcc tcagagcctc gactcgatct gacccctgga ttctgcgcct
     1141 tccctgggca cctccttcag gaagactcct ctcattgacc ctacacaagc atggcaccct
     1201 cctcacttca caggagccct tcacttcaca gtggcaaggg gctggattct ggggaagttg
     1261 ccgatactat gaacttctct atatatgctg catttgactt tggcttacac tgtacaactg
     1321 aagacgttac gacaagtcct tgagacgcag tcagattgtt taagagtgca gcaaagcttt
     1381 ccaatgtgga agtgaaaagg atctctttta gaaatgtcat cattctttaa caagtcacag
     1441 tgcagctggg gtccccattt tggtagatgc tgttgcttct cagtctaaca gcaccaggag
     1501 gcctgtttga ggggaaacat tgctctgagc aatccctcag tacccctcat tcaccgtcct
     1561 cgccctctcc aggtgggtac gtgcctgcgg cccctcagaa aggtaatggg ctgctggctc
     1621 ccgggggaca cacctgtttc tcaggaagag gcgttggcaa cataattcta agttttaaat
     1681 gaaaaaaggg agcacattta ttcaaatatc ctgatggtag aaggaagggg gccacactga
     1741 ctcacacaga acccagaact tgtagagttc cgcaaaatga acgcatatag ggtcagttcc
     1801 ttgatgtata catccaggaa gaataaatct cagtga
//
LOCUS       XM_032646285            4496 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus myomesin 3 (MYOM3), mRNA.
ACCESSION   XM_032646285
VERSION     XM_032646285.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4496
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4496
                     /gene="MYOM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 40%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760828"
     CDS             1..4317
                     /gene="MYOM3"
                     /codon_start=1
                     /product="myomesin-3"
                     /protein_id="XP_032502176.1"
                     /db_xref="GeneID:116760828"
                     /translation="MTLPPSPGGMGEPRAPQAVAMHRLEHRHEEEQKSEQQRTLRMGS
                     STRKRTFHSSEEEYRFSAADYALAAALALTASSETSWEAQLRRQTSTVQLEERGQKRV
                     GFGNEWERTEIAFLRTQWLLRQRRDRKALRWRTEKKVREAKELRDLCSGRGPWFWIPL
                     RSHAVWEHTTVLLTCTVQASPPPQVTWYKNDMRIDLRLFPAGKYRITNNYGLLTLEIR
                     RCTIEDAATYTVMVKNAYGQASSFAKVLVRTYLGKDAGFDSEIFKRLMFGSNVEFTSV
                     LKPVFAREKESFSLSCLFSEDVLDAEQNIQWFRDGRLLKSSSRRQILYADRQASLKVS
                     CAYKEDEGLYTVQVPSPFGLREQSAYVFVRDAAAQKPGAPGSPLNVRCLNVNRDCLIL
                     TWTPPSDTRGNPITSYSIELCQGESEQWVPCHQAPGGTCRCPIQGLVEGQSYRFRVRA
                     VSRAGSSIPSKASEPVAMGDPEEAQKKTEIPFDTGKTITVSTDDSEDFVTIPSPPTNV
                     HASEIHEAYVVLGWEKPRPRGKAPLTYFLEKSVISSGTWEAINSETPVKSPRFALSDL
                     EKGKSYVFRVRAINQYGMSDPSEPSEPIALRGKPATLPPPTQVQAFRDTQTSVSLTWD
                     PVKDSPELLGYYIYSREAGSSEWKTVNNKPIQGSRFTVPGLRTGKEYEFCIRSVSEAG
                     VGESSAATEPVKVKQALATPSVPYDFTLLNCGENYMVIGWKPPKRRGGGKILGYFLDQ
                     HDSEQLDWHSVNQQPIPTQMCKVSDLHEGHFYEFRARAVNWAGVGELSAPSNLFECKK
                     WTMPQPGPPYGVRAFEVRATSLMLMWEPPLYQGAGPVTGYCLSVQEEGSEQWKPVTPD
                     PVSGTHLRISDLQPGKTYVFHVQAVNSAGPGQPSMPTDPILLEDKPDAREIEVGVDDE
                     GFIYMAFEAPEAPDSSEFQWSKDYKGPPDPQRVKVEEEVNKSKIILKEPGLEDLGTYS
                     VVVTDADEEISASHTLTEEELSRLKKLSHEIRNPVIKLISGWNVDILEQGEVRLWLEV
                     EKLSPAAELHLIFNEQEIFSSPNRKINFVREKGLVEVIIQNLTEDDKGSYTAQLQDGK
                     AKNQITLALVDDEFDKLLREADAKRRDWKRKQGPYFEEPLQWKVTEDCQVLLMCKVTN
                     TKKETRFQWFFQKKEFPDGQYDPQTGAGLLCMEELSKEDKGVYRAEVSDERGEDNTIL
                     DLTGEALDAIFTELGRIGALSATPLKIQGTEEGIRLFSRVKYYNVSYMKTTWFHKEKR
                     LESGDRVRAGTTLDEIWLHILDPKDSDKGKYTLEIAAGKEVRQLSADLSGQAFEDALA
                     EHQRLKALAIIEKNRAKVVRGLPDVATIMEDKTLCLTCVISGDPIPEVSWLKNDQPVT
                     FLDRYHMEVKGSEVTITIERVNSEDSGRYGVFVKNKYGSEKGQVTISVFKHGEEDKVL
                     KM"
     misc_feature    460..744
                     /gene="MYOM3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    511..525
                     /gene="MYOM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    550..564
                     /gene="MYOM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    637..651
                     /gene="MYOM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    679..696
                     /gene="MYOM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    718..729
                     /gene="MYOM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    814..1089
                     /gene="MYOM3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    913..924
                     /gene="MYOM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    985..999
                     /gene="MYOM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1027..1044
                     /gene="MYOM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1066..1077
                     /gene="MYOM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1120..1392
                     /gene="MYOM3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1120..1122,1318..1320,1363..1365)
                     /gene="MYOM3"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    <1309..>2127
                     /gene="MYOM3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    order(1366..1371,1375..1380)
                     /gene="MYOM3"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2104..2376
                     /gene="MYOM3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2104..2106,2302..2304,2347..2349)
                     /gene="MYOM3"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(2350..2355,2359..2364)
                     /gene="MYOM3"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2410..2688
                     /gene="MYOM3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2410..2412,2608..2610,2653..2655)
                     /gene="MYOM3"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(2656..2661,2665..2670)
                     /gene="MYOM3"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    3400..3618
                     /gene="MYOM3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    3412..3426
                     /gene="MYOM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    3454..3468
                     /gene="MYOM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    3520..3534
                     /gene="MYOM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    3562..3579
                     /gene="MYOM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    3601..3612
                     /gene="MYOM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    4006..4278
                     /gene="MYOM3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    4060..4074
                     /gene="MYOM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    4099..4113
                     /gene="MYOM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    4174..4188
                     /gene="MYOM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    4216..4233
                     /gene="MYOM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    4255..4266
                     /gene="MYOM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 atgactctgc ctccgagccc aggaggtatg ggggagcccc gggcacccca ggccgtggcg
       61 atgcacaggc tggagcaccg ccacgaggaa gagcagaaat ctgagcagca gcgcaccttg
      121 cggatgggct cctccacgcg gaaacggacc ttccacagca gcgaggaaga gtatcggttc
      181 agcgcggcag actacgccct cgcagcagcc ctggctctga cggcctcctc agagacgtcg
      241 tgggaggccc agctgaggcg ccagaccagc accgtgcagc tggaggagag agggcagaag
      301 cgggtgggct tcggcaatga gtgggagagg acggagatcg ccttcctacg gacccagtgg
      361 ctgctgcgcc agaggcgaga ccggaaggcg ctgagatggc ggacagagaa gaaggtccgg
      421 gaggccaagg agctgaggga tctgtgttcc ggacgcgggc cctggttctg gatcccactg
      481 cgctcccacg ctgtctggga gcacaccacg gtcctactga cctgcaccgt ccaggcctcg
      541 cctccacccc aggtcacctg gtacaaaaat gacatgcgaa ttgatctccg cctcttccct
      601 gccggaaagt accgaatcac caataactat ggactgctga cactggagat taggagatgc
      661 accattgagg acgcagccac ctacacagtg atggtcaaga acgcctacgg ccaggcctcc
      721 tccttcgcca aagtccttgt ccgcacttac ctggggaagg atgctggctt cgattcggag
      781 atctttaaaa gactgatgtt tggctccaac gtggaattca catcggtgct gaaaccagtc
      841 ttcgcccgtg agaaggaatc cttctccctg tcctgcctat tttctgaaga tgtattagac
      901 gccgagcaga acatccagtg gttccgagat gggaggctgc tgaagtcctc cagccgccgg
      961 cagatcctct acgcagaccg ccaggcgtcc ctgaaggtgt cctgcgccta caaggaggac
     1021 gagggtctct acacggtcca ggtgccctcg ccctttgggc tccgggagca gagcgcctat
     1081 gtgtttgtga gagatgctgc agcccagaag cccggggctc caggatcccc cctgaatgtt
     1141 cgatgcctga acgtgaacag ggactgcctc atcctgacgt ggaccccgcc cagcgacacc
     1201 cgtggcaacc ccatcaccag ctactccatt gagctgtgcc agggcgagtc cgaacaatgg
     1261 gtgccctgcc accaggcccc cggcgggacc tgtcggtgcc caatccaggg cctcgtcgaa
     1321 ggccagagct atcggttccg ggtgagagcc gtcagcagag cgggcagcag catcccctcc
     1381 aaggcttcag aaccggttgc catgggcgac cctgaggaag cccagaagaa gacagagatc
     1441 ccctttgata caggaaaaac gatcacggtc agcacagatg attctgaaga cttcgtgacc
     1501 atcccctcgc ccccgaccaa tgtccacgcc agcgagatcc acgaggccta tgtggttctg
     1561 ggctgggaga agccaagacc ccggggcaaa gccccactga cgtacttcct ggagaagtcg
     1621 gtcataagta gtggcacctg ggaggccatc aactcagaaa cgcctgtgaa atccccgaga
     1681 ttcgcccttt cggatctgga gaaagggaag tcgtacgtct tcagagtgcg agcgataaac
     1741 cagtacggca tgagcgatcc ctcggagccc agcgagccca tcgccttgag ggggaagcca
     1801 gccactctcc ctcctccaac tcaagttcaa gctttccgag acacacagac ctctgtctcc
     1861 ctgacctggg atcctgtgaa agacagccca gagctcctgg gttattacat ctactcccgg
     1921 gaggcaggat catctgagtg gaaaacagtt aacaacaaac ccatccaggg cagcaggttt
     1981 acagttcccg ggctgaggac agggaaggag tatgagtttt gtatcaggtc agtcagcgag
     2041 gctggagttg gggagagctc agccgccacc gaacccgtca aggtcaagca ggctctggct
     2101 acaccatctg ttccatatga cttcaccctt ctgaactgtg gggaaaatta tatggtcatt
     2161 gggtggaaac cccctaagcg gcgtggaggg ggcaagatcc tgggctactt cctggaccaa
     2221 catgactcag agcaactgga ctggcactcg gtcaaccagc agcccatccc cacccagatg
     2281 tgcaaggtca gtgaccttca tgaaggccac ttctatgagt tccgtgcccg ggcagtaaac
     2341 tgggctggtg tcggagagct gtcggcaccc agcaacctgt ttgagtgcaa aaagtggacg
     2401 atgcctcagc caggaccccc gtatggcgtg cgggcgtttg aagtgcgggc cacctccctg
     2461 atgctgatgt gggagccccc actgtaccaa ggggccggac cggtcacagg ctactgcttg
     2521 agcgtccagg aggaaggctc tgagcaatgg aaaccggtca ctccagaccc cgtctctggc
     2581 acccacctga ggatttctga cttacagcca ggaaagacct acgtgttcca tgtacaggct
     2641 gtgaattcag cgggcccagg gcagccgtcc atgcccaccg accccatact cctggaggac
     2701 aagccagatg ctcgggagat cgaggttggt gtggatgatg agggctttat ctacatggct
     2761 ttcgaagccc ccgaggcccc tgactcctcg gagtttcagt ggtccaagga ctacaagggc
     2821 ccgccggacc cacagagggt caaggtcgag gaggaagtta acaagtccaa gatcatcctg
     2881 aaagaacctg gcctcgagga tttgggcacc tactcggtgg tggtcaccga tgctgacgaa
     2941 gaaatctcag caagccacac gctgacggag gaagagctga gcaggctgaa gaagctgagc
     3001 catgagatta gaaacccagt gatcaagctg atctccggct ggaacgttga catcctcgag
     3061 caaggagagg tgcggctttg gctggaagta gaaaagttgt ctccagccgc tgagctgcat
     3121 ctaatcttca acgagcagga aatcttcagc tcaccgaacc gcaaaatcaa ttttgtccga
     3181 gagaagggcc tggtggaagt tatcatccaa aacttgactg aggacgacaa agggtcgtat
     3241 actgctcagc tccaagacgg aaaagccaag aaccagatca ccctggctct ggtggatgac
     3301 gagttcgaca aacttttaag ggaggcagat gctaagagaa gagactggaa gagaaagcag
     3361 ggtccgtatt tcgaggagcc tttgcagtgg aaggtcaccg aggactgcca agtgctgctg
     3421 atgtgcaagg tgaccaacac caagaaagaa acccgcttcc agtggttctt ccagaagaaa
     3481 gagttcccag atggtcagta cgacccgcag actggagcag ggcttctctg tatggaagag
     3541 ctttccaaag aggacaaggg cgtttacaga gcagaggttt ccgatgagcg aggggaggac
     3601 aacaccatcc tggacctcac aggtgaagcc ctggatgcca tcttcactga gctgggcagg
     3661 attggtgccc tctctgcgac gccactgaaa atccagggga ccgaggaggg gatccggctc
     3721 ttcagcaggg tcaagtacta caacgtgagc tacatgaaaa ccacctggtt ccacaaagag
     3781 aaacgcctgg agagtggtga tcgggtgagg gctggcacca ccctggatga gatctggctc
     3841 cacatcctgg accccaaaga ctcagacaag ggcaaataca ccctagagat agcggccggg
     3901 aaggaagtcc ggcagctgtc agctgatctc tcggggcaag cttttgagga cgccctggct
     3961 gagcaccaga gactgaaagc cttggccatc atcgagaaga atcgtgccaa agtggtgagg
     4021 ggcctgccgg acgtggccac gatcatggaa gataagaccc tgtgcctgac ctgcgttatc
     4081 tcaggagatc ctatccctga agtctcttgg ctgaagaatg accagcccgt caccttcctt
     4141 gaccgctacc acatggaggt gaaggggtcg gaggtcacca tcaccatcga gagggtcaac
     4201 agtgaggaca gcgggcgcta cggtgtcttc gtcaagaaca agtatggctc cgagaagggc
     4261 caggtcacca tcagcgtgtt caagcacggg gaggaggaca aggtgctgaa gatgtgacgg
     4321 ttggattcag gcacagcctg aggtctggtc tgcatggact acaagggtca accagtggct
     4381 cacagcctgg cacaagccac ggaggcgggg cagggggatt ggacattgcg ggacccggga
     4441 catgggaggg gagtagctac accaaagtgg agaagcatag accttgctgg ggctct
//
LOCUS       XM_032646296            1989 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein-arginine deiminase type-1-like
            (LOC116760834), mRNA.
ACCESSION   XM_032646296
VERSION     XM_032646296.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1989
                     /gene="LOC116760834"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 23% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760834"
     CDS             1..1989
                     /gene="LOC116760834"
                     /codon_start=1
                     /product="protein-arginine deiminase type-1-like"
                     /protein_id="XP_032502187.1"
                     /db_xref="GeneID:116760834"
                     /translation="MAPQRAVQLSLKKPTYAVCVVGIETYVDVYSDVPKGAENFSVSG
                     SPGVEVFTVYSTARVTEPTGKAYWPLNAGVDVIISVDTASKALNDLEVQVSYFGLQKA
                     ALGHSVLYLTGADISLDVDTGRTGKVKRSHGDKKTWRWGPEGYGAVLLVNCDRDSFRS
                     REIDLTSTQLTSLDDLQDMAPMVLSCDGPDELFDSHKLVLNVPFSDSRRMGVFCARGG
                     NSLSDYKQVLGPQHLYYEVERRPGEQKINFYVEGLTFPDADFLGLVSLSVSLVDTKTL
                     PEVPYFTDTVTFRMAPWIMTPNTQCPLELYVCSVLDSNGSNEKFLKDISDLVLKANCK
                     LIVCPWTENQNDRWIQDEMEFGYIEAPHKSFPVVFDSPRDRGLKYFPYKRILGPDFGY
                     VIRETQFAGVSGLDSFGNLDISPPVTVEGKEYPLGRILIGSSFPKSGGRRMARVVRDF
                     LKAQQVQAPVELYSDWLWVGHVDEFLSFVPTSDQKGFRLLLASPSACLKLFQEKKEEG
                     YGEAAQFDGLNHQVKRSINEILEDRLLRSDNLYAQRCIDWNREVLKQELGLIERDIVD
                     IPQLFYLKDSHAEAFFPNMVNMVVLGKYLGIPKPYGPIINGCCCLEEKVRSLLEPLGL
                     CCTFIDDYSSYHELGGEIHCGTNVRRKPFPFKWWHMVP"
     misc_feature    1..336
                     /gene="LOC116760834"
                     /note="Protein-arginine deiminase (PAD) N-terminal domain;
                     Region: PAD_N; pfam08526"
                     /db_xref="CDD:462509"
     misc_feature    343..816
                     /gene="LOC116760834"
                     /note="Protein-arginine deiminase (PAD) middle domain;
                     Region: PAD_M; pfam08527"
                     /db_xref="CDD:462510"
     misc_feature    838..1977
                     /gene="LOC116760834"
                     /note="Protein-arginine deiminase (PAD); Region: PAD;
                     pfam03068"
                     /db_xref="CDD:460794"
ORIGIN      
        1 atggccccac agagagctgt gcagctgtcc ctgaagaagc ccacctacgc tgtgtgtgtg
       61 gtgggaatcg aaacatacgt ggatgtttac agcgatgtgc ccaagggcgc tgagaacttc
      121 agtgtctctg ggagccccgg ggtggaggtc ttcacggtct acagcacagc acgggtgaca
      181 gagcccacag gtaaggccta ctggcccctg aatgccggcg tggacgtgat catatctgtg
      241 gacacagcca gtaaggcttt aaacgatctc gaggtgcaag tctcctactt cgggctgcag
      301 aaggctgccc tgggccacag cgtactctac ctcactggtg ccgacatctc cctcgacgtc
      361 gacacgggcc gcacgggcaa ggtgaagagg agccacggcg acaagaaaac ctggcgctgg
      421 ggccctgagg gctatggggc tgtcctgctg gtgaactgtg accgggatag tttcaggtcc
      481 agggagatcg acctcaccag cacccagctg acatcactgg atgacctgca ggacatggcc
      541 ccaatggtgc tgagctgcga tggccctgat gagctctttg acagccacaa gctggtcttg
      601 aacgtgccgt tttccgattc caggagaatg ggggtcttct gcgctagggg tgggaattct
      661 ctctcagact acaagcaggt gctggggccc cagcatctgt actacgaagt ggagcggcgt
      721 ccgggggaac agaagatcaa cttctacgtg gaggggctca cctttcccga cgctgatttc
      781 ttggggctgg tctctctcag cgtcagcctg gtggacacca agaccctgcc tgaggtgccc
      841 tacttcacag acaccgtgac cttccgcatg gccccctgga tcatgacccc caacacccag
      901 tgccccctgg agctgtatgt gtgcagtgtc ttagactcca atggctcaaa tgagaagttt
      961 ctgaaagaca tatctgacct ggtgttgaaa gccaactgca agctgatcgt ctgcccttgg
     1021 actgagaatc agaatgaccg ctggatccag gacgagatgg agtttggcta catcgaggct
     1081 cctcacaaat ccttcccagt ggtctttgac tccccccgag acagaggcct gaagtatttc
     1141 ccttataaga ggatcctggg tcccgacttc ggatatgtaa tccgggaaac gcagttcgct
     1201 ggtgtttctg gccttgactc cttcggcaac ctggacatca gccctccagt cacagtggag
     1261 ggcaaggagt accccctggg ccgaattctc attggcagca gcttccccaa gtctggcggg
     1321 cggcgaatgg ccagggtggt gcgcgacttc ctgaaggccc agcaggtgca ggcgcctgtg
     1381 gagctctact ctgactggct ctgggtgggc cacgtggacg agttcctgag cttcgtgccc
     1441 acctccgacc aaaagggctt ccggctgctc ctggccagcc ccagcgcttg cctcaaactg
     1501 ttccaagaga agaaggagga gggctacggg gaggcggccc agtttgacgg gttaaatcac
     1561 caggtgaaga gaagcattaa tgagatactg gaagacagac ttctcaggag tgacaacctc
     1621 tatgcacaga gatgcatcga ttggaaccgg gaggtgctga agcaggaact gggcctgatt
     1681 gagcgggaca tcgtggacat cccccagctc ttttacctga aggactccca cgcagaagcc
     1741 ttcttcccca acatggtgaa catggtggtc ttaggcaagt acctgggcat ccccaaaccc
     1801 tacgggccca taatcaacgg ctgctgctgc ttggaggaga aggtacggtc ccttttggag
     1861 cctctgggcc tctgctgtac cttcatcgat gactactcgt cctaccacga gctgggtgga
     1921 gagatccact gcggcaccaa cgtgcgccgg aagccctttc ccttcaagtg gtggcacatg
     1981 gtgccctga
//
LOCUS       XM_032646309            5902 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus AT-hook DNA binding motif containing 1
            (AHDC1), transcript variant X1, mRNA.
ACCESSION   XM_032646309
VERSION     XM_032646309.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5902
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5902
                     /gene="AHDC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760839"
     CDS             704..5488
                     /gene="AHDC1"
                     /codon_start=1
                     /product="AT-hook DNA-binding motif-containing protein 1"
                     /protein_id="XP_032502200.1"
                     /db_xref="GeneID:116760839"
                     /translation="MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPARPP
                     ASPPDKAFAHTFSENPRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPAGD
                     GSSSRRRWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPG
                     DLQYSFFSSPSLANSIRSPEERATPHAKSERSSHPLYEPEPEPRDSPQPGQGHSPGAT
                     AAAAGLPPEPEPDGPDYSELADADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLD
                     PQPRFLDPQALEPLGEALELPPLQPLADPLGLPGLALQALETLPDSLESQLLDPQALD
                     PLPKLLDVPSRRLEPQQPLGPCPLAEPLRLDLCSPHGPPGPEGHPKSALRRTDRPKIL
                     CRRRKAGRGRKADAGPEGRLLPLPVPTGLAAALAEPPPPPPPHTLPGPGPVPELEPES
                     SQTPVVPTRRGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRV
                     STEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPAVVAAEA
                     ATVAAATMAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCA
                     GRCSPPRCWTPSEPESVHQAPDTQSISHFLHRVQGFRRRGGKAGGFGGRGGGHAAKAA
                     RCSFSDFFEGIGKKKKVVAVAAAGVGGPGLAELGHPRKRGRGEVDAVTGKPKRKRRSR
                     KNGTLFPEQVPSGPGFGEAGTEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFAS
                     TGLESGASGRGSYYSTAAPAGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASR
                     PESRKASGTYTGPPSSALPAQRGLATFPSRGAKASPVAVGSSGAGAEPSFQPVLPTRQ
                     TFPPGRAASYGLTPGTSDCRAAETFPKLAPLPSAVARSPTAHPPTNTYPPQYGGYGAG
                     QSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKA
                     SFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASAASAASSSSSSFQPSP
                     ENCRQFAGASQWPFRQGYGGLDWASEAFSQLYTPGFDCHVSEPNVILDISNYTPQKVK
                     RQTAASETFSESSSDSTQLSQPGGGGFRRASSEASSSEGQSSLSSLEKLMMDWNEASS
                     APGYNWNQSVLFQSSAKPGRGRRKKVDLFEASHLGFPSTASASAAGYPSKRSTGPRQP
                     RGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQ
                     SRAFSVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHFPPLAHPP
                     TVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLSHAAAAQAHLS
                     CRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAACLSAP
                     HLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQD
                     TAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL"
     misc_feature    <2468..2614
                     /gene="AHDC1"
                     /note="Domain of unknown function (DUF4683); Region:
                     DUF4683; pfam15735"
                     /db_xref="CDD:464832"
     misc_feature    <3269..3844
                     /gene="AHDC1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tccagctacc accacccaaa gccagcgtct gctttctgtc ctcatttcct tttcccaccc
       61 agctctgaga gcagagaaag gcagagggag cgagagatag agacagtcag agagacagac
      121 agacagccag agagagcagg agggaggagg gcggaggagg aggagcagga ggaggactac
      181 gcggggcgcg ttccctccca gctgccaagc gcccgcgtcg ctgccgcggc cggaagacag
      241 gacggccccc caaagcccct cgcctggctc ggaccaacgg agccggcagc ccagcactcc
      301 gatgggagct tgcctgcctg tctgcccatt ggcctggacc ccagagcctg cccagctgag
      361 tgcgtgcaga gggccccggc tttggggcga ctctcaggcc gccgaagaga ccactctgga
      421 accactggcg aagacaggcc tttcttgctg agctgggcct gtctgcacag cctgctcagg
      481 cgctgtccac gccccgaggc ctgggctcag gccgaagctg ctccacagca cccccagctg
      541 acagccagcg actggcagag cccccaggca cgggggccct ctctctttca gagatctcca
      601 gtgtgacagc ccaggcggca gagccgaggg tcctggtccc ggcttctcgc accctcatgt
      661 cagccccggc cccgcccggc ggcctgcgga ggacaaggtc aggatgcgtg tgaagcccca
      721 gggcctggtg gtgacttcca gtgccgtgtg cagctctcct gactacctcc gggagcccaa
      781 gtactacccc ggcggccccc ccaccccccg gcccttgctt cccgcccggc cccctgccag
      841 cccacccgac aaggccttcg cccacacctt ctctgagaac ccgcgcccac ccccacgccg
      901 ggaccccagc acccggcgcc caccagtcct tgccaagggg gacgacccgc tgcccccgag
      961 ggcggcccgt cctgtctccc aggcccgctg ccccaccccc gcgggagacg gcagcagctc
     1021 ccgacggcgc tgggacaacg ggcgggtgaa cctgcgtcca gtggtccagc tgattgacat
     1081 catgaaggac ctgacccggc tctcccagga ccttcagcac agcggcgtgc acctggactg
     1141 cggtggcctc cggctcagcc gcccacctgc cccgcccccc ggggaccttc agtatagctt
     1201 cttctcctca cccagcctgg ccaacagcat ccgcagccct gaggagcggg ccacccccca
     1261 tgccaagtct gagcggtcca gccaccccct ctatgagcct gagcctgagc ctagggacag
     1321 tccccagccc ggccaaggcc atagtcccgg agccacggcc gcggccgccg gtctgccacc
     1381 agagcccgag ccagacggcc ctgattactc agaactcgct gacgccgaca tcctgagtga
     1441 gctggcctcc ctgacttgcc ccgaggccca gctgctggag gcccaggccc tcgagccacc
     1501 gtcgcctgag ccagagcctc agctcctaga cccccagccc cgcttcctgg acccgcaggc
     1561 actagagccg ctcggggaag ctttggagct gccgcccctg caaccccttg ctgaccctct
     1621 ggggttgccg ggcctggctc tgcaggccct agaaaccctg cccgactccc tggagtcgca
     1681 gctgctcgac cctcaggcac ttgaccccct gcccaagttg cttgacgtcc ctagccgccg
     1741 cctggagccc cagcagcccc tgggaccctg cccgctggct gagcccttgc gcctggacct
     1801 gtgctcaccc catggccctc ctgggcccga gggtcacccc aaatccgcct tgcggcgcac
     1861 cgataggcca aagatcctgt gtcgccgacg gaaagccgga cggggacgca aggcagacgc
     1921 cggccccgag ggccgtctgc tgcccctgcc tgtgcccaca gggctggcgg ctgccctggc
     1981 tgagcccccg cccccgcccc cacctcacac cctgcccggc ccaggcccag tcccagagct
     2041 ggagcccgaa tcctcccaga ccccagtggt ccctacccgc agaggcaagt gccggggcgt
     2101 gcggcgcatg gtggtgaaga tggccaagat ccccgtgtca ctgggcaggc ggaacaagac
     2161 cacgtacaag gtgtcgtctc tgagcagcag cctgagcgtg gagggcaagg agctgggcct
     2221 gcgcgtgtcc acagagccca ccccgctact gaagatgaag aacaatgggc ggaacgtggt
     2281 ggtggtcttc ccacccggcg agatgcccat cattctcaag cgtaagcgcg gccgccctcc
     2341 taagaacctg ctcctgggcc ccggcaagcc caaggagcca gcggtggtgg cggccgaggc
     2401 agccactgtg gcagcagcca ccatggccat gccggaggtg aagaaacggc ggcggcggaa
     2461 gcagaagctg gcgtctcccc agccgtccta cgcagcagat gccaacgaca gcaaggccga
     2521 gtactcagac gtcctcgcca agctggcctt cctgaaccgc cagagccagt gcgctgggcg
     2581 gtgctcaccg ccccgctgct ggacacccag tgagcccgag tcagtgcacc aggcgcccga
     2641 cacacagagc atctcccact tcctgcaccg tgtgcagggc ttccgacggc gaggtggcaa
     2701 ggcaggcggt tttggtggcc ggggtggggg ccacgcggcc aaggcggccc gatgctcctt
     2761 cagcgacttc tttgagggca tcggcaagaa aaagaaggtg gtggccgtgg cagccgccgg
     2821 ggtcgggggc cctggcctcg ctgagttggg gcacccacgc aaacggggcc ggggggaggt
     2881 agacgccgtg actgggaagc ccaaacgcaa gaggcggtcc cggaagaacg ggactctgtt
     2941 cccggaacag gtgcccagtg gcccaggctt tggggaggcg ggcactgagt gggccgggga
     3001 caagggtggt ggctgggccc ctcaccatgg gcacccgggc gggcaagctg gccgaaactg
     3061 cgggttccag gggaccgagg cccgggcctt tgcctccact gggctagaga gcggggcttc
     3121 gggccgtggc agctactaca gcacagccgc acctgcgggc cagacggagc tcagccagga
     3181 gcgccaaaac ctcttcaccg gctattttcg ctcactgctc gactcggatg actcctccga
     3241 cctcttggac tttgccctct cagcctctcg ccctgagtcc cggaaggcat caggcaccta
     3301 cacagggccc cccagcagcg ccctgcccgc ccagcggggc ctggccacct tccccagccg
     3361 gggagccaag gccagcccgg tggcagtggg cagcagcggg gctggggcgg agccctcctt
     3421 ccagcccgtt ctgcccactc gccagacctt cccgccgggc cgggcagcga gctatgggct
     3481 gacccccggc acttcagact gccgggcagc cgagaccttc ccgaagctgg cccctctgcc
     3541 ttctgccgtg gctcgctcac ctaccgcaca cccgcccacc aacacctacc ccccgcagta
     3601 cgggggctac ggggctggac aaagtgtatt cgcacccact aagcccttta cgggccagga
     3661 ctgcgccaac agcaaggact gcagctttgc ctacggcagt ggcaacagcc tccctgcctc
     3721 acccagcagc gcccacagcg ctggctacgc cccaccgcct accggtggcc cctgcctgcc
     3781 accaagcaag gcgtccttct tcaacagctc tgaggggggc cccttctctg gttcggcccc
     3841 cacacccctg cgctgtgaca gccgggccag cacggtctca cccggcggct acatggtacc
     3901 caagggcacc acagcctctg ccgcctctgc cgcgtcctcg tcgtcctcct ccttccagcc
     3961 ctcgcctgag aactgtcggc agtttgcggg ggcttctcag tggcctttcc ggcagggcta
     4021 tgggggcctg gactgggcct cggaggcctt cagtcagctc tacactcccg gtttcgactg
     4081 ccacgtcagc gagcccaacg tgatcctgga catctccaac tacacgccac agaaggtgaa
     4141 gcggcagacg gccgcgtccg agaccttctc cgagtcgtcc tccgacagca cccagctcag
     4201 ccagcccggc ggcggcggtt tccggcgcgc cagcagcgag gcctcgagca gcgagggcca
     4261 gtcgagcctg tccagcctgg agaaactgat gatggactgg aacgaggcgt cgtccgcccc
     4321 cggttacaac tggaaccaga gcgtcctctt ccagagcagc gccaagccgg gccgcggacg
     4381 gcggaagaag gtggacctgt tcgaggcctc gcatctgggc ttcccgtcaa ccgcctcggc
     4441 cagcgccgcg ggctacccat ccaaacggag caccgggccc cggcagcctc ggggtggacg
     4501 gggtggcggg gcctgctcgg ccaagaagga gcggggcggg gcggcggcca aagccaagtt
     4561 catccccaag ccccagccgg tcaacccgct gttccaggac agcccagacc tcggcctgga
     4621 ctactacagc ggggacagca gcatgtcacc actgccctcg cagtcgaggg ccttcagcgt
     4681 gggcgagcga gatccctgtg acttcatggg accctactcc atgaacccgt ccacgccatc
     4741 ggacggcacc ttcggccaag gcttccactg cgactcgccc agcctcggcg cccctgagct
     4801 ggatggcaag catttcccgc cactggccca cccgcccacg gtgtttgatg ctggcctgca
     4861 gaaggcctac tctcccacct gctccccgac cctgggcttc aaggaagagc tgcggccgcc
     4921 acccacgaag ctggctgcct gtgagcccct caagcatggg ctccaggggg ccagcctgag
     4981 ccatgcagct gcagcccagg cccacctgag ctgccgggac ctgccgctgg gccagcccca
     5041 ctacgactcc cccagctgca agggtacggc atattggtac ccgccaggct cagctgcccg
     5101 cagcccgccc tatgaaggca aggtgggttc agggctgctg gctgacttcc tgggcaggac
     5161 ggaggccgcg tgcctcagtg ccccacacct ggctagccca ccggccacac ctaaggccga
     5221 caaggagcca ctggagatgg cccggccgcc cggcccaccc cgtggccccg ctgcagctgc
     5281 tgctggctat ggctgcccac tccttagtga cttaaccctg tcccctgtgc cgagggactc
     5341 gctgctgccc ctgcaggata ccgcctacag gtatccaggc ttcatgccgc aggcgcatcc
     5401 cggcctgggt gggggcccca agagcggctt cctggggccc atggcggaac ctcaccctga
     5461 ggacacattc accgtcacct ccctgtagtg ccaactgaag tgccgactgg acctcgaggt
     5521 tttgttcctg gctttcagaa aaccaacgcc aagacccctc ccagcgtcca catggtcctc
     5581 cggcaggcgc ctgcccctct gcctcccgcc ccacctcccc tgcaccccct gcagccccat
     5641 cgccccaccc cacccctccc tgcccatctc ctccacgcag aagccgaagg tgagcccttt
     5701 ctgcacaaaa ccagcaattg taaatacttt ttaaaaatgt acaaaactta aaaacaaaac
     5761 acagttttag aaaaagacaa aaaaaagaga gagagagaga gagagagaga gaacgcgagc
     5821 gtgtgcaaga ggttgtgagc ggggcctcaa ggtgtccaga gcccctgcaa gtatgcactg
     5881 agaaatttat ctacaggtcg tt
//
LOCUS       XM_032646317            6007 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus AT-hook DNA binding motif containing 1
            (AHDC1), transcript variant X2, mRNA.
ACCESSION   XM_032646317
VERSION     XM_032646317.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6007
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6007
                     /gene="AHDC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760839"
     CDS             809..5593
                     /gene="AHDC1"
                     /codon_start=1
                     /product="AT-hook DNA-binding motif-containing protein 1"
                     /protein_id="XP_032502208.1"
                     /db_xref="GeneID:116760839"
                     /translation="MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPARPP
                     ASPPDKAFAHTFSENPRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPAGD
                     GSSSRRRWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPG
                     DLQYSFFSSPSLANSIRSPEERATPHAKSERSSHPLYEPEPEPRDSPQPGQGHSPGAT
                     AAAAGLPPEPEPDGPDYSELADADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLD
                     PQPRFLDPQALEPLGEALELPPLQPLADPLGLPGLALQALETLPDSLESQLLDPQALD
                     PLPKLLDVPSRRLEPQQPLGPCPLAEPLRLDLCSPHGPPGPEGHPKSALRRTDRPKIL
                     CRRRKAGRGRKADAGPEGRLLPLPVPTGLAAALAEPPPPPPPHTLPGPGPVPELEPES
                     SQTPVVPTRRGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRV
                     STEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPAVVAAEA
                     ATVAAATMAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCA
                     GRCSPPRCWTPSEPESVHQAPDTQSISHFLHRVQGFRRRGGKAGGFGGRGGGHAAKAA
                     RCSFSDFFEGIGKKKKVVAVAAAGVGGPGLAELGHPRKRGRGEVDAVTGKPKRKRRSR
                     KNGTLFPEQVPSGPGFGEAGTEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFAS
                     TGLESGASGRGSYYSTAAPAGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASR
                     PESRKASGTYTGPPSSALPAQRGLATFPSRGAKASPVAVGSSGAGAEPSFQPVLPTRQ
                     TFPPGRAASYGLTPGTSDCRAAETFPKLAPLPSAVARSPTAHPPTNTYPPQYGGYGAG
                     QSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKA
                     SFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASAASAASSSSSSFQPSP
                     ENCRQFAGASQWPFRQGYGGLDWASEAFSQLYTPGFDCHVSEPNVILDISNYTPQKVK
                     RQTAASETFSESSSDSTQLSQPGGGGFRRASSEASSSEGQSSLSSLEKLMMDWNEASS
                     APGYNWNQSVLFQSSAKPGRGRRKKVDLFEASHLGFPSTASASAAGYPSKRSTGPRQP
                     RGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQ
                     SRAFSVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHFPPLAHPP
                     TVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLSHAAAAQAHLS
                     CRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAACLSAP
                     HLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQD
                     TAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL"
     misc_feature    <2573..2719
                     /gene="AHDC1"
                     /note="Domain of unknown function (DUF4683); Region:
                     DUF4683; pfam15735"
                     /db_xref="CDD:464832"
     misc_feature    <3374..3949
                     /gene="AHDC1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tccagctacc accacccaaa gccagcgtct gctttctgtc ctcatttcct tttcccaccc
       61 agctctgaga gcagagaaag gcagagggag cgagagatag agacagtcag agagacagac
      121 agacagccag agagagcagg agggaggagg gcggaggagg aggagcagga ggaggactac
      181 gcggggcgcg ttccctccca gctgccaagc gcccgcgtcg ctgccgcggc cggaagacag
      241 gacggccccc caaagcccct cgcctggctc ggaccaacgg agccggcagc ccagcactcc
      301 gatgggagct tgcctgcctg tctgcccatt ggcctggacc ccagagcctg cccagctgag
      361 tgcgtgcaga gggccccggc tttggggcga ctctcaggcc gccgaagaga ccactctgga
      421 accactggcg aagacaggcc tttcttgctg agctgggcct gtctgcacag cctgctcagg
      481 atcggtatga agaattaaat gaaacgatgc ctggacagct tccagcccag tgcctggcgc
      541 gcagtaggtg ctcactaaac ctgagctgcg gtggtccttt ccaggcgctg tccacgcccc
      601 gaggcctggg ctcaggccga agctgctcca cagcaccccc agctgacagc cagcgactgg
      661 cagagccccc aggcacgggg gccctctctc tttcagagat ctccagtgtg acagcccagg
      721 cggcagagcc gagggtcctg gtcccggctt ctcgcaccct catgtcagcc ccggccccgc
      781 ccggcggcct gcggaggaca aggtcaggat gcgtgtgaag ccccagggcc tggtggtgac
      841 ttccagtgcc gtgtgcagct ctcctgacta cctccgggag cccaagtact accccggcgg
      901 cccccccacc ccccggccct tgcttcccgc ccggccccct gccagcccac ccgacaaggc
      961 cttcgcccac accttctctg agaacccgcg cccaccccca cgccgggacc ccagcacccg
     1021 gcgcccacca gtccttgcca agggggacga cccgctgccc ccgagggcgg cccgtcctgt
     1081 ctcccaggcc cgctgcccca cccccgcggg agacggcagc agctcccgac ggcgctggga
     1141 caacgggcgg gtgaacctgc gtccagtggt ccagctgatt gacatcatga aggacctgac
     1201 ccggctctcc caggaccttc agcacagcgg cgtgcacctg gactgcggtg gcctccggct
     1261 cagccgccca cctgccccgc cccccgggga ccttcagtat agcttcttct cctcacccag
     1321 cctggccaac agcatccgca gccctgagga gcgggccacc ccccatgcca agtctgagcg
     1381 gtccagccac cccctctatg agcctgagcc tgagcctagg gacagtcccc agcccggcca
     1441 aggccatagt cccggagcca cggccgcggc cgccggtctg ccaccagagc ccgagccaga
     1501 cggccctgat tactcagaac tcgctgacgc cgacatcctg agtgagctgg cctccctgac
     1561 ttgccccgag gcccagctgc tggaggccca ggccctcgag ccaccgtcgc ctgagccaga
     1621 gcctcagctc ctagaccccc agccccgctt cctggacccg caggcactag agccgctcgg
     1681 ggaagctttg gagctgccgc ccctgcaacc ccttgctgac cctctggggt tgccgggcct
     1741 ggctctgcag gccctagaaa ccctgcccga ctccctggag tcgcagctgc tcgaccctca
     1801 ggcacttgac cccctgccca agttgcttga cgtccctagc cgccgcctgg agccccagca
     1861 gcccctggga ccctgcccgc tggctgagcc cttgcgcctg gacctgtgct caccccatgg
     1921 ccctcctggg cccgagggtc accccaaatc cgccttgcgg cgcaccgata ggccaaagat
     1981 cctgtgtcgc cgacggaaag ccggacgggg acgcaaggca gacgccggcc ccgagggccg
     2041 tctgctgccc ctgcctgtgc ccacagggct ggcggctgcc ctggctgagc ccccgccccc
     2101 gcccccacct cacaccctgc ccggcccagg cccagtccca gagctggagc ccgaatcctc
     2161 ccagacccca gtggtcccta cccgcagagg caagtgccgg ggcgtgcggc gcatggtggt
     2221 gaagatggcc aagatccccg tgtcactggg caggcggaac aagaccacgt acaaggtgtc
     2281 gtctctgagc agcagcctga gcgtggaggg caaggagctg ggcctgcgcg tgtccacaga
     2341 gcccaccccg ctactgaaga tgaagaacaa tgggcggaac gtggtggtgg tcttcccacc
     2401 cggcgagatg cccatcattc tcaagcgtaa gcgcggccgc cctcctaaga acctgctcct
     2461 gggccccggc aagcccaagg agccagcggt ggtggcggcc gaggcagcca ctgtggcagc
     2521 agccaccatg gccatgccgg aggtgaagaa acggcggcgg cggaagcaga agctggcgtc
     2581 tccccagccg tcctacgcag cagatgccaa cgacagcaag gccgagtact cagacgtcct
     2641 cgccaagctg gccttcctga accgccagag ccagtgcgct gggcggtgct caccgccccg
     2701 ctgctggaca cccagtgagc ccgagtcagt gcaccaggcg cccgacacac agagcatctc
     2761 ccacttcctg caccgtgtgc agggcttccg acggcgaggt ggcaaggcag gcggttttgg
     2821 tggccggggt gggggccacg cggccaaggc ggcccgatgc tccttcagcg acttctttga
     2881 gggcatcggc aagaaaaaga aggtggtggc cgtggcagcc gccggggtcg ggggccctgg
     2941 cctcgctgag ttggggcacc cacgcaaacg gggccggggg gaggtagacg ccgtgactgg
     3001 gaagcccaaa cgcaagaggc ggtcccggaa gaacgggact ctgttcccgg aacaggtgcc
     3061 cagtggccca ggctttgggg aggcgggcac tgagtgggcc ggggacaagg gtggtggctg
     3121 ggcccctcac catgggcacc cgggcgggca agctggccga aactgcgggt tccaggggac
     3181 cgaggcccgg gcctttgcct ccactgggct agagagcggg gcttcgggcc gtggcagcta
     3241 ctacagcaca gccgcacctg cgggccagac ggagctcagc caggagcgcc aaaacctctt
     3301 caccggctat tttcgctcac tgctcgactc ggatgactcc tccgacctct tggactttgc
     3361 cctctcagcc tctcgccctg agtcccggaa ggcatcaggc acctacacag ggccccccag
     3421 cagcgccctg cccgcccagc ggggcctggc caccttcccc agccggggag ccaaggccag
     3481 cccggtggca gtgggcagca gcggggctgg ggcggagccc tccttccagc ccgttctgcc
     3541 cactcgccag accttcccgc cgggccgggc agcgagctat gggctgaccc ccggcacttc
     3601 agactgccgg gcagccgaga ccttcccgaa gctggcccct ctgccttctg ccgtggctcg
     3661 ctcacctacc gcacacccgc ccaccaacac ctaccccccg cagtacgggg gctacggggc
     3721 tggacaaagt gtattcgcac ccactaagcc ctttacgggc caggactgcg ccaacagcaa
     3781 ggactgcagc tttgcctacg gcagtggcaa cagcctccct gcctcaccca gcagcgccca
     3841 cagcgctggc tacgccccac cgcctaccgg tggcccctgc ctgccaccaa gcaaggcgtc
     3901 cttcttcaac agctctgagg ggggcccctt ctctggttcg gcccccacac ccctgcgctg
     3961 tgacagccgg gccagcacgg tctcacccgg cggctacatg gtacccaagg gcaccacagc
     4021 ctctgccgcc tctgccgcgt cctcgtcgtc ctcctccttc cagccctcgc ctgagaactg
     4081 tcggcagttt gcgggggctt ctcagtggcc tttccggcag ggctatgggg gcctggactg
     4141 ggcctcggag gccttcagtc agctctacac tcccggtttc gactgccacg tcagcgagcc
     4201 caacgtgatc ctggacatct ccaactacac gccacagaag gtgaagcggc agacggccgc
     4261 gtccgagacc ttctccgagt cgtcctccga cagcacccag ctcagccagc ccggcggcgg
     4321 cggtttccgg cgcgccagca gcgaggcctc gagcagcgag ggccagtcga gcctgtccag
     4381 cctggagaaa ctgatgatgg actggaacga ggcgtcgtcc gcccccggtt acaactggaa
     4441 ccagagcgtc ctcttccaga gcagcgccaa gccgggccgc ggacggcgga agaaggtgga
     4501 cctgttcgag gcctcgcatc tgggcttccc gtcaaccgcc tcggccagcg ccgcgggcta
     4561 cccatccaaa cggagcaccg ggccccggca gcctcggggt ggacggggtg gcggggcctg
     4621 ctcggccaag aaggagcggg gcggggcggc ggccaaagcc aagttcatcc ccaagcccca
     4681 gccggtcaac ccgctgttcc aggacagccc agacctcggc ctggactact acagcgggga
     4741 cagcagcatg tcaccactgc cctcgcagtc gagggccttc agcgtgggcg agcgagatcc
     4801 ctgtgacttc atgggaccct actccatgaa cccgtccacg ccatcggacg gcaccttcgg
     4861 ccaaggcttc cactgcgact cgcccagcct cggcgcccct gagctggatg gcaagcattt
     4921 cccgccactg gcccacccgc ccacggtgtt tgatgctggc ctgcagaagg cctactctcc
     4981 cacctgctcc ccgaccctgg gcttcaagga agagctgcgg ccgccaccca cgaagctggc
     5041 tgcctgtgag cccctcaagc atgggctcca gggggccagc ctgagccatg cagctgcagc
     5101 ccaggcccac ctgagctgcc gggacctgcc gctgggccag ccccactacg actcccccag
     5161 ctgcaagggt acggcatatt ggtacccgcc aggctcagct gcccgcagcc cgccctatga
     5221 aggcaaggtg ggttcagggc tgctggctga cttcctgggc aggacggagg ccgcgtgcct
     5281 cagtgcccca cacctggcta gcccaccggc cacacctaag gccgacaagg agccactgga
     5341 gatggcccgg ccgcccggcc caccccgtgg ccccgctgca gctgctgctg gctatggctg
     5401 cccactcctt agtgacttaa ccctgtcccc tgtgccgagg gactcgctgc tgcccctgca
     5461 ggataccgcc tacaggtatc caggcttcat gccgcaggcg catcccggcc tgggtggggg
     5521 ccccaagagc ggcttcctgg ggcccatggc ggaacctcac cctgaggaca cattcaccgt
     5581 cacctccctg tagtgccaac tgaagtgccg actggacctc gaggttttgt tcctggcttt
     5641 cagaaaacca acgccaagac ccctcccagc gtccacatgg tcctccggca ggcgcctgcc
     5701 cctctgcctc ccgccccacc tcccctgcac cccctgcagc cccatcgccc caccccaccc
     5761 ctccctgccc atctcctcca cgcagaagcc gaaggtgagc cctttctgca caaaaccagc
     5821 aattgtaaat actttttaaa aatgtacaaa acttaaaaac aaaacacagt tttagaaaaa
     5881 gacaaaaaaa agagagagag agagagagag agagagaacg cgagcgtgtg caagaggttg
     5941 tgagcggggc ctcaaggtgt ccagagcccc tgcaagtatg cactgagaaa tttatctaca
     6001 ggtcgtt
//
LOCUS       XM_032646326            5728 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus AT-hook DNA binding motif containing 1
            (AHDC1), transcript variant X3, mRNA.
ACCESSION   XM_032646326
VERSION     XM_032646326.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5728
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5728
                     /gene="AHDC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760839"
     CDS             530..5314
                     /gene="AHDC1"
                     /codon_start=1
                     /product="AT-hook DNA-binding motif-containing protein 1"
                     /protein_id="XP_032502217.1"
                     /db_xref="GeneID:116760839"
                     /translation="MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPARPP
                     ASPPDKAFAHTFSENPRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPAGD
                     GSSSRRRWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPG
                     DLQYSFFSSPSLANSIRSPEERATPHAKSERSSHPLYEPEPEPRDSPQPGQGHSPGAT
                     AAAAGLPPEPEPDGPDYSELADADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLD
                     PQPRFLDPQALEPLGEALELPPLQPLADPLGLPGLALQALETLPDSLESQLLDPQALD
                     PLPKLLDVPSRRLEPQQPLGPCPLAEPLRLDLCSPHGPPGPEGHPKSALRRTDRPKIL
                     CRRRKAGRGRKADAGPEGRLLPLPVPTGLAAALAEPPPPPPPHTLPGPGPVPELEPES
                     SQTPVVPTRRGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRV
                     STEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPAVVAAEA
                     ATVAAATMAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCA
                     GRCSPPRCWTPSEPESVHQAPDTQSISHFLHRVQGFRRRGGKAGGFGGRGGGHAAKAA
                     RCSFSDFFEGIGKKKKVVAVAAAGVGGPGLAELGHPRKRGRGEVDAVTGKPKRKRRSR
                     KNGTLFPEQVPSGPGFGEAGTEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFAS
                     TGLESGASGRGSYYSTAAPAGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASR
                     PESRKASGTYTGPPSSALPAQRGLATFPSRGAKASPVAVGSSGAGAEPSFQPVLPTRQ
                     TFPPGRAASYGLTPGTSDCRAAETFPKLAPLPSAVARSPTAHPPTNTYPPQYGGYGAG
                     QSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKA
                     SFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASAASAASSSSSSFQPSP
                     ENCRQFAGASQWPFRQGYGGLDWASEAFSQLYTPGFDCHVSEPNVILDISNYTPQKVK
                     RQTAASETFSESSSDSTQLSQPGGGGFRRASSEASSSEGQSSLSSLEKLMMDWNEASS
                     APGYNWNQSVLFQSSAKPGRGRRKKVDLFEASHLGFPSTASASAAGYPSKRSTGPRQP
                     RGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQ
                     SRAFSVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHFPPLAHPP
                     TVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLSHAAAAQAHLS
                     CRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAACLSAP
                     HLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQD
                     TAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL"
     misc_feature    <2294..2440
                     /gene="AHDC1"
                     /note="Domain of unknown function (DUF4683); Region:
                     DUF4683; pfam15735"
                     /db_xref="CDD:464832"
     misc_feature    <3095..3670
                     /gene="AHDC1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tggggttccg gatggtgagc agcgaagctg ccaagcgccc gcgtcgctgc cgcggccgga
       61 agacaggacg gccccccaaa gcccctcgcc tggctcggac caacggagcc ggcagcccag
      121 cactccgatg ggagcttgcc tgcctgtctg cccattggcc tggaccccag agcctgccca
      181 gctgagtgcg tgcagagggc cccggctttg gggcgactct caggccgccg aagagaccac
      241 tctggaacca ctggcgaaga caggcctttc ttgctgagct gggcctgtct gcacagcctg
      301 ctcaggcgct gtccacgccc cgaggcctgg gctcaggccg aagctgctcc acagcacccc
      361 cagctgacag ccagcgactg gcagagcccc caggcacggg ggccctctct ctttcagaga
      421 tctccagtgt gacagcccag gcggcagagc cgagggtcct ggtcccggct tctcgcaccc
      481 tcatgtcagc cccggccccg cccggcggcc tgcggaggac aaggtcagga tgcgtgtgaa
      541 gccccagggc ctggtggtga cttccagtgc cgtgtgcagc tctcctgact acctccggga
      601 gcccaagtac taccccggcg gcccccccac cccccggccc ttgcttcccg cccggccccc
      661 tgccagccca cccgacaagg ccttcgccca caccttctct gagaacccgc gcccaccccc
      721 acgccgggac cccagcaccc ggcgcccacc agtccttgcc aagggggacg acccgctgcc
      781 cccgagggcg gcccgtcctg tctcccaggc ccgctgcccc acccccgcgg gagacggcag
      841 cagctcccga cggcgctggg acaacgggcg ggtgaacctg cgtccagtgg tccagctgat
      901 tgacatcatg aaggacctga cccggctctc ccaggacctt cagcacagcg gcgtgcacct
      961 ggactgcggt ggcctccggc tcagccgccc acctgccccg ccccccgggg accttcagta
     1021 tagcttcttc tcctcaccca gcctggccaa cagcatccgc agccctgagg agcgggccac
     1081 cccccatgcc aagtctgagc ggtccagcca ccccctctat gagcctgagc ctgagcctag
     1141 ggacagtccc cagcccggcc aaggccatag tcccggagcc acggccgcgg ccgccggtct
     1201 gccaccagag cccgagccag acggccctga ttactcagaa ctcgctgacg ccgacatcct
     1261 gagtgagctg gcctccctga cttgccccga ggcccagctg ctggaggccc aggccctcga
     1321 gccaccgtcg cctgagccag agcctcagct cctagacccc cagccccgct tcctggaccc
     1381 gcaggcacta gagccgctcg gggaagcttt ggagctgccg cccctgcaac cccttgctga
     1441 ccctctgggg ttgccgggcc tggctctgca ggccctagaa accctgcccg actccctgga
     1501 gtcgcagctg ctcgaccctc aggcacttga ccccctgccc aagttgcttg acgtccctag
     1561 ccgccgcctg gagccccagc agcccctggg accctgcccg ctggctgagc ccttgcgcct
     1621 ggacctgtgc tcaccccatg gccctcctgg gcccgagggt caccccaaat ccgccttgcg
     1681 gcgcaccgat aggccaaaga tcctgtgtcg ccgacggaaa gccggacggg gacgcaaggc
     1741 agacgccggc cccgagggcc gtctgctgcc cctgcctgtg cccacagggc tggcggctgc
     1801 cctggctgag cccccgcccc cgcccccacc tcacaccctg cccggcccag gcccagtccc
     1861 agagctggag cccgaatcct cccagacccc agtggtccct acccgcagag gcaagtgccg
     1921 gggcgtgcgg cgcatggtgg tgaagatggc caagatcccc gtgtcactgg gcaggcggaa
     1981 caagaccacg tacaaggtgt cgtctctgag cagcagcctg agcgtggagg gcaaggagct
     2041 gggcctgcgc gtgtccacag agcccacccc gctactgaag atgaagaaca atgggcggaa
     2101 cgtggtggtg gtcttcccac ccggcgagat gcccatcatt ctcaagcgta agcgcggccg
     2161 ccctcctaag aacctgctcc tgggccccgg caagcccaag gagccagcgg tggtggcggc
     2221 cgaggcagcc actgtggcag cagccaccat ggccatgccg gaggtgaaga aacggcggcg
     2281 gcggaagcag aagctggcgt ctccccagcc gtcctacgca gcagatgcca acgacagcaa
     2341 ggccgagtac tcagacgtcc tcgccaagct ggccttcctg aaccgccaga gccagtgcgc
     2401 tgggcggtgc tcaccgcccc gctgctggac acccagtgag cccgagtcag tgcaccaggc
     2461 gcccgacaca cagagcatct cccacttcct gcaccgtgtg cagggcttcc gacggcgagg
     2521 tggcaaggca ggcggttttg gtggccgggg tgggggccac gcggccaagg cggcccgatg
     2581 ctccttcagc gacttctttg agggcatcgg caagaaaaag aaggtggtgg ccgtggcagc
     2641 cgccggggtc gggggccctg gcctcgctga gttggggcac ccacgcaaac ggggccgggg
     2701 ggaggtagac gccgtgactg ggaagcccaa acgcaagagg cggtcccgga agaacgggac
     2761 tctgttcccg gaacaggtgc ccagtggccc aggctttggg gaggcgggca ctgagtgggc
     2821 cggggacaag ggtggtggct gggcccctca ccatgggcac ccgggcgggc aagctggccg
     2881 aaactgcggg ttccagggga ccgaggcccg ggcctttgcc tccactgggc tagagagcgg
     2941 ggcttcgggc cgtggcagct actacagcac agccgcacct gcgggccaga cggagctcag
     3001 ccaggagcgc caaaacctct tcaccggcta ttttcgctca ctgctcgact cggatgactc
     3061 ctccgacctc ttggactttg ccctctcagc ctctcgccct gagtcccgga aggcatcagg
     3121 cacctacaca gggcccccca gcagcgccct gcccgcccag cggggcctgg ccaccttccc
     3181 cagccgggga gccaaggcca gcccggtggc agtgggcagc agcggggctg gggcggagcc
     3241 ctccttccag cccgttctgc ccactcgcca gaccttcccg ccgggccggg cagcgagcta
     3301 tgggctgacc cccggcactt cagactgccg ggcagccgag accttcccga agctggcccc
     3361 tctgccttct gccgtggctc gctcacctac cgcacacccg cccaccaaca cctacccccc
     3421 gcagtacggg ggctacgggg ctggacaaag tgtattcgca cccactaagc cctttacggg
     3481 ccaggactgc gccaacagca aggactgcag ctttgcctac ggcagtggca acagcctccc
     3541 tgcctcaccc agcagcgccc acagcgctgg ctacgcccca ccgcctaccg gtggcccctg
     3601 cctgccacca agcaaggcgt ccttcttcaa cagctctgag gggggcccct tctctggttc
     3661 ggcccccaca cccctgcgct gtgacagccg ggccagcacg gtctcacccg gcggctacat
     3721 ggtacccaag ggcaccacag cctctgccgc ctctgccgcg tcctcgtcgt cctcctcctt
     3781 ccagccctcg cctgagaact gtcggcagtt tgcgggggct tctcagtggc ctttccggca
     3841 gggctatggg ggcctggact gggcctcgga ggccttcagt cagctctaca ctcccggttt
     3901 cgactgccac gtcagcgagc ccaacgtgat cctggacatc tccaactaca cgccacagaa
     3961 ggtgaagcgg cagacggccg cgtccgagac cttctccgag tcgtcctccg acagcaccca
     4021 gctcagccag cccggcggcg gcggtttccg gcgcgccagc agcgaggcct cgagcagcga
     4081 gggccagtcg agcctgtcca gcctggagaa actgatgatg gactggaacg aggcgtcgtc
     4141 cgcccccggt tacaactgga accagagcgt cctcttccag agcagcgcca agccgggccg
     4201 cggacggcgg aagaaggtgg acctgttcga ggcctcgcat ctgggcttcc cgtcaaccgc
     4261 ctcggccagc gccgcgggct acccatccaa acggagcacc gggccccggc agcctcgggg
     4321 tggacggggt ggcggggcct gctcggccaa gaaggagcgg ggcggggcgg cggccaaagc
     4381 caagttcatc cccaagcccc agccggtcaa cccgctgttc caggacagcc cagacctcgg
     4441 cctggactac tacagcgggg acagcagcat gtcaccactg ccctcgcagt cgagggcctt
     4501 cagcgtgggc gagcgagatc cctgtgactt catgggaccc tactccatga acccgtccac
     4561 gccatcggac ggcaccttcg gccaaggctt ccactgcgac tcgcccagcc tcggcgcccc
     4621 tgagctggat ggcaagcatt tcccgccact ggcccacccg cccacggtgt ttgatgctgg
     4681 cctgcagaag gcctactctc ccacctgctc cccgaccctg ggcttcaagg aagagctgcg
     4741 gccgccaccc acgaagctgg ctgcctgtga gcccctcaag catgggctcc agggggccag
     4801 cctgagccat gcagctgcag cccaggccca cctgagctgc cgggacctgc cgctgggcca
     4861 gccccactac gactccccca gctgcaaggg tacggcatat tggtacccgc caggctcagc
     4921 tgcccgcagc ccgccctatg aaggcaaggt gggttcaggg ctgctggctg acttcctggg
     4981 caggacggag gccgcgtgcc tcagtgcccc acacctggct agcccaccgg ccacacctaa
     5041 ggccgacaag gagccactgg agatggcccg gccgcccggc ccaccccgtg gccccgctgc
     5101 agctgctgct ggctatggct gcccactcct tagtgactta accctgtccc ctgtgccgag
     5161 ggactcgctg ctgcccctgc aggataccgc ctacaggtat ccaggcttca tgccgcaggc
     5221 gcatcccggc ctgggtgggg gccccaagag cggcttcctg gggcccatgg cggaacctca
     5281 ccctgaggac acattcaccg tcacctccct gtagtgccaa ctgaagtgcc gactggacct
     5341 cgaggttttg ttcctggctt tcagaaaacc aacgccaaga cccctcccag cgtccacatg
     5401 gtcctccggc aggcgcctgc ccctctgcct cccgccccac ctcccctgca ccccctgcag
     5461 ccccatcgcc ccaccccacc cctccctgcc catctcctcc acgcagaagc cgaaggtgag
     5521 ccctttctgc acaaaaccag caattgtaaa tactttttaa aaatgtacaa aacttaaaaa
     5581 caaaacacag ttttagaaaa agacaaaaaa aagagagaga gagagagaga gagagagaac
     5641 gcgagcgtgt gcaagaggtt gtgagcgggg cctcaaggtg tccagagccc ctgcaagtat
     5701 gcactgagaa atttatctac aggtcgtt
//
LOCUS       XM_032646363            1746 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BEN domain containing 5 (BEND5),
            transcript variant X1, mRNA.
ACCESSION   XM_032646363
VERSION     XM_032646363.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1746
                     /gene="BEND5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 14 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760865"
     CDS             100..1365
                     /gene="BEND5"
                     /codon_start=1
                     /product="BEN domain-containing protein 5 isoform X1"
                     /protein_id="XP_032502254.1"
                     /db_xref="GeneID:116760865"
                     /translation="MYAFVRFLEDNVCYALPVSCVRDFSPRSRLDFDNQKVYAVYRGP
                     EELGAGPESPPRAPRDWGALLLHKAQILALAEDKSDLENSVMQKKIKIPKLSLNHVEE
                     DGEVKDYGEEDLQLRHIKRPEGRKPSEVAHKSIEAVVARLEKQNGLSLGHSTCPEEVF
                     VEASPGPEDMDSLEDAGVPRALYEELLRNYQQQQDEMRHLQQELERTRRQLVQQAKKL
                     KEYGALVSEMKELRDLNRRLQDVLLLRLGSGPAIDLEKVKSECLEPEPELRSTFSEEA
                     NTSSYYPAPAPVMDKYILDNGKVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLAVMIWG
                     TDVLKNRSVTGVATKKKKDAVPKPPLSPHKLSIVRECLYDRIAQETVDETEIAQRLSK
                     VNKYICEKIMDINKSCKNEERREAKYNLQ"
     misc_feature    1066..1302
                     /gene="BEND5"
                     /note="BEN domain; Region: BEN; pfam10523"
                     /db_xref="CDD:463133"
ORIGIN      
        1 ccggcccggc cgcgcggctc gcgccccccg ccggctcccc acctccgcgc ccgccccgcg
       61 ggctgaccgg ccgaccgggg cccgcccccg gcgcccacca tgtacgcctt tgtgcggttc
      121 ctggaggaca acgtctgcta cgcgctgccc gtgtcgtgcg tgcgcgactt cagcccccgc
      181 tcgcggctgg attttgacaa ccagaaggtg tacgccgtgt accggggtcc ggaagaactg
      241 ggcgccgggc ccgagagccc cccgcgcgcc ccccgcgact ggggcgcgct gctgctccac
      301 aaggcccaga tcttggcgct ggcagaagac aaatctgacc ttgaaaacag tgtgatgcag
      361 aagaaaataa aaatccccaa actttctctc aatcatgtag aagaagatgg ggaagttaaa
      421 gattacgggg aagaagattt acagcttaga cacatcaaga gacccgaggg gcggaagccg
      481 agtgaagtgg cacacaagag catcgaggca gtggtggccc ggctggagaa gcagaacggc
      541 ctgagcctgg gccacagcac atgtccggaa gaggtcttcg tggaggcctc cccgggccca
      601 gaggacatgg acagtctgga ggacgccggt gtgccccggg ctctgtatga ggagctgctg
      661 cgcaactacc agcagcagca ggacgagatg cgccacctcc agcaggagct ggagcggact
      721 cgcaggcagc tggttcagca ggctaagaag ctcaaggagt acggggcgct ggtgtccgag
      781 atgaaggagc tccgcgacct caaccggagg ctgcaggacg tgctgctcct gaggctgggc
      841 agtggtcccg ccattgactt ggaaaaagta aagtcagaat gtctcgagcc cgagccggag
      901 ttacggagca ctttcagtga ggaagcaaat acgtcgtcct attaccccgc tcctgcacct
      961 gtcatggaca agtatatcct agacaatggc aaggtccatc tgggaagcgg gatttgggtt
     1021 gatgaggaga aatggcacca gctacaagta acccaaggag attccaagta cacaaagaac
     1081 ttggcagtca tgatttgggg aacagatgtt ctgaagaaca gaagcgtcac aggagttgcc
     1141 acaaaaaaaa agaaagatgc agtccctaag ccacccctct cgcctcacaa actaagcatc
     1201 gtcagagagt gtttgtacga cagaatagca caagaaactg tggatgaaac tgaaattgca
     1261 cagagactct ccaaagtcaa caagtacatc tgtgaaaaaa tcatggatat caataaatcc
     1321 tgtaaaaatg aagaacgaag ggaagcaaaa tataatttgc aataaacttt ggatttttca
     1381 taaagccttc tcgttttcct tgtgtggcgt gtgatttgcg ggcaatggtg ttgtccagat
     1441 cagaccccac catgcgtggt ggtgtgtggg cggggagcca gtagggttct gaggtcagcg
     1501 ccttgttctg aacttggact tcccactcca agaaggcgga tggatttgct gagactcagg
     1561 cagcatcctg gcgccagtgt tgttctgggg atggtgaaag cgctgtcttt tcggaggcgg
     1621 ataaagtgtc tctgagttac ctatcacttg gccaagaatt tgagctgata tttttaccat
     1681 tcaaggactt ctatctttgt tcctctattt tgttctataa taaagcttca ttaattcgtt
     1741 gctgta
//
LOCUS       XM_032646371            1666 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BEN domain containing 5 (BEND5),
            transcript variant X2, mRNA.
ACCESSION   XM_032646371
VERSION     XM_032646371.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1666
                     /gene="BEND5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116760865"
     CDS             100..1284
                     /gene="BEND5"
                     /codon_start=1
                     /product="BEN domain-containing protein 5 isoform X2"
                     /protein_id="XP_032502262.1"
                     /db_xref="GeneID:116760865"
                     /translation="MYAFVRFLEDNVCYALPVSCVRDFSPRSRLDFDNQKVYAVYRGP
                     EELGAGPESPPRAPRDWGALLLHKAQILALAEDKSDLENSVMQKKIKIPKLSLNHVEE
                     DGEVKDYGEEDLQLRHIKRPEGRKPSEVAHKSIEAVVARLEKQNGLSLGHSTCPEEVF
                     VEASPGPEDMDSLEDAGVPRALYEELLRNYQQQQDEMRHLQQELERTRRQLVQQAKKL
                     KEYGALVSEMKELRDLNRRLQDVLLLRLGSGPAIDLEKVKSECLEPEPELRSTFSEEA
                     NTSSYYPAPAPVMDKYILDNGKVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLAVMIWG
                     TDVLKNRSVTGVATKKKKDAVPKPPLSPHKLSIVRGPGTQWELSRRGLNKCHTETCKL
                     TP"
     misc_feature    <307..>930
                     /gene="BEND5"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1063..>1206
                     /gene="BEND5"
                     /note="The BEN domain is found in diverse animal proteins;
                     Region: BEN; smart01025"
                     /db_xref="CDD:214981"
ORIGIN      
        1 ccggcccggc cgcgcggctc gcgccccccg ccggctcccc acctccgcgc ccgccccgcg
       61 ggctgaccgg ccgaccgggg cccgcccccg gcgcccacca tgtacgcctt tgtgcggttc
      121 ctggaggaca acgtctgcta cgcgctgccc gtgtcgtgcg tgcgcgactt cagcccccgc
      181 tcgcggctgg attttgacaa ccagaaggtg tacgccgtgt accggggtcc ggaagaactg
      241 ggcgccgggc ccgagagccc cccgcgcgcc ccccgcgact ggggcgcgct gctgctccac
      301 aaggcccaga tcttggcgct ggcagaagac aaatctgacc ttgaaaacag tgtgatgcag
      361 aagaaaataa aaatccccaa actttctctc aatcatgtag aagaagatgg ggaagttaaa
      421 gattacgggg aagaagattt acagcttaga cacatcaaga gacccgaggg gcggaagccg
      481 agtgaagtgg cacacaagag catcgaggca gtggtggccc ggctggagaa gcagaacggc
      541 ctgagcctgg gccacagcac atgtccggaa gaggtcttcg tggaggcctc cccgggccca
      601 gaggacatgg acagtctgga ggacgccggt gtgccccggg ctctgtatga ggagctgctg
      661 cgcaactacc agcagcagca ggacgagatg cgccacctcc agcaggagct ggagcggact
      721 cgcaggcagc tggttcagca ggctaagaag ctcaaggagt acggggcgct ggtgtccgag
      781 atgaaggagc tccgcgacct caaccggagg ctgcaggacg tgctgctcct gaggctgggc
      841 agtggtcccg ccattgactt ggaaaaagta aagtcagaat gtctcgagcc cgagccggag
      901 ttacggagca ctttcagtga ggaagcaaat acgtcgtcct attaccccgc tcctgcacct
      961 gtcatggaca agtatatcct agacaatggc aaggtccatc tgggaagcgg gatttgggtt
     1021 gatgaggaga aatggcacca gctacaagta acccaaggag attccaagta cacaaagaac
     1081 ttggcagtca tgatttgggg aacagatgtt ctgaagaaca gaagcgtcac aggagttgcc
     1141 acaaaaaaaa agaaagatgc agtccctaag ccacccctct cgcctcacaa actaagcatc
     1201 gtcagaggtc ctggcacaca gtgggagctc agtcgccgag ggctgaacaa gtgccacact
     1261 gagacctgca agctgacccc ctgactgact cttcacactg tttcttgcga actactttcc
     1321 ttccatgtcg cagtgtcttc agctgaacac tcacctctta cgacagttaa gagggctgct
     1381 tggatggtag cttggaatag ttatgtttga ggtgtgagaa gaagtttcca ttctttgttg
     1441 acaagtgagc tgcccccatg gagccgacac gacctcgtga tggtcacatc attgaagctc
     1501 acgattgttc agtgctttgc agcttccagg ccccctcctg tctgctccca gcgcagggtg
     1561 atggggagta gaaattggaa ccaggtatcg aaagcctggg gttgagcccc aactctgctt
     1621 tgctttaact ttgagctcac cctggttctc ttatgtttat ttttgt
//
LOCUS       XR_004351873            3275 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BEN domain containing 5 (BEND5),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004351873
VERSION     XR_004351873.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3275
                     /gene="BEND5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760865"
     misc_RNA        1..3275
                     /gene="BEND5"
                     /product="BEN domain containing 5, transcript variant X3"
                     /db_xref="GeneID:116760865"
ORIGIN      
        1 ccggcccggc cgcgcggctc gcgccccccg ccggctcccc acctccgcgc ccgccccgcg
       61 ggctgaccgg ccgaccgggg cccgcccccg gcgcccacca tgtacgcctt tgtgcggttc
      121 ctggaggaca acgtctgcta cgcgctgccc gtgtcgtgcg tgcgcgactt cagcccccgc
      181 tcgcggctgg attttgacaa ccagaaggtg tacgccgtgt accggggtcc ggaagaactg
      241 ggcgccgggc ccgagagccc cccgcgcgcc ccccgcgact ggggcgcgct gctgctccac
      301 aaggcccaga tcttggcgct ggcagaagac aaatctgacc ttgaaaacag tgtgatgcag
      361 aagaaaataa aaatccccaa actttctctc aatcatgtag aagaagatgg ggaagttaaa
      421 gattacgggg aagaagattt acagcttaga cacatcaaga gacccgaggg gcggaagccg
      481 agtgaagtgg cacacaagag catcgaggca gtggtggccc ggctggagaa gcagaacggc
      541 ctgagcctgg gccacagcac atgtccggaa gaggtcttcg tggaggcctc cccgggccca
      601 gaggacatgg acagtctgga ggacgccggt gtgccccggg ctctgtatga ggagctgctg
      661 cgcaactacc agcagcagca ggacgagatg cgccacctcc agcaggagct ggagcggact
      721 cgcaggcagc tggttcagca ggctaagaag ctcaaggagt acggggcgct ggtgtccgag
      781 atgaaggagc tccgcgacct caaccggagg ctgcaggacg tgctgctcct gaggctgggc
      841 agtggtcccg ccattgactt ggaaaaagta aagtcagaat gtctcgagcc cgagccggag
      901 ttacggagca ctttcagtga ggaagcaaat acgtcgtcct attaccccgc tcctgcacct
      961 gtcatggaca agtatatcct agacaatggc aaggtccatc tgggaagcgg gatttgggtt
     1021 gatgaggaga aatggcacca gctacaagta acccaaggag attccaagta cacaaagaac
     1081 ttggcagtca tgatttgggg aacagatgtt ctgaagaaca gaagcgtcac aggagttgcc
     1141 acaaaaaaaa agaaagatgc agtccctaag ccacccctct cgcctcacaa actaagcatc
     1201 gtcagaggcc cagcgcagtg ccagtaccag gtagatgctt ggtgtgtcca tgtgtaaagg
     1261 caggattcac ggtcgttgtg ctggctgccc ggtggacctg tagacatttg tatgttcttt
     1321 ggaccccgtt cagatgatgt catttgcagc taatctggtc tccaatacta aggaacattc
     1381 tagaagaaaa tacctcagct gtgtggcttg gggctattac aggctcactg tcttcaggcc
     1441 cataggccag gccctccaag tttccctcac tgatccactc ctccattttc taagcccttt
     1501 ttaaaccttc tctacccttc cagaacatgg tagtccacag ctctctcttt ttcaaaagat
     1561 gaccatgtct cttccttcac agagaaaaga aaaagaaatc ccacagcttc gaaccaccct
     1621 atctacaaac ttcactggat cccccgtctt ctgcctcatg tttccttctc ttatttggga
     1681 ctggccgttc tctccaactg gatcacagcc cacctgcctt cctaagtacc ttgtctctcc
     1741 cgctcaactg ggtccttccc ggcaccattt aaatatactt tgatcactca tttcttacag
     1801 aagcaaacaa aacactccct agacatcact tccatcaccc agctgccgcc gtgtctctcc
     1861 gttccttttc acatccaggt ttcctgaaag agttgtctgc attcactgcc cgtgtgcact
     1921 gggaacgccc ctgccatctg gcatcggctc ccagccctct gcttaactct gtccttgcca
     1981 ggcttccccg tggctccgcc tctacctcct ccccggctgt ttgacctgat ccctcctcct
     2041 ttactgagaa accctcctgc atgctgaggt ctcctcctgc ctgtggcttc gcatcccccc
     2101 tgtgggctcc cctcctgctg ccctcgcctc tgtctccagc ccgcttctct ctcactctgc
     2161 aacgctgccc tccgctgctc tcactcccgc cgtccccatt gcccttggcg tgctcacggc
     2221 cctgggttga aatccacact cctggcgtct tggctgctgc ctggtgatct ggcctctggt
     2281 gactcccccg gcctcatctc acaccacact tcccgtttcc actgtgctct aaccactgag
     2341 gccttctccc ggccccctcc tgtccccact gccagcagtg cccttcctct ggtctgcaca
     2401 tcctgcctcc ttgtcattca gagaggccgt ccccgaccgc cccggctgat gaagtagccc
     2461 ttccattgct ctctgtcaca tcaccctccc taaagtccct gtggagcact tcttctttgc
     2521 ttgtttattt gcttgatggt tgtctctttc cccgcctccg ttagaacatc agatttatga
     2581 gcgtcttgct cagggccagc atatagtcag tgttcaataa atatttgttg aatcagagac
     2641 tgattcccaa atctatattt gacctcagct cacacttcca cgttcccgac ccatacatcc
     2701 aggtgcccac tggtcacctc ctcctggatg tccacgtgac gctggcacat ctgcaccgct
     2761 cactgctctc tcttcttcct tctccccaaa gccttctgtc cctctgtgtt ccctgccttg
     2821 ataaatggca ccacctgcca gggacccaga gaggcctcat tgctgactct tccacgtgcc
     2881 cgctctccat ctgttctgcc ccaaatacct tttaaaccgt ccacttctct ccatacccat
     2941 cgcgcctcac gtagtccagg ccacatcacc tctcccctgc cttactccag cagctgccag
     3001 actcttctct ccatttgtaa ccagagtgat ctttcagaaa cccagtatga tcctgttacc
     3061 accaccccgt cacagccagt ccctggtgcc cattattgaa ggagtgtttg tacgacagaa
     3121 tagcacaaga aactgtggat gaaactgaaa ttgcacagag actctccaaa gtcaacaagt
     3181 acatctgtga aaaaatcatg gatatcaata aatcctgtaa aaatgaagaa cgaagggaag
     3241 caaaatataa tttgcaataa actttggatt tttca
//
LOCUS       XM_032646383            1858 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BEN domain containing 5 (BEND5),
            transcript variant X4, mRNA.
ACCESSION   XM_032646383
VERSION     XM_032646383.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1858
                     /gene="BEND5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 Proteins, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760865"
     CDS             724..1482
                     /gene="BEND5"
                     /codon_start=1
                     /product="BEN domain-containing protein 5 isoform X3"
                     /protein_id="XP_032502274.1"
                     /db_xref="GeneID:116760865"
                     /translation="MDSLEDAGVPRALYEELLRNYQQQQDEMRHLQQELERTRRQLVQ
                     QAKKLKEYGALVSEMKELRDLNRRLQDVLLLRLGSGPAIDLEKVKSECLEPEPELRST
                     FSEEANTSSYYPAPAPVMDKYILDNGKVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLA
                     VMIWGTDVLKNRSVTGVATKKKKDAVPKPPLSPHKLSIVRECLYDRIAQETVDETEIA
                     QRLSKVNKYICEKIMDINKSCKNEERREAKYNLQ"
     misc_feature    1183..1419
                     /gene="BEND5"
                     /note="BEN domain; Region: BEN; pfam10523"
                     /db_xref="CDD:463133"
ORIGIN      
        1 gggggagccc gggtcccggg agccgccccc gccccccggc ccggccgcgc ggctcgcgcc
       61 ccccgccggc tccccacctc cgcgcccgcc ccgcgggctg accggccgac cggggcccgc
      121 ccccggcgcc caccatgtac gcctttgtgc ggttcctgga ggacaacgtc tgctacgcgc
      181 tgcccgtgtc gtgcgtgcgc gacttcagcc cccgctcgcg gctggatttt gacaaccaga
      241 aggtgtacgc cgtgtaccgg ggtccggaag aactgggcgc cgggcccgag agccccccgc
      301 gcgccccccg cgactggggc gcgctgctgc tccacaaggc ccagatcttg gcgctggcag
      361 aagacaaatc tgaccttgaa aacagtgtga tgcagaagaa aataaaaatc cccaaacttt
      421 ctctcaatca tgtagaagaa gatggggaag ttaaagatta cggggaagaa gatttacagc
      481 ttagacacat caaggattgt ctggggaaat attgagccgc agcccaagaa agtcccagct
      541 gcccttgcct gaactgattc tcgttgtcct acacagagac ccgaggggcg gaagccgagt
      601 gaagtggcac acaagagcat cgaggcagtg gtggcccggc tggagaagca gaacggcctg
      661 agcctgggcc acagcacatg tccggaagag gtcttcgtgg aggcctcccc gggcccagag
      721 gacatggaca gtctggagga cgccggtgtg ccccgggctc tgtatgagga gctgctgcgc
      781 aactaccagc agcagcagga cgagatgcgc cacctccagc aggagctgga gcggactcgc
      841 aggcagctgg ttcagcaggc taagaagctc aaggagtacg gggcgctggt gtccgagatg
      901 aaggagctcc gcgacctcaa ccggaggctg caggacgtgc tgctcctgag gctgggcagt
      961 ggtcccgcca ttgacttgga aaaagtaaag tcagaatgtc tcgagcccga gccggagtta
     1021 cggagcactt tcagtgagga agcaaatacg tcgtcctatt accccgctcc tgcacctgtc
     1081 atggacaagt atatcctaga caatggcaag gtccatctgg gaagcgggat ttgggttgat
     1141 gaggagaaat ggcaccagct acaagtaacc caaggagatt ccaagtacac aaagaacttg
     1201 gcagtcatga tttggggaac agatgttctg aagaacagaa gcgtcacagg agttgccaca
     1261 aaaaaaaaga aagatgcagt ccctaagcca cccctctcgc ctcacaaact aagcatcgtc
     1321 agagagtgtt tgtacgacag aatagcacaa gaaactgtgg atgaaactga aattgcacag
     1381 agactctcca aagtcaacaa gtacatctgt gaaaaaatca tggatatcaa taaatcctgt
     1441 aaaaatgaag aacgaaggga agcaaaatat aatttgcaat aaactttgga tttttcataa
     1501 agccttctcg ttttccttgt gtggcgtgtg atttgcgggc aatggtgttg tccagatcag
     1561 accccaccat gcgtggtggt gtgtgggcgg ggagccagta gggttctgag gtcagcgcct
     1621 tgttctgaac ttggacttcc cactccaaga aggcggatgg atttgctgag actcaggcag
     1681 catcctggcg ccagtgttgt tctggggatg gtgaaagcgc tgtcttttcg gaggcggata
     1741 aagtgtctct gagttaccta tcacttggcc aagaatttga gctgatattt ttaccattca
     1801 aggacttcta tctttgttcc tctattttgt tctataataa agcttcatta attcgttg
//
LOCUS       XM_032646392            1460 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BEN domain containing 5 (BEND5),
            transcript variant X5, mRNA.
ACCESSION   XM_032646392
VERSION     XM_032646392.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1460
                     /gene="BEND5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116760865"
     CDS             326..1084
                     /gene="BEND5"
                     /codon_start=1
                     /product="BEN domain-containing protein 5 isoform X3"
                     /protein_id="XP_032502283.1"
                     /db_xref="GeneID:116760865"
                     /translation="MDSLEDAGVPRALYEELLRNYQQQQDEMRHLQQELERTRRQLVQ
                     QAKKLKEYGALVSEMKELRDLNRRLQDVLLLRLGSGPAIDLEKVKSECLEPEPELRST
                     FSEEANTSSYYPAPAPVMDKYILDNGKVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLA
                     VMIWGTDVLKNRSVTGVATKKKKDAVPKPPLSPHKLSIVRECLYDRIAQETVDETEIA
                     QRLSKVNKYICEKIMDINKSCKNEERREAKYNLQ"
     misc_feature    785..1021
                     /gene="BEND5"
                     /note="BEN domain; Region: BEN; pfam10523"
                     /db_xref="CDD:463133"
ORIGIN      
        1 cggaagaact gggcgccggg cccgagagcc ccccgcgcgc cccccgcgac tggggcgcgc
       61 tgctgctcca caaggcccag atcttggcgc tggcaggatt gtctggggaa atattgagcc
      121 gcagcccaag aaagtcccag ctgcccttgc ctgaactgat tctcgttgtc ctacacagag
      181 acccgagggg cggaagccga gtgaagtggc acacaagagc atcgaggcag tggtggcccg
      241 gctggagaag cagaacggcc tgagcctggg ccacagcaca tgtccggaag aggtcttcgt
      301 ggaggcctcc ccgggcccag aggacatgga cagtctggag gacgccggtg tgccccgggc
      361 tctgtatgag gagctgctgc gcaactacca gcagcagcag gacgagatgc gccacctcca
      421 gcaggagctg gagcggactc gcaggcagct ggttcagcag gctaagaagc tcaaggagta
      481 cggggcgctg gtgtccgaga tgaaggagct ccgcgacctc aaccggaggc tgcaggacgt
      541 gctgctcctg aggctgggca gtggtcccgc cattgacttg gaaaaagtaa agtcagaatg
      601 tctcgagccc gagccggagt tacggagcac tttcagtgag gaagcaaata cgtcgtccta
      661 ttaccccgct cctgcacctg tcatggacaa gtatatccta gacaatggca aggtccatct
      721 gggaagcggg atttgggttg atgaggagaa atggcaccag ctacaagtaa cccaaggaga
      781 ttccaagtac acaaagaact tggcagtcat gatttgggga acagatgttc tgaagaacag
      841 aagcgtcaca ggagttgcca caaaaaaaaa gaaagatgca gtccctaagc cacccctctc
      901 gcctcacaaa ctaagcatcg tcagagagtg tttgtacgac agaatagcac aagaaactgt
      961 ggatgaaact gaaattgcac agagactctc caaagtcaac aagtacatct gtgaaaaaat
     1021 catggatatc aataaatcct gtaaaaatga agaacgaagg gaagcaaaat ataatttgca
     1081 ataaactttg gatttttcat aaagccttct cgttttcctt gtgtggcgtg tgatttgcgg
     1141 gcaatggtgt tgtccagatc agaccccacc atgcgtggtg gtgtgtgggc ggggagccag
     1201 tagggttctg aggtcagcgc cttgttctga acttggactt cccactccaa gaaggcggat
     1261 ggatttgctg agactcaggc agcatcctgg cgccagtgtt gttctgggga tggtgaaagc
     1321 gctgtctttt cggaggcgga taaagtgtct ctgagttacc tatcacttgg ccaagaattt
     1381 gagctgatat ttttaccatt caaggacttc tatctttgtt cctctatttt gttctataat
     1441 aaagcttcat taattcgttg
//
LOCUS       XR_004351877             451 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116760885
            (LOC116760885), ncRNA.
ACCESSION   XR_004351877
VERSION     XR_004351877.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..451
                     /gene="LOC116760885"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116760885"
     ncRNA           1..451
                     /ncRNA_class="lncRNA"
                     /gene="LOC116760885"
                     /product="uncharacterized LOC116760885"
                     /db_xref="GeneID:116760885"
ORIGIN      
        1 gcttcacacc tgagatctgc cactttcaaa gtctgagacc ttgggagacc gtcacaaaca
       61 cttgtataca ccccaagcac cgtgaatctt cctgttgact tacgagctcc gtgaatcatc
      121 ataactaccc tacgaggaaa ctgagtcaca gagaaattga agaacttgac caagatcaca
      181 tgggtagaaa aagggcggag tctgggtgag aaaacaagtt cagaggggcc atgcaaatcg
      241 ctaaggtttc acaggtgatg agtggcagag gccagaaaag aacccaagca gctgggctca
      301 ctgtgagagg agaggaggcc gagttcccaa ctattggtca acctgtctgc cttcgtcact
      361 agactgagag cgtctcagtc tattggagga ctattttcca actgatttta tattcataat
      421 gcagttaatg tctgataagt aaataaatga a
//
LOCUS       XM_032646413             864 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline-rich protein HaeIII subfamily 1
            (LOC116760889), mRNA.
ACCESSION   XM_032646413
VERSION     XM_032646413.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..864
                     /gene="LOC116760889"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:116760889"
     CDS             1..864
                     /gene="LOC116760889"
                     /codon_start=1
                     /product="proline-rich protein HaeIII subfamily 1"
                     /protein_id="XP_032502304.1"
                     /db_xref="GeneID:116760889"
                     /translation="MARAEDGGRRPEQAHGPGRARDWTGQDGTQLLGGGGSAGGAGAG
                     PGAAPPPSRLPPPPPPPARPAPCDPRRPRTKRRDGGAGRRPGWGRERASLGRANVGDG
                     PGPAEGRGQGGIEGLRPSLGRRNLTGDPSPSLELGTEARPTRDPRPAGTNAGRGMRRL
                     VATERRPAHLPVPGQLRPLCRAAGSPCCPRRRLRLRWTASHAPSPAPPRRFSRPSHRV
                     QAGKPRPRGSRLDPDLAEDGGGGEGEEIPLSLQGRVCRTSPHPSQPQTSELEAMKGEQ
                     QQRPLGGPYVA"
ORIGIN      
        1 atggcgcggg cggaggacgg cggaaggcgg ccggagcaag ctcacgggcc gggccgcgcc
       61 agggactgga ctggacaaga cgggacgcag ctcctgggag gcggcgggag cgcgggcggc
      121 gcgggggcgg gaccgggggc agcaccaccc ccttcccgcc tccccccccc cccccccccg
      181 ccggcccgcc cggcgccctg cgacccgcgg cggccgcgaa caaagcgccg ggacggcggc
      241 gccgggcgga ggcctggctg ggggagggag agggccagtc tgggtcgggc caatgtgggt
      301 gatgggcctg gcccggccga ggggcggggg cagggcggga tcgaggggct gcgcccctcc
      361 ctcggcagga ggaacctgac gggggacccc agcccctcgc tggaactggg gacggaagct
      421 cggccgaccc gggacccccg gcctgccggg accaatgcgg gccgggggat gcggcgattg
      481 gtcgcaacgg agcgcagacc cgcccacctc ccggtcccgg gtcagctccg gcccctctgc
      541 agggctgcgg gctccccctg ctgtccgagg cgacgattgc gtctccggtg gacggccagc
      601 cacgccccct ccccagctcc cccaaggcgc ttctccagac cttcccacag ggtccaggcg
      661 ggtaaaccga gacccagagg gtccagatta gaccccgacc tagctgaaga tggtggaggt
      721 ggggagggag aggagatccc tctgtccctc cagggccggg tctgccgcac atcccctcac
      781 ccaagccagc cacagacctc tgagctggag gcaatgaagg gtgagcagca gcagaggccc
      841 ctcgggggtc cctacgtcgc ctag
//
LOCUS       XM_032646424            4211 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus desumoylating isopeptidase 2 (DESI2),
            transcript variant X1, mRNA.
ACCESSION   XM_032646424
VERSION     XM_032646424.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4211
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4211
                     /gene="DESI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 11 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116760895"
     CDS             247..948
                     /gene="DESI2"
                     /codon_start=1
                     /product="deubiquitinase DESI2 isoform X1"
                     /protein_id="XP_032502315.1"
                     /db_xref="GeneID:116760895"
                     /translation="MGANQLVVLNVYDMLGSRAGLPTPHELRGSPASPTPTACSARPA
                     QDFKNSQALYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASEL
                     GETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCG
                     KEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAASASM
                     ASTAAGSRPGRHTKL"
     misc_feature    265..810
                     /gene="DESI2"
                     /note="PPPDE putative peptidase domain; Region:
                     Peptidase_C97; pfam05903"
                     /db_xref="CDD:461775"
ORIGIN      
        1 ctgccggggg aggcgcctga gccggagcgg gccgcctgcg gtccggcccg gtcggcgcag
       61 agggtgtagt tggcggcgcg cgggagcgag tcgcttcccg atgttcccgc cccggctgcc
      121 gcgggccgcg ctgtgcgctt agtgcccggc tccggccccc tgaggcgtcc ggggggcggt
      181 gagagcggcc tcggccccgc ggagacgaag cagctggagg gcgaggcggc ggccgccggg
      241 aggaggatgg gggctaacca gttagtggtg ctcaacgtgt acgacatgct tgggtcgcgg
      301 gccggacttc ccactccaca cgaactccgg ggcagccccg cttctcccac gccgactgcc
      361 tgctctgcca gaccagccca agacttcaaa aactcccaag ctctttattg gatgaacgaa
      421 tatacctcat ccatcggaat tggagttttt cattcaggaa ttgaagtata tggcagagaa
      481 tttgcttatg gtggccatcc ttaccccttt tctggaatat ttgaaatttc cccaggaaat
      541 gcttctgaac taggagaaac atttaaattt aaagaagctg ttgttttagg gagcaccgac
      601 ttcctggaag atgatataga aaaaattgta gaagaattgg gaaaagaata caaaggcaac
      661 gcttaccatt tgatgcataa aaactgcaac cacttttctt cggctttatc agagattctt
      721 tgtgggaaag agattcctcg ctggatcaac cggcttgcct acttcagctc ctgtataccc
      781 tttctccaga gttgcctccc aaaggagtgg ctcactcccg cagccctgca gtctagcgtc
      841 agccaagagc tccaggacga actggaggaa gcggaggatg ctgcagcctc cgcttccatg
      901 gccagcactg ccgcaggctc cagacccggg cgccacacta aactgtaaat gtctccaaag
      961 tcacgcattc agaactgtct ctggcagttg aatatcacta gagaagagta aaagagtaaa
     1021 tgtcctctgg atattttgta tgcaaagatg gctctccccc aaatcccagt ttttcagctc
     1081 aggattatat ttgtaatcaa aaaaaaaaaa aaatcacttg gcgcaggagg gagaactttg
     1141 tatgaagctg ccctctgtct tttttaccca cttgtaaatt tggatttact tctgttttat
     1201 ataagctctg ttaagttatg tttacagtat tttgtatcgc tgtttacaaa tcttgcatgg
     1261 actcctgcca ccatgaaaga agaaaacctt catgtcttca aaaattaggc aggtaatctt
     1321 tgtacacttc tgacaattgc ccgagcttcg gcataaataa taggcacaca agaaggtact
     1381 tacacagtta tagtcaccat cacctgctta agaattgtct tttaggtttg tgtttgttac
     1441 cattttggta ccagggtgca cagaggtgaa ggagcacaca cagccctgag ggcttgggac
     1501 ctcgatctgc gtgagaggcg cccgaccctg ggcacccagc actccctcca ctccaagtgg
     1561 tacatctcct gaggttccca ccgaacggtg gctttcatcc caaatatctg gccacctcca
     1621 cggggtggta tactcccatg tcagtctggc tttgatgcct ctgattctat aagtaagatg
     1681 tttttcgtta aaggtattct tacaagtaac aagtgttttt gcacatgtgt tgggggcttc
     1741 atttttattt taatatatat tgatatcctc cctgcagagg attttgtttg tggggcagga
     1801 atatcctaag tggtagcctt ctgagtagca gtgtgagttg acattcaact gcttttaagt
     1861 cttcaggcta ccttttatac cacaccttga aaactagagt ctaaagtaac actctccaaa
     1921 aagttaatac tttgatattt taaacacttt atgtaccgta ccagaaagag tatgttgcag
     1981 tttgttagtt tgttatggga gtagtttcac ctcataatag aaagcttagt ctcattgacc
     2041 ccctgtggaa aactcatatt tatgtgtctt attcatcttt ttctttctct caaatgtatg
     2101 tctcttacat aacctactcg aagaatgaaa ttgtcaccac agataagtcc tcattagcaa
     2161 ggaatctgtc tgctcaagtc tactccgagt ttgacccttg gatgtaagag ccaagtcatt
     2221 acatgtcaaa ttcaattttt ctgccttaag aatgaatgtt ctacataaaa tattggatgc
     2281 agtgtataaa ttatccaagg cagtgacttc agctttatat atatatatat atatatatat
     2341 atatatatat atatatatat atatatatat atcgttagtt ttaaaatcat ctacttttat
     2401 ttaaacttct agattggatt gtttgctatt gctttttgta aggatacata tctttcagta
     2461 cactacattt ttaacttttc cataagctga ttttgagtca ttttatcaaa ttaagcacac
     2521 cctgttcata gggaaaataa accttgggtt tgacctgagg aaaatgaagc cacttaacct
     2581 aatttatgct tttgactgtt ctgttgctgg aaaggaaagc ttttaccaat tattctcagt
     2641 tcttttagcg gggggggggg gggggggggg gcagagcact tgttttaaga gatgtgacag
     2701 aaaggaatct acgatcttta tgaaaagttg acctgattca ggtctaaaaa tgagattttg
     2761 aataaaatgc gaagactctt gacagtgaat cagttcactc aaagaagagt cctatcacta
     2821 aaacccaggt tagtgaaaaa tgtttgatgc cattcgcttg ggattttttg tttttaataa
     2881 tgtgatggat tccagttttt tctaatccat tcaaatagac atgagtttaa atctgtgcta
     2941 cggacacacg tgaaggagtg gccattattt aggcacttct tggcgagtag ccaggagcct
     3001 tccacctttg cttatccaga atccagcgcc tcagcacaca aatgatttta ttgtcttttt
     3061 gttgtactga ctttcatctg cagcatttgg agtttaaaaa tagtgttaag gtcctagtaa
     3121 aaataaataa tggccctgag gccaattatc gtagaaccac cagataaaat tctggacgtg
     3181 agattgcttg cagtctaatg gtacttgagg ttgagaaata aatgtcttta ctttagaaaa
     3241 tctcatttaa gtcagtttgt ccactacagt tcaaaattga gggtgaattc agttaactag
     3301 catttcacca gctttccctt gcccttggag gaaaagaatc ttgttctcaa cctgatctct
     3361 gttaagaaaa atcctatata aaaaatctgg tcattaagat acatgtgata tgatggcatc
     3421 agatattctc ttcgtagttg taaccaagtg aaacacattt ctcattgtgg gttggacagt
     3481 aatatagtgt taagagggtc agaagctgct ggtttctact gtttgttttc agtgcccttg
     3541 ggttttgttt tttctttgtt tcaaccctaa gaaaggggca tcagctttgg aaagtgtggc
     3601 ctgtggaatg gtagaaggca gtgatgcagc agtaaagaga gcctccactt gatgcctgaa
     3661 atccagccca ctattgttct gacccacagc aatagtgcaa gttaccttca ccagcatttg
     3721 tacatagcag ggaattctgg ttttcaccaa tggatagcat tgtgtgtatg aggagattca
     3781 accctacaga cagctgcggg actctatatc catggcttct ttccatcaca aaacgggtag
     3841 aaactcattc actgcttcag ggttctagtc tgtgtgtctt ctaatgggtc catttctata
     3901 agatactctg taattttgat acatgctgtg ttttctttca gtgactaagt ttaaaaggct
     3961 tgggttttgt ccagcaagct ggccatactg ccattgtacc cctttccttc agtatggttt
     4021 agagtgcagc tcagtcatta gactttcatt gtctcctcag tcaatacaca tcttcactgt
     4081 ttgaaaggtg ttacagctgt tcaagaatct tcatgaacct gaggataatt tcttgtgaag
     4141 ttgaatgcaa atgtactgtc attcatagtg tttatataaa aaaaaaaaat accaggaatc
     4201 ttcacttttg c
//
LOCUS       XM_032646431            4095 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus desumoylating isopeptidase 2 (DESI2),
            transcript variant X2, mRNA.
ACCESSION   XM_032646431
VERSION     XM_032646431.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4095
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4095
                     /gene="DESI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116760895"
     CDS             230..832
                     /gene="DESI2"
                     /codon_start=1
                     /product="deubiquitinase DESI2 isoform X2"
                     /protein_id="XP_032502322.1"
                     /db_xref="GeneID:116760895"
                     /translation="MGANQLVVLNVYDMLGSRAGLPTPHELRGSPASPTPTACSARPA
                     QDFKNSQALYWMNEYTSSIGIGVFHSGIEVYGRAVVLGSTDFLEDDIEKIVEELGKEY
                     KGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAA
                     LQSSVSQELQDELEEAEDAAASASMASTAAGSRPGRHTKL"
     misc_feature    248..694
                     /gene="DESI2"
                     /note="PPPDE putative peptidase domain; Region:
                     Peptidase_C97; pfam05903"
                     /db_xref="CDD:461775"
ORIGIN      
        1 tgagccggag cgggccgcct gcggtccggc ccggtcggcg cagagggtgt agttggcggc
       61 gcgcgggagc gagtcgcttc ccgatgttcc cgccccggct gccgcgggcc gcgctgtgcg
      121 cttagtgccc ggctccggcc ccctgaggcg tccggggggc ggtgagagcg gcctcggccc
      181 cgcggagacg aagcagctgg agggcgaggc ggcggccgcc gggaggagga tgggggctaa
      241 ccagttagtg gtgctcaacg tgtacgacat gcttgggtcg cgggccggac ttcccactcc
      301 acacgaactc cggggcagcc ccgcttctcc cacgccgact gcctgctctg ccagaccagc
      361 ccaagacttc aaaaactccc aagctcttta ttggatgaac gaatatacct catccatcgg
      421 aattggagtt tttcattcag gaattgaagt atatggcaga gctgttgttt tagggagcac
      481 cgacttcctg gaagatgata tagaaaaaat tgtagaagaa ttgggaaaag aatacaaagg
      541 caacgcttac catttgatgc ataaaaactg caaccacttt tcttcggctt tatcagagat
      601 tctttgtggg aaagagattc ctcgctggat caaccggctt gcctacttca gctcctgtat
      661 accctttctc cagagttgcc tcccaaagga gtggctcact cccgcagccc tgcagtctag
      721 cgtcagccaa gagctccagg acgaactgga ggaagcggag gatgctgcag cctccgcttc
      781 catggccagc actgccgcag gctccagacc cgggcgccac actaaactgt aaatgtctcc
      841 aaagtcacgc attcagaact gtctctggca gttgaatatc actagagaag agtaaaagag
      901 taaatgtcct ctggatattt tgtatgcaaa gatggctctc ccccaaatcc cagtttttca
      961 gctcaggatt atatttgtaa tcaaaaaaaa aaaaaaatca cttggcgcag gagggagaac
     1021 tttgtatgaa gctgccctct gtctttttta cccacttgta aatttggatt tacttctgtt
     1081 ttatataagc tctgttaagt tatgtttaca gtattttgta tcgctgttta caaatcttgc
     1141 atggactcct gccaccatga aagaagaaaa ccttcatgtc ttcaaaaatt aggcaggtaa
     1201 tctttgtaca cttctgacaa ttgcccgagc ttcggcataa ataataggca cacaagaagg
     1261 tacttacaca gttatagtca ccatcacctg cttaagaatt gtcttttagg tttgtgtttg
     1321 ttaccatttt ggtaccaggg tgcacagagg tgaaggagca cacacagccc tgagggcttg
     1381 ggacctcgat ctgcgtgaga ggcgcccgac cctgggcacc cagcactccc tccactccaa
     1441 gtggtacatc tcctgaggtt cccaccgaac ggtggctttc atcccaaata tctggccacc
     1501 tccacggggt ggtatactcc catgtcagtc tggctttgat gcctctgatt ctataagtaa
     1561 gatgtttttc gttaaaggta ttcttacaag taacaagtgt ttttgcacat gtgttggggg
     1621 cttcattttt attttaatat atattgatat cctccctgca gaggattttg tttgtggggc
     1681 aggaatatcc taagtggtag ccttctgagt agcagtgtga gttgacattc aactgctttt
     1741 aagtcttcag gctacctttt ataccacacc ttgaaaacta gagtctaaag taacactctc
     1801 caaaaagtta atactttgat attttaaaca ctttatgtac cgtaccagaa agagtatgtt
     1861 gcagtttgtt agtttgttat gggagtagtt tcacctcata atagaaagct tagtctcatt
     1921 gaccccctgt ggaaaactca tatttatgtg tcttattcat ctttttcttt ctctcaaatg
     1981 tatgtctctt acataaccta ctcgaagaat gaaattgtca ccacagataa gtcctcatta
     2041 gcaaggaatc tgtctgctca agtctactcc gagtttgacc cttggatgta agagccaagt
     2101 cattacatgt caaattcaat ttttctgcct taagaatgaa tgttctacat aaaatattgg
     2161 atgcagtgta taaattatcc aaggcagtga cttcagcttt atatatatat atatatatat
     2221 atatatatat atatatatat atatatatat atatatcgtt agttttaaaa tcatctactt
     2281 ttatttaaac ttctagattg gattgtttgc tattgctttt tgtaaggata catatctttc
     2341 agtacactac atttttaact tttccataag ctgattttga gtcattttat caaattaagc
     2401 acaccctgtt catagggaaa ataaaccttg ggtttgacct gaggaaaatg aagccactta
     2461 acctaattta tgcttttgac tgttctgttg ctggaaagga aagcttttac caattattct
     2521 cagttctttt agcggggggg gggggggggg gggggcagag cacttgtttt aagagatgtg
     2581 acagaaagga atctacgatc tttatgaaaa gttgacctga ttcaggtcta aaaatgagat
     2641 tttgaataaa atgcgaagac tcttgacagt gaatcagttc actcaaagaa gagtcctatc
     2701 actaaaaccc aggttagtga aaaatgtttg atgccattcg cttgggattt tttgttttta
     2761 ataatgtgat ggattccagt tttttctaat ccattcaaat agacatgagt ttaaatctgt
     2821 gctacggaca cacgtgaagg agtggccatt atttaggcac ttcttggcga gtagccagga
     2881 gccttccacc tttgcttatc cagaatccag cgcctcagca cacaaatgat tttattgtct
     2941 ttttgttgta ctgactttca tctgcagcat ttggagttta aaaatagtgt taaggtccta
     3001 gtaaaaataa ataatggccc tgaggccaat tatcgtagaa ccaccagata aaattctgga
     3061 cgtgagattg cttgcagtct aatggtactt gaggttgaga aataaatgtc tttactttag
     3121 aaaatctcat ttaagtcagt ttgtccacta cagttcaaaa ttgagggtga attcagttaa
     3181 ctagcatttc accagctttc ccttgccctt ggaggaaaag aatcttgttc tcaacctgat
     3241 ctctgttaag aaaaatccta tataaaaaat ctggtcatta agatacatgt gatatgatgg
     3301 catcagatat tctcttcgta gttgtaacca agtgaaacac atttctcatt gtgggttgga
     3361 cagtaatata gtgttaagag ggtcagaagc tgctggtttc tactgtttgt tttcagtgcc
     3421 cttgggtttt gttttttctt tgtttcaacc ctaagaaagg ggcatcagct ttggaaagtg
     3481 tggcctgtgg aatggtagaa ggcagtgatg cagcagtaaa gagagcctcc acttgatgcc
     3541 tgaaatccag cccactattg ttctgaccca cagcaatagt gcaagttacc ttcaccagca
     3601 tttgtacata gcagggaatt ctggttttca ccaatggata gcattgtgtg tatgaggaga
     3661 ttcaacccta cagacagctg cgggactcta tatccatggc ttctttccat cacaaaacgg
     3721 gtagaaactc attcactgct tcagggttct agtctgtgtg tcttctaatg ggtccatttc
     3781 tataagatac tctgtaattt tgatacatgc tgtgttttct ttcagtgact aagtttaaaa
     3841 ggcttgggtt ttgtccagca agctggccat actgccattg tacccctttc cttcagtatg
     3901 gtttagagtg cagctcagtc attagacttt cattgtctcc tcagtcaata cacatcttca
     3961 ctgtttgaaa ggtgttacag ctgttcaaga atcttcatga acctgaggat aatttcttgt
     4021 gaagttgaat gcaaatgtac tgtcattcat agtgtttata taaaaaaaaa aaataccagg
     4081 aatcttcact tttgc
//
LOCUS       XM_032646440            4077 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus desumoylating isopeptidase 2 (DESI2),
            transcript variant X3, mRNA.
ACCESSION   XM_032646440
VERSION     XM_032646440.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4077
                     /gene="DESI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 7 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116760895"
     CDS             230..814
                     /gene="DESI2"
                     /codon_start=1
                     /product="deubiquitinase DESI2 isoform X3"
                     /protein_id="XP_032502331.1"
                     /db_xref="GeneID:116760895"
                     /translation="MGANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGG
                     HPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYH
                     LMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVS
                     QELQDELEEAEDAAASASMASTAAGSRPGRHTKL"
     misc_feature    248..676
                     /gene="DESI2"
                     /note="PPPDE putative peptidase domain; Region:
                     Peptidase_C97; pfam05903"
                     /db_xref="CDD:461775"
ORIGIN      
        1 tgagccggag cgggccgcct gcggtccggc ccggtcggcg cagagggtgt agttggcggc
       61 gcgcgggagc gagtcgcttc ccgatgttcc cgccccggct gccgcgggcc gcgctgtgcg
      121 cttagtgccc ggctccggcc ccctgaggcg tccggggggc ggtgagagcg gcctcggccc
      181 cgcggagacg aagcagctgg agggcgaggc ggcggccgcc gggaggagga tgggggctaa
      241 ccagttagtg gtgctcaacg tgtacgacat gtattggatg aacgaatata cctcatccat
      301 cggaattgga gtttttcatt caggaattga agtatatggc agagaatttg cttatggtgg
      361 ccatccttac cccttttctg gaatatttga aatttcccca ggaaatgctt ctgaactagg
      421 agaaacattt aaatttaaag aagctgttgt tttagggagc accgacttcc tggaagatga
      481 tatagaaaaa attgtagaag aattgggaaa agaatacaaa ggcaacgctt accatttgat
      541 gcataaaaac tgcaaccact tttcttcggc tttatcagag attctttgtg ggaaagagat
      601 tcctcgctgg atcaaccggc ttgcctactt cagctcctgt ataccctttc tccagagttg
      661 cctcccaaag gagtggctca ctcccgcagc cctgcagtct agcgtcagcc aagagctcca
      721 ggacgaactg gaggaagcgg aggatgctgc agcctccgct tccatggcca gcactgccgc
      781 aggctccaga cccgggcgcc acactaaact gtaaatgtct ccaaagtcac gcattcagaa
      841 ctgtctctgg cagttgaata tcactagaga agagtaaaag agtaaatgtc ctctggatat
      901 tttgtatgca aagatggctc tcccccaaat cccagttttt cagctcagga ttatatttgt
      961 aatcaaaaaa aaaaaaaaat cacttggcgc aggagggaga actttgtatg aagctgccct
     1021 ctgtcttttt tacccacttg taaatttgga tttacttctg ttttatataa gctctgttaa
     1081 gttatgttta cagtattttg tatcgctgtt tacaaatctt gcatggactc ctgccaccat
     1141 gaaagaagaa aaccttcatg tcttcaaaaa ttaggcaggt aatctttgta cacttctgac
     1201 aattgcccga gcttcggcat aaataatagg cacacaagaa ggtacttaca cagttatagt
     1261 caccatcacc tgcttaagaa ttgtctttta ggtttgtgtt tgttaccatt ttggtaccag
     1321 ggtgcacaga ggtgaaggag cacacacagc cctgagggct tgggacctcg atctgcgtga
     1381 gaggcgcccg accctgggca cccagcactc cctccactcc aagtggtaca tctcctgagg
     1441 ttcccaccga acggtggctt tcatcccaaa tatctggcca cctccacggg gtggtatact
     1501 cccatgtcag tctggctttg atgcctctga ttctataagt aagatgtttt tcgttaaagg
     1561 tattcttaca agtaacaagt gtttttgcac atgtgttggg ggcttcattt ttattttaat
     1621 atatattgat atcctccctg cagaggattt tgtttgtggg gcaggaatat cctaagtggt
     1681 agccttctga gtagcagtgt gagttgacat tcaactgctt ttaagtcttc aggctacctt
     1741 ttataccaca ccttgaaaac tagagtctaa agtaacactc tccaaaaagt taatactttg
     1801 atattttaaa cactttatgt accgtaccag aaagagtatg ttgcagtttg ttagtttgtt
     1861 atgggagtag tttcacctca taatagaaag cttagtctca ttgaccccct gtggaaaact
     1921 catatttatg tgtcttattc atctttttct ttctctcaaa tgtatgtctc ttacataacc
     1981 tactcgaaga atgaaattgt caccacagat aagtcctcat tagcaaggaa tctgtctgct
     2041 caagtctact ccgagtttga cccttggatg taagagccaa gtcattacat gtcaaattca
     2101 atttttctgc cttaagaatg aatgttctac ataaaatatt ggatgcagtg tataaattat
     2161 ccaaggcagt gacttcagct ttatatatat atatatatat atatatatat atatatatat
     2221 atatatatat atatatatcg ttagttttaa aatcatctac ttttatttaa acttctagat
     2281 tggattgttt gctattgctt tttgtaagga tacatatctt tcagtacact acatttttaa
     2341 cttttccata agctgatttt gagtcatttt atcaaattaa gcacaccctg ttcataggga
     2401 aaataaacct tgggtttgac ctgaggaaaa tgaagccact taacctaatt tatgcttttg
     2461 actgttctgt tgctggaaag gaaagctttt accaattatt ctcagttctt ttagcggggg
     2521 gggggggggg gggggggcag agcacttgtt ttaagagatg tgacagaaag gaatctacga
     2581 tctttatgaa aagttgacct gattcaggtc taaaaatgag attttgaata aaatgcgaag
     2641 actcttgaca gtgaatcagt tcactcaaag aagagtccta tcactaaaac ccaggttagt
     2701 gaaaaatgtt tgatgccatt cgcttgggat tttttgtttt taataatgtg atggattcca
     2761 gttttttcta atccattcaa atagacatga gtttaaatct gtgctacgga cacacgtgaa
     2821 ggagtggcca ttatttaggc acttcttggc gagtagccag gagccttcca cctttgctta
     2881 tccagaatcc agcgcctcag cacacaaatg attttattgt ctttttgttg tactgacttt
     2941 catctgcagc atttggagtt taaaaatagt gttaaggtcc tagtaaaaat aaataatggc
     3001 cctgaggcca attatcgtag aaccaccaga taaaattctg gacgtgagat tgcttgcagt
     3061 ctaatggtac ttgaggttga gaaataaatg tctttacttt agaaaatctc atttaagtca
     3121 gtttgtccac tacagttcaa aattgagggt gaattcagtt aactagcatt tcaccagctt
     3181 tcccttgccc ttggaggaaa agaatcttgt tctcaacctg atctctgtta agaaaaatcc
     3241 tatataaaaa atctggtcat taagatacat gtgatatgat ggcatcagat attctcttcg
     3301 tagttgtaac caagtgaaac acatttctca ttgtgggttg gacagtaata tagtgttaag
     3361 agggtcagaa gctgctggtt tctactgttt gttttcagtg cccttgggtt ttgttttttc
     3421 tttgtttcaa ccctaagaaa ggggcatcag ctttggaaag tgtggcctgt ggaatggtag
     3481 aaggcagtga tgcagcagta aagagagcct ccacttgatg cctgaaatcc agcccactat
     3541 tgttctgacc cacagcaata gtgcaagtta ccttcaccag catttgtaca tagcagggaa
     3601 ttctggtttt caccaatgga tagcattgtg tgtatgagga gattcaaccc tacagacagc
     3661 tgcgggactc tatatccatg gcttctttcc atcacaaaac gggtagaaac tcattcactg
     3721 cttcagggtt ctagtctgtg tgtcttctaa tgggtccatt tctataagat actctgtaat
     3781 tttgatacat gctgtgtttt ctttcagtga ctaagtttaa aaggcttggg ttttgtccag
     3841 caagctggcc atactgccat tgtacccctt tccttcagta tggtttagag tgcagctcag
     3901 tcattagact ttcattgtct cctcagtcaa tacacatctt cactgtttga aaggtgttac
     3961 agctgttcaa gaatcttcat gaacctgagg ataatttctt gtgaagttga atgcaaatgt
     4021 actgtcattc atagtgttta tataaaaaaa aaaaatacca ggaatcttca cttttgc
//
LOCUS       XM_032646450            2050 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus histone deacetylase 1 (HDAC1), transcript
            variant X1, mRNA.
ACCESSION   XM_032646450
VERSION     XM_032646450.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2050
                     /gene="HDAC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 11 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760913"
     CDS             74..1570
                     /gene="HDAC1"
                     /codon_start=1
                     /product="histone deacetylase 1 isoform X1"
                     /protein_id="XP_032502341.1"
                     /db_xref="GeneID:116760913"
                     /translation="MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLN
                     YGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPV
                     FDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI
                     LELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGK
                     GKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNL
                     TIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYF
                     EYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEE
                     SGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKE
                     KDPEEKKGSRRRSSWPEQTSPVLASCQVPHLYPTTPQILYFLFLCVFI"
     misc_feature    83..1195
                     /gene="HDAC1"
                     /note="Histone deacetylase 1 (HDAC1); Region: HDAC1;
                     cd10010"
                     /db_xref="CDD:212534"
     misc_feature    order(491..496,518..523,599..601,605..607,863..865,
                     884..886,974..976,980..982)
                     /gene="HDAC1"
                     /note="active site"
                     /db_xref="CDD:212534"
ORIGIN      
        1 gacgctgagc ggagctgcag gcgggcggga gggtggacgg acagactgac gggagggacg
       61 ggaggcgagc aagatggcgc agactcaggg caccaggagg aaagtctgtt actactacga
      121 cggggatgtt ggaaattact attatggaca aggccaccca atgaagcctc accgaatccg
      181 catgactcac aatttgctcc ttaactatgg tctttaccga aagatggaaa tctatcgccc
      241 tcacaaagcc aatgctgagg agatgaccaa gtaccacagt gatgactaca ttaaattctt
      301 gcgctccatc cgcccagata acatgtctga gtacagcaag cagatgcaga gatttaacgt
      361 tggtgaggac tgtccggtat ttgatggcct ctttgagttc tgtcagctat ctactggtgg
      421 ctctgtggca agtgccgtga aacttaataa gcagcagacg gacatcgctg tgaattgggc
      481 tgggggccta caccatgcaa agaagtccga ggcatctggc ttctgttacg tcaatgatat
      541 cgtcttggcc atcctggaac tgctaaagta tcaccagagg gtgctgtata ttgacattga
      601 tattcaccac ggcgatggcg tggaagaggc cttctatacc acagaccgag tcatgactgt
      661 gtcctttcat aaatatggag agtacttccc aggaactggg gacctacggg atattggggc
      721 tggcaaaggc aagtattatg ctgtgaacta cccgctccga gatgggattg atgatgagtc
      781 ctatgaggcc attttcaagc cggtcatgtc caaagtaatg gagatgttcc agcccagtgc
      841 agtcgtctta cagtgtggct ctgactcctt gtctggtgat cggttaggtt gcttcaattt
      901 gaccatcaaa gggcacgcca agtgtgtgga atttgtgaag agcttcaacc tgcctatgct
      961 gatgctggga ggaggtggct acaccattcg taatgtcgcc cggtgctgga catacgaaac
     1021 agctgtggcc ctggacacag agatccctaa tgagcttcca tacaacgact acttcgaata
     1081 ctttggacca gatttcaaac ttcacatcag tccctccaat atgactaacc agaacactaa
     1141 tgagtacctg gaaaagatca aacagcgact gtttgagaac ctgagaatgc tgccccacgc
     1201 gcctggggtc caaatgcagg ccattcctga ggatgccatt ccagaggaga gtggcgatga
     1261 ggatgaagaa gaccctgaca agcgcatttc aatctgttcc tcggacaaac gaattgcctg
     1321 tgaggaagag ttctccgact ctgacgagga gggagaaggc ggtcgcaaga actcttccaa
     1381 cttcaaaaaa gccaagagag tcaaaacaga ggatgagaaa gagaaagacc cagaagagaa
     1441 gaaagggtca aggaggaggt caagttggcc tgaacagacc tctccagttc tggcttcttg
     1501 ccaagttccc cacctttatc ccacaacccc tcagatttta tattttctat ttctctgtgt
     1561 atttatataa aaatatatta aatataaaca tccccaggga ctagacagga accagggccc
     1621 tgagctcagg gcacacgtgt taggtgagct tttctagtag ctgccttgcc acccatccct
     1681 cccgaactct ttaattttga accataacgg atgccaggtc tgggtggaag ggatacactt
     1741 aaagcaggac aagatcttga agtgcctgct ttgaaaaggt gcccttattg agcattttag
     1801 aaggggtggc tgggtcttca gggactccct gttgttctca ggctcttgtc atcagccatt
     1861 tttagattga ttctgttctc ataccttccc actggccccc agtgagccaa gaaactcaac
     1921 actgcctgcc ctctctgtcc tcccccaatt ctgcagatgg agattggtag tctagtttcc
     1981 tttttgagat actattttca tttttgtgag aatctttgta ataaaatggt acatttctac
     2041 accctcctga
//
LOCUS       XM_032646457            2115 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus histone deacetylase 1 (HDAC1), transcript
            variant X2, mRNA.
ACCESSION   XM_032646457
VERSION     XM_032646457.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2115
                     /gene="HDAC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 9 long SRA reads, 35
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760913"
     CDS             90..1538
                     /gene="HDAC1"
                     /codon_start=1
                     /product="histone deacetylase 1 isoform X2"
                     /protein_id="XP_032502348.1"
                     /db_xref="GeneID:116760913"
                     /translation="MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLN
                     YGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPV
                     FDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI
                     LELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGK
                     GKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNL
                     TIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYF
                     EYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEE
                     SGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKE
                     KDPEEKKEVTEEEKTKEEKQEAKGVKEEVKLA"
     misc_feature    99..1211
                     /gene="HDAC1"
                     /note="Histone deacetylase 1 (HDAC1); Region: HDAC1;
                     cd10010"
                     /db_xref="CDD:212534"
     misc_feature    order(507..512,534..539,615..617,621..623,879..881,
                     900..902,990..992,996..998)
                     /gene="HDAC1"
                     /note="active site"
                     /db_xref="CDD:212534"
ORIGIN      
        1 tctctctgct gggtctgacg ctgagcggag ctgcaggcgg gcgggagggt ggacggacag
       61 actgacggga gggacgggag gcgagcaaga tggcgcagac tcagggcacc aggaggaaag
      121 tctgttacta ctacgacggg gatgttggaa attactatta tggacaaggc cacccaatga
      181 agcctcaccg aatccgcatg actcacaatt tgctccttaa ctatggtctt taccgaaaga
      241 tggaaatcta tcgccctcac aaagccaatg ctgaggagat gaccaagtac cacagtgatg
      301 actacattaa attcttgcgc tccatccgcc cagataacat gtctgagtac agcaagcaga
      361 tgcagagatt taacgttggt gaggactgtc cggtatttga tggcctcttt gagttctgtc
      421 agctatctac tggtggctct gtggcaagtg ccgtgaaact taataagcag cagacggaca
      481 tcgctgtgaa ttgggctggg ggcctacacc atgcaaagaa gtccgaggca tctggcttct
      541 gttacgtcaa tgatatcgtc ttggccatcc tggaactgct aaagtatcac cagagggtgc
      601 tgtatattga cattgatatt caccacggcg atggcgtgga agaggccttc tataccacag
      661 accgagtcat gactgtgtcc tttcataaat atggagagta cttcccagga actggggacc
      721 tacgggatat tggggctggc aaaggcaagt attatgctgt gaactacccg ctccgagatg
      781 ggattgatga tgagtcctat gaggccattt tcaagccggt catgtccaaa gtaatggaga
      841 tgttccagcc cagtgcagtc gtcttacagt gtggctctga ctccttgtct ggtgatcggt
      901 taggttgctt caatttgacc atcaaagggc acgccaagtg tgtggaattt gtgaagagct
      961 tcaacctgcc tatgctgatg ctgggaggag gtggctacac cattcgtaat gtcgcccggt
     1021 gctggacata cgaaacagct gtggccctgg acacagagat ccctaatgag cttccataca
     1081 acgactactt cgaatacttt ggaccagatt tcaaacttca catcagtccc tccaatatga
     1141 ctaaccagaa cactaatgag tacctggaaa agatcaaaca gcgactgttt gagaacctga
     1201 gaatgctgcc ccacgcgcct ggggtccaaa tgcaggccat tcctgaggat gccattccag
     1261 aggagagtgg cgatgaggat gaagaagacc ctgacaagcg catttcaatc tgttcctcgg
     1321 acaaacgaat tgcctgtgag gaagagttct ccgactctga cgaggaggga gaaggcggtc
     1381 gcaagaactc ttccaacttc aaaaaagcca agagagtcaa aacagaggat gagaaagaga
     1441 aagacccaga agagaagaaa gaagtcacag aagaggagaa aaccaaggag gagaagcaag
     1501 aagccaaagg ggtcaaggag gaggtcaagt tggcctgaac agacctctcc agttctggct
     1561 tcttgccaag ttccccacct ttatcccaca acccctcaga ttttatattt tctatttctc
     1621 tgtgtattta tataaaaata tattaaatat aaacatcccc agggactaga caggaaccag
     1681 ggccctgagc tcagggcaca cgtgttaggt gagcttttct agtagctgcc ttgccaccca
     1741 tccctcccga actctttaat tttgaaccat aacggatgcc aggtctgggt ggaagggata
     1801 cacttaaagc aggacaagat cttgaagtgc ctgctttgaa aaggtgccct tattgagcat
     1861 tttagaaggg gtggctgggt cttcagggac tccctgttgt tctcaggctc ttgtcatcag
     1921 ccatttttag attgattctg ttctcatacc ttcccactgg cccccagtga gccaagaaac
     1981 tcaacactgc ctgccctctc tgtcctcccc caattctgca gatggagatt ggtagtctag
     2041 tttccttttt gagatactat tttcattttt gtgagaatct ttgtaataaa atggtacatt
     2101 tctacaccct cctga
//
LOCUS       XM_032646466            2044 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus histone deacetylase 1 (HDAC1), transcript
            variant X3, mRNA.
ACCESSION   XM_032646466
VERSION     XM_032646466.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2044
                     /gene="HDAC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 14 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760913"
     CDS             43..1467
                     /gene="HDAC1"
                     /codon_start=1
                     /product="histone deacetylase 1 isoform X3"
                     /protein_id="XP_032502357.1"
                     /db_xref="GeneID:116760913"
                     /translation="MLSVCRRQGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKME
                     IYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFC
                     QLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQ
                     RVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNY
                     PLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKC
                     VEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFK
                     LHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEED
                     PDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKE
                     VTEEEKTKEEKQEAKGVKEEVKLA"
     misc_feature    67..1140
                     /gene="HDAC1"
                     /note="Arginase-like and histone-like hydrolases; Region:
                     Arginase_HDAC; cl17011"
                     /db_xref="CDD:450134"
     misc_feature    order(439..441,544..546,550..552,556..558,802..804,
                     808..810,919..921)
                     /gene="HDAC1"
                     /note="active site"
                     /db_xref="CDD:212513"
     misc_feature    order(544..546,550..552,808..810)
                     /gene="HDAC1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:212513"
ORIGIN      
        1 aaggaagaag acaaggatcc cgtttctggt ttgggcagtt tgatgctgag tgtttgtaga
       61 aggcaggggg atgttggaaa ttactattat ggacaaggcc acccaatgaa gcctcaccga
      121 atccgcatga ctcacaattt gctccttaac tatggtcttt accgaaagat ggaaatctat
      181 cgccctcaca aagccaatgc tgaggagatg accaagtacc acagtgatga ctacattaaa
      241 ttcttgcgct ccatccgccc agataacatg tctgagtaca gcaagcagat gcagagattt
      301 aacgttggtg aggactgtcc ggtatttgat ggcctctttg agttctgtca gctatctact
      361 ggtggctctg tggcaagtgc cgtgaaactt aataagcagc agacggacat cgctgtgaat
      421 tgggctgggg gcctacacca tgcaaagaag tccgaggcat ctggcttctg ttacgtcaat
      481 gatatcgtct tggccatcct ggaactgcta aagtatcacc agagggtgct gtatattgac
      541 attgatattc accacggcga tggcgtggaa gaggccttct ataccacaga ccgagtcatg
      601 actgtgtcct ttcataaata tggagagtac ttcccaggaa ctggggacct acgggatatt
      661 ggggctggca aaggcaagta ttatgctgtg aactacccgc tccgagatgg gattgatgat
      721 gagtcctatg aggccatttt caagccggtc atgtccaaag taatggagat gttccagccc
      781 agtgcagtcg tcttacagtg tggctctgac tccttgtctg gtgatcggtt aggttgcttc
      841 aatttgacca tcaaagggca cgccaagtgt gtggaatttg tgaagagctt caacctgcct
      901 atgctgatgc tgggaggagg tggctacacc attcgtaatg tcgcccggtg ctggacatac
      961 gaaacagctg tggccctgga cacagagatc cctaatgagc ttccatacaa cgactacttc
     1021 gaatactttg gaccagattt caaacttcac atcagtccct ccaatatgac taaccagaac
     1081 actaatgagt acctggaaaa gatcaaacag cgactgtttg agaacctgag aatgctgccc
     1141 cacgcgcctg gggtccaaat gcaggccatt cctgaggatg ccattccaga ggagagtggc
     1201 gatgaggatg aagaagaccc tgacaagcgc atttcaatct gttcctcgga caaacgaatt
     1261 gcctgtgagg aagagttctc cgactctgac gaggagggag aaggcggtcg caagaactct
     1321 tccaacttca aaaaagccaa gagagtcaaa acagaggatg agaaagagaa agacccagaa
     1381 gagaagaaag aagtcacaga agaggagaaa accaaggagg agaagcaaga agccaaaggg
     1441 gtcaaggagg aggtcaagtt ggcctgaaca gacctctcca gttctggctt cttgccaagt
     1501 tccccacctt tatcccacaa cccctcagat tttatatttt ctatttctct gtgtatttat
     1561 ataaaaatat attaaatata aacatcccca gggactagac aggaaccagg gccctgagct
     1621 cagggcacac gtgttaggtg agcttttcta gtagctgcct tgccacccat ccctcccgaa
     1681 ctctttaatt ttgaaccata acggatgcca ggtctgggtg gaagggatac acttaaagca
     1741 ggacaagatc ttgaagtgcc tgctttgaaa aggtgccctt attgagcatt ttagaagggg
     1801 tggctgggtc ttcagggact ccctgttgtt ctcaggctct tgtcatcagc catttttaga
     1861 ttgattctgt tctcatacct tcccactggc ccccagtgag ccaagaaact caacactgcc
     1921 tgccctctct gtcctccccc aattctgcag atggagattg gtagtctagt ttcctttttg
     1981 agatactatt ttcatttttg tgagaatctt tgtaataaaa tggtacattt ctacaccctc
     2041 ctga
//
LOCUS       XM_032646475            1963 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus histone deacetylase 1 (HDAC1), transcript
            variant X4, mRNA.
ACCESSION   XM_032646475
VERSION     XM_032646475.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1963
                     /gene="HDAC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 8 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760913"
     CDS             127..1386
                     /gene="HDAC1"
                     /codon_start=1
                     /product="histone deacetylase 1 isoform X4"
                     /protein_id="XP_032502366.1"
                     /db_xref="GeneID:116760913"
                     /translation="MTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLF
                     EFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLK
                     YHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYA
                     VNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGH
                     AKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGP
                     DFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDED
                     EEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEE
                     KKEVTEEEKTKEEKQEAKGVKEEVKLA"
     misc_feature    127..1059
                     /gene="HDAC1"
                     /note="Arginase-like and histone-like hydrolases; Region:
                     Arginase_HDAC; cl17011"
                     /db_xref="CDD:450134"
     misc_feature    order(358..360,463..465,469..471,475..477,721..723,
                     727..729,838..840)
                     /gene="HDAC1"
                     /note="active site"
                     /db_xref="CDD:212534"
     misc_feature    order(463..465,469..471,727..729)
                     /gene="HDAC1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:212534"
ORIGIN      
        1 ggcgggaggg tggacggaca gactgacggg agggacggga ggcgagcaag atggcgcaga
       61 ctcagggcac caggaggaaa gtctgttact actacgacgc gccctcacaa agccaatgct
      121 gaggagatga ccaagtacca cagtgatgac tacattaaat tcttgcgctc catccgccca
      181 gataacatgt ctgagtacag caagcagatg cagagattta acgttggtga ggactgtccg
      241 gtatttgatg gcctctttga gttctgtcag ctatctactg gtggctctgt ggcaagtgcc
      301 gtgaaactta ataagcagca gacggacatc gctgtgaatt gggctggggg cctacaccat
      361 gcaaagaagt ccgaggcatc tggcttctgt tacgtcaatg atatcgtctt ggccatcctg
      421 gaactgctaa agtatcacca gagggtgctg tatattgaca ttgatattca ccacggcgat
      481 ggcgtggaag aggccttcta taccacagac cgagtcatga ctgtgtcctt tcataaatat
      541 ggagagtact tcccaggaac tggggaccta cgggatattg gggctggcaa aggcaagtat
      601 tatgctgtga actacccgct ccgagatggg attgatgatg agtcctatga ggccattttc
      661 aagccggtca tgtccaaagt aatggagatg ttccagccca gtgcagtcgt cttacagtgt
      721 ggctctgact ccttgtctgg tgatcggtta ggttgcttca atttgaccat caaagggcac
      781 gccaagtgtg tggaatttgt gaagagcttc aacctgccta tgctgatgct gggaggaggt
      841 ggctacacca ttcgtaatgt cgcccggtgc tggacatacg aaacagctgt ggccctggac
      901 acagagatcc ctaatgagct tccatacaac gactacttcg aatactttgg accagatttc
      961 aaacttcaca tcagtccctc caatatgact aaccagaaca ctaatgagta cctggaaaag
     1021 atcaaacagc gactgtttga gaacctgaga atgctgcccc acgcgcctgg ggtccaaatg
     1081 caggccattc ctgaggatgc cattccagag gagagtggcg atgaggatga agaagaccct
     1141 gacaagcgca tttcaatctg ttcctcggac aaacgaattg cctgtgagga agagttctcc
     1201 gactctgacg aggagggaga aggcggtcgc aagaactctt ccaacttcaa aaaagccaag
     1261 agagtcaaaa cagaggatga gaaagagaaa gacccagaag agaagaaaga agtcacagaa
     1321 gaggagaaaa ccaaggagga gaagcaagaa gccaaagggg tcaaggagga ggtcaagttg
     1381 gcctgaacag acctctccag ttctggcttc ttgccaagtt ccccaccttt atcccacaac
     1441 ccctcagatt ttatattttc tatttctctg tgtatttata taaaaatata ttaaatataa
     1501 acatccccag ggactagaca ggaaccaggg ccctgagctc agggcacacg tgttaggtga
     1561 gcttttctag tagctgcctt gccacccatc cctcccgaac tctttaattt tgaaccataa
     1621 cggatgccag gtctgggtgg aagggataca cttaaagcag gacaagatct tgaagtgcct
     1681 gctttgaaaa ggtgccctta ttgagcattt tagaaggggt ggctgggtct tcagggactc
     1741 cctgttgttc tcaggctctt gtcatcagcc atttttagat tgattctgtt ctcatacctt
     1801 cccactggcc cccagtgagc caagaaactc aacactgcct gccctctctg tcctccccca
     1861 attctgcaga tggagattgg tagtctagtt tcctttttga gatactattt tcatttttgt
     1921 gagaatcttt gtaataaaat ggtacatttc tacaccctcc tga
//
LOCUS       XM_032646488             186 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus metallothionein-1E-like (LOC116760933),
            mRNA.
ACCESSION   XM_032646488
VERSION     XM_032646488.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..186
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..186
                     /gene="LOC116760933"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 53 Proteins"
                     /db_xref="GeneID:116760933"
     CDS             1..186
                     /gene="LOC116760933"
                     /codon_start=1
                     /product="metallothionein-1E-like"
                     /protein_id="XP_032502379.1"
                     /db_xref="GeneID:116760933"
                     /translation="MDPNCSCTTGGSCTCASSCKCKECKCTSCKKSCCSCCPVSYAKC
                     AQGCVFKGAADEGSCCA"
     misc_feature    10..183
                     /gene="LOC116760933"
                     /note="Metallothionein; Region: Metallothio; cl19543"
                     /db_xref="CDD:418600"
ORIGIN      
        1 atggatccca actgctcctg caccacaggt ggatcctgca cgtgtgccag ctcctgcaaa
       61 tgcaaagagt gcaaatgcac ctcctgcaag aagagctgct gctcctgctg ccctgtgagc
      121 tatgccaagt gtgcccaggg ctgtgtcttc aaaggggccg cggacgaggg cagctgctgc
      181 gcctga
//
LOCUS       XM_032646502            1591 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus enoyl-CoA hydratase domain containing 2
            (ECHDC2), transcript variant X1, mRNA.
ACCESSION   XM_032646502
VERSION     XM_032646502.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1591
                     /gene="ECHDC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 1 long SRA read, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116760938"
     CDS             126..1016
                     /gene="ECHDC2"
                     /codon_start=1
                     /product="enoyl-CoA hydratase domain-containing protein 2,
                     mitochondrial isoform X1"
                     /protein_id="XP_032502393.1"
                     /db_xref="GeneID:116760938"
                     /translation="MLRALTSALRLPRPRRPLEARGCAANLAAANREIQVCALAGPDQ
                     GITEILMNRPSARNALGNVFVSELLEALAQLREDQQVRVLIFRSGVKGVFCAGADLKE
                     REQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSA
                     VMGLIETTRGLFPGAGGTQRLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAVAQN
                     EEGNAAYHRARALAQEILPQAPTAVRLGKVAIDRGTEVDIASGMAIEGICYAQNIPTR
                     DRLEGMAAFREKRPPRFVGE"
     misc_feature    249..1013
                     /gene="ECHDC2"
                     /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
                     superfamily. This superfamily contains a diverse set of
                     enzymes including enoyl-CoA hydratase, napthoate synthase,
                     methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
                     dehydratase, and dienoyl-CoA isomerase; Region:
                     crotonase-like; cl23717"
                     /db_xref="CDD:474030"
     misc_feature    order(294..296,300..302,399..401,411..425,540..542,
                     546..554,618..623,630..632)
                     /gene="ECHDC2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:119339"
     misc_feature    order(417..419,552..554)
                     /gene="ECHDC2"
                     /note="oxyanion hole (OAH) forming residues [active]"
                     /db_xref="CDD:119339"
     misc_feature    order(492..494,516..518,579..590,624..635,651..653,
                     657..665,669..674,687..692,696..701,705..710,717..719,
                     750..752,759..761,816..818,825..830)
                     /gene="ECHDC2"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119339"
ORIGIN      
        1 gccgcgccgg cctctcggcc cataggcggc gcggtttacg aaggcctggg gctgagcggc
       61 aagatttcag ccggaaagga gggggtggtg gaggggccga gaggcacctt cccagactgg
      121 tccgaatgct gcgcgccctg accagcgccc tgcgccttcc gagaccccgg aggccccttg
      181 aggcccgtgg ctgcgccgcc aatctcgcgg ccgcaaaccg cgagatccaa gtgtgcgctc
      241 tggcgggtcc agaccaagga atcactgaga ttttgatgaa cagaccaagc gcccgcaatg
      301 ccctggggaa cgtcttcgtt agtgagctgc tggaagctct ggcccaactg cgggaggacc
      361 agcaagtgcg tgtcctgatc ttcagaagtg gagtgaaggg tgtattctgt gcaggtgcag
      421 acctgaagga gcgggagcag atgagtgagg cggaggtggg ggtctttgtc cagcggctcc
      481 gaggcctgat gaatgagatt gcagccttcc ctgcgcccac cattgcagct atggatgggt
      541 ttgccttagg tggaggcctg gaactggcct tggcctgtga cctccgagtg gcagcttcct
      601 cagctgtcat ggggctgatt gagaccaccc gaggactctt cccaggagca ggagggactc
      661 agaggctgcc tcgatgcctg ggggtggccc tggcgaagga gctcatcttc acaggccgac
      721 gactgagcgg ggcccaggcc caggctctgg ggctggtgaa ccatgctgtg gcccagaatg
      781 aggagggcaa cgccgcctac caccgggcac gagcactggc ccaggagatc ctgccccagg
      841 cccccactgc tgtgcggctg ggcaaagtag ccattgaccg aggaacagag gtggacattg
      901 catcagggat ggccattgaa gggatatgct atgcccagaa catcccgacc cgggatcggc
      961 tggaaggcat ggctgccttc agggagaagc ggccccctag atttgttggc gagtgacttc
     1021 ctttgaacct taagcatggg agatgcacac cttacaggga aggatccaga aggaaaacgt
     1081 gcagcgcgcc cgccctcaac atttcacctc tctaggcttc agtttcctca caaggacgat
     1141 gatcgatata gaatgactgg cacggtgcct ggcactaagg tgctgactat gccacctacc
     1201 gctaccttcg tcattcctca cccaggctag acaatcactg gcgtcgggtt ggctttggag
     1261 aatacctgtc tctccctaat agaacgatca actaaggaca aaacagaccc ctctgggcct
     1321 ttatatcgct ggcactcaag cctgacctct gcatctcagt tattaggtgc tcaccagaga
     1381 tgacaggagg ttgtaagaac cagccccaac tgccctgttt cttcctctgt acaacagaga
     1441 taataaggaa accctggcag tggttgaata ggcccagctc tctgccagtt actcactgta
     1501 tgcctcagcc tcctcatcta taatgaaact gttgggagga ctaaacaaat aataaaacgc
     1561 ctgatgttca ataaacgtga gttattattc a
//
LOCUS       XM_032646511            1598 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus enoyl-CoA hydratase domain containing 2
            (ECHDC2), transcript variant X2, mRNA.
ACCESSION   XM_032646511
VERSION     XM_032646511.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1598
                     /gene="ECHDC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760938"
     CDS             132..1019
                     /gene="ECHDC2"
                     /codon_start=1
                     /product="enoyl-CoA hydratase domain-containing protein 2,
                     mitochondrial isoform X2"
                     /protein_id="XP_032502402.1"
                     /db_xref="GeneID:116760938"
                     /translation="MLRALTSALRLPRPRRPLEARGCAANLAAANREIQVCALAGPDQ
                     GITEILMNRPSARNALGNVFVSELLEALAQLREDQQVRVLIFRSGVKGVFCAGADLKE
                     REQMSEAEVGVFVQRLRGLMNEIAFPAPTIAAMDGFALGGGLELALACDLRVAASSAV
                     MGLIETTRGLFPGAGGTQRLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAVAQNE
                     EGNAAYHRARALAQEILPQAPTAVRLGKVAIDRGTEVDIASGMAIEGICYAQNIPTRD
                     RLEGMAAFREKRPPRFVGE"
     misc_feature    255..1016
                     /gene="ECHDC2"
                     /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
                     superfamily. This superfamily contains a diverse set of
                     enzymes including enoyl-CoA hydratase, napthoate synthase,
                     methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
                     dehydratase, and dienoyl-CoA isomerase; Region:
                     crotonase-like; cl23717"
                     /db_xref="CDD:474030"
     misc_feature    order(300..302,306..308,405..407,417..431,543..545,
                     549..557,621..626,633..635)
                     /gene="ECHDC2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:119339"
     misc_feature    order(423..425,555..557)
                     /gene="ECHDC2"
                     /note="oxyanion hole (OAH) forming residues [active]"
                     /db_xref="CDD:119339"
     misc_feature    order(498..500,519..521,582..593,627..638,654..656,
                     660..668,672..677,690..695,699..704,708..713,720..722,
                     753..755,762..764,819..821,828..833)
                     /gene="ECHDC2"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119339"
ORIGIN      
        1 cagagagccg cgccggcctc tcggcccata ggcggcgcgg tttacgaagg cctggggctg
       61 agcggcaaga tttcagccgg aaaggagggg gtggtggagg ggccgagagg caccttccca
      121 gactggtccg aatgctgcgc gccctgacca gcgccctgcg ccttccgaga ccccggaggc
      181 cccttgaggc ccgtggctgc gccgccaatc tcgcggccgc aaaccgcgag atccaagtgt
      241 gcgctctggc gggtccagac caaggaatca ctgagatttt gatgaacaga ccaagcgccc
      301 gcaatgccct ggggaacgtc ttcgttagtg agctgctgga agctctggcc caactgcggg
      361 aggaccagca agtgcgtgtc ctgatcttca gaagtggagt gaagggtgta ttctgtgcag
      421 gtgcagacct gaaggagcgg gagcagatga gtgaggcgga ggtgggggtc tttgtccagc
      481 ggctccgagg cctgatgaat gagattgcct tccctgcgcc caccattgca gctatggatg
      541 ggtttgcctt aggtggaggc ctggaactgg ccttggcctg tgacctccga gtggcagctt
      601 cctcagctgt catggggctg attgagacca cccgaggact cttcccagga gcaggaggga
      661 ctcagaggct gcctcgatgc ctgggggtgg ccctggcgaa ggagctcatc ttcacaggcc
      721 gacgactgag cggggcccag gcccaggctc tggggctggt gaaccatgct gtggcccaga
      781 atgaggaggg caacgccgcc taccaccggg cacgagcact ggcccaggag atcctgcccc
      841 aggcccccac tgctgtgcgg ctgggcaaag tagccattga ccgaggaaca gaggtggaca
      901 ttgcatcagg gatggccatt gaagggatat gctatgccca gaacatcccg acccgggatc
      961 ggctggaagg catggctgcc ttcagggaga agcggccccc tagatttgtt ggcgagtgac
     1021 ttcctttgaa ccttaagcat gggagatgca caccttacag ggaaggatcc agaaggaaaa
     1081 cgtgcagcgc gcccgccctc aacatttcac ctctctaggc ttcagtttcc tcacaaggac
     1141 gatgatcgat atagaatgac tggcacggtg cctggcacta aggtgctgac tatgccacct
     1201 accgctacct tcgtcattcc tcacccaggc tagacaatca ctggcgtcgg gttggctttg
     1261 gagaatacct gtctctccct aatagaacga tcaactaagg acaaaacaga cccctctggg
     1321 cctttatatc gctggcactc aagcctgacc tctgcatctc agttattagg tgctcaccag
     1381 agatgacagg aggttgtaag aaccagcccc aactgccctg tttcttcctc tgtacaacag
     1441 agataataag gaaaccctgg cagtggttga ataggcccag ctctctgcca gttactcact
     1501 gtatgcctca gcctcctcat ctataatgaa actgttggga ggactaaaca aataataaaa
     1561 cgcctgatgt tcaataaacg tgagttatta ttcatgta
//
LOCUS       XM_032646521            1516 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus enoyl-CoA hydratase domain containing 2
            (ECHDC2), transcript variant X3, mRNA.
ACCESSION   XM_032646521
VERSION     XM_032646521.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1516
                     /gene="ECHDC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760938"
     CDS             134..937
                     /gene="ECHDC2"
                     /codon_start=1
                     /product="enoyl-CoA hydratase domain-containing protein 2,
                     mitochondrial isoform X3"
                     /protein_id="XP_032502412.1"
                     /db_xref="GeneID:116760938"
                     /translation="MLRALTSALRLPRPRRPLEARGCAANLAAANREIQVCALAGPDQ
                     GITEILMNRPSARNALGNVFVSELLEALAQLREDQQVRVLIFRSGVKGVFCAAAFPAP
                     TIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLFPGAGGTQRLPRCLGVAL
                     AKELIFTGRRLSGAQAQALGLVNHAVAQNEEGNAAYHRARALAQEILPQAPTAVRLGK
                     VAIDRGTEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREKRPPRFVGE"
     misc_feature    257..934
                     /gene="ECHDC2"
                     /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
                     superfamily. This superfamily contains a diverse set of
                     enzymes including enoyl-CoA hydratase, napthoate synthase,
                     methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
                     dehydratase, and dienoyl-CoA isomerase; Region:
                     crotonase-like; cl23717"
                     /db_xref="CDD:474030"
     misc_feature    order(437..439,500..511,545..556,572..574,578..586,
                     590..595,608..613,617..622,626..631,638..640,671..673,
                     680..682,737..739,746..751)
                     /gene="ECHDC2"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119339"
ORIGIN      
        1 ctcagagagc cgcgccggcc tctcggccca taggcggcgc ggtttacgaa ggcctggggc
       61 tgagcggcaa gatttcagcc ggaaaggagg gggtggtgga ggggccgaga ggcaccttcc
      121 cagactggtc cgaatgctgc gcgccctgac cagcgccctg cgccttccga gaccccggag
      181 gccccttgag gcccgtggct gcgccgccaa tctcgcggcc gcaaaccgcg agatccaagt
      241 gtgcgctctg gcgggtccag accaaggaat cactgagatt ttgatgaaca gaccaagcgc
      301 ccgcaatgcc ctggggaacg tcttcgttag tgagctgctg gaagctctgg cccaactgcg
      361 ggaggaccag caagtgcgtg tcctgatctt cagaagtgga gtgaagggtg tattctgtgc
      421 agcagccttc cctgcgccca ccattgcagc tatggatggg tttgccttag gtggaggcct
      481 ggaactggcc ttggcctgtg acctccgagt ggcagcttcc tcagctgtca tggggctgat
      541 tgagaccacc cgaggactct tcccaggagc aggagggact cagaggctgc ctcgatgcct
      601 gggggtggcc ctggcgaagg agctcatctt cacaggccga cgactgagcg gggcccaggc
      661 ccaggctctg gggctggtga accatgctgt ggcccagaat gaggagggca acgccgccta
      721 ccaccgggca cgagcactgg cccaggagat cctgccccag gcccccactg ctgtgcggct
      781 gggcaaagta gccattgacc gaggaacaga ggtggacatt gcatcaggga tggccattga
      841 agggatatgc tatgcccaga acatcccgac ccgggatcgg ctggaaggca tggctgcctt
      901 cagggagaag cggcccccta gatttgttgg cgagtgactt cctttgaacc ttaagcatgg
      961 gagatgcaca ccttacaggg aaggatccag aaggaaaacg tgcagcgcgc ccgccctcaa
     1021 catttcacct ctctaggctt cagtttcctc acaaggacga tgatcgatat agaatgactg
     1081 gcacggtgcc tggcactaag gtgctgacta tgccacctac cgctaccttc gtcattcctc
     1141 acccaggcta gacaatcact ggcgtcgggt tggctttgga gaatacctgt ctctccctaa
     1201 tagaacgatc aactaaggac aaaacagacc cctctgggcc tttatatcgc tggcactcaa
     1261 gcctgacctc tgcatctcag ttattaggtg ctcaccagag atgacaggag gttgtaagaa
     1321 ccagccccaa ctgccctgtt tcttcctctg tacaacagag ataataagga aaccctggca
     1381 gtggttgaat aggcccagct ctctgccagt tactcactgt atgcctcagc ctcctcatct
     1441 ataatgaaac tgttgggagg actaaacaaa taataaaacg cctgatgttc aataaacgtg
     1501 agttattatt catgta
//
LOCUS       XM_032646531            1421 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus enoyl-CoA hydratase domain containing 2
            (ECHDC2), transcript variant X4, mRNA.
ACCESSION   XM_032646531
VERSION     XM_032646531.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1421
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1421
                     /gene="ECHDC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116760938"
     CDS             132..842
                     /gene="ECHDC2"
                     /codon_start=1
                     /product="enoyl-CoA hydratase domain-containing protein 2,
                     mitochondrial isoform X4"
                     /protein_id="XP_032502422.1"
                     /db_xref="GeneID:116760938"
                     /translation="MLRALTSALRLPRPRRPLEARGCAANLAAANREIQVCALAGPDQ
                     GITEILMNRPSARNALGNVFVSELLEALAQLREDQQVRVLIFRSGVKGVFCAASSAVM
                     GLIETTRGLFPGAGGTQRLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAVAQNEE
                     GNAAYHRARALAQEILPQAPTAVRLGKVAIDRGTEVDIASGMAIEGICYAQNIPTRDR
                     LEGMAAFREKRPPRFVGE"
     misc_feature    255..839
                     /gene="ECHDC2"
                     /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
                     superfamily. This superfamily contains a diverse set of
                     enzymes including enoyl-CoA hydratase, napthoate synthase,
                     methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
                     dehydratase, and dienoyl-CoA isomerase; Region:
                     crotonase-like; cl23717"
                     /db_xref="CDD:474030"
ORIGIN      
        1 cagagagccg cgccggcctc tcggcccata ggcggcgcgg tttacgaagg cctggggctg
       61 agcggcaaga tttcagccgg aaaggagggg gtggtggagg ggccgagagg caccttccca
      121 gactggtccg aatgctgcgc gccctgacca gcgccctgcg ccttccgaga ccccggaggc
      181 cccttgaggc ccgtggctgc gccgccaatc tcgcggccgc aaaccgcgag atccaagtgt
      241 gcgctctggc gggtccagac caaggaatca ctgagatttt gatgaacaga ccaagcgccc
      301 gcaatgccct ggggaacgtc ttcgttagtg agctgctgga agctctggcc caactgcggg
      361 aggaccagca agtgcgtgtc ctgatcttca gaagtggagt gaagggtgta ttctgtgcag
      421 cttcctcagc tgtcatgggg ctgattgaga ccacccgagg actcttccca ggagcaggag
      481 ggactcagag gctgcctcga tgcctggggg tggccctggc gaaggagctc atcttcacag
      541 gccgacgact gagcggggcc caggcccagg ctctggggct ggtgaaccat gctgtggccc
      601 agaatgagga gggcaacgcc gcctaccacc gggcacgagc actggcccag gagatcctgc
      661 cccaggcccc cactgctgtg cggctgggca aagtagccat tgaccgagga acagaggtgg
      721 acattgcatc agggatggcc attgaaggga tatgctatgc ccagaacatc ccgacccggg
      781 atcggctgga aggcatggct gccttcaggg agaagcggcc ccctagattt gttggcgagt
      841 gacttccttt gaaccttaag catgggagat gcacacctta cagggaagga tccagaagga
      901 aaacgtgcag cgcgcccgcc ctcaacattt cacctctcta ggcttcagtt tcctcacaag
      961 gacgatgatc gatatagaat gactggcacg gtgcctggca ctaaggtgct gactatgcca
     1021 cctaccgcta ccttcgtcat tcctcaccca ggctagacaa tcactggcgt cgggttggct
     1081 ttggagaata cctgtctctc cctaatagaa cgatcaacta aggacaaaac agacccctct
     1141 gggcctttat atcgctggca ctcaagcctg acctctgcat ctcagttatt aggtgctcac
     1201 cagagatgac aggaggttgt aagaaccagc cccaactgcc ctgtttcttc ctctgtacaa
     1261 cagagataat aaggaaaccc tggcagtggt tgaataggcc cagctctctg ccagttactc
     1321 actgtatgcc tcagcctcct catctataat gaaactgttg ggaggactaa acaaataata
     1381 aaacgcctga tgttcaataa acgtgagtta ttattcatgt a
//
LOCUS       XM_032646545            1377 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrix metallopeptidase 23B (MMP23B),
            mRNA.
ACCESSION   XM_032646545
VERSION     XM_032646545.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1377
                     /gene="MMP23B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 7 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760950"
     CDS             148..1329
                     /gene="MMP23B"
                     /codon_start=1
                     /product="matrix metalloproteinase-23"
                     /protein_id="XP_032502436.1"
                     /db_xref="GeneID:116760950"
                     /translation="MGRGACVPSAASGAHDRARLLGAVLGALCLLPTLVLLARPGALG
                     NRPVARAAQGDAVPPTAGVLTTPSLGPPQPPAPRRRRYTLTPTRLHWDHFNLTYRILS
                     FPRNLLSPRETRRGLAAAFRMWSDVSPFSFREVAPEQPSDLRIGFYPVNHTDCLVSPT
                     HHCFDGPTGELAHAFFPPHGGIHFDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGH
                     ALGLMHSQHGRALMHLNATLRGWKALSQDELWGLHRLYGCLDRLFVCASWARRGFCDA
                     RQRLMKRLCPSSCDFCYEFPFPTVAATAPPPRTKTRLVPEGRNVTFRCGQKILHKKGK
                     VYWYKDQEPLEFSYPGYLALGDAHLSIIANAINEGTYTCVVRRRQHVLSTYSWRVRLR
                     S"
     misc_feature    418..918
                     /gene="MMP23B"
                     /note="Zinc-dependent metalloprotease, matrix
                     metalloproteinase (MMP) sub-family. MMPs are responsible
                     for a great deal of pericellular proteolysis of
                     extracellular matrix and cell surface molecules, playing
                     crucial roles in morphogenesis, cell fate...; Region:
                     ZnMc_MMP; cd04278"
                     /db_xref="CDD:239805"
     misc_feature    order(577..579,631..633,652..672,688..690,787..792,
                     817..819,847..855)
                     /gene="MMP23B"
                     /note="TIMP-binding surface [active]"
                     /db_xref="CDD:239805"
     misc_feature    order(787..792,799..801,817..819)
                     /gene="MMP23B"
                     /note="active site"
                     /db_xref="CDD:239805"
     misc_feature    919..1023
                     /gene="MMP23B"
                     /note="ShK toxin domain; Region: ShKT; smart00254"
                     /db_xref="CDD:214586"
     misc_feature    1039..1275
                     /gene="MMP23B"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
ORIGIN      
        1 tggaggtgtc aggggtgctc ccgacagcag gcggccagct ggttcccttc ggggcagccg
       61 cgcgccctcc ccctcagggc tgtaacccga gccgccgccg ccgcgctgcc ccgccgcctg
      121 agccccgaca gcgattccgc aggcgccatg ggccgcgggg cctgcgtccc ctcagcggcg
      181 tcgggggccc acgaccgggc ccgccttctc ggagccgtgc tgggcgcgct gtgcctcctc
      241 cccacgctcg tgctgctggc ccggccgggg gccctgggga accggcccgt ggcgagagca
      301 gcgcagggag atgctgtgcc cccgaccgcg ggtgtgctca ccaccccaag ccttggcccg
      361 ccgcaacccc cagcgccccg cagacgccgc tacacgctga ccccgacccg gctgcactgg
      421 gaccacttca acctcacata caggatcctc tctttcccga ggaacctgct cagccccaga
      481 gagacccggc ggggcctggc cgccgccttc cgcatgtgga gtgacgtgtc ccccttcagc
      541 ttccgcgagg tggcccccga gcagcccagc gacctccgca taggcttcta cccggtcaac
      601 cacacggact gcctggtctc cccgacgcac cactgcttcg acggccccac gggcgagctg
      661 gcccacgcct tcttcccccc gcacggcggc atccactttg acgacagcga gtactgggtc
      721 ctgggcccca cacgctacag ctggaagaaa ggcgtgtggc tcaccgacct ggtgcacgtg
      781 gcggcccacg agatcggcca cgcgctgggc ctgatgcact cgcagcacgg ccgggcgctc
      841 atgcacctca acgccacgct gcgtggctgg aaggcgctgt cgcaggacga gctgtggggg
      901 ttgcaccggc tctacggctg cctggaccgg ctgttcgtgt gcgcgtcctg ggcgcggagg
      961 ggtttctgcg acgcccgcca gaggctcatg aagaggctgt gtccgagcag ctgcgacttc
     1021 tgctacgagt tccccttccc cacggtggct gccaccgcac cgccccccag gaccaaaacc
     1081 cggctggtgc ccgagggcag gaatgtgacc ttccgctgcg gccagaagat cctccacaag
     1141 aaaggcaaag tgtactggta caaggaccag gagcccctgg agttctccta ccccggctac
     1201 ctggcgctgg gcgacgcaca cctgagcatc atcgccaacg ccatcaacga gggcacctac
     1261 acgtgcgtgg tgcgccggcg gcagcacgtg ctcagcacct actcctggcg cgtccgcctg
     1321 cggagctgaa cgccgcacgc agggctgagg acgctgataa agcactttct ctctcaa
//
LOCUS       XM_032646559            6858 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 9-like (LOC116760957),
            transcript variant X1, mRNA.
ACCESSION   XM_032646559
VERSION     XM_032646559.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6858
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6858
                     /gene="LOC116760957"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116760957"
     CDS             46..1119
                     /gene="LOC116760957"
                     /codon_start=1
                     /product="SLAM family member 9-like isoform X1"
                     /protein_id="XP_032502450.1"
                     /db_xref="GeneID:116760957"
                     /translation="MGPCSEDPHLCWASRLLGFTSLLLSVCCPGVKSSGTHGSGVQDS
                     GAHVPLHRVRGGSVSFNVTRKQEAHLEEVTWGFGPDSNYRVLLRVSAAAAAPTWVSLQ
                     DKYQQRVHVPSILSLNIENLTSEDSGLYRARASFTGGIELNQVFPLTVYEPVPLPQIL
                     SKLLSVTPGWCNVTLECRASGATEDLKVTWQSKGLPRELEQSVTLGPAPNSWTLPVNL
                     PLRQPSASFTCVVSNQVDQKTATLDLGEVCVHDSQGQVSADPLPGILGAVVAVLLILG
                     GGLYLWKTREKKKKMETGRGTELQEDYRDNDSGIQYAELSQQESRKGTRKGIGERHLE
                     EKEPVNTVYSEVHKPESEAMKII"
     misc_feature    208..498
                     /gene="LOC116760957"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    217..231
                     /gene="LOC116760957"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    259..273
                     /gene="LOC116760957"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    388..402
                     /gene="LOC116760957"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    430..447
                     /gene="LOC116760957"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    472..483
                     /gene="LOC116760957"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    562..768
                     /gene="LOC116760957"
                     /note="Immunoglobulin domain; Region: Ig; cd00096"
                     /db_xref="CDD:409353"
     misc_feature    562..576
                     /gene="LOC116760957"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    604..618
                     /gene="LOC116760957"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    679..693
                     /gene="LOC116760957"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    721..738
                     /gene="LOC116760957"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ctagaccttt cttccacagc tgcacaggcg ggcaggcagc ctgtgatggg gccctgctca
       61 gaagaccccc atctctgctg ggcctcccgg ctcctgggat tcaccagcct actcctcagc
      121 gtctgctgcc ctggggtcaa gagttctggg acacatggct ctggagttca ggattctgga
      181 gcccatgttc ctctgcacag ggtccgagga ggttctgtat cgtttaatgt gaccaggaag
      241 caagaagctc acctggagga ggtcacatgg ggctttggcc ctgactcaaa ctacagagtc
      301 ctgctgcgag tcagtgctgc ggcagccgct cccacttggg tcagcctgca ggacaagtat
      361 cagcagaggg tccatgtgcc cagcatcttg tccctgaata ttgagaacct gacctctgag
      421 gacagtggac tgtaccgggc tcgagccagc ttcactggag gaatagaact taaccaagtt
      481 ttccccctta ctgtctatga gccggtgccc cttccccaga tcctgtccaa gttactgtcc
      541 gtcacaccag gctggtgcaa tgtcaccctg gagtgcagag cctcaggggc cacagaggac
      601 ctgaaggtga cctggcagag caagggcctc cccagggagc tggagcagag cgtgacactg
      661 ggaccagccc ccaactcctg gaccctgcct gtgaacctgc ccctgaggca gcccagtgcc
      721 agcttcacct gtgtggtcag caaccaggtg gaccagaaaa ctgccacctt agaccttggg
      781 gaagtctgtg tccatgattc acaaggacag gtcagcgctg accccctgcc aggcatccta
      841 ggggctgtcg tggctgtgct gttgatcctt ggaggaggac tgtacctttg gaagacacgt
      901 gagaagaaga agaaaatgga gactggaaga ggtacagaat tgcaggagga ctacagggac
      961 aatgatagtg gcatccagta cgcagagctg agccagcagg agtctcgaaa gggcacacgc
     1021 aagggtattg gtgagcgaca tttagaagaa aaggagcctg ttaatactgt ctacagtgag
     1081 gtccataagc cagaaagtga agccatgaag ataatttaat tggaggaggt aggagaactg
     1141 gaactcctgg gacacctcca ctcggagctt gatccttgca gacacctgca tctctcagct
     1201 ctggtctgac cgctctcctc ctgaagcttc ccaaagagaa ccttcctgca cgtgataatt
     1261 cccacagcct ctgctgtgtg gctggtatat gtctttctga gaacacagcc caggcatggg
     1321 gactacgtag aagatgttga ccacgccgca gaggaagggg ttaggacttg atgctggaaa
     1381 ctgagttggg ggtccgtgga ggcagcatgg gtaggtggga tcccacagag ggctggcctg
     1441 aggcttcctt tgcaccctgt atagggcaaa aggtttgtgt cgagcggtgt gtttgtgtgt
     1501 gtgtctgtgt gtatgttggg ggagtatcca gtgtatatta tacattgggc cgcagccctt
     1561 ttctccgacc actagtacta acctcagctt cagctcgtag acctcaaatc cacctcttgt
     1621 ggaatgggaa aaggaatttg tactgtttct ggaccttctg agacttctgt ttctcagaga
     1681 gggacccaag ttgggacttg tgttcttagg aaagcagcct cagcccttcc ttgtctgggg
     1741 taggggtact tggtcattag aatggaagtg cagtatgtct ctcccacgtc cccttgacga
     1801 ggctgctatg aggggtgagg ggtgaggctt gtaggaaggt ctgagccgac cctctcctgc
     1861 ctcttctact gaccctcagc accccacagc cctgctggcc tcagatccta ggtcagcctc
     1921 ctccttgctc actcacaacc ctcggcctga aatgatggct ccctttccct atcccttcct
     1981 cccatccctg tgtgttggaa tcctaccatt ccaacccaaa acccccttcc aagtcacatg
     2041 ttctacatgt tcccataggt ttgaaaatag tctcttcttc cacatctgtc cttttcagac
     2101 aacttggaca taatcaaggc ccctgccgta ggtttgcttt gggttggtca tgagtcttcc
     2161 ctgctagcct cacctggggc tcccccggga gggcgttggg gctttagggg gccggtgcca
     2221 aggagacaag cacctctccc tgtgaagtgt ctgagctacc cttactccca actcccacag
     2281 agagttggga gcagacaaga cccagagcac agaggctgct gaaggtcttt ctggtagtga
     2341 ctccacaagg aagcaaagag gacatgatga actccaatga cactgcctgg ttttccccaa
     2401 cccacatcca gcttcacgtt gcctgaggac ctaatgtagc ctgcactgtt ttgttggaag
     2461 cttctcctct ccctgggggt cctcacctcc tcaaagcctc cgcctcctgc cttgagtccc
     2521 agctcttgaa tcagagatgg actcactctg atactatgat ctgtggttct ttgtctgctg
     2581 gcctagattc ctgggtctct tggttcccct cccagctcag caagctcagc tgcttcactt
     2641 ctgacctcag aaagccaagt tctgagctaa aggactgagc gttatgctag gatcctgcta
     2701 gatggtacat gaataagaga ggagcagagt ttccataata aggctctttc taacctcttt
     2761 ctgctcaggc tgaacagaag gctgagaagg aaaaagatga catctctcac tggcatccca
     2821 ggtgaccggt catggctggg catcagtgcc catcagtcca gaagcactgt aagaggtgac
     2881 cacccattga cccctccccc ccacccaaag cagaagagaa aaaaatgaaa gaggaaggga
     2941 acttgacttt ccaagcctat catgaaccgg gttttgtccc aggcatttta taaatatcat
     3001 ttcttcttat tcttataaga actctctagg gtaggtatta cttatcccca ttttgcagga
     3061 caagtaaacg atgtcccaaa atagttggtg gcagagcaaa gccttaaatc caacactgga
     3121 caattccagc attcatatct tatcctttgc cacatggtca ctgaagacct cataatcctg
     3181 gattattcag aggagaatat cctccatttg ttcctcttcc aaggatcccg gtcttctgac
     3241 tcaggtgccc caacttgaaa tgagttcatc ctgatgatgg atggagcagt tggtggttga
     3301 aagaggaatc gtcccttaag tggacagtgg ggtaggagat atgggtggga gacatggaac
     3361 gagagaccct gccctctggc tcagatgaga cattcaaagc agagatgctt tggggcttcc
     3421 ctggtggcgc agtggttgag agtccgcctg ccgatgcagg ggacacaggt ttgtgccccg
     3481 gtccagaagg atcccacatg ccgcagagca gctgggtccg tgagccatgg ccgctgagcc
     3541 tgcgcgtcca gaacctgtgc tccacaacgg gagaggccac agcagtgaga ggccgcgtac
     3601 cgcaaaaaaa aaaaaaaaaa aaacagagat gcttcttcct cttgggtctt gtgggagtta
     3661 cttcctctca ttcaatgtgt attgtggatt tcagcatcac tattctcaag ccaacgtcct
     3721 tttccattgt tattcataac ttcattcaac aattatgtga ggcagatatc ctcaatgtac
     3781 aaatggaaaa ttaaaatcca gagatgttaa gtaccctaca gaagttctcc caagtgtaag
     3841 tgatgtagtc atatcagggg ataataattt cacacactgt gattcctttc tctctatcat
     3901 cccagacatc cagcaagtta ccgtcttcca ttgggttatc cttcataaag cttcttgtac
     3961 tccattctcc tcttattctt tcattcccat cttacacctg cagcggcacc atttttacat
     4021 ttccgccagc aatgtgtgag aatttctcca catcatctcc aactcttgtt attttttgat
     4081 tgttgccatc ctagtgctgg tgaagtggta tctcattgtg gttatgaatt gcatgtctca
     4141 aatgattcat gatgaacatg ttttcatgag cgtattgaca atttgtatac tttatttgaa
     4201 gaaatttctt tctctcttga attgtctctt gtcatccatt gcccctacct ctttgttgag
     4261 tctgcttttg tccagtcacc agggaacttc gtgttgttaa atccagtggt caattctcaa
     4321 tcctcatttc ccataacttc tcagccgcag tggacctata ttttctggaa acactgtttt
     4381 cgctttgtat tcactattca cattattttc ctcctactgg gtggttgctc cttaatttcc
     4441 tttatcagta tctttccgat atctccaact tctaaatttt ggaataaccc agggttcata
     4501 cccagaccat ccagaccacg tctcttcact gtctacactc atttcttttt gatgttatgg
     4561 ccatgcagta atcccatgac tacatgacct tatgtggcaa aagggactta aagatatgat
     4621 ccctcccctg gactccacat tgtaaatatc caactgttta cttgacatct ccacttgcgt
     4681 gtatagcaag catctccatc ttgacatatc taaattcaaa ctccccaaac atgcttccta
     4741 tacaatttct gatccctcca aatgtcacct caatccttcc atttcttctg gccacaaaac
     4801 cttggtgtca tccttgactt cattattttt ctcacacccc accctctatc tctattggaa
     4861 aatactgata tcttttcatt ctatatatat tcaaatactt attttcatat acctatatga
     4921 aaaaattata cttataataa aatacttctc accacctccc tagtccaata gggtcatcat
     4981 ttctcacctg gattactgca gtagcctccg agtctcctac ttttgtcttt aatcctttaa
     5041 tgtctatttt cataatatca cccagactta tcttttcaga acctaagttg cgtcacatta
     5101 cccgttagct cagaactacc ccgtgggccc actttatctg gaaggccctg tatcagctga
     5161 cctcatctcc catgctcccc tccttcctaa cccctctagg acaatgggct ccttgccttc
     5221 cttcgatact atatgcatgc tccttcctca aggcctttgc tctctagaat tctctccctc
     5281 tagatatcca cacgtctcgt cccctcacct ccttcaggtc tctgtacaga tgttaactct
     5341 gacccaccct gacctcccta tataaaacca caaacacttc ccggtgctct cctctctcct
     5401 ccatggtcta tttttctcca tagtactttc acaaggctgt gtgacagggt acatttattc
     5461 tgggctgtag tttaaagaca ggtgggtact gaggcctcaa agtataaact gcagtcctat
     5521 tatgcaaata ccattattat tcccaggaaa ccgcaacact gataaattaa tgaacttact
     5581 caaggtcaca taactgatag gtagcagagc tggaattgaa atcttggagt tggagtcgaa
     5641 agctcttgac cactgtatac caattaaata aagcatactc tctccacatg agggaatact
     5701 atttatgtaa taaggagaat aagttacaaa ttacatcgtt atatatttga atggaaagtt
     5761 gcccatgaaa tattaaatga gttatggaac atgcatagtg ttatcctata ttgtaaatat
     5821 ataaaaatat gtttatgtgg gcataaaatc gtctaaaagc tggtaggtta agaagttaac
     5881 aatggttatc ttctgcggtc tctttttctg tatcatcagt ttctttataa cactaatcaa
     5941 aaaagttacc tattaaaaat ttttagcagg acagtgacat gatcagagct gtgcttcaga
     6001 tagataaagc cacatataca ccaacaggaa gtttatcatc taaaccagtt aacgtactta
     6061 tgctgatttt cactttcttt tgtattgatt gatgccttca ggatctttat tgaaataacc
     6121 ccaaatatgt gtagatatgt ctatatagta caggcaaagt ggtctgattg atccaaatgg
     6181 acactccccg tgaattgctt tcaatctggg ctgttcatta gatcaactgg agagctttcg
     6241 ggaacagata cttggactct atcctgcaac tgggcaccat ctatatcttt taaaaactca
     6301 atagatgatt ctgattcatg atcaggcttg agaactgaaa ccttgggcct acatgaactc
     6361 ttcataaaat ccaaatggga atgtacatgg caaagaaagg ctgtgagttt gtcttccagg
     6421 atgtttctca gcgtgtgcta gtatgttatg tagtccagta aatgttggtt gagtgaagga
     6481 atgagtgaac gacaaagccc tacagtttgg cattacagtt gactcttgaa caacgtaggg
     6541 ggctcccacc ccctgagcag tcaaaaattc acatataact ttacaatcag ccccctgtat
     6601 tcatagttcc acatccacgg gttcaaacat ccatggatca tacagtactg ttgtacacgt
     6661 ctattgaaga aaatcagcat atatgtggac ctgcgcagtt caaactcatc tggttcaagg
     6721 gtcaactgta ctttgatgtg ttcaccatgt gttcagagtc tgacatgtag attcttagcc
     6781 aaaacccaga atctccattt catccattgc ccttttgcct tggggatgca aaatcttgat
     6841 aataaatgtt aaaagaca
//
LOCUS       XR_004351892            2979 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 9-like (LOC116760957),
            transcript variant X2, misc_RNA.
ACCESSION   XR_004351892
VERSION     XR_004351892.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2979
                     /gene="LOC116760957"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116760957"
     misc_RNA        1..2979
                     /gene="LOC116760957"
                     /product="SLAM family member 9-like, transcript variant
                     X2"
                     /db_xref="GeneID:116760957"
ORIGIN      
        1 ctagaccttt cttccacagc tgcacaggcg ggcaggcagc ctgtgatggg gccctgctca
       61 gaagaccccc atctctgctg ggcctcccgg ctcctgggat tcaccagcct actcctcagc
      121 gtctgctgcc ctggggtcaa gagttctggg acacatggct ctggagttca ggattctgga
      181 gcccatgttc ctctgcacag ggtccgagga ggttctgtat cgtttaatgt gaccaggaag
      241 caagaagctc acctggagga ggtcacatgg ggctttggcc ctgactcaaa ctacagagtc
      301 ctgctgcgag tcagtgctgc ggcagccgct cccacttggg tcagcctgca ggacaagtat
      361 cagcagaggg tccatgtgcc cagcatcttg tccctgaata ttgagaacct gacctctgag
      421 gacagtggac tgtaccgggc tcgagccagc ttcactggag gaatagaact taaccaagtt
      481 ttccccctta ctgtctatga gccggtgccc cttccccaga tcctgtccaa gttactgtcc
      541 gtcacaccag gctggtgcaa tgtcaccctg gagtgcagag cctcaggggc cacagaggac
      601 ctgaaggtga cctggcagag caagggcctc cccagggagc tggagcagag cgtgacactg
      661 ggaccagccc ccaactcctg gaccctgcct gtgaacctgc ccctgaggca gcccagtgcc
      721 agcttcacct gtgtggtcag caaccaggtg gaccagaaaa ctgccacctt agaccttggg
      781 gaagtctgtg tccatgattc acaaggacag gtcagcgctg accccctgcc aggcatccta
      841 ggggctgtcg tggctgtgct gttgatcctt ggaggaggac tgtacctttg gaagacacgt
      901 gagaagaaga agaaaatgga gactggaaga ggtacagaat tgcaggagga ctacagggac
      961 aatgatagtg gcatccagta cgcagagctg agccagcagg agtctcgaaa gggcacacgc
     1021 aagggtattg gtgagcgaca tttagaagaa aaggagcctg ttaatactgt ctacagtgag
     1081 gtccataagc cagaaagtga agccatgaag ataatttaat tggaggaggt aggagaactg
     1141 gaactcctgg gacacctcca ctcggagctt gatccttgca gacacctgca tctctcagct
     1201 ctggtctgac cgctctcctc ctgaagcttc ccaaagagaa ccttcctgca cgtgataatt
     1261 cccacagcct ctgctgtgtg gctggtatat gtctttctga gaacacagcc caggcatggg
     1321 gactacgtag aagatgttga ccacgccgca gaggaagggg ttaggacttg atgctggaaa
     1381 ctgagttggg ggtccgtgga ggcagcatgg gtaggtggga tcccacagag ggctggcctg
     1441 aggcttcctt tgcaccctgt atagggcaaa aggtttgtgt cgagcggtgt gtttgtgtgt
     1501 gtgtctgtgt gtatgttggg ggagtatcca gtgtatatta tacattgggc cgcagccctt
     1561 ttctccgacc actagtacta acctcagctt cagctcgtag acctcaaatc cacctcttgt
     1621 ggaatgggaa aaggaatttg tactgtttct ggaccttctg agacttctgt ttctcagaga
     1681 gggacccaag ttgggacttg tgttcttagg aaagcagcct cagcccttcc ttgtctgggg
     1741 taggggtact tggtcattag aatggaagtg cagtatgtct ctcccacgtc cccttgacga
     1801 ggctgctatg aggggtgagg ggtgaggctt gtaggaaggt ctgagccgac cctctcctgc
     1861 ctcttctact gaccctcagc accccacagc cctgctggcc tcagatccta ggtcagcctc
     1921 ctccttgctc actcacaacc ctcggcctga aatgatggct ccctttccct atcccttcct
     1981 cccatccctg tgtgttggaa tcctaccatt ccaacccaaa acccccttcc aagtcacatg
     2041 ttctacatgt tcccataggt ttgaaaatag tctcttcttc cacatctgtc cttttcagac
     2101 aacttggaca taatcaaggc ccctgccgta ggtttgcttt gggttggtca tgagtcttcc
     2161 ctgctagcct cacctggggc tcccccggga gggcgttggg gctttagggg gccggtgcca
     2221 aggagacaag cacctctccc tgtgaagtgt ctgagctacc cttactccca actcccacag
     2281 agagttggga gcagacaaga cccagagcac agaggctgct gaaggtcttt ctggtagtga
     2341 ctccacaagg aagcaaagag gacatgatga actccaatga cactgcctgg ttttccccaa
     2401 cccacatcca gcttcacgtt gcctgaggac ctaatgtagc ctgcactgtt ttgttggaag
     2461 cttctcctct ccctgggggt cctcacctcc tcaaagcctc cgcctcctgc cttgagtccc
     2521 agctcttgaa tcagagatgg actcactctg atactatgat ctgtggttct ttgtctgctg
     2581 gcctagattc ctgggtctct tggttcccct cccagctcag caagctcagc tgcttcactt
     2641 ctgacctcag aaagccaagt tctgagctaa aggactgagc gttatgctag gatcctgcta
     2701 gatggtacat gaataagaga ggagcagagt ttccataata aggctctttc taacctcttt
     2761 ctgctcaggc tgaacagaag gctgagaagg aaaaagatga catctctcac tggcatccca
     2821 ggtgaccggt catggctggg catcagtgcc catcagtcca gaagcactgt aagaggccac
     2881 attggaagcc gagttaccac tggactacat gggaagccct gagtcagggc aggtaagcag
     2941 atgctgccag aatggatccc agtggccttc tcatctgag
//
LOCUS       XR_004351894            5500 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 9-like (LOC116760957),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004351894
VERSION     XR_004351894.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5500
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5500
                     /gene="LOC116760957"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116760957"
     misc_RNA        1..5500
                     /gene="LOC116760957"
                     /product="SLAM family member 9-like, transcript variant
                     X3"
                     /db_xref="GeneID:116760957"
ORIGIN      
        1 ctagaccttt cttccacagc tgcacaggcg ggcaggcagc ctgtgatggg gccctgctca
       61 gaagaccccc atctctgctg ggcctcccgg ctcctgggat tcaccagcct actcctcagc
      121 gtctgctgcc ctggggtcaa gagttctggg acacatggct ctggagttca ggattctgga
      181 gcccatgttc ctctgcacag ggtccgagga ggttctgtat cgtttaatgt gaccaggaag
      241 caagaagctc acctggagga ggtcacatgg ggctttggcc ctgactcaaa ctacagagtc
      301 ctgctgcgag tcagtgctgc ggcagccgct cccacttggg tcagcctgca ggacaagtat
      361 cagcagaggg tccatgtgcc cagcatcttg tccctgaata ttgagaacct gacctctgag
      421 gacagtggac tgtaccgggc tcgagccagc ttcactggag gaatagaact taaccaagtt
      481 ttccccctta ctgtctatga gccggtgccc cttccccaga tcctgtccaa gttactgtcc
      541 gtcacaccag gctggtgcaa tgtcaccctg gagtgcagag cctcaggggc cacagaggac
      601 ctgaaggtga cctggcagag caagggcctc cccagggagc tggagcagag cgtgacactg
      661 ggaccagccc ccaactcctg gaccctgcct gtgaacctgc ccctgaggca gcccagtgcc
      721 agcttcacct gtgtggtcag caaccaggtg gaccagaaaa ctgccacctt agaccttggg
      781 gaagtctgtg tccatgattc acaaggacag gtcagcgctg accccctgcc aggcatccta
      841 ggggctgtcg tggctgtgct gttgatcctt ggaggaggac tgtacctttg gaagacacgt
      901 gagaagaaga agaaaatgga gactggaaga ggtacagaat tgcaggagga ctacagggac
      961 aatgatagtg gcatccagta cgcagagctg agccagcagg agtctcgaaa gggcacacgc
     1021 aagggtattg gtgagcgaca tttagaagaa aaggagcctg ttaatactgt ctacagtgag
     1081 gtccataagc cagaaagtga agccatgaag ataatttaat tggaggaggt aggagaactg
     1141 gaactcctgg gacacctcca ctcggagctt gatccttgca gacacctgca tctctcagct
     1201 ctggtctgac cgctctcctc ctgaagcttc ccaaagagaa ccttcctgca cgtgataatt
     1261 cccacagcct ctgctgtgtg gctggtatat gtctttctga gaacacagcc caggcatggg
     1321 gactacgtag aagatgttga ccacgccgca gaggaagggg ttaggacttg atgctggaaa
     1381 ctgagttggg ggtccgtgga ggcagcatgg gctgaacaga aggctgagaa ggaaaaagat
     1441 gacatctctc actggcatcc caggtgaccg gtcatggctg ggcatcagtg cccatcagtc
     1501 cagaagcact gtaagaggtg accacccatt gacccctccc ccccacccaa agcagaagag
     1561 aaaaaaatga aagaggaagg gaacttgact ttccaagcct atcatgaacc gggttttgtc
     1621 ccaggcattt tataaatatc atttcttctt attcttataa gaactctcta gggtaggtat
     1681 tacttatccc cattttgcag gacaagtaaa cgatgtccca aaatagttgg tggcagagca
     1741 aagccttaaa tccaacactg gacaattcca gcattcatat cttatccttt gccacatggt
     1801 cactgaagac ctcataatcc tggattattc agaggagaat atcctccatt tgttcctctt
     1861 ccaaggatcc cggtcttctg actcaggtgc cccaacttga aatgagttca tcctgatgat
     1921 ggatggagca gttggtggtt gaaagaggaa tcgtccctta agtggacagt ggggtaggag
     1981 atatgggtgg gagacatgga acgagagacc ctgccctctg gctcagatga gacattcaaa
     2041 gcagagatgc tttggggctt ccctggtggc gcagtggttg agagtccgcc tgccgatgca
     2101 ggggacacag gtttgtgccc cggtccagaa ggatcccaca tgccgcagag cagctgggtc
     2161 cgtgagccat ggccgctgag cctgcgcgtc cagaacctgt gctccacaac gggagaggcc
     2221 acagcagtga gaggccgcgt accgcaaaaa aaaaaaaaaa aaaaacagag atgcttcttc
     2281 ctcttgggtc ttgtgggagt tacttcctct cattcaatgt gtattgtgga tttcagcatc
     2341 actattctca agccaacgtc cttttccatt gttattcata acttcattca acaattatgt
     2401 gaggcagata tcctcaatgt acaaatggaa aattaaaatc cagagatgtt aagtacccta
     2461 cagaagttct cccaagtgta agtgatgtag tcatatcagg ggataataat ttcacacact
     2521 gtgattcctt tctctctatc atcccagaca tccagcaagt taccgtcttc cattgggtta
     2581 tccttcataa agcttcttgt actccattct cctcttattc tttcattccc atcttacacc
     2641 tgcagcggca ccatttttac atttccgcca gcaatgtgtg agaatttctc cacatcatct
     2701 ccaactcttg ttattttttg attgttgcca tcctagtgct ggtgaagtgg tatctcattg
     2761 tggttatgaa ttgcatgtct caaatgattc atgatgaaca tgttttcatg agcgtattga
     2821 caatttgtat actttatttg aagaaatttc tttctctctt gaattgtctc ttgtcatcca
     2881 ttgcccctac ctctttgttg agtctgcttt tgtccagtca ccagggaact tcgtgttgtt
     2941 aaatccagtg gtcaattctc aatcctcatt tcccataact tctcagccgc agtggaccta
     3001 tattttctgg aaacactgtt ttcgctttgt attcactatt cacattattt tcctcctact
     3061 gggtggttgc tccttaattt cctttatcag tatctttccg atatctccaa cttctaaatt
     3121 ttggaataac ccagggttca tacccagacc atccagacca cgtctcttca ctgtctacac
     3181 tcatttcttt ttgatgttat ggccatgcag taatcccatg actacatgac cttatgtggc
     3241 aaaagggact taaagatatg atccctcccc tggactccac attgtaaata tccaactgtt
     3301 tacttgacat ctccacttgc gtgtatagca agcatctcca tcttgacata tctaaattca
     3361 aactccccaa acatgcttcc tatacaattt ctgatccctc caaatgtcac ctcaatcctt
     3421 ccatttcttc tggccacaaa accttggtgt catccttgac ttcattattt ttctcacacc
     3481 ccaccctcta tctctattgg aaaatactga tatcttttca ttctatatat attcaaatac
     3541 ttattttcat atacctatat gaaaaaatta tacttataat aaaatacttc tcaccacctc
     3601 cctagtccaa tagggtcatc atttctcacc tggattactg cagtagcctc cgagtctcct
     3661 acttttgtct ttaatccttt aatgtctatt ttcataatat cacccagact tatcttttca
     3721 gaacctaagt tgcgtcacat tacccgttag ctcagaacta ccccgtgggc ccactttatc
     3781 tggaaggccc tgtatcagct gacctcatct cccatgctcc cctccttcct aacccctcta
     3841 ggacaatggg ctccttgcct tccttcgata ctatatgcat gctccttcct caaggccttt
     3901 gctctctaga attctctccc tctagatatc cacacgtctc gtcccctcac ctccttcagg
     3961 tctctgtaca gatgttaact ctgacccacc ctgacctccc tatataaaac cacaaacact
     4021 tcccggtgct ctcctctctc ctccatggtc tatttttctc catagtactt tcacaaggct
     4081 gtgtgacagg gtacatttat tctgggctgt agtttaaaga caggtgggta ctgaggcctc
     4141 aaagtataaa ctgcagtcct attatgcaaa taccattatt attcccagga aaccgcaaca
     4201 ctgataaatt aatgaactta ctcaaggtca cataactgat aggtagcaga gctggaattg
     4261 aaatcttgga gttggagtcg aaagctcttg accactgtat accaattaaa taaagcatac
     4321 tctctccaca tgagggaata ctatttatgt aataaggaga ataagttaca aattacatcg
     4381 ttatatattt gaatggaaag ttgcccatga aatattaaat gagttatgga acatgcatag
     4441 tgttatccta tattgtaaat atataaaaat atgtttatgt gggcataaaa tcgtctaaaa
     4501 gctggtaggt taagaagtta acaatggtta tcttctgcgg tctctttttc tgtatcatca
     4561 gtttctttat aacactaatc aaaaaagtta cctattaaaa atttttagca ggacagtgac
     4621 atgatcagag ctgtgcttca gatagataaa gccacatata caccaacagg aagtttatca
     4681 tctaaaccag ttaacgtact tatgctgatt ttcactttct tttgtattga ttgatgcctt
     4741 caggatcttt attgaaataa ccccaaatat gtgtagatat gtctatatag tacaggcaaa
     4801 gtggtctgat tgatccaaat ggacactccc cgtgaattgc tttcaatctg ggctgttcat
     4861 tagatcaact ggagagcttt cgggaacaga tacttggact ctatcctgca actgggcacc
     4921 atctatatct tttaaaaact caatagatga ttctgattca tgatcaggct tgagaactga
     4981 aaccttgggc ctacatgaac tcttcataaa atccaaatgg gaatgtacat ggcaaagaaa
     5041 ggctgtgagt ttgtcttcca ggatgtttct cagcgtgtgc tagtatgtta tgtagtccag
     5101 taaatgttgg ttgagtgaag gaatgagtga acgacaaagc cctacagttt ggcattacag
     5161 ttgactcttg aacaacgtag ggggctccca ccccctgagc agtcaaaaat tcacatataa
     5221 ctttacaatc agccccctgt attcatagtt ccacatccac gggttcaaac atccatggat
     5281 catacagtac tgttgtacac gtctattgaa gaaaatcagc atatatgtgg acctgcgcag
     5341 ttcaaactca tctggttcaa gggtcaactg tactttgatg tgttcaccat gtgttcagag
     5401 tctgacatgt agattcttag ccaaaaccca gaatctccat ttcatccatt gcccttttgc
     5461 cttggggatg caaaatcttg ataataaatg ttaaaagaca
//
LOCUS       XR_004351896            1491 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 9-like (LOC116760957),
            transcript variant X4, misc_RNA.
ACCESSION   XR_004351896
VERSION     XR_004351896.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1491
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1491
                     /gene="LOC116760957"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116760957"
     misc_RNA        1..1491
                     /gene="LOC116760957"
                     /product="SLAM family member 9-like, transcript variant
                     X4"
                     /db_xref="GeneID:116760957"
ORIGIN      
        1 ctagaccttt cttccacagc tgcacaggcg ggcaggcagc ctgtgatggg gccctgctca
       61 gaagaccccc atctctgctg ggcctcccgg ctcctgggat tcaccagcct actcctcagc
      121 gtctgctgcc ctggggtcaa gagttctggg acacatggct ctggagttca ggattctgga
      181 gcccatgttc ctctgcacag ggtccgagga ggttctgtat cgtttaatgt gaccaggaag
      241 caagaagctc acctggagga ggtcacatgg ggctttggcc ctgactcaaa ctacagagtc
      301 ctgctgcgag tcagtgctgc ggcagccgct cccacttggg tcagcctgca ggacaagtat
      361 cagcagaggg tccatgtgcc cagcatcttg tccctgaata ttgagaacct gacctctgag
      421 gacagtggac tgtaccgggc tcgagccagc ttcactggag gaatagaact taaccaagtt
      481 ttccccctta ctgtctatga gccggtgccc cttccccaga tcctgtccaa gttactgtcc
      541 gtcacaccag gctggtgcaa tgtcaccctg gagtgcagag cctcaggggc cacagaggac
      601 ctgaaggtga cctggcagag caagggcctc cccagggagc tggagcagag cgtgacactg
      661 ggaccagccc ccaactcctg gaccctgcct gtgaacctgc ccctgaggca gcccagtgcc
      721 agcttcacct gtgtggtcag caaccaggtg gaccagaaaa ctgccacctt agaccttggg
      781 gaagtctgtg tccatgattc acaaggacag gtcagcgctg accccctgcc aggcatccta
      841 ggggctgtcg tggctgtgct gttgatcctt ggaggaggac tgtacctttg gaagacacgt
      901 gagaagaaga agaaaatgga gactggaaga ggtacagaat tgcaggagga ctacagggac
      961 aatgatagtg gcatccagta cgcagagctg agccagcagg agtctcgaaa gggcacacgc
     1021 aagggtattg gtgagcgaca tttagaagaa aaggagcctg ttaatactgt ctacagtgag
     1081 gtccataagc cagaaagtga agccatgaag ataatttaat tggaggaggt aggagaactg
     1141 gaactcctgg gacacctcca ctcggagctt gatccttgca gacacctgca tctctcagct
     1201 ctggtctgac cgctctcctc ctgaagcttc ccaaagagaa ccttcctgca cgtgataatt
     1261 cccacagcct ctgctgtgtg gctggtatat gtctttctga gaacacagcc caggcatggg
     1321 gactacgtag aagatgttga ccacgccgca gaggaagggg ttaggacttg atgctggaaa
     1381 ctgagttggg ggtccgtgga ggcagcatgg ataggccaca ttggaagccg agttaccact
     1441 ggactacatg ggaagccctg agtcagggca ggtaagcaga tgctgccaga a
//
LOCUS       XM_032646581            5218 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 9-like (LOC116760957),
            transcript variant X5, mRNA.
ACCESSION   XM_032646581
VERSION     XM_032646581.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5218
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5218
                     /gene="LOC116760957"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116760957"
     CDS             46..1119
                     /gene="LOC116760957"
                     /codon_start=1
                     /product="SLAM family member 9-like isoform X1"
                     /protein_id="XP_032502472.1"
                     /db_xref="GeneID:116760957"
                     /translation="MGPCSEDPHLCWASRLLGFTSLLLSVCCPGVKSSGTHGSGVQDS
                     GAHVPLHRVRGGSVSFNVTRKQEAHLEEVTWGFGPDSNYRVLLRVSAAAAAPTWVSLQ
                     DKYQQRVHVPSILSLNIENLTSEDSGLYRARASFTGGIELNQVFPLTVYEPVPLPQIL
                     SKLLSVTPGWCNVTLECRASGATEDLKVTWQSKGLPRELEQSVTLGPAPNSWTLPVNL
                     PLRQPSASFTCVVSNQVDQKTATLDLGEVCVHDSQGQVSADPLPGILGAVVAVLLILG
                     GGLYLWKTREKKKKMETGRGTELQEDYRDNDSGIQYAELSQQESRKGTRKGIGERHLE
                     EKEPVNTVYSEVHKPESEAMKII"
     misc_feature    208..498
                     /gene="LOC116760957"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    217..231
                     /gene="LOC116760957"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    259..273
                     /gene="LOC116760957"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    388..402
                     /gene="LOC116760957"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    430..447
                     /gene="LOC116760957"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    472..483
                     /gene="LOC116760957"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    562..768
                     /gene="LOC116760957"
                     /note="Immunoglobulin domain; Region: Ig; cd00096"
                     /db_xref="CDD:409353"
     misc_feature    562..576
                     /gene="LOC116760957"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    604..618
                     /gene="LOC116760957"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    679..693
                     /gene="LOC116760957"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    721..738
                     /gene="LOC116760957"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ctagaccttt cttccacagc tgcacaggcg ggcaggcagc ctgtgatggg gccctgctca
       61 gaagaccccc atctctgctg ggcctcccgg ctcctgggat tcaccagcct actcctcagc
      121 gtctgctgcc ctggggtcaa gagttctggg acacatggct ctggagttca ggattctgga
      181 gcccatgttc ctctgcacag ggtccgagga ggttctgtat cgtttaatgt gaccaggaag
      241 caagaagctc acctggagga ggtcacatgg ggctttggcc ctgactcaaa ctacagagtc
      301 ctgctgcgag tcagtgctgc ggcagccgct cccacttggg tcagcctgca ggacaagtat
      361 cagcagaggg tccatgtgcc cagcatcttg tccctgaata ttgagaacct gacctctgag
      421 gacagtggac tgtaccgggc tcgagccagc ttcactggag gaatagaact taaccaagtt
      481 ttccccctta ctgtctatga gccggtgccc cttccccaga tcctgtccaa gttactgtcc
      541 gtcacaccag gctggtgcaa tgtcaccctg gagtgcagag cctcaggggc cacagaggac
      601 ctgaaggtga cctggcagag caagggcctc cccagggagc tggagcagag cgtgacactg
      661 ggaccagccc ccaactcctg gaccctgcct gtgaacctgc ccctgaggca gcccagtgcc
      721 agcttcacct gtgtggtcag caaccaggtg gaccagaaaa ctgccacctt agaccttggg
      781 gaagtctgtg tccatgattc acaaggacag gtcagcgctg accccctgcc aggcatccta
      841 ggggctgtcg tggctgtgct gttgatcctt ggaggaggac tgtacctttg gaagacacgt
      901 gagaagaaga agaaaatgga gactggaaga ggtacagaat tgcaggagga ctacagggac
      961 aatgatagtg gcatccagta cgcagagctg agccagcagg agtctcgaaa gggcacacgc
     1021 aagggtattg gtgagcgaca tttagaagaa aaggagcctg ttaatactgt ctacagtgag
     1081 gtccataagc cagaaagtga agccatgaag ataatttaat tggaggaggc tgaacagaag
     1141 gctgagaagg aaaaagatga catctctcac tggcatccca ggtgaccggt catggctggg
     1201 catcagtgcc catcagtcca gaagcactgt aagaggtgac cacccattga cccctccccc
     1261 ccacccaaag cagaagagaa aaaaatgaaa gaggaaggga acttgacttt ccaagcctat
     1321 catgaaccgg gttttgtccc aggcatttta taaatatcat ttcttcttat tcttataaga
     1381 actctctagg gtaggtatta cttatcccca ttttgcagga caagtaaacg atgtcccaaa
     1441 atagttggtg gcagagcaaa gccttaaatc caacactgga caattccagc attcatatct
     1501 tatcctttgc cacatggtca ctgaagacct cataatcctg gattattcag aggagaatat
     1561 cctccatttg ttcctcttcc aaggatcccg gtcttctgac tcaggtgccc caacttgaaa
     1621 tgagttcatc ctgatgatgg atggagcagt tggtggttga aagaggaatc gtcccttaag
     1681 tggacagtgg ggtaggagat atgggtggga gacatggaac gagagaccct gccctctggc
     1741 tcagatgaga cattcaaagc agagatgctt tggggcttcc ctggtggcgc agtggttgag
     1801 agtccgcctg ccgatgcagg ggacacaggt ttgtgccccg gtccagaagg atcccacatg
     1861 ccgcagagca gctgggtccg tgagccatgg ccgctgagcc tgcgcgtcca gaacctgtgc
     1921 tccacaacgg gagaggccac agcagtgaga ggccgcgtac cgcaaaaaaa aaaaaaaaaa
     1981 aaacagagat gcttcttcct cttgggtctt gtgggagtta cttcctctca ttcaatgtgt
     2041 attgtggatt tcagcatcac tattctcaag ccaacgtcct tttccattgt tattcataac
     2101 ttcattcaac aattatgtga ggcagatatc ctcaatgtac aaatggaaaa ttaaaatcca
     2161 gagatgttaa gtaccctaca gaagttctcc caagtgtaag tgatgtagtc atatcagggg
     2221 ataataattt cacacactgt gattcctttc tctctatcat cccagacatc cagcaagtta
     2281 ccgtcttcca ttgggttatc cttcataaag cttcttgtac tccattctcc tcttattctt
     2341 tcattcccat cttacacctg cagcggcacc atttttacat ttccgccagc aatgtgtgag
     2401 aatttctcca catcatctcc aactcttgtt attttttgat tgttgccatc ctagtgctgg
     2461 tgaagtggta tctcattgtg gttatgaatt gcatgtctca aatgattcat gatgaacatg
     2521 ttttcatgag cgtattgaca atttgtatac tttatttgaa gaaatttctt tctctcttga
     2581 attgtctctt gtcatccatt gcccctacct ctttgttgag tctgcttttg tccagtcacc
     2641 agggaacttc gtgttgttaa atccagtggt caattctcaa tcctcatttc ccataacttc
     2701 tcagccgcag tggacctata ttttctggaa acactgtttt cgctttgtat tcactattca
     2761 cattattttc ctcctactgg gtggttgctc cttaatttcc tttatcagta tctttccgat
     2821 atctccaact tctaaatttt ggaataaccc agggttcata cccagaccat ccagaccacg
     2881 tctcttcact gtctacactc atttcttttt gatgttatgg ccatgcagta atcccatgac
     2941 tacatgacct tatgtggcaa aagggactta aagatatgat ccctcccctg gactccacat
     3001 tgtaaatatc caactgttta cttgacatct ccacttgcgt gtatagcaag catctccatc
     3061 ttgacatatc taaattcaaa ctccccaaac atgcttccta tacaatttct gatccctcca
     3121 aatgtcacct caatccttcc atttcttctg gccacaaaac cttggtgtca tccttgactt
     3181 cattattttt ctcacacccc accctctatc tctattggaa aatactgata tcttttcatt
     3241 ctatatatat tcaaatactt attttcatat acctatatga aaaaattata cttataataa
     3301 aatacttctc accacctccc tagtccaata gggtcatcat ttctcacctg gattactgca
     3361 gtagcctccg agtctcctac ttttgtcttt aatcctttaa tgtctatttt cataatatca
     3421 cccagactta tcttttcaga acctaagttg cgtcacatta cccgttagct cagaactacc
     3481 ccgtgggccc actttatctg gaaggccctg tatcagctga cctcatctcc catgctcccc
     3541 tccttcctaa cccctctagg acaatgggct ccttgccttc cttcgatact atatgcatgc
     3601 tccttcctca aggcctttgc tctctagaat tctctccctc tagatatcca cacgtctcgt
     3661 cccctcacct ccttcaggtc tctgtacaga tgttaactct gacccaccct gacctcccta
     3721 tataaaacca caaacacttc ccggtgctct cctctctcct ccatggtcta tttttctcca
     3781 tagtactttc acaaggctgt gtgacagggt acatttattc tgggctgtag tttaaagaca
     3841 ggtgggtact gaggcctcaa agtataaact gcagtcctat tatgcaaata ccattattat
     3901 tcccaggaaa ccgcaacact gataaattaa tgaacttact caaggtcaca taactgatag
     3961 gtagcagagc tggaattgaa atcttggagt tggagtcgaa agctcttgac cactgtatac
     4021 caattaaata aagcatactc tctccacatg agggaatact atttatgtaa taaggagaat
     4081 aagttacaaa ttacatcgtt atatatttga atggaaagtt gcccatgaaa tattaaatga
     4141 gttatggaac atgcatagtg ttatcctata ttgtaaatat ataaaaatat gtttatgtgg
     4201 gcataaaatc gtctaaaagc tggtaggtta agaagttaac aatggttatc ttctgcggtc
     4261 tctttttctg tatcatcagt ttctttataa cactaatcaa aaaagttacc tattaaaaat
     4321 ttttagcagg acagtgacat gatcagagct gtgcttcaga tagataaagc cacatataca
     4381 ccaacaggaa gtttatcatc taaaccagtt aacgtactta tgctgatttt cactttcttt
     4441 tgtattgatt gatgccttca ggatctttat tgaaataacc ccaaatatgt gtagatatgt
     4501 ctatatagta caggcaaagt ggtctgattg atccaaatgg acactccccg tgaattgctt
     4561 tcaatctggg ctgttcatta gatcaactgg agagctttcg ggaacagata cttggactct
     4621 atcctgcaac tgggcaccat ctatatcttt taaaaactca atagatgatt ctgattcatg
     4681 atcaggcttg agaactgaaa ccttgggcct acatgaactc ttcataaaat ccaaatggga
     4741 atgtacatgg caaagaaagg ctgtgagttt gtcttccagg atgtttctca gcgtgtgcta
     4801 gtatgttatg tagtccagta aatgttggtt gagtgaagga atgagtgaac gacaaagccc
     4861 tacagtttgg cattacagtt gactcttgaa caacgtaggg ggctcccacc ccctgagcag
     4921 tcaaaaattc acatataact ttacaatcag ccccctgtat tcatagttcc acatccacgg
     4981 gttcaaacat ccatggatca tacagtactg ttgtacacgt ctattgaaga aaatcagcat
     5041 atatgtggac ctgcgcagtt caaactcatc tggttcaagg gtcaactgta ctttgatgtg
     5101 ttcaccatgt gttcagagtc tgacatgtag attcttagcc aaaacccaga atctccattt
     5161 catccattgc ccttttgcct tggggatgca aaatcttgat aataaatgtt aaaagaca
//
LOCUS       XM_032646590            6866 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 9-like (LOC116760957),
            transcript variant X6, mRNA.
ACCESSION   XM_032646590
VERSION     XM_032646590.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6866
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6866
                     /gene="LOC116760957"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116760957"
     CDS             63..1127
                     /gene="LOC116760957"
                     /codon_start=1
                     /product="SLAM family member 9-like isoform X2"
                     /protein_id="XP_032502481.1"
                     /db_xref="GeneID:116760957"
                     /translation="MSGSAEPQGNRPFFHSCTGGQAACDGALLRRPPSLLGLPAPGIH
                     QPTPQVRGGSVSFNVTRKQEAHLEEVTWGFGPDSNYRVLLRVSAAAAAPTWVSLQDKY
                     QQRVHVPSILSLNIENLTSEDSGLYRARASFTGGIELNQVFPLTVYEPVPLPQILSKL
                     LSVTPGWCNVTLECRASGATEDLKVTWQSKGLPRELEQSVTLGPAPNSWTLPVNLPLR
                     QPSASFTCVVSNQVDQKTATLDLGEVCVHDSQGQVSADPLPGILGAVVAVLLILGGGL
                     YLWKTREKKKKMETGRGTELQEDYRDNDSGIQYAELSQQESRKGTRKGIGERHLEEKE
                     PVNTVYSEVHKPESEAMKII"
     misc_feature    216..506
                     /gene="LOC116760957"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    225..239
                     /gene="LOC116760957"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    267..281
                     /gene="LOC116760957"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    396..410
                     /gene="LOC116760957"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    438..455
                     /gene="LOC116760957"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    480..491
                     /gene="LOC116760957"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    570..776
                     /gene="LOC116760957"
                     /note="Immunoglobulin domain; Region: Ig; cd00096"
                     /db_xref="CDD:409353"
     misc_feature    570..584
                     /gene="LOC116760957"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    612..626
                     /gene="LOC116760957"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    687..701
                     /gene="LOC116760957"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    729..746
                     /gene="LOC116760957"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gaggcccagc ctaccctggc tgaaacagcg tgacttctgt gttcaaccat aggctgacgc
       61 tgatgagcgg ctcagccgaa ccccagggaa acagaccttt cttccacagc tgcacaggcg
      121 ggcaggcagc ctgtgatggg gccctgctca gaagaccccc atctctgctg ggcctcccgg
      181 ctcctgggat tcaccagcct actcctcagg tccgaggagg ttctgtatcg tttaatgtga
      241 ccaggaagca agaagctcac ctggaggagg tcacatgggg ctttggccct gactcaaact
      301 acagagtcct gctgcgagtc agtgctgcgg cagccgctcc cacttgggtc agcctgcagg
      361 acaagtatca gcagagggtc catgtgccca gcatcttgtc cctgaatatt gagaacctga
      421 cctctgagga cagtggactg taccgggctc gagccagctt cactggagga atagaactta
      481 accaagtttt cccccttact gtctatgagc cggtgcccct tccccagatc ctgtccaagt
      541 tactgtccgt cacaccaggc tggtgcaatg tcaccctgga gtgcagagcc tcaggggcca
      601 cagaggacct gaaggtgacc tggcagagca agggcctccc cagggagctg gagcagagcg
      661 tgacactggg accagccccc aactcctgga ccctgcctgt gaacctgccc ctgaggcagc
      721 ccagtgccag cttcacctgt gtggtcagca accaggtgga ccagaaaact gccaccttag
      781 accttgggga agtctgtgtc catgattcac aaggacaggt cagcgctgac cccctgccag
      841 gcatcctagg ggctgtcgtg gctgtgctgt tgatccttgg aggaggactg tacctttgga
      901 agacacgtga gaagaagaag aaaatggaga ctggaagagg tacagaattg caggaggact
      961 acagggacaa tgatagtggc atccagtacg cagagctgag ccagcaggag tctcgaaagg
     1021 gcacacgcaa gggtattggt gagcgacatt tagaagaaaa ggagcctgtt aatactgtct
     1081 acagtgaggt ccataagcca gaaagtgaag ccatgaagat aatttaattg gaggaggtag
     1141 gagaactgga actcctggga cacctccact cggagcttga tccttgcaga cacctgcatc
     1201 tctcagctct ggtctgaccg ctctcctcct gaagcttccc aaagagaacc ttcctgcacg
     1261 tgataattcc cacagcctct gctgtgtggc tggtatatgt ctttctgaga acacagccca
     1321 ggcatgggga ctacgtagaa gatgttgacc acgccgcaga ggaaggggtt aggacttgat
     1381 gctggaaact gagttggggg tccgtggagg cagcatgggt aggtgggatc ccacagaggg
     1441 ctggcctgag gcttcctttg caccctgtat agggcaaaag gtttgtgtcg agcggtgtgt
     1501 ttgtgtgtgt gtctgtgtgt atgttggggg agtatccagt gtatattata cattgggccg
     1561 cagccctttt ctccgaccac tagtactaac ctcagcttca gctcgtagac ctcaaatcca
     1621 cctcttgtgg aatgggaaaa ggaatttgta ctgtttctgg accttctgag acttctgttt
     1681 ctcagagagg gacccaagtt gggacttgtg ttcttaggaa agcagcctca gcccttcctt
     1741 gtctggggta ggggtacttg gtcattagaa tggaagtgca gtatgtctct cccacgtccc
     1801 cttgacgagg ctgctatgag gggtgagggg tgaggcttgt aggaaggtct gagccgaccc
     1861 tctcctgcct cttctactga ccctcagcac cccacagccc tgctggcctc agatcctagg
     1921 tcagcctcct ccttgctcac tcacaaccct cggcctgaaa tgatggctcc ctttccctat
     1981 cccttcctcc catccctgtg tgttggaatc ctaccattcc aacccaaaac ccccttccaa
     2041 gtcacatgtt ctacatgttc ccataggttt gaaaatagtc tcttcttcca catctgtcct
     2101 tttcagacaa cttggacata atcaaggccc ctgccgtagg tttgctttgg gttggtcatg
     2161 agtcttccct gctagcctca cctggggctc ccccgggagg gcgttggggc tttagggggc
     2221 cggtgccaag gagacaagca cctctccctg tgaagtgtct gagctaccct tactcccaac
     2281 tcccacagag agttgggagc agacaagacc cagagcacag aggctgctga aggtctttct
     2341 ggtagtgact ccacaaggaa gcaaagagga catgatgaac tccaatgaca ctgcctggtt
     2401 ttccccaacc cacatccagc ttcacgttgc ctgaggacct aatgtagcct gcactgtttt
     2461 gttggaagct tctcctctcc ctgggggtcc tcacctcctc aaagcctccg cctcctgcct
     2521 tgagtcccag ctcttgaatc agagatggac tcactctgat actatgatct gtggttcttt
     2581 gtctgctggc ctagattcct gggtctcttg gttcccctcc cagctcagca agctcagctg
     2641 cttcacttct gacctcagaa agccaagttc tgagctaaag gactgagcgt tatgctagga
     2701 tcctgctaga tggtacatga ataagagagg agcagagttt ccataataag gctctttcta
     2761 acctctttct gctcaggctg aacagaaggc tgagaaggaa aaagatgaca tctctcactg
     2821 gcatcccagg tgaccggtca tggctgggca tcagtgccca tcagtccaga agcactgtaa
     2881 gaggtgacca cccattgacc cctccccccc acccaaagca gaagagaaaa aaatgaaaga
     2941 ggaagggaac ttgactttcc aagcctatca tgaaccgggt tttgtcccag gcattttata
     3001 aatatcattt cttcttattc ttataagaac tctctagggt aggtattact tatccccatt
     3061 ttgcaggaca agtaaacgat gtcccaaaat agttggtggc agagcaaagc cttaaatcca
     3121 acactggaca attccagcat tcatatctta tcctttgcca catggtcact gaagacctca
     3181 taatcctgga ttattcagag gagaatatcc tccatttgtt cctcttccaa ggatcccggt
     3241 cttctgactc aggtgcccca acttgaaatg agttcatcct gatgatggat ggagcagttg
     3301 gtggttgaaa gaggaatcgt cccttaagtg gacagtgggg taggagatat gggtgggaga
     3361 catggaacga gagaccctgc cctctggctc agatgagaca ttcaaagcag agatgctttg
     3421 gggcttccct ggtggcgcag tggttgagag tccgcctgcc gatgcagggg acacaggttt
     3481 gtgccccggt ccagaaggat cccacatgcc gcagagcagc tgggtccgtg agccatggcc
     3541 gctgagcctg cgcgtccaga acctgtgctc cacaacggga gaggccacag cagtgagagg
     3601 ccgcgtaccg caaaaaaaaa aaaaaaaaaa acagagatgc ttcttcctct tgggtcttgt
     3661 gggagttact tcctctcatt caatgtgtat tgtggatttc agcatcacta ttctcaagcc
     3721 aacgtccttt tccattgtta ttcataactt cattcaacaa ttatgtgagg cagatatcct
     3781 caatgtacaa atggaaaatt aaaatccaga gatgttaagt accctacaga agttctccca
     3841 agtgtaagtg atgtagtcat atcaggggat aataatttca cacactgtga ttcctttctc
     3901 tctatcatcc cagacatcca gcaagttacc gtcttccatt gggttatcct tcataaagct
     3961 tcttgtactc cattctcctc ttattctttc attcccatct tacacctgca gcggcaccat
     4021 ttttacattt ccgccagcaa tgtgtgagaa tttctccaca tcatctccaa ctcttgttat
     4081 tttttgattg ttgccatcct agtgctggtg aagtggtatc tcattgtggt tatgaattgc
     4141 atgtctcaaa tgattcatga tgaacatgtt ttcatgagcg tattgacaat ttgtatactt
     4201 tatttgaaga aatttctttc tctcttgaat tgtctcttgt catccattgc ccctacctct
     4261 ttgttgagtc tgcttttgtc cagtcaccag ggaacttcgt gttgttaaat ccagtggtca
     4321 attctcaatc ctcatttccc ataacttctc agccgcagtg gacctatatt ttctggaaac
     4381 actgttttcg ctttgtattc actattcaca ttattttcct cctactgggt ggttgctcct
     4441 taatttcctt tatcagtatc tttccgatat ctccaacttc taaattttgg aataacccag
     4501 ggttcatacc cagaccatcc agaccacgtc tcttcactgt ctacactcat ttctttttga
     4561 tgttatggcc atgcagtaat cccatgacta catgacctta tgtggcaaaa gggacttaaa
     4621 gatatgatcc ctcccctgga ctccacattg taaatatcca actgtttact tgacatctcc
     4681 acttgcgtgt atagcaagca tctccatctt gacatatcta aattcaaact ccccaaacat
     4741 gcttcctata caatttctga tccctccaaa tgtcacctca atccttccat ttcttctggc
     4801 cacaaaacct tggtgtcatc cttgacttca ttatttttct cacaccccac cctctatctc
     4861 tattggaaaa tactgatatc ttttcattct atatatattc aaatacttat tttcatatac
     4921 ctatatgaaa aaattatact tataataaaa tacttctcac cacctcccta gtccaatagg
     4981 gtcatcattt ctcacctgga ttactgcagt agcctccgag tctcctactt ttgtctttaa
     5041 tcctttaatg tctattttca taatatcacc cagacttatc ttttcagaac ctaagttgcg
     5101 tcacattacc cgttagctca gaactacccc gtgggcccac tttatctgga aggccctgta
     5161 tcagctgacc tcatctccca tgctcccctc cttcctaacc cctctaggac aatgggctcc
     5221 ttgccttcct tcgatactat atgcatgctc cttcctcaag gcctttgctc tctagaattc
     5281 tctccctcta gatatccaca cgtctcgtcc cctcacctcc ttcaggtctc tgtacagatg
     5341 ttaactctga cccaccctga cctccctata taaaaccaca aacacttccc ggtgctctcc
     5401 tctctcctcc atggtctatt tttctccata gtactttcac aaggctgtgt gacagggtac
     5461 atttattctg ggctgtagtt taaagacagg tgggtactga ggcctcaaag tataaactgc
     5521 agtcctatta tgcaaatacc attattattc ccaggaaacc gcaacactga taaattaatg
     5581 aacttactca aggtcacata actgataggt agcagagctg gaattgaaat cttggagttg
     5641 gagtcgaaag ctcttgacca ctgtatacca attaaataaa gcatactctc tccacatgag
     5701 ggaatactat ttatgtaata aggagaataa gttacaaatt acatcgttat atatttgaat
     5761 ggaaagttgc ccatgaaata ttaaatgagt tatggaacat gcatagtgtt atcctatatt
     5821 gtaaatatat aaaaatatgt ttatgtgggc ataaaatcgt ctaaaagctg gtaggttaag
     5881 aagttaacaa tggttatctt ctgcggtctc tttttctgta tcatcagttt ctttataaca
     5941 ctaatcaaaa aagttaccta ttaaaaattt ttagcaggac agtgacatga tcagagctgt
     6001 gcttcagata gataaagcca catatacacc aacaggaagt ttatcatcta aaccagttaa
     6061 cgtacttatg ctgattttca ctttcttttg tattgattga tgccttcagg atctttattg
     6121 aaataacccc aaatatgtgt agatatgtct atatagtaca ggcaaagtgg tctgattgat
     6181 ccaaatggac actccccgtg aattgctttc aatctgggct gttcattaga tcaactggag
     6241 agctttcggg aacagatact tggactctat cctgcaactg ggcaccatct atatctttta
     6301 aaaactcaat agatgattct gattcatgat caggcttgag aactgaaacc ttgggcctac
     6361 atgaactctt cataaaatcc aaatgggaat gtacatggca aagaaaggct gtgagtttgt
     6421 cttccaggat gtttctcagc gtgtgctagt atgttatgta gtccagtaaa tgttggttga
     6481 gtgaaggaat gagtgaacga caaagcccta cagtttggca ttacagttga ctcttgaaca
     6541 acgtaggggg ctcccacccc ctgagcagtc aaaaattcac atataacttt acaatcagcc
     6601 ccctgtattc atagttccac atccacgggt tcaaacatcc atggatcata cagtactgtt
     6661 gtacacgtct attgaagaaa atcagcatat atgtggacct gcgcagttca aactcatctg
     6721 gttcaagggt caactgtact ttgatgtgtt caccatgtgt tcagagtctg acatgtagat
     6781 tcttagccaa aacccagaat ctccatttca tccattgccc ttttgccttg gggatgcaaa
     6841 atcttgataa taaatgttaa aagaca
//
LOCUS       XM_032646601            1578 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus paired box 7 (PAX7), transcript variant
            X1, mRNA.
ACCESSION   XM_032646601
VERSION     XM_032646601.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1578
                     /gene="PAX7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins"
                     /db_xref="GeneID:116760971"
     CDS             1..1578
                     /gene="PAX7"
                     /codon_start=1
                     /product="paired box protein Pax-7 isoform X1"
                     /protein_id="XP_032502492.1"
                     /db_xref="GeneID:116760971"
                     /translation="MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGV
                     FINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG
                     GSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRVLRI
                     KFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRS
                     RTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGA
                     NQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQ
                     GGLAAAAAAADTSSAYGARHSFTSYSESFMNPAAPSNHMNPVSNGLSPQKRGFKSQLH
                     CSGWPLSLVLSNTVMSILSNPGAVPPQPQADFSISPLHGGLDSATSISASCSQRADSI
                     KPGDSLPTSQSYCPPTYSTPGYSVDPVAGYQYGQYGQTAVDYLAKNVSLSTQRRMKLG
                     EHSAVLGLLPVETGQAY"
     misc_feature    100..477
                     /gene="PAX7"
                     /note="Paired Box domain; Region: PAX; smart00351"
                     /db_xref="CDD:128645"
     misc_feature    order(115..120,133..135,139..147,151..153,166..168,
                     202..204,208..210,235..237,244..246,250..255,265..267,
                     292..312,316..321,325..330,385..393,448..450,454..459,
                     466..468,475..477)
                     /gene="PAX7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238076"
     misc_feature    646..816
                     /gene="PAX7"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1033..1149
                     /gene="PAX7"
                     /note="Paired box protein 7; Region: Pax7; pfam12360"
                     /db_xref="CDD:403540"
ORIGIN      
        1 atggcggccc ttcccggcac cgtaccgagg atgatgcggc cggctcccgg gcagaactat
       61 ccccgcacgg gatttcctct ggaagtgtcc accccacttg gccaaggccg ggtcaatcag
      121 cttggtgggg tcttcatcaa cgggcgaccc cttccgaacc acatccgtca caagatagta
      181 gagatggccc accatggcat ccggccctgt gtcatctccc gtcagctgcg tgtctcccat
      241 ggctgcgtct ccaagattct ctgccgctac caggagaccg ggtccatccg gcccggggcc
      301 attggcggca gcaaacccag acaggtggcg actccggatg tggagaaaaa gatagaggag
      361 tacaagaggg aaaacccagg catgttcagc tgggagatcc gagaccggct gctgaaggac
      421 gggcactgtg accgcagcac cgtgccctca gtgagttcga ttagccgcgt gctcagaatc
      481 aagttcggga agaaggagga ggaagacgaa gcggataaga aggaggacga cggcgagaag
      541 aaagccaagc acagcatcga cggcatcttg ggcgacaaag gcaaccgtct ggatgagggc
      601 tcagacgtgg agtcagaacc tgacctccct ctgaaacgta agcagcgccg cagtcggacc
      661 acgttcacag ccgagcagct ggaagagctg gagaaggcct tcgagaggac tcactacccg
      721 gacatctaca cccgggagga gctggcacag aggaccaagc tgacggaggc acgagtgcag
      781 gtctggttca gtaaccgccg cgcccgctgg cgtaaacagg caggagccaa ccagctggca
      841 gcattcaacc accttctgcc aggcggcttc ccgcccaccg gcatgcccac gctgcccccc
      901 taccagctgc cagactccac ctaccccacc accaccatct cccaagatgg gggcagcacc
      961 gtgcaccggc cccagcccct cccgccgtcc accatgcacc aggggggcct ggctgcggcc
     1021 gctgcagccg cggacaccag ctctgcttac ggagctcgcc acagcttcac cagctactcc
     1081 gagagcttca tgaacccggc agcgccctcc aaccacatga accctgtcag caatggcctg
     1141 tctcctcaga aaagggggtt taaatcccag ctccactgct cagggtggcc tctctctctc
     1201 gtgctctcca acacagtgat gagcattctg agtaaccccg gtgcagtgcc gccgcagccc
     1261 caggccgact tctccatctc tccgctgcac ggcggcctgg actccgccac ctccatctcg
     1321 gccagctgca gccagcgggc tgactccatc aagccgggag acagcctgcc cacctcccag
     1381 tcctactgcc cgcccaccta cagcaccccc ggctacagcg tggaccccgt ggctggctac
     1441 cagtacggcc agtatggcca gactgctgtt gattacctgg ccaaaaacgt gagcctctcc
     1501 acacagcgtc gcatgaagct cggggaacat tcggctgtgc tgggactcct gcctgtggaa
     1561 actggccagg cctactag
//
LOCUS       XM_032646608            1518 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus paired box 7 (PAX7), transcript variant
            X2, mRNA.
ACCESSION   XM_032646608
VERSION     XM_032646608.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1518
                     /gene="PAX7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins"
                     /db_xref="GeneID:116760971"
     CDS             1..1518
                     /gene="PAX7"
                     /codon_start=1
                     /product="paired box protein Pax-7 isoform X2"
                     /protein_id="XP_032502499.1"
                     /db_xref="GeneID:116760971"
                     /translation="MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGV
                     FINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG
                     GSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVL
                     RIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQR
                     RSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA
                     GANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTM
                     HQGGLAAAAAAADTSSAYGARHSFTSYSESFMNPAAPSNHMNPVSNGLSPQVMSILSN
                     PGAVPPQPQADFSISPLHGGLDSATSISASCSQRADSIKPGDSLPTSQSYCPPTYSTP
                     GYSVDPVAGYQYGQYGQTAVDYLAKNVSLSTQRRMKLGEHSAVLGLLPVETGQAY"
     misc_feature    100..483
                     /gene="PAX7"
                     /note="Paired Box domain; Region: PAX; smart00351"
                     /db_xref="CDD:128645"
     misc_feature    order(115..120,133..135,139..147,151..153,166..168,
                     202..204,208..210,235..237,244..246,250..255,265..267,
                     292..312,316..321,325..330,385..393,448..450,460..465,
                     472..474,481..483)
                     /gene="PAX7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238076"
     misc_feature    652..822
                     /gene="PAX7"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1039..1155
                     /gene="PAX7"
                     /note="Paired box protein 7; Region: Pax7; pfam12360"
                     /db_xref="CDD:403540"
ORIGIN      
        1 atggcggccc ttcccggcac cgtaccgagg atgatgcggc cggctcccgg gcagaactat
       61 ccccgcacgg gatttcctct ggaagtgtcc accccacttg gccaaggccg ggtcaatcag
      121 cttggtgggg tcttcatcaa cgggcgaccc cttccgaacc acatccgtca caagatagta
      181 gagatggccc accatggcat ccggccctgt gtcatctccc gtcagctgcg tgtctcccat
      241 ggctgcgtct ccaagattct ctgccgctac caggagaccg ggtccatccg gcccggggcc
      301 attggcggca gcaaacccag acaggtggcg actccggatg tggagaaaaa gatagaggag
      361 tacaagaggg aaaacccagg catgttcagc tgggagatcc gagaccggct gctgaaggac
      421 gggcactgtg accgcagcac cgtgccctca ggtttagtga gttcgattag ccgcgtgctc
      481 agaatcaagt tcgggaagaa ggaggaggaa gacgaagcgg ataagaagga ggacgacggc
      541 gagaagaaag ccaagcacag catcgacggc atcttgggcg acaaaggcaa ccgtctggat
      601 gagggctcag acgtggagtc agaacctgac ctccctctga aacgtaagca gcgccgcagt
      661 cggaccacgt tcacagccga gcagctggaa gagctggaga aggccttcga gaggactcac
      721 tacccggaca tctacacccg ggaggagctg gcacagagga ccaagctgac ggaggcacga
      781 gtgcaggtct ggttcagtaa ccgccgcgcc cgctggcgta aacaggcagg agccaaccag
      841 ctggcagcat tcaaccacct tctgccaggc ggcttcccgc ccaccggcat gcccacgctg
      901 cccccctacc agctgccaga ctccacctac cccaccacca ccatctccca agatgggggc
      961 agcaccgtgc accggcccca gcccctcccg ccgtccacca tgcaccaggg gggcctggct
     1021 gcggccgctg cagccgcgga caccagctct gcttacggag ctcgccacag cttcaccagc
     1081 tactccgaga gcttcatgaa cccggcagcg ccctccaacc acatgaaccc tgtcagcaat
     1141 ggcctgtctc ctcaggtgat gagcattctg agtaaccccg gtgcagtgcc gccgcagccc
     1201 caggccgact tctccatctc tccgctgcac ggcggcctgg actccgccac ctccatctcg
     1261 gccagctgca gccagcgggc tgactccatc aagccgggag acagcctgcc cacctcccag
     1321 tcctactgcc cgcccaccta cagcaccccc ggctacagcg tggaccccgt ggctggctac
     1381 cagtacggcc agtatggcca gactgctgtt gattacctgg ccaaaaacgt gagcctctcc
     1441 acacagcgtc gcatgaagct cggggaacat tcggctgtgc tgggactcct gcctgtggaa
     1501 actggccagg cctactag
//
LOCUS       XM_032646616            1512 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus paired box 7 (PAX7), transcript variant
            X3, mRNA.
ACCESSION   XM_032646616
VERSION     XM_032646616.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1512
                     /gene="PAX7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 Proteins"
                     /db_xref="GeneID:116760971"
     CDS             1..1512
                     /gene="PAX7"
                     /codon_start=1
                     /product="paired box protein Pax-7 isoform X3"
                     /protein_id="XP_032502507.1"
                     /db_xref="GeneID:116760971"
                     /translation="MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGV
                     FINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG
                     GSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRVLRI
                     KFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRS
                     RTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGA
                     NQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQ
                     GGLAAAAAAADTSSAYGARHSFTSYSESFMNPAAPSNHMNPVSNGLSPQVMSILSNPG
                     AVPPQPQADFSISPLHGGLDSATSISASCSQRADSIKPGDSLPTSQSYCPPTYSTPGY
                     SVDPVAGYQYGQYGQTAVDYLAKNVSLSTQRRMKLGEHSAVLGLLPVETGQAY"
     misc_feature    100..477
                     /gene="PAX7"
                     /note="Paired Box domain; Region: PAX; smart00351"
                     /db_xref="CDD:128645"
     misc_feature    order(115..120,133..135,139..147,151..153,166..168,
                     202..204,208..210,235..237,244..246,250..255,265..267,
                     292..312,316..321,325..330,385..393,448..450,454..459,
                     466..468,475..477)
                     /gene="PAX7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238076"
     misc_feature    646..816
                     /gene="PAX7"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1033..1149
                     /gene="PAX7"
                     /note="Paired box protein 7; Region: Pax7; pfam12360"
                     /db_xref="CDD:403540"
ORIGIN      
        1 atggcggccc ttcccggcac cgtaccgagg atgatgcggc cggctcccgg gcagaactat
       61 ccccgcacgg gatttcctct ggaagtgtcc accccacttg gccaaggccg ggtcaatcag
      121 cttggtgggg tcttcatcaa cgggcgaccc cttccgaacc acatccgtca caagatagta
      181 gagatggccc accatggcat ccggccctgt gtcatctccc gtcagctgcg tgtctcccat
      241 ggctgcgtct ccaagattct ctgccgctac caggagaccg ggtccatccg gcccggggcc
      301 attggcggca gcaaacccag acaggtggcg actccggatg tggagaaaaa gatagaggag
      361 tacaagaggg aaaacccagg catgttcagc tgggagatcc gagaccggct gctgaaggac
      421 gggcactgtg accgcagcac cgtgccctca gtgagttcga ttagccgcgt gctcagaatc
      481 aagttcggga agaaggagga ggaagacgaa gcggataaga aggaggacga cggcgagaag
      541 aaagccaagc acagcatcga cggcatcttg ggcgacaaag gcaaccgtct ggatgagggc
      601 tcagacgtgg agtcagaacc tgacctccct ctgaaacgta agcagcgccg cagtcggacc
      661 acgttcacag ccgagcagct ggaagagctg gagaaggcct tcgagaggac tcactacccg
      721 gacatctaca cccgggagga gctggcacag aggaccaagc tgacggaggc acgagtgcag
      781 gtctggttca gtaaccgccg cgcccgctgg cgtaaacagg caggagccaa ccagctggca
      841 gcattcaacc accttctgcc aggcggcttc ccgcccaccg gcatgcccac gctgcccccc
      901 taccagctgc cagactccac ctaccccacc accaccatct cccaagatgg gggcagcacc
      961 gtgcaccggc cccagcccct cccgccgtcc accatgcacc aggggggcct ggctgcggcc
     1021 gctgcagccg cggacaccag ctctgcttac ggagctcgcc acagcttcac cagctactcc
     1081 gagagcttca tgaacccggc agcgccctcc aaccacatga accctgtcag caatggcctg
     1141 tctcctcagg tgatgagcat tctgagtaac cccggtgcag tgccgccgca gccccaggcc
     1201 gacttctcca tctctccgct gcacggcggc ctggactccg ccacctccat ctcggccagc
     1261 tgcagccagc gggctgactc catcaagccg ggagacagcc tgcccacctc ccagtcctac
     1321 tgcccgccca cctacagcac ccccggctac agcgtggacc ccgtggctgg ctaccagtac
     1381 ggccagtatg gccagactgc tgttgattac ctggccaaaa acgtgagcct ctccacacag
     1441 cgtcgcatga agctcgggga acattcggct gtgctgggac tcctgcctgt ggaaactggc
     1501 caggcctact ag
//
LOCUS       XM_032646626            4077 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tenascin R (TNR), mRNA.
ACCESSION   XM_032646626
VERSION     XM_032646626.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4077
                     /gene="TNR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 Proteins, and 2%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116760986"
     CDS             1..4077
                     /gene="TNR"
                     /codon_start=1
                     /product="tenascin-R"
                     /protein_id="XP_032502517.1"
                     /db_xref="GeneID:116760986"
                     /translation="MGADGETVVLKNMLIGVNLILLGSMLKPSECQLEVTTERVQRQA
                     VEEEGGADSYNTSGKEQPVVFNHVYNINVPLDSLCSSGLEASAEQEVSAEDEVLTEYT
                     GQTSDHASQVTFTHRINLPKKACPCASSAQVLQELLSRIEMLEREVSVLRDQCTSNCC
                     QQSAATGQLDYIPHCSGHGNFSLESCGCICDQGWFGKNCSEPYCPLGCSSRGVCVDGQ
                     CICDSEYSGDDCSELRCPTDCSSRGLCVDGECVCEEAYTGEGCSELRCPGDCSGKGRC
                     TNGTCLCQEGYTGENCGQQRCLNACSGRGHCQEGICFCEEGYQGPDCSAVAPPEDLRV
                     AGISDRSIELEWDGPMAVTEYVISYQPMALGGLQLQQRVPGDWSGVTISELEPGLTYN
                     ISVYAVISDILSLPITAKVATHLSTPQGLRFKTITETTVEVQWEPFSFSFDGWEISFI
                     PKNNEGGVIAQLPSDVTSFNQTGLKPGEEYTVNVVALKEQARSPPTSASVSTVIDGPT
                     HILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRP
                     GSQYEVWVSAVRGNNESESTTTQFTTEIDAPKNLRLGSRTATSLDLEWDNSEAEVQEY
                     KIVYSTLAGEQYHELLVPKSIGPTTRATLTDLVPGTEYGIGISAIMNSQQSIPATMNA
                     RTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGIASEVTVPKDRTSYT
                     LTDLEPGAEYIISITAERGRQQSLESTVDAFTGFRPISHLHFSHVTSSSVNITWSDPS
                     PPADRLILNYSPRDEEEETMEVSLDATKRHAVLMGLQPATEYIVNLVAVHGTVTSEPI
                     MGSITTGIDPPKDITISNVTKDSVMVSWSPPVASFDYYRVSYRPTQVGRLDSSVVPNT
                     VTEFTISKLYPATEYEISLNSVRGREESERICTLVHTAMDNPVDLTATNITPTEALLQ
                     WKAPVSEVENYVIVLTHFAVAGETILVDGDREEFQLVDLLPRTHYTVTMYAASGPLTS
                     GAISTNFSTLLDAPANLTASEVTRQSALISWQPPRAETENYILTYKSTDGSRKELIVD
                     AEDTWIRLEGLSESTDYTVLLQAAQDTERSGITSTAFTTGGRVFPHPQDCAQHLMNGD
                     TLSGVYTIFLNGELSRKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWAEYRVGFGNL
                     EDEFWLGLDNIHGITSQGRYELRIDMRDGQDAAFAYYDKFSVEGSRSLYKLRIGGYNG
                     TAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQG
                     INWYHWKGHEFSIPFVEMKMRPYSHRLMAGRKRRSLQF"
     misc_feature    607..693
                     /gene="TNR"
                     /note="Tenascin EGF domain; Region: EGF_Tenascin; cl46594"
                     /db_xref="CDD:480934"
     misc_feature    619..951
                     /gene="TNR"
                     /note="MXAN_6577-like cysteine-rich domain; Region:
                     C_rich_MXAN6577; NF041328"
                     /db_xref="CDD:469225"
     misc_feature    982..1194
                     /gene="TNR"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1111..2862
                     /gene="TNR"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    order(1207..1212,1216..1221)
                     /gene="TNR"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2860..3078
                     /gene="TNR"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    order(3070..3075,3079..3084)
                     /gene="TNR"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    3124..3333
                     /gene="TNR"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
     misc_feature    3397..4026
                     /gene="TNR"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; Region: FReD; cd00087"
                     /db_xref="CDD:238040"
     misc_feature    3760..3762
                     /gene="TNR"
                     /note="gamma-gamma dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238040"
     misc_feature    order(3844..3846,3850..3852,3856..3858)
                     /gene="TNR"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238040"
     misc_feature    order(3868..3870,3877..3882,3907..3912)
                     /gene="TNR"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
ORIGIN      
        1 atgggggcag acggggaaac agtggtcttg aagaacatgc tcattggcgt caacctgatc
       61 cttctgggct ccatgctcaa gccctcagag tgtcagctgg aggtcaccac ggaaagggtc
      121 cagagacagg cggtggagga ggaaggaggc gctgacagct acaatacatc cggcaaagag
      181 cagccggtgg tcttcaacca cgtgtacaac attaacgtgc ccctggacag cctctgctcc
      241 tcggggctgg aggcctcggc cgagcaggag gtgagtgccg aagacgaggt gctgacagag
      301 tacacgggcc agacctcgga ccacgcgagc caggtcacct tcacccacag gatcaacctc
      361 cccaaaaagg cctgcccatg cgccagctct gcccaggtgc tgcaggagct gctgagccgg
      421 atcgagatgc tggagaggga ggtgtcagtg cttcgggacc agtgcaccag caactgttgc
      481 cagcaaagtg cggccacagg acaactggat tatatccctc actgcagtgg ccacggcaac
      541 tttagcctcg agtcctgtgg ctgcatctgc gatcaaggct ggtttggcaa gaactgctcg
      601 gagccctact gccccctagg ctgctccagt cggggcgtgt gtgtggatgg ccagtgcatc
      661 tgtgacagcg agtatagcgg tgacgactgc tcagagctcc ggtgcccgac agactgcagc
      721 tcccgggggc tgtgcgtgga cggggagtgt gtctgtgaag aggcctacac tggcgagggc
      781 tgcagcgagc tgaggtgccc tggggactgt tcggggaagg ggagatgtac caacggtacc
      841 tgcctgtgcc aggagggcta cactggtgag aactgcggcc agcagcggtg tctgaacgcc
      901 tgcagtgggc gaggacactg ccaggagggg atctgcttct gtgaagaggg ctaccagggc
      961 cctgactgct cagcagttgc ccctccagag gacttgcgag tggctggtat cagcgacagg
     1021 tccattgagc tggaatggga cgggccgatg gcagtgacgg aatatgtgat ctcttaccag
     1081 ccgatggccc tggggggcct ccagctccag cagcgggtgc ctggagattg gagtggtgtc
     1141 accatctcgg agctggagcc aggtctcacc tacaacatca gcgtctacgc tgtcattagc
     1201 gacatcctca gccttcccat cacggccaag gtggccaccc atctctccac tcctcaaggg
     1261 ctacgattca agacaatcac agagaccacc gtggaggtgc agtgggagcc cttctcattc
     1321 tccttcgatg ggtgggagat cagcttcatt ccaaagaaca acgaaggagg ggtgattgcc
     1381 cagctcccca gtgatgtgac atccttcaac cagacgggat taaagcctgg ggaggaatat
     1441 actgtcaatg tggtggctct gaaagagcaa gcccggagcc cccctacctc ggccagcgtc
     1501 tccactgtca ttgatgggcc cacgcacatc ctggttcgag atgtctccga cactgtagcc
     1561 ttcgtggagt ggaccccacc tcgagccaaa gtcgatttca ttctcttgaa gtacggcttg
     1621 gtgggcgggg aaggtgggaa gaccaccttc cgactgcagc ctcccctgag ccagtactcg
     1681 gtacaggccc tgcggcccgg ctcccaatac gaagtgtggg tcagcgcagt ccgtggaaac
     1741 aacgagagcg agtccaccac cacccagttc acaacagaga ttgacgcccc caagaacctg
     1801 cggcttggtt cccgcacagc aaccagcctt gaccttgagt gggacaacag tgaagcagag
     1861 gttcaggagt acaagattgt gtacagcacc ttggcaggcg agcagtacca tgagctgttg
     1921 gtccccaaga gcatcggtcc aaccaccaga gccacgctca cagatctggt gcctggcact
     1981 gagtatggaa ttggaatatc cgccatcatg aactcacagc aaagcatacc agccaccatg
     2041 aatgccagga ctgaacttga cagtcctcga gacctcatgg tgacagcctc ctcagaaacc
     2101 tccatctccc tcatctggac caaggccagc ggccccattg accactaccg aatcacattc
     2161 accccatcct ctgggatcgc ctccgaagtc actgtgccca aggacaggac ctcgtacaca
     2221 ctgacagatc tagagcccgg ggcagagtac atcatttcaa tcacagctga gaggggtcgg
     2281 cagcagagct tggagtccac ggtggatgcc ttcacaggct tccgccccat ctcccatttg
     2341 cacttttctc acgtgacctc ctccagtgtg aacatcacct ggagtgaccc atcccctcca
     2401 gcagacagac tcattctgaa ctacagcccc cgggatgaag aggaagagac gatggaggtc
     2461 tctctggatg ccaccaagag gcatgctgtc ctgatgggcc tacagccagc caccgagtac
     2521 attgtgaact tggtggcagt ccatggcaca gtgacctctg agcccatcat gggctccatc
     2581 accacaggaa ttgatccccc caaagacatc acaatcagca atgtgaccaa ggactcagtt
     2641 atggtctcct ggagccctcc tgttgcgtct tttgattact accgagtatc atatcggcca
     2701 acacaagtgg gacggctgga cagctcggtg gtgcccaaca cagtgacaga attcaccatc
     2761 agcaagctgt acccagctac cgaatatgaa atcagcctca acagcgtgcg gggcagggag
     2821 gagagtgagc ggatctgcac tcttgtgcac acagccatgg acaatcctgt ggatctgact
     2881 gctaccaaca tcactccaac agaagctctg ctgcagtgga aggcaccagt gagtgaagtg
     2941 gagaactacg tcattgttct cacacacttt gcagttgctg gagagaccat cctggttgat
     3001 ggagaccgtg aggaattcca gcttgttgac ctgcttccta ggacccacta taccgtcact
     3061 atgtatgccg ccagtgggcc tctcaccagt ggcgccatca gcaccaactt ctctaccctc
     3121 ctggacgctc ctgccaatct gacagcaagt gaagtcacca gacaaagtgc cctgatctcc
     3181 tggcagcctc ccagagcaga gactgagaat tacatcttga cctacaaatc caccgacgga
     3241 agccgcaagg agctgattgt ggatgcggag gacacgtgga tacgactgga gggcctgtct
     3301 gagagcacag actacacggt gctcctgcag gcggcccagg acaccgagcg gagcggcatc
     3361 acctccaccg ccttcaccac agggggccgg gtcttccctc atcctcaaga ctgtgcccag
     3421 catttgatga acggagacac tctgagcggg gtttacacca ttttcctcaa cggagagcta
     3481 agccggaagt tacaggtgta ctgtgatatg acgaccgacg ggggtggctg gattgtattc
     3541 cagaggcggc agaatggcca aactgatttt ttccggaaat gggctgagta ccgcgttggc
     3601 ttcgggaacc tggaggatga gttttggctg gggctggaca acatacacgg gatcacgtcc
     3661 cagggccgct acgagctgcg catagacatg cgtgacggcc aggacgccgc cttcgcctac
     3721 tacgacaagt tctctgtcga gggcagcaga agcctgtaca agctccgcat aggaggctac
     3781 aacggcactg caggggactc cctcagctat catcagggcc gccctttctc cacagaggac
     3841 agagacaatg atgttgcagt taccaactgt gccatgtcat acaagggggc ttggtggtat
     3901 aagaactgcc accggaccaa cctcaatggg aaatacgggg agtccaggca cagccagggg
     3961 atcaactggt accattggaa aggccatgag ttctccatcc ccttcgtgga aatgaagatg
     4021 cgcccctaca gccaccgtct catggcgggg aggaaacggc ggtccttgca gttctaa
//
LOCUS       XM_032646638            3817 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC component 4 (AGO4),
            transcript variant X1, mRNA.
ACCESSION   XM_032646638
VERSION     XM_032646638.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3817
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3817
                     /gene="AGO4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 37 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760994"
     CDS             221..2806
                     /gene="AGO4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X1"
                     /protein_id="XP_032502529.1"
                     /db_xref="GeneID:116760994"
                     /translation="MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDV
                     YHYDVDIKPEKRPRRVNRDVVDTMVRHFKMQVFGDRQPGYDGKRNMYTAHPLPIGRER
                     VDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLP
                     SMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQ
                     PIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTR
                     RPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVC
                     NIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIV
                     VHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAP
                     QKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQ
                     LIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGI
                     NNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQ
                     TSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVA
                     WPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDS
                     TITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRS
                     VSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQH
                     TMYFA"
     misc_feature    296..685
                     /gene="AGO4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    716..868
                     /gene="AGO4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    869..1231
                     /gene="AGO4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1025..1027,1070..1072,1112..1114,1124..1126,
                     1178..1180,1199..1201,1205..1207)
                     /gene="AGO4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1370..2677
                     /gene="AGO4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1781..1783,1793..1795,1829..1840,1847..1849,
                     1871..1873,1880..1882,1892..1894,1904..1906)
                     /gene="AGO4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1985..1987,1991..1993,2231..2233,2645..2647)
                     /gene="AGO4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 ttgtttttgt tgtcgctgag gccggaagag ccgcgggagc cgggtccctg tccccgggcc
       61 gggcgccgcc gccgcccctt gctcagcgcc cgcgtctccg cggcgccccc atagcgccaa
      121 tattccggag atcaagcgtt acgcggcggc ggcggcggcg gcggcggggc ccggagcggg
      181 aggcgccggg gaccgcggcg aggcggcccc cgccgccgcc atggaggcgc tgggacccgg
      241 acctccaacc agcctgtttc agccgcctcg tcgtcctggc cttggaactg ttggaaaacc
      301 aattcgactg ttagccaatc attttcaggt tcagattcct aaaatagatg tgtatcacta
      361 tgacgtggat attaaaccag aaaaacggcc tcgtagagtc aacagggacg tagtagatac
      421 aatggtgcgg cacttcaaga tgcaggtatt tggtgatcgg cagcctggct atgatggcaa
      481 aagaaacatg tacacagcac atccactgcc aattggacgg gagagggttg atatggaagt
      541 gacccttcca ggtgagggta aagaccagac ctttaaagtg tctgttcagt gggtatcagt
      601 tgtgagcctt cagttgcttt tagaagcttt ggccgggcac ttgaatgaag tcccagatga
      661 ctcagttcaa gcacttgatg ttatcacaag acaccttccc tccatgaggt acactccagt
      721 gggtcgctcc tttttctcac ctcctgaagg ttactatcac cctctgggag ggggcaggga
      781 ggtttggttt ggctttcatc agtctgtgag acctgccatg tggaatatga tgctgaatat
      841 tgatgtatct gcaactgctt tctaccgggc tcagcctatc attgagttca tgtgtgaggt
      901 tttagacatt cagaacatca atgaacagac caaaccccta acagactccc agcgtgtcaa
      961 gtttaccaaa gaaatcagag gtcttaaagt tgaggtgacc cactgtggac agatgaaacg
     1021 aaaatatcga gtgtgtaatg tgactagacg gccagccagt catcagactt ttcccttaca
     1081 gctagaaaat gggcaagcaa tggaatgtac agtagctcaa tattttaagc aaaagtatag
     1141 tctgcaactg aaataccccc atcttccctg tctccaggtg ggacaagaac aaaagcatac
     1201 atacttgccg cttgaggttt gtaatatagt ggcaggacaa cgatgtataa agaagctcac
     1261 agacaatcag acttccacga tgatcaaagc cacagcaaga tctgctcctg acagacaaga
     1321 agaaatcagt agactggtga agagtaacag catggtgggc ggacctgatc catatcttaa
     1381 agaatttggt attgttgtcc acaatgaaat gactgagctc acaggcaggg tacttccagc
     1441 accaatgctg caatacggag gccggaataa aacggtagcc acacccaacc agggtgtctg
     1501 ggacatgcga ggaaagcagt tttatgctgg cattgaaatt aaagtttggg cagttgcttg
     1561 ttttgcgcct cagaaacaat gtagggaaga tttactaaag agtttcactg accagctccg
     1621 taaaatctct aaggatgcag gaatgcccat ccagggtcag ccatgttttt gcaagtatgc
     1681 acaaggtgca gacagcgtgg agcccatgtt taaacacctg aaaatgacat atgtgggcct
     1741 acagctgata gtggttatct tgcctgggaa gacgccagta tatgcggagg tgaaacgtgt
     1801 tggagatacc ctcctgggta tggctacaca gtgtgtccag gtaaaaaatg tagtgaagac
     1861 ctcacctcaa accctttcca acctttgcct gaagataaat gcaaagctcg gaggaattaa
     1921 caatgtgctt gtacctcatc aaaggccctc ggtgttccag cagcctgtca tcttcctggg
     1981 agcggatgtc acgcaccccc cagcagggga cgggaagaag ccttccattg ctgctgtcgt
     2041 tggcagtatg gacggccacc ccagccggta ctgtgccact gttcgggtgc agacgtcccg
     2101 ccaggagatc tcccaggagc tcctctatag tcaggaggta atccaggacc ttactaacat
     2161 ggttcgagag ctgctgatcc agttctacaa atccacacgc ttcaaaccca ctcgaatcat
     2221 ctattaccgt ggaggggtat ccgagggaca gatgaaacag gtagcttggc cagaactaat
     2281 agcaattcga aaggcatgta ttagtttgga agaagattac cggccaggaa taacctatat
     2341 tgtggtgcag aaaagacatc acacacgact cttctgtgca gataaaacag agagggtggg
     2401 gaaaagtggc aatgtaccag caggcactac cgtggatagc accatcacac atccatctga
     2461 gtttgacttt tacctctgta gtcatgcagg aattcaggga accagccgtc cttcacatta
     2521 ccaggtcttg tgggatgaca actgcttcac cgcagatgag ctccagttac taacttacca
     2581 gctatgtcat acctatgtgc ggtgtacacg ctcagtctct attccagccc ctgcctatta
     2641 tgcccgcctt gtagcattca gagcaaggta tcatctggtg gataaagatc atgacagtgc
     2701 ggaaggcagt catgtgtcag gacagagcaa tggccgagat cctcaggcct tggctaaagc
     2761 tgtgcagatc caccatgata cccagcacac gatgtatttt gcctgagagt ctcagaaaaa
     2821 gaactcaacc agtttggcac cccatgcagg ctcaaaatgt ttcaaacgcc tactgcctct
     2881 agagagagcc aagttgactt caggtggtcc tctaccagca actcagaata gttgcactga
     2941 atctatactt cgcagcactg tctgatgcat caacaaaatt gagccatttt ttttaaagta
     3001 atagatactc attgattatc ttttctgatg cactggactg aatttttacc tcatcatgca
     3061 aaggctaatc agcctgaact ttctaaagga ctttatgaga aaggtgtcta tggactattt
     3121 tgctagctgt ggtgttcacc gcatccctct agtcttacaa gagaagctta ttcctttttt
     3181 ctgtattcgt cgagtggggt atatgcataa acgggagaga aaaaccaatc tacttcagtt
     3241 cagtgtaact atttaattgt gtgggtcaat aggcttttta atggagattt ctgacttcgc
     3301 cactgtaaat gccttcaacg agcattaatt tttgaaagtt ttacagagtt ttattagttt
     3361 tactacttta tgtattgatc tctacagact tgtgctgggg caagtacagg ctgccaggca
     3421 attgcactat atctggctgc agattcagac aggcagttct cttatttggt tgacttttgt
     3481 gaatgtgtaa cacatgtgat gcatgtcatg gtgacagata acactgccat ggtaaaaagt
     3541 actcgtgttt cccccctttg aaaaaaatca gcttttagta tttttcagag tcttcaaaaa
     3601 tgcccatttt atgctgctgt gtggtttatt agatctaaat gattttttaa cttttctcat
     3661 agcaagttaa ctttggcaat aaacattttt taaagtccct cctcttcctc cccctgacag
     3721 tgtagttttt tagatgagat ttcggtatga tttttatcag ctatttctta tagatcataa
     3781 tctggcaatt tttgaaactg gtcagaaaag gcatata
//
LOCUS       XM_032646646            3608 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC component 4 (AGO4),
            transcript variant X2, mRNA.
ACCESSION   XM_032646646
VERSION     XM_032646646.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3608
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3608
                     /gene="AGO4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116760994"
     CDS             213..2597
                     /gene="AGO4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X2"
                     /protein_id="XP_032502537.1"
                     /db_xref="GeneID:116760994"
                     /translation="MVRHFKMQVFGDRQPGYDGKRNMYTAHPLPIGRERVDMEVTLPG
                     EGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGR
                     SFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEV
                     LDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFP
                     LQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCI
                     KKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELT
                     GRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLL
                     KSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGK
                     TPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQR
                     PSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQE
                     LLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRK
                     ACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFD
                     FYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYY
                     ARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
     misc_feature    222..476
                     /gene="AGO4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    507..659
                     /gene="AGO4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    660..1022
                     /gene="AGO4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(816..818,861..863,903..905,915..917,969..971,
                     990..992,996..998)
                     /gene="AGO4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1161..2468
                     /gene="AGO4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1572..1574,1584..1586,1620..1631,1638..1640,
                     1662..1664,1671..1673,1683..1685,1695..1697)
                     /gene="AGO4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1776..1778,1782..1784,2022..2024,2436..2438)
                     /gene="AGO4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 ctggcagctc cccgtggccc ccatcggctt gacctccaac cagcctgttt cagccgcctc
       61 gtcgtcctgg ccttggaact gttggaaaac caattcgact gttagccaat cattttcagg
      121 ttcagattcc taaaatagat gtgtatcact atgacgtgga tattaaacca gaaaaacggc
      181 ctcgtagagt caacagggac gtagtagata caatggtgcg gcacttcaag atgcaggtat
      241 ttggtgatcg gcagcctggc tatgatggca aaagaaacat gtacacagca catccactgc
      301 caattggacg ggagagggtt gatatggaag tgacccttcc aggtgagggt aaagaccaga
      361 cctttaaagt gtctgttcag tgggtatcag ttgtgagcct tcagttgctt ttagaagctt
      421 tggccgggca cttgaatgaa gtcccagatg actcagttca agcacttgat gttatcacaa
      481 gacaccttcc ctccatgagg tacactccag tgggtcgctc ctttttctca cctcctgaag
      541 gttactatca ccctctggga gggggcaggg aggtttggtt tggctttcat cagtctgtga
      601 gacctgccat gtggaatatg atgctgaata ttgatgtatc tgcaactgct ttctaccggg
      661 ctcagcctat cattgagttc atgtgtgagg ttttagacat tcagaacatc aatgaacaga
      721 ccaaacccct aacagactcc cagcgtgtca agtttaccaa agaaatcaga ggtcttaaag
      781 ttgaggtgac ccactgtgga cagatgaaac gaaaatatcg agtgtgtaat gtgactagac
      841 ggccagccag tcatcagact tttcccttac agctagaaaa tgggcaagca atggaatgta
      901 cagtagctca atattttaag caaaagtata gtctgcaact gaaatacccc catcttccct
      961 gtctccaggt gggacaagaa caaaagcata catacttgcc gcttgaggtt tgtaatatag
     1021 tggcaggaca acgatgtata aagaagctca cagacaatca gacttccacg atgatcaaag
     1081 ccacagcaag atctgctcct gacagacaag aagaaatcag tagactggtg aagagtaaca
     1141 gcatggtggg cggacctgat ccatatctta aagaatttgg tattgttgtc cacaatgaaa
     1201 tgactgagct cacaggcagg gtacttccag caccaatgct gcaatacgga ggccggaata
     1261 aaacggtagc cacacccaac cagggtgtct gggacatgcg aggaaagcag ttttatgctg
     1321 gcattgaaat taaagtttgg gcagttgctt gttttgcgcc tcagaaacaa tgtagggaag
     1381 atttactaaa gagtttcact gaccagctcc gtaaaatctc taaggatgca ggaatgccca
     1441 tccagggtca gccatgtttt tgcaagtatg cacaaggtgc agacagcgtg gagcccatgt
     1501 ttaaacacct gaaaatgaca tatgtgggcc tacagctgat agtggttatc ttgcctggga
     1561 agacgccagt atatgcggag gtgaaacgtg ttggagatac cctcctgggt atggctacac
     1621 agtgtgtcca ggtaaaaaat gtagtgaaga cctcacctca aaccctttcc aacctttgcc
     1681 tgaagataaa tgcaaagctc ggaggaatta acaatgtgct tgtacctcat caaaggccct
     1741 cggtgttcca gcagcctgtc atcttcctgg gagcggatgt cacgcacccc ccagcagggg
     1801 acgggaagaa gccttccatt gctgctgtcg ttggcagtat ggacggccac cccagccggt
     1861 actgtgccac tgttcgggtg cagacgtccc gccaggagat ctcccaggag ctcctctata
     1921 gtcaggaggt aatccaggac cttactaaca tggttcgaga gctgctgatc cagttctaca
     1981 aatccacacg cttcaaaccc actcgaatca tctattaccg tggaggggta tccgagggac
     2041 agatgaaaca ggtagcttgg ccagaactaa tagcaattcg aaaggcatgt attagtttgg
     2101 aagaagatta ccggccagga ataacctata ttgtggtgca gaaaagacat cacacacgac
     2161 tcttctgtgc agataaaaca gagagggtgg ggaaaagtgg caatgtacca gcaggcacta
     2221 ccgtggatag caccatcaca catccatctg agtttgactt ttacctctgt agtcatgcag
     2281 gaattcaggg aaccagccgt ccttcacatt accaggtctt gtgggatgac aactgcttca
     2341 ccgcagatga gctccagtta ctaacttacc agctatgtca tacctatgtg cggtgtacac
     2401 gctcagtctc tattccagcc cctgcctatt atgcccgcct tgtagcattc agagcaaggt
     2461 atcatctggt ggataaagat catgacagtg cggaaggcag tcatgtgtca ggacagagca
     2521 atggccgaga tcctcaggcc ttggctaaag ctgtgcagat ccaccatgat acccagcaca
     2581 cgatgtattt tgcctgagag tctcagaaaa agaactcaac cagtttggca ccccatgcag
     2641 gctcaaaatg tttcaaacgc ctactgcctc tagagagagc caagttgact tcaggtggtc
     2701 ctctaccagc aactcagaat agttgcactg aatctatact tcgcagcact gtctgatgca
     2761 tcaacaaaat tgagccattt tttttaaagt aatagatact cattgattat cttttctgat
     2821 gcactggact gaatttttac ctcatcatgc aaaggctaat cagcctgaac tttctaaagg
     2881 actttatgag aaaggtgtct atggactatt ttgctagctg tggtgttcac cgcatccctc
     2941 tagtcttaca agagaagctt attccttttt tctgtattcg tcgagtgggg tatatgcata
     3001 aacgggagag aaaaaccaat ctacttcagt tcagtgtaac tatttaattg tgtgggtcaa
     3061 taggcttttt aatggagatt tctgacttcg ccactgtaaa tgccttcaac gagcattaat
     3121 ttttgaaagt tttacagagt tttattagtt ttactacttt atgtattgat ctctacagac
     3181 ttgtgctggg gcaagtacag gctgccaggc aattgcacta tatctggctg cagattcaga
     3241 caggcagttc tcttatttgg ttgacttttg tgaatgtgta acacatgtga tgcatgtcat
     3301 ggtgacagat aacactgcca tggtaaaaag tactcgtgtt tccccccttt gaaaaaaatc
     3361 agcttttagt atttttcaga gtcttcaaaa atgcccattt tatgctgctg tgtggtttat
     3421 tagatctaaa tgatttttta acttttctca tagcaagtta actttggcaa taaacatttt
     3481 ttaaagtccc tcctcttcct ccccctgaca gtgtagtttt ttagatgaga tttcggtatg
     3541 atttttatca gctatttctt atagatcata atctggcaat ttttgaaact ggtcagaaaa
     3601 ggcatata
//
LOCUS       XM_032646658            7307 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 4
            (ZMYM4), transcript variant X1, mRNA.
ACCESSION   XM_032646658
VERSION     XM_032646658.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7307
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7307
                     /gene="ZMYM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761003"
     CDS             377..5026
                     /gene="ZMYM4"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 4 isoform X1"
                     /protein_id="XP_032502549.1"
                     /db_xref="GeneID:116761003"
                     /translation="MAEREVESSPRKRFEQKTGAVFDEIVENCGGIMDTEMSEDIDHN
                     LTPTLDSMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVGSDNEDEQDFSSKDNLV
                     SSIHTDDSLEVERRVTQHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFSLVRE
                     NSKETFSGKEKNRDLTYLEREKRLDKPHKELDSRLKSSFFDKAANQVEETLHTHLPQT
                     PETNFRDSSYPFANKESIGSELGNSFASNVRIKEEPLDDEYDKAMAPQQGLLDKIKDE
                     PDNAQEYSHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASSGMNKMLPSVP
                     ATAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARPPPPPTKKTCSS
                     CSKDILNPKDVISAQFENTTTSKDFCSQSCLSTYELKRKPVVTINTNSISTKCSMCQK
                     NAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHMLQIEG
                     QAKKFCSSTCVTAYKQKSAKITPCALCKSLRSSAEMIENTSSLGKTELFCSVNCLSAY
                     RVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIRNFCSYSCVVAFQNLFNKPAGMNS
                     SVVPLSQGQVIVSIPTGSTVSAGGGNTSAVSPTSISSSAAAGLQRLAAQSQHVGFARS
                     VVKLKCQHCNRLFATKPELLDYKGKMFQFCGKNCSDEYKKINNVMAMCEYCKIEKIVK
                     ETVRFSGADKSFCSEGCKLLYKHDLAKRWGNHCKMCSYCLQTSPKLVQNNLGGKVEEF
                     CCEECMSKYTVLFYQMAKCDGCKRQGKLSESLKWRGEMKHFCNLLCILMFCNQQSMCD
                     PPSQNNAGSVSMVPAASSGPPSHRKDSTPVIANVVSLASAPAAQPTVNSNSVLQGAVP
                     TVTAKIIGDASTQTDALKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTE
                     DTPTQPQVIVVPVPVPVFVPIPLHLYTQYAPVPFGIPVPMPVPMLIPSSMDNEDKVTE
                     NIEDIKEKLPSHPFEADLLEMAEMIAEDEEKEKTLSQGGSQTSEQELFLDTKIFEKDQ
                     GSTYSGDLESEAVSTPHSWEEELNHYALKSNTVQEADLEVKQFSKGETEQDLEADFPS
                     ESFDPLNKGQGIQARSRTRRRHRDGFPQPRRRGRKKSVVSVEPRSLIQGAFQGCSVSG
                     MTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGVEHASSSPCSDPLGSAQDHALSQESSE
                     PGCRVRSIKLKEDILSCTFAELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLF
                     ENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPI
                     VLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMRRTRTLKYSTKMTYLRFFPPSQKQETE
                     PDKLTVGKRKRSEDDEVPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRNDVFYL
                     QPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDVELSD"
     misc_feature    1385..1498
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    1544..1666
                     /gene="ZMYM4"
                     /note="metallochaperone-like domain; Region: TRASH;
                     smart00746"
                     /db_xref="CDD:214799"
     misc_feature    1820..1942
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    2426..2536
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    2552..2659
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    4445..4957
                     /gene="ZMYM4"
                     /note="Domain of unknown function (DUF3504); Region:
                     DUF3504; pfam12012"
                     /db_xref="CDD:463430"
ORIGIN      
        1 ggtgcgcctg cgcatcaagg gcgcgcgcaa ggggctggtt tggtgatccc tttaagaaac
       61 cgcaggcgga ggaatttctc tgagagaaaa taatcctact cacggggccc cttggaggcc
      121 attaaccccc cgagtcccgg ccccccccac cctttcccgg gcaggcccta ccgcctacgc
      181 gcgcacccgt gggatctcaa gatctccgac ccggcgcgcg gcatccgccc cctccccact
      241 gtaagcgcca ggctcggcca ggtccgggga agctgccgcg aggcggccgt gcctgcagtg
      301 tgggcggggg ccgggggccc gagaggttcc gccgccacag cgctgggagc cgcagtggtt
      361 ccgagcgggg ctcaacatgg cggagagaga ggtggagtcc agcccccgaa agaggtttga
      421 gcagaaaact ggtgcagttt ttgatgaaat tgtagagaac tgtggtggta tcatggatac
      481 agaaatgtct gaagatatag accacaactt aactcctacc cttgacagca tgtcttatgg
      541 aatgccgaat caaacaggat ctgaaaattc attgctggat gaagatgatt attttttgaa
      601 ctctggggat cttgcaggaa ttccagtcgt tggtagtgac aatgaggatg aacaggattt
      661 tagttcaaag gacaatcttg tttcttcaat tcatactgat gatagcttgg aagtagagag
      721 aagagtcaca cagcatgaat cagacaatga aaatgaaata cagattcaaa ataaattaaa
      781 aaaagacttt cctaaacaat ttgatcaggt ttctgtcttt aaatcaatac ggaaagattt
      841 tagtctagta agagaaaaca gcaaagagac tttttctgga aaggagaaaa atagagacct
      901 aacttatctt gaacgtgaaa aacggttgga taaaccccat aaagagttgg attcaaggtt
      961 gaaaagcagt ttttttgata aagcagctaa tcaagttgaa gaaacattac atacccattt
     1021 accacaaacc ccagaaacaa actttaggga ttccagctat ccatttgcca ataaagaatc
     1081 cattggttcg gaactgggga attcctttgc atcaaatgtt agaattaaag aagaaccttt
     1141 ggatgatgag tatgacaaag caatggcacc acagcaggga ctactagaca aaattaaaga
     1201 tgaacctgac aatgctcaag agtatagtca tggccaacag caaaaaactc aagaagggga
     1261 actgaaaatt agtgctgtgt tttcagtcag tggcagtcct cttgctccac agttgactac
     1321 tggctttcag ccttcactgg catcatctgg catgaataaa atgcttcctt cagttccagc
     1381 cacagctgtt cgagtttcct gttctggttg taaaaaaatc ctccagaagg ggcaaactgc
     1441 ttatcagagg aaagggtcta ctcagctatt ctgctctaca ctgtgcctca ctggatatac
     1501 agttccacct gcccgcccac cgcctcctcc cactaagaaa acttgttcaa gttgctcaaa
     1561 agacatttta aatccaaagg atgtgatcag tgcccagttt gaaaatacca ccactagtaa
     1621 agatttttgt agtcagtcat gtttgtcaac atatgaactg aaaagaaaac ctgttgttac
     1681 cataaatacg aatagcattt caaccaaatg cagcatgtgt cagaagaatg ctgttattcg
     1741 acatgaagtt aattaccaga atgtggtaca taaactttgc agtgatgcct gcttttctaa
     1801 gtttcgctct gctaacaacc tcaccatgaa ctgttgtgaa aactgtgggg gttactgcta
     1861 cagtggctct ggacaatgcc acatgctcca gatagaggga caggctaaga agttttgtag
     1921 ttccacgtgt gtcacagcat ataagcagaa atcagccaaa attacaccat gtgcgctttg
     1981 caaatcattg agatcctcag cagaaatgat tgaaaatacc agtagcttgg gaaagacaga
     2041 gcttttctgt tctgttaatt gcttatctgc ttacagagtt aaaatggtta cttctgcagg
     2101 tgtacaagtt cagtgtaaca gttgcaaaac ctcagcaatc cctcagtatc acctagccat
     2161 gtcagatgga agtattcgca acttctgcag ctacagttgt gtggtagctt tccagaattt
     2221 gttcaacaaa ccagcaggaa tgaactcttc agtggtgccc ttgtctcagg gccaagtaat
     2281 tgtaagcatc cctacaggtt caacagtgtc agcaggaggc ggtaacacct ctgctgtttc
     2341 tcccacctcc atcagtagct ctgctgcagc tggtctccag cgtcttgctg cccaatccca
     2401 acacgttggg tttgcacgaa gtgttgtaaa actcaagtgt cagcactgta accgtctctt
     2461 tgccacaaaa ccagaacttc ttgattataa gggtaaaatg tttcagttct gtggcaaaaa
     2521 ttgttctgat gaatataaga aaataaataa tgtaatggca atgtgtgaat attgtaaaat
     2581 tgagaaaatt gtaaaggaga ctgtgcgatt ctcaggtgct gacaagtcat tctgtagtga
     2641 aggttgcaaa ttgctttata aacatgactt ggcaaaacgc tggggaaatc actgtaaaat
     2701 gtgcagttat tgtttacaga catctcccaa attggtacag aataatttag gggggaaagt
     2761 agaagagttt tgttgtgaag agtgcatgtc caaatataca gttctgttct atcagatggc
     2821 caaatgtgat ggttgtaagc gacagggtaa gctcagtgag tccttgaaat ggcggggaga
     2881 aatgaaacat ttctgtaacc tgctttgtat cttgatgttc tgtaatcagc aaagtatgtg
     2941 tgatccacct tcacaaaata atgcaggaag tgtttccatg gtgccagctg cttcatcagg
     3001 gcccccatct cacagaaaag attcaactcc agttatagct aatgtagtat cattagcaag
     3061 tgctcctgct gctcagccca cagtgaattc taacagtgtc ttacaaggtg cagttccaac
     3121 agtaacagcg aaaatcattg gggatgcaag tacacaaaca gatgccctca aactgccacc
     3181 ttcccagcct ccaagacttt tgaagaataa agctttattg tgcaaaccca tcacacagac
     3241 caaggccact tcttgcaaac cacataccca aaacaaagaa tgccagacag aagacactcc
     3301 aactcagccc caagttatcg tggtgccagt tccagtacca gtgttcgtac ctatacctct
     3361 tcatctttat actcagtatg ccccagtccc atttggaatt ccagttccaa tgcctgtccc
     3421 tatgcttatt ccatcctcaa tggataatga agataaagtc actgagaata ttgaagacat
     3481 taaggaaaaa cttccctcac atccttttga agctgatctc cttgagatgg cagaaatgat
     3541 tgcagaagat gaagagaagg agaagactct atctcaggga ggatcccaaa cttctgaaca
     3601 ggagctcttt ctagacacca agatatttga aaaagaccaa ggaagtactt acagtggtga
     3661 ccttgaatca gaggcagtat ctactccaca tagctgggag gaagaattaa atcattatgc
     3721 cttaaagtca aatactgtgc aagaggctga tttagaagtg aagcagttct caaaagggga
     3781 aactgaacag gatctggaag cagattttcc atcagaatcc tttgacccac tgaataaagg
     3841 acagggaatc caggcacgtt cccgaacaag aagacgacac agagatggct tcccccagcc
     3901 cagacgaaga ggacggaaga agtctgtagt gtctgtggag cccaggagtc ttattcaagg
     3961 agcctttcaa gggtgctcag tgtctgggat gacactgaaa tacatgtatg gggtaaatgc
     4021 ctggaagaac tgggttcagt ggaaaaatgc caaggaagag cagggggatc tgaaatgtgg
     4081 agttgaacat gcctcatcta gcccgtgttc tgacccttta ggaagtgctc aagaccatgc
     4141 actctctcaa gaatcttcag agccaggctg tagagtccgc tctatcaagc tgaaggaaga
     4201 tattctgtcc tgcacttttg ctgagttgag tttaggctta tgccagttta ttcaagaagt
     4261 gcggagacca aatggtgaaa agtatgatcc agacagtatc ttatacttgt gccttggaat
     4321 tcagcagtac ctgtttgaaa atggtagaat agataacatt tttactgagc cctattccag
     4381 atttatgatt gaacttacca aactcttgaa aatatgggaa cctacaatac ttcctaatgg
     4441 ttacatgttc tctcgcattg aagaagagca tttgtgggag tgcaaacagc tgggcgctta
     4501 ctcaccaatc gtcctcttga acaccctcct tttcttcaat accaaatact ttcaactaaa
     4561 gaatgttact gagcacttga agctttcctt tgcccatgtg atgagacgga ccaggactct
     4621 gaagtacagt accaagatga catatctgag gttcttccca ccttcacaaa agcaggagac
     4681 agaaccagat aaactaactg ttggcaagag gaaacgaagc gaagatgatg aggttccagt
     4741 gggtgtggag atggcagaaa atactgacaa cccactaaga tgcccagtcc gactttatga
     4801 gttttacctg tccaaatgtt ctgaaagtgt gaagcagagg aatgatgtgt tttaccttca
     4861 acctgagcgc tcctgtgttc caaatagccc catgtggtac tccacgtttc caatagaccc
     4921 tgggaccctg gacaccatgt taacacgtat tctcatggtg agggaggtac atgaagaact
     4981 cgccaaagcc aaatcagaag actctgatgt tgaattatca gattaaagtg gaagtggggt
     5041 ccctattttc atacacgttg gtatgcacca aactgtgaat gcatccagct ttggaaaacg
     5101 atctatgagt ccaagtcctc ttgacttgat tataagataa tggaaaacag acgactcgtg
     5161 aaccacagtg tggatgtaca aatgaaaatt gaaggaaaga atatgaactg agaaatgttg
     5221 ttctttggca gtgatatagt tcttagacat cttcagaatg actaaccaac ttctctgagt
     5281 ggtgcataat cttattttgt ttgggaataa caaattgtgg aatattttta aggaaaactg
     5341 ttgtataaaa ctctaccata gtaaccttag accttagaga ggtagctttg gagtgaaacc
     5401 ttggctgcag taggctactt gggcaagccc tatgtaaaag tcaggggaga aatcagtacg
     5461 gagctaagag tggcatcaga tgaggactgt gggacccaga cttgaagacc caataaaaat
     5521 attcaacttt ttttaaaagg tagagagtga agtggtcttg attttgattt tcactgccaa
     5581 gccaattctg tgaaggatag aagcctctgg tgcttttgcc atggggtccc tcaaatcaga
     5641 ggaaaaggcc ttcactgctg ttcatgcagt aatgtgtccc tttcactttc tgggtctagc
     5701 cttctcagct gtgggtctgg atgtgggtaa attaagttca aggggccgaa actctgcaaa
     5761 atgattatgc acacagaaaa tctgtggagc ccattagacc ccaagtgtct tgaaatgttt
     5821 gcagaaaacc cactaaaatg cccacttctc tgggtgtcag cctttattgc tgctgtctca
     5881 cagcatgagc tgtggtacac agaaatgggg gttctccttt tgtttccatt ttatccccaa
     5941 atggcagctt ttctcccatt gttttatctt cctgtttccc agatagttcc tatcattttg
     6001 tcttttgcac cagtttctgg aggcccttgt catttcagaa agagtctctc tccttactgt
     6061 ggcaagcctg tgggtgattc cacaaagaca cagtgttact tagctatcag aattatggta
     6121 gaagaggtcc tagtatattc ctgtataaag catttggaag atgagcttgt tgcccaaaga
     6181 aacttgaaaa taggattttg gggttaggat acaaagacac tgactgtctt tcatatccac
     6241 gagcaggtct tcttatagca ttattccaga ctctagctgt tttagtagtt ctatgaggat
     6301 tgcaagtcct gggtgtgttt ggcatatgga tccttcttct tcatctccat tctgtttctt
     6361 ccccacaaaa ttttgaatca aagcgtttat gatattggcc aatcacggaa tttcgttagc
     6421 tgaggttaat ttgacccttt aatagaaatg agagaagtct aaaaagcctc ctagaaactt
     6481 taaccttgaa agactttaca gtatgtccca tttttcagat gggggtgaca ggttgttttt
     6541 tggggttttt ttcaataaat aaactcttta actacaataa aaattttaaa gtaggccttt
     6601 tgacattgtg tacttacggt tctgtccctc tgcctgtaac aaattttgtt tttgttacca
     6661 agaactatgt gaaagaagta aatctgcccc agttctgtat gattaattcc atctgtgttt
     6721 gtcatttctg actggaaaac ttcttacttc cagaccttgt ttgatatgga ggaaaaacag
     6781 ttggattgtc tgataagtct gccaataaac tatccagaaa catcaggtgt aatagtcccc
     6841 actatacaaa ttttatggtt tatataaaca ctaatatttc cccttctgta gaaaaacaaa
     6901 tatatggcat agtagataaa ctattgtaaa acactagaga gaaaaagaaa atctgtatct
     6961 tttaattgag aacagccaat atccaggtaa atggctgtac caggatgtca actgcatgtt
     7021 agtccataca gttgtccaga tcctgaatta attcgtaaaa ggaaatatta attattggtc
     7081 attcctcata agcatagcca ttgatatgta tgtctggtta tttgcttttt aaaattttat
     7141 taaaattatg ttaaattaca ttttcccccc ccaggggaga aaaattttat caaatatgag
     7201 aaaacattaa attatccatt ctgttctttt ttgtttttta aacacttggg ttttcacctt
     7261 gcaggaacca cagaaatatt cccgtagaat aaaacagtat atttgta
//
LOCUS       XM_032646668            7015 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 4
            (ZMYM4), transcript variant X2, mRNA.
ACCESSION   XM_032646668
VERSION     XM_032646668.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7015
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7015
                     /gene="ZMYM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761003"
     CDS             181..4734
                     /gene="ZMYM4"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 4 isoform X2"
                     /protein_id="XP_032502559.1"
                     /db_xref="GeneID:116761003"
                     /translation="MDTEMSEDIDHNLTPTLDSMSYGMPNQTGSENSLLDEDDYFLNS
                     GDLAGIPVVGSDNEDEQDFSSKDNLVSSIHTDDSLEVERRVTQHESDNENEIQIQNKL
                     KKDFPKQFDQVSVFKSIRKDFSLVRENSKETFSGKEKNRDLTYLEREKRLDKPHKELD
                     SRLKSSFFDKAANQVEETLHTHLPQTPETNFRDSSYPFANKESIGSELGNSFASNVRI
                     KEEPLDDEYDKAMAPQQGLLDKIKDEPDNAQEYSHGQQQKTQEGELKISAVFSVSGSP
                     LAPQLTTGFQPSLASSGMNKMLPSVPATAVRVSCSGCKKILQKGQTAYQRKGSTQLFC
                     STLCLTGYTVPPARPPPPPTKKTCSSCSKDILNPKDVISAQFENTTTSKDFCSQSCLS
                     TYELKRKPVVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNL
                     TMNCCENCGGYCYSGSGQCHMLQIEGQAKKFCSSTCVTAYKQKSAKITPCALCKSLRS
                     SAEMIENTSSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDG
                     SIRNFCSYSCVVAFQNLFNKPAGMNSSVVPLSQGQVIVSIPTGSTVSAGGGNTSAVSP
                     TSISSSAAAGLQRLAAQSQHVGFARSVVKLKCQHCNRLFATKPELLDYKGKMFQFCGK
                     NCSDEYKKINNVMAMCEYCKIEKIVKETVRFSGADKSFCSEGCKLLYKHDLAKRWGNH
                     CKMCSYCLQTSPKLVQNNLGGKVEEFCCEECMSKYTVLFYQMAKCDGCKRQGKLSESL
                     KWRGEMKHFCNLLCILMFCNQQSMCDPPSQNNAGSVSMVPAASSGPPSHRKDSTPVIA
                     NVVSLASAPAAQPTVNSNSVLQGAVPTVTAKIIGDASTQTDALKLPPSQPPRLLKNKA
                     LLCKPITQTKATSCKPHTQNKECQTEDTPTQPQVIVVPVPVPVFVPIPLHLYTQYAPV
                     PFGIPVPMPVPMLIPSSMDNEDKVTENIEDIKEKLPSHPFEADLLEMAEMIAEDEEKE
                     KTLSQGGSQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNT
                     VQEADLEVKQFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQPRRR
                     GRKKSVVSVEPRSLIQGAFQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGV
                     EHASSSPCSDPLGSAQDHALSQESSEPGCRVRSIKLKEDILSCTFAELSLGLCQFIQE
                     VRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTIL
                     PNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMR
                     RTRTLKYSTKMTYLRFFPPSQKQETEPDKLTVGKRKRSEDDEVPVGVEMAENTDNPLR
                     CPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRIL
                     MVREVHEELAKAKSEDSDVELSD"
     misc_feature    1093..1206
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    1252..1374
                     /gene="ZMYM4"
                     /note="metallochaperone-like domain; Region: TRASH;
                     smart00746"
                     /db_xref="CDD:214799"
     misc_feature    1528..1650
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    2134..2244
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    2260..2367
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    4153..4665
                     /gene="ZMYM4"
                     /note="Domain of unknown function (DUF3504); Region:
                     DUF3504; pfam12012"
                     /db_xref="CDD:463430"
ORIGIN      
        1 agtgtgggcg ggggccgggg gcccgagagg ttccgccgcc acagcgctgg gagccgcagt
       61 ggttccgagc ggggctcaac atggcggaga gagaggtgga gtccagcccc cgaaagaggg
      121 tagtttgagc agaaaactgg tgcagttttt gatgaaattg tagagaactg tggtggtatc
      181 atggatacag aaatgtctga agatatagac cacaacttaa ctcctaccct tgacagcatg
      241 tcttatggaa tgccgaatca aacaggatct gaaaattcat tgctggatga agatgattat
      301 tttttgaact ctggggatct tgcaggaatt ccagtcgttg gtagtgacaa tgaggatgaa
      361 caggatttta gttcaaagga caatcttgtt tcttcaattc atactgatga tagcttggaa
      421 gtagagagaa gagtcacaca gcatgaatca gacaatgaaa atgaaataca gattcaaaat
      481 aaattaaaaa aagactttcc taaacaattt gatcaggttt ctgtctttaa atcaatacgg
      541 aaagatttta gtctagtaag agaaaacagc aaagagactt tttctggaaa ggagaaaaat
      601 agagacctaa cttatcttga acgtgaaaaa cggttggata aaccccataa agagttggat
      661 tcaaggttga aaagcagttt ttttgataaa gcagctaatc aagttgaaga aacattacat
      721 acccatttac cacaaacccc agaaacaaac tttagggatt ccagctatcc atttgccaat
      781 aaagaatcca ttggttcgga actggggaat tcctttgcat caaatgttag aattaaagaa
      841 gaacctttgg atgatgagta tgacaaagca atggcaccac agcagggact actagacaaa
      901 attaaagatg aacctgacaa tgctcaagag tatagtcatg gccaacagca aaaaactcaa
      961 gaaggggaac tgaaaattag tgctgtgttt tcagtcagtg gcagtcctct tgctccacag
     1021 ttgactactg gctttcagcc ttcactggca tcatctggca tgaataaaat gcttccttca
     1081 gttccagcca cagctgttcg agtttcctgt tctggttgta aaaaaatcct ccagaagggg
     1141 caaactgctt atcagaggaa agggtctact cagctattct gctctacact gtgcctcact
     1201 ggatatacag ttccacctgc ccgcccaccg cctcctccca ctaagaaaac ttgttcaagt
     1261 tgctcaaaag acattttaaa tccaaaggat gtgatcagtg cccagtttga aaataccacc
     1321 actagtaaag atttttgtag tcagtcatgt ttgtcaacat atgaactgaa aagaaaacct
     1381 gttgttacca taaatacgaa tagcatttca accaaatgca gcatgtgtca gaagaatgct
     1441 gttattcgac atgaagttaa ttaccagaat gtggtacata aactttgcag tgatgcctgc
     1501 ttttctaagt ttcgctctgc taacaacctc accatgaact gttgtgaaaa ctgtgggggt
     1561 tactgctaca gtggctctgg acaatgccac atgctccaga tagagggaca ggctaagaag
     1621 ttttgtagtt ccacgtgtgt cacagcatat aagcagaaat cagccaaaat tacaccatgt
     1681 gcgctttgca aatcattgag atcctcagca gaaatgattg aaaataccag tagcttggga
     1741 aagacagagc ttttctgttc tgttaattgc ttatctgctt acagagttaa aatggttact
     1801 tctgcaggtg tacaagttca gtgtaacagt tgcaaaacct cagcaatccc tcagtatcac
     1861 ctagccatgt cagatggaag tattcgcaac ttctgcagct acagttgtgt ggtagctttc
     1921 cagaatttgt tcaacaaacc agcaggaatg aactcttcag tggtgccctt gtctcagggc
     1981 caagtaattg taagcatccc tacaggttca acagtgtcag caggaggcgg taacacctct
     2041 gctgtttctc ccacctccat cagtagctct gctgcagctg gtctccagcg tcttgctgcc
     2101 caatcccaac acgttgggtt tgcacgaagt gttgtaaaac tcaagtgtca gcactgtaac
     2161 cgtctctttg ccacaaaacc agaacttctt gattataagg gtaaaatgtt tcagttctgt
     2221 ggcaaaaatt gttctgatga atataagaaa ataaataatg taatggcaat gtgtgaatat
     2281 tgtaaaattg agaaaattgt aaaggagact gtgcgattct caggtgctga caagtcattc
     2341 tgtagtgaag gttgcaaatt gctttataaa catgacttgg caaaacgctg gggaaatcac
     2401 tgtaaaatgt gcagttattg tttacagaca tctcccaaat tggtacagaa taatttaggg
     2461 gggaaagtag aagagttttg ttgtgaagag tgcatgtcca aatatacagt tctgttctat
     2521 cagatggcca aatgtgatgg ttgtaagcga cagggtaagc tcagtgagtc cttgaaatgg
     2581 cggggagaaa tgaaacattt ctgtaacctg ctttgtatct tgatgttctg taatcagcaa
     2641 agtatgtgtg atccaccttc acaaaataat gcaggaagtg tttccatggt gccagctgct
     2701 tcatcagggc ccccatctca cagaaaagat tcaactccag ttatagctaa tgtagtatca
     2761 ttagcaagtg ctcctgctgc tcagcccaca gtgaattcta acagtgtctt acaaggtgca
     2821 gttccaacag taacagcgaa aatcattggg gatgcaagta cacaaacaga tgccctcaaa
     2881 ctgccacctt cccagcctcc aagacttttg aagaataaag ctttattgtg caaacccatc
     2941 acacagacca aggccacttc ttgcaaacca catacccaaa acaaagaatg ccagacagaa
     3001 gacactccaa ctcagcccca agttatcgtg gtgccagttc cagtaccagt gttcgtacct
     3061 atacctcttc atctttatac tcagtatgcc ccagtcccat ttggaattcc agttccaatg
     3121 cctgtcccta tgcttattcc atcctcaatg gataatgaag ataaagtcac tgagaatatt
     3181 gaagacatta aggaaaaact tccctcacat ccttttgaag ctgatctcct tgagatggca
     3241 gaaatgattg cagaagatga agagaaggag aagactctat ctcagggagg atcccaaact
     3301 tctgaacagg agctctttct agacaccaag atatttgaaa aagaccaagg aagtacttac
     3361 agtggtgacc ttgaatcaga ggcagtatct actccacata gctgggagga agaattaaat
     3421 cattatgcct taaagtcaaa tactgtgcaa gaggctgatt tagaagtgaa gcagttctca
     3481 aaaggggaaa ctgaacagga tctggaagca gattttccat cagaatcctt tgacccactg
     3541 aataaaggac agggaatcca ggcacgttcc cgaacaagaa gacgacacag agatggcttc
     3601 ccccagccca gacgaagagg acggaagaag tctgtagtgt ctgtggagcc caggagtctt
     3661 attcaaggag cctttcaagg gtgctcagtg tctgggatga cactgaaata catgtatggg
     3721 gtaaatgcct ggaagaactg ggttcagtgg aaaaatgcca aggaagagca gggggatctg
     3781 aaatgtggag ttgaacatgc ctcatctagc ccgtgttctg accctttagg aagtgctcaa
     3841 gaccatgcac tctctcaaga atcttcagag ccaggctgta gagtccgctc tatcaagctg
     3901 aaggaagata ttctgtcctg cacttttgct gagttgagtt taggcttatg ccagtttatt
     3961 caagaagtgc ggagaccaaa tggtgaaaag tatgatccag acagtatctt atacttgtgc
     4021 cttggaattc agcagtacct gtttgaaaat ggtagaatag ataacatttt tactgagccc
     4081 tattccagat ttatgattga acttaccaaa ctcttgaaaa tatgggaacc tacaatactt
     4141 cctaatggtt acatgttctc tcgcattgaa gaagagcatt tgtgggagtg caaacagctg
     4201 ggcgcttact caccaatcgt cctcttgaac accctccttt tcttcaatac caaatacttt
     4261 caactaaaga atgttactga gcacttgaag ctttcctttg cccatgtgat gagacggacc
     4321 aggactctga agtacagtac caagatgaca tatctgaggt tcttcccacc ttcacaaaag
     4381 caggagacag aaccagataa actaactgtt ggcaagagga aacgaagcga agatgatgag
     4441 gttccagtgg gtgtggagat ggcagaaaat actgacaacc cactaagatg cccagtccga
     4501 ctttatgagt tttacctgtc caaatgttct gaaagtgtga agcagaggaa tgatgtgttt
     4561 taccttcaac ctgagcgctc ctgtgttcca aatagcccca tgtggtactc cacgtttcca
     4621 atagaccctg ggaccctgga caccatgtta acacgtattc tcatggtgag ggaggtacat
     4681 gaagaactcg ccaaagccaa atcagaagac tctgatgttg aattatcaga ttaaagtgga
     4741 agtggggtcc ctattttcat acacgttggt atgcaccaaa ctgtgaatgc atccagcttt
     4801 ggaaaacgat ctatgagtcc aagtcctctt gacttgatta taagataatg gaaaacagac
     4861 gactcgtgaa ccacagtgtg gatgtacaaa tgaaaattga aggaaagaat atgaactgag
     4921 aaatgttgtt ctttggcagt gatatagttc ttagacatct tcagaatgac taaccaactt
     4981 ctctgagtgg tgcataatct tattttgttt gggaataaca aattgtggaa tatttttaag
     5041 gaaaactgtt gtataaaact ctaccatagt aaccttagac cttagagagg tagctttgga
     5101 gtgaaacctt ggctgcagta ggctacttgg gcaagcccta tgtaaaagtc aggggagaaa
     5161 tcagtacgga gctaagagtg gcatcagatg aggactgtgg gacccagact tgaagaccca
     5221 ataaaaatat tcaacttttt ttaaaaggta gagagtgaag tggtcttgat tttgattttc
     5281 actgccaagc caattctgtg aaggatagaa gcctctggtg cttttgccat ggggtccctc
     5341 aaatcagagg aaaaggcctt cactgctgtt catgcagtaa tgtgtccctt tcactttctg
     5401 ggtctagcct tctcagctgt gggtctggat gtgggtaaat taagttcaag gggccgaaac
     5461 tctgcaaaat gattatgcac acagaaaatc tgtggagccc attagacccc aagtgtcttg
     5521 aaatgtttgc agaaaaccca ctaaaatgcc cacttctctg ggtgtcagcc tttattgctg
     5581 ctgtctcaca gcatgagctg tggtacacag aaatgggggt tctccttttg tttccatttt
     5641 atccccaaat ggcagctttt ctcccattgt tttatcttcc tgtttcccag atagttccta
     5701 tcattttgtc ttttgcacca gtttctggag gcccttgtca tttcagaaag agtctctctc
     5761 cttactgtgg caagcctgtg ggtgattcca caaagacaca gtgttactta gctatcagaa
     5821 ttatggtaga agaggtccta gtatattcct gtataaagca tttggaagat gagcttgttg
     5881 cccaaagaaa cttgaaaata ggattttggg gttaggatac aaagacactg actgtctttc
     5941 atatccacga gcaggtcttc ttatagcatt attccagact ctagctgttt tagtagttct
     6001 atgaggattg caagtcctgg gtgtgtttgg catatggatc cttcttcttc atctccattc
     6061 tgtttcttcc ccacaaaatt ttgaatcaaa gcgtttatga tattggccaa tcacggaatt
     6121 tcgttagctg aggttaattt gaccctttaa tagaaatgag agaagtctaa aaagcctcct
     6181 agaaacttta accttgaaag actttacagt atgtcccatt tttcagatgg gggtgacagg
     6241 ttgttttttg gggttttttt caataaataa actctttaac tacaataaaa attttaaagt
     6301 aggccttttg acattgtgta cttacggttc tgtccctctg cctgtaacaa attttgtttt
     6361 tgttaccaag aactatgtga aagaagtaaa tctgccccag ttctgtatga ttaattccat
     6421 ctgtgtttgt catttctgac tggaaaactt cttacttcca gaccttgttt gatatggagg
     6481 aaaaacagtt ggattgtctg ataagtctgc caataaacta tccagaaaca tcaggtgtaa
     6541 tagtccccac tatacaaatt ttatggttta tataaacact aatatttccc cttctgtaga
     6601 aaaacaaata tatggcatag tagataaact attgtaaaac actagagaga aaaagaaaat
     6661 ctgtatcttt taattgagaa cagccaatat ccaggtaaat ggctgtacca ggatgtcaac
     6721 tgcatgttag tccatacagt tgtccagatc ctgaattaat tcgtaaaagg aaatattaat
     6781 tattggtcat tcctcataag catagccatt gatatgtatg tctggttatt tgctttttaa
     6841 aattttatta aaattatgtt aaattacatt ttcccccccc aggggagaaa aattttatca
     6901 aatatgagaa aacattaaat tatccattct gttctttttt gttttttaaa cacttgggtt
     6961 ttcaccttgc aggaaccaca gaaatattcc cgtagaataa aacagtatat ttgta
//
LOCUS       XM_032646674            6853 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 4
            (ZMYM4), transcript variant X3, mRNA.
ACCESSION   XM_032646674
VERSION     XM_032646674.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6853
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6853
                     /gene="ZMYM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761003"
     CDS             133..4572
                     /gene="ZMYM4"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 4 isoform X3"
                     /protein_id="XP_032502565.1"
                     /db_xref="GeneID:116761003"
                     /translation="MAEREVESSPRKRFEQKTGAVFDEIVENCGGIMDTEMSEDIDHN
                     LTPTLDSMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVGSDNEDEQDFSSKDNLV
                     SSIHTDDSLEVERRVTQHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFSLVRE
                     NSKETFSGKEKNRDLTYLEREKRLDKPHKELDSRLKSSFFDKAANQVEETLHTHLPQT
                     PETNFRDSSYPFANKESIGSELGNSFASNVRIKEEPLDDEYDKAMAPQQGLLDKIKDE
                     PDNAQEYSHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASSGMNKMLPSVP
                     ATAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARPPPPPTKKTCSS
                     CSKDILNPKDVISAQFENTTTSKDFCSQSCLSTYELKRKPVVTINTNSISTKCSMCQK
                     NAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHMLQIEG
                     QAKKFCSSTCVTAYKQKSAKITPCALCKSLRSSAEMIENTSSLGKTELFCSVNCLSAY
                     RVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIRNFCSYSCVVAFQNLFNKPAGMNS
                     SVVPLSQGQVIGKMFQFCGKNCSDEYKKINNVMAMCEYCKIEKIVKETVRFSGADKSF
                     CSEGCKLLYKHDLAKRWGNHCKMCSYCLQTSPKLVQNNLGGKVEEFCCEECMSKYTVL
                     FYQMAKCDGCKRQGKLSESLKWRGEMKHFCNLLCILMFCNQQSMCDPPSQNNAGSVSM
                     VPAASSGPPSHRKDSTPVIANVVSLASAPAAQPTVNSNSVLQGAVPTVTAKIIGDAST
                     QTDALKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTEDTPTQPQVIVVP
                     VPVPVFVPIPLHLYTQYAPVPFGIPVPMPVPMLIPSSMDNEDKVTENIEDIKEKLPSH
                     PFEADLLEMAEMIAEDEEKEKTLSQGGSQTSEQELFLDTKIFEKDQGSTYSGDLESEA
                     VSTPHSWEEELNHYALKSNTVQEADLEVKQFSKGETEQDLEADFPSESFDPLNKGQGI
                     QARSRTRRRHRDGFPQPRRRGRKKSVVSVEPRSLIQGAFQGCSVSGMTLKYMYGVNAW
                     KNWVQWKNAKEEQGDLKCGVEHASSSPCSDPLGSAQDHALSQESSEPGCRVRSIKLKE
                     DILSCTFAELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEP
                     YSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTK
                     YFQLKNVTEHLKLSFAHVMRRTRTLKYSTKMTYLRFFPPSQKQETEPDKLTVGKRKRS
                     EDDEVPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPM
                     WYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDVELSD"
     misc_feature    1141..1254
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    1300..1422
                     /gene="ZMYM4"
                     /note="metallochaperone-like domain; Region: TRASH;
                     smart00746"
                     /db_xref="CDD:214799"
     misc_feature    1576..1698
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    2098..2205
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    3991..4503
                     /gene="ZMYM4"
                     /note="Domain of unknown function (DUF3504); Region:
                     DUF3504; pfam12012"
                     /db_xref="CDD:463430"
ORIGIN      
        1 gcgccaggct cggccaggtc cggggaagct gccgcgaggc ggccgtgcct gcagtgtggg
       61 cgggggccgg gggcccgaga ggttccgccg ccacagcgct gggagccgca gtggttccga
      121 gcggggctca acatggcgga gagagaggtg gagtccagcc cccgaaagag gtttgagcag
      181 aaaactggtg cagtttttga tgaaattgta gagaactgtg gtggtatcat ggatacagaa
      241 atgtctgaag atatagacca caacttaact cctacccttg acagcatgtc ttatggaatg
      301 ccgaatcaaa caggatctga aaattcattg ctggatgaag atgattattt tttgaactct
      361 ggggatcttg caggaattcc agtcgttggt agtgacaatg aggatgaaca ggattttagt
      421 tcaaaggaca atcttgtttc ttcaattcat actgatgata gcttggaagt agagagaaga
      481 gtcacacagc atgaatcaga caatgaaaat gaaatacaga ttcaaaataa attaaaaaaa
      541 gactttccta aacaatttga tcaggtttct gtctttaaat caatacggaa agattttagt
      601 ctagtaagag aaaacagcaa agagactttt tctggaaagg agaaaaatag agacctaact
      661 tatcttgaac gtgaaaaacg gttggataaa ccccataaag agttggattc aaggttgaaa
      721 agcagttttt ttgataaagc agctaatcaa gttgaagaaa cattacatac ccatttacca
      781 caaaccccag aaacaaactt tagggattcc agctatccat ttgccaataa agaatccatt
      841 ggttcggaac tggggaattc ctttgcatca aatgttagaa ttaaagaaga acctttggat
      901 gatgagtatg acaaagcaat ggcaccacag cagggactac tagacaaaat taaagatgaa
      961 cctgacaatg ctcaagagta tagtcatggc caacagcaaa aaactcaaga aggggaactg
     1021 aaaattagtg ctgtgttttc agtcagtggc agtcctcttg ctccacagtt gactactggc
     1081 tttcagcctt cactggcatc atctggcatg aataaaatgc ttccttcagt tccagccaca
     1141 gctgttcgag tttcctgttc tggttgtaaa aaaatcctcc agaaggggca aactgcttat
     1201 cagaggaaag ggtctactca gctattctgc tctacactgt gcctcactgg atatacagtt
     1261 ccacctgccc gcccaccgcc tcctcccact aagaaaactt gttcaagttg ctcaaaagac
     1321 attttaaatc caaaggatgt gatcagtgcc cagtttgaaa ataccaccac tagtaaagat
     1381 ttttgtagtc agtcatgttt gtcaacatat gaactgaaaa gaaaacctgt tgttaccata
     1441 aatacgaata gcatttcaac caaatgcagc atgtgtcaga agaatgctgt tattcgacat
     1501 gaagttaatt accagaatgt ggtacataaa ctttgcagtg atgcctgctt ttctaagttt
     1561 cgctctgcta acaacctcac catgaactgt tgtgaaaact gtgggggtta ctgctacagt
     1621 ggctctggac aatgccacat gctccagata gagggacagg ctaagaagtt ttgtagttcc
     1681 acgtgtgtca cagcatataa gcagaaatca gccaaaatta caccatgtgc gctttgcaaa
     1741 tcattgagat cctcagcaga aatgattgaa aataccagta gcttgggaaa gacagagctt
     1801 ttctgttctg ttaattgctt atctgcttac agagttaaaa tggttacttc tgcaggtgta
     1861 caagttcagt gtaacagttg caaaacctca gcaatccctc agtatcacct agccatgtca
     1921 gatggaagta ttcgcaactt ctgcagctac agttgtgtgg tagctttcca gaatttgttc
     1981 aacaaaccag caggaatgaa ctcttcagtg gtgcccttgt ctcagggcca agtaattggt
     2041 aaaatgtttc agttctgtgg caaaaattgt tctgatgaat ataagaaaat aaataatgta
     2101 atggcaatgt gtgaatattg taaaattgag aaaattgtaa aggagactgt gcgattctca
     2161 ggtgctgaca agtcattctg tagtgaaggt tgcaaattgc tttataaaca tgacttggca
     2221 aaacgctggg gaaatcactg taaaatgtgc agttattgtt tacagacatc tcccaaattg
     2281 gtacagaata atttaggggg gaaagtagaa gagttttgtt gtgaagagtg catgtccaaa
     2341 tatacagttc tgttctatca gatggccaaa tgtgatggtt gtaagcgaca gggtaagctc
     2401 agtgagtcct tgaaatggcg gggagaaatg aaacatttct gtaacctgct ttgtatcttg
     2461 atgttctgta atcagcaaag tatgtgtgat ccaccttcac aaaataatgc aggaagtgtt
     2521 tccatggtgc cagctgcttc atcagggccc ccatctcaca gaaaagattc aactccagtt
     2581 atagctaatg tagtatcatt agcaagtgct cctgctgctc agcccacagt gaattctaac
     2641 agtgtcttac aaggtgcagt tccaacagta acagcgaaaa tcattgggga tgcaagtaca
     2701 caaacagatg ccctcaaact gccaccttcc cagcctccaa gacttttgaa gaataaagct
     2761 ttattgtgca aacccatcac acagaccaag gccacttctt gcaaaccaca tacccaaaac
     2821 aaagaatgcc agacagaaga cactccaact cagccccaag ttatcgtggt gccagttcca
     2881 gtaccagtgt tcgtacctat acctcttcat ctttatactc agtatgcccc agtcccattt
     2941 ggaattccag ttccaatgcc tgtccctatg cttattccat cctcaatgga taatgaagat
     3001 aaagtcactg agaatattga agacattaag gaaaaacttc cctcacatcc ttttgaagct
     3061 gatctccttg agatggcaga aatgattgca gaagatgaag agaaggagaa gactctatct
     3121 cagggaggat cccaaacttc tgaacaggag ctctttctag acaccaagat atttgaaaaa
     3181 gaccaaggaa gtacttacag tggtgacctt gaatcagagg cagtatctac tccacatagc
     3241 tgggaggaag aattaaatca ttatgcctta aagtcaaata ctgtgcaaga ggctgattta
     3301 gaagtgaagc agttctcaaa aggggaaact gaacaggatc tggaagcaga ttttccatca
     3361 gaatcctttg acccactgaa taaaggacag ggaatccagg cacgttcccg aacaagaaga
     3421 cgacacagag atggcttccc ccagcccaga cgaagaggac ggaagaagtc tgtagtgtct
     3481 gtggagccca ggagtcttat tcaaggagcc tttcaagggt gctcagtgtc tgggatgaca
     3541 ctgaaataca tgtatggggt aaatgcctgg aagaactggg ttcagtggaa aaatgccaag
     3601 gaagagcagg gggatctgaa atgtggagtt gaacatgcct catctagccc gtgttctgac
     3661 cctttaggaa gtgctcaaga ccatgcactc tctcaagaat cttcagagcc aggctgtaga
     3721 gtccgctcta tcaagctgaa ggaagatatt ctgtcctgca cttttgctga gttgagttta
     3781 ggcttatgcc agtttattca agaagtgcgg agaccaaatg gtgaaaagta tgatccagac
     3841 agtatcttat acttgtgcct tggaattcag cagtacctgt ttgaaaatgg tagaatagat
     3901 aacattttta ctgagcccta ttccagattt atgattgaac ttaccaaact cttgaaaata
     3961 tgggaaccta caatacttcc taatggttac atgttctctc gcattgaaga agagcatttg
     4021 tgggagtgca aacagctggg cgcttactca ccaatcgtcc tcttgaacac cctccttttc
     4081 ttcaatacca aatactttca actaaagaat gttactgagc acttgaagct ttcctttgcc
     4141 catgtgatga gacggaccag gactctgaag tacagtacca agatgacata tctgaggttc
     4201 ttcccacctt cacaaaagca ggagacagaa ccagataaac taactgttgg caagaggaaa
     4261 cgaagcgaag atgatgaggt tccagtgggt gtggagatgg cagaaaatac tgacaaccca
     4321 ctaagatgcc cagtccgact ttatgagttt tacctgtcca aatgttctga aagtgtgaag
     4381 cagaggaatg atgtgtttta ccttcaacct gagcgctcct gtgttccaaa tagccccatg
     4441 tggtactcca cgtttccaat agaccctggg accctggaca ccatgttaac acgtattctc
     4501 atggtgaggg aggtacatga agaactcgcc aaagccaaat cagaagactc tgatgttgaa
     4561 ttatcagatt aaagtggaag tggggtccct attttcatac acgttggtat gcaccaaact
     4621 gtgaatgcat ccagctttgg aaaacgatct atgagtccaa gtcctcttga cttgattata
     4681 agataatgga aaacagacga ctcgtgaacc acagtgtgga tgtacaaatg aaaattgaag
     4741 gaaagaatat gaactgagaa atgttgttct ttggcagtga tatagttctt agacatcttc
     4801 agaatgacta accaacttct ctgagtggtg cataatctta ttttgtttgg gaataacaaa
     4861 ttgtggaata tttttaagga aaactgttgt ataaaactct accatagtaa ccttagacct
     4921 tagagaggta gctttggagt gaaaccttgg ctgcagtagg ctacttgggc aagccctatg
     4981 taaaagtcag gggagaaatc agtacggagc taagagtggc atcagatgag gactgtggga
     5041 cccagacttg aagacccaat aaaaatattc aacttttttt aaaaggtaga gagtgaagtg
     5101 gtcttgattt tgattttcac tgccaagcca attctgtgaa ggatagaagc ctctggtgct
     5161 tttgccatgg ggtccctcaa atcagaggaa aaggccttca ctgctgttca tgcagtaatg
     5221 tgtccctttc actttctggg tctagccttc tcagctgtgg gtctggatgt gggtaaatta
     5281 agttcaaggg gccgaaactc tgcaaaatga ttatgcacac agaaaatctg tggagcccat
     5341 tagaccccaa gtgtcttgaa atgtttgcag aaaacccact aaaatgccca cttctctggg
     5401 tgtcagcctt tattgctgct gtctcacagc atgagctgtg gtacacagaa atgggggttc
     5461 tccttttgtt tccattttat ccccaaatgg cagcttttct cccattgttt tatcttcctg
     5521 tttcccagat agttcctatc attttgtctt ttgcaccagt ttctggaggc ccttgtcatt
     5581 tcagaaagag tctctctcct tactgtggca agcctgtggg tgattccaca aagacacagt
     5641 gttacttagc tatcagaatt atggtagaag aggtcctagt atattcctgt ataaagcatt
     5701 tggaagatga gcttgttgcc caaagaaact tgaaaatagg attttggggt taggatacaa
     5761 agacactgac tgtctttcat atccacgagc aggtcttctt atagcattat tccagactct
     5821 agctgtttta gtagttctat gaggattgca agtcctgggt gtgtttggca tatggatcct
     5881 tcttcttcat ctccattctg tttcttcccc acaaaatttt gaatcaaagc gtttatgata
     5941 ttggccaatc acggaatttc gttagctgag gttaatttga ccctttaata gaaatgagag
     6001 aagtctaaaa agcctcctag aaactttaac cttgaaagac tttacagtat gtcccatttt
     6061 tcagatgggg gtgacaggtt gttttttggg gtttttttca ataaataaac tctttaacta
     6121 caataaaaat tttaaagtag gccttttgac attgtgtact tacggttctg tccctctgcc
     6181 tgtaacaaat tttgtttttg ttaccaagaa ctatgtgaaa gaagtaaatc tgccccagtt
     6241 ctgtatgatt aattccatct gtgtttgtca tttctgactg gaaaacttct tacttccaga
     6301 ccttgtttga tatggaggaa aaacagttgg attgtctgat aagtctgcca ataaactatc
     6361 cagaaacatc aggtgtaata gtccccacta tacaaatttt atggtttata taaacactaa
     6421 tatttcccct tctgtagaaa aacaaatata tggcatagta gataaactat tgtaaaacac
     6481 tagagagaaa aagaaaatct gtatctttta attgagaaca gccaatatcc aggtaaatgg
     6541 ctgtaccagg atgtcaactg catgttagtc catacagttg tccagatcct gaattaattc
     6601 gtaaaaggaa atattaatta ttggtcattc ctcataagca tagccattga tatgtatgtc
     6661 tggttatttg ctttttaaaa ttttattaaa attatgttaa attacatttt ccccccccag
     6721 gggagaaaaa ttttatcaaa tatgagaaaa cattaaatta tccattctgt tcttttttgt
     6781 tttttaaaca cttgggtttt caccttgcag gaaccacaga aatattcccg tagaataaaa
     6841 cagtatattt gta
//
LOCUS       XM_032646680            7109 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 4
            (ZMYM4), transcript variant X4, mRNA.
ACCESSION   XM_032646680
VERSION     XM_032646680.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7109
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7109
                     /gene="ZMYM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116761003"
     CDS             275..4828
                     /gene="ZMYM4"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 4 isoform X2"
                     /protein_id="XP_032502571.1"
                     /db_xref="GeneID:116761003"
                     /translation="MDTEMSEDIDHNLTPTLDSMSYGMPNQTGSENSLLDEDDYFLNS
                     GDLAGIPVVGSDNEDEQDFSSKDNLVSSIHTDDSLEVERRVTQHESDNENEIQIQNKL
                     KKDFPKQFDQVSVFKSIRKDFSLVRENSKETFSGKEKNRDLTYLEREKRLDKPHKELD
                     SRLKSSFFDKAANQVEETLHTHLPQTPETNFRDSSYPFANKESIGSELGNSFASNVRI
                     KEEPLDDEYDKAMAPQQGLLDKIKDEPDNAQEYSHGQQQKTQEGELKISAVFSVSGSP
                     LAPQLTTGFQPSLASSGMNKMLPSVPATAVRVSCSGCKKILQKGQTAYQRKGSTQLFC
                     STLCLTGYTVPPARPPPPPTKKTCSSCSKDILNPKDVISAQFENTTTSKDFCSQSCLS
                     TYELKRKPVVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNL
                     TMNCCENCGGYCYSGSGQCHMLQIEGQAKKFCSSTCVTAYKQKSAKITPCALCKSLRS
                     SAEMIENTSSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDG
                     SIRNFCSYSCVVAFQNLFNKPAGMNSSVVPLSQGQVIVSIPTGSTVSAGGGNTSAVSP
                     TSISSSAAAGLQRLAAQSQHVGFARSVVKLKCQHCNRLFATKPELLDYKGKMFQFCGK
                     NCSDEYKKINNVMAMCEYCKIEKIVKETVRFSGADKSFCSEGCKLLYKHDLAKRWGNH
                     CKMCSYCLQTSPKLVQNNLGGKVEEFCCEECMSKYTVLFYQMAKCDGCKRQGKLSESL
                     KWRGEMKHFCNLLCILMFCNQQSMCDPPSQNNAGSVSMVPAASSGPPSHRKDSTPVIA
                     NVVSLASAPAAQPTVNSNSVLQGAVPTVTAKIIGDASTQTDALKLPPSQPPRLLKNKA
                     LLCKPITQTKATSCKPHTQNKECQTEDTPTQPQVIVVPVPVPVFVPIPLHLYTQYAPV
                     PFGIPVPMPVPMLIPSSMDNEDKVTENIEDIKEKLPSHPFEADLLEMAEMIAEDEEKE
                     KTLSQGGSQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNT
                     VQEADLEVKQFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQPRRR
                     GRKKSVVSVEPRSLIQGAFQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGV
                     EHASSSPCSDPLGSAQDHALSQESSEPGCRVRSIKLKEDILSCTFAELSLGLCQFIQE
                     VRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTIL
                     PNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMR
                     RTRTLKYSTKMTYLRFFPPSQKQETEPDKLTVGKRKRSEDDEVPVGVEMAENTDNPLR
                     CPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRIL
                     MVREVHEELAKAKSEDSDVELSD"
     misc_feature    1187..1300
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    1346..1468
                     /gene="ZMYM4"
                     /note="metallochaperone-like domain; Region: TRASH;
                     smart00746"
                     /db_xref="CDD:214799"
     misc_feature    1622..1744
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    2228..2338
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    2354..2461
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    4247..4759
                     /gene="ZMYM4"
                     /note="Domain of unknown function (DUF3504); Region:
                     DUF3504; pfam12012"
                     /db_xref="CDD:463430"
ORIGIN      
        1 tttcccgggc aggccctacc gcctacgcgc gcacccgtgg gatctcaaga tctccgaccc
       61 ggcgcgcggc atccgccccc tccccactgt aagcgccagg ctcggccagg tccggggaag
      121 ctgccgcgag gcggccgtgc ctgcagtgtg ggcgggggcc gggggcccga gaggttccgc
      181 cgccacagcg ctgggagccg cagtggttcc gagcggggct caacatggcg gagagagagg
      241 tggagtccag cccccgaaag agggtggtgg tatcatggat acagaaatgt ctgaagatat
      301 agaccacaac ttaactccta cccttgacag catgtcttat ggaatgccga atcaaacagg
      361 atctgaaaat tcattgctgg atgaagatga ttattttttg aactctgggg atcttgcagg
      421 aattccagtc gttggtagtg acaatgagga tgaacaggat tttagttcaa aggacaatct
      481 tgtttcttca attcatactg atgatagctt ggaagtagag agaagagtca cacagcatga
      541 atcagacaat gaaaatgaaa tacagattca aaataaatta aaaaaagact ttcctaaaca
      601 atttgatcag gtttctgtct ttaaatcaat acggaaagat tttagtctag taagagaaaa
      661 cagcaaagag actttttctg gaaaggagaa aaatagagac ctaacttatc ttgaacgtga
      721 aaaacggttg gataaacccc ataaagagtt ggattcaagg ttgaaaagca gtttttttga
      781 taaagcagct aatcaagttg aagaaacatt acatacccat ttaccacaaa ccccagaaac
      841 aaactttagg gattccagct atccatttgc caataaagaa tccattggtt cggaactggg
      901 gaattccttt gcatcaaatg ttagaattaa agaagaacct ttggatgatg agtatgacaa
      961 agcaatggca ccacagcagg gactactaga caaaattaaa gatgaacctg acaatgctca
     1021 agagtatagt catggccaac agcaaaaaac tcaagaaggg gaactgaaaa ttagtgctgt
     1081 gttttcagtc agtggcagtc ctcttgctcc acagttgact actggctttc agccttcact
     1141 ggcatcatct ggcatgaata aaatgcttcc ttcagttcca gccacagctg ttcgagtttc
     1201 ctgttctggt tgtaaaaaaa tcctccagaa ggggcaaact gcttatcaga ggaaagggtc
     1261 tactcagcta ttctgctcta cactgtgcct cactggatat acagttccac ctgcccgccc
     1321 accgcctcct cccactaaga aaacttgttc aagttgctca aaagacattt taaatccaaa
     1381 ggatgtgatc agtgcccagt ttgaaaatac caccactagt aaagattttt gtagtcagtc
     1441 atgtttgtca acatatgaac tgaaaagaaa acctgttgtt accataaata cgaatagcat
     1501 ttcaaccaaa tgcagcatgt gtcagaagaa tgctgttatt cgacatgaag ttaattacca
     1561 gaatgtggta cataaacttt gcagtgatgc ctgcttttct aagtttcgct ctgctaacaa
     1621 cctcaccatg aactgttgtg aaaactgtgg gggttactgc tacagtggct ctggacaatg
     1681 ccacatgctc cagatagagg gacaggctaa gaagttttgt agttccacgt gtgtcacagc
     1741 atataagcag aaatcagcca aaattacacc atgtgcgctt tgcaaatcat tgagatcctc
     1801 agcagaaatg attgaaaata ccagtagctt gggaaagaca gagcttttct gttctgttaa
     1861 ttgcttatct gcttacagag ttaaaatggt tacttctgca ggtgtacaag ttcagtgtaa
     1921 cagttgcaaa acctcagcaa tccctcagta tcacctagcc atgtcagatg gaagtattcg
     1981 caacttctgc agctacagtt gtgtggtagc tttccagaat ttgttcaaca aaccagcagg
     2041 aatgaactct tcagtggtgc ccttgtctca gggccaagta attgtaagca tccctacagg
     2101 ttcaacagtg tcagcaggag gcggtaacac ctctgctgtt tctcccacct ccatcagtag
     2161 ctctgctgca gctggtctcc agcgtcttgc tgcccaatcc caacacgttg ggtttgcacg
     2221 aagtgttgta aaactcaagt gtcagcactg taaccgtctc tttgccacaa aaccagaact
     2281 tcttgattat aagggtaaaa tgtttcagtt ctgtggcaaa aattgttctg atgaatataa
     2341 gaaaataaat aatgtaatgg caatgtgtga atattgtaaa attgagaaaa ttgtaaagga
     2401 gactgtgcga ttctcaggtg ctgacaagtc attctgtagt gaaggttgca aattgcttta
     2461 taaacatgac ttggcaaaac gctggggaaa tcactgtaaa atgtgcagtt attgtttaca
     2521 gacatctccc aaattggtac agaataattt aggggggaaa gtagaagagt tttgttgtga
     2581 agagtgcatg tccaaatata cagttctgtt ctatcagatg gccaaatgtg atggttgtaa
     2641 gcgacagggt aagctcagtg agtccttgaa atggcgggga gaaatgaaac atttctgtaa
     2701 cctgctttgt atcttgatgt tctgtaatca gcaaagtatg tgtgatccac cttcacaaaa
     2761 taatgcagga agtgtttcca tggtgccagc tgcttcatca gggcccccat ctcacagaaa
     2821 agattcaact ccagttatag ctaatgtagt atcattagca agtgctcctg ctgctcagcc
     2881 cacagtgaat tctaacagtg tcttacaagg tgcagttcca acagtaacag cgaaaatcat
     2941 tggggatgca agtacacaaa cagatgccct caaactgcca ccttcccagc ctccaagact
     3001 tttgaagaat aaagctttat tgtgcaaacc catcacacag accaaggcca cttcttgcaa
     3061 accacatacc caaaacaaag aatgccagac agaagacact ccaactcagc cccaagttat
     3121 cgtggtgcca gttccagtac cagtgttcgt acctatacct cttcatcttt atactcagta
     3181 tgccccagtc ccatttggaa ttccagttcc aatgcctgtc cctatgctta ttccatcctc
     3241 aatggataat gaagataaag tcactgagaa tattgaagac attaaggaaa aacttccctc
     3301 acatcctttt gaagctgatc tccttgagat ggcagaaatg attgcagaag atgaagagaa
     3361 ggagaagact ctatctcagg gaggatccca aacttctgaa caggagctct ttctagacac
     3421 caagatattt gaaaaagacc aaggaagtac ttacagtggt gaccttgaat cagaggcagt
     3481 atctactcca catagctggg aggaagaatt aaatcattat gccttaaagt caaatactgt
     3541 gcaagaggct gatttagaag tgaagcagtt ctcaaaaggg gaaactgaac aggatctgga
     3601 agcagatttt ccatcagaat cctttgaccc actgaataaa ggacagggaa tccaggcacg
     3661 ttcccgaaca agaagacgac acagagatgg cttcccccag cccagacgaa gaggacggaa
     3721 gaagtctgta gtgtctgtgg agcccaggag tcttattcaa ggagcctttc aagggtgctc
     3781 agtgtctggg atgacactga aatacatgta tggggtaaat gcctggaaga actgggttca
     3841 gtggaaaaat gccaaggaag agcaggggga tctgaaatgt ggagttgaac atgcctcatc
     3901 tagcccgtgt tctgaccctt taggaagtgc tcaagaccat gcactctctc aagaatcttc
     3961 agagccaggc tgtagagtcc gctctatcaa gctgaaggaa gatattctgt cctgcacttt
     4021 tgctgagttg agtttaggct tatgccagtt tattcaagaa gtgcggagac caaatggtga
     4081 aaagtatgat ccagacagta tcttatactt gtgccttgga attcagcagt acctgtttga
     4141 aaatggtaga atagataaca tttttactga gccctattcc agatttatga ttgaacttac
     4201 caaactcttg aaaatatggg aacctacaat acttcctaat ggttacatgt tctctcgcat
     4261 tgaagaagag catttgtggg agtgcaaaca gctgggcgct tactcaccaa tcgtcctctt
     4321 gaacaccctc cttttcttca ataccaaata ctttcaacta aagaatgtta ctgagcactt
     4381 gaagctttcc tttgcccatg tgatgagacg gaccaggact ctgaagtaca gtaccaagat
     4441 gacatatctg aggttcttcc caccttcaca aaagcaggag acagaaccag ataaactaac
     4501 tgttggcaag aggaaacgaa gcgaagatga tgaggttcca gtgggtgtgg agatggcaga
     4561 aaatactgac aacccactaa gatgcccagt ccgactttat gagttttacc tgtccaaatg
     4621 ttctgaaagt gtgaagcaga ggaatgatgt gttttacctt caacctgagc gctcctgtgt
     4681 tccaaatagc cccatgtggt actccacgtt tccaatagac cctgggaccc tggacaccat
     4741 gttaacacgt attctcatgg tgagggaggt acatgaagaa ctcgccaaag ccaaatcaga
     4801 agactctgat gttgaattat cagattaaag tggaagtggg gtccctattt tcatacacgt
     4861 tggtatgcac caaactgtga atgcatccag ctttggaaaa cgatctatga gtccaagtcc
     4921 tcttgacttg attataagat aatggaaaac agacgactcg tgaaccacag tgtggatgta
     4981 caaatgaaaa ttgaaggaaa gaatatgaac tgagaaatgt tgttctttgg cagtgatata
     5041 gttcttagac atcttcagaa tgactaacca acttctctga gtggtgcata atcttatttt
     5101 gtttgggaat aacaaattgt ggaatatttt taaggaaaac tgttgtataa aactctacca
     5161 tagtaacctt agaccttaga gaggtagctt tggagtgaaa ccttggctgc agtaggctac
     5221 ttgggcaagc cctatgtaaa agtcagggga gaaatcagta cggagctaag agtggcatca
     5281 gatgaggact gtgggaccca gacttgaaga cccaataaaa atattcaact ttttttaaaa
     5341 ggtagagagt gaagtggtct tgattttgat tttcactgcc aagccaattc tgtgaaggat
     5401 agaagcctct ggtgcttttg ccatggggtc cctcaaatca gaggaaaagg ccttcactgc
     5461 tgttcatgca gtaatgtgtc cctttcactt tctgggtcta gccttctcag ctgtgggtct
     5521 ggatgtgggt aaattaagtt caaggggccg aaactctgca aaatgattat gcacacagaa
     5581 aatctgtgga gcccattaga ccccaagtgt cttgaaatgt ttgcagaaaa cccactaaaa
     5641 tgcccacttc tctgggtgtc agcctttatt gctgctgtct cacagcatga gctgtggtac
     5701 acagaaatgg gggttctcct tttgtttcca ttttatcccc aaatggcagc ttttctccca
     5761 ttgttttatc ttcctgtttc ccagatagtt cctatcattt tgtcttttgc accagtttct
     5821 ggaggccctt gtcatttcag aaagagtctc tctccttact gtggcaagcc tgtgggtgat
     5881 tccacaaaga cacagtgtta cttagctatc agaattatgg tagaagaggt cctagtatat
     5941 tcctgtataa agcatttgga agatgagctt gttgcccaaa gaaacttgaa aataggattt
     6001 tggggttagg atacaaagac actgactgtc tttcatatcc acgagcaggt cttcttatag
     6061 cattattcca gactctagct gttttagtag ttctatgagg attgcaagtc ctgggtgtgt
     6121 ttggcatatg gatccttctt cttcatctcc attctgtttc ttccccacaa aattttgaat
     6181 caaagcgttt atgatattgg ccaatcacgg aatttcgtta gctgaggtta atttgaccct
     6241 ttaatagaaa tgagagaagt ctaaaaagcc tcctagaaac tttaaccttg aaagacttta
     6301 cagtatgtcc catttttcag atgggggtga caggttgttt tttggggttt ttttcaataa
     6361 ataaactctt taactacaat aaaaatttta aagtaggcct tttgacattg tgtacttacg
     6421 gttctgtccc tctgcctgta acaaattttg tttttgttac caagaactat gtgaaagaag
     6481 taaatctgcc ccagttctgt atgattaatt ccatctgtgt ttgtcatttc tgactggaaa
     6541 acttcttact tccagacctt gtttgatatg gaggaaaaac agttggattg tctgataagt
     6601 ctgccaataa actatccaga aacatcaggt gtaatagtcc ccactataca aattttatgg
     6661 tttatataaa cactaatatt tccccttctg tagaaaaaca aatatatggc atagtagata
     6721 aactattgta aaacactaga gagaaaaaga aaatctgtat cttttaattg agaacagcca
     6781 atatccaggt aaatggctgt accaggatgt caactgcatg ttagtccata cagttgtcca
     6841 gatcctgaat taattcgtaa aaggaaatat taattattgg tcattcctca taagcatagc
     6901 cattgatatg tatgtctggt tatttgcttt ttaaaatttt attaaaatta tgttaaatta
     6961 cattttcccc ccccagggga gaaaaatttt atcaaatatg agaaaacatt aaattatcca
     7021 ttctgttctt ttttgttttt taaacacttg ggttttcacc ttgcaggaac cacagaaata
     7081 ttcccgtaga ataaaacagt atatttgta
//
LOCUS       XM_032646688            6227 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 4
            (ZMYM4), transcript variant X5, mRNA.
ACCESSION   XM_032646688
VERSION     XM_032646688.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6227
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6227
                     /gene="ZMYM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116761003"
     CDS             80..3946
                     /gene="ZMYM4"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 4 isoform X4"
                     /protein_id="XP_032502579.1"
                     /db_xref="GeneID:116761003"
                     /translation="MLKKLEEIMEKGRQNYHHLLEYSHGQQQKTQEGELKISAVFSVS
                     GSPLAPQLTTGFQPSLASSGMNKMLPSVPATAVRVSCSGCKKILQKGQTAYQRKGSTQ
                     LFCSTLCLTGYTVPPARPPPPPTKKTCSSCSKDILNPKDVISAQFENTTTSKDFCSQS
                     CLSTYELKRKPVVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSA
                     NNLTMNCCENCGGYCYSGSGQCHMLQIEGQAKKFCSSTCVTAYKQKSAKITPCALCKS
                     LRSSAEMIENTSSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAM
                     SDGSIRNFCSYSCVVAFQNLFNKPAGMNSSVVPLSQGQVIVSIPTGSTVSAGGGNTSA
                     VSPTSISSSAAAGLQRLAAQSQHVGFARSVVKLKCQHCNRLFATKPELLDYKGKMFQF
                     CGKNCSDEYKKINNVMAMCEYCKIEKIVKETVRFSGADKSFCSEGCKLLYKHDLAKRW
                     GNHCKMCSYCLQTSPKLVQNNLGGKVEEFCCEECMSKYTVLFYQMAKCDGCKRQGKLS
                     ESLKWRGEMKHFCNLLCILMFCNQQSMCDPPSQNNAGSVSMVPAASSGPPSHRKDSTP
                     VIANVVSLASAPAAQPTVNSNSVLQGAVPTVTAKIIGDASTQTDALKLPPSQPPRLLK
                     NKALLCKPITQTKATSCKPHTQNKECQTEDTPTQPQVIVVPVPVPVFVPIPLHLYTQY
                     APVPFGIPVPMPVPMLIPSSMDNEDKVTENIEDIKEKLPSHPFEADLLEMAEMIAEDE
                     EKEKTLSQGGSQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALK
                     SNTVQEADLEVKQFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQP
                     RRRGRKKSVVSVEPRSLIQGAFQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLK
                     CGVEHASSSPCSDPLGSAQDHALSQESSEPGCRVRSIKLKEDILSCTFAELSLGLCQF
                     IQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEP
                     TILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAH
                     VMRRTRTLKYSTKMTYLRFFPPSQKQETEPDKLTVGKRKRSEDDEVPVGVEMAENTDN
                     PLRCPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLT
                     RILMVREVHEELAKAKSEDSDVELSD"
     misc_feature    305..418
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    464..586
                     /gene="ZMYM4"
                     /note="metallochaperone-like domain; Region: TRASH;
                     smart00746"
                     /db_xref="CDD:214799"
     misc_feature    740..862
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    1472..1579
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    3365..3877
                     /gene="ZMYM4"
                     /note="Domain of unknown function (DUF3504); Region:
                     DUF3504; pfam12012"
                     /db_xref="CDD:463430"
ORIGIN      
        1 tgttaataat aactaaatga acacaaatta ctgatgtcag cattattatt taactcttgt
       61 tggattttcg acccaataca tgttaaagaa attagaagaa ataatggaaa aggggagaca
      121 aaattatcat catttactgg agtatagtca tggccaacag caaaaaactc aagaagggga
      181 actgaaaatt agtgctgtgt tttcagtcag tggcagtcct cttgctccac agttgactac
      241 tggctttcag ccttcactgg catcatctgg catgaataaa atgcttcctt cagttccagc
      301 cacagctgtt cgagtttcct gttctggttg taaaaaaatc ctccagaagg ggcaaactgc
      361 ttatcagagg aaagggtcta ctcagctatt ctgctctaca ctgtgcctca ctggatatac
      421 agttccacct gcccgcccac cgcctcctcc cactaagaaa acttgttcaa gttgctcaaa
      481 agacatttta aatccaaagg atgtgatcag tgcccagttt gaaaatacca ccactagtaa
      541 agatttttgt agtcagtcat gtttgtcaac atatgaactg aaaagaaaac ctgttgttac
      601 cataaatacg aatagcattt caaccaaatg cagcatgtgt cagaagaatg ctgttattcg
      661 acatgaagtt aattaccaga atgtggtaca taaactttgc agtgatgcct gcttttctaa
      721 gtttcgctct gctaacaacc tcaccatgaa ctgttgtgaa aactgtgggg gttactgcta
      781 cagtggctct ggacaatgcc acatgctcca gatagaggga caggctaaga agttttgtag
      841 ttccacgtgt gtcacagcat ataagcagaa atcagccaaa attacaccat gtgcgctttg
      901 caaatcattg agatcctcag cagaaatgat tgaaaatacc agtagcttgg gaaagacaga
      961 gcttttctgt tctgttaatt gcttatctgc ttacagagtt aaaatggtta cttctgcagg
     1021 tgtacaagtt cagtgtaaca gttgcaaaac ctcagcaatc cctcagtatc acctagccat
     1081 gtcagatgga agtattcgca acttctgcag ctacagttgt gtggtagctt tccagaattt
     1141 gttcaacaaa ccagcaggaa tgaactcttc agtggtgccc ttgtctcagg gccaagtaat
     1201 tgtaagcatc cctacaggtt caacagtgtc agcaggaggc ggtaacacct ctgctgtttc
     1261 tcccacctcc atcagtagct ctgctgcagc tggtctccag cgtcttgctg cccaatccca
     1321 acacgttggg tttgcacgaa gtgttgtaaa actcaagtgt cagcactgta accgtctctt
     1381 tgccacaaaa ccagaacttc ttgattataa gggtaaaatg tttcagttct gtggcaaaaa
     1441 ttgttctgat gaatataaga aaataaataa tgtaatggca atgtgtgaat attgtaaaat
     1501 tgagaaaatt gtaaaggaga ctgtgcgatt ctcaggtgct gacaagtcat tctgtagtga
     1561 aggttgcaaa ttgctttata aacatgactt ggcaaaacgc tggggaaatc actgtaaaat
     1621 gtgcagttat tgtttacaga catctcccaa attggtacag aataatttag gggggaaagt
     1681 agaagagttt tgttgtgaag agtgcatgtc caaatataca gttctgttct atcagatggc
     1741 caaatgtgat ggttgtaagc gacagggtaa gctcagtgag tccttgaaat ggcggggaga
     1801 aatgaaacat ttctgtaacc tgctttgtat cttgatgttc tgtaatcagc aaagtatgtg
     1861 tgatccacct tcacaaaata atgcaggaag tgtttccatg gtgccagctg cttcatcagg
     1921 gcccccatct cacagaaaag attcaactcc agttatagct aatgtagtat cattagcaag
     1981 tgctcctgct gctcagccca cagtgaattc taacagtgtc ttacaaggtg cagttccaac
     2041 agtaacagcg aaaatcattg gggatgcaag tacacaaaca gatgccctca aactgccacc
     2101 ttcccagcct ccaagacttt tgaagaataa agctttattg tgcaaaccca tcacacagac
     2161 caaggccact tcttgcaaac cacataccca aaacaaagaa tgccagacag aagacactcc
     2221 aactcagccc caagttatcg tggtgccagt tccagtacca gtgttcgtac ctatacctct
     2281 tcatctttat actcagtatg ccccagtccc atttggaatt ccagttccaa tgcctgtccc
     2341 tatgcttatt ccatcctcaa tggataatga agataaagtc actgagaata ttgaagacat
     2401 taaggaaaaa cttccctcac atccttttga agctgatctc cttgagatgg cagaaatgat
     2461 tgcagaagat gaagagaagg agaagactct atctcaggga ggatcccaaa cttctgaaca
     2521 ggagctcttt ctagacacca agatatttga aaaagaccaa ggaagtactt acagtggtga
     2581 ccttgaatca gaggcagtat ctactccaca tagctgggag gaagaattaa atcattatgc
     2641 cttaaagtca aatactgtgc aagaggctga tttagaagtg aagcagttct caaaagggga
     2701 aactgaacag gatctggaag cagattttcc atcagaatcc tttgacccac tgaataaagg
     2761 acagggaatc caggcacgtt cccgaacaag aagacgacac agagatggct tcccccagcc
     2821 cagacgaaga ggacggaaga agtctgtagt gtctgtggag cccaggagtc ttattcaagg
     2881 agcctttcaa gggtgctcag tgtctgggat gacactgaaa tacatgtatg gggtaaatgc
     2941 ctggaagaac tgggttcagt ggaaaaatgc caaggaagag cagggggatc tgaaatgtgg
     3001 agttgaacat gcctcatcta gcccgtgttc tgacccttta ggaagtgctc aagaccatgc
     3061 actctctcaa gaatcttcag agccaggctg tagagtccgc tctatcaagc tgaaggaaga
     3121 tattctgtcc tgcacttttg ctgagttgag tttaggctta tgccagttta ttcaagaagt
     3181 gcggagacca aatggtgaaa agtatgatcc agacagtatc ttatacttgt gccttggaat
     3241 tcagcagtac ctgtttgaaa atggtagaat agataacatt tttactgagc cctattccag
     3301 atttatgatt gaacttacca aactcttgaa aatatgggaa cctacaatac ttcctaatgg
     3361 ttacatgttc tctcgcattg aagaagagca tttgtgggag tgcaaacagc tgggcgctta
     3421 ctcaccaatc gtcctcttga acaccctcct tttcttcaat accaaatact ttcaactaaa
     3481 gaatgttact gagcacttga agctttcctt tgcccatgtg atgagacgga ccaggactct
     3541 gaagtacagt accaagatga catatctgag gttcttccca ccttcacaaa agcaggagac
     3601 agaaccagat aaactaactg ttggcaagag gaaacgaagc gaagatgatg aggttccagt
     3661 gggtgtggag atggcagaaa atactgacaa cccactaaga tgcccagtcc gactttatga
     3721 gttttacctg tccaaatgtt ctgaaagtgt gaagcagagg aatgatgtgt tttaccttca
     3781 acctgagcgc tcctgtgttc caaatagccc catgtggtac tccacgtttc caatagaccc
     3841 tgggaccctg gacaccatgt taacacgtat tctcatggtg agggaggtac atgaagaact
     3901 cgccaaagcc aaatcagaag actctgatgt tgaattatca gattaaagtg gaagtggggt
     3961 ccctattttc atacacgttg gtatgcacca aactgtgaat gcatccagct ttggaaaacg
     4021 atctatgagt ccaagtcctc ttgacttgat tataagataa tggaaaacag acgactcgtg
     4081 aaccacagtg tggatgtaca aatgaaaatt gaaggaaaga atatgaactg agaaatgttg
     4141 ttctttggca gtgatatagt tcttagacat cttcagaatg actaaccaac ttctctgagt
     4201 ggtgcataat cttattttgt ttgggaataa caaattgtgg aatattttta aggaaaactg
     4261 ttgtataaaa ctctaccata gtaaccttag accttagaga ggtagctttg gagtgaaacc
     4321 ttggctgcag taggctactt gggcaagccc tatgtaaaag tcaggggaga aatcagtacg
     4381 gagctaagag tggcatcaga tgaggactgt gggacccaga cttgaagacc caataaaaat
     4441 attcaacttt ttttaaaagg tagagagtga agtggtcttg attttgattt tcactgccaa
     4501 gccaattctg tgaaggatag aagcctctgg tgcttttgcc atggggtccc tcaaatcaga
     4561 ggaaaaggcc ttcactgctg ttcatgcagt aatgtgtccc tttcactttc tgggtctagc
     4621 cttctcagct gtgggtctgg atgtgggtaa attaagttca aggggccgaa actctgcaaa
     4681 atgattatgc acacagaaaa tctgtggagc ccattagacc ccaagtgtct tgaaatgttt
     4741 gcagaaaacc cactaaaatg cccacttctc tgggtgtcag cctttattgc tgctgtctca
     4801 cagcatgagc tgtggtacac agaaatgggg gttctccttt tgtttccatt ttatccccaa
     4861 atggcagctt ttctcccatt gttttatctt cctgtttccc agatagttcc tatcattttg
     4921 tcttttgcac cagtttctgg aggcccttgt catttcagaa agagtctctc tccttactgt
     4981 ggcaagcctg tgggtgattc cacaaagaca cagtgttact tagctatcag aattatggta
     5041 gaagaggtcc tagtatattc ctgtataaag catttggaag atgagcttgt tgcccaaaga
     5101 aacttgaaaa taggattttg gggttaggat acaaagacac tgactgtctt tcatatccac
     5161 gagcaggtct tcttatagca ttattccaga ctctagctgt tttagtagtt ctatgaggat
     5221 tgcaagtcct gggtgtgttt ggcatatgga tccttcttct tcatctccat tctgtttctt
     5281 ccccacaaaa ttttgaatca aagcgtttat gatattggcc aatcacggaa tttcgttagc
     5341 tgaggttaat ttgacccttt aatagaaatg agagaagtct aaaaagcctc ctagaaactt
     5401 taaccttgaa agactttaca gtatgtccca tttttcagat gggggtgaca ggttgttttt
     5461 tggggttttt ttcaataaat aaactcttta actacaataa aaattttaaa gtaggccttt
     5521 tgacattgtg tacttacggt tctgtccctc tgcctgtaac aaattttgtt tttgttacca
     5581 agaactatgt gaaagaagta aatctgcccc agttctgtat gattaattcc atctgtgttt
     5641 gtcatttctg actggaaaac ttcttacttc cagaccttgt ttgatatgga ggaaaaacag
     5701 ttggattgtc tgataagtct gccaataaac tatccagaaa catcaggtgt aatagtcccc
     5761 actatacaaa ttttatggtt tatataaaca ctaatatttc cccttctgta gaaaaacaaa
     5821 tatatggcat agtagataaa ctattgtaaa acactagaga gaaaaagaaa atctgtatct
     5881 tttaattgag aacagccaat atccaggtaa atggctgtac caggatgtca actgcatgtt
     5941 agtccataca gttgtccaga tcctgaatta attcgtaaaa ggaaatatta attattggtc
     6001 attcctcata agcatagcca ttgatatgta tgtctggtta tttgcttttt aaaattttat
     6061 taaaattatg ttaaattaca ttttcccccc ccaggggaga aaaattttat caaatatgag
     6121 aaaacattaa attatccatt ctgttctttt ttgtttttta aacacttggg ttttcacctt
     6181 gcaggaacca cagaaatatt cccgtagaat aaaacagtat atttgta
//
LOCUS       XR_004351910            4245 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 4
            (ZMYM4), transcript variant X6, misc_RNA.
ACCESSION   XR_004351910
VERSION     XR_004351910.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4245
                     /gene="ZMYM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761003"
     misc_RNA        1..4245
                     /gene="ZMYM4"
                     /product="zinc finger MYM-type containing 4, transcript
                     variant X6"
                     /db_xref="GeneID:116761003"
ORIGIN      
        1 ggtgcgcctg cgcatcaagg gcgcgcgcaa ggggctggtt tggtgatccc tttaagaaac
       61 cgcaggcgga ggaatttctc tgagagaaaa taatcctact cacggggccc cttggaggcc
      121 attaaccccc cgagtcccgg ccccccccac cctttcccgg gcaggcccta ccgcctacgc
      181 gcgcacccgt gggatctcaa gatctccgac ccggcgcgcg gcatccgccc cctccccact
      241 gtaagcgcca ggctcggcca ggtccgggga agctgccgcg aggcggccgt gcctgcagtg
      301 tgggcggggg ccgggggccc gagaggttcc gccgccacag cgctgggagc cgcagtggtt
      361 ccgagcgggg ctcaacatgg cggagagaga ggtggagtcc agcccccgaa agaggtttga
      421 gcagaaaact ggtgcagttt ttgatgaaat tgtagagaac tgtggtggta tcatggatac
      481 agaaatgtct gaagatatag accacaactt aactcctacc cttgacagca tgtcttatgg
      541 aatgccgaat caaacaggat ctgaaaattc attgctggat gaagatgatt attttttgaa
      601 ctctggggat cttgcaggaa ttccagtcgt tggtagtgac aatgaggatg aacaggattt
      661 tagttcaaag gacaatcttg tttcttcaat tcatactgat gatagcttgg aagtagagag
      721 aagagtcaca cagcatgaat cagacaatga aaatgaaata cagattcaaa ataaattaaa
      781 aaaagacttt cctaaacaat ttgatcaggt ttctgtcttt aaatcaatac ggaaagattt
      841 tagtctagta agagaaaaca gcaaagagac tttttctgga aaggagaaaa atagagacct
      901 aacttatctt gaacgtgaaa aacggttgga taaaccccat aaagagttgg attcaaggtt
      961 gaaaagcagt ttttttgata aagcagctaa tcaagttgaa gaaacattac atacccattt
     1021 accacaaacc ccagaaacaa actttaggga ttccagctat ccatttgcca ataaagaatc
     1081 cattggttcg gaactgggga attcctttgc atcaaatgtt agaattaaag aagaaccttt
     1141 ggatgatgag tatgacaaag caatggcacc acagcaggga ctactagaca aaattaaaga
     1201 tgaacctgac aatgctcaag agtatagtca tggccaacag caaaaaactc aagaagggga
     1261 actgaaaatt agtgctgtgt tttcagtcag tggcagtcct cttgctccac agttgactac
     1321 tggctttcag ccttcactgg catcatctgg catgaataaa atgcttcctt cagttccagc
     1381 cacagctgtt cgagtttcct gttctggttg taaaaaaatc ctccagaagg ggcaaactgc
     1441 ttatcagagg aaagggtcta ctcagctatt ctgctctaca ctgtgcctca ctggatatac
     1501 agttccacct gcccgcccac cgcctcctcc cactaagaaa acttgttcaa gttgctcaaa
     1561 agacatttta aatccaaagg atgtgatcag tgcccagttt gaaaatacca ccactagtaa
     1621 agatttttgt agtcagtcat gtttgtcaac atatgaactg aaaagaaaac ctgttgttac
     1681 cataaatacg aatagcattt caaccaaatg cagcatgtgt cagaagaatg ctgttattcg
     1741 acatgaagtt aattaccaga atgtggtaca taaactttgc agtgatgcct gcttttctaa
     1801 gtttcgctct gctaacaacc tcaccatgaa ctgttgtgaa aactgtgggg gttactgcta
     1861 cagtggctct ggacaatgcc acatgctcca gatagaggga caggctaaga agttttgtag
     1921 ttccacgtgt gtcacagcat ataagcagaa atcagccaaa attacaccat gtgcgctttg
     1981 caaatcattg agatcctcag cagaaatgat tgaaaatacc agtagcttgg gaaagacaga
     2041 gcttttctgt tctgttaatt gcttatctgc ttacagagtt aaaatggtta cttctgcagg
     2101 tgtacaagtt cagtgtaaca gttgcaaaac ctcagcaatc cctcagtatc acctagccat
     2161 gtcagatgga agtattcgca acttctgcag ctacagttgt gtggtagctt tccagaattt
     2221 gttcaacaaa ccagcaggaa tgaactcttc agtggtgccc ttgtctcagg gccaagtaat
     2281 tgtaagcatc cctacaggtt caacagtgtc agcaggaggc ggtaacacct ctgctgtttc
     2341 tcccacctcc atcagtagct ctgctgcagc tggtctccag cgtcttgctg cccaatccca
     2401 acacgttggg tttgcacgaa gtgttgtaaa actcaagtgt cagcactgta accgtctctt
     2461 tgccacaaaa ccagaacttc ttgattataa gggtaaaatg tttcagttct gtggcaaaaa
     2521 ttgttctgat gaatataaga aaataaataa tgtaatggca atgtgtgaat attgtaaaat
     2581 tgagaaaatt gtaaaggaga ctgtgcgatt ctcaggtgct gacaagtcat tctgtagtga
     2641 aggttgcaaa ttgctttata aacatgactt ggcaaaacgc tggggaaatc actgtaaaat
     2701 gtgcagttat tgtttacaga catctcccaa attggtacag aataatttag gggggaaagt
     2761 agaagagttt tgttgtgaag agtgcatgtc caaatataca gttctgttct atcagatggc
     2821 caaatgtgat ggttgtaagc gacagggtaa gctcagtgag tccttgaaat ggcggggaga
     2881 aatgaaacat ttctgtaacc tgctttgtat cttgatgttc tgtaatcagc aaagtatgtg
     2941 tgatccacct tcacaaaata atgcaggaag tgtttccatg gtgccagctg cttcatcagg
     3001 gcccccatct cacagaaaag attcaactcc agttatagct aatgtagtat cattagcaag
     3061 tgctcctgct gctcagccca cagtgaattc taacagtgtc ttacaaggtg cagttccaac
     3121 agtaacagcg aaaatcattg gggatgcaag tacacaaaca gatgccctca aactgccacc
     3181 ttcccagcct ccaagacttt tgaagaataa agctttattg tgcaaaccca tcacacagac
     3241 caaggccact tcttgcaaac cacataccca aaacaaagaa tgccagacag aagacactcc
     3301 aactcagccc caagttatcg tggtgccagt tccagtacca gtgttcgtac ctatacctct
     3361 tcatctttat actcagtatg ccccagtccc atttggaatt ccagttccaa tgcctgtccc
     3421 tatgcttatt ccatcctcaa tggataatga agataaagtc actgagaata ttgaagacat
     3481 taaggaaaaa cttccctcac atccttttga agctgatctc cttgagatgg cagaaatgat
     3541 tgcagaagat gaagagaagg agaagactct atctcaggga ggatcccaaa cttctgaaca
     3601 ggagctcttt ctagacacca agatatttga aaaagaccaa ggaagtactt acagtggtga
     3661 ccttgaatca gaggcagtat ctactccaca tagctgggag gaagaattaa atcattatgc
     3721 cttaaagtca aatactgtgc aagaggctga tttagaagtg aagcagttct caaaagggga
     3781 aactgaacag gatctggaag cagattttcc atcagaatcc tttgacccac tgaataaagg
     3841 acagggaatc caggcacgtt cccgaacaag aagacgacac agagatggct tcccccagcc
     3901 cagacgaaga ggacggaaga agtctgtagt gtctgtggag cccaggagtc ttattcaagg
     3961 agcctttcaa gggtgctcag tgtctgggat gacactgaaa tacatgtatg gggagttgaa
     4021 catgcctcat ctagcccgtg ttctgaccct ttaggaagtg ctcaagacca tgcactctct
     4081 caagaatctt cagagccagg ctgtagagtc cgctctatca agctgaagga agatattctg
     4141 tcctgcactt ttgctgagtt gagtttaggc ttatgccagt ttattcaaga agtgcggaga
     4201 ccaaatggtg aaaagtatga tccagacagt atcttatact tgtgc
//
LOCUS       XM_032646700            6134 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger MYM-type containing 4
            (ZMYM4), transcript variant X7, mRNA.
ACCESSION   XM_032646700
VERSION     XM_032646700.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6134
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6134
                     /gene="ZMYM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761003"
     CDS             179..3853
                     /gene="ZMYM4"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 4 isoform X5"
                     /protein_id="XP_032502591.1"
                     /db_xref="GeneID:116761003"
                     /translation="MNKMLPSVPATAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTL
                     CLTGYTVPPARPPPPPTKKTCSSCSKDILNPKDVISAQFENTTTSKDFCSQSCLSTYE
                     LKRKPVVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMN
                     CCENCGGYCYSGSGQCHMLQIEGQAKKFCSSTCVTAYKQKSAKITPCALCKSLRSSAE
                     MIENTSSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIR
                     NFCSYSCVVAFQNLFNKPAGMNSSVVPLSQGQVIVSIPTGSTVSAGGGNTSAVSPTSI
                     SSSAAAGLQRLAAQSQHVGFARSVVKLKCQHCNRLFATKPELLDYKGKMFQFCGKNCS
                     DEYKKINNVMAMCEYCKIEKIVKETVRFSGADKSFCSEGCKLLYKHDLAKRWGNHCKM
                     CSYCLQTSPKLVQNNLGGKVEEFCCEECMSKYTVLFYQMAKCDGCKRQGKLSESLKWR
                     GEMKHFCNLLCILMFCNQQSMCDPPSQNNAGSVSMVPAASSGPPSHRKDSTPVIANVV
                     SLASAPAAQPTVNSNSVLQGAVPTVTAKIIGDASTQTDALKLPPSQPPRLLKNKALLC
                     KPITQTKATSCKPHTQNKECQTEDTPTQPQVIVVPVPVPVFVPIPLHLYTQYAPVPFG
                     IPVPMPVPMLIPSSMDNEDKVTENIEDIKEKLPSHPFEADLLEMAEMIAEDEEKEKTL
                     SQGGSQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNTVQE
                     ADLEVKQFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQPRRRGRK
                     KSVVSVEPRSLIQGAFQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGVEHA
                     SSSPCSDPLGSAQDHALSQESSEPGCRVRSIKLKEDILSCTFAELSLGLCQFIQEVRR
                     PNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNG
                     YMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMRRTR
                     TLKYSTKMTYLRFFPPSQKQETEPDKLTVGKRKRSEDDEVPVGVEMAENTDNPLRCPV
                     RLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVR
                     EVHEELAKAKSEDSDVELSD"
     misc_feature    212..325
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    371..493
                     /gene="ZMYM4"
                     /note="metallochaperone-like domain; Region: TRASH;
                     smart00746"
                     /db_xref="CDD:214799"
     misc_feature    647..769
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    1379..1486
                     /gene="ZMYM4"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     Region: zf-FCS; pfam06467"
                     /db_xref="CDD:428958"
     misc_feature    3272..3784
                     /gene="ZMYM4"
                     /note="Domain of unknown function (DUF3504); Region:
                     DUF3504; pfam12012"
                     /db_xref="CDD:463430"
ORIGIN      
        1 tttgagcaga aaactggtgc agtttttgat gaaattgtag agaactgagt atagtcatgg
       61 ccaacagcaa aaaactcaag aaggggaact gaaaattagt gctgtgtttt cagtcagtgg
      121 cagtcctctt gctccacagt tgactactgg ctttcagcct tcactggcat catctggcat
      181 gaataaaatg cttccttcag ttccagccac agctgttcga gtttcctgtt ctggttgtaa
      241 aaaaatcctc cagaaggggc aaactgctta tcagaggaaa gggtctactc agctattctg
      301 ctctacactg tgcctcactg gatatacagt tccacctgcc cgcccaccgc ctcctcccac
      361 taagaaaact tgttcaagtt gctcaaaaga cattttaaat ccaaaggatg tgatcagtgc
      421 ccagtttgaa aataccacca ctagtaaaga tttttgtagt cagtcatgtt tgtcaacata
      481 tgaactgaaa agaaaacctg ttgttaccat aaatacgaat agcatttcaa ccaaatgcag
      541 catgtgtcag aagaatgctg ttattcgaca tgaagttaat taccagaatg tggtacataa
      601 actttgcagt gatgcctgct tttctaagtt tcgctctgct aacaacctca ccatgaactg
      661 ttgtgaaaac tgtgggggtt actgctacag tggctctgga caatgccaca tgctccagat
      721 agagggacag gctaagaagt tttgtagttc cacgtgtgtc acagcatata agcagaaatc
      781 agccaaaatt acaccatgtg cgctttgcaa atcattgaga tcctcagcag aaatgattga
      841 aaataccagt agcttgggaa agacagagct tttctgttct gttaattgct tatctgctta
      901 cagagttaaa atggttactt ctgcaggtgt acaagttcag tgtaacagtt gcaaaacctc
      961 agcaatccct cagtatcacc tagccatgtc agatggaagt attcgcaact tctgcagcta
     1021 cagttgtgtg gtagctttcc agaatttgtt caacaaacca gcaggaatga actcttcagt
     1081 ggtgcccttg tctcagggcc aagtaattgt aagcatccct acaggttcaa cagtgtcagc
     1141 aggaggcggt aacacctctg ctgtttctcc cacctccatc agtagctctg ctgcagctgg
     1201 tctccagcgt cttgctgccc aatcccaaca cgttgggttt gcacgaagtg ttgtaaaact
     1261 caagtgtcag cactgtaacc gtctctttgc cacaaaacca gaacttcttg attataaggg
     1321 taaaatgttt cagttctgtg gcaaaaattg ttctgatgaa tataagaaaa taaataatgt
     1381 aatggcaatg tgtgaatatt gtaaaattga gaaaattgta aaggagactg tgcgattctc
     1441 aggtgctgac aagtcattct gtagtgaagg ttgcaaattg ctttataaac atgacttggc
     1501 aaaacgctgg ggaaatcact gtaaaatgtg cagttattgt ttacagacat ctcccaaatt
     1561 ggtacagaat aatttagggg ggaaagtaga agagttttgt tgtgaagagt gcatgtccaa
     1621 atatacagtt ctgttctatc agatggccaa atgtgatggt tgtaagcgac agggtaagct
     1681 cagtgagtcc ttgaaatggc ggggagaaat gaaacatttc tgtaacctgc tttgtatctt
     1741 gatgttctgt aatcagcaaa gtatgtgtga tccaccttca caaaataatg caggaagtgt
     1801 ttccatggtg ccagctgctt catcagggcc cccatctcac agaaaagatt caactccagt
     1861 tatagctaat gtagtatcat tagcaagtgc tcctgctgct cagcccacag tgaattctaa
     1921 cagtgtctta caaggtgcag ttccaacagt aacagcgaaa atcattgggg atgcaagtac
     1981 acaaacagat gccctcaaac tgccaccttc ccagcctcca agacttttga agaataaagc
     2041 tttattgtgc aaacccatca cacagaccaa ggccacttct tgcaaaccac atacccaaaa
     2101 caaagaatgc cagacagaag acactccaac tcagccccaa gttatcgtgg tgccagttcc
     2161 agtaccagtg ttcgtaccta tacctcttca tctttatact cagtatgccc cagtcccatt
     2221 tggaattcca gttccaatgc ctgtccctat gcttattcca tcctcaatgg ataatgaaga
     2281 taaagtcact gagaatattg aagacattaa ggaaaaactt ccctcacatc cttttgaagc
     2341 tgatctcctt gagatggcag aaatgattgc agaagatgaa gagaaggaga agactctatc
     2401 tcagggagga tcccaaactt ctgaacagga gctctttcta gacaccaaga tatttgaaaa
     2461 agaccaagga agtacttaca gtggtgacct tgaatcagag gcagtatcta ctccacatag
     2521 ctgggaggaa gaattaaatc attatgcctt aaagtcaaat actgtgcaag aggctgattt
     2581 agaagtgaag cagttctcaa aaggggaaac tgaacaggat ctggaagcag attttccatc
     2641 agaatccttt gacccactga ataaaggaca gggaatccag gcacgttccc gaacaagaag
     2701 acgacacaga gatggcttcc cccagcccag acgaagagga cggaagaagt ctgtagtgtc
     2761 tgtggagccc aggagtctta ttcaaggagc ctttcaaggg tgctcagtgt ctgggatgac
     2821 actgaaatac atgtatgggg taaatgcctg gaagaactgg gttcagtgga aaaatgccaa
     2881 ggaagagcag ggggatctga aatgtggagt tgaacatgcc tcatctagcc cgtgttctga
     2941 ccctttagga agtgctcaag accatgcact ctctcaagaa tcttcagagc caggctgtag
     3001 agtccgctct atcaagctga aggaagatat tctgtcctgc acttttgctg agttgagttt
     3061 aggcttatgc cagtttattc aagaagtgcg gagaccaaat ggtgaaaagt atgatccaga
     3121 cagtatctta tacttgtgcc ttggaattca gcagtacctg tttgaaaatg gtagaataga
     3181 taacattttt actgagccct attccagatt tatgattgaa cttaccaaac tcttgaaaat
     3241 atgggaacct acaatacttc ctaatggtta catgttctct cgcattgaag aagagcattt
     3301 gtgggagtgc aaacagctgg gcgcttactc accaatcgtc ctcttgaaca ccctcctttt
     3361 cttcaatacc aaatactttc aactaaagaa tgttactgag cacttgaagc tttcctttgc
     3421 ccatgtgatg agacggacca ggactctgaa gtacagtacc aagatgacat atctgaggtt
     3481 cttcccacct tcacaaaagc aggagacaga accagataaa ctaactgttg gcaagaggaa
     3541 acgaagcgaa gatgatgagg ttccagtggg tgtggagatg gcagaaaata ctgacaaccc
     3601 actaagatgc ccagtccgac tttatgagtt ttacctgtcc aaatgttctg aaagtgtgaa
     3661 gcagaggaat gatgtgtttt accttcaacc tgagcgctcc tgtgttccaa atagccccat
     3721 gtggtactcc acgtttccaa tagaccctgg gaccctggac accatgttaa cacgtattct
     3781 catggtgagg gaggtacatg aagaactcgc caaagccaaa tcagaagact ctgatgttga
     3841 attatcagat taaagtggaa gtggggtccc tattttcata cacgttggta tgcaccaaac
     3901 tgtgaatgca tccagctttg gaaaacgatc tatgagtcca agtcctcttg acttgattat
     3961 aagataatgg aaaacagacg actcgtgaac cacagtgtgg atgtacaaat gaaaattgaa
     4021 ggaaagaata tgaactgaga aatgttgttc tttggcagtg atatagttct tagacatctt
     4081 cagaatgact aaccaacttc tctgagtggt gcataatctt attttgtttg ggaataacaa
     4141 attgtggaat atttttaagg aaaactgttg tataaaactc taccatagta accttagacc
     4201 ttagagaggt agctttggag tgaaaccttg gctgcagtag gctacttggg caagccctat
     4261 gtaaaagtca ggggagaaat cagtacggag ctaagagtgg catcagatga ggactgtggg
     4321 acccagactt gaagacccaa taaaaatatt caactttttt taaaaggtag agagtgaagt
     4381 ggtcttgatt ttgattttca ctgccaagcc aattctgtga aggatagaag cctctggtgc
     4441 ttttgccatg gggtccctca aatcagagga aaaggccttc actgctgttc atgcagtaat
     4501 gtgtcccttt cactttctgg gtctagcctt ctcagctgtg ggtctggatg tgggtaaatt
     4561 aagttcaagg ggccgaaact ctgcaaaatg attatgcaca cagaaaatct gtggagccca
     4621 ttagacccca agtgtcttga aatgtttgca gaaaacccac taaaatgccc acttctctgg
     4681 gtgtcagcct ttattgctgc tgtctcacag catgagctgt ggtacacaga aatgggggtt
     4741 ctccttttgt ttccatttta tccccaaatg gcagcttttc tcccattgtt ttatcttcct
     4801 gtttcccaga tagttcctat cattttgtct tttgcaccag tttctggagg cccttgtcat
     4861 ttcagaaaga gtctctctcc ttactgtggc aagcctgtgg gtgattccac aaagacacag
     4921 tgttacttag ctatcagaat tatggtagaa gaggtcctag tatattcctg tataaagcat
     4981 ttggaagatg agcttgttgc ccaaagaaac ttgaaaatag gattttgggg ttaggataca
     5041 aagacactga ctgtctttca tatccacgag caggtcttct tatagcatta ttccagactc
     5101 tagctgtttt agtagttcta tgaggattgc aagtcctggg tgtgtttggc atatggatcc
     5161 ttcttcttca tctccattct gtttcttccc cacaaaattt tgaatcaaag cgtttatgat
     5221 attggccaat cacggaattt cgttagctga ggttaatttg accctttaat agaaatgaga
     5281 gaagtctaaa aagcctccta gaaactttaa ccttgaaaga ctttacagta tgtcccattt
     5341 ttcagatggg ggtgacaggt tgttttttgg ggtttttttc aataaataaa ctctttaact
     5401 acaataaaaa ttttaaagta ggccttttga cattgtgtac ttacggttct gtccctctgc
     5461 ctgtaacaaa ttttgttttt gttaccaaga actatgtgaa agaagtaaat ctgccccagt
     5521 tctgtatgat taattccatc tgtgtttgtc atttctgact ggaaaacttc ttacttccag
     5581 accttgtttg atatggagga aaaacagttg gattgtctga taagtctgcc aataaactat
     5641 ccagaaacat caggtgtaat agtccccact atacaaattt tatggtttat ataaacacta
     5701 atatttcccc ttctgtagaa aaacaaatat atggcatagt agataaacta ttgtaaaaca
     5761 ctagagagaa aaagaaaatc tgtatctttt aattgagaac agccaatatc caggtaaatg
     5821 gctgtaccag gatgtcaact gcatgttagt ccatacagtt gtccagatcc tgaattaatt
     5881 cgtaaaagga aatattaatt attggtcatt cctcataagc atagccattg atatgtatgt
     5941 ctggttattt gctttttaaa attttattaa aattatgtta aattacattt tcccccccca
     6001 ggggagaaaa attttatcaa atatgagaaa acattaaatt atccattctg ttcttttttg
     6061 ttttttaaac acttgggttt tcaccttgca ggaaccacag aaatattccc gtagaataaa
     6121 acagtatatt tgta
//
LOCUS       XR_004351911             457 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761031
            (LOC116761031), ncRNA.
ACCESSION   XR_004351911
VERSION     XR_004351911.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..457
                     /gene="LOC116761031"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 50% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761031"
     ncRNA           1..457
                     /ncRNA_class="lncRNA"
                     /gene="LOC116761031"
                     /product="uncharacterized LOC116761031"
                     /db_xref="GeneID:116761031"
ORIGIN      
        1 gaaaactcca gaaaaaatat cagtattcat gggcatactt tcatggtttc cagtcagctc
       61 tctttctcac tgtctgtgac agttatttca aacttctgat acattcctta agcctcaact
      121 atcatcagta tgaattgaag aaacaagatt gtcctttgaa ctaaaatcct gttcatcctc
      181 attgtcacta ccaacgactg gaattcctgc aagatcccca gagttcaaaa aataatcatc
      241 ttcatccagc aatgaatttt cagatcctgt ttgattcggc attccataag acatgctgtc
      301 aagggtagga gttaagttgt ggtctatatc ttcagacatt tctgtatcca tgataccacc
      361 accttaaaaa gtaaaatact gtttagacaa atgatagtgc taaagatgac catatttata
      421 aggtctgtct ggcatttaac caaatatata ttttttc
//
LOCUS       XM_032646720            4775 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 9 member A1
            (SLC9A1), mRNA.
ACCESSION   XM_032646720
VERSION     XM_032646720.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4775
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4775
                     /gene="SLC9A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 13 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761037"
     CDS             801..3251
                     /gene="SLC9A1"
                     /codon_start=1
                     /product="sodium/hydrogen exchanger 1"
                     /protein_id="XP_032502611.1"
                     /db_xref="GeneID:116761037"
                     /translation="MLLWSGVCGLSPPRIFPSLLVAVALVGLLPVLRSHGLQPSPTAS
                     TIRGSEPPRERSIGEVTTAPPELAPESRPVNHSFTEHSLKSRKVFPVLGIDYTHVRTP
                     FEISLWILLACLMKIGFHVIPTISSIVPESCLLIVVGLLVGGLIKGVGETPPFLQSDV
                     FFLFLLPPIILDAGYFLPLRQFTENLGTILIFAVVGTLWNAFFLGGLMYAVCLVGGEQ
                     INNIGLLENLLFGSIISAVDPVAVLAVFEEIHINELLHILVFGESLLNDAVTVVLYHL
                     FEEFANYDRVGIVDIVLGFLSFFVVSLGGVFVGVVYGVIAAFTSRFTSHIRVIEPLFV
                     FLYSYMAYLSAELFHLSGIMALIASGVVMRPYVEANISHKSHTTIKYFLKMWSSVSET
                     LIFIFLGVSTVAGSHHWNWTFVISTLLFCLIARVLGVLGLTWFINKFRIVKLTPKDQF
                     IIAYGGLRGAIAFSLGYLLDKKHFPMCDLFLTAIITVIFFTVFVQGMTIRPLVDLLAV
                     KKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYVKKCLIAGE
                     RSKEPQLIAFYHKMEMKQAIELVESGGMGKIPSAVSTVSMQNIHPKSLPAERILPALS
                     KDKEEEIRKILRNNLQKTRQRLRSYNRHTLVADPYEEAWNQMLLQRQKARQLEQKINN
                     YLTVPAHKLDSPTMSRARIGSDPLAYEPKADLPVITIDPASPQSPESVDLVNEELKGK
                     VLGLSRDPGRVAKEDHEDDDRGIMMRTKELSSPGTDDVFTPAPSDSPSSQRMQRCLSD
                     PGPHPEPGEGEPFIPKGQ"
     misc_feature    1083..2780
                     /gene="SLC9A1"
                     /note="sodium/hydrogen exchanger 3; Region: b_cpa1;
                     TIGR00840"
                     /db_xref="CDD:273294"
ORIGIN      
        1 cagagaggca gtagtccgct gccgccgggg ttggggctgg ggctgcaact ggaggtggag
       61 ctggacgcgg aggacctgaa gctgggccag ggcgcagcgc agcaccgcgc cggggccgca
      121 aggaggggcg tttcgttgct ggcccaccgc gagccgccct cagcgccctc caaggcgccc
      181 tctcgccagg ccgcctgcct ccgccttccg cctccctcca tttccccgga atctcagccc
      241 ggcgcgcctg cacccggtcc ttctttgggt ggggaaactc cctgccgctt tctggcttca
      301 cttcctcgca gcctgggctc tcagccccct ctcttcttct cctggactgg gtctcacccc
      361 cttcgatccc cttcctttag ctcaggctcc ctgcccctta ccttagccga gtcccagctc
      421 atcagtcact ttccgcagcc gagggtcccc accctccctt ttccttttcc ttgcctggga
      481 tccaacccat cctgtccttt cctctgtccc tagggtgcag tctctcccct cccccacccc
      541 ctttcccagg cctggagttc cagacctttt ggtcttctct tacggtccta actgagtcct
      601 tgtccctctt ccccagtttg gagttctaga tcgtgaaccc agccttcctc cacttccaga
      661 ggactgcttc cacaaaaaca catctctaaa acatgaactt tgcttagaga cccccagtct
      721 ctcttccccg ctgctgaccc cctgccacct gtgtcccagg tcttactctc actctgctaa
      781 gggtcgaggg tggcagcagg atgcttctct ggtctggtgt ctgtggcctc tctccgcctc
      841 gaatcttccc ttcgctgctc gtggcagtag ccttggtggg gctgctaccc gttcttagaa
      901 gccatggcct ccagcccagc cctactgcca gcaccatcag aggctcagag ccgccacggg
      961 aacgctccat tggggaggtc accaccgccc cgccggagct cgcccccgag agccgccctg
     1021 ttaaccattc cttcactgaa cacagcctga aatctcgaaa ggtctttcca gtcctgggca
     1081 tcgactacac acacgtgcgc acacccttcg aaatctccct ctggatcctg ctggcctgcc
     1141 ttatgaagat aggtttccat gtgatcccca ccatctcgag cattgtcccg gagagctgcc
     1201 tgctgatcgt ggtggggctg ctggtggggg gcctgatcaa gggcgtgggc gagacgcccc
     1261 ccttcctgca gtcagacgtc ttcttcctct tcctgctgcc gcctatcatc ctggatgcgg
     1321 gctacttcct gccgctgcgg cagttcacag agaacctggg caccatcctg atcttcgctg
     1381 tggtgggcac gctgtggaat gccttcttcc tgggcggcct catgtacgcc gtgtgcctgg
     1441 tgggcggcga gcaaatcaac aacatcggcc tcctggaaaa cctgctcttc ggcagcatca
     1501 tttcagccgt ggaccccgtg gccgtgctgg ccgtcttcga ggaaattcac atcaatgagc
     1561 tgctgcacat ccttgtcttc ggggagtccc tgctcaatga cgccgtcact gtggtcctgt
     1621 atcacctctt tgaggagttt gccaactacg accgcgtggg catcgtggac atcgtcctcg
     1681 gcttcctgag cttcttcgtg gtgtccctgg gcggggtgtt tgtgggcgtg gtctacgggg
     1741 tcatcgcagc cttcacctcc cggttcacct cccacatccg cgtcatcgag ccgctcttcg
     1801 tcttcctcta cagctacatg gcctacctgt cagccgagct cttccacctg tcgggcatca
     1861 tggcactcat tgcctcggga gtggtgatgc gcccctatgt ggaggccaac atctcccaca
     1921 agtcccacac gaccatcaag tatttcctga agatgtggag cagcgtcagc gagaccctca
     1981 tcttcatctt cctcggcgtc tccaccgtgg ccggctccca ccactggaac tggacctttg
     2041 tcatcagcac cctgctcttc tgcctcatcg cccgagtgct gggcgtgctg ggcctgacct
     2101 ggttcatcaa caagttccgc atcgtgaagc tgacccccaa ggaccagttc atcattgcct
     2161 acgggggcct gcgaggggcc atcgccttct ccctgggcta cctcctggac aagaagcact
     2221 ttcccatgtg tgacctgttc ctcacagcca tcatcaccgt catcttcttc accgtctttg
     2281 tgcagggcat gaccattcgg cccctggtag accttctggc tgtgaagaaa aagcaagaaa
     2341 cgaagcgctc tatcaacgag gagatccaca ctcagttcct ggaccacctt ctgacaggca
     2401 tcgaggacat ctgtggccac tacggccacc accactggaa ggacaagctc aatcggttta
     2461 ataagaagta tgtgaagaag tgtctgatag ctggcgagcg ctccaaggag ccccagctta
     2521 tcgctttcta ccacaagatg gagatgaagc aggccatcga gctggtggaa agtgggggca
     2581 tgggcaagat cccctctgcc gtctccaccg tctccatgca gaacatccac cccaagtccc
     2641 tgcctgccga gcgcatcctg ccagcactgt ccaaggacaa ggaagaggag atccgcaaaa
     2701 tcctgaggaa taacttgcag aagaccaggc agcggctgcg gtcctacaac agacacacgc
     2761 tggtggcaga cccctacgag gaggcctgga accagatgtt gctccagaga cagaaggccc
     2821 ggcaactgga gcagaagatc aacaactacc tgacggtgcc ggcccacaag ctggactcgc
     2881 ccaccatgtc gcgggcccgc attggctcag acccgctggc ctatgagccg aaggccgact
     2941 tgcctgtgat caccatcgac ccagcctccc cgcagtcgcc cgagtctgtg gacctggtga
     3001 acgaggagct gaagggcaag gtcttggggc tgagccggga tccaggaagg gtggccaagg
     3061 aggaccacga ggacgacgac aggggcatca tgatgcggac caaggagctc tcgtccccag
     3121 gcaccgacga cgtcttcacc cctgcaccaa gtgacagccc cagctcccag aggatgcagc
     3181 gctgcctcag tgacccaggc ccccatcctg agcctgggga gggagagcct ttcatcccca
     3241 agggccagta acactggggc cagcgggcgg tgcccgtccc accacagact ctcccaccag
     3301 agcaggggtc tgctggcggg gctcccctcg tccttcccga cctggattgg ccctgcccct
     3361 ccccctgtcg catggcagct gggcccacag cccccaccgc agcacggctc cccctgcctc
     3421 ctgggaagcg ccctccctcc caccagaact gccttcccag tcctttggca gacctgctgg
     3481 gctgaggcaa accctgccct tcctgatcca agctctctcc catacccaga ccagggcctc
     3541 tgagtttccc agacctcgga gggccccctc ccaatccgtc accctcctca ctgaagtcag
     3601 tcttagtttc taaccaaaga gcctctggct cagccttggt ccctcctgga aagggaagga
     3661 gccggggcct ctgttggcct aggccaggcc ctccattaac agcgttaaga ctaggggacc
     3721 aggcatctga ctgggggagg agggatcagt gacccatggc cgtcccaccc tcctcctgcc
     3781 agctgtgtca ccctggccag ccacctgacc tgtccttact cagagctgca ggctgagggc
     3841 atctctgagc tctgtctgga gctgaggcgc tttggacgat gatatgactc agctctccaa
     3901 actgtgctcc agcggggacc actgggccct tcaggggctt ctgtcagggg caccagaaag
     3961 tgctaccttt ttatctgttt tgtttgttca cacttccatg taagattcta tttgcacaga
     4021 gggcattcct gtttttaaaa catttttgaa aacctctagc tgaacagagc tccggccatc
     4081 ctactctgta gcattaccca tcctcgtttg tgcctgtctg cccaacactc tcccccagaa
     4141 cagtcctctg tccccagggc tctgatttca gaaatgacct cacccgctca catacccacc
     4201 ctaatcatga ttttctctaa ctcacagatg ccgggcctcc tggtaccttc tttctcttgg
     4261 gcctgaccct cagttcccgc tggcctgttt tctctcatcc ctctcccctc ccccattggc
     4321 ccctggaacc tctcttataa gcactgcacc cagcttgctg tggagccccg tcctcagggg
     4381 aggggcctcc cctgagcatc tcccaccagc cagggctggt gggtgggctg agtcctgggt
     4441 ccccagaggc ctttgctcac aggcacacac tcctactccc actgccaccg tgggccaggc
     4501 ccaggcctac tggtgtctgt ccttctccca agggtactcc tttccccagg attgtgcaat
     4561 agtcagagcg tcccccttcc caatggactg ggcagtgggt gctcatccgt cccccctcct
     4621 ctccgtgtaa gtgctgtttg gggcaggagt caccatgcaa gggtgacgtt gacaaccatg
     4681 ttcaaagcca ccccagctgc tgccgctctg ccgtctgtac agaagaaacc gaatcttttt
     4741 catattctaa taaatccgcg tgagtttttg ataga
//
LOCUS       XM_032646732           10154 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centromere protein F (CENPF), transcript
            variant X1, mRNA.
ACCESSION   XM_032646732
VERSION     XM_032646732.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10154
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10154
                     /gene="CENPF"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 82 long SRA reads, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116761043"
     CDS             162..9395
                     /gene="CENPF"
                     /codon_start=1
                     /product="centromere protein F isoform X1"
                     /protein_id="XP_032502623.1"
                     /db_xref="GeneID:116761043"
                     /translation="MSWALEEWKEGLPTRALQKIQELEGQLDKLKKERQQRQFQLETL
                     EAALQKQKQKVENEKAEGANLKRENQSLMEICENLEKTKQKISHELQVKESQVNFQEG
                     QLNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLSPCTTPQKIFATPLTPSQYYS
                     GSKYEDLKEKYNKEVEERKRLEAEVKALQAKKASQATPQSTMNHRDIARHQASSSVFS
                     WQQEKTPSRLSSNALKTPIRRDFSASSFSGEQEVTLSRSTLQIGNRDANSSFCDNSSN
                     SHLLDQFKAQNQELRSKISELELRLQGQEREMKGQVNKLQELQLQVEKAKAELNEKEK
                     VLNKSRDELVRTTAQYDQASTKCIALEQKLKKLTEDLSCQRQNAESARCSLEQKIKEK
                     EKEFQEELSRQQRSFQTLDQEFTQTKAKLTQELQQAKNMHNILQAELDKVTSVKHQLE
                     KKLEEFKEKFSRTEQTLQASQTKENELRRSSEEMKRENSLLKSQSEQRAREFCHLEEE
                     LKKAKQRLSQSQNFAEEMRAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQ
                     RDCSQDLLKKREHHIEQLNEKLSQTERESEALLSALELKKKEYEELKEEKTLFSRWKS
                     ENEQLLNQMESEKESLQSKINHLETCLKTQQIKSHEYNERVRTLEMERENLTVEIRNL
                     HNVIDSKTAEAETQKQAYGELQQKAEFSDQKHEKEIENMCLKISQLTRQVEDLEDKLQ
                     SLSSEIMDKNQRYQDLHAESESLRDLLKSRDSSAVTSESHQRSLLAFEQQSAVNNSFA
                     NIIEEQESVPSERSECHLETDHSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEEL
                     VQIKGEIEENLMKAEQMHQSFVAETSQRISKLQEDTSVHQNVVVETLAALESKERELQ
                     LLNEKLETEQAEIQELKKSNHLLQESLKELQLLSETLSLEKKEMSSIISLDKKDIEEL
                     TQENGTLKEINATLTQEKMNLLQKTESFSNCIDERDKSISELSDQYKQERLTLLQRCE
                     ETGNAFRDLSEKYKAEQEKNSKLECLLNECTSVCEDRKNELGQLKETFAREHQAFVSQ
                     LALAEERNQSLILELETMQQALRSEVTDIQSNSKREADSLKQEIMTLKEEQSKMQQEV
                     NALLQEKEHLMELMKTKHEHQHLELEPIQDSVKVAERKINTRHVQLPMDLEVKDASLD
                     SYNAQLAQGETKVRNMELKLQESEKEEYLQHELQAGGELETGDVQQDIQSRDISGLGN
                     FEIDPEEKYVSVLHELSTSQQDNAHLQCSLQMAMNKLDELEKMCEALQVEKLELISEL
                     NDSRSECVTATSKMAEEVGKLVNEVKILNGENGLLQGEFVKETPESEFGEQQDEQTSV
                     SLNPLDDSNSYEHLTVSNKEVRMHFAELQEKFSSLQSEHKILHDQHCQMSSKMSELQS
                     YIDTLKAENSVLSMSLRNSQGDLVKEVMPGPGEKHFLSLSLSGVTDSPGNAIESSFYK
                     DVLEHMGETSLLNNLDRTVLANQSSVEKVSCSSLEEENLTEREIPSVPLRSVEELETV
                     SQMYLQSFKKLEEKIESQGITKNKEIEELERLLSSSREELDCLRKQYLSEKEQWQQKL
                     TSVTAEMESKLVAEKKHTEHLTLELEVARLQLQGLDLSSRSLLGTDIDDAIRGGDDSC
                     EIRELEDYTSETKERTPKHEIHQICEKDVQQDLSLEMEKITETSAIKLIGEWSREQSP
                     ETSHRTPVEDTTQGCSECISELSLSGPDASVPMDFLENQVTIQTLQLQVKETSNENLR
                     LLHGIKERDQKVESLLNEIKELDSKLNLQEVQLTTKIEACIELEKIVEELKKEKSDFS
                     EKLESFSRDNQRVESSRGLTSNLEMGTDKLSHEGIEDEVAEVADNWRERCLSVENELQ
                     RMKAERGSTEHHALSAEANLEVVQTEKLFLEKDNENKQKVINCLEEELLVVTSERDQL
                     RGELDTLSKENQELDQRSEKMKEKIQELESHQDEYLHLQEQLQSLEKDSQALSLVRSE
                     LENQIRQLNKETESLVRESESLQTKLSELEHEKLTVTEALEAALMEKGEVAVRLSSTQ
                     EEVHQLRKGIEKLRVRIEADEKKQLHISEKLKESERRNDSLQDKVETLERELHMAEEN
                     QELVILDAENSKAEVETLKTQMELMTESLKALDLDLVTIRSEKENLVKQLQEKQGQVS
                     ELHTLLSSLKNVLEEKEREKIQMKEESKAVVEILQTQLKELSEEVAALCDDQETWKAE
                     EQSLDSPVQEVHQLRNNIGKLKVHLDTNERKQLHISEKLKESEHQAALLKDTVENLER
                     ELEVSGKNQEHVILEAEKSKAEVETLKAKIEAMAPNLRALELDLVNTRSEKEDLTKEL
                     QKEQGRVSELETLNSSFENLLQEKEQEKEQMKEESKAVVEILQTQLKELSEKVAALCD
                     DQETWKVEEQSLSSQVDSLEHEKAQLLQGLDEAKSNYMLLQSSVNGLIQEVEDGKQKL
                     EKKDEEIRILKNHIQDQEQLVSKLSQMEGEQQLWEEQRTKLENLMVELEQKTQVLQSK
                     NDTLQDTLEALQNSSKDLEKELQLTKMEKLSFVEKVNTMTVKETELQKEMLAMVQKTT
                     ELKEEFSREKNRLTEDLKLVSEEMKSGKGQLKELILENGELKKSLDCVHKDQMEKQGK
                     MREEIAEYQLRLQEAEKKHQALLLDINKQYEMEIQTYREKLTSKEECLSSQKVEIDLL
                     KSSKEELNNSLKVTTEILEELKKTKMENLKYADKLKKENDRAQGKIKLLIKSCKQLEE
                     EKEMLQKEVSHLEAAQEKQKAGTVVDANVDELMTEMKELKETLEEKTKEADEYLDKYC
                     SLLISHEKLEKAKEMLETQVARLSSQQSKLNLRSSPSLNSVVPGPSPVPSATEKKLSS
                     GQNKASGKRQRSGGIREDGGETTPSTPEKFSKKSRKAVKSGIHPAEDAEDAEPEPEGL
                     PEVVKKGFADIPTGKTSPYILRRTTMVTRTSPRLAAQRLAPSPLSLDKENLAETSKPT
                     AGGSRSQKVKVTQQSPVDSGTALREPTTRSLSISNLPERSSADSPREGLRAKQGRLAP
                     SPEAGPESKGSENCRVQ"
     misc_feature    162..1082
                     /gene="CENPF"
                     /note="Cenp-F N-terminal domain; Region: CENP-F_N;
                     pfam10481"
                     /db_xref="CDD:463106"
     misc_feature    <1023..>1865
                     /gene="CENPF"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    1605..3839
                     /gene="CENPF"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <5448..6611
                     /gene="CENPF"
                     /note="DNA double-strand break repair Rad50 ATPase;
                     Region: PRK02224"
                     /db_xref="CDD:179385"
     misc_feature    6135..8372
                     /gene="CENPF"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    6441..6860
                     /gene="CENPF"
                     /note="Leucine-rich repeats of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_leu_zip; pfam10473"
                     /db_xref="CDD:463102"
     misc_feature    6990..7406
                     /gene="CENPF"
                     /note="Leucine-rich repeats of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_leu_zip; pfam10473"
                     /db_xref="CDD:463102"
     misc_feature    <8127..>8735
                     /gene="CENPF"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    8949..9089
                     /gene="CENPF"
                     /note="Rb-binding domain of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_C_Rb_bdg; pfam10490"
                     /db_xref="CDD:463111"
ORIGIN      
        1 agcgagcgaa tcgaaaacgg gtggcggtcg cgggcagttt gagttggaat ctgtgctcca
       61 gcccgcggcg gctgtactag ggcccgactc tctgagtcgg gtttttcccg actctgccag
      121 caagtttatt tataaatgtt tgaataataa aggagagcaa aatgagctgg gctttggaag
      181 aatggaagga aggcctgcct acaagagctc ttcagaaaat tcaagagctt gaaggacagc
      241 tcgacaaact gaaaaaagaa aggcagcaaa ggcagtttca acttgaaacc ctggaggctg
      301 cgttgcagaa gcaaaaacag aaggttgaga atgaaaaagc tgagggtgca aacctgaaaa
      361 gggagaacca aagcttgatg gaaatatgtg aaaatctgga gaagactaag cagaagattt
      421 ctcatgaact tcaagtcaag gagtcacaag tgaatttcca agaaggacaa ctgaactcaa
      481 gcaaaaagca aatagaaaaa ctggaacagg aacttaaaag gtgtaaatct gaacttgaaa
      541 gaagccaaca agctgcacag tctgcagatg tctctctgag tccatgcact acaccacaaa
      601 aaatttttgc aactccactc acaccaagcc agtattatag cggttccaaa tatgaagatc
      661 taaaagaaaa atataataaa gaagttgaag aacgaaaaag attagaggca gaggtgaaag
      721 ccttgcaggc aaagaaagca agccaggcta ctccccaaag caccatgaat caccgggaca
      781 ttgcccgaca tcaggcttca tcatctgtgt tctcatggca acaagaaaag accccaagtc
      841 gtctttcatc caatgctcta aaaactccaa ttaggagaga tttctctgca tctagttttt
      901 ctggggaaca agaagtgact ctgagtagat caactttgca aatagggaat agagatgcta
      961 atagcagttt ctgtgataat tctagcaatt ctcatctttt ggatcaattc aaagcccaga
     1021 atcaagagct aaggagcaag attagtgagt tggaactacg tctgcaagga caagaaagag
     1081 aaatgaaagg ccaagtgaac aagcttcaag aactccaact ccaagtggag aaagcaaaag
     1141 cggaattaaa cgaaaaagag aaagttttga acaaaagcag ggatgaactg gtgagaacaa
     1201 ctgcacagta tgaccaggca tcaaccaagt gtattgcttt ggagcaaaaa ctgaaaaaat
     1261 tgactgaaga tttgagttgt cagcgtcaaa atgcagagag tgccagatgt tctctggaac
     1321 agaaaatcaa ggaaaaagaa aaagagttcc aagaggagct ctcccgtcaa cagcgttcct
     1381 tccaaaccct ggaccaagag ttcactcaga cgaaagccaa gctcacccag gagctacagc
     1441 aagccaagaa catgcacaac atcctccagg ctgaactgga taaagtcaca tctgtaaagc
     1501 accagctgga aaaaaaattg gaagagttta aggaaaagtt cagtagaact gaacagacct
     1561 tacaggcgag tcagaccaag gaaaatgagc tgaggagaag cagtgaggaa atgaagaggg
     1621 aaaacagcct ccttaagagt cagtctgagc aaagggccag agaattttgc cacctggagg
     1681 aagaactgaa gaaggccaag cagcgtttga gtcagagcca gaactttgca gaagaaatga
     1741 gggctaagaa tacttctcag gaaaccatgt taagagatct tcaagaaaaa atcaatcagc
     1801 aagagaattc cttgacttta gagaaactga agcttgccct ggctgatctg gaaaagcagc
     1861 gagattgttc tcaagacctt ttgaagaaaa gggaacatca cattgaacaa ctgaatgaaa
     1921 agttaagcca aacagagaga gagtccgaag ctttattgag tgctttggaa ttaaagaaga
     1981 aagaatatga agaattgaaa gaagagaaaa ctctgttttc tcgctggaaa agtgaaaatg
     2041 aacaactttt aaatcagatg gaatcagaaa aggaaagctt gcagagtaaa attaatcact
     2101 tggaaacctg tcttaagaca caacaaataa aaagtcacga atacaatgag agggtaagaa
     2161 cactggagat ggaaagagaa aatctgactg tcgagatcag gaaccttcac aatgtgatag
     2221 acagcaagac tgcagaggca gagacacaga agcaagctta tggagaacta caacagaaag
     2281 ccgagttctc agatcagaaa catgagaagg aaatagaaaa tatgtgtttg aaaatttctc
     2341 agcttaccag gcaagttgaa gatctagaag ataagcttca gtcactgtca agtgaaataa
     2401 tggacaaaaa ccagcgttac caagacttgc acgctgaatc tgagagcctc agggatctgc
     2461 taaaatccag agattcctct gcggtgacaa gtgagtctca tcagagaagt cttttggcat
     2521 ttgaacagca gtctgcagtg aataattcct ttgcaaatat aattgaagaa caagaaagcg
     2581 tgccttcaga aaggagcgaa tgccatttag aaacagacca cagtcctaaa agctcatcca
     2641 tgttacaaaa cagagtcgtt tctcttgaat tttcattaga gtctcaaaag cagatgaact
     2701 cagatctgca aaagcagtgt gaagaattgg tgcaaatcaa aggagaaatt gaagaaaatc
     2761 tcatgaaagc agaacagatg catcaaagtt ttgtggctga aacaagtcaa cgaattagta
     2821 agttacaaga agacacttct gttcatcaga atgttgttgt tgaaacttta gctgccttgg
     2881 agagcaagga aagagagttg caacttttga atgaaaagtt agaaactgag caggcagaga
     2941 ttcaagaatt aaaaaagagc aaccatttac ttcaggaatc tctaaaggag ctacaacttt
     3001 tgtctgaaac tctgagcttg gagaaaaagg aaatgagttc catcatttct cttgataaaa
     3061 aggacattga agagctgacc caagagaatg ggactctcaa ggaaattaat gcaaccttaa
     3121 cccaagagaa gatgaacttg ctccagaaaa ctgagagttt ttcaaactgt atagatgaaa
     3181 gagacaaaag catttcagag ttatctgacc agtacaaaca agaaagactt actttgctcc
     3241 aaagatgcga agaaacggga aacgcatttc gggatcttag tgaaaaatat aaagcagagc
     3301 aggaaaagaa ctctaaatta gaatgcttgc tgaatgaatg cacgagtgtt tgtgaagata
     3361 gaaaaaatga attgggacag ctaaaggaaa catttgcaag ggaacaccaa gcatttgtat
     3421 cacaattagc attagctgaa gaaagaaacc agagtttaat actagagttg gagacaatgc
     3481 agcaagccct gagatctgag gttacagata tccaaagcaa ttccaagagg gaggctgaca
     3541 gcttaaagca agaaatcatg actttaaagg aagaacaaag taagatgcaa caggaagtta
     3601 atgccttatt acaagagaag gagcacctga tggaattaat gaagacgaaa catgagcatc
     3661 agcatctaga attggaacca attcaagact ctgtgaaagt agcagagagg aagataaata
     3721 cacgtcacgt tcaacttccg atggaccttg aagttaaaga tgcttctcta gacagttata
     3781 acgcgcaact ggcacaagga gaaactaaag tgagaaacat ggaattaaaa cttcaggaga
     3841 gtgagaagga ggagtaccta cagcacgaat tacaagctgg aggagaatta gaaactggag
     3901 atgtgcaaca agacattcag tcacgagata ttagtggcct tggaaacttt gaaatagatc
     3961 cagaggaaaa atacgtttcg gtgcttcacg agttatcaac aagtcagcag gacaatgccc
     4021 acctgcagtg ctctctacag atggcaatga acaagctgga cgagttagag aagatgtgtg
     4081 aggcattgca ggtggaaaag cttgaactca tatctgagct gaacgactca agatcagaat
     4141 gtgtcacagc aactagcaaa atggcagaag aggtagggaa actagtaaat gaggttaaaa
     4201 tattaaatgg cgaaaatgga cttctccaag gtgagttcgt gaaagaaacg ccagaaagtg
     4261 aatttggtga acagcaagat gagcagacgt ctgtgtcctt aaatcctttg gatgacagta
     4321 attcctatga gcacttgaca gtgtcaaaca aagaagttcg catgcacttt gctgaattac
     4381 aggagaaatt ctcatcttta cagagtgaac acaaaatttt acacgatcag cactgccaga
     4441 tgagctctaa gatgtcagag ctacagtcct acattgacac gttaaaggct gaaaattcag
     4501 tcttgtccat gagtctgaga aactctcaag gtgacttggt aaaggaggtg atgccaggac
     4561 ccggggagaa gcattttctg tccttgtcac tctctggtgt gactgacagc cctggtaatg
     4621 caatagaatc ctctttttac aaagatgttt tagagcatat gggagaaaca tcccttttga
     4681 ataatttaga caggactgtt ttggcaaacc agtccagtgt agagaaggtc tcttgcagta
     4741 gtctggagga ggagaatctg actgagagag aaatcccctc tgtcccgctg aggagcgttg
     4801 aagaacttga gaccgtctct cagatgtacc tgcagtcctt caagaagcta gaagagaaaa
     4861 ttgaaagtca agggattacg aaaaataagg aaatcgaaga actcgaacgg ttactaagtt
     4921 cttcaaggga agagcttgac tgtctcagga agcagtattt gtcagaaaag gagcagtggc
     4981 agcagaagct gacaagtgtg acagcagaga tggagtccaa gttggtggca gaaaagaaac
     5041 acacggaaca ccttactctt gagctcgaag tagcgcgact ccagcttcaa ggtctggact
     5101 taagctctcg gtctctgctt ggcaccgaca tagacgatgc tattcggggt ggagacgata
     5161 gctgtgaaat aagagaattg gaagactata cttcagaaac taaagagagg acaccaaagc
     5221 atgagattca tcagatttgt gaaaaagatg ttcagcagga cctcagtcta gagatggaga
     5281 aaataactga gaccagtgca atcaaactta taggagagtg gtccagggag cagtccccag
     5341 aaaccagtca taggacccca gtggaagaca caacccaggg ctgttcagaa tgcatttctg
     5401 aattgtcact ttctggtcct gatgcttcgg tacctatgga ttttctggag aatcaggtaa
     5461 ccattcagac tctccaactg caggtaaaag agacatcaaa tgagaatttg agattacttc
     5521 atggcataaa ggaacgtgac caaaaagttg aaagcttgct aaacgaaatc aaagagttag
     5581 actcaaaact caatttacag gaagtacaac taactaccaa gattgaagca tgtatagaat
     5641 tggaaaaaat tgttgaggaa cttaagaaag aaaagtcaga tttcagtgaa aaattggaat
     5701 ccttttctcg tgataaccag agagtagaaa gttcgagagg cctcacttct aacttagaaa
     5761 tgggcacaga taaattgtca catgaaggta ttgaagatga ggtagccgag gtggctgaca
     5821 actggagaga gagatgtctc agtgtggaaa atgagctgca gaggatgaaa gctgagagag
     5881 gaagcacaga gcatcacgcc ctctctgcgg aagccaactt agaggtagtt caaacagaga
     5941 agctgttttt agaaaaagac aatgaaaata agcagaaagt tataaactgt cttgaggaag
     6001 aactcttggt ggtcacaagt gagagagacc agcttcgtgg agaattagat actttgtcaa
     6061 aagaaaatca agagctggat cagaggtctg aaaagatgaa ggagaaaata caagagctcg
     6121 aatctcatca agatgagtat ctacatctcc aagagcagct gcagagtttg gaaaaggact
     6181 ctcaggcact gtctttggta agaagtgagc tggaaaacca aatcagacaa ctgaataaag
     6241 agacagaatc actcgtaagg gaatccgaga gcctgcagac caaactgagt gaattggaac
     6301 atgaaaagct gaccgtcacc gaggccttgg aggctgcact gatggagaaa ggcgaggtcg
     6361 cggtgaggct gagctcaacg caggaggaag tgcaccagct gagaaaaggc attgagaaac
     6421 ttagggtccg cattgaggcc gatgaaaaga agcagctcca catctcagag aaactgaaag
     6481 aaagcgagcg taggaacgac tcgcttcagg ataaagttga gacccttgaa agggaattgc
     6541 atatggcaga agaaaaccaa gagctggtga ttcttgatgc tgagaattcc aaagcagagg
     6601 tggagaccct aaaaacacaa atggaattga tgactgaaag cctgaaagct ttagatttag
     6661 accttgtcac catacggtcc gaaaaagaaa atctggtgaa acaactacaa gaaaaacaag
     6721 gtcaggtgtc tgaattacac acgttactct cttcattgaa aaatgtatta gaagaaaagg
     6781 agcgagagaa aatacagatg aaagaagaat ctaaagctgt ggtggagata ctgcaaacac
     6841 aattgaaaga gctaagtgag gaagtagcag ccttgtgtga tgaccaggag acctggaagg
     6901 cggaagaaca gagtctggac tccccagtgc aggaagtaca tcagctgaga aataacattg
     6961 gaaagctgaa agtccaccta gatactaatg aaaggaagca gctccatatc tcagaaaaac
     7021 tgaaggaaag tgagcatcag gcagctttgc ttaaggatac agttgagaac cttgaaagag
     7081 aactagaggt atcaggaaaa aaccaagagc atgtgattct tgaggctgag aagtccaaag
     7141 cagaggtaga gaccctgaaa gcaaaaatag aggcgatggc cccaaatctg agagctttgg
     7201 agttagatct tgtcaataca aggtcagaaa aagaagatct gacaaaagaa ttacaaaaag
     7261 agcaaggtcg agtgtctgaa ttagaaacat taaactcttc atttgaaaat ctattgcaag
     7321 aaaaagagca agaaaaagaa cagatgaaag aagaatctaa agctgtggtg gagatactgc
     7381 agacacaatt gaaagagcta agtgagaaag tagcagcctt gtgtgatgac caggagacct
     7441 ggaaggtaga agaacagagc ctgagtagtc aggtagattc ccttgaacat gagaaggctc
     7501 aactgctaca gggccttgac gaagccaaaa gtaattacat gcttttgcag tcttctgtga
     7561 atggcctcat tcaggaagta gaagatggca aacagaaact agagaaaaag gatgaagaaa
     7621 tcaggatact aaaaaatcat attcaagacc aagagcagct ggtctctaaa ctgtcccaga
     7681 tggaaggaga acagcaactt tgggaggagc aaagaacaaa actggaaaat ctgatggtgg
     7741 aattggagca gaagacccag gtgctgcaat ccaaaaatga cactttgcaa gacaccttag
     7801 aagctctgca gaattcttcc aaggatctgg agaaagagct tcaattgaca aaaatggaaa
     7861 aactgtcctt tgttgaaaaa gtaaacacaa tgactgtgaa ggaaactgag ctgcagaagg
     7921 aaatgcttgc gatggtacag aaaacgacag agctgaaaga agaatttagt agggagaaaa
     7981 acaggctaac tgaagattta aaattagtgt cggaagaaat gaagagcgga aaaggtcagc
     8041 tgaaggagct cattctagaa aacggtgaac tgaagaagag tttggattgt gtacacaaag
     8101 accagatgga aaagcaaggg aagatgagag aagaaatagc tgaatatcag ctacggcttc
     8161 aggaagctga aaagaaacac caggctttgc ttctggatat aaacaaacag tatgaaatgg
     8221 aaatccagac atatcgagag aaattaactt ctaaggaaga atgtctcagc tcccagaagg
     8281 tggagataga cctcttaaag tccagtaaag aagaactcaa taattctctg aaagtgacca
     8341 ctgagatttt agaagaattg aagaaaacca agatggaaaa tctaaaatat gcagataagt
     8401 tgaagaagga aaacgatcgt gcccagggga aaataaagtt gttgatcaaa tcctgtaaac
     8461 agctggaaga agaaaaggag atgttgcaga aagaggtatc tcatcttgaa gctgcgcaag
     8521 agaaacagaa agcaggtact gttgtggatg ctaatgttga tgaattaatg accgagatga
     8581 aagaactgaa agaaaccctt gaagaaaaaa ccaaggaggc agacgaatac ctggataaat
     8641 actgttccct gcttataagc catgagaaat tagagaaagc caaagagatg ttagaaacac
     8701 aggttgcccg tctgagttca caacaatcta aacttaatct tcgaagttct ccttcgctga
     8761 attcagttgt tccaggacca tccccagtcc cttctgctac tgaaaagaag ttatcatctg
     8821 gccaaaataa agcttcaggc aagaggcaaa ggtccggtgg gattcgggag gatgggggag
     8881 aaaccacacc ttctacacca gagaaatttt ctaaaaaaag caggaaagca gtcaaaagtg
     8941 gtattcatcc tgcagaggat gcagaagacg ctgagcctga gccagaggga cttccagaag
     9001 ttgtaaagaa agggtttgcc gacatcccaa caggaaagac tagcccatac atcctgcgga
     9061 gaacaaccat ggtgacaagg accagccccc gccttgctgc acagaggtta gcaccatccc
     9121 ccctaagtct cgacaaagaa aatctcgctg agacctccaa accaacagct ggtggcagca
     9181 gatcacaaaa ggtcaaggtt actcaacaga gcccagtgga ttcaggcact gccctccgag
     9241 aacccaccac cagatctctc tccatcagta accttcctga gagaagttcg gctgacagcc
     9301 ccagggaggg cctgagggcc aagcaaggcc ggctggctcc cagcccagaa gctggccccg
     9361 agtccaaggg cagtgagaac tgtagggtcc agtagaagag cccttgtgtg tcagcacccc
     9421 tggaaggtgg ctgtagttga gtagaaggca gtgtgtctgt ggggtttttc tttattaagg
     9481 gagcacatta tcagagggaa gaaaactatt ccttataaat ctaaatatgt tggactcttt
     9541 agatcgcccc tgtataacag ttagaaaagt ttggaagcac tgattacctc ttcattgata
     9601 ttcctcttct gtaatgtata atagtcctgt ataaagcttt ctggtaatgt taacacaaat
     9661 ggcaagcact atataacaac tcctgttttt atacggactt ttacactaaa aaattgcaac
     9721 acatttttta cttgcaacaa acagctccca ggaaaatgta aacttgcttt atggtatttc
     9781 cttggtatag tgttaagcat aaaataattt tagatcaaga atttctttga gttgagtaaa
     9841 acaaaagaaa acaatgttat atgtgttcaa gggaaacatg cgcacaaata catatgtggg
     9901 tgtgtccctc ctcttccaat gtgttttcta aatcttggct tatataacct gtacatattt
     9961 gtgtgtgggg tagtgggagt tgtgtgttga tttccaatta gcctggttgc agactcctca
    10021 gaggtgtagc atatcaagtt ttctgtcatt gtgctgtttc tgttgaagac caatttgttg
    10081 tagtattttg gtatgcattc tgataaatgg tggtcttcta ttaaaatatg gcatcttttc
    10141 tattaaaaaa ttca
//
LOCUS       XM_032646738           13097 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centromere protein F (CENPF), transcript
            variant X2, mRNA.
ACCESSION   XM_032646738
VERSION     XM_032646738.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13097
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..13097
                     /gene="CENPF"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 67 long SRA reads, 5
                     Proteins, and 77% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116761043"
     CDS             3105..12338
                     /gene="CENPF"
                     /codon_start=1
                     /product="centromere protein F isoform X1"
                     /protein_id="XP_032502629.1"
                     /db_xref="GeneID:116761043"
                     /translation="MSWALEEWKEGLPTRALQKIQELEGQLDKLKKERQQRQFQLETL
                     EAALQKQKQKVENEKAEGANLKRENQSLMEICENLEKTKQKISHELQVKESQVNFQEG
                     QLNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLSPCTTPQKIFATPLTPSQYYS
                     GSKYEDLKEKYNKEVEERKRLEAEVKALQAKKASQATPQSTMNHRDIARHQASSSVFS
                     WQQEKTPSRLSSNALKTPIRRDFSASSFSGEQEVTLSRSTLQIGNRDANSSFCDNSSN
                     SHLLDQFKAQNQELRSKISELELRLQGQEREMKGQVNKLQELQLQVEKAKAELNEKEK
                     VLNKSRDELVRTTAQYDQASTKCIALEQKLKKLTEDLSCQRQNAESARCSLEQKIKEK
                     EKEFQEELSRQQRSFQTLDQEFTQTKAKLTQELQQAKNMHNILQAELDKVTSVKHQLE
                     KKLEEFKEKFSRTEQTLQASQTKENELRRSSEEMKRENSLLKSQSEQRAREFCHLEEE
                     LKKAKQRLSQSQNFAEEMRAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQ
                     RDCSQDLLKKREHHIEQLNEKLSQTERESEALLSALELKKKEYEELKEEKTLFSRWKS
                     ENEQLLNQMESEKESLQSKINHLETCLKTQQIKSHEYNERVRTLEMERENLTVEIRNL
                     HNVIDSKTAEAETQKQAYGELQQKAEFSDQKHEKEIENMCLKISQLTRQVEDLEDKLQ
                     SLSSEIMDKNQRYQDLHAESESLRDLLKSRDSSAVTSESHQRSLLAFEQQSAVNNSFA
                     NIIEEQESVPSERSECHLETDHSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEEL
                     VQIKGEIEENLMKAEQMHQSFVAETSQRISKLQEDTSVHQNVVVETLAALESKERELQ
                     LLNEKLETEQAEIQELKKSNHLLQESLKELQLLSETLSLEKKEMSSIISLDKKDIEEL
                     TQENGTLKEINATLTQEKMNLLQKTESFSNCIDERDKSISELSDQYKQERLTLLQRCE
                     ETGNAFRDLSEKYKAEQEKNSKLECLLNECTSVCEDRKNELGQLKETFAREHQAFVSQ
                     LALAEERNQSLILELETMQQALRSEVTDIQSNSKREADSLKQEIMTLKEEQSKMQQEV
                     NALLQEKEHLMELMKTKHEHQHLELEPIQDSVKVAERKINTRHVQLPMDLEVKDASLD
                     SYNAQLAQGETKVRNMELKLQESEKEEYLQHELQAGGELETGDVQQDIQSRDISGLGN
                     FEIDPEEKYVSVLHELSTSQQDNAHLQCSLQMAMNKLDELEKMCEALQVEKLELISEL
                     NDSRSECVTATSKMAEEVGKLVNEVKILNGENGLLQGEFVKETPESEFGEQQDEQTSV
                     SLNPLDDSNSYEHLTVSNKEVRMHFAELQEKFSSLQSEHKILHDQHCQMSSKMSELQS
                     YIDTLKAENSVLSMSLRNSQGDLVKEVMPGPGEKHFLSLSLSGVTDSPGNAIESSFYK
                     DVLEHMGETSLLNNLDRTVLANQSSVEKVSCSSLEEENLTEREIPSVPLRSVEELETV
                     SQMYLQSFKKLEEKIESQGITKNKEIEELERLLSSSREELDCLRKQYLSEKEQWQQKL
                     TSVTAEMESKLVAEKKHTEHLTLELEVARLQLQGLDLSSRSLLGTDIDDAIRGGDDSC
                     EIRELEDYTSETKERTPKHEIHQICEKDVQQDLSLEMEKITETSAIKLIGEWSREQSP
                     ETSHRTPVEDTTQGCSECISELSLSGPDASVPMDFLENQVTIQTLQLQVKETSNENLR
                     LLHGIKERDQKVESLLNEIKELDSKLNLQEVQLTTKIEACIELEKIVEELKKEKSDFS
                     EKLESFSRDNQRVESSRGLTSNLEMGTDKLSHEGIEDEVAEVADNWRERCLSVENELQ
                     RMKAERGSTEHHALSAEANLEVVQTEKLFLEKDNENKQKVINCLEEELLVVTSERDQL
                     RGELDTLSKENQELDQRSEKMKEKIQELESHQDEYLHLQEQLQSLEKDSQALSLVRSE
                     LENQIRQLNKETESLVRESESLQTKLSELEHEKLTVTEALEAALMEKGEVAVRLSSTQ
                     EEVHQLRKGIEKLRVRIEADEKKQLHISEKLKESERRNDSLQDKVETLERELHMAEEN
                     QELVILDAENSKAEVETLKTQMELMTESLKALDLDLVTIRSEKENLVKQLQEKQGQVS
                     ELHTLLSSLKNVLEEKEREKIQMKEESKAVVEILQTQLKELSEEVAALCDDQETWKAE
                     EQSLDSPVQEVHQLRNNIGKLKVHLDTNERKQLHISEKLKESEHQAALLKDTVENLER
                     ELEVSGKNQEHVILEAEKSKAEVETLKAKIEAMAPNLRALELDLVNTRSEKEDLTKEL
                     QKEQGRVSELETLNSSFENLLQEKEQEKEQMKEESKAVVEILQTQLKELSEKVAALCD
                     DQETWKVEEQSLSSQVDSLEHEKAQLLQGLDEAKSNYMLLQSSVNGLIQEVEDGKQKL
                     EKKDEEIRILKNHIQDQEQLVSKLSQMEGEQQLWEEQRTKLENLMVELEQKTQVLQSK
                     NDTLQDTLEALQNSSKDLEKELQLTKMEKLSFVEKVNTMTVKETELQKEMLAMVQKTT
                     ELKEEFSREKNRLTEDLKLVSEEMKSGKGQLKELILENGELKKSLDCVHKDQMEKQGK
                     MREEIAEYQLRLQEAEKKHQALLLDINKQYEMEIQTYREKLTSKEECLSSQKVEIDLL
                     KSSKEELNNSLKVTTEILEELKKTKMENLKYADKLKKENDRAQGKIKLLIKSCKQLEE
                     EKEMLQKEVSHLEAAQEKQKAGTVVDANVDELMTEMKELKETLEEKTKEADEYLDKYC
                     SLLISHEKLEKAKEMLETQVARLSSQQSKLNLRSSPSLNSVVPGPSPVPSATEKKLSS
                     GQNKASGKRQRSGGIREDGGETTPSTPEKFSKKSRKAVKSGIHPAEDAEDAEPEPEGL
                     PEVVKKGFADIPTGKTSPYILRRTTMVTRTSPRLAAQRLAPSPLSLDKENLAETSKPT
                     AGGSRSQKVKVTQQSPVDSGTALREPTTRSLSISNLPERSSADSPREGLRAKQGRLAP
                     SPEAGPESKGSENCRVQ"
     misc_feature    3105..4025
                     /gene="CENPF"
                     /note="Cenp-F N-terminal domain; Region: CENP-F_N;
                     pfam10481"
                     /db_xref="CDD:463106"
     misc_feature    <3966..>4808
                     /gene="CENPF"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    4548..6782
                     /gene="CENPF"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <8391..9554
                     /gene="CENPF"
                     /note="DNA double-strand break repair Rad50 ATPase;
                     Region: PRK02224"
                     /db_xref="CDD:179385"
     misc_feature    9078..11315
                     /gene="CENPF"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    9384..9803
                     /gene="CENPF"
                     /note="Leucine-rich repeats of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_leu_zip; pfam10473"
                     /db_xref="CDD:463102"
     misc_feature    9933..10349
                     /gene="CENPF"
                     /note="Leucine-rich repeats of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_leu_zip; pfam10473"
                     /db_xref="CDD:463102"
     misc_feature    <11070..>11678
                     /gene="CENPF"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    11892..12032
                     /gene="CENPF"
                     /note="Rb-binding domain of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_C_Rb_bdg; pfam10490"
                     /db_xref="CDD:463111"
ORIGIN      
        1 tggcggtcgc gggcagtttg agttggaatc tgtgctccag cccgcggcgg ctgtactagg
       61 gcccgactct ctgagtcggg tttttcccga ctctgccagc aaggtgagcg ttctgcttgg
      121 gtcccggctc tggcggcggg agtgagggag ctgttggcct tctgcagggg gttactgggc
      181 ggggatgcct gtggaatcgc cctcctaggc actgaaggtg cagcgggccg ccgcctcttc
      241 ccttctgacg gaactgggga atcggccccg ggccaagttc tttgtggtgt cggcccccct
      301 ctgctcctgg taaaaatggg ctcgcactag tgtccggagg ccctgctcgg tcacgggctt
      361 gccctttgga ggatcaattt cctcctttgt aaggtaaaag acttgggaga tcagcaggta
      421 tttactagca gccttccgcg cctatttgaa atttggacat cggtcctttg ttgcgtggag
      481 gaaatgcaaa ctttagtttt gagggttttg atccaggcag caggttggtg tgcctattgt
      541 tagttgcgag agcatttctc tcacgccttc cacgttcatt tggctgcgcc tgtgttcctg
      601 gctccgctat gggatgagga ctcagaaata aatgactttg agcctggtct agaggagcag
      661 gcagagtttt cattcacagg ctccgcggtg gcactttagg cgggaacttg ggtttcttgg
      721 tggagatggg gaattctgat aaagggaaag cgcaaaacgg gcctgccgtg ccgggggtgg
      781 gcgagtcaca aggtcacaaa agagcttcct cgggcacttt ctggggttga gtgattcggg
      841 catggagagt gtcctcccca cggttaagac agaaacagta ttttctggaa ggaagatagt
      901 cctgcagatc ttttttgcag gaacctcgat atccagggct tttctacatc acccaccccc
      961 gccccccact cccatccctt tgcccctcac atcttttttt tttttttata aatttattta
     1021 ttcatttatt tatttttggc tgtgttgggt cttcgtttct gtgtgagggc tttctctagt
     1081 tgtggcaagc gggggccact cttcatcgcg gtgcgcgggc ctctcactgt cgcggcctct
     1141 cttgctgcgg agcacaggct ccagacgcgc agagctcagt atttatagct cacgggccca
     1201 gctgctccgt ggcacgtggg atcttcccag accagggctt gaacctgtgt cccctgcctt
     1261 ggcaggcaga ctctcaacca ctgcgccacc agggaagccc tgcccctcac atctttgagg
     1321 attgcatttt ttgtcctttt ctcccagtgg ctccatagag attgttgaat ggttaatgcc
     1381 ttaatctgtc aaagtcccct ctaatcagaa ttagcttggg tctggtgatt gctttaacca
     1441 tttatttgtt gctgtgtctt agactttaga aatggaaaag catttaactt gccagtcttc
     1501 cttctgttta tttccatcat ctctatcatc tttttaaatt gctcctttta atattttgtt
     1561 cgctatggtg tatggatgtc atgatttcag tggctggcag aattgttcag gagttgtagt
     1621 tgtgtgcctc tgaggtatga tatacccacc cgtgaacccc tgaatgagca agctagtttg
     1681 gaataggagt agcctattgg ggcagtgaaa attgtccttt gttggtggag cggcatgaga
     1741 ctcctttaag tagtttttgg gtaaatggga atggtttcaa agaactaaaa gggtggggtg
     1801 ggaggtgaga atggcagaga aaacagctct ccaaggcttg atactaaagt atgtgttttc
     1861 tgagaccctt ccttctcttt taatatttgg aaaaagtttt attatactta gtactttcat
     1921 caactattta ttaattgttc tgataaaaaa tgtcattgat aaagtcgact gaaacaaaac
     1981 gctaaaaatg gttgtggact tcatttagta aaaaacggat tctcatcctg ttgctaaagg
     2041 aactggaaaa tgaatgcttt ttctttcatt taagttctaa aggctaatga ataaagaata
     2101 attgccatac ttttctccca gctgatttaa attttctaag atatgtctga gaaagaggta
     2161 ggccatttct atcttggtgc cataggcatc agtatacaaa tgaaaaagcg ttttcagtga
     2221 ctaatacaat cgctaatatg tatggaaagc ttaccaggag atactgttct aaagctttag
     2281 ggaaccacca ccattattat tcgcatttta caaatgagga aaccaaggca cggaggtgtt
     2341 aaataacatg cccaaggtcg tgcatcttgt aggctgctga gcagggattt gaatccctaa
     2401 ggctatatac ctgattcctg gtcagggtct ctctggagaa tgactttact gcattttgca
     2461 gtgattctag tgctagtatg tcattcaccc tttgttcatg catgcattga ctcaacaaat
     2521 gataacctct tgggaggaaa aggaggtacc tgtgccatga gagactctga tggggagata
     2581 tgaccagatt atgatggttg tcctcaggga aggcttcctg gaggaagagg gacagagtat
     2641 gagtgggaat taatgacatg aagagaggaa agaagagcat ttgcaaagta acttatcatg
     2701 cattttattt gtcctgtaag acctatttca ccagaaacct tatagcaaaa tattcatgtc
     2761 ttgtacaatg aaaacaaact gagtggtaga aagcaggtag ccatataaga gtcaaaaatg
     2821 agatacaaga aaaccagaaa gcaaggggaa gccaaacaag catactgtgt actattgaca
     2881 cttcacagtc agttattagt agtcaccttg cagagggtgg agaagatgga tgttatactt
     2941 tgttatcttt tggaacatga agttttgaaa cttgattctt agaggtggtt atgtagatta
     3001 gttagtctct gagactgtaa gtttcttttt actatagtaa gaccaacagg ttgtttattc
     3061 ttttcagttt atttataaat gtttgaataa taaaggagag caaaatgagc tgggctttgg
     3121 aagaatggaa ggaaggcctg cctacaagag ctcttcagaa aattcaagag cttgaaggac
     3181 agctcgacaa actgaaaaaa gaaaggcagc aaaggcagtt tcaacttgaa accctggagg
     3241 ctgcgttgca gaagcaaaaa cagaaggttg agaatgaaaa agctgagggt gcaaacctga
     3301 aaagggagaa ccaaagcttg atggaaatat gtgaaaatct ggagaagact aagcagaaga
     3361 tttctcatga acttcaagtc aaggagtcac aagtgaattt ccaagaagga caactgaact
     3421 caagcaaaaa gcaaatagaa aaactggaac aggaacttaa aaggtgtaaa tctgaacttg
     3481 aaagaagcca acaagctgca cagtctgcag atgtctctct gagtccatgc actacaccac
     3541 aaaaaatttt tgcaactcca ctcacaccaa gccagtatta tagcggttcc aaatatgaag
     3601 atctaaaaga aaaatataat aaagaagttg aagaacgaaa aagattagag gcagaggtga
     3661 aagccttgca ggcaaagaaa gcaagccagg ctactcccca aagcaccatg aatcaccggg
     3721 acattgcccg acatcaggct tcatcatctg tgttctcatg gcaacaagaa aagaccccaa
     3781 gtcgtctttc atccaatgct ctaaaaactc caattaggag agatttctct gcatctagtt
     3841 tttctgggga acaagaagtg actctgagta gatcaacttt gcaaataggg aatagagatg
     3901 ctaatagcag tttctgtgat aattctagca attctcatct tttggatcaa ttcaaagccc
     3961 agaatcaaga gctaaggagc aagattagtg agttggaact acgtctgcaa ggacaagaaa
     4021 gagaaatgaa aggccaagtg aacaagcttc aagaactcca actccaagtg gagaaagcaa
     4081 aagcggaatt aaacgaaaaa gagaaagttt tgaacaaaag cagggatgaa ctggtgagaa
     4141 caactgcaca gtatgaccag gcatcaacca agtgtattgc tttggagcaa aaactgaaaa
     4201 aattgactga agatttgagt tgtcagcgtc aaaatgcaga gagtgccaga tgttctctgg
     4261 aacagaaaat caaggaaaaa gaaaaagagt tccaagagga gctctcccgt caacagcgtt
     4321 ccttccaaac cctggaccaa gagttcactc agacgaaagc caagctcacc caggagctac
     4381 agcaagccaa gaacatgcac aacatcctcc aggctgaact ggataaagtc acatctgtaa
     4441 agcaccagct ggaaaaaaaa ttggaagagt ttaaggaaaa gttcagtaga actgaacaga
     4501 ccttacaggc gagtcagacc aaggaaaatg agctgaggag aagcagtgag gaaatgaaga
     4561 gggaaaacag cctccttaag agtcagtctg agcaaagggc cagagaattt tgccacctgg
     4621 aggaagaact gaagaaggcc aagcagcgtt tgagtcagag ccagaacttt gcagaagaaa
     4681 tgagggctaa gaatacttct caggaaacca tgttaagaga tcttcaagaa aaaatcaatc
     4741 agcaagagaa ttccttgact ttagagaaac tgaagcttgc cctggctgat ctggaaaagc
     4801 agcgagattg ttctcaagac cttttgaaga aaagggaaca tcacattgaa caactgaatg
     4861 aaaagttaag ccaaacagag agagagtccg aagctttatt gagtgctttg gaattaaaga
     4921 agaaagaata tgaagaattg aaagaagaga aaactctgtt ttctcgctgg aaaagtgaaa
     4981 atgaacaact tttaaatcag atggaatcag aaaaggaaag cttgcagagt aaaattaatc
     5041 acttggaaac ctgtcttaag acacaacaaa taaaaagtca cgaatacaat gagagggtaa
     5101 gaacactgga gatggaaaga gaaaatctga ctgtcgagat caggaacctt cacaatgtga
     5161 tagacagcaa gactgcagag gcagagacac agaagcaagc ttatggagaa ctacaacaga
     5221 aagccgagtt ctcagatcag aaacatgaga aggaaataga aaatatgtgt ttgaaaattt
     5281 ctcagcttac caggcaagtt gaagatctag aagataagct tcagtcactg tcaagtgaaa
     5341 taatggacaa aaaccagcgt taccaagact tgcacgctga atctgagagc ctcagggatc
     5401 tgctaaaatc cagagattcc tctgcggtga caagtgagtc tcatcagaga agtcttttgg
     5461 catttgaaca gcagtctgca gtgaataatt cctttgcaaa tataattgaa gaacaagaaa
     5521 gcgtgccttc agaaaggagc gaatgccatt tagaaacaga ccacagtcct aaaagctcat
     5581 ccatgttaca aaacagagtc gtttctcttg aattttcatt agagtctcaa aagcagatga
     5641 actcagatct gcaaaagcag tgtgaagaat tggtgcaaat caaaggagaa attgaagaaa
     5701 atctcatgaa agcagaacag atgcatcaaa gttttgtggc tgaaacaagt caacgaatta
     5761 gtaagttaca agaagacact tctgttcatc agaatgttgt tgttgaaact ttagctgcct
     5821 tggagagcaa ggaaagagag ttgcaacttt tgaatgaaaa gttagaaact gagcaggcag
     5881 agattcaaga attaaaaaag agcaaccatt tacttcagga atctctaaag gagctacaac
     5941 ttttgtctga aactctgagc ttggagaaaa aggaaatgag ttccatcatt tctcttgata
     6001 aaaaggacat tgaagagctg acccaagaga atgggactct caaggaaatt aatgcaacct
     6061 taacccaaga gaagatgaac ttgctccaga aaactgagag tttttcaaac tgtatagatg
     6121 aaagagacaa aagcatttca gagttatctg accagtacaa acaagaaaga cttactttgc
     6181 tccaaagatg cgaagaaacg ggaaacgcat ttcgggatct tagtgaaaaa tataaagcag
     6241 agcaggaaaa gaactctaaa ttagaatgct tgctgaatga atgcacgagt gtttgtgaag
     6301 atagaaaaaa tgaattggga cagctaaagg aaacatttgc aagggaacac caagcatttg
     6361 tatcacaatt agcattagct gaagaaagaa accagagttt aatactagag ttggagacaa
     6421 tgcagcaagc cctgagatct gaggttacag atatccaaag caattccaag agggaggctg
     6481 acagcttaaa gcaagaaatc atgactttaa aggaagaaca aagtaagatg caacaggaag
     6541 ttaatgcctt attacaagag aaggagcacc tgatggaatt aatgaagacg aaacatgagc
     6601 atcagcatct agaattggaa ccaattcaag actctgtgaa agtagcagag aggaagataa
     6661 atacacgtca cgttcaactt ccgatggacc ttgaagttaa agatgcttct ctagacagtt
     6721 ataacgcgca actggcacaa ggagaaacta aagtgagaaa catggaatta aaacttcagg
     6781 agagtgagaa ggaggagtac ctacagcacg aattacaagc tggaggagaa ttagaaactg
     6841 gagatgtgca acaagacatt cagtcacgag atattagtgg ccttggaaac tttgaaatag
     6901 atccagagga aaaatacgtt tcggtgcttc acgagttatc aacaagtcag caggacaatg
     6961 cccacctgca gtgctctcta cagatggcaa tgaacaagct ggacgagtta gagaagatgt
     7021 gtgaggcatt gcaggtggaa aagcttgaac tcatatctga gctgaacgac tcaagatcag
     7081 aatgtgtcac agcaactagc aaaatggcag aagaggtagg gaaactagta aatgaggtta
     7141 aaatattaaa tggcgaaaat ggacttctcc aaggtgagtt cgtgaaagaa acgccagaaa
     7201 gtgaatttgg tgaacagcaa gatgagcaga cgtctgtgtc cttaaatcct ttggatgaca
     7261 gtaattccta tgagcacttg acagtgtcaa acaaagaagt tcgcatgcac tttgctgaat
     7321 tacaggagaa attctcatct ttacagagtg aacacaaaat tttacacgat cagcactgcc
     7381 agatgagctc taagatgtca gagctacagt cctacattga cacgttaaag gctgaaaatt
     7441 cagtcttgtc catgagtctg agaaactctc aaggtgactt ggtaaaggag gtgatgccag
     7501 gacccgggga gaagcatttt ctgtccttgt cactctctgg tgtgactgac agccctggta
     7561 atgcaataga atcctctttt tacaaagatg ttttagagca tatgggagaa acatcccttt
     7621 tgaataattt agacaggact gttttggcaa accagtccag tgtagagaag gtctcttgca
     7681 gtagtctgga ggaggagaat ctgactgaga gagaaatccc ctctgtcccg ctgaggagcg
     7741 ttgaagaact tgagaccgtc tctcagatgt acctgcagtc cttcaagaag ctagaagaga
     7801 aaattgaaag tcaagggatt acgaaaaata aggaaatcga agaactcgaa cggttactaa
     7861 gttcttcaag ggaagagctt gactgtctca ggaagcagta tttgtcagaa aaggagcagt
     7921 ggcagcagaa gctgacaagt gtgacagcag agatggagtc caagttggtg gcagaaaaga
     7981 aacacacgga acaccttact cttgagctcg aagtagcgcg actccagctt caaggtctgg
     8041 acttaagctc tcggtctctg cttggcaccg acatagacga tgctattcgg ggtggagacg
     8101 atagctgtga aataagagaa ttggaagact atacttcaga aactaaagag aggacaccaa
     8161 agcatgagat tcatcagatt tgtgaaaaag atgttcagca ggacctcagt ctagagatgg
     8221 agaaaataac tgagaccagt gcaatcaaac ttataggaga gtggtccagg gagcagtccc
     8281 cagaaaccag tcataggacc ccagtggaag acacaaccca gggctgttca gaatgcattt
     8341 ctgaattgtc actttctggt cctgatgctt cggtacctat ggattttctg gagaatcagg
     8401 taaccattca gactctccaa ctgcaggtaa aagagacatc aaatgagaat ttgagattac
     8461 ttcatggcat aaaggaacgt gaccaaaaag ttgaaagctt gctaaacgaa atcaaagagt
     8521 tagactcaaa actcaattta caggaagtac aactaactac caagattgaa gcatgtatag
     8581 aattggaaaa aattgttgag gaacttaaga aagaaaagtc agatttcagt gaaaaattgg
     8641 aatccttttc tcgtgataac cagagagtag aaagttcgag aggcctcact tctaacttag
     8701 aaatgggcac agataaattg tcacatgaag gtattgaaga tgaggtagcc gaggtggctg
     8761 acaactggag agagagatgt ctcagtgtgg aaaatgagct gcagaggatg aaagctgaga
     8821 gaggaagcac agagcatcac gccctctctg cggaagccaa cttagaggta gttcaaacag
     8881 agaagctgtt tttagaaaaa gacaatgaaa ataagcagaa agttataaac tgtcttgagg
     8941 aagaactctt ggtggtcaca agtgagagag accagcttcg tggagaatta gatactttgt
     9001 caaaagaaaa tcaagagctg gatcagaggt ctgaaaagat gaaggagaaa atacaagagc
     9061 tcgaatctca tcaagatgag tatctacatc tccaagagca gctgcagagt ttggaaaagg
     9121 actctcaggc actgtctttg gtaagaagtg agctggaaaa ccaaatcaga caactgaata
     9181 aagagacaga atcactcgta agggaatccg agagcctgca gaccaaactg agtgaattgg
     9241 aacatgaaaa gctgaccgtc accgaggcct tggaggctgc actgatggag aaaggcgagg
     9301 tcgcggtgag gctgagctca acgcaggagg aagtgcacca gctgagaaaa ggcattgaga
     9361 aacttagggt ccgcattgag gccgatgaaa agaagcagct ccacatctca gagaaactga
     9421 aagaaagcga gcgtaggaac gactcgcttc aggataaagt tgagaccctt gaaagggaat
     9481 tgcatatggc agaagaaaac caagagctgg tgattcttga tgctgagaat tccaaagcag
     9541 aggtggagac cctaaaaaca caaatggaat tgatgactga aagcctgaaa gctttagatt
     9601 tagaccttgt caccatacgg tccgaaaaag aaaatctggt gaaacaacta caagaaaaac
     9661 aaggtcaggt gtctgaatta cacacgttac tctcttcatt gaaaaatgta ttagaagaaa
     9721 aggagcgaga gaaaatacag atgaaagaag aatctaaagc tgtggtggag atactgcaaa
     9781 cacaattgaa agagctaagt gaggaagtag cagccttgtg tgatgaccag gagacctgga
     9841 aggcggaaga acagagtctg gactccccag tgcaggaagt acatcagctg agaaataaca
     9901 ttggaaagct gaaagtccac ctagatacta atgaaaggaa gcagctccat atctcagaaa
     9961 aactgaagga aagtgagcat caggcagctt tgcttaagga tacagttgag aaccttgaaa
    10021 gagaactaga ggtatcagga aaaaaccaag agcatgtgat tcttgaggct gagaagtcca
    10081 aagcagaggt agagaccctg aaagcaaaaa tagaggcgat ggccccaaat ctgagagctt
    10141 tggagttaga tcttgtcaat acaaggtcag aaaaagaaga tctgacaaaa gaattacaaa
    10201 aagagcaagg tcgagtgtct gaattagaaa cattaaactc ttcatttgaa aatctattgc
    10261 aagaaaaaga gcaagaaaaa gaacagatga aagaagaatc taaagctgtg gtggagatac
    10321 tgcagacaca attgaaagag ctaagtgaga aagtagcagc cttgtgtgat gaccaggaga
    10381 cctggaaggt agaagaacag agcctgagta gtcaggtaga ttcccttgaa catgagaagg
    10441 ctcaactgct acagggcctt gacgaagcca aaagtaatta catgcttttg cagtcttctg
    10501 tgaatggcct cattcaggaa gtagaagatg gcaaacagaa actagagaaa aaggatgaag
    10561 aaatcaggat actaaaaaat catattcaag accaagagca gctggtctct aaactgtccc
    10621 agatggaagg agaacagcaa ctttgggagg agcaaagaac aaaactggaa aatctgatgg
    10681 tggaattgga gcagaagacc caggtgctgc aatccaaaaa tgacactttg caagacacct
    10741 tagaagctct gcagaattct tccaaggatc tggagaaaga gcttcaattg acaaaaatgg
    10801 aaaaactgtc ctttgttgaa aaagtaaaca caatgactgt gaaggaaact gagctgcaga
    10861 aggaaatgct tgcgatggta cagaaaacga cagagctgaa agaagaattt agtagggaga
    10921 aaaacaggct aactgaagat ttaaaattag tgtcggaaga aatgaagagc ggaaaaggtc
    10981 agctgaagga gctcattcta gaaaacggtg aactgaagaa gagtttggat tgtgtacaca
    11041 aagaccagat ggaaaagcaa gggaagatga gagaagaaat agctgaatat cagctacggc
    11101 ttcaggaagc tgaaaagaaa caccaggctt tgcttctgga tataaacaaa cagtatgaaa
    11161 tggaaatcca gacatatcga gagaaattaa cttctaagga agaatgtctc agctcccaga
    11221 aggtggagat agacctctta aagtccagta aagaagaact caataattct ctgaaagtga
    11281 ccactgagat tttagaagaa ttgaagaaaa ccaagatgga aaatctaaaa tatgcagata
    11341 agttgaagaa ggaaaacgat cgtgcccagg ggaaaataaa gttgttgatc aaatcctgta
    11401 aacagctgga agaagaaaag gagatgttgc agaaagaggt atctcatctt gaagctgcgc
    11461 aagagaaaca gaaagcaggt actgttgtgg atgctaatgt tgatgaatta atgaccgaga
    11521 tgaaagaact gaaagaaacc cttgaagaaa aaaccaagga ggcagacgaa tacctggata
    11581 aatactgttc cctgcttata agccatgaga aattagagaa agccaaagag atgttagaaa
    11641 cacaggttgc ccgtctgagt tcacaacaat ctaaacttaa tcttcgaagt tctccttcgc
    11701 tgaattcagt tgttccagga ccatccccag tcccttctgc tactgaaaag aagttatcat
    11761 ctggccaaaa taaagcttca ggcaagaggc aaaggtccgg tgggattcgg gaggatgggg
    11821 gagaaaccac accttctaca ccagagaaat tttctaaaaa aagcaggaaa gcagtcaaaa
    11881 gtggtattca tcctgcagag gatgcagaag acgctgagcc tgagccagag ggacttccag
    11941 aagttgtaaa gaaagggttt gccgacatcc caacaggaaa gactagccca tacatcctgc
    12001 ggagaacaac catggtgaca aggaccagcc cccgccttgc tgcacagagg ttagcaccat
    12061 cccccctaag tctcgacaaa gaaaatctcg ctgagacctc caaaccaaca gctggtggca
    12121 gcagatcaca aaaggtcaag gttactcaac agagcccagt ggattcaggc actgccctcc
    12181 gagaacccac caccagatct ctctccatca gtaaccttcc tgagagaagt tcggctgaca
    12241 gccccaggga gggcctgagg gccaagcaag gccggctggc tcccagccca gaagctggcc
    12301 ccgagtccaa gggcagtgag aactgtaggg tccagtagaa gagcccttgt gtgtcagcac
    12361 ccctggaagg tggctgtagt tgagtagaag gcagtgtgtc tgtggggttt ttctttatta
    12421 agggagcaca ttatcagagg gaagaaaact attccttata aatctaaata tgttggactc
    12481 tttagatcgc ccctgtataa cagttagaaa agtttggaag cactgattac ctcttcattg
    12541 atattcctct tctgtaatgt ataatagtcc tgtataaagc tttctggtaa tgttaacaca
    12601 aatggcaagc actatataac aactcctgtt tttatacgga cttttacact aaaaaattgc
    12661 aacacatttt ttacttgcaa caaacagctc ccaggaaaat gtaaacttgc tttatggtat
    12721 ttccttggta tagtgttaag cataaaataa ttttagatca agaatttctt tgagttgagt
    12781 aaaacaaaag aaaacaatgt tatatgtgtt caagggaaac atgcgcacaa atacatatgt
    12841 gggtgtgtcc ctcctcttcc aatgtgtttt ctaaatcttg gcttatataa cctgtacata
    12901 tttgtgtgtg gggtagtggg agttgtgtgt tgatttccaa ttagcctggt tgcagactcc
    12961 tcagaggtgt agcatatcaa gttttctgtc attgtgctgt ttctgttgaa gaccaatttg
    13021 ttgtagtatt ttggtatgca ttctgataaa tggtggtctt ctattaaaat atggcatctt
    13081 ttctattaaa aaattca
//
LOCUS       XM_032646747           10001 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centromere protein F (CENPF), transcript
            variant X3, mRNA.
ACCESSION   XM_032646747
VERSION     XM_032646747.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10001
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10001
                     /gene="CENPF"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 69 long SRA reads, 1
                     Protein, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments, including 1 sample with support for
                     all annotated introns"
                     /db_xref="GeneID:116761043"
     CDS             162..9242
                     /gene="CENPF"
                     /codon_start=1
                     /product="centromere protein F isoform X2"
                     /protein_id="XP_032502638.1"
                     /db_xref="GeneID:116761043"
                     /translation="MSWALEEWKEGLPTRALQKIQELEGQLDKLKKERQQRQFQLETL
                     EAALQKQKQKVENEKAEGANLKRENQSLMEICENLEKTKQKISHELQVKESQVNFQEG
                     QLNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLSPCTTPQKIFATPLTPSQYYS
                     GSKYEDLKEKYNKEVEERKRLEAEVKALQAKKASQATPQSTMNHRDIARHQASSSVFS
                     WQQEKTPSRLSSNALKTPIRRDFSASSFSGEQEVTLSRSTLQIGNRDANSSFCDNSSN
                     SHLLDQFKAQNQELRSKISELELRLQGQEREMKGQVNKLQELQLQVEKAKAELNEKEK
                     VLNKSRDELVRTTAQYDQASTKCIALEQKLKKLTEDLSCQRQNAESARCSLEQKIKEK
                     EKEFQEELSRQQRSFQTLDQEFTQTKAKLTQELQQAKNMHNILQAELDKVTSVKHQLE
                     KKLEEFKEKFSRTEQTLQASQTKENELRRSSEEMKRENSLLKSQSEQRAREFCHLEEE
                     LKKAKQRLSQSQNFAEEMRAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQ
                     RDCSQDLLKKREHHIEQLNEKLSQTERESEALLSALELKKKEYEELKEEKTLFSRWKS
                     ENEQLLNQMESEKESLQSKINHLETCLKTQQIKSHEYNERVRTLEMERENLTVEIRNL
                     HNVIDSKTAEAETQKQAYGELQQKAEFSDQKHEKEIENMCLKISQLTRQVEDLEDKLQ
                     SLSSEIMDKNQRYQDLHAESESLRDLLKSRDSSAVTSESHQRSLLAFEQQSAVNNSFA
                     NIIEEQESVPSERSECHLETDHSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEEL
                     VQIKGEIEENLMKAEQMHQSFVAETSQRISKLQEDTSVHQNVVVETLAALESKERELQ
                     LLNEKLETEQAEIQELKKSNHLLQESLKELQLLSETLSLEKKEMSSIISLDKKDIEEL
                     TQENGTLKEINATLTQEKMNLLQKTESFSNCIDERDKSISELSDQYKQERLTLLQRCE
                     ETGNAFRDLSEKYKAEQEKNSKLECLLNECTSVCEDRKNELGQLKETFAREHQAFVSQ
                     LALAEERNQSLILELETMQQALRSEVTDIQSNSKREADSLKQEIMTLKEEQSKMQQEV
                     NALLQEKEHLMELMKTKHEHQHLELEPIQDSVKVAERKINTRHVQLPMDLEVKDASLD
                     SYNAQLAQGETKVRNMELKLQESEKEEYLQHELQAGGELETGDVQQDIQSRDISGLGN
                     FEIDPEEKYVSVLHELSTSQQDNAHLQCSLQMAMNKLDELEKMCEALQVEKLELISEL
                     NDSRSECVTATSKMAEEVGKLVNEVKILNGENGLLQGEFVKETPESEFGEQQDEQTSV
                     SLNPLDDSNSYEHLTVSNKEVRMHFAELQEKFSSLQSEHKILHDQHCQMSSKMSELQS
                     YIDTLKAENSVLSMSLRNSQGDLVKEVMPGPGEKHFLSLSLSGVTDSPGNAIESSFYK
                     DVLEHMGETSLLNNLDRTVLANQSSVEKVSCSSLEEENLTEREIPSVPLRSVEELETV
                     SQMYLQSFKKLEEKIESQGITKNKEIEELERLLSSSREELDCLRKQYLSEKEQWQQKL
                     TSVTAEMESKLVAEKKHTEHLTLELEVARLQLQGLDLSSRSLLGTDIDDAIRGGDDSC
                     EIRELEDYTSETKERTPKHEIHQICEKDVQQDLSLEMEKITETSAIKLIGEWSREQSP
                     ETSHRTPVEDTTQGCSECISELSLSGPDASVPMDFLENQVTIQTLQLQVKETSNENLR
                     LLHGIKERDQKVESLLNEIKELDSKLNLQEVQLTTKIEACIELEKIVEELKKEKSDFS
                     EKLESFSRDNQRVESSRGLTSNLEMGTDKLSHEGIEDEVAEVADNWRERCLSVENELQ
                     RMKAERGSTEHHALSAEANLEVVQTEKLFLEKDNENKQKVINCLEEELLVVTSERDQL
                     RGELDTLSKENQELDQRSEKMKEKIQELESHQDEYLHLQEQLQSLEKDSQALSLVRSE
                     LENQIRQLNKETESLVRESESLQTKLSELEHEKLTVTEALEAALMEKGEVAVRLSSTQ
                     EEVHQLRKGIEKLRVRIEADEKKQLHISEKLKESERRNDSLQDKVETLERELHMAEEN
                     QELVILDAENSKAEVETLKTQMELMTESLKALDLDLVTIRSEKENLVKQLQEKQGQVS
                     ELHTLLSSLKNVLEEKEREKIQMKEESKAVVEILQTQLKELSEEVAALCDDQETWKAE
                     EQSLDSPVQEVHQLRNNIGKLKVHLDTNERKQLHISEKLKESEHQAALLKDTVENLER
                     ELEVSGKNQEHVILEAEKSKAEVETLKAKIEAMAPNLRALELDLVNTRSEKEDLTKEL
                     QKEQGRVSELETLNSSFENLLQEKEQEKEQMKEESKAVVEILQTQLKELSEKVAALCD
                     DQETWKVEEQSLSSQVDSLEHEKAQLLQGLDEAKSNYMLLQSSVNGLIQEVEDGKQKL
                     EKKDEEIRILKNHIQDQEQLVSKLSQMEGEQQLWEEQRTKLENLMVELEQKTQVLQSK
                     NDTLQDTLEALQNSSKDLEKELQLTKMEKLSFVEKGQLKELILENGELKKSLDCVHKD
                     QMEKQGKMREEIAEYQLRLQEAEKKHQALLLDINKQYEMEIQTYREKLTSKEECLSSQ
                     KVEIDLLKSSKEELNNSLKVTTEILEELKKTKMENLKYADKLKKENDRAQGKIKLLIK
                     SCKQLEEEKEMLQKEVSHLEAAQEKQKAGTVVDANVDELMTEMKELKETLEEKTKEAD
                     EYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQSKLNLRSSPSLNSVVPGPSPVPSA
                     TEKKLSSGQNKASGKRQRSGGIREDGGETTPSTPEKFSKKSRKAVKSGIHPAEDAEDA
                     EPEPEGLPEVVKKGFADIPTGKTSPYILRRTTMVTRTSPRLAAQRLAPSPLSLDKENL
                     AETSKPTAGGSRSQKVKVTQQSPVDSGTALREPTTRSLSISNLPERSSADSPREGLRA
                     KQGRLAPSPEAGPESKGSENCRVQ"
     misc_feature    162..1082
                     /gene="CENPF"
                     /note="Cenp-F N-terminal domain; Region: CENP-F_N;
                     pfam10481"
                     /db_xref="CDD:463106"
     misc_feature    <1023..>1865
                     /gene="CENPF"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    1605..3839
                     /gene="CENPF"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <5436..6332
                     /gene="CENPF"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    6003..8219
                     /gene="CENPF"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    6441..6860
                     /gene="CENPF"
                     /note="Leucine-rich repeats of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_leu_zip; pfam10473"
                     /db_xref="CDD:463102"
     misc_feature    6990..7406
                     /gene="CENPF"
                     /note="Leucine-rich repeats of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_leu_zip; pfam10473"
                     /db_xref="CDD:463102"
     misc_feature    <7974..>8582
                     /gene="CENPF"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    8796..8936
                     /gene="CENPF"
                     /note="Rb-binding domain of kinetochore protein
                     Cenp-F/LEK1; Region: CENP-F_C_Rb_bdg; pfam10490"
                     /db_xref="CDD:463111"
ORIGIN      
        1 agcgagcgaa tcgaaaacgg gtggcggtcg cgggcagttt gagttggaat ctgtgctcca
       61 gcccgcggcg gctgtactag ggcccgactc tctgagtcgg gtttttcccg actctgccag
      121 caagtttatt tataaatgtt tgaataataa aggagagcaa aatgagctgg gctttggaag
      181 aatggaagga aggcctgcct acaagagctc ttcagaaaat tcaagagctt gaaggacagc
      241 tcgacaaact gaaaaaagaa aggcagcaaa ggcagtttca acttgaaacc ctggaggctg
      301 cgttgcagaa gcaaaaacag aaggttgaga atgaaaaagc tgagggtgca aacctgaaaa
      361 gggagaacca aagcttgatg gaaatatgtg aaaatctgga gaagactaag cagaagattt
      421 ctcatgaact tcaagtcaag gagtcacaag tgaatttcca agaaggacaa ctgaactcaa
      481 gcaaaaagca aatagaaaaa ctggaacagg aacttaaaag gtgtaaatct gaacttgaaa
      541 gaagccaaca agctgcacag tctgcagatg tctctctgag tccatgcact acaccacaaa
      601 aaatttttgc aactccactc acaccaagcc agtattatag cggttccaaa tatgaagatc
      661 taaaagaaaa atataataaa gaagttgaag aacgaaaaag attagaggca gaggtgaaag
      721 ccttgcaggc aaagaaagca agccaggcta ctccccaaag caccatgaat caccgggaca
      781 ttgcccgaca tcaggcttca tcatctgtgt tctcatggca acaagaaaag accccaagtc
      841 gtctttcatc caatgctcta aaaactccaa ttaggagaga tttctctgca tctagttttt
      901 ctggggaaca agaagtgact ctgagtagat caactttgca aatagggaat agagatgcta
      961 atagcagttt ctgtgataat tctagcaatt ctcatctttt ggatcaattc aaagcccaga
     1021 atcaagagct aaggagcaag attagtgagt tggaactacg tctgcaagga caagaaagag
     1081 aaatgaaagg ccaagtgaac aagcttcaag aactccaact ccaagtggag aaagcaaaag
     1141 cggaattaaa cgaaaaagag aaagttttga acaaaagcag ggatgaactg gtgagaacaa
     1201 ctgcacagta tgaccaggca tcaaccaagt gtattgcttt ggagcaaaaa ctgaaaaaat
     1261 tgactgaaga tttgagttgt cagcgtcaaa atgcagagag tgccagatgt tctctggaac
     1321 agaaaatcaa ggaaaaagaa aaagagttcc aagaggagct ctcccgtcaa cagcgttcct
     1381 tccaaaccct ggaccaagag ttcactcaga cgaaagccaa gctcacccag gagctacagc
     1441 aagccaagaa catgcacaac atcctccagg ctgaactgga taaagtcaca tctgtaaagc
     1501 accagctgga aaaaaaattg gaagagttta aggaaaagtt cagtagaact gaacagacct
     1561 tacaggcgag tcagaccaag gaaaatgagc tgaggagaag cagtgaggaa atgaagaggg
     1621 aaaacagcct ccttaagagt cagtctgagc aaagggccag agaattttgc cacctggagg
     1681 aagaactgaa gaaggccaag cagcgtttga gtcagagcca gaactttgca gaagaaatga
     1741 gggctaagaa tacttctcag gaaaccatgt taagagatct tcaagaaaaa atcaatcagc
     1801 aagagaattc cttgacttta gagaaactga agcttgccct ggctgatctg gaaaagcagc
     1861 gagattgttc tcaagacctt ttgaagaaaa gggaacatca cattgaacaa ctgaatgaaa
     1921 agttaagcca aacagagaga gagtccgaag ctttattgag tgctttggaa ttaaagaaga
     1981 aagaatatga agaattgaaa gaagagaaaa ctctgttttc tcgctggaaa agtgaaaatg
     2041 aacaactttt aaatcagatg gaatcagaaa aggaaagctt gcagagtaaa attaatcact
     2101 tggaaacctg tcttaagaca caacaaataa aaagtcacga atacaatgag agggtaagaa
     2161 cactggagat ggaaagagaa aatctgactg tcgagatcag gaaccttcac aatgtgatag
     2221 acagcaagac tgcagaggca gagacacaga agcaagctta tggagaacta caacagaaag
     2281 ccgagttctc agatcagaaa catgagaagg aaatagaaaa tatgtgtttg aaaatttctc
     2341 agcttaccag gcaagttgaa gatctagaag ataagcttca gtcactgtca agtgaaataa
     2401 tggacaaaaa ccagcgttac caagacttgc acgctgaatc tgagagcctc agggatctgc
     2461 taaaatccag agattcctct gcggtgacaa gtgagtctca tcagagaagt cttttggcat
     2521 ttgaacagca gtctgcagtg aataattcct ttgcaaatat aattgaagaa caagaaagcg
     2581 tgccttcaga aaggagcgaa tgccatttag aaacagacca cagtcctaaa agctcatcca
     2641 tgttacaaaa cagagtcgtt tctcttgaat tttcattaga gtctcaaaag cagatgaact
     2701 cagatctgca aaagcagtgt gaagaattgg tgcaaatcaa aggagaaatt gaagaaaatc
     2761 tcatgaaagc agaacagatg catcaaagtt ttgtggctga aacaagtcaa cgaattagta
     2821 agttacaaga agacacttct gttcatcaga atgttgttgt tgaaacttta gctgccttgg
     2881 agagcaagga aagagagttg caacttttga atgaaaagtt agaaactgag caggcagaga
     2941 ttcaagaatt aaaaaagagc aaccatttac ttcaggaatc tctaaaggag ctacaacttt
     3001 tgtctgaaac tctgagcttg gagaaaaagg aaatgagttc catcatttct cttgataaaa
     3061 aggacattga agagctgacc caagagaatg ggactctcaa ggaaattaat gcaaccttaa
     3121 cccaagagaa gatgaacttg ctccagaaaa ctgagagttt ttcaaactgt atagatgaaa
     3181 gagacaaaag catttcagag ttatctgacc agtacaaaca agaaagactt actttgctcc
     3241 aaagatgcga agaaacggga aacgcatttc gggatcttag tgaaaaatat aaagcagagc
     3301 aggaaaagaa ctctaaatta gaatgcttgc tgaatgaatg cacgagtgtt tgtgaagata
     3361 gaaaaaatga attgggacag ctaaaggaaa catttgcaag ggaacaccaa gcatttgtat
     3421 cacaattagc attagctgaa gaaagaaacc agagtttaat actagagttg gagacaatgc
     3481 agcaagccct gagatctgag gttacagata tccaaagcaa ttccaagagg gaggctgaca
     3541 gcttaaagca agaaatcatg actttaaagg aagaacaaag taagatgcaa caggaagtta
     3601 atgccttatt acaagagaag gagcacctga tggaattaat gaagacgaaa catgagcatc
     3661 agcatctaga attggaacca attcaagact ctgtgaaagt agcagagagg aagataaata
     3721 cacgtcacgt tcaacttccg atggaccttg aagttaaaga tgcttctcta gacagttata
     3781 acgcgcaact ggcacaagga gaaactaaag tgagaaacat ggaattaaaa cttcaggaga
     3841 gtgagaagga ggagtaccta cagcacgaat tacaagctgg aggagaatta gaaactggag
     3901 atgtgcaaca agacattcag tcacgagata ttagtggcct tggaaacttt gaaatagatc
     3961 cagaggaaaa atacgtttcg gtgcttcacg agttatcaac aagtcagcag gacaatgccc
     4021 acctgcagtg ctctctacag atggcaatga acaagctgga cgagttagag aagatgtgtg
     4081 aggcattgca ggtggaaaag cttgaactca tatctgagct gaacgactca agatcagaat
     4141 gtgtcacagc aactagcaaa atggcagaag aggtagggaa actagtaaat gaggttaaaa
     4201 tattaaatgg cgaaaatgga cttctccaag gtgagttcgt gaaagaaacg ccagaaagtg
     4261 aatttggtga acagcaagat gagcagacgt ctgtgtcctt aaatcctttg gatgacagta
     4321 attcctatga gcacttgaca gtgtcaaaca aagaagttcg catgcacttt gctgaattac
     4381 aggagaaatt ctcatcttta cagagtgaac acaaaatttt acacgatcag cactgccaga
     4441 tgagctctaa gatgtcagag ctacagtcct acattgacac gttaaaggct gaaaattcag
     4501 tcttgtccat gagtctgaga aactctcaag gtgacttggt aaaggaggtg atgccaggac
     4561 ccggggagaa gcattttctg tccttgtcac tctctggtgt gactgacagc cctggtaatg
     4621 caatagaatc ctctttttac aaagatgttt tagagcatat gggagaaaca tcccttttga
     4681 ataatttaga caggactgtt ttggcaaacc agtccagtgt agagaaggtc tcttgcagta
     4741 gtctggagga ggagaatctg actgagagag aaatcccctc tgtcccgctg aggagcgttg
     4801 aagaacttga gaccgtctct cagatgtacc tgcagtcctt caagaagcta gaagagaaaa
     4861 ttgaaagtca agggattacg aaaaataagg aaatcgaaga actcgaacgg ttactaagtt
     4921 cttcaaggga agagcttgac tgtctcagga agcagtattt gtcagaaaag gagcagtggc
     4981 agcagaagct gacaagtgtg acagcagaga tggagtccaa gttggtggca gaaaagaaac
     5041 acacggaaca ccttactctt gagctcgaag tagcgcgact ccagcttcaa ggtctggact
     5101 taagctctcg gtctctgctt ggcaccgaca tagacgatgc tattcggggt ggagacgata
     5161 gctgtgaaat aagagaattg gaagactata cttcagaaac taaagagagg acaccaaagc
     5221 atgagattca tcagatttgt gaaaaagatg ttcagcagga cctcagtcta gagatggaga
     5281 aaataactga gaccagtgca atcaaactta taggagagtg gtccagggag cagtccccag
     5341 aaaccagtca taggacccca gtggaagaca caacccaggg ctgttcagaa tgcatttctg
     5401 aattgtcact ttctggtcct gatgcttcgg tacctatgga ttttctggag aatcaggtaa
     5461 ccattcagac tctccaactg caggtaaaag agacatcaaa tgagaatttg agattacttc
     5521 atggcataaa ggaacgtgac caaaaagttg aaagcttgct aaacgaaatc aaagagttag
     5581 actcaaaact caatttacag gaagtacaac taactaccaa gattgaagca tgtatagaat
     5641 tggaaaaaat tgttgaggaa cttaagaaag aaaagtcaga tttcagtgaa aaattggaat
     5701 ccttttctcg tgataaccag agagtagaaa gttcgagagg cctcacttct aacttagaaa
     5761 tgggcacaga taaattgtca catgaaggta ttgaagatga ggtagccgag gtggctgaca
     5821 actggagaga gagatgtctc agtgtggaaa atgagctgca gaggatgaaa gctgagagag
     5881 gaagcacaga gcatcacgcc ctctctgcgg aagccaactt agaggtagtt caaacagaga
     5941 agctgttttt agaaaaagac aatgaaaata agcagaaagt tataaactgt cttgaggaag
     6001 aactcttggt ggtcacaagt gagagagacc agcttcgtgg agaattagat actttgtcaa
     6061 aagaaaatca agagctggat cagaggtctg aaaagatgaa ggagaaaata caagagctcg
     6121 aatctcatca agatgagtat ctacatctcc aagagcagct gcagagtttg gaaaaggact
     6181 ctcaggcact gtctttggta agaagtgagc tggaaaacca aatcagacaa ctgaataaag
     6241 agacagaatc actcgtaagg gaatccgaga gcctgcagac caaactgagt gaattggaac
     6301 atgaaaagct gaccgtcacc gaggccttgg aggctgcact gatggagaaa ggcgaggtcg
     6361 cggtgaggct gagctcaacg caggaggaag tgcaccagct gagaaaaggc attgagaaac
     6421 ttagggtccg cattgaggcc gatgaaaaga agcagctcca catctcagag aaactgaaag
     6481 aaagcgagcg taggaacgac tcgcttcagg ataaagttga gacccttgaa agggaattgc
     6541 atatggcaga agaaaaccaa gagctggtga ttcttgatgc tgagaattcc aaagcagagg
     6601 tggagaccct aaaaacacaa atggaattga tgactgaaag cctgaaagct ttagatttag
     6661 accttgtcac catacggtcc gaaaaagaaa atctggtgaa acaactacaa gaaaaacaag
     6721 gtcaggtgtc tgaattacac acgttactct cttcattgaa aaatgtatta gaagaaaagg
     6781 agcgagagaa aatacagatg aaagaagaat ctaaagctgt ggtggagata ctgcaaacac
     6841 aattgaaaga gctaagtgag gaagtagcag ccttgtgtga tgaccaggag acctggaagg
     6901 cggaagaaca gagtctggac tccccagtgc aggaagtaca tcagctgaga aataacattg
     6961 gaaagctgaa agtccaccta gatactaatg aaaggaagca gctccatatc tcagaaaaac
     7021 tgaaggaaag tgagcatcag gcagctttgc ttaaggatac agttgagaac cttgaaagag
     7081 aactagaggt atcaggaaaa aaccaagagc atgtgattct tgaggctgag aagtccaaag
     7141 cagaggtaga gaccctgaaa gcaaaaatag aggcgatggc cccaaatctg agagctttgg
     7201 agttagatct tgtcaataca aggtcagaaa aagaagatct gacaaaagaa ttacaaaaag
     7261 agcaaggtcg agtgtctgaa ttagaaacat taaactcttc atttgaaaat ctattgcaag
     7321 aaaaagagca agaaaaagaa cagatgaaag aagaatctaa agctgtggtg gagatactgc
     7381 agacacaatt gaaagagcta agtgagaaag tagcagcctt gtgtgatgac caggagacct
     7441 ggaaggtaga agaacagagc ctgagtagtc aggtagattc ccttgaacat gagaaggctc
     7501 aactgctaca gggccttgac gaagccaaaa gtaattacat gcttttgcag tcttctgtga
     7561 atggcctcat tcaggaagta gaagatggca aacagaaact agagaaaaag gatgaagaaa
     7621 tcaggatact aaaaaatcat attcaagacc aagagcagct ggtctctaaa ctgtcccaga
     7681 tggaaggaga acagcaactt tgggaggagc aaagaacaaa actggaaaat ctgatggtgg
     7741 aattggagca gaagacccag gtgctgcaat ccaaaaatga cactttgcaa gacaccttag
     7801 aagctctgca gaattcttcc aaggatctgg agaaagagct tcaattgaca aaaatggaaa
     7861 aactgtcctt tgttgaaaaa ggtcagctga aggagctcat tctagaaaac ggtgaactga
     7921 agaagagttt ggattgtgta cacaaagacc agatggaaaa gcaagggaag atgagagaag
     7981 aaatagctga atatcagcta cggcttcagg aagctgaaaa gaaacaccag gctttgcttc
     8041 tggatataaa caaacagtat gaaatggaaa tccagacata tcgagagaaa ttaacttcta
     8101 aggaagaatg tctcagctcc cagaaggtgg agatagacct cttaaagtcc agtaaagaag
     8161 aactcaataa ttctctgaaa gtgaccactg agattttaga agaattgaag aaaaccaaga
     8221 tggaaaatct aaaatatgca gataagttga agaaggaaaa cgatcgtgcc caggggaaaa
     8281 taaagttgtt gatcaaatcc tgtaaacagc tggaagaaga aaaggagatg ttgcagaaag
     8341 aggtatctca tcttgaagct gcgcaagaga aacagaaagc aggtactgtt gtggatgcta
     8401 atgttgatga attaatgacc gagatgaaag aactgaaaga aacccttgaa gaaaaaacca
     8461 aggaggcaga cgaatacctg gataaatact gttccctgct tataagccat gagaaattag
     8521 agaaagccaa agagatgtta gaaacacagg ttgcccgtct gagttcacaa caatctaaac
     8581 ttaatcttcg aagttctcct tcgctgaatt cagttgttcc aggaccatcc ccagtccctt
     8641 ctgctactga aaagaagtta tcatctggcc aaaataaagc ttcaggcaag aggcaaaggt
     8701 ccggtgggat tcgggaggat gggggagaaa ccacaccttc tacaccagag aaattttcta
     8761 aaaaaagcag gaaagcagtc aaaagtggta ttcatcctgc agaggatgca gaagacgctg
     8821 agcctgagcc agagggactt ccagaagttg taaagaaagg gtttgccgac atcccaacag
     8881 gaaagactag cccatacatc ctgcggagaa caaccatggt gacaaggacc agcccccgcc
     8941 ttgctgcaca gaggttagca ccatcccccc taagtctcga caaagaaaat ctcgctgaga
     9001 cctccaaacc aacagctggt ggcagcagat cacaaaaggt caaggttact caacagagcc
     9061 cagtggattc aggcactgcc ctccgagaac ccaccaccag atctctctcc atcagtaacc
     9121 ttcctgagag aagttcggct gacagcccca gggagggcct gagggccaag caaggccggc
     9181 tggctcccag cccagaagct ggccccgagt ccaagggcag tgagaactgt agggtccagt
     9241 agaagagccc ttgtgtgtca gcacccctgg aaggtggctg tagttgagta gaaggcagtg
     9301 tgtctgtggg gtttttcttt attaagggag cacattatca gagggaagaa aactattcct
     9361 tataaatcta aatatgttgg actctttaga tcgcccctgt ataacagtta gaaaagtttg
     9421 gaagcactga ttacctcttc attgatattc ctcttctgta atgtataata gtcctgtata
     9481 aagctttctg gtaatgttaa cacaaatggc aagcactata taacaactcc tgtttttata
     9541 cggactttta cactaaaaaa ttgcaacaca ttttttactt gcaacaaaca gctcccagga
     9601 aaatgtaaac ttgctttatg gtatttcctt ggtatagtgt taagcataaa ataattttag
     9661 atcaagaatt tctttgagtt gagtaaaaca aaagaaaaca atgttatatg tgttcaaggg
     9721 aaacatgcgc acaaatacat atgtgggtgt gtccctcctc ttccaatgtg ttttctaaat
     9781 cttggcttat ataacctgta catatttgtg tgtggggtag tgggagttgt gtgttgattt
     9841 ccaattagcc tggttgcaga ctcctcagag gtgtagcata tcaagttttc tgtcattgtg
     9901 ctgtttctgt tgaagaccaa tttgttgtag tattttggta tgcattctga taaatggtgg
     9961 tcttctatta aaatatggca tcttttctat taaaaaattc a
//
LOCUS       XR_004351919             342 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761059
            (LOC116761059), ncRNA.
ACCESSION   XR_004351919
VERSION     XR_004351919.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..342
                     /gene="LOC116761059"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116761059"
     ncRNA           1..342
                     /ncRNA_class="lncRNA"
                     /gene="LOC116761059"
                     /product="uncharacterized LOC116761059"
                     /db_xref="GeneID:116761059"
ORIGIN      
        1 gataggaccc cggtctcaga gaacacttac gtgaggacgg aaagcaggaa ccacaagaca
       61 ttcctaccca gcatctgctc gttacactgg aagatggtgt gagacaggac actctgagcc
      121 tgtcctcagg ctgtgaagga cccatgtcca cttaaatcca cggtgtgtag gaagtgttag
      181 aaagagggaa catcagagaa aaagtgcctc ctttaggacc tcatcgagcc caaatccaag
      241 agaagagcag accttggtat tagatcgttg gtctccaggg actcccagtt actgccttaa
      301 gatgtcagtg tctgtatacg ttgcctggtt agtaaacttt gg
//
LOCUS       XM_032646768             741 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 593 (ZNF593), mRNA.
ACCESSION   XM_032646768
VERSION     XM_032646768.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..741
                     /gene="ZNF593"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 4
                     Proteins, and 90% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761062"
     CDS             187..591
                     /gene="ZNF593"
                     /codon_start=1
                     /product="zinc finger protein 593"
                     /protein_id="XP_032502659.1"
                     /db_xref="GeneID:116761062"
                     /translation="MGRSRRTGAHRAHSLARQMKTKRRRPDLDEIHRDLRLQVAARPR
                     PDPSAEPDPDLPGGGLHRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEA
                     ERAAGMGSYVPPQRLAVPTEVSTAVPEMDTST"
     misc_feature    187..540
                     /gene="ZNF593"
                     /note="U1-like Zn-finger-containing protein [General
                     function prediction only]; Region: UFD2; COG5112"
                     /db_xref="CDD:227443"
ORIGIN      
        1 gtcactgaca tcgacggccg cctgggggcg ctcgaggcgc ggcccgcgcg agtgacgtca
       61 tcagaggcgg tctggcagag cctgatcatt cccagggcgt cacaaggcgt cattgagcag
      121 tccggaagcg cccacgcgtg ttctcccagc tcggctctgg gacccctagg cctgctgtca
      181 cacgccatgg gtcgctcccg ccggacgggc gcgcaccgag cgcactccct ggcccgccag
      241 atgaagacga agcggcggcg gccggacctg gatgagattc accgcgattt gcggctccag
      301 gttgccgcac ggccccggcc agacccaagc gcggaacccg atcccgacct gccagggggc
      361 ggcctgcatc gctgtctggc ctgcgcgagg tacttcatcg attctgccaa cctgaagacc
      421 cacttccgat ccaaagacca caagaaaagg ctgaagcagc tgagtgtgga gccctacagt
      481 caggaagaag cagagagggc agcgggtatg ggttcctatg ttcctcccca aaggctggca
      541 gtgcccacag aagtatccac cgcggtccct gagatggaca cgtctacctg acatggcctg
      601 aggatgcaag gcagaggagc tgcccatgga cagtgatgca agggccaggc tgggagagac
      661 tatgccagtc tcttttggtt tgggaagtag atggcctctg ccgggtgccc tccctcccaa
      721 taaaagaact ggataaagag a
//
LOCUS       XM_032646781            1569 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cornichon family AMPA receptor auxiliary
            protein 3 (CNIH3), transcript variant X1, mRNA.
ACCESSION   XM_032646781
VERSION     XM_032646781.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1569
                     /gene="CNIH3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 85%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761068"
     CDS             38..520
                     /gene="CNIH3"
                     /codon_start=1
                     /product="protein cornichon homolog 3 isoform X1"
                     /protein_id="XP_032502672.1"
                     /db_xref="GeneID:116761068"
                     /translation="MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKNPIDQ
                     CNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHF
                     WRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS
                     "
     misc_feature    56..490
                     /gene="CNIH3"
                     /note="Cornichon protein; Region: Cornichon; pfam03311"
                     /db_xref="CDD:460883"
ORIGIN      
        1 gtggtggggt tggagtgcgg gcggcccccg gccggccatg gccttcactt tcgctgcttt
       61 ctgctacatg ctgtcgctgg tgctgtgcgc tgcgctcatc tttttcgcca tctggcacat
      121 aattgccttt gatgagttaa ggacggattt taagaacccc atcgaccagt gcaaccctgt
      181 tcacgcgagg gaacggctga ggaacatcga gcgcatctgc ttccttctac gaaagctggt
      241 gctgccagaa tactccatcc acagcctctt ctgcatcatg ttcctgtgtg ctcaggagtg
      301 gctcaccctg gggctgaatg tccctctact tttctatcac ttctggaggt acttccactg
      361 tccggcagat agctccgaat tagcctacga cccgccggtg gtcatgaacg cagacacctt
      421 gagttactgt cagaaggagg cctggtgtaa gctggccttc tatctcctct ccttcttcta
      481 ctacctttac tgcatgatct acactttagt gagctcttaa ctcaaagacc acgcacatcc
      541 tcagagactg ggatgggaga ggcccgaggc tgcgcagtcc acttccgctg gtgatgggag
      601 aagggaccag tgtggggatg tgacagacag agacgggcag acactctgaa tcggaagccg
      661 gaagcatgca gcagccagcg gccgagcgcg cacgtgttgt caccctgtgt gtcagtcttt
      721 ggcgttcaca ccccacactc gggctgtaga tcccttctga gcagcggggg cacgaggggt
      781 gacgaaacgc gaaacctctt ctgagcgaga attgcggctt cctgaatcca ctttattgaa
      841 tggctccctg aagttcacac tgcgttcctg ggccgtgggc gtggaggctg gatggctggc
      901 aggtgcctgc taaggaacag cgtgacccag ggtcaaggct gtatctgtgg gactgattga
      961 agtcctcaag gacgtcacca gctacctgag actctcgtgt ttcttccaag ccctggccac
     1021 gcccttcact tcagtgggag gggcctggaa ggtgtgcaga cttgccttgg gctataacca
     1081 gccctgagcc tgcaggggtg tctattttcc tgctgtgctt tgtaagagcc cagcttagga
     1141 tgttagtgac atcacaagct gaatttggga cagtacgttg gtaaagagtt atggccaaag
     1201 tcagggcttg ggggtggtga gatgggaagc ggggaatcat aggaaaaaat gattttttaa
     1261 aacactgatg acatgttcaa ggtgttattt cttcaccacc acaaactgta ttcttctgtt
     1321 gtcatcccaa actatcacag agtcgctgaa tgcaaatcaa ttggtcaaca ctagtcaaag
     1381 ctactgactt ttaagactcc caaaacaatt ctgaggccag aaaaagctgg agtggcagct
     1441 ctgtactgtg ggcatccggc agccgagaag tgagacgaca taattgtagc ttcatttatg
     1501 atgctgcatc attcgtgctg ttcggttcaa cacaaggaca ttagctcatt tagaattttc
     1561 cattcgaca
//
LOCUS       XM_032646792             509 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cornichon family AMPA receptor auxiliary
            protein 3 (CNIH3), transcript variant X2, mRNA.
ACCESSION   XM_032646792
VERSION     XM_032646792.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..509
                     /gene="CNIH3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 80% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761068"
     CDS             38..472
                     /gene="CNIH3"
                     /codon_start=1
                     /product="protein cornichon homolog 3 isoform X2"
                     /protein_id="XP_032502683.1"
                     /db_xref="GeneID:116761068"
                     /translation="MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKNPIDQ
                     CNPVHALVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYD
                     PPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS"
     misc_feature    56..442
                     /gene="CNIH3"
                     /note="Cornichon protein; Region: Cornichon; pfam03311"
                     /db_xref="CDD:460883"
ORIGIN      
        1 gtggtggggt tggagtgcgg gcggcccccg gccggccatg gccttcactt tcgctgcttt
       61 ctgctacatg ctgtcgctgg tgctgtgcgc tgcgctcatc tttttcgcca tctggcacat
      121 aattgccttt gatgagttaa ggacggattt taagaacccc atcgaccagt gcaaccctgt
      181 tcacgcgctg gtgctgccag aatactccat ccacagcctc ttctgcatca tgttcctgtg
      241 tgctcaggag tggctcaccc tggggctgaa tgtccctcta cttttctatc acttctggag
      301 gtacttccac tgtccggcag atagctccga attagcctac gacccgccgg tggtcatgaa
      361 cgcagacacc ttgagttact gtcagaagga ggcctggtgt aagctggcct tctatctcct
      421 ctccttcttc tactaccttt actgcatgat ctacacttta gtgagctctt aactcaaaga
      481 ccacgcacat cctcagagac tgggatggg
//
LOCUS       XM_032646802            2437 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pre-mRNA processing factor 3 (PRPF3),
            transcript variant X1, mRNA.
ACCESSION   XM_032646802
VERSION     XM_032646802.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2437
                     /gene="PRPF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 7 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761077"
     CDS             165..2216
                     /gene="PRPF3"
                     /codon_start=1
                     /product="U4/U6 small nuclear ribonucleoprotein Prp3
                     isoform X1"
                     /protein_id="XP_032502693.1"
                     /db_xref="GeneID:116761077"
                     /translation="MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDK
                     KKAADHLKPFLDDSTLRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEIS
                     KESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQL
                     SFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLA
                     LKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTH
                     RMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGK
                     FEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDVPEIEWWDS
                     YIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRR
                     QTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQ
                     KAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQ
                     LYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAV
                     KKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLEST
                     D"
     misc_feature    171..383
                     /gene="PRPF3"
                     /note="domain in splicing factors; Region: PWI;
                     smart00311"
                     /db_xref="CDD:214609"
     misc_feature    1086..1727
                     /gene="PRPF3"
                     /note="pre-mRNA processing factor 3 (PRP3); Region: PRP3;
                     pfam08572"
                     /db_xref="CDD:462524"
     misc_feature    1794..2183
                     /gene="PRPF3"
                     /note="Protein of unknown function (DUF1115); Region:
                     DUF1115; pfam06544"
                     /db_xref="CDD:461943"
ORIGIN      
        1 gtgggaccgc ggcgtggcgg cggcagtggc agtagcgacg gcaggccata gggcggtcag
       61 aaggtttccg gttccggtgt aacgttcggg ctccgtctca ggggctgaag ttagtgaggt
      121 gcagtattga atcctatttt gagctatcct ccttttcctg aagaatggca ctgtctaaga
      181 gggagctgga tgagctgaaa ccatggatag agaagacagt gaagagggtg ctgggtttct
      241 cagagcccac agtggtcaca gcagcactga actgtgtggg gaagggcatg gacaagaaga
      301 aggcagctga ccacctgaaa ccttttcttg atgattctac tctccgattt gtggacaaac
      361 tgtttgaggc tgtggaggaa ggccgaagct ctaggcattc caagtccagc agtgacagga
      421 gcagaaaacg agagctaaag gaagtgtttg gtgatgactc tgagatctcc aaggaatcat
      481 caggagtaaa aaagcgacgg ataccccgtt ttgaggaggt ggaagaggag ccagaagtaa
      541 tccctgggcc tccctcagag agtcctggca tgctgactaa gctccagatc aaacagatga
      601 tggaggcagc aacacggcaa atcgaggaaa ggaaaaaaca actaagtttc attagccccc
      661 ctacgcctca gccaaagact ccttcttcct cccaaccaga gcgacttcca attggcaaca
      721 ctattcagcc ctcccaggcc gccactttca tgaatgatgc cattgagaag gcaaggaaag
      781 cagctgaact acaagcccgc atccaagccc agctggcact gaagccaggg ctcatcggca
      841 atgctaacat ggtgggcctg gccaatctcc atgctatggg cattgctccc ccgaaggtgg
      901 agttaaaaga tcaaactaaa cctacaccac tgattcttga tgaacaaggt cgaactgtag
      961 atgcaaccgg caaggaaatt gagctgacac accgtatgcc tactctgaag gccaatattc
     1021 gggctgtgaa gagggaacaa ttcaagcaac agctaaaaga aaagccatca gaagacatgg
     1081 agtctaatac cttttttgac ccccgagtct caattgcccc ttcccagcgc cagagacgca
     1141 cttttaaatt ccacgataag ggcaaatttg aaaagattgc ccagcgatta cggacaaagg
     1201 ctcaactgga gaagctgcag gcagagatct cacaggcagc tcgaaaaaca ggcattcata
     1261 cttcaactag gctggccctc attgctccta agaaggagtt gaaggaaggt gatgtccctg
     1321 aaattgagtg gtgggactct tatatcatcc ccaatggctt tgaccttaca gaggaaaatc
     1381 ccaagagaga agattatttt ggaatcacaa atcttgttga acatccagcc cagctcaacc
     1441 ctccagtcga caatgacaca ccagttactc tgggggtata tctgaccaag aaggaacaga
     1501 agaaacttcg aaggcaaaca aggagggaag cacagaagga gctacaagag aaagtcaggc
     1561 taggcctgat gcctcctcca gaacccaaag taagaatttc aaatttgatg cgagtattag
     1621 gaacagaagc tgttcaagac cccacgaagg tagaagccca tgtcagagct cagatggcaa
     1681 aaagacagaa agcgcatgaa gaggccaacg ctgcccgaaa acttacagca gaacagagaa
     1741 aggtcaagaa aattaaaaag cttaaagaag acatttcaca gggggtacac atatctgttt
     1801 atagagttcg aaatttgagc aacccagcca agaagttcaa gattgaggcc aatgctgggc
     1861 agctgtacct gacaggggtg gtggtactgc acaaggatgt caacgtggta gtagtggaag
     1921 ggggccccaa ggcccagaag aaatttaagc gtcttatgct gcatcggata aagtgggatg
     1981 aacagacatc taacacaaag ggagatgatg atgaggaatc tgatgaggaa gctgtgaaga
     2041 aaaccaacaa atgtgtacta gtctgggagg gtacagccaa agaccggagc tttggggaga
     2101 tgaagttcaa acagtgccct acagagaaca tggctcggga gcatttcaaa aagcatgggg
     2161 ctgagcacta ctgggacctt gcgctgagtg aatctgtgtt ggagtccacc gactgagact
     2221 actgcaagcc cttgcctctc ccttcttgcc tgtgtctctt cagtcctctc ccttattcta
     2281 cttccaaacc cagccctact tgtgtgtgtg atctcagaac tgtgccaggc tgacattggg
     2341 acaaagggag aacgccttgc ttccttcccc agacagcctg gtgctgccct ttattcccct
     2401 tatgtgaata tgattaaaga gttattttta aagtcgg
//
LOCUS       XM_032646812            2540 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pre-mRNA processing factor 3 (PRPF3),
            transcript variant X2, mRNA.
ACCESSION   XM_032646812
VERSION     XM_032646812.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2540
                     /gene="PRPF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 1
                     Protein, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116761077"
     CDS             673..2319
                     /gene="PRPF3"
                     /codon_start=1
                     /product="U4/U6 small nuclear ribonucleoprotein Prp3
                     isoform X2"
                     /protein_id="XP_032502703.1"
                     /db_xref="GeneID:116761077"
                     /translation="MLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPE
                     RLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHA
                     MGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQ
                     QLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQA
                     EISQAARKTGIHTSTRLALIAPKKELKEGDVPEIEWWDSYIIPNGFDLTEENPKREDY
                     FGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLM
                     PPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKV
                     KKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVE
                     GGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSF
                     GEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLESTD"
     misc_feature    1189..1830
                     /gene="PRPF3"
                     /note="pre-mRNA processing factor 3 (PRP3); Region: PRP3;
                     pfam08572"
                     /db_xref="CDD:462524"
     misc_feature    1897..2286
                     /gene="PRPF3"
                     /note="Protein of unknown function (DUF1115); Region:
                     DUF1115; pfam06544"
                     /db_xref="CDD:461943"
ORIGIN      
        1 acgtgccgtg ggaccgcggc gtggcggcgg cagtggcagt agcgacggca ggccataggg
       61 cggtcagaag gtttccggtt ccggtgtaac gttcgggctc cgtctcaggg gctgaagtta
      121 gtgaggtgca gtattgaatc ctattttgag ctatcctcct tttcctgaag aatggcactg
      181 tctaagaggg agctggatga gctgaaacca tggatagaga agacagtgaa gagggtgctg
      241 ggtttctcag agcccacagt ggtcacagca gcactgaact gtgtggggaa gggcatggac
      301 aagaagaagg cagctgacca cctgaaacct tttcttgatg attctactct ccgatttgtg
      361 gacaaactgt ttgaggctgt ggaggaaggc cgaagctcta ggcattccaa gtccagcagt
      421 gacaggagca gaaaacgaga gctaaaggag ttccaggaag cgctcgcccc tggccgagga
      481 tatgtccttg caaaacacga gccctcctag tgaagagggg atgtcaccca aagcctacca
      541 ccggaagtgt ttggtgatga ctctgagatc tccaaggaat catcaggagt aaaaaagcga
      601 cggatacccc gttttgagga ggtggaagag gagccagaag taatccctgg gcctccctca
      661 gagagtcctg gcatgctgac taagctccag atcaaacaga tgatggaggc agcaacacgg
      721 caaatcgagg aaaggaaaaa acaactaagt ttcattagcc cccctacgcc tcagccaaag
      781 actccttctt cctcccaacc agagcgactt ccaattggca acactattca gccctcccag
      841 gccgccactt tcatgaatga tgccattgag aaggcaagga aagcagctga actacaagcc
      901 cgcatccaag cccagctggc actgaagcca gggctcatcg gcaatgctaa catggtgggc
      961 ctggccaatc tccatgctat gggcattgct cccccgaagg tggagttaaa agatcaaact
     1021 aaacctacac cactgattct tgatgaacaa ggtcgaactg tagatgcaac cggcaaggaa
     1081 attgagctga cacaccgtat gcctactctg aaggccaata ttcgggctgt gaagagggaa
     1141 caattcaagc aacagctaaa agaaaagcca tcagaagaca tggagtctaa tacctttttt
     1201 gacccccgag tctcaattgc cccttcccag cgccagagac gcacttttaa attccacgat
     1261 aagggcaaat ttgaaaagat tgcccagcga ttacggacaa aggctcaact ggagaagctg
     1321 caggcagaga tctcacaggc agctcgaaaa acaggcattc atacttcaac taggctggcc
     1381 ctcattgctc ctaagaagga gttgaaggaa ggtgatgtcc ctgaaattga gtggtgggac
     1441 tcttatatca tccccaatgg ctttgacctt acagaggaaa atcccaagag agaagattat
     1501 tttggaatca caaatcttgt tgaacatcca gcccagctca accctccagt cgacaatgac
     1561 acaccagtta ctctgggggt atatctgacc aagaaggaac agaagaaact tcgaaggcaa
     1621 acaaggaggg aagcacagaa ggagctacaa gagaaagtca ggctaggcct gatgcctcct
     1681 ccagaaccca aagtaagaat ttcaaatttg atgcgagtat taggaacaga agctgttcaa
     1741 gaccccacga aggtagaagc ccatgtcaga gctcagatgg caaaaagaca gaaagcgcat
     1801 gaagaggcca acgctgcccg aaaacttaca gcagaacaga gaaaggtcaa gaaaattaaa
     1861 aagcttaaag aagacatttc acagggggta cacatatctg tttatagagt tcgaaatttg
     1921 agcaacccag ccaagaagtt caagattgag gccaatgctg ggcagctgta cctgacaggg
     1981 gtggtggtac tgcacaagga tgtcaacgtg gtagtagtgg aagggggccc caaggcccag
     2041 aagaaattta agcgtcttat gctgcatcgg ataaagtggg atgaacagac atctaacaca
     2101 aagggagatg atgatgagga atctgatgag gaagctgtga agaaaaccaa caaatgtgta
     2161 ctagtctggg agggtacagc caaagaccgg agctttgggg agatgaagtt caaacagtgc
     2221 cctacagaga acatggctcg ggagcatttc aaaaagcatg gggctgagca ctactgggac
     2281 cttgcgctga gtgaatctgt gttggagtcc accgactgag actactgcaa gcccttgcct
     2341 ctcccttctt gcctgtgtct cttcagtcct ctcccttatt ctacttccaa acccagccct
     2401 acttgtgtgt gtgatctcag aactgtgcca ggctgacatt gggacaaagg gagaacgcct
     2461 tgcttccttc cccagacagc ctggtgctgc cctttattcc ccttatgtga atatgattaa
     2521 agagttattt ttaaagtcgg
//
LOCUS       XR_004351921            2754 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761084
            (LOC116761084), ncRNA.
ACCESSION   XR_004351921
VERSION     XR_004351921.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2754
                     /gene="LOC116761084"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 46% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761084"
     ncRNA           1..2754
                     /ncRNA_class="lncRNA"
                     /gene="LOC116761084"
                     /product="uncharacterized LOC116761084"
                     /db_xref="GeneID:116761084"
ORIGIN      
        1 tctatgggtg cttcctcagc ggctgcctct ggctcgggct ttttccagaa gaggaggtag
       61 ccaaatactc aggcctcagt actaatgggc gctttgcgat tccaggtaaa gtagccactc
      121 ccagaagggc agcgatggcc ccaatcacac acctaattgg cggccaacca ggggccggaa
      181 cacagctgcc aactttcagg ttcagctctt tgggaagcat gtgaggactg taagggcttt
      241 ggtgccatca ggtcctgggt ttggattcct gttttgccac tgacatccag gaaatcagag
      301 aaatttatgt ttccactctg agcttcaata cctgcatctc ttaaagaaga taactaatgc
      361 ctacctcatg gccatgatgg cgaagatttg gatatgataa gggctgtgat gcacttgggc
      421 acagtaggtg ctgaaaaaaa atgcgtaggg attcccggat tccccttgtg ggatcagtgc
      481 ctatcttcct ctctgacagt tcctgaaacc tcacctctct tgtaagtagg ttcttgaaag
      541 ttggagccag atgactgata caggttctgt gtgaagatta aggaatttga aaataaaata
      601 tcggttatct atcggctgta gaacaaatta cacccaaact tagcagttta aaacagtcat
      661 ttcactgtgc tcacagcttc tgtaggtcag gaattcaaaa aaaaagcaca gctccatggt
      721 gctatgacct caactgggag aattcaaagg ctgagggaag aaatcctgtg caggtatctt
      781 cactcacatt ccccgcccag tgaggccctc atattaggag tacagcagcc tttactgtat
      841 ggcaaccatg ggtctgaaag caagtttccc aagagaacca ggcaaaaact gtcacccttt
      901 tcttgtccta accttgggag tcacataaca tcatttctgc tgggtctcaa acccctccaa
      961 gttcaagaag aggcaatggg ctccactttt tttttttttt ttcggtatat gggcccctca
     1021 ctgttgtggc ctctcccatt gcagagcaac aggctctgga cgcgcaggct cagcggccat
     1081 ggctcacggg cccagccgct ccgcggcatg tgggatcttc ccggaccggg gcacgaaccc
     1141 gtgtcccctg catcagcagg cagactctca accactgcgc caccagggaa gccccgggct
     1201 ccaccttttg atgggaggaa tgtcaagatc acattgtaag aacacatgaa acgggagctt
     1261 ttgttatcga ctctttggaa aatgcagttt gccacagggg tgagtcaata ataagtcctt
     1321 gaaatttttt actggatctg ataggagtgt gaaagataga gttgaggaga atatctacaa
     1381 tgccattgac acagagaagg gaacgtagag aagtagacaa tgggataggg tcagtctcat
     1441 gcaggcgatg aggaagaaaa taaaaagggg aaataagagt caataggact ctgaggtttt
     1501 gaacatggat gctcagaagg gtggtgctgc cattacctga gacagggaag tcacagagaa
     1561 aagcagggac tccctcttcc ctctttactc accacagact tgctcatctt ccaacaactc
     1621 acatatatgt ctcaatctgt tttgcatgca tgccctttgc ttttcacgga tctgcatgtt
     1681 agctcagatc ctgaggtctc agtaagtccc taaggggctg ggatgatgac tcttggagag
     1741 atgacatcaa gggctataac tggaaatgaa gccatttatg aatctggttt tgtatcaaga
     1801 tcctgtgtta actaagcttt cctatatagc taaaaatcca ggaagaaaca actgcccatg
     1861 tggagcttct gcaaaatgtt ttaataccat cgtgaaaggt atgatcaaaa cattccctgg
     1921 ggaaggctct cgggtttctt ttatagcatg atctgtcctt ggagatcagg cccttaggag
     1981 agccatactt gatcacattt tcaaggctct gctggcagta cctcttcttc cctggtctct
     2041 gctacccagg gtacagagat ggtttaagta atttcatcca ttccagagaa gcttaacttc
     2101 acttcattcc agagaatttt gggttcccag gagatgtcaa aaggaagtta gctataagat
     2161 cattttaaaa cattctaaat gaatgcaatc cttctcctag tggccagggg aggctaagca
     2221 gttattccag agaaactgcc cttgcttaaa catttcagga actggccttt aggaattgtt
     2281 tttgaagtca ctccatgaaa ccatcatcat tatatacttt gtttttgacc ccaaattgcc
     2341 ttacccactt ttatttgcaa gtgacaggaa ttaactcaat ttaaatgaaa aagcaaattt
     2401 actggctcac ataataggaa aggttggagc gaaccagcat caggtatggc tggatccagg
     2461 ggtttaaatg gtatcatcag atctctgcct ctttcagttt tctctgttgg ttcaacccat
     2521 tatgtaacac tacagatggc ttcctgcatg tgccaaggag gaaggctacc agcaacccca
     2581 agactatgtc atcccagttt agcaacctca gggaaaggaa ggcctgctcc ccaataactt
     2641 ccccttcccc attcccaccc ttgttcttat atcattccca ggcaggactc tgattgtccc
     2701 agactgagcc acgtgtccat tgctgtggct tggagggaaa gatttgttac tagg
//
LOCUS       XM_032646833            1629 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus calcyclin binding protein (CACYBP),
            transcript variant X1, mRNA.
ACCESSION   XM_032646833
VERSION     XM_032646833.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1629
                     /gene="CACYBP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 9 long SRA reads, 13
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761090"
     CDS             238..930
                     /gene="CACYBP"
                     /codon_start=1
                     /product="calcyclin-binding protein isoform X1"
                     /protein_id="XP_032502724.1"
                     /db_xref="GeneID:116761090"
                     /translation="MASTVEELQKDLEEVKVLLEKATRKRVRDALTAEKSRIETEIKN
                     KMQQKSQRKAELLENEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVP
                     AENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKIKTDTVLILCRKKA
                     ENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVE
                     SREKQAKGDTEF"
     misc_feature    244..468
                     /gene="CACYBP"
                     /note="Siah interacting protein, N terminal; Region:
                     Siah-Interact_N; pfam09032"
                     /db_xref="CDD:462660"
     misc_feature    466..744
                     /gene="CACYBP"
                     /note="p23_like domain found in proteins similar to
                     Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting
                     protein (SIP). CacyBP/SIP interacts with S100A6
                     (calcyclin), with some other members of the S100 family,
                     with tubulin, and with Siah-1 and Skp-1. The latter...;
                     Region: p23_CacyBP; cd06468"
                     /db_xref="CDD:107225"
     misc_feature    787..>894
                     /gene="CACYBP"
                     /note="SGS domain; Region: SGS; pfam05002"
                     /db_xref="CDD:461514"
ORIGIN      
        1 tctgcaggcg gtgcttgggc ccggggggcg gcctcgaagg actcgcgaag gttctagagg
       61 cgccgcgtgc gggaggtggg ccgagatctc tcgcagggtc gggtgtgccc tcaggccgcg
      121 gccactgtga aaggtgccgg tgctgtctgc gctcgggggt gagcgcggtc agtgcggcgt
      181 ttcctgttct cgcccctgcg ccgctgcagc tggagccttc cctcacgcag cccgagcatg
      241 gcttcaactg tggaggagct acagaaagat ctagaagagg tgaaggtgct gctggaaaaa
      301 gccactagaa aaagagtacg tgatgccctg acagctgaaa aatccaggat tgagacagaa
      361 atcaagaata agatgcagca gaaatcacag aggaaagcag aactcctgga aaacgaaaag
      421 ccagccgctg tggttgctcc tattacaaca ggatatacag tgaaaatcag taattatgga
      481 tgggatcagt cagataagtt tgtgaaaatc tacattacct taactggagt tcatcaagtc
      541 cccgctgaga atgtgcaggt gcatttcaca gagaggtcat ttgatctttt ggtaaagaat
      601 ctaaatggga agagttactc catgattgtg aacaatctct tgaaacccat ctctgtggaa
      661 ggcagttcaa aaaagatcaa gacagataca gttcttatct tatgtaggaa gaaagcagaa
      721 aacacacggt gggactacct gactcaggtt gaaaaagaat gcaaagagaa agaaaagccc
      781 tcctacgaca ctgaaacaga tcctagtgag ggattaatga atgttctaaa gaaaatttat
      841 gaagatggag atgatgatat gaagcgaacc attaataaag cctgggtgga atcaagagag
      901 aagcaagcca aaggagatac agaattctga gactttagtc tttttgggaa ctgtgatgtg
      961 gaaatatcga tgtttccaac gaggacatgt tggtgagctg cacagataca tttgacatat
     1021 aactacttac acagtctaag taaaggcaat gaattctcca tttcctgctg gaggatttat
     1081 ttaaataaaa tatgcttatt aaacaaacaa acactccctc caaagatggt ttccttagta
     1141 accgggtcat tttattcaag aaaagggtaa tgttttctag tgtgaaatgt aaagaaacaa
     1201 gtcttcttac ctaatgaaaa tgccacattg tgtgtattat tgttcagcta agaggtagaa
     1261 acaagttatt gcttgccttt cagttctgac atcagctccc accaatgtaa gaataaaaat
     1321 aaaacgaatt tttgcataaa atgcaaattc atacctgtgt ttcaaggttg ttctagagat
     1381 tgatctattc acagcttaag taatgtatat accatgaatt agcatgccct aataatctaa
     1441 tcacaagtat ttttctctag atttacatat atttatgaat aaattggaac taaatcgaaa
     1501 cttgagaata cacatattta tatagtacca gtaagtgggt ttgccatgga tcagatggct
     1561 tgtaaaaaca ataactgtaa agtaaaatat gaaatccatc tattgtgctg aataaaaacc
     1621 tatcatgta
//
LOCUS       XM_032646841            1468 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus calcyclin binding protein (CACYBP),
            transcript variant X2, mRNA.
ACCESSION   XM_032646841
VERSION     XM_032646841.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1468
                     /gene="CACYBP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761090"
     CDS             212..769
                     /gene="CACYBP"
                     /codon_start=1
                     /product="calcyclin-binding protein isoform X2"
                     /protein_id="XP_032502732.1"
                     /db_xref="GeneID:116761090"
                     /translation="MQQKSQRKAELLENEKPAAVVAPITTGYTVKISNYGWDQSDKFV
                     KIYITLTGVHQVPAENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKI
                     KTDTVLILCRKKAENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGD
                     DDMKRTINKAWVESREKQAKGDTEF"
     misc_feature    <212..307
                     /gene="CACYBP"
                     /note="Siah interacting protein, N terminal; Region:
                     Siah-Interact_N; pfam09032"
                     /db_xref="CDD:462660"
     misc_feature    305..583
                     /gene="CACYBP"
                     /note="p23_like domain found in proteins similar to
                     Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting
                     protein (SIP). CacyBP/SIP interacts with S100A6
                     (calcyclin), with some other members of the S100 family,
                     with tubulin, and with Siah-1 and Skp-1. The latter...;
                     Region: p23_CacyBP; cd06468"
                     /db_xref="CDD:107225"
     misc_feature    626..>733
                     /gene="CACYBP"
                     /note="SGS domain; Region: SGS; pfam05002"
                     /db_xref="CDD:461514"
ORIGIN      
        1 attactaggg gtaggaagat cagtgaggac gcatcactga cggaaagtag agtattactt
       61 cagtcaagtt gctgtagcat ttcaccacac ttaccatcta cagaaagatc tagaagaggt
      121 gaaggtgctg ctggaaaaag ccactagaaa aagagtacgt gatgccctga cagctgaaaa
      181 atccaggatt gagacagaaa tcaagaataa gatgcagcag aaatcacaga ggaaagcaga
      241 actcctggaa aacgaaaagc cagccgctgt ggttgctcct attacaacag gatatacagt
      301 gaaaatcagt aattatggat gggatcagtc agataagttt gtgaaaatct acattacctt
      361 aactggagtt catcaagtcc ccgctgagaa tgtgcaggtg catttcacag agaggtcatt
      421 tgatcttttg gtaaagaatc taaatgggaa gagttactcc atgattgtga acaatctctt
      481 gaaacccatc tctgtggaag gcagttcaaa aaagatcaag acagatacag ttcttatctt
      541 atgtaggaag aaagcagaaa acacacggtg ggactacctg actcaggttg aaaaagaatg
      601 caaagagaaa gaaaagccct cctacgacac tgaaacagat cctagtgagg gattaatgaa
      661 tgttctaaag aaaatttatg aagatggaga tgatgatatg aagcgaacca ttaataaagc
      721 ctgggtggaa tcaagagaga agcaagccaa aggagataca gaattctgag actttagtct
      781 ttttgggaac tgtgatgtgg aaatatcgat gtttccaacg aggacatgtt ggtgagctgc
      841 acagatacat ttgacatata actacttaca cagtctaagt aaaggcaatg aattctccat
      901 ttcctgctgg aggatttatt taaataaaat atgcttatta aacaaacaaa cactccctcc
      961 aaagatggtt tccttagtaa ccgggtcatt ttattcaaga aaagggtaat gttttctagt
     1021 gtgaaatgta aagaaacaag tcttcttacc taatgaaaat gccacattgt gtgtattatt
     1081 gttcagctaa gaggtagaaa caagttattg cttgcctttc agttctgaca tcagctccca
     1141 ccaatgtaag aataaaaata aaacgaattt ttgcataaaa tgcaaattca tacctgtgtt
     1201 tcaaggttgt tctagagatt gatctattca cagcttaagt aatgtatata ccatgaatta
     1261 gcatgcccta ataatctaat cacaagtatt tttctctaga tttacatata tttatgaata
     1321 aattggaact aaatcgaaac ttgagaatac acatatttat atagtaccag taagtgggtt
     1381 tgccatggat cagatggctt gtaaaaacaa taactgtaaa gtaaaatatg aaatccatct
     1441 attgtgctga ataaaaacct atcatgta
//
LOCUS       XM_032646854             745 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein S14
            (MRPS14), mRNA.
ACCESSION   XM_032646854
VERSION     XM_032646854.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..745
                     /gene="MRPS14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761096"
     CDS             88..474
                     /gene="MRPS14"
                     /codon_start=1
                     /product="28S ribosomal protein S14, mitochondrial"
                     /protein_id="XP_032502745.1"
                     /db_xref="GeneID:116761096"
                     /translation="MAASTLGSLLRTVRQVVPSSASGQVRSYYVDWKMLRDVKRRKMA
                     YEYADERLRINSLRKNTILPKDLQEVADEEIAALPRDSCPVRIRNRCVMTSRPRGVKR
                     RWRLSRIVFRHLADHGQLSGVQRAMW"
     misc_feature    193..471
                     /gene="MRPS14"
                     /note="30S ribosomal protein S14; Reviewed; Region: rpsN;
                     cl00355"
                     /db_xref="CDD:469739"
ORIGIN      
        1 ctgcggccca ggtcccgccc ctcgtgtcct cgctgtatcc ggcagcgtta ataaagttgc
       61 agcagtttga catttgcggc ggacaacatg gcggcctcca cgctcggctc tctgctgcgg
      121 acagtccggc aggtggttcc ttcatcagct tcaggccaag ttcgaagtta ctatgtagat
      181 tggaaaatgt tgcgtgatgt gaagagaaga aaaatggcct atgagtatgc agatgagagg
      241 cttcggatca attctctcag gaagaatacc attctgccaa aagaccttca ggaagtggct
      301 gatgaagaaa ttgctgccct tccccgggat agctgtcccg ttagaatcag aaatcggtgt
      361 gttatgacat cccgtccacg aggtgtaaag cggcgctgga ggcttagtcg tatcgtcttc
      421 cgtcacttag ccgaccatgg gcaactgtct ggggtgcagc gagcaatgtg gtaataatca
      481 gctccagaac ctactgagct tacaggaaaa ccagttctgg caagaagaga cttctctaat
      541 agacaaaaac ctagttttta tgggggtcca gaataaaggt cttctctacc tgatgctatc
      601 tatagttaaa ttacttataa attttaaatg aaaaaatttg gaagtttcat tctgtcagtg
      661 aattctcttt tctcctggac ttaataaatt actgtcccca agcatagtgt gaagagtaga
      721 gtaataaaaa atatttctgt ggaaa
//
LOCUS       XM_032646869            5639 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorting nexin 27 (SNX27), mRNA.
ACCESSION   XM_032646869
VERSION     XM_032646869.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5639
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5639
                     /gene="SNX27"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 13 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761101"
     CDS             191..1825
                     /gene="SNX27"
                     /codon_start=1
                     /product="sorting nexin-27"
                     /protein_id="XP_032502760.1"
                     /db_xref="GeneID:116761101"
                     /translation="MADEDGEGIHPSAPHRNGGGGGGGGGGGSGLHCAGNGGGGGGGP
                     RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD
                     RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDY
                     TEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFT
                     FPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVS
                     DVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRK
                     LAPNEFPHKLYVQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVK
                     KGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAIS
                     ITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTP
                     YFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT"
     misc_feature    323..601
                     /gene="SNX27"
                     /note="PDZ domain of sorting nexin-27 (SNX27), and related
                     domains; Region: PDZ_SNX27-like; cd23070"
                     /db_xref="CDD:467283"
     misc_feature    order(353..373,443..445,452..454,539..541,551..553,
                     560..565)
                     /gene="SNX27"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467283"
     misc_feature    677..994
                     /gene="SNX27"
                     /note="The phosphoinositide binding Phox Homology domain
                     of Sorting Nexin 27; Region: PX_SNX27; cd06886"
                     /db_xref="CDD:132796"
     misc_feature    order(785..793,860..865,902..904)
                     /gene="SNX27"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:132796"
     misc_feature    1016..1294
                     /gene="SNX27"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in sorting nexin protein 27
                     (SNX27); Region: FERM_F1_SNX27; cd01777"
                     /db_xref="CDD:340475"
     misc_feature    1472..1777
                     /gene="SNX27"
                     /note="Atypical FERM-like domain C-lobe of Sorting nexin
                     27; Region: FERM-like_C_SNX27; cd13338"
                     /db_xref="CDD:270146"
ORIGIN      
        1 taaaccgtcc tctttccccc cgccccctgt ctccccttta cccgcgcctg cagctccgtg
       61 gccgagtcgg gtcccgccgt cggcggagcg ggcgcgcgcg ccgggggtcg cgcggctgct
      121 gagaaggccg agcacgcgcg gagggagtgg aggcgtaggg tggtgggagt acggcttgct
      181 cgctcgcaag atggcggatg aggacgggga agggattcac ccctcagccc ctcacaggaa
      241 cggaggtggc ggcggcggcg gcggcggtgg ggggtctggg ctccactgcg ccgggaacgg
      301 cggcggggga ggcggcggcc cgcgggttgt gcgcatcgtc aagtccgagt ccggctacgg
      361 cttcaacgtg cggggccaag tgagcgaggg cgggcaactg cggagcatca acggggagct
      421 gtacgcgccg ctgcagcatg tgagcgccgt gctgcccggg ggggcggccg accgggccgg
      481 ggtgcgcaag ggggaccgca ttctggaggt gaacggcgtg aatgttgagg gggcgacaca
      541 caagcaggtg gtggacctga tccgagcagg cgagaaggaa ttgatcttga cagtgttatc
      601 ggtacctcct catgaggcag ataacctaga tcccagtgac gactcgttgg gacagtcatt
      661 ttatgattac acagaaaagc aagcagtgcc catatcggtc cccacataca aacatgtgga
      721 gcagaatggt gagaagtttg tggtatacaa tgtttacatg gcagggaggc agttgtgttc
      781 taagcggtac cgggaatttg ccatcctaca ccagaacctg aagagagagt ttgccaactt
      841 tacatttccc cgacttccag ggaagtggcc attctcttta tcagaacagc aattagatgc
      901 ccgacgtcga gggttggaag aatatctaga aaaagtgtgc tcaatacgag tcattggtga
      961 gagtgacatc atgcaggaat tcctatcaga atcagatgag aactacaatg gtgtgtctga
     1021 cgtagagctg agagtagcat taccagatgg aacaacagtt acagtcaggg ttaaaaagaa
     1081 cagtactaca gaccaagtat atcaggctat tgcagcaaag gttggcatgg acagtacgac
     1141 agtgaattac tttgccttat ttgaagtgat caatcattcc tttgtacgta agctggcacc
     1201 taatgaattt cctcataaac tctacgtcca gaattacaca tcagctgtgc caggcacctg
     1261 cctaaccatt cgaaagtggc tttttacgac agaagaagaa atcctcttaa atgacaatga
     1321 ccttgctgtt acctacttct ttcatcaggc tgttgatgat gtgaaaaaag gttacatcaa
     1381 agcagaggaa aaatcctacc aattacagaa gctgtatgaa caaaggaaaa tggtcatgta
     1441 cctcaacatg ctaaggactt gtgagggcta caatgaaatc atcttccccc actgtgcctg
     1501 cgactccagg agaaaggggc atgttatcac agccatcagc atcacgcact ttaaactgca
     1561 tgcctgcact gaagaaggac agctggagaa ccaggtaata gcatttgaat gggatgagat
     1621 gcaacgatgg gatacagatg aagaaggaat ggccttctgt tttgaatatg ctcgaggaga
     1681 gaagaagcct cgatgggtta aaatcttcac accatatttc aattacatgc atgaatgctt
     1741 cgagagggtg ttctgcgagc tcaagtggag aaaagagaac attttccaga tggcgaggtc
     1801 acagcagaga gatgtggcca cctagccttt cgttaccctc ttcccttctc ttcaccctca
     1861 tcctcttatc cctttcgtct cccatgtcag acagagtaac cattaacacg aaagaagaga
     1921 aaaaggaaaa aagtcattat attcaaaagt cctaaactaa atattattaa taatccctct
     1981 gaatttcata tctctggaat tgagctggta gagaacaaca gatgggtcag caccaggagt
     2041 caactgagtt aagacaggaa aagaaataag cccaaccaac tcgccaaagg tatctttgtc
     2101 ttttcaactg ggcctcatac caacagactc tccttgtact atatttttag aactggaact
     2161 atgaactcca tccatttgca ctgttcaggc atatatatgt atgtatgtaa aaattatata
     2221 tacacaaatt agctgcacgt atatacatat atatatttct ttttaaattt catattgatg
     2281 gcagtacctt ttttagcttg tgtttttaca cacctttcac tagaattcat gacttctctc
     2341 ttgctctctt tattttgaaa caaactttaa aaaggaaaaa aaaaatttac agggaaaaat
     2401 acctctcctc atgaaggact cgaaaagttt acaacctgct tgggtttttc cccccttttt
     2461 tgtattgaat gaagattctg gatcatgggt tgccatagag tctgaggagc aaggagcata
     2521 gtttctttat cttccaagag gctgctgggg aggagaaaga ggtgtgtttc tcaagggcag
     2581 caaggctgca gatctgcagc gagagtctaa agacttggtg tggtctctct tgattccaag
     2641 acaactttcc tggtccatct ctgtctcttc cactcatggc ttttagccac attctacatc
     2701 ttcctgcttc ccgagggccc cctgtatggt ttccctcaac aggcctagaa tgaaggggag
     2761 ggcgggctca ggaggttgac gccacagaca cctgaaacac ttagaggtca tgatttccca
     2821 tttccctgct ctttctgaag cagggatggt acttgggacc agagttaaag ctgatacctt
     2881 taggcacaaa gattggactt aagtaggggg aaggaaagaa gaaagtccct atgaatataa
     2941 gcttgtccct actccattgc tgaccaataa ccacccataa ctattacatt ctctgtgact
     3001 tccttaaacg cccatgttgg ggaaggatct gacagcatcc ccaaggcctt ggggaaactt
     3061 ggaagggtcg gtggcctgtg ccgggcaaac cataccccgt ccaagccagc tgaggaccca
     3121 ggaaggagca gtagtaatat gggtgatttg ggttggatct cagctttgaa ttaaaaggaa
     3181 cctgaaggaa aatctttttg tccctcaaag agctcctcat ctgatcttgc agttagacct
     3241 tttgagacct gagagctaca tcccaggatc tggggccagg gctgactggg gtggagcaac
     3301 attctcaacc cccagcctcc aaaggtactg cattgggagc tctgatacag tcaggctccg
     3361 atgcacctga aacatttttg agccttcttt acttttttcc ttctctacct tctaaacaga
     3421 aacctccata gaatggcatc ttttgctttg tctaactggg aggcagccat agttggttgt
     3481 agtcaactcc actgagcagt gttggggtgg tttgaagttt ctgtttttgt aacttgtttt
     3541 tgcagattgt tgtgaggcca ctttgctctc tgtctcactc tgttgtcttg gcaggcgctt
     3601 gccccacggg gtgtgggatc gtataggaca tcctatcttt cctcaccttc tccaaaccca
     3661 ggtggaatca cagagtgcaa aatgtaggaa agctgaatgt ttaaaattgc agagagtgat
     3721 ccctgatttg gaggctttgg cacagaatta acttcttctg gcttaaatga atttaataat
     3781 gagccaaagg accctggaaa gaaggtatgt tgattgccca ctccaagatg ctgaagaggc
     3841 ttttggcacc agctttgttc aaactttaaa aatagcagtt tgcccctatt cctttagagt
     3901 gggagaggaa tgaacaaatc cgggagtcag tgggaagccc agatgctgac ctgtgatgtg
     3961 agagtagcgg ggatgccttt agcgtgcata gacgctgctc ctgtgtcgtt ctgacctggc
     4021 actcacttgg tgcttggaga ttgggtgagg gccctgtagg tagttagcct gtttagcccc
     4081 tgcttgaggc tgtaccacta acaaagcccc agctacagtg agaaggggag agcagggaag
     4141 ccctggagga cagcgccttc ttctctccca cccacagcag cgtcctgcaa tggaggcaga
     4201 ggtcgctgtg gctgtacagc tccatccagt caagctcttc tttgcacgaa gcagtgttag
     4261 tgtgataccc tttccccctt gctctgcact tcctttcttg aatccctacc acctttctca
     4321 gtccagggtt ctgcccaggg agtcttctgc tcagtctctt tttgcagttt gtctccggga
     4381 aatagtctcc cctttccccc tgctttgccc cagcagagcc agcaggatct ccctgatctc
     4441 ttgttgtcct cccttcccaa cagagagttt ctatccataa aaactcagag tttttatgga
     4501 tcaggagaaa atgcaggccc tgagacacct atccctgcag aaagggttcc cttgggccat
     4561 actttgggtt ttctgctcct tacattttta ttttactctc cctttttctg ccctcccctt
     4621 gccctaggtc taagctcagc acaggcgagt gctcggggca gctcctgggc ctggacagct
     4681 ctcagggagg aattagagaa atgttcagca tccccgtgcc tggcccatcc agtttcatcc
     4741 tttagttacg caggccagta gcttcgggtt atcccttctt atatctccaa acccagtgct
     4801 tggagcagca gctctaacag gaggtgatac ctctctcttt cacttcagaa tttgccagct
     4861 taggggcctg gctcttgaag gcagttttct taaaggggac tgcatcctgg gtgacccgaa
     4921 gtctccagac ctagagggac aactgtgccc tctcttctct gcttcatgtt ctctggctgg
     4981 attgattcag cggtagaaac catttggtct tttgcacccc agcataccgc taggttcctt
     5041 ccagagtcat tgtgtcacat tagcttcctt ttggagggag ggtgatgtgg gtaaatactc
     5101 agatagcaga ggcagtgggt gtgcatcttt agttccccat cttccggttt cacctcctgc
     5161 cctcctcttg ccctaaacct gagcacatca tgccaggcct cactcataca ggatggtgtc
     5221 agctcactcc tcagcagtaa tctagggtgt gtgggaagct taaggctctg gggaagaaca
     5281 gaatcgaaga ggggatgatg tgggtggagg cactggccaa ctaactgcta aacttggaca
     5341 ccagttttat atcacatccc cctttgtaag ccagtgagca gggcttcagt tttccccaga
     5401 ccatgcacac ttttaattta tttgagagaa actctaattg tattttcact gcagtatctt
     5461 gtatttttta tttgtgattt aagaaatgtg aagagaaaat acacagacac ataatggcta
     5521 acagtgtttc tttcattcct tgttctagag ctaaccactc taaaattgtt tggtaatgtc
     5581 acttagtgta attaattgta acatattctt ttaaataaat tgatttattg atgaaacta
//
LOCUS       XM_032646882            1605 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein FAM117A-like (LOC116761108),
            mRNA.
ACCESSION   XM_032646882
VERSION     XM_032646882.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1300              VOSU01000011.1     110949103-110950402 c
            1301-1301           "N"                1-1
            1302-1605           VOSU01000011.1     110948799-110949102 c
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1605
                     /gene="LOC116761108"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 4 Proteins, and 88% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761108"
     CDS             47..1408
                     /gene="LOC116761108"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein FAM117A-like"
                     /protein_id="XP_032502773.1"
                     /db_xref="GeneID:116761108"
                     /translation="MAGAAVGGRGGGAWGPGHGGAGGLRRGCSPPAPAGSPWAGLQPF
                     RATVPFQLQQPHQRRDGGGRAASVPCSVAPEKPVCRPQPPQVRRTFSLDTILSSYLLG
                     QWPRDADGAFTCCTNNKGTQTPLSWQELEGEQASSCTHKHSASWGSTDHQKEITKLKQ
                     QLQRTKLSRSGKEKERGSPLQGDHAVWGALRASPPSFPSGSSVLRLSPCLHRSLEGLN
                     QELEEVFVKEQGEEELLRILEIPDGHRAPAPLQSVSCDHPLLLLEPGNLASSPSMPLA
                     SPQPSGQTGREEHQGAAEELTSNPSDKAFPPGHPAFLEEGSPSPVLAFAASPWPNHSY
                     IFKREPPEDCERLRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLMKPLFP
                     SMGFIFRNCPSSPGSPLPPASPRPLPXKDPEAPKASSLPFEPWQCPPPSEEPALFQSS
                     LVV"
     misc_feature    302..1240
                     /gene="LOC116761108"
                     /note="Protein Family FAM117; Region: FAM117; pfam15388"
                     /db_xref="CDD:464695"
ORIGIN      
        1 ggctcgctgt ggggccgagg caggccagca gtcaggcggg cgggcgatgg cgggggccgc
       61 agtgggcggc agaggcggag gtgcctgggg gccggggcac ggaggggcag ggggcctccg
      121 gcggggctgc tctcccccag cccccgctgg ctccccctgg gctgggctgc agcctttcag
      181 ggccaccgtc cctttccagc tgcagcagcc gcaccagcgc cgggacgggg gtggccgcgc
      241 agccagcgtc ccgtgttccg tggccccaga aaagccagtg tgtaggcctc agccacccca
      301 ggtccggcgt acattctccc tggacaccat cctcagctcc taccttctgg gccagtggcc
      361 acgagatgct gatggggcct tcacctgctg tactaataac aagggcaccc agacccccct
      421 gtcctggcaa gagcttgaag gtgagcaggc cagctcgtgt acacacaagc actcagcgtc
      481 ctggggcagc acagaccacc aaaaagagat taccaagttg aagcaacagc tgcagaggac
      541 aaagcttagc cgcagtggga aagagaagga gcggggatcc cccctccaag gggaccatgc
      601 tgtgtgggga gcactgaggg cgtcccctcc cagcttcccc tcagggtcct ctgtcctgcg
      661 actgagcccc tgcctgcacc ggagcctgga agggctcaac caagagctgg aggaggtgtt
      721 tgtgaaagag cagggtgagg aggagctgct gcggatcctt gaaatccctg acggacaccg
      781 agccccagct cccctccaga gcgtcagctg tgatcatccc ctcctcctcc tggagcctgg
      841 aaaccttgcc agctctccct ccatgcccct ggcatccccc cagccttctg gccagactgg
      901 ccgtgaggaa caccagggtg cagccgagga gctgacgtcc aaccccagtg acaaagcttt
      961 ccctccaggc cacccagcct tccttgaaga gggcagccca tctccagtcc ttgcctttgc
     1021 cgcctcccct tggcccaatc acagctacat cttcaaacgg gaacccccgg aagactgtga
     1081 gagactgcgg gtgtttgaag aggccacgtc cccaggtcct gacttggcct tcctgacttc
     1141 ctgtcctgac aagaacaaag tccatttcaa cccaaccggc tcggctttct gccccgtcag
     1201 cttgatgaag cccctcttcc ccagcatggg cttcatcttc cgtaactgcc cctcaagccc
     1261 ggggtccccc cttcccccgg ccagccccag gccactgcct ncgaaggatc cagaggcccc
     1321 caaggcctcc tcgctgccat tcgagccttg gcagtgcccc ccaccgtcag aagagcctgc
     1381 gcttttccag agctccctgg tggtctgagg gccccacccc cacttcacca tggagaccag
     1441 tgccttggtg gcaggcccct cccgagctcc cctgagatgg gggatgaagg agcccttccc
     1501 tcctggcctt tgagcacttt catttattgt gtcaaagccc tgggtcctct ttccgatgga
     1561 cctctgcccc ttcgaatgtg aggggacctg cctcctccac tagaa
//
LOCUS       XM_032646893            2225 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Jun proto-oncogene, AP-1 transcription
            factor subunit (JUN), mRNA.
ACCESSION   XM_032646893
VERSION     XM_032646893.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2225
                     /gene="JUN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 8 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761115"
     CDS             31..1071
                     /gene="JUN"
                     /codon_start=1
                     /product="transcription factor AP-1"
                     /protein_id="XP_032502784.1"
                     /db_xref="GeneID:116761115"
                     /translation="MTAKMETTFYDDALNASFLQSESGAYGYSNPKILKQSMTLNLAD
                     PVGSLKPHLRAKNSDLLTSPDVGLLKLASPELERLIIQSSNGHITTTPTPTQFLCPKN
                     VTDEQEGFAEGFVRALAELHSQNTLPSVTSAAQPVSGAGLVAPAVASVAGGGGGGGGG
                     GGFGASLHSEPPVYANLSNFNPGALSGGGGGGGGAPSYGAAGLAFPAQPQQQQPPPPP
                     PPPPPHHLPQQIPVQHPRLQALKEEPQTVPEMPGETPPLSPIDMESQERIKAERKRMR
                     NRIAASKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNHVNSG
                     CQLMLTQQLQTF"
     misc_feature    46..795
                     /gene="JUN"
                     /note="Jun-like transcription factor; Region: Jun;
                     pfam03957"
                     /db_xref="CDD:461108"
     misc_feature    835..1017
                     /gene="JUN"
                     /note="Basic leucine zipper (bZIP) domain of Jun proteins
                     and similar proteins: a DNA-binding and dimerization
                     domain; Region: bZIP_Jun; cd14696"
                     /db_xref="CDD:269844"
     misc_feature    838..993
                     /gene="JUN"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269844"
     misc_feature    order(850..852,856..864,868..885,889..897)
                     /gene="JUN"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269844"
     misc_feature    order(892..897,901..906,910..918,922..927,934..939,
                     943..948,952..960,964..969,976..981,988..990,997..999,
                     1006..1017)
                     /gene="JUN"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269844"
ORIGIN      
        1 ctaaccccac gtgaagtgac agactgttct atgactgcaa agatggaaac gaccttctac
       61 gacgatgccc tcaacgcctc gttcctccag tccgagagcg gcgcctacgg ctacagtaac
      121 cccaagatcc tgaagcagag catgaccctg aacctggccg accccgtggg gagcctgaag
      181 ccgcacctcc gggccaagaa ctccgacctc ctcacctcgc ccgacgtggg gctgctcaag
      241 ctggcgtcgc ccgagctgga gcgcctgata atccagtcca gcaacgggca catcaccacc
      301 acgccgaccc ccacccagtt cctgtgtccc aagaacgtga cggacgagca ggagggcttc
      361 gccgagggct tcgtgcgcgc cctggccgaa ctgcacagcc agaacacgct gcccagcgtc
      421 acgtcggcgg cgcagccagt cagcggggcg ggcctggtgg ccccggccgt ggcctcggtg
      481 gcgggcggcg gcggtggcgg cggtggcggc ggcggcttcg gcgccagcct gcacagcgag
      541 ccgccggtct acgccaacct cagcaacttc aacccgggcg cgctgagcgg tggcggcggc
      601 ggcggcggcg gggcgccctc ctacggcgcg gccggcctgg cttttcccgc gcagcctcag
      661 cagcagcagc cgccgccgcc gccgccgccg ccgccgccgc accacctgcc ccagcagatc
      721 cccgtgcagc acccgcggct gcaggccctg aaggaggagc cgcagacggt ccccgagatg
      781 cccggggaaa cgccgcccct gtcccccatc gacatggagt cccaggagcg gatcaaggcg
      841 gagaggaagc gcatgaggaa ccgcatcgct gcctccaagt gccggaaaag gaagctggag
      901 aggatcgccc gactggagga aaaagtgaaa accttgaaag cgcagaactc ggagctggcg
      961 tccacggcca acatgctcag ggaacaggtg gcccagctta agcagaaagt catgaaccac
     1021 gttaacagtg ggtgccaact catgctaacg cagcagttgc aaacgttttg aggcgagact
     1081 gtcgggggct gaggggcaac ggagaacaaa taacccagag agggacggac ttgagaactt
     1141 gacaagttgc gagagaggga gaaagagaga aaaaagaagt gtccgagaac taaagccaag
     1201 ggtttccaag ttggactggg ttgcgtcctg acggcgcccc cagtgtgcac gagagagaag
     1261 gacttggcgc gccctccctt tggcagggag ccagggagcg gccgcccgcg ggctgccccg
     1321 ctttaaggtc gggctgtccc cgcgcaaaca gaacgttaga cttttcttta acattgacca
     1381 agaactgcat ggacctaaca ttcgatctca ttcagtatta aaggggggag ggaggggtcg
     1441 caaactgcaa tagagactgt agattgcttc tgtagtgctc cttaagaaca caaagggggt
     1501 ggggggggga ggcgggaggg aggtttgcga gagcgaggcc cagtctgcag atgaactcct
     1561 tctggactgc cttccataac tgtgtatgta catgtatata ttttttaatt tgatgaaagc
     1621 tgattactgt caataaacag cttcacgcct ttgtaagtta tttcatgttt gtttgtttgg
     1681 gtgtcctgcc cagcgttgtt tgtaaataag agatttggag cactctgagt ttaccatttg
     1741 taataaagta tataattttt ttatgttttg tttctgaaaa ttccagaaag gatatttaag
     1801 aaaatacaat aaaatattga aaaagtgacc cctcccccaa cctcttttct gcattacctg
     1861 tagattactt tgccaggtgg agctgaaaga gttaagagtg tccattaaaa tcactctcag
     1921 tgcttcttac tatcaagcag tgaaaactgt tacctactgg agttaagaga taactgtagc
     1981 tgattccctc atcaagttat actctttcct cccaacaagc tatacagagt ggcttacaaa
     2041 ggataatgtg gcatttcagg aggctgaggg aagggaggtt gtggtggaga ggggcagctc
     2101 cctgggaagt caaacgtttt aaagtttgga tcatatcaag tggcatgtgc tgtgaccatt
     2161 tataatgtta gtagaaattt taacaataga tgcttattct caaagcagga acagtggcag
     2221 atttt
//
LOCUS       XM_032646903            3210 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc fragment of IgM receptor (FCMR),
            transcript variant X1, mRNA.
ACCESSION   XM_032646903
VERSION     XM_032646903.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3210
                     /gene="FCMR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761123"
     CDS             137..1465
                     /gene="FCMR"
                     /codon_start=1
                     /product="fas apoptotic inhibitory molecule 3 isoform X1"
                     /protein_id="XP_032502794.1"
                     /db_xref="GeneID:116761123"
                     /translation="MDLWLWSLYFLPVAGALRVVPEVKVEGMLGGSVVIECPLPEMHV
                     RIYLCRTIVASGGCTTVVSNRNFVKKEFKNRVTLELCPDRNLFLVEMTELVESDSGVY
                     ACGAGMDTDRGKTQQVTLSVHSGLSLVLETTNGLLLPPVDYGPFWEEEPLPEPPAWFN
                     RFLQMHMPLWFQMPEHASSLEFISKVTTPAQRTEAPPAHHASPTTSITHRPRVYRASS
                     VATAQPTTLLPSATASKTSAQEELLRLQTASYNRQTRLHRQSSLNHGPGPVSGMEDQG
                     FYILTPTILGLILLALLGLVAKRVIQRRKALSRRVRRLAVRMRALEASQRPLSQRPRV
                     SQRPRVSQRPRTQNNVYSACPRRPRGVDAAGEGAAPLPGPGALAPPAPPQVSETPWLH
                     APAVKISCEYVSFYHQPAAKMEDTHSDDYVNIPCLTQLSSCPPGPRPWCQ"
     misc_feature    188..499
                     /gene="FCMR"
                     /note="Immunoglobulin (Ig)-like domain in the polymeric Ig
                     receptor (pIgR) and similar proteins; Region:
                     IgV_pIgR_like; cd05716"
                     /db_xref="CDD:409381"
     misc_feature    188..247
                     /gene="FCMR"
                     /note="FR1 [structural motif]; Region: FR1"
                     /db_xref="CDD:409381"
     misc_feature    188..196
                     /gene="FCMR"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409381"
     misc_feature    203..223
                     /gene="FCMR"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409381"
     misc_feature    227..250
                     /gene="FCMR"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409381"
     misc_feature    248..268
                     /gene="FCMR"
                     /note="CDR1 [structural motif]; Region: CDR1"
                     /db_xref="CDD:409381"
     misc_feature    266..283
                     /gene="FCMR"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409381"
     misc_feature    266..274
                     /gene="FCMR"
                     /note="CDR1-dIgA binding residues [polypeptide binding];
                     other site"
                     /db_xref="CDD:409381"
     misc_feature    269..283
                     /gene="FCMR"
                     /note="FR2 [structural motif]; Region: FR2"
                     /db_xref="CDD:409381"
     misc_feature    284..343
                     /gene="FCMR"
                     /note="CDR2 [structural motif]; Region: CDR2"
                     /db_xref="CDD:409381"
     misc_feature    311..325
                     /gene="FCMR"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409381"
     misc_feature    335..343
                     /gene="FCMR"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409381"
     misc_feature    359..454
                     /gene="FCMR"
                     /note="FR3 [structural motif]; Region: FR3"
                     /db_xref="CDD:409381"
     misc_feature    359..379
                     /gene="FCMR"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409381"
     misc_feature    389..415
                     /gene="FCMR"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409381"
     misc_feature    431..454
                     /gene="FCMR"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409381"
     misc_feature    455..481
                     /gene="FCMR"
                     /note="CDR3 [structural motif]; Region: CDR3"
                     /db_xref="CDD:409381"
     misc_feature    479..499
                     /gene="FCMR"
                     /note="FR4 [structural motif]; Region: FR4"
                     /db_xref="CDD:409381"
     misc_feature    479..499
                     /gene="FCMR"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409381"
ORIGIN      
        1 cattttcaag ccgtacgcct tgtgggggcc agaaatctct ttcaagcatc aaacactgaa
       61 gggctcctgg gtgagcagtg ggtctctgtc cccctctcca ggagctcttg gatgggacct
      121 tggtctggaa ggagccatgg acctctggct ttggtcactt tacttcctgc cagtagctgg
      181 agccctgagg gtcgttccag aagtaaaggt ggagggaatg ctgggaggat ccgttgtcat
      241 cgagtgcccg cttcctgaaa tgcatgtgag gatatatctg tgccggacaa ttgttgcgtc
      301 tggaggatgc accaccgtgg tgtccaacag gaacttcgtc aagaaggaat tcaagaatcg
      361 agtcacactg gagctgtgtc cagacaggaa tctgttcctg gtggagatga cagagctggt
      421 cgagagtgac agcggggtct atgcctgtgg ggcaggcatg gacacagacc ggggcaagac
      481 ccagcaggtc accctgtctg ttcacagtgg cctcagtctc gtcctagaga ccaccaatgg
      541 actcctcttg cctccggtag attacgggcc tttctgggaa gaagagccac tgcctgagcc
      601 tccagcatgg tttaacagat ttctccaaat gcacatgcct ctttggttcc agatgcctga
      661 acatgccagc tctttggaat tcatatccaa agtaaccaca ccagctcaaa ggaccgaggc
      721 ccctccagca caccatgcct cccccaccac ctcaatcacc caccgccctc gagtttacag
      781 ggcatcttca gtagcaactg cccagcccac caccctcctg ccatctgcca cagcctcaaa
      841 aacctcagca caggaggaac tgctcaggct ccagacggcc agctacaacc gccaaaccag
      901 gcttcacagg cagagttcac tcaaccacgg cccaggcccc gtgtctggga tggaagatca
      961 aggcttctac atcctgaccc ccaccatcct gggtctcatc ctgctggcac ttctggggct
     1021 ggtggcgaag agggtcattc aaaggaggaa agctctctcc agacgggtcc gccgactggc
     1081 cgtgaggatg cgcgccctgg aggcctcaca gcggcccctg tcacagcggc cacgcgtgtc
     1141 acagcggcca cgcgtgtcgc agcggccacg cacccaaaac aacgtataca gcgcctgccc
     1201 tcggcgccct cggggggtgg acgctgctgg tgaaggggcg gcacctctcc caggccccgg
     1261 agcattggcg cccccagccc cgccgcaggt gtcggaaact ccctggctcc atgccccagc
     1321 tgtgaagatc agctgtgaat atgtgagctt ctaccaccag cctgctgcca agatggagga
     1381 cacgcattcc gatgactacg tcaatattcc ctgcctgact cagctctcca gctgtccccc
     1441 tgggcccaga ccttggtgcc aatgagtctc gtctctctgc tggtttccaa cacccgctcc
     1501 atccgttttc agaaccctca ttactcccac gtcccacctc gagtctcatc cctgtcttgt
     1561 ttgccctgag cactgctcag tcccccctcc cccagttctt cctggacact tttgcagccc
     1621 cctgtggttt tcaggtgggc tccgggaatg cagagcattt gtcctgatgc cacttgcttc
     1681 ctttccaagc catgcaacag gctgtgggat ttgcagagtg tctttgatca catggtcttt
     1741 gctgccctgg atctagacca catggccttg gactggagcc taggcatagc tgttgctttg
     1801 aaagcccttc tcggtcttgg gtttcccacc agtagaaggt gcctgaactt ctttgtgagg
     1861 acatgcttca gccctgagct aggaagggac cttgttatga aacacccctt acaacctctt
     1921 tgcccagatc ttagggctgg catttactag tgatcttcta tttgtctgga gtcctatggt
     1981 ctggagtcct ctgagggcaa tttattttga tgtgatgaag ggttgtaaat tttcagaacc
     2041 atgcttgtta gtgctggtga tatatgtgga taccctcttt actctaagtc ttcctccctt
     2101 gatgcaccta agtaccctga ctccagcatt cgccctcttt cagaaataga atagtttttg
     2161 tcatctattt atccttcttc catgcactga aatgtgtgca cttatcttaa ccttggtcta
     2221 tttgagctat ccaaagccat tacatctctc tgctttcaga aatgcacctc ttctctttgc
     2281 cagtcctggt ggcttatagc caggtggggt agaacaagga tatgggattc ctggaaggcc
     2341 agttgttctg caagagaact cacgtcatgg aagaagagac atcccacctc ctacgtacat
     2401 tcatcctctt gagtgttctg tacaagggca gagttaggca gacattatgt gtttggattg
     2461 caatcaacta caaagttcag tcaaagcttg aggctagaga atgtcccgtc ttgcttttag
     2521 gaagaaggcc tttcccagac acacaactca gcttctctgg gcactggtcc agtgatagaa
     2581 aggaaaggtt cccgaggtgc ctgcttttga tgagcaggga atgtcatcac agatgggata
     2641 acacataacc ctaaccctaa cctaacccta aattatattc gcaccaccat cacacctgtc
     2701 atccaggtat gatggcacca tccacgaggt cagcttgacg ctggcaccct cccaagtggc
     2761 agataaggga cgagtgagta ggataagaga gagagtaccc aaggggcagg gatggtggga
     2821 gtgaggtggg gagtgtgggc aagaaatgca gtgtttaggg agagtctgct ttgttctggg
     2881 cacccccctg cattatatct tttatcattt atatttcaaa ccagtgccct caccctcgtc
     2941 ccagtgctct gcgtatgacc cctgcaggtg tcatgacaat gtgatttcca tgccctaaag
     3001 ttcaacttca catcccaaca tccctcattg ttcctcaaca attcaaagac aggtttaaaa
     3061 aaatccaatt aagcatttac tgagcaccca tcctctaccc cacgtggtgg caaagattgt
     3121 ggaggatcag agagaagcat ggggcactgt ctttgctgcc ttcacagaac tttcattctg
     3181 acaaataaat aaggcatcgg ttaaaacact
//
LOCUS       XM_032646911            3209 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc fragment of IgM receptor (FCMR),
            transcript variant X2, mRNA.
ACCESSION   XM_032646911
VERSION     XM_032646911.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3209
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3209
                     /gene="FCMR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761123"
     CDS             139..1464
                     /gene="FCMR"
                     /codon_start=1
                     /product="fas apoptotic inhibitory molecule 3 isoform X2"
                     /protein_id="XP_032502802.1"
                     /db_xref="GeneID:116761123"
                     /translation="MDLWLWSLYFLPAGALRVVPEVKVEGMLGGSVVIECPLPEMHVR
                     IYLCRTIVASGGCTTVVSNRNFVKKEFKNRVTLELCPDRNLFLVEMTELVESDSGVYA
                     CGAGMDTDRGKTQQVTLSVHSGLSLVLETTNGLLLPPVDYGPFWEEEPLPEPPAWFNR
                     FLQMHMPLWFQMPEHASSLEFISKVTTPAQRTEAPPAHHASPTTSITHRPRVYRASSV
                     ATAQPTTLLPSATASKTSAQEELLRLQTASYNRQTRLHRQSSLNHGPGPVSGMEDQGF
                     YILTPTILGLILLALLGLVAKRVIQRRKALSRRVRRLAVRMRALEASQRPLSQRPRVS
                     QRPRVSQRPRTQNNVYSACPRRPRGVDAAGEGAAPLPGPGALAPPAPPQVSETPWLHA
                     PAVKISCEYVSFYHQPAAKMEDTHSDDYVNIPCLTQLSSCPPGPRPWCQ"
     misc_feature    187..498
                     /gene="FCMR"
                     /note="Immunoglobulin (Ig)-like domain in the polymeric Ig
                     receptor (pIgR) and similar proteins; Region:
                     IgV_pIgR_like; cd05716"
                     /db_xref="CDD:409381"
     misc_feature    187..246
                     /gene="FCMR"
                     /note="FR1 [structural motif]; Region: FR1"
                     /db_xref="CDD:409381"
     misc_feature    187..195
                     /gene="FCMR"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409381"
     misc_feature    202..222
                     /gene="FCMR"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409381"
     misc_feature    226..249
                     /gene="FCMR"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409381"
     misc_feature    247..267
                     /gene="FCMR"
                     /note="CDR1 [structural motif]; Region: CDR1"
                     /db_xref="CDD:409381"
     misc_feature    265..282
                     /gene="FCMR"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409381"
     misc_feature    265..273
                     /gene="FCMR"
                     /note="CDR1-dIgA binding residues [polypeptide binding];
                     other site"
                     /db_xref="CDD:409381"
     misc_feature    268..282
                     /gene="FCMR"
                     /note="FR2 [structural motif]; Region: FR2"
                     /db_xref="CDD:409381"
     misc_feature    283..342
                     /gene="FCMR"
                     /note="CDR2 [structural motif]; Region: CDR2"
                     /db_xref="CDD:409381"
     misc_feature    310..324
                     /gene="FCMR"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409381"
     misc_feature    334..342
                     /gene="FCMR"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409381"
     misc_feature    358..453
                     /gene="FCMR"
                     /note="FR3 [structural motif]; Region: FR3"
                     /db_xref="CDD:409381"
     misc_feature    358..378
                     /gene="FCMR"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409381"
     misc_feature    388..414
                     /gene="FCMR"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409381"
     misc_feature    430..453
                     /gene="FCMR"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409381"
     misc_feature    454..480
                     /gene="FCMR"
                     /note="CDR3 [structural motif]; Region: CDR3"
                     /db_xref="CDD:409381"
     misc_feature    478..498
                     /gene="FCMR"
                     /note="FR4 [structural motif]; Region: FR4"
                     /db_xref="CDD:409381"
     misc_feature    478..498
                     /gene="FCMR"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409381"
ORIGIN      
        1 ctcattttca agccgtacgc cttgtggggg ccagaaatct ctttcaagca tcaaacactg
       61 aagggctcct gggtgagcag tgggtctctg tccccctctc caggagctct tggatgggac
      121 cttggtctgg aaggagccat ggacctctgg ctttggtcac tttacttcct gccagctgga
      181 gccctgaggg tcgttccaga agtaaaggtg gagggaatgc tgggaggatc cgttgtcatc
      241 gagtgcccgc ttcctgaaat gcatgtgagg atatatctgt gccggacaat tgttgcgtct
      301 ggaggatgca ccaccgtggt gtccaacagg aacttcgtca agaaggaatt caagaatcga
      361 gtcacactgg agctgtgtcc agacaggaat ctgttcctgg tggagatgac agagctggtc
      421 gagagtgaca gcggggtcta tgcctgtggg gcaggcatgg acacagaccg gggcaagacc
      481 cagcaggtca ccctgtctgt tcacagtggc ctcagtctcg tcctagagac caccaatgga
      541 ctcctcttgc ctccggtaga ttacgggcct ttctgggaag aagagccact gcctgagcct
      601 ccagcatggt ttaacagatt tctccaaatg cacatgcctc tttggttcca gatgcctgaa
      661 catgccagct ctttggaatt catatccaaa gtaaccacac cagctcaaag gaccgaggcc
      721 cctccagcac accatgcctc ccccaccacc tcaatcaccc accgccctcg agtttacagg
      781 gcatcttcag tagcaactgc ccagcccacc accctcctgc catctgccac agcctcaaaa
      841 acctcagcac aggaggaact gctcaggctc cagacggcca gctacaaccg ccaaaccagg
      901 cttcacaggc agagttcact caaccacggc ccaggccccg tgtctgggat ggaagatcaa
      961 ggcttctaca tcctgacccc caccatcctg ggtctcatcc tgctggcact tctggggctg
     1021 gtggcgaaga gggtcattca aaggaggaaa gctctctcca gacgggtccg ccgactggcc
     1081 gtgaggatgc gcgccctgga ggcctcacag cggcccctgt cacagcggcc acgcgtgtca
     1141 cagcggccac gcgtgtcgca gcggccacgc acccaaaaca acgtatacag cgcctgccct
     1201 cggcgccctc ggggggtgga cgctgctggt gaaggggcgg cacctctccc aggccccgga
     1261 gcattggcgc ccccagcccc gccgcaggtg tcggaaactc cctggctcca tgccccagct
     1321 gtgaagatca gctgtgaata tgtgagcttc taccaccagc ctgctgccaa gatggaggac
     1381 acgcattccg atgactacgt caatattccc tgcctgactc agctctccag ctgtccccct
     1441 gggcccagac cttggtgcca atgagtctcg tctctctgct ggtttccaac acccgctcca
     1501 tccgttttca gaaccctcat tactcccacg tcccacctcg agtctcatcc ctgtcttgtt
     1561 tgccctgagc actgctcagt cccccctccc ccagttcttc ctggacactt ttgcagcccc
     1621 ctgtggtttt caggtgggct ccgggaatgc agagcatttg tcctgatgcc acttgcttcc
     1681 tttccaagcc atgcaacagg ctgtgggatt tgcagagtgt ctttgatcac atggtctttg
     1741 ctgccctgga tctagaccac atggccttgg actggagcct aggcatagct gttgctttga
     1801 aagcccttct cggtcttggg tttcccacca gtagaaggtg cctgaacttc tttgtgagga
     1861 catgcttcag ccctgagcta ggaagggacc ttgttatgaa acacccctta caacctcttt
     1921 gcccagatct tagggctggc atttactagt gatcttctat ttgtctggag tcctatggtc
     1981 tggagtcctc tgagggcaat ttattttgat gtgatgaagg gttgtaaatt ttcagaacca
     2041 tgcttgttag tgctggtgat atatgtggat accctcttta ctctaagtct tcctcccttg
     2101 atgcacctaa gtaccctgac tccagcattc gccctctttc agaaatagaa tagtttttgt
     2161 catctattta tccttcttcc atgcactgaa atgtgtgcac ttatcttaac cttggtctat
     2221 ttgagctatc caaagccatt acatctctct gctttcagaa atgcacctct tctctttgcc
     2281 agtcctggtg gcttatagcc aggtggggta gaacaaggat atgggattcc tggaaggcca
     2341 gttgttctgc aagagaactc acgtcatgga agaagagaca tcccacctcc tacgtacatt
     2401 catcctcttg agtgttctgt acaagggcag agttaggcag acattatgtg tttggattgc
     2461 aatcaactac aaagttcagt caaagcttga ggctagagaa tgtcccgtct tgcttttagg
     2521 aagaaggcct ttcccagaca cacaactcag cttctctggg cactggtcca gtgatagaaa
     2581 ggaaaggttc ccgaggtgcc tgcttttgat gagcagggaa tgtcatcaca gatgggataa
     2641 cacataaccc taaccctaac ctaaccctaa attatattcg caccaccatc acacctgtca
     2701 tccaggtatg atggcaccat ccacgaggtc agcttgacgc tggcaccctc ccaagtggca
     2761 gataagggac gagtgagtag gataagagag agagtaccca aggggcaggg atggtgggag
     2821 tgaggtgggg agtgtgggca agaaatgcag tgtttaggga gagtctgctt tgttctgggc
     2881 acccccctgc attatatctt ttatcattta tatttcaaac cagtgccctc accctcgtcc
     2941 cagtgctctg cgtatgaccc ctgcaggtgt catgacaatg tgatttccat gccctaaagt
     3001 tcaacttcac atcccaacat ccctcattgt tcctcaacaa ttcaaagaca ggtttaaaaa
     3061 aatccaatta agcatttact gagcacccat cctctacccc acgtggtggc aaagattgtg
     3121 gaggatcaga gagaagcatg gggcactgtc tttgctgcct tcacagaact ttcattctga
     3181 caaataaata aggcatcggt taaaacact
//
LOCUS       XM_032646921            3158 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc fragment of IgM receptor (FCMR),
            transcript variant X3, mRNA.
ACCESSION   XM_032646921
VERSION     XM_032646921.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3158
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3158
                     /gene="FCMR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761123"
     CDS             136..1413
                     /gene="FCMR"
                     /codon_start=1
                     /product="fas apoptotic inhibitory molecule 3 isoform X3"
                     /protein_id="XP_032502812.1"
                     /db_xref="GeneID:116761123"
                     /translation="MDLWLWSLYFLPVAGALRVVPEVKVEGMLGGSVVIECPLPEMHV
                     RIYLCRTIVASGGCTTVVSNRNFVKKEFKNRVTLELCPDRNLFLVEMTELVESDSGVY
                     ACGAGMDTDRGKTQQVTLSVHSDYGPFWEEEPLPEPPAWFNRFLQMHMPLWFQMPEHA
                     SSLEFISKVTTPAQRTEAPPAHHASPTTSITHRPRVYRASSVATAQPTTLLPSATASK
                     TSAQEELLRLQTASYNRQTRLHRQSSLNHGPGPVSGMEDQGFYILTPTILGLILLALL
                     GLVAKRVIQRRKALSRRVRRLAVRMRALEASQRPLSQRPRVSQRPRVSQRPRTQNNVY
                     SACPRRPRGVDAAGEGAAPLPGPGALAPPAPPQVSETPWLHAPAVKISCEYVSFYHQP
                     AAKMEDTHSDDYVNIPCLTQLSSCPPGPRPWCQ"
     misc_feature    187..498
                     /gene="FCMR"
                     /note="Immunoglobulin (Ig)-like domain in the polymeric Ig
                     receptor (pIgR) and similar proteins; Region:
                     IgV_pIgR_like; cd05716"
                     /db_xref="CDD:409381"
     misc_feature    187..246
                     /gene="FCMR"
                     /note="FR1 [structural motif]; Region: FR1"
                     /db_xref="CDD:409381"
     misc_feature    187..195
                     /gene="FCMR"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409381"
     misc_feature    202..222
                     /gene="FCMR"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409381"
     misc_feature    226..249
                     /gene="FCMR"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409381"
     misc_feature    247..267
                     /gene="FCMR"
                     /note="CDR1 [structural motif]; Region: CDR1"
                     /db_xref="CDD:409381"
     misc_feature    265..282
                     /gene="FCMR"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409381"
     misc_feature    265..273
                     /gene="FCMR"
                     /note="CDR1-dIgA binding residues [polypeptide binding];
                     other site"
                     /db_xref="CDD:409381"
     misc_feature    268..282
                     /gene="FCMR"
                     /note="FR2 [structural motif]; Region: FR2"
                     /db_xref="CDD:409381"
     misc_feature    283..342
                     /gene="FCMR"
                     /note="CDR2 [structural motif]; Region: CDR2"
                     /db_xref="CDD:409381"
     misc_feature    310..324
                     /gene="FCMR"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409381"
     misc_feature    334..342
                     /gene="FCMR"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409381"
     misc_feature    358..453
                     /gene="FCMR"
                     /note="FR3 [structural motif]; Region: FR3"
                     /db_xref="CDD:409381"
     misc_feature    358..378
                     /gene="FCMR"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409381"
     misc_feature    388..414
                     /gene="FCMR"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409381"
     misc_feature    430..453
                     /gene="FCMR"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409381"
     misc_feature    454..480
                     /gene="FCMR"
                     /note="CDR3 [structural motif]; Region: CDR3"
                     /db_xref="CDD:409381"
     misc_feature    478..498
                     /gene="FCMR"
                     /note="FR4 [structural motif]; Region: FR4"
                     /db_xref="CDD:409381"
     misc_feature    478..498
                     /gene="FCMR"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409381"
ORIGIN      
        1 attttcaagc cgtacgcctt gtgggggcca gaaatctctt tcaagcatca aacactgaag
       61 ggctcctggg tgagcagtgg gtctctgtcc ccctctccag gagctcttgg atgggacctt
      121 ggtctggaag gagccatgga cctctggctt tggtcacttt acttcctgcc agtagctgga
      181 gccctgaggg tcgttccaga agtaaaggtg gagggaatgc tgggaggatc cgttgtcatc
      241 gagtgcccgc ttcctgaaat gcatgtgagg atatatctgt gccggacaat tgttgcgtct
      301 ggaggatgca ccaccgtggt gtccaacagg aacttcgtca agaaggaatt caagaatcga
      361 gtcacactgg agctgtgtcc agacaggaat ctgttcctgg tggagatgac agagctggtc
      421 gagagtgaca gcggggtcta tgcctgtggg gcaggcatgg acacagaccg gggcaagacc
      481 cagcaggtca ccctgtctgt tcacagtgat tacgggcctt tctgggaaga agagccactg
      541 cctgagcctc cagcatggtt taacagattt ctccaaatgc acatgcctct ttggttccag
      601 atgcctgaac atgccagctc tttggaattc atatccaaag taaccacacc agctcaaagg
      661 accgaggccc ctccagcaca ccatgcctcc cccaccacct caatcaccca ccgccctcga
      721 gtttacaggg catcttcagt agcaactgcc cagcccacca ccctcctgcc atctgccaca
      781 gcctcaaaaa cctcagcaca ggaggaactg ctcaggctcc agacggccag ctacaaccgc
      841 caaaccaggc ttcacaggca gagttcactc aaccacggcc caggccccgt gtctgggatg
      901 gaagatcaag gcttctacat cctgaccccc accatcctgg gtctcatcct gctggcactt
      961 ctggggctgg tggcgaagag ggtcattcaa aggaggaaag ctctctccag acgggtccgc
     1021 cgactggccg tgaggatgcg cgccctggag gcctcacagc ggcccctgtc acagcggcca
     1081 cgcgtgtcac agcggccacg cgtgtcgcag cggccacgca cccaaaacaa cgtatacagc
     1141 gcctgccctc ggcgccctcg gggggtggac gctgctggtg aaggggcggc acctctccca
     1201 ggccccggag cattggcgcc cccagccccg ccgcaggtgt cggaaactcc ctggctccat
     1261 gccccagctg tgaagatcag ctgtgaatat gtgagcttct accaccagcc tgctgccaag
     1321 atggaggaca cgcattccga tgactacgtc aatattccct gcctgactca gctctccagc
     1381 tgtccccctg ggcccagacc ttggtgccaa tgagtctcgt ctctctgctg gtttccaaca
     1441 cccgctccat ccgttttcag aaccctcatt actcccacgt cccacctcga gtctcatccc
     1501 tgtcttgttt gccctgagca ctgctcagtc ccccctcccc cagttcttcc tggacacttt
     1561 tgcagccccc tgtggttttc aggtgggctc cgggaatgca gagcatttgt cctgatgcca
     1621 cttgcttcct ttccaagcca tgcaacaggc tgtgggattt gcagagtgtc tttgatcaca
     1681 tggtctttgc tgccctggat ctagaccaca tggccttgga ctggagccta ggcatagctg
     1741 ttgctttgaa agcccttctc ggtcttgggt ttcccaccag tagaaggtgc ctgaacttct
     1801 ttgtgaggac atgcttcagc cctgagctag gaagggacct tgttatgaaa caccccttac
     1861 aacctctttg cccagatctt agggctggca tttactagtg atcttctatt tgtctggagt
     1921 cctatggtct ggagtcctct gagggcaatt tattttgatg tgatgaaggg ttgtaaattt
     1981 tcagaaccat gcttgttagt gctggtgata tatgtggata ccctctttac tctaagtctt
     2041 cctcccttga tgcacctaag taccctgact ccagcattcg ccctctttca gaaatagaat
     2101 agtttttgtc atctatttat ccttcttcca tgcactgaaa tgtgtgcact tatcttaacc
     2161 ttggtctatt tgagctatcc aaagccatta catctctctg ctttcagaaa tgcacctctt
     2221 ctctttgcca gtcctggtgg cttatagcca ggtggggtag aacaaggata tgggattcct
     2281 ggaaggccag ttgttctgca agagaactca cgtcatggaa gaagagacat cccacctcct
     2341 acgtacattc atcctcttga gtgttctgta caagggcaga gttaggcaga cattatgtgt
     2401 ttggattgca atcaactaca aagttcagtc aaagcttgag gctagagaat gtcccgtctt
     2461 gcttttagga agaaggcctt tcccagacac acaactcagc ttctctgggc actggtccag
     2521 tgatagaaag gaaaggttcc cgaggtgcct gcttttgatg agcagggaat gtcatcacag
     2581 atgggataac acataaccct aaccctaacc taaccctaaa ttatattcgc accaccatca
     2641 cacctgtcat ccaggtatga tggcaccatc cacgaggtca gcttgacgct ggcaccctcc
     2701 caagtggcag ataagggacg agtgagtagg ataagagaga gagtacccaa ggggcaggga
     2761 tggtgggagt gaggtgggga gtgtgggcaa gaaatgcagt gtttagggag agtctgcttt
     2821 gttctgggca cccccctgca ttatatcttt tatcatttat atttcaaacc agtgccctca
     2881 ccctcgtccc agtgctctgc gtatgacccc tgcaggtgtc atgacaatgt gatttccatg
     2941 ccctaaagtt caacttcaca tcccaacatc cctcattgtt cctcaacaat tcaaagacag
     3001 gtttaaaaaa atccaattaa gcatttactg agcacccatc ctctacccca cgtggtggca
     3061 aagattgtgg aggatcagag agaagcatgg ggcactgtct ttgctgcctt cacagaactt
     3121 tcattctgac aaataaataa ggcatcggtt aaaacact
//
LOCUS       XM_032646927            1606 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 24 (IL24), transcript variant
            X1, mRNA.
ACCESSION   XM_032646927
VERSION     XM_032646927.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1606
                     /gene="IL24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 95% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761143"
     CDS             204..908
                     /gene="IL24"
                     /codon_start=1
                     /product="interleukin-24 isoform X1"
                     /protein_id="XP_032502818.1"
                     /db_xref="GeneID:116761143"
                     /translation="MGSPVRMAALPCLSLILLFWSQGPGVRGQEFQFGPCQVEGVVLQ
                     ELWEAFQAMKDIVQAQDNITSVQLLRKEVLQNVSEAESCYLIHALLEFYLNTVFKNYR
                     DKAVEFGILKSFSTLANNFIVIVSKLQPSQEKEMFSISESAYRRFLLFQRAFKQLDRE
                     AAVTKAFGEVDILLTWMENFYQAPDAQAQRPWLTGPAAPRHVGSSRTGARTSVPCIGR
                     RTPNHCATREAQDFIL"
     misc_feature    309..734
                     /gene="IL24"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 ttgcctatgc acctttactt ttgaagctgc ttgcatagct ggaacaggag ccttccattc
       61 acagttgcac cctgatcgct gaatggtagg ggtgcctgcc caaccctctt cctctacaac
      121 aggaaccagc cacctctaaa cagcaaaccc tcaagcatca cttctaggac ctgaggatcg
      181 ccccggtcct ttctctgctg cagatgggct ctcctgtgcg catggctgcc cttccctgcc
      241 tgagtctgat cctgcttttc tggagccagg ggccaggggt ccggggccaa gaattccaat
      301 ttgggccctg ccaagtagaa ggggtagttc ttcaggaact gtgggaagcg ttccaggcca
      361 tgaaggacat tgtgcaagct caggataata tcacgagcgt ccagctgctg cggaaggagg
      421 ttctgcagaa tgtctcggag gctgaaagct gctacctcat ccatgccctg ctggagttct
      481 acttgaacac cgtcttcaaa aactaccgcg ataaggcagt tgaattcggg atcctgaagt
      541 cattctctac tctggccaac aactttattg tcatcgtgtc caaactgcaa cccagtcagg
      601 aaaaggagat gttttccatc agtgagagtg catacagacg gtttctgctg ttccagcgag
      661 catttaaaca gttggacaga gaagcagctg tgaccaaagc ctttggagaa gtggacattc
      721 tcttgacctg gatggagaat ttctaccagg caccagacgc gcaggctcag cggccatggc
      781 tcacgggccc agccgctccg cggcacgtgg gatcctcccg gaccggggca cgaaccagtg
      841 tcccctgcat cggcaggcgg acccccaacc actgtgccac cagggaagcc caagacttca
      901 ttctttaagg gaccccaaca acagtcgtgg aaggttccct cgggtgctgc aaataaccta
      961 caaagcagat tcctatattt attacaacgc tatttaattc ctatcagtgt tttaaccgat
     1021 gccttattta tttgtcagaa tgaaagttct gtgaaggcag caaagacagt gccccatgct
     1081 tctctctgat cctccacaat ctttgccacc acgtggggta gaggatgggt gctcagtaaa
     1141 tgcttaattg gattttttta aacctgtctt tgaattgttg aggaacaatg agggatgttg
     1201 ggatgtgaag ttgaacttta gggcatggaa atcacattgt catgacacct gcaggggtca
     1261 tacgcagagc actgggacga gggtgagggc actggtttga aatataaatg ataaaagata
     1321 taatgcaggg gggtgcccag aacaaagcag actctcccta aacactgcat ttcttgccca
     1381 cactccccac ctcactccca ccatccctgc cccttgggta ctctctctct tatcctactc
     1441 actcgtccct tatctgccac ttgggagggt gccagcgtca agctgacctc gtggatggtg
     1501 ccatcatacc tggatgacag gtgtgatggt ggtgcgaata taatttaggg ttaggttagg
     1561 gttagggtta tgtgttatcc catctgtgat gacattccct gctcat
//
LOCUS       XM_032646931            1930 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 24 (IL24), transcript variant
            X2, mRNA.
ACCESSION   XM_032646931
VERSION     XM_032646931.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1930
                     /gene="IL24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 91% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761143"
     CDS             204..866
                     /gene="IL24"
                     /codon_start=1
                     /product="interleukin-24 isoform X2"
                     /protein_id="XP_032502822.1"
                     /db_xref="GeneID:116761143"
                     /translation="MGSPVRMAALPCLSLILLFWSQGPGVRGQEFQFGPCQVEGVVLQ
                     ELWEAFQAMKDIVQAQDNITSVQLLRKEVLQNVSMIAASTVLILPCMAREWFIQHWGG
                     QRPWLRNDPTPPQEAESCYLIHALLEFYLNTVFKNYRDKAVEFGILKSFSTLANNFIV
                     IVSKLQPSQEKEMFSISESAYRRFLLFQRAFKQLDREAAVTKAFGEVDILLTWMENFY
                     QV"
     misc_feature    <552..845
                     /gene="IL24"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 ttgcctatgc acctttactt ttgaagctgc ttgcatagct ggaacaggag ccttccattc
       61 acagttgcac cctgatcgct gaatggtagg ggtgcctgcc caaccctctt cctctacaac
      121 aggaaccagc cacctctaaa cagcaaaccc tcaagcatca cttctaggac ctgaggatcg
      181 ccccggtcct ttctctgctg cagatgggct ctcctgtgcg catggctgcc cttccctgcc
      241 tgagtctgat cctgcttttc tggagccagg ggccaggggt ccggggccaa gaattccaat
      301 ttgggccctg ccaagtagaa ggggtagttc ttcaggaact gtgggaagcg ttccaggcca
      361 tgaaggacat tgtgcaagct caggataata tcacgagcgt ccagctgctg cggaaggagg
      421 ttctgcagaa tgtctcgatg attgctgcct ctactgtgct tatcttgcct tgcatggcac
      481 gtgagtggtt catccagcac tggggtgggc agaggccttg gctccgcaat gaccccaccc
      541 ctccccagga ggctgaaagc tgctacctca tccatgccct gctggagttc tacttgaaca
      601 ccgtcttcaa aaactaccgc gataaggcag ttgaattcgg gatcctgaag tcattctcta
      661 ctctggccaa caactttatt gtcatcgtgt ccaaactgca acccagtcag gaaaaggaga
      721 tgttttccat cagtgagagt gcatacagac ggtttctgct gttccagcga gcatttaaac
      781 agttggacag agaagcagct gtgaccaaag cctttggaga agtggacatt ctcttgacct
      841 ggatggagaa tttctaccag gtctgaaggc ctaggccagg ataccctcct cgttctctgt
      901 gtcatttcaa acaagcgttc ctccccatga tgttctctgg gtgcttcaca tccttgacaa
      961 tgggccccat ccttggcaca ggctaacctc aaagacttca ttcttttttt tttttttttt
     1021 tttgcggtac gtgggcctct cactgttgtg gcctctcccc ctgcggaaca caggcaccag
     1081 acgcgcaggc tcagcggcca tggctcacgg gcccagccgc tccgcggcac gtgggatcct
     1141 cccggaccgg ggcacgaacc agtgtcccct gcatcggcag gcggaccccc aaccactgtg
     1201 ccaccaggga agcccaagac ttcattcttt aagggacccc aacaacagtc gtggaaggtt
     1261 ccctcgggtg ctgcaaataa cctacaaagc agattcctat atttattaca acgctattta
     1321 attcctatca gtgttttaac cgatgcctta tttatttgtc agaatgaaag ttctgtgaag
     1381 gcagcaaaga cagtgcccca tgcttctctc tgatcctcca caatctttgc caccacgtgg
     1441 ggtagaggat gggtgctcag taaatgctta attggatttt tttaaacctg tctttgaatt
     1501 gttgaggaac aatgagggat gttgggatgt gaagttgaac tttagggcat ggaaatcaca
     1561 ttgtcatgac acctgcaggg gtcatacgca gagcactggg acgagggtga gggcactggt
     1621 ttgaaatata aatgataaaa gatataatgc aggggggtgc ccagaacaaa gcagactctc
     1681 cctaaacact gcatttcttg cccacactcc ccacctcact cccaccatcc ctgccccttg
     1741 ggtactctct ctcttatcct actcactcgt cccttatctg ccacttggga gggtgccagc
     1801 gtcaagctga cctcgtggat ggtgccatca tacctggatg acaggtgtga tggtggtgcg
     1861 aatataattt agggttaggt tagggttagg gttatgtgtt atcccatctg tgatgacatt
     1921 ccctgctcat
//
LOCUS       XM_032646933            1819 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 24 (IL24), transcript variant
            X3, mRNA.
ACCESSION   XM_032646933
VERSION     XM_032646933.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1819
                     /gene="IL24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761143"
     CDS             204..755
                     /gene="IL24"
                     /codon_start=1
                     /product="interleukin-24 isoform X3"
                     /protein_id="XP_032502824.1"
                     /db_xref="GeneID:116761143"
                     /translation="MGSPVRMAALPCLSLILLFWSQGPGVRGQEFQFGPCQVEGVVLQ
                     ELWEAFQAMKDIVQAQDNITSVQLLRKEVLQNVSEAESCYLIHALLEFYLNTVFKNYR
                     DKAVEFGILKSFSTLANNFIVIVSKLQPSQEKEMFSISESAYRRFLLFQRAFKQLDRE
                     AAVTKAFGEVDILLTWMENFYQV"
     misc_feature    309..734
                     /gene="IL24"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 ttgcctatgc acctttactt ttgaagctgc ttgcatagct ggaacaggag ccttccattc
       61 acagttgcac cctgatcgct gaatggtagg ggtgcctgcc caaccctctt cctctacaac
      121 aggaaccagc cacctctaaa cagcaaaccc tcaagcatca cttctaggac ctgaggatcg
      181 ccccggtcct ttctctgctg cagatgggct ctcctgtgcg catggctgcc cttccctgcc
      241 tgagtctgat cctgcttttc tggagccagg ggccaggggt ccggggccaa gaattccaat
      301 ttgggccctg ccaagtagaa ggggtagttc ttcaggaact gtgggaagcg ttccaggcca
      361 tgaaggacat tgtgcaagct caggataata tcacgagcgt ccagctgctg cggaaggagg
      421 ttctgcagaa tgtctcggag gctgaaagct gctacctcat ccatgccctg ctggagttct
      481 acttgaacac cgtcttcaaa aactaccgcg ataaggcagt tgaattcggg atcctgaagt
      541 cattctctac tctggccaac aactttattg tcatcgtgtc caaactgcaa cccagtcagg
      601 aaaaggagat gttttccatc agtgagagtg catacagacg gtttctgctg ttccagcgag
      661 catttaaaca gttggacaga gaagcagctg tgaccaaagc ctttggagaa gtggacattc
      721 tcttgacctg gatggagaat ttctaccagg tctgaaggcc taggccagga taccctcctc
      781 gttctctgtg tcatttcaaa caagcgttcc tccccatgat gttctctggg tgcttcacat
      841 ccttgacaat gggccccatc cttggcacag gctaacctca aagacttcat tctttttttt
      901 tttttttttt ttgcggtacg tgggcctctc actgttgtgg cctctccccc tgcggaacac
      961 aggcaccaga cgcgcaggct cagcggccat ggctcacggg cccagccgct ccgcggcacg
     1021 tgggatcctc ccggaccggg gcacgaacca gtgtcccctg catcggcagg cggaccccca
     1081 accactgtgc caccagggaa gcccaagact tcattcttta agggacccca acaacagtcg
     1141 tggaaggttc cctcgggtgc tgcaaataac ctacaaagca gattcctata tttattacaa
     1201 cgctatttaa ttcctatcag tgttttaacc gatgccttat ttatttgtca gaatgaaagt
     1261 tctgtgaagg cagcaaagac agtgccccat gcttctctct gatcctccac aatctttgcc
     1321 accacgtggg gtagaggatg ggtgctcagt aaatgcttaa ttggattttt ttaaacctgt
     1381 ctttgaattg ttgaggaaca atgagggatg ttgggatgtg aagttgaact ttagggcatg
     1441 gaaatcacat tgtcatgaca cctgcagggg tcatacgcag agcactggga cgagggtgag
     1501 ggcactggtt tgaaatataa atgataaaag atataatgca ggggggtgcc cagaacaaag
     1561 cagactctcc ctaaacactg catttcttgc ccacactccc cacctcactc ccaccatccc
     1621 tgccccttgg gtactctctc tcttatccta ctcactcgtc ccttatctgc cacttgggag
     1681 ggtgccagcg tcaagctgac ctcgtggatg gtgccatcat acctggatga caggtgtgat
     1741 ggtggtgcga atataattta gggttaggtt agggttaggg ttatgtgtta tcccatctgt
     1801 gatgacattc cctgctcat
//
LOCUS       XM_032646937            1822 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 24 (IL24), transcript variant
            X4, mRNA.
ACCESSION   XM_032646937
VERSION     XM_032646937.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1822
                     /gene="IL24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761143"
     CDS             207..758
                     /gene="IL24"
                     /codon_start=1
                     /product="interleukin-24 isoform X3"
                     /protein_id="XP_032502828.1"
                     /db_xref="GeneID:116761143"
                     /translation="MGSPVRMAALPCLSLILLFWSQGPGVRGQEFQFGPCQVEGVVLQ
                     ELWEAFQAMKDIVQAQDNITSVQLLRKEVLQNVSEAESCYLIHALLEFYLNTVFKNYR
                     DKAVEFGILKSFSTLANNFIVIVSKLQPSQEKEMFSISESAYRRFLLFQRAFKQLDRE
                     AAVTKAFGEVDILLTWMENFYQV"
     misc_feature    312..737
                     /gene="IL24"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 ttgcctatgc acctttactt ttgaagctgc ttgcatagct ggaacaggag ccttccattc
       61 acagttgcac cctgatcgct gaatggtagg ggtgcctgcc caaccctctt cctctacaac
      121 aggaaccagc cacctctaaa cagcaaaccc tcaagcatca cttctaggac ctgagcagga
      181 tcgccccggt cctttctctg ctgcagatgg gctctcctgt gcgcatggct gcccttccct
      241 gcctgagtct gatcctgctt ttctggagcc aggggccagg ggtccggggc caagaattcc
      301 aatttgggcc ctgccaagta gaaggggtag ttcttcagga actgtgggaa gcgttccagg
      361 ccatgaagga cattgtgcaa gctcaggata atatcacgag cgtccagctg ctgcggaagg
      421 aggttctgca gaatgtctcg gaggctgaaa gctgctacct catccatgcc ctgctggagt
      481 tctacttgaa caccgtcttc aaaaactacc gcgataaggc agttgaattc gggatcctga
      541 agtcattctc tactctggcc aacaacttta ttgtcatcgt gtccaaactg caacccagtc
      601 aggaaaagga gatgttttcc atcagtgaga gtgcatacag acggtttctg ctgttccagc
      661 gagcatttaa acagttggac agagaagcag ctgtgaccaa agcctttgga gaagtggaca
      721 ttctcttgac ctggatggag aatttctacc aggtctgaag gcctaggcca ggataccctc
      781 ctcgttctct gtgtcatttc aaacaagcgt tcctccccat gatgttctct gggtgcttca
      841 catccttgac aatgggcccc atccttggca caggctaacc tcaaagactt cattcttttt
      901 tttttttttt tttttgcggt acgtgggcct ctcactgttg tggcctctcc ccctgcggaa
      961 cacaggcacc agacgcgcag gctcagcggc catggctcac gggcccagcc gctccgcggc
     1021 acgtgggatc ctcccggacc ggggcacgaa ccagtgtccc ctgcatcggc aggcggaccc
     1081 ccaaccactg tgccaccagg gaagcccaag acttcattct ttaagggacc ccaacaacag
     1141 tcgtggaagg ttccctcggg tgctgcaaat aacctacaaa gcagattcct atatttatta
     1201 caacgctatt taattcctat cagtgtttta accgatgcct tatttatttg tcagaatgaa
     1261 agttctgtga aggcagcaaa gacagtgccc catgcttctc tctgatcctc cacaatcttt
     1321 gccaccacgt ggggtagagg atgggtgctc agtaaatgct taattggatt tttttaaacc
     1381 tgtctttgaa ttgttgagga acaatgaggg atgttgggat gtgaagttga actttagggc
     1441 atggaaatca cattgtcatg acacctgcag gggtcatacg cagagcactg ggacgagggt
     1501 gagggcactg gtttgaaata taaatgataa aagatataat gcaggggggt gcccagaaca
     1561 aagcagactc tccctaaaca ctgcatttct tgcccacact ccccacctca ctcccaccat
     1621 ccctgcccct tgggtactct ctctcttatc ctactcactc gtcccttatc tgccacttgg
     1681 gagggtgcca gcgtcaagct gacctcgtgg atggtgccat catacctgga tgacaggtgt
     1741 gatggtggtg cgaatataat ttagggttag gttagggtta gggttatgtg ttatcccatc
     1801 tgtgatgaca ttccctgctc at
//
LOCUS       XM_032646942            1791 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 24 (IL24), transcript variant
            X5, mRNA.
ACCESSION   XM_032646942
VERSION     XM_032646942.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1791
                     /gene="IL24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761143"
     CDS             176..727
                     /gene="IL24"
                     /codon_start=1
                     /product="interleukin-24 isoform X3"
                     /protein_id="XP_032502833.1"
                     /db_xref="GeneID:116761143"
                     /translation="MGSPVRMAALPCLSLILLFWSQGPGVRGQEFQFGPCQVEGVVLQ
                     ELWEAFQAMKDIVQAQDNITSVQLLRKEVLQNVSEAESCYLIHALLEFYLNTVFKNYR
                     DKAVEFGILKSFSTLANNFIVIVSKLQPSQEKEMFSISESAYRRFLLFQRAFKQLDRE
                     AAVTKAFGEVDILLTWMENFYQV"
     misc_feature    281..706
                     /gene="IL24"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 ttgcctatgc acctttactt ttgaagctgc ttgcatagct ggaacaggag ccttccattc
       61 acagttgcac cctgatcgct gaatggtagg ggtgcctgcc caaccctctt cctctacaac
      121 aggaaccagc cacctctaaa cagcaaaccc tcaagcatca cttctaggac ctgagatggg
      181 ctctcctgtg cgcatggctg cccttccctg cctgagtctg atcctgcttt tctggagcca
      241 ggggccaggg gtccggggcc aagaattcca atttgggccc tgccaagtag aaggggtagt
      301 tcttcaggaa ctgtgggaag cgttccaggc catgaaggac attgtgcaag ctcaggataa
      361 tatcacgagc gtccagctgc tgcggaagga ggttctgcag aatgtctcgg aggctgaaag
      421 ctgctacctc atccatgccc tgctggagtt ctacttgaac accgtcttca aaaactaccg
      481 cgataaggca gttgaattcg ggatcctgaa gtcattctct actctggcca acaactttat
      541 tgtcatcgtg tccaaactgc aacccagtca ggaaaaggag atgttttcca tcagtgagag
      601 tgcatacaga cggtttctgc tgttccagcg agcatttaaa cagttggaca gagaagcagc
      661 tgtgaccaaa gcctttggag aagtggacat tctcttgacc tggatggaga atttctacca
      721 ggtctgaagg cctaggccag gataccctcc tcgttctctg tgtcatttca aacaagcgtt
      781 cctccccatg atgttctctg ggtgcttcac atccttgaca atgggcccca tccttggcac
      841 aggctaacct caaagacttc attctttttt tttttttttt ttttgcggta cgtgggcctc
      901 tcactgttgt ggcctctccc cctgcggaac acaggcacca gacgcgcagg ctcagcggcc
      961 atggctcacg ggcccagccg ctccgcggca cgtgggatcc tcccggaccg gggcacgaac
     1021 cagtgtcccc tgcatcggca ggcggacccc caaccactgt gccaccaggg aagcccaaga
     1081 cttcattctt taagggaccc caacaacagt cgtggaaggt tccctcgggt gctgcaaata
     1141 acctacaaag cagattccta tatttattac aacgctattt aattcctatc agtgttttaa
     1201 ccgatgcctt atttatttgt cagaatgaaa gttctgtgaa ggcagcaaag acagtgcccc
     1261 atgcttctct ctgatcctcc acaatctttg ccaccacgtg gggtagagga tgggtgctca
     1321 gtaaatgctt aattggattt ttttaaacct gtctttgaat tgttgaggaa caatgaggga
     1381 tgttgggatg tgaagttgaa ctttagggca tggaaatcac attgtcatga cacctgcagg
     1441 ggtcatacgc agagcactgg gacgagggtg agggcactgg tttgaaatat aaatgataaa
     1501 agatataatg caggggggtg cccagaacaa agcagactct ccctaaacac tgcatttctt
     1561 gcccacactc cccacctcac tcccaccatc cctgcccctt gggtactctc tctcttatcc
     1621 tactcactcg tcccttatct gccacttggg agggtgccag cgtcaagctg acctcgtgga
     1681 tggtgccatc atacctggat gacaggtgtg atggtggtgc gaatataatt tagggttagg
     1741 ttagggttag ggttatgtgt tatcccatct gtgatgacat tccctgctca t
//
LOCUS       XM_032646945            1816 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 24 (IL24), transcript variant
            X6, mRNA.
ACCESSION   XM_032646945
VERSION     XM_032646945.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1816
                     /gene="IL24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761143"
     CDS             204..752
                     /gene="IL24"
                     /codon_start=1
                     /product="interleukin-24 isoform X4"
                     /protein_id="XP_032502836.1"
                     /db_xref="GeneID:116761143"
                     /translation="MGSPVRMAALPCLSLILLFWSQGPGVRGQEFQFGPCQVEGVVLQ
                     ELWEAFQAMKDIVQAQDNITSVQLLRKEVLQNVSEAESCYLIHALLEFYLNTVFKNYR
                     DKAVEFGILKSFSTLANNFIVIVSKLQPSEKEMFSISESAYRRFLLFQRAFKQLDREA
                     AVTKAFGEVDILLTWMENFYQV"
     misc_feature    309..731
                     /gene="IL24"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 ttgcctatgc acctttactt ttgaagctgc ttgcatagct ggaacaggag ccttccattc
       61 acagttgcac cctgatcgct gaatggtagg ggtgcctgcc caaccctctt cctctacaac
      121 aggaaccagc cacctctaaa cagcaaaccc tcaagcatca cttctaggac ctgaggatcg
      181 ccccggtcct ttctctgctg cagatgggct ctcctgtgcg catggctgcc cttccctgcc
      241 tgagtctgat cctgcttttc tggagccagg ggccaggggt ccggggccaa gaattccaat
      301 ttgggccctg ccaagtagaa ggggtagttc ttcaggaact gtgggaagcg ttccaggcca
      361 tgaaggacat tgtgcaagct caggataata tcacgagcgt ccagctgctg cggaaggagg
      421 ttctgcagaa tgtctcggag gctgaaagct gctacctcat ccatgccctg ctggagttct
      481 acttgaacac cgtcttcaaa aactaccgcg ataaggcagt tgaattcggg atcctgaagt
      541 cattctctac tctggccaac aactttattg tcatcgtgtc caaactgcaa cccagtgaaa
      601 aggagatgtt ttccatcagt gagagtgcat acagacggtt tctgctgttc cagcgagcat
      661 ttaaacagtt ggacagagaa gcagctgtga ccaaagcctt tggagaagtg gacattctct
      721 tgacctggat ggagaatttc taccaggtct gaaggcctag gccaggatac cctcctcgtt
      781 ctctgtgtca tttcaaacaa gcgttcctcc ccatgatgtt ctctgggtgc ttcacatcct
      841 tgacaatggg ccccatcctt ggcacaggct aacctcaaag acttcattct tttttttttt
      901 tttttttttg cggtacgtgg gcctctcact gttgtggcct ctccccctgc ggaacacagg
      961 caccagacgc gcaggctcag cggccatggc tcacgggccc agccgctccg cggcacgtgg
     1021 gatcctcccg gaccggggca cgaaccagtg tcccctgcat cggcaggcgg acccccaacc
     1081 actgtgccac cagggaagcc caagacttca ttctttaagg gaccccaaca acagtcgtgg
     1141 aaggttccct cgggtgctgc aaataaccta caaagcagat tcctatattt attacaacgc
     1201 tatttaattc ctatcagtgt tttaaccgat gccttattta tttgtcagaa tgaaagttct
     1261 gtgaaggcag caaagacagt gccccatgct tctctctgat cctccacaat ctttgccacc
     1321 acgtggggta gaggatgggt gctcagtaaa tgcttaattg gattttttta aacctgtctt
     1381 tgaattgttg aggaacaatg agggatgttg ggatgtgaag ttgaacttta gggcatggaa
     1441 atcacattgt catgacacct gcaggggtca tacgcagagc actgggacga gggtgagggc
     1501 actggtttga aatataaatg ataaaagata taatgcaggg gggtgcccag aacaaagcag
     1561 actctcccta aacactgcat ttcttgccca cactccccac ctcactccca ccatccctgc
     1621 cccttgggta ctctctctct tatcctactc actcgtccct tatctgccac ttgggagggt
     1681 gccagcgtca agctgacctc gtggatggtg ccatcatacc tggatgacag gtgtgatggt
     1741 ggtgcgaata taatttaggg ttaggttagg gttagggtta tgtgttatcc catctgtgat
     1801 gacattccct gctcat
//
LOCUS       XM_032646950            1788 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 24 (IL24), transcript variant
            X7, mRNA.
ACCESSION   XM_032646950
VERSION     XM_032646950.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1788
                     /gene="IL24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761143"
     CDS             176..724
                     /gene="IL24"
                     /codon_start=1
                     /product="interleukin-24 isoform X4"
                     /protein_id="XP_032502841.1"
                     /db_xref="GeneID:116761143"
                     /translation="MGSPVRMAALPCLSLILLFWSQGPGVRGQEFQFGPCQVEGVVLQ
                     ELWEAFQAMKDIVQAQDNITSVQLLRKEVLQNVSEAESCYLIHALLEFYLNTVFKNYR
                     DKAVEFGILKSFSTLANNFIVIVSKLQPSEKEMFSISESAYRRFLLFQRAFKQLDREA
                     AVTKAFGEVDILLTWMENFYQV"
     misc_feature    281..703
                     /gene="IL24"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 ttgcctatgc acctttactt ttgaagctgc ttgcatagct ggaacaggag ccttccattc
       61 acagttgcac cctgatcgct gaatggtagg ggtgcctgcc caaccctctt cctctacaac
      121 aggaaccagc cacctctaaa cagcaaaccc tcaagcatca cttctaggac ctgagatggg
      181 ctctcctgtg cgcatggctg cccttccctg cctgagtctg atcctgcttt tctggagcca
      241 ggggccaggg gtccggggcc aagaattcca atttgggccc tgccaagtag aaggggtagt
      301 tcttcaggaa ctgtgggaag cgttccaggc catgaaggac attgtgcaag ctcaggataa
      361 tatcacgagc gtccagctgc tgcggaagga ggttctgcag aatgtctcgg aggctgaaag
      421 ctgctacctc atccatgccc tgctggagtt ctacttgaac accgtcttca aaaactaccg
      481 cgataaggca gttgaattcg ggatcctgaa gtcattctct actctggcca acaactttat
      541 tgtcatcgtg tccaaactgc aacccagtga aaaggagatg ttttccatca gtgagagtgc
      601 atacagacgg tttctgctgt tccagcgagc atttaaacag ttggacagag aagcagctgt
      661 gaccaaagcc tttggagaag tggacattct cttgacctgg atggagaatt tctaccaggt
      721 ctgaaggcct aggccaggat accctcctcg ttctctgtgt catttcaaac aagcgttcct
      781 ccccatgatg ttctctgggt gcttcacatc cttgacaatg ggccccatcc ttggcacagg
      841 ctaacctcaa agacttcatt cttttttttt tttttttttt tgcggtacgt gggcctctca
      901 ctgttgtggc ctctccccct gcggaacaca ggcaccagac gcgcaggctc agcggccatg
      961 gctcacgggc ccagccgctc cgcggcacgt gggatcctcc cggaccgggg cacgaaccag
     1021 tgtcccctgc atcggcaggc ggacccccaa ccactgtgcc accagggaag cccaagactt
     1081 cattctttaa gggaccccaa caacagtcgt ggaaggttcc ctcgggtgct gcaaataacc
     1141 tacaaagcag attcctatat ttattacaac gctatttaat tcctatcagt gttttaaccg
     1201 atgccttatt tatttgtcag aatgaaagtt ctgtgaaggc agcaaagaca gtgccccatg
     1261 cttctctctg atcctccaca atctttgcca ccacgtgggg tagaggatgg gtgctcagta
     1321 aatgcttaat tggatttttt taaacctgtc tttgaattgt tgaggaacaa tgagggatgt
     1381 tgggatgtga agttgaactt tagggcatgg aaatcacatt gtcatgacac ctgcaggggt
     1441 catacgcaga gcactgggac gagggtgagg gcactggttt gaaatataaa tgataaaaga
     1501 tataatgcag gggggtgccc agaacaaagc agactctccc taaacactgc atttcttgcc
     1561 cacactcccc acctcactcc caccatccct gccccttggg tactctctct cttatcctac
     1621 tcactcgtcc cttatctgcc acttgggagg gtgccagcgt caagctgacc tcgtggatgg
     1681 tgccatcata cctggatgac aggtgtgatg gtggtgcgaa tataatttag ggttaggtta
     1741 gggttagggt tatgtgttat cccatctgtg atgacattcc ctgctcat
//
LOCUS       XM_032646954            1654 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 24 (IL24), transcript variant
            X8, mRNA.
ACCESSION   XM_032646954
VERSION     XM_032646954.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1654
                     /gene="IL24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 95% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761143"
     CDS             204..764
                     /gene="IL24"
                     /codon_start=1
                     /product="interleukin-24 isoform X5"
                     /protein_id="XP_032502845.1"
                     /db_xref="GeneID:116761143"
                     /translation="MGSPVRMAALPCLSLILLFWSQGPGVRGQEFQFGPCQVEGVVLQ
                     ELWEAFQAMKDIVQAQDNITSVQLLRKEVLQNVSEAESCYLIHALLEFYLNTVFKNYR
                     DKAVEFGILKSFSTLANNFIVIVSKLQPSQEKEMFSISESAYRRFLLFQRAFKQLDRE
                     AAVTKAFGEVDILLTWMENFYQTWCW"
     misc_feature    309..734
                     /gene="IL24"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 ttgcctatgc acctttactt ttgaagctgc ttgcatagct ggaacaggag ccttccattc
       61 acagttgcac cctgatcgct gaatggtagg ggtgcctgcc caaccctctt cctctacaac
      121 aggaaccagc cacctctaaa cagcaaaccc tcaagcatca cttctaggac ctgaggatcg
      181 ccccggtcct ttctctgctg cagatgggct ctcctgtgcg catggctgcc cttccctgcc
      241 tgagtctgat cctgcttttc tggagccagg ggccaggggt ccggggccaa gaattccaat
      301 ttgggccctg ccaagtagaa ggggtagttc ttcaggaact gtgggaagcg ttccaggcca
      361 tgaaggacat tgtgcaagct caggataata tcacgagcgt ccagctgctg cggaaggagg
      421 ttctgcagaa tgtctcggag gctgaaagct gctacctcat ccatgccctg ctggagttct
      481 acttgaacac cgtcttcaaa aactaccgcg ataaggcagt tgaattcggg atcctgaagt
      541 cattctctac tctggccaac aactttattg tcatcgtgtc caaactgcaa cccagtcagg
      601 aaaaggagat gttttccatc agtgagagtg catacagacg gtttctgctg ttccagcgag
      661 catttaaaca gttggacaga gaagcagctg tgaccaaagc ctttggagaa gtggacattc
      721 tcttgacctg gatggagaat ttctaccaga catggtgctg gtgattgagc attgaccgca
      781 gacagatgga cgcggcaaga ctccagggga tggtgcagca acaggcagaa ggcatttgag
      841 tccctggatg accccatggc tcaggccacc tcctcctggc tacctgcctt tgcttcagag
      901 gaaaataggc ttccaggttg tgggccgtgg tttagggttt gctgcattag cttagcctac
      961 cccctaatta aatcagggaa acttgccaca ctagttttac tggttcctga agtaataatg
     1021 tttctgctat ggtaggctgc tttagagaat aaaatgaata gtttaaaggt ttttcacaca
     1081 tctgccaaat ggccatcaat agaaagatga gaagaaaaaa aaagaaagaa agatgagttc
     1141 cctatgtcca aacctagatt tcaagaggaa tattcttcat ccaaagtgtt taatcttatc
     1201 tacgtctcta ggccaggctt aactgccttc agtgatgggt aaacaacctc ctctcatctt
     1261 cgagggctta ctagaaagta cttcctcata ttaaggtgaa actgggtaac ttccaccccc
     1321 ttaagatcac ctagaaatcg aatcttttcc acatgaaagc ccttcacgta tttgtagagg
     1381 taccatctat catcctctac taagctccca tttatcccat gagaaatgct tggctaaaag
     1441 ccgtgtaact aagtctacca caattgttgc gtactactac tgacaccatc aaaggaggaa
     1501 actgatacta gttcccagac tcagggcccg gggagccgct gcgaaagccc ccgccctcca
     1561 gctaagccga agctccaccg attgcgctcg ggtccaagcc caggtctggg gccgcccatt
     1621 agggccgcag ctgccaatca gggggcgggg cgga
//
LOCUS       XM_032646959            4463 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adenosylhomocysteinase like 1 (AHCYL1),
            transcript variant X1, mRNA.
ACCESSION   XM_032646959
VERSION     XM_032646959.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4463
                     /gene="AHCYL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 22 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761201"
     CDS             285..1877
                     /gene="AHCYL1"
                     /codon_start=1
                     /product="S-adenosylhomocysteine hydrolase-like protein 1
                     isoform X1"
                     /protein_id="XP_032502850.1"
                     /db_xref="GeneID:116761201"
                     /translation="MSMPDAMPLPGVGEELKQAKEIEDAEKYSFMATVTKAPKKQIQF
                     ADDMQEFTKFPTKTGRRSLSRSISQSSTDSYSSAASYTDSSDDEVSPREKQQTNSKGS
                     SNFCVKNIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQTAV
                     LIETLCALGAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRCVNM
                     DGWQANMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAM
                     NVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALG
                     AIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTGNKNVVTREHLDRMKNSC
                     IVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVVLLAEGRLLNLSCSTV
                     PTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELT
                     DDQAKYLGLNKNGPFKPNYYRY"
     misc_feature    600..1871
                     /gene="AHCYL1"
                     /note="S-adenosyl-L-homocysteine hydrolase; Region:
                     AdoHcyase; smart00996"
                     /db_xref="CDD:214963"
     misc_feature    order(627..629,636..638,648..650,657..662,1062..1064,
                     1071..1076,1122..1124,1128..1130,1140..1145,1155..1157,
                     1164..1169,1179..1181,1188..1193,1200..1220,1242..1247,
                     1254..1256,1281..1286,1290..1292,1305..1331,1335..1346,
                     1350..1361,1368..1370,1407..1421,1449..1457,1488..1490,
                     1539..1544,1557..1559,1629..1631,1635..1637,1641..1646,
                     1653..1655,1731..1733,1749..1754,1761..1766,1773..1775,
                     1782..1787,1791..1799,1803..1805,1812..1817,1824..1829)
                     /gene="AHCYL1"
                     /note="homotetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240619"
     misc_feature    order(741..743,747..749,753..758,969..971,1044..1049,
                     1134..1136,1146..1148,1617..1619,1632..1634,1647..1649,
                     1659..1661)
                     /gene="AHCYL1"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:240619"
     misc_feature    order(1047..1055,1149..1151,1161..1163,1236..1238,
                     1242..1250,1302..1313,1320..1322,1401..1412,1419..1421,
                     1473..1481,1608..1610,1614..1616,1632..1634)
                     /gene="AHCYL1"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:240619"
ORIGIN      
        1 gtgcgtgttt gcgtgcggcg gaggtggtgg cgcgggccgg tcggagctcc gtgttgcttg
       61 cttctggtgc tcctgtcgct gccgtcgctg tccggctgtc ttggacggcc gagcggacga
      121 ggcgccggcc ccagcacctc agcaccggac gcggctcggc gcggggcccc gcctggaggg
      181 tgggcgagcg cgtgtcggag ggtgccgcgc gggtaggcgg gcgggcgccc gtaagggaaa
      241 gaggcggggg cggcgggtca gccgcggccc gggccggccg ggggatgtcg atgcctgacg
      301 cgatgccgct gcccggtgtc ggggaggagc tgaagcaggc caaggagatt gaggacgccg
      361 agaagtactc cttcatggcc accgtcacca aggcgcccaa gaagcaaatc cagtttgctg
      421 atgacatgca ggagttcacc aaattcccca ccaagactgg tcgacgatct ttgtctcgct
      481 ctatttctca gtcctccact gacagctaca gttcagctgc gtcctataca gatagctctg
      541 atgatgaggt ttccccccga gaaaagcagc aaaccaactc caagggcagc agcaatttct
      601 gtgtgaagaa catcaagcag gcagaatttg gacgccggga gattgagatt gcagagcaag
      661 acatgtctgc tctgatttca ctcaggaaac gtgctcaggg ggagaagccc ttggctggtg
      721 ctaaaatagt gggctgtaca catatcacag cccagacagc ggtgttgatt gaaacactct
      781 gtgccctggg ggctcagtgc cgctggtctg cctgcaacat ctactccact cagaatgaag
      841 tggctgcagc actggctgag gctggagttg cagtgtttgc ttggaagggc gagtcagaag
      901 atgacttctg gtggtgtatt gaccgctgtg tgaacatgga tgggtggcaa gccaacatga
      961 tcctggatga tgggggagac ttaacccact gggtttataa gaagtatcca aacgtgttta
     1021 agaagatccg aggcattgtg gaagagagcg tgactggtgt tcacaggctg tatcagctct
     1081 ccaaagctgg gaaactctgt gttccagcca tgaacgtcaa cgattctgtt accaaacaga
     1141 aatttgataa cttatactgc tgccgagaat ccattttaga tggcctgaag aggaccacag
     1201 atgtaatgtt tggtgggaaa caagtggtgg tgtgtggcta tggtgaggtg ggaaagggct
     1261 gctgtgctgc tctcaaggcc ctcggagcaa ttgtctatat cacagaaatt gaccccatct
     1321 gtgctctgca ggcctgcatg gatgggttca gggtggtaaa gctgaatgaa gtcatccggc
     1381 aagttgatgt cgtaataact tgcacaggaa ataagaacgt agtgacacgg gagcatttgg
     1441 atcgcatgaa aaacagttgt atcgtgtgca atatgggcca ctcaaacacg gaaattgatg
     1501 tgaccagcct ccgcactccg gagctgacat gggagcgagt acgttctcag gtggatcatg
     1561 tcatctggcc agatggcaaa cgcgtcgtcc ttctggcaga gggtcgtctg ctcaatctga
     1621 gctgctccac agttcccacc tttgttctgt ccatcacagc tacaacacag gctttggcac
     1681 tgatagaact ctataatgca cctgagggac gatacaaaca agatgtatac ttgcttccta
     1741 agaaaatgga tgagtacgtt gccagcttgc acctgccatc atttgatgcc cacctgacag
     1801 agctgacaga tgaccaagca aaatatctgg gactcaacaa aaacgggcca ttcaaaccca
     1861 attattacag atactaatgg accgaattac caaggaccag tccacatgaa ccacacaact
     1921 ctaaaagaaa tattttttaa gaaaactttt atttccttct ttatcctttc ctcttgattt
     1981 tttttcctat aatttctttc ttgttttttc atcttattat ccaagttctg cagaccacac
     2041 aggaacttgc ttcatggctc tttagatgaa acagagattc aaggtttctc accctagtca
     2101 ctaaagaagg attttactct cccagcccag aaaagtgatt ctttctttac catttctggg
     2161 gactttatag tcttaattgg gtaccttatt aacaggaaat gctgaggtac cttctatgtg
     2221 gaacaatctg caatgtctaa attgccttaa aagagcccat ttcttagctg ctgagatcag
     2281 tgctctttca cttcttcaga ggagcaggga tggtacctac caggcaggta ggttatatat
     2341 aggtggtgca tgttaatttc ccctagatgt tccaagccct gtttcctgtg taaaggtggt
     2401 atatttggtt cagagatgtg tactagtgag tgtcgcttgt taagatctgg taggcccact
     2461 tggatttagt acagcccttc ctccactccc atcagaccct ctcattttcc aggtttttat
     2521 ccagactgta ctctattaag ttgaattttg tcccctagca tttatttctg ggtttttctg
     2581 tttgtttttg ttttgtttgt ttttttggtt tttgtttttt tattttgttt ttttaagtaa
     2641 gaaaaatgtt tagtcttaat actgaggagc tgcttgagtg gttgttatca gtttatcttt
     2701 tgaacctttg gagctaaaag tgcagagttg agtctagaga aatgcagatc tcaaactctg
     2761 ataatccctc tgtttctagc ccatagttta tagcatcagt gaactggggc cataacagta
     2821 aattttatca gctctgcccc atcagcttgt gctgaaagca aatttcttga gccattactc
     2881 agtatacagc actgagctct gtctttagga tttatccttt aagagcaagt ttctaatcag
     2941 ctgtgcttct gcaatttaaa atacttaaag ggaggtagat gtggatggga ggaggaatga
     3001 taaattgggt caggctgagg gaaattagct ctgtataact tgtctgggac tttagtttta
     3061 cagaagcagt accacttttg atggacccat gtcacagaag gtttatgaac tgagacctta
     3121 aagggcagtt tgcgcataga gaaaataatc agtgtgtcct ggctcacact ctgaaagaat
     3181 cctcagagat aagagagatg tattcccatg ccatgcaccc tgcttaccag catttctgca
     3241 tggtcaggtg agctttgtgc tcatgagctt taagtgtata attatccagg attctaaatt
     3301 ctcaacttgt tctagctggt ggtccttcaa agttgggtca ggcagtagtg ctaggtacta
     3361 gaaattttca tttccctatt gccattgatc agagaagaca gacattaaaa atagaaattt
     3421 aagaaggaaa gctttcactc tgtgacttcc tagcaggggt cagtgatctt gccaaaacat
     3481 ttttccctct cctgtttctc cgtaaccagc ccattcgcac tccttgccag tgtgaccatg
     3541 ctttcttctc tgtagatgct aatggttcaa gccctttttc ccaaggcgtt taaccagcca
     3601 atcagaacag cacatccttt aggggaggta acctggccaa cagtggtatc catcgtgtga
     3661 gttctgctgg agggaagggg cccaggtcct gctgccctct ggcctgcccc ctgctcccat
     3721 atctattact gtgtccatag gaatactaga taagggctcc gtctctgtca agccatgtaa
     3781 caaaggacac tgtgggaaaa tgtctggcat cagagggagc gtgtagagag caacttggga
     3841 ggaacaagtt tattttgtat gatttttaat gaatgcaata ttaatccttg cagatgagca
     3901 ataatcatta aagtcaatta aaatgataag accttattgg aatcctgtgt cattcctggt
     3961 tgaacagtga aactttcgtt aaaacctgtt tttaaggagg gacaagtcag gggtcagtta
     4021 gcagtatcta ggagagattt gtttaggacc taatacgtag aagaacaggc tggatgcaga
     4081 gttcttcagt aatatcttaa aattttgtat gcctgctctg tactgagcat tgggcctgga
     4141 cactttcact ctgacttact tccaggagca gacttgctac ctaaaattca gggctcctca
     4201 cttacacggt ccccttataa gaccctgtac ctaattcttt tccttaaaaa atgcctccaa
     4261 agttatgtaa gcttcagcac ccccatacct gtatccatct ctgaagttat ctccatgtgt
     4321 tctgatttaa caatgtatct gttaatattg ttcagaagta ataccttttc tattttgtta
     4381 aaaatggtcc caaacaatgt tgatgttttc agtgcaattc tgtgaggttt tatccatgca
     4441 tataaatcca aatttaagac caa
//
LOCUS       XM_032646963            1874 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adenosylhomocysteinase like 1 (AHCYL1),
            transcript variant X2, mRNA.
ACCESSION   XM_032646963
VERSION     XM_032646963.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1874
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1874
                     /gene="AHCYL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761201"
     CDS             285..1874
                     /gene="AHCYL1"
                     /codon_start=1
                     /product="S-adenosylhomocysteine hydrolase-like protein 1
                     isoform X2"
                     /protein_id="XP_032502854.1"
                     /db_xref="GeneID:116761201"
                     /translation="MSMPDAMPLPGVGEELKQAKEIEDAEKYSFMATVTKAPKKQIQF
                     ADDMQEFTKFPTKTGRRSLSRSISQSSTDSYSSAASYTDSSDDEVSPREKQQTNSKGS
                     SNFCVKNIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQTAV
                     LIETLCALGAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRCVNM
                     DGWQANMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAM
                     NVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALG
                     AIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTGNKNVVTREHLDRMKNSC
                     IVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVVLLAEGRLLNLSCSTV
                     PTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELT
                     DDQAKYLGLNKNGPFKPNYYR"
     misc_feature    600..1871
                     /gene="AHCYL1"
                     /note="S-adenosyl-L-homocysteine hydrolase; Region:
                     AdoHcyase; smart00996"
                     /db_xref="CDD:214963"
     misc_feature    order(627..629,636..638,648..650,657..662,1062..1064,
                     1071..1076,1122..1124,1128..1130,1140..1145,1155..1157,
                     1164..1169,1179..1181,1188..1193,1200..1220,1242..1247,
                     1254..1256,1281..1286,1290..1292,1305..1331,1335..1346,
                     1350..1361,1368..1370,1407..1421,1449..1457,1488..1490,
                     1539..1544,1557..1559,1629..1631,1635..1637,1641..1646,
                     1653..1655,1731..1733,1749..1754,1761..1766,1773..1775,
                     1782..1787,1791..1799,1803..1805,1812..1817,1824..1829)
                     /gene="AHCYL1"
                     /note="homotetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240619"
     misc_feature    order(741..743,747..749,753..758,969..971,1044..1049,
                     1134..1136,1146..1148,1617..1619,1632..1634,1647..1649,
                     1659..1661)
                     /gene="AHCYL1"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:240619"
     misc_feature    order(1047..1055,1149..1151,1161..1163,1236..1238,
                     1242..1250,1302..1313,1320..1322,1401..1412,1419..1421,
                     1473..1481,1608..1610,1614..1616,1632..1634)
                     /gene="AHCYL1"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:240619"
ORIGIN      
        1 gtgcgtgttt gcgtgcggcg gaggtggtgg cgcgggccgg tcggagctcc gtgttgcttg
       61 cttctggtgc tcctgtcgct gccgtcgctg tccggctgtc ttggacggcc gagcggacga
      121 ggcgccggcc ccagcacctc agcaccggac gcggctcggc gcggggcccc gcctggaggg
      181 tgggcgagcg cgtgtcggag ggtgccgcgc gggtaggcgg gcgggcgccc gtaagggaaa
      241 gaggcggggg cggcgggtca gccgcggccc gggccggccg ggggatgtcg atgcctgacg
      301 cgatgccgct gcccggtgtc ggggaggagc tgaagcaggc caaggagatt gaggacgccg
      361 agaagtactc cttcatggcc accgtcacca aggcgcccaa gaagcaaatc cagtttgctg
      421 atgacatgca ggagttcacc aaattcccca ccaagactgg tcgacgatct ttgtctcgct
      481 ctatttctca gtcctccact gacagctaca gttcagctgc gtcctataca gatagctctg
      541 atgatgaggt ttccccccga gaaaagcagc aaaccaactc caagggcagc agcaatttct
      601 gtgtgaagaa catcaagcag gcagaatttg gacgccggga gattgagatt gcagagcaag
      661 acatgtctgc tctgatttca ctcaggaaac gtgctcaggg ggagaagccc ttggctggtg
      721 ctaaaatagt gggctgtaca catatcacag cccagacagc ggtgttgatt gaaacactct
      781 gtgccctggg ggctcagtgc cgctggtctg cctgcaacat ctactccact cagaatgaag
      841 tggctgcagc actggctgag gctggagttg cagtgtttgc ttggaagggc gagtcagaag
      901 atgacttctg gtggtgtatt gaccgctgtg tgaacatgga tgggtggcaa gccaacatga
      961 tcctggatga tgggggagac ttaacccact gggtttataa gaagtatcca aacgtgttta
     1021 agaagatccg aggcattgtg gaagagagcg tgactggtgt tcacaggctg tatcagctct
     1081 ccaaagctgg gaaactctgt gttccagcca tgaacgtcaa cgattctgtt accaaacaga
     1141 aatttgataa cttatactgc tgccgagaat ccattttaga tggcctgaag aggaccacag
     1201 atgtaatgtt tggtgggaaa caagtggtgg tgtgtggcta tggtgaggtg ggaaagggct
     1261 gctgtgctgc tctcaaggcc ctcggagcaa ttgtctatat cacagaaatt gaccccatct
     1321 gtgctctgca ggcctgcatg gatgggttca gggtggtaaa gctgaatgaa gtcatccggc
     1381 aagttgatgt cgtaataact tgcacaggaa ataagaacgt agtgacacgg gagcatttgg
     1441 atcgcatgaa aaacagttgt atcgtgtgca atatgggcca ctcaaacacg gaaattgatg
     1501 tgaccagcct ccgcactccg gagctgacat gggagcgagt acgttctcag gtggatcatg
     1561 tcatctggcc agatggcaaa cgcgtcgtcc ttctggcaga gggtcgtctg ctcaatctga
     1621 gctgctccac agttcccacc tttgttctgt ccatcacagc tacaacacag gctttggcac
     1681 tgatagaact ctataatgca cctgagggac gatacaaaca agatgtatac ttgcttccta
     1741 agaaaatgga tgagtacgtt gccagcttgc acctgccatc atttgatgcc cacctgacag
     1801 agctgacaga tgaccaagca aaatatctgg gactcaacaa aaacgggcca ttcaaaccca
     1861 attattacag gtaa
//
LOCUS       XM_032646969            1759 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cholinergic receptor nicotinic beta 2
            subunit (CHRNB2), mRNA.
ACCESSION   XM_032646969
VERSION     XM_032646969.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1759
                     /gene="CHRNB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 34 Proteins, and 16%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761217"
     CDS             242..1750
                     /gene="CHRNB2"
                     /codon_start=1
                     /product="neuronal acetylcholine receptor subunit beta-2"
                     /protein_id="XP_032502860.1"
                     /db_xref="GeneID:116761217"
                     /translation="MAWRSGPMALLLSFGLLGLCSGVCGTDTEERLVEHLLDPSRYNK
                     LIRPATNGSELVTVQLMVSLAQLISVHEREQIMTTNVWLTQEWEDYRLTWKPEEFDNM
                     KKVRLPSKHIWLPDVVLYNNADGMYEVSFYSNAVVSYDGSIFWLPPAIYKSACKIEVK
                     HFPFDQQNCTMKFRSWTYDRTEIDLVLKSDVASLDDFTPSGEWDIVALPGRRNENPDD
                     STYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLAL
                     TVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTMAPW
                     VKVIFLEKLPKLLFMQQPRHRCARQRLRLRRRQRGREGTGAVFYREALGADSCTCFVN
                     RASVRGLAGAFGSEPAPAAGPGRSGGPCGCGLREAVDGVRFIADHMRSEDDDQSVSED
                     WKYVAMVIDRLFLWIFVFVCVFGTIGMFLQPLFQNYTTATFLHADHSAPSSK"
     misc_feature    326..1678
                     /gene="CHRNB2"
                     /note="Cation transporter family protein; Region: LIC;
                     cl42365"
                     /db_xref="CDD:455710"
     misc_feature    332..943
                     /gene="CHRNB2"
                     /note="extracellular domain of nicotinic acetylcholine
                     receptor subunit beta 2 (CHRNB2); Region:
                     LGIC_ECD_nAChR_B2; cd19025"
                     /db_xref="CDD:349826"
     misc_feature    order(437..439,443..445,461..466,485..487,551..553,
                     557..559,584..589,593..595,599..604,614..616,620..625,
                     635..643,647..649,677..679,683..685,689..691,701..703,
                     767..769,938..940)
                     /gene="CHRNB2"
                     /note="pentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349826"
     misc_feature    704..748
                     /gene="CHRNB2"
                     /note="Cys-loop [structural motif]; Region: Cys-loop"
                     /db_xref="CDD:349826"
ORIGIN      
        1 ctcagaccgg gataaacgag acgctggttc cttctcgcaa ccagctctct gagccctggg
       61 aaccgccgtg gcggtcggca ctgcagcacc aaaggctgcg agcacaacct gggctcagct
      121 ccagctgggc gcgggcggtg cgggagcggc ttcagcacca cggacagcac cctgcccgcg
      181 gccctccggc ctgcggcgcg cttcggcagc tttaggcgag ccggcgagct atgccagagg
      241 catggcctgg cgctcgggcc ccatggcgct gctcctcagc tttggcctcc tcggcctgtg
      301 ctcaggagtc tgtggtacag acacagagga gcggctggtg gagcatctcc tggatccttc
      361 ccgctacaat aagcttatcc gcccagccac caatggctct gagctggtga cggtacagct
      421 catggtatcc ctggcccagc tcatcagtgt gcatgagcgg gagcagatca tgaccaccaa
      481 tgtctggctg acccaggagt gggaggatta tcgcctcacc tggaagcctg aggaatttga
      541 caacatgaag aaagttcggc tcccttccaa acacatctgg ctcccagatg tggtcctata
      601 caacaatgct gacggcatgt acgaggtgtc cttctattcc aatgccgtgg tctcctatga
      661 tggcagcatc ttctggctgc cgcctgccat ctacaagagc gcatgcaaga tcgaagtaaa
      721 gcacttcccg tttgaccagc agaactgcac catgaagttc cgctcgtgga cctacgaccg
      781 caccgagatc gacctggtgc tcaagagtga cgtggccagc ctggacgact tcacgcccag
      841 tggcgagtgg gacatcgttg cactgcccgg ccggcgcaac gagaacccgg acgactccac
      901 ttatgtggac atcacgtacg acttcatcat ccgccgcaag ccactcttct acaccatcaa
      961 tctcatcatc ccctgcgtgc ttatcacctc actagccatc ctcgtcttct acctaccctc
     1021 cgactgcggc gagaagatga cgctgtgcat ctccgtgctg ctggcgctca ccgtcttcct
     1081 gctgctcatc tccaagatcg tgccgcccac ctccctcgac gtgccgcttg taggcaagta
     1141 cctcatgttc accatggtgc ttgtcacctt ctccatcgtc accagcgtgt gcgtgctcaa
     1201 cgtgcaccac cgctcaccca ccacgcacac catggctccc tgggtcaagg tcatcttcct
     1261 ggagaagctg cccaagctgc tcttcatgca gcagccgcgc caccgctgcg cccgccaacg
     1321 cctgcgcctg cggcggcgcc agcgcgggcg cgagggaacc ggcgccgtct tctaccgcga
     1381 agccctgggg gcagactcct gcacgtgctt cgtcaatcgc gcgtctgtgc ggggcttggc
     1441 tggggccttc ggctcggagc cggcgccggc agccggcccc gggcgctccg gggggccgtg
     1501 tggctgcggc ctccgggagg cggtggacgg cgtgcgcttc atcgcggacc acatgcggag
     1561 tgaggacgac gaccagagcg tgagtgagga ctggaagtat gtcgccatgg tgatcgaccg
     1621 tctgttcctt tggatctttg tcttcgtctg tgtctttggc accattggca tgttcctgca
     1681 gcctctcttc cagaactaca ccactgccac cttcctccac gcagaccact cggctcccag
     1741 ctccaagtga ggccctccc
//
LOCUS       XM_032646974            4976 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 41 member 1
            (SLC41A1), transcript variant X1, mRNA.
ACCESSION   XM_032646974
VERSION     XM_032646974.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4976
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4976
                     /gene="SLC41A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 16 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761228"
     CDS             1034..2578
                     /gene="SLC41A1"
                     /codon_start=1
                     /product="solute carrier family 41 member 1 isoform X1"
                     /protein_id="XP_032502865.1"
                     /db_xref="GeneID:116761228"
                     /translation="MSSKPEPKDVHQLNGTGPTASPCPSDGPGREPLAGTSEFLGPDG
                     AGVEVVVIESRANAKGVREEDALLENGSQSNESDDVSTDRGPAPPSPLKETSFSIGLQ
                     VLFPFLLAGFGTVAAGMVLDIVQHWEVFQKVTEVFILVPALLGLKGNLEMTLASRLST
                     AANIGHMDTPKELWRLITGNMALIQVQATVVGFLASIAAVVFGWIPDGHFSIPHAFLL
                     CASSVATAFIASLVLGMIMIGVIIGSRKIGINPDNVATPIAASLGDLITLALLSGISW
                     GLYLEQDVWQYIYPLVCAFFVALLPVWVVLARRSPATREVLYSGWEPVIIAMAISSVG
                     GLILDKTVSDPNFAGMAVFTPVINGVGGNLVAVQASRISTFLHMNGMPGENSGQAPRR
                     CPSPCTTFFSPDVNSRSARVLFLLVVPGHLVFLYTISCMQGGHTTLTLIFIVFYMTAA
                     LLQVLILLYIADWMVHWMWGRGLDPDNFSIPYLTALGDLLGTGLLALSFHVLWLIGDR
                     DTDVGD"
     misc_feature    1451..1855
                     /gene="SLC41A1"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:460317"
     misc_feature    <1691..>2110
                     /gene="SLC41A1"
                     /note="Carbon starvation protein CstA (peptide/pyruvate
                     transporter) [Energy production and conversion, Amino acid
                     transport and metabolism]; Region: CstA; COG1966"
                     /db_xref="CDD:441569"
     misc_feature    2093..2485
                     /gene="SLC41A1"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:460317"
ORIGIN      
        1 cacgtttgcc cccagcagcc aaccagtcgg gcccaagtcc ccgggcaaga agcgattggg
       61 ggcgagtgag ctcggcccca cggtcccccg tccgggtccc ccagcccccg cccgggagca
      121 aggcggtata tcctgcactc cctccctgac cacctcccct tcgtggaagc ggagcggcgg
      181 cctcgcagta acgcagaggc gaaatgtagc gagccgggtg tcgcggctgg acgctcgcct
      241 tggctggggg tgtggggggc acgccggagg ccgaggagga ctgccgagga ggagtgatga
      301 gaagaggggg atccctgcac cccccaagac cacgggtccc tgctgccaca cgccaggcgc
      361 cccccttcct tcccagcgag gggcaggtgt tccatacaga ttcttgtgac tttaaggacc
      421 agggatttgg gaaggcgcaa ggtcttccca ggaaggaagg acatccctgg aaaaaaggag
      481 agagacagca gacagtgccc tgggaccagc agagcccaag gagctgtggg aagctgaagg
      541 agcccaacca gaggcggggg aaggagccac agccccaggc cgaggctgcc ttctgaaaga
      601 tctcaactca agctacttta atgaaagaag ggctacctca gagggcaccc cagacttagc
      661 tgggctcttc tactctggat ggcccttgct ctgagaagcc tgcactgaga accaaagaag
      721 ttgagaggcc agagaagctt cccccaagca cagcgctggc cagctgggtc aggcttctgc
      781 acccctagtg gccggctgca gtctggtgag gagtttcttg ctcccctcca gctcgtggct
      841 tcagtgcttg atggggctgc ctgttggtgg atcagttttt gcagcacctg ataggagcgg
      901 agagccgtgg gaagaggtcc cgcggcgacc aagcctgggt tcaccccaag actaagttct
      961 ttccagagtt agaaagggag agaaagcaaa caaagagaga agagttcccc ccttctcctc
     1021 ctcccttccc gtcatgtcct ctaagccgga gccgaaggac gtccaccagc tgaacgggac
     1081 tggccctact gcctcaccct gcccttcaga tggccccggg cgagagccct tggccgggac
     1141 ctcagagttc ctggggcctg atggggctgg ggtagaggtg gtggtgattg agtctcgcgc
     1201 caacgccaag ggggttcggg aggaggatgc cctgctggag aacgggagcc agagcaatga
     1261 aagtgacgac gtcagcacag accgtggccc cgcaccaccc tccccgctca aggagacctc
     1321 cttttccatc gggctgcaag tgctgtttcc cttccttctg gcaggctttg ggactgtggc
     1381 tgccggcatg gtgctggaca tcgtacagca ctgggaagtc ttccagaaag tgacagaggt
     1441 cttcatcctg gtgcctgcac tgctggggct taaggggaac ctggaaatga ccctggcatc
     1501 aaggctttcc accgcagcca acatcgggca catggacaca cccaaggagc tctggcggtt
     1561 gatcactggg aatatggccc tcatccaggt gcaggccacg gtggtgggct tcctggcgtc
     1621 catcgcagcc gttgtctttg gctggatccc tgacggccac ttcagtatcc cacatgcctt
     1681 cctgctctgt gccagcagcg tggccacggc cttcattgcc tccctggtac tgggcatgat
     1741 catgattgga gtcatcattg gctctcgcaa gattggaatc aacccagaca atgtggccac
     1801 gcccattgct gccagcctgg gagacctcat caccttggca ctgctctcag gcatcagctg
     1861 gggactctac ctggagcagg atgtctggca atatatctac cccctggtgt gtgccttctt
     1921 cgtggccctg ctgcctgtct gggtggtgct ggctcgacgg agcccagcca caagggaggt
     1981 gttgtactca ggctgggagc ctgtcatcat tgccatggcc atcagcagtg tgggaggcct
     2041 catcttggac aagactgtct cagaccccaa ctttgcaggg atggctgtct tcacacctgt
     2101 gattaatggt gttgggggca atctggtggc tgtgcaggcc agccgcatct ccaccttcct
     2161 ccacatgaac ggaatgccag gggagaactc tgggcaagcc cctcgccgct gccccagccc
     2221 ttgtaccacc ttcttcagtc ccgatgtgaa ttctcgctcg gcccgggtcc tctttctcct
     2281 cgtggtccca ggacatctgg tgttcctcta caccatcagc tgtatgcagg gcgggcacac
     2341 cactcttaca ctcatcttca tcgtcttcta catgacagct gcactgctcc aggtgctgat
     2401 tctcctgtac atcgcagact ggatggtgca ctggatgtgg ggccggggcc tggacccgga
     2461 caacttctcc atcccgtact tgacagccct gggggacctg cttggcactg ggctcctagc
     2521 actcagcttc catgtcctct ggctcattgg ggaccgagac acggatgtcg gggactaagc
     2581 ctggtcactc ggccttctct ccacctctct gcactttctg tgtgaaattt ttttttggtt
     2641 tctcttcccc caccccaccc caccccactc gacactccca cctctttcta ggacttcact
     2701 ttgataccga attctcatta ttttcaatgg gaatttttat acattgagcc aagtttgtag
     2761 agcaagaatt caggcaggac agatggactg agatgaatag tacaagtaga tttttgagac
     2821 aatcaccaag tgcaatttca tggtgggtgc ctccaggtga agtggattgg ggcaggggtt
     2881 tccatctggg atctggggac atttggttta gctttagcaa actcagcctc tgtgagtggg
     2941 ctctggtttg gggggtttgt ctttgttttc ttttttttct tttcggttga acagagggat
     3001 aaatgtcact ctcccttccc ctcccacaca cacatacttt ttctagaaat ggaccaactt
     3061 caaagcacta agcaggagac agatgctcct ggccccaaat aatcctagcc ctattctcta
     3121 ccctgctctc aaaaagaatg aggtgaactc cttaaattgt gtacatgctc cttacccaat
     3181 tgcctgataa ataccaccag ccccctccct ttgatcttct ttccaattga ttgtctcatt
     3241 caggaagata tgagcagtgg cctggtctcc ctgttgaccc atgtctaccc atagtttgcc
     3301 aagatctaca tcctccctgg gcccagagaa ctgattatct ctgttcaacc tttatctcta
     3361 aatgcttcta atcacgacct ttaccagagc ttgccaggtt gggttccaag attagggacg
     3421 gaggatgggt atgtgaaaaa tggttgggag gttgagggca accaggggta tttcactgct
     3481 gctgttctcc tgaagacata atcacgtggt caccttagac cctgtcactt cctgaaatcg
     3541 ctcattcttt catgccatgg aggtcagttt tcctctctct tggcttctgc ccacattcat
     3601 cattcattca ctcattcatt cattcagcaa atacacagcc tccccaagag caggtcttct
     3661 gcaggcacgg tctgaaacat ttgttgagca ctgtctgttg agtacctact acgtgtcagg
     3721 tcctgtttac acaggcactg actagccagc agtaagggaa acacagttct aacctcgcct
     3781 cgttcctaga tataaaggcc atgtgccctt ttcaatccgg cagagagttt ccttgctgta
     3841 tttccatctt tgtcaccgag ccagcttccg cctctagatt ccactcctgg atcccacttg
     3901 tgcacaacac tgaccacggc tagagcccct agccccattg ctcagccact gctgatttcc
     3961 ctaaaccccc cttcctcacc ctcccttccc cccatctcct caccagccac gcaaaagagg
     4021 attcagaact agaaggctgg atatcaacca actgcttcca cttttctctg cccagcacaa
     4081 gactgggaga acactggagt ctctgcacct cccccacacg ttaccgtgaa cagatcagga
     4141 ttctgttgtc cacactcaca tgtacaaatc tgggcgtttg gatgcaggtt tttttctagc
     4201 ctgtctatcc acagctttcc cttaagccct ccgctctgta gcctaaaggg cccctctcca
     4261 ggggaaggct aggcagtgac cctgactttt accactacca tgcctcatcc caggaacttg
     4321 ccctttactt ccagagactt tcctctccct ccatttccac ccaggccacc ttccagagcc
     4381 tagaacttta gaattggaat catagaggtt atctagctgg ggttgtgtcc agcagagttt
     4441 attaacacca gcctggcctt gtttctgctc ttcctcaggc cttctttcgt cttgtcttcc
     4501 acctccaaac ccatttgcac acagactctt atacaggcac caaaaccaac tcttccgccc
     4561 ctgaggccgt gcccctctgg tgtgggccac ccctgcccca gtcactcacc gcttcctcat
     4621 ctctggagtt cagccaggct gccctggggg attctggagt gtcctttgcc acaaaagcaa
     4681 gaaggtaggc gtgccccaac ccctgagtgt gtgagcagag ggaggactgc ggggtgagag
     4741 ggaaagaaaa tggacttcat gactttcgtg gaagatccat ttcttttccc ccgattgcac
     4801 aaactgcatg gacttgtggc ctggctgtga ggagcaacat tggtttacgc ttctatcctt
     4861 aaaaagttac agaactgtgt cctatgacaa ttatttatag tgactataac tgaattgaca
     4921 aatgtcaacg taactgataa attatatttg gtaaaataaa gaggacgttt atttag
//
LOCUS       XM_032646982            4667 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 41 member 1
            (SLC41A1), transcript variant X2, mRNA.
ACCESSION   XM_032646982
VERSION     XM_032646982.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4667
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4667
                     /gene="SLC41A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 15 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116761228"
     CDS             725..2269
                     /gene="SLC41A1"
                     /codon_start=1
                     /product="solute carrier family 41 member 1 isoform X1"
                     /protein_id="XP_032502873.1"
                     /db_xref="GeneID:116761228"
                     /translation="MSSKPEPKDVHQLNGTGPTASPCPSDGPGREPLAGTSEFLGPDG
                     AGVEVVVIESRANAKGVREEDALLENGSQSNESDDVSTDRGPAPPSPLKETSFSIGLQ
                     VLFPFLLAGFGTVAAGMVLDIVQHWEVFQKVTEVFILVPALLGLKGNLEMTLASRLST
                     AANIGHMDTPKELWRLITGNMALIQVQATVVGFLASIAAVVFGWIPDGHFSIPHAFLL
                     CASSVATAFIASLVLGMIMIGVIIGSRKIGINPDNVATPIAASLGDLITLALLSGISW
                     GLYLEQDVWQYIYPLVCAFFVALLPVWVVLARRSPATREVLYSGWEPVIIAMAISSVG
                     GLILDKTVSDPNFAGMAVFTPVINGVGGNLVAVQASRISTFLHMNGMPGENSGQAPRR
                     CPSPCTTFFSPDVNSRSARVLFLLVVPGHLVFLYTISCMQGGHTTLTLIFIVFYMTAA
                     LLQVLILLYIADWMVHWMWGRGLDPDNFSIPYLTALGDLLGTGLLALSFHVLWLIGDR
                     DTDVGD"
     misc_feature    1142..1546
                     /gene="SLC41A1"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:460317"
     misc_feature    <1382..>1801
                     /gene="SLC41A1"
                     /note="Carbon starvation protein CstA (peptide/pyruvate
                     transporter) [Energy production and conversion, Amino acid
                     transport and metabolism]; Region: CstA; COG1966"
                     /db_xref="CDD:441569"
     misc_feature    1784..2176
                     /gene="SLC41A1"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:460317"
ORIGIN      
        1 gcgcttggag gaatgcggat tctggcggaa gcgcgaggag actagccagc aggagaggag
       61 ctgtgtccga gaacaaggtg ttccatacag attcttgtga ctttaaggac cagggatttg
      121 ggaaggcgca aggtcttccc aggaaggaag gacatccctg gaaaaaagga gagagacagc
      181 agacagtgcc ctgggaccag cagagcccaa ggagctgtgg gaagctgaag gagcccaacc
      241 agaggcgggg gaaggagcca cagccccagg ccgaggctgc cttctgaaag atctcaactc
      301 aagctacttt aatgaaagaa gggctacctc agagggcacc ccagacttag ctgggctctt
      361 ctactctgga tggcccttgc tctgagaagc ctgcactgag aaccaaagaa gttgagaggc
      421 cagagaagct tcccccaagc acagcgctgg ccagctgggt caggcttctg cacccctagt
      481 ggccggctgc agtctggtga ggagtttctt gctcccctcc agctcgtggc ttcagtgctt
      541 gatggggctg cctgttggtg gatcagtttt tgcagcacct gataggagcg gagagccgtg
      601 ggaagaggtc ccgcggcgac caagcctggg ttcaccccaa gactaagttc tttccagagt
      661 tagaaaggga gagaaagcaa acaaagagag aagagttccc cccttctcct cctcccttcc
      721 cgtcatgtcc tctaagccgg agccgaagga cgtccaccag ctgaacggga ctggccctac
      781 tgcctcaccc tgcccttcag atggccccgg gcgagagccc ttggccggga cctcagagtt
      841 cctggggcct gatggggctg gggtagaggt ggtggtgatt gagtctcgcg ccaacgccaa
      901 gggggttcgg gaggaggatg ccctgctgga gaacgggagc cagagcaatg aaagtgacga
      961 cgtcagcaca gaccgtggcc ccgcaccacc ctccccgctc aaggagacct ccttttccat
     1021 cgggctgcaa gtgctgtttc ccttccttct ggcaggcttt gggactgtgg ctgccggcat
     1081 ggtgctggac atcgtacagc actgggaagt cttccagaaa gtgacagagg tcttcatcct
     1141 ggtgcctgca ctgctggggc ttaaggggaa cctggaaatg accctggcat caaggctttc
     1201 caccgcagcc aacatcgggc acatggacac acccaaggag ctctggcggt tgatcactgg
     1261 gaatatggcc ctcatccagg tgcaggccac ggtggtgggc ttcctggcgt ccatcgcagc
     1321 cgttgtcttt ggctggatcc ctgacggcca cttcagtatc ccacatgcct tcctgctctg
     1381 tgccagcagc gtggccacgg ccttcattgc ctccctggta ctgggcatga tcatgattgg
     1441 agtcatcatt ggctctcgca agattggaat caacccagac aatgtggcca cgcccattgc
     1501 tgccagcctg ggagacctca tcaccttggc actgctctca ggcatcagct ggggactcta
     1561 cctggagcag gatgtctggc aatatatcta ccccctggtg tgtgccttct tcgtggccct
     1621 gctgcctgtc tgggtggtgc tggctcgacg gagcccagcc acaagggagg tgttgtactc
     1681 aggctgggag cctgtcatca ttgccatggc catcagcagt gtgggaggcc tcatcttgga
     1741 caagactgtc tcagacccca actttgcagg gatggctgtc ttcacacctg tgattaatgg
     1801 tgttgggggc aatctggtgg ctgtgcaggc cagccgcatc tccaccttcc tccacatgaa
     1861 cggaatgcca ggggagaact ctgggcaagc ccctcgccgc tgccccagcc cttgtaccac
     1921 cttcttcagt cccgatgtga attctcgctc ggcccgggtc ctctttctcc tcgtggtccc
     1981 aggacatctg gtgttcctct acaccatcag ctgtatgcag ggcgggcaca ccactcttac
     2041 actcatcttc atcgtcttct acatgacagc tgcactgctc caggtgctga ttctcctgta
     2101 catcgcagac tggatggtgc actggatgtg gggccggggc ctggacccgg acaacttctc
     2161 catcccgtac ttgacagccc tgggggacct gcttggcact gggctcctag cactcagctt
     2221 ccatgtcctc tggctcattg gggaccgaga cacggatgtc ggggactaag cctggtcact
     2281 cggccttctc tccacctctc tgcactttct gtgtgaaatt tttttttggt ttctcttccc
     2341 ccaccccacc ccaccccact cgacactccc acctctttct aggacttcac tttgataccg
     2401 aattctcatt attttcaatg ggaattttta tacattgagc caagtttgta gagcaagaat
     2461 tcaggcagga cagatggact gagatgaata gtacaagtag atttttgaga caatcaccaa
     2521 gtgcaatttc atggtgggtg cctccaggtg aagtggattg gggcaggggt ttccatctgg
     2581 gatctgggga catttggttt agctttagca aactcagcct ctgtgagtgg gctctggttt
     2641 ggggggtttg tctttgtttt cttttttttc ttttcggttg aacagaggga taaatgtcac
     2701 tctcccttcc cctcccacac acacatactt tttctagaaa tggaccaact tcaaagcact
     2761 aagcaggaga cagatgctcc tggccccaaa taatcctagc cctattctct accctgctct
     2821 caaaaagaat gaggtgaact ccttaaattg tgtacatgct ccttacccaa ttgcctgata
     2881 aataccacca gccccctccc tttgatcttc tttccaattg attgtctcat tcaggaagat
     2941 atgagcagtg gcctggtctc cctgttgacc catgtctacc catagtttgc caagatctac
     3001 atcctccctg ggcccagaga actgattatc tctgttcaac ctttatctct aaatgcttct
     3061 aatcacgacc tttaccagag cttgccaggt tgggttccaa gattagggac ggaggatggg
     3121 tatgtgaaaa atggttggga ggttgagggc aaccaggggt atttcactgc tgctgttctc
     3181 ctgaagacat aatcacgtgg tcaccttaga ccctgtcact tcctgaaatc gctcattctt
     3241 tcatgccatg gaggtcagtt ttcctctctc ttggcttctg cccacattca tcattcattc
     3301 actcattcat tcattcagca aatacacagc ctccccaaga gcaggtcttc tgcaggcacg
     3361 gtctgaaaca tttgttgagc actgtctgtt gagtacctac tacgtgtcag gtcctgttta
     3421 cacaggcact gactagccag cagtaaggga aacacagttc taacctcgcc tcgttcctag
     3481 atataaaggc catgtgccct tttcaatccg gcagagagtt tccttgctgt atttccatct
     3541 ttgtcaccga gccagcttcc gcctctagat tccactcctg gatcccactt gtgcacaaca
     3601 ctgaccacgg ctagagcccc tagccccatt gctcagccac tgctgatttc cctaaacccc
     3661 ccttcctcac cctcccttcc ccccatctcc tcaccagcca cgcaaaagag gattcagaac
     3721 tagaaggctg gatatcaacc aactgcttcc acttttctct gcccagcaca agactgggag
     3781 aacactggag tctctgcacc tcccccacac gttaccgtga acagatcagg attctgttgt
     3841 ccacactcac atgtacaaat ctgggcgttt ggatgcaggt ttttttctag cctgtctatc
     3901 cacagctttc ccttaagccc tccgctctgt agcctaaagg gcccctctcc aggggaaggc
     3961 taggcagtga ccctgacttt taccactacc atgcctcatc ccaggaactt gccctttact
     4021 tccagagact ttcctctccc tccatttcca cccaggccac cttccagagc ctagaacttt
     4081 agaattggaa tcatagaggt tatctagctg gggttgtgtc cagcagagtt tattaacacc
     4141 agcctggcct tgtttctgct cttcctcagg ccttctttcg tcttgtcttc cacctccaaa
     4201 cccatttgca cacagactct tatacaggca ccaaaaccaa ctcttccgcc cctgaggccg
     4261 tgcccctctg gtgtgggcca cccctgcccc agtcactcac cgcttcctca tctctggagt
     4321 tcagccaggc tgccctgggg gattctggag tgtcctttgc cacaaaagca agaaggtagg
     4381 cgtgccccaa cccctgagtg tgtgagcaga gggaggactg cggggtgaga gggaaagaaa
     4441 atggacttca tgactttcgt ggaagatcca tttcttttcc cccgattgca caaactgcat
     4501 ggacttgtgg cctggctgtg aggagcaaca ttggtttacg cttctatcct taaaaagtta
     4561 cagaactgtg tcctatgaca attatttata gtgactataa ctgaattgac aaatgtcaac
     4621 gtaactgata aattatattt ggtaaaataa agaggacgtt tatttag
//
LOCUS       XM_032646988            3119 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 41 member 1
            (SLC41A1), transcript variant X3, mRNA.
ACCESSION   XM_032646988
VERSION     XM_032646988.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3119
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3119
                     /gene="SLC41A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 16 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116761228"
     CDS             1034..2578
                     /gene="SLC41A1"
                     /codon_start=1
                     /product="solute carrier family 41 member 1 isoform X1"
                     /protein_id="XP_032502879.1"
                     /db_xref="GeneID:116761228"
                     /translation="MSSKPEPKDVHQLNGTGPTASPCPSDGPGREPLAGTSEFLGPDG
                     AGVEVVVIESRANAKGVREEDALLENGSQSNESDDVSTDRGPAPPSPLKETSFSIGLQ
                     VLFPFLLAGFGTVAAGMVLDIVQHWEVFQKVTEVFILVPALLGLKGNLEMTLASRLST
                     AANIGHMDTPKELWRLITGNMALIQVQATVVGFLASIAAVVFGWIPDGHFSIPHAFLL
                     CASSVATAFIASLVLGMIMIGVIIGSRKIGINPDNVATPIAASLGDLITLALLSGISW
                     GLYLEQDVWQYIYPLVCAFFVALLPVWVVLARRSPATREVLYSGWEPVIIAMAISSVG
                     GLILDKTVSDPNFAGMAVFTPVINGVGGNLVAVQASRISTFLHMNGMPGENSGQAPRR
                     CPSPCTTFFSPDVNSRSARVLFLLVVPGHLVFLYTISCMQGGHTTLTLIFIVFYMTAA
                     LLQVLILLYIADWMVHWMWGRGLDPDNFSIPYLTALGDLLGTGLLALSFHVLWLIGDR
                     DTDVGD"
     misc_feature    1451..1855
                     /gene="SLC41A1"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:460317"
     misc_feature    <1691..>2110
                     /gene="SLC41A1"
                     /note="Carbon starvation protein CstA (peptide/pyruvate
                     transporter) [Energy production and conversion, Amino acid
                     transport and metabolism]; Region: CstA; COG1966"
                     /db_xref="CDD:441569"
     misc_feature    2093..2485
                     /gene="SLC41A1"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:460317"
ORIGIN      
        1 cacgtttgcc cccagcagcc aaccagtcgg gcccaagtcc ccgggcaaga agcgattggg
       61 ggcgagtgag ctcggcccca cggtcccccg tccgggtccc ccagcccccg cccgggagca
      121 aggcggtata tcctgcactc cctccctgac cacctcccct tcgtggaagc ggagcggcgg
      181 cctcgcagta acgcagaggc gaaatgtagc gagccgggtg tcgcggctgg acgctcgcct
      241 tggctggggg tgtggggggc acgccggagg ccgaggagga ctgccgagga ggagtgatga
      301 gaagaggggg atccctgcac cccccaagac cacgggtccc tgctgccaca cgccaggcgc
      361 cccccttcct tcccagcgag gggcaggtgt tccatacaga ttcttgtgac tttaaggacc
      421 agggatttgg gaaggcgcaa ggtcttccca ggaaggaagg acatccctgg aaaaaaggag
      481 agagacagca gacagtgccc tgggaccagc agagcccaag gagctgtggg aagctgaagg
      541 agcccaacca gaggcggggg aaggagccac agccccaggc cgaggctgcc ttctgaaaga
      601 tctcaactca agctacttta atgaaagaag ggctacctca gagggcaccc cagacttagc
      661 tgggctcttc tactctggat ggcccttgct ctgagaagcc tgcactgaga accaaagaag
      721 ttgagaggcc agagaagctt cccccaagca cagcgctggc cagctgggtc aggcttctgc
      781 acccctagtg gccggctgca gtctggtgag gagtttcttg ctcccctcca gctcgtggct
      841 tcagtgcttg atggggctgc ctgttggtgg atcagttttt gcagcacctg ataggagcgg
      901 agagccgtgg gaagaggtcc cgcggcgacc aagcctgggt tcaccccaag actaagttct
      961 ttccagagtt agaaagggag agaaagcaaa caaagagaga agagttcccc ccttctcctc
     1021 ctcccttccc gtcatgtcct ctaagccgga gccgaaggac gtccaccagc tgaacgggac
     1081 tggccctact gcctcaccct gcccttcaga tggccccggg cgagagccct tggccgggac
     1141 ctcagagttc ctggggcctg atggggctgg ggtagaggtg gtggtgattg agtctcgcgc
     1201 caacgccaag ggggttcggg aggaggatgc cctgctggag aacgggagcc agagcaatga
     1261 aagtgacgac gtcagcacag accgtggccc cgcaccaccc tccccgctca aggagacctc
     1321 cttttccatc gggctgcaag tgctgtttcc cttccttctg gcaggctttg ggactgtggc
     1381 tgccggcatg gtgctggaca tcgtacagca ctgggaagtc ttccagaaag tgacagaggt
     1441 cttcatcctg gtgcctgcac tgctggggct taaggggaac ctggaaatga ccctggcatc
     1501 aaggctttcc accgcagcca acatcgggca catggacaca cccaaggagc tctggcggtt
     1561 gatcactggg aatatggccc tcatccaggt gcaggccacg gtggtgggct tcctggcgtc
     1621 catcgcagcc gttgtctttg gctggatccc tgacggccac ttcagtatcc cacatgcctt
     1681 cctgctctgt gccagcagcg tggccacggc cttcattgcc tccctggtac tgggcatgat
     1741 catgattgga gtcatcattg gctctcgcaa gattggaatc aacccagaca atgtggccac
     1801 gcccattgct gccagcctgg gagacctcat caccttggca ctgctctcag gcatcagctg
     1861 gggactctac ctggagcagg atgtctggca atatatctac cccctggtgt gtgccttctt
     1921 cgtggccctg ctgcctgtct gggtggtgct ggctcgacgg agcccagcca caagggaggt
     1981 gttgtactca ggctgggagc ctgtcatcat tgccatggcc atcagcagtg tgggaggcct
     2041 catcttggac aagactgtct cagaccccaa ctttgcaggg atggctgtct tcacacctgt
     2101 gattaatggt gttgggggca atctggtggc tgtgcaggcc agccgcatct ccaccttcct
     2161 ccacatgaac ggaatgccag gggagaactc tgggcaagcc cctcgccgct gccccagccc
     2221 ttgtaccacc ttcttcagtc ccgatgtgaa ttctcgctcg gcccgggtcc tctttctcct
     2281 cgtggtccca ggacatctgg tgttcctcta caccatcagc tgtatgcagg gcgggcacac
     2341 cactcttaca ctcatcttca tcgtcttcta catgacagct gcactgctcc aggtgctgat
     2401 tctcctgtac atcgcagact ggatggtgca ctggatgtgg ggccggggcc tggacccgga
     2461 caacttctcc atcccgtact tgacagccct gggggacctg cttggcactg ggctcctagc
     2521 actcagcttc catgtcctct ggctcattgg ggaccgagac acggatgtcg gggactaagc
     2581 ctggtcactc ggccttctct ccacctctct gcactttctg tgccttcttt cgtcttgtct
     2641 tccacctcca aacccatttg cacacagact cttatacagg caccaaaacc aactcttccg
     2701 cccctgaggc cgtgcccctc tggtgtgggc cacccctgcc ccagtcactc accgcttcct
     2761 catctctgga gttcagccag gctgccctgg gggattctgg agtgtccttt gccacaaaag
     2821 caagaaggta ggcgtgcccc aacccctgag tgtgtgagca gagggaggac tgcggggtga
     2881 gagggaaaga aaatggactt catgactttc gtggaagatc catttctttt cccccgattg
     2941 cacaaactgc atggacttgt ggcctggctg tgaggagcaa cattggttta cgcttctatc
     3001 cttaaaaagt tacagaactg tgtcctatga caattattta tagtgactat aactgaattg
     3061 acaaatgtca acgtaactga taaattatat ttggtaaaat aaagaggacg tttatttag
//
LOCUS       XR_004351928            4846 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 41 member 1
            (SLC41A1), transcript variant X4, misc_RNA.
ACCESSION   XR_004351928
VERSION     XR_004351928.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4846
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4846
                     /gene="SLC41A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 16
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761228"
     misc_RNA        1..4846
                     /gene="SLC41A1"
                     /product="solute carrier family 41 member 1, transcript
                     variant X4"
                     /db_xref="GeneID:116761228"
ORIGIN      
        1 cacgtttgcc cccagcagcc aaccagtcgg gcccaagtcc ccgggcaaga agcgattggg
       61 ggcgagtgag ctcggcccca cggtcccccg tccgggtccc ccagcccccg cccgggagca
      121 aggcggtata tcctgcactc cctccctgac cacctcccct tcgtggaagc ggagcggcgg
      181 cctcgcagta acgcagaggc gaaatgtagc gagccgggtg tcgcggctgg acgctcgcct
      241 tggctggggg tgtggggggc acgccggagg ccgaggagga ctgccgagga ggagtgatga
      301 gaagaggggg atccctgcac cccccaagac cacgggtccc tgctgccaca cgccaggcgc
      361 cccccttcct tcccagcgag gggcaggtgt tccatacaga ttcttgtgac tttaaggacc
      421 agggatttgg gaaggcgcaa ggtcttccca ggaaggaagg acatccctgg aaaaaaggag
      481 agagacagca gacagtgccc tgggaccagc agagcccaag gagctgtggg aagctgaagg
      541 agcccaacca gaggcggggg aaggagccac agccccaggc cgaggctgcc ttctgaaaga
      601 tctcaactca agctacttta atgaaagaag ggctacctca gagggcaccc cagacttagc
      661 tgggctcttc tactctggat ggcccttgct ctgagaagcc tgcactgaga accaaagaag
      721 ttgagaggcc agagaagctt cccccaagca cagcgctggc cagctgggtc aggcttctgc
      781 acccctagtg gccggctgca gtctggtgag gagtttcttg ctcccctcca gctcgtggct
      841 tcagtgcttg atggggctgc ctgttggtgg atcagttttt gcagcacctg ataggagcgg
      901 agagccgtgg gaagaggtcc cgcggcgacc aagcctgggt tcaccccaag actaagttct
      961 ttccagagtt agaaagggag agaaagcaaa caaagagaga agagttcccc ccttctcctc
     1021 ctcccttccc gtcatgtcct ctaagccgga gccgaaggac gtccaccagc tgaacgggac
     1081 tggccctact gcctcaccct gcccttcaga tggccccggg cgagagccct tggccgggac
     1141 ctcagagttc ctggggcctg atggggctgg ggtagaggtg gtggtgattg agtctcgcgc
     1201 caacgccaag ggggttcggg aggaggatgc cctgctggag aacgggagcc agagcaatga
     1261 aagtgacgac gtcagcacag accgtggccc cgcaccaccc tccccgctca aggagacctc
     1321 cttttccatc gggctgcaag tgctgtttcc cttccttctg gcaggctttg ggactgtggc
     1381 tgccggcatg gtgctggaca tcgtacagca ctgggaagtc ttccagaaag tgacagaggt
     1441 cttcatcctg gtgcctgcac tgctggggct taaggggaac ctggaaatga ccctggcatc
     1501 aaggctttcc accgcagcca acatcgggca catggacaca cccaaggagc tctggcggtt
     1561 gatcactggg aatatggccc tcatccaggt gcaggccacg gtggtgggct tcctggcgtc
     1621 catcgcagcc gttgtctttg gctggatccc tgacggccac ttcagtatcc cacatgcctt
     1681 cctgctctgt gccagcagcg tggccacggc cttcattgcc tccctggtac tgggcatgat
     1741 catgattgga gtcatcattg gctctcgcaa gattggaatc aacccagaca atgtggccac
     1801 gcccattgct gccagcctgg gagacctcat caccttggca ctgctctcag gcatcagctg
     1861 gggactctac ctggagcagg atgtctggca atatatctac cccctggtgt gtgccttctt
     1921 cgtggccctg ctgcctgtct gggtggtgct ggctcgacgg agcccagcca caagggaggt
     1981 gttgtactca ggctgggagc ctgtcatcat tgccatggcc atcagcagtg tgggaggcct
     2041 catcttggac aagactgtct cagaccccaa ctttgcaggg atggctgtct tcacacctgt
     2101 gattaatggt gttgggggca atctggtggc tgtgcaggcc agccgcatct ccaccttcct
     2161 ccacatgaac ggaatgccag gggagaactc tgggcaagcc cctcgccgct gccccagccc
     2221 ttgtaccacc ttcttcagtc ccgatgtgaa ttctcgctcg gcccgggtcc tctttctcct
     2281 cgtggtccca ggacatctgg tgttcctcta caccatcagc tgtatgcagg gcgggcacac
     2341 cactcttaca ctcatcttca tcgtcttcta catgacagct gcactgctcc aggtgctgat
     2401 tctcctgtac atcgcagact ggatggtgca ctggatgtgg ggccggggcc tggacccgga
     2461 caacttctcc atcccgtact tgacagccct gggggacctg cttggcactg ggctcctagc
     2521 actcagcttc catgtcctct ggctcattgg ggaccgagac acggatgtcg gggactaagc
     2581 ctggtcactc ggccttctct ccacctctct gcactttctg tgtgaaattt ttttttggtt
     2641 tctcttcccc caccccaccc caccccactc gacactccca cctctttcta ggacttcact
     2701 ttgataccga attctcatta ttttcaatgg gaatttttat acattgagcc aagtttgtag
     2761 agcaagaatt caggcaggac agatggactg agatgaatag tacaagtaga tttttgagac
     2821 aatcaccaag tgcaatttca tggtgggtgc ctccaggtga agtggattgg ggcaggggtt
     2881 tccatctggg atctggggac atttggttta gctttagcaa actcagcctc tgtgagtggg
     2941 ctctggtttg gggggtttgt ctttgttttc ttttttttct tttcggttga acagagggat
     3001 aaatgtcact ctcccttccc ctcccacaca cacatacttt ttctagaaat ggaccaactt
     3061 caaagcacta agcaggagac agatgctcct ggccccaaat aatcctagcc ctattctcta
     3121 ccctgctctc aaaaagaatg aggtgaactc cttaaattgt gtacatgctc cttacccaat
     3181 tgcctgataa ataccaccag ccccctccct ttgatcttct ttccaattga ttgtctcatt
     3241 caggaagata tgagcagtgg cctggtctcc ctgttgaccc atgtctaccc atagtttgcc
     3301 aagatctaca tcctccctgg gcccagagaa ctgattatct ctgttcaacc tttatctcta
     3361 aatgcttcta atcacgacct ttaccagagc ttgccaggtt gggttccaag attagggacg
     3421 gaggatgggt atgtgaaaaa tggttgggag gttgagggca accaggggta tttcactgct
     3481 gctgttctcc tgaagacata atcacgtggt caccttagac cctgtcactt cctgaaatcg
     3541 ctcattcttt catgccatgg aggtcagttt tcctctctct tggcttctgc ccacattcat
     3601 cattcattca ctcattcatt cattcagcaa atacacagcc tccccaagag caggtcttct
     3661 gcaggcacgg tctgaaacat ttgttgagca ctgtctgttg agtacctact acgtgtcagg
     3721 tcctgtttac acaggcactg actagccagc agtaagggaa acacagttct aacctcgcct
     3781 cgttcctaga tataaaggcc atgtgccctt ttcaatccgg cagagagttt ccttgctgta
     3841 tttccatctt tgtcaccgag ccagcttccg cctctagatt ccactcctgg atcccacttg
     3901 tgcacaacac tgaccacggc tagagcccct agccccattg ctcagccact gctgatttcc
     3961 ctaaaccccc cttcctcacc ctcccttccc cccatctcct caccagccac gcaaaagagg
     4021 attcagaact agaaggctgg atatcaacca actgcttcca cttttctctg cccagcacaa
     4081 gactgggaga acactggagt ctctgcacct cccccacacg ttaccgtgaa cagatcagga
     4141 ttctgttgtc cacactcaca tgtacaaatc tgggcgtttg gatgcaggtt tttttctagc
     4201 ctgtctatcc acagctttcc cttaagccct ccgctctgta gcctaaaggg cccctctcca
     4261 ggggaaggct aggcagtgac cctgactttt accactacca tgcctcatcc caggaacttg
     4321 ccctttactt ccagagactt tcctctccct ccatttccac ccaggccacc ttccagagcc
     4381 tagaacttta gaattggaat catagaggtt atctagctgg ggttgtgtcc agcagagttt
     4441 attaacacca gcctggcctt gtttctgctc ttcctcaggc cttctttcgt cttgtcttcc
     4501 acctccaaac ccatttgcac acagactctt atacaggcac caaaaccaac tcttccgccc
     4561 ctgaggccgt gcccctctgg tgtgggccac ccctgcccca gtcactcacc gcttcctcat
     4621 ctctggagtt cagccaggct gccctggggg attctggagt gtcctttgcc acaaaagcaa
     4681 gaaggcaaga aactgaggcc cagagaggtt aagtgtcttg cccaaggtca tagattcaca
     4741 cccaggattc tctcagcccg gtgccttccc accatgcctg gagccagatg aaagaggtgt
     4801 ccaaggtgta cctgtataga gaacattaaa acgtactgaa atggtc
//
LOCUS       XM_032646997            4596 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 41 member 1
            (SLC41A1), transcript variant X5, mRNA.
ACCESSION   XM_032646997
VERSION     XM_032646997.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4596
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4596
                     /gene="SLC41A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761228"
     CDS             726..2198
                     /gene="SLC41A1"
                     /codon_start=1
                     /product="solute carrier family 41 member 1 isoform X2"
                     /protein_id="XP_032502888.1"
                     /db_xref="GeneID:116761228"
                     /translation="MSSKPEPKDVHQLNGTGPTASPCPSDGPGREPLAGTSEFLGPDG
                     AGVEVVVIESRANAKGVREEDALLENGSQSNESDDVSTDRGPAPPSPLKETSFSIGLQ
                     VLFPFLLAGFGTVAAGMVLDIVQHWEVFQKVTEVFILVPALLGLKGNLEMTLASRLST
                     AVQATVVGFLASIAAVVFGWIPDGHFSIPHAFLLCASSVATAFIASLVLGMIMIGVII
                     GSRKIGINPDNVATPIAASLGDLITLALLSGISWGLYLEQDVWQYIYPLVCAFFVALL
                     PVWVVLARRSPATREVLYSGWEPVIIAMAISSVGGLILDKTVSDPNFAGMAVFTPVIN
                     GVGGNLVAVQASRISTFLHMNGMPGENSGQAPRRCPSPCTTFFSPDVNSRSARVLFLL
                     VVPGHLVFLYTISCMQGGHTTLTLIFIVFYMTAALLQVLILLYIADWMVHWMWGRGLD
                     PDNFSIPYLTALGDLLGTGLLALSFHVLWLIGDRDTDVGD"
     misc_feature    1143..1475
                     /gene="SLC41A1"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:460317"
     misc_feature    <1311..>1730
                     /gene="SLC41A1"
                     /note="Carbon starvation protein CstA (peptide/pyruvate
                     transporter) [Energy production and conversion, Amino acid
                     transport and metabolism]; Region: CstA; COG1966"
                     /db_xref="CDD:441569"
     misc_feature    1713..2105
                     /gene="SLC41A1"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:460317"
ORIGIN      
        1 cgcgcttgga ggaatgcgga ttctggcgga agcgcgagga gactagccag caggagagga
       61 gctgtgtccg agaacaaggt gttccataca gattcttgtg actttaagga ccagggattt
      121 gggaaggcgc aaggtcttcc caggaaggaa ggacatccct ggaaaaaagg agagagacag
      181 cagacagtgc cctgggacca gcagagccca aggagctgtg ggaagctgaa ggagcccaac
      241 cagaggcggg ggaaggagcc acagccccag gccgaggctg ccttctgaaa gatctcaact
      301 caagctactt taatgaaaga agggctacct cagagggcac cccagactta gctgggctct
      361 tctactctgg atggcccttg ctctgagaag cctgcactga gaaccaaaga agttgagagg
      421 ccagagaagc ttcccccaag cacagcgctg gccagctggg tcaggcttct gcacccctag
      481 tggccggctg cagtctggtg aggagtttct tgctcccctc cagctcgtgg cttcagtgct
      541 tgatggggct gcctgttggt ggatcagttt ttgcagcacc tgataggagc ggagagccgt
      601 gggaagaggt cccgcggcga ccaagcctgg gttcacccca agactaagtt ctttccagag
      661 ttagaaaggg agagaaagca aacaaagaga gaagagttcc ccccttctcc tcctcccttc
      721 ccgtcatgtc ctctaagccg gagccgaagg acgtccacca gctgaacggg actggcccta
      781 ctgcctcacc ctgcccttca gatggccccg ggcgagagcc cttggccggg acctcagagt
      841 tcctggggcc tgatggggct ggggtagagg tggtggtgat tgagtctcgc gccaacgcca
      901 agggggttcg ggaggaggat gccctgctgg agaacgggag ccagagcaat gaaagtgacg
      961 acgtcagcac agaccgtggc cccgcaccac cctccccgct caaggagacc tccttttcca
     1021 tcgggctgca agtgctgttt cccttccttc tggcaggctt tgggactgtg gctgccggca
     1081 tggtgctgga catcgtacag cactgggaag tcttccagaa agtgacagag gtcttcatcc
     1141 tggtgcctgc actgctgggg cttaagggga acctggaaat gaccctggca tcaaggcttt
     1201 ccaccgcagt gcaggccacg gtggtgggct tcctggcgtc catcgcagcc gttgtctttg
     1261 gctggatccc tgacggccac ttcagtatcc cacatgcctt cctgctctgt gccagcagcg
     1321 tggccacggc cttcattgcc tccctggtac tgggcatgat catgattgga gtcatcattg
     1381 gctctcgcaa gattggaatc aacccagaca atgtggccac gcccattgct gccagcctgg
     1441 gagacctcat caccttggca ctgctctcag gcatcagctg gggactctac ctggagcagg
     1501 atgtctggca atatatctac cccctggtgt gtgccttctt cgtggccctg ctgcctgtct
     1561 gggtggtgct ggctcgacgg agcccagcca caagggaggt gttgtactca ggctgggagc
     1621 ctgtcatcat tgccatggcc atcagcagtg tgggaggcct catcttggac aagactgtct
     1681 cagaccccaa ctttgcaggg atggctgtct tcacacctgt gattaatggt gttgggggca
     1741 atctggtggc tgtgcaggcc agccgcatct ccaccttcct ccacatgaac ggaatgccag
     1801 gggagaactc tgggcaagcc cctcgccgct gccccagccc ttgtaccacc ttcttcagtc
     1861 ccgatgtgaa ttctcgctcg gcccgggtcc tctttctcct cgtggtccca ggacatctgg
     1921 tgttcctcta caccatcagc tgtatgcagg gcgggcacac cactcttaca ctcatcttca
     1981 tcgtcttcta catgacagct gcactgctcc aggtgctgat tctcctgtac atcgcagact
     2041 ggatggtgca ctggatgtgg ggccggggcc tggacccgga caacttctcc atcccgtact
     2101 tgacagccct gggggacctg cttggcactg ggctcctagc actcagcttc catgtcctct
     2161 ggctcattgg ggaccgagac acggatgtcg gggactaagc ctggtcactc ggccttctct
     2221 ccacctctct gcactttctg tgtgaaattt ttttttggtt tctcttcccc caccccaccc
     2281 caccccactc gacactccca cctctttcta ggacttcact ttgataccga attctcatta
     2341 ttttcaatgg gaatttttat acattgagcc aagtttgtag agcaagaatt caggcaggac
     2401 agatggactg agatgaatag tacaagtaga tttttgagac aatcaccaag tgcaatttca
     2461 tggtgggtgc ctccaggtga agtggattgg ggcaggggtt tccatctggg atctggggac
     2521 atttggttta gctttagcaa actcagcctc tgtgagtggg ctctggtttg gggggtttgt
     2581 ctttgttttc ttttttttct tttcggttga acagagggat aaatgtcact ctcccttccc
     2641 ctcccacaca cacatacttt ttctagaaat ggaccaactt caaagcacta agcaggagac
     2701 agatgctcct ggccccaaat aatcctagcc ctattctcta ccctgctctc aaaaagaatg
     2761 aggtgaactc cttaaattgt gtacatgctc cttacccaat tgcctgataa ataccaccag
     2821 ccccctccct ttgatcttct ttccaattga ttgtctcatt caggaagata tgagcagtgg
     2881 cctggtctcc ctgttgaccc atgtctaccc atagtttgcc aagatctaca tcctccctgg
     2941 gcccagagaa ctgattatct ctgttcaacc tttatctcta aatgcttcta atcacgacct
     3001 ttaccagagc ttgccaggtt gggttccaag attagggacg gaggatgggt atgtgaaaaa
     3061 tggttgggag gttgagggca accaggggta tttcactgct gctgttctcc tgaagacata
     3121 atcacgtggt caccttagac cctgtcactt cctgaaatcg ctcattcttt catgccatgg
     3181 aggtcagttt tcctctctct tggcttctgc ccacattcat cattcattca ctcattcatt
     3241 cattcagcaa atacacagcc tccccaagag caggtcttct gcaggcacgg tctgaaacat
     3301 ttgttgagca ctgtctgttg agtacctact acgtgtcagg tcctgtttac acaggcactg
     3361 actagccagc agtaagggaa acacagttct aacctcgcct cgttcctaga tataaaggcc
     3421 atgtgccctt ttcaatccgg cagagagttt ccttgctgta tttccatctt tgtcaccgag
     3481 ccagcttccg cctctagatt ccactcctgg atcccacttg tgcacaacac tgaccacggc
     3541 tagagcccct agccccattg ctcagccact gctgatttcc ctaaaccccc cttcctcacc
     3601 ctcccttccc cccatctcct caccagccac gcaaaagagg attcagaact agaaggctgg
     3661 atatcaacca actgcttcca cttttctctg cccagcacaa gactgggaga acactggagt
     3721 ctctgcacct cccccacacg ttaccgtgaa cagatcagga ttctgttgtc cacactcaca
     3781 tgtacaaatc tgggcgtttg gatgcaggtt tttttctagc ctgtctatcc acagctttcc
     3841 cttaagccct ccgctctgta gcctaaaggg cccctctcca ggggaaggct aggcagtgac
     3901 cctgactttt accactacca tgcctcatcc caggaacttg ccctttactt ccagagactt
     3961 tcctctccct ccatttccac ccaggccacc ttccagagcc tagaacttta gaattggaat
     4021 catagaggtt atctagctgg ggttgtgtcc agcagagttt attaacacca gcctggcctt
     4081 gtttctgctc ttcctcaggc cttctttcgt cttgtcttcc acctccaaac ccatttgcac
     4141 acagactctt atacaggcac caaaaccaac tcttccgccc ctgaggccgt gcccctctgg
     4201 tgtgggccac ccctgcccca gtcactcacc gcttcctcat ctctggagtt cagccaggct
     4261 gccctggggg attctggagt gtcctttgcc acaaaagcaa gaaggtaggc gtgccccaac
     4321 ccctgagtgt gtgagcagag ggaggactgc ggggtgagag ggaaagaaaa tggacttcat
     4381 gactttcgtg gaagatccat ttcttttccc ccgattgcac aaactgcatg gacttgtggc
     4441 ctggctgtga ggagcaacat tggtttacgc ttctatcctt aaaaagttac agaactgtgt
     4501 cctatgacaa ttatttatag tgactataac tgaattgaca aatgtcaacg taactgataa
     4561 attatatttg gtaaaataaa gaggacgttt atttag
//
LOCUS       XM_032647012            3035 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 10 (UBXN10), mRNA.
ACCESSION   XM_032647012
VERSION     XM_032647012.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3035
                     /gene="UBXN10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     93% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116761254"
     CDS             104..943
                     /gene="UBXN10"
                     /codon_start=1
                     /product="UBX domain-containing protein 10"
                     /protein_id="XP_032502903.1"
                     /db_xref="GeneID:116761254"
                     /translation="MATEAPVNIAPPECTVVSTAADGFIWRPDSLNMRVMRPKSAKGR
                     PRPSLHKPAGTEGCCSLTPSSPPAIPCELPSSQKPGACAPKSPNQGAPDEIPELLQQV
                     PIGASSSLNKYPVLPSINRKTLEEGALETVAKKAGSLQLSGTQALYQAETRTVKMSEE
                     DSRAQPRSPERKFIVRTKRQSSYRARDLEEPSDPEPRLLLAVRSPSGRRFVHHFRPTD
                     DLYTVVAVAEHKNKATYRHRSIETMEVPRRHFSDLTKSLQECGILHKSVLGISQEDGE
                     GWP"
     misc_feature    689..916
                     /gene="UBXN10"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 10 (UBXN10) and similar proteins; Region:
                     UBX_UBXN10; cd17076"
                     /db_xref="CDD:340596"
     misc_feature    order(698..700,704..706,710..715,722..727,731..733,
                     830..835,839..841,893..904,908..910,914..916)
                     /gene="UBXN10"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340596"
ORIGIN      
        1 gcccaccggc gcggttgccc gggagaccca ggctgtttat ccgcgggaca gtgccaggcg
       61 acggcggcgg atggagcggc gccgctaggg gtcttgagga gcaatggcca cagaagcccc
      121 tgtgaacatc gccccccctg aatgcactgt tgtcagcaca gcagctgacg gcttcatctg
      181 gcggccagac tcactaaaca tgcgcgtcat gaggcccaag tccgccaagg gacgtcctcg
      241 gccaagtctg cataagcccg caggcacgga gggatgctgc agcctcacgc catcttcacc
      301 tccagccatt ccctgcgagt tgccgagcag ccagaaaccg ggagcctgcg cacccaaatc
      361 tccgaatcag ggagcccccg atgagatccc ggagctgctg cagcaggtgc ccataggggc
      421 atcctcttcc ctcaataaat acccagtcct tccttccatc aacaggaaga ccctggagga
      481 gggggccctg gaaacagttg ctaaaaaggc tggttccctg cagctgagcg gcacccaggc
      541 tctttaccaa gcggagaccc gcaccgtgaa gatgagtgaa gaagattccc gagctcagcc
      601 tcgttccccg gagaggaaat tcatcgtgcg gaccaagaga caaagctcct acagggccag
      661 agacctggag gagccgtcgg atccagagcc taggctgctg cttgccgtca gatcaccatc
      721 cggacggagg tttgtccacc atttccggcc aactgatgac ttatacaccg ttgtcgccgt
      781 ggccgaacac aagaacaagg ccacctaccg acaccgcagc attgaaacga tggaggtgcc
      841 caggagacat ttctctgacc tcaccaagtc tctgcaggag tgcggaatcc tccacaagtc
      901 ggtgctgggc atctcacagg aagatgggga gggatggccc tgagtccgca gccacccagc
      961 tggggtcctg ggtctctgag caaggagcat gcttgggcgc cacagcctcc caggcagctt
     1021 ggttccaagt gccaggtgaa tctggcgcgg ctgtgactct tgggacactc accctcagag
     1081 catcttcttc gacgcagtga aatctacgca ggcaccaaat gcgttaagag gattctcttc
     1141 cagctgttaa attctctcca ccacgggagt gaactggcaa gtgaccaagg ctattcttgg
     1201 aacagctgtg accaggcctt ctcctcttct ccttgggtcc tttctgaagc acctgcttac
     1261 ctttacaatg aacttgcact cccttgaagc caatggtttg cctttctgta tttgatgcag
     1321 gattaaacac ttcccagaga ggattctggt ctggtaaata accagggttc aggaaatact
     1381 gcactggcat ttgtgtttct tgcaagcatc tttaagaagc gggcgcttga ccctattttg
     1441 ggatcagctc ctttgccaag ctcggtggct cgagtttctc ggggattacc gtttgtgtga
     1501 agtggtttca gaggaaaaaa ataggtcttc agctaataca aatcccccaa cacaccaaca
     1561 tttcggaaag agccccagag ctggaaagtg aatcccttcc ataagcaggg atttgccagg
     1621 agctacttta tttttaatag agactgacga ggtttacaat ttttggtagc tactctctgc
     1681 acaaaatttt ccccaaactg agaagagcca gggtaatctt acatcctttg cttttgtcag
     1741 tggtggcatc ttttgttttt aaatggcaca aacctacacg tctgcacaag cttgtaggaa
     1801 aggccccttt ggcttatctg ggtgtggata cattgtttta tcccccagtt tcagggtctc
     1861 ccctactcca aacacggacg cccccttgag atgacagggg tgcccccgtg ttctgatttc
     1921 gaatcacccg gaggaagagg gcgcctcggt ttggtgtcgc tttgctgtgc ctacgctgag
     1981 accatgtgcc caaataagtg tctggtcgat gagcgtgaca cccgtagctg tgtggcagac
     2041 cccggagtct tgcttttcca gctctgaaat ggtgacatgg aaattttcca aagttccctc
     2101 gtgttgtaag ctcagcaagg ctcccacatc tcacctggat cccctttatg gccaaatcac
     2161 cgttcggagt ggagaacacc tgtcctccca gagcccagcc atcacaaagc cctgagtact
     2221 gatacgcacc cctacttgct aggtacacag agaaggcagg acttctagaa gcatagcaac
     2281 gagtgcatct cgtgcatagg tgaggcctgt ggttggagta atttgtggtt actcccagca
     2341 aattgatact tggccctgga gatggacacc aacatccttt cctctgaaga aggctcgact
     2401 tgtcctaact gcatcccacg ccacccagat cgttccagaa taggttattt tggaatgttt
     2461 tgcaaaattt cttaatgcca tttggtcagc cgctcctctg actgcaaagg tcagctgggg
     2521 ctggtggcgc cttgggcagg cccaggccac tggccgcatc ccccggctgc tgaccacgca
     2581 ggagggcctg gtgactcgag cccggtacgc acagtccagg gatttcgcct cctacccagg
     2641 actcgagcac ggaactctgc ctctgatcta ggaggctggg ggaagagact cccacatttt
     2701 attcttacca cctactctgt ggtaagaata aaatcccacc cacctgggac ttggtaattt
     2761 ctccaggcag gaaatcttta gaaaattgca gtgaaatgga gcatgcttgg aggagttaga
     2821 atgttctgcg cttaggggtt tgctactgct gtttagctta gaattttggg ggtagtggga
     2881 acaaaatgga aggcataaag cataggaata ttttaggata tttggggata tgtgaacaaa
     2941 gctagatttg aaacacatct tttgtttcaa ataaactttc tgcggggaca aaagatgaca
     3001 atactaataa taaaaactga tttgcgtgaa accga
//
LOCUS       XM_032647024            6245 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus F-box protein 42 (FBXO42), mRNA.
ACCESSION   XM_032647024
VERSION     XM_032647024.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6245
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6245
                     /gene="FBXO42"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 12
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761259"
     CDS             289..2442
                     /gene="FBXO42"
                     /codon_start=1
                     /product="F-box only protein 42"
                     /protein_id="XP_032502915.1"
                     /db_xref="GeneID:116761259"
                     /translation="MASSSDSEDDSFMAVDQEETVLEGTMEQDEEPRPILEVEETRHN
                     RSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFIKAVQEGNI
                     QWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKE
                     WIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKN
                     WWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNIS
                     GPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEDH
                     GAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPEPREYRSQ
                     SPVRSMDEAPCVNGRWGTLRPRAQRQTPSSSREGSLSPARGDGSPILNGGNLSPGSAA
                     VGGSSLDSPVQAISPSTPSTTEGYDLKMGLSLAPRRGSLPDQKDLRLGSMDLNWDPKP
                     ASSSSHMDVVDNRTVGGSLRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAM
                     SSKGPPASAALSPPLGSSPGSPGSQNLSSGETVPVSRPGPAQGDGHSLPPIARRLGHH
                     PPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTVA
                     QGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR"
     misc_feature    427..540
                     /gene="FBXO42"
                     /note="F-box domain found in F-box only protein 42
                     (FBXO42) and similar proteins; Region: F-box_FBXO42;
                     cd22110"
                     /db_xref="CDD:438882"
     misc_feature    order(436..438,448..450,457..462,469..474,487..489,
                     493..498,508..516,520..522)
                     /gene="FBXO42"
                     /note="putative Skp1 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:438882"
     misc_feature    616..>1227
                     /gene="FBXO42"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; Region: NanM; COG3055"
                     /db_xref="CDD:442289"
     misc_feature    643..792
                     /gene="FBXO42"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    808..975
                     /gene="FBXO42"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    982..1101
                     /gene="FBXO42"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1348..>2136
                     /gene="FBXO42"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
ORIGIN      
        1 ggtccccggc gcatgcgcgc tccgtgcggt cttctcccgg ccagagcagc aggagcggcg
       61 gcggcggcgg tgacggcggc ggaggcggct gcggcgttag agtagaggaa gatggcggct
      121 cggagcggct gggggtcccg ccagctgtga ggaatcccga gtgcggcaag cgcggcctgg
      181 ggcggagcgc ctctgctcag atcctatccc cggctccctc accttcttcg ccagcggagc
      241 gtacccgaga gcgtggcgct ggctgggcca gctgtcaagt ggaatgtcat ggccagctcc
      301 tcggacagtg aagatgatag cttcatggct gtggaccaag aagagactgt gctggaaggg
      361 acaatggagc aagatgagga gccccgccca atattggagg ttgaggagac tagacataat
      421 aggtccatgt ctgagctgcc ggaagaggtt ttggagtata tcctgtcctt tctctcacca
      481 taccaggaac acaaaactgc agcccttgtc tgcaaacagt ggtaccgact tattaaaggt
      541 gtagcccacc agtgttatca tggtttcata aaggctgtcc aggaaggaaa cattcagtgg
      601 gagagtcgga cttaccctta tcctggaacc ccaatcactc agcggttctc acacagtgcg
      661 tgctattatg atgctaatca gtctatgtat gtgtttggag gctgtaccca aagcagctgc
      721 aatgctgcct tcaatgacct ctggagactt gacctaaata gcaaagagtg gatccgacct
      781 ttggcttcag ggtcctatcc ttcccccaaa gctggcgcga ctctggttgt atacaaggac
      841 ctgctggtgc tgtttggtgg ttggacacgg ccaagccctt accccctaca ccaaccagag
      901 aggttctttg atgaaataca tacttactca ccctctaaaa actggtggaa ctgcattgtg
      961 acaacccatg gcccacctcc catggctggg cattcttctt gtgtgataga cgataaaatg
     1021 attgtctttg gtggctccct aggatcccgg caaatgagca acgacgtctg ggtccttgac
     1081 ctcgagcagt gggcgtggtc caagccgaac atctctggcc ctagtcctca tcctcgaggt
     1141 ggccaatctc agattgtcat agatgatgca actattttaa tccttggagg gtgtggcggt
     1201 cccaacgctc tgttcaagga tgcttggttg ttgcacatgc actcaggtcc ctgggcctgg
     1261 caaccactca aggtggaaaa tgaagaccat ggggccccag aactgtggtg ccatccagct
     1321 tgccgagtag ggcagtgcgt ggtggtcttc agccaggctc ctagtgggcg agccccactc
     1381 agccccagtt tgaactctcg cccatcacct atcagtgcca ctcctccagc cctagttccc
     1441 gaacctcgag aataccgctc tcagtctccg gtaaggagta tggatgaagc tccctgtgtt
     1501 aacggccgct ggggaacact gaggcccaga gcgcaaagac agaccccctc aagttcccga
     1561 gaaggaagcc tttccccagc cagaggcgat ggctctccca tcctcaatgg tgggaattta
     1621 tctccaggat cagcagctgt aggtggctct tccttggaca gtcctgtaca ggctatatct
     1681 cctagcactc catctaccac tgaaggatat gacctaaaaa tgggactttc tttggccccc
     1741 cgacgagggt cactaccaga tcagaaagat ctaagattgg gatcaatgga tctgaactgg
     1801 gatccgaaac ctgcttccag tagcagtcac atggatgttg tggacaacag aacagttggg
     1861 ggaagtttga gacaccctcc tgaacagaca aatggtgtgc ataccccacc gcacgtggcc
     1921 agcgcccttg caggagcagt ttccccaggt gccctgcgtc ggagcctaga agccatcaaa
     1981 gcaatgtcgt ccaaaggccc cccagcctcc gcagcactaa gtcctcctct gggatcttct
     2041 ccaggctccc ctgggagcca gaacctgagc agtggagaaa cagtgcccgt ttcccgccca
     2101 gggcctgccc aaggagatgg acattcctta cctcccattg cccggcgcct gggccaccac
     2161 cctccacagt ccctaaatgt tggcaaaccc ttgtaccaga gtatgaactg caagcccatg
     2221 cagatgtacg tgctggacat taaagacacc aaggagaagg ggcgagtcaa atggaaagta
     2281 tttaatagca gttctgtggt tggacctccc gaaaccagcc tgcatacggt ggcacaaggc
     2341 aggggtgaac tcatcatatt tggaggactc atggacaaga agcagaatgt gaagtactat
     2401 ccaaaaacaa acgccttgta ctttgtgcgg gcaaagagat aatatgttct gaaacccttt
     2461 cccttcctgt ggcttttaat ttggaatttt ccagcgtgca agcatttgga ctgagaattg
     2521 agaaaacaag ggacaaaatt actctcaaaa ccaaacccca attcccaacc tcactcactc
     2581 caggctggga tcaaatctcc attaagaaaa gaattatata aatatatatt atatagccaa
     2641 ctctgtttac aaagagggag agagctccgt cctggttcgg ataaaattgt tgctgtgttt
     2701 tagcagaggc tgtgctgcct gtttctacct tgctgacaac tagaccaaga atttagggaa
     2761 tagatgaata ccagaacctt cctgaagaaa ctgcagagcc acctgtaaat cttatttggc
     2821 cttcttagag ttagaaaaag aaagggcatg tgtaagatgc acgactagag gtttcagatt
     2881 cccatgcttc aggggctggc agggtaaaat aacctgtaga aaactgttct gctccccgcc
     2941 ccgccctgcc cgcagaggac ctgtgaaaac ttctctttgc agtaatgccc tatgcctggc
     3001 cctattctgc tctttgtgac tgaggaaagt tacccaacaa gggattttgt tccacgtttg
     3061 tgtgccggga tcatcgtgaa acaaagttta tgcagaaaca cctagtgtcc cttggttttt
     3121 gctctctcca tgtttcagaa aacattctgg tgtcttgatt gtggaatttt ctgacagtca
     3181 tatttcgttg cagttgccaa acaccacatt tgttctcttt ttctttccct taaaacctga
     3241 tcctcagagg ctgcctttgc tatttatagg ctgcttttct tccctcctcc ctccctccct
     3301 ccctccttcc ctccctcttt ttctttaata tgtggatttt ttaagcccta aaacctttcg
     3361 cactttcttt tattaagctt gggtgcccag agaaatctct tagaagtatt tctggaatcc
     3421 tttttctggt gtcactaggg gaccagtagg gaattctgag atgccagtac catgagaaat
     3481 ccttgaagca tcaaaagata ctgttttacc ttacgggctt ctttttattt cccaagcacg
     3541 ctggacacgc ccatccatgt ttatggaacg tggaaatgga tcttgggaga gaatcccaat
     3601 aacagttcct tctagaaatg acttttgccc ttgtttgtga catgcatttt tctgcctggc
     3661 tgttgactgg tgattgggtt gaatatcgtg tgcttggcct ctttgatgcg tggctgacct
     3721 tgggagcagc tccttctttg tcgttgtcat gtttacctgt cacccaaaca aggcttgggt
     3781 ttttactttc atgtcatttc tgagataagg tataaccaac cagagcattt tctttggttg
     3841 acacaggaaa ttacaagtca ccagtctcta aaccatggcc tggacatagg agacattggc
     3901 accacttaaa tgtggatttt tttggtgatt tctcatcagt agaaagagga tttttatttt
     3961 gcctttaggg tttaaatttc aaaacacggc atttctcatc cccacactcc cctttttctt
     4021 gttagcattt cccaagcgca agcctgctac agctggccct gggtcctggc tctcagccag
     4081 ctcttagcag tctgtctgat aagtctgttt tctcctgtta atgtcatgtt aaatcctttc
     4141 ccctagccat tagctttaca atgtggtctt ggtgggaaag cgcccctggt gccaagccca
     4201 ggaaagggcc agctcatggg gaggggtatg tgttccagaa actgctctat gtgctccctt
     4261 agatgaggaa actaccatgt gcctacttac tgtggtgtcc aactgctcag agctcagcac
     4321 ttagctttcc agactctctg cactgggcct gttgccagtc cttctttggc aaagactgtt
     4381 tgatcgtgtg ggggtcctta ttcacaagag aaagctagcc tagaagatca gcaattttgg
     4441 cattactgct attgctgaac gttgtttatg acattgcatt tgtgcatgga cagtgcctcc
     4501 aaactcagtt cctacttaaa tataaagtat ttggaagcct gcaagttcag agtctcaact
     4561 ttgtaatctt tccttttgtc ctgtggcctt cctaagccag ctgttaactt gttggttcct
     4621 tctactttcc gcaagtaggc aggcaacaga gatgatgatt ctcttagaaa gtaacctggc
     4681 tcctcggaac tccatggcat cccagtatta acccacgcca cttggaacca gactgtctgt
     4741 ttgcagctct tgaagaagaa tctgcctctt ccgcacctgg tggtgtgggt cctggtggct
     4801 cctgggcgtt gtggtcgtgt atcttggggg agtgatgcaa catagtcaag gtgactgtct
     4861 cctccagccc ttgtgaagcc gccccatgca gtggaacttc aggcgtctca gctgaggtga
     4921 ccatttccac ggcgccatgg atgcttcagt cagatcagat ttaaccacaa ctctggtttt
     4981 gacatgatgc tgactttgtc ttaaaagtca cggaggaaaa tgaggaaaaa tattttttta
     5041 aaccctcagg agcacctaaa gtaaatattt atccatattt aagtatttaa aatacatctt
     5101 gtttctactt gaagctttaa cccccttcca ttcctgcaag tgtgcctttg agagcccccg
     5161 tgtcacattg actccactgg ccacctcatt gacgtcgtga gaattttggt ctcttcccgt
     5221 cctcttgaac agagcttcct gttttctcct tttgcaggct gtgcagcaga gagttctgta
     5281 tttttgctca tgtttctgcc ctgctgctcc acttcggtgg tgggttccac aaaccaccac
     5341 ccacccaccc accgcaccca ccatacattt ggaagcacat atttggtatc aaaacaagct
     5401 taaattttag ttgtaaggca atactgggct tactctcctc ccagccctct agagattgat
     5461 ttcattttaa tgtttgagtt ttctatcaag aactgaaacc acgaactatc ctaggaacta
     5521 cgtccaaact ctttaaaata gaagaagagg aagaagaaag gaaagcaact gaagtcttga
     5581 ctttggagga cagaaaggca ccagctgatg gagaacaaag ggatgcttcc ttttcctttc
     5641 actttatttt tctggatttc cttctgcttt gcttcttcag agtgacattc ctggttggtt
     5701 tgtctgtctg tccttatcct tttagtgatc ctggtatggt gatgtgctct gctttgcatt
     5761 atctgtggtc tcttaccagc gcacaagtca gtggggagga tctgaacaca cccaggggca
     5821 aggaagccga acttcaaagc ctgtacccca tgcagcctcc ccatgaactg cagaaggcat
     5881 gttctgcatg gtcaccagta agtggctccc tccaccatgt tcactgtcaa atgaaagcaa
     5941 cccttaggca ttggctccac tgtactgtct gtctcctcgc tctgctccct tcccaccaac
     6001 cagggttcat gtcagtgcac acctgttgtg ccctgacgaa gctggtgctg tgagtgatgt
     6061 ttcccataca gctcaggggt cctgggtggc ttaccctgag acgatcattt taggcacata
     6121 acagtgtagg aatgaaaagt ggatttgatt tcattgatat ttaaatcttt gtcgatttta
     6181 ttttttgttt atgttttccc caatgacttt ttagcagttt aacaaataaa acaaaatgga
     6241 tagaa
//
LOCUS       XM_032647035            4455 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hes family bHLH transcription factor 4
            (HES4), transcript variant X1, mRNA.
ACCESSION   XM_032647035
VERSION     XM_032647035.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4455
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4455
                     /gene="HES4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761268"
     CDS             156..1097
                     /gene="HES4"
                     /codon_start=1
                     /product="transcription factor HES-4 isoform X1"
                     /protein_id="XP_032502926.1"
                     /db_xref="GeneID:116761268"
                     /translation="MPANTPGKLRASPRAGAPAGARRTPDQPRSAAEHRKVGTQPDAV
                     VRSGGERGADARGTQPLPAPQSSKPVMEKRRRARINESLAQLQSLLLDALRKEVSRGR
                     EGEIGEPGIPALLGCQPPTPAPPPELPPLEAGEGGHPGADREAPAEPAARAGDSRPPR
                     RPGSPGQVPRRLSRVSGRGESLPGWLRGRPGRRAVPPARPSGDLPGPAGALAPPASTG
                     PCRRSSGARGLRGPLAAASLRRPLPLAALRGGLGAALPAGPDGGAPRRPRGRGSGPAC
                     TLEAVAAVRSRPQNPLRLCQKIFISRDRVGSFVLSSP"
     misc_feature    348..>455
                     /gene="HES4"
                     /note="basic Helix Loop Helix (bHLH) domain superfamily;
                     Region: bHLH_SF; cl00081"
                     /db_xref="CDD:469605"
ORIGIN      
        1 ggagccggat tcacacgccc cgcggcggcg cttccttaaa tagccaggcg gctggctgcg
       61 cgcgctcggt cccggagcct ggaacccgcg ggagaggggc tcgggaagcc gtgcgtccgg
      121 cccgccctcg gccccgcgct gcgcgggggc gcaccatgcc tgccaacacc ccggggaagt
      181 tgagggcctc gccgcgggcg ggagcgccgg ccggtgcccg ccggaccccg gaccagcccc
      241 ggagcgcggc cgagcaccgg aaggtgggga cccagccaga cgcggttgta aggagcgggg
      301 gggagagggg agctgacgcc cgggggactc agccgctgcc ggccccgcag tcctccaagc
      361 ccgtcatgga gaagcggcgc cgagcgcgca tcaacgagag cctcgctcag ctccagagcc
      421 tcctcctgga cgccctcagg aaagaggtga gtcgggggcg ggagggcgag atcggggagc
      481 ctggaatccc ggcgctcctg ggctgccagc cgcccacacc ggccccgccc ccagagctcc
      541 cgccgctcga agctggagaa ggcggacatc ctggagctga ccgtgaagca cctgcagagc
      601 ctgcggcgcg tgcaggtgac agccgccctc cgcgccgacc cggcagtcct gggcaagtac
      661 cgcgccggct ttcacgagtg tctggccgag gtgaatcgct tcctggctgg ctgcgagggc
      721 gtcccggccg acgtgcggtc ccgcctgctc ggccatctgg cgacctgcct ggcccggctg
      781 gggcccttgc gccgcccgct tccaccggcc cctgccgccg aagttctggc gcccgcggtt
      841 tacgtgggcc gctcgccgcc gccagccttc gacggcccct gccccttgcc gcgctgcggg
      901 gcggtcttgg cgccgccctt cctgcggggc cggacggggg agcccctcgc cgcccccggg
      961 gccgcggctc agggccggcg tgcaccctgg aggccgtggc tgcggtgagg tcgcggcccc
     1021 agaacccgct gagactgtgc caaaaaatat ttatttccag agaccgcgtc gggagctttg
     1081 ttttgtcgtc tccgtgaagg gtccagtccg gcagaggccc ggcagcgggg tcggctgatg
     1141 tcttcgcgcg agcgggcagg gcgggccgcg ggggttctgc tcccacctgg gcccgcaggt
     1201 gcccggcgcg gaggttcggc cggccttgcg tttgcctgta tctaactgcg ctggagccgc
     1261 gacccgcctt ggagtcgggg cgggggggag ggtgtgtgag aggtcccgcg ggaggcttag
     1321 gcaggacggg gccagtcatc actttttcca gaatgtctcc ccgtgctggg aagcggtccc
     1381 gcagcatcac tgggcatgtt gtttcccact ctcactcgcg aggaccctgg aaggtggaga
     1441 catgtatttt cacactgttg tcttggtgct gagctgtggt gagggctgac tgtccctgaa
     1501 gcttcggttc tggcctgttc cacgtcctgc cttcttgtgg ccgagcacaa agctgcctgt
     1561 gcccacccgt gcgttgagcc tgccccaggc cagtgtctgc ccaggagagg gctgccagca
     1621 ggagagggca tctgagtccc aggggcaggg aacgggggcc agcccgacaa agggtactta
     1681 gtgctggggc tcttctcctg ccagagtcta gccctgctgt gtgccccatc ctgccctgag
     1741 aggggaggtc ccccttcagt acaaaggaac tggcattggt ccggcctaca cgtccgtcct
     1801 gagcaccagc tgtgtgttca ccctacaata cagcgatcct aggcagcgtt gggcatggcc
     1861 ccccaccccc caccccggga gtcgctgtcc tgtggtccca ggcctcccca ggctgctgct
     1921 gggggctgtg ctccaggtgc ggtgagggcg tggtccaagg cacgcagctg ggactgcagt
     1981 gtctcatcct gagccctgct gaggctgagg caagatctgt ttcccaacca cagccaagtt
     2041 tacctgatgg ttgccggcca cctgcctggc cagggaccat cgcggaggag gagggtgaat
     2101 cactgccggg gctggcccgc ccctcctcca gtggccccat cagctcccgt gcctgtgtca
     2161 tgcgcagggt tcacctgccc tcctggactc agctgtgcac acccggcagg gcctgccacg
     2221 tcccaccaag gcagttcctc cccggcctct agctgcctgg cccatcttcc tgagtgtcca
     2281 gggcccaggc cagtggtcct ggacagttgc agccatgcag gccgggtgcc gcaccctctg
     2341 cacacaggcc ctggggaggc tgggagagcc ggggctccag caggactgtg ggggagttgc
     2401 tcctgaccag cctggggggc cctcccagca ggagaattgt agagggtcca tttcagaagc
     2461 cagaagttca gcttggctgg gggaggggaa ccgctcaggg agggcctcag tgcaggaggg
     2521 gttggggggg gtgctttggg atatgaagct gggtgggtgg gtcggtgggt agggggagca
     2581 ccccgcctgg tggccagaga gaagggctgc ctgggaaggt cacctggaac ttgggtcatc
     2641 acactctccc ttctccaggg agggggtggc gacagctcca gaccagaccc cccacctccg
     2701 tcccagggcc ttgccccctc ccttacttcc tgtccctggc catctgttct caagacgcta
     2761 ttgccaaagg gatctttgcg ccgagcaccc tgttagccct ccagggacct ctcaggctca
     2821 gagggaacca cactgttcct cagacaggca agctcctctc gtctctatcc ctttgtactc
     2881 accccccccc cccgccccat tctctcccca ctttcccacc tgaggcagcc accccaggct
     2941 ccgagggctc tggaggccag ggccgtgtct ctgtcactca ctcctgtccc cagcacctgc
     3001 ctggaacagg aagacgctca ggtcgggctc aggccataca gacctcgtta attagcttgg
     3061 atgaaggagg agccaggagg tttgccgagg gtgtcgccct tggttagatt aggggggtgt
     3121 gagggagcac accggggcct gaggctgggc ccctccccag gccacccgtc cgcagtatcc
     3181 ttgtctgtgg gaggaggcca cacccctctc cccactcagc ctggacacct gcaccatccg
     3241 tggagagctg ggttgggggg ggggtctccc cctcacacca ggggctcttc ctactgccac
     3301 cctcccccct tctctgcccg tttcctgccc cctcccatgc ctcagagggg ctctgggtaa
     3361 ttcctctgtc cccctccacc cctttggctt ggcctttgtc ttgcaggcct ttcctgcaga
     3421 ataatagagg aagcatcttc tcggtggctg tgttgggggt gtgggaggaa tcagaacttc
     3481 ctcctccttg gggtgggtgt ggccagaagc cctgctgatc atttctcctc cactggcagg
     3541 tggagcctca ttcatctgtg gcctccttcc agcccagttg gaccctggca gggaccaagg
     3601 gtcaataaat gtttgctgaa ttcacgtgca aggtcaggtg atctgcctgc ctctgtgggt
     3661 gtctcagccc tgtggagccc tgtgacgctg ggcccctctg tctcgcctgt ggggtcaggg
     3721 cttggggacc agacaatgac agcaagtcat aggtgtttga aatatggaga aagaattaat
     3781 cctcatggtg acagaagtcc tcctggccag gcccatgaaa ctccagtcac ttgggaattt
     3841 ggggtggggc agggcctggg gctgcttgga gccctggctt gtgagaggtg aggccttagc
     3901 acccccacca gaactcctac ggttgccagc agcctcttcc tctccgctgg cacgcactgg
     3961 catgccctgg ctccagggcc tgctcccttt tcccgaggaa gaagctgaga ccagagggtc
     4021 ctgcggctgt gcctggctcc tctctcctcc atggagccct ggggggcata ctcatcctag
     4081 gatgcaccct tgggcgagga aggaggcccc caagagcccc cacctggtat tcagccttgt
     4141 aaatgtactg aggttgacct gcgtgaccag taagatcctg tagaagacga ggttgcaggg
     4201 catcctggcc tacgtctttg tctcatattc tccactctga ggcaggccag ctgttctttg
     4261 ctatggagag gccaacagtg tggtgtttag aagcagatcc tccggccctg tcgagccttc
     4321 agatgagacc ccagtcactg ccggcatctc aagggcaacg ctgagagact gagagccaga
     4381 atcacccagc tgagcagctc cttgactcct atccctcaga aactgtgcaa cataataaac
     4441 gtctgttgat ttaaa
//
LOCUS       XM_032647043            4455 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hes family bHLH transcription factor 4
            (HES4), transcript variant X2, mRNA.
ACCESSION   XM_032647043
VERSION     XM_032647043.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4455
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4455
                     /gene="HES4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761268"
     CDS             156..1097
                     /gene="HES4"
                     /codon_start=1
                     /product="transcription factor HES-4 isoform X2"
                     /protein_id="XP_032502934.1"
                     /db_xref="GeneID:116761268"
                     /translation="MPANTPGKLRASPRAGAPAGARRTPDQPRSAAEHRKVGTQPDAV
                     VRSGGERGADARGTQPLPAPQSSKPVMEKRRRARINESLAQLQSLLLDALRKESSRRS
                     KLEKADILELTVKHLQSLRRVQVTGERGRRRRGLWGRSRRHRGPRPPVPCRLRSRPPR
                     RPGSPGQVPRRLSRVSGRGESLPGWLRGRPGRRAVPPARPSGDLPGPAGALAPPASTG
                     PCRRSSGARGLRGPLAAASLRRPLPLAALRGGLGAALPAGPDGGAPRRPRGRGSGPAC
                     TLEAVAAVRSRPQNPLRLCQKIFISRDRVGSFVLSSP"
     misc_feature    348..527
                     /gene="HES4"
                     /note="basic Helix Loop Helix (bHLH) domain superfamily;
                     Region: bHLH_SF; cl00081"
                     /db_xref="CDD:469605"
     misc_feature    order(369..374,378..380,393..395,468..473)
                     /gene="HES4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381465"
     misc_feature    order(387..392,399..404,408..413,423..425,471..476,
                     483..488,495..497,501..506,513..518)
                     /gene="HES4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381465"
ORIGIN      
        1 ggagccggat tcacacgccc cgcggcggcg cttccttaaa tagccaggcg gctggctgcg
       61 cgcgctcggt cccggagcct ggaacccgcg ggagaggggc tcgggaagcc gtgcgtccgg
      121 cccgccctcg gccccgcgct gcgcgggggc gcaccatgcc tgccaacacc ccggggaagt
      181 tgagggcctc gccgcgggcg ggagcgccgg ccggtgcccg ccggaccccg gaccagcccc
      241 ggagcgcggc cgagcaccgg aaggtgggga cccagccaga cgcggttgta aggagcgggg
      301 gggagagggg agctgacgcc cgggggactc agccgctgcc ggccccgcag tcctccaagc
      361 ccgtcatgga gaagcggcgc cgagcgcgca tcaacgagag cctcgctcag ctccagagcc
      421 tcctcctgga cgccctcagg aaagagagct cccgccgctc gaagctggag aaggcggaca
      481 tcctggagct gaccgtgaag cacctgcaga gcctgcggcg cgtgcaggtg acaggtgagc
      541 gcgggcggcg gcggcgaggg ctctggggcc ggagccgccg ccaccgcggg ccccgaccgc
      601 ctgtcccctg ccgcctccgc agccgccctc cgcgccgacc cggcagtcct gggcaagtac
      661 cgcgccggct ttcacgagtg tctggccgag gtgaatcgct tcctggctgg ctgcgagggc
      721 gtcccggccg acgtgcggtc ccgcctgctc ggccatctgg cgacctgcct ggcccggctg
      781 gggcccttgc gccgcccgct tccaccggcc cctgccgccg aagttctggc gcccgcggtt
      841 tacgtgggcc gctcgccgcc gccagccttc gacggcccct gccccttgcc gcgctgcggg
      901 gcggtcttgg cgccgccctt cctgcggggc cggacggggg agcccctcgc cgcccccggg
      961 gccgcggctc agggccggcg tgcaccctgg aggccgtggc tgcggtgagg tcgcggcccc
     1021 agaacccgct gagactgtgc caaaaaatat ttatttccag agaccgcgtc gggagctttg
     1081 ttttgtcgtc tccgtgaagg gtccagtccg gcagaggccc ggcagcgggg tcggctgatg
     1141 tcttcgcgcg agcgggcagg gcgggccgcg ggggttctgc tcccacctgg gcccgcaggt
     1201 gcccggcgcg gaggttcggc cggccttgcg tttgcctgta tctaactgcg ctggagccgc
     1261 gacccgcctt ggagtcgggg cgggggggag ggtgtgtgag aggtcccgcg ggaggcttag
     1321 gcaggacggg gccagtcatc actttttcca gaatgtctcc ccgtgctggg aagcggtccc
     1381 gcagcatcac tgggcatgtt gtttcccact ctcactcgcg aggaccctgg aaggtggaga
     1441 catgtatttt cacactgttg tcttggtgct gagctgtggt gagggctgac tgtccctgaa
     1501 gcttcggttc tggcctgttc cacgtcctgc cttcttgtgg ccgagcacaa agctgcctgt
     1561 gcccacccgt gcgttgagcc tgccccaggc cagtgtctgc ccaggagagg gctgccagca
     1621 ggagagggca tctgagtccc aggggcaggg aacgggggcc agcccgacaa agggtactta
     1681 gtgctggggc tcttctcctg ccagagtcta gccctgctgt gtgccccatc ctgccctgag
     1741 aggggaggtc ccccttcagt acaaaggaac tggcattggt ccggcctaca cgtccgtcct
     1801 gagcaccagc tgtgtgttca ccctacaata cagcgatcct aggcagcgtt gggcatggcc
     1861 ccccaccccc caccccggga gtcgctgtcc tgtggtccca ggcctcccca ggctgctgct
     1921 gggggctgtg ctccaggtgc ggtgagggcg tggtccaagg cacgcagctg ggactgcagt
     1981 gtctcatcct gagccctgct gaggctgagg caagatctgt ttcccaacca cagccaagtt
     2041 tacctgatgg ttgccggcca cctgcctggc cagggaccat cgcggaggag gagggtgaat
     2101 cactgccggg gctggcccgc ccctcctcca gtggccccat cagctcccgt gcctgtgtca
     2161 tgcgcagggt tcacctgccc tcctggactc agctgtgcac acccggcagg gcctgccacg
     2221 tcccaccaag gcagttcctc cccggcctct agctgcctgg cccatcttcc tgagtgtcca
     2281 gggcccaggc cagtggtcct ggacagttgc agccatgcag gccgggtgcc gcaccctctg
     2341 cacacaggcc ctggggaggc tgggagagcc ggggctccag caggactgtg ggggagttgc
     2401 tcctgaccag cctggggggc cctcccagca ggagaattgt agagggtcca tttcagaagc
     2461 cagaagttca gcttggctgg gggaggggaa ccgctcaggg agggcctcag tgcaggaggg
     2521 gttggggggg gtgctttggg atatgaagct gggtgggtgg gtcggtgggt agggggagca
     2581 ccccgcctgg tggccagaga gaagggctgc ctgggaaggt cacctggaac ttgggtcatc
     2641 acactctccc ttctccaggg agggggtggc gacagctcca gaccagaccc cccacctccg
     2701 tcccagggcc ttgccccctc ccttacttcc tgtccctggc catctgttct caagacgcta
     2761 ttgccaaagg gatctttgcg ccgagcaccc tgttagccct ccagggacct ctcaggctca
     2821 gagggaacca cactgttcct cagacaggca agctcctctc gtctctatcc ctttgtactc
     2881 accccccccc cccgccccat tctctcccca ctttcccacc tgaggcagcc accccaggct
     2941 ccgagggctc tggaggccag ggccgtgtct ctgtcactca ctcctgtccc cagcacctgc
     3001 ctggaacagg aagacgctca ggtcgggctc aggccataca gacctcgtta attagcttgg
     3061 atgaaggagg agccaggagg tttgccgagg gtgtcgccct tggttagatt aggggggtgt
     3121 gagggagcac accggggcct gaggctgggc ccctccccag gccacccgtc cgcagtatcc
     3181 ttgtctgtgg gaggaggcca cacccctctc cccactcagc ctggacacct gcaccatccg
     3241 tggagagctg ggttgggggg ggggtctccc cctcacacca ggggctcttc ctactgccac
     3301 cctcccccct tctctgcccg tttcctgccc cctcccatgc ctcagagggg ctctgggtaa
     3361 ttcctctgtc cccctccacc cctttggctt ggcctttgtc ttgcaggcct ttcctgcaga
     3421 ataatagagg aagcatcttc tcggtggctg tgttgggggt gtgggaggaa tcagaacttc
     3481 ctcctccttg gggtgggtgt ggccagaagc cctgctgatc atttctcctc cactggcagg
     3541 tggagcctca ttcatctgtg gcctccttcc agcccagttg gaccctggca gggaccaagg
     3601 gtcaataaat gtttgctgaa ttcacgtgca aggtcaggtg atctgcctgc ctctgtgggt
     3661 gtctcagccc tgtggagccc tgtgacgctg ggcccctctg tctcgcctgt ggggtcaggg
     3721 cttggggacc agacaatgac agcaagtcat aggtgtttga aatatggaga aagaattaat
     3781 cctcatggtg acagaagtcc tcctggccag gcccatgaaa ctccagtcac ttgggaattt
     3841 ggggtggggc agggcctggg gctgcttgga gccctggctt gtgagaggtg aggccttagc
     3901 acccccacca gaactcctac ggttgccagc agcctcttcc tctccgctgg cacgcactgg
     3961 catgccctgg ctccagggcc tgctcccttt tcccgaggaa gaagctgaga ccagagggtc
     4021 ctgcggctgt gcctggctcc tctctcctcc atggagccct ggggggcata ctcatcctag
     4081 gatgcaccct tgggcgagga aggaggcccc caagagcccc cacctggtat tcagccttgt
     4141 aaatgtactg aggttgacct gcgtgaccag taagatcctg tagaagacga ggttgcaggg
     4201 catcctggcc tacgtctttg tctcatattc tccactctga ggcaggccag ctgttctttg
     4261 ctatggagag gccaacagtg tggtgtttag aagcagatcc tccggccctg tcgagccttc
     4321 agatgagacc ccagtcactg ccggcatctc aagggcaacg ctgagagact gagagccaga
     4381 atcacccagc tgagcagctc cttgactcct atccctcaga aactgtgcaa cataataaac
     4441 gtctgttgat ttaaa
//
LOCUS       XM_032647052            4368 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hes family bHLH transcription factor 4
            (HES4), transcript variant X3, mRNA.
ACCESSION   XM_032647052
VERSION     XM_032647052.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4368
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4368
                     /gene="HES4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761268"
     CDS             156..1010
                     /gene="HES4"
                     /codon_start=1
                     /product="transcription factor HES-4 isoform X3"
                     /protein_id="XP_032502943.1"
                     /db_xref="GeneID:116761268"
                     /translation="MPANTPGKLRASPRAGAPAGARRTPDQPRSAAEHRKSSKPVMEK
                     RRRARINESLAQLQSLLLDALRKEVSRGREGEIGEPGIPALLGCQPPTPAPPPELPPL
                     EAGEGGHPGADREAPAEPAARAGDSRPPRRPGSPGQVPRRLSRVSGRGESLPGWLRGR
                     PGRRAVPPARPSGDLPGPAGALAPPASTGPCRRSSGARGLRGPLAAASLRRPLPLAAL
                     RGGLGAALPAGPDGGAPRRPRGRGSGPACTLEAVAAVRSRPQNPLRLCQKIFISRDRV
                     GSFVLSSP"
     misc_feature    252..>368
                     /gene="HES4"
                     /note="basic Helix Loop Helix (bHLH) domain superfamily;
                     Region: bHLH_SF; cl00081"
                     /db_xref="CDD:469605"
ORIGIN      
        1 ggagccggat tcacacgccc cgcggcggcg cttccttaaa tagccaggcg gctggctgcg
       61 cgcgctcggt cccggagcct ggaacccgcg ggagaggggc tcgggaagcc gtgcgtccgg
      121 cccgccctcg gccccgcgct gcgcgggggc gcaccatgcc tgccaacacc ccggggaagt
      181 tgagggcctc gccgcgggcg ggagcgccgg ccggtgcccg ccggaccccg gaccagcccc
      241 ggagcgcggc cgagcaccgg aagtcctcca agcccgtcat ggagaagcgg cgccgagcgc
      301 gcatcaacga gagcctcgct cagctccaga gcctcctcct ggacgccctc aggaaagagg
      361 tgagtcgggg gcgggagggc gagatcgggg agcctggaat cccggcgctc ctgggctgcc
      421 agccgcccac accggccccg cccccagagc tcccgccgct cgaagctgga gaaggcggac
      481 atcctggagc tgaccgtgaa gcacctgcag agcctgcggc gcgtgcaggt gacagccgcc
      541 ctccgcgccg acccggcagt cctgggcaag taccgcgccg gctttcacga gtgtctggcc
      601 gaggtgaatc gcttcctggc tggctgcgag ggcgtcccgg ccgacgtgcg gtcccgcctg
      661 ctcggccatc tggcgacctg cctggcccgg ctggggccct tgcgccgccc gcttccaccg
      721 gcccctgccg ccgaagttct ggcgcccgcg gtttacgtgg gccgctcgcc gccgccagcc
      781 ttcgacggcc cctgcccctt gccgcgctgc ggggcggtct tggcgccgcc cttcctgcgg
      841 ggccggacgg gggagcccct cgccgccccc ggggccgcgg ctcagggccg gcgtgcaccc
      901 tggaggccgt ggctgcggtg aggtcgcggc cccagaaccc gctgagactg tgccaaaaaa
      961 tatttatttc cagagaccgc gtcgggagct ttgttttgtc gtctccgtga agggtccagt
     1021 ccggcagagg cccggcagcg gggtcggctg atgtcttcgc gcgagcgggc agggcgggcc
     1081 gcgggggttc tgctcccacc tgggcccgca ggtgcccggc gcggaggttc ggccggcctt
     1141 gcgtttgcct gtatctaact gcgctggagc cgcgacccgc cttggagtcg gggcgggggg
     1201 gagggtgtgt gagaggtccc gcgggaggct taggcaggac ggggccagtc atcacttttt
     1261 ccagaatgtc tccccgtgct gggaagcggt cccgcagcat cactgggcat gttgtttccc
     1321 actctcactc gcgaggaccc tggaaggtgg agacatgtat tttcacactg ttgtcttggt
     1381 gctgagctgt ggtgagggct gactgtccct gaagcttcgg ttctggcctg ttccacgtcc
     1441 tgccttcttg tggccgagca caaagctgcc tgtgcccacc cgtgcgttga gcctgcccca
     1501 ggccagtgtc tgcccaggag agggctgcca gcaggagagg gcatctgagt cccaggggca
     1561 gggaacgggg gccagcccga caaagggtac ttagtgctgg ggctcttctc ctgccagagt
     1621 ctagccctgc tgtgtgcccc atcctgccct gagaggggag gtcccccttc agtacaaagg
     1681 aactggcatt ggtccggcct acacgtccgt cctgagcacc agctgtgtgt tcaccctaca
     1741 atacagcgat cctaggcagc gttgggcatg gccccccacc ccccaccccg ggagtcgctg
     1801 tcctgtggtc ccaggcctcc ccaggctgct gctgggggct gtgctccagg tgcggtgagg
     1861 gcgtggtcca aggcacgcag ctgggactgc agtgtctcat cctgagccct gctgaggctg
     1921 aggcaagatc tgtttcccaa ccacagccaa gtttacctga tggttgccgg ccacctgcct
     1981 ggccagggac catcgcggag gaggagggtg aatcactgcc ggggctggcc cgcccctcct
     2041 ccagtggccc catcagctcc cgtgcctgtg tcatgcgcag ggttcacctg ccctcctgga
     2101 ctcagctgtg cacacccggc agggcctgcc acgtcccacc aaggcagttc ctccccggcc
     2161 tctagctgcc tggcccatct tcctgagtgt ccagggccca ggccagtggt cctggacagt
     2221 tgcagccatg caggccgggt gccgcaccct ctgcacacag gccctgggga ggctgggaga
     2281 gccggggctc cagcaggact gtgggggagt tgctcctgac cagcctgggg ggccctccca
     2341 gcaggagaat tgtagagggt ccatttcaga agccagaagt tcagcttggc tgggggaggg
     2401 gaaccgctca gggagggcct cagtgcagga ggggttgggg ggggtgcttt gggatatgaa
     2461 gctgggtggg tgggtcggtg ggtaggggga gcaccccgcc tggtggccag agagaagggc
     2521 tgcctgggaa ggtcacctgg aacttgggtc atcacactct cccttctcca gggagggggt
     2581 ggcgacagct ccagaccaga ccccccacct ccgtcccagg gccttgcccc ctcccttact
     2641 tcctgtccct ggccatctgt tctcaagacg ctattgccaa agggatcttt gcgccgagca
     2701 ccctgttagc cctccaggga cctctcaggc tcagagggaa ccacactgtt cctcagacag
     2761 gcaagctcct ctcgtctcta tccctttgta ctcacccccc ccccccgccc cattctctcc
     2821 ccactttccc acctgaggca gccaccccag gctccgaggg ctctggaggc cagggccgtg
     2881 tctctgtcac tcactcctgt ccccagcacc tgcctggaac aggaagacgc tcaggtcggg
     2941 ctcaggccat acagacctcg ttaattagct tggatgaagg aggagccagg aggtttgccg
     3001 agggtgtcgc ccttggttag attagggggg tgtgagggag cacaccgggg cctgaggctg
     3061 ggcccctccc caggccaccc gtccgcagta tccttgtctg tgggaggagg ccacacccct
     3121 ctccccactc agcctggaca cctgcaccat ccgtggagag ctgggttggg gggggggtct
     3181 ccccctcaca ccaggggctc ttcctactgc caccctcccc ccttctctgc ccgtttcctg
     3241 ccccctccca tgcctcagag gggctctggg taattcctct gtccccctcc acccctttgg
     3301 cttggccttt gtcttgcagg cctttcctgc agaataatag aggaagcatc ttctcggtgg
     3361 ctgtgttggg ggtgtgggag gaatcagaac ttcctcctcc ttggggtggg tgtggccaga
     3421 agccctgctg atcatttctc ctccactggc aggtggagcc tcattcatct gtggcctcct
     3481 tccagcccag ttggaccctg gcagggacca agggtcaata aatgtttgct gaattcacgt
     3541 gcaaggtcag gtgatctgcc tgcctctgtg ggtgtctcag ccctgtggag ccctgtgacg
     3601 ctgggcccct ctgtctcgcc tgtggggtca gggcttgggg accagacaat gacagcaagt
     3661 cataggtgtt tgaaatatgg agaaagaatt aatcctcatg gtgacagaag tcctcctggc
     3721 caggcccatg aaactccagt cacttgggaa tttggggtgg ggcagggcct ggggctgctt
     3781 ggagccctgg cttgtgagag gtgaggcctt agcaccccca ccagaactcc tacggttgcc
     3841 agcagcctct tcctctccgc tggcacgcac tggcatgccc tggctccagg gcctgctccc
     3901 ttttcccgag gaagaagctg agaccagagg gtcctgcggc tgtgcctggc tcctctctcc
     3961 tccatggagc cctggggggc atactcatcc taggatgcac ccttgggcga ggaaggaggc
     4021 ccccaagagc ccccacctgg tattcagcct tgtaaatgta ctgaggttga cctgcgtgac
     4081 cagtaagatc ctgtagaaga cgaggttgca gggcatcctg gcctacgtct ttgtctcata
     4141 ttctccactc tgaggcaggc cagctgttct ttgctatgga gaggccaaca gtgtggtgtt
     4201 tagaagcaga tcctccggcc ctgtcgagcc ttcagatgag accccagtca ctgccggcat
     4261 ctcaagggca acgctgagag actgagagcc agaatcaccc agctgagcag ctccttgact
     4321 cctatccctc agaaactgtg caacataata aacgtctgtt gatttaaa
//
LOCUS       XM_032647060            4368 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hes family bHLH transcription factor 4
            (HES4), transcript variant X4, mRNA.
ACCESSION   XM_032647060
VERSION     XM_032647060.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4368
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4368
                     /gene="HES4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761268"
     CDS             156..1010
                     /gene="HES4"
                     /codon_start=1
                     /product="transcription factor HES-4 isoform X4"
                     /protein_id="XP_032502951.1"
                     /db_xref="GeneID:116761268"
                     /translation="MPANTPGKLRASPRAGAPAGARRTPDQPRSAAEHRKSSKPVMEK
                     RRRARINESLAQLQSLLLDALRKESSRRSKLEKADILELTVKHLQSLRRVQVTGERGR
                     RRRGLWGRSRRHRGPRPPVPCRLRSRPPRRPGSPGQVPRRLSRVSGRGESLPGWLRGR
                     PGRRAVPPARPSGDLPGPAGALAPPASTGPCRRSSGARGLRGPLAAASLRRPLPLAAL
                     RGGLGAALPAGPDGGAPRRPRGRGSGPACTLEAVAAVRSRPQNPLRLCQKIFISRDRV
                     GSFVLSSP"
     misc_feature    252..440
                     /gene="HES4"
                     /note="basic helix-loop-helix-orange (bHLH-O) domain found
                     in hairy and enhancer of split HES-1, HES-4 and similar
                     proteins; Region: bHLH-O_HES1_4; cd11459"
                     /db_xref="CDD:381465"
     misc_feature    order(261..263,291..296,300..308,312..317,321..326,
                     333..338,345..347,375..377,381..389,396..401,405..410,
                     414..422,426..431,438..440)
                     /gene="HES4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381465"
     misc_feature    order(270..278,285..287,291..296,306..308,381..386)
                     /gene="HES4"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381465"
ORIGIN      
        1 ggagccggat tcacacgccc cgcggcggcg cttccttaaa tagccaggcg gctggctgcg
       61 cgcgctcggt cccggagcct ggaacccgcg ggagaggggc tcgggaagcc gtgcgtccgg
      121 cccgccctcg gccccgcgct gcgcgggggc gcaccatgcc tgccaacacc ccggggaagt
      181 tgagggcctc gccgcgggcg ggagcgccgg ccggtgcccg ccggaccccg gaccagcccc
      241 ggagcgcggc cgagcaccgg aagtcctcca agcccgtcat ggagaagcgg cgccgagcgc
      301 gcatcaacga gagcctcgct cagctccaga gcctcctcct ggacgccctc aggaaagaga
      361 gctcccgccg ctcgaagctg gagaaggcgg acatcctgga gctgaccgtg aagcacctgc
      421 agagcctgcg gcgcgtgcag gtgacaggtg agcgcgggcg gcggcggcga gggctctggg
      481 gccggagccg ccgccaccgc gggccccgac cgcctgtccc ctgccgcctc cgcagccgcc
      541 ctccgcgccg acccggcagt cctgggcaag taccgcgccg gctttcacga gtgtctggcc
      601 gaggtgaatc gcttcctggc tggctgcgag ggcgtcccgg ccgacgtgcg gtcccgcctg
      661 ctcggccatc tggcgacctg cctggcccgg ctggggccct tgcgccgccc gcttccaccg
      721 gcccctgccg ccgaagttct ggcgcccgcg gtttacgtgg gccgctcgcc gccgccagcc
      781 ttcgacggcc cctgcccctt gccgcgctgc ggggcggtct tggcgccgcc cttcctgcgg
      841 ggccggacgg gggagcccct cgccgccccc ggggccgcgg ctcagggccg gcgtgcaccc
      901 tggaggccgt ggctgcggtg aggtcgcggc cccagaaccc gctgagactg tgccaaaaaa
      961 tatttatttc cagagaccgc gtcgggagct ttgttttgtc gtctccgtga agggtccagt
     1021 ccggcagagg cccggcagcg gggtcggctg atgtcttcgc gcgagcgggc agggcgggcc
     1081 gcgggggttc tgctcccacc tgggcccgca ggtgcccggc gcggaggttc ggccggcctt
     1141 gcgtttgcct gtatctaact gcgctggagc cgcgacccgc cttggagtcg gggcgggggg
     1201 gagggtgtgt gagaggtccc gcgggaggct taggcaggac ggggccagtc atcacttttt
     1261 ccagaatgtc tccccgtgct gggaagcggt cccgcagcat cactgggcat gttgtttccc
     1321 actctcactc gcgaggaccc tggaaggtgg agacatgtat tttcacactg ttgtcttggt
     1381 gctgagctgt ggtgagggct gactgtccct gaagcttcgg ttctggcctg ttccacgtcc
     1441 tgccttcttg tggccgagca caaagctgcc tgtgcccacc cgtgcgttga gcctgcccca
     1501 ggccagtgtc tgcccaggag agggctgcca gcaggagagg gcatctgagt cccaggggca
     1561 gggaacgggg gccagcccga caaagggtac ttagtgctgg ggctcttctc ctgccagagt
     1621 ctagccctgc tgtgtgcccc atcctgccct gagaggggag gtcccccttc agtacaaagg
     1681 aactggcatt ggtccggcct acacgtccgt cctgagcacc agctgtgtgt tcaccctaca
     1741 atacagcgat cctaggcagc gttgggcatg gccccccacc ccccaccccg ggagtcgctg
     1801 tcctgtggtc ccaggcctcc ccaggctgct gctgggggct gtgctccagg tgcggtgagg
     1861 gcgtggtcca aggcacgcag ctgggactgc agtgtctcat cctgagccct gctgaggctg
     1921 aggcaagatc tgtttcccaa ccacagccaa gtttacctga tggttgccgg ccacctgcct
     1981 ggccagggac catcgcggag gaggagggtg aatcactgcc ggggctggcc cgcccctcct
     2041 ccagtggccc catcagctcc cgtgcctgtg tcatgcgcag ggttcacctg ccctcctgga
     2101 ctcagctgtg cacacccggc agggcctgcc acgtcccacc aaggcagttc ctccccggcc
     2161 tctagctgcc tggcccatct tcctgagtgt ccagggccca ggccagtggt cctggacagt
     2221 tgcagccatg caggccgggt gccgcaccct ctgcacacag gccctgggga ggctgggaga
     2281 gccggggctc cagcaggact gtgggggagt tgctcctgac cagcctgggg ggccctccca
     2341 gcaggagaat tgtagagggt ccatttcaga agccagaagt tcagcttggc tgggggaggg
     2401 gaaccgctca gggagggcct cagtgcagga ggggttgggg ggggtgcttt gggatatgaa
     2461 gctgggtggg tgggtcggtg ggtaggggga gcaccccgcc tggtggccag agagaagggc
     2521 tgcctgggaa ggtcacctgg aacttgggtc atcacactct cccttctcca gggagggggt
     2581 ggcgacagct ccagaccaga ccccccacct ccgtcccagg gccttgcccc ctcccttact
     2641 tcctgtccct ggccatctgt tctcaagacg ctattgccaa agggatcttt gcgccgagca
     2701 ccctgttagc cctccaggga cctctcaggc tcagagggaa ccacactgtt cctcagacag
     2761 gcaagctcct ctcgtctcta tccctttgta ctcacccccc ccccccgccc cattctctcc
     2821 ccactttccc acctgaggca gccaccccag gctccgaggg ctctggaggc cagggccgtg
     2881 tctctgtcac tcactcctgt ccccagcacc tgcctggaac aggaagacgc tcaggtcggg
     2941 ctcaggccat acagacctcg ttaattagct tggatgaagg aggagccagg aggtttgccg
     3001 agggtgtcgc ccttggttag attagggggg tgtgagggag cacaccgggg cctgaggctg
     3061 ggcccctccc caggccaccc gtccgcagta tccttgtctg tgggaggagg ccacacccct
     3121 ctccccactc agcctggaca cctgcaccat ccgtggagag ctgggttggg gggggggtct
     3181 ccccctcaca ccaggggctc ttcctactgc caccctcccc ccttctctgc ccgtttcctg
     3241 ccccctccca tgcctcagag gggctctggg taattcctct gtccccctcc acccctttgg
     3301 cttggccttt gtcttgcagg cctttcctgc agaataatag aggaagcatc ttctcggtgg
     3361 ctgtgttggg ggtgtgggag gaatcagaac ttcctcctcc ttggggtggg tgtggccaga
     3421 agccctgctg atcatttctc ctccactggc aggtggagcc tcattcatct gtggcctcct
     3481 tccagcccag ttggaccctg gcagggacca agggtcaata aatgtttgct gaattcacgt
     3541 gcaaggtcag gtgatctgcc tgcctctgtg ggtgtctcag ccctgtggag ccctgtgacg
     3601 ctgggcccct ctgtctcgcc tgtggggtca gggcttgggg accagacaat gacagcaagt
     3661 cataggtgtt tgaaatatgg agaaagaatt aatcctcatg gtgacagaag tcctcctggc
     3721 caggcccatg aaactccagt cacttgggaa tttggggtgg ggcagggcct ggggctgctt
     3781 ggagccctgg cttgtgagag gtgaggcctt agcaccccca ccagaactcc tacggttgcc
     3841 agcagcctct tcctctccgc tggcacgcac tggcatgccc tggctccagg gcctgctccc
     3901 ttttcccgag gaagaagctg agaccagagg gtcctgcggc tgtgcctggc tcctctctcc
     3961 tccatggagc cctggggggc atactcatcc taggatgcac ccttgggcga ggaaggaggc
     4021 ccccaagagc ccccacctgg tattcagcct tgtaaatgta ctgaggttga cctgcgtgac
     4081 cagtaagatc ctgtagaaga cgaggttgca gggcatcctg gcctacgtct ttgtctcata
     4141 ttctccactc tgaggcaggc cagctgttct ttgctatgga gaggccaaca gtgtggtgtt
     4201 tagaagcaga tcctccggcc ctgtcgagcc ttcagatgag accccagtca ctgccggcat
     4261 ctcaagggca acgctgagag actgagagcc agaatcaccc agctgagcag ctccttgact
     4321 cctatccctc agaaactgtg caacataata aacgtctgtt gatttaaa
//
LOCUS       XM_032647067            4367 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hes family bHLH transcription factor 4
            (HES4), transcript variant X5, mRNA.
ACCESSION   XM_032647067
VERSION     XM_032647067.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4367
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4367
                     /gene="HES4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761268"
     CDS             156..920
                     /gene="HES4"
                     /codon_start=1
                     /product="transcription factor HES-4 isoform X5"
                     /protein_id="XP_032502958.1"
                     /db_xref="GeneID:116761268"
                     /translation="MPANTPGKLRASPRAGAPAGARRTPDQPRSAAEHRKVGTQPDAV
                     VRSGGERGADARGTQPLPAPQSSKPVMEKRRRARINESLAQLQSLLLDALRKESSRRS
                     KLEKADILELTVKHLQSLRRVQVTAALRADPAVLGKYRAGFHECLAEVNRFLAGCEGV
                     PADVRSRLLGHLATCLARLGPLRRPLPPAPAAEVLAPAVYVGRSPPPAFDGPCPLPRC
                     GAVLAPPFLRGRTGEPLAAPGAAAQGRRAPWRPWLR"
     misc_feature    348..527
                     /gene="HES4"
                     /note="basic Helix Loop Helix (bHLH) domain superfamily;
                     Region: bHLH_SF; cl00081"
                     /db_xref="CDD:469605"
     misc_feature    order(369..374,378..380,393..395,468..473)
                     /gene="HES4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381465"
     misc_feature    order(387..392,399..404,408..413,423..425,471..476,
                     483..488,495..497,501..506,513..518)
                     /gene="HES4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381465"
     misc_feature    567..686
                     /gene="HES4"
                     /note="Hairy Orange; Region: Hairy_orange; pfam07527"
                     /db_xref="CDD:462193"
ORIGIN      
        1 ggagccggat tcacacgccc cgcggcggcg cttccttaaa tagccaggcg gctggctgcg
       61 cgcgctcggt cccggagcct ggaacccgcg ggagaggggc tcgggaagcc gtgcgtccgg
      121 cccgccctcg gccccgcgct gcgcgggggc gcaccatgcc tgccaacacc ccggggaagt
      181 tgagggcctc gccgcgggcg ggagcgccgg ccggtgcccg ccggaccccg gaccagcccc
      241 ggagcgcggc cgagcaccgg aaggtgggga cccagccaga cgcggttgta aggagcgggg
      301 gggagagggg agctgacgcc cgggggactc agccgctgcc ggccccgcag tcctccaagc
      361 ccgtcatgga gaagcggcgc cgagcgcgca tcaacgagag cctcgctcag ctccagagcc
      421 tcctcctgga cgccctcagg aaagagagct cccgccgctc gaagctggag aaggcggaca
      481 tcctggagct gaccgtgaag cacctgcaga gcctgcggcg cgtgcaggtg acagccgccc
      541 tccgcgccga cccggcagtc ctgggcaagt accgcgccgg ctttcacgag tgtctggccg
      601 aggtgaatcg cttcctggct ggctgcgagg gcgtcccggc cgacgtgcgg tcccgcctgc
      661 tcggccatct ggcgacctgc ctggcccggc tggggccctt gcgccgcccg cttccaccgg
      721 cccctgccgc cgaagttctg gcgcccgcgg tttacgtggg ccgctcgccg ccgccagcct
      781 tcgacggccc ctgccccttg ccgcgctgcg gggcggtctt ggcgccgccc ttcctgcggg
      841 gccggacggg ggagcccctc gccgcccccg gggccgcggc tcagggccgg cgtgcaccct
      901 ggaggccgtg gctgcggtga ggtcgcggcc ccagaacccg ctgagactgt gccaaaaaat
      961 atttatttcc agagaccgcg tcgggagctt tgttttgtcg tctccgtgaa gggtccagtc
     1021 cggcagaggc ccggcagcgg ggtcggctga tgtcttcgcg cgagcgggca gggcgggccg
     1081 cgggggttct gctcccacct gggcccgcag gtgcccggcg cggaggttcg gccggccttg
     1141 cgtttgcctg tatctaactg cgctggagcc gcgacccgcc ttggagtcgg ggcggggggg
     1201 agggtgtgtg agaggtcccg cgggaggctt aggcaggacg gggccagtca tcactttttc
     1261 cagaatgtct ccccgtgctg ggaagcggtc ccgcagcatc actgggcatg ttgtttccca
     1321 ctctcactcg cgaggaccct ggaaggtgga gacatgtatt ttcacactgt tgtcttggtg
     1381 ctgagctgtg gtgagggctg actgtccctg aagcttcggt tctggcctgt tccacgtcct
     1441 gccttcttgt ggccgagcac aaagctgcct gtgcccaccc gtgcgttgag cctgccccag
     1501 gccagtgtct gcccaggaga gggctgccag caggagaggg catctgagtc ccaggggcag
     1561 ggaacggggg ccagcccgac aaagggtact tagtgctggg gctcttctcc tgccagagtc
     1621 tagccctgct gtgtgcccca tcctgccctg agaggggagg tcccccttca gtacaaagga
     1681 actggcattg gtccggccta cacgtccgtc ctgagcacca gctgtgtgtt caccctacaa
     1741 tacagcgatc ctaggcagcg ttgggcatgg ccccccaccc cccaccccgg gagtcgctgt
     1801 cctgtggtcc caggcctccc caggctgctg ctgggggctg tgctccaggt gcggtgaggg
     1861 cgtggtccaa ggcacgcagc tgggactgca gtgtctcatc ctgagccctg ctgaggctga
     1921 ggcaagatct gtttcccaac cacagccaag tttacctgat ggttgccggc cacctgcctg
     1981 gccagggacc atcgcggagg aggagggtga atcactgccg gggctggccc gcccctcctc
     2041 cagtggcccc atcagctccc gtgcctgtgt catgcgcagg gttcacctgc cctcctggac
     2101 tcagctgtgc acacccggca gggcctgcca cgtcccacca aggcagttcc tccccggcct
     2161 ctagctgcct ggcccatctt cctgagtgtc cagggcccag gccagtggtc ctggacagtt
     2221 gcagccatgc aggccgggtg ccgcaccctc tgcacacagg ccctggggag gctgggagag
     2281 ccggggctcc agcaggactg tgggggagtt gctcctgacc agcctggggg gccctcccag
     2341 caggagaatt gtagagggtc catttcagaa gccagaagtt cagcttggct gggggagggg
     2401 aaccgctcag ggagggcctc agtgcaggag gggttggggg gggtgctttg ggatatgaag
     2461 ctgggtgggt gggtcggtgg gtagggggag caccccgcct ggtggccaga gagaagggct
     2521 gcctgggaag gtcacctgga acttgggtca tcacactctc ccttctccag ggagggggtg
     2581 gcgacagctc cagaccagac cccccacctc cgtcccaggg ccttgccccc tcccttactt
     2641 cctgtccctg gccatctgtt ctcaagacgc tattgccaaa gggatctttg cgccgagcac
     2701 cctgttagcc ctccagggac ctctcaggct cagagggaac cacactgttc ctcagacagg
     2761 caagctcctc tcgtctctat ccctttgtac tcaccccccc cccccgcccc attctctccc
     2821 cactttccca cctgaggcag ccaccccagg ctccgagggc tctggaggcc agggccgtgt
     2881 ctctgtcact cactcctgtc cccagcacct gcctggaaca ggaagacgct caggtcgggc
     2941 tcaggccata cagacctcgt taattagctt ggatgaagga ggagccagga ggtttgccga
     3001 gggtgtcgcc cttggttaga ttaggggggt gtgagggagc acaccggggc ctgaggctgg
     3061 gcccctcccc aggccacccg tccgcagtat ccttgtctgt gggaggaggc cacacccctc
     3121 tccccactca gcctggacac ctgcaccatc cgtggagagc tgggttgggg ggggggtctc
     3181 cccctcacac caggggctct tcctactgcc accctccccc cttctctgcc cgtttcctgc
     3241 cccctcccat gcctcagagg ggctctgggt aattcctctg tccccctcca cccctttggc
     3301 ttggcctttg tcttgcaggc ctttcctgca gaataataga ggaagcatct tctcggtggc
     3361 tgtgttgggg gtgtgggagg aatcagaact tcctcctcct tggggtgggt gtggccagaa
     3421 gccctgctga tcatttctcc tccactggca ggtggagcct cattcatctg tggcctcctt
     3481 ccagcccagt tggaccctgg cagggaccaa gggtcaataa atgtttgctg aattcacgtg
     3541 caaggtcagg tgatctgcct gcctctgtgg gtgtctcagc cctgtggagc cctgtgacgc
     3601 tgggcccctc tgtctcgcct gtggggtcag ggcttgggga ccagacaatg acagcaagtc
     3661 ataggtgttt gaaatatgga gaaagaatta atcctcatgg tgacagaagt cctcctggcc
     3721 aggcccatga aactccagtc acttgggaat ttggggtggg gcagggcctg gggctgcttg
     3781 gagccctggc ttgtgagagg tgaggcctta gcacccccac cagaactcct acggttgcca
     3841 gcagcctctt cctctccgct ggcacgcact ggcatgccct ggctccaggg cctgctccct
     3901 tttcccgagg aagaagctga gaccagaggg tcctgcggct gtgcctggct cctctctcct
     3961 ccatggagcc ctggggggca tactcatcct aggatgcacc cttgggcgag gaaggaggcc
     4021 cccaagagcc cccacctggt attcagcctt gtaaatgtac tgaggttgac ctgcgtgacc
     4081 agtaagatcc tgtagaagac gaggttgcag ggcatcctgg cctacgtctt tgtctcatat
     4141 tctccactct gaggcaggcc agctgttctt tgctatggag aggccaacag tgtggtgttt
     4201 agaagcagat cctccggccc tgtcgagcct tcagatgaga ccccagtcac tgccggcatc
     4261 tcaagggcaa cgctgagaga ctgagagcca gaatcaccca gctgagcagc tccttgactc
     4321 ctatccctca gaaactgtgc aacataataa acgtctgttg atttaaa
//
LOCUS       XM_032647077            4280 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hes family bHLH transcription factor 4
            (HES4), transcript variant X6, mRNA.
ACCESSION   XM_032647077
VERSION     XM_032647077.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4280
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4280
                     /gene="HES4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761268"
     CDS             156..833
                     /gene="HES4"
                     /codon_start=1
                     /product="transcription factor HES-4 isoform X6"
                     /protein_id="XP_032502968.1"
                     /db_xref="GeneID:116761268"
                     /translation="MPANTPGKLRASPRAGAPAGARRTPDQPRSAAEHRKSSKPVMEK
                     RRRARINESLAQLQSLLLDALRKESSRRSKLEKADILELTVKHLQSLRRVQVTAALRA
                     DPAVLGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLLGHLATCLARLGPLRRPLPPA
                     PAAEVLAPAVYVGRSPPPAFDGPCPLPRCGAVLAPPFLRGRTGEPLAAPGAAAQGRRA
                     PWRPWLR"
     misc_feature    252..440
                     /gene="HES4"
                     /note="basic helix-loop-helix-orange (bHLH-O) domain found
                     in hairy and enhancer of split HES-1, HES-4 and similar
                     proteins; Region: bHLH-O_HES1_4; cd11459"
                     /db_xref="CDD:381465"
     misc_feature    order(261..263,291..296,300..308,312..317,321..326,
                     333..338,345..347,375..377,381..389,396..401,405..410,
                     414..422,426..431,438..440)
                     /gene="HES4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381465"
     misc_feature    order(270..278,285..287,291..296,306..308,381..386)
                     /gene="HES4"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381465"
     misc_feature    480..599
                     /gene="HES4"
                     /note="Hairy Orange; Region: Hairy_orange; pfam07527"
                     /db_xref="CDD:462193"
ORIGIN      
        1 ggagccggat tcacacgccc cgcggcggcg cttccttaaa tagccaggcg gctggctgcg
       61 cgcgctcggt cccggagcct ggaacccgcg ggagaggggc tcgggaagcc gtgcgtccgg
      121 cccgccctcg gccccgcgct gcgcgggggc gcaccatgcc tgccaacacc ccggggaagt
      181 tgagggcctc gccgcgggcg ggagcgccgg ccggtgcccg ccggaccccg gaccagcccc
      241 ggagcgcggc cgagcaccgg aagtcctcca agcccgtcat ggagaagcgg cgccgagcgc
      301 gcatcaacga gagcctcgct cagctccaga gcctcctcct ggacgccctc aggaaagaga
      361 gctcccgccg ctcgaagctg gagaaggcgg acatcctgga gctgaccgtg aagcacctgc
      421 agagcctgcg gcgcgtgcag gtgacagccg ccctccgcgc cgacccggca gtcctgggca
      481 agtaccgcgc cggctttcac gagtgtctgg ccgaggtgaa tcgcttcctg gctggctgcg
      541 agggcgtccc ggccgacgtg cggtcccgcc tgctcggcca tctggcgacc tgcctggccc
      601 ggctggggcc cttgcgccgc ccgcttccac cggcccctgc cgccgaagtt ctggcgcccg
      661 cggtttacgt gggccgctcg ccgccgccag ccttcgacgg cccctgcccc ttgccgcgct
      721 gcggggcggt cttggcgccg cccttcctgc ggggccggac gggggagccc ctcgccgccc
      781 ccggggccgc ggctcagggc cggcgtgcac cctggaggcc gtggctgcgg tgaggtcgcg
      841 gccccagaac ccgctgagac tgtgccaaaa aatatttatt tccagagacc gcgtcgggag
      901 ctttgttttg tcgtctccgt gaagggtcca gtccggcaga ggcccggcag cggggtcggc
      961 tgatgtcttc gcgcgagcgg gcagggcggg ccgcgggggt tctgctccca cctgggcccg
     1021 caggtgcccg gcgcggaggt tcggccggcc ttgcgtttgc ctgtatctaa ctgcgctgga
     1081 gccgcgaccc gccttggagt cggggcgggg gggagggtgt gtgagaggtc ccgcgggagg
     1141 cttaggcagg acggggccag tcatcacttt ttccagaatg tctccccgtg ctgggaagcg
     1201 gtcccgcagc atcactgggc atgttgtttc ccactctcac tcgcgaggac cctggaaggt
     1261 ggagacatgt attttcacac tgttgtcttg gtgctgagct gtggtgaggg ctgactgtcc
     1321 ctgaagcttc ggttctggcc tgttccacgt cctgccttct tgtggccgag cacaaagctg
     1381 cctgtgccca cccgtgcgtt gagcctgccc caggccagtg tctgcccagg agagggctgc
     1441 cagcaggaga gggcatctga gtcccagggg cagggaacgg gggccagccc gacaaagggt
     1501 acttagtgct ggggctcttc tcctgccaga gtctagccct gctgtgtgcc ccatcctgcc
     1561 ctgagagggg aggtccccct tcagtacaaa ggaactggca ttggtccggc ctacacgtcc
     1621 gtcctgagca ccagctgtgt gttcacccta caatacagcg atcctaggca gcgttgggca
     1681 tggcccccca ccccccaccc cgggagtcgc tgtcctgtgg tcccaggcct ccccaggctg
     1741 ctgctggggg ctgtgctcca ggtgcggtga gggcgtggtc caaggcacgc agctgggact
     1801 gcagtgtctc atcctgagcc ctgctgaggc tgaggcaaga tctgtttccc aaccacagcc
     1861 aagtttacct gatggttgcc ggccacctgc ctggccaggg accatcgcgg aggaggaggg
     1921 tgaatcactg ccggggctgg cccgcccctc ctccagtggc cccatcagct cccgtgcctg
     1981 tgtcatgcgc agggttcacc tgccctcctg gactcagctg tgcacacccg gcagggcctg
     2041 ccacgtccca ccaaggcagt tcctccccgg cctctagctg cctggcccat cttcctgagt
     2101 gtccagggcc caggccagtg gtcctggaca gttgcagcca tgcaggccgg gtgccgcacc
     2161 ctctgcacac aggccctggg gaggctggga gagccggggc tccagcagga ctgtggggga
     2221 gttgctcctg accagcctgg ggggccctcc cagcaggaga attgtagagg gtccatttca
     2281 gaagccagaa gttcagcttg gctgggggag gggaaccgct cagggagggc ctcagtgcag
     2341 gaggggttgg ggggggtgct ttgggatatg aagctgggtg ggtgggtcgg tgggtagggg
     2401 gagcaccccg cctggtggcc agagagaagg gctgcctggg aaggtcacct ggaacttggg
     2461 tcatcacact ctcccttctc cagggagggg gtggcgacag ctccagacca gaccccccac
     2521 ctccgtccca gggccttgcc ccctccctta cttcctgtcc ctggccatct gttctcaaga
     2581 cgctattgcc aaagggatct ttgcgccgag caccctgtta gccctccagg gacctctcag
     2641 gctcagaggg aaccacactg ttcctcagac aggcaagctc ctctcgtctc tatccctttg
     2701 tactcacccc ccccccccgc cccattctct ccccactttc ccacctgagg cagccacccc
     2761 aggctccgag ggctctggag gccagggccg tgtctctgtc actcactcct gtccccagca
     2821 cctgcctgga acaggaagac gctcaggtcg ggctcaggcc atacagacct cgttaattag
     2881 cttggatgaa ggaggagcca ggaggtttgc cgagggtgtc gcccttggtt agattagggg
     2941 ggtgtgaggg agcacaccgg ggcctgaggc tgggcccctc cccaggccac ccgtccgcag
     3001 tatccttgtc tgtgggagga ggccacaccc ctctccccac tcagcctgga cacctgcacc
     3061 atccgtggag agctgggttg gggggggggt ctccccctca caccaggggc tcttcctact
     3121 gccaccctcc ccccttctct gcccgtttcc tgccccctcc catgcctcag aggggctctg
     3181 ggtaattcct ctgtccccct ccaccccttt ggcttggcct ttgtcttgca ggcctttcct
     3241 gcagaataat agaggaagca tcttctcggt ggctgtgttg ggggtgtggg aggaatcaga
     3301 acttcctcct ccttggggtg ggtgtggcca gaagccctgc tgatcatttc tcctccactg
     3361 gcaggtggag cctcattcat ctgtggcctc cttccagccc agttggaccc tggcagggac
     3421 caagggtcaa taaatgtttg ctgaattcac gtgcaaggtc aggtgatctg cctgcctctg
     3481 tgggtgtctc agccctgtgg agccctgtga cgctgggccc ctctgtctcg cctgtggggt
     3541 cagggcttgg ggaccagaca atgacagcaa gtcataggtg tttgaaatat ggagaaagaa
     3601 ttaatcctca tggtgacaga agtcctcctg gccaggccca tgaaactcca gtcacttggg
     3661 aatttggggt ggggcagggc ctggggctgc ttggagccct ggcttgtgag aggtgaggcc
     3721 ttagcacccc caccagaact cctacggttg ccagcagcct cttcctctcc gctggcacgc
     3781 actggcatgc cctggctcca gggcctgctc ccttttcccg aggaagaagc tgagaccaga
     3841 gggtcctgcg gctgtgcctg gctcctctct cctccatgga gccctggggg gcatactcat
     3901 cctaggatgc acccttgggc gaggaaggag gcccccaaga gcccccacct ggtattcagc
     3961 cttgtaaatg tactgaggtt gacctgcgtg accagtaaga tcctgtagaa gacgaggttg
     4021 cagggcatcc tggcctacgt ctttgtctca tattctccac tctgaggcag gccagctgtt
     4081 ctttgctatg gagaggccaa cagtgtggtg tttagaagca gatcctccgg ccctgtcgag
     4141 ccttcagatg agaccccagt cactgccggc atctcaaggg caacgctgag agactgagag
     4201 ccagaatcac ccagctgagc agctccttga ctcctatccc tcagaaactg tgcaacataa
     4261 taaacgtctg ttgatttaaa
//
LOCUS       XM_032647104             809 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of G-protein signaling 8
            (LOC116761298), mRNA.
ACCESSION   XM_032647104
VERSION     XM_032647104.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..809
                     /gene="LOC116761298"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 36 Proteins, and 92% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761298"
     CDS             267..809
                     /gene="LOC116761298"
                     /codon_start=1
                     /product="regulator of G-protein signaling 8"
                     /protein_id="XP_032502995.1"
                     /db_xref="GeneID:116761298"
                     /translation="MAALLMPRRNKGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKR
                     LSTEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLV
                     SKAHRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKDSYP
                     RFLRSKMYLDLLSQSQRRLS"
     misc_feature    402..776
                     /gene="LOC116761298"
                     /note="Regulator of G protein signaling (RGS) domain found
                     in the RGS8 protein; Region: RGS_RGS8; cd08711"
                     /db_xref="CDD:188666"
     misc_feature    order(495..503,507..512,591..596,606..608,612..614,
                     618..620,624..632,636..644,648..653,660..662,669..671,
                     723..725,732..740,747..749,756..758)
                     /gene="LOC116761298"
                     /note="G alpha interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188666"
ORIGIN      
        1 gtcacctgca gtgaggaggc acctaccttg cacacataca agcgagcctg tgtgctgagt
       61 gcctctgacc ttggtgctga taatgaccag agcgccttac ccgcaacctt tctgactatc
      121 ccgctggcaa agacccgcag gccacgagga ctggtcaaag acggtgagag gacgtgaaag
      181 ggtgaatccc tgtgtcccgc agtctcatct cccgccctga cgtccctgca caccagccag
      241 agggttaacc gtaagcgggt gcctgtatgg ccgctttact gatgccacgc aggaacaaag
      301 ggatgaggac tcgactggga tgcctgtctc acaagtccga ctcatgtagt gatttcacag
      361 ctattcttcc cgacaaaccc aaccgtgctc taaagagact atccacggaa gaagctacga
      421 ggtgggcaga ttcctttgat gtgcttctct cccataagta tggggtggct gcgttccgcg
      481 ccttcctgaa gacggagttc agtgaagaga acctggagtt ctggttggcc tgtgaggagt
      541 tcaagaagac caggtcaact gcaaaactgg tctccaaggc ccataggatc tttgaagagt
      601 ttgtggatgt gcaggctccg cgggaggtaa acatagactt ccagacccga gaagccacaa
      661 ggaagaacat gcaggaacca tccctgactt gctttgacca agcccaggga aaagtacaca
      721 gtctcatgga gaaagactct tacccccggt tcctgaggtc caaaatgtac ttagatttgc
      781 tgtcccagag ccagaggcgg ctcagttag
//
LOCUS       XM_032647117            1221 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 61-like
            (LOC116761304), mRNA.
ACCESSION   XM_032647117
VERSION     XM_032647117.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-491               VOSU01000011.1     46479719-46480209   c
            492-617             VOSU01000011.1     46475702-46475827   c
            618-618             "N"                1-1
            619-826             VOSU01000011.1     46475494-46475701   c
            827-1221            VOSU01000011.1     46470089-46470483   c
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1221
                     /gene="LOC116761304"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116761304"
     CDS             477..1103
                     /gene="LOC116761304"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1056..1058,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: transmembrane protein
                     61-like"
                     /protein_id="XP_032503008.1"
                     /db_xref="GeneID:116761304"
                     /translation="MAARKTCDSGRVASTLCYCVTVTGMVVLVAGTLCFAWWSEEDAE
                     EEPXQPALPTGRPEPEAPGPLFRSVSFFCCGAGGLLLLSVKASTKGPPRWDSYHLSRD
                     LYYLTVEPLEKESCRTPEVVAIPTYEEVVHCQLAEGPLTPPAYPVEEDPERSASGDAL
                     LGAQPPLPPPSYESLILADGGFSGETTPGAACSXPGPVQIAGEEVKGF"
     misc_feature    534..1064
                     /gene="LOC116761304"
                     /note="TMEM61 protein family; Region: TMEM61; pfam15105"
                     /db_xref="CDD:464506"
ORIGIN      
        1 tccgaggaga ggtggggccg gccgctccct gagcccgagc ccagggtcca ggccgcagtc
       61 ggccaagccc gaagcgtggg cgggagccag gggatgatca tcaccggagt cgacagcgaa
      121 gccggactcc acgcgcccct cggcgccccc acccggtggc cgagaccctg cgcggtgaag
      181 cgggctttgc accgctccca ccgggtcggg gcggcgatcg gacgggacgc acggcggcgg
      241 acgagatgcc ctggaccaga cccggagccg gacagtagcg cttctgcggg ctcggagagc
      301 tgggctgggg aacggtcgcc gggccgcccc taacgccggg cgccccctgc agaccagaga
      361 gaccaccctt cccaggttcg ctctgcccat gggcgcgaca accatcatgc cttcacgtga
      421 ctccgctcgg ctcgccaggc tcccagctcc gggaccacgc ctgaccctgc agcgcgatgg
      481 ctgcgcgcaa gacgtgtgac agcggccgtg tggcctccac cctgtgctac tgcgtgacgg
      541 tcaccggcat ggtggttctg gtggccggga cactctgctt cgcctggtgg agtgaagaag
      601 atgcagaaga agagccangc cagccggctc tgcccacagg acgccctgag cctgaggccc
      661 ccggtcccct gttcaggtcg gtcagcttct tctgctgcgg tgcaggtggc ctgctgctgc
      721 tgtctgtcaa ggccagcacc aaggggccgc ctcgatggga ctcatatcac ctctccagag
      781 acctgtacta cctcactgtg gagcccttgg agaaggagag ctgcaggacc ccagaggtgg
      841 ttgccatccc cacttatgag gaggtcgtgc actgccaact ggctgagggg cccctgacac
      901 cacctgcata ccccgtggag gaagacccgg agcgcagtgc ctcgggtgat gccctgcttg
      961 gggcccagcc ccccttgcct ccgcccagct acgagagcct catcctcgct gacggtggct
     1021 tctctggaga gacaacacct ggggctgcgt gctcctgacc aggcccggtt cagattgcag
     1081 gggaggaagt taaaggcttc tagcaggcct ggaagccaga agcaaatgat gggcttcttc
     1141 tagcctctag tacagtgcct ggtacacagc aggcactcag tgttgctgaa tgctgtttta
     1201 tttttctatt gctgtgtaac a
//
LOCUS       XM_032647130            3793 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inositol polyphosphate-5-phosphatase B
            (INPP5B), mRNA.
ACCESSION   XM_032647130
VERSION     XM_032647130.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                VOSU01000011.1     30772127-30772192   c
            67-131              VOSU01000011.1     30771353-30771417   c
            132-226             VOSU01000011.1     30770881-30770975   c
            227-324             VOSU01000011.1     30769924-30770021   c
            325-354             VOSU01000011.1     30769760-30769789   c
            355-465             VOSU01000011.1     30768374-30768484   c
            466-554             VOSU01000011.1     30764161-30764249   c
            555-555             "N"                1-1
            556-849             VOSU01000011.1     30763867-30764160   c
            850-946             VOSU01000011.1     30746448-30746544   c
            947-1114            VOSU01000011.1     30744674-30744841   c
            1115-1216           VOSU01000011.1     30742749-30742850   c
            1217-1331           VOSU01000011.1     30741836-30741950   c
            1332-1448           VOSU01000011.1     30741387-30741503   c
            1449-1636           VOSU01000011.1     30740536-30740723   c
            1637-1748           VOSU01000011.1     30738898-30739009   c
            1749-1858           VOSU01000011.1     30736091-30736200   c
            1859-1994           VOSU01000011.1     30735145-30735280   c
            1995-2105           VOSU01000011.1     30733461-30733571   c
            2106-2268           VOSU01000011.1     30732392-30732554   c
            2269-2504           VOSU01000011.1     30731089-30731324   c
            2505-2618           VOSU01000011.1     30729239-30729352   c
            2619-2703           VOSU01000011.1     30727403-30727487   c
            2704-2831           VOSU01000011.1     30726901-30727028   c
            2832-2943           VOSU01000011.1     30725578-30725689   c
            2944-3793           VOSU01000011.1     30724480-30725329   c
FEATURES             Location/Qualifiers
     source          1..3793
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3793
                     /gene="INPP5B"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 long SRA reads, 15 Proteins, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761310"
     CDS             75..3059
                     /gene="INPP5B"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: type II inositol
                     1,4,5-trisphosphate 5-phosphatase"
                     /protein_id="XP_032503021.1"
                     /db_xref="GeneID:116761310"
                     /translation="MDQSVAIQETLAEGEYCIIAVQGALCEGESRQSRLLGLVCYRPE
                     RGSQEHALFLYTHRRMAVTGDDVSLDQIVPISRDFALEEVSLDGEVYFLGSDVTVQLD
                     TAELSLVFQLPFGSQTRTFLQEVARACPAFNPTALDPKFLWLSRYRRKEPEPEPPTPR
                     XWNSAQGTRPGRSGIGGGRYRSRKARRGLEEARLQGRAPFSLGRSYGADRPLIGEGGT
                     RGRAPLMVERGRGSGRRDEELEEAGREMSAAAGSRERESAGGSSFDESRPDGKGLLVD
                     QSSWGQDKPENLLPRQNKSKSEITDMVRSSTITVSDKAHILSMQKFGLRDTIVKSHLM
                     QKEEDYTYIQNFRFFVGTYNVNGQSPKECLQPWLSHGIQAPDVYCVGFQELDLSKEAF
                     FFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETV
                     GTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHTEEYERRNQDYKDICSRMQFRQV
                     DPSLPPLTISKHDVILWLGDLNYRIEELDVEKVKKLIEEKAFQTLYANDQLRAQVAAK
                     AVFEGFNEGELTFQPTYKYDTGSDDWDTSDKCRAPAWCDRVLWKGKNITQLSYQSHMA
                     LKTSDHKPVSSVFDIGVRVVNEELYRKTLEEIVRSLDKMENDSIPSVSLSKREFCFQN
                     VKYMQLQIESFTIRNGQVPCQFEFINKPDEESYCKQWLSANPSRGFLLPDSAIEIELE
                     LFVNKTTATKLNSGEDKIEDILVLHLDRGKDYFLSVSGNYLPSCFGSPIHTLCYMKEP
                     ILDLPLESIRELTLMQLQTEDDGSQLERPMDIPKELLMMVNYLYRNAIQQEDLFQQPG
                     LRLEFEHIRDCLDTGMIDTLSASNHSIAEALLLFLESLPEPVICYSVYHNCLECSGNL
                     TASKQVIATLPACHRNVFIYLMAFLQELLKNSAKNHLDGNILASIFGSLLLRNPAGHQ
                     KLEVAEKKKAQEFIHQFLCNSP"
     misc_feature    75..512
                     /gene="INPP5B"
                     /note="Type II inositol 1,4,5-trisphosphate 5-phosphatase
                     PH domain; Region: INPP5B_PH; pfam16776"
                     /db_xref="CDD:465268"
     misc_feature    1110..1991
                     /gene="INPP5B"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of Type II inositol polyphosphate
                     5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and
                     related proteins; Region: INPP5c_INPP5B; cd09093"
                     /db_xref="CDD:197327"
     misc_feature    order(1134..1136,1140..1142,1224..1226,1233..1235,
                     1239..1241,1248..1250,1434..1436,1452..1457,1515..1517,
                     1524..1529,1656..1658,1662..1664,1668..1670,1821..1826,
                     1863..1865,1869..1871,1887..1889,1959..1964)
                     /gene="INPP5B"
                     /note="putative active site [active]"
                     /db_xref="CDD:197327"
     misc_feature    order(1134..1136,1224..1226,1515..1517,1656..1658,
                     1662..1664,1887..1889,1959..1964)
                     /gene="INPP5B"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197327"
     misc_feature    order(1140..1142,1224..1226,1959..1961)
                     /gene="INPP5B"
                     /note="Mg binding site [ion binding]; other site"
                     /db_xref="CDD:197327"
     misc_feature    order(1224..1226,1233..1235,1239..1241,1248..1250,
                     1434..1436,1452..1457,1515..1517,1524..1529,1668..1670,
                     1821..1826,1863..1865,1869..1871,1959..1961)
                     /gene="INPP5B"
                     /note="putative PI/IP binding site [chemical binding];
                     other site"
                     /db_xref="CDD:197327"
     misc_feature    order(1515..1517,1662..1664,1962..1964)
                     /gene="INPP5B"
                     /note="putative phosphate binding site [ion binding];
                     other site"
                     /db_xref="CDD:197327"
     misc_feature    2391..3053
                     /gene="INPP5B"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain present in OCRL1-like proteins.
                     OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins
                     contain two conserved domains: a central inositol
                     polyphosphate 5-phosphatase domain and...; Region:
                     RhoGAP_OCRL1; cd04380"
                     /db_xref="CDD:239845"
     misc_feature    order(2631..2633,2736..2738,2748..2750,2937..2939,
                     2946..2951,3024..3026)
                     /gene="INPP5B"
                     /note="putative GTPase interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239845"
     misc_feature    2631..2633
                     /gene="INPP5B"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239845"
ORIGIN      
        1 gtagtctctg gctgggcccc ggggccgcgg tgttccgcac gcccagcagc ggtgacagct
       61 caggaggggc cagcatggac cagtctgtgg cgatccagga gaccctggct gagggggagt
      121 actgcatcat cgcggtgcaa ggagcgctgt gtgagggaga gagcaggcag agccgcctcc
      181 tgggactcgt gtgttaccgc ccggaacgtg gtagccagga acatgctctc ttcctgtaca
      241 cacaccggag gatggccgtt accggggacg atgtctcctt ggaccagatc gtgccgatct
      301 ctcgggattt cgctctggaa gaagtgtccc tggatggtga agtctacttt cttggctcag
      361 atgtcaccgt ccagctggac acagcggagc tcagcctcgt attccagctc ccctttggtt
      421 cacaaaccag aacgtttctc caggaagtcg ccagggcctg tccagccttc aaccccacgg
      481 ccctggaccc taagtttctg tggctgtctc gctacaggcg caaagagccg gagcccgagc
      541 cgcccacgcc gcgcngctgg aactcagccc agggcacccg gcccgggcgc tctggaattg
      601 gcggaggcag gtatcgatct cggaaggcgc gaaggggatt ggaggaggcc aggcttcagg
      661 ggcgggcccc gttctctttg gggcggagct atggagcaga ccggcctctg attggcgagg
      721 gtggcacgcg ggggcgggcc cctctgatgg tggaacgggg gcggggctcc gggcggcgtg
      781 atgaagagct tgaggaagca ggcagggaaa tgtccgccgc cgccggctct cgggagcgcg
      841 aatctgcagg tggttcttcc tttgatgagt caagaccgga tgggaaaggt ctgcttgtgg
      901 accaaagctc ctggggtcag gataaaccag aaaacttgct cccaagacag aataagtcca
      961 aatctgaaat aactgacatg gttcgctcct ccactatcac agtatcagac aaggctcata
     1021 ttttatccat gcagaagttt ggactgcgag atacaatcgt gaaatcacat ctaatgcaga
     1081 aagaagagga ttatacctat atccagaact tcaggttttt tgtgggaaca tacaatgtga
     1141 atggacagtc ccctaaggag tgcctccagc cctggctcag ccatggtatc caggccccag
     1201 atgtatactg tgtggggttc caggagcttg atttgagtaa agaagccttt ttcttccatg
     1261 ataccccaaa ggaggaagag tggtttaaag ctgtatcaga gggtcttcat ccagatgcca
     1321 aatatgcaaa ggtaaagctc atccgactgg ttgggattat gctgctgtta tatgtcaaac
     1381 aagagcatgc agcgtacatc tcagaagtgg aagctgagac ggtggggaca ggaatcatgg
     1441 ggaggatggg taacaaagga ggtgtggcaa tccggttcca gtttcacaac accagcatct
     1501 gcgttgtcaa ttcccacctg gcagcccaca cggaggagta tgagaggagg aaccaagact
     1561 acaaagacat ttgttctcga atgcagtttc gtcaggttga cccaagcctc ccccctctca
     1621 ccatcagcaa gcacgatgtg atcttgtggc tgggggacct caactacaga atagaagagc
     1681 tggatgtgga aaaagtgaaa aagctcatcg aagagaaggc ctttcaaacc ctgtatgcga
     1741 atgaccagct gagagctcag gtcgctgcaa aggctgtctt cgaaggcttc aacgagggtg
     1801 agctcacgtt ccagcccacc tacaagtatg acactggctc tgacgattgg gataccagcg
     1861 acaagtgtcg tgctcccgcc tggtgtgacc gggtcctctg gaaagggaag aacatcactc
     1921 agctgagcta ccagagccac atggccctga agaccagtga ccacaagccc gtcagctcag
     1981 tgtttgacat cggggtgagg gtcgtaaatg aagagcttta tcggaagact ctggaggaga
     2041 ttgttcgctc cctggataag atggaaaatg acagcattcc ttctgtgtcc ctctccaagc
     2101 gagagttctg ttttcagaac gtgaagtaca tgcagctgca gatagagtcc tttaccattc
     2161 ggaatggaca agtaccgtgt cagtttgaat tcatcaacaa gcctgacgaa gagtcttact
     2221 gtaagcagtg gctgagcgcc aaccccagcc gagggttcct cctgccagat tctgccattg
     2281 agattgaatt ggagctcttt gtaaataaga ccacagctac gaagctcaac tcaggtgaag
     2341 acaaaatcga ggacattctg gttttacact tggacagggg aaaggattac tttttgtctg
     2401 tgtctgggaa ctacctgccc agctgttttg gatcgcccat tcacacgttg tgctacatga
     2461 aggagccaat cttggacctg ccgctagaaa gtattagaga gctgactctg atgcaacttc
     2521 agactgaaga tgatgggagc cagttggaaa gacccatgga catccccaaa gagctcttga
     2581 tgatggttaa ttacctgtac cgaaatgcca tccagcagga agatctgttt cagcagccag
     2641 gcctgaggtt ggaatttgag catatcaggg actgtttgga tactggaatg attgataccc
     2701 tctctgctag caatcactcc atagccgaag ccctgctgct tttcctggag agcctgccag
     2761 agcccgtcat ctgttacagc gtctaccaca actgcttgga atgttctggc aacctcacag
     2821 caagtaaaca ggtcattgct acccttcccg catgccacag aaatgtcttc atctacttga
     2881 tggcgttttt gcaagaactg ctgaaaaatt cagcaaaaaa tcatttggat ggtaatattc
     2941 tagctagcat atttggtagc ttactgcttc gaaacccagc tggtcaccaa aagcttgaag
     3001 tggcagagaa gaagaaggct caagaattta ttcaccagtt cctctgcaac tcaccctgag
     3061 cctgtccatc tcctctccta ctctgcctga ggcagccaat taccagcccc acctgtctca
     3121 gctccaaagc ttccctaaga gcacgtgagc ccactgggat gccacagtgg cagctgcctg
     3181 tttcctgagc ccagactgcc ctccccacca tgactgccac actcagtgct gctgcgagct
     3241 gtgaagacaa tgaggggaaa tccaccacaa taaaactgac attcaatgtt caaatttagt
     3301 tacttaacag atagatcttt tttttttttt ttttttaatg tttaaacgac tgtacttctt
     3361 gtgctcactc aacctgcctc cagggcatat agtgccttcc ctgtagcttg ggccaggctc
     3421 cccatgatca gatatttgaa caaactttgg agtcctgaag gatggatgag ttggacggca
     3481 agaatgcaaa tggaagctgc tggataaaga gcccacagcc accccagatg cttccagttc
     3541 tctgaggaca tgtgtgtaca catattgcaa accctacccc acttcccact cagatatggc
     3601 tcaacaactc tggagctggc cactcagctt ccgagggcaa tgtagtggct tgaaaatgaa
     3661 aatattgaag aaattggtgt tctggtgaca caagtggaat tttctgggcc aacaaatcct
     3721 ccaaactgta tataatgcat cccctctctt atatgtgtaa tatattttaa tgataaatgt
     3781 atttttaaca gtg
//
LOCUS       XM_032647158            1665 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tektin 2 (TEKT2), transcript variant X1,
            mRNA.
ACCESSION   XM_032647158
VERSION     XM_032647158.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1665
                     /gene="TEKT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116761319"
     CDS             644..1654
                     /gene="TEKT2"
                     /codon_start=1
                     /product="tektin-2"
                     /protein_id="XP_032503049.1"
                     /db_xref="GeneID:116761319"
                     /translation="MKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVKDPVEEELH
                     KEVEVTEATKKALQQKISQAFEKLCLLQEVRQQLNSDHRGKMETVDIDRGCFSLNLKS
                     PNISLKINPTRVPNGSTTLQQWDDRSQFNKNRAEAEMKGAIELREAIALTIAKTNNEL
                     EAQRVATEFAFRKRLWEMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRRKLQNLK
                     LCHTRLETRTYRPNMELCRDQAQCGLTEEAQQLEATTAALKQKLAQAQDALDALYQHL
                     ARLQADIACKTNSMLLDTKCMDTRRKLTMPAEKFVPEVDTFTRTTNRTLSPLKTCQLE
                     LT"
     misc_feature    <644..1555
                     /gene="TEKT2"
                     /note="Tektin family; Region: Tektin; pfam03148"
                     /db_xref="CDD:460827"
ORIGIN      
        1 gtttccaagc aggcttccag caggaagggg cttggagcga aacggacagg agtatatcct
       61 ttggaggggc tttgatccag gaaaggcttt cctcagcggt ctcctgcagc cttgtttgct
      121 ccctccagca gaggtgggtg tcttggaaca ggcctgggat ccccgagcct ttggctcctg
      181 caccatggcc accctgagtg tcaagcccag tccacgtttc cagttgccgg actggcacac
      241 caacagctac ctgttgtcca ctaacgctga gcggcagcga gatgcctcac accagatccg
      301 ccaggaggcc caggtcctct gcaatgagac caacaaccag accatttggg acgaacatga
      361 caataggact cgactggcag agaggattga tactgtcaac cggtggaagg agatgctgga
      421 caagtgtctg acagatttag atgctgagat cgacgccctg acacaggcag ggagccaggg
      481 cagggtgcca ggagaccctg cctgcaagga cctccctctt cctcccctct tccgggtcag
      541 ggtatttggt ggcatgtcca tcagagtcac ttggcctaag tggggatgag agctgcttcc
      601 cagcggatgg ccccaccagc ctcctgtgcc ctctcttttc tagatgaagg agtcagcaga
      661 gcaaaacctg caggccaaga acctgcctct ggatgtggcc attgagtgcc tgaccctgcg
      721 ggagagtcgg cgtgacattg atgtggtgaa ggaccccgtg gaggaagagc tgcacaaaga
      781 ggtagaggtc actgaagcca ccaagaaggc cttgcaacag aagatcagcc aggcctttga
      841 gaagctctgc ctcctgcagg aagtccgaca gcagctcaac tctgaccatc ggggcaaaat
      901 ggagacagtg gacattgaca gaggctgctt ctctctcaac ctcaagtccc cgaacatctc
      961 tctgaagatt aatcccacac gtgtccccaa cggctccacc acactccagc agtgggatga
     1021 ccgcagtcag ttcaacaaga accgagcaga ggctgagatg aaaggggcca tagagctgag
     1081 ggaggccatc gccctaacta ttgccaagac caacaacgaa ctggaagccc agagggttgc
     1141 aacggaattt gccttcagga agcggctgtg ggagatggag aaagtgtaca gtgagctcaa
     1201 gtggcaagag aagaatacct tggaggagat tgccgagctg caggaggaca tccggcatct
     1261 ggaggaggat ctgcgcagaa agttacagaa cctgaagcta tgccacaccc ggctagagac
     1321 caggacctac cggcccaaca tggaactctg cagggaccag gcacagtgcg gcctcactga
     1381 ggaggcccag cagttagagg ccaccactgc tgctctgaag cagaagctgg cgcaggcaca
     1441 ggatgctctg gacgccctgt accagcatct ggcccggctg caggctgaca tcgcctgcaa
     1501 gaccaactcc atgctcttgg acaccaagtg catggacacc cggcggaagc tgaccatgcc
     1561 ggctgagaag tttgtgccgg aggtggacac cttcacccgc accacaaacc gcaccctgag
     1621 tccactcaaa acctgccagc tggagctaac ctagcgaggg ggctg
//
LOCUS       XM_032647167            1697 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tektin 2 (TEKT2), transcript variant X2,
            mRNA.
ACCESSION   XM_032647167
VERSION     XM_032647167.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1697
                     /gene="TEKT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116761319"
     CDS             676..1686
                     /gene="TEKT2"
                     /codon_start=1
                     /product="tektin-2"
                     /protein_id="XP_032503058.1"
                     /db_xref="GeneID:116761319"
                     /translation="MKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVKDPVEEELH
                     KEVEVTEATKKALQQKISQAFEKLCLLQEVRQQLNSDHRGKMETVDIDRGCFSLNLKS
                     PNISLKINPTRVPNGSTTLQQWDDRSQFNKNRAEAEMKGAIELREAIALTIAKTNNEL
                     EAQRVATEFAFRKRLWEMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRRKLQNLK
                     LCHTRLETRTYRPNMELCRDQAQCGLTEEAQQLEATTAALKQKLAQAQDALDALYQHL
                     ARLQADIACKTNSMLLDTKCMDTRRKLTMPAEKFVPEVDTFTRTTNRTLSPLKTCQLE
                     LT"
     misc_feature    <676..1587
                     /gene="TEKT2"
                     /note="Tektin family; Region: Tektin; pfam03148"
                     /db_xref="CDD:460827"
ORIGIN      
        1 ggccccaaca acaacaacgc cgccgccgcc gccgccgcgc cgcccggcgg tgaccaagct
       61 gatcgcgggc tgtgatgacc cgcgcgcgga gtaggggtgc ctagcaaccg ggggcgctta
      121 acagaggagc cggcgaaggg aggcggaagt gcgcgctggg aagaggtggg tgtcttggaa
      181 caggcctggg atccccgagc ctttggctcc tgcaccatgg ccaccctgag tgtcaagccc
      241 agtccacgtt tccagttgcc ggactggcac accaacagct acctgttgtc cactaacgct
      301 gagcggcagc gagatgcctc acaccagatc cgccaggagg cccaggtcct ctgcaatgag
      361 accaacaacc agaccatttg ggacgaacat gacaatagga ctcgactggc agagaggatt
      421 gatactgtca accggtggaa ggagatgctg gacaagtgtc tgacagattt agatgctgag
      481 atcgacgccc tgacacaggc agggagccag ggcagggtgc caggagaccc tgcctgcaag
      541 gacctccctc ttcctcccct cttccgggtc agggtatttg gtggcatgtc catcagagtc
      601 acttggccta agtggggatg agagctgctt cccagcggat ggccccacca gcctcctgtg
      661 ccctctcttt tctagatgaa ggagtcagca gagcaaaacc tgcaggccaa gaacctgcct
      721 ctggatgtgg ccattgagtg cctgaccctg cgggagagtc ggcgtgacat tgatgtggtg
      781 aaggaccccg tggaggaaga gctgcacaaa gaggtagagg tcactgaagc caccaagaag
      841 gccttgcaac agaagatcag ccaggccttt gagaagctct gcctcctgca ggaagtccga
      901 cagcagctca actctgacca tcggggcaaa atggagacag tggacattga cagaggctgc
      961 ttctctctca acctcaagtc cccgaacatc tctctgaaga ttaatcccac acgtgtcccc
     1021 aacggctcca ccacactcca gcagtgggat gaccgcagtc agttcaacaa gaaccgagca
     1081 gaggctgaga tgaaaggggc catagagctg agggaggcca tcgccctaac tattgccaag
     1141 accaacaacg aactggaagc ccagagggtt gcaacggaat ttgccttcag gaagcggctg
     1201 tgggagatgg agaaagtgta cagtgagctc aagtggcaag agaagaatac cttggaggag
     1261 attgccgagc tgcaggagga catccggcat ctggaggagg atctgcgcag aaagttacag
     1321 aacctgaagc tatgccacac ccggctagag accaggacct accggcccaa catggaactc
     1381 tgcagggacc aggcacagtg cggcctcact gaggaggccc agcagttaga ggccaccact
     1441 gctgctctga agcagaagct ggcgcaggca caggatgctc tggacgccct gtaccagcat
     1501 ctggcccggc tgcaggctga catcgcctgc aagaccaact ccatgctctt ggacaccaag
     1561 tgcatggaca cccggcggaa gctgaccatg ccggctgaga agtttgtgcc ggaggtggac
     1621 accttcaccc gcaccacaaa ccgcaccctg agtccactca aaacctgcca gctggagcta
     1681 acctagcgag ggggctg
//
LOCUS       XM_032647176            1560 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tektin 2 (TEKT2), transcript variant X3,
            mRNA.
ACCESSION   XM_032647176
VERSION     XM_032647176.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1560
                     /gene="TEKT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116761319"
     CDS             539..1549
                     /gene="TEKT2"
                     /codon_start=1
                     /product="tektin-2"
                     /protein_id="XP_032503067.1"
                     /db_xref="GeneID:116761319"
                     /translation="MKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVKDPVEEELH
                     KEVEVTEATKKALQQKISQAFEKLCLLQEVRQQLNSDHRGKMETVDIDRGCFSLNLKS
                     PNISLKINPTRVPNGSTTLQQWDDRSQFNKNRAEAEMKGAIELREAIALTIAKTNNEL
                     EAQRVATEFAFRKRLWEMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRRKLQNLK
                     LCHTRLETRTYRPNMELCRDQAQCGLTEEAQQLEATTAALKQKLAQAQDALDALYQHL
                     ARLQADIACKTNSMLLDTKCMDTRRKLTMPAEKFVPEVDTFTRTTNRTLSPLKTCQLE
                     LT"
     misc_feature    <539..1450
                     /gene="TEKT2"
                     /note="Tektin family; Region: Tektin; pfam03148"
                     /db_xref="CDD:460827"
ORIGIN      
        1 aggcggaagt gcgcgctggg aagcagaggt gggtgtcttg gaacaggcct gggatccccg
       61 agcctttggc tcctgcacca tggccaccct gagtgtcaag cccagtccac gtttccagtt
      121 gccggactgg cacaccaaca gctacctgtt gtccactaac gctgagcggc agcgagatgc
      181 ctcacaccag atccgccagg aggcccaggt cctctgcaat gagaccaaca accagaccat
      241 ttgggacgaa catgacaata ggactcgact ggcagagagg attgatactg tcaaccggtg
      301 gaaggagatg ctggacaagt gtctgacaga tttagatgct gagatcgacg ccctgacaca
      361 ggcagggagc cagggcaggg tgccaggaga ccctgcctgc aaggacctcc ctcttcctcc
      421 cctcttccgg gtcagggtat ttggtggcat gtccatcaga gtcacttggc ctaagtgggg
      481 atgagagctg cttcccagcg gatggcccca ccagcctcct gtgccctctc ttttctagat
      541 gaaggagtca gcagagcaaa acctgcaggc caagaacctg cctctggatg tggccattga
      601 gtgcctgacc ctgcgggaga gtcggcgtga cattgatgtg gtgaaggacc ccgtggagga
      661 agagctgcac aaagaggtag aggtcactga agccaccaag aaggccttgc aacagaagat
      721 cagccaggcc tttgagaagc tctgcctcct gcaggaagtc cgacagcagc tcaactctga
      781 ccatcggggc aaaatggaga cagtggacat tgacagaggc tgcttctctc tcaacctcaa
      841 gtccccgaac atctctctga agattaatcc cacacgtgtc cccaacggct ccaccacact
      901 ccagcagtgg gatgaccgca gtcagttcaa caagaaccga gcagaggctg agatgaaagg
      961 ggccatagag ctgagggagg ccatcgccct aactattgcc aagaccaaca acgaactgga
     1021 agcccagagg gttgcaacgg aatttgcctt caggaagcgg ctgtgggaga tggagaaagt
     1081 gtacagtgag ctcaagtggc aagagaagaa taccttggag gagattgccg agctgcagga
     1141 ggacatccgg catctggagg aggatctgcg cagaaagtta cagaacctga agctatgcca
     1201 cacccggcta gagaccagga cctaccggcc caacatggaa ctctgcaggg accaggcaca
     1261 gtgcggcctc actgaggagg cccagcagtt agaggccacc actgctgctc tgaagcagaa
     1321 gctggcgcag gcacaggatg ctctggacgc cctgtaccag catctggccc ggctgcaggc
     1381 tgacatcgcc tgcaagacca actccatgct cttggacacc aagtgcatgg acacccggcg
     1441 gaagctgacc atgccggctg agaagtttgt gccggaggtg gacaccttca cccgcaccac
     1501 aaaccgcacc ctgagtccac tcaaaacctg ccagctggag ctaacctagc gagggggctg
//
LOCUS       XM_032647186            1638 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tektin 2 (TEKT2), transcript variant X4,
            mRNA.
ACCESSION   XM_032647186
VERSION     XM_032647186.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1638
                     /gene="TEKT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116761319"
     CDS             617..1627
                     /gene="TEKT2"
                     /codon_start=1
                     /product="tektin-2"
                     /protein_id="XP_032503077.1"
                     /db_xref="GeneID:116761319"
                     /translation="MKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVKDPVEEELH
                     KEVEVTEATKKALQQKISQAFEKLCLLQEVRQQLNSDHRGKMETVDIDRGCFSLNLKS
                     PNISLKINPTRVPNGSTTLQQWDDRSQFNKNRAEAEMKGAIELREAIALTIAKTNNEL
                     EAQRVATEFAFRKRLWEMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRRKLQNLK
                     LCHTRLETRTYRPNMELCRDQAQCGLTEEAQQLEATTAALKQKLAQAQDALDALYQHL
                     ARLQADIACKTNSMLLDTKCMDTRRKLTMPAEKFVPEVDTFTRTTNRTLSPLKTCQLE
                     LT"
     misc_feature    <617..1528
                     /gene="TEKT2"
                     /note="Tektin family; Region: Tektin; pfam03148"
                     /db_xref="CDD:460827"
ORIGIN      
        1 gtttccaagc aggcttccag caggaagggg cttggagcga aacggacagg agtatatcct
       61 ttggaggggc tttgatccag gaaaggcttt cctcagcggt ctcctgcagc cttgtttgct
      121 ccctccagca gaggtgggtg tcttggaaca ggcctgggat ccccgagcct ttggctcctg
      181 caccatggcc accctgagtg tcaagcccag tccacgtttc cagttgccgg actggcacac
      241 caacagctac ctgttgtcca ctaacgctga gcggcagcga gatgcctcac accagatccg
      301 ccaggaggcc cagaccattt gggacgaaca tgacaatagg actcgactgg cagagaggat
      361 tgatactgtc aaccggtgga aggagatgct ggacaagtgt ctgacagatt tagatgctga
      421 gatcgacgcc ctgacacagg cagggagcca gggcagggtg ccaggagacc ctgcctgcaa
      481 ggacctccct cttcctcccc tcttccgggt cagggtattt ggtggcatgt ccatcagagt
      541 cacttggcct aagtggggat gagagctgct tcccagcgga tggccccacc agcctcctgt
      601 gccctctctt ttctagatga aggagtcagc agagcaaaac ctgcaggcca agaacctgcc
      661 tctggatgtg gccattgagt gcctgaccct gcgggagagt cggcgtgaca ttgatgtggt
      721 gaaggacccc gtggaggaag agctgcacaa agaggtagag gtcactgaag ccaccaagaa
      781 ggccttgcaa cagaagatca gccaggcctt tgagaagctc tgcctcctgc aggaagtccg
      841 acagcagctc aactctgacc atcggggcaa aatggagaca gtggacattg acagaggctg
      901 cttctctctc aacctcaagt ccccgaacat ctctctgaag attaatccca cacgtgtccc
      961 caacggctcc accacactcc agcagtggga tgaccgcagt cagttcaaca agaaccgagc
     1021 agaggctgag atgaaagggg ccatagagct gagggaggcc atcgccctaa ctattgccaa
     1081 gaccaacaac gaactggaag cccagagggt tgcaacggaa tttgccttca ggaagcggct
     1141 gtgggagatg gagaaagtgt acagtgagct caagtggcaa gagaagaata ccttggagga
     1201 gattgccgag ctgcaggagg acatccggca tctggaggag gatctgcgca gaaagttaca
     1261 gaacctgaag ctatgccaca cccggctaga gaccaggacc taccggccca acatggaact
     1321 ctgcagggac caggcacagt gcggcctcac tgaggaggcc cagcagttag aggccaccac
     1381 tgctgctctg aagcagaagc tggcgcaggc acaggatgct ctggacgccc tgtaccagca
     1441 tctggcccgg ctgcaggctg acatcgcctg caagaccaac tccatgctct tggacaccaa
     1501 gtgcatggac acccggcgga agctgaccat gccggctgag aagtttgtgc cggaggtgga
     1561 caccttcacc cgcaccacaa accgcaccct gagtccactc aaaacctgcc agctggagct
     1621 aacctagcga gggggctg
//
LOCUS       XM_032647199            5992 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell division cycle 73 (CDC73), mRNA.
ACCESSION   XM_032647199
VERSION     XM_032647199.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5992
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5992
                     /gene="CDC73"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 30 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761332"
     CDS             246..1841
                     /gene="CDC73"
                     /codon_start=1
                     /product="parafibromin"
                     /protein_id="XP_032503090.1"
                     /db_xref="GeneID:116761332"
                     /translation="MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWG
                     TGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEA
                     STSASIDRSAPLEIGLQRSTQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGH
                     KEGIVQTEQIRSLSEAMSVEKIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEV
                     DVTRDIVSRERVWRTRTTILQSTGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPV
                     DPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASARKTQT
                     PAAQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLKFVPSDEK
                     KKQGCQRENETLIQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQGP
                     AWQFKGWPWLLPDGSPVDIFAKIKAFHLKYDEVRLDPNVQKWDVTVLELSYHKRHLDR
                     PVFLRFWETLDRYMVKHKSHLRF"
     misc_feature    246..1136
                     /gene="CDC73"
                     /note="Paf1 complex subunit CDC73 N-terminal; Region:
                     CDC73_N; pfam16050"
                     /db_xref="CDD:464994"
     misc_feature    1314..1805
                     /gene="CDC73"
                     /note="RNA pol II accessory factor, Cdc73 family,
                     C-terminal; Region: CDC73_C; pfam05179"
                     /db_xref="CDD:461570"
ORIGIN      
        1 gagatcaggc gttctccgcg ggcagcccgc ggcggggcct tgcctgctag cgcggggtcc
       61 tcggcggcct gggtggctcg ttcctcagct gctgtcgtag gcgcggacag ctgccagtgt
      121 ggctgcagtt ggctcgcggc ggcggcggcg gcggcggccg aggcgggggt tgaggcgaga
      181 ggcgaagagg gcggcgggcg cggcggcggc ggagcccggg gcgggcggca gcgagggggg
      241 cgaagatggc ggacgtgctc agcgtcctgc gacagtacaa cattcagaag aaggagattg
      301 tggtgaaagg ggacgaagtg atcttcggcg agttctcctg gcccaagaat gtgaagacca
      361 actacgtggt ttgggggact gggaaggaag gccaacccag agaatactac acattggatt
      421 ctatcttatt tctacttaat aatgtccacc tatctcatcc tgtttatgtc cgacgtgcag
      481 ctactgaaaa tattccggtg gttagaagac ctgaccgaaa agatctactt ggatatctca
      541 atggtgaagc atcaacatcg gccagtatag acagaagtgc ccctctagaa ataggtctgc
      601 agagatctac tcaagtcaaa cgagctgcag atgaagtttt ggcagaagca aaaaaaccgc
      661 gaattgagga tgaagagtgt gtacgccttg ataaagagag attggctgct cgtttggagg
      721 gtcacaaaga agggattgta cagactgaac agatcaggtc tttgtccgaa gctatgtcag
      781 tggaaaaaat tgctgcaatc aaagccaaaa ttatggctaa gaaacgatct accatcaaga
      841 ctgacttaga tgatgatata actgccctaa aacagaggag ttttgtggat gctgaagtag
      901 acgtgacccg agatattgtc agcagagaaa gggtgtggag gacgcgaaca actatcttac
      961 agagcacagg aaagaatttt tccaagaata tttttgcaat tcttcaatca gtaaaagcca
     1021 gagaagaagg gcgtgcacct gaacagcgac cggccccaaa tgcggcacct gtggatccca
     1081 cactgcgtac caagcagcct attccagctg cctacaacag gtacgaccag gaaagattca
     1141 aaggaaaaga agaaacggaa ggcttcaaaa ttgacactat gggcacctat catggtatga
     1201 cgctgaagtc tgtaacggag ggtgcctcgg cccgtaagac gcagactcct gcagcacagc
     1261 cggtaccaag accagtttct caagccagac ctcccccaaa tcagaagaaa ggatctcgaa
     1321 cacccattat cataattcct gcagctacca cctctttaat aaccatgctt aatgcaaagg
     1381 accttctaca ggacctgaag tttgtcccat cagatgaaaa gaagaaacaa ggctgccaac
     1441 gagaaaatga aactctaata cagagaagaa aagaccagat gcaaccaggg ggcactgcaa
     1501 ttagtgtcac agttccttac agagtagtag accagcccct taaactaatg cctcaagact
     1561 gggaccgggt tgtagcagtt tttgtgcaag gtcctgcatg gcagttcaaa ggttggccgt
     1621 ggcttttgcc tgatggatca ccagtcgaca tatttgctaa aattaaagcc ttccatctca
     1681 aatatgatga agttcgtctg gatccaaacg ttcagaaatg ggatgtaaca gtattagaac
     1741 tcagctatca caaacgtcat ctggatagac cagttttctt acgattctgg gaaaccctgg
     1801 ataggtacat ggtaaagcac aaatcccact tgagattctg aattacttgt tttcccgctt
     1861 ttctggaaat ctggattaag aagcatggat acaccgtgat ctagagactg ggactcaagc
     1921 tttatgaatt tatcaatgaa gaaggtcgca gatcgatctt ttataaaacc ttatttgatg
     1981 atttatgctt caaagggatg atgcctgtca tataagcaaa ctttttggct tacaactatt
     2041 tttttaatat tagccttcta gtctgtaatg gaaattgtat attttgatag aatttttttc
     2101 tccattggtt aaagtagcat tacttaaaat ttgtttcttt agaaaataaa tacaggttac
     2161 aaaagtgtgt atatgtagag gttataaggc tctctaagcc atcttctgat ttttcattgc
     2221 tctataattc cttttattga gaatactgtg ttatgaatgg tattaatttt agtctctgga
     2281 acttccaaaa ccaagcaaag ggatgtgact attttgaatg aatcaaaatg tcagcctgta
     2341 tgtgtactat atctgtactt tctctattta aaaaggaata atgaaaagtc aagaacaatt
     2401 catcaccttt ggttgaactg ttcggctttt caagacttct ttacttaaaa tgaatacatt
     2461 taatgaatgt acattcttct cactgacttt ggtaatttta aaacttagaa tgatatattt
     2521 ctatctgtga tatctttcca cttgaaaaat ctcaaaacac agattaaaaa ccttataggc
     2581 tatagtactt tttattttgg gagccagagt atgatttggg ggaaagaaat gtattagtcc
     2641 tactgcagtg taactgtctt ttctcataag tccacctttg attctttgta tggtatagga
     2701 ttttgagtct tctgtttcta ggcatgttct tatcttccat tatctttaaa tattgataaa
     2761 ctctcccaga caccaaagaa catatttgct taattaagtg tctgaacaga aacaagataa
     2821 aaacactggt atttttatgt gcgtattcaa tatcgtataa aatataaaac ctatatttta
     2881 acttagtaaa atattttact acttctgtac gttagagtgt tgcatccaag gtaaaacgaa
     2941 tgagcttttt tcttgagtct tgatccacct tttattactt aaaagcagct tttggaacct
     3001 ttactcccct aaagagtttt tgccactaga attgttgctg atcattcatc ttatgtcatt
     3061 tcccgcccca ggaatctctc gtaggttaac atattttatg tatacattta gctctttctt
     3121 atgttaagct gacattacct agcctcattt tgaaatttaa tgctatcgta aaaatgagaa
     3181 gcacttaata tttatttttt aagtaaccaa aaaagtccat gccaataatg aacagaaaaa
     3241 gtatttattc atatggaatt cactaggttc ctgaggaaga aagcagtcag cgttttaaat
     3301 tattagattt taggatattt ataaggtttg aacagactct gccccccacc cctttcttcc
     3361 cttctctgca tcctctcttc ttgaaaagaa aactcaaatt tgttcacatt agaatttctc
     3421 agcatataaa tctgttttca aaataaattg tgttgtataa actttctccg tgatgaaata
     3481 gtcaaggact agaatctgta atattttaat gtaagattac ttgttaagac tactacaagt
     3541 ggacatgaac tacctttcta taaagatttt tagtatttat acttatgtat gaaatttata
     3601 gagtgtggtt aaaattggga acatctactt taaacagggt ttatttttct atcttgaatt
     3661 tgccttacgt gtattcagag gctctggaaa taacattagg aaaagtacaa atatgctgtt
     3721 tcatgtattt gaaaatcaaa cccttagtat gtactttttg tctttttttt tttttttttt
     3781 aaccttcatt cccttaatta ggtccatgta attcatttta tagccattaa ttctaaggaa
     3841 aaaagcttcc agcccatcac tcttcatcct ctcatggctc caggtcctgt agcggcacct
     3901 gtcacagtgc cttgcacaca gtaggcattc agtacatatt tatgtgcacg aatgagtgat
     3961 ggattctcag tgtaactgat ttattacaaa aaagtacttt gactctactt ggtcttggag
     4021 tttaaaaata cagaattgta attgtaattc cctgtaggga atgaagagtc ctatgcagat
     4081 actttaatgg aaaggaagta tgcattagta agtttgactt acccataagt aactggagac
     4141 acccttgtct tgtctcacca gtaaaagaaa gcgccttttc ttcattcgta ggacaccttt
     4201 tctgagtcag gcaacagtaa gaagcttgtg ggtttcagtc agcagctctc aaccctgact
     4261 gtacgttaga atcatttggg ggcctttaaa aaattccgtt gcctgaatcc tgtttctgat
     4321 ttaatttttt tgggatgaga cctgttcatc agtattttta aaaagttgtt cttcaggtat
     4381 ttcatgttga gaaaggatcg aaaatcactg gctcagtttg ttacgaaaac aatgccagta
     4441 ttaaatgttg tgtcgtctcc tccttttttt gttttttgtg ttttttttct tttgtggcca
     4501 ccttttgcac tagaccatcc ccattattgg tggtattggc ctatagttcc acaagacaaa
     4561 ttcaagtctt atttatttaa tatacgaata ttttgctgtt taatatttaa acaatgttta
     4621 atatatttcc ttataaacta gtattatagt ttatggtttg tttcccatgt gtccatatcc
     4681 tttactaact tttttttaac agcagcgtga caacagtcca tacagaaata actaattcat
     4741 aatgaggaaa attcataatt aatttttaag gtagaaggaa ataaagtatt aatttcttat
     4801 ctgccatgca gaattagaca aatagaattt gcttatgaaa ggaaagaggc atacttttta
     4861 attggtctac acagaaaagt aaaagtaaat tattcattta aataagattc attatctaat
     4921 aaacattgaa ggaaatattt ttcctaaata aaaaattttg tgactcctaa taaaattaaa
     4981 gtgatgacat tgttcttttt tggagggtgg ggagggggta tttagttgcc atatttctta
     5041 ctacataaca atttcatttt attggtgtca acagtaggaa cagtgataag atatacatat
     5101 gtggccagga ataaagtgcc actttgccag ataactatta gatgagtctt agttgtcaaa
     5161 ctaattcgtt tataaaattt tttgagacca acagtctata atattacaaa tgcagccatt
     5221 acaaaagctg gtcaaaatta aaggaaacat gaaaaataaa tgtaatcaca tgagccttaa
     5281 tattacgtga ctgaactttt atgattcact tggatttgat attcaactga ttactctaac
     5341 catggtatat taactttaga aataaaaagg ggagaagtga ctgaatttga cataagaatt
     5401 gcattagaaa ttttgaaatg gcatgtccta tatgttctgg ccaactcatt gccacatttg
     5461 gatatatatt gaccccagca tggtttctat attcatatgt tggaataata actaaggaaa
     5521 aattgaaaat gtataataga tgtataaaga attatattta gtaaatgcat aataggtaat
     5581 aacactttca ggttattgat ctgttcggct ttttatgtat taggtagtgt ttatacgagt
     5641 atcttgggag ttataaacgc gtgccattta aatgagtaaa gctaatgaaa taaaaccagt
     5701 tttattgcca aaattcaaaa agtggggtga taccatgtca aattgaagta aatgacctat
     5761 ctctgagaat ttcgtttgcc attgaattcc atttctatcc actttaaatt tactaaaagc
     5821 tacttaacct ccaagtttga ttaaagtgct ttaatatgta atgcggttca tgtacatggc
     5881 gtaggcacta gaagtgattg tctggccacc gattttatta tttctcaagc aaagtggttc
     5941 ttgagtagag tttaaatttg ggcggtgtaa cctgataaag tgttgtactc at
//
LOCUS       XM_032647215            4995 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus beta-1,3-galactosyltransferase 2
            (B3GALT2), mRNA.
ACCESSION   XM_032647215
VERSION     XM_032647215.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4995
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4995
                     /gene="B3GALT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 9
                     Proteins, and 17% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761333"
     CDS             2465..3733
                     /gene="B3GALT2"
                     /codon_start=1
                     /product="beta-1,3-galactosyltransferase 2"
                     /protein_id="XP_032503106.1"
                     /db_xref="GeneID:116761333"
                     /translation="MLQWRRRHCCFAKMSWNAKRSLFRTHLIGVLSLVFLFAMFLFFN
                     HHDWLPGRTGFKENPVTYTFRGFRSTKSETNHSSLRNIWKETVPQTLRPQTATNSNNT
                     DLSPQGVTGLENTLSANGSIYNEKGTGHPNSYHFKYLINEPAKCQEKSPFLILLIAAE
                     PGQIEARRAIRQTWGNESLAPGIQITRIFLLGVSIKLNGYLQRAILEESRQYHDIIQQ
                     EYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLILKLLKPDLPPRHN
                     YFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFKVSLSI
                     RRLHLEDVYVGICLAKLRIDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIK
                     YWNHLQQNKHNACANAAKEKAGRYRHRKLH"
     misc_feature    2687..2926
                     /gene="B3GALT2"
                     /note="Beta-1,3-galactosyltransferase 2 N-terminus;
                     Region: B3GALT2_N; pfam19341"
                     /db_xref="CDD:437173"
     misc_feature    2957..3541
                     /gene="B3GALT2"
                     /note="Galactosyltransferase; Region: Galactosyl_T;
                     pfam01762"
                     /db_xref="CDD:426415"
ORIGIN      
        1 gagtagtgtg ggcttccctg gtggcgtagc agttaaggat ctgcctgcca gtgcagggta
       61 caagggttcg aaccctggtc caggaaaatc ccacatgctg tggagcaact aagcccgtgc
      121 accacaacta ctgagcctgt gctctagagc ccgtgagcca caactactga gcccgcgcac
      181 cacaactact gagtccgcat gccacaacta ctgaagtcca catgcttaga gcccatgctc
      241 cacaacaaga gaagccacca caatgagaag cctgcgcacc gcaatgaaga gtagcccccg
      301 ctcaccacaa ctagacaaag cccgtgcgca gcaacgaagg cccaatgcag ccaaaaaata
      361 atatattaat tttttaaaaa agagagtagt gagcatgtaa tatgggtgga cttagggact
      421 aaatgccaag aaacccaggt tttagttctc tccttcacac ttaaccagaa aaagtcaaag
      481 ctctaggcct tacatttccc atttataaaa ctcttactgt tccttctaac atttctagga
      541 aaatcacata cactccttta aaaaagtctt aggattccta aaactacaaa acacatttca
      601 tcagctatac taaaaaacat aatgaggaca aaaaatattt taatattaga gaaaatgtaa
      661 atctatattt gaaataacac acattactgg ggaagatagg tgggatgaaa aatatacgac
      721 tacaaatata cagtgtaagt ttcaaaatgg taaatttcta tgagttaagg tccctaaaga
      781 ctcagaggaa aaactggtaa ttcaggttat ttttaaaaaa aaaaaaaaag gacaatgccc
      841 cagtacttgc agaaaaaaaa gcagcaaggt gcccaacaga ctaatcatac aaaatattta
      901 agagtgaata tctagtgttt actgaaaaat ttgcctgatg gcaagttact aaaccatcct
      961 gaaatattag gacaaataaa tatgattagt aaagcctcat tacccaccaa gaagatcctg
     1021 tacaagtgtg ctttatccat tacatcattt tgttgaattc cgccatacat gtaattttaa
     1081 agaaaaagaa aaaaaaaata aatgctgaca ttaaaaagtg attaaaaata aagttttgct
     1141 gccttcaaga acactagaaa ccgcgcaaga gtgaaaaaga agtgggctat cacaacacgt
     1201 gtcagtaaag caatccacag cagctgattt acataaatcc tagaaaatgg tggggggagg
     1261 caggggggaa gatgtctaca ttactgaata aaaatggtct acgagccgca actagatatt
     1321 agtaaaacga aaatcagaac aatttgagaa aaagaacttc aagggaagga gtgcactgaa
     1381 ggagttaaat tacactaagt tacatatcaa agcttatatt gcttatgccc tataaaatca
     1441 tgtaacatga aaaccaacat ctaacactga aaacatttag aaagcccgtg cttgagcata
     1501 aattaaaaaa aaaaaggaaa taagctggaa aaagataaaa ttataaccat tcatttcata
     1561 atcatcccat tttcgtatta ttcactcatc actacactta cactgaatat atataattta
     1621 gcacatggaa gcaaatctct aagcttctct ctaccttagg tttttagtca aaatgaatgc
     1681 aaacaatcac gtgggattca gccaagcagt gacgttaaat tctgctctgt cagagagagc
     1741 atctgtcaag cccacattta aactgctgcc tgcctgtgca gcagctgagg aaccctggat
     1801 ttcatattac agactaaaac cctggtaaaa ctgctcaaaa tccttcctgc agctgccagg
     1861 caacaacgaa agagagttaa atcctgttct tttccaatac aatcgaagca ctccattcta
     1921 gctctggctg cttttgattg cagctcagtg ttcttactag aaatatggat actgagaaga
     1981 gaatacagca ctgcattgtc cggccaggaa aacagcagat gtaaaaagcc tcaatgcatc
     2041 aactgtcagc aagagtcgac agtgctccaa acagaacgaa caaccacagc tcttttgttt
     2101 aaagaaagag aaagaaaatg aaagaaagga aaaacctcag aagactagga cccatatgaa
     2161 caagaagggg aactcgaaga caagcagaca gatggacact ctggacactg tgaaaagcaa
     2221 tcgcaggagg cagactgctg ggggaggtgc gcatgttcga tagcatcttg gctgaagtga
     2281 tggcgtgcca aaagtatctt cagtgagcat aatcctcgcc tcataaatgc ctgaccaagg
     2341 aagaatgact gcgagggaga caacgtgacc gcattagaaa atgattacca aagaacagta
     2401 ctgattcagg agaagaacac attctcagcc accgatctct catccactac tggatattta
     2461 caacatgctt cagtggagaa gaagacactg ctgctttgca aagatgagct ggaatgccaa
     2521 gaggtctctg ttccgtaccc atcttattgg tgtactttct ctcgtgtttc tttttgctat
     2581 gtttttgttt ttcaatcatc atgactggct gccaggcaga actggattca aagaaaaccc
     2641 tgtgacatac actttccgtg gatttcgttc tacaaaaagt gagacaaacc acagctctct
     2701 tcggaacatt tggaaagaaa cagtcccgca gactctgagg cctcaaacag caactaactc
     2761 caataacaca gatctgtcac cacaaggagt tacagggctg gagaatacac tcagtgccaa
     2821 cggaagtatt tacaatgaaa aaggcactgg acatccaaat tcttaccatt tcaaatacct
     2881 tatcaatgaa cctgcaaaat gccaggagaa aagccctttt ttaatactac taatagctgc
     2941 agaacctgga cagatagaag ctagaagagc tattcggcaa acttggggca atgaaagtct
     3001 agcacctggt atccaaatca cacgaatttt tttgttgggt gtaagtatta agttaaatgg
     3061 ctaccttcaa cgtgcaatcc tggaagaaag cagacaatac catgacataa ttcaacagga
     3121 atatttagat acatactata atctgaccat taaaacacta atgggcatga actgggttgc
     3181 cacatactgt ccacatattc catatgttat gaaaactgac agtgacatgt ttgtcaacac
     3241 cgaatattta atacttaagt tactgaagcc agacctgcct cctagacata actattttac
     3301 tggttaccta atgaggggat acgcacccaa ccgaaacaaa gacagcaagt ggtacatgcc
     3361 accagacctc tacccaagtg agcgctatcc tgtcttctgt tccgggactg gttatgtttt
     3421 ttctggagat ctggcagaga agatatttaa agtttcttta agcatccgtc gtttgcactt
     3481 ggaagatgta tatgtaggga tctgtcttgc caagttgaga attgatcctg tcccccctcc
     3541 caatgagttt gtgttcaatc actggcgagt ttcttattca agctgtaaat acagtcacct
     3601 aattacctct catcagttcc agcctagtga actgataaaa tactggaacc atttacaaca
     3661 aaataagcac aacgcttgtg ccaacgcagc aaaagaaaag gcaggcaggt atcgccaccg
     3721 caaactccac tagaaaagac aactttcttt tgttttccca aacgtgcgat ctgtaaaata
     3781 ttgctaaaag catgtatagt taaaactgat tacatccata ggacaagttt tagttaaaac
     3841 tcatcgcata aaggaatcca aaaatatttt tttaatttct gaagaaggta attcttaaaa
     3901 atacaacacg atataacaaa aaggtatccc aaacaatcta ctaaaaatcc acataagggg
     3961 attctgtgta ttaacatgca ataacaggca cgcatacatc aatgattcaa ctcttacgtt
     4021 aggggccaag aaggtgtatt tgcatatgtt ttccacacaa attttaattt aagaaatgga
     4081 tacagtcaaa agactttgga ttcagttttt catttcaata tataattaaa tgtaaataaa
     4141 acattattgt caattttaag gaaactttat aattgtgcaa aagacaaatt ttgacctatt
     4201 ctagggttct aaaaaccata ttccatgcaa taagatttag ttgaattatt ccataaacat
     4261 gtttataaag ttcagatgct tcatcaatgc agttctcatc taagtattta ctttttaaaa
     4321 acaattgaga tattcatttt cttttatcaa tacgcacata tactggggga atttattttg
     4381 acatgacgtg ataaaatgtg aaaaaaaaaa tcaatgtgtc tcaggctcac atttttataa
     4441 aaaaaaaatt aaatgtttca aaatagaaca tctgttccct cgttggtgtt cagggccaag
     4501 ctagaacttc aatgatttac tcaatcaacc aggtactgca ctctcaagga gcatcaccag
     4561 ttaacttcaa gcatatctga aaaaatctat cattttcctc taactgaagc aaaagtgatt
     4621 acttacaggc acaaagagga tgcactgttg aaaaaagata aaggataaag agtgcagcgg
     4681 cagtttcatt caatacattt taagatgcat gtctgccaaa ctgcaacata tgggaagttt
     4741 atttcctgac agcaggtgta cacatgccag tacttaatca ttttacggca cctacttctt
     4801 tctctgagtg ccaagtttac aaacctgcag tttttaattt ggtggatgac aaatattctg
     4861 caccactgat taaaaacttt cttgggaggg atgggggaaa actacaaatg tttgatgaac
     4921 acttgattct aggatgaaca atgtatacaa tgcactttta tcaagttttt aataaaaaag
     4981 gtaaacaaaa aacct
//
LOCUS       XM_032647228            1511 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selectin E (SELE), transcript variant X1,
            mRNA.
ACCESSION   XM_032647228
VERSION     XM_032647228.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1511
                     /gene="SELE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 26%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761340"
     CDS             42..1505
                     /gene="SELE"
                     /codon_start=1
                     /product="E-selectin isoform X1"
                     /protein_id="XP_032503119.1"
                     /db_xref="GeneID:116761340"
                     /translation="MMASQFLSALTFVLLLFKESGAWSYNASTEPMTFDEASAYCQQR
                     YTHLVAIQNQEEIKHLNSAFSYSPSYYWIGIRKVNDTWTWIGTQKPLTEEATNWAPGE
                     PNNKQSKEDCVEIYIKREKDSGKWNDERCSKKKLALCYTAACTPTSCSGHGDCRETIN
                     SYTCQCHPGFKGLKCEQVAKCDALSNPVNGVVKCFQSHGSFLWNTTCEFECNEGYELT
                     GPQHLQCISSGIWDHKQPTCKAVTCDAVSHPQNGTVSCSHSPAGEFTCKSSCHFTCAE
                     GFVLQGPAQVECTTQGQWTQQVPVCEAVKCDAIPQPRSGSVNCTHSPTGEFTYKSSCA
                     VSCEEGFELRGSAQLECTSQGQWTQEVPSCQVVQCSSLEVPGKIDINCSGEPVFGTKC
                     TFACPEGWTLNGSAALTCGATGHWSGMLPTCEAPSKSQTPLAVGLSAAGVSLMTLASF
                     LLWLLKRLQKKAKKFVPASSCQSLQSDGSYQTISELI"
     misc_feature    108..464
                     /gene="SELE"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the type 1 transmembrane proteins: P(platlet)-,
                     E(endothelial)-, and L(leukocyte)- selectins (sels);
                     Region: CLECT_selectins_like; cd03592"
                     /db_xref="CDD:153062"
     misc_feature    order(249..251,345..347,351..356,381..383,387..389,
                     420..428)
                     /gene="SELE"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153062"
     misc_feature    order(249..251,345..347,351..353,369..371,381..383,
                     387..389,420..428)
                     /gene="SELE"
                     /note="PSGL-1 peptide binding surface; other site"
                     /db_xref="CDD:153062"
     misc_feature    <486..569
                     /gene="SELE"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    657..1310
                     /gene="SELE"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 atatcaagtc taatcttggg atcaaaagaa gtcttgaagt catgatggct tcacagtttc
       61 tctctgctct cactttcgtg cttctcctgt ttaaagaaag tggagcctgg tcttacaacg
      121 cctccacgga acccatgacg tttgatgagg ccagtgctta ttgccagcaa aggtacacac
      181 atctggttgc aattcaaaac caggaagaga ttaaacacct gaactccgca ttcagctatt
      241 caccaagtta ttactggatc ggaatcagaa aggtcaacga tacatggacc tggataggga
      301 cccagaagcc tttgactgaa gaggccacaa actgggctcc aggtgaacca aacaataagc
      361 aaagcaagga ggattgtgta gagatctaca tcaagagaga aaaggactcg ggcaagtgga
      421 atgatgagag atgcagcaaa aagaagctag ccttgtgcta cacagctgcc tgtaccccga
      481 catcctgcag cggccacggt gactgtagag agaccatcaa cagctacact tgtcagtgcc
      541 accccggctt caagggactc aagtgtgagc aagtggctaa gtgtgatgct ttgtcaaatc
      601 ctgtcaatgg agttgtgaaa tgtttccaaa gccacggaag cttcctgtgg aacaccacct
      661 gtgaatttga gtgtaatgaa ggatatgaac tcactgggcc ccagcacctg cagtgtatct
      721 cctctgggat ttgggaccac aagcaaccaa catgtaaagc tgtgacgtgt gatgccgtca
      781 gccatcctca gaatggcaca gtgagctgta gccactcccc tgctggagag ttcacctgta
      841 agtcatcctg ccacttcacc tgtgcagaag gcttcgtgtt gcaagggcca gcccaggttg
      901 aatgcactac ccaggggcaa tggacacagc aggtcccagt ttgtgaagct gtgaaatgtg
      961 atgctatccc tcagcccaga agtggttcag tgaactgtac ccattccccc actggagagt
     1021 ttacctacaa gtcctcctgt gccgtcagct gtgaggaagg ctttgaattg cgtggatcgg
     1081 ctcaacttga gtgcacatct cagggacagt ggacacagga ggtcccctcc tgccaagtgg
     1141 tacaatgttc aagtttggag gttcccggaa agatcgacat aaactgcagt ggggagcctg
     1201 tgtttggcac caagtgtaca tttgcatgcc ctgaaggatg gacgctcaat ggctctgcgg
     1261 ctctgacatg tggtgccaca ggacactggt ctgggatgct gcctacctgt gaagctcctt
     1321 ctaagtccca aactcccttg gcagttggac tttctgctgc tggggtctcc ctcatgacat
     1381 tagcatcatt tctcctctgg cttctgaaac gccttcagaa gaaagcaaaa aaatttgttc
     1441 ctgccagcag ctgccaaagc cttcaatcag atggatccta ccaaacgatt tccgagttaa
     1501 tttaagtcca a
//
LOCUS       XM_032647237            1493 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selectin E (SELE), transcript variant X2,
            mRNA.
ACCESSION   XM_032647237
VERSION     XM_032647237.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1493
                     /gene="SELE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 Proteins, and 27%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761340"
     CDS             33..1493
                     /gene="SELE"
                     /codon_start=1
                     /product="E-selectin isoform X2"
                     /protein_id="XP_032503128.1"
                     /db_xref="GeneID:116761340"
                     /translation="MMASQFLSALTFVLLLFKESGAWSYNASTEPMTFDEASAYCQQR
                     YTHLVAIQNQEEIKHLNSAFSYSPSYYWIGIRKVNDTWTWIGTQKPLTEEATNWAPGE
                     PNNKQSKEDCVEIYIKREKDSGKWNDERCSKKKLALCYTAACTPTSCSGHGDCRETIN
                     SYTCQCHPGFKGLKCEQVVTCQAQEAPEHGSLVCNDPLGKFSYNSSCSVSCGEGYLPS
                     SPEATQCTSSGEWSVPLPACNVAKCDALSNPVNGVVKCFQSHGSFLWNTTCEFECNEG
                     YELTGPQHLQCISSGIWDHKQPTCKAVTCDAVSHPQNGTVSCSHSPAGEFTCKSSCHF
                     TCAEGFVLQGPAQVECTTQGQWTQQVPVCEVVQCSSLEVPGKIDINCSGEPVFGTKCT
                     FACPEGWTLNGSAALTCGATGHWSGMLPTCEAPSKSQTPLAVGLSAAGVSLMTLASFL
                     LWLLKRLQKKAKKFVPASSCQSLQSDGSYQTISELI"
     misc_feature    99..455
                     /gene="SELE"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the type 1 transmembrane proteins: P(platlet)-,
                     E(endothelial)-, and L(leukocyte)- selectins (sels);
                     Region: CLECT_selectins_like; cd03592"
                     /db_xref="CDD:153062"
     misc_feature    order(240..242,336..338,342..347,372..374,378..380,
                     411..419)
                     /gene="SELE"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153062"
     misc_feature    order(240..242,336..338,342..344,360..362,372..374,
                     378..380,411..419)
                     /gene="SELE"
                     /note="PSGL-1 peptide binding surface; other site"
                     /db_xref="CDD:153062"
     misc_feature    <477..560
                     /gene="SELE"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    573..746
                     /gene="SELE"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(603..605,666..668)
                     /gene="SELE"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    <690..1298
                     /gene="SELE"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    759..935
                     /gene="SELE"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(789..791,852..854)
                     /gene="SELE"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
ORIGIN      
        1 ctaatcttgg gatcaaaaga agtcttgaag tcatgatggc ttcacagttt ctctctgctc
       61 tcactttcgt gcttctcctg tttaaagaaa gtggagcctg gtcttacaac gcctccacgg
      121 aacccatgac gtttgatgag gccagtgctt attgccagca aaggtacaca catctggttg
      181 caattcaaaa ccaggaagag attaaacacc tgaactccgc attcagctat tcaccaagtt
      241 attactggat cggaatcaga aaggtcaacg atacatggac ctggataggg acccagaagc
      301 ctttgactga agaggccaca aactgggctc caggtgaacc aaacaataag caaagcaagg
      361 aggattgtgt agagatctac atcaagagag aaaaggactc gggcaagtgg aatgatgaga
      421 gatgcagcaa aaagaagcta gccttgtgct acacagctgc ctgtaccccg acatcctgca
      481 gcggccacgg tgactgtaga gagaccatca acagctacac ttgtcagtgc caccccggct
      541 tcaagggact caagtgtgag caagttgtga cctgtcaggc acaggaagcc cctgagcatg
      601 gaagcctggt ttgcaacgac cctttgggga aattcagcta caattcttcc tgctctgtca
      661 gctgtgggga gggctatctc ccaagcagcc cggaggccac acagtgcact tcctccggag
      721 aatggagtgt tcctcttcca gcctgcaatg tggctaagtg tgatgctttg tcaaatcctg
      781 tcaatggagt tgtgaaatgt ttccaaagcc acggaagctt cctgtggaac accacctgtg
      841 aatttgagtg taatgaagga tatgaactca ctgggcccca gcacctgcag tgtatctcct
      901 ctgggatttg ggaccacaag caaccaacat gtaaagctgt gacgtgtgat gccgtcagcc
      961 atcctcagaa tggcacagtg agctgtagcc actcccctgc tggagagttc acctgtaagt
     1021 catcctgcca cttcacctgt gcagaaggct tcgtgttgca agggccagcc caggttgaat
     1081 gcactaccca ggggcaatgg acacagcagg tcccagtttg tgaagtggta caatgttcaa
     1141 gtttggaggt tcccggaaag atcgacataa actgcagtgg ggagcctgtg tttggcacca
     1201 agtgtacatt tgcatgccct gaaggatgga cgctcaatgg ctctgcggct ctgacatgtg
     1261 gtgccacagg acactggtct gggatgctgc ctacctgtga agctccttct aagtcccaaa
     1321 ctcccttggc agttggactt tctgctgctg gggtctccct catgacatta gcatcatttc
     1381 tcctctggct tctgaaacgc cttcagaaga aagcaaaaaa atttgttcct gccagcagct
     1441 gccaaagcct tcaatcagat ggatcctacc aaacgatttc cgagttaatt taa
//
LOCUS       XM_032647245            7463 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus agrin (AGRN), transcript variant X1,
            mRNA.
ACCESSION   XM_032647245
VERSION     XM_032647245.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7463
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7463
                     /gene="AGRN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 10 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116761348"
     CDS             81..6185
                     /gene="AGRN"
                     /codon_start=1
                     /product="agrin isoform X1"
                     /protein_id="XP_032503136.1"
                     /db_xref="GeneID:116761348"
                     /translation="MARLRPSCQAPLQPLLLLLVVAARALPGADGTCPERALERREEE
                     ANVVLTGTVEEILNVDPVQHTYSCKVRVWRYLKGKDVVAQESLLDGGNKVVIGGFGDP
                     LICDNQVSTGDTRIFFVNPAPPYLWPAHKNELMLNSSLMRITLRNLEEVEHCVEDKPG
                     THFTPVPPTPPDACRGMLCGFGAVCEPSAEEPGRASCVCKKSVCPSVVAPVCGSDAST
                     YSNECELQRAQCSQQRRIRLLRRGPCGTRDPCSNVTCSFGSTCARSADGLTATCLCPA
                     TCLGAPEGPVCGSDGTDYPSECQLLRQACAHQENVFKKFDGPCDPCQGALNDLSLICR
                     VDPRTRRPEMLLRPESCPPRQAPVCGDDGVTYGNDCVMGRTGATRGLLLQKVRSGQCQ
                     PRDQCPEACKFSAVCLSRRGRPRCSCDRVICDGAYKPVCAHDGRTYDNDCRRQQAECQ
                     QQRSIPAKRQGPCDQPPSPCRGVQCPFGAMCAVKNGEAECACQRACSGIYDPVCGSDG
                     VTYGSTCELEATACAFGREIRVARRGPCDRCGQCRFGALCEAETGRCVCPSECVASAQ
                     PVCGSDGRTYASECELHVHACTRQIGLHVASAGPCETCGDTVCAFGAVCSAGRCVCPR
                     CERPPPGPVCGSDGVTYRSSCELREAACQQQMQIEEARVGPCEQAECGSGGSGSGEHG
                     ECGQELCQQRGGIWDEDSEDGPCVCDFSCQSTLRSPVCGSDGVTYHTECELKKARCES
                     RPELYVVAQGACSAPTLAPLLPAVPLHCAQSPYGCCLDNITAARGVGLAGCPSSCQCN
                     PHGSYGGTCDPATGQCSCRPGVGGLKCDRCEPGFWNFRGIVTDGRSGCTPCSCDPQGA
                     VRDDCEQMTGLCSCKPGVAGPRCGQCPDGRALGPAGCETDSPAPKTCAEMPCEFGASC
                     VEEAGSAHCVCPTPACPGANATKVCGSDGVTYGDECQLRTIACRQGLDISIQSLGPCQ
                     EDITSGPRPTSASVAPSGLDLSKALLPPPSALSLAPSSTARPASQPWTTASVPRTAAR
                     PVLTMPPTAASPAASLVTSAFGSADGSGDEELSGDLEASAAGSGGLEPPERDSAGTPG
                     PPMERASCYNSPMGCCSDGKTPSLDAEGSNCPATKVFQGVLELEGVEGQELFYTPEMA
                     DPKSELFGETARSIESALDDLFRNSDLKKDFRSVRLRDLGPGNSVRAIVDVHFDPTTA
                     FRAPDVCQALVRQIQASRRRSLGVRRPLQEHVRFMDFDWFPAFFTGATPAAATARATT
                     VARLPPSAVTPRALYPSHTSRPVSRITVPFTARQPPTPAPSRVPAHRPSPPGIQQPPR
                     PCDSQPCLHGGTCQDQGSGEDFTCRCTAGRGGAVCEQAPRPSVPAFGGHSFLAFPTLR
                     AYHTLRLALEFRALEPQGLLLYNGNVRGKDFLALALLGGRVQLRFDTGSGPAVLTSSV
                     PVQPGRWHHLELSRHWRQGTLSVDGETPVLGQSPSGTDGLNLDMDLFVGGVPEDQASV
                     VLERTSVGVGLRGCIRLLDVNNQQLELSDWQGSATRSSGVGECGDHPCVPNPCLGGAP
                     CQALEAGMFHCRCLPGRFGPTCADEKDPCQPNPCHGAAPCRVLPQGEAKCECPQGREG
                     SLCQTVSEHENSQPFLADFSSFSYLELKGLHTFERDLGEKMALEVVFLARGPSGLLLY
                     NGQKTDGKGDFVSLALHDRVLEFRYDLGKGAAVIRSKEPVALGAWTRVSLERNGRKGA
                     MRVDDGPRVLGESPVPHTVLNLKEPLYVGGAPDFSKLARAAAVSSGLDGAIQLVSLNG
                     RQLLAREHVVRAVGVSSFTDHPCTQAEGHPCLNGASCLPREASYECLCPGGFSGLHCE
                     KGLIEKSAGDLDTLAFDGRTYIEYLNAVAESEKALQSNYFELSLRTEATQGLVLWSGK
                     ATERADYIALAIVDGRLQLAYDLGSQPTVLRSTVPVSTNRWLRVRAHREQREGSLQVG
                     NEAPVTGSSPLGATQLDTDGALWLGGLEKLPVGQALPKAYGTGFVGCLRDVVVGRRPL
                     NLLEDAVTKPDLRPCPAP"
     misc_feature    177..524
                     /gene="AGRN"
                     /note="Agrin NtA domain; Region: NtA; pfam03146"
                     /db_xref="CDD:460825"
     misc_feature    690..812
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors and
                     follistatin-like domains. Kazal inhibitors inhibit serine
                     proteases, such as, trypsin, chyomotrypsin, avian
                     ovomucoids, and elastases. The inhibitory domain has one
                     reactive site peptide bond, which serves the...; Region:
                     KAZAL_FS; cd00104"
                     /db_xref="CDD:238052"
     misc_feature    900..1037
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1122..1253
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1332..1469
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1554..1688
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1746..1883
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1920..2078
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    2196..2336
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    2463..2591
                     /gene="AGRN"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(2463..2465,2469..2471,2499..2501,2520..2522,
                     2526..2528,2553..2555)
                     /gene="AGRN"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    2625..>2735
                     /gene="AGRN"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(2625..2627,2631..2633,2661..2663,2682..2684,
                     2688..2690,2715..2717)
                     /gene="AGRN"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    2850..2993
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    <3018..3422
                     /gene="AGRN"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    <3018..>3191
                     /gene="AGRN"
                     /note="CARMIL C-terminus; Region: CARMIL_C; pfam16000"
                     /db_xref="CDD:464966"
     misc_feature    3441..3815
                     /gene="AGRN"
                     /note="Domain found in sea urchin sperm protein,
                     enterokinase, agrin; Region: SEA; smart00200"
                     /db_xref="CDD:214554"
     misc_feature    4044..4136
                     /gene="AGRN"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    4245..4640
                     /gene="AGRN"
                     /note="Laminin G domain; Region: Laminin_G_1; pfam00054"
                     /db_xref="CDD:395008"
     misc_feature    5049..5444
                     /gene="AGRN"
                     /note="Laminin G domain; Region: Laminin_G_1; pfam00054"
                     /db_xref="CDD:395008"
     misc_feature    5508..5606
                     /gene="AGRN"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5739..6131
                     /gene="AGRN"
                     /note="Laminin G domain; Region: Laminin_G_1; pfam00054"
                     /db_xref="CDD:395008"
ORIGIN      
        1 cgtcttgtcc agtccagtcc ctggcgcggc ccggcccgtg agcttgctcc ggccgccttc
       61 cgccgtcctc cgcccgcgcc atggccagac tgcggccgtc ctgccaggct cctctgcagc
      121 cactgctgct gctcctggtg gtggccgcgc gcgccctgcc cggcgccgac gggacgtgcc
      181 ccgaacgcgc gctggagagg cgggaggagg aggcgaacgt ggtgctcacc ggcaccgtgg
      241 aggagatcct caacgtggac ccggtgcagc acacgtactc gtgcaaggtt cgggtctggc
      301 ggtacttgaa gggcaaagat gtggtggccc aggagagcct gctggacgga ggcaacaagg
      361 tggtgattgg cggcttcgga gaccccctca tctgtgacaa ccaggtgtcc actggggaca
      421 ccaggatctt ctttgtgaac ccggccccgc cgtacctgtg gccggcccac aagaatgagc
      481 tgatgctcaa ctccagcctc atgcgcatca ccctgcggaa cctggaggag gtggaacact
      541 gcgtggaaga caaacctggg acccacttca cgccagtgcc cccaacgcct ccggatgcgt
      601 gccgaggaat gctgtgtggc ttcggcgccg tctgcgagcc cagcgcggag gagccgggcc
      661 gagcctcctg cgtgtgcaag aagagcgtct gccccagcgt ggtggcgccc gtgtgcggct
      721 cggacgcctc cacctacagc aacgagtgcg agctgcagcg ggcgcagtgc agccagcaga
      781 ggcgcatccg cctgctgcgc cgggggccct gcgggaccag ggacccctgc tccaatgtaa
      841 cctgcagctt tggcagcacc tgtgcgcgct ccgcagatgg actgacagcc acgtgcctgt
      901 gccctgccac gtgcctgggg gcccccgagg gccctgtgtg tggcagcgac ggcactgact
      961 accccagcga gtgccagctc ttgcgccaag cctgcgccca ccaggaaaac gtgttcaaga
     1021 agttcgacgg cccttgcgac ccctgccagg gcgccctcaa cgacctgagc ctcatctgcc
     1081 gtgtggaccc acgcacgcgg cgccccgaga tgctcctgcg gccagagagc tgccctccga
     1141 ggcaggcgcc cgtgtgtggg gatgatgggg ttacctatgg taacgactgc gtcatgggcc
     1201 gaaccggggc cacccgaggc ctcctcctcc agaaagtgcg ctctggccag tgccagcctc
     1261 gagaccagtg cccagaggcg tgcaagttca gtgccgtgtg cctgtcccgc cgaggccgcc
     1321 cccgctgttc ctgcgaccgt gtcatctgtg atggggccta caaacccgtg tgcgcccacg
     1381 acgggcgcac gtatgacaat gactgccggc gccagcaggc cgagtgtcag cagcagcgca
     1441 gcatccccgc caaacgccag ggcccgtgtg accagccccc gtccccgtgc cgcggggtgc
     1501 agtgtccatt cggggcgatg tgtgctgtga agaatgggga agccgagtgt gcgtgtcagc
     1561 gagcgtgttc aggcatctac gatcccgtgt gtggcagcga cggcgtcacg tacggcagca
     1621 cgtgcgagct ggaggctacg gcctgcgcct ttgggcggga gatccgggtg gctcgccgag
     1681 gaccctgtga ccgctgtggg cagtgccgct ttggagccct gtgcgaggct gagaccgggc
     1741 gctgcgtatg cccctccgag tgcgtggcct cggcccagcc cgtgtgtggc tctgacgggc
     1801 gcacatatgc cagcgagtgt gagctgcacg tgcacgcctg cacacgccag atcggcctgc
     1861 acgtggcctc ggctggaccc tgcgagacct gcggagacac agtgtgcgcc ttcggggccg
     1921 tgtgctcggc ggggcggtgc gtgtgtcccc ggtgcgagcg ccctccgccc ggccccgtgt
     1981 gtggcagcga cggcgtgacc taccgcagtt cctgcgagct ccgcgaggcg gcctgccagc
     2041 agcagatgca gatagaggag gcccgggtgg ggccgtgtga gcaggccgag tgcggctcgg
     2101 gaggctcggg ctctggagag cacggtgagt gtggacagga gctgtgccag cagcgaggcg
     2161 gcatctggga cgaggactca gaggacgggc cgtgcgtctg cgacttcagc tgccagagca
     2221 ccctgaggag cccggtgtgc ggctcggacg gggtcaccta ccacaccgag tgtgagctga
     2281 agaaggccag gtgtgaatcg cggccagagc tgtacgtcgt ggcccaggga gcctgcagtg
     2341 cccccacctt ggccccgctg ctgcctgcgg ttcccctgca ctgcgctcag agcccctacg
     2401 gctgctgcct ggacaacatc actgctgccc ggggtgtggg cctggccggc tgccccagct
     2461 cgtgccagtg caacccccac ggctcctacg gtggcacctg tgacccggcc acaggccagt
     2521 gctcctgccg tccgggcgtg gggggcctca agtgtgaccg ctgcgagccc ggcttctgga
     2581 actttcgtgg cattgtcacc gatggccgga gtggctgtac cccctgcagc tgtgaccccc
     2641 agggggccgt gcgggacgac tgtgaacaga tgaccgggct gtgctcctgt aagcccgggg
     2701 tggccggacc caggtgcggg cagtgtccag acggccgtgc cctgggccct gctggctgtg
     2761 agacagactc cccggcaccc aagacctgtg ctgagatgcc ttgtgagttc ggggcgtcct
     2821 gcgtggagga ggctggctcc gcccactgtg tgtgcccaac acccgcctgt ccaggggcca
     2881 atgctaccaa ggtctgtggg tcagatggag tcacctatgg cgacgagtgc cagctgagga
     2941 ccattgcctg ccgccagggc ttggacatct ctatccagag cctcggccct tgccaggaag
     3001 acatcacttc cggcccccgt ccgacatctg cctctgtggc cccctcaggg cttgacctga
     3061 gcaaggcgct gctgcctcca cccagcgccc tctccctggc tcccagcagt accgctcgac
     3121 ccgcatcgca accttggacc actgccagcg tccccaggac cgctgcaagg cctgtgctga
     3181 ccatgcctcc cacggccgcc tccccggcag ccagcctcgt cacatctgcc tttggcagcg
     3241 ccgatgggag cggcgacgag gagctgagtg gtgacttgga ggccagtgcg gctggctcag
     3301 gaggactcga gccccctgag agagacagcg ctgggacccc cgggccaccc atggagaggg
     3361 cttcctgcta caactcgcct atgggctgct gctcagatgg caagacgccc tcactggacg
     3421 cagagggctc caactgtcct gccaccaagg tgttccaggg tgtgctggag ctcgaggggg
     3481 tcgaggggca ggagctgttc tacacgccgg agatggccga ccccaagtcc gagctgtttg
     3541 gggagacggc caggagcatc gagagcgcgc tggatgacct cttccggaac tcggacctta
     3601 agaaggactt tcgaagtgtc cgcctgcggg acttggggcc cggcaactcc gtccgagcca
     3661 tcgtggatgt gcacttcgac cccaccacag ccttcagggc acccgatgtg tgccaggccc
     3721 tggtccggca gatccaggca tccaggcgcc ggtccctggg cgtgaggcgg cctctgcagg
     3781 aacacgtgcg gttcatggac ttcgactggt ttcctgcgtt cttcacggga gccacccctg
     3841 ctgcagccac ggccagagcc accactgtgg cccgcctgcc accttcagct gtgacccctc
     3901 gggccctcta tcccagtcac accagccggc ccgtcagcag gatcacagtg cccttcaccg
     3961 cgcgccagcc ccccacccct gcccctagcc gtgtgcctgc acaccggccc tcgcccccgg
     4021 gcatccagca gcccccaagg ccctgtgact cccagccctg cctccacggg gggacctgcc
     4081 aggaccaggg ctcaggtgaa gacttcacct gccgctgcac agcgggcagg gggggcgctg
     4141 tctgcgagca ggcaccgcgc ccctccgtgc cggccttcgg gggccactcc ttcctggcct
     4201 tccccaccct ccgtgcctac cacaccctgc gcctggcgct tgaattccgg gcactggagc
     4261 cccagggtct gctgctgtat aacggcaatg tccggggcaa ggacttcctg gcactggcgc
     4321 tgctgggggg ccgcgtgcag ctcaggttcg acacaggttc ggggcccgcg gtgctcacca
     4381 gctcagtgcc cgtgcagccc ggccggtggc atcacctgga gctgtctcgg cactggcgcc
     4441 agggcactct ctcggtggat ggtgagaccc ctgtcctggg ccagagcccc agtggcactg
     4501 acggcctcaa cctggacatg gacctttttg tgggtggcgt cccggaggac caggcttccg
     4561 tggtgctcga gcggacctct gtcggcgttg ggctgagggg ctgcatccgc ttgctggacg
     4621 tcaacaacca gcagctggag ctgagtgact ggcaggggtc tgcgacccga agctctggag
     4681 tgggcgagtg cggggaccac ccctgtgtgc ctaacccctg cctcggcggg gccccgtgcc
     4741 aggccctgga ggccggcatg ttccactgtc ggtgcctacc cggccgcttt ggcccgacct
     4801 gtgctgacga gaaggaccct tgtcagccga acccctgcca tggggcagcc ccctgccgcg
     4861 tgctgcccca gggcgaggcc aagtgcgagt gccctcaggg ccgggagggc agcctctgcc
     4921 agacagtctc agagcacgag aatagccagc ctttcctggc cgacttcagc agcttctcct
     4981 acctggagct gaaaggcctg cacacctttg agcgggacct gggggagaag atggcactgg
     5041 aggtggtgtt cctggcccgg gggcccagcg gcctgctcct ctacaacggg cagaagacag
     5101 acggcaaggg cgacttcgtg tcgctggcac tgcacgaccg tgtcctggag ttccgctacg
     5161 acttgggcaa gggggcagcg gtcatcagga gcaaggagcc ggtggccctg ggcgcctgga
     5221 ccagggtctc cctggagcga aacggacgca aaggagccat gcgggtcgac gatgggcccc
     5281 gtgtgctggg ggagtccccg gtgccgcaca ccgtcctcaa cctgaaggag ccgctctacg
     5341 tagggggggc ccctgacttc agcaagctgg cccgggcagc cgccgtgtcc tctggcttgg
     5401 atggtgccat ccagctggtc tcgctgaacg gccgccagct gctggcccgg gagcacgtgg
     5461 tgcgggcggt gggtgtctcg tccttcacag accacccttg tacccaggcc gagggtcacc
     5521 cttgcctcaa cggggcctcc tgtctccctc gggaggcctc ctacgagtgc ctgtgtcctg
     5581 ggggcttctc agggctgcac tgcgagaagg gcctgattga gaagtcggcc ggggacttgg
     5641 acacgctggc ctttgacgga cggacctaca tcgagtacct caacgccgtg gcggagagtg
     5701 agaaggcact acagagcaac tactttgagc tgagcctgcg taccgaggcc acgcaggggc
     5761 tggtgctgtg gagtggcaaa gccacagagc gggccgacta catcgcactg gccatcgtgg
     5821 acgggcgcct gcagctggct tacgacctgg gctcccagcc cacggtgctg cgctccaccg
     5881 taccagtcag caccaaccgc tggttgcggg ttagggcaca cagggaacag agggaaggct
     5941 cccttcaggt gggcaatgag gcccctgtga ctggttcctc cccactgggt gccacgcagc
     6001 tggacacaga tggagccctg tggttgggtg gcctagagaa gctgcctgtg ggccaggccc
     6061 tgcccaaggc ctacggcacg ggcttcgtgg gctgcctgcg ggacgtggtg gtgggtcggc
     6121 gcccgctgaa cctgctggag gatgccgtca ccaagccgga ccttcggccc tgtcctgccc
     6181 cgtgagccac aatgcagcca cgacccaccc tgctgtaatt attttctatt tttgtaaact
     6241 tgttgctttt ttgatatgat tttcttgcct atgtgtcagc cggagggact gctggcccgg
     6301 cctccctccc gtccaggcag gcacgctgca gagacagact tggtgccaag ggactccaag
     6361 gggctggggg aggaatgctg cacatggagg gcctggctca ctcagcagcc ttgggacgtg
     6421 cccctctgcc ttgggacacc gtgtcctggc ctctcaggct gtgccttccc caagtatcca
     6481 cttgtgctgg cccctgtgtt ctccagcctg tcggcaggcc ccgcatacat acgttgccca
     6541 tgttccatct ggcgaggcct gtgtccccag agcaggtagg cactgtaggg tttagggtgc
     6601 ccttcctctg tgcaagcccc acggggcctc tctgggttcc catctgagcc gcccctcctc
     6661 cctgcctatg ctgggcggga ccagcctcac cagggcccgc cgagcccagg ccccctgtgt
     6721 cagtcctgtg aaacaatgtc actgttgagg ccatgctgtg cccctccctc cagctgagtc
     6781 cacctgtccc agggcactgg agagcatagg tcgggcacag gcctgttcag ggcaccctgg
     6841 cccgtagctg gccctgccca tccacccagc caccctggac atggctgtgt cccccctcct
     6901 cccctcaagg ccccacgagg aaccctgaga gggcgtgggg ccacttgtga cgtggaggac
     6961 gtcactgcct gcctggctgg gggggccagc atcccctcct gaggatgcac gtccaggcct
     7021 ggccaccaac cgcagagtct ttatgtactg attttatttg acagctgggg tggcagggct
     7081 gttgtctttc ctgtcctggc ccgagggcag ctgaggacgc tgcacagcaa agctgtccag
     7141 ttgtggtgtg aggaggggtt gtccttatcc aggagtgacc gggggcgggc tgggcgtcta
     7201 ggcaacacca aggggcaggt gcggggtggc agagacggct gcaaagccag agacgcctta
     7261 aactgcaatg ttaggtctca tctggtcccg tccctgcagc cgccctcacc tgtcctggcg
     7321 ggggtggcag cccctccccc agcctctccc ccagcccagc caggctgtca ggctcagagg
     7381 ctgcaggagc ctcagaagtc ctgttactaa ctccaatttg tgtttgtgtc aatcaccgtg
     7441 aaataaagtc tgaacacttg caa
//
LOCUS       XM_032647253            7319 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus agrin (AGRN), transcript variant X2,
            mRNA.
ACCESSION   XM_032647253
VERSION     XM_032647253.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7319
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7319
                     /gene="AGRN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761348"
     CDS             81..6041
                     /gene="AGRN"
                     /codon_start=1
                     /product="agrin isoform X2"
                     /protein_id="XP_032503144.1"
                     /db_xref="GeneID:116761348"
                     /translation="MARLRPSCQAPLQPLLLLLVVAARALPGADGTCPERALERREEE
                     ANVVLTGTVEEILNVDPVQHTYSCKVRVWRYLKGKDVVAQESLLDGGNKVVIGGFGDP
                     LICDNQVSTGDTRIFFVNPAPPYLWPAHKNELMLNSSLMRITLRNLEEVEHCVEDKPG
                     THFTPVPPTPPDACRGMLCGFGAVCEPSAEEPGRASCVCKKSVCPSVVAPVCGSDAST
                     YSNECELQRAQCSQQRRIRLLRRGPCGTRDPCSNVTCSFGSTCARSADGLTATCLCPA
                     TCLGAPEGPVCGSDGTDYPSECQLLRQACAHQENVFKKFDGPCDPCQGALNDLSLICR
                     VDPRTRRPEMLLRPESCPPRQAPVCGDDGVTYGNDCVMGRTGATRGLLLQKVRSGQCQ
                     PRDQCPEACKFSAVCLSRRGRPRCSCDRVICDGAYKPVCAHDGRTYDNDCRRQQAECQ
                     QQRSIPAKRQGPCDQPPSPCRGVQCPFGAMCAVKNGEAECACQRACSGIYDPVCGSDG
                     VTYGSTCELEATACAFGREIRVARRGPCDRCGQCRFGALCEAETGRCVCPSECVASAQ
                     PVCGSDGRTYASECELHVHACTRQIGLHVASAGPCETCGDTVCAFGAVCSAGRCVCPR
                     CERPPPGPVCGSDGVTYRSSCELREAACQQQMQIEEARVGPCEQAECGSGGSGSGEHG
                     ECGQELCQQRGGIWDEDSEDGPCVCDFSCQSTLRSPVCGSDGVTYHTECELKKARCES
                     RPELYVVAQGACSAPTLAPLLPAVPLHCAQSPYGCCLDNITAARGVGLAGCPSSCQCN
                     PHGSYGGTCDPATGQCSCRPGVGGLKCDRCEPGFWNFRGIVTDGRSGCTHSPAPKTCA
                     EMPCEFGASCVEEAGSAHCVCPTPACPGANATKVCGSDGVTYGDECQLRTIACRQGLD
                     ISIQSLGPCQEDITSGPRPTSASVAPSGLDLSKALLPPPSALSLAPSSTARPASQPWT
                     TASVPRTAARPVLTMPPTAASPAASLVTSAFGSADGSGDEELSGDLEASAAGSGGLEP
                     PERDSAGTPGPPMERASCYNSPMGCCSDGKTPSLDAEGSNCPATKVFQGVLELEGVEG
                     QELFYTPEMADPKSELFGETARSIESALDDLFRNSDLKKDFRSVRLRDLGPGNSVRAI
                     VDVHFDPTTAFRAPDVCQALVRQIQASRRRSLGVRRPLQEHVRFMDFDWFPAFFTGAT
                     PAAATARATTVARLPPSAVTPRALYPSHTSRPVSRITVPFTARQPPTPAPSRVPAHRP
                     SPPGIQQPPRPCDSQPCLHGGTCQDQGSGEDFTCRCTAGRGGAVCEQAPRPSVPAFGG
                     HSFLAFPTLRAYHTLRLALEFRALEPQGLLLYNGNVRGKDFLALALLGGRVQLRFDTG
                     SGPAVLTSSVPVQPGRWHHLELSRHWRQGTLSVDGETPVLGQSPSGTDGLNLDMDLFV
                     GGVPEDQASVVLERTSVGVGLRGCIRLLDVNNQQLELSDWQGSATRSSGVGECGDHPC
                     VPNPCLGGAPCQALEAGMFHCRCLPGRFGPTCADEKDPCQPNPCHGAAPCRVLPQGEA
                     KCECPQGREGSLCQTVSEHENSQPFLADFSSFSYLELKGLHTFERDLGEKMALEVVFL
                     ARGPSGLLLYNGQKTDGKGDFVSLALHDRVLEFRYDLGKGAAVIRSKEPVALGAWTRV
                     SLERNGRKGAMRVDDGPRVLGESPVPHTVLNLKEPLYVGGAPDFSKLARAAAVSSGLD
                     GAIQLVSLNGRQLLAREHVVRAVGVSSFTDHPCTQAEGHPCLNGASCLPREASYECLC
                     PGGFSGLHCEKGLIEKSAGDLDTLAFDGRTYIEYLNAVAESEKALQSNYFELSLRTEA
                     TQGLVLWSGKATERADYIALAIVDGRLQLAYDLGSQPTVLRSTVPVSTNRWLRVRAHR
                     EQREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLEKLPVGQALPKAYGTGFVGCL
                     RDVVVGRRPLNLLEDAVTKPDLRPCPAP"
     misc_feature    177..524
                     /gene="AGRN"
                     /note="Agrin NtA domain; Region: NtA; pfam03146"
                     /db_xref="CDD:460825"
     misc_feature    690..812
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors and
                     follistatin-like domains. Kazal inhibitors inhibit serine
                     proteases, such as, trypsin, chyomotrypsin, avian
                     ovomucoids, and elastases. The inhibitory domain has one
                     reactive site peptide bond, which serves the...; Region:
                     KAZAL_FS; cd00104"
                     /db_xref="CDD:238052"
     misc_feature    900..1037
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1122..1253
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1332..1469
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1554..1688
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1746..1883
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1920..2078
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    2196..2336
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    2463..2591
                     /gene="AGRN"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(2463..2465,2469..2471,2499..2501,2520..2522,
                     2526..2528,2553..2555)
                     /gene="AGRN"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    2706..2849
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    <2874..3278
                     /gene="AGRN"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    <2874..>3047
                     /gene="AGRN"
                     /note="CARMIL C-terminus; Region: CARMIL_C; pfam16000"
                     /db_xref="CDD:464966"
     misc_feature    3297..3671
                     /gene="AGRN"
                     /note="Domain found in sea urchin sperm protein,
                     enterokinase, agrin; Region: SEA; smart00200"
                     /db_xref="CDD:214554"
     misc_feature    3900..3992
                     /gene="AGRN"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    4101..4496
                     /gene="AGRN"
                     /note="Laminin G domain; Region: Laminin_G_1; pfam00054"
                     /db_xref="CDD:395008"
     misc_feature    4905..5300
                     /gene="AGRN"
                     /note="Laminin G domain; Region: Laminin_G_1; pfam00054"
                     /db_xref="CDD:395008"
     misc_feature    5364..5462
                     /gene="AGRN"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5595..5987
                     /gene="AGRN"
                     /note="Laminin G domain; Region: Laminin_G_1; pfam00054"
                     /db_xref="CDD:395008"
ORIGIN      
        1 cgtcttgtcc agtccagtcc ctggcgcggc ccggcccgtg agcttgctcc ggccgccttc
       61 cgccgtcctc cgcccgcgcc atggccagac tgcggccgtc ctgccaggct cctctgcagc
      121 cactgctgct gctcctggtg gtggccgcgc gcgccctgcc cggcgccgac gggacgtgcc
      181 ccgaacgcgc gctggagagg cgggaggagg aggcgaacgt ggtgctcacc ggcaccgtgg
      241 aggagatcct caacgtggac ccggtgcagc acacgtactc gtgcaaggtt cgggtctggc
      301 ggtacttgaa gggcaaagat gtggtggccc aggagagcct gctggacgga ggcaacaagg
      361 tggtgattgg cggcttcgga gaccccctca tctgtgacaa ccaggtgtcc actggggaca
      421 ccaggatctt ctttgtgaac ccggccccgc cgtacctgtg gccggcccac aagaatgagc
      481 tgatgctcaa ctccagcctc atgcgcatca ccctgcggaa cctggaggag gtggaacact
      541 gcgtggaaga caaacctggg acccacttca cgccagtgcc cccaacgcct ccggatgcgt
      601 gccgaggaat gctgtgtggc ttcggcgccg tctgcgagcc cagcgcggag gagccgggcc
      661 gagcctcctg cgtgtgcaag aagagcgtct gccccagcgt ggtggcgccc gtgtgcggct
      721 cggacgcctc cacctacagc aacgagtgcg agctgcagcg ggcgcagtgc agccagcaga
      781 ggcgcatccg cctgctgcgc cgggggccct gcgggaccag ggacccctgc tccaatgtaa
      841 cctgcagctt tggcagcacc tgtgcgcgct ccgcagatgg actgacagcc acgtgcctgt
      901 gccctgccac gtgcctgggg gcccccgagg gccctgtgtg tggcagcgac ggcactgact
      961 accccagcga gtgccagctc ttgcgccaag cctgcgccca ccaggaaaac gtgttcaaga
     1021 agttcgacgg cccttgcgac ccctgccagg gcgccctcaa cgacctgagc ctcatctgcc
     1081 gtgtggaccc acgcacgcgg cgccccgaga tgctcctgcg gccagagagc tgccctccga
     1141 ggcaggcgcc cgtgtgtggg gatgatgggg ttacctatgg taacgactgc gtcatgggcc
     1201 gaaccggggc cacccgaggc ctcctcctcc agaaagtgcg ctctggccag tgccagcctc
     1261 gagaccagtg cccagaggcg tgcaagttca gtgccgtgtg cctgtcccgc cgaggccgcc
     1321 cccgctgttc ctgcgaccgt gtcatctgtg atggggccta caaacccgtg tgcgcccacg
     1381 acgggcgcac gtatgacaat gactgccggc gccagcaggc cgagtgtcag cagcagcgca
     1441 gcatccccgc caaacgccag ggcccgtgtg accagccccc gtccccgtgc cgcggggtgc
     1501 agtgtccatt cggggcgatg tgtgctgtga agaatgggga agccgagtgt gcgtgtcagc
     1561 gagcgtgttc aggcatctac gatcccgtgt gtggcagcga cggcgtcacg tacggcagca
     1621 cgtgcgagct ggaggctacg gcctgcgcct ttgggcggga gatccgggtg gctcgccgag
     1681 gaccctgtga ccgctgtggg cagtgccgct ttggagccct gtgcgaggct gagaccgggc
     1741 gctgcgtatg cccctccgag tgcgtggcct cggcccagcc cgtgtgtggc tctgacgggc
     1801 gcacatatgc cagcgagtgt gagctgcacg tgcacgcctg cacacgccag atcggcctgc
     1861 acgtggcctc ggctggaccc tgcgagacct gcggagacac agtgtgcgcc ttcggggccg
     1921 tgtgctcggc ggggcggtgc gtgtgtcccc ggtgcgagcg ccctccgccc ggccccgtgt
     1981 gtggcagcga cggcgtgacc taccgcagtt cctgcgagct ccgcgaggcg gcctgccagc
     2041 agcagatgca gatagaggag gcccgggtgg ggccgtgtga gcaggccgag tgcggctcgg
     2101 gaggctcggg ctctggagag cacggtgagt gtggacagga gctgtgccag cagcgaggcg
     2161 gcatctggga cgaggactca gaggacgggc cgtgcgtctg cgacttcagc tgccagagca
     2221 ccctgaggag cccggtgtgc ggctcggacg gggtcaccta ccacaccgag tgtgagctga
     2281 agaaggccag gtgtgaatcg cggccagagc tgtacgtcgt ggcccaggga gcctgcagtg
     2341 cccccacctt ggccccgctg ctgcctgcgg ttcccctgca ctgcgctcag agcccctacg
     2401 gctgctgcct ggacaacatc actgctgccc ggggtgtggg cctggccggc tgccccagct
     2461 cgtgccagtg caacccccac ggctcctacg gtggcacctg tgacccggcc acaggccagt
     2521 gctcctgccg tccgggcgtg gggggcctca agtgtgaccg ctgcgagccc ggcttctgga
     2581 actttcgtgg cattgtcacc gatggccgga gtggctgtac ccactccccg gcacccaaga
     2641 cctgtgctga gatgccttgt gagttcgggg cgtcctgcgt ggaggaggct ggctccgccc
     2701 actgtgtgtg cccaacaccc gcctgtccag gggccaatgc taccaaggtc tgtgggtcag
     2761 atggagtcac ctatggcgac gagtgccagc tgaggaccat tgcctgccgc cagggcttgg
     2821 acatctctat ccagagcctc ggcccttgcc aggaagacat cacttccggc ccccgtccga
     2881 catctgcctc tgtggccccc tcagggcttg acctgagcaa ggcgctgctg cctccaccca
     2941 gcgccctctc cctggctccc agcagtaccg ctcgacccgc atcgcaacct tggaccactg
     3001 ccagcgtccc caggaccgct gcaaggcctg tgctgaccat gcctcccacg gccgcctccc
     3061 cggcagccag cctcgtcaca tctgcctttg gcagcgccga tgggagcggc gacgaggagc
     3121 tgagtggtga cttggaggcc agtgcggctg gctcaggagg actcgagccc cctgagagag
     3181 acagcgctgg gacccccggg ccacccatgg agagggcttc ctgctacaac tcgcctatgg
     3241 gctgctgctc agatggcaag acgccctcac tggacgcaga gggctccaac tgtcctgcca
     3301 ccaaggtgtt ccagggtgtg ctggagctcg agggggtcga ggggcaggag ctgttctaca
     3361 cgccggagat ggccgacccc aagtccgagc tgtttgggga gacggccagg agcatcgaga
     3421 gcgcgctgga tgacctcttc cggaactcgg accttaagaa ggactttcga agtgtccgcc
     3481 tgcgggactt ggggcccggc aactccgtcc gagccatcgt ggatgtgcac ttcgacccca
     3541 ccacagcctt cagggcaccc gatgtgtgcc aggccctggt ccggcagatc caggcatcca
     3601 ggcgccggtc cctgggcgtg aggcggcctc tgcaggaaca cgtgcggttc atggacttcg
     3661 actggtttcc tgcgttcttc acgggagcca cccctgctgc agccacggcc agagccacca
     3721 ctgtggcccg cctgccacct tcagctgtga cccctcgggc cctctatccc agtcacacca
     3781 gccggcccgt cagcaggatc acagtgccct tcaccgcgcg ccagcccccc acccctgccc
     3841 ctagccgtgt gcctgcacac cggccctcgc ccccgggcat ccagcagccc ccaaggccct
     3901 gtgactccca gccctgcctc cacgggggga cctgccagga ccagggctca ggtgaagact
     3961 tcacctgccg ctgcacagcg ggcagggggg gcgctgtctg cgagcaggca ccgcgcccct
     4021 ccgtgccggc cttcgggggc cactccttcc tggccttccc caccctccgt gcctaccaca
     4081 ccctgcgcct ggcgcttgaa ttccgggcac tggagcccca gggtctgctg ctgtataacg
     4141 gcaatgtccg gggcaaggac ttcctggcac tggcgctgct ggggggccgc gtgcagctca
     4201 ggttcgacac aggttcgggg cccgcggtgc tcaccagctc agtgcccgtg cagcccggcc
     4261 ggtggcatca cctggagctg tctcggcact ggcgccaggg cactctctcg gtggatggtg
     4321 agacccctgt cctgggccag agccccagtg gcactgacgg cctcaacctg gacatggacc
     4381 tttttgtggg tggcgtcccg gaggaccagg cttccgtggt gctcgagcgg acctctgtcg
     4441 gcgttgggct gaggggctgc atccgcttgc tggacgtcaa caaccagcag ctggagctga
     4501 gtgactggca ggggtctgcg acccgaagct ctggagtggg cgagtgcggg gaccacccct
     4561 gtgtgcctaa cccctgcctc ggcggggccc cgtgccaggc cctggaggcc ggcatgttcc
     4621 actgtcggtg cctacccggc cgctttggcc cgacctgtgc tgacgagaag gacccttgtc
     4681 agccgaaccc ctgccatggg gcagccccct gccgcgtgct gccccagggc gaggccaagt
     4741 gcgagtgccc tcagggccgg gagggcagcc tctgccagac agtctcagag cacgagaata
     4801 gccagccttt cctggccgac ttcagcagct tctcctacct ggagctgaaa ggcctgcaca
     4861 cctttgagcg ggacctgggg gagaagatgg cactggaggt ggtgttcctg gcccgggggc
     4921 ccagcggcct gctcctctac aacgggcaga agacagacgg caagggcgac ttcgtgtcgc
     4981 tggcactgca cgaccgtgtc ctggagttcc gctacgactt gggcaagggg gcagcggtca
     5041 tcaggagcaa ggagccggtg gccctgggcg cctggaccag ggtctccctg gagcgaaacg
     5101 gacgcaaagg agccatgcgg gtcgacgatg ggccccgtgt gctgggggag tccccggtgc
     5161 cgcacaccgt cctcaacctg aaggagccgc tctacgtagg gggggcccct gacttcagca
     5221 agctggcccg ggcagccgcc gtgtcctctg gcttggatgg tgccatccag ctggtctcgc
     5281 tgaacggccg ccagctgctg gcccgggagc acgtggtgcg ggcggtgggt gtctcgtcct
     5341 tcacagacca cccttgtacc caggccgagg gtcacccttg cctcaacggg gcctcctgtc
     5401 tccctcggga ggcctcctac gagtgcctgt gtcctggggg cttctcaggg ctgcactgcg
     5461 agaagggcct gattgagaag tcggccgggg acttggacac gctggccttt gacggacgga
     5521 cctacatcga gtacctcaac gccgtggcgg agagtgagaa ggcactacag agcaactact
     5581 ttgagctgag cctgcgtacc gaggccacgc aggggctggt gctgtggagt ggcaaagcca
     5641 cagagcgggc cgactacatc gcactggcca tcgtggacgg gcgcctgcag ctggcttacg
     5701 acctgggctc ccagcccacg gtgctgcgct ccaccgtacc agtcagcacc aaccgctggt
     5761 tgcgggttag ggcacacagg gaacagaggg aaggctccct tcaggtgggc aatgaggccc
     5821 ctgtgactgg ttcctcccca ctgggtgcca cgcagctgga cacagatgga gccctgtggt
     5881 tgggtggcct agagaagctg cctgtgggcc aggccctgcc caaggcctac ggcacgggct
     5941 tcgtgggctg cctgcgggac gtggtggtgg gtcggcgccc gctgaacctg ctggaggatg
     6001 ccgtcaccaa gccggacctt cggccctgtc ctgccccgtg agccacaatg cagccacgac
     6061 ccaccctgct gtaattattt tctatttttg taaacttgtt gcttttttga tatgattttc
     6121 ttgcctatgt gtcagccgga gggactgctg gcccggcctc cctcccgtcc aggcaggcac
     6181 gctgcagaga cagacttggt gccaagggac tccaaggggc tgggggagga atgctgcaca
     6241 tggagggcct ggctcactca gcagccttgg gacgtgcccc tctgccttgg gacaccgtgt
     6301 cctggcctct caggctgtgc cttccccaag tatccacttg tgctggcccc tgtgttctcc
     6361 agcctgtcgg caggccccgc atacatacgt tgcccatgtt ccatctggcg aggcctgtgt
     6421 ccccagagca ggtaggcact gtagggttta gggtgccctt cctctgtgca agccccacgg
     6481 ggcctctctg ggttcccatc tgagccgccc ctcctccctg cctatgctgg gcgggaccag
     6541 cctcaccagg gcccgccgag cccaggcccc ctgtgtcagt cctgtgaaac aatgtcactg
     6601 ttgaggccat gctgtgcccc tccctccagc tgagtccacc tgtcccaggg cactggagag
     6661 cataggtcgg gcacaggcct gttcagggca ccctggcccg tagctggccc tgcccatcca
     6721 cccagccacc ctggacatgg ctgtgtcccc cctcctcccc tcaaggcccc acgaggaacc
     6781 ctgagagggc gtggggccac ttgtgacgtg gaggacgtca ctgcctgcct ggctgggggg
     6841 gccagcatcc cctcctgagg atgcacgtcc aggcctggcc accaaccgca gagtctttat
     6901 gtactgattt tatttgacag ctggggtggc agggctgttg tctttcctgt cctggcccga
     6961 gggcagctga ggacgctgca cagcaaagct gtccagttgt ggtgtgagga ggggttgtcc
     7021 ttatccagga gtgaccgggg gcgggctggg cgtctaggca acaccaaggg gcaggtgcgg
     7081 ggtggcagag acggctgcaa agccagagac gccttaaact gcaatgttag gtctcatctg
     7141 gtcccgtccc tgcagccgcc ctcacctgtc ctggcggggg tggcagcccc tcccccagcc
     7201 tctcccccag cccagccagg ctgtcaggct cagaggctgc aggagcctca gaagtcctgt
     7261 tactaactcc aatttgtgtt tgtgtcaatc accgtgaaat aaagtctgaa cacttgcaa
//
LOCUS       XM_032647261            6024 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus agrin (AGRN), transcript variant X3,
            mRNA.
ACCESSION   XM_032647261
VERSION     XM_032647261.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6024
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6024
                     /gene="AGRN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116761348"
     CDS             82..6012
                     /gene="AGRN"
                     /codon_start=1
                     /product="agrin isoform X3"
                     /protein_id="XP_032503152.1"
                     /db_xref="GeneID:116761348"
                     /translation="MARLRPSCQAPLQPLLLLLVVAARALPGADGTCPERALERREEE
                     ANVVLTGTVEEILNVDPVQHTYSCKVRVWRYLKGKDVVAQESLLDGGNKVVIGGFGDP
                     LICDNQVSTGDTRIFFVNPAPPYLWPAHKNELMLNSSLMRITLRNLEEVEHCVEDKPG
                     THFTPVPPTPPDACRGMLCGFGAVCEPSAEEPGRASCVCKKSVCPSVVAPVCGSDAST
                     YSNECELQRAQCSQQRRIRLLRRGPCGTRDPCSNVTCSFGSTCARSADGLTATCLCPA
                     TCLGAPEGPVCGSDGTDYPSECQLLRQACAHQENVFKKFDGPCDPCQGALNDLSLICR
                     VDPRTRRPEMLLRPESCPPRQAPVCGDDGVTYGNDCVMGRTGATRGLLLQKVRSGQCQ
                     PRDQCPEACKFSAVCLSRRGRPRCSCDRVICDGAYKPVCAHDGRTYDNDCRRQQAECQ
                     QQRSIPAKRQGPCDQPPSPCRGVQCPFGAMCAVKNGEAECACQRACSGIYDPVCGSDG
                     VTYGSTCELEATACAFGREIRVARRGPCDRCGQCRFGALCEAETGRCVCPSECVASAQ
                     PVCGSDGRTYASECELHVHACTRQIGLHVASAGPCETCGDTVCAFGAVCSAGRCVCPR
                     CERPPPGPVCGSDGVTYRSSCELREAACQQQMQIEEARVGPCEQAECGSGGSGSGEHG
                     ECGQELCQQRGGIWDEDSEDGPCVCDFSCQSTLRSPVCGSDGVTYHTECELKKARCES
                     RPELYVVAQGACSAPTLAPLLPAVPLHCAQSPYGCCLDNITAARGVGLAGCPSSCQCN
                     PHGSYGGTCDPATGQCSCRPGVGGLKCDRCEPGFWNFRGIVTDGRSGCTPCSCDPQGA
                     VRDDCEQMTGLCSCKPGVAGPRCGQCPDGRALGPAGCETDSPAPKTCAEMPCEFGASC
                     VEEAGSAHCVCPTPACPGANATKVCGSDGVTYGDECQLRTIACRQGLDISIQSLGPCQ
                     EDITSGPRPTSASVAPSGLDLSKALLPPPSALSLAPSSTARPASQPWTTASVPRTAAR
                     PVLTMPPTAASPAASLVTSAFGSADGSGDEELSGDLEASAAGSGGLEPPERDSAGTPG
                     PPMERASCYNSPMGCCSDGKTPSLDAEGSNCPATKVFQGVLELEGVEGQELFYTPEMA
                     DPKSELFGETARSIESALDDLFRNSDLKKDFRSVRLRDLGPGNSVRAIVDVHFDPTTA
                     FRAPDVCQALVRQIQASRRRSLGVRRPLQEHVRFMDFDWFPAFFTGATPAAATARATT
                     VARLPPSAVTPRALYPSHTSRPVSRITVPFTARQPPTPAPSRVPAHRPSPPGIQQPPR
                     PCDSQPCLHGGTCQDQGSGEDFTCRCTAGRGGAVCEQAPRPSVPAFGGHSFLAFPTLR
                     AYHTLRLALEFRALEPQGLLLYNGNVRGKDFLALALLGGRVQLRFDTGSGPAVLTSSV
                     PVQPGRWHHLELSRHWRQGTLSVDGETPVLGQSPSGTDGLNLDMDLFVGGVPEDQASV
                     VLERTSVGVGLRGCIRLLDVNNQQLELSDWQGSATRSSGVGECGDHPCVPNPCLGGAP
                     CQALEAGMFHCRCLPGRFGPTCADEKDPCQPNPCHGAAPCRVLPQGEAKCECPQGREG
                     SLCQTVSEHENSQPFLADFSSFSYLELKGLHTFERDLGEKMALEVVFLARGPSGLLLY
                     NGQKTDGKGDFVSLALHDRVLEFRYDLGKGAAVIRSKEPVALGAWTRVSLERNGRKGA
                     MRVDDGPRVLGESPVPHTVLNLKEPLYVGGAPDFSKLARAAAVSSGLDGAIQLVSLNG
                     RQLLAREHVVRAVGVSSFTDHPCTQAEGHPCLNGASCLPREASYECLCPGGFSGLHCE
                     KGLIEKSAGDLDTLAFDGRTYIEYLNAVAESEKALQSNYFELSLRTEATQGLVLWSGK
                     ATERADYIALAIVDGRLQLAYDLGSQPTVLRSTVPVSTNRWLRVRAHRSAGSLGPPRI
                     AAGAAWTCPARACLATRG"
     misc_feature    178..525
                     /gene="AGRN"
                     /note="Agrin NtA domain; Region: NtA; pfam03146"
                     /db_xref="CDD:460825"
     misc_feature    691..813
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors and
                     follistatin-like domains. Kazal inhibitors inhibit serine
                     proteases, such as, trypsin, chyomotrypsin, avian
                     ovomucoids, and elastases. The inhibitory domain has one
                     reactive site peptide bond, which serves the...; Region:
                     KAZAL_FS; cd00104"
                     /db_xref="CDD:238052"
     misc_feature    901..1038
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1123..1254
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1333..1470
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1555..1689
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1747..1884
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    1921..2079
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    2197..2337
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    2464..2592
                     /gene="AGRN"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(2464..2466,2470..2472,2500..2502,2521..2523,
                     2527..2529,2554..2556)
                     /gene="AGRN"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    2626..>2736
                     /gene="AGRN"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(2626..2628,2632..2634,2662..2664,2683..2685,
                     2689..2691,2716..2718)
                     /gene="AGRN"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    2851..2994
                     /gene="AGRN"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    <3019..3423
                     /gene="AGRN"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    <3019..>3192
                     /gene="AGRN"
                     /note="CARMIL C-terminus; Region: CARMIL_C; pfam16000"
                     /db_xref="CDD:464966"
     misc_feature    3442..3816
                     /gene="AGRN"
                     /note="Domain found in sea urchin sperm protein,
                     enterokinase, agrin; Region: SEA; smart00200"
                     /db_xref="CDD:214554"
     misc_feature    4045..4137
                     /gene="AGRN"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    4246..4641
                     /gene="AGRN"
                     /note="Laminin G domain; Region: Laminin_G_1; pfam00054"
                     /db_xref="CDD:395008"
     misc_feature    5050..5445
                     /gene="AGRN"
                     /note="Laminin G domain; Region: Laminin_G_1; pfam00054"
                     /db_xref="CDD:395008"
     misc_feature    5509..5607
                     /gene="AGRN"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5740..>5928
                     /gene="AGRN"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cl22861"
                     /db_xref="CDD:473984"
ORIGIN      
        1 ccgtcttgtc cagtccagtc cctggcgcgg cccggcccgt gagcttgctc cggccgcctt
       61 ccgccgtcct ccgcccgcgc catggccaga ctgcggccgt cctgccaggc tcctctgcag
      121 ccactgctgc tgctcctggt ggtggccgcg cgcgccctgc ccggcgccga cgggacgtgc
      181 cccgaacgcg cgctggagag gcgggaggag gaggcgaacg tggtgctcac cggcaccgtg
      241 gaggagatcc tcaacgtgga cccggtgcag cacacgtact cgtgcaaggt tcgggtctgg
      301 cggtacttga agggcaaaga tgtggtggcc caggagagcc tgctggacgg aggcaacaag
      361 gtggtgattg gcggcttcgg agaccccctc atctgtgaca accaggtgtc cactggggac
      421 accaggatct tctttgtgaa cccggccccg ccgtacctgt ggccggccca caagaatgag
      481 ctgatgctca actccagcct catgcgcatc accctgcgga acctggagga ggtggaacac
      541 tgcgtggaag acaaacctgg gacccacttc acgccagtgc ccccaacgcc tccggatgcg
      601 tgccgaggaa tgctgtgtgg cttcggcgcc gtctgcgagc ccagcgcgga ggagccgggc
      661 cgagcctcct gcgtgtgcaa gaagagcgtc tgccccagcg tggtggcgcc cgtgtgcggc
      721 tcggacgcct ccacctacag caacgagtgc gagctgcagc gggcgcagtg cagccagcag
      781 aggcgcatcc gcctgctgcg ccgggggccc tgcgggacca gggacccctg ctccaatgta
      841 acctgcagct ttggcagcac ctgtgcgcgc tccgcagatg gactgacagc cacgtgcctg
      901 tgccctgcca cgtgcctggg ggcccccgag ggccctgtgt gtggcagcga cggcactgac
      961 taccccagcg agtgccagct cttgcgccaa gcctgcgccc accaggaaaa cgtgttcaag
     1021 aagttcgacg gcccttgcga cccctgccag ggcgccctca acgacctgag cctcatctgc
     1081 cgtgtggacc cacgcacgcg gcgccccgag atgctcctgc ggccagagag ctgccctccg
     1141 aggcaggcgc ccgtgtgtgg ggatgatggg gttacctatg gtaacgactg cgtcatgggc
     1201 cgaaccgggg ccacccgagg cctcctcctc cagaaagtgc gctctggcca gtgccagcct
     1261 cgagaccagt gcccagaggc gtgcaagttc agtgccgtgt gcctgtcccg ccgaggccgc
     1321 ccccgctgtt cctgcgaccg tgtcatctgt gatggggcct acaaacccgt gtgcgcccac
     1381 gacgggcgca cgtatgacaa tgactgccgg cgccagcagg ccgagtgtca gcagcagcgc
     1441 agcatccccg ccaaacgcca gggcccgtgt gaccagcccc cgtccccgtg ccgcggggtg
     1501 cagtgtccat tcggggcgat gtgtgctgtg aagaatgggg aagccgagtg tgcgtgtcag
     1561 cgagcgtgtt caggcatcta cgatcccgtg tgtggcagcg acggcgtcac gtacggcagc
     1621 acgtgcgagc tggaggctac ggcctgcgcc tttgggcggg agatccgggt ggctcgccga
     1681 ggaccctgtg accgctgtgg gcagtgccgc tttggagccc tgtgcgaggc tgagaccggg
     1741 cgctgcgtat gcccctccga gtgcgtggcc tcggcccagc ccgtgtgtgg ctctgacggg
     1801 cgcacatatg ccagcgagtg tgagctgcac gtgcacgcct gcacacgcca gatcggcctg
     1861 cacgtggcct cggctggacc ctgcgagacc tgcggagaca cagtgtgcgc cttcggggcc
     1921 gtgtgctcgg cggggcggtg cgtgtgtccc cggtgcgagc gccctccgcc cggccccgtg
     1981 tgtggcagcg acggcgtgac ctaccgcagt tcctgcgagc tccgcgaggc ggcctgccag
     2041 cagcagatgc agatagagga ggcccgggtg gggccgtgtg agcaggccga gtgcggctcg
     2101 ggaggctcgg gctctggaga gcacggtgag tgtggacagg agctgtgcca gcagcgaggc
     2161 ggcatctggg acgaggactc agaggacggg ccgtgcgtct gcgacttcag ctgccagagc
     2221 accctgagga gcccggtgtg cggctcggac ggggtcacct accacaccga gtgtgagctg
     2281 aagaaggcca ggtgtgaatc gcggccagag ctgtacgtcg tggcccaggg agcctgcagt
     2341 gcccccacct tggccccgct gctgcctgcg gttcccctgc actgcgctca gagcccctac
     2401 ggctgctgcc tggacaacat cactgctgcc cggggtgtgg gcctggccgg ctgccccagc
     2461 tcgtgccagt gcaaccccca cggctcctac ggtggcacct gtgacccggc cacaggccag
     2521 tgctcctgcc gtccgggcgt ggggggcctc aagtgtgacc gctgcgagcc cggcttctgg
     2581 aactttcgtg gcattgtcac cgatggccgg agtggctgta ccccctgcag ctgtgacccc
     2641 cagggggccg tgcgggacga ctgtgaacag atgaccgggc tgtgctcctg taagcccggg
     2701 gtggccggac ccaggtgcgg gcagtgtcca gacggccgtg ccctgggccc tgctggctgt
     2761 gagacagact ccccggcacc caagacctgt gctgagatgc cttgtgagtt cggggcgtcc
     2821 tgcgtggagg aggctggctc cgcccactgt gtgtgcccaa cacccgcctg tccaggggcc
     2881 aatgctacca aggtctgtgg gtcagatgga gtcacctatg gcgacgagtg ccagctgagg
     2941 accattgcct gccgccaggg cttggacatc tctatccaga gcctcggccc ttgccaggaa
     3001 gacatcactt ccggcccccg tccgacatct gcctctgtgg ccccctcagg gcttgacctg
     3061 agcaaggcgc tgctgcctcc acccagcgcc ctctccctgg ctcccagcag taccgctcga
     3121 cccgcatcgc aaccttggac cactgccagc gtccccagga ccgctgcaag gcctgtgctg
     3181 accatgcctc ccacggccgc ctccccggca gccagcctcg tcacatctgc ctttggcagc
     3241 gccgatggga gcggcgacga ggagctgagt ggtgacttgg aggccagtgc ggctggctca
     3301 ggaggactcg agccccctga gagagacagc gctgggaccc ccgggccacc catggagagg
     3361 gcttcctgct acaactcgcc tatgggctgc tgctcagatg gcaagacgcc ctcactggac
     3421 gcagagggct ccaactgtcc tgccaccaag gtgttccagg gtgtgctgga gctcgagggg
     3481 gtcgaggggc aggagctgtt ctacacgccg gagatggccg accccaagtc cgagctgttt
     3541 ggggagacgg ccaggagcat cgagagcgcg ctggatgacc tcttccggaa ctcggacctt
     3601 aagaaggact ttcgaagtgt ccgcctgcgg gacttggggc ccggcaactc cgtccgagcc
     3661 atcgtggatg tgcacttcga ccccaccaca gccttcaggg cacccgatgt gtgccaggcc
     3721 ctggtccggc agatccaggc atccaggcgc cggtccctgg gcgtgaggcg gcctctgcag
     3781 gaacacgtgc ggttcatgga cttcgactgg tttcctgcgt tcttcacggg agccacccct
     3841 gctgcagcca cggccagagc caccactgtg gcccgcctgc caccttcagc tgtgacccct
     3901 cgggccctct atcccagtca caccagccgg cccgtcagca ggatcacagt gcccttcacc
     3961 gcgcgccagc cccccacccc tgcccctagc cgtgtgcctg cacaccggcc ctcgcccccg
     4021 ggcatccagc agcccccaag gccctgtgac tcccagccct gcctccacgg ggggacctgc
     4081 caggaccagg gctcaggtga agacttcacc tgccgctgca cagcgggcag ggggggcgct
     4141 gtctgcgagc aggcaccgcg cccctccgtg ccggccttcg ggggccactc cttcctggcc
     4201 ttccccaccc tccgtgccta ccacaccctg cgcctggcgc ttgaattccg ggcactggag
     4261 ccccagggtc tgctgctgta taacggcaat gtccggggca aggacttcct ggcactggcg
     4321 ctgctggggg gccgcgtgca gctcaggttc gacacaggtt cggggcccgc ggtgctcacc
     4381 agctcagtgc ccgtgcagcc cggccggtgg catcacctgg agctgtctcg gcactggcgc
     4441 cagggcactc tctcggtgga tggtgagacc cctgtcctgg gccagagccc cagtggcact
     4501 gacggcctca acctggacat ggaccttttt gtgggtggcg tcccggagga ccaggcttcc
     4561 gtggtgctcg agcggacctc tgtcggcgtt gggctgaggg gctgcatccg cttgctggac
     4621 gtcaacaacc agcagctgga gctgagtgac tggcaggggt ctgcgacccg aagctctgga
     4681 gtgggcgagt gcggggacca cccctgtgtg cctaacccct gcctcggcgg ggccccgtgc
     4741 caggccctgg aggccggcat gttccactgt cggtgcctac ccggccgctt tggcccgacc
     4801 tgtgctgacg agaaggaccc ttgtcagccg aacccctgcc atggggcagc cccctgccgc
     4861 gtgctgcccc agggcgaggc caagtgcgag tgccctcagg gccgggaggg cagcctctgc
     4921 cagacagtct cagagcacga gaatagccag cctttcctgg ccgacttcag cagcttctcc
     4981 tacctggagc tgaaaggcct gcacaccttt gagcgggacc tgggggagaa gatggcactg
     5041 gaggtggtgt tcctggcccg ggggcccagc ggcctgctcc tctacaacgg gcagaagaca
     5101 gacggcaagg gcgacttcgt gtcgctggca ctgcacgacc gtgtcctgga gttccgctac
     5161 gacttgggca agggggcagc ggtcatcagg agcaaggagc cggtggccct gggcgcctgg
     5221 accagggtct ccctggagcg aaacggacgc aaaggagcca tgcgggtcga cgatgggccc
     5281 cgtgtgctgg gggagtcccc ggtgccgcac accgtcctca acctgaagga gccgctctac
     5341 gtaggggggg cccctgactt cagcaagctg gcccgggcag ccgccgtgtc ctctggcttg
     5401 gatggtgcca tccagctggt ctcgctgaac ggccgccagc tgctggcccg ggagcacgtg
     5461 gtgcgggcgg tgggtgtctc gtccttcaca gaccaccctt gtacccaggc cgagggtcac
     5521 ccttgcctca acggggcctc ctgtctccct cgggaggcct cctacgagtg cctgtgtcct
     5581 gggggcttct cagggctgca ctgcgagaag ggcctgattg agaagtcggc cggggacttg
     5641 gacacgctgg cctttgacgg acggacctac atcgagtacc tcaacgccgt ggcggagagt
     5701 gagaaggcac tacagagcaa ctactttgag ctgagcctgc gtaccgaggc cacgcagggg
     5761 ctggtgctgt ggagtggcaa agccacagag cgggccgact acatcgcact ggccatcgtg
     5821 gacgggcgcc tgcagctggc ttacgacctg ggctcccagc ccacggtgct gcgctccacc
     5881 gtaccagtca gcaccaaccg ctggttgcgg gttagggcac acaggtcagc agggagcctg
     5941 gggccaccga gaatagcagc gggagctgcc tggacttgcc cggccagggc atgcctggcc
     6001 actcgtggct agggatggga agag
//
LOCUS       XM_032647273             885 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SFT2 domain containing 2 (SFT2D2), mRNA.
ACCESSION   XM_032647273
VERSION     XM_032647273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..885
                     /gene="SFT2D2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761366"
     CDS             101..583
                     /gene="SFT2D2"
                     /codon_start=1
                     /product="vesicle transport protein SFT2B"
                     /protein_id="XP_032503164.1"
                     /db_xref="GeneID:116761366"
                     /translation="MDKLKKVLSGQDTEDRGGLSEIVEAASLSSGTRIKGFIACFAAG
                     ILCSLLGTLLLWVPRKGLYLFAVFYTFGNIASLGSTLFLMGPMKQLKRMIEPTRLIAT
                     IMVLLCVTLTLCSAFWWHNRGLALIFCILQSLALMWYSLSYIPFARNAVKKCFAVCLS
                     "
     misc_feature    200..535
                     /gene="SFT2D2"
                     /note="Got1/Sft2-like family; Region: Got1; pfam04178"
                     /db_xref="CDD:461210"
ORIGIN      
        1 gttggctgcg gcgggggccg agcactcgga agagcccgcg actcagccag agcaacaggc
       61 ggccggccgg gggctggaac cggggtggac cgggcccgcc atggacaagc tgaagaaggt
      121 gctgagcggg caggacaccg aggaccgggg cggcctgtca gagattgtgg aggcagcttc
      181 attaagctcg ggcaccagaa taaaaggctt cattgcctgt tttgctgcgg gaattctctg
      241 ctcactgctg ggaactcttc tgctctgggt gcccaggaag ggactatacc tcttcgcagt
      301 gttttacacc tttggtaaca tcgcatctct tgggagcact ctcttcctca tgggaccgat
      361 gaaacagctg aagcgaatga tagagcctac gcgtttgatt gcaaccatca tggtgctgct
      421 gtgcgtgacg cttaccctgt gttctgcctt ttggtggcac aacagagggc ttgctctcat
      481 cttctgcatt ttgcagtctc tggccctgat gtggtatagc ctttcctaca taccattcgc
      541 aaggaacgct gtgaagaagt gttttgctgt atgtctttca taacacacgg ccggttttgc
      601 aaagctttgg aaggcatggt ggatggaagc tcgtggaccg tgttgtaaat atcttctaaa
      661 tctctgtctc acagacatgt gcctttgatc ttgcagtgac atgctgcttg cattctgaac
      721 acctgagggt tgcttttgga ggcaacggtg tgttcccaaa cccacatgtc tgtagcacga
      781 tatgagaggt gggttctgta tctgatggag tggaatcttc ctcgtgcgcc tttgcatggt
      841 gttccactga gttctcgtaa ataaaaacct tgttaagcag cagca
//
LOCUS       XM_032647284            1114 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 61-like
            (LOC116761375), mRNA.
ACCESSION   XM_032647284
VERSION     XM_032647284.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-384               VOSU01000011.1     46425219-46425602
            385-510             VOSU01000011.1     46429493-46429618
            511-511             "N"                1-1
            512-594             VOSU01000011.1     46429619-46429701
            595-719             VOSU01000011.1     46429703-46429827
            720-1114            VOSU01000011.1     46434840-46435234
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1114
                     /gene="LOC116761375"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins, and 91% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761375"
     CDS             370..951
                     /gene="LOC116761375"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: transmembrane protein
                     61-like"
                     /protein_id="XP_032503175.1"
                     /db_xref="GeneID:116761375"
                     /translation="MAARKTCDSGRVASTLCYCVTVTGMVVLVAGTLCFAWWSEEDAE
                     EEPXQPALPTGRPEPEAPGPLFRSVSFFCCGAGGLLLLSVKASTKGPPRWDSYHLSRD
                     LYYLTVEPLEKESCRTPEVVAIPTYEEVVHCQLAEGPLTPPAYPVEEDPERSASGDAL
                     LGAQPPLPPPSYESLILADGGFSGETTPGAACS"
     misc_feature    427..948
                     /gene="LOC116761375"
                     /note="TMEM61 protein family; Region: TMEM61; pfam15105"
                     /db_xref="CDD:464506"
ORIGIN      
        1 agtcgacagc gaagccggac tccacgcgcc cctcggcgcc cccacccggt ggccgagacc
       61 ctgcgcggtg aagcgggctt tgcaccgctc ccaccgggtc ggggcggcga tcggacggga
      121 cgcacggcgg cggacgagat gccctggacc agacccggag ccggacagta gcgcttctgc
      181 gggctcggag agctgggctg ggggacggtc gccgggccgc ccctaacgcc gggcgccccc
      241 tgcagaccag agagaccgcc cttcccaggt tcgctctgcc catgggcgcg acaaccatca
      301 tgccttcacg tgactccgct cggctcgcca ggctcccagc tccgggacca cgcctgaccc
      361 tgcagcgcga tggctgcgcg caagacgtgt gacagcggcc gtgtggcctc caccctgtgc
      421 tactgcgtga cggtcaccgg catggtggtt ctggtggccg ggacactctg cttcgcctgg
      481 tggagtgaag aagatgcaga agaagagcca ngccagccgg ctctgcccac aggacgccct
      541 gagcctgagg cccccggtcc cctgttcagg tcggtcagct tcttctgctg cggtgcaggt
      601 ggcctgctgc tgctgtctgt caaggccagc accaaggggc cgcctcgatg ggactcatat
      661 cacctctcca gagacctgta ctacctcact gtggagccct tggagaagga gagctgcagg
      721 accccagagg tggttgccat ccccacttat gaggaggtcg tgcactgcca actggctgag
      781 gggcccctga caccacctgc ataccccgtg gaggaagacc cggagcgcag tgcctcgggt
      841 gatgccctgc ttggggccca gccccccttg cctccgccca gctacgagag cctcatcctc
      901 gctgacggtg gcttctctgg agagacaaca cctggggctg cgtgctcctg accaggcccg
      961 gttcagattg caggggagga agttaaaggc ttctagcagg cctggaagcc agaagcaaat
     1021 gatgggcttc ttctagcctc tagtacagtg cctggtacac agcaggcact cagtgttgct
     1081 gaatgctgtt ttatttttct attgctgtgt aaca
//
LOCUS       XM_032647285            2723 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial contact site and cristae
            organizing system subunit 10 (MICOS10), transcript variant X1,
            mRNA.
ACCESSION   XM_032647285
VERSION     XM_032647285.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2723
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2723
                     /gene="MICOS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761387"
     CDS             88..357
                     /gene="MICOS10"
                     /codon_start=1
                     /product="MICOS complex subunit MIC10 isoform X1"
                     /protein_id="XP_032503176.1"
                     /db_xref="GeneID:116761387"
                     /translation="MSDSDLGRKWDRCLADAVVKIGTGFGLGLVFSLTFFKRRMWPLA
                     FGSGMGLGMAYSNCQHDFQAPYLLHGKYVKVCTELIFLFLSLESP"
     misc_feature    88..273
                     /gene="MICOS10"
                     /note="Domain of unknown function (DUF543); Region:
                     DUF543; pfam04418"
                     /db_xref="CDD:461300"
ORIGIN      
        1 gggaacggag gcggctctcg cgatagttgc ctggggtttg agcgcggggc ccgacggtcc
       61 ggaaagctgg aactgcgggt ggggaacatg tcggattcgg atctcggcag gaagtgggac
      121 cggtgcttgg cggatgccgt cgtgaagata ggtactggtt ttggattagg acttgttttc
      181 tcacttacct tctttaaaag aagaatgtgg ccattagcct ttggttctgg aatgggcttg
      241 ggaatggcct actccaactg tcagcatgat ttccaggctc catatcttct acatggaaaa
      301 tatgtcaaag tatgtacaga attgatattt ctctttcttt ctcttgagtc cccgtagaat
      361 tctttagagt gcgtataatt gataaataca ctgtcatgtc actgtggcac caccgaggtc
      421 ctaagtgctc aggagtctgc ctcagcgttt atccttaaat taaatatctg atacctgtag
      481 gtagcacttt tgttcgagat ctcagagtgc cctgtaaaca tctcacacac gttcaagcta
      541 aacctaaaga cttctgaact cagccattat tctgctttct actgaagagt gcaggttctt
      601 gactgtgagt cccacatgat tctgccgaag tccttgtcta cagatgggtt tttaatgatg
      661 cagacaggat gaaaaagtgt aacacatgcc tcaagaggaa ggaggtagca cggttcctaa
      721 ggtttttgtg tgtagcagcc ctttggacag aggtggtatt tatttttgta tccccagggc
      781 ctggaacaaa gtaggtgctc aaataaatgt aaaatgaatg aatgaaataa attgtatgtc
      841 ttattagatg tgctagtggc ctcaggctta ttaaggcata acctttatag caacacaagc
      901 ttcatgaaga gcttcacatt ctctggatgt gtagaatcat ctactttctt ggttaccctt
      961 gagctagaat cactgtcatc tgggcagcag cagggggcca gtggaaagag cacagaagcc
     1021 gggacaccca gatatgagtc ctggtccatc acttgctttc tatgtgctct tgagtttttc
     1081 acttctgaga ttgttttctg tctgtaaaat gagggcagta atttctgcct acagggttgt
     1141 tgtgaggatt aaatgtgaaa atgtttttaa gctatgaggt gctatatatg tatataaata
     1201 gaaatgttgg ttattataat tgaggccaac taagaaaggg tgactgactc gttcattgtt
     1261 ccaccataat aacaagtagg gcagaaaagg aggtacaaat gagtgtccca gttctggtca
     1321 aaagctgtag ccacaagggt ggccgaatct taaatgacag tatgccacca cagctcggta
     1381 gcctctatct gagaacgtgc tcagacggtc agctgcctac tgaacagccg gtgcaggcct
     1441 ggggagggga ctgggagcag gggagtcggc cagtggggca gccgggcagg cgtctcgcag
     1501 gccctctgta gtcatgtccc gtccctgcgc cagagccagg gtgagctgat cagagggaca
     1561 gcgcaagtga gcagaggcgc agctgcgggc cgtcagcgct gacgacaggc gctttccact
     1621 gctccctggc gcctcgctct cttggcacca cagctgaagt taaaggagaa cataaaggaa
     1681 cagggagagg agcttcaggt cttttaattg tttgaaatgt tttcattgct ccaaactgag
     1741 ttgtcatgga taaatggctc aggggtggtt atatgtggat gtatttaatg gctgagagtt
     1801 actgtggaaa atattgttac agtatttaca gccttgtgcg tacggctcca aaatggcctt
     1861 ttgtaacttt atctgaactg gagtctgtgc cttgacgtcg tcatcctcca ttctctgaaa
     1921 agaggaacaa aatcccaact tggggctttt tcaatggagt cagatcatgg taattgcttg
     1981 ctgagtgcct gctgtgacct gtggaccatc ctaggtgctc catctttaca ttctttctct
     2041 agacctctct cccagtagat ttgtgagaga ggttttacta ccctcattca gcagatgaga
     2101 aggccgaatt tcactgaggt ttaagaaact tgccgaagtt cctgtcatca gtaggccatt
     2161 tgattccaga gccatgctct ttccactcac ctgggatccg tccctttgat gggttttagg
     2221 aatatagtta tccaggtaca gactgttcag ccctgttgcg ttccttttct atttcccccc
     2281 ctcaaagatt gaggagccac tctgaagaac ctgggctgga aggatacagt cctcttgtga
     2341 gacaggttta aagcaaacag agtggtaagg cttggggccc atcggtcctc tgggtctgac
     2401 ctgcagcagc aagctagaga gggttgtcgg aacgctgtgc gcacagttct aacctgcgtg
     2461 tccttccttg caggagcagg agcagtgact cacgtctgag aacatcccgg tgggagggaa
     2521 agagaaatca cgtttattcc tcaggaatac tgaagtgccc tggagtaagc tgacactctt
     2581 ctgtaacagt gttatcagta atgctttaaa ctccagcaca ctgtttatgt atttgaaacc
     2641 aagtctgttt cttgttttgt attttctctc tggaaattgc aaggaggtgg tcttaaaaga
     2701 aataaatgaa acaaaaatag gca
//
LOCUS       XM_032647286             559 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial contact site and cristae
            organizing system subunit 10 (MICOS10), transcript variant X2,
            mRNA.
ACCESSION   XM_032647286
VERSION     XM_032647286.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..559
                     /gene="MICOS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761387"
     CDS             88..324
                     /gene="MICOS10"
                     /codon_start=1
                     /product="MICOS complex subunit MIC10 isoform X2"
                     /protein_id="XP_032503177.1"
                     /db_xref="GeneID:116761387"
                     /translation="MSDSDLGRKWDRCLADAVVKIGTGFGLGLVFSLTFFKRRMWPLA
                     FGSGMGLGMAYSNCQHDFQAPYLLHGKYVKEQEQ"
     misc_feature    88..273
                     /gene="MICOS10"
                     /note="Domain of unknown function (DUF543); Region:
                     DUF543; pfam04418"
                     /db_xref="CDD:461300"
ORIGIN      
        1 gggaacggag gcggctctcg cgatagttgc ctggggtttg agcgcggggc ccgacggtcc
       61 ggaaagctgg aactgcgggt ggggaacatg tcggattcgg atctcggcag gaagtgggac
      121 cggtgcttgg cggatgccgt cgtgaagata ggtactggtt ttggattagg acttgttttc
      181 tcacttacct tctttaaaag aagaatgtgg ccattagcct ttggttctgg aatgggcttg
      241 ggaatggcct actccaactg tcagcatgat ttccaggctc catatcttct acatggaaaa
      301 tatgtcaaag agcaggagca gtgactcacg tctgagaaca tcccggtggg agggaaagag
      361 aaatcacgtt tattcctcag gaatactgaa gtgccctgga gtaagctgac actcttctgt
      421 aacagtgtta tcagtaatgc tttaaactcc agcacactgt ttatgtattt gaaaccaagt
      481 ctgtttcttg ttttgtattt tctctctgga aattgcaagg aggtggtctt aaaagaaata
      541 aatgaaacaa aaataggca
//
LOCUS       XM_032647287            2942 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NBL1, DAN family BMP antagonist (NBL1),
            transcript variant X1, mRNA.
ACCESSION   XM_032647287
VERSION     XM_032647287.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2942
                     /gene="NBL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761414"
     CDS             1023..1667
                     /gene="NBL1"
                     /codon_start=1
                     /product="neuroblastoma suppressor of tumorigenicity 1
                     isoform X1"
                     /protein_id="XP_032503178.1"
                     /db_xref="GeneID:116761414"
                     /translation="MGFAVHLVSETGNVWPPGPCWPHLQSVLSSRAPKVTGTMLRVLV
                     GALLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFS
                     YSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQAC
                     GKEPSHEGLSVYVQGEDVQGSQPGLHSHPHPGGQPPEPEDPPGAPHAEEEGAED"
     misc_feature    1200..1496
                     /gene="NBL1"
                     /note="DAN domain; Region: DAN; pfam03045"
                     /db_xref="CDD:460786"
ORIGIN      
        1 gcctccccac catccccccg ggggaaggga actggcctga ggtgggtccc tgccgggtgc
       61 tgggtacttt catcgcatcc tcccagtcat tttcaaggaa agggctctgc tccccgtttt
      121 agggctgagg tcggtgggtg cagagaggca gactgtactt ccggaagtca cgcagctcct
      181 aggtgggagg cctgggactt gaacttaaga ggctcccggg gccatgcttc ggctggagct
      241 cagggctgct ggcctgggga ggctgagcgc ggcctggccc ctcctctgag gtcccagcca
      301 gggcttggtg agaggctgga cctggtgggt tgggttatag caccccctct gtgggcccag
      361 ctgaccttta gctgggccct agagaggggg gtaggtaagg gaggtggcct tctgcctcag
      421 tttatctcac ttcccctcgg cgtcggctac aagctgacac atgataacca gtcctcaccc
      481 tccagaccag tgactcccct gaaacactca ccggtgtccc atctcccact acaccttgtt
      541 attaacctca gcccccatct cagctccgct cccccttagc ctggcccata gcgtcagtcc
      601 taacctctcc taatccaaac cccaaaccgg ccccagcgct catctccagg ctactttcat
      661 tacaacctca ggctccgttc ccgagcctaa ggaaacctaa catcaccctc tgccccacct
      721 gacctggcct tcctgaggga tcctgatggg gtcaggcata ggacaaaagt ccccggacct
      781 ctctgaggtc tctaggggcc agtctcgcct ggggaggccc agggagctct ggccttaggt
      841 gggtctcctc tccgctggtg tgctacggtg gtcagaccct ggtgcagagg ctgattcccc
      901 agggacagaa aaggacctgg tggggtgaga aagcctcctg gatgctaagg gtgttgaaaa
      961 attaggttgc cggttaggaa caagtccatt ctgttttctt aggttgtggc tgtactgaaa
     1021 acatgggctt tgctgtccac cttgtgagtg agaccggaaa tgtgtggcct cctggaccct
     1081 gctggcctca cctgcagtct gtactcagtt caagggctcc aaaggtcacg ggcacgatgc
     1141 ttcgggtcct ggtgggggct ctcctccccg ccatgctgct ggctgctcca ccgcccatca
     1201 acaagctggc actgttcccg gataagagcg cctggtgcga ggccaagaac atcacccaga
     1261 tcgtgggcca cagcggctgt gaggccaagt ccatccagaa cagggcgtgc ctgggacagt
     1321 gcttcagcta cagcgttccc aataccttcc cgcagtctac agagtccctg gtgcactgcg
     1381 actcgtgcat gccggcccag tccatgtggg agatcgtgac cttggagtgc cctggccatg
     1441 aggaggtgcc cagggtggac aagctggtgg aaaagatcct gcactgcagc tgccaggcat
     1501 gcggcaagga gcccagtcac gaggggctga gcgtctatgt gcagggcgag gatgtgcagg
     1561 gctcccagcc cggcctccac tcccacccgc accctggcgg gcagcccccc gagcccgagg
     1621 atccccctgg ggccccccat gcagaggaag agggggctga ggactgaggc ccccgactct
     1681 tcctcccctc tcgttccctg tggaatgtgg ggtctcaccc tcccggggaa gagttggggg
     1741 agcggctgaa gccccccttt ggcactggat ggacttggat tcagacttgg acttggaacg
     1801 cttcccggtt gccacggaga tctgaagggg gtgggactgg cgccaagctg cacaatttaa
     1861 tatattcgcg agttgggggg aagaagcaga ggtcttcagg gttctttatc ggaggggggt
     1921 tctcttcttt tctgcctcct agacatgtgc cctggggagg ggggatagtt ggctaagctg
     1981 ctgagttggg gtgaggccgt ccaagacgcg ccaaggcccg cacggcccct cggtggggca
     2041 gggccctgag ggtgcagatg gtggcgccgg gccctgagct gaggtcgggc gccttgccag
     2101 tggcagccct gaggcagggc taggaagacc actggcagaa agaagcagga cgctccagcc
     2161 ccaccggctt cccgaaaggc ctcgcacccc cgtccccagg gcagcttctc cccggtggcc
     2221 ctccctcagt ggcatggttg ggagtcaggc ctgggcagga ccctgctgcc tcccggccct
     2281 ggagctggga gccaggctcc ctgcctgcct tggctttcgg gggtgcgggg gggggcgggg
     2341 gtagggaagg caggggagga ggagccttgc tgggccaggg ggaggggatg acgccctcga
     2401 ccagagggca tccttccctc ctcgccctct cccagatctt agtgcctctc cttgcccccc
     2461 aggttctagg cccctcaaag ctgatggagc cagcctcacc ctcttgggaa gctctttctg
     2521 aatatcggat gctggggagg ggtctccctt actcagaggt tcccaggagg gacctgggtg
     2581 ggatggattc tggatgagcc tcaaggaacg aggaagagga ggggtgaggg cgcgtggggc
     2641 ggctgtgttc actgtggctc tgcagctgcc tagtcccctc cccccactcc tcgcagccgc
     2701 actttagccc tagagggggt gcggggcccc ggggggggtg ctgggcaggc gggcagggaa
     2761 gaacgcccct cagtacccac agctgcctgc gtctgctctt ctgtcccagg gctgctgcca
     2821 gccccaccag ccccctgcct gggggtgccc cggccctcac ggctattccg acaagagctt
     2881 ctggagcttg taaccagtag gatggacccc gagttttctc atgaataaat ttgttcaaca
     2941 cc
//
LOCUS       XM_032647288            1911 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NBL1, DAN family BMP antagonist (NBL1),
            transcript variant X2, mRNA.
ACCESSION   XM_032647288
VERSION     XM_032647288.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1911
                     /gene="NBL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761414"
     CDS             16..636
                     /gene="NBL1"
                     /codon_start=1
                     /product="neuroblastoma suppressor of tumorigenicity 1
                     isoform X2"
                     /protein_id="XP_032503179.1"
                     /db_xref="GeneID:116761414"
                     /translation="MGFAVHLPPGPCWPHLQSVLSSRAPKVTGTMLRVLVGALLPAML
                     LAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFP
                     QSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEG
                     LSVYVQGEDVQGSQPGLHSHPHPGGQPPEPEDPPGAPHAEEEGAED"
     misc_feature    169..465
                     /gene="NBL1"
                     /note="DAN domain; Region: DAN; pfam03045"
                     /db_xref="CDD:460786"
ORIGIN      
        1 ggctgtactg aaaacatggg ctttgctgtc caccttcctc ctggaccctg ctggcctcac
       61 ctgcagtctg tactcagttc aagggctcca aaggtcacgg gcacgatgct tcgggtcctg
      121 gtgggggctc tcctccccgc catgctgctg gctgctccac cgcccatcaa caagctggca
      181 ctgttcccgg ataagagcgc ctggtgcgag gccaagaaca tcacccagat cgtgggccac
      241 agcggctgtg aggccaagtc catccagaac agggcgtgcc tgggacagtg cttcagctac
      301 agcgttccca ataccttccc gcagtctaca gagtccctgg tgcactgcga ctcgtgcatg
      361 ccggcccagt ccatgtggga gatcgtgacc ttggagtgcc ctggccatga ggaggtgccc
      421 agggtggaca agctggtgga aaagatcctg cactgcagct gccaggcatg cggcaaggag
      481 cccagtcacg aggggctgag cgtctatgtg cagggcgagg atgtgcaggg ctcccagccc
      541 ggcctccact cccacccgca ccctggcggg cagccccccg agcccgagga tccccctggg
      601 gccccccatg cagaggaaga gggggctgag gactgaggcc cccgactctt cctcccctct
      661 cgttccctgt ggaatgtggg gtctcaccct cccggggaag agttggggga gcggctgaag
      721 cccccctttg gcactggatg gacttggatt cagacttgga cttggaacgc ttcccggttg
      781 ccacggagat ctgaaggggg tgggactggc gccaagctgc acaatttaat atattcgcga
      841 gttgggggga agaagcagag gtcttcaggg ttctttatcg gaggggggtt ctcttctttt
      901 ctgcctccta gacatgtgcc ctggggaggg gggatagttg gctaagctgc tgagttgggg
      961 tgaggccgtc caagacgcgc caaggcccgc acggcccctc ggtggggcag ggccctgagg
     1021 gtgcagatgg tggcgccggg ccctgagctg aggtcgggcg ccttgccagt ggcagccctg
     1081 aggcagggct aggaagacca ctggcagaaa gaagcaggac gctccagccc caccggcttc
     1141 ccgaaaggcc tcgcaccccc gtccccaggg cagcttctcc ccggtggccc tccctcagtg
     1201 gcatggttgg gagtcaggcc tgggcaggac cctgctgcct cccggccctg gagctgggag
     1261 ccaggctccc tgcctgcctt ggctttcggg ggtgcggggg ggggcggggg tagggaaggc
     1321 aggggaggag gagccttgct gggccagggg gaggggatga cgccctcgac cagagggcat
     1381 ccttccctcc tcgccctctc ccagatctta gtgcctctcc ttgcccccca ggttctaggc
     1441 ccctcaaagc tgatggagcc agcctcaccc tcttgggaag ctctttctga atatcggatg
     1501 ctggggaggg gtctccctta ctcagaggtt cccaggaggg acctgggtgg gatggattct
     1561 ggatgagcct caaggaacga ggaagaggag gggtgagggc gcgtggggcg gctgtgttca
     1621 ctgtggctct gcagctgcct agtcccctcc ccccactcct cgcagccgca ctttagccct
     1681 agagggggtg cggggccccg gggggggtgc tgggcaggcg ggcagggaag aacgcccctc
     1741 agtacccaca gctgcctgcg tctgctcttc tgtcccaggg ctgctgccag ccccaccagc
     1801 cccctgcctg ggggtgcccc ggccctcacg gctattccga caagagcttc tggagcttgt
     1861 aaccagtagg atggaccccg agttttctca tgaataaatt tgttcaacac c
//
LOCUS       XM_032647289            1884 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NBL1, DAN family BMP antagonist (NBL1),
            transcript variant X3, mRNA.
ACCESSION   XM_032647289
VERSION     XM_032647289.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1884
                     /gene="NBL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761414"
     CDS             43..609
                     /gene="NBL1"
                     /codon_start=1
                     /product="neuroblastoma suppressor of tumorigenicity 1
                     isoform X3"
                     /protein_id="XP_032503180.1"
                     /db_xref="GeneID:116761414"
                     /translation="MCGSRAPKVTGTMLRVLVGALLPAMLLAAPPPINKLALFPDKSA
                     WCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSM
                     WEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDVQGSQPGLH
                     SHPHPGGQPPEPEDPPGAPHAEEEGAED"
     misc_feature    142..438
                     /gene="NBL1"
                     /note="DAN domain; Region: DAN; pfam03045"
                     /db_xref="CDD:460786"
ORIGIN      
        1 aaaacatggg ctttgctgtc caccttgtga gtgagaccgg aaatgtgtgg ttcaagggct
       61 ccaaaggtca cgggcacgat gcttcgggtc ctggtggggg ctctcctccc cgccatgctg
      121 ctggctgctc caccgcccat caacaagctg gcactgttcc cggataagag cgcctggtgc
      181 gaggccaaga acatcaccca gatcgtgggc cacagcggct gtgaggccaa gtccatccag
      241 aacagggcgt gcctgggaca gtgcttcagc tacagcgttc ccaatacctt cccgcagtct
      301 acagagtccc tggtgcactg cgactcgtgc atgccggccc agtccatgtg ggagatcgtg
      361 accttggagt gccctggcca tgaggaggtg cccagggtgg acaagctggt ggaaaagatc
      421 ctgcactgca gctgccaggc atgcggcaag gagcccagtc acgaggggct gagcgtctat
      481 gtgcagggcg aggatgtgca gggctcccag cccggcctcc actcccaccc gcaccctggc
      541 gggcagcccc ccgagcccga ggatccccct ggggcccccc atgcagagga agagggggct
      601 gaggactgag gcccccgact cttcctcccc tctcgttccc tgtggaatgt ggggtctcac
      661 cctcccgggg aagagttggg ggagcggctg aagcccccct ttggcactgg atggacttgg
      721 attcagactt ggacttggaa cgcttcccgg ttgccacgga gatctgaagg gggtgggact
      781 ggcgccaagc tgcacaattt aatatattcg cgagttgggg ggaagaagca gaggtcttca
      841 gggttcttta tcggaggggg gttctcttct tttctgcctc ctagacatgt gccctgggga
      901 ggggggatag ttggctaagc tgctgagttg gggtgaggcc gtccaagacg cgccaaggcc
      961 cgcacggccc ctcggtgggg cagggccctg agggtgcaga tggtggcgcc gggccctgag
     1021 ctgaggtcgg gcgccttgcc agtggcagcc ctgaggcagg gctaggaaga ccactggcag
     1081 aaagaagcag gacgctccag ccccaccggc ttcccgaaag gcctcgcacc cccgtcccca
     1141 gggcagcttc tccccggtgg ccctccctca gtggcatggt tgggagtcag gcctgggcag
     1201 gaccctgctg cctcccggcc ctggagctgg gagccaggct ccctgcctgc cttggctttc
     1261 gggggtgcgg gggggggcgg gggtagggaa ggcaggggag gaggagcctt gctgggccag
     1321 ggggagggga tgacgccctc gaccagaggg catccttccc tcctcgccct ctcccagatc
     1381 ttagtgcctc tccttgcccc ccaggttcta ggcccctcaa agctgatgga gccagcctca
     1441 ccctcttggg aagctctttc tgaatatcgg atgctgggga ggggtctccc ttactcagag
     1501 gttcccagga gggacctggg tgggatggat tctggatgag cctcaaggaa cgaggaagag
     1561 gaggggtgag ggcgcgtggg gcggctgtgt tcactgtggc tctgcagctg cctagtcccc
     1621 tccccccact cctcgcagcc gcactttagc cctagagggg gtgcggggcc ccgggggggg
     1681 tgctgggcag gcgggcaggg aagaacgccc ctcagtaccc acagctgcct gcgtctgctc
     1741 ttctgtccca gggctgctgc cagccccacc agccccctgc ctgggggtgc cccggccctc
     1801 acggctattc cgacaagagc ttctggagct tgtaaccagt aggatggacc ccgagttttc
     1861 tcatgaataa atttgttcaa cacc
//
LOCUS       XM_032647290            2062 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NBL1, DAN family BMP antagonist (NBL1),
            transcript variant X4, mRNA.
ACCESSION   XM_032647290
VERSION     XM_032647290.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2062
                     /gene="NBL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761414"
     CDS             257..787
                     /gene="NBL1"
                     /codon_start=1
                     /product="neuroblastoma suppressor of tumorigenicity 1
                     isoform X4"
                     /protein_id="XP_032503181.1"
                     /db_xref="GeneID:116761414"
                     /translation="MLRVLVGALLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVG
                     HSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHE
                     EVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDVQGSQPGLHSHPHPGGQPPEP
                     EDPPGAPHAEEEGAED"
     misc_feature    320..616
                     /gene="NBL1"
                     /note="DAN domain; Region: DAN; pfam03045"
                     /db_xref="CDD:460786"
ORIGIN      
        1 ccgcgcgccc gcctggggcc gcagacagcg cgcagcgcag ctcagccgag cctcgcgggg
       61 ccgccgccag ccctgccggc cgcctccccg agcctcccgg gggcgccgag cctgcccccc
      121 gcggcccgca gacagctccg caggaaccgg cgggcgcgcc gcgcttccca cagccgccgc
      181 gcgcgcgcct cctggaccct gctggcctca cctgcagtct gtactcagtt caagggctcc
      241 aaaggtcacg ggcacgatgc ttcgggtcct ggtgggggct ctcctccccg ccatgctgct
      301 ggctgctcca ccgcccatca acaagctggc actgttcccg gataagagcg cctggtgcga
      361 ggccaagaac atcacccaga tcgtgggcca cagcggctgt gaggccaagt ccatccagaa
      421 cagggcgtgc ctgggacagt gcttcagcta cagcgttccc aataccttcc cgcagtctac
      481 agagtccctg gtgcactgcg actcgtgcat gccggcccag tccatgtggg agatcgtgac
      541 cttggagtgc cctggccatg aggaggtgcc cagggtggac aagctggtgg aaaagatcct
      601 gcactgcagc tgccaggcat gcggcaagga gcccagtcac gaggggctga gcgtctatgt
      661 gcagggcgag gatgtgcagg gctcccagcc cggcctccac tcccacccgc accctggcgg
      721 gcagcccccc gagcccgagg atccccctgg ggccccccat gcagaggaag agggggctga
      781 ggactgaggc ccccgactct tcctcccctc tcgttccctg tggaatgtgg ggtctcaccc
      841 tcccggggaa gagttggggg agcggctgaa gccccccttt ggcactggat ggacttggat
      901 tcagacttgg acttggaacg cttcccggtt gccacggaga tctgaagggg gtgggactgg
      961 cgccaagctg cacaatttaa tatattcgcg agttgggggg aagaagcaga ggtcttcagg
     1021 gttctttatc ggaggggggt tctcttcttt tctgcctcct agacatgtgc cctggggagg
     1081 ggggatagtt ggctaagctg ctgagttggg gtgaggccgt ccaagacgcg ccaaggcccg
     1141 cacggcccct cggtggggca gggccctgag ggtgcagatg gtggcgccgg gccctgagct
     1201 gaggtcgggc gccttgccag tggcagccct gaggcagggc taggaagacc actggcagaa
     1261 agaagcagga cgctccagcc ccaccggctt cccgaaaggc ctcgcacccc cgtccccagg
     1321 gcagcttctc cccggtggcc ctccctcagt ggcatggttg ggagtcaggc ctgggcagga
     1381 ccctgctgcc tcccggccct ggagctggga gccaggctcc ctgcctgcct tggctttcgg
     1441 gggtgcgggg gggggcgggg gtagggaagg caggggagga ggagccttgc tgggccaggg
     1501 ggaggggatg acgccctcga ccagagggca tccttccctc ctcgccctct cccagatctt
     1561 agtgcctctc cttgcccccc aggttctagg cccctcaaag ctgatggagc cagcctcacc
     1621 ctcttgggaa gctctttctg aatatcggat gctggggagg ggtctccctt actcagaggt
     1681 tcccaggagg gacctgggtg ggatggattc tggatgagcc tcaaggaacg aggaagagga
     1741 ggggtgaggg cgcgtggggc ggctgtgttc actgtggctc tgcagctgcc tagtcccctc
     1801 cccccactcc tcgcagccgc actttagccc tagagggggt gcggggcccc ggggggggtg
     1861 ctgggcaggc gggcagggaa gaacgcccct cagtacccac agctgcctgc gtctgctctt
     1921 ctgtcccagg gctgctgcca gccccaccag ccccctgcct gggggtgccc cggccctcac
     1981 ggctattccg acaagagctt ctggagcttg taaccagtag gatggacccc gagttttctc
     2041 atgaataaat ttgttcaaca cc
//
LOCUS       XM_032647291            2022 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NBL1, DAN family BMP antagonist (NBL1),
            transcript variant X5, mRNA.
ACCESSION   XM_032647291
VERSION     XM_032647291.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2022
                     /gene="NBL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761414"
     CDS             217..747
                     /gene="NBL1"
                     /codon_start=1
                     /product="neuroblastoma suppressor of tumorigenicity 1
                     isoform X4"
                     /protein_id="XP_032503182.1"
                     /db_xref="GeneID:116761414"
                     /translation="MLRVLVGALLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVG
                     HSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHE
                     EVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDVQGSQPGLHSHPHPGGQPPEP
                     EDPPGAPHAEEEGAED"
     misc_feature    280..576
                     /gene="NBL1"
                     /note="DAN domain; Region: DAN; pfam03045"
                     /db_xref="CDD:460786"
ORIGIN      
        1 accgcgcgcc cgcctggggc cgcagacagc gcgcagcgca gctcagccga gcctcgcggg
       61 gccgccgcca gccctgccgg ccgcctcccc gagcctcccg ggggcgccga gcctgccccc
      121 cgcggcccgc agacagctcc gcaggaaccg gcgggcgcgc cgcgcttccc acagccgccg
      181 cgcgcgcgtt caagggctcc aaaggtcacg ggcacgatgc ttcgggtcct ggtgggggct
      241 ctcctccccg ccatgctgct ggctgctcca ccgcccatca acaagctggc actgttcccg
      301 gataagagcg cctggtgcga ggccaagaac atcacccaga tcgtgggcca cagcggctgt
      361 gaggccaagt ccatccagaa cagggcgtgc ctgggacagt gcttcagcta cagcgttccc
      421 aataccttcc cgcagtctac agagtccctg gtgcactgcg actcgtgcat gccggcccag
      481 tccatgtggg agatcgtgac cttggagtgc cctggccatg aggaggtgcc cagggtggac
      541 aagctggtgg aaaagatcct gcactgcagc tgccaggcat gcggcaagga gcccagtcac
      601 gaggggctga gcgtctatgt gcagggcgag gatgtgcagg gctcccagcc cggcctccac
      661 tcccacccgc accctggcgg gcagcccccc gagcccgagg atccccctgg ggccccccat
      721 gcagaggaag agggggctga ggactgaggc ccccgactct tcctcccctc tcgttccctg
      781 tggaatgtgg ggtctcaccc tcccggggaa gagttggggg agcggctgaa gccccccttt
      841 ggcactggat ggacttggat tcagacttgg acttggaacg cttcccggtt gccacggaga
      901 tctgaagggg gtgggactgg cgccaagctg cacaatttaa tatattcgcg agttgggggg
      961 aagaagcaga ggtcttcagg gttctttatc ggaggggggt tctcttcttt tctgcctcct
     1021 agacatgtgc cctggggagg ggggatagtt ggctaagctg ctgagttggg gtgaggccgt
     1081 ccaagacgcg ccaaggcccg cacggcccct cggtggggca gggccctgag ggtgcagatg
     1141 gtggcgccgg gccctgagct gaggtcgggc gccttgccag tggcagccct gaggcagggc
     1201 taggaagacc actggcagaa agaagcagga cgctccagcc ccaccggctt cccgaaaggc
     1261 ctcgcacccc cgtccccagg gcagcttctc cccggtggcc ctccctcagt ggcatggttg
     1321 ggagtcaggc ctgggcagga ccctgctgcc tcccggccct ggagctggga gccaggctcc
     1381 ctgcctgcct tggctttcgg gggtgcgggg gggggcgggg gtagggaagg caggggagga
     1441 ggagccttgc tgggccaggg ggaggggatg acgccctcga ccagagggca tccttccctc
     1501 ctcgccctct cccagatctt agtgcctctc cttgcccccc aggttctagg cccctcaaag
     1561 ctgatggagc cagcctcacc ctcttgggaa gctctttctg aatatcggat gctggggagg
     1621 ggtctccctt actcagaggt tcccaggagg gacctgggtg ggatggattc tggatgagcc
     1681 tcaaggaacg aggaagagga ggggtgaggg cgcgtggggc ggctgtgttc actgtggctc
     1741 tgcagctgcc tagtcccctc cccccactcc tcgcagccgc actttagccc tagagggggt
     1801 gcggggcccc ggggggggtg ctgggcaggc gggcagggaa gaacgcccct cagtacccac
     1861 agctgcctgc gtctgctctt ctgtcccagg gctgctgcca gccccaccag ccccctgcct
     1921 gggggtgccc cggccctcac ggctattccg acaagagctt ctggagcttg taaccagtag
     1981 gatggacccc gagttttctc atgaataaat ttgttcaaca cc
//
LOCUS       XM_032647292            2667 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 26 member 9
            (SLC26A9), mRNA.
ACCESSION   XM_032647292
VERSION     XM_032647292.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2667
                     /gene="SLC26A9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 Proteins, and 18%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761470"
     CDS             109..2472
                     /gene="SLC26A9"
                     /codon_start=1
                     /product="solute carrier family 26 member 9"
                     /protein_id="XP_032503183.1"
                     /db_xref="GeneID:116761470"
                     /translation="MSQPRPRYVVDRATYSLTLFDDEFEKKDRTYPLGEKLRNAFRCS
                     SAKIKTAVFGLFPVLSWLPKYKIKDYIIPDLLGGISGGSIQVPQGMAFALLANLPAVN
                     GLYSSFFPLLTYFFLGGIHQMVPGTFAVISILVGNICLQLAPESKFRVFNNATNESHV
                     DTVAMEAERLHVSATLACLTAVIQMGLGFVQFGFVAIYLSESFIRGFMTAAGLQILIS
                     VLKYIFGLTIPSYTGPGSIVFTFIDICKNLPHTNIASLVFALISSVFLVLVKELNTRF
                     MHKIRFPIPTEMIVVVVATAISGGCKMPKKYHMQIVGEIQRGFPTPVLPVVSQWKDMI
                     GTAFSLAIVGYVINLAVGRTLASKHGYDVDSNQEMIALGCSNFFGSFFKIHVICCALS
                     VTLAVDGAGGKSQMSSLCVSLVVMITMLVLGSYLYPLPKAVLGALIAVNLKNSLKQLA
                     DPYYLWRKSKLDCCVWVVSFLSAFFLSLPYGVAVGVAFSTLVVIFQTQFRNGYTLAQV
                     MDTDIYVNPKTYNRAQEIQGIKIITYCSPLYFANSEIFRQKVTAKTGVDPQKVLLAKQ
                     KYLKRQEKGRTVPIQQRKSLFMKNKTVSLQELQQDFENGSPTDPNNNQTPANGASVSY
                     ITFSPDSSTAASCEPPASAEPSDILASVPPFVTFHTLIFDMSGVSFVDLMGIKALAKL
                     SSTYGRIGVKVFLVNIHAQVYNDINHGGIFEDGCLERNHVFPSIHDAVLFAQAKAREV
                     APARNFQGAPVDPELSLYDSEEDSPSCWDLEQEMFGSMFHAETLTAL"
     misc_feature    277..2295
                     /gene="SLC26A9"
                     /note="putative transporter; Provisional; Region:
                     PRK11660; cl46980"
                     /db_xref="CDD:481320"
ORIGIN      
        1 agccctttcg cacacctctg gaacaccttt cggctgcccg ctccccagac acacctgcag
       61 ccctgcccag ccggctctgc tcacccactg cttgtaaatg ccccagacat gagccagccc
      121 aggccccgct acgtggtaga cagagctacc tactccctca ccctcttcga tgatgagttt
      181 gagaagaagg atcggacgta cccactggga gaaaaacttc gcaatgcctt cagatgttcc
      241 tcggccaaga tcaaaaccgc agtgttcggg ctgttccctg tgctctcttg gctccccaag
      301 tacaagatca aagattacat catccctgac cttcttggcg gcatcagcgg tggatccatc
      361 caggtcccac aaggcatggc atttgctctg ctggccaacc ttcctgctgt caacggcctc
      421 tactcctcct tcttccccct cctgacctac ttcttcctgg gaggtatcca ccagatggtg
      481 ccaggtacat ttgccgttat cagcatcctg gtgggtaaca tctgtctgca gctggcccca
      541 gagtcgaaat tccgggtctt caacaatgcc accaacgaga gccatgtgga cacagtggcc
      601 atggaggccg agaggctgca cgtgtcggca acgctagcct gcctgactgc cgtcatccag
      661 atgggcctgg gcttcgtaca gttcggtttt gtggccatct acctctctga gtccttcatc
      721 cggggcttca tgacagccgc tggcctgcag atcctgatct ccgtgctcaa gtacatcttc
      781 ggactgacca tcccctccta cacaggccca gggtccatcg tctttacctt cattgacatt
      841 tgcaaaaacc tcccccacac caacatcgcc tcgctcgtct tcgccctcat cagcagcgtg
      901 ttcctggtgc tggtgaagga gctcaacacc cgcttcatgc acaagatccg cttccccatc
      961 cctacagaaa tgatcgtggt agtggtggca acagctatct ctgggggctg caagatgccc
     1021 aaaaagtatc acatgcagat cgtgggagag atccaacgag ggttccccac tcccgtgttg
     1081 cctgtggtct cacagtggaa ggacatgatt ggcacagcct tctccctggc catcgtgggc
     1141 tatgtcatca acttggctgt gggccggacc ctggccagca agcacggcta tgacgtggat
     1201 tctaaccagg agatgatcgc cctgggctgc agcaacttct tcggctcctt ctttaaaatc
     1261 catgtcattt gctgtgctct ctctgtcact ctggctgtgg atggagctgg aggaaaatcc
     1321 cagatgtcaa gcctgtgcgt ctccctggtg gtgatgatca caatgctggt cctggggtcc
     1381 tacctctacc ctctccccaa ggctgtgcta ggagccctga ttgctgtcaa cctcaagaac
     1441 tccctcaagc aactcgccga cccctactac ctgtggagga agagcaagct ggactgttgc
     1501 gtctgggtgg tgagcttcct ctctgccttc ttcctgagcc tgccgtatgg tgtggcagtg
     1561 ggtgtcgcct tctccaccct ggttgtgatc ttccagaccc aatttcgaaa tggctatact
     1621 ttggcccaag tcatggacac tgacatttat gtgaatccca agacctataa tagggcccag
     1681 gaaatccaag ggataaagat catcacttac tgctcccctc tctactttgc caactcggaa
     1741 atcttcaggc aaaaggtcac tgccaagaca ggtgtggacc cccagaaagt attgctggcc
     1801 aagcaaaaat acctcaagag gcaggagaag gggagaacgg tgcccataca acagaggaag
     1861 tccctattta tgaaaaacaa gactgtctcc ctgcaggagc ttcagcagga ctttgagaat
     1921 ggctccccaa ctgaccccaa caacaaccag acgcctgcta atggcgccag cgtgtcctac
     1981 atcaccttca gccctgacag ctccacagct gccagttgtg agcccccggc ctctgctgag
     2041 cccagtgaca tcctggccag cgtcccaccc tttgtcacct tccacacgct catctttgac
     2101 atgagtgggg tcagctttgt ggatttgatg ggcatcaaag ccctggccaa gctgagctcc
     2161 acctacggga ggatcggtgt gaaggtcttc ttggtgaaca ttcatgccca ggtgtacaat
     2221 gacattaacc atgggggcat cttcgaagat gggtgtctag agcgtaacca cgtctttccc
     2281 agcatacacg acgcagtcct gtttgcccag gcaaaggcca gggaagtggc cccagcacgc
     2341 aacttccaag gggctccagt ggaccccgag ctctctttgt atgattcgga ggaggacagt
     2401 cccagctgct gggacttaga gcaggagatg ttcggcagca tgtttcacgc agagaccctg
     2461 accgccctgt gagggcccag ccagttcccg tgctgcctgc agagcacctg gtacctggga
     2521 ctcccatgaa ggatgagcct gggatcatgg agagtggcgg gtagaggaga acacctccac
     2581 caggactcca gtacctctcc accctcctcc tcctctctca ttcccctccc ggcatctcta
     2641 gagcgagtca atctcaacgg cagggag
//
LOCUS       XM_032647293            3914 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium channel tetramerization domain
            containing 3 (KCTD3), transcript variant X1, mRNA.
ACCESSION   XM_032647293
VERSION     XM_032647293.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3914
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3914
                     /gene="KCTD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 17 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761486"
     CDS             338..2788
                     /gene="KCTD3"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein KCTD3 isoform
                     X1"
                     /protein_id="XP_032503184.1"
                     /db_xref="GeneID:116761486"
                     /translation="MSGGHCGSFAAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFF
                     SSLLSGRISTLRDETGAIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGI
                     TPLVRRLLLCEELERSSCGSVLFHGYLPPPGIPSRKINNTTRSSADSRNGLNFTEGEA
                     RGNGTQPVLSGTGEETVRLGFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQ
                     QVFTSPYLDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVF
                     SLGVPVDALFFIGNQLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCN
                     NGSIYYIDMQKFPLRMKDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYG
                     TSSGAVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTV
                     TRFRGMISTQPGSTPLASFKILSLEETESHGSYSSGNDIGPFGERDDQQVFIQKVVPI
                     TNKLFVRLSSTGKRICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQ
                     MWDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCDLSTSRCATPNISPATSVVQHSRL
                     RESSSSLQLQHHETIHEAATYGSMRPYRESPLLARARRTESFHSYRDFQTVNLNRNVE
                     RAVPEDGNLGPVQAEVKRATGECNVCERKSPGTEVKSLRESDSGVEVHKIAEGFLESK
                     KRSSEDENENKVELRKKGGFDGGGFLGRKKVPHLASSPSTSDGGTDSPGTASPSPTKT
                     TPSPRHKKSDSSGQEYSL"
     misc_feature    386..694
                     /gene="KCTD3"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in SH3KBP1-binding
                     protein 1 (SHKBP1); Region: BTB_POZ_SHKBP1; cd18393"
                     /db_xref="CDD:349701"
     misc_feature    815..>1687
                     /gene="KCTD3"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
ORIGIN      
        1 ggcgctgcgg ccgcagcggc tgcgagggag gcagcggaga gctgacggca ggccacggct
       61 gggcggcctg gaggccacgg ggggtggagg cccggccgcc atcccgcggc acgggagcgg
      121 aggggaagag gcggacgccc gccagccccg cccggtcgcc gagaacgtgg gggaggctcc
      181 gcgcgccgcc cgccccccgg cgcccgccgc cctgctggcc ctgcagcctc cgcagccgcc
      241 gccgccgccg ccgctgcctc cgcctcgggc tcccgccgcg ggctcgacgg ccccggccgg
      301 ggagggaggg cggcgggtgc cgccggagcc gccagacatg tcgggagggc actgcggcag
      361 cttcgccgcg gcggcggccg gcagcggcga gatcgtgcag ctgaacgtgg ggggaaccag
      421 gtttagtacc tcaagacaaa cacttatgtg gattccagat tctttttttt ccagtttgct
      481 gagtggaaga atttcaacac ttcgagatga aactggtgct atatttattg atagagatcc
      541 agcagcgttt gcacccattt taaattttct tcggacaaaa gaactagact taaggggagt
      601 gagtattaat gttctcaggc atgaagcaga attttatgga atcactccat tagtaagaag
      661 gcttctctta tgtgaagaac tggagcgttc atcttgtggc agtgtccttt ttcatggtta
      721 cttgcctcca ccaggtattc ctagtcgtaa aataaacaac actactagat cctctgctga
      781 ttctagaaat ggactaaatt ttacagaagg tgaagctcga ggaaatggta cacagcctgt
      841 tctctctgga actggggaag agactgttag gttaggattt cctgtggatc cacgaaaggt
      901 actaatagta gctggccatc acaactggat tgtagctgca tatgcccatt ttgctgtgtg
      961 ttacagaatc aaagaatctt caggatggca acaagtgttt acaagcccgt atttggattg
     1021 gactattgaa cgagtagctc taaatgcaaa agtggttgga ggtccacatg gagacaaaga
     1081 caaaatggtc gccgttgcct cagagagtag catcatctta tggagtgtcc aagatggagg
     1141 aagtggaagt gaaattggag tgttcagcct tggtgttcct gtagacgctc tcttcttcat
     1201 cggtaaccag ttggtggcca cgagtcatac agggaaagtg ggagtgtgga atgctgtcac
     1261 ccagcactgg caggttcaag acgttgttcc tataactagt tatgacactg ctgggtcgtt
     1321 ccttctactg ggatgtaaca atggatcaat atattatata gatatgcaga agttcccttt
     1381 gcgaatgaag gataacgatc ttcttgtaac tgaactttat catgatcctt caaatgatgc
     1441 tattactgct ctgagtgttt acctcacacc caaaacaagt gtcagtggta actggattga
     1501 gattgcctat ggtacgagct ctggagcagt acgagtaatt gtgcagcacc cagagacggt
     1561 tgggtcaggc cctcagcttt ttcagacctt cacagttcac cgaagtcctg tcacaaaaat
     1621 catgctctca gagaagcatc ttgtatcagt ctgtgcagat aataatcatg tccggacatg
     1681 gacggtaaca cgattcagag gaatgatctc tactcagccc ggctctactc ctctagcatc
     1741 gttcaagata ctgtccctgg aggagacaga aagccatgga agctattcct ctggaaacga
     1801 catagggcca tttggagagc gagatgatca acaggtgttt atccagaaag ttgttcccat
     1861 cactaacaaa ctgtttgtaa gactctcatc tactgggaag agaatctgtg agatccaagc
     1921 tgttgactgt actacaatat cctcatttac agtgagagaa tgtgagggct ccagtaggat
     1981 gggctcaagg ccaaggcgct acttgttcac gggccacaca aatggcagca ttcagatgtg
     2041 ggatctgacc actgccatgg atatggttaa caaaagtgag gataaggatg taggtggtcc
     2101 gactgaagag gagctactca aattactgga tcagtgtgat ctgagcacat ctcgctgcgc
     2161 tactcctaat atcagtccag caacttctgt ggttcagcat agccgtcttc gtgaatcaag
     2221 ttctagtctt cagctccagc accatgaaac catccatgaa gcagctactt acggttccat
     2281 gaggccttac agagaaagtc ccttgttagc aagagcaagg aggactgaga gctttcacag
     2341 ttacagggac ttccagactg tgaacttgaa cagaaatgta gaaagagctg tccctgaaga
     2401 tggtaacttg ggtccagtac aagctgaagt gaagcgggca acaggggaat gtaatgtgtg
     2461 tgagagaaag tctcctggaa ccgaagttaa aagtttaaga gaatcagata gtggagtgga
     2521 ggtgcataaa atagctgaag gttttctaga atccaagaaa aggtcatcag aagatgaaaa
     2581 tgaaaataaa gtggagttac ggaagaaagg aggatttgat ggaggaggat tccttggaag
     2641 aaagaaagtc ccccacctgg catcatcacc aagtacctct gatggaggaa ctgactcacc
     2701 tggtactgca tccccatctc ctacgaagac tactccatct cctcggcaca aaaaaagtga
     2761 ttcttcaggt caagagtaca gcttgtgaaa actcagcaaa atgagtagtt tcattaattc
     2821 agatgagagt taaactttac tggagttcaa cacattagct tttacaccaa aaccttacaa
     2881 attaagattg gacttcattc agtatctttt tgacagaatt acctggggta aggagataaa
     2941 ataaccatat catctcttca gatcttttgg aaattttttt tagttttaca ggcacattta
     3001 acatcatttg taaagcagga gtctacttca gtgtttactc tgtggatttt ggaagcatag
     3061 taccatgtct taataagatg gtgcccatat cgatgagcat ccccttagag tgtgggaacc
     3121 aacagactgc attcctcatg ttgatcatgc ctgagatttg tcttgcaatg ttatattaag
     3181 tgaattacat aattctcttt ggagcttagt ctcccaaccc ttattgtgat tgcaaagtgg
     3241 tttaccaggt atttaatgag gtgctatgtt tgtgaaaaaa tatgtaactc aaaaacacta
     3301 ttgaatacca gattactctg tgtagtagga agtcctttag gataatttta ctttaattgt
     3361 ggtcattttc tgattctcat tgttggagtt cttaaatctt agcaagcatc accaatatta
     3421 aatattaaat tggtcaaaag tttaaacttt ctttaaagtt ggagcagttg tctgtgtttg
     3481 aacagatgaa gtaaaaataa taaagacagc tttgagtgat cacaaaggaa aactgtacca
     3541 aaactgtacc agtcgctagt cagccttgtt ttaggagcca cgatattttt ttcctgtgtt
     3601 aataatcaag ataattaatt aaattagaat gtggccattt tgttaagctt gagactgcag
     3661 ttctgaattt tttggttaaa ggttttggct gctgtagaaa tattttaaat atattttgaa
     3721 ttataagaaa aaaatctttg tatttttttc catttaattg gaatgatttc caagtttctg
     3781 caaataaggt aattgtaaat ttaaagcatt aagcatttat tggtgaataa tgtatatatt
     3841 cccattctga gaaatataag tggatcaagt caaaataaat aaagtttcct atattgccag
     3901 tggtttcaca gcca
//
LOCUS       XM_032647295            3910 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium channel tetramerization domain
            containing 3 (KCTD3), transcript variant X2, mRNA.
ACCESSION   XM_032647295
VERSION     XM_032647295.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3910
                     /gene="KCTD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761486"
     CDS             340..2784
                     /gene="KCTD3"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein KCTD3 isoform
                     X2"
                     /protein_id="XP_032503186.1"
                     /db_xref="GeneID:116761486"
                     /translation="MSGGHCGSFAAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFF
                     SSLLSGRISTLRDETGAIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGI
                     TPLVRRLLLCEELERSSCGSVLFHGYLPPPGIPSRKINNTTRSSADSRNGLNFTEGEA
                     RGNGTQPVLSGTGEETVRLGFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQ
                     QVFTSPYLDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVF
                     SLGVPVDALFFIGNQLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCN
                     NGSIYYIDMQKFPLRMKDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYG
                     TSSGAVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTV
                     TRFRGMISTQPGSTPLASFKILSLEETESHGSYSSGNDIGPFGERDDQQVFIQKVVPI
                     TNKLFVRLSSTGKRICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQ
                     MWDLTTAMDMVNKSEDKGGPTEEELLKLLDQCDLSTSRCATPNISPATSVVQHSRLRE
                     SSSSLQLQHHETIHEAATYGSMRPYRESPLLARARRTESFHSYRDFQTVNLNRNVERA
                     VPEDGNLGPVQAEVKRATGECNVCERKSPGTEVKSLRESDSGVEVHKIAEGFLESKKR
                     SSEDENENKVELRKKGGFDGGGFLGRKKVPHLASSPSTSDGGTDSPGTASPSPTKTTP
                     SPRHKKSDSSGQEYSL"
     misc_feature    388..696
                     /gene="KCTD3"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in SH3KBP1-binding
                     protein 1 (SHKBP1); Region: BTB_POZ_SHKBP1; cd18393"
                     /db_xref="CDD:349701"
     misc_feature    817..>1689
                     /gene="KCTD3"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
ORIGIN      
        1 ccggcgctgc ggccgcagcg gctgcgaggg aggcagcgga gagctgacgg caggccacgg
       61 ctgggcggcc tggaggccac ggggggtgga ggcccggccg ccatcccgcg gcacgggagc
      121 ggaggggaag aggcggacgc ccgccagccc cgcccggtcg ccgagaacgt gggggaggct
      181 ccgcgcgccg cccgcccccc ggcgcccgcc gccctgctgg ccctgcagcc tccgcagccg
      241 ccgccgccgc cgccgctgcc tccgcctcgg gctcccgccg cgggctcgac ggccccggcc
      301 ggggagggag ggcggcgggt gccgccggag ccgccagaca tgtcgggagg gcactgcggc
      361 agcttcgccg cggcggcggc cggcagcggc gagatcgtgc agctgaacgt ggggggaacc
      421 aggtttagta cctcaagaca aacacttatg tggattccag attctttttt ttccagtttg
      481 ctgagtggaa gaatttcaac acttcgagat gaaactggtg ctatatttat tgatagagat
      541 ccagcagcgt ttgcacccat tttaaatttt cttcggacaa aagaactaga cttaagggga
      601 gtgagtatta atgttctcag gcatgaagca gaattttatg gaatcactcc attagtaaga
      661 aggcttctct tatgtgaaga actggagcgt tcatcttgtg gcagtgtcct ttttcatggt
      721 tacttgcctc caccaggtat tcctagtcgt aaaataaaca acactactag atcctctgct
      781 gattctagaa atggactaaa ttttacagaa ggtgaagctc gaggaaatgg tacacagcct
      841 gttctctctg gaactgggga agagactgtt aggttaggat ttcctgtgga tccacgaaag
      901 gtactaatag tagctggcca tcacaactgg attgtagctg catatgccca ttttgctgtg
      961 tgttacagaa tcaaagaatc ttcaggatgg caacaagtgt ttacaagccc gtatttggat
     1021 tggactattg aacgagtagc tctaaatgca aaagtggttg gaggtccaca tggagacaaa
     1081 gacaaaatgg tcgccgttgc ctcagagagt agcatcatct tatggagtgt ccaagatgga
     1141 ggaagtggaa gtgaaattgg agtgttcagc cttggtgttc ctgtagacgc tctcttcttc
     1201 atcggtaacc agttggtggc cacgagtcat acagggaaag tgggagtgtg gaatgctgtc
     1261 acccagcact ggcaggttca agacgttgtt cctataacta gttatgacac tgctgggtcg
     1321 ttccttctac tgggatgtaa caatggatca atatattata tagatatgca gaagttccct
     1381 ttgcgaatga aggataacga tcttcttgta actgaacttt atcatgatcc ttcaaatgat
     1441 gctattactg ctctgagtgt ttacctcaca cccaaaacaa gtgtcagtgg taactggatt
     1501 gagattgcct atggtacgag ctctggagca gtacgagtaa ttgtgcagca cccagagacg
     1561 gttgggtcag gccctcagct ttttcagacc ttcacagttc accgaagtcc tgtcacaaaa
     1621 atcatgctct cagagaagca tcttgtatca gtctgtgcag ataataatca tgtccggaca
     1681 tggacggtaa cacgattcag aggaatgatc tctactcagc ccggctctac tcctctagca
     1741 tcgttcaaga tactgtccct ggaggagaca gaaagccatg gaagctattc ctctggaaac
     1801 gacatagggc catttggaga gcgagatgat caacaggtgt ttatccagaa agttgttccc
     1861 atcactaaca aactgtttgt aagactctca tctactggga agagaatctg tgagatccaa
     1921 gctgttgact gtactacaat atcctcattt acagtgagag aatgtgaggg ctccagtagg
     1981 atgggctcaa ggccaaggcg ctacttgttc acgggccaca caaatggcag cattcagatg
     2041 tgggatctga ccactgccat ggatatggtt aacaaaagtg aggataaggg tggtccgact
     2101 gaagaggagc tactcaaatt actggatcag tgtgatctga gcacatctcg ctgcgctact
     2161 cctaatatca gtccagcaac ttctgtggtt cagcatagcc gtcttcgtga atcaagttct
     2221 agtcttcagc tccagcacca tgaaaccatc catgaagcag ctacttacgg ttccatgagg
     2281 ccttacagag aaagtccctt gttagcaaga gcaaggagga ctgagagctt tcacagttac
     2341 agggacttcc agactgtgaa cttgaacaga aatgtagaaa gagctgtccc tgaagatggt
     2401 aacttgggtc cagtacaagc tgaagtgaag cgggcaacag gggaatgtaa tgtgtgtgag
     2461 agaaagtctc ctggaaccga agttaaaagt ttaagagaat cagatagtgg agtggaggtg
     2521 cataaaatag ctgaaggttt tctagaatcc aagaaaaggt catcagaaga tgaaaatgaa
     2581 aataaagtgg agttacggaa gaaaggagga tttgatggag gaggattcct tggaagaaag
     2641 aaagtccccc acctggcatc atcaccaagt acctctgatg gaggaactga ctcacctggt
     2701 actgcatccc catctcctac gaagactact ccatctcctc ggcacaaaaa aagtgattct
     2761 tcaggtcaag agtacagctt gtgaaaactc agcaaaatga gtagtttcat taattcagat
     2821 gagagttaaa ctttactgga gttcaacaca ttagctttta caccaaaacc ttacaaatta
     2881 agattggact tcattcagta tctttttgac agaattacct ggggtaagga gataaaataa
     2941 ccatatcatc tcttcagatc ttttggaaat tttttttagt tttacaggca catttaacat
     3001 catttgtaaa gcaggagtct acttcagtgt ttactctgtg gattttggaa gcatagtacc
     3061 atgtcttaat aagatggtgc ccatatcgat gagcatcccc ttagagtgtg ggaaccaaca
     3121 gactgcattc ctcatgttga tcatgcctga gatttgtctt gcaatgttat attaagtgaa
     3181 ttacataatt ctctttggag cttagtctcc caacccttat tgtgattgca aagtggttta
     3241 ccaggtattt aatgaggtgc tatgtttgtg aaaaaatatg taactcaaaa acactattga
     3301 ataccagatt actctgtgta gtaggaagtc ctttaggata attttacttt aattgtggtc
     3361 attttctgat tctcattgtt ggagttctta aatcttagca agcatcacca atattaaata
     3421 ttaaattggt caaaagttta aactttcttt aaagttggag cagttgtctg tgtttgaaca
     3481 gatgaagtaa aaataataaa gacagctttg agtgatcaca aaggaaaact gtaccaaaac
     3541 tgtaccagtc gctagtcagc cttgttttag gagccacgat atttttttcc tgtgttaata
     3601 atcaagataa ttaattaaat tagaatgtgg ccattttgtt aagcttgaga ctgcagttct
     3661 gaattttttg gttaaaggtt ttggctgctg tagaaatatt ttaaatatat tttgaattat
     3721 aagaaaaaaa tctttgtatt tttttccatt taattggaat gatttccaag tttctgcaaa
     3781 taaggtaatt gtaaatttaa agcattaagc atttattggt gaataatgta tatattccca
     3841 ttctgagaaa tataagtgga tcaagtcaaa ataaataaag tttcctatat tgccagtggt
     3901 ttcacagcca
//
LOCUS       XM_032647305            3905 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium channel tetramerization domain
            containing 3 (KCTD3), transcript variant X3, mRNA.
ACCESSION   XM_032647305
VERSION     XM_032647305.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3905
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3905
                     /gene="KCTD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761486"
     CDS             341..2779
                     /gene="KCTD3"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein KCTD3 isoform
                     X3"
                     /protein_id="XP_032503196.1"
                     /db_xref="GeneID:116761486"
                     /translation="MSGGHCGSFAAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFF
                     SSLLSGRISTLRDETGAIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGI
                     TPLVRRLLLCEELERSSCGSVLFHGYLPPPGIPSRKINNTTRSSADSRNGLNFTEGEA
                     RGNGTQPVLSGTGEETVRLGFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQ
                     QVFTSPYLDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVF
                     SLGVPVDALFFIGNQLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCN
                     NGSIYYIDMQKFPLRMKDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYG
                     TSSGAVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTV
                     TRFRGMISTQPGSTPLASFKILSLEETESHGSYSSGNDIGPFGERDDQQVFIQKVVPI
                     TNKLFVRLSSTGKRICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQ
                     MWDLTTAMDMVNKNVGGPTEEELLKLLDQCDLSTSRCATPNISPATSVVQHSRLRESS
                     SSLQLQHHETIHEAATYGSMRPYRESPLLARARRTESFHSYRDFQTVNLNRNVERAVP
                     EDGNLGPVQAEVKRATGECNVCERKSPGTEVKSLRESDSGVEVHKIAEGFLESKKRSS
                     EDENENKVELRKKGGFDGGGFLGRKKVPHLASSPSTSDGGTDSPGTASPSPTKTTPSP
                     RHKKSDSSGQEYSL"
     misc_feature    389..697
                     /gene="KCTD3"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in SH3KBP1-binding
                     protein 1 (SHKBP1); Region: BTB_POZ_SHKBP1; cd18393"
                     /db_xref="CDD:349701"
     misc_feature    818..>1690
                     /gene="KCTD3"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
ORIGIN      
        1 gccggcgctg cggccgcagc ggctgcgagg gaggcagcgg agagctgacg gcaggccacg
       61 gctgggcggc ctggaggcca cggggggtgg aggcccggcc gccatcccgc ggcacgggag
      121 cggaggggaa gaggcggacg cccgccagcc ccgcccggtc gccgagaacg tgggggaggc
      181 tccgcgcgcc gcccgccccc cggcgcccgc cgccctgctg gccctgcagc ctccgcagcc
      241 gccgccgccg ccgccgctgc ctccgcctcg ggctcccgcc gcgggctcga cggccccggc
      301 cggggaggga gggcggcggg tgccgccgga gccgccagac atgtcgggag ggcactgcgg
      361 cagcttcgcc gcggcggcgg ccggcagcgg cgagatcgtg cagctgaacg tggggggaac
      421 caggtttagt acctcaagac aaacacttat gtggattcca gattcttttt tttccagttt
      481 gctgagtgga agaatttcaa cacttcgaga tgaaactggt gctatattta ttgatagaga
      541 tccagcagcg tttgcaccca ttttaaattt tcttcggaca aaagaactag acttaagggg
      601 agtgagtatt aatgttctca ggcatgaagc agaattttat ggaatcactc cattagtaag
      661 aaggcttctc ttatgtgaag aactggagcg ttcatcttgt ggcagtgtcc tttttcatgg
      721 ttacttgcct ccaccaggta ttcctagtcg taaaataaac aacactacta gatcctctgc
      781 tgattctaga aatggactaa attttacaga aggtgaagct cgaggaaatg gtacacagcc
      841 tgttctctct ggaactgggg aagagactgt taggttagga tttcctgtgg atccacgaaa
      901 ggtactaata gtagctggcc atcacaactg gattgtagct gcatatgccc attttgctgt
      961 gtgttacaga atcaaagaat cttcaggatg gcaacaagtg tttacaagcc cgtatttgga
     1021 ttggactatt gaacgagtag ctctaaatgc aaaagtggtt ggaggtccac atggagacaa
     1081 agacaaaatg gtcgccgttg cctcagagag tagcatcatc ttatggagtg tccaagatgg
     1141 aggaagtgga agtgaaattg gagtgttcag ccttggtgtt cctgtagacg ctctcttctt
     1201 catcggtaac cagttggtgg ccacgagtca tacagggaaa gtgggagtgt ggaatgctgt
     1261 cacccagcac tggcaggttc aagacgttgt tcctataact agttatgaca ctgctgggtc
     1321 gttccttcta ctgggatgta acaatggatc aatatattat atagatatgc agaagttccc
     1381 tttgcgaatg aaggataacg atcttcttgt aactgaactt tatcatgatc cttcaaatga
     1441 tgctattact gctctgagtg tttacctcac acccaaaaca agtgtcagtg gtaactggat
     1501 tgagattgcc tatggtacga gctctggagc agtacgagta attgtgcagc acccagagac
     1561 ggttgggtca ggccctcagc tttttcagac cttcacagtt caccgaagtc ctgtcacaaa
     1621 aatcatgctc tcagagaagc atcttgtatc agtctgtgca gataataatc atgtccggac
     1681 atggacggta acacgattca gaggaatgat ctctactcag cccggctcta ctcctctagc
     1741 atcgttcaag atactgtccc tggaggagac agaaagccat ggaagctatt cctctggaaa
     1801 cgacataggg ccatttggag agcgagatga tcaacaggtg tttatccaga aagttgttcc
     1861 catcactaac aaactgtttg taagactctc atctactggg aagagaatct gtgagatcca
     1921 agctgttgac tgtactacaa tatcctcatt tacagtgaga gaatgtgagg gctccagtag
     1981 gatgggctca aggccaaggc gctacttgtt cacgggccac acaaatggca gcattcagat
     2041 gtgggatctg accactgcca tggatatggt taacaaaaat gtaggtggtc cgactgaaga
     2101 ggagctactc aaattactgg atcagtgtga tctgagcaca tctcgctgcg ctactcctaa
     2161 tatcagtcca gcaacttctg tggttcagca tagccgtctt cgtgaatcaa gttctagtct
     2221 tcagctccag caccatgaaa ccatccatga agcagctact tacggttcca tgaggcctta
     2281 cagagaaagt cccttgttag caagagcaag gaggactgag agctttcaca gttacaggga
     2341 cttccagact gtgaacttga acagaaatgt agaaagagct gtccctgaag atggtaactt
     2401 gggtccagta caagctgaag tgaagcgggc aacaggggaa tgtaatgtgt gtgagagaaa
     2461 gtctcctgga accgaagtta aaagtttaag agaatcagat agtggagtgg aggtgcataa
     2521 aatagctgaa ggttttctag aatccaagaa aaggtcatca gaagatgaaa atgaaaataa
     2581 agtggagtta cggaagaaag gaggatttga tggaggagga ttccttggaa gaaagaaagt
     2641 cccccacctg gcatcatcac caagtacctc tgatggagga actgactcac ctggtactgc
     2701 atccccatct cctacgaaga ctactccatc tcctcggcac aaaaaaagtg attcttcagg
     2761 tcaagagtac agcttgtgaa aactcagcaa aatgagtagt ttcattaatt cagatgagag
     2821 ttaaacttta ctggagttca acacattagc ttttacacca aaaccttaca aattaagatt
     2881 ggacttcatt cagtatcttt ttgacagaat tacctggggt aaggagataa aataaccata
     2941 tcatctcttc agatcttttg gaaatttttt ttagttttac aggcacattt aacatcattt
     3001 gtaaagcagg agtctacttc agtgtttact ctgtggattt tggaagcata gtaccatgtc
     3061 ttaataagat ggtgcccata tcgatgagca tccccttaga gtgtgggaac caacagactg
     3121 cattcctcat gttgatcatg cctgagattt gtcttgcaat gttatattaa gtgaattaca
     3181 taattctctt tggagcttag tctcccaacc cttattgtga ttgcaaagtg gtttaccagg
     3241 tatttaatga ggtgctatgt ttgtgaaaaa atatgtaact caaaaacact attgaatacc
     3301 agattactct gtgtagtagg aagtccttta ggataatttt actttaattg tggtcatttt
     3361 ctgattctca ttgttggagt tcttaaatct tagcaagcat caccaatatt aaatattaaa
     3421 ttggtcaaaa gtttaaactt tctttaaagt tggagcagtt gtctgtgttt gaacagatga
     3481 agtaaaaata ataaagacag ctttgagtga tcacaaagga aaactgtacc aaaactgtac
     3541 cagtcgctag tcagccttgt tttaggagcc acgatatttt tttcctgtgt taataatcaa
     3601 gataattaat taaattagaa tgtggccatt ttgttaagct tgagactgca gttctgaatt
     3661 ttttggttaa aggttttggc tgctgtagaa atattttaaa tatattttga attataagaa
     3721 aaaaatcttt gtattttttt ccatttaatt ggaatgattt ccaagtttct gcaaataagg
     3781 taattgtaaa tttaaagcat taagcattta ttggtgaata atgtatatat tcccattctg
     3841 agaaatataa gtggatcaag tcaaaataaa taaagtttcc tatattgcca gtggtttcac
     3901 agcca
//
LOCUS       XM_032647328            4335 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD and tetratricopeptide repeats 1
            (WDTC1), transcript variant X1, mRNA.
ACCESSION   XM_032647328
VERSION     XM_032647328.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4335
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4335
                     /gene="WDTC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761518"
     CDS             489..2531
                     /gene="WDTC1"
                     /codon_start=1
                     /product="WD and tetratricopeptide repeats protein 1
                     isoform X1"
                     /protein_id="XP_032503219.1"
                     /db_xref="GeneID:116761518"
                     /translation="MAKVNITRDLICRQIKERGALSFERRYHVTDPFIRRLGLEAELQ
                     GHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKQFLPH
                     AGDRILITGAADSKVHVHDLTVKETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLI
                     RQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMI
                     HNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVT
                     FSPNGTELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVS
                     NGLHLHSNGFRLPESRGHVSPQVELPPYLERVKQQANEAFACQQWTQAIQLYSKAVQR
                     APHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYV
                     AEALECLDDFKGKFPEQAHSSACDALGRDITAALFSKNDGDEKKGAGGGGSGPVRLRS
                     TSRKDSISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFF
                     IWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRPESEDLTGRVV
                     EDMEGASQANQRRMNADPLEVMLLNMGYRITGLSSAGAGASDDEDSSEGQVQCRPS"
     misc_feature    <603..1136
                     /gene="WDTC1"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    639..752
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    765..884
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    903..1025
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1185..1304
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1566..>1895
                     /gene="WDTC1"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; Region: Spy; COG3914"
                     /db_xref="CDD:443119"
     misc_feature    order(1587..1592,1599..1604,1608..1610,1680..1682,
                     1689..1694,1701..1706,1710..1715,1791..1793,1800..1805,
                     1812..1817,1824..1826)
                     /gene="WDTC1"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    1587..1661
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1674..1775
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1788..1862
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    2106..2228
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <2133..>2375
                     /gene="WDTC1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
ORIGIN      
        1 ctgtagcgta gccgctggct gtgaggcgcg gggcgggggc ggagactgcg tggcgcaggc
       61 gcggtgctgg gcttctcctg ggtccccaga cagctggagg agataaacag aggaggagga
      121 gggaggggag tgcgtgtgtg agagcgcgcg agggagtgtg agtgtgtgtg agcgcgggtg
      181 tgaggcggtg cgcaggggcg ggcggaggcg ctgtccggcc ccggccaggc gccaggcagg
      241 gagcatggga aggggctaga gctgcccggg ccctccagcc ccctccccgg gatccgcgcc
      301 ccccctccgg ggagaggggc cgggcccccc ggacggacat gggctcctga agttgcgccg
      361 ccaccggtcc tgggaagagg cctgacaggt aattaaatgt gtgtcttgtg gacctgggct
      421 tggctggaat gctcaagggt cctgaagatc cttctatagc ttccttctgt tgaatccatt
      481 aagagaagat ggcaaaagtc aacataacta gagacctcat ctgtaggcag ataaaggagc
      541 ggggtgccct gagctttgag cggcgctacc atgtcactga cccctttatc agacggctgg
      601 gcctggaagc agagctgcag ggtcactcag gatgtgtcaa ctgtctggag tggaatgaga
      661 aaggagactt gctggcctct ggttctgatg accagcacac gattgtgtgg gacccgctgc
      721 accataagaa gctgctttcc atgcacacag gacacactgc aaatatcttt tctgtcaagc
      781 agttcctgcc tcacgctggg gaccgcatct tgatcacagg ggcagctgac tccaaggtgc
      841 atgtccacga cctgacagta aaggagacga tccacatgtt tggagaccac acaaaccggg
      901 tgaaacgcat cgccacggcg cccatgtggc ccaacacatt ctggagcgct gctgaggatg
      961 ggcttatccg ccagtatgac cttcgggaga acagcaaaca ctcggaggtg ctgattgacc
     1021 tgacagagta ctgtggccag ctggtagagg ccaagtgcct caccgtcaac ccccaggaca
     1081 acaactgcct ggcagtgggg gccagcgggc cctttgtgag gctctatgac attcgcatga
     1141 tccataacca cagaaagagc atgaagcaga gcccttcagc aggtgtgcac accttctgtg
     1201 accggcagaa gccccttccg gatggtgcag cccagtatta cgtagcaggt cacctgccag
     1261 tgaagctgcc cgactacaac aaccgtctga gagtgctggt cgccacctat gtgaccttca
     1321 gccccaatgg cacggagctg ctggtcaaca tgggaggaga gcaggtctat ttgtttgacc
     1381 tgacttacaa gcagcggccg tacaccttcc tcttgcctag aaaatgccac tcctcagggg
     1441 aagttcagaa tggcaagatg tccaccaatg gtgtgtccaa cggtgtgtcc aatggcctgc
     1501 accttcacag caacggcttc cggctgccag agagtagagg acatgtcagc ccccaggtag
     1561 agctgccccc atacctggag cgtgtgaaac agcaagccaa tgaggctttt gcctgccagc
     1621 agtggaccca ggccatccag ctttacagca aggccgtgca gagggcccct cacaacgcca
     1681 tgctctacgg gaaccgagct gctgcctaca tgaagcgcaa gtgggatggt gaccactacg
     1741 atgctctgag ggactgcctc aaggccatct ccctaaaccc atgccatctg aaggcgcact
     1801 tccgcctggc ccgatgcctc tttgagctca agtacgtggc tgaggccctg gagtgcctgg
     1861 atgatttcaa agggaagttc ccggagcagg cccatagcag cgcttgtgat gcactgggac
     1921 gcgacatcac ggccgccctc ttctccaaaa atgatggtga cgagaagaag ggagctggtg
     1981 gtggtggcag cggccccgtc cgcctccgca gcacgagccg caaggactcc atctcagagg
     2041 acgagatggt gctgcgggag cgaagctacg actatcagtt ccgctactgt ggccactgca
     2101 ataccaccac agacatcaag gaggccaatt tctttggcag caacgctcaa tacatcgtca
     2161 gtggctctga tgatggctcc ttcttcatct gggaaaagga gaccaccaac ctggtccgcg
     2221 tgctccaggg ggacgagtcc atcgtcaact gcctgcagcc gcaccccagc tactgcttct
     2281 tggccaccag cggcatcgac cccgttgtgc ggctgtggaa cccccggcca gagagtgaag
     2341 acctcacagg ccgagttgtg gaggacatgg agggtgcttc ccaggccaac cagcggcgca
     2401 tgaatgcgga cccgttggag gtgatgctgc tcaacatggg ctatcggatc acaggcctga
     2461 gcagtgcggg tgctggggcc tctgacgatg aggacagctc cgagggccag gtgcagtgcc
     2521 ggcccagcta ggccctccta gccctggtcc ccagcccctg ctaccggctg ggtcctccgc
     2581 ccctgggcag gaggtcaggg ggttctgttt tggtttgtct tccccttccc cccatttttt
     2641 ccttttccct gttttgttag tttggcattg ggggtgggga ttgctacaac ttgctggctt
     2701 ttggactttt gggcaattgc ccctcgactg gccccagccc tgagcagaag agcaggagaa
     2761 gcccctccat aggcccacca ccaccttgca cttccgtgtc cctggagggc tccggcctgc
     2821 ctcgagtggg gaggcaaggg ctcaagctgt cttcaaggac tgccctaccc ttcagttggc
     2881 agcagaaagg ggagtggaat tcccagtcca taagggctag ccgtgacctg ttaccattct
     2941 tgcttctggt gggcaaggct agctccctcc tggtcttcag ggaaggttct gaaaaagcat
     3001 agggtgcccc cttccttgca gagccattct gtcagggtgg aaacagaagt aaggatggga
     3061 gccctggagg ggcaaggtca agccactgct tacttgcagt acagcatccc tgccctcctc
     3121 ccaggcactg gctctgggtc ctgaacctgc cctcactggc cacccctgga ggcttagcct
     3181 ttcccaaggg ccctggcagt gtgggtgggg caccacacca ttccccaccc atctgtgcca
     3241 gcccttctgc actctggagg gccactcttc cttcgggcgc tcttcagcct cactgtgacc
     3301 tttctgccag agctcccagc caggcctcct cttgctgaga tggcactccc tgctaggagc
     3361 cttccaggcc ctccgtgccc tccctcccat cccacatgct gagccgccac aaagaccaaa
     3421 gaagtgatgg cttttctctg tcccctgctg ctctgggggg agggggtggg tctcctgagc
     3481 cactcggatg gggaagtccc taactcagcc cccctccctc ctcagcagcc tgagctttac
     3541 actggatgca gcggtcaccc caccactcac cagacctccc tctttgcccc cttggctctc
     3601 agctcaggag ctgctcccgt agttggttca tccttcctcc cctctccctc ttcactcccc
     3661 tcagggctca cttggctcca gccctccagc tgcagcctct ggggagaagc agcctccctc
     3721 gctccctccc tccctccctc cctccaccct gactctgcca ggtgcctcct ctcggccagg
     3781 cttcagaaaa gccctgtaga cagcagggcc atgttaaaag ctttttcaca gttttgagaa
     3841 gatgaggggt gggagtgggg ggtggtgagg atagtggtgg gggtctggca ccatctcgtc
     3901 attgctttaa tcccagcaac acaggtggca gcctctcgcc cttcctctcc ccccgtccct
     3961 cttcccaccc ctctcttcta gcttggtaat gaagtatatt tattggtgaa ggaaacagct
     4021 gctgctgctt ctcctgctgc tgggacttgc tcccctgtct cttctccacg acctttctcc
     4081 agccgggagg ggagagcggg agtactgggg ctgggccctg gggcccaagg actagcaggg
     4141 gcccctttgc tttcctgtgt tcgagccacc cgccatttcc tctgtccctg cctcctgcct
     4201 gcccagcctg ggccctgccg tgtggagaga cacataagcc ttactgtcct ctgggggcag
     4261 gagccgagcc tttttgttgc tccgctccca ggagagtgag ggtgacgcaa ttgattaaaa
     4321 ccattttgtt ctagg
//
LOCUS       XM_032647336            4329 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD and tetratricopeptide repeats 1
            (WDTC1), transcript variant X2, mRNA.
ACCESSION   XM_032647336
VERSION     XM_032647336.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4329
                     /gene="WDTC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 4 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761518"
     CDS             486..2525
                     /gene="WDTC1"
                     /codon_start=1
                     /product="WD and tetratricopeptide repeats protein 1
                     isoform X2"
                     /protein_id="XP_032503227.1"
                     /db_xref="GeneID:116761518"
                     /translation="MAKVNITRDLICRQIKERGALSFERRYHVTDPFIRRLGLEAELQ
                     GHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKFLPHA
                     GDRILITGAADSKVHVHDLTVKETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLIR
                     QYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIH
                     NHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTF
                     SPNGTELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVSN
                     GLHLHSNGFRLPESRGHVSPQVELPPYLERVKQQANEAFACQQWTQAIQLYSKAVQRA
                     PHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVA
                     EALECLDDFKGKFPEQAHSSACDALGRDITAALFSKNDGDEKKGAGGGGSGPVRLRST
                     SRKDSISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFI
                     WEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRPESEDLTGRVVE
                     DMEGASQANQRRMNADPLEVMLLNMGYRITGLSSAGAGASDDEDSSEGQVQCRPS"
     misc_feature    <600..1130
                     /gene="WDTC1"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    636..749
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    762..878
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    897..1019
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1179..1298
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1560..>1889
                     /gene="WDTC1"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; Region: Spy; COG3914"
                     /db_xref="CDD:443119"
     misc_feature    order(1581..1586,1593..1598,1602..1604,1674..1676,
                     1683..1688,1695..1700,1704..1709,1785..1787,1794..1799,
                     1806..1811,1818..1820)
                     /gene="WDTC1"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    1581..1655
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1668..1769
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1782..1856
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    2100..2222
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <2127..>2369
                     /gene="WDTC1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
ORIGIN      
        1 tagcgtagcc gctggctgtg aggcgcgggg cgggggcgga gactgcgtgg cgcaggcgcg
       61 gtgctgggct tctcctgggt ccccagacag ctggaggaga taaacagagg aggaggaggg
      121 aggggagtgc gtgtgtgaga gcgcgcgagg gagtgtgagt gtgtgtgagc gcgggtgtga
      181 ggcggtgcgc aggggcgggc ggaggcgctg tccggccccg gccaggcgcc aggcagggag
      241 catgggaagg ggctagagct gcccgggccc tccagccccc tccccgggat ccgcgccccc
      301 cctccgggga gaggggccgg gccccccgga cggacatggg ctcctgaagt tgcgccgcca
      361 ccggtcctgg gaagaggcct gacaggtaat taaatgtgtg tcttgtggac ctgggcttgg
      421 ctggaatgct caagggtcct gaagatcctt ctatagcttc cttctgttga atccattaag
      481 agaagatggc aaaagtcaac ataactagag acctcatctg taggcagata aaggagcggg
      541 gtgccctgag ctttgagcgg cgctaccatg tcactgaccc ctttatcaga cggctgggcc
      601 tggaagcaga gctgcagggt cactcaggat gtgtcaactg tctggagtgg aatgagaaag
      661 gagacttgct ggcctctggt tctgatgacc agcacacgat tgtgtgggac ccgctgcacc
      721 ataagaagct gctttccatg cacacaggac acactgcaaa tatcttttct gtcaagttcc
      781 tgcctcacgc tggggaccgc atcttgatca caggggcagc tgactccaag gtgcatgtcc
      841 acgacctgac agtaaaggag acgatccaca tgtttggaga ccacacaaac cgggtgaaac
      901 gcatcgccac ggcgcccatg tggcccaaca cattctggag cgctgctgag gatgggctta
      961 tccgccagta tgaccttcgg gagaacagca aacactcgga ggtgctgatt gacctgacag
     1021 agtactgtgg ccagctggta gaggccaagt gcctcaccgt caacccccag gacaacaact
     1081 gcctggcagt gggggccagc gggccctttg tgaggctcta tgacattcgc atgatccata
     1141 accacagaaa gagcatgaag cagagccctt cagcaggtgt gcacaccttc tgtgaccggc
     1201 agaagcccct tccggatggt gcagcccagt attacgtagc aggtcacctg ccagtgaagc
     1261 tgcccgacta caacaaccgt ctgagagtgc tggtcgccac ctatgtgacc ttcagcccca
     1321 atggcacgga gctgctggtc aacatgggag gagagcaggt ctatttgttt gacctgactt
     1381 acaagcagcg gccgtacacc ttcctcttgc ctagaaaatg ccactcctca ggggaagttc
     1441 agaatggcaa gatgtccacc aatggtgtgt ccaacggtgt gtccaatggc ctgcaccttc
     1501 acagcaacgg cttccggctg ccagagagta gaggacatgt cagcccccag gtagagctgc
     1561 ccccatacct ggagcgtgtg aaacagcaag ccaatgaggc ttttgcctgc cagcagtgga
     1621 cccaggccat ccagctttac agcaaggccg tgcagagggc ccctcacaac gccatgctct
     1681 acgggaaccg agctgctgcc tacatgaagc gcaagtggga tggtgaccac tacgatgctc
     1741 tgagggactg cctcaaggcc atctccctaa acccatgcca tctgaaggcg cacttccgcc
     1801 tggcccgatg cctctttgag ctcaagtacg tggctgaggc cctggagtgc ctggatgatt
     1861 tcaaagggaa gttcccggag caggcccata gcagcgcttg tgatgcactg ggacgcgaca
     1921 tcacggccgc cctcttctcc aaaaatgatg gtgacgagaa gaagggagct ggtggtggtg
     1981 gcagcggccc cgtccgcctc cgcagcacga gccgcaagga ctccatctca gaggacgaga
     2041 tggtgctgcg ggagcgaagc tacgactatc agttccgcta ctgtggccac tgcaatacca
     2101 ccacagacat caaggaggcc aatttctttg gcagcaacgc tcaatacatc gtcagtggct
     2161 ctgatgatgg ctccttcttc atctgggaaa aggagaccac caacctggtc cgcgtgctcc
     2221 agggggacga gtccatcgtc aactgcctgc agccgcaccc cagctactgc ttcttggcca
     2281 ccagcggcat cgaccccgtt gtgcggctgt ggaacccccg gccagagagt gaagacctca
     2341 caggccgagt tgtggaggac atggagggtg cttcccaggc caaccagcgg cgcatgaatg
     2401 cggacccgtt ggaggtgatg ctgctcaaca tgggctatcg gatcacaggc ctgagcagtg
     2461 cgggtgctgg ggcctctgac gatgaggaca gctccgaggg ccaggtgcag tgccggccca
     2521 gctaggccct cctagccctg gtccccagcc cctgctaccg gctgggtcct ccgcccctgg
     2581 gcaggaggtc agggggttct gttttggttt gtcttcccct tccccccatt ttttcctttt
     2641 ccctgttttg ttagtttggc attgggggtg gggattgcta caacttgctg gcttttggac
     2701 ttttgggcaa ttgcccctcg actggcccca gccctgagca gaagagcagg agaagcccct
     2761 ccataggccc accaccacct tgcacttccg tgtccctgga gggctccggc ctgcctcgag
     2821 tggggaggca agggctcaag ctgtcttcaa ggactgccct acccttcagt tggcagcaga
     2881 aaggggagtg gaattcccag tccataaggg ctagccgtga cctgttacca ttcttgcttc
     2941 tggtgggcaa ggctagctcc ctcctggtct tcagggaagg ttctgaaaaa gcatagggtg
     3001 cccccttcct tgcagagcca ttctgtcagg gtggaaacag aagtaaggat gggagccctg
     3061 gaggggcaag gtcaagccac tgcttacttg cagtacagca tccctgccct cctcccaggc
     3121 actggctctg ggtcctgaac ctgccctcac tggccacccc tggaggctta gcctttccca
     3181 agggccctgg cagtgtgggt ggggcaccac accattcccc acccatctgt gccagccctt
     3241 ctgcactctg gagggccact cttccttcgg gcgctcttca gcctcactgt gacctttctg
     3301 ccagagctcc cagccaggcc tcctcttgct gagatggcac tccctgctag gagccttcca
     3361 ggccctccgt gccctccctc ccatcccaca tgctgagccg ccacaaagac caaagaagtg
     3421 atggcttttc tctgtcccct gctgctctgg ggggaggggg tgggtctcct gagccactcg
     3481 gatggggaag tccctaactc agcccccctc cctcctcagc agcctgagct ttacactgga
     3541 tgcagcggtc accccaccac tcaccagacc tccctctttg cccccttggc tctcagctca
     3601 ggagctgctc ccgtagttgg ttcatccttc ctcccctctc cctcttcact cccctcaggg
     3661 ctcacttggc tccagccctc cagctgcagc ctctggggag aagcagcctc cctcgctccc
     3721 tccctccctc cctccctcca ccctgactct gccaggtgcc tcctctcggc caggcttcag
     3781 aaaagccctg tagacagcag ggccatgtta aaagcttttt cacagttttg agaagatgag
     3841 gggtgggagt ggggggtggt gaggatagtg gtgggggtct ggcaccatct cgtcattgct
     3901 ttaatcccag caacacaggt ggcagcctct cgcccttcct ctccccccgt ccctcttccc
     3961 acccctctct tctagcttgg taatgaagta tatttattgg tgaaggaaac agctgctgct
     4021 gcttctcctg ctgctgggac ttgctcccct gtctcttctc cacgaccttt ctccagccgg
     4081 gaggggagag cgggagtact ggggctgggc cctggggccc aaggactagc aggggcccct
     4141 ttgctttcct gtgttcgagc cacccgccat ttcctctgtc cctgcctcct gcctgcccag
     4201 cctgggccct gccgtgtgga gagacacata agccttactg tcctctgggg gcaggagccg
     4261 agcctttttg ttgctccgct cccaggagag tgagggtgac gcaattgatt aaaaccattt
     4321 tgttctagg
//
LOCUS       XM_032647343            4334 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD and tetratricopeptide repeats 1
            (WDTC1), transcript variant X3, mRNA.
ACCESSION   XM_032647343
VERSION     XM_032647343.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4334
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4334
                     /gene="WDTC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761518"
     CDS             491..2530
                     /gene="WDTC1"
                     /codon_start=1
                     /product="WD and tetratricopeptide repeats protein 1
                     isoform X3"
                     /protein_id="XP_032503234.1"
                     /db_xref="GeneID:116761518"
                     /translation="MAKVNITRDLICRQIKERGALSFERRYHVTDPFIRRLGLEAELQ
                     GHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKQFLPH
                     AGDRILITGAADSKVHVHDLTVKETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLI
                     RQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMI
                     HNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVT
                     FSPNGTELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSSGVQNGKMSTNGVSNGVSN
                     GLHLHSNGFRLPESRGHVSPQVELPPYLERVKQQANEAFACQQWTQAIQLYSKAVQRA
                     PHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVA
                     EALECLDDFKGKFPEQAHSSACDALGRDITAALFSKNDGDEKKGAGGGGSGPVRLRST
                     SRKDSISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFI
                     WEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRPESEDLTGRVVE
                     DMEGASQANQRRMNADPLEVMLLNMGYRITGLSSAGAGASDDEDSSEGQVQCRPS"
     misc_feature    <605..1138
                     /gene="WDTC1"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    641..754
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    767..886
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    905..1027
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1187..1306
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1565..>1894
                     /gene="WDTC1"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; Region: Spy; COG3914"
                     /db_xref="CDD:443119"
     misc_feature    order(1586..1591,1598..1603,1607..1609,1679..1681,
                     1688..1693,1700..1705,1709..1714,1790..1792,1799..1804,
                     1811..1816,1823..1825)
                     /gene="WDTC1"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    1586..1660
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1673..1774
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1787..1861
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    2105..2227
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <2132..>2374
                     /gene="WDTC1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
ORIGIN      
        1 ctctgtagcg tagccgctgg ctgtgaggcg cggggcgggg gcggagactg cgtggcgcag
       61 gcgcggtgct gggcttctcc tgggtcccca gacagctgga ggagataaac agaggaggag
      121 gagggagggg agtgcgtgtg tgagagcgcg cgagggagtg tgagtgtgtg tgagcgcggg
      181 tgtgaggcgg tgcgcagggg cgggcggagg cgctgtccgg ccccggccag gcgccaggca
      241 gggagcatgg gaaggggcta gagctgcccg ggccctccag ccccctcccc gggatccgcg
      301 ccccccctcc ggggagaggg gccgggcccc ccggacggac atgggctcct gaagttgcgc
      361 cgccaccggt cctgggaaga ggcctgacag gtaattaaat gtgtgtcttg tggacctggg
      421 cttggctgga atgctcaagg gtcctgaaga tccttctata gcttccttct gttgaatcca
      481 ttaagagaag atggcaaaag tcaacataac tagagacctc atctgtaggc agataaagga
      541 gcggggtgcc ctgagctttg agcggcgcta ccatgtcact gaccccttta tcagacggct
      601 gggcctggaa gcagagctgc agggtcactc aggatgtgtc aactgtctgg agtggaatga
      661 gaaaggagac ttgctggcct ctggttctga tgaccagcac acgattgtgt gggacccgct
      721 gcaccataag aagctgcttt ccatgcacac aggacacact gcaaatatct tttctgtcaa
      781 gcagttcctg cctcacgctg gggaccgcat cttgatcaca ggggcagctg actccaaggt
      841 gcatgtccac gacctgacag taaaggagac gatccacatg tttggagacc acacaaaccg
      901 ggtgaaacgc atcgccacgg cgcccatgtg gcccaacaca ttctggagcg ctgctgagga
      961 tgggcttatc cgccagtatg accttcggga gaacagcaaa cactcggagg tgctgattga
     1021 cctgacagag tactgtggcc agctggtaga ggccaagtgc ctcaccgtca acccccagga
     1081 caacaactgc ctggcagtgg gggccagcgg gccctttgtg aggctctatg acattcgcat
     1141 gatccataac cacagaaaga gcatgaagca gagcccttca gcaggtgtgc acaccttctg
     1201 tgaccggcag aagccccttc cggatggtgc agcccagtat tacgtagcag gtcacctgcc
     1261 agtgaagctg cccgactaca acaaccgtct gagagtgctg gtcgccacct atgtgacctt
     1321 cagccccaat ggcacggagc tgctggtcaa catgggagga gagcaggtct atttgtttga
     1381 cctgacttac aagcagcggc cgtacacctt cctcttgcct agaaaatgcc actcctcagg
     1441 ggttcagaat ggcaagatgt ccaccaatgg tgtgtccaac ggtgtgtcca atggcctgca
     1501 ccttcacagc aacggcttcc ggctgccaga gagtagagga catgtcagcc cccaggtaga
     1561 gctgccccca tacctggagc gtgtgaaaca gcaagccaat gaggcttttg cctgccagca
     1621 gtggacccag gccatccagc tttacagcaa ggccgtgcag agggcccctc acaacgccat
     1681 gctctacggg aaccgagctg ctgcctacat gaagcgcaag tgggatggtg accactacga
     1741 tgctctgagg gactgcctca aggccatctc cctaaaccca tgccatctga aggcgcactt
     1801 ccgcctggcc cgatgcctct ttgagctcaa gtacgtggct gaggccctgg agtgcctgga
     1861 tgatttcaaa gggaagttcc cggagcaggc ccatagcagc gcttgtgatg cactgggacg
     1921 cgacatcacg gccgccctct tctccaaaaa tgatggtgac gagaagaagg gagctggtgg
     1981 tggtggcagc ggccccgtcc gcctccgcag cacgagccgc aaggactcca tctcagagga
     2041 cgagatggtg ctgcgggagc gaagctacga ctatcagttc cgctactgtg gccactgcaa
     2101 taccaccaca gacatcaagg aggccaattt ctttggcagc aacgctcaat acatcgtcag
     2161 tggctctgat gatggctcct tcttcatctg ggaaaaggag accaccaacc tggtccgcgt
     2221 gctccagggg gacgagtcca tcgtcaactg cctgcagccg caccccagct actgcttctt
     2281 ggccaccagc ggcatcgacc ccgttgtgcg gctgtggaac ccccggccag agagtgaaga
     2341 cctcacaggc cgagttgtgg aggacatgga gggtgcttcc caggccaacc agcggcgcat
     2401 gaatgcggac ccgttggagg tgatgctgct caacatgggc tatcggatca caggcctgag
     2461 cagtgcgggt gctggggcct ctgacgatga ggacagctcc gagggccagg tgcagtgccg
     2521 gcccagctag gccctcctag ccctggtccc cagcccctgc taccggctgg gtcctccgcc
     2581 cctgggcagg aggtcagggg gttctgtttt ggtttgtctt ccccttcccc ccattttttc
     2641 cttttccctg ttttgttagt ttggcattgg gggtggggat tgctacaact tgctggcttt
     2701 tggacttttg ggcaattgcc cctcgactgg ccccagccct gagcagaaga gcaggagaag
     2761 cccctccata ggcccaccac caccttgcac ttccgtgtcc ctggagggct ccggcctgcc
     2821 tcgagtgggg aggcaagggc tcaagctgtc ttcaaggact gccctaccct tcagttggca
     2881 gcagaaaggg gagtggaatt cccagtccat aagggctagc cgtgacctgt taccattctt
     2941 gcttctggtg ggcaaggcta gctccctcct ggtcttcagg gaaggttctg aaaaagcata
     3001 gggtgccccc ttccttgcag agccattctg tcagggtgga aacagaagta aggatgggag
     3061 ccctggaggg gcaaggtcaa gccactgctt acttgcagta cagcatccct gccctcctcc
     3121 caggcactgg ctctgggtcc tgaacctgcc ctcactggcc acccctggag gcttagcctt
     3181 tcccaagggc cctggcagtg tgggtggggc accacaccat tccccaccca tctgtgccag
     3241 cccttctgca ctctggaggg ccactcttcc ttcgggcgct cttcagcctc actgtgacct
     3301 ttctgccaga gctcccagcc aggcctcctc ttgctgagat ggcactccct gctaggagcc
     3361 ttccaggccc tccgtgccct ccctcccatc ccacatgctg agccgccaca aagaccaaag
     3421 aagtgatggc ttttctctgt cccctgctgc tctgggggga gggggtgggt ctcctgagcc
     3481 actcggatgg ggaagtccct aactcagccc ccctccctcc tcagcagcct gagctttaca
     3541 ctggatgcag cggtcacccc accactcacc agacctccct ctttgccccc ttggctctca
     3601 gctcaggagc tgctcccgta gttggttcat ccttcctccc ctctccctct tcactcccct
     3661 cagggctcac ttggctccag ccctccagct gcagcctctg gggagaagca gcctccctcg
     3721 ctccctccct ccctccctcc ctccaccctg actctgccag gtgcctcctc tcggccaggc
     3781 ttcagaaaag ccctgtagac agcagggcca tgttaaaagc tttttcacag ttttgagaag
     3841 atgaggggtg ggagtggggg gtggtgagga tagtggtggg ggtctggcac catctcgtca
     3901 ttgctttaat cccagcaaca caggtggcag cctctcgccc ttcctctccc cccgtccctc
     3961 ttcccacccc tctcttctag cttggtaatg aagtatattt attggtgaag gaaacagctg
     4021 ctgctgcttc tcctgctgct gggacttgct cccctgtctc ttctccacga cctttctcca
     4081 gccgggaggg gagagcggga gtactggggc tgggccctgg ggcccaagga ctagcagggg
     4141 cccctttgct ttcctgtgtt cgagccaccc gccatttcct ctgtccctgc ctcctgcctg
     4201 cccagcctgg gccctgccgt gtggagagac acataagcct tactgtcctc tgggggcagg
     4261 agccgagcct ttttgttgct ccgctcccag gagagtgagg gtgacgcaat tgattaaaac
     4321 cattttgttc tagg
//
LOCUS       XM_032647351            4328 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD and tetratricopeptide repeats 1
            (WDTC1), transcript variant X4, mRNA.
ACCESSION   XM_032647351
VERSION     XM_032647351.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4328
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4328
                     /gene="WDTC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761518"
     CDS             488..2524
                     /gene="WDTC1"
                     /codon_start=1
                     /product="WD and tetratricopeptide repeats protein 1
                     isoform X4"
                     /protein_id="XP_032503242.1"
                     /db_xref="GeneID:116761518"
                     /translation="MAKVNITRDLICRQIKERGALSFERRYHVTDPFIRRLGLEAELQ
                     GHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKFLPHA
                     GDRILITGAADSKVHVHDLTVKETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLIR
                     QYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIH
                     NHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTF
                     SPNGTELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSSGVQNGKMSTNGVSNGVSNG
                     LHLHSNGFRLPESRGHVSPQVELPPYLERVKQQANEAFACQQWTQAIQLYSKAVQRAP
                     HNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAE
                     ALECLDDFKGKFPEQAHSSACDALGRDITAALFSKNDGDEKKGAGGGGSGPVRLRSTS
                     RKDSISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIW
                     EKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRPESEDLTGRVVED
                     MEGASQANQRRMNADPLEVMLLNMGYRITGLSSAGAGASDDEDSSEGQVQCRPS"
     misc_feature    <602..1132
                     /gene="WDTC1"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    638..751
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    764..880
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    899..1021
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1181..1300
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1559..>1888
                     /gene="WDTC1"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; Region: Spy; COG3914"
                     /db_xref="CDD:443119"
     misc_feature    order(1580..1585,1592..1597,1601..1603,1673..1675,
                     1682..1687,1694..1699,1703..1708,1784..1786,1793..1798,
                     1805..1810,1817..1819)
                     /gene="WDTC1"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    1580..1654
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1667..1768
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1781..1855
                     /gene="WDTC1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    2099..2221
                     /gene="WDTC1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <2126..>2368
                     /gene="WDTC1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
ORIGIN      
        1 tgtagcgtag ccgctggctg tgaggcgcgg ggcgggggcg gagactgcgt ggcgcaggcg
       61 cggtgctggg cttctcctgg gtccccagac agctggagga gataaacaga ggaggaggag
      121 ggaggggagt gcgtgtgtga gagcgcgcga gggagtgtga gtgtgtgtga gcgcgggtgt
      181 gaggcggtgc gcaggggcgg gcggaggcgc tgtccggccc cggccaggcg ccaggcaggg
      241 agcatgggaa ggggctagag ctgcccgggc cctccagccc cctccccggg atccgcgccc
      301 cccctccggg gagaggggcc gggccccccg gacggacatg ggctcctgaa gttgcgccgc
      361 caccggtcct gggaagaggc ctgacaggta attaaatgtg tgtcttgtgg acctgggctt
      421 ggctggaatg ctcaagggtc ctgaagatcc ttctatagct tccttctgtt gaatccatta
      481 agagaagatg gcaaaagtca acataactag agacctcatc tgtaggcaga taaaggagcg
      541 gggtgccctg agctttgagc ggcgctacca tgtcactgac ccctttatca gacggctggg
      601 cctggaagca gagctgcagg gtcactcagg atgtgtcaac tgtctggagt ggaatgagaa
      661 aggagacttg ctggcctctg gttctgatga ccagcacacg attgtgtggg acccgctgca
      721 ccataagaag ctgctttcca tgcacacagg acacactgca aatatctttt ctgtcaagtt
      781 cctgcctcac gctggggacc gcatcttgat cacaggggca gctgactcca aggtgcatgt
      841 ccacgacctg acagtaaagg agacgatcca catgtttgga gaccacacaa accgggtgaa
      901 acgcatcgcc acggcgccca tgtggcccaa cacattctgg agcgctgctg aggatgggct
      961 tatccgccag tatgaccttc gggagaacag caaacactcg gaggtgctga ttgacctgac
     1021 agagtactgt ggccagctgg tagaggccaa gtgcctcacc gtcaaccccc aggacaacaa
     1081 ctgcctggca gtgggggcca gcgggccctt tgtgaggctc tatgacattc gcatgatcca
     1141 taaccacaga aagagcatga agcagagccc ttcagcaggt gtgcacacct tctgtgaccg
     1201 gcagaagccc cttccggatg gtgcagccca gtattacgta gcaggtcacc tgccagtgaa
     1261 gctgcccgac tacaacaacc gtctgagagt gctggtcgcc acctatgtga ccttcagccc
     1321 caatggcacg gagctgctgg tcaacatggg aggagagcag gtctatttgt ttgacctgac
     1381 ttacaagcag cggccgtaca ccttcctctt gcctagaaaa tgccactcct caggggttca
     1441 gaatggcaag atgtccacca atggtgtgtc caacggtgtg tccaatggcc tgcaccttca
     1501 cagcaacggc ttccggctgc cagagagtag aggacatgtc agcccccagg tagagctgcc
     1561 cccatacctg gagcgtgtga aacagcaagc caatgaggct tttgcctgcc agcagtggac
     1621 ccaggccatc cagctttaca gcaaggccgt gcagagggcc cctcacaacg ccatgctcta
     1681 cgggaaccga gctgctgcct acatgaagcg caagtgggat ggtgaccact acgatgctct
     1741 gagggactgc ctcaaggcca tctccctaaa cccatgccat ctgaaggcgc acttccgcct
     1801 ggcccgatgc ctctttgagc tcaagtacgt ggctgaggcc ctggagtgcc tggatgattt
     1861 caaagggaag ttcccggagc aggcccatag cagcgcttgt gatgcactgg gacgcgacat
     1921 cacggccgcc ctcttctcca aaaatgatgg tgacgagaag aagggagctg gtggtggtgg
     1981 cagcggcccc gtccgcctcc gcagcacgag ccgcaaggac tccatctcag aggacgagat
     2041 ggtgctgcgg gagcgaagct acgactatca gttccgctac tgtggccact gcaataccac
     2101 cacagacatc aaggaggcca atttctttgg cagcaacgct caatacatcg tcagtggctc
     2161 tgatgatggc tccttcttca tctgggaaaa ggagaccacc aacctggtcc gcgtgctcca
     2221 gggggacgag tccatcgtca actgcctgca gccgcacccc agctactgct tcttggccac
     2281 cagcggcatc gaccccgttg tgcggctgtg gaacccccgg ccagagagtg aagacctcac
     2341 aggccgagtt gtggaggaca tggagggtgc ttcccaggcc aaccagcggc gcatgaatgc
     2401 ggacccgttg gaggtgatgc tgctcaacat gggctatcgg atcacaggcc tgagcagtgc
     2461 gggtgctggg gcctctgacg atgaggacag ctccgagggc caggtgcagt gccggcccag
     2521 ctaggccctc ctagccctgg tccccagccc ctgctaccgg ctgggtcctc cgcccctggg
     2581 caggaggtca gggggttctg ttttggtttg tcttcccctt ccccccattt tttccttttc
     2641 cctgttttgt tagtttggca ttgggggtgg ggattgctac aacttgctgg cttttggact
     2701 tttgggcaat tgcccctcga ctggccccag ccctgagcag aagagcagga gaagcccctc
     2761 cataggccca ccaccacctt gcacttccgt gtccctggag ggctccggcc tgcctcgagt
     2821 ggggaggcaa gggctcaagc tgtcttcaag gactgcccta cccttcagtt ggcagcagaa
     2881 aggggagtgg aattcccagt ccataagggc tagccgtgac ctgttaccat tcttgcttct
     2941 ggtgggcaag gctagctccc tcctggtctt cagggaaggt tctgaaaaag catagggtgc
     3001 ccccttcctt gcagagccat tctgtcaggg tggaaacaga agtaaggatg ggagccctgg
     3061 aggggcaagg tcaagccact gcttacttgc agtacagcat ccctgccctc ctcccaggca
     3121 ctggctctgg gtcctgaacc tgccctcact ggccacccct ggaggcttag cctttcccaa
     3181 gggccctggc agtgtgggtg gggcaccaca ccattcccca cccatctgtg ccagcccttc
     3241 tgcactctgg agggccactc ttccttcggg cgctcttcag cctcactgtg acctttctgc
     3301 cagagctccc agccaggcct cctcttgctg agatggcact ccctgctagg agccttccag
     3361 gccctccgtg ccctccctcc catcccacat gctgagccgc cacaaagacc aaagaagtga
     3421 tggcttttct ctgtcccctg ctgctctggg gggagggggt gggtctcctg agccactcgg
     3481 atggggaagt ccctaactca gcccccctcc ctcctcagca gcctgagctt tacactggat
     3541 gcagcggtca ccccaccact caccagacct ccctctttgc ccccttggct ctcagctcag
     3601 gagctgctcc cgtagttggt tcatccttcc tcccctctcc ctcttcactc ccctcagggc
     3661 tcacttggct ccagccctcc agctgcagcc tctggggaga agcagcctcc ctcgctccct
     3721 ccctccctcc ctccctccac cctgactctg ccaggtgcct cctctcggcc aggcttcaga
     3781 aaagccctgt agacagcagg gccatgttaa aagctttttc acagttttga gaagatgagg
     3841 ggtgggagtg gggggtggtg aggatagtgg tgggggtctg gcaccatctc gtcattgctt
     3901 taatcccagc aacacaggtg gcagcctctc gcccttcctc tccccccgtc cctcttccca
     3961 cccctctctt ctagcttggt aatgaagtat atttattggt gaaggaaaca gctgctgctg
     4021 cttctcctgc tgctgggact tgctcccctg tctcttctcc acgacctttc tccagccggg
     4081 aggggagagc gggagtactg gggctgggcc ctggggccca aggactagca ggggcccctt
     4141 tgctttcctg tgttcgagcc acccgccatt tcctctgtcc ctgcctcctg cctgcccagc
     4201 ctgggccctg ccgtgtggag agacacataa gccttactgt cctctggggg caggagccga
     4261 gcctttttgt tgctccgctc ccaggagagt gagggtgacg caattgatta aaaccatttt
     4321 gttctagg
//
LOCUS       XM_032647364            3914 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane and coiled-coil domain
            family 2 (TMCC2), transcript variant X1, mRNA.
ACCESSION   XM_032647364
VERSION     XM_032647364.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3914
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3914
                     /gene="TMCC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 25
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761534"
     CDS             627..2753
                     /gene="TMCC2"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domains protein 2
                     isoform X1"
                     /protein_id="XP_032503255.1"
                     /db_xref="GeneID:116761534"
                     /translation="MKRCKSDELQQQQGEEDGAGLEDAACHLPGADLRPGEATGANSA
                     GGPTSDAGAAAAPNPGPRSKPPDLKKIQQLSEGSMFGHGFKHLFHGRRRSREREHPTS
                     QDSQQQHQQGMSDHDSPDEKERSPEMHRVSYAMSLHDLPARPTAFNRVLQQIRSRPSI
                     KRGASLHSSSGGGGSGGSSRRTKSSSLEPQRGSPHLLRKAPQDSSLAAILHQHQCRPR
                     SSSTTDTSLLLADGGNLLAEEAEGLSDKVDKGDLAALSLPGGPGHGDADGPISLDVPD
                     GAPDPQRTKAAIDHLHQKILKITEQIKIEQEARDDNVAEYLKLAHNADKQQVSRIKQV
                     FEKKNQKSAQTIAQLHKKLEHYRRRLKEIEQNGPSRQPKDVLRDMQQGLKDVGANMRA
                     GISGFGGGVVEGVKGSLSGLSQATHTAVVSKPREFASLIRNKFGSADNIAHLKDPLDD
                     GPPEEAARALSGSATLVSSPKYGSDDECSSASASSAGAGSNSGAGPAAALGSPKSNML
                     YGAPGNMDAVLEELREIKEGQSHLEDSMEDLKAQLQRDYTYMTQCLQEERYRYERLEE
                     QLNDLTELHQNEMTNLKQELASMEEKVAYQSYERARDIQEAVESCLTRVTKLELQQQQ
                     QQVVQLEGVENANARALLGKFINVILALMAVLLVFVSTLANFITPLMKTRLRITSTAL
                     LVLVLFLLWKHWDSLTYLLQHALLPS"
     misc_feature    1476..2708
                     /gene="TMCC2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     Region: Tmemb_cc2; pfam10267"
                     /db_xref="CDD:463036"
ORIGIN      
        1 gcgcgcttgc ctctggctct ggcggctgtc gaggctttgc agcaggcggc gcggagggcg
       61 gggagtgggt ctagcgcgcg cgcgcggggg aggggcgggg cgcggcgagc tgcgggctgc
      121 gctgccggcc agtgtggggc gggggctggc ggcagggctg ggggccgcag tcggcgccga
      181 gggctgcaga cgaggacctg cccggccggc cgcgccatgc ctgccgcgcc cagcagcccg
      241 gcccgccggg agggatgcga tgtgccgccc agctcccctc cgcccggccc ttgccctgaa
      301 gcagaaagtt tgggggctgg gggctatctc ctcccgctcc aatgactgcc caaggactcc
      361 tgctgcccag cctcgattgt gatctgtctc cgctccccag gtcgtaatga actattccaa
      421 gctgtaacca aggctcccct cctctcccct ctctcaccct cctttaaaaa ggtttatttt
      481 tttaattcaa gaaattgtga tccgccgact cccctcctcg ttaataatta gaccccgagc
      541 ctcgtttctg agtgtaagag ggggtgcggt ctcccccaag aaggcgcgct ggaaggacag
      601 attccccttg ccgacccaca tacaccatga agaggtgcaa atcggacgag ctgcagcaac
      661 aacagggtga ggaggatgga gctgggctgg aagatgcagc ttgccacctg ccgggcgcgg
      721 acctccggcc tggggaggcc acgggtgcta actctgctgg cgggccaact tcggatgcgg
      781 gcgctgccgc ggcgcccaac ccgggtcccc gaagcaagcc tcccgattta aagaaaatcc
      841 agcagctctc agagggctcc atgtttggcc acggcttcaa gcacctgttc cacggccgcc
      901 gccggtcacg ggagagggag cacccgacgt ctcaggattc ccagcagcag catcagcagg
      961 gcatgtccga ccatgactcc ccggacgaga aggagcgctc cccagagatg caccgcgtct
     1021 cctacgccat gtccctgcac gacctgcccg ccaggcccac tgccttcaac cgcgtgctgc
     1081 agcagatccg ctcccggccc tccatcaagc ggggtgctag cctgcacagc agcagtgggg
     1141 gtggtggcag cgggggcagt agccggcgca ccaagagcag ctccctggag cctcagcgtg
     1201 gcagccccca cctgctgcgc aaggcccccc aggacagcag cctggccgcc atcctgcacc
     1261 agcaccagtg ccgcccccgg tcttcttcca ccactgacac gtccctgctg ctggctgacg
     1321 gtggcaacct cttggccgag gaggccgagg gtctgagcga caaggtcgac aagggggacc
     1381 tcgcggccct gagcctccct ggcggccctg gccacggtga tgccgatggc cccatcagcc
     1441 tggacgtgcc ggacggggcc ccggaccccc agcggaccaa ggccgccatc gaccacctgc
     1501 accagaagat cctgaagatc acggagcaga tcaagatcga gcaggaggcg cgggacgaca
     1561 acgtggccga gtacctgaag ctggcccaca acgccgacaa gcagcaggtg tcccgcatca
     1621 agcaggtgtt cgagaagaag aaccagaagt cggcccagac catcgcccag ctgcacaaga
     1681 agctggagca ctaccgccgg cgcctgaagg agatcgagca gaacgggccg tcgcggcagc
     1741 ccaaggacgt gctgcgggac atgcagcagg gcctgaagga cgtgggcgcc aacatgcgcg
     1801 ccggcatcag cggcttcggg ggtggcgtgg tggagggcgt gaagggcagc ctctccggcc
     1861 tctcacaggc cacccacacc gccgtggtgt ccaagccccg ggagttcgcc agcctcatcc
     1921 ggaacaagtt tggcagcgct gacaacatcg cccacctgaa ggaccccctg gacgacgggc
     1981 cccccgagga ggcggcccgg gcgctgagcg gcagtgccac gctcgtgtcc agccccaagt
     2041 acggcagtga cgatgagtgc tccagcgcca gcgccagctc ggctggggcg ggcagcaact
     2101 cgggggccgg gcccgccgcg gcgctgggga gccccaagtc gaacatgctg tacggcgccc
     2161 ccggaaacat ggatgccgtg ctggaagagc tgcgggagat caaggagggc cagtcccacc
     2221 tggaggactc gatggaggac ctgaaggctc agctgcagag ggactacacc tacatgaccc
     2281 agtgcctgca ggaggagcgc tacagatatg agcggctgga ggagcagctc aacgacctga
     2341 ccgagcttca ccagaatgag atgaccaacc tgaagcagga gctggccagc atggaggaga
     2401 aggtggccta ccagtcctac gaaagggccc gggacatcca ggaggctgtg gagtcttgcc
     2461 tgacccgggt caccaagctg gagctgcagc agcaacagca gcaggtggtg cagctggagg
     2521 gcgtggagaa cgccaacgcg cgggcgctgc tgggcaagtt catcaacgtg atcctggcgc
     2581 tcatggccgt gctgctggtg ttcgtgtcca ctctcgccaa cttcatcaca ccactcatga
     2641 agacccgtct gcgcatcacc agcactgccc tcctggtcct cgtcctcttc ctcctctgga
     2701 agcactggga ctccctcacc tacctcctgc agcacgcact actgcccagc tgagcggccg
     2761 gcctgtcccg accccgtgct ctccccagcc cccagctggc catgcttctc cgggggaacc
     2821 ctgggactcc cgagtccttg gacttcatca tgtgtccagt ttggcctcct gcccaaactg
     2881 tccattccag cgacttctgc ccccttctct gtccttgctt cttctggcca gtgcctcctc
     2941 cctgttggcc tgaagggagc cgtaagtgta gccctggctg gaggcggtgg gggcgtcggt
     3001 ggccaaatgg agcagaggac acccggatgg actgttttga ttatttacag tcacacaagg
     3061 gctcctccca gctgacgcag atgccgtggg tcaggaaggc caatgagaag aggggcagga
     3121 gagggccatg cctcggcttt cctagggaag agcccatgct tcaggcagct ccggctccct
     3181 ctttgtggag atggtcagaa tgaaggcaag agcttccact ggccccgggg aagctcccca
     3241 gctcacccct ccctcctcca gagctgggtt gaggctgggt tctgggttgg gcccttctgg
     3301 gatctgaagg atgcaggctc tggaggccag ttaggtgtgg ctttggattt gtgtgttccc
     3361 tgttatcctt tctgcctgtc cctggatctg ctcttttcag ggaaagaggc cccaggggtc
     3421 ccaagcctca gcccaagctc ttagggttct gtttatttat ttatttattt gttcctttgt
     3481 cccttattcc cctgagctcc agggagaggt cccaccccca ccgccctctc cggtcctctc
     3541 tctgaagcca gggctgctgc ttggctgtca ggtacttcca cgccatttag atctggagac
     3601 tcctggctgg gggaagcggg gcagagccac ccagccccac tctcctaggc agcgcctcag
     3661 cctcttttat atgtctgttt attctgtatg tgtgtatttg tgtgggggag gttgtctgtt
     3721 gctttctttt ttttaaggct ctggagtgtt gtgtatggtt tctcttcaca tcccagcctc
     3781 cccaagggca cttccaagaa gagaggggat ttgtcggaaa aggagagaga aatcccctgg
     3841 aacaggggag ggcagtgcct gccagctgtt gtggaccttc ccgagaaata aatatcctct
     3901 aaattttcaa acca
//
LOCUS       XM_032647375            3034 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane and coiled-coil domain
            family 2 (TMCC2), transcript variant X2, mRNA.
ACCESSION   XM_032647375
VERSION     XM_032647375.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3034
                     /gene="TMCC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 18 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761534"
     CDS             284..1873
                     /gene="TMCC2"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domains protein 2
                     isoform X2"
                     /protein_id="XP_032503266.1"
                     /db_xref="GeneID:116761534"
                     /translation="MAGTPRPPAWALLPSACGLLLGLETLGTQPAGRWGCAPLPVLGD
                     RAGPGAPAIMKRKRLLTTPGSWKVDKGDLAALSLPGGPGHGDADGPISLDVPDGAPDP
                     QRTKAAIDHLHQKILKITEQIKIEQEARDDNVAEYLKLAHNADKQQVSRIKQVFEKKN
                     QKSAQTIAQLHKKLEHYRRRLKEIEQNGPSRQPKDVLRDMQQGLKDVGANMRAGISGF
                     GGGVVEGVKGSLSGLSQATHTAVVSKPREFASLIRNKFGSADNIAHLKDPLDDGPPEE
                     AARALSGSATLVSSPKYGSDDECSSASASSAGAGSNSGAGPAAALGSPKSNMLYGAPG
                     NMDAVLEELREIKEGQSHLEDSMEDLKAQLQRDYTYMTQCLQEERYRYERLEEQLNDL
                     TELHQNEMTNLKQELASMEEKVAYQSYERARDIQEAVESCLTRVTKLELQQQQQQVVQ
                     LEGVENANARALLGKFINVILALMAVLLVFVSTLANFITPLMKTRLRITSTALLVLVL
                     FLLWKHWDSLTYLLQHALLPS"
     misc_feature    596..1828
                     /gene="TMCC2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     Region: Tmemb_cc2; pfam10267"
                     /db_xref="CDD:463036"
ORIGIN      
        1 ataagacact gggactcggc tgtggacagc ggtccttcaa caggctgagg cgggtctggc
       61 cctgggagag tggggctcca ggcccgcctg ctttcatccg accttgcttc ccatctttcc
      121 tatcttctgt gacctttcct tcccctctct ccctgccccc tatcctctct cagtctctct
      181 gctccattct ctgtgccacc ctgatgcact caggaagcct gcctgcctgc gaggaaaagg
      241 cgctgtcctc tccctcctcc acattcacct ccttccacgc tggatggctg gtacccccag
      301 gcccccagcc tgggccctgc ttccctcagc ctgtgggtta cttctgggac tcgagacctt
      361 ggggacccag ccagcaggca ggtgggggtg tgctcctctc cctgtcctgg gagaccgggc
      421 agggccgggc gctcccgcca tcatgaagcg gaagaggttg ctgacgaccc cagggagctg
      481 gaaggtcgac aagggggacc tcgcggccct gagcctccct ggcggccctg gccacggtga
      541 tgccgatggc cccatcagcc tggacgtgcc ggacggggcc ccggaccccc agcggaccaa
      601 ggccgccatc gaccacctgc accagaagat cctgaagatc acggagcaga tcaagatcga
      661 gcaggaggcg cgggacgaca acgtggccga gtacctgaag ctggcccaca acgccgacaa
      721 gcagcaggtg tcccgcatca agcaggtgtt cgagaagaag aaccagaagt cggcccagac
      781 catcgcccag ctgcacaaga agctggagca ctaccgccgg cgcctgaagg agatcgagca
      841 gaacgggccg tcgcggcagc ccaaggacgt gctgcgggac atgcagcagg gcctgaagga
      901 cgtgggcgcc aacatgcgcg ccggcatcag cggcttcggg ggtggcgtgg tggagggcgt
      961 gaagggcagc ctctccggcc tctcacaggc cacccacacc gccgtggtgt ccaagccccg
     1021 ggagttcgcc agcctcatcc ggaacaagtt tggcagcgct gacaacatcg cccacctgaa
     1081 ggaccccctg gacgacgggc cccccgagga ggcggcccgg gcgctgagcg gcagtgccac
     1141 gctcgtgtcc agccccaagt acggcagtga cgatgagtgc tccagcgcca gcgccagctc
     1201 ggctggggcg ggcagcaact cgggggccgg gcccgccgcg gcgctgggga gccccaagtc
     1261 gaacatgctg tacggcgccc ccggaaacat ggatgccgtg ctggaagagc tgcgggagat
     1321 caaggagggc cagtcccacc tggaggactc gatggaggac ctgaaggctc agctgcagag
     1381 ggactacacc tacatgaccc agtgcctgca ggaggagcgc tacagatatg agcggctgga
     1441 ggagcagctc aacgacctga ccgagcttca ccagaatgag atgaccaacc tgaagcagga
     1501 gctggccagc atggaggaga aggtggccta ccagtcctac gaaagggccc gggacatcca
     1561 ggaggctgtg gagtcttgcc tgacccgggt caccaagctg gagctgcagc agcaacagca
     1621 gcaggtggtg cagctggagg gcgtggagaa cgccaacgcg cgggcgctgc tgggcaagtt
     1681 catcaacgtg atcctggcgc tcatggccgt gctgctggtg ttcgtgtcca ctctcgccaa
     1741 cttcatcaca ccactcatga agacccgtct gcgcatcacc agcactgccc tcctggtcct
     1801 cgtcctcttc ctcctctgga agcactggga ctccctcacc tacctcctgc agcacgcact
     1861 actgcccagc tgagcggccg gcctgtcccg accccgtgct ctccccagcc cccagctggc
     1921 catgcttctc cgggggaacc ctgggactcc cgagtccttg gacttcatca tgtgtccagt
     1981 ttggcctcct gcccaaactg tccattccag cgacttctgc ccccttctct gtccttgctt
     2041 cttctggcca gtgcctcctc cctgttggcc tgaagggagc cgtaagtgta gccctggctg
     2101 gaggcggtgg gggcgtcggt ggccaaatgg agcagaggac acccggatgg actgttttga
     2161 ttatttacag tcacacaagg gctcctccca gctgacgcag atgccgtggg tcaggaaggc
     2221 caatgagaag aggggcagga gagggccatg cctcggcttt cctagggaag agcccatgct
     2281 tcaggcagct ccggctccct ctttgtggag atggtcagaa tgaaggcaag agcttccact
     2341 ggccccgggg aagctcccca gctcacccct ccctcctcca gagctgggtt gaggctgggt
     2401 tctgggttgg gcccttctgg gatctgaagg atgcaggctc tggaggccag ttaggtgtgg
     2461 ctttggattt gtgtgttccc tgttatcctt tctgcctgtc cctggatctg ctcttttcag
     2521 ggaaagaggc cccaggggtc ccaagcctca gcccaagctc ttagggttct gtttatttat
     2581 ttatttattt gttcctttgt cccttattcc cctgagctcc agggagaggt cccaccccca
     2641 ccgccctctc cggtcctctc tctgaagcca gggctgctgc ttggctgtca ggtacttcca
     2701 cgccatttag atctggagac tcctggctgg gggaagcggg gcagagccac ccagccccac
     2761 tctcctaggc agcgcctcag cctcttttat atgtctgttt attctgtatg tgtgtatttg
     2821 tgtgggggag gttgtctgtt gctttctttt ttttaaggct ctggagtgtt gtgtatggtt
     2881 tctcttcaca tcccagcctc cccaagggca cttccaagaa gagaggggat ttgtcggaaa
     2941 aggagagaga aatcccctgg aacaggggag ggcagtgcct gccagctgtt gtggaccttc
     3001 ccgagaaata aatatcctct aaattttcaa acca
//
LOCUS       XM_032647379            2770 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane and coiled-coil domain
            family 2 (TMCC2), transcript variant X3, mRNA.
ACCESSION   XM_032647379
VERSION     XM_032647379.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2770
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2770
                     /gene="TMCC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761534"
     CDS             194..1609
                     /gene="TMCC2"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domains protein 2
                     isoform X3"
                     /protein_id="XP_032503270.1"
                     /db_xref="GeneID:116761534"
                     /translation="MKSKEEETAVDKGDLAALSLPGGPGHGDADGPISLDVPDGAPDP
                     QRTKAAIDHLHQKILKITEQIKIEQEARDDNVAEYLKLAHNADKQQVSRIKQVFEKKN
                     QKSAQTIAQLHKKLEHYRRRLKEIEQNGPSRQPKDVLRDMQQGLKDVGANMRAGISGF
                     GGGVVEGVKGSLSGLSQATHTAVVSKPREFASLIRNKFGSADNIAHLKDPLDDGPPEE
                     AARALSGSATLVSSPKYGSDDECSSASASSAGAGSNSGAGPAAALGSPKSNMLYGAPG
                     NMDAVLEELREIKEGQSHLEDSMEDLKAQLQRDYTYMTQCLQEERYRYERLEEQLNDL
                     TELHQNEMTNLKQELASMEEKVAYQSYERARDIQEAVESCLTRVTKLELQQQQQQVVQ
                     LEGVENANARALLGKFINVILALMAVLLVFVSTLANFITPLMKTRLRITSTALLVLVL
                     FLLWKHWDSLTYLLQHALLPS"
     misc_feature    332..1564
                     /gene="TMCC2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     Region: Tmemb_cc2; pfam10267"
                     /db_xref="CDD:463036"
ORIGIN      
        1 caggctcagg tgggtgcaga atctgcgtcg tctttggtga ttctgctgtg agaaactgcc
       61 cttagagagg cccagcagat ccctgaactc tgctgcccac cccggcaccc tccttacagc
      121 tagctctccg caactgtggg tctctcgccc cctctgctgg ccgctcacgg gatttcttgc
      181 tgggactgtc aagatgaagt ccaaggagga agagacggct gtcgacaagg gggacctcgc
      241 ggccctgagc ctccctggcg gccctggcca cggtgatgcc gatggcccca tcagcctgga
      301 cgtgccggac ggggccccgg acccccagcg gaccaaggcc gccatcgacc acctgcacca
      361 gaagatcctg aagatcacgg agcagatcaa gatcgagcag gaggcgcggg acgacaacgt
      421 ggccgagtac ctgaagctgg cccacaacgc cgacaagcag caggtgtccc gcatcaagca
      481 ggtgttcgag aagaagaacc agaagtcggc ccagaccatc gcccagctgc acaagaagct
      541 ggagcactac cgccggcgcc tgaaggagat cgagcagaac gggccgtcgc ggcagcccaa
      601 ggacgtgctg cgggacatgc agcagggcct gaaggacgtg ggcgccaaca tgcgcgccgg
      661 catcagcggc ttcgggggtg gcgtggtgga gggcgtgaag ggcagcctct ccggcctctc
      721 acaggccacc cacaccgccg tggtgtccaa gccccgggag ttcgccagcc tcatccggaa
      781 caagtttggc agcgctgaca acatcgccca cctgaaggac cccctggacg acgggccccc
      841 cgaggaggcg gcccgggcgc tgagcggcag tgccacgctc gtgtccagcc ccaagtacgg
      901 cagtgacgat gagtgctcca gcgccagcgc cagctcggct ggggcgggca gcaactcggg
      961 ggccgggccc gccgcggcgc tggggagccc caagtcgaac atgctgtacg gcgcccccgg
     1021 aaacatggat gccgtgctgg aagagctgcg ggagatcaag gagggccagt cccacctgga
     1081 ggactcgatg gaggacctga aggctcagct gcagagggac tacacctaca tgacccagtg
     1141 cctgcaggag gagcgctaca gatatgagcg gctggaggag cagctcaacg acctgaccga
     1201 gcttcaccag aatgagatga ccaacctgaa gcaggagctg gccagcatgg aggagaaggt
     1261 ggcctaccag tcctacgaaa gggcccggga catccaggag gctgtggagt cttgcctgac
     1321 ccgggtcacc aagctggagc tgcagcagca acagcagcag gtggtgcagc tggagggcgt
     1381 ggagaacgcc aacgcgcggg cgctgctggg caagttcatc aacgtgatcc tggcgctcat
     1441 ggccgtgctg ctggtgttcg tgtccactct cgccaacttc atcacaccac tcatgaagac
     1501 ccgtctgcgc atcaccagca ctgccctcct ggtcctcgtc ctcttcctcc tctggaagca
     1561 ctgggactcc ctcacctacc tcctgcagca cgcactactg cccagctgag cggccggcct
     1621 gtcccgaccc cgtgctctcc ccagccccca gctggccatg cttctccggg ggaaccctgg
     1681 gactcccgag tccttggact tcatcatgtg tccagtttgg cctcctgccc aaactgtcca
     1741 ttccagcgac ttctgccccc ttctctgtcc ttgcttcttc tggccagtgc ctcctccctg
     1801 ttggcctgaa gggagccgta agtgtagccc tggctggagg cggtgggggc gtcggtggcc
     1861 aaatggagca gaggacaccc ggatggactg ttttgattat ttacagtcac acaagggctc
     1921 ctcccagctg acgcagatgc cgtgggtcag gaaggccaat gagaagaggg gcaggagagg
     1981 gccatgcctc ggctttccta gggaagagcc catgcttcag gcagctccgg ctccctcttt
     2041 gtggagatgg tcagaatgaa ggcaagagct tccactggcc ccggggaagc tccccagctc
     2101 acccctccct cctccagagc tgggttgagg ctgggttctg ggttgggccc ttctgggatc
     2161 tgaaggatgc aggctctgga ggccagttag gtgtggcttt ggatttgtgt gttccctgtt
     2221 atcctttctg cctgtccctg gatctgctct tttcagggaa agaggcccca ggggtcccaa
     2281 gcctcagccc aagctcttag ggttctgttt atttatttat ttatttgttc ctttgtccct
     2341 tattcccctg agctccaggg agaggtccca cccccaccgc cctctccggt cctctctctg
     2401 aagccagggc tgctgcttgg ctgtcaggta cttccacgcc atttagatct ggagactcct
     2461 ggctggggga agcggggcag agccacccag ccccactctc ctaggcagcg cctcagcctc
     2521 ttttatatgt ctgtttattc tgtatgtgtg tatttgtgtg ggggaggttg tctgttgctt
     2581 tctttttttt aaggctctgg agtgttgtgt atggtttctc ttcacatccc agcctcccca
     2641 agggcacttc caagaagaga ggggatttgt cggaaaagga gagagaaatc ccctggaaca
     2701 ggggagggca gtgcctgcca gctgttgtgg accttcccga gaaataaata tcctctaaat
     2761 tttcaaacca
//
LOCUS       XM_032647393            1434 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sterile alpha motif domain containing 13
            (SAMD13), mRNA.
ACCESSION   XM_032647393
VERSION     XM_032647393.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1434
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1434
                     /gene="SAMD13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761542"
     CDS             81..431
                     /gene="SAMD13"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein
                     13"
                     /protein_id="XP_032503284.1"
                     /db_xref="GeneID:116761542"
                     /translation="MRGVAEVKETCSLPMLSVDMENKENGSVGVKNSMENGRPPDPAD
                     WAVMDVVNYFRTAGFEEQASAFQEQEIDGKSLLLMTRNDVLTGLQLKLGPALKIYEYH
                     VKPLQTKHLKNNSS"
     misc_feature    204..410
                     /gene="SAMD13"
                     /note="SAM domain of Atherin/Atherin-like subfamily;
                     Region: SAM_Atherin-like; cd09583"
                     /db_xref="CDD:188982"
     misc_feature    order(288..296,300..305,312..317,324..329,342..344)
                     /gene="SAMD13"
                     /note="putative oligomer interface ML [polypeptide
                     binding]; other site"
                     /db_xref="CDD:188982"
     misc_feature    order(351..362,366..371,378..380,387..389)
                     /gene="SAMD13"
                     /note="putative oligomer interface EH [polypeptide
                     binding]; other site"
                     /db_xref="CDD:188982"
ORIGIN      
        1 cgcgcccggc cggctgcatt ggggctgggc gcgtggcggc cggcgagctc tgtgcggggt
       61 aaagcctccc ggcgccggcc atgcggggag ttgctgaagt aaaggaaacc tgcagcctcc
      121 ccatgctatc tgttgacatg gaaaacaagg aaaatggctc tgtcggtgta aaaaattcca
      181 tggagaatgg gaggccaccc gatcctgcag actgggccgt gatggatgtc gtcaattact
      241 tccgaaccgc aggattcgaa gagcaagcta gtgcgtttca ggaacaggaa attgatggaa
      301 aatccctgct actgatgaca agaaatgatg tgttgacagg acttcagtta aaattggggc
      361 ctgctctgaa aatctatgag tatcacgtaa aacctctgca gacaaagcat ttaaagaaca
      421 actcttcata gtatagtcaa attggggtct tggacctcaa aaaatacata atgacataat
      481 ttagtttcat gtgatgaaac tttgtaaaca gaatacatac atgtgtatat gtaaagaatc
      541 tcaatcaaat gaaacgttat cctattggat agactaggca atccatcggc tgacctgaac
      601 tcagccagga ggagcgagga catgtggaca ggatggttta ccttgtggag tttgtcaaat
      661 agaatgatct ttgatgagat tagacagacc tccccacaaa gaggattttc ttcatagttt
      721 gctttcccag attcctgaaa aaagaatcga atggtatgag catctttcag ttacagatgt
      781 gggaagatca aaagcaagaa cttggggagg gggagaaaga gaaagggatt gtgcctccct
      841 tgaattcctc tgctccttag agcttgtgtt atttggatgg aattgccgac accctttttt
      901 gtagagggtc ctccacttga ccttattaag gtttcactgg gatatgctgc gctgtttgaa
      961 acggacatgc atcatggccc cttcaggagc agactgtagc tctgaaaaga gaaactctgt
     1021 tgtattttgg ggacatccat ccatcttcag ctagctttca tgggggtaat ggtattttct
     1081 gcatagatct gctttaaaat tggttctttg tttctgaaga aagcattttt tttttcactt
     1141 tatggtttgt atttataata atttgtttct gaagaaattt gccaagagtt atagattgaa
     1201 aagccttgtt actagtacag aatattttta tatatatatt ccttcatgat ggtgtaatat
     1261 ttttttaatt gctctgatgc tttgtttgat ttccaatttg agtacttgtt tttaagaact
     1321 tgaaaaagtg ggcttgctac atctctgttc aaagagacat ttgttcaatc tctgtgtgtc
     1381 aatgccttgt tgaattggtg ctttgtggtc acaataaagc attgcttcag ttta
//
LOCUS       XM_032647408            1536 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium voltage-gated channel subfamily
            A member 10 (KCNA10), mRNA.
ACCESSION   XM_032647408
VERSION     XM_032647408.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 9 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-252               VOSU01000011.1     98458840-98459091   c
            253-342             VOSU01000011.1     98458749-98458838   c
            343-343             "N"                1-1
            344-864             VOSU01000011.1     98458228-98458748   c
            865-1029            VOSU01000011.1     98458062-98458226   c
            1030-1161           VOSU01000011.1     98457929-98458060   c
            1162-1242           VOSU01000011.1     98457847-98457927   c
            1243-1290           VOSU01000011.1     98457798-98457845   c
            1291-1362           VOSU01000011.1     98457725-98457796   c
            1363-1434           VOSU01000011.1     98457652-98457723   c
            1435-1536           VOSU01000011.1     98457549-98457650   c
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1536
                     /gene="KCNA10"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 8 bases in 8 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     Proteins"
                     /db_xref="GeneID:116761546"
     CDS             1..1536
                     /gene="KCNA10"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 8 bases in 8 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: potassium voltage-gated
                     channel subfamily A member 10"
                     /protein_id="XP_032503299.1"
                     /db_xref="GeneID:116761546"
                     /translation="MDACGWKEMEVALVDFDNSDEIQEEPGYATDFDLTTPKGQPGSS
                     SFSNWNILINDSTNHETAFSKLPGDYVDPPGPEAVVLNEGNQRVIINIAGLRFETQLR
                     TLNQFPETLLGDXEKRMQFFDSMRNEYFFDRNRPSFDGILYYYQSGGKIRRPASVPID
                     VFADEISFYELGSEAMDQFREDEGFIKDPETLLPTNDIHQQFWLLFEYPESSSAARGV
                     AMVSVLVVVISITVFCLETLPEFQEDRELKVVRDSSLNTSRTVLSHTMFTDPFFIVES
                     TCVMWFTFELVLRFVVCPSKTDFFRNIINIIDIVSIIPYFATLITELVQETEPSTQQN
                     MSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSA
                     VYFAEVDEPESHFSSIPDGFWWAVVTMTTVGYGDMCPNTPGGKIVGTLCAIAGVLTVA
                     LPVPVIVSNFNYFYHRETENEEKQNIPGKTDKRLNSVGSRMGSTDSLRKTNNGCSSEK
                     SRK"
     misc_feature    256..636
                     /gene="KCNA10"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; Region:
                     BTB_POZ; cl38908"
                     /db_xref="CDD:453885"
     misc_feature    799..1401
                     /gene="KCNA10"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
ORIGIN      
        1 atggatgcgt gtggctggaa agaaatggag gttgccctgg tcgattttga taactcagat
       61 gaaatccagg aagagccagg ctacgccaca gacttcgacc taaccacccc gaaaggccag
      121 cctgggagca gctccttctc caactggaat atcctcatca acgacagcac caaccatgag
      181 acggccttct ccaagctccc aggagactac gtggatcccc cagggcctga ggcagtggtc
      241 ttgaatgaag gaaaccagcg ggtgatcatc aacattgctg ggctaaggtt cgagacccag
      301 ctcagaacac tcaatcagtt cccagagacc ctcctgggag acntggagaa aaggatgcag
      361 ttctttgact ccatgagaaa tgagtatttc tttgacagga accggcccag ttttgatgga
      421 atcctatatt attaccagtc tggtgggaaa atccggcgcc cggccagtgt ccctatcgac
      481 gtctttgctg atgagatctc cttctatgaa ctgggcagtg aggccatgga ccagttccga
      541 gaggatgaag gcttcatcaa agatcctgaa acattgctcc ccaccaacga catccaccag
      601 cagttctggc tcctcttcga gtaccctgag agctccagcg ccgcccgtgg tgtggccatg
      661 gtctctgtct tggttgtggt catctccatc accgtcttct gccttgagac acttcccgag
      721 ttccaagaag acagggaact gaaggtggtg agagactcca gcctcaacac gagcaggaca
      781 gtcctctccc acaccatgtt caccgaccct ttcttcatcg tggagtccac ctgcgtcatg
      841 tggttcacct tcgaactggt gctacgcttt gtggtctgcc ccagcaagac cgacttcttc
      901 aggaacatca taaacatcat cgatatcgtc tccatcatcc cctactttgc aaccctcatc
      961 acggagctgg tccaggagac agagccgagc acccagcaga acatgtccct ggccatcctg
     1021 agggtcattc gcctggtgcg ggtcttccgc atcttcaagc tctcccgcca ctccaagggg
     1081 ctgcagatcc tggggcagac gctgaaggct tccatgcggg agctggggct gctcatcttt
     1141 ttccttttta ttggggtcat acttttctcc agtgcagtct actttgctga ggtggacgag
     1201 ccagagtccc atttctctag cattcctgat ggcttctggt gggcggtggt caccatgaca
     1261 actgtgggct atggggacat gtgcccaaat accccaggag ggaaaattgt gggtactctg
     1321 tgtgccattg caggggtcct caccgtcgcc ctccctgtgc cagtcattgt ctccaacttt
     1381 aactactttt accaccggga gactgagaat gaggagaagc agaacatccc aggaaaaact
     1441 gacaaacgcc tcaacagtgt gggctcaaga atgggcagca cagactctct taggaagacc
     1501 aacaatggct gctcctcaga gaagtctagg aagtga
//
LOCUS       XM_032647430            3123 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus contactin 2 (CNTN2), mRNA.
ACCESSION   XM_032647430
VERSION     XM_032647430.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3123
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3123
                     /gene="CNTN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 Proteins, and 47% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761562"
     CDS             1..3123
                     /gene="CNTN2"
                     /codon_start=1
                     /product="contactin-2"
                     /protein_id="XP_032503321.1"
                     /db_xref="GeneID:116761562"
                     /translation="MGTPARRKSHLLMLAAVALVSTPAWSSAWGSPATFGPVFEDQPL
                     GLLFPEESTEEKVTLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTK
                     AQDAGVYQCLASNPVGTVVSREAVLRFGFLQEFSKEERDPVKTHEGWGVMLPCNPPAH
                     YPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTK
                     SVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQATLECFAFGNPVPRIKWRKV
                     DGSLSPQWATAEPTLQIPSVGFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVIS
                     DMEADIGSNLHWECAAAGKPRPTVRWLRDGDPLSSQARVEVLAGDLRFSKLSLEDSGM
                     YQCVAENKHGTIYASAELAVQALAPDFRLNPVRRLIPAARGGEIVIPCQPRAAPKAVV
                     LWSKGTEILVNSSRVTVTPDGTLIIRNISRSDEGKYTCFAENFMGKANSTGILSVRDA
                     TKITLAPSSADINLGDNLTLQCHASHDPTMDLTFIWTLDDFPIDFDKPGSHYRRASVK
                     ETVGDLTILNAQLRHGGKYTCMAQTVVDSASKEATVLVRGPPGPPGGVVVRDIGDTTV
                     QLSWSRGFDNHSPIAKYTLQARTLPAGKWKQVRTNPANIEGNAETAQVLGLTPWMDYE
                     FRVLASNILGTGEPSGPSSNIRTKEAAPSVAPSGLRGGGGAPGELIVNWTPMSREYQN
                     GDGFGYLLSFRRQGSTSWQTARVPGADAQYFVYSNESVRPYTPFEVKIRSYNHRGDGP
                     ESLTAIVYSAEEEPRVAPTKVWAKGVSSSEMNVTWEPVRQDMNGILLGYEIRYWKAGD
                     KEAAADRVRTAGLDTSALVTGLHHNTKYHVTVRAYNRAGTGPASPSANATTVKPPPRR
                     PPGNISWTFSSSSLSIKWDPVVPLRNESAVTGYKMLYQNDLHPTPTLHLTSKNWIEIA
                     VPEDTGHALVQIRTTGPGGDGVPAEVHIVRNGGTSMMVENSAVCPVPHPGTVLRHSVA
                     TLILIGYLEL"
     misc_feature    103..393
                     /gene="CNTN2"
                     /note="First immunoglobulin (Ig) domain of contactin-2;
                     member of the I-set of Ig superfamily domains; Region:
                     IgI_1_Contactin-2; cd05850"
                     /db_xref="CDD:409437"
     misc_feature    order(106..111,352..363)
                     /gene="CNTN2"
                     /note="interdomain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409437"
     misc_feature    112..126
                     /gene="CNTN2"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409437"
     misc_feature    133..150
                     /gene="CNTN2"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409437"
     misc_feature    166..192
                     /gene="CNTN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409437"
     misc_feature    205..225
                     /gene="CNTN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409437"
     misc_feature    229..240
                     /gene="CNTN2"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409437"
     misc_feature    259..273
                     /gene="CNTN2"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409437"
     misc_feature    277..297
                     /gene="CNTN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409437"
     misc_feature    316..345
                     /gene="CNTN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409437"
     misc_feature    352..393
                     /gene="CNTN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409437"
     misc_feature    415..684
                     /gene="CNTN2"
                     /note="Second Ig domain of the neural cell adhesion
                     molecule contactin-2, and similar domains; Region:
                     Ig2_Contactin-2-like; cd05727"
                     /db_xref="CDD:409392"
     misc_feature    421..438
                     /gene="CNTN2"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409392"
     misc_feature    448..468
                     /gene="CNTN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409392"
     misc_feature    order(451..453,541..543,550..552,556..558)
                     /gene="CNTN2"
                     /note="domain-domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409392"
     misc_feature    490..510
                     /gene="CNTN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409392"
     misc_feature    523..531
                     /gene="CNTN2"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409392"
     misc_feature    544..561
                     /gene="CNTN2"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409392"
     misc_feature    568..582
                     /gene="CNTN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409392"
     misc_feature    610..636
                     /gene="CNTN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409392"
     misc_feature    646..684
                     /gene="CNTN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409392"
     misc_feature    715..972
                     /gene="CNTN2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    769..783
                     /gene="CNTN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    808..822
                     /gene="CNTN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    865..879
                     /gene="CNTN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    907..924
                     /gene="CNTN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    946..957
                     /gene="CNTN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    982..1236
                     /gene="CNTN2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1030..1044
                     /gene="CNTN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1069..1083
                     /gene="CNTN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1132..1146
                     /gene="CNTN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1174..1191
                     /gene="CNTN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1213..1224
                     /gene="CNTN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1249..1515
                     /gene="CNTN2"
                     /note="Fifth immunoglobulin (Ig) domain of contactin;
                     Region: Ig5_Contactin; cd04969"
                     /db_xref="CDD:409358"
     misc_feature    1249..1266
                     /gene="CNTN2"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409358"
     misc_feature    1273..1290
                     /gene="CNTN2"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409358"
     misc_feature    1300..1323
                     /gene="CNTN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409358"
     misc_feature    1345..1359
                     /gene="CNTN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409358"
     misc_feature    1399..1410
                     /gene="CNTN2"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409358"
     misc_feature    1411..1428
                     /gene="CNTN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409358"
     misc_feature    1450..1476
                     /gene="CNTN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409358"
     misc_feature    1492..1515
                     /gene="CNTN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409358"
     misc_feature    1519..1809
                     /gene="CNTN2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1576..1590
                     /gene="CNTN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1621..1635
                     /gene="CNTN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1708..1722
                     /gene="CNTN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1750..1767
                     /gene="CNTN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1789..1800
                     /gene="CNTN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1852..2115
                     /gene="CNTN2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2077..2082,2086..2091)
                     /gene="CNTN2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    <2263..>2844
                     /gene="CNTN2"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    2443..2721
                     /gene="CNTN2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2686..2691,2695..2700)
                     /gene="CNTN2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
ORIGIN      
        1 atggggacac ctgccaggag gaaatcacac ttgctaatgc tggccgctgt ggcccttgtc
       61 tccactccag cttggagctc agcctgggga tccccggcca cctttgggcc tgtctttgaa
      121 gaccagcccc tcggtctgct attcccagag gagtccaccg aggaaaaggt gacactggca
      181 tgccgtgccc gggccagccc tccggccacc tacaggtgga agatgaatgg caccgagatg
      241 aagctggagc caggctcccg ccaccagctg gtcgggggca acctggtcat catgaacccc
      301 accaaagccc aggacgccgg cgtctaccag tgcctggcct ccaacccagt gggcaccgtc
      361 gtcagcaggg aggctgtcct ccgctttggc ttcctgcagg aattctccaa ggaggagcga
      421 gacccagtga aaacccatga aggttggggt gtgatgttgc cctgtaaccc acccgcccac
      481 tacccaggct tgtcctaccg ctggctcctc aacgagttcc ccaacttcat ccctacggat
      541 gggcgtcact tcgtgtccca gaccacaggg aacctgtaca ttgcccggac caatgcctca
      601 gacttgggca actactcctg cctggccaca agccacatgg atttctccac caagagcgtc
      661 ttcagcaagt ttgctcagct caacctggct gcggaagaca ccaggctctt tgcccccagc
      721 atcaaggccc ggttcccagc agagacctat gcgctggtgg ggcagcaggc caccctggag
      781 tgcttcgcct tcgggaaccc cgtccccagg atcaagtggc gcaaagtgga tggctccttg
      841 tcaccacagt gggccacagc cgagcccacc ctgcagatcc ccagcgtagg cttcgaggac
      901 gaaggcacct acgagtgtga ggcggagaac tccaagggcc gcgacaccgt ccagggccgc
      961 atcatcgtgc aggctcagcc cgagtggctc aaggtgatct cagacatgga ggctgacatc
     1021 ggttccaacc tgcactggga atgcgcagcc gccggcaagc cccggcccac agtgcgctgg
     1081 cttcgggatg gggatcctct gtcctcccag gcccgggtag aagtgctggc cggagacttg
     1141 cgattctcca agctgagcct ggaggactca ggcatgtacc agtgtgtggc ggagaacaag
     1201 cacggcacca tctacgccag tgccgagctg gccgtgcaag cacttgcccc cgactttagg
     1261 ctgaatcctg taaggcgtct gatccccgca gcccgagggg gagagatcgt tatcccctgt
     1321 cagcccaggg cagctccgaa ggccgtggtg ctctggagca aaggcactga gattttggtc
     1381 aacagcagca gagtgaccgt aactccggat ggcaccttga tcataagaaa catcagtcgg
     1441 tcagatgaag gcaaatatac ctgctttgct gagaatttca tgggcaaagc caacagcacg
     1501 ggcatcctgt ctgtgcgaga tgcaaccaag atcactctag ccccctcgag tgccgacatc
     1561 aacttgggag ataacctgac cctgcagtgc cacgcctccc acgaccccac catggacctc
     1621 accttcatct ggaccctgga tgacttcccc atcgatttcg acaagcctgg gagtcactac
     1681 cgaagggcca gtgtgaagga gacggttggg gatctgacca tcctgaacgc ccagctgcgc
     1741 cacggtggga agtacacatg catggcccag acggtggtgg acagtgcatc taaggaggcc
     1801 acagtcctgg tccgaggtcc gccaggtccc ccaggaggcg tggttgtgag agacatcggt
     1861 gacaccactg tccagctcag ctggagccgt ggctttgaca accacagccc cattgccaag
     1921 tacaccctgc aagctcgtac tctacctgca gggaagtgga agcaggttcg gaccaatccc
     1981 gccaacatcg agggcaacgc cgagaccgcc caggtgctgg gcctcactcc ctggatggat
     2041 tatgagttcc gggtcttagc cagcaacatc ctgggcactg gggagcccag tgggccctcc
     2101 agcaacatcc ggaccaagga agcagccccc tcggtggcac cctcaggtct cagaggaggt
     2161 ggtggagccc ctggagagct cattgtcaac tggacgccca tgtcccggga gtaccagaac
     2221 ggagacggct tcggctacct gctgtccttc cgcaggcagg gcagcactag ctggcagacc
     2281 gcgcgggtgc ccggcgccga tgcccagtac ttcgtctaca gcaacgagag cgtccggcct
     2341 tacaccccct ttgaggtcaa gatccgcagc tacaaccacc gcggggatgg gcctgagagc
     2401 ctcaccgcga ttgtgtactc ggctgaggaa gagcccaggg tggcccctac caaggtctgg
     2461 gccaaagggg tctcatcctc agagatgaac gtgacctggg aaccggtgcg gcaggacatg
     2521 aatggtatcc tcctggggta cgagatccgc tactggaaag ccggggacaa agaagcagct
     2581 gctgaccgag tgaggacagc agggctagac accagtgccc tggtcaccgg cctacaccac
     2641 aacaccaagt accacgtgac tgtgcgggcc tacaaccgcg ccggcactgg gcctgccagc
     2701 ccttccgcca atgccacgac cgtgaagccc cctccacggc gaccccctgg caacatctcc
     2761 tggactttct cgagctccag tcttagtatt aagtgggacc ccgtggtccc gctccggaat
     2821 gagtctgcag tcacaggcta taagatgctg taccagaacg acttacaccc gactcccaca
     2881 ctccacctca ccagcaagaa ttggatagaa attgcggttc ctgaagacac tggccatgcc
     2941 ctggtgcaga ttcggaccac agggccaggg ggggacgggg tcccggcaga agtccacatc
     3001 gtgaggaatg gaggcacaag catgatggtg gagaactcag cagtctgtcc agtcccacat
     3061 cctggcaccg tccttcgtca ctccgtggcg acactgatcc tcataggcta cctggagctc
     3121 tga
//
LOCUS       XM_032647442            4498 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 41
            (ZBTB41), mRNA.
ACCESSION   XM_032647442
VERSION     XM_032647442.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                VOSU01000011.1     180811414-180811510 c
            98-619              VOSU01000011.1     180810280-180810801 c
            620-620             "N"                1-1
            621-1361            VOSU01000011.1     180809539-180810279 c
            1362-1429           VOSU01000011.1     180801257-180801324 c
            1430-1430           "N"                1-1
            1431-1559           VOSU01000011.1     180801128-180801256 c
            1560-1579           VOSU01000011.1     180800361-180800380 c
            1580-1580           "N"                1-1
            1581-1630           VOSU01000011.1     180800311-180800360 c
            1631-1778           VOSU01000011.1     180789380-180789527 c
            1779-1908           VOSU01000011.1     180787162-180787291 c
            1909-2004           VOSU01000011.1     180783443-180783538 c
            2005-2111           VOSU01000011.1     180781932-180782038 c
            2112-2217           VOSU01000011.1     180780164-180780269 c
            2218-2306           VOSU01000011.1     180775033-180775121 c
            2307-4498           VOSU01000011.1     180764534-180766725 c
FEATURES             Location/Qualifiers
     source          1..4498
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4498
                     /gene="ZBTB41"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 long SRA read, 10 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761567"
     CDS             215..2962
                     /gene="ZBTB41"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: zinc finger and BTB
                     domain-containing protein 41"
                     /protein_id="XP_032503333.1"
                     /db_xref="GeneID:116761567"
                     /translation="MKKRRKVTSHLDEKIHLGYRKDSSEGNVAVECEQVTYTHSTERP
                     APEALRCYQELPPSPDQRKLLSSLQYNKNLLKYLNDDRQKQPSFCDLLIIVEGKEFSA
                     HKVVVAVGSSYFHACLSKNPSTDVVTLDHVTHSXFQHLLEFLYTSEFFVYKYEIPLVL
                     EAAKFLDIIDAVKLLNNENVATFQSELTEKSSPEETLSELTGRLSSNHQCKFCSRHFC
                     YKKSLENHLAKTHRSLLLGKKHGLKMLERSFSTRRSKRNRKCPVKFDDTSDDEQESGD
                     GSDNLNQDSFDKEKSDRNDSEDPGSECNAEEDELEEEMSDEYSDIEEHSEKDPNDAEE
                     EAEAGDSVGSIHEGLTPVVIQNTNKKILQCPKCDKTFDRIGKKRKLVSSTHVFHTGEK
                     PFECDICLPALYSXKSNLTVHRKKHSNEQNFIRRSTSASYCNKLHASKKTLAKHVKRF
                     HPENAXEFTSIKKTKSESWKCDICKKSFTRRPHLEEHMILHSQDKPFKCTYCEEHFKS
                     RFARLKHQEKFHLGPFPCDICGRQFNDTGNLKRHIECTHGGKRKWTCFICGKSVRERT
                     TLKEHLRIHSGEKPHLCSICGQSFRHGSSYRLHLRVHHDDKRYECDECGKTFIRHDHL
                     TKHKKIHSGEKAHQCEECGKCFGRRDHLTVHYKSVHLGEKVWQKYKATFHQCDVCKKI
                     FKGKSSLEMHFRTHSGEKPYKCQICNQSFRIKKTLTKHLVIHSDARPFNCQHCNATFK
                     RKDKLKYHIDHVHGIKSPDDPLSASEEKLVSLPVEYSSDDKIFQTEAKQYMDQPKVYP
                     SEAKTMLQSVSAEVCVPVTLVPVQMPDTQSDLVHHTTTLPPPSHEILSPQQPSTDYPR
                     AADLAFLEKYTLTPQPANIVHPVRPEQMLDPREQSYLGTLLGLDNATAVQNISNREHH
                     S"
     misc_feature    413..754
                     /gene="ZBTB41"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 41 (ZBTB41); Region:
                     BTB_POZ_ZBTB41; cd18226"
                     /db_xref="CDD:349535"
     misc_feature    1304..1378
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1400..1465
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1505..1567
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1517..1519,1523..1525,1529..1531,1535..1540,
                     1547..1552,1562..1564,1640..1642,1646..1648,1658..1663,
                     1670..1675,1682..1684,1724..1726,1730..1732,1736..1738,
                     1742..1747,1754..1759)
                     /gene="ZBTB41"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1625..1687
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1661..1738
                     /gene="ZBTB41"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1709..1762
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1790..1855
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1877..1939
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1961..2023
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1976..1978,1982..1984,1988..1990,1994..1999,
                     2006..2011,2018..2020,2060..2062,2066..2068,2078..2083,
                     2090..2095,2102..2104,2144..2146,2150..2152,2156..2158,
                     2162..2167,2174..2179)
                     /gene="ZBTB41"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2039..2107
                     /gene="ZBTB41"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    2045..2107
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2081..2152
                     /gene="ZBTB41"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    2129..2185
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2240..2293
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2276..2347
                     /gene="ZBTB41"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    2324..2386
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2408..2461
                     /gene="ZBTB41"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 ggccgggggc tgaacccgga agtgggtcgg cgccagagcc agcgcgcccg gagtggagct
       61 cagcggccgg gagccaacgg gtagccctgg gttcccgacc atgcaaccct cgggcacgcc
      121 cctccagaag ctgtgatcca agacaatcta gttttccttt ataaagccct caagacactt
      181 atgaagtttc ttgttctgat accgttgtac tgcaatgaag aaaaggagaa aggttacttc
      241 acatcttgac gagaagatcc atctaggcta ccgtaaagat tcttcggaag gaaatgttgc
      301 agtggagtgt gagcaagtaa cctacactca ttccacggaa agaccagctc ccgaagctct
      361 tcgctgttac caggaacttc ctccttctcc ggatcagaga aaacttctga gttctttgca
      421 gtacaataag aacttgctga agtatttaaa tgatgatagg cagaagcagc catctttctg
      481 tgacttactt atcatagtag aaggaaaaga atttagcgcg cacaaagtcg tcgttgctgt
      541 tggcagtagt tattttcatg cgtgtttgag caaaaatcca agcacggatg ttgtcaccct
      601 ggatcacgta actcactccn gttttcagca tttgcttgaa tttctttaca catcagaatt
      661 ttttgtgtac aaatatgaaa tcccacttgt tttagaggct gcaaaattcc tggatattat
      721 agatgcagtt aagctgctaa ataacgaaaa tgttgccact tttcagtctg agctaactga
      781 aaaatcgtca ccagaagaaa cactaagtga gttaactgga agactgtcga gtaatcatca
      841 gtgtaaattc tgtagtagac atttttgtta taagaagtct ttagagaatc atttggcgaa
      901 aacccataga tcccttttat tagggaaaaa gcatgggtta aaaatgctgg agagaagttt
      961 ttccacaagg agatcaaaac ggaatcggaa gtgccctgtt aagtttgatg acactagtga
     1021 tgatgaacaa gaaagtggtg atggatcaga caatttgaat caagacagtt ttgataagga
     1081 aaagtcagat agaaatgatt ctgaggatcc cggcagtgaa tgtaatgctg aagaggatga
     1141 gctagaggag gaaatgtcag atgaatactc tgacattgaa gagcacagtg aaaaggatcc
     1201 caatgatgca gaagaggagg ctgaggctgg tgattctgtc ggaagcattc atgagggatt
     1261 aacccctgta gtcattcaga acactaacaa aaaaatattg cagtgtccca aatgcgataa
     1321 gacatttgac cgcataggta agaaaagaaa gcttgtttcc tccacacacg tgtttcacac
     1381 aggtgagaag ccctttgagt gtgatatttg tctaccagcg ctatattcgn acaagtctaa
     1441 cctaactgtt cacagaaaga agcacagtaa tgaacagaat ttcataagaa ggagcacaag
     1501 tgcctcttat tgtaataaac ttcatgcaag caagaagact ttagccaagc atgttaagag
     1561 atttcatcct gaaaatgcan cagaatttac ttccattaag aagactaaga gtgaaagttg
     1621 gaaatgtgat atttgtaaga aatcttttac tcgaagacca cacttggagg aacatatgat
     1681 tctccattct caagataaac cttttaagtg tacctattgt gaagaacatt ttaaatcacg
     1741 atttgcacgg ttaaagcatc aagagaagtt ccatctgggt ccttttccgt gtgatatatg
     1801 cggtcgccag tttaacgaca ctggaaattt gaaacgccat atagagtgta cccatggtgg
     1861 aaagagaaaa tggacttgct ttatctgtgg gaaatcagta cgagaaagaa ctactttgaa
     1921 agaacatttg agaatccata gtggagaaaa gcctcatctt tgtagtattt gtgggcaaag
     1981 ttttcgtcat ggaagctcat acagacttca cttacgagta catcacgacg ataaaaggta
     2041 tgagtgcgat gaatgtggga aaacgttcat ccgtcacgat caccttacga agcacaagaa
     2101 aatacattca ggtgagaagg ctcatcagtg tgaagaatgt ggaaaatgct ttggtcgtag
     2161 ggatcatctc actgtccatt acaaaagtgt acaccttgga gagaaagtgt ggcaaaaata
     2221 taaagcaacc tttcatcagt gtgatgtttg taagaaaatt tttaaaggca aatcaagtct
     2281 ggaaatgcat tttcggacac attcaggtga aaaaccatac aagtgtcaaa tttgcaatca
     2341 atcttttaga attaagaaaa ctttaacaaa acacttggtc attcattctg atgcccggcc
     2401 tttcaactgt cagcactgta atgcaacatt taagcggaaa gacaagctga aataccacat
     2461 tgaccacgtt catggcataa agtcacctga cgatcctctc agtgcttctg aggagaagct
     2521 tgtatccttg ccagtagagt actcatccga tgataaaatc ttccaaacag aagcaaaaca
     2581 atatatggac cagcccaaag tttacccgtc agaagccaag actatgttgc agagtgtgtc
     2641 tgctgaagtg tgtgtccctg taacgctggt tccagtccag atgcctgaca ctcagagtga
     2701 cctggtgcat cacaccacta ctctccctcc accttctcac gagatcttgt cgccacagca
     2761 gccatccact gattacccac gagcagctga cttagctttc ctggagaaat acactcttac
     2821 tcctcagcct gcaaatatag ttcatccagt ccgacctgaa caaatgctag atcctagaga
     2881 acagtcttat cttggaacgt tattgggcct tgataatgcc actgctgtac aaaatatttc
     2941 taatcgtgag catcattcat gagtaaatct aagcactcca cagacttttt ctgtggttac
     3001 gcgttaatgg tagcctagag ctgacagctt ttagtggggc tgctattttt tcattttctc
     3061 tagtttctca agtcctcaga accatttcaa atcaagaaaa atatgtatct ctgtttactg
     3121 aacatatgaa tatttggacg tattttgagg tataatattt gaaatggaca tttttatgat
     3181 ttttttaaag gctagtgcta atttttaatg gtttctctaa cttttcaaaa ctattagctg
     3241 ttgacattat gagggtattt gtttttagtc atcagtggaa atttttattc ttctttagtc
     3301 tcattcctca tttctccctt ccccatcttc caaacaagtg ttaaggatga tgtagttgta
     3361 ttcttttaag aaagaataca agagtatata gaactgataa ttgcaactgt tccttatcct
     3421 aacttaagtg tcatgattat ttcttccaga tttttaaaaa ctgaaatcag gaatttgaat
     3481 ttataagaaa gtcttggata gttgggtgtt cttttttcat ccggccataa tttcagttta
     3541 tgactatcct ttggtctttt gacaaactca aagccagaaa gctaactaat gcaggattag
     3601 ctcattaaag gaaatgtaga attgaaataa ttacccagat ggttggtttt tgcctgtgct
     3661 tcaattattg tgaataagaa atgcaaatac aggtctaggc attaaattac acaagttgaa
     3721 aatgtgttaa aagcaaaata tgacagtttt aactagatat ttttcaaggt aagttcacct
     3781 tatgtatttt gccatttact tcagaaacaa taatatatca caacatatat cttcatctta
     3841 ctatgggaag ggcagttata actaattagt gaaaatttaa caagctactt ttggtctcat
     3901 ttacctttgc taactgaaac tctgggaaat agaacctaca gatttcatat atgattgtta
     3961 gaaaaggtgc caaacaaaca taaaatttgt gtctaattga acttaatgtt ttttaattaa
     4021 agggaaccat tatttgtata cagatttaca tgtaatctag atctttattt ttgctttaca
     4081 cataagccta atgtctgtaa ttatccttga tttttatttt tgtatgagac aaaagttgag
     4141 gacttggtaa aagtaaatag cagttggagc aaagcctcac tgattaaaat taaatgagga
     4201 aaaagtcagt cagaattgta aaataccttt aaagatgtgc actttccata ttttcaagtc
     4261 agtttaaact taaactagga tgtttcctag tagagctgct taaagggtta gagaataggc
     4321 agggttgatt tattattagc atgtcatttg tatgtaaact actggaaaat agcaatttta
     4381 agagttttct acttcagttt tgtttacact cctaattgct ttaagcactt tttttgtgta
     4441 aagtctggcc cagcccttgt gaaaaaaatc acaaataaaa taatgaagtt ttagtgaa
//
LOCUS       XM_032647451            2182 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DC-STAMP domain containing 1 (DCST1),
            transcript variant X1, mRNA.
ACCESSION   XM_032647451
VERSION     XM_032647451.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2182
                     /gene="DCST1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 Proteins, and 42%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761573"
     CDS             1..2124
                     /gene="DCST1"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase DCST1 isoform X1"
                     /protein_id="XP_032503342.1"
                     /db_xref="GeneID:116761573"
                     /translation="MAIRPHQNGAKGQKRKLPHTTVQRFLSWGLPVSCSRFLWRQRGE
                     FPVSALLLGAGAGGLLAIGLFQLLVNPMNIYEDQKMVTLYSLVGLGAIGWGTSPHIRC
                     ASLLLVPKMLGKEGRLFVLGYALAAIYEGPVANLRHNLNEVIASLGCTVELQINNTRS
                     AWRVSTAPLRAVFKDLLSSKESLKAKTQNITNSFEELDAQVNSESGYAPEDAEGSEET
                     APGRETLRASAFRHHLSTQKMYELKTKLRCSHVVNKAMLNCRRWFDQKHRECIQRIWV
                     PLLSHLLCLPMKFKFFCGVAKVMEVWCRSRIPVEGNFGQTYDSLNQSIRGLEGEFSAT
                     IHLKEEKRAGVLGLNTSWEHVSTEVRDYVRRQEARLEWILGLLHVLLSCTFLFVLHAC
                     FSYVDSYNGDIRFDNIYISTYFCQIDERRKKLGKQTLLPLRSAEKKTVIFPWDPTLQA
                     TEMRNVMRELMETLPVLLLLLLLCGLDWALYSIFDTIRHHSFVQYSFRSSHKLEVKVG
                     GDSMLARLLRNTIGALNTSSETVVESNNMPCLPQPVPLSTRAYLRAALPSGLLVCLCL
                     LQAFSYRLRRVIVAFYFPKREKKRILFLYNDLLRKRAAFTQLRRATIVRRARQQRAPR
                     RHLADILHRRCLPLLRPWLRRRCVVCQAPETPESYVCPTPDCEAVYCRSCWNDMRQRC
                     PVCTPREELSSSAYSDSNDDATYAE"
     misc_feature    1213..1785
                     /gene="DCST1"
                     /note="DC-STAMP-like protein; Region: DC_STAMP; pfam07782"
                     /db_xref="CDD:462265"
ORIGIN      
        1 atggccatca gacctcatca gaacggagca aaagggcaaa aaaggaaact accccacacc
       61 acggtgcaga ggttcctgag ctgggggctg cccgtctcct gtagccgatt cctgtggcgc
      121 cagcggggcg agtttccggt tagtgctctc ctgctggggg caggcgccgg ggggctcctg
      181 gccataggtc tctttcagct cctggtgaac cctatgaaca tctatgaaga tcagaagatg
      241 gtgacgttgt acagcttggt gggcttgggg gccataggct ggggtacctc ccctcacatc
      301 cgctgcgcca gcctcctgct agtacccaag atgctgggca aggagggccg gctctttgtg
      361 ctgggatacg ccttggccgc catctatgag ggaccagtgg ccaacctgcg gcacaacctc
      421 aatgaggtga tagcatcgct cggctgcact gtggaactgc agatcaacaa cacccgctcg
      481 gcttggcgcg tctccacagc cccgctgcgg gcagtgttca aggacctgct gagcagcaaa
      541 gagtcattga aagccaagac tcagaacatc accaactcct ttgaggaact ggatgcccag
      601 gtgaacagtg agagtggata tgcgcccgag gatgccgagg gctcggagga gacagcccca
      661 ggcagagaga ccctccgcgc ctcagccttc agacaccacc tctctacaca gaagatgtat
      721 gagctgaaga ccaagctgcg ttgctcccat gtggtgaaca aggccatgct aaactgccgc
      781 cgctggtttg accaaaagca cagagagtgc attcaacgca tctgggtccc actgctcagc
      841 cacctgctct gcctgcccat gaagttcaag ttcttctgtg gcgttgccaa ggtgatggaa
      901 gtttggtgcc gtagtcgcat cccagtggaa ggcaactttg ggcagaccta tgactccctc
      961 aaccagtcta ttcgcggcct ggagggggaa ttttcagcca ctattcacct caaggaagag
     1021 aagcgggctg gggtgctggg cctcaacacg agctgggaac acgtgagcac cgaggtgcgg
     1081 gactacgtga gacgccagga ggcccggctt gagtggatcc tggggctgct gcacgtgctg
     1141 ctctcctgca ccttcctgtt cgtcctccac gcgtgcttct cctatgtgga cagctataat
     1201 ggggacatcc gcttcgacaa catctacatc agcacctact tctgtcagat cgatgaacgc
     1261 aggaagaagc tgggcaagca gactctgctg ccgctccgca gcgctgagaa gaaaaccgtc
     1321 atcttcccct gggaccccac tctccaggcc acagaaatga gaaatgtgat gagggagctc
     1381 atggagacac tgccggtgct gctgctgcta ctactgctgt gtggcctgga ctgggctctc
     1441 tactccatct tcgacaccat ccgccaccac tccttcgtgc agtactcctt ccgcagcagt
     1501 cataaactgg aggtgaaagt cgggggggac tccatgcttg cccggcttct tcggaatacc
     1561 atcggagccc tgaacacctc ctcggagacg gtggtggaat ccaacaacat gccctgcctg
     1621 ccccagcccg tgcccctgag taccagggcc tatttgaggg ctgcactacc aagcggcctg
     1681 ctagtgtgtc tctgcctgct ccaagctttc agctaccggc tccggagggt catcgtagcc
     1741 ttctacttcc ccaagcgtga gaagaagcgg atccttttcc tctacaacga tctcctgagg
     1801 aagagagcag ccttcaccca actgaggagg gccaccatcg tgaggcgggc gcgacagcag
     1861 agggctcctc gccgccactt ggcggacatc ctgcaccgcc gctgcctgcc cctcttgcgc
     1921 ccctggctgc gcaggcgatg cgtggtgtgc caggcacccg agacgcccga gtcctacgtg
     1981 tgccctacgc cggattgcga ggcagtgtac tgccggtcgt gctggaacga catgcggcag
     2041 cggtgcccgg tctgcacacc ccgcgaggag ctctcctcct ccgcctacag cgacagcaac
     2101 gacgatgcta cctacgcgga gtgaagaggc gtcctgctgg ctctcccacc cgctccttcc
     2161 tgtttaataa aatgctttgt ac
//
LOCUS       XM_032647461            2107 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DC-STAMP domain containing 1 (DCST1),
            transcript variant X2, mRNA.
ACCESSION   XM_032647461
VERSION     XM_032647461.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2107
                     /gene="DCST1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 44%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761573"
     CDS             1..2049
                     /gene="DCST1"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase DCST1 isoform X2"
                     /protein_id="XP_032503352.1"
                     /db_xref="GeneID:116761573"
                     /translation="MAIRPHQNGAKGQKRKLPHTTVQRFLSWGLPVSCSRFLWRQRGE
                     FPVSALLLGAGAGGLLAIGLGAIGWGTSPHIRCASLLLVPKMLGKEGRLFVLGYALAA
                     IYEGPVANLRHNLNEVIASLGCTVELQINNTRSAWRVSTAPLRAVFKDLLSSKESLKA
                     KTQNITNSFEELDAQVNSESGYAPEDAEGSEETAPGRETLRASAFRHHLSTQKMYELK
                     TKLRCSHVVNKAMLNCRRWFDQKHRECIQRIWVPLLSHLLCLPMKFKFFCGVAKVMEV
                     WCRSRIPVEGNFGQTYDSLNQSIRGLEGEFSATIHLKEEKRAGVLGLNTSWEHVSTEV
                     RDYVRRQEARLEWILGLLHVLLSCTFLFVLHACFSYVDSYNGDIRFDNIYISTYFCQI
                     DERRKKLGKQTLLPLRSAEKKTVIFPWDPTLQATEMRNVMRELMETLPVLLLLLLLCG
                     LDWALYSIFDTIRHHSFVQYSFRSSHKLEVKVGGDSMLARLLRNTIGALNTSSETVVE
                     SNNMPCLPQPVPLSTRAYLRAALPSGLLVCLCLLQAFSYRLRRVIVAFYFPKREKKRI
                     LFLYNDLLRKRAAFTQLRRATIVRRARQQRAPRRHLADILHRRCLPLLRPWLRRRCVV
                     CQAPETPESYVCPTPDCEAVYCRSCWNDMRQRCPVCTPREELSSSAYSDSNDDATYAE
                     "
     misc_feature    1138..1710
                     /gene="DCST1"
                     /note="DC-STAMP-like protein; Region: DC_STAMP; pfam07782"
                     /db_xref="CDD:462265"
ORIGIN      
        1 atggccatca gacctcatca gaacggagca aaagggcaaa aaaggaaact accccacacc
       61 acggtgcaga ggttcctgag ctgggggctg cccgtctcct gtagccgatt cctgtggcgc
      121 cagcggggcg agtttccggt tagtgctctc ctgctggggg caggcgccgg ggggctcctg
      181 gccataggct tgggggccat aggctggggt acctcccctc acatccgctg cgccagcctc
      241 ctgctagtac ccaagatgct gggcaaggag ggccggctct ttgtgctggg atacgccttg
      301 gccgccatct atgagggacc agtggccaac ctgcggcaca acctcaatga ggtgatagca
      361 tcgctcggct gcactgtgga actgcagatc aacaacaccc gctcggcttg gcgcgtctcc
      421 acagccccgc tgcgggcagt gttcaaggac ctgctgagca gcaaagagtc attgaaagcc
      481 aagactcaga acatcaccaa ctcctttgag gaactggatg cccaggtgaa cagtgagagt
      541 ggatatgcgc ccgaggatgc cgagggctcg gaggagacag ccccaggcag agagaccctc
      601 cgcgcctcag ccttcagaca ccacctctct acacagaaga tgtatgagct gaagaccaag
      661 ctgcgttgct cccatgtggt gaacaaggcc atgctaaact gccgccgctg gtttgaccaa
      721 aagcacagag agtgcattca acgcatctgg gtcccactgc tcagccacct gctctgcctg
      781 cccatgaagt tcaagttctt ctgtggcgtt gccaaggtga tggaagtttg gtgccgtagt
      841 cgcatcccag tggaaggcaa ctttgggcag acctatgact ccctcaacca gtctattcgc
      901 ggcctggagg gggaattttc agccactatt cacctcaagg aagagaagcg ggctggggtg
      961 ctgggcctca acacgagctg ggaacacgtg agcaccgagg tgcgggacta cgtgagacgc
     1021 caggaggccc ggcttgagtg gatcctgggg ctgctgcacg tgctgctctc ctgcaccttc
     1081 ctgttcgtcc tccacgcgtg cttctcctat gtggacagct ataatgggga catccgcttc
     1141 gacaacatct acatcagcac ctacttctgt cagatcgatg aacgcaggaa gaagctgggc
     1201 aagcagactc tgctgccgct ccgcagcgct gagaagaaaa ccgtcatctt cccctgggac
     1261 cccactctcc aggccacaga aatgagaaat gtgatgaggg agctcatgga gacactgccg
     1321 gtgctgctgc tgctactact gctgtgtggc ctggactggg ctctctactc catcttcgac
     1381 accatccgcc accactcctt cgtgcagtac tccttccgca gcagtcataa actggaggtg
     1441 aaagtcgggg gggactccat gcttgcccgg cttcttcgga ataccatcgg agccctgaac
     1501 acctcctcgg agacggtggt ggaatccaac aacatgccct gcctgcccca gcccgtgccc
     1561 ctgagtacca gggcctattt gagggctgca ctaccaagcg gcctgctagt gtgtctctgc
     1621 ctgctccaag ctttcagcta ccggctccgg agggtcatcg tagccttcta cttccccaag
     1681 cgtgagaaga agcggatcct tttcctctac aacgatctcc tgaggaagag agcagccttc
     1741 acccaactga ggagggccac catcgtgagg cgggcgcgac agcagagggc tcctcgccgc
     1801 cacttggcgg acatcctgca ccgccgctgc ctgcccctct tgcgcccctg gctgcgcagg
     1861 cgatgcgtgg tgtgccaggc acccgagacg cccgagtcct acgtgtgccc tacgccggat
     1921 tgcgaggcag tgtactgccg gtcgtgctgg aacgacatgc ggcagcggtg cccggtctgc
     1981 acaccccgcg aggagctctc ctcctccgcc tacagcgaca gcaacgacga tgctacctac
     2041 gcggagtgaa gaggcgtcct gctggctctc ccacccgctc cttcctgttt aataaaatgc
     2101 tttgtac
//
LOCUS       XM_032647475            6042 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X1, mRNA.
ACCESSION   XM_032647475
VERSION     XM_032647475.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6042
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6042
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 41
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..3058
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X1"
                     /protein_id="XP_032503366.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAVDSADRSPRPTSAPAIAQS
                     QAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKVEKTHIEVTV
                     PTSNGDQIQKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESVP
                     EPQPSEWDKRLSTHSPFRTLNINGQIPTGEGVKKTSVLPSERKVGGPENISGIRTEEV
                     AAMTKGPSTNPDSEWEGPKHSIIPSKSQMTTPSESPQNFDFGSLSISSKETEEKEQGA
                     AGYLDIKEMSRGPSGECVGVEEQASALKSSISPASSQLQLTEKKAESSEEHVIPREPV
                     GEQNGSFLDSRVGNQFPTLIRSFQPPLVKTQTVTISDTANAVKSEIPTKDVPIVHTET
                     KTITYEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTTQITKTVKGGISETRIEKRI
                     VITGDADIDHDQVLVQAIKEAKEQHPDMSVTKVVVHQETEISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1961..2107
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2720..3043
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagccgt tgattcagca gaccgaagtc ctcggcccac
     1681 ctctgcaccg gccattgctc agagtcaggc cgcagaaggc agcgtcccag gtgcacctgt
     1741 taaaaaagca gtggtttcta aaacaccaaa ggaaacagtg caggttgaag tgaaaaagga
     1801 agaagtccca cctgagcaac ctgagccaga gctcacagaa gtgtggaagg tggaaaaaac
     1861 ccacatcgag gtcacagtac ccacctcaaa tggtgaccaa atacagaaaa agagagagag
     1921 actagatggt gaaaacattt atatcagaca tagcaattta atgttggagg atttagacaa
     1981 aagtcaagaa gagatcaaaa aacatcatgc cagcatcagt gagctgaaaa agaacttcat
     2041 ggaatctgta ccagaaccac agcctagtga atgggataaa cgcttatcca ctcactctcc
     2101 ctttcgaaca cttaacatca atgggcaaat ccctacagga gaaggagtga agaaaacctc
     2161 tgtccttccc tcggaaagaa aggttggtgg gccagagaat ataagtggca ttcgcacaga
     2221 ggaggtggct gccatgacca aggggccatc taccaaccct gactctgaat gggagggccc
     2281 caagcattca ataattccta gtaagagcca aatgactacc ccgtcggagt ctccacaaaa
     2341 ctttgacttt ggctccctct ccataagcag caaggagacg gaagagaagg agcagggggc
     2401 agctggctat cttgatatta aggaaatgtc gagaggtcca agtggggaat gtgtaggagt
     2461 ggaggaacaa gccagtgcct taaagtcctc aatatcacca gcttcctctc agctgcaact
     2521 tactgaaaaa aaagcagaga gtagtgaaga acatgttata ccaagagagc ctgttggaga
     2581 gcaaaatgga tcatttcttg actctcgtgt gggtaaccag ttccccaccc tcattcgaag
     2641 tttccagcct cccctggtga agactcagac cgtcaccatc tcagacactg ccaatgctgt
     2701 gaaaagtgaa attccaacca aagacgtccc tatagtccac actgagacca agaccatcac
     2761 ttatgaggct gcccagactg acgacagcaa cggggacttg gacccaggag tcttgctgac
     2821 agctcagacc atcacatctg agaccaccag cagcaccacc acaactcaaa ttaccaagac
     2881 tgtaaaaggt gggatttcag agacccggat tgaaaagcga attgtgatca caggagatgc
     2941 cgatattgac catgatcagg tcctcgtaca ggccatcaag gaggcaaagg agcagcaccc
     3001 agacatgtca gtgaccaagg tggtcgtcca tcaggagacc gagatctctg aggagtgagc
     3061 tcaggaactg tcctaccctc ccccctcccc cggctccctg cccatctccc gtcccagaga
     3121 aaaccagcgg aatgataaag aagctaacct gcaatagtca gacttcagac ttttaaaatg
     3181 attgattcta aaccaccaga aaagcaattt cattttctat ttggagttta taccaagaaa
     3241 gtcttctaga tatcactgat ccttttgaat acatttttct atattgtgat accagaaatt
     3301 gttcaacttt tcactctttg gactgttttt aaagagcctt ttgttttttt atggggtggt
     3361 ttgtaacccc ttcagcccag cctcccccca tttatactga cagggtcccc agcattcttc
     3421 gggaaatcct ccaatgactc tgtcagctgt gttgggggac aaagccagct taatggggct
     3481 tccctgctcc tcctctagtt tatacccttt agatggcagc agaaacttca taaaccagcc
     3541 ctttctcaga gccagtgatg taactttatc agaatgtcag gcagggcggc tgccctgatc
     3601 cagagacccc aggaagatgt ccctgtccct ttgctgaggg tggtatgggg aggcagaggc
     3661 ctctgctaag aatgtagtat tgttttcctt cctctctcct gttctttctt tttggagctt
     3721 ctttagatca aagacataag aagttgcttc agatatatct gatactgtga atgtttgaac
     3781 atatccgtgg ccttcacctt cctgccctcc ctcccctttt acctcatcag aagcagtggc
     3841 tctgctaagt gctcccccca cctcccatct caggagagac caaaactcac agaaaaatag
     3901 gcactttggg ccaaaagcac tgaccgcaca tttttagtgg tgatttggac aaagaaagtt
     3961 ggagagattt ttttaaaggt tttctagttc tgggaatgtg cacttcacac gagggagtgg
     4021 tggagtttac ctcagttgga tcctgctaag aagtatttcc aggagaacat ccctgagcct
     4081 ctctctttaa tccaggggtg agagatgatg tgactgagag aggaggcgat cgtggtccag
     4141 gccggcccct gcctgcagag acccttctgg agtgtgggaa ttggctttta ggggccacgc
     4201 tccccacaaa accccacttg acaaggggta caaacaccag ctccactcat ccccacttgc
     4261 catctgaggt ctgtcaggtt ttgtggcttg atgtttgcgg tgggtttggg tttaattttt
     4321 tgtttttgtt tttgaaaatg aggactgatg tccccaatcc cactattcct ggtaaagatt
     4381 aggggacatt tttattcagt agggcctctc tgatcttcca gcttgcttcc cacaaacaga
     4441 tctacctaca agttcttaga atcctgattc taggacagaa agtgagcttc ctgaggtgga
     4501 cagtgggtcc cagtcagcag tggctggggg ctccagggcg gtgagcagga gagaagtcta
     4561 cagcctctgc tcccagcccg cagcacgtct ccggagtctc tgctggctga cctttgttta
     4621 gacaaactca gttggtttga actgttttca cgagtgtgcg tttttctctt agtacttact
     4681 tgagactgtt actaaccaac aggtagctct ctctgggcag ggacaggaag agctcaggtg
     4741 ggatatgtga caggcttcgg gggggaagga gagtgccctg tctcagggac agacggcctg
     4801 gggcatacgg tctggaacga tggggctttt ccaggccgtg cccaagcccg agctttgttg
     4861 cccagagcgg tggtgaggtt ggaaatccag ctcacatcat ataggcatgc gatgtgagct
     4921 cacctgccaa tggccagctg tcctgctgga agagctgccg gagcttgcag agctgcaacc
     4981 tgtggaacga agatggggaa aggaagaggg ctcagcatgc acgtcaggaa cctggcacac
     5041 tgagtattct gtgccatcca gctcagtgtg gccactttca ctgcctagga ccacaaatca
     5101 ggggcctgaa cttcccctca acctgtcacc aactcacttc agcctgcttc cttgtctata
     5161 agtcggacca gaagatctcc aatgcccttc tggcgctgag aagccatgat atggacaagc
     5221 caacacttgg aaggggtgtc cttccaagcc tctttccttt tcctccctct ctggttacag
     5281 aacttggggt ttggcaattg tttggatctt tttttttctt tctgcaactg tgtgtgtgcg
     5341 tgtgtgtgaa gaaaaacaga ctgtccaggt ggaaatggtg aagaggggag aagcgttcat
     5401 ttccagtgtc aacaacttgg cagttttcct aaagtgactc agacacagca caggaacaac
     5461 tctcactgca attttatttt tatctcactt cagaaacaaa gatttcttcc aagccacgtg
     5521 aggtctctgc cacccaccta cccaacccac ccacaaagca ggacctgaat ttatccgctg
     5581 agggcccaca gagcctggct gcagggacct gtcagggcct ctgcccaccc ccagtccccc
     5641 accgtgtgtt gcggggcagc tgagggtgag ggagcaacag tccacctcgg gaaatggagc
     5701 cagggctatg gcctgaccaa taccaaggaa ggctcgtggg aaatacctgt ccaggatctt
     5761 agccccaggc tggttggttt tacagatctc tctcaaatgt tttattttgg tgacaaaaat
     5821 gaaggagctt tgtaaattta aaaaaaaaat tatgaatcat atcaagtagt tgtttacatt
     5881 tcttgacaaa ataggaacta tgccagccga atcaaattgg caaaatcctt agattaaata
     5941 ggcaataatt aggtctgccg ttttggcctt ttgtagttag agaagtggtg gtagtgttta
     6001 gatactgttt ggtcttgctt cttgtattgc atttttcaat aa
//
LOCUS       XM_032647484            6030 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X2, mRNA.
ACCESSION   XM_032647484
VERSION     XM_032647484.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6030
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6030
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 41
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..3046
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X2"
                     /protein_id="XP_032503375.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKVEKTHIEVT
                     VPTSNGDQIQKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESV
                     PEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGVKKTSVLPSERKNISGIRTEEVAAMT
                     KGPSTNPDSEWEGPKHSIIPSKSQMTTPSESPQNFDFGSLSISSKETEEKEQGAAGYL
                     DIKEMSRGPSGECVGVEEQASALKSSISPASSQLQLTEKKAESSEEHVIPREPVGEQN
                     GSFLDSRVGNQFPTLIRSFQPPLVKTQTVTISDTANAVKSEIPTKDVPIVHTETKTIT
                     YEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTTQITKTVKGGISETRIEKRIVITG
                     DADIDHDQVLVQAIKEAKEQHPDMSVTKVVVHQETEISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1964..2110
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2708..3031
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa gtcctcggcc
     1681 cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc caggtgcacc
     1741 tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg aagtgaaaaa
     1801 ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga aggtggaaaa
     1861 aacccacatc gaggtcacag tacccacctc aaatggtgac caaatacaga aaaagagaga
     1921 gagactagat ggtgaaaaca tttatatcag acatagcaat ttaatgttgg aggatttaga
     1981 caaaagtcaa gaagagatca aaaaacatca tgccagcatc agtgagctga aaaagaactt
     2041 catggaatct gtaccagaac cacagcctag tgaatgggat aaacgcttat ccactcactc
     2101 tccctttcga acacttaaca tcaatgggca aatccctaca ggagaaggag tgaagaaaac
     2161 ctctgtcctt ccctcggaaa gaaagaatat aagtggcatt cgcacagagg aggtggctgc
     2221 catgaccaag gggccatcta ccaaccctga ctctgaatgg gagggcccca agcattcaat
     2281 aattcctagt aagagccaaa tgactacccc gtcggagtct ccacaaaact ttgactttgg
     2341 ctccctctcc ataagcagca aggagacgga agagaaggag cagggggcag ctggctatct
     2401 tgatattaag gaaatgtcga gaggtccaag tggggaatgt gtaggagtgg aggaacaagc
     2461 cagtgcctta aagtcctcaa tatcaccagc ttcctctcag ctgcaactta ctgaaaaaaa
     2521 agcagagagt agtgaagaac atgttatacc aagagagcct gttggagagc aaaatggatc
     2581 atttcttgac tctcgtgtgg gtaaccagtt ccccaccctc attcgaagtt tccagcctcc
     2641 cctggtgaag actcagaccg tcaccatctc agacactgcc aatgctgtga aaagtgaaat
     2701 tccaaccaaa gacgtcccta tagtccacac tgagaccaag accatcactt atgaggctgc
     2761 ccagactgac gacagcaacg gggacttgga cccaggagtc ttgctgacag ctcagaccat
     2821 cacatctgag accaccagca gcaccaccac aactcaaatt accaagactg taaaaggtgg
     2881 gatttcagag acccggattg aaaagcgaat tgtgatcaca ggagatgccg atattgacca
     2941 tgatcaggtc ctcgtacagg ccatcaagga ggcaaaggag cagcacccag acatgtcagt
     3001 gaccaaggtg gtcgtccatc aggagaccga gatctctgag gagtgagctc aggaactgtc
     3061 ctaccctccc ccctcccccg gctccctgcc catctcccgt cccagagaaa accagcggaa
     3121 tgataaagaa gctaacctgc aatagtcaga cttcagactt ttaaaatgat tgattctaaa
     3181 ccaccagaaa agcaatttca ttttctattt ggagtttata ccaagaaagt cttctagata
     3241 tcactgatcc ttttgaatac atttttctat attgtgatac cagaaattgt tcaacttttc
     3301 actctttgga ctgtttttaa agagcctttt gtttttttat ggggtggttt gtaacccctt
     3361 cagcccagcc tccccccatt tatactgaca gggtccccag cattcttcgg gaaatcctcc
     3421 aatgactctg tcagctgtgt tgggggacaa agccagctta atggggcttc cctgctcctc
     3481 ctctagttta taccctttag atggcagcag aaacttcata aaccagccct ttctcagagc
     3541 cagtgatgta actttatcag aatgtcaggc agggcggctg ccctgatcca gagaccccag
     3601 gaagatgtcc ctgtcccttt gctgagggtg gtatggggag gcagaggcct ctgctaagaa
     3661 tgtagtattg ttttccttcc tctctcctgt tctttctttt tggagcttct ttagatcaaa
     3721 gacataagaa gttgcttcag atatatctga tactgtgaat gtttgaacat atccgtggcc
     3781 ttcaccttcc tgccctccct ccccttttac ctcatcagaa gcagtggctc tgctaagtgc
     3841 tccccccacc tcccatctca ggagagacca aaactcacag aaaaataggc actttgggcc
     3901 aaaagcactg accgcacatt tttagtggtg atttggacaa agaaagttgg agagattttt
     3961 ttaaaggttt tctagttctg ggaatgtgca cttcacacga gggagtggtg gagtttacct
     4021 cagttggatc ctgctaagaa gtatttccag gagaacatcc ctgagcctct ctctttaatc
     4081 caggggtgag agatgatgtg actgagagag gaggcgatcg tggtccaggc cggcccctgc
     4141 ctgcagagac ccttctggag tgtgggaatt ggcttttagg ggccacgctc cccacaaaac
     4201 cccacttgac aaggggtaca aacaccagct ccactcatcc ccacttgcca tctgaggtct
     4261 gtcaggtttt gtggcttgat gtttgcggtg ggtttgggtt taattttttg tttttgtttt
     4321 tgaaaatgag gactgatgtc cccaatccca ctattcctgg taaagattag gggacatttt
     4381 tattcagtag ggcctctctg atcttccagc ttgcttccca caaacagatc tacctacaag
     4441 ttcttagaat cctgattcta ggacagaaag tgagcttcct gaggtggaca gtgggtccca
     4501 gtcagcagtg gctgggggct ccagggcggt gagcaggaga gaagtctaca gcctctgctc
     4561 ccagcccgca gcacgtctcc ggagtctctg ctggctgacc tttgtttaga caaactcagt
     4621 tggtttgaac tgttttcacg agtgtgcgtt tttctcttag tacttacttg agactgttac
     4681 taaccaacag gtagctctct ctgggcaggg acaggaagag ctcaggtggg atatgtgaca
     4741 ggcttcgggg gggaaggaga gtgccctgtc tcagggacag acggcctggg gcatacggtc
     4801 tggaacgatg gggcttttcc aggccgtgcc caagcccgag ctttgttgcc cagagcggtg
     4861 gtgaggttgg aaatccagct cacatcatat aggcatgcga tgtgagctca cctgccaatg
     4921 gccagctgtc ctgctggaag agctgccgga gcttgcagag ctgcaacctg tggaacgaag
     4981 atggggaaag gaagagggct cagcatgcac gtcaggaacc tggcacactg agtattctgt
     5041 gccatccagc tcagtgtggc cactttcact gcctaggacc acaaatcagg ggcctgaact
     5101 tcccctcaac ctgtcaccaa ctcacttcag cctgcttcct tgtctataag tcggaccaga
     5161 agatctccaa tgcccttctg gcgctgagaa gccatgatat ggacaagcca acacttggaa
     5221 ggggtgtcct tccaagcctc tttccttttc ctccctctct ggttacagaa cttggggttt
     5281 ggcaattgtt tggatctttt tttttctttc tgcaactgtg tgtgtgcgtg tgtgtgaaga
     5341 aaaacagact gtccaggtgg aaatggtgaa gaggggagaa gcgttcattt ccagtgtcaa
     5401 caacttggca gttttcctaa agtgactcag acacagcaca ggaacaactc tcactgcaat
     5461 tttattttta tctcacttca gaaacaaaga tttcttccaa gccacgtgag gtctctgcca
     5521 cccacctacc caacccaccc acaaagcagg acctgaattt atccgctgag ggcccacaga
     5581 gcctggctgc agggacctgt cagggcctct gcccaccccc agtcccccac cgtgtgttgc
     5641 ggggcagctg agggtgaggg agcaacagtc cacctcggga aatggagcca gggctatggc
     5701 ctgaccaata ccaaggaagg ctcgtgggaa atacctgtcc aggatcttag ccccaggctg
     5761 gttggtttta cagatctctc tcaaatgttt tattttggtg acaaaaatga aggagctttg
     5821 taaatttaaa aaaaaaatta tgaatcatat caagtagttg tttacatttc ttgacaaaat
     5881 aggaactatg ccagccgaat caaattggca aaatccttag attaaatagg caataattag
     5941 gtctgccgtt ttggcctttt gtagttagag aagtggtggt agtgtttaga tactgtttgg
     6001 tcttgcttct tgtattgcat ttttcaataa
//
LOCUS       XM_032647493            5988 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X3, mRNA.
ACCESSION   XM_032647493
VERSION     XM_032647493.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5988
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5988
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 41
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..3004
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X3"
                     /protein_id="XP_032503384.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKKKRERLDGE
                     NIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESVPEPQPSEWDKRLSTHSPFR
                     TLNINGQIPTGEGVKKTSVLPSERKVGGPENISGIRTEEVAAMTKGPSTNPDSEWEGP
                     KHSIIPSKSQMTTPSESPQNFDFGSLSISSKETEEKEQGAAGYLDIKEMSRGPSGECV
                     GVEEQASALKSSISPASSQLQLTEKKAESSEEHVIPREPVGEQNGSFLDSRVGNQFPT
                     LIRSFQPPLVKTQTVTISDTANAVKSEIPTKDVPIVHTETKTITYEAAQTDDSNGDLD
                     PGVLLTAQTITSETTSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAI
                     KEAKEQHPDMSVTKVVVHQETEISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1907..2053
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2666..2989
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa gtcctcggcc
     1681 cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc caggtgcacc
     1741 tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg aagtgaaaaa
     1801 ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga agaaaaagag
     1861 agagagacta gatggtgaaa acatttatat cagacatagc aatttaatgt tggaggattt
     1921 agacaaaagt caagaagaga tcaaaaaaca tcatgccagc atcagtgagc tgaaaaagaa
     1981 cttcatggaa tctgtaccag aaccacagcc tagtgaatgg gataaacgct tatccactca
     2041 ctctcccttt cgaacactta acatcaatgg gcaaatccct acaggagaag gagtgaagaa
     2101 aacctctgtc cttccctcgg aaagaaaggt tggtgggcca gagaatataa gtggcattcg
     2161 cacagaggag gtggctgcca tgaccaaggg gccatctacc aaccctgact ctgaatggga
     2221 gggccccaag cattcaataa ttcctagtaa gagccaaatg actaccccgt cggagtctcc
     2281 acaaaacttt gactttggct ccctctccat aagcagcaag gagacggaag agaaggagca
     2341 gggggcagct ggctatcttg atattaagga aatgtcgaga ggtccaagtg gggaatgtgt
     2401 aggagtggag gaacaagcca gtgccttaaa gtcctcaata tcaccagctt cctctcagct
     2461 gcaacttact gaaaaaaaag cagagagtag tgaagaacat gttataccaa gagagcctgt
     2521 tggagagcaa aatggatcat ttcttgactc tcgtgtgggt aaccagttcc ccaccctcat
     2581 tcgaagtttc cagcctcccc tggtgaagac tcagaccgtc accatctcag acactgccaa
     2641 tgctgtgaaa agtgaaattc caaccaaaga cgtccctata gtccacactg agaccaagac
     2701 catcacttat gaggctgccc agactgacga cagcaacggg gacttggacc caggagtctt
     2761 gctgacagct cagaccatca catctgagac caccagcagc accaccacaa ctcaaattac
     2821 caagactgta aaaggtggga tttcagagac ccggattgaa aagcgaattg tgatcacagg
     2881 agatgccgat attgaccatg atcaggtcct cgtacaggcc atcaaggagg caaaggagca
     2941 gcacccagac atgtcagtga ccaaggtggt cgtccatcag gagaccgaga tctctgagga
     3001 gtgagctcag gaactgtcct accctccccc ctcccccggc tccctgccca tctcccgtcc
     3061 cagagaaaac cagcggaatg ataaagaagc taacctgcaa tagtcagact tcagactttt
     3121 aaaatgattg attctaaacc accagaaaag caatttcatt ttctatttgg agtttatacc
     3181 aagaaagtct tctagatatc actgatcctt ttgaatacat ttttctatat tgtgatacca
     3241 gaaattgttc aacttttcac tctttggact gtttttaaag agccttttgt ttttttatgg
     3301 ggtggtttgt aaccccttca gcccagcctc cccccattta tactgacagg gtccccagca
     3361 ttcttcggga aatcctccaa tgactctgtc agctgtgttg ggggacaaag ccagcttaat
     3421 ggggcttccc tgctcctcct ctagtttata ccctttagat ggcagcagaa acttcataaa
     3481 ccagcccttt ctcagagcca gtgatgtaac tttatcagaa tgtcaggcag ggcggctgcc
     3541 ctgatccaga gaccccagga agatgtccct gtccctttgc tgagggtggt atggggaggc
     3601 agaggcctct gctaagaatg tagtattgtt ttccttcctc tctcctgttc tttctttttg
     3661 gagcttcttt agatcaaaga cataagaagt tgcttcagat atatctgata ctgtgaatgt
     3721 ttgaacatat ccgtggcctt caccttcctg ccctccctcc ccttttacct catcagaagc
     3781 agtggctctg ctaagtgctc cccccacctc ccatctcagg agagaccaaa actcacagaa
     3841 aaataggcac tttgggccaa aagcactgac cgcacatttt tagtggtgat ttggacaaag
     3901 aaagttggag agattttttt aaaggttttc tagttctggg aatgtgcact tcacacgagg
     3961 gagtggtgga gtttacctca gttggatcct gctaagaagt atttccagga gaacatccct
     4021 gagcctctct ctttaatcca ggggtgagag atgatgtgac tgagagagga ggcgatcgtg
     4081 gtccaggccg gcccctgcct gcagagaccc ttctggagtg tgggaattgg cttttagggg
     4141 ccacgctccc cacaaaaccc cacttgacaa ggggtacaaa caccagctcc actcatcccc
     4201 acttgccatc tgaggtctgt caggttttgt ggcttgatgt ttgcggtggg tttgggttta
     4261 attttttgtt tttgtttttg aaaatgagga ctgatgtccc caatcccact attcctggta
     4321 aagattaggg gacattttta ttcagtaggg cctctctgat cttccagctt gcttcccaca
     4381 aacagatcta cctacaagtt cttagaatcc tgattctagg acagaaagtg agcttcctga
     4441 ggtggacagt gggtcccagt cagcagtggc tgggggctcc agggcggtga gcaggagaga
     4501 agtctacagc ctctgctccc agcccgcagc acgtctccgg agtctctgct ggctgacctt
     4561 tgtttagaca aactcagttg gtttgaactg ttttcacgag tgtgcgtttt tctcttagta
     4621 cttacttgag actgttacta accaacaggt agctctctct gggcagggac aggaagagct
     4681 caggtgggat atgtgacagg cttcgggggg gaaggagagt gccctgtctc agggacagac
     4741 ggcctggggc atacggtctg gaacgatggg gcttttccag gccgtgccca agcccgagct
     4801 ttgttgccca gagcggtggt gaggttggaa atccagctca catcatatag gcatgcgatg
     4861 tgagctcacc tgccaatggc cagctgtcct gctggaagag ctgccggagc ttgcagagct
     4921 gcaacctgtg gaacgaagat ggggaaagga agagggctca gcatgcacgt caggaacctg
     4981 gcacactgag tattctgtgc catccagctc agtgtggcca ctttcactgc ctaggaccac
     5041 aaatcagggg cctgaacttc ccctcaacct gtcaccaact cacttcagcc tgcttccttg
     5101 tctataagtc ggaccagaag atctccaatg cccttctggc gctgagaagc catgatatgg
     5161 acaagccaac acttggaagg ggtgtccttc caagcctctt tccttttcct ccctctctgg
     5221 ttacagaact tggggtttgg caattgtttg gatctttttt tttctttctg caactgtgtg
     5281 tgtgcgtgtg tgtgaagaaa aacagactgt ccaggtggaa atggtgaaga ggggagaagc
     5341 gttcatttcc agtgtcaaca acttggcagt tttcctaaag tgactcagac acagcacagg
     5401 aacaactctc actgcaattt tatttttatc tcacttcaga aacaaagatt tcttccaagc
     5461 cacgtgaggt ctctgccacc cacctaccca acccacccac aaagcaggac ctgaatttat
     5521 ccgctgaggg cccacagagc ctggctgcag ggacctgtca gggcctctgc ccacccccag
     5581 tcccccaccg tgtgttgcgg ggcagctgag ggtgagggag caacagtcca cctcgggaaa
     5641 tggagccagg gctatggcct gaccaatacc aaggaaggct cgtgggaaat acctgtccag
     5701 gatcttagcc ccaggctggt tggttttaca gatctctctc aaatgtttta ttttggtgac
     5761 aaaaatgaag gagctttgta aatttaaaaa aaaaattatg aatcatatca agtagttgtt
     5821 tacatttctt gacaaaatag gaactatgcc agccgaatca aattggcaaa atccttagat
     5881 taaataggca ataattaggt ctgccgtttt ggccttttgt agttagagaa gtggtggtag
     5941 tgtttagata ctgtttggtc ttgcttcttg tattgcattt ttcaataa
//
LOCUS       XM_032647503            6106 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X4, mRNA.
ACCESSION   XM_032647503
VERSION     XM_032647503.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6106
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6106
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 41
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761583"
     CDS             69..3122
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X4"
                     /protein_id="XP_032503394.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKVEKTHIEVT
                     VPTSNGDQIQKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESV
                     PEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGVKKTSVLPSERKVGGPENISGIRTEE
                     VAAMTKGPSTNPDSEWEGPKHSIIPSKSQMTTPSESPQNFDFGSLSISSKETEEKEQG
                     AAGYLDIKEMSRGPSGECVGVEEQASALKSSISPASSQLQLTEKKAESSEEHVIPREP
                     VGEQNGSFLDSRVGNQFPTLIRSFQPPLVKTQTVTISDTANAVKSEIPTKDVPIVHTE
                     TKTITYEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTTQITKTVKGGISETRIEKR
                     IVITGDADIDHDQVLVQAIKEAKEQHPDMSVTKVVVHQETEISEE"
     misc_feature    300..>692
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    699..1271
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1254..1535
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1281..1283,1332..1334,1338..1340,1356..1358)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1368..1370,1383..1394,1497..1499,1509..1511,
                     1518..1523)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1497..1532
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1563..1694
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    2025..2171
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2784..3107
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 ggcggagggc gagaacgcgg cccggcccgg cccagccagg tctccgcccc atccggccca
       61 gcaacgtcat gacaacagag aagagtttag tggctgaggc tgaaaatcca cagcagcaac
      121 aacagaagga agagggtgag ggagccacaa actcgggtca acaggaaact cagctggaag
      181 aggctcctca agcagcagcc gagggagata atcagtgtga gcagaagctg aaaacatcca
      241 atggagacac tccaacacat gaagatttga ccaagaacaa ggagcggaca tcagaaaaca
      301 ggggcctgtc acggctgttc tcctcatttc tcaaaaggcc taaatctcag gtctctgagg
      361 aggaaggcaa agaagtagag tcagcgaaag agaaaggtga aggtcataaa gagatagaat
      421 ttggagccag tcttgacgaa gagatcattt taaaggcccc gattgcagct cctgagcctg
      481 agctcaaaac agacccatcc ttggatcttc attcattaag cagtgcagaa acacagcctg
      541 ctcaggaaga acacagagaa gatcccgatt ttcagactga ggaaggagga ggacttgaag
      601 actgctctaa aacagaagta aaagaagaaa gtcctgaatc agtagcagaa agagaattaa
      661 aagcttccca gaaatcgatc agaagacaca gaaacatgca ttgcaaggtt tctttgttgg
      721 atgacacagt ttatgaatgt gttgtggaga aacatgctaa gggacaagat ttacttaaac
      781 gagtatgtga acacctcaat cttttggaag aagactactt tagtctagcc atttgggata
      841 atgcaacctc taagacatgg ctggattctg ccaaagaaat aaaaaagcag gttcgtggtg
      901 tcccttggaa tttcacattt aatgtaaagt tttatccacc tgacccagca cagttaacag
      961 aagatataac aaggtattat ttatgtcttc aacttcggca ggacatagtt gcaggacgtc
     1021 tgccctgttc atttgcaacc ttagcattat taggttctta taccatccag tctgagctgg
     1081 gagactatga cccagaactc catggtgcag attatgttag tgattttaaa ctggccccaa
     1141 atcagaccaa ggaacttgaa gagaaggtca tggaactgca taagtcatac aggtccatga
     1201 ctccagctca ggctgacctg gaatttcttg agaatgccaa aaagttgtct atgtatggtg
     1261 ttgaccttca taaagcaaag gacttggagg gagtggatat catcctaggt gtctgctcta
     1321 gtggccttct ggtttacaaa gataagctga gaattaaccg ctttccttgg cccaaagtgc
     1381 tgaagatttc ttacaaacgt agcagctttt tcattaagat tcggcctgga gagcaagaac
     1441 agtatgaaag taccatcgga ttcaaacttc ccagttaccg agcagctaag aaattatgga
     1501 aggtctgtgt agagcatcac acgtttttca gactgacatc tacagacacc attcctaaaa
     1561 gcaaatttct tgccctggga tccaaatttc gatacagtgg ccgaactcag gctcagacca
     1621 ggcaagctag tgctctgatt gacaggcctg ccccacactt tgagcgtaca gcaagcaaac
     1681 gggcatcccg aagccttgat ggagcagcag ccgttgattc agcagaccga agtcctcggc
     1741 ccacctctgc accggccatt gctcagagtc aggccgcaga aggcagcgtc ccaggtgcac
     1801 ctgttaaaaa agcagtggtt tctaaaacac caaaggaaac agtgcaggtt gaagtgaaaa
     1861 aggaagaagt cccacctgag caacctgagc cagagctcac agaagtgtgg aaggtggaaa
     1921 aaacccacat cgaggtcaca gtacccacct caaatggtga ccaaatacag aaaaagagag
     1981 agagactaga tggtgaaaac atttatatca gacatagcaa tttaatgttg gaggatttag
     2041 acaaaagtca agaagagatc aaaaaacatc atgccagcat cagtgagctg aaaaagaact
     2101 tcatggaatc tgtaccagaa ccacagccta gtgaatggga taaacgctta tccactcact
     2161 ctccctttcg aacacttaac atcaatgggc aaatccctac aggagaagga gtgaagaaaa
     2221 cctctgtcct tccctcggaa agaaaggttg gtgggccaga gaatataagt ggcattcgca
     2281 cagaggaggt ggctgccatg accaaggggc catctaccaa ccctgactct gaatgggagg
     2341 gccccaagca ttcaataatt cctagtaaga gccaaatgac taccccgtcg gagtctccac
     2401 aaaactttga ctttggctcc ctctccataa gcagcaagga gacggaagag aaggagcagg
     2461 gggcagctgg ctatcttgat attaaggaaa tgtcgagagg tccaagtggg gaatgtgtag
     2521 gagtggagga acaagccagt gccttaaagt cctcaatatc accagcttcc tctcagctgc
     2581 aacttactga aaaaaaagca gagagtagtg aagaacatgt tataccaaga gagcctgttg
     2641 gagagcaaaa tggatcattt cttgactctc gtgtgggtaa ccagttcccc accctcattc
     2701 gaagtttcca gcctcccctg gtgaagactc agaccgtcac catctcagac actgccaatg
     2761 ctgtgaaaag tgaaattcca accaaagacg tccctatagt ccacactgag accaagacca
     2821 tcacttatga ggctgcccag actgacgaca gcaacgggga cttggaccca ggagtcttgc
     2881 tgacagctca gaccatcaca tctgagacca ccagcagcac caccacaact caaattacca
     2941 agactgtaaa aggtgggatt tcagagaccc ggattgaaaa gcgaattgtg atcacaggag
     3001 atgccgatat tgaccatgat caggtcctcg tacaggccat caaggaggca aaggagcagc
     3061 acccagacat gtcagtgacc aaggtggtcg tccatcagga gaccgagatc tctgaggagt
     3121 gagctcagga actgtcctac cctcccccct cccccggctc cctgcccatc tcccgtccca
     3181 gagaaaacca gcggaatgat aaagaagcta acctgcaata gtcagacttc agacttttaa
     3241 aatgattgat tctaaaccac cagaaaagca atttcatttt ctatttggag tttataccaa
     3301 gaaagtcttc tagatatcac tgatcctttt gaatacattt ttctatattg tgataccaga
     3361 aattgttcaa cttttcactc tttggactgt ttttaaagag ccttttgttt ttttatgggg
     3421 tggtttgtaa ccccttcagc ccagcctccc cccatttata ctgacagggt ccccagcatt
     3481 cttcgggaaa tcctccaatg actctgtcag ctgtgttggg ggacaaagcc agcttaatgg
     3541 ggcttccctg ctcctcctct agtttatacc ctttagatgg cagcagaaac ttcataaacc
     3601 agccctttct cagagccagt gatgtaactt tatcagaatg tcaggcaggg cggctgccct
     3661 gatccagaga ccccaggaag atgtccctgt ccctttgctg agggtggtat ggggaggcag
     3721 aggcctctgc taagaatgta gtattgtttt ccttcctctc tcctgttctt tctttttgga
     3781 gcttctttag atcaaagaca taagaagttg cttcagatat atctgatact gtgaatgttt
     3841 gaacatatcc gtggccttca ccttcctgcc ctccctcccc ttttacctca tcagaagcag
     3901 tggctctgct aagtgctccc cccacctccc atctcaggag agaccaaaac tcacagaaaa
     3961 ataggcactt tgggccaaaa gcactgaccg cacattttta gtggtgattt ggacaaagaa
     4021 agttggagag atttttttaa aggttttcta gttctgggaa tgtgcacttc acacgaggga
     4081 gtggtggagt ttacctcagt tggatcctgc taagaagtat ttccaggaga acatccctga
     4141 gcctctctct ttaatccagg ggtgagagat gatgtgactg agagaggagg cgatcgtggt
     4201 ccaggccggc ccctgcctgc agagaccctt ctggagtgtg ggaattggct tttaggggcc
     4261 acgctcccca caaaacccca cttgacaagg ggtacaaaca ccagctccac tcatccccac
     4321 ttgccatctg aggtctgtca ggttttgtgg cttgatgttt gcggtgggtt tgggtttaat
     4381 tttttgtttt tgtttttgaa aatgaggact gatgtcccca atcccactat tcctggtaaa
     4441 gattagggga catttttatt cagtagggcc tctctgatct tccagcttgc ttcccacaaa
     4501 cagatctacc tacaagttct tagaatcctg attctaggac agaaagtgag cttcctgagg
     4561 tggacagtgg gtcccagtca gcagtggctg ggggctccag ggcggtgagc aggagagaag
     4621 tctacagcct ctgctcccag cccgcagcac gtctccggag tctctgctgg ctgacctttg
     4681 tttagacaaa ctcagttggt ttgaactgtt ttcacgagtg tgcgtttttc tcttagtact
     4741 tacttgagac tgttactaac caacaggtag ctctctctgg gcagggacag gaagagctca
     4801 ggtgggatat gtgacaggct tcggggggga aggagagtgc cctgtctcag ggacagacgg
     4861 cctggggcat acggtctgga acgatggggc ttttccaggc cgtgcccaag cccgagcttt
     4921 gttgcccaga gcggtggtga ggttggaaat ccagctcaca tcatataggc atgcgatgtg
     4981 agctcacctg ccaatggcca gctgtcctgc tggaagagct gccggagctt gcagagctgc
     5041 aacctgtgga acgaagatgg ggaaaggaag agggctcagc atgcacgtca ggaacctggc
     5101 acactgagta ttctgtgcca tccagctcag tgtggccact ttcactgcct aggaccacaa
     5161 atcaggggcc tgaacttccc ctcaacctgt caccaactca cttcagcctg cttccttgtc
     5221 tataagtcgg accagaagat ctccaatgcc cttctggcgc tgagaagcca tgatatggac
     5281 aagccaacac ttggaagggg tgtccttcca agcctctttc cttttcctcc ctctctggtt
     5341 acagaacttg gggtttggca attgtttgga tctttttttt tctttctgca actgtgtgtg
     5401 tgcgtgtgtg tgaagaaaaa cagactgtcc aggtggaaat ggtgaagagg ggagaagcgt
     5461 tcatttccag tgtcaacaac ttggcagttt tcctaaagtg actcagacac agcacaggaa
     5521 caactctcac tgcaatttta tttttatctc acttcagaaa caaagatttc ttccaagcca
     5581 cgtgaggtct ctgccaccca cctacccaac ccacccacaa agcaggacct gaatttatcc
     5641 gctgagggcc cacagagcct ggctgcaggg acctgtcagg gcctctgccc acccccagtc
     5701 ccccaccgtg tgttgcgggg cagctgaggg tgagggagca acagtccacc tcgggaaatg
     5761 gagccagggc tatggcctga ccaataccaa ggaaggctcg tgggaaatac ctgtccagga
     5821 tcttagcccc aggctggttg gttttacaga tctctctcaa atgttttatt ttggtgacaa
     5881 aaatgaagga gctttgtaaa tttaaaaaaa aaattatgaa tcatatcaag tagttgttta
     5941 catttcttga caaaatagga actatgccag ccgaatcaaa ttggcaaaat ccttagatta
     6001 aataggcaat aattaggtct gccgttttgg ccttttgtag ttagagaagt ggtggtagtg
     6061 tttagatact gtttggtctt gcttcttgta ttgcattttt caataa
//
LOCUS       XM_032647512            5925 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X5, mRNA.
ACCESSION   XM_032647512
VERSION     XM_032647512.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5925
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5925
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 33
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..2941
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X5"
                     /protein_id="XP_032503403.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKDLDKSQEEI
                     KKHHASISELKKNFMESVPEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGVKKTSVLP
                     SERKVGGPENISGIRTEEVAAMTKGPSTNPDSEWEGPKHSIIPSKSQMTTPSESPQNF
                     DFGSLSISSKETEEKEQGAAGYLDIKEMSRGPSGECVGVEEQASALKSSISPASSQLQ
                     LTEKKAESSEEHVIPREPVGEQNGSFLDSRVGNQFPTLIRSFQPPLVKTQTVTISDTA
                     NAVKSEIPTKDVPIVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTT
                     QITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSVTKVVVHQET
                     EISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1850..1990
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2603..2926
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa gtcctcggcc
     1681 cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc caggtgcacc
     1741 tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg aagtgaaaaa
     1801 ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga aggatttaga
     1861 caaaagtcaa gaagagatca aaaaacatca tgccagcatc agtgagctga aaaagaactt
     1921 catggaatct gtaccagaac cacagcctag tgaatgggat aaacgcttat ccactcactc
     1981 tccctttcga acacttaaca tcaatgggca aatccctaca ggagaaggag tgaagaaaac
     2041 ctctgtcctt ccctcggaaa gaaaggttgg tgggccagag aatataagtg gcattcgcac
     2101 agaggaggtg gctgccatga ccaaggggcc atctaccaac cctgactctg aatgggaggg
     2161 ccccaagcat tcaataattc ctagtaagag ccaaatgact accccgtcgg agtctccaca
     2221 aaactttgac tttggctccc tctccataag cagcaaggag acggaagaga aggagcaggg
     2281 ggcagctggc tatcttgata ttaaggaaat gtcgagaggt ccaagtgggg aatgtgtagg
     2341 agtggaggaa caagccagtg ccttaaagtc ctcaatatca ccagcttcct ctcagctgca
     2401 acttactgaa aaaaaagcag agagtagtga agaacatgtt ataccaagag agcctgttgg
     2461 agagcaaaat ggatcatttc ttgactctcg tgtgggtaac cagttcccca ccctcattcg
     2521 aagtttccag cctcccctgg tgaagactca gaccgtcacc atctcagaca ctgccaatgc
     2581 tgtgaaaagt gaaattccaa ccaaagacgt ccctatagtc cacactgaga ccaagaccat
     2641 cacttatgag gctgcccaga ctgacgacag caacggggac ttggacccag gagtcttgct
     2701 gacagctcag accatcacat ctgagaccac cagcagcacc accacaactc aaattaccaa
     2761 gactgtaaaa ggtgggattt cagagacccg gattgaaaag cgaattgtga tcacaggaga
     2821 tgccgatatt gaccatgatc aggtcctcgt acaggccatc aaggaggcaa aggagcagca
     2881 cccagacatg tcagtgacca aggtggtcgt ccatcaggag accgagatct ctgaggagtg
     2941 agctcaggaa ctgtcctacc ctcccccctc ccccggctcc ctgcccatct cccgtcccag
     3001 agaaaaccag cggaatgata aagaagctaa cctgcaatag tcagacttca gacttttaaa
     3061 atgattgatt ctaaaccacc agaaaagcaa tttcattttc tatttggagt ttataccaag
     3121 aaagtcttct agatatcact gatccttttg aatacatttt tctatattgt gataccagaa
     3181 attgttcaac ttttcactct ttggactgtt tttaaagagc cttttgtttt tttatggggt
     3241 ggtttgtaac cccttcagcc cagcctcccc ccatttatac tgacagggtc cccagcattc
     3301 ttcgggaaat cctccaatga ctctgtcagc tgtgttgggg gacaaagcca gcttaatggg
     3361 gcttccctgc tcctcctcta gtttataccc tttagatggc agcagaaact tcataaacca
     3421 gccctttctc agagccagtg atgtaacttt atcagaatgt caggcagggc ggctgccctg
     3481 atccagagac cccaggaaga tgtccctgtc cctttgctga gggtggtatg gggaggcaga
     3541 ggcctctgct aagaatgtag tattgttttc cttcctctct cctgttcttt ctttttggag
     3601 cttctttaga tcaaagacat aagaagttgc ttcagatata tctgatactg tgaatgtttg
     3661 aacatatccg tggccttcac cttcctgccc tccctcccct tttacctcat cagaagcagt
     3721 ggctctgcta agtgctcccc ccacctccca tctcaggaga gaccaaaact cacagaaaaa
     3781 taggcacttt gggccaaaag cactgaccgc acatttttag tggtgatttg gacaaagaaa
     3841 gttggagaga tttttttaaa ggttttctag ttctgggaat gtgcacttca cacgagggag
     3901 tggtggagtt tacctcagtt ggatcctgct aagaagtatt tccaggagaa catccctgag
     3961 cctctctctt taatccaggg gtgagagatg atgtgactga gagaggaggc gatcgtggtc
     4021 caggccggcc cctgcctgca gagacccttc tggagtgtgg gaattggctt ttaggggcca
     4081 cgctccccac aaaaccccac ttgacaaggg gtacaaacac cagctccact catccccact
     4141 tgccatctga ggtctgtcag gttttgtggc ttgatgtttg cggtgggttt gggtttaatt
     4201 ttttgttttt gtttttgaaa atgaggactg atgtccccaa tcccactatt cctggtaaag
     4261 attaggggac atttttattc agtagggcct ctctgatctt ccagcttgct tcccacaaac
     4321 agatctacct acaagttctt agaatcctga ttctaggaca gaaagtgagc ttcctgaggt
     4381 ggacagtggg tcccagtcag cagtggctgg gggctccagg gcggtgagca ggagagaagt
     4441 ctacagcctc tgctcccagc ccgcagcacg tctccggagt ctctgctggc tgacctttgt
     4501 ttagacaaac tcagttggtt tgaactgttt tcacgagtgt gcgtttttct cttagtactt
     4561 acttgagact gttactaacc aacaggtagc tctctctggg cagggacagg aagagctcag
     4621 gtgggatatg tgacaggctt cgggggggaa ggagagtgcc ctgtctcagg gacagacggc
     4681 ctggggcata cggtctggaa cgatggggct tttccaggcc gtgcccaagc ccgagctttg
     4741 ttgcccagag cggtggtgag gttggaaatc cagctcacat catataggca tgcgatgtga
     4801 gctcacctgc caatggccag ctgtcctgct ggaagagctg ccggagcttg cagagctgca
     4861 acctgtggaa cgaagatggg gaaaggaaga gggctcagca tgcacgtcag gaacctggca
     4921 cactgagtat tctgtgccat ccagctcagt gtggccactt tcactgccta ggaccacaaa
     4981 tcaggggcct gaacttcccc tcaacctgtc accaactcac ttcagcctgc ttccttgtct
     5041 ataagtcgga ccagaagatc tccaatgccc ttctggcgct gagaagccat gatatggaca
     5101 agccaacact tggaaggggt gtccttccaa gcctctttcc ttttcctccc tctctggtta
     5161 cagaacttgg ggtttggcaa ttgtttggat cttttttttt ctttctgcaa ctgtgtgtgt
     5221 gcgtgtgtgt gaagaaaaac agactgtcca ggtggaaatg gtgaagaggg gagaagcgtt
     5281 catttccagt gtcaacaact tggcagtttt cctaaagtga ctcagacaca gcacaggaac
     5341 aactctcact gcaattttat ttttatctca cttcagaaac aaagatttct tccaagccac
     5401 gtgaggtctc tgccacccac ctacccaacc cacccacaaa gcaggacctg aatttatccg
     5461 ctgagggccc acagagcctg gctgcaggga cctgtcaggg cctctgccca cccccagtcc
     5521 cccaccgtgt gttgcggggc agctgagggt gagggagcaa cagtccacct cgggaaatgg
     5581 agccagggct atggcctgac caataccaag gaaggctcgt gggaaatacc tgtccaggat
     5641 cttagcccca ggctggttgg ttttacagat ctctctcaaa tgttttattt tggtgacaaa
     5701 aatgaaggag ctttgtaaat ttaaaaaaaa aattatgaat catatcaagt agttgtttac
     5761 atttcttgac aaaataggaa ctatgccagc cgaatcaaat tggcaaaatc cttagattaa
     5821 ataggcaata attaggtctg ccgttttggc cttttgtagt tagagaagtg gtggtagtgt
     5881 ttagatactg tttggtcttg cttcttgtat tgcatttttc aataa
//
LOCUS       XM_032647523            5922 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X6, mRNA.
ACCESSION   XM_032647523
VERSION     XM_032647523.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5922
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5922
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 34
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..2938
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X6"
                     /protein_id="XP_032503414.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAVDSADRSPRPTSAPAIAQS
                     QAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKDLDKSQEEIK
                     KHHASISELKKNFMESVPEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGVKKTSVLPS
                     ERKVGGPENISGIRTEEVAAMTKGPSTNPDSEWEGPKHSIIPSKSQMTTPSESPQNFD
                     FGSLSISSKETEEKEQGAAGYLDIKEMSRGPSGECVGVEEQASALKSSISPASSQLQL
                     TEKKAESSEEHVIPREPVGEQNGSFLDSRVGNQFPTLIRSFQPPLVKTQTVTISDTAN
                     AVKSEIPTKDVPIVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTTQ
                     ITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSVTKVVVHQETE
                     ISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1847..1987
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2600..2923
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagccgt tgattcagca gaccgaagtc ctcggcccac
     1681 ctctgcaccg gccattgctc agagtcaggc cgcagaaggc agcgtcccag gtgcacctgt
     1741 taaaaaagca gtggtttcta aaacaccaaa ggaaacagtg caggttgaag tgaaaaagga
     1801 agaagtccca cctgagcaac ctgagccaga gctcacagaa gtgtggaagg atttagacaa
     1861 aagtcaagaa gagatcaaaa aacatcatgc cagcatcagt gagctgaaaa agaacttcat
     1921 ggaatctgta ccagaaccac agcctagtga atgggataaa cgcttatcca ctcactctcc
     1981 ctttcgaaca cttaacatca atgggcaaat ccctacagga gaaggagtga agaaaacctc
     2041 tgtccttccc tcggaaagaa aggttggtgg gccagagaat ataagtggca ttcgcacaga
     2101 ggaggtggct gccatgacca aggggccatc taccaaccct gactctgaat gggagggccc
     2161 caagcattca ataattccta gtaagagcca aatgactacc ccgtcggagt ctccacaaaa
     2221 ctttgacttt ggctccctct ccataagcag caaggagacg gaagagaagg agcagggggc
     2281 agctggctat cttgatatta aggaaatgtc gagaggtcca agtggggaat gtgtaggagt
     2341 ggaggaacaa gccagtgcct taaagtcctc aatatcacca gcttcctctc agctgcaact
     2401 tactgaaaaa aaagcagaga gtagtgaaga acatgttata ccaagagagc ctgttggaga
     2461 gcaaaatgga tcatttcttg actctcgtgt gggtaaccag ttccccaccc tcattcgaag
     2521 tttccagcct cccctggtga agactcagac cgtcaccatc tcagacactg ccaatgctgt
     2581 gaaaagtgaa attccaacca aagacgtccc tatagtccac actgagacca agaccatcac
     2641 ttatgaggct gcccagactg acgacagcaa cggggacttg gacccaggag tcttgctgac
     2701 agctcagacc atcacatctg agaccaccag cagcaccacc acaactcaaa ttaccaagac
     2761 tgtaaaaggt gggatttcag agacccggat tgaaaagcga attgtgatca caggagatgc
     2821 cgatattgac catgatcagg tcctcgtaca ggccatcaag gaggcaaagg agcagcaccc
     2881 agacatgtca gtgaccaagg tggtcgtcca tcaggagacc gagatctctg aggagtgagc
     2941 tcaggaactg tcctaccctc ccccctcccc cggctccctg cccatctccc gtcccagaga
     3001 aaaccagcgg aatgataaag aagctaacct gcaatagtca gacttcagac ttttaaaatg
     3061 attgattcta aaccaccaga aaagcaattt cattttctat ttggagttta taccaagaaa
     3121 gtcttctaga tatcactgat ccttttgaat acatttttct atattgtgat accagaaatt
     3181 gttcaacttt tcactctttg gactgttttt aaagagcctt ttgttttttt atggggtggt
     3241 ttgtaacccc ttcagcccag cctcccccca tttatactga cagggtcccc agcattcttc
     3301 gggaaatcct ccaatgactc tgtcagctgt gttgggggac aaagccagct taatggggct
     3361 tccctgctcc tcctctagtt tatacccttt agatggcagc agaaacttca taaaccagcc
     3421 ctttctcaga gccagtgatg taactttatc agaatgtcag gcagggcggc tgccctgatc
     3481 cagagacccc aggaagatgt ccctgtccct ttgctgaggg tggtatgggg aggcagaggc
     3541 ctctgctaag aatgtagtat tgttttcctt cctctctcct gttctttctt tttggagctt
     3601 ctttagatca aagacataag aagttgcttc agatatatct gatactgtga atgtttgaac
     3661 atatccgtgg ccttcacctt cctgccctcc ctcccctttt acctcatcag aagcagtggc
     3721 tctgctaagt gctcccccca cctcccatct caggagagac caaaactcac agaaaaatag
     3781 gcactttggg ccaaaagcac tgaccgcaca tttttagtgg tgatttggac aaagaaagtt
     3841 ggagagattt ttttaaaggt tttctagttc tgggaatgtg cacttcacac gagggagtgg
     3901 tggagtttac ctcagttgga tcctgctaag aagtatttcc aggagaacat ccctgagcct
     3961 ctctctttaa tccaggggtg agagatgatg tgactgagag aggaggcgat cgtggtccag
     4021 gccggcccct gcctgcagag acccttctgg agtgtgggaa ttggctttta ggggccacgc
     4081 tccccacaaa accccacttg acaaggggta caaacaccag ctccactcat ccccacttgc
     4141 catctgaggt ctgtcaggtt ttgtggcttg atgtttgcgg tgggtttggg tttaattttt
     4201 tgtttttgtt tttgaaaatg aggactgatg tccccaatcc cactattcct ggtaaagatt
     4261 aggggacatt tttattcagt agggcctctc tgatcttcca gcttgcttcc cacaaacaga
     4321 tctacctaca agttcttaga atcctgattc taggacagaa agtgagcttc ctgaggtgga
     4381 cagtgggtcc cagtcagcag tggctggggg ctccagggcg gtgagcagga gagaagtcta
     4441 cagcctctgc tcccagcccg cagcacgtct ccggagtctc tgctggctga cctttgttta
     4501 gacaaactca gttggtttga actgttttca cgagtgtgcg tttttctctt agtacttact
     4561 tgagactgtt actaaccaac aggtagctct ctctgggcag ggacaggaag agctcaggtg
     4621 ggatatgtga caggcttcgg gggggaagga gagtgccctg tctcagggac agacggcctg
     4681 gggcatacgg tctggaacga tggggctttt ccaggccgtg cccaagcccg agctttgttg
     4741 cccagagcgg tggtgaggtt ggaaatccag ctcacatcat ataggcatgc gatgtgagct
     4801 cacctgccaa tggccagctg tcctgctgga agagctgccg gagcttgcag agctgcaacc
     4861 tgtggaacga agatggggaa aggaagaggg ctcagcatgc acgtcaggaa cctggcacac
     4921 tgagtattct gtgccatcca gctcagtgtg gccactttca ctgcctagga ccacaaatca
     4981 ggggcctgaa cttcccctca acctgtcacc aactcacttc agcctgcttc cttgtctata
     5041 agtcggacca gaagatctcc aatgcccttc tggcgctgag aagccatgat atggacaagc
     5101 caacacttgg aaggggtgtc cttccaagcc tctttccttt tcctccctct ctggttacag
     5161 aacttggggt ttggcaattg tttggatctt tttttttctt tctgcaactg tgtgtgtgcg
     5221 tgtgtgtgaa gaaaaacaga ctgtccaggt ggaaatggtg aagaggggag aagcgttcat
     5281 ttccagtgtc aacaacttgg cagttttcct aaagtgactc agacacagca caggaacaac
     5341 tctcactgca attttatttt tatctcactt cagaaacaaa gatttcttcc aagccacgtg
     5401 aggtctctgc cacccaccta cccaacccac ccacaaagca ggacctgaat ttatccgctg
     5461 agggcccaca gagcctggct gcagggacct gtcagggcct ctgcccaccc ccagtccccc
     5521 accgtgtgtt gcggggcagc tgagggtgag ggagcaacag tccacctcgg gaaatggagc
     5581 cagggctatg gcctgaccaa taccaaggaa ggctcgtggg aaatacctgt ccaggatctt
     5641 agccccaggc tggttggttt tacagatctc tctcaaatgt tttattttgg tgacaaaaat
     5701 gaaggagctt tgtaaattta aaaaaaaaat tatgaatcat atcaagtagt tgtttacatt
     5761 tcttgacaaa ataggaacta tgccagccga atcaaattgg caaaatcctt agattaaata
     5821 ggcaataatt aggtctgccg ttttggcctt ttgtagttag agaagtggtg gtagtgttta
     5881 gatactgttt ggtcttgctt cttgtattgc atttttcaat aa
//
LOCUS       XM_032647532            6175 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X7, mRNA.
ACCESSION   XM_032647532
VERSION     XM_032647532.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6175
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6175
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 40
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             765..3191
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X7"
                     /protein_id="XP_032503423.1"
                     /db_xref="GeneID:116761583"
                     /translation="MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSL
                     AIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQ
                     DIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGADYVSDFKLAPNQTKELEEKVME
                     LHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKL
                     RINRFPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHT
                     FFRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSL
                     DGAAAVDSADRSPRPTSAPAIAQSQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEV
                     PPEQPEPELTEVWKVEKTHIEVTVPTSNGDQIQKKRERLDGENIYIRHSNLMLEDLDK
                     SQEEIKKHHASISELKKNFMESVPEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGVKK
                     TSVLPSERKVGGPENISGIRTEEVAAMTKGPSTNPDSEWEGPKHSIIPSKSQMTTPSE
                     SPQNFDFGSLSISSKETEEKEQGAAGYLDIKEMSRGPSGECVGVEEQASALKSSISPA
                     SSQLQLTEKKAESSEEHVIPREPVGEQNGSFLDSRVGNQFPTLIRSFQPPLVKTQTVT
                     ISDTANAVKSEIPTKDVPIVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSETTS
                     STTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSVTKVV
                     VHQETEISEE"
     misc_feature    768..1340
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1323..1604
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1350..1352,1401..1403,1407..1409,1425..1427)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1437..1439,1452..1463,1566..1568,1578..1580,
                     1587..1592)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1566..1601
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1632..1763
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    2094..2240
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2853..3176
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 ggggcctcaa gccggagttg ccctgtcagt gcaggtggag gcccccggcg gggcaaagtg
       61 gcaggaacct cttaaagggc gagagtggcg gagggcgaga acgcggcccg gcccggccca
      121 gccaggtctc cgccccatcc ggcccagaga agagtttagt ggctgaggct gaaaatccac
      181 agcagcaaca acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc
      241 agctggaaga ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga
      301 aaacatccaa tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat
      361 cagaaaacag gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg
      421 tctctgagga ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag
      481 agatagaatt tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc
      541 ctgagcctga gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa
      601 cacagcctgc tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag
      661 gacttgaaga ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa
      721 gagaattaaa agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt
      781 ctttgttgga tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt
      841 tacttaaacg agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca
      901 tttgggataa tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg
      961 ttcgtggtgt cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac
     1021 agttaacaga agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg
     1081 caggacgtct gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt
     1141 ctgagctggg agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac
     1201 tggccccaaa tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca
     1261 ggtccatgac tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta
     1321 tgtatggtgt tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg
     1381 tctgctctag tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc
     1441 ccaaagtgct gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag
     1501 agcaagaaca gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga
     1561 aattatggaa ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca
     1621 ttcctaaaag caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg
     1681 ctcagaccag gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag
     1741 caagcaaacg ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa
     1801 gtcctcggcc cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc
     1861 caggtgcacc tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg
     1921 aagtgaaaaa ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga
     1981 aggtggaaaa aacccacatc gaggtcacag tacccacctc aaatggtgac caaatacaga
     2041 aaaagagaga gagactagat ggtgaaaaca tttatatcag acatagcaat ttaatgttgg
     2101 aggatttaga caaaagtcaa gaagagatca aaaaacatca tgccagcatc agtgagctga
     2161 aaaagaactt catggaatct gtaccagaac cacagcctag tgaatgggat aaacgcttat
     2221 ccactcactc tccctttcga acacttaaca tcaatgggca aatccctaca ggagaaggag
     2281 tgaagaaaac ctctgtcctt ccctcggaaa gaaaggttgg tgggccagag aatataagtg
     2341 gcattcgcac agaggaggtg gctgccatga ccaaggggcc atctaccaac cctgactctg
     2401 aatgggaggg ccccaagcat tcaataattc ctagtaagag ccaaatgact accccgtcgg
     2461 agtctccaca aaactttgac tttggctccc tctccataag cagcaaggag acggaagaga
     2521 aggagcaggg ggcagctggc tatcttgata ttaaggaaat gtcgagaggt ccaagtgggg
     2581 aatgtgtagg agtggaggaa caagccagtg ccttaaagtc ctcaatatca ccagcttcct
     2641 ctcagctgca acttactgaa aaaaaagcag agagtagtga agaacatgtt ataccaagag
     2701 agcctgttgg agagcaaaat ggatcatttc ttgactctcg tgtgggtaac cagttcccca
     2761 ccctcattcg aagtttccag cctcccctgg tgaagactca gaccgtcacc atctcagaca
     2821 ctgccaatgc tgtgaaaagt gaaattccaa ccaaagacgt ccctatagtc cacactgaga
     2881 ccaagaccat cacttatgag gctgcccaga ctgacgacag caacggggac ttggacccag
     2941 gagtcttgct gacagctcag accatcacat ctgagaccac cagcagcacc accacaactc
     3001 aaattaccaa gactgtaaaa ggtgggattt cagagacccg gattgaaaag cgaattgtga
     3061 tcacaggaga tgccgatatt gaccatgatc aggtcctcgt acaggccatc aaggaggcaa
     3121 aggagcagca cccagacatg tcagtgacca aggtggtcgt ccatcaggag accgagatct
     3181 ctgaggagtg agctcaggaa ctgtcctacc ctcccccctc ccccggctcc ctgcccatct
     3241 cccgtcccag agaaaaccag cggaatgata aagaagctaa cctgcaatag tcagacttca
     3301 gacttttaaa atgattgatt ctaaaccacc agaaaagcaa tttcattttc tatttggagt
     3361 ttataccaag aaagtcttct agatatcact gatccttttg aatacatttt tctatattgt
     3421 gataccagaa attgttcaac ttttcactct ttggactgtt tttaaagagc cttttgtttt
     3481 tttatggggt ggtttgtaac cccttcagcc cagcctcccc ccatttatac tgacagggtc
     3541 cccagcattc ttcgggaaat cctccaatga ctctgtcagc tgtgttgggg gacaaagcca
     3601 gcttaatggg gcttccctgc tcctcctcta gtttataccc tttagatggc agcagaaact
     3661 tcataaacca gccctttctc agagccagtg atgtaacttt atcagaatgt caggcagggc
     3721 ggctgccctg atccagagac cccaggaaga tgtccctgtc cctttgctga gggtggtatg
     3781 gggaggcaga ggcctctgct aagaatgtag tattgttttc cttcctctct cctgttcttt
     3841 ctttttggag cttctttaga tcaaagacat aagaagttgc ttcagatata tctgatactg
     3901 tgaatgtttg aacatatccg tggccttcac cttcctgccc tccctcccct tttacctcat
     3961 cagaagcagt ggctctgcta agtgctcccc ccacctccca tctcaggaga gaccaaaact
     4021 cacagaaaaa taggcacttt gggccaaaag cactgaccgc acatttttag tggtgatttg
     4081 gacaaagaaa gttggagaga tttttttaaa ggttttctag ttctgggaat gtgcacttca
     4141 cacgagggag tggtggagtt tacctcagtt ggatcctgct aagaagtatt tccaggagaa
     4201 catccctgag cctctctctt taatccaggg gtgagagatg atgtgactga gagaggaggc
     4261 gatcgtggtc caggccggcc cctgcctgca gagacccttc tggagtgtgg gaattggctt
     4321 ttaggggcca cgctccccac aaaaccccac ttgacaaggg gtacaaacac cagctccact
     4381 catccccact tgccatctga ggtctgtcag gttttgtggc ttgatgtttg cggtgggttt
     4441 gggtttaatt ttttgttttt gtttttgaaa atgaggactg atgtccccaa tcccactatt
     4501 cctggtaaag attaggggac atttttattc agtagggcct ctctgatctt ccagcttgct
     4561 tcccacaaac agatctacct acaagttctt agaatcctga ttctaggaca gaaagtgagc
     4621 ttcctgaggt ggacagtggg tcccagtcag cagtggctgg gggctccagg gcggtgagca
     4681 ggagagaagt ctacagcctc tgctcccagc ccgcagcacg tctccggagt ctctgctggc
     4741 tgacctttgt ttagacaaac tcagttggtt tgaactgttt tcacgagtgt gcgtttttct
     4801 cttagtactt acttgagact gttactaacc aacaggtagc tctctctggg cagggacagg
     4861 aagagctcag gtgggatatg tgacaggctt cgggggggaa ggagagtgcc ctgtctcagg
     4921 gacagacggc ctggggcata cggtctggaa cgatggggct tttccaggcc gtgcccaagc
     4981 ccgagctttg ttgcccagag cggtggtgag gttggaaatc cagctcacat catataggca
     5041 tgcgatgtga gctcacctgc caatggccag ctgtcctgct ggaagagctg ccggagcttg
     5101 cagagctgca acctgtggaa cgaagatggg gaaaggaaga gggctcagca tgcacgtcag
     5161 gaacctggca cactgagtat tctgtgccat ccagctcagt gtggccactt tcactgccta
     5221 ggaccacaaa tcaggggcct gaacttcccc tcaacctgtc accaactcac ttcagcctgc
     5281 ttccttgtct ataagtcgga ccagaagatc tccaatgccc ttctggcgct gagaagccat
     5341 gatatggaca agccaacact tggaaggggt gtccttccaa gcctctttcc ttttcctccc
     5401 tctctggtta cagaacttgg ggtttggcaa ttgtttggat cttttttttt ctttctgcaa
     5461 ctgtgtgtgt gcgtgtgtgt gaagaaaaac agactgtcca ggtggaaatg gtgaagaggg
     5521 gagaagcgtt catttccagt gtcaacaact tggcagtttt cctaaagtga ctcagacaca
     5581 gcacaggaac aactctcact gcaattttat ttttatctca cttcagaaac aaagatttct
     5641 tccaagccac gtgaggtctc tgccacccac ctacccaacc cacccacaaa gcaggacctg
     5701 aatttatccg ctgagggccc acagagcctg gctgcaggga cctgtcaggg cctctgccca
     5761 cccccagtcc cccaccgtgt gttgcggggc agctgagggt gagggagcaa cagtccacct
     5821 cgggaaatgg agccagggct atggcctgac caataccaag gaaggctcgt gggaaatacc
     5881 tgtccaggat cttagcccca ggctggttgg ttttacagat ctctctcaaa tgttttattt
     5941 tggtgacaaa aatgaaggag ctttgtaaat ttaaaaaaaa aattatgaat catatcaagt
     6001 agttgtttac atttcttgac aaaataggaa ctatgccagc cgaatcaaat tggcaaaatc
     6061 cttagattaa ataggcaata attaggtctg ccgttttggc cttttgtagt tagagaagtg
     6121 gtggtagtgt ttagatactg tttggtcttg cttcttgtat tgcatttttc aataa
//
LOCUS       XM_032647541            5595 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X8, mRNA.
ACCESSION   XM_032647541
VERSION     XM_032647541.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5595
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5595
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 41
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..2611
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X8"
                     /protein_id="XP_032503432.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKVEKTHIEVT
                     VPTSNGDQIQKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESV
                     PEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGVKKTSVLPSERKVGGPEPPLVKTQTV
                     TISDTANAVKSEIPTKDVPIVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSETT
                     SSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSVTKV
                     VVHQETEISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1964..2110
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2273..2596
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa gtcctcggcc
     1681 cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc caggtgcacc
     1741 tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg aagtgaaaaa
     1801 ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga aggtggaaaa
     1861 aacccacatc gaggtcacag tacccacctc aaatggtgac caaatacaga aaaagagaga
     1921 gagactagat ggtgaaaaca tttatatcag acatagcaat ttaatgttgg aggatttaga
     1981 caaaagtcaa gaagagatca aaaaacatca tgccagcatc agtgagctga aaaagaactt
     2041 catggaatct gtaccagaac cacagcctag tgaatgggat aaacgcttat ccactcactc
     2101 tccctttcga acacttaaca tcaatgggca aatccctaca ggagaaggag tgaagaaaac
     2161 ctctgtcctt ccctcggaaa gaaaggttgg tgggccagag cctcccctgg tgaagactca
     2221 gaccgtcacc atctcagaca ctgccaatgc tgtgaaaagt gaaattccaa ccaaagacgt
     2281 ccctatagtc cacactgaga ccaagaccat cacttatgag gctgcccaga ctgacgacag
     2341 caacggggac ttggacccag gagtcttgct gacagctcag accatcacat ctgagaccac
     2401 cagcagcacc accacaactc aaattaccaa gactgtaaaa ggtgggattt cagagacccg
     2461 gattgaaaag cgaattgtga tcacaggaga tgccgatatt gaccatgatc aggtcctcgt
     2521 acaggccatc aaggaggcaa aggagcagca cccagacatg tcagtgacca aggtggtcgt
     2581 ccatcaggag accgagatct ctgaggagtg agctcaggaa ctgtcctacc ctcccccctc
     2641 ccccggctcc ctgcccatct cccgtcccag agaaaaccag cggaatgata aagaagctaa
     2701 cctgcaatag tcagacttca gacttttaaa atgattgatt ctaaaccacc agaaaagcaa
     2761 tttcattttc tatttggagt ttataccaag aaagtcttct agatatcact gatccttttg
     2821 aatacatttt tctatattgt gataccagaa attgttcaac ttttcactct ttggactgtt
     2881 tttaaagagc cttttgtttt tttatggggt ggtttgtaac cccttcagcc cagcctcccc
     2941 ccatttatac tgacagggtc cccagcattc ttcgggaaat cctccaatga ctctgtcagc
     3001 tgtgttgggg gacaaagcca gcttaatggg gcttccctgc tcctcctcta gtttataccc
     3061 tttagatggc agcagaaact tcataaacca gccctttctc agagccagtg atgtaacttt
     3121 atcagaatgt caggcagggc ggctgccctg atccagagac cccaggaaga tgtccctgtc
     3181 cctttgctga gggtggtatg gggaggcaga ggcctctgct aagaatgtag tattgttttc
     3241 cttcctctct cctgttcttt ctttttggag cttctttaga tcaaagacat aagaagttgc
     3301 ttcagatata tctgatactg tgaatgtttg aacatatccg tggccttcac cttcctgccc
     3361 tccctcccct tttacctcat cagaagcagt ggctctgcta agtgctcccc ccacctccca
     3421 tctcaggaga gaccaaaact cacagaaaaa taggcacttt gggccaaaag cactgaccgc
     3481 acatttttag tggtgatttg gacaaagaaa gttggagaga tttttttaaa ggttttctag
     3541 ttctgggaat gtgcacttca cacgagggag tggtggagtt tacctcagtt ggatcctgct
     3601 aagaagtatt tccaggagaa catccctgag cctctctctt taatccaggg gtgagagatg
     3661 atgtgactga gagaggaggc gatcgtggtc caggccggcc cctgcctgca gagacccttc
     3721 tggagtgtgg gaattggctt ttaggggcca cgctccccac aaaaccccac ttgacaaggg
     3781 gtacaaacac cagctccact catccccact tgccatctga ggtctgtcag gttttgtggc
     3841 ttgatgtttg cggtgggttt gggtttaatt ttttgttttt gtttttgaaa atgaggactg
     3901 atgtccccaa tcccactatt cctggtaaag attaggggac atttttattc agtagggcct
     3961 ctctgatctt ccagcttgct tcccacaaac agatctacct acaagttctt agaatcctga
     4021 ttctaggaca gaaagtgagc ttcctgaggt ggacagtggg tcccagtcag cagtggctgg
     4081 gggctccagg gcggtgagca ggagagaagt ctacagcctc tgctcccagc ccgcagcacg
     4141 tctccggagt ctctgctggc tgacctttgt ttagacaaac tcagttggtt tgaactgttt
     4201 tcacgagtgt gcgtttttct cttagtactt acttgagact gttactaacc aacaggtagc
     4261 tctctctggg cagggacagg aagagctcag gtgggatatg tgacaggctt cgggggggaa
     4321 ggagagtgcc ctgtctcagg gacagacggc ctggggcata cggtctggaa cgatggggct
     4381 tttccaggcc gtgcccaagc ccgagctttg ttgcccagag cggtggtgag gttggaaatc
     4441 cagctcacat catataggca tgcgatgtga gctcacctgc caatggccag ctgtcctgct
     4501 ggaagagctg ccggagcttg cagagctgca acctgtggaa cgaagatggg gaaaggaaga
     4561 gggctcagca tgcacgtcag gaacctggca cactgagtat tctgtgccat ccagctcagt
     4621 gtggccactt tcactgccta ggaccacaaa tcaggggcct gaacttcccc tcaacctgtc
     4681 accaactcac ttcagcctgc ttccttgtct ataagtcgga ccagaagatc tccaatgccc
     4741 ttctggcgct gagaagccat gatatggaca agccaacact tggaaggggt gtccttccaa
     4801 gcctctttcc ttttcctccc tctctggtta cagaacttgg ggtttggcaa ttgtttggat
     4861 cttttttttt ctttctgcaa ctgtgtgtgt gcgtgtgtgt gaagaaaaac agactgtcca
     4921 ggtggaaatg gtgaagaggg gagaagcgtt catttccagt gtcaacaact tggcagtttt
     4981 cctaaagtga ctcagacaca gcacaggaac aactctcact gcaattttat ttttatctca
     5041 cttcagaaac aaagatttct tccaagccac gtgaggtctc tgccacccac ctacccaacc
     5101 cacccacaaa gcaggacctg aatttatccg ctgagggccc acagagcctg gctgcaggga
     5161 cctgtcaggg cctctgccca cccccagtcc cccaccgtgt gttgcggggc agctgagggt
     5221 gagggagcaa cagtccacct cgggaaatgg agccagggct atggcctgac caataccaag
     5281 gaaggctcgt gggaaatacc tgtccaggat cttagcccca ggctggttgg ttttacagat
     5341 ctctctcaaa tgttttattt tggtgacaaa aatgaaggag ctttgtaaat ttaaaaaaaa
     5401 aattatgaat catatcaagt agttgtttac atttcttgac aaaataggaa ctatgccagc
     5461 cgaatcaaat tggcaaaatc cttagattaa ataggcaata attaggtctg ccgttttggc
     5521 cttttgtagt tagagaagtg gtggtagtgt ttagatactg tttggtcttg cttcttgtat
     5581 tgcatttttc aataa
//
LOCUS       XM_032647548            5544 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X9, mRNA.
ACCESSION   XM_032647548
VERSION     XM_032647548.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5544
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5544
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 16 long SRA reads, 42
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..2560
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X9"
                     /protein_id="XP_032503439.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKVEKTHIEVT
                     VPTSNGDQIQKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESV
                     PEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGPPLVKTQTVTISDTANAVKSEIPTKD
                     VPIVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTTQITKTVKGGIS
                     ETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSVTKVVVHQETEISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1964..2110
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2222..2545
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa gtcctcggcc
     1681 cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc caggtgcacc
     1741 tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg aagtgaaaaa
     1801 ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga aggtggaaaa
     1861 aacccacatc gaggtcacag tacccacctc aaatggtgac caaatacaga aaaagagaga
     1921 gagactagat ggtgaaaaca tttatatcag acatagcaat ttaatgttgg aggatttaga
     1981 caaaagtcaa gaagagatca aaaaacatca tgccagcatc agtgagctga aaaagaactt
     2041 catggaatct gtaccagaac cacagcctag tgaatgggat aaacgcttat ccactcactc
     2101 tccctttcga acacttaaca tcaatgggca aatccctaca ggagaaggac ctcccctggt
     2161 gaagactcag accgtcacca tctcagacac tgccaatgct gtgaaaagtg aaattccaac
     2221 caaagacgtc cctatagtcc acactgagac caagaccatc acttatgagg ctgcccagac
     2281 tgacgacagc aacggggact tggacccagg agtcttgctg acagctcaga ccatcacatc
     2341 tgagaccacc agcagcacca ccacaactca aattaccaag actgtaaaag gtgggatttc
     2401 agagacccgg attgaaaagc gaattgtgat cacaggagat gccgatattg accatgatca
     2461 ggtcctcgta caggccatca aggaggcaaa ggagcagcac ccagacatgt cagtgaccaa
     2521 ggtggtcgtc catcaggaga ccgagatctc tgaggagtga gctcaggaac tgtcctaccc
     2581 tcccccctcc cccggctccc tgcccatctc ccgtcccaga gaaaaccagc ggaatgataa
     2641 agaagctaac ctgcaatagt cagacttcag acttttaaaa tgattgattc taaaccacca
     2701 gaaaagcaat ttcattttct atttggagtt tataccaaga aagtcttcta gatatcactg
     2761 atccttttga atacattttt ctatattgtg ataccagaaa ttgttcaact tttcactctt
     2821 tggactgttt ttaaagagcc ttttgttttt ttatggggtg gtttgtaacc ccttcagccc
     2881 agcctccccc catttatact gacagggtcc ccagcattct tcgggaaatc ctccaatgac
     2941 tctgtcagct gtgttggggg acaaagccag cttaatgggg cttccctgct cctcctctag
     3001 tttataccct ttagatggca gcagaaactt cataaaccag ccctttctca gagccagtga
     3061 tgtaacttta tcagaatgtc aggcagggcg gctgccctga tccagagacc ccaggaagat
     3121 gtccctgtcc ctttgctgag ggtggtatgg ggaggcagag gcctctgcta agaatgtagt
     3181 attgttttcc ttcctctctc ctgttctttc tttttggagc ttctttagat caaagacata
     3241 agaagttgct tcagatatat ctgatactgt gaatgtttga acatatccgt ggccttcacc
     3301 ttcctgccct ccctcccctt ttacctcatc agaagcagtg gctctgctaa gtgctccccc
     3361 cacctcccat ctcaggagag accaaaactc acagaaaaat aggcactttg ggccaaaagc
     3421 actgaccgca catttttagt ggtgatttgg acaaagaaag ttggagagat ttttttaaag
     3481 gttttctagt tctgggaatg tgcacttcac acgagggagt ggtggagttt acctcagttg
     3541 gatcctgcta agaagtattt ccaggagaac atccctgagc ctctctcttt aatccagggg
     3601 tgagagatga tgtgactgag agaggaggcg atcgtggtcc aggccggccc ctgcctgcag
     3661 agacccttct ggagtgtggg aattggcttt taggggccac gctccccaca aaaccccact
     3721 tgacaagggg tacaaacacc agctccactc atccccactt gccatctgag gtctgtcagg
     3781 ttttgtggct tgatgtttgc ggtgggtttg ggtttaattt tttgtttttg tttttgaaaa
     3841 tgaggactga tgtccccaat cccactattc ctggtaaaga ttaggggaca tttttattca
     3901 gtagggcctc tctgatcttc cagcttgctt cccacaaaca gatctaccta caagttctta
     3961 gaatcctgat tctaggacag aaagtgagct tcctgaggtg gacagtgggt cccagtcagc
     4021 agtggctggg ggctccaggg cggtgagcag gagagaagtc tacagcctct gctcccagcc
     4081 cgcagcacgt ctccggagtc tctgctggct gacctttgtt tagacaaact cagttggttt
     4141 gaactgtttt cacgagtgtg cgtttttctc ttagtactta cttgagactg ttactaacca
     4201 acaggtagct ctctctgggc agggacagga agagctcagg tgggatatgt gacaggcttc
     4261 gggggggaag gagagtgccc tgtctcaggg acagacggcc tggggcatac ggtctggaac
     4321 gatggggctt ttccaggccg tgcccaagcc cgagctttgt tgcccagagc ggtggtgagg
     4381 ttggaaatcc agctcacatc atataggcat gcgatgtgag ctcacctgcc aatggccagc
     4441 tgtcctgctg gaagagctgc cggagcttgc agagctgcaa cctgtggaac gaagatgggg
     4501 aaaggaagag ggctcagcat gcacgtcagg aacctggcac actgagtatt ctgtgccatc
     4561 cagctcagtg tggccacttt cactgcctag gaccacaaat caggggcctg aacttcccct
     4621 caacctgtca ccaactcact tcagcctgct tccttgtcta taagtcggac cagaagatct
     4681 ccaatgccct tctggcgctg agaagccatg atatggacaa gccaacactt ggaaggggtg
     4741 tccttccaag cctctttcct tttcctccct ctctggttac agaacttggg gtttggcaat
     4801 tgtttggatc tttttttttc tttctgcaac tgtgtgtgtg cgtgtgtgtg aagaaaaaca
     4861 gactgtccag gtggaaatgg tgaagagggg agaagcgttc atttccagtg tcaacaactt
     4921 ggcagttttc ctaaagtgac tcagacacag cacaggaaca actctcactg caattttatt
     4981 tttatctcac ttcagaaaca aagatttctt ccaagccacg tgaggtctct gccacccacc
     5041 tacccaaccc acccacaaag caggacctga atttatccgc tgagggccca cagagcctgg
     5101 ctgcagggac ctgtcagggc ctctgcccac ccccagtccc ccaccgtgtg ttgcggggca
     5161 gctgagggtg agggagcaac agtccacctc gggaaatgga gccagggcta tggcctgacc
     5221 aataccaagg aaggctcgtg ggaaatacct gtccaggatc ttagccccag gctggttggt
     5281 tttacagatc tctctcaaat gttttatttt ggtgacaaaa atgaaggagc tttgtaaatt
     5341 taaaaaaaaa attatgaatc atatcaagta gttgtttaca tttcttgaca aaataggaac
     5401 tatgccagcc gaatcaaatt ggcaaaatcc ttagattaaa taggcaataa ttaggtctgc
     5461 cgttttggcc ttttgtagtt agagaagtgg tggtagtgtt tagatactgt ttggtcttgc
     5521 ttcttgtatt gcatttttca ataa
//
LOCUS       XM_032647556            5538 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X10, mRNA.
ACCESSION   XM_032647556
VERSION     XM_032647556.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5538
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5538
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 16 long SRA reads, 41
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..2554
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X10"
                     /protein_id="XP_032503447.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKKKRERLDGE
                     NIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESVPEPQPSEWDKRLSTHSPFR
                     TLNINGQIPTGEGVKKTSVLPSERKVGGPEPPLVKTQTVTISDTANAVKSEIPTKDVP
                     IVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTTQITKTVKGGISET
                     RIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSVTKVVVHQETEISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1907..2053
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2216..2539
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa gtcctcggcc
     1681 cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc caggtgcacc
     1741 tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg aagtgaaaaa
     1801 ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga agaaaaagag
     1861 agagagacta gatggtgaaa acatttatat cagacatagc aatttaatgt tggaggattt
     1921 agacaaaagt caagaagaga tcaaaaaaca tcatgccagc atcagtgagc tgaaaaagaa
     1981 cttcatggaa tctgtaccag aaccacagcc tagtgaatgg gataaacgct tatccactca
     2041 ctctcccttt cgaacactta acatcaatgg gcaaatccct acaggagaag gagtgaagaa
     2101 aacctctgtc cttccctcgg aaagaaaggt tggtgggcca gagcctcccc tggtgaagac
     2161 tcagaccgtc accatctcag acactgccaa tgctgtgaaa agtgaaattc caaccaaaga
     2221 cgtccctata gtccacactg agaccaagac catcacttat gaggctgccc agactgacga
     2281 cagcaacggg gacttggacc caggagtctt gctgacagct cagaccatca catctgagac
     2341 caccagcagc accaccacaa ctcaaattac caagactgta aaaggtggga tttcagagac
     2401 ccggattgaa aagcgaattg tgatcacagg agatgccgat attgaccatg atcaggtcct
     2461 cgtacaggcc atcaaggagg caaaggagca gcacccagac atgtcagtga ccaaggtggt
     2521 cgtccatcag gagaccgaga tctctgagga gtgagctcag gaactgtcct accctccccc
     2581 ctcccccggc tccctgccca tctcccgtcc cagagaaaac cagcggaatg ataaagaagc
     2641 taacctgcaa tagtcagact tcagactttt aaaatgattg attctaaacc accagaaaag
     2701 caatttcatt ttctatttgg agtttatacc aagaaagtct tctagatatc actgatcctt
     2761 ttgaatacat ttttctatat tgtgatacca gaaattgttc aacttttcac tctttggact
     2821 gtttttaaag agccttttgt ttttttatgg ggtggtttgt aaccccttca gcccagcctc
     2881 cccccattta tactgacagg gtccccagca ttcttcggga aatcctccaa tgactctgtc
     2941 agctgtgttg ggggacaaag ccagcttaat ggggcttccc tgctcctcct ctagtttata
     3001 ccctttagat ggcagcagaa acttcataaa ccagcccttt ctcagagcca gtgatgtaac
     3061 tttatcagaa tgtcaggcag ggcggctgcc ctgatccaga gaccccagga agatgtccct
     3121 gtccctttgc tgagggtggt atggggaggc agaggcctct gctaagaatg tagtattgtt
     3181 ttccttcctc tctcctgttc tttctttttg gagcttcttt agatcaaaga cataagaagt
     3241 tgcttcagat atatctgata ctgtgaatgt ttgaacatat ccgtggcctt caccttcctg
     3301 ccctccctcc ccttttacct catcagaagc agtggctctg ctaagtgctc cccccacctc
     3361 ccatctcagg agagaccaaa actcacagaa aaataggcac tttgggccaa aagcactgac
     3421 cgcacatttt tagtggtgat ttggacaaag aaagttggag agattttttt aaaggttttc
     3481 tagttctggg aatgtgcact tcacacgagg gagtggtgga gtttacctca gttggatcct
     3541 gctaagaagt atttccagga gaacatccct gagcctctct ctttaatcca ggggtgagag
     3601 atgatgtgac tgagagagga ggcgatcgtg gtccaggccg gcccctgcct gcagagaccc
     3661 ttctggagtg tgggaattgg cttttagggg ccacgctccc cacaaaaccc cacttgacaa
     3721 ggggtacaaa caccagctcc actcatcccc acttgccatc tgaggtctgt caggttttgt
     3781 ggcttgatgt ttgcggtggg tttgggttta attttttgtt tttgtttttg aaaatgagga
     3841 ctgatgtccc caatcccact attcctggta aagattaggg gacattttta ttcagtaggg
     3901 cctctctgat cttccagctt gcttcccaca aacagatcta cctacaagtt cttagaatcc
     3961 tgattctagg acagaaagtg agcttcctga ggtggacagt gggtcccagt cagcagtggc
     4021 tgggggctcc agggcggtga gcaggagaga agtctacagc ctctgctccc agcccgcagc
     4081 acgtctccgg agtctctgct ggctgacctt tgtttagaca aactcagttg gtttgaactg
     4141 ttttcacgag tgtgcgtttt tctcttagta cttacttgag actgttacta accaacaggt
     4201 agctctctct gggcagggac aggaagagct caggtgggat atgtgacagg cttcgggggg
     4261 gaaggagagt gccctgtctc agggacagac ggcctggggc atacggtctg gaacgatggg
     4321 gcttttccag gccgtgccca agcccgagct ttgttgccca gagcggtggt gaggttggaa
     4381 atccagctca catcatatag gcatgcgatg tgagctcacc tgccaatggc cagctgtcct
     4441 gctggaagag ctgccggagc ttgcagagct gcaacctgtg gaacgaagat ggggaaagga
     4501 agagggctca gcatgcacgt caggaacctg gcacactgag tattctgtgc catccagctc
     4561 agtgtggcca ctttcactgc ctaggaccac aaatcagggg cctgaacttc ccctcaacct
     4621 gtcaccaact cacttcagcc tgcttccttg tctataagtc ggaccagaag atctccaatg
     4681 cccttctggc gctgagaagc catgatatgg acaagccaac acttggaagg ggtgtccttc
     4741 caagcctctt tccttttcct ccctctctgg ttacagaact tggggtttgg caattgtttg
     4801 gatctttttt tttctttctg caactgtgtg tgtgcgtgtg tgtgaagaaa aacagactgt
     4861 ccaggtggaa atggtgaaga ggggagaagc gttcatttcc agtgtcaaca acttggcagt
     4921 tttcctaaag tgactcagac acagcacagg aacaactctc actgcaattt tatttttatc
     4981 tcacttcaga aacaaagatt tcttccaagc cacgtgaggt ctctgccacc cacctaccca
     5041 acccacccac aaagcaggac ctgaatttat ccgctgaggg cccacagagc ctggctgcag
     5101 ggacctgtca gggcctctgc ccacccccag tcccccaccg tgtgttgcgg ggcagctgag
     5161 ggtgagggag caacagtcca cctcgggaaa tggagccagg gctatggcct gaccaatacc
     5221 aaggaaggct cgtgggaaat acctgtccag gatcttagcc ccaggctggt tggttttaca
     5281 gatctctctc aaatgtttta ttttggtgac aaaaatgaag gagctttgta aatttaaaaa
     5341 aaaaattatg aatcatatca agtagttgtt tacatttctt gacaaaatag gaactatgcc
     5401 agccgaatca aattggcaaa atccttagat taaataggca ataattaggt ctgccgtttt
     5461 ggccttttgt agttagagaa gtggtggtag tgtttagata ctgtttggtc ttgcttcttg
     5521 tattgcattt ttcaataa
//
LOCUS       XM_032647565            5487 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X11, mRNA.
ACCESSION   XM_032647565
VERSION     XM_032647565.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5487
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5487
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 17 long SRA reads, 45
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..2503
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X11"
                     /protein_id="XP_032503456.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKKKRERLDGE
                     NIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESVPEPQPSEWDKRLSTHSPFR
                     TLNINGQIPTGEGPPLVKTQTVTISDTANAVKSEIPTKDVPIVHTETKTITYEAAQTD
                     DSNGDLDPGVLLTAQTITSETTSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHD
                     QVLVQAIKEAKEQHPDMSVTKVVVHQETEISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1907..2053
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2165..2488
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa gtcctcggcc
     1681 cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc caggtgcacc
     1741 tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg aagtgaaaaa
     1801 ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga agaaaaagag
     1861 agagagacta gatggtgaaa acatttatat cagacatagc aatttaatgt tggaggattt
     1921 agacaaaagt caagaagaga tcaaaaaaca tcatgccagc atcagtgagc tgaaaaagaa
     1981 cttcatggaa tctgtaccag aaccacagcc tagtgaatgg gataaacgct tatccactca
     2041 ctctcccttt cgaacactta acatcaatgg gcaaatccct acaggagaag gacctcccct
     2101 ggtgaagact cagaccgtca ccatctcaga cactgccaat gctgtgaaaa gtgaaattcc
     2161 aaccaaagac gtccctatag tccacactga gaccaagacc atcacttatg aggctgccca
     2221 gactgacgac agcaacgggg acttggaccc aggagtcttg ctgacagctc agaccatcac
     2281 atctgagacc accagcagca ccaccacaac tcaaattacc aagactgtaa aaggtgggat
     2341 ttcagagacc cggattgaaa agcgaattgt gatcacagga gatgccgata ttgaccatga
     2401 tcaggtcctc gtacaggcca tcaaggaggc aaaggagcag cacccagaca tgtcagtgac
     2461 caaggtggtc gtccatcagg agaccgagat ctctgaggag tgagctcagg aactgtccta
     2521 ccctcccccc tcccccggct ccctgcccat ctcccgtccc agagaaaacc agcggaatga
     2581 taaagaagct aacctgcaat agtcagactt cagactttta aaatgattga ttctaaacca
     2641 ccagaaaagc aatttcattt tctatttgga gtttatacca agaaagtctt ctagatatca
     2701 ctgatccttt tgaatacatt tttctatatt gtgataccag aaattgttca acttttcact
     2761 ctttggactg tttttaaaga gccttttgtt tttttatggg gtggtttgta accccttcag
     2821 cccagcctcc ccccatttat actgacaggg tccccagcat tcttcgggaa atcctccaat
     2881 gactctgtca gctgtgttgg gggacaaagc cagcttaatg gggcttccct gctcctcctc
     2941 tagtttatac cctttagatg gcagcagaaa cttcataaac cagccctttc tcagagccag
     3001 tgatgtaact ttatcagaat gtcaggcagg gcggctgccc tgatccagag accccaggaa
     3061 gatgtccctg tccctttgct gagggtggta tggggaggca gaggcctctg ctaagaatgt
     3121 agtattgttt tccttcctct ctcctgttct ttctttttgg agcttcttta gatcaaagac
     3181 ataagaagtt gcttcagata tatctgatac tgtgaatgtt tgaacatatc cgtggccttc
     3241 accttcctgc cctccctccc cttttacctc atcagaagca gtggctctgc taagtgctcc
     3301 ccccacctcc catctcagga gagaccaaaa ctcacagaaa aataggcact ttgggccaaa
     3361 agcactgacc gcacattttt agtggtgatt tggacaaaga aagttggaga gattttttta
     3421 aaggttttct agttctggga atgtgcactt cacacgaggg agtggtggag tttacctcag
     3481 ttggatcctg ctaagaagta tttccaggag aacatccctg agcctctctc tttaatccag
     3541 gggtgagaga tgatgtgact gagagaggag gcgatcgtgg tccaggccgg cccctgcctg
     3601 cagagaccct tctggagtgt gggaattggc ttttaggggc cacgctcccc acaaaacccc
     3661 acttgacaag gggtacaaac accagctcca ctcatcccca cttgccatct gaggtctgtc
     3721 aggttttgtg gcttgatgtt tgcggtgggt ttgggtttaa ttttttgttt ttgtttttga
     3781 aaatgaggac tgatgtcccc aatcccacta ttcctggtaa agattagggg acatttttat
     3841 tcagtagggc ctctctgatc ttccagcttg cttcccacaa acagatctac ctacaagttc
     3901 ttagaatcct gattctagga cagaaagtga gcttcctgag gtggacagtg ggtcccagtc
     3961 agcagtggct gggggctcca gggcggtgag caggagagaa gtctacagcc tctgctccca
     4021 gcccgcagca cgtctccgga gtctctgctg gctgaccttt gtttagacaa actcagttgg
     4081 tttgaactgt tttcacgagt gtgcgttttt ctcttagtac ttacttgaga ctgttactaa
     4141 ccaacaggta gctctctctg ggcagggaca ggaagagctc aggtgggata tgtgacaggc
     4201 ttcggggggg aaggagagtg ccctgtctca gggacagacg gcctggggca tacggtctgg
     4261 aacgatgggg cttttccagg ccgtgcccaa gcccgagctt tgttgcccag agcggtggtg
     4321 aggttggaaa tccagctcac atcatatagg catgcgatgt gagctcacct gccaatggcc
     4381 agctgtcctg ctggaagagc tgccggagct tgcagagctg caacctgtgg aacgaagatg
     4441 gggaaaggaa gagggctcag catgcacgtc aggaacctgg cacactgagt attctgtgcc
     4501 atccagctca gtgtggccac tttcactgcc taggaccaca aatcaggggc ctgaacttcc
     4561 cctcaacctg tcaccaactc acttcagcct gcttccttgt ctataagtcg gaccagaaga
     4621 tctccaatgc ccttctggcg ctgagaagcc atgatatgga caagccaaca cttggaaggg
     4681 gtgtccttcc aagcctcttt ccttttcctc cctctctggt tacagaactt ggggtttggc
     4741 aattgtttgg atcttttttt ttctttctgc aactgtgtgt gtgcgtgtgt gtgaagaaaa
     4801 acagactgtc caggtggaaa tggtgaagag gggagaagcg ttcatttcca gtgtcaacaa
     4861 cttggcagtt ttcctaaagt gactcagaca cagcacagga acaactctca ctgcaatttt
     4921 atttttatct cacttcagaa acaaagattt cttccaagcc acgtgaggtc tctgccaccc
     4981 acctacccaa cccacccaca aagcaggacc tgaatttatc cgctgagggc ccacagagcc
     5041 tggctgcagg gacctgtcag ggcctctgcc cacccccagt cccccaccgt gtgttgcggg
     5101 gcagctgagg gtgagggagc aacagtccac ctcgggaaat ggagccaggg ctatggcctg
     5161 accaatacca aggaaggctc gtgggaaata cctgtccagg atcttagccc caggctggtt
     5221 ggttttacag atctctctca aatgttttat tttggtgaca aaaatgaagg agctttgtaa
     5281 atttaaaaaa aaaattatga atcatatcaa gtagttgttt acatttcttg acaaaatagg
     5341 aactatgcca gccgaatcaa attggcaaaa tccttagatt aaataggcaa taattaggtc
     5401 tgccgttttg gccttttgta gttagagaag tggtggtagt gtttagatac tgtttggtct
     5461 tgcttcttgt attgcatttt tcaataa
//
LOCUS       XM_032647574            5424 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X12, mRNA.
ACCESSION   XM_032647574
VERSION     XM_032647574.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5424
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5424
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 16 long SRA reads, 38
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             8..2440
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X12"
                     /protein_id="XP_032503465.1"
                     /db_xref="GeneID:116761583"
                     /translation="MTTEKSLVAEAENPQQQQQKEEGEGATNSGQQETQLEEAPQAAA
                     EGDNQCEQKLKTSNGDTPTHEDLTKNKERTSENRGLSRLFSSFLKRPKSQVSEEEGKE
                     VESAKEKGEGHKEIEFGASLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQE
                     EHREDPDFQTEEGGGLEDCSKTEVKEESPESVAERELKASQKSIRRHRNMHCKVSLLD
                     DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSLAIWDNATSKTWLDSAKEIKKQVR
                     GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ
                     SELGDYDPELHGADYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK
                     LSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIK
                     IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFRLTSTDTIPKSKFLALGSKFR
                     YSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAIAQ
                     SQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEVPPEQPEPELTEVWKDLDKSQEEI
                     KKHHASISELKKNFMESVPEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGPPLVKTQT
                     VTISDTANAVKSEIPTKDVPIVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSET
                     TSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSVTK
                     VVVHQETEISEE"
     misc_feature    239..>631
                     /gene="EPB41"
                     /note="WTX protein; Region: WTX; pfam09422"
                     /db_xref="CDD:462794"
     misc_feature    638..1210
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1193..1474
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1220..1222,1271..1273,1277..1279,1295..1297)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1307..1309,1322..1333,1436..1438,1448..1450,
                     1457..1462)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1436..1471
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1502..1633
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    1850..1990
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2102..2425
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 caacgtcatg acaacagaga agagtttagt ggctgaggct gaaaatccac agcagcaaca
       61 acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc agctggaaga
      121 ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga aaacatccaa
      181 tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat cagaaaacag
      241 gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg tctctgagga
      301 ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag agatagaatt
      361 tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc ctgagcctga
      421 gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa cacagcctgc
      481 tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag gacttgaaga
      541 ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa gagaattaaa
      601 agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt ctttgttgga
      661 tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt tacttaaacg
      721 agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca tttgggataa
      781 tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg ttcgtggtgt
      841 cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac agttaacaga
      901 agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg caggacgtct
      961 gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt ctgagctggg
     1021 agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac tggccccaaa
     1081 tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca ggtccatgac
     1141 tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta tgtatggtgt
     1201 tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg tctgctctag
     1261 tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc ccaaagtgct
     1321 gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag agcaagaaca
     1381 gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga aattatggaa
     1441 ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca ttcctaaaag
     1501 caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg ctcagaccag
     1561 gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag caagcaaacg
     1621 ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa gtcctcggcc
     1681 cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc caggtgcacc
     1741 tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg aagtgaaaaa
     1801 ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga aggatttaga
     1861 caaaagtcaa gaagagatca aaaaacatca tgccagcatc agtgagctga aaaagaactt
     1921 catggaatct gtaccagaac cacagcctag tgaatgggat aaacgcttat ccactcactc
     1981 tccctttcga acacttaaca tcaatgggca aatccctaca ggagaaggac ctcccctggt
     2041 gaagactcag accgtcacca tctcagacac tgccaatgct gtgaaaagtg aaattccaac
     2101 caaagacgtc cctatagtcc acactgagac caagaccatc acttatgagg ctgcccagac
     2161 tgacgacagc aacggggact tggacccagg agtcttgctg acagctcaga ccatcacatc
     2221 tgagaccacc agcagcacca ccacaactca aattaccaag actgtaaaag gtgggatttc
     2281 agagacccgg attgaaaagc gaattgtgat cacaggagat gccgatattg accatgatca
     2341 ggtcctcgta caggccatca aggaggcaaa ggagcagcac ccagacatgt cagtgaccaa
     2401 ggtggtcgtc catcaggaga ccgagatctc tgaggagtga gctcaggaac tgtcctaccc
     2461 tcccccctcc cccggctccc tgcccatctc ccgtcccaga gaaaaccagc ggaatgataa
     2521 agaagctaac ctgcaatagt cagacttcag acttttaaaa tgattgattc taaaccacca
     2581 gaaaagcaat ttcattttct atttggagtt tataccaaga aagtcttcta gatatcactg
     2641 atccttttga atacattttt ctatattgtg ataccagaaa ttgttcaact tttcactctt
     2701 tggactgttt ttaaagagcc ttttgttttt ttatggggtg gtttgtaacc ccttcagccc
     2761 agcctccccc catttatact gacagggtcc ccagcattct tcgggaaatc ctccaatgac
     2821 tctgtcagct gtgttggggg acaaagccag cttaatgggg cttccctgct cctcctctag
     2881 tttataccct ttagatggca gcagaaactt cataaaccag ccctttctca gagccagtga
     2941 tgtaacttta tcagaatgtc aggcagggcg gctgccctga tccagagacc ccaggaagat
     3001 gtccctgtcc ctttgctgag ggtggtatgg ggaggcagag gcctctgcta agaatgtagt
     3061 attgttttcc ttcctctctc ctgttctttc tttttggagc ttctttagat caaagacata
     3121 agaagttgct tcagatatat ctgatactgt gaatgtttga acatatccgt ggccttcacc
     3181 ttcctgccct ccctcccctt ttacctcatc agaagcagtg gctctgctaa gtgctccccc
     3241 cacctcccat ctcaggagag accaaaactc acagaaaaat aggcactttg ggccaaaagc
     3301 actgaccgca catttttagt ggtgatttgg acaaagaaag ttggagagat ttttttaaag
     3361 gttttctagt tctgggaatg tgcacttcac acgagggagt ggtggagttt acctcagttg
     3421 gatcctgcta agaagtattt ccaggagaac atccctgagc ctctctcttt aatccagggg
     3481 tgagagatga tgtgactgag agaggaggcg atcgtggtcc aggccggccc ctgcctgcag
     3541 agacccttct ggagtgtggg aattggcttt taggggccac gctccccaca aaaccccact
     3601 tgacaagggg tacaaacacc agctccactc atccccactt gccatctgag gtctgtcagg
     3661 ttttgtggct tgatgtttgc ggtgggtttg ggtttaattt tttgtttttg tttttgaaaa
     3721 tgaggactga tgtccccaat cccactattc ctggtaaaga ttaggggaca tttttattca
     3781 gtagggcctc tctgatcttc cagcttgctt cccacaaaca gatctaccta caagttctta
     3841 gaatcctgat tctaggacag aaagtgagct tcctgaggtg gacagtgggt cccagtcagc
     3901 agtggctggg ggctccaggg cggtgagcag gagagaagtc tacagcctct gctcccagcc
     3961 cgcagcacgt ctccggagtc tctgctggct gacctttgtt tagacaaact cagttggttt
     4021 gaactgtttt cacgagtgtg cgtttttctc ttagtactta cttgagactg ttactaacca
     4081 acaggtagct ctctctgggc agggacagga agagctcagg tgggatatgt gacaggcttc
     4141 gggggggaag gagagtgccc tgtctcaggg acagacggcc tggggcatac ggtctggaac
     4201 gatggggctt ttccaggccg tgcccaagcc cgagctttgt tgcccagagc ggtggtgagg
     4261 ttggaaatcc agctcacatc atataggcat gcgatgtgag ctcacctgcc aatggccagc
     4321 tgtcctgctg gaagagctgc cggagcttgc agagctgcaa cctgtggaac gaagatgggg
     4381 aaaggaagag ggctcagcat gcacgtcagg aacctggcac actgagtatt ctgtgccatc
     4441 cagctcagtg tggccacttt cactgcctag gaccacaaat caggggcctg aacttcccct
     4501 caacctgtca ccaactcact tcagcctgct tccttgtcta taagtcggac cagaagatct
     4561 ccaatgccct tctggcgctg agaagccatg atatggacaa gccaacactt ggaaggggtg
     4621 tccttccaag cctctttcct tttcctccct ctctggttac agaacttggg gtttggcaat
     4681 tgtttggatc tttttttttc tttctgcaac tgtgtgtgtg cgtgtgtgtg aagaaaaaca
     4741 gactgtccag gtggaaatgg tgaagagggg agaagcgttc atttccagtg tcaacaactt
     4801 ggcagttttc ctaaagtgac tcagacacag cacaggaaca actctcactg caattttatt
     4861 tttatctcac ttcagaaaca aagatttctt ccaagccacg tgaggtctct gccacccacc
     4921 tacccaaccc acccacaaag caggacctga atttatccgc tgagggccca cagagcctgg
     4981 ctgcagggac ctgtcagggc ctctgcccac ccccagtccc ccaccgtgtg ttgcggggca
     5041 gctgagggtg agggagcaac agtccacctc gggaaatgga gccagggcta tggcctgacc
     5101 aataccaagg aaggctcgtg ggaaatacct gtccaggatc ttagccccag gctggttggt
     5161 tttacagatc tctctcaaat gttttatttt ggtgacaaaa atgaaggagc tttgtaaatt
     5221 taaaaaaaaa attatgaatc atatcaagta gttgtttaca tttcttgaca aaataggaac
     5281 tatgccagcc gaatcaaatt ggcaaaatcc ttagattaaa taggcaataa ttaggtctgc
     5341 cgttttggcc ttttgtagtt agagaagtgg tggtagtgtt tagatactgt ttggtcttgc
     5401 ttcttgtatt gcatttttca ataa
//
LOCUS       XM_032647585            5617 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythrocyte membrane protein band 4.1
            (EPB41), transcript variant X13, mRNA.
ACCESSION   XM_032647585
VERSION     XM_032647585.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5617
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5617
                     /gene="EPB41"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 18 long SRA reads, 44
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761583"
     CDS             765..2633
                     /gene="EPB41"
                     /codon_start=1
                     /product="protein 4.1 isoform X13"
                     /protein_id="XP_032503476.1"
                     /db_xref="GeneID:116761583"
                     /translation="MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFSL
                     AIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQ
                     DIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGADYVSDFKLAPNQTKELEEKVME
                     LHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKL
                     RINRFPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHT
                     FFRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSL
                     DGAAAVDSADRSPRPTSAPAIAQSQAAEGSVPGAPVKKAVVSKTPKETVQVEVKKEEV
                     PPEQPEPELTEVWKKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNF
                     MESVPEPQPSEWDKRLSTHSPFRTLNINGQIPTGEGPPLVKTQTVTISDTANAVKSEI
                     PTKDVPIVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTTQITKTVK
                     GGISETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSVTKVVVHQETEISEE"
     misc_feature    768..1340
                     /gene="EPB41"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    1323..1604
                     /gene="EPB41"
                     /note="FERM domain C-lobe of Protein 4.1 family; Region:
                     FERM_C_4_1_family; cd13184"
                     /db_xref="CDD:270005"
     misc_feature    order(1350..1352,1401..1403,1407..1409,1425..1427)
                     /gene="EPB41"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    order(1437..1439,1452..1463,1566..1568,1578..1580,
                     1587..1592)
                     /gene="EPB41"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1566..1601
                     /gene="EPB41"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270005"
     misc_feature    1632..1763
                     /gene="EPB41"
                     /note="FERM adjacent (FA); Region: FA; pfam08736"
                     /db_xref="CDD:462582"
     misc_feature    2037..2183
                     /gene="EPB41"
                     /note="SAB domain; Region: SAB; pfam04382"
                     /db_xref="CDD:461285"
     misc_feature    2295..2618
                     /gene="EPB41"
                     /note="4.1 protein C-terminal domain (CTD); Region:
                     4_1_CTD; pfam05902"
                     /db_xref="CDD:461774"
ORIGIN      
        1 ggggcctcaa gccggagttg ccctgtcagt gcaggtggag gcccccggcg gggcaaagtg
       61 gcaggaacct cttaaagggc gagagtggcg gagggcgaga acgcggcccg gcccggccca
      121 gccaggtctc cgccccatcc ggcccagaga agagtttagt ggctgaggct gaaaatccac
      181 agcagcaaca acagaaggaa gagggtgagg gagccacaaa ctcgggtcaa caggaaactc
      241 agctggaaga ggctcctcaa gcagcagccg agggagataa tcagtgtgag cagaagctga
      301 aaacatccaa tggagacact ccaacacatg aagatttgac caagaacaag gagcggacat
      361 cagaaaacag gggcctgtca cggctgttct cctcatttct caaaaggcct aaatctcagg
      421 tctctgagga ggaaggcaaa gaagtagagt cagcgaaaga gaaaggtgaa ggtcataaag
      481 agatagaatt tggagccagt cttgacgaag agatcatttt aaaggccccg attgcagctc
      541 ctgagcctga gctcaaaaca gacccatcct tggatcttca ttcattaagc agtgcagaaa
      601 cacagcctgc tcaggaagaa cacagagaag atcccgattt tcagactgag gaaggaggag
      661 gacttgaaga ctgctctaaa acagaagtaa aagaagaaag tcctgaatca gtagcagaaa
      721 gagaattaaa agcttcccag aaatcgatca gaagacacag aaacatgcat tgcaaggttt
      781 ctttgttgga tgacacagtt tatgaatgtg ttgtggagaa acatgctaag ggacaagatt
      841 tacttaaacg agtatgtgaa cacctcaatc ttttggaaga agactacttt agtctagcca
      901 tttgggataa tgcaacctct aagacatggc tggattctgc caaagaaata aaaaagcagg
      961 ttcgtggtgt cccttggaat ttcacattta atgtaaagtt ttatccacct gacccagcac
     1021 agttaacaga agatataaca aggtattatt tatgtcttca acttcggcag gacatagttg
     1081 caggacgtct gccctgttca tttgcaacct tagcattatt aggttcttat accatccagt
     1141 ctgagctggg agactatgac ccagaactcc atggtgcaga ttatgttagt gattttaaac
     1201 tggccccaaa tcagaccaag gaacttgaag agaaggtcat ggaactgcat aagtcataca
     1261 ggtccatgac tccagctcag gctgacctgg aatttcttga gaatgccaaa aagttgtcta
     1321 tgtatggtgt tgaccttcat aaagcaaagg acttggaggg agtggatatc atcctaggtg
     1381 tctgctctag tggccttctg gtttacaaag ataagctgag aattaaccgc tttccttggc
     1441 ccaaagtgct gaagatttct tacaaacgta gcagcttttt cattaagatt cggcctggag
     1501 agcaagaaca gtatgaaagt accatcggat tcaaacttcc cagttaccga gcagctaaga
     1561 aattatggaa ggtctgtgta gagcatcaca cgtttttcag actgacatct acagacacca
     1621 ttcctaaaag caaatttctt gccctgggat ccaaatttcg atacagtggc cgaactcagg
     1681 ctcagaccag gcaagctagt gctctgattg acaggcctgc cccacacttt gagcgtacag
     1741 caagcaaacg ggcatcccga agccttgatg gagcagcagc cgttgattca gcagaccgaa
     1801 gtcctcggcc cacctctgca ccggccattg ctcagagtca ggccgcagaa ggcagcgtcc
     1861 caggtgcacc tgttaaaaaa gcagtggttt ctaaaacacc aaaggaaaca gtgcaggttg
     1921 aagtgaaaaa ggaagaagtc ccacctgagc aacctgagcc agagctcaca gaagtgtgga
     1981 agaaaaagag agagagacta gatggtgaaa acatttatat cagacatagc aatttaatgt
     2041 tggaggattt agacaaaagt caagaagaga tcaaaaaaca tcatgccagc atcagtgagc
     2101 tgaaaaagaa cttcatggaa tctgtaccag aaccacagcc tagtgaatgg gataaacgct
     2161 tatccactca ctctcccttt cgaacactta acatcaatgg gcaaatccct acaggagaag
     2221 gacctcccct ggtgaagact cagaccgtca ccatctcaga cactgccaat gctgtgaaaa
     2281 gtgaaattcc aaccaaagac gtccctatag tccacactga gaccaagacc atcacttatg
     2341 aggctgccca gactgacgac agcaacgggg acttggaccc aggagtcttg ctgacagctc
     2401 agaccatcac atctgagacc accagcagca ccaccacaac tcaaattacc aagactgtaa
     2461 aaggtgggat ttcagagacc cggattgaaa agcgaattgt gatcacagga gatgccgata
     2521 ttgaccatga tcaggtcctc gtacaggcca tcaaggaggc aaaggagcag cacccagaca
     2581 tgtcagtgac caaggtggtc gtccatcagg agaccgagat ctctgaggag tgagctcagg
     2641 aactgtccta ccctcccccc tcccccggct ccctgcccat ctcccgtccc agagaaaacc
     2701 agcggaatga taaagaagct aacctgcaat agtcagactt cagactttta aaatgattga
     2761 ttctaaacca ccagaaaagc aatttcattt tctatttgga gtttatacca agaaagtctt
     2821 ctagatatca ctgatccttt tgaatacatt tttctatatt gtgataccag aaattgttca
     2881 acttttcact ctttggactg tttttaaaga gccttttgtt tttttatggg gtggtttgta
     2941 accccttcag cccagcctcc ccccatttat actgacaggg tccccagcat tcttcgggaa
     3001 atcctccaat gactctgtca gctgtgttgg gggacaaagc cagcttaatg gggcttccct
     3061 gctcctcctc tagtttatac cctttagatg gcagcagaaa cttcataaac cagccctttc
     3121 tcagagccag tgatgtaact ttatcagaat gtcaggcagg gcggctgccc tgatccagag
     3181 accccaggaa gatgtccctg tccctttgct gagggtggta tggggaggca gaggcctctg
     3241 ctaagaatgt agtattgttt tccttcctct ctcctgttct ttctttttgg agcttcttta
     3301 gatcaaagac ataagaagtt gcttcagata tatctgatac tgtgaatgtt tgaacatatc
     3361 cgtggccttc accttcctgc cctccctccc cttttacctc atcagaagca gtggctctgc
     3421 taagtgctcc ccccacctcc catctcagga gagaccaaaa ctcacagaaa aataggcact
     3481 ttgggccaaa agcactgacc gcacattttt agtggtgatt tggacaaaga aagttggaga
     3541 gattttttta aaggttttct agttctggga atgtgcactt cacacgaggg agtggtggag
     3601 tttacctcag ttggatcctg ctaagaagta tttccaggag aacatccctg agcctctctc
     3661 tttaatccag gggtgagaga tgatgtgact gagagaggag gcgatcgtgg tccaggccgg
     3721 cccctgcctg cagagaccct tctggagtgt gggaattggc ttttaggggc cacgctcccc
     3781 acaaaacccc acttgacaag gggtacaaac accagctcca ctcatcccca cttgccatct
     3841 gaggtctgtc aggttttgtg gcttgatgtt tgcggtgggt ttgggtttaa ttttttgttt
     3901 ttgtttttga aaatgaggac tgatgtcccc aatcccacta ttcctggtaa agattagggg
     3961 acatttttat tcagtagggc ctctctgatc ttccagcttg cttcccacaa acagatctac
     4021 ctacaagttc ttagaatcct gattctagga cagaaagtga gcttcctgag gtggacagtg
     4081 ggtcccagtc agcagtggct gggggctcca gggcggtgag caggagagaa gtctacagcc
     4141 tctgctccca gcccgcagca cgtctccgga gtctctgctg gctgaccttt gtttagacaa
     4201 actcagttgg tttgaactgt tttcacgagt gtgcgttttt ctcttagtac ttacttgaga
     4261 ctgttactaa ccaacaggta gctctctctg ggcagggaca ggaagagctc aggtgggata
     4321 tgtgacaggc ttcggggggg aaggagagtg ccctgtctca gggacagacg gcctggggca
     4381 tacggtctgg aacgatgggg cttttccagg ccgtgcccaa gcccgagctt tgttgcccag
     4441 agcggtggtg aggttggaaa tccagctcac atcatatagg catgcgatgt gagctcacct
     4501 gccaatggcc agctgtcctg ctggaagagc tgccggagct tgcagagctg caacctgtgg
     4561 aacgaagatg gggaaaggaa gagggctcag catgcacgtc aggaacctgg cacactgagt
     4621 attctgtgcc atccagctca gtgtggccac tttcactgcc taggaccaca aatcaggggc
     4681 ctgaacttcc cctcaacctg tcaccaactc acttcagcct gcttccttgt ctataagtcg
     4741 gaccagaaga tctccaatgc ccttctggcg ctgagaagcc atgatatgga caagccaaca
     4801 cttggaaggg gtgtccttcc aagcctcttt ccttttcctc cctctctggt tacagaactt
     4861 ggggtttggc aattgtttgg atcttttttt ttctttctgc aactgtgtgt gtgcgtgtgt
     4921 gtgaagaaaa acagactgtc caggtggaaa tggtgaagag gggagaagcg ttcatttcca
     4981 gtgtcaacaa cttggcagtt ttcctaaagt gactcagaca cagcacagga acaactctca
     5041 ctgcaatttt atttttatct cacttcagaa acaaagattt cttccaagcc acgtgaggtc
     5101 tctgccaccc acctacccaa cccacccaca aagcaggacc tgaatttatc cgctgagggc
     5161 ccacagagcc tggctgcagg gacctgtcag ggcctctgcc cacccccagt cccccaccgt
     5221 gtgttgcggg gcagctgagg gtgagggagc aacagtccac ctcgggaaat ggagccaggg
     5281 ctatggcctg accaatacca aggaaggctc gtgggaaata cctgtccagg atcttagccc
     5341 caggctggtt ggttttacag atctctctca aatgttttat tttggtgaca aaaatgaagg
     5401 agctttgtaa atttaaaaaa aaaattatga atcatatcaa gtagttgttt acatttcttg
     5461 acaaaatagg aactatgcca gccgaatcaa attggcaaaa tccttagatt aaataggcaa
     5521 taattaggtc tgccgttttg gccttttgta gttagagaag tggtggtagt gtttagatac
     5581 tgtttggtct tgcttcttgt attgcatttt tcaataa
//
LOCUS       XM_032647597            1945 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 200B (TMEM200B),
            transcript variant X1, mRNA.
ACCESSION   XM_032647597
VERSION     XM_032647597.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1945
                     /gene="TMEM200B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761623"
     CDS             97..1020
                     /gene="TMEM200B"
                     /codon_start=1
                     /product="transmembrane protein 200B"
                     /protein_id="XP_032503488.1"
                     /db_xref="GeneID:116761623"
                     /translation="MTAGSPGDCGEVRRSPEGRVSRLGRRLGRRRRPRSPPEPLRVRA
                     RLRLRSPSGAFAALGALVVLVGMGIAVAGYWPHRAGVPGPRAANASAPPLSELRREGR
                     GAGRAHGPHERLRLLGPVVMGVGLFVFICANTLLYENRDLETRRLRQGVLRAQALRPP
                     DGPGWDCVLLPSPGPRTPRATGCVEPESWDLSPCRGTSPVPSVRSLRSEPANPRLGLP
                     ALLNSYPLKGPGLHPPWGPRTQTGHVIITVQPSGSCIEHSKSLDLGLGELLLRAPAAQ
                     DCAHRSWPRLDRLSLGGYAKLGGGGDLGARV"
     misc_feature    <244..537
                     /gene="TMEM200B"
                     /note="Uncharacterized conserved protein (DUF2371);
                     Region: DUF2371; pfam10177"
                     /db_xref="CDD:462979"
ORIGIN      
        1 ctaggagacc gcggcagtgc cgcgagccgc ggcgcgcgga ctcggacccg gacccagccg
       61 ggtgcggagg cggcagagcg ccaagacgac tgagagatga cggctgggag ccccggagac
      121 tgcggggagg tgcggaggag ccccgagggc cgcgtctccc gcctgggccg ccgcctgggc
      181 cgccgccggc gcccgcgctc cccgcccgag cccctgcggg tgcgggcgcg gctgcggctg
      241 cgatcgccgt cgggggcgtt cgcggcgctg ggggcgctcg tggtcctggt gggcatgggc
      301 atcgcagtgg ccggctactg gccgcaccgc gccggggtcc cgggaccccg ggctgcaaac
      361 gccagcgcgc cccccctgag cgagctgcgg cgcgagggtc ggggcgccgg ccgggcccac
      421 ggcccgcacg agcggctgcg actccttggg cccgtggtca tgggcgtcgg cctgttcgtg
      481 ttcatctgcg ccaacacgct gctctacgag aaccgagact tggagactcg acggcttcgt
      541 cagggggtgc tgcgggctca ggcgctccga cccccggacg gcccaggctg ggactgcgtt
      601 ctcctcccca gccccggccc caggactccc cgagccacag gctgcgtgga gccagaaagc
      661 tgggacctgt ccccgtgtcg gggtacctca ccagtcccat cagtgcggag tctgcgttca
      721 gagcctgcta atcctcgctt ggggttacct gccctgctca acagttaccc gctgaagggc
      781 ccagggctgc acccaccctg gggtccacgg acccagactg gccatgtgat tatcaccgtg
      841 cagccctctg gttcctgcat tgaacattcc aagtctctgg atctgggcct tggggagctc
      901 ctgcttaggg ccccagcagc tcaggactgt gctcaccgaa gctggccacg gctggaccgc
      961 cttagtctgg ggggttacgc caagttggga ggaggagggg acttgggggc ccgggtctga
     1021 ggagcagggg acagcctgct atgaggctgc agcatggacc atggtaccgg actaggatgg
     1081 gagtcccaat gtctagtaga tgcttcagtc acatcccaga ctgggaatgg atgctctggc
     1141 cccagcagct gctaaggcat cctgacttgc atgtcagcag agaaatgcca actgcacaag
     1201 ggttcaaaaa gccggagaga atgtgtttta acgtggaatc tggagaccag catgactcag
     1261 ccttaggaat tccttcagcc tccaaaagtg gccttagccc tggacaggta cctgaggggg
     1321 ctggaggtcc aggccagggt gattgggaga tgtatctggt gtcttggcaa acccaaagtg
     1381 gtgggcaagg accctaagac ttggaaggta ggttgtgatg ttacaggctg ggacaggctc
     1441 cctccaaggt ggcactagtg atagggtttg cgcctctggg aagacgggca atggggtgga
     1501 gctgagatgt tccaccgcca tctgggatgg agactgagcc tttaattcct accaggtcaa
     1561 tccctcccct cctcagccat gcagggtata tcccacgagg gctacactac tgccaatgcc
     1621 ttcatactga gggtctggcc cctcccttaa agaggtctga gaagcccccc ttctctcctt
     1681 tgtcgtggcc tgtgccacga aatttccctc cagttggcaa aaagcatatg ccagttccca
     1741 gaaatccttt tatatgttga aactgcattt tggtcaatgt ggacaccttt agaaaatggc
     1801 ttggatttgg gtcttcctgt cgcacgttta atttttcccg agttgccggt aagagaagag
     1861 aactttaaac gttgatcaat cttcacagag tccttttttt tttttcaagt ttattgaaaa
     1921 atgcaataca agaagcaaga ccaaa
//
LOCUS       XM_032647608            1922 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 200B (TMEM200B),
            transcript variant X2, mRNA.
ACCESSION   XM_032647608
VERSION     XM_032647608.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1922
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1922
                     /gene="TMEM200B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116761623"
     CDS             74..997
                     /gene="TMEM200B"
                     /codon_start=1
                     /product="transmembrane protein 200B"
                     /protein_id="XP_032503499.1"
                     /db_xref="GeneID:116761623"
                     /translation="MTAGSPGDCGEVRRSPEGRVSRLGRRLGRRRRPRSPPEPLRVRA
                     RLRLRSPSGAFAALGALVVLVGMGIAVAGYWPHRAGVPGPRAANASAPPLSELRREGR
                     GAGRAHGPHERLRLLGPVVMGVGLFVFICANTLLYENRDLETRRLRQGVLRAQALRPP
                     DGPGWDCVLLPSPGPRTPRATGCVEPESWDLSPCRGTSPVPSVRSLRSEPANPRLGLP
                     ALLNSYPLKGPGLHPPWGPRTQTGHVIITVQPSGSCIEHSKSLDLGLGELLLRAPAAQ
                     DCAHRSWPRLDRLSLGGYAKLGGGGDLGARV"
     misc_feature    <221..514
                     /gene="TMEM200B"
                     /note="Uncharacterized conserved protein (DUF2371);
                     Region: DUF2371; pfam10177"
                     /db_xref="CDD:462979"
ORIGIN      
        1 cgcgacaccc gctccttcct tccctgcggt acttgaagcg cagcagagag gagagcgcca
       61 agacgactga gagatgacgg ctgggagccc cggagactgc ggggaggtgc ggaggagccc
      121 cgagggccgc gtctcccgcc tgggccgccg cctgggccgc cgccggcgcc cgcgctcccc
      181 gcccgagccc ctgcgggtgc gggcgcggct gcggctgcga tcgccgtcgg gggcgttcgc
      241 ggcgctgggg gcgctcgtgg tcctggtggg catgggcatc gcagtggccg gctactggcc
      301 gcaccgcgcc ggggtcccgg gaccccgggc tgcaaacgcc agcgcgcccc ccctgagcga
      361 gctgcggcgc gagggtcggg gcgccggccg ggcccacggc ccgcacgagc ggctgcgact
      421 ccttgggccc gtggtcatgg gcgtcggcct gttcgtgttc atctgcgcca acacgctgct
      481 ctacgagaac cgagacttgg agactcgacg gcttcgtcag ggggtgctgc gggctcaggc
      541 gctccgaccc ccggacggcc caggctggga ctgcgttctc ctccccagcc ccggccccag
      601 gactccccga gccacaggct gcgtggagcc agaaagctgg gacctgtccc cgtgtcgggg
      661 tacctcacca gtcccatcag tgcggagtct gcgttcagag cctgctaatc ctcgcttggg
      721 gttacctgcc ctgctcaaca gttacccgct gaagggccca gggctgcacc caccctgggg
      781 tccacggacc cagactggcc atgtgattat caccgtgcag ccctctggtt cctgcattga
      841 acattccaag tctctggatc tgggccttgg ggagctcctg cttagggccc cagcagctca
      901 ggactgtgct caccgaagct ggccacggct ggaccgcctt agtctggggg gttacgccaa
      961 gttgggagga ggaggggact tgggggcccg ggtctgagga gcaggggaca gcctgctatg
     1021 aggctgcagc atggaccatg gtaccggact aggatgggag tcccaatgtc tagtagatgc
     1081 ttcagtcaca tcccagactg ggaatggatg ctctggcccc agcagctgct aaggcatcct
     1141 gacttgcatg tcagcagaga aatgccaact gcacaagggt tcaaaaagcc ggagagaatg
     1201 tgttttaacg tggaatctgg agaccagcat gactcagcct taggaattcc ttcagcctcc
     1261 aaaagtggcc ttagccctgg acaggtacct gagggggctg gaggtccagg ccagggtgat
     1321 tgggagatgt atctggtgtc ttggcaaacc caaagtggtg ggcaaggacc ctaagacttg
     1381 gaaggtaggt tgtgatgtta caggctggga caggctccct ccaaggtggc actagtgata
     1441 gggtttgcgc ctctgggaag acgggcaatg gggtggagct gagatgttcc accgccatct
     1501 gggatggaga ctgagccttt aattcctacc aggtcaatcc ctcccctcct cagccatgca
     1561 gggtatatcc cacgagggct acactactgc caatgccttc atactgaggg tctggcccct
     1621 cccttaaaga ggtctgagaa gccccccttc tctcctttgt cgtggcctgt gccacgaaat
     1681 ttccctccag ttggcaaaaa gcatatgcca gttcccagaa atccttttat atgttgaaac
     1741 tgcattttgg tcaatgtgga cacctttaga aaatggcttg gatttgggtc ttcctgtcgc
     1801 acgtttaatt tttcccgagt tgccggtaag agaagagaac tttaaacgtt gatcaatctt
     1861 cacagagtcc tttttttttt ttcaagttta ttgaaaaatg caatacaaga agcaagacca
     1921 aa
//
LOCUS       XM_032647622            4568 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adhesion G protein-coupled receptor L4
            (ADGRL4), transcript variant X1, mRNA.
ACCESSION   XM_032647622
VERSION     XM_032647622.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4568
                     /gene="ADGRL4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761632"
     CDS             324..2543
                     /gene="ADGRL4"
                     /codon_start=1
                     /product="adhesion G protein-coupled receptor L4 isoform
                     X1"
                     /protein_id="XP_032503513.1"
                     /db_xref="GeneID:116761632"
                     /translation="MRLLPLLVGFSTLLNCCYTQNCTRTPCLPNAKCEIRNGAEGCYC
                     NIGFSGNGVTICEDDNECGNLTQSCGENANCTNTEGSYYCMCAPGFRSSSKQDKFITN
                     DGTICIDIDECNESFACGDHAMCENVDGGYYCSCKEGYTSTGNSQFTPNDGTYCQEIV
                     NPDCHLDNICIAANINKTLTKIRHIEEPVALLQEVYRNSVKDLSPTDIITYIEILAES
                     SPLLGYMNSTNSAKDTLSNSTLTEFVKTVNNFVQKDTFIVWDKLSTNHRRTHLTKLIH
                     AVEQATLRLSQNFQKTTQFDTNSSDIALKVFFFDSYHMKHIHPHMNMDGDNIKIFPNR
                     KAAYDSNGSVAVAFLYYKSIGPLFSSSDNILLEPQSYDKAEEEGRVISSVISVSISSN
                     PPTLYEFEKITFTLNHIKTTDKYRSQCAFWNYLPDTMNGSWSSEGCEVTYSNVTHTSC
                     SCNHLTHFAILMSSGSSIGIKDYNILTRITQLGIIISLICLAICIFTFWFFSEIQSTR
                     TTIHKNLCCSLFLAELVFLVGINTNTNKLFCSIIAGLLHYFFLAAFAWMCIEGIHLYL
                     IVVGVIYNKGFLHKNFYIFGYLSPAVVVGFSASLGYRYYGTTKVCWLSTENNFIWSFI
                     GPACLIILVNLLAFGVIIYKVFRHTAGLKPEVSCCENIRSCARGALALLFLLGTTWIF
                     GVLHVVHASVVTAYIFTVSNAFQGMFIFLFLCVLSRKIQEEYYRLFKNVPCCFGCLR"
     misc_feature    495..590
                     /gene="ADGRL4"
                     /note="Calcium-binding EGF domain; Region: EGF_CA;
                     pfam07645"
                     /db_xref="CDD:429571"
     misc_feature    order(495..497,504..506,552..554)
                     /gene="ADGRL4"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    648..758
                     /gene="ADGRL4"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(648..650,657..659,702..704)
                     /gene="ADGRL4"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    882..1454
                     /gene="ADGRL4"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     Region: GAIN; pfam16489"
                     /db_xref="CDD:465137"
     misc_feature    1575..1706
                     /gene="ADGRL4"
                     /note="GPCR proteolysis site, GPS, motif; Region: GPS;
                     pfam01825"
                     /db_xref="CDD:460350"
     misc_feature    1740..2513
                     /gene="ADGRL4"
                     /note="Epidermal Growth Factor, latrophilin and seven
                     transmembrane domain-containing protein 1; member of the
                     class B2 family of seven-transmembrane G protein-coupled
                     receptors; Region: 7tmB2_ETL; cd15437"
                     /db_xref="CDD:320553"
     misc_feature    1746..1823
                     /gene="ADGRL4"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320553"
     misc_feature    order(1761..1763,1773..1775,1899..1901,1908..1913,
                     1920..1922,1941..1943,1962..1964,2178..2183,2187..2189,
                     2193..2195,2361..2363,2370..2372,2406..2408,2418..2420)
                     /gene="ADGRL4"
                     /note="putative polypeptide ligand binding pocket
                     [polypeptide binding]; other site"
                     /db_xref="CDD:320553"
     misc_feature    1848..1916
                     /gene="ADGRL4"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320553"
     misc_feature    1941..2024
                     /gene="ADGRL4"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320553"
     misc_feature    2058..2120
                     /gene="ADGRL4"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320553"
     misc_feature    2169..2258
                     /gene="ADGRL4"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320553"
     misc_feature    2304..2387
                     /gene="ADGRL4"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320553"
     misc_feature    2397..2474
                     /gene="ADGRL4"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320553"
ORIGIN      
        1 gtctttgagg gcaacaccct gaacgctgcc cgcgggaagg ggacagaatc cccccgaggg
       61 gtgcgcggag cgcagcgggc cggcagcccc gaggccaggg gtgaggtcag ggtggcctgg
      121 gggccgggcc cggacgtggc ctgcagactc agcgctggac gagcgcactc acacaaaaga
      181 ggccggaaag tggcgggagg aagcgggcgc gtcacggggg ccgcagccgg gagcctggcg
      241 cgcccgcccc gccgcgtccc aggtacacag cccgctcgcc ccgccgctcc gccaccgcca
      301 ccgccacgac cgcggcgccg ccaatgagac tccttccgct cctagtgggt ttttccactt
      361 tgctgaattg ttgctacact cagaattgta ccaggacacc ttgtctccca aatgcaaaat
      421 gtgaaatacg gaatggagct gaaggctgct attgcaacat tggattttca ggaaatggtg
      481 tcacaatttg tgaagatgat aatgagtgtg gaaatttaac gcagtcctgt ggtgaaaatg
      541 ctaactgcac gaacacagaa ggaagttact actgtatgtg tgcacctggt ttcagatcca
      601 gcagtaagca agacaagttt attactaatg atggaaccat ctgcatagat atagatgaat
      661 gcaatgaatc atttgcctgt ggagatcatg caatgtgtga aaatgtggat ggtggatatt
      721 actgctcctg caaggaaggt tatacatcca caggaaactc acagttcaca cctaatgatg
      781 gcacttattg ccaagaaatt gtgaatccag actgccattt agataatatc tgtattgcgg
      841 cgaatattaa taaaacttta acaaaaatta ggcacataga agaacctgta gctttgctac
      901 aagaagtcta tagaaattct gtgaaagatc tttcaccgac ggatataatt acatatatag
      961 aaatattagc tgaatcatcc ccattactgg gttatatgaa tagcacgaat tcggccaagg
     1021 acaccctttc taattcaact cttactgaat ttgtaaaaac tgtgaataat tttgttcaaa
     1081 aggatacatt tatagtttgg gacaagttat ctacaaacca tagaagaact catcttacaa
     1141 aactgataca tgctgtggag caagctacct taaggctatc tcagaacttt caaaagacca
     1201 ctcagtttga tactaattca agtgatatag ctctcaaagt tttctttttt gattcatatc
     1261 acatgaagca tattcatccc catatgaata tggacggaga taatataaag atatttccaa
     1321 atagaaaagc tgcatatgat tcaaatggca gtgttgcagt tgcattttta tattataaga
     1381 gtattggtcc tctattttca tcgtctgaca acatcttatt ggaacctcaa agttatgata
     1441 aagctgaaga ggagggaaga gtcatctctt cagtaatttc agtctcaatt agctcaaacc
     1501 cacccacatt gtatgaattc gaaaaaataa catttacatt aaatcacata aagaccacag
     1561 ataagtatag gagtcaatgt gcattttgga actacttacc tgacaccatg aatggcagct
     1621 ggtcttcgga gggctgtgag gtgacatact caaatgtgac ccacacctca tgcagctgta
     1681 accacctgac acattttgca attttgatgt cttctggttc ttctattggt attaaagatt
     1741 ataatattct tacaaggatc actcaactag gaataattat ttcactgatt tgccttgcca
     1801 tatgcatttt taccttctgg ttcttcagtg aaattcaaag caccaggaca acaattcaca
     1861 aaaatctctg ctgtagccta ttccttgctg aacttgtttt tcttgttggg atcaatacaa
     1921 atactaataa gctcttctgt tccatcattg ccgggctgct gcattacttc tttttagctg
     1981 cctttgcatg gatgtgcatt gaaggcatcc acctctatct cattgttgta ggagtcatct
     2041 acaacaaggg atttttgcac aagaattttt atatctttgg ctatctcagc ccagctgtgg
     2101 tagttggatt ttcagcatca ttaggatata ggtattatgg caccaccaaa gtatgttggc
     2161 ttagcacaga aaacaacttt atttggagtt ttataggacc agcatgtcta atcatccttg
     2221 ttaatctctt ggcatttgga gttatcatat acaaagtttt tcgtcacact gcggggttga
     2281 aaccagaagt tagttgctgt gagaacataa ggtcttgtgc cagaggagcc cttgctctcc
     2341 tgttcctcct tggcaccacc tggatctttg gagtgctcca tgttgtgcat gcatcggtgg
     2401 tgacagctta catcttcacc gtcagcaatg ccttccaggg gatgttcatc ttcttattcc
     2461 tgtgtgtttt atctagaaag atccaagaag aatattatag attgttcaaa aatgtccctt
     2521 gttgtttcgg atgtttgagg taaacagaga gaactatgga tcattattgc tacacagaaa
     2581 taaagaagcc aagctgtgga tggccaatgt ataaaaatga ctcaaacaaa ttgtccaatt
     2641 gttaatacta atcaaatatt ttaagtccat ttttctgtgg aagaaatgta gataatacga
     2701 gataaaatta tgtaccatat agctatagta agctttccta catgacttag ttagctatgt
     2761 caaaaatagt attgcagata tttggaaagt aactggtttc tcagagtgat atcactgcac
     2821 ccaaggaaag attttctttc taacacaaaa aatatatgaa tgtcctgaag gaaaccactg
     2881 gcttgatatt ttcttgattc atgttgcctt tgaaactagt cccctatcac cttggtaatg
     2941 agctccgtta cagaaagtgg aacataagag aatgaagagg tagaatataa aacagtaaaa
     3001 agggaacgat ggttgtaaca atgagacata ttttgaacaa gctcgttgtt ttgtaaacta
     3061 gatgggaaat tagagataaa acaaacaatt gaataaacac atcttaccat tctgtgaatt
     3121 gttctgaact taaatttcta ccaaaacaac ttagacctgt atttgttata tctattttct
     3181 attctaatag tctataaaaa cacaaaactt cacaaaaaaa aaaaacctaa acatttctgt
     3241 tctgttttta ggttaacatc agaatgaggt atatgctctt tctatactta tttcacagat
     3301 tgtgatttca aatgcttatt cagtagtaca taaatgtgtc aaaatataat attgttcatg
     3361 cctgtaaatg taaaaattgt gtatataaac ctgaagtact ctgttccata acctttcagt
     3421 gtagtgaaaa atattgtatc tcattagact agcatatttg agtttatttt ttttaaattt
     3481 tagaaatatt gtagttcaca tcacaatatt ctcttttaac ttactatttt taaaagggca
     3541 ttgtaaatat gaaagtattc ataaagtgaa ttgctatttt tttctgttca gaaaagtaca
     3601 catttaaaaa tgttatttat aacaaagaaa tcactgggaa ctgtataaac tttcacactg
     3661 gatctatttt ctgacagttt tcttctatta aggcatatct gctaaaatgt aaagcttctg
     3721 tctatcttca agttttctca ttaaaatgta gacgcagtga ttttacttca aaaaatatgt
     3781 aattgttcta cacatacctt aaaagtgtgc caatacacta aatgtgattt taacttaatt
     3841 tctccagctg ttaaagtgaa gtctgtcaca tcttacacta acaaataaga tgatatctga
     3901 atgaatcttt ttacagcttg gctgaggcat ttctctagaa agatgagctg cctgccaatg
     3961 tcttaaacat ttttagagta tttgtgataa ctttttattt gatcttttga tctcttatat
     4021 gacctattat tatcattatc attataggac agtgctattg gaataagata ctaaaaaagt
     4081 aatctgttca atcaatgtat acaaattatg tgtggtgggc agaataatgg tcttcccaaa
     4141 atgcccacac cctaatcttg agaacacatg aatatgttag gttacgtgga gaggagaatt
     4201 aaccagctaa cagctagtcc tctaacttta acgtgaggaa attatcctgg atttttcagg
     4261 ttggtcccat gtaatcacaa gtttccttat aaacaaaaga tggaggcaga agagggagcc
     4321 tgttaaagca gtgccatacg aggcatactc aaccacacat tgctagcttt gaagatggaa
     4381 acagtccaca agccaaagaa catgggcagc tcctgtaatc tgagaaaggc aaggaaatgg
     4441 attctccccc agagctccta gaaggaagtc agccctgctg tacttttgtt ttagcccagg
     4501 gagacccagt ttggacttct aacatctaaa actgtaaaac aataaatgta tattgcttta
     4561 accaccaa
//
LOCUS       XM_032647629            4409 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adhesion G protein-coupled receptor L4
            (ADGRL4), transcript variant X2, mRNA.
ACCESSION   XM_032647629
VERSION     XM_032647629.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4409
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4409
                     /gene="ADGRL4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761632"
     CDS             318..2384
                     /gene="ADGRL4"
                     /codon_start=1
                     /product="adhesion G protein-coupled receptor L4 isoform
                     X2"
                     /protein_id="XP_032503520.1"
                     /db_xref="GeneID:116761632"
                     /translation="MRLLPLLVGFSTLLNCCYTQNCTRTPCLPNAKCEIRNGAEGCYC
                     NIGFSGNGVTICEDIDECNESFACGDHAMCENVDGGYYCSCKEGYTSTGNSQFTPNDG
                     TYCQEIVNPDCHLDNICIAANINKTLTKIRHIEEPVALLQEVYRNSVKDLSPTDIITY
                     IEILAESSPLLGYMNSTNSAKDTLSNSTLTEFVKTVNNFVQKDTFIVWDKLSTNHRRT
                     HLTKLIHAVEQATLRLSQNFQKTTQFDTNSSDIALKVFFFDSYHMKHIHPHMNMDGDN
                     IKIFPNRKAAYDSNGSVAVAFLYYKSIGPLFSSSDNILLEPQSYDKAEEEGRVISSVI
                     SVSISSNPPTLYEFEKITFTLNHIKTTDKYRSQCAFWNYLPDTMNGSWSSEGCEVTYS
                     NVTHTSCSCNHLTHFAILMSSGSSIGIKDYNILTRITQLGIIISLICLAICIFTFWFF
                     SEIQSTRTTIHKNLCCSLFLAELVFLVGINTNTNKLFCSIIAGLLHYFFLAAFAWMCI
                     EGIHLYLIVVGVIYNKGFLHKNFYIFGYLSPAVVVGFSASLGYRYYGTTKVCWLSTEN
                     NFIWSFIGPACLIILVNLLAFGVIIYKVFRHTAGLKPEVSCCENIRSCARGALALLFL
                     LGTTWIFGVLHVVHASVVTAYIFTVSNAFQGMFIFLFLCVLSRKIQEEYYRLFKNVPC
                     CFGCLR"
     misc_feature    489..635
                     /gene="ADGRL4"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(489..491,498..500,543..545)
                     /gene="ADGRL4"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    723..1295
                     /gene="ADGRL4"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     Region: GAIN; pfam16489"
                     /db_xref="CDD:465137"
     misc_feature    1416..1547
                     /gene="ADGRL4"
                     /note="GPCR proteolysis site, GPS, motif; Region: GPS;
                     pfam01825"
                     /db_xref="CDD:460350"
     misc_feature    1581..2354
                     /gene="ADGRL4"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    1590..1664
                     /gene="ADGRL4"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    1689..1754
                     /gene="ADGRL4"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    1782..1850
                     /gene="ADGRL4"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    1905..1955
                     /gene="ADGRL4"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    2010..2081
                     /gene="ADGRL4"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    2160..2228
                     /gene="ADGRL4"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    2238..2315
                     /gene="ADGRL4"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 gagggcaaca ccctgaacgc tgcccgcggg aaggggacag aatccccccg aggggtgcgc
       61 ggagcgcagc gggccggcag ccccgaggcc aggggtgagg tcagggtggc ctgggggccg
      121 ggcccggacg tggcctgcag actcagcgct ggacgagcgc actcacacaa aagaggccgg
      181 aaagtggcgg gaggaagcgg gcgcgtcacg ggggccgcag ccgggagcct ggcgcgcccg
      241 ccccgccgcg tcccaggtac acagcccgct cgccccgccg ctccgccacc gccaccgcca
      301 cgaccgcggc gccgccaatg agactccttc cgctcctagt gggtttttcc actttgctga
      361 attgttgcta cactcagaat tgtaccagga caccttgtct cccaaatgca aaatgtgaaa
      421 tacggaatgg agctgaaggc tgctattgca acattggatt ttcaggaaat ggtgtcacaa
      481 tttgtgaaga tatagatgaa tgcaatgaat catttgcctg tggagatcat gcaatgtgtg
      541 aaaatgtgga tggtggatat tactgctcct gcaaggaagg ttatacatcc acaggaaact
      601 cacagttcac acctaatgat ggcacttatt gccaagaaat tgtgaatcca gactgccatt
      661 tagataatat ctgtattgcg gcgaatatta ataaaacttt aacaaaaatt aggcacatag
      721 aagaacctgt agctttgcta caagaagtct atagaaattc tgtgaaagat ctttcaccga
      781 cggatataat tacatatata gaaatattag ctgaatcatc cccattactg ggttatatga
      841 atagcacgaa ttcggccaag gacacccttt ctaattcaac tcttactgaa tttgtaaaaa
      901 ctgtgaataa ttttgttcaa aaggatacat ttatagtttg ggacaagtta tctacaaacc
      961 atagaagaac tcatcttaca aaactgatac atgctgtgga gcaagctacc ttaaggctat
     1021 ctcagaactt tcaaaagacc actcagtttg atactaattc aagtgatata gctctcaaag
     1081 ttttcttttt tgattcatat cacatgaagc atattcatcc ccatatgaat atggacggag
     1141 ataatataaa gatatttcca aatagaaaag ctgcatatga ttcaaatggc agtgttgcag
     1201 ttgcattttt atattataag agtattggtc ctctattttc atcgtctgac aacatcttat
     1261 tggaacctca aagttatgat aaagctgaag aggagggaag agtcatctct tcagtaattt
     1321 cagtctcaat tagctcaaac ccacccacat tgtatgaatt cgaaaaaata acatttacat
     1381 taaatcacat aaagaccaca gataagtata ggagtcaatg tgcattttgg aactacttac
     1441 ctgacaccat gaatggcagc tggtcttcgg agggctgtga ggtgacatac tcaaatgtga
     1501 cccacacctc atgcagctgt aaccacctga cacattttgc aattttgatg tcttctggtt
     1561 cttctattgg tattaaagat tataatattc ttacaaggat cactcaacta ggaataatta
     1621 tttcactgat ttgccttgcc atatgcattt ttaccttctg gttcttcagt gaaattcaaa
     1681 gcaccaggac aacaattcac aaaaatctct gctgtagcct attccttgct gaacttgttt
     1741 ttcttgttgg gatcaataca aatactaata agctcttctg ttccatcatt gccgggctgc
     1801 tgcattactt ctttttagct gcctttgcat ggatgtgcat tgaaggcatc cacctctatc
     1861 tcattgttgt aggagtcatc tacaacaagg gatttttgca caagaatttt tatatctttg
     1921 gctatctcag cccagctgtg gtagttggat tttcagcatc attaggatat aggtattatg
     1981 gcaccaccaa agtatgttgg cttagcacag aaaacaactt tatttggagt tttataggac
     2041 cagcatgtct aatcatcctt gttaatctct tggcatttgg agttatcata tacaaagttt
     2101 ttcgtcacac tgcggggttg aaaccagaag ttagttgctg tgagaacata aggtcttgtg
     2161 ccagaggagc ccttgctctc ctgttcctcc ttggcaccac ctggatcttt ggagtgctcc
     2221 atgttgtgca tgcatcggtg gtgacagctt acatcttcac cgtcagcaat gccttccagg
     2281 ggatgttcat cttcttattc ctgtgtgttt tatctagaaa gatccaagaa gaatattata
     2341 gattgttcaa aaatgtccct tgttgtttcg gatgtttgag gtaaacagag agaactatgg
     2401 atcattattg ctacacagaa ataaagaagc caagctgtgg atggccaatg tataaaaatg
     2461 actcaaacaa attgtccaat tgttaatact aatcaaatat tttaagtcca tttttctgtg
     2521 gaagaaatgt agataatacg agataaaatt atgtaccata tagctatagt aagctttcct
     2581 acatgactta gttagctatg tcaaaaatag tattgcagat atttggaaag taactggttt
     2641 ctcagagtga tatcactgca cccaaggaaa gattttcttt ctaacacaaa aaatatatga
     2701 atgtcctgaa ggaaaccact ggcttgatat tttcttgatt catgttgcct ttgaaactag
     2761 tcccctatca ccttggtaat gagctccgtt acagaaagtg gaacataaga gaatgaagag
     2821 gtagaatata aaacagtaaa aagggaacga tggttgtaac aatgagacat attttgaaca
     2881 agctcgttgt tttgtaaact agatgggaaa ttagagataa aacaaacaat tgaataaaca
     2941 catcttacca ttctgtgaat tgttctgaac ttaaatttct accaaaacaa cttagacctg
     3001 tatttgttat atctattttc tattctaata gtctataaaa acacaaaact tcacaaaaaa
     3061 aaaaaaccta aacatttctg ttctgttttt aggttaacat cagaatgagg tatatgctct
     3121 ttctatactt atttcacaga ttgtgatttc aaatgcttat tcagtagtac ataaatgtgt
     3181 caaaatataa tattgttcat gcctgtaaat gtaaaaattg tgtatataaa cctgaagtac
     3241 tctgttccat aacctttcag tgtagtgaaa aatattgtat ctcattagac tagcatattt
     3301 gagtttattt tttttaaatt ttagaaatat tgtagttcac atcacaatat tctcttttaa
     3361 cttactattt ttaaaagggc attgtaaata tgaaagtatt cataaagtga attgctattt
     3421 ttttctgttc agaaaagtac acatttaaaa atgttattta taacaaagaa atcactggga
     3481 actgtataaa ctttcacact ggatctattt tctgacagtt ttcttctatt aaggcatatc
     3541 tgctaaaatg taaagcttct gtctatcttc aagttttctc attaaaatgt agacgcagtg
     3601 attttacttc aaaaaatatg taattgttct acacatacct taaaagtgtg ccaatacact
     3661 aaatgtgatt ttaacttaat ttctccagct gttaaagtga agtctgtcac atcttacact
     3721 aacaaataag atgatatctg aatgaatctt tttacagctt ggctgaggca tttctctaga
     3781 aagatgagct gcctgccaat gtcttaaaca tttttagagt atttgtgata actttttatt
     3841 tgatcttttg atctcttata tgacctatta ttatcattat cattatagga cagtgctatt
     3901 ggaataagat actaaaaaag taatctgttc aatcaatgta tacaaattat gtgtggtggg
     3961 cagaataatg gtcttcccaa aatgcccaca ccctaatctt gagaacacat gaatatgtta
     4021 ggttacgtgg agaggagaat taaccagcta acagctagtc ctctaacttt aacgtgagga
     4081 aattatcctg gatttttcag gttggtccca tgtaatcaca agtttcctta taaacaaaag
     4141 atggaggcag aagagggagc ctgttaaagc agtgccatac gaggcatact caaccacaca
     4201 ttgctagctt tgaagatgga aacagtccac aagccaaaga acatgggcag ctcctgtaat
     4261 ctgagaaagg caaggaaatg gattctcccc cagagctcct agaaggaagt cagccctgct
     4321 gtacttttgt tttagcccag ggagacccag tttggacttc taacatctaa aactgtaaaa
     4381 caataaatgt atattgcttt aaccaccaa
//
LOCUS       XM_032647638            4090 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adhesion G protein-coupled receptor L4
            (ADGRL4), transcript variant X3, mRNA.
ACCESSION   XM_032647638
VERSION     XM_032647638.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4090
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4090
                     /gene="ADGRL4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116761632"
     CDS             98..2065
                     /gene="ADGRL4"
                     /codon_start=1
                     /product="adhesion G protein-coupled receptor L4 isoform
                     X3"
                     /protein_id="XP_032503529.1"
                     /db_xref="GeneID:116761632"
                     /translation="MCAPGFRSSSKQDKFITNDGTICIDIDECNESFACGDHAMCENV
                     DGGYYCSCKEGYTSTGNSQFTPNDGTYCQEIVNPDCHLDNICIAANINKTLTKIRHIE
                     EPVALLQEVYRNSVKDLSPTDIITYIEILAESSPLLGYMNSTNSAKDTLSNSTLTEFV
                     KTVNNFVQKDTFIVWDKLSTNHRRTHLTKLIHAVEQATLRLSQNFQKTTQFDTNSSDI
                     ALKVFFFDSYHMKHIHPHMNMDGDNIKIFPNRKAAYDSNGSVAVAFLYYKSIGPLFSS
                     SDNILLEPQSYDKAEEEGRVISSVISVSISSNPPTLYEFEKITFTLNHIKTTDKYRSQ
                     CAFWNYLPDTMNGSWSSEGCEVTYSNVTHTSCSCNHLTHFAILMSSGSSIGIKDYNIL
                     TRITQLGIIISLICLAICIFTFWFFSEIQSTRTTIHKNLCCSLFLAELVFLVGINTNT
                     NKLFCSIIAGLLHYFFLAAFAWMCIEGIHLYLIVVGVIYNKGFLHKNFYIFGYLSPAV
                     VVGFSASLGYRYYGTTKVCWLSTENNFIWSFIGPACLIILVNLLAFGVIIYKVFRHTA
                     GLKPEVSCCENIRSCARGALALLFLLGTTWIFGVLHVVHASVVTAYIFTVSNAFQGMF
                     IFLFLCVLSRKIQEEYYRLFKNVPCCFGCLR"
     misc_feature    170..316
                     /gene="ADGRL4"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(170..172,179..181,224..226)
                     /gene="ADGRL4"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    404..976
                     /gene="ADGRL4"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     Region: GAIN; pfam16489"
                     /db_xref="CDD:465137"
     misc_feature    1097..1228
                     /gene="ADGRL4"
                     /note="GPCR proteolysis site, GPS, motif; Region: GPS;
                     pfam01825"
                     /db_xref="CDD:460350"
     misc_feature    1262..2035
                     /gene="ADGRL4"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    1271..1345
                     /gene="ADGRL4"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    1370..1435
                     /gene="ADGRL4"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    1463..1531
                     /gene="ADGRL4"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    1586..1636
                     /gene="ADGRL4"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    1691..1762
                     /gene="ADGRL4"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    1841..1909
                     /gene="ADGRL4"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    1919..1996
                     /gene="ADGRL4"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 ttgtgagata ctctcagatg ataatgagtg tggaaattta acgcagtcct gtggtgaaaa
       61 tgctaactgc acgaacacag aaggaagtta ctactgtatg tgtgcacctg gtttcagatc
      121 cagcagtaag caagacaagt ttattactaa tgatggaacc atctgcatag atatagatga
      181 atgcaatgaa tcatttgcct gtggagatca tgcaatgtgt gaaaatgtgg atggtggata
      241 ttactgctcc tgcaaggaag gttatacatc cacaggaaac tcacagttca cacctaatga
      301 tggcacttat tgccaagaaa ttgtgaatcc agactgccat ttagataata tctgtattgc
      361 ggcgaatatt aataaaactt taacaaaaat taggcacata gaagaacctg tagctttgct
      421 acaagaagtc tatagaaatt ctgtgaaaga tctttcaccg acggatataa ttacatatat
      481 agaaatatta gctgaatcat ccccattact gggttatatg aatagcacga attcggccaa
      541 ggacaccctt tctaattcaa ctcttactga atttgtaaaa actgtgaata attttgttca
      601 aaaggataca tttatagttt gggacaagtt atctacaaac catagaagaa ctcatcttac
      661 aaaactgata catgctgtgg agcaagctac cttaaggcta tctcagaact ttcaaaagac
      721 cactcagttt gatactaatt caagtgatat agctctcaaa gttttctttt ttgattcata
      781 tcacatgaag catattcatc cccatatgaa tatggacgga gataatataa agatatttcc
      841 aaatagaaaa gctgcatatg attcaaatgg cagtgttgca gttgcatttt tatattataa
      901 gagtattggt cctctatttt catcgtctga caacatctta ttggaacctc aaagttatga
      961 taaagctgaa gaggagggaa gagtcatctc ttcagtaatt tcagtctcaa ttagctcaaa
     1021 cccacccaca ttgtatgaat tcgaaaaaat aacatttaca ttaaatcaca taaagaccac
     1081 agataagtat aggagtcaat gtgcattttg gaactactta cctgacacca tgaatggcag
     1141 ctggtcttcg gagggctgtg aggtgacata ctcaaatgtg acccacacct catgcagctg
     1201 taaccacctg acacattttg caattttgat gtcttctggt tcttctattg gtattaaaga
     1261 ttataatatt cttacaagga tcactcaact aggaataatt atttcactga tttgccttgc
     1321 catatgcatt tttaccttct ggttcttcag tgaaattcaa agcaccagga caacaattca
     1381 caaaaatctc tgctgtagcc tattccttgc tgaacttgtt tttcttgttg ggatcaatac
     1441 aaatactaat aagctcttct gttccatcat tgccgggctg ctgcattact tctttttagc
     1501 tgcctttgca tggatgtgca ttgaaggcat ccacctctat ctcattgttg taggagtcat
     1561 ctacaacaag ggatttttgc acaagaattt ttatatcttt ggctatctca gcccagctgt
     1621 ggtagttgga ttttcagcat cattaggata taggtattat ggcaccacca aagtatgttg
     1681 gcttagcaca gaaaacaact ttatttggag ttttatagga ccagcatgtc taatcatcct
     1741 tgttaatctc ttggcatttg gagttatcat atacaaagtt tttcgtcaca ctgcggggtt
     1801 gaaaccagaa gttagttgct gtgagaacat aaggtcttgt gccagaggag cccttgctct
     1861 cctgttcctc cttggcacca cctggatctt tggagtgctc catgttgtgc atgcatcggt
     1921 ggtgacagct tacatcttca ccgtcagcaa tgccttccag gggatgttca tcttcttatt
     1981 cctgtgtgtt ttatctagaa agatccaaga agaatattat agattgttca aaaatgtccc
     2041 ttgttgtttc ggatgtttga ggtaaacaga gagaactatg gatcattatt gctacacaga
     2101 aataaagaag ccaagctgtg gatggccaat gtataaaaat gactcaaaca aattgtccaa
     2161 ttgttaatac taatcaaata ttttaagtcc atttttctgt ggaagaaatg tagataatac
     2221 gagataaaat tatgtaccat atagctatag taagctttcc tacatgactt agttagctat
     2281 gtcaaaaata gtattgcaga tatttggaaa gtaactggtt tctcagagtg atatcactgc
     2341 acccaaggaa agattttctt tctaacacaa aaaatatatg aatgtcctga aggaaaccac
     2401 tggcttgata ttttcttgat tcatgttgcc tttgaaacta gtcccctatc accttggtaa
     2461 tgagctccgt tacagaaagt ggaacataag agaatgaaga ggtagaatat aaaacagtaa
     2521 aaagggaacg atggttgtaa caatgagaca tattttgaac aagctcgttg ttttgtaaac
     2581 tagatgggaa attagagata aaacaaacaa ttgaataaac acatcttacc attctgtgaa
     2641 ttgttctgaa cttaaatttc taccaaaaca acttagacct gtatttgtta tatctatttt
     2701 ctattctaat agtctataaa aacacaaaac ttcacaaaaa aaaaaaacct aaacatttct
     2761 gttctgtttt taggttaaca tcagaatgag gtatatgctc tttctatact tatttcacag
     2821 attgtgattt caaatgctta ttcagtagta cataaatgtg tcaaaatata atattgttca
     2881 tgcctgtaaa tgtaaaaatt gtgtatataa acctgaagta ctctgttcca taacctttca
     2941 gtgtagtgaa aaatattgta tctcattaga ctagcatatt tgagtttatt ttttttaaat
     3001 tttagaaata ttgtagttca catcacaata ttctctttta acttactatt tttaaaaggg
     3061 cattgtaaat atgaaagtat tcataaagtg aattgctatt tttttctgtt cagaaaagta
     3121 cacatttaaa aatgttattt ataacaaaga aatcactggg aactgtataa actttcacac
     3181 tggatctatt ttctgacagt tttcttctat taaggcatat ctgctaaaat gtaaagcttc
     3241 tgtctatctt caagttttct cattaaaatg tagacgcagt gattttactt caaaaaatat
     3301 gtaattgttc tacacatacc ttaaaagtgt gccaatacac taaatgtgat tttaacttaa
     3361 tttctccagc tgttaaagtg aagtctgtca catcttacac taacaaataa gatgatatct
     3421 gaatgaatct ttttacagct tggctgaggc atttctctag aaagatgagc tgcctgccaa
     3481 tgtcttaaac atttttagag tatttgtgat aactttttat ttgatctttt gatctcttat
     3541 atgacctatt attatcatta tcattatagg acagtgctat tggaataaga tactaaaaaa
     3601 gtaatctgtt caatcaatgt atacaaatta tgtgtggtgg gcagaataat ggtcttccca
     3661 aaatgcccac accctaatct tgagaacaca tgaatatgtt aggttacgtg gagaggagaa
     3721 ttaaccagct aacagctagt cctctaactt taacgtgagg aaattatcct ggatttttca
     3781 ggttggtccc atgtaatcac aagtttcctt ataaacaaaa gatggaggca gaagagggag
     3841 cctgttaaag cagtgccata cgaggcatac tcaaccacac attgctagct ttgaagatgg
     3901 aaacagtcca caagccaaag aacatgggca gctcctgtaa tctgagaaag gcaaggaaat
     3961 ggattctccc ccagagctcc tagaaggaag tcagccctgc tgtacttttg ttttagccca
     4021 gggagaccca gtttggactt ctaacatcta aaactgtaaa acaataaatg tatattgctt
     4081 taaccaccaa
//
LOCUS       XM_032647652            2713 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pantothenate kinase 4 (inactive) (PANK4),
            transcript variant X1, mRNA.
ACCESSION   XM_032647652
VERSION     XM_032647652.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2713
                     /gene="PANK4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:116761645"
     CDS             15..2420
                     /gene="PANK4"
                     /codon_start=1
                     /product="4'-phosphopantetheine phosphatase isoform X1"
                     /protein_id="XP_032503543.1"
                     /db_xref="GeneID:116761645"
                     /translation="MAECGASGSGSGGDSLDKSITLPPDEIFRNLENAKRFAIDIGGS
                     LTKLAYYSTVQHKVARVRSFDHSDKDTEQDHEPPYEISVQEEVTARLHFVKFENTYIE
                     ACLDFIKDHLVNTETKVIQATGGGAYKFKDLIEEKLQLKVDKEDVMTCLIKGCNFVLK
                     NIPHEAFVYQKGSNPEFRFQTNHPSVFPYLLVSIGSGVSIVKVETEDRFEWIGGSSIG
                     GGTFWGLGALLTKTKKFDELLHLASRGQHTNVDMLVQDIYGGAHQTLGLSGNLIASSF
                     GKSATADTGTSHSPALALGGVWRPPGRLPSALLPPPEFSKEDMAKSLLHMISNDIGQL
                     ACLYARLHCLDRVYFGGFFIRGHPVTMRTITYSINFFSKGEVQALFLRHEGYLGAIGA
                     FLKGAEQDNPNQYSWEENYAGSSGLMSSSPELCPTQRPRSGTFDLLEMDRLERPLVNL
                     PLLLDPSSYVPDTVDLTDDALARKYWLTCFEEALDGVVKRAVASQPGSVDAAERAEKF
                     RQKYWSKLQALRHQPFAYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQKDNGVALKCF
                     RRVIHSLDALGWEERQLALVKGLLAGNVFDWGAKAVSDVLESDPQFGFEEAKRKLQER
                     PWLVDSYSKWLQRLKGPPHKCALIFADNSGVDVILGVFPFVRELLSRGTEVILACNSG
                     PALNDVTYSESLIVAERIAAMDPVIRSALREGRLLLMQTGSSSPCLDLSRLDKGLAVL
                     VRERGADLVVIEGMGRAVHTNYHAALRCESLKLAVIKNSWLAERLGGRLFSVIFKYEV
                     PAE"
     misc_feature    63..2411
                     /gene="PANK4"
                     /note="pantothenate kinase; Region: PLN02902"
                     /db_xref="CDD:215489"
     misc_feature    120..1196
                     /gene="PANK4"
                     /note="nucleotide-binding domain (NBD) of pantothenate
                     kinase 4 (Pank4) from type II pantothenate kinase
                     (PanK-II) subfamily; Region: ASKHA_NBD_PanK-II_Pank4;
                     cd24123"
                     /db_xref="CDD:466973"
ORIGIN      
        1 cgagcacagt caaaatggcg gagtgtggag cgagcggcag cgggagcggc ggggacagcc
       61 tggacaagag catcacactg ccccccgacg agatcttccg caacctggag aacgccaagc
      121 gcttcgccat agacataggt gggtcgctga ccaagctggc ctactactcc accgtacaac
      181 acaaagttgc cagagtgcgc tccttcgacc actcagacaa ggacacagag caggaccacg
      241 agccgcccta tgagatctcc gtccaggagg aggttaccgc caggctgcac tttgtcaagt
      301 tcgagaacac ctacatagaa gcctgcctgg acttcatcaa agaccacctg gtcaacaccg
      361 agaccaaggt catccaggca accgggggcg gggcgtacaa gttcaaagac ctcatcgaag
      421 agaagctgca gctgaaggtt gacaaggagg acgtgatgac ctgtctgatc aagggctgca
      481 acttcgtgct gaagaacatc ccgcacgagg ccttcgtgta ccagaagggc tccaaccccg
      541 agttccggtt tcagaccaac caccccagcg ttttcccgta cctcctagtc agcatcggct
      601 ctggggtctc tatcgtgaag gtggagacag aggacaggtt cgagtggatc ggcggcagct
      661 ccatcggggg tggcaccttc tgggggcttg gggctctgct caccaaaact aagaagtttg
      721 acgagctgct gcatctggct tccagaggcc agcacacgaa cgtggacatg ctggtgcagg
      781 acatctacgg aggggcccac cagaccctgg ggctgagcgg caacctcata gcgagcagct
      841 tcgggaagtc ggccaccgcg gacacaggta ccagccactc gcccgctctc gctctcggag
      901 gcgtgtggcg cccacctggc cgcttgccca gcgcgctgct tccgccccca gagttctcca
      961 aggaggacat ggccaagagc ctgctgcaca tgatcagcaa cgacatcggg cagctcgcct
     1021 gcctgtacgc caggctccac tgcttggacc gggtgtactt cggcggcttt ttcatccgcg
     1081 gccaccccgt caccatgcgc accatcacct acagcatcaa cttcttctcc aagggggagg
     1141 tccaggcgct gttcttgagg cacgaaggct acctgggcgc cataggagcg tttcttaaag
     1201 gagccgagca ggacaaccca aaccagtaca gctgggaaga gaactacgcc ggcagctccg
     1261 ggctcatgag ctcctcgccc gagctctgcc caacgcagcg gccgaggagt ggcaccttcg
     1321 acttgctgga aatggaccgt ctggagaggc cgctcgtcaa cctgcctctc cttctggacc
     1381 catcctccta cgtgcctgac acggtcgacc tcacagacga cgcgctggcc cgaaagtact
     1441 ggctcacctg ctttgaggag gccctggacg gggtcgtgaa acgcgccgtg gcgagccagc
     1501 caggctccgt ggatgcagcc gagagggccg agaagttccg ccagaagtac tggagcaagc
     1561 tgcaggcgct gcggcaccag cccttcgctt atgggaccct gactgtgcgc agcctcctgg
     1621 acacgaggga gcactgtttg aacgagttca acttcccgga cccctactcc aaggtgaagc
     1681 agaaggacaa cggcgtggca ttaaagtgtt tccggagggt gatccactct ctggacgccc
     1741 tgggctggga ggagaggcag ctggccctgg tgaaagggct tctggccggc aacgtcttcg
     1801 actggggagc gaaagccgtc tctgacgtcc ttgaatctga cccccagttt gggtttgagg
     1861 aggcaaagag gaagctgcaa gagcggccct ggctcgtgga ctcctacagc aagtggcttc
     1921 agagactgaa ggggccccct cacaaatgtg ccttaatttt cgcagataac agtggagtag
     1981 acgtcatttt gggagtcttc ccctttgtca gggagcttct ctctagaggg acggaggtca
     2041 tcttggcgtg caactcggga cccgccttga acgacgtgac ctacagcgag tccctcatcg
     2101 tggccgagcg catcgcggcc atggaccccg tcatccgctc ggcgctcaga gaagggaggc
     2161 tgctgctcat gcagactggc tccagctccc cgtgtctcga cctcagccgc ctggacaagg
     2221 ggctggccgt gctggtgcgg gagcgcggcg ccgacctggt ggtcatcgag ggcatgggcc
     2281 gcgccgtcca caccaactac cacgcagccc tgcgctgcga gagcctcaag ctggccgtca
     2341 tcaagaactc gtggctggcc gagcggctgg gtggccggct cttcagcgtc atcttcaagt
     2401 acgaggtccc ggccgagtga ggcgccaccg ccgctgggct gctctgcccg tcgcctcagg
     2461 aacgtatctc gactgcaaca gggacccgcg ttcaaatcgg aatatttatg agagagccgg
     2521 ctgcgcccag gtgtgggctc agcgctcgtg gcctcgggct tggtgtatct tcagtgctga
     2581 cgtgttcgtg gtggggagac acgacttttg tcccgtgaga cgttcttatt ggaatatatt
     2641 taactgttaa ataatctttt atatatatat acatatatac atatatatat atatataaaa
     2701 atataaatat ata
//
LOCUS       XM_032647662            2687 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pantothenate kinase 4 (inactive) (PANK4),
            transcript variant X2, mRNA.
ACCESSION   XM_032647662
VERSION     XM_032647662.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2687
                     /gene="PANK4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761645"
     CDS             15..2336
                     /gene="PANK4"
                     /codon_start=1
                     /product="4'-phosphopantetheine phosphatase isoform X2"
                     /protein_id="XP_032503553.1"
                     /db_xref="GeneID:116761645"
                     /translation="MAECGASGSGSGGDSLDKSITLPPDEIFRNLENAKRFAIDIGGS
                     LTKLAYYSTVQHKVARVRSFDHSDKDTEQDHEPPYEISVQEEVTARLHFVKFENTYIE
                     ACLDFIKDHLVNTETKVIQATGGGAYKFKDLIEEKLQLKVDKEDVMTCLIKGCNFVLK
                     NIPHEAFVYQKGSNPEFRFQTNHPSVFPYLLVSIGSGVSIVKVETEDRFEWIGGSSIG
                     GGTFWGLGALLTKTKKFDELLHLASRGQHTNVDMLVQDIYGGAHQTLGLSGNLIASSF
                     GKSATADTEFSKEDMAKSLLHMISNDIGQLACLYARLHCLDRVYFGGFFIRGHPVTMR
                     TITYSINFFSKGEVQALFLRHEGYLGAIGAFLKGAEQDNPNQYSWEENYAGSSGLMSS
                     SPELCPTQRPRSGTFDLLEMDRLERPLVNLPLLLDPSSYVPDTVDLTDDALARKYWLT
                     CFEEALDGVVKRAVASQPGSVDAAERAEKFRQKYWSKLQALRHQPFAYGTLTVRSLLD
                     TREHCLNEFNFPDPYSKVKQKDNGVALKCFRRVIHSLDALGWEERQLALVKGLLAGNV
                     FDWGAKAVSDVLESDPQFGFEEAKRKLQERPWLVDSYSKWLQRLKGPPHKCALIFADN
                     SGVDVILGVFPFVRELLSRGTEVILACNSGPALNDVTYSESLIVAERIAAMDPVIRSA
                     LREGRLLLMQTGSSSPCLDLSRLDKGLAVLVRERGADLVVIEGMGRAVHTNYHAALRC
                     ESLKLAVIKNSWLAERLGGRLFSVIFKYEVPAE"
     misc_feature    63..2327
                     /gene="PANK4"
                     /note="pantothenate kinase; Region: PLN02902"
                     /db_xref="CDD:215489"
ORIGIN      
        1 cgagcacagt caaaatggcg gagtgtggag cgagcggcag cgggagcggc ggggacagcc
       61 tggacaagag catcacactg ccccccgacg agatcttccg caacctggag aacgccaagc
      121 gcttcgccat agacataggt gggtcgctga ccaagctggc ctactactcc accgtacaac
      181 acaaagttgc cagagtgcgc tccttcgacc actcagacaa ggacacagag caggaccacg
      241 agccgcccta tgagatctcc gtccaggagg aggttaccgc caggctgcac tttgtcaagt
      301 tcgagaacac ctacatagaa gcctgcctgg acttcatcaa agaccacctg gtcaacaccg
      361 agaccaaggt catccaggca accgggggcg gggcgtacaa gttcaaagac ctcatcgaag
      421 agaagctgca gctgaaggtt gacaaggagg acgtgatgac ctgtctgatc aagggctgca
      481 acttcgtgct gaagaacatc ccgcacgagg ccttcgtgta ccagaagggc tccaaccccg
      541 agttccggtt tcagaccaac caccccagcg ttttcccgta cctcctagtc agcatcggct
      601 ctggggtctc tatcgtgaag gtggagacag aggacaggtt cgagtggatc ggcggcagct
      661 ccatcggggg tggcaccttc tgggggcttg gggctctgct caccaaaact aagaagtttg
      721 acgagctgct gcatctggct tccagaggcc agcacacgaa cgtggacatg ctggtgcagg
      781 acatctacgg aggggcccac cagaccctgg ggctgagcgg caacctcata gcgagcagct
      841 tcgggaagtc ggccaccgcg gacacagagt tctccaagga ggacatggcc aagagcctgc
      901 tgcacatgat cagcaacgac atcgggcagc tcgcctgcct gtacgccagg ctccactgct
      961 tggaccgggt gtacttcggc ggctttttca tccgcggcca ccccgtcacc atgcgcacca
     1021 tcacctacag catcaacttc ttctccaagg gggaggtcca ggcgctgttc ttgaggcacg
     1081 aaggctacct gggcgccata ggagcgtttc ttaaaggagc cgagcaggac aacccaaacc
     1141 agtacagctg ggaagagaac tacgccggca gctccgggct catgagctcc tcgcccgagc
     1201 tctgcccaac gcagcggccg aggagtggca ccttcgactt gctggaaatg gaccgtctgg
     1261 agaggccgct cgtcaacctg cctctccttc tggacccatc ctcctacgtg cctgacacgg
     1321 tcgacctcac agacgacgcg ctggcccgaa agtactggct cacctgcttt gaggaggccc
     1381 tggacggggt cgtgaaacgc gccgtggcga gccagccagg ctccgtggat gcagccgaga
     1441 gggccgagaa gttccgccag aagtactgga gcaagctgca ggcgctgcgg caccagccct
     1501 tcgcttatgg gaccctgact gtgcgcagcc tcctggacac gagggagcac tgtttgaacg
     1561 agttcaactt cccggacccc tactccaagg tgaagcagaa ggacaacggc gtggcattaa
     1621 agtgtttccg gagggtgatc cactctctgg acgccctggg ctgggaggag aggcagctgg
     1681 ccctggtgaa agggcttctg gccggcaacg tcttcgactg gggagcgaaa gccgtctctg
     1741 acgtccttga atctgacccc cagtttgggt ttgaggaggc aaagaggaag ctgcaagagc
     1801 ggccctggct cgtggactcc tacagcaagt ggcttcagag actgaagggg ccccctcaca
     1861 aatgtgcctt aattttcgca gataacagtg gagtagacgt cattttggga gtcttcccct
     1921 ttgtcaggga gcttctctct agagggacgg aggtcatctt ggcgtgcaac tcgggacccg
     1981 ccttgaacga cgtgacctac agcgagtccc tcatcgtggc cgagcgcatc gcggccatgg
     2041 accccgtcat ccgctcggcg ctcagagaag ggaggctgct gctcatgcag actggctcca
     2101 gctccccgtg tctcgacctc agccgcctgg acaaggggct ggccgtgctg gtgcgggagc
     2161 gcggcgccga cctggtggtc atcgagggca tgggccgcgc cgtccacacc aactaccacg
     2221 cagccctgcg ctgcgagagc ctcaagctgg ccgtcatcaa gaactcgtgg ctggccgagc
     2281 ggctgggtgg ccggctcttc agcgtcatct tcaagtacga ggtcccggcc gagtgaggcg
     2341 ccaccgccgc tgggctgctc tgcccgtcgc ctcaggaacg tatctcgact gcaacaggga
     2401 cccgcgttca aatcggaata tttatgagag agccggctgc gcccaggtgt gggctcagcg
     2461 ctcgtggcct cgggcttggt gtatcttcag tgctgacgtg ttcgtggtgg ggagacacga
     2521 cttttgtccc gtgagacgtt cttattggaa tatatttaac tgttaaataa tcttttatat
     2581 atatatacat atatacatat atatatatat ataaaaatat aaatatatac gtatacgcct
     2641 ctgacgggac gctgaggtca gggcacggca aatagtttcc agagtga
//
LOCUS       XM_032647672            2359 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pantothenate kinase 4 (inactive) (PANK4),
            transcript variant X3, mRNA.
ACCESSION   XM_032647672
VERSION     XM_032647672.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2359
                     /gene="PANK4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116761645"
     CDS             15..2225
                     /gene="PANK4"
                     /codon_start=1
                     /product="4'-phosphopantetheine phosphatase isoform X3"
                     /protein_id="XP_032503563.1"
                     /db_xref="GeneID:116761645"
                     /translation="MAECGASGSGSGGDSLDKSITLPPDEIFRNLENAKRFAIDIGGS
                     LTKLAYYSTVQHKVARVRSFDHSDKDTEQDHEPPYEISVQEEVTARLHFVKFENTYIE
                     ACLDFIKDHLVNTETKVIQATGGGAYKFKDLIEEKLQLKVDKEDVMTCLIKGCNFVLK
                     NIPHEAFVYQKGSNPEFRFQTNHPSVFPYLLVSIGSGVSIVKVETEDRFEWIGGSSIG
                     GGTFWGLGALLTKTKKFDELLHLASRGQHTNVDMLVQDIYGGAHQTLGLSGNLIASSF
                     GKSATADTGTSHSPALALGGVWRPPGRLPSALLPPPEFSKEDMAKSLLHMISNDIGQL
                     ACLYARLHCLDRVYFGGFFIRGHPVTMRTITYSINFFSKGEVQALFLRHEGYLGAIGA
                     FLKGAEQDNPNQYSWEENYAGSSGLMSSSPELCPTQRPRSGTFDLLEMDRLERPLVNL
                     PLLLDPSSYVPDTVDLTDDALARKYWLTCFEEALDGVVKRAVASQPGSVDAAERAEKF
                     RQKYWSKLQALRHQPFAYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQKDNGVALKCF
                     RRVIHSLDALGWEERQLALVKGLLAGNVFDWGAKAVSDVLESDPQFGFEEAKRKLQER
                     PWLVDSYSKWLQRLKGPPHKCALIFADNSGVDVILGVFPFVRELLSRGTEVILACNSG
                     PALNDVTYSESLIVAERIAAMDPVIRSALREGRLLLMQTGSSSPCLDLSTWSGV"
     misc_feature    120..1196
                     /gene="PANK4"
                     /note="nucleotide-binding domain (NBD) of pantothenate
                     kinase 4 (Pank4) from type II pantothenate kinase
                     (PanK-II) subfamily; Region: ASKHA_NBD_PanK-II_Pank4;
                     cd24123"
                     /db_xref="CDD:466973"
     misc_feature    1449..>2207
                     /gene="PANK4"
                     /note="Damage-control phosphatase ARMT1-like domain;
                     Region: ARMT1-like_dom; pfam01937"
                     /db_xref="CDD:396496"
ORIGIN      
        1 cgagcacagt caaaatggcg gagtgtggag cgagcggcag cgggagcggc ggggacagcc
       61 tggacaagag catcacactg ccccccgacg agatcttccg caacctggag aacgccaagc
      121 gcttcgccat agacataggt gggtcgctga ccaagctggc ctactactcc accgtacaac
      181 acaaagttgc cagagtgcgc tccttcgacc actcagacaa ggacacagag caggaccacg
      241 agccgcccta tgagatctcc gtccaggagg aggttaccgc caggctgcac tttgtcaagt
      301 tcgagaacac ctacatagaa gcctgcctgg acttcatcaa agaccacctg gtcaacaccg
      361 agaccaaggt catccaggca accgggggcg gggcgtacaa gttcaaagac ctcatcgaag
      421 agaagctgca gctgaaggtt gacaaggagg acgtgatgac ctgtctgatc aagggctgca
      481 acttcgtgct gaagaacatc ccgcacgagg ccttcgtgta ccagaagggc tccaaccccg
      541 agttccggtt tcagaccaac caccccagcg ttttcccgta cctcctagtc agcatcggct
      601 ctggggtctc tatcgtgaag gtggagacag aggacaggtt cgagtggatc ggcggcagct
      661 ccatcggggg tggcaccttc tgggggcttg gggctctgct caccaaaact aagaagtttg
      721 acgagctgct gcatctggct tccagaggcc agcacacgaa cgtggacatg ctggtgcagg
      781 acatctacgg aggggcccac cagaccctgg ggctgagcgg caacctcata gcgagcagct
      841 tcgggaagtc ggccaccgcg gacacaggta ccagccactc gcccgctctc gctctcggag
      901 gcgtgtggcg cccacctggc cgcttgccca gcgcgctgct tccgccccca gagttctcca
      961 aggaggacat ggccaagagc ctgctgcaca tgatcagcaa cgacatcggg cagctcgcct
     1021 gcctgtacgc caggctccac tgcttggacc gggtgtactt cggcggcttt ttcatccgcg
     1081 gccaccccgt caccatgcgc accatcacct acagcatcaa cttcttctcc aagggggagg
     1141 tccaggcgct gttcttgagg cacgaaggct acctgggcgc cataggagcg tttcttaaag
     1201 gagccgagca ggacaaccca aaccagtaca gctgggaaga gaactacgcc ggcagctccg
     1261 ggctcatgag ctcctcgccc gagctctgcc caacgcagcg gccgaggagt ggcaccttcg
     1321 acttgctgga aatggaccgt ctggagaggc cgctcgtcaa cctgcctctc cttctggacc
     1381 catcctccta cgtgcctgac acggtcgacc tcacagacga cgcgctggcc cgaaagtact
     1441 ggctcacctg ctttgaggag gccctggacg gggtcgtgaa acgcgccgtg gcgagccagc
     1501 caggctccgt ggatgcagcc gagagggccg agaagttccg ccagaagtac tggagcaagc
     1561 tgcaggcgct gcggcaccag cccttcgctt atgggaccct gactgtgcgc agcctcctgg
     1621 acacgaggga gcactgtttg aacgagttca acttcccgga cccctactcc aaggtgaagc
     1681 agaaggacaa cggcgtggca ttaaagtgtt tccggagggt gatccactct ctggacgccc
     1741 tgggctggga ggagaggcag ctggccctgg tgaaagggct tctggccggc aacgtcttcg
     1801 actggggagc gaaagccgtc tctgacgtcc ttgaatctga cccccagttt gggtttgagg
     1861 aggcaaagag gaagctgcaa gagcggccct ggctcgtgga ctcctacagc aagtggcttc
     1921 agagactgaa ggggccccct cacaaatgtg ccttaatttt cgcagataac agtggagtag
     1981 acgtcatttt gggagtcttc ccctttgtca gggagcttct ctctagaggg acggaggtca
     2041 tcttggcgtg caactcggga cccgccttga acgacgtgac ctacagcgag tccctcatcg
     2101 tggccgagcg catcgcggcc atggaccccg tcatccgctc ggcgctcaga gaagggaggc
     2161 tgctgctcat gcagactggc tccagctccc cgtgtctcga cctcagcacc tggagcggcg
     2221 tgtagaggag ggcacatctg ggctcgggga ccgtcagcct ctcagtctgt tccagcgctg
     2281 atcctccagt gttgatttac tccccttcca ggtccactat taaccaacaa ggagggacaa
     2341 taaaaagcta tggaaagga
//
LOCUS       XM_032647681            2275 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pantothenate kinase 4 (inactive) (PANK4),
            transcript variant X4, mRNA.
ACCESSION   XM_032647681
VERSION     XM_032647681.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2275
                     /gene="PANK4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761645"
     CDS             15..2141
                     /gene="PANK4"
                     /codon_start=1
                     /product="4'-phosphopantetheine phosphatase isoform X4"
                     /protein_id="XP_032503572.1"
                     /db_xref="GeneID:116761645"
                     /translation="MAECGASGSGSGGDSLDKSITLPPDEIFRNLENAKRFAIDIGGS
                     LTKLAYYSTVQHKVARVRSFDHSDKDTEQDHEPPYEISVQEEVTARLHFVKFENTYIE
                     ACLDFIKDHLVNTETKVIQATGGGAYKFKDLIEEKLQLKVDKEDVMTCLIKGCNFVLK
                     NIPHEAFVYQKGSNPEFRFQTNHPSVFPYLLVSIGSGVSIVKVETEDRFEWIGGSSIG
                     GGTFWGLGALLTKTKKFDELLHLASRGQHTNVDMLVQDIYGGAHQTLGLSGNLIASSF
                     GKSATADTEFSKEDMAKSLLHMISNDIGQLACLYARLHCLDRVYFGGFFIRGHPVTMR
                     TITYSINFFSKGEVQALFLRHEGYLGAIGAFLKGAEQDNPNQYSWEENYAGSSGLMSS
                     SPELCPTQRPRSGTFDLLEMDRLERPLVNLPLLLDPSSYVPDTVDLTDDALARKYWLT
                     CFEEALDGVVKRAVASQPGSVDAAERAEKFRQKYWSKLQALRHQPFAYGTLTVRSLLD
                     TREHCLNEFNFPDPYSKVKQKDNGVALKCFRRVIHSLDALGWEERQLALVKGLLAGNV
                     FDWGAKAVSDVLESDPQFGFEEAKRKLQERPWLVDSYSKWLQRLKGPPHKCALIFADN
                     SGVDVILGVFPFVRELLSRGTEVILACNSGPALNDVTYSESLIVAERIAAMDPVIRSA
                     LREGRLLLMQTGSSSPCLDLSTWSGV"
     misc_feature    63..2120
                     /gene="PANK4"
                     /note="pantothenate kinase; Region: PLN02902"
                     /db_xref="CDD:215489"
     misc_feature    120..1112
                     /gene="PANK4"
                     /note="nucleotide-binding domain (NBD) of pantothenate
                     kinase 4 (Pank4) from type II pantothenate kinase
                     (PanK-II) subfamily; Region: ASKHA_NBD_PanK-II_Pank4;
                     cd24123"
                     /db_xref="CDD:466973"
ORIGIN      
        1 cgagcacagt caaaatggcg gagtgtggag cgagcggcag cgggagcggc ggggacagcc
       61 tggacaagag catcacactg ccccccgacg agatcttccg caacctggag aacgccaagc
      121 gcttcgccat agacataggt gggtcgctga ccaagctggc ctactactcc accgtacaac
      181 acaaagttgc cagagtgcgc tccttcgacc actcagacaa ggacacagag caggaccacg
      241 agccgcccta tgagatctcc gtccaggagg aggttaccgc caggctgcac tttgtcaagt
      301 tcgagaacac ctacatagaa gcctgcctgg acttcatcaa agaccacctg gtcaacaccg
      361 agaccaaggt catccaggca accgggggcg gggcgtacaa gttcaaagac ctcatcgaag
      421 agaagctgca gctgaaggtt gacaaggagg acgtgatgac ctgtctgatc aagggctgca
      481 acttcgtgct gaagaacatc ccgcacgagg ccttcgtgta ccagaagggc tccaaccccg
      541 agttccggtt tcagaccaac caccccagcg ttttcccgta cctcctagtc agcatcggct
      601 ctggggtctc tatcgtgaag gtggagacag aggacaggtt cgagtggatc ggcggcagct
      661 ccatcggggg tggcaccttc tgggggcttg gggctctgct caccaaaact aagaagtttg
      721 acgagctgct gcatctggct tccagaggcc agcacacgaa cgtggacatg ctggtgcagg
      781 acatctacgg aggggcccac cagaccctgg ggctgagcgg caacctcata gcgagcagct
      841 tcgggaagtc ggccaccgcg gacacagagt tctccaagga ggacatggcc aagagcctgc
      901 tgcacatgat cagcaacgac atcgggcagc tcgcctgcct gtacgccagg ctccactgct
      961 tggaccgggt gtacttcggc ggctttttca tccgcggcca ccccgtcacc atgcgcacca
     1021 tcacctacag catcaacttc ttctccaagg gggaggtcca ggcgctgttc ttgaggcacg
     1081 aaggctacct gggcgccata ggagcgtttc ttaaaggagc cgagcaggac aacccaaacc
     1141 agtacagctg ggaagagaac tacgccggca gctccgggct catgagctcc tcgcccgagc
     1201 tctgcccaac gcagcggccg aggagtggca ccttcgactt gctggaaatg gaccgtctgg
     1261 agaggccgct cgtcaacctg cctctccttc tggacccatc ctcctacgtg cctgacacgg
     1321 tcgacctcac agacgacgcg ctggcccgaa agtactggct cacctgcttt gaggaggccc
     1381 tggacggggt cgtgaaacgc gccgtggcga gccagccagg ctccgtggat gcagccgaga
     1441 gggccgagaa gttccgccag aagtactgga gcaagctgca ggcgctgcgg caccagccct
     1501 tcgcttatgg gaccctgact gtgcgcagcc tcctggacac gagggagcac tgtttgaacg
     1561 agttcaactt cccggacccc tactccaagg tgaagcagaa ggacaacggc gtggcattaa
     1621 agtgtttccg gagggtgatc cactctctgg acgccctggg ctgggaggag aggcagctgg
     1681 ccctggtgaa agggcttctg gccggcaacg tcttcgactg gggagcgaaa gccgtctctg
     1741 acgtccttga atctgacccc cagtttgggt ttgaggaggc aaagaggaag ctgcaagagc
     1801 ggccctggct cgtggactcc tacagcaagt ggcttcagag actgaagggg ccccctcaca
     1861 aatgtgcctt aattttcgca gataacagtg gagtagacgt cattttggga gtcttcccct
     1921 ttgtcaggga gcttctctct agagggacgg aggtcatctt ggcgtgcaac tcgggacccg
     1981 ccttgaacga cgtgacctac agcgagtccc tcatcgtggc cgagcgcatc gcggccatgg
     2041 accccgtcat ccgctcggcg ctcagagaag ggaggctgct gctcatgcag actggctcca
     2101 gctccccgtg tctcgacctc agcacctgga gcggcgtgta gaggagggca catctgggct
     2161 cggggaccgt cagcctctca gtctgttcca gcgctgatcc tccagtgttg atttactccc
     2221 cttccaggtc cactattaac caacaaggag ggacaataaa aagctatgga aagga
//
LOCUS       XR_004352074            2103 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pantothenate kinase 4 (inactive) (PANK4),
            transcript variant X5, misc_RNA.
ACCESSION   XR_004352074
VERSION     XR_004352074.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2103
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2103
                     /gene="PANK4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:116761645"
     misc_RNA        1..2103
                     /gene="PANK4"
                     /product="pantothenate kinase 4 (inactive), transcript
                     variant X5"
                     /db_xref="GeneID:116761645"
ORIGIN      
        1 cgagcacagt caaaatggcg gagtgtggag cgagcggcag cgggagcggc ggggacagcc
       61 tggacaagag catcacactg ccccccgacg agatcttccg caacctggag aacgccaagc
      121 gcttcgccat agacataggt gggtcgctga ccaagctggc ctactactcc accgtacaac
      181 acaaagttgc cagagtgcgc tccttcgacc actcagacaa ggacacagag caggaccacg
      241 agccgcccta tgagatctcc gtccaggagg aggttaccgc caggctgcac tttgtcaagt
      301 tcgagaacac ctacatagaa gcctgcctgg acttcatcaa agaccacctg gtcaacaccg
      361 agaccaaggt catccaggca accgggggcg gggcgtacaa gttcaaagac ctcatcgaag
      421 agaagctgca gctgaaggtt gacaaggagg acgtgatgac ctgtctgatc aagggctgca
      481 acttcgtgct gaagaacatc ccgcacgagg ccttcgtgta ccagaagggc tccaaccccg
      541 agttccggtt tcagaccaac caccccagcg ttttcccgta cctcctagtc agcatcggct
      601 ctggggtctc tatcgtgaag gtggagacag aggacaggtt cgagtggatc ggcggcagct
      661 ccatcggggg tggcaccttc tgggggcttg gggctctgct caccaaaact aagaagtttg
      721 acgagctgct gcatctggct tccagaggcc agcacacgaa cgtggacatg ctggtgcagg
      781 acatctacgg aggggcccac cagaccctgg ggctgagcgg caacctcata gcgagcagct
      841 tcgggaagtc ggccaccgcg gacacaggta ccagccactc gcccgctctc gctctcggag
      901 gcgtgtggcg cccacctggc cgcttgccca gcgcgctgct tccgccccca gagttctcca
      961 aggaggacat ggccaagagc ctgctgcaca tgatcagcaa cgacatcggg cagctcgcct
     1021 gcctgtacgc caggctccac tgcttggacc gggtgtactt cggcggcttt ttcatccgcg
     1081 gccaccccgt caccatgcgc accatcacct acagcatcaa cttcttctcc aagggggagg
     1141 tccaggcgct gttcttgagg cacgaaggct acctgggcgc cataggagcg tttcttaaag
     1201 gagccgagca ggacaaccca aaccagtaca gctgggaaga gaactacgcc ggcagctccg
     1261 ggctcatgag ctcctcgccc gagctctgcc caacgcagcg gccgaggagt ggcaccttcg
     1321 acttgctgga aatggaccgt ctggagaggc cgctcgtcaa cctgcctctc cttctggacc
     1381 catcctccta cgtgcctgac acggtcgacc tcacagacga cgcgctggcc cgaaagtact
     1441 ggctcacctg ctttgaggag gccctggacg gggtcgtgaa acgcgccgtg gcgagccagc
     1501 caggctccgt ggatgcagcc gagagggccg agaagttccg ccagaagtac tggagcaagc
     1561 tgcaggcgct gcggcaccag cccttcgctt atgggaccct gactgtgcgc agcctcctgg
     1621 acacgaggga gcactgtttg aacgagttca acttcccgga cccctactcc aaggtgaagc
     1681 agaaggacaa cggcgtggca ttaaagtgtt tccggagggt gatccactct ctggacgccc
     1741 tgggctggga ggagaggcag ctggccctgg tgaaagggct tctggccggc aacgtcttcg
     1801 actggggagc gaaagccgtc tctgacgtcc ttgaatctga cccccagttt gggtttgagg
     1861 aggcaaagag gaagctgcaa gagcggccct ggctcgtgga ctcctacagc aagtggcttc
     1921 agagactgaa gataacagtg gagtagacgt cattttggga gtcttcccct ttgtcaggga
     1981 gcttctctct agagggacgg aggtcatctt ggcgtgcaac tcgggacccg ccttgaacga
     2041 cgtgacctac agcgagtccc tcatcgtggc cgagcgcatc gcggccatgg accccgtcat
     2101 ccg
//
LOCUS       XM_032647698            5575 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X1, mRNA.
ACCESSION   XM_032647698
VERSION     XM_032647698.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5575
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5575
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             542..5440
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X1"
                     /protein_id="XP_032503589.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARQGLGAGGQKGDRGDPGIQGLKGE
                     KGESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGE
                     AGPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHP
                     GFGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGD
                     GCTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQG
                     EPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPA
                     GASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGAP
                     GLWMGSSWQPGPQGPPGIPGPPGPPGMPGLQDLPHGTFGVPGNNGLPGQPGLTAELGS
                     LPIEQHVLKSICGDCVQRQTAHPAALLESGEKGDQGIPGVPGLDSCARCFTERERPRA
                     EEARGDNGEGDAGCAGSPGLPGAPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVG
                     SPGLPGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGE
                     SGPPGSEGLPGPPGPAGPRGERGPQGNLGEKGDQGFQGQPGFPGPLGPPGFPGKAGAP
                     GPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAG
                     PPGLMGPPGFKGKPGHPGLPGLKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGH
                     VGPPGSPGQPGPAGISAVGPKGDRGSTGERGLSGLPGQPGPPGHPGPPGEPGADGEAG
                     KEGPPGKQGIYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPSGPPGPAGE
                     RGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPM
                     EMAAAPGRPGPPGKDGPPGRPGAPGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDTG
                     VGIAGEVGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGAPGSMGPPGKAGHCNPSD
                     CFGAMPMEQEYPPMKNMKGPFG"
     misc_feature    689..1234
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1532..>2245
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2087..>2950
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2807..>3229
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3644..>4441
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4145..>4876
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4556..>5365
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 ggccggactc cccgcccacc cgcctaccgc cagagcccct tgcagggcaa ctccgggcac
       61 gcagggtccc gccttgctcg ctcgcttacc tggcgcgggg caagtgggag ggatgggctt
      121 gggagcgccg ccaggccagg agtgggcctt gcgtcctgcc gcctctgcca ccgctggaga
      181 cccctcccgg tcctccctcc ctcctcctgc ctggcgggcg ggtccagctg tgttccatta
      241 gcggccctgg caagtcccca gccccctgga gcctccccct cttcccccac ccggagtggc
      301 cggcagtccc cggcaggcga gcgggcatgc gagcggggca gcattcagcc ccagaagctc
      361 aggacagggg aaactgggga cccgaggccg gccagaagta atcgaggacc ttccagcggg
      421 tctgaagaac ccaggccctg cttcccgcgg ttcgctgcgt tgggctgcct ggattacaca
      481 gtgaggtggt ggggatcccc agccacggtg ctgtggctgc ggccgacttc tttggaccag
      541 gatgtgggca tcttgggctc ctggcttgtg gctgctcagt ctctgtgtta tctgcagcca
      601 tgaggcagat acaggggagc ggtgcccacc ttcacagcaa gaaggactca agttggaaca
      661 cagaagcgac ttatcgacca acgtgactgg cttcggtctc atccgccgac tcaacctcat
      721 gaagatatct gccattaaga agatccgaaa ccccaaggga cctctcatcc tgcgactggg
      781 agcggtctca gtcacccagc ccgtgcgacg tgtattccct cggggcctcc ccagtgagtt
      841 tgccctggtg ctgacactac tgctgaagaa acacacccac cagaatacgt ggtatttgtt
      901 tcaagtgacc gatggaaatg ggtacccgca gatttccctg gaagtcaaca gccaagagcg
      961 gagcctggag ttccgggccc ggggccaaga tggcgacttt gtgtcctgca tcttctcagt
     1021 gccccagctc tttgacctgc gttggcacaa gctgatgctg agcgtggctg aacgcgtagc
     1081 ctctgtgcac gtggactgca catcagtctc ctcccggcct ctggggccct ggcgacccat
     1141 gcagcctgtg ggccatgttt ttctgggctt agatgctgag cagggcaaac ctgtcttgtt
     1201 tgaccttcag caggcacaca tctactgtga cccggatctt gtgctggagg agggctgctg
     1261 tgagattttg ccgggagggt gtcccccaga gacctccaag gcccgccggg acacgcagag
     1321 caatgagctc atcgagatca atccacagac tgagggcaag gtctacaccc gctgcttctg
     1381 cctggaggag ccgcaaaaca gcaaggtggg cgcccagctg acgggaagaa tcagccagga
     1441 ggcagagagc gaaacaaagg tccaccagga gacagcagtg gatgagtgcc caccctgtgt
     1501 ccatggtgcc cgggagagca atgtcacaat tggtccctct ggcccccaga gagggaaagg
     1561 tgagcagggc ctgcctggtc catcaggacc caagggagag aagggagccc ggggcaatga
     1621 ctgtgttcga atctccccgg atgccccgct tcagtgtgca gaaggcccaa agggagagaa
     1681 gggggagtcg ggagccttgg gaccctcagg actccctggc tccacaggcc agaagggcca
     1741 gaaaggcgac aagggagacg gaggcatcaa gggcttgcca ggaaagccag gccgagatgg
     1801 ccggccagga gagatctgtg tcatggggcc caaagggcag aagggagacc ctggctttgt
     1861 tgggcctgag gggctggcgg gagagcctgg gccccctggc ctccctgggc ccgctgggat
     1921 aggacttcct gggaccccgg gggacccagg tggccctcca ggccccaagg gagacaaggg
     1981 cagctctgga gtgccgggaa aggaaggtcc tggtgggaaa cctgggaagc caggggttcc
     2041 agggctgaag ggagagaagg gtgacccctg cgaagtgtgc ccagcgctgc ctgaagggtt
     2101 ccagaacttt gtggggctcc ctggaaagcc agggcccaag ggagaaccgg gtgttcctgc
     2161 accagccagg cagggcctgg gagctggtgg acaaaagggt gatcggggtg accctggcat
     2221 ccaaggcctc aaaggagaaa agggggagtc ctgcttgtcc tgcagctcag ccatagcagc
     2281 ccaacatctt gggccctcta tagggcccaa aggagatgtg ggccctcctg gcctcggttt
     2341 gcctggcctt ccggggaaag ttggggctcc agggccaaca gggctgaaag gagagaaggg
     2401 taatttcggg gaggcagggc cagccggcgg tctggggcct ccagggccag tgggacccac
     2461 aggcatcaag ggggagaagg gggagccttg tgagtcatgc agggccctgt ccaagcacca
     2521 ggatggggac agccacgtgg tggccttgcc tgggcctccc ggagagaagg gggagcctgg
     2581 gcatccaggc tttggcctgc caggaaaaca gggcaaagct ggagagcatg gattgaaggg
     2641 acagaagggc gatgctggga atcccggaga tcctggaaca ccgggcacca tggggcggcc
     2701 gggactgtcg ggagagcctg gggttcgggg cccttcaggg ccaaaaggag aaaagggtga
     2761 tggctgcact gcctgcccca gcctgcaggg ggcgttgacc aacagggcag gaccgcctgg
     2821 gaagccaggc ctgaagggag atccggggcc tgaaggcgtg ggcaggcctg gtaaaccggg
     2881 ccagcctggt ctaccaggag ttcaaggacc cccaggactg aagggcatac agggagagcc
     2941 agggcctcca ggagtgggag tccaggggcc ccagggggag cctggagccc agggtttgcc
     3001 tggcattcag gggcttctgg gacctcgggg gccacctggc cctgctggag agaagggtgc
     3061 caagggatct ccaggggtga aaggagccac tgggcctgtg ggacctgctg gtgccagtgt
     3121 ctctgggcct ccggggcctg atgggcagca aggacagact ggacttccag gagccagagg
     3181 gatgctgggt gaaaagggag ctcagggaga aaagggtgag ccaggggagt gctcctgccc
     3241 ctcccgaggg gaccccatct tctctggcat gccgggtgct ccgggacttt ggatgggcag
     3301 ctcctggcag ccgggcccgc agggtcctcc gggtattccc ggaccaccag gcccccctgg
     3361 aatgcctggg cttcaggacc tacctcatgg gacttttgga gtgcctggga acaacggttt
     3421 gccaggacag cctgggctga ctgcagagct gggatccttg cccattgaac agcatgtcct
     3481 taagagcatc tgcggggact gtgtccagag gcagacggcc cacccggcgg ccctcctgga
     3541 aagtggagag aagggagacc agggcatccc cggcgtgcca ggccttgaca gctgcgcccg
     3601 gtgcttcaca gagcgggagc ggccgagggc tgaggaggcc cggggagata acggcgaggg
     3661 agatgcgggc tgtgcaggga gccccggcct gcccggtgct ccaggactgc ccggccagag
     3721 aggagaagag ggtccgcccg gcatgagggg ctccccgggt cctccaggcc ctattggccc
     3781 cccaggtttt cctggtgctg ttggctcccc cggattgcct ggtcttcaag gagagcgagg
     3841 cctcaggggc ctgacaggag agaaggggga accgggtcct ccagggcaac ctggctaccc
     3901 aggtgccatg ggccccccgg gactgcctgg catcaagggg gagcgcggct acgcgggttc
     3961 cccgggagag aagggagaat cgggcccacc aggatctgaa ggcctcccag gtcccccagg
     4021 cccagcaggt ccccgaggag agcgaggacc ccaagggaac ttgggtgaga aaggtgacca
     4081 gggatttcaa ggccagccgg gctttccagg cccactgggt ccccctggat tcccaggcaa
     4141 agctggagca cctggcccac ctggccccca agcggagaag ggcagtgaag ggattcgagg
     4201 tccatcaggc ctgcctggtc cccctggacc accaggatct cccgggattc agggccctgc
     4261 cggtctggat ggtctggatg ggaaggacgg caagcctggc gtgagggggg accctggtcc
     4321 tgctggcccc cccggactca tgggaccccc gggcttcaag ggaaaaccgg gccatcccgg
     4381 cctcccagga ctgaagggtg actgtggaaa gcctggtccc ccgggcagca gtggccgccc
     4441 cggagcagag ggtgagcctg gtgccatggg accccaggga agacccggcc cccctggcca
     4501 cgttgggcct ccggggtctc caggccagcc aggcccagct ggaatctctg cagtgggccc
     4561 aaaaggagac cgaggatcca ctggagaaag gggcctttca ggtcttccgg gccagcctgg
     4621 tccccctgga caccctggcc ccccgggtga acctggtgca gatggtgaag ctggcaaaga
     4681 gggaccccct ggaaaacagg gaatctacgg accccctggt ccaaagggtg acccgggacc
     4741 ttcagggcag aagggccagg caggggagaa gggaagagct ggcatgcctg gcgggcctgg
     4801 caagagtggc tccatgggac cttctgggcc gccgggtcct gcaggagaga gaggccaccc
     4861 tggatctcca ggacctgcgg ggagccctgg tctgcccggg gtgcctggct ccatgggaga
     4921 catggtgaat tatgatgaaa tcaagaggtt catcagacaa gagatcatta aaatgtttga
     4981 cgagaggatg gcttactaca cctccaggat gcagtttccc atggagatgg cagcagctcc
     5041 aggacgacca gggcccccag ggaaggacgg tcccccgggc cggccaggtg ccccgggatc
     5101 acctgggctc cctggtcaga ttggcagaga aggtcggcag ggcttgcccg ggttgagagg
     5161 attgcctggt accaaaggtg aaaagggaga cactggtgtt ggcattgcag gagaagttgg
     5221 tctccccggc cccccaggtc ctcaaggtcc tccaggatat ggcaagatgg gtgcaactgg
     5281 gccgatgggc cagcaaggca ttcctggcat ccctggcgcc ccaggctcca tgggcccacc
     5341 gggcaaggcc ggccactgta acccctctga ctgctttggg gccatgccaa tggagcagga
     5401 gtacccaccc atgaaaaaca tgaaggggcc ttttggctga aatcaccatt tccatcagat
     5461 gaaggactcc attgggaaca aatggctaaa acttatagga ttctggatgg gttgtgaatg
     5521 ttttgggttt ttaagtgcta ttaatatttt tttatcaata aacaaagaaa caaaa
//
LOCUS       XM_032647709            5570 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X2, mRNA.
ACCESSION   XM_032647709
VERSION     XM_032647709.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5570
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5570
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             540..5435
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X2"
                     /protein_id="XP_032503600.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARGLGAGGQKGDRGDPGIQGLKGEK
                     GESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGEA
                     GPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHPG
                     FGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGDG
                     CTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGE
                     PGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPAG
                     ASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGAPG
                     LWMGSSWQPGPQGPPGIPGPPGPPGMPGLQDLPHGTFGVPGNNGLPGQPGLTAELGSL
                     PIEQHVLKSICGDCVQRQTAHPAALLESGEKGDQGIPGVPGLDSCARCFTERERPRAE
                     EARGDNGEGDAGCAGSPGLPGAPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGS
                     PGLPGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGES
                     GPPGSEGLPGPPGPAGPRGERGPQGNLGEKGDQGFQGQPGFPGPLGPPGFPGKAGAPG
                     PPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAGP
                     PGLMGPPGFKGKPGHPGLPGLKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHV
                     GPPGSPGQPGPAGISAVGPKGDRGSTGERGLSGLPGQPGPPGHPGPPGEPGADGEAGK
                     EGPPGKQGIYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPSGPPGPAGER
                     GHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPME
                     MAAAPGRPGPPGKDGPPGRPGAPGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDTGV
                     GIAGEVGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGAPGSMGPPGKAGHCNPSDC
                     FGAMPMEQEYPPMKNMKGPFG"
     misc_feature    687..1232
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1530..>2240
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2085..>2945
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2802..>3224
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3639..>4436
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4140..>4871
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4551..>5360
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 ccggactccc cgcccacccg cctaccgcca gagccccttg cagggcaact ccgggcacgc
       61 agggtcccgc cttgctcgct cgcttacctg gcgcggggca agtgggaggg atgggcttgg
      121 gagcgccgcc aggccaggag tgggccttgc gtcctgccgc ctctgccacc gctggagacc
      181 cctcccggtc ctccctccct cctcctgcct ggcgggcggg tccagctgtg ttccattagc
      241 ggccctggca agtccccagc cccctggagc ctccccctct tcccccaccc ggagtggccg
      301 gcagtccccg gcaggcgagc gggcatgcga gcggggcagc attcagcccc agaagctcag
      361 gacaggggaa actggggacc cgaggccggc cagaagtaat cgaggacctt ccagcgggtc
      421 tgaagaaccc aggccctgct tcccgcggtt cgctgcgttg ggctgcctgg attacacagt
      481 gaggtggtgg ggatccccag ccacggtgct gtggctgcgg ccgacttctt tggaccagga
      541 tgtgggcatc ttgggctcct ggcttgtggc tgctcagtct ctgtgttatc tgcagccatg
      601 aggcagatac aggggagcgg tgcccacctt cacagcaaga aggactcaag ttggaacaca
      661 gaagcgactt atcgaccaac gtgactggct tcggtctcat ccgccgactc aacctcatga
      721 agatatctgc cattaagaag atccgaaacc ccaagggacc tctcatcctg cgactgggag
      781 cggtctcagt cacccagccc gtgcgacgtg tattccctcg gggcctcccc agtgagtttg
      841 ccctggtgct gacactactg ctgaagaaac acacccacca gaatacgtgg tatttgtttc
      901 aagtgaccga tggaaatggg tacccgcaga tttccctgga agtcaacagc caagagcgga
      961 gcctggagtt ccgggcccgg ggccaagatg gcgactttgt gtcctgcatc ttctcagtgc
     1021 cccagctctt tgacctgcgt tggcacaagc tgatgctgag cgtggctgaa cgcgtagcct
     1081 ctgtgcacgt ggactgcaca tcagtctcct cccggcctct ggggccctgg cgacccatgc
     1141 agcctgtggg ccatgttttt ctgggcttag atgctgagca gggcaaacct gtcttgtttg
     1201 accttcagca ggcacacatc tactgtgacc cggatcttgt gctggaggag ggctgctgtg
     1261 agattttgcc gggagggtgt cccccagaga cctccaaggc ccgccgggac acgcagagca
     1321 atgagctcat cgagatcaat ccacagactg agggcaaggt ctacacccgc tgcttctgcc
     1381 tggaggagcc gcaaaacagc aaggtgggcg cccagctgac gggaagaatc agccaggagg
     1441 cagagagcga aacaaaggtc caccaggaga cagcagtgga tgagtgccca ccctgtgtcc
     1501 atggtgcccg ggagagcaat gtcacaattg gtccctctgg cccccagaga gggaaaggtg
     1561 agcagggcct gcctggtcca tcaggaccca agggagagaa gggagcccgg ggcaatgact
     1621 gtgttcgaat ctccccggat gccccgcttc agtgtgcaga aggcccaaag ggagagaagg
     1681 gggagtcggg agccttggga ccctcaggac tccctggctc cacaggccag aagggccaga
     1741 aaggcgacaa gggagacgga ggcatcaagg gcttgccagg aaagccaggc cgagatggcc
     1801 ggccaggaga gatctgtgtc atggggccca aagggcagaa gggagaccct ggctttgttg
     1861 ggcctgaggg gctggcggga gagcctgggc cccctggcct ccctgggccc gctgggatag
     1921 gacttcctgg gaccccgggg gacccaggtg gccctccagg ccccaaggga gacaagggca
     1981 gctctggagt gccgggaaag gaaggtcctg gtgggaaacc tgggaagcca ggggttccag
     2041 ggctgaaggg agagaagggt gacccctgcg aagtgtgccc agcgctgcct gaagggttcc
     2101 agaactttgt ggggctccct ggaaagccag ggcccaaggg agaaccgggt gttcctgcac
     2161 cagccagggg cctgggagct ggtggacaaa agggtgatcg gggtgaccct ggcatccaag
     2221 gcctcaaagg agaaaagggg gagtcctgct tgtcctgcag ctcagccata gcagcccaac
     2281 atcttgggcc ctctataggg cccaaaggag atgtgggccc tcctggcctc ggtttgcctg
     2341 gccttccggg gaaagttggg gctccagggc caacagggct gaaaggagag aagggtaatt
     2401 tcggggaggc agggccagcc ggcggtctgg ggcctccagg gccagtggga cccacaggca
     2461 tcaaggggga gaagggggag ccttgtgagt catgcagggc cctgtccaag caccaggatg
     2521 gggacagcca cgtggtggcc ttgcctgggc ctcccggaga gaagggggag cctgggcatc
     2581 caggctttgg cctgccagga aaacagggca aagctggaga gcatggattg aagggacaga
     2641 agggcgatgc tgggaatccc ggagatcctg gaacaccggg caccatgggg cggccgggac
     2701 tgtcgggaga gcctggggtt cggggccctt cagggccaaa aggagaaaag ggtgatggct
     2761 gcactgcctg ccccagcctg cagggggcgt tgaccaacag ggcaggaccg cctgggaagc
     2821 caggcctgaa gggagatccg gggcctgaag gcgtgggcag gcctggtaaa ccgggccagc
     2881 ctggtctacc aggagttcaa ggacccccag gactgaaggg catacaggga gagccagggc
     2941 ctccaggagt gggagtccag gggccccagg gggagcctgg agcccagggt ttgcctggca
     3001 ttcaggggct tctgggacct cgggggccac ctggccctgc tggagagaag ggtgccaagg
     3061 gatctccagg ggtgaaagga gccactgggc ctgtgggacc tgctggtgcc agtgtctctg
     3121 ggcctccggg gcctgatggg cagcaaggac agactggact tccaggagcc agagggatgc
     3181 tgggtgaaaa gggagctcag ggagaaaagg gtgagccagg ggagtgctcc tgcccctccc
     3241 gaggggaccc catcttctct ggcatgccgg gtgctccggg actttggatg ggcagctcct
     3301 ggcagccggg cccgcagggt cctccgggta ttcccggacc accaggcccc cctggaatgc
     3361 ctgggcttca ggacctacct catgggactt ttggagtgcc tgggaacaac ggtttgccag
     3421 gacagcctgg gctgactgca gagctgggat ccttgcccat tgaacagcat gtccttaaga
     3481 gcatctgcgg ggactgtgtc cagaggcaga cggcccaccc ggcggccctc ctggaaagtg
     3541 gagagaaggg agaccagggc atccccggcg tgccaggcct tgacagctgc gcccggtgct
     3601 tcacagagcg ggagcggccg agggctgagg aggcccgggg agataacggc gagggagatg
     3661 cgggctgtgc agggagcccc ggcctgcccg gtgctccagg actgcccggc cagagaggag
     3721 aagagggtcc gcccggcatg aggggctccc cgggtcctcc aggccctatt ggccccccag
     3781 gttttcctgg tgctgttggc tcccccggat tgcctggtct tcaaggagag cgaggcctca
     3841 ggggcctgac aggagagaag ggggaaccgg gtcctccagg gcaacctggc tacccaggtg
     3901 ccatgggccc cccgggactg cctggcatca agggggagcg cggctacgcg ggttccccgg
     3961 gagagaaggg agaatcgggc ccaccaggat ctgaaggcct cccaggtccc ccaggcccag
     4021 caggtccccg aggagagcga ggaccccaag ggaacttggg tgagaaaggt gaccagggat
     4081 ttcaaggcca gccgggcttt ccaggcccac tgggtccccc tggattccca ggcaaagctg
     4141 gagcacctgg cccacctggc ccccaagcgg agaagggcag tgaagggatt cgaggtccat
     4201 caggcctgcc tggtccccct ggaccaccag gatctcccgg gattcagggc cctgccggtc
     4261 tggatggtct ggatgggaag gacggcaagc ctggcgtgag gggggaccct ggtcctgctg
     4321 gcccccccgg actcatggga cccccgggct tcaagggaaa accgggccat cccggcctcc
     4381 caggactgaa gggtgactgt ggaaagcctg gtcccccggg cagcagtggc cgccccggag
     4441 cagagggtga gcctggtgcc atgggacccc agggaagacc cggcccccct ggccacgttg
     4501 ggcctccggg gtctccaggc cagccaggcc cagctggaat ctctgcagtg ggcccaaaag
     4561 gagaccgagg atccactgga gaaaggggcc tttcaggtct tccgggccag cctggtcccc
     4621 ctggacaccc tggccccccg ggtgaacctg gtgcagatgg tgaagctggc aaagagggac
     4681 cccctggaaa acagggaatc tacggacccc ctggtccaaa gggtgacccg ggaccttcag
     4741 ggcagaaggg ccaggcaggg gagaagggaa gagctggcat gcctggcggg cctggcaaga
     4801 gtggctccat gggaccttct gggccgccgg gtcctgcagg agagagaggc caccctggat
     4861 ctccaggacc tgcggggagc cctggtctgc ccggggtgcc tggctccatg ggagacatgg
     4921 tgaattatga tgaaatcaag aggttcatca gacaagagat cattaaaatg tttgacgaga
     4981 ggatggctta ctacacctcc aggatgcagt ttcccatgga gatggcagca gctccaggac
     5041 gaccagggcc cccagggaag gacggtcccc cgggccggcc aggtgccccg ggatcacctg
     5101 ggctccctgg tcagattggc agagaaggtc ggcagggctt gcccgggttg agaggattgc
     5161 ctggtaccaa aggtgaaaag ggagacactg gtgttggcat tgcaggagaa gttggtctcc
     5221 ccggcccccc aggtcctcaa ggtcctccag gatatggcaa gatgggtgca actgggccga
     5281 tgggccagca aggcattcct ggcatccctg gcgccccagg ctccatgggc ccaccgggca
     5341 aggccggcca ctgtaacccc tctgactgct ttggggccat gccaatggag caggagtacc
     5401 cacccatgaa aaacatgaag gggccttttg gctgaaatca ccatttccat cagatgaagg
     5461 actccattgg gaacaaatgg ctaaaactta taggattctg gatgggttgt gaatgttttg
     5521 ggtttttaag tgctattaat atttttttat caataaacaa agaaacaaaa
//
LOCUS       XM_032647718            5551 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X3, mRNA.
ACCESSION   XM_032647718
VERSION     XM_032647718.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5551
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5551
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             539..5416
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X3"
                     /protein_id="XP_032503609.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARQGLGAGGQKGDRGDPGIQGLKGE
                     KGESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGE
                     AGPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHP
                     GFGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGD
                     GCTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQG
                     EPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPA
                     GASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGAP
                     GLWMGSSWQPGPQGPPGIPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHV
                     LKSICGDCVQRQTAHPAALLESGEKGDQGIPGVPGLDSCARCFTERERPRAEEARGDN
                     GEGDAGCAGSPGLPGAPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGL
                     QGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSE
                     GLPGPPGPAGPRGERGPQGNLGEKGDQGFQGQPGFPGPLGPPGFPGKAGAPGPPGPQA
                     EKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAGPPGLMGP
                     PGFKGKPGHPGLPGLKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHVGPPGSP
                     GQPGPAGISAVGPKGDRGSTGERGLSGLPGQPGPPGHPGPPGEPGADGEAGKEGPPGK
                     QGIYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPSGPPGPAGERGHPGSP
                     GPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPG
                     RPGPPGKDGPPGRPGAPGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDTGVGIAGEV
                     GLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGAPGSMGPPGKAGHCNPSDCFGAMPM
                     EQEYPPMKNMKGPFG"
     misc_feature    686..1231
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1529..>2242
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2084..>2947
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2804..>3226
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3620..>4417
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4121..>4852
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4532..>5341
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 cggactcccc gcccacccgc ctaccgccag agccccttgc agggcaactc cgggcacgca
       61 gggtcccgcc ttgctcgctc gcttacctgg cgcggggcaa gtgggaggga tgggcttggg
      121 agcgccgcca ggccaggagt gggccttgcg tcctgccgcc tctgccaccg ctggagaccc
      181 ctcccggtcc tccctccctc ctcctgcctg gcgggcgggt ccagctgtgt tccattagcg
      241 gccctggcaa gtccccagcc ccctggagcc tccccctctt cccccacccg gagtggccgg
      301 cagtccccgg caggcgagcg ggcatgcgag cggggcagca ttcagcccca gaagctcagg
      361 acaggggaaa ctggggaccc gaggccggcc agaagtaatc gaggaccttc cagcgggtct
      421 gaagaaccca ggccctgctt cccgcggttc gctgcgttgg gctgcctgga ttacacagtg
      481 aggtggtggg gatccccagc cacggtgctg tggctgcggc cgacttcttt ggaccaggat
      541 gtgggcatct tgggctcctg gcttgtggct gctcagtctc tgtgttatct gcagccatga
      601 ggcagataca ggggagcggt gcccaccttc acagcaagaa ggactcaagt tggaacacag
      661 aagcgactta tcgaccaacg tgactggctt cggtctcatc cgccgactca acctcatgaa
      721 gatatctgcc attaagaaga tccgaaaccc caagggacct ctcatcctgc gactgggagc
      781 ggtctcagtc acccagcccg tgcgacgtgt attccctcgg ggcctcccca gtgagtttgc
      841 cctggtgctg acactactgc tgaagaaaca cacccaccag aatacgtggt atttgtttca
      901 agtgaccgat ggaaatgggt acccgcagat ttccctggaa gtcaacagcc aagagcggag
      961 cctggagttc cgggcccggg gccaagatgg cgactttgtg tcctgcatct tctcagtgcc
     1021 ccagctcttt gacctgcgtt ggcacaagct gatgctgagc gtggctgaac gcgtagcctc
     1081 tgtgcacgtg gactgcacat cagtctcctc ccggcctctg gggccctggc gacccatgca
     1141 gcctgtgggc catgtttttc tgggcttaga tgctgagcag ggcaaacctg tcttgtttga
     1201 ccttcagcag gcacacatct actgtgaccc ggatcttgtg ctggaggagg gctgctgtga
     1261 gattttgccg ggagggtgtc ccccagagac ctccaaggcc cgccgggaca cgcagagcaa
     1321 tgagctcatc gagatcaatc cacagactga gggcaaggtc tacacccgct gcttctgcct
     1381 ggaggagccg caaaacagca aggtgggcgc ccagctgacg ggaagaatca gccaggaggc
     1441 agagagcgaa acaaaggtcc accaggagac agcagtggat gagtgcccac cctgtgtcca
     1501 tggtgcccgg gagagcaatg tcacaattgg tccctctggc ccccagagag ggaaaggtga
     1561 gcagggcctg cctggtccat caggacccaa gggagagaag ggagcccggg gcaatgactg
     1621 tgttcgaatc tccccggatg ccccgcttca gtgtgcagaa ggcccaaagg gagagaaggg
     1681 ggagtcggga gccttgggac cctcaggact ccctggctcc acaggccaga agggccagaa
     1741 aggcgacaag ggagacggag gcatcaaggg cttgccagga aagccaggcc gagatggccg
     1801 gccaggagag atctgtgtca tggggcccaa agggcagaag ggagaccctg gctttgttgg
     1861 gcctgagggg ctggcgggag agcctgggcc ccctggcctc cctgggcccg ctgggatagg
     1921 acttcctggg accccggggg acccaggtgg ccctccaggc cccaagggag acaagggcag
     1981 ctctggagtg ccgggaaagg aaggtcctgg tgggaaacct gggaagccag gggttccagg
     2041 gctgaaggga gagaagggtg acccctgcga agtgtgccca gcgctgcctg aagggttcca
     2101 gaactttgtg gggctccctg gaaagccagg gcccaaggga gaaccgggtg ttcctgcacc
     2161 agccaggcag ggcctgggag ctggtggaca aaagggtgat cggggtgacc ctggcatcca
     2221 aggcctcaaa ggagaaaagg gggagtcctg cttgtcctgc agctcagcca tagcagccca
     2281 acatcttggg ccctctatag ggcccaaagg agatgtgggc cctcctggcc tcggtttgcc
     2341 tggccttccg gggaaagttg gggctccagg gccaacaggg ctgaaaggag agaagggtaa
     2401 tttcggggag gcagggccag ccggcggtct ggggcctcca gggccagtgg gacccacagg
     2461 catcaagggg gagaaggggg agccttgtga gtcatgcagg gccctgtcca agcaccagga
     2521 tggggacagc cacgtggtgg ccttgcctgg gcctcccgga gagaaggggg agcctgggca
     2581 tccaggcttt ggcctgccag gaaaacaggg caaagctgga gagcatggat tgaagggaca
     2641 gaagggcgat gctgggaatc ccggagatcc tggaacaccg ggcaccatgg ggcggccggg
     2701 actgtcggga gagcctgggg ttcggggccc ttcagggcca aaaggagaaa agggtgatgg
     2761 ctgcactgcc tgccccagcc tgcagggggc gttgaccaac agggcaggac cgcctgggaa
     2821 gccaggcctg aagggagatc cggggcctga aggcgtgggc aggcctggta aaccgggcca
     2881 gcctggtcta ccaggagttc aaggaccccc aggactgaag ggcatacagg gagagccagg
     2941 gcctccagga gtgggagtcc aggggcccca gggggagcct ggagcccagg gtttgcctgg
     3001 cattcagggg cttctgggac ctcgggggcc acctggccct gctggagaga agggtgccaa
     3061 gggatctcca ggggtgaaag gagccactgg gcctgtggga cctgctggtg ccagtgtctc
     3121 tgggcctccg gggcctgatg ggcagcaagg acagactgga cttccaggag ccagagggat
     3181 gctgggtgaa aagggagctc agggagaaaa gggtgagcca ggggagtgct cctgcccctc
     3241 ccgaggggac cccatcttct ctggcatgcc gggtgctccg ggactttgga tgggcagctc
     3301 ctggcagccg ggcccgcagg gtcctccggg tattcccgga ccaccaggcc cccctggaat
     3361 gcctgggctt cagggagtgc ctgggaacaa cggtttgcca ggacagcctg ggctgactgc
     3421 agagctggga tccttgccca ttgaacagca tgtccttaag agcatctgcg gggactgtgt
     3481 ccagaggcag acggcccacc cggcggccct cctggaaagt ggagagaagg gagaccaggg
     3541 catccccggc gtgccaggcc ttgacagctg cgcccggtgc ttcacagagc gggagcggcc
     3601 gagggctgag gaggcccggg gagataacgg cgagggagat gcgggctgtg cagggagccc
     3661 cggcctgccc ggtgctccag gactgcccgg ccagagagga gaagagggtc cgcccggcat
     3721 gaggggctcc ccgggtcctc caggccctat tggcccccca ggttttcctg gtgctgttgg
     3781 ctcccccgga ttgcctggtc ttcaaggaga gcgaggcctc aggggcctga caggagagaa
     3841 gggggaaccg ggtcctccag ggcaacctgg ctacccaggt gccatgggcc ccccgggact
     3901 gcctggcatc aagggggagc gcggctacgc gggttccccg ggagagaagg gagaatcggg
     3961 cccaccagga tctgaaggcc tcccaggtcc cccaggccca gcaggtcccc gaggagagcg
     4021 aggaccccaa gggaacttgg gtgagaaagg tgaccaggga tttcaaggcc agccgggctt
     4081 tccaggccca ctgggtcccc ctggattccc aggcaaagct ggagcacctg gcccacctgg
     4141 cccccaagcg gagaagggca gtgaagggat tcgaggtcca tcaggcctgc ctggtccccc
     4201 tggaccacca ggatctcccg ggattcaggg ccctgccggt ctggatggtc tggatgggaa
     4261 ggacggcaag cctggcgtga ggggggaccc tggtcctgct ggcccccccg gactcatggg
     4321 acccccgggc ttcaagggaa aaccgggcca tcccggcctc ccaggactga agggtgactg
     4381 tggaaagcct ggtcccccgg gcagcagtgg ccgccccgga gcagagggtg agcctggtgc
     4441 catgggaccc cagggaagac ccggcccccc tggccacgtt gggcctccgg ggtctccagg
     4501 ccagccaggc ccagctggaa tctctgcagt gggcccaaaa ggagaccgag gatccactgg
     4561 agaaaggggc ctttcaggtc ttccgggcca gcctggtccc cctggacacc ctggcccccc
     4621 gggtgaacct ggtgcagatg gtgaagctgg caaagaggga ccccctggaa aacagggaat
     4681 ctacggaccc cctggtccaa agggtgaccc gggaccttca gggcagaagg gccaggcagg
     4741 ggagaaggga agagctggca tgcctggcgg gcctggcaag agtggctcca tgggaccttc
     4801 tgggccgccg ggtcctgcag gagagagagg ccaccctgga tctccaggac ctgcggggag
     4861 ccctggtctg cccggggtgc ctggctccat gggagacatg gtgaattatg atgaaatcaa
     4921 gaggttcatc agacaagaga tcattaaaat gtttgacgag aggatggctt actacacctc
     4981 caggatgcag tttcccatgg agatggcagc agctccagga cgaccagggc ccccagggaa
     5041 ggacggtccc ccgggccggc caggtgcccc gggatcacct gggctccctg gtcagattgg
     5101 cagagaaggt cggcagggct tgcccgggtt gagaggattg cctggtacca aaggtgaaaa
     5161 gggagacact ggtgttggca ttgcaggaga agttggtctc cccggccccc caggtcctca
     5221 aggtcctcca ggatatggca agatgggtgc aactgggccg atgggccagc aaggcattcc
     5281 tggcatccct ggcgccccag gctccatggg cccaccgggc aaggccggcc actgtaaccc
     5341 ctctgactgc tttggggcca tgccaatgga gcaggagtac ccacccatga aaaacatgaa
     5401 ggggcctttt ggctgaaatc accatttcca tcagatgaag gactccattg ggaacaaatg
     5461 gctaaaactt ataggattct ggatgggttg tgaatgtttt gggtttttaa gtgctattaa
     5521 tattttttta tcaataaaca aagaaacaaa a
//
LOCUS       XM_032647727            5536 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X4, mRNA.
ACCESSION   XM_032647727
VERSION     XM_032647727.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5536
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5536
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             545..5401
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X4"
                     /protein_id="XP_032503618.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARQGLGAGGQKGDRGDPGIQGLKGE
                     KGESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGE
                     AGPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHP
                     GFGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGD
                     GCTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQG
                     EPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPA
                     GASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGAP
                     GLWMGSSWQPGPQGPPGIPGPPGPPGMPGLQDLPHGTFGVPGNNGLPGQPGLTAELGS
                     LPIEQHVLKSICGDCVQRQTAHPAALLESGEKGDQGIPGVPGLDSCARGDNGEGDAGC
                     AGSPGLPGAPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLR
                     GLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPG
                     PAGPRGERGPQGNLGEKGDQGFQGQPGFPGPLGPPGFPGKAGAPGPPGPQAEKGSEGI
                     RGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAGPPGLMGPPGFKGKP
                     GHPGLPGLKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHVGPPGSPGQPGPAG
                     ISAVGPKGDRGSTGERGLSGLPGQPGPPGHPGPPGEPGADGEAGKEGPPGKQGIYGPP
                     GPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPSGPPGPAGERGHPGSPGPAGSPG
                     LPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGK
                     DGPPGRPGAPGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDTGVGIAGEVGLPGPPG
                     PQGPPGYGKMGATGPMGQQGIPGIPGAPGSMGPPGKAGHCNPSDCFGAMPMEQEYPPM
                     KNMKGPFG"
     misc_feature    692..1237
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1535..>2248
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2090..>2953
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2810..>3232
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3605..>4402
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4106..>4837
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4517..>5326
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 aagggccgga ctccccgccc acccgcctac cgccagagcc ccttgcaggg caactccggg
       61 cacgcagggt cccgccttgc tcgctcgctt acctggcgcg gggcaagtgg gagggatggg
      121 cttgggagcg ccgccaggcc aggagtgggc cttgcgtcct gccgcctctg ccaccgctgg
      181 agacccctcc cggtcctccc tccctcctcc tgcctggcgg gcgggtccag ctgtgttcca
      241 ttagcggccc tggcaagtcc ccagccccct ggagcctccc cctcttcccc cacccggagt
      301 ggccggcagt ccccggcagg cgagcgggca tgcgagcggg gcagcattca gccccagaag
      361 ctcaggacag gggaaactgg ggacccgagg ccggccagaa gtaatcgagg accttccagc
      421 gggtctgaag aacccaggcc ctgcttcccg cggttcgctg cgttgggctg cctggattac
      481 acagtgaggt ggtggggatc cccagccacg gtgctgtggc tgcggccgac ttctttggac
      541 caggatgtgg gcatcttggg ctcctggctt gtggctgctc agtctctgtg ttatctgcag
      601 ccatgaggca gatacagggg agcggtgccc accttcacag caagaaggac tcaagttgga
      661 acacagaagc gacttatcga ccaacgtgac tggcttcggt ctcatccgcc gactcaacct
      721 catgaagata tctgccatta agaagatccg aaaccccaag ggacctctca tcctgcgact
      781 gggagcggtc tcagtcaccc agcccgtgcg acgtgtattc cctcggggcc tccccagtga
      841 gtttgccctg gtgctgacac tactgctgaa gaaacacacc caccagaata cgtggtattt
      901 gtttcaagtg accgatggaa atgggtaccc gcagatttcc ctggaagtca acagccaaga
      961 gcggagcctg gagttccggg cccggggcca agatggcgac tttgtgtcct gcatcttctc
     1021 agtgccccag ctctttgacc tgcgttggca caagctgatg ctgagcgtgg ctgaacgcgt
     1081 agcctctgtg cacgtggact gcacatcagt ctcctcccgg cctctggggc cctggcgacc
     1141 catgcagcct gtgggccatg tttttctggg cttagatgct gagcagggca aacctgtctt
     1201 gtttgacctt cagcaggcac acatctactg tgacccggat cttgtgctgg aggagggctg
     1261 ctgtgagatt ttgccgggag ggtgtccccc agagacctcc aaggcccgcc gggacacgca
     1321 gagcaatgag ctcatcgaga tcaatccaca gactgagggc aaggtctaca cccgctgctt
     1381 ctgcctggag gagccgcaaa acagcaaggt gggcgcccag ctgacgggaa gaatcagcca
     1441 ggaggcagag agcgaaacaa aggtccacca ggagacagca gtggatgagt gcccaccctg
     1501 tgtccatggt gcccgggaga gcaatgtcac aattggtccc tctggccccc agagagggaa
     1561 aggtgagcag ggcctgcctg gtccatcagg acccaaggga gagaagggag cccggggcaa
     1621 tgactgtgtt cgaatctccc cggatgcccc gcttcagtgt gcagaaggcc caaagggaga
     1681 gaagggggag tcgggagcct tgggaccctc aggactccct ggctccacag gccagaaggg
     1741 ccagaaaggc gacaagggag acggaggcat caagggcttg ccaggaaagc caggccgaga
     1801 tggccggcca ggagagatct gtgtcatggg gcccaaaggg cagaagggag accctggctt
     1861 tgttgggcct gaggggctgg cgggagagcc tgggccccct ggcctccctg ggcccgctgg
     1921 gataggactt cctgggaccc cgggggaccc aggtggccct ccaggcccca agggagacaa
     1981 gggcagctct ggagtgccgg gaaaggaagg tcctggtggg aaacctggga agccaggggt
     2041 tccagggctg aagggagaga agggtgaccc ctgcgaagtg tgcccagcgc tgcctgaagg
     2101 gttccagaac tttgtggggc tccctggaaa gccagggccc aagggagaac cgggtgttcc
     2161 tgcaccagcc aggcagggcc tgggagctgg tggacaaaag ggtgatcggg gtgaccctgg
     2221 catccaaggc ctcaaaggag aaaaggggga gtcctgcttg tcctgcagct cagccatagc
     2281 agcccaacat cttgggccct ctatagggcc caaaggagat gtgggccctc ctggcctcgg
     2341 tttgcctggc cttccgggga aagttggggc tccagggcca acagggctga aaggagagaa
     2401 gggtaatttc ggggaggcag ggccagccgg cggtctgggg cctccagggc cagtgggacc
     2461 cacaggcatc aagggggaga agggggagcc ttgtgagtca tgcagggccc tgtccaagca
     2521 ccaggatggg gacagccacg tggtggcctt gcctgggcct cccggagaga agggggagcc
     2581 tgggcatcca ggctttggcc tgccaggaaa acagggcaaa gctggagagc atggattgaa
     2641 gggacagaag ggcgatgctg ggaatcccgg agatcctgga acaccgggca ccatggggcg
     2701 gccgggactg tcgggagagc ctggggttcg gggcccttca gggccaaaag gagaaaaggg
     2761 tgatggctgc actgcctgcc ccagcctgca gggggcgttg accaacaggg caggaccgcc
     2821 tgggaagcca ggcctgaagg gagatccggg gcctgaaggc gtgggcaggc ctggtaaacc
     2881 gggccagcct ggtctaccag gagttcaagg acccccagga ctgaagggca tacagggaga
     2941 gccagggcct ccaggagtgg gagtccaggg gccccagggg gagcctggag cccagggttt
     3001 gcctggcatt caggggcttc tgggacctcg ggggccacct ggccctgctg gagagaaggg
     3061 tgccaaggga tctccagggg tgaaaggagc cactgggcct gtgggacctg ctggtgccag
     3121 tgtctctggg cctccggggc ctgatgggca gcaaggacag actggacttc caggagccag
     3181 agggatgctg ggtgaaaagg gagctcaggg agaaaagggt gagccagggg agtgctcctg
     3241 cccctcccga ggggacccca tcttctctgg catgccgggt gctccgggac tttggatggg
     3301 cagctcctgg cagccgggcc cgcagggtcc tccgggtatt cccggaccac caggcccccc
     3361 tggaatgcct gggcttcagg acctacctca tgggactttt ggagtgcctg ggaacaacgg
     3421 tttgccagga cagcctgggc tgactgcaga gctgggatcc ttgcccattg aacagcatgt
     3481 ccttaagagc atctgcgggg actgtgtcca gaggcagacg gcccacccgg cggccctcct
     3541 ggaaagtgga gagaagggag accagggcat ccccggcgtg ccaggccttg acagctgcgc
     3601 ccggggagat aacggcgagg gagatgcggg ctgtgcaggg agccccggcc tgcccggtgc
     3661 tccaggactg cccggccaga gaggagaaga gggtccgccc ggcatgaggg gctccccggg
     3721 tcctccaggc cctattggcc ccccaggttt tcctggtgct gttggctccc ccggattgcc
     3781 tggtcttcaa ggagagcgag gcctcagggg cctgacagga gagaaggggg aaccgggtcc
     3841 tccagggcaa cctggctacc caggtgccat gggccccccg ggactgcctg gcatcaaggg
     3901 ggagcgcggc tacgcgggtt ccccgggaga gaagggagaa tcgggcccac caggatctga
     3961 aggcctccca ggtcccccag gcccagcagg tccccgagga gagcgaggac cccaagggaa
     4021 cttgggtgag aaaggtgacc agggatttca aggccagccg ggctttccag gcccactggg
     4081 tccccctgga ttcccaggca aagctggagc acctggccca cctggccccc aagcggagaa
     4141 gggcagtgaa gggattcgag gtccatcagg cctgcctggt ccccctggac caccaggatc
     4201 tcccgggatt cagggccctg ccggtctgga tggtctggat gggaaggacg gcaagcctgg
     4261 cgtgaggggg gaccctggtc ctgctggccc ccccggactc atgggacccc cgggcttcaa
     4321 gggaaaaccg ggccatcccg gcctcccagg actgaagggt gactgtggaa agcctggtcc
     4381 cccgggcagc agtggccgcc ccggagcaga gggtgagcct ggtgccatgg gaccccaggg
     4441 aagacccggc ccccctggcc acgttgggcc tccggggtct ccaggccagc caggcccagc
     4501 tggaatctct gcagtgggcc caaaaggaga ccgaggatcc actggagaaa ggggcctttc
     4561 aggtcttccg ggccagcctg gtccccctgg acaccctggc cccccgggtg aacctggtgc
     4621 agatggtgaa gctggcaaag agggaccccc tggaaaacag ggaatctacg gaccccctgg
     4681 tccaaagggt gacccgggac cttcagggca gaagggccag gcaggggaga agggaagagc
     4741 tggcatgcct ggcgggcctg gcaagagtgg ctccatggga ccttctgggc cgccgggtcc
     4801 tgcaggagag agaggccacc ctggatctcc aggacctgcg gggagccctg gtctgcccgg
     4861 ggtgcctggc tccatgggag acatggtgaa ttatgatgaa atcaagaggt tcatcagaca
     4921 agagatcatt aaaatgtttg acgagaggat ggcttactac acctccagga tgcagtttcc
     4981 catggagatg gcagcagctc caggacgacc agggccccca gggaaggacg gtcccccggg
     5041 ccggccaggt gccccgggat cacctgggct ccctggtcag attggcagag aaggtcggca
     5101 gggcttgccc gggttgagag gattgcctgg taccaaaggt gaaaagggag acactggtgt
     5161 tggcattgca ggagaagttg gtctccccgg ccccccaggt cctcaaggtc ctccaggata
     5221 tggcaagatg ggtgcaactg ggccgatggg ccagcaaggc attcctggca tccctggcgc
     5281 cccaggctcc atgggcccac cgggcaaggc cggccactgt aacccctctg actgctttgg
     5341 ggccatgcca atggagcagg agtacccacc catgaaaaac atgaaggggc cttttggctg
     5401 aaatcaccat ttccatcaga tgaaggactc cattgggaac aaatggctaa aacttatagg
     5461 attctggatg ggttgtgaat gttttgggtt tttaagtgct attaatattt ttttatcaat
     5521 aaacaaagaa acaaaa
//
LOCUS       XM_032647736            5529 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X5, mRNA.
ACCESSION   XM_032647736
VERSION     XM_032647736.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5529
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5529
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             541..5394
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X5"
                     /protein_id="XP_032503627.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARQGLGAGGQKGDRGDPGIQGLKGE
                     KGESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGE
                     AGPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHP
                     GFGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGD
                     GCTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQG
                     EPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPA
                     GASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGAP
                     GLWMGSSWQPGPQGPPGIPGPPGPPGMPGLQDLPHGTFGVPGNNGLPGQPGLTAELGS
                     LPIEQHVLKSICGDCVQRQTAHPAALLESGEKGDQGIPGVPGLDSCARCFTERERPRA
                     EEARGDNGEGDAGCAGSPGLPGAPGLPGQRGEEGPPGMRGSPGPPGPIGLQGERGLRG
                     LTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGP
                     AGPRGERGPQGNLGEKGDQGFQGQPGFPGPLGPPGFPGKAGAPGPPGPQAEKGSEGIR
                     GPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAGPPGLMGPPGFKGKPG
                     HPGLPGLKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHVGPPGSPGQPGPAGI
                     SAVGPKGDRGSTGERGLSGLPGQPGPPGHPGPPGEPGADGEAGKEGPPGKQGIYGPPG
                     PKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPSGPPGPAGERGHPGSPGPAGSPGL
                     PGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKD
                     GPPGRPGAPGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDTGVGIAGEVGLPGPPGP
                     QGPPGYGKMGATGPMGQQGIPGIPGAPGSMGPPGKAGHCNPSDCFGAMPMEQEYPPMK
                     NMKGPFG"
     misc_feature    688..1233
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1531..>2244
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2086..>2949
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2806..>3228
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3073..>3933
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3781..>4416
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4099..>4830
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4510..>5319
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 gccggactcc ccgcccaccc gcctaccgcc agagcccctt gcagggcaac tccgggcacg
       61 cagggtcccg ccttgctcgc tcgcttacct ggcgcggggc aagtgggagg gatgggcttg
      121 ggagcgccgc caggccagga gtgggccttg cgtcctgccg cctctgccac cgctggagac
      181 ccctcccggt cctccctccc tcctcctgcc tggcgggcgg gtccagctgt gttccattag
      241 cggccctggc aagtccccag ccccctggag cctccccctc ttcccccacc cggagtggcc
      301 ggcagtcccc ggcaggcgag cgggcatgcg agcggggcag cattcagccc cagaagctca
      361 ggacagggga aactggggac ccgaggccgg ccagaagtaa tcgaggacct tccagcgggt
      421 ctgaagaacc caggccctgc ttcccgcggt tcgctgcgtt gggctgcctg gattacacag
      481 tgaggtggtg gggatcccca gccacggtgc tgtggctgcg gccgacttct ttggaccagg
      541 atgtgggcat cttgggctcc tggcttgtgg ctgctcagtc tctgtgttat ctgcagccat
      601 gaggcagata caggggagcg gtgcccacct tcacagcaag aaggactcaa gttggaacac
      661 agaagcgact tatcgaccaa cgtgactggc ttcggtctca tccgccgact caacctcatg
      721 aagatatctg ccattaagaa gatccgaaac cccaagggac ctctcatcct gcgactggga
      781 gcggtctcag tcacccagcc cgtgcgacgt gtattccctc ggggcctccc cagtgagttt
      841 gccctggtgc tgacactact gctgaagaaa cacacccacc agaatacgtg gtatttgttt
      901 caagtgaccg atggaaatgg gtacccgcag atttccctgg aagtcaacag ccaagagcgg
      961 agcctggagt tccgggcccg gggccaagat ggcgactttg tgtcctgcat cttctcagtg
     1021 ccccagctct ttgacctgcg ttggcacaag ctgatgctga gcgtggctga acgcgtagcc
     1081 tctgtgcacg tggactgcac atcagtctcc tcccggcctc tggggccctg gcgacccatg
     1141 cagcctgtgg gccatgtttt tctgggctta gatgctgagc agggcaaacc tgtcttgttt
     1201 gaccttcagc aggcacacat ctactgtgac ccggatcttg tgctggagga gggctgctgt
     1261 gagattttgc cgggagggtg tcccccagag acctccaagg cccgccggga cacgcagagc
     1321 aatgagctca tcgagatcaa tccacagact gagggcaagg tctacacccg ctgcttctgc
     1381 ctggaggagc cgcaaaacag caaggtgggc gcccagctga cgggaagaat cagccaggag
     1441 gcagagagcg aaacaaaggt ccaccaggag acagcagtgg atgagtgccc accctgtgtc
     1501 catggtgccc gggagagcaa tgtcacaatt ggtccctctg gcccccagag agggaaaggt
     1561 gagcagggcc tgcctggtcc atcaggaccc aagggagaga agggagcccg gggcaatgac
     1621 tgtgttcgaa tctccccgga tgccccgctt cagtgtgcag aaggcccaaa gggagagaag
     1681 ggggagtcgg gagccttggg accctcagga ctccctggct ccacaggcca gaagggccag
     1741 aaaggcgaca agggagacgg aggcatcaag ggcttgccag gaaagccagg ccgagatggc
     1801 cggccaggag agatctgtgt catggggccc aaagggcaga agggagaccc tggctttgtt
     1861 gggcctgagg ggctggcggg agagcctggg ccccctggcc tccctgggcc cgctgggata
     1921 ggacttcctg ggaccccggg ggacccaggt ggccctccag gccccaaggg agacaagggc
     1981 agctctggag tgccgggaaa ggaaggtcct ggtgggaaac ctgggaagcc aggggttcca
     2041 gggctgaagg gagagaaggg tgacccctgc gaagtgtgcc cagcgctgcc tgaagggttc
     2101 cagaactttg tggggctccc tggaaagcca gggcccaagg gagaaccggg tgttcctgca
     2161 ccagccaggc agggcctggg agctggtgga caaaagggtg atcggggtga ccctggcatc
     2221 caaggcctca aaggagaaaa gggggagtcc tgcttgtcct gcagctcagc catagcagcc
     2281 caacatcttg ggccctctat agggcccaaa ggagatgtgg gccctcctgg cctcggtttg
     2341 cctggccttc cggggaaagt tggggctcca gggccaacag ggctgaaagg agagaagggt
     2401 aatttcgggg aggcagggcc agccggcggt ctggggcctc cagggccagt gggacccaca
     2461 ggcatcaagg gggagaaggg ggagccttgt gagtcatgca gggccctgtc caagcaccag
     2521 gatggggaca gccacgtggt ggccttgcct gggcctcccg gagagaaggg ggagcctggg
     2581 catccaggct ttggcctgcc aggaaaacag ggcaaagctg gagagcatgg attgaaggga
     2641 cagaagggcg atgctgggaa tcccggagat cctggaacac cgggcaccat ggggcggccg
     2701 ggactgtcgg gagagcctgg ggttcggggc ccttcagggc caaaaggaga aaagggtgat
     2761 ggctgcactg cctgccccag cctgcagggg gcgttgacca acagggcagg accgcctggg
     2821 aagccaggcc tgaagggaga tccggggcct gaaggcgtgg gcaggcctgg taaaccgggc
     2881 cagcctggtc taccaggagt tcaaggaccc ccaggactga agggcataca gggagagcca
     2941 gggcctccag gagtgggagt ccaggggccc cagggggagc ctggagccca gggtttgcct
     3001 ggcattcagg ggcttctggg acctcggggg ccacctggcc ctgctggaga gaagggtgcc
     3061 aagggatctc caggggtgaa aggagccact gggcctgtgg gacctgctgg tgccagtgtc
     3121 tctgggcctc cggggcctga tgggcagcaa ggacagactg gacttccagg agccagaggg
     3181 atgctgggtg aaaagggagc tcagggagaa aagggtgagc caggggagtg ctcctgcccc
     3241 tcccgagggg accccatctt ctctggcatg ccgggtgctc cgggactttg gatgggcagc
     3301 tcctggcagc cgggcccgca gggtcctccg ggtattcccg gaccaccagg cccccctgga
     3361 atgcctgggc ttcaggacct acctcatggg acttttggag tgcctgggaa caacggtttg
     3421 ccaggacagc ctgggctgac tgcagagctg ggatccttgc ccattgaaca gcatgtcctt
     3481 aagagcatct gcggggactg tgtccagagg cagacggccc acccggcggc cctcctggaa
     3541 agtggagaga agggagacca gggcatcccc ggcgtgccag gccttgacag ctgcgcccgg
     3601 tgcttcacag agcgggagcg gccgagggct gaggaggccc ggggagataa cggcgaggga
     3661 gatgcgggct gtgcagggag ccccggcctg cccggtgctc caggactgcc cggccagaga
     3721 ggagaagagg gtccgcccgg catgaggggc tccccgggtc ctccaggccc tattggtctt
     3781 caaggagagc gaggcctcag gggcctgaca ggagagaagg gggaaccggg tcctccaggg
     3841 caacctggct acccaggtgc catgggcccc ccgggactgc ctggcatcaa gggggagcgc
     3901 ggctacgcgg gttccccggg agagaaggga gaatcgggcc caccaggatc tgaaggcctc
     3961 ccaggtcccc caggcccagc aggtccccga ggagagcgag gaccccaagg gaacttgggt
     4021 gagaaaggtg accagggatt tcaaggccag ccgggctttc caggcccact gggtccccct
     4081 ggattcccag gcaaagctgg agcacctggc ccacctggcc cccaagcgga gaagggcagt
     4141 gaagggattc gaggtccatc aggcctgcct ggtccccctg gaccaccagg atctcccggg
     4201 attcagggcc ctgccggtct ggatggtctg gatgggaagg acggcaagcc tggcgtgagg
     4261 ggggaccctg gtcctgctgg cccccccgga ctcatgggac ccccgggctt caagggaaaa
     4321 ccgggccatc ccggcctccc aggactgaag ggtgactgtg gaaagcctgg tcccccgggc
     4381 agcagtggcc gccccggagc agagggtgag cctggtgcca tgggacccca gggaagaccc
     4441 ggcccccctg gccacgttgg gcctccgggg tctccaggcc agccaggccc agctggaatc
     4501 tctgcagtgg gcccaaaagg agaccgagga tccactggag aaaggggcct ttcaggtctt
     4561 ccgggccagc ctggtccccc tggacaccct ggccccccgg gtgaacctgg tgcagatggt
     4621 gaagctggca aagagggacc ccctggaaaa cagggaatct acggaccccc tggtccaaag
     4681 ggtgacccgg gaccttcagg gcagaagggc caggcagggg agaagggaag agctggcatg
     4741 cctggcgggc ctggcaagag tggctccatg ggaccttctg ggccgccggg tcctgcagga
     4801 gagagaggcc accctggatc tccaggacct gcggggagcc ctggtctgcc cggggtgcct
     4861 ggctccatgg gagacatggt gaattatgat gaaatcaaga ggttcatcag acaagagatc
     4921 attaaaatgt ttgacgagag gatggcttac tacacctcca ggatgcagtt tcccatggag
     4981 atggcagcag ctccaggacg accagggccc ccagggaagg acggtccccc gggccggcca
     5041 ggtgccccgg gatcacctgg gctccctggt cagattggca gagaaggtcg gcagggcttg
     5101 cccgggttga gaggattgcc tggtaccaaa ggtgaaaagg gagacactgg tgttggcatt
     5161 gcaggagaag ttggtctccc cggcccccca ggtcctcaag gtcctccagg atatggcaag
     5221 atgggtgcaa ctgggccgat gggccagcaa ggcattcctg gcatccctgg cgccccaggc
     5281 tccatgggcc caccgggcaa ggccggccac tgtaacccct ctgactgctt tggggccatg
     5341 ccaatggagc aggagtaccc acccatgaaa aacatgaagg ggccttttgg ctgaaatcac
     5401 catttccatc agatgaagga ctccattggg aacaaatggc taaaacttat aggattctgg
     5461 atgggttgtg aatgttttgg gtttttaagt gctattaata tttttttatc aataaacaaa
     5521 gaaacaaaa
//
LOCUS       XM_032647746            5527 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X6, mRNA.
ACCESSION   XM_032647746
VERSION     XM_032647746.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5527
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5527
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             542..5392
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X6"
                     /protein_id="XP_032503637.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARQGLGAGGQKGDRGDPGIQGLKGE
                     KGESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGE
                     AGPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHP
                     GFGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGD
                     GCTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQG
                     EPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPA
                     GASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGPP
                     GIPGPPGPPGMPGLQDLPHGTFGVPGNNGLPGQPGLTAELGSLPIEQHVLKSICGDCV
                     QRQTAHPAALLESGEKGDQGIPGVPGLDSCARCFTERERPRAEEARGDNGEGDAGCAG
                     SPGLPGAPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLRGL
                     TGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPA
                     GPRGERGPQGNLGEKGDQGFQGQPGFPGPLGPPGFPGKAGAPGPPGPQAEKGSEGIRG
                     PSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAGPPGLMGPPGFKGKPGH
                     PGLPGLKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHVGPPGSPGQPGPAGIS
                     AVGPKGDRGSTGERGLSGLPGQPGPPGHPGPPGEPGADGEAGKEGPPGKQGIYGPPGP
                     KGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPSGPPGPAGERGHPGSPGPAGSPGLP
                     GVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDG
                     PPGRPGAPGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDTGVGIAGEVGLPGPPGPQ
                     GPPGYGKMGATGPMGQQGIPGIPGAPGSMGPPGKAGHCNPSDCFGAMPMEQEYPPMKN
                     MKGPFG"
     misc_feature    689..1234
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1532..>2245
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2045..>2743
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2507..>3256
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3596..>4393
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4097..>4828
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4508..>5317
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 ggccggactc cccgcccacc cgcctaccgc cagagcccct tgcagggcaa ctccgggcac
       61 gcagggtccc gccttgctcg ctcgcttacc tggcgcgggg caagtgggag ggatgggctt
      121 gggagcgccg ccaggccagg agtgggcctt gcgtcctgcc gcctctgcca ccgctggaga
      181 cccctcccgg tcctccctcc ctcctcctgc ctggcgggcg ggtccagctg tgttccatta
      241 gcggccctgg caagtcccca gccccctgga gcctccccct cttcccccac ccggagtggc
      301 cggcagtccc cggcaggcga gcgggcatgc gagcggggca gcattcagcc ccagaagctc
      361 aggacagggg aaactgggga cccgaggccg gccagaagta atcgaggacc ttccagcggg
      421 tctgaagaac ccaggccctg cttcccgcgg ttcgctgcgt tgggctgcct ggattacaca
      481 gtgaggtggt ggggatcccc agccacggtg ctgtggctgc ggccgacttc tttggaccag
      541 gatgtgggca tcttgggctc ctggcttgtg gctgctcagt ctctgtgtta tctgcagcca
      601 tgaggcagat acaggggagc ggtgcccacc ttcacagcaa gaaggactca agttggaaca
      661 cagaagcgac ttatcgacca acgtgactgg cttcggtctc atccgccgac tcaacctcat
      721 gaagatatct gccattaaga agatccgaaa ccccaaggga cctctcatcc tgcgactggg
      781 agcggtctca gtcacccagc ccgtgcgacg tgtattccct cggggcctcc ccagtgagtt
      841 tgccctggtg ctgacactac tgctgaagaa acacacccac cagaatacgt ggtatttgtt
      901 tcaagtgacc gatggaaatg ggtacccgca gatttccctg gaagtcaaca gccaagagcg
      961 gagcctggag ttccgggccc ggggccaaga tggcgacttt gtgtcctgca tcttctcagt
     1021 gccccagctc tttgacctgc gttggcacaa gctgatgctg agcgtggctg aacgcgtagc
     1081 ctctgtgcac gtggactgca catcagtctc ctcccggcct ctggggccct ggcgacccat
     1141 gcagcctgtg ggccatgttt ttctgggctt agatgctgag cagggcaaac ctgtcttgtt
     1201 tgaccttcag caggcacaca tctactgtga cccggatctt gtgctggagg agggctgctg
     1261 tgagattttg ccgggagggt gtcccccaga gacctccaag gcccgccggg acacgcagag
     1321 caatgagctc atcgagatca atccacagac tgagggcaag gtctacaccc gctgcttctg
     1381 cctggaggag ccgcaaaaca gcaaggtggg cgcccagctg acgggaagaa tcagccagga
     1441 ggcagagagc gaaacaaagg tccaccagga gacagcagtg gatgagtgcc caccctgtgt
     1501 ccatggtgcc cgggagagca atgtcacaat tggtccctct ggcccccaga gagggaaagg
     1561 tgagcagggc ctgcctggtc catcaggacc caagggagag aagggagccc ggggcaatga
     1621 ctgtgttcga atctccccgg atgccccgct tcagtgtgca gaaggcccaa agggagagaa
     1681 gggggagtcg ggagccttgg gaccctcagg actccctggc tccacaggcc agaagggcca
     1741 gaaaggcgac aagggagacg gaggcatcaa gggcttgcca ggaaagccag gccgagatgg
     1801 ccggccagga gagatctgtg tcatggggcc caaagggcag aagggagacc ctggctttgt
     1861 tgggcctgag gggctggcgg gagagcctgg gccccctggc ctccctgggc ccgctgggat
     1921 aggacttcct gggaccccgg gggacccagg tggccctcca ggccccaagg gagacaaggg
     1981 cagctctgga gtgccgggaa aggaaggtcc tggtgggaaa cctgggaagc caggggttcc
     2041 agggctgaag ggagagaagg gtgacccctg cgaagtgtgc ccagcgctgc ctgaagggtt
     2101 ccagaacttt gtggggctcc ctggaaagcc agggcccaag ggagaaccgg gtgttcctgc
     2161 accagccagg cagggcctgg gagctggtgg acaaaagggt gatcggggtg accctggcat
     2221 ccaaggcctc aaaggagaaa agggggagtc ctgcttgtcc tgcagctcag ccatagcagc
     2281 ccaacatctt gggccctcta tagggcccaa aggagatgtg ggccctcctg gcctcggttt
     2341 gcctggcctt ccggggaaag ttggggctcc agggccaaca gggctgaaag gagagaaggg
     2401 taatttcggg gaggcagggc cagccggcgg tctggggcct ccagggccag tgggacccac
     2461 aggcatcaag ggggagaagg gggagccttg tgagtcatgc agggccctgt ccaagcacca
     2521 ggatggggac agccacgtgg tggccttgcc tgggcctccc ggagagaagg gggagcctgg
     2581 gcatccaggc tttggcctgc caggaaaaca gggcaaagct ggagagcatg gattgaaggg
     2641 acagaagggc gatgctggga atcccggaga tcctggaaca ccgggcacca tggggcggcc
     2701 gggactgtcg ggagagcctg gggttcgggg cccttcaggg ccaaaaggag aaaagggtga
     2761 tggctgcact gcctgcccca gcctgcaggg ggcgttgacc aacagggcag gaccgcctgg
     2821 gaagccaggc ctgaagggag atccggggcc tgaaggcgtg ggcaggcctg gtaaaccggg
     2881 ccagcctggt ctaccaggag ttcaaggacc cccaggactg aagggcatac agggagagcc
     2941 agggcctcca ggagtgggag tccaggggcc ccagggggag cctggagccc agggtttgcc
     3001 tggcattcag gggcttctgg gacctcgggg gccacctggc cctgctggag agaagggtgc
     3061 caagggatct ccaggggtga aaggagccac tgggcctgtg ggacctgctg gtgccagtgt
     3121 ctctgggcct ccggggcctg atgggcagca aggacagact ggacttccag gagccagagg
     3181 gatgctgggt gaaaagggag ctcagggaga aaagggtgag ccaggggagt gctcctgccc
     3241 ctcccgaggg gaccccatct tctctggcat gccgggtcct ccgggtattc ccggaccacc
     3301 aggcccccct ggaatgcctg ggcttcagga cctacctcat gggacttttg gagtgcctgg
     3361 gaacaacggt ttgccaggac agcctgggct gactgcagag ctgggatcct tgcccattga
     3421 acagcatgtc cttaagagca tctgcgggga ctgtgtccag aggcagacgg cccacccggc
     3481 ggccctcctg gaaagtggag agaagggaga ccagggcatc cccggcgtgc caggccttga
     3541 cagctgcgcc cggtgcttca cagagcggga gcggccgagg gctgaggagg cccggggaga
     3601 taacggcgag ggagatgcgg gctgtgcagg gagccccggc ctgcccggtg ctccaggact
     3661 gcccggccag agaggagaag agggtccgcc cggcatgagg ggctccccgg gtcctccagg
     3721 ccctattggc cccccaggtt ttcctggtgc tgttggctcc cccggattgc ctggtcttca
     3781 aggagagcga ggcctcaggg gcctgacagg agagaagggg gaaccgggtc ctccagggca
     3841 acctggctac ccaggtgcca tgggcccccc gggactgcct ggcatcaagg gggagcgcgg
     3901 ctacgcgggt tccccgggag agaagggaga atcgggccca ccaggatctg aaggcctccc
     3961 aggtccccca ggcccagcag gtccccgagg agagcgagga ccccaaggga acttgggtga
     4021 gaaaggtgac cagggatttc aaggccagcc gggctttcca ggcccactgg gtccccctgg
     4081 attcccaggc aaagctggag cacctggccc acctggcccc caagcggaga agggcagtga
     4141 agggattcga ggtccatcag gcctgcctgg tccccctgga ccaccaggat ctcccgggat
     4201 tcagggccct gccggtctgg atggtctgga tgggaaggac ggcaagcctg gcgtgagggg
     4261 ggaccctggt cctgctggcc cccccggact catgggaccc ccgggcttca agggaaaacc
     4321 gggccatccc ggcctcccag gactgaaggg tgactgtgga aagcctggtc ccccgggcag
     4381 cagtggccgc cccggagcag agggtgagcc tggtgccatg ggaccccagg gaagacccgg
     4441 cccccctggc cacgttgggc ctccggggtc tccaggccag ccaggcccag ctggaatctc
     4501 tgcagtgggc ccaaaaggag accgaggatc cactggagaa aggggccttt caggtcttcc
     4561 gggccagcct ggtccccctg gacaccctgg ccccccgggt gaacctggtg cagatggtga
     4621 agctggcaaa gagggacccc ctggaaaaca gggaatctac ggaccccctg gtccaaaggg
     4681 tgacccggga ccttcagggc agaagggcca ggcaggggag aagggaagag ctggcatgcc
     4741 tggcgggcct ggcaagagtg gctccatggg accttctggg ccgccgggtc ctgcaggaga
     4801 gagaggccac cctggatctc caggacctgc ggggagccct ggtctgcccg gggtgcctgg
     4861 ctccatggga gacatggtga attatgatga aatcaagagg ttcatcagac aagagatcat
     4921 taaaatgttt gacgagagga tggcttacta cacctccagg atgcagtttc ccatggagat
     4981 ggcagcagct ccaggacgac cagggccccc agggaaggac ggtcccccgg gccggccagg
     5041 tgccccggga tcacctgggc tccctggtca gattggcaga gaaggtcggc agggcttgcc
     5101 cgggttgaga ggattgcctg gtaccaaagg tgaaaaggga gacactggtg ttggcattgc
     5161 aggagaagtt ggtctccccg gccccccagg tcctcaaggt cctccaggat atggcaagat
     5221 gggtgcaact gggccgatgg gccagcaagg cattcctggc atccctggcg ccccaggctc
     5281 catgggccca ccgggcaagg ccggccactg taacccctct gactgctttg gggccatgcc
     5341 aatggagcag gagtacccac ccatgaaaaa catgaagggg ccttttggct gaaatcacca
     5401 tttccatcag atgaaggact ccattgggaa caaatggcta aaacttatag gattctggat
     5461 gggttgtgaa tgttttgggt ttttaagtgc tattaatatt tttttatcaa taaacaaaga
     5521 aacaaaa
//
LOCUS       XM_032647754            5506 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X7, mRNA.
ACCESSION   XM_032647754
VERSION     XM_032647754.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5506
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5506
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             539..5371
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X7"
                     /protein_id="XP_032503645.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARQGLGAGGQKGDRGDPGIQGLKGE
                     KGESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGE
                     AGPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHP
                     GFGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGD
                     GCTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQG
                     EPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPA
                     GASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGAP
                     GLWMGSSWQPGPQGPPGIPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHV
                     LKSICGDCVQRQTAHPAALLESGEKGDQGIPGVPGLDSCARCFTERERPRAEEARGDN
                     GEGDAGCAGSPGLPGAPGLPGQRGEEGPPGMRGSPGPPGPIGLQGERGLRGLTGEKGE
                     PGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGER
                     GPQGNLGEKGDQGFQGQPGFPGPLGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPG
                     PPGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAGPPGLMGPPGFKGKPGHPGLPGL
                     KGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHVGPPGSPGQPGPAGISAVGPKG
                     DRGSTGERGLSGLPGQPGPPGHPGPPGEPGADGEAGKEGPPGKQGIYGPPGPKGDPGP
                     SGQKGQAGEKGRAGMPGGPGKSGSMGPSGPPGPAGERGHPGSPGPAGSPGLPGVPGSM
                     GDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGPPGRPG
                     APGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDTGVGIAGEVGLPGPPGPQGPPGYG
                     KMGATGPMGQQGIPGIPGAPGSMGPPGKAGHCNPSDCFGAMPMEQEYPPMKNMKGPFG
                     "
     misc_feature    686..1231
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1529..>2242
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2084..>2947
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2804..>3226
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3071..>3910
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3758..>4393
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4076..>4807
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4487..>5296
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 cggactcccc gcccacccgc ctaccgccag agccccttgc agggcaactc cgggcacgca
       61 gggtcccgcc ttgctcgctc gcttacctgg cgcggggcaa gtgggaggga tgggcttggg
      121 agcgccgcca ggccaggagt gggccttgcg tcctgccgcc tctgccaccg ctggagaccc
      181 ctcccggtcc tccctccctc ctcctgcctg gcgggcgggt ccagctgtgt tccattagcg
      241 gccctggcaa gtccccagcc ccctggagcc tccccctctt cccccacccg gagtggccgg
      301 cagtccccgg caggcgagcg ggcatgcgag cggggcagca ttcagcccca gaagctcagg
      361 acaggggaaa ctggggaccc gaggccggcc agaagtaatc gaggaccttc cagcgggtct
      421 gaagaaccca ggccctgctt cccgcggttc gctgcgttgg gctgcctgga ttacacagtg
      481 aggtggtggg gatccccagc cacggtgctg tggctgcggc cgacttcttt ggaccaggat
      541 gtgggcatct tgggctcctg gcttgtggct gctcagtctc tgtgttatct gcagccatga
      601 ggcagataca ggggagcggt gcccaccttc acagcaagaa ggactcaagt tggaacacag
      661 aagcgactta tcgaccaacg tgactggctt cggtctcatc cgccgactca acctcatgaa
      721 gatatctgcc attaagaaga tccgaaaccc caagggacct ctcatcctgc gactgggagc
      781 ggtctcagtc acccagcccg tgcgacgtgt attccctcgg ggcctcccca gtgagtttgc
      841 cctggtgctg acactactgc tgaagaaaca cacccaccag aatacgtggt atttgtttca
      901 agtgaccgat ggaaatgggt acccgcagat ttccctggaa gtcaacagcc aagagcggag
      961 cctggagttc cgggcccggg gccaagatgg cgactttgtg tcctgcatct tctcagtgcc
     1021 ccagctcttt gacctgcgtt ggcacaagct gatgctgagc gtggctgaac gcgtagcctc
     1081 tgtgcacgtg gactgcacat cagtctcctc ccggcctctg gggccctggc gacccatgca
     1141 gcctgtgggc catgtttttc tgggcttaga tgctgagcag ggcaaacctg tcttgtttga
     1201 ccttcagcag gcacacatct actgtgaccc ggatcttgtg ctggaggagg gctgctgtga
     1261 gattttgccg ggagggtgtc ccccagagac ctccaaggcc cgccgggaca cgcagagcaa
     1321 tgagctcatc gagatcaatc cacagactga gggcaaggtc tacacccgct gcttctgcct
     1381 ggaggagccg caaaacagca aggtgggcgc ccagctgacg ggaagaatca gccaggaggc
     1441 agagagcgaa acaaaggtcc accaggagac agcagtggat gagtgcccac cctgtgtcca
     1501 tggtgcccgg gagagcaatg tcacaattgg tccctctggc ccccagagag ggaaaggtga
     1561 gcagggcctg cctggtccat caggacccaa gggagagaag ggagcccggg gcaatgactg
     1621 tgttcgaatc tccccggatg ccccgcttca gtgtgcagaa ggcccaaagg gagagaaggg
     1681 ggagtcggga gccttgggac cctcaggact ccctggctcc acaggccaga agggccagaa
     1741 aggcgacaag ggagacggag gcatcaaggg cttgccagga aagccaggcc gagatggccg
     1801 gccaggagag atctgtgtca tggggcccaa agggcagaag ggagaccctg gctttgttgg
     1861 gcctgagggg ctggcgggag agcctgggcc ccctggcctc cctgggcccg ctgggatagg
     1921 acttcctggg accccggggg acccaggtgg ccctccaggc cccaagggag acaagggcag
     1981 ctctggagtg ccgggaaagg aaggtcctgg tgggaaacct gggaagccag gggttccagg
     2041 gctgaaggga gagaagggtg acccctgcga agtgtgccca gcgctgcctg aagggttcca
     2101 gaactttgtg gggctccctg gaaagccagg gcccaaggga gaaccgggtg ttcctgcacc
     2161 agccaggcag ggcctgggag ctggtggaca aaagggtgat cggggtgacc ctggcatcca
     2221 aggcctcaaa ggagaaaagg gggagtcctg cttgtcctgc agctcagcca tagcagccca
     2281 acatcttggg ccctctatag ggcccaaagg agatgtgggc cctcctggcc tcggtttgcc
     2341 tggccttccg gggaaagttg gggctccagg gccaacaggg ctgaaaggag agaagggtaa
     2401 tttcggggag gcagggccag ccggcggtct ggggcctcca gggccagtgg gacccacagg
     2461 catcaagggg gagaaggggg agccttgtga gtcatgcagg gccctgtcca agcaccagga
     2521 tggggacagc cacgtggtgg ccttgcctgg gcctcccgga gagaaggggg agcctgggca
     2581 tccaggcttt ggcctgccag gaaaacaggg caaagctgga gagcatggat tgaagggaca
     2641 gaagggcgat gctgggaatc ccggagatcc tggaacaccg ggcaccatgg ggcggccggg
     2701 actgtcggga gagcctgggg ttcggggccc ttcagggcca aaaggagaaa agggtgatgg
     2761 ctgcactgcc tgccccagcc tgcagggggc gttgaccaac agggcaggac cgcctgggaa
     2821 gccaggcctg aagggagatc cggggcctga aggcgtgggc aggcctggta aaccgggcca
     2881 gcctggtcta ccaggagttc aaggaccccc aggactgaag ggcatacagg gagagccagg
     2941 gcctccagga gtgggagtcc aggggcccca gggggagcct ggagcccagg gtttgcctgg
     3001 cattcagggg cttctgggac ctcgggggcc acctggccct gctggagaga agggtgccaa
     3061 gggatctcca ggggtgaaag gagccactgg gcctgtggga cctgctggtg ccagtgtctc
     3121 tgggcctccg gggcctgatg ggcagcaagg acagactgga cttccaggag ccagagggat
     3181 gctgggtgaa aagggagctc agggagaaaa gggtgagcca ggggagtgct cctgcccctc
     3241 ccgaggggac cccatcttct ctggcatgcc gggtgctccg ggactttgga tgggcagctc
     3301 ctggcagccg ggcccgcagg gtcctccggg tattcccgga ccaccaggcc cccctggaat
     3361 gcctgggctt cagggagtgc ctgggaacaa cggtttgcca ggacagcctg ggctgactgc
     3421 agagctggga tccttgccca ttgaacagca tgtccttaag agcatctgcg gggactgtgt
     3481 ccagaggcag acggcccacc cggcggccct cctggaaagt ggagagaagg gagaccaggg
     3541 catccccggc gtgccaggcc ttgacagctg cgcccggtgc ttcacagagc gggagcggcc
     3601 gagggctgag gaggcccggg gagataacgg cgagggagat gcgggctgtg cagggagccc
     3661 cggcctgccc ggtgctccag gactgcccgg ccagagagga gaagagggtc cgcccggcat
     3721 gaggggctcc ccgggtcctc caggccctat tggtcttcaa ggagagcgag gcctcagggg
     3781 cctgacagga gagaaggggg aaccgggtcc tccagggcaa cctggctacc caggtgccat
     3841 gggccccccg ggactgcctg gcatcaaggg ggagcgcggc tacgcgggtt ccccgggaga
     3901 gaagggagaa tcgggcccac caggatctga aggcctccca ggtcccccag gcccagcagg
     3961 tccccgagga gagcgaggac cccaagggaa cttgggtgag aaaggtgacc agggatttca
     4021 aggccagccg ggctttccag gcccactggg tccccctgga ttcccaggca aagctggagc
     4081 acctggccca cctggccccc aagcggagaa gggcagtgaa gggattcgag gtccatcagg
     4141 cctgcctggt ccccctggac caccaggatc tcccgggatt cagggccctg ccggtctgga
     4201 tggtctggat gggaaggacg gcaagcctgg cgtgaggggg gaccctggtc ctgctggccc
     4261 ccccggactc atgggacccc cgggcttcaa gggaaaaccg ggccatcccg gcctcccagg
     4321 actgaagggt gactgtggaa agcctggtcc cccgggcagc agtggccgcc ccggagcaga
     4381 gggtgagcct ggtgccatgg gaccccaggg aagacccggc ccccctggcc acgttgggcc
     4441 tccggggtct ccaggccagc caggcccagc tggaatctct gcagtgggcc caaaaggaga
     4501 ccgaggatcc actggagaaa ggggcctttc aggtcttccg ggccagcctg gtccccctgg
     4561 acaccctggc cccccgggtg aacctggtgc agatggtgaa gctggcaaag agggaccccc
     4621 tggaaaacag ggaatctacg gaccccctgg tccaaagggt gacccgggac cttcagggca
     4681 gaagggccag gcaggggaga agggaagagc tggcatgcct ggcgggcctg gcaagagtgg
     4741 ctccatggga ccttctgggc cgccgggtcc tgcaggagag agaggccacc ctggatctcc
     4801 aggacctgcg gggagccctg gtctgcccgg ggtgcctggc tccatgggag acatggtgaa
     4861 ttatgatgaa atcaagaggt tcatcagaca agagatcatt aaaatgtttg acgagaggat
     4921 ggcttactac acctccagga tgcagtttcc catggagatg gcagcagctc caggacgacc
     4981 agggccccca gggaaggacg gtcccccggg ccggccaggt gccccgggat cacctgggct
     5041 ccctggtcag attggcagag aaggtcggca gggcttgccc gggttgagag gattgcctgg
     5101 taccaaaggt gaaaagggag acactggtgt tggcattgca ggagaagttg gtctccccgg
     5161 ccccccaggt cctcaaggtc ctccaggata tggcaagatg ggtgcaactg ggccgatggg
     5221 ccagcaaggc attcctggca tccctggcgc cccaggctcc atgggcccac cgggcaaggc
     5281 cggccactgt aacccctctg actgctttgg ggccatgcca atggagcagg agtacccacc
     5341 catgaaaaac atgaaggggc cttttggctg aaatcaccat ttccatcaga tgaaggactc
     5401 cattgggaac aaatggctaa aacttatagg attctggatg ggttgtgaat gttttgggtt
     5461 tttaagtgct attaatattt ttttatcaat aaacaaagaa acaaaa
//
LOCUS       XM_032647763            5504 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X8, mRNA.
ACCESSION   XM_032647763
VERSION     XM_032647763.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5504
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5504
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             540..5369
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X8"
                     /protein_id="XP_032503654.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARQGLGAGGQKGDRGDPGIQGLKGE
                     KGESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGE
                     AGPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHP
                     GFGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGD
                     GCTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQG
                     EPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPA
                     GASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGPP
                     GIPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHVLKSICGDCVQRQTAHP
                     AALLESGEKGDQGIPGVPGLDSCARCFTERERPRAEEARGDNGEGDAGCAGSPGLPGA
                     PGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLRGLTGEKGEP
                     GPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERG
                     PQGNLGEKGDQGFQGQPGFPGPLGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGP
                     PGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAGPPGLMGPPGFKGKPGHPGLPGLK
                     GDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHVGPPGSPGQPGPAGISAVGPKGD
                     RGSTGERGLSGLPGQPGPPGHPGPPGEPGADGEAGKEGPPGKQGIYGPPGPKGDPGPS
                     GQKGQAGEKGRAGMPGGPGKSGSMGPSGPPGPAGERGHPGSPGPAGSPGLPGVPGSMG
                     DMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGPPGRPGA
                     PGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDTGVGIAGEVGLPGPPGPQGPPGYGK
                     MGATGPMGQQGIPGIPGAPGSMGPPGKAGHCNPSDCFGAMPMEQEYPPMKNMKGPFG"
     misc_feature    687..1232
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1530..>2243
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <1833..>2744
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2505..>3221
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3573..>4370
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4074..>4805
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4485..>5294
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 ccggactccc cgcccacccg cctaccgcca gagccccttg cagggcaact ccgggcacgc
       61 agggtcccgc cttgctcgct cgcttacctg gcgcggggca agtgggaggg atgggcttgg
      121 gagcgccgcc aggccaggag tgggccttgc gtcctgccgc ctctgccacc gctggagacc
      181 cctcccggtc ctccctccct cctcctgcct ggcgggcggg tccagctgtg ttccattagc
      241 ggccctggca agtccccagc cccctggagc ctccccctct tcccccaccc ggagtggccg
      301 gcagtccccg gcaggcgagc gggcatgcga gcggggcagc attcagcccc agaagctcag
      361 gacaggggaa actggggacc cgaggccggc cagaagtaat cgaggacctt ccagcgggtc
      421 tgaagaaccc aggccctgct tcccgcggtt cgctgcgttg ggctgcctgg attacacagt
      481 gaggtggtgg ggatccccag ccacggtgct gtggctgcgg ccgacttctt tggaccagga
      541 tgtgggcatc ttgggctcct ggcttgtggc tgctcagtct ctgtgttatc tgcagccatg
      601 aggcagatac aggggagcgg tgcccacctt cacagcaaga aggactcaag ttggaacaca
      661 gaagcgactt atcgaccaac gtgactggct tcggtctcat ccgccgactc aacctcatga
      721 agatatctgc cattaagaag atccgaaacc ccaagggacc tctcatcctg cgactgggag
      781 cggtctcagt cacccagccc gtgcgacgtg tattccctcg gggcctcccc agtgagtttg
      841 ccctggtgct gacactactg ctgaagaaac acacccacca gaatacgtgg tatttgtttc
      901 aagtgaccga tggaaatggg tacccgcaga tttccctgga agtcaacagc caagagcgga
      961 gcctggagtt ccgggcccgg ggccaagatg gcgactttgt gtcctgcatc ttctcagtgc
     1021 cccagctctt tgacctgcgt tggcacaagc tgatgctgag cgtggctgaa cgcgtagcct
     1081 ctgtgcacgt ggactgcaca tcagtctcct cccggcctct ggggccctgg cgacccatgc
     1141 agcctgtggg ccatgttttt ctgggcttag atgctgagca gggcaaacct gtcttgtttg
     1201 accttcagca ggcacacatc tactgtgacc cggatcttgt gctggaggag ggctgctgtg
     1261 agattttgcc gggagggtgt cccccagaga cctccaaggc ccgccgggac acgcagagca
     1321 atgagctcat cgagatcaat ccacagactg agggcaaggt ctacacccgc tgcttctgcc
     1381 tggaggagcc gcaaaacagc aaggtgggcg cccagctgac gggaagaatc agccaggagg
     1441 cagagagcga aacaaaggtc caccaggaga cagcagtgga tgagtgccca ccctgtgtcc
     1501 atggtgcccg ggagagcaat gtcacaattg gtccctctgg cccccagaga gggaaaggtg
     1561 agcagggcct gcctggtcca tcaggaccca agggagagaa gggagcccgg ggcaatgact
     1621 gtgttcgaat ctccccggat gccccgcttc agtgtgcaga aggcccaaag ggagagaagg
     1681 gggagtcggg agccttggga ccctcaggac tccctggctc cacaggccag aagggccaga
     1741 aaggcgacaa gggagacgga ggcatcaagg gcttgccagg aaagccaggc cgagatggcc
     1801 ggccaggaga gatctgtgtc atggggccca aagggcagaa gggagaccct ggctttgttg
     1861 ggcctgaggg gctggcggga gagcctgggc cccctggcct ccctgggccc gctgggatag
     1921 gacttcctgg gaccccgggg gacccaggtg gccctccagg ccccaaggga gacaagggca
     1981 gctctggagt gccgggaaag gaaggtcctg gtgggaaacc tgggaagcca ggggttccag
     2041 ggctgaaggg agagaagggt gacccctgcg aagtgtgccc agcgctgcct gaagggttcc
     2101 agaactttgt ggggctccct ggaaagccag ggcccaaggg agaaccgggt gttcctgcac
     2161 cagccaggca gggcctggga gctggtggac aaaagggtga tcggggtgac cctggcatcc
     2221 aaggcctcaa aggagaaaag ggggagtcct gcttgtcctg cagctcagcc atagcagccc
     2281 aacatcttgg gccctctata gggcccaaag gagatgtggg ccctcctggc ctcggtttgc
     2341 ctggccttcc ggggaaagtt ggggctccag ggccaacagg gctgaaagga gagaagggta
     2401 atttcgggga ggcagggcca gccggcggtc tggggcctcc agggccagtg ggacccacag
     2461 gcatcaaggg ggagaagggg gagccttgtg agtcatgcag ggccctgtcc aagcaccagg
     2521 atggggacag ccacgtggtg gccttgcctg ggcctcccgg agagaagggg gagcctgggc
     2581 atccaggctt tggcctgcca ggaaaacagg gcaaagctgg agagcatgga ttgaagggac
     2641 agaagggcga tgctgggaat cccggagatc ctggaacacc gggcaccatg gggcggccgg
     2701 gactgtcggg agagcctggg gttcggggcc cttcagggcc aaaaggagaa aagggtgatg
     2761 gctgcactgc ctgccccagc ctgcaggggg cgttgaccaa cagggcagga ccgcctggga
     2821 agccaggcct gaagggagat ccggggcctg aaggcgtggg caggcctggt aaaccgggcc
     2881 agcctggtct accaggagtt caaggacccc caggactgaa gggcatacag ggagagccag
     2941 ggcctccagg agtgggagtc caggggcccc agggggagcc tggagcccag ggtttgcctg
     3001 gcattcaggg gcttctggga cctcgggggc cacctggccc tgctggagag aagggtgcca
     3061 agggatctcc aggggtgaaa ggagccactg ggcctgtggg acctgctggt gccagtgtct
     3121 ctgggcctcc ggggcctgat gggcagcaag gacagactgg acttccagga gccagaggga
     3181 tgctgggtga aaagggagct cagggagaaa agggtgagcc aggggagtgc tcctgcccct
     3241 cccgagggga ccccatcttc tctggcatgc cgggtcctcc gggtattccc ggaccaccag
     3301 gcccccctgg aatgcctggg cttcagggag tgcctgggaa caacggtttg ccaggacagc
     3361 ctgggctgac tgcagagctg ggatccttgc ccattgaaca gcatgtcctt aagagcatct
     3421 gcggggactg tgtccagagg cagacggccc acccggcggc cctcctggaa agtggagaga
     3481 agggagacca gggcatcccc ggcgtgccag gccttgacag ctgcgcccgg tgcttcacag
     3541 agcgggagcg gccgagggct gaggaggccc ggggagataa cggcgaggga gatgcgggct
     3601 gtgcagggag ccccggcctg cccggtgctc caggactgcc cggccagaga ggagaagagg
     3661 gtccgcccgg catgaggggc tccccgggtc ctccaggccc tattggcccc ccaggttttc
     3721 ctggtgctgt tggctccccc ggattgcctg gtcttcaagg agagcgaggc ctcaggggcc
     3781 tgacaggaga gaagggggaa ccgggtcctc cagggcaacc tggctaccca ggtgccatgg
     3841 gccccccggg actgcctggc atcaaggggg agcgcggcta cgcgggttcc ccgggagaga
     3901 agggagaatc gggcccacca ggatctgaag gcctcccagg tcccccaggc ccagcaggtc
     3961 cccgaggaga gcgaggaccc caagggaact tgggtgagaa aggtgaccag ggatttcaag
     4021 gccagccggg ctttccaggc ccactgggtc cccctggatt cccaggcaaa gctggagcac
     4081 ctggcccacc tggcccccaa gcggagaagg gcagtgaagg gattcgaggt ccatcaggcc
     4141 tgcctggtcc ccctggacca ccaggatctc ccgggattca gggccctgcc ggtctggatg
     4201 gtctggatgg gaaggacggc aagcctggcg tgagggggga ccctggtcct gctggccccc
     4261 ccggactcat gggacccccg ggcttcaagg gaaaaccggg ccatcccggc ctcccaggac
     4321 tgaagggtga ctgtggaaag cctggtcccc cgggcagcag tggccgcccc ggagcagagg
     4381 gtgagcctgg tgccatggga ccccagggaa gacccggccc ccctggccac gttgggcctc
     4441 cggggtctcc aggccagcca ggcccagctg gaatctctgc agtgggccca aaaggagacc
     4501 gaggatccac tggagaaagg ggcctttcag gtcttccggg ccagcctggt ccccctggac
     4561 accctggccc cccgggtgaa cctggtgcag atggtgaagc tggcaaagag ggaccccctg
     4621 gaaaacaggg aatctacgga ccccctggtc caaagggtga cccgggacct tcagggcaga
     4681 agggccaggc aggggagaag ggaagagctg gcatgcctgg cgggcctggc aagagtggct
     4741 ccatgggacc ttctgggccg ccgggtcctg caggagagag aggccaccct ggatctccag
     4801 gacctgcggg gagccctggt ctgcccgggg tgcctggctc catgggagac atggtgaatt
     4861 atgatgaaat caagaggttc atcagacaag agatcattaa aatgtttgac gagaggatgg
     4921 cttactacac ctccaggatg cagtttccca tggagatggc agcagctcca ggacgaccag
     4981 ggcccccagg gaaggacggt cccccgggcc ggccaggtgc cccgggatca cctgggctcc
     5041 ctggtcagat tggcagagaa ggtcggcagg gcttgcccgg gttgagagga ttgcctggta
     5101 ccaaaggtga aaagggagac actggtgttg gcattgcagg agaagttggt ctccccggcc
     5161 ccccaggtcc tcaaggtcct ccaggatatg gcaagatggg tgcaactggg ccgatgggcc
     5221 agcaaggcat tcctggcatc cctggcgccc caggctccat gggcccaccg ggcaaggccg
     5281 gccactgtaa cccctctgac tgctttgggg ccatgccaat ggagcaggag tacccaccca
     5341 tgaaaaacat gaaggggcct tttggctgaa atcaccattt ccatcagatg aaggactcca
     5401 ttgggaacaa atggctaaaa cttataggat tctggatggg ttgtgaatgt tttgggtttt
     5461 taagtgctat taatattttt ttatcaataa acaaagaaac aaaa
//
LOCUS       XM_032647774            5458 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type XVI alpha 1 chain
            (COL16A1), transcript variant X9, mRNA.
ACCESSION   XM_032647774
VERSION     XM_032647774.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5458
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5458
                     /gene="COL16A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761660"
     CDS             539..5323
                     /gene="COL16A1"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform X9"
                     /protein_id="XP_032503665.1"
                     /db_xref="GeneID:116761660"
                     /translation="MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDL
                     STNVTGFGLIRRLNLMKISAIKKIRNPKGPLILRLGAVSVTQPVRRVFPRGLPSEFAL
                     VLTLLLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLEFRARGQDGDFVSCIFSV
                     PQLFDLRWHKLMLSVAERVASVHVDCTSVSSRPLGPWRPMQPVGHVFLGLDAEQGKPV
                     LFDLQQAHIYCDPDLVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVGAQLTGRISQEAESETKVHQETAVDECPPCVHGARESNVTIGPSG
                     PQRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
                     GSTGQKGQKGDKGDGGIKGLPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPAGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGEKGD
                     PCEVCPALPEGFQNFVGLPGKPGPKGEPGVPAPARQGLGAGGQKGDRGDPGIQGLKGE
                     KGESCLSCSSAIAAQHLGPSIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGE
                     AGPAGGLGPPGPVGPTGIKGEKGEPCESCRALSKHQDGDSHVVALPGPPGEKGEPGHP
                     GFGLPGKQGKAGEHGLKGQKGDAGNPGDPGTPGTMGRPGLSGEPGVRGPSGPKGEKGD
                     GCTACPSLQGALTNRAGPPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQG
                     EPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPA
                     GASVSGPPGPDGQQGQTGLPGARGMLGEKGAQGEKGEPGECSCPSRGDPIFSGMPGPP
                     GIPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHVLKSICGDCVQRQTAHP
                     AALLESGEKGDQGIPGVPGLDSCARCFTERERPRAEEARGDNGEGDAGCAGSPGLPGA
                     PGLPGQRGEEGPPGMRGSPGPPGPIGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPP
                     GLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNLGEKGDQGFQG
                     QPGFPGPLGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGL
                     DGLDGKDGKPGVRGDPGPAGPPGLMGPPGFKGKPGHPGLPGLKGDCGKPGPPGSSGRP
                     GAEGEPGAMGPQGRPGPPGHVGPPGSPGQPGPAGISAVGPKGDRGSTGERGLSGLPGQ
                     PGPPGHPGPPGEPGADGEAGKEGPPGKQGIYGPPGPKGDPGPSGQKGQAGEKGRAGMP
                     GGPGKSGSMGPSGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQE
                     IIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGPPGRPGAPGSPGLPGQIGREGR
                     QGLPGLRGLPGTKGEKGDTGVGIAGEVGLPGPPGPQGPPGYGKMGATGPMGQQGIPGI
                     PGAPGSMGPPGKAGHCNPSDCFGAMPMEQEYPPMKNMKGPFG"
     misc_feature    686..1231
                     /gene="COL16A1"
                     /note="Thrombospondin N-terminal -like domains; Region:
                     TSPN; smart00210"
                     /db_xref="CDD:214560"
     misc_feature    <1529..>2242
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <1832..>2743
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <2504..>3220
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <3710..>4345
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4028..>4759
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <4439..>5248
                     /gene="COL16A1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 cggactcccc gcccacccgc ctaccgccag agccccttgc agggcaactc cgggcacgca
       61 gggtcccgcc ttgctcgctc gcttacctgg cgcggggcaa gtgggaggga tgggcttggg
      121 agcgccgcca ggccaggagt gggccttgcg tcctgccgcc tctgccaccg ctggagaccc
      181 ctcccggtcc tccctccctc ctcctgcctg gcgggcgggt ccagctgtgt tccattagcg
      241 gccctggcaa gtccccagcc ccctggagcc tccccctctt cccccacccg gagtggccgg
      301 cagtccccgg caggcgagcg ggcatgcgag cggggcagca ttcagcccca gaagctcagg
      361 acaggggaaa ctggggaccc gaggccggcc agaagtaatc gaggaccttc cagcgggtct
      421 gaagaaccca ggccctgctt cccgcggttc gctgcgttgg gctgcctgga ttacacagtg
      481 aggtggtggg gatccccagc cacggtgctg tggctgcggc cgacttcttt ggaccaggat
      541 gtgggcatct tgggctcctg gcttgtggct gctcagtctc tgtgttatct gcagccatga
      601 ggcagataca ggggagcggt gcccaccttc acagcaagaa ggactcaagt tggaacacag
      661 aagcgactta tcgaccaacg tgactggctt cggtctcatc cgccgactca acctcatgaa
      721 gatatctgcc attaagaaga tccgaaaccc caagggacct ctcatcctgc gactgggagc
      781 ggtctcagtc acccagcccg tgcgacgtgt attccctcgg ggcctcccca gtgagtttgc
      841 cctggtgctg acactactgc tgaagaaaca cacccaccag aatacgtggt atttgtttca
      901 agtgaccgat ggaaatgggt acccgcagat ttccctggaa gtcaacagcc aagagcggag
      961 cctggagttc cgggcccggg gccaagatgg cgactttgtg tcctgcatct tctcagtgcc
     1021 ccagctcttt gacctgcgtt ggcacaagct gatgctgagc gtggctgaac gcgtagcctc
     1081 tgtgcacgtg gactgcacat cagtctcctc ccggcctctg gggccctggc gacccatgca
     1141 gcctgtgggc catgtttttc tgggcttaga tgctgagcag ggcaaacctg tcttgtttga
     1201 ccttcagcag gcacacatct actgtgaccc ggatcttgtg ctggaggagg gctgctgtga
     1261 gattttgccg ggagggtgtc ccccagagac ctccaaggcc cgccgggaca cgcagagcaa
     1321 tgagctcatc gagatcaatc cacagactga gggcaaggtc tacacccgct gcttctgcct
     1381 ggaggagccg caaaacagca aggtgggcgc ccagctgacg ggaagaatca gccaggaggc
     1441 agagagcgaa acaaaggtcc accaggagac agcagtggat gagtgcccac cctgtgtcca
     1501 tggtgcccgg gagagcaatg tcacaattgg tccctctggc ccccagagag ggaaaggtga
     1561 gcagggcctg cctggtccat caggacccaa gggagagaag ggagcccggg gcaatgactg
     1621 tgttcgaatc tccccggatg ccccgcttca gtgtgcagaa ggcccaaagg gagagaaggg
     1681 ggagtcggga gccttgggac cctcaggact ccctggctcc acaggccaga agggccagaa
     1741 aggcgacaag ggagacggag gcatcaaggg cttgccagga aagccaggcc gagatggccg
     1801 gccaggagag atctgtgtca tggggcccaa agggcagaag ggagaccctg gctttgttgg
     1861 gcctgagggg ctggcgggag agcctgggcc ccctggcctc cctgggcccg ctgggatagg
     1921 acttcctggg accccggggg acccaggtgg ccctccaggc cccaagggag acaagggcag
     1981 ctctggagtg ccgggaaagg aaggtcctgg tgggaaacct gggaagccag gggttccagg
     2041 gctgaaggga gagaagggtg acccctgcga agtgtgccca gcgctgcctg aagggttcca
     2101 gaactttgtg gggctccctg gaaagccagg gcccaaggga gaaccgggtg ttcctgcacc
     2161 agccaggcag ggcctgggag ctggtggaca aaagggtgat cggggtgacc ctggcatcca
     2221 aggcctcaaa ggagaaaagg gggagtcctg cttgtcctgc agctcagcca tagcagccca
     2281 acatcttggg ccctctatag ggcccaaagg agatgtgggc cctcctggcc tcggtttgcc
     2341 tggccttccg gggaaagttg gggctccagg gccaacaggg ctgaaaggag agaagggtaa
     2401 tttcggggag gcagggccag ccggcggtct ggggcctcca gggccagtgg gacccacagg
     2461 catcaagggg gagaaggggg agccttgtga gtcatgcagg gccctgtcca agcaccagga
     2521 tggggacagc cacgtggtgg ccttgcctgg gcctcccgga gagaaggggg agcctgggca
     2581 tccaggcttt ggcctgccag gaaaacaggg caaagctgga gagcatggat tgaagggaca
     2641 gaagggcgat gctgggaatc ccggagatcc tggaacaccg ggcaccatgg ggcggccggg
     2701 actgtcggga gagcctgggg ttcggggccc ttcagggcca aaaggagaaa agggtgatgg
     2761 ctgcactgcc tgccccagcc tgcagggggc gttgaccaac agggcaggac cgcctgggaa
     2821 gccaggcctg aagggagatc cggggcctga aggcgtgggc aggcctggta aaccgggcca
     2881 gcctggtcta ccaggagttc aaggaccccc aggactgaag ggcatacagg gagagccagg
     2941 gcctccagga gtgggagtcc aggggcccca gggggagcct ggagcccagg gtttgcctgg
     3001 cattcagggg cttctgggac ctcgggggcc acctggccct gctggagaga agggtgccaa
     3061 gggatctcca ggggtgaaag gagccactgg gcctgtggga cctgctggtg ccagtgtctc
     3121 tgggcctccg gggcctgatg ggcagcaagg acagactgga cttccaggag ccagagggat
     3181 gctgggtgaa aagggagctc agggagaaaa gggtgagcca ggggagtgct cctgcccctc
     3241 ccgaggggac cccatcttct ctggcatgcc gggtcctccg ggtattcccg gaccaccagg
     3301 cccccctgga atgcctgggc ttcagggagt gcctgggaac aacggtttgc caggacagcc
     3361 tgggctgact gcagagctgg gatccttgcc cattgaacag catgtcctta agagcatctg
     3421 cggggactgt gtccagaggc agacggccca cccggcggcc ctcctggaaa gtggagagaa
     3481 gggagaccag ggcatccccg gcgtgccagg ccttgacagc tgcgcccggt gcttcacaga
     3541 gcgggagcgg ccgagggctg aggaggcccg gggagataac ggcgagggag atgcgggctg
     3601 tgcagggagc cccggcctgc ccggtgctcc aggactgccc ggccagagag gagaagaggg
     3661 tccgcccggc atgaggggct ccccgggtcc tccaggccct attggtcttc aaggagagcg
     3721 aggcctcagg ggcctgacag gagagaaggg ggaaccgggt cctccagggc aacctggcta
     3781 cccaggtgcc atgggccccc cgggactgcc tggcatcaag ggggagcgcg gctacgcggg
     3841 ttccccggga gagaagggag aatcgggccc accaggatct gaaggcctcc caggtccccc
     3901 aggcccagca ggtccccgag gagagcgagg accccaaggg aacttgggtg agaaaggtga
     3961 ccagggattt caaggccagc cgggctttcc aggcccactg ggtccccctg gattcccagg
     4021 caaagctgga gcacctggcc cacctggccc ccaagcggag aagggcagtg aagggattcg
     4081 aggtccatca ggcctgcctg gtccccctgg accaccagga tctcccggga ttcagggccc
     4141 tgccggtctg gatggtctgg atgggaagga cggcaagcct ggcgtgaggg gggaccctgg
     4201 tcctgctggc ccccccggac tcatgggacc cccgggcttc aagggaaaac cgggccatcc
     4261 cggcctccca ggactgaagg gtgactgtgg aaagcctggt cccccgggca gcagtggccg
     4321 ccccggagca gagggtgagc ctggtgccat gggaccccag ggaagacccg gcccccctgg
     4381 ccacgttggg cctccggggt ctccaggcca gccaggccca gctggaatct ctgcagtggg
     4441 cccaaaagga gaccgaggat ccactggaga aaggggcctt tcaggtcttc cgggccagcc
     4501 tggtccccct ggacaccctg gccccccggg tgaacctggt gcagatggtg aagctggcaa
     4561 agagggaccc cctggaaaac agggaatcta cggaccccct ggtccaaagg gtgacccggg
     4621 accttcaggg cagaagggcc aggcagggga gaagggaaga gctggcatgc ctggcgggcc
     4681 tggcaagagt ggctccatgg gaccttctgg gccgccgggt cctgcaggag agagaggcca
     4741 ccctggatct ccaggacctg cggggagccc tggtctgccc ggggtgcctg gctccatggg
     4801 agacatggtg aattatgatg aaatcaagag gttcatcaga caagagatca ttaaaatgtt
     4861 tgacgagagg atggcttact acacctccag gatgcagttt cccatggaga tggcagcagc
     4921 tccaggacga ccagggcccc cagggaagga cggtcccccg ggccggccag gtgccccggg
     4981 atcacctggg ctccctggtc agattggcag agaaggtcgg cagggcttgc ccgggttgag
     5041 aggattgcct ggtaccaaag gtgaaaaggg agacactggt gttggcattg caggagaagt
     5101 tggtctcccc ggccccccag gtcctcaagg tcctccagga tatggcaaga tgggtgcaac
     5161 tgggccgatg ggccagcaag gcattcctgg catccctggc gccccaggct ccatgggccc
     5221 accgggcaag gccggccact gtaacccctc tgactgcttt ggggccatgc caatggagca
     5281 ggagtaccca cccatgaaaa acatgaaggg gccttttggc tgaaatcacc atttccatca
     5341 gatgaaggac tccattggga acaaatggct aaaacttata ggattctgga tgggttgtga
     5401 atgttttggg tttttaagtg ctattaatat ttttttatca ataaacaaag aaacaaaa
//
LOCUS       XR_004352078             746 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761682
            (LOC116761682), ncRNA.
ACCESSION   XR_004352078
VERSION     XR_004352078.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..746
                     /gene="LOC116761682"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116761682"
     ncRNA           1..746
                     /ncRNA_class="lncRNA"
                     /gene="LOC116761682"
                     /product="uncharacterized LOC116761682"
                     /db_xref="GeneID:116761682"
ORIGIN      
        1 cttaatctgt ctgagcggaa agaggtggga gactttaatt gcaaatgaag attaatgcaa
       61 cgtgaggtcg gctggatgag ggtaacagtc caaatagcag aatgtcactt tgcccgagta
      121 gttccccgta cgacgacctt ccagttactg cttggcttgc tggcgcgagc agcgagcctc
      181 ggaggcgcgg ctcgtggacc taacaagata aatctctgca tagcctgtta attgcttcct
      241 tgaaatcttt tttctttttc attaaaggtt tagctttgaa tttaaatgac cctgactgct
      301 tccccaaaat ttggacgaaa atatcttttc cttctcagcg gcagtggttc tgtgcactgg
      361 tctggagtca cttttcatga ggaacgttga cgaacttatg aaataagggt tgaaaaatat
      421 tcacaaccgc aggtgctttg ttaactgatc agattttaac aaaagtctta agcagtgctt
      481 ctcaactggg agaagttcca agagaggttg gccaaaaata ttttaaatcc taaaacacaa
      541 ttttaagctt tgcttttctt taaaatgtat acaaaataat gtgcaaatat gtataatata
      601 tgttttggat ctggtgttaa tatttaatcc ctgctttcta gagctgtgct gcctttaaat
      661 gtgcctacat tgagatgtac tgtaagtgta aaatacacac cagatttcaa aagtatcata
      721 tgaaataaag aatatagcat gtctca
//
LOCUS       XM_032647798            6684 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus aspartyl-tRNA synthetase 2, mitochondrial
            (DARS2), mRNA.
ACCESSION   XM_032647798
VERSION     XM_032647798.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6684
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6684
                     /gene="DARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761686"
     CDS             647..2605
                     /gene="DARS2"
                     /codon_start=1
                     /product="aspartate--tRNA ligase, mitochondrial"
                     /protein_id="XP_032503689.1"
                     /db_xref="GeneID:116761686"
                     /translation="MFCSLSRLYRGLSRPTRRTTQLIWGSFSRSLVLSSQRRIPELSS
                     FVARTNTCGELRSSHLGQEVTLCGWIQYRRQNIFLVLRDFHGLVQVIIPQDESAASVK
                     KILCEAPMESVVQVSGTVISRPPGQENPKMPTGEIEIKVKTAKLLNSCKKLPFEIKDF
                     VKKTEALRLRYRYLDLRGVQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTP
                     GGAKEFVIPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEF
                     TQIDIEMSFVEQTGIQSLIEGLLQYSWPSDRDPVVVPFPSMTFAEALASYGTDKPDTR
                     FGMKIVDISDMFRNTEVGFLQDALSKPQGTIKAICIPEGEKYLKRKDIESIRKFAADH
                     FNQEVLPIFLKTNNNWNSPVAKFIMEEQGLGLIRLLETQEEDVVLLTAGEHKKACSLL
                     GKLRLECADLLEARGVVLRDPALFSFLWVVDFPLFFPKEENPEELETAHHPFTAPHPS
                     DIHHLYTEPQKVRSQHYDLVLNGNEIGGGSIRIHDAELQHYILATVLKEDVKLLSHLL
                     QALDYGAPPHGGIAIGLDRLMCLVTGAPSIRDVIAFPKSFQGHDLMSNAPDSIPPEEL
                     KPYHIQVSWPTDSETKKSSLNHPCHPES"
     misc_feature    788..2548
                     /gene="DARS2"
                     /note="Aspartyl-tRNA synthetase [Translation, ribosomal
                     structure and biogenesis]; Region: AspS; COG0173"
                     /db_xref="CDD:439943"
ORIGIN      
        1 ggcattccct ctgttctgat tggttgattc cctccaccgt aatcttggct gttcgtgggg
       61 tgggttaagg acagcttggc tcccagcggc gatctgtatg tggtttcggg ccctagaaac
      121 attttggatt tgctttcatt cctccttctg aagacccgag gtcggccacc aggtttggga
      181 gatttgaaac gcggggctga ttttcctccc tgttttccgg ttctgcccgc gggaaccttc
      241 gaggaagcgt ggaaggatgg gaagggcgtg cgcctgctga ccggccccgt gttgcctctg
      301 cgtggccgcg gtgttccgcc ttggctgctg tatgaaatcg tacgcttgtc acttcaggcc
      361 gaagctttgt ttgttaatag aagtgaaacg gatgcgttga gaggggccaa agactttaaa
      421 aggtccttcc cctacccaac ttccccaaag gccccaaaga ctgcagattt atctagtttg
      481 ccgacacgag ctcttgaatg ttcagcggac aagggcttaa atataagaga gtgggaactc
      541 ctaacatttt aagggatttg tgtgtatttc caaaactgac ttatgaccgc catccaacac
      601 ctgcagcgtg agattcctga gcgtctcgcc atcctgcggc tctaacatgt tctgttcgtt
      661 aagtcggctg tacaggggtt tatccagacc cactagaagg accacacagc tgatctgggg
      721 ttctttctcc cgaagtctgg tactgagttc acagaggaga attccagaac tcagtagttt
      781 tgttgcccgg accaacacat gtggagagtt gcgttcttct cacttaggcc aagaagtcac
      841 cttgtgtgga tggattcagt accgaaggca aaacatcttc ctggtcctaa gagatttcca
      901 tgggcttgtt caagttatca ttcctcagga tgagtcggct gcttctgtga agaagatttt
      961 atgtgaagcc cccatggaat ctgtggtgca agtgtctggc acagtaattt cccgacctcc
     1021 aggacaagag aatccaaaaa tgccaacagg tgagattgaa atcaaagtta aaacagctaa
     1081 acttctgaat tcctgcaaga agctgccctt tgaaattaag gactttgtga agaaaacaga
     1141 ggctcttcgt ttgcggtatc gctacttaga tttgcgtggt gtccaaatgc agtacaacct
     1201 gcgactgagg tcccagatgg tcatgaaaat gcgggaatat ctctgtaatc tacatgggtt
     1261 tgtggatata gaaacaccaa cattatttaa aaggactcca gggggtgcaa aagagtttgt
     1321 aataccatcc agggaacctg gaaagtttta ttctctccct cagagtcctc agcagtttaa
     1381 gcagcttctg atggttggtg gtttagacag atattttcag gttgcccgat gttatcgaga
     1441 tgaaggatca agaccagaca gacagcccga atttactcag attgacatag agatgtcctt
     1501 tgtagaacag actggcatcc agagtctaat tgagggtttg ctccagtatt catggcccag
     1561 tgacagagat cctgtggtgg ttccttttcc ttctatgact tttgctgagg cgttggccag
     1621 ctatggaact gataaacctg acactcgctt tgggatgaag attgtagata tcagtgatat
     1681 gttcagaaac acagaggttg gatttcttca agatgcgctt agtaaacccc aaggaaccat
     1741 caaagccata tgtatccctg aaggagaaaa atacttaaaa aggaaagaca ttgagtccat
     1801 tagaaaattt gcagctgacc attttaatca ggaagtctta cctatattct tgaaaaccaa
     1861 taacaactgg aattctccag ttgctaagtt cataatggag gagcaaggct tgggactaat
     1921 cagactgttg gagacccaag aggaggatgt ggtcctgcta actgccggag agcataagaa
     1981 agcatgctct ttgttgggaa aattacgact ggagtgtgct gaccttctag aagcaagagg
     2041 agtggtgctt cgtgacccag ctctgttctc tttcctttgg gttgtggatt tccccctctt
     2101 ctttcccaag gaggaaaatc ccgaagagct ggagacagcc catcacccat ttactgctcc
     2161 ccaccccagt gacatccacc atctttacac tgagccccaa aaggtccgta gccaacacta
     2221 tgacttggtt ttaaatggca atgagatagg aggtggttct atccgaattc atgatgcaga
     2281 gctacagcat tacatcctgg caacagtact aaaggaagac gtgaaattgc tctcccatct
     2341 gctccaggct ttagattatg gggcgccccc tcatggagga attgccatag ggttagacag
     2401 actgatgtgc cttgtcactg gagcgccaag catcagagat gtcatagcct tccccaaatc
     2461 tttccagggg catgacctta tgagcaatgc cccagattct atcccgcctg aggaactgaa
     2521 gccctatcat atccaggtct cctggccaac agactcagaa acaaaaaaga gttcattgaa
     2581 tcatccatgc catccagaaa gttgagcttt tgagttttgt cctctttgct tccccaaggc
     2641 taaaatcaga tctggagttc agccacagat ctgacttcaa gtttttaaat ggaaggaatc
     2701 caggcaacat tcttcacctc aatgaagaaa cagacaaaag gtatccaatt ttaacgagag
     2761 catgcattat taggattatt ttatttggga cttttttgaa gtttcttttt acttggagag
     2821 gtgtgaaaca tggctttttg acagagtaac gtaatggcat agtgttttct aatcatgttt
     2881 ttcatacccc gatagtagat tgttctctta ggacagagct aatcaaacca tatgtgaaat
     2941 gtgggaagat tcttgcccct ttagactggt ccgttgatgg aggggtcagt tcaaccagcc
     3001 tcatcaagag aatcctataa aggaagctgg ataatgacat ttaagctatc aacataatat
     3061 agtgagaagc aacatgatat aaagtaaaaa atcactgaaa taaaagtcac aaaatcttaa
     3121 tcagtgcttt accttgcaag ttgtataaac ctctcttagc gtcccttcct gcatgtgtga
     3181 aatgtaaaca gtacttgccc tggctccctc actggcctct tcttgccaga atcctaggag
     3241 ataatatatg tggaagatag tgtgagtaaa aatgctttga aaaactttaa agcattactt
     3301 aaatgtaaga tgatgatatt atccatctgt agacagtata cagatatatc tatgtatttt
     3361 atagtttaag gttaaacaaa actgacatct gtggtaaaag gaaaacagta atttcattaa
     3421 tcagtattct gcttgtattt ctattttttt aaataatcac taatccctga ataacacttt
     3481 ccctcaatta taagtgactg aaaatattaa ttgaccttaa accaacctca aatgtagaaa
     3541 agtgaacact gaaactcatt gtgattttct tatacgttct gttgacacaa ataaaggctt
     3601 ataattaatt agtaattata aaatgggaat aaggccttga ttaatgacat tgttcttttc
     3661 tactttatct tcacttttgc cttgacattc ttttgattta caatttacac caaatatcag
     3721 tcttatattc cagcctattt ttctcagtgc tgtaagcagt ctgatactac aatctttctg
     3781 tttgaaaata aaatcagctt tgcttccagg tctaatttgt tatgctcaat aggctgtgaa
     3841 gagtgtgacc ttcactgatg ccattaaggg gagcttttcc caaaagtttg tcctttaacc
     3901 cagtctctcc ccatttgtgg atgtactctg gagccagaaa attcttgctg gcagagttct
     3961 tatgatgaga aaggcatcca actctgccta ccctttctca gtggagggaa tttctagaga
     4021 tgccctttat taggtaagaa aatgcaactt ttcattcatt taccccacat ctgcattacc
     4081 tagtttctaa atataataaa tttactatta actgtttaga acctaattct gaccaaaata
     4141 ttgtctttct atcctggaaa tgagagttac agaagatacc caaaatccag agactatttt
     4201 ctaggctaca gacaccaaag gccccaagtc cccagatgtc atacaatctc gtgttggcat
     4261 cacagagaca tagtcacttt gggcatcact cagcttttct tcagtcctgc ctgtcaggaa
     4321 aaagaaaagc ttattctgaa atccagggaa atgtcactat ttattctttt ttttggccac
     4381 accacgcagc ttgcgggatc ttagttccct gaccagggat tgaacccagg ccctcagaag
     4441 taaaagcgtg gagtcctaac cactggactg ccagggaatt cccattaatt aaatattttc
     4501 tcaaaaataa agaagctcgt tactgataaa gttggaaaca acacaaccag agttttggaa
     4561 cacacaaact aattgtaaac tgtaagccag gtttcagttc caagtccaat ctccccagcc
     4621 tcctagggaa tttagattta ttctatgttg caagttttaa aaacaaggta agcaactgcc
     4681 agctacaata tcgatagtta ttactggctt caagagagct ttgtcttatg agcaatttct
     4741 ccttgttggg aagagatgtg ttagatgatg agtgtgacgt tttatgctcg tgggctttgg
     4801 cttttatgtc attttatgct catgggcttt ggcggaataa aacaatgcat ctatacagct
     4861 gcactgtctt ttcccagagt tcccctctct gaagaaccag aactgtgctg tgacactgat
     4921 cacattcctt gctgctgatt ttttgttaag cctaactcat cctaaagatg ctgccttaag
     4981 gatacttttt tcttgtttca tggaaagtga gttatttcat gacatgagaa ataaccagta
     5041 cacaataaaa atattagatg ggatacctat ataataattg catatgtaag gcatacatta
     5101 agtgcacttc taagtcagtc ttctgtgttt aagacgatgg acttagtaga aagaacttga
     5161 gttggacata actggattta attcctggct ttaacactct ctagttatgc aaccttggcc
     5221 cagtcattta acctctttag gctcctgtat ctttacctag aatagcagtt ctcaaacatt
     5281 ttggtctcag gactacttac actctaaaaa ttattgagga tcccaaagag ttctatatag
     5341 ctcttttatt gtaggaggaa ttaagattta agattaagat ttaacccatt acatgctagc
     5401 aaaaatagta atttttattt ttaaattaat tattttccca aacaaaaatt agtgagaaga
     5461 gtgacactgt ttctgcagat ctttttgatt tctggtttaa caaaagatac tggattctca
     5521 tatctgattc tgcattccat ctgttgtgat atgttgtttt ggttgaaata gctgaagaaa
     5581 atttggtctt acataaattt gaagttagaa gagcgaggag tatttcaata gccttctctg
     5641 aaaattatgg atattctttg atactacacc aaaacttgac aagtttctta aaggttagtt
     5701 gcaatgtgta atctgcaatc atattggtaa atttttctaa aatccattgg tctgtcttat
     5761 attttgaata caactgtgtt atgcatggtt ttgtaacact gcacatggat catttgaaaa
     5821 atattggatc actgaattat gcagatcgtc caggtgttga caaatttcat taaacaatat
     5881 ctaaaaaatc acattgatta acatcatgac tgatctcatc ctaagtcttt aagtatggag
     5941 gtataagtgc acagtgacag atacaagctt tccaaaattg taattttcat ttgaaagctt
     6001 gaattttatc tttgacaact aataccatca gattttttcc caaactcatt tgttttttga
     6061 gaaaatatct gccagtatct gtggcctggg ctttggtctc tctccagttc caaggaagag
     6121 aggctgaggc tctggcgcat ctctgccttc ccttctgcct gagtgggaga ggccaggtgg
     6181 ccctggtggc tggagggggc ctgctgcata agaatgtgta ttctcttcac caggataggg
     6241 agactgttca accaccagga gcacatactt atcattgttg gactgcataa tgcagagaga
     6301 actaccatcc tttaccagtt ttctgtgaat gaagttgtac atgcatccct tacaatagga
     6361 agcaatgtag aagaaatagt gattaataat acacatttca taatgtggga tactggtggc
     6421 caagagtctc ttcgttcttc ctggaacact tcttacacta acagagtttg taataactgt
     6481 tgtggacagt acagagaaag gattgctgta actgaggaac tctataaatt gttagcccat
     6541 gaagacctaa ggaaagctgc attgctgatt tttgctaatg aacaagatgt taaagaatgc
     6601 atggctatag tagaaatctc ccagtttttg aaaataattt ctgatatata ttaaagatca
     6661 tttgtggcat atacaggtat tctg
//
LOCUS       XM_032647813            1769 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 37
            (ZBTB37), transcript variant X1, mRNA.
ACCESSION   XM_032647813
VERSION     XM_032647813.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1769
                     /gene="ZBTB37"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761690"
     CDS             166..1683
                     /gene="ZBTB37"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 37
                     isoform X1"
                     /protein_id="XP_032503704.1"
                     /db_xref="GeneID:116761690"
                     /translation="MTMEKSGNIQLEIPDFSNSVLSHLNQLRMQGRLCDIVVNVQGQA
                     FRAHKVVLAASSPYFRDHMSLNEMSTVSISVIKNPTVFEQLLSFCYTGRICLQLADII
                     SYLTAASFLQMQHIIDKCTQILEGIHFKINVAEVEAELSQTRTKHPEGPPESHRVTPN
                     LNRSLSPRHNTPKGNRRGQVSAVLDIRELSPPEESTSPQIIEQSSDVESREPILRINR
                     AGQWYVETGVADRGARSDDEVRVLGAVHIKTENLEEWLGPENQPSGEDGSSAEEVTAM
                     VIDTTGHGSVGQENYMLGSSGAKVARPTSSEIDRFSPSGSVVPLTERHRARSESPGRM
                     DEPKQPSSQVEESAMMGVSGYVEYLREQEVSERWFRYNPRLTCIYCAKSFNQKGSLDR
                     HMRLHMGITPFVCRMCGKKYTRKDQLEYHIRKHTGNKPFHCHVCGKSFPFQAILNQHF
                     RKNHPGCIPLEGPHSISPETTVTSRGQAEEESPSQEETVASGETAQGSVSTTGPD"
     misc_feature    190..558
                     /gene="ZBTB37"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 37 (ZBTB37); Region:
                     BTB_POZ_ZBTB37; cd18222"
                     /db_xref="CDD:349531"
     misc_feature    1294..1356
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1309..1311,1315..1317,1321..1323,1327..1332,
                     1339..1344,1351..1353,1393..1395,1399..1401,1411..1416,
                     1423..1428,1435..1437,1477..1479,1483..1485,1489..1491,
                     1495..1500,1507..1512)
                     /gene="ZBTB37"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1330..1407
                     /gene="ZBTB37"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1372..1440
                     /gene="ZBTB37"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1378..1440
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1417..1485
                     /gene="ZBTB37"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1462..1518
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 tggggaattg ccgggaagag caaacaaaaa aggcgctggt gtaggctcca aaataaacat
       61 ctgaattcat gatggcatcg acagaggctc ttattggatt aaaagtttca aaacaaacaa
      121 aaacgctttg gaaaaagggt tgaatgcctg cctacaccct caggcatgac catggagaag
      181 agtgggaaca tacaactgga gatccctgac ttcagcaact ctgtcctgag ccatctaaac
      241 cagctgcgca tgcagggccg tctctgtgac atcgtggtca acgtgcaagg acaagctttt
      301 cgggctcaca aagtggtact ggctgccagc tccccctatt tccgagatca catgtccttg
      361 aatgagatga gtactgtctc catttcagtc ataaagaacc ctactgtttt tgaacagctc
      421 ctttctttct gttatacggg gcggatatgc ctgcaactgg cagatatcat cagctacctg
      481 acagctgcca gttttctgca gatgcagcat attatagaca aatgtacaca gatcctggag
      541 ggcattcatt tcaaaatcaa tgtggctgag gttgaagctg aattaagtca aacaaggaca
      601 aagcacccag agggacctcc agagtctcac agagttacac caaatctgaa ccgctccctt
      661 agtccccgac ataatacccc aaagggaaac cggcgaggtc aggttagtgc tgtgctggat
      721 atcagggagc tcagtcctcc tgaggagtcc accagccctc agataattga acagagttct
      781 gatgtagaga gccgggagcc cattcttcgg atcaaccgag caggacagtg gtacgtggag
      841 acaggagtag cagaccgagg ggcccggagt gatgatgaag ttagagttct tggagcagta
      901 cacatcaaaa ctgaaaatct agaagagtgg cttgggcctg agaatcagcc ttccggagaa
      961 gatgggagta gtgcagagga agtcacagcc atggtgattg acaccacagg ccatggttct
     1021 gtaggacagg aaaattacat gttaggatct tcaggagcca aggtggctag gccaacaagc
     1081 agtgaaattg acagatttag cccctccggc agtgttgttc ccttgacgga gagacacaga
     1141 gccagaagtg agtctcctgg gagaatggat gagcctaagc aacccagctc ccaggtagaa
     1201 gagtcagcaa tgatgggagt aagtggctat gtggagtatc tccgagagca ggaagtatct
     1261 gagcggtggt tccggtataa cccccgtctc acctgtatct actgcgccaa atctttcaac
     1321 cagaagggga gcctggaccg ccacatgcgc ctgcacatgg ggattacacc attcgtctgc
     1381 cgcatgtgtg gcaagaaata tacccggaaa gatcagctgg agtatcacat ccgcaagcac
     1441 acaggcaaca agccctttca ctgtcacgtt tgtggcaaaa gtttcccctt ccaggccatc
     1501 ttgaatcagc actttcgcaa aaaccaccct ggctgtatac ccctggaggg gcctcatagc
     1561 atctcccctg aaacaactgt cacatctcgg ggacaagccg aggaagagtc accttcacaa
     1621 gaagagacag ttgcttctgg ggaaactgcc cagggctctg tgtccactac tgggccagat
     1681 tgaaacagcg aggaggtggg gcagaccctc ttcccctttg ggccgtaagt aaccagcatc
     1741 acggccatgg gctggtactt agattcaca
//
LOCUS       XM_032647822           18649 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 37
            (ZBTB37), transcript variant X2, mRNA.
ACCESSION   XM_032647822
VERSION     XM_032647822.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18649
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..18649
                     /gene="ZBTB37"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761690"
     CDS             458..1975
                     /gene="ZBTB37"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 37
                     isoform X1"
                     /protein_id="XP_032503713.1"
                     /db_xref="GeneID:116761690"
                     /translation="MTMEKSGNIQLEIPDFSNSVLSHLNQLRMQGRLCDIVVNVQGQA
                     FRAHKVVLAASSPYFRDHMSLNEMSTVSISVIKNPTVFEQLLSFCYTGRICLQLADII
                     SYLTAASFLQMQHIIDKCTQILEGIHFKINVAEVEAELSQTRTKHPEGPPESHRVTPN
                     LNRSLSPRHNTPKGNRRGQVSAVLDIRELSPPEESTSPQIIEQSSDVESREPILRINR
                     AGQWYVETGVADRGARSDDEVRVLGAVHIKTENLEEWLGPENQPSGEDGSSAEEVTAM
                     VIDTTGHGSVGQENYMLGSSGAKVARPTSSEIDRFSPSGSVVPLTERHRARSESPGRM
                     DEPKQPSSQVEESAMMGVSGYVEYLREQEVSERWFRYNPRLTCIYCAKSFNQKGSLDR
                     HMRLHMGITPFVCRMCGKKYTRKDQLEYHIRKHTGNKPFHCHVCGKSFPFQAILNQHF
                     RKNHPGCIPLEGPHSISPETTVTSRGQAEEESPSQEETVASGETAQGSVSTTGPD"
     misc_feature    482..850
                     /gene="ZBTB37"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 37 (ZBTB37); Region:
                     BTB_POZ_ZBTB37; cd18222"
                     /db_xref="CDD:349531"
     misc_feature    1586..1648
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1601..1603,1607..1609,1613..1615,1619..1624,
                     1631..1636,1643..1645,1685..1687,1691..1693,1703..1708,
                     1715..1720,1727..1729,1769..1771,1775..1777,1781..1783,
                     1787..1792,1799..1804)
                     /gene="ZBTB37"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1622..1699
                     /gene="ZBTB37"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1664..1732
                     /gene="ZBTB37"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1670..1732
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1709..1777
                     /gene="ZBTB37"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1754..1810
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gacacgaccg cccacgtgac gcagggctcc ccaccctcct acggactgag gaggagggga
       61 agagagggga gggggcgcga gggacggaaa gcgctgggga gggggaaggg gggcggtgta
      121 agggtgagcg atttccttcc ggcacgtcgc ccgctccggg ggagggggtg gggggtttca
      181 cttccgggac ggtgttccgg cccattccgg cccatttcca cccccggagc tctcacccct
      241 ccagtgccga cggtagagaa agaccttact ccaggggctt cctcctcact ggggaattgc
      301 cgggaagagc aaacaaaaaa ggcgctggtg taggctccaa aataaacatc tgaattcatg
      361 atggcatcga cagaggctct tattggatta aaagtttcaa aacaaacaaa aacgctttgg
      421 aaaaagcagg gttgaatgcc tgcctacacc ctcaggcatg accatggaga agagtgggaa
      481 catacaactg gagatccctg acttcagcaa ctctgtcctg agccatctaa accagctgcg
      541 catgcagggc cgtctctgtg acatcgtggt caacgtgcaa ggacaagctt ttcgggctca
      601 caaagtggta ctggctgcca gctcccccta tttccgagat cacatgtcct tgaatgagat
      661 gagtactgtc tccatttcag tcataaagaa ccctactgtt tttgaacagc tcctttcttt
      721 ctgttatacg gggcggatat gcctgcaact ggcagatatc atcagctacc tgacagctgc
      781 cagttttctg cagatgcagc atattataga caaatgtaca cagatcctgg agggcattca
      841 tttcaaaatc aatgtggctg aggttgaagc tgaattaagt caaacaagga caaagcaccc
      901 agagggacct ccagagtctc acagagttac accaaatctg aaccgctccc ttagtccccg
      961 acataatacc ccaaagggaa accggcgagg tcaggttagt gctgtgctgg atatcaggga
     1021 gctcagtcct cctgaggagt ccaccagccc tcagataatt gaacagagtt ctgatgtaga
     1081 gagccgggag cccattcttc ggatcaaccg agcaggacag tggtacgtgg agacaggagt
     1141 agcagaccga ggggcccgga gtgatgatga agttagagtt cttggagcag tacacatcaa
     1201 aactgaaaat ctagaagagt ggcttgggcc tgagaatcag ccttccggag aagatgggag
     1261 tagtgcagag gaagtcacag ccatggtgat tgacaccaca ggccatggtt ctgtaggaca
     1321 ggaaaattac atgttaggat cttcaggagc caaggtggct aggccaacaa gcagtgaaat
     1381 tgacagattt agcccctccg gcagtgttgt tcccttgacg gagagacaca gagccagaag
     1441 tgagtctcct gggagaatgg atgagcctaa gcaacccagc tcccaggtag aagagtcagc
     1501 aatgatggga gtaagtggct atgtggagta tctccgagag caggaagtat ctgagcggtg
     1561 gttccggtat aacccccgtc tcacctgtat ctactgcgcc aaatctttca accagaaggg
     1621 gagcctggac cgccacatgc gcctgcacat ggggattaca ccattcgtct gccgcatgtg
     1681 tggcaagaaa tatacccgga aagatcagct ggagtatcac atccgcaagc acacaggcaa
     1741 caagcccttt cactgtcacg tttgtggcaa aagtttcccc ttccaggcca tcttgaatca
     1801 gcactttcgc aaaaaccacc ctggctgtat acccctggag gggcctcata gcatctcccc
     1861 tgaaacaact gtcacatctc ggggacaagc cgaggaagag tcaccttcac aagaagagac
     1921 agttgcttct ggggaaactg cccagggctc tgtgtccact actgggccag attgaaacag
     1981 cgaggaggtg gggcagaccc tcttcccctt tgggccgtaa gtaaccagca tcacggccat
     2041 gggctggtac ttagattcac aaaatgccac aacaccagat cagaagatgt tagcaagatg
     2101 ttgtatcagc aacatacaca aaagcactag aggctcttcc cctctttctt cccacctcac
     2161 actttggaaa ataatcaagc aaatcaactt tctaattcag ggatcaacag ccttggtttg
     2221 ttaactttat aaaaaaaaaa aaattttttt aacaaaacaa tgataaatga tcatttatct
     2281 accagtcatg tttgaacact gtactttggt ccatatcacc ctggtggctg taattgccca
     2341 gatctgaaaa atgaagcagg agccttggtc atctgaacca gccagccaca agagagaagg
     2401 aagtaatcat gatggtgatg atgaggggga atttctcttc ttccttccct gccagaacat
     2461 gcagtttctt atctcaagaa ggggggaaaa aaaaaaaaag aatcccagtg gttctttttg
     2521 ttttgaaagg ttagattaat ctttgccctg acaaggcgtc cgatactttg cctggttgtt
     2581 tcatgtatgc agccatcttg gagcagtatt ctaatgggca gcatcacctg aagcacttta
     2641 ggcacctgga agtaaaatga gcagcaaagt gtttgcaatg tgtagttctg catttggggg
     2701 cctgggtgtt gtattgagga agcggagagc agggaaggaa gtgtttttgt tctgcaatta
     2761 tcgaacagca cagagccagc cgtactgcaa cttcctgatt ggtatttgta agccatagtg
     2821 cttatatatc ttcaggtgtt aggaaatggc tctagtccag atgaattaac gcgtaaggct
     2881 gactaccaaa gtttcatcca gcctcttcgg ctcctagctt cacataacag caatattatg
     2941 catcaaaaat gtcactttac agtgaaatga gcctggattg tatttttaaa tccacaggtc
     3001 tccatatttg ataactttta tatgacattt taaacacatt ttttcgcaat attgtggttg
     3061 tagaaattca acattatgct tcttactgca actacagttc catttccttc tacatatgtg
     3121 atagtttata ttttcagtcc aatagaagaa cctcactaaa tccatgtctt gcgtctgcaa
     3181 acttagtaat tcgtaaacca accatcagca aattgctgct gactccaaga gctttgcttt
     3241 ttcataatac actacagggc atttaccaga aaacatcatg cacaatcatg ttgcaataaa
     3301 ttgatcaagg gattgatttt gatcaggttt ggttacttaa tcattcctaa gatttttaaa
     3361 acttcaaggg acctttttgg taattctggg tatttctgag attcttaatc cagcactgag
     3421 agtcagaaag aatttaccaa acatgtagag ctttagatgc cctgtcttgc gtgcagagaa
     3481 tgaaggagga ttattaaggg atgcaggcaa gtagatgctt acaagttaca gtgcaaatag
     3541 aaaagagaaa aatctctagc ttctcttaat tgatcattaa ttttttacag agtatttaaa
     3601 tatgtagtgg tttaagaaat tgttttggtg caggggcata gatgattgta aaagagattt
     3661 gggagagggg ctgatcatgc ctgaactggt ggtgagccat ttgtgagaac gttagtagtg
     3721 tgctcccttc ctgagactgc ttgggtatgt gaaaaagtgg gtaggaaaga atggcgttgc
     3781 tttgataata ggaagttaga atgcaaaggg taattcttaa gcaatctgag acctgtacat
     3841 acatatacag ctgcaccata tcactaatga acggttattt tttcttctgg aaaaacaatg
     3901 catctttcaa taggaatgca acaatgctac catttgatta gagcctaccc ttaaacatta
     3961 tgttgaagcc gtattttgtc ttcagaagac atagactatg gcattctcct ctttagacgg
     4021 gcaacagcat gatagggtga agactgtcgc ctagggccgt cttagggacc aactattgct
     4081 ctgtggcata gaaaaagtag agttgaaatt agactgaaat ctttaaggaa acatttcagc
     4141 tggtaatcaa tgctttcagt ggacagattt tgccattact aaatagggag gtgagaggta
     4201 cagaatatgc tgctttagat ggagctttta agcctaccaa aaattgttaa gtccatccta
     4261 cttttcagaa gtattatgct ggaaagttct ttattgcttt gttagtttct tagatgttat
     4321 ttgagaaaat agagctattt aaactattac caaattgtaa aagtgaggtg cagtaatttc
     4381 tgtaaagaga aactttgcag catttgtcag tactccatcc agggttagca acaaacattt
     4441 taaatgaagt agggactgtc tgatagatgt ggaaatgcta tgagtgtttg atgggttccc
     4501 cctccctttt tattcactgc taataggttt ttgctgtatc tgtactgtga atagagtgct
     4561 tctcggtcgt ctaggaccac atcagcacaa tcgtgtttgc tggttctctc ctcttaactg
     4621 gcctagggca gagccgtgaa attcatgaaa attcaagcca gcctaacttt taaacaaatt
     4681 tacgtttctg aaagcagttt ctccatttta gttagaagag atattactct aaataactat
     4741 ccaagattct tatccaggtt cactgtgaca ttgtcctagt tcttagctaa catcactgta
     4801 gggtcatagg agttagtagt gttctatcta ccttaatgaa tagctatata ggtgtgtgca
     4861 cagaggatac ctctcttaag gatgtactaa atggacttta gctaatgctg aaaactcatt
     4921 accaaatttt aacttgcacg tgtcaccttg tgaagggaac agcattagca gtgagagcta
     4981 aatcatcatt aagtacttta atgccatgaa atagcaaaca ctgggactgt tttcatttat
     5041 tgagtagcac ttaatagcaa aggagctacc caatattctc agcaaaagaa gagagatgac
     5101 aatatattaa tctcctttca ttctaagagg taccttttat tctctctcag aactctgata
     5161 ccagtttaaa atatggcatt ggcatgaaca gtaatactgt acttaggcag aaggctcttt
     5221 ctaatgactt gttctccctt tactcagaac catatttacc tctgaactga gttgaatttt
     5281 actttatgtg agttgcagac tacccccaac ctatctgtta tactagaggg tcaaatctaa
     5341 tcttgaatgt gtaaaaataa attcgttcct gaaggataaa aattggaaaa gaagggagat
     5401 agcagttaag ggaagttttc ttgttacttt ttggggtttt ttttcaatgt ttccagttcc
     5461 ctctacatca ttgaaacagg gttttccaaa gatggcatga caatagaaat aaaccatttt
     5521 cctactaact tcatagttga aatcaggcct tggttggaag tggttttatg gaagagtgaa
     5581 atagtgaaca tcatccttaa tagctgaata gtctttagtc aagaaataac ttatgaaaag
     5641 ttttagctgt tacttaacac taattttgtt ttaactggta aaaatgatat tttatttgac
     5701 tggaagatct aatttaaaga aatgaaagca atgggtaatg gaaaggaaat taaattgaac
     5761 aaagataaaa gtcttctaag tcatagtgga aaggcattta atcaggaagg agttggaatc
     5821 ttggaagttt ttagtttttc agctgcaaca gatgtgggtt tttttctctt cctcaaatgt
     5881 tctccttatc tgtatactta ctcattcagt attttggttg ctgagattta gagaagggac
     5941 aactagccat taaaccgggt aaatccctta atttgagagg atgcccctta gcaaagtata
     6001 tctctaggat ttagtaatta gatcaaggtt cagcaaacca tagcctccag gccaaatcct
     6061 gaggtcacct gtactgtaaa gaaagtggta gtggaataaa tccacaccta ttccttttgg
     6121 tattgtttat ggctactttc tgcaatagtg gcaaagttga gtactttgac agagaccaca
     6181 tggcctgcaa agcttgaaaa caaaagtttg ccaagttcag aattagattt gaaacaatta
     6241 caccactgcc tctcaatttg tcactcttgc cattttgcct ttataataat agtttggttg
     6301 aggttttaaa ttcatactgc catatatgca tcagtttctt gaaagaggtt gccatctttt
     6361 tctagatcct tgtctcattt gtgctccttc ttgaatccca ttgctttaaa gcatttagag
     6421 taggccttat gatttgtcct tgccttaaag ctgcattaaa gtttaggatg gtaattacag
     6481 atttaagaaa gtaattttta aaaataattc ccacgtataa taatgtaggg ttaaatgaat
     6541 accatgttta cataaagtac tgtaagaaaa gtaatgtttt tataagtgtt ttgccatttc
     6601 tctaagttaa catgatgatg atggcaagaa tgaagttatt cccactagta ttaaaattta
     6661 atttctgtta tgaataagtg gtttgattct tatccaaagt actgtttttc tagattagaa
     6721 acctctaccc atttccttta ctataaatct tcatttcctc aagtaaactc actctgttcc
     6781 atgtggaata gtaaaaagcc aaaatcttcc tttttttttt tttttaagtc agtgttttaa
     6841 aacataatga aacatctgaa gatttaaagt tctttttaga cctaccttcc aatttctgtt
     6901 attgtttgta atgcttctaa atctgtaatg ggccattatg tatttgattt gtgaatgttc
     6961 attcttactg ttcaaatagc ttatttatgc cagatgtgga aaaaatggaa aatgttagga
     7021 tgataataaa cagaattcct tgcaagagga gaatataatt gctccccatt tggaaacaat
     7081 acatggactt ctggggtaag tgttctaggc catgctgata caatacagtg gatttgattc
     7141 ttactttgtt gtgagctcta ccaagacata cgaagtttgg atgagtgatc tagcagcata
     7201 tatggcacca cttcagtagg cattttattc ttaaagttgc cttttttcta agttggatat
     7261 tagtaggttt tatatgttac accctccaag taatagataa tcttcatcta gaaggttcca
     7321 gaatatttgc ttaggtgata tctgccttgt cttagagcac ttatagtaat agtgagttct
     7381 tgagattttg gagtgctgct tttctggtta atttgggatt ctgattaatc tggggtagag
     7441 gacttgtgaa cgaaatcgta tttaggtagc ccagtgaatc atctgcatcc accaccattt
     7501 gaggtcttgg taatagatgt catttaaatt cgaatctgtt gaaaacaatg gagtttgcca
     7561 agcattatga cttctttgat aattatcagt cttacgttgc tttgcctcct ttgcttttta
     7621 gtgtctgttt tcactcttat tcttaagtgg tgcttttccc agggccagtc tttttacttt
     7681 gcattaagta tgttttcttg ctcaggacaa gccaaggttg gatattttga gtactttcaa
     7741 acccgactta attacattcc aaaggatgta attgttgata ggaacagtga tatcaaaacc
     7801 tgcaagatat ctgtacagac tatccagctt tgttgtgtag gcagactatc ttttccctca
     7861 attgtaagga acagcaatga cttagaaggc aaatattacc tgaaatatac attatgttca
     7921 cagagcgtgc atatataaga taaataaata tcttacatct tctctattat ctgtataata
     7981 aatacctccc atagtaacgt aattaagaaa ggtccattag ctcaaatagt ggaagtttta
     8041 aaaacaaagc ttagttacaa aggcagagca gtttagggaa aaaaaaacac acttctaatg
     8101 cttgcttttt tcatgtctac tcagtaagtc ctgttaagga agctagaatt caccacccag
     8161 ttaagagaga gatttgttca gtatctcata tgaccaacaa cacaatttaa tatactgtga
     8221 attttagaat ctcaattaat ccataatgcc ggaagtcaaa gtatgtatct cataggaaaa
     8281 tgttccctgt tctatgaaat cacttatctt aaatggtagg tagcatacag gagaatctgt
     8341 tccattaagt aaatttttgt tccattaagt aatttttggt accagataat ctgcttggaa
     8401 tttgtataac aaaattgatt ttagacatag tttagatgtg gcttcctata cttgagagtc
     8461 ctaaacccac ttggttagag gctggtgtat acttttaaaa gcctgcactt ttcactacag
     8521 agataaaaga tcaaaaagaa ggggacagaa ttaaccatac taagtgcttt agagacataa
     8581 ttgcagtaaa ttctcaagat aatcctatga ggtagtaatg gtagtaacta aaaatagcag
     8641 actttaagtg tttactatga gttaggcaca gttctatgtg cctcaccgtt aactcatcta
     8701 atccttatga caatcccatt agggtagata gtgttattat cctcacttta gagagaaaga
     8761 aacggagaca cagagaggtt gacctaggca gtctttcact acacttgaca ttcttagtag
     8821 actatgttgc ctttaatagg tgtaattata ctacatttta tagatgagga aactgttgag
     8881 cccaagatta cacaatggat aaactgcaga gccaatattt acctatctga ttccaaagcc
     8941 caggctatct ccagtacatt gtgttaactc tgtttactta taagagttgg agtgaactag
     9001 aatatacaat agccagtaac agcactgctt ttagtgaact tttaattcag gaataagtga
     9061 ttggaagatt tcttcatgag ataaagcagt tgacctctga gcagatgttg aatgatgaat
     9121 attttctggg gatattgccc accaatttag aggagtcacc catttggtag ttctaattgt
     9181 gaatgagtga ttgagttact accaaggcaa aaattgaaag atagatagca ttccagttat
     9241 ctattgctgt gtaatgaact atcctaaacc ttagtgactt aaaacagcaa ctactttata
     9301 tatcgcatga tgttgtgaat cagaaattca ggaaaggctt gtctaggcaa tttcttgctc
     9361 cctgtggtaa cagctcaggt cacctggtag tattcagcag gtggctggac cagtcaggag
     9421 tgtccaagat gatctcacat tcctgacacc ttggtaggga gggctagaag aataggccca
     9481 gcaggcctcc tctccctctc tggagtctca gggactctct atctgatctc tccatcatag
     9541 tagtcagagt tatgaaatgg cagctcaggc ctccaagagg ctgggcagag gatgccagtc
     9601 ctcttcaagg ccaggcccag agctatcaca gagttatcac catacactat tggtcaaaga
     9661 ctggtcagcc cagattcaag gggagaggaa ataccttacc acttgatgga agatgtgtca
     9721 aggatttggg gccaacttta atctgttata ggtagcatga ggtttttttg atttgtctta
     9781 actcttgtgt gttcatttag gtcagttgtt tgtgccatag aaaccatttc ttatatctac
     9841 catgggtcag taaaggagct agaaggagaa tgagacaaat acctggaaca gatttcttta
     9901 gcttcccacc ccctgagttt catttatatt atagcaaaat ttccattttt tcttttgttc
     9961 caagttccaa attgtgagca tttgccgttt tttttttttt tttttcctgt gaagccacag
    10021 taactgtcta tgctaaacca gaaatactct agagggaata gaaagcttgc tgttacagac
    10081 cttgatttat tagagatgtc agctgtattt aatttacaaa taggcaagaa ctcctgtggt
    10141 atggaaaatt tatatggctg ctaaatctgt ttcaacagga gtttctattg agtggctaga
    10201 tggattatat tcttgagatg attgcaagtt ttgcctacat atcctacaca tctttactgc
    10261 caccacacca cctctggcac aaatttgtgc taggagaata ggttcattcc atttatatta
    10321 ccttccatat gggaaaatcc gttgcccagt tttatagttg ttaatctttt aaaattatca
    10381 gttgctatca gcttctgtta tatagaataa caaatcattg aatttttaca atttttggtt
    10441 agacttgtca aatttaggat gctttattta aattcctgct ggcttataaa tggacttttt
    10501 ttgccttcag aagaaataat ggcagagaat ggattctgct ctaaaaatga tcatccccaa
    10561 atgaatacac tttctaagag aagaaaggtt tggtattatc tatccattcc atgtatagtg
    10621 gtttcctaga gaattagttg tgagggcttc ttgctggtca tccccaatta tcatatagtg
    10681 aagagatctc tgttccccgg tcaggcctca ggaattacaa atacaggata taaaaggggt
    10741 actcagggct gaagacttaa tttaggactc tagaaaattc tgggaagaga aaagaaagac
    10801 ttcggcattt gtagttgaat aaccagggtt ggaatgtttg actcatttag gcatcaggat
    10861 taattagatt ttatcatata atgattgggg caaattttga tgaataaaaa taaaatagtc
    10921 ttaacatttt cttttttatc catatttcca ctctgctgta cctcaaagtc tgctctttgt
    10981 gacagagaag tctttgaaaa tatactccca gggaatgaaa aattggttct aggtactttt
    11041 gctagaacca tctttgccat agtcaacttt gctgcaagca ttttcacctt ataactaatt
    11101 cgctgtaagg caattttgcc ataaaagata aaaataaaaa ataaaagagg gacattaaaa
    11161 aggacataat gcagcatgaa aaatgaataa caaaatttaa aaaaaatttt attgcaaaat
    11221 acaaaatatt tgaatacctc taaaatgtgt gtagattcat ggcaagcctg cacaaataac
    11281 tgattttgtg tgttgtacct aagcacttgt cttccaggtc tttcattctt agtattttat
    11341 actttttttt ttttttttgc ttgttgattc atctcctcat tcagcattgt tctttttctt
    11401 tttgcttaaa tttcttcctt cattaagaga ggtatcagtt tccaaatacc aggatgcata
    11461 tttgtagcca agctttgtat tgcattgtga aagcctctgc actgttgttt gttcttggca
    11521 ttttgtcata tgtccattca tagactttcc aaagttctgt gggaaatgtg ggttcaactc
    11581 tgcacctttg aggcttttgg cctctttatc ctccagtgta gtgtttcaaa ataagaaacc
    11641 aactcttggg gcaaatcatc attatctgtc agctcagtaa aggcatcagt aatgttgcta
    11701 actgggagaa atgccggtcg aaaccaaact agcaaaccaa aaactcatcc agttatttta
    11761 tcttttgggg caaaaattgt cttatgacca attagttatg ctgtgaaaat gtttgcagca
    11821 aagatgctta tagtgaaaat actggacact tgaaaaatat ttgataatct atgaagatgc
    11881 cactcattca gtttcttaca gctctttggg ccctcctcta gattctctgt gactcttaaa
    11941 tttgaaatca tctggtggtt gcacgaaaac taagtatagt tgtttcttga acaatgtggg
    12001 agttagggtg ccgacctctg caagtggaaa atccccctat aacttatagt tggcctccgt
    12061 ttctgtggtt cctctgcatc cagggattca accaaccact gatggtgtag tactgtagta
    12121 tttactattg aaaaaaacct agctataaat ggacccatgc agttcaaacc catgtcggtc
    12181 aagggtcaac tgtactgtgg tctcaaattg aaaaagagaa caaagtcaga agaaagggaa
    12241 cctgcagact gacaaaatac ttattctttc ttttcagcat cacaagtcta aaccatttaa
    12301 taaccacatc ctgagaaatt ccttaaggtt tagatttctg cttttagcat atcttgtggc
    12361 agatgttttg acatttttga aggtgatcta ctgagtttcc tataaataga atcctaacta
    12421 cagtggttct taaagaacca ctgcaaaaac agaattacaa cacagggaac aaagcttaaa
    12481 atgtgtttcc tctggaagcc aagatgctaa atcaggagtc actacgtgtg gctggaatcc
    12541 acctctagaa tggctatcag ccagatagca aagatattta gaatttatat ggtatttgat
    12601 atttttacaa aaatgatttt aaatcatata acttgaagtt ttaaaaaatg agcctgtttt
    12661 ctttttggaa aagtgggcca ataaaaataa cactaatata attcaattgt atatgcatgt
    12721 gcattgaaca cagagtggta tactaaagat agttcatgca aataactttt gtgggaagtt
    12781 tggctatttt cttaatatct tttttcataa atgtatgttt ataaatatat ttactcattc
    12841 actatgactt tggtagcttt agaagcattt tgttagctgt atcattgatt ataaaaatca
    12901 aattcttggc atagtaggct atgagagctt ttagttgctt tgtttgtatt ttggctaaga
    12961 aaattgtttc ttgcactttc tatttataaa gatgttataa cactttgcac ccacttagtg
    13021 cagctgttct tcagcgacaa aagatgtagg cgttaaagtg aaatgtatgt ttagaagcct
    13081 ggcaaaagga gggatctcaa aagaacaaat ttggcttgca tctacctgag aaaagctgag
    13141 gataatataa aatttagatt gaaagtatct gttaggctag gtgtacagtt gctgcaagtt
    13201 gcaatatcat tgtgagttgc cagctatgtg tatgtgattt tatgtatgta tgtgagaaaa
    13261 aggtgtctga tgaaggcaga taagtcagtg tagaaaattc tacctcccat tgaagactga
    13321 gaatactcca agattgccct gtagcccctt aggcaggagg ctggattcct cagccaccat
    13381 ccaccccatt ctcttgtact cacttcagct cctctacctc tgagcacttg gctgaagata
    13441 gagtgtagct ttctgtagca agcaaaggaa agccagaccc aaaatataga gactgcagta
    13501 tctcacttct tgtcatgttc agatgtcaat gtttggtttc attacccaaa tcaaacagaa
    13561 cacttgggtt tagtgctttt atccactggc gtctatttgg caagagtagc ccgtggaagt
    13621 ggagtatttc tgttgttttt aaaggtgcac tcaactcctt tgaatgatgt gaaaattttg
    13681 tttgaatcct gaggggtttt tttttttttt ttaaattgcc atttgcagtc cattttgggg
    13741 gactggaata tcaatcatat tttcctgata atgagccttc tgccaatatc ttaacttgca
    13801 gttttgcatg cagttttttg gatgacctgt tttgctttta gacactccga agagagattt
    13861 ttctggtttt aatgccaata ctgttaaaat agtcaggatg gcctgttgtg ggtgccagga
    13921 aattcagttt tggaagtaaa atgccactag gcaggccacc taatctttaa atgcagttgt
    13981 agcactcaac tgatttgccg tttggggcac aagtacactg agccaagtca ggatacctac
    14041 cgtgtgaaca tttgttacag ctgaggaagg actactggcc ttttcagaaa tatcccagaa
    14101 tgctttacac cttttcattt ctaatgcact ggctggttgt aattccaaac agggattctc
    14161 tgattaggag tgaaaatgag agagtgatcc attttcagat ttttagaggt tggcatctgt
    14221 gttttaggta ctagttgata agtatttact ttcctggtga ctgggtaggg caagtgacaa
    14281 tacagtgtga aattccaaat gagacaagca gtactcattg gtgacaactg atacagtaac
    14341 gttcgcccga atacagtatg aatgctatag ggagataggc agtaaaatca tgtgaatcta
    14401 ttcaccacag ctattttttt ttctaactat agaatcattg tcaacctata agccatgctc
    14461 ctaatatcct agactcagga attaactcct gctggcttat cttttgtttg tgcgcagagt
    14521 tttggcctag gcctgtcccg agctgttttg ctacaaacac atacttaagg tgcagtctta
    14581 ctaagtcaat aatatactgt cagcagtgca gcctgtttta cagccacagt gatttactga
    14641 aatacaaaac aaacaaaaaa gtgagaaacg cctaggtaat ttgtttgagg catgttaaat
    14701 ctgttaatct gggaggaagc atagagtctt atctttcttc tatctggctt aggtgaacag
    14761 tgaccttagt gctttctgtt acagaaccag ttgacctagg caagtagttc tccatcttgg
    14821 ctgcacatta gaatcacctg gggcatttta aaaagtactg atgcctgggg cctcctctag
    14881 accttcgttt aagtggcctg ctgtgcaacc tgggctttaa aagctcctca gatgatttta
    14941 atgggcagcc aaggttgaga atcattttct aggtagtcct gaatggtctt tggcaggata
    15001 acctctacct ggttctcttt tgtcataaga tacctttatt ggtatcccag gcatggctct
    15061 gagtttaaaa cttagagtgg gccaaggctc aagtggtaaa atggatcatt tatttgtcct
    15121 cggagtaatt cagtagagag atgttgccat ccacccagtt tcctctctat accaaagtat
    15181 gcataagtca gcaaaacaga ttttcaaagt ctgctcccta gaatcctctt tcccttgcat
    15241 atgtgattta agtggagatt ttttttaact ctgctagctg aaatggagcg cttgaactta
    15301 ttaagagagc caagcccaag ccacctaggg tgatttttat ttgtaaagta agcaggtggc
    15361 attgttaaag ttaatgaaga aaaaggaggg ccctttctgg ggtgatggtg atgtatttga
    15421 ttgtttctta gcctatcttc taagtgggat ttcgatgtaa agcgactttc acttttccgt
    15481 gtttctttgt gaattaaatg cactagctaa ggcgtaaata tttctgagtt ttacatgaaa
    15541 tgtgaagtga gtcatttcag catctttgtt ccaggatatc aaagacttaa cccagtaatt
    15601 cccaaacgag tcttcatatc tttcattctc ccacccaggt ataaagatac ctgcccatgg
    15661 caacctcaca cgtgataagg gaaggggaga actgtttgat tatccttaaa aaagtgaaaa
    15721 ccaccattca aactaattag ctaccaagtg atttctaatt catgaaagaa atttgtgttt
    15781 aagagcaagt tcaaatatag cagtctctca tctgagagac tgccggcact gtagaaattt
    15841 tcattcatat attgcctaca aataattgat aatttcaatt tcaaataggt ggtgtgtttg
    15901 agaagaaaaa gtgggtggaa ggaaaaattg ctagtgcaga ggactgaatc aggctatgaa
    15961 atttcattaa aataacatta aggcctggct gtttgcttag catgtatatg ctgcaatgtc
    16021 agagaaaaac gccttctatg ccttagaaga tttgtgaagg cttccttata ttgtgtggaa
    16081 tagaaaagca atagcctttg agacttgttt gcatccggag agtagcccat tagggttttc
    16141 atactgagga acatggtgga gtactgtgaa acactgttga actttatgca aatcacaccg
    16201 cactggattt taagatttgg ggaaggagag tagaggagga ggagggggaa gtaatggtaa
    16261 aaatagagag agagaaactt gtactatatt ttacaccagt aatgaaagaa attccctatc
    16321 aggaattctc tatcaggact gtgaagctct gccaagttct tctgtcctac tgattggctt
    16381 gctgattcct cttaaacctt taagaaatcc tttctgaaag agctaaacaa aagctggtct
    16441 gactgcagtt tcaccaccct gtcccatccc ccctattcac aacaaaagaa aaacattccc
    16501 aaactagagg caaaagaaat gtctcagtcc gttaactttt catcctctat ggtctatgtt
    16561 cactgtttta gcctgttgaa ttattttgtg atctaatggc agaacttaaa tagatctgcc
    16621 agatgagtca ggaatcaatg gctcctcctt taagaaatct taaaatcaga actctcaatt
    16681 tttggcacgt cagcataagt gagtaaaggg agaagtaggt tgaaagagca cttagggaat
    16741 tccctggcgg ttagtgggtc cttggcgctt tcactgccaa aggcctgggt gcaatccctg
    16801 gtcagagaac taataagatc ccgcaaagcc acttagattt cccttagata tcctggcttc
    16861 tcataatttc aggtgggacc cacttatgct ctgtctctga gaagacaaga caagacagag
    16921 ggttctaagg tagaaaagtc gatgtagctg aaatatggtt tccttcagat ggatatagtc
    16981 ggaaagaaat ctgtccacct gttctcaatg gtgcttatat ggtgggtgac agctgtctcc
    17041 catccacctg tccctggcac tgtgccttcc cactggtcac tgtgaaaagc agatcacact
    17101 ggactcagag gccagaatcc aggacaattt cccccttctc atcacttctt catacagcta
    17161 ataatgtagc atttacttct ctttggaaaa ttcttgggtt tgtcccccaa gaaatagtaa
    17221 agcatttata ggaaaacaga aagtaagatt ctggtggtag ctatcaaata aagagattac
    17281 aggaaaattt taacttcccc tcagctgata tttattgata gcaaggacca actatgcctc
    17341 ctcatcctga gtttctaaag gctaccataa tatttctaag caacaaactt atctaacatt
    17401 ttttcacaac ttgttaatct aggattcata ttaaaacaga caatcaattt ctaaaatgtt
    17461 gttatccctg aaagggaatg agatagagtt tttaactaga agaacctacc ggtctgtttt
    17521 ttccctttga aaaaactaac atttgaggtt tgtgtctttc atctgaagcg attattctat
    17581 taataaagat gcctcagaaa agtcggtgag ccaggctagc actcttgcac ctctgagggt
    17641 gctggactgg gtttgtacat cttatttcct tagagaatat ctgtttttat tatgacctta
    17701 actataaata cctatatata ggaataggat tttctctcat cccaccctct tttaatcgtt
    17761 atcacttaag tgtaaaccac acctccccca ccccactttt actgaaaata tgcactttaa
    17821 ttcctaagga gagtggctgt tcctcgccct gaagccagat tacttcagga ggagagttga
    17881 ggagggagaa ctcttggtgg acctcgtgaa attaactaaa ttccataagg taaacacaga
    17941 aatcaaccat ttttaagctg ccccccaccc ccagccaaag ggaaaaagaa acaaccaaat
    18001 gaaaaagttc aaaatgccta ccttgatttt ggaagtttca ctggggaaaa tacccaatgt
    18061 taaattattt tctcagctac caaattatca gaaacttgtg ggtggttttg tgggaggctg
    18121 agactttttt tttttttaat aaaaggcaag tggatcacag gctacaaaat atgatcctga
    18181 tttgtgtcct ttctaagtat cagatctgtt ctctccctta atttgacagg cgttctcagt
    18241 ctctcctcct gtagattctg tccttcccct gatgacaagc caatagttct tggtggggtt
    18301 gcatgcctcc tagagcccca ggagccctgt tgtgtcgggg gagggggagg gggagggggg
    18361 agggcaggag ggtgggcaga gacttgggtt gggggaggga gattcagaga aagtgaaaat
    18421 atatgggttt atataaacat atttaaagca gtttagcaaa agctttctcg ttgaacagct
    18481 ttaagaacaa tgtgaatgaa atcttagcaa cttggttagt aatttgaaaa gtctattaat
    18541 gtatacttga aattctgttt gtataaaaat acattttcct ctttatttta acactgtgta
    18601 aaagaacatt atgcatgtga gtggtttgag aattaaatga tttaatatt
//
LOCUS       XM_032647832           18492 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 37
            (ZBTB37), transcript variant X3, mRNA.
ACCESSION   XM_032647832
VERSION     XM_032647832.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18492
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..18492
                     /gene="ZBTB37"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761690"
     CDS             301..1818
                     /gene="ZBTB37"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 37
                     isoform X1"
                     /protein_id="XP_032503723.1"
                     /db_xref="GeneID:116761690"
                     /translation="MTMEKSGNIQLEIPDFSNSVLSHLNQLRMQGRLCDIVVNVQGQA
                     FRAHKVVLAASSPYFRDHMSLNEMSTVSISVIKNPTVFEQLLSFCYTGRICLQLADII
                     SYLTAASFLQMQHIIDKCTQILEGIHFKINVAEVEAELSQTRTKHPEGPPESHRVTPN
                     LNRSLSPRHNTPKGNRRGQVSAVLDIRELSPPEESTSPQIIEQSSDVESREPILRINR
                     AGQWYVETGVADRGARSDDEVRVLGAVHIKTENLEEWLGPENQPSGEDGSSAEEVTAM
                     VIDTTGHGSVGQENYMLGSSGAKVARPTSSEIDRFSPSGSVVPLTERHRARSESPGRM
                     DEPKQPSSQVEESAMMGVSGYVEYLREQEVSERWFRYNPRLTCIYCAKSFNQKGSLDR
                     HMRLHMGITPFVCRMCGKKYTRKDQLEYHIRKHTGNKPFHCHVCGKSFPFQAILNQHF
                     RKNHPGCIPLEGPHSISPETTVTSRGQAEEESPSQEETVASGETAQGSVSTTGPD"
     misc_feature    325..693
                     /gene="ZBTB37"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 37 (ZBTB37); Region:
                     BTB_POZ_ZBTB37; cd18222"
                     /db_xref="CDD:349531"
     misc_feature    1429..1491
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1444..1446,1450..1452,1456..1458,1462..1467,
                     1474..1479,1486..1488,1528..1530,1534..1536,1546..1551,
                     1558..1563,1570..1572,1612..1614,1618..1620,1624..1626,
                     1630..1635,1642..1647)
                     /gene="ZBTB37"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1465..1542
                     /gene="ZBTB37"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1507..1575
                     /gene="ZBTB37"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1513..1575
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1552..1620
                     /gene="ZBTB37"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1597..1653
                     /gene="ZBTB37"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 acttccggga cggtgttccg gcccattccg gcccatttcc acccccggag ttcccgattc
       61 tccctcttac agctctcacc cctccagtgc cgacggtaga gaaagacctt actccagggg
      121 cttcctcctc actggggaat tgccgggaag agcaaacaaa aaaggcgctg gtgtaggctc
      181 caaaataaac atctgaattc atgatggcat cgacagaggc tcttattgga ttaaaagttt
      241 caaaacaaac aaaaacgctt tggaaaaagc agggttgaat gcctgcctac accctcaggc
      301 atgaccatgg agaagagtgg gaacatacaa ctggagatcc ctgacttcag caactctgtc
      361 ctgagccatc taaaccagct gcgcatgcag ggccgtctct gtgacatcgt ggtcaacgtg
      421 caaggacaag cttttcgggc tcacaaagtg gtactggctg ccagctcccc ctatttccga
      481 gatcacatgt ccttgaatga gatgagtact gtctccattt cagtcataaa gaaccctact
      541 gtttttgaac agctcctttc tttctgttat acggggcgga tatgcctgca actggcagat
      601 atcatcagct acctgacagc tgccagtttt ctgcagatgc agcatattat agacaaatgt
      661 acacagatcc tggagggcat tcatttcaaa atcaatgtgg ctgaggttga agctgaatta
      721 agtcaaacaa ggacaaagca cccagaggga cctccagagt ctcacagagt tacaccaaat
      781 ctgaaccgct cccttagtcc ccgacataat accccaaagg gaaaccggcg aggtcaggtt
      841 agtgctgtgc tggatatcag ggagctcagt cctcctgagg agtccaccag ccctcagata
      901 attgaacaga gttctgatgt agagagccgg gagcccattc ttcggatcaa ccgagcagga
      961 cagtggtacg tggagacagg agtagcagac cgaggggccc ggagtgatga tgaagttaga
     1021 gttcttggag cagtacacat caaaactgaa aatctagaag agtggcttgg gcctgagaat
     1081 cagccttccg gagaagatgg gagtagtgca gaggaagtca cagccatggt gattgacacc
     1141 acaggccatg gttctgtagg acaggaaaat tacatgttag gatcttcagg agccaaggtg
     1201 gctaggccaa caagcagtga aattgacaga tttagcccct ccggcagtgt tgttcccttg
     1261 acggagagac acagagccag aagtgagtct cctgggagaa tggatgagcc taagcaaccc
     1321 agctcccagg tagaagagtc agcaatgatg ggagtaagtg gctatgtgga gtatctccga
     1381 gagcaggaag tatctgagcg gtggttccgg tataaccccc gtctcacctg tatctactgc
     1441 gccaaatctt tcaaccagaa ggggagcctg gaccgccaca tgcgcctgca catggggatt
     1501 acaccattcg tctgccgcat gtgtggcaag aaatataccc ggaaagatca gctggagtat
     1561 cacatccgca agcacacagg caacaagccc tttcactgtc acgtttgtgg caaaagtttc
     1621 cccttccagg ccatcttgaa tcagcacttt cgcaaaaacc accctggctg tatacccctg
     1681 gaggggcctc atagcatctc ccctgaaaca actgtcacat ctcggggaca agccgaggaa
     1741 gagtcacctt cacaagaaga gacagttgct tctggggaaa ctgcccaggg ctctgtgtcc
     1801 actactgggc cagattgaaa cagcgaggag gtggggcaga ccctcttccc ctttgggccg
     1861 taagtaacca gcatcacggc catgggctgg tacttagatt cacaaaatgc cacaacacca
     1921 gatcagaaga tgttagcaag atgttgtatc agcaacatac acaaaagcac tagaggctct
     1981 tcccctcttt cttcccacct cacactttgg aaaataatca agcaaatcaa ctttctaatt
     2041 cagggatcaa cagccttggt ttgttaactt tataaaaaaa aaaaaatttt tttaacaaaa
     2101 caatgataaa tgatcattta tctaccagtc atgtttgaac actgtacttt ggtccatatc
     2161 accctggtgg ctgtaattgc ccagatctga aaaatgaagc aggagccttg gtcatctgaa
     2221 ccagccagcc acaagagaga aggaagtaat catgatggtg atgatgaggg ggaatttctc
     2281 ttcttccttc cctgccagaa catgcagttt cttatctcaa gaagggggga aaaaaaaaaa
     2341 aagaatccca gtggttcttt ttgttttgaa aggttagatt aatctttgcc ctgacaaggc
     2401 gtccgatact ttgcctggtt gtttcatgta tgcagccatc ttggagcagt attctaatgg
     2461 gcagcatcac ctgaagcact ttaggcacct ggaagtaaaa tgagcagcaa agtgtttgca
     2521 atgtgtagtt ctgcatttgg gggcctgggt gttgtattga ggaagcggag agcagggaag
     2581 gaagtgtttt tgttctgcaa ttatcgaaca gcacagagcc agccgtactg caacttcctg
     2641 attggtattt gtaagccata gtgcttatat atcttcaggt gttaggaaat ggctctagtc
     2701 cagatgaatt aacgcgtaag gctgactacc aaagtttcat ccagcctctt cggctcctag
     2761 cttcacataa cagcaatatt atgcatcaaa aatgtcactt tacagtgaaa tgagcctgga
     2821 ttgtattttt aaatccacag gtctccatat ttgataactt ttatatgaca ttttaaacac
     2881 attttttcgc aatattgtgg ttgtagaaat tcaacattat gcttcttact gcaactacag
     2941 ttccatttcc ttctacatat gtgatagttt atattttcag tccaatagaa gaacctcact
     3001 aaatccatgt cttgcgtctg caaacttagt aattcgtaaa ccaaccatca gcaaattgct
     3061 gctgactcca agagctttgc tttttcataa tacactacag ggcatttacc agaaaacatc
     3121 atgcacaatc atgttgcaat aaattgatca agggattgat tttgatcagg tttggttact
     3181 taatcattcc taagattttt aaaacttcaa gggacctttt tggtaattct gggtatttct
     3241 gagattctta atccagcact gagagtcaga aagaatttac caaacatgta gagctttaga
     3301 tgccctgtct tgcgtgcaga gaatgaagga ggattattaa gggatgcagg caagtagatg
     3361 cttacaagtt acagtgcaaa tagaaaagag aaaaatctct agcttctctt aattgatcat
     3421 taatttttta cagagtattt aaatatgtag tggtttaaga aattgttttg gtgcaggggc
     3481 atagatgatt gtaaaagaga tttgggagag gggctgatca tgcctgaact ggtggtgagc
     3541 catttgtgag aacgttagta gtgtgctccc ttcctgagac tgcttgggta tgtgaaaaag
     3601 tgggtaggaa agaatggcgt tgctttgata ataggaagtt agaatgcaaa gggtaattct
     3661 taagcaatct gagacctgta catacatata cagctgcacc atatcactaa tgaacggtta
     3721 ttttttcttc tggaaaaaca atgcatcttt caataggaat gcaacaatgc taccatttga
     3781 ttagagccta cccttaaaca ttatgttgaa gccgtatttt gtcttcagaa gacatagact
     3841 atggcattct cctctttaga cgggcaacag catgataggg tgaagactgt cgcctagggc
     3901 cgtcttaggg accaactatt gctctgtggc atagaaaaag tagagttgaa attagactga
     3961 aatctttaag gaaacatttc agctggtaat caatgctttc agtggacaga ttttgccatt
     4021 actaaatagg gaggtgagag gtacagaata tgctgcttta gatggagctt ttaagcctac
     4081 caaaaattgt taagtccatc ctacttttca gaagtattat gctggaaagt tctttattgc
     4141 tttgttagtt tcttagatgt tatttgagaa aatagagcta tttaaactat taccaaattg
     4201 taaaagtgag gtgcagtaat ttctgtaaag agaaactttg cagcatttgt cagtactcca
     4261 tccagggtta gcaacaaaca ttttaaatga agtagggact gtctgataga tgtggaaatg
     4321 ctatgagtgt ttgatgggtt ccccctccct ttttattcac tgctaatagg tttttgctgt
     4381 atctgtactg tgaatagagt gcttctcggt cgtctaggac cacatcagca caatcgtgtt
     4441 tgctggttct ctcctcttaa ctggcctagg gcagagccgt gaaattcatg aaaattcaag
     4501 ccagcctaac ttttaaacaa atttacgttt ctgaaagcag tttctccatt ttagttagaa
     4561 gagatattac tctaaataac tatccaagat tcttatccag gttcactgtg acattgtcct
     4621 agttcttagc taacatcact gtagggtcat aggagttagt agtgttctat ctaccttaat
     4681 gaatagctat ataggtgtgt gcacagagga tacctctctt aaggatgtac taaatggact
     4741 ttagctaatg ctgaaaactc attaccaaat tttaacttgc acgtgtcacc ttgtgaaggg
     4801 aacagcatta gcagtgagag ctaaatcatc attaagtact ttaatgccat gaaatagcaa
     4861 acactgggac tgttttcatt tattgagtag cacttaatag caaaggagct acccaatatt
     4921 ctcagcaaaa gaagagagat gacaatatat taatctcctt tcattctaag aggtaccttt
     4981 tattctctct cagaactctg ataccagttt aaaatatggc attggcatga acagtaatac
     5041 tgtacttagg cagaaggctc tttctaatga cttgttctcc ctttactcag aaccatattt
     5101 acctctgaac tgagttgaat tttactttat gtgagttgca gactaccccc aacctatctg
     5161 ttatactaga gggtcaaatc taatcttgaa tgtgtaaaaa taaattcgtt cctgaaggat
     5221 aaaaattgga aaagaaggga gatagcagtt aagggaagtt ttcttgttac tttttggggt
     5281 tttttttcaa tgtttccagt tccctctaca tcattgaaac agggttttcc aaagatggca
     5341 tgacaataga aataaaccat tttcctacta acttcatagt tgaaatcagg ccttggttgg
     5401 aagtggtttt atggaagagt gaaatagtga acatcatcct taatagctga atagtcttta
     5461 gtcaagaaat aacttatgaa aagttttagc tgttacttaa cactaatttt gttttaactg
     5521 gtaaaaatga tattttattt gactggaaga tctaatttaa agaaatgaaa gcaatgggta
     5581 atggaaagga aattaaattg aacaaagata aaagtcttct aagtcatagt ggaaaggcat
     5641 ttaatcagga aggagttgga atcttggaag tttttagttt ttcagctgca acagatgtgg
     5701 gtttttttct cttcctcaaa tgttctcctt atctgtatac ttactcattc agtattttgg
     5761 ttgctgagat ttagagaagg gacaactagc cattaaaccg ggtaaatccc ttaatttgag
     5821 aggatgcccc ttagcaaagt atatctctag gatttagtaa ttagatcaag gttcagcaaa
     5881 ccatagcctc caggccaaat cctgaggtca cctgtactgt aaagaaagtg gtagtggaat
     5941 aaatccacac ctattccttt tggtattgtt tatggctact ttctgcaata gtggcaaagt
     6001 tgagtacttt gacagagacc acatggcctg caaagcttga aaacaaaagt ttgccaagtt
     6061 cagaattaga tttgaaacaa ttacaccact gcctctcaat ttgtcactct tgccattttg
     6121 cctttataat aatagtttgg ttgaggtttt aaattcatac tgccatatat gcatcagttt
     6181 cttgaaagag gttgccatct ttttctagat ccttgtctca tttgtgctcc ttcttgaatc
     6241 ccattgcttt aaagcattta gagtaggcct tatgatttgt ccttgcctta aagctgcatt
     6301 aaagtttagg atggtaatta cagatttaag aaagtaattt ttaaaaataa ttcccacgta
     6361 taataatgta gggttaaatg aataccatgt ttacataaag tactgtaaga aaagtaatgt
     6421 ttttataagt gttttgccat ttctctaagt taacatgatg atgatggcaa gaatgaagtt
     6481 attcccacta gtattaaaat ttaatttctg ttatgaataa gtggtttgat tcttatccaa
     6541 agtactgttt ttctagatta gaaacctcta cccatttcct ttactataaa tcttcatttc
     6601 ctcaagtaaa ctcactctgt tccatgtgga atagtaaaaa gccaaaatct tccttttttt
     6661 ttttttttaa gtcagtgttt taaaacataa tgaaacatct gaagatttaa agttcttttt
     6721 agacctacct tccaatttct gttattgttt gtaatgcttc taaatctgta atgggccatt
     6781 atgtatttga tttgtgaatg ttcattctta ctgttcaaat agcttattta tgccagatgt
     6841 ggaaaaaatg gaaaatgtta ggatgataat aaacagaatt ccttgcaaga ggagaatata
     6901 attgctcccc atttggaaac aatacatgga cttctggggt aagtgttcta ggccatgctg
     6961 atacaataca gtggatttga ttcttacttt gttgtgagct ctaccaagac atacgaagtt
     7021 tggatgagtg atctagcagc atatatggca ccacttcagt aggcatttta ttcttaaagt
     7081 tgcctttttt ctaagttgga tattagtagg ttttatatgt tacaccctcc aagtaataga
     7141 taatcttcat ctagaaggtt ccagaatatt tgcttaggtg atatctgcct tgtcttagag
     7201 cacttatagt aatagtgagt tcttgagatt ttggagtgct gcttttctgg ttaatttggg
     7261 attctgatta atctggggta gaggacttgt gaacgaaatc gtatttaggt agcccagtga
     7321 atcatctgca tccaccacca tttgaggtct tggtaataga tgtcatttaa attcgaatct
     7381 gttgaaaaca atggagtttg ccaagcatta tgacttcttt gataattatc agtcttacgt
     7441 tgctttgcct cctttgcttt ttagtgtctg ttttcactct tattcttaag tggtgctttt
     7501 cccagggcca gtctttttac tttgcattaa gtatgttttc ttgctcagga caagccaagg
     7561 ttggatattt tgagtacttt caaacccgac ttaattacat tccaaaggat gtaattgttg
     7621 ataggaacag tgatatcaaa acctgcaaga tatctgtaca gactatccag ctttgttgtg
     7681 taggcagact atcttttccc tcaattgtaa ggaacagcaa tgacttagaa ggcaaatatt
     7741 acctgaaata tacattatgt tcacagagcg tgcatatata agataaataa atatcttaca
     7801 tcttctctat tatctgtata ataaatacct cccatagtaa cgtaattaag aaaggtccat
     7861 tagctcaaat agtggaagtt ttaaaaacaa agcttagtta caaaggcaga gcagtttagg
     7921 gaaaaaaaaa cacacttcta atgcttgctt ttttcatgtc tactcagtaa gtcctgttaa
     7981 ggaagctaga attcaccacc cagttaagag agagatttgt tcagtatctc atatgaccaa
     8041 caacacaatt taatatactg tgaattttag aatctcaatt aatccataat gccggaagtc
     8101 aaagtatgta tctcatagga aaatgttccc tgttctatga aatcacttat cttaaatggt
     8161 aggtagcata caggagaatc tgttccatta agtaaatttt tgttccatta agtaattttt
     8221 ggtaccagat aatctgcttg gaatttgtat aacaaaattg attttagaca tagtttagat
     8281 gtggcttcct atacttgaga gtcctaaacc cacttggtta gaggctggtg tatactttta
     8341 aaagcctgca cttttcacta cagagataaa agatcaaaaa gaaggggaca gaattaacca
     8401 tactaagtgc tttagagaca taattgcagt aaattctcaa gataatccta tgaggtagta
     8461 atggtagtaa ctaaaaatag cagactttaa gtgtttacta tgagttaggc acagttctat
     8521 gtgcctcacc gttaactcat ctaatcctta tgacaatccc attagggtag atagtgttat
     8581 tatcctcact ttagagagaa agaaacggag acacagagag gttgacctag gcagtctttc
     8641 actacacttg acattcttag tagactatgt tgcctttaat aggtgtaatt atactacatt
     8701 ttatagatga ggaaactgtt gagcccaaga ttacacaatg gataaactgc agagccaata
     8761 tttacctatc tgattccaaa gcccaggcta tctccagtac attgtgttaa ctctgtttac
     8821 ttataagagt tggagtgaac tagaatatac aatagccagt aacagcactg cttttagtga
     8881 acttttaatt caggaataag tgattggaag atttcttcat gagataaagc agttgacctc
     8941 tgagcagatg ttgaatgatg aatattttct ggggatattg cccaccaatt tagaggagtc
     9001 acccatttgg tagttctaat tgtgaatgag tgattgagtt actaccaagg caaaaattga
     9061 aagatagata gcattccagt tatctattgc tgtgtaatga actatcctaa accttagtga
     9121 cttaaaacag caactacttt atatatcgca tgatgttgtg aatcagaaat tcaggaaagg
     9181 cttgtctagg caatttcttg ctccctgtgg taacagctca ggtcacctgg tagtattcag
     9241 caggtggctg gaccagtcag gagtgtccaa gatgatctca cattcctgac accttggtag
     9301 ggagggctag aagaataggc ccagcaggcc tcctctccct ctctggagtc tcagggactc
     9361 tctatctgat ctctccatca tagtagtcag agttatgaaa tggcagctca ggcctccaag
     9421 aggctgggca gaggatgcca gtcctcttca aggccaggcc cagagctatc acagagttat
     9481 caccatacac tattggtcaa agactggtca gcccagattc aaggggagag gaaatacctt
     9541 accacttgat ggaagatgtg tcaaggattt ggggccaact ttaatctgtt ataggtagca
     9601 tgaggttttt ttgatttgtc ttaactcttg tgtgttcatt taggtcagtt gtttgtgcca
     9661 tagaaaccat ttcttatatc taccatgggt cagtaaagga gctagaagga gaatgagaca
     9721 aatacctgga acagatttct ttagcttccc accccctgag tttcatttat attatagcaa
     9781 aatttccatt ttttcttttg ttccaagttc caaattgtga gcatttgccg tttttttttt
     9841 ttttttttcc tgtgaagcca cagtaactgt ctatgctaaa ccagaaatac tctagaggga
     9901 atagaaagct tgctgttaca gaccttgatt tattagagat gtcagctgta tttaatttac
     9961 aaataggcaa gaactcctgt ggtatggaaa atttatatgg ctgctaaatc tgtttcaaca
    10021 ggagtttcta ttgagtggct agatggatta tattcttgag atgattgcaa gttttgccta
    10081 catatcctac acatctttac tgccaccaca ccacctctgg cacaaatttg tgctaggaga
    10141 ataggttcat tccatttata ttaccttcca tatgggaaaa tccgttgccc agttttatag
    10201 ttgttaatct tttaaaatta tcagttgcta tcagcttctg ttatatagaa taacaaatca
    10261 ttgaattttt acaatttttg gttagacttg tcaaatttag gatgctttat ttaaattcct
    10321 gctggcttat aaatggactt tttttgcctt cagaagaaat aatggcagag aatggattct
    10381 gctctaaaaa tgatcatccc caaatgaata cactttctaa gagaagaaag gtttggtatt
    10441 atctatccat tccatgtata gtggtttcct agagaattag ttgtgagggc ttcttgctgg
    10501 tcatccccaa ttatcatata gtgaagagat ctctgttccc cggtcaggcc tcaggaatta
    10561 caaatacagg atataaaagg ggtactcagg gctgaagact taatttagga ctctagaaaa
    10621 ttctgggaag agaaaagaaa gacttcggca tttgtagttg aataaccagg gttggaatgt
    10681 ttgactcatt taggcatcag gattaattag attttatcat ataatgattg gggcaaattt
    10741 tgatgaataa aaataaaata gtcttaacat tttctttttt atccatattt ccactctgct
    10801 gtacctcaaa gtctgctctt tgtgacagag aagtctttga aaatatactc ccagggaatg
    10861 aaaaattggt tctaggtact tttgctagaa ccatctttgc catagtcaac tttgctgcaa
    10921 gcattttcac cttataacta attcgctgta aggcaatttt gccataaaag ataaaaataa
    10981 aaaataaaag agggacatta aaaaggacat aatgcagcat gaaaaatgaa taacaaaatt
    11041 taaaaaaaat tttattgcaa aatacaaaat atttgaatac ctctaaaatg tgtgtagatt
    11101 catggcaagc ctgcacaaat aactgatttt gtgtgttgta cctaagcact tgtcttccag
    11161 gtctttcatt cttagtattt tatacttttt tttttttttt tgcttgttga ttcatctcct
    11221 cattcagcat tgttcttttt ctttttgctt aaatttcttc cttcattaag agaggtatca
    11281 gtttccaaat accaggatgc atatttgtag ccaagctttg tattgcattg tgaaagcctc
    11341 tgcactgttg tttgttcttg gcattttgtc atatgtccat tcatagactt tccaaagttc
    11401 tgtgggaaat gtgggttcaa ctctgcacct ttgaggcttt tggcctcttt atcctccagt
    11461 gtagtgtttc aaaataagaa accaactctt ggggcaaatc atcattatct gtcagctcag
    11521 taaaggcatc agtaatgttg ctaactggga gaaatgccgg tcgaaaccaa actagcaaac
    11581 caaaaactca tccagttatt ttatcttttg gggcaaaaat tgtcttatga ccaattagtt
    11641 atgctgtgaa aatgtttgca gcaaagatgc ttatagtgaa aatactggac acttgaaaaa
    11701 tatttgataa tctatgaaga tgccactcat tcagtttctt acagctcttt gggccctcct
    11761 ctagattctc tgtgactctt aaatttgaaa tcatctggtg gttgcacgaa aactaagtat
    11821 agttgtttct tgaacaatgt gggagttagg gtgccgacct ctgcaagtgg aaaatccccc
    11881 tataacttat agttggcctc cgtttctgtg gttcctctgc atccagggat tcaaccaacc
    11941 actgatggtg tagtactgta gtatttacta ttgaaaaaaa cctagctata aatggaccca
    12001 tgcagttcaa acccatgtcg gtcaagggtc aactgtactg tggtctcaaa ttgaaaaaga
    12061 gaacaaagtc agaagaaagg gaacctgcag actgacaaaa tacttattct ttcttttcag
    12121 catcacaagt ctaaaccatt taataaccac atcctgagaa attccttaag gtttagattt
    12181 ctgcttttag catatcttgt ggcagatgtt ttgacatttt tgaaggtgat ctactgagtt
    12241 tcctataaat agaatcctaa ctacagtggt tcttaaagaa ccactgcaaa aacagaatta
    12301 caacacaggg aacaaagctt aaaatgtgtt tcctctggaa gccaagatgc taaatcagga
    12361 gtcactacgt gtggctggaa tccacctcta gaatggctat cagccagata gcaaagatat
    12421 ttagaattta tatggtattt gatattttta caaaaatgat tttaaatcat ataacttgaa
    12481 gttttaaaaa atgagcctgt tttctttttg gaaaagtggg ccaataaaaa taacactaat
    12541 ataattcaat tgtatatgca tgtgcattga acacagagtg gtatactaaa gatagttcat
    12601 gcaaataact tttgtgggaa gtttggctat tttcttaata tcttttttca taaatgtatg
    12661 tttataaata tatttactca ttcactatga ctttggtagc tttagaagca ttttgttagc
    12721 tgtatcattg attataaaaa tcaaattctt ggcatagtag gctatgagag cttttagttg
    12781 ctttgtttgt attttggcta agaaaattgt ttcttgcact ttctatttat aaagatgtta
    12841 taacactttg cacccactta gtgcagctgt tcttcagcga caaaagatgt aggcgttaaa
    12901 gtgaaatgta tgtttagaag cctggcaaaa ggagggatct caaaagaaca aatttggctt
    12961 gcatctacct gagaaaagct gaggataata taaaatttag attgaaagta tctgttaggc
    13021 taggtgtaca gttgctgcaa gttgcaatat cattgtgagt tgccagctat gtgtatgtga
    13081 ttttatgtat gtatgtgaga aaaaggtgtc tgatgaaggc agataagtca gtgtagaaaa
    13141 ttctacctcc cattgaagac tgagaatact ccaagattgc cctgtagccc cttaggcagg
    13201 aggctggatt cctcagccac catccacccc attctcttgt actcacttca gctcctctac
    13261 ctctgagcac ttggctgaag atagagtgta gctttctgta gcaagcaaag gaaagccaga
    13321 cccaaaatat agagactgca gtatctcact tcttgtcatg ttcagatgtc aatgtttggt
    13381 ttcattaccc aaatcaaaca gaacacttgg gtttagtgct tttatccact ggcgtctatt
    13441 tggcaagagt agcccgtgga agtggagtat ttctgttgtt tttaaaggtg cactcaactc
    13501 ctttgaatga tgtgaaaatt ttgtttgaat cctgaggggt tttttttttt tttttaaatt
    13561 gccatttgca gtccattttg ggggactgga atatcaatca tattttcctg ataatgagcc
    13621 ttctgccaat atcttaactt gcagttttgc atgcagtttt ttggatgacc tgttttgctt
    13681 ttagacactc cgaagagaga tttttctggt tttaatgcca atactgttaa aatagtcagg
    13741 atggcctgtt gtgggtgcca ggaaattcag ttttggaagt aaaatgccac taggcaggcc
    13801 acctaatctt taaatgcagt tgtagcactc aactgatttg ccgtttgggg cacaagtaca
    13861 ctgagccaag tcaggatacc taccgtgtga acatttgtta cagctgagga aggactactg
    13921 gccttttcag aaatatccca gaatgcttta caccttttca tttctaatgc actggctggt
    13981 tgtaattcca aacagggatt ctctgattag gagtgaaaat gagagagtga tccattttca
    14041 gatttttaga ggttggcatc tgtgttttag gtactagttg ataagtattt actttcctgg
    14101 tgactgggta gggcaagtga caatacagtg tgaaattcca aatgagacaa gcagtactca
    14161 ttggtgacaa ctgatacagt aacgttcgcc cgaatacagt atgaatgcta tagggagata
    14221 ggcagtaaaa tcatgtgaat ctattcacca cagctatttt tttttctaac tatagaatca
    14281 ttgtcaacct ataagccatg ctcctaatat cctagactca ggaattaact cctgctggct
    14341 tatcttttgt ttgtgcgcag agttttggcc taggcctgtc ccgagctgtt ttgctacaaa
    14401 cacatactta aggtgcagtc ttactaagtc aataatatac tgtcagcagt gcagcctgtt
    14461 ttacagccac agtgatttac tgaaatacaa aacaaacaaa aaagtgagaa acgcctaggt
    14521 aatttgtttg aggcatgtta aatctgttaa tctgggagga agcatagagt cttatctttc
    14581 ttctatctgg cttaggtgaa cagtgacctt agtgctttct gttacagaac cagttgacct
    14641 aggcaagtag ttctccatct tggctgcaca ttagaatcac ctggggcatt ttaaaaagta
    14701 ctgatgcctg gggcctcctc tagaccttcg tttaagtggc ctgctgtgca acctgggctt
    14761 taaaagctcc tcagatgatt ttaatgggca gccaaggttg agaatcattt tctaggtagt
    14821 cctgaatggt ctttggcagg ataacctcta cctggttctc ttttgtcata agataccttt
    14881 attggtatcc caggcatggc tctgagttta aaacttagag tgggccaagg ctcaagtggt
    14941 aaaatggatc atttatttgt cctcggagta attcagtaga gagatgttgc catccaccca
    15001 gtttcctctc tataccaaag tatgcataag tcagcaaaac agattttcaa agtctgctcc
    15061 ctagaatcct ctttcccttg catatgtgat ttaagtggag atttttttta actctgctag
    15121 ctgaaatgga gcgcttgaac ttattaagag agccaagccc aagccaccta gggtgatttt
    15181 tatttgtaaa gtaagcaggt ggcattgtta aagttaatga agaaaaagga gggccctttc
    15241 tggggtgatg gtgatgtatt tgattgtttc ttagcctatc ttctaagtgg gatttcgatg
    15301 taaagcgact ttcacttttc cgtgtttctt tgtgaattaa atgcactagc taaggcgtaa
    15361 atatttctga gttttacatg aaatgtgaag tgagtcattt cagcatcttt gttccaggat
    15421 atcaaagact taacccagta attcccaaac gagtcttcat atctttcatt ctcccaccca
    15481 ggtataaaga tacctgccca tggcaacctc acacgtgata agggaagggg agaactgttt
    15541 gattatcctt aaaaaagtga aaaccaccat tcaaactaat tagctaccaa gtgatttcta
    15601 attcatgaaa gaaatttgtg tttaagagca agttcaaata tagcagtctc tcatctgaga
    15661 gactgccggc actgtagaaa ttttcattca tatattgcct acaaataatt gataatttca
    15721 atttcaaata ggtggtgtgt ttgagaagaa aaagtgggtg gaaggaaaaa ttgctagtgc
    15781 agaggactga atcaggctat gaaatttcat taaaataaca ttaaggcctg gctgtttgct
    15841 tagcatgtat atgctgcaat gtcagagaaa aacgccttct atgccttaga agatttgtga
    15901 aggcttcctt atattgtgtg gaatagaaaa gcaatagcct ttgagacttg tttgcatccg
    15961 gagagtagcc cattagggtt ttcatactga ggaacatggt ggagtactgt gaaacactgt
    16021 tgaactttat gcaaatcaca ccgcactgga ttttaagatt tggggaagga gagtagagga
    16081 ggaggagggg gaagtaatgg taaaaataga gagagagaaa cttgtactat attttacacc
    16141 agtaatgaaa gaaattccct atcaggaatt ctctatcagg actgtgaagc tctgccaagt
    16201 tcttctgtcc tactgattgg cttgctgatt cctcttaaac ctttaagaaa tcctttctga
    16261 aagagctaaa caaaagctgg tctgactgca gtttcaccac cctgtcccat cccccctatt
    16321 cacaacaaaa gaaaaacatt cccaaactag aggcaaaaga aatgtctcag tccgttaact
    16381 tttcatcctc tatggtctat gttcactgtt ttagcctgtt gaattatttt gtgatctaat
    16441 ggcagaactt aaatagatct gccagatgag tcaggaatca atggctcctc ctttaagaaa
    16501 tcttaaaatc agaactctca atttttggca cgtcagcata agtgagtaaa gggagaagta
    16561 ggttgaaaga gcacttaggg aattccctgg cggttagtgg gtccttggcg ctttcactgc
    16621 caaaggcctg ggtgcaatcc ctggtcagag aactaataag atcccgcaaa gccacttaga
    16681 tttcccttag atatcctggc ttctcataat ttcaggtggg acccacttat gctctgtctc
    16741 tgagaagaca agacaagaca gagggttcta aggtagaaaa gtcgatgtag ctgaaatatg
    16801 gtttccttca gatggatata gtcggaaaga aatctgtcca cctgttctca atggtgctta
    16861 tatggtgggt gacagctgtc tcccatccac ctgtccctgg cactgtgcct tcccactggt
    16921 cactgtgaaa agcagatcac actggactca gaggccagaa tccaggacaa tttccccctt
    16981 ctcatcactt cttcatacag ctaataatgt agcatttact tctctttgga aaattcttgg
    17041 gtttgtcccc caagaaatag taaagcattt ataggaaaac agaaagtaag attctggtgg
    17101 tagctatcaa ataaagagat tacaggaaaa ttttaacttc ccctcagctg atatttattg
    17161 atagcaagga ccaactatgc ctcctcatcc tgagtttcta aaggctacca taatatttct
    17221 aagcaacaaa cttatctaac attttttcac aacttgttaa tctaggattc atattaaaac
    17281 agacaatcaa tttctaaaat gttgttatcc ctgaaaggga atgagataga gtttttaact
    17341 agaagaacct accggtctgt tttttccctt tgaaaaaact aacatttgag gtttgtgtct
    17401 ttcatctgaa gcgattattc tattaataaa gatgcctcag aaaagtcggt gagccaggct
    17461 agcactcttg cacctctgag ggtgctggac tgggtttgta catcttattt ccttagagaa
    17521 tatctgtttt tattatgacc ttaactataa atacctatat ataggaatag gattttctct
    17581 catcccaccc tcttttaatc gttatcactt aagtgtaaac cacacctccc ccaccccact
    17641 tttactgaaa atatgcactt taattcctaa ggagagtggc tgttcctcgc cctgaagcca
    17701 gattacttca ggaggagagt tgaggaggga gaactcttgg tggacctcgt gaaattaact
    17761 aaattccata aggtaaacac agaaatcaac catttttaag ctgcccccca cccccagcca
    17821 aagggaaaaa gaaacaacca aatgaaaaag ttcaaaatgc ctaccttgat tttggaagtt
    17881 tcactgggga aaatacccaa tgttaaatta ttttctcagc taccaaatta tcagaaactt
    17941 gtgggtggtt ttgtgggagg ctgagacttt tttttttttt aataaaaggc aagtggatca
    18001 caggctacaa aatatgatcc tgatttgtgt cctttctaag tatcagatct gttctctccc
    18061 ttaatttgac aggcgttctc agtctctcct cctgtagatt ctgtccttcc cctgatgaca
    18121 agccaatagt tcttggtggg gttgcatgcc tcctagagcc ccaggagccc tgttgtgtcg
    18181 ggggaggggg agggggaggg gggagggcag gagggtgggc agagacttgg gttgggggag
    18241 ggagattcag agaaagtgaa aatatatggg tttatataaa catatttaaa gcagtttagc
    18301 aaaagctttc tcgttgaaca gctttaagaa caatgtgaat gaaatcttag caacttggtt
    18361 agtaatttga aaagtctatt aatgtatact tgaaattctg tttgtataaa aatacatttt
    18421 cctctttatt ttaacactgt gtaaaagaac attatgcatg tgagtggttt gagaattaaa
    18481 tgatttaata tt
//
LOCUS       XM_032647842            1419 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 37
            (ZBTB37), transcript variant X4, mRNA.
ACCESSION   XM_032647842
VERSION     XM_032647842.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1419
                     /gene="ZBTB37"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761690"
     CDS             166..1215
                     /gene="ZBTB37"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 37
                     isoform X2"
                     /protein_id="XP_032503733.1"
                     /db_xref="GeneID:116761690"
                     /translation="MTMEKSGNIQLEIPDFSNSVLSHLNQLRMQGRLCDIVVNVQGQA
                     FRAHKVVLAASSPYFRDHMSLNEMSTVSISVIKNPTVFEQLLSFCYTGRICLQLADII
                     SYLTAASFLQMQHIIDKCTQILEGIHFKINVAEVEAELSQTRTKHPEGPPESHRVTPN
                     LNRSLSPRHNTPKGNRRGQVSAVLDIRELSPPEESTSPQIIEQSSDVESREPILRINR
                     AGQWYVETGVADRGARSDDEVRVLGAVHIKTENLEEWLGPENQPSGEDGSSAEEVTAM
                     VIDTTGHGSVGQENYMLGSSGAKVARPTSSEIDRFSPSGSVVPLTERHRARSESPGRM
                     DEPKQPSSQVSIIED"
     misc_feature    190..558
                     /gene="ZBTB37"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 37 (ZBTB37); Region:
                     BTB_POZ_ZBTB37; cd18222"
                     /db_xref="CDD:349531"
ORIGIN      
        1 tggggaattg ccgggaagag caaacaaaaa aggcgctggt gtaggctcca aaataaacat
       61 ctgaattcat gatggcatcg acagaggctc ttattggatt aaaagtttca aaacaaacaa
      121 aaacgctttg gaaaaagggt tgaatgcctg cctacaccct caggcatgac catggagaag
      181 agtgggaaca tacaactgga gatccctgac ttcagcaact ctgtcctgag ccatctaaac
      241 cagctgcgca tgcagggccg tctctgtgac atcgtggtca acgtgcaagg acaagctttt
      301 cgggctcaca aagtggtact ggctgccagc tccccctatt tccgagatca catgtccttg
      361 aatgagatga gtactgtctc catttcagtc ataaagaacc ctactgtttt tgaacagctc
      421 ctttctttct gttatacggg gcggatatgc ctgcaactgg cagatatcat cagctacctg
      481 acagctgcca gttttctgca gatgcagcat attatagaca aatgtacaca gatcctggag
      541 ggcattcatt tcaaaatcaa tgtggctgag gttgaagctg aattaagtca aacaaggaca
      601 aagcacccag agggacctcc agagtctcac agagttacac caaatctgaa ccgctccctt
      661 agtccccgac ataatacccc aaagggaaac cggcgaggtc aggttagtgc tgtgctggat
      721 atcagggagc tcagtcctcc tgaggagtcc accagccctc agataattga acagagttct
      781 gatgtagaga gccgggagcc cattcttcgg atcaaccgag caggacagtg gtacgtggag
      841 acaggagtag cagaccgagg ggcccggagt gatgatgaag ttagagttct tggagcagta
      901 cacatcaaaa ctgaaaatct agaagagtgg cttgggcctg agaatcagcc ttccggagaa
      961 gatgggagta gtgcagagga agtcacagcc atggtgattg acaccacagg ccatggttct
     1021 gtaggacagg aaaattacat gttaggatct tcaggagcca aggtggctag gccaacaagc
     1081 agtgaaattg acagatttag cccctccggc agtgttgttc ccttgacgga gagacacaga
     1141 gccagaagtg agtctcctgg gagaatggat gagcctaagc aacccagctc ccaggtgtct
     1201 atcattgaag attgattttt aaaaagttgg tgaactcacc aagtagaaca caataaattg
     1261 taaacactgt ggccctttaa aaggaaacac tggtggatta agattgcgta gctaattttt
     1321 tatcttctgc actatactga tagtatcttg tttaattttt atctaaacca ctagatgttt
     1381 attgtgtata tagtatagta acagcagtaa gacattgtt
//
LOCUS       XM_032647855            1646 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus serpin family C member 1 (SERPINC1),
            transcript variant X1, mRNA.
ACCESSION   XM_032647855
VERSION     XM_032647855.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1646
                     /gene="SERPINC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 mRNAs, 20 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761700"
     CDS             172..1569
                     /gene="SERPINC1"
                     /codon_start=1
                     /product="antithrombin-III isoform X1"
                     /protein_id="XP_032503746.1"
                     /db_xref="GeneID:116761700"
                     /translation="MLSNGIGTVAAGKRSVCLLSLLLIGLWSCVTCHWSPGEDICTAK
                     PRDIPMNPMCIYRAPEKKATEGEGSEQKIPGATNRRVWELSKANSHFAATFYQHLADN
                     KNDKDNIFLSPLSISTAFAMTKLGACDNTLKQLMEVFKFDTISEKTSDQIHFFFAKLN
                     CRLYRKANKSSELVSANRLFGDKSLTFNETYQDISEMVYGAKLQPLDFKGNAEQSRVT
                     INQWISNKTDGRITDVIPPEAINEFTVLVLVNTIYFKGLWKSKFSPENTRKELFYKAD
                     GESCSVFMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKLEKSLTKVEQELTP
                     EVLQEWLDELAETLLVVHMPRFRIEDSFSVKERLQDMGLEDLFSPEKSKLPGIVAEGP
                     RDLYVSDAFHKAFLEVNEEGSEAAASTVIGIAGRSLNPSRVTFKANRPFLVLIREVAL
                     NTIIFMGRVANPCVN"
     misc_feature    382..1563
                     /gene="SERPINC1"
                     /note="serpin family C member 1, antithrombin III; Region:
                     serpinC1_AT3; cd02045"
                     /db_xref="CDD:381002"
     misc_feature    order(382..486,490..600,607..1065,1066..1332,1351..1467,
                     1471..1563)
                     /gene="SERPINC1"
                     /note="domain swapped homodimer interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:381002"
     misc_feature    order(400..414,604..612,634..636,643..645,655..657)
                     /gene="SERPINC1"
                     /note="heparin binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:381002"
     misc_feature    order(964..969,973..975,1027..1029,1033..1041,1207..1209,
                     1213..1215,1219..1221,1225..1227,1429..1467,1471..1473)
                     /gene="SERPINC1"
                     /note="thrombin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381002"
     misc_feature    order(1405..1467,1471..1491)
                     /gene="SERPINC1"
                     /note="reactive center loop (RCL); other site"
                     /db_xref="CDD:381002"
ORIGIN      
        1 ccctgggagc atgtcatcag cctttgacct catgcctccc ctcctcacca gctccatccc
       61 ccatcctagc ctctggaacc tcatccagat ttagaggaaa gaaccagttc agagggattg
      121 cctcaaacca cactatctcc actcgcccag acctgtggaa gattagcaac catgctttcc
      181 aatgggatag gaactgtagc tgctggaaaa aggagtgtat gtcttctctc cttgctgctt
      241 attggcctct ggagctgcgt gacctgtcat tggagccctg gggaagacat ctgcacagcc
      301 aagcctcggg acattcccat gaatcccatg tgcatttacc gtgccccaga gaagaaagca
      361 accgagggcg agggttcaga gcagaagatc cccggggcca ccaaccggcg ggtttgggaa
      421 ctgtccaagg ccaattccca ctttgccgcc accttctatc agcatctggc agacaacaag
      481 aatgacaagg acaacatttt cctgtcaccc ctgagtatct ccacagcttt tgctatgacc
      541 aagctgggtg cctgtgacaa caccctcaag cagctgatgg aggtttttaa gtttgatacc
      601 atctctgaga agacatctga tcagatccac tttttctttg ccaaactgaa ctgccgactc
      661 tatcgaaaag ccaataaatc ctctgagttg gtatcagcca accgtctttt tggagacaaa
      721 tcccttacct tcaatgagac ctaccaggac atcagtgaga tggtatatgg agccaagctc
      781 cagcccctgg acttcaaggg aaatgcagag cagtccagag tgaccatcaa ccaatggata
      841 tccaataaga ctgatgggcg tatcactgat gtcattcccc cagaagccat caatgagttc
      901 actgtgctgg tgctggtcaa caccatttac ttcaagggcc tgtggaagtc aaagttcagc
      961 cctgagaaca caaggaagga acttttctac aaggccgatg gggagtcgtg ttcggtattc
     1021 atgatgtacc aggaaggcaa gttccgctat cggcgcgtgg cagagggcac ccaggtgctt
     1081 gagttgccct tcaagggtga tgacatcacc atggtgctca tcctgcccaa gcttgagaag
     1141 agcctgacca aggtggaaca ggaactcacc ccagaggtgc tgcaggagtg gctagatgag
     1201 ctggcagaga cactgctggt ggtccacatg ccccgcttcc gcatcgagga cagcttcagc
     1261 gtgaaagagc ggctgcaaga catgggcctt gaggacctct tcagccctga gaagtccaag
     1321 ctcccaggta ttgttgcaga aggcccgagg gacctctatg tctcagatgc attccacaag
     1381 gcatttcttg aggtaaacga ggaaggcagt gaagcagcag caagtaccgt cattggcatt
     1441 gctggccgtt cgctgaaccc cagcagagtg accttcaagg ccaacaggcc cttcctggtt
     1501 cttatcaggg aagttgctct gaacactatt atcttcatgg gcagagtagc caacccttgt
     1561 gttaactaaa atgttatcct ttatagttct tcctattttg gtttgtgaat agaagtaaaa
     1621 ataaatacaa ctactcccat atctca
//
LOCUS       XM_032647859            1669 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus serpin family C member 1 (SERPINC1),
            transcript variant X2, mRNA.
ACCESSION   XM_032647859
VERSION     XM_032647859.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1669
                     /gene="SERPINC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761700"
     CDS             143..1393
                     /gene="SERPINC1"
                     /codon_start=1
                     /product="antithrombin-III isoform X2"
                     /protein_id="XP_032503750.1"
                     /db_xref="GeneID:116761700"
                     /translation="MNPMCIYRAPEKKATEGEGSEQKIPGATNRRVWELSKANSHFAA
                     TFYQHLADNKNDKDNIFLSPLSISTAFAMTKLGACDNTLKQLMEVFKFDTISEKTSDQ
                     IHFFFAKLNCRLYRKANKSSELVSANRLFGDKSLTFNETYQDISEMVYGAKLQPLDFK
                     GNAEQSRVTINQWISNKTDGRITDVIPPEAINEFTVLVLVNTIYFKGLWKSKFSPENT
                     RKELFYKADGESCSVFMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKLEKSL
                     TKVEQELTPEVLQEWLDELAETLLVVHMPRFRIEDSFSVKERLQDMGLEDLFSPEKSK
                     LPGIVAEGPRDLYVSDAFHKAFLEVNEEGSEAAASTVIGIAGRSLNPSRVTFKANRPF
                     LVLIREVALNTIIFMGRVANPCVN"
     misc_feature    206..1387
                     /gene="SERPINC1"
                     /note="serpin family C member 1, antithrombin III; Region:
                     serpinC1_AT3; cd02045"
                     /db_xref="CDD:381002"
     misc_feature    order(206..310,314..424,431..889,890..1156,1175..1291,
                     1295..1387)
                     /gene="SERPINC1"
                     /note="domain swapped homodimer interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:381002"
     misc_feature    order(224..238,428..436,458..460,467..469,479..481)
                     /gene="SERPINC1"
                     /note="heparin binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:381002"
     misc_feature    order(788..793,797..799,851..853,857..865,1031..1033,
                     1037..1039,1043..1045,1049..1051,1253..1291,1295..1297)
                     /gene="SERPINC1"
                     /note="thrombin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381002"
     misc_feature    order(1229..1291,1295..1315)
                     /gene="SERPINC1"
                     /note="reactive center loop (RCL); other site"
                     /db_xref="CDD:381002"
ORIGIN      
        1 ccagccagcc ccacgcttgc ccagcagacc actttggagt gtatgtcttc tctccttgct
       61 gcttattggc ctctggagct gcgtgacctg tcattggagc cctggggaag acatctgcac
      121 agccaagcct cgggacattc ccatgaatcc catgtgcatt taccgtgccc cagagaagaa
      181 agcaaccgag ggcgagggtt cagagcagaa gatccccggg gccaccaacc ggcgggtttg
      241 ggaactgtcc aaggccaatt cccactttgc cgccaccttc tatcagcatc tggcagacaa
      301 caagaatgac aaggacaaca ttttcctgtc acccctgagt atctccacag cttttgctat
      361 gaccaagctg ggtgcctgtg acaacaccct caagcagctg atggaggttt ttaagtttga
      421 taccatctct gagaagacat ctgatcagat ccactttttc tttgccaaac tgaactgccg
      481 actctatcga aaagccaata aatcctctga gttggtatca gccaaccgtc tttttggaga
      541 caaatccctt accttcaatg agacctacca ggacatcagt gagatggtat atggagccaa
      601 gctccagccc ctggacttca agggaaatgc agagcagtcc agagtgacca tcaaccaatg
      661 gatatccaat aagactgatg ggcgtatcac tgatgtcatt cccccagaag ccatcaatga
      721 gttcactgtg ctggtgctgg tcaacaccat ttacttcaag ggcctgtgga agtcaaagtt
      781 cagccctgag aacacaagga aggaactttt ctacaaggcc gatggggagt cgtgttcggt
      841 attcatgatg taccaggaag gcaagttccg ctatcggcgc gtggcagagg gcacccaggt
      901 gcttgagttg cccttcaagg gtgatgacat caccatggtg ctcatcctgc ccaagcttga
      961 gaagagcctg accaaggtgg aacaggaact caccccagag gtgctgcagg agtggctaga
     1021 tgagctggca gagacactgc tggtggtcca catgccccgc ttccgcatcg aggacagctt
     1081 cagcgtgaaa gagcggctgc aagacatggg ccttgaggac ctcttcagcc ctgagaagtc
     1141 caagctccca ggtattgttg cagaaggccc gagggacctc tatgtctcag atgcattcca
     1201 caaggcattt cttgaggtaa acgaggaagg cagtgaagca gcagcaagta ccgtcattgg
     1261 cattgctggc cgttcgctga accccagcag agtgaccttc aaggccaaca ggcccttcct
     1321 ggttcttatc agggaagttg ctctgaacac tattatcttc atgggcagag tagccaaccc
     1381 ttgtgttaac taaaatgtta tcctttatag ttcttcctat tttggtttgt gaatagaagt
     1441 aaaaataaat acaactactc ccatatctca caattacgaa tggactttgc cacctgaaac
     1501 gaagacaagg aaaggagaaa tggatagaga tgctgttggg catttggtaa aataggcttt
     1561 caattgttct ctaccagcga acacatctgg gtcaagaaag tgaagaaggg agatatgtca
     1621 ctgcttcatc ttgaaagatg gtaggcatcc tgagagggca gggggagct
//
LOCUS       XM_032647871            2232 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centromere protein L (CENPL), mRNA.
ACCESSION   XM_032647871
VERSION     XM_032647871.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2232
                     /gene="CENPL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761714"
     CDS             621..1661
                     /gene="CENPL"
                     /codon_start=1
                     /product="centromere protein L"
                     /protein_id="XP_032503762.1"
                     /db_xref="GeneID:116761714"
                     /translation="MDSYDVPESTPRQCASSRLKDYFIGATPLQKRLESVRKQTSFIP
                     TPPRRKIPQCSQLQEDVDPQKFAFLLHKQWTLYSLTPLYKFSYTNFKEYSKLLNAFIA
                     AEKQKGLAVEVGDDFNIKVIFSTLLGMKGTQRDPEAFLVQILSKSQLPSEHREGKVLW
                     TGWFCCIFGDSLLETVSEDFTCLPLFLANGAETNTAIIGTWFQKTFDCYFRPLAINAF
                     NLSWMAAMWTACKMDHYMATTEFLWSVPCSPQTLDISYAIHPEDAKALWDSVHKTPGE
                     VTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVL
                     AYLTELAVFQIE"
     misc_feature    1155..1595
                     /gene="CENPL"
                     /note="Kinetochore complex Sim4 subunit Fta1; Region:
                     CENP-L; pfam13092"
                     /db_xref="CDD:432969"
ORIGIN      
        1 aagattaaca ccccgcgatt aggaaagtag actttaatgg ttagagcgtt cccgtgccct
       61 cagttaaaat ggcaacctta gttgcttcac tgacttggaa tcgccgccat ggaggcgtcc
      121 agcgtcctgc cgcagggcga gtcgggaaac gattttaaac tgaggaggcg gctgaacgca
      181 aagttgctgc ttctcaacgg cgggattttg gagctggcgt tggcccctga ggcctcaggt
      241 ggagaggggc gctttgggat acactgtccc ttgccctttc cctccgtggg ctgaagcaga
      301 ctccgcagga gcgagggtcg cggagctggg tggctgagtc agcggaaatg tccctctcgg
      361 cgtgaagtgt cgggctcggc tggcgcctgc gggagcggag gtctccttac tgggcccgtt
      421 tgcgtccgtc gtgaacccag ctgtggtgga gcgagaggga atttgggagc gccagggttt
      481 cctccggact tactcttcgc tgtcattttg gcggctcttt tacttcaggg gatttcagtt
      541 ttgacgtagt tttggatcca gacttgaaga atgattcgtg aagggaatgg ttgacagcgt
      601 catcacggca tttattgacc atggattctt atgatgtacc agaatcgact cctagacagt
      661 gtgcatcctc aaggcttaaa gattacttta taggtgccac ccctctgcaa aaacgattag
      721 aatcagtcag gaagcagact tcatttatcc cgactccacc tcgaaggaaa attccccagt
      781 gttcacaact gcaggaagat gttgatcctc aaaagttcgc attccttctg cataaacaat
      841 ggactttata tagtttaact cccttatata aattctccta tactaatttc aaagagtatt
      901 ctaaacttct gaatgcattt attgctgctg aaaagcaaaa aggacttgct gtggaagtgg
      961 gagacgactt caacatcaaa gtgattttct ctactctcct gggaatgaaa ggaacacaga
     1021 gagaccctga agcatttctt gtccagattc tgtcaaaatc tcaattgcca tctgagcaca
     1081 gagaaggtaa agtgttgtgg actggttggt tctgctgtat atttggagac agtcttctgg
     1141 agactgtttc agaagatttc acctgtctac ccttattcct tgcaaatggt gcagagacta
     1201 atacagccat aattggaacc tggtttcaga aaacttttga ctgttacttc cgtcccttag
     1261 caatcaatgc gtttaatctt tcttggatgg ctgctatgtg gactgcatgc aaaatggacc
     1321 attatatggc tactactgag tttctttggt ctgtaccctg tagccctcaa actctggata
     1381 tttcttatgc catacatcca gaagatgcaa aagctttgtg ggacagtgtt cacaaaacac
     1441 ctggggaagt tacccaggag gaagttgact tattcatgga ctgcctgtat tcacatttcc
     1501 ataggcattt caaaattcat ttatcagcca caagattggt tcgtgtttca acatctgtag
     1561 cttcagcaca tactgatgga aaaataaaga ttttgtgtca taaatacctt attggagtgt
     1621 tggcatattt gacagaactg gcagtttttc aaattgagtg aggccttgtg gggactataa
     1681 gttatggatt atataccttt ttctcactga ctatctgcct aattgctatg ctgaggggga
     1741 ctgcaggaga aatgggcatc tgtgcatctg ttttcctcgc agtgccttgg agttacccag
     1801 atgaaagcca agaaggatct agaagaacaa agaaggtggt agtggatgaa ccacagccag
     1861 gtgctcgtgt aatatagtcc tggttatctg gcatgccagt ctgtagaata tgccgagtta
     1921 ttaatttgtt ggccatcttt ttattatgtc aaaattttta ggattcaaat gagatacctc
     1981 taatattgaa tatttctgat ttgcatcttt aaaaccttta atccctaatt ttaagcattt
     2041 tagacttgta ttcagagaga atttctatgt tctatagaca ttttcctagc atcattttgc
     2101 tgtagagaac cagcaatcaa aatcctcccc aaaggaaact aaagttacta tacatttttt
     2161 aagccactaa tatgcttctg tttttaatgc tgtttaattc ttattgcagt gttgaattaa
     2221 atattcactt tt
//
LOCUS       XM_032647883            3808 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761719
            (LOC116761719), mRNA.
ACCESSION   XM_032647883
VERSION     XM_032647883.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3808
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3808
                     /gene="LOC116761719"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 2 long SRA reads, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761719"
     CDS             22..636
                     /gene="LOC116761719"
                     /codon_start=1
                     /product="uncharacterized protein LOC116761719"
                     /protein_id="XP_032503774.1"
                     /db_xref="GeneID:116761719"
                     /translation="MSPRSGGGEGSKACGREASNQVRVEDREGGGAPGPCPGGRRKRA
                     GSCLEVGVCIWVCPGCRWGGGCPSRGPEGGAHEGAGPAAQPGPGPSGWKVSGCLEAGW
                     REVAERPRSRLRRRPGEAAPVQGSGTAVRGPSPVKEQHLPPGVEMGRNGPEHRPGSET
                     PHPLPRSGRRAGRKSLTLTPPPFPLPSAFRPSRPLPSLPLLLSP"
ORIGIN      
        1 gggaaaaagc agaggggcga aatgtcaccg aggagcgggg gcggagaggg gagcaaggcg
       61 tgcggccggg aagcgagcaa tcaggtgagg gtagaggacc gggaaggggg cggcgccccg
      121 ggaccctgtc caggcggtag gcgtaagcgg gcggggagct gcctagaggt gggtgtgtgt
      181 atctgggtgt gtccgggctg ccgttgggga gggggctgcc catcccgggg tcctgaggga
      241 ggggcccacg agggggcggg tccggcagct cagcccggcc cggggccaag cgggtggaag
      301 gtctccgggt gccttgaggc ggggtggagg gaggtggctg agcgccccag gagcaggctg
      361 cggcggagac cgggcgaggc ggccccagtg cagggcagcg ggactgctgt gcggggcccg
      421 agcccagtca aggagcagca cctacctccg ggggtggaaa tgggccggaa tgggccggaa
      481 caccgtcccg gaagtgaaac cccccacccc ctcccccgga gcgggcgacg tgccggaagg
      541 aaatcgctca cccttacacc gccccccttc cccctcccca gcgctttccg tccctcgcgc
      601 cccctcccct ctcttcccct cctcctcagt ccgtaggagg gtggggagcc ctgcgtcacg
      661 tgggcggtcg tgtccccgcc ccgcggcgcg gccagggggc ggggcctagg gggcgggctt
      721 agaggactgg acggaggtgc tgctgaagga ggaagagaat gagaggggga ggagttgaag
      781 ccgacgctgg cggaaagtct gcgtcatgac gtcatggaat agactcctta tatacaggcg
      841 cctggacgcc atctcggtct ttagaaggta cgagacggat cttcgtatgt gtgttttgtg
      901 tgctgttaag taagttctta gcctgagagg cctccagctc ttggcagtta ggatcttttt
      961 aagccggctg gcatttctag gccagtcgca ggccatcgca cggtttacaa ggtgaagatg
     1021 atggaggatt gcgagttggg tgcgggcgcg acctaattat actcctcggg ttgttgggcc
     1081 gaactgcgga aaaactccgg ctcgcgggct ctgcctctga tgaagcctgt gttggtaggg
     1141 acatctgaga ctgttgatga atgccaacgg ctctgatggc ggcgcgtgcc gagtcaccga
     1201 gtgggtcttt gttaaagacc tcggcccgag tctccttcag ctacttgctc tcaggaaggc
     1261 cacgtggttc tctaaaggct gcattcctca ctgcaccatt atttccgtca gtggttctta
     1321 attatgtgga atgctctcgc gcaattatgg gtggtgtaaa cgacttgctt acgtggtatg
     1381 gacacgacgt aaggtttaaa cttaggttta aaacaaaatg aatttttaaa atacctaatc
     1441 tttcctagga acggtgccag gcatgaatgc aatgtggctt ttgatggctt ctggtggaca
     1501 ggtaagtaac ggctaaatac agtgggaaga atgaaatctg cttagatgtg gtctttatgc
     1561 taagcctgtg atgttttaag agtagtgggc agaagggatt tctgaaaaat tctattctga
     1621 ggcttaactg cttaacgaca ttagtgatta acttagcagc acagcatgtt ttattggatt
     1681 attctgtcta ttttctagtt gtgtaccaaa gggatgagaa ccgctgctgg ggtgagttac
     1741 tgagattccc tgaaaaaggg aagttagatt gaaagtccag tgaatgtgcc acaatgatga
     1801 cagtttattt gctactcttg actgtgaggg tgacgagaat tattaccacc attatgctaa
     1861 ctgaggcaca caaaatggtg gtttagagaa catagagatt gcacccaagt ttatatgaaa
     1921 ctgtttcttc ccaggtctta aagcacaagc ttaatgctgt atccatgggc aaacaggtga
     1981 gaaacctttt ttatagtcca tgtttatcta gtacttcaaa ttcttttctt tttataaggg
     2041 gttacaaatt gccaagtcaa cgttggtgct tatattacgg ttttcctcac ctttttttca
     2101 aatgtaaatt gctgtacttt agttttatat ttagtatgag gggggatctg aggaaacaga
     2161 cactatgatg gttgcgtagt tcaacagact gaatcatgaa aaagataata ccatttgtct
     2221 gatgtatctg agttagtaaa acttttgctg atggtgtaag taaaatacca ctactaacta
     2281 gtttctcttt ttgtaggcac tatgcaggaa gttaagcact atgtaggcac taagctgaaa
     2341 gttcaagggg taagtaaaat cgtaactgaa aacattgctg acagggcaag catgacaaag
     2401 aatgccacta atggcttttt agggttgcct tctaatgcac aggaagcagt cttcccataa
     2461 agtgtttgaa cagtgtgctg aatacattaa ataaaagcca gatccttgta ctgtcttaat
     2521 ttgtgagagc agcctgtgtg atgataaagc aaatactgac tgaacatgaa ggtcttaatt
     2581 agctctatct gatttcaggc actttttaga tttgtgggga gaaaattgat ttggccgtta
     2641 taaaaccact ctcatttctt aggtggactt gaatccttga catgtccggg ccaacttttt
     2701 ggtaagcatt aatgttaaaa acaatttagt aacctcaact gttaactgag aatgctgata
     2761 aagtggaatg tttaactacc aagctaattt cctatgtctg gtttgcaagt gcatgttgag
     2821 catgccctga acagggtttt tgtaatgatg ttgagcaaat gtctgacctg aaatgagcat
     2881 gtagacaaat ctaacactga agaaccctgt gacaaatgtg agaagaattt aacaataaga
     2941 ttgacatttt aatgaaaggt gtatcatttc tctcatagat cctgggtaca cgtttttatc
     3001 catggatggc ttgcttgggg taagacatga aaacagttct ttggctcctg gcatttgggt
     3061 ttatattccg aaaatgtgct ggtcttagta gttgttgacc tatgttagtg ttttctggtg
     3121 ttggactgtt gagaaataaa taggctttag tattaagctg ttgtgaagtg tgtttaaaga
     3181 aatacttctt tgcaggtgca aattttggag atcttttata taaaggtatg tatgttttat
     3241 cagtcttacc tagttactga gcaagatgct gttagtgatg attttttaaa aattaaacag
     3301 atgggaatct ctctgacaaa gaatgaagat ttttaaatac tgaaacggta tctggaaaat
     3361 ttttgaaatc tacctattaa ctacctattc agtttgatta aatttcatta aatttttgca
     3421 ggtgacaaga gaggtactgg ctacaacgca gggagcaaga ccttttaagc aaaggtatag
     3481 aagtctcaag tttggtttct gtgttttgtg gtataaagcc gatacaatga tgataacata
     3541 gttcagcaga ctaacagtga tgagcaaata ctgtctttcg ctcctatctg atgtatctgg
     3601 ctgcaacaat tctgtttata tacccatgaa agtggaaacc agccactgtc tcacagaaat
     3661 attcagggat ttggataagt gtaacagatg ttctgtactg ttaatttcag gattaggaat
     3721 ttacattttg gataagaaca ggctaacgtg aggaaatttt tatggcatat actatagatt
     3781 acaccagaat gaataattta gcggatta
//
LOCUS       XR_004352091            4086 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761735
            (LOC116761735), transcript variant X1, ncRNA.
ACCESSION   XR_004352091
VERSION     XR_004352091.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4086
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4086
                     /gene="LOC116761735"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 6 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761735"
     ncRNA           1..4086
                     /ncRNA_class="lncRNA"
                     /gene="LOC116761735"
                     /product="uncharacterized LOC116761735, transcript variant
                     X1"
                     /db_xref="GeneID:116761735"
ORIGIN      
        1 tcttctgatc tgacggatct tcgtatgtgt gttttgtgtg ctgttaagta agttcttagc
       61 ctgagaggcc tccagctctt ggcagttagg atctttttaa gccggctggc atttctaggc
      121 cagtcgcagg ccatcgcacg gtttacaagg tgaagatgat ggaggattgc gagttgggtg
      181 cgggcgcgac ctaattatac tcctcgggtt gttgggccga actgcggaaa aactccggct
      241 cgcgggctct gcctctgatg aagcctgtgt tggtagggac atctgagact gttgatgaat
      301 gccaacggct ctgatggcgg cgcgtgccga gtcaccgagt gggtctttgt taaagacctc
      361 ggcccgagtc tccttcagct acttgctctc aggaaggcca cgtggttctc taaaggctgc
      421 attcctcact gcaccattat ttccgtcagt ggttcttaat tatgtggaat gctctcgcgc
      481 aattatgggt ggtgtaaacg acttgcttac gtggtatgga cacgacgtaa ggtttaaact
      541 taggtttaaa acaaaatgaa tttttaaaat acctaatctt tcctaggaac ggtgccaggc
      601 atgaatgcaa tgtggctttt gatggcttct ggtggacagg taagtaacgg ctaaatacag
      661 tgggaagaat gaaatctgct tagatgtggt ctttatgcta agcctgtgat gttttaagag
      721 tagtgggcag aagggatttc tgaaaaattc tattctgagg cttaactgct taacgacatt
      781 agtgattaac ttagcagcac agcatgtttt attggattat tctgtctatt ttctagttgt
      841 gtaccaaagg gatgagaacc gctgctgggg tgagttactg agattccctg aaaaagggaa
      901 gttagattga aagtccagtg aatgtgccac aatgatgaca gtttatttgc tactcttgac
      961 tgtgagggtg acgagaatta ttaccaccat tatgctaact gaggcacaca aaatggtggt
     1021 ttagagaaca tagagattgc acccaagttt atatgaaact gtttcttccc aggtcttaaa
     1081 gcacaagctt aatgctgtat ccatgggcaa acaggcacta tgcaggaagt taagcactat
     1141 gtaggcacta agctgaaagt tcaaggggtg gacttgaatc cttgacatgt ccgggccaac
     1201 tttttgatcc tgggtacacg tttttatcca tggatggctt gcttggggta agacatgaaa
     1261 acagttcttt ggctcctggc atttgggttt atattccgaa aatgtgctgg tcttagtagt
     1321 tgttgaccta tgttagtgtt ttctggtgtt ggactgttga gaaataaata ggctttagta
     1381 ttaagctgtt gtgaagtgtg tttaaagaaa tacttctttg caggtgcaaa ttttggagat
     1441 cttttatata aaggtatgta tgttttatca gtcttaccta gttactgagc aagatgctgt
     1501 tagtgatgat tttttaaaaa ttaaacagat gggaatctct ctgacaaaga atgaagattt
     1561 ttaaatactg aaacggtatc tggaaaattt ttgaaatcta cctattaact acctattcag
     1621 tttgattaaa tttcattaaa tttttgcagg tgacaagaga ggtactggct acaacgcagg
     1681 gagcaagacc ttttaagcaa aggtatagaa gtctcaagtt tggtttctgt gttttgtggt
     1741 ataaagccga tacaatgatg ataacatagt tcagcagact aacagtgatg agcaaatact
     1801 gtctttcgct cctatctgat gtatctggct gcaacaattc tgtttatata cccatgaaag
     1861 tggaaaccag ccactgtctc acagaaatat tcagggattt ggataagtgt aacagatgtt
     1921 ctgtactgtt aatttcagga ttaggaattt acattttgga taagaacagg ctaacgtgag
     1981 gaaattttta tggcatatac tatagattac accagaatga ataatttagc ggattatttt
     2041 tgatagtcat ttctcagagc agttttagat tcatagcaaa attgaacagt aggttcccat
     2101 atagcatcct ccccatcatc atctaccacc agagtgggac ttaaaatttt gaacctatgt
     2161 tgagttgaca cattttttca cccagagtcc agtagtacat tggggttcac tcatggtgtt
     2221 gtacattctc tgggtttgga caaatgtatt gtgacaaaga tccatcttgc acagaatagg
     2281 ttcactgccc tagaattctt tgaaaaattt aaaaatcggc tacaaaaaat gggagaaagg
     2341 gcaaatttta aacaaggctt ttatttttta ttttcaaaca ggcacatgtg ttaccctgaa
     2401 gatttcaagg tcagtcagtc tatggtatat atggtgagtt agaatgtaac cagtgatgtg
     2461 atgattctgc caaatgaata gaatgatatc actgtaaaac cgttccattt tgattctgag
     2521 gttactttat caacaagtat cacaagtttt ttcccttcta ctgtgatttg acatatatgg
     2581 tctttatttt cagggcattt atgacagcag tcatgcagct taacagttga caggcagctg
     2641 gatggatgct catgggatag gagaggaaac aactttcaat ttttttaaaa gcctattgta
     2701 tttattggcc atgctgcaca gcatgtagga tcttagttcc cccaccaggg attgaacccg
     2761 tgccccctgc agtggaagcg cagagcccta accactggac caccagggaa ttctccaact
     2821 ttgaatttta ataaatattt atgaaccatc tgaagtgtgc tcatttcaat ttaatgagat
     2881 gaacgaaggg aaataggaca tttttgtaat tgacccaacg gcatattttt tgcagaaatt
     2941 ttctgattta atgtgaagtg cctgggtcag ttagtcacag ttgaaaacca accattggaa
     3001 ttgtagcctg aggctggaaa agtgaaagat gagcttgaac cacctttgtg ctgtgcaaga
     3061 aagttccgca ggaatgaaaa tgttgaaaaa acacaggaac ttcaatgatc cttaatttcc
     3121 aaaatgggca attaagtcat taagatacat tgttgaaaat tgcagagaaa agcagaaact
     3181 cttttaatgt taagtggtag gagtgcagaa attgggaaaa atctccattt gctgtagtaa
     3241 gcaccaggtt tcagtgctat ctaggagatg catattgaaa aacctagaac agtgagatct
     3301 tttaagaatg agatcagtaa tactgtggtt ataatgtcct tcagaaaatg ggtactggtt
     3361 ttgcaaattt ctggtggggg gggggaatgt ggtttgttca agttaatgag aaaattagtg
     3421 aactggtgag ttgctggtta gttcctaaat accaaggaaa ccattagctc tgggaacacc
     3481 taaaaagtaa atgcctgcca atcaaatttc agcttgcttt ctaatttggc atttcaggtg
     3541 tgtaggaaca ttaaattggg gttttaagtc ttagcatgcc aaaacgttta cttaaactcc
     3601 cactgactga gacactattc taaaaactag tcaaaacacc aatttatata aaagcaagtt
     3661 gacatttttt tttggctgtg ctgtgaaacg tgggatctct cttccccctg agattgaatc
     3721 cgggccacag cagtgaatgc acctaatcct aaccaccaga ccaccaggaa actccctgcg
     3781 agttgaccaa atattaaagt gttagttacc ctttggcatc tgggggggtt ggttccaggt
     3841 ccccctgtgg ataccaaaat ccatgggtgc tcgggtctct tagaggtata ataactatag
     3901 tgggcctact gatctcccat gccagcttgg attatttcat attagaaaat ttctgtcaac
     3961 attgtatgtg ctattactca tcaaaattct tcatgaaatc taagaggagc tatttcttga
     4021 atattctaaa acatgacagt ttggattagc ctgcagattt tcagggctta aaagatatat
     4081 aaaaag
//
LOCUS       XR_004352092            3149 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761735
            (LOC116761735), transcript variant X2, ncRNA.
ACCESSION   XR_004352092
VERSION     XR_004352092.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3149
                     /gene="LOC116761735"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 4 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761735"
     ncRNA           1..3149
                     /ncRNA_class="lncRNA"
                     /gene="LOC116761735"
                     /product="uncharacterized LOC116761735, transcript variant
                     X2"
                     /db_xref="GeneID:116761735"
ORIGIN      
        1 tcttctgatc tgacggatct tcgtatgtgt gttttgtgtg ctgttaagaa cggtgccagg
       61 catgaatgca atgtggcttt tgatggcttc tggtggacag ttgtgtacca aagggatgag
      121 aaccgctgct ggggtcttaa agcacaagct taatgctgta tccatgggca aacaggcact
      181 atgcaggaag ttaagcacta tgtaggcact aagctgaaag ttcaaggggt ggacttgaat
      241 ccttgacatg tccgggccaa ctttttgatc ctgggtacac gtttttatcc atggatggct
      301 tgcttggggt aagacatgaa aacagttctt tggctcctgg catttgggtt tatattccga
      361 aaatgtgctg gtcttagtag ttgttgacct atgttagtgt tttctggtgt tggactgttg
      421 agaaataaat aggctttagt attaagctgt tgtgaagtgt gtttaaagaa atacttcttt
      481 gcaggtgcaa attttggaga tcttttatat aaaggtatgt atgttttatc agtcttacct
      541 agttactgag caagatgctg ttagtgatga ttttttaaaa attaaacaga tgggaatctc
      601 tctgacaaag aatgaagatt tttaaatact gaaacggtat ctggaaaatt tttgaaatct
      661 acctattaac tacctattca gtttgattaa atttcattaa atttttgcag gtgacaagag
      721 aggtactggc tacaacgcag ggagcaagac cttttaagca aaggtataga agtctcaagt
      781 ttggtttctg tgttttgtgg tataaagccg atacaatgat gataacatag ttcagcagac
      841 taacagtgat gagcaaatac tgtctttcgc tcctatctga tgtatctggc tgcaacaatt
      901 ctgtttatat acccatgaaa gtggaaacca gccactgtct cacagaaata ttcagggatt
      961 tggataagtg taacagatgt tctgtactgt taatttcagg attaggaatt tacattttgg
     1021 ataagaacag gctaacgtga ggaaattttt atggcatata ctatagatta caccagaatg
     1081 aataatttag cggattattt ttgatagtca tttctcagag cagttttaga ttcatagcaa
     1141 aattgaacag taggttccca tatagcatcc tccccatcat catctaccac cagagtggga
     1201 cttaaaattt tgaacctatg ttgagttgac acattttttc acccagagtc cagtagtaca
     1261 ttggggttca ctcatggtgt tgtacattct ctgggtttgg acaaatgtat tgtgacaaag
     1321 atccatcttg cacagaatag gttcactgcc ctagaattct ttgaaaaatt taaaaatcgg
     1381 ctacaaaaaa tgggagaaag ggcaaatttt aaacaaggct tttatttttt attttcaaac
     1441 aggcacatgt gttaccctga agatttcaag gtcagtcagt ctatggtata tatggtgagt
     1501 tagaatgtaa ccagtgatgt gatgattctg ccaaatgaat agaatgatat cactgtaaaa
     1561 ccgttccatt ttgattctga ggttacttta tcaacaagta tcacaagttt tttcccttct
     1621 actgtgattt gacatatatg gtctttattt tcagggcatt tatgacagca gtcatgcagc
     1681 ttaacagttg acaggcagct ggatggatgc tcatgggata ggagaggaaa caactttcaa
     1741 tttttttaaa agcctattgt atttattggc catgctgcac agcatgtagg atcttagttc
     1801 ccccaccagg gattgaaccc gtgccccctg cagtggaagc gcagagccct aaccactgga
     1861 ccaccaggga attctccaac tttgaatttt aataaatatt tatgaaccat ctgaagtgtg
     1921 ctcatttcaa tttaatgaga tgaacgaagg gaaataggac atttttgtaa ttgacccaac
     1981 ggcatatttt ttgcagaaat tttctgattt aatgtgaagt gcctgggtca gttagtcaca
     2041 gttgaaaacc aaccattgga attgtagcct gaggctggaa aagtgaaaga tgagcttgaa
     2101 ccacctttgt gctgtgcaag aaagttccgc aggaatgaaa atgttgaaaa aacacaggaa
     2161 cttcaatgat ccttaatttc caaaatgggc aattaagtca ttaagataca ttgttgaaaa
     2221 ttgcagagaa aagcagaaac tcttttaatg ttaagtggta ggagtgcaga aattgggaaa
     2281 aatctccatt tgctgtagta agcaccaggt ttcagtgcta tctaggagat gcatattgaa
     2341 aaacctagaa cagtgagatc ttttaagaat gagatcagta atactgtggt tataatgtcc
     2401 ttcagaaaat gggtactggt tttgcaaatt tctggtgggg ggggggaatg tggtttgttc
     2461 aagttaatga gaaaattagt gaactggtga gttgctggtt agttcctaaa taccaaggaa
     2521 accattagct ctgggaacac ctaaaaagta aatgcctgcc aatcaaattt cagcttgctt
     2581 tctaatttgg catttcaggt gtgtaggaac attaaattgg ggttttaagt cttagcatgc
     2641 caaaacgttt acttaaactc ccactgactg agacactatt ctaaaaacta gtcaaaacac
     2701 caatttatat aaaagcaagt tgacattttt ttttggctgt gctgtgaaac gtgggatctc
     2761 tcttccccct gagattgaat ccgggccaca gcagtgaatg cacctaatcc taaccaccag
     2821 accaccagga aactccctgc gagttgacca aatattaaag tgttagttac cctttggcat
     2881 ctgggggggt tggttccagg tccccctgtg gataccaaaa tccatgggtg ctcgggtctc
     2941 ttagaggtat aataactata gtgggcctac tgatctccca tgccagcttg gattatttca
     3001 tattagaaaa tttctgtcaa cattgtatgt gctattactc atcaaaattc ttcatgaaat
     3061 ctaagaggag ctatttcttg aatattctaa aacatgacag tttggattag cctgcagatt
     3121 ttcagggctt aaaagatata taaaaagta
//
LOCUS       XM_032647928            5740 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oviductal glycoprotein 1 (OVGP1), mRNA.
ACCESSION   XM_032647928
VERSION     XM_032647928.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3763              VOSU01000011.1     99357001-99360763   c
            3764-3968           VOSU01000011.1     99356374-99356578   c
            3969-4025           VOSU01000011.1     99355348-99355404   c
            4026-4191           VOSU01000011.1     99353509-99353674   c
            4192-4316           VOSU01000011.1     99352900-99353024   c
            4317-4425           VOSU01000011.1     99351503-99351611   c
            4426-4611           VOSU01000011.1     99351217-99351402   c
            4612-4728           VOSU01000011.1     99349453-99349569   c
            4729-4864           VOSU01000011.1     99348072-99348207   c
            4865-5316           VOSU01000011.1     99346635-99347086   c
            5317-5317           "N"                1-1
            5318-5469           VOSU01000011.1     99346483-99346634   c
            5470-5470           "N"                1-1
            5471-5740           VOSU01000011.1     99346213-99346482   c
FEATURES             Location/Qualifiers
     source          1..5740
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5740
                     /gene="OVGP1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:116761743"
     CDS             3499..5571
                     /gene="OVGP1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: oviduct-specific
                     glycoprotein"
                     /protein_id="XP_032503819.1"
                     /db_xref="GeneID:116761743"
                     /translation="MVVPVQSMCVYVWCLLKWKGDEIDLASPAQCGEEERGKGVCVSI
                     CLSGWVYSELEGVLGCVTPGVPVNLRVIPPLCPAGLVLALKHHNGAAHKLVCYFTNWA
                     FSRPSPASILPRDLDPFLCTHLVFAFASMNNNQIVPKNPQDEKILYPEFNKLKERNRE
                     LKTLLSIGGWNFGTSRFTTMLSTFANRQNFVNSVIALLRTHGFDGLDLFFLYPGLRGS
                     PRHDRWTFVFLLEELLLAFRKEAQLTMRPRLLLSAAVSGDPRVIQKAYDVRLLGRLLD
                     FISVLSYDLHGSWEKFTGHNSPLFSVPKDPKSSAYAMNYWRKLGAAPEKLLMGLPTYG
                     RTFRLLKASKNELWAEAVGPASPGKYTKQAGFLAYYEICSFIWRAKRRWIDDQYVPYA
                     YKGQEWVGYDDAVSFSYKAFFIMREHFGGAMVWTLDLDDVRGTFCGTGPFPLVYTLNN
                     LLVKAEFSSTPPPKFWLSTAVNSSRIGSERLTVIKDLTTDLGILPPGGEAVATETHRK
                     SETMTTVPRGGLVTPTRETLSFGKHPLAAEWKTETPGEETMTPVGQAVTPGGITVAPM
                     LLQTGEKIMPPRRKAEAPENMTIPSGKMTVTPAGQTETLEXENLTSEVDPEPLVGYFG
                     LHTEAENWMLLSGPVISPPGHTPLAFDKPFVPTXWNHSSDDSVTLPVSPLSLKKENPE
                     NSAVDRGS"
     misc_feature    3778..4854
                     /gene="OVGP1"
                     /note="This conserved domain family includes a large
                     number of catalytically inactive chitinase-like lectins
                     (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1,
                     oviductin, and AMCase (acidic mammalian chitinase), as
                     well as catalytically active...; Region:
                     GH18_chitolectin_chitotriosidase; cd02872"
                     /db_xref="CDD:119351"
     misc_feature    order(3787..3789,3799..3801,4006..4011,4123..4125,
                     4129..4134,4267..4272,4339..4341,4345..4350,4363..4365,
                     4495..4497,4501..4503,4585..4587,4771..4773)
                     /gene="OVGP1"
                     /note="active site"
                     /db_xref="CDD:119351"
ORIGIN      
        1 attgggaaac aatgctctag tctatctcct tcattttaga gatgtggtaa agctatttca
       61 agtttacact gatctggagt caacactctt tttgttctta tgttattcaa ccaattgctt
      121 ttgttcgagt catacatctc cagttcttcc acatgagaat catgaaaagt ttggtcaaat
      181 gctttgttaa acccacagcc cttcacgtct gtgatcttgc cttcatctag ttgagtgtgt
      241 agaatgtgga agaggttgtg ctgcggtggg gatttcttca gcaagccagc taaagggtat
      301 tgtacgtgcc ttttctcatt tcgtgagaac aggctgagca ttgggaagga gtgttttcca
      361 agcatctggg tgggtgtgag aaaatacaaa gcaacggttg tactattgac agcgggaacc
      421 caaggaggag gattgggagc gagcagtgca acatggcaca gtgactttca acctgaccct
      481 cactcagcat ttcactgttc atcatctcct acacacagag gcttagttgc caattctttg
      541 gcacagtcat ccctgaatga agcagacatc actcctgggc atccattgtt atatcttgcc
      601 attcttctca gcatcattag tcacttttga ctgtatggaa gagggaggtc tgggatccag
      661 ccttgcccac tgcagcagac taggagccca gaacactgag ccatgtgcag gtgaaggagg
      721 ttcagttggc aggcagatct ggccctttga tgggtacagc atgaacagct agtgcccctg
      781 gcaggagtct gggtggaagg gcacaaacct cgtgggaaat ctcagtgatg tggtatctgg
      841 ggagcaggag gtggggtgaa gggaggctta gaagcagaga gaagcagaca ttcacatcag
      901 ggtggtctta aaagacaggc agtaaggccc caggagcctg gcaagaatga gtcaggaccc
      961 aggccctagg agccaactgt ggtgcctaca gttataaacc aggaagagaa atcaaagcag
     1021 agacccagaa acaagaccta aggcacatgg gctgggaatt gggaaacaag taagagcttg
     1081 gtcactagag ttagaaaccg caccaggggt aatctaccaa tggtgcgaga tgttgccaaa
     1141 tctaatccag cactgcattt atgaggctta agtatctcct gattctgatt aatattagct
     1201 gaaggtatgg agggtggcat tgaacgtgca ggtgagacct aatgatagta cagagcgggg
     1261 aattggttct caaggttgtt tggaaacaaa actcatgtgc tttactctgc actcatccaa
     1321 gagatataag agagggacac acactggctc tgaggagtgt gatccatgtg ttcacgaaac
     1381 gagaagcttc ttgagcagaa actatgtctt catcaccaca aacatagggt ggctatcagg
     1441 gcctggcccg tgctcaatga atattcattg aatacataaa ggaaggcaaa gagggctgaa
     1501 caaatggaga cacagcctct gttgggtggg gtattctctg gctttctcaa gtttcagtga
     1561 aatatccttg ccctaaacat tctataccaa cttattgttc ttattccatg atatccaagc
     1621 aacctgctga tacaagttaa actttcctag tttcttcgta ttggaaatga agtgagttca
     1681 accactagcc attgttattt gtcagtgtca tttattatat tgacatctgg ttagcacctc
     1741 agtggcgcgt ggattaggtg agctgtgtga gtctccaaga ggatgaacgt agtggatata
     1801 ctgagaacat ccagtttctg gtcccccctg attgaggttc acaccctgaa atatgggacc
     1861 tactcatgat ctgagagcct cgatagcaga aaagaaaact ggtagatcat gaaaacactg
     1921 gagtatagat ctatgttatt tatccttcat attattgtta tattttttaa aaattggctc
     1981 ccaggtgtcc aaaattgggt tcattatatt ccttaagttc atgacacctc tcatgacagt
     2041 gtcaccattg gctcatatac tggctcaaac attgttgact caaacaaaaa ttccgatttc
     2101 tgtcttctct tgggaaattg aagaatcctc caaaagattg gttctgtttc tctgcaaggc
     2161 agaaattagt ggctactcag agttctgtcc ctatccatac caatctctgt tgtctcctga
     2221 taagagaagt tgaagtgtat cactgggctt gaaccgttat tctaatcaag tggaaagtaa
     2281 actattctct tgggtccact tcaccaattt acattacctg cctgtcagca tttgagtttg
     2341 agaaccctgc tctgggagga aacttctgtg ccatccctaa taactaccac cattcactga
     2401 gccctcacta taggcaaagc actgaactaa cagtttttca cacgttctct ctttattcat
     2461 ataaaaccct atgaggtaaa ttcaagtgtt atctccgttt tacaggtgtg gaaactgaag
     2521 ctcaaagagc taaataactg cccaagatga taaaacttct aatttttgac actgggattc
     2581 aaactttggc ctgcctgagt ccatagccgg gccttttttg tttgttcgtt aacatcttta
     2641 ttgcagtata attactttac aatggtgtgt tagtttctgc tttataacaa agtgaatcag
     2701 ttatacatat acatatgttc ctgggccttt taaactttac attacacggc ttttctaacc
     2761 actaatctta taacaataga attactgctg cccttcagtg tttcttcctc atactcagtc
     2821 cacatggggc tgaattccag gaagagggct gagcactgcc ctgccctcgc cagggcccat
     2881 ggtggacacc cactccgtgc cagtgtcaga gggagttgtt gctttgttgg acctgagagc
     2941 tatagctctg ctgggcggga ggacgggaga tgctggggtc actgtgactc tggggcagct
     3001 gcccgttaat cactattcct ggttttgtgt gttttagctg ggctatccca gtgttgtccc
     3061 agggtcatac ctggggaagt gcatataaag gggctagagg tctagacctg cagctctcag
     3121 accacggaga tggggaagct gttgctttgg gttggtgagt gtggtgggtc ccagccccac
     3181 aatgtctctt cgttcaggag gggccaggct tcataagctc attgtctcgc tggttcctgg
     3241 gaagcatcct gcgactcggg gccctggatt aggtagaggt gggacaggac acagtgaagg
     3301 gccagagggg cccagggagg agagatcaga gcagtggtgg tgccctggct gcacattaaa
     3361 catttttatg cctggcttcc acctcagacc agttcattca gaatctctgg gggaggagcc
     3421 aggatatcac tacttttaaa ttagcatcca gggttgagaa ccattgacct agagcttttg
     3481 ctgggacttc taaatgtcat ggttgtccct gtgcaaagca tgtgtgtata tgtatggtgt
     3541 ttactgaagt ggaaaggaga tgagatagat ctggcttcac ctgctcagtg cggagaagag
     3601 gaaagaggga agggtgtgtg tgtctccatt tgcttgagtg ggtgggtgta ttcagaactg
     3661 gagggtgtgc tggggtgtgt cactccgggt gtgcctgtga atctgcgtgt gattcctcct
     3721 ttgtgtcctg cagggctggt tcttgcgctg aaacaccaca atggtgctgc ccacaaactg
     3781 gtgtgttatt tcaccaactg ggcctttagt cggcccagcc ctgcttcgat cctgccccgg
     3841 gacctggacc cctttctctg cacccacctg gtatttgcct ttgcctcaat gaacaacaat
     3901 cagattgttc ctaagaatcc ccaggatgag aaaatcctct acccagagtt caacaagctc
     3961 aaggagagga acagggagct gaaaacactg ctgtccatcg gggggtggaa cttcggcaca
     4021 tcgaggttca ccacgatgct gtccacattc gccaaccggc agaattttgt caattcagtg
     4081 atagccctcc tgaggacaca tggctttgat ggtctggacc tcttcttctt gtaccctgga
     4141 ctcagaggca gccccaggca tgaccgctgg acctttgtct tcttacttga agagctcctg
     4201 cttgctttca ggaaggaggc gcagctcacc atgcgtccaa ggctgctgct ctccgctgct
     4261 gtctctgggg atccccgtgt catccaaaaa gcgtatgatg tgcgcctcct gggaagacta
     4321 ctggatttca tcagtgtctt gtcttatgac ttacatggaa gctgggaaaa gttcacagga
     4381 cacaatagcc cgctgttctc tgtgcccaag gaccctaaat cttcggcata tgccatgaac
     4441 tactggcgaa agcttggggc agcacctgag aagctcctta tggggctccc cacctatgga
     4501 cgtacttttc gcctcctcaa agcctctaag aatgagttgt gggcagaagc tgtgggaccg
     4561 gcatctccag ggaagtacac caagcaagct ggcttcttgg cttattatga gatttgctcc
     4621 ttcatctgga gagcgaagag gcgctggatt gatgatcagt atgtcccata tgcctacaag
     4681 gggcaggagt gggttggcta tgatgatgcc gtcagcttca gttacaaggc gtttttcata
     4741 atgagagagc attttggggg ggccatggtg tggacattgg acctggatga cgtcaggggc
     4801 actttctgtg gaactggccc tttccccctt gtctacacat tgaataatct cctggtgaag
     4861 gctgagttca gctcaactcc tccaccaaaa ttttggctct caactgctgt gaattcttca
     4921 agaattggct cagaaaggct gactgtgatc aaggatttga ccactgattt ggggatcttg
     4981 cccccaggag gggaggctgt ggccaccgag acccacagaa agtctgaaac tatgaccaca
     5041 gtccccagag gtgggcttgt gacccctaca agggaaactc tgtcctttgg aaaacacccc
     5101 ctagctgcag aatggaagac ggaaacccct ggagaggaga ccatgacccc tgtgggccag
     5161 gctgtgaccc ctggagggat aactgtggct cctatgcttc ttcagactgg agagaaaatc
     5221 atgcccccaa gaaggaaggc tgaagcccct gagaatatga ccatcccctc aggaaagatg
     5281 acagtcaccc ctgctgggca gactgagact cttgagnaag agaatttgac ttctgaggtg
     5341 gaccctgaac ccctggtggg ttactttggt cttcacacag aagctgaaaa ctggatgctg
     5401 ctctctggtc ctgtcatctc gcccccagga cacactcctc ttgcttttga caagcccttt
     5461 gttcccactn gatggaatca ttcctctgat gactcagtaa cccttccagt gagtcctctc
     5521 tctctaaaga aggaaaatcc agagaactct gctgtggacc gaggatccta agatctgttg
     5581 ttggcagaaa ctggagaaag tccttgcctt ttcttctagg tcccctgacc aaagctgcct
     5641 gtgcccagcc attgataaac cattcttggg gcaaagcagg ccccaggcca cactgagtta
     5701 atctctcttc tgttgaataa actggaagca taagaattca
//
LOCUS       XM_032647949             777 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein pitchfork-like (LOC116761755),
            mRNA.
ACCESSION   XM_032647949
VERSION     XM_032647949.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..777
                     /gene="LOC116761755"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 Proteins"
                     /db_xref="GeneID:116761755"
     CDS             35..616
                     /gene="LOC116761755"
                     /codon_start=1
                     /product="protein pitchfork-like"
                     /protein_id="XP_032503840.1"
                     /db_xref="GeneID:116761755"
                     /translation="MCFNKAETLVNCSFGTCQQRRLFPHFHPPNLLGNKFLPLRGAPH
                     RGPGCYYIAEDRYGLAYNLSKIPTSIKGYAFGARTAVRFKPISKDMTPYPGMYQTVGP
                     QEQTHKQNFAPFNALLPRFRTYSKDACYPGPDTYNPEIKAPKKITWPMKFGSPDWAQV
                     PCLQKRTLKAELPTDKDFRKHRNRVAYLSLYYN"
ORIGIN      
        1 atacacaaac gctggtccta gtggcactgg cacaatgtgc ttcaacaaag cagagacgct
       61 ggttaactgc tcctttggaa catgtcaaca gaggaggctc tttcctcact tccacccccc
      121 aaacttgttg gggaacaagt ttctccctct taggggagcg ccccacagag ggcctggatg
      181 ttactacata gcagaagata ggtatggttt ggcatacaac ctctctaaga tcccgaccag
      241 tataaaagga tatgcttttg gagccagaac agctgtgagg tttaagccaa tcagcaagga
      301 tatgacacct tatccaggca tgtaccaaac agtcggtcct caggagcaaa cacacaaaca
      361 aaattttgct ccatttaatg ccttgttgcc tcgatttagg acatactcta aggacgcttg
      421 ttatcctggc cctgacacat ataacccaga gataaaggca cccaaaaaaa tcacctggcc
      481 aatgaaattt ggatctccag actgggccca ggttccatgt ctacagaaaa gaaccctgaa
      541 agctgagctg cccacagaca aagactttag aaagcatcgg aaccgtgtgg cctacctaag
      601 cctgtattac aactgaaaag ctgtgactac cttcacgtgt tcctcctgac cacagaccct
      661 ccaggattga ggacagagct gcttttgtcc ttctgcattg ctctggcccg cctgtctgcc
      721 agcatggggc acagggaggg gcaaggggct cataactact atataacagc ataaaga
//
LOCUS       XM_032647962             901 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hippocalcin (HPCA), transcript variant
            X1, mRNA.
ACCESSION   XM_032647962
VERSION     XM_032647962.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..901
                     /gene="HPCA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 30 Proteins, and 42%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761759"
     CDS             41..622
                     /gene="HPCA"
                     /codon_start=1
                     /product="neuron-specific calcium-binding protein
                     hippocalcin isoform X1"
                     /protein_id="XP_032503853.1"
                     /db_xref="GeneID:116761759"
                     /translation="MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILN
                     VDEFKKIYANFFPYGDASKFAEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLM
                     WAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNN
                     DGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQF"
     misc_feature    161..565
                     /gene="HPCA"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; Region: FRQ1; COG5126"
                     /db_xref="CDD:444056"
ORIGIN      
        1 ggtgtctccg cgtcgctggg tgggacttgg ctcggtggcc atgggcaagc agaacagcaa
       61 gctgcggccc gagatgctgc aggacctgcg ggagaataca gagttctcag agctggagct
      121 gcaggagtgg tacaagggct tcctcaagga ctgccccacg ggcatcctca acgtggatga
      181 gttcaagaag atctacgcca acttcttccc ctacggtgac gcctccaagt tcgcggagca
      241 tgtcttccgc acctttgaca ccaacagcga tggcaccatc gacttccggg agttcatcat
      301 cgcactgagt gtgacctcac gtggccgcct ggagcaaaag ctcatgtggg ccttcagcat
      361 gtacgacctg gatggcaacg gctatatcag ccgtgaggag atgctggaga tcgtgcaggc
      421 catttacaag atggtttcgt ctgtgatgaa gatgccggag gacgagtcga ccccggaaaa
      481 gaggactgag aagatcttcc gccaaatgga cacaaacaac gacggcaagc tgtccttgga
      541 ggagttcatc cgcggggcca aaagcgaccc gtccatcgtg cgcctgctgc agtgcgaccc
      601 cagcagcgcc tcccagttct gagcgaggag ccaggtttcc cctccctgcc ttcactggcc
      661 ctctcccagc tctcagcttc ctcgcccttg tgtctgtcca ggctgggggt cagattgcca
      721 cccccagggt ctgcactctg aggggcctat ggagaaagga accctgcagc gccccccccc
      781 ccccaaggcc caagccagca agtcgttagc acccccctat ccgggaagca atatctccct
      841 tcggcaatga taaagacaca ggctctggct tggtctgcct ctcagtcagc cctcccttac
      901 c
//
LOCUS       XM_032647969             596 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hippocalcin (HPCA), transcript variant
            X2, mRNA.
ACCESSION   XM_032647969
VERSION     XM_032647969.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..596
                     /gene="HPCA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 63% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761759"
     CDS             1..366
                     /gene="HPCA"
                     /codon_start=1
                     /product="neuron-specific calcium-binding protein
                     hippocalcin isoform X2"
                     /protein_id="XP_032503860.1"
                     /db_xref="GeneID:116761759"
                     /translation="MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILN
                     VDEFKKIYAKAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAK
                     SDPSIVRLLQCDPSSASQF"
     misc_feature    <121..306
                     /gene="HPCA"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     Region: EFh; cd00051"
                     /db_xref="CDD:238008"
ORIGIN      
        1 atgggcaagc agaacagcaa gctgcggccc gagatgctgc aggacctgcg ggagaataca
       61 gagttctcag agctggagct gcaggagtgg tacaagggct tcctcaagga ctgccccacg
      121 ggcatcctca acgtggatga gttcaagaag atctacgcca aggccattta caagatggtt
      181 tcgtctgtga tgaagatgcc ggaggacgag tcgaccccgg aaaagaggac tgagaagatc
      241 ttccgccaaa tggacacaaa caacgacggc aagctgtcct tggaggagtt catccgcggg
      301 gccaaaagcg acccgtccat cgtgcgcctg ctgcagtgcg accccagcag cgcctcccag
      361 ttctgagcga ggagccaggt ttcccctccc tgccttcact ggccctctcc cagctctcag
      421 cttcctcgcc cttgtgtctg tccaggctgg gggtcagatt gccaccccca gggtctgcac
      481 tctgaggggc ctatggagaa aggaaccctg cagcgccccc ccccccccaa ggcccaagcc
      541 agcaagtcgt tagcaccccc ctatccggga agcaatatct cccttcggca atgata
//
LOCUS       XM_032647982            3761 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus akirin 1 (AKIRIN1), transcript variant
            X1, mRNA.
ACCESSION   XM_032647982
VERSION     XM_032647982.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3761
                     /gene="AKIRIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 12 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761769"
     CDS             134..712
                     /gene="AKIRIN1"
                     /codon_start=1
                     /product="akirin-1 isoform X1"
                     /protein_id="XP_032503873.1"
                     /db_xref="GeneID:116761769"
                     /translation="MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPPDAE
                     PPPLLQAQTPPPTLQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEA
                     CTSESQPHSSALTAPSSPGSSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQIL
                     NTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS"
     misc_feature    137..709
                     /gene="AKIRIN1"
                     /note="Region: akirin-1; cd22243"
                     /db_xref="CDD:412035"
     misc_feature    200..217
                     /gene="AKIRIN1"
                     /note="nuclear localization signal; other site"
                     /db_xref="CDD:412035"
ORIGIN      
        1 aggcggggcc agcgcctttg ccggtgctgg agccgccatt ggagccggct cggcttgcgg
       61 gctccgctga ggagcgggag gttgggccgc agttaaagtc gcgtcggctc ctggtccctg
      121 gcccttcagc ggcatggcgt gtggggcgac gttgaagcgg cctatggagt tcgaggcggc
      181 gctgctgagc cccggctccc cgaaacggcg gcgctgcgcc cctctgcccg gccccactcc
      241 gggcctcagg cccccggacg ccgagccgcc gccgctgctt caggcgcaga ccccaccgcc
      301 gactctgcag cagcccgccc cgcccggcag cgagcggcgc cttccaaccc cggagcaaat
      361 ttttcagaac ataaaacaag aatacagtcg ttatcagagg tggagacatt tagaagttgt
      421 tcttaatcag agtgaagctt gtacttcgga aagtcagcct cactcctcag cactcacagc
      481 acctagttcg ccaggttcct cctggatgaa gaaggaccag cccaccttta ccctccgaca
      541 agttggaata atatgtgagc gtctcttaaa agactatgaa gataaaattc gggaggaata
      601 tgagcaaatc ctcaatacca aactagcaga acaatatgaa tcttttgtga aattcacaca
      661 tgatcagatt atgcgacgat atgggacaag gccaacaagc tatgtgtcct gaagctttct
      721 tgcatatctg ggtaccaggt ttgacctcaa gagatggctg ctgtacactt tttgcaactg
      781 gtttgatatc acatttcagc tccaactttg catcctgaga acacttaaat gtttctgcag
      841 gtccatttta tacaacttga aagaccttaa aactttccgg ttgccacaag catatgtttc
      901 ttttctgctc atccaataaa cagctgtgcc ctactgtgat agattttcca aacaaaaata
      961 cctggagcag cagtttagca aaatatgccc tcagtggcac tcaacaaatg gagtttcccc
     1021 aagcacagtt ctgtaagaag tgtgtgtgag agtgtgtgta tgtgtgtgta tgtgtatttt
     1081 aagttattat ttgtattgtg caaatttttt tgatcttggg gattctggct gtgaatttga
     1141 tgcacgacaa ttatggttaa aaacatttcc ttggtctaca gaagatcatt aatgttttgt
     1201 gaccatataa gttgtaacag tggattgttt gctgtgtagg tgttattgtt aaatacaggg
     1261 actggttcca ggcacagaat atgaatcata agttaggatg gacattagat gtgattatga
     1321 cgacatagca aaggtctgtg gtcctaggtc tacaaatgcg tggtgaggaa ttagaacaaa
     1381 cccgagacag gccatttgac acatgactct gcctagctgt gttagaacat tactttgact
     1441 ccaagcctta aaatacccac gtggagtctg tgctcacctc attcacacaa ggagctccct
     1501 ggacactgaa cctctaagaa ggaagagagt ctcctctgga ggaggagcat caggctttgc
     1561 ttgggagcat gacaaaggcg agcatggggc tgggccacgc ccctgaggca ctgctacttg
     1621 ggaggcgcca cttcaccttt gttatcactt attagaaata gaatttggat cctttggtca
     1681 ggttccccca aattctttta agagatgtcc atgttcaatt gcttgagctt tgttttggca
     1741 accccctgcc cgaagttgct tacagactgt tcttcacctt atttccaagg ctgaggaaca
     1801 gaaagtaacc tctgttttga ggaggtggaa gttaagtata catttatttt ttactgtgac
     1861 ttgttcagga ccacgtttta caaaatgcct tgtttccttt attattgttt ctggaaagga
     1921 aagttctatt aaaattgttt tagtttgaat atagaatagt ttttttaatt aaggcttatt
     1981 ttgaaaaaaa ctgtgtttaa ttcaaatgta tgccagtacc ttccaaagta aggtaatatt
     2041 cagagacagt tgtcctgatc agatggctta gagaagtttc tggaatattc acattcgaag
     2101 attccttatt aatgaatgtc tttgacttaa atctaaccaa aaactgcaac attattcttt
     2161 gtacattttc attatatagt gttaacaagc ttagttgcaa acaaataaaa tacttaagct
     2221 atttgtttac cttgccttct taatactgtg ataatgttta ttaattcaaa taatttatgt
     2281 gaggctgcta taaccatttc cctatttcaa cattacattt aagatttaaa gactttttaa
     2341 agcccagaag tgatctttta ataattaaag aattattttt acttcatatt tgaagggcag
     2401 tgtgtttcat ctcttgtttt tccagggtag tcacttgttc ctggaagagg agaatagcag
     2461 tggctgtaat gggagtggcc tcacagtggg atagtcgccc taaaacaagg gcagggcagc
     2521 tgtgggggcc atccgaagtc ctgaaggatg ggccagaaat ggggaacgct gcctcactga
     2581 agttttcttg ttacagaatc agtgtgatat gttcattcac tcttgcagtt gtcagcccca
     2641 ttcctactaa atggctgctg ggtgggaaat agagtaggtt tctataagga aaatgacaga
     2701 caccctctca ctgcacctag tgttgttagg ctgttttatt gtcatatggt tgcctttggg
     2761 ggccacagag taagaccacg ccaccatggc tgggttttgg gatctcctca aaagggactg
     2821 gacatgtttg tttaatgttt tatgcagaga gaagatgact cctaggtcag aaaatgggga
     2881 cctgtgaggt aagccttaga ctagtgaaag gtgttttttc ctagaccttg atttctaggg
     2941 cttgaacata ggggcattcc caggtgggga tgtgtctttg tctcatggaa ataggtcaag
     3001 gcccggggaa gaagtcaacg tacggagacc gtaaggatgg gccagaacct gtggtctcag
     3061 aagatctgta tctagtgagc tagttaaaat ttttttctgt ttgaattcca tttattatct
     3121 ttaagtaaag tcttcacctt aaggggaatg aaaggagtaa gtgtccatgc atacctaggt
     3181 cagaggagta caggggagat taaagtttgt gaggcagtca taattgtcaa gagctcccag
     3241 gaaaagaaga acatcagaag acacatgaac ttgggccaac cttccacaca cagtgaatct
     3301 tctctgccca ccagggagga ttggttgttt agaatagtag ctaaaggaat ggcctttgga
     3361 tgtttgtagc cctagagttt agtctgctct gccactaatt tgctatgtga gccttgccaa
     3421 gctactgaac tttctgagcc acggtttcct tatctgtaaa atgagggtta attgtatgta
     3481 catcattggg gtttgttttc aaatagatta aatagtccat gtaaagaaag tacttatatt
     3541 tagcacaggt tggggcatat aatatgcact tgaaaatgtt acagcaggtt tctttacagt
     3601 ggtcttcatc agatctgaag accaaaacct ctttctgcag tggtgattct caactttcca
     3661 gaacgaatag ccccttgtta acatcaaatc tcacattctc ttattagaat ttgtactttt
     3721 taagtgtttg actaaaaaat aaaaggtaaa tgacaaatga a
//
LOCUS       XM_032647991            2092 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus akirin 1 (AKIRIN1), transcript variant
            X2, mRNA.
ACCESSION   XM_032647991
VERSION     XM_032647991.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2092
                     /gene="AKIRIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761769"
     CDS             138..575
                     /gene="AKIRIN1"
                     /codon_start=1
                     /product="akirin-1 isoform X2"
                     /protein_id="XP_032503882.1"
                     /db_xref="GeneID:116761769"
                     /translation="MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPPDAE
                     PPPLLQAQTPPPTLQQPAPPGSERRLPTPGSSWMKKDQPTFTLRQVGIICERLLKDYE
                     DKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS"
     misc_feature    141..572
                     /gene="AKIRIN1"
                     /note="Region: akirin; cl41779"
                     /db_xref="CDD:425410"
     misc_feature    204..221
                     /gene="AKIRIN1"
                     /note="nuclear localization signal; other site"
                     /db_xref="CDD:412034"
ORIGIN      
        1 caggaggcgg ggccagcgcc tttgccggtg ctggagccgc cattggagcc ggctcggctt
       61 gcgggctccg ctgaggagcg ggaggttggg ccgcagttaa agtcgcgtcg gctcctggtc
      121 cctggccctt cagcggcatg gcgtgtgggg cgacgttgaa gcggcctatg gagttcgagg
      181 cggcgctgct gagccccggc tccccgaaac ggcggcgctg cgcccctctg cccggcccca
      241 ctccgggcct caggcccccg gacgccgagc cgccgccgct gcttcaggcg cagaccccac
      301 cgccgactct gcagcagccc gccccgcccg gcagcgagcg gcgccttcca accccgggtt
      361 cctcctggat gaagaaggac cagcccacct ttaccctccg acaagttgga ataatatgtg
      421 agcgtctctt aaaagactat gaagataaaa ttcgggagga atatgagcaa atcctcaata
      481 ccaaactagc agaacaatat gaatcttttg tgaaattcac acatgatcag attatgcgac
      541 gatatgggac aaggccaaca agctatgtgt cctgaagctt tcttgcatat ctgggtacca
      601 ggtttgacct caagagatgg ctgctgtaca ctttttgcaa ctggtttgat atcacatttc
      661 agctccaact ttgcatcctg agaacactta aatgtttctg caggtccatt ttatacaact
      721 tgaaagacct taaaactttc cggttgccac aagcatatgt ttcttttctg ctcatccaat
      781 aaacagctgt gccctactgt gatagatttt ccaaacaaaa atacctggag cagcagttta
      841 gcaaaatatg ccctcagtgg cactcaacaa atggagtttc cccaagcaca gttctgtaag
      901 aagtgtgtgt gagagtgtgt gtatgtgtgt gtatgtgtat tttaagttat tatttgtatt
      961 gtgcaaattt ttttgatctt ggggattctg gctgtgaatt tgatgcacga caattatggt
     1021 taaaaacatt tccttggtct acagaagatc attaatgttt tgtgaccata taagttgtaa
     1081 cagtggattg tttgctgtgt aggtgttatt gttaaataca gggactggtt ccaggcacag
     1141 aatatgaatc ataagttagg atggacatta gatgtgatta tgacgacata gcaaaggtct
     1201 gtggtcctag gtctacaaat gcgtggtgag gaattagaac aaacccgaga caggccattt
     1261 gacacatgac tctgcctagc tgtgttagaa cattactttg actccaagcc ttaaaatacc
     1321 cacgtggagt ctgtgctcac ctcattcaca caaggagctc cctggacact gaacctctaa
     1381 gaaggaagag agtctcctct ggaggaggag catcaggctt tgcttgggag catgacaaag
     1441 gcgagcatgg ggctgggcca cgcccctgag gcactgctac ttgggaggcg ccacttcacc
     1501 tttgttatca cttattagaa atagaatttg gatcctttgg tcaggttccc ccaaattctt
     1561 ttaagagatg tccatgttca attgcttgag ctttgttttg gcaaccccct gcccgaagtt
     1621 gcttacagac tgttcttcac cttatttcca aggctgagga acagaaagta acctctgttt
     1681 tgaggaggtg gaagttaagt atacatttat tttttactgt gacttgttca ggaccacgtt
     1741 ttacaaaatg ccttgtttcc tttattattg tttctggaaa ggaaagttct attaaaattg
     1801 ttttagtttg aatatagaat agttttttta attaaggctt attttgaaaa aaactgtgtt
     1861 taattcaaat gtatgccagt accttccaaa gtaaggtaat attcagagac agttgtcctg
     1921 atcagatggc ttagagaagt ttctggaata ttcacattcg aagattcctt attaatgaat
     1981 gtctttgact taaatctaac caaaaactgc aacattattc tttgtacatt ttcattatat
     2041 agtgttaaca agcttagttg caaacaaata aaatacttaa gctatttgtt ta
//
LOCUS       XM_032648005            1636 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hyaluronan and proteoglycan link protein
            2 (HAPLN2), transcript variant X1, mRNA.
ACCESSION   XM_032648005
VERSION     XM_032648005.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1636
                     /gene="HAPLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 Proteins, and 80%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761776"
     CDS             277..1299
                     /gene="HAPLN2"
                     /codon_start=1
                     /product="hyaluronan and proteoglycan link protein 2"
                     /protein_id="XP_032503896.1"
                     /db_xref="GeneID:116761776"
                     /translation="MQGRISLPTLCHFLLPWAFTTFHRALGDSAPHPGPHYLLPPIHE
                     VIHSRRGATTTLPCVLGAPPPSYKVRWSKVEPGELQETPILITNGLHARGYGPLGGRA
                     RMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLRLEGVVFPYQPSRGRY
                     QFNYYEAKQACEEQDGRLATYAQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG
                     PGRPGIRSYGPRDRKRDRYDAFCFTSELSGQVFFVPGRLTLSEAHAACRRRGAVVAKV
                     GHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQQAAYG
                     TYCYSE"
     misc_feature    412..729
                     /gene="HAPLN2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    436..450
                     /gene="HAPLN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    478..492
                     /gene="HAPLN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    610..624
                     /gene="HAPLN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    652..669
                     /gene="HAPLN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    706..717
                     /gene="HAPLN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    721..1002
                     /gene="HAPLN2"
                     /note="this link domain is found in the first link module
                     of proteins similar to the vertebrate HAPLN (hyaluronan/HA
                     and proteoglycan binding link) protein family which
                     includes cartilage link protein. The link domain is a
                     HA-binding domain. HAPLNs contain two...; Region:
                     Link_domain_HAPLN_module_1; cd03518"
                     /db_xref="CDD:239595"
     misc_feature    751..756
                     /gene="HAPLN2"
                     /note="putative hyaluronan binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:239595"
     misc_feature    1027..1290
                     /gene="HAPLN2"
                     /note="this link domain is found in the second link module
                     of proteins similar to the vertebrate HAPLN (hyaluronan/HA
                     and proteoglycan binding link) protein family which
                     includes cartilage link protein. The link domain is a
                     HA-binding domain. HAPLNs contain two...; Region:
                     Link_domain_HAPLN_module_2; cd03519"
                     /db_xref="CDD:239596"
     misc_feature    1036..1041
                     /gene="HAPLN2"
                     /note="putative hyaluronan binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:239596"
ORIGIN      
        1 gagaaggaaa ggacagacag atgacagaca ggggagctgg acagaagggg tcaggttttt
       61 tgaagcaact ggaggtcctg gaagtctgat tcccaccttg agagcctctt cccataggca
      121 atgcgcaccc aggcaccgga gggcagagag catctagaag aaatgaggca tctcattctc
      181 cacaatattc caggacaaaa agcttccagt cactgctccc tccatctctg tgaagaggcc
      241 cacttctaac agactgtgct gggctgactc cccatcatgc aaggcaggat cagtctcccc
      301 actctctgcc acttccttct cccttgggcc ttcaccacct tccacagagc cctgggggac
      361 tcagcgcccc accctggccc ccactacctc ctgcccccca tccacgaggt cattcactct
      421 cgtcgtgggg ccacgaccac gctgccctgc gtcctgggcg ccccgcctcc cagctacaag
      481 gtgcgctgga gcaaagtgga gccgggggaa ctccaggaaa cgcccattct catcaccaac
      541 ggactgcacg cccggggcta cgggcccctg ggggggcgtg ccaggatgcg aagggggcat
      601 cggctagacg cctccctggt catcgcgggc gtgcgcctgg aggacgaggg ccggtaccgc
      661 tgtgagctca tcaatggcat cgaggacgag agtgtggcgc tgacccttcg cctggagggt
      721 gtggtgtttc cgtaccagcc cagccggggt aggtaccagt tcaattacta cgaggcgaag
      781 caggcgtgcg aggagcaaga cggacgcctg gctacctacg cccagctgta ccaggcgtgg
      841 accgagggtc tggactggtg taacgcgggc tggctgctcg agggttccgt gcgctacccg
      901 gtgctcacgg cgcgcgctcc gtgcggtggc ccaggtcggc ccgggatccg cagctacggg
      961 ccccgcgacc ggaagcgcga ccgctatgac gccttctgct ttacctctga gctgtcaggc
     1021 caagtgttct tcgtgccggg gcggctgacg ctgtctgaag cccacgcggc gtgccggcgg
     1081 cgcggggccg tggtggccaa ggtcgggcac ctctatgcag cctggaagtt ctccgggctg
     1141 gaccaatgcg acggcggctg gctggcggat ggcagcgtgc gcttccccat caccacgcct
     1201 cggccgcgct gcgggggcct cccggatccc ggagtgcgca gcttcggctt ccccagaccc
     1261 cagcaggcgg cctacgggac ctactgctac tccgaatagg ggcccacagc gccccctcca
     1321 gcgctcgcga caaagcctgg gagtcgtgtc aggggtctct cgccgcccct ttcccgcgag
     1381 cctccccttc catcagacga ggagcagtcc ctcctgaccc gccttctcgg ccgagggctg
     1441 caggccgagg atcccggctg tcccggcgtc ggggagggga agtggtggcg cacccggtgg
     1501 cggtgcgcgg ctacgaccct cggacccgcg gtggttcgcg cgccccggca gacgaggcag
     1561 ccactgctag gtgacggaag gggagtccag gggcattaac tgacttctat atacagcaat
     1621 aaaataactc gaggac
//
LOCUS       XM_032648012            1544 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hyaluronan and proteoglycan link protein
            2 (HAPLN2), transcript variant X2, mRNA.
ACCESSION   XM_032648012
VERSION     XM_032648012.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1544
                     /gene="HAPLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 Proteins, and 85%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761776"
     CDS             181..1203
                     /gene="HAPLN2"
                     /codon_start=1
                     /product="hyaluronan and proteoglycan link protein 2"
                     /protein_id="XP_032503903.1"
                     /db_xref="GeneID:116761776"
                     /translation="MQGRISLPTLCHFLLPWAFTTFHRALGDSAPHPGPHYLLPPIHE
                     VIHSRRGATTTLPCVLGAPPPSYKVRWSKVEPGELQETPILITNGLHARGYGPLGGRA
                     RMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLRLEGVVFPYQPSRGRY
                     QFNYYEAKQACEEQDGRLATYAQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG
                     PGRPGIRSYGPRDRKRDRYDAFCFTSELSGQVFFVPGRLTLSEAHAACRRRGAVVAKV
                     GHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQQAAYG
                     TYCYSE"
     misc_feature    316..633
                     /gene="HAPLN2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    340..354
                     /gene="HAPLN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    382..396
                     /gene="HAPLN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    514..528
                     /gene="HAPLN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    556..573
                     /gene="HAPLN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    610..621
                     /gene="HAPLN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    625..906
                     /gene="HAPLN2"
                     /note="this link domain is found in the first link module
                     of proteins similar to the vertebrate HAPLN (hyaluronan/HA
                     and proteoglycan binding link) protein family which
                     includes cartilage link protein. The link domain is a
                     HA-binding domain. HAPLNs contain two...; Region:
                     Link_domain_HAPLN_module_1; cd03518"
                     /db_xref="CDD:239595"
     misc_feature    655..660
                     /gene="HAPLN2"
                     /note="putative hyaluronan binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:239595"
     misc_feature    931..1194
                     /gene="HAPLN2"
                     /note="this link domain is found in the second link module
                     of proteins similar to the vertebrate HAPLN (hyaluronan/HA
                     and proteoglycan binding link) protein family which
                     includes cartilage link protein. The link domain is a
                     HA-binding domain. HAPLNs contain two...; Region:
                     Link_domain_HAPLN_module_2; cd03519"
                     /db_xref="CDD:239596"
     misc_feature    940..945
                     /gene="HAPLN2"
                     /note="putative hyaluronan binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:239596"
ORIGIN      
        1 gttttttgaa gcaactggag gtcctggaag tctgattccc accttgagag cctcttccca
       61 taggcaatgc gcacccaggc accggagggc agagcaggac aaaaagcttc cagtcactgc
      121 tccctccatc tctgtgaaga ggcccacttc taacagactg tgctgggctg actccccatc
      181 atgcaaggca ggatcagtct ccccactctc tgccacttcc ttctcccttg ggccttcacc
      241 accttccaca gagccctggg ggactcagcg ccccaccctg gcccccacta cctcctgccc
      301 cccatccacg aggtcattca ctctcgtcgt ggggccacga ccacgctgcc ctgcgtcctg
      361 ggcgccccgc ctcccagcta caaggtgcgc tggagcaaag tggagccggg ggaactccag
      421 gaaacgccca ttctcatcac caacggactg cacgcccggg gctacgggcc cctggggggg
      481 cgtgccagga tgcgaagggg gcatcggcta gacgcctccc tggtcatcgc gggcgtgcgc
      541 ctggaggacg agggccggta ccgctgtgag ctcatcaatg gcatcgagga cgagagtgtg
      601 gcgctgaccc ttcgcctgga gggtgtggtg tttccgtacc agcccagccg gggtaggtac
      661 cagttcaatt actacgaggc gaagcaggcg tgcgaggagc aagacggacg cctggctacc
      721 tacgcccagc tgtaccaggc gtggaccgag ggtctggact ggtgtaacgc gggctggctg
      781 ctcgagggtt ccgtgcgcta cccggtgctc acggcgcgcg ctccgtgcgg tggcccaggt
      841 cggcccggga tccgcagcta cgggccccgc gaccggaagc gcgaccgcta tgacgccttc
      901 tgctttacct ctgagctgtc aggccaagtg ttcttcgtgc cggggcggct gacgctgtct
      961 gaagcccacg cggcgtgccg gcggcgcggg gccgtggtgg ccaaggtcgg gcacctctat
     1021 gcagcctgga agttctccgg gctggaccaa tgcgacggcg gctggctggc ggatggcagc
     1081 gtgcgcttcc ccatcaccac gcctcggccg cgctgcgggg gcctcccgga tcccggagtg
     1141 cgcagcttcg gcttccccag accccagcag gcggcctacg ggacctactg ctactccgaa
     1201 taggggccca cagcgccccc tccagcgctc gcgacaaagc ctgggagtcg tgtcaggggt
     1261 ctctcgccgc ccctttcccg cgagcctccc cttccatcag acgaggagca gtccctcctg
     1321 acccgccttc tcggccgagg gctgcaggcc gaggatcccg gctgtcccgg cgtcggggag
     1381 gggaagtggt ggcgcacccg gtggcggtgc gcggctacga ccctcggacc cgcggtggtt
     1441 cgcgcgcccc ggcagacgag gcagccactg ctaggtgacg gaaggggagt ccaggggcat
     1501 taactgactt ctatatacag caataaaata actcgaggac tttt
//
LOCUS       XM_032648021            1656 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hyaluronan and proteoglycan link protein
            2 (HAPLN2), transcript variant X3, mRNA.
ACCESSION   XM_032648021
VERSION     XM_032648021.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1656
                     /gene="HAPLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 Proteins, and 80%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761776"
     CDS             294..1316
                     /gene="HAPLN2"
                     /codon_start=1
                     /product="hyaluronan and proteoglycan link protein 2"
                     /protein_id="XP_032503912.1"
                     /db_xref="GeneID:116761776"
                     /translation="MQGRISLPTLCHFLLPWAFTTFHRALGDSAPHPGPHYLLPPIHE
                     VIHSRRGATTTLPCVLGAPPPSYKVRWSKVEPGELQETPILITNGLHARGYGPLGGRA
                     RMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLRLEGVVFPYQPSRGRY
                     QFNYYEAKQACEEQDGRLATYAQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG
                     PGRPGIRSYGPRDRKRDRYDAFCFTSELSGQVFFVPGRLTLSEAHAACRRRGAVVAKV
                     GHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQQAAYG
                     TYCYSE"
     misc_feature    429..746
                     /gene="HAPLN2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    453..467
                     /gene="HAPLN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    495..509
                     /gene="HAPLN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    627..641
                     /gene="HAPLN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    669..686
                     /gene="HAPLN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    723..734
                     /gene="HAPLN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    738..1019
                     /gene="HAPLN2"
                     /note="this link domain is found in the first link module
                     of proteins similar to the vertebrate HAPLN (hyaluronan/HA
                     and proteoglycan binding link) protein family which
                     includes cartilage link protein. The link domain is a
                     HA-binding domain. HAPLNs contain two...; Region:
                     Link_domain_HAPLN_module_1; cd03518"
                     /db_xref="CDD:239595"
     misc_feature    768..773
                     /gene="HAPLN2"
                     /note="putative hyaluronan binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:239595"
     misc_feature    1044..1307
                     /gene="HAPLN2"
                     /note="this link domain is found in the second link module
                     of proteins similar to the vertebrate HAPLN (hyaluronan/HA
                     and proteoglycan binding link) protein family which
                     includes cartilage link protein. The link domain is a
                     HA-binding domain. HAPLNs contain two...; Region:
                     Link_domain_HAPLN_module_2; cd03519"
                     /db_xref="CDD:239596"
     misc_feature    1053..1058
                     /gene="HAPLN2"
                     /note="putative hyaluronan binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:239596"
ORIGIN      
        1 gacagacagg ggagctggac agaaggggtc aggttttttg aagcaactgg aggtcctgga
       61 agtctgattc ccaccttgag agcctcttcc cataggcaat gcgcacccag gcaccggagg
      121 gcagaggggt ccaagtcctg gggctcttag atgcttggac ctcccagggg cccaggcaac
      181 tccttcacct ggagtctctt cctccagcag gacaaaaagc ttccagtcac tgctccctcc
      241 atctctgtga agaggcccac ttctaacaga ctgtgctggg ctgactcccc atcatgcaag
      301 gcaggatcag tctccccact ctctgccact tccttctccc ttgggccttc accaccttcc
      361 acagagccct gggggactca gcgccccacc ctggccccca ctacctcctg ccccccatcc
      421 acgaggtcat tcactctcgt cgtggggcca cgaccacgct gccctgcgtc ctgggcgccc
      481 cgcctcccag ctacaaggtg cgctggagca aagtggagcc gggggaactc caggaaacgc
      541 ccattctcat caccaacgga ctgcacgccc ggggctacgg gcccctgggg gggcgtgcca
      601 ggatgcgaag ggggcatcgg ctagacgcct ccctggtcat cgcgggcgtg cgcctggagg
      661 acgagggccg gtaccgctgt gagctcatca atggcatcga ggacgagagt gtggcgctga
      721 cccttcgcct ggagggtgtg gtgtttccgt accagcccag ccggggtagg taccagttca
      781 attactacga ggcgaagcag gcgtgcgagg agcaagacgg acgcctggct acctacgccc
      841 agctgtacca ggcgtggacc gagggtctgg actggtgtaa cgcgggctgg ctgctcgagg
      901 gttccgtgcg ctacccggtg ctcacggcgc gcgctccgtg cggtggccca ggtcggcccg
      961 ggatccgcag ctacgggccc cgcgaccgga agcgcgaccg ctatgacgcc ttctgcttta
     1021 cctctgagct gtcaggccaa gtgttcttcg tgccggggcg gctgacgctg tctgaagccc
     1081 acgcggcgtg ccggcggcgc ggggccgtgg tggccaaggt cgggcacctc tatgcagcct
     1141 ggaagttctc cgggctggac caatgcgacg gcggctggct ggcggatggc agcgtgcgct
     1201 tccccatcac cacgcctcgg ccgcgctgcg ggggcctccc ggatcccgga gtgcgcagct
     1261 tcggcttccc cagaccccag caggcggcct acgggaccta ctgctactcc gaataggggc
     1321 ccacagcgcc ccctccagcg ctcgcgacaa agcctgggag tcgtgtcagg ggtctctcgc
     1381 cgcccctttc ccgcgagcct ccccttccat cagacgagga gcagtccctc ctgacccgcc
     1441 ttctcggccg agggctgcag gccgaggatc ccggctgtcc cggcgtcggg gaggggaagt
     1501 ggtggcgcac ccggtggcgg tgcgcggcta cgaccctcgg acccgcggtg gttcgcgcgc
     1561 cccggcagac gaggcagcca ctgctaggtg acggaagggg agtccagggg cattaactga
     1621 cttctatata cagcaataaa ataactcgag gacttt
//
LOCUS       XM_032648031            1167 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LIM homeobox 9 (LHX9), mRNA.
ACCESSION   XM_032648031
VERSION     XM_032648031.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                VOSU01000011.1     181557742-181557769
            29-45               VOSU01000011.1     181562905-181562921
            46-46               "N"                1-1
            47-93               VOSU01000011.1     181562922-181562968
            94-144              VOSU01000011.1     181562970-181563020
            145-350             VOSU01000011.1     181564945-181565150
            351-706             VOSU01000011.1     181566316-181566671
            707-909             VOSU01000011.1     181572512-181572714
            910-1167            VOSU01000011.1     181573993-181574250
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1167
                     /gene="LHX9"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     Proteins, and 18% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761790"
     CDS             1..1167
                     /gene="LHX9"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: LIM/homeobox protein Lhx9"
                     /protein_id="XP_032503922.1"
                     /db_xref="GeneID:116761790"
                     /translation="MLNGTTLEAAMLFHGXSGGHIQGIMEEMERRSKTEARLAKGAQL
                     NGRDQGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTC
                     FAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLT
                     TGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGAGTVQKGRP
                     RKRKSPALGVDIVSYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSY
                     FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLP
                     APPSADSGALSPPGTATTLTDLTNPTITVVTAVTSNMDSRESGSPSQTTLTNLF"
     misc_feature    154..345
                     /gene="LHX9"
                     /note="The first LIM domain of Lhx2; Region: LIM1_Lhx2;
                     cd09469"
                     /db_xref="CDD:188853"
     misc_feature    order(184..186,193..195,247..249,256..258,265..267,
                     274..276,331..333,340..342)
                     /gene="LHX9"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188853"
     misc_feature    358..534
                     /gene="LHX9"
                     /note="The second LIM domain of Lhx2 and Lhx9 family;
                     Region: LIM2_Lhx2_Lhx9; cd09377"
                     /db_xref="CDD:188763"
     misc_feature    order(370..372,379..381,436..438,445..447,454..456,
                     463..465,520..522,529..531)
                     /gene="LHX9"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188763"
     misc_feature    775..945
                     /gene="LHX9"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 atgctgaacg gcaccactct agaggcagcc atgctcttcc acggantctc cggaggccac
       61 atccaaggca tcatggagga gatggagcgc agatccaaga ccgaggcccg cctggccaaa
      121 ggcgcccagc tcaacggccg cgaccagggg atgcctccgt tgagccctga gaagcccgcc
      181 ctgtgcgccg gctgcggggg caagatagcc gacaggtact acctgctggc cgtggacaag
      241 cagtggcacc tgaggtgcct gaaatgctgt gaatgtaagc tggccctcga gtccgagctc
      301 acctgcttcg ccaaggacgg tagcatttac tgcaaggagg actactacag aaggttctct
      361 gtgcagagat gtgcccgctg ccaccttggc atctccgcct ccgagatggt catgcgcgcc
      421 cgagactccg tctaccacct gagctgtttc acctgctcca cctgcaacaa gaccctgacc
      481 acgggcgatc attttggcat gaaggacagc ctggtgtact gtcgcgccca cttcgagacc
      541 ctcttgcaag gggagtatcc acctcagctg agctacaccg agctggcggc caagagcggc
      601 ggcttggccc tgccttactt caacggcgct ggcaccgtgc agaaggggcg accccggaag
      661 cggaagagcc ccgcgctggg ggtggacatc gtcagttaca actcaggttg taacgagaat
      721 gaggccgacc atctggaccg agatcagcag ccttacccgc cctcgcagaa gaccaagcgc
      781 atgcgcacct ccttcaagca tcaccagctc cggaccatga aatcctactt tgccatcaac
      841 cacaacccgg acgccaagga cctcaagcag cttgctcaga aaacaggcct gaccaaaaga
      901 gttttgcagg tttggttcca aaacgcacga gccaaattca gaaggaacct tttgcggcag
      961 gagaatgggg gtgttgataa agctgatggc acgtcgcttc cggccccgcc ctcagcagac
     1021 agcggcgcgc tcagtccacc cggcactgcg accactttaa cagacctgac caatcccact
     1081 atcactgtag tgacagccgt gacctctaac atggacagcc gcgaatccgg aagcccctcg
     1141 caaactacct taacgaacct tttctaa
//
LOCUS       XM_032648046            1828 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET and MYND domain containing 2 (SMYD2),
            transcript variant X1, mRNA.
ACCESSION   XM_032648046
VERSION     XM_032648046.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1828
                     /gene="SMYD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 4 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761795"
     CDS             187..1488
                     /gene="SMYD2"
                     /codon_start=1
                     /product="N-lysine methyltransferase SMYD2 isoform X1"
                     /protein_id="XP_032503937.1"
                     /db_xref="GeneID:116761795"
                     /translation="MRAEGDGGLERFSSPGKGRGLRALQSFQVGDLLFSCPAYAYVLT
                     INERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQREDWPMHKLECSPMVVLGENWNP
                     SETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKGLIQSDIAALHHFY
                     SKHLEFPDNHSLVVLFAQVNCNGFTIEDEELSHLGSAVFPDVALMNHSCCPNVIVTYK
                     GTLAEVRAVQEIHPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAK
                     VEIRKLNDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSCVFED
                     SNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQPYSKHYPLYSLNVASMWLKLGRLY
                     MGLENKAAGERALKKAIAIMEVAHGKDHPYISEIKQEIESH"
     misc_feature    205..993
                     /gene="SMYD2"
                     /note="SET domain (including post-SET domain) found in SET
                     and MYND domain-containing protein 2 (SMYD2) and similar
                     proteins; Region: SET_SMYD2; cd19202"
                     /db_xref="CDD:380979"
     misc_feature    order(232..243,499..501,589..591,595..597,607..609,
                     619..621,631..633,715..717,721..741,772..774,793..807,
                     898..906,955..966)
                     /gene="SMYD2"
                     /note="active site"
                     /db_xref="CDD:380979"
     misc_feature    order(232..243,589..591,595..597,727..732,793..807,
                     904..906,958..960,964..966)
                     /gene="SMYD2"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380979"
     misc_feature    340..456
                     /gene="SMYD2"
                     /note="MYND finger; Region: zf-MYND; pfam01753"
                     /db_xref="CDD:460312"
     misc_feature    order(499..501,607..609,619..621,631..633,715..717,
                     721..741,772..774,793..795,898..906,955..963)
                     /gene="SMYD2"
                     /note="inhibitor binding site [chemical binding];
                     inhibition site"
                     /db_xref="CDD:380979"
     misc_feature    order(499..501,721..723,727..741,763..765,793..795,
                     901..906,910..912,958..960)
                     /gene="SMYD2"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:380979"
     misc_feature    order(811..813,970..972,976..978,985..987)
                     /gene="SMYD2"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:380979"
     misc_feature    1348..1452
                     /gene="SMYD2"
                     /note="Tetratricopeptide repeat; Region: TPR_10;
                     pfam13374"
                     /db_xref="CDD:463861"
ORIGIN      
        1 cgcgagggcc gggcggggcc gccgtccctt ccggggagcg gtggctgccg ccgcgtccgc
       61 cgggcagctt cccaccccgc cccccccgcg gctctgggtg acgcttctcc aataacagct
      121 cgcggggagc cgtagctggg ggctccgccg gcgccgggga ccctccgcgc cagccctgcc
      181 gccggcatga gggccgaggg cgacggcggt ctggagcgct tcagcagccc cggcaagggc
      241 cgggggctgc gggccctgca gtccttccag gtgggggact tgctcttctc ctgcccggcc
      301 tacgcctacg tgctcacgat caacgaacgg ggcaaccact gcgagttttg cttcgccagg
      361 aaagaaggat tgtccaaatg tggaagatgc aagcaggcat tttactgcaa tgtggagtgt
      421 cagagagaag attggcccat gcacaagctg gaatgttctc ccatggttgt tttgggggaa
      481 aactggaatc cctcagagac tgtaaggcta actgcacgga ttctggccaa acagaaaatc
      541 cacccagaga gaacaccttc agagaaattg ttagccgtga aggagtttga atcacatctg
      601 gataaattag acaatgagaa gaaaggtttg attcagagtg acattgctgc tctccatcac
      661 ttttactcca agcaccttga gttccctgac aaccatagcc tggtagttct cttcgcacag
      721 gttaactgta atggcttcac aattgaagat gaagaacttt ctcatttggg atcagcagta
      781 tttcctgatg ttgcactgat gaatcatagc tgttgcccca atgtcattgt gacctacaag
      841 gggaccctgg cagaagtcag agctgtacag gaaatccacc ctggagagga ggtttttacc
      901 agctacattg acctcctgta cccaacagaa gataggaatg accggttaag agattcttat
      961 ttcttcacct gtgagtgcca ggagtgcacc accaaagaca aggataaggc caaggtggaa
     1021 atccggaagc tcaatgatcc cccaaaggca gaagccatcc gtgacatggt cagatatgca
     1081 cgcaatgtca ttgaggagtt ccggcgggcc aagcactaca aatcccctag tgagctgctg
     1141 gagatctgcg agctcagcca ggagaagatg agctgtgtgt ttgaggacag taacgtgtac
     1201 atgctacaca tgatgtacca ggccatgggc gtctgcttgt acatgcagga ctgggaggga
     1261 gccctgcggt acggacagaa aatcatccag ccctacagta agcactatcc tctgtactcc
     1321 ctcaacgtgg cctccatgtg gctgaagctg ggaagattgt acatgggcct ggagaacaaa
     1381 gctgctgggg agagagctct gaagaaggcc attgccatca tggaagtagc tcatggcaaa
     1441 gaccatccat acatttctga gatcaaacag gaaattgaaa gccactgaaa ctatgctgac
     1501 attttagttt ttatttaaat ccaagtgcaa aaaccttcga ggatttgact gtttcaaatc
     1561 atacacgtca tgccagcatc tctgtaaact cattggaatg aaaacacaac ttgcacttaa
     1621 ccttacaaat ggcttacttg gatgttggtc ttaatcttga accttcatat caaattaatt
     1681 tttgaatgct ttttttccct aaaagataat ggcatggttt catatattat aatttaaaaa
     1741 tgcagttatt tttcccttca tgcctactgt aatgttctaa acaaacatga atgatgaaag
     1801 agaattaaaa aagataatac tatatgaa
//
LOCUS       XM_032648054            1710 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET and MYND domain containing 2 (SMYD2),
            transcript variant X2, mRNA.
ACCESSION   XM_032648054
VERSION     XM_032648054.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1710
                     /gene="SMYD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761795"
     CDS             189..1379
                     /gene="SMYD2"
                     /codon_start=1
                     /product="N-lysine methyltransferase SMYD2 isoform X2"
                     /protein_id="XP_032503945.1"
                     /db_xref="GeneID:116761795"
                     /translation="MRAEGDGGLERFSSPGKGRGLRALQSFQVGDLLFSCPAYAYVLT
                     INERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQREDWPMHKLECSPMVVLGENWNP
                     SETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKGLIQSDIAALHHFY
                     SKHLEFPDNHSLVVLFAQVNCNGFTIEDEELSHLGSAVFPDVALMNHSCCPNVIVTYK
                     GTLAEVRAVQEIHPGEEDKAKVEIRKLNDPPKAEAIRDMVRYARNVIEEFRRAKHYKS
                     PSELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQPYS
                     KHYPLYSLNVASMWLKLGRLYMGLENKAAGERALKKAIAIMEVAHGKDHPYISEIKQE
                     IESH"
     misc_feature    207..893
                     /gene="SMYD2"
                     /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
                     domain superfamily; Region: SET; cl40432"
                     /db_xref="CDD:394802"
     misc_feature    order(240..245,795..809)
                     /gene="SMYD2"
                     /note="SAM binding site [polypeptide binding]; other site"
                     /db_xref="CDD:380914"
     misc_feature    342..458
                     /gene="SMYD2"
                     /note="MYND finger; Region: zf-MYND; pfam01753"
                     /db_xref="CDD:460312"
     misc_feature    1239..1343
                     /gene="SMYD2"
                     /note="Tetratricopeptide repeat; Region: TPR_10;
                     pfam13374"
                     /db_xref="CDD:463861"
ORIGIN      
        1 cgcgcgaggg ccgggcgggg ccgccgtccc ttccggggag cggtggctgc cgccgcgtcc
       61 gccgggcagc ttcccacccc gccccccccg cggctctggg tgacgcttct ccaataacag
      121 ctcgcgggga gccgtagctg ggggctccgc cggcgccggg gaccctccgc gccagccctg
      181 ccgccggcat gagggccgag ggcgacggcg gtctggagcg cttcagcagc cccggcaagg
      241 gccgggggct gcgggccctg cagtccttcc aggtggggga cttgctcttc tcctgcccgg
      301 cctacgccta cgtgctcacg atcaacgaac ggggcaacca ctgcgagttt tgcttcgcca
      361 ggaaagaagg attgtccaaa tgtggaagat gcaagcaggc attttactgc aatgtggagt
      421 gtcagagaga agattggccc atgcacaagc tggaatgttc tcccatggtt gttttggggg
      481 aaaactggaa tccctcagag actgtaaggc taactgcacg gattctggcc aaacagaaaa
      541 tccacccaga gagaacacct tcagagaaat tgttagccgt gaaggagttt gaatcacatc
      601 tggataaatt agacaatgag aagaaaggtt tgattcagag tgacattgct gctctccatc
      661 acttttactc caagcacctt gagttccctg acaaccatag cctggtagtt ctcttcgcac
      721 aggttaactg taatggcttc acaattgaag atgaagaact ttctcatttg ggatcagcag
      781 tatttcctga tgttgcactg atgaatcata gctgttgccc caatgtcatt gtgacctaca
      841 aggggaccct ggcagaagtc agagctgtac aggaaatcca ccctggagag gaggataagg
      901 ccaaggtgga aatccggaag ctcaatgatc ccccaaaggc agaagccatc cgtgacatgg
      961 tcagatatgc acgcaatgtc attgaggagt tccggcgggc caagcactac aaatccccta
     1021 gtgagctgct ggagatctgc gagctcagcc aggagaagat gagctgtgtg tttgaggaca
     1081 gtaacgtgta catgctacac atgatgtacc aggccatggg cgtctgcttg tacatgcagg
     1141 actgggaggg agccctgcgg tacggacaga aaatcatcca gccctacagt aagcactatc
     1201 ctctgtactc cctcaacgtg gcctccatgt ggctgaagct gggaagattg tacatgggcc
     1261 tggagaacaa agctgctggg gagagagctc tgaagaaggc cattgccatc atggaagtag
     1321 ctcatggcaa agaccatcca tacatttctg agatcaaaca ggaaattgaa agccactgaa
     1381 actatgctga cattttagtt tttatttaaa tccaagtgca aaaaccttcg aggatttgac
     1441 tgtttcaaat catacacgtc atgccagcat ctctgtaaac tcattggaat gaaaacacaa
     1501 cttgcactta accttacaaa tggcttactt ggatgttggt cttaatcttg aaccttcata
     1561 tcaaattaat ttttgaatgc tttttttccc taaaagataa tggcatggtt tcatatatta
     1621 taatttaaaa atgcagttat ttttcccttc atgcctactg taatgttcta aacaaacatg
     1681 aatgatgaaa gagaattaaa aaagataata
//
LOCUS       XR_004352113            2129 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET and MYND domain containing 2 (SMYD2),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004352113
VERSION     XR_004352113.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2129
                     /gene="SMYD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761795"
     misc_RNA        1..2129
                     /gene="SMYD2"
                     /product="SET and MYND domain containing 2, transcript
                     variant X3"
                     /db_xref="GeneID:116761795"
ORIGIN      
        1 cccccgcctc ccgggggcgc gcgagggccg ggcggggccg ccgtcccttc cggggagcgg
       61 tggctgccgc cgcgtccgcc gggcagcttc ccaccccgcc ccccccgcgg ctctgggtga
      121 cgcttctcca ataacagctc gcggggagcc gtagctgggg gctccgccgg cgccggggac
      181 cctccgcgcc agccctgccg ccggcatgag ggccgagggc gacggcggtc tggagcgctt
      241 cagcagcccc ggcaagggcc gggggctgcg ggccctgcag tccttccagg tgggggactt
      301 gctcttctcc tgcccggcct acgcctacgt gctcacgatc aacgaacggg gcaaccactg
      361 cgagttttgc ttcgccagga aagaaggatt gtccaaatgt ggaagatgca agcaggcatt
      421 ttactgcaat gtggagtgtc agagagaaga ttggcccatg cacaagctgg aatgttctcc
      481 catggttgtt ttgggggaaa actggaatcc ctcagagact gtaaggctaa ctgcacggat
      541 tctggccaaa cagaaaatcc acccagagag aacaccttca gagaaattgt tagccgtgaa
      601 ggagtttgaa tcacatctgg ataaattaga caatgagaag aaaggtttga ttcagagtga
      661 cattgctgct ctccatcact tttactccaa gcaccttgag ttccctgaca accatagcct
      721 ggtagttctc ttcgcacagg ttaactgtaa tggcttcaca attgaagatg aagaactttc
      781 tcatttggga tcagcagtat ttcctgatgt tgcactgatg aatcatagct gttgccccaa
      841 tgtcattgtg acctacaagg ggaccctggc agaagtcaga gctgtacagg aaatccaccc
      901 tggagaggag gtttttacca gctacattga cctcctgtac ccaacagaag ataggaatga
      961 ccggttaaga gattcttatt tcttcacctg tgagtgccag gagtgcacca ccaaagacaa
     1021 ggataaggcc aaggtggaaa tccggaagct caatgatccc ccaaaggcag aagccatccg
     1081 tgacatggtc agatatgcac gcaatgtcat tgaggagttc cggcgggcca agcactacaa
     1141 atatatcctt tacaaccagc cctcccttat agggggtgtt ggggagtttg ggcacgggga
     1201 acggggggag aatgggtttc agattctgaa tattggagga aggatgtgtc ctggtaaatg
     1261 tttaaagact tactcgccat ccatcacttg gagtcaacta catcagcact tcatgatgtt
     1321 gaccttatct gtttctcttc tttgactagt ttgctcagga gcgcaccctt gtggaagact
     1381 tttattgtct aaaactgcag aactgttcct tgaagaccct cactgactgg caccccctag
     1441 tgagctgctg gagatctgcg agctcagcca ggagaagatg agctgtgtgt ttgaggacag
     1501 taacgtgtac atgctacaca tgatgtacca ggccatgggc gtctgcttgt acatgcagga
     1561 ctgggaggga gccctgcggt acggacagaa aatcatccag ccctacagta agcactatcc
     1621 tctgtactcc ctcaacgtgg cctccatgtg gctgaagctg ggaagattgt acatgggcct
     1681 ggagaacaaa gctgctgggg agagagctct gaagaaggcc attgccatca tggaagtagc
     1741 tcatggcaaa gaccatccat acatttctga gatcaaacag gaaattgaaa gccactgaaa
     1801 ctatgctgac attttagttt ttatttaaat ccaagtgcaa aaaccttcga ggatttgact
     1861 gtttcaaatc atacacgtca tgccagcatc tctgtaaact cattggaatg aaaacacaac
     1921 ttgcacttaa ccttacaaat ggcttacttg gatgttggtc ttaatcttga accttcatat
     1981 caaattaatt tttgaatgct ttttttccct aaaagataat ggcatggttt catatattat
     2041 aatttaaaaa tgcagttatt tttcccttca tgcctactgt aatgttctaa acaaacatga
     2101 atgatgaaag agaattaaaa aagataata
//
LOCUS       XM_032648071            2450 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class M (PIGM), mRNA.
ACCESSION   XM_032648071
VERSION     XM_032648071.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2450
                     /gene="PIGM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 10
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761808"
     CDS             131..1402
                     /gene="PIGM"
                     /codon_start=1
                     /product="GPI mannosyltransferase 1"
                     /protein_id="XP_032503962.1"
                     /db_xref="GeneID:116761808"
                     /translation="MSPTTPSGEWFLNLWVSPAGVFGVAFLARVALVFYGLFQDRTLL
                     VRYTDIDYQVFTDAARFVTEGRSPYLRATYRYTPLLGWFLTPNIYLNELFGKFLFVSF
                     DLLTAYLVYRLLLLKGLGRRQACGYCVFWLLNPLPMAVSSRGNADSIVSSLVLMTLYL
                     IEKRLVACAAVFYGFAVHLKMYPVTYILPIALHLLPERDSDEGLRQSRYSSQARLYEF
                     LKRLCNRAVLHFVAIAGLTFFALSFGFYYKYGWEFLEHTYLYHLTRRDIRHNFSPYFY
                     MLYLTAESKWSFSLGIAAFLPQFILLSAVSFAYYRDLAFCCFLHTSIFVTFNKVCTSQ
                     YFLWYLCLLPLVMPLVRMPWRRAVVLLMLWFIGQALWLAPAYVLEFQGKNTFLFIWLA
                     GLFFLLINCSILIQIISHYEEEPLTDRTKYD"
     misc_feature    548..1354
                     /gene="PIGM"
                     /note="Mannosyltransferase (PIG-M); Region:
                     Mannosyl_trans; pfam05007"
                     /db_xref="CDD:252941"
ORIGIN      
        1 aagttgtttc ggttgccagt ctagctggta ggagtagtgc cggcgagctg aagcaaggaa
       61 ccgcagctaa ggttagacct cccaaggcag tttagagctg gggactgagc tgctgtggtg
      121 cagtcagatc atgagcccga ccacgccctc gggagagtgg ttcctgaacc tgtgggtgtc
      181 ccccgccggg gtatttggtg tggcctttct tgcccgagtg gccctggttt tctatgggct
      241 cttccaggac cggaccctgc tcgtgaggta tacagacatc gactaccagg tcttcaccga
      301 cgccgcgcgt ttcgtcacgg aagggcgctc cccttacctg agggcgacgt accgttacac
      361 tccgctgctg gggtggttcc tcactcccaa tatctatctc aatgaactct ttggaaagtt
      421 tctcttcgtc agcttcgacc tcctcaccgc ctacctcgta taccggctac tgcttcttaa
      481 ggggctgggt cgccgccagg cttgcggtta ctgtgtcttt tggcttctta accccctacc
      541 tatggcggtg tccagccgag gcaatgcgga ctcaatcgtc tcctccctgg tgcttatgac
      601 cctgtaccta atagaaaaaa ggctcgtcgc gtgtgccgct gtgttctatg gtttcgcagt
      661 gcatttgaag atgtatccgg tgacctatat ccttcccata gcactccact tgcttccgga
      721 acgcgacagt gacgaaggcc tccgtcaatc ccggtattct tcccaggctc gtctgtatga
      781 attcctgaag aggctgtgta atcgggccgt gctacacttc gtagccattg ctggactcac
      841 gttttttgcc ctgagcttcg gtttttacta taaatatggt tgggagtttt tggagcacac
      901 ctacctttat cacctgacca ggcgggatat ccgtcacaac ttctctccat acttctacat
      961 gctgtatttg accgcagaga gcaagtggag tttttccctg ggaattgctg cattcctgcc
     1021 gcaattcatc ttgctttcag cagtgtcttt cgcttattac agagaccttg ccttttgttg
     1081 ttttcttcat acgtctattt ttgtgacatt taacaaagtc tgcacctccc agtactttct
     1141 ttggtacctc tgcctcctgc ctcttgtgat gccactagtg agaatgcctt ggagaagagc
     1201 tgtggttctc ctgatgttat ggttcatagg gcaggcctta tggctggctc ctgcttatgt
     1261 tcttgagttt caaggaaaga acacctttct gtttatctgg ttagctggtt tgttcttcct
     1321 ccttatcaac tgttccatcc tcattcaaat catttcccat tacgaggagg aacccctgac
     1381 agacagaacc aaatatgact gatagatgct ccagttcttc tgcaacttgc attctgattg
     1441 ttatgaatgg accaaagaga gctttggaaa gaattttttt gaacatcctg agcactctag
     1501 tgaaacttca gtttagagca taaaacccta ttccaacaaa tttaaatgaa tatttgcctt
     1561 ataaaggcga ctcagtaact gaggtccacc ctttaggaaa tcctcaggac tcatttatct
     1621 gggacatgat gggaagtaaa ggttactagt ttgaatacag aagagctggg gcttccctgg
     1681 tggcgcagtg gttaagaacc cgcctgccaa tgcaggcgac acaggttcga gccctggtct
     1741 gggaagatcc cacatgccgc ggagcaacta agtccgtgtg ccacaactac tgagcctgtg
     1801 ttctagagcc cgtgaaccac aactatcgaa gcccatgcgc ctaaagcccg tgctctgcaa
     1861 caagaggagc caccgcaatg agaagcccgt gcaccacaac gaagagtagc ccccgctcac
     1921 cgcaactaga gaaagcctgc gcccaacaac aaagacccaa tgcagccaaa aaaaattatt
     1981 aggctaaatt aaaaagcaat taaaaaaaac aagggctgat gaaattatca gatgctaaaa
     2041 ggttttttgt agaaaataga ggaaacataa agtcaaaaaa cataaaattc taagccagta
     2101 tttgttccag tatttatact gaggtactat ctgaagctgt cttatctttt aactcccact
     2161 ttttcgttct gaagctttct tgataactga aaactcataa aatgttccta aagtacagct
     2221 tttagatatg aaatgttaaa taatgatgct gtgcttaggt tgggaaagtt aattctgtat
     2281 taaaagtggg ggcttagaag ataaagaatc cgaagaattt aaattgtagt catgtttcat
     2341 gtacttgttt tataacttag tttttcagtg cttagtccca gtggtaatag actgctgttt
     2401 ggttttttac aaaaaggatt aaatttaaat tcatccatct ttaaactttt
//
LOCUS       XM_032648084            4116 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium inwardly rectifying channel
            subfamily J member 9 (KCNJ9), mRNA.
ACCESSION   XM_032648084
VERSION     XM_032648084.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4116
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4116
                     /gene="KCNJ9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 32 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116761814"
     CDS             265..1446
                     /gene="KCNJ9"
                     /codon_start=1
                     /product="G protein-activated inward rectifier potassium
                     channel 3"
                     /protein_id="XP_032503975.1"
                     /db_xref="GeneID:116761814"
                     /translation="MAQENAAFSPGPEEQPRRRGRQRYVEKDGRCNVQQGNVRETYRY
                     LTDLFTTLVDLQWRLSLLFFVLAYALTWLFFGAIWWLIAYGRGDLEHLEDTAWTPCVN
                     NLNGFVAAFLFSIETETTIGYGHRVITDQCPEGIVLLLLQAILGSMVNAFMVGCMFVK
                     ISQPNKRAATLVFSSHAVVSLRDGRLCLMFRVGDLRSSHIVEASIRAKLIRSRQTLEG
                     EFIPLHQTDLSVGFDTGDDRLFLVSPLVISHEIDAASPFWEASRRALERDDFEIVVIL
                     EGMVEATGMTCQARSSYLVDEVLWGHRFTSVLTLEDGFYEVDYASFHQTFEVPTPSCS
                     ARELAEAAARLDAHLYWSIPSRLDEKVEEEGLGEGAGEEAGADKEQNGCLPPPESESK
                     V"
     misc_feature    337..756
                     /gene="KCNJ9"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; Region: IRK; pfam01007"
                     /db_xref="CDD:460023"
     misc_feature    775..1266
                     /gene="KCNJ9"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; Region: IRK_C; pfam17655"
                     /db_xref="CDD:465439"
ORIGIN      
        1 gctgacgaag agaaactttc caaagagttc attgagatag atattgggag tgaggaacca
       61 ccccagcagc ggagtgtaac ggtacgtcgc cctcagttgc tgttgaggtc aggaagtccc
      121 tccctgctac ccgccctcaa ctcaaggctt cctgctctac tgctattggc cctggatggc
      181 acacttggga ttgctggggg aaagcccctc caggccccgc gccgccgccg cccgggccgt
      241 gacctccccg ccgtggccac ggccatggcg caggagaacg ccgccttctc gccggggcct
      301 gaggagcagc cgcggcgtcg cggccgccag cgctacgtgg agaaggacgg ccgctgcaat
      361 gtgcagcagg gcaacgtgcg cgagacgtac cgctacctga ccgacctgtt caccacgctc
      421 gtggacctgc agtggcgcct gagcctgctc ttcttcgtgc tggcctacgc gctcacctgg
      481 ctcttcttcg gcgccatctg gtggctgatc gcctacggcc gcggcgacct ggagcacctg
      541 gaggacacgg cgtggacgcc gtgcgtcaac aacctcaacg gcttcgtggc cgccttcctc
      601 ttctccatcg agacggagac caccatcggc tacgggcacc gcgtcatcac cgaccagtgc
      661 cccgagggca tcgtgctgct gctgctgcag gccatcctgg gctccatggt gaacgccttc
      721 atggtgggct gcatgttcgt caagatctcg cagcccaaca agcgcgccgc cacgctcgtc
      781 ttctcctcgc acgccgtggt gtcgctgcgc gacgggcgcc tctgcctcat gttccgcgtg
      841 ggcgacctgc gctcgtcgca catagtcgag gcttccatac gcgccaagct catccgctcg
      901 cgccagacgc tcgagggcga gttcatcccg ctgcaccaga ccgacctcag cgtgggcttt
      961 gacacgggcg acgaccgcct cttcctcgtc tcaccgctcg tcatcagcca cgagatcgac
     1021 gccgccagcc ccttctggga ggcgtcgcgc cgcgccctcg agagggacga cttcgagatc
     1081 gtcgtcatcc tcgagggcat ggtggaagcc acgggaatga catgccaagc tcggagctcc
     1141 tacctggtgg atgaggtgct gtggggtcac cgcttcacgt cagtgctgac cctggaggat
     1201 ggcttctacg aggtagacta tgccagcttc caccagacct ttgaggtgcc cacaccctca
     1261 tgcagcgccc gggagctggc cgaggctgca gcccgccttg acgcccatct ctactggtcc
     1321 atccccagcc ggctggacga gaaggtggag gaggaggggc tgggggaggg ggcgggcgaa
     1381 gaggctgggg ctgacaaaga gcagaatggc tgcctgccgc ccccggagag tgagtccaag
     1441 gtgtgaccag tttcctccag atccctgtgg cagggccaga cacaggtacc tggggagctg
     1501 gttacggaag gtggaggagg gcgcaggcaa ggtccctggg aatgcactaa agctggggag
     1561 cctcctcaga atctcaggtc tgggatccaa catggatggg agagatcctg atttcaggag
     1621 aatggagggt ggggaatggg taaacttgcc agcctgtctg tgtttgacct tcacttctgt
     1681 tcacgtgtgg atggatggac agaaggatgg acctatgcgg gttggatgag aaggtggaaa
     1741 cagagagaga cagccagcca gtggataggt gaatgggcca acagaccaac agacaggtgg
     1801 tgtgctcagg gctgccgcta actcatagag catcttggtg caaattctaa aaaggcggct
     1861 ttttcctcca gactgacact accccaaact agggtgcatg gcttggggag cagagtgtgg
     1921 gctggatttt agtccccact cacctcctca gccagcttcc ctgagtctgg cgcacctgtc
     1981 tcactggaca cagtagccca agctgaccca gaggtgagaa agctggacgg aggcgggcag
     2041 agatgaggag ggtgccctcc cagctccacc cctgccactg tgacaggctg agagggaggg
     2101 tgaaaggctg cagggcggct cagcagggtg tgaatgacct tgtccatgtg tgcagggaaa
     2161 ccagcgatgg gggagatgcc agagctgggg ccctggggca gggcctagga aaggcgaaca
     2221 aaggatggct attttctgac agtgaagtga ggtctcgtga gtaccactgc aggggtggga
     2281 ggggatagag aggttctgag gaggaagaag ggccagggag agatagagaa acatgagttc
     2341 actagagctg ggacacgggg tcctcaggaa agcagaatca gtcttagggc acagtgagag
     2401 ggagtcattc acgtggttca ctgggtgccc gttgggtcca gagcattgac ccaggcatgt
     2461 gtggggagga cagtcagaga cccgattcct attctaggaa tatagtacac gtggggaaaa
     2521 cagagaaata tgcctgtggc agctgtttca aactgagaac ctgggcgatc tctccgagca
     2581 cggggtggaa gggcttggta atcagaaagc taggcattgc gtcaggcctg gagagtgacc
     2641 tgagccagca gtcacgaact tgggtaggca tcagggtccc ttggagggct tgggaacaca
     2701 tatggccgag tcccactccc agagtttctg acttaatggg tctgcggtag agaccaaaac
     2761 tttgcatttc taacaagtcc caggtcctgc tgacgctgct ggaacgggga ccacgctcca
     2821 agaagccctt ccctaagcag acttgggggt cctgtcagga ggtgggcatc aagctgaggg
     2881 tccttgggga ggagactgaa atataatggg tatggagaac tgcggtgggg ggaaaggaga
     2941 ccgtgaaacc aaggctgaag agtctgactc tgggcctagg gactcacccg tcagtggaaa
     3001 tcgggctgtg acaagctaga gatggtgttt gggcaagatg agtaggcaag atagatggta
     3061 cagagcagtc gggaaggctt caggggacgt gctgccaagg tggtggcgag ctgaggtagg
     3121 aagggcatct gtggcaaagg agagaatccc acgtaggact taagaggcag gattaaatgt
     3181 gggagaagat gtgagagaga agcgagagtc caaatgtctg gatgtgactg tgacctgctg
     3241 tctgcccagc tggggcagga gcccctggag aggtgttccc atgccacgtg cacccccttc
     3301 ctggtgtcat cgcggtcacc agggacaccc cccaccccag gattgtgaag gaggagcaat
     3361 ggcgagtcga gaaggggcag aggtaggggg acctgcctct gggagagacg tgtacacaca
     3421 ggcagacaca ccctcccacc acacgggccc agcagtgacc tccagccctt ggccctggct
     3481 gtaccccgtt cctgttcttt aacaaaagtc tgagcccctt gtggggaagc accccagtgt
     3541 gctgcattcc aggctgggaa gctggggtcc tgggggatgc tgtgcctcct ggaagcagga
     3601 aagggggctg cggagggagc ccacgccagc ttgggtctgc tcggagagaa cagttttgcc
     3661 tcaggtcaca tggtgacttg ggtcactatc acccaaagat gaggtccctg aacactggtg
     3721 ctggctgttc ccaaagaaca aatgttgggg catggggtaa gaaacagttc tggtttaatt
     3781 tgctgaaaca tctggagtct ggacaggagg gagcgggctc tgggtgtcca cactcactca
     3841 cgcagtagtt cacccattgc aagtgaaccc accgtagagg aactgaggct ggatggaagg
     3901 cattgagacc ccgccacccc tctccttgcc actcagcgac cactcagggc cccactgtgt
     3961 gcagtgcaag gagtctgggg acctgggttc taggcctgac actgtcacga attagttcta
     4021 tgactctggg caagtcgcat cacttctctg ggcctcagtt tccctatctg taaaaacaac
     4081 acttggtaaa ctggtaatgc tcaataaatg tttaaa
//
LOCUS       XM_032648098            4525 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium inwardly rectifying channel
            subfamily J member 10 (KCNJ10), transcript variant X1, mRNA.
ACCESSION   XM_032648098
VERSION     XM_032648098.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4525
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4525
                     /gene="KCNJ10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116761818"
     CDS             134..1276
                     /gene="KCNJ10"
                     /codon_start=1
                     /product="ATP-sensitive inward rectifier potassium channel
                     10 isoform X1"
                     /protein_id="XP_032503989.1"
                     /db_xref="GeneID:116761818"
                     /translation="MTSVAKVYYSQTTQTESRPLMGPGIRRRRVLTKDGRSNVRMEHI
                     ADKRFLYLKDLWTTFIDMQWRYKLLLFSATFAGTWFLFGVVWYLVAVAHGDLLELGPP
                     ANHTPCVVQVHTLTGAFLFSLESQTTIGYGFRYISEECPLAIVLLIAQLVLTTILEIF
                     ITGTFLAKIARPKKRAETIRFSQHAVVAAHNGKPCLMIRVANMRKSLLIGCQVTGKLL
                     QTHQTKEGENIRLNQVNVTFQVDTASDSPFLILPLTFYHVVDETSPLKDLPLRSGEGD
                     FELVLILSGTVESTSATCQVRTSYLPEEILWGYEFTPAISLSASGKYIADFSLFDQVV
                     KVASPSGLRDTSVRYRDPEKLKLEESLREQDEKEGSAISFLKWTLS"
     misc_feature    224..649
                     /gene="KCNJ10"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; Region: IRK; pfam01007"
                     /db_xref="CDD:460023"
     misc_feature    668..1195
                     /gene="KCNJ10"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; Region: IRK_C; pfam17655"
                     /db_xref="CDD:465439"
ORIGIN      
        1 ttatctgatc ccggctccgg gtttaagagt cctggccctg cccgtcgcac agctccgttc
       61 ctcacgcctg ccctacccgt ctgtccgtct gtcccgctgc ccatccgagg ggccactcca
      121 ccctggaccc aagatgacgt cggttgccaa ggtgtattac agccaaacca ctcagacaga
      181 aagccggccc ctaatgggcc cagggatacg acggaggaga gtcctgacaa aagatggccg
      241 cagcaatgtg agaatggagc acattgctga caagcgcttc ctctacctca aggacctgtg
      301 gacaaccttt attgacatgc agtggcgcta caagcttctg cttttctctg caacctttgc
      361 aggcacctgg ttcctctttg gtgtggtgtg gtatctggta gctgtagccc atggggacct
      421 gctggagctg ggacccccag ccaaccatac cccctgtgtg gtacaggtgc acacgctcac
      481 cggggccttc ctcttctccc ttgagtccca gaccaccatt ggctatggct tccgctacat
      541 cagtgaggag tgcccactgg ccatcgtgct tcttattgcc cagctggtgc tcaccaccat
      601 cctggagatc ttcatcacgg gtaccttcct ggcaaagatt gcccggccca agaagcgggc
      661 ggagaccatc cgtttcagcc agcatgcggt tgtagctgca cacaatggaa agccctgtct
      721 tatgatccga gtcgccaaca tgcgtaagag cctcctcatt ggctgccagg tgacaggcaa
      781 actgcttcag acccaccaga cgaaggaggg tgagaacatc cggctcaacc aggtcaatgt
      841 gactttccaa gtggacacgg cttctgacag ccccttcctc atcctgcccc ttaccttcta
      901 ccatgtggtg gatgagacca gtcccttgaa agacctgccc ctccgcagtg gtgagggtga
      961 cttcgagctg gtgctgatcc taagtgggac agtggaatcc accagcgcca cctgccaggt
     1021 gcgcacttcc tatctgccgg aggagatcct gtggggctac gagttcacac ccgccatctc
     1081 gctgtcagcc agtggcaaat acatagcaga ctttagcctt tttgaccaag tcgtgaaagt
     1141 agcctctccg agtggcctcc gtgacaccag tgtacgctac agagaccctg aaaagctcaa
     1201 gttggaggag tcattaaggg agcaggatga gaaggagggc agtgccatta gttttctcaa
     1261 gtggacactt tcttaggata cccagttccc acatagatgc ctctgctccc agagaactga
     1321 agttgacccg ggagatataa agcacacagg cacagccacc acacctgctc ctgacctgaa
     1381 tactgaactc ttcattgtgg ggtgactaat gcagagctat tgtctaaaac cttgaacctg
     1441 gcctccaggc agccctgggg ggatctgttt ccctgtgtcc catgaaagta atgaccttcc
     1501 ccaatatgtt cccctggaaa aaatccaacg cccaggcccc acagaaaggt ctggaaatgg
     1561 tgttccagat tacactgtcc ctggcttctc tgattctttc ttgcccagcc cactctcacc
     1621 taaacccaac tttggaggaa gggggagaaa atgcaagggc cttcctctct taccactaaa
     1681 actagactca cagggcacag agtccccagg aaagttaaac caaccaaatg ggatgagtac
     1741 attctccgat ttccagactg ctgtatagag cttctgggaa ttggcaatgc tttgttaagg
     1801 tttgggcaga ggcaggactc tgtggctggc agatactatt caccctgtta ctcctcccag
     1861 tgcccttctg aaaagtgcca gctattttgt taggcagtgc tgggagggaa ggaaattata
     1921 cctcctgatc aaataaccat ggtctccctc agccattcct gagacagtat aaaatgaata
     1981 tcagtctcat ctctcctctc ctctgctatg aagccagttt caggcaagtt aaaaggcata
     2041 ctttacgaga tcagactcag gccactcctt gttccctgat ggggactgtg gtatggggtc
     2101 aggaagggtg tatgggcacc agaactttct ctaaagctcc aaatcccaag agtgcttcct
     2161 attctcattt aggtaccaag ggacactctc ccccacccca aatgatttgg cacagagtcc
     2221 ctgtatgaat caagtggcag tttatttaag gtggaccagc cagttgttat aagctacaca
     2281 tttatccaga atgagtacct gcatctgtgt gcagagcctc acagagaaac ccacgaaatt
     2341 tggaggctgg gcccatggtc accatttact acaactgcac aagatcctct tatattgatc
     2401 tctccttgaa ctcaactaac tatatcttga agatgaagac ccttcattcc ctacttactg
     2461 taaaccccac catcactacc tagctctcaa gaaaacaaga accggaacaa cttgaaaatc
     2521 tgagacagag aacagaaggc aaagagccag cttctgggct ctcaacttta ttcaaatgtt
     2581 agactcactt gatttctttc aacgtgtgtg tgtgtgtgtg tgtgtgtatc ttcttatcca
     2641 ttagcaagtt atcctccatc aagtttcttc tgcacagagc tgcttccctc ctgagggaaa
     2701 cactctcttc ccattcccct gctgtctatt ccaagcctcc agaatcctca gattcttgga
     2761 taacaaaatg agaacacttt ctgacttaac ttttttgact ctcctgcacg attccacact
     2821 ttcctttaaa ttgcacttta aatcatactc tcctcttaat acaacctggc ttattctccc
     2881 ataagcccca tcagagagca atgcccctct ccctcaactc taagtggttc tttagactac
     2941 agcccccctc tcctctgagc tgaaatcatc tttcaggcta tcaggcaagc tttagaagca
     3001 gccaggtctg atgagaaatg ggatccctga ccacaccaac catggacttg gaatgtcagg
     3061 agagcactgg gcacagatct taagggagga gatttcagag gacgggcaac acaactgatg
     3121 ggggaggata ctcagggtat gaagatgagg aagggtggtg ctgcgggatc tggtgaaatc
     3181 aatgaaaccc ttgagtgtta cttgggctag caggtaagag gtaggtggag gctcagggaa
     3241 ttaagctatg atatataaat gaaaggttta tctaagaaag agaaacagat tttatatata
     3301 tgtagagaga tgtatataga tgtatatagg accaaatata ctgaatgtac agaaagaaag
     3361 tattcagaga gcttagcatg ggggcagata tcttgctctg gtttggaggt aggactcccc
     3421 agattcccag acttacagcc agtgatcctg gtttcaacat ggaagtgaga tacctgacta
     3481 aggctttcag gtttgatgac gggaaaggga ggggtggaag ctgctcttca gaaataaaga
     3541 ggcttccaat gaggtttctg acaaaccctg tgctgctgac aggaccagga agaggggaga
     3601 taagaggaac atgaggaggg agacactcca tctgaggaaa tctaggagaa tctactactt
     3661 aggctgtgcg ctcccatccc cagcagtgtc ctgtgactgt agcacttaaa aaataaaatc
     3721 ctgtttccct ctcttaaggt acactgtatt tccccttctt ccacaggggt ggggcaactg
     3781 cagctccagc cccgggaggt gatggctatt caactaagaa gctgaacact tcagtgtgcg
     3841 ggaggcacga aagggaagcc tcaactctag agtctaaatg ccaggactaa agagctgttg
     3901 ggcccaagat actcccaagg cagaggatca gatttctgta tggttgcaag cagcccaaag
     3961 agaatgccct ctatgctagg agagtcccaa tcctggcatc tgagcatggg ggagggcgtg
     4021 gtgctttagc tttgtatctc tgtatgaaaa tgaggactgt gggtaccagc tgccctaggg
     4081 gatggggaga ggcttctgaa atccctactc tgtgcttcac ctcattacct gcccaacctc
     4141 ctaccccagc ctgtcagcta ataagaccat ccagggattt ctctctgagg cctgagaaga
     4201 gaaaggaagc cacttatact attgctacaa gccagggaca ctgccccctc ccaaggctgc
     4261 taccctggtc ctttaccctt gctagttaac ctagcttatt tgtaaaataa cacactacct
     4321 ttgctgtaaa gttagcctgg gctccggctc agtaatggcc aactctactg aaggagaaat
     4381 atctagggat gatttttcca ttcattgcat taaagactaa acaaggtcaa atgtacctag
     4441 gaaaaaagac atgtgagtta ttttggttta ttttattctt gtctgttcag aacaagttac
     4501 taaataaaat ggctgaatct ctgtt
//
LOCUS       XM_032648107            5164 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium inwardly rectifying channel
            subfamily J member 10 (KCNJ10), transcript variant X2, mRNA.
ACCESSION   XM_032648107
VERSION     XM_032648107.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5164
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5164
                     /gene="KCNJ10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761818"
     CDS             134..1273
                     /gene="KCNJ10"
                     /codon_start=1
                     /product="ATP-sensitive inward rectifier potassium channel
                     10 isoform X2"
                     /protein_id="XP_032503998.1"
                     /db_xref="GeneID:116761818"
                     /translation="MTSVAKVYYSQTTQTESRPLMGPGIRRRRVLTKDGRSNVRMEHI
                     ADKRFLYLKDLWTTFIDMQWRYKLLLFSATFAGTWFLFGVVWYLVAVAHGDLLELGPP
                     ANHTPCVVQVHTLTGAFLFSLESQTTIGYGFRYISEECPLAIVLLIAQLVLTTILEIF
                     ITGTFLAKIARPKKRAETIRFSQHAVVAAHNGKPCLMIRVANMRKSLLIGCQVTGKLL
                     QTHQTKEGENIRLNQVNVTFQVDTASDSPFLILPLTFYHVVDETSPLKDLPLRSGEGD
                     FELVLILSGTVESTSATCQVRTSYLPEEILWGYEFTPAISLSASGKYIADFSLFDQVV
                     KVASPSGLRDTSVRYRDPEKLKLEESLREQDEKEGSAISVRISNV"
     misc_feature    224..649
                     /gene="KCNJ10"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; Region: IRK; pfam01007"
                     /db_xref="CDD:460023"
     misc_feature    668..1195
                     /gene="KCNJ10"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; Region: IRK_C; pfam17655"
                     /db_xref="CDD:465439"
ORIGIN      
        1 ttatctgatc ccggctccgg gtttaagagt cctggccctg cccgtcgcac agctccgttc
       61 ctcacgcctg ccctacccgt ctgtccgtct gtcccgctgc ccatccgagg ggccactcca
      121 ccctggaccc aagatgacgt cggttgccaa ggtgtattac agccaaacca ctcagacaga
      181 aagccggccc ctaatgggcc cagggatacg acggaggaga gtcctgacaa aagatggccg
      241 cagcaatgtg agaatggagc acattgctga caagcgcttc ctctacctca aggacctgtg
      301 gacaaccttt attgacatgc agtggcgcta caagcttctg cttttctctg caacctttgc
      361 aggcacctgg ttcctctttg gtgtggtgtg gtatctggta gctgtagccc atggggacct
      421 gctggagctg ggacccccag ccaaccatac cccctgtgtg gtacaggtgc acacgctcac
      481 cggggccttc ctcttctccc ttgagtccca gaccaccatt ggctatggct tccgctacat
      541 cagtgaggag tgcccactgg ccatcgtgct tcttattgcc cagctggtgc tcaccaccat
      601 cctggagatc ttcatcacgg gtaccttcct ggcaaagatt gcccggccca agaagcgggc
      661 ggagaccatc cgtttcagcc agcatgcggt tgtagctgca cacaatggaa agccctgtct
      721 tatgatccga gtcgccaaca tgcgtaagag cctcctcatt ggctgccagg tgacaggcaa
      781 actgcttcag acccaccaga cgaaggaggg tgagaacatc cggctcaacc aggtcaatgt
      841 gactttccaa gtggacacgg cttctgacag ccccttcctc atcctgcccc ttaccttcta
      901 ccatgtggtg gatgagacca gtcccttgaa agacctgccc ctccgcagtg gtgagggtga
      961 cttcgagctg gtgctgatcc taagtgggac agtggaatcc accagcgcca cctgccaggt
     1021 gcgcacttcc tatctgccgg aggagatcct gtggggctac gagttcacac ccgccatctc
     1081 gctgtcagcc agtggcaaat acatagcaga ctttagcctt tttgaccaag tcgtgaaagt
     1141 agcctctccg agtggcctcc gtgacaccag tgtacgctac agagaccctg aaaagctcaa
     1201 gttggaggag tcattaaggg agcaggatga gaaggagggc agtgccatta gtgtacgcat
     1261 cagcaatgtc tgatggcttg gttccccacc tccccgtact tctggtctct tttcctcttt
     1321 tggcatcctg ggtgagggat attacccagg cttactggac agccccagaa gcacccttct
     1381 ccactccctc ttctttaacc cagttggcct gtagtagtct aggccaactg gacttcctcc
     1441 cgttgttccc ttcacctcac cgcacttcca ccccaagatg cacacgtccc ttaagccagg
     1501 atgggggaag gagagggaag attaggctga agtggcttag aaggcctcag ccatgcctgg
     1561 agacttacat taggaggacc atgcagttgg atggataggc tccccccacc ccgccacctc
     1621 tcaccaccac caccagaaag tttggtgctt tgaggctgga gtcccctccc tatctttcca
     1681 cttagcaagt tccctaaggc aagactctct ctctgatggt ccctttgggg tttgtgccct
     1741 cagaaatata ggagtccaga atcattttat tctgaagtct ctaccaaaac ctgttgaaag
     1801 aagccagggt ttttcatggt gtagttaatt tctgttggca actcctgact ataacctggg
     1861 accttggtcc ccattgttct cctctttcta gtttctcaag tggacacttt cttaggatac
     1921 ccagttccca catagatgcc tctgctccca gagaactgaa gttgacccgg gagatataaa
     1981 gcacacaggc acagccacca cacctgctcc tgacctgaat actgaactct tcattgtggg
     2041 gtgactaatg cagagctatt gtctaaaacc ttgaacctgg cctccaggca gccctggggg
     2101 gatctgtttc cctgtgtccc atgaaagtaa tgaccttccc caatatgttc ccctggaaaa
     2161 aatccaacgc ccaggcccca cagaaaggtc tggaaatggt gttccagatt acactgtccc
     2221 tggcttctct gattctttct tgcccagccc actctcacct aaacccaact ttggaggaag
     2281 ggggagaaaa tgcaagggcc ttcctctctt accactaaaa ctagactcac agggcacaga
     2341 gtccccagga aagttaaacc aaccaaatgg gatgagtaca ttctccgatt tccagactgc
     2401 tgtatagagc ttctgggaat tggcaatgct ttgttaaggt ttgggcagag gcaggactct
     2461 gtggctggca gatactattc accctgttac tcctcccagt gcccttctga aaagtgccag
     2521 ctattttgtt aggcagtgct gggagggaag gaaattatac ctcctgatca aataaccatg
     2581 gtctccctca gccattcctg agacagtata aaatgaatat cagtctcatc tctcctctcc
     2641 tctgctatga agccagtttc aggcaagtta aaaggcatac tttacgagat cagactcagg
     2701 ccactccttg ttccctgatg gggactgtgg tatggggtca ggaagggtgt atgggcacca
     2761 gaactttctc taaagctcca aatcccaaga gtgcttccta ttctcattta ggtaccaagg
     2821 gacactctcc cccaccccaa atgatttggc acagagtccc tgtatgaatc aagtggcagt
     2881 ttatttaagg tggaccagcc agttgttata agctacacat ttatccagaa tgagtacctg
     2941 catctgtgtg cagagcctca cagagaaacc cacgaaattt ggaggctggg cccatggtca
     3001 ccatttacta caactgcaca agatcctctt atattgatct ctccttgaac tcaactaact
     3061 atatcttgaa gatgaagacc cttcattccc tacttactgt aaaccccacc atcactacct
     3121 agctctcaag aaaacaagaa ccggaacaac ttgaaaatct gagacagaga acagaaggca
     3181 aagagccagc ttctgggctc tcaactttat tcaaatgtta gactcacttg atttctttca
     3241 acgtgtgtgt gtgtgtgtgt gtgtgtatct tcttatccat tagcaagtta tcctccatca
     3301 agtttcttct gcacagagct gcttccctcc tgagggaaac actctcttcc cattcccctg
     3361 ctgtctattc caagcctcca gaatcctcag attcttggat aacaaaatga gaacactttc
     3421 tgacttaact tttttgactc tcctgcacga ttccacactt tcctttaaat tgcactttaa
     3481 atcatactct cctcttaata caacctggct tattctccca taagccccat cagagagcaa
     3541 tgcccctctc cctcaactct aagtggttct ttagactaca gcccccctct cctctgagct
     3601 gaaatcatct ttcaggctat caggcaagct ttagaagcag ccaggtctga tgagaaatgg
     3661 gatccctgac cacaccaacc atggacttgg aatgtcagga gagcactggg cacagatctt
     3721 aagggaggag atttcagagg acgggcaaca caactgatgg gggaggatac tcagggtatg
     3781 aagatgagga agggtggtgc tgcgggatct ggtgaaatca atgaaaccct tgagtgttac
     3841 ttgggctagc aggtaagagg taggtggagg ctcagggaat taagctatga tatataaatg
     3901 aaaggtttat ctaagaaaga gaaacagatt ttatatatat gtagagagat gtatatagat
     3961 gtatatagga ccaaatatac tgaatgtaca gaaagaaagt attcagagag cttagcatgg
     4021 gggcagatat cttgctctgg tttggaggta ggactcccca gattcccaga cttacagcca
     4081 gtgatcctgg tttcaacatg gaagtgagat acctgactaa ggctttcagg tttgatgacg
     4141 ggaaagggag gggtggaagc tgctcttcag aaataaagag gcttccaatg aggtttctga
     4201 caaaccctgt gctgctgaca ggaccaggaa gaggggagat aagaggaaca tgaggaggga
     4261 gacactccat ctgaggaaat ctaggagaat ctactactta ggctgtgcgc tcccatcccc
     4321 agcagtgtcc tgtgactgta gcacttaaaa aataaaatcc tgtttccctc tcttaaggta
     4381 cactgtattt ccccttcttc cacaggggtg gggcaactgc agctccagcc ccgggaggtg
     4441 atggctattc aactaagaag ctgaacactt cagtgtgcgg gaggcacgaa agggaagcct
     4501 caactctaga gtctaaatgc caggactaaa gagctgttgg gcccaagata ctcccaaggc
     4561 agaggatcag atttctgtat ggttgcaagc agcccaaaga gaatgccctc tatgctagga
     4621 gagtcccaat cctggcatct gagcatgggg gagggcgtgg tgctttagct ttgtatctct
     4681 gtatgaaaat gaggactgtg ggtaccagct gccctagggg atggggagag gcttctgaaa
     4741 tccctactct gtgcttcacc tcattacctg cccaacctcc taccccagcc tgtcagctaa
     4801 taagaccatc cagggatttc tctctgaggc ctgagaagag aaaggaagcc acttatacta
     4861 ttgctacaag ccagggacac tgccccctcc caaggctgct accctggtcc tttacccttg
     4921 ctagttaacc tagcttattt gtaaaataac acactacctt tgctgtaaag ttagcctggg
     4981 ctccggctca gtaatggcca actctactga aggagaaata tctagggatg atttttccat
     5041 tcattgcatt aaagactaaa caaggtcaaa tgtacctagg aaaaaagaca tgtgagttat
     5101 tttggtttat tttattcttg tctgttcaga acaagttact aaataaaatg gctgaatctc
     5161 tgtt
//
LOCUS       XM_032648120            1656 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus C2 calcium dependent domain containing 4D
            (C2CD4D), transcript variant X1, mRNA.
ACCESSION   XM_032648120
VERSION     XM_032648120.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1656
                     /gene="C2CD4D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761826"
     CDS             483..1544
                     /gene="C2CD4D"
                     /codon_start=1
                     /product="C2 calcium-dependent domain-containing protein
                     4D"
                     /protein_id="XP_032504011.1"
                     /db_xref="GeneID:116761826"
                     /translation="MWLLKKAGYWVGAAEPRARWAPSGLFPKRRTPCPLARACPNVLT
                     PDRIPQFFIPPRLPDPGGAELLSGRDVDGRGLPEACSLPHLAGREGWAFLPESPHTRR
                     RESLFHSPPPAPAGGLPPAQSRLHVSSPDLRLCRAPDSDTASSPDSSPFGSPRPGPGR
                     PRPPRPRSLSPEEASSADTSLYAPRRAGPPTPPLFHLDFLCRQLRPAKESVLRLEPLG
                     GQLRLSAEYQAWPGRLRLRLVSAEGLPGSRAGPRSGGGGCCVVLRLRPRARARGQRSR
                     VVKCSANPIFNEDFFFDGLGPPDLAAHSLRAKVLDRGAGFRRDVLLGECETPLTALLP
                     TLRGGLGPGASLAPAHLSL"
     misc_feature    1176..1484
                     /gene="C2CD4D"
                     /note="C2 domain; Region: C2; pfam00168"
                     /db_xref="CDD:425499"
ORIGIN      
        1 tgcccactaa tggctgtctc ccttttcact gcagccctcc ccaactccca agcatccagg
       61 gcccagcaga gaaggcccca gggcacaggg ctggcttgct gctagcaacc tgaagggagg
      121 agttaagaag gccggcctga tggccgcaaa gacagagctg tgtttatcca ggaaaagagg
      181 tcgtacgtag gcaacggagg cccctgccag ttcctcccaa gactgggctg gggtagcaag
      241 ctggagagga cgctgctcct ccaccccggg gctctgaacg cctcctggcc agaggccagg
      301 acccagaggc ggcccaccag tgatgcctgc actctgggcg cctgaccgag cctgctgccg
      361 tgggctcaga ctcccaggca gaaagtcgga acatcgcgct ccctgaggcc cccacctgag
      421 acgctgggtt tggaccctct cggcctcgtg gaactcggac tttcagcccc ccaccccacc
      481 gcatgtggct cttgaagaaa gctggctact gggtgggggc cgcggagccc agggcccggt
      541 gggcgccctc cggcctgttt cctaagcgcc gcaccccgtg cccgctggct cgcgcctgcc
      601 ccaacgtcct cacccccgat cgcattccgc agttcttcat cccgcctcgg ctccccgacc
      661 caggcggcgc cgagctcctc agcgggcgcg acgtggacgg ccgcggcctc cccgaggcct
      721 gttcgctgcc gcacttggca ggccgcgaag gttgggcctt cctgcccgaa agcccgcaca
      781 cgcgccggcg cgagtccctg ttccactcgc cgccgcccgc cccggccggg gggctgcccc
      841 ccgcgcagtc caggctgcac gtctcctccc cggacctgcg cctctgccgg gcccccgaca
      901 gcgacacggc ctcgtcgccc gactcgtcgc cctttggctc gccgcggcca ggccccggcc
      961 ggccccggcc gcccaggccg cgctcgctgt ccccggagga ggcgagctcg gccgacacca
     1021 gcctgtacgc gccgcgccga gcggggccgc ccacgccgcc gctcttccac ctcgacttct
     1081 tgtgccgcca gctgcggccg gccaaggaga gcgtgctgcg cctcgagccc ctgggcgggc
     1141 agctgcggct atccgccgag taccaggcct ggcccgggcg gctgcggctg cgcctagtga
     1201 gcgccgaggg cctgcccggg tcgcgggctg gccccaggag cggcggcggc ggctgctgcg
     1261 tggtgctgag gctgcggccg cgcgcccggg cgcggggcca gcggagccgc gtggtcaaat
     1321 gcagcgccaa ccccatcttc aatgaggact ttttcttcga cgggctcggc ccgcctgacc
     1381 tggccgccca cagtctgagg gccaaggtgc tggacagggg agcaggcttc cgcagggacg
     1441 tgctgctggg ggagtgtgag acgcccctga ctgccctgct gcccaccctg cgtggtgggc
     1501 taggtcccgg agcctccctg gcgcctgccc atctcagcct gtagcctgag agactgtctc
     1561 ttcctcagga ggtctccacc gggtctgcag tcctcattct ttccatctgc ccggcatgca
     1621 tttatttttg ctaataaaat atctgtttgt ctctgg
//
LOCUS       XM_032648128            1674 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus C2 calcium dependent domain containing 4D
            (C2CD4D), transcript variant X2, mRNA.
ACCESSION   XM_032648128
VERSION     XM_032648128.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1674
                     /gene="C2CD4D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761826"
     CDS             501..1562
                     /gene="C2CD4D"
                     /codon_start=1
                     /product="C2 calcium-dependent domain-containing protein
                     4D"
                     /protein_id="XP_032504019.1"
                     /db_xref="GeneID:116761826"
                     /translation="MWLLKKAGYWVGAAEPRARWAPSGLFPKRRTPCPLARACPNVLT
                     PDRIPQFFIPPRLPDPGGAELLSGRDVDGRGLPEACSLPHLAGREGWAFLPESPHTRR
                     RESLFHSPPPAPAGGLPPAQSRLHVSSPDLRLCRAPDSDTASSPDSSPFGSPRPGPGR
                     PRPPRPRSLSPEEASSADTSLYAPRRAGPPTPPLFHLDFLCRQLRPAKESVLRLEPLG
                     GQLRLSAEYQAWPGRLRLRLVSAEGLPGSRAGPRSGGGGCCVVLRLRPRARARGQRSR
                     VVKCSANPIFNEDFFFDGLGPPDLAAHSLRAKVLDRGAGFRRDVLLGECETPLTALLP
                     TLRGGLGPGASLAPAHLSL"
     misc_feature    1194..1502
                     /gene="C2CD4D"
                     /note="C2 domain; Region: C2; pfam00168"
                     /db_xref="CDD:425499"
ORIGIN      
        1 tgcccactaa tggctgtctc ccttttcact gcagccctcc ccaactccca agcatccagg
       61 gcccagcaga gaaggcccca gggcacaggg ctggcttgct gctagcaacc tgaagggagg
      121 agttaagaag gccggcctga tggccgcaaa gacagagctg tgtttatcca ggaaaagagg
      181 tcgtacgtag gcaacggagg cccctgccag ttcctcccaa gactgggctg gggtagcaag
      241 ctggagagga cgctgctcct ccaccccggg gctctgaacg cctcctggcc agaggccagg
      301 acccagaggc ggcccaccag tgatgcctgc actctgggcg cctgaccgag cctgctgccg
      361 tgggctcaga ctcccaggca gaaagtcgga acatcgcgct ccctgaggtg cggcgagggg
      421 gtgcggcccc cacctgagac gctgggtttg gaccctctcg gcctcgtgga actcggactt
      481 tcagcccccc accccaccgc atgtggctct tgaagaaagc tggctactgg gtgggggccg
      541 cggagcccag ggcccggtgg gcgccctccg gcctgtttcc taagcgccgc accccgtgcc
      601 cgctggctcg cgcctgcccc aacgtcctca cccccgatcg cattccgcag ttcttcatcc
      661 cgcctcggct ccccgaccca ggcggcgccg agctcctcag cgggcgcgac gtggacggcc
      721 gcggcctccc cgaggcctgt tcgctgccgc acttggcagg ccgcgaaggt tgggccttcc
      781 tgcccgaaag cccgcacacg cgccggcgcg agtccctgtt ccactcgccg ccgcccgccc
      841 cggccggggg gctgcccccc gcgcagtcca ggctgcacgt ctcctccccg gacctgcgcc
      901 tctgccgggc ccccgacagc gacacggcct cgtcgcccga ctcgtcgccc tttggctcgc
      961 cgcggccagg ccccggccgg ccccggccgc ccaggccgcg ctcgctgtcc ccggaggagg
     1021 cgagctcggc cgacaccagc ctgtacgcgc cgcgccgagc ggggccgccc acgccgccgc
     1081 tcttccacct cgacttcttg tgccgccagc tgcggccggc caaggagagc gtgctgcgcc
     1141 tcgagcccct gggcgggcag ctgcggctat ccgccgagta ccaggcctgg cccgggcggc
     1201 tgcggctgcg cctagtgagc gccgagggcc tgcccgggtc gcgggctggc cccaggagcg
     1261 gcggcggcgg ctgctgcgtg gtgctgaggc tgcggccgcg cgcccgggcg cggggccagc
     1321 ggagccgcgt ggtcaaatgc agcgccaacc ccatcttcaa tgaggacttt ttcttcgacg
     1381 ggctcggccc gcctgacctg gccgcccaca gtctgagggc caaggtgctg gacaggggag
     1441 caggcttccg cagggacgtg ctgctggggg agtgtgagac gcccctgact gccctgctgc
     1501 ccaccctgcg tggtgggcta ggtcccggag cctccctggc gcctgcccat ctcagcctgt
     1561 agcctgagag actgtctctt cctcaggagg tctccaccgg gtctgcagtc ctcattcttt
     1621 ccatctgccc ggcatgcatt tatttttgct aataaaatat ctgtttgtct ctgg
//
LOCUS       XM_032648143            2999 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 326 (ZNF326),
            transcript variant X1, mRNA.
ACCESSION   XM_032648143
VERSION     XM_032648143.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2999
                     /gene="ZNF326"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 9
                     Proteins, and 89% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761834"
     CDS             399..2159
                     /gene="ZNF326"
                     /codon_start=1
                     /product="DBIRD complex subunit ZNF326 isoform X1"
                     /protein_id="XP_032504034.1"
                     /db_xref="GeneID:116761834"
                     /translation="MDFEDDYTHSACRNTYQSFNGMDRDYGPGSYGGMDRDYGHGSCG
                     GQRSMDSYLNQSYGMDSHSGGGGGSRFGPYESYDSRSSLGGRDLYRSGYGFNEPEQSR
                     FGGSYGGRFESSYRNSLDSFGGRNQGGSSWEAPYSRSKLRPGFMEDRGRENYSSYSSF
                     SSPHMKPAPVGSRGRGTPAYPESTFGSRNYDAFGGPSTGRGRGRGHMSDFGSIHRPGI
                     VVDYQNKPTNVTVTAARGIKRKMMQPFNKPGGTFIKKPKLAKPVEKMSLSKSPTKTDP
                     KNEEEEKRRIEARREKQRRRREKNSEKYGDGYRMAFTCSFCKFRTFEEKDIELHLESS
                     SHQETLDHIQKQTKFDKVVMEFLHECMVNKFKKTSIRKQQTNNQTEVVKIIEKDVMEG
                     VTADDHMMKVETVHCSACSVYIPALHSSVQQHLKSPDHIKGKQAYKEQIKRESVLTAT
                     SILNNPIVKARYERFIKGENPFEIQDHSQDQQIEGDEEEEEKIDEPIEEEEEEEEEEE
                     EEVGEVEEVEEVEEVEEVGDGGGVEGVGDTEEGGDVEGEGEVGAVEEGEGEVEGVGEV
                     EEEEAKEEPVSFPVDQPEEN"
     misc_feature    1407..1814
                     /gene="ZNF326"
                     /note="A-kinase anchoring protein 95 (AKAP95); Region:
                     AKAP95; pfam04988"
                     /db_xref="CDD:461509"
ORIGIN      
        1 agaatcaaac atggcgggcc gcagccagac cttccagaac acccagctct ctttcccacg
       61 accccggcca gtctgtgggg ctcctttttt ttccaccttc cttacccctc gtccgctcct
      121 agagggtcag cacctgggag cgtgacagca gacctgcttc ccgcccccac tccagggccc
      181 gcccaccagc ccgcgccagc caatcgcagg ccgcgctgcg acggccggca gcgacggccg
      241 gccccgcctc ccagcctcgc tgtggcctgc ggctcccggg ccgggagcgc cgctcttggt
      301 cgcgtttact ggctgtgtga aaccgcgggt cacgggtgct cgccttccgc cacagctcag
      361 cccagcgccg ccgaggccgt cggccccgag cctccgccat ggacttcgag gacgattaca
      421 ctcactctgc ttgcagaaat acttatcaga gctttaatgg aatggatcgt gattatggcc
      481 ccggatctta tggagggatg gatcgtgact atggccatgg atcctgtggg ggtcaaagat
      541 ccatggactc ctacctaaac cagtcatatg gcatggacag tcacagtggt ggtggtgggg
      601 gtagcaggtt tggaccttat gagtcttacg actccaggtc ttctctgggt gggcgagatc
      661 tgtacagatc tggctatggt tttaatgaac ccgaacaaag ccgcttcgga ggtagttatg
      721 gtggtcgatt tgagagctcc taccggaata gccttgactc tttcggaggt agaaaccagg
      781 gcgggtctag ctgggaagca ccttactccc gttcaaaatt gaggcctggg tttatggagg
      841 acagaggaag agagaattac tcttcctaca gcagtttttc ttcaccccat atgaagcctg
      901 cacctgtagg ctctcggggg agaggaacgc ctgcttatcc tgaaagtacg tttggaagca
      961 gaaactatga tgcttttgga ggaccatcaa caggcagagg ccgaggccga ggacatatga
     1021 gtgattttgg aagcattcat agacctggaa ttgttgttga ctatcaaaac aaacccacca
     1081 atgtgacagt tactgctgca agaggaataa agagaaaaat gatgcaacca tttaataagc
     1141 ctggtggaac ctttatcaag aaacccaagc tagcaaaacc tgtggagaag atgagcctca
     1201 gcaaatcacc cacaaaaaca gatcctaaaa atgaagaaga agaaaagcga cgaattgagg
     1261 ctcggcgaga gaaacaaagg cgcagaagag aaaaaaacag tgagaaatat ggagatggat
     1321 acagaatggc attcacatgt tcattttgta aatttcgaac gtttgaagaa aaagatattg
     1381 aactacatct ggaaagttct tcacaccagg aaacattaga tcatattcaa aaacaaacca
     1441 aattcgataa agtagttatg gaatttttgc atgaatgtat ggtaaataaa ttcaagaaaa
     1501 catctattcg taagcaacag acaaataatc aaacagaagt agtcaaaata attgaaaagg
     1561 atgttatgga aggtgttact gcagatgatc acatgatgaa agtagagact gttcactgca
     1621 gtgcttgcag tgtgtatatc cctgctttac atagctcagt tcagcagcac ttaaaatctc
     1681 ctgatcatat caaagggaag caggcttata aggaacaaat aaaaagagag agtgtcttga
     1741 ctgctacaag cattttaaat aatccaatag tgaaggcgcg atatgaacgt tttattaagg
     1801 gtgagaatcc ctttgaaatt caagatcatt ctcaagatca gcaaatagaa ggagatgagg
     1861 aggaggagga aaagattgat gaacctattg aagaagagga agaggaagag gaggaagaag
     1921 aagaggaagt gggggaagta gaggaagtag aagaagtgga ggaagtagag gaagtgggag
     1981 acggtggagg agtagaagga gtgggggaca cagaggaagg aggggacgta gagggagagg
     2041 gggaagtagg ggcagtggag gaaggagagg gagaagtaga gggagtaggg gaagtagagg
     2101 aagaagaagc aaaggaagag cctgtcagct tccccgttga ccaaccagaa gaaaattaaa
     2161 tataaggtat tagtcagttt taaaagaagc tttaaatttc tgtcccaatg aggaaaaggg
     2221 taagaatatc agtagtttaa aatgagagtt aatacccatg ttgcatgcat tccacagatt
     2281 acaattcgtt ttatataatt tctaaatgtt tggcatttgt ttaataaaat gaaggtaaga
     2341 ctattttagt ttagttttta tagctaccta acatagattc aataaattgt ttgtataatt
     2401 tttaagctta atttttatta ctttattggt gttgaggata acagatgtgt attgttagtg
     2461 tatctgttct aatcatttga acttaaatgc tgctcttggg agtgtatatt caagtatgca
     2521 ttaatgtttt gaatacttac cctagaagag ataaattggg caagtatttt gtgctctgtg
     2581 tattttttta ctgcattgga cattgaatat agtaatttgc gttaagatac gcttgaagcc
     2641 tttttgtgac catgtttccc tttgtagcaa taaaatgttt tttacaaaaa ctctctccct
     2701 ggattagcaa tttaaaatga aacagaattc atcaattaaa tgaatatata aaatcaggat
     2761 ttgccttaat gtatgagttc agcttataag tgttttaaga taattggaag acttgaatta
     2821 aaaaaatgta cttcactttt ttttaagtat gattaaaata ttttaaaaca tgtttcaaat
     2881 agaagtcagt ctgtaactga cctttctata tttgttttaa ttcattcctt ttttctgtgc
     2941 ctgtgtcaga tcttgaaatc ttcttggaaa tacatttgaa tacaaataat ttttcatag
//
LOCUS       XM_032648150            2329 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 326 (ZNF326),
            transcript variant X2, mRNA.
ACCESSION   XM_032648150
VERSION     XM_032648150.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2329
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2329
                     /gene="ZNF326"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761834"
     CDS             154..1617
                     /gene="ZNF326"
                     /codon_start=1
                     /product="DBIRD complex subunit ZNF326 isoform X2"
                     /protein_id="XP_032504041.1"
                     /db_xref="GeneID:116761834"
                     /translation="MAWTVTVVVVGVAGLDLMSLTTPGLLWVGEICTDLAMVLMNPNK
                     AASEVVMVVDLRAPTGIALTLSEPAPVGSRGRGTPAYPESTFGSRNYDAFGGPSTGRG
                     RGRGHMSDFGSIHRPGIVVDYQNKPTNVTVTAARGIKRKMMQPFNKPGGTFIKKPKLA
                     KPVEKMSLSKSPTKTDPKNEEEEKRRIEARREKQRRRREKNSEKYGDGYRMAFTCSFC
                     KFRTFEEKDIELHLESSSHQETLDHIQKQTKFDKVVMEFLHECMVNKFKKTSIRKQQT
                     NNQTEVVKIIEKDVMEGVTADDHMMKVETVHCSACSVYIPALHSSVQQHLKSPDHIKG
                     KQAYKEQIKRESVLTATSILNNPIVKARYERFIKGENPFEIQDHSQDQQIEGDEEEEE
                     KIDEPIEEEEEEEEEEEEEVGEVEEVEEVEEVEEVGDGGGVEGVGDTEEGGDVEGEGE
                     VGAVEEGEGEVEGVGEVEEEEAKEEPVSFPVDQPEEN"
     misc_feature    865..1272
                     /gene="ZNF326"
                     /note="A-kinase anchoring protein 95 (AKAP95); Region:
                     AKAP95; pfam04988"
                     /db_xref="CDD:461509"
ORIGIN      
        1 attacactca ctctgcttgc agaaatactt atcagagctt taatggaatg gatcgtgatt
       61 atggccccgg atcttatgga gggatggatc gtgactatgg ccatggatcc tgtgggggtc
      121 aaagatccat ggactcctac ctaaaccagt catatggcat ggacagtcac agtggtggtg
      181 gtgggggtag caggtttgga ccttatgagt cttacgactc caggtcttct ctgggtgggc
      241 gagatctgta cagatctggc tatggtttta atgaacccga acaaagccgc ttcggaggta
      301 gttatggtgg tcgatttgag agctcctacc ggaatagcct tgactctttc ggagcctgca
      361 cctgtaggct ctcgggggag aggaacgcct gcttatcctg aaagtacgtt tggaagcaga
      421 aactatgatg cttttggagg accatcaaca ggcagaggcc gaggccgagg acatatgagt
      481 gattttggaa gcattcatag acctggaatt gttgttgact atcaaaacaa acccaccaat
      541 gtgacagtta ctgctgcaag aggaataaag agaaaaatga tgcaaccatt taataagcct
      601 ggtggaacct ttatcaagaa acccaagcta gcaaaacctg tggagaagat gagcctcagc
      661 aaatcaccca caaaaacaga tcctaaaaat gaagaagaag aaaagcgacg aattgaggct
      721 cggcgagaga aacaaaggcg cagaagagaa aaaaacagtg agaaatatgg agatggatac
      781 agaatggcat tcacatgttc attttgtaaa tttcgaacgt ttgaagaaaa agatattgaa
      841 ctacatctgg aaagttcttc acaccaggaa acattagatc atattcaaaa acaaaccaaa
      901 ttcgataaag tagttatgga atttttgcat gaatgtatgg taaataaatt caagaaaaca
      961 tctattcgta agcaacagac aaataatcaa acagaagtag tcaaaataat tgaaaaggat
     1021 gttatggaag gtgttactgc agatgatcac atgatgaaag tagagactgt tcactgcagt
     1081 gcttgcagtg tgtatatccc tgctttacat agctcagttc agcagcactt aaaatctcct
     1141 gatcatatca aagggaagca ggcttataag gaacaaataa aaagagagag tgtcttgact
     1201 gctacaagca ttttaaataa tccaatagtg aaggcgcgat atgaacgttt tattaagggt
     1261 gagaatccct ttgaaattca agatcattct caagatcagc aaatagaagg agatgaggag
     1321 gaggaggaaa agattgatga acctattgaa gaagaggaag aggaagagga ggaagaagaa
     1381 gaggaagtgg gggaagtaga ggaagtagaa gaagtggagg aagtagagga agtgggagac
     1441 ggtggaggag tagaaggagt gggggacaca gaggaaggag gggacgtaga gggagagggg
     1501 gaagtagggg cagtggagga aggagaggga gaagtagagg gagtagggga agtagaggaa
     1561 gaagaagcaa aggaagagcc tgtcagcttc cccgttgacc aaccagaaga aaattaaata
     1621 taaggtatta gtcagtttta aaagaagctt taaatttctg tcccaatgag gaaaagggta
     1681 agaatatcag tagtttaaaa tgagagttaa tacccatgtt gcatgcattc cacagattac
     1741 aattcgtttt atataatttc taaatgtttg gcatttgttt aataaaatga aggtaagact
     1801 attttagttt agtttttata gctacctaac atagattcaa taaattgttt gtataatttt
     1861 taagcttaat ttttattact ttattggtgt tgaggataac agatgtgtat tgttagtgta
     1921 tctgttctaa tcatttgaac ttaaatgctg ctcttgggag tgtatattca agtatgcatt
     1981 aatgttttga atacttaccc tagaagagat aaattgggca agtattttgt gctctgtgta
     2041 tttttttact gcattggaca ttgaatatag taatttgcgt taagatacgc ttgaagcctt
     2101 tttgtgacca tgtttccctt tgtagcaata aaatgttttt tacaaaaact ctctccctgg
     2161 attagcaatt taaaatgaaa cagaattcat caattaaatg aatatataaa atcaggattt
     2221 gccttaatgt atgagttcag cttataagtg ttttaagata attggaagac ttgaattaaa
     2281 aaaatgtact tcactttttt ttaagtatga ttaaaatatt ttaaaacat
//
LOCUS       XM_032648159            2275 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 326 (ZNF326),
            transcript variant X3, mRNA.
ACCESSION   XM_032648159
VERSION     XM_032648159.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2275
                     /gene="ZNF326"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761834"
     CDS             421..1563
                     /gene="ZNF326"
                     /codon_start=1
                     /product="DBIRD complex subunit ZNF326 isoform X3"
                     /protein_id="XP_032504050.1"
                     /db_xref="GeneID:116761834"
                     /translation="MSDFGSIHRPGIVVDYQNKPTNVTVTAARGIKRKMMQPFNKPGG
                     TFIKKPKLAKPVEKMSLSKSPTKTDPKNEEEEKRRIEARREKQRRRREKNSEKYGDGY
                     RMAFTCSFCKFRTFEEKDIELHLESSSHQETLDHIQKQTKFDKVVMEFLHECMVNKFK
                     KTSIRKQQTNNQTEVVKIIEKDVMEGVTADDHMMKVETVHCSACSVYIPALHSSVQQH
                     LKSPDHIKGKQAYKEQIKRESVLTATSILNNPIVKARYERFIKGENPFEIQDHSQDQQ
                     IEGDEEEEEKIDEPIEEEEEEEEEEEEEVGEVEEVEEVEEVEEVGDGGGVEGVGDTEE
                     GGDVEGEGEVGAVEEGEGEVEGVGEVEEEEAKEEPVSFPVDQPEEN"
     misc_feature    811..1218
                     /gene="ZNF326"
                     /note="A-kinase anchoring protein 95 (AKAP95); Region:
                     AKAP95; pfam04988"
                     /db_xref="CDD:461509"
ORIGIN      
        1 actggctgtg tgaaaccgcg ggtcacgggt gctcgccttc cgccacagct cagcccagcg
       61 ccgccgaggc cgtcggcccc gagcctccgc catggacttc gaggacgatt acactcactc
      121 tgcttgcaga aatacttatc agagctttaa tggaatggat cgtgattatg gccccggatc
      181 ttatggaggg atggatcgtg actatggcca tggatcctgt gggggtcaaa gatccatgga
      241 ctcctaccta aaccagtcat atggcatgga cagtcacagt ggtggtggtg ggggtagcag
      301 cctgcacctg taggctctcg ggggagagga acgcctgctt atcctgaaag tacgtttgga
      361 agcagaaact atgatgcttt tggaggacca tcaacaggca gaggccgagg ccgaggacat
      421 atgagtgatt ttggaagcat tcatagacct ggaattgttg ttgactatca aaacaaaccc
      481 accaatgtga cagttactgc tgcaagagga ataaagagaa aaatgatgca accatttaat
      541 aagcctggtg gaacctttat caagaaaccc aagctagcaa aacctgtgga gaagatgagc
      601 ctcagcaaat cacccacaaa aacagatcct aaaaatgaag aagaagaaaa gcgacgaatt
      661 gaggctcggc gagagaaaca aaggcgcaga agagaaaaaa acagtgagaa atatggagat
      721 ggatacagaa tggcattcac atgttcattt tgtaaatttc gaacgtttga agaaaaagat
      781 attgaactac atctggaaag ttcttcacac caggaaacat tagatcatat tcaaaaacaa
      841 accaaattcg ataaagtagt tatggaattt ttgcatgaat gtatggtaaa taaattcaag
      901 aaaacatcta ttcgtaagca acagacaaat aatcaaacag aagtagtcaa aataattgaa
      961 aaggatgtta tggaaggtgt tactgcagat gatcacatga tgaaagtaga gactgttcac
     1021 tgcagtgctt gcagtgtgta tatccctgct ttacatagct cagttcagca gcacttaaaa
     1081 tctcctgatc atatcaaagg gaagcaggct tataaggaac aaataaaaag agagagtgtc
     1141 ttgactgcta caagcatttt aaataatcca atagtgaagg cgcgatatga acgttttatt
     1201 aagggtgaga atccctttga aattcaagat cattctcaag atcagcaaat agaaggagat
     1261 gaggaggagg aggaaaagat tgatgaacct attgaagaag aggaagagga agaggaggaa
     1321 gaagaagagg aagtggggga agtagaggaa gtagaagaag tggaggaagt agaggaagtg
     1381 ggagacggtg gaggagtaga aggagtgggg gacacagagg aaggagggga cgtagaggga
     1441 gagggggaag taggggcagt ggaggaagga gagggagaag tagagggagt aggggaagta
     1501 gaggaagaag aagcaaagga agagcctgtc agcttccccg ttgaccaacc agaagaaaat
     1561 taaatataag gtattagtca gttttaaaag aagctttaaa tttctgtccc aatgaggaaa
     1621 agggtaagaa tatcagtagt ttaaaatgag agttaatacc catgttgcat gcattccaca
     1681 gattacaatt cgttttatat aatttctaaa tgtttggcat ttgtttaata aaatgaaggt
     1741 aagactattt tagtttagtt tttatagcta cctaacatag attcaataaa ttgtttgtat
     1801 aatttttaag cttaattttt attactttat tggtgttgag gataacagat gtgtattgtt
     1861 agtgtatctg ttctaatcat ttgaacttaa atgctgctct tgggagtgta tattcaagta
     1921 tgcattaatg ttttgaatac ttaccctaga agagataaat tgggcaagta ttttgtgctc
     1981 tgtgtatttt tttactgcat tggacattga atatagtaat ttgcgttaag atacgcttga
     2041 agcctttttg tgaccatgtt tccctttgta gcaataaaat gttttttaca aaaactctct
     2101 ccctggatta gcaatttaaa atgaaacaga attcatcaat taaatgaata tataaaatca
     2161 ggatttgcct taatgtatga gttcagctta taagtgtttt aagataattg gaagacttga
     2221 attaaaaaaa tgtacttcac ttttttttaa gtatgattaa aatattttaa aacat
//
LOCUS       XM_032648169            2205 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 326 (ZNF326),
            transcript variant X4, mRNA.
ACCESSION   XM_032648169
VERSION     XM_032648169.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2205
                     /gene="ZNF326"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761834"
     CDS             350..1492
                     /gene="ZNF326"
                     /codon_start=1
                     /product="DBIRD complex subunit ZNF326 isoform X3"
                     /protein_id="XP_032504060.1"
                     /db_xref="GeneID:116761834"
                     /translation="MSDFGSIHRPGIVVDYQNKPTNVTVTAARGIKRKMMQPFNKPGG
                     TFIKKPKLAKPVEKMSLSKSPTKTDPKNEEEEKRRIEARREKQRRRREKNSEKYGDGY
                     RMAFTCSFCKFRTFEEKDIELHLESSSHQETLDHIQKQTKFDKVVMEFLHECMVNKFK
                     KTSIRKQQTNNQTEVVKIIEKDVMEGVTADDHMMKVETVHCSACSVYIPALHSSVQQH
                     LKSPDHIKGKQAYKEQIKRESVLTATSILNNPIVKARYERFIKGENPFEIQDHSQDQQ
                     IEGDEEEEEKIDEPIEEEEEEEEEEEEEVGEVEEVEEVEEVEEVGDGGGVEGVGDTEE
                     GGDVEGEGEVGAVEEGEGEVEGVGEVEEEEAKEEPVSFPVDQPEEN"
     misc_feature    740..1147
                     /gene="ZNF326"
                     /note="A-kinase anchoring protein 95 (AKAP95); Region:
                     AKAP95; pfam04988"
                     /db_xref="CDD:461509"
ORIGIN      
        1 gtggcctgcg gctcccgggc cgggagcgcc gctcttggtc gcgtttactg gctgtgtgaa
       61 accgcgggtc acgggtgctc gccttccgcc acagctcagc ccagcgccgc cgaggccgtc
      121 ggccccgagc ctccgccatg gacttcgagg acgattacac tcactctgct tgcagaaata
      181 cttatcagag ctttaatgga atggatcgtg attatggccc cggatcttat ggagggatgg
      241 atcgtgacta tggccatgga tcctgtgggg gtcaaagatc catggactcc tacctaaacc
      301 agtcatatgg catggacagt cacagtggtg gtggtggggg tagcagcata tgagtgattt
      361 tggaagcatt catagacctg gaattgttgt tgactatcaa aacaaaccca ccaatgtgac
      421 agttactgct gcaagaggaa taaagagaaa aatgatgcaa ccatttaata agcctggtgg
      481 aacctttatc aagaaaccca agctagcaaa acctgtggag aagatgagcc tcagcaaatc
      541 acccacaaaa acagatccta aaaatgaaga agaagaaaag cgacgaattg aggctcggcg
      601 agagaaacaa aggcgcagaa gagaaaaaaa cagtgagaaa tatggagatg gatacagaat
      661 ggcattcaca tgttcatttt gtaaatttcg aacgtttgaa gaaaaagata ttgaactaca
      721 tctggaaagt tcttcacacc aggaaacatt agatcatatt caaaaacaaa ccaaattcga
      781 taaagtagtt atggaatttt tgcatgaatg tatggtaaat aaattcaaga aaacatctat
      841 tcgtaagcaa cagacaaata atcaaacaga agtagtcaaa ataattgaaa aggatgttat
      901 ggaaggtgtt actgcagatg atcacatgat gaaagtagag actgttcact gcagtgcttg
      961 cagtgtgtat atccctgctt tacatagctc agttcagcag cacttaaaat ctcctgatca
     1021 tatcaaaggg aagcaggctt ataaggaaca aataaaaaga gagagtgtct tgactgctac
     1081 aagcatttta aataatccaa tagtgaaggc gcgatatgaa cgttttatta agggtgagaa
     1141 tccctttgaa attcaagatc attctcaaga tcagcaaata gaaggagatg aggaggagga
     1201 ggaaaagatt gatgaaccta ttgaagaaga ggaagaggaa gaggaggaag aagaagagga
     1261 agtgggggaa gtagaggaag tagaagaagt ggaggaagta gaggaagtgg gagacggtgg
     1321 aggagtagaa ggagtggggg acacagagga aggaggggac gtagagggag agggggaagt
     1381 aggggcagtg gaggaaggag agggagaagt agagggagta ggggaagtag aggaagaaga
     1441 agcaaaggaa gagcctgtca gcttccccgt tgaccaacca gaagaaaatt aaatataagg
     1501 tattagtcag ttttaaaaga agctttaaat ttctgtccca atgaggaaaa gggtaagaat
     1561 atcagtagtt taaaatgaga gttaataccc atgttgcatg cattccacag attacaattc
     1621 gttttatata atttctaaat gtttggcatt tgtttaataa aatgaaggta agactatttt
     1681 agtttagttt ttatagctac ctaacataga ttcaataaat tgtttgtata atttttaagc
     1741 ttaattttta ttactttatt ggtgttgagg ataacagatg tgtattgtta gtgtatctgt
     1801 tctaatcatt tgaacttaaa tgctgctctt gggagtgtat attcaagtat gcattaatgt
     1861 tttgaatact taccctagaa gagataaatt gggcaagtat tttgtgctct gtgtattttt
     1921 ttactgcatt ggacattgaa tatagtaatt tgcgttaaga tacgcttgaa gcctttttgt
     1981 gaccatgttt ccctttgtag caataaaatg ttttttacaa aaactctctc cctggattag
     2041 caatttaaaa tgaaacagaa ttcatcaatt aaatgaatat ataaaatcag gatttgcctt
     2101 aatgtatgag ttcagcttat aagtgtttta agataattgg aagacttgaa ttaaaaaaat
     2161 gtacttcact tttttttaag tatgattaaa atattttaaa acatg
//
LOCUS       XM_032648178            2147 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 326 (ZNF326),
            transcript variant X5, mRNA.
ACCESSION   XM_032648178
VERSION     XM_032648178.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2147
                     /gene="ZNF326"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761834"
     CDS             292..1434
                     /gene="ZNF326"
                     /codon_start=1
                     /product="DBIRD complex subunit ZNF326 isoform X3"
                     /protein_id="XP_032504069.1"
                     /db_xref="GeneID:116761834"
                     /translation="MSDFGSIHRPGIVVDYQNKPTNVTVTAARGIKRKMMQPFNKPGG
                     TFIKKPKLAKPVEKMSLSKSPTKTDPKNEEEEKRRIEARREKQRRRREKNSEKYGDGY
                     RMAFTCSFCKFRTFEEKDIELHLESSSHQETLDHIQKQTKFDKVVMEFLHECMVNKFK
                     KTSIRKQQTNNQTEVVKIIEKDVMEGVTADDHMMKVETVHCSACSVYIPALHSSVQQH
                     LKSPDHIKGKQAYKEQIKRESVLTATSILNNPIVKARYERFIKGENPFEIQDHSQDQQ
                     IEGDEEEEEKIDEPIEEEEEEEEEEEEEVGEVEEVEEVEEVEEVGDGGGVEGVGDTEE
                     GGDVEGEGEVGAVEEGEGEVEGVGEVEEEEAKEEPVSFPVDQPEEN"
     misc_feature    682..1089
                     /gene="ZNF326"
                     /note="A-kinase anchoring protein 95 (AKAP95); Region:
                     AKAP95; pfam04988"
                     /db_xref="CDD:461509"
ORIGIN      
        1 gtggcctgcg gctcccgggc cgggagcgcc gctcttggtc gcgtttactg gctgtgtgaa
       61 accgcgggtc acgggtgctc gccttccgcc acagctcagc ccagcgccgc cgaggccgtc
      121 ggccccgagc ctccgccatg gacttcgagg acgattacac tcactctgct tgcagaaata
      181 cttatcagag ctttaatgga atggatcgtg attatggccc cggatcttat ggaggtctga
      241 cattcaagga tatttatcta aaaattcttc ttttgagtgc cagtaaagca tatgagtgat
      301 tttggaagca ttcatagacc tggaattgtt gttgactatc aaaacaaacc caccaatgtg
      361 acagttactg ctgcaagagg aataaagaga aaaatgatgc aaccatttaa taagcctggt
      421 ggaaccttta tcaagaaacc caagctagca aaacctgtgg agaagatgag cctcagcaaa
      481 tcacccacaa aaacagatcc taaaaatgaa gaagaagaaa agcgacgaat tgaggctcgg
      541 cgagagaaac aaaggcgcag aagagaaaaa aacagtgaga aatatggaga tggatacaga
      601 atggcattca catgttcatt ttgtaaattt cgaacgtttg aagaaaaaga tattgaacta
      661 catctggaaa gttcttcaca ccaggaaaca ttagatcata ttcaaaaaca aaccaaattc
      721 gataaagtag ttatggaatt tttgcatgaa tgtatggtaa ataaattcaa gaaaacatct
      781 attcgtaagc aacagacaaa taatcaaaca gaagtagtca aaataattga aaaggatgtt
      841 atggaaggtg ttactgcaga tgatcacatg atgaaagtag agactgttca ctgcagtgct
      901 tgcagtgtgt atatccctgc tttacatagc tcagttcagc agcacttaaa atctcctgat
      961 catatcaaag ggaagcaggc ttataaggaa caaataaaaa gagagagtgt cttgactgct
     1021 acaagcattt taaataatcc aatagtgaag gcgcgatatg aacgttttat taagggtgag
     1081 aatccctttg aaattcaaga tcattctcaa gatcagcaaa tagaaggaga tgaggaggag
     1141 gaggaaaaga ttgatgaacc tattgaagaa gaggaagagg aagaggagga agaagaagag
     1201 gaagtggggg aagtagagga agtagaagaa gtggaggaag tagaggaagt gggagacggt
     1261 ggaggagtag aaggagtggg ggacacagag gaaggagggg acgtagaggg agagggggaa
     1321 gtaggggcag tggaggaagg agagggagaa gtagagggag taggggaagt agaggaagaa
     1381 gaagcaaagg aagagcctgt cagcttcccc gttgaccaac cagaagaaaa ttaaatataa
     1441 ggtattagtc agttttaaaa gaagctttaa atttctgtcc caatgaggaa aagggtaaga
     1501 atatcagtag tttaaaatga gagttaatac ccatgttgca tgcattccac agattacaat
     1561 tcgttttata taatttctaa atgtttggca tttgtttaat aaaatgaagg taagactatt
     1621 ttagtttagt ttttatagct acctaacata gattcaataa attgtttgta taatttttaa
     1681 gcttaatttt tattacttta ttggtgttga ggataacaga tgtgtattgt tagtgtatct
     1741 gttctaatca tttgaactta aatgctgctc ttgggagtgt atattcaagt atgcattaat
     1801 gttttgaata cttaccctag aagagataaa ttgggcaagt attttgtgct ctgtgtattt
     1861 ttttactgca ttggacattg aatatagtaa tttgcgttaa gatacgcttg aagccttttt
     1921 gtgaccatgt ttccctttgt agcaataaaa tgttttttac aaaaactctc tccctggatt
     1981 agcaatttaa aatgaaacag aattcatcaa ttaaatgaat atataaaatc aggatttgcc
     2041 ttaatgtatg agttcagctt ataagtgttt taagataatt ggaagacttg aattaaaaaa
     2101 atgtacttca ctttttttta agtatgatta aaatatttta aaacatg
//
LOCUS       XM_032648191            2367 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus syntaxin 12 (STX12), transcript variant
            X1, mRNA.
ACCESSION   XM_032648191
VERSION     XM_032648191.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2367
                     /gene="STX12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 20 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761850"
     CDS             126..950
                     /gene="STX12"
                     /codon_start=1
                     /product="syntaxin-12 isoform X1"
                     /protein_id="XP_032504082.1"
                     /db_xref="GeneID:116761850"
                     /translation="MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIK
                     NLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQKLQ
                     KERLMNDFSAALNNFQAVQRRVSEKEKESIARARAGSRLSVEERQREEQLVSFDSHEE
                     WNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDS
                     IEANVESSEVHVERATDQLQRAAYYQKKSRKKICILVLVLSVIIVILGLILWLVNK"
     misc_feature    213..521
                     /gene="STX12"
                     /note="Syntaxin-like protein; Region: Syntaxin_2;
                     pfam14523"
                     /db_xref="CDD:464199"
     misc_feature    666..866
                     /gene="STX12"
                     /note="SNARE motif of syntaxin 12; Region:
                     SNARE_syntaxin12; cd15876"
                     /db_xref="CDD:277229"
     misc_feature    order(669..671,675..680,684..701,705..713,717..722,
                     726..734,738..743,747..755,759..764,768..785,789..806,
                     810..827,831..839)
                     /gene="STX12"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277229"
     misc_feature    759..761
                     /gene="STX12"
                     /note="zero layer; other site"
                     /db_xref="CDD:277229"
ORIGIN      
        1 tcacgcagct ttatcccctt ccccgccctt tctcttcccg gtttccctgt aagcctgctg
       61 gtcgggtctg gcggctgctt ccggtaggag cgcggtgcag ggcgagtcgg tctcggctcc
      121 tcgtcatgtc ctacggtccc ttagatatgt accggaaccc gggggcctcg gggcccccgc
      181 tccgggactt caacagcatc atccagacgt gcagcggcaa catccagcgg atcagccaag
      241 ccactgctca gataaagaat ttgatgagcc aactaggaac taagcaagat tcaagcaagc
      301 tacaggaaaa tctgcaacag ttacagcact ctacaaatca gcttgccaag gaaacaaatg
      361 aattactgaa ggaattaggg tccttgcccc ttcctttatc tacttcagaa cagcgccagc
      421 agaaacttca gaaggaacgt ctcatgaatg acttctctgc agccttaaac aacttccagg
      481 ctgtgcagag aagggtatct gaaaaggaaa aggagagtat tgccagagca agagctggat
      541 ctcgtctttc tgtggaggag aggcaaagag aggagcagct cgtctcattt gacagccatg
      601 aggagtggaa ccagatgcag agccaggagg atgaggtggc catcactgaa caggatttgg
      661 aacttattaa agagagggaa acggcaattc ggcagctgga ggctgatatt ttggatgtca
      721 atcagatatt taaagatttg gcaatgatga tccatgacca aggtgatctc attgacagca
      781 tagaagccaa tgtggaaagc tcagaggtgc atgtagaaag agccactgat cagttacagc
      841 gagctgctta ctatcagaaa aaatctcgca agaagatctg tatcctggtg cttgtcctgt
      901 cagtgattat tgtaatcttg ggacttattt tgtggctagt taataaatga agtgattgcc
      961 tccgagcctt ctcctgctga gctgttttca agggcaagtg cttgctggag tcttgccaga
     1021 acaaactgat cacaagaaga cagaatacac cagaatgtcc tgtaataatt tagttagaaa
     1081 ctaactacta actagtcctt ggaattagtg acctgtggag acagtattta tcaacttatg
     1141 tatacatttt attgatttct caaattaaga attaatttat gtggattttg ctttctctta
     1201 tactctgatt gcccttcgtc ccaagtgttt actgaaaatt acattctaga tattcttgtt
     1261 ttggtaggta acactatagt cttgtaatat tgtctatgta catacaagat ttaccttttt
     1321 actagcaact gagatagaat tactttctgt cacccagcgt attggagtct gtcagaaact
     1381 gtataataag ccagcatttt ttattattta atatttgttt gaatttctag aagcctgccc
     1441 cctatatgct ttgaaaggtt ttggcaatgt atttaactag agaataaaaa attgcacaga
     1501 tccagattaa atgagaagta actatttgag ctggccagct gttggggtgt gtgttaatct
     1561 gggtttaagt ttattatctg ctagtgtcat cgactgcaat tcatccatat atacactaaa
     1621 tgatcttgtt cactttttga agagtttaat taacattatg attctctgtg gggttcctct
     1681 cccacctgtc tgtatagaag gggagaatta gacaaagcgt tcttctggag agcaaatagg
     1741 aattgtttgg aatgatttaa tcttttgttg ttgttgctca gttgtggttc tgcactcctg
     1801 gtaaatgatg aatgttgcca tcaaaaggct gccccatacc ctaataaggt ttgctgggca
     1861 tttgatggca ggaagatttt aaaagctaga ctgaagttgg tttaaaattt agtcctgtga
     1921 acctggcgat aaagcaaagg ttcttttttg taaataatac tggtttggaa tagtgatgtt
     1981 agacttatcc taatttatga acaagagatt aatctctcca tgcatagttt tagacaaaaa
     2041 atgtttcaat aaaagattgc tgtcttgtaa cataaatgtt gtccactccc ctttttcaca
     2101 agtgtaggga agttaaaagg aaagtaattt ctctaggctc tcacataaat gtgaattggg
     2161 ccaacgattt cagttcatcc tttagtgaat cagaggatct cactaccctg gatatattta
     2221 tacttatttc ttccattccc tttaatgtta cttaatcttc ttttactaaa ctaatgtgaa
     2281 cagcagggaa acagggctaa atgcataagt ttctttgcac tcttgcagcg ttccacccac
     2341 ataaggcaaa taaacatttg aaaagct
//
LOCUS       XM_032648201            2355 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus syntaxin 12 (STX12), transcript variant
            X2, mRNA.
ACCESSION   XM_032648201
VERSION     XM_032648201.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2355
                     /gene="STX12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761850"
     CDS             126..938
                     /gene="STX12"
                     /codon_start=1
                     /product="syntaxin-12 isoform X2"
                     /protein_id="XP_032504092.1"
                     /db_xref="GeneID:116761850"
                     /translation="MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIK
                     NLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQKLQ
                     KERLMNDFSAALNNFQAVQRRVSEKEKESIARARAGSRLSVEERQREEQLVSFDSHEE
                     WNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQDSIEAN
                     VESSEVHVERATDQLQRAAYYQKKSRKKICILVLVLSVIIVILGLILWLVNK"
     misc_feature    213..521
                     /gene="STX12"
                     /note="Syntaxin-like protein; Region: Syntaxin_2;
                     pfam14523"
                     /db_xref="CDD:464199"
     misc_feature    666..854
                     /gene="STX12"
                     /note="SNARE motif of syntaxin 12; Region:
                     SNARE_syntaxin12; cd15876"
                     /db_xref="CDD:277229"
     misc_feature    order(669..671,675..680,684..701,705..713,717..722,
                     726..734,738..743,747..755,759..761,762..773,777..794,
                     798..815,819..827)
                     /gene="STX12"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277229"
     misc_feature    759..761
                     /gene="STX12"
                     /note="zero layer; other site"
                     /db_xref="CDD:277229"
ORIGIN      
        1 tcacgcagct ttatcccctt ccccgccctt tctcttcccg gtttccctgt aagcctgctg
       61 gtcgggtctg gcggctgctt ccggtaggag cgcggtgcag ggcgagtcgg tctcggctcc
      121 tcgtcatgtc ctacggtccc ttagatatgt accggaaccc gggggcctcg gggcccccgc
      181 tccgggactt caacagcatc atccagacgt gcagcggcaa catccagcgg atcagccaag
      241 ccactgctca gataaagaat ttgatgagcc aactaggaac taagcaagat tcaagcaagc
      301 tacaggaaaa tctgcaacag ttacagcact ctacaaatca gcttgccaag gaaacaaatg
      361 aattactgaa ggaattaggg tccttgcccc ttcctttatc tacttcagaa cagcgccagc
      421 agaaacttca gaaggaacgt ctcatgaatg acttctctgc agccttaaac aacttccagg
      481 ctgtgcagag aagggtatct gaaaaggaaa aggagagtat tgccagagca agagctggat
      541 ctcgtctttc tgtggaggag aggcaaagag aggagcagct cgtctcattt gacagccatg
      601 aggagtggaa ccagatgcag agccaggagg atgaggtggc catcactgaa caggatttgg
      661 aacttattaa agagagggaa acggcaattc ggcagctgga ggctgatatt ttggatgtca
      721 atcagatatt taaagatttg gcaatgatga tccatgacca agacagcata gaagccaatg
      781 tggaaagctc agaggtgcat gtagaaagag ccactgatca gttacagcga gctgcttact
      841 atcagaaaaa atctcgcaag aagatctgta tcctggtgct tgtcctgtca gtgattattg
      901 taatcttggg acttattttg tggctagtta ataaatgaag tgattgcctc cgagccttct
      961 cctgctgagc tgttttcaag ggcaagtgct tgctggagtc ttgccagaac aaactgatca
     1021 caagaagaca gaatacacca gaatgtcctg taataattta gttagaaact aactactaac
     1081 tagtccttgg aattagtgac ctgtggagac agtatttatc aacttatgta tacattttat
     1141 tgatttctca aattaagaat taatttatgt ggattttgct ttctcttata ctctgattgc
     1201 ccttcgtccc aagtgtttac tgaaaattac attctagata ttcttgtttt ggtaggtaac
     1261 actatagtct tgtaatattg tctatgtaca tacaagattt acctttttac tagcaactga
     1321 gatagaatta ctttctgtca cccagcgtat tggagtctgt cagaaactgt ataataagcc
     1381 agcatttttt attatttaat atttgtttga atttctagaa gcctgccccc tatatgcttt
     1441 gaaaggtttt ggcaatgtat ttaactagag aataaaaaat tgcacagatc cagattaaat
     1501 gagaagtaac tatttgagct ggccagctgt tggggtgtgt gttaatctgg gtttaagttt
     1561 attatctgct agtgtcatcg actgcaattc atccatatat acactaaatg atcttgttca
     1621 ctttttgaag agtttaatta acattatgat tctctgtggg gttcctctcc cacctgtctg
     1681 tatagaaggg gagaattaga caaagcgttc ttctggagag caaataggaa ttgtttggaa
     1741 tgatttaatc ttttgttgtt gttgctcagt tgtggttctg cactcctggt aaatgatgaa
     1801 tgttgccatc aaaaggctgc cccataccct aataaggttt gctgggcatt tgatggcagg
     1861 aagattttaa aagctagact gaagttggtt taaaatttag tcctgtgaac ctggcgataa
     1921 agcaaaggtt cttttttgta aataatactg gtttggaata gtgatgttag acttatccta
     1981 atttatgaac aagagattaa tctctccatg catagtttta gacaaaaaat gtttcaataa
     2041 aagattgctg tcttgtaaca taaatgttgt ccactcccct ttttcacaag tgtagggaag
     2101 ttaaaaggaa agtaatttct ctaggctctc acataaatgt gaattgggcc aacgatttca
     2161 gttcatcctt tagtgaatca gaggatctca ctaccctgga tatatttata cttatttctt
     2221 ccattccctt taatgttact taatcttctt ttactaaact aatgtgaaca gcagggaaac
     2281 agggctaaat gcataagttt ctttgcactc ttgcagcgtt ccacccacat aaggcaaata
     2341 aacatttgaa aagct
//
LOCUS       XM_032648211            2454 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DMRT like family A2 (DMRTA2), transcript
            variant X1, mRNA.
ACCESSION   XM_032648211
VERSION     XM_032648211.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2454
                     /gene="DMRTA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 22 Proteins, and 60%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761858"
     CDS             338..1945
                     /gene="DMRTA2"
                     /codon_start=1
                     /product="doublesex- and mab-3-related transcription
                     factor A2"
                     /protein_id="XP_032504102.1"
                     /db_xref="GeneID:116761858"
                     /translation="MELRSELPSVPGAATAAATTTGPPVASVASVAAAAAAAASLPVS
                     VAGGLLRAPPLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIA
                     ERQRVMAAQVALRRQQAQEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVC
                     AADGGGPGAGAPAGTGGGAAGAGSSEAKLQKFDVFPKTLLQAGRAGSPQPPPGKPLSP
                     DGADSGPGTSSPEVRAGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGAEEDS
                     PGSASPLGSESGSEVDKEEAEAAPAPGLGGGPGPRQRTPLDILTRVFPGHRRGVLELV
                     LQGCGGDVVQAIEQVLNHHRGGLAAGLGPAVPPDKAAVGAVVAADDAWPGRVDAAAAG
                     GPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYP
                     LGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSA
                     AAAAVHKEPTYGGGLYGPMVNGAPEKQ"
     misc_feature    530..670
                     /gene="DMRTA2"
                     /note="DM DNA binding domain; Region: DM; pfam00751"
                     /db_xref="CDD:459924"
     misc_feature    1268..1393
                     /gene="DMRTA2"
                     /note="CUE-like DMA domain found in doublesex- and
                     mab-3-related transcription factor A2 (DMRTA2); Region:
                     CUE_DMA_DMRTA2; cd14418"
                     /db_xref="CDD:270601"
     misc_feature    1619..1858
                     /gene="DMRTA2"
                     /note="DMRT5, DMB domain; Region: DMRT5_DMB; pfam20624"
                     /db_xref="CDD:466773"
ORIGIN      
        1 ttgagagtct ggcagcgccg ggcagctggg gccagactgt gtgcagcgtc cagcgcgctc
       61 cgcgagggga cgcggcgcgg caagggccgg gtcgtgggtt ccagccagtc gatccctaaa
      121 cggttgcccg gctccgattt ccgacggaag ggttggactg cgcagcgttc tgagggggtc
      181 cggaagttcg gacatggtga ctgaaggagg gtgacgtggt cagataaggg gccgggggca
      241 aggggaagag gctgagagcg ccagcgtcgc gagcggagct gggaggcgcg tgcagcgccc
      301 gcggaggagg atccccgagc ctaaggcagg tcctgccatg gagctgcgct ccgagttgcc
      361 cagcgtaccc ggcgcggcga cggcggctgc gacaacgacg ggcccgcccg tggcttcggt
      421 ggcgtcggtg gcagcggcgg cggcagcggc cgcttcgcta cctgtgagcg tggcgggcgg
      481 cttgttacga gcgccgccgc tgttgttgcg ggctgcggag aagtacccgc ggacccccaa
      541 gtgcgcgcgc tgccgcaacc acggcgtggt gtctgcgctc aagggccaca agcgctactg
      601 ccgctggaag gactgcctgt gcgccaagtg cacgctcatc gccgagcgcc agcgcgtcat
      661 ggcggcgcag gtggcgctgc gcaggcaaca ggcgcaggaa gagaacgagg cgcgcgagtt
      721 acagctcctc tacggcactg ccgagggcct ggcgctggcc gccgccaacg gcatcatccc
      781 gccgcgaccc gcctacgagg tcttcggctc tgtgtgcgcc gccgacggcg gggggccggg
      841 agcgggagcg cccgcgggca ccggaggcgg cgccgcgggc gcggggagct cagaggccaa
      901 gttacagaag tttgacgtat tccccaagac gctgcttcag gcaggccgcg caggcagccc
      961 gcagccgccg ccgggaaagc ccttatcacc cgacggcgcg gactctggtc ccgggacatc
     1021 gtccccagag gtgcgagcgg gctcgggctc ggagaacggc gacggcgagt ccttttctgg
     1081 gtcgcccctg gcccgggcct ccaaagaggc aggtggcagc tgcccaggca gcgctggccc
     1141 cggaggcggc gccgaggagg acagcccggg atccgccagc cctctgggtt cagaatccgg
     1201 ttccgaggtc gacaaagaag aggcagaggc cgctcccgcg cccgggctgg gcgggggccc
     1261 gggtccacgg cagcggacgc cgctagacat cttgacgcgt gtcttcccgg gccaccggcg
     1321 gggtgtcctg gagctagtgt tgcagggctg cggcggcgac gtggtgcagg ctatcgagca
     1381 agtgctgaac caccaccgcg ggggcctggc ggccggcctc ggccccgccg tgccccccga
     1441 taaggccgcg gtgggggcag tagtagcagc ggatgacgcg tggcctggcc gcgtcgacgc
     1501 cgcggccgcc ggggggccgg ggctgcccgc gccgcttcag gcgggcccag ccgcacctcc
     1561 acaccacaga cctttgctgg ccggcgccat ggcgcccggg gcgctgggct cgctgagcag
     1621 ccgctcggcc ttctcgccac tgcagcccaa cgccagtcac ttcggcgccg acgcgggcgc
     1681 ctacccgctg ggcgcgccgc tcggcctcag ccccctgcgc ctggcctact cggcggcggc
     1741 ggcgcacagt cgcggcctgg ccttcatggc tccctactct accgccggcc tggtgcccac
     1801 actcggcttc cgcccgccca tggactacgc cttcagtgat ctcatgcgcg accgctcggc
     1861 cgccgccgct gctgtgcaca aggagccgac ctacggcggc ggcctgtacg ggcccatggt
     1921 caatggtgcc cctgagaagc agtagggcga gcggcccggc agtcgggcgg cccccaaaca
     1981 gggaccctag gcttgccccg cgggctgccg gcccgtcttt gcctggtgcg ctctctgcgc
     2041 cccggctggg atcctctcgc tccaaggtgg ttttcagttt tgttttggac ggtgggtggg
     2101 gagagctgag caaagaggag cagcttcaga tgcagatgtt ctcggagggg atgtgagacc
     2161 cccatcctcg tcccgcgacc ctatcaaggc tccccatccc ttcagaaggc cgggaattct
     2221 tgagaattca gaggctgcag tcgctgcgca agctcctgcc tctcctgtcg ctatgctcgt
     2281 cacacctgcc cgcgctccca aatggttggc aggatagtcc gagagtctgt cttctgtgtc
     2341 tccccctccc ttaaaaaatt ttttaatatt cgctctaaca aatataaatt taggatgtat
     2401 aaatctcttg gcactgagtc gagtctttgg gacacacata tatatcgata tcaa
//
LOCUS       XM_032648219            3054 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DMRT like family A2 (DMRTA2), transcript
            variant X2, mRNA.
ACCESSION   XM_032648219
VERSION     XM_032648219.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3054
                     /gene="DMRTA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 22 Proteins, and 50%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761858"
     CDS             335..1942
                     /gene="DMRTA2"
                     /codon_start=1
                     /product="doublesex- and mab-3-related transcription
                     factor A2"
                     /protein_id="XP_032504110.1"
                     /db_xref="GeneID:116761858"
                     /translation="MELRSELPSVPGAATAAATTTGPPVASVASVAAAAAAAASLPVS
                     VAGGLLRAPPLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIA
                     ERQRVMAAQVALRRQQAQEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVC
                     AADGGGPGAGAPAGTGGGAAGAGSSEAKLQKFDVFPKTLLQAGRAGSPQPPPGKPLSP
                     DGADSGPGTSSPEVRAGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGAEEDS
                     PGSASPLGSESGSEVDKEEAEAAPAPGLGGGPGPRQRTPLDILTRVFPGHRRGVLELV
                     LQGCGGDVVQAIEQVLNHHRGGLAAGLGPAVPPDKAAVGAVVAADDAWPGRVDAAAAG
                     GPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYP
                     LGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSA
                     AAAAVHKEPTYGGGLYGPMVNGAPEKQ"
     misc_feature    527..667
                     /gene="DMRTA2"
                     /note="DM DNA binding domain; Region: DM; pfam00751"
                     /db_xref="CDD:459924"
     misc_feature    1265..1390
                     /gene="DMRTA2"
                     /note="CUE-like DMA domain found in doublesex- and
                     mab-3-related transcription factor A2 (DMRTA2); Region:
                     CUE_DMA_DMRTA2; cd14418"
                     /db_xref="CDD:270601"
     misc_feature    1616..1855
                     /gene="DMRTA2"
                     /note="DMRT5, DMB domain; Region: DMRT5_DMB; pfam20624"
                     /db_xref="CDD:466773"
ORIGIN      
        1 attgagagtc tggcagcgcc gggcagctgg ggccagactg tgtgcagcgt ccagcgcgct
       61 ccgcgagggg acgcggcgcg gcaagggccg ggtcgtgggt tccagccagt cgatccctaa
      121 acggttgccc ggctccgatt tccgacggaa gggttggact gcgcagcgtt ctgagggggt
      181 ccggaagttc ggacatggtg actgaaggag ggtgacgtgg tcagataagg ggccgggggc
      241 aaggggaaga ggctgagagc gccagcgtcg cgagcggagc tgggaggcgc gtgcagcgcc
      301 cgcggaggag gatccccgag cctaaggtcc tgccatggag ctgcgctccg agttgcccag
      361 cgtacccggc gcggcgacgg cggctgcgac aacgacgggc ccgcccgtgg cttcggtggc
      421 gtcggtggca gcggcggcgg cagcggccgc ttcgctacct gtgagcgtgg cgggcggctt
      481 gttacgagcg ccgccgctgt tgttgcgggc tgcggagaag tacccgcgga cccccaagtg
      541 cgcgcgctgc cgcaaccacg gcgtggtgtc tgcgctcaag ggccacaagc gctactgccg
      601 ctggaaggac tgcctgtgcg ccaagtgcac gctcatcgcc gagcgccagc gcgtcatggc
      661 ggcgcaggtg gcgctgcgca ggcaacaggc gcaggaagag aacgaggcgc gcgagttaca
      721 gctcctctac ggcactgccg agggcctggc gctggccgcc gccaacggca tcatcccgcc
      781 gcgacccgcc tacgaggtct tcggctctgt gtgcgccgcc gacggcgggg ggccgggagc
      841 gggagcgccc gcgggcaccg gaggcggcgc cgcgggcgcg gggagctcag aggccaagtt
      901 acagaagttt gacgtattcc ccaagacgct gcttcaggca ggccgcgcag gcagcccgca
      961 gccgccgccg ggaaagccct tatcacccga cggcgcggac tctggtcccg ggacatcgtc
     1021 cccagaggtg cgagcgggct cgggctcgga gaacggcgac ggcgagtcct tttctgggtc
     1081 gcccctggcc cgggcctcca aagaggcagg tggcagctgc ccaggcagcg ctggccccgg
     1141 aggcggcgcc gaggaggaca gcccgggatc cgccagccct ctgggttcag aatccggttc
     1201 cgaggtcgac aaagaagagg cagaggccgc tcccgcgccc gggctgggcg ggggcccggg
     1261 tccacggcag cggacgccgc tagacatctt gacgcgtgtc ttcccgggcc accggcgggg
     1321 tgtcctggag ctagtgttgc agggctgcgg cggcgacgtg gtgcaggcta tcgagcaagt
     1381 gctgaaccac caccgcgggg gcctggcggc cggcctcggc cccgccgtgc cccccgataa
     1441 ggccgcggtg ggggcagtag tagcagcgga tgacgcgtgg cctggccgcg tcgacgccgc
     1501 ggccgccggg gggccggggc tgcccgcgcc gcttcaggcg ggcccagccg cacctccaca
     1561 ccacagacct ttgctggccg gcgccatggc gcccggggcg ctgggctcgc tgagcagccg
     1621 ctcggccttc tcgccactgc agcccaacgc cagtcacttc ggcgccgacg cgggcgccta
     1681 cccgctgggc gcgccgctcg gcctcagccc cctgcgcctg gcctactcgg cggcggcggc
     1741 gcacagtcgc ggcctggcct tcatggctcc ctactctacc gccggcctgg tgcccacact
     1801 cggcttccgc ccgcccatgg actacgcctt cagtgatctc atgcgcgacc gctcggccgc
     1861 cgccgctgct gtgcacaagg agccgaccta cggcggcggc ctgtacgggc ccatggtcaa
     1921 tggtgcccct gagaagcagt agggcgagcg gcccggcagt cgggcggccc ccaaacaggg
     1981 accctaggct tgccccgcgg gctgccggcc cgtctttgcc tggtgcgctc tctgcgcccc
     2041 ggctgggatc ctctcgctcc aaggtggttt tcagttttgt tttggacggt gggtggggag
     2101 agctgagcaa agaggagcag cttcagatgc agatgttctc ggaggggatg tgagaccccc
     2161 atcctcgtcc cgcgacccta tcaaggctcc ccatcccttc agaaggccgg gaattcttga
     2221 gaattcagag gctgcagtcg ctgcgcaagc tcctgcctct cctgtcgcta tgctcgtcac
     2281 acctgcccgc gctcccaaat ggttggcagg atagtccgag agtctgtctt ctgtgtctcc
     2341 ccctccctta aaaaattttt taatattcgc tctaacaaat ataaatttag gatgtataaa
     2401 tctcttggca ctgagtcgag tctttgggac acacatatat atcgatatca aattgtaaaa
     2461 aaagaaaaaa aaggaaacaa gttctaaggt gcactttcct cgttgcggta tttgtcgctc
     2521 tctttgttgc ttatgccgat aagcatgggt ttccttggtg cagtgtgagt ttttatatat
     2581 gtataaatct atatataaac tatacatata tatacaagcc agtgtataat gttataaaat
     2641 ggaattctaa gttattaatc tgtaggtgac ctcggtatta acgtgaaaaa tattcaaaaa
     2701 caagcaaaaa aaaggacaaa acggaaaaaa aattagacta tgcgtgcatt gtacttatca
     2761 ggtttataga ttaaatatat tgtaaactcg agatgaatcc tgcccaccca cccctcttgc
     2821 ctgcggcctg tctctcccta aggagcggtc taggtgcgca ctgaagcagg aacagagtga
     2881 cccgtgactg agccggaacc gcccgccgga gggcccatcc ccgcctcgcg ggactcgcca
     2941 ggcacctcgg ccgaagggcc ggcagcggga aacgctgctg cacagaatgg ctcactttgt
     3001 gctttccttt gcctagacat gagctagaaa taaatgttat tttctaagaa aaca
//
LOCUS       XR_004352141             866 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761865
            (LOC116761865), transcript variant X1, ncRNA.
ACCESSION   XR_004352141
VERSION     XR_004352141.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..866
                     /gene="LOC116761865"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116761865"
     ncRNA           1..866
                     /ncRNA_class="lncRNA"
                     /gene="LOC116761865"
                     /product="uncharacterized LOC116761865, transcript variant
                     X1"
                     /db_xref="GeneID:116761865"
ORIGIN      
        1 tgacaaagcc gggaggggcc tgatgggtgc ctggagagtg aagagatggc tcagtaaagg
       61 cctcagccca cctcttccac gagctcccac tgcactgtca gctctgtgag agctggggcc
      121 ctgctgcttg tcggctgcca cgtcccccgt ggtaaatagt tgacagatgt tgggtggagg
      181 caggtgcgct atgaacagag gcttcaattt tttggtgtta ggaaaataga cataaagccc
      241 aggaagggaa agtcggatgt ggaagaaaag agccgtgaag ggaagtgacg tgagatgctg
      301 tgtgtcggat ctgggatgac gaagggtaaa cctggagcct gcttgccagg aagagaagcg
      361 aggtccttgc gtgagcacac ggtggaaacg agacgtcaag agcagcacga agtagggccc
      421 cagcgagccg tcgtcccacc acgctgcctc acccgaaaca aggctcccac caggaaggcc
      481 agagggaggc accaccctca cccctgactc ccaaagaggt ctcagcagaa gtttagcgag
      541 agtttccatc atcgcacttg cttgagaagt gtgtcagaag aatgcactga ccagctgggg
      601 aagctcctac agcctgggcc ctgggatgag gagttgtggg gtggagccag tggagccaga
      661 gccgacagcc tcccacaggt gatgtgagtg cgaaggagat gtgcgtggtt gtgagccccc
      721 gagacactgg gtttgcttgt taccgcagcc aaaatgacac agtattgaga agaagagggg
      781 ttggaatatt actcagccat aaaaaggaat gaaatcttgc catcggcaac aacacggatg
      841 gacctagagg gtattattcc aagtga
//
LOCUS       XR_004352142             924 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116761865
            (LOC116761865), transcript variant X2, ncRNA.
ACCESSION   XR_004352142
VERSION     XR_004352142.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..924
                     /gene="LOC116761865"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116761865"
     ncRNA           1..924
                     /ncRNA_class="lncRNA"
                     /gene="LOC116761865"
                     /product="uncharacterized LOC116761865, transcript variant
                     X2"
                     /db_xref="GeneID:116761865"
ORIGIN      
        1 tgacaaagcc gggaggggcc tgatgggtgc ctggagagtg aagagatggc tcagtaaagg
       61 cctcagccca cctcttccac gagctcccac tgcactgtca gctctgtgag agctggggcc
      121 ctgctgcttg tcggctgcca cgtcccccgt ggtaaatagt tgacagatgt tgggtggagg
      181 caggtgcgct atgaacagag gcttcaattt tttggtgtta ggaaaataga cataaagccc
      241 aggaagggaa agtcggatgt ggaagaaaag agccgtgaag ggaagtgacg tgagatgctg
      301 tgtgtcggat ctgggatgac gaagggtaaa cctggagcct gcttgccagg aagagaagcg
      361 aggtccttgc gtgagcacac ggtggaaacg agacgtcaag agcagcacga agtagggccc
      421 cagcgagccg tcgtcccacc acgctgcctc acccgaaaca agagctccat aggcaccagc
      481 atttgtgccc agtgaaggac agggtttccc ttccttccag gctcccacca ggaaggccag
      541 agggaggcac caccctcacc cctgactccc aaagaggtct cagcagaagt ttagcgagag
      601 tttccatcat cgcacttgct tgagaagtgt gtcagaagaa tgcactgacc agctggggaa
      661 gctcctacag cctgggccct gggatgagga gttgtggggt ggagccagtg gagccagagc
      721 cgacagcctc ccacaggtga tgtgagtgcg aaggagatgt gcgtggttgt gagcccccga
      781 gacactgggt ttgcttgtta ccgcagccaa aatgacacag tattgagaag aagaggggtt
      841 ggaatattac tcagccataa aaaggaatga aatcttgcca tcggcaacaa cacggatgga
      901 cctagagggt attattccaa gtga
//
LOCUS       XM_032648255            5671 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus odr-4 GPCR localization factor homolog
            (ODR4), transcript variant X1, mRNA.
ACCESSION   XM_032648255
VERSION     XM_032648255.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5671
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5671
                     /gene="ODR4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761873"
     CDS             160..1560
                     /gene="ODR4"
                     /codon_start=1
                     /product="protein odr-4 homolog isoform X1"
                     /protein_id="XP_032504146.1"
                     /db_xref="GeneID:116761873"
                     /translation="MGRTYIVEETVSQYLSNISLQGKAFVSGLLIGQCSSQKDYVILA
                     TRTPPKEEQDESSKHSKAKLDNLDEEWATEHANQVSRMLPGGLLVLGVFIITTLEMGN
                     EFQNTLHRLVFAVEKSMNKKRLWNFTDEEVSERVTLHFCSSTKKIFCRTYDIHNPKSS
                     AKPADWKYQNGLSASWLSLECTVYINIHVPLSTTSVSYTLEKNTKNGLIHWAKQIENS
                     IYLINGQVKDEDCDLLEGQKKSSRGNTQAINHSFDVRVLTQLLLNSDHRSTATVQICS
                     GSVNLKGAVKCRAYIHSNKPKVKDAVQAMKRDILNTVADRCEILFEDLLLNEIPEKKL
                     YKATTCFLTRKDSEKEFHILPHRVFVPIPGSSVMLCDYKFGDESAEEIRDHFIEMLDH
                     MIQIEDLEIAEEINTACVSSSMNTEASLDNTDDEPSKQPIKTTIVLKIQQNIGVIAAF
                     AVAALAAGISFHYFSD"
     misc_feature    241..1362
                     /gene="ODR4"
                     /note="Odorant response abnormal 4-like; Region:
                     ODR4-like; pfam14778"
                     /db_xref="CDD:464311"
ORIGIN      
        1 tgaattcatt gactgtggaa ttgggaccgg tgtggaatct ggttcctgga ggctggtact
       61 tgcactctga acacctttct caggtggtct gacagttcga cagatttgtc tgccacgcgt
      121 gcacagtctg agtgcaggag gttgaattag ttcttaataa tgggaagaac ctacattgta
      181 gaagagactg tcagccagta tctttcaaac atcagtctcc aaggaaaagc ttttgtctct
      241 ggtcttttaa taggacagtg ttcttcacaa aaggattacg tgattcttgc cactagaacg
      301 ccacccaaag aggaacaaga tgagagctcc aaacattcca aagctaagtt ggataacttg
      361 gatgaagaat gggccacaga acatgccaac caggtatcca gaatgctacc agggggactt
      421 ttagttcttg gagtatttat tattacaact ttagaaatgg ggaatgaatt tcaaaatacc
      481 ctacatagac tagtatttgc tgtggaaaaa tctatgaata aaaagagact gtggaatttc
      541 acagacgagg aggtctcaga acgagtgaca cttcactttt gctcttctac aaaaaaaata
      601 ttttgtcgaa cttatgatat ccataatcca aagagttctg caaaaccagc agattggaag
      661 tatcaaaatg gactatcagc ttcatggctt tctttagagt gtacagtata tattaatatt
      721 catgtcccac tgtctactac ttctgtcagc tatactctgg agaaaaatac aaagaatgga
      781 cttatacact gggccaagca aatagaaaat agtatttatt tgattaatgg acaagttaaa
      841 gatgaagatt gtgacctatt agaaggacag aaaaaatctt ctagaggaaa tactcaagca
      901 attaatcatt cttttgatgt cagagtgcta acacagttgc ttctgaattc agaccacaga
      961 tccacagcca cagtccagat ctgcagtggc tctgtaaacc ttaagggtgc tgtgaaatgc
     1021 agagcttata ttcatagcaa taaacccaag gttaaagatg ctgtacaggc catgaaaaga
     1081 gatatattga atacagttgc tgatcgttgt gaaatactat ttgaggatct gcttttgaat
     1141 gaaattccag aaaaaaaatt atataaagct accacttgct tcttgacgag gaaagattct
     1201 gaaaaagagt tccacatcct ccctcaccga gtttttgtcc ccattccggg atcctctgta
     1261 atgttatgtg attataaatt tggtgatgag tcagctgaag aaattagaga ccattttata
     1321 gagatgttag atcatatgat tcaaatagaa gatttggaaa ttgcagagga aataaacaca
     1381 gcctgtgtaa gttcctctat gaatactgaa gcttcattgg acaacacaga tgatgaacca
     1441 tcaaaacagc caattaaaac tacaatagtg ttgaaaattc agcaaaacat aggtgtgatt
     1501 gcagcatttg cagttgcagc ccttgctgcg ggtatctcct ttcattactt cagtgattag
     1561 ggtgaggcac aaagagcttc ctgatcatcc agagaacact gaccaacaat tatgaataat
     1621 aatgatgcaa acaatccatc tgcgtctaag acaatagcag tcagatctgc tgccataatg
     1681 cctattaggt gtgtttctga ctaaaatgaa atcaccagct gccttgttta gccctgctta
     1741 tattataggt ggctcaggct tccaagaata aagttatgaa tctagatgga agttgcatgt
     1801 aacaaatcgt tattatctat tttttaaaat gttcaaaatg atggtttatt ttcataggtt
     1861 ttagtcctgt tgacctgaac cacatattga tcaggacatt ggaaatttga atagtcaggg
     1921 ttgactgaat atattagtaa tagaacaata gaaatttctg caaagtgggg caaaaactta
     1981 ttggataagt tcatagttta ggacctttct atactgattc caaaatactg attgagttcc
     2041 atctgagggg taggaaacct ctccagacct cttgaatcag caaggattgt cataaatcat
     2101 gagctttctc tggttagtat atcataacct aatatattaa ataagacttt tgcttccagt
     2161 aatatattag gtactgcaaa acagctagat cctgaataaa atctcctttt gaatacatta
     2221 ataggctcaa agaaagtagg ggaaatctcc aagaactaca cctctatttt ttctccttga
     2281 caaaatgaac acgttttgat atggaaattg tgaaaactat attaagcata aggttgacag
     2341 tggttgcctg ggtgacaaat accaattgca gcactgccat atgcagtttt ccttagacca
     2401 gaaacaagga gataaatctg aatctgagat gtcccatcca ggacagttga agtgggcctc
     2461 agtttgtaat accctatagt tcctggcaga aacaagatgt aggccccaga ttcccataga
     2521 ttaagataag caatattatt catggctgga gatgaccagg tgcaagttga aactagctag
     2581 cttgagaaag aacctgtaga tataaacttt ggactcaatt ttccaaggtc ttatcatcaa
     2641 catacatgaa ggatggaacc acagactgat ctgaaaaaga aacaagtgga actgcttgat
     2701 gagaaatatg ttacttgcaa tttaaaaaaa gaaaaaccct tagacatgtt gaatatcata
     2761 ttagactcag ctgaagagac aatacataaa ctggaagcta gatataagga aattacccaa
     2821 tgtgcagcca ggagaaacaa ggtgctagaa aatacaaata ttaaggaaaa gataagagat
     2881 atagaaggaa gaattatgaa tactagaatt accagcagaa gagaatagag aggatggagg
     2941 agtggcaata tttgaagaga taacagaatt ttccacattt gttggaaaaa cacgaattca
     3001 taagttcagg aagcacaatg tatcccaagc atatatagat aaaatccaag cctaaaccca
     3061 gtgtagtata actgtgagat accaaacaga ggattcttaa agcaatcaaa gggggaaaaa
     3121 gattatcagt gaaggcaaga cagatacttc agaaagcttc tcaacagcaa caatgtactc
     3181 caaaggtggt agaatagtgc cttcaaaatt ctgagaaaaa cagttgtcaa cttggaatct
     3241 gtatgaagca aaactgaaat aaatatatat tcaagtgaaa aacagatttt accatcagtg
     3301 gaacttcttt aaagaaattg caaaaggatt atcttcaaga aggaaaataa ttccaaaagg
     3361 atctgaaatt gaagaactag taagcaaata aatgaaaaac atgtaaatca aaagtattgt
     3421 ttgtataaaa caatcgtaat gaaagaagtg tttataagaa gcaagagtgt aactaagtaa
     3481 aactaaataa acattttatg caacattaat gtggacttta aaaataggat ataattgaaa
     3541 aactggacag tagcttataa gatggggggt ggttagaatt aaagtgttct gaagtgtttt
     3601 attattcaga aaatgggtta aggtactgtt taactttgaa attatgttaa atatgtgtag
     3661 taaaatttca ggtgtaactg ctaaataata gatatgggat gaatcattcc aaagaaaaaa
     3721 gttaaaaata tggaataaga agacaatacc tcaatacaaa aaaaagggaa agaaattagg
     3781 ggtgggggaa gtacaaaatt agtaagataa atagtaacaa gtcaaataat taaaataact
     3841 atgaataggc taaacccagt taaaaacatt gatttcagtt ttttaaaaat cagctatagg
     3901 ctgatatggg attttttaaa ggataaaaaa atgcactagg caaatagtaa aagaaaactt
     3961 atgtagcttt ggtgctatca actcaaaatt agactttatt atattattat taaagatgga
     4021 gaagaccact aaataatggt aaaaggatca atttattagg aatatataca attttagatt
     4081 tgtatatgct ttataaaatg gcctcaaaat gtataaacta gggctgaacc aacaaattga
     4141 acagcagtgg gtgattttaa cagctctcaa ttactaataa atcaactaga caaaaaaatg
     4201 aatgaaaaca cagttttgaa taatgcaatt aacaatgctg attcgatgaa catatttaga
     4261 ataatcaaca gaatattctt aagcattgtg tattagcaaa aattgaccat gtattaggta
     4321 tgaagtaagt tacaataaat ttcaaaaaat tagtattaaa taataagaaa taacttaggt
     4381 taattttttt taatcatggt tttacaagtt taaaaaaact tcatagatga aaaaaaacca
     4441 taattagtac ctaattataa atactacatt tggaaaaatt gggtgatgca gcagaaagag
     4501 cgcttagagg ggaatggttt taaatgctta aattaaaggc taagtgtata acttaggaaa
     4561 aggacaacag aataaacaca gtatagaagc aaggagtcag aggaaaggaa agaaatcaat
     4621 gaattagaaa acatagaatc acaatgtcaa agttgttttc atgacaaaac aaattggcat
     4681 atttgaacaa gaagaaaaca gagctaaagt aaacaatata aagattgaaa aatgggtcct
     4741 aacccacagc agagatgaaa atgataagag actaccagga gcatcttaat gtatgaaaac
     4801 agacaaaata gaccaaggtc tagaaaagtg ccatttcctt aaattggctg aagaagaaat
     4861 acacaagcta catggactta atagtattga atagaaaata cttttaaaat ttttgataaa
     4921 gaacatctag ctcatgctta cagatgtttt actctttcaa cgaccatact atttcaacat
     4981 attatacaaa ctcttccaaa gaatatataa tgagggaata ctcttcagct cattttctga
     5041 ggcctgtata acttttattg atactagaac cagacacatt tggtaggaga aaagaaaatt
     5101 acagactaat agcacttatt aagacagatc tgaaagtcaa aaccattatt gatgaactga
     5161 attcaacatt atgtaaaaaa ggataatgca tcatggtgaa gttgcataca ttaaaaatca
     5221 ggaacatgac aaggatgcct attatcacta cttctattca tcaatgtcct ataaaaaaat
     5281 gagtaaaaga cagaaaccag gtacccttaa acacatgaaa cacatgaaaa gatgtttaat
     5341 ttcaagtgat caactaatta agatcacaat gaataatatt tcacctgaca gattgaaaaa
     5401 ttaagaaata tgcaatacca atgaagaaga tgtacatcaa gaagatatct aaaggtgggg
     5461 ttgtaaacta ataaactttg gaaagcgatt tggcattatc ttgtaagggt aagcatctgt
     5521 gtactctaaa acctaaccat tctacttcta catacatacc ttaggaaatt cttgcatttg
     5581 tgcacaagag tacgtgtgtg ggaatgttca aggcagccct gtttgaaacc acccaaatgt
     5641 tcgctgacaa gagaataaaa aataaattgt g
//
LOCUS       XM_032648266            5635 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus odr-4 GPCR localization factor homolog
            (ODR4), transcript variant X2, mRNA.
ACCESSION   XM_032648266
VERSION     XM_032648266.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5635
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5635
                     /gene="ODR4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761873"
     CDS             160..1524
                     /gene="ODR4"
                     /codon_start=1
                     /product="protein odr-4 homolog isoform X2"
                     /protein_id="XP_032504157.1"
                     /db_xref="GeneID:116761873"
                     /translation="MGRTYIVEETVSQYLSNISLQGKAFVSGLLIGQCSSQKDYVILA
                     TRTPPKEEQDESSKHSKAKLDNLDEEWATEHANQVSRMLPGGLLVLGVFIITTLEMGN
                     EFQNTLHRLVFAVEKSMNKKRLWNFTDEEVSERVTLHFCSSTKKIFCRTYDIHNPKSS
                     AKPADWKYQNGLSASWLSLECTVYINIHVPLSTTSVSYTLEKNTKNGLIHWAKQIENS
                     IYLINGQVKDEDCDLLEGQKKSSRGNTQAINHSFDVRVLTQLLLNSDHRSTATVQICS
                     GSVNLKGAVKCRAYIHSNKPKVKDAVQAMKRDILNTVADRCEILFEDLLLNEIPEKKD
                     SEKEFHILPHRVFVPIPGSSVMLCDYKFGDESAEEIRDHFIEMLDHMIQIEDLEIAEE
                     INTACVSSSMNTEASLDNTDDEPSKQPIKTTIVLKIQQNIGVIAAFAVAALAAGISFH
                     YFSD"
     misc_feature    241..1326
                     /gene="ODR4"
                     /note="Odorant response abnormal 4-like; Region:
                     ODR4-like; pfam14778"
                     /db_xref="CDD:464311"
ORIGIN      
        1 tgaattcatt gactgtggaa ttgggaccgg tgtggaatct ggttcctgga ggctggtact
       61 tgcactctga acacctttct caggtggtct gacagttcga cagatttgtc tgccacgcgt
      121 gcacagtctg agtgcaggag gttgaattag ttcttaataa tgggaagaac ctacattgta
      181 gaagagactg tcagccagta tctttcaaac atcagtctcc aaggaaaagc ttttgtctct
      241 ggtcttttaa taggacagtg ttcttcacaa aaggattacg tgattcttgc cactagaacg
      301 ccacccaaag aggaacaaga tgagagctcc aaacattcca aagctaagtt ggataacttg
      361 gatgaagaat gggccacaga acatgccaac caggtatcca gaatgctacc agggggactt
      421 ttagttcttg gagtatttat tattacaact ttagaaatgg ggaatgaatt tcaaaatacc
      481 ctacatagac tagtatttgc tgtggaaaaa tctatgaata aaaagagact gtggaatttc
      541 acagacgagg aggtctcaga acgagtgaca cttcactttt gctcttctac aaaaaaaata
      601 ttttgtcgaa cttatgatat ccataatcca aagagttctg caaaaccagc agattggaag
      661 tatcaaaatg gactatcagc ttcatggctt tctttagagt gtacagtata tattaatatt
      721 catgtcccac tgtctactac ttctgtcagc tatactctgg agaaaaatac aaagaatgga
      781 cttatacact gggccaagca aatagaaaat agtatttatt tgattaatgg acaagttaaa
      841 gatgaagatt gtgacctatt agaaggacag aaaaaatctt ctagaggaaa tactcaagca
      901 attaatcatt cttttgatgt cagagtgcta acacagttgc ttctgaattc agaccacaga
      961 tccacagcca cagtccagat ctgcagtggc tctgtaaacc ttaagggtgc tgtgaaatgc
     1021 agagcttata ttcatagcaa taaacccaag gttaaagatg ctgtacaggc catgaaaaga
     1081 gatatattga atacagttgc tgatcgttgt gaaatactat ttgaggatct gcttttgaat
     1141 gaaattccag aaaaaaaaga ttctgaaaaa gagttccaca tcctccctca ccgagttttt
     1201 gtccccattc cgggatcctc tgtaatgtta tgtgattata aatttggtga tgagtcagct
     1261 gaagaaatta gagaccattt tatagagatg ttagatcata tgattcaaat agaagatttg
     1321 gaaattgcag aggaaataaa cacagcctgt gtaagttcct ctatgaatac tgaagcttca
     1381 ttggacaaca cagatgatga accatcaaaa cagccaatta aaactacaat agtgttgaaa
     1441 attcagcaaa acataggtgt gattgcagca tttgcagttg cagcccttgc tgcgggtatc
     1501 tcctttcatt acttcagtga ttagggtgag gcacaaagag cttcctgatc atccagagaa
     1561 cactgaccaa caattatgaa taataatgat gcaaacaatc catctgcgtc taagacaata
     1621 gcagtcagat ctgctgccat aatgcctatt aggtgtgttt ctgactaaaa tgaaatcacc
     1681 agctgccttg tttagccctg cttatattat aggtggctca ggcttccaag aataaagtta
     1741 tgaatctaga tggaagttgc atgtaacaaa tcgttattat ctatttttta aaatgttcaa
     1801 aatgatggtt tattttcata ggttttagtc ctgttgacct gaaccacata ttgatcagga
     1861 cattggaaat ttgaatagtc agggttgact gaatatatta gtaatagaac aatagaaatt
     1921 tctgcaaagt ggggcaaaaa cttattggat aagttcatag tttaggacct ttctatactg
     1981 attccaaaat actgattgag ttccatctga ggggtaggaa acctctccag acctcttgaa
     2041 tcagcaagga ttgtcataaa tcatgagctt tctctggtta gtatatcata acctaatata
     2101 ttaaataaga cttttgcttc cagtaatata ttaggtactg caaaacagct agatcctgaa
     2161 taaaatctcc ttttgaatac attaataggc tcaaagaaag taggggaaat ctccaagaac
     2221 tacacctcta ttttttctcc ttgacaaaat gaacacgttt tgatatggaa attgtgaaaa
     2281 ctatattaag cataaggttg acagtggttg cctgggtgac aaataccaat tgcagcactg
     2341 ccatatgcag ttttccttag accagaaaca aggagataaa tctgaatctg agatgtccca
     2401 tccaggacag ttgaagtggg cctcagtttg taatacccta tagttcctgg cagaaacaag
     2461 atgtaggccc cagattccca tagattaaga taagcaatat tattcatggc tggagatgac
     2521 caggtgcaag ttgaaactag ctagcttgag aaagaacctg tagatataaa ctttggactc
     2581 aattttccaa ggtcttatca tcaacataca tgaaggatgg aaccacagac tgatctgaaa
     2641 aagaaacaag tggaactgct tgatgagaaa tatgttactt gcaatttaaa aaaagaaaaa
     2701 cccttagaca tgttgaatat catattagac tcagctgaag agacaataca taaactggaa
     2761 gctagatata aggaaattac ccaatgtgca gccaggagaa acaaggtgct agaaaataca
     2821 aatattaagg aaaagataag agatatagaa ggaagaatta tgaatactag aattaccagc
     2881 agaagagaat agagaggatg gaggagtggc aatatttgaa gagataacag aattttccac
     2941 atttgttgga aaaacacgaa ttcataagtt caggaagcac aatgtatccc aagcatatat
     3001 agataaaatc caagcctaaa cccagtgtag tataactgtg agataccaaa cagaggattc
     3061 ttaaagcaat caaaggggga aaaagattat cagtgaaggc aagacagata cttcagaaag
     3121 cttctcaaca gcaacaatgt actccaaagg tggtagaata gtgccttcaa aattctgaga
     3181 aaaacagttg tcaacttgga atctgtatga agcaaaactg aaataaatat atattcaagt
     3241 gaaaaacaga ttttaccatc agtggaactt ctttaaagaa attgcaaaag gattatcttc
     3301 aagaaggaaa ataattccaa aaggatctga aattgaagaa ctagtaagca aataaatgaa
     3361 aaacatgtaa atcaaaagta ttgtttgtat aaaacaatcg taatgaaaga agtgtttata
     3421 agaagcaaga gtgtaactaa gtaaaactaa ataaacattt tatgcaacat taatgtggac
     3481 tttaaaaata ggatataatt gaaaaactgg acagtagctt ataagatggg gggtggttag
     3541 aattaaagtg ttctgaagtg ttttattatt cagaaaatgg gttaaggtac tgtttaactt
     3601 tgaaattatg ttaaatatgt gtagtaaaat ttcaggtgta actgctaaat aatagatatg
     3661 ggatgaatca ttccaaagaa aaaagttaaa aatatggaat aagaagacaa tacctcaata
     3721 caaaaaaaag ggaaagaaat taggggtggg ggaagtacaa aattagtaag ataaatagta
     3781 acaagtcaaa taattaaaat aactatgaat aggctaaacc cagttaaaaa cattgatttc
     3841 agttttttaa aaatcagcta taggctgata tgggattttt taaaggataa aaaaatgcac
     3901 taggcaaata gtaaaagaaa acttatgtag ctttggtgct atcaactcaa aattagactt
     3961 tattatatta ttattaaaga tggagaagac cactaaataa tggtaaaagg atcaatttat
     4021 taggaatata tacaatttta gatttgtata tgctttataa aatggcctca aaatgtataa
     4081 actagggctg aaccaacaaa ttgaacagca gtgggtgatt ttaacagctc tcaattacta
     4141 ataaatcaac tagacaaaaa aatgaatgaa aacacagttt tgaataatgc aattaacaat
     4201 gctgattcga tgaacatatt tagaataatc aacagaatat tcttaagcat tgtgtattag
     4261 caaaaattga ccatgtatta ggtatgaagt aagttacaat aaatttcaaa aaattagtat
     4321 taaataataa gaaataactt aggttaattt tttttaatca tggttttaca agtttaaaaa
     4381 aacttcatag atgaaaaaaa accataatta gtacctaatt ataaatacta catttggaaa
     4441 aattgggtga tgcagcagaa agagcgctta gaggggaatg gttttaaatg cttaaattaa
     4501 aggctaagtg tataacttag gaaaaggaca acagaataaa cacagtatag aagcaaggag
     4561 tcagaggaaa ggaaagaaat caatgaatta gaaaacatag aatcacaatg tcaaagttgt
     4621 tttcatgaca aaacaaattg gcatatttga acaagaagaa aacagagcta aagtaaacaa
     4681 tataaagatt gaaaaatggg tcctaaccca cagcagagat gaaaatgata agagactacc
     4741 aggagcatct taatgtatga aaacagacaa aatagaccaa ggtctagaaa agtgccattt
     4801 ccttaaattg gctgaagaag aaatacacaa gctacatgga cttaatagta ttgaatagaa
     4861 aatactttta aaatttttga taaagaacat ctagctcatg cttacagatg ttttactctt
     4921 tcaacgacca tactatttca acatattata caaactcttc caaagaatat ataatgaggg
     4981 aatactcttc agctcatttt ctgaggcctg tataactttt attgatacta gaaccagaca
     5041 catttggtag gagaaaagaa aattacagac taatagcact tattaagaca gatctgaaag
     5101 tcaaaaccat tattgatgaa ctgaattcaa cattatgtaa aaaaggataa tgcatcatgg
     5161 tgaagttgca tacattaaaa atcaggaaca tgacaaggat gcctattatc actacttcta
     5221 ttcatcaatg tcctataaaa aaatgagtaa aagacagaaa ccaggtaccc ttaaacacat
     5281 gaaacacatg aaaagatgtt taatttcaag tgatcaacta attaagatca caatgaataa
     5341 tatttcacct gacagattga aaaattaaga aatatgcaat accaatgaag aagatgtaca
     5401 tcaagaagat atctaaaggt ggggttgtaa actaataaac tttggaaagc gatttggcat
     5461 tatcttgtaa gggtaagcat ctgtgtactc taaaacctaa ccattctact tctacataca
     5521 taccttagga aattcttgca tttgtgcaca agagtacgtg tgtgggaatg ttcaaggcag
     5581 ccctgtttga aaccacccaa atgttcgctg acaagagaat aaaaaataaa ttgtg
//
LOCUS       XR_004352150            7550 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus odr-4 GPCR localization factor homolog
            (ODR4), transcript variant X3, misc_RNA.
ACCESSION   XR_004352150
VERSION     XR_004352150.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7550
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7550
                     /gene="ODR4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 96% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116761873"
     misc_RNA        1..7550
                     /gene="ODR4"
                     /product="odr-4 GPCR localization factor homolog,
                     transcript variant X3"
                     /db_xref="GeneID:116761873"
ORIGIN      
        1 gaattcattg actgtggaat tgggaccggt gtggaatctg gttcctggag gctggtactt
       61 gcactctgaa cacctttctc aggtggtctg acagttcgac agatttgtct gccacgcgtg
      121 cacagtctga gtgcaggagg ttgaattagt tcttaataat gggaagaacc tacattgtag
      181 aagagactgt cagccagtat ctttcaaaca tcagtctcca aggaaaagct tttgtctctg
      241 gtcttttaat aggacagtgt tcttcacaaa aggattacgt gattcttgcc actagaacgc
      301 cacccaaaga ggaacaagat gagagctcca aacattccaa agctaagttg gataacttgg
      361 atgaagaatg ggccacagaa catgccaacc aggtatccag aatgctacca gggggacttt
      421 tagttcttgg agtatttatt attacaactt tagaaatggg gaatgaattt caaaataccc
      481 tacatagact agtatttgct gtggaaaaat ctatgaataa aaagagactg tggaatttca
      541 cagacgagga ggtctcagaa cgagtgacac ttcacttttg ctcttctaca aaaaaaatat
      601 tttgtcgaac ttatgatatc cataatccaa aggtaagaaa aactgctctt tatagatttt
      661 tctgtgttgc aaactatttt taaataacat tcaattttta gttttaataa ttttcagtgc
      721 tatctcttcc tattaatgtc cacaaccacc tgtagttttt tattttgaaa tatgattttc
      781 actacagaca aggacaattt gtgttttttt tttaattgtt aaaatatttt tgttaagctc
      841 tccctacttt gtttatgtgt ctggtattat atttgagagg ctagcagtaa aagtgtctag
      901 gcttgtggga gccacagtgc ccagtaaaca agctgtctgt actcagcagg atccagacta
      961 acattttgcc aaggtgtcta aaaagcaatg tgagggactt ccctggtggt ccagtggtta
     1021 agattctatg cttctactgt aggggggcac aggtttgatc cctggtcagg gaactaagat
     1081 cccacaggcc atgcagtgtg gccaaaaaaa aaaaaaaaaa agcagtgtga aagtaatgca
     1141 gtattctgtt agcaaggata gaacagaaag gaaaatgtct ggcacctagt atttgctcag
     1201 tgattattta ctctccatca gaagcttcag aattgacact gttgaagcta catatgggac
     1261 ctacgggacc agaggacttg tcaggatttt aagcaagcct ttcactgggc gagggagttg
     1321 ccaagattgc ctgggatgtg ctgaagaata ctgaactttt aatgcatgct ttatttttat
     1381 ttagttctaa cctattaccc tttgatgaag gaatttggcc atatatatta gataacagct
     1441 tgcataagtt actgggttgt acattttatg atgttttctt gctctgtgtg ttttacgtaa
     1501 atcacatatt ttatgttttt ccccctttgc taaagagttc tgcaaaacca gcagattgga
     1561 agtatcaaaa tggactatca gcttcatggc tttctttaga gtgtacagta tatattaata
     1621 ttcatgtccc actgtctact acttctgtca gctatactct ggagaaaaat acaaaggtat
     1681 cagggtaaaa tgaattttct ttagtgattg ctgaatagat gatgggcctt tattctggtt
     1741 gtctatgcca ttcattttat aatcctcaaa aactgcattc taattataat aatattgtta
     1801 tgggtaacta atttgttact ctacccagat taaaaaatta gaggtgggac attgttatca
     1861 tactaatgta tttagcgtaa taagtgctcc ataaatattt gttaattaac atgtaattat
     1921 gtacattgta aaatataatt atgtaggaag atgtactgtt tggtcttttt gctttctctt
     1981 cgtctttagt ttttttaaaa atttatttca ttgaaatata gttgatttac aatgttgtgt
     2041 taatttctcc tgtacagcaa agtgattcat atattctttt tcatattctt tttgattatg
     2101 ggttatcaca gggtattgaa tatggattga cagtttggga ttagcagatg catactgtta
     2161 tatatagaat ggataaacaa caaggtccta ctgtatagca cagggaacta tcttcatctt
     2221 tagttttgtt ttccatcttc cagttctttt ttgtatttct gtaccattct tttgttcata
     2281 acttatttct cttatttttt cctattgaaa gaggtaaatg gaacttgctt attttttcct
     2341 ctttaatact gctttatata tttgtttgag gcgctttctc ttttctcact ttttttaaga
     2401 taacaggaat tattgaattt tatttgactg tggttattaa gtctcctagg tctgtgacat
     2461 aaacgttagt ttgggaaaaa gattagaaaa actattatta aatatgggtg aagtgctaaa
     2521 aattgggggt atactttttt gttgtttatg atattgaatt taaatgccat attgctgata
     2581 cttagggatt tttaatattt cagtatacta ggtagaaaaa agtcgactcg agggagttta
     2641 attgagatgg cattatattt gaatgatatc catgttgtgt ttcttttaag aatggactta
     2701 tacactgggc caagcaaata gaaaatagta tttatttgat taatggacaa gttaaagatg
     2761 aagattgtga cctattagaa ggacagaaaa aatcttctag aggaaatact caagcaatta
     2821 atcattcttt tgatgtcaga gtgctaacac agttgcttct gaattcagac cacagatcca
     2881 cagccacagt ccagatctgc agtggctctg taaaccttaa gggtgctgtg aaatgcagag
     2941 cttatattca tagcaataaa cccaaggtta aagatgctgt acaggccatg aaaagagata
     3001 tattgaatac agttgctgat cgttgtgaaa tactatttga ggatctgctt ttgaatgaaa
     3061 ttccagaaaa aaaaattctg aaaaagagtt ccacatcctc cctcaccgag tttttgtccc
     3121 cattccggga tcctctgtaa tgttatgtga ttataaattt ggtgatgagt cagctgaaga
     3181 aattagagac cattttatag agatgttaga tcatatgatt caaatagaag atttggaaat
     3241 tgcagaggaa ataaacacag cctgtgtaag ttcctctatg aatactgaag cttcattgga
     3301 caacacagat gatgaaccat caaaacagcc aattaaaact acaatagtgt tgaaaattca
     3361 gcaaaacata ggtgtgattg cagcatttgc agttgcagcc cttgctgcgg gtatctcctt
     3421 tcattacttc agtgattagg gtgaggcaca aagagcttcc tgatcatcca gagaacactg
     3481 accaacaatt atgaataata atgatgcaaa caatccatct gcgtctaaga caatagcagt
     3541 cagatctgct gccataatgc ctattaggtg tgtttctgac taaaatgaaa tcaccagctg
     3601 ccttgtttag ccctgcttat attataggtg gctcaggctt ccaagaataa agttatgaat
     3661 ctagatggaa gttgcatgta acaaatcgtt attatctatt ttttaaaatg ttcaaaatga
     3721 tggtttattt tcataggttt tagtcctgtt gacctgaacc acatattgat caggacattg
     3781 gaaatttgaa tagtcagggt tgactgaata tattagtaat agaacaatag aaatttctgc
     3841 aaagtggggc aaaaacttat tggataagtt catagtttag gacctttcta tactgattcc
     3901 aaaatactga ttgagttcca tctgaggggt aggaaacctc tccagacctc ttgaatcagc
     3961 aaggattgtc ataaatcatg agctttctct ggttagtata tcataaccta atatattaaa
     4021 taagactttt gcttccagta atatattagg tactgcaaaa cagctagatc ctgaataaaa
     4081 tctccttttg aatacattaa taggctcaaa gaaagtaggg gaaatctcca agaactacac
     4141 ctctattttt tctccttgac aaaatgaaca cgttttgata tggaaattgt gaaaactata
     4201 ttaagcataa ggttgacagt ggttgcctgg gtgacaaata ccaattgcag cactgccata
     4261 tgcagttttc cttagaccag aaacaaggag ataaatctga atctgagatg tcccatccag
     4321 gacagttgaa gtgggcctca gtttgtaata ccctatagtt cctggcagaa acaagatgta
     4381 ggccccagat tcccatagat taagataagc aatattattc atggctggag atgaccaggt
     4441 gcaagttgaa actagctagc ttgagaaaga acctgtagat ataaactttg gactcaattt
     4501 tccaaggtct tatcatcaac atacatgaag gatggaacca cagactgatc tgaaaaagaa
     4561 acaagtggaa ctgcttgatg agaaatatgt tacttgcaat ttaaaaaaag aaaaaccctt
     4621 agacatgttg aatatcatat tagactcagc tgaagagaca atacataaac tggaagctag
     4681 atataaggaa attacccaat gtgcagccag gagaaacaag gtgctagaaa atacaaatat
     4741 taaggaaaag ataagagata tagaaggaag aattatgaat actagaatta ccagcagaag
     4801 agaatagaga ggatggagga gtggcaatat ttgaagagat aacagaattt tccacatttg
     4861 ttggaaaaac acgaattcat aagttcagga agcacaatgt atcccaagca tatatagata
     4921 aaatccaagc ctaaacccag tgtagtataa ctgtgagata ccaaacagag gattcttaaa
     4981 gcaatcaaag ggggaaaaag attatcagtg aaggcaagac agatacttca gaaagcttct
     5041 caacagcaac aatgtactcc aaaggtggta gaatagtgcc ttcaaaattc tgagaaaaac
     5101 agttgtcaac ttggaatctg tatgaagcaa aactgaaata aatatatatt caagtgaaaa
     5161 acagatttta ccatcagtgg aacttcttta aagaaattgc aaaaggatta tcttcaagaa
     5221 ggaaaataat tccaaaagga tctgaaattg aagaactagt aagcaaataa atgaaaaaca
     5281 tgtaaatcaa aagtattgtt tgtataaaac aatcgtaatg aaagaagtgt ttataagaag
     5341 caagagtgta actaagtaaa actaaataaa cattttatgc aacattaatg tggactttaa
     5401 aaataggata taattgaaaa actggacagt agcttataag atggggggtg gttagaatta
     5461 aagtgttctg aagtgtttta ttattcagaa aatgggttaa ggtactgttt aactttgaaa
     5521 ttatgttaaa tatgtgtagt aaaatttcag gtgtaactgc taaataatag atatgggatg
     5581 aatcattcca aagaaaaaag ttaaaaatat ggaataagaa gacaatacct caatacaaaa
     5641 aaaagggaaa gaaattaggg gtgggggaag tacaaaatta gtaagataaa tagtaacaag
     5701 tcaaataatt aaaataacta tgaataggct aaacccagtt aaaaacattg atttcagttt
     5761 tttaaaaatc agctataggc tgatatggga ttttttaaag gataaaaaaa tgcactaggc
     5821 aaatagtaaa agaaaactta tgtagctttg gtgctatcaa ctcaaaatta gactttatta
     5881 tattattatt aaagatggag aagaccacta aataatggta aaaggatcaa tttattagga
     5941 atatatacaa ttttagattt gtatatgctt tataaaatgg cctcaaaatg tataaactag
     6001 ggctgaacca acaaattgaa cagcagtggg tgattttaac agctctcaat tactaataaa
     6061 tcaactagac aaaaaaatga atgaaaacac agttttgaat aatgcaatta acaatgctga
     6121 ttcgatgaac atatttagaa taatcaacag aatattctta agcattgtgt attagcaaaa
     6181 attgaccatg tattaggtat gaagtaagtt acaataaatt tcaaaaaatt agtattaaat
     6241 aataagaaat aacttaggtt aatttttttt aatcatggtt ttacaagttt aaaaaaactt
     6301 catagatgaa aaaaaaccat aattagtacc taattataaa tactacattt ggaaaaattg
     6361 ggtgatgcag cagaaagagc gcttagaggg gaatggtttt aaatgcttaa attaaaggct
     6421 aagtgtataa cttaggaaaa ggacaacaga ataaacacag tatagaagca aggagtcaga
     6481 ggaaaggaaa gaaatcaatg aattagaaaa catagaatca caatgtcaaa gttgttttca
     6541 tgacaaaaca aattggcata tttgaacaag aagaaaacag agctaaagta aacaatataa
     6601 agattgaaaa atgggtccta acccacagca gagatgaaaa tgataagaga ctaccaggag
     6661 catcttaatg tatgaaaaca gacaaaatag accaaggtct agaaaagtgc catttcctta
     6721 aattggctga agaagaaata cacaagctac atggacttaa tagtattgaa tagaaaatac
     6781 ttttaaaatt tttgataaag aacatctagc tcatgcttac agatgtttta ctctttcaac
     6841 gaccatacta tttcaacata ttatacaaac tcttccaaag aatatataat gagggaatac
     6901 tcttcagctc attttctgag gcctgtataa cttttattga tactagaacc agacacattt
     6961 ggtaggagaa aagaaaatta cagactaata gcacttatta agacagatct gaaagtcaaa
     7021 accattattg atgaactgaa ttcaacatta tgtaaaaaag gataatgcat catggtgaag
     7081 ttgcatacat taaaaatcag gaacatgaca aggatgccta ttatcactac ttctattcat
     7141 caatgtccta taaaaaaatg agtaaaagac agaaaccagg tacccttaaa cacatgaaac
     7201 acatgaaaag atgtttaatt tcaagtgatc aactaattaa gatcacaatg aataatattt
     7261 cacctgacag attgaaaaat taagaaatat gcaataccaa tgaagaagat gtacatcaag
     7321 aagatatcta aaggtggggt tgtaaactaa taaactttgg aaagcgattt ggcattatct
     7381 tgtaagggta agcatctgtg tactctaaaa cctaaccatt ctacttctac atacatacct
     7441 taggaaattc ttgcatttgt gcacaagagt acgtgtgtgg gaatgttcaa ggcagccctg
     7501 tttgaaacca cccaaatgtt cgctgacaag agaataaaaa ataaattgtg
//
LOCUS       XM_032648282            2618 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus basic transcription factor 3 like 4
            (BTF3L4), transcript variant X1, mRNA.
ACCESSION   XM_032648282
VERSION     XM_032648282.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2618
                     /gene="BTF3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 13 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761881"
     CDS             137..613
                     /gene="BTF3L4"
                     /codon_start=1
                     /product="transcription factor BTF3 homolog 4 isoform X1"
                     /protein_id="XP_032504173.1"
                     /db_xref="GeneID:116761881"
                     /translation="MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLK
                     KLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGIL
                     SQLGADSLTSLRKLAEQFPRQVLDSKTPKPEDIDEEDDDVPDLVENFDEASKNEAN"
     misc_feature    146..496
                     /gene="BTF3L4"
                     /note="basal transcription factor BTF3; Region: NAC_BTF3;
                     cd22055"
                     /db_xref="CDD:409234"
     misc_feature    200..214
                     /gene="BTF3L4"
                     /note="ribosome binding motif; other site"
                     /db_xref="CDD:409234"
     misc_feature    order(290..322,335..337,341..343,377..397,401..403,
                     443..451)
                     /gene="BTF3L4"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409234"
ORIGIN      
        1 gccggatgtg tcacgtggga ccgactcccg ccggcgcggc cgccttcgtc tttctctgtc
       61 tcgactgagg tagccatctt gctcttgctg cgtgctggtg ttggagaacc ctccttgctt
      121 cagatttacc aacagcatga atcaagaaaa gttagccaaa cttcaggctc aggtccggat
      181 agggggcaag ggtacagcgc gcagaaagaa gaaggtggta catagaacag ctacagctga
      241 tgacaaaaaa cttcagagtt ctctaaaaaa actggctgtg aataatatag ctggtattga
      301 agaggtgaac atgattaaag atgatgggac agttattcat ttcaacaatc ccaaagtcca
      361 agcttccctt tctgctaaca cctttgcgat tactggccat gctgaagcca aaccaatcac
      421 agaaatgctt cctggaatat taagtcagct tggtgctgac agcttaacaa gtcttaggaa
      481 gttagctgaa cagttccctc ggcaagtgtt ggatagcaaa acaccaaaac cagaagacat
      541 tgatgaggag gatgatgatg ttccagatct cgtagaaaat tttgatgagg catcaaagaa
      601 tgaagctaac taaaattttt tctggttttt ggaagctggc atggactaga tttaacaaat
      661 cagctatgtg gttccaaagt tttacagaca cggagaacat cagctgttac tagttcagta
      721 atataaatat tttgtatatt aataatgctg tttgttcagc atttttcgat catttgattt
      781 tgcattttgc acttcctccc aggatctatt cttttggtca aaatacgaag tgttggtgca
      841 gtttgagggt gttttgggtt ttgattcttg gtttttttgt tttgtttttt gttggggtat
      901 ttttagtgtg tgtatgtgta tgtatgcgtg tgggtatgtg tgtatacagt ggagagcaaa
      961 ttggaaagca gttttattta tcctcctcct taccccagta gaaataaaac aaatctttac
     1021 atttgttact ttttattttt tctaatgatg cacagaatta atgaaaagtg agtatcttgg
     1081 atttcaaatc aggagatttt acccttggag gtttggtttt aatttgcttc gttaacatat
     1141 ttctcataca tttttctggg tttaaaatgt cttgagatat tttgtcacca gcttcatgct
     1201 ggcataatgg gtagcatatc tttggtgcag ttgccttgga ttcacttact taggattcac
     1261 ttacctagtt agacccagag gaatttcttc tactagtttt tgtcctaaat gccttgtttt
     1321 ctcccctttt ggtctctaaa tggcccggtt agcctttagt aatgctgttc ctcatcttcc
     1381 atctagcctg agaaggatgt tctccatata gagttaagtg agtgcctaat ccctcttttt
     1441 gtaagattgt tcccacatct tgaggaacaa cagctccatc ttcaacttct tattcttttg
     1501 attttacagt ttggtagatt tcaaactgga atagctagca tgtgcttgct aaataatttt
     1561 atgccagcct tatcctgtat cccagctgtt cttaatagca ggtgcaaaaa tgcctctttt
     1621 tcagcaaggt tgaaattggg aatgtcctgt tgaatcagaa aaaatgggcc atagactcat
     1681 tccccagcac aaatgggcat tctatgaaat ggtactggcc ccaggaggat ttcttcaacc
     1741 actcctctac tcttggcctt gaacctacct ctggattgga tcttactatt gtagctgctc
     1801 atagcatcct cctgcatgct tagagtaatg ctttggggga acactggtaa aacacagtat
     1861 ttattttttc acctcctttc agaggacttg gaggtaagtt gcattcattc attgacgctt
     1921 ccctcttgcc gtcttataaa agcttgcact ttgttatatc agcatttgtt atagccaata
     1981 tttaaggata agatttagaa gtctatcatg gcccatcatc aaactatggc ttaaccttgc
     2041 agcatatcaa cttttgtttc aagctagata tctttatttg atatctctag tgcaagacca
     2101 acatatcaag agatctatag acacgaaggc aaaggtcttg tatttttttc catccagaca
     2161 cctcaattta ttttatacat ttgttgattt ttcctgttat gttttatata tatggagtta
     2221 actacaaaat aaaataacag taataaaata acaaaagagg ataatatttc ctcttgtgct
     2281 tctctttttg ttgtctacag aatttacttc ttttgtattt tccctctcct cctcaccccc
     2341 aaatgaattt caacctagtc tttttttgaa attatgcttc atccattgtt agatcagtag
     2401 ctctacatgg tctacatagt ccagaatgct gttcctctga ctgtccccaa agggcacatt
     2461 gtggggcaga gagagttaag gggacttcaa gtggttaggg aaacttaaga ggtagtatac
     2521 gaaatgggca gaagaagcac tcatgtggaa ttcaggagaa ttggatccta gtccaaactc
     2581 tggcattaac cgtatgacct tgggcaggtc atctaacc
//
LOCUS       XM_032648288            1233 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus basic transcription factor 3 like 4
            (BTF3L4), transcript variant X2, mRNA.
ACCESSION   XM_032648288
VERSION     XM_032648288.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1233
                     /gene="BTF3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 17 Proteins, and
                     91% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761881"
     CDS             342..818
                     /gene="BTF3L4"
                     /codon_start=1
                     /product="transcription factor BTF3 homolog 4 isoform X1"
                     /protein_id="XP_032504179.1"
                     /db_xref="GeneID:116761881"
                     /translation="MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLK
                     KLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGIL
                     SQLGADSLTSLRKLAEQFPRQVLDSKTPKPEDIDEEDDDVPDLVENFDEASKNEAN"
     misc_feature    351..701
                     /gene="BTF3L4"
                     /note="basal transcription factor BTF3; Region: NAC_BTF3;
                     cd22055"
                     /db_xref="CDD:409234"
     misc_feature    405..419
                     /gene="BTF3L4"
                     /note="ribosome binding motif; other site"
                     /db_xref="CDD:409234"
     misc_feature    order(495..527,540..542,546..548,582..602,606..608,
                     648..656)
                     /gene="BTF3L4"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409234"
ORIGIN      
        1 gactgaggta gccatcttgc tcttgctgcg tgctggtgtt ggagaaccct ccttgcttca
       61 ggtgagaccc ccggcggtcc cgccactcca cggccttagg ccgctgcgca cgatctcccc
      121 acgccctttt ctgccgacac ccgccaactg ctggggctgc cacttccgct gtggcgcgcc
      181 gagtgggggc ggaggcggct ggcttggcct ctcggttacc ggcggcgcag ctgggggtcg
      241 gcacctgagg gaaggtcccc agcaccaccg ctttctgtga gcgagcgggc ctgcgctgtt
      301 gccgcccaga tccagtccca ggaggcagat ttaccaacag catgaatcaa gaaaagttag
      361 ccaaacttca ggctcaggtc cggatagggg gcaagggtac agcgcgcaga aagaagaagg
      421 tggtacatag aacagctaca gctgatgaca aaaaacttca gagttctcta aaaaaactgg
      481 ctgtgaataa tatagctggt attgaagagg tgaacatgat taaagatgat gggacagtta
      541 ttcatttcaa caatcccaaa gtccaagctt ccctttctgc taacaccttt gcgattactg
      601 gccatgctga agccaaacca atcacagaaa tgcttcctgg aatattaagt cagcttggtg
      661 ctgacagctt aacaagtctt aggaagttag ctgaacagtt ccctcggcaa gtgttggata
      721 gcaaaacacc aaaaccagaa gacattgatg aggaggatga tgatgttcca gatctcgtag
      781 aaaattttga tgaggcatca aagaatgaag ctaactaaaa ttttttctgg tttttggaag
      841 ctggcatgga ctagatttaa caaatcagct atgtggttcc aaagttttac agacacggag
      901 aacatcagct gttactagtt cagtaatata aatattttgt atattaataa tgctgtttgt
      961 tcagcatttt tcgatcattt gattttgcat tttgcacttc ctcccaggat ctattctttt
     1021 ggtcaaaata cgaagtgttg gtgcagtttg agggtgtttt gggttttgat tcttggtttt
     1081 tttgttttgt tttttgttgg ggtattttta gtgtgtgtat gtgtatgtat gcgtgtgggt
     1141 atgtgtgtat acagtggaga gcaaattgga aagcagtttt atttatcctc ctccttaccc
     1201 cagtagaaat aaaacaaatc tttacatttg tta
//
LOCUS       XM_032648299            2231 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus basic transcription factor 3 like 4
            (BTF3L4), transcript variant X3, mRNA.
ACCESSION   XM_032648299
VERSION     XM_032648299.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2231
                     /gene="BTF3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 98% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116761881"
     CDS             260..562
                     /gene="BTF3L4"
                     /codon_start=1
                     /product="transcription factor BTF3 homolog 4 isoform X2"
                     /protein_id="XP_032504190.1"
                     /db_xref="GeneID:116761881"
                     /translation="MIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGIL
                     SQLGADSLTSLRKLAEQFPRQVLDSKTPKPEDIDEEDDDVPDLVENFDEASKNEAN"
     misc_feature    <260..445
                     /gene="BTF3L4"
                     /note="basal transcription factor BTF3; Region: NAC_BTF3;
                     cd22055"
                     /db_xref="CDD:409234"
ORIGIN      
        1 ttattttctc tgtgttccag gtcttgcctg aaatttagaa gcccctttct tccccttcct
       61 ttctggtgct gtctatcagt ggtggtgatc acctctgagg aagaaaagcc cacttgcact
      121 gaccatggag aacactcagc atctctgctt gattgtgaca agggcagttt ttggatggat
      181 catgaaatgc ttctaaagta gccaagagtt aactttcgta acctttttat ataataagca
      241 tgttaccacc aaggtgaaca tgattaaaga tgatgggaca gttattcatt tcaacaatcc
      301 caaagtccaa gcttcccttt ctgctaacac ctttgcgatt actggccatg ctgaagccaa
      361 accaatcaca gaaatgcttc ctggaatatt aagtcagctt ggtgctgaca gcttaacaag
      421 tcttaggaag ttagctgaac agttccctcg gcaagtgttg gatagcaaaa caccaaaacc
      481 agaagacatt gatgaggagg atgatgatgt tccagatctc gtagaaaatt ttgatgaggc
      541 atcaaagaat gaagctaact aaaatttttt ctggtttttg gaagctggca tggactagat
      601 ttaacaaatc agctatgtgg ttccaaagtt ttacagacac ggagaacatc agctgttact
      661 agttcagtaa tataaatatt ttgtatatta ataatgctgt ttgttcagca tttttcgatc
      721 atttgatttt gcattttgca cttcctccca ggatctattc ttttggtcaa aatacgaagt
      781 gttggtgcag tttgagggtg ttttgggttt tgattcttgg tttttttgtt ttgttttttg
      841 ttggggtatt tttagtgtgt gtatgtgtat gtatgcgtgt gggtatgtgt gtatacagtg
      901 gagagcaaat tggaaagcag ttttatttat cctcctcctt accccagtag aaataaaaca
      961 aatctttaca tttgttactt tttatttttt ctaatgatgc acagaattaa tgaaaagtga
     1021 gtatcttgga tttcaaatca ggagatttta cccttggagg tttggtttta atttgcttcg
     1081 ttaacatatt tctcatacat ttttctgggt ttaaaatgtc ttgagatatt ttgtcaccag
     1141 cttcatgctg gcataatggg tagcatatct ttggtgcagt tgccttggat tcacttactt
     1201 aggattcact tacctagtta gacccagagg aatttcttct actagttttt gtcctaaatg
     1261 ccttgttttc tccccttttg gtctctaaat ggcccggtta gcctttagta atgctgttcc
     1321 tcatcttcca tctagcctga gaaggatgtt ctccatatag agttaagtga gtgcctaatc
     1381 cctctttttg taagattgtt cccacatctt gaggaacaac agctccatct tcaacttctt
     1441 attcttttga ttttacagtt tggtagattt caaactggaa tagctagcat gtgcttgcta
     1501 aataatttta tgccagcctt atcctgtatc ccagctgttc ttaatagcag gtgcaaaaat
     1561 gcctcttttt cagcaaggtt gaaattggga atgtcctgtt gaatcagaaa aaatgggcca
     1621 tagactcatt ccccagcaca aatgggcatt ctatgaaatg gtactggccc caggaggatt
     1681 tcttcaacca ctcctctact cttggccttg aacctacctc tggattggat cttactattg
     1741 tagctgctca tagcatcctc ctgcatgctt agagtaatgc tttgggggaa cactggtaaa
     1801 acacagtatt tattttttca cctcctttca gaggacttgg aggtaagttg cattcattca
     1861 ttgacgcttc cctcttgccg tcttataaaa gcttgcactt tgttatatca gcatttgtta
     1921 tagccaatat ttaaggataa gatttagaag tctatcatgg cccatcatca aactatggct
     1981 taaccttgca gcatatcaac ttttgtttca agctagatat ctttatttga tatctctagt
     2041 gcaagaccaa catatcaaga gatctataga cacgaaggca aaggtcttgt atttttttcc
     2101 atccagacac ctcaatttat tttatacatt tgttgatttt tcctgttatg ttttatatat
     2161 atggagttaa ctacaaaata aaataacagt aataaaataa caaaagagga taatatttcc
     2221 tcttgtgctt c
//
LOCUS       XR_004352161            5343 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus basic transcription factor 3 like 4
            (BTF3L4), transcript variant X4, misc_RNA.
ACCESSION   XR_004352161
VERSION     XR_004352161.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5343
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5343
                     /gene="BTF3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, and 89%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761881"
     misc_RNA        1..5343
                     /gene="BTF3L4"
                     /product="basic transcription factor 3 like 4, transcript
                     variant X4"
                     /db_xref="GeneID:116761881"
ORIGIN      
        1 gtgtcacgtg ggaccgactc ccgccggcgc ggccgccttc gtctttctct gtctcgactg
       61 aggtagccat cttgctcttg ctgcgtgctg gtgttggaga accctccttg cttcagattt
      121 accaacagca tgaatcaaga aaagttagcc aaacttcagg ctcaggtccg gatagggggc
      181 aagggtacag cgcgcagaaa gaagaaggtg gtacatagaa cagctacagc tgatgacaaa
      241 aaacttcaga gttctctaaa aaaactggct gtgaataata tagctggtat tgaagaggtc
      301 ttgcctgaaa tttagaagcc cctttcttcc ccttcctttc tggtgctgtc tatcagtggt
      361 ggtgatcacc tctgaggaag aaaagcccac ttgcactgac catggagaac actcagcatc
      421 tctgcttgat tgtgacaagg gcagtttttg gatggatcat gaaatgcttc taaagtagcc
      481 aagagttaac tttcgtaacc tttttatata ataagcatgt taccaccaag gtgaacatga
      541 ttaaagatga tgggacagtt attcatttca acaatcccaa agtccaagct tccctttctg
      601 ctaacacctt tgcgattact ggccatgctg aagccaaacc aatcacagaa atgcttcctg
      661 gaatattaag tcagcttggt gctgacagct taacaagtct taggaagtta gctgaacagt
      721 tccctcggca agtgttggat agcaaaacac caaaaccaga agacattgat gaggaggatg
      781 atgatgttcc agatctcgta gaaaattttg atgaggcatc aaagaatgaa gctaactaaa
      841 attttttctg gtttttggaa gctggcatgg actagattta acaaatcagc tatgtggttc
      901 caaagtttta cagacacgga gaacatcagc tgttactagt tcagtaatat aaatattttg
      961 tatattaata atgctgtttg ttcagcattt ttcgatcatt tgattttgca ttttgcactt
     1021 cctcccagga tctattcttt tggtcaaaat acgaagtgtt ggtgcagttt gagggtgttt
     1081 tgggttttga ttcttggttt ttttgttttg ttttttgttg gggtattttt agtgtgtgta
     1141 tgtgtatgta tgcgtgtggg tatgtgtgta tacagtggag agcaaattgg aaagcagttt
     1201 tatttatcct cctccttacc ccagtagaaa taaaacaaat ctttacattt gttacttttt
     1261 attttttcta atgatgcaca gaattaatga aaagtgagta tcttggattt caaatcagga
     1321 gattttaccc ttggaggttt ggttttaatt tgcttcgtta acatatttct catacatttt
     1381 tctgggttta aaatgtcttg agatattttg tcaccagctt catgctggca taatgggtag
     1441 catatctttg gtgcagttgc cttggattca cttacttagg attcacttac ctagttagac
     1501 ccagaggaat ttcttctact agtttttgtc ctaaatgcct tgttttctcc ccttttggtc
     1561 tctaaatggc ccggttagcc tttagtaatg ctgttcctca tcttccatct agcctgagaa
     1621 ggatgttctc catatagagt taagtgagtg cctaatccct ctttttgtaa gattgttccc
     1681 acatcttgag gaacaacagc tccatcttca acttcttatt cttttgattt tacagtttgg
     1741 tagatttcaa actggaatag ctagcatgtg cttgctaaat aattttatgc cagccttatc
     1801 ctgtatccca gctgttctta atagcaggtg caaaaatgcc tctttttcag caaggttgaa
     1861 attgggaatg tcctgttgaa tcagaaaaaa tgggccatag actcattccc cagcacaaat
     1921 gggcattcta tgaaatggta ctggccccag gaggatttct tcaaccactc ctctactctt
     1981 ggccttgaac ctacctctgg attggatctt actattgtag ctgctcatag catcctcctg
     2041 catgcttaga gtaatgcttt gggggaacac tggtaaaaca cagtatttat tttttcacct
     2101 cctttcagag gacttggagg taagttgcat tcattcattg acgcttccct cttgccgtct
     2161 tataaaagct tgcactttgt tatatcagca tttgttatag ccaatattta aggataagat
     2221 ttagaagtct atcatggccc atcatcaaac tatggcttaa ccttgcagca tatcaacttt
     2281 tgtttcaagc tagatatctt tatttgatat ctctagtgca agaccaacat atcaagagat
     2341 ctatagacac gaaggcaaag gtcttgtatt tttttccatc cagacacctc aatttatttt
     2401 atacatttgt tgatttttcc tgttatgttt tatatatatg gagttaacta caaaataaaa
     2461 taacagtaat aaaataacaa aagaggataa tatttcctct tgtgcttctc tttttgttgt
     2521 ctacagaatt tacttctttt gtattttccc tctcctcctc acccccaaat gaatttcaac
     2581 ctagtctttt tttgaaatta tgcttcatcc attgttagat cagtagctct acatggtcta
     2641 catagtccag aatgctgttc ctctgactgt ccccaaaggg cacattgtgg ggcagagaga
     2701 gttaagggga cttcaagtgg ttagggaaac ttaagaggta gtatacgaaa tgggcagaag
     2761 aagcactcat gtggaattca ggagaattgg atcctagtcc aaactctggc attaaccgta
     2821 tgaccttggg caggtcatct aacctaatga ctttgaaatt catcatcagt caaatgagat
     2881 gtttccaaat caacatttct tctgctcctg tagttctgtg aatctcattt ctgaaaatcc
     2941 tcaaggaggt attttatcat tttttcagaa atgtcttttt atcaatactc ataaaagttc
     3001 tttgtgtgta tatacttctt cctcttttac attttgatca tattttaact gctcacccgg
     3061 aggagctctg gtcagtattt ccttttatcc tgttgacaat aactcttaat ggctgccctc
     3121 tcttgtatac aatgagccaa tactcttttt tgttttatat tttcatacct tcccttttcc
     3181 tggacaaagc atatcgagat cctgactcaa cccaaagaaa tgttcctgcc ttcagagtga
     3241 gtaggcatag agtacagtag tacagcatct ttatttcaag cccaggatgt ctggaagcaa
     3301 gcataaaagc agcagtgatg tagccagtac tgctaagaaa cgccaagcaa taacaatgga
     3361 aacaaaaagt gaaaataatt gagtggagca aggcgaaaat atggtagatg ttgctcattc
     3421 ttaaaacgtg aattgttcaa ccattggcac gtttctaaag aacaaggaca agatcatgga
     3481 acatgtgaag ttagctgtgc cgatgatgtc gacaacaata tcgaagaagc gtgtaaaagt
     3541 gatggaggag atggagaaac ttctcagtat gtggattcag gatcagcttc agcactgagt
     3601 cccactaagt ttaatgctaa ttcaagagaa agccaaaaac cttcatgaag acttaaaaca
     3661 cagtgaagaa tcagagggtg catcttttaa tgccagccat ggccggtttc aagggttcaa
     3721 ggctagagcc aaccttcgca atgtaaaagt aagcagtgag acagcgagtg cagatatggt
     3781 agctgcctga gagtttcatg aaacactttg agaaattatt tatgaaggca tatattgact
     3841 caagcaggtt tttgggtttt ttttttccgg acgcgcaggc tcagcggcca tggctcacgg
     3901 gcccagccgc tccatggcat gtgggatctt cccggaccgg ggcatgagcc cgtgtcccct
     3961 gcatcggcag gtggactctc aaccactgca ccaccaggga agccctcaag caggttttta
     4021 atgtggatga aacagggctg tactggaaga ggatgccaga ccgaagttac atcagtaagg
     4081 aggaaaagtt gatgccaggc tataaagcag caaaggatag gctaacactg ttgtttggtg
     4141 acaatgcttc tggtaatatg aagctgaagc ctctcttagt ttatcattca gagaacccaa
     4201 gagcccttaa aaacatagcc aaggactctc atcctgttgt gtagaagagt aaccccaaag
     4261 cctgtgttac acaggccatt ttccaggact ggtttttcca ccactttttc cctgaggtag
     4321 agaaatactt cttggagaag gatgtcccat tcaacattgt tttgctgctc aacaatgctc
     4381 cgggccaccc cccattcatg gacgactttc atcccagcat caaagcagtg catctgccac
     4441 cgaatattat gttactcatc caacctatgg accagggagt tatagcgact ttcaagaaat
     4501 atttacatca cacttttcag gcagtaaaga cgagtgacaa atcaggaaca accttgcgac
     4561 aattttggaa ggactgccat ctacaaggcc ttaaaaaaca ttgactttgc ttggtgtgag
     4621 gttacggctg tcaccatgaa tggggtttgg aagaatattt gcctgcagtt tgttcaccat
     4681 tttcatggat ttggaaggtg gatgaggaat ccaaagaggt cttctgcaac ttagtgaccc
     4741 tcagtgagaa actggagcta gatctgcaag aagactactt cactgaactc cttgctgtgc
     4801 aacacaaaga gcttactaat gaagacctga tggaattgga ggcccacaga aaggatgaag
     4861 agagacaaga ggaagaagta actgaagaac caaagagagt catgatgcag gaaatggcaa
     4921 ggggattttc tttatttgag gaggcactgt tagtttttga ggcataggac tgaaagaaga
     4981 acagtgcaca aaggttgcag cagccgatcg gaatggaatc cagtgctact gtgtcatcta
     5041 tgaaaagaaa gagcgagcta ctacccagac atcactggat catttttgca agaggataga
     5101 tagaattgaa tccagcaagg aaccagaacc tgtgccatca gcgtcaggcg tgagtgaaat
     5161 tgcagcttgc cttccgtgtc ctgttgctga cgatccttca gctctaccat ctcccagctc
     5221 ctctccctcc tccagtcagt aactcttctt gcctgttcac ccaatgccag cccctgtatg
     5281 ccaactgttg tactggacta ctgtactttt caaggtactg tactgtaaga ttaaaaatgt
     5341 ttt
//
LOCUS       XM_032648317           13261 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 26B (KIF26B), mRNA.
ACCESSION   XM_032648317
VERSION     XM_032648317.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-471               VOSU01000011.1     159767112-159767582
            472-873             VOSU01000011.1     159768407-159768808
            874-1410            VOSU01000011.1     159953310-159953846
            1411-1577           VOSU01000011.1     159996586-159996752
            1578-1761           VOSU01000011.1     160106052-160106235
            1762-1968           VOSU01000011.1     160161898-160162104
            1969-2062           VOSU01000011.1     160167411-160167504
            2063-2325           VOSU01000011.1     160168700-160168962
            2326-2509           VOSU01000011.1     160171747-160171930
            2510-2669           VOSU01000011.1     160193850-160194009
            2670-2832           VOSU01000011.1     160231570-160231732
            2833-6250           VOSU01000011.1     160232743-160236160
            6251-6453           VOSU01000011.1     160250244-160250446
            6454-6456           VOSU01000011.1     160250485-160250487
            6457-6480           VOSU01000011.1     160250885-160250908
            6481-6604           VOSU01000011.1     160250911-160251034
            6605-13261          VOSU01000011.1     160254870-160261526
FEATURES             Location/Qualifiers
     source          1..13261
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..13261
                     /gene="KIF26B"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 long SRA reads, 11 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761891"
     CDS             409..6753
                     /gene="KIF26B"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: kinesin-like protein
                     KIF26B"
                     /protein_id="XP_032504208.1"
                     /db_xref="GeneID:116761891"
                     /translation="MNSVAGNKERLAVSTRGKKYGVNEVCSPTKPAAPFSPESWYRKA
                     YEESRAGSRPTPEGAGSALGSSGTPSPGSGTSSPSSFTGSPGPASPGIGTSSPGSLGG
                     SPGFGTGSPGSGSGGGSSPGSDRGVWCENCNARLVELKRQALKLLLPGPFPGKDAAFS
                     AVIHDKLQVPNTIRKAWNDRDNRCDICATHLNQLKQEAIQMVLTLEQAAGSEHFDGSP
                     GSPPALSNIPTPVGSRHVGGLQQPRDWAFVPTSYASSNYTALITNKHSSKPNSLGVSN
                     GVEKKSGSPTHQAKVSLQMATSPSNGNILNSVAIQAHQYLDGTWSLSRTNGVTLYPYQ
                     ISQLMTEPGREGLTEAALNRYNADKPSACSVPASQASCVASETSAGTSVAASFFARAA
                     QKLNLSSKKKKHRPSTPSVAEPPLFATSFSGILQTSPPPAPPCLLRAVNKVKDTPGLG
                     KVKVMLRICSTLARDTSESSSFLKVDPRKKQITLYDPLTCGGLNAFQKRGNQVPPKMF
                     AFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN
                     LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATGSLQDGQ
                     SPGVYLCEDPICGTQLQNQSELRAPTAEKAAFFLDAAITSRRGSQQDCNEDDLRNSHM
                     LFTLHIYQYRMEKSGKGGMSGGRSRLHLIDLGSCVKALSKNREGGSGLCLSLSALGNV
                     ILALVNGSKHIPYKESKLTMLLRESLGNVNCRTTMIAHISAAAGNYAETLSTIQLASR
                     VLRMKKKKTKYTSSSSGGESSCEEGRMRRPTQLRPFHARAAVESDFPIPHLSSDPDYS
                     SSSEQSCDTVIYIGPNGTALSDKELTDNEGPPDFVPIVPALQKAARGDSRSTEAGEAA
                     ASKSERDCLKCNTFAELQERLDCIDGSEESSTFPFEELPAQFGAQPASKSVPLSQVAG
                     ASPLCESDKEDDGSDGQLTAREGSEPPGSKVQGNHSPVPAAWLTNSPTPASPRSIPGS
                     SSQHGSSQLVQSPSLQSSRESLNSCGFVEGKPRPMGSPRLGIASLSKTSEYKPASSPS
                     HRCKVYTQKGVLPSPAPLPTFSKDAGVVSSESLLQPEVRTPPVGMSPQVLKKSMSTGS
                     EGFPETPVDAEHQAAPSADAKREIRSTTMVTVQQPLELNGEDELVFTLVEELTISGVL
                     GGGRPTSIISFNSDCSVQALASGSRPVSIIGSVSEDLECYSNVAPVSEVSITQFLPLP
                     KLNLDEKARETGSRRSSISSWLSEMSTGSDSEPPCHSFIAQTCFGHGEAMADPPASEF
                     VSGMQNTAVVCREKPKEGPDSLLILSEMGDDSFNKATPIKGCKISTLGKAMVTISNTA
                     SLSNCEGYIPMKTNITVYPCIAVSPRNVQEPEASLATVSSVPKAARSQESKESGAKKE
                     MKFEDPWLKREEEVKKENAYPHEAGMRHETAPGPPKPEARAEQDRKASPSDGLSSSSG
                     EVSASPVADNFRRVVDGCETALPSVAAQSPVHLNKSLKSSSLPRAFQKASRQEEPDSL
                     FSHCPAETNGIGPASSTQPSKATLERKVASPKHCVLARPKGTPPLPPVRKSSLDQKNR
                     ASPQHSSCSSNSSSPLNQPAPFAASFPDEPSGKTKDAGGSCSSKLFGAKLEQLASRTN
                     SLGRTTVSHYECLSLERAESLSSVSSRLHAGKDSTMPRTGRSPGRSAGASPTNPGPAQ
                     SAGASPKASQSKISAVSKLLLASPKARSLSTSTTKTLSFSTKSLPQAVGQSSGPPPGG
                     KHMSWSTQSLSRSRGSGLASKLPLRAVNGRISELLQGGAGPRGPPGRAGPEAEERAAT
                     ADERPPPAVPLPSPYSKITPPRRPHRCSSGHGSDNSSVLSGELPPAMGKTALFYHSGG
                     SSGYESMMRDSEATGSASSAQDSMSENSSSVGGRCRSLKAPKKRANSGSQRRRLIPAL
                     SLDTPSPVRKPANSAGVRWVDGPLRSTQRGLGEPFEIKVYEIDDVERLQRRRGGSSKE
                     VMCFNAKAKYLEHRQQRIAEVRAKYEWLMKELETTKQYLMLDPNKWLSEFDLEQVLEL
                     DSLEYLEALECVTERLESRVNFCKAHLMMITCFDITSRRR"
     misc_feature    1759..2805
                     /gene="KIF26B"
                     /note="Kinesin motor domain; Region: KISc; cd00106"
                     /db_xref="CDD:276812"
     misc_feature    order(1777..1779,1783..1788,2047..2073,2542..2544)
                     /gene="KIF26B"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:276812"
     misc_feature    order(2668..2670,2677..2679,2686..2688)
                     /gene="KIF26B"
                     /note="microtubule interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276812"
     misc_feature    5512..>6390
                     /gene="KIF26B"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
ORIGIN      
        1 gccggctcgc cggcggaggc gaggcggggg cccgcccacc ttgtctgcag ctgccgtgtg
       61 ccccgattgt actcgtcttt tccctcgtgg aggaaaacgg actcactagg ctgaggagaa
      121 cgccaattat ctggatgtga ccgtgaaaag agaacgtgtg gttggagaag gcagaagagg
      181 aggaaacgca ttatttgaag agaagaataa accaggcatt gcaaccctcc cgcaaattag
      241 tgctgttact tatgaggtcc atctgctttt atcttcccgc ccccttcagt taagaaacct
      301 tgagggccaa gagacagccc cctacaactg gacacccttc tgggttggaa gaccttttgg
      361 atgtagcgtt ggtggaacat ttagacactc tcctctggaa aagccaccat gaattcggta
      421 gctgggaata aagagaggct tgcagtctcc accaggggca agaaatacgg ggtgaatgaa
      481 gtctgctcgc ccaccaagcc cgcggcgccc ttctccccgg aaagctggta ccggaaagca
      541 tacgaagagt cgcgcgccgg gagccgcccc actcccgagg gcgcgggctc ggcgcttggc
      601 tcgtcgggga cgccgtcccc cggctcgggc acctcgtccc cgagctcctt cacgggctcc
      661 ccgggccccg cctccccggg cattggcacc agctcgcctg gctccctggg cggctcgcca
      721 ggtttcggca cgggctcccc gggctcgggc agcggcggcg gctcctcccc cggatcggac
      781 cgcggcgtct ggtgcgagaa ttgcaacgcc cgcctggtgg agctgaagag gcaggctctg
      841 aagctgctcc tcccggggcc ctttcccggc aaggacgctg ctttctcggc tgtgattcac
      901 gacaagctcc aggtccccaa taccatccgg aaggcatgga atgacaggga caaccgctgt
      961 gacatttgtg ccacacacct gaaccagctg aagcaggagg ccattcagat ggtgctgacc
     1021 ctggaacagg cggctggcag tgagcacttc gatggctcac ctggctcgcc cccagccctc
     1081 tccaacatcc ccactccggt ggggtcccgg cacgtggggg ggctccagca gcccagggat
     1141 tgggcctttg tgcccacctc ctatgcctcc tccaactaca cagccctcat caccaataag
     1201 catagcagca aacccaacag cctcggggtc agcaatgggg tggagaagaa gagtgggtct
     1261 ccaacccacc aggccaaggt cagcctccag atggccacca gccccagcaa tgggaatatc
     1321 ctcaactcag tggccatcca ggctcaccag tacctggatg gcacctggtc cctgtcgaga
     1381 accaacgggg tcaccctcta cccctaccag atctcccagc tgatgacaga gcctggccgg
     1441 gagggcctga cagaggcggc gctgaatcgc tacaatgcag acaagccttc ggcctgcagc
     1501 gtcccggcct cgcaagcctc ctgcgtggcc agcgagacct ccgcgggcac ctcggtggcc
     1561 gcgtccttct tcgccagagc tgcccagaag ttaaatctat cttctaaaaa gaagaaacat
     1621 cggccttcca ctccttctgt tgccgagcca cctctctttg ccaccagctt cagcgggatt
     1681 ctgcagactt ccccgccccc tgccccgccc tgcctgctga gggccgtcaa caaggtgaag
     1741 gacaccccgg gcctgggcaa ggtgaaagtc atgcttcgca tttgttccac gttggctcgc
     1801 gatacctcgg aatccagctc tttcttaaag gtggacccac gaaagaagca gatcaccttg
     1861 tatgaccccc tgacatgtgg aggtctaaat gccttccaaa agagagggaa ccaagttcct
     1921 cctaagatgt ttgcctttga tgcggttttt ccacaagatg cttctcaggc ggaagtgtgt
     1981 gctggaaccg tggcagaggt gatccagtct gtggtcaacg gggcggatgg ctgtgtgttc
     2041 tgtttcggcc acgccaagct gggaaaatcc tacaccatga tcggaaaaga cgattccatg
     2101 cagaatcttg gcatcatccc ctgtgccatc tcttggctct tcaagctgat aaatgaacgg
     2161 aaagaaaaga ccggagcccg tttctcagtg cggatctcag ccgtggaggt gtggggcaaa
     2221 gaagagaacc ttcgggacct gctgtcggag gtggccacgg gcagcctgca ggacggccag
     2281 tctccgggcg tgtacctgtg cgaggacccc atctgtggca cgcagctgca gaaccagagt
     2341 gagctgcggg cgcccactgc ggagaaggcc gccttcttcc tggatgctgc cataacctcc
     2401 cggcggggca gccagcagga ctgcaacgag gatgacctcc gcaactccca catgctcttc
     2461 acgctgcaca tctaccagta ccgcatggag aaaagcggca aggggggaat gtctggaggc
     2521 cgcagccgtc tgcacctcat tgatcttggc agctgtgtga aagctcttag caaaaatcgg
     2581 gagggaggct cagggctgtg cctctccctg tctgctctgg gcaatgtcat cctggctctc
     2641 gtcaatggca gcaaacacat cccatacaaa gaaagcaagc tcaccatgct actgcgggag
     2701 tccctgggga acgtgaactg ccgcacgacc atgatcgctc acatctcggc cgccgccggg
     2761 aactatgccg aaaccctgtc caccatccag cttgcctcga gagtgttgag gatgaagaaa
     2821 aagaaaacga agtacacgtc gagctcctcc gggggagaga gctcctgtga ggaaggcaga
     2881 atgcgcaggc ccacccagct gagacccttc cacgccaggg ccgccgtgga gtcggacttc
     2941 ccgatccctc acctgtccag cgaccccgac tactcctcca gcagcgagca gtcctgcgac
     3001 acggtcatct acattgggcc aaatggcacg gccctctctg acaaggagct caccgacaac
     3061 gaggggcctc cagattttgt ccctatcgtg ccggccctgc agaaggcggc caggggtgac
     3121 agccggtcca cggaggccgg agaggccgcg gccagcaaat cggaaaggga ctgcttgaag
     3181 tgcaacacgt tcgccgagct gcaggagagg ctagattgca ttgacggcag cgaggagtcc
     3241 agcacgttcc ctttcgaaga gctgccggcc cagtttgggg cacagcccgc gagcaagagt
     3301 gtcccgctaa gccaagtagc tggggcaagc ccactctgtg agtctgataa ggaagatgat
     3361 gggtcagatg gccagctgac agccagagaa ggcagtgagc ccccgggctc caaggtgcag
     3421 gggaatcact ccccggtccc tgctgcatgg ctcaccaaca gccccacccc tgcctcaccc
     3481 agaagcatcc cgggcagcag cagccagcac ggttcttccc agcttgtgca gagccccagc
     3541 ctccagagca gccgggaaag cctgaactcc tgtggctttg tagaaggcaa gcccaggcct
     3601 atgggctccc ccaggctggg catcgccagc ctgtccaaga cctcagagta caagccggcc
     3661 agctctcctt cccacaggtg caaagtctac acccagaagg gtgtcctgcc ttctcccgcc
     3721 cccctgccca ccttcagcaa ggatgcgggc gtggtatcta gtgagtccct gctgcagccc
     3781 gaggtacgta cccccccggt cggaatgagc ccccaggttt tgaagaaatc catgtctacc
     3841 gggagtgaag ggttcccaga aacccctgtg gacgccgaac atcaggcagc cccttctgca
     3901 gatgccaaga gggagatacg gagcaccacg atggtgacgg tgcagcagcc cctggagctg
     3961 aacggtgaag acgagctggt gttcacgctg gtggaggagc tgaccatcag cggggtcctg
     4021 ggcggcggcc gccccaccag catcatcagc ttcaacagcg actgctcggt gcaggccttg
     4081 gcctcgggct ccaggcccgt cagcatcatc ggcagcgtca gcgaggacct cgagtgctac
     4141 tcaaacgtgg ctcccgtctc cgaggtcagc atcacgcagt tcttgcccct cccgaaactc
     4201 aacctggatg agaaggcccg ggagacaggg agcaggcgtt cctccatcag ctcctggctg
     4261 agtgagatga gcacaggcag tgacagcgag ccgccctgcc acagtttcat agcccagacg
     4321 tgtttcgggc acggggaagc aatggcagat cctccggcct cggagttcgt cagcggcatg
     4381 cagaacaccg ctgtggtgtg ccgagagaaa cccaaggagg gccccgacag tttgctcatc
     4441 ttgtcggaaa tgggggacga ctccttcaac aaagcaaccc ccatcaaagg ctgcaagata
     4501 tccacgctgg gcaaagccat ggtcaccatc tctaatacgg ccagcctgag caactgcgaa
     4561 gggtacatcc ccatgaagac caacattacg gtttacccct gcatcgccgt gagcccccgg
     4621 aacgtccaag agcccgaggc gtcccttgcc accgtcagct cagtccccaa agcagcccgg
     4681 tctcaggaga gcaaggaaag tggtgcaaag aaagagatga aatttgagga cccctggctg
     4741 aaacgagaag aggaggtaaa aaaagagaat gcctatcccc acgaagcagg gatgaggcac
     4801 gagactgccc caggcccccc aaagcccgag gccagagcgg aacaggacag gaaggccagc
     4861 cccagcgacg ggctcagcag cagcagcggt gaggtatctg cctcccccgt ggccgacaac
     4921 ttcaggaggg ttgtggacgg ctgtgagacg gccctgccca gtgtggctgc ccagagccct
     4981 gtgcatctca acaaaagcct gaagtccagc agccttccca gggcttttca gaaagccagc
     5041 cggcaggagg aaccggacag cctcttctcc cactgccctg ccgagaccaa cggcatcggc
     5101 ccggcttcca gcacccagcc ctccaaggcc accctggaga ggaaggtggc gtcacccaag
     5161 cactgtgtcc tggctcggcc caaagggact cccccgctgc cccctgtccg aaagtccagc
     5221 ttggaccaga agaaccgggc cagcccccag cacagctcct gcagcagcaa ctccagcagc
     5281 cccttgaacc aaccggcgcc cttcgcggcc agcttcccgg acgagcccag cggcaagacg
     5341 aaggatgccg gcggcagctg cagcagcaag ctcttcggtg ccaaactgga gcagctggcc
     5401 agcaggacca actctctcgg caggacaaca gtcagccact acgaatgcct ctcgctggag
     5461 agggccgaga gcctgtcctc cgtgagctcc aggctgcacg cggggaagga cagcaccatg
     5521 ccccgcacgg ggaggagccc gggccgcagc gccggggcct cgcccaccaa cccgggaccc
     5581 gcgcagtcgg ccggggcctc gcccaaggcc agccagtcca agatctccgc cgtgagcaag
     5641 ctgctcctgg ccagccccaa ggcccgcagc ctgtccacct ccaccaccaa gaccctgagc
     5701 ttctccacca agtccctgcc gcaggcggtg ggccagagct ccggcccgcc ccccggcggg
     5761 aagcacatgt cctggtccac ccaatcgctg agccggagcc ggggctcggg cctggcgtcc
     5821 aagctgccgc tgcgggcggt gaacggacgc atctcggagc tgctgcaggg cggcgcgggg
     5881 ccccgggggc cgccggggcg cgcggggccc gaggcggagg agcgcgcggc caccgccgac
     5941 gagcgcccgc cacccgccgt cccgctgccc tcgccctaca gcaagatcac gccgccgcgc
     6001 aggccccacc gctgcagcag cggccacggc agcgacaaca gcagcgtgct gagcggcgag
     6061 ctgccgcctg ccatgggcaa gacggcgctc ttctaccaca gcggcggcag cagcggctac
     6121 gagagcatga tgcgcgacag cgaggccacc ggcagcgcgt cgtccgccca ggactccatg
     6181 agcgagaaca gcagctccgt gggcgggcgc tgccgcagcc tcaaagcccc gaagaagcgt
     6241 gccaactcag gttcccagag acggaggctc atcccggcgc tgtcccttga caccccctcc
     6301 cctgtgagga aaccggccaa cagcgcaggg gtccgttggg tggacggccc cttgcgcagc
     6361 acccagaggg gcctcgggga accttttgag attaaagtct atgaaatcga cgacgtggag
     6421 cgactgcagc ggcgacgagg gggcagcagc aaggaggtca tgtgcttcaa tgcaaaagct
     6481 aaatacctgg agcatcgcca gcagagaatt gccgaggtcc gagccaagta cgagtggcta
     6541 atgaaggagc tggagacgac gaaacagtat ctgatgctgg atcccaacaa gtggctcagc
     6601 gaatttgact tggagcaggt tctggagctg gattccctgg agtacctgga agcgctggag
     6661 tgcgtgacgg agcgcctgga gagccgcgtc aacttctgca aggcgcacct catgatgatc
     6721 acctgcttcg acatcacctc ccggcgccgc tgacgggagc cgccgcccgg ccagccctcg
     6781 ctccctatcc gcaggcagct gcgctcggcg ggccctcagt gctggccgcg ctcagtgacc
     6841 acggaaggag gacgaaggtc ggtggcaagt ccggagtgag cgtggagcag aaggtgattt
     6901 ttcttttgtt ttctgtagga aaggtgcaaa taccaaacac gcaggagaga agaaaatgat
     6961 gggaaaccca agggacgtgg aaacccccgt gagactgaaa aagcactttg aggaacttta
     7021 aagaacttgt ttgtacataa gaaatgatgg caaaagagac ctcactcttc tcctggtttg
     7081 tgagaaaagg cgagggtgga cgtgggattg ctgtggaaag tgaaaacaaa acaagttact
     7141 ccgaatgact gatgaagtgc cttgcaaatc tttgttatta tccaaacatt tatgttcata
     7201 ctttcttgtg tacagatggt gctagtcaag atgaagacaa caaaacgaac aaaaaagaaa
     7261 atcagacaca tttttgcaat gtatttacag ctcgttttct cttggtgttt tatcctatct
     7321 ctgacttgct gtttctaagt aagttgtgtt tgtagagcta tttcctaatc ggtatggcat
     7381 atgaataaat gttaactgtc tgctatggtt ctgctgggaa ggccactcaa acagaagata
     7441 gagacttccg ggcacaagcc agtgtgtttc caaagaaggt tggaacagca ggtgatgctc
     7501 aatgccagct cctacgagtg gcagtgtcag cgggcagact cggaggtcga tcatggagca
     7561 ggtgcacgtg agctggagag aaaagagagg agaaagggct gcgtctctag ggggaaagga
     7621 gcctctgtga cctgggcccc gcttaccctt tgggtgggat gtttgttccg aatagtttcc
     7681 cctcacacat cctgaacaca tatactagtt cctttaccca cgaatccagg gttttcatgg
     7741 ccctcataac acttttcata ttcattttta ttccaaagac tctggattga gaccttgaac
     7801 cgattcagca gagccatata tttttgctcc ctagttttgc aaatttatta gagcagagga
     7861 tttttcccag tttggagacc ttcttgggct tgtagatgct cagagacccc aacagtattg
     7921 gtccagaaca aggatggatg tgaggttgca caacttttct cttgcccagg gtgctgctta
     7981 aatgcaagaa gtcccagtcc tcgtgtggac caaagcctcc atcccaagaa acaactaggc
     8041 ttggccactc aaccttgaca cctgaaggca gagaaagttt tcctgtcaca catcacacac
     8101 ctgtagcaag gcagggcaca gagtttcatg catatggatg tacagggctt gactttggac
     8161 ctcattctca aattgagatg ttcatccctg ccacaattcc cttagggacc attataccca
     8221 ttttagtgat ggaaacccag ggattgtcta ataacagctg tggaacagca gggcgttcgc
     8281 ccaccttcca ggtcagggcc ctctcccagg cccctgcagc ctgcccactg atagcggtgc
     8341 ccagggtttt ccctgttctt tttgccctca aatgcagcat atctccatga gcctatttcc
     8401 aggtgaggca gtcctggcta accagctcct cagccccaac tgctccccaa ggaaaaggaa
     8461 cctttgcatt tctttgacca tgctcttcag gacacgtgta gcccagcaca gctcagctga
     8521 actcagtaag tgggaaacat agtcttgtga gcttcatagt accagtcctt tactggtcag
     8581 aacggggcac agatggcccc attagctttg tttggcaagt cagcccccta gactggaagc
     8641 cagctctgtg gatgacaagt ctggctctgt gtttggttag agcgcgctcc tatgcaaagg
     8701 tgcacataga agctgcactc ccatccgata gctgaaacgg gctataatac ggtgaaaagt
     8761 tactccagag cggatcattt ccccctctag tttaacaagt gtgtctgtcc ccttggaagg
     8821 caggggtccc acaccctaac ctcattctgc agggcagccc catggctctg ggtgcacctc
     8881 tggtctcagc acttgtgtta atggccttgt tcaacagcag cgtaatggaa gcttctggac
     8941 cccaaaggat gccaatctgt tgagtttgtt tggattttcc attcggcacc tctttggttg
     9001 ctggtttgat atacaccatt tcatgaaaag cctttaactg aggaattgtc acaggtgagt
     9061 atcctagtct ttgctggaaa caaacgcatt tgattagtaa tcagtgtcct tagctttcgc
     9121 cctggccata tctttcccac aggttacctc actgtgctga cttccttagc aggccagcac
     9181 tggggccttc gtgcctttcc tggagtgaga ctaagcggaa acatctacag aaattaaagt
     9241 cttgatcagt ggaaactttc ctaggggagt ggccttccgc ttgcctcctg cctaaacctg
     9301 ctttatatgt ttgtagcaac tttatgagat agccaaaggg ctgaatgaga ccaggagctc
     9361 tcttaccaag tcagattggc ctcgcaagat gccacaccgt ggagcttctc acaggatgct
     9421 tttggccatg gtgtaggaga acaacttggc atggaggttg tccattggct ttttccctta
     9481 cttttctttt cctttctttt ctaacgtaag taagctacaa acatcttaac acaccaagta
     9541 tttgtgaacc atgtgaagac agcatgattt ttatgctata atgtgcttct gcctggttct
     9601 acctataagt tgattgtaca gctggtcagc tgttctgtag cagttctaat aacggaagaa
     9661 cacctcattc aatggccagg tgtgaggcag gtcgaggtct ccttgtggtt ttggtgacag
     9721 ataacctagg aaggcaaagg gaatgtcaaa gaacccatta ttccatttta ttatccacaa
     9781 atgaaaggac cagaaaaata tttatttgaa attaacgttt agatgtggaa gccttaattc
     9841 tttgtctgaa atctgttccc ctctccaaat agtttagtgc gaggtggaag caaaactcag
     9901 agcccagaag tggaatagtg atgtttccgg ggagtgaatc catattgcat ttcatgaggg
     9961 gtgtttcatg ttgccacaga gtgagagttt gctttatcct gggctctcaa gccccacctg
    10021 agagctgcaa cttttgatat tcttgtcctt gaattcccct ctacatcatg gggaagctgt
    10081 caccaacttt catctcttcc agatttgaaa tcgaaacatc ctgtctgttg ttttatctgc
    10141 agttgctatt ccgaaggtag ggagcttgag atgtaaatgc agaggttggt cctgtgttga
    10201 ctcaggtggg gctcatacaa gggaccccat gctggggaga ggagagagct gggataaaat
    10261 gccatgcagc ccagagtggg gaattcggca ggcaggaatc tcaccatttg tcataaatta
    10321 gtcttaagct tggagtcttg tgttcctgga aggtggtggt gactacatca tagccacaaa
    10381 acccatccag ggcagtggtt caaaaagtct gacacgaaca catatatatc ttgtgccggt
    10441 tctcggattt ctgttcgtgt taagcaagag cccttttttg ggcttctgat tctgaggctg
    10501 atcatgaatc ttggttaatc catcagcctt ttaggtgttc ctattcaaaa gcagctgtct
    10561 gatctgggtt tcttgggata gacgcagggc ttgcaagagc ccaagcgttt attaccctgg
    10621 ctctacacac agttgcctgt gtcattggcc actgctgatc tgtaatcaag gctcccacca
    10681 taaataatga tgtcgtgaat gtttttaaat ccctattcca agaagggttt gggctgtaac
    10741 agaaattact aaagatgagt taatttcaaa attgaaacca gaattcatga atttattcag
    10801 tgtaaaattt tttttggggg ggcagtagtg ggtggacagg taatagaata tagtgttcct
    10861 ttggattata atctctcttt ctcctcctcc agcaaagatc tgtcaacatt tgtgggtaaa
    10921 aactcacaaa ttgtgtccct tagcaatctt cctgacaaaa tacatatcta ttccgagctg
    10981 ctcgtcattt ccagataaca gcataattcc aatccaggag aagctcatct tctcagaaga
    11041 agtttttgca aagttttaga agctgcttat ccatccctaa acaatgcatt ctgcattggg
    11101 gtggccctgc tcggaaccag agatgatgcc ataatagcgg acatacttga agtgcttgag
    11161 gtggcatcaa acctttagtg catataatca atattctcta gatgcggttc ccaacgtcca
    11221 tgtgtgtagg gcgagtgctg aaatcctggc actcacacat ctattttatg tagatgtaga
    11281 aatcaccttc gaaactcaaa aggctcactg tttcattccc cgtactgcta accaacaccc
    11341 cacactgtca tattcagttt atgaagaagt tataatttat ttgtaaactc aggatgttgt
    11401 tttgtggcgc ctcgtgtttt ataatttatt tatacaccgt ggttggaaat gctatccaag
    11461 tgctatgcat caaagtgtaa gtctggtgga tctgcctatg gctggttttt ctcctcactg
    11521 taacaagcgc tgttaacaga gacacaggca gcggggagga aagagaaata aaacaggaaa
    11581 acagggatta ggatccaatc ctcaaagtcc agggcttagt tcaaaaccta atttgtttct
    11641 aaagtaagta gctgaaaagg aaaagatcgt ttccttttga atttgatgat aacggtcttg
    11701 gaaatcagcc tccacaggcc tgagtgaagg aggatccagc ctcctcctgc tggttcaaca
    11761 ctaaatttct gaaaattgca gacagtatta ggttcctaca tttccctaag acgtcccacc
    11821 tcccacccct gctgttactg aaggggtctg gaagaggaaa ctgaagttcc ttaccttgga
    11881 tatatatagt acctgttttt tctggacaaa ccaaagcact ttagtgagtc ttacaaccca
    11941 taatacttaa agcgtcttgt cccctcactg gatccctgag aggccaggag gggctggggt
    12001 cagtagtctc atttgagagg cagctaaacc taggagaaaa agccttgagc tcagagtaag
    12061 gaaaccaggc tccaggcctg ctttcctcac tcgctatgca accttgggca agtcgcttca
    12121 cattgctggg cctcaggctc cccgatggaa ggttgggggt cataatagct gcccttctgg
    12181 gagagtgtaa agagaaaatg gtatagttga tgggaagtgc tttgaagaaa tgaaagctct
    12241 gttcgggagc tggggataat catattagat gaagaaactg aagtcaatag ccaatgattg
    12301 gcccaagttc acagagtagt tttatagcag aactgggatc tgagtccggc atcttggact
    12361 cttcccatga ggtgctgttg caccaggtct gtgtggatat gtggacacac accacaccga
    12421 tgtactgacg tgtgtgtgca cgggggtgta tacggatgca tgtgtacaga aggtatgtga
    12481 catggtggaa gaacatagaa cagaaaacct gcgttctaac tccagttttg acaatagtcc
    12541 tatggccttg gatatattac ccagcgtttc tggaacacag ttttctaatc tgtaaaagga
    12601 gaacagtgtg ctaaatgatc tttgtggttc cttcagctct agtcatgtat gtatgtgtat
    12661 ataaatatgc taatctgtag aaatgggcca atttgaaaat tggagacaag acctgcccaa
    12721 gtgcatttat tgtgtcggaa acagcgaatt cataaacaag ttcataaaat cttactttaa
    12781 attcaatggt ggtatttaat gtcattgttt taaattcact atttggataa aagattggtg
    12841 ccattttaaa aattaagttc ttagcttaca agtgtttgct gttaaaaact tttaataaaa
    12901 ttcatttgtt aaagtcagaa attcaactat tctgtacttg ggtaggtccc aacagcctat
    12961 ttgcaaacag gctggttttg tgtatgggcc ttcgcatagc gatataagtt agctgttggc
    13021 ttgatcatga tacatgtgag caggctacct ggagaacagt ctggaaaaga aagttatagt
    13081 tcttaaaacc tggtgacatg acttcattaa gctgtgtgcc atttccagtg tgaagacatt
    13141 gtttgctggc tacgatctct gacttttttg tggcatatga ggtgaaaaat gttgtcaaaa
    13201 aagaatctgg tgtttaaaaa gaatcaagct atggtcgcat taaatgttca cttttctcct
    13261 a
//
LOCUS       XM_032648330            2340 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane metalloendopeptidase like 1
            (MMEL1), mRNA.
ACCESSION   XM_032648330
VERSION     XM_032648330.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2340
                     /gene="MMEL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 2%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761898"
     CDS             1..2340
                     /gene="MMEL1"
                     /codon_start=1
                     /product="membrane metallo-endopeptidase-like 1"
                     /protein_id="XP_032504221.1"
                     /db_xref="GeneID:116761898"
                     /translation="MRKPESPVGTVEIAGRAGQEHRGFLEGGLLLLLLLVTGALVALG
                     LLYADRRGKQLPLFTSRLCFSKEEKTIVKRTPRDIQKPRDTSETCTTPGCVMAAARIL
                     QNMDPSEEPCDDFYQYACGGWLRRHVIPETSSRYSIFDILRDELEIILKGVLENSTTK
                     DRPAVQKAKVLYRSCMNESEIEKRDSQPLLDILKVVGGWPVATDKWSESVGARWELEQ
                     QLAVMNAQFNRRVLIDLFIWNDDQNSSQHVIYIDQPTLGMPSREHYFNEGSDQKVREA
                     YLQFMMSVATMLRADMNLPQNSDLVREDMAQVLELETQLANAMAPEEERQDVTALYHR
                     MDLEQLQNKFGLKGFNWTLFIQSVLSSVKIELLPDEEVVVYGIPYLQNLEDIIDVYSP
                     RTMQNYLVWRLVLDRISSLSQRFKDARANYRKALYGTSVQEVRWRECVSYVNSNMESA
                     VGSLYVKEAFPRDSKNMVGELIDQLRAVFVETLDELSWMDESSKKAAQEKAMSIREQV
                     GYPDYILEEGNKHLDEEYSNLNFSEHLYFENGLQNLKAGAQRSLKKLREKVDQNLWII
                     GAAAVNAFYSPNQNQIVFPAGILQPPFFSKEQPQALNFGGIGMVIGHEITHGFDDNGR
                     NFDKNGNMMDWWSNFSAQHFRKQSECMVYQYGNYSWDLADNQNVNGFSTLGENIADNG
                     GVRQAYKAYLKWVAEGGRDQRLPGLQLTYKQVFFIGYAQVWCGSYRPEFAIQSIKTDV
                     HSPLKYRVLGSLQNLAAFADAFHCARGSPMHPKVRCHVW"
     misc_feature    331..2331
                     /gene="MMEL1"
                     /note="Peptidase family M13 includes neprilysin and
                     endothelin-converting enzyme I; Region: M13; cd08662"
                     /db_xref="CDD:341056"
     misc_feature    order(415..417,1696..1698,1711..1722,1777..1779,
                     1825..1830,1837..1842,1849..1851,2026..2028,2155..2157,
                     2164..2169,2218..2223,2239..2241)
                     /gene="MMEL1"
                     /note="active site"
                     /db_xref="CDD:341056"
ORIGIN      
        1 atgaggaagc ccgagagccc ggtggggacg gtggagatcg caggccgcgc agggcaggag
       61 caccgaggct tcctggaggg agggctgctg ctactgctgc ttctggtgac aggtgccctg
      121 gtcgccctgg gcctcctcta cgccgacaga agagggaagc agctgccact ctttactagc
      181 cggctctgct tctcaaagga agagaagacc attgtaaagc gaacaccccg agacatccaa
      241 aagcccaggg acacaagcga aacctgcacc acccctggct gcgtgatggc agccgccagg
      301 atcctccaga acatggaccc gtccgaggag ccctgtgacg acttctacca gtacgcgtgc
      361 gggggctggc tgcggcgcca cgtaatcccc gagaccagct cgcgatacag catcttcgac
      421 atcctccggg atgagctgga gatcattctc aaaggggtgc tagagaattc taccaccaag
      481 gatcggccag ctgtacagaa ggccaaggtg ctgtaccgct cctgcatgaa cgagagcgag
      541 atagaaaagc gagactcgca gcccctgctg gacatcctga aggtggtagg aggctggcca
      601 gtggccacgg acaagtggag cgagagtgta ggcgcccggt gggaactgga gcagcagctg
      661 gccgtgatga acgcacagtt caaccggcgg gtcctcatcg acctcttcat ctggaacgac
      721 gaccagaact ccagccagca cgtcatctat atagaccagc caaccctggg catgccgtcc
      781 cgagagcact acttcaatga gggcagcgac cagaaggtac gggaagccta cctgcagttc
      841 atgatgtcgg tggccacaat gcttcgggcg gacatgaacc tcccccagaa cagcgacctg
      901 gtgcgggagg acatggccca ggtgctggag ctggagacgc agctggccaa cgccatggcc
      961 cccgaggagg agcggcagga cgtcaccgcc ctgtaccaca ggatggacct ggaacagctc
     1021 cagaacaagt tcggtctgaa gggatttaac tggactctct tcatacaatc tgtgctatcc
     1081 tctgtcaaaa tcgagctgct gccagatgag gaagtggtgg tctatggcat cccctacctc
     1141 cagaatcttg aagacatcat cgatgtctac tcacccagga ccatgcagaa ctacctggtc
     1201 tggcgcctgg tgctggaccg catcagcagc ctgagccaga gattcaagga tgcacgcgca
     1261 aactaccgca aggcgctgta cggcacgtcg gtacaggagg tgcgctggcg ggagtgcgtc
     1321 agctacgtca acagtaacat ggagagcgcc gtgggctcac tctacgtcaa ggaggccttc
     1381 cccagggaca gcaagaacat ggtcggagag ctcatcgacc agctgcgggc agtgttcgtg
     1441 gagaccctgg acgagctgag ctggatggac gaatcatcca agaaggcggc ccaggagaag
     1501 gccatgagca tccgggagca ggttgggtat cccgactaca tcctggagga gggaaacaaa
     1561 cacctggacg aggagtattc caatctgaac ttctcggagc acctgtactt tgagaacgga
     1621 ctgcagaatc tcaaggctgg cgcccagcgg agcctcaaga agcttcggga gaaggtggac
     1681 caaaacctct ggatcatcgg ggccgctgcg gtgaacgcgt tctactcccc aaaccaaaac
     1741 cagattgtgt ttcctgccgg gatcctccag cctcctttct tcagcaagga gcagccacag
     1801 gccttgaact ttgggggcat cgggatggtg attgggcacg agatcaccca cggctttgat
     1861 gacaacggcc ggaacttcga caagaacggg aacatgatgg actggtggag taacttctcg
     1921 gcccagcact tccgcaagca gtcggagtgc atggtctacc agtatggcaa ctactcctgg
     1981 gacctggccg acaaccagaa cgtgaatggc ttcagtaccc tcggggaaaa catcgcagac
     2041 aatggagggg tgcggcaggc ctacaaggct tacctaaagt gggtggcgga aggcggcagg
     2101 gaccagcggc tgccaggact gcagctgacc tacaagcagg tgttcttcat cggctacgca
     2161 caggtgtggt gtgggtccta ccggcccgag ttcgccatcc agtccatcaa gaccgacgtc
     2221 cacagccccc tgaagtacag ggtgctgggc tcgctgcaga acctggccgc cttcgcagac
     2281 gcgttccact gcgcgcgggg ctcgcctatg cacccgaagg tgcgatgcca cgtctggtag
//
LOCUS       XM_032648343            4080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 13C (ANKRD13C),
            mRNA.
ACCESSION   XM_032648343
VERSION     XM_032648343.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4080
                     /gene="ANKRD13C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761905"
     CDS             341..1981
                     /gene="ANKRD13C"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 13C"
                     /protein_id="XP_032504234.1"
                     /db_xref="GeneID:116761905"
                     /translation="MTGEKIRSLRRDHKPSKEEGDLLEPGDEEAAAALGGTFPGGRIG
                     TGSSSKGGRACHKIFSNHHHRLQLKTAPASSNPPGAPALPLHNSSVTTTSQSPALLAG
                     TNPVAVVAGGGSCPAHYPVHECVFKGDVRRLSSLIRTHNIGQKDNHGNTPLHLAVMLG
                     NKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVEEKRP
                     RLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGINIRLDTTLIDFTDMK
                     CQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSAT
                     LSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNK
                     AIMESLSKGGNIMEQNFEPIRRQSLTPPPQNTITWEEYISSENGKAPHLGRELVCKES
                     KKTFKATIAMSQEFPLGIESLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVF
                     PTITATVTFQEFRYDEFDGSIFTIPEDYKEDPSRFPDL"
     misc_feature    <635..>952
                     /gene="ANKRD13C"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    698..778
                     /gene="ANKRD13C"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(704..709,716..724,728..733,743..745,776..778,
                     782..784,788..790,800..805,812..820,824..829,839..841,
                     848..850,875..877,881..883,887..889,899..904,911..919,
                     923..928,938..940,947..949)
                     /gene="ANKRD13C"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    782..877
                     /gene="ANKRD13C"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1130..1951
                     /gene="ANKRD13C"
                     /note="GPCR-chaperone; Region: GPCR_chapero_1; pfam11904"
                     /db_xref="CDD:463391"
ORIGIN      
        1 ctcccagggg agttctcgcg agagaagcca ggggaagatg gccgtcccct gtttttcggt
       61 gtgaagcagt ggcggcggct gcggcggtgg agacggggat tctggtgtcg tgggcacctg
      121 aactctagct ccccccagcg agcgcgcgtc ccttcgtgcc taggcgagag ccggctcttc
      181 ttcctccggg agatgcgttt gtcccgggct cgggggcgct ctgggagttc atgctgcgct
      241 ggagtatcct ggccaccgct ctaatcgcct tgtgcggccg cagcgcaagc ttcgtcgcca
      301 ggggtgaacc tcctggatcc cctctctgcc cctggcggcg atgaccggag agaagatccg
      361 ctcattgcgg agggaccaca agcccagcaa agaagagggg gacctgctgg agcccgggga
      421 tgaggaagcg gcggctgccc tcggcggcac ctttcccgga ggcaggattg gcacaggcag
      481 cagcagcaag ggcggtagag cctgtcataa gatcttcagt aaccatcacc accggctaca
      541 gctgaagaca gctccggcct cctccaatcc ccccggcgcc ccggccctgc cgctgcacaa
      601 ttcctccgtg actaccacct cccagtcccc ggctctttta gcgggcacca accccgttgc
      661 tgtcgtcgca ggtggaggca gttgccccgc acactacccg gtgcacgagt gcgtcttcaa
      721 gggggatgtg aggagactgt cctctctcat ccgcacgcac aatatcgggc agaaagataa
      781 tcacggaaac actcctttac atcttgctgt gatgttagga aataaagaat gtgcccattt
      841 acttttggct cacaatgctc cagtaaaggt gaaaaatgct cagggatgga gcccgctggc
      901 agaagccatc agttatggag atagacagat gattacagct cttttaagga agcttaagca
      961 gcaatccagg gaaagtgttg aagaaaaacg acctcgatta ttaaaagccc tgaaagagct
     1021 aggtgacttt tatctagaac ttcactggga ttttcaaagc tgggtgcctt tactttcccg
     1081 aattctgcct tctgatgcat gtaaaatata caaacaaggt atcaatatca ggcttgacac
     1141 tactctcata gactttactg acatgaagtg ccaacgaggg gatttaagct tcattttcaa
     1201 tggggatgcg gcaccctctg aatcttttgt agtattagac aatgaacaaa aagtttatca
     1261 gcgaatacac catgaggaat cagagatgga aacagaagaa gaggttgaca ttttaatgag
     1321 tagcgatatt tactctgcaa ctttatcaac caaatcaatt tctttcacgc gtgcccaaac
     1381 aggatggctt tttcgggaag ataaaacaga aagggtagga aactttttgg ccgactttta
     1441 tctggtgaat ggacttgttt tagaatcaag aaaaagaaga gaacatctca gtgaagaaga
     1501 tattcttcga aataaagcca ttatggagag tttgagtaaa ggtggaaaca taatggagca
     1561 gaattttgag ccaattcgaa gacagtccct tacccctcct cctcagaaca ctattacatg
     1621 ggaagaatat atatcttctg aaaatggaaa agctcctcat ctgggtagag aactggtgtg
     1681 caaagagagt aagaaaacgt ttaaagccac aatagccatg agccaggaat ttcccttggg
     1741 aattgagtca ttattgaatg ttttggaagt aatagctccc ttcaagcact ttaataagct
     1801 tagagaattt gttcagatga agcttcctcc aggctttcct gtaaaactag atatacccgt
     1861 gtttcctacg atcacagcca ctgtgacttt tcaggagttt cgatatgatg aatttgatgg
     1921 ctccattttt accatacctg aagactacaa ggaagaccca agccgttttc ctgatcttta
     1981 actgacacag aaaatgatgc cattcaacca aggaaggcta gagaatgcag agaccccaga
     2041 agtgaattca aatagaaggg acaaatgttt tcatcgaaga aaagggaatt atgttggatc
     2101 gacacatcag tgatatgata taatgaaatg ggcctctaat aagaattcca gcaagtttcc
     2161 tgatgtgcca ttttcagtct ttttaaaaat atacatatta taagtgtaat agtttgacac
     2221 cttaatgacc ccaagtcctt cttatgtaaa acagctatga gtgctgtgat ttgtttttaa
     2281 aaatttttac acttcttgtt gaaatatata tgcatataaa tatatctata tctatatcta
     2341 aaacactcct ggaccattaa cataaagtaa atgtcttaag agatatgaag cccttttaaa
     2401 cttgtcatct tatattcaag gtgaccttta taaatattcc ttcaagcttt gttttcataa
     2461 aatgtaaagt atgtaacatt atgtatagtt cagtaatttg aatgtttgtt caatataatg
     2521 aactagaagg aatgcagttt tctgtagctg aatgaaccaa atggtaacca ttaaacaatt
     2581 gcatttatat gttgcaatac acttcagaag gagcattctc tctgcaggga ataaggtacc
     2641 tcctttagca ccttagtgca attcattgtg gtgctatttg tttttacctg aattctttct
     2701 tcaatggaaa atgtttgtta ataatcttcc tttcatagaa actttttttt tttctaaact
     2761 tgagtttaaa agtccttttt gtgttcatga tgagcatgct taaagatatt cttcttccaa
     2821 atctgagcac tttaaaaaaa ttccaaattt ttaaacttgc ttcctaataa gtgcacatca
     2881 ttctgattat tttgttttta gtggaatatg gatgcatttg tgtcagtttt aaaaacaatc
     2941 cacatatttt gggcatccct acatatttaa tgctttcaaa ataaggaaaa aacattttat
     3001 atgctaatag aatatatttg ttacaagtta aattccagaa acatacacaa gattgacaat
     3061 tcctactgtt tattttttta agtcacaaga aaatatttat tgattttaat tatctccaaa
     3121 gtgttaaaat catgcattat tcatttttgc acataaaaat ttttcatact tattccaaga
     3181 tggtttgaag gtccaacaat gacaataaat tagggagaat aatgtataac agtcataaaa
     3241 tgttatgttg tattaaagag cttagctaag gaaatgtttt ttaaatgtat cttgaaaaat
     3301 gtgtcaaaat gcatctgtca agttttttag agtgaccagt aacttttttc aggattttaa
     3361 ataatttgaa tgagtttaga gacctttatt gaagagatgg cttaaaaatc cgaagcatca
     3421 accataagaa aaattttgta ataaacatct tgaaagctgc atcttccatg ctggtacata
     3481 actacattgc atatgttgac aatttattaa atacatttta taatgaagaa aaataatcat
     3541 agttaaaaat tcaaagacca gtttctacct tatgtgggtc tgttgaattt tgtggaaagg
     3601 gtgggtaaac ccagactagt tttgttaaat agaagttgat ccctattatt ttgggaatgt
     3661 ttgttggatt tagagattct attatcctgt cactgattat atgaggtttg agatactgaa
     3721 aggcaatgat cactgttgct tttaggctcc cttactttgt gggaatatgg tatactttca
     3781 ggaatatact gcagactttt tttgtaattc attggggaaa aaacatggta aattgcagct
     3841 tgggatttat caatttccta aaagctgtga ctgttttgct ggggtacact ggaggtagga
     3901 agactactga aaacttttgc acttgaattt tgtttttaac tttttctttc ataaagaata
     3961 gtagagatta tccattccaa aatgtctttt atctgatcac aaaggacaag caaatgtcag
     4021 tatctcttat gatggtaaaa ataggagtta tttaatgcaa ataaactttt cacagtatta
//
LOCUS       XM_032648355            1651 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus importin subunit alpha-1-like
            (LOC116761911), mRNA.
ACCESSION   XM_032648355
VERSION     XM_032648355.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1651
                     /gene="LOC116761911"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 Proteins, and 90% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116761911"
     CDS             8..1600
                     /gene="LOC116761911"
                     /codon_start=1
                     /product="importin subunit alpha-1-like"
                     /protein_id="XP_032504246.1"
                     /db_xref="GeneID:116761911"
                     /translation="MSTNENANSPAARLNRFKNKGKDSTEMRQRRIEVNVGLRKAKKG
                     DQMLKRRNVSSFPDDAASPLQENHTNQGTVNWSVDDTVKGISSNNLESQLQATQAARR
                     LLSREKQPPIDNIIRVGLIPKFVSCVGRTDCSPIQFESAWALTNIASRTSEQTKAVVD
                     GVAIPAFISLLASPHAHISEQALWALGNIAGDGLVFRDLVIKYGAVDPLLALLEVPDL
                     SSLARGYLRNLTWTLSNLRPNKNPAPPPLDTVEQVLPTLVRLLHHDDPEVLADTCWAI
                     SYLTDGPNEQIEMVVKTGVVPQLVKLLGATELPVVTPAQRAIGNIVTGTDEQTQVVTD
                     AGALAIFPSLRTNSKTNTQKEATWTMSNIMAGRQDQIQQAVHHRLVPFLVGVLSKADF
                     KAQKEAVWAVTNYTRGGTVEQIVYLVHCGVIEPLMNLLTAKDTKVILVTLDAISNIFQ
                     AAEKLGETEKLSIRIEECGGLDKIEALQNHENESVYKASLNLIETYFFVEEEVDQNVV
                     PATTSEGFTFQVQDGTAGTFNF"
     misc_feature    35..1594
                     /gene="LOC116761911"
                     /note="Karyopherin (importin) alpha [Intracellular
                     trafficking and secretion]; Region: SRP1; COG5064"
                     /db_xref="CDD:227396"
     misc_feature    350..448
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    order(419..421,431..433,443..445,545..547,557..559,
                     569..571,686..688,698..700,710..712)
                     /gene="LOC116761911"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:293788"
     misc_feature    470..580
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    596..715
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    767..844
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    order(815..817,827..829,839..841,941..943,953..955,
                     965..967,1067..1069,1079..1081,1091..1093)
                     /gene="LOC116761911"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:293788"
     misc_feature    866..976
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    992..1096
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    1118..1228
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    1247..1351
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    1388..1489
                     /gene="LOC116761911"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
ORIGIN      
        1 catacccatg tccaccaatg agaatgctaa ttcaccagcc gcccgactta acagattcaa
       61 gaacaagggg aaagacagta cagaaatgag gcagcgccga atagaagtta atgtggggct
      121 caggaaagct aagaagggtg accagatgct gaaaaggaga aatgtcagct cttttccaga
      181 tgatgctgct tctccactgc aggaaaacca caccaaccag ggcactgtaa attggtctgt
      241 tgatgacact gtcaaaggca taagtagcaa caacttggaa agccagctcc aagctactca
      301 agctgctagg agactgcttt ctagggaaaa acagcccccc atagacaaca taatccgggt
      361 gggtttgatt ccaaaatttg tgtcctgcgt gggcagaact gactgtagtc ccattcagtt
      421 tgaatctgct tgggccctca ctaacattgc ttccaggaca tcagaacaga ccaaggctgt
      481 ggtagatgga gttgctatcc cagcattcat ttctctgttg gcatctcccc acgctcacat
      541 cagtgaacaa gctctatggg ctctaggaaa cattgcaggt gatggcttgg ttttccgaga
      601 cttggttatc aagtatggtg cagttgaccc gctgttggca ctcctggagg ttcctgattt
      661 gtcatcttta gcacgtggtt acttacgtaa tctcacctgg acactttcaa atcttcgtcc
      721 taacaagaat cctgcaccac ccccgttaga cactgttgag caagttcttc ctactttagt
      781 tcgtctcctg catcacgatg atccagaagt tttagctgat acctgctggg ctatttccta
      841 ccttaccgat ggtccaaatg aacagattga aatggttgtg aaaaccgggg ttgtacccca
      901 acttgtgaag cttttaggag ctacggaatt gccagtcgtg actcccgcgc aaagagccat
      961 aggcaatatc gtcactggga cagatgaaca gactcaagtt gtaacagatg caggagcact
     1021 tgccatcttt cccagcctgc gaacaaactc caaaacaaat actcagaagg aagctacgtg
     1081 gacaatgtca aacatcatgg ctggccgcca ggaccaaata caacaagctg tacatcatag
     1141 attagtcccg ttccttgttg gcgttctctc taaggcagac tttaaggcac agaaggaagc
     1201 tgtatgggct gtgaccaact atacacgtgg tggaacagtt gagcagatcg tataccttgt
     1261 tcattgtggc gtaatagagc cgttgatgaa cctcctaact gcgaaagaca ccaaggttat
     1321 tctggttact ctggatgcca tttcaaatat ctttcaggct gctgagaaac taggggaaac
     1381 tgagaaactt agtataagga ttgaagaatg tggaggtttg gacaaaattg aagctctaca
     1441 aaaccatgaa aatgagtctg tgtacaaagc ttcattaaac ttgattgaga cgtatttctt
     1501 tgtggaggaa gaggtagacc aaaatgttgt gccagcaact acctctgaag ggtttacgtt
     1561 ccaagttcag gatggcactg ctgggacctt caacttttag actgtacacc tgaggcatta
     1621 agttgtttgt tgtgtactgt gtttggtaga a
//
LOCUS       XM_032648367            1301 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus calsequestrin 2 (CASQ2), mRNA.
ACCESSION   XM_032648367
VERSION     XM_032648367.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1301
                     /gene="CASQ2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 Proteins"
                     /db_xref="GeneID:116761918"
     CDS             72..1301
                     /gene="CASQ2"
                     /codon_start=1
                     /product="calsequestrin-2"
                     /protein_id="XP_032504258.1"
                     /db_xref="GeneID:116761918"
                     /translation="MKRTHLFVVAVYLLSSCRAEEGLSFPTYDGKDRVVSLTEKNFKQ
                     VLKKYDLLCLYYHEPVSSDKVAQKQFQMKEIVLELVAQVLEHKDIGFVMVDAKKEAKL
                     AKKLGFDEEGSLYVLKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFER
                     IEDHIKLIGFFKSEDSEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYE
                     PFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAER
                     SDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVV
                     NVTDADSVWMEIPDGDDLPTAEELEDWIEDVLSGKINTEDDDSEDEEDEEDDDDNDDD
                     DDDNSDEGDDDSDDDDD"
     misc_feature    135..1184
                     /gene="CASQ2"
                     /note="Region: Calsequestrin; pfam01216"
                     /db_xref="CDD:395972"
ORIGIN      
        1 aagtcctcta cggcaccagt ctctttccta cacaccgtgt ctctgggaaa gaaaaacaaa
       61 acttcgccca gatgaagaga acccacctgt ttgtggtggc ggtctacctg ctgtcctcct
      121 gcagggcaga ggaggggctg agcttcccca cctatgacgg caaggaccgc gtggtcagtc
      181 taaccgagaa gaacttcaag caggttttga agaaatacga cttgctctgc ctctactacc
      241 atgagcccgt gtcttcagat aaagtcgcgc agaaacagtt ccaaatgaaa gaaatcgtgc
      301 tggagcttgt ggcccaagtc ctggaacata aagatatagg ctttgtgatg gtggatgcca
      361 agaaagaagc caagcttgcc aagaaactgg gttttgatga agaaggaagt ctgtatgttc
      421 ttaagggtga tcgcacaatt gagtttgatg gcgagtttgc cgctgatgtc ttggtggagt
      481 ttctcttgga cctcattgaa gaccccgtgg agatcatcaa cagcaaactg gaagtccaag
      541 cctttgagcg cattgaggac catatcaaac tcatcggctt tttcaagagt gaggactcag
      601 agtattacaa ggcttttgaa gaggcagctg aacatttcca gccgtacatc aaattttttg
      661 ctactttcga caaaggggtt gcaaagaaat tgtccttgaa gatgaatgag gttgacttct
      721 atgagccatt tatggacgag cccattgcca tccctgacaa accctacaca gaagaggagc
      781 ttgtggagtt tgtgaaggag caccaaagac ccactctacg tcgcttgcgc ccagaagata
      841 tgtttgagac atgggaagat gatttgaacg ggatccacat tgtggccttc gcagagagga
      901 gtgatccaga tggctatgag ttcctggaga tcctgaagca ggttgctcgg gacaacacgg
      961 acaaccctga cctaagcatc gtatggatcg acccagatga ctttcctctg cttgttgcct
     1021 attgggaaaa gactttcaag attgacctat tcaagccaca gattggagtg gtgaatgtta
     1081 cagatgctga cagtgtctgg atggagattc cagatggtga tgacctgccc acagctgagg
     1141 agctggaaga ctggattgag gacgtgcttt ctgggaagat aaacactgag gatgatgaca
     1201 gcgaagatga agaggatgaa gaggatgacg acgacaatga tgacgatgac gatgacaatt
     1261 ctgacgaagg ggatgatgac agtgatgacg atgatgacta g
//
LOCUS       XM_032648381            1980 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gap junction protein beta 3 (GJB3), mRNA.
ACCESSION   XM_032648381
VERSION     XM_032648381.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1980
                     /gene="GJB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 long SRA reads, 22
                     Proteins, and 88% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761924"
     CDS             56..1189
                     /gene="GJB3"
                     /codon_start=1
                     /product="gap junction beta-3 protein"
                     /protein_id="XP_032504272.1"
                     /db_xref="GeneID:116761924"
                     /translation="MPPFHTGRSSPGSDGRQAREKVAGGTSDSVWTKTRPSAAGGSRA
                     PPLTLPPPRRPRLCLPPRASPPLQRRGSGPAGLRCGPRTRGVPAPRWPRRCWRARPTA
                     PPPATMDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDC
                     NTKQPGCTNVCYDEFFPISNIRLWALQLIFVTCPSLLVILHVAYREERERRHRQKHGD
                     QCAKLYDNAGKKHGGLWWTYLFSLIFKLLIEFLFLYLLHTLWYGFSMPRLVQCANVAP
                     CPNIVDCYIARPTEKKLFTYFMVGASAVCIVLTFCEICYLIFHRVVRSLPRKSGLRGR
                     GPPSTASQASTCRCHHKLVEAGELGPDSSDDKLCASAPNMTPI"
     misc_feature    380..1009
                     /gene="GJB3"
                     /note="Region: Connexin; pfam00029"
                     /db_xref="CDD:459638"
ORIGIN      
        1 cttcacgctc cgaatctcat cggacccttt gccacagccc tgccaagggc cacagatgcc
       61 cccgtttcac acaggaagaa gcagcccagg ctcagacggg cgtcaagccc gggagaaggt
      121 tgccggggga acgagtgaca gtgtctggac taaaacccga ccctctgcgg cgggcggctc
      181 ccgagctcct cccctgaccc tccctcctcc acgccgcccc cggctgtgcc tgccgccacg
      241 cgcctcgccg ccactgcaga gacgcggctc cggtcccgct ggcctccgct gcgggcctcg
      301 aacacgcggg gtcccggccc cccgctggcc gcgccgctgc tggcgggcac ggcccacagc
      361 gcccccacca gccaccatgg actggaagac gctccaggcc ctactgagcg gggtgaacaa
      421 gtactccaca gccttcggac gcatctggct gtcggtggtg ttcgtcttcc gcgtgctggt
      481 gtacgtggtg gctgcggagc gcgtgtgggg ggacgagcag aaggactttg actgcaacac
      541 taagcagcca ggctgcacca acgtctgcta cgacgagttc ttccccatct ccaacatccg
      601 cctctgggcc ctgcagctca tcttcgtcac gtgcccgtca ctgctggtca tcctgcacgt
      661 ggcctaccgc gaggagcggg agcggcggca ccgccagaaa cacggcgacc agtgcgccaa
      721 gctgtacgac aacgcgggca agaagcacgg tggcctctgg tggacctacc tgttcagcct
      781 catcttcaag ctcctcatcg aattcctctt cctctacttg ctgcacaccc tctggtacgg
      841 cttcagcatg ccccgcctgg tccagtgcgc caacgtggcc ccctgcccca acatcgtgga
      901 ctgctacatc gcccggccca ccgagaagaa gctcttcacc tacttcatgg tgggcgcctc
      961 cgccgtctgc atcgtgctca ccttctgcga gatctgctac ctcatcttcc acagggtcgt
     1021 gcgaagcctt cccagaaaga gcggcctccg gggccgcggc cccccgtcca ccgccagcca
     1081 ggcctccacc tgccgctgcc accacaagct ggtggaggcc ggggagttgg gcccggattc
     1141 cagcgacgac aagctatgtg cttcggcacc caacatgacc cccatctgac cacgggctgg
     1201 ggagcgatcc tgggctgccc gtggggagag gcagggaggt attgtgccgg tggaggggtc
     1261 ctcccggggc tggggggccc cactctgaat tcactacact attcaatttc acctttagta
     1321 gattgttttg agtgctgggc actgtgctgt ctgtctggta taggtcacac cacaggccca
     1381 ctggcagccc tcctgggaga aagacaagca aattaactac tgcctgcaag gggacactta
     1441 gaggactccg ctgggcttca cctaagccag gaggggatga tggggagagg cttccctgaa
     1501 ggaggaatgt ttaagagagg tgagaagtgc ttcctagcag acaaaagcag gtgcagaggc
     1561 ctggaggcca caaaaggaaa gatgcttgcc ctgggtctgg tgagatgtac cagaccaaag
     1621 ggaatcttca ttccttcggg agaagcaccc agattcctgg gatggaaagg aagtatcctc
     1681 ccagcagtgg aggtctggag gctgagagtg agcctgggaa gaggaggggt aagctctggt
     1741 gacaccaacc ccggcttgag acacccagag atcctctggg tcaccactgc cctttgggaa
     1801 cccgcccccc atcttattcc tccaccctca ggcagctttg ctcccatctt cctcccacaa
     1861 gtgtactcag tctgttgcca gcctttcaga ccctactctc agggacttga ggtggatgtg
     1921 ctgataggaa catccccgag gcaatttctt tgaaatcaat aaaggctgtc ttttatacag
//
LOCUS       XM_032648395            1588 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gap junction protein alpha 4 (GJA4),
            transcript variant X1, mRNA.
ACCESSION   XM_032648395
VERSION     XM_032648395.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1588
                     /gene="GJA4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 25
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761931"
     CDS             91..1092
                     /gene="GJA4"
                     /codon_start=1
                     /product="gap junction alpha-4 protein"
                     /protein_id="XP_032504286.1"
                     /db_xref="GeneID:116761931"
                     /translation="MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESV
                     WGDEQSDFECNTAQPGCTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRR
                     EERLRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVL
                     CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGL
                     ISLVLNLLELAYLLCRCLNRGLRARQSQDTPPAQGTSSEPYADQVFFYLPMGEGPSSP
                     PCPTYNGLSSSEQNWANLTTEERLASSRPPLFLDPPPQSGRKSPSRPSSSASKKQYV"
     misc_feature    97..756
                     /gene="GJA4"
                     /note="Region: Connexin; pfam00029"
                     /db_xref="CDD:459638"
ORIGIN      
        1 ggcaaggctc ccacgggcgc cgctccggcc gacgcgcgtc cccactgtca cctgggccgc
       61 cggcaggcag gcgacggagg cccaggagcc atgggcgact ggggcttcct tgagaagctg
      121 ctggaccagg tccaggagca ctcgaccgtg gtgggcaaga tctggctgac ggtccttttc
      181 atcttccgca tcctcatcct gggcctggct ggcgagtcag tgtggggcga cgagcagtct
      241 gatttcgagt gtaacacggc ccagccaggc tgcaccaacg tctgctacga ccaggccttc
      301 cccatctccc acatccgcta ctgggtgctg cagttcctct tcgtcagcac gcccaccctg
      361 gtctacctgg gccatgtcat ttacctgtct cggcgcgagg agcggctgcg gcagaaagag
      421 ggggagctgc gggcactgcc ggccaaggac ccacgcgtgg agcgggcact ggcagccata
      481 gagcgacaga tggccaagat ctcggtggcg gaggacggtc acctgcggat ccgtggggcg
      541 ctgatgggca cctatgtggc cagcgtgctc tgcaagagtg tgctagaagc aggcttcctg
      601 tacggccagt ggcgtctcta tggctggacc atggagcctg tgttcgtgtg ccagcgctca
      661 ccctgcccct acctcgtgga ctgctttgtc tcacgcccca cggagaagac tatcttcatc
      721 atcttcatgc tggtggttgg actcatctcc ctggtgctca acctgctgga gctggcgtac
      781 ctgctgtgcc gctgcctcaa ccgggggctg agggcccggc agagccagga cacgccccca
      841 gcccagggca cctcctcgga gccttatgct gaccaggtct tcttctacct ccccatgggt
      901 gaggggccct catccccgcc atgccccacc tacaatgggc tctcgtccag tgagcagaac
      961 tgggccaacc tgactacgga ggagaggctg gcttcttcca gaccccccct cttcctggac
     1021 ccgccccccc agagtggccg gaaatccccc agtcgcccca gcagctctgc ttccaagaaa
     1081 cagtatgtat aagagcccgg gaagtcttgc tgcctttagt gcaagactct gcagagatga
     1141 ctggggctgg ggaagcaggt gcttgctggc cagaaagcct cactgcatgt tgttcttgaa
     1201 cacctggggc cttcctggtg accggagggc accatagttt cccctccaga atgtggcttt
     1261 gtcccaggca cagacagagg cagcttgggg tgctcttggc caagggtgtt tgggccctgt
     1321 ggtctttttc accgtgttca aagggactcg gagacaactt cctccacccc cacccccacc
     1381 ccctggaaga ttcacctctg cccaggttgt ccacacaccc tgtcctcaca gaaaaaggct
     1441 ggtcgaggct gctgggtcag ccttgatccc acacacagac agggcctgtg ctggatctgg
     1501 ccctgtcaag gggactgggg tcttgttctc atcactcctt cctagttctg ctgtttatcc
     1561 ttctaaaata aacaggactt gaccacaa
//
LOCUS       XM_032648404            1782 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gap junction protein alpha 4 (GJA4),
            transcript variant X2, mRNA.
ACCESSION   XM_032648404
VERSION     XM_032648404.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1782
                     /gene="GJA4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 25 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761931"
     CDS             285..1286
                     /gene="GJA4"
                     /codon_start=1
                     /product="gap junction alpha-4 protein"
                     /protein_id="XP_032504295.1"
                     /db_xref="GeneID:116761931"
                     /translation="MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESV
                     WGDEQSDFECNTAQPGCTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRR
                     EERLRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVL
                     CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGL
                     ISLVLNLLELAYLLCRCLNRGLRARQSQDTPPAQGTSSEPYADQVFFYLPMGEGPSSP
                     PCPTYNGLSSSEQNWANLTTEERLASSRPPLFLDPPPQSGRKSPSRPSSSASKKQYV"
     misc_feature    291..950
                     /gene="GJA4"
                     /note="Region: Connexin; pfam00029"
                     /db_xref="CDD:459638"
ORIGIN      
        1 caaggctccc acgggcgccg ctccggccga cgcgcgtccc cactgtcacc tgggccgccg
       61 gcaggcaggc ggctcaggag cctcaccttg atccagacct ccttcagctg tggtcaccct
      121 gggactgcag ctgggaacaa gagggacaca gatgtgacta gacagggacc ctagctgtac
      181 ccttgccaga gcttagcagt catcatccaa agatctgggt gtgagtcccc aggccagtcc
      241 cttcccctcc tggagctcag tttccctacg gaggcccagg agccatgggc gactggggct
      301 tccttgagaa gctgctggac caggtccagg agcactcgac cgtggtgggc aagatctggc
      361 tgacggtcct tttcatcttc cgcatcctca tcctgggcct ggctggcgag tcagtgtggg
      421 gcgacgagca gtctgatttc gagtgtaaca cggcccagcc aggctgcacc aacgtctgct
      481 acgaccaggc cttccccatc tcccacatcc gctactgggt gctgcagttc ctcttcgtca
      541 gcacgcccac cctggtctac ctgggccatg tcatttacct gtctcggcgc gaggagcggc
      601 tgcggcagaa agagggggag ctgcgggcac tgccggccaa ggacccacgc gtggagcggg
      661 cactggcagc catagagcga cagatggcca agatctcggt ggcggaggac ggtcacctgc
      721 ggatccgtgg ggcgctgatg ggcacctatg tggccagcgt gctctgcaag agtgtgctag
      781 aagcaggctt cctgtacggc cagtggcgtc tctatggctg gaccatggag cctgtgttcg
      841 tgtgccagcg ctcaccctgc ccctacctcg tggactgctt tgtctcacgc cccacggaga
      901 agactatctt catcatcttc atgctggtgg ttggactcat ctccctggtg ctcaacctgc
      961 tggagctggc gtacctgctg tgccgctgcc tcaaccgggg gctgagggcc cggcagagcc
     1021 aggacacgcc cccagcccag ggcacctcct cggagcctta tgctgaccag gtcttcttct
     1081 acctccccat gggtgagggg ccctcatccc cgccatgccc cacctacaat gggctctcgt
     1141 ccagtgagca gaactgggcc aacctgacta cggaggagag gctggcttct tccagacccc
     1201 ccctcttcct ggacccgccc ccccagagtg gccggaaatc ccccagtcgc cccagcagct
     1261 ctgcttccaa gaaacagtat gtataagagc ccgggaagtc ttgctgcctt tagtgcaaga
     1321 ctctgcagag atgactgggg ctggggaagc aggtgcttgc tggccagaaa gcctcactgc
     1381 atgttgttct tgaacacctg gggccttcct ggtgaccgga gggcaccata gtttcccctc
     1441 cagaatgtgg ctttgtccca ggcacagaca gaggcagctt ggggtgctct tggccaaggg
     1501 tgtttgggcc ctgtggtctt tttcaccgtg ttcaaaggga ctcggagaca acttcctcca
     1561 cccccacccc caccccctgg aagattcacc tctgcccagg ttgtccacac accctgtcct
     1621 cacagaaaaa ggctggtcga ggctgctggg tcagccttga tcccacacac agacagggcc
     1681 tgtgctggat ctggccctgt caaggggact ggggtcttgt tctcatcact ccttcctagt
     1741 tctgctgttt atccttctaa aataaacagg acttgaccac aa
//
LOCUS       XM_032648419            1320 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gap junction protein beta 5 (GJB5), mRNA.
ACCESSION   XM_032648419
VERSION     XM_032648419.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1320
                     /gene="GJB5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 23 Proteins"
                     /db_xref="GeneID:116761936"
     CDS             153..974
                     /gene="GJB5"
                     /codon_start=1
                     /product="gap junction beta-5 protein"
                     /protein_id="XP_032504310.1"
                     /db_xref="GeneID:116761936"
                     /translation="MNWGIFEGLLSGVNKYSTAFGRIWLSLVFIFRVLVYLVTAERVW
                     SDDHKDFDCDTRQPGCSNVCFDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREARE
                     KKHQEAAGKNGGRLYLDPGKKRGGLWWTYVCSLVFKAGVDAAFLYVFHSFYPKYTLPR
                     VVRCHVAPCPNTVDCFISKPTEKNIFTLFMVITAVVCIVLNLVELAYLVNKRYRECLL
                     VRKARATGLGHRRDWATASSKQDDLRLGDLIFLGSDAPPPLSPDHPRDHVNKTIL"
     misc_feature    156..779
                     /gene="GJB5"
                     /note="Region: Connexin; pfam00029"
                     /db_xref="CDD:459638"
ORIGIN      
        1 ctctgtccta ggaacgggct tccccagaca ctctccctgg ttctgacatg agttcccgct
       61 gcctgctgag ttcgacggct ggcagccagg agccggtacc cagagagccc tgaggagtag
      121 ccactcagta gcggccgacg cccggggaca ccatgaactg ggggatcttc gaggggctcc
      181 tgagcggggt caacaagtac tccacagcct tcgggcgcat ctggctgtcc ctggtcttca
      241 tcttccgcgt gctggtgtac ctggtgacag ccgagcgcgt gtggagtgat gaccacaagg
      301 acttcgactg tgacacccgc cagccgggct gctccaacgt ctgcttcgac gagttcttcc
      361 ccgtgtccca cgtgcgcctc tgggccctgc agctcatcct ggtcacgtgc ccctcgctgc
      421 tcgtggtcat gcacgtggcc taccgcgagg cccgggagaa gaagcaccaa gaggcagcag
      481 ggaagaacgg cgggcgcctc tacctggacc ccggcaagaa gcggggcggg ctctggtgga
      541 cgtacgtctg cagcctggtg ttcaaggccg gcgtggatgc cgccttcctc tacgtgttcc
      601 actcgttcta ccccaaatac accctccctc gcgtggtcag gtgccacgtg gctccgtgtc
      661 ccaatacggt ggactgcttc atctccaagc ccacggagaa gaacatcttc actctcttca
      721 tggtgatcac ggccgtcgtt tgcatcgtgc tcaacctagt ggagctggcc tacctggtga
      781 acaagaggta ccgggagtgc ctgctggtga ggaaagcccg ggccacgggc ctgggccacc
      841 gccgggactg ggccaccgct tcctccaaac aggacgacct ccgcttgggc gacctcatct
      901 ttctgggctc agacgctccc cctcctctct caccagacca ccctcgagac cacgtgaata
      961 aaaccatcct gtgaggggct gcctggtcag gcctgggttg gaaggacccg gcagccacgg
     1021 tgcagccttg ggggtgggag cgctgtgcgg ggagtgggga caggcaagag ggagggtccg
     1081 acgacctggg ttcagatccc ttttccccag ctcctgccac ctaccccagc tgtgtggcct
     1141 tgggcaagtt acccctcgga gctgaacctc ggcttccttt tgcatacaac ggagaggatg
     1201 aggcaccccc caacagggct gccgctgtga ggaggggctt aatacgagaa tggatgtgca
     1261 catgccttca gtgtgtggtg cccacggtca gggcttaata aaagtcaatt cattcactga
//
LOCUS       XM_032648435             789 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gap junction protein beta 4 (GJB4), mRNA.
ACCESSION   XM_032648435
VERSION     XM_032648435.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-723               VOSU01000011.1     27998827-27999549
            724-724             "N"                1-1
            725-789             VOSU01000011.1     27999550-27999614
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..789
                     /gene="GJB4"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 7 Proteins"
                     /db_xref="GeneID:116761940"
     CDS             1..789
                     /gene="GJB4"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 2 bases at 2 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:106..108,aa:OTHER)
                     /transl_except=(pos:505..507,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: gap junction beta-4
                     protein"
                     /protein_id="XP_032504326.1"
                     /db_xref="GeneID:116761940"
                     /translation="MNWAFLRGVLNGVNKYFTALGHIWLSMVFIFRVLVXVVAAEELW
                     DDEQKGFICNTRQPGCANICYNELFPVSHVRLWALQLIPVMCPSLLVVMRVVYHQERK
                     RKHRLKHGPDIPFLYNNLDKNRGGLWWTDLLSLLVKAAVDSGFLYIFQRLYQDYDMPH
                     VVACSELPXPRTADCYISRPAGKKVFTHFMVAAAMLNLSEVTHPVGKRCLETLGSRCR
                     GSQRWTHLPETCPPYALSQGEHPXDGNSVLMKAGSSTVDAGEYP"
     misc_feature    4..609
                     /gene="GJB4"
                     /note="Region: Connexin; pfam00029"
                     /db_xref="CDD:459638"
ORIGIN      
        1 atgaactggg cgttcctgcg gggcgtcctg aatggggtga acaagtactt cacggcactg
       61 ggccacatct ggctgtccat ggtcttcatc ttccgcgtgc tggtgtaggt ggtggcggcc
      121 gaggagctgt gggatgatga gcaaaagggc ttcatctgca acacccgcca gccgggctgc
      181 gccaacattt gctacaatga gttgttcccc gtgtcccacg tgcgcctctg ggccctgcag
      241 ctcatcccag tcatgtgtcc ctcactgctc gtggtcatgc gtgtggtcta ccaccaggag
      301 cgcaagcgga agcaccgcct gaagcacggg cccgacatcc cattcctata caacaacctg
      361 gacaagaatc ggggcgggct ctggtggaca gacctgctga gtctcctcgt caaggcggcc
      421 gtcgactctg gcttcctcta catctttcag cgcctctacc aggactatga catgccccac
      481 gtggtggcct gctccgagtt gccatgaccc cgcactgcgg actgctacat ctcccggccc
      541 gcagggaaga aggtcttcac gcacttcatg gtggccgcag ccatgctcaa cctcagtgag
      601 gtcacccacc cggtgggcaa gaggtgcctg gagacccttg gctccagatg ccgggggtct
      661 cagcgctgga ctcacctgcc tgagacatgc ccaccatatg ccctctccca gggggagcac
      721 cccnaggatg ggaactctgt cctaatgaag gctggatcga gcacagtgga tgcaggtgag
      781 tatccataa
//
LOCUS       XM_032648449            1088 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small integral membrane protein 12
            (SMIM12), transcript variant X1, mRNA.
ACCESSION   XM_032648449
VERSION     XM_032648449.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1088
                     /gene="SMIM12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761941"
     CDS             131..409
                     /gene="SMIM12"
                     /codon_start=1
                     /product="small integral membrane protein 12"
                     /protein_id="XP_032504340.1"
                     /db_xref="GeneID:116761941"
                     /translation="MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDLQPVE
                     EEKSISERREDRKLDELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN"
     misc_feature    131..391
                     /gene="SMIM12"
                     /note="UPF0767 family; Region: UPF0767; pfam15990"
                     /db_xref="CDD:464960"
ORIGIN      
        1 ggtgggcggg gtccggggcg aggtctcggg ggccgctggg agtggcggct tcggtgctac
       61 cccagcgcgg gcggatcgcg ggcggaaggc tggggccgga cggcggggtg tgagctgcgg
      121 cgcggatgtc atgtggcctg tgctttggac cgtggtgcgt acctatgctc cctatgtcac
      181 ctttcccgtg gccttcgtgg ttggggctgt gggctaccac ctggaatggt tcatccgggg
      241 gaaggatctc cagcctgtgg aggaggagaa gagcatctcg gagcgccggg aggaccgcaa
      301 gctggatgag ctgctaggca aggaccacac ccaggtcgtg agccttaagg acaagctgga
      361 atttgcccct aaagctgtcc tgaacagaaa ccgcccggag aagaattaat ggaggacaca
      421 gggccctatg ggtccttctg ggggccagga ctggtcctgc caccatgtca acccagcaac
      481 cagaacccac atctgatttg ctttattgct tcttctggcc cctcccgccc cacacagcca
      541 cacacatact ggctgctctg ctatggccag gcagacacac tagtagctga ggggccagtg
      601 aagtggaagg cccgtgaggg ttctggcctg aaggctgcct ctgctggatg gtgaccacag
      661 ctgctcaggc ttctgtgttg ctaggtgcac cactgggagg agagtgatga agtgaacatt
      721 ggccgtcatt ccctgtgggg aggcagtttg gcctcaggtg ggagtggctg ggattggggt
      781 gatgccttta ggaggggtac ctacatgcct agttctggtt tgcactggga agagttcaga
      841 aatctccctg gctcccttag ctagcttgct ctgtcctttg tgtgcattct ccctgaaatc
      901 ctgtcctgtc agctcaggaa ggggattccc ctgggaagga aagcagtttt ctgttcttgg
      961 gagcccaggc tgttcacctt ggggcaggtg gatttgcttg aaaacagtca ttgtctttca
     1021 ccccccaccc cgtcactgtg tagtgcaaaa cttgattaaa gtggcgtctg agaaccattt
     1081 tgatctaa
//
LOCUS       XM_032648457            1630 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small integral membrane protein 12
            (SMIM12), transcript variant X2, mRNA.
ACCESSION   XM_032648457
VERSION     XM_032648457.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1630
                     /gene="SMIM12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761941"
     CDS             684..962
                     /gene="SMIM12"
                     /codon_start=1
                     /product="small integral membrane protein 12"
                     /protein_id="XP_032504348.1"
                     /db_xref="GeneID:116761941"
                     /translation="MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDLQPVE
                     EEKSISERREDRKLDELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN"
     misc_feature    684..944
                     /gene="SMIM12"
                     /note="UPF0767 family; Region: UPF0767; pfam15990"
                     /db_xref="CDD:464960"
ORIGIN      
        1 ccggcaggca gttcctaccc ccgagcggct gctgggccgc ccgtagccgt ggcgacggct
       61 ggtggccttg acctctgagt gaggggaagg gagatggcga gcgtccgctg cggccctggc
      121 caggctagac tgctccctct cttccccggg ctcggcgtgg gagtctgagc gccctgcaga
      181 cattctgcag cccgggcttc tcggccttag gcacgtgggt gaggacagac cagacgaggc
      241 cgtgagcgtg gtgggatagg ggcaggggac cgggaaccta gaggagggag aagggcagac
      301 ccttggacct gacctccttg cgctctcata cccggaccgg gctcagtaac ggtcagaatg
      361 aattcttcca cccagtcagg tctcctctgc ccttgttagc agttctcaaa tctcggacgg
      421 cttcgcgtct ccttgggcct ccgaggtccc cggcacaagg gcaggtttcc cggcaacctt
      481 taccgtttga ccttaaccgg acgctcaggc tctttcggtg cggggctgga aatatttgcc
      541 acttttgcct ctttcgtttt gacaccctgg agatgacttg ttagagtatc tagctacttg
      601 taatcagcaa aggcacctgc tgtgttcctg ccgcctttcg agggcgggtg gttagatgac
      661 tgcggtggtt ttacacaaat gtcatgtggc ctgtgctttg gaccgtggtg cgtacctatg
      721 ctccctatgt cacctttccc gtggccttcg tggttggggc tgtgggctac cacctggaat
      781 ggttcatccg ggggaaggat ctccagcctg tggaggagga gaagagcatc tcggagcgcc
      841 gggaggaccg caagctggat gagctgctag gcaaggacca cacccaggtc gtgagcctta
      901 aggacaagct ggaatttgcc cctaaagctg tcctgaacag aaaccgcccg gagaagaatt
      961 aatggaggac acagggccct atgggtcctt ctgggggcca ggactggtcc tgccaccatg
     1021 tcaacccagc aaccagaacc cacatctgat ttgctttatt gcttcttctg gcccctcccg
     1081 ccccacacag ccacacacat actggctgct ctgctatggc caggcagaca cactagtagc
     1141 tgaggggcca gtgaagtgga aggcccgtga gggttctggc ctgaaggctg cctctgctgg
     1201 atggtgacca cagctgctca ggcttctgtg ttgctaggtg caccactggg aggagagtga
     1261 tgaagtgaac attggccgtc attccctgtg gggaggcagt ttggcctcag gtgggagtgg
     1321 ctgggattgg ggtgatgcct ttaggagggg tacctacatg cctagttctg gtttgcactg
     1381 ggaagagttc agaaatctcc ctggctccct tagctagctt gctctgtcct ttgtgtgcat
     1441 tctccctgaa atcctgtcct gtcagctcag gaaggggatt cccctgggaa ggaaagcagt
     1501 tttctgttct tgggagccca ggctgttcac cttggggcag gtggatttgc ttgaaaacag
     1561 tcattgtctt tcacccccca ccccgtcact gtgtagtgca aaacttgatt aaagtggcgt
     1621 ctgagaacca
//
LOCUS       XM_032648461            1080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small integral membrane protein 12
            (SMIM12), transcript variant X3, mRNA.
ACCESSION   XM_032648461
VERSION     XM_032648461.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1080
                     /gene="SMIM12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761941"
     CDS             134..412
                     /gene="SMIM12"
                     /codon_start=1
                     /product="small integral membrane protein 12"
                     /protein_id="XP_032504352.1"
                     /db_xref="GeneID:116761941"
                     /translation="MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDLQPVE
                     EEKSISERREDRKLDELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN"
     misc_feature    134..394
                     /gene="SMIM12"
                     /note="UPF0767 family; Region: UPF0767; pfam15990"
                     /db_xref="CDD:464960"
ORIGIN      
        1 tccctaacaa ttgactcttc tgaaatttcc tggattgttt cggagaccca actgttgcat
       61 aaagcagggt gccctcttgc attgctctgc atggggtgga tgctcagtaa atcgtgccag
      121 gctgcctgat gtcatgtggc ctgtgctttg gaccgtggtg cgtacctatg ctccctatgt
      181 cacctttccc gtggccttcg tggttggggc tgtgggctac cacctggaat ggttcatccg
      241 ggggaaggat ctccagcctg tggaggagga gaagagcatc tcggagcgcc gggaggaccg
      301 caagctggat gagctgctag gcaaggacca cacccaggtc gtgagcctta aggacaagct
      361 ggaatttgcc cctaaagctg tcctgaacag aaaccgcccg gagaagaatt aatggaggac
      421 acagggccct atgggtcctt ctgggggcca ggactggtcc tgccaccatg tcaacccagc
      481 aaccagaacc cacatctgat ttgctttatt gcttcttctg gcccctcccg ccccacacag
      541 ccacacacat actggctgct ctgctatggc caggcagaca cactagtagc tgaggggcca
      601 gtgaagtgga aggcccgtga gggttctggc ctgaaggctg cctctgctgg atggtgacca
      661 cagctgctca ggcttctgtg ttgctaggtg caccactggg aggagagtga tgaagtgaac
      721 attggccgtc attccctgtg gggaggcagt ttggcctcag gtgggagtgg ctgggattgg
      781 ggtgatgcct ttaggagggg tacctacatg cctagttctg gtttgcactg ggaagagttc
      841 agaaatctcc ctggctccct tagctagctt gctctgtcct ttgtgtgcat tctccctgaa
      901 atcctgtcct gtcagctcag gaaggggatt cccctgggaa ggaaagcagt tttctgttct
      961 tgggagccca ggctgttcac cttggggcag gtggatttgc ttgaaaacag tcattgtctt
     1021 tcacccccca ccccgtcact gtgtagtgca aaacttgatt aaagtggcgt ctgagaacca
//
LOCUS       XM_032648472           10656 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X1, mRNA.
ACCESSION   XM_032648472
VERSION     XM_032648472.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10656
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10656
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761951"
     CDS             113..6535
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X1"
                     /protein_id="XP_032504363.1"
                     /db_xref="GeneID:116761951"
                     /translation="MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGSIS
                     HHTTVPLTEAVDPVDLEDYLITHPLAVDSGLLRDLIEFPPDDIEVVYSPRDCRTLVSA
                     VPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFES
                     DEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNLLDRTPNEE
                     IDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVKCLSLKFEI
                     EIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSIT
                     YPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLG
                     KYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERT
                     TSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQ
                     LKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYI
                     YPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNR
                     SPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKT
                     GQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKF
                     FALVNALDEHMFPVRIGDMRIMENNLENELKSSIAALNSSQLEPVVRFLYLLLDKLIL
                     LVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASYIFYVFRLP
                     NTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDE
                     VRSIIGSKGLDRSNSWVNTGGPKAAPWGSNPSPSAESTQAMDRSCNRMSSHTETSSFL
                     QTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLD
                     APRKSRFPERFMDDIAALVSTIASDIVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRG
                     FVFSLIKTCYKQVSSKLYSLPTPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPAS
                     PSPSVSSATSQSSGFSTTVQDQKIANMFELSVPFRQQHYLAGLVLTELAVILDPDAEG
                     LFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTET
                     HNQRGRPICIATDDYESESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTF
                     SAESSRSLLICLLWVLKNADETVLQKWFTDLSVLQLNRLLDLLYLCVSCFEYKGKKVF
                     ERMNSLTFKKSKDMRAKLEEAILGSIGARQEMVRRSRGQLGMYTISSPSERSPSGSAF
                     GSQENLRWRKDMTHWRQNTEKLDKSRAEIEHEALIDGNLATEANLIILDTLEIVVQTV
                     SVTESKESILGGVLKVLLHSMACNQSAVYLQHCFATQRALVSKFPELLFEEETEQCAD
                     LCLRLLRHCSSSIGTIRSHASASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQN
                     FNEEFLRRSLKTILTYAEEDLELRETTFPDQVQDLVFNLHMILSDTVKMKEHQEDPEM
                     LIDLMYRIAKGYQTSPDLRLTWLQNMAGKHSERSNHAEAAQCLVHSAALVAEYLSMLE
                     DRKYLPVGCVTFQNISSNVLEESAVSDDVVSPDEEGICSGKYFTESGLVGLLEQAAAS
                     FSMAGMYEAVNEVYKVLIPIHEANRDAKKLSTIHGKLQEAFSKIVHQSTGWERMFGTY
                     FRVGFYGTKFGDLDEQEFVYKEPAITKLAEISHRLEGFYGERFGEDVVEVIKDSNPVD
                     KCKLDPNKAYIQITYVEPYFDTYEMKDRITYFDKNYNLRRFMYCTPFTLDGRAHGELH
                     EQFKRKTILTTSHAFPYIKTRVNVTHKEEIILTPIEVAIEDMQKKTQELAFATHQDPA
                     DPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPSDPKLFRHHNKLRLCFKDFTKRCED
                     ALRKNKSLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQLYKAVLPVTCHRDSFSR
                     MSLRKMDL"
     misc_feature    266..595
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    1790..2323
                     /gene="DOCK7"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; Region: C2_Dock-C; cd08696"
                     /db_xref="CDD:176078"
     misc_feature    5042..6466
                     /gene="DOCK7"
                     /note="Dock Homology Region 2, a GEF domain, of Class C
                     Dedicator of Cytokinesis 7; Region: DHR2_DOCK7; cd11703"
                     /db_xref="CDD:212576"
     misc_feature    order(5507..5509,5537..5539,5543..5548,5552..5557,
                     5564..5569,5573..5578,5585..5590)
                     /gene="DOCK7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212576"
     misc_feature    order(5633..5635,5639..5641,5708..5710,5717..5728,
                     5732..5737,5792..5800,5849..5857,5939..5950,5978..5983,
                     5990..5992,5996..5998,6107..6112,6119..6121,6167..6172,
                     6176..6181,6188..6196,6203..6211,6218..6223,6230..6232,
                     6314..6316,6380..6382,6389..6391)
                     /gene="DOCK7"
                     /note="Rac/Cdc42 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212576"
     misc_feature    6203..6220
                     /gene="DOCK7"
                     /note="nucleotide sensor; other site"
                     /db_xref="CDD:212576"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggg
     2881 tttagaccgc tccaattcct gggttaacac tggtggtcca aaagctgccc catggggatc
     2941 caaccccagt ccaagtgcag aatcaacaca ggctatggat cgaagttgta atcgtatgtc
     3001 ttcgcacaca gagacgtcaa gtttcttaca aacattaacg ggacgcttac caactaaaaa
     3061 gctatttcat gaggagctgg ctttgcagtg ggttgtttgc agtggcagcg ttcgggaatc
     3121 agctttgcaa caagcctggt tcttttttga gttaatggta aagagcatgg tgcaccattt
     3181 atactttaat gataaacttg atgcaccaag gaaaagtcgt tttccagaac gtttcatgga
     3241 tgacattgct gctcttgtca gcacaattgc tagtgatata gtttcacgat ttcagaagga
     3301 cacagaaatg gttgagagac tcaacacaag ccttgcattc tttctcaatg atctgttgtc
     3361 tgttatggac agaggatttg tgtttagcct tataaagacc tgctataaac aggtatcttc
     3421 aaagctttat tcattaccaa ctccaagtgt cttggtgtcc ctgaggctgg attttctgcg
     3481 catcatctgc agccatgagc actatgttac cttaaactta ccctgtagcc tgctaactcc
     3541 acctgcgtca ccatcacctt ctgtttcttc tgcaacatct cagagttctg gattttccac
     3601 cactgtgcaa gaccagaaga ttgcaaatat gtttgaattg tctgtgcctt tccgccagca
     3661 acattatttg gcaggacttg tgttaacaga gctggctgtc attttagatc ctgatgctga
     3721 aggactgttt ggattgcata agaaagtcat caatatggta cacaatttac tatccagtca
     3781 cgactcagac ccacggtact ctgaccccca gataaaggct cgggtggcta tgttgtatct
     3841 gcctctgatt ggcattatca tggaaactgt tcctcagctg tatgatttta cagaaactca
     3901 caatcaacga ggaagaccaa tctgtatagc caccgatgat tatgagagtg agagcggaag
     3961 catgataagc cagacagttg ccatggcaat tgcaggaaca tcagttcctc agctaacaag
     4021 gcccggcagt ttcctcctca catcaacgag tggcagacaa cacactacct tttcagcaga
     4081 atcaagtcgg agtcttttga tctgtctgct ttgggttctc aagaatgcag atgagacagt
     4141 tttacaaaag tggtttacag atctctcagt cctgcagcta aaccggctat tagatctgct
     4201 ttatctttgt gtatcttgct ttgaatacaa aggaaagaaa gtgtttgaaa gaatgaatag
     4261 tttgaccttt aagaaatcaa aggacatgag agcaaagctt gaggaagcta ttcttggaag
     4321 cataggtgct aggcaagaaa tggtgcgccg aagccgagga cagcttggta tgtacacaat
     4381 atcttctcct tctgagagaa gcccatctgg aagtgccttt gggagtcaag aaaatctgag
     4441 gtggaggaag gatatgactc actggcgtca aaacactgag aagcttgaca agtcaagagc
     4501 agagattgaa catgaagcac tgattgatgg aaatctggct actgaagcaa atctaatcat
     4561 tttggataca ttagagattg ttgtccagac agtttctgta acagaatcca aagagagcat
     4621 ccttggtggg gtgctgaaag tgctactaca tagcatggcc tgtaatcaaa gtgcagttta
     4681 tctacaacac tgttttgcta cccagagagc cctggtttca aagttccctg aactcttgtt
     4741 tgaagaggag acagagcagt gtgctgattt atgcctccgg cttctccggc actgtagcag
     4801 tagcatcggt acaatacggt cacatgctag tgcctccctt tacctactta tgagacagaa
     4861 ctttgagatt gggaataact ttgccagggt taaaatgcag gtaaccatgt cactgtcttc
     4921 cttggtgggc acatctcaga attttaatga agaattctta agacgttctc taaagactat
     4981 actgacatat gctgaagaag acttggaatt gagggagaca acatttcctg atcaggtcca
     5041 agatttggtt ttcaacctcc atatgatcct ttctgatact gttaaaatga aggaacacca
     5101 ggaggatcct gaaatgttga ttgatctaat gtacagaatt gccaaggggt accagacctc
     5161 tccagacctg cggctgacct ggttgcagaa catggctggc aaacactcag aacgcagcaa
     5221 tcatgctgaa gctgcccagt gcctcgttca ctcagcagca cttgttgctg aatatctgag
     5281 catgctggag gaccggaaat atcttcctgt gggatgtgta acatttcaga atatttcatc
     5341 taatgtttta gaagaatctg cagtctcaga tgatgtggta tctccagatg aagaaggtat
     5401 ctgctctgga aagtacttta ctgagtcagg acttgtggga ttactggaac aagcagctgc
     5461 ttctttctct atggctggca tgtatgaagc agttaacgag gtttacaaag tacttattcc
     5521 tattcatgaa gctaatcggg atgcaaagaa actatccacg attcatggta aacttcaaga
     5581 agcattcagc aaaattgttc atcagagtac tggctgggag cggatgtttg gcacctattt
     5641 tcgtgttggt ttttatggaa ccaagttcgg ggatttggat gaacaggaat ttgtttacaa
     5701 ggagcctgcg ataaccaaac ttgcagagat atctcacaga ttggagggat tttatggaga
     5761 aagatttgga gaggatgtgg ttgaagtaat caaggattct aatcctgtag acaagtgtaa
     5821 attagatcct aacaaggcat atattcagat tacctacgtg gagccatact ttgacacata
     5881 tgagatgaag gacagaatca catattttga caaaaattat aatcttcgtc gtttcatgta
     5941 ctgtacaccc ttcactttag atggtcgtgc ccatggggaa cttcatgaac aattcaaacg
     6001 gaagaccatt ctgactactt ctcatgcctt tccttacatt aagacaaggg ttaatgtcac
     6061 tcacaaagag gagatcatct taacaccaat tgaagttgct attgaagaca tgcagaaaaa
     6121 aacgcaggag ttggcatttg ccacacatca ggatccagca gaccccaaaa tgcttcagat
     6181 ggtactccag ggatctgtag gcacaacagt gaatcagggg cctttggaag ttgcccaggt
     6241 tttcctgtct gaaataccca gtgacccaaa gctcttcaga catcataata aactgcgact
     6301 ctgcttcaaa gattttacta aaaggtgtga ggatgcctta agaaaaaata agagcttaat
     6361 tgggccagat caaaaggagt atcaaaggga actggagaga aactatcatc gccttaaaga
     6421 ggccctacag cctctgataa acagaaagat ccctcagtta tacaaggcag tattacctgt
     6481 tacctgccac agggattcct tcagtcgaat gagcctgcgc aaaatggatc tctaatataa
     6541 atgcacttgt tttattcatt tgaaaaaagc catgtattca acattgagtg tgaaaagaat
     6601 ttaagaactt ttgaaaaaga cttgggactt aatcctggaa attgtagtat taatttactc
     6661 atggaagaat gcagtggcca aacaatatca aatggcgatc gctgaagttt gagaatcatg
     6721 gctgtggttt ctaatgttct ggtaatatgc tgttatcttt tttaagacat tttaatgact
     6781 cacaggtaca cttacattta ccattattta taccatagct aatgttaaat ttatttactt
     6841 taagtttgta ttttttaatt tatattacca tttatagatt cgttttggaa ccattttaaa
     6901 tgtagtaatt cttattttaa aggtactatt aaatatgtga atgtttacac taattttact
     6961 gagactaaaa aaaatttttt tactgacaaa agcagagaat aagttgattc aagaaacagt
     7021 tccaaaaata gcaaaatgaa aatcataatt gacactttat ggacccagat aatagcccca
     7081 aaattaaata aatgaataaa ttaatgggtg gaaataaatt attgataact ggtttgtaaa
     7141 gtcttaaaac tggtttctaa ggtattttcc atttaggcac acaaaaaagg gatttagaat
     7201 tgcagaagaa actttacgtg ataacttctg tctataaata acgattacat actgggatag
     7261 ctaataccag tgacagtggt ttgactctca acattatagt aatgatagta gtataagcag
     7321 acccgtagca actaaaatga atgattcctg ttttaaatta aacaagacag tcacttcatc
     7381 agtttttagt gtcctaaact ggtaaattag aaatctgctt taaatatacc ttacatcccc
     7441 ataaaaataa cagagagctg gtgtttgatt ttaatctgcc agctgaataa ggtatagtta
     7501 ttttttgata cttgtataga ttttacaaag tgtatgtata aaaggtaaaa ttagctgtta
     7561 attaagagct aattaatttt aaattgtaac tttatgatat gaaagactaa tgcaggtttt
     7621 tttccaacat atatttcaat tatttggcaa gtttttccaa gaagtgcata ttaatcattt
     7681 ctggaagtgt ttgaacattt ttttctttgt gcagtattgt atcttataga aaggtatcac
     7741 ttgtaatcta tccctttgat ctactgatca cttacatgaa tcacttaaga actgatcgaa
     7801 tatggtacct tcattctcct gagagcgtag atgtgacggc tgatattccc cgctccagcc
     7861 tacctttaca acaggcagta ttatctcaga ttcctcttat ctacatcaat tcaaagaccg
     7921 aatcacagaa agtttgtgag tctacaggtg gaccacaaca ggtgaactag gagtcagaaa
     7981 agcataacct caaaaatata tatttgggaa cagaggatcc agatggtcag taaggaaagg
     8041 cagagtcaag aacggaaact ctttaaagca aacagaaaag aaaaggtaac ttatttacat
     8101 actctcttcc tctttagggt gggggtgggg ggaagaatat taagtaattc ctaggtaatt
     8161 tctcataaag ttacacctgt gtaagagttt ggattgtcac ctatctcagg gacaatatca
     8221 agaactttaa gatttatata attacgattt aattatcaga ctaattaatt gtctgacgtg
     8281 aaatcagaag attcctctct taaaacactg gtgtaacatt tccttcctaa cttaccgtgt
     8341 tcttcaattt tcttaaaaca aactttctca tatcagaaat ctacactagt tcttaactag
     8401 tgtagttctg ggctgtctct tgagtgttac agagccctag ttctatccta gaactactcc
     8461 atcagaagct tatgagtagt gttcaaggct gtttcatttt aaaagttctg ttagtgactc
     8521 ctactccctc agctgcttat ggttagtgtt cagggctgtt cctttttaaa agttccatta
     8581 gtgatcctga acatagaaag tggcaaggac tgtgactttt tacatcacac catcttgtga
     8641 aagaatgtgt aagacattaa ctgtgtagtt tattagttga caggtactct ttcttatttg
     8701 ttaaagtagt gtataacagt attattccaa gagttatcta ttctttggaa ttatatttca
     8761 tattcttaat atcaagaatg tcctttaaca agtcataatc gatcatttac caatttaata
     8821 tatttaaagt gaaaatatga ccaagttttt tgtgtgccca aagcctcacc ttaagttctc
     8881 cagttttgga ttccatagtt atatgtctaa agggtatcta ggtatgacaa tttagatgga
     8941 ctaagcacaa tttctcctat ttgaaataca atttcttcac ctccaaatgt cagaaagtat
     9001 tattaaaggt aattatgcat gtttattctc ttctatgtat atatataata tgtgtgtata
     9061 gtatgtgtat atacacacac ttttttttaa gagaatccag ctatatttat ggtaaaaaat
     9121 atgcaagtaa aaaaatcctc aagcatttgt atacacagtt gttaagcagt ttaaatttta
     9181 ttgacctcct ggttttttta aaaaagttaa atttaaggtc acacctctaa gttcgatgca
     9241 ttatatacag atcgtgcaga gtatgactat gaagagatac aaattagtcc acactgaaaa
     9301 agatttacta gggtacagaa tcattttcat aaatacatat aaaattcttg tgaagataga
     9361 tagaagagga ctgactccag gttttctgag acgcttttca aagtgattga aggcacaaaa
     9421 tgtgcactat tgtgaataca tacacgtgcc tctaatacag cccatccaag atctggcttt
     9481 atgacttaca aaactaaatg tactgaaatg agattctgct tcttagctga aaaaccacag
     9541 aacctataaa catcatgtag atgataagta ctccaaaata tggagataca aatacaagca
     9601 ctttatttga aaaagcaaac acaaaagata ggtgtaaatt taaagtgttt aaatgcttcc
     9661 attttgaata attcagttaa gaacctatac aagtttgttc ccagaagcta atgcatcaat
     9721 cactagtctc cactaaggaa aatgaattct aaaaattaac atggatttca ataactcaaa
     9781 ttttactatt tatataaaaa cccagagaaa ccaataatac ccaatagctt caaaagataa
     9841 gctaaagact ttttgatgta atcaatttac cgatgtttgt ccaggtctgt ttaatatata
     9901 cacaaggaaa atacactcac tctataattt cttataaaat agcaagtaag gagtagatgt
     9961 aggagatgta gaaggggaaa gagaatttaa aaagtccttc tcttcagtaa ctttcacttc
    10021 agaatcatca aaaagcaacc acttcccctc atactccttt aagctttgca ctacatatga
    10081 aattttgttt tcaaaaccac tcatgttaat gcctgtttgg tcattggatt ccttgtttct
    10141 atcagattca tgggtcccat tagtattgtt agtctcagaa tttctatttt cagcaaatgc
    10201 tgtactggca actttatcag gattagatgc tttgttgtat aactcataat ctgctttact
    10261 cttttgtcct ccaagaagtc caatagcttc tacatttttt ttgttcaaaa ctttacttgg
    10321 ctgggtattt ccactgactc taatcgacac ttcttcatcg tcatagtttt cgaccacacc
    10381 ccttgcttcc tcctcattca atggttctgg cttacctatt tcacacattt ggtcgatcac
    10441 aaaattttcc ttatctagtt ctaaactgtt aaggtcagtg actttaacag aagcagtata
    10501 atgcccacta ctaattgtaa tgccactatg catcacaact gcaaataatc catagctgtc
    10561 gttggttggc tttgtgctcc attcttctag tgacagttta agaggtgtca gtaaaggagt
    10621 gttgatcttg gaaagtccac caccataaca atcaaa
//
LOCUS       XM_032648480            7248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X2, mRNA.
ACCESSION   XM_032648480
VERSION     XM_032648480.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7248
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116761951"
     CDS             113..6508
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X2"
                     /protein_id="XP_032504371.1"
                     /db_xref="GeneID:116761951"
                     /translation="MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGSIS
                     HHTTVPLTEAVDPVDLEDYLITHPLAVDSGLLRDLIEFPPDDIEVVYSPRDCRTLVSA
                     VPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFES
                     DEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNLLDRTPNEE
                     IDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVKCLSLKFEI
                     EIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSIT
                     YPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLG
                     KYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERT
                     TSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQ
                     LKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYI
                     YPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNR
                     SPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKT
                     GQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKF
                     FALVNALDEHMFPVRIGDMRIMENNLENELKSSIAALNSSQLEPVVRFLYLLLDKLIL
                     LVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASYIFYVFRLP
                     NTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDE
                     VRSIIGSKGLDRSNSWVNTGGPKAAPWGSNPSPSAESTQAMDRSCNRMSSHTETSSFL
                     QTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLD
                     APRKSRFPERFMDDIAALVSTIASDIVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRG
                     FVFSLIKTCYKQVSSKLYSLPTPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPAS
                     PSPSVSSATSQSSGFSTTVQDQKIANMFELSVPFRQQHYLAGLVLTELAVILDPDAEG
                     LFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTET
                     HNQRGRPICIATDDYESESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTF
                     SAESSRSLLICLLWVLKNADETVLQKWFTDLSVLQLNRLLDLLYLCVSCFEYKGKKVF
                     ERMNSLTFKKSKDMRAKLEEAILGSIGARQEMVRRSRGQLERSPSGSAFGSQENLRWR
                     KDMTHWRQNTEKLDKSRAEIEHEALIDGNLATEANLIILDTLEIVVQTVSVTESKESI
                     LGGVLKVLLHSMACNQSAVYLQHCFATQRALVSKFPELLFEEETEQCADLCLRLLRHC
                     SSSIGTIRSHASASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRS
                     LKTILTYAEEDLELRETTFPDQVQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIA
                     KGYQTSPDLRLTWLQNMAGKHSERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGC
                     VTFQNISSNVLEESAVSDDVVSPDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEA
                     VNEVYKVLIPIHEANRDAKKLSTIHGKLQEAFSKIVHQSTGWERMFGTYFRVGFYGTK
                     FGDLDEQEFVYKEPAITKLAEISHRLEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKA
                     YIQITYVEPYFDTYEMKDRITYFDKNYNLRRFMYCTPFTLDGRAHGELHEQFKRKTIL
                     TTSHAFPYIKTRVNVTHKEEIILTPIEVAIEDMQKKTQELAFATHQDPADPKMLQMVL
                     QGSVGTTVNQGPLEVAQVFLSEIPSDPKLFRHHNKLRLCFKDFTKRCEDALRKNKSLI
                     GPDQKEYQRELERNYHRLKEALQPLINRKIPQLYKAVLPVTCHRDSFSRMSLRKMDL"
     misc_feature    266..595
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    1790..2323
                     /gene="DOCK7"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; Region: C2_Dock-C; cd08696"
                     /db_xref="CDD:176078"
     misc_feature    5015..6439
                     /gene="DOCK7"
                     /note="Dock Homology Region 2, a GEF domain, of Class C
                     Dedicator of Cytokinesis 7; Region: DHR2_DOCK7; cd11703"
                     /db_xref="CDD:212576"
     misc_feature    order(5480..5482,5510..5512,5516..5521,5525..5530,
                     5537..5542,5546..5551,5558..5563)
                     /gene="DOCK7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212576"
     misc_feature    order(5606..5608,5612..5614,5681..5683,5690..5701,
                     5705..5710,5765..5773,5822..5830,5912..5923,5951..5956,
                     5963..5965,5969..5971,6080..6085,6092..6094,6140..6145,
                     6149..6154,6161..6169,6176..6184,6191..6196,6203..6205,
                     6287..6289,6353..6355,6362..6364)
                     /gene="DOCK7"
                     /note="Rac/Cdc42 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212576"
     misc_feature    6176..6193
                     /gene="DOCK7"
                     /note="nucleotide sensor; other site"
                     /db_xref="CDD:212576"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggg
     2881 tttagaccgc tccaattcct gggttaacac tggtggtcca aaagctgccc catggggatc
     2941 caaccccagt ccaagtgcag aatcaacaca ggctatggat cgaagttgta atcgtatgtc
     3001 ttcgcacaca gagacgtcaa gtttcttaca aacattaacg ggacgcttac caactaaaaa
     3061 gctatttcat gaggagctgg ctttgcagtg ggttgtttgc agtggcagcg ttcgggaatc
     3121 agctttgcaa caagcctggt tcttttttga gttaatggta aagagcatgg tgcaccattt
     3181 atactttaat gataaacttg atgcaccaag gaaaagtcgt tttccagaac gtttcatgga
     3241 tgacattgct gctcttgtca gcacaattgc tagtgatata gtttcacgat ttcagaagga
     3301 cacagaaatg gttgagagac tcaacacaag ccttgcattc tttctcaatg atctgttgtc
     3361 tgttatggac agaggatttg tgtttagcct tataaagacc tgctataaac aggtatcttc
     3421 aaagctttat tcattaccaa ctccaagtgt cttggtgtcc ctgaggctgg attttctgcg
     3481 catcatctgc agccatgagc actatgttac cttaaactta ccctgtagcc tgctaactcc
     3541 acctgcgtca ccatcacctt ctgtttcttc tgcaacatct cagagttctg gattttccac
     3601 cactgtgcaa gaccagaaga ttgcaaatat gtttgaattg tctgtgcctt tccgccagca
     3661 acattatttg gcaggacttg tgttaacaga gctggctgtc attttagatc ctgatgctga
     3721 aggactgttt ggattgcata agaaagtcat caatatggta cacaatttac tatccagtca
     3781 cgactcagac ccacggtact ctgaccccca gataaaggct cgggtggcta tgttgtatct
     3841 gcctctgatt ggcattatca tggaaactgt tcctcagctg tatgatttta cagaaactca
     3901 caatcaacga ggaagaccaa tctgtatagc caccgatgat tatgagagtg agagcggaag
     3961 catgataagc cagacagttg ccatggcaat tgcaggaaca tcagttcctc agctaacaag
     4021 gcccggcagt ttcctcctca catcaacgag tggcagacaa cacactacct tttcagcaga
     4081 atcaagtcgg agtcttttga tctgtctgct ttgggttctc aagaatgcag atgagacagt
     4141 tttacaaaag tggtttacag atctctcagt cctgcagcta aaccggctat tagatctgct
     4201 ttatctttgt gtatcttgct ttgaatacaa aggaaagaaa gtgtttgaaa gaatgaatag
     4261 tttgaccttt aagaaatcaa aggacatgag agcaaagctt gaggaagcta ttcttggaag
     4321 cataggtgct aggcaagaaa tggtgcgccg aagccgagga cagcttgaga gaagcccatc
     4381 tggaagtgcc tttgggagtc aagaaaatct gaggtggagg aaggatatga ctcactggcg
     4441 tcaaaacact gagaagcttg acaagtcaag agcagagatt gaacatgaag cactgattga
     4501 tggaaatctg gctactgaag caaatctaat cattttggat acattagaga ttgttgtcca
     4561 gacagtttct gtaacagaat ccaaagagag catccttggt ggggtgctga aagtgctact
     4621 acatagcatg gcctgtaatc aaagtgcagt ttatctacaa cactgttttg ctacccagag
     4681 agccctggtt tcaaagttcc ctgaactctt gtttgaagag gagacagagc agtgtgctga
     4741 tttatgcctc cggcttctcc ggcactgtag cagtagcatc ggtacaatac ggtcacatgc
     4801 tagtgcctcc ctttacctac ttatgagaca gaactttgag attgggaata actttgccag
     4861 ggttaaaatg caggtaacca tgtcactgtc ttccttggtg ggcacatctc agaattttaa
     4921 tgaagaattc ttaagacgtt ctctaaagac tatactgaca tatgctgaag aagacttgga
     4981 attgagggag acaacatttc ctgatcaggt ccaagatttg gttttcaacc tccatatgat
     5041 cctttctgat actgttaaaa tgaaggaaca ccaggaggat cctgaaatgt tgattgatct
     5101 aatgtacaga attgccaagg ggtaccagac ctctccagac ctgcggctga cctggttgca
     5161 gaacatggct ggcaaacact cagaacgcag caatcatgct gaagctgccc agtgcctcgt
     5221 tcactcagca gcacttgttg ctgaatatct gagcatgctg gaggaccgga aatatcttcc
     5281 tgtgggatgt gtaacatttc agaatatttc atctaatgtt ttagaagaat ctgcagtctc
     5341 agatgatgtg gtatctccag atgaagaagg tatctgctct ggaaagtact ttactgagtc
     5401 aggacttgtg ggattactgg aacaagcagc tgcttctttc tctatggctg gcatgtatga
     5461 agcagttaac gaggtttaca aagtacttat tcctattcat gaagctaatc gggatgcaaa
     5521 gaaactatcc acgattcatg gtaaacttca agaagcattc agcaaaattg ttcatcagag
     5581 tactggctgg gagcggatgt ttggcaccta ttttcgtgtt ggtttttatg gaaccaagtt
     5641 cggggatttg gatgaacagg aatttgttta caaggagcct gcgataacca aacttgcaga
     5701 gatatctcac agattggagg gattttatgg agaaagattt ggagaggatg tggttgaagt
     5761 aatcaaggat tctaatcctg tagacaagtg taaattagat cctaacaagg catatattca
     5821 gattacctac gtggagccat actttgacac atatgagatg aaggacagaa tcacatattt
     5881 tgacaaaaat tataatcttc gtcgtttcat gtactgtaca cccttcactt tagatggtcg
     5941 tgcccatggg gaacttcatg aacaattcaa acggaagacc attctgacta cttctcatgc
     6001 ctttccttac attaagacaa gggttaatgt cactcacaaa gaggagatca tcttaacacc
     6061 aattgaagtt gctattgaag acatgcagaa aaaaacgcag gagttggcat ttgccacaca
     6121 tcaggatcca gcagacccca aaatgcttca gatggtactc cagggatctg taggcacaac
     6181 agtgaatcag gggcctttgg aagttgccca ggttttcctg tctgaaatac ccagtgaccc
     6241 aaagctcttc agacatcata ataaactgcg actctgcttc aaagatttta ctaaaaggtg
     6301 tgaggatgcc ttaagaaaaa ataagagctt aattgggcca gatcaaaagg agtatcaaag
     6361 ggaactggag agaaactatc atcgccttaa agaggcccta cagcctctga taaacagaaa
     6421 gatccctcag ttatacaagg cagtattacc tgttacctgc cacagggatt ccttcagtcg
     6481 aatgagcctg cgcaaaatgg atctctaata taaatgcact tgttttattc atttgaaaaa
     6541 agccatgtat tcaacattga gtgtgaaaag aatttaagaa cttttgaaaa agacttggga
     6601 cttaatcctg gaaattgtag tattaattta ctcatggaag aatgcagtgg ccaaacaata
     6661 tcaaatggcg atcgctgaag tttgagaatc atggctgtgg tttctaatgt tctggtaata
     6721 tgctgttatc ttttttaaga cattttaatg actcacaggt acacttacat ttaccattat
     6781 ttataccata gctaatgtta aatttattta ctttaagttt gtatttttta atttatatta
     6841 ccatttatag attcgttttg gaaccatttt aaatgtagta attcttattt taaaggtact
     6901 attaaatatg tgaatgttta cactaatttt actgagacta aaaaaaattt ttttactgac
     6961 aaaagcagag aataagttga ttcaagaaac agttccaaaa atagcaaaat gaaaatcata
     7021 attgacactt tatggaccca gataatagcc ccaaaattaa ataaatgaat aaattaatgg
     7081 gtggaaataa attattgata actggtttgt aaagtcttaa aactggtttc taaggtattt
     7141 tccatttagg cacacaaaaa agggatttag aattgcagaa gaaactttac gtgataactt
     7201 ctgtctataa ataacgatta catactggga tagctaatac cagtgaca
//
LOCUS       XM_032648489           10623 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X3, mRNA.
ACCESSION   XM_032648489
VERSION     XM_032648489.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10623
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10623
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 42 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116761951"
     CDS             113..6502
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X3"
                     /protein_id="XP_032504380.1"
                     /db_xref="GeneID:116761951"
                     /translation="MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGSIS
                     HHTTVPLTEAVDPVDLEDYLITHPLAVDSGLLRDLIEFPPDDIEVVYSPRDCRTLVSA
                     VPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFES
                     DEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNLLDRTPNEE
                     IDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVKCLSLKFEI
                     EIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSIT
                     YPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLG
                     KYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERT
                     TSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQ
                     LKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYI
                     YPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNR
                     SPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKT
                     GQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKF
                     FALVNALDEHMFPVRIGDMRIMENNLENELKSSIAALNSSQLEPVVRFLYLLLDKLIL
                     LVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASYIFYVFRLP
                     NTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDE
                     VRSIIGSKGLDRSNSWVNTGGPKAAPWGSNPSPSAESTQAMDRSCNRMSSHTETSSFL
                     QTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLD
                     APRKSRFPERFMDDIAALVSTIASDIVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRG
                     FVFSLIKTCYKQVSSKLYSLPTPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPAS
                     PSPSVSSATSQSSGFSTTVQDQKIANMFELSVPFRQQHYLAGLVLTELAVILDPDAEG
                     LFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTET
                     HNQRGRPICIATDDYESESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTF
                     SAESSRSLLICLLWVLKNADETVLQKWFTDLSVLQLNRLLDLLYLCVSCFEYKGKKVF
                     ERMNSLTFKKSKDMRAKLEEAILGSIGARQEMVRRSRGQLERSPSGSAFGSQENLRWR
                     KDMTHWRQNTEKLDKSRAEIEHEALIDGNLATEANLIILDTLEIVVQTVSVTESKESI
                     LGGVLKVLLHSMACNQSAVYLQHCFATQRALVSKFPELLFEEETEQCADLCLRLLRHC
                     SSSIGTIRSHASASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRS
                     LKTILTYAEEDLELRETTFPDQVQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIA
                     KGYQTSPDLRLTWLQNMAGKHSERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGC
                     VTFQNISSNVLEESAVSDDVVSPDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEA
                     VNEVYKVLIPIHEANRDAKKLSTIHGKLQEAFSKIVHQDGKRMFGTYFRVGFYGTKFG
                     DLDEQEFVYKEPAITKLAEISHRLEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKAYI
                     QITYVEPYFDTYEMKDRITYFDKNYNLRRFMYCTPFTLDGRAHGELHEQFKRKTILTT
                     SHAFPYIKTRVNVTHKEEIILTPIEVAIEDMQKKTQELAFATHQDPADPKMLQMVLQG
                     SVGTTVNQGPLEVAQVFLSEIPSDPKLFRHHNKLRLCFKDFTKRCEDALRKNKSLIGP
                     DQKEYQRELERNYHRLKEALQPLINRKIPQLYKAVLPVTCHRDSFSRMSLRKMDL"
     misc_feature    266..595
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    1790..2323
                     /gene="DOCK7"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; Region: C2_Dock-C; cd08696"
                     /db_xref="CDD:176078"
     misc_feature    5015..6433
                     /gene="DOCK7"
                     /note="Dock Homology Region 2, a GEF domain, of Class C
                     Dedicator of Cytokinesis 7; Region: DHR2_DOCK7; cd11703"
                     /db_xref="CDD:212576"
     misc_feature    order(5480..5482,5510..5512,5516..5521,5525..5530,
                     5537..5542,5546..5551,5558..5563)
                     /gene="DOCK7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212576"
     misc_feature    order(5600..5602,5606..5608,5675..5677,5684..5695,
                     5699..5704,5759..5767,5816..5824,5906..5917,5945..5950,
                     5957..5959,5963..5965,6074..6079,6086..6088,6134..6139,
                     6143..6148,6155..6163,6170..6178,6185..6190,6197..6199,
                     6281..6283,6347..6349,6356..6358)
                     /gene="DOCK7"
                     /note="Rac/Cdc42 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212576"
     misc_feature    6170..6187
                     /gene="DOCK7"
                     /note="nucleotide sensor; other site"
                     /db_xref="CDD:212576"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggg
     2881 tttagaccgc tccaattcct gggttaacac tggtggtcca aaagctgccc catggggatc
     2941 caaccccagt ccaagtgcag aatcaacaca ggctatggat cgaagttgta atcgtatgtc
     3001 ttcgcacaca gagacgtcaa gtttcttaca aacattaacg ggacgcttac caactaaaaa
     3061 gctatttcat gaggagctgg ctttgcagtg ggttgtttgc agtggcagcg ttcgggaatc
     3121 agctttgcaa caagcctggt tcttttttga gttaatggta aagagcatgg tgcaccattt
     3181 atactttaat gataaacttg atgcaccaag gaaaagtcgt tttccagaac gtttcatgga
     3241 tgacattgct gctcttgtca gcacaattgc tagtgatata gtttcacgat ttcagaagga
     3301 cacagaaatg gttgagagac tcaacacaag ccttgcattc tttctcaatg atctgttgtc
     3361 tgttatggac agaggatttg tgtttagcct tataaagacc tgctataaac aggtatcttc
     3421 aaagctttat tcattaccaa ctccaagtgt cttggtgtcc ctgaggctgg attttctgcg
     3481 catcatctgc agccatgagc actatgttac cttaaactta ccctgtagcc tgctaactcc
     3541 acctgcgtca ccatcacctt ctgtttcttc tgcaacatct cagagttctg gattttccac
     3601 cactgtgcaa gaccagaaga ttgcaaatat gtttgaattg tctgtgcctt tccgccagca
     3661 acattatttg gcaggacttg tgttaacaga gctggctgtc attttagatc ctgatgctga
     3721 aggactgttt ggattgcata agaaagtcat caatatggta cacaatttac tatccagtca
     3781 cgactcagac ccacggtact ctgaccccca gataaaggct cgggtggcta tgttgtatct
     3841 gcctctgatt ggcattatca tggaaactgt tcctcagctg tatgatttta cagaaactca
     3901 caatcaacga ggaagaccaa tctgtatagc caccgatgat tatgagagtg agagcggaag
     3961 catgataagc cagacagttg ccatggcaat tgcaggaaca tcagttcctc agctaacaag
     4021 gcccggcagt ttcctcctca catcaacgag tggcagacaa cacactacct tttcagcaga
     4081 atcaagtcgg agtcttttga tctgtctgct ttgggttctc aagaatgcag atgagacagt
     4141 tttacaaaag tggtttacag atctctcagt cctgcagcta aaccggctat tagatctgct
     4201 ttatctttgt gtatcttgct ttgaatacaa aggaaagaaa gtgtttgaaa gaatgaatag
     4261 tttgaccttt aagaaatcaa aggacatgag agcaaagctt gaggaagcta ttcttggaag
     4321 cataggtgct aggcaagaaa tggtgcgccg aagccgagga cagcttgaga gaagcccatc
     4381 tggaagtgcc tttgggagtc aagaaaatct gaggtggagg aaggatatga ctcactggcg
     4441 tcaaaacact gagaagcttg acaagtcaag agcagagatt gaacatgaag cactgattga
     4501 tggaaatctg gctactgaag caaatctaat cattttggat acattagaga ttgttgtcca
     4561 gacagtttct gtaacagaat ccaaagagag catccttggt ggggtgctga aagtgctact
     4621 acatagcatg gcctgtaatc aaagtgcagt ttatctacaa cactgttttg ctacccagag
     4681 agccctggtt tcaaagttcc ctgaactctt gtttgaagag gagacagagc agtgtgctga
     4741 tttatgcctc cggcttctcc ggcactgtag cagtagcatc ggtacaatac ggtcacatgc
     4801 tagtgcctcc ctttacctac ttatgagaca gaactttgag attgggaata actttgccag
     4861 ggttaaaatg caggtaacca tgtcactgtc ttccttggtg ggcacatctc agaattttaa
     4921 tgaagaattc ttaagacgtt ctctaaagac tatactgaca tatgctgaag aagacttgga
     4981 attgagggag acaacatttc ctgatcaggt ccaagatttg gttttcaacc tccatatgat
     5041 cctttctgat actgttaaaa tgaaggaaca ccaggaggat cctgaaatgt tgattgatct
     5101 aatgtacaga attgccaagg ggtaccagac ctctccagac ctgcggctga cctggttgca
     5161 gaacatggct ggcaaacact cagaacgcag caatcatgct gaagctgccc agtgcctcgt
     5221 tcactcagca gcacttgttg ctgaatatct gagcatgctg gaggaccgga aatatcttcc
     5281 tgtgggatgt gtaacatttc agaatatttc atctaatgtt ttagaagaat ctgcagtctc
     5341 agatgatgtg gtatctccag atgaagaagg tatctgctct ggaaagtact ttactgagtc
     5401 aggacttgtg ggattactgg aacaagcagc tgcttctttc tctatggctg gcatgtatga
     5461 agcagttaac gaggtttaca aagtacttat tcctattcat gaagctaatc gggatgcaaa
     5521 gaaactatcc acgattcatg gtaaacttca agaagcattc agcaaaattg ttcatcagga
     5581 tggtaagcgg atgtttggca cctattttcg tgttggtttt tatggaacca agttcgggga
     5641 tttggatgaa caggaatttg tttacaagga gcctgcgata accaaacttg cagagatatc
     5701 tcacagattg gagggatttt atggagaaag atttggagag gatgtggttg aagtaatcaa
     5761 ggattctaat cctgtagaca agtgtaaatt agatcctaac aaggcatata ttcagattac
     5821 ctacgtggag ccatactttg acacatatga gatgaaggac agaatcacat attttgacaa
     5881 aaattataat cttcgtcgtt tcatgtactg tacacccttc actttagatg gtcgtgccca
     5941 tggggaactt catgaacaat tcaaacggaa gaccattctg actacttctc atgcctttcc
     6001 ttacattaag acaagggtta atgtcactca caaagaggag atcatcttaa caccaattga
     6061 agttgctatt gaagacatgc agaaaaaaac gcaggagttg gcatttgcca cacatcagga
     6121 tccagcagac cccaaaatgc ttcagatggt actccaggga tctgtaggca caacagtgaa
     6181 tcaggggcct ttggaagttg cccaggtttt cctgtctgaa atacccagtg acccaaagct
     6241 cttcagacat cataataaac tgcgactctg cttcaaagat tttactaaaa ggtgtgagga
     6301 tgccttaaga aaaaataaga gcttaattgg gccagatcaa aaggagtatc aaagggaact
     6361 ggagagaaac tatcatcgcc ttaaagaggc cctacagcct ctgataaaca gaaagatccc
     6421 tcagttatac aaggcagtat tacctgttac ctgccacagg gattccttca gtcgaatgag
     6481 cctgcgcaaa atggatctct aatataaatg cacttgtttt attcatttga aaaaagccat
     6541 gtattcaaca ttgagtgtga aaagaattta agaacttttg aaaaagactt gggacttaat
     6601 cctggaaatt gtagtattaa tttactcatg gaagaatgca gtggccaaac aatatcaaat
     6661 ggcgatcgct gaagtttgag aatcatggct gtggtttcta atgttctggt aatatgctgt
     6721 tatctttttt aagacatttt aatgactcac aggtacactt acatttacca ttatttatac
     6781 catagctaat gttaaattta tttactttaa gtttgtattt tttaatttat attaccattt
     6841 atagattcgt tttggaacca ttttaaatgt agtaattctt attttaaagg tactattaaa
     6901 tatgtgaatg tttacactaa ttttactgag actaaaaaaa atttttttac tgacaaaagc
     6961 agagaataag ttgattcaag aaacagttcc aaaaatagca aaatgaaaat cataattgac
     7021 actttatgga cccagataat agccccaaaa ttaaataaat gaataaatta atgggtggaa
     7081 ataaattatt gataactggt ttgtaaagtc ttaaaactgg tttctaaggt attttccatt
     7141 taggcacaca aaaaagggat ttagaattgc agaagaaact ttacgtgata acttctgtct
     7201 ataaataacg attacatact gggatagcta ataccagtga cagtggtttg actctcaaca
     7261 ttatagtaat gatagtagta taagcagacc cgtagcaact aaaatgaatg attcctgttt
     7321 taaattaaac aagacagtca cttcatcagt ttttagtgtc ctaaactggt aaattagaaa
     7381 tctgctttaa atatacctta catccccata aaaataacag agagctggtg tttgatttta
     7441 atctgccagc tgaataaggt atagttattt tttgatactt gtatagattt tacaaagtgt
     7501 atgtataaaa ggtaaaatta gctgttaatt aagagctaat taattttaaa ttgtaacttt
     7561 atgatatgaa agactaatgc aggttttttt ccaacatata tttcaattat ttggcaagtt
     7621 tttccaagaa gtgcatatta atcatttctg gaagtgtttg aacatttttt tctttgtgca
     7681 gtattgtatc ttatagaaag gtatcacttg taatctatcc ctttgatcta ctgatcactt
     7741 acatgaatca cttaagaact gatcgaatat ggtaccttca ttctcctgag agcgtagatg
     7801 tgacggctga tattccccgc tccagcctac ctttacaaca ggcagtatta tctcagattc
     7861 ctcttatcta catcaattca aagaccgaat cacagaaagt ttgtgagtct acaggtggac
     7921 cacaacaggt gaactaggag tcagaaaagc ataacctcaa aaatatatat ttgggaacag
     7981 aggatccaga tggtcagtaa ggaaaggcag agtcaagaac ggaaactctt taaagcaaac
     8041 agaaaagaaa aggtaactta tttacatact ctcttcctct ttagggtggg ggtgggggga
     8101 agaatattaa gtaattccta ggtaatttct cataaagtta cacctgtgta agagtttgga
     8161 ttgtcaccta tctcagggac aatatcaaga actttaagat ttatataatt acgatttaat
     8221 tatcagacta attaattgtc tgacgtgaaa tcagaagatt cctctcttaa aacactggtg
     8281 taacatttcc ttcctaactt accgtgttct tcaattttct taaaacaaac tttctcatat
     8341 cagaaatcta cactagttct taactagtgt agttctgggc tgtctcttga gtgttacaga
     8401 gccctagttc tatcctagaa ctactccatc agaagcttat gagtagtgtt caaggctgtt
     8461 tcattttaaa agttctgtta gtgactccta ctccctcagc tgcttatggt tagtgttcag
     8521 ggctgttcct ttttaaaagt tccattagtg atcctgaaca tagaaagtgg caaggactgt
     8581 gactttttac atcacaccat cttgtgaaag aatgtgtaag acattaactg tgtagtttat
     8641 tagttgacag gtactctttc ttatttgtta aagtagtgta taacagtatt attccaagag
     8701 ttatctattc tttggaatta tatttcatat tcttaatatc aagaatgtcc tttaacaagt
     8761 cataatcgat catttaccaa tttaatatat ttaaagtgaa aatatgacca agttttttgt
     8821 gtgcccaaag cctcacctta agttctccag ttttggattc catagttata tgtctaaagg
     8881 gtatctaggt atgacaattt agatggacta agcacaattt ctcctatttg aaatacaatt
     8941 tcttcacctc caaatgtcag aaagtattat taaaggtaat tatgcatgtt tattctcttc
     9001 tatgtatata tataatatgt gtgtatagta tgtgtatata cacacacttt tttttaagag
     9061 aatccagcta tatttatggt aaaaaatatg caagtaaaaa aatcctcaag catttgtata
     9121 cacagttgtt aagcagttta aattttattg acctcctggt ttttttaaaa aagttaaatt
     9181 taaggtcaca cctctaagtt cgatgcatta tatacagatc gtgcagagta tgactatgaa
     9241 gagatacaaa ttagtccaca ctgaaaaaga tttactaggg tacagaatca ttttcataaa
     9301 tacatataaa attcttgtga agatagatag aagaggactg actccaggtt ttctgagacg
     9361 cttttcaaag tgattgaagg cacaaaatgt gcactattgt gaatacatac acgtgcctct
     9421 aatacagccc atccaagatc tggctttatg acttacaaaa ctaaatgtac tgaaatgaga
     9481 ttctgcttct tagctgaaaa accacagaac ctataaacat catgtagatg ataagtactc
     9541 caaaatatgg agatacaaat acaagcactt tatttgaaaa agcaaacaca aaagataggt
     9601 gtaaatttaa agtgtttaaa tgcttccatt ttgaataatt cagttaagaa cctatacaag
     9661 tttgttccca gaagctaatg catcaatcac tagtctccac taaggaaaat gaattctaaa
     9721 aattaacatg gatttcaata actcaaattt tactatttat ataaaaaccc agagaaacca
     9781 ataataccca atagcttcaa aagataagct aaagactttt tgatgtaatc aatttaccga
     9841 tgtttgtcca ggtctgttta atatatacac aaggaaaata cactcactct ataatttctt
     9901 ataaaatagc aagtaaggag tagatgtagg agatgtagaa ggggaaagag aatttaaaaa
     9961 gtccttctct tcagtaactt tcacttcaga atcatcaaaa agcaaccact tcccctcata
    10021 ctcctttaag ctttgcacta catatgaaat tttgttttca aaaccactca tgttaatgcc
    10081 tgtttggtca ttggattcct tgtttctatc agattcatgg gtcccattag tattgttagt
    10141 ctcagaattt ctattttcag caaatgctgt actggcaact ttatcaggat tagatgcttt
    10201 gttgtataac tcataatctg ctttactctt ttgtcctcca agaagtccaa tagcttctac
    10261 attttttttg ttcaaaactt tacttggctg ggtatttcca ctgactctaa tcgacacttc
    10321 ttcatcgtca tagttttcga ccacacccct tgcttcctcc tcattcaatg gttctggctt
    10381 acctatttca cacatttggt cgatcacaaa attttcctta tctagttcta aactgttaag
    10441 gtcagtgact ttaacagaag cagtataatg cccactacta attgtaatgc cactatgcat
    10501 cacaactgca aataatccat agctgtcgtt ggttggcttt gtgctccatt cttctagtga
    10561 cagtttaaga ggtgtcagta aaggagtgtt gatcttggaa agtccaccac cataacaatc
    10621 aaa
//
LOCUS       XM_032648498            7182 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X4, mRNA.
ACCESSION   XM_032648498
VERSION     XM_032648498.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7182
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7182
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761951"
     CDS             113..6442
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X4"
                     /protein_id="XP_032504389.1"
                     /db_xref="GeneID:116761951"
                     /translation="MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGSIS
                     HHTTVPLTEAVDPVDLEDYLITHPLAVDSGLLRDLIEFPPDDIEVVYSPRDCRTLVSA
                     VPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFES
                     DEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNLLDRTPNEE
                     IDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVKCLSLKFEI
                     EIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSIT
                     YPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLG
                     KYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERT
                     TSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQ
                     LKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYI
                     YPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNR
                     SPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKT
                     GQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKF
                     FALVNALDEHMFPVRIGDMRIMENNLENELKSSIAALNSSQLEPVVRFLYLLLDKLIL
                     LVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASYIFYVFRLP
                     NTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDE
                     VRSIIGSKAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRES
                     ALQQAWFFFELMVKSMVHHLYFNDKLDAPRKSRFPERFMDDIAALVSTIASDIVSRFQ
                     KDTEMVERLNTSLAFFLNDLLSVMDRGFVFSLIKTCYKQVSSKLYSLPTPSVLVSLRL
                     DFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTTVQDQKIANMFELS
                     VPFRQQHYLAGLVLTELAVILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIK
                     ARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIATDDYESESGSMISQTVAMAI
                     AGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDL
                     SVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQE
                     MVRRSRGQLGMYTISSPSERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEH
                     EALIDGNLATEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLHSMACNQSAVYLQ
                     HCFATQRALVSKFPELLFEEETEQCADLCLRLLRHCSSSIGTIRSHASASLYLLMRQN
                     FEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQ
                     VQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHS
                     ERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVS
                     PDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLS
                     TIHGKLQEAFSKIVHQSTGWERMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEI
                     SHRLEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPYFDTYEMKDRITY
                     FDKNYNLRRFMYCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEII
                     LTPIEVAIEDMQKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSE
                     IPSDPKLFRHHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEAL
                     QPLINRKIPQLYKAVLPVTCHRDSFSRMSLRKMDL"
     misc_feature    266..595
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    1790..2323
                     /gene="DOCK7"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; Region: C2_Dock-C; cd08696"
                     /db_xref="CDD:176078"
     misc_feature    4949..6373
                     /gene="DOCK7"
                     /note="Dock Homology Region 2, a GEF domain, of Class C
                     Dedicator of Cytokinesis 7; Region: DHR2_DOCK7; cd11703"
                     /db_xref="CDD:212576"
     misc_feature    order(5414..5416,5444..5446,5450..5455,5459..5464,
                     5471..5476,5480..5485,5492..5497)
                     /gene="DOCK7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212576"
     misc_feature    order(5540..5542,5546..5548,5615..5617,5624..5635,
                     5639..5644,5699..5707,5756..5764,5846..5857,5885..5890,
                     5897..5899,5903..5905,6014..6019,6026..6028,6074..6079,
                     6083..6088,6095..6103,6110..6118,6125..6130,6137..6139,
                     6221..6223,6287..6289,6296..6298)
                     /gene="DOCK7"
                     /note="Rac/Cdc42 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212576"
     misc_feature    6110..6127
                     /gene="DOCK7"
                     /note="nucleotide sensor; other site"
                     /db_xref="CDD:212576"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggc
     2881 tatggatcga agttgtaatc gtatgtcttc gcacacagag acgtcaagtt tcttacaaac
     2941 attaacggga cgcttaccaa ctaaaaagct atttcatgag gagctggctt tgcagtgggt
     3001 tgtttgcagt ggcagcgttc gggaatcagc tttgcaacaa gcctggttct tttttgagtt
     3061 aatggtaaag agcatggtgc accatttata ctttaatgat aaacttgatg caccaaggaa
     3121 aagtcgtttt ccagaacgtt tcatggatga cattgctgct cttgtcagca caattgctag
     3181 tgatatagtt tcacgatttc agaaggacac agaaatggtt gagagactca acacaagcct
     3241 tgcattcttt ctcaatgatc tgttgtctgt tatggacaga ggatttgtgt ttagccttat
     3301 aaagacctgc tataaacagg tatcttcaaa gctttattca ttaccaactc caagtgtctt
     3361 ggtgtccctg aggctggatt ttctgcgcat catctgcagc catgagcact atgttacctt
     3421 aaacttaccc tgtagcctgc taactccacc tgcgtcacca tcaccttctg tttcttctgc
     3481 aacatctcag agttctggat tttccaccac tgtgcaagac cagaagattg caaatatgtt
     3541 tgaattgtct gtgcctttcc gccagcaaca ttatttggca ggacttgtgt taacagagct
     3601 ggctgtcatt ttagatcctg atgctgaagg actgtttgga ttgcataaga aagtcatcaa
     3661 tatggtacac aatttactat ccagtcacga ctcagaccca cggtactctg acccccagat
     3721 aaaggctcgg gtggctatgt tgtatctgcc tctgattggc attatcatgg aaactgttcc
     3781 tcagctgtat gattttacag aaactcacaa tcaacgagga agaccaatct gtatagccac
     3841 cgatgattat gagagtgaga gcggaagcat gataagccag acagttgcca tggcaattgc
     3901 aggaacatca gttcctcagc taacaaggcc cggcagtttc ctcctcacat caacgagtgg
     3961 cagacaacac actacctttt cagcagaatc aagtcggagt cttttgatct gtctgctttg
     4021 ggttctcaag aatgcagatg agacagtttt acaaaagtgg tttacagatc tctcagtcct
     4081 gcagctaaac cggctattag atctgcttta tctttgtgta tcttgctttg aatacaaagg
     4141 aaagaaagtg tttgaaagaa tgaatagttt gacctttaag aaatcaaagg acatgagagc
     4201 aaagcttgag gaagctattc ttggaagcat aggtgctagg caagaaatgg tgcgccgaag
     4261 ccgaggacag cttggtatgt acacaatatc ttctccttct gagagaagcc catctggaag
     4321 tgcctttggg agtcaagaaa atctgaggtg gaggaaggat atgactcact ggcgtcaaaa
     4381 cactgagaag cttgacaagt caagagcaga gattgaacat gaagcactga ttgatggaaa
     4441 tctggctact gaagcaaatc taatcatttt ggatacatta gagattgttg tccagacagt
     4501 ttctgtaaca gaatccaaag agagcatcct tggtggggtg ctgaaagtgc tactacatag
     4561 catggcctgt aatcaaagtg cagtttatct acaacactgt tttgctaccc agagagccct
     4621 ggtttcaaag ttccctgaac tcttgtttga agaggagaca gagcagtgtg ctgatttatg
     4681 cctccggctt ctccggcact gtagcagtag catcggtaca atacggtcac atgctagtgc
     4741 ctccctttac ctacttatga gacagaactt tgagattggg aataactttg ccagggttaa
     4801 aatgcaggta accatgtcac tgtcttcctt ggtgggcaca tctcagaatt ttaatgaaga
     4861 attcttaaga cgttctctaa agactatact gacatatgct gaagaagact tggaattgag
     4921 ggagacaaca tttcctgatc aggtccaaga tttggttttc aacctccata tgatcctttc
     4981 tgatactgtt aaaatgaagg aacaccagga ggatcctgaa atgttgattg atctaatgta
     5041 cagaattgcc aaggggtacc agacctctcc agacctgcgg ctgacctggt tgcagaacat
     5101 ggctggcaaa cactcagaac gcagcaatca tgctgaagct gcccagtgcc tcgttcactc
     5161 agcagcactt gttgctgaat atctgagcat gctggaggac cggaaatatc ttcctgtggg
     5221 atgtgtaaca tttcagaata tttcatctaa tgttttagaa gaatctgcag tctcagatga
     5281 tgtggtatct ccagatgaag aaggtatctg ctctggaaag tactttactg agtcaggact
     5341 tgtgggatta ctggaacaag cagctgcttc tttctctatg gctggcatgt atgaagcagt
     5401 taacgaggtt tacaaagtac ttattcctat tcatgaagct aatcgggatg caaagaaact
     5461 atccacgatt catggtaaac ttcaagaagc attcagcaaa attgttcatc agagtactgg
     5521 ctgggagcgg atgtttggca cctattttcg tgttggtttt tatggaacca agttcgggga
     5581 tttggatgaa caggaatttg tttacaagga gcctgcgata accaaacttg cagagatatc
     5641 tcacagattg gagggatttt atggagaaag atttggagag gatgtggttg aagtaatcaa
     5701 ggattctaat cctgtagaca agtgtaaatt agatcctaac aaggcatata ttcagattac
     5761 ctacgtggag ccatactttg acacatatga gatgaaggac agaatcacat attttgacaa
     5821 aaattataat cttcgtcgtt tcatgtactg tacacccttc actttagatg gtcgtgccca
     5881 tggggaactt catgaacaat tcaaacggaa gaccattctg actacttctc atgcctttcc
     5941 ttacattaag acaagggtta atgtcactca caaagaggag atcatcttaa caccaattga
     6001 agttgctatt gaagacatgc agaaaaaaac gcaggagttg gcatttgcca cacatcagga
     6061 tccagcagac cccaaaatgc ttcagatggt actccaggga tctgtaggca caacagtgaa
     6121 tcaggggcct ttggaagttg cccaggtttt cctgtctgaa atacccagtg acccaaagct
     6181 cttcagacat cataataaac tgcgactctg cttcaaagat tttactaaaa ggtgtgagga
     6241 tgccttaaga aaaaataaga gcttaattgg gccagatcaa aaggagtatc aaagggaact
     6301 ggagagaaac tatcatcgcc ttaaagaggc cctacagcct ctgataaaca gaaagatccc
     6361 tcagttatac aaggcagtat tacctgttac ctgccacagg gattccttca gtcgaatgag
     6421 cctgcgcaaa atggatctct aatataaatg cacttgtttt attcatttga aaaaagccat
     6481 gtattcaaca ttgagtgtga aaagaattta agaacttttg aaaaagactt gggacttaat
     6541 cctggaaatt gtagtattaa tttactcatg gaagaatgca gtggccaaac aatatcaaat
     6601 ggcgatcgct gaagtttgag aatcatggct gtggtttcta atgttctggt aatatgctgt
     6661 tatctttttt aagacatttt aatgactcac aggtacactt acatttacca ttatttatac
     6721 catagctaat gttaaattta tttactttaa gtttgtattt tttaatttat attaccattt
     6781 atagattcgt tttggaacca ttttaaatgt agtaattctt attttaaagg tactattaaa
     6841 tatgtgaatg tttacactaa ttttactgag actaaaaaaa atttttttac tgacaaaagc
     6901 agagaataag ttgattcaag aaacagttcc aaaaatagca aaatgaaaat cataattgac
     6961 actttatgga cccagataat agccccaaaa ttaaataaat gaataaatta atgggtggaa
     7021 ataaattatt gataactggt ttgtaaagtc ttaaaactgg tttctaaggt attttccatt
     7081 taggcacaca aaaaagggat ttagaattgc agaagaaact ttacgtgata acttctgtct
     7141 ataaataacg attacatact gggatagcta ataccagtga ca
//
LOCUS       XM_032648507            6856 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X5, mRNA.
ACCESSION   XM_032648507
VERSION     XM_032648507.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6856
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6856
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116761951"
     CDS             113..6436
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X5"
                     /protein_id="XP_032504398.1"
                     /db_xref="GeneID:116761951"
                     /translation="MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGSIS
                     HHTTVPLTEAVDPVDLEDYLITHPLAVDSGLLRDLIEFPPDDIEVVYSPRDCRTLVSA
                     VPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFES
                     DEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNLLDRTPNEE
                     IDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVKCLSLKFEI
                     EIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSIT
                     YPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLG
                     KYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERT
                     TSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQ
                     LKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYI
                     YPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNR
                     SPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKT
                     GQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKF
                     FALVNALDEHMFPVRIGDMRIMENNLENELKSSIAALNSSQLEPVVRFLYLLLDKLIL
                     LVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASYIFYVFRLP
                     NTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDE
                     VRSIIGSKAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRES
                     ALQQAWFFFELMVKSMVHHLYFNDKLDAPRKSRFPERFMDDIAALVSTIASDIVSRFQ
                     KDTEMVERLNTSLAFFLNDLLSVMDRGFVFSLIKTCYKQVSSKLYSLPTPSVLVSLRL
                     DFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTTVQDQKIANMFELS
                     VPFRQQHYLAGLVLTELAVILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIK
                     ARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIATDDYESESGSMISQTVAMAI
                     AGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDL
                     SVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQE
                     MVRRSRGQLGMYTISSPSERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEH
                     EALIDGNLATEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLHSMACNQSAVYLQ
                     HCFATQRALVSKFPELLFEEETEQCADLCLRLLRHCSSSIGTIRSHASASLYLLMRQN
                     FEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQ
                     VQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHS
                     ERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVS
                     PDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLS
                     TIHGKLQEAFSKIVHQDGKRMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEISH
                     RLEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPYFDTYEMKDRITYFD
                     KNYNLRRFMYCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEIILT
                     PIEVAIEDMQKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIP
                     SDPKLFRHHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQP
                     LINRKIPQLYKAVLPVTCHRDSFSRMSLRKMDL"
     misc_feature    266..595
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    1790..2323
                     /gene="DOCK7"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; Region: C2_Dock-C; cd08696"
                     /db_xref="CDD:176078"
     misc_feature    4949..6367
                     /gene="DOCK7"
                     /note="Dock Homology Region 2, a GEF domain, of Class C
                     Dedicator of Cytokinesis 7; Region: DHR2_DOCK7; cd11703"
                     /db_xref="CDD:212576"
     misc_feature    order(5414..5416,5444..5446,5450..5455,5459..5464,
                     5471..5476,5480..5485,5492..5497)
                     /gene="DOCK7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212576"
     misc_feature    order(5534..5536,5540..5542,5609..5611,5618..5629,
                     5633..5638,5693..5701,5750..5758,5840..5851,5879..5884,
                     5891..5893,5897..5899,6008..6013,6020..6022,6068..6073,
                     6077..6082,6089..6097,6104..6112,6119..6124,6131..6133,
                     6215..6217,6281..6283,6290..6292)
                     /gene="DOCK7"
                     /note="Rac/Cdc42 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212576"
     misc_feature    6104..6121
                     /gene="DOCK7"
                     /note="nucleotide sensor; other site"
                     /db_xref="CDD:212576"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggc
     2881 tatggatcga agttgtaatc gtatgtcttc gcacacagag acgtcaagtt tcttacaaac
     2941 attaacggga cgcttaccaa ctaaaaagct atttcatgag gagctggctt tgcagtgggt
     3001 tgtttgcagt ggcagcgttc gggaatcagc tttgcaacaa gcctggttct tttttgagtt
     3061 aatggtaaag agcatggtgc accatttata ctttaatgat aaacttgatg caccaaggaa
     3121 aagtcgtttt ccagaacgtt tcatggatga cattgctgct cttgtcagca caattgctag
     3181 tgatatagtt tcacgatttc agaaggacac agaaatggtt gagagactca acacaagcct
     3241 tgcattcttt ctcaatgatc tgttgtctgt tatggacaga ggatttgtgt ttagccttat
     3301 aaagacctgc tataaacagg tatcttcaaa gctttattca ttaccaactc caagtgtctt
     3361 ggtgtccctg aggctggatt ttctgcgcat catctgcagc catgagcact atgttacctt
     3421 aaacttaccc tgtagcctgc taactccacc tgcgtcacca tcaccttctg tttcttctgc
     3481 aacatctcag agttctggat tttccaccac tgtgcaagac cagaagattg caaatatgtt
     3541 tgaattgtct gtgcctttcc gccagcaaca ttatttggca ggacttgtgt taacagagct
     3601 ggctgtcatt ttagatcctg atgctgaagg actgtttgga ttgcataaga aagtcatcaa
     3661 tatggtacac aatttactat ccagtcacga ctcagaccca cggtactctg acccccagat
     3721 aaaggctcgg gtggctatgt tgtatctgcc tctgattggc attatcatgg aaactgttcc
     3781 tcagctgtat gattttacag aaactcacaa tcaacgagga agaccaatct gtatagccac
     3841 cgatgattat gagagtgaga gcggaagcat gataagccag acagttgcca tggcaattgc
     3901 aggaacatca gttcctcagc taacaaggcc cggcagtttc ctcctcacat caacgagtgg
     3961 cagacaacac actacctttt cagcagaatc aagtcggagt cttttgatct gtctgctttg
     4021 ggttctcaag aatgcagatg agacagtttt acaaaagtgg tttacagatc tctcagtcct
     4081 gcagctaaac cggctattag atctgcttta tctttgtgta tcttgctttg aatacaaagg
     4141 aaagaaagtg tttgaaagaa tgaatagttt gacctttaag aaatcaaagg acatgagagc
     4201 aaagcttgag gaagctattc ttggaagcat aggtgctagg caagaaatgg tgcgccgaag
     4261 ccgaggacag cttggtatgt acacaatatc ttctccttct gagagaagcc catctggaag
     4321 tgcctttggg agtcaagaaa atctgaggtg gaggaaggat atgactcact ggcgtcaaaa
     4381 cactgagaag cttgacaagt caagagcaga gattgaacat gaagcactga ttgatggaaa
     4441 tctggctact gaagcaaatc taatcatttt ggatacatta gagattgttg tccagacagt
     4501 ttctgtaaca gaatccaaag agagcatcct tggtggggtg ctgaaagtgc tactacatag
     4561 catggcctgt aatcaaagtg cagtttatct acaacactgt tttgctaccc agagagccct
     4621 ggtttcaaag ttccctgaac tcttgtttga agaggagaca gagcagtgtg ctgatttatg
     4681 cctccggctt ctccggcact gtagcagtag catcggtaca atacggtcac atgctagtgc
     4741 ctccctttac ctacttatga gacagaactt tgagattggg aataactttg ccagggttaa
     4801 aatgcaggta accatgtcac tgtcttcctt ggtgggcaca tctcagaatt ttaatgaaga
     4861 attcttaaga cgttctctaa agactatact gacatatgct gaagaagact tggaattgag
     4921 ggagacaaca tttcctgatc aggtccaaga tttggttttc aacctccata tgatcctttc
     4981 tgatactgtt aaaatgaagg aacaccagga ggatcctgaa atgttgattg atctaatgta
     5041 cagaattgcc aaggggtacc agacctctcc agacctgcgg ctgacctggt tgcagaacat
     5101 ggctggcaaa cactcagaac gcagcaatca tgctgaagct gcccagtgcc tcgttcactc
     5161 agcagcactt gttgctgaat atctgagcat gctggaggac cggaaatatc ttcctgtggg
     5221 atgtgtaaca tttcagaata tttcatctaa tgttttagaa gaatctgcag tctcagatga
     5281 tgtggtatct ccagatgaag aaggtatctg ctctggaaag tactttactg agtcaggact
     5341 tgtgggatta ctggaacaag cagctgcttc tttctctatg gctggcatgt atgaagcagt
     5401 taacgaggtt tacaaagtac ttattcctat tcatgaagct aatcgggatg caaagaaact
     5461 atccacgatt catggtaaac ttcaagaagc attcagcaaa attgttcatc aggatggtaa
     5521 gcggatgttt ggcacctatt ttcgtgttgg tttttatgga accaagttcg gggatttgga
     5581 tgaacaggaa tttgtttaca aggagcctgc gataaccaaa cttgcagaga tatctcacag
     5641 attggaggga ttttatggag aaagatttgg agaggatgtg gttgaagtaa tcaaggattc
     5701 taatcctgta gacaagtgta aattagatcc taacaaggca tatattcaga ttacctacgt
     5761 ggagccatac tttgacacat atgagatgaa ggacagaatc acatattttg acaaaaatta
     5821 taatcttcgt cgtttcatgt actgtacacc cttcacttta gatggtcgtg cccatgggga
     5881 acttcatgaa caattcaaac ggaagaccat tctgactact tctcatgcct ttccttacat
     5941 taagacaagg gttaatgtca ctcacaaaga ggagatcatc ttaacaccaa ttgaagttgc
     6001 tattgaagac atgcagaaaa aaacgcagga gttggcattt gccacacatc aggatccagc
     6061 agaccccaaa atgcttcaga tggtactcca gggatctgta ggcacaacag tgaatcaggg
     6121 gcctttggaa gttgcccagg ttttcctgtc tgaaataccc agtgacccaa agctcttcag
     6181 acatcataat aaactgcgac tctgcttcaa agattttact aaaaggtgtg aggatgcctt
     6241 aagaaaaaat aagagcttaa ttgggccaga tcaaaaggag tatcaaaggg aactggagag
     6301 aaactatcat cgccttaaag aggccctaca gcctctgata aacagaaaga tccctcagtt
     6361 atacaaggca gtattacctg ttacctgcca cagggattcc ttcagtcgaa tgagcctgcg
     6421 caaaatggat ctctaatata aatgcacttg ttttattcat ttgaaaaaag ccatgtattc
     6481 aacattgagt gtgaaaagaa tttaagaact tttgaaaaag acttgggact taatcctgga
     6541 aattgtagta ttaatttact catggaagaa tgcagtggcc aaacaatatc aaatggcgat
     6601 cgctgaagtt tgagaatcat ggctgtggtt tctaatgttc tggtaatatg ctgttatctt
     6661 ttttaagaca ttttaatgac tcacaggtac acttacattt accattattt ataccatagc
     6721 taatgttaaa tttatttact ttaagtttgt attttttaat ttatattacc atttatagat
     6781 tcgttttgga accattttaa atgtagtaat tcttatttta aaggtactat taaatatgtg
     6841 aatgtttaca ctaatt
//
LOCUS       XM_032648516            7155 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X6, mRNA.
ACCESSION   XM_032648516
VERSION     XM_032648516.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7155
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7155
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761951"
     CDS             113..6415
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X6"
                     /protein_id="XP_032504407.1"
                     /db_xref="GeneID:116761951"
                     /translation="MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGSIS
                     HHTTVPLTEAVDPVDLEDYLITHPLAVDSGLLRDLIEFPPDDIEVVYSPRDCRTLVSA
                     VPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFES
                     DEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNLLDRTPNEE
                     IDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVKCLSLKFEI
                     EIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSIT
                     YPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLG
                     KYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERT
                     TSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQ
                     LKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYI
                     YPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNR
                     SPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKT
                     GQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKF
                     FALVNALDEHMFPVRIGDMRIMENNLENELKSSIAALNSSQLEPVVRFLYLLLDKLIL
                     LVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASYIFYVFRLP
                     NTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDE
                     VRSIIGSKAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRES
                     ALQQAWFFFELMVKSMVHHLYFNDKLDAPRKSRFPERFMDDIAALVSTIASDIVSRFQ
                     KDTEMVERLNTSLAFFLNDLLSVMDRGFVFSLIKTCYKQVSSKLYSLPTPSVLVSLRL
                     DFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTTVQDQKIANMFELS
                     VPFRQQHYLAGLVLTELAVILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIK
                     ARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIATDDYESESGSMISQTVAMAI
                     AGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDL
                     SVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQE
                     MVRRSRGQLERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEHEALIDGNLA
                     TEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLHSMACNQSAVYLQHCFATQRAL
                     VSKFPELLFEEETEQCADLCLRLLRHCSSSIGTIRSHASASLYLLMRQNFEIGNNFAR
                     VKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQVQDLVFNLH
                     MILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHSERSNHAEAA
                     QCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVSPDEEGICSG
                     KYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLSTIHGKLQEA
                     FSKIVHQSTGWERMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEISHRLEGFYG
                     ERFGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPYFDTYEMKDRITYFDKNYNLRR
                     FMYCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEIILTPIEVAIE
                     DMQKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPSDPKLFR
                     HHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQPLINRKIP
                     QLYKAVLPVTCHRDSFSRMSLRKMDL"
     misc_feature    266..595
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    1790..2323
                     /gene="DOCK7"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; Region: C2_Dock-C; cd08696"
                     /db_xref="CDD:176078"
     misc_feature    4922..6346
                     /gene="DOCK7"
                     /note="Dock Homology Region 2, a GEF domain, of Class C
                     Dedicator of Cytokinesis 7; Region: DHR2_DOCK7; cd11703"
                     /db_xref="CDD:212576"
     misc_feature    order(5387..5389,5417..5419,5423..5428,5432..5437,
                     5444..5449,5453..5458,5465..5470)
                     /gene="DOCK7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212576"
     misc_feature    order(5513..5515,5519..5521,5588..5590,5597..5608,
                     5612..5617,5672..5680,5729..5737,5819..5830,5858..5863,
                     5870..5872,5876..5878,5987..5992,5999..6001,6047..6052,
                     6056..6061,6068..6076,6083..6091,6098..6103,6110..6112,
                     6194..6196,6260..6262,6269..6271)
                     /gene="DOCK7"
                     /note="Rac/Cdc42 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212576"
     misc_feature    6083..6100
                     /gene="DOCK7"
                     /note="nucleotide sensor; other site"
                     /db_xref="CDD:212576"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggc
     2881 tatggatcga agttgtaatc gtatgtcttc gcacacagag acgtcaagtt tcttacaaac
     2941 attaacggga cgcttaccaa ctaaaaagct atttcatgag gagctggctt tgcagtgggt
     3001 tgtttgcagt ggcagcgttc gggaatcagc tttgcaacaa gcctggttct tttttgagtt
     3061 aatggtaaag agcatggtgc accatttata ctttaatgat aaacttgatg caccaaggaa
     3121 aagtcgtttt ccagaacgtt tcatggatga cattgctgct cttgtcagca caattgctag
     3181 tgatatagtt tcacgatttc agaaggacac agaaatggtt gagagactca acacaagcct
     3241 tgcattcttt ctcaatgatc tgttgtctgt tatggacaga ggatttgtgt ttagccttat
     3301 aaagacctgc tataaacagg tatcttcaaa gctttattca ttaccaactc caagtgtctt
     3361 ggtgtccctg aggctggatt ttctgcgcat catctgcagc catgagcact atgttacctt
     3421 aaacttaccc tgtagcctgc taactccacc tgcgtcacca tcaccttctg tttcttctgc
     3481 aacatctcag agttctggat tttccaccac tgtgcaagac cagaagattg caaatatgtt
     3541 tgaattgtct gtgcctttcc gccagcaaca ttatttggca ggacttgtgt taacagagct
     3601 ggctgtcatt ttagatcctg atgctgaagg actgtttgga ttgcataaga aagtcatcaa
     3661 tatggtacac aatttactat ccagtcacga ctcagaccca cggtactctg acccccagat
     3721 aaaggctcgg gtggctatgt tgtatctgcc tctgattggc attatcatgg aaactgttcc
     3781 tcagctgtat gattttacag aaactcacaa tcaacgagga agaccaatct gtatagccac
     3841 cgatgattat gagagtgaga gcggaagcat gataagccag acagttgcca tggcaattgc
     3901 aggaacatca gttcctcagc taacaaggcc cggcagtttc ctcctcacat caacgagtgg
     3961 cagacaacac actacctttt cagcagaatc aagtcggagt cttttgatct gtctgctttg
     4021 ggttctcaag aatgcagatg agacagtttt acaaaagtgg tttacagatc tctcagtcct
     4081 gcagctaaac cggctattag atctgcttta tctttgtgta tcttgctttg aatacaaagg
     4141 aaagaaagtg tttgaaagaa tgaatagttt gacctttaag aaatcaaagg acatgagagc
     4201 aaagcttgag gaagctattc ttggaagcat aggtgctagg caagaaatgg tgcgccgaag
     4261 ccgaggacag cttgagagaa gcccatctgg aagtgccttt gggagtcaag aaaatctgag
     4321 gtggaggaag gatatgactc actggcgtca aaacactgag aagcttgaca agtcaagagc
     4381 agagattgaa catgaagcac tgattgatgg aaatctggct actgaagcaa atctaatcat
     4441 tttggataca ttagagattg ttgtccagac agtttctgta acagaatcca aagagagcat
     4501 ccttggtggg gtgctgaaag tgctactaca tagcatggcc tgtaatcaaa gtgcagttta
     4561 tctacaacac tgttttgcta cccagagagc cctggtttca aagttccctg aactcttgtt
     4621 tgaagaggag acagagcagt gtgctgattt atgcctccgg cttctccggc actgtagcag
     4681 tagcatcggt acaatacggt cacatgctag tgcctccctt tacctactta tgagacagaa
     4741 ctttgagatt gggaataact ttgccagggt taaaatgcag gtaaccatgt cactgtcttc
     4801 cttggtgggc acatctcaga attttaatga agaattctta agacgttctc taaagactat
     4861 actgacatat gctgaagaag acttggaatt gagggagaca acatttcctg atcaggtcca
     4921 agatttggtt ttcaacctcc atatgatcct ttctgatact gttaaaatga aggaacacca
     4981 ggaggatcct gaaatgttga ttgatctaat gtacagaatt gccaaggggt accagacctc
     5041 tccagacctg cggctgacct ggttgcagaa catggctggc aaacactcag aacgcagcaa
     5101 tcatgctgaa gctgcccagt gcctcgttca ctcagcagca cttgttgctg aatatctgag
     5161 catgctggag gaccggaaat atcttcctgt gggatgtgta acatttcaga atatttcatc
     5221 taatgtttta gaagaatctg cagtctcaga tgatgtggta tctccagatg aagaaggtat
     5281 ctgctctgga aagtacttta ctgagtcagg acttgtggga ttactggaac aagcagctgc
     5341 ttctttctct atggctggca tgtatgaagc agttaacgag gtttacaaag tacttattcc
     5401 tattcatgaa gctaatcggg atgcaaagaa actatccacg attcatggta aacttcaaga
     5461 agcattcagc aaaattgttc atcagagtac tggctgggag cggatgtttg gcacctattt
     5521 tcgtgttggt ttttatggaa ccaagttcgg ggatttggat gaacaggaat ttgtttacaa
     5581 ggagcctgcg ataaccaaac ttgcagagat atctcacaga ttggagggat tttatggaga
     5641 aagatttgga gaggatgtgg ttgaagtaat caaggattct aatcctgtag acaagtgtaa
     5701 attagatcct aacaaggcat atattcagat tacctacgtg gagccatact ttgacacata
     5761 tgagatgaag gacagaatca catattttga caaaaattat aatcttcgtc gtttcatgta
     5821 ctgtacaccc ttcactttag atggtcgtgc ccatggggaa cttcatgaac aattcaaacg
     5881 gaagaccatt ctgactactt ctcatgcctt tccttacatt aagacaaggg ttaatgtcac
     5941 tcacaaagag gagatcatct taacaccaat tgaagttgct attgaagaca tgcagaaaaa
     6001 aacgcaggag ttggcatttg ccacacatca ggatccagca gaccccaaaa tgcttcagat
     6061 ggtactccag ggatctgtag gcacaacagt gaatcagggg cctttggaag ttgcccaggt
     6121 tttcctgtct gaaataccca gtgacccaaa gctcttcaga catcataata aactgcgact
     6181 ctgcttcaaa gattttacta aaaggtgtga ggatgcctta agaaaaaata agagcttaat
     6241 tgggccagat caaaaggagt atcaaaggga actggagaga aactatcatc gccttaaaga
     6301 ggccctacag cctctgataa acagaaagat ccctcagtta tacaaggcag tattacctgt
     6361 tacctgccac agggattcct tcagtcgaat gagcctgcgc aaaatggatc tctaatataa
     6421 atgcacttgt tttattcatt tgaaaaaagc catgtattca acattgagtg tgaaaagaat
     6481 ttaagaactt ttgaaaaaga cttgggactt aatcctggaa attgtagtat taatttactc
     6541 atggaagaat gcagtggcca aacaatatca aatggcgatc gctgaagttt gagaatcatg
     6601 gctgtggttt ctaatgttct ggtaatatgc tgttatcttt tttaagacat tttaatgact
     6661 cacaggtaca cttacattta ccattattta taccatagct aatgttaaat ttatttactt
     6721 taagtttgta ttttttaatt tatattacca tttatagatt cgttttggaa ccattttaaa
     6781 tgtagtaatt cttattttaa aggtactatt aaatatgtga atgtttacac taattttact
     6841 gagactaaaa aaaatttttt tactgacaaa agcagagaat aagttgattc aagaaacagt
     6901 tccaaaaata gcaaaatgaa aatcataatt gacactttat ggacccagat aatagcccca
     6961 aaattaaata aatgaataaa ttaatgggtg gaaataaatt attgataact ggtttgtaaa
     7021 gtcttaaaac tggtttctaa ggtattttcc atttaggcac acaaaaaagg gatttagaat
     7081 tgcagaagaa actttacgtg ataacttctg tctataaata acgattacat actgggatag
     7141 ctaataccag tgaca
//
LOCUS       XM_032648527            7149 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X7, mRNA.
ACCESSION   XM_032648527
VERSION     XM_032648527.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7149
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7149
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 57 long SRA reads, 12
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761951"
     CDS             113..6409
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X7"
                     /protein_id="XP_032504418.1"
                     /db_xref="GeneID:116761951"
                     /translation="MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGSIS
                     HHTTVPLTEAVDPVDLEDYLITHPLAVDSGLLRDLIEFPPDDIEVVYSPRDCRTLVSA
                     VPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFES
                     DEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNLLDRTPNEE
                     IDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVKCLSLKFEI
                     EIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSIT
                     YPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLG
                     KYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERT
                     TSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQ
                     LKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYI
                     YPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNR
                     SPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKT
                     GQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKF
                     FALVNALDEHMFPVRIGDMRIMENNLENELKSSIAALNSSQLEPVVRFLYLLLDKLIL
                     LVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASYIFYVFRLP
                     NTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDE
                     VRSIIGSKAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRES
                     ALQQAWFFFELMVKSMVHHLYFNDKLDAPRKSRFPERFMDDIAALVSTIASDIVSRFQ
                     KDTEMVERLNTSLAFFLNDLLSVMDRGFVFSLIKTCYKQVSSKLYSLPTPSVLVSLRL
                     DFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTTVQDQKIANMFELS
                     VPFRQQHYLAGLVLTELAVILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIK
                     ARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIATDDYESESGSMISQTVAMAI
                     AGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDL
                     SVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQE
                     MVRRSRGQLERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEHEALIDGNLA
                     TEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLHSMACNQSAVYLQHCFATQRAL
                     VSKFPELLFEEETEQCADLCLRLLRHCSSSIGTIRSHASASLYLLMRQNFEIGNNFAR
                     VKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQVQDLVFNLH
                     MILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHSERSNHAEAA
                     QCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVSPDEEGICSG
                     KYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLSTIHGKLQEA
                     FSKIVHQDGKRMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEISHRLEGFYGER
                     FGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPYFDTYEMKDRITYFDKNYNLRRFM
                     YCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEIILTPIEVAIEDM
                     QKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPSDPKLFRHH
                     NKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQL
                     YKAVLPVTCHRDSFSRMSLRKMDL"
     misc_feature    266..595
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    1790..2323
                     /gene="DOCK7"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; Region: C2_Dock-C; cd08696"
                     /db_xref="CDD:176078"
     misc_feature    4922..6340
                     /gene="DOCK7"
                     /note="Dock Homology Region 2, a GEF domain, of Class C
                     Dedicator of Cytokinesis 7; Region: DHR2_DOCK7; cd11703"
                     /db_xref="CDD:212576"
     misc_feature    order(5387..5389,5417..5419,5423..5428,5432..5437,
                     5444..5449,5453..5458,5465..5470)
                     /gene="DOCK7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212576"
     misc_feature    order(5507..5509,5513..5515,5582..5584,5591..5602,
                     5606..5611,5666..5674,5723..5731,5813..5824,5852..5857,
                     5864..5866,5870..5872,5981..5986,5993..5995,6041..6046,
                     6050..6055,6062..6070,6077..6085,6092..6097,6104..6106,
                     6188..6190,6254..6256,6263..6265)
                     /gene="DOCK7"
                     /note="Rac/Cdc42 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212576"
     misc_feature    6077..6094
                     /gene="DOCK7"
                     /note="nucleotide sensor; other site"
                     /db_xref="CDD:212576"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggc
     2881 tatggatcga agttgtaatc gtatgtcttc gcacacagag acgtcaagtt tcttacaaac
     2941 attaacggga cgcttaccaa ctaaaaagct atttcatgag gagctggctt tgcagtgggt
     3001 tgtttgcagt ggcagcgttc gggaatcagc tttgcaacaa gcctggttct tttttgagtt
     3061 aatggtaaag agcatggtgc accatttata ctttaatgat aaacttgatg caccaaggaa
     3121 aagtcgtttt ccagaacgtt tcatggatga cattgctgct cttgtcagca caattgctag
     3181 tgatatagtt tcacgatttc agaaggacac agaaatggtt gagagactca acacaagcct
     3241 tgcattcttt ctcaatgatc tgttgtctgt tatggacaga ggatttgtgt ttagccttat
     3301 aaagacctgc tataaacagg tatcttcaaa gctttattca ttaccaactc caagtgtctt
     3361 ggtgtccctg aggctggatt ttctgcgcat catctgcagc catgagcact atgttacctt
     3421 aaacttaccc tgtagcctgc taactccacc tgcgtcacca tcaccttctg tttcttctgc
     3481 aacatctcag agttctggat tttccaccac tgtgcaagac cagaagattg caaatatgtt
     3541 tgaattgtct gtgcctttcc gccagcaaca ttatttggca ggacttgtgt taacagagct
     3601 ggctgtcatt ttagatcctg atgctgaagg actgtttgga ttgcataaga aagtcatcaa
     3661 tatggtacac aatttactat ccagtcacga ctcagaccca cggtactctg acccccagat
     3721 aaaggctcgg gtggctatgt tgtatctgcc tctgattggc attatcatgg aaactgttcc
     3781 tcagctgtat gattttacag aaactcacaa tcaacgagga agaccaatct gtatagccac
     3841 cgatgattat gagagtgaga gcggaagcat gataagccag acagttgcca tggcaattgc
     3901 aggaacatca gttcctcagc taacaaggcc cggcagtttc ctcctcacat caacgagtgg
     3961 cagacaacac actacctttt cagcagaatc aagtcggagt cttttgatct gtctgctttg
     4021 ggttctcaag aatgcagatg agacagtttt acaaaagtgg tttacagatc tctcagtcct
     4081 gcagctaaac cggctattag atctgcttta tctttgtgta tcttgctttg aatacaaagg
     4141 aaagaaagtg tttgaaagaa tgaatagttt gacctttaag aaatcaaagg acatgagagc
     4201 aaagcttgag gaagctattc ttggaagcat aggtgctagg caagaaatgg tgcgccgaag
     4261 ccgaggacag cttgagagaa gcccatctgg aagtgccttt gggagtcaag aaaatctgag
     4321 gtggaggaag gatatgactc actggcgtca aaacactgag aagcttgaca agtcaagagc
     4381 agagattgaa catgaagcac tgattgatgg aaatctggct actgaagcaa atctaatcat
     4441 tttggataca ttagagattg ttgtccagac agtttctgta acagaatcca aagagagcat
     4501 ccttggtggg gtgctgaaag tgctactaca tagcatggcc tgtaatcaaa gtgcagttta
     4561 tctacaacac tgttttgcta cccagagagc cctggtttca aagttccctg aactcttgtt
     4621 tgaagaggag acagagcagt gtgctgattt atgcctccgg cttctccggc actgtagcag
     4681 tagcatcggt acaatacggt cacatgctag tgcctccctt tacctactta tgagacagaa
     4741 ctttgagatt gggaataact ttgccagggt taaaatgcag gtaaccatgt cactgtcttc
     4801 cttggtgggc acatctcaga attttaatga agaattctta agacgttctc taaagactat
     4861 actgacatat gctgaagaag acttggaatt gagggagaca acatttcctg atcaggtcca
     4921 agatttggtt ttcaacctcc atatgatcct ttctgatact gttaaaatga aggaacacca
     4981 ggaggatcct gaaatgttga ttgatctaat gtacagaatt gccaaggggt accagacctc
     5041 tccagacctg cggctgacct ggttgcagaa catggctggc aaacactcag aacgcagcaa
     5101 tcatgctgaa gctgcccagt gcctcgttca ctcagcagca cttgttgctg aatatctgag
     5161 catgctggag gaccggaaat atcttcctgt gggatgtgta acatttcaga atatttcatc
     5221 taatgtttta gaagaatctg cagtctcaga tgatgtggta tctccagatg aagaaggtat
     5281 ctgctctgga aagtacttta ctgagtcagg acttgtggga ttactggaac aagcagctgc
     5341 ttctttctct atggctggca tgtatgaagc agttaacgag gtttacaaag tacttattcc
     5401 tattcatgaa gctaatcggg atgcaaagaa actatccacg attcatggta aacttcaaga
     5461 agcattcagc aaaattgttc atcaggatgg taagcggatg tttggcacct attttcgtgt
     5521 tggtttttat ggaaccaagt tcggggattt ggatgaacag gaatttgttt acaaggagcc
     5581 tgcgataacc aaacttgcag agatatctca cagattggag ggattttatg gagaaagatt
     5641 tggagaggat gtggttgaag taatcaagga ttctaatcct gtagacaagt gtaaattaga
     5701 tcctaacaag gcatatattc agattaccta cgtggagcca tactttgaca catatgagat
     5761 gaaggacaga atcacatatt ttgacaaaaa ttataatctt cgtcgtttca tgtactgtac
     5821 acccttcact ttagatggtc gtgcccatgg ggaacttcat gaacaattca aacggaagac
     5881 cattctgact acttctcatg cctttcctta cattaagaca agggttaatg tcactcacaa
     5941 agaggagatc atcttaacac caattgaagt tgctattgaa gacatgcaga aaaaaacgca
     6001 ggagttggca tttgccacac atcaggatcc agcagacccc aaaatgcttc agatggtact
     6061 ccagggatct gtaggcacaa cagtgaatca ggggcctttg gaagttgccc aggttttcct
     6121 gtctgaaata cccagtgacc caaagctctt cagacatcat aataaactgc gactctgctt
     6181 caaagatttt actaaaaggt gtgaggatgc cttaagaaaa aataagagct taattgggcc
     6241 agatcaaaag gagtatcaaa gggaactgga gagaaactat catcgcctta aagaggccct
     6301 acagcctctg ataaacagaa agatccctca gttatacaag gcagtattac ctgttacctg
     6361 ccacagggat tccttcagtc gaatgagcct gcgcaaaatg gatctctaat ataaatgcac
     6421 ttgttttatt catttgaaaa aagccatgta ttcaacattg agtgtgaaaa gaatttaaga
     6481 acttttgaaa aagacttggg acttaatcct ggaaattgta gtattaattt actcatggaa
     6541 gaatgcagtg gccaaacaat atcaaatggc gatcgctgaa gtttgagaat catggctgtg
     6601 gtttctaatg ttctggtaat atgctgttat cttttttaag acattttaat gactcacagg
     6661 tacacttaca tttaccatta tttataccat agctaatgtt aaatttattt actttaagtt
     6721 tgtatttttt aatttatatt accatttata gattcgtttt ggaaccattt taaatgtagt
     6781 aattcttatt ttaaaggtac tattaaatat gtgaatgttt acactaattt tactgagact
     6841 aaaaaaaatt tttttactga caaaagcaga gaataagttg attcaagaaa cagttccaaa
     6901 aatagcaaaa tgaaaatcat aattgacact ttatggaccc agataatagc cccaaaatta
     6961 aataaatgaa taaattaatg ggtggaaata aattattgat aactggtttg taaagtctta
     7021 aaactggttt ctaaggtatt ttccatttag gcacacaaaa aagggattta gaattgcaga
     7081 agaaacttta cgtgataact tctgtctata aataacgatt acatactggg atagctaata
     7141 ccagtgaca
//
LOCUS       XM_032648534            7232 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X8, mRNA.
ACCESSION   XM_032648534
VERSION     XM_032648534.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7232
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7232
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 51 long SRA reads, 9 Proteins, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761951"
     CDS             663..6635
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X8"
                     /protein_id="XP_032504425.1"
                     /db_xref="GeneID:116761951"
                     /translation="MDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKG
                     LPKQVFESDEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNL
                     LDRTPNEEIDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVK
                     CLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLA
                     RSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQA
                     DQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLV
                     GRRSLERTTSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLR
                     RLRPITAQLKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNT
                     TYRNLLYIYPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAY
                     TAVVYHNRSPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPM
                     LQNGRLKTGQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHT
                     QDPYLDKFFALVNALDEHMFPVRIGDMRIMENNLENELKSSIAALNSSQLEPVVRFLY
                     LLLDKLILLVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASY
                     IFYVFRLPNTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISG
                     TPTSPDDEVRSIIGSKAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVV
                     CSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLDAPRKSRFPERFMDDIAALVSTIA
                     SDIVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRGFVFSLIKTCYKQVSSKLYSLPTP
                     SVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTTVQDQK
                     IANMFELSVPFRQQHYLAGLVLTELAVILDPDAEGLFGLHKKVINMVHNLLSSHDSDP
                     RYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIATDDYESESGSMI
                     SQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETV
                     LQKWFTDLSVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAIL
                     GSIGARQEMVRRSRGQLERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEHE
                     ALIDGNLATEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLHSMACNQSAVYLQH
                     CFATQRALVSKFPELLFEEETEQCADLCLRLLRHCSSSIGTIRSHASASLYLLMRQNF
                     EIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQV
                     QDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHSE
                     RSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVSP
                     DEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLST
                     IHGKLQEAFSKIVHQDGKRMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEISHR
                     LEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPYFDTYEMKDRITYFDK
                     NYNLRRFMYCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEIILTP
                     IEVAIEDMQKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPS
                     DPKLFRHHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQPL
                     INRKIPQLYKAVLPVTCHRDSFSRMSLRKMDL"
     misc_feature    <663..821
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    2016..2549
                     /gene="DOCK7"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; Region: C2_Dock-C; cd08696"
                     /db_xref="CDD:176078"
     misc_feature    5148..6566
                     /gene="DOCK7"
                     /note="Dock Homology Region 2, a GEF domain, of Class C
                     Dedicator of Cytokinesis 7; Region: DHR2_DOCK7; cd11703"
                     /db_xref="CDD:212576"
     misc_feature    order(5613..5615,5643..5645,5649..5654,5658..5663,
                     5670..5675,5679..5684,5691..5696)
                     /gene="DOCK7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212576"
     misc_feature    order(5733..5735,5739..5741,5808..5810,5817..5828,
                     5832..5837,5892..5900,5949..5957,6039..6050,6078..6083,
                     6090..6092,6096..6098,6207..6212,6219..6221,6267..6272,
                     6276..6281,6288..6296,6303..6311,6318..6323,6330..6332,
                     6414..6416,6480..6482,6489..6491)
                     /gene="DOCK7"
                     /note="Rac/Cdc42 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212576"
     misc_feature    6303..6320
                     /gene="DOCK7"
                     /note="nucleotide sensor; other site"
                     /db_xref="CDD:212576"
ORIGIN      
        1 agaattggaa ttagacttgg caaagattac taaatgccac cagtgttaga caattgaagt
       61 tttctgtagc aagaacagaa ttcaagaaaa agaaaaccaa agtgttggaa agcacctaca
      121 gtgagagtca cgaaggatta aaaaaatcta agaaaatctt cctggcattt gtgctgccca
      181 agctggagtt gataaaattg tttctattct ttcctgtttt tggaggcttg ctgctggatt
      241 ggcctaaaga gaaagagctt ccggtgttaa gagaggaggg gctggggcag agcccatctc
      301 tgctgatttc aattcatcgt tggcaaaggt gtggagtgtt ttgtggctgg atgacagatt
      361 tatgaaaaga acccagaact gtggctgctg aagttaggaa gcagatttct ggacagtaca
      421 gtggttctcc tcaactgctc aaaaacctca acattgttgg cagtatatcc catcatacca
      481 cagtgcccct tactgaagca gtggatccag tggatttgga agattacctc attactcatc
      541 ctttagctgt ggattctgga cttttaaggg atttgattga attccctcca gatgatattg
      601 aagtggttta tagtcctagg gactgtagaa cccttgtttc agctgtacct gaagaaagtg
      661 aaatggatcc acatgttaga gattgtataa gaagttatac agaagactgg gcaattgtga
      721 tcagaaaata tcataaactg ggaacaggat ttaatcctaa tacattagat aaacagaaag
      781 aaaggcaaaa aggtttgcca aaacaggtct ttgaatccga tgaagctcca gatggcaaca
      841 actaccagga tgaacaagat gatcttaaaa gacgttcaat gtcaatagat gatactccaa
      901 ggggtagctg ggcctgcagt atttttgact tgaaaaattc acttcctgat tctttgcttc
      961 ccaatttact tgatcgaact ccaaatgaag aaatagaccg tcagaatgat gaccaaagga
     1021 aagcaaaccg tcataaggaa ctctttgcct tgcatccatc accagatgag gaagaaccaa
     1081 tagaacgact tagtgttcct gaggtgccca aagaacattt tggtcaaaga cttcttgtaa
     1141 aatgtttatc actcaagttt gagattgaaa ttgaacccat ttttgcaagt ttggctttat
     1201 atgatgtgaa ggaaaagaaa aagatttcag aaaactttta ttttgacctt aattctgagc
     1261 agatgaaagg attattacgt ccacatgtac cacctgctgc cattaccacc ctggcacgat
     1321 cagctatttt ttctatcact tatccttccc aagatgtttt tcttgtaata aagctagaaa
     1381 aagtgctaca gcaaggagac attggagagt gtgcagaacc atatatgatt ttcaaagaag
     1441 cagatgccac caagaataag gaaaaattgg agaagctgaa aagtcaagct gatcagtttt
     1501 gccaaagact tgggaagtat cgcatgcctt ttgcttggac tgcaatccat ttaatgaata
     1561 ttgttagcag tgctgggagt ttggaaagag attctacaga ggtggaaata agcactggag
     1621 aacgaaaggg gtcttggtca gagaggagga attctagtct ggttggcaga agatcacttg
     1681 aaaggacaac aagtggagat gattcttgta acttgaccag ctttcgacct gctactctca
     1741 cagtgacaaa tttttttaag caggaaggag atcgcttaag tgatgaagat ctatacaaat
     1801 tccttgctga tatgagaagg ccatcttctg ttttacggcg actaagacct attacagctc
     1861 agctgaagat agacatttct cctgcacctg aaaatcccca ttattgccta acaccagagc
     1921 tgcttcaagt gaagctttac cctgacagta gagttagacc taccagagaa attttggagt
     1981 ttcctgcaag ggatgtctat gttccaaaca ctacttacag aaaccttctc tacatatacc
     2041 ctcagagtct caattttgcc aaccgtcaag gttctgccag aaatataaca gttaaagtcc
     2101 agtttatgta tggggaggat cctagcaatg ccatgccggt aatctttggt aaatctagct
     2161 gttcagaatt ttcaaaggaa gcctatacag ccgtagtata tcataacagg tctcctgatt
     2221 ttcatgaaga aatcaaggtt aaactccctg ctactttaac tgaccatcat cacttgcttt
     2281 ttacttttta tcatgttagt tgtcaacaaa aacaaaatac tcctcttgaa actcctgttg
     2341 gatacacgtg gataccgatg cttcagaatg gacgattaaa gactgggcag ttttgcctac
     2401 cggtctcact ggaaaaaccg ccacaggctt attctgtact gtctcctgag gttcctctac
     2461 ctggcatgaa atgggtagat aatcacaaag gtgtttttaa tgttgaagtt gttgctgttt
     2521 catctatcca tacacaggat ccttatcttg ataagttttt tgctctggtg aatgctctgg
     2581 atgaacacat gttcccagtc cgaattggag acatgcgaat catggaaaat aacttagaaa
     2641 atgaattgaa gagcagtatt gcagcattga attcatctca gttggaacca gtggtccgat
     2701 ttctttatct tctgcttgat aaactgatac ttttagttgt tagacctcct gtcattgctg
     2761 gccaaatagt aaatctaggt caagcatcat ttgaagccat ggcatcaatt ataaatcggc
     2821 ttcacaaaaa cttggaagga aatcatgacc agcatggcag aaacagcctt ctcgcatcat
     2881 atatctttta tgtttttcgc ctaccgaata cttaccctaa ttcaccatca ccaggtcctg
     2941 ggggtttggg aggatcagtg cattatgcca caatggctag atctgctgtg agacctgcaa
     3001 gccttaattt aaatcgttct cggagcctta gtaatagtaa tccagatata tctggaactc
     3061 ccacgtcacc agatgatgaa gtacggtcaa tcatcggcag taaggctatg gatcgaagtt
     3121 gtaatcgtat gtcttcgcac acagagacgt caagtttctt acaaacatta acgggacgct
     3181 taccaactaa aaagctattt catgaggagc tggctttgca gtgggttgtt tgcagtggca
     3241 gcgttcggga atcagctttg caacaagcct ggttcttttt tgagttaatg gtaaagagca
     3301 tggtgcacca tttatacttt aatgataaac ttgatgcacc aaggaaaagt cgttttccag
     3361 aacgtttcat ggatgacatt gctgctcttg tcagcacaat tgctagtgat atagtttcac
     3421 gatttcagaa ggacacagaa atggttgaga gactcaacac aagccttgca ttctttctca
     3481 atgatctgtt gtctgttatg gacagaggat ttgtgtttag ccttataaag acctgctata
     3541 aacaggtatc ttcaaagctt tattcattac caactccaag tgtcttggtg tccctgaggc
     3601 tggattttct gcgcatcatc tgcagccatg agcactatgt taccttaaac ttaccctgta
     3661 gcctgctaac tccacctgcg tcaccatcac cttctgtttc ttctgcaaca tctcagagtt
     3721 ctggattttc caccactgtg caagaccaga agattgcaaa tatgtttgaa ttgtctgtgc
     3781 ctttccgcca gcaacattat ttggcaggac ttgtgttaac agagctggct gtcattttag
     3841 atcctgatgc tgaaggactg tttggattgc ataagaaagt catcaatatg gtacacaatt
     3901 tactatccag tcacgactca gacccacggt actctgaccc ccagataaag gctcgggtgg
     3961 ctatgttgta tctgcctctg attggcatta tcatggaaac tgttcctcag ctgtatgatt
     4021 ttacagaaac tcacaatcaa cgaggaagac caatctgtat agccaccgat gattatgaga
     4081 gtgagagcgg aagcatgata agccagacag ttgccatggc aattgcagga acatcagttc
     4141 ctcagctaac aaggcccggc agtttcctcc tcacatcaac gagtggcaga caacacacta
     4201 ccttttcagc agaatcaagt cggagtcttt tgatctgtct gctttgggtt ctcaagaatg
     4261 cagatgagac agttttacaa aagtggttta cagatctctc agtcctgcag ctaaaccggc
     4321 tattagatct gctttatctt tgtgtatctt gctttgaata caaaggaaag aaagtgtttg
     4381 aaagaatgaa tagtttgacc tttaagaaat caaaggacat gagagcaaag cttgaggaag
     4441 ctattcttgg aagcataggt gctaggcaag aaatggtgcg ccgaagccga ggacagcttg
     4501 agagaagccc atctggaagt gcctttggga gtcaagaaaa tctgaggtgg aggaaggata
     4561 tgactcactg gcgtcaaaac actgagaagc ttgacaagtc aagagcagag attgaacatg
     4621 aagcactgat tgatggaaat ctggctactg aagcaaatct aatcattttg gatacattag
     4681 agattgttgt ccagacagtt tctgtaacag aatccaaaga gagcatcctt ggtggggtgc
     4741 tgaaagtgct actacatagc atggcctgta atcaaagtgc agtttatcta caacactgtt
     4801 ttgctaccca gagagccctg gtttcaaagt tccctgaact cttgtttgaa gaggagacag
     4861 agcagtgtgc tgatttatgc ctccggcttc tccggcactg tagcagtagc atcggtacaa
     4921 tacggtcaca tgctagtgcc tccctttacc tacttatgag acagaacttt gagattggga
     4981 ataactttgc cagggttaaa atgcaggtaa ccatgtcact gtcttccttg gtgggcacat
     5041 ctcagaattt taatgaagaa ttcttaagac gttctctaaa gactatactg acatatgctg
     5101 aagaagactt ggaattgagg gagacaacat ttcctgatca ggtccaagat ttggttttca
     5161 acctccatat gatcctttct gatactgtta aaatgaagga acaccaggag gatcctgaaa
     5221 tgttgattga tctaatgtac agaattgcca aggggtacca gacctctcca gacctgcggc
     5281 tgacctggtt gcagaacatg gctggcaaac actcagaacg cagcaatcat gctgaagctg
     5341 cccagtgcct cgttcactca gcagcacttg ttgctgaata tctgagcatg ctggaggacc
     5401 ggaaatatct tcctgtggga tgtgtaacat ttcagaatat ttcatctaat gttttagaag
     5461 aatctgcagt ctcagatgat gtggtatctc cagatgaaga aggtatctgc tctggaaagt
     5521 actttactga gtcaggactt gtgggattac tggaacaagc agctgcttct ttctctatgg
     5581 ctggcatgta tgaagcagtt aacgaggttt acaaagtact tattcctatt catgaagcta
     5641 atcgggatgc aaagaaacta tccacgattc atggtaaact tcaagaagca ttcagcaaaa
     5701 ttgttcatca ggatggtaag cggatgtttg gcacctattt tcgtgttggt ttttatggaa
     5761 ccaagttcgg ggatttggat gaacaggaat ttgtttacaa ggagcctgcg ataaccaaac
     5821 ttgcagagat atctcacaga ttggagggat tttatggaga aagatttgga gaggatgtgg
     5881 ttgaagtaat caaggattct aatcctgtag acaagtgtaa attagatcct aacaaggcat
     5941 atattcagat tacctacgtg gagccatact ttgacacata tgagatgaag gacagaatca
     6001 catattttga caaaaattat aatcttcgtc gtttcatgta ctgtacaccc ttcactttag
     6061 atggtcgtgc ccatggggaa cttcatgaac aattcaaacg gaagaccatt ctgactactt
     6121 ctcatgcctt tccttacatt aagacaaggg ttaatgtcac tcacaaagag gagatcatct
     6181 taacaccaat tgaagttgct attgaagaca tgcagaaaaa aacgcaggag ttggcatttg
     6241 ccacacatca ggatccagca gaccccaaaa tgcttcagat ggtactccag ggatctgtag
     6301 gcacaacagt gaatcagggg cctttggaag ttgcccaggt tttcctgtct gaaataccca
     6361 gtgacccaaa gctcttcaga catcataata aactgcgact ctgcttcaaa gattttacta
     6421 aaaggtgtga ggatgcctta agaaaaaata agagcttaat tgggccagat caaaaggagt
     6481 atcaaaggga actggagaga aactatcatc gccttaaaga ggccctacag cctctgataa
     6541 acagaaagat ccctcagtta tacaaggcag tattacctgt tacctgccac agggattcct
     6601 tcagtcgaat gagcctgcgc aaaatggatc tctaatataa atgcacttgt tttattcatt
     6661 tgaaaaaagc catgtattca acattgagtg tgaaaagaat ttaagaactt ttgaaaaaga
     6721 cttgggactt aatcctggaa attgtagtat taatttactc atggaagaat gcagtggcca
     6781 aacaatatca aatggcgatc gctgaagttt gagaatcatg gctgtggttt ctaatgttct
     6841 ggtaatatgc tgttatcttt tttaagacat tttaatgact cacaggtaca cttacattta
     6901 ccattattta taccatagct aatgttaaat ttatttactt taagtttgta ttttttaatt
     6961 tatattacca tttatagatt cgttttggaa ccattttaaa tgtagtaatt cttattttaa
     7021 aggtactatt aaatatgtga atgtttacac taattttact gagactaaaa aaaatttttt
     7081 tactgacaaa agcagagaat aagttgattc aagaaacagt tccaaaaata gcaaaatgaa
     7141 aatcataatt gacactttat ggacccagat aatagcccca aaattaaata aatgaataaa
     7201 ttaatgggtg gaaataaatt attgataact gg
//
LOCUS       XR_004352185            5744 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X9, misc_RNA.
ACCESSION   XR_004352185
VERSION     XR_004352185.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5744
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5744
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761951"
     misc_RNA        1..5744
                     /gene="DOCK7"
                     /product="dedicator of cytokinesis 7, transcript variant
                     X9"
                     /db_xref="GeneID:116761951"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggc
     2881 tatggatcga agttgtaatc gtatgtcttc gcacacagag acgtcaagtt tcttacaaac
     2941 attaacggga cgcttaccaa ctaaaaagct atttcatgag gagctggctt tgcagtgggt
     3001 tgtttgcagt ggcagcgttc gggaatcagc tttgcaacaa gcctggttct tttttgagtt
     3061 aatggtaaag agcatggtgc accatttata ctttaatgat aaacttgatg caccaaggaa
     3121 aagtcgtttt ccagaacgtt tcatggatga cattgctgct cttgtcagca caattgctag
     3181 tgatatagtt tcacgatttc agaaggtgac ggtaacttat ttttttaaac aaaatctgtg
     3241 tttcaagcac acgttaaact atatttgttt ttcttttaat tgtttcccag gacacagaaa
     3301 tggttgagag actcaacaca agccttgcat tctttctcaa tgatctgttg tctgttatgg
     3361 acagaggatt tgtgtttagc cttataaaga cctgctataa acaggtatct tcaaagcttt
     3421 attcattacc aactccaagt gtcttggtgt ccctgaggct ggattttctg cgcatcatct
     3481 gcagccatga gcactatgtt accttaaact taccctgtag cctgctaact ccacctgcgt
     3541 caccatcacc ttctgtttct tctgcaacat ctcagagttc tggattttcc accactgtgc
     3601 aagaccagaa gattgcaaat atgtttgaat tgtctgtgcc tttccgccag caacattatt
     3661 tggcaggact tgtgttaaca gagctggctg tcattttaga tcctgatgct gaaggagtgg
     3721 cagacaacac actacctttt cagcagaatc aagtcggagt cttttgatct gtctgctttg
     3781 ggttctcaag aatgcagatg agacagtttt acaaaagtgg tttacagatc tctcagtcct
     3841 gcagctaaac cggctattag atctgcttta tctttgtgta tcttgctttg aatacaaagg
     3901 aaagaaagtg tttgaaagaa tgaatagttt gacctttaag aaatcaaagg acatgagagc
     3961 aaagcttgag gaagctattc ttggaagcat aggtgctagg caagaaatgg tgcgccgaag
     4021 ccgaggacag cttgagagaa gcccatctgg aagtgccttt gggagtcaag aaaatctgag
     4081 gtggaggaag gatatgactc actggcgtca aaacactgag aagcttgaca agtcaagagc
     4141 agagattgaa catgaagcac tgattgatgg aaatctggct actgaagcaa atctaatcat
     4201 tttggataca ttagagattg ttgtccagac agtttctgta acagaatcca aagagagcat
     4261 ccttggtggg gtgctgaaag tgctactaca tagcatggcc tgtaatcaaa gtgcagttta
     4321 tctacaacac tgttttgcta cccagagagc cctggtttca aagttccctg aactcttgtt
     4381 tgaagaggag acagagcagt gtgctgattt atgcctccgg cttctccggc actgtagcag
     4441 tagcatcggt acaatacggt cacatgctag tgcctccctt tacctactta tgagacagaa
     4501 ctttgagatt gggaataact ttgccagggt taaaatgcag gtaaccatgt cactgtcttc
     4561 cttggtgggc acatctcaga attttaatga agaattctta agacgttctc taaagactat
     4621 actgacatat gctgaagaag acttggaatt gagggagaca acatttcctg atcaggtcca
     4681 agatttggtt ttcaacctcc atatgatcct ttctgatact gttaaaatga aggaacacca
     4741 ggaggatcct gaaatgttga ttgatctaat gtacagaatt gccaaggggt accagacctc
     4801 tccagacctg cggctgacct ggttgcagaa catggctggc aaacactcag aacgcagcaa
     4861 tcatgctgaa gctgcccagt gcctcgttca ctcagcagca cttgttgctg aatatctgag
     4921 catgctggag gaccggaaat atcttcctgt gggatgtgta acatttcaga atatttcatc
     4981 taatgtttta gaagaatctg cagtctcaga tgatgtggta tctccagatg aagaaggtat
     5041 ctgctctgga aagtacttta ctgagtcagg acttgtggga ttactggaac aagcagctgc
     5101 ttctttctct atggctggca tgtatgaagc agttaacgag gtttacaaag tacttattcc
     5161 tattcatgaa gctaatcggg atgcaaagaa actatccacg attcatggta aacttcaaga
     5221 agcattcagc aaaattgttc atcaggatgg taagcggatg tttggcacct attttcgtgt
     5281 tggtttttat ggaaccaagt tcggggattt ggatgaacag gaatttgttt acaaggagcc
     5341 tgcgataacc aaacttgcag agatatctca cagattggag ggattttatg gagaaagatt
     5401 tggagaggat gtggttgaag taatcaagga ttctaatcct gtagacaagt gtaaattaga
     5461 tcctaacaag gcatatattc agattaccta cgtggagcca tactttgaca catatgagat
     5521 gaaggacaga atcacatatt ttgacaaaaa ttataatctt cgtcgtttca tgtactgtac
     5581 acccttcact ttagatggtc gtgcccatgg ggaacttcat gaacaattca aacggaagac
     5641 cattctgact acttctcatg cctttcctta cattaagaca agggttaatg tcactcacaa
     5701 agaggagatc atcttaacac caattgaagt tgctattgaa gaca
//
LOCUS       XR_004352186            5992 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X10, misc_RNA.
ACCESSION   XR_004352186
VERSION     XR_004352186.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5992
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5992
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761951"
     misc_RNA        1..5992
                     /gene="DOCK7"
                     /product="dedicator of cytokinesis 7, transcript variant
                     X10"
                     /db_xref="GeneID:116761951"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggc
     2881 tatggatcga agttgtaatc gtatgtcttc gcacacagag acgtcaagtt tcttacaaac
     2941 attaacggga cgcttaccaa ctaaaaagct atttcatgag gagctggctt tgcagtgggt
     3001 tgtttgcagt ggcagcgttc gggaatcagc tttgcaacaa gcctggttct tttttgagtt
     3061 aatggtaaag agcatggtgc accatttata ctttaatgat aaacttgatg caccaaggaa
     3121 aagtcgtttt ccagaacgtt tcatggatga cattgctgct cttgtcagca caattgctag
     3181 tgatatagtt tcacgatttc agaaggtgac ggtaacttat ttttttaaac aaaatctgtg
     3241 tttcaagcac acgttaaact atatttgttt ttcttttaat tgtttcccag gacacagaaa
     3301 tggttgagag actcaacaca agccttgcat tctttctcaa tgatctgttg tctgttatgg
     3361 acagaggatt tgtgtttagc cttataaaga cctgctataa acaggtatct tcaaagcttt
     3421 attcattacc aactccaagt gtcttggtgt ccctgaggct ggattttctg cgcatcatct
     3481 gcagccatga gcactatgtt accttaaact taccctgtag cctgctaact ccacctgcgt
     3541 caccatcacc ttctgtttct tctgcaacat ctcagagttc tggattttcc accactgtgc
     3601 aagaccagaa gattgcaaat atgtttgaat tgtctgtgcc tttccgccag caacattatt
     3661 tggcaggact tgtgttaaca gagctggctg tcattttaga tcctgatgct gaaggactgt
     3721 ttggattgca taagaaagtc atcaatatgg tacacaattt actatccagt cacgactcag
     3781 acccacggta ctctgacccc cagataaagg ctcgggtggc tatgttgtat ctgcctctga
     3841 ttggcattat catggaaact gttcctcagc tgtatgattt tacagaaact cacaatcaac
     3901 gaggaagacc aatctgtata gccaccgatg attatgagag tgagagcgga agcatgataa
     3961 gccagacagt tgccatggca attgcaggaa catcagttcc tcagctaaca aggcccggca
     4021 gtttcctcct cacatcaacg agtggcagac aacacactac cttttcagca gaatcaagtc
     4081 ggagtctttt gatctgtctg ctttgggttc tcaagaatgc agatgagaca gttttacaaa
     4141 agtggtttac agatctctca gtcctgcagc taaaccggct attagatctg ctttatcttt
     4201 gtgtatcttg ctttgaatac aaaggaaaga aagtgtttga aagaatgaat agtttgacct
     4261 ttaagaaatc aaaggacatg agagcaaagc ttgaggaagc tattcttgga agcataggtg
     4321 ctaggcaaga aatggtgcgc cgaagccgag gacagcttga gagaagccca tctggaagtg
     4381 cctttgggag tcaagaaaat ctgaggtgga ggaaggatat gactcactgg cgtcaaaaca
     4441 ctgagaagct tgacaagtca agagcagaga ttgaacatga agcactgatt gatggaaatc
     4501 tggctactga agcaaatcta atcattttgg atacattaga gattgttgtc cagacagttt
     4561 ctgtaacaga atccaaagag agcatccttg gtggggtgct gaaagtgcta ctacatagca
     4621 tggcctgtaa tcaaagtgca gtttatctac aacactgttt tgctacccag agagccctgg
     4681 tttcaaagtt ccctgaactc ttgtttgaag aggagacaga gcagtgtgct gatttatgcc
     4741 tccggcttct ccggcactgt agcagtagca tcggtacaat acggtcacat gctagtgcct
     4801 ccctttacct acttatgaga cagaactttg agattgggaa taactttgcc agggttaaaa
     4861 tgcaggtaac catgtcactg tcttccttgg tgggcacatc tcagaatttt aatgaagaat
     4921 tcttaagacg ttctctaaag actatactga catatgctga agaagacttg gaattgaggg
     4981 agacaacatt tcctgatcag gtccaagatt tggttttcaa cctccatatg atcctttctg
     5041 atactgttaa aatgaaggaa caccaggagg atcctgaaat gttgattgat ctaatgtaca
     5101 gaattgccaa ggggtaccag acctctccag acctgcggct gacctggttg cagaacatgg
     5161 ctggcaaaca ctcagaacgc agcaatcatg ctgaagctgc ccagtgcctc gttcactcag
     5221 cagcacttgt tgctgaatat ctgagcatgc tggaggaccg gaaatatctt cctgtgggat
     5281 gtgtaacatt tcagaatatt tcatctaatg ttttagaaga atctgcagtc tcagatgatg
     5341 tggtatctcc agatgaagaa ggctggcatg tatgaagcag ttaacgaggt ttacaaagta
     5401 cttattccta ttcatgaagc taatcgggat gcaaagaaac tatccacgat tcatggtaaa
     5461 cttcaagaag cattcagcaa aattgttcat caggatggta agcggatgtt tggcacctat
     5521 tttcgtgttg gtttttatgg aaccaagttc ggggatttgg atgaacagga atttgtttac
     5581 aaggagcctg cgataaccaa acttgcagag atatctcaca gattggaggg attttatgga
     5641 gaaagatttg gagaggatgt ggttgaagta atcaaggatt ctaatcctgt agacaagtgt
     5701 aaattagatc ctaacaaggc atatattcag attacctacg tggagccata ctttgacaca
     5761 tatgagatga aggacagaat cacatatttt gacaaaaatt ataatcttcg tcgtttcatg
     5821 tactgtacac ccttcacttt agatggtcgt gcccatgggg aacttcatga acaattcaaa
     5881 cggaagacca ttctgactac ttctcatgcc tttccttaca ttaagacaag ggttaatgtc
     5941 actcacaaag aggagatcat cttaacacca attgaagttg ctattgaaga ca
//
LOCUS       XR_004352187            5908 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X11, misc_RNA.
ACCESSION   XR_004352187
VERSION     XR_004352187.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5908
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5908
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761951"
     misc_RNA        1..5908
                     /gene="DOCK7"
                     /product="dedicator of cytokinesis 7, transcript variant
                     X11"
                     /db_xref="GeneID:116761951"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtaatctt
     1921 tggtaaatct agctgttcag aattttcaaa ggaagcctat acagccgtag tatatcataa
     1981 caggtctcct gattttcatg aagaaatcaa ggttaaactc cctgctactt taactgacca
     2041 tcatcacttg ctttttactt tttatcatgt tagttgtcaa caaaaacaaa atactcctct
     2101 tgaaactcct gttggataca cgtggatacc gatgcttcag aatggacgat taaagactgg
     2161 gcagttttgc ctaccggtct cactggaaaa accgccacag gcttattctg tactgtctcc
     2221 tgaggttcct ctacctggca tgaaatgggt agataatcac aaaggtgttt ttaatgttga
     2281 agttgttgct gtttcatcta tccatacaca ggatccttat cttgataagt tttttgctct
     2341 ggtgaatgct ctggatgaac acatgttccc agtccgaatt ggagacatgc gaatcatgga
     2401 aaataactta gaaaatgaat tgaagagcag tattgcagca ttgaattcat ctcagttgga
     2461 accagtggtc cgatttcttt atcttctgct tgataaactg atacttttag ttgttagacc
     2521 tcctgtcatt gctggccaaa tagtaaatct aggtcaagca tcatttgaag ccatggcatc
     2581 aattataaat cggcttcaca aaaacttgga aggaaatcat gaccagcatg gcagaaacag
     2641 ccttctcgca tcatatatct tttatgtttt tcgcctaccg aatacttacc ctaattcacc
     2701 atcaccaggt cctgggggtt tgggaggatc agtgcattat gccacaatgg ctagatctgc
     2761 tgtgagacct gcaagcctta atttaaatcg ttctcggagc cttagtaata gtaatccaga
     2821 tatatctgga actcccacgt caccagatga tgaagtacgg tcaatcatcg gcagtaaggc
     2881 tatggatcga agttgtaatc gtatgtcttc gcacacagag acgtcaagtt tcttacaaac
     2941 attaacggga cgcttaccaa ctaaaaagct atttcatgag gagctggctt tgcagtgggt
     3001 tgtttgcagt ggcagcgttc gggaatcagc tttgcaacaa gcctggttct tttttgagtt
     3061 aatggtaaag agcatggtgc accatttata ctttaatgat aaacttgatg caccaaggaa
     3121 aagtcgtttt ccagaacgtt tcatggatga cattgctgct cttgtcagca caattgctag
     3181 tgatatagtt tcacgatttc agaaggtgac ggtaacttat ttttttaaac aaaatctgtg
     3241 tttcaagcac acgttaaact atatttgttt ttcttttaat tgtttcccag gacacagaaa
     3301 tggttgagag actcaacaca agccttgcat tctttctcaa tgatctgttg tctgttatgg
     3361 acagaggatt tgtgtttagc cttataaaga cctgctataa acaggtatct tcaaagcttt
     3421 attcattacc aactccaagt gtcttggtgt ccctgaggct ggattttctg cgcatcatct
     3481 gcagccatga gcactatgtt accttaaact taccctgtag cctgctaact ccacctgcgt
     3541 caccatcacc ttctgtttct tctgcaacat ctcagagttc tggattttcc accactgtgc
     3601 aagaccagaa gattgcaaat atgtttgaat tgtctgtgcc tttccgccag caacattatt
     3661 tggcaggact tgtgttaaca gagctggctg tcattttaga tcctgatgct gaaggaaact
     3721 cacaatcaac gaggaagacc aatctgtata gccaccgatg attatgagag tgagagcgga
     3781 agcatgataa gccagacagt tgccatggca attgcaggaa catcagttcc tcagctaaca
     3841 aggcccggca gtttcctcct cacatcaacg agtggcagac aacacactac cttttcagca
     3901 gaatcaagtc ggagtctttt gatctgtctg ctttgggttc tcaagaatgc agatgagaca
     3961 gttttacaaa agtggtttac agatctctca gtcctgcagc taaaccggct attagatctg
     4021 ctttatcttt gtgtatcttg ctttgaatac aaaggaaaga aagtgtttga aagaatgaat
     4081 agtttgacct ttaagaaatc aaaggacatg agagcaaagc ttgaggaagc tattcttgga
     4141 agcataggtg ctaggcaaga aatggtgcgc cgaagccgag gacagcttga gagaagccca
     4201 tctggaagtg cctttgggag tcaagaaaat ctgaggtgga ggaaggatat gactcactgg
     4261 cgtcaaaaca ctgagaagct tgacaagtca agagcagaga ttgaacatga agcactgatt
     4321 gatggaaatc tggctactga agcaaatcta atcattttgg atacattaga gattgttgtc
     4381 cagacagttt ctgtaacaga atccaaagag agcatccttg gtggggtgct gaaagtgcta
     4441 ctacatagca tggcctgtaa tcaaagtgca gtttatctac aacactgttt tgctacccag
     4501 agagccctgg tttcaaagtt ccctgaactc ttgtttgaag aggagacaga gcagtgtgct
     4561 gatttatgcc tccggcttct ccggcactgt agcagtagca tcggtacaat acggtcacat
     4621 gctagtgcct ccctttacct acttatgaga cagaactttg agattgggaa taactttgcc
     4681 agggttaaaa tgcaggtaac catgtcactg tcttccttgg tgggcacatc tcagaatttt
     4741 aatgaagaat tcttaagacg ttctctaaag actatactga catatgctga agaagacttg
     4801 gaattgaggg agacaacatt tcctgatcag gtccaagatt tggttttcaa cctccatatg
     4861 atcctttctg atactgttaa aatgaaggaa caccaggagg atcctgaaat gttgattgat
     4921 ctaatgtaca gaattgccaa ggggtaccag acctctccag acctgcggct gacctggttg
     4981 cagaacatgg ctggcaaaca ctcagaacgc agcaatcatg ctgaagctgc ccagtgcctc
     5041 gttcactcag cagcacttgt tgctgaatat ctgagcatgc tggaggaccg gaaatatctt
     5101 cctgtgggat gtgtaacatt tcagaatatt tcatctaatg ttttagaaga atctgcagtc
     5161 tcagatgatg tggtatctcc agatgaagaa ggtatctgct ctggaaagta ctttactgag
     5221 tcaggacttg tgggattact ggaacaagca gctgcttctt tctctatggc tggcatgtat
     5281 gaagcagtta acgaggttta caaagtactt attcctattc atgaagctaa tcgggatgca
     5341 aagaaactat ccacgattca tggtaaactt caagaagcat tcagcaaaat tgttcatcag
     5401 gtaatgattg atggtaagcg gatgtttggc acctattttc gtgttggttt ttatggaacc
     5461 aagttcgggg atttggatga acaggaattt gtttacaagg agcctgcgat aaccaaactt
     5521 gcagagatat ctcacagatt ggagggattt tatggagaaa gatttggaga ggatgtggtt
     5581 gaagtaatca aggattctaa tcctgtagac aagtgtaaat tagatcctaa caaggcatat
     5641 attcagatta cctacgtgga gccatacttt gacacatatg agatgaagga cagaatcaca
     5701 tattttgaca aaaattataa tcttcgtcgt ttcatgtact gtacaccctt cactttagat
     5761 ggtcgtgccc atggggaact tcatgaacaa ttcaaacgga agaccattct gactacttct
     5821 catgcctttc cttacattaa gacaagggtt aatgtcactc acaaagagga gatcatctta
     5881 acaccaattg aagttgctat tgaagaca
//
LOCUS       XM_032648558            2689 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X12, mRNA.
ACCESSION   XM_032648558
VERSION     XM_032648558.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2689
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 70%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761951"
     CDS             104..2098
                     /gene="DOCK7"
                     /codon_start=1
                     /product="dedicator of cytokinesis protein 7 isoform X9"
                     /protein_id="XP_032504449.1"
                     /db_xref="GeneID:116761951"
                     /translation="MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGSIS
                     HHTTVPLTEAVDPVDLEDYLITHPLAVDSGLLRDLIEFPPDDIEVVYSPRDCRTLVSA
                     VPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFES
                     DEAPDGNNYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDSLLPNLLDRTPNEE
                     IDRQNDDQRKANRHKELFALHPSPDEEEPIERLSVPEVPKEHFGQRLLVKCLSLKFEI
                     EIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSIT
                     YPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLG
                     KYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERT
                     TSGDDSCNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQ
                     LKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYI
                     YPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPSPSCVQPYWQLYHSFIWCHLSVFS
                     LFLWAVSFYGYMLVSLSQPLDCELLEGKDHVLLISVSCLS"
     misc_feature    257..586
                     /gene="DOCK7"
                     /note="Dedicator of cytokinesis C/D, N terminal; Region:
                     DOCK_C-D_N; pfam11878"
                     /db_xref="CDD:463380"
     misc_feature    1781..>1903
                     /gene="DOCK7"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 ggtccggagc ggggactgga ggaggcggcg agggagggag cgggagtgaa gaggcactcg
       61 cccgcccgtc cgcgcccaga ccgccgcagc cgccttagca gccatggccg agcgccgcgc
      121 ctttgcccag aagatcagca gaactgtggc tgctgaagtt aggaagcaga tttctggaca
      181 gtacagtggt tctcctcaac tgctcaaaaa cctcaacatt gttggcagta tatcccatca
      241 taccacagtg ccccttactg aagcagtgga tccagtggat ttggaagatt acctcattac
      301 tcatccttta gctgtggatt ctggactttt aagggatttg attgaattcc ctccagatga
      361 tattgaagtg gtttatagtc ctagggactg tagaaccctt gtttcagctg tacctgaaga
      421 aagtgaaatg gatccacatg ttagagattg tataagaagt tatacagaag actgggcaat
      481 tgtgatcaga aaatatcata aactgggaac aggatttaat cctaatacat tagataaaca
      541 gaaagaaagg caaaaaggtt tgccaaaaca ggtctttgaa tccgatgaag ctccagatgg
      601 caacaactac caggatgaac aagatgatct taaaagacgt tcaatgtcaa tagatgatac
      661 tccaaggggt agctgggcct gcagtatttt tgacttgaaa aattcacttc ctgattcttt
      721 gcttcccaat ttacttgatc gaactccaaa tgaagaaata gaccgtcaga atgatgacca
      781 aaggaaagca aaccgtcata aggaactctt tgccttgcat ccatcaccag atgaggaaga
      841 accaatagaa cgacttagtg ttcctgaggt gcccaaagaa cattttggtc aaagacttct
      901 tgtaaaatgt ttatcactca agtttgagat tgaaattgaa cccatttttg caagtttggc
      961 tttatatgat gtgaaggaaa agaaaaagat ttcagaaaac ttttattttg accttaattc
     1021 tgagcagatg aaaggattat tacgtccaca tgtaccacct gctgccatta ccaccctggc
     1081 acgatcagct attttttcta tcacttatcc ttcccaagat gtttttcttg taataaagct
     1141 agaaaaagtg ctacagcaag gagacattgg agagtgtgca gaaccatata tgattttcaa
     1201 agaagcagat gccaccaaga ataaggaaaa attggagaag ctgaaaagtc aagctgatca
     1261 gttttgccaa agacttggga agtatcgcat gccttttgct tggactgcaa tccatttaat
     1321 gaatattgtt agcagtgctg ggagtttgga aagagattct acagaggtgg aaataagcac
     1381 tggagaacga aaggggtctt ggtcagagag gaggaattct agtctggttg gcagaagatc
     1441 acttgaaagg acaacaagtg gagatgattc ttgtaacttg accagctttc gacctgctac
     1501 tctcacagtg acaaattttt ttaagcagga aggagatcgc ttaagtgatg aagatctata
     1561 caaattcctt gctgatatga gaaggccatc ttctgtttta cggcgactaa gacctattac
     1621 agctcagctg aagatagaca tttctcctgc acctgaaaat ccccattatt gcctaacacc
     1681 agagctgctt caagtgaagc tttaccctga cagtagagtt agacctacca gagaaatttt
     1741 ggagtttcct gcaagggatg tctatgttcc aaacactact tacagaaacc ttctctacat
     1801 ataccctcag agtctcaatt ttgccaaccg tcaaggttct gccagaaata taacagttaa
     1861 agtccagttt atgtatgggg aggatcctag caatgccatg ccgagcccca gctgcgtcca
     1921 gccatattgg cagttatacc actccttcat ttggtgccac cttagtgtct tctcactttt
     1981 tttatgggct gtttcatttt atggttatat gcttgtttct ttatctcagc cactagactg
     2041 tgagctcctt gagggcaagg accatgtctt actcatatct gtatcttgcc tatcatagtg
     2101 cttggcatta attgtcgctc agtctatgtt gatgaatgat taaaaataca tgttaaatgg
     2161 tcaaaggaac acttttcact ttatatcatt gcatgttatg aaaataagtt actttttgaa
     2221 aaacaatagc ttctcagagg gaaaaaaatg tactgcattc ctttctcttg tgtattatta
     2281 gtgatatgaa aatataatgc ttttatgttt atgtgagtgg ctggtttgaa atagtgtata
     2341 aacacagaca cattatattt gcttattttt tttaaaaatg aagactgtcc aaatgaatct
     2401 taagataatt ttttgatcat acaatgttga tatgataaaa tcataaactt cataattttg
     2461 gcactggaac agcattttta taaaaacata gtaaggtagt cttagaaatt gatgaaatta
     2521 gacatataca ggagactcat aattattata cttttgcata cccttaaaat aaaaggacct
     2581 gcttgaaatg ttgcaaaaag aaacacagat atctgttacg ttctttttat ttaaggatgg
     2641 tgcaacttaa cccctttgta taaggagtaa actttgagtt gttttacca
//
LOCUS       XR_004352190            6637 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dedicator of cytokinesis 7 (DOCK7),
            transcript variant X13, misc_RNA.
ACCESSION   XR_004352190
VERSION     XR_004352190.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6637
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6637
                     /gene="DOCK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     82% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116761951"
     misc_RNA        1..6637
                     /gene="DOCK7"
                     /product="dedicator of cytokinesis 7, transcript variant
                     X13"
                     /db_xref="GeneID:116761951"
ORIGIN      
        1 agcctcacgg gtccggagcg gggactggag gaggcggcga gggagggagc gggagtgaag
       61 aggcactcgc ccgcccgtcc gcgcccagac cgccgcagcc gccttagcag ccatggccga
      121 gcgccgcgcc tttgcccaga agatcagcag aactgtggct gctgaagtta ggaagcagat
      181 ttctggacag tacagtggtt ctcctcaact gctcaaaaac ctcaacattg ttggcagtat
      241 atcccatcat accacagtgc cccttactga agcagtggat ccagtggatt tggaagatta
      301 cctcattact catcctttag ctgtggattc tggactttta agggatttga ttgaattccc
      361 tccagatgat attgaagtgg tttatagtcc tagggactgt agaacccttg tttcagctgt
      421 acctgaagaa agtgaaatgg atccacatgt tagagattgt ataagaagtt atacagaaga
      481 ctgggcaatt gtgatcagaa aatatcataa actgggaaca ggatttaatc ctaatacatt
      541 agataaacag aaagaaaggc aaaaaggttt gccaaaacag gtctttgaat ccgatgaagc
      601 tccagatggc aacaactacc aggatgaaca agatgatctt aaaagacgtt caatgtcaat
      661 agatgatact ccaaggggta gctgggcctg cagtattttt gacttgaaaa attcacttcc
      721 tgattctttg cttcccaatt tacttgatcg aactccaaat gaagaaatag accgtcagaa
      781 tgatgaccaa aggaaagcaa accgtcataa ggaactcttt gccttgcatc catcaccaga
      841 tgaggaagaa ccaatagaac gacttagtgt tcctgaggtg cccaaagaac attttggtca
      901 aagacttctt gtaaaatgtt tatcactcaa gtttgagatt gaaattgaac ccatttttgc
      961 aagtttggct ttatatgatg tgaaggaaaa gaaaaagatt tcagaaaact tttattttga
     1021 ccttaattct gagcagatga aaggattatt acgtccacat gtaccacctg ctgccattac
     1081 caccctggca cgatcagcta ttttttctat cacttatcct tcccaagatg tttttcttgt
     1141 aataaagcta gaaaaagtgc tacagcaagg agacattgga gagtgtgcag aaccatatat
     1201 gattttcaaa gaagcagatg ccaccaagaa taaggaaaaa ttggagaagc tgaaaagtca
     1261 agctgatcag ttttgccaaa gacttgggaa gtatcgcatg ccttttgctt ggactgcaat
     1321 ccatttaatg aatattgtta gcagtgctgg gagtttggaa agagattcta cagaggtgga
     1381 aataagcact ggagaacgaa aggggtcttg gtcagagagg aggaattcta gtctggttgg
     1441 cagaagatca cttgaaagga caacaagtgg agatgattct tgtaacttga ccagctttcg
     1501 acctgctact ctcacagtga caaatttttt taagcaggaa ggagatcgct taagtgatga
     1561 agatctatac aaattccttg ctgatatgag aaggccatct tctgttttac ggcgactaag
     1621 acctattaca gctcagctga agatagacat ttctcctgca cctgaaaatc cccattattg
     1681 cctaacacca gagctgcttc aagtgaagct ttaccctgac agtagagtta gacctaccag
     1741 agaaattttg gagtttcctg caagggatgt ctatgttcca aacactactt acagaaacct
     1801 tctctacata taccctcaga gtctcaattt tgccaaccgt caaggttctg ccagaaatat
     1861 aacagttaaa gtccagttta tgtatgggga ggatcctagc aatgccatgc cggtctcctg
     1921 attttcatga agaaatcaag gttaaactcc ctgctacttt aactgaccat catcacttgc
     1981 tttttacttt ttatcatgtt agttgtcaac aaaaacaaaa tactcctctt gaaactcctg
     2041 ttggatacac gtggataccg atgcttcaga atggacgatt aaagactggg cagttttgcc
     2101 taccggtctc actggaaaaa ccgccacagg cttattctgt actgtctcct gaggttcctc
     2161 tacctggcat gaaatgggta gataatcaca aaggtgtttt taatgttgaa gttgttgctg
     2221 tttcatctat ccatacacag gatccttatc ttgataagtt ttttgctctg gtgaatgctc
     2281 tggatgaaca catgttccca gtccgaattg gagacatgcg aatcatggaa aataacttag
     2341 aaaatgaatt gaagagcagt attgcagcat tgaattcatc tcagttggaa ccagtggtcc
     2401 gatttcttta tcttctgctt gataaactga tacttttagt tgttagacct cctgtcattg
     2461 ctggccaaat agtaaatcta ggtcaagcat catttgaagc catggcatca attataaatc
     2521 ggcttcacaa aaacttggaa ggaaatcatg accagcatgg cagaaacagc cttctcgcat
     2581 catatatctt ttatgttttt cgcctaccga atacttaccc taattcacca tcaccaggtc
     2641 ctgggggttt gggaggatca gtgcattatg ccacaatggc tagatctgct gtgagacctg
     2701 caagccttaa tttaaatcgt tctcggagcc ttagtaatag taatccagat atatctggaa
     2761 ctcccacgtc accagatgat gaagtacggt caatcatcgg cagtaaggta aactgaagat
     2821 acgcgtctat aaatttggtt ttcaggttgt gaacaaatga gaaatgtcca attgttttac
     2881 tttttcttaa ttttaaaatg tatttgagtt agtaataaga aagaaattgt acatttctat
     2941 tctatcagtg aacacataaa tgtttgatgt ttctattaaa tgtttttgct attacaaact
     3001 ggtttgtgtg ctctgctcaa gaatatctgc caaattaaaa aatgtgtgca ggatgaccag
     3061 tcacatacga ctcattgtct gtctgattat tatgtgaaaa atggttagat tgattttcta
     3121 gaggattaag agagacctgt gactgctgtg tagctgggac atactatcaa cttaaaatat
     3181 gagcctccct tctccaaaag tatcaagaac aataattaac aattaataga gctacatttc
     3241 acatggaaaa ctctatgtaa ggtgcaccag gattagaaaa atatgattta tttaatcatg
     3301 gttagtgatt atcccagaca ataagggaga ggccagccaa tataagatcc agctatattt
     3361 tatgtaagca tcaatcttta ttacccccca aaatatactt aaggaacaag tagtcattac
     3421 ctttctatag ttaaagtaca aaaataactc agagtttgaa aatcaaagtg gaaaaaaaga
     3481 acagtaagac tgaggccaag aaatcacatt atgttgggtt ttgaccaaac cattttaaat
     3541 tgattttttg ctattagaaa gaaggaagat accgttgtta tggaatcaca gccaactttt
     3601 ctttggcatt ttagtctgtt aattaggata tgaggaagaa ttagtaaacg tgttttgggg
     3661 tgtgttttta acccttagcc tgaactaaat agaccttatt atttttttaa tgatctgagc
     3721 ttgtttgtgt gaaatacttg aatatggatc aaacacatca gaattactta aatctactca
     3781 tatagttaca gaaattttac attcagacac ttctaataaa ctttagcatt gcacatttta
     3841 aagtaccttt tacgtaattt gaaagtaatt tctcacagat caaaaataca ttttttaaag
     3901 taatctctta cagatgaaaa aaatattttg tagccttata atttaaaaaa taaattaaac
     3961 atgaatttca ataacttaaa gatccaaata ggtgttactc taattaaaca aactttcact
     4021 ttttgtgaac ttttgagaaa atgatgttca gatgtattta catggttact gcagagtaac
     4081 ctgagtaata taggaattac aaaagagaca gcttttctcc ctccacatat ctttccatgt
     4141 ctaggaagag aaggtttttt atccttgtct tcattcttga tcttttctca ttgtaatgga
     4201 ggtaatacta aacataattt acgtacgtaa agacagttct tcagtggaat gaatctcatt
     4261 tgtgaattat aagaactttt cctattaaag agctttagac gccatttttc tcaaggttct
     4321 acttttgaaa catctcttaa tttctgtaag atttgcatta tgcttcattt agcataattc
     4381 tagagttttc ctttatatat gatgtatttg atagattata acatcaagat ttagaacaaa
     4441 agtgtacatg tattggaatg attatttgtc ttttttcaag tggttcataa aatgggacat
     4501 aataataatg taaacttgct tctggtatta tatacataaa cttttgagaa agccgtcata
     4561 agatgagact ttgtcttatg acagtacagt cttgtcctaa tcaaatttta ttcaaatggt
     4621 ttttgtgtgt tctttttttt tttttttttt ggttgcatta tttttaatta gtttttttgt
     4681 ttttttgcgg tacgcgggcc tctcactgtt gtggcctctc ccgttgtgga gcacaggctc
     4741 cagacgcgca ggctcagcgg ccatggctca tgggcccagc cggtccgcgg cacgtgggat
     4801 cttcccagac cggggcacga acccgcgtcc cctgcatcgg caggcagact ctcaaccact
     4861 gtgccaccag ggaagccccc tggttgcatt atttttgata gctacctacc ttcattttgg
     4921 actatcattt agtcataatc cctaataata atggtatata attttatctc attgaaaaat
     4981 tataaggaat ctgaagttta tttatagcta ctctttattt attctgattt tattggcttg
     5041 gaaattagag aagctcttct ttaatgattt ttgtctttca ctctgcctta gccatggtca
     5101 tacccttagt cttgtcatga tgaataactt taatcctcat tatctcaatt tcatgcatct
     5161 tgttctctaa ccattagctc atatttttct gcctagtacc ccaactccaa caatttctct
     5221 gctcggcaac ctccaatcac ttgatcgtat gaccttttta ctgtacctca cgcccctaat
     5281 gttctttcct ccaatttagc cagcttaaat tccatgatca atcattataa ttattaccat
     5341 tataaacaaa cgtcaattcc cttatctttc ccttacttca ttttacttgc ttagccaaac
     5401 ctcaaaccat agctgaattc agttgactgc ctgtgccgtt aaacatgctt tgagaaaaaa
     5461 aaaaaaaaaa aacatgcttt gagaaatacc atgataactg gtctcatttg aaattaaagg
     5521 ccatgaacct caagagagcc cttaatgctg tcaagcaatt atactatatt tctttattcc
     5581 atttactttc ccattctccc agaaaaaggt ttaatgcctt ctttggtacc tcaaaccctc
     5641 taacagctcc ccaccaatcc ccctcctcac tttatctcct acttcattaa gaaaattgag
     5701 gccatcagaa gaaaactttt gtcacctttg accatcacat ctacctatcc actaccatct
     5761 actactacct actacttaaa actctgctat agatgaactg tccatttccc taagtccatt
     5821 ccctatttgt atacaaccat ctatcccctt tcacctactc aagatcctca ctccagcagt
     5881 tctttcatca ctgttctaca tcatcagttt ctccccatct actaaatcaa cccatcccat
     5941 aaaatgggat aaaaaataaa atttttaaaa tttctcccat aaaaaaactc ctctctagta
     6001 tttctgctgg tagcttcttc atcatttctc tgctaccttt tgtagtagaa ttccttagaa
     6061 gagttttcca tacttgctgt ctccaattct tttactctcg ttctctaact cctgttaccc
     6121 tacttcaaac atattccttg gatcttcagc ccatactgcc cttctaatgc ccccagtgct
     6181 ctccatgttc ttaaatccga aggttaaatc tcaacacttg gctgaattta ccttacagca
     6241 gcttttgaca cagttaattc tccagtttat tctatttact tagcttctag gttactacac
     6301 tatcttgatt ttcctcttta ctgattatac cttttcagtc tcctttgtag attcttcttt
     6361 ttctgatctc ttaatttgga agtgccccag gcctctgtcc ttatttcttg tcttctcttg
     6421 tcttgttttc tcttttctct acactcactc acttcatgat cttatgaagt cctgttgttg
     6481 taagtatcac tttatgctga tatctcacaa aaattgtatt tcaagtacag atctctctct
     6541 ggaattctaa actcagctgc cttttgtaaa tcctttagtt cagatttgca tatatgttaa
     6601 aggtagagcc acttctcatc acctctagta ctgccat
//
LOCUS       XM_032648571            3633 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin specific peptidase 1 (USP1),
            transcript variant X1, mRNA.
ACCESSION   XM_032648571
VERSION     XM_032648571.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3633
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3633
                     /gene="USP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 17 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116761989"
     CDS             452..2797
                     /gene="USP1"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 1 isoform
                     X1"
                     /protein_id="XP_032504462.1"
                     /db_xref="GeneID:116761989"
                     /translation="MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQE
                     NEEKTSEYRGSEIDQVVPAAQSSPVNCEKRENLLPFVGLNNLGNTCYLNSILQVLYFC
                     PGFKSGVKHLFNIISRKKEALKDEASPKDKGSCKEDSSASYELICSLQSLIISVEQLQ
                     ASFLLNPEKYTDELATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLL
                     KKEVKNVAELSTKVEEKHEKEEMSGNNSMEMDSMRHCEDYKEKLPKVNGKRKSDTEFG
                     NMKKKVKVSKEHQSLEENQRQTRSKRKATVDSLDIPAKIIPKYISENESARPSQKKSR
                     VKINWLKSAAKQPSIISKFCSLGKITTNQESKGQSKENEYDLEEDLGKYENDNTANGC
                     GLESPGNNVMPANEVKPINKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
                     DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHY
                     TEAERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLKLSLEEWSTK
                     PTNDSYGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKENFVIDQMCEIGKPEPLN
                     EEEARGVVENYDDEEVSIRVSGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNKASN
                     PDKVASTAFAENRNSETNNTNGTHESDRNKESNDQTGINMSGFENKISYVVQSLKEYE
                     GKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLLFYKKL"
     misc_feature    623..2236
                     /gene="USP1"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; Region:
                     Peptidase_C19O; cd02671"
                     /db_xref="CDD:239136"
ORIGIN      
        1 acaagggtcc tgagactgag gaaaacgcgc caagttcccg tcggcggtgg agtgaggaag
       61 accccagcgg ttcgggtgcc gggcgagcgg agccgcttct ggccctcctt gccgtcccgg
      121 gacggggacg ggggcgggcg cggttgggcg ccgcttcggg gatgtagtcg gtgccggcgc
      181 caggcaggac cgagcggcag cccgggttcc cgctcttgag agcgaatggt cactcccctg
      241 cggggagggc gatccggcca gcttttccgt gggtcgcggg cccccgcagg ctcggggcaa
      301 gggctcacct gtcgtacccg ccctcagccc ggttagactc gtcggcgtca ccgccgcgga
      361 cctcgctctg ggccatgacc agatatgatt ggtgattaca aggtccctgt ataaattaat
      421 tcttgtcaac tccttgggat ttgaagagaa aatgcccggt gtcataccta gtgaaagtaa
      481 tgggctttca agaggtagtc catcaaaaaa aaacagactt tccttgaagt tttttcagaa
      541 aaaggaaacc aagagagcct tggatttcac agattctcaa gaaaacgaag aaaaaacttc
      601 tgaatataga ggatctgaaa ttgatcaagt tgttcctgca gcacagtcct cacctgtcaa
      661 ctgtgagaag agagaaaact tgttaccgtt tgtgggactg aataatctcg gcaatacttg
      721 ttatcttaat agtatacttc aggtattata tttttgtcct ggttttaaat ctggagtgaa
      781 gcacttattt aatattattt caaggaagaa agaagcccta aaagatgaag ccagtccaaa
      841 agataaggga agttgcaaag aagattcttc agcaagttat gaactaatat gcagcttaca
      901 gtccttgatc atttcagtcg aacagcttca ggctagtttt ctcttaaatc cagagaaata
      961 tactgatgaa cttgctactc agccaaggcg actacttaac acactcaggg aactcaaccc
     1021 tatgtatgaa ggatatctac agcatgatgc acaggaagta ttacagtgta ttttgggaaa
     1081 cattcaagaa acatgccaac tcctaaaaaa agaagtaaaa aatgtggcag agttatctac
     1141 taaggtagaa gaaaaacatg agaaagagga aatgagtggt aataacagca tggagatgga
     1201 cagtatgagg cattgtgaag actataaaga aaaattgcca aaagtaaatg ggaaaagaaa
     1261 aagtgacact gaatttggta acatgaagaa aaaagttaaa gtctctaagg aacaccagtc
     1321 tttggaagaa aaccagagac aaaccagatc aaaaagaaaa gctacagttg attcattaga
     1381 tattcctgct aaaataatcc ccaagtacat ttctgaaaat gagagtgcaa gaccctcaca
     1441 aaagaaatca agagttaaaa taaactggtt aaagtctgca gctaagcaac ccagcattat
     1501 ttctaaattc tgtagtctgg gtaaaataac aacaaaccaa gaatccaaag gacaatctaa
     1561 agaaaatgaa tatgatcttg aagaggactt ggggaagtat gagaatgata atacagctaa
     1621 tggttgtgga cttgaatctc cagggaataa tgttatgcct gctaatgaag ttaagcccat
     1681 aaacaaaggt gcagagcaaa ttggttttga gctagtggag aaattatttc aaggtcagct
     1741 ggtattaagg actcgttgct tagaatgtga aagtttaaca gaaagaagag aagattttca
     1801 agacatcagt gtaccagtgc aagaagatga gctttccaaa gtagaggaga gttctgaaat
     1861 ttctccagag ccaaaaacag aaatgaagac cctgagatgg gcaatttcac agtttgcttc
     1921 agtggagagg attgtaggag aagataaata tttctgtgaa aattgccatc attatactga
     1981 agctgaacga agtcttttgt ttgacaaaat gcctgaagtt ataactattc atttgaagtg
     2041 ctttgctgct agtggcttgg agtttgattg ttatggtggt ggactttcca agatcaacac
     2101 tcctttactg acacctctta aactgtcact agaagaatgg agcacaaagc caaccaacga
     2161 cagctatgga ttatttgcag ttgtgatgca tagtggcatt acaattagta gtgggcatta
     2221 tactgcttct gttaaagtca ctgaccttaa cagtttagaa ctagataagg aaaattttgt
     2281 gatcgaccaa atgtgtgaaa taggtaagcc agaaccattg aatgaggagg aagcaagggg
     2341 tgtggtcgaa aactatgacg atgaagaagt gtcgattaga gtcagtggaa atacccagcc
     2401 aagtaaagtt ttgaacaaaa aaaatgtaga agctattgga cttcttggag gacaaaagag
     2461 taaagcagat tatgagttat acaacaaagc atctaatcct gataaagttg ccagtacagc
     2521 atttgctgaa aatagaaatt ctgagactaa caatactaat gggacccatg aatctgatag
     2581 aaacaaggaa tccaatgacc aaacaggcat taacatgagt ggttttgaaa acaaaatttc
     2641 atatgtagtg caaagcttaa aggagtatga ggggaagtgg ttgctttttg atgattctga
     2701 agtgaaagtt actgaagaga aggacttttt aaattctctt tccccttcta catctcctac
     2761 atctactcct tacttgctat tttataagaa attatagagt gagtgtattt tccttgtgta
     2821 tatattaaac agacctggac aaacatcggt aaattgatta catcaaaaag tctttagctt
     2881 atcttttgaa gctattgggt attattggtt tctctgggtt tttatataaa tagtaaaatt
     2941 tgagttattg aaatccatgt taatttttag aattcatttt ccttagtgga gactagtgat
     3001 tgatgcatta gcttctggga acaaacttgt ataggttctt aactgaatta ttcaaaatgg
     3061 aagcatttaa acactttaaa tttacaccta tcttttgtgt ttgctttttc aaataaagtg
     3121 cttgtatttg tatctccata ttttggagta cttatcatct acatgatgtt tataggttct
     3181 gtggtttttc agctaagaag cagaatctca tttcagtaca tttagttttg taagtcataa
     3241 agccagatct tggatgggct gtattagagg cacgtgtatg tattcacaat agtgcacatt
     3301 ttgtgccttc aatcactttg aaaagcgtct cagaaaacct ggagtcagtc ctcttctatc
     3361 tatcttcaca agaattttat atgtatttat gaaaatgatt ctgtacccta gtaaatcttt
     3421 ttcagtgtgg actaatttgt atctcttcat agtcatactc tgcacgatct gtatataatg
     3481 catcgaactt agaggtgtga ccttaaattt aactttttta aaaaaaccag gaggtcaata
     3541 aaatttaaac tgcttaacaa ctgtgtatac aaatgcttga ggattttttt acttgcatat
     3601 tttttaccat aaatatagct ggattctctt aaa
//
LOCUS       XM_032648579            3742 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin specific peptidase 1 (USP1),
            transcript variant X2, mRNA.
ACCESSION   XM_032648579
VERSION     XM_032648579.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3742
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3742
                     /gene="USP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 15 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 5 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116761989"
     CDS             561..2906
                     /gene="USP1"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 1 isoform
                     X1"
                     /protein_id="XP_032504470.1"
                     /db_xref="GeneID:116761989"
                     /translation="MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQE
                     NEEKTSEYRGSEIDQVVPAAQSSPVNCEKRENLLPFVGLNNLGNTCYLNSILQVLYFC
                     PGFKSGVKHLFNIISRKKEALKDEASPKDKGSCKEDSSASYELICSLQSLIISVEQLQ
                     ASFLLNPEKYTDELATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLL
                     KKEVKNVAELSTKVEEKHEKEEMSGNNSMEMDSMRHCEDYKEKLPKVNGKRKSDTEFG
                     NMKKKVKVSKEHQSLEENQRQTRSKRKATVDSLDIPAKIIPKYISENESARPSQKKSR
                     VKINWLKSAAKQPSIISKFCSLGKITTNQESKGQSKENEYDLEEDLGKYENDNTANGC
                     GLESPGNNVMPANEVKPINKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
                     DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHY
                     TEAERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLKLSLEEWSTK
                     PTNDSYGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKENFVIDQMCEIGKPEPLN
                     EEEARGVVENYDDEEVSIRVSGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNKASN
                     PDKVASTAFAENRNSETNNTNGTHESDRNKESNDQTGINMSGFENKISYVVQSLKEYE
                     GKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLLFYKKL"
     misc_feature    732..2345
                     /gene="USP1"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; Region:
                     Peptidase_C19O; cd02671"
                     /db_xref="CDD:239136"
ORIGIN      
        1 acaagggtcc tgagactgag gaaaacgcgc caagttcccg tcggcggtgg agtgaggaag
       61 accccagcgg ttcgggtgcc gggcgagcgg agccgcttct ggccctcctt gccgtcccgg
      121 gacggggacg ggggcgggcg cggttgggcg ccgcttcggg gatgtagtcg gtgccggcgc
      181 caggcaggac cgagcggcag cccgggttcc cgctcttgag agcgaatggt cactcccctg
      241 cggggagggc gatccggcca gcttttccgt gggtcgcggg cccccgcagg ctcggggcaa
      301 gggctcacct gtcgtacccg ccctcagccc ggttagactc gtcggcgtca ccgccgcgga
      361 cctcgctctg ggccatgacc agagttacgg gagaaacatt tttgatgtaa caacccccaa
      421 tgataaggac agccaggagc aagaaatggt atagcagaag atacggcacc tggtaaaatg
      481 ttatattcta gatatgattg gtgattacaa ggtccctgta taaattaatt cttgtcaact
      541 ccttgggatt tgaagagaaa atgcccggtg tcatacctag tgaaagtaat gggctttcaa
      601 gaggtagtcc atcaaaaaaa aacagacttt ccttgaagtt ttttcagaaa aaggaaacca
      661 agagagcctt ggatttcaca gattctcaag aaaacgaaga aaaaacttct gaatatagag
      721 gatctgaaat tgatcaagtt gttcctgcag cacagtcctc acctgtcaac tgtgagaaga
      781 gagaaaactt gttaccgttt gtgggactga ataatctcgg caatacttgt tatcttaata
      841 gtatacttca ggtattatat ttttgtcctg gttttaaatc tggagtgaag cacttattta
      901 atattatttc aaggaagaaa gaagccctaa aagatgaagc cagtccaaaa gataagggaa
      961 gttgcaaaga agattcttca gcaagttatg aactaatatg cagcttacag tccttgatca
     1021 tttcagtcga acagcttcag gctagttttc tcttaaatcc agagaaatat actgatgaac
     1081 ttgctactca gccaaggcga ctacttaaca cactcaggga actcaaccct atgtatgaag
     1141 gatatctaca gcatgatgca caggaagtat tacagtgtat tttgggaaac attcaagaaa
     1201 catgccaact cctaaaaaaa gaagtaaaaa atgtggcaga gttatctact aaggtagaag
     1261 aaaaacatga gaaagaggaa atgagtggta ataacagcat ggagatggac agtatgaggc
     1321 attgtgaaga ctataaagaa aaattgccaa aagtaaatgg gaaaagaaaa agtgacactg
     1381 aatttggtaa catgaagaaa aaagttaaag tctctaagga acaccagtct ttggaagaaa
     1441 accagagaca aaccagatca aaaagaaaag ctacagttga ttcattagat attcctgcta
     1501 aaataatccc caagtacatt tctgaaaatg agagtgcaag accctcacaa aagaaatcaa
     1561 gagttaaaat aaactggtta aagtctgcag ctaagcaacc cagcattatt tctaaattct
     1621 gtagtctggg taaaataaca acaaaccaag aatccaaagg acaatctaaa gaaaatgaat
     1681 atgatcttga agaggacttg gggaagtatg agaatgataa tacagctaat ggttgtggac
     1741 ttgaatctcc agggaataat gttatgcctg ctaatgaagt taagcccata aacaaaggtg
     1801 cagagcaaat tggttttgag ctagtggaga aattatttca aggtcagctg gtattaagga
     1861 ctcgttgctt agaatgtgaa agtttaacag aaagaagaga agattttcaa gacatcagtg
     1921 taccagtgca agaagatgag ctttccaaag tagaggagag ttctgaaatt tctccagagc
     1981 caaaaacaga aatgaagacc ctgagatggg caatttcaca gtttgcttca gtggagagga
     2041 ttgtaggaga agataaatat ttctgtgaaa attgccatca ttatactgaa gctgaacgaa
     2101 gtcttttgtt tgacaaaatg cctgaagtta taactattca tttgaagtgc tttgctgcta
     2161 gtggcttgga gtttgattgt tatggtggtg gactttccaa gatcaacact cctttactga
     2221 cacctcttaa actgtcacta gaagaatgga gcacaaagcc aaccaacgac agctatggat
     2281 tatttgcagt tgtgatgcat agtggcatta caattagtag tgggcattat actgcttctg
     2341 ttaaagtcac tgaccttaac agtttagaac tagataagga aaattttgtg atcgaccaaa
     2401 tgtgtgaaat aggtaagcca gaaccattga atgaggagga agcaaggggt gtggtcgaaa
     2461 actatgacga tgaagaagtg tcgattagag tcagtggaaa tacccagcca agtaaagttt
     2521 tgaacaaaaa aaatgtagaa gctattggac ttcttggagg acaaaagagt aaagcagatt
     2581 atgagttata caacaaagca tctaatcctg ataaagttgc cagtacagca tttgctgaaa
     2641 atagaaattc tgagactaac aatactaatg ggacccatga atctgataga aacaaggaat
     2701 ccaatgacca aacaggcatt aacatgagtg gttttgaaaa caaaatttca tatgtagtgc
     2761 aaagcttaaa ggagtatgag gggaagtggt tgctttttga tgattctgaa gtgaaagtta
     2821 ctgaagagaa ggacttttta aattctcttt ccccttctac atctcctaca tctactcctt
     2881 acttgctatt ttataagaaa ttatagagtg agtgtatttt ccttgtgtat atattaaaca
     2941 gacctggaca aacatcggta aattgattac atcaaaaagt ctttagctta tcttttgaag
     3001 ctattgggta ttattggttt ctctgggttt ttatataaat agtaaaattt gagttattga
     3061 aatccatgtt aatttttaga attcattttc cttagtggag actagtgatt gatgcattag
     3121 cttctgggaa caaacttgta taggttctta actgaattat tcaaaatgga agcatttaaa
     3181 cactttaaat ttacacctat cttttgtgtt tgctttttca aataaagtgc ttgtatttgt
     3241 atctccatat tttggagtac ttatcatcta catgatgttt ataggttctg tggtttttca
     3301 gctaagaagc agaatctcat ttcagtacat ttagttttgt aagtcataaa gccagatctt
     3361 ggatgggctg tattagaggc acgtgtatgt attcacaata gtgcacattt tgtgccttca
     3421 atcactttga aaagcgtctc agaaaacctg gagtcagtcc tcttctatct atcttcacaa
     3481 gaattttata tgtatttatg aaaatgattc tgtaccctag taaatctttt tcagtgtgga
     3541 ctaatttgta tctcttcata gtcatactct gcacgatctg tatataatgc atcgaactta
     3601 gaggtgtgac cttaaattta acttttttaa aaaaaccagg aggtcaataa aatttaaact
     3661 gcttaacaac tgtgtataca aatgcttgag gattttttta cttgcatatt ttttaccata
     3721 aatatagctg gattctctta aa
//
LOCUS       XM_032648586            3806 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin specific peptidase 1 (USP1),
            transcript variant X3, mRNA.
ACCESSION   XM_032648586
VERSION     XM_032648586.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3806
                     /gene="USP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761989"
     CDS             616..2316
                     /gene="USP1"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 1 isoform
                     X2"
                     /protein_id="XP_032504477.1"
                     /db_xref="GeneID:116761989"
                     /translation="MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQE
                     NEEKTSEYRGSEIDQVVPAAQSSPVNCEKRENLLPFVGLNNLGNTCYLNSILQVLYFC
                     PGFKSGVKHLFNIISRKKEALKDEASPKDKGSCKEDSSASYELICSLQSLIISVEQLQ
                     ASFLLNPEKYTDELATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLL
                     KKEVKNVAELSTKVEEKHEKEEMSGNNSMEMDSMRHCEDYKEKLPKVNGKRKSDTEFG
                     NMKKKVKVSKEHQSLEENQRQTRSKRKATVDSLDIPAKIIPKYISENESARPSQKKSR
                     VKINWLKSAAKQPSIISKFCSLGKITTNQESKGQSKENEYDLEEDLGKYENDNTANGC
                     GLESPGNNVMPANEVKPINKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
                     DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHY
                     TEAERSLLFDKMPEVITIHLKCFAASGLEKIKKIKGGSAIYPSQKHLNISTYFSILCV
                     "
     misc_feature    787..>2226
                     /gene="USP1"
                     /note="Peptidase C19 contains ubiquitinyl hydrolases. They
                     are intracellular peptidases that remove ubiquitin
                     molecules from polyubiquinated peptides by cleavage of
                     isopeptide bonds. They hydrolyse bonds involving the
                     carboxyl group of the C-terminal Gly...; Region:
                     Peptidase_C19; cl02553"
                     /db_xref="CDD:470612"
     misc_feature    <1876..>2301
                     /gene="USP1"
                     /note="Peptidase C19 contains ubiquitinyl hydrolases. They
                     are intracellular peptidases that remove ubiquitin
                     molecules from polyubiquinated peptides by cleavage of
                     isopeptide bonds. They hydrolyse bonds involving the
                     carboxyl group of the C-terminal Gly...; Region:
                     Peptidase_C19; cl02553"
                     /db_xref="CDD:470612"
ORIGIN      
        1 aactaccgtt ccggctggtt ccggaggccg tgcgtgccag gagggctagt ggcggtcgtg
       61 aggtggctct agcctttcgc gtctctgcag cctggagact agaaccggca ctttcgtagg
      121 acgccacctc caatcgcagc gctggcgcgg gcggaggcta aaacacaagg gtcctgagac
      181 tgaggaaaac gcgccaagtt cccgtcggcg gtggagtgag gaagacccca gcggttcggg
      241 tgccgggcga gcggagccgc ttctggccct ccttgccgtc ccgggacggg gacgggggcg
      301 ggcgcggttg ggcgccgctt cggggatgta gtcggtgccg gcgccaggca ggaccgagcg
      361 gcagcccggg ttcccgctct tgagagcgaa tggtcactcc cctgcgggga gggcgatccg
      421 gccagctttt ccgtgggtcg cgggcccccg caggctcggg gcaagggctc acctgtcgta
      481 cccgccctca gcccggttag actcgtcggc gtcaccgccg cggacctcgc tctgggccat
      541 gaccagatat gattggtgat tacaaggtcc ctgtataaat taattcttgt caactccttg
      601 ggatttgaag agaaaatgcc cggtgtcata cctagtgaaa gtaatgggct ttcaagaggt
      661 agtccatcaa aaaaaaacag actttccttg aagttttttc agaaaaagga aaccaagaga
      721 gccttggatt tcacagattc tcaagaaaac gaagaaaaaa cttctgaata tagaggatct
      781 gaaattgatc aagttgttcc tgcagcacag tcctcacctg tcaactgtga gaagagagaa
      841 aacttgttac cgtttgtggg actgaataat ctcggcaata cttgttatct taatagtata
      901 cttcaggtat tatatttttg tcctggtttt aaatctggag tgaagcactt atttaatatt
      961 atttcaagga agaaagaagc cctaaaagat gaagccagtc caaaagataa gggaagttgc
     1021 aaagaagatt cttcagcaag ttatgaacta atatgcagct tacagtcctt gatcatttca
     1081 gtcgaacagc ttcaggctag ttttctctta aatccagaga aatatactga tgaacttgct
     1141 actcagccaa ggcgactact taacacactc agggaactca accctatgta tgaaggatat
     1201 ctacagcatg atgcacagga agtattacag tgtattttgg gaaacattca agaaacatgc
     1261 caactcctaa aaaaagaagt aaaaaatgtg gcagagttat ctactaaggt agaagaaaaa
     1321 catgagaaag aggaaatgag tggtaataac agcatggaga tggacagtat gaggcattgt
     1381 gaagactata aagaaaaatt gccaaaagta aatgggaaaa gaaaaagtga cactgaattt
     1441 ggtaacatga agaaaaaagt taaagtctct aaggaacacc agtctttgga agaaaaccag
     1501 agacaaacca gatcaaaaag aaaagctaca gttgattcat tagatattcc tgctaaaata
     1561 atccccaagt acatttctga aaatgagagt gcaagaccct cacaaaagaa atcaagagtt
     1621 aaaataaact ggttaaagtc tgcagctaag caacccagca ttatttctaa attctgtagt
     1681 ctgggtaaaa taacaacaaa ccaagaatcc aaaggacaat ctaaagaaaa tgaatatgat
     1741 cttgaagagg acttggggaa gtatgagaat gataatacag ctaatggttg tggacttgaa
     1801 tctccaggga ataatgttat gcctgctaat gaagttaagc ccataaacaa aggtgcagag
     1861 caaattggtt ttgagctagt ggagaaatta tttcaaggtc agctggtatt aaggactcgt
     1921 tgcttagaat gtgaaagttt aacagaaaga agagaagatt ttcaagacat cagtgtacca
     1981 gtgcaagaag atgagctttc caaagtagag gagagttctg aaatttctcc agagccaaaa
     2041 acagaaatga agaccctgag atgggcaatt tcacagtttg cttcagtgga gaggattgta
     2101 ggagaagata aatatttctg tgaaaattgc catcattata ctgaagctga acgaagtctt
     2161 ttgtttgaca aaatgcctga agttataact attcatttga agtgctttgc tgctagtggc
     2221 ttggagaaaa taaagaaaat taagggggga agtgccatat atccttcaca gaagcacctg
     2281 aatattagta cttatttcag tattctttgt gtttgattgt tatggtggtg gactttccaa
     2341 gatcaacact cctttactga cacctcttaa actgtcacta gaagaatgga gcacaaagcc
     2401 aaccaacgac agctatggat tatttgcagt tgtgatgcat agtggcatta caattagtag
     2461 tgggcattat actgcttctg ttaaagtcac tgaccttaac agtttagaac tagataagga
     2521 aaattttgtg atcgaccaaa tgtgtgaaat aggtaagcca gaaccattga atgaggagga
     2581 agcaaggggt gtggtcgaaa actatgacga tgaagaagtg tcgattagag tcagtggaaa
     2641 tacccagcca agtaaagttt tgaacaaaaa aaatgtagaa gctattggac ttcttggagg
     2701 acaaaagagt aaagcagatt atgagttata caacaaagca tctaatcctg ataaagttgc
     2761 cagtacagca tttgctgaaa atagaaattc tgagactaac aatactaatg ggacccatga
     2821 atctgataga aacaaggaat ccaatgacca aacaggcatt aacatgagtg gttttgaaaa
     2881 caaaatttca tatgtagtgc aaagcttaaa ggagtatgag gggaagtggt tgctttttga
     2941 tgattctgaa gtgaaagtta ctgaagagaa ggacttttta aattctcttt ccccttctac
     3001 atctcctaca tctactcctt acttgctatt ttataagaaa ttatagagtg agtgtatttt
     3061 ccttgtgtat atattaaaca gacctggaca aacatcggta aattgattac atcaaaaagt
     3121 ctttagctta tcttttgaag ctattgggta ttattggttt ctctgggttt ttatataaat
     3181 agtaaaattt gagttattga aatccatgtt aatttttaga attcattttc cttagtggag
     3241 actagtgatt gatgcattag cttctgggaa caaacttgta taggttctta actgaattat
     3301 tcaaaatgga agcatttaaa cactttaaat ttacacctat cttttgtgtt tgctttttca
     3361 aataaagtgc ttgtatttgt atctccatat tttggagtac ttatcatcta catgatgttt
     3421 ataggttctg tggtttttca gctaagaagc agaatctcat ttcagtacat ttagttttgt
     3481 aagtcataaa gccagatctt ggatgggctg tattagaggc acgtgtatgt attcacaata
     3541 gtgcacattt tgtgccttca atcactttga aaagcgtctc agaaaacctg gagtcagtcc
     3601 tcttctatct atcttcacaa gaattttata tgtatttatg aaaatgattc tgtaccctag
     3661 taaatctttt tcagtgtgga ctaatttgta tctcttcata gtcatactct gcacgatctg
     3721 tatataatgc atcgaactta gaggtgtgac cttaaattta acttttttaa aaaaaccagg
     3781 aggtcaataa aatttaaact gcttaa
//
LOCUS       XM_032648596            4345 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin specific peptidase 1 (USP1),
            transcript variant X4, mRNA.
ACCESSION   XM_032648596
VERSION     XM_032648596.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4345
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4345
                     /gene="USP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116761989"
     CDS             1155..2855
                     /gene="USP1"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 1 isoform
                     X2"
                     /protein_id="XP_032504487.1"
                     /db_xref="GeneID:116761989"
                     /translation="MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQE
                     NEEKTSEYRGSEIDQVVPAAQSSPVNCEKRENLLPFVGLNNLGNTCYLNSILQVLYFC
                     PGFKSGVKHLFNIISRKKEALKDEASPKDKGSCKEDSSASYELICSLQSLIISVEQLQ
                     ASFLLNPEKYTDELATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLL
                     KKEVKNVAELSTKVEEKHEKEEMSGNNSMEMDSMRHCEDYKEKLPKVNGKRKSDTEFG
                     NMKKKVKVSKEHQSLEENQRQTRSKRKATVDSLDIPAKIIPKYISENESARPSQKKSR
                     VKINWLKSAAKQPSIISKFCSLGKITTNQESKGQSKENEYDLEEDLGKYENDNTANGC
                     GLESPGNNVMPANEVKPINKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
                     DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHY
                     TEAERSLLFDKMPEVITIHLKCFAASGLEKIKKIKGGSAIYPSQKHLNISTYFSILCV
                     "
     misc_feature    1326..>2765
                     /gene="USP1"
                     /note="Peptidase C19 contains ubiquitinyl hydrolases. They
                     are intracellular peptidases that remove ubiquitin
                     molecules from polyubiquinated peptides by cleavage of
                     isopeptide bonds. They hydrolyse bonds involving the
                     carboxyl group of the C-terminal Gly...; Region:
                     Peptidase_C19; cl02553"
                     /db_xref="CDD:470612"
     misc_feature    <2415..>2840
                     /gene="USP1"
                     /note="Peptidase C19 contains ubiquitinyl hydrolases. They
                     are intracellular peptidases that remove ubiquitin
                     molecules from polyubiquinated peptides by cleavage of
                     isopeptide bonds. They hydrolyse bonds involving the
                     carboxyl group of the C-terminal Gly...; Region:
                     Peptidase_C19; cl02553"
                     /db_xref="CDD:470612"
ORIGIN      
        1 aggaaaacgc gccaagttcc cgtcggcggt ggagtgagga agaccccagc ggttcgggtg
       61 ccgggcgagc ggagccgctt ctggccctcc ttgccgtccc gggacgggga cgggggcggg
      121 cgcggttggg cgccgcttcg gggatgtagt cggtgccggc gccaggcagg accgagcggc
      181 agcccgggtt cccgctcttg agagcgaatg gtcactcccc tgcggggagg gcgatccggc
      241 cagcttttcc gtgggtcgcg ggcccccgca ggctcggggc aagggctcac ctgtcgtacc
      301 cgccctcagc ccggttagac tcgtcggcgt caccgccgcg gacctcgctc tgggccatga
      361 ccaggtaagg agggcccgtg gaggaggggc cggtgcctgg gcgccgcggc aagttcggca
      421 ggagtccgag ggggccgcgg ggaggacccc ggctcccttg gtgctgcgcc cccgcccagc
      481 tgccagccaa gccgtccgcg cagcgggcgg cgccccctcc cgccgccgct ggggactcaa
      541 ggcaggtgcg ggctgggagt aaataggcca actccgcgag ctgtggttct gcttaaagac
      601 gccgcccgcc gggccggtgc cgcgtttgac gggcacgggc atcatcaccg tcccgttatc
      661 ttctcacttt cttttccgtt cgtagagttt gcgggataag gagaagaaat gtttgcgctc
      721 acgttgttct gtgtcagtga ttgctaaatt ttaccgagca gtttaactta ctttttctac
      781 aagtatttag aacggcacgt gtcttaaacc tttgtcgagg atgttattct tgttttacat
      841 ttttcgtgaa aagttgggat tgagtcgtcc catcttacag aggaagaaac ttgaaactaa
      901 tgagacttag tgttcacact gtcatttgtc aagaacattt aatgttctat tgttttttct
      961 gcgaaacttg atttagagtt acgggagaaa catttttgat gtaacaaccc ccaatgataa
     1021 ggacagccag gagcaagaaa tggtatagca gaagatacgg cacctggtaa aatgttatat
     1081 tctagatatg attggtgatt acaaggtccc tgtataaatt aattcttgtc aactccttgg
     1141 gatttgaaga gaaaatgccc ggtgtcatac ctagtgaaag taatgggctt tcaagaggta
     1201 gtccatcaaa aaaaaacaga ctttccttga agttttttca gaaaaaggaa accaagagag
     1261 ccttggattt cacagattct caagaaaacg aagaaaaaac ttctgaatat agaggatctg
     1321 aaattgatca agttgttcct gcagcacagt cctcacctgt caactgtgag aagagagaaa
     1381 acttgttacc gtttgtggga ctgaataatc tcggcaatac ttgttatctt aatagtatac
     1441 ttcaggtatt atatttttgt cctggtttta aatctggagt gaagcactta tttaatatta
     1501 tttcaaggaa gaaagaagcc ctaaaagatg aagccagtcc aaaagataag ggaagttgca
     1561 aagaagattc ttcagcaagt tatgaactaa tatgcagctt acagtccttg atcatttcag
     1621 tcgaacagct tcaggctagt tttctcttaa atccagagaa atatactgat gaacttgcta
     1681 ctcagccaag gcgactactt aacacactca gggaactcaa ccctatgtat gaaggatatc
     1741 tacagcatga tgcacaggaa gtattacagt gtattttggg aaacattcaa gaaacatgcc
     1801 aactcctaaa aaaagaagta aaaaatgtgg cagagttatc tactaaggta gaagaaaaac
     1861 atgagaaaga ggaaatgagt ggtaataaca gcatggagat ggacagtatg aggcattgtg
     1921 aagactataa agaaaaattg ccaaaagtaa atgggaaaag aaaaagtgac actgaatttg
     1981 gtaacatgaa gaaaaaagtt aaagtctcta aggaacacca gtctttggaa gaaaaccaga
     2041 gacaaaccag atcaaaaaga aaagctacag ttgattcatt agatattcct gctaaaataa
     2101 tccccaagta catttctgaa aatgagagtg caagaccctc acaaaagaaa tcaagagtta
     2161 aaataaactg gttaaagtct gcagctaagc aacccagcat tatttctaaa ttctgtagtc
     2221 tgggtaaaat aacaacaaac caagaatcca aaggacaatc taaagaaaat gaatatgatc
     2281 ttgaagagga cttggggaag tatgagaatg ataatacagc taatggttgt ggacttgaat
     2341 ctccagggaa taatgttatg cctgctaatg aagttaagcc cataaacaaa ggtgcagagc
     2401 aaattggttt tgagctagtg gagaaattat ttcaaggtca gctggtatta aggactcgtt
     2461 gcttagaatg tgaaagttta acagaaagaa gagaagattt tcaagacatc agtgtaccag
     2521 tgcaagaaga tgagctttcc aaagtagagg agagttctga aatttctcca gagccaaaaa
     2581 cagaaatgaa gaccctgaga tgggcaattt cacagtttgc ttcagtggag aggattgtag
     2641 gagaagataa atatttctgt gaaaattgcc atcattatac tgaagctgaa cgaagtcttt
     2701 tgtttgacaa aatgcctgaa gttataacta ttcatttgaa gtgctttgct gctagtggct
     2761 tggagaaaat aaagaaaatt aaggggggaa gtgccatata tccttcacag aagcacctga
     2821 atattagtac ttatttcagt attctttgtg tttgattgtt atggtggtgg actttccaag
     2881 atcaacactc ctttactgac acctcttaaa ctgtcactag aagaatggag cacaaagcca
     2941 accaacgaca gctatggatt atttgcagtt gtgatgcata gtggcattac aattagtagt
     3001 gggcattata ctgcttctgt taaagtcact gaccttaaca gtttagaact agataaggaa
     3061 aattttgtga tcgaccaaat gtgtgaaata ggtaagccag aaccattgaa tgaggaggaa
     3121 gcaaggggtg tggtcgaaaa ctatgacgat gaagaagtgt cgattagagt cagtggaaat
     3181 acccagccaa gtaaagtttt gaacaaaaaa aatgtagaag ctattggact tcttggagga
     3241 caaaagagta aagcagatta tgagttatac aacaaagcat ctaatcctga taaagttgcc
     3301 agtacagcat ttgctgaaaa tagaaattct gagactaaca atactaatgg gacccatgaa
     3361 tctgatagaa acaaggaatc caatgaccaa acaggcatta acatgagtgg ttttgaaaac
     3421 aaaatttcat atgtagtgca aagcttaaag gagtatgagg ggaagtggtt gctttttgat
     3481 gattctgaag tgaaagttac tgaagagaag gactttttaa attctctttc cccttctaca
     3541 tctcctacat ctactcctta cttgctattt tataagaaat tatagagtga gtgtattttc
     3601 cttgtgtata tattaaacag acctggacaa acatcggtaa attgattaca tcaaaaagtc
     3661 tttagcttat cttttgaagc tattgggtat tattggtttc tctgggtttt tatataaata
     3721 gtaaaatttg agttattgaa atccatgtta atttttagaa ttcattttcc ttagtggaga
     3781 ctagtgattg atgcattagc ttctgggaac aaacttgtat aggttcttaa ctgaattatt
     3841 caaaatggaa gcatttaaac actttaaatt tacacctatc ttttgtgttt gctttttcaa
     3901 ataaagtgct tgtatttgta tctccatatt ttggagtact tatcatctac atgatgttta
     3961 taggttctgt ggtttttcag ctaagaagca gaatctcatt tcagtacatt tagttttgta
     4021 agtcataaag ccagatcttg gatgggctgt attagaggca cgtgtatgta ttcacaatag
     4081 tgcacatttt gtgccttcaa tcactttgaa aagcgtctca gaaaacctgg agtcagtcct
     4141 cttctatcta tcttcacaag aattttatat gtatttatga aaatgattct gtaccctagt
     4201 aaatcttttt cagtgtggac taatttgtat ctcttcatag tcatactctg cacgatctgt
     4261 atataatgca tcgaacttag aggtgtgacc ttaaatttaa cttttttaaa aaaaccagga
     4321 ggtcaataaa atttaaactg cttaa
//
LOCUS       XM_032648608            4386 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus angiopoietin like 3 (ANGPTL3), mRNA.
ACCESSION   XM_032648608
VERSION     XM_032648608.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4386
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4386
                     /gene="ANGPTL3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 8
                     Proteins, and 63% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116762005"
     CDS             2017..3399
                     /gene="ANGPTL3"
                     /codon_start=1
                     /product="angiopoietin-related protein 3"
                     /protein_id="XP_032504499.1"
                     /db_xref="GeneID:116762005"
                     /translation="MYTIKLFLFIAPLVISSRIDQDYPSFDSVSPEPKSRFAMLDDVK
                     ILANGLLQLGHGLKDFVHKTKGQINDIFQKLNIFDQSFYDLSLQTNEIKEEEKELRRT
                     TSRLQVKNEEVKNMSLELNSKLESLLEEKILLQQKVRYLEDQLTNLIKNQPEIQEHPE
                     ITSLKTFVEQQDNSIKDLLQIVEEQYRQLNQQHSQIKEIENQLRRTGVQESTENSLSS
                     KPRAPRTTPSLHLNETKNVEHDDIPADCTIIYNRGEHTSGIYSIRPSNSQVFNVYCDV
                     TSGSSWTLIQHRIDGSQNFNETWENYKYGFGRLDGEFWLGLEKIYSLVKQSKYILRIE
                     LEDWKDNKHYIEYSFHLGDHETNYTLHLVEIAGNVPNALPEHKDLMFSTWDHKAKGHF
                     NCPESNSGGWWCHDVCGENNLNGKYNKPKAKTKPERRRGICWKSQNGRLYSIKSTKML
                     IRPTDSENSE"
     misc_feature    <2284..>2670
                     /gene="ANGPTL3"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
     misc_feature    2737..3375
                     /gene="ANGPTL3"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; Region: FReD; cd00087"
                     /db_xref="CDD:238040"
     misc_feature    3091..3093
                     /gene="ANGPTL3"
                     /note="gamma-gamma dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238040"
     misc_feature    order(3175..3177,3181..3183,3187..3189)
                     /gene="ANGPTL3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238040"
     misc_feature    order(3196..3198,3205..3210,3238..3243)
                     /gene="ANGPTL3"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
ORIGIN      
        1 caccaagaac tttattgaac aatgtattca ctcttttgtt ccactacctt ctgccatttt
       61 taggtaactt cataattcca tcttcccaac tttttacctt tttgagtgaa gaactgttcc
      121 aggtgccctt tacactcttc caggggattg aaattttttc cattaagaga attctgtaaa
      181 gaccgaaata aatggaaatc cgaaggtgca atgtctggtg aacacggtgg atgaatcaga
      241 accccccagc caagcttaac agtttttgcc tggtcatcaa agaaacatac agtcttgcat
      301 tatcctgatg gaagattatg cgttttctgt tgactaattc tggatgcttt ttgttgagtg
      361 ctgctttcag ttggtctaac tgggagcagt acttgctgga gttaatcgtt tggttttctg
      421 gaaggagctc ataatagagg attcccttcc aatcccacca tacacacaac atcaccttct
      481 ttggatgaag accagccttt gctgtggttg gtagtggttt atttcgcttg tcccatgatc
      541 tcttccgttc cacattattg tacagtatcc acttttcatt gcccatcaca attcgtttta
      601 aatacggaac atttccatta cgtttcagta gagaagcaca tgcagaaata cagtcaagaa
      661 ggttgttttt tcacttaact tatgtggaac ccaaacatca aagcaatgaa cataacaaaa
      721 ccggtgcaaa tgattttcaa cgcttgattt ggatgttttg cctatgttgg ctgtctcccg
      781 tgtggtataa ggttgattgt tctcagttaa tgtctcgatt tgatcgctac caacttcaac
      841 tggtctaccc gacagtgcag catcgtccag tgagaaatct ccagcacaaa acttcgcaaa
      901 ctacttttga catgttcaat cagtcacagc accttctcca tacactgcac aagtcttttt
      961 atgcatttca gctgcatttt tacctttctt gaaataatga agcataatat gccaaaatgt
     1021 tgctttttct tccatcttca atattaaaat ggctacacaa aaattcacca attttgtaag
     1081 tcttttttta aatgcacact gatatgacag ctatcacata caatctaaca aaattgtttt
     1141 gaatgaagtt aaagacaact aagcactact agagccatct tatggaaaaa aatgaacaaa
     1201 cctttctttt ggtcaaccca atatttaatt ctggttgacc ttagaaaacc acataatcta
     1261 ttggtcttac agtgggcaca cggaaaagag gaggctagaa catagagaca tagactataa
     1321 cagagaaaaa ggatgaaatg tattttaatg tatgggattt tgtgataata tacaaatatg
     1381 atttagatag attatctgaa gcaaaaagat atactaacaa ataattacaa tgacaaataa
     1441 taaggaatat ataatcatat gttagcttat acagagtacc atgggaatgc agcattaaca
     1501 ccacctgcag atgtggagga gggcttcaca gagaaggcat tcttttttaa tcaatcactg
     1561 tttccaaaaa aaactaaaat acaatttggg aaatgtatac ttaattcatt aatttttcct
     1621 caactttaat gatgaattta tcagtcaaaa gaatttggta tttacctgta aatctcttta
     1681 aaaatcgtga taaattaaaa tgagctttta aaaacaggta gatctcataa cactgaaagt
     1741 gcagtttata atacagcaaa attaaataca ataaccattt taaatgacct attaaattct
     1801 ttgttcattt ctttgacttc atttagcatt gatctaactc aatgtggaag gttacattca
     1861 tacaagttta aacagcttaa tgattaacta tattcacctg ccaaccttac tgtttatgtg
     1921 gcaaatagtg ttatatagag agttcagaag tctaggtatg cttgcaggaa aaaaaacgaa
     1981 ttccaaatcg ttttaaaggg aataattagg ataaaaatgt acactattaa gctctttctt
     2041 tttattgctc ctctagttat ttcttccaga attgaccaag attatccatc atttgattct
     2101 gtatctccag agccaaaatc aagatttgct atgttagatg atgtaaaaat tttagccaat
     2161 ggcctacttc agttaggaca tggtcttaaa gactttgttc ataagactaa gggccaaatt
     2221 aatgacatat ttcaaaaact caacatattt gatcagtctt tttatgactt atcactgcaa
     2281 accaatgaaa tcaaagaaga agaaaaggaa cttagaagaa ctacatccag actgcaagtc
     2341 aaaaatgaag aagtaaagaa catgtcactt gaactcaact caaaacttga aagtctcctt
     2401 gaagaaaaaa ttctacttca acaaaaagtg agatacctgg aggaccaatt aaccaattta
     2461 attaaaaatc aacctgaaat tcaggaacac ccggaaataa cttcactcaa aacatttgta
     2521 gaacagcaag ataatagcat caaagatctt cttcagatcg tggaagaaca atacagacaa
     2581 ttaaatcaac agcacagtca aataaaagaa attgaaaatc agttaagaag aactggtgtt
     2641 caagaatcca cagaaaattc tctttcttct aaaccaagag caccaagaac tactccctct
     2701 cttcacttga atgaaacaaa aaatgtagaa catgatgaca ttcctgctga ttgtaccatc
     2761 atttataata gaggtgaaca tacaagtggc atctattcca ttagacccag caactctcaa
     2821 gttttcaacg tctactgtga tgttacctca ggtagttcat ggacattaat tcaacaccga
     2881 atagatggat cacaaaactt caatgaaact tgggaaaact acaaatatgg ttttgggagg
     2941 cttgatggag agttttggtt gggtctagag aagatatact ccctagtaaa gcaatctaaa
     3001 tatatcttac gaattgagct agaagattgg aaagacaaca agcattatat tgaatattct
     3061 tttcacctgg gagatcatga aaccaactat acactacatc tagttgagat tgctggcaat
     3121 gtccccaacg cactcccgga acacaaagat ttgatgtttt ctacttggga tcacaaagca
     3181 aaaggacact tcaattgtcc agaaagtaat tcaggaggtt ggtggtgcca tgatgtatgt
     3241 ggggaaaaca acctaaatgg taaatataac aagccaaaag caaagactaa gccagagagg
     3301 agaagaggaa tatgctggaa gtctcaaaat ggaaggttat actctatcaa atcaaccaaa
     3361 atgttgatcc gcccaacaga ttcagaaaat tctgaatgaa ctgaggcaat ttaaaaagcc
     3421 aataaattaa acattaaact catccgaaat tactgtggtt taaaaatctg gtattaaatc
     3481 cctaatagaa ggctttagaa ataaattctt tatattaaag ccactaccaa cttaatagta
     3541 aacatatcat cacatcacct caaagaacac catttacctt tctcaatcaa aattcttatg
     3601 atcatttatt catatatttt gtgatgtgcg aatcaatttt agatggtcac aatctgaatt
     3661 gtaaccaatg ggtgaatttt caaataacct ttctaaataa aaaacttaca aagagacttt
     3721 tattttcaaa gtcatcatgt gagctaattt tacaacttcc tcagtttaaa aactactttt
     3781 cttgctaaaa ttctaaactt gaataactat aaaggactaa taactgtaca tttcttaaat
     3841 gctgtaatat taatttcaaa actaaaattc agtcagttca gagtacatgt gaaaattgat
     3901 aatatgaatc ttaaaactga tacttcattt tgctacaaaa taatttggag taaatgtttg
     3961 gtatgctttg tttatgaagc caaatgaagc aggatgaaat actgtactga aatagattca
     4021 cagtcttata tacagtagat cataactgct aagtcatatt gactttaaat atcaagtact
     4081 gctgtagctt aacttgtttg ttaacttatc tgtactgtat acatatttta acacttaata
     4141 ttgtgaaaac aaataatttt aaagggatct tgtcagaata caataagaat gaatgtattg
     4201 gtggcatcaa gttaaagttt tatcatttat tccccctgaa cacagtgtga gtctaatact
     4261 tatgtgtagg ttttcaaaca attaagaatc ataacaagta actaaatgtt taaatagtct
     4321 gagagatgtt catgtatgtt tccaaattca ataaagactc agtcccctaa attatagaaa
     4381 ttttaa
//
LOCUS       XR_004352200            1675 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116762014
            (LOC116762014), ncRNA.
ACCESSION   XR_004352200
VERSION     XR_004352200.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1675
                     /gene="LOC116762014"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116762014"
     ncRNA           1..1675
                     /ncRNA_class="lncRNA"
                     /gene="LOC116762014"
                     /product="uncharacterized LOC116762014"
                     /db_xref="GeneID:116762014"
ORIGIN      
        1 ccaaacttcc cagcgcaact ttttcctctc ctcccctgcc cgcgcctcct cctccccctt
       61 ccccttcccc tctccagctc cccgccgggc cgcagcttca gcgcgcggcc gccagagggc
      121 gaccgggccg aggcccgaag ggccaacttc aatccggctg cgctttggat gcggactggc
      181 ccggcagcga caaaggtggg gagatggacc agacaggtcc tggaggagtg aacagcgaga
      241 gaggagaaag gcaggcgtgg acaagcgctc ccagactggc tgcaaggcag cactcaaaag
      301 aaacccaggg aagctggatc ctggtgaggg gtcctggaag ggcaaggatt catatcccag
      361 ttccttagac cataagaatt gaaagagccc ttaaaaccag cttacttctg ttctggagag
      421 gcaaatgaaa cttacagaag accaagaggc aagatccaag cttctggacc atttccagcc
      481 aatggggaaa ctgagtcatg gacaccaccg cttacttgtg ttgcgaagag ttcactgact
      541 cttcctatac tgatgataga gactgaagga tgaacgaggt cagaaataat gactgtgggt
      601 agtttcatct ggttccacct gctgggtgtc cgcgccacct cgactctttg ctatgcacac
      661 ttctggtgac agatgcagat caggccagag ggcccagatg gtgcaagaga acagcgcggc
      721 tccgtgcttc caacacacag cgctctgaga actgcagctg tgaccaaaga gaagtccttt
      781 aaagagcctc cactcctcaa ggctccaaaa ctccctacag agccaccact ccccatgatg
      841 gggacgaggt gaaaagcttg ggaggtggga ggagaattta actccactga gtgggagtgt
      901 aatggtcttc acggggaact agaacataaa ggagacagtg ggtaagaaag gacctgatca
      961 aattaaaaac taatccgtgt gatcaaagtg atggtgcacg tgactatgtg tatgattttt
     1021 aaaatgttgc aggccttgtt tcctaaagtt ataaatgttt catcgactaa atttcacaag
     1081 tgccagctat gacttcctcc tccgtggtcc ttttctatgg ctgtgtgacc agtgtccagt
     1141 taacctgtct gtgcctctct tgcttcatct agcttcctgt cctcactatt ttttctgagt
     1201 cagtgtgtgc aataatcctt tagaatctcc accggtgtgg ttaccgatat tgttaatgag
     1261 atgcaggaac aaacaggttt ttccactcgt gggtacatga cacccaagag aactgaaagc
     1321 atctgtccac acaaaaactt gtacacaaat gtggatagca gcactattca aaatagctaa
     1381 aggggagagc caacccaaat gtccagcaac tgatgaatgc atatataaaa tgtggtatat
     1441 tcatgtgatg gaatactatt tggccatgaa aaataatgaa gtgccgacac atgccacaat
     1501 atggctcaat cttgaaaaga ttatgctaaa taaaagaagc cagttacaaa aggacatata
     1561 taatatgatt ccatttatat aaaatgtcaa gaataggcaa acgtatagag gcagacaggc
     1621 gatcagtggt tgcttagggc caggaggaat ggagagattg ggggaccatg gctaa
//
LOCUS       XM_032648645            1588 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET and MYND domain containing 3 (SMYD3),
            transcript variant X1, mRNA.
ACCESSION   XM_032648645
VERSION     XM_032648645.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1588
                     /gene="SMYD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 2 long SRA reads, 15
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762019"
     CDS             72..1358
                     /gene="SMYD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase SMYD3 isoform
                     X1"
                     /protein_id="XP_032504536.1"
                     /db_xref="GeneID:116762019"
                     /translation="MEASKVEKFSTADRGNGLRALAPLRPGELLFRSDPLAYTVCKGS
                     RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWQDHKRECKCLKSCKPRYPPDSV
                     RLLGRVVFKLMEEIPSESEKLYSFYDLESNINKLTEDKKEGLRQLVLTFQHFMREEIQ
                     DASQLPPSFDIFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNG
                     PHLLLRAVRDIEAGEELTICYLDMLMTSEERRKQLRDQYCFDCDCLRCQTQDKDADML
                     TGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQTILSSNAERLPDINIYQLKVLDCA
                     MDACINLGLLEEALFYGIRTMEPYRIFFPGNHPVRGVQVMKVGKLQLHQGMFPQAMKN
                     LRLAFDIMRVTHGREHSLIEDLILLLEECDANIRAP"
     misc_feature    81..875
                     /gene="SMYD3"
                     /note="SET domain (including post-SET domain) found in SET
                     and MYND domain-containing protein 3 (SMYD3) and similar
                     proteins; Region: SET_SMYD3; cd19203"
                     /db_xref="CDD:380980"
     misc_feature    order(111..119,441..443,459..461,465..467,609..623,
                     645..647,675..689,780..782,786..788,792..794,840..842,
                     846..848)
                     /gene="SMYD3"
                     /note="active site"
                     /db_xref="CDD:380980"
     misc_feature    order(111..119,441..443,459..461,465..467,609..614,
                     675..689,786..788,840..842,846..848)
                     /gene="SMYD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380980"
     misc_feature    216..332
                     /gene="SMYD3"
                     /note="MYND finger; Region: zf-MYND; pfam01753"
                     /db_xref="CDD:460312"
     misc_feature    order(372..374,603..605,609..623,645..647,675..677,
                     783..788,792..794,837..842)
                     /gene="SMYD3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380980"
     misc_feature    order(609..623,627..629,639..641,675..677,711..713,
                     780..794,840..842)
                     /gene="SMYD3"
                     /note="inhibitor binding site [chemical binding];
                     inhibition site"
                     /db_xref="CDD:380980"
     misc_feature    order(693..695,852..854,858..860,867..869)
                     /gene="SMYD3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:380980"
ORIGIN      
        1 ggctcccggc agccagcgag acgccagctg caaaacgcgg cggacgcctg aggtgcggga
       61 gctctgcgag gatggaggcg tcgaaggtgg aaaagttcag caccgccgac aggggaaacg
      121 ggctgcgtgc gttggcgccg ctgcgccccg gagagctgct tttccgctcg gatcctttgg
      181 cgtacacggt gtgcaagggg agtcgtggtg tcgtctgcga ccgctgcctc ctcgggaagg
      241 aaaagctgat gcgatgctct caatgccgag ttgccaaata ctgtagtgct aagtgtcaga
      301 aaaaagcttg gcaggaccac aagcgagaat gcaaatgcct taaaagctgc aaacccagat
      361 atcctcccga ctctgtccga cttcttggca gagttgtttt caaacttatg gaagaaatac
      421 cctctgaatc ggagaaactt tactcatttt atgatctgga gtcaaatatt aacaaactga
      481 ctgaagataa gaaagagggc ctcaggcaac ttgtattaac atttcaacac ttcatgagag
      541 aagaaataca ggatgcttct cagctgccac cttcctttga catttttgaa gcctttgcaa
      601 aagtgatctg caactctttc accatctgta atgcagagat gcaggaagtt ggtgttggcc
      661 tgtatcctag tatgtctttg ctcaatcaca gctgtgaccc caactgttca attgtgttca
      721 acggacccca cctcttgctg cgtgcagtcc gagacattga ggccggagag gagctcacca
      781 tctgctacct ggatatgctg atgaccagcg aggagcgccg gaagcagctg agggaccaat
      841 actgctttga ctgtgactgt ttgcgatgtc aaacccagga caaggatgct gatatgctaa
      901 ctggtgacga acaagtgtgg aaggaggttc aagaatccct gaaaaaaatc gaagaactga
      961 aggcacattg gaagtgggaa caggttctgg ccatgtgcca gacgatccta agcagtaacg
     1021 cagagcggct tcctgatatc aacatctacc agctgaaggt gctcgactgt gccatggacg
     1081 cctgcatcaa cctcgggctg ctggaggagg cattgttcta cggcattcgg accatggagc
     1141 cgtacaggat ttttttccca ggaaaccatc ccgtcagagg cgtgcaggta atgaaagttg
     1201 gcaaactgca gttacatcaa ggcatgtttc cccaagcgat gaagaatctg aggctggctt
     1261 ttgatattat gagagtgaca catggcaggg agcacagcct gattgaagat ttgattctgc
     1321 tcttagaaga atgtgatgcc aacatcagag caccctaagg gaaccccgcc cccccataga
     1381 gggagagaca gcttatacct ttattgaatg ccttattgag gtcacacact ctctattttg
     1441 tttgttgtgt gaacctcccc tattggaaat gctgttctgt atttactttg gtaaataaag
     1501 tcagacatat ggtttgcaca ccacatgaat ctttagttgt agagaagcac aattataata
     1561 aatataaaaa atttggttga aaatgcca
//
LOCUS       XM_032648656             962 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET and MYND domain containing 3 (SMYD3),
            transcript variant X2, mRNA.
ACCESSION   XM_032648656
VERSION     XM_032648656.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..962
                     /gene="SMYD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762019"
     CDS             83..802
                     /gene="SMYD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase SMYD3 isoform
                     X2"
                     /protein_id="XP_032504547.1"
                     /db_xref="GeneID:116762019"
                     /translation="MQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVRDIEAGE
                     ELTICYLDMLMTSEERRKQLRDQYCFDCDCLRCQTQDKDADMLTGDEQVWKEVQESLK
                     KIEELKAHWKWEQVLAMCQTILSSNAERLPDINIYQLKVLDCAMDACINLGLLEEALF
                     YGIRTMEPYRIFFPGNHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE
                     HSLIEDLILLLEECDANIRAP"
     misc_feature    <83..319
                     /gene="SMYD3"
                     /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
                     domain superfamily; Region: SET; cl40432"
                     /db_xref="CDD:394802"
     misc_feature    order(116..133,155..163,224..235)
                     /gene="SMYD3"
                     /note="active site"
                     /db_xref="CDD:380980"
ORIGIN      
        1 acgtgacatg gaatgtacct ctctagcaaa atttcatttc taagaagtga tctgcaactc
       61 tttcaccatc tgtaatgcag agatgcagga agttggtgtt ggcctgtatc ctagtatgtc
      121 tttgctcaat cacagctgtg accccaactg ttcaattgtg ttcaacggac cccacctctt
      181 gctgcgtgca gtccgagaca ttgaggccgg agaggagctc accatctgct acctggatat
      241 gctgatgacc agcgaggagc gccggaagca gctgagggac caatactgct ttgactgtga
      301 ctgtttgcga tgtcaaaccc aggacaagga tgctgatatg ctaactggtg acgaacaagt
      361 gtggaaggag gttcaagaat ccctgaaaaa aatcgaagaa ctgaaggcac attggaagtg
      421 ggaacaggtt ctggccatgt gccagacgat cctaagcagt aacgcagagc ggcttcctga
      481 tatcaacatc taccagctga aggtgctcga ctgtgccatg gacgcctgca tcaacctcgg
      541 gctgctggag gaggcattgt tctacggcat tcggaccatg gagccgtaca ggattttttt
      601 cccaggaaac catcccgtca gaggcgtgca ggtaatgaaa gttggcaaac tgcagttaca
      661 tcaaggcatg tttccccaag cgatgaagaa tctgaggctg gcttttgata ttatgagagt
      721 gacacatggc agggagcaca gcctgattga agatttgatt ctgctcttag aagaatgtga
      781 tgccaacatc agagcaccct aagggaaccc cgccccccca tagagggaga gacagcttat
      841 acctttattg aatgccttat tgaggtcaca cactctctat tttgtttgtt gtgtgaacct
      901 cccctattgg aaatgctgtt ctgtatttac tttggtaaat aaagtcagac atatggtttg
      961 ca
//
LOCUS       XM_032648670             510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 60S ribosomal protein L23a-like
            (LOC116762023), mRNA.
ACCESSION   XM_032648670
VERSION     XM_032648670.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..510
                     /gene="LOC116762023"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762023"
     CDS             1..471
                     /gene="LOC116762023"
                     /codon_start=1
                     /product="60S ribosomal protein L23a-like"
                     /protein_id="XP_032504561.1"
                     /db_xref="GeneID:116762023"
                     /translation="MAPKAKKEVPAPPKAEAKAKPLKAKKAALKGVHSHTKKKIQTSP
                     TFQWPKTPRLRRQPKYPRKGAPRRNKLDHYAIIKFPLTTESAMKKIEDSNTLVFIVDV
                     RANKHQIKQAVKKLYDTDVAKVNTLIRPDGEKKAYVRLAPDCDALDVANKIGII"
     misc_feature    106..468
                     /gene="LOC116762023"
                     /note="60S ribosomal protein L23a; Provisional; Region:
                     PTZ00191"
                     /db_xref="CDD:185507"
ORIGIN      
        1 atggcgccga aggcgaagaa ggaagtccct gcccctccca aagccgaagc caaagcaaag
       61 cctttgaagg ccaagaaagc agcgttgaaa ggcgtccaca gccacacaaa aaagaagatc
      121 cagacgtcac ccaccttcca gtggcccaaa acaccgcggc tcaggaggca gcccaaatat
      181 cctcggaagg gcgcccctag gagaaacaag cttgaccact atgccatcat caagttcccc
      241 ctcaccaccg agtcagccat gaagaaaata gaagacagca acacactggt gttcattgtg
      301 gatgtcaggg ccaacaagca ccaaattaaa caggccgtga agaagctcta tgacactgac
      361 gtggctaagg tcaacaccct aatcaggcct gatggagaga agaaggcata tgttcgactg
      421 gctcctgact gtgacgcttt ggatgttgcc aacaaaattg ggatcatcta aactgagtcc
      481 agctgactaa ttctaaatat aaaagttttc
//
LOCUS       XM_032648683            1975 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus flavin containing dimethylaniline
            monoxygenase 1 (FMO1), mRNA.
ACCESSION   XM_032648683
VERSION     XM_032648683.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-135               VOSU01000011.1     128128168-128128302
            136-324             VOSU01000011.1     128137729-128137917
            325-487             VOSU01000011.1     128140723-128140885
            488-522             VOSU01000011.1     128144140-128144174
            523-523             "N"                1-1
            524-552             VOSU01000011.1     128144175-128144203
            553-554             "NN"               1-2
            555-641             VOSU01000011.1     128144204-128144290
            642-836             VOSU01000011.1     128147274-128147468
            837-1192            VOSU01000011.1     128149177-128149532
            1193-1264           VOSU01000011.1     128150049-128150120
            1265-1975           VOSU01000011.1     128151698-128152408
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1975
                     /gene="FMO1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 Proteins, and 36% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762027"
     CDS             4..1608
                     /gene="FMO1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:721..723,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: dimethylaniline
                     monooxygenase [N-oxide-forming] 1"
                     /protein_id="XP_032504574.1"
                     /db_xref="GeneID:116762027"
                     /translation="MAKRVATVGAGVSGLASIKRCREEGLEPTCFERSDDLGGLWRFT
                     EHVEEGRASLYKSVVSNSCKEMSCYPDFPFPENYPNYVPNSVFLEYLKMYANQFNLLK
                     CIQFKTKVSSVTKRPDFSVTGQWEVVTLHEGKQESAIFDAVMVCTSFLTNPYLPLDSF
                     PGINTVKGQYFLSXYKHPDIFRDXRVLVIGMGNSGTDIAMEASHVAKKVSFLIVTEYP
                     WAWVISQVFDSGYPWDMVLVMXFQNMFRNSLPTPVVNWLIARRMNSWFNRENYGLIPE
                     DRTQLREPVLSNELPGHIITGKVLIKPSVKEVKENSVVFNNTPKEEPIDIIVFATGYT
                     FAFPFLHETMVKVEDGQASLYKYIFPAHLQKPTLAVIGLIKPLGSMITTGDMKARWAV
                     QVLKGVNKLPPSSVMIEEVNARKKKQAQWFGLCYCKALQSHYIPCIDELLTYIDAKPN
                     LFSLLLTDPRLALTIFFGPCTPYQFRLTGSGKWEGARNAIMTLWNQTFKVTKTRVVQE
                     SPSPFASLLKLFSFLALLLAIFLIFL"
     misc_feature    7..1548
                     /gene="FMO1"
                     /note="Flavin-binding monooxygenase-like; Region:
                     FMO-like; pfam00743"
                     /db_xref="CDD:395602"
ORIGIN      
        1 agcatggcca agcgagttgc aactgtagga gctggggtca gtggcctggc ctccatcaag
       61 cgctgtcggg aagaaggact agagcccacc tgcttcgaga ggagcgacga ccttgggggg
      121 ctgtggagat tcaccgaaca tgttgaagaa ggcagagcca gcctctacaa gtctgtggtt
      181 tccaacagct gcaaggagat gtcttgttac ccagactttc cattcccaga aaattatcca
      241 aactatgtgc caaattctgt attcctggaa tatctcaaaa tgtatgcaaa ccagttcaac
      301 cttctgaaat gcattcaatt caagactaaa gtctccagtg taacaaaacg cccagatttt
      361 tctgttaccg gccaatggga ggtagtcact ctgcatgaag ggaagcaaga gtcagccatc
      421 tttgacgctg tcatggtctg cactagtttt cttactaacc catatttgcc actggactcc
      481 tttccaggta taaatactgt taaaggccag tattttctta gcntgtataa acatccagat
      541 atatttagag acnngagagt tcttgtgatt ggaatgggga attctggcac agacattgct
      601 atggaggcca gccacgtggc aaagaaggta tcattcttga tagttactga atacccctgg
      661 gcgtgggtga tcagccaggt ctttgactca ggctacccat gggacatggt gctcgtgatg
      721 tgatttcaga acatgttcag aaattctctc ccaactccag ttgtgaattg gttgatagca
      781 agaaggatga acagctggtt caatcgtgaa aattatggct taataccaga agacaggaca
      841 caactaagag agcctgtgct aagtaatgag ctcccaggcc atatcatcac tgggaaagtg
      901 ctcatcaagc caagcgtaaa ggaggtgaag gaaaactctg ttgtatttaa caacacccca
      961 aaggaagagc ccattgatat cattgtcttt gccactggat acacctttgc tttccccttc
     1021 ctccatgaga ctatggtgaa agttgaagat ggccaagcat cactgtacaa gtacatcttc
     1081 cctgcacatc tgcaaaagcc aaccctggct gttattggcc tcatcaaacc cttgggttcc
     1141 atgataacca caggggatat gaaagctcga tgggctgttc aggtcctgaa aggtgttaat
     1201 aaattaccac catcgagcgt catgatagag gaagttaatg caagaaaaaa aaaacaagcc
     1261 cagtggtttg gcttgtgtta ctgcaaagct ttacaatccc attatatccc atgcatagat
     1321 gaactcctga cctatatcga tgcaaagccc aacctgttct ctctgctcct gacagatcca
     1381 cgcctggctt tgaccatctt cttcggccca tgcacaccat accagttccg tttgaccggc
     1441 tcagggaaat gggaaggagc cagaaatgct atcatgaccc tgtggaacca aacattcaag
     1501 gtcacaaaaa ctagagttgt acaagaatcc ccttctccct ttgcaagctt acttaaactc
     1561 ttcagctttc tagctttgct tttggccatt ttcctgattt tcctataaat aaaagattac
     1621 ctaaatggat tgtcaaatgc acagcacaga tggacagtgc tttggttccc ccattgcaac
     1681 agcattgcct tcacggctat aaaccatatc tgagtagtga aggccacccc ctgcccttcc
     1741 ctggctggct ggagggccac cgctggtatt cctgagtgtc tcccaactcc acctgcttct
     1801 aatgctagag gaagataacc aaggtttctg tgcatttgaa ggctgctgga aggttcaagt
     1861 ttcattttag aagacagagt tgtcccagac agcactctga gcatttagac ctcttttcta
     1921 ttttcataga tctcaactaa aactccctat ttcacaaaag atttggttgt actaa
//
LOCUS       XM_032648698            1311 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apolipoprotein A2 (APOA2), transcript
            variant X1, mRNA.
ACCESSION   XM_032648698
VERSION     XM_032648698.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1311
                     /gene="APOA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762032"
     CDS             79..390
                     /gene="APOA2"
                     /codon_start=1
                     /product="apolipoprotein A-II"
                     /protein_id="XP_032504589.1"
                     /db_xref="GeneID:116762032"
                     /translation="MKLLPVTVLLLTICSLEGALVRRQAELPNLQSLFSQYFQTATDY
                     GKDLLEKAKGSELPIQAKAYFEKAQKQLTPLVKKAGTDLINFLDGILDLKTQPVAKCI
                     A"
     misc_feature    79..366
                     /gene="APOA2"
                     /note="Apolipoprotein A-II (ApoA-II); Region: ApoA-II;
                     pfam04711"
                     /db_xref="CDD:461404"
ORIGIN      
        1 cctgcctcgc tagccaggcc aggcacagac ggcaaggaca gcaacgctga ctaggccaat
       61 ttcccttcca ttaacaccat gaagctgctt ccagtgactg tgttgctcct taccatctgt
      121 agccttgaag gggctttggt tcggagacag gcagagctgc cgaatctgca gagcctgttc
      181 tctcagtact tccagactgc gaccgactac ggcaaggacc tgctggagaa ggccaagggc
      241 tcagagcttc caatccaggc caaggcctac tttgagaagg cacaaaagca gctgacaccc
      301 ctcgtcaaga aggctggaac tgatctgatt aacttcttgg acggtatttt ggacctcaaa
      361 acacagcctg ttgccaagtg cattgcctag actgttgtct tccatcccca gctggcccct
      421 ggaacaccca ctggccaggc ctagagctcc tcttcctacc tactctttgt tttctacgat
      481 aaatattgaa ggaatcaagt tgtgagcctg gtatgttttg gggactggga aaagtagggg
      541 tagtggggga agaggaggag ggagaacaaa gagaaatctg cttctaacag gagaggggtt
      601 ttggtgtgaa ggggtggaga aagggttgaa gagaccagtg atggaaatga cagagtaggg
      661 gtgcctgtga ctcttctcca aaccccaggg atttttctac aggcctggga atggccctgc
      721 aggagaaact aaagagactt tgccgtggac atggtacctt gaaaggcatg aaagattcat
      781 gaactgaatc cctagactcc tgaaggtcat gggaaatgag agcacccttc agaatttcct
      841 ctatcatact atgaagagga gaaagcttcc ccaaaatgag tccaaaggtg tcacccaagg
      901 cccctccctt cccttctgag ccaggggaac tctgtgcttt cccccatcct gcaataaaaa
      961 actcctctcc ctgaaggtgc tctaatcctt ccatttgaaa cctctcacct agaccccctg
     1021 tctgggaaca ctcattccaa gcctgtcccc cactattacc tgggtgctat tcatggaact
     1081 ggcccaagtt ctggtagcca tcttagagcc tggagctagt agatgtggta gccagttaaa
     1141 ggcctaacag gtctccaact tgatggacat gagggacttg agaaattttg gtagctgtga
     1201 tacctggatt aaatcaaaat ggaatggagg tcaggctgga ctgatgcagg agacttacaa
     1261 tcccaaaatg ggaaaatggg cattttccaa taaaagttta cttccacttt a
//
LOCUS       XR_004352204            1133 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apolipoprotein A2 (APOA2), transcript
            variant X2, misc_RNA.
ACCESSION   XR_004352204
VERSION     XR_004352204.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1133
                     /gene="APOA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762032"
     misc_RNA        1..1133
                     /gene="APOA2"
                     /product="apolipoprotein A2, transcript variant X2"
                     /db_xref="GeneID:116762032"
ORIGIN      
        1 cctgcctcgc tagccaggcc aggcacagac ggcaaggaca gcaacgctga ctaggccaat
       61 ttcccttcca ttaacaccat gaagctgctt ccagtgactg tgttgctcct taccatctgt
      121 agccttgaag gggctttggt tcggagacag gcagagctgc cgaatctgca gagcctgttc
      181 tctcagtact tccagactgc gaccgactac ggcaaggacc tgctggagaa ggccaagggc
      241 tcagagcttc caatccaggc caaggcctac tttgagaagg cacaaaagca gctgacaccc
      301 ctcgtcaaga aggctggaac tgatctgatt aacttcttgg acggtatttt ggacctcaaa
      361 acacagcctg ttgccaagtg cattgcctag actgttgtct tccatcccca gctggcccct
      421 ggaacaccca ctggccaggc ctagagctcc tcttcctacc tactctttgt tttctacgat
      481 aaatattgaa ggaatcaagt tgtgagcctg ggatttttct acaggcctgg gaatggccct
      541 gcaggagaaa ctaaagagac tttgccgtgg acatggtacc ttgaaaggca tgaaagattc
      601 atgaactgaa tccctagact cctgaaggtc atgggaaatg agagcaccct tcagaatttc
      661 ctctatcata ctatgaagag gagaaagctt ccccaaaatg agtccaaagg tgtcacccaa
      721 ggcccctccc ttcccttctg agccagggga actctgtgct ttcccccatc ctgcaataaa
      781 aaactcctct ccctgaaggt gctctaatcc ttccatttga aacctctcac ctagaccccc
      841 tgtctgggaa cactcattcc aagcctgtcc cccactatta cctgggtgct attcatggaa
      901 ctggcccaag ttctggtagc catcttagag cctggagcta gtagatgtgg tagccagtta
      961 aaggcctaac aggtctccaa cttgatggac atgagggact tgagaaattt tggtagctgt
     1021 gatacctgga ttaaatcaaa atggaatgga ggtcaggctg gactgatgca ggagacttac
     1081 aatcccaaaa tgggaaaatg ggcattttcc aataaaagtt tacttccact tta
//
LOCUS       XM_032648714            1807 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LIM homeobox 8 (LHX8), transcript variant
            X1, mRNA.
ACCESSION   XM_032648714
VERSION     XM_032648714.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1807
                     /gene="LHX8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 16 Proteins, and 8%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762040"
     CDS             147..1280
                     /gene="LHX8"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx8 isoform X1"
                     /protein_id="XP_032504605.1"
                     /db_xref="GeneID:116762040"
                     /translation="MYWKSEQMFVCKLEEKDVPELAVPPEKCQGLMSEECGRTAALAA
                     GRTRKGAGEEGLVSPEGVGDEDSCSSSAPLSPSSSPRSMASGSVCPPGKCVCNSCGLE
                     IVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRC
                     GRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNL
                     KREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTL
                     QKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSAPVTAVPPSRLSPPMLEEMAYS
                     AYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT"
     misc_feature    429..596
                     /gene="LHX8"
                     /note="The first LIM domain of Lhx7 and Lhx8; Region:
                     LIM1_Lhx7_Lhx8; cd09381"
                     /db_xref="CDD:188767"
     misc_feature    order(432..434,441..443,495..497,504..506,513..515,
                     522..524,579..581,588..590)
                     /gene="LHX8"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188767"
     misc_feature    615..779
                     /gene="LHX8"
                     /note="The second LIM domain of Lhx7 and Lhx8; Region:
                     LIM2_Lhx7_Lhx8; cd09383"
                     /db_xref="CDD:188769"
     misc_feature    order(615..617,624..626,681..683,690..692,699..701,
                     708..710,765..767,774..776)
                     /gene="LHX8"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188769"
     misc_feature    885..1055
                     /gene="LHX8"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 tttggacgaa gacttgtagc attctttctc ttctcggtgt cagcttttat tagtgcgctg
       61 gggctgggga ggcgggccag atcggcagac acggacagcc tctgaccctc tggagttggt
      121 atgtgataag cagccctagc agtgccatgt attggaaaag cgagcagatg tttgtgtgta
      181 aactagaaga aaaggacgtg ccggagctgg cagttcctcc cgagaagtgc caggggctca
      241 tgtcggagga gtgcgggcgg actgcagccc tggcggccgg gaggactcgg aaaggcgccg
      301 gggaagaggg actggtgagc cccgagggag tgggggacga ggactcgtgc tcctcctcgg
      361 ccccactgtc cccgtcgtcc tcgccccggt ccatggcctc gggctccgtc tgcccccctg
      421 gcaagtgtgt gtgcaacagc tgcggcctgg agatcgtgga caagtacctt ctcaaggtga
      481 atgacctgtg ctggcatgtt cggtgtctct cctgtagtgt ctgcaggacc tccttaggaa
      541 ggcataccag ctgttatatt aaagacaaag acattttctg caaacttgat tatttcagaa
      601 ggtatggaac tcgctgctct cgctgtggga ggcacatcca ttctactgac tgggtccgga
      661 gggccaaggg gaatgtctat cacttggcgt gctttgcctg cttttcttgc aaaaggcaac
      721 tttccacagg agaggagttt gctttggtgg aagagaaagt cctctgcaga gtgcattatg
      781 actgcatgct ggataattta aaaagagaag tggaaaatgg taatgggatt agtgtcgaag
      841 gtgccctcct cacagagcaa gatgtcaatc atccaaaacc agcaaaaaga gctcgaacaa
      901 gctttacagc agatcagctc caggttatgc aagcacaatt tgctcaggac aacaacccag
      961 atgcacagac cctccagaaa ctggcagaaa ggacaggctt gagcagacgt gtgatacagg
     1021 tgtggtttca gaactgtaga gcacgccaca agaaacacgt cagtcctaat cactcctcct
     1081 ctgccccagt cacagcagtc ccgccctcca ggctgtctcc acccatgtta gaagaaatgg
     1141 cttattctgc ctatgtgccc caagatggga caatgttaac tgcgctgcat agttatatgg
     1201 atgctcattc accaacaacc cttggactcc agcccttgtt accccattca atgacacaac
     1261 tgccaataag tcatacctaa ttcctttttt cagggataga aatgattaag gatataaact
     1321 tgtcatttat tatgtataaa ataccattga aaatatatta atgttagttt tttatttaac
     1381 atccaaagca tttccaacat cactttgctg cccaggtatg tatctctagt tggcctgcaa
     1441 gacactttta ttgattcttc attttttggt aaaacttatg tttacaagaa gaaaacaaat
     1501 caaaactttt ttttgtattg tatggaaata gttcactcga gtgtgtatct gttaatttat
     1561 ttgtcatcaa aagagcactt tgcctaaaag aaaggactga caagtgtgca aaatgtttac
     1621 aatcctttgt gaaattgtag tgtatcatta gtttgtatct gtaagttatt gttataaata
     1681 ctacctgtat tttttgttat atacagcttt atactttgaa gcttgtatct gtgaatttgc
     1741 aactgaaatt tattttgcca atgttttctg aatgaactga ataaagcttc tgttatagca
     1801 tgccatg
//
LOCUS       XM_032648724            2240 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LIM homeobox 8 (LHX8), transcript variant
            X2, mRNA.
ACCESSION   XM_032648724
VERSION     XM_032648724.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2240
                     /gene="LHX8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 Proteins, and 6%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762040"
     CDS             559..1599
                     /gene="LHX8"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx8 isoform X2"
                     /protein_id="XP_032504615.1"
                     /db_xref="GeneID:116762040"
                     /translation="MSEECGRTAALAAGRTRKGAGEEGLVSPEGVGDEDSCSSSAPLS
                     PSSSPRSMASGSVCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRH
                     TSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ
                     LSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRA
                     RTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSP
                     NHSSSAPVTAVPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLL
                     PHSMTQLPISHT"
     misc_feature    748..915
                     /gene="LHX8"
                     /note="The first LIM domain of Lhx7 and Lhx8; Region:
                     LIM1_Lhx7_Lhx8; cd09381"
                     /db_xref="CDD:188767"
     misc_feature    order(751..753,760..762,814..816,823..825,832..834,
                     841..843,898..900,907..909)
                     /gene="LHX8"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188767"
     misc_feature    934..1098
                     /gene="LHX8"
                     /note="The second LIM domain of Lhx7 and Lhx8; Region:
                     LIM2_Lhx7_Lhx8; cd09383"
                     /db_xref="CDD:188769"
     misc_feature    order(934..936,943..945,1000..1002,1009..1011,1018..1020,
                     1027..1029,1084..1086,1093..1095)
                     /gene="LHX8"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188769"
     misc_feature    1204..1374
                     /gene="LHX8"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 cagacctcaa tgaagttggg aaacaatctt aagagcagtc catcagagtg cttacggtca
       61 cagcggcctc tttggacgaa gacttgtagc attctttctc ttctcggtgt cagcttttat
      121 tagtgcgctg gggctgggga ggcgggccag atcggcagac acggacagcc tctgaccctc
      181 tggagttggt atgtgataag cagccctagc agtgccatgt attggaaaag cgagcagatg
      241 tttgtgtgta aactagaaga aaaggacgtg ccggagctgg cagttcctcc cgagaaggtg
      301 agcgacccga cgcctggcca gaccagctga atcgcagttt cctgcgagct gtttgcgctc
      361 ctaaatgagg ttcagaaatt acctgtaacg gcctcatctt caaacctggc agtttttttt
      421 ttttcttacg tagtagcgtt agtcagtaat cattgcctcc cctccccaca agctcactta
      481 acctgaggcc atggagaccg taatttggga gacgaagcct caagcctaag gcgctctcgg
      541 gtacattgcc aggggctcat gtcggaggag tgcgggcgga ctgcagccct ggcggccggg
      601 aggactcgga aaggcgccgg ggaagaggga ctggtgagcc ccgagggagt gggggacgag
      661 gactcgtgct cctcctcggc cccactgtcc ccgtcgtcct cgccccggtc catggcctcg
      721 ggctccgtct gcccccctgg caagtgtgtg tgcaacagct gcggcctgga gatcgtggac
      781 aagtaccttc tcaaggtgaa tgacctgtgc tggcatgttc ggtgtctctc ctgtagtgtc
      841 tgcaggacct ccttaggaag gcataccagc tgttatatta aagacaaaga cattttctgc
      901 aaacttgatt atttcagaag gtatggaact cgctgctctc gctgtgggag gcacatccat
      961 tctactgact gggtccggag ggccaagggg aatgtctatc acttggcgtg ctttgcctgc
     1021 ttttcttgca aaaggcaact ttccacagga gaggagtttg ctttggtgga agagaaagtc
     1081 ctctgcagag tgcattatga ctgcatgctg gataatttaa aaagagaagt ggaaaatggt
     1141 aatgggatta gtgtcgaagg tgccctcctc acagagcaag atgtcaatca tccaaaacca
     1201 gcaaaaagag ctcgaacaag ctttacagca gatcagctcc aggttatgca agcacaattt
     1261 gctcaggaca acaacccaga tgcacagacc ctccagaaac tggcagaaag gacaggcttg
     1321 agcagacgtg tgatacaggt gtggtttcag aactgtagag cacgccacaa gaaacacgtc
     1381 agtcctaatc actcctcctc tgccccagtc acagcagtcc cgccctccag gctgtctcca
     1441 cccatgttag aagaaatggc ttattctgcc tatgtgcccc aagatgggac aatgttaact
     1501 gcgctgcata gttatatgga tgctcattca ccaacaaccc ttggactcca gcccttgtta
     1561 ccccattcaa tgacacaact gccaataagt catacctaat tccttttttc agggatagaa
     1621 atgattaagg atataaactt gtcatttatt atgtataaaa taccattgaa aatatattaa
     1681 tgttagtttt ttatttaaca tccaaagcat ttccaacatc actttgctgc ccaggtatgt
     1741 atctctagtt ggcctgcaag acacttttat tgattcttca ttttttggta aaacttatgt
     1801 ttacaagaag aaaacaaatc aaaacttttt tttgtattgt atggaaatag ttcactcgag
     1861 tgtgtatctg ttaatttatt tgtcatcaaa agagcacttt gcctaaaaga aaggactgac
     1921 aagtgtgcaa aatgtttaca atcctttgtg aaattgtagt gtatcattag tttgtatctg
     1981 taagttattg ttataaatac tacctgtatt ttttgttata tacagcttta tactttgaag
     2041 cttgtatctg tgaatttgca actgaaattt attttgccaa tgttttctga atgaactgaa
     2101 taaagcttct gttatagcat gccatgcaaa cacattattg tgtttgtggt tgatgaacta
     2161 tggctgtaaa taacactata gtttaataag cccatcattc taagtttatt aaacattttc
     2221 cattcttgtg aaagtttcaa
//
LOCUS       XM_032648736            8155 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus round spermatid basic protein 1 (RSBN1),
            transcript variant X1, mRNA.
ACCESSION   XM_032648736
VERSION     XM_032648736.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8155
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8155
                     /gene="RSBN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762048"
     CDS             1590..4001
                     /gene="RSBN1"
                     /codon_start=1
                     /product="lysine-specific demethylase 9 isoform X1"
                     /protein_id="XP_032504627.1"
                     /db_xref="GeneID:116762048"
                     /translation="MFSSGRRMAEKWRVGERLQCPAGRARAALARYADGGAVGPFKCV
                     FVGEMAAQVGAVRIVRAVAGQEEPDKEGKEKPHVGVSPRGVKRQRRASSGGSQEKRGR
                     PSQDPPLAPPHRRRRSRQHPGPLPPTNAAPAVPGPVEPLLLPPPPPPSLAPAGPAVAA
                     PLPAPGTSALFTFSPLTVSAAGPKHKGHKERHKHHHHRGSDGDPGSCVPGELKHKDKQ
                     ENGERTGGVPLIKAPKRETPDENGKTQRADDFVLKKIKKKKKKKHREDMRGRRLKMYN
                     KEVQTICAGLTRISKEILTQGQINSTSGVNKESFRYLKDEQLCRLNLGMQEYRVPQGV
                     QTPFMTHQEHSIRRNFLKTGTKFSNFIHEEHQSNGGALVLHAYMDELSFLSPMEMERF
                     SEEFLALTFSENEKNAAYYALAIVHGAAAYLPDFLDYFAFNFPNTPVKMEILGKKDIE
                     TTTISNFHTQVNRTYCCGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEESPFLKMT
                     LPWGTLSSLRLQCRSQSDDGPIMWVRPGEQMIPTADMPKSPFKRRRSMNEIKNLQYLP
                     RTSEPREVLFEDRTRAHADHVGQGFDWQSTAAVGVLKAVQFGEWSDQPRITKDVICFH
                     AEDFTDVVQRLQLDLHEPPVSQCVQWVDEAKLNQMRREGIRYARIQLCDNDIYFIPRN
                     VIHQFKTVSAVCSLAWHIRLKQYHPVVEASQNTESSSNVDYDLNGKRELEVDSQCVRI
                     KTESEETCTEMQLLTTASSSFPPSSELNLQQDQMTQPIPVLKVESRLDSDQQHNLQEH
                     SSTPV"
ORIGIN      
        1 ccatggccgc tgagcctgcg cgtccggagc ctgtgctccg caacgggaga tgccacagca
       61 gtgagaggcc cgcgtaccgc aaataaataa ataaataaat aaaaataata aatatatgta
      121 atgacagtaa tgagtttttc gtttggatat accaaataac aagatgttca agcacattcc
      181 tgacaagctt tagccaatgt tattcattta ccaaatctag aagaataatc aacaaagtag
      241 ctatcttttg gtggcatttt ttttcatttc aaaggtccta tataaacatg tacaatttat
      301 atccaactaa ctagaggcac tactaattaa aaattttttt ctatatgaat atggatctgc
      361 cttatcttaa agttgatctt tcaaatctaa ttttatgtaa ctagtgggta attattacaa
      421 aggattcctc tgacatccta atgacttcac ttaagtgttc ataactttct aaaaaatgaa
      481 atatttaagc agcatttgtt cttcaatatt tttcattagg aatcccaatg aaggcacaca
      541 ctggatgaaa tattacctgt ttattgtagt gtaatgtaca caagaggtgc tcaataaact
      601 ttttggtttt taaactaact ttatagtgtt catcgagctg agtacttttc caggtactag
      661 tgtcatcaaa ccacagagat tttatctgag tactttattg taatcaatta tttccaaata
      721 tctttatcaa ggcggtaaaa tgtaaagtga cgatcaaatt gtaaataaat ttcttggcgg
      781 aaaccttggt gagtagtgac gatttctgga gtgttctctg gtagacacac ttctcaaatt
      841 tatgcaatcg tatacttacg atttgaaaaa aatcttatta agaaatttca aaacatgttt
      901 ttccatctag aattttcccg taattgtagg gaaggattca aaataatgga tgaactctat
      961 acatttccag gcactagagg ggatgtggct cgacggcgag gtgggcggcg ctcaccaggc
     1021 tcccaggcag ttcttgcacc tgccttgtcg cgcctatact tgtaaccatg gcaatcagtg
     1081 gccaggaaga ggttcagaaa tgtctgattt gcagctccgt tcgattttaa agcaaaatcg
     1141 ccctcatttg acatattacc aagttccttt ttcctctgca tctcatcgtt tgtccagtgg
     1201 taaaaggccg gggattcttg tacctcacaa aggttatgag aggaatagga aattgaaaag
     1261 taactatgga gaccaactcc tccgtgtaaa atgacgaaga ggcacacgga gacgataatg
     1321 ggaacgcgcc gacagactga aagccattaa cattgtttcg gccgttaaag cggttggcgg
     1381 caactctccg cccagcggcg gttgcgtcgc agcccgaagc gtgactcggc gcacgctccc
     1441 tttcggctcc tctgctcacc gagccagcga cgcggcgggg tcacggagaa ctaccgctcc
     1501 cgtgaggctc tgcgcggccc agagtgcttt acaatagagc tcggttggag ggccctgcgg
     1561 agaagctccg gtaagtactg cttccggcca tgttcagctc tggacgaaga atggccgaga
     1621 agtggagagt gggggagaga ctccaatgcc cagcgggccg tgcgcgggcg gcgcttgcgc
     1681 ggtacgcgga cgggggggcg gtcgggccat ttaaatgtgt gtttgtgggt gaaatggctg
     1741 cgcaggtcgg agcggtccgc atagtacggg cggtggcggg gcaggaggag ccggacaaag
     1801 aggggaagga gaaaccccac gttggggtct cgccgcgggg agtgaagcgg cagcgccgag
     1861 cgagcagtgg ggggtctcag gagaagcggg ggcggccgag ccaggacccc cctctcgctc
     1921 cccctcaccg gcggcgtcgc agccgccaac atcccgggcc gctgccgcct acgaatgcag
     1981 ccccagccgt cccaggccct gttgagcctc tgctcctgcc tcctccgccg ccaccttcgc
     2041 tggcacccgc cgggcccgct gttgctgccc cgctcccggc cccgggcact tcggccctct
     2101 tcaccttctc gcccctgacg gtgagcgcgg ccgggcccaa gcataagggc cacaaggagc
     2161 ggcacaagca ccatcaccac cgcggctctg atggtgaccc cggctcctgc gttccgggag
     2221 agctcaagca caaggacaag caggaaaacg gcgagaggac tggaggggtg cctctaatca
     2281 aggcccccaa gagagaaaca ccagatgaaa atggtaaaac ccagagagct gatgattttg
     2341 tcttgaagaa aataaagaag aaaaagaaaa agaaacaccg agaagatatg cgaggaagac
     2401 gccttaaaat gtacaataag gaagtacaaa ccatctgtgc tggcctgacc cgcatcagta
     2461 aggaaatcct cacccaagga caaataaata gcacttcagg agttaataag gagtccttca
     2521 ggtatctgaa agatgaacag ctgtgtcgat taaatttggg catgcaagaa tatcgggtac
     2581 cccagggagt acaaacacct tttatgactc accaggaaca ttctattcgt agaaatttct
     2641 taaaaacagg tactaaattt agcaacttta ttcatgagga acaccagtcc aatggtggtg
     2701 ctcttgtcct tcatgcttac atggatgaac tctcattttt gtctccaatg gagatggaga
     2761 gattttctga ggagtttctt gctttgacat tcagtgaaaa tgagaaaaat gctgcttact
     2821 atgctttagc aatagtgcat ggagcggccg cttatctccc agacttcttg gactactttg
     2881 cttttaattt ccccaacact ccagtgaaaa tggaaattct gggcaagaaa gatattgaaa
     2941 caaccaccat ttcaaatttt cacactcagg tcaacaggac atactgctgt ggcacctacc
     3001 gagcaggtcc tatgcggcag ataagtcttg ttggagcagt agatgaagaa gttggtgatt
     3061 atttcccaga gttccttgat atgttagaag aatcaccatt tctgaaaatg actttgccct
     3121 ggggtacact ttctagcctt cgactccagt gtaggtccca gagtgatgat gggcctatca
     3181 tgtgggtaag gccaggagag cagatgatcc ctacagcaga tatgccaaag tcacccttca
     3241 aaagacgacg atcaatgaat gaaataaaaa atctccagta cctacctcgg accagtgaac
     3301 cccgtgaagt cctctttgaa gacaggacaa gagctcatgc tgatcatgta ggtcaggggt
     3361 ttgactggca gagtacggct gctgttgggg ttttgaaagc tgtacagttt ggtgaatgga
     3421 gtgaccaacc tcgcataacc aaagatgtga tttgttttca tgctgaggat tttactgatg
     3481 ttgtacagag acttcagttg gaccttcatg aacctccagt ttcccagtgt gtgcagtggg
     3541 tggatgaagc gaaactaaac caaatgaggc gggaaggcat tcgttatgct agaattcagc
     3601 tgtgcgacaa tgatatctac ttcatcccta gaaatgtcat tcatcagttc aaaacagtgt
     3661 cagcagtgtg cagcttagcc tggcatataa ggcttaaaca gtaccaccct gttgtggaag
     3721 cctctcaaaa cacagaaagc agttctaacg tggactatga tttaaatgga aagagagaat
     3781 tagaagttga ctcccagtgt gtgagaataa aaactgaatc tgaggaaaca tgcacagaga
     3841 tgcaactttt gacaactgct tcatcgtcct tcccaccttc atctgaactt aatctacagc
     3901 aagatcagat gactcagcct attccagttt taaaggtgga aagtagactg gactctgacc
     3961 agcaacacaa tctacaggaa cattcaagca ctcctgtgtg atatgtacat attcaaacac
     4021 attttttaac ttttttaaat tttgatgtga agttatagtt ttataactgg cttaagttaa
     4081 gttttattgg agaaatcttg cctataattc tataaagaga aatgacattc cacaaatgtc
     4141 aagcatatct tttttacaca gattatgcaa agttaagagt tgtatcttat cccgttagta
     4201 cagtatgtaa tagtgggtct gctgctactt tctgttttaa ggtgtgaggt aacaattcaa
     4261 tctcttcttc aaatcaaaat gagaattctc tggaataaca gattcttatt tggtaaataa
     4321 ttcacttcct ttcattttat cttgccttgt ctcttgccat atttgctgtt tttatgatag
     4381 aagatcagat ttatggttta gtacttgtgc ttttatggca cagattcagt ttctacagta
     4441 aaaatggcgt aggtcgtagg aaagaattcc tgcatcttgt acatgggcaa gtcagttatt
     4501 tagttccaac cataaagaac cgatagtttc taaggaattc agtggctctc tgatttctta
     4561 acaaaagaga aagcacagca ctttctgatc caaactgtct ttttttgtat ctgttattta
     4621 aagcccagtg gatatttcaa ttaaaaatat ctaaagatga atagtccttg gtcattcatt
     4681 ctccatggtt cattaatctc ttctagaata catggtaact gtggaagata ttttgggtaa
     4741 aatagataat gttgacatga tactctgttg ttctgcttcc tagcatcctc acattctgtg
     4801 tggatacttt tgcttcctaa actgatcacg agtatcaaac ttagagaatg atacctatct
     4861 ttcagatgag gctgccatat tttgtgcatg aaacttagga aaaactattt ttgtcacttg
     4921 gcatcaacct cttcatcata aagatctgtt gagatacttc agttcacagt ttcaactggt
     4981 gaatacctgg gtttatttat tattactctg tgttgctact gtctaataaa gaatatggca
     5041 ctagacttca tcctagagtt tcaggtagcc taatccttat tagtgcctga gtatttaacc
     5101 attttttttc gaacaggcac agttcatata gctagtgtag tcttaacttt ctattatttt
     5161 agaatgttaa tgggatacac atttcacttt ctcttagtta ataatacaat aggccttttg
     5221 tttattaaag gaagagtact ccccacacct aagaccagat tcttgtatct acctggttat
     5281 agtgcaattt ggagattttt ttttctggag gttgagattt ggaatattta cattaacata
     5341 ggcaaaaaaa gatgctgctt tattatgtct gtcaccatga aaacttagct gcatcttttg
     5401 aaatatcaaa tatgaatttt ctctaaaata ttctgaaata ggttaaatct tatataaata
     5461 ttactttgtg caatattgtt gtgtagttaa atgcatatta gcaaagtata gaggtcactg
     5521 tgtaaaccga tagaaaagta accatcagca aatactgcag tgattagtta gaatctgtat
     5581 tattccttat atatatgtat atgtatgtat tctctgttaa aaaggatgaa gacaaataga
     5641 gaaacatttc aatgtaaacc atttatgaat tggaagtgat gttggtttta gttatctttg
     5701 taaataaggt aattagaatg gtatgaacag taatgtgatt attgcagggg tgttttaaaa
     5761 tcttgggtat aaattttagg gtaaattctg gtttatcaag gctagttttt aagggacctg
     5821 cctttgaggg tgttttttgt tattttgtta ttttaggggg aaggggttaa tcacaaagta
     5881 tgtgggtttg ggttatttct catttttgtt tttctgtcca gaagaatttc atagagcttt
     5941 accaggctgt gcaaagtaaa attcttctca ggcaacattt gctttttaaa ataatcatga
     6001 agaacaaggt tgttaaagca aaaactttta attttttttc ttgtcttcca agatccgatt
     6061 tccccatctc ccacttgcca tccagcagat gccatctgtc atctaagctg gtcattgcta
     6121 ataaacaagg agactgtctc ctgacagcca tcactgtgta taatcactca ggaaccagcg
     6181 gatctgcaaa gacctacaat caaaagcaaa tccccatttt ctttaaaaca ttctaccctc
     6241 aactccaata taacatatta aaagagtata aaaatgttta aaatcatgta ctaataaatt
     6301 cattgtatgt tagaattgca atagaactga gagagaaaca tttagctagt aatgtatctg
     6361 gaaactgaat gtcttatgtg agtattagat tttaatagca tgctttaaag actgatgaat
     6421 ataaaagcgc aagttttgag tttcttactt ctttaaagct gtatcctagt ttagtgatac
     6481 aaatgatagc aacttttcta aaatcattaa attatttggt ttggtggagt gaggcatgga
     6541 acaatctggc gtcttctgac ttgtaaagta gtgatggcag tgaagttgta actgaaatgt
     6601 aagctgatct tccttttttg gtatgttacc tgttgtgcca gctctttgag attacttgca
     6661 gaatgtggct ataagtttta gtattttgtg gagcagaggg atatttttta aatgtgctta
     6721 tggaaaggac ccagtaaatg agtaaactta gtaactagaa cgattttatg gtattcatta
     6781 atcaggagaa aagtcttccc cctgccccag aagtcattct ataattacca ggatacacta
     6841 ggagtaggat tatgattcaa agaagtatcc caaattcata aagcaataat aatcaaaatt
     6901 acatatttct ttcccttcca aagtttttaa ctctttaaaa atgaattcct aggcttaatt
     6961 gtacttttaa tttgctaatt tagtacttag aatttgtttc actggtactt tattattttg
     7021 aatttaaaga cttttgaaag gtaccctttc cccttagaga tagttggaat aacagtagac
     7081 taatattaaa agctcttgta gggggaaaat ggggcttatc atataaaatt atttactaaa
     7141 ccttaggaaa aggtgtcttg catcagtctt aataggcata aagttcatgc ttaatgactg
     7201 gagaaacttt tgcttattgc ctttccctct ataattactg tctagaatga aagctaattt
     7261 aggaacaaga taccaaaatt caaaaaaccc cttactgcat gtattcttta ttattattag
     7321 ttcattatta gatcatttat tttcatctat atttgccatt aaaaatttat ttgcatttat
     7381 atctttagaa taattgagtt tgtgtctgat aaatctgttt tatcattgct acaggtttta
     7441 aaaaaaaaac tttcactagt acatgccaga ggttcatatt tctgctaagt attatttttt
     7501 aaaaaacagg ttgtagctgt atttattcgt catgcagtaa gtagaggaaa tgtacaagac
     7561 agatgttttt ctttagcaca taagggacct atcctcatcc tgaaagtttg ttgctttaaa
     7621 agcaagtatc tctccataaa tattatggcc ttccattttc ttcatacatc ttttaggatt
     7681 cacttgtgca tgtagttgag accactgtct cttaatatag cacttttcaa ttctctctaa
     7741 agaaatactt aatgtactac ttctatcaca tgttgtaaat tttcatgtaa tagtgttttc
     7801 tgtgactaaa ctccattttg attggcagct aagacttttt ttcctgtggc tttaatttat
     7861 ctaagaggtc tttgcatata gatgaaatgt ataatttgcc tggcggacta tttgcgtttt
     7921 gtggccttag tttgtttatt gacattaatg agtgttttaa aaaggttttt aatgaatagt
     7981 cttaaatcta aatttgtgtg aataataatc cttttaacac agtgcttttt tgtagctgtc
     8041 taagtgtgtt aaattgttaa gctatttctt tgtaaaatag gacaatggaa tgcatagagt
     8101 tttttttttt cctgtaaagt atttttttaa taaacaaagt ctgatttgtc cttta
//
LOCUS       XM_032648745            7818 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus round spermatid basic protein 1 (RSBN1),
            transcript variant X2, mRNA.
ACCESSION   XM_032648745
VERSION     XM_032648745.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7818
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7818
                     /gene="RSBN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762048"
     CDS             1590..3671
                     /gene="RSBN1"
                     /codon_start=1
                     /product="lysine-specific demethylase 9 isoform X2"
                     /protein_id="XP_032504636.1"
                     /db_xref="GeneID:116762048"
                     /translation="MFSSGRRMAEKWRVGERLQCPAGRARAALARYADGGAVGPFKCV
                     FVGEMAAQVGAVRIVRAVAGQEEPDKEGKEKPHVGVSPRGVKRQRRASSGGSQEKRGR
                     PSQDPPLAPPHRRRRSRQHPGPLPPTNAAPAVPGPVEPLLLPPPPPPSLAPAGPAVAA
                     PLPAPGTSALFTFSPLTVSAAGPKHKGHKERHKHHHHRGSDGDPGSCVPGELKHKDKQ
                     ENGERTGGVPLIKAPKRETPDENGKTQRADDFVLKKIKKKKKKKHREDMRGRRLKMYN
                     KEVQTICAGLTRISKEILTQGQINSTSGVNKESFSRESRSSQSGEVARWGCPRCWNTM
                     CNKGLRLGFWPCYHNQVNRTYCCGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEES
                     PFLKMTLPWGTLSSLRLQCRSQSDDGPIMWVRPGEQMIPTADMPKSPFKRRRSMNEIK
                     NLQYLPRTSEPREVLFEDRTRAHADHVGQGFDWQSTAAVGVLKAVQFGEWSDQPRITK
                     DVICFHAEDFTDVVQRLQLDLHEPPVSQCVQWVDEAKLNQMRREGIRYARIQLCDNDI
                     YFIPRNVIHQFKTVSAVCSLAWHIRLKQYHPVVEASQNTESSSNVDYDLNGKRELEVD
                     SQCVRIKTESEETCTEMQLLTTASSSFPPSSELNLQQDQMTQPIPVLKVESRLDSDQQ
                     HNLQEHSSTPV"
ORIGIN      
        1 ccatggccgc tgagcctgcg cgtccggagc ctgtgctccg caacgggaga tgccacagca
       61 gtgagaggcc cgcgtaccgc aaataaataa ataaataaat aaaaataata aatatatgta
      121 atgacagtaa tgagtttttc gtttggatat accaaataac aagatgttca agcacattcc
      181 tgacaagctt tagccaatgt tattcattta ccaaatctag aagaataatc aacaaagtag
      241 ctatcttttg gtggcatttt ttttcatttc aaaggtccta tataaacatg tacaatttat
      301 atccaactaa ctagaggcac tactaattaa aaattttttt ctatatgaat atggatctgc
      361 cttatcttaa agttgatctt tcaaatctaa ttttatgtaa ctagtgggta attattacaa
      421 aggattcctc tgacatccta atgacttcac ttaagtgttc ataactttct aaaaaatgaa
      481 atatttaagc agcatttgtt cttcaatatt tttcattagg aatcccaatg aaggcacaca
      541 ctggatgaaa tattacctgt ttattgtagt gtaatgtaca caagaggtgc tcaataaact
      601 ttttggtttt taaactaact ttatagtgtt catcgagctg agtacttttc caggtactag
      661 tgtcatcaaa ccacagagat tttatctgag tactttattg taatcaatta tttccaaata
      721 tctttatcaa ggcggtaaaa tgtaaagtga cgatcaaatt gtaaataaat ttcttggcgg
      781 aaaccttggt gagtagtgac gatttctgga gtgttctctg gtagacacac ttctcaaatt
      841 tatgcaatcg tatacttacg atttgaaaaa aatcttatta agaaatttca aaacatgttt
      901 ttccatctag aattttcccg taattgtagg gaaggattca aaataatgga tgaactctat
      961 acatttccag gcactagagg ggatgtggct cgacggcgag gtgggcggcg ctcaccaggc
     1021 tcccaggcag ttcttgcacc tgccttgtcg cgcctatact tgtaaccatg gcaatcagtg
     1081 gccaggaaga ggttcagaaa tgtctgattt gcagctccgt tcgattttaa agcaaaatcg
     1141 ccctcatttg acatattacc aagttccttt ttcctctgca tctcatcgtt tgtccagtgg
     1201 taaaaggccg gggattcttg tacctcacaa aggttatgag aggaatagga aattgaaaag
     1261 taactatgga gaccaactcc tccgtgtaaa atgacgaaga ggcacacgga gacgataatg
     1321 ggaacgcgcc gacagactga aagccattaa cattgtttcg gccgttaaag cggttggcgg
     1381 caactctccg cccagcggcg gttgcgtcgc agcccgaagc gtgactcggc gcacgctccc
     1441 tttcggctcc tctgctcacc gagccagcga cgcggcgggg tcacggagaa ctaccgctcc
     1501 cgtgaggctc tgcgcggccc agagtgcttt acaatagagc tcggttggag ggccctgcgg
     1561 agaagctccg gtaagtactg cttccggcca tgttcagctc tggacgaaga atggccgaga
     1621 agtggagagt gggggagaga ctccaatgcc cagcgggccg tgcgcgggcg gcgcttgcgc
     1681 ggtacgcgga cgggggggcg gtcgggccat ttaaatgtgt gtttgtgggt gaaatggctg
     1741 cgcaggtcgg agcggtccgc atagtacggg cggtggcggg gcaggaggag ccggacaaag
     1801 aggggaagga gaaaccccac gttggggtct cgccgcgggg agtgaagcgg cagcgccgag
     1861 cgagcagtgg ggggtctcag gagaagcggg ggcggccgag ccaggacccc cctctcgctc
     1921 cccctcaccg gcggcgtcgc agccgccaac atcccgggcc gctgccgcct acgaatgcag
     1981 ccccagccgt cccaggccct gttgagcctc tgctcctgcc tcctccgccg ccaccttcgc
     2041 tggcacccgc cgggcccgct gttgctgccc cgctcccggc cccgggcact tcggccctct
     2101 tcaccttctc gcccctgacg gtgagcgcgg ccgggcccaa gcataagggc cacaaggagc
     2161 ggcacaagca ccatcaccac cgcggctctg atggtgaccc cggctcctgc gttccgggag
     2221 agctcaagca caaggacaag caggaaaacg gcgagaggac tggaggggtg cctctaatca
     2281 aggcccccaa gagagaaaca ccagatgaaa atggtaaaac ccagagagct gatgattttg
     2341 tcttgaagaa aataaagaag aaaaagaaaa agaaacaccg agaagatatg cgaggaagac
     2401 gccttaaaat gtacaataag gaagtacaaa ccatctgtgc tggcctgacc cgcatcagta
     2461 aggaaatcct cacccaagga caaataaata gcacttcagg agttaataag gagtccttca
     2521 gtagagagag caggagcagc caatctggag aggtcgcaag atggggctgc ccaagatgtt
     2581 ggaacacgat gtgcaataaa gggcttcgtc ttggattttg gccttgttac cacaatcagg
     2641 tcaacaggac atactgctgt ggcacctacc gagcaggtcc tatgcggcag ataagtcttg
     2701 ttggagcagt agatgaagaa gttggtgatt atttcccaga gttccttgat atgttagaag
     2761 aatcaccatt tctgaaaatg actttgccct ggggtacact ttctagcctt cgactccagt
     2821 gtaggtccca gagtgatgat gggcctatca tgtgggtaag gccaggagag cagatgatcc
     2881 ctacagcaga tatgccaaag tcacccttca aaagacgacg atcaatgaat gaaataaaaa
     2941 atctccagta cctacctcgg accagtgaac cccgtgaagt cctctttgaa gacaggacaa
     3001 gagctcatgc tgatcatgta ggtcaggggt ttgactggca gagtacggct gctgttgggg
     3061 ttttgaaagc tgtacagttt ggtgaatgga gtgaccaacc tcgcataacc aaagatgtga
     3121 tttgttttca tgctgaggat tttactgatg ttgtacagag acttcagttg gaccttcatg
     3181 aacctccagt ttcccagtgt gtgcagtggg tggatgaagc gaaactaaac caaatgaggc
     3241 gggaaggcat tcgttatgct agaattcagc tgtgcgacaa tgatatctac ttcatcccta
     3301 gaaatgtcat tcatcagttc aaaacagtgt cagcagtgtg cagcttagcc tggcatataa
     3361 ggcttaaaca gtaccaccct gttgtggaag cctctcaaaa cacagaaagc agttctaacg
     3421 tggactatga tttaaatgga aagagagaat tagaagttga ctcccagtgt gtgagaataa
     3481 aaactgaatc tgaggaaaca tgcacagaga tgcaactttt gacaactgct tcatcgtcct
     3541 tcccaccttc atctgaactt aatctacagc aagatcagat gactcagcct attccagttt
     3601 taaaggtgga aagtagactg gactctgacc agcaacacaa tctacaggaa cattcaagca
     3661 ctcctgtgtg atatgtacat attcaaacac attttttaac ttttttaaat tttgatgtga
     3721 agttatagtt ttataactgg cttaagttaa gttttattgg agaaatcttg cctataattc
     3781 tataaagaga aatgacattc cacaaatgtc aagcatatct tttttacaca gattatgcaa
     3841 agttaagagt tgtatcttat cccgttagta cagtatgtaa tagtgggtct gctgctactt
     3901 tctgttttaa ggtgtgaggt aacaattcaa tctcttcttc aaatcaaaat gagaattctc
     3961 tggaataaca gattcttatt tggtaaataa ttcacttcct ttcattttat cttgccttgt
     4021 ctcttgccat atttgctgtt tttatgatag aagatcagat ttatggttta gtacttgtgc
     4081 ttttatggca cagattcagt ttctacagta aaaatggcgt aggtcgtagg aaagaattcc
     4141 tgcatcttgt acatgggcaa gtcagttatt tagttccaac cataaagaac cgatagtttc
     4201 taaggaattc agtggctctc tgatttctta acaaaagaga aagcacagca ctttctgatc
     4261 caaactgtct ttttttgtat ctgttattta aagcccagtg gatatttcaa ttaaaaatat
     4321 ctaaagatga atagtccttg gtcattcatt ctccatggtt cattaatctc ttctagaata
     4381 catggtaact gtggaagata ttttgggtaa aatagataat gttgacatga tactctgttg
     4441 ttctgcttcc tagcatcctc acattctgtg tggatacttt tgcttcctaa actgatcacg
     4501 agtatcaaac ttagagaatg atacctatct ttcagatgag gctgccatat tttgtgcatg
     4561 aaacttagga aaaactattt ttgtcacttg gcatcaacct cttcatcata aagatctgtt
     4621 gagatacttc agttcacagt ttcaactggt gaatacctgg gtttatttat tattactctg
     4681 tgttgctact gtctaataaa gaatatggca ctagacttca tcctagagtt tcaggtagcc
     4741 taatccttat tagtgcctga gtatttaacc attttttttc gaacaggcac agttcatata
     4801 gctagtgtag tcttaacttt ctattatttt agaatgttaa tgggatacac atttcacttt
     4861 ctcttagtta ataatacaat aggccttttg tttattaaag gaagagtact ccccacacct
     4921 aagaccagat tcttgtatct acctggttat agtgcaattt ggagattttt ttttctggag
     4981 gttgagattt ggaatattta cattaacata ggcaaaaaaa gatgctgctt tattatgtct
     5041 gtcaccatga aaacttagct gcatcttttg aaatatcaaa tatgaatttt ctctaaaata
     5101 ttctgaaata ggttaaatct tatataaata ttactttgtg caatattgtt gtgtagttaa
     5161 atgcatatta gcaaagtata gaggtcactg tgtaaaccga tagaaaagta accatcagca
     5221 aatactgcag tgattagtta gaatctgtat tattccttat atatatgtat atgtatgtat
     5281 tctctgttaa aaaggatgaa gacaaataga gaaacatttc aatgtaaacc atttatgaat
     5341 tggaagtgat gttggtttta gttatctttg taaataaggt aattagaatg gtatgaacag
     5401 taatgtgatt attgcagggg tgttttaaaa tcttgggtat aaattttagg gtaaattctg
     5461 gtttatcaag gctagttttt aagggacctg cctttgaggg tgttttttgt tattttgtta
     5521 ttttaggggg aaggggttaa tcacaaagta tgtgggtttg ggttatttct catttttgtt
     5581 tttctgtcca gaagaatttc atagagcttt accaggctgt gcaaagtaaa attcttctca
     5641 ggcaacattt gctttttaaa ataatcatga agaacaaggt tgttaaagca aaaactttta
     5701 attttttttc ttgtcttcca agatccgatt tccccatctc ccacttgcca tccagcagat
     5761 gccatctgtc atctaagctg gtcattgcta ataaacaagg agactgtctc ctgacagcca
     5821 tcactgtgta taatcactca ggaaccagcg gatctgcaaa gacctacaat caaaagcaaa
     5881 tccccatttt ctttaaaaca ttctaccctc aactccaata taacatatta aaagagtata
     5941 aaaatgttta aaatcatgta ctaataaatt cattgtatgt tagaattgca atagaactga
     6001 gagagaaaca tttagctagt aatgtatctg gaaactgaat gtcttatgtg agtattagat
     6061 tttaatagca tgctttaaag actgatgaat ataaaagcgc aagttttgag tttcttactt
     6121 ctttaaagct gtatcctagt ttagtgatac aaatgatagc aacttttcta aaatcattaa
     6181 attatttggt ttggtggagt gaggcatgga acaatctggc gtcttctgac ttgtaaagta
     6241 gtgatggcag tgaagttgta actgaaatgt aagctgatct tccttttttg gtatgttacc
     6301 tgttgtgcca gctctttgag attacttgca gaatgtggct ataagtttta gtattttgtg
     6361 gagcagaggg atatttttta aatgtgctta tggaaaggac ccagtaaatg agtaaactta
     6421 gtaactagaa cgattttatg gtattcatta atcaggagaa aagtcttccc cctgccccag
     6481 aagtcattct ataattacca ggatacacta ggagtaggat tatgattcaa agaagtatcc
     6541 caaattcata aagcaataat aatcaaaatt acatatttct ttcccttcca aagtttttaa
     6601 ctctttaaaa atgaattcct aggcttaatt gtacttttaa tttgctaatt tagtacttag
     6661 aatttgtttc actggtactt tattattttg aatttaaaga cttttgaaag gtaccctttc
     6721 cccttagaga tagttggaat aacagtagac taatattaaa agctcttgta gggggaaaat
     6781 ggggcttatc atataaaatt atttactaaa ccttaggaaa aggtgtcttg catcagtctt
     6841 aataggcata aagttcatgc ttaatgactg gagaaacttt tgcttattgc ctttccctct
     6901 ataattactg tctagaatga aagctaattt aggaacaaga taccaaaatt caaaaaaccc
     6961 cttactgcat gtattcttta ttattattag ttcattatta gatcatttat tttcatctat
     7021 atttgccatt aaaaatttat ttgcatttat atctttagaa taattgagtt tgtgtctgat
     7081 aaatctgttt tatcattgct acaggtttta aaaaaaaaac tttcactagt acatgccaga
     7141 ggttcatatt tctgctaagt attatttttt aaaaaacagg ttgtagctgt atttattcgt
     7201 catgcagtaa gtagaggaaa tgtacaagac agatgttttt ctttagcaca taagggacct
     7261 atcctcatcc tgaaagtttg ttgctttaaa agcaagtatc tctccataaa tattatggcc
     7321 ttccattttc ttcatacatc ttttaggatt cacttgtgca tgtagttgag accactgtct
     7381 cttaatatag cacttttcaa ttctctctaa agaaatactt aatgtactac ttctatcaca
     7441 tgttgtaaat tttcatgtaa tagtgttttc tgtgactaaa ctccattttg attggcagct
     7501 aagacttttt ttcctgtggc tttaatttat ctaagaggtc tttgcatata gatgaaatgt
     7561 ataatttgcc tggcggacta tttgcgtttt gtggccttag tttgtttatt gacattaatg
     7621 agtgttttaa aaaggttttt aatgaatagt cttaaatcta aatttgtgtg aataataatc
     7681 cttttaacac agtgcttttt tgtagctgtc taagtgtgtt aaattgttaa gctatttctt
     7741 tgtaaaatag gacaatggaa tgcatagagt tttttttttt cctgtaaagt atttttttaa
     7801 taaacaaagt ctgatttg
//
LOCUS       XR_004352211             814 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116762055
            (LOC116762055), ncRNA.
ACCESSION   XR_004352211
VERSION     XR_004352211.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..814
                     /gene="LOC116762055"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116762055"
     ncRNA           1..814
                     /ncRNA_class="lncRNA"
                     /gene="LOC116762055"
                     /product="uncharacterized LOC116762055"
                     /db_xref="GeneID:116762055"
ORIGIN      
        1 cgcctttaga agcccgcgct tccgtagacc ttgagtttcc cgggtaactg gggcacagta
       61 gggctgccag tactttgact atatgaagca tgatgtggtg ggaagagtaa gctttggcgc
      121 acaaaaagat gagtaattgg atcaattaca aatgaaaaga tgggggtact tataagaaga
      181 aggcaagagg atcagagaag aaaaggagat gtgatgacag agacattagt cagagtgatg
      241 aagggccacc agccgaggaa cgtgagtagt ttcacaagct ggcaaaggca agaaaatgga
      301 ttctccccca gtacctgcaa aagaaactca gctctaccaa ctcattttgg acttctgacc
      361 tccagaacta gaagatgata aacttgattg ttttaagcca ctgagttcat ggtaatttgt
      421 tacagcagca ataggaaact actgtaggta tttaaactgt gaacagtggt tattgccctc
      481 tggagttctg agaatgaaga ttggggtctt agagggcttt tactctccat ccttcacact
      541 tttttgtttt attatggatt tgtatagcat ctttaataaa aataaataat cattaaaaga
      601 gaaactagat aatattaagt gaaataaatt gtatatggaa tctctcaacc atgtaaaaaa
      661 ttagatgaaa ataagaagga agcttactaa aatgttagca gttttcagtc ctgggtattg
      721 agattgggga tgttcaatat tcatgtacct gttcattcac tcaacagtga atgaactgtt
      781 gaacactgaa tatttttaaa aaatattctt tttt
//
LOCUS       XM_032648769            2011 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immunoglobulin superfamily DCC subclass
            member 3-like (LOC116762058), mRNA.
ACCESSION   XM_032648769
VERSION     XM_032648769.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2011
                     /gene="LOC116762058"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762058"
     CDS             175..975
                     /gene="LOC116762058"
                     /codon_start=1
                     /product="immunoglobulin superfamily DCC subclass member
                     3-like"
                     /protein_id="XP_032504660.1"
                     /db_xref="GeneID:116762058"
                     /translation="MHRHRPPMATGLLEPPGWPIHRRRGHPSPGHWEPHDLRCVGPAL
                     SRLRLCGQSAGNPGPTHSTGRPARAGTLMLAGISAEDEAIYQCVAENSAGSNQASTRL
                     AVTGDPEPPLAPRGLQAMALSTFAIRVFWEPPPSNGDITGYVLHLRPVGAPAAVGFST
                     KVLNATSVQASWELPSQLGPIQGFKLFHCKLPAAHFEGALLLASTVSSFLYTDLEPAA
                     LYEIKLQTFSGNGDGNSSAHVVSLREVPLATPDGTVSRVQGWVLLQPG"
     misc_feature    307..486
                     /gene="LOC116762058"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    313..327
                     /gene="LOC116762058"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    382..396
                     /gene="LOC116762058"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    424..441
                     /gene="LOC116762058"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    <427..>939
                     /gene="LOC116762058"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    463..474
                     /gene="LOC116762058"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 aacttggggc ctgcttagcc ctgatacagg cagacctcgg aagtactgca ggttccgtgc
       61 cagaccacag cgaatatcac aataaatggg atccccacgg ctcctgcagg agcccgagtt
      121 tctgtctgga cctcagaacc tgacactcac ggtgcaccaa acggcagtgc tggaatgcat
      181 cgccacaggc cacccatggc cactggtctc ctggagccac ctggatggcc aatccatcgg
      241 cgtagagggc atccaagtcc tgggcactgg gaacctcatg atctccgatg tgtcggtcca
      301 gcactcagcc gtctacgtct gtgcggccaa tcggccggga acccgggtcc gacgcacagc
      361 acagggcgtc ctgctcgtgc aggcacactg atgctggcgg ggatctcagc agaggacgag
      421 gccatctacc aatgcgtggc agagaacagc gcgggctcca accaggccag tacccgcctg
      481 gctgtgacag gggacccaga gccacccctt gcccccaggg gtctgcaggc aatggctctc
      541 tccacctttg ccattcgagt gttctgggaa ccaccaccct ccaatgggga catcactggc
      601 tatgtgctgc acctccggcc agttggagcc cctgctgccg ttggcttctc caccaaagtg
      661 ctcaacgcca cctctgttca ggcctcctgg gagctgccat cccagctggg gcccatccag
      721 ggcttcaaac tctttcactg caagctgccc gctgcccatt ttgagggggc cctgctcctg
      781 gctagcactg tcagttcctt cctctacaca gatctggagc cagccgccct ctatgagatc
      841 aagcttcaga cattcagtgg caacggggat ggtaacagca gtgcgcatgt tgtctctttg
      901 cgtgaagtgc ccctagccac ccctgatggc actgtgtcca gagtccaagg ctgggtgctc
      961 ttgcagccag gatgagaaga gctcgctgcc tggggttgtg gtgggcatcc acatgggcct
     1021 ggctgccctc atcgtttgcc tcctcctggg ctggagacat aggtaagggc caggatggct
     1081 atatgtggaa aactgctagg aagacagtct gcactatggt ggcacaggcc caaagagcaa
     1141 gaaagggctt ttatccctga ctaatctgtc ttacaaataa ggacactgag gcagagaggg
     1201 agggccagtt cttctcacag ctgtgtggca tcagagtggg aggaggcctg gtgggctgca
     1261 ggaagtgggg cagagagcac tggggctccc gaggcagagg gcaggcaggt ggcagaagtg
     1321 ggccagagct agatccctgc catcctttgc acgaggaagg ggcccagcct cttcccctgt
     1381 ggagtatgga acaggatgaa aggctggaac cgatggatgc taagccagag agaagcccca
     1441 gacaggtcag ggtgctgacc ctccctatcc gggcagcctc ttctgcagac aggggtccca
     1501 agagtgctgg gcagtgcctc agactgcctt ggacagagct gggggctgca gaggccaggc
     1561 tccgagtgga gggaagccgg aggagaagac tgaactcatc acccacgtga gggggattca
     1621 ggtgaggggg actgggaagg agaaagtagt gtgctttgag gctctggggc cgaagcctga
     1681 tcaccgcctt ccctctcagg tgaccgtgga gcagccgccc ttagcctagg gccctccaag
     1741 ttggctccct cccaggtgcc actaactctg gccccaccaa agaatctaca tcacctttcc
     1801 ctgccacccc ggagtcaaga aagaaccaaa ggtccctaag cccccctccg gggagggtca
     1861 ggtctgacca tagggcgaga gaagaggttg tgatttctgt ttctcccttc tcaagaaatg
     1921 gggaaatctg tgtcttcccc aacacaccaa ataacctcaa actaaaccat gtcaggtggg
     1981 agtactctcc aacccattag tcctccctca a
//
LOCUS       XM_032648779            2581 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X1, mRNA.
ACCESSION   XM_032648779
VERSION     XM_032648779.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2581
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 15 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762064"
     CDS             252..2471
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X1"
                     /protein_id="XP_032504670.1"
                     /db_xref="GeneID:116762064"
                     /translation="MPYLGSEDEVKDLKKALCNPHIQADRLRYRNVIQRVIRHMTQGS
                     DMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVR
                     GLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAVLGCAKMHTLHGDSEVDGAL
                     VNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEV
                     LNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKNFPHVQTDVLMQ
                     VKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVE
                     VLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGSIARTYTDQCVQILTELLGL
                     RQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQDSEGKQALIWLLGVHGKRI
                     PNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKD
                     MAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLEDQAERPVNSWASDFNTLVPV
                     YGKARWATISKCQGVERHGPELPNTASFATSGPLIPEENKERVQELPDSRALMLVPNH
                     QLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQVVNIQTIAMNRAGAQPWKAY
                     LSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLNSFISVLETVIGTIGDIKS"
     misc_feature    339..1817
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    507..590
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    618..701
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    726..806
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    843..917
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    2109..2447
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 ttggtgacgg caaccgcgtg gaggcgaaag aaaggctgga actggagagg gaggggtcca
       61 cggactgttg gctgccgggc tggaagtcgg gccgagggcc tagaggttgc gggagagctc
      121 tgtgggcgga gcgaacgagc ctgcaggtcc ccggaaggat ccgcagagcc tagggtcccc
      181 acatcagggc tagaaggagc ccacgagtta cctagggatc tctgggaact gccccgtgac
      241 tgttcgagaa gatgccgtac ctgggctccg aggacgaggt gaaggacctg aagaaggctc
      301 tgtgtaaccc tcacattcag gctgataggc tgcgctatcg gaatgtcatc cagcgagtga
      361 ttaggcacat gactcagggc tcagacatgt ctggtgtttt catggaaatg gtgaaggcca
      421 gtgccactat agatattgtt cagaagaagt tggtttatct ctacatgtgt acctatgccc
      481 ccctgaaacc agatctggct ctcctggcca tcaatacact gtgcaaagac tgttcggacc
      541 ccaacccgat ggtgcgaggg ttggcactac ggagcatgtg tagcctcagg ttgcctggtg
      601 tgcaggaata tctccaacag ccagttctca acggtctgca tgataaggct tcatatgtca
      661 ggagggtagc agtccttggc tgtgccaaga tgcatactct tcatggagac tctgaagtgg
      721 atggtgccct ggtaaacgaa ttatatagtt tgctgcgtga ccaggatcca attgtggttg
      781 tgaactgcct gaggtctctg gaggaaattt tgaaacagga aggaggtgtt gtcatcaata
      841 agcccatcgc ccaccatctc ttaaatcgaa tgtcaaaact ggaccagtgg ggccaggctg
      901 aagtattgaa ctttctgcta cgctaccaac cccgcagtga ggaggagctg tttgacattc
      961 tcaacctgtt ggacagtttt ctcaagagca gtagcccagg tgtggtgatg ggagccacca
     1021 aactctttct gatcttggca aaaaacttcc cccatgtgca aactgacgtg ctcatgcaag
     1081 tcaagggaac tttgctggct gcctgttctt cagagagccg cgagctctgt tttgctgccc
     1141 tctgccatgt gcgccaggtc ctgcacagtt tgccgggtca ctttagcagc cactacaaaa
     1201 agtttttttg ctcctactcg gagccccact acatcaagct ccagaaggtg gaggtgctgt
     1261 gtgagctggt gaacgacgag aacgtgcagc aggtgctgga ggagcttcgc gggtactgca
     1321 ctgatgtgtc cgccgacttc gcgcaggctg ccatctttgc cataggtagc atcgccagga
     1381 cctacacgga tcagtgtgtg cagattctaa cagagctgct ggggcttcga caagagcaca
     1441 ttaccacagt ggttgtgcag actttccgag acctggtttg gttgtgtcct cagtgtacag
     1501 aagctgtgtg tcaggccctg cccggctgtg aggagagcat tcaagatagc gaggggaagc
     1561 aggcacttat ttggctactc ggtgtccacg ggaagagaat ccccaacgct ccttatgtgt
     1621 tggaagactt cgtagagaat gtgaagtcgg agacatttcc agctgtcaag atggagctgc
     1681 tcacggctct gctgcgcctt ttcctctctc gacccgccga gtgccaggac atgctgggcc
     1741 gtttattgta ctactgcata gaggaagaaa aggatatggc agtacgggac cgaggtctct
     1801 tctactatcg cctcctctta gctggcattg atgaagtgaa gcggatccta cggagccctc
     1861 aatctgaccc ttctctcaga cttttggagg atcaggcaga aagacctgtg aacagctggg
     1921 cctcggactt caacacactg gtgccagtat atggcaaagc ccgctgggca accatctcta
     1981 aatgccaggg agtagaacgt catggcccag agctccctaa cactgcatct tttgccacat
     2041 caggacccct gattcctgaa gagaacaagg agagggtcca agaactccct gattccagag
     2101 ccctcatgct agtccccaat caccagctta ctgctgagtg ttttgagaaa acttggctga
     2161 gcctcaaagt tgctcatcag caagtgttcc cgtggcaggg agcagtccat cccgacaccc
     2221 ttcagatggc cctgcaagtc gtgaacatcc agaccatcgc gatgaacagg gctggggctc
     2281 agccgtggaa agcttacctc agcgctcagg atgacactgg ctgtctgttc ctgacagaac
     2341 tgctgttgga gcccgagaac ttgcaaatgc agatctcagt aaaacaaaac aaggcgagga
     2401 cagagacact gaacagtttt atttctgtat tagaaactgt gattggaaca attggagaca
     2461 taaaatcata acagcttctt gcctatcctg agtgagatga atagctgtca gagttcctta
     2521 gtttttctta ttgtagctgc ttgtaagtcc agataatatc aaatgcaaag gagaatggga
     2581 a
//
LOCUS       XM_032648787            2541 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X2, mRNA.
ACCESSION   XM_032648787
VERSION     XM_032648787.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2541
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762064"
     CDS             212..2431
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X1"
                     /protein_id="XP_032504678.1"
                     /db_xref="GeneID:116762064"
                     /translation="MPYLGSEDEVKDLKKALCNPHIQADRLRYRNVIQRVIRHMTQGS
                     DMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVR
                     GLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAVLGCAKMHTLHGDSEVDGAL
                     VNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEV
                     LNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKNFPHVQTDVLMQ
                     VKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVE
                     VLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGSIARTYTDQCVQILTELLGL
                     RQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQDSEGKQALIWLLGVHGKRI
                     PNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKD
                     MAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLEDQAERPVNSWASDFNTLVPV
                     YGKARWATISKCQGVERHGPELPNTASFATSGPLIPEENKERVQELPDSRALMLVPNH
                     QLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQVVNIQTIAMNRAGAQPWKAY
                     LSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLNSFISVLETVIGTIGDIKS"
     misc_feature    299..1777
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    467..550
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    578..661
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    686..766
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    803..877
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    2069..2407
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 accgcgtgga ggcgaaagaa aggctggaac tggagaggga ggggtccacg gactgttggc
       61 tgccgggctg gaagtcgggc cgagggccta gaggttgcgg gagagctctg tgggcggagc
      121 gaacgagcct gcaggtcccc acatcagggc tagaaggagc ccacgagtta cctagggatc
      181 tctgggaact gccccgtgac tgttcgagaa gatgccgtac ctgggctccg aggacgaggt
      241 gaaggacctg aagaaggctc tgtgtaaccc tcacattcag gctgataggc tgcgctatcg
      301 gaatgtcatc cagcgagtga ttaggcacat gactcagggc tcagacatgt ctggtgtttt
      361 catggaaatg gtgaaggcca gtgccactat agatattgtt cagaagaagt tggtttatct
      421 ctacatgtgt acctatgccc ccctgaaacc agatctggct ctcctggcca tcaatacact
      481 gtgcaaagac tgttcggacc ccaacccgat ggtgcgaggg ttggcactac ggagcatgtg
      541 tagcctcagg ttgcctggtg tgcaggaata tctccaacag ccagttctca acggtctgca
      601 tgataaggct tcatatgtca ggagggtagc agtccttggc tgtgccaaga tgcatactct
      661 tcatggagac tctgaagtgg atggtgccct ggtaaacgaa ttatatagtt tgctgcgtga
      721 ccaggatcca attgtggttg tgaactgcct gaggtctctg gaggaaattt tgaaacagga
      781 aggaggtgtt gtcatcaata agcccatcgc ccaccatctc ttaaatcgaa tgtcaaaact
      841 ggaccagtgg ggccaggctg aagtattgaa ctttctgcta cgctaccaac cccgcagtga
      901 ggaggagctg tttgacattc tcaacctgtt ggacagtttt ctcaagagca gtagcccagg
      961 tgtggtgatg ggagccacca aactctttct gatcttggca aaaaacttcc cccatgtgca
     1021 aactgacgtg ctcatgcaag tcaagggaac tttgctggct gcctgttctt cagagagccg
     1081 cgagctctgt tttgctgccc tctgccatgt gcgccaggtc ctgcacagtt tgccgggtca
     1141 ctttagcagc cactacaaaa agtttttttg ctcctactcg gagccccact acatcaagct
     1201 ccagaaggtg gaggtgctgt gtgagctggt gaacgacgag aacgtgcagc aggtgctgga
     1261 ggagcttcgc gggtactgca ctgatgtgtc cgccgacttc gcgcaggctg ccatctttgc
     1321 cataggtagc atcgccagga cctacacgga tcagtgtgtg cagattctaa cagagctgct
     1381 ggggcttcga caagagcaca ttaccacagt ggttgtgcag actttccgag acctggtttg
     1441 gttgtgtcct cagtgtacag aagctgtgtg tcaggccctg cccggctgtg aggagagcat
     1501 tcaagatagc gaggggaagc aggcacttat ttggctactc ggtgtccacg ggaagagaat
     1561 ccccaacgct ccttatgtgt tggaagactt cgtagagaat gtgaagtcgg agacatttcc
     1621 agctgtcaag atggagctgc tcacggctct gctgcgcctt ttcctctctc gacccgccga
     1681 gtgccaggac atgctgggcc gtttattgta ctactgcata gaggaagaaa aggatatggc
     1741 agtacgggac cgaggtctct tctactatcg cctcctctta gctggcattg atgaagtgaa
     1801 gcggatccta cggagccctc aatctgaccc ttctctcaga cttttggagg atcaggcaga
     1861 aagacctgtg aacagctggg cctcggactt caacacactg gtgccagtat atggcaaagc
     1921 ccgctgggca accatctcta aatgccaggg agtagaacgt catggcccag agctccctaa
     1981 cactgcatct tttgccacat caggacccct gattcctgaa gagaacaagg agagggtcca
     2041 agaactccct gattccagag ccctcatgct agtccccaat caccagctta ctgctgagtg
     2101 ttttgagaaa acttggctga gcctcaaagt tgctcatcag caagtgttcc cgtggcaggg
     2161 agcagtccat cccgacaccc ttcagatggc cctgcaagtc gtgaacatcc agaccatcgc
     2221 gatgaacagg gctggggctc agccgtggaa agcttacctc agcgctcagg atgacactgg
     2281 ctgtctgttc ctgacagaac tgctgttgga gcccgagaac ttgcaaatgc agatctcagt
     2341 aaaacaaaac aaggcgagga cagagacact gaacagtttt atttctgtat tagaaactgt
     2401 gattggaaca attggagaca taaaatcata acagcttctt gcctatcctg agtgagatga
     2461 atagctgtca gagttcctta gtttttctta ttgtagctgc ttgtaagtcc agataatatc
     2521 aaatgcaaag gagaatggga a
//
LOCUS       XM_032648794            2537 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X3, mRNA.
ACCESSION   XM_032648794
VERSION     XM_032648794.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2537
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762064"
     CDS             208..2427
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X1"
                     /protein_id="XP_032504685.1"
                     /db_xref="GeneID:116762064"
                     /translation="MPYLGSEDEVKDLKKALCNPHIQADRLRYRNVIQRVIRHMTQGS
                     DMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVR
                     GLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAVLGCAKMHTLHGDSEVDGAL
                     VNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEV
                     LNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKNFPHVQTDVLMQ
                     VKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVE
                     VLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGSIARTYTDQCVQILTELLGL
                     RQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQDSEGKQALIWLLGVHGKRI
                     PNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKD
                     MAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLEDQAERPVNSWASDFNTLVPV
                     YGKARWATISKCQGVERHGPELPNTASFATSGPLIPEENKERVQELPDSRALMLVPNH
                     QLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQVVNIQTIAMNRAGAQPWKAY
                     LSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLNSFISVLETVIGTIGDIKS"
     misc_feature    295..1773
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    463..546
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    574..657
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    682..762
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    799..873
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    2065..2403
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 tccgcagaaa ggttgattgg gccttttggt gacggcaacc gcgtggaggc gaaagaaagg
       61 ctggaactgg agagggaggg gtccacggac tgttggctgc cgggctggaa gtcgggccga
      121 gggcctagag gtccccacat cagggctaga aggagcccac gagttaccta gggatctctg
      181 ggaactgccc cgtgactgtt cgagaagatg ccgtacctgg gctccgagga cgaggtgaag
      241 gacctgaaga aggctctgtg taaccctcac attcaggctg ataggctgcg ctatcggaat
      301 gtcatccagc gagtgattag gcacatgact cagggctcag acatgtctgg tgttttcatg
      361 gaaatggtga aggccagtgc cactatagat attgttcaga agaagttggt ttatctctac
      421 atgtgtacct atgcccccct gaaaccagat ctggctctcc tggccatcaa tacactgtgc
      481 aaagactgtt cggaccccaa cccgatggtg cgagggttgg cactacggag catgtgtagc
      541 ctcaggttgc ctggtgtgca ggaatatctc caacagccag ttctcaacgg tctgcatgat
      601 aaggcttcat atgtcaggag ggtagcagtc cttggctgtg ccaagatgca tactcttcat
      661 ggagactctg aagtggatgg tgccctggta aacgaattat atagtttgct gcgtgaccag
      721 gatccaattg tggttgtgaa ctgcctgagg tctctggagg aaattttgaa acaggaagga
      781 ggtgttgtca tcaataagcc catcgcccac catctcttaa atcgaatgtc aaaactggac
      841 cagtggggcc aggctgaagt attgaacttt ctgctacgct accaaccccg cagtgaggag
      901 gagctgtttg acattctcaa cctgttggac agttttctca agagcagtag cccaggtgtg
      961 gtgatgggag ccaccaaact ctttctgatc ttggcaaaaa acttccccca tgtgcaaact
     1021 gacgtgctca tgcaagtcaa gggaactttg ctggctgcct gttcttcaga gagccgcgag
     1081 ctctgttttg ctgccctctg ccatgtgcgc caggtcctgc acagtttgcc gggtcacttt
     1141 agcagccact acaaaaagtt tttttgctcc tactcggagc cccactacat caagctccag
     1201 aaggtggagg tgctgtgtga gctggtgaac gacgagaacg tgcagcaggt gctggaggag
     1261 cttcgcgggt actgcactga tgtgtccgcc gacttcgcgc aggctgccat ctttgccata
     1321 ggtagcatcg ccaggaccta cacggatcag tgtgtgcaga ttctaacaga gctgctgggg
     1381 cttcgacaag agcacattac cacagtggtt gtgcagactt tccgagacct ggtttggttg
     1441 tgtcctcagt gtacagaagc tgtgtgtcag gccctgcccg gctgtgagga gagcattcaa
     1501 gatagcgagg ggaagcaggc acttatttgg ctactcggtg tccacgggaa gagaatcccc
     1561 aacgctcctt atgtgttgga agacttcgta gagaatgtga agtcggagac atttccagct
     1621 gtcaagatgg agctgctcac ggctctgctg cgccttttcc tctctcgacc cgccgagtgc
     1681 caggacatgc tgggccgttt attgtactac tgcatagagg aagaaaagga tatggcagta
     1741 cgggaccgag gtctcttcta ctatcgcctc ctcttagctg gcattgatga agtgaagcgg
     1801 atcctacgga gccctcaatc tgacccttct ctcagacttt tggaggatca ggcagaaaga
     1861 cctgtgaaca gctgggcctc ggacttcaac acactggtgc cagtatatgg caaagcccgc
     1921 tgggcaacca tctctaaatg ccagggagta gaacgtcatg gcccagagct ccctaacact
     1981 gcatcttttg ccacatcagg acccctgatt cctgaagaga acaaggagag ggtccaagaa
     2041 ctccctgatt ccagagccct catgctagtc cccaatcacc agcttactgc tgagtgtttt
     2101 gagaaaactt ggctgagcct caaagttgct catcagcaag tgttcccgtg gcagggagca
     2161 gtccatcccg acacccttca gatggccctg caagtcgtga acatccagac catcgcgatg
     2221 aacagggctg gggctcagcc gtggaaagct tacctcagcg ctcaggatga cactggctgt
     2281 ctgttcctga cagaactgct gttggagccc gagaacttgc aaatgcagat ctcagtaaaa
     2341 caaaacaagg cgaggacaga gacactgaac agttttattt ctgtattaga aactgtgatt
     2401 ggaacaattg gagacataaa atcataacag cttcttgcct atcctgagtg agatgaatag
     2461 ctgtcagagt tccttagttt ttcttattgt agctgcttgt aagtccagat aatatcaaat
     2521 gcaaaggaga atgggaa
//
LOCUS       XM_032648802            2529 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X4, mRNA.
ACCESSION   XM_032648802
VERSION     XM_032648802.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2529
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762064"
     CDS             200..2419
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X1"
                     /protein_id="XP_032504693.1"
                     /db_xref="GeneID:116762064"
                     /translation="MPYLGSEDEVKDLKKALCNPHIQADRLRYRNVIQRVIRHMTQGS
                     DMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVR
                     GLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAVLGCAKMHTLHGDSEVDGAL
                     VNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEV
                     LNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKNFPHVQTDVLMQ
                     VKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVE
                     VLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGSIARTYTDQCVQILTELLGL
                     RQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQDSEGKQALIWLLGVHGKRI
                     PNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKD
                     MAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLEDQAERPVNSWASDFNTLVPV
                     YGKARWATISKCQGVERHGPELPNTASFATSGPLIPEENKERVQELPDSRALMLVPNH
                     QLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQVVNIQTIAMNRAGAQPWKAY
                     LSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLNSFISVLETVIGTIGDIKS"
     misc_feature    287..1765
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    455..538
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    566..649
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    674..754
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    791..865
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    2057..2395
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 ctccctggcc ccaactctat gactccaagg ctgtgacaga tcggaagtcc ccacccagct
       61 gccgggacca actctcggag gccgactcca gccgcccata cctgtcggtg acggtgcaag
      121 aggtccccac atcagggcta gaaggagccc acgagttacc tagggatctc tgggaactgc
      181 cccgtgactg ttcgagaaga tgccgtacct gggctccgag gacgaggtga aggacctgaa
      241 gaaggctctg tgtaaccctc acattcaggc tgataggctg cgctatcgga atgtcatcca
      301 gcgagtgatt aggcacatga ctcagggctc agacatgtct ggtgttttca tggaaatggt
      361 gaaggccagt gccactatag atattgttca gaagaagttg gtttatctct acatgtgtac
      421 ctatgccccc ctgaaaccag atctggctct cctggccatc aatacactgt gcaaagactg
      481 ttcggacccc aacccgatgg tgcgagggtt ggcactacgg agcatgtgta gcctcaggtt
      541 gcctggtgtg caggaatatc tccaacagcc agttctcaac ggtctgcatg ataaggcttc
      601 atatgtcagg agggtagcag tccttggctg tgccaagatg catactcttc atggagactc
      661 tgaagtggat ggtgccctgg taaacgaatt atatagtttg ctgcgtgacc aggatccaat
      721 tgtggttgtg aactgcctga ggtctctgga ggaaattttg aaacaggaag gaggtgttgt
      781 catcaataag cccatcgccc accatctctt aaatcgaatg tcaaaactgg accagtgggg
      841 ccaggctgaa gtattgaact ttctgctacg ctaccaaccc cgcagtgagg aggagctgtt
      901 tgacattctc aacctgttgg acagttttct caagagcagt agcccaggtg tggtgatggg
      961 agccaccaaa ctctttctga tcttggcaaa aaacttcccc catgtgcaaa ctgacgtgct
     1021 catgcaagtc aagggaactt tgctggctgc ctgttcttca gagagccgcg agctctgttt
     1081 tgctgccctc tgccatgtgc gccaggtcct gcacagtttg ccgggtcact ttagcagcca
     1141 ctacaaaaag tttttttgct cctactcgga gccccactac atcaagctcc agaaggtgga
     1201 ggtgctgtgt gagctggtga acgacgagaa cgtgcagcag gtgctggagg agcttcgcgg
     1261 gtactgcact gatgtgtccg ccgacttcgc gcaggctgcc atctttgcca taggtagcat
     1321 cgccaggacc tacacggatc agtgtgtgca gattctaaca gagctgctgg ggcttcgaca
     1381 agagcacatt accacagtgg ttgtgcagac tttccgagac ctggtttggt tgtgtcctca
     1441 gtgtacagaa gctgtgtgtc aggccctgcc cggctgtgag gagagcattc aagatagcga
     1501 ggggaagcag gcacttattt ggctactcgg tgtccacggg aagagaatcc ccaacgctcc
     1561 ttatgtgttg gaagacttcg tagagaatgt gaagtcggag acatttccag ctgtcaagat
     1621 ggagctgctc acggctctgc tgcgcctttt cctctctcga cccgccgagt gccaggacat
     1681 gctgggccgt ttattgtact actgcataga ggaagaaaag gatatggcag tacgggaccg
     1741 aggtctcttc tactatcgcc tcctcttagc tggcattgat gaagtgaagc ggatcctacg
     1801 gagccctcaa tctgaccctt ctctcagact tttggaggat caggcagaaa gacctgtgaa
     1861 cagctgggcc tcggacttca acacactggt gccagtatat ggcaaagccc gctgggcaac
     1921 catctctaaa tgccagggag tagaacgtca tggcccagag ctccctaaca ctgcatcttt
     1981 tgccacatca ggacccctga ttcctgaaga gaacaaggag agggtccaag aactccctga
     2041 ttccagagcc ctcatgctag tccccaatca ccagcttact gctgagtgtt ttgagaaaac
     2101 ttggctgagc ctcaaagttg ctcatcagca agtgttcccg tggcagggag cagtccatcc
     2161 cgacaccctt cagatggccc tgcaagtcgt gaacatccag accatcgcga tgaacagggc
     2221 tggggctcag ccgtggaaag cttacctcag cgctcaggat gacactggct gtctgttcct
     2281 gacagaactg ctgttggagc ccgagaactt gcaaatgcag atctcagtaa aacaaaacaa
     2341 ggcgaggaca gagacactga acagttttat ttctgtatta gaaactgtga ttggaacaat
     2401 tggagacata aaatcataac agcttcttgc ctatcctgag tgagatgaat agctgtcaga
     2461 gttccttagt ttttcttatt gtagctgctt gtaagtccag ataatatcaa atgcaaagga
     2521 gaatgggaa
//
LOCUS       XM_032648810            2457 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X5, mRNA.
ACCESSION   XM_032648810
VERSION     XM_032648810.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2457
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762064"
     CDS             128..2347
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X1"
                     /protein_id="XP_032504701.1"
                     /db_xref="GeneID:116762064"
                     /translation="MPYLGSEDEVKDLKKALCNPHIQADRLRYRNVIQRVIRHMTQGS
                     DMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVR
                     GLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAVLGCAKMHTLHGDSEVDGAL
                     VNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEV
                     LNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKNFPHVQTDVLMQ
                     VKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVE
                     VLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGSIARTYTDQCVQILTELLGL
                     RQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQDSEGKQALIWLLGVHGKRI
                     PNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKD
                     MAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLEDQAERPVNSWASDFNTLVPV
                     YGKARWATISKCQGVERHGPELPNTASFATSGPLIPEENKERVQELPDSRALMLVPNH
                     QLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQVVNIQTIAMNRAGAQPWKAY
                     LSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLNSFISVLETVIGTIGDIKS"
     misc_feature    215..1693
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    383..466
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    494..577
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    602..682
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    719..793
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1985..2323
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 gcagctgctc tgcgtggtcc ccctggagga ggcgggactt ccgcagaaag gtccccacat
       61 cagggctaga aggagcccac gagttaccta gggatctctg ggaactgccc cgtgactgtt
      121 cgagaagatg ccgtacctgg gctccgagga cgaggtgaag gacctgaaga aggctctgtg
      181 taaccctcac attcaggctg ataggctgcg ctatcggaat gtcatccagc gagtgattag
      241 gcacatgact cagggctcag acatgtctgg tgttttcatg gaaatggtga aggccagtgc
      301 cactatagat attgttcaga agaagttggt ttatctctac atgtgtacct atgcccccct
      361 gaaaccagat ctggctctcc tggccatcaa tacactgtgc aaagactgtt cggaccccaa
      421 cccgatggtg cgagggttgg cactacggag catgtgtagc ctcaggttgc ctggtgtgca
      481 ggaatatctc caacagccag ttctcaacgg tctgcatgat aaggcttcat atgtcaggag
      541 ggtagcagtc cttggctgtg ccaagatgca tactcttcat ggagactctg aagtggatgg
      601 tgccctggta aacgaattat atagtttgct gcgtgaccag gatccaattg tggttgtgaa
      661 ctgcctgagg tctctggagg aaattttgaa acaggaagga ggtgttgtca tcaataagcc
      721 catcgcccac catctcttaa atcgaatgtc aaaactggac cagtggggcc aggctgaagt
      781 attgaacttt ctgctacgct accaaccccg cagtgaggag gagctgtttg acattctcaa
      841 cctgttggac agttttctca agagcagtag cccaggtgtg gtgatgggag ccaccaaact
      901 ctttctgatc ttggcaaaaa acttccccca tgtgcaaact gacgtgctca tgcaagtcaa
      961 gggaactttg ctggctgcct gttcttcaga gagccgcgag ctctgttttg ctgccctctg
     1021 ccatgtgcgc caggtcctgc acagtttgcc gggtcacttt agcagccact acaaaaagtt
     1081 tttttgctcc tactcggagc cccactacat caagctccag aaggtggagg tgctgtgtga
     1141 gctggtgaac gacgagaacg tgcagcaggt gctggaggag cttcgcgggt actgcactga
     1201 tgtgtccgcc gacttcgcgc aggctgccat ctttgccata ggtagcatcg ccaggaccta
     1261 cacggatcag tgtgtgcaga ttctaacaga gctgctgggg cttcgacaag agcacattac
     1321 cacagtggtt gtgcagactt tccgagacct ggtttggttg tgtcctcagt gtacagaagc
     1381 tgtgtgtcag gccctgcccg gctgtgagga gagcattcaa gatagcgagg ggaagcaggc
     1441 acttatttgg ctactcggtg tccacgggaa gagaatcccc aacgctcctt atgtgttgga
     1501 agacttcgta gagaatgtga agtcggagac atttccagct gtcaagatgg agctgctcac
     1561 ggctctgctg cgccttttcc tctctcgacc cgccgagtgc caggacatgc tgggccgttt
     1621 attgtactac tgcatagagg aagaaaagga tatggcagta cgggaccgag gtctcttcta
     1681 ctatcgcctc ctcttagctg gcattgatga agtgaagcgg atcctacgga gccctcaatc
     1741 tgacccttct ctcagacttt tggaggatca ggcagaaaga cctgtgaaca gctgggcctc
     1801 ggacttcaac acactggtgc cagtatatgg caaagcccgc tgggcaacca tctctaaatg
     1861 ccagggagta gaacgtcatg gcccagagct ccctaacact gcatcttttg ccacatcagg
     1921 acccctgatt cctgaagaga acaaggagag ggtccaagaa ctccctgatt ccagagccct
     1981 catgctagtc cccaatcacc agcttactgc tgagtgtttt gagaaaactt ggctgagcct
     2041 caaagttgct catcagcaag tgttcccgtg gcagggagca gtccatcccg acacccttca
     2101 gatggccctg caagtcgtga acatccagac catcgcgatg aacagggctg gggctcagcc
     2161 gtggaaagct tacctcagcg ctcaggatga cactggctgt ctgttcctga cagaactgct
     2221 gttggagccc gagaacttgc aaatgcagat ctcagtaaaa caaaacaagg cgaggacaga
     2281 gacactgaac agttttattt ctgtattaga aactgtgatt ggaacaattg gagacataaa
     2341 atcataacag cttcttgcct atcctgagtg agatgaatag ctgtcagagt tccttagttt
     2401 ttcttattgt agctgcttgt aagtccagat aatatcaaat gcaaaggaga atgggaa
//
LOCUS       XM_032648819            2621 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X6, mRNA.
ACCESSION   XM_032648819
VERSION     XM_032648819.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2621
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762064"
     CDS             292..2511
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X2"
                     /protein_id="XP_032504710.1"
                     /db_xref="GeneID:116762064"
                     /translation="MPYLGSEDEVKDLKKALCNPHIQADRLRYRNVIQRVIRHMTQGS
                     DMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVR
                     GLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAVLGCAKMHTLHGDSEVDGAL
                     VNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEV
                     LNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKNFPHVQTDVLMQ
                     VKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVE
                     VLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGSIARTYTDQCVQILTELLGL
                     RQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQDSEGKQALIWLLGVHGKRI
                     PNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKD
                     MAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLEDQAERPVNSWASDFNTLVPV
                     YGKARWATISKCQGVERHGPELPNTASFATSGPLIPEENKERVQELPDSRALMLVPNH
                     QLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQVVNIQTIAMNRAGAQPWKAY
                     LSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLNSFISVLETVIGTIGDIKS"
     misc_feature    379..1857
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    547..630
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    658..741
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    766..846
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    883..957
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    2149..2487
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 ggaggaggcg ggacttccgc agaaaggttg attgggcctt ttggtgacgg caaccgcgtg
       61 gaggcgaaag aaaggctgga actggagagg gaggggtcca cggactgttg gctgccgggc
      121 tggaagtcgg gccgagggcc tagaggttgc gggagagctc tgtgggcgga gcgaacgagc
      181 ctgcaggtcc ccggaaggat ccgcagagcc tagggtcccc acatcagggc tagaaggagc
      241 ccacgagtta cctagggatc tctgggaact gccccgtgac tgttcgagaa gatgccgtac
      301 ctgggctccg aggacgaggt gaaggacctg aagaaggctc tgtgtaaccc tcacattcag
      361 gctgataggc tgcgctatcg gaatgtcatc cagcgagtga ttaggcacat gactcagggc
      421 tcagacatgt ctggtgtttt catggaaatg gtgaaggcca gtgccactat agatattgtt
      481 cagaagaagt tggtttatct ctacatgtgt acctatgccc ccctgaaacc agatctggct
      541 ctcctggcca tcaatacact gtgcaaagac tgttcggacc ccaacccgat ggtgcgaggg
      601 ttggcactac ggagcatgtg tagcctcagg ttgcctggtg tgcaggaata tctccaacag
      661 ccagttctca acggtctgca tgataaggct tcatatgtca ggagggtagc agtccttggc
      721 tgtgccaaga tgcatactct tcatggagac tctgaagtgg atggtgccct ggtaaacgaa
      781 ttatatagtt tgctgcgtga ccaggatcca attgtggttg tgaactgcct gaggtctctg
      841 gaggaaattt tgaaacagga aggaggtgtt gtcatcaata agcccatcgc ccaccatctc
      901 ttaaatcgaa tgtcaaaact ggaccagtgg ggccaggctg aagtattgaa ctttctgcta
      961 cgctaccaac cccgcagtga ggaggagctg tttgacattc tcaacctgtt ggacagtttt
     1021 ctcaagagca gtagcccagg tgtggtgatg ggagccacca aactctttct gatcttggca
     1081 aaaaacttcc cccatgtgca aactgacgtg ctcatgcaag tcaagggaac tttgctggct
     1141 gcctgttctt cagagagccg cgagctctgt tttgctgccc tctgccatgt gcgccaggtc
     1201 ctgcacagtt tgccgggtca ctttagcagc cactacaaaa agtttttttg ctcctactcg
     1261 gagccccact acatcaagct ccagaaggtg gaggtgctgt gtgagctggt gaacgacgag
     1321 aacgtgcagc aggtgctgga ggagcttcgc gggtactgca ctgatgtgtc cgccgacttc
     1381 gcgcaggctg ccatctttgc cataggtagc atcgccagga cctacacgga tcagtgtgtg
     1441 cagattctaa cagagctgct ggggcttcga caagagcaca ttaccacagt ggttgtgcag
     1501 actttccgag acctggtttg gttgtgtcct cagtgtacag aagctgtgtg tcaggccctg
     1561 cccggctgtg aggagagcat tcaagatagc gaggggaagc aggcacttat ttggctactc
     1621 ggtgtccacg ggaagagaat ccccaacgct ccttatgtgt tggaagactt cgtagagaat
     1681 gtgaagtcgg agacatttcc agctgtcaag atggagctgc tcacggctct gctgcgcctt
     1741 ttcctctctc gacccgccga gtgccaggac atgctgggcc gtttattgta ctactgcata
     1801 gaggaagaaa aggatatggc agtacgggac cgaggtctct tctactatcg cctcctctta
     1861 gctggcattg atgaagtgaa gcggatccta cggagccctc aatctgaccc ttctctcaga
     1921 cttttggagg atcaggcaga aagacctgtg aacagctggg cctcggactt caacacactg
     1981 gtgccagtat atggcaaagc ccgctgggca accatctcta aatgccaggg agtagaacgt
     2041 catggcccag agctccctaa cactgcatct tttgccacat caggacccct gattcctgaa
     2101 gagaacaagg agagggtcca agaactccct gattccagag ccctcatgct agtccccaat
     2161 caccagctta ctgctgagtg ttttgagaaa acttggctga gcctcaaagt tgctcatcag
     2221 caagtgttcc cgtggcaggg agcagtccat cccgacaccc ttcagatggc cctgcaagtc
     2281 gtgaacatcc agaccatcgc gatgaacagg gctggggctc agccgtggaa agcttacctc
     2341 agcgctcagg atgacactgg ctgtctgttc ctgacagaac tgctgttgga gcccgagaac
     2401 ttgcaaatgc agatctcagt aaaacaaaac aaggcgagga cagagacact gaacagtttt
     2461 atttctgtat tagaaactgt gattggaaca attggagaca taaaatcata acagcttctt
     2521 gcctatcctg agtgagatga atagctgtca gagttcctta gtttttctta ttgtagctgc
     2581 ttgtaagtcc agataatatc aaatgcaaag gagaatggga a
//
LOCUS       XM_032648829            2530 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X7, mRNA.
ACCESSION   XM_032648829
VERSION     XM_032648829.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2530
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762064"
     CDS             201..2420
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X2"
                     /protein_id="XP_032504720.1"
                     /db_xref="GeneID:116762064"
                     /translation="MPYLGSEDEVKDLKKALCNPHIQADRLRYRNVIQRVIRHMTQGS
                     DMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVR
                     GLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAVLGCAKMHTLHGDSEVDGAL
                     VNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEV
                     LNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKNFPHVQTDVLMQ
                     VKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVE
                     VLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGSIARTYTDQCVQILTELLGL
                     RQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQDSEGKQALIWLLGVHGKRI
                     PNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKD
                     MAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLEDQAERPVNSWASDFNTLVPV
                     YGKARWATISKCQGVERHGPELPNTASFATSGPLIPEENKERVQELPDSRALMLVPNH
                     QLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQVVNIQTIAMNRAGAQPWKAY
                     LSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLNSFISVLETVIGTIGDIKS"
     misc_feature    288..1766
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    456..539
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    567..650
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    675..755
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    792..866
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    2058..2396
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 tctccctggc cccaactcta tgactccaag gctgtgacag atcggaagtc cccacccagc
       61 tgccgggacc aactctcgga ggccgactcc agccgcccat acctgtcggt gacggtgcaa
      121 gaggtcccca catcagggct agaaggagcc cacgagttac ctagggatct ctgggaactg
      181 ccccgtgact gttcgagaag atgccgtacc tgggctccga ggacgaggtg aaggacctga
      241 agaaggctct gtgtaaccct cacattcagg ctgataggct gcgctatcgg aatgtcatcc
      301 agcgagtgat taggcacatg actcagggct cagacatgtc tggtgttttc atggaaatgg
      361 tgaaggccag tgccactata gatattgttc agaagaagtt ggtttatctc tacatgtgta
      421 cctatgcccc cctgaaacca gatctggctc tcctggccat caatacactg tgcaaagact
      481 gttcggaccc caacccgatg gtgcgagggt tggcactacg gagcatgtgt agcctcaggt
      541 tgcctggtgt gcaggaatat ctccaacagc cagttctcaa cggtctgcat gataaggctt
      601 catatgtcag gagggtagca gtccttggct gtgccaagat gcatactctt catggagact
      661 ctgaagtgga tggtgccctg gtaaacgaat tatatagttt gctgcgtgac caggatccaa
      721 ttgtggttgt gaactgcctg aggtctctgg aggaaatttt gaaacaggaa ggaggtgttg
      781 tcatcaataa gcccatcgcc caccatctct taaatcgaat gtcaaaactg gaccagtggg
      841 gccaggctga agtattgaac tttctgctac gctaccaacc ccgcagtgag gaggagctgt
      901 ttgacattct caacctgttg gacagttttc tcaagagcag tagcccaggt gtggtgatgg
      961 gagccaccaa actctttctg atcttggcaa aaaacttccc ccatgtgcaa actgacgtgc
     1021 tcatgcaagt caagggaact ttgctggctg cctgttcttc agagagccgc gagctctgtt
     1081 ttgctgccct ctgccatgtg cgccaggtcc tgcacagttt gccgggtcac tttagcagcc
     1141 actacaaaaa gtttttttgc tcctactcgg agccccacta catcaagctc cagaaggtgg
     1201 aggtgctgtg tgagctggtg aacgacgaga acgtgcagca ggtgctggag gagcttcgcg
     1261 ggtactgcac tgatgtgtcc gccgacttcg cgcaggctgc catctttgcc ataggtagca
     1321 tcgccaggac ctacacggat cagtgtgtgc agattctaac agagctgctg gggcttcgac
     1381 aagagcacat taccacagtg gttgtgcaga ctttccgaga cctggtttgg ttgtgtcctc
     1441 agtgtacaga agctgtgtgt caggccctgc ccggctgtga ggagagcatt caagatagcg
     1501 aggggaagca ggcacttatt tggctactcg gtgtccacgg gaagagaatc cccaacgctc
     1561 cttatgtgtt ggaagacttc gtagagaatg tgaagtcgga gacatttcca gctgtcaaga
     1621 tggagctgct cacggctctg ctgcgccttt tcctctctcg acccgccgag tgccaggaca
     1681 tgctgggccg tttattgtac tactgcatag aggaagaaaa ggatatggca gtacgggacc
     1741 gaggtctctt ctactatcgc ctcctcttag ctggcattga tgaagtgaag cggatcctac
     1801 ggagccctca atctgaccct tctctcagac ttttggagga tcaggcagaa agacctgtga
     1861 acagctgggc ctcggacttc aacacactgg tgccagtata tggcaaagcc cgctgggcaa
     1921 ccatctctaa atgccaggga gtagaacgtc atggcccaga gctccctaac actgcatctt
     1981 ttgccacatc aggacccctg attcctgaag agaacaagga gagggtccaa gaactccctg
     2041 attccagagc cctcatgcta gtccccaatc accagcttac tgctgagtgt tttgagaaaa
     2101 cttggctgag cctcaaagtt gctcatcagc aagtgttccc gtggcaggga gcagtccatc
     2161 ccgacaccct tcagatggcc ctgcaagtcg tgaacatcca gaccatcgcg atgaacaggg
     2221 ctggggctca gccgtggaaa gcttacctca gcgctcagga tgacactggc tgtctgttcc
     2281 tgacagaact gctgttggag cccgagaact tgcaaatgca gatctcagta aaacaaaaca
     2341 aggcgaggac agagacactg aacagtttta tttctgtatt agaaactgtg attggaacaa
     2401 ttggagacat aaaatcataa cagcttcttg cctatcctga gtgagatgaa tagctgtcag
     2461 agttccttag tttttcttat tgtagctgct tgtaagtcca gataatatca aatgcaaagg
     2521 agaatgggaa
//
LOCUS       XM_032648837            2321 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X8, mRNA.
ACCESSION   XM_032648837
VERSION     XM_032648837.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2321
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762064"
     CDS             109..2211
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X3"
                     /protein_id="XP_032504728.1"
                     /db_xref="GeneID:116762064"
                     /translation="MTQGSDMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLA
                     LLAINTLCKDCSDPNPMVRGLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAV
                     LGCAKMHTLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPI
                     AHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATK
                     LFLILAKNFPHVQTDVLMQVKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHY
                     KKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGS
                     IARTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQ
                     DSEGKQALIWLLGVHGKRIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPA
                     ECQDMLGRLLYYCIEEEKDMAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLED
                     QAERPVNSWASDFNTLVPVYGKARWATISKCQGVERHGPELPNTASFATSGPLIPEEN
                     KERVQELPDSRALMLVPNHQLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQV
                     VNIQTIAMNRAGAQPWKAYLSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLN
                     SFISVLETVIGTIGDIKS"
     misc_feature    109..1557
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    247..330
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    358..441
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    466..546
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    583..657
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1849..2187
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 gtccccacat cagggctaga aggagcccac gagttaccta gggatctctg ggaactgccc
       61 cgtgactgtt cgagaagatg ccgtacctgg gctccgagga cgaggcacat gactcagggc
      121 tcagacatgt ctggtgtttt catggaaatg gtgaaggcca gtgccactat agatattgtt
      181 cagaagaagt tggtttatct ctacatgtgt acctatgccc ccctgaaacc agatctggct
      241 ctcctggcca tcaatacact gtgcaaagac tgttcggacc ccaacccgat ggtgcgaggg
      301 ttggcactac ggagcatgtg tagcctcagg ttgcctggtg tgcaggaata tctccaacag
      361 ccagttctca acggtctgca tgataaggct tcatatgtca ggagggtagc agtccttggc
      421 tgtgccaaga tgcatactct tcatggagac tctgaagtgg atggtgccct ggtaaacgaa
      481 ttatatagtt tgctgcgtga ccaggatcca attgtggttg tgaactgcct gaggtctctg
      541 gaggaaattt tgaaacagga aggaggtgtt gtcatcaata agcccatcgc ccaccatctc
      601 ttaaatcgaa tgtcaaaact ggaccagtgg ggccaggctg aagtattgaa ctttctgcta
      661 cgctaccaac cccgcagtga ggaggagctg tttgacattc tcaacctgtt ggacagtttt
      721 ctcaagagca gtagcccagg tgtggtgatg ggagccacca aactctttct gatcttggca
      781 aaaaacttcc cccatgtgca aactgacgtg ctcatgcaag tcaagggaac tttgctggct
      841 gcctgttctt cagagagccg cgagctctgt tttgctgccc tctgccatgt gcgccaggtc
      901 ctgcacagtt tgccgggtca ctttagcagc cactacaaaa agtttttttg ctcctactcg
      961 gagccccact acatcaagct ccagaaggtg gaggtgctgt gtgagctggt gaacgacgag
     1021 aacgtgcagc aggtgctgga ggagcttcgc gggtactgca ctgatgtgtc cgccgacttc
     1081 gcgcaggctg ccatctttgc cataggtagc atcgccagga cctacacgga tcagtgtgtg
     1141 cagattctaa cagagctgct ggggcttcga caagagcaca ttaccacagt ggttgtgcag
     1201 actttccgag acctggtttg gttgtgtcct cagtgtacag aagctgtgtg tcaggccctg
     1261 cccggctgtg aggagagcat tcaagatagc gaggggaagc aggcacttat ttggctactc
     1321 ggtgtccacg ggaagagaat ccccaacgct ccttatgtgt tggaagactt cgtagagaat
     1381 gtgaagtcgg agacatttcc agctgtcaag atggagctgc tcacggctct gctgcgcctt
     1441 ttcctctctc gacccgccga gtgccaggac atgctgggcc gtttattgta ctactgcata
     1501 gaggaagaaa aggatatggc agtacgggac cgaggtctct tctactatcg cctcctctta
     1561 gctggcattg atgaagtgaa gcggatccta cggagccctc aatctgaccc ttctctcaga
     1621 cttttggagg atcaggcaga aagacctgtg aacagctggg cctcggactt caacacactg
     1681 gtgccagtat atggcaaagc ccgctgggca accatctcta aatgccaggg agtagaacgt
     1741 catggcccag agctccctaa cactgcatct tttgccacat caggacccct gattcctgaa
     1801 gagaacaagg agagggtcca agaactccct gattccagag ccctcatgct agtccccaat
     1861 caccagctta ctgctgagtg ttttgagaaa acttggctga gcctcaaagt tgctcatcag
     1921 caagtgttcc cgtggcaggg agcagtccat cccgacaccc ttcagatggc cctgcaagtc
     1981 gtgaacatcc agaccatcgc gatgaacagg gctggggctc agccgtggaa agcttacctc
     2041 agcgctcagg atgacactgg ctgtctgttc ctgacagaac tgctgttgga gcccgagaac
     2101 ttgcaaatgc agatctcagt aaaacaaaac aaggcgagga cagagacact gaacagtttt
     2161 atttctgtat tagaaactgt gattggaaca attggagaca taaaatcata acagcttctt
     2221 gcctatcctg agtgagatga atagctgtca gagttcctta gtttttctta ttgtagctgc
     2281 ttgtaagtcc agataatatc aaatgcaaag gagaatggga a
//
LOCUS       XM_032648847            2534 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X9, mRNA.
ACCESSION   XM_032648847
VERSION     XM_032648847.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2534
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762064"
     CDS             322..2424
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X3"
                     /protein_id="XP_032504738.1"
                     /db_xref="GeneID:116762064"
                     /translation="MTQGSDMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLA
                     LLAINTLCKDCSDPNPMVRGLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAV
                     LGCAKMHTLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPI
                     AHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATK
                     LFLILAKNFPHVQTDVLMQVKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHY
                     KKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGS
                     IARTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQ
                     DSEGKQALIWLLGVHGKRIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPA
                     ECQDMLGRLLYYCIEEEKDMAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLED
                     QAERPVNSWASDFNTLVPVYGKARWATISKCQGVERHGPELPNTASFATSGPLIPEEN
                     KERVQELPDSRALMLVPNHQLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQV
                     VNIQTIAMNRAGAQPWKAYLSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLN
                     SFISVLETVIGTIGDIKS"
     misc_feature    322..1770
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    460..543
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    571..654
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    679..759
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    796..870
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    2062..2400
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 cgagaagatg ccgtacctgg gctccgagga cgaggtgaag gacctgaaga aggctctgtg
       61 taaccctcac attcaggctg ataggctgcg ctatcggaat gtcatccagc gagtgattag
      121 acccacagat cctactgcct gcttggcatt tccacctgga tatttcttca aagacatgca
      181 aaatagtacc tacatccttc cgccctcccc aaacccgctc ttccacttgt atttgtgttg
      241 atgaacgtct tcacccagct gagcaaatgt gggagtcagt cttggtgaca cctgattttc
      301 actgttcaag tcagatggca catgactcag ggctcagaca tgtctggtgt tttcatggaa
      361 atggtgaagg ccagtgccac tatagatatt gttcagaaga agttggttta tctctacatg
      421 tgtacctatg cccccctgaa accagatctg gctctcctgg ccatcaatac actgtgcaaa
      481 gactgttcgg accccaaccc gatggtgcga gggttggcac tacggagcat gtgtagcctc
      541 aggttgcctg gtgtgcagga atatctccaa cagccagttc tcaacggtct gcatgataag
      601 gcttcatatg tcaggagggt agcagtcctt ggctgtgcca agatgcatac tcttcatgga
      661 gactctgaag tggatggtgc cctggtaaac gaattatata gtttgctgcg tgaccaggat
      721 ccaattgtgg ttgtgaactg cctgaggtct ctggaggaaa ttttgaaaca ggaaggaggt
      781 gttgtcatca ataagcccat cgcccaccat ctcttaaatc gaatgtcaaa actggaccag
      841 tggggccagg ctgaagtatt gaactttctg ctacgctacc aaccccgcag tgaggaggag
      901 ctgtttgaca ttctcaacct gttggacagt tttctcaaga gcagtagccc aggtgtggtg
      961 atgggagcca ccaaactctt tctgatcttg gcaaaaaact tcccccatgt gcaaactgac
     1021 gtgctcatgc aagtcaaggg aactttgctg gctgcctgtt cttcagagag ccgcgagctc
     1081 tgttttgctg ccctctgcca tgtgcgccag gtcctgcaca gtttgccggg tcactttagc
     1141 agccactaca aaaagttttt ttgctcctac tcggagcccc actacatcaa gctccagaag
     1201 gtggaggtgc tgtgtgagct ggtgaacgac gagaacgtgc agcaggtgct ggaggagctt
     1261 cgcgggtact gcactgatgt gtccgccgac ttcgcgcagg ctgccatctt tgccataggt
     1321 agcatcgcca ggacctacac ggatcagtgt gtgcagattc taacagagct gctggggctt
     1381 cgacaagagc acattaccac agtggttgtg cagactttcc gagacctggt ttggttgtgt
     1441 cctcagtgta cagaagctgt gtgtcaggcc ctgcccggct gtgaggagag cattcaagat
     1501 agcgagggga agcaggcact tatttggcta ctcggtgtcc acgggaagag aatccccaac
     1561 gctccttatg tgttggaaga cttcgtagag aatgtgaagt cggagacatt tccagctgtc
     1621 aagatggagc tgctcacggc tctgctgcgc cttttcctct ctcgacccgc cgagtgccag
     1681 gacatgctgg gccgtttatt gtactactgc atagaggaag aaaaggatat ggcagtacgg
     1741 gaccgaggtc tcttctacta tcgcctcctc ttagctggca ttgatgaagt gaagcggatc
     1801 ctacggagcc ctcaatctga cccttctctc agacttttgg aggatcaggc agaaagacct
     1861 gtgaacagct gggcctcgga cttcaacaca ctggtgccag tatatggcaa agcccgctgg
     1921 gcaaccatct ctaaatgcca gggagtagaa cgtcatggcc cagagctccc taacactgca
     1981 tcttttgcca catcaggacc cctgattcct gaagagaaca aggagagggt ccaagaactc
     2041 cctgattcca gagccctcat gctagtcccc aatcaccagc ttactgctga gtgttttgag
     2101 aaaacttggc tgagcctcaa agttgctcat cagcaagtgt tcccgtggca gggagcagtc
     2161 catcccgaca cccttcagat ggccctgcaa gtcgtgaaca tccagaccat cgcgatgaac
     2221 agggctgggg ctcagccgtg gaaagcttac ctcagcgctc aggatgacac tggctgtctg
     2281 ttcctgacag aactgctgtt ggagcccgag aacttgcaaa tgcagatctc agtaaaacaa
     2341 aacaaggcga ggacagagac actgaacagt tttatttctg tattagaaac tgtgattgga
     2401 acaattggag acataaaatc ataacagctt cttgcctatc ctgagtgaga tgaatagctg
     2461 tcagagttcc ttagtttttc ttattgtagc tgcttgtaag tccagataat atcaaatgca
     2521 aaggagaatg ggaa
//
LOCUS       XM_032648856            2906 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 4 subunit
            beta 1 (AP4B1), transcript variant X10, mRNA.
ACCESSION   XM_032648856
VERSION     XM_032648856.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2906
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2906
                     /gene="AP4B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 96% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762064"
     CDS             694..2796
                     /gene="AP4B1"
                     /codon_start=1
                     /product="AP-4 complex subunit beta-1 isoform X4"
                     /protein_id="XP_032504747.1"
                     /db_xref="GeneID:116762064"
                     /translation="MTQGSDMSGVFMEMVKASATIDIVQKKLVYLYMCTYAPLKPDLA
                     LLAINTLCKDCSDPNPMVRGLALRSMCSLRLPGVQEYLQQPVLNGLHDKASYVRRVAV
                     LGCAKMHTLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPI
                     AHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATK
                     LFLILAKNFPHVQTDVLMQVKGTLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHY
                     KKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGS
                     IARTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEESIQ
                     DSEGKQALIWLLGVHGKRIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPA
                     ECQDMLGRLLYYCIEEEKDMAVRDRGLFYYRLLLAGIDEVKRILRSPQSDPSLRLLED
                     QAERPVNSWASDFNTLVPVYGKARWATISKCQGVERHGPELPNTASFATSGPLIPEEN
                     KERVQELPDSRALMLVPNHQLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQV
                     VNIQTIAMNRAGAQPWKAYLSAQDDTGCLFLTELLLEPENLQMQISVKQNKARTETLN
                     SFISVLETVIGTIGDIKS"
     misc_feature    694..2142
                     /gene="AP4B1"
                     /note="Adaptin N terminal region; Region: Adaptin_N;
                     pfam01602"
                     /db_xref="CDD:396262"
     misc_feature    832..915
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    943..1026
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1051..1131
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1168..1242
                     /gene="AP4B1"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    2434..2772
                     /gene="AP4B1"
                     /note="Beta2-adaptin appendage, C-terminal sub-domain;
                     Region: B2-adapt-app_C; smart01020"
                     /db_xref="CDD:198088"
ORIGIN      
        1 gggcctcgcc agggagcgag agggttgaag ttcgagtgtg gtccccacat cagggctaga
       61 aggagcccac gagttaccta gggatctctg ggaactgccc cgtgactgtt cgagaagatg
      121 ccgtacctgg gctccgagga cgaggtgaag gacctgaaga aggctctgtg taaccctcac
      181 attcaggctg ataggctgcg ctatcggaat gtcatccagc gagtgattag gtatcaccta
      241 acgctctaac tcccccattg ccatccccat cagggctctc tacccctggc cgcttagaaa
      301 gattaagtga acttgcaccc atggcagttg tatgatttgg tcttcctgct tctctggact
      361 gccgtctaag tctcccttgt gggacatatt ttgcttcttt tactcagctg ggtggtttca
      421 tccatgtctt gatcttgtac tgctgacttc cagatctatg tctagcacag acctcctttt
      481 ttatatcgtc agacccacag atcctactgc ctgcttggca tttccacctg gatatttctt
      541 caaagacatg caaaatagta cctacatcct tccgccctcc ccaaacccgc tcttccactt
      601 gtatttgtgt tgatgaacgt cttcacccag ctgagcaaat gtgggagtca gtcttggtga
      661 cacctgattt tcactgttca agtcagatgg cacatgactc agggctcaga catgtctggt
      721 gttttcatgg aaatggtgaa ggccagtgcc actatagata ttgttcagaa gaagttggtt
      781 tatctctaca tgtgtaccta tgcccccctg aaaccagatc tggctctcct ggccatcaat
      841 acactgtgca aagactgttc ggaccccaac ccgatggtgc gagggttggc actacggagc
      901 atgtgtagcc tcaggttgcc tggtgtgcag gaatatctcc aacagccagt tctcaacggt
      961 ctgcatgata aggcttcata tgtcaggagg gtagcagtcc ttggctgtgc caagatgcat
     1021 actcttcatg gagactctga agtggatggt gccctggtaa acgaattata tagtttgctg
     1081 cgtgaccagg atccaattgt ggttgtgaac tgcctgaggt ctctggagga aattttgaaa
     1141 caggaaggag gtgttgtcat caataagccc atcgcccacc atctcttaaa tcgaatgtca
     1201 aaactggacc agtggggcca ggctgaagta ttgaactttc tgctacgcta ccaaccccgc
     1261 agtgaggagg agctgtttga cattctcaac ctgttggaca gttttctcaa gagcagtagc
     1321 ccaggtgtgg tgatgggagc caccaaactc tttctgatct tggcaaaaaa cttcccccat
     1381 gtgcaaactg acgtgctcat gcaagtcaag ggaactttgc tggctgcctg ttcttcagag
     1441 agccgcgagc tctgttttgc tgccctctgc catgtgcgcc aggtcctgca cagtttgccg
     1501 ggtcacttta gcagccacta caaaaagttt ttttgctcct actcggagcc ccactacatc
     1561 aagctccaga aggtggaggt gctgtgtgag ctggtgaacg acgagaacgt gcagcaggtg
     1621 ctggaggagc ttcgcgggta ctgcactgat gtgtccgccg acttcgcgca ggctgccatc
     1681 tttgccatag gtagcatcgc caggacctac acggatcagt gtgtgcagat tctaacagag
     1741 ctgctggggc ttcgacaaga gcacattacc acagtggttg tgcagacttt ccgagacctg
     1801 gtttggttgt gtcctcagtg tacagaagct gtgtgtcagg ccctgcccgg ctgtgaggag
     1861 agcattcaag atagcgaggg gaagcaggca cttatttggc tactcggtgt ccacgggaag
     1921 agaatcccca acgctcctta tgtgttggaa gacttcgtag agaatgtgaa gtcggagaca
     1981 tttccagctg tcaagatgga gctgctcacg gctctgctgc gccttttcct ctctcgaccc
     2041 gccgagtgcc aggacatgct gggccgttta ttgtactact gcatagagga agaaaaggat
     2101 atggcagtac gggaccgagg tctcttctac tatcgcctcc tcttagctgg cattgatgaa
     2161 gtgaagcgga tcctacggag ccctcaatct gacccttctc tcagactttt ggaggatcag
     2221 gcagaaagac ctgtgaacag ctgggcctcg gacttcaaca cactggtgcc agtatatggc
     2281 aaagcccgct gggcaaccat ctctaaatgc cagggagtag aacgtcatgg cccagagctc
     2341 cctaacactg catcttttgc cacatcagga cccctgattc ctgaagagaa caaggagagg
     2401 gtccaagaac tccctgattc cagagccctc atgctagtcc ccaatcacca gcttactgct
     2461 gagtgttttg agaaaacttg gctgagcctc aaagttgctc atcagcaagt gttcccgtgg
     2521 cagggagcag tccatcccga cacccttcag atggccctgc aagtcgtgaa catccagacc
     2581 atcgcgatga acagggctgg ggctcagccg tggaaagctt acctcagcgc tcaggatgac
     2641 actggctgtc tgttcctgac agaactgctg ttggagcccg agaacttgca aatgcagatc
     2701 tcagtaaaac aaaacaaggc gaggacagag acactgaaca gttttatttc tgtattagaa
     2761 actgtgattg gaacaattgg agacataaaa tcataacagc ttcttgccta tcctgagtga
     2821 gatgaatagc tgtcagagtt ccttagtttt tcttattgta gctgcttgta agtccagata
     2881 atatcaaatg caaaggagaa tgggaa
//
LOCUS       XM_032648869            4080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA cross-link repair 1B (DCLRE1B), mRNA.
ACCESSION   XM_032648869
VERSION     XM_032648869.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4080
                     /gene="DCLRE1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 7
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762106"
     CDS             220..1839
                     /gene="DCLRE1B"
                     /codon_start=1
                     /product="5' exonuclease Apollo"
                     /protein_id="XP_032504760.1"
                     /db_xref="GeneID:116762106"
                     /translation="MNGVLIPQTPIAVDFWSLRRAGSARLFFLSHMHSDHTVGLSSTW
                     TRPLYCSPITAYLLHRHRQVSKQWIRALEVGESHVLPLDEVGRETMTVTLIDANHCPG
                     SVMFLFEGYFGTILYTGDFRYTPSMLKEPALRLGKQIHTLYLDNTNCNPALVLPSQEE
                     AARQIVELIRKHPQHNIKIGLYSLGKESLLEQLALEFRTWVVLSPRRLELVQLLGLAD
                     VFTVEEKAGRIHAVDHMEICHSAMLRWNQTHPTIAILPTSRKIYRSHPDIHIIPYSDH
                     SSYPELRAFVEALRPCQVVPIVRRQPCRDYFQDSLSPRLSVPLIPDSVQQYMSSSSRN
                     PSFLWLLLERKLKRLRTQGVVFESLEENADHSQADRDLKKTKNENLSGELEKQPSHHP
                     LKIKKQPFLDIRNKEWEGAVPSSESQKMVTVLTAPSGFSVHLGSTDKEFSSPETGEEI
                     SVGPYLVPRGDNAGSAATGNPRAWMGQDSPQSHSSKAAPLLAPEYRGLAVKYLLTPVN
                     FLQVGFSSRGFDQQAEKYHQLLLKYRQESTE"
     misc_feature    235..672
                     /gene="DCLRE1B"
                     /note="SNM1A, artemis/SNM1C, yeast Pso2p, and related
                     proteins; MBL-fold metallo-hydrolase domain; Region:
                     SNM1A-1C-like_MBL-fold; cd16273"
                     /db_xref="CDD:293831"
     misc_feature    order(310..312,316..318,322..327,514..519,577..579,
                     652..654)
                     /gene="DCLRE1B"
                     /note="putative active site [active]"
                     /db_xref="CDD:293831"
     misc_feature    865..1113
                     /gene="DCLRE1B"
                     /note="DNA repair metallo-beta-lactamase; Region: DRMBL;
                     pfam07522"
                     /db_xref="CDD:429512"
     misc_feature    1699..1800
                     /gene="DCLRE1B"
                     /note="TRF2-binding region of apollo and similar proteins;
                     Region: apollo_TRF2_binding; cd11662"
                     /db_xref="CDD:212560"
     misc_feature    order(1705..1707,1711..1743)
                     /gene="DCLRE1B"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212560"
ORIGIN      
        1 ttctgtggtt tgcgattcca cccccagact cccacagcac ggtcacttcc ttctttctgc
       61 ccagtctagt cactcattcc ccactgagct ggctttcctt acggcctctg gccctgttct
      121 tgccccagca tgactttttt cagggcgccg ttgtaggagc ctcccgcagg agctctgttc
      181 ccatgaagat cccactggtg actctccaac cccgccacca tgaacggggt cttgatccct
      241 caaacgccca tcgctgtgga cttttggagc ctgcgccggg ctggctccgc ccggctcttc
      301 ttcttgtccc acatgcactc ggaccacacc gtgggtctct ctagcacctg gacccggccc
      361 ctctactgct ccccaatcac cgcttacctc ttgcaccgtc accgacaggt atctaagcag
      421 tggatccgag ccctggaggt tggtgagagc catgtcctgc ctctagatga agttgggcga
      481 gagaccatga ctgtaaccct catcgatgcc aatcactgcc ctggctctgt catgtttctg
      541 tttgaaggat actttggaac catcctctac acaggggatt ttcggtatac accgtccatg
      601 ctgaaggagc cagccctgag actggggaaa cagatccata ccttatacct agacaacacc
      661 aattgcaacc cagccctggt tcttccttcc caagaagaag ctgcccgcca gattgttgag
      721 ctcattcgaa agcacccaca acataacata aagattggac tctatagcct ggggaaagag
      781 tcactgctgg agcagctggc cctggagttt cggacctggg tggtattgag tcctcggcgc
      841 ctggagttgg tgcagctgct gggcctggca gatgtgttca cagtggagga gaaggctggc
      901 cgcatccatg ccgtggacca catggagatc tgccattcgg ctatgctgcg ttggaaccag
      961 acccacccta ccattgctat cctccccacc agccggaaaa tctaccgttc ccaccccgat
     1021 atccacatca tcccttactc tgaccattcc tcctaccctg agctccgtgc ctttgtcgaa
     1081 gcactgaggc cttgccaggt ggtgcccatt gtcaggcgac aaccctgtag ggactacttt
     1141 caggacagcc tgagccccag gctctctgtg cctctgattc cagactctgt acagcaatac
     1201 atgagttcct cctctagaaa tccaagtttt ctctggctat tgttagaaag gaagctaaag
     1261 agactgagaa cccagggtgt cgtgtttgaa tcccttgagg aaaatgctga tcactctcaa
     1321 gctgacaggg acttgaagaa gaccaagaat gagaaccttt ctggggagct tgagaagcag
     1381 ccctcccacc atcctttgaa gatcaagaag cagccgttcc tggacatccg caacaaagaa
     1441 tgggagggtg cagtcccttc ctccgagtcc cagaagatgg tgactgtatt gactgcccct
     1501 tcgggttttt cagtgcactt agggtctaca gataaagaat tttcctctcc ggaaactggg
     1561 gaggaaatca gtgtagggcc ctacttggta cccaggggag acaatgcggg ctcagcagcc
     1621 acagggaacc cgagagcctg gatgggccag gattctcccc agtctcacag cagcaaggct
     1681 gcccctcttc tggctcctga gtacaggggc ctggcagtca aataccttct gactccagtg
     1741 aactttctcc aggtagggtt ctcttccagg ggctttgacc agcaagcgga aaaataccat
     1801 caactcttgc tcaagtacag acaggagagt acagaatgac aaccttgttt gatccaacat
     1861 tgcacttttt ttttaaattc atcaagagtt gtttattttc aaagttagca ctctttgtat
     1921 ttctaccact aacaaatggg cagtgccaca tcaacacttc actttttttt ttttttttgt
     1981 ggtatgtggg cctctcactg ttgtggcctc tcctgttgcg gagcacaggc tccggacgcg
     2041 caggctcaac ggccatggct cacgggccca gccgttccgc ggcatgtggg atcttcctgg
     2101 accgggcacg aacccatgtc ccctactttg gcaggcagac tctcaaccac tgcgccacca
     2161 gggaagccca acactgcact tttgaagata gtggctgatg gcttacttgg ggccttactt
     2221 ttctgtggta catgcccgcc ctgtaacaag acttctcaaa gcgtgttcat tggaatccta
     2281 gtgtctatgg aatccttagt tctataattg acttgtgttt aagaaacact ttacattata
     2341 acccctttac agtatatgtg agcacattaa atgttctggg aagtcctgca gtaatttaat
     2401 ctgtttaact ttgtttaacc cagtatttct ccaaactttt ttttttttgg ctgtgtggca
     2461 tgcgggatct tagttccctg atcagggatc gaacccgcgc cccctgcagt ggaagcagag
     2521 tcctaaccac tctgcagact ttgtgaacat gcagtcctct tgtgtggctg cagaaagaga
     2581 tagagtctga tcaaaaagga ccagtttatt cccaatgttt tgtgtgtcat gtgtcattcc
     2641 ccatgtcccc ttctgtctct tcctagataa aagtccctag gtagttctgt tttttaattt
     2701 aggaactgtg gtgcaggagg ataaagtgac ccaggcagca tgttccaatc ctgaaggtca
     2761 ctgatttgct gtgaccccat ccaagtcact tcctgtctct gcctctggga gggaacagga
     2821 agtgatgaag atccttgaaa aactggagaa aatttccacc tctgcctccg tgagagtttg
     2881 cagttagtgt ccctgaggac ctacctggaa gacagccagc ttggggactg ggcacccctc
     2941 atcaaggcag tatctggaac ccagccaaac attaggctta gggtaagatg ggcctcccag
     3001 ctgcctagag gccctgacta tttggctgaa ataaggttac aaaatatcaa atgtgctgcc
     3061 agatagtctt gattgttcac acagctggga tatttgctgc ccccctccac ccagtatccc
     3121 ccccttccat ccttgggttg agtagggagc tggaggacat agactgtttg tttcagtaac
     3181 cagggcagag acgaaggagc cagctggtgg aaggggtgag ggtgtgcagt tctgccctga
     3241 ccttctgctc acagcctgac aaaatgccaa accaataagc aggacagcag ataccacagt
     3301 cacagggggc acaggcatgt ggagctgggc acatggataa aaactgtttc acaatggagc
     3361 ttcaagcctt cacaatgaag aagcctctga ttcttgtcca gggggccgga aattgtctac
     3421 ttctggagga agatatgaag agtttagaaa gcaaaataag gcctttctct tgggcaagct
     3481 gtatacagct ctgttttgtc agtgaccttc actgtaagcc tcccatgggc ccactaggag
     3541 ccatagcagg tgaggcatgt ggggtagcag gggacatggg cactgtcctg ggcttgaatc
     3601 cagggttcct gggcaaatag agatatcagg cttccatagc agagcctcag tttctcatct
     3661 gtaaaccagg gactctcctg attgctttgg aggttagaga attggtaaaa ttcctagctc
     3721 agtgcctatc acatgatgga tattttaaat attggttctc tcagcctctg gttctttaaa
     3781 aaaaaattat tccctatata aaataagaaa ctttggaagt catacaaaat ataaagaaaa
     3841 aatcagaatt cctccatgta gatcaattgt tttcttctag tctttttctg tgcatgtaaa
     3901 tatattaaat atataatttt ttttccaaat tggggtaata ctgtatatag ttttatatcc
     3961 tgcattttac tcttaatatt ttaagcattt tctcatatca ttaaatatta ttcaaaatgt
     4021 cattttaata gttgtataat accctatcat atgggtatac cttaattaaa actatttgtt
//
LOCUS       XM_032648879            6366 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and arginine rich end leucine
            rich repeat protein (PRELP), transcript variant X1, mRNA.
ACCESSION   XM_032648879
VERSION     XM_032648879.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6366
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6366
                     /gene="PRELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 33 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762115"
     CDS             187..1359
                     /gene="PRELP"
                     /codon_start=1
                     /product="prolargin isoform X1"
                     /protein_id="XP_032504770.1"
                     /db_xref="GeneID:116762115"
                     /translation="MRSSLCWLLPLLLILASEVQGQPTRRPRPRPRLQPRPRLRPTPS
                     FPQPHEPLEPTDLPPPLPPGPPSIFPDCPRECYCPPDFPSALYCDSRNLRKVPLIPSR
                     IHYLYLQNNFITELPVESFKNATGLRWINLDNNRIRKVDQKVLEKLPSLVFLYMEKNH
                     LEEVPSALPQNLEQLRLSQNHISRIPPGVFSKLEKLLLLDLQHNRLSDGVFKPDTFQG
                     LKNLMQLNLAHNTLRKMPPKIPVAIHQLYLDSNKIETIPSGYFKGFPNLAFIRLNYNK
                     LSDRGLPRNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIESEWGRGWGAAT
                     GREAGVSAASTLSHEPHGGGCEKHPMGPWSSNLGLSTYYLCDLKRISDLSGKPPHL"
     misc_feature    397..504
                     /gene="PRELP"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    493..564
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <499..>1098
                     /gene="PRELP"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    565..636
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    637..699
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    700..771
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    772..849
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    850..912
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    913..984
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    985..1059
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1057..>1146
                     /gene="PRELP"
                     /note="Leucine Rich repeats (2 copies); Region: LRR_4;
                     pfam12799"
                     /db_xref="CDD:463713"
ORIGIN      
        1 aataggatcc ggtggaagaa aagccaggca aacacaagca ggcacacacc actaggagat
       61 cagaacttct agctggctct ctgctgccac agctccacca aagggcgggg ggaaacggag
      121 ggagccttgc cgactaaacc cagagctgag aggagaggaa ggtggtgcag gggcgtcacc
      181 tggatcatga ggtcatccct ctgctggctc ctcccacttc tcctcatctt ggcctcagag
      241 gtccaaggcc agccaacaag acgaccaaga cccagaccaa ggctccagcc cagacccaga
      301 ctcaggccca cacccagctt tcctcagccc catgagccat tggagcctac agacctgcct
      361 cctcccctcc caccaggccc tccatctatc tttcctgact gtccccggga gtgctattgc
      421 ccccctgatt tcccgtctgc cctctactgt gacagccgca atcttcgaaa ggtccctctc
      481 atcccatccc gcatccatta cctctatctc cagaacaact tcataactga gctcccagtg
      541 gagtccttta agaacgccac gggcctgagg tggatcaacc tggacaacaa ccgaattcgc
      601 aaggtggacc agaaagtgct agagaaacta cccagcctgg tgttcctcta catggaaaag
      661 aaccaccttg aagaggtgcc ctcggctctg ccccagaact tagagcagct gaggctaagc
      721 cagaaccata tctccaggat cccacccggt gtcttcagca agctggagaa actgctgctc
      781 ctggatctcc aacacaacag gctaagcgac ggcgtcttca agcccgacac cttccagggc
      841 cttaaaaacc tcatgcagct caacctggct cacaacacct tgagaaagat gccacccaag
      901 atccccgtgg ccattcacca gctctacctg gacagcaaca aaatcgagac catccccagc
      961 ggatacttca agggcttccc caacctggcc ttcattcgcc tcaactacaa caagctctca
     1021 gacaggggcc tccccaggaa ctcctttaac atctccaacc tcctcgtgct ccacctgtcg
     1081 cacaacaaga tcagcaatgt gcctgccatc agcaacaagc tggaacacct gtacctcaac
     1141 aacaacagca tcgagagtga gtgggggcgg ggctggggtg cagccactgg gagggaagct
     1201 ggagtctctg ctgcctcaac actttctcat gagcctcatg gtggggggtg cgaaaagcac
     1261 ccaatggggc cctggtcttc aaaccttggt ctttccactt actatctatg tgaccttaaa
     1321 aggatatctg acctctctgg gaagcctcct catttgtaaa atgagaatgg cacgaagttg
     1381 acgtgaagat ttaatagttt aatatggata aagtgcccag aataccatgc ttggagggta
     1441 atagcttttc tccctccacc ccttcccatc agccccagct cctttgccct ccagatctat
     1501 aggtaaggta gacgtggaac atagccccgg acatcctcct aaaagcagaa tggtgacatt
     1561 gaaatgttga ctcgaagatg tcctgggcct gtccactgca gaaactggta gctgtgagga
     1621 aagaggcttc ttcccaagcc taagcctagg ttttaaagag tctgcaaaaa gcatacacag
     1681 agaggcagct atatactcag agtatataca actggtaaaa acgtgcagcc agaaggacat
     1741 gtccgtatgc aggtgctttc tgaatctatc tggaaggctg gaagatttac gcatataaga
     1801 tagaacactt aaggcagaat ttgcctaagc tacattgaca gggtcccggg cttgggataa
     1861 aaaaattgca ggccagaaaa gaggctcgaa gtcacagttt tacttcaatc aaaaatgtca
     1921 ggtctgagta gagcatcagc agaacagttt gaaaacaaaa gagaaaatat gatctggtcc
     1981 gtggacaaaa tcaggctacg ttcacacaag gaatgcagca gctgtgcaga taaaggacac
     2041 cacgaggaaa gagaagcagt cctaaaataa tattaggaat ccttagtttt cgagccagag
     2101 gatgagaggg ggatttttga atttctataa tagtgaaaca agcaggtggg agaacaggct
     2161 tattcactca tctgagataa ttacacaaaa gtagcggaag gcttcttaat atcttgtaag
     2221 aaacaaactc aggaaaaggg aaaactactg tctaatttta ccctgcaggt agcaaactaa
     2281 tggaacacat tacccccagg aggctgtata ggccacagat ctagacagaa atgatacctt
     2341 gattaatcca tggctgacaa gtttctacca cactgtggaa gaacaggctg caggggtggg
     2401 gggtggggca gtgtattatc cagccttctg aggttgaaga cagaaaggtc acacccaccc
     2461 gcaccatttc acagatctga gaactgagca tcagggtggt aaagtccaaa gtcacaaagg
     2521 tcataggaag aaaatccatc aatgtcaggg ctctttctgc tactccagtg ttgaagagag
     2581 aagaaagggg agagagggaa gacgaggaag aggaagaagg agacgaagag caaccacaac
     2641 atcaacccac agaagataaa agcagcaagg cttcgggaga atcaaaagct ccattgagaa
     2701 gatgccatac ctcctgtcat ctaataagag gggaaggaga aaatggaaac tcattttccg
     2761 tttgaaagcc taccacaatt tggccataac ttacctttcc agcttacctt ccccagaatc
     2821 ggtaatcaac ttcagaatca acagattcgt cgtgtcctag ggctccgtgc ccttcccagg
     2881 ccccttttcc tcttcctgtc atccctattt cagttaatgt aaccacctct gctcaccctc
     2941 acgcctcaca tcctgttctc aggaaaacct ccagagtaac ccatccaccg gctggcttca
     3001 gatcttgctt ccccctattg tttctccaca ctgtagccag attcatcttt ctatagtaca
     3061 gacctgatca taggaccctt ccaggtttag cactccagga tactatggtt catatatccc
     3121 accatccatc tcataacaac agtcctgctc agtgccattc ctcagactgg aaatcaaaga
     3181 ccccatcctt agtgaaatat ttgaaggcct gccgtaactg gtggccacaa cttacctctc
     3241 cagcttagtc ttcctagtac atcacattgt actgtgtact ggtcccaaac tctgccatga
     3301 gcttcttggc ccccacagta tcgttcaaat aggtcacagc atcagaacac catccccagg
     3361 tctctacctg ctgtagtcct atctttgaag gttcagctga aagtttactt cctctatgac
     3421 tcttctgagt aaattttcaa taacaattgt tgatcaattc caacttaatt tgtttcgcaa
     3481 atgggtaaat ggagcctgga ggttacggtc gactcattca cgggtcacgc gttcccaaga
     3541 actggtcagc cagttccaga gaggaaaact ctagagtcct tgcccctgtc taccctcttc
     3601 ttcctctttg tcttttactc cagccctgtc aggcctgatc ccctgcccat ctctcctgct
     3661 gacttctccc ctttttctcc atagaaatca atgggaccca gatttgcccc aacgatgtag
     3721 ttgccttcca cgacttctcc tcagatctgg agaacgtacc acacctccgc tacctgcggc
     3781 tggatggaaa ctacctgaag ccgcccatcc cgctggacct catgatgtgc ttccgcctgc
     3841 tgcaatcggt ggtcatctag gccttactct gcccctggag ctcctctggc cacatttgaa
     3901 tgcagtggcc caggtgcctg tgtccaccat ttgttttctc tgtctccttt tcttgctctc
     3961 agctttgcca ttcttaaccc accctcctga tgcaaggaca agccacgtac tctgctgccc
     4021 ctgcagcttc tagagcaaga cttccaaagg cttgatttgg tccacgcagc tcaaagacac
     4081 ccactgtaca tccaaacttc tggccccaga agcacagagg tgtgtataaa gacttcatat
     4141 tctcttctct ctcctcctcc cctcatcact cctgggtaag tctgggctat gaactgacat
     4201 ctggatcttg tcctggccaa agcaagcaga agatggtcag gggaagccta gaggtgaggt
     4261 ttgggaagtc ctgctggaaa ctcctgcatg gtgggcagct ctggcccaaa gaggctgaga
     4321 aacccgtgtc tccctggccg aggatcccat cttccaaaac tgctgctcca ccaccccatt
     4381 cactggtacc agacagtgca ccagctctgt gccagcctgt gttctccgga aaggaagtgc
     4441 aagggaacgg ctgagggagg gcagagggtc agagattcac acaagggcct gcatcaggct
     4501 gtctctgcat agggatgaga tggggccctc cttctcagca cacagcctcc tggctggtcc
     4561 tctctgttcc aagagtaaga gcagggagga acattccagg agaagaatgg ctcaaaaaac
     4621 tagggatcag ctggtgggag tcatagaccc aggccgggcc ccgtgtgggt gcagatggat
     4681 cctgctgccc ccttggccac tctggataag aggcctgatg ccctggggga acacagcatc
     4741 cacagtggag tgtacagagc caccaacccc gccccgccat ctgttctcta tcagtgagga
     4801 tggcccaatt ctttccactc ccgggaagca gttcctgaga aactgctcaa gaaggggtgg
     4861 agcacctgga aatctcccag aagcctcttc cacttatgca gattggcctc cccttctaag
     4921 acagacacag cagtgacacc tggtggctgg tgctggccac atctggctcc cgtgttcctg
     4981 ctcatctctc tggtgtgatt ttccaagatc aaggagttgg ccttgggttc caacttggag
     5041 agccatgggc gatgtgtatg gtctctctct cctctggggt ctaaagggca caaaggtaca
     5101 gaggccccaa ggtgggggat ctgattccca tcatgagtga acacaagtgg gaaccttcag
     5161 gaaaccagtt gaggatacag tttgttccaa tctgctctct taccttatgg gtcccctctg
     5221 ctctcagctt tcatgtggta caccaaggag gtggataaga tccccctcca aggaccctct
     5281 ggcgctcatg ttcctgtatg cagctccatc ctttagaccg tattctaatg caggacgagt
     5341 ccgaaatatt atgcctttcc cttgcaataa tttattccct gtatggactc tccttccccc
     5401 agagttccca ccccaccctg tctggcccag gtgagcagtg tgtcaggcct ctaagggaag
     5461 cctgggttcc acggagctga ctcaacttca tcttcccctt aactccctct aggggatgct
     5521 gcccctctac agcctctgag tgtatgttgg tgggggtggg ggcatatgtc ctagaaatga
     5581 ttagaatacg gtgcccactc ccaagttagg ttgaaaaaag ttccagagat gtttaagaaa
     5641 ttggattaag ctaggtccct aacttcaaga aattcccatt atactcttat ttttcccttt
     5701 tgctaattta cagaatatgg gcccatttca ttacagcctc cgtcccccat gctcgcatac
     5761 aactgcttca ttcttcgagg ctgcagctgg tttcttcgag gctgcagctg gtttctccaa
     5821 ggctcctgct tagagtcaag atattattgt gtctgtaagc aacctgttgc tatggcctgg
     5881 ataagcccct tctgcacctt atccccacct tgcaccctca gcccctctga tgaggccctc
     5941 aggggagcac agctcctggg actccccggg gaggaggggt cattccccag ctcctgccaa
     6001 cctgaagtgc tttgattcag cagcaacaaa atcaccatca tcctgttgcc gcatctggca
     6061 tatttctgct tcctccattg ctccctgtat ctgtaaacca gaggaaatta aattggcttt
     6121 acagcaccac cctcccacat acaatgtgct gttttccctt gggcttaagg aagccccctc
     6181 ctgcatatac aagttaactc tctcagtgct gctgacatat gcacatacag gtgtgtagga
     6241 aggtgtgtat gtatgtgtac tctgtacata tatctgttct ttcttgaaga ccgtattaac
     6301 tttgtgcaac aactttgaca ttccagcatg cttcacagca gagaaaataa agttatatga
     6361 aaaata
//
LOCUS       XR_004352221            4091 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and arginine rich end leucine
            rich repeat protein (PRELP), transcript variant X2, misc_RNA.
ACCESSION   XR_004352221
VERSION     XR_004352221.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4091
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4091
                     /gene="PRELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 32 long SRA reads, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762115"
     misc_RNA        1..4091
                     /gene="PRELP"
                     /product="proline and arginine rich end leucine rich
                     repeat protein, transcript variant X2"
                     /db_xref="GeneID:116762115"
ORIGIN      
        1 aataggatcc ggtggaagaa aagccaggca aacacaagca ggcacacacc actaggagat
       61 cagaacttct agctggctct ctgctgccac agctccacca aagggcgggg ggaaacggag
      121 ggagccttgc cgactaaacc cagagctgag aggagaggaa ggtggtgcag gggcgtcacc
      181 tggatcatga ggtcatccct ctgctggctc ctcccacttc tcctcatctt ggcctcagag
      241 gtccaaggcc agccaacaag acgaccaaga cccagaccaa ggctccagcc cagacccaga
      301 ctcaggccca cacccagctt tcctcagccc catgagccat tggagcctac agacctgcct
      361 cctcccctcc caccaggccc tccatctatc tttcctgact gtccccggga gtgctattgc
      421 ccccctgatt tcccgtctgc cctctactgt gacagccgca atcttcgaaa ggtccctctc
      481 atcccatccc gcatccatta cctctatctc cagaacaact tcataactga gctcccagtg
      541 gagtccttta agaacgccac gggcctgagg tggatcaacc tggacaacaa ccgaattcgc
      601 aaggtggacc agaaagtgct agagaaacta cccagcctgg tgttcctcta catggaaaag
      661 aaccaccttg aagaggtgcc ctcggctctg ccccagaact tagagcagct gaggctaagc
      721 cagaaccata tctccaggat cccacccggt gtcttcagca agctggagaa actgctgctc
      781 ctggatctcc aacacaacag gctaagcgac ggcgtcttca agcccgacac cttccagggc
      841 cttaaaaacc tcatgcagct caacctggct cacaacacct tgagaaagat gccacccaag
      901 atccccgtgg ccattcacca gctctacctg gacagcaaca aaatcgagac catccccagc
      961 ggatacttca agggcttccc caacctggcc ttcattcgcc tcaactacaa caagctctca
     1021 gacaggggcc tccccaggaa ctcctttaac atctccaacc tcctcgtgct ccacctgtcg
     1081 cacaacaaga tcagcaatgt gcctgccatc agcaacaagc tggaacacct gtacctcaac
     1141 aacaacagca tcgagatgtt gaagagagaa gaaaggggag agagggaaga cgaggaagag
     1201 gaagaaggag acgaagagca accacaacat caacccacag aagataaaag cagcaaggct
     1261 tcgggagaat caaaagctcc attgagaaga tgccatacct cctgtcatct aataagaggg
     1321 gaaggagaaa atggaaactc attttccgtt tgaaagccta ccacaatttg gccataactt
     1381 acctttccag cttaccttcc ccagaatcga aatcaatggg acccagattt gccccaacga
     1441 tgtagttgcc ttccacgact tctcctcaga tctggagaac gtaccacacc tccgctacct
     1501 gcggctggat ggaaactacc tgaagccgcc catcccgctg gacctcatga tgtgcttccg
     1561 cctgctgcaa tcggtggtca tctaggcctt actctgcccc tggagctcct ctggccacat
     1621 ttgaatgcag tggcccaggt gcctgtgtcc accatttgtt ttctctgtct ccttttcttg
     1681 ctctcagctt tgccattctt aacccaccct cctgatgcaa ggacaagcca cgtactctgc
     1741 tgcccctgca gcttctagag caagacttcc aaaggcttga tttggtccac gcagctcaaa
     1801 gacacccact gtacatccaa acttctggcc ccagaagcac agaggtgtgt ataaagactt
     1861 catattctct tctctctcct cctcccctca tcactcctgg gtaagtctgg gctatgaact
     1921 gacatctgga tcttgtcctg gccaaagcaa gcagaagatg gtcaggggaa gcctagaggt
     1981 gaggtttggg aagtcctgct ggaaactcct gcatggtggg cagctctggc ccaaagaggc
     2041 tgagaaaccc gtgtctccct ggccgaggat cccatcttcc aaaactgctg ctccaccacc
     2101 ccattcactg gtaccagaca gtgcaccagc tctgtgccag cctgtgttct ccggaaagga
     2161 agtgcaaggg aacggctgag ggagggcaga gggtcagaga ttcacacaag ggcctgcatc
     2221 aggctgtctc tgcataggga tgagatgggg ccctccttct cagcacacag cctcctggct
     2281 ggtcctctct gttccaagag taagagcagg gaggaacatt ccaggagaag aatggctcaa
     2341 aaaactaggg atcagctggt gggagtcata gacccaggcc gggccccgtg tgggtgcaga
     2401 tggatcctgc tgcccccttg gccactctgg ataagaggcc tgatgccctg ggggaacaca
     2461 gcatccacag tggagtgtac agagccacca accccgcccc gccatctgtt ctctatcagt
     2521 gaggatggcc caattctttc cactcccggg aagcagttcc tgagaaactg ctcaagaagg
     2581 ggtggagcac ctggaaatct cccagaagcc tcttccactt atgcagattg gcctcccctt
     2641 ctaagacaga cacagcagtg acacctggtg gctggtgctg gccacatctg gctcccgtgt
     2701 tcctgctcat ctctctggtg tgattttcca agatcaagga gttggccttg ggttccaact
     2761 tggagagcca tgggcgatgt gtatggtctc tctctcctct ggggtctaaa gggcacaaag
     2821 gtacagaggc cccaaggtgg gggatctgat tcccatcatg agtgaacaca agtgggaacc
     2881 ttcaggaaac cagttgagga tacagtttgt tccaatctgc tctcttacct tatgggtccc
     2941 ctctgctctc agctttcatg tggtacacca aggaggtgga taagatcccc ctccaaggac
     3001 cctctggcgc tcatgttcct gtatgcagct ccatccttta gaccgtattc taatgcagga
     3061 cgagtccgaa atattatgcc tttcccttgc aataatttat tccctgtatg gactctcctt
     3121 cccccagagt tcccacccca ccctgtctgg cccaggtgag cagtgtgtca ggcctctaag
     3181 ggaagcctgg gttccacgga gctgactcaa cttcatcttc cccttaactc cctctagggg
     3241 atgctgcccc tctacagcct ctgagtgtat gttggtgggg gtgggggcat atgtcctaga
     3301 aatgattaga atacggtgcc cactcccaag ttaggttgaa aaaagttcca gagatgttta
     3361 agaaattgga ttaagctagg tccctaactt caagaaattc ccattatact cttatttttc
     3421 ccttttgcta atttacagaa tatgggccca tttcattaca gcctccgtcc cccatgctcg
     3481 catacaactg cttcattctt cgaggctgca gctggtttct tcgaggctgc agctggtttc
     3541 tccaaggctc ctgcttagag tcaagatatt attgtgtctg taagcaacct gttgctatgg
     3601 cctggataag ccccttctgc accttatccc caccttgcac cctcagcccc tctgatgagg
     3661 ccctcagggg agcacagctc ctgggactcc ccggggagga ggggtcattc cccagctcct
     3721 gccaacctga agtgctttga ttcagcagca acaaaatcac catcatcctg ttgccgcatc
     3781 tggcatattt ctgcttcctc cattgctccc tgtatctgta aaccagagga aattaaattg
     3841 gctttacagc accaccctcc cacatacaat gtgctgtttt cccttgggct taaggaagcc
     3901 ccctcctgca tatacaagtt aactctctca gtgctgctga catatgcaca tacaggtgtg
     3961 taggaaggtg tgtatgtatg tgtactctgt acatatatct gttctttctt gaagaccgta
     4021 ttaactttgt gcaacaactt tgacattcca gcatgcttca cagcagagaa aataaagtta
     4081 tatgaaaaat a
//
LOCUS       XM_032648887            3838 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and arginine rich end leucine
            rich repeat protein (PRELP), transcript variant X3, mRNA.
ACCESSION   XM_032648887
VERSION     XM_032648887.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3838
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3838
                     /gene="PRELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 55 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762115"
     CDS             187..1332
                     /gene="PRELP"
                     /codon_start=1
                     /product="prolargin isoform X2"
                     /protein_id="XP_032504778.1"
                     /db_xref="GeneID:116762115"
                     /translation="MRSSLCWLLPLLLILASEVQGQPTRRPRPRPRLQPRPRLRPTPS
                     FPQPHEPLEPTDLPPPLPPGPPSIFPDCPRECYCPPDFPSALYCDSRNLRKVPLIPSR
                     IHYLYLQNNFITELPVESFKNATGLRWINLDNNRIRKVDQKVLEKLPSLVFLYMEKNH
                     LEEVPSALPQNLEQLRLSQNHISRIPPGVFSKLEKLLLLDLQHNRLSDGVFKPDTFQG
                     LKNLMQLNLAHNTLRKMPPKIPVAIHQLYLDSNKIETIPSGYFKGFPNLAFIRLNYNK
                     LSDRGLPRNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIEKINGTQICPND
                     VVAFHDFSSDLENVPHLRYLRLDGNYLKPPIPLDLMMCFRLLQSVVI"
     misc_feature    397..504
                     /gene="PRELP"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    493..564
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <499..>1098
                     /gene="PRELP"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    565..636
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    637..699
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    700..771
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    772..849
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    850..912
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    913..>1305
                     /gene="PRELP"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     Region: PPP1R42; cl42388"
                     /db_xref="CDD:455733"
     misc_feature    913..984
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    985..1059
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 aataggatcc ggtggaagaa aagccaggca aacacaagca ggcacacacc actaggagat
       61 cagaacttct agctggctct ctgctgccac agctccacca aagggcgggg ggaaacggag
      121 ggagccttgc cgactaaacc cagagctgag aggagaggaa ggtggtgcag gggcgtcacc
      181 tggatcatga ggtcatccct ctgctggctc ctcccacttc tcctcatctt ggcctcagag
      241 gtccaaggcc agccaacaag acgaccaaga cccagaccaa ggctccagcc cagacccaga
      301 ctcaggccca cacccagctt tcctcagccc catgagccat tggagcctac agacctgcct
      361 cctcccctcc caccaggccc tccatctatc tttcctgact gtccccggga gtgctattgc
      421 ccccctgatt tcccgtctgc cctctactgt gacagccgca atcttcgaaa ggtccctctc
      481 atcccatccc gcatccatta cctctatctc cagaacaact tcataactga gctcccagtg
      541 gagtccttta agaacgccac gggcctgagg tggatcaacc tggacaacaa ccgaattcgc
      601 aaggtggacc agaaagtgct agagaaacta cccagcctgg tgttcctcta catggaaaag
      661 aaccaccttg aagaggtgcc ctcggctctg ccccagaact tagagcagct gaggctaagc
      721 cagaaccata tctccaggat cccacccggt gtcttcagca agctggagaa actgctgctc
      781 ctggatctcc aacacaacag gctaagcgac ggcgtcttca agcccgacac cttccagggc
      841 cttaaaaacc tcatgcagct caacctggct cacaacacct tgagaaagat gccacccaag
      901 atccccgtgg ccattcacca gctctacctg gacagcaaca aaatcgagac catccccagc
      961 ggatacttca agggcttccc caacctggcc ttcattcgcc tcaactacaa caagctctca
     1021 gacaggggcc tccccaggaa ctcctttaac atctccaacc tcctcgtgct ccacctgtcg
     1081 cacaacaaga tcagcaatgt gcctgccatc agcaacaagc tggaacacct gtacctcaac
     1141 aacaacagca tcgagaaaat caatgggacc cagatttgcc ccaacgatgt agttgccttc
     1201 cacgacttct cctcagatct ggagaacgta ccacacctcc gctacctgcg gctggatgga
     1261 aactacctga agccgcccat cccgctggac ctcatgatgt gcttccgcct gctgcaatcg
     1321 gtggtcatct aggccttact ctgcccctgg agctcctctg gccacatttg aatgcagtgg
     1381 cccaggtgcc tgtgtccacc atttgttttc tctgtctcct tttcttgctc tcagctttgc
     1441 cattcttaac ccaccctcct gatgcaagga caagccacgt actctgctgc ccctgcagct
     1501 tctagagcaa gacttccaaa ggcttgattt ggtccacgca gctcaaagac acccactgta
     1561 catccaaact tctggcccca gaagcacaga ggtgtgtata aagacttcat attctcttct
     1621 ctctcctcct cccctcatca ctcctgggta agtctgggct atgaactgac atctggatct
     1681 tgtcctggcc aaagcaagca gaagatggtc aggggaagcc tagaggtgag gtttgggaag
     1741 tcctgctgga aactcctgca tggtgggcag ctctggccca aagaggctga gaaacccgtg
     1801 tctccctggc cgaggatccc atcttccaaa actgctgctc caccacccca ttcactggta
     1861 ccagacagtg caccagctct gtgccagcct gtgttctccg gaaaggaagt gcaagggaac
     1921 ggctgaggga gggcagaggg tcagagattc acacaagggc ctgcatcagg ctgtctctgc
     1981 atagggatga gatggggccc tccttctcag cacacagcct cctggctggt cctctctgtt
     2041 ccaagagtaa gagcagggag gaacattcca ggagaagaat ggctcaaaaa actagggatc
     2101 agctggtggg agtcatagac ccaggccggg ccccgtgtgg gtgcagatgg atcctgctgc
     2161 ccccttggcc actctggata agaggcctga tgccctgggg gaacacagca tccacagtgg
     2221 agtgtacaga gccaccaacc ccgccccgcc atctgttctc tatcagtgag gatggcccaa
     2281 ttctttccac tcccgggaag cagttcctga gaaactgctc aagaaggggt ggagcacctg
     2341 gaaatctccc agaagcctct tccacttatg cagattggcc tccccttcta agacagacac
     2401 agcagtgaca cctggtggct ggtgctggcc acatctggct cccgtgttcc tgctcatctc
     2461 tctggtgtga ttttccaaga tcaaggagtt ggccttgggt tccaacttgg agagccatgg
     2521 gcgatgtgta tggtctctct ctcctctggg gtctaaaggg cacaaaggta cagaggcccc
     2581 aaggtggggg atctgattcc catcatgagt gaacacaagt gggaaccttc aggaaaccag
     2641 ttgaggatac agtttgttcc aatctgctct cttaccttat gggtcccctc tgctctcagc
     2701 tttcatgtgg tacaccaagg aggtggataa gatccccctc caaggaccct ctggcgctca
     2761 tgttcctgta tgcagctcca tcctttagac cgtattctaa tgcaggacga gtccgaaata
     2821 ttatgccttt cccttgcaat aatttattcc ctgtatggac tctccttccc ccagagttcc
     2881 caccccaccc tgtctggccc aggtgagcag tgtgtcaggc ctctaaggga agcctgggtt
     2941 ccacggagct gactcaactt catcttcccc ttaactccct ctaggggatg ctgcccctct
     3001 acagcctctg agtgtatgtt ggtgggggtg ggggcatatg tcctagaaat gattagaata
     3061 cggtgcccac tcccaagtta ggttgaaaaa agttccagag atgtttaaga aattggatta
     3121 agctaggtcc ctaacttcaa gaaattccca ttatactctt atttttccct tttgctaatt
     3181 tacagaatat gggcccattt cattacagcc tccgtccccc atgctcgcat acaactgctt
     3241 cattcttcga ggctgcagct ggtttcttcg aggctgcagc tggtttctcc aaggctcctg
     3301 cttagagtca agatattatt gtgtctgtaa gcaacctgtt gctatggcct ggataagccc
     3361 cttctgcacc ttatccccac cttgcaccct cagcccctct gatgaggccc tcaggggagc
     3421 acagctcctg ggactccccg gggaggaggg gtcattcccc agctcctgcc aacctgaagt
     3481 gctttgattc agcagcaaca aaatcaccat catcctgttg ccgcatctgg catatttctg
     3541 cttcctccat tgctccctgt atctgtaaac cagaggaaat taaattggct ttacagcacc
     3601 accctcccac atacaatgtg ctgttttccc ttgggcttaa ggaagccccc tcctgcatat
     3661 acaagttaac tctctcagtg ctgctgacat atgcacatac aggtgtgtag gaaggtgtgt
     3721 atgtatgtgt actctgtaca tatatctgtt ctttcttgaa gaccgtatta actttgtgca
     3781 acaactttga cattccagca tgcttcacag cagagaaaat aaagttatat gaaaaata
//
LOCUS       XM_032648894            4018 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and arginine rich end leucine
            rich repeat protein (PRELP), transcript variant X4, mRNA.
ACCESSION   XM_032648894
VERSION     XM_032648894.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4018
                     /gene="PRELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 46 long SRA reads, 9
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116762115"
     CDS             367..1512
                     /gene="PRELP"
                     /codon_start=1
                     /product="prolargin isoform X2"
                     /protein_id="XP_032504785.1"
                     /db_xref="GeneID:116762115"
                     /translation="MRSSLCWLLPLLLILASEVQGQPTRRPRPRPRLQPRPRLRPTPS
                     FPQPHEPLEPTDLPPPLPPGPPSIFPDCPRECYCPPDFPSALYCDSRNLRKVPLIPSR
                     IHYLYLQNNFITELPVESFKNATGLRWINLDNNRIRKVDQKVLEKLPSLVFLYMEKNH
                     LEEVPSALPQNLEQLRLSQNHISRIPPGVFSKLEKLLLLDLQHNRLSDGVFKPDTFQG
                     LKNLMQLNLAHNTLRKMPPKIPVAIHQLYLDSNKIETIPSGYFKGFPNLAFIRLNYNK
                     LSDRGLPRNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIEKINGTQICPND
                     VVAFHDFSSDLENVPHLRYLRLDGNYLKPPIPLDLMMCFRLLQSVVI"
     misc_feature    577..684
                     /gene="PRELP"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    673..744
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <679..>1278
                     /gene="PRELP"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    745..816
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    817..879
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    880..951
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    952..1029
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1030..1092
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1093..>1485
                     /gene="PRELP"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     Region: PPP1R42; cl42388"
                     /db_xref="CDD:455733"
     misc_feature    1093..1164
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1165..1239
                     /gene="PRELP"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 aataggatcc ggtggaagaa aagccaggca aacacaagca ggcacacacc actaggagat
       61 cagaacttct agctggctct ctgctgccac agctccacca aagggcgggg ggaaacggag
      121 ggagccttgc cgactaaacc cagagctgag aggagaggaa ggtggtgcag ggcaccccaa
      181 gaaacctgca tctccaacgt gtcccagacc ccaggaagga gagggacaga ccaccacaac
      241 tgtgaagcag caacaaggag ggccattgga agcaatgtgg aaacagagac cccagaggga
      301 gaccagaggg gctgtcacag ggatgatggc cctgggaggg gaaagtacag gggcgtcacc
      361 tggatcatga ggtcatccct ctgctggctc ctcccacttc tcctcatctt ggcctcagag
      421 gtccaaggcc agccaacaag acgaccaaga cccagaccaa ggctccagcc cagacccaga
      481 ctcaggccca cacccagctt tcctcagccc catgagccat tggagcctac agacctgcct
      541 cctcccctcc caccaggccc tccatctatc tttcctgact gtccccggga gtgctattgc
      601 ccccctgatt tcccgtctgc cctctactgt gacagccgca atcttcgaaa ggtccctctc
      661 atcccatccc gcatccatta cctctatctc cagaacaact tcataactga gctcccagtg
      721 gagtccttta agaacgccac gggcctgagg tggatcaacc tggacaacaa ccgaattcgc
      781 aaggtggacc agaaagtgct agagaaacta cccagcctgg tgttcctcta catggaaaag
      841 aaccaccttg aagaggtgcc ctcggctctg ccccagaact tagagcagct gaggctaagc
      901 cagaaccata tctccaggat cccacccggt gtcttcagca agctggagaa actgctgctc
      961 ctggatctcc aacacaacag gctaagcgac ggcgtcttca agcccgacac cttccagggc
     1021 cttaaaaacc tcatgcagct caacctggct cacaacacct tgagaaagat gccacccaag
     1081 atccccgtgg ccattcacca gctctacctg gacagcaaca aaatcgagac catccccagc
     1141 ggatacttca agggcttccc caacctggcc ttcattcgcc tcaactacaa caagctctca
     1201 gacaggggcc tccccaggaa ctcctttaac atctccaacc tcctcgtgct ccacctgtcg
     1261 cacaacaaga tcagcaatgt gcctgccatc agcaacaagc tggaacacct gtacctcaac
     1321 aacaacagca tcgagaaaat caatgggacc cagatttgcc ccaacgatgt agttgccttc
     1381 cacgacttct cctcagatct ggagaacgta ccacacctcc gctacctgcg gctggatgga
     1441 aactacctga agccgcccat cccgctggac ctcatgatgt gcttccgcct gctgcaatcg
     1501 gtggtcatct aggccttact ctgcccctgg agctcctctg gccacatttg aatgcagtgg
     1561 cccaggtgcc tgtgtccacc atttgttttc tctgtctcct tttcttgctc tcagctttgc
     1621 cattcttaac ccaccctcct gatgcaagga caagccacgt actctgctgc ccctgcagct
     1681 tctagagcaa gacttccaaa ggcttgattt ggtccacgca gctcaaagac acccactgta
     1741 catccaaact tctggcccca gaagcacaga ggtgtgtata aagacttcat attctcttct
     1801 ctctcctcct cccctcatca ctcctgggta agtctgggct atgaactgac atctggatct
     1861 tgtcctggcc aaagcaagca gaagatggtc aggggaagcc tagaggtgag gtttgggaag
     1921 tcctgctgga aactcctgca tggtgggcag ctctggccca aagaggctga gaaacccgtg
     1981 tctccctggc cgaggatccc atcttccaaa actgctgctc caccacccca ttcactggta
     2041 ccagacagtg caccagctct gtgccagcct gtgttctccg gaaaggaagt gcaagggaac
     2101 ggctgaggga gggcagaggg tcagagattc acacaagggc ctgcatcagg ctgtctctgc
     2161 atagggatga gatggggccc tccttctcag cacacagcct cctggctggt cctctctgtt
     2221 ccaagagtaa gagcagggag gaacattcca ggagaagaat ggctcaaaaa actagggatc
     2281 agctggtggg agtcatagac ccaggccggg ccccgtgtgg gtgcagatgg atcctgctgc
     2341 ccccttggcc actctggata agaggcctga tgccctgggg gaacacagca tccacagtgg
     2401 agtgtacaga gccaccaacc ccgccccgcc atctgttctc tatcagtgag gatggcccaa
     2461 ttctttccac tcccgggaag cagttcctga gaaactgctc aagaaggggt ggagcacctg
     2521 gaaatctccc agaagcctct tccacttatg cagattggcc tccccttcta agacagacac
     2581 agcagtgaca cctggtggct ggtgctggcc acatctggct cccgtgttcc tgctcatctc
     2641 tctggtgtga ttttccaaga tcaaggagtt ggccttgggt tccaacttgg agagccatgg
     2701 gcgatgtgta tggtctctct ctcctctggg gtctaaaggg cacaaaggta cagaggcccc
     2761 aaggtggggg atctgattcc catcatgagt gaacacaagt gggaaccttc aggaaaccag
     2821 ttgaggatac agtttgttcc aatctgctct cttaccttat gggtcccctc tgctctcagc
     2881 tttcatgtgg tacaccaagg aggtggataa gatccccctc caaggaccct ctggcgctca
     2941 tgttcctgta tgcagctcca tcctttagac cgtattctaa tgcaggacga gtccgaaata
     3001 ttatgccttt cccttgcaat aatttattcc ctgtatggac tctccttccc ccagagttcc
     3061 caccccaccc tgtctggccc aggtgagcag tgtgtcaggc ctctaaggga agcctgggtt
     3121 ccacggagct gactcaactt catcttcccc ttaactccct ctaggggatg ctgcccctct
     3181 acagcctctg agtgtatgtt ggtgggggtg ggggcatatg tcctagaaat gattagaata
     3241 cggtgcccac tcccaagtta ggttgaaaaa agttccagag atgtttaaga aattggatta
     3301 agctaggtcc ctaacttcaa gaaattccca ttatactctt atttttccct tttgctaatt
     3361 tacagaatat gggcccattt cattacagcc tccgtccccc atgctcgcat acaactgctt
     3421 cattcttcga ggctgcagct ggtttcttcg aggctgcagc tggtttctcc aaggctcctg
     3481 cttagagtca agatattatt gtgtctgtaa gcaacctgtt gctatggcct ggataagccc
     3541 cttctgcacc ttatccccac cttgcaccct cagcccctct gatgaggccc tcaggggagc
     3601 acagctcctg ggactccccg gggaggaggg gtcattcccc agctcctgcc aacctgaagt
     3661 gctttgattc agcagcaaca aaatcaccat catcctgttg ccgcatctgg catatttctg
     3721 cttcctccat tgctccctgt atctgtaaac cagaggaaat taaattggct ttacagcacc
     3781 accctcccac atacaatgtg ctgttttccc ttgggcttaa ggaagccccc tcctgcatat
     3841 acaagttaac tctctcagtg ctgctgacat atgcacatac aggtgtgtag gaaggtgtgt
     3901 atgtatgtgt actctgtaca tatatctgtt ctttcttgaa gaccgtatta actttgtgca
     3961 acaactttga cattccagca tgcttcacag cagagaaaat aaagttatat gaaaaata
//
LOCUS       XR_004352222            2244 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and arginine rich end leucine
            rich repeat protein (PRELP), transcript variant X5, misc_RNA.
ACCESSION   XR_004352222
VERSION     XR_004352222.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2244
                     /gene="PRELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 long SRA reads, 9
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116762115"
     misc_RNA        1..2244
                     /gene="PRELP"
                     /product="proline and arginine rich end leucine rich
                     repeat protein, transcript variant X5"
                     /db_xref="GeneID:116762115"
ORIGIN      
        1 aataggatcc ggtggaagaa aagccaggca aacacaagca ggcacacacc actaggagat
       61 cagaacttct agctggctct ctgctgccac agctccacca aagggcgggg ggaaacggag
      121 ggagccttgc cgactaaacc cagagctgag aggagaggaa ggtggtgcag gggcgtcacc
      181 tggatcatga ggtcatccct ctgctggctc ctcccacttc tcctcatctt ggcctcagag
      241 gtccaaggcc agccaacaag acgaccaaga cccagaccaa ggctccagcc cagacccaga
      301 ctcaggccca cacccagctt tcctcagccc catgagccat tggagcctac agacctgcct
      361 cctcccctcc caccaggccc tccatctatc tttcctgact gtccccggga gtgctattgc
      421 ccccctgatt tcccgtctgc cctctactgt gacagccgca atcttcgaaa ggtccctctc
      481 atcccatccc gcatccatta cctctatctc cagaacaact tcataactga gctcccagtg
      541 gagtccttta agaacgccac gggcctgagg tggatcaacc tggacaacaa ccgaattcgc
      601 aaggtggacc agaaagtgct agagaaacta cccagcctgg tgttcctcta catggaaaag
      661 aaccaccttg aagaggtgcc ctcggctctg ccccagaact tagagcagct gaggctaagc
      721 cagaaccata tctccaggat cccacccggt gtcttcagca agctggagaa actgctgctc
      781 ctggatctcc aacacaacag gctaagcgac ggcgtcttca agcccgacac cttccagggc
      841 cttaaaaacc tcatgcagct caacctggct cacaacacct tgagaaagat gccacccaag
      901 atccccgtgg ccattcacca gctctacctg gacagcaaca aaatcgagac catccccagc
      961 ggatacttca agggcttccc caacctggcc ttcattcgcc tcaactacaa caagctctca
     1021 gacaggggcc tccccaggaa ctcctttaac atctccaacc tcctcgtgct ccacctgtcg
     1081 cacaacaaga tcagcaatgt gcctgccatc agcaacaagc tggaacacct gtacctcaac
     1141 aacaacagca tcgagaaaat caatgggacc cagatttgcc ccaacgatgt agttgccttc
     1201 cacgacttct cctcagatct ggagaacgta ccacacctcc gctacctgcg gctggatgga
     1261 aactacctga agccgcccat cccgctggac ctcatgatgt gcttccgcct gctgcaatcg
     1321 gtggtcatct aggccttact ctgcccctgg agctcctctg gccacatttg aatgcagtgg
     1381 cccaggtgcc tgtgtccacc atttgttttc tctgtctcct tttcttgctc tcagctttgc
     1441 cattcttaac ccaccctcct gatgcaagga caagccacgt actctgctgc ccctgcagct
     1501 tctagagcaa gacttccaaa ggcttgattt ggtccacgca gctcaaagac acccactgta
     1561 catccaaact tctggcccca gaagcacaga gaatatgggc ccatttcatt acagcctccg
     1621 tcccccatgc tcgcatacaa ctgcttcatt cttcgaggct gcagctggtt tcttcgaggc
     1681 tgcagctggt ttctccaagg ctcctgctta gagtcaagat attattgtgt ctgtaagcaa
     1741 cctgttgcta tggcctggat aagccccttc tgcaccttat ccccaccttg caccctcagc
     1801 ccctctgatg aggccctcag gggagcacag ctcctgggac tccccgggga ggaggggtca
     1861 ttccccagct cctgccaacc tgaagtgctt tgattcagca gcaacaaaat caccatcatc
     1921 ctgttgccgc atctggcata tttctgcttc ctccattgct ccctgtatct gtaaaccaga
     1981 ggaaattaaa ttggctttac agcaccaccc tcccacatac aatgtgctgt tttcccttgg
     2041 gcttaaggaa gccccctcct gcatatacaa gttaactctc tcagtgctgc tgacatatgc
     2101 acatacaggt gtgtaggaag gtgtgtatgt atgtgtactc tgtacatata tctgttcttt
     2161 cttgaagacc gtattaactt tgtgcaacaa ctttgacatt ccagcatgct tcacagcaga
     2221 gaaaataaag ttatatgaaa aata
//
LOCUS       XM_032648902            1834 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus opticin (OPTC), mRNA.
ACCESSION   XM_032648902
VERSION     XM_032648902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1834
                     /gene="OPTC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116762145"
     CDS             345..1343
                     /gene="OPTC"
                     /codon_start=1
                     /product="opticin"
                     /protein_id="XP_032504793.1"
                     /db_xref="GeneID:116762145"
                     /translation="MKLLALLSLLALMLAQEVRTASLPETEREPEGDQPHGEGDSYAV
                     LQLGDYVLSLDNYDQVIDLSNYDELTDYREQLPKVKGTSLASPTRTSFTQSTRAPRTP
                     PSNPTMARPTTRGLLVSLTSHGLPTCLICVCLGSSVYCDDADLENIPPLPQTTAYLYA
                     RFNRISHIRAGDFKGLTKLKRIDLSSNFISSIDDDALLLLPALQDLILPENKLAVLPV
                     LPTGIEVLDIRLNQLQSSGIQPEAFRALEKLQFLYLADNLLDSIPRSLPLSLRSLHLQ
                     NNMIETMQRDTFCDAERPKHTRRQLEDIRLDGNPINLNLFPSAYFCLPRLPTGRFT"
     misc_feature    807..878
                     /gene="OPTC"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <813..>1190
                     /gene="OPTC"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    879..950
                     /gene="OPTC"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    951..1010
                     /gene="OPTC"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1011..1088
                     /gene="OPTC"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1089..1151
                     /gene="OPTC"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1152..1244
                     /gene="OPTC"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1245..1319
                     /gene="OPTC"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 atgtagacaa ggggacatgc atgagtgtgt gtgtgttaag taaatgagcc tttgccaggt
       61 gcctgcactt tcctgcgtga gtgaatatca gtgtgtggat gagcatgtag agactgaagt
      121 ggcgagcagt gcggggggct ggcaggagat atccccctag atgtagcccc agccttgaag
      181 gagcctgcac atgcagtgaa ggcactaagt ctgtgacaaa tggcttaaga gtctgcaagt
      241 gtgggggtgg gaagtggagt gagtttgtga gctgttcccc caggactgga tacctaagtg
      301 attcggcccc attctcatcc catcccccac ctgccaggac ttccatgaag ctcctggcct
      361 tactcagcct gctggccctg atgctggccc aggaagtaag gacagcatct ctcccagaga
      421 cggagaggga gccggaagga gaccagccac acggagaagg cgattcttat gcagttctgc
      481 aactgggaga ctatgtcctg agcctggaca actacgatca agtcattgac ctgagcaact
      541 atgatgaact cacagactac agggagcagc tccccaaggt taaagggacc agcctggctt
      601 ctccaaccag gacaagtttc actcagagca caagggctcc aaggacaccc ccttcaaacc
      661 ccacaatggc caggcctacg acgcggggcc tgctggtttc cctgaccagc catggcctgc
      721 caacctgtct gatctgcgtg tgccttggtt cctctgtgta ctgtgatgat gctgacctag
      781 agaacatccc tcctcttccc cagacaaccg cttacctgta cgcccgcttc aaccgcatca
      841 gccatattcg ggctggagac ttcaaagggc tgacaaaact gaagaggatt gacctctcta
      901 gcaatttcat ctcctccatc gatgacgatg ccctcctcct gctgcctgct ctgcaggatc
      961 tgatcctccc tgagaacaag ctggcagtgc tacctgtgct gcccactggc attgaggtcc
     1021 tggacatccg cctgaaccag ctccagagtt cagggataca gcctgaagcc ttcagggcgc
     1081 tggagaagct gcagttcctc tacctggccg ataaccttct ggactccatc cccaggtccc
     1141 tgcccctgag cctgcgctca ctacacctgc agaataacat gatagagacc atgcagaggg
     1201 acaccttctg tgacgctgag aggcccaagc acacaaggag gcagctggaa gacatccgcc
     1261 tggacggcaa tcccatcaac ctgaacctct tccccagtgc ctacttctgc ctgcctcggc
     1321 tccccacagg ccgcttcacc tagctcaccc cttccactgc tcccaagtaa gagccttgga
     1381 ggaccaccaa gggcacgggc ctcctgggcc acagggcccg atccctgtca gcggtctttc
     1441 atccaggcac taatcatcct caagatgcaa ttgcaaaact ccacacacac ccctccccca
     1501 acacacacac agcacggaaa tgtcctccag gagccagatt tgtatttctc catcctcttt
     1561 cctgaacacc ttatggctcc tggctcagag aatagcgacg tctgcagcaa aactctttcc
     1621 catatccccc atccctccta cccatacaga atgccaagaa aatcatgtaa gaggaagagg
     1681 aggaacagaa agagaaggag gaagtgggga gaagcagtgg cgtgctggag ccagctctta
     1741 ctactaggct cgcaagaact gatcattaaa attttccaga attttgcaaa ccagttgtta
     1801 aatacagcca ttattaaaaa ctaaattata taaa
//
LOCUS       XM_032648911            6306 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming growth factor beta receptor
            3 (TGFBR3), transcript variant X1, mRNA.
ACCESSION   XM_032648911
VERSION     XM_032648911.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6306
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6306
                     /gene="TGFBR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762156"
     CDS             452..3007
                     /gene="TGFBR3"
                     /codon_start=1
                     /product="transforming growth factor beta receptor type 3
                     isoform X1"
                     /protein_id="XP_032504802.1"
                     /db_xref="GeneID:116762156"
                     /translation="MASHCVIAMFALMSSCLATAGPEPSAQCELSPVNASHPVQALME
                     SFTVLSGCASRGTVGLPQEVHVLNLRTADQGPGQPQREVTLHLNPISSVYIHHKPVVF
                     LLNSPQPLVWHLKTERLAIGISRLFLVSEGSVVHFSSGNFSLSAETEERSFPHGNEHL
                     LNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPTCNIGKNFLSLNYLAGYLQPKAA
                     EGCVISSQPRDKEVHIIELITPNSNPYSAFQVDIIIDIRPSRKDPEVVKDLILILKCK
                     KSVNWVIKSFDIKGNLKVIAPNSIGFGKESERSMIMTKSIRDDIPSTQESLVKWALDN
                     GCSPVTSYTVAPVANRFHLRLENNAEEMRDEEVHTIPPELRILLDPGHLPALDNPRIR
                     GRGGQNGGFPFPFPDISRRGWKEGGEDGIPRPKDPVIPSIQLFPGPREAEEVPGSMDV
                     ALSVKCDNEKMTVAIEKDSFQARGYSGMELTLLDPTCKAKMNGTHFILESPLNGCGTR
                     HRRSVPYGVVYYNSIVIQVPPPGDSSGWPDGYEDLESGDNGFPGDTDEGDTSFFSRPE
                     TVVFNCSLRQVGNPSSFQDPPNRNVTFNMELYNTDLFLVPSQGVFSVAENGHVFVEVS
                     VTKADQELGFAIQTCFISPYSNPDRMSDYTIIENICPKDESVKFYNPKRVHFPIPQAE
                     IDKKQFSFVFKPIFNTSLLFLQCELTLCTKKEKDPQKLPKCVLPDEACTSLDASMIWA
                     MMQNKKTFTKPLAVIHHEVQFKETGPSIKKPIPVSPPIFHGLDTLTVMGIAFAAFVIG
                     ALLTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIGSTQSTPCSSSSTA"
     misc_feature    1814..2623
                     /gene="TGFBR3"
                     /note="Zona pellucida (ZP) domain; Region: ZP; smart00241"
                     /db_xref="CDD:214579"
ORIGIN      
        1 cccgtccccg cccgcgtgtg tgagggggag cgagtgcgct gggtcggccc gatgggggta
       61 atcgagggtt tcggggacgc cgagcggcgc tttcctcttc ccagagagtg agggagggaa
      121 gtcggcggct ctcgtgcccg gccactttct ctgcgcgatt ccctgagctc cctgcaggag
      181 gagaaagtcc ccggcgggtc cggatggcgt agttgcgccg cggcgcagca gctgccggag
      241 ctcgccgccg ccgggcgcgg ggcggggaaa cttcgttctg ctttgctcca gcttgtggcg
      301 ggtggatctc cgcttgacac accgcatcca aggcaatttg aaaattggca agaaagattt
      361 taaggccact tccaatttgc aaagattatt tataatctga agaactgcag actgaggtga
      421 ctgaacggga cacacttttg gaaaaataaa aatggcttct cattgtgtga ttgccatgtt
      481 tgccctgatg agttcctgtt tagcaactgc aggtccagag cccagcgccc agtgtgaact
      541 gtcgcctgtc aatgcctccc atccagtcca ggccttgatg gagagtttca ccgtcttgtc
      601 gggatgtgcc agcaggggga cggtggggtt gccccaggag gtgcacgtcc tgaacctccg
      661 cactgccgac cagggtcccg gccagccaca gagagaggtc actctgcacc tgaatcccat
      721 ctcctcagtc tacattcacc acaagcctgt cgtgttcctg ctcaactccc cacagcccct
      781 ggtttggcat ctgaagacag agagacttgc aattggcatc tccagacttt tcttggtgtc
      841 tgagggttct gtggtccatt tttcatcagg aaacttctcc ttgtcagcag aaacagagga
      901 aagaagcttc ccgcatggaa atgagcatct gttaaattgg gcccgaaagg aatatggagc
      961 agttacttca ttcactgaac tcaagatagc aagaaacatt tatattaaag tgggggaaga
     1021 tcaagtgttc cctcccacgt gcaacatagg gaagaatttt ctctccctca attaccttgc
     1081 cgggtacctt cagcccaaag ctgcagaagg gtgtgtgata tccagccagc ctcgagataa
     1141 ggaagtacac atcattgagt taatcacccc caactctaac ccctacagtg ctttccaggt
     1201 ggatatcata attgacataa gaccttctcg aaaggatcct gaggtggtca aagatctcat
     1261 cctgatcttg aagtgcaaaa agtctgtcaa ctgggtgatc aaatcttttg atattaaggg
     1321 aaacctgaaa gttatcgctc ctaacagtat tggctttggg aaagaaagtg aaagatccat
     1381 gataatgacc aaatcaataa gagatgacat tccttcaacc caagagagtc tggtcaagtg
     1441 ggctttggac aatggctgta gtccagtaac atcatacaca gtggctcctg tggctaatag
     1501 atttcatctt cggcttgaaa acaatgcaga ggagatgaga gatgaggaag tccataccat
     1561 ccctcctgag ctacggatcc tgctggaccc tggccacctg cctgccctgg acaacccccg
     1621 catccgggga aggggaggcc aaaatggagg tttccccttt cccttccccg atatctccag
     1681 gagaggctgg aaggaagggg gagaagatgg gatccctcgg ccaaaggacc ctgtcatccc
     1741 cagcatacaa ctgtttcctg gtcccagaga ggccgaggag gtgccgggga gcatggatgt
     1801 tgccctgtca gtcaaatgtg acaatgaaaa gatgactgtg gctatagaaa aagattcgtt
     1861 tcaggccaga ggctactctg ggatggagct caccctgttg gatcccacat gcaaggccaa
     1921 gatgaatggc acccacttca ttttggagtc tcccctgaat ggctgtggga ctcggcaccg
     1981 gagatcagtc ccttatggtg tggtttacta caactccatt gtaatacagg ttccaccccc
     2041 tggggatagt agtggctggc cagatggtta tgaagatttg gagtcaggtg ataatggatt
     2101 tccgggagat acggatgaag gagatacttc cttcttcagc cgacctgaaa ctgtggtgtt
     2161 taattgtagc ctgcggcagg tggggaatcc cagtagcttc caggacccac ccaacagaaa
     2221 tgtcaccttc aacatggagt tgtacaacac tgacctcttt ctggtgccct cccaaggcgt
     2281 cttctctgtg gcagagaacg gacatgtttt tgttgaggtg tccgtcacca aggctgacca
     2341 agaactggga tttgccatcc agacttgctt tatctctcca tattcgaacc ctgataggat
     2401 gtctgattat actatcattg agaacatttg tcctaaagat gaatctgtga aattctacaa
     2461 tcccaagaga gtgcactttc ctatcccgca agccgagata gataagaaac aattcagctt
     2521 tgtctttaag cccatcttca acacctccct gctctttcta cagtgtgagc tcacattgtg
     2581 taccaaaaag gaaaaggacc cccagaagtt acctaagtgt gtgcttcctg atgaagcctg
     2641 cacctcgctg gatgcctcga tgatctgggc catgatgcag aataagaaga cgttcaccaa
     2701 gcccctcgct gtgatccacc atgaagtaca atttaaagaa acaggtccaa gcattaagaa
     2761 accgattcca gtttctccac cgatattcca tggtctggac accctaaccg tgatgggcat
     2821 tgccttcgca gcatttgtga ttggagcact gctgacaggg gccttatggt acatctattc
     2881 tcacacagga gagactgcag gaaggcagca ggtccccacc tccccaccag cctcggaaaa
     2941 cagcagcgct gcgcacagca tcggtagcac gcagagcacg ccctgctcca gcagcagcac
     3001 agcctagcct gccccaccca ccgccaaggg caggactggg agcccacccc tgggcccaga
     3061 ttccagactc gggaggctag attgtgggtc cctggtaaag agagtgaatt tcaatatagc
     3121 gatcacctgt tgtgttcacc ccccacccag ggctaatata aatgtgaccc ctgggcttct
     3181 gtaacacact agattcatgt gagaaagcta aggtggtggc cctctccacc agcccctcac
     3241 aggcttgggg gttttcaatg tgaaacacat gccagttttt aaaatgctgc tttgtccagg
     3301 taagaacatc cgtaatttgg agccctgcgt tttacccagt cgcaaagggt tggtaaaagg
     3361 ataatagcca gatagtagaa ccagcgagca gatgtggcca aagattcttt tataactgaa
     3421 ctaagatgta aaacagcaga aatgcttcga gactttctca gtgtgttcct ccatttctag
     3481 tttgcacctt ctggatgcac acttctcacc ttgctgccac acttgtgggg actgctgtgt
     3541 cggcttgatg ggtgctgccc tcacggactg catcctgaca cacctcaagg caacattcct
     3601 ttcttgtgcc ctgggccaaa accagtgctg atttccttat cagcttcctc cttctcccca
     3661 cattcacaca ccaactgcaa aaacgtctta ttgtaaattt tgcatttctt tataggcata
     3721 tagaaattga aaatggccaa aatctgagac tgaagatttg tgcccattta tgacaatgtg
     3781 ttctattaca ttaatgtgta aatgggggca aaattcggtt gtaaagttga ggaggaattt
     3841 gcacagtgat atatgtacca gtacaagtat ataatacgtc atttggcaca ttcgtttttt
     3901 tcagtttaag aagagaaaat tcattcccat ttaaaaaatg tcctacacct tcagagttgg
     3961 aacttattct taaatatatt tgagagaatt agtgtttcca tgcaaaacat gtcaaccttt
     4021 tcactagacc cttttgtaaa cgccaagctc ttgtaagatg caagtgtatg gcagactgtt
     4081 ggttatctga acagtgtcac cagttctgcc aagaaactga tgagatacgg aaaaagacac
     4141 tcatttggat tgctttagtt ctcttgcctt cagtataccc ccaaaactca aaaagaattt
     4201 gaggtgaatt ttattaaaat ggaataatat gataccactt tgcagctaaa ataagctcaa
     4261 ctgatacctc tatgttaaaa aaaggtgccg gaggaaaatg tccatgccaa atcatttact
     4321 cctgaaggta acttcattgc aaataaatat tattctcttt ccagaattct cccaaacaac
     4381 tcagaagtct acaaatagaa caggctagat tctaccccca cactactcat aagcaaatct
     4441 aactgctctt aaaataagga agttgtgcct ggttctctgt gaatggaatc ttaagtagga
     4501 aatgttgatg tcaccggaga cctgagggca gtgtctacaa ggcaaatagg tagagattga
     4561 caatggttaa cccatcatgg agtcatgctc tgattgattt gatagttata gacattcaat
     4621 caggatgatt ttaatcaaaa cagattgtgg gctaagattt ccaggctatc tatattgata
     4681 attttgcaga ttttcacaga caaatgaaga taggagatta gaaaaacttt tgccttcagt
     4741 taactttttt taacataaag gtatgagtgg aggacctaga ttatgctacc tgtgtttgaa
     4801 aataatgcgc tttgcctaac cttcagcaga atgtattgtt ttagcatatt ctatgtataa
     4861 aaaagtttaa agatgtcttc aaagaagact agagtcttta agtcacttat agctatattt
     4921 tactacaaaa atctgtgtat aaagatatat ttaagtgttt tagataaatt taagttactc
     4981 catatgaaat gtttaatttc agttactgtg aattcttttg atcagttctt tgctttttaa
     5041 aaatccctat ccatcctgtt aaaaagatga ttaactatta agaggtatta aaaggtccaa
     5101 ttcttagatg gacagggtta aaaccttttg taatatattt aaatgtatat ttttgagaga
     5161 gatgctacat tgccgatgat tttataaata atttaaaatt aatttacaaa tttatgggtg
     5221 caaaccaaaa gattttaaaa gaaagaggag aaatcaactt ttatttgttt gggtcttact
     5281 atccagaagt attattcaga tcaagaaatt catgtggatg aaacccaatc ctgtgttaat
     5341 tgccgagtga acatcattaa gtatttctga aatgtttcta aaaagtgaac atttttttaa
     5401 aattgtgttt tctccctagc ttcctgttac agcatttcca gttgcttcat atttcacagt
     5461 tttaatacaa agtataagct ctactttata atacatccta caagtttctt taaaactgtt
     5521 tttatattcc agttaaattc ctctatctgc aaagtcttct gttacttctg caggttacac
     5581 ccttcctttg cagaggccat tttgttttat ttatttgatg ctaaagctat tgttgaaatg
     5641 ccctaaactc gaaggcagag tgtgtaatac cctatagctt ttcaccgtgt ggtgtgtacc
     5701 agcccgttgc tctgtatttg gaaagtcaga ttccttctga gtaagctgtt tctatagcat
     5761 tttctaaaca aaacaaaagg tcttttcctt gtctgtaatg agattgtaaa cccgtttcct
     5821 gtgtgtgtgc tctgttgtgg gcgtgcttgt gagtgtgtga gggggtgtgc acctgcgtgc
     5881 cggttttttt gtactgtaac tacctcatga tttgagtgat ggttgtactg ctgattgtgt
     5941 taacagagca cattttgttg ggtgactctt gcgtgtgatt tttttttcct gtttgttttc
     6001 cctgggggtt gttcatgaaa ctgacagatg tttttctgaa aaggactatt atcagtttcc
     6061 aaatacaata cttctctctt ctggtttttc ctgaatgagc ctgattttgt tgctgttttt
     6121 catcatctat gagggtaaaa agagtaccct gaaaatccct gtggccagtt tgagcacccc
     6181 tgttgtactc ttttctctgt tcagtatgtc gtcaatctta tgaccatgct tagatgtata
     6241 gttttgataa ccacagtttt aagtccttta tctgtgcata ataaaaagat atatatcaat
     6301 tattaa
//
LOCUS       XM_032648917            6304 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming growth factor beta receptor
            3 (TGFBR3), transcript variant X2, mRNA.
ACCESSION   XM_032648917
VERSION     XM_032648917.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6304
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6304
                     /gene="TGFBR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762156"
     CDS             453..3005
                     /gene="TGFBR3"
                     /codon_start=1
                     /product="transforming growth factor beta receptor type 3
                     isoform X2"
                     /protein_id="XP_032504808.1"
                     /db_xref="GeneID:116762156"
                     /translation="MASHCVIAMFALMSSCLATAGPEPSAQCELSPVNASHPVQALME
                     SFTVLSGCASRGTVGLPQEVHVLNLRTADQGPGQPQREVTLHLNPISSVYIHHKPVVF
                     LLNSPQPLVWHLKTERLAIGISRLFLVSEGSVVHFSSGNFSLSAETEERSFPHGNEHL
                     LNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPTCNIGKNFLSLNYLAGYLQPKAA
                     EGCVISSQPRDKEVHIIELITPNSNPYSAFQVDIIIDIRPSRKDPEVVKDLILILKCK
                     KSVNWVIKSFDIKGNLKVIAPNSIGFGKESERSMIMTKSIRDDIPSTQESLVKWALDN
                     GCSPVTSYTVAPVANRFHLRLENNEEMRDEEVHTIPPELRILLDPGHLPALDNPRIRG
                     RGGQNGGFPFPFPDISRRGWKEGGEDGIPRPKDPVIPSIQLFPGPREAEEVPGSMDVA
                     LSVKCDNEKMTVAIEKDSFQARGYSGMELTLLDPTCKAKMNGTHFILESPLNGCGTRH
                     RRSVPYGVVYYNSIVIQVPPPGDSSGWPDGYEDLESGDNGFPGDTDEGDTSFFSRPET
                     VVFNCSLRQVGNPSSFQDPPNRNVTFNMELYNTDLFLVPSQGVFSVAENGHVFVEVSV
                     TKADQELGFAIQTCFISPYSNPDRMSDYTIIENICPKDESVKFYNPKRVHFPIPQAEI
                     DKKQFSFVFKPIFNTSLLFLQCELTLCTKKEKDPQKLPKCVLPDEACTSLDASMIWAM
                     MQNKKTFTKPLAVIHHEVQFKETGPSIKKPIPVSPPIFHGLDTLTVMGIAFAAFVIGA
                     LLTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIGSTQSTPCSSSSTA"
     misc_feature    1812..2621
                     /gene="TGFBR3"
                     /note="Zona pellucida (ZP) domain; Region: ZP; smart00241"
                     /db_xref="CDD:214579"
ORIGIN      
        1 gcccgtcccc gcccgcgtgt gtgaggggga gcgagtgcgc tgggtcggcc cgatgggggt
       61 aatcgagggt ttcggggacg ccgagcggcg ctttcctctt cccagagagt gagggaggga
      121 agtcggcggc tctcgtgccc ggccactttc tctgcgcgat tccctgagct ccctgcagga
      181 ggagaaagtc cccggcgggt ccggatggcg tagttgcgcc gcggcgcagc agctgccgga
      241 gctcgccgcc gccgggcgcg gggcggggaa acttcgttct gctttgctcc agcttgtggc
      301 gggtggatct ccgcttgaca caccgcatcc aaggcaattt gaaaattggc aagaaagatt
      361 ttaaggccac ttccaatttg caaagattat ttataatctg aagaactgca gactgaggtg
      421 actgaacggg acacactttt ggaaaaataa aaatggcttc tcattgtgtg attgccatgt
      481 ttgccctgat gagttcctgt ttagcaactg caggtccaga gcccagcgcc cagtgtgaac
      541 tgtcgcctgt caatgcctcc catccagtcc aggccttgat ggagagtttc accgtcttgt
      601 cgggatgtgc cagcaggggg acggtggggt tgccccagga ggtgcacgtc ctgaacctcc
      661 gcactgccga ccagggtccc ggccagccac agagagaggt cactctgcac ctgaatccca
      721 tctcctcagt ctacattcac cacaagcctg tcgtgttcct gctcaactcc ccacagcccc
      781 tggtttggca tctgaagaca gagagacttg caattggcat ctccagactt ttcttggtgt
      841 ctgagggttc tgtggtccat ttttcatcag gaaacttctc cttgtcagca gaaacagagg
      901 aaagaagctt cccgcatgga aatgagcatc tgttaaattg ggcccgaaag gaatatggag
      961 cagttacttc attcactgaa ctcaagatag caagaaacat ttatattaaa gtgggggaag
     1021 atcaagtgtt ccctcccacg tgcaacatag ggaagaattt tctctccctc aattaccttg
     1081 ccgggtacct tcagcccaaa gctgcagaag ggtgtgtgat atccagccag cctcgagata
     1141 aggaagtaca catcattgag ttaatcaccc ccaactctaa cccctacagt gctttccagg
     1201 tggatatcat aattgacata agaccttctc gaaaggatcc tgaggtggtc aaagatctca
     1261 tcctgatctt gaagtgcaaa aagtctgtca actgggtgat caaatctttt gatattaagg
     1321 gaaacctgaa agttatcgct cctaacagta ttggctttgg gaaagaaagt gaaagatcca
     1381 tgataatgac caaatcaata agagatgaca ttccttcaac ccaagagagt ctggtcaagt
     1441 gggctttgga caatggctgt agtccagtaa catcatacac agtggctcct gtggctaata
     1501 gatttcatct tcggcttgaa aacaatgagg agatgagaga tgaggaagtc cataccatcc
     1561 ctcctgagct acggatcctg ctggaccctg gccacctgcc tgccctggac aacccccgca
     1621 tccggggaag gggaggccaa aatggaggtt tcccctttcc cttccccgat atctccagga
     1681 gaggctggaa ggaaggggga gaagatggga tccctcggcc aaaggaccct gtcatcccca
     1741 gcatacaact gtttcctggt cccagagagg ccgaggaggt gccggggagc atggatgttg
     1801 ccctgtcagt caaatgtgac aatgaaaaga tgactgtggc tatagaaaaa gattcgtttc
     1861 aggccagagg ctactctggg atggagctca ccctgttgga tcccacatgc aaggccaaga
     1921 tgaatggcac ccacttcatt ttggagtctc ccctgaatgg ctgtgggact cggcaccgga
     1981 gatcagtccc ttatggtgtg gtttactaca actccattgt aatacaggtt ccaccccctg
     2041 gggatagtag tggctggcca gatggttatg aagatttgga gtcaggtgat aatggatttc
     2101 cgggagatac ggatgaagga gatacttcct tcttcagccg acctgaaact gtggtgttta
     2161 attgtagcct gcggcaggtg gggaatccca gtagcttcca ggacccaccc aacagaaatg
     2221 tcaccttcaa catggagttg tacaacactg acctctttct ggtgccctcc caaggcgtct
     2281 tctctgtggc agagaacgga catgtttttg ttgaggtgtc cgtcaccaag gctgaccaag
     2341 aactgggatt tgccatccag acttgcttta tctctccata ttcgaaccct gataggatgt
     2401 ctgattatac tatcattgag aacatttgtc ctaaagatga atctgtgaaa ttctacaatc
     2461 ccaagagagt gcactttcct atcccgcaag ccgagataga taagaaacaa ttcagctttg
     2521 tctttaagcc catcttcaac acctccctgc tctttctaca gtgtgagctc acattgtgta
     2581 ccaaaaagga aaaggacccc cagaagttac ctaagtgtgt gcttcctgat gaagcctgca
     2641 cctcgctgga tgcctcgatg atctgggcca tgatgcagaa taagaagacg ttcaccaagc
     2701 ccctcgctgt gatccaccat gaagtacaat ttaaagaaac aggtccaagc attaagaaac
     2761 cgattccagt ttctccaccg atattccatg gtctggacac cctaaccgtg atgggcattg
     2821 ccttcgcagc atttgtgatt ggagcactgc tgacaggggc cttatggtac atctattctc
     2881 acacaggaga gactgcagga aggcagcagg tccccacctc cccaccagcc tcggaaaaca
     2941 gcagcgctgc gcacagcatc ggtagcacgc agagcacgcc ctgctccagc agcagcacag
     3001 cctagcctgc cccacccacc gccaagggca ggactgggag cccacccctg ggcccagatt
     3061 ccagactcgg gaggctagat tgtgggtccc tggtaaagag agtgaatttc aatatagcga
     3121 tcacctgttg tgttcacccc ccacccaggg ctaatataaa tgtgacccct gggcttctgt
     3181 aacacactag attcatgtga gaaagctaag gtggtggccc tctccaccag cccctcacag
     3241 gcttgggggt tttcaatgtg aaacacatgc cagtttttaa aatgctgctt tgtccaggta
     3301 agaacatccg taatttggag ccctgcgttt tacccagtcg caaagggttg gtaaaaggat
     3361 aatagccaga tagtagaacc agcgagcaga tgtggccaaa gattctttta taactgaact
     3421 aagatgtaaa acagcagaaa tgcttcgaga ctttctcagt gtgttcctcc atttctagtt
     3481 tgcaccttct ggatgcacac ttctcacctt gctgccacac ttgtggggac tgctgtgtcg
     3541 gcttgatggg tgctgccctc acggactgca tcctgacaca cctcaaggca acattccttt
     3601 cttgtgccct gggccaaaac cagtgctgat ttccttatca gcttcctcct tctccccaca
     3661 ttcacacacc aactgcaaaa acgtcttatt gtaaattttg catttcttta taggcatata
     3721 gaaattgaaa atggccaaaa tctgagactg aagatttgtg cccatttatg acaatgtgtt
     3781 ctattacatt aatgtgtaaa tgggggcaaa attcggttgt aaagttgagg aggaatttgc
     3841 acagtgatat atgtaccagt acaagtatat aatacgtcat ttggcacatt cgtttttttc
     3901 agtttaagaa gagaaaattc attcccattt aaaaaatgtc ctacaccttc agagttggaa
     3961 cttattctta aatatatttg agagaattag tgtttccatg caaaacatgt caaccttttc
     4021 actagaccct tttgtaaacg ccaagctctt gtaagatgca agtgtatggc agactgttgg
     4081 ttatctgaac agtgtcacca gttctgccaa gaaactgatg agatacggaa aaagacactc
     4141 atttggattg ctttagttct cttgccttca gtataccccc aaaactcaaa aagaatttga
     4201 ggtgaatttt attaaaatgg aataatatga taccactttg cagctaaaat aagctcaact
     4261 gatacctcta tgttaaaaaa aggtgccgga ggaaaatgtc catgccaaat catttactcc
     4321 tgaaggtaac ttcattgcaa ataaatatta ttctctttcc agaattctcc caaacaactc
     4381 agaagtctac aaatagaaca ggctagattc tacccccaca ctactcataa gcaaatctaa
     4441 ctgctcttaa aataaggaag ttgtgcctgg ttctctgtga atggaatctt aagtaggaaa
     4501 tgttgatgtc accggagacc tgagggcagt gtctacaagg caaataggta gagattgaca
     4561 atggttaacc catcatggag tcatgctctg attgatttga tagttataga cattcaatca
     4621 ggatgatttt aatcaaaaca gattgtgggc taagatttcc aggctatcta tattgataat
     4681 tttgcagatt ttcacagaca aatgaagata ggagattaga aaaacttttg ccttcagtta
     4741 acttttttta acataaaggt atgagtggag gacctagatt atgctacctg tgtttgaaaa
     4801 taatgcgctt tgcctaacct tcagcagaat gtattgtttt agcatattct atgtataaaa
     4861 aagtttaaag atgtcttcaa agaagactag agtctttaag tcacttatag ctatatttta
     4921 ctacaaaaat ctgtgtataa agatatattt aagtgtttta gataaattta agttactcca
     4981 tatgaaatgt ttaatttcag ttactgtgaa ttcttttgat cagttctttg ctttttaaaa
     5041 atccctatcc atcctgttaa aaagatgatt aactattaag aggtattaaa aggtccaatt
     5101 cttagatgga cagggttaaa accttttgta atatatttaa atgtatattt ttgagagaga
     5161 tgctacattg ccgatgattt tataaataat ttaaaattaa tttacaaatt tatgggtgca
     5221 aaccaaaaga ttttaaaaga aagaggagaa atcaactttt atttgtttgg gtcttactat
     5281 ccagaagtat tattcagatc aagaaattca tgtggatgaa acccaatcct gtgttaattg
     5341 ccgagtgaac atcattaagt atttctgaaa tgtttctaaa aagtgaacat ttttttaaaa
     5401 ttgtgttttc tccctagctt cctgttacag catttccagt tgcttcatat ttcacagttt
     5461 taatacaaag tataagctct actttataat acatcctaca agtttcttta aaactgtttt
     5521 tatattccag ttaaattcct ctatctgcaa agtcttctgt tacttctgca ggttacaccc
     5581 ttcctttgca gaggccattt tgttttattt atttgatgct aaagctattg ttgaaatgcc
     5641 ctaaactcga aggcagagtg tgtaataccc tatagctttt caccgtgtgg tgtgtaccag
     5701 cccgttgctc tgtatttgga aagtcagatt ccttctgagt aagctgtttc tatagcattt
     5761 tctaaacaaa acaaaaggtc ttttccttgt ctgtaatgag attgtaaacc cgtttcctgt
     5821 gtgtgtgctc tgttgtgggc gtgcttgtga gtgtgtgagg gggtgtgcac ctgcgtgccg
     5881 gtttttttgt actgtaacta cctcatgatt tgagtgatgg ttgtactgct gattgtgtta
     5941 acagagcaca ttttgttggg tgactcttgc gtgtgatttt tttttcctgt ttgttttccc
     6001 tgggggttgt tcatgaaact gacagatgtt tttctgaaaa ggactattat cagtttccaa
     6061 atacaatact tctctcttct ggtttttcct gaatgagcct gattttgttg ctgtttttca
     6121 tcatctatga gggtaaaaag agtaccctga aaatccctgt ggccagtttg agcacccctg
     6181 ttgtactctt ttctctgttc agtatgtcgt caatcttatg accatgctta gatgtatagt
     6241 tttgataacc acagttttaa gtcctttatc tgtgcataat aaaaagatat atatcaatta
     6301 ttaa
//
LOCUS       XM_032648923            6301 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming growth factor beta receptor
            3 (TGFBR3), transcript variant X3, mRNA.
ACCESSION   XM_032648923
VERSION     XM_032648923.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6301
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6301
                     /gene="TGFBR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762156"
     CDS             453..3002
                     /gene="TGFBR3"
                     /codon_start=1
                     /product="transforming growth factor beta receptor type 3
                     isoform X3"
                     /protein_id="XP_032504814.1"
                     /db_xref="GeneID:116762156"
                     /translation="MASHCVIAMFALMSSCLATAGPEPSAQCELSPVNASHPVQALME
                     SFTVLSGCASRGTVGLPQEVHVLNLRTADQGPGQPQREVTLHLNPISSVYIHHKPVVF
                     LLNSPQPLVWHLKTERLAIGISRLFLVSEGSVVHFSSGNFSLSAETEERSFPHGNEHL
                     LNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPTCNIGKNFLSLNYLAGYLQPKAA
                     EGCVISSQPRDKEVHIIELITPNSNPYSAFQVDIIIDIRPSRKDPEVVKDLILILKCK
                     KSVNWVIKSFDIKGNLKVIAPNSIGFGKESERSMIMTKSIRDDIPSTQESLVKWALDN
                     GCSPVTSYTVAPVANRFHLRLENNAEEMRDEEVHTIPPELRILLDPGHLPALDNPRIR
                     GRGGQNGGFPFPFPDISRRGWKEGGEDGIPRPKDPVIPSIQLFPGPREAEEVPGSMDV
                     ALSVKCDNEKMTVAIEKDSFQARGYSGMELTLLDPTCKAKMNGTHFILESPLNGCGTR
                     HRRSVPYGVVYYNSIVIQVPPPGDSSGWPDGYEDLESGDNGFPGDTDEGDTSFFSRPE
                     TVVFNCSLRQVGNPSSFQDPPNRNVTFNMELYNTDLFLVPSQGVFSVAENGHVFVEVS
                     VTKADQELGFAIQTCFISPYSNPDRMSDYTIIENICPKDESVKFYNPKRVHFPIPQAE
                     IDKKQFSFVFKPIFNTSLLFLQCELTLCTKKEKDPQKLPKCVLPDEACTSLDASMIWA
                     MMQNKKTFTKPLAVIHHEVQFKGPSIKKPIPVSPPIFHGLDTLTVMGIAFAAFVIGAL
                     LTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIGSTQSTPCSSSSTA"
     misc_feature    1815..2624
                     /gene="TGFBR3"
                     /note="Zona pellucida (ZP) domain; Region: ZP; smart00241"
                     /db_xref="CDD:214579"
ORIGIN      
        1 gcccgtcccc gcccgcgtgt gtgaggggga gcgagtgcgc tgggtcggcc cgatgggggt
       61 aatcgagggt ttcggggacg ccgagcggcg ctttcctctt cccagagagt gagggaggga
      121 agtcggcggc tctcgtgccc ggccactttc tctgcgcgat tccctgagct ccctgcagga
      181 ggagaaagtc cccggcgggt ccggatggcg tagttgcgcc gcggcgcagc agctgccgga
      241 gctcgccgcc gccgggcgcg gggcggggaa acttcgttct gctttgctcc agcttgtggc
      301 gggtggatct ccgcttgaca caccgcatcc aaggcaattt gaaaattggc aagaaagatt
      361 ttaaggccac ttccaatttg caaagattat ttataatctg aagaactgca gactgaggtg
      421 actgaacggg acacactttt ggaaaaataa aaatggcttc tcattgtgtg attgccatgt
      481 ttgccctgat gagttcctgt ttagcaactg caggtccaga gcccagcgcc cagtgtgaac
      541 tgtcgcctgt caatgcctcc catccagtcc aggccttgat ggagagtttc accgtcttgt
      601 cgggatgtgc cagcaggggg acggtggggt tgccccagga ggtgcacgtc ctgaacctcc
      661 gcactgccga ccagggtccc ggccagccac agagagaggt cactctgcac ctgaatccca
      721 tctcctcagt ctacattcac cacaagcctg tcgtgttcct gctcaactcc ccacagcccc
      781 tggtttggca tctgaagaca gagagacttg caattggcat ctccagactt ttcttggtgt
      841 ctgagggttc tgtggtccat ttttcatcag gaaacttctc cttgtcagca gaaacagagg
      901 aaagaagctt cccgcatgga aatgagcatc tgttaaattg ggcccgaaag gaatatggag
      961 cagttacttc attcactgaa ctcaagatag caagaaacat ttatattaaa gtgggggaag
     1021 atcaagtgtt ccctcccacg tgcaacatag ggaagaattt tctctccctc aattaccttg
     1081 ccgggtacct tcagcccaaa gctgcagaag ggtgtgtgat atccagccag cctcgagata
     1141 aggaagtaca catcattgag ttaatcaccc ccaactctaa cccctacagt gctttccagg
     1201 tggatatcat aattgacata agaccttctc gaaaggatcc tgaggtggtc aaagatctca
     1261 tcctgatctt gaagtgcaaa aagtctgtca actgggtgat caaatctttt gatattaagg
     1321 gaaacctgaa agttatcgct cctaacagta ttggctttgg gaaagaaagt gaaagatcca
     1381 tgataatgac caaatcaata agagatgaca ttccttcaac ccaagagagt ctggtcaagt
     1441 gggctttgga caatggctgt agtccagtaa catcatacac agtggctcct gtggctaata
     1501 gatttcatct tcggcttgaa aacaatgcag aggagatgag agatgaggaa gtccatacca
     1561 tccctcctga gctacggatc ctgctggacc ctggccacct gcctgccctg gacaaccccc
     1621 gcatccgggg aaggggaggc caaaatggag gtttcccctt tcccttcccc gatatctcca
     1681 ggagaggctg gaaggaaggg ggagaagatg ggatccctcg gccaaaggac cctgtcatcc
     1741 ccagcataca actgtttcct ggtcccagag aggccgagga ggtgccgggg agcatggatg
     1801 ttgccctgtc agtcaaatgt gacaatgaaa agatgactgt ggctatagaa aaagattcgt
     1861 ttcaggccag aggctactct gggatggagc tcaccctgtt ggatcccaca tgcaaggcca
     1921 agatgaatgg cacccacttc attttggagt ctcccctgaa tggctgtggg actcggcacc
     1981 ggagatcagt cccttatggt gtggtttact acaactccat tgtaatacag gttccacccc
     2041 ctggggatag tagtggctgg ccagatggtt atgaagattt ggagtcaggt gataatggat
     2101 ttccgggaga tacggatgaa ggagatactt ccttcttcag ccgacctgaa actgtggtgt
     2161 ttaattgtag cctgcggcag gtggggaatc ccagtagctt ccaggaccca cccaacagaa
     2221 atgtcacctt caacatggag ttgtacaaca ctgacctctt tctggtgccc tcccaaggcg
     2281 tcttctctgt ggcagagaac ggacatgttt ttgttgaggt gtccgtcacc aaggctgacc
     2341 aagaactggg atttgccatc cagacttgct ttatctctcc atattcgaac cctgatagga
     2401 tgtctgatta tactatcatt gagaacattt gtcctaaaga tgaatctgtg aaattctaca
     2461 atcccaagag agtgcacttt cctatcccgc aagccgagat agataagaaa caattcagct
     2521 ttgtctttaa gcccatcttc aacacctccc tgctctttct acagtgtgag ctcacattgt
     2581 gtaccaaaaa ggaaaaggac ccccagaagt tacctaagtg tgtgcttcct gatgaagcct
     2641 gcacctcgct ggatgcctcg atgatctggg ccatgatgca gaataagaag acgttcacca
     2701 agcccctcgc tgtgatccac catgaagtac aatttaaagg tccaagcatt aagaaaccga
     2761 ttccagtttc tccaccgata ttccatggtc tggacaccct aaccgtgatg ggcattgcct
     2821 tcgcagcatt tgtgattgga gcactgctga caggggcctt atggtacatc tattctcaca
     2881 caggagagac tgcaggaagg cagcaggtcc ccacctcccc accagcctcg gaaaacagca
     2941 gcgctgcgca cagcatcggt agcacgcaga gcacgccctg ctccagcagc agcacagcct
     3001 agcctgcccc acccaccgcc aagggcagga ctgggagccc acccctgggc ccagattcca
     3061 gactcgggag gctagattgt gggtccctgg taaagagagt gaatttcaat atagcgatca
     3121 cctgttgtgt tcacccccca cccagggcta atataaatgt gacccctggg cttctgtaac
     3181 acactagatt catgtgagaa agctaaggtg gtggccctct ccaccagccc ctcacaggct
     3241 tgggggtttt caatgtgaaa cacatgccag tttttaaaat gctgctttgt ccaggtaaga
     3301 acatccgtaa tttggagccc tgcgttttac ccagtcgcaa agggttggta aaaggataat
     3361 agccagatag tagaaccagc gagcagatgt ggccaaagat tcttttataa ctgaactaag
     3421 atgtaaaaca gcagaaatgc ttcgagactt tctcagtgtg ttcctccatt tctagtttgc
     3481 accttctgga tgcacacttc tcaccttgct gccacacttg tggggactgc tgtgtcggct
     3541 tgatgggtgc tgccctcacg gactgcatcc tgacacacct caaggcaaca ttcctttctt
     3601 gtgccctggg ccaaaaccag tgctgatttc cttatcagct tcctccttct ccccacattc
     3661 acacaccaac tgcaaaaacg tcttattgta aattttgcat ttctttatag gcatatagaa
     3721 attgaaaatg gccaaaatct gagactgaag atttgtgccc atttatgaca atgtgttcta
     3781 ttacattaat gtgtaaatgg gggcaaaatt cggttgtaaa gttgaggagg aatttgcaca
     3841 gtgatatatg taccagtaca agtatataat acgtcatttg gcacattcgt ttttttcagt
     3901 ttaagaagag aaaattcatt cccatttaaa aaatgtccta caccttcaga gttggaactt
     3961 attcttaaat atatttgaga gaattagtgt ttccatgcaa aacatgtcaa ccttttcact
     4021 agaccctttt gtaaacgcca agctcttgta agatgcaagt gtatggcaga ctgttggtta
     4081 tctgaacagt gtcaccagtt ctgccaagaa actgatgaga tacggaaaaa gacactcatt
     4141 tggattgctt tagttctctt gccttcagta tacccccaaa actcaaaaag aatttgaggt
     4201 gaattttatt aaaatggaat aatatgatac cactttgcag ctaaaataag ctcaactgat
     4261 acctctatgt taaaaaaagg tgccggagga aaatgtccat gccaaatcat ttactcctga
     4321 aggtaacttc attgcaaata aatattattc tctttccaga attctcccaa acaactcaga
     4381 agtctacaaa tagaacaggc tagattctac ccccacacta ctcataagca aatctaactg
     4441 ctcttaaaat aaggaagttg tgcctggttc tctgtgaatg gaatcttaag taggaaatgt
     4501 tgatgtcacc ggagacctga gggcagtgtc tacaaggcaa ataggtagag attgacaatg
     4561 gttaacccat catggagtca tgctctgatt gatttgatag ttatagacat tcaatcagga
     4621 tgattttaat caaaacagat tgtgggctaa gatttccagg ctatctatat tgataatttt
     4681 gcagattttc acagacaaat gaagatagga gattagaaaa acttttgcct tcagttaact
     4741 ttttttaaca taaaggtatg agtggaggac ctagattatg ctacctgtgt ttgaaaataa
     4801 tgcgctttgc ctaaccttca gcagaatgta ttgttttagc atattctatg tataaaaaag
     4861 tttaaagatg tcttcaaaga agactagagt ctttaagtca cttatagcta tattttacta
     4921 caaaaatctg tgtataaaga tatatttaag tgttttagat aaatttaagt tactccatat
     4981 gaaatgttta atttcagtta ctgtgaattc ttttgatcag ttctttgctt tttaaaaatc
     5041 cctatccatc ctgttaaaaa gatgattaac tattaagagg tattaaaagg tccaattctt
     5101 agatggacag ggttaaaacc ttttgtaata tatttaaatg tatatttttg agagagatgc
     5161 tacattgccg atgattttat aaataattta aaattaattt acaaatttat gggtgcaaac
     5221 caaaagattt taaaagaaag aggagaaatc aacttttatt tgtttgggtc ttactatcca
     5281 gaagtattat tcagatcaag aaattcatgt ggatgaaacc caatcctgtg ttaattgccg
     5341 agtgaacatc attaagtatt tctgaaatgt ttctaaaaag tgaacatttt tttaaaattg
     5401 tgttttctcc ctagcttcct gttacagcat ttccagttgc ttcatatttc acagttttaa
     5461 tacaaagtat aagctctact ttataataca tcctacaagt ttctttaaaa ctgtttttat
     5521 attccagtta aattcctcta tctgcaaagt cttctgttac ttctgcaggt tacacccttc
     5581 ctttgcagag gccattttgt tttatttatt tgatgctaaa gctattgttg aaatgcccta
     5641 aactcgaagg cagagtgtgt aataccctat agcttttcac cgtgtggtgt gtaccagccc
     5701 gttgctctgt atttggaaag tcagattcct tctgagtaag ctgtttctat agcattttct
     5761 aaacaaaaca aaaggtcttt tccttgtctg taatgagatt gtaaacccgt ttcctgtgtg
     5821 tgtgctctgt tgtgggcgtg cttgtgagtg tgtgaggggg tgtgcacctg cgtgccggtt
     5881 tttttgtact gtaactacct catgatttga gtgatggttg tactgctgat tgtgttaaca
     5941 gagcacattt tgttgggtga ctcttgcgtg tgattttttt ttcctgtttg ttttccctgg
     6001 gggttgttca tgaaactgac agatgttttt ctgaaaagga ctattatcag tttccaaata
     6061 caatacttct ctcttctggt ttttcctgaa tgagcctgat tttgttgctg tttttcatca
     6121 tctatgaggg taaaaagagt accctgaaaa tccctgtggc cagtttgagc acccctgttg
     6181 tactcttttc tctgttcagt atgtcgtcaa tcttatgacc atgcttagat gtatagtttt
     6241 gataaccaca gttttaagtc ctttatctgt gcataataaa aagatatata tcaattatta
     6301 a
//
LOCUS       XM_032648927            6299 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming growth factor beta receptor
            3 (TGFBR3), transcript variant X4, mRNA.
ACCESSION   XM_032648927
VERSION     XM_032648927.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6299
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6299
                     /gene="TGFBR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762156"
     CDS             454..3000
                     /gene="TGFBR3"
                     /codon_start=1
                     /product="transforming growth factor beta receptor type 3
                     isoform X4"
                     /protein_id="XP_032504818.1"
                     /db_xref="GeneID:116762156"
                     /translation="MASHCVIAMFALMSSCLATAGPEPSAQCELSPVNASHPVQALME
                     SFTVLSGCASRGTVGLPQEVHVLNLRTADQGPGQPQREVTLHLNPISSVYIHHKPVVF
                     LLNSPQPLVWHLKTERLAIGISRLFLVSEGSVVHFSSGNFSLSAETEERSFPHGNEHL
                     LNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPTCNIGKNFLSLNYLAGYLQPKAA
                     EGCVISSQPRDKEVHIIELITPNSNPYSAFQVDIIIDIRPSRKDPEVVKDLILILKCK
                     KSVNWVIKSFDIKGNLKVIAPNSIGFGKESERSMIMTKSIRDDIPSTQESLVKWALDN
                     GCSPVTSYTVAPVANRFHLRLENNEEMRDEEVHTIPPELRILLDPGHLPALDNPRIRG
                     RGGQNGGFPFPFPDISRRGWKEGGEDGIPRPKDPVIPSIQLFPGPREAEEVPGSMDVA
                     LSVKCDNEKMTVAIEKDSFQARGYSGMELTLLDPTCKAKMNGTHFILESPLNGCGTRH
                     RRSVPYGVVYYNSIVIQVPPPGDSSGWPDGYEDLESGDNGFPGDTDEGDTSFFSRPET
                     VVFNCSLRQVGNPSSFQDPPNRNVTFNMELYNTDLFLVPSQGVFSVAENGHVFVEVSV
                     TKADQELGFAIQTCFISPYSNPDRMSDYTIIENICPKDESVKFYNPKRVHFPIPQAEI
                     DKKQFSFVFKPIFNTSLLFLQCELTLCTKKEKDPQKLPKCVLPDEACTSLDASMIWAM
                     MQNKKTFTKPLAVIHHEVQFKGPSIKKPIPVSPPIFHGLDTLTVMGIAFAAFVIGALL
                     TGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIGSTQSTPCSSSSTA"
     misc_feature    1813..2622
                     /gene="TGFBR3"
                     /note="Zona pellucida (ZP) domain; Region: ZP; smart00241"
                     /db_xref="CDD:214579"
ORIGIN      
        1 tgcccgtccc cgcccgcgtg tgtgaggggg agcgagtgcg ctgggtcggc ccgatggggg
       61 taatcgaggg tttcggggac gccgagcggc gctttcctct tcccagagag tgagggaggg
      121 aagtcggcgg ctctcgtgcc cggccacttt ctctgcgcga ttccctgagc tccctgcagg
      181 aggagaaagt ccccggcggg tccggatggc gtagttgcgc cgcggcgcag cagctgccgg
      241 agctcgccgc cgccgggcgc ggggcgggga aacttcgttc tgctttgctc cagcttgtgg
      301 cgggtggatc tccgcttgac acaccgcatc caaggcaatt tgaaaattgg caagaaagat
      361 tttaaggcca cttccaattt gcaaagatta tttataatct gaagaactgc agactgaggt
      421 gactgaacgg gacacacttt tggaaaaata aaaatggctt ctcattgtgt gattgccatg
      481 tttgccctga tgagttcctg tttagcaact gcaggtccag agcccagcgc ccagtgtgaa
      541 ctgtcgcctg tcaatgcctc ccatccagtc caggccttga tggagagttt caccgtcttg
      601 tcgggatgtg ccagcagggg gacggtgggg ttgccccagg aggtgcacgt cctgaacctc
      661 cgcactgccg accagggtcc cggccagcca cagagagagg tcactctgca cctgaatccc
      721 atctcctcag tctacattca ccacaagcct gtcgtgttcc tgctcaactc cccacagccc
      781 ctggtttggc atctgaagac agagagactt gcaattggca tctccagact tttcttggtg
      841 tctgagggtt ctgtggtcca tttttcatca ggaaacttct ccttgtcagc agaaacagag
      901 gaaagaagct tcccgcatgg aaatgagcat ctgttaaatt gggcccgaaa ggaatatgga
      961 gcagttactt cattcactga actcaagata gcaagaaaca tttatattaa agtgggggaa
     1021 gatcaagtgt tccctcccac gtgcaacata gggaagaatt ttctctccct caattacctt
     1081 gccgggtacc ttcagcccaa agctgcagaa gggtgtgtga tatccagcca gcctcgagat
     1141 aaggaagtac acatcattga gttaatcacc cccaactcta acccctacag tgctttccag
     1201 gtggatatca taattgacat aagaccttct cgaaaggatc ctgaggtggt caaagatctc
     1261 atcctgatct tgaagtgcaa aaagtctgtc aactgggtga tcaaatcttt tgatattaag
     1321 ggaaacctga aagttatcgc tcctaacagt attggctttg ggaaagaaag tgaaagatcc
     1381 atgataatga ccaaatcaat aagagatgac attccttcaa cccaagagag tctggtcaag
     1441 tgggctttgg acaatggctg tagtccagta acatcataca cagtggctcc tgtggctaat
     1501 agatttcatc ttcggcttga aaacaatgag gagatgagag atgaggaagt ccataccatc
     1561 cctcctgagc tacggatcct gctggaccct ggccacctgc ctgccctgga caacccccgc
     1621 atccggggaa ggggaggcca aaatggaggt ttcccctttc ccttccccga tatctccagg
     1681 agaggctgga aggaaggggg agaagatggg atccctcggc caaaggaccc tgtcatcccc
     1741 agcatacaac tgtttcctgg tcccagagag gccgaggagg tgccggggag catggatgtt
     1801 gccctgtcag tcaaatgtga caatgaaaag atgactgtgg ctatagaaaa agattcgttt
     1861 caggccagag gctactctgg gatggagctc accctgttgg atcccacatg caaggccaag
     1921 atgaatggca cccacttcat tttggagtct cccctgaatg gctgtgggac tcggcaccgg
     1981 agatcagtcc cttatggtgt ggtttactac aactccattg taatacaggt tccaccccct
     2041 ggggatagta gtggctggcc agatggttat gaagatttgg agtcaggtga taatggattt
     2101 ccgggagata cggatgaagg agatacttcc ttcttcagcc gacctgaaac tgtggtgttt
     2161 aattgtagcc tgcggcaggt ggggaatccc agtagcttcc aggacccacc caacagaaat
     2221 gtcaccttca acatggagtt gtacaacact gacctctttc tggtgccctc ccaaggcgtc
     2281 ttctctgtgg cagagaacgg acatgttttt gttgaggtgt ccgtcaccaa ggctgaccaa
     2341 gaactgggat ttgccatcca gacttgcttt atctctccat attcgaaccc tgataggatg
     2401 tctgattata ctatcattga gaacatttgt cctaaagatg aatctgtgaa attctacaat
     2461 cccaagagag tgcactttcc tatcccgcaa gccgagatag ataagaaaca attcagcttt
     2521 gtctttaagc ccatcttcaa cacctccctg ctctttctac agtgtgagct cacattgtgt
     2581 accaaaaagg aaaaggaccc ccagaagtta cctaagtgtg tgcttcctga tgaagcctgc
     2641 acctcgctgg atgcctcgat gatctgggcc atgatgcaga ataagaagac gttcaccaag
     2701 cccctcgctg tgatccacca tgaagtacaa tttaaaggtc caagcattaa gaaaccgatt
     2761 ccagtttctc caccgatatt ccatggtctg gacaccctaa ccgtgatggg cattgccttc
     2821 gcagcatttg tgattggagc actgctgaca ggggccttat ggtacatcta ttctcacaca
     2881 ggagagactg caggaaggca gcaggtcccc acctccccac cagcctcgga aaacagcagc
     2941 gctgcgcaca gcatcggtag cacgcagagc acgccctgct ccagcagcag cacagcctag
     3001 cctgccccac ccaccgccaa gggcaggact gggagcccac ccctgggccc agattccaga
     3061 ctcgggaggc tagattgtgg gtccctggta aagagagtga atttcaatat agcgatcacc
     3121 tgttgtgttc accccccacc cagggctaat ataaatgtga cccctgggct tctgtaacac
     3181 actagattca tgtgagaaag ctaaggtggt ggccctctcc accagcccct cacaggcttg
     3241 ggggttttca atgtgaaaca catgccagtt tttaaaatgc tgctttgtcc aggtaagaac
     3301 atccgtaatt tggagccctg cgttttaccc agtcgcaaag ggttggtaaa aggataatag
     3361 ccagatagta gaaccagcga gcagatgtgg ccaaagattc ttttataact gaactaagat
     3421 gtaaaacagc agaaatgctt cgagactttc tcagtgtgtt cctccatttc tagtttgcac
     3481 cttctggatg cacacttctc accttgctgc cacacttgtg gggactgctg tgtcggcttg
     3541 atgggtgctg ccctcacgga ctgcatcctg acacacctca aggcaacatt cctttcttgt
     3601 gccctgggcc aaaaccagtg ctgatttcct tatcagcttc ctccttctcc ccacattcac
     3661 acaccaactg caaaaacgtc ttattgtaaa ttttgcattt ctttataggc atatagaaat
     3721 tgaaaatggc caaaatctga gactgaagat ttgtgcccat ttatgacaat gtgttctatt
     3781 acattaatgt gtaaatgggg gcaaaattcg gttgtaaagt tgaggaggaa tttgcacagt
     3841 gatatatgta ccagtacaag tatataatac gtcatttggc acattcgttt ttttcagttt
     3901 aagaagagaa aattcattcc catttaaaaa atgtcctaca ccttcagagt tggaacttat
     3961 tcttaaatat atttgagaga attagtgttt ccatgcaaaa catgtcaacc ttttcactag
     4021 acccttttgt aaacgccaag ctcttgtaag atgcaagtgt atggcagact gttggttatc
     4081 tgaacagtgt caccagttct gccaagaaac tgatgagata cggaaaaaga cactcatttg
     4141 gattgcttta gttctcttgc cttcagtata cccccaaaac tcaaaaagaa tttgaggtga
     4201 attttattaa aatggaataa tatgatacca ctttgcagct aaaataagct caactgatac
     4261 ctctatgtta aaaaaaggtg ccggaggaaa atgtccatgc caaatcattt actcctgaag
     4321 gtaacttcat tgcaaataaa tattattctc tttccagaat tctcccaaac aactcagaag
     4381 tctacaaata gaacaggcta gattctaccc ccacactact cataagcaaa tctaactgct
     4441 cttaaaataa ggaagttgtg cctggttctc tgtgaatgga atcttaagta ggaaatgttg
     4501 atgtcaccgg agacctgagg gcagtgtcta caaggcaaat aggtagagat tgacaatggt
     4561 taacccatca tggagtcatg ctctgattga tttgatagtt atagacattc aatcaggatg
     4621 attttaatca aaacagattg tgggctaaga tttccaggct atctatattg ataattttgc
     4681 agattttcac agacaaatga agataggaga ttagaaaaac ttttgccttc agttaacttt
     4741 ttttaacata aaggtatgag tggaggacct agattatgct acctgtgttt gaaaataatg
     4801 cgctttgcct aaccttcagc agaatgtatt gttttagcat attctatgta taaaaaagtt
     4861 taaagatgtc ttcaaagaag actagagtct ttaagtcact tatagctata ttttactaca
     4921 aaaatctgtg tataaagata tatttaagtg ttttagataa atttaagtta ctccatatga
     4981 aatgtttaat ttcagttact gtgaattctt ttgatcagtt ctttgctttt taaaaatccc
     5041 tatccatcct gttaaaaaga tgattaacta ttaagaggta ttaaaaggtc caattcttag
     5101 atggacaggg ttaaaacctt ttgtaatata tttaaatgta tatttttgag agagatgcta
     5161 cattgccgat gattttataa ataatttaaa attaatttac aaatttatgg gtgcaaacca
     5221 aaagatttta aaagaaagag gagaaatcaa cttttatttg tttgggtctt actatccaga
     5281 agtattattc agatcaagaa attcatgtgg atgaaaccca atcctgtgtt aattgccgag
     5341 tgaacatcat taagtatttc tgaaatgttt ctaaaaagtg aacatttttt taaaattgtg
     5401 ttttctccct agcttcctgt tacagcattt ccagttgctt catatttcac agttttaata
     5461 caaagtataa gctctacttt ataatacatc ctacaagttt ctttaaaact gtttttatat
     5521 tccagttaaa ttcctctatc tgcaaagtct tctgttactt ctgcaggtta cacccttcct
     5581 ttgcagaggc cattttgttt tatttatttg atgctaaagc tattgttgaa atgccctaaa
     5641 ctcgaaggca gagtgtgtaa taccctatag cttttcaccg tgtggtgtgt accagcccgt
     5701 tgctctgtat ttggaaagtc agattccttc tgagtaagct gtttctatag cattttctaa
     5761 acaaaacaaa aggtcttttc cttgtctgta atgagattgt aaacccgttt cctgtgtgtg
     5821 tgctctgttg tgggcgtgct tgtgagtgtg tgagggggtg tgcacctgcg tgccggtttt
     5881 tttgtactgt aactacctca tgatttgagt gatggttgta ctgctgattg tgttaacaga
     5941 gcacattttg ttgggtgact cttgcgtgtg attttttttt cctgtttgtt ttccctgggg
     6001 gttgttcatg aaactgacag atgtttttct gaaaaggact attatcagtt tccaaataca
     6061 atacttctct cttctggttt ttcctgaatg agcctgattt tgttgctgtt tttcatcatc
     6121 tatgagggta aaaagagtac cctgaaaatc cctgtggcca gtttgagcac ccctgttgta
     6181 ctcttttctc tgttcagtat gtcgtcaatc ttatgaccat gcttagatgt atagttttga
     6241 taaccacagt tttaagtcct ttatctgtgc ataataaaaa gatatatatc aattattaa
//
LOCUS       XR_004352223             811 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ferritin heavy chain-like (LOC116762186),
            misc_RNA.
ACCESSION   XR_004352223
VERSION     XR_004352223.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..811
                     /gene="LOC116762186"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /pseudo
                     /db_xref="GeneID:116762186"
     misc_RNA        1..811
                     /gene="LOC116762186"
                     /product="ferritin heavy chain-like"
                     /pseudo
                     /db_xref="GeneID:116762186"
ORIGIN      
        1 agccctcgcc accgcctcac ggcgccctcc gaccgcccca aggtccccgc cgccgttaca
       61 gcgccgagca gccaccgcca ccgtttcccc tcagccgccc gccatgacga ccgcgtcccc
      121 ctcgcgggtg cgccagaact accaccagga ctcggaggcc gccatcaacc gccagatcaa
      181 cctggagctc tacggctcct acgtctacct gtccatggcg tactatttcg accgcgatga
      241 tgtggctttg aagaactttg ccaaatactt tcttcaccaa tcttgtgagg agagggaaca
      301 tgctgagaaa ctgatgaagc tgcagaacca acggcgtggc cgaatcttcc ttcaggatat
      361 caggaaacca gaccgtgatg actgggagaa tgggctgaat gcaacggaat gtgcgctaca
      421 cttggaaaaa agtgtgaatc agtcactcct ggaactgcac aaactggcca ctgagaaaaa
      481 tgacccccat ttgtgtgact tcattgagac tcgttatctg aatgagcagg tgaaatccat
      541 taaagaattg ggtgaccatg taaccaactt gcgcacgatg gggcccccga atctggcatg
      601 gcacagtatc tttttgacaa gcacaccctg ggaaatagtg ataatgagag ctaagcctta
      661 ggctggtttc ccgtagccac aggggtgact tccctggtca ccaaggcagt gcatgcatgt
      721 ttgggttacc ttaccttttc tgtaagttgt accaaaatat ctacaagtcc tttccttagt
      781 accattcctt caaataaagt aatttggtac c
//
LOCUS       XR_004352224            2259 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116762197
            (LOC116762197), ncRNA.
ACCESSION   XR_004352224
VERSION     XR_004352224.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2259
                     /gene="LOC116762197"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116762197"
     ncRNA           1..2259
                     /ncRNA_class="lncRNA"
                     /gene="LOC116762197"
                     /product="uncharacterized LOC116762197"
                     /db_xref="GeneID:116762197"
ORIGIN      
        1 cccatatatc aggaagatga agcgaccctg taaaagaaaa tggagggaaa aagctgttaa
       61 cactaatcat ttcagcagta ggaatacctg aagtcgactt tcctgggaac agacgaaaga
      121 agacacactt catcaagaag cactgaagag catgattgag caaaccccca gatgatgact
      181 tcccaagacc ccgaaagagt ctgaaactcc aagtcactcc aaggaacatc tgtctgcctt
      241 tctttctccg gggctatcca cctgatacca ccacaaccag ttgaaagaga atacctttaa
      301 gaacagctgg aaggaaccaa ccgccaaact tcaactggca ctgaggtttc tggaactcct
      361 tataccaaca ttctgtccta ccgaagagtg aatatcgaag tatgccacac ctctgaaatg
      421 aatgaccccc acgtctgtta ggaagtttct gcgattccat ccatagacat tcccgtccat
      481 catatatttg gagtatttat ctatagaggt accaatttct caatatttta gtcccggtaa
      541 aaataacact tattgggcag gaatctccca agggtggctg tttcatgggc atgtgtgtgt
      601 ttcacgggca agagccagga ctagggaaag aacaccaggg tgttgcattt aacactgtac
      661 aggagttaaa aatagaaact taagggaagg gggcgggaat cttcctctat ttctttattc
      721 tcatttatct atgaaacgtt caaaactgag gcagctctgt aaatactttc attgttacag
      781 aagtccatgg aacagtatct gccgaaggat tcaagggcca gcatctagtc tgttatttta
      841 atattgattg gccttgagtt ttcatagggc acttcatgac tgcaacaaaa tcatcttctt
      901 ttaagtgcta atatgttctt tcctggcgat acaaagaaca ggaaagatgc caccatacac
      961 agtacattac ctactcagga atctgaatga gattaacaat gctaatatat gtagagcccc
     1021 ctcaaagcac tttcatttac ataattccgt ctgttcctca ctacaatact gccaagcagg
     1081 cgacgggcgt attattagct ttattttaga tatgggcatt tggaggcttg ctccaagtgc
     1141 cacgatgctg acaggttggc gaagccaagg acatatgttc tcactcctca cacgatgcct
     1201 tttcacacac acgctgcctt caatagaccc tttcataact taagtcacca gcatcaagat
     1261 aatgcaattg gtaagatctt tgaaagctga ggtttgtcga aagcattttg cagtttgatt
     1321 agctcaaggt cggggactcg gtatccggta ataaccctgc tcctctgcca gtctaagagg
     1381 gcctggcgag tgcggcagga aattggcttc acaacagaga ttctcagttg ctatgtgcca
     1441 ggctctgtct tttgtacttt cctaccaaat tctcattcaa tgatgtatac ttgctagttg
     1501 ccgggaaaca tatcttttcc catcaaaagg ctgctaggta accgcatagt caaacatcct
     1561 tatcattatc agcatctacg gaacttcttt gaatgtatgg ccctaagctg tgtgctttta
     1621 tttatttata aatcacgctc caacctacct gctataaaca attcccgttt ggggggcaaa
     1681 atcccataga aacaaagcat cagtggacat tggcatgtat gctccgggtt gctcctggca
     1741 gcactgggta aggtggcaaa gacctggaaa caactgcagg cccttcaagc taggaatagc
     1801 tgaataaatt gtggtatctt tagcccctag gatattaggc agccgaagga gtgagttaga
     1861 gctatgttta ttagcctgga gagagtccca tgcattgtta aatgagaaaa ggaagaggaa
     1921 cagacctgtg cattatatat tctcattttt gccaaaagga cgacaaaacc ttcctttcct
     1981 cctccccaaa tataactgat taaacaggag aaaagggtgg aaagattcac accaaacctt
     2041 tgtcactggt ttcctaaggg gaaggatggg acggagaaga cgtaagtcag aaacaggggg
     2101 gacagaaact aactagaaaa acaggcatga cttggtcaac agaagaggtg aaatgtaaaa
     2161 ttctacagag catattgcca taaacatagc aaacagaatc tgcacctgga taaggatcta
     2221 aatataagat gaacaaataa aatattgatt tgaggttaa
//
LOCUS       XM_032648942            2980 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coenzyme Q8A (COQ8A), transcript variant
            X1, mRNA.
ACCESSION   XM_032648942
VERSION     XM_032648942.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2980
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2980
                     /gene="COQ8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 7 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762204"
     CDS             158..2101
                     /gene="COQ8A"
                     /codon_start=1
                     /product="atypical kinase COQ8A, mitochondrial isoform X1"
                     /protein_id="XP_032504833.1"
                     /db_xref="GeneID:116762204"
                     /translation="MASMLGDTIMVVKGLAKLTQAAVETHLQHLGLSRELIMAARALQ
                     STAAEQIRMVLGQVQGQEKHEESYTKSSDNPQAEFHSSGLRAEGASEELSAASSPDQS
                     PPPWDHARSQGPAPAYVASGPFREGGLRVQAASPMGRVNGPLFVDPRDPFSATGLQRR
                     FYHQDQSPVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGRLANFGG
                     LAVGLGFGALAEVAKKSLRPEDPSGKKAVLDSSPFLSEANAERIVRTLCKVRGAALKL
                     GQMLSIQDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNNDLGPSWRDKLEYFEERP
                     FAAASIGQVHLARMKGGREVAMKIQYPGVAQSISSDVHNLMAVLNMSNMLPEGLFPEH
                     LIDVLRRELTLECDYQREAACARRFRELLKDHPFFYVPEIVDELCSPHVLTTELVSGF
                     PLDQAEGLSQEIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFG
                     ATREYDRSFTDLYIQIIRAAANQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILG
                     EAFASEEPFDFGTQSTTEKIHNLIPVMLKHRLVPPPEETYSLHRKMGGSFLICSKLKA
                     RFPCRAMFEEAYSNYRRRQAEQQ"
     misc_feature    1037..1789
                     /gene="COQ8A"
                     /note="Activator of bc1 complex (ABC1) kinases, also
                     called aarF domain containing kinase 3; Region:
                     ABC1_ADCK3; cd13970"
                     /db_xref="CDD:270872"
     misc_feature    order(1199..1213,1217..1219,1247..1249,1253..1255,
                     1430..1432,1487..1498,1616..1618,1628..1633,1637..1639,
                     1670..1675)
                     /gene="COQ8A"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270872"
ORIGIN      
        1 cggcctgcgg ggcggggctc ccggcgctgg gtctctgggc tagggcgagc tggtaaacag
       61 atacggagtg catgccgggt gtctacgcta cggcgagcgc gcggaggctg cgcgaaggtg
      121 accgcggatc ccagcttcct gcagccggcc ctgaaggatg gcttccatgt tgggggacac
      181 catcatggtg gtcaaaggcc ttgccaagct gacccaggcg gccgtggaga cccacctgca
      241 gcacctgggc ctcagcaggg agctcattat ggcggccagg gccctgcagt ccacggccgc
      301 agagcagatc cgcatggtct tggggcaggt gcagggtcag gagaagcatg aagagtctta
      361 taccaagagc tctgacaacc cgcaagcaga attccactcc tcagggctga gggctgaggg
      421 cgcctccgag gagctgtctg cggcctcctc ccccgatcag tcccctccgc cctgggatca
      481 cgcccgcagc cagggcccag ctcctgccta tgttgccagc ggacccttta gggaaggcgg
      541 gctccgggtc caggccgcct cccctatggg cagggtgaac gggccgctct ttgtggaccc
      601 cagagaccca ttctctgcca cgggcctgca gcgaaggttc taccaccagg accagtcccc
      661 tgtggggggc ctgacggctg aggacattga gaaggcccgg caggccaagg ctcgcccgga
      721 gagcaagccc cacaagcaga tgctcagtga gcgggctcgc gagcggaagg tgccagttac
      781 gcggattggg cggttggcca actttggagg tctggccgtg ggtctgggct tcggggccct
      841 ggccgaggtc gccaagaaga gcctccgccc tgaggacccc tcagggaaga aggccgtgct
      901 ggattccagc cccttcctgt cagaggccaa cgcggagcgc atcgtgcgga cgctgtgcaa
      961 ggtgcgcggg gcggcgctca agctgggcca gatgctgagc atccaggacg acgccttcat
     1021 caacccccat ctggccaaga tcttcgagcg ggtcaggcag agcgcagact tcatgccgct
     1081 gaagcagatg acgaaaactc tcaacaacga cctgggcccc agctggcggg acaagctgga
     1141 gtactttgag gagcggccct ttgcagccgc ctctatcggg caggtgcacc tggcccgcat
     1201 gaagggcggc cgcgaggtgg ccatgaagat ccagtacccc ggcgtggccc agagcatcag
     1261 cagtgacgtc cacaacctca tggccgtgct gaacatgagc aacatgcttc cagaaggcct
     1321 gttccctgag cacctgatcg acgtgctgag gcgggagctg accctcgagt gtgactacca
     1381 gcgagaggcc gcctgtgccc gcaggttcag ggagctgctg aaggaccacc ccttcttcta
     1441 cgtgcccgag attgtggacg agctctgcag cccccatgtg ctgaccacgg agctggtgtc
     1501 cggcttcccc ctggaccagg ccgaggggct gagccaggag atccggaatg agatctgcta
     1561 caacatcctg gtcctgtgcc tgagggagct gttcgagttc cacttcatgc agacagaccc
     1621 caactggtcc aacttctttt atgaccctca gcagcacaag gtggctcttc tggacttcgg
     1681 ggcgactcgg gaatatgaca gatccttcac ggacctctac atccagatca tcagggctgc
     1741 tgctaaccag gacagggagg ccgtgctgaa gaagtccatc gagatgaagt tcctcaccgg
     1801 ctacgaggtc aaggccatgg aagacgccca cttggatgcc atccttatcc tgggggaggc
     1861 ctttgcctcg gaggagccct ttgactttgg cacccagagc accaccgaga agatccacaa
     1921 cctgatcccc gtcatgctga agcaccggct tgtcccgccg cccgaggaga cctactcgtt
     1981 gcacaggaag atggggggct ccttcctcat ctgctccaag ctgaaggccc ggttcccctg
     2041 cagggccatg ttcgaggagg cctacagcaa ctaccgcagg aggcaggccg agcagcagta
     2101 gccgcgggcc cggccgctag gcgggaccct ccgtcctcct gccgctaaaa ctcgtaggaa
     2161 gccagtggta gccacgctcc gtttaagctt cacccagtga gagggggccg cgctgatggg
     2221 ggggccgctg ctcagagccc gtggccagca cttatacacg gttctcatcg ctgagtgggt
     2281 gtggggtgag aggcgccagc acggaaatgc agccccgctg ctgtctggca gaatctgctt
     2341 attgtttact catcctctga aatgactctc gataaaaaga cgattttatt tccttttcct
     2401 ttttgtaaca gggctttttg ctaatgtgaa tggtaaccag gagaagatga ggagaagatg
     2461 agagttctcc ctttgaatcc ctgccaccaa aaaaaaaaaa accaaaacca aaaaacagaa
     2521 aagccttttt ggattttatg gagtgtgtaa tacaaggttt gtgtgtgtgt gtgtttctag
     2581 aatgagatgt gtgttttctg ccttttcctc tccagcttgg atctgcacct gggagaagtg
     2641 ctgatctgag cagtgccgac aagcacgact tctccgagca aggcccaccc acacctgctc
     2701 tctggctggt tcctagaggc tttttttgac aagcagaggt ttccagagaa ctgctgcccc
     2761 ctgcggggag gggcgggagc cccagaaggg gagagaaggc cgcgtgctct ctgtgtgtgt
     2821 gtgggccctt cttcccgctc cggcgcctgg gccgtttgtg gaaggtgatg tgcacgtgtc
     2881 atctgcttgg acccgagggg tcgtttcagg ccgttaacct ctgtacaatt cttgtaattg
     2941 tctgatttac ttgtttcaat taaagaaaaa aatgctagca
//
LOCUS       XM_032648946            2932 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coenzyme Q8A (COQ8A), transcript variant
            X2, mRNA.
ACCESSION   XM_032648946
VERSION     XM_032648946.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2932
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2932
                     /gene="COQ8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762204"
     CDS             110..2053
                     /gene="COQ8A"
                     /codon_start=1
                     /product="atypical kinase COQ8A, mitochondrial isoform X1"
                     /protein_id="XP_032504837.1"
                     /db_xref="GeneID:116762204"
                     /translation="MASMLGDTIMVVKGLAKLTQAAVETHLQHLGLSRELIMAARALQ
                     STAAEQIRMVLGQVQGQEKHEESYTKSSDNPQAEFHSSGLRAEGASEELSAASSPDQS
                     PPPWDHARSQGPAPAYVASGPFREGGLRVQAASPMGRVNGPLFVDPRDPFSATGLQRR
                     FYHQDQSPVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGRLANFGG
                     LAVGLGFGALAEVAKKSLRPEDPSGKKAVLDSSPFLSEANAERIVRTLCKVRGAALKL
                     GQMLSIQDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNNDLGPSWRDKLEYFEERP
                     FAAASIGQVHLARMKGGREVAMKIQYPGVAQSISSDVHNLMAVLNMSNMLPEGLFPEH
                     LIDVLRRELTLECDYQREAACARRFRELLKDHPFFYVPEIVDELCSPHVLTTELVSGF
                     PLDQAEGLSQEIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFG
                     ATREYDRSFTDLYIQIIRAAANQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILG
                     EAFASEEPFDFGTQSTTEKIHNLIPVMLKHRLVPPPEETYSLHRKMGGSFLICSKLKA
                     RFPCRAMFEEAYSNYRRRQAEQQ"
     misc_feature    989..1741
                     /gene="COQ8A"
                     /note="Activator of bc1 complex (ABC1) kinases, also
                     called aarF domain containing kinase 3; Region:
                     ABC1_ADCK3; cd13970"
                     /db_xref="CDD:270872"
     misc_feature    order(1151..1165,1169..1171,1199..1201,1205..1207,
                     1382..1384,1439..1450,1568..1570,1580..1585,1589..1591,
                     1622..1627)
                     /gene="COQ8A"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270872"
ORIGIN      
        1 cggggtcggg gcagcctgtg ctgagggaga agggaaggca ggtttggccg ggatgaggct
       61 gaaggagaag cagagtcaac gggaggtttt tcagtatttg ccctgaagga tggcttccat
      121 gttgggggac accatcatgg tggtcaaagg ccttgccaag ctgacccagg cggccgtgga
      181 gacccacctg cagcacctgg gcctcagcag ggagctcatt atggcggcca gggccctgca
      241 gtccacggcc gcagagcaga tccgcatggt cttggggcag gtgcagggtc aggagaagca
      301 tgaagagtct tataccaaga gctctgacaa cccgcaagca gaattccact cctcagggct
      361 gagggctgag ggcgcctccg aggagctgtc tgcggcctcc tcccccgatc agtcccctcc
      421 gccctgggat cacgcccgca gccagggccc agctcctgcc tatgttgcca gcggaccctt
      481 tagggaaggc gggctccggg tccaggccgc ctcccctatg ggcagggtga acgggccgct
      541 ctttgtggac cccagagacc cattctctgc cacgggcctg cagcgaaggt tctaccacca
      601 ggaccagtcc cctgtggggg gcctgacggc tgaggacatt gagaaggccc ggcaggccaa
      661 ggctcgcccg gagagcaagc cccacaagca gatgctcagt gagcgggctc gcgagcggaa
      721 ggtgccagtt acgcggattg ggcggttggc caactttgga ggtctggccg tgggtctggg
      781 cttcggggcc ctggccgagg tcgccaagaa gagcctccgc cctgaggacc cctcagggaa
      841 gaaggccgtg ctggattcca gccccttcct gtcagaggcc aacgcggagc gcatcgtgcg
      901 gacgctgtgc aaggtgcgcg gggcggcgct caagctgggc cagatgctga gcatccagga
      961 cgacgccttc atcaaccccc atctggccaa gatcttcgag cgggtcaggc agagcgcaga
     1021 cttcatgccg ctgaagcaga tgacgaaaac tctcaacaac gacctgggcc ccagctggcg
     1081 ggacaagctg gagtactttg aggagcggcc ctttgcagcc gcctctatcg ggcaggtgca
     1141 cctggcccgc atgaagggcg gccgcgaggt ggccatgaag atccagtacc ccggcgtggc
     1201 ccagagcatc agcagtgacg tccacaacct catggccgtg ctgaacatga gcaacatgct
     1261 tccagaaggc ctgttccctg agcacctgat cgacgtgctg aggcgggagc tgaccctcga
     1321 gtgtgactac cagcgagagg ccgcctgtgc ccgcaggttc agggagctgc tgaaggacca
     1381 ccccttcttc tacgtgcccg agattgtgga cgagctctgc agcccccatg tgctgaccac
     1441 ggagctggtg tccggcttcc ccctggacca ggccgagggg ctgagccagg agatccggaa
     1501 tgagatctgc tacaacatcc tggtcctgtg cctgagggag ctgttcgagt tccacttcat
     1561 gcagacagac cccaactggt ccaacttctt ttatgaccct cagcagcaca aggtggctct
     1621 tctggacttc ggggcgactc gggaatatga cagatccttc acggacctct acatccagat
     1681 catcagggct gctgctaacc aggacaggga ggccgtgctg aagaagtcca tcgagatgaa
     1741 gttcctcacc ggctacgagg tcaaggccat ggaagacgcc cacttggatg ccatccttat
     1801 cctgggggag gcctttgcct cggaggagcc ctttgacttt ggcacccaga gcaccaccga
     1861 gaagatccac aacctgatcc ccgtcatgct gaagcaccgg cttgtcccgc cgcccgagga
     1921 gacctactcg ttgcacagga agatgggggg ctccttcctc atctgctcca agctgaaggc
     1981 ccggttcccc tgcagggcca tgttcgagga ggcctacagc aactaccgca ggaggcaggc
     2041 cgagcagcag tagccgcggg cccggccgct aggcgggacc ctccgtcctc ctgccgctaa
     2101 aactcgtagg aagccagtgg tagccacgct ccgtttaagc ttcacccagt gagagggggc
     2161 cgcgctgatg ggggggccgc tgctcagagc ccgtggccag cacttataca cggttctcat
     2221 cgctgagtgg gtgtggggtg agaggcgcca gcacggaaat gcagccccgc tgctgtctgg
     2281 cagaatctgc ttattgttta ctcatcctct gaaatgactc tcgataaaaa gacgatttta
     2341 tttccttttc ctttttgtaa cagggctttt tgctaatgtg aatggtaacc aggagaagat
     2401 gaggagaaga tgagagttct ccctttgaat ccctgccacc aaaaaaaaaa aaaccaaaac
     2461 caaaaaacag aaaagccttt ttggatttta tggagtgtgt aatacaaggt ttgtgtgtgt
     2521 gtgtgtttct agaatgagat gtgtgttttc tgccttttcc tctccagctt ggatctgcac
     2581 ctgggagaag tgctgatctg agcagtgccg acaagcacga cttctccgag caaggcccac
     2641 ccacacctgc tctctggctg gttcctagag gctttttttg acaagcagag gtttccagag
     2701 aactgctgcc ccctgcgggg aggggcggga gccccagaag gggagagaag gccgcgtgct
     2761 ctctgtgtgt gtgtgggccc ttcttcccgc tccggcgcct gggccgtttg tggaaggtga
     2821 tgtgcacgtg tcatctgctt ggacccgagg ggtcgtttca ggccgttaac ctctgtacaa
     2881 ttcttgtaat tgtctgattt acttgtttca attaaagaaa aaaatgctag ca
//
LOCUS       XM_032648951            3067 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coenzyme Q8A (COQ8A), transcript variant
            X3, mRNA.
ACCESSION   XM_032648951
VERSION     XM_032648951.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3067
                     /gene="COQ8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 long SRA reads, 13
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116762204"
     CDS             245..2188
                     /gene="COQ8A"
                     /codon_start=1
                     /product="atypical kinase COQ8A, mitochondrial isoform X1"
                     /protein_id="XP_032504842.1"
                     /db_xref="GeneID:116762204"
                     /translation="MASMLGDTIMVVKGLAKLTQAAVETHLQHLGLSRELIMAARALQ
                     STAAEQIRMVLGQVQGQEKHEESYTKSSDNPQAEFHSSGLRAEGASEELSAASSPDQS
                     PPPWDHARSQGPAPAYVASGPFREGGLRVQAASPMGRVNGPLFVDPRDPFSATGLQRR
                     FYHQDQSPVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGRLANFGG
                     LAVGLGFGALAEVAKKSLRPEDPSGKKAVLDSSPFLSEANAERIVRTLCKVRGAALKL
                     GQMLSIQDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNNDLGPSWRDKLEYFEERP
                     FAAASIGQVHLARMKGGREVAMKIQYPGVAQSISSDVHNLMAVLNMSNMLPEGLFPEH
                     LIDVLRRELTLECDYQREAACARRFRELLKDHPFFYVPEIVDELCSPHVLTTELVSGF
                     PLDQAEGLSQEIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFG
                     ATREYDRSFTDLYIQIIRAAANQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILG
                     EAFASEEPFDFGTQSTTEKIHNLIPVMLKHRLVPPPEETYSLHRKMGGSFLICSKLKA
                     RFPCRAMFEEAYSNYRRRQAEQQ"
     misc_feature    1124..1876
                     /gene="COQ8A"
                     /note="Activator of bc1 complex (ABC1) kinases, also
                     called aarF domain containing kinase 3; Region:
                     ABC1_ADCK3; cd13970"
                     /db_xref="CDD:270872"
     misc_feature    order(1286..1300,1304..1306,1334..1336,1340..1342,
                     1517..1519,1574..1585,1703..1705,1715..1720,1724..1726,
                     1757..1762)
                     /gene="COQ8A"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270872"
ORIGIN      
        1 agagcacggg ccagcccgct gcagtcacgt cagttccttc cactgcctcc cctccagtcc
       61 cgctcggagg cccggcgagc accggccggg acgtgacatc caaccgctgg ccaccgcggc
      121 tgcgcccgcc gcctcatcta ccgaagggct agttctcggg gtgcagccgc aacgaccacc
      181 cacccctgca gcccagcctt tacccagcct tcccaactag aggaaagggc tgccgccctg
      241 aaggatggct tccatgttgg gggacaccat catggtggtc aaaggccttg ccaagctgac
      301 ccaggcggcc gtggagaccc acctgcagca cctgggcctc agcagggagc tcattatggc
      361 ggccagggcc ctgcagtcca cggccgcaga gcagatccgc atggtcttgg ggcaggtgca
      421 gggtcaggag aagcatgaag agtcttatac caagagctct gacaacccgc aagcagaatt
      481 ccactcctca gggctgaggg ctgagggcgc ctccgaggag ctgtctgcgg cctcctcccc
      541 cgatcagtcc cctccgccct gggatcacgc ccgcagccag ggcccagctc ctgcctatgt
      601 tgccagcgga ccctttaggg aaggcgggct ccgggtccag gccgcctccc ctatgggcag
      661 ggtgaacggg ccgctctttg tggaccccag agacccattc tctgccacgg gcctgcagcg
      721 aaggttctac caccaggacc agtcccctgt ggggggcctg acggctgagg acattgagaa
      781 ggcccggcag gccaaggctc gcccggagag caagccccac aagcagatgc tcagtgagcg
      841 ggctcgcgag cggaaggtgc cagttacgcg gattgggcgg ttggccaact ttggaggtct
      901 ggccgtgggt ctgggcttcg gggccctggc cgaggtcgcc aagaagagcc tccgccctga
      961 ggacccctca gggaagaagg ccgtgctgga ttccagcccc ttcctgtcag aggccaacgc
     1021 ggagcgcatc gtgcggacgc tgtgcaaggt gcgcggggcg gcgctcaagc tgggccagat
     1081 gctgagcatc caggacgacg ccttcatcaa cccccatctg gccaagatct tcgagcgggt
     1141 caggcagagc gcagacttca tgccgctgaa gcagatgacg aaaactctca acaacgacct
     1201 gggccccagc tggcgggaca agctggagta ctttgaggag cggccctttg cagccgcctc
     1261 tatcgggcag gtgcacctgg cccgcatgaa gggcggccgc gaggtggcca tgaagatcca
     1321 gtaccccggc gtggcccaga gcatcagcag tgacgtccac aacctcatgg ccgtgctgaa
     1381 catgagcaac atgcttccag aaggcctgtt ccctgagcac ctgatcgacg tgctgaggcg
     1441 ggagctgacc ctcgagtgtg actaccagcg agaggccgcc tgtgcccgca ggttcaggga
     1501 gctgctgaag gaccacccct tcttctacgt gcccgagatt gtggacgagc tctgcagccc
     1561 ccatgtgctg accacggagc tggtgtccgg cttccccctg gaccaggccg aggggctgag
     1621 ccaggagatc cggaatgaga tctgctacaa catcctggtc ctgtgcctga gggagctgtt
     1681 cgagttccac ttcatgcaga cagaccccaa ctggtccaac ttcttttatg accctcagca
     1741 gcacaaggtg gctcttctgg acttcggggc gactcgggaa tatgacagat ccttcacgga
     1801 cctctacatc cagatcatca gggctgctgc taaccaggac agggaggccg tgctgaagaa
     1861 gtccatcgag atgaagttcc tcaccggcta cgaggtcaag gccatggaag acgcccactt
     1921 ggatgccatc cttatcctgg gggaggcctt tgcctcggag gagccctttg actttggcac
     1981 ccagagcacc accgagaaga tccacaacct gatccccgtc atgctgaagc accggcttgt
     2041 cccgccgccc gaggagacct actcgttgca caggaagatg gggggctcct tcctcatctg
     2101 ctccaagctg aaggcccggt tcccctgcag ggccatgttc gaggaggcct acagcaacta
     2161 ccgcaggagg caggccgagc agcagtagcc gcgggcccgg ccgctaggcg ggaccctccg
     2221 tcctcctgcc gctaaaactc gtaggaagcc agtggtagcc acgctccgtt taagcttcac
     2281 ccagtgagag ggggccgcgc tgatgggggg gccgctgctc agagcccgtg gccagcactt
     2341 atacacggtt ctcatcgctg agtgggtgtg gggtgagagg cgccagcacg gaaatgcagc
     2401 cccgctgctg tctggcagaa tctgcttatt gtttactcat cctctgaaat gactctcgat
     2461 aaaaagacga ttttatttcc ttttcctttt tgtaacaggg ctttttgcta atgtgaatgg
     2521 taaccaggag aagatgagga gaagatgaga gttctccctt tgaatccctg ccaccaaaaa
     2581 aaaaaaaacc aaaaccaaaa aacagaaaag cctttttgga ttttatggag tgtgtaatac
     2641 aaggtttgtg tgtgtgtgtg tttctagaat gagatgtgtg ttttctgcct tttcctctcc
     2701 agcttggatc tgcacctggg agaagtgctg atctgagcag tgccgacaag cacgacttct
     2761 ccgagcaagg cccacccaca cctgctctct ggctggttcc tagaggcttt ttttgacaag
     2821 cagaggtttc cagagaactg ctgccccctg cggggagggg cgggagcccc agaaggggag
     2881 agaaggccgc gtgctctctg tgtgtgtgtg ggcccttctt cccgctccgg cgcctgggcc
     2941 gtttgtggaa ggtgatgtgc acgtgtcatc tgcttggacc cgaggggtcg tttcaggccg
     3001 ttaacctctg tacaattctt gtaattgtct gatttacttg tttcaattaa agaaaaaaat
     3061 gctagca
//
LOCUS       XM_032648961            2854 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coenzyme Q8A (COQ8A), transcript variant
            X4, mRNA.
ACCESSION   XM_032648961
VERSION     XM_032648961.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2854
                     /gene="COQ8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762204"
     CDS             32..1975
                     /gene="COQ8A"
                     /codon_start=1
                     /product="atypical kinase COQ8A, mitochondrial isoform X1"
                     /protein_id="XP_032504852.1"
                     /db_xref="GeneID:116762204"
                     /translation="MASMLGDTIMVVKGLAKLTQAAVETHLQHLGLSRELIMAARALQ
                     STAAEQIRMVLGQVQGQEKHEESYTKSSDNPQAEFHSSGLRAEGASEELSAASSPDQS
                     PPPWDHARSQGPAPAYVASGPFREGGLRVQAASPMGRVNGPLFVDPRDPFSATGLQRR
                     FYHQDQSPVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGRLANFGG
                     LAVGLGFGALAEVAKKSLRPEDPSGKKAVLDSSPFLSEANAERIVRTLCKVRGAALKL
                     GQMLSIQDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNNDLGPSWRDKLEYFEERP
                     FAAASIGQVHLARMKGGREVAMKIQYPGVAQSISSDVHNLMAVLNMSNMLPEGLFPEH
                     LIDVLRRELTLECDYQREAACARRFRELLKDHPFFYVPEIVDELCSPHVLTTELVSGF
                     PLDQAEGLSQEIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFG
                     ATREYDRSFTDLYIQIIRAAANQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILG
                     EAFASEEPFDFGTQSTTEKIHNLIPVMLKHRLVPPPEETYSLHRKMGGSFLICSKLKA
                     RFPCRAMFEEAYSNYRRRQAEQQ"
     misc_feature    911..1663
                     /gene="COQ8A"
                     /note="Activator of bc1 complex (ABC1) kinases, also
                     called aarF domain containing kinase 3; Region:
                     ABC1_ADCK3; cd13970"
                     /db_xref="CDD:270872"
     misc_feature    order(1073..1087,1091..1093,1121..1123,1127..1129,
                     1304..1306,1361..1372,1490..1492,1502..1507,1511..1513,
                     1544..1549)
                     /gene="COQ8A"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270872"
ORIGIN      
        1 ctctgttttg aggaaacaag agccctgaag gatggcttcc atgttggggg acaccatcat
       61 ggtggtcaaa ggccttgcca agctgaccca ggcggccgtg gagacccacc tgcagcacct
      121 gggcctcagc agggagctca ttatggcggc cagggccctg cagtccacgg ccgcagagca
      181 gatccgcatg gtcttggggc aggtgcaggg tcaggagaag catgaagagt cttataccaa
      241 gagctctgac aacccgcaag cagaattcca ctcctcaggg ctgagggctg agggcgcctc
      301 cgaggagctg tctgcggcct cctcccccga tcagtcccct ccgccctggg atcacgcccg
      361 cagccagggc ccagctcctg cctatgttgc cagcggaccc tttagggaag gcgggctccg
      421 ggtccaggcc gcctccccta tgggcagggt gaacgggccg ctctttgtgg accccagaga
      481 cccattctct gccacgggcc tgcagcgaag gttctaccac caggaccagt cccctgtggg
      541 gggcctgacg gctgaggaca ttgagaaggc ccggcaggcc aaggctcgcc cggagagcaa
      601 gccccacaag cagatgctca gtgagcgggc tcgcgagcgg aaggtgccag ttacgcggat
      661 tgggcggttg gccaactttg gaggtctggc cgtgggtctg ggcttcgggg ccctggccga
      721 ggtcgccaag aagagcctcc gccctgagga cccctcaggg aagaaggccg tgctggattc
      781 cagccccttc ctgtcagagg ccaacgcgga gcgcatcgtg cggacgctgt gcaaggtgcg
      841 cggggcggcg ctcaagctgg gccagatgct gagcatccag gacgacgcct tcatcaaccc
      901 ccatctggcc aagatcttcg agcgggtcag gcagagcgca gacttcatgc cgctgaagca
      961 gatgacgaaa actctcaaca acgacctggg ccccagctgg cgggacaagc tggagtactt
     1021 tgaggagcgg ccctttgcag ccgcctctat cgggcaggtg cacctggccc gcatgaaggg
     1081 cggccgcgag gtggccatga agatccagta ccccggcgtg gcccagagca tcagcagtga
     1141 cgtccacaac ctcatggccg tgctgaacat gagcaacatg cttccagaag gcctgttccc
     1201 tgagcacctg atcgacgtgc tgaggcggga gctgaccctc gagtgtgact accagcgaga
     1261 ggccgcctgt gcccgcaggt tcagggagct gctgaaggac caccccttct tctacgtgcc
     1321 cgagattgtg gacgagctct gcagccccca tgtgctgacc acggagctgg tgtccggctt
     1381 ccccctggac caggccgagg ggctgagcca ggagatccgg aatgagatct gctacaacat
     1441 cctggtcctg tgcctgaggg agctgttcga gttccacttc atgcagacag accccaactg
     1501 gtccaacttc ttttatgacc ctcagcagca caaggtggct cttctggact tcggggcgac
     1561 tcgggaatat gacagatcct tcacggacct ctacatccag atcatcaggg ctgctgctaa
     1621 ccaggacagg gaggccgtgc tgaagaagtc catcgagatg aagttcctca ccggctacga
     1681 ggtcaaggcc atggaagacg cccacttgga tgccatcctt atcctggggg aggcctttgc
     1741 ctcggaggag ccctttgact ttggcaccca gagcaccacc gagaagatcc acaacctgat
     1801 ccccgtcatg ctgaagcacc ggcttgtccc gccgcccgag gagacctact cgttgcacag
     1861 gaagatgggg ggctccttcc tcatctgctc caagctgaag gcccggttcc cctgcagggc
     1921 catgttcgag gaggcctaca gcaactaccg caggaggcag gccgagcagc agtagccgcg
     1981 ggcccggccg ctaggcggga ccctccgtcc tcctgccgct aaaactcgta ggaagccagt
     2041 ggtagccacg ctccgtttaa gcttcaccca gtgagagggg gccgcgctga tgggggggcc
     2101 gctgctcaga gcccgtggcc agcacttata cacggttctc atcgctgagt gggtgtgggg
     2161 tgagaggcgc cagcacggaa atgcagcccc gctgctgtct ggcagaatct gcttattgtt
     2221 tactcatcct ctgaaatgac tctcgataaa aagacgattt tatttccttt tcctttttgt
     2281 aacagggctt tttgctaatg tgaatggtaa ccaggagaag atgaggagaa gatgagagtt
     2341 ctccctttga atccctgcca ccaaaaaaaa aaaaaccaaa accaaaaaac agaaaagcct
     2401 ttttggattt tatggagtgt gtaatacaag gtttgtgtgt gtgtgtgttt ctagaatgag
     2461 atgtgtgttt tctgcctttt cctctccagc ttggatctgc acctgggaga agtgctgatc
     2521 tgagcagtgc cgacaagcac gacttctccg agcaaggccc acccacacct gctctctggc
     2581 tggttcctag aggctttttt tgacaagcag aggtttccag agaactgctg ccccctgcgg
     2641 ggaggggcgg gagccccaga aggggagaga aggccgcgtg ctctctgtgt gtgtgtgggc
     2701 ccttcttccc gctccggcgc ctgggccgtt tgtggaaggt gatgtgcacg tgtcatctgc
     2761 ttggacccga ggggtcgttt caggccgtta acctctgtac aattcttgta attgtctgat
     2821 ttacttgttt caattaaaga aaaaaatgct agca
//
LOCUS       XM_032648972            2854 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coenzyme Q8A (COQ8A), transcript variant
            X5, mRNA.
ACCESSION   XM_032648972
VERSION     XM_032648972.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2854
                     /gene="COQ8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762204"
     CDS             32..1975
                     /gene="COQ8A"
                     /codon_start=1
                     /product="atypical kinase COQ8A, mitochondrial isoform X1"
                     /protein_id="XP_032504863.1"
                     /db_xref="GeneID:116762204"
                     /translation="MASMLGDTIMVVKGLAKLTQAAVETHLQHLGLSRELIMAARALQ
                     STAAEQIRMVLGQVQGQEKHEESYTKSSDNPQAEFHSSGLRAEGASEELSAASSPDQS
                     PPPWDHARSQGPAPAYVASGPFREGGLRVQAASPMGRVNGPLFVDPRDPFSATGLQRR
                     FYHQDQSPVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGRLANFGG
                     LAVGLGFGALAEVAKKSLRPEDPSGKKAVLDSSPFLSEANAERIVRTLCKVRGAALKL
                     GQMLSIQDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNNDLGPSWRDKLEYFEERP
                     FAAASIGQVHLARMKGGREVAMKIQYPGVAQSISSDVHNLMAVLNMSNMLPEGLFPEH
                     LIDVLRRELTLECDYQREAACARRFRELLKDHPFFYVPEIVDELCSPHVLTTELVSGF
                     PLDQAEGLSQEIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFG
                     ATREYDRSFTDLYIQIIRAAANQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILG
                     EAFASEEPFDFGTQSTTEKIHNLIPVMLKHRLVPPPEETYSLHRKMGGSFLICSKLKA
                     RFPCRAMFEEAYSNYRRRQAEQQ"
     misc_feature    911..1663
                     /gene="COQ8A"
                     /note="Activator of bc1 complex (ABC1) kinases, also
                     called aarF domain containing kinase 3; Region:
                     ABC1_ADCK3; cd13970"
                     /db_xref="CDD:270872"
     misc_feature    order(1073..1087,1091..1093,1121..1123,1127..1129,
                     1304..1306,1361..1372,1490..1492,1502..1507,1511..1513,
                     1544..1549)
                     /gene="COQ8A"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270872"
ORIGIN      
        1 acatcttact gcatctggcc agccctgaag gatggcttcc atgttggggg acaccatcat
       61 ggtggtcaaa ggccttgcca agctgaccca ggcggccgtg gagacccacc tgcagcacct
      121 gggcctcagc agggagctca ttatggcggc cagggccctg cagtccacgg ccgcagagca
      181 gatccgcatg gtcttggggc aggtgcaggg tcaggagaag catgaagagt cttataccaa
      241 gagctctgac aacccgcaag cagaattcca ctcctcaggg ctgagggctg agggcgcctc
      301 cgaggagctg tctgcggcct cctcccccga tcagtcccct ccgccctggg atcacgcccg
      361 cagccagggc ccagctcctg cctatgttgc cagcggaccc tttagggaag gcgggctccg
      421 ggtccaggcc gcctccccta tgggcagggt gaacgggccg ctctttgtgg accccagaga
      481 cccattctct gccacgggcc tgcagcgaag gttctaccac caggaccagt cccctgtggg
      541 gggcctgacg gctgaggaca ttgagaaggc ccggcaggcc aaggctcgcc cggagagcaa
      601 gccccacaag cagatgctca gtgagcgggc tcgcgagcgg aaggtgccag ttacgcggat
      661 tgggcggttg gccaactttg gaggtctggc cgtgggtctg ggcttcgggg ccctggccga
      721 ggtcgccaag aagagcctcc gccctgagga cccctcaggg aagaaggccg tgctggattc
      781 cagccccttc ctgtcagagg ccaacgcgga gcgcatcgtg cggacgctgt gcaaggtgcg
      841 cggggcggcg ctcaagctgg gccagatgct gagcatccag gacgacgcct tcatcaaccc
      901 ccatctggcc aagatcttcg agcgggtcag gcagagcgca gacttcatgc cgctgaagca
      961 gatgacgaaa actctcaaca acgacctggg ccccagctgg cgggacaagc tggagtactt
     1021 tgaggagcgg ccctttgcag ccgcctctat cgggcaggtg cacctggccc gcatgaaggg
     1081 cggccgcgag gtggccatga agatccagta ccccggcgtg gcccagagca tcagcagtga
     1141 cgtccacaac ctcatggccg tgctgaacat gagcaacatg cttccagaag gcctgttccc
     1201 tgagcacctg atcgacgtgc tgaggcggga gctgaccctc gagtgtgact accagcgaga
     1261 ggccgcctgt gcccgcaggt tcagggagct gctgaaggac caccccttct tctacgtgcc
     1321 cgagattgtg gacgagctct gcagccccca tgtgctgacc acggagctgg tgtccggctt
     1381 ccccctggac caggccgagg ggctgagcca ggagatccgg aatgagatct gctacaacat
     1441 cctggtcctg tgcctgaggg agctgttcga gttccacttc atgcagacag accccaactg
     1501 gtccaacttc ttttatgacc ctcagcagca caaggtggct cttctggact tcggggcgac
     1561 tcgggaatat gacagatcct tcacggacct ctacatccag atcatcaggg ctgctgctaa
     1621 ccaggacagg gaggccgtgc tgaagaagtc catcgagatg aagttcctca ccggctacga
     1681 ggtcaaggcc atggaagacg cccacttgga tgccatcctt atcctggggg aggcctttgc
     1741 ctcggaggag ccctttgact ttggcaccca gagcaccacc gagaagatcc acaacctgat
     1801 ccccgtcatg ctgaagcacc ggcttgtccc gccgcccgag gagacctact cgttgcacag
     1861 gaagatgggg ggctccttcc tcatctgctc caagctgaag gcccggttcc cctgcagggc
     1921 catgttcgag gaggcctaca gcaactaccg caggaggcag gccgagcagc agtagccgcg
     1981 ggcccggccg ctaggcggga ccctccgtcc tcctgccgct aaaactcgta ggaagccagt
     2041 ggtagccacg ctccgtttaa gcttcaccca gtgagagggg gccgcgctga tgggggggcc
     2101 gctgctcaga gcccgtggcc agcacttata cacggttctc atcgctgagt gggtgtgggg
     2161 tgagaggcgc cagcacggaa atgcagcccc gctgctgtct ggcagaatct gcttattgtt
     2221 tactcatcct ctgaaatgac tctcgataaa aagacgattt tatttccttt tcctttttgt
     2281 aacagggctt tttgctaatg tgaatggtaa ccaggagaag atgaggagaa gatgagagtt
     2341 ctccctttga atccctgcca ccaaaaaaaa aaaaaccaaa accaaaaaac agaaaagcct
     2401 ttttggattt tatggagtgt gtaatacaag gtttgtgtgt gtgtgtgttt ctagaatgag
     2461 atgtgtgttt tctgcctttt cctctccagc ttggatctgc acctgggaga agtgctgatc
     2521 tgagcagtgc cgacaagcac gacttctccg agcaaggccc acccacacct gctctctggc
     2581 tggttcctag aggctttttt tgacaagcag aggtttccag agaactgctg ccccctgcgg
     2641 ggaggggcgg gagccccaga aggggagaga aggccgcgtg ctctctgtgt gtgtgtgggc
     2701 ccttcttccc gctccggcgc ctgggccgtt tgtggaaggt gatgtgcacg tgtcatctgc
     2761 ttggacccga ggggtcgttt caggccgtta acctctgtac aattcttgta attgtctgat
     2821 ttacttgttt caattaaaga aaaaaatgct agca
//
LOCUS       XM_032648980            1885 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coenzyme Q8A (COQ8A), transcript variant
            X6, mRNA.
ACCESSION   XM_032648980
VERSION     XM_032648980.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1885
                     /gene="COQ8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762204"
     CDS             158..1777
                     /gene="COQ8A"
                     /codon_start=1
                     /product="atypical kinase COQ8A, mitochondrial isoform X2"
                     /protein_id="XP_032504871.1"
                     /db_xref="GeneID:116762204"
                     /translation="MASMLGDTIMVVKGLAKLTQAAVETHLQHLGLSRELIMAARALQ
                     STAAEQIRMVLGQVQGQEKHEESYTKSSDNPQAEFHSSGLRAEGASEELSAASSPDQS
                     PPPWDHARSQGPAPAYVASGPFREGGLRVQAASPMGRVNGPLFVDPRDPFSATGLQRR
                     FYHQDQSPVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGRLANFGG
                     LAVGLGFGALAEVAKKSLRPEDPSGKKAVLDSSPFLSEANAERIVRTLCKVRGAALKL
                     GQMLSIQDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNNDLGPSWRDKLEYFEERP
                     FAAASIGQVHLARMKGGREVAMKIQYPGVAQSISSDVHNLMAVLNMSNMLPEGLFPEH
                     LIDVLRRELTLECDYQREAACARRFRELLKDHPFFYVPEIVDELCSPHVLTTELVSGF
                     PLDQAEGLSQEIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFG
                     ATREYDRSFTDLYIQHLVPVDEAAATSGSGE"
     misc_feature    1037..1726
                     /gene="COQ8A"
                     /note="Activator of bc1 complex (ABC1) kinases, also
                     called aarF domain containing kinase 3; Region:
                     ABC1_ADCK3; cd13970"
                     /db_xref="CDD:270872"
     misc_feature    order(1199..1213,1217..1219,1247..1249,1253..1255,
                     1430..1432,1487..1498,1616..1618,1628..1633,1637..1639,
                     1670..1675)
                     /gene="COQ8A"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270872"
ORIGIN      
        1 cggcctgcgg ggcggggctc ccggcgctgg gtctctgggc tagggcgagc tggtaaacag
       61 atacggagtg catgccgggt gtctacgcta cggcgagcgc gcggaggctg cgcgaaggtg
      121 accgcggatc ccagcttcct gcagccggcc ctgaaggatg gcttccatgt tgggggacac
      181 catcatggtg gtcaaaggcc ttgccaagct gacccaggcg gccgtggaga cccacctgca
      241 gcacctgggc ctcagcaggg agctcattat ggcggccagg gccctgcagt ccacggccgc
      301 agagcagatc cgcatggtct tggggcaggt gcagggtcag gagaagcatg aagagtctta
      361 taccaagagc tctgacaacc cgcaagcaga attccactcc tcagggctga gggctgaggg
      421 cgcctccgag gagctgtctg cggcctcctc ccccgatcag tcccctccgc cctgggatca
      481 cgcccgcagc cagggcccag ctcctgccta tgttgccagc ggacccttta gggaaggcgg
      541 gctccgggtc caggccgcct cccctatggg cagggtgaac gggccgctct ttgtggaccc
      601 cagagaccca ttctctgcca cgggcctgca gcgaaggttc taccaccagg accagtcccc
      661 tgtggggggc ctgacggctg aggacattga gaaggcccgg caggccaagg ctcgcccgga
      721 gagcaagccc cacaagcaga tgctcagtga gcgggctcgc gagcggaagg tgccagttac
      781 gcggattggg cggttggcca actttggagg tctggccgtg ggtctgggct tcggggccct
      841 ggccgaggtc gccaagaaga gcctccgccc tgaggacccc tcagggaaga aggccgtgct
      901 ggattccagc cccttcctgt cagaggccaa cgcggagcgc atcgtgcgga cgctgtgcaa
      961 ggtgcgcggg gcggcgctca agctgggcca gatgctgagc atccaggacg acgccttcat
     1021 caacccccat ctggccaaga tcttcgagcg ggtcaggcag agcgcagact tcatgccgct
     1081 gaagcagatg acgaaaactc tcaacaacga cctgggcccc agctggcggg acaagctgga
     1141 gtactttgag gagcggccct ttgcagccgc ctctatcggg caggtgcacc tggcccgcat
     1201 gaagggcggc cgcgaggtgg ccatgaagat ccagtacccc ggcgtggccc agagcatcag
     1261 cagtgacgtc cacaacctca tggccgtgct gaacatgagc aacatgcttc cagaaggcct
     1321 gttccctgag cacctgatcg acgtgctgag gcgggagctg accctcgagt gtgactacca
     1381 gcgagaggcc gcctgtgccc gcaggttcag ggagctgctg aaggaccacc ccttcttcta
     1441 cgtgcccgag attgtggacg agctctgcag cccccatgtg ctgaccacgg agctggtgtc
     1501 cggcttcccc ctggaccagg ccgaggggct gagccaggag atccggaatg agatctgcta
     1561 caacatcctg gtcctgtgcc tgagggagct gttcgagttc cacttcatgc agacagaccc
     1621 caactggtcc aacttctttt atgaccctca gcagcacaag gtggctcttc tggacttcgg
     1681 ggcgactcgg gaatatgaca gatccttcac ggacctctac atccagcatt tggtgcccgt
     1741 ggatgaggcc gcagccacct cgggctcagg ggagtaaagc ggaaaggtgg gtgggccggc
     1801 agctggcctg tgtggggagg ggcagtgctg gctccctgga cccccaggag ctcccctctg
     1861 cgtgctgccc acggtccccc cctct
//
LOCUS       XM_032648990            2774 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coenzyme Q8A (COQ8A), transcript variant
            X7, mRNA.
ACCESSION   XM_032648990
VERSION     XM_032648990.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2774
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2774
                     /gene="COQ8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762204"
     CDS             360..1895
                     /gene="COQ8A"
                     /codon_start=1
                     /product="atypical kinase COQ8A, mitochondrial isoform X3"
                     /protein_id="XP_032504881.1"
                     /db_xref="GeneID:116762204"
                     /translation="MGRVNGPLFVDPRDPFSATGLQRRFYHQDQSPVGGLTAEDIEKA
                     RQAKARPESKPHKQMLSERARERKVPVTRIGRLANFGGLAVGLGFGALAEVAKKSLRP
                     EDPSGKKAVLDSSPFLSEANAERIVRTLCKVRGAALKLGQMLSIQDDAFINPHLAKIF
                     ERVRQSADFMPLKQMTKTLNNDLGPSWRDKLEYFEERPFAAASIGQVHLARMKGGREV
                     AMKIQYPGVAQSISSDVHNLMAVLNMSNMLPEGLFPEHLIDVLRRELTLECDYQREAA
                     CARRFRELLKDHPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEGLSQEIRNEICYNI
                     LVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFGATREYDRSFTDLYIQIIRAA
                     ANQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILGEAFASEEPFDFGTQSTTEKI
                     HNLIPVMLKHRLVPPPEETYSLHRKMGGSFLICSKLKARFPCRAMFEEAYSNYRRRQA
                     EQQ"
     misc_feature    831..1583
                     /gene="COQ8A"
                     /note="Activator of bc1 complex (ABC1) kinases, also
                     called aarF domain containing kinase 3; Region:
                     ABC1_ADCK3; cd13970"
                     /db_xref="CDD:270872"
     misc_feature    order(993..1007,1011..1013,1041..1043,1047..1049,
                     1224..1226,1281..1292,1410..1412,1422..1427,1431..1433,
                     1464..1469)
                     /gene="COQ8A"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270872"
ORIGIN      
        1 ccggcgctgg gtctctgggc tagggcgagc tggtaaacag atacggagtg catgccgggt
       61 gtctacgcta cggcgagcgc gcggaggctg cgcgaaggtg accgcggatc ccagcttcct
      121 gcagccgggg tcaggagaag catgaagagt cttataccaa gagctctgac aacccgcaag
      181 cagaattcca ctcctcaggg ctgagggctg agggcgcctc cgaggagctg tctgcggcct
      241 cctcccccga tcagtcccct ccgccctggg atcacgcccg cagccagggc ccagctcctg
      301 cctatgttgc cagcggaccc tttagggaag gcgggctccg ggtccaggcc gcctccccta
      361 tgggcagggt gaacgggccg ctctttgtgg accccagaga cccattctct gccacgggcc
      421 tgcagcgaag gttctaccac caggaccagt cccctgtggg gggcctgacg gctgaggaca
      481 ttgagaaggc ccggcaggcc aaggctcgcc cggagagcaa gccccacaag cagatgctca
      541 gtgagcgggc tcgcgagcgg aaggtgccag ttacgcggat tgggcggttg gccaactttg
      601 gaggtctggc cgtgggtctg ggcttcgggg ccctggccga ggtcgccaag aagagcctcc
      661 gccctgagga cccctcaggg aagaaggccg tgctggattc cagccccttc ctgtcagagg
      721 ccaacgcgga gcgcatcgtg cggacgctgt gcaaggtgcg cggggcggcg ctcaagctgg
      781 gccagatgct gagcatccag gacgacgcct tcatcaaccc ccatctggcc aagatcttcg
      841 agcgggtcag gcagagcgca gacttcatgc cgctgaagca gatgacgaaa actctcaaca
      901 acgacctggg ccccagctgg cgggacaagc tggagtactt tgaggagcgg ccctttgcag
      961 ccgcctctat cgggcaggtg cacctggccc gcatgaaggg cggccgcgag gtggccatga
     1021 agatccagta ccccggcgtg gcccagagca tcagcagtga cgtccacaac ctcatggccg
     1081 tgctgaacat gagcaacatg cttccagaag gcctgttccc tgagcacctg atcgacgtgc
     1141 tgaggcggga gctgaccctc gagtgtgact accagcgaga ggccgcctgt gcccgcaggt
     1201 tcagggagct gctgaaggac caccccttct tctacgtgcc cgagattgtg gacgagctct
     1261 gcagccccca tgtgctgacc acggagctgg tgtccggctt ccccctggac caggccgagg
     1321 ggctgagcca ggagatccgg aatgagatct gctacaacat cctggtcctg tgcctgaggg
     1381 agctgttcga gttccacttc atgcagacag accccaactg gtccaacttc ttttatgacc
     1441 ctcagcagca caaggtggct cttctggact tcggggcgac tcgggaatat gacagatcct
     1501 tcacggacct ctacatccag atcatcaggg ctgctgctaa ccaggacagg gaggccgtgc
     1561 tgaagaagtc catcgagatg aagttcctca ccggctacga ggtcaaggcc atggaagacg
     1621 cccacttgga tgccatcctt atcctggggg aggcctttgc ctcggaggag ccctttgact
     1681 ttggcaccca gagcaccacc gagaagatcc acaacctgat ccccgtcatg ctgaagcacc
     1741 ggcttgtccc gccgcccgag gagacctact cgttgcacag gaagatgggg ggctccttcc
     1801 tcatctgctc caagctgaag gcccggttcc cctgcagggc catgttcgag gaggcctaca
     1861 gcaactaccg caggaggcag gccgagcagc agtagccgcg ggcccggccg ctaggcggga
     1921 ccctccgtcc tcctgccgct aaaactcgta ggaagccagt ggtagccacg ctccgtttaa
     1981 gcttcaccca gtgagagggg gccgcgctga tgggggggcc gctgctcaga gcccgtggcc
     2041 agcacttata cacggttctc atcgctgagt gggtgtgggg tgagaggcgc cagcacggaa
     2101 atgcagcccc gctgctgtct ggcagaatct gcttattgtt tactcatcct ctgaaatgac
     2161 tctcgataaa aagacgattt tatttccttt tcctttttgt aacagggctt tttgctaatg
     2221 tgaatggtaa ccaggagaag atgaggagaa gatgagagtt ctccctttga atccctgcca
     2281 ccaaaaaaaa aaaaaccaaa accaaaaaac agaaaagcct ttttggattt tatggagtgt
     2341 gtaatacaag gtttgtgtgt gtgtgtgttt ctagaatgag atgtgtgttt tctgcctttt
     2401 cctctccagc ttggatctgc acctgggaga agtgctgatc tgagcagtgc cgacaagcac
     2461 gacttctccg agcaaggccc acccacacct gctctctggc tggttcctag aggctttttt
     2521 tgacaagcag aggtttccag agaactgctg ccccctgcgg ggaggggcgg gagccccaga
     2581 aggggagaga aggccgcgtg ctctctgtgt gtgtgtgggc ccttcttccc gctccggcgc
     2641 ctgggccgtt tgtggaaggt gatgtgcacg tgtcatctgc ttggacccga ggggtcgttt
     2701 caggccgtta acctctgtac aattcttgta attgtctgat ttacttgttt caattaaaga
     2761 aaaaaatgct agca
//
LOCUS       XM_032649003            2542 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphoglucomutase 1 (PGM1), transcript
            variant X1, mRNA.
ACCESSION   XM_032649003
VERSION     XM_032649003.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2542
                     /gene="PGM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762233"
     CDS             239..1840
                     /gene="PGM1"
                     /codon_start=1
                     /product="phosphoglucomutase-1 isoform X1"
                     /protein_id="XP_032504894.1"
                     /db_xref="GeneID:116762233"
                     /translation="MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSII
                     STVETAKRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCI
                     IRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEDYAIC
                     PDLHVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRSIFDFNALKELLSGPNRL
                     KIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETM
                     KTGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARS
                     MPTSGALDRVANATKITLYETPTGWKFFGNLMDASRLSLCGEESFGTGSDHIREKDGL
                     WAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKGLEALIS
                     DRSFVGKQFPVGDKVYTVAKIDNFEYSDPVDGSVSRNQHARKKETLLPFPGLAAHFCR
                     WFSHHLSTERHRECRRHRSTVRRQL"
     misc_feature    251..1702
                     /gene="PGM1"
                     /note="Phosphoglucomutase 1 (PGM1) catalyzes the
                     bidirectional interconversion of glucose-1-phosphate
                     (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
                     1,6-diphosphate intermediate, an important metabolic step
                     in prokaryotes and eukaryotes. In one direction; Region:
                     PGM1; cd03085"
                     /db_xref="CDD:100087"
     misc_feature    order(377..382,395..400,557..559,635..643,1337..1339)
                     /gene="PGM1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:100087"
     misc_feature    order(587..589,1100..1102,1106..1108,1112..1114)
                     /gene="PGM1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:100087"
ORIGIN      
        1 ggtggcctag gggtgggcgc tccccattcc cctccctctc ggacctgcaa ggaggtgggc
       61 tggccgcgaa gggagggccc tgtcccctgt ccctttaagg aggagggacg agcaccgctg
      121 agagagcctg tattgccctg acccgtcaga ggcctcacca cacagcagct gcagccacag
      181 ctccggtcgc ccctcgctta gcagagtccg ctcgggcccc aggaagctag tcgccaccat
      241 ggtgaagatc gtgaccgtta agaccaaggc gtaccaagac cagaagccgg gcacgagcgg
      301 gctgcggaag cgggtgaagg tgtttcagag cagcgcaaac tatgccgaga atttcatcca
      361 gagtatcatc tccaccgtgg agacggcaaa gcggcaggag gccaccctgg tggtgggcgg
      421 tgacggcagg ttctacatga aggaggccat ccagctcatc gtccgcatcg ccgccgccaa
      481 cgggatcggt cgcttggtta ttggacagaa tggaatcctc tccacccctg ctgtatcctg
      541 catcattaga aagatcaaag ccattggtgg gatcattctg acagccagcc acaacccagg
      601 aggacccaat ggagattttg gaatcaaatt caatatttcc aatggaggtc ctgccccgga
      661 agcaataact gataaaattt tccaaatcag caagacaatc gaagactatg caatttgtcc
      721 tgacctgcat gtagaccttg gggttctggg aaagcagcag tttgacctgg aaaacaagtt
      781 caaacccttc acagtggaaa ttgtggattc ggtggaagct tatgctacga tgctgagaag
      841 catctttgat ttcaacgcac tgaaagaact gctttctggt ccaaaccgac taaagatccg
      901 tatagacgcc atgcatggag ttgtgggacc gtatgtgaag aagatcctct gtgaagaact
      961 cggagccccc gcgaactcag cagttaactg tgttcccctg gaggactttg gaggccacca
     1021 ccctgacccc aacctcacct atgcagctga cctggtggag actatgaaga caggagagca
     1081 tgattttggg gctgcctttg atggagatgg ggatcgaaac atgattctgg gcaagcatgg
     1141 gttctttgtg aacccttcag actctgtggc tgtcattgct gccaacatct tcagcattcc
     1201 atatttccag caaaccgggg tccgcggctt tgcacgcagc atgcccacca gtggtgccct
     1261 ggaccgggtg gctaatgcta caaagatcac tttgtatgaa accccaactg gctggaagtt
     1321 ttttgggaat ctgatggatg caagcagact gtccctttgt ggggaggaga gcttcgggac
     1381 cggttctgac cacatccgtg agaaagacgg actctgggct gtccttgctt ggctctccat
     1441 cctagccacc cgcaaacaga gtgtggagga catcctcaaa gatcactggc aaaagtatgg
     1501 ccggaatttc ttcaccaggt atgattacga ggaggtggaa gccgagggcg caaacaaaat
     1561 gatgaagggc ttggaggccc tgatctctga tcgctccttc gtggggaaac agttcccagt
     1621 gggagataaa gtttacactg tggcgaaaat tgataacttt gaatacagtg atccggtgga
     1681 tggaagtgtt tcaagaaatc agcatgcgag gaaaaaagaa actctgttac ctttcccagg
     1741 gcttgcggct catttttgca gatggttctc gcatcatctt tcgactgagc ggcaccggga
     1801 gtgcaggcgc caccgttcga ctgtacgtcg acagctatga gaaggacatc gccaagatct
     1861 accaggaccc ccaggtcatg ttggctcccc ttatttctat tgccctgaag ttgtcccaac
     1921 tccaggaaag gacgggacgc actgcaccca ctgttatcac ctaagaagac aggccagatg
     1981 cggtacatcc ttccacccca ggccctccga gtcatctgat tgaagagcat gaacagaaac
     2041 aaagtgtatt cacccaggct ttttaggatt cggttcttcc actaaccagt catttgcaaa
     2101 tggtacaatt ccaagacatt gccaattgat atgcccgtag gagccatgca ggaaagagaa
     2161 aaaaaaggac ccaggggctt atactactgt cagctccttt ttgtgtcctc gtgcaccact
     2221 ggtgtgtggg tgtttgtctc cttagcacca ggtcctgttt acactacagt ggaagatgga
     2281 ggttgagcat cagctcatga ggctaatttc catccttagg atccacccgt gaaatgatag
     2341 cgcaagttcc tttctccttt gtgagccttt ccccccattt actgtttaca tataatccag
     2401 caaaatgcag tttctggtgc cttctctcca atcagttctt tcctcagagt gagacgtgct
     2461 tgtctacaga gttctgcctt gttctgtagc atagtcccat tcacacaaat attttgggat
     2521 attaaagcaa aataagctac ta
//
LOCUS       XM_032649011            2374 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphoglucomutase 1 (PGM1), transcript
            variant X2, mRNA.
ACCESSION   XM_032649011
VERSION     XM_032649011.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2374
                     /gene="PGM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 22
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762233"
     CDS             108..1796
                     /gene="PGM1"
                     /codon_start=1
                     /product="phosphoglucomutase-1 isoform X2"
                     /protein_id="XP_032504902.1"
                     /db_xref="GeneID:116762233"
                     /translation="MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSII
                     STVETAKRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCI
                     IRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEDYAIC
                     PDLHVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRSIFDFNALKELLSGPNRL
                     KIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETM
                     KTGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARS
                     MPTSGALDRVANATKITLYETPTGWKFFGNLMDASRLSLCGEESFGTGSDHIREKDGL
                     WAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKGLEALIS
                     DRSFVGKQFPVGDKVYTVAKIDNFEYSDPVDGSVSRNQGLRLIFADGSRIIFRLSGTG
                     SAGATVRLYVDSYEKDIAKIYQDPQVMLAPLISIALKLSQLQERTGRTAPTVIT"
     misc_feature    120..1793
                     /gene="PGM1"
                     /note="Phosphoglucomutase 1 (PGM1) catalyzes the
                     bidirectional interconversion of glucose-1-phosphate
                     (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
                     1,6-diphosphate intermediate, an important metabolic step
                     in prokaryotes and eukaryotes. In one direction; Region:
                     PGM1; cd03085"
                     /db_xref="CDD:100087"
     misc_feature    order(165..167,456..458,984..986,1113..1115,1176..1178,
                     1182..1184,1233..1235,1239..1241,1245..1247,1614..1616,
                     1620..1628,1650..1652)
                     /gene="PGM1"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100087"
     misc_feature    order(246..251,264..269,426..428,504..512,1206..1208)
                     /gene="PGM1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:100087"
     misc_feature    order(456..464,969..971,975..977,981..986,1182..1184,
                     1272..1274,1614..1616,1620..1628,1650..1652)
                     /gene="PGM1"
                     /note="active site"
                     /db_xref="CDD:100087"
     misc_feature    order(456..458,969..971,975..977,981..983)
                     /gene="PGM1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:100087"
ORIGIN      
        1 attgccctga cccgtcagag gcctcaccac acagcagctg cagccacagc tccggtcgcc
       61 cctcgcttag cagagtccgc tcgggcccca ggaagctagt cgccaccatg gtgaagatcg
      121 tgaccgttaa gaccaaggcg taccaagacc agaagccggg cacgagcggg ctgcggaagc
      181 gggtgaaggt gtttcagagc agcgcaaact atgccgagaa tttcatccag agtatcatct
      241 ccaccgtgga gacggcaaag cggcaggagg ccaccctggt ggtgggcggt gacggcaggt
      301 tctacatgaa ggaggccatc cagctcatcg tccgcatcgc cgccgccaac gggatcggtc
      361 gcttggttat tggacagaat ggaatcctct ccacccctgc tgtatcctgc atcattagaa
      421 agatcaaagc cattggtggg atcattctga cagccagcca caacccagga ggacccaatg
      481 gagattttgg aatcaaattc aatatttcca atggaggtcc tgccccggaa gcaataactg
      541 ataaaatttt ccaaatcagc aagacaatcg aagactatgc aatttgtcct gacctgcatg
      601 tagaccttgg ggttctggga aagcagcagt ttgacctgga aaacaagttc aaacccttca
      661 cagtggaaat tgtggattcg gtggaagctt atgctacgat gctgagaagc atctttgatt
      721 tcaacgcact gaaagaactg ctttctggtc caaaccgact aaagatccgt atagacgcca
      781 tgcatggagt tgtgggaccg tatgtgaaga agatcctctg tgaagaactc ggagcccccg
      841 cgaactcagc agttaactgt gttcccctgg aggactttgg aggccaccac cctgacccca
      901 acctcaccta tgcagctgac ctggtggaga ctatgaagac aggagagcat gattttgggg
      961 ctgcctttga tggagatggg gatcgaaaca tgattctggg caagcatggg ttctttgtga
     1021 acccttcaga ctctgtggct gtcattgctg ccaacatctt cagcattcca tatttccagc
     1081 aaaccggggt ccgcggcttt gcacgcagca tgcccaccag tggtgccctg gaccgggtgg
     1141 ctaatgctac aaagatcact ttgtatgaaa ccccaactgg ctggaagttt tttgggaatc
     1201 tgatggatgc aagcagactg tccctttgtg gggaggagag cttcgggacc ggttctgacc
     1261 acatccgtga gaaagacgga ctctgggctg tccttgcttg gctctccatc ctagccaccc
     1321 gcaaacagag tgtggaggac atcctcaaag atcactggca aaagtatggc cggaatttct
     1381 tcaccaggta tgattacgag gaggtggaag ccgagggcgc aaacaaaatg atgaagggct
     1441 tggaggccct gatctctgat cgctccttcg tggggaaaca gttcccagtg ggagataaag
     1501 tttacactgt ggcgaaaatt gataactttg aatacagtga tccggtggat ggaagtgttt
     1561 caagaaatca gggcttgcgg ctcatttttg cagatggttc tcgcatcatc tttcgactga
     1621 gcggcaccgg gagtgcaggc gccaccgttc gactgtacgt cgacagctat gagaaggaca
     1681 tcgccaagat ctaccaggac ccccaggtca tgttggctcc ccttatttct attgccctga
     1741 agttgtccca actccaggaa aggacgggac gcactgcacc cactgttatc acctaagaag
     1801 acaggccaga tgcggtacat ccttccaccc caggccctcc gagtcatctg attgaagagc
     1861 atgaacagaa acaaagtgta ttcacccagg ctttttagga ttcggttctt ccactaacca
     1921 gtcatttgca aatggtacaa ttccaagaca ttgccaattg atatgcccgt aggagccatg
     1981 caggaaagag aaaaaaaagg acccaggggc ttatactact gtcagctcct ttttgtgtcc
     2041 tcgtgcacca ctggtgtgtg ggtgtttgtc tccttagcac caggtcctgt ttacactaca
     2101 gtggaagatg gaggttgagc atcagctcat gaggctaatt tccatcctta ggatccaccc
     2161 gtgaaatgat agcgcaagtt cctttctcct ttgtgagcct ttccccccat ttactgttta
     2221 catataatcc agcaaaatgc agtttctggt gccttctctc caatcagttc tttcctcaga
     2281 gtgagacgtg cttgtctaca gagttctgcc ttgttctgta gcatagtccc attcacacaa
     2341 atattttggg atattaaagc aaaataagct acta
//
LOCUS       XM_032649023            9226 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear factor I A (NFIA), transcript
            variant X1, mRNA.
ACCESSION   XM_032649023
VERSION     XM_032649023.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9226
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9226
                     /gene="NFIA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762244"
     CDS             316..1899
                     /gene="NFIA"
                     /codon_start=1
                     /product="nuclear factor 1 A-type isoform X1"
                     /protein_id="XP_032504914.1"
                     /db_xref="GeneID:116762244"
                     /translation="MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKH
                     EKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPC
                     CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPG
                     LCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFV
                     TSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTK
                     RLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSP
                     SPSQTSSLGTAFTQHHRPVITGPREFKMVPSILSSPFWEIYSASPHATPSTLHFPTSP
                     IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFL
                     PTPMLPPPPPPPMARPVPLPVPDTKPPTTSAEGGAASPTSPTYSTPSTSPANRFVSVG
                     PRDPSFVNIPQQTQSWYLG"
     misc_feature    340..453
                     /gene="NFIA"
                     /note="Nuclear factor I protein pre-N-terminus; Region:
                     NfI_DNAbd_pre-N; pfam10524"
                     /db_xref="CDD:463134"
     misc_feature    517..831
                     /gene="NFIA"
                     /note="MH1 domain; Region: MH1; pfam03165"
                     /db_xref="CDD:460833"
     misc_feature    955..1872
                     /gene="NFIA"
                     /note="CTF/NF-I family transcription modulation region;
                     Region: CTF_NFI; pfam00859"
                     /db_xref="CDD:459967"
ORIGIN      
        1 ggcacccggc cggcgggcgc gggagctgga aagggtgcgc tatgccttta acgcccgcgt
       61 acagtagaca tgtatagtgg agtgtaggga aactctaggc ggggttaaag ttcagctcat
      121 ggagcggcaa tagcgctggc tggctgcagt tgagccgagt tggaaatgtg aacgcaagaa
      181 gcaggcttga tttatttttc tccccccttc tctctctctc ctcctctctc cctctttctc
      241 ctttctcacc cgcactcacg cacacctcca aaccgcacac ccagacgcac acgcacaccc
      301 caccgccggg cagtgatgta ttctccgctc tgtctcaccc aggatgaatt tcatcctttc
      361 atcgaagcac ttctgcccca cgtccgagcc ttcgcctaca catggttcaa cctgcaggcc
      421 cgaaaacgaa aatacttcaa aaaacatgaa aagcgtatgt caaaagaaga agagagagcc
      481 gtgaaggatg agttgctaag tgaaaaacca gaggtcaagc agaagtgggc atctcgactt
      541 ctggccaagt tgcggaaaga tatccgacct gagtaccgag aggattttgt tcttacagtc
      601 acagggaaaa agcctccgtg ttgtgttctt tccaacccag accagaaagg caagatgcga
      661 agaattgact gcctccgcca ggcagataaa gtctggaggt tggaccttgt tatggtgatt
      721 ttatttaaag gtattccgct tgaaagtact gatggcgagc gccttgtaaa gtccccgcag
      781 tgctctaatc cagggctctg tgtccagccc catcacatag gggtttctgt taaggaactc
      841 gatttatatt tggcatactt tgtgcatgca gcagattcaa gtcaatctga aagtcccagc
      901 cagccaagtg acgctgacat taaggaccag ccagaaaatg gacatttggg cttccaggac
      961 agttttgtca catcaggggt ttttagtgtg actgagctag taagagtgtc acagacacca
     1021 atagctgcag gaactggccc aaatttttct ctctcagatt tagaaagttc ttcatactac
     1081 agcatgagtc cgggagcaat gaggaggtca ttacccagca catcctctac cagctccaca
     1141 aagcgcctca agtctgtgga ggatgaaatg gacagtcctg gtgaagagcc attttacaca
     1201 ggccaagggc gctccccggg gagcggaagt cagtccagcg ggtggcatga agtggagcca
     1261 ggaatgccat ctccaaccac actgaagaag tcggagaagt ctggtttcag cagcccctcc
     1321 ccttcgcaga cctcctccct gggaacggca ttcacacagc atcaccgacc tgtcattaca
     1381 ggacccagag aattcaagat ggttcccagc atcctcagtt ctcctttctg ggaaatctac
     1441 tcagcaagtc cacatgcgac accatcaact cttcattttc caacatcacc catcatccag
     1501 cagcctgggc cttacttctc ccacccagcc atccgctatc accctcagga gacgctgaaa
     1561 gagtttgtcc aacttgtctg ccctgatgct ggtcagcagg ctggacaggt ggggttcctc
     1621 aatcccaacg ggagtagcca aggcaaagtg cacaacccat tcctccccac ccccatgttg
     1681 ccaccgccgc cgccaccacc gatggccagg cctgtgcctc tgccggtgcc agacacaaag
     1741 cctccgacca catcagcgga aggaggtgca gcgtccccca cctcaccaac ctactcgaca
     1801 cccagcacct cccccgcaaa ccgattcgtc agtgttggac cacgggatcc aagctttgta
     1861 aatatccctc aacagacaca gtcctggtac ctgggataaa agtcgcagcg tcccaccatc
     1921 caccagacag accacctgac cccttctcaa ctctgtaaca tggacgcatc ctcaacccag
     1981 cgcagttaca acttcactgt cactggaagg ggagaatcaa atcaacttgt acatggaaac
     2041 agcgagcatt atggtccaac agcaaaggcc ataacctttt gggatttttt ttttttaata
     2101 ctttagggac tgttgtaatt ttctcatatg gtgctggaaa tggttgggct ttgtaacatt
     2161 tgaagtgttt tccgtggtag cgtgagcatt aggcagtgtg gctggagaag gtctaccctt
     2221 gctcactgac ttcccgttgt gacacacttt ctttacggag cccggctgtt tcacagtatt
     2281 tcatgaattt acccacacag gtgtgagcct ccttgagcag tcaggagaca catggagaac
     2341 taagtctttt gtagtagctg agatctgcaa tatctaactt acgggacagt caaagggcaa
     2401 tgtttttctg taacatattg gaaaaagaaa acgcagttat gttccttttt tattttttct
     2461 tttagtttgg tttggttcag cagtcagcag taaactagat aacatggccc ggaaggacag
     2521 tgaatccact cacgttgcag aataattccg aaaatggcaa actactacta ctactattca
     2581 gttttttaaa cgttttgaaa tgctgcactt acattaaaaa aaaaaaaaaa aaaaattttt
     2641 tcaacaattt caacaatgac acacaaattc acatggaaat ggggaagatg gtctgttttg
     2701 acagaaactg acaggaatca atcaaaacaa tcgaattttg aattgagtaa agtgcaattt
     2761 cattggatag ctaaatatct ttgtaagata gagattgttg aaaattctat ttttgttttt
     2821 caagtcctcc caccccagga ctctaaatta ttggggtaaa aaacagcctt gcaagaaaaa
     2881 ggggagctat ttttgctttt tatgtttttt attgttaaac ttgtatccct ttaaaaactg
     2941 aaggaaaatt taaaaaaaaa aacaaaaaaa caaatctaat ggtgctttta ccacaatatg
     3001 ttaactacat taaatgctaa ttaattattt tctgttatca aagcacataa ctaaaatgaa
     3061 atcatggtat ctgttaattt tataagctag aagtcactat aatggattat gccaattctg
     3121 aaaattttta catgtatcag gcaacataag atttatcagt tatcagacac ttcattgttc
     3181 cagagattgt ccagaaattt taaagacctt tgcgcccctg aactgggcta tgggaaaata
     3241 atattaataa taataatgaa accaatactg acacaaatgc tggtgcccat tcagatcaag
     3301 ggtacttgtt agggaaaaat aaaagtttgc acccccaaat gtcctgtatc ttatgtaaaa
     3361 aaaaaaaaaa ccacaaaaaa caaacaaaaa aataacaaaa aaaagtgcaa gtgatttttc
     3421 taccagacag cgaagcaccc ctttgcttcc catgcaactt caagaaggtt tcctatacta
     3481 tacatatata tacgttctgg ttggcaagcc ctgctgatca gagaaagtct ctgcatgttc
     3541 tagtgttagt aactaatttt tatatagcta atgtaggata aagtagagtg cattaagaca
     3601 caatattgta atccctactc taggcacttg cctttaaact atgtttttca gcccttcaga
     3661 agggttctac tactgtccta tacaatcaag taactgaaat tcttgggaag acactttgct
     3721 cctcatcttt cccccccgaa acaatgttgt tttgttttgt tttttttcct taatttgcac
     3781 gaaaacaaaa attccatatc aatgtgcctt gccctggata gcgattattt gtggaattgt
     3841 tgcacatgct cctctattga aaggggtttt tccctagtca agcatttgga gacacttttt
     3901 gtaaatgtga cttttatgtc agccattgtc agtttcaaca tctagaacta aatagagagt
     3961 tagttgttcc gcagatagga gtagtcttta ttgtcctctg tggtcagtgg cagtgctatt
     4021 ctgagatctg tagatgctta gaatatcagt attttggatg ttgctgcatt ttacaattta
     4081 tttggagtct tcctttattc ccctccccgc ccccagatat atgaaaatat gcaatacctg
     4141 cttatatcgt gtagaaaagc ttagctatga ttaatttttc ttttattttt tttatttgac
     4201 caaagtcggt gctgcacttg acgcagtgtg ttttaggtgt ctgtctttgt actttatttg
     4261 tgatttttga atgcacgtgc gcaggaaggg ctcctcttag agaagcagtc aaactgtgaa
     4321 gcactaagct gaccctgctt caagcaattt tgtttttaca actgttcctt tcacaagcaa
     4381 gccttaaaaa aaaaaaaaaa gacaacttcc cttttcttca gctcccacac cccatttttc
     4441 ttagcagact gcagtcaatc cacattcaat acaaagtata taatgcccat ttttatatgc
     4501 acgtttttaa acttccaagt tctgaaaatt gtttactggt tatctctatt taaggaaaaa
     4561 aaaataaaat aaaacatttt ggattttcat atgtgtctga taagtggttg aatagtcgtt
     4621 tggcgctgtt gtatggtgtg attgtcagta tatggtgtca cttcctctag ccagccagca
     4681 tactttgcct tcccctatag cacttagctg ggcattactt tattatgaca tatgtgcact
     4741 aaaaaaagaa aaaagaaaaa aaaaaaaaaa gaaaaaaata gcagctttca gtgcttcaca
     4801 gtgaagggaa aaaagcctag acaaacattt tgtcagaacc ttgcgataag ccaaggtatt
     4861 accagtaaat tggttgtata tacaataaaa ttgcaccctt tttttaaaac aaaacaaact
     4921 aagcaatagt ttgggcagtt ttagttgttt ttagtgagca tgttgtagtc atgactgcaa
     4981 agagagagat taactgccca ctcagaagat atgtaatttg tattgttgta tagttttatt
     5041 gattacactg atttattcta ccctatttta taatgcagga cttttgtaat gttgtttaaa
     5101 tgaggaaaaa tttctgtcaa attagcctag tgaaatttct gattgttcat tataaaggca
     5161 gcgttcatag aatggctttt ctttctttcc tgccccccct ccctttggga actggattta
     5221 agtttaaaac tttcctgttt cctttttttt ttttgtaagt atttaaatac agttattttt
     5281 tctctctctc aatggtatag catattccta tgcttgagaa gtataggtct actgaaaaac
     5341 cattgtaaat ggacgttaca ggtatgctgt atttttgaag gtattttgtt gtattaagtt
     5401 tgatgaagct aaaattaggg aactctgaac agatttgcag gaaaaaaaat gttttaaagg
     5461 ctttaaaaca ttagggaggc agtctagggt gataacgaac aggggttaag tattaaacac
     5521 actaagttat atttttgttc atgtttcatt gtccagaaag cagcaggaaa ctgtagttca
     5581 gttgtgatca agcaggaaaa aagaaacacc aacaatatga gtgtttaacc tttttagact
     5641 caaagtcaag cgaagatttt tgaggaagac tttgctacct ggggtgtgta gactgacaga
     5701 ctgagggcca tccgtgtttg gaggcccagc ccttgattct gagatccatt tgaatttttt
     5761 ctctcccgtc aaatggcatt aacactattg gcaaagataa gtccctcaaa taactctcca
     5821 ttttcttctt tgggaactga agtcagaggc acaaacatta aatcatatca tttttctgta
     5881 tacttttttt ttttttctgg cccgtcccct tgccactaaa acgctccttg tctgattatt
     5941 cgtgggcaga ggacctcttt ccaatgccac tctatccatc ccacagtctt tttctttcct
     6001 ttgaggtttg aactaacttt tctgtttctt cataccctgg catgacagct cctccctgcc
     6061 ccacagtcag gcgtgggcta cgggcaagcc aaggcacact tcccaaagct tatattcttc
     6121 atactctgac cggtgaagtg taaaggaacc cagacttccc ggagtcaccg tattcaggca
     6181 gccatcagaa gatgcaaaac ccatctcaaa aagtttgtct ttcacttttc gaacccttat
     6241 cctcataggc tttgaactct gtagttacag tgtcataaag tatttatgaa atctggatta
     6301 agaaaaaaat ttttttcctt gtgattgttt tttttggggg gagggagttt ctaagaatgt
     6361 catttaatgt acttggcatc atatctgttt gtccctagtg gtggtggtct ctctctctct
     6421 ctctctcatt ctctttctct ctttctttct ttctttcttt ttttcctggt agcaggcctc
     6481 catagaacaa atttaaaaca caagtggcat ggtaatgtac ggagagcttc agtggcacct
     6541 caccacccac gctccgagat ctgtcctaag acataagaca gtctcagaaa gctgcactgc
     6601 cccacagcac agctttcatt taaatcagct tccaaggcca atctcgtcct gaagtcaatg
     6661 catgtattta ctgtttgaca gtaaacccgc tctgccttct ccacgtccaa ggctgtgcat
     6721 tcgtctaatt agtgtcgtgt atgttttcct tttatttttt ccaataaaaa agcagtggga
     6781 tgaaaattgc tttgatatat agcaggtaac attgaagcta ttccatagca cttaactgta
     6841 gtgaatactg tgtcaccaat tctgaaatca atttaatgtt taatgcaaat ccattacatg
     6901 gtgctattac aggctgacaa aatgatttac acaaatgtga caacttgggc tcaattcact
     6961 ctgctttcca acagtgtaaa tgcatagcag tgtttatctg catgagaact atgcactaat
     7021 ctatctgaag aaaaactata tcaactttgg tatctacttt ccgtttactt caatccttgc
     7081 ctttttggtc attgttataa tgccagcttt aggacagaaa gaattataag aaaaccagca
     7141 taatacctga tatattaaaa tgtagtgcct gtgaaatctg tattatattg ctcttctgaa
     7201 gtaagatttt tctacaccgg tagccttcgc tgtctgtcag tcaggacctt ctggtatagg
     7261 tgatgtaaaa taaccgtaca atattaatgc atgctattcc ataatgctta gtgaactgta
     7321 tgaatatccc tcaaagttat gttagtcttt ttttctgact tggttcttgt cagctaggtt
     7381 taaaggtatt tcactgagaa tgcaaattct gtcttttctt gatttcggct gttttcagta
     7441 ttttggaggt atacatttac ttaattcagt attacttgtg tttttgtttt cgtttttgtt
     7501 ttttgttttc tttttcctag gggacaagca tgggtgtttg atttcaaaaa tcagtccctg
     7561 gcaagacttt tgtctcaaaa cgaccatttg aatttcaaga actctgctct gaagacaccg
     7621 aggacatttc caaatgaggg acattttcct tcaccctcga ctgaagcttt gctgatcctg
     7681 aagcgttttc ttaatggaca gtgttcagcc aggtacccat gcttgatccg tcttcacacc
     7741 agacttcctc atataaaaga aaaaaaaaga aaaaaaaaat ctttatgaga tcacgtggct
     7801 atttagtttc acgcacagtt gcaatatttt cttcaaaaat aaaactgtac aaactttggg
     7861 cccgattcat aagaaaaaga aattggctat taacacggga tttttaaaat acaacttttt
     7921 tttttttttg gtctaaattt gaaatgactt gcttcccaaa tgaaatgttt catctctttt
     7981 tttttttttt tttcctaagc cagcactgat ctgcctttta tgccccaaag ggttacataa
     8041 tcaaattagg cggccgggga agtggggagc agataccaga aatgcccaga aagataaggg
     8101 ggaccacctg cccttgagca tggtaacggg ggaggcagca gcatgtaggg gtcaggacct
     8161 tgcctgtgtg ccatgcatca tgaatttcca cttgtggact cctgaatcta tttaattaaa
     8221 ataacacaat ctccgaagta tgtctggacc acaagcatat gtggtggaag tgccacctct
     8281 aatccaacca gagcaccttg agggtggaaa atactcccca gcgtgtgcga tgtgaacttg
     8341 tgtctctcca cggcggtttc aaggacaaat ggtgtccgat gaatggggct gtttttcctg
     8401 ctgtttttac gctcagcttc ttaaaataac acgagctttc ttcccttttt gattctattt
     8461 gtgttactct tattattttt aatttttttt agtaatagtc tataatttag cacttttttt
     8521 ttctcaaaca tctcaaccga aggccacaag gccactggct acgttgggat ggaggcttga
     8581 gagagctgcc ctttctccct ggtctccgac tgcctttctg cactgcaaag gcatttggta
     8641 gcatcaccac tgaggtacta gctagactca gagctggagc tttatcagat tctaggaggt
     8701 ccataaggaa gactttcaaa ggcaaataca cgaccccctc ccctactgcc ctgacctttt
     8761 accagaacat agttcaccgg gggcttttcc caccaccctt agtaatctgt ccgctcaaga
     8821 tacctcggtt tttttttcat ttcaaattgt gcggggaggg gattaaacac ttccagtgat
     8881 gagagagctg ttgtgacact aaacaccccc gtgttaataa gttggcttga catttgtttt
     8941 ttatgagccg ggccccttgt gcctctagta tacttgtatt gactctcata gatacccttt
     9001 tagtttgact gtgttctgtg aaaatttgta attggttgag aatcactgtg ggcgtccatt
     9061 cttattcaac taaatctcca caggtttttt gagctggtgt ggattagttt aactcttgta
     9121 ttcaaccatt agtgctacca ccttctcaca ttacaataca attactggaa gcaagtactg
     9181 catttcctat gcaacaaaaa aggaaaataa aaaattgcta atgcta
//
LOCUS       XM_032649031            8960 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear factor I A (NFIA), transcript
            variant X2, mRNA.
ACCESSION   XM_032649031
VERSION     XM_032649031.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8960
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8960
                     /gene="NFIA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762244"
     CDS             50..1633
                     /gene="NFIA"
                     /codon_start=1
                     /product="nuclear factor 1 A-type isoform X1"
                     /protein_id="XP_032504922.1"
                     /db_xref="GeneID:116762244"
                     /translation="MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKH
                     EKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPC
                     CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPG
                     LCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFV
                     TSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTK
                     RLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSP
                     SPSQTSSLGTAFTQHHRPVITGPREFKMVPSILSSPFWEIYSASPHATPSTLHFPTSP
                     IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFL
                     PTPMLPPPPPPPMARPVPLPVPDTKPPTTSAEGGAASPTSPTYSTPSTSPANRFVSVG
                     PRDPSFVNIPQQTQSWYLG"
     misc_feature    74..187
                     /gene="NFIA"
                     /note="Nuclear factor I protein pre-N-terminus; Region:
                     NfI_DNAbd_pre-N; pfam10524"
                     /db_xref="CDD:463134"
     misc_feature    251..565
                     /gene="NFIA"
                     /note="MH1 domain; Region: MH1; pfam03165"
                     /db_xref="CDD:460833"
     misc_feature    689..1606
                     /gene="NFIA"
                     /note="CTF/NF-I family transcription modulation region;
                     Region: CTF_NFI; pfam00859"
                     /db_xref="CDD:459967"
ORIGIN      
        1 tcctcactgc gttacccaac gcacacgcac accccaccgc cgggcagtga tgtattctcc
       61 gctctgtctc acccaggatg aatttcatcc tttcatcgaa gcacttctgc cccacgtccg
      121 agccttcgcc tacacatggt tcaacctgca ggcccgaaaa cgaaaatact tcaaaaaaca
      181 tgaaaagcgt atgtcaaaag aagaagagag agccgtgaag gatgagttgc taagtgaaaa
      241 accagaggtc aagcagaagt gggcatctcg acttctggcc aagttgcgga aagatatccg
      301 acctgagtac cgagaggatt ttgttcttac agtcacaggg aaaaagcctc cgtgttgtgt
      361 tctttccaac ccagaccaga aaggcaagat gcgaagaatt gactgcctcc gccaggcaga
      421 taaagtctgg aggttggacc ttgttatggt gattttattt aaaggtattc cgcttgaaag
      481 tactgatggc gagcgccttg taaagtcccc gcagtgctct aatccagggc tctgtgtcca
      541 gccccatcac ataggggttt ctgttaagga actcgattta tatttggcat actttgtgca
      601 tgcagcagat tcaagtcaat ctgaaagtcc cagccagcca agtgacgctg acattaagga
      661 ccagccagaa aatggacatt tgggcttcca ggacagtttt gtcacatcag gggtttttag
      721 tgtgactgag ctagtaagag tgtcacagac accaatagct gcaggaactg gcccaaattt
      781 ttctctctca gatttagaaa gttcttcata ctacagcatg agtccgggag caatgaggag
      841 gtcattaccc agcacatcct ctaccagctc cacaaagcgc ctcaagtctg tggaggatga
      901 aatggacagt cctggtgaag agccatttta cacaggccaa gggcgctccc cggggagcgg
      961 aagtcagtcc agcgggtggc atgaagtgga gccaggaatg ccatctccaa ccacactgaa
     1021 gaagtcggag aagtctggtt tcagcagccc ctccccttcg cagacctcct ccctgggaac
     1081 ggcattcaca cagcatcacc gacctgtcat tacaggaccc agagaattca agatggttcc
     1141 cagcatcctc agttctcctt tctgggaaat ctactcagca agtccacatg cgacaccatc
     1201 aactcttcat tttccaacat cacccatcat ccagcagcct gggccttact tctcccaccc
     1261 agccatccgc tatcaccctc aggagacgct gaaagagttt gtccaacttg tctgccctga
     1321 tgctggtcag caggctggac aggtggggtt cctcaatccc aacgggagta gccaaggcaa
     1381 agtgcacaac ccattcctcc ccacccccat gttgccaccg ccgccgccac caccgatggc
     1441 caggcctgtg cctctgccgg tgccagacac aaagcctccg accacatcag cggaaggagg
     1501 tgcagcgtcc cccacctcac caacctactc gacacccagc acctcccccg caaaccgatt
     1561 cgtcagtgtt ggaccacggg atccaagctt tgtaaatatc cctcaacaga cacagtcctg
     1621 gtacctggga taaaagtcgc agcgtcccac catccaccag acagaccacc tgaccccttc
     1681 tcaactctgt aacatggacg catcctcaac ccagcgcagt tacaacttca ctgtcactgg
     1741 aaggggagaa tcaaatcaac ttgtacatgg aaacagcgag cattatggtc caacagcaaa
     1801 ggccataacc ttttgggatt tttttttttt aatactttag ggactgttgt aattttctca
     1861 tatggtgctg gaaatggttg ggctttgtaa catttgaagt gttttccgtg gtagcgtgag
     1921 cattaggcag tgtggctgga gaaggtctac ccttgctcac tgacttcccg ttgtgacaca
     1981 ctttctttac ggagcccggc tgtttcacag tatttcatga atttacccac acaggtgtga
     2041 gcctccttga gcagtcagga gacacatgga gaactaagtc ttttgtagta gctgagatct
     2101 gcaatatcta acttacggga cagtcaaagg gcaatgtttt tctgtaacat attggaaaaa
     2161 gaaaacgcag ttatgttcct tttttatttt ttcttttagt ttggtttggt tcagcagtca
     2221 gcagtaaact agataacatg gcccggaagg acagtgaatc cactcacgtt gcagaataat
     2281 tccgaaaatg gcaaactact actactacta ttcagttttt taaacgtttt gaaatgctgc
     2341 acttacatta aaaaaaaaaa aaaaaaaaat tttttcaaca atttcaacaa tgacacacaa
     2401 attcacatgg aaatggggaa gatggtctgt tttgacagaa actgacagga atcaatcaaa
     2461 acaatcgaat tttgaattga gtaaagtgca atttcattgg atagctaaat atctttgtaa
     2521 gatagagatt gttgaaaatt ctatttttgt ttttcaagtc ctcccacccc aggactctaa
     2581 attattgggg taaaaaacag ccttgcaaga aaaaggggag ctatttttgc tttttatgtt
     2641 ttttattgtt aaacttgtat ccctttaaaa actgaaggaa aatttaaaaa aaaaaacaaa
     2701 aaaacaaatc taatggtgct tttaccacaa tatgttaact acattaaatg ctaattaatt
     2761 attttctgtt atcaaagcac ataactaaaa tgaaatcatg gtatctgtta attttataag
     2821 ctagaagtca ctataatgga ttatgccaat tctgaaaatt tttacatgta tcaggcaaca
     2881 taagatttat cagttatcag acacttcatt gttccagaga ttgtccagaa attttaaaga
     2941 cctttgcgcc cctgaactgg gctatgggaa aataatatta ataataataa tgaaaccaat
     3001 actgacacaa atgctggtgc ccattcagat caagggtact tgttagggaa aaataaaagt
     3061 ttgcaccccc aaatgtcctg tatcttatgt aaaaaaaaaa aaaaccacaa aaaacaaaca
     3121 aaaaaataac aaaaaaaagt gcaagtgatt tttctaccag acagcgaagc acccctttgc
     3181 ttcccatgca acttcaagaa ggtttcctat actatacata tatatacgtt ctggttggca
     3241 agccctgctg atcagagaaa gtctctgcat gttctagtgt tagtaactaa tttttatata
     3301 gctaatgtag gataaagtag agtgcattaa gacacaatat tgtaatccct actctaggca
     3361 cttgccttta aactatgttt ttcagccctt cagaagggtt ctactactgt cctatacaat
     3421 caagtaactg aaattcttgg gaagacactt tgctcctcat ctttcccccc cgaaacaatg
     3481 ttgttttgtt ttgttttttt tccttaattt gcacgaaaac aaaaattcca tatcaatgtg
     3541 ccttgccctg gatagcgatt atttgtggaa ttgttgcaca tgctcctcta ttgaaagggg
     3601 tttttcccta gtcaagcatt tggagacact ttttgtaaat gtgactttta tgtcagccat
     3661 tgtcagtttc aacatctaga actaaataga gagttagttg ttccgcagat aggagtagtc
     3721 tttattgtcc tctgtggtca gtggcagtgc tattctgaga tctgtagatg cttagaatat
     3781 cagtattttg gatgttgctg cattttacaa tttatttgga gtcttccttt attcccctcc
     3841 ccgcccccag atatatgaaa atatgcaata cctgcttata tcgtgtagaa aagcttagct
     3901 atgattaatt tttcttttat tttttttatt tgaccaaagt cggtgctgca cttgacgcag
     3961 tgtgttttag gtgtctgtct ttgtacttta tttgtgattt ttgaatgcac gtgcgcagga
     4021 agggctcctc ttagagaagc agtcaaactg tgaagcacta agctgaccct gcttcaagca
     4081 attttgtttt tacaactgtt cctttcacaa gcaagcctta aaaaaaaaaa aaaagacaac
     4141 ttcccttttc ttcagctccc acaccccatt tttcttagca gactgcagtc aatccacatt
     4201 caatacaaag tatataatgc ccatttttat atgcacgttt ttaaacttcc aagttctgaa
     4261 aattgtttac tggttatctc tatttaagga aaaaaaaata aaataaaaca ttttggattt
     4321 tcatatgtgt ctgataagtg gttgaatagt cgtttggcgc tgttgtatgg tgtgattgtc
     4381 agtatatggt gtcacttcct ctagccagcc agcatacttt gccttcccct atagcactta
     4441 gctgggcatt actttattat gacatatgtg cactaaaaaa agaaaaaaga aaaaaaaaaa
     4501 aaaagaaaaa aatagcagct ttcagtgctt cacagtgaag ggaaaaaagc ctagacaaac
     4561 attttgtcag aaccttgcga taagccaagg tattaccagt aaattggttg tatatacaat
     4621 aaaattgcac ccttttttta aaacaaaaca aactaagcaa tagtttgggc agttttagtt
     4681 gtttttagtg agcatgttgt agtcatgact gcaaagagag agattaactg cccactcaga
     4741 agatatgtaa tttgtattgt tgtatagttt tattgattac actgatttat tctaccctat
     4801 tttataatgc aggacttttg taatgttgtt taaatgagga aaaatttctg tcaaattagc
     4861 ctagtgaaat ttctgattgt tcattataaa ggcagcgttc atagaatggc ttttctttct
     4921 ttcctgcccc ccctcccttt gggaactgga tttaagttta aaactttcct gtttcctttt
     4981 ttttttttgt aagtatttaa atacagttat tttttctctc tctcaatggt atagcatatt
     5041 cctatgcttg agaagtatag gtctactgaa aaaccattgt aaatggacgt tacaggtatg
     5101 ctgtattttt gaaggtattt tgttgtatta agtttgatga agctaaaatt agggaactct
     5161 gaacagattt gcaggaaaaa aaatgtttta aaggctttaa aacattaggg aggcagtcta
     5221 gggtgataac gaacaggggt taagtattaa acacactaag ttatattttt gttcatgttt
     5281 cattgtccag aaagcagcag gaaactgtag ttcagttgtg atcaagcagg aaaaaagaaa
     5341 caccaacaat atgagtgttt aaccttttta gactcaaagt caagcgaaga tttttgagga
     5401 agactttgct acctggggtg tgtagactga cagactgagg gccatccgtg tttggaggcc
     5461 cagcccttga ttctgagatc catttgaatt ttttctctcc cgtcaaatgg cattaacact
     5521 attggcaaag ataagtccct caaataactc tccattttct tctttgggaa ctgaagtcag
     5581 aggcacaaac attaaatcat atcatttttc tgtatacttt tttttttttt ctggcccgtc
     5641 cccttgccac taaaacgctc cttgtctgat tattcgtggg cagaggacct ctttccaatg
     5701 ccactctatc catcccacag tctttttctt tcctttgagg tttgaactaa cttttctgtt
     5761 tcttcatacc ctggcatgac agctcctccc tgccccacag tcaggcgtgg gctacgggca
     5821 agccaaggca cacttcccaa agcttatatt cttcatactc tgaccggtga agtgtaaagg
     5881 aacccagact tcccggagtc accgtattca ggcagccatc agaagatgca aaacccatct
     5941 caaaaagttt gtctttcact tttcgaaccc ttatcctcat aggctttgaa ctctgtagtt
     6001 acagtgtcat aaagtattta tgaaatctgg attaagaaaa aaattttttt ccttgtgatt
     6061 gttttttttg gggggaggga gtttctaaga atgtcattta atgtacttgg catcatatct
     6121 gtttgtccct agtggtggtg gtctctctct ctctctctct cattctcttt ctctctttct
     6181 ttctttcttt ctttttttcc tggtagcagg cctccataga acaaatttaa aacacaagtg
     6241 gcatggtaat gtacggagag cttcagtggc acctcaccac ccacgctccg agatctgtcc
     6301 taagacataa gacagtctca gaaagctgca ctgccccaca gcacagcttt catttaaatc
     6361 agcttccaag gccaatctcg tcctgaagtc aatgcatgta tttactgttt gacagtaaac
     6421 ccgctctgcc ttctccacgt ccaaggctgt gcattcgtct aattagtgtc gtgtatgttt
     6481 tccttttatt ttttccaata aaaaagcagt gggatgaaaa ttgctttgat atatagcagg
     6541 taacattgaa gctattccat agcacttaac tgtagtgaat actgtgtcac caattctgaa
     6601 atcaatttaa tgtttaatgc aaatccatta catggtgcta ttacaggctg acaaaatgat
     6661 ttacacaaat gtgacaactt gggctcaatt cactctgctt tccaacagtg taaatgcata
     6721 gcagtgttta tctgcatgag aactatgcac taatctatct gaagaaaaac tatatcaact
     6781 ttggtatcta ctttccgttt acttcaatcc ttgccttttt ggtcattgtt ataatgccag
     6841 ctttaggaca gaaagaatta taagaaaacc agcataatac ctgatatatt aaaatgtagt
     6901 gcctgtgaaa tctgtattat attgctcttc tgaagtaaga tttttctaca ccggtagcct
     6961 tcgctgtctg tcagtcagga ccttctggta taggtgatgt aaaataaccg tacaatatta
     7021 atgcatgcta ttccataatg cttagtgaac tgtatgaata tccctcaaag ttatgttagt
     7081 ctttttttct gacttggttc ttgtcagcta ggtttaaagg tatttcactg agaatgcaaa
     7141 ttctgtcttt tcttgatttc ggctgttttc agtattttgg aggtatacat ttacttaatt
     7201 cagtattact tgtgtttttg ttttcgtttt tgttttttgt tttctttttc ctaggggaca
     7261 agcatgggtg tttgatttca aaaatcagtc cctggcaaga cttttgtctc aaaacgacca
     7321 tttgaatttc aagaactctg ctctgaagac accgaggaca tttccaaatg agggacattt
     7381 tccttcaccc tcgactgaag ctttgctgat cctgaagcgt tttcttaatg gacagtgttc
     7441 agccaggtac ccatgcttga tccgtcttca caccagactt cctcatataa aagaaaaaaa
     7501 aagaaaaaaa aaatctttat gagatcacgt ggctatttag tttcacgcac agttgcaata
     7561 ttttcttcaa aaataaaact gtacaaactt tgggcccgat tcataagaaa aagaaattgg
     7621 ctattaacac gggattttta aaatacaact tttttttttt tttggtctaa atttgaaatg
     7681 acttgcttcc caaatgaaat gtttcatctc tttttttttt tttttttcct aagccagcac
     7741 tgatctgcct tttatgcccc aaagggttac ataatcaaat taggcggccg gggaagtggg
     7801 gagcagatac cagaaatgcc cagaaagata agggggacca cctgcccttg agcatggtaa
     7861 cgggggaggc agcagcatgt aggggtcagg accttgcctg tgtgccatgc atcatgaatt
     7921 tccacttgtg gactcctgaa tctatttaat taaaataaca caatctccga agtatgtctg
     7981 gaccacaagc atatgtggtg gaagtgccac ctctaatcca accagagcac cttgagggtg
     8041 gaaaatactc cccagcgtgt gcgatgtgaa cttgtgtctc tccacggcgg tttcaaggac
     8101 aaatggtgtc cgatgaatgg ggctgttttt cctgctgttt ttacgctcag cttcttaaaa
     8161 taacacgagc tttcttccct ttttgattct atttgtgtta ctcttattat ttttaatttt
     8221 ttttagtaat agtctataat ttagcacttt ttttttctca aacatctcaa ccgaaggcca
     8281 caaggccact ggctacgttg ggatggaggc ttgagagagc tgccctttct ccctggtctc
     8341 cgactgcctt tctgcactgc aaaggcattt ggtagcatca ccactgaggt actagctaga
     8401 ctcagagctg gagctttatc agattctagg aggtccataa ggaagacttt caaaggcaaa
     8461 tacacgaccc cctcccctac tgccctgacc ttttaccaga acatagttca ccgggggctt
     8521 ttcccaccac ccttagtaat ctgtccgctc aagatacctc ggtttttttt tcatttcaaa
     8581 ttgtgcgggg aggggattaa acacttccag tgatgagaga gctgttgtga cactaaacac
     8641 ccccgtgtta ataagttggc ttgacatttg ttttttatga gccgggcccc ttgtgcctct
     8701 agtatacttg tattgactct catagatacc cttttagttt gactgtgttc tgtgaaaatt
     8761 tgtaattggt tgagaatcac tgtgggcgtc cattcttatt caactaaatc tccacaggtt
     8821 ttttgagctg gtgtggatta gtttaactct tgtattcaac cattagtgct accaccttct
     8881 cacattacaa tacaattact ggaagcaagt actgcatttc ctatgcaaca aaaaaggaaa
     8941 ataaaaaatt gctaatgcta
//
LOCUS       XM_032649040            9134 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear factor I A (NFIA), transcript
            variant X3, mRNA.
ACCESSION   XM_032649040
VERSION     XM_032649040.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9134
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9134
                     /gene="NFIA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762244"
     CDS             316..1866
                     /gene="NFIA"
                     /codon_start=1
                     /product="nuclear factor 1 A-type isoform X2"
                     /protein_id="XP_032504931.1"
                     /db_xref="GeneID:116762244"
                     /translation="MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKH
                     EKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPC
                     CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPG
                     LCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFV
                     TSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTK
                     RLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSP
                     SPSQTSSLGTAFTQHHRPVITGPREFKMVPSILSSPFWEIYSASPHATPSTLHFPTSP
                     IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFL
                     PTPMLPPPPPPPMARPVPLPVPDTKPPTTSAEGGAASPTSPILVPGIKVAASHHPPDR
                     PPDPFSTL"
     misc_feature    340..453
                     /gene="NFIA"
                     /note="Nuclear factor I protein pre-N-terminus; Region:
                     NfI_DNAbd_pre-N; pfam10524"
                     /db_xref="CDD:463134"
     misc_feature    517..831
                     /gene="NFIA"
                     /note="MH1 domain; Region: MH1; pfam03165"
                     /db_xref="CDD:460833"
     misc_feature    955..1788
                     /gene="NFIA"
                     /note="CTF/NF-I family transcription modulation region;
                     Region: CTF_NFI; pfam00859"
                     /db_xref="CDD:459967"
ORIGIN      
        1 ggcacccggc cggcgggcgc gggagctgga aagggtgcgc tatgccttta acgcccgcgt
       61 acagtagaca tgtatagtgg agtgtaggga aactctaggc ggggttaaag ttcagctcat
      121 ggagcggcaa tagcgctggc tggctgcagt tgagccgagt tggaaatgtg aacgcaagaa
      181 gcaggcttga tttatttttc tccccccttc tctctctctc ctcctctctc cctctttctc
      241 ctttctcacc cgcactcacg cacacctcca aaccgcacac ccagacgcac acgcacaccc
      301 caccgccggg cagtgatgta ttctccgctc tgtctcaccc aggatgaatt tcatcctttc
      361 atcgaagcac ttctgcccca cgtccgagcc ttcgcctaca catggttcaa cctgcaggcc
      421 cgaaaacgaa aatacttcaa aaaacatgaa aagcgtatgt caaaagaaga agagagagcc
      481 gtgaaggatg agttgctaag tgaaaaacca gaggtcaagc agaagtgggc atctcgactt
      541 ctggccaagt tgcggaaaga tatccgacct gagtaccgag aggattttgt tcttacagtc
      601 acagggaaaa agcctccgtg ttgtgttctt tccaacccag accagaaagg caagatgcga
      661 agaattgact gcctccgcca ggcagataaa gtctggaggt tggaccttgt tatggtgatt
      721 ttatttaaag gtattccgct tgaaagtact gatggcgagc gccttgtaaa gtccccgcag
      781 tgctctaatc cagggctctg tgtccagccc catcacatag gggtttctgt taaggaactc
      841 gatttatatt tggcatactt tgtgcatgca gcagattcaa gtcaatctga aagtcccagc
      901 cagccaagtg acgctgacat taaggaccag ccagaaaatg gacatttggg cttccaggac
      961 agttttgtca catcaggggt ttttagtgtg actgagctag taagagtgtc acagacacca
     1021 atagctgcag gaactggccc aaatttttct ctctcagatt tagaaagttc ttcatactac
     1081 agcatgagtc cgggagcaat gaggaggtca ttacccagca catcctctac cagctccaca
     1141 aagcgcctca agtctgtgga ggatgaaatg gacagtcctg gtgaagagcc attttacaca
     1201 ggccaagggc gctccccggg gagcggaagt cagtccagcg ggtggcatga agtggagcca
     1261 ggaatgccat ctccaaccac actgaagaag tcggagaagt ctggtttcag cagcccctcc
     1321 ccttcgcaga cctcctccct gggaacggca ttcacacagc atcaccgacc tgtcattaca
     1381 ggacccagag aattcaagat ggttcccagc atcctcagtt ctcctttctg ggaaatctac
     1441 tcagcaagtc cacatgcgac accatcaact cttcattttc caacatcacc catcatccag
     1501 cagcctgggc cttacttctc ccacccagcc atccgctatc accctcagga gacgctgaaa
     1561 gagtttgtcc aacttgtctg ccctgatgct ggtcagcagg ctggacaggt ggggttcctc
     1621 aatcccaacg ggagtagcca aggcaaagtg cacaacccat tcctccccac ccccatgttg
     1681 ccaccgccgc cgccaccacc gatggccagg cctgtgcctc tgccggtgcc agacacaaag
     1741 cctccgacca catcagcgga aggaggtgca gcgtccccca cctcaccaat cctggtacct
     1801 gggataaaag tcgcagcgtc ccaccatcca ccagacagac cacctgaccc cttctcaact
     1861 ctgtaacatg gacgcatcct caacccagcg cagttacaac ttcactgtca ctggaagggg
     1921 agaatcaaat caacttgtac atggaaacag cgagcattat ggtccaacag caaaggccat
     1981 aaccttttgg gatttttttt ttttaatact ttagggactg ttgtaatttt ctcatatggt
     2041 gctggaaatg gttgggcttt gtaacatttg aagtgttttc cgtggtagcg tgagcattag
     2101 gcagtgtggc tggagaaggt ctacccttgc tcactgactt cccgttgtga cacactttct
     2161 ttacggagcc cggctgtttc acagtatttc atgaatttac ccacacaggt gtgagcctcc
     2221 ttgagcagtc aggagacaca tggagaacta agtcttttgt agtagctgag atctgcaata
     2281 tctaacttac gggacagtca aagggcaatg tttttctgta acatattgga aaaagaaaac
     2341 gcagttatgt tcctttttta ttttttcttt tagtttggtt tggttcagca gtcagcagta
     2401 aactagataa catggcccgg aaggacagtg aatccactca cgttgcagaa taattccgaa
     2461 aatggcaaac tactactact actattcagt tttttaaacg ttttgaaatg ctgcacttac
     2521 attaaaaaaa aaaaaaaaaa aaattttttc aacaatttca acaatgacac acaaattcac
     2581 atggaaatgg ggaagatggt ctgttttgac agaaactgac aggaatcaat caaaacaatc
     2641 gaattttgaa ttgagtaaag tgcaatttca ttggatagct aaatatcttt gtaagataga
     2701 gattgttgaa aattctattt ttgtttttca agtcctccca ccccaggact ctaaattatt
     2761 ggggtaaaaa acagccttgc aagaaaaagg ggagctattt ttgcttttta tgttttttat
     2821 tgttaaactt gtatcccttt aaaaactgaa ggaaaattta aaaaaaaaaa caaaaaaaca
     2881 aatctaatgg tgcttttacc acaatatgtt aactacatta aatgctaatt aattattttc
     2941 tgttatcaaa gcacataact aaaatgaaat catggtatct gttaatttta taagctagaa
     3001 gtcactataa tggattatgc caattctgaa aatttttaca tgtatcaggc aacataagat
     3061 ttatcagtta tcagacactt cattgttcca gagattgtcc agaaatttta aagacctttg
     3121 cgcccctgaa ctgggctatg ggaaaataat attaataata ataatgaaac caatactgac
     3181 acaaatgctg gtgcccattc agatcaaggg tacttgttag ggaaaaataa aagtttgcac
     3241 ccccaaatgt cctgtatctt atgtaaaaaa aaaaaaaacc acaaaaaaca aacaaaaaaa
     3301 taacaaaaaa aagtgcaagt gatttttcta ccagacagcg aagcacccct ttgcttccca
     3361 tgcaacttca agaaggtttc ctatactata catatatata cgttctggtt ggcaagccct
     3421 gctgatcaga gaaagtctct gcatgttcta gtgttagtaa ctaattttta tatagctaat
     3481 gtaggataaa gtagagtgca ttaagacaca atattgtaat ccctactcta ggcacttgcc
     3541 tttaaactat gtttttcagc ccttcagaag ggttctacta ctgtcctata caatcaagta
     3601 actgaaattc ttgggaagac actttgctcc tcatctttcc cccccgaaac aatgttgttt
     3661 tgttttgttt tttttcctta atttgcacga aaacaaaaat tccatatcaa tgtgccttgc
     3721 cctggatagc gattatttgt ggaattgttg cacatgctcc tctattgaaa ggggtttttc
     3781 cctagtcaag catttggaga cactttttgt aaatgtgact tttatgtcag ccattgtcag
     3841 tttcaacatc tagaactaaa tagagagtta gttgttccgc agataggagt agtctttatt
     3901 gtcctctgtg gtcagtggca gtgctattct gagatctgta gatgcttaga atatcagtat
     3961 tttggatgtt gctgcatttt acaatttatt tggagtcttc ctttattccc ctccccgccc
     4021 ccagatatat gaaaatatgc aatacctgct tatatcgtgt agaaaagctt agctatgatt
     4081 aatttttctt ttattttttt tatttgacca aagtcggtgc tgcacttgac gcagtgtgtt
     4141 ttaggtgtct gtctttgtac tttatttgtg atttttgaat gcacgtgcgc aggaagggct
     4201 cctcttagag aagcagtcaa actgtgaagc actaagctga ccctgcttca agcaattttg
     4261 tttttacaac tgttcctttc acaagcaagc cttaaaaaaa aaaaaaaaga caacttccct
     4321 tttcttcagc tcccacaccc catttttctt agcagactgc agtcaatcca cattcaatac
     4381 aaagtatata atgcccattt ttatatgcac gtttttaaac ttccaagttc tgaaaattgt
     4441 ttactggtta tctctattta aggaaaaaaa aataaaataa aacattttgg attttcatat
     4501 gtgtctgata agtggttgaa tagtcgtttg gcgctgttgt atggtgtgat tgtcagtata
     4561 tggtgtcact tcctctagcc agccagcata ctttgccttc ccctatagca cttagctggg
     4621 cattacttta ttatgacata tgtgcactaa aaaaagaaaa aagaaaaaaa aaaaaaaaga
     4681 aaaaaatagc agctttcagt gcttcacagt gaagggaaaa aagcctagac aaacattttg
     4741 tcagaacctt gcgataagcc aaggtattac cagtaaattg gttgtatata caataaaatt
     4801 gcaccctttt tttaaaacaa aacaaactaa gcaatagttt gggcagtttt agttgttttt
     4861 agtgagcatg ttgtagtcat gactgcaaag agagagatta actgcccact cagaagatat
     4921 gtaatttgta ttgttgtata gttttattga ttacactgat ttattctacc ctattttata
     4981 atgcaggact tttgtaatgt tgtttaaatg aggaaaaatt tctgtcaaat tagcctagtg
     5041 aaatttctga ttgttcatta taaaggcagc gttcatagaa tggcttttct ttctttcctg
     5101 ccccccctcc ctttgggaac tggatttaag tttaaaactt tcctgtttcc tttttttttt
     5161 ttgtaagtat ttaaatacag ttattttttc tctctctcaa tggtatagca tattcctatg
     5221 cttgagaagt ataggtctac tgaaaaacca ttgtaaatgg acgttacagg tatgctgtat
     5281 ttttgaaggt attttgttgt attaagtttg atgaagctaa aattagggaa ctctgaacag
     5341 atttgcagga aaaaaaatgt tttaaaggct ttaaaacatt agggaggcag tctagggtga
     5401 taacgaacag gggttaagta ttaaacacac taagttatat ttttgttcat gtttcattgt
     5461 ccagaaagca gcaggaaact gtagttcagt tgtgatcaag caggaaaaaa gaaacaccaa
     5521 caatatgagt gtttaacctt tttagactca aagtcaagcg aagatttttg aggaagactt
     5581 tgctacctgg ggtgtgtaga ctgacagact gagggccatc cgtgtttgga ggcccagccc
     5641 ttgattctga gatccatttg aattttttct ctcccgtcaa atggcattaa cactattggc
     5701 aaagataagt ccctcaaata actctccatt ttcttctttg ggaactgaag tcagaggcac
     5761 aaacattaaa tcatatcatt tttctgtata cttttttttt ttttctggcc cgtccccttg
     5821 ccactaaaac gctccttgtc tgattattcg tgggcagagg acctctttcc aatgccactc
     5881 tatccatccc acagtctttt tctttccttt gaggtttgaa ctaacttttc tgtttcttca
     5941 taccctggca tgacagctcc tccctgcccc acagtcaggc gtgggctacg ggcaagccaa
     6001 ggcacacttc ccaaagctta tattcttcat actctgaccg gtgaagtgta aaggaaccca
     6061 gacttcccgg agtcaccgta ttcaggcagc catcagaaga tgcaaaaccc atctcaaaaa
     6121 gtttgtcttt cacttttcga acccttatcc tcataggctt tgaactctgt agttacagtg
     6181 tcataaagta tttatgaaat ctggattaag aaaaaaattt ttttccttgt gattgttttt
     6241 tttgggggga gggagtttct aagaatgtca tttaatgtac ttggcatcat atctgtttgt
     6301 ccctagtggt ggtggtctct ctctctctct ctctcattct ctttctctct ttctttcttt
     6361 ctttcttttt ttcctggtag caggcctcca tagaacaaat ttaaaacaca agtggcatgg
     6421 taatgtacgg agagcttcag tggcacctca ccacccacgc tccgagatct gtcctaagac
     6481 ataagacagt ctcagaaagc tgcactgccc cacagcacag ctttcattta aatcagcttc
     6541 caaggccaat ctcgtcctga agtcaatgca tgtatttact gtttgacagt aaacccgctc
     6601 tgccttctcc acgtccaagg ctgtgcattc gtctaattag tgtcgtgtat gttttccttt
     6661 tattttttcc aataaaaaag cagtgggatg aaaattgctt tgatatatag caggtaacat
     6721 tgaagctatt ccatagcact taactgtagt gaatactgtg tcaccaattc tgaaatcaat
     6781 ttaatgttta atgcaaatcc attacatggt gctattacag gctgacaaaa tgatttacac
     6841 aaatgtgaca acttgggctc aattcactct gctttccaac agtgtaaatg catagcagtg
     6901 tttatctgca tgagaactat gcactaatct atctgaagaa aaactatatc aactttggta
     6961 tctactttcc gtttacttca atccttgcct ttttggtcat tgttataatg ccagctttag
     7021 gacagaaaga attataagaa aaccagcata atacctgata tattaaaatg tagtgcctgt
     7081 gaaatctgta ttatattgct cttctgaagt aagatttttc tacaccggta gccttcgctg
     7141 tctgtcagtc aggaccttct ggtataggtg atgtaaaata accgtacaat attaatgcat
     7201 gctattccat aatgcttagt gaactgtatg aatatccctc aaagttatgt tagtcttttt
     7261 ttctgacttg gttcttgtca gctaggttta aaggtatttc actgagaatg caaattctgt
     7321 cttttcttga tttcggctgt tttcagtatt ttggaggtat acatttactt aattcagtat
     7381 tacttgtgtt tttgttttcg tttttgtttt ttgttttctt tttcctaggg gacaagcatg
     7441 ggtgtttgat ttcaaaaatc agtccctggc aagacttttg tctcaaaacg accatttgaa
     7501 tttcaagaac tctgctctga agacaccgag gacatttcca aatgagggac attttccttc
     7561 accctcgact gaagctttgc tgatcctgaa gcgttttctt aatggacagt gttcagccag
     7621 gtacccatgc ttgatccgtc ttcacaccag acttcctcat ataaaagaaa aaaaaagaaa
     7681 aaaaaaatct ttatgagatc acgtggctat ttagtttcac gcacagttgc aatattttct
     7741 tcaaaaataa aactgtacaa actttgggcc cgattcataa gaaaaagaaa ttggctatta
     7801 acacgggatt tttaaaatac aacttttttt tttttttggt ctaaatttga aatgacttgc
     7861 ttcccaaatg aaatgtttca tctctttttt tttttttttt tcctaagcca gcactgatct
     7921 gccttttatg ccccaaaggg ttacataatc aaattaggcg gccggggaag tggggagcag
     7981 ataccagaaa tgcccagaaa gataaggggg accacctgcc cttgagcatg gtaacggggg
     8041 aggcagcagc atgtaggggt caggaccttg cctgtgtgcc atgcatcatg aatttccact
     8101 tgtggactcc tgaatctatt taattaaaat aacacaatct ccgaagtatg tctggaccac
     8161 aagcatatgt ggtggaagtg ccacctctaa tccaaccaga gcaccttgag ggtggaaaat
     8221 actccccagc gtgtgcgatg tgaacttgtg tctctccacg gcggtttcaa ggacaaatgg
     8281 tgtccgatga atggggctgt ttttcctgct gtttttacgc tcagcttctt aaaataacac
     8341 gagctttctt ccctttttga ttctatttgt gttactctta ttatttttaa ttttttttag
     8401 taatagtcta taatttagca cttttttttt ctcaaacatc tcaaccgaag gccacaaggc
     8461 cactggctac gttgggatgg aggcttgaga gagctgccct ttctccctgg tctccgactg
     8521 cctttctgca ctgcaaaggc atttggtagc atcaccactg aggtactagc tagactcaga
     8581 gctggagctt tatcagattc taggaggtcc ataaggaaga ctttcaaagg caaatacacg
     8641 accccctccc ctactgccct gaccttttac cagaacatag ttcaccgggg gcttttccca
     8701 ccacccttag taatctgtcc gctcaagata cctcggtttt tttttcattt caaattgtgc
     8761 ggggagggga ttaaacactt ccagtgatga gagagctgtt gtgacactaa acacccccgt
     8821 gttaataagt tggcttgaca tttgtttttt atgagccggg ccccttgtgc ctctagtata
     8881 cttgtattga ctctcataga taccctttta gtttgactgt gttctgtgaa aatttgtaat
     8941 tggttgagaa tcactgtggg cgtccattct tattcaacta aatctccaca ggttttttga
     9001 gctggtgtgg attagtttaa ctcttgtatt caaccattag tgctaccacc ttctcacatt
     9061 acaatacaat tactggaagc aagtactgca tttcctatgc aacaaaaaag gaaaataaaa
     9121 aattgctaat gcta
//
LOCUS       XM_032649049            9230 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear factor I A (NFIA), transcript
            variant X4, mRNA.
ACCESSION   XM_032649049
VERSION     XM_032649049.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9230
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9230
                     /gene="NFIA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 31
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762244"
     CDS             374..1903
                     /gene="NFIA"
                     /codon_start=1
                     /product="nuclear factor 1 A-type isoform X3"
                     /protein_id="XP_032504940.1"
                     /db_xref="GeneID:116762244"
                     /translation="MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKH
                     EKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPC
                     CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPG
                     LCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFV
                     TSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTK
                     RLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSP
                     SPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHP
                     QETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVP
                     LPVPDTKPPTTSAEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYL
                     G"
     misc_feature    398..511
                     /gene="NFIA"
                     /note="Nuclear factor I protein pre-N-terminus; Region:
                     NfI_DNAbd_pre-N; pfam10524"
                     /db_xref="CDD:463134"
     misc_feature    575..889
                     /gene="NFIA"
                     /note="MH1 domain; Region: MH1; pfam03165"
                     /db_xref="CDD:460833"
     misc_feature    1013..1876
                     /gene="NFIA"
                     /note="CTF/NF-I family transcription modulation region;
                     Region: CTF_NFI; pfam00859"
                     /db_xref="CDD:459967"
ORIGIN      
        1 ggcggccgtg cggtgcggtg cagagcggag gcggaggcgg gcgcgcgggc agctcgcggg
       61 cacccggccg gcgggcgcgg gagctggaaa gggtgcgcta tgcctttaac gcccgcgtac
      121 agtagacatg tatagtggag tgtagggaaa ctctaggcgg ggttaaagtt cagctcatgg
      181 agcggcaata gcgctggctg gctgcagttg agccgagttg gaaatgtgaa cgcaagaagc
      241 aggcttgatt tatttttctc cccccttctc tctctctcct cctctctccc tctttctcct
      301 ttctcacccg cactcacgca cacctccaaa ccgcacaccc agacgcacac gcacacccca
      361 ccgccgggca gtgatgtatt ctccgctctg tctcacccag gatgaatttc atcctttcat
      421 cgaagcactt ctgccccacg tccgagcctt cgcctacaca tggttcaacc tgcaggcccg
      481 aaaacgaaaa tacttcaaaa aacatgaaaa gcgtatgtca aaagaagaag agagagccgt
      541 gaaggatgag ttgctaagtg aaaaaccaga ggtcaagcag aagtgggcat ctcgacttct
      601 ggccaagttg cggaaagata tccgacctga gtaccgagag gattttgttc ttacagtcac
      661 agggaaaaag cctccgtgtt gtgttctttc caacccagac cagaaaggca agatgcgaag
      721 aattgactgc ctccgccagg cagataaagt ctggaggttg gaccttgtta tggtgatttt
      781 atttaaaggt attccgcttg aaagtactga tggcgagcgc cttgtaaagt ccccgcagtg
      841 ctctaatcca gggctctgtg tccagcccca tcacataggg gtttctgtta aggaactcga
      901 tttatatttg gcatactttg tgcatgcagc agattcaagt caatctgaaa gtcccagcca
      961 gccaagtgac gctgacatta aggaccagcc agaaaatgga catttgggct tccaggacag
     1021 ttttgtcaca tcaggggttt ttagtgtgac tgagctagta agagtgtcac agacaccaat
     1081 agctgcagga actggcccaa atttttctct ctcagattta gaaagttctt catactacag
     1141 catgagtccg ggagcaatga ggaggtcatt acccagcaca tcctctacca gctccacaaa
     1201 gcgcctcaag tctgtggagg atgaaatgga cagtcctggt gaagagccat tttacacagg
     1261 ccaagggcgc tccccgggga gcggaagtca gtccagcggg tggcatgaag tggagccagg
     1321 aatgccatct ccaaccacac tgaagaagtc ggagaagtct ggtttcagca gcccctcccc
     1381 ttcgcagacc tcctccctgg gaacggcatt cacacagcat caccgacctg tcattacagg
     1441 acccagagca agtccacatg cgacaccatc aactcttcat tttccaacat cacccatcat
     1501 ccagcagcct gggccttact tctcccaccc agccatccgc tatcaccctc aggagacgct
     1561 gaaagagttt gtccaacttg tctgccctga tgctggtcag caggctggac aggtggggtt
     1621 cctcaatccc aacgggagta gccaaggcaa agtgcacaac ccattcctcc ccacccccat
     1681 gttgccaccg ccgccgccac caccgatggc caggcctgtg cctctgccgg tgccagacac
     1741 aaagcctccg accacatcag cggaaggagg tgcagcgtcc cccacctcac caacctactc
     1801 gacacccagc acctcccccg caaaccgatt cgtcagtgtt ggaccacggg atccaagctt
     1861 tgtaaatatc cctcaacaga cacagtcctg gtacctggga taaaagtcgc agcgtcccac
     1921 catccaccag acagaccacc tgaccccttc tcaactctgt aacatggacg catcctcaac
     1981 ccagcgcagt tacaacttca ctgtcactgg aaggggagaa tcaaatcaac ttgtacatgg
     2041 aaacagcgag cattatggtc caacagcaaa ggccataacc ttttgggatt tttttttttt
     2101 aatactttag ggactgttgt aattttctca tatggtgctg gaaatggttg ggctttgtaa
     2161 catttgaagt gttttccgtg gtagcgtgag cattaggcag tgtggctgga gaaggtctac
     2221 ccttgctcac tgacttcccg ttgtgacaca ctttctttac ggagcccggc tgtttcacag
     2281 tatttcatga atttacccac acaggtgtga gcctccttga gcagtcagga gacacatgga
     2341 gaactaagtc ttttgtagta gctgagatct gcaatatcta acttacggga cagtcaaagg
     2401 gcaatgtttt tctgtaacat attggaaaaa gaaaacgcag ttatgttcct tttttatttt
     2461 ttcttttagt ttggtttggt tcagcagtca gcagtaaact agataacatg gcccggaagg
     2521 acagtgaatc cactcacgtt gcagaataat tccgaaaatg gcaaactact actactacta
     2581 ttcagttttt taaacgtttt gaaatgctgc acttacatta aaaaaaaaaa aaaaaaaaat
     2641 tttttcaaca atttcaacaa tgacacacaa attcacatgg aaatggggaa gatggtctgt
     2701 tttgacagaa actgacagga atcaatcaaa acaatcgaat tttgaattga gtaaagtgca
     2761 atttcattgg atagctaaat atctttgtaa gatagagatt gttgaaaatt ctatttttgt
     2821 ttttcaagtc ctcccacccc aggactctaa attattgggg taaaaaacag ccttgcaaga
     2881 aaaaggggag ctatttttgc tttttatgtt ttttattgtt aaacttgtat ccctttaaaa
     2941 actgaaggaa aatttaaaaa aaaaaacaaa aaaacaaatc taatggtgct tttaccacaa
     3001 tatgttaact acattaaatg ctaattaatt attttctgtt atcaaagcac ataactaaaa
     3061 tgaaatcatg gtatctgtta attttataag ctagaagtca ctataatgga ttatgccaat
     3121 tctgaaaatt tttacatgta tcaggcaaca taagatttat cagttatcag acacttcatt
     3181 gttccagaga ttgtccagaa attttaaaga cctttgcgcc cctgaactgg gctatgggaa
     3241 aataatatta ataataataa tgaaaccaat actgacacaa atgctggtgc ccattcagat
     3301 caagggtact tgttagggaa aaataaaagt ttgcaccccc aaatgtcctg tatcttatgt
     3361 aaaaaaaaaa aaaaccacaa aaaacaaaca aaaaaataac aaaaaaaagt gcaagtgatt
     3421 tttctaccag acagcgaagc acccctttgc ttcccatgca acttcaagaa ggtttcctat
     3481 actatacata tatatacgtt ctggttggca agccctgctg atcagagaaa gtctctgcat
     3541 gttctagtgt tagtaactaa tttttatata gctaatgtag gataaagtag agtgcattaa
     3601 gacacaatat tgtaatccct actctaggca cttgccttta aactatgttt ttcagccctt
     3661 cagaagggtt ctactactgt cctatacaat caagtaactg aaattcttgg gaagacactt
     3721 tgctcctcat ctttcccccc cgaaacaatg ttgttttgtt ttgttttttt tccttaattt
     3781 gcacgaaaac aaaaattcca tatcaatgtg ccttgccctg gatagcgatt atttgtggaa
     3841 ttgttgcaca tgctcctcta ttgaaagggg tttttcccta gtcaagcatt tggagacact
     3901 ttttgtaaat gtgactttta tgtcagccat tgtcagtttc aacatctaga actaaataga
     3961 gagttagttg ttccgcagat aggagtagtc tttattgtcc tctgtggtca gtggcagtgc
     4021 tattctgaga tctgtagatg cttagaatat cagtattttg gatgttgctg cattttacaa
     4081 tttatttgga gtcttccttt attcccctcc ccgcccccag atatatgaaa atatgcaata
     4141 cctgcttata tcgtgtagaa aagcttagct atgattaatt tttcttttat tttttttatt
     4201 tgaccaaagt cggtgctgca cttgacgcag tgtgttttag gtgtctgtct ttgtacttta
     4261 tttgtgattt ttgaatgcac gtgcgcagga agggctcctc ttagagaagc agtcaaactg
     4321 tgaagcacta agctgaccct gcttcaagca attttgtttt tacaactgtt cctttcacaa
     4381 gcaagcctta aaaaaaaaaa aaaagacaac ttcccttttc ttcagctccc acaccccatt
     4441 tttcttagca gactgcagtc aatccacatt caatacaaag tatataatgc ccatttttat
     4501 atgcacgttt ttaaacttcc aagttctgaa aattgtttac tggttatctc tatttaagga
     4561 aaaaaaaata aaataaaaca ttttggattt tcatatgtgt ctgataagtg gttgaatagt
     4621 cgtttggcgc tgttgtatgg tgtgattgtc agtatatggt gtcacttcct ctagccagcc
     4681 agcatacttt gccttcccct atagcactta gctgggcatt actttattat gacatatgtg
     4741 cactaaaaaa agaaaaaaga aaaaaaaaaa aaaagaaaaa aatagcagct ttcagtgctt
     4801 cacagtgaag ggaaaaaagc ctagacaaac attttgtcag aaccttgcga taagccaagg
     4861 tattaccagt aaattggttg tatatacaat aaaattgcac ccttttttta aaacaaaaca
     4921 aactaagcaa tagtttgggc agttttagtt gtttttagtg agcatgttgt agtcatgact
     4981 gcaaagagag agattaactg cccactcaga agatatgtaa tttgtattgt tgtatagttt
     5041 tattgattac actgatttat tctaccctat tttataatgc aggacttttg taatgttgtt
     5101 taaatgagga aaaatttctg tcaaattagc ctagtgaaat ttctgattgt tcattataaa
     5161 ggcagcgttc atagaatggc ttttctttct ttcctgcccc ccctcccttt gggaactgga
     5221 tttaagttta aaactttcct gtttcctttt ttttttttgt aagtatttaa atacagttat
     5281 tttttctctc tctcaatggt atagcatatt cctatgcttg agaagtatag gtctactgaa
     5341 aaaccattgt aaatggacgt tacaggtatg ctgtattttt gaaggtattt tgttgtatta
     5401 agtttgatga agctaaaatt agggaactct gaacagattt gcaggaaaaa aaatgtttta
     5461 aaggctttaa aacattaggg aggcagtcta gggtgataac gaacaggggt taagtattaa
     5521 acacactaag ttatattttt gttcatgttt cattgtccag aaagcagcag gaaactgtag
     5581 ttcagttgtg atcaagcagg aaaaaagaaa caccaacaat atgagtgttt aaccttttta
     5641 gactcaaagt caagcgaaga tttttgagga agactttgct acctggggtg tgtagactga
     5701 cagactgagg gccatccgtg tttggaggcc cagcccttga ttctgagatc catttgaatt
     5761 ttttctctcc cgtcaaatgg cattaacact attggcaaag ataagtccct caaataactc
     5821 tccattttct tctttgggaa ctgaagtcag aggcacaaac attaaatcat atcatttttc
     5881 tgtatacttt tttttttttt ctggcccgtc cccttgccac taaaacgctc cttgtctgat
     5941 tattcgtggg cagaggacct ctttccaatg ccactctatc catcccacag tctttttctt
     6001 tcctttgagg tttgaactaa cttttctgtt tcttcatacc ctggcatgac agctcctccc
     6061 tgccccacag tcaggcgtgg gctacgggca agccaaggca cacttcccaa agcttatatt
     6121 cttcatactc tgaccggtga agtgtaaagg aacccagact tcccggagtc accgtattca
     6181 ggcagccatc agaagatgca aaacccatct caaaaagttt gtctttcact tttcgaaccc
     6241 ttatcctcat aggctttgaa ctctgtagtt acagtgtcat aaagtattta tgaaatctgg
     6301 attaagaaaa aaattttttt ccttgtgatt gttttttttg gggggaggga gtttctaaga
     6361 atgtcattta atgtacttgg catcatatct gtttgtccct agtggtggtg gtctctctct
     6421 ctctctctct cattctcttt ctctctttct ttctttcttt ctttttttcc tggtagcagg
     6481 cctccataga acaaatttaa aacacaagtg gcatggtaat gtacggagag cttcagtggc
     6541 acctcaccac ccacgctccg agatctgtcc taagacataa gacagtctca gaaagctgca
     6601 ctgccccaca gcacagcttt catttaaatc agcttccaag gccaatctcg tcctgaagtc
     6661 aatgcatgta tttactgttt gacagtaaac ccgctctgcc ttctccacgt ccaaggctgt
     6721 gcattcgtct aattagtgtc gtgtatgttt tccttttatt ttttccaata aaaaagcagt
     6781 gggatgaaaa ttgctttgat atatagcagg taacattgaa gctattccat agcacttaac
     6841 tgtagtgaat actgtgtcac caattctgaa atcaatttaa tgtttaatgc aaatccatta
     6901 catggtgcta ttacaggctg acaaaatgat ttacacaaat gtgacaactt gggctcaatt
     6961 cactctgctt tccaacagtg taaatgcata gcagtgttta tctgcatgag aactatgcac
     7021 taatctatct gaagaaaaac tatatcaact ttggtatcta ctttccgttt acttcaatcc
     7081 ttgccttttt ggtcattgtt ataatgccag ctttaggaca gaaagaatta taagaaaacc
     7141 agcataatac ctgatatatt aaaatgtagt gcctgtgaaa tctgtattat attgctcttc
     7201 tgaagtaaga tttttctaca ccggtagcct tcgctgtctg tcagtcagga ccttctggta
     7261 taggtgatgt aaaataaccg tacaatatta atgcatgcta ttccataatg cttagtgaac
     7321 tgtatgaata tccctcaaag ttatgttagt ctttttttct gacttggttc ttgtcagcta
     7381 ggtttaaagg tatttcactg agaatgcaaa ttctgtcttt tcttgatttc ggctgttttc
     7441 agtattttgg aggtatacat ttacttaatt cagtattact tgtgtttttg ttttcgtttt
     7501 tgttttttgt tttctttttc ctaggggaca agcatgggtg tttgatttca aaaatcagtc
     7561 cctggcaaga cttttgtctc aaaacgacca tttgaatttc aagaactctg ctctgaagac
     7621 accgaggaca tttccaaatg agggacattt tccttcaccc tcgactgaag ctttgctgat
     7681 cctgaagcgt tttcttaatg gacagtgttc agccaggtac ccatgcttga tccgtcttca
     7741 caccagactt cctcatataa aagaaaaaaa aagaaaaaaa aaatctttat gagatcacgt
     7801 ggctatttag tttcacgcac agttgcaata ttttcttcaa aaataaaact gtacaaactt
     7861 tgggcccgat tcataagaaa aagaaattgg ctattaacac gggattttta aaatacaact
     7921 tttttttttt tttggtctaa atttgaaatg acttgcttcc caaatgaaat gtttcatctc
     7981 tttttttttt tttttttcct aagccagcac tgatctgcct tttatgcccc aaagggttac
     8041 ataatcaaat taggcggccg gggaagtggg gagcagatac cagaaatgcc cagaaagata
     8101 agggggacca cctgcccttg agcatggtaa cgggggaggc agcagcatgt aggggtcagg
     8161 accttgcctg tgtgccatgc atcatgaatt tccacttgtg gactcctgaa tctatttaat
     8221 taaaataaca caatctccga agtatgtctg gaccacaagc atatgtggtg gaagtgccac
     8281 ctctaatcca accagagcac cttgagggtg gaaaatactc cccagcgtgt gcgatgtgaa
     8341 cttgtgtctc tccacggcgg tttcaaggac aaatggtgtc cgatgaatgg ggctgttttt
     8401 cctgctgttt ttacgctcag cttcttaaaa taacacgagc tttcttccct ttttgattct
     8461 atttgtgtta ctcttattat ttttaatttt ttttagtaat agtctataat ttagcacttt
     8521 ttttttctca aacatctcaa ccgaaggcca caaggccact ggctacgttg ggatggaggc
     8581 ttgagagagc tgccctttct ccctggtctc cgactgcctt tctgcactgc aaaggcattt
     8641 ggtagcatca ccactgaggt actagctaga ctcagagctg gagctttatc agattctagg
     8701 aggtccataa ggaagacttt caaaggcaaa tacacgaccc cctcccctac tgccctgacc
     8761 ttttaccaga acatagttca ccgggggctt ttcccaccac ccttagtaat ctgtccgctc
     8821 aagatacctc ggtttttttt tcatttcaaa ttgtgcgggg aggggattaa acacttccag
     8881 tgatgagaga gctgttgtga cactaaacac ccccgtgtta ataagttggc ttgacatttg
     8941 ttttttatga gccgggcccc ttgtgcctct agtatacttg tattgactct catagatacc
     9001 cttttagttt gactgtgttc tgtgaaaatt tgtaattggt tgagaatcac tgtgggcgtc
     9061 cattcttatt caactaaatc tccacaggtt ttttgagctg gtgtggatta gtttaactct
     9121 tgtattcaac cattagtgct accaccttct cacattacaa tacaattact ggaagcaagt
     9181 actgcatttc ctatgcaaca aaaaaggaaa ataaaaaatt gctaatgcta
//
LOCUS       XM_032649056            9080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear factor I A (NFIA), transcript
            variant X5, mRNA.
ACCESSION   XM_032649056
VERSION     XM_032649056.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9080
                     /gene="NFIA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 21 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762244"
     CDS             316..1812
                     /gene="NFIA"
                     /codon_start=1
                     /product="nuclear factor 1 A-type isoform X4"
                     /protein_id="XP_032504947.1"
                     /db_xref="GeneID:116762244"
                     /translation="MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKH
                     EKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPC
                     CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPG
                     LCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFV
                     TSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTK
                     RLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSP
                     SPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHP
                     QETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVP
                     LPVPDTKPPTTSAEGGAASPTSPILVPGIKVAASHHPPDRPPDPFSTL"
     misc_feature    340..453
                     /gene="NFIA"
                     /note="Nuclear factor I protein pre-N-terminus; Region:
                     NfI_DNAbd_pre-N; pfam10524"
                     /db_xref="CDD:463134"
     misc_feature    517..831
                     /gene="NFIA"
                     /note="MH1 domain; Region: MH1; pfam03165"
                     /db_xref="CDD:460833"
     misc_feature    955..1734
                     /gene="NFIA"
                     /note="CTF/NF-I family transcription modulation region;
                     Region: CTF_NFI; pfam00859"
                     /db_xref="CDD:459967"
ORIGIN      
        1 ggcacccggc cggcgggcgc gggagctgga aagggtgcgc tatgccttta acgcccgcgt
       61 acagtagaca tgtatagtgg agtgtaggga aactctaggc ggggttaaag ttcagctcat
      121 ggagcggcaa tagcgctggc tggctgcagt tgagccgagt tggaaatgtg aacgcaagaa
      181 gcaggcttga tttatttttc tccccccttc tctctctctc ctcctctctc cctctttctc
      241 ctttctcacc cgcactcacg cacacctcca aaccgcacac ccagacgcac acgcacaccc
      301 caccgccggg cagtgatgta ttctccgctc tgtctcaccc aggatgaatt tcatcctttc
      361 atcgaagcac ttctgcccca cgtccgagcc ttcgcctaca catggttcaa cctgcaggcc
      421 cgaaaacgaa aatacttcaa aaaacatgaa aagcgtatgt caaaagaaga agagagagcc
      481 gtgaaggatg agttgctaag tgaaaaacca gaggtcaagc agaagtgggc atctcgactt
      541 ctggccaagt tgcggaaaga tatccgacct gagtaccgag aggattttgt tcttacagtc
      601 acagggaaaa agcctccgtg ttgtgttctt tccaacccag accagaaagg caagatgcga
      661 agaattgact gcctccgcca ggcagataaa gtctggaggt tggaccttgt tatggtgatt
      721 ttatttaaag gtattccgct tgaaagtact gatggcgagc gccttgtaaa gtccccgcag
      781 tgctctaatc cagggctctg tgtccagccc catcacatag gggtttctgt taaggaactc
      841 gatttatatt tggcatactt tgtgcatgca gcagattcaa gtcaatctga aagtcccagc
      901 cagccaagtg acgctgacat taaggaccag ccagaaaatg gacatttggg cttccaggac
      961 agttttgtca catcaggggt ttttagtgtg actgagctag taagagtgtc acagacacca
     1021 atagctgcag gaactggccc aaatttttct ctctcagatt tagaaagttc ttcatactac
     1081 agcatgagtc cgggagcaat gaggaggtca ttacccagca catcctctac cagctccaca
     1141 aagcgcctca agtctgtgga ggatgaaatg gacagtcctg gtgaagagcc attttacaca
     1201 ggccaagggc gctccccggg gagcggaagt cagtccagcg ggtggcatga agtggagcca
     1261 ggaatgccat ctccaaccac actgaagaag tcggagaagt ctggtttcag cagcccctcc
     1321 ccttcgcaga cctcctccct gggaacggca ttcacacagc atcaccgacc tgtcattaca
     1381 ggacccagag caagtccaca tgcgacacca tcaactcttc attttccaac atcacccatc
     1441 atccagcagc ctgggcctta cttctcccac ccagccatcc gctatcaccc tcaggagacg
     1501 ctgaaagagt ttgtccaact tgtctgccct gatgctggtc agcaggctgg acaggtgggg
     1561 ttcctcaatc ccaacgggag tagccaaggc aaagtgcaca acccattcct ccccaccccc
     1621 atgttgccac cgccgccgcc accaccgatg gccaggcctg tgcctctgcc ggtgccagac
     1681 acaaagcctc cgaccacatc agcggaagga ggtgcagcgt cccccacctc accaatcctg
     1741 gtacctggga taaaagtcgc agcgtcccac catccaccag acagaccacc tgaccccttc
     1801 tcaactctgt aacatggacg catcctcaac ccagcgcagt tacaacttca ctgtcactgg
     1861 aaggggagaa tcaaatcaac ttgtacatgg aaacagcgag cattatggtc caacagcaaa
     1921 ggccataacc ttttgggatt tttttttttt aatactttag ggactgttgt aattttctca
     1981 tatggtgctg gaaatggttg ggctttgtaa catttgaagt gttttccgtg gtagcgtgag
     2041 cattaggcag tgtggctgga gaaggtctac ccttgctcac tgacttcccg ttgtgacaca
     2101 ctttctttac ggagcccggc tgtttcacag tatttcatga atttacccac acaggtgtga
     2161 gcctccttga gcagtcagga gacacatgga gaactaagtc ttttgtagta gctgagatct
     2221 gcaatatcta acttacggga cagtcaaagg gcaatgtttt tctgtaacat attggaaaaa
     2281 gaaaacgcag ttatgttcct tttttatttt ttcttttagt ttggtttggt tcagcagtca
     2341 gcagtaaact agataacatg gcccggaagg acagtgaatc cactcacgtt gcagaataat
     2401 tccgaaaatg gcaaactact actactacta ttcagttttt taaacgtttt gaaatgctgc
     2461 acttacatta aaaaaaaaaa aaaaaaaaat tttttcaaca atttcaacaa tgacacacaa
     2521 attcacatgg aaatggggaa gatggtctgt tttgacagaa actgacagga atcaatcaaa
     2581 acaatcgaat tttgaattga gtaaagtgca atttcattgg atagctaaat atctttgtaa
     2641 gatagagatt gttgaaaatt ctatttttgt ttttcaagtc ctcccacccc aggactctaa
     2701 attattgggg taaaaaacag ccttgcaaga aaaaggggag ctatttttgc tttttatgtt
     2761 ttttattgtt aaacttgtat ccctttaaaa actgaaggaa aatttaaaaa aaaaaacaaa
     2821 aaaacaaatc taatggtgct tttaccacaa tatgttaact acattaaatg ctaattaatt
     2881 attttctgtt atcaaagcac ataactaaaa tgaaatcatg gtatctgtta attttataag
     2941 ctagaagtca ctataatgga ttatgccaat tctgaaaatt tttacatgta tcaggcaaca
     3001 taagatttat cagttatcag acacttcatt gttccagaga ttgtccagaa attttaaaga
     3061 cctttgcgcc cctgaactgg gctatgggaa aataatatta ataataataa tgaaaccaat
     3121 actgacacaa atgctggtgc ccattcagat caagggtact tgttagggaa aaataaaagt
     3181 ttgcaccccc aaatgtcctg tatcttatgt aaaaaaaaaa aaaaccacaa aaaacaaaca
     3241 aaaaaataac aaaaaaaagt gcaagtgatt tttctaccag acagcgaagc acccctttgc
     3301 ttcccatgca acttcaagaa ggtttcctat actatacata tatatacgtt ctggttggca
     3361 agccctgctg atcagagaaa gtctctgcat gttctagtgt tagtaactaa tttttatata
     3421 gctaatgtag gataaagtag agtgcattaa gacacaatat tgtaatccct actctaggca
     3481 cttgccttta aactatgttt ttcagccctt cagaagggtt ctactactgt cctatacaat
     3541 caagtaactg aaattcttgg gaagacactt tgctcctcat ctttcccccc cgaaacaatg
     3601 ttgttttgtt ttgttttttt tccttaattt gcacgaaaac aaaaattcca tatcaatgtg
     3661 ccttgccctg gatagcgatt atttgtggaa ttgttgcaca tgctcctcta ttgaaagggg
     3721 tttttcccta gtcaagcatt tggagacact ttttgtaaat gtgactttta tgtcagccat
     3781 tgtcagtttc aacatctaga actaaataga gagttagttg ttccgcagat aggagtagtc
     3841 tttattgtcc tctgtggtca gtggcagtgc tattctgaga tctgtagatg cttagaatat
     3901 cagtattttg gatgttgctg cattttacaa tttatttgga gtcttccttt attcccctcc
     3961 ccgcccccag atatatgaaa atatgcaata cctgcttata tcgtgtagaa aagcttagct
     4021 atgattaatt tttcttttat tttttttatt tgaccaaagt cggtgctgca cttgacgcag
     4081 tgtgttttag gtgtctgtct ttgtacttta tttgtgattt ttgaatgcac gtgcgcagga
     4141 agggctcctc ttagagaagc agtcaaactg tgaagcacta agctgaccct gcttcaagca
     4201 attttgtttt tacaactgtt cctttcacaa gcaagcctta aaaaaaaaaa aaaagacaac
     4261 ttcccttttc ttcagctccc acaccccatt tttcttagca gactgcagtc aatccacatt
     4321 caatacaaag tatataatgc ccatttttat atgcacgttt ttaaacttcc aagttctgaa
     4381 aattgtttac tggttatctc tatttaagga aaaaaaaata aaataaaaca ttttggattt
     4441 tcatatgtgt ctgataagtg gttgaatagt cgtttggcgc tgttgtatgg tgtgattgtc
     4501 agtatatggt gtcacttcct ctagccagcc agcatacttt gccttcccct atagcactta
     4561 gctgggcatt actttattat gacatatgtg cactaaaaaa agaaaaaaga aaaaaaaaaa
     4621 aaaagaaaaa aatagcagct ttcagtgctt cacagtgaag ggaaaaaagc ctagacaaac
     4681 attttgtcag aaccttgcga taagccaagg tattaccagt aaattggttg tatatacaat
     4741 aaaattgcac ccttttttta aaacaaaaca aactaagcaa tagtttgggc agttttagtt
     4801 gtttttagtg agcatgttgt agtcatgact gcaaagagag agattaactg cccactcaga
     4861 agatatgtaa tttgtattgt tgtatagttt tattgattac actgatttat tctaccctat
     4921 tttataatgc aggacttttg taatgttgtt taaatgagga aaaatttctg tcaaattagc
     4981 ctagtgaaat ttctgattgt tcattataaa ggcagcgttc atagaatggc ttttctttct
     5041 ttcctgcccc ccctcccttt gggaactgga tttaagttta aaactttcct gtttcctttt
     5101 ttttttttgt aagtatttaa atacagttat tttttctctc tctcaatggt atagcatatt
     5161 cctatgcttg agaagtatag gtctactgaa aaaccattgt aaatggacgt tacaggtatg
     5221 ctgtattttt gaaggtattt tgttgtatta agtttgatga agctaaaatt agggaactct
     5281 gaacagattt gcaggaaaaa aaatgtttta aaggctttaa aacattaggg aggcagtcta
     5341 gggtgataac gaacaggggt taagtattaa acacactaag ttatattttt gttcatgttt
     5401 cattgtccag aaagcagcag gaaactgtag ttcagttgtg atcaagcagg aaaaaagaaa
     5461 caccaacaat atgagtgttt aaccttttta gactcaaagt caagcgaaga tttttgagga
     5521 agactttgct acctggggtg tgtagactga cagactgagg gccatccgtg tttggaggcc
     5581 cagcccttga ttctgagatc catttgaatt ttttctctcc cgtcaaatgg cattaacact
     5641 attggcaaag ataagtccct caaataactc tccattttct tctttgggaa ctgaagtcag
     5701 aggcacaaac attaaatcat atcatttttc tgtatacttt tttttttttt ctggcccgtc
     5761 cccttgccac taaaacgctc cttgtctgat tattcgtggg cagaggacct ctttccaatg
     5821 ccactctatc catcccacag tctttttctt tcctttgagg tttgaactaa cttttctgtt
     5881 tcttcatacc ctggcatgac agctcctccc tgccccacag tcaggcgtgg gctacgggca
     5941 agccaaggca cacttcccaa agcttatatt cttcatactc tgaccggtga agtgtaaagg
     6001 aacccagact tcccggagtc accgtattca ggcagccatc agaagatgca aaacccatct
     6061 caaaaagttt gtctttcact tttcgaaccc ttatcctcat aggctttgaa ctctgtagtt
     6121 acagtgtcat aaagtattta tgaaatctgg attaagaaaa aaattttttt ccttgtgatt
     6181 gttttttttg gggggaggga gtttctaaga atgtcattta atgtacttgg catcatatct
     6241 gtttgtccct agtggtggtg gtctctctct ctctctctct cattctcttt ctctctttct
     6301 ttctttcttt ctttttttcc tggtagcagg cctccataga acaaatttaa aacacaagtg
     6361 gcatggtaat gtacggagag cttcagtggc acctcaccac ccacgctccg agatctgtcc
     6421 taagacataa gacagtctca gaaagctgca ctgccccaca gcacagcttt catttaaatc
     6481 agcttccaag gccaatctcg tcctgaagtc aatgcatgta tttactgttt gacagtaaac
     6541 ccgctctgcc ttctccacgt ccaaggctgt gcattcgtct aattagtgtc gtgtatgttt
     6601 tccttttatt ttttccaata aaaaagcagt gggatgaaaa ttgctttgat atatagcagg
     6661 taacattgaa gctattccat agcacttaac tgtagtgaat actgtgtcac caattctgaa
     6721 atcaatttaa tgtttaatgc aaatccatta catggtgcta ttacaggctg acaaaatgat
     6781 ttacacaaat gtgacaactt gggctcaatt cactctgctt tccaacagtg taaatgcata
     6841 gcagtgttta tctgcatgag aactatgcac taatctatct gaagaaaaac tatatcaact
     6901 ttggtatcta ctttccgttt acttcaatcc ttgccttttt ggtcattgtt ataatgccag
     6961 ctttaggaca gaaagaatta taagaaaacc agcataatac ctgatatatt aaaatgtagt
     7021 gcctgtgaaa tctgtattat attgctcttc tgaagtaaga tttttctaca ccggtagcct
     7081 tcgctgtctg tcagtcagga ccttctggta taggtgatgt aaaataaccg tacaatatta
     7141 atgcatgcta ttccataatg cttagtgaac tgtatgaata tccctcaaag ttatgttagt
     7201 ctttttttct gacttggttc ttgtcagcta ggtttaaagg tatttcactg agaatgcaaa
     7261 ttctgtcttt tcttgatttc ggctgttttc agtattttgg aggtatacat ttacttaatt
     7321 cagtattact tgtgtttttg ttttcgtttt tgttttttgt tttctttttc ctaggggaca
     7381 agcatgggtg tttgatttca aaaatcagtc cctggcaaga cttttgtctc aaaacgacca
     7441 tttgaatttc aagaactctg ctctgaagac accgaggaca tttccaaatg agggacattt
     7501 tccttcaccc tcgactgaag ctttgctgat cctgaagcgt tttcttaatg gacagtgttc
     7561 agccaggtac ccatgcttga tccgtcttca caccagactt cctcatataa aagaaaaaaa
     7621 aagaaaaaaa aaatctttat gagatcacgt ggctatttag tttcacgcac agttgcaata
     7681 ttttcttcaa aaataaaact gtacaaactt tgggcccgat tcataagaaa aagaaattgg
     7741 ctattaacac gggattttta aaatacaact tttttttttt tttggtctaa atttgaaatg
     7801 acttgcttcc caaatgaaat gtttcatctc tttttttttt tttttttcct aagccagcac
     7861 tgatctgcct tttatgcccc aaagggttac ataatcaaat taggcggccg gggaagtggg
     7921 gagcagatac cagaaatgcc cagaaagata agggggacca cctgcccttg agcatggtaa
     7981 cgggggaggc agcagcatgt aggggtcagg accttgcctg tgtgccatgc atcatgaatt
     8041 tccacttgtg gactcctgaa tctatttaat taaaataaca caatctccga agtatgtctg
     8101 gaccacaagc atatgtggtg gaagtgccac ctctaatcca accagagcac cttgagggtg
     8161 gaaaatactc cccagcgtgt gcgatgtgaa cttgtgtctc tccacggcgg tttcaaggac
     8221 aaatggtgtc cgatgaatgg ggctgttttt cctgctgttt ttacgctcag cttcttaaaa
     8281 taacacgagc tttcttccct ttttgattct atttgtgtta ctcttattat ttttaatttt
     8341 ttttagtaat agtctataat ttagcacttt ttttttctca aacatctcaa ccgaaggcca
     8401 caaggccact ggctacgttg ggatggaggc ttgagagagc tgccctttct ccctggtctc
     8461 cgactgcctt tctgcactgc aaaggcattt ggtagcatca ccactgaggt actagctaga
     8521 ctcagagctg gagctttatc agattctagg aggtccataa ggaagacttt caaaggcaaa
     8581 tacacgaccc cctcccctac tgccctgacc ttttaccaga acatagttca ccgggggctt
     8641 ttcccaccac ccttagtaat ctgtccgctc aagatacctc ggtttttttt tcatttcaaa
     8701 ttgtgcgggg aggggattaa acacttccag tgatgagaga gctgttgtga cactaaacac
     8761 ccccgtgtta ataagttggc ttgacatttg ttttttatga gccgggcccc ttgtgcctct
     8821 agtatacttg tattgactct catagatacc cttttagttt gactgtgttc tgtgaaaatt
     8881 tgtaattggt tgagaatcac tgtgggcgtc cattcttatt caactaaatc tccacaggtt
     8941 ttttgagctg gtgtggatta gtttaactct tgtattcaac cattagtgct accaccttct
     9001 cacattacaa tacaattact ggaagcaagt actgcatttc ctatgcaaca aaaaaggaaa
     9061 ataaaaaatt gctaatgcta
//
LOCUS       XM_032649066             949 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear factor I A (NFIA), transcript
            variant X6, mRNA.
ACCESSION   XM_032649066
VERSION     XM_032649066.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..949
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..949
                     /gene="NFIA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116762244"
     CDS             316..879
                     /gene="NFIA"
                     /codon_start=1
                     /product="nuclear factor 1 A-type isoform X5"
                     /protein_id="XP_032504957.1"
                     /db_xref="GeneID:116762244"
                     /translation="MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKH
                     EKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPC
                     CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPG
                     LCVQPHHIGVSVKELDLYLAYFVHAAV"
     misc_feature    340..453
                     /gene="NFIA"
                     /note="Nuclear factor I protein pre-N-terminus; Region:
                     NfI_DNAbd_pre-N; pfam10524"
                     /db_xref="CDD:463134"
     misc_feature    517..831
                     /gene="NFIA"
                     /note="MH1 domain; Region: MH1; pfam03165"
                     /db_xref="CDD:460833"
ORIGIN      
        1 ggcacccggc cggcgggcgc gggagctgga aagggtgcgc tatgccttta acgcccgcgt
       61 acagtagaca tgtatagtgg agtgtaggga aactctaggc ggggttaaag ttcagctcat
      121 ggagcggcaa tagcgctggc tggctgcagt tgagccgagt tggaaatgtg aacgcaagaa
      181 gcaggcttga tttatttttc tccccccttc tctctctctc ctcctctctc cctctttctc
      241 ctttctcacc cgcactcacg cacacctcca aaccgcacac ccagacgcac acgcacaccc
      301 caccgccggg cagtgatgta ttctccgctc tgtctcaccc aggatgaatt tcatcctttc
      361 atcgaagcac ttctgcccca cgtccgagcc ttcgcctaca catggttcaa cctgcaggcc
      421 cgaaaacgaa aatacttcaa aaaacatgaa aagcgtatgt caaaagaaga agagagagcc
      481 gtgaaggatg agttgctaag tgaaaaacca gaggtcaagc agaagtgggc atctcgactt
      541 ctggccaagt tgcggaaaga tatccgacct gagtaccgag aggattttgt tcttacagtc
      601 acagggaaaa agcctccgtg ttgtgttctt tccaacccag accagaaagg caagatgcga
      661 agaattgact gcctccgcca ggcagataaa gtctggaggt tggaccttgt tatggtgatt
      721 ttatttaaag gtattccgct tgaaagtact gatggcgagc gccttgtaaa gtccccgcag
      781 tgctctaatc cagggctctg tgtccagccc catcacatag gggtttctgt taaggaactc
      841 gatttatatt tggcatactt tgtgcatgca gcagtgtgag aatatatgta atttatgaca
      901 cataataatg aagtgaagac ctatgtacct accacccgac ccaagaaag
//
LOCUS       XR_004352233             351 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116762274
            (LOC116762274), ncRNA.
ACCESSION   XR_004352233
VERSION     XR_004352233.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..351
                     /gene="LOC116762274"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116762274"
     ncRNA           1..351
                     /ncRNA_class="lncRNA"
                     /gene="LOC116762274"
                     /product="uncharacterized LOC116762274"
                     /db_xref="GeneID:116762274"
ORIGIN      
        1 ctggttgaaa aaggctgagt taaatggagt gaagattaca gcaaaaaaaa aaaaaaaaaa
       61 gaaaagtgat catggcaact ttttccctca agaatgaaag agtgaatgta accctgaagt
      121 tatgcaccat tctttcctct gtgtcaccag aaatcttaac cgtaaaccca gctattagtg
      181 cctaatcata tggtctatcg atcatgagat ggatcgcctg ctcaaagagg cagcaggtcc
      241 tgtggaatgc tgcactgcgc ccgactgaac ttcaaccttt tatacaaaac tggaggagtc
      301 aaaatcatca ttcactgcct gaagcccctg gtccctgggc ctcctgaacc c
//
LOCUS       XM_032649085            6369 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 35 member D1
            (SLC35D1), transcript variant X1, mRNA.
ACCESSION   XM_032649085
VERSION     XM_032649085.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6369
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6369
                     /gene="SLC35D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 21 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762277"
     CDS             633..1700
                     /gene="SLC35D1"
                     /codon_start=1
                     /product="UDP-glucuronic acid/UDP-N-acetylgalactosamine
                     transporter isoform X1"
                     /protein_id="XP_032504976.1"
                     /db_xref="GeneID:116762277"
                     /translation="MAEVHRRQQARVKGEAPAKSSTHRHEEELGMASAETLTVFLKLL
                     AAGFYGVSSFLIVVVNKSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDFD
                     RNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGLLLKKTFSW
                     GIKMTVFAMIIGAFVAASSDLAFDLEGYVFILINDVLTAANGAYVKQKLDSKELGKYG
                     LLYYNALFMILPTLAIAYFTGDAQKAMDFEGWADTLFLLQFTLSCVMGFILMYATVLC
                     TQYNSALTTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFSE
                     EQLSKQSEASNKLDIKGKGAV"
     misc_feature    777..1619
                     /gene="SLC35D1"
                     /note="Nucleotide-sugar transporter [Carbohydrate
                     transport and metabolism / Posttranslational modification,
                     protein turnover, chaperones / Intracellular trafficking
                     and secretion]; Region: VRG4; COG5070"
                     /db_xref="CDD:227402"
ORIGIN      
        1 aagggcttag gccctctgca agagagacca aaatagcgtt cgagtgaggc tagacgcacg
       61 cacattgtta actactcagt cagccacctg ttaccgattg gaggagggtc tgtattttgg
      121 ttgcggcagt tatctggaaa atacggctct cagccccccg gccgccagcc tccgcatccc
      181 aggtacgcgg cccccgagac acccggcgcg ggcttgcgcg caggcgttag ccggccgctt
      241 ccttccgcga ttgtgctgtg ctgctaggga tcctggtgtc cccgagtggt tccccctaag
      301 cttcttctcc ctctctgtcc gggactcagg gtcgccactg ccccttctcc gggccctctc
      361 caagccctgc ccaggccaag ccaggcgcgg cccctaccct ctgaccccgc gttgcacaat
      421 gcccgatcaa agtcccgggg cgtgtgtacc acagcgtccc tgcccctggg cgggggtggg
      481 cggcggccgc gcggggagcc gaggcggcgg cggcagccgg cccagtacac cggccccggt
      541 cccgcgagtc accgcgagct gccgcctcag accccagctc tgctcggccc cgccgcccgc
      601 cgctcccctc gcaggccgcc gccgccgccg ccatggcgga agttcataga cgtcagcagg
      661 cccgggttaa aggagaagcc cccgcgaaat cctccacaca cagacatgag gaggagctgg
      721 ggatggcgtc ggccgaaacg ctgaccgtgt tcctgaaact gctggccgct ggcttttacg
      781 gcgtgagctc cttccttatc gtggtggtca acaagagcgt gctcaccaac tacagatttc
      841 cctcctcact gtgtgttgga cttggccaga tggtggccac agtggcagta ctctgggttg
      901 gaaaggcact cagagtagtc aagtttcctg actttgacag aaatgtacct cgaaagacgt
      961 ttccactacc tctactatat tttgggaacc aaatcacggg actgttcagc acaaagaaac
     1021 tgaacttgcc aatgtttaca gttctgagaa ggttctccat cctgtttaca atgtttgctg
     1081 aaggactttt actcaagaag actttttctt ggggtattaa gatgactgta tttgcaatga
     1141 ttattggagc ctttgtagct gccagctctg acttggcatt cgatctggaa ggatatgttt
     1201 ttattctgat aaatgatgtc ctgacagcag caaatggtgc ctacgtaaaa caaaaattag
     1261 attcaaaaga gctgggaaaa tatggtctgc tctattacaa tgcactgttc atgattctgc
     1321 ccaccctagc cattgcatat tttacgggag atgcgcaaaa ggcaatggat tttgaaggct
     1381 gggccgacac cctctttctt ctgcagttca ccctctcttg tgtgatggga tttatcttga
     1441 tgtatgccac agtactctgc actcagtata attctgctct tacaactaca atagttggct
     1501 gtattaagaa tatattaata acttatatcg gaatggtctt tggtggagat tacattttca
     1561 catggacaaa cttcattggc ttaaatatca gcattgctgg gagcctggtg tattcctaca
     1621 tcactttctc tgaagagcag ctgagcaaac agtcagaggc cagtaacaag ctggacatta
     1681 aggggaaagg agcagtatga ccggaggatt gcatcagcta cataggccca agtttttgat
     1741 cacctcggaa cactggcagt tcttatacag attctgaggt gtcttgatca tggagaaaaa
     1801 taccattcct ttgcacttgt acaatctgag gattgattgc tgccttttaa aattttatga
     1861 aagagactta taattgactc ttttaaatat gccatttgca ttaatttata tcagactgga
     1921 aaatgtactg ggctttttaa tttatttttc ttctatgcca acagtgaaac gtcaatgttt
     1981 tgaaaatatt ttattccata gtttgatatc caggtgtccc tgagagctgc gtatatgaag
     2041 tgcttcacct ggagcctcat gattcacatc gttgccgcgt ctggaggcac ttgagccttc
     2101 cttctcctgg aaatgcagcc aaggatctta aatttctctt ctttgaattt tctttcttaa
     2161 caattgcatt ttcttcataa ggatgtcatc actccttttg ccaaagatga catctttggc
     2221 gctaaagaaa tgtgtgcggc tttgaagtgt attggtttcc acgctggctt ccctaagaac
     2281 tcatgggatg aacagagtgc tttccttgaa aatatcctat tccctctttg ttgtgtagga
     2341 tgaggataat gaagggatgg aggaagtagg ccttttcttc atttattcgt ctgtctctga
     2401 ttcattcatt caactaaaat gtactgagta tgtagttatg tgccaggcat tgtgctaagt
     2461 gctgggggta aagggatgtt ttggaggtag ttgccttgat ctcactcctg ctacagtgac
     2521 caagggttag acagaggact tagctctgtt gatttattta gaagacgttg tgactatgaa
     2581 caagtcatgg gaattttttc agctctcaga aactgcagat ctgtaagcag ggttggaagc
     2641 acctgtctac cagccccacg gcgatgcaaa accacatgct acagtgtatg tcagtcacat
     2701 gtatgtgaaa agctgcaatt gtaaaccatg caactcagcc tttcttctct gagtgagagt
     2761 ggcgtgcagg gaaggggacc gtcatgtttc cccatgcttc ccacctctgg gtttggttgc
     2821 tactcttttt actcatcctt gaatcaatat gtctgcatct tatatttttg agtgtatggt
     2881 ttgaggagaa aggctggtta gatgtttctc cattgtcgat gcttggactg tctctggcag
     2941 tgtcagtgtt ggagccatca ccttcctttc cacttgcgtg gcacgagcat acctatttcc
     3001 tttggacgct cccacctata tcccacctcc cttggtcact tgatgggcat gcctgcttct
     3061 ctcaagaccg gcgctgcatc ctggagagca gctgtggatg ggcatacgcc taaattgcct
     3121 ctttgggtgg gtcaggtgtt aactcgaaca cagtagtgtg acttggctta gagacatcca
     3181 ttgactttgg agatgagtgt ttgctcaggc cagctgtgca atcattgtgt aagaggctgg
     3241 gtacctttgt gttggtgtac actctggctt ccatttcatt aggtttgcaa tctactggcc
     3301 tttgttgacc taaacagtta gtattttggg gcctcaacag gggacctgga aggttttgat
     3361 ttctttttat ttttgaaaaa gtattatatt gaggtcattt cacgttcata tcttgccctt
     3421 attttgtctt tatcgaagcc tggccggtgg tgctgggtcc ctagaattag cctcatggcc
     3481 aactcctaag ttacaagctc caggtaaggg gtcctaagcc tcactttttt ccagtattat
     3541 gtgagctgag aaaattcaag tgtgagaata ggatattatc ttgtacaaga tatcttgttg
     3601 tccctgtttt attgataaga aaacaagact cagagaaagt taggtgactt gctagtaagt
     3661 cacaattcct gttttttcta ctgaaccatg ctgccaatga taacctccct tctcctccga
     3721 gggagtgagg aaatgaggct gccagctaag ctagcttgag ctctttcagg gaggcaatct
     3781 gttgattgaa tttggagtca gagaggaata ggctttgtga atcagggaga atgatgggtc
     3841 agtctacatg cctgagcttc tgtctcactt ccaggctggc ctcggttgac atgcacttct
     3901 ggctgtgaat gttgctgcca ctgcctggtt ttgccactgg ggacagtggg aagtcgtagg
     3961 agctaatttt agcagttctg ttccttcttc tgccagccac atggaggagg gaactttgat
     4021 gttagaaata ctttgtgtgc atttagaggt gttggactaa aaccccacca ggggttgaac
     4081 tgcttcttgg agatcaggtt cccttgaaga tatgtcatct ctccaggttt atttgaggaa
     4141 atcatgaata gttataactt cactagatgc acatgacctc agggctcctg gcctgtgctg
     4201 aactttctgg atgcttagaa gcagtagagt agtttacagc ttctgctctg tccatgttga
     4261 ttgctggatg cccccttcaa ctgccaccaa catttcaaga taagagaaag aagcctggag
     4321 aagttggaga ttgaatagac tggctaacca gttttgaagt ttgttttcaa ttacgtgcag
     4381 gcttggttat ggcacacaca aagagatata cctggtattc cagcatctta taaggcaaaa
     4441 gttctttgac ctgttaacta cctcttggaa gaaagagaca gtatagagtt aaatgcttaa
     4501 atttgccctt tgagacagat gagctgtggt gagaattttg aaaacacatt agtgactagt
     4561 ggctcctctt cttgagtcag tgacagtgat gttgtctttg gccagtctgt ttttaaggca
     4621 gtgccagatt gatttgaata accctggttg gccagggtac acattgctaa catgtcaggt
     4681 gatttttaat acccttatat ggcagttggc tgtatgagtc agtcatttgt aggatccaac
     4741 ttgcatgtag gttaagaaag aaaagtatgt ttgcaagttt gttgtttgta gtcctagtgt
     4801 atcaggaatg catggtaagt tcacatcagt aacgctgatg taggatcttc gtggaaagaa
     4861 tagtagaatt tcacttttga ctggtttggg aaggaaccca ggatttgggg agggcctgcc
     4921 tttgctttca ttattatggc gtcattcagt gagcaaagat tgactgttta attccaggca
     4981 ttattctaag ctctggggcg tctgaggtga agagggcagg gttcttgttc tcaaggaatg
     5041 tataattctt tagccagacc ccgattgaga ccccgattga gatgaaagga gtccgtgatt
     5101 tatgagtaaa agctgcctgc acagttgtca gcaccgctga tcaggggtgt cccacccact
     5161 gcgctgaatg aagcactttt ttaatctaag aggagttata actcctacta gtcccccagc
     5221 tctgagatgc gtgccaggcc attagacttc tgtgactagc ctgggtccct cctccctctc
     5281 gtgcgtgcat tcttgcttcc tcagagctac agctgtgtac tactggtcct ccttgtgaat
     5341 gaggctgtaa ttgatttttc cctccctgag gggaaaaaaa gatactcaga ataaatgaga
     5401 taacagatgc aaactactca gcacaacgcc tcctacatat taggcactca gcacatgttg
     5461 ttattgtcat tatttcatgg taagactata ggcaaaggtt aagattctta atttgtgctc
     5521 cttaaaatgc tagaggcggg gcagtgtatt tcttttaaaa tgtgacccta tactttgttg
     5581 cctctagaat gcttagtttc aaagaacagt ttctgctcac ggttaaagaa tggtttctgc
     5641 tcacggccat cttttattaa atacctactg gatataattg tggatattgt gtgatgcagg
     5701 tgaatccatc tgtttaaaaa aaataaaatt actttcgtat tttggtaaat taaaaaaaaa
     5761 aaaaagaaag aaaaattatt ttctacctga gaggaagata attagacttc agaatggtga
     5821 ttccgttaaa acttccccgg tttgtcacct taaggtagct cctgtgtagg tcagacattc
     5881 cttcttccct tctccgaatt aaatgcatca acttcatgct gcctctgtgt ccaggctttt
     5941 gtcagttggt gtttgtgaac ctctggcacc attgctgttt tctaaaccta ccttctagtt
     6001 cttactgtta gggtgccact tcatcatggt atgaggaggt attctatggt gggttttttt
     6061 ttaagcttgc ttttttgaaa atacttttta aaaagaaatc tactggttag atttttttgt
     6121 ctcacaaaaa tgtttttaga gattattttg ttcataaatg tttctttctc atgctgatga
     6181 tcaactgagt ttgtctacaa atgttggcct atcacagtat tttttcaata cagattctat
     6241 ttaccaaatg accattttag tgtttttaaa aggtaccaag gattgagata tgtaaatcag
     6301 gtgacataat atgaaaatta tgtgcctaaa tatttttgta aaggtgtcaa ataaatactt
     6361 tttcttcaa
//
LOCUS       XM_032649093            6222 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 35 member D1
            (SLC35D1), transcript variant X2, mRNA.
ACCESSION   XM_032649093
VERSION     XM_032649093.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6222
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6222
                     /gene="SLC35D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762277"
     CDS             633..1553
                     /gene="SLC35D1"
                     /codon_start=1
                     /product="UDP-glucuronic acid/UDP-N-acetylgalactosamine
                     transporter isoform X2"
                     /protein_id="XP_032504984.1"
                     /db_xref="GeneID:116762277"
                     /translation="MAEVHRRQQARVKGEAPAKSSTHRHEEELGMASAETLTVFLKLL
                     AAGFYGVSSFLIVVVNKSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDFD
                     RNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGLLLKKTFSW
                     GIKMTVFAMIIGAFVAASSDLAFDLEGYVFILINDVLTAANGAYVKQKLDSKELGKYG
                     LLYYNALFMILPTLAIAYFTGDAQKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSL
                     VYSYITFSEEQLSKQSEASNKLDIKGKGAV"
     misc_feature    777..>1352
                     /gene="SLC35D1"
                     /note="Nucleotide-sugar transporter [Carbohydrate
                     transport and metabolism / Posttranslational modification,
                     protein turnover, chaperones / Intracellular trafficking
                     and secretion]; Region: VRG4; COG5070"
                     /db_xref="CDD:227402"
ORIGIN      
        1 aagggcttag gccctctgca agagagacca aaatagcgtt cgagtgaggc tagacgcacg
       61 cacattgtta actactcagt cagccacctg ttaccgattg gaggagggtc tgtattttgg
      121 ttgcggcagt tatctggaaa atacggctct cagccccccg gccgccagcc tccgcatccc
      181 aggtacgcgg cccccgagac acccggcgcg ggcttgcgcg caggcgttag ccggccgctt
      241 ccttccgcga ttgtgctgtg ctgctaggga tcctggtgtc cccgagtggt tccccctaag
      301 cttcttctcc ctctctgtcc gggactcagg gtcgccactg ccccttctcc gggccctctc
      361 caagccctgc ccaggccaag ccaggcgcgg cccctaccct ctgaccccgc gttgcacaat
      421 gcccgatcaa agtcccgggg cgtgtgtacc acagcgtccc tgcccctggg cgggggtggg
      481 cggcggccgc gcggggagcc gaggcggcgg cggcagccgg cccagtacac cggccccggt
      541 cccgcgagtc accgcgagct gccgcctcag accccagctc tgctcggccc cgccgcccgc
      601 cgctcccctc gcaggccgcc gccgccgccg ccatggcgga agttcataga cgtcagcagg
      661 cccgggttaa aggagaagcc cccgcgaaat cctccacaca cagacatgag gaggagctgg
      721 ggatggcgtc ggccgaaacg ctgaccgtgt tcctgaaact gctggccgct ggcttttacg
      781 gcgtgagctc cttccttatc gtggtggtca acaagagcgt gctcaccaac tacagatttc
      841 cctcctcact gtgtgttgga cttggccaga tggtggccac agtggcagta ctctgggttg
      901 gaaaggcact cagagtagtc aagtttcctg actttgacag aaatgtacct cgaaagacgt
      961 ttccactacc tctactatat tttgggaacc aaatcacggg actgttcagc acaaagaaac
     1021 tgaacttgcc aatgtttaca gttctgagaa ggttctccat cctgtttaca atgtttgctg
     1081 aaggactttt actcaagaag actttttctt ggggtattaa gatgactgta tttgcaatga
     1141 ttattggagc ctttgtagct gccagctctg acttggcatt cgatctggaa ggatatgttt
     1201 ttattctgat aaatgatgtc ctgacagcag caaatggtgc ctacgtaaaa caaaaattag
     1261 attcaaaaga gctgggaaaa tatggtctgc tctattacaa tgcactgttc atgattctgc
     1321 ccaccctagc cattgcatat tttacgggag atgcgcaaaa gaatatatta ataacttata
     1381 tcggaatggt ctttggtgga gattacattt tcacatggac aaacttcatt ggcttaaata
     1441 tcagcattgc tgggagcctg gtgtattcct acatcacttt ctctgaagag cagctgagca
     1501 aacagtcaga ggccagtaac aagctggaca ttaaggggaa aggagcagta tgaccggagg
     1561 attgcatcag ctacataggc ccaagttttt gatcacctcg gaacactggc agttcttata
     1621 cagattctga ggtgtcttga tcatggagaa aaataccatt cctttgcact tgtacaatct
     1681 gaggattgat tgctgccttt taaaatttta tgaaagagac ttataattga ctcttttaaa
     1741 tatgccattt gcattaattt atatcagact ggaaaatgta ctgggctttt taatttattt
     1801 ttcttctatg ccaacagtga aacgtcaatg ttttgaaaat attttattcc atagtttgat
     1861 atccaggtgt ccctgagagc tgcgtatatg aagtgcttca cctggagcct catgattcac
     1921 atcgttgccg cgtctggagg cacttgagcc ttccttctcc tggaaatgca gccaaggatc
     1981 ttaaatttct cttctttgaa ttttctttct taacaattgc attttcttca taaggatgtc
     2041 atcactcctt ttgccaaaga tgacatcttt ggcgctaaag aaatgtgtgc ggctttgaag
     2101 tgtattggtt tccacgctgg cttccctaag aactcatggg atgaacagag tgctttcctt
     2161 gaaaatatcc tattccctct ttgttgtgta ggatgaggat aatgaaggga tggaggaagt
     2221 aggccttttc ttcatttatt cgtctgtctc tgattcattc attcaactaa aatgtactga
     2281 gtatgtagtt atgtgccagg cattgtgcta agtgctgggg gtaaagggat gttttggagg
     2341 tagttgcctt gatctcactc ctgctacagt gaccaagggt tagacagagg acttagctct
     2401 gttgatttat ttagaagacg ttgtgactat gaacaagtca tgggaatttt ttcagctctc
     2461 agaaactgca gatctgtaag cagggttgga agcacctgtc taccagcccc acggcgatgc
     2521 aaaaccacat gctacagtgt atgtcagtca catgtatgtg aaaagctgca attgtaaacc
     2581 atgcaactca gcctttcttc tctgagtgag agtggcgtgc agggaagggg accgtcatgt
     2641 ttccccatgc ttcccacctc tgggtttggt tgctactctt tttactcatc cttgaatcaa
     2701 tatgtctgca tcttatattt ttgagtgtat ggtttgagga gaaaggctgg ttagatgttt
     2761 ctccattgtc gatgcttgga ctgtctctgg cagtgtcagt gttggagcca tcaccttcct
     2821 ttccacttgc gtggcacgag catacctatt tcctttggac gctcccacct atatcccacc
     2881 tcccttggtc acttgatggg catgcctgct tctctcaaga ccggcgctgc atcctggaga
     2941 gcagctgtgg atgggcatac gcctaaattg cctctttggg tgggtcaggt gttaactcga
     3001 acacagtagt gtgacttggc ttagagacat ccattgactt tggagatgag tgtttgctca
     3061 ggccagctgt gcaatcattg tgtaagaggc tgggtacctt tgtgttggtg tacactctgg
     3121 cttccatttc attaggtttg caatctactg gcctttgttg acctaaacag ttagtatttt
     3181 ggggcctcaa caggggacct ggaaggtttt gatttctttt tatttttgaa aaagtattat
     3241 attgaggtca tttcacgttc atatcttgcc cttattttgt ctttatcgaa gcctggccgg
     3301 tggtgctggg tccctagaat tagcctcatg gccaactcct aagttacaag ctccaggtaa
     3361 ggggtcctaa gcctcacttt tttccagtat tatgtgagct gagaaaattc aagtgtgaga
     3421 ataggatatt atcttgtaca agatatcttg ttgtccctgt tttattgata agaaaacaag
     3481 actcagagaa agttaggtga cttgctagta agtcacaatt cctgtttttt ctactgaacc
     3541 atgctgccaa tgataacctc ccttctcctc cgagggagtg aggaaatgag gctgccagct
     3601 aagctagctt gagctctttc agggaggcaa tctgttgatt gaatttggag tcagagagga
     3661 ataggctttg tgaatcaggg agaatgatgg gtcagtctac atgcctgagc ttctgtctca
     3721 cttccaggct ggcctcggtt gacatgcact tctggctgtg aatgttgctg ccactgcctg
     3781 gttttgccac tggggacagt gggaagtcgt aggagctaat tttagcagtt ctgttccttc
     3841 ttctgccagc cacatggagg agggaacttt gatgttagaa atactttgtg tgcatttaga
     3901 ggtgttggac taaaacccca ccaggggttg aactgcttct tggagatcag gttcccttga
     3961 agatatgtca tctctccagg tttatttgag gaaatcatga atagttataa cttcactaga
     4021 tgcacatgac ctcagggctc ctggcctgtg ctgaactttc tggatgctta gaagcagtag
     4081 agtagtttac agcttctgct ctgtccatgt tgattgctgg atgccccctt caactgccac
     4141 caacatttca agataagaga aagaagcctg gagaagttgg agattgaata gactggctaa
     4201 ccagttttga agtttgtttt caattacgtg caggcttggt tatggcacac acaaagagat
     4261 atacctggta ttccagcatc ttataaggca aaagttcttt gacctgttaa ctacctcttg
     4321 gaagaaagag acagtataga gttaaatgct taaatttgcc ctttgagaca gatgagctgt
     4381 ggtgagaatt ttgaaaacac attagtgact agtggctcct cttcttgagt cagtgacagt
     4441 gatgttgtct ttggccagtc tgtttttaag gcagtgccag attgatttga ataaccctgg
     4501 ttggccaggg tacacattgc taacatgtca ggtgattttt aataccctta tatggcagtt
     4561 ggctgtatga gtcagtcatt tgtaggatcc aacttgcatg taggttaaga aagaaaagta
     4621 tgtttgcaag tttgttgttt gtagtcctag tgtatcagga atgcatggta agttcacatc
     4681 agtaacgctg atgtaggatc ttcgtggaaa gaatagtaga atttcacttt tgactggttt
     4741 gggaaggaac ccaggatttg gggagggcct gcctttgctt tcattattat ggcgtcattc
     4801 agtgagcaaa gattgactgt ttaattccag gcattattct aagctctggg gcgtctgagg
     4861 tgaagagggc agggttcttg ttctcaagga atgtataatt ctttagccag accccgattg
     4921 agaccccgat tgagatgaaa ggagtccgtg atttatgagt aaaagctgcc tgcacagttg
     4981 tcagcaccgc tgatcagggg tgtcccaccc actgcgctga atgaagcact tttttaatct
     5041 aagaggagtt ataactccta ctagtccccc agctctgaga tgcgtgccag gccattagac
     5101 ttctgtgact agcctgggtc cctcctccct ctcgtgcgtg cattcttgct tcctcagagc
     5161 tacagctgtg tactactggt cctccttgtg aatgaggctg taattgattt ttccctccct
     5221 gaggggaaaa aaagatactc agaataaatg agataacaga tgcaaactac tcagcacaac
     5281 gcctcctaca tattaggcac tcagcacatg ttgttattgt cattatttca tggtaagact
     5341 ataggcaaag gttaagattc ttaatttgtg ctccttaaaa tgctagaggc ggggcagtgt
     5401 atttctttta aaatgtgacc ctatactttg ttgcctctag aatgcttagt ttcaaagaac
     5461 agtttctgct cacggttaaa gaatggtttc tgctcacggc catcttttat taaataccta
     5521 ctggatataa ttgtggatat tgtgtgatgc aggtgaatcc atctgtttaa aaaaaataaa
     5581 attactttcg tattttggta aattaaaaaa aaaaaaaaga aagaaaaatt attttctacc
     5641 tgagaggaag ataattagac ttcagaatgg tgattccgtt aaaacttccc cggtttgtca
     5701 ccttaaggta gctcctgtgt aggtcagaca ttccttcttc ccttctccga attaaatgca
     5761 tcaacttcat gctgcctctg tgtccaggct tttgtcagtt ggtgtttgtg aacctctggc
     5821 accattgctg ttttctaaac ctaccttcta gttcttactg ttagggtgcc acttcatcat
     5881 ggtatgagga ggtattctat ggtgggtttt tttttaagct tgcttttttg aaaatacttt
     5941 ttaaaaagaa atctactggt tagatttttt tgtctcacaa aaatgttttt agagattatt
     6001 ttgttcataa atgtttcttt ctcatgctga tgatcaactg agtttgtcta caaatgttgg
     6061 cctatcacag tattttttca atacagattc tatttaccaa atgaccattt tagtgttttt
     6121 aaaaggtacc aaggattgag atatgtaaat caggtgacat aatatgaaaa ttatgtgcct
     6181 aaatattttt gtaaaggtgt caaataaata ctttttcttc aa
//
LOCUS       XM_032649103            3978 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus maestro heat like repeat family member 7
            (MROH7), transcript variant X1, mRNA.
ACCESSION   XM_032649103
VERSION     XM_032649103.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3978
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3978
                     /gene="MROH7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 3% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762292"
     CDS             1..3978
                     /gene="MROH7"
                     /codon_start=1
                     /product="maestro heat-like repeat-containing protein
                     family member 7 isoform X1"
                     /protein_id="XP_032504994.1"
                     /db_xref="GeneID:116762292"
                     /translation="MAMNPGASLVLREDTKMIPTLNSTEAPGLGSDTISGPNLDTDLV
                     PVLNPPLGPGLVLVPDLNPTLSPVSEEAPGLASDNTPRPDDSRAAAPASLQITTAHSG
                     EALGLDSNHISTADSQRALSPASNLVLSPGSTEAQGLSLGNHSGPDSEEAFSSLPSKS
                     FVLGQSNSNPSRPESNPFKRSYSKETLVLGQSTSRPGSKTLLIPAPNSSLDPDSNKLL
                     SVGSGNISKLDLNAAPSSPGSLMPDMNETITLVSHNISGSVSKRTFGAAWNTSSKGTI
                     NMASNDNPKSDLNMTITRASCLTRFPGPSGAISLHSSTRGPNSTPSPPSCMTPILDSN
                     ETLSLVSSLISSDTSSLTLSSQQDCSEDKGIHTAPIEGNPGSWSKMTSVEVGQFPLGF
                     PTSDAMNKDSTAFQSIPQGAFDEVASCLVKVPGQREDGNKVALVENALSLQKSQDVLD
                     VEEEKKMTVCEQLEKQIQEEPLDSLLSSVRQQVMETLTQLSHSQLVLGVQERSELVNT
                     CMKSVFSLPSVQAMQERDEDRAEAIQTLYRQTLDALQTLLNALFVEDPTPAGLKSILE
                     PLGPWMNSGKAHERARAVKSNVSVLNHTLLTLPFFMSSGFPALGLLLGRLIIRVGDPD
                     EEIGREALDGITILYTILELQKRARDKEETDKKELYENNKHFLGPYNPVSPCQNILHV
                     ITEFGDFLGPQQVKDLLLAALEGLKCGSEAWGKDSGEMMQLASEVTLSSVLERYRHRA
                     LEVIPEIMQGIYVHLSHIQKPRAREVALLPVPLLASSFMTEVVVALLMCPLPLDSNGA
                     EMWRQLILRKPSCDIRDLLDLLLTSLKEKPVTKKGRASIVPLAAASGLCELLSVNSCM
                     GHVRRIYPQLLLALLIQVHYHIGLNLPGHVVSCKDAKKDGQPSGFMPVCWVVKVVKIL
                     LLKMGCSYEATFLEDQGGWELMGQAENHHRGVSLLARAMVQYSCQELCRILYLLIPLL
                     ERGDEKHKITATAFFVELLQMEEVRRIPEEYSLGRMAEGLSHQDPIMKVLSIRGLVIL
                     ARRTEKTTKVQALLPSMVKGLKSVDGLLVVEAVHNIKIIFKGQDRKLMDSSVYVEMLQ
                     ILLPHFSDSREDVRSSCINLYGKVVQKLRSPRTPAMEEQMISTLVPLLLTMQESNARV
                     SQKCVKTLFHCSCFMAWELPKRAYSRKPWDNQQQMVAKICKYLVDTHRDSAFTFLSQS
                     LEYTKSSRASLRKSSVMFIGSLVPCMESIMTEDHLNEVKAALENLRHDPEASVCIYAA
                     QAQDSILASCWRDSWPLLHGDSRACDLATMHRWSPSCENLPTSHQRRSWITQALGSLK
                     MSLKQ"
ORIGIN      
        1 atggccatga atccaggggc tagtctggtc ctccgtgaag acacaaagat gatacccact
       61 ctcaactcca ctgaggcccc tggtttaggc tctgacacca tctctgggcc caacctagat
      121 acagaccttg ttcctgtctt gaatccaccc ctgggtcctg gcttggttct tgttccagac
      181 cttaatccaa ctctgagtcc tgtctcagag gaggcccctg gcctggcatc tgataacacc
      241 cccagacctg atgacagcag ggccgcagct ccagcctccc tccagatcac cactgcccac
      301 tctggtgaag ctttgggttt ggattccaat cacatctcga cagctgactc acagagggcc
      361 ctaagtccag cctcaaacct cgttctgagc cctggctcta cggaagccca gggtctgagt
      421 ttggggaacc actctgggcc agattctgag gaggccttca gctccctccc aagcaagagt
      481 tttgttttgg gtcagagtaa ctccaatcct tccaggcctg aatcaaaccc atttaaaagg
      541 tcttattcaa aagaaaccct tgttctgggc caaagcacct ccaggccagg ctcaaaaact
      601 ctccttattc cagccccaaa ctcttctctg gatcctgatt ccaataagct gctcagtgtg
      661 ggctcaggaa acatctccaa gctggacctg aatgcagctc caagttctcc tgggtcccta
      721 atgccagaca tgaacgagac catcactttg gtttcacata acatctctgg atctgtttca
      781 aaaagaacct ttggtgcagc ctggaacacg agttccaagg gaaccatcaa catggcttca
      841 aatgacaatc ccaagtctga tttgaacatg accatcactc gggcctcatg cttgacccgg
      901 tttcctggtc ccagcggggc tatcagcctg cactccagca cccggggacc caactccacc
      961 ccttctccac cctcatgcat gaccccgatc ctggactcca atgagactct gagcctggtc
     1021 tccagcctca tctccagtga cacctccagc ctgacactga gcagccagca ggactgttcc
     1081 gaggacaagg gcatccacac agcgcccata gaggggaatc cggggagctg gagcaagatg
     1141 actagtgtcg aggtgggcca gttcccactg gggttcccca ccagtgacgc catgaacaag
     1201 gactccacag ccttccagag catccctcag ggagccttcg atgaagtagc ctcatgtctg
     1261 gtgaaggtgc cagggcagag agaggatggc aacaaagtgg ctctggtcga gaatgccctc
     1321 agcctccaga agagccagga tgtgctggac gtggaagaag agaagaagat gacggtgtgt
     1381 gagcaacttg agaagcagat ccaggaggag ccgctggatt ctctcttgag ctctgtccgc
     1441 cagcaagtca tggagaccct gacccagctg agtcattccc agcttgtcct gggcgtgcag
     1501 gaacggtcgg agctggtgaa cacgtgcatg aagagtgtgt tctccctgcc ctccgtgcag
     1561 gccatgcagg agagagacga agacagggct gaggccatac agacacttta ccgtcagacc
     1621 ttggatgccc tgcagacact tctcaatgcc ctctttgttg aggaccccac tcctgctggg
     1681 ctgaagagca tcttggagcc tctggggccc tggatgaact ctgggaaggc ccatgagaga
     1741 gcacgggctg tgaaaagcaa tgtctctgtg ttgaaccaca cgcttctgac cctgcctttc
     1801 tttatgtcct cggggttccc ggcactgggg cttctgctgg ggaggctcat cattcgcgtt
     1861 ggggatcctg atgaggagat tggccgggag gctctggacg gcatcaccat cctctacacc
     1921 atcttggagc ttcaaaaacg agccagagat aaggaagaga ccgataagaa ggagctgtat
     1981 gagaacaaca agcatttcct gggcccctac aaccctgtca gcccgtgcca gaacattctg
     2041 catgttatca cggaatttgg agacttcctg gggccccaac aggtaaagga cctgctgcta
     2101 gcggccctgg aagggctgaa atgtggctca gaggcttggg gcaaggactc gggggaaatg
     2161 atgcagctgg cctcggaggt cacactcagc tcggtgctgg agcggtaccg acacagggca
     2221 ctggaggtga ttccagaaat catgcagggt atctatgtgc acctgagcca cattcagaag
     2281 ccacgggccc gagaggtggc cctgctgccc gtccctctcc tggccagctc cttcatgacc
     2341 gaggtcgtcg tggccctgct catgtgtccc ctcccactgg acagcaatgg agcagagatg
     2401 tggaggcagc tgatactccg caagcccagc tgtgacatcc gagatctcct ggatctgctc
     2461 ctgaccagcc tgaaggaaaa gcctgttacc aagaagggcc gggcctccat cgtgccccta
     2521 gcggcagcca gcggcctctg tgagctcctg tccgtcaaca gctgcatggg ccacgtgagg
     2581 cgcatctacc cccagctgct cctggccctg ctcattcaag tccattacca catcggcctc
     2641 aacctgcctg gccacgtggt ttcctgcaag gacgccaaga aagacggaca gccctctggt
     2701 ttcatgcctg tatgctgggt ggtcaaagtg gtgaaaatcc ttctgctgaa gatgggctgc
     2761 tcatatgagg ctacctttct ggaggaccag ggcggctggg agctcatggg gcaggcggag
     2821 aaccaccacc gtggagtgtc cctgctggcc agggccatgg tgcagtactc ctgccaggag
     2881 ctgtgccgca tcctctatct gctcatcccg ctcctggagc gaggcgacga gaagcacaag
     2941 atcaccgcca ctgccttctt cgtggagctc ctccagatgg aggaggtgcg acggatccct
     3001 gaggaatact ctctggggcg gatggcagaa ggcctgagcc accaggaccc aatcatgaag
     3061 gtgctgtcca tccgaggcct ggtcatcctg gcccgaagga ctgaaaagac caccaaggtg
     3121 caggccctcc tgccctccat ggtgaagggt ctgaagagtg tggatgggct gctggtggtg
     3181 gaggcggtcc acaacatcaa gatcatattc aaggggcagg accggaagct gatggacagc
     3241 tcggtctatg tggagatgct gcagatcctg ctgccacact tcagtgactc acgagaggac
     3301 gtgcgctcct cctgcatcaa cctgtacggc aaggtggtcc agaagctgcg gtcgccccgc
     3361 accccagcca tggaggagca gatgatcagc accttggtgc ccctgctgct gaccatgcaa
     3421 gagagcaatg ccagggtgag ccagaaatgt gtgaagaccc tgttccactg ttcttgcttc
     3481 atggcttggg aattgccaaa aagagcttac agtcggaagc cctgggacaa ccagcagcag
     3541 atggtggcca aaatttgcaa gtaccttgtg gacactcatc gagacagtgc cttcacgttc
     3601 ctcagccaga gcctggagta caccaagagt tccagggcct ccctccggaa gtcctcggtc
     3661 atgttcatag ggtccctggt cccctgcatg gaaagcatca tgacggaaga tcatctgaat
     3721 gaagttaaag ccgctctgga aaacttgaga cacgacccag aagcatcagt gtgcatctac
     3781 gcggctcagg cccaggacag catcctggcc agctgctggc gggactcttg gccactgcta
     3841 catggggact ctcgggcgtg tgacctggct accatgcacc gctggagccc tagctgtgag
     3901 aacctgccca cttcccacca gcggcgctcc tggatcacgc aggcgctggg ttccttgaag
     3961 atgtccttga agcagtga
//
LOCUS       XM_032649111            3035 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus maestro heat like repeat family member 7
            (MROH7), transcript variant X2, mRNA.
ACCESSION   XM_032649111
VERSION     XM_032649111.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3035
                     /gene="MROH7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 4%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762292"
     CDS             245..2953
                     /gene="MROH7"
                     /codon_start=1
                     /product="maestro heat-like repeat-containing protein
                     family member 7 isoform X2"
                     /protein_id="XP_032505002.1"
                     /db_xref="GeneID:116762292"
                     /translation="MSGEGARAERGWQQSGSGRECPQPPEEPGCAGRGRREEDDGKQI
                     QEEPLDSLLSSVRQQVMETLTQLSHSQLVLGVQERSELVNTCMKSVFSLPSVQAMQER
                     DEDRAEAIQTLYRQTLDALQTLLNALFVEDPTPAGLKSILEPLGPWMNSGKAHERARA
                     VKSNVSVLNHTLLTLPFFMSSGFPALGLLLGRLIIRVGDPDEEIGREALDGITILYTI
                     LELQKRARDKEETDKKELYENNKHFLGPYNPVSPCQNILHVITEFGDFLGPQQVKDLL
                     LAALEGLKCGSEAWGKDSGEMMQLASEVTLSSVLERYRHRALEVIPEIMQGIYVHLSH
                     IQKPRAREVALLPVPLLASSFMTEVVVALLMCPLPLDSNGAEMWRQLILRKPSCDIRD
                     LLDLLLTSLKEKPVTKKGRASIVPLAAASGLCELLSVNSCMGHVRRIYPQLLLALLIQ
                     VHYHIGLNLPGHVVSCKDAKKDGQPSGFMPVCWVVKVVKILLLKMGCSYEATFLEDQG
                     GWELMGQAENHHRGVSLLARAMVQYSCQELCRILYLLIPLLERGDEKHKITATAFFVE
                     LLQMEEVRRIPEEYSLGRMAEGLSHQDPIMKVLSIRGLVILARRTEKTTKVQALLPSM
                     VKGLKSVDGLLVVEAVHNIKIIFKGQDRKLMDSSVYVEMLQILLPHFSDSREDVRSSC
                     INLYGKVVQKLRSPRTPAMEEQMISTLVPLLLTMQESNARVSQKCVKTLFHCSCFMAW
                     ELPKRAYSRKPWDNQQQMVAKICKYLVDTHRDSAFTFLSQSLEYTKSSRASLRKSSVM
                     FIGSLVPCMESIMTEDHLNEVKAALENLRHDPEASVCIYAAQAQDSILASCWRDSWPL
                     LHGDSRACDLATMHRWSPSCENLPTSHQRRSWITQALGSLKMSLKQ"
ORIGIN      
        1 aaagaccacg acactgcctg gagttggggg gagcctaggt aagcttcagt gtggccctgg
       61 gaaagtccca ggggtggagg cagcctccac aaggcagtta ccaccttgac accccctccc
      121 tgggtaaaag tcttcccgct ctggctgtaa ttccacagtt agaacttcat atctttgact
      181 aacggctgaa tttctgttac catgtggatg ccccaggtgg aggagccttc gatgaagtag
      241 cctcatgtct ggtgaaggtg ccagggcaga gagaggatgg caacaaagtg gctctggtcg
      301 agaatgccct cagcctccag aagagccagg atgtgctgga cgtggaagaa gagaagaaga
      361 tgacggtaag cagatccagg aggagccgct ggattctctc ttgagctctg tccgccagca
      421 agtcatggag accctgaccc agctgagtca ttcccagctt gtcctgggcg tgcaggaacg
      481 gtcggagctg gtgaacacgt gcatgaagag tgtgttctcc ctgccctccg tgcaggccat
      541 gcaggagaga gacgaagaca gggctgaggc catacagaca ctttaccgtc agaccttgga
      601 tgccctgcag acacttctca atgccctctt tgttgaggac cccactcctg ctgggctgaa
      661 gagcatcttg gagcctctgg ggccctggat gaactctggg aaggcccatg agagagcacg
      721 ggctgtgaaa agcaatgtct ctgtgttgaa ccacacgctt ctgaccctgc ctttctttat
      781 gtcctcgggg ttcccggcac tggggcttct gctggggagg ctcatcattc gcgttgggga
      841 tcctgatgag gagattggcc gggaggctct ggacggcatc accatcctct acaccatctt
      901 ggagcttcaa aaacgagcca gagataagga agagaccgat aagaaggagc tgtatgagaa
      961 caacaagcat ttcctgggcc cctacaaccc tgtcagcccg tgccagaaca ttctgcatgt
     1021 tatcacggaa tttggagact tcctggggcc ccaacaggta aaggacctgc tgctagcggc
     1081 cctggaaggg ctgaaatgtg gctcagaggc ttggggcaag gactcggggg aaatgatgca
     1141 gctggcctcg gaggtcacac tcagctcggt gctggagcgg taccgacaca gggcactgga
     1201 ggtgattcca gaaatcatgc agggtatcta tgtgcacctg agccacattc agaagccacg
     1261 ggcccgagag gtggccctgc tgcccgtccc tctcctggcc agctccttca tgaccgaggt
     1321 cgtcgtggcc ctgctcatgt gtcccctccc actggacagc aatggagcag agatgtggag
     1381 gcagctgata ctccgcaagc ccagctgtga catccgagat ctcctggatc tgctcctgac
     1441 cagcctgaag gaaaagcctg ttaccaagaa gggccgggcc tccatcgtgc ccctagcggc
     1501 agccagcggc ctctgtgagc tcctgtccgt caacagctgc atgggccacg tgaggcgcat
     1561 ctacccccag ctgctcctgg ccctgctcat tcaagtccat taccacatcg gcctcaacct
     1621 gcctggccac gtggtttcct gcaaggacgc caagaaagac ggacagccct ctggtttcat
     1681 gcctgtatgc tgggtggtca aagtggtgaa aatccttctg ctgaagatgg gctgctcata
     1741 tgaggctacc tttctggagg accagggcgg ctgggagctc atggggcagg cggagaacca
     1801 ccaccgtgga gtgtccctgc tggccagggc catggtgcag tactcctgcc aggagctgtg
     1861 ccgcatcctc tatctgctca tcccgctcct ggagcgaggc gacgagaagc acaagatcac
     1921 cgccactgcc ttcttcgtgg agctcctcca gatggaggag gtgcgacgga tccctgagga
     1981 atactctctg gggcggatgg cagaaggcct gagccaccag gacccaatca tgaaggtgct
     2041 gtccatccga ggcctggtca tcctggcccg aaggactgaa aagaccacca aggtgcaggc
     2101 cctcctgccc tccatggtga agggtctgaa gagtgtggat gggctgctgg tggtggaggc
     2161 ggtccacaac atcaagatca tattcaaggg gcaggaccgg aagctgatgg acagctcggt
     2221 ctatgtggag atgctgcaga tcctgctgcc acacttcagt gactcacgag aggacgtgcg
     2281 ctcctcctgc atcaacctgt acggcaaggt ggtccagaag ctgcggtcgc cccgcacccc
     2341 agccatggag gagcagatga tcagcacctt ggtgcccctg ctgctgacca tgcaagagag
     2401 caatgccagg gtgagccaga aatgtgtgaa gaccctgttc cactgttctt gcttcatggc
     2461 ttgggaattg ccaaaaagag cttacagtcg gaagccctgg gacaaccagc agcagatggt
     2521 ggccaaaatt tgcaagtacc ttgtggacac tcatcgagac agtgccttca cgttcctcag
     2581 ccagagcctg gagtacacca agagttccag ggcctccctc cggaagtcct cggtcatgtt
     2641 catagggtcc ctggtcccct gcatggaaag catcatgacg gaagatcatc tgaatgaagt
     2701 taaagccgct ctggaaaact tgagacacga cccagaagca tcagtgtgca tctacgcggc
     2761 tcaggcccag gacagcatcc tggccagctg ctggcgggac tcttggccac tgctacatgg
     2821 ggactctcgg gcgtgtgacc tggctaccat gcaccgctgg agccctagct gtgagaacct
     2881 gcccacttcc caccagcggc gctcctggat cacgcaggcg ctgggttcct tgaagatgtc
     2941 cttgaagcag tgatgtccct gagcccccag ccctcctcgg aggtggccat ggccccagcc
     3001 atgctcacta taaatgccac gtgttttgcc tctcc
//
LOCUS       XM_032649126            3801 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RB binding protein 5, histone lysine
            methyltransferase complex subunit (RBBP5), transcript variant X1,
            mRNA.
ACCESSION   XM_032649126
VERSION     XM_032649126.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3801
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3801
                     /gene="RBBP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762303"
     CDS             138..1754
                     /gene="RBBP5"
                     /codon_start=1
                     /product="retinoblastoma-binding protein 5 isoform X1"
                     /protein_id="XP_032505017.1"
                     /db_xref="GeneID:116762303"
                     /translation="MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCN
                     DGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQ
                     RFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFD
                     RRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTA
                     DRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHAL
                     YIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAP
                     DFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEE
                     LEDSKALLYLPIAPEVEDPEENPYGPPPDAVQTSLMDEGASSEKKRQSSTDGSQPPKK
                     KPKTTNIELQGVPNDEVHPLLGVKGDGKSKKKQAGRPKGSKGKEKDSPFKPKLYKGDR
                     GLPLEGSAKGKVQAELSQPLTAGGAISELL"
     misc_feature    222..329
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <228..1100
                     /gene="RBBP5"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    345..455
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    597..707
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    738..875
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    897..1010
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1029..1100
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gtcttctaaa ccagaaagtc tccggagctc gtgccaggct ctttgcggcg tctcccagtt
       61 agacgcaggt tttggaagcg gttgggagag gaggtgtcgt tgctggagct gagaccagaa
      121 ggccagagtc ctcagggatg aacctcgagt tactggagtc ctttgggcag aattatccag
      181 aggaagctga tggaactttg gattgtatca gcatggccct gacttgcacc tttaacaggt
      241 ggggcacact gcttgcagtt ggctgtaatg acggccgaat tgtcatctgg gatttcttga
      301 caagaggcat tgctaaaata attagtgcac acattcatcc agtctgttcc ttatgctgga
      361 gtcgagatgg tcataagctc gtgagtgctt ccactgataa catagtgtca cagtgggatg
      421 tcctttcagg cgactgcgac cagaggtttc gattcccttc acccatctta aaagtccagt
      481 atcatccgcg agatcagaac aaggttctcg tgtgtcccat gaaatctgct cctgtcatgt
      541 tgaccctttc agattccaaa catgttgttc tgcccgtaga cgatgactcc gatttgaacg
      601 tggttgcatc ttttgatagg cgaggagaat atatctatac aggaaatgca aaaggcaaga
      661 tcttggtcct aaaaacagat tctcaggatc ttgttgcttc cttcagagta acaactggaa
      721 caagcaatac cacagccatt aagtcgatag agtttgctcg gaagggcagt tgctttttaa
      781 ttaacacagc agatcgaata atcagagttt atgatggtag agaaatctta acctgtggaa
      841 gagatggaga gcctgaaccc atgcagaaat tgcaggactt ggtgaatagg accccatgga
      901 agaaatgttg tttctctggg gatggggaat acatagtcgc agggtcagcc cggcagcatg
      961 ccctgtacat ctgggagaag agtattggta acctggtgaa gattctccat gggacaagag
     1021 gagaactcct cttggatgta gcttggcatc ctgttcgacc catcatagca tccatttcta
     1081 gtggagtggt atctatctgg gcacaaaatc aagtagaaaa ttggagtgca tttgcgccag
     1141 acttcaaaga attggatgaa aatgtagaat atgaagaaag ggaatcagag tttgatattg
     1201 aagatgaaga taagagtgag cctgaacaga caggggctga tgctgcagag gatgaggaag
     1261 tggatgtcac cagtgtggac cctattgccg ccttctgtag cagtgatgaa gagctggaag
     1321 attcaaaggc tctattatat ttacccattg cccctgaggt agaagaccca gaagaaaatc
     1381 cttatggccc cccaccggat gcagtccaaa cctccttgat ggacgaaggg gctagttcag
     1441 agaagaagag gcagtcttca acagatgggt cccagccacc taagaagaaa cccaaaacaa
     1501 ccaatattga actgcaagga gtaccaaatg atgaagtcca tccactactg ggtgtgaagg
     1561 gggatggcaa atccaagaag aagcaagcag gccggcctaa aggatcaaaa ggtaaagaga
     1621 aagattctcc atttaaaccg aaactctaca aaggggacag aggtttacct ctggaaggat
     1681 cagcgaaggg taaagtgcag gcggagctca gccagccctt gacagcaggg ggagcgatct
     1741 cagaactgtt atgaaggccc ttgaagttct ttgttcttcc ctactttgcc atcgtgtggc
     1801 ctctggacac tgtggtcagt catttgagat tgactttaat ttaaaacaaa ggcctctgtc
     1861 ttccacccag gaggtggaag gagtgaattt tatgtttgaa tgaagaattg aattaaggaa
     1921 gaagaatata tgtccccttc cctttcaagc ataagtccaa ataggctctc aggaatgagg
     1981 atttgtgaag acatcaaaca ggagttttga ctcatttaaa cgtcaatgct tgttatgttg
     2041 ctggagaaga gattcctgtt ttgcttgtct gtctttactg tacccagcac catttcggcc
     2101 tgtcatttcc tatctcctac ttgccttccc tccacagtgc acgtccttga gtgacttgtt
     2161 cttatctgaa actttgctgc ctgtatccta gaaaaacttc tgttgcacat tctttcttcc
     2221 atttttaaac ttacccactc accagatacc tcctatattt ccatattgta ttacaaagat
     2281 gggcagaaaa gaaagtgctg gaaagatttc aaattttcca aaagcaaaga aagataagaa
     2341 aggccccctc tttgttcaca tactgtaaca ttttgctcca gaagttgagc tataagaggg
     2401 tcaggtttct ctttgtatcc ttttcattgc atgtttccct ccagtattgg ttcattctca
     2461 ttaatcatgg tttttgaaga gagctagttc atttgtctcc agcaaagaat catcagtagt
     2521 ttatattgct ttacctgtac tggcttccag agccagaaac aaaccgaggt gtctctcagc
     2581 agacttcttt tttactgggg gtgggggaat ctatgcaagg actaaaataa aaccgtccaa
     2641 aatcaaagca atgacaacac agttcaaata aaaaaatcta agaacctttt ttttttatca
     2701 ttgctcgtgg acatctgtcc ttcccatcag tcattgcatt tcccctcctt gtatccatac
     2761 cccttttcct tcctacatgt ttccagtcac ttcctttctg tgaaaggttg cttagctttt
     2821 taaaaaaaat tttaattttt gcttttgctg ttctttgtat aaaaagtagc aggttggatg
     2881 gatgtataca ctaggtgttt gaaattctct gaaaatccag agtgaagaaa ccaggtgtgg
     2941 aggggcctct ccagtctctc ttgagcagag ctttgagctg actggaagtg cttaatctgg
     3001 atcatcattt tcacagtatt ttcaaaggag agttaaacac tgtgcttgtt gggaaatctc
     3061 tgtcagttgg tggttgctcc gataggtagc caaacgaggt gattgccttt tggattttag
     3121 catagaaatc aaagtagaac acatcaacaa gagcctcttc cattccacct ttagaaccaa
     3181 aacgttcagt agttgaagca agagctctcc ctgagtcagt ggcaaaatgt ctatattttt
     3241 agatgccact gctttttcct cagatgctca ttttgtgaat ttcatttcct gtttcatatt
     3301 agaccagtgg ttgagattgg taggtgggtc acgagacatg tttttgtttt gcagacatta
     3361 tttccgtttt gtttctcttt gtactgtaca gtgcagtagt atgcaaactg tgtgatacaa
     3421 gaggtttctg ccttatttcc acatgcagag tagctgggtg tcctctgcct gagcattggg
     3481 atgttccagc tctgtccacc tcctaaaccg gctgctgaga aagtcaactt cagccacgtc
     3541 agagtgtctc tggcagcagc tcctaataat tatttatgct tttggaattt ttttcagctc
     3601 ctaaaacctt ctgtctattt cagtttgatt ttctcgattt gtacaatata tgcatattct
     3661 ttttcccttt tgtcacctgc ctacccccca gtgttttgtt ttctaatgtt ctgtagtttt
     3721 gtacgagatg agacttagcc ttgggtactt cttgctgaag ctttaatgct ttgtaaataa
     3781 aatctgatgt ttattaaaga a
//
LOCUS       XM_032649135            3687 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RB binding protein 5, histone lysine
            methyltransferase complex subunit (RBBP5), transcript variant X2,
            mRNA.
ACCESSION   XM_032649135
VERSION     XM_032649135.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3687
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3687
                     /gene="RBBP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762303"
     CDS             138..1640
                     /gene="RBBP5"
                     /codon_start=1
                     /product="retinoblastoma-binding protein 5 isoform X2"
                     /protein_id="XP_032505026.1"
                     /db_xref="GeneID:116762303"
                     /translation="MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCN
                     DGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQ
                     RFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFD
                     RRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTA
                     DRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHAL
                     YIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAP
                     DFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEE
                     LEDSKALLYLPIAPEVEDPEENPYGPPPDAVQTSLMDEGASSEKKRQSSTDGSQPPKK
                     KPKTTNIELQGVPNDEVHPLLGVKGDGKSKKKQAGRPKGSKAGGAISELL"
     misc_feature    222..329
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <228..1100
                     /gene="RBBP5"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    345..455
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    468..575
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    597..707
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    738..875
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    897..1010
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1029..1100
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gtcttctaaa ccagaaagtc tccggagctc gtgccaggct ctttgcggcg tctcccagtt
       61 agacgcaggt tttggaagcg gttgggagag gaggtgtcgt tgctggagct gagaccagaa
      121 ggccagagtc ctcagggatg aacctcgagt tactggagtc ctttgggcag aattatccag
      181 aggaagctga tggaactttg gattgtatca gcatggccct gacttgcacc tttaacaggt
      241 ggggcacact gcttgcagtt ggctgtaatg acggccgaat tgtcatctgg gatttcttga
      301 caagaggcat tgctaaaata attagtgcac acattcatcc agtctgttcc ttatgctgga
      361 gtcgagatgg tcataagctc gtgagtgctt ccactgataa catagtgtca cagtgggatg
      421 tcctttcagg cgactgcgac cagaggtttc gattcccttc acccatctta aaagtccagt
      481 atcatccgcg agatcagaac aaggttctcg tgtgtcccat gaaatctgct cctgtcatgt
      541 tgaccctttc agattccaaa catgttgttc tgcccgtaga cgatgactcc gatttgaacg
      601 tggttgcatc ttttgatagg cgaggagaat atatctatac aggaaatgca aaaggcaaga
      661 tcttggtcct aaaaacagat tctcaggatc ttgttgcttc cttcagagta acaactggaa
      721 caagcaatac cacagccatt aagtcgatag agtttgctcg gaagggcagt tgctttttaa
      781 ttaacacagc agatcgaata atcagagttt atgatggtag agaaatctta acctgtggaa
      841 gagatggaga gcctgaaccc atgcagaaat tgcaggactt ggtgaatagg accccatgga
      901 agaaatgttg tttctctggg gatggggaat acatagtcgc agggtcagcc cggcagcatg
      961 ccctgtacat ctgggagaag agtattggta acctggtgaa gattctccat gggacaagag
     1021 gagaactcct cttggatgta gcttggcatc ctgttcgacc catcatagca tccatttcta
     1081 gtggagtggt atctatctgg gcacaaaatc aagtagaaaa ttggagtgca tttgcgccag
     1141 acttcaaaga attggatgaa aatgtagaat atgaagaaag ggaatcagag tttgatattg
     1201 aagatgaaga taagagtgag cctgaacaga caggggctga tgctgcagag gatgaggaag
     1261 tggatgtcac cagtgtggac cctattgccg ccttctgtag cagtgatgaa gagctggaag
     1321 attcaaaggc tctattatat ttacccattg cccctgaggt agaagaccca gaagaaaatc
     1381 cttatggccc cccaccggat gcagtccaaa cctccttgat ggacgaaggg gctagttcag
     1441 agaagaagag gcagtcttca acagatgggt cccagccacc taagaagaaa cccaaaacaa
     1501 ccaatattga actgcaagga gtaccaaatg atgaagtcca tccactactg ggtgtgaagg
     1561 gggatggcaa atccaagaag aagcaagcag gccggcctaa aggatcaaaa gcagggggag
     1621 cgatctcaga actgttatga aggcccttga agttctttgt tcttccctac tttgccatcg
     1681 tgtggcctct ggacactgtg gtcagtcatt tgagattgac tttaatttaa aacaaaggcc
     1741 tctgtcttcc acccaggagg tggaaggagt gaattttatg tttgaatgaa gaattgaatt
     1801 aaggaagaag aatatatgtc cccttccctt tcaagcataa gtccaaatag gctctcagga
     1861 atgaggattt gtgaagacat caaacaggag ttttgactca tttaaacgtc aatgcttgtt
     1921 atgttgctgg agaagagatt cctgttttgc ttgtctgtct ttactgtacc cagcaccatt
     1981 tcggcctgtc atttcctatc tcctacttgc cttccctcca cagtgcacgt ccttgagtga
     2041 cttgttctta tctgaaactt tgctgcctgt atcctagaaa aacttctgtt gcacattctt
     2101 tcttccattt ttaaacttac ccactcacca gatacctcct atatttccat attgtattac
     2161 aaagatgggc agaaaagaaa gtgctggaaa gatttcaaat tttccaaaag caaagaaaga
     2221 taagaaaggc cccctctttg ttcacatact gtaacatttt gctccagaag ttgagctata
     2281 agagggtcag gtttctcttt gtatcctttt cattgcatgt ttccctccag tattggttca
     2341 ttctcattaa tcatggtttt tgaagagagc tagttcattt gtctccagca aagaatcatc
     2401 agtagtttat attgctttac ctgtactggc ttccagagcc agaaacaaac cgaggtgtct
     2461 ctcagcagac ttctttttta ctgggggtgg gggaatctat gcaaggacta aaataaaacc
     2521 gtccaaaatc aaagcaatga caacacagtt caaataaaaa aatctaagaa cctttttttt
     2581 ttatcattgc tcgtggacat ctgtccttcc catcagtcat tgcatttccc ctccttgtat
     2641 ccatacccct tttccttcct acatgtttcc agtcacttcc tttctgtgaa aggttgctta
     2701 gctttttaaa aaaaatttta atttttgctt ttgctgttct ttgtataaaa agtagcaggt
     2761 tggatggatg tatacactag gtgtttgaaa ttctctgaaa atccagagtg aagaaaccag
     2821 gtgtggaggg gcctctccag tctctcttga gcagagcttt gagctgactg gaagtgctta
     2881 atctggatca tcattttcac agtattttca aaggagagtt aaacactgtg cttgttggga
     2941 aatctctgtc agttggtggt tgctccgata ggtagccaaa cgaggtgatt gccttttgga
     3001 ttttagcata gaaatcaaag tagaacacat caacaagagc ctcttccatt ccacctttag
     3061 aaccaaaacg ttcagtagtt gaagcaagag ctctccctga gtcagtggca aaatgtctat
     3121 atttttagat gccactgctt tttcctcaga tgctcatttt gtgaatttca tttcctgttt
     3181 catattagac cagtggttga gattggtagg tgggtcacga gacatgtttt tgttttgcag
     3241 acattatttc cgttttgttt ctctttgtac tgtacagtgc agtagtatgc aaactgtgtg
     3301 atacaagagg tttctgcctt atttccacat gcagagtagc tgggtgtcct ctgcctgagc
     3361 attgggatgt tccagctctg tccacctcct aaaccggctg ctgagaaagt caacttcagc
     3421 cacgtcagag tgtctctggc agcagctcct aataattatt tatgcttttg gaattttttt
     3481 cagctcctaa aaccttctgt ctatttcagt ttgattttct cgatttgtac aatatatgca
     3541 tattcttttt cccttttgtc acctgcctac cccccagtgt tttgttttct aatgttctgt
     3601 agttttgtac gagatgagac ttagccttgg gtacttcttg ctgaagcttt aatgctttgt
     3661 aaataaaatc tgatgtttat taaagaa
//
LOCUS       XM_032649144            3696 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RB binding protein 5, histone lysine
            methyltransferase complex subunit (RBBP5), transcript variant X3,
            mRNA.
ACCESSION   XM_032649144
VERSION     XM_032649144.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3696
                     /gene="RBBP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762303"
     CDS             150..1649
                     /gene="RBBP5"
                     /codon_start=1
                     /product="retinoblastoma-binding protein 5 isoform X3"
                     /protein_id="XP_032505035.1"
                     /db_xref="GeneID:116762303"
                     /translation="MNLELLESFGQNYPEEADGTLDCISMALTCTFNSWSRDGHKLVS
                     ASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSK
                     HVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTT
                     AIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWKKC
                     CFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISS
                     GVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDE
                     EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPPDAVQTSLMDEG
                     ASSEKKRQSSTDGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSKKKQAGRPKG
                     SKGKEKDSPFKPKLYKGDRGLPLEGSAKGKVQAELSQPLTAGGAISELL"
     misc_feature    237..350
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <249..995
                     /gene="RBBP5"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    462..569
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    633..770
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    792..905
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    924..995
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ggaagccgtg gggtcttcta aaccagaaag tctccggagc tcgtgccagg ctctttgcgg
       61 cgtctcccag ttagacgcag gttttggaag cggttgggag aggaggtgtc gttgctggag
      121 ctgagaccag aaggccagag tcctcaggga tgaacctcga gttactggag tcctttgggc
      181 agaattatcc agaggaagct gatggaactt tggattgtat cagcatggcc ctgacttgca
      241 cctttaacag ctggagtcga gatggtcata agctcgtgag tgcttccact gataacatag
      301 tgtcacagtg ggatgtcctt tcaggcgact gcgaccagag gtttcgattc ccttcaccca
      361 tcttaaaagt ccagtatcat ccgcgagatc agaacaaggt tctcgtgtgt cccatgaaat
      421 ctgctcctgt catgttgacc ctttcagatt ccaaacatgt tgttctgccc gtagacgatg
      481 actccgattt gaacgtggtt gcatcttttg ataggcgagg agaatatatc tatacaggaa
      541 atgcaaaagg caagatcttg gtcctaaaaa cagattctca ggatcttgtt gcttccttca
      601 gagtaacaac tggaacaagc aataccacag ccattaagtc gatagagttt gctcggaagg
      661 gcagttgctt tttaattaac acagcagatc gaataatcag agtttatgat ggtagagaaa
      721 tcttaacctg tggaagagat ggagagcctg aacccatgca gaaattgcag gacttggtga
      781 ataggacccc atggaagaaa tgttgtttct ctggggatgg ggaatacata gtcgcagggt
      841 cagcccggca gcatgccctg tacatctggg agaagagtat tggtaacctg gtgaagattc
      901 tccatgggac aagaggagaa ctcctcttgg atgtagcttg gcatcctgtt cgacccatca
      961 tagcatccat ttctagtgga gtggtatcta tctgggcaca aaatcaagta gaaaattgga
     1021 gtgcatttgc gccagacttc aaagaattgg atgaaaatgt agaatatgaa gaaagggaat
     1081 cagagtttga tattgaagat gaagataaga gtgagcctga acagacaggg gctgatgctg
     1141 cagaggatga ggaagtggat gtcaccagtg tggaccctat tgccgccttc tgtagcagtg
     1201 atgaagagct ggaagattca aaggctctat tatatttacc cattgcccct gaggtagaag
     1261 acccagaaga aaatccttat ggccccccac cggatgcagt ccaaacctcc ttgatggacg
     1321 aaggggctag ttcagagaag aagaggcagt cttcaacaga tgggtcccag ccacctaaga
     1381 agaaacccaa aacaaccaat attgaactgc aaggagtacc aaatgatgaa gtccatccac
     1441 tactgggtgt gaagggggat ggcaaatcca agaagaagca agcaggccgg cctaaaggat
     1501 caaaaggtaa agagaaagat tctccattta aaccgaaact ctacaaaggg gacagaggtt
     1561 tacctctgga aggatcagcg aagggtaaag tgcaggcgga gctcagccag cccttgacag
     1621 cagggggagc gatctcagaa ctgttatgaa ggcccttgaa gttctttgtt cttccctact
     1681 ttgccatcgt gtggcctctg gacactgtgg tcagtcattt gagattgact ttaatttaaa
     1741 acaaaggcct ctgtcttcca cccaggaggt ggaaggagtg aattttatgt ttgaatgaag
     1801 aattgaatta aggaagaaga atatatgtcc ccttcccttt caagcataag tccaaatagg
     1861 ctctcaggaa tgaggatttg tgaagacatc aaacaggagt tttgactcat ttaaacgtca
     1921 atgcttgtta tgttgctgga gaagagattc ctgttttgct tgtctgtctt tactgtaccc
     1981 agcaccattt cggcctgtca tttcctatct cctacttgcc ttccctccac agtgcacgtc
     2041 cttgagtgac ttgttcttat ctgaaacttt gctgcctgta tcctagaaaa acttctgttg
     2101 cacattcttt cttccatttt taaacttacc cactcaccag atacctccta tatttccata
     2161 ttgtattaca aagatgggca gaaaagaaag tgctggaaag atttcaaatt ttccaaaagc
     2221 aaagaaagat aagaaaggcc ccctctttgt tcacatactg taacattttg ctccagaagt
     2281 tgagctataa gagggtcagg tttctctttg tatccttttc attgcatgtt tccctccagt
     2341 attggttcat tctcattaat catggttttt gaagagagct agttcatttg tctccagcaa
     2401 agaatcatca gtagtttata ttgctttacc tgtactggct tccagagcca gaaacaaacc
     2461 gaggtgtctc tcagcagact tcttttttac tgggggtggg ggaatctatg caaggactaa
     2521 aataaaaccg tccaaaatca aagcaatgac aacacagttc aaataaaaaa atctaagaac
     2581 cttttttttt tatcattgct cgtggacatc tgtccttccc atcagtcatt gcatttcccc
     2641 tccttgtatc catacccctt ttccttccta catgtttcca gtcacttcct ttctgtgaaa
     2701 ggttgcttag ctttttaaaa aaaattttaa tttttgcttt tgctgttctt tgtataaaaa
     2761 gtagcaggtt ggatggatgt atacactagg tgtttgaaat tctctgaaaa tccagagtga
     2821 agaaaccagg tgtggagggg cctctccagt ctctcttgag cagagctttg agctgactgg
     2881 aagtgcttaa tctggatcat cattttcaca gtattttcaa aggagagtta aacactgtgc
     2941 ttgttgggaa atctctgtca gttggtggtt gctccgatag gtagccaaac gaggtgattg
     3001 ccttttggat tttagcatag aaatcaaagt agaacacatc aacaagagcc tcttccattc
     3061 cacctttaga accaaaacgt tcagtagttg aagcaagagc tctccctgag tcagtggcaa
     3121 aatgtctata tttttagatg ccactgcttt ttcctcagat gctcattttg tgaatttcat
     3181 ttcctgtttc atattagacc agtggttgag attggtaggt gggtcacgag acatgttttt
     3241 gttttgcaga cattatttcc gttttgtttc tctttgtact gtacagtgca gtagtatgca
     3301 aactgtgtga tacaagaggt ttctgcctta tttccacatg cagagtagct gggtgtcctc
     3361 tgcctgagca ttgggatgtt ccagctctgt ccacctccta aaccggctgc tgagaaagtc
     3421 aacttcagcc acgtcagagt gtctctggca gcagctccta ataattattt atgcttttgg
     3481 aatttttttc agctcctaaa accttctgtc tatttcagtt tgattttctc gatttgtaca
     3541 atatatgcat attctttttc ccttttgtca cctgcctacc ccccagtgtt ttgttttcta
     3601 atgttctgta gttttgtacg agatgagact tagccttggg tacttcttgc tgaagcttta
     3661 atgctttgta aataaaatct gatgtttatt aaagaa
//
LOCUS       XM_032649151            3672 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RB binding protein 5, histone lysine
            methyltransferase complex subunit (RBBP5), transcript variant X4,
            mRNA.
ACCESSION   XM_032649151
VERSION     XM_032649151.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3672
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3672
                     /gene="RBBP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762303"
     CDS             138..1625
                     /gene="RBBP5"
                     /codon_start=1
                     /product="retinoblastoma-binding protein 5 isoform X4"
                     /protein_id="XP_032505042.1"
                     /db_xref="GeneID:116762303"
                     /translation="MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCN
                     DGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQ
                     RFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFD
                     RRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTA
                     DRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHAL
                     YIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAP
                     DFKELDENVEYEERESEFDIEDEDKSEPEQTEDPEENPYGPPPDAVQTSLMDEGASSE
                     KKRQSSTDGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSKKKQAGRPKGSKGK
                     EKDSPFKPKLYKGDRGLPLEGSAKGKVQAELSQPLTAGGAISELL"
     misc_feature    222..329
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <228..1100
                     /gene="RBBP5"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    345..455
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    468..575
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    597..707
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    738..875
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    897..1010
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1029..1100
                     /gene="RBBP5"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1140..>1574
                     /gene="RBBP5"
                     /note="Transcription initiation factor IIF, alpha subunit
                     (TFIIF-alpha); Region: TFIIF_alpha; pfam05793"
                     /db_xref="CDD:310411"
ORIGIN      
        1 gtcttctaaa ccagaaagtc tccggagctc gtgccaggct ctttgcggcg tctcccagtt
       61 agacgcaggt tttggaagcg gttgggagag gaggtgtcgt tgctggagct gagaccagaa
      121 ggccagagtc ctcagggatg aacctcgagt tactggagtc ctttgggcag aattatccag
      181 aggaagctga tggaactttg gattgtatca gcatggccct gacttgcacc tttaacaggt
      241 ggggcacact gcttgcagtt ggctgtaatg acggccgaat tgtcatctgg gatttcttga
      301 caagaggcat tgctaaaata attagtgcac acattcatcc agtctgttcc ttatgctgga
      361 gtcgagatgg tcataagctc gtgagtgctt ccactgataa catagtgtca cagtgggatg
      421 tcctttcagg cgactgcgac cagaggtttc gattcccttc acccatctta aaagtccagt
      481 atcatccgcg agatcagaac aaggttctcg tgtgtcccat gaaatctgct cctgtcatgt
      541 tgaccctttc agattccaaa catgttgttc tgcccgtaga cgatgactcc gatttgaacg
      601 tggttgcatc ttttgatagg cgaggagaat atatctatac aggaaatgca aaaggcaaga
      661 tcttggtcct aaaaacagat tctcaggatc ttgttgcttc cttcagagta acaactggaa
      721 caagcaatac cacagccatt aagtcgatag agtttgctcg gaagggcagt tgctttttaa
      781 ttaacacagc agatcgaata atcagagttt atgatggtag agaaatctta acctgtggaa
      841 gagatggaga gcctgaaccc atgcagaaat tgcaggactt ggtgaatagg accccatgga
      901 agaaatgttg tttctctggg gatggggaat acatagtcgc agggtcagcc cggcagcatg
      961 ccctgtacat ctgggagaag agtattggta acctggtgaa gattctccat gggacaagag
     1021 gagaactcct cttggatgta gcttggcatc ctgttcgacc catcatagca tccatttcta
     1081 gtggagtggt atctatctgg gcacaaaatc aagtagaaaa ttggagtgca tttgcgccag
     1141 acttcaaaga attggatgaa aatgtagaat atgaagaaag ggaatcagag tttgatattg
     1201 aagatgaaga taagagtgag cctgaacaga cagaagaccc agaagaaaat ccttatggcc
     1261 ccccaccgga tgcagtccaa acctccttga tggacgaagg ggctagttca gagaagaaga
     1321 ggcagtcttc aacagatggg tcccagccac ctaagaagaa acccaaaaca accaatattg
     1381 aactgcaagg agtaccaaat gatgaagtcc atccactact gggtgtgaag ggggatggca
     1441 aatccaagaa gaagcaagca ggccggccta aaggatcaaa aggtaaagag aaagattctc
     1501 catttaaacc gaaactctac aaaggggaca gaggtttacc tctggaagga tcagcgaagg
     1561 gtaaagtgca ggcggagctc agccagccct tgacagcagg gggagcgatc tcagaactgt
     1621 tatgaaggcc cttgaagttc tttgttcttc cctactttgc catcgtgtgg cctctggaca
     1681 ctgtggtcag tcatttgaga ttgactttaa tttaaaacaa aggcctctgt cttccaccca
     1741 ggaggtggaa ggagtgaatt ttatgtttga atgaagaatt gaattaagga agaagaatat
     1801 atgtcccctt ccctttcaag cataagtcca aataggctct caggaatgag gatttgtgaa
     1861 gacatcaaac aggagttttg actcatttaa acgtcaatgc ttgttatgtt gctggagaag
     1921 agattcctgt tttgcttgtc tgtctttact gtacccagca ccatttcggc ctgtcatttc
     1981 ctatctccta cttgccttcc ctccacagtg cacgtccttg agtgacttgt tcttatctga
     2041 aactttgctg cctgtatcct agaaaaactt ctgttgcaca ttctttcttc catttttaaa
     2101 cttacccact caccagatac ctcctatatt tccatattgt attacaaaga tgggcagaaa
     2161 agaaagtgct ggaaagattt caaattttcc aaaagcaaag aaagataaga aaggccccct
     2221 ctttgttcac atactgtaac attttgctcc agaagttgag ctataagagg gtcaggtttc
     2281 tctttgtatc cttttcattg catgtttccc tccagtattg gttcattctc attaatcatg
     2341 gtttttgaag agagctagtt catttgtctc cagcaaagaa tcatcagtag tttatattgc
     2401 tttacctgta ctggcttcca gagccagaaa caaaccgagg tgtctctcag cagacttctt
     2461 ttttactggg ggtgggggaa tctatgcaag gactaaaata aaaccgtcca aaatcaaagc
     2521 aatgacaaca cagttcaaat aaaaaaatct aagaaccttt tttttttatc attgctcgtg
     2581 gacatctgtc cttcccatca gtcattgcat ttcccctcct tgtatccata ccccttttcc
     2641 ttcctacatg tttccagtca cttcctttct gtgaaaggtt gcttagcttt ttaaaaaaaa
     2701 ttttaatttt tgcttttgct gttctttgta taaaaagtag caggttggat ggatgtatac
     2761 actaggtgtt tgaaattctc tgaaaatcca gagtgaagaa accaggtgtg gaggggcctc
     2821 tccagtctct cttgagcaga gctttgagct gactggaagt gcttaatctg gatcatcatt
     2881 ttcacagtat tttcaaagga gagttaaaca ctgtgcttgt tgggaaatct ctgtcagttg
     2941 gtggttgctc cgataggtag ccaaacgagg tgattgcctt ttggatttta gcatagaaat
     3001 caaagtagaa cacatcaaca agagcctctt ccattccacc tttagaacca aaacgttcag
     3061 tagttgaagc aagagctctc cctgagtcag tggcaaaatg tctatatttt tagatgccac
     3121 tgctttttcc tcagatgctc attttgtgaa tttcatttcc tgtttcatat tagaccagtg
     3181 gttgagattg gtaggtgggt cacgagacat gtttttgttt tgcagacatt atttccgttt
     3241 tgtttctctt tgtactgtac agtgcagtag tatgcaaact gtgtgataca agaggtttct
     3301 gccttatttc cacatgcaga gtagctgggt gtcctctgcc tgagcattgg gatgttccag
     3361 ctctgtccac ctcctaaacc ggctgctgag aaagtcaact tcagccacgt cagagtgtct
     3421 ctggcagcag ctcctaataa ttatttatgc ttttggaatt tttttcagct cctaaaacct
     3481 tctgtctatt tcagtttgat tttctcgatt tgtacaatat atgcatattc tttttccctt
     3541 ttgtcacctg cctacccccc agtgttttgt tttctaatgt tctgtagttt tgtacgagat
     3601 gagacttagc cttgggtact tcttgctgaa gctttaatgc tttgtaaata aaatctgatg
     3661 tttattaaag aa
//
LOCUS       XM_032649165            4055 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 18
            (ZBTB18), transcript variant X1, mRNA.
ACCESSION   XM_032649165
VERSION     XM_032649165.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4055
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4055
                     /gene="ZBTB18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762317"
     CDS             357..1964
                     /gene="ZBTB18"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 18
                     isoform X1"
                     /protein_id="XP_032505056.1"
                     /db_xref="GeneID:116762317"
                     /translation="MHQRLFGWGYEDSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVG
                     DAQFRAHRAVLASCSMYFHLFYKDQLDKRDIVHLNSDIVTAPAFALLLEFMYEGKLQF
                     KDLPIEDVLAAASYLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDG
                     SSHMAGDLPSDEDEGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHA
                     TAAGKTVASPCSSTESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQD
                     VLRSNLVQVKVEKEASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDS
                     VLRELEREDKGSDDEMMTPESERVQVEGGMESGLLPYVSNILSPAGQIFMCPLCNKVF
                     PSPHILQIHLSTHFREQDGLRSKPAADVNVPTCSLCGKTFSCMYTLKRHERTHSGEKP
                     YTCTQCGKSFQYSHNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHCELVNS
                     LSVKSEALSLPAVRDWTLEDSSQELWK"
     misc_feature    396..836
                     /gene="ZBTB18"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 18 (ZBTB18); Region:
                     BTB_POZ_ZBTB18_RP58; cd18324"
                     /db_xref="CDD:349633"
     misc_feature    <1275..>1838
                     /gene="ZBTB18"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1509..1571
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1629..1691
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1644..1646,1650..1652,1656..1658,1662..1667,
                     1674..1679,1686..1688,1728..1730,1734..1736,1746..1751,
                     1758..1763,1770..1772,1812..1814,1818..1820,1824..1826,
                     1830..1835,1842..1847)
                     /gene="ZBTB18"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1668..1736
                     /gene="ZBTB18"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1713..1775
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1797..1853
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 tgtttgctaa tttctggact aattatgcgg tttcattttt ttttttcttg attcagccaa
       61 atgtgtgttt aaattgtgct tgctaagtgc agtcaagtat caaaagtaat aaaataaaaa
      121 aggatggttg aacaagtttt ctgaatcttc cagaatgtgt ttgggacttt tctttgttca
      181 ttatttgagt tgttcccttt gaaattaaag ctattttgta ggttttgtag gacataattt
      241 gatgattaga gttaattaaa tttcttctga aagagaccta aattcttatt ctcagtaaga
      301 gactgtactg aaattaacgc ttttaaaact tgactaaaag ttcaaggaag gtggagatgc
      361 atcagagact gtttggctgg ggttatgaag acagtatgga gtttccagac catagtagac
      421 atttgctgca gtgtctgagc gagcagagac atcagggttt tctttgtgac tgcactgttc
      481 tggtgggaga tgcccagttc cgagcgcacc gagctgtact ggcttcatgc agcatgtatt
      541 tccacctctt ttacaaggac cagctggaca aaagagacat tgttcatctg aacagcgaca
      601 ttgttacagc cccagccttc gctctcctgc ttgaattcat gtatgaaggg aaactccagt
      661 tcaaagactt gcccattgaa gacgtgctag cagctgccag ttatctccac atgtatgaca
      721 ttgtcaaagt ctgcaaaaag aagctgaaag agaaagccac cacagaggca gacagcacca
      781 aaaaggaaga agacgcttca agttgttcgg acaaagtcga gagtctctct gatggcagca
      841 gccacatggc aggcgatttg cccagtgatg aagatgaagg ggaagatgaa aaattgaaca
      901 tcttgcctag caaaagggac ttggcggccg agcctgggaa catgtggatg cgattgccct
      961 cggactcagc aggcatcccc caggctggcg gagaggcaga gccacacgcc acagcagctg
     1021 gaaaaacagt agccagcccc tgcagctcaa cagagtcttt gtcccagagg tctgtcacct
     1081 ccgtgaggga ttcggcagat gttgactgtg tgctggacct gtctgtcaag tccagccttt
     1141 caggagttga aaatctgaac agctcttatt tctcttcaca ggacgtgctg agaagcaacc
     1201 tggtgcaggt gaaggtggag aaagaggctt cctgtgatga gagtgatgtt ggcactaatg
     1261 actatgacat ggaacatagc actgtgaaag agagtgtgag cactaataac agggtacagt
     1321 atgagcctgc ccatctggct ccgctgaggg aggactcggt cctgagggag ctggagcggg
     1381 aggacaaagg cagcgacgac gagatgatga cccccgagag cgagcgggtc caggtggagg
     1441 gcggcatgga gagcggtctg ctgccctacg tctccaacat cctgagcccg gcgggccaga
     1501 tcttcatgtg ccccctgtgc aacaaggtct tccccagccc gcacatcctg cagatccacc
     1561 tgagcacgca cttccgcgag caggacggcc tgcgcagcaa gccggccgcc gacgtcaacg
     1621 tgcccacctg ctctctgtgc gggaagacgt tctcctgcat gtacaccctg aagcgccacg
     1681 agaggactca ctcgggcgag aagccctaca cgtgcaccca gtgcggcaag agcttccagt
     1741 actcgcacaa cctgagccgc cacgccgtgg tgcacacgcg cgaaaagccg cacgcctgca
     1801 agtggtgcga gcgcaggttc acgcagtccg gggacctgta ccggcacatc cgcaagttcc
     1861 actgtgagtt ggtgaactcc ttgtccgtca aaagcgaggc gctgagcctg cccgctgtca
     1921 gagactggac cttagaagat agctctcaag aactctggaa ataattttat atatatatat
     1981 aaataatata tatataccta tatataaata gatctctata tagttgtggt acggtctaaa
     2041 agcagtcttg tttcctggaa ctgaaaggtt ggggtattaa cttgtttttg cactttagaa
     2101 tagcatgaga atctcactaa tttagcattc tggtaaaaga aactttagag caagtcggag
     2161 aatagagagg tgtttttctt tctttcaagg ggggtagggg aagtaagcca ataagaacct
     2221 ttgaaacaaa tcgtcctatc acaaaatgct ttcctagggc ctattttgtc agcactgcgg
     2281 tgtcttttga gctctctctt tttttcccac cttttctttt tttttaagta gaaattccct
     2341 ccggttttat tagcctcttt atatgtctca aattgcatga atcttttctg gctgttggaa
     2401 acctgaatgc ttttagaccc aaatggaaaa tttctgaaat gctggattat ctatttttaa
     2461 acaagcagtt gacttaaaac tttctgtggc aacttctggt tttctgacgg ttcccaatga
     2521 gagaaattct gaaagtacac tgggatcact gggacgctgt ctttgtgaag gtttgcttgg
     2581 gatgaaaaag gatattgcag cttcagcagt gttgaactgt gtgttgaaaa atgtgaatta
     2641 ctgttattgt atactgtaat tgattacatg ggctgggggg gtgtcaaagg acttgacagg
     2701 ttgtgttgat gctcttagtt gagtcttgaa aagtaaatat taacgctaca gaaatgcatg
     2761 agtttcaata tattttttgt ctttgtttgc attgtataac tttaacgagt gagtttaaaa
     2821 ttatttaatt tccttagaaa aatagcacca tttggaaaaa aaaaaaaacc tggtgttatg
     2881 aagaacgtta atgcactgtt tttattttat ataatttaaa ttgactttcc cactgtcttt
     2941 aagttgaaac tgttaagctg aataaaaact taagctgcaa attgataact tcgctacata
     3001 acaaggaaaa tataaatgtt tacaaaaggc ttaaagattt gcatgtgcag tgtgcatttt
     3061 ataacaaaac ttctaattgc acaaaaccca ggccagctca aagtttagat gtacacattt
     3121 acccagttga gcgtttttag agtaactact gcacaaattg acaataggtc attctctttt
     3181 tttgctcccc ttttcttttt ctccccttct tcctttccct cccttcctcc ttccctcccg
     3241 cccctccccc acccccccca aactcatgaa aagattctat ggactgaaaa agccccaggc
     3301 tgaaaggact ggactgcctt gattgacatg gggaaggggg ttagtagact atgtgtatcg
     3361 cggcagcaga ggctgcagcc caacgtgtgg ttttaatgac cagcacgcag ggcaaagcat
     3421 tttgcacagt gtttgttttc ctgtcttgca cttacaaata aggtctatgg gagtagcatg
     3481 gaaaacgttt gctgtttttc cctttttttt tttttaattg cttttgttta aaatttgatc
     3541 gccttaacta ctgtaaacat agcctatttt tgtgcttaag atactgaatg gaaaactcca
     3601 ttgtgtgttg ctggactgtt ttggaaatat ttggtcaaat gtgtgttaat ttggctgtaa
     3661 tggcatttaa agcaaacaaa caaacaaaaa aagctgtgaa aatggccttg gagcattatc
     3721 tttagttact tgaagagttt ctagtttttt ttaaatacag tttatgttaa aataattttt
     3781 attaatttag agaagacaat caatgtctgt gagaaaacgg actttctttt ggattttctt
     3841 tttgtggtca ttgtgagtga ttgctttttc cttttattag tttcacattc ttcctttgtt
     3901 ctaaaactta gactgacatc tagctttgac aatcatagta tgttttattt tcctgagggg
     3961 ggaataactt ataatgctgt ttagttttgt actattggtg tgttggtgaa tttttaaact
     4021 gtgtgctaac tgcaataaat tatatgaact gagaa
//
LOCUS       XM_032649174            4551 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 18
            (ZBTB18), transcript variant X2, mRNA.
ACCESSION   XM_032649174
VERSION     XM_032649174.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4551
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4551
                     /gene="ZBTB18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 7 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762317"
     CDS             865..2460
                     /gene="ZBTB18"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 18
                     isoform X2"
                     /protein_id="XP_032505065.1"
                     /db_xref="GeneID:116762317"
                     /translation="MCPKGYEDSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQF
                     RAHRAVLASCSMYFHLFYKDQLDKRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLP
                     IEDVLAAASYLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHM
                     AGDLPSDEDEGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAG
                     KTVASPCSSTESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRS
                     NLVQVKVEKEASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRE
                     LEREDKGSDDEMMTPESERVQVEGGMESGLLPYVSNILSPAGQIFMCPLCNKVFPSPH
                     ILQIHLSTHFREQDGLRSKPAADVNVPTCSLCGKTFSCMYTLKRHERTHSGEKPYTCT
                     QCGKSFQYSHNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHCELVNSLSVK
                     SEALSLPAVRDWTLEDSSQELWK"
     misc_feature    892..1332
                     /gene="ZBTB18"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 18 (ZBTB18); Region:
                     BTB_POZ_ZBTB18_RP58; cd18324"
                     /db_xref="CDD:349633"
     misc_feature    <1771..>2334
                     /gene="ZBTB18"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2005..2067
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2125..2187
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2140..2142,2146..2148,2152..2154,2158..2163,
                     2170..2175,2182..2184,2224..2226,2230..2232,2242..2247,
                     2254..2259,2266..2268,2308..2310,2314..2316,2320..2322,
                     2326..2331,2338..2343)
                     /gene="ZBTB18"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2164..2232
                     /gene="ZBTB18"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    2209..2271
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2293..2349
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtttattaat ttgtctcatt gaactgaagt actttccagg atttcagaaa gtgcagtttc
       61 agcttgttga tattgagagt tgaaatttgc attaactggc agggtgagaa attttactga
      121 gaaggtagtt ttagataagt agttatataa gagtgaaata ataaggtgaa ccaggttgaa
      181 gtagtagttc tgaatagtct tccagtattc tgagacatgt ataccattat ctcagcagaa
      241 aaaaaaaaaa attgaagtgc cgtaataatg ttgaaatggg actggagatg tcaaatgggt
      301 tggtttaaaa atatccctaa gctgcctttg aaactaaacg ttggagttga ataaaagtga
      361 atctggattt cctgaatagc accgtggctt gagtgtgctg tcagtatgta agccagtcca
      421 ccaacttaag acagaagtgt tgctattcca taaatacagt agaactccat atgctgagtt
      481 tttcaatttc ttctgttaga aagtttggaa aaaaagggag actttgaagt attttgttta
      541 tactaacaga agagaaaagt tctcctaaga aaaagctggt ggcaggagtg tagaggagta
      601 gcatatggca ttaaaaggag cacagctgga ggtagcattt ccatctgaac atgatgtcag
      661 agcagctgac agcctgccat ccctcagcct tttattctaa cacacagaca gggagttagt
      721 gtgtgcggat ctgtggtgga gaaggtatct cattcctctc taacatcatc tccactttgc
      781 atctgtctct tagtctgctt tttttccacc gatgtaacag acctggagcc agcaagactc
      841 agaggaaagg acttaatcag gtttatgtgt cctaaaggtt atgaagacag tatggagttt
      901 ccagaccata gtagacattt gctgcagtgt ctgagcgagc agagacatca gggttttctt
      961 tgtgactgca ctgttctggt gggagatgcc cagttccgag cgcaccgagc tgtactggct
     1021 tcatgcagca tgtatttcca cctcttttac aaggaccagc tggacaaaag agacattgtt
     1081 catctgaaca gcgacattgt tacagcccca gccttcgctc tcctgcttga attcatgtat
     1141 gaagggaaac tccagttcaa agacttgccc attgaagacg tgctagcagc tgccagttat
     1201 ctccacatgt atgacattgt caaagtctgc aaaaagaagc tgaaagagaa agccaccaca
     1261 gaggcagaca gcaccaaaaa ggaagaagac gcttcaagtt gttcggacaa agtcgagagt
     1321 ctctctgatg gcagcagcca catggcaggc gatttgccca gtgatgaaga tgaaggggaa
     1381 gatgaaaaat tgaacatctt gcctagcaaa agggacttgg cggccgagcc tgggaacatg
     1441 tggatgcgat tgccctcgga ctcagcaggc atcccccagg ctggcggaga ggcagagcca
     1501 cacgccacag cagctggaaa aacagtagcc agcccctgca gctcaacaga gtctttgtcc
     1561 cagaggtctg tcacctccgt gagggattcg gcagatgttg actgtgtgct ggacctgtct
     1621 gtcaagtcca gcctttcagg agttgaaaat ctgaacagct cttatttctc ttcacaggac
     1681 gtgctgagaa gcaacctggt gcaggtgaag gtggagaaag aggcttcctg tgatgagagt
     1741 gatgttggca ctaatgacta tgacatggaa catagcactg tgaaagagag tgtgagcact
     1801 aataacaggg tacagtatga gcctgcccat ctggctccgc tgagggagga ctcggtcctg
     1861 agggagctgg agcgggagga caaaggcagc gacgacgaga tgatgacccc cgagagcgag
     1921 cgggtccagg tggagggcgg catggagagc ggtctgctgc cctacgtctc caacatcctg
     1981 agcccggcgg gccagatctt catgtgcccc ctgtgcaaca aggtcttccc cagcccgcac
     2041 atcctgcaga tccacctgag cacgcacttc cgcgagcagg acggcctgcg cagcaagccg
     2101 gccgccgacg tcaacgtgcc cacctgctct ctgtgcggga agacgttctc ctgcatgtac
     2161 accctgaagc gccacgagag gactcactcg ggcgagaagc cctacacgtg cacccagtgc
     2221 ggcaagagct tccagtactc gcacaacctg agccgccacg ccgtggtgca cacgcgcgaa
     2281 aagccgcacg cctgcaagtg gtgcgagcgc aggttcacgc agtccgggga cctgtaccgg
     2341 cacatccgca agttccactg tgagttggtg aactccttgt ccgtcaaaag cgaggcgctg
     2401 agcctgcccg ctgtcagaga ctggacctta gaagatagct ctcaagaact ctggaaataa
     2461 ttttatatat atatataaat aatatatata tacctatata taaatagatc tctatatagt
     2521 tgtggtacgg tctaaaagca gtcttgtttc ctggaactga aaggttgggg tattaacttg
     2581 tttttgcact ttagaatagc atgagaatct cactaattta gcattctggt aaaagaaact
     2641 ttagagcaag tcggagaata gagaggtgtt tttctttctt tcaagggggg taggggaagt
     2701 aagccaataa gaacctttga aacaaatcgt cctatcacaa aatgctttcc tagggcctat
     2761 tttgtcagca ctgcggtgtc ttttgagctc tctctttttt tcccaccttt tctttttttt
     2821 taagtagaaa ttccctccgg ttttattagc ctctttatat gtctcaaatt gcatgaatct
     2881 tttctggctg ttggaaacct gaatgctttt agacccaaat ggaaaatttc tgaaatgctg
     2941 gattatctat ttttaaacaa gcagttgact taaaactttc tgtggcaact tctggttttc
     3001 tgacggttcc caatgagaga aattctgaaa gtacactggg atcactggga cgctgtcttt
     3061 gtgaaggttt gcttgggatg aaaaaggata ttgcagcttc agcagtgttg aactgtgtgt
     3121 tgaaaaatgt gaattactgt tattgtatac tgtaattgat tacatgggct gggggggtgt
     3181 caaaggactt gacaggttgt gttgatgctc ttagttgagt cttgaaaagt aaatattaac
     3241 gctacagaaa tgcatgagtt tcaatatatt ttttgtcttt gtttgcattg tataacttta
     3301 acgagtgagt ttaaaattat ttaatttcct tagaaaaata gcaccatttg gaaaaaaaaa
     3361 aaaacctggt gttatgaaga acgttaatgc actgttttta ttttatataa tttaaattga
     3421 ctttcccact gtctttaagt tgaaactgtt aagctgaata aaaacttaag ctgcaaattg
     3481 ataacttcgc tacataacaa ggaaaatata aatgtttaca aaaggcttaa agatttgcat
     3541 gtgcagtgtg cattttataa caaaacttct aattgcacaa aacccaggcc agctcaaagt
     3601 ttagatgtac acatttaccc agttgagcgt ttttagagta actactgcac aaattgacaa
     3661 taggtcattc tctttttttg ctcccctttt ctttttctcc ccttcttcct ttccctccct
     3721 tcctccttcc ctcccgcccc tcccccaccc cccccaaact catgaaaaga ttctatggac
     3781 tgaaaaagcc ccaggctgaa aggactggac tgccttgatt gacatgggga agggggttag
     3841 tagactatgt gtatcgcggc agcagaggct gcagcccaac gtgtggtttt aatgaccagc
     3901 acgcagggca aagcattttg cacagtgttt gttttcctgt cttgcactta caaataaggt
     3961 ctatgggagt agcatggaaa acgtttgctg tttttccctt tttttttttt taattgcttt
     4021 tgtttaaaat ttgatcgcct taactactgt aaacatagcc tatttttgtg cttaagatac
     4081 tgaatggaaa actccattgt gtgttgctgg actgttttgg aaatatttgg tcaaatgtgt
     4141 gttaatttgg ctgtaatggc atttaaagca aacaaacaaa caaaaaaagc tgtgaaaatg
     4201 gccttggagc attatcttta gttacttgaa gagtttctag ttttttttaa atacagttta
     4261 tgttaaaata atttttatta atttagagaa gacaatcaat gtctgtgaga aaacggactt
     4321 tcttttggat tttctttttg tggtcattgt gagtgattgc tttttccttt tattagtttc
     4381 acattcttcc tttgttctaa aacttagact gacatctagc tttgacaatc atagtatgtt
     4441 ttattttcct gaggggggaa taacttataa tgctgtttag ttttgtacta ttggtgtgtt
     4501 ggtgaatttt taaactgtgt gctaactgca ataaattata tgaactgaga a
//
LOCUS       XM_032649182            3820 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 18
            (ZBTB18), transcript variant X3, mRNA.
ACCESSION   XM_032649182
VERSION     XM_032649182.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3820
                     /gene="ZBTB18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762317"
     CDS             134..1729
                     /gene="ZBTB18"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 18
                     isoform X2"
                     /protein_id="XP_032505073.1"
                     /db_xref="GeneID:116762317"
                     /translation="MCPKGYEDSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQF
                     RAHRAVLASCSMYFHLFYKDQLDKRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLP
                     IEDVLAAASYLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHM
                     AGDLPSDEDEGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAG
                     KTVASPCSSTESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRS
                     NLVQVKVEKEASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRE
                     LEREDKGSDDEMMTPESERVQVEGGMESGLLPYVSNILSPAGQIFMCPLCNKVFPSPH
                     ILQIHLSTHFREQDGLRSKPAADVNVPTCSLCGKTFSCMYTLKRHERTHSGEKPYTCT
                     QCGKSFQYSHNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHCELVNSLSVK
                     SEALSLPAVRDWTLEDSSQELWK"
     misc_feature    161..601
                     /gene="ZBTB18"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 18 (ZBTB18); Region:
                     BTB_POZ_ZBTB18_RP58; cd18324"
                     /db_xref="CDD:349633"
     misc_feature    <1040..>1603
                     /gene="ZBTB18"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1274..1336
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1394..1456
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1409..1411,1415..1417,1421..1423,1427..1432,
                     1439..1444,1451..1453,1493..1495,1499..1501,1511..1516,
                     1523..1528,1535..1537,1577..1579,1583..1585,1589..1591,
                     1595..1600,1607..1612)
                     /gene="ZBTB18"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1433..1501
                     /gene="ZBTB18"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1478..1540
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1562..1618
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cggcggccgg gaggcggagg acgcggcggc ggtggggacg cggtgactta gggccgctcc
       61 gttctgcttt ttttccaccg atgtaacaga cctggagcca gcaagactca gaggaaagga
      121 cttaatcagg tttatgtgtc ctaaaggtta tgaagacagt atggagtttc cagaccatag
      181 tagacatttg ctgcagtgtc tgagcgagca gagacatcag ggttttcttt gtgactgcac
      241 tgttctggtg ggagatgccc agttccgagc gcaccgagct gtactggctt catgcagcat
      301 gtatttccac ctcttttaca aggaccagct ggacaaaaga gacattgttc atctgaacag
      361 cgacattgtt acagccccag ccttcgctct cctgcttgaa ttcatgtatg aagggaaact
      421 ccagttcaaa gacttgccca ttgaagacgt gctagcagct gccagttatc tccacatgta
      481 tgacattgtc aaagtctgca aaaagaagct gaaagagaaa gccaccacag aggcagacag
      541 caccaaaaag gaagaagacg cttcaagttg ttcggacaaa gtcgagagtc tctctgatgg
      601 cagcagccac atggcaggcg atttgcccag tgatgaagat gaaggggaag atgaaaaatt
      661 gaacatcttg cctagcaaaa gggacttggc ggccgagcct gggaacatgt ggatgcgatt
      721 gccctcggac tcagcaggca tcccccaggc tggcggagag gcagagccac acgccacagc
      781 agctggaaaa acagtagcca gcccctgcag ctcaacagag tctttgtccc agaggtctgt
      841 cacctccgtg agggattcgg cagatgttga ctgtgtgctg gacctgtctg tcaagtccag
      901 cctttcagga gttgaaaatc tgaacagctc ttatttctct tcacaggacg tgctgagaag
      961 caacctggtg caggtgaagg tggagaaaga ggcttcctgt gatgagagtg atgttggcac
     1021 taatgactat gacatggaac atagcactgt gaaagagagt gtgagcacta ataacagggt
     1081 acagtatgag cctgcccatc tggctccgct gagggaggac tcggtcctga gggagctgga
     1141 gcgggaggac aaaggcagcg acgacgagat gatgaccccc gagagcgagc gggtccaggt
     1201 ggagggcggc atggagagcg gtctgctgcc ctacgtctcc aacatcctga gcccggcggg
     1261 ccagatcttc atgtgccccc tgtgcaacaa ggtcttcccc agcccgcaca tcctgcagat
     1321 ccacctgagc acgcacttcc gcgagcagga cggcctgcgc agcaagccgg ccgccgacgt
     1381 caacgtgccc acctgctctc tgtgcgggaa gacgttctcc tgcatgtaca ccctgaagcg
     1441 ccacgagagg actcactcgg gcgagaagcc ctacacgtgc acccagtgcg gcaagagctt
     1501 ccagtactcg cacaacctga gccgccacgc cgtggtgcac acgcgcgaaa agccgcacgc
     1561 ctgcaagtgg tgcgagcgca ggttcacgca gtccggggac ctgtaccggc acatccgcaa
     1621 gttccactgt gagttggtga actccttgtc cgtcaaaagc gaggcgctga gcctgcccgc
     1681 tgtcagagac tggaccttag aagatagctc tcaagaactc tggaaataat tttatatata
     1741 tatataaata atatatatat acctatatat aaatagatct ctatatagtt gtggtacggt
     1801 ctaaaagcag tcttgtttcc tggaactgaa aggttggggt attaacttgt ttttgcactt
     1861 tagaatagca tgagaatctc actaatttag cattctggta aaagaaactt tagagcaagt
     1921 cggagaatag agaggtgttt ttctttcttt caaggggggt aggggaagta agccaataag
     1981 aacctttgaa acaaatcgtc ctatcacaaa atgctttcct agggcctatt ttgtcagcac
     2041 tgcggtgtct tttgagctct ctcttttttt cccacctttt cttttttttt aagtagaaat
     2101 tccctccggt tttattagcc tctttatatg tctcaaattg catgaatctt ttctggctgt
     2161 tggaaacctg aatgctttta gacccaaatg gaaaatttct gaaatgctgg attatctatt
     2221 tttaaacaag cagttgactt aaaactttct gtggcaactt ctggttttct gacggttccc
     2281 aatgagagaa attctgaaag tacactggga tcactgggac gctgtctttg tgaaggtttg
     2341 cttgggatga aaaaggatat tgcagcttca gcagtgttga actgtgtgtt gaaaaatgtg
     2401 aattactgtt attgtatact gtaattgatt acatgggctg ggggggtgtc aaaggacttg
     2461 acaggttgtg ttgatgctct tagttgagtc ttgaaaagta aatattaacg ctacagaaat
     2521 gcatgagttt caatatattt tttgtctttg tttgcattgt ataactttaa cgagtgagtt
     2581 taaaattatt taatttcctt agaaaaatag caccatttgg aaaaaaaaaa aaacctggtg
     2641 ttatgaagaa cgttaatgca ctgtttttat tttatataat ttaaattgac tttcccactg
     2701 tctttaagtt gaaactgtta agctgaataa aaacttaagc tgcaaattga taacttcgct
     2761 acataacaag gaaaatataa atgtttacaa aaggcttaaa gatttgcatg tgcagtgtgc
     2821 attttataac aaaacttcta attgcacaaa acccaggcca gctcaaagtt tagatgtaca
     2881 catttaccca gttgagcgtt tttagagtaa ctactgcaca aattgacaat aggtcattct
     2941 ctttttttgc tccccttttc tttttctccc cttcttcctt tccctccctt cctccttccc
     3001 tcccgcccct cccccacccc ccccaaactc atgaaaagat tctatggact gaaaaagccc
     3061 caggctgaaa ggactggact gccttgattg acatggggaa gggggttagt agactatgtg
     3121 tatcgcggca gcagaggctg cagcccaacg tgtggtttta atgaccagca cgcagggcaa
     3181 agcattttgc acagtgtttg ttttcctgtc ttgcacttac aaataaggtc tatgggagta
     3241 gcatggaaaa cgtttgctgt ttttcccttt tttttttttt aattgctttt gtttaaaatt
     3301 tgatcgcctt aactactgta aacatagcct atttttgtgc ttaagatact gaatggaaaa
     3361 ctccattgtg tgttgctgga ctgttttgga aatatttggt caaatgtgtg ttaatttggc
     3421 tgtaatggca tttaaagcaa acaaacaaac aaaaaaagct gtgaaaatgg ccttggagca
     3481 ttatctttag ttacttgaag agtttctagt tttttttaaa tacagtttat gttaaaataa
     3541 tttttattaa tttagagaag acaatcaatg tctgtgagaa aacggacttt cttttggatt
     3601 ttctttttgt ggtcattgtg agtgattgct ttttcctttt attagtttca cattcttcct
     3661 ttgttctaaa acttagactg acatctagct ttgacaatca tagtatgttt tattttcctg
     3721 aggggggaat aacttataat gctgtttagt tttgtactat tggtgtgttg gtgaattttt
     3781 aaactgtgtg ctaactgcaa taaattatat gaactgagaa
//
LOCUS       XM_032649186            3791 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 18
            (ZBTB18), transcript variant X4, mRNA.
ACCESSION   XM_032649186
VERSION     XM_032649186.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3791
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3791
                     /gene="ZBTB18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762317"
     CDS             132..1700
                     /gene="ZBTB18"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 18
                     isoform X3"
                     /protein_id="XP_032505077.1"
                     /db_xref="GeneID:116762317"
                     /translation="MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLAS
                     CSMYFHLFYKDQLDKRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAAS
                     YLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHMAGDLPSDED
                     EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSS
                     TESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEK
                     EASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRELEREDKGSD
                     DEMMTPESERVQVEGGMESGLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTH
                     FREQDGLRSKPAADVNVPTCSLCGKTFSCMYTLKRHERTHSGEKPYTCTQCGKSFQYS
                     HNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHCELVNSLSVKSEALSLPAV
                     RDWTLEDSSQELWK"
     misc_feature    132..572
                     /gene="ZBTB18"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 18 (ZBTB18); Region:
                     BTB_POZ_ZBTB18_RP58; cd18324"
                     /db_xref="CDD:349633"
     misc_feature    <1011..>1574
                     /gene="ZBTB18"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1245..1307
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1365..1427
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1380..1382,1386..1388,1392..1394,1398..1403,
                     1410..1415,1422..1424,1464..1466,1470..1472,1482..1487,
                     1494..1499,1506..1508,1548..1550,1554..1556,1560..1562,
                     1566..1571,1578..1583)
                     /gene="ZBTB18"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1404..1472
                     /gene="ZBTB18"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1449..1511
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1533..1589
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cgggagggag ggagggggac cagcggagga ggaagcccac caagtccggc ggcggcggcg
       61 gccgggaggc ggaggacgcg gcggcggtgg ggacgcggtg acttagggcc gctccgtgtt
      121 atgaagacag tatggagttt ccagaccata gtagacattt gctgcagtgt ctgagcgagc
      181 agagacatca gggttttctt tgtgactgca ctgttctggt gggagatgcc cagttccgag
      241 cgcaccgagc tgtactggct tcatgcagca tgtatttcca cctcttttac aaggaccagc
      301 tggacaaaag agacattgtt catctgaaca gcgacattgt tacagcccca gccttcgctc
      361 tcctgcttga attcatgtat gaagggaaac tccagttcaa agacttgccc attgaagacg
      421 tgctagcagc tgccagttat ctccacatgt atgacattgt caaagtctgc aaaaagaagc
      481 tgaaagagaa agccaccaca gaggcagaca gcaccaaaaa ggaagaagac gcttcaagtt
      541 gttcggacaa agtcgagagt ctctctgatg gcagcagcca catggcaggc gatttgccca
      601 gtgatgaaga tgaaggggaa gatgaaaaat tgaacatctt gcctagcaaa agggacttgg
      661 cggccgagcc tgggaacatg tggatgcgat tgccctcgga ctcagcaggc atcccccagg
      721 ctggcggaga ggcagagcca cacgccacag cagctggaaa aacagtagcc agcccctgca
      781 gctcaacaga gtctttgtcc cagaggtctg tcacctccgt gagggattcg gcagatgttg
      841 actgtgtgct ggacctgtct gtcaagtcca gcctttcagg agttgaaaat ctgaacagct
      901 cttatttctc ttcacaggac gtgctgagaa gcaacctggt gcaggtgaag gtggagaaag
      961 aggcttcctg tgatgagagt gatgttggca ctaatgacta tgacatggaa catagcactg
     1021 tgaaagagag tgtgagcact aataacaggg tacagtatga gcctgcccat ctggctccgc
     1081 tgagggagga ctcggtcctg agggagctgg agcgggagga caaaggcagc gacgacgaga
     1141 tgatgacccc cgagagcgag cgggtccagg tggagggcgg catggagagc ggtctgctgc
     1201 cctacgtctc caacatcctg agcccggcgg gccagatctt catgtgcccc ctgtgcaaca
     1261 aggtcttccc cagcccgcac atcctgcaga tccacctgag cacgcacttc cgcgagcagg
     1321 acggcctgcg cagcaagccg gccgccgacg tcaacgtgcc cacctgctct ctgtgcggga
     1381 agacgttctc ctgcatgtac accctgaagc gccacgagag gactcactcg ggcgagaagc
     1441 cctacacgtg cacccagtgc ggcaagagct tccagtactc gcacaacctg agccgccacg
     1501 ccgtggtgca cacgcgcgaa aagccgcacg cctgcaagtg gtgcgagcgc aggttcacgc
     1561 agtccgggga cctgtaccgg cacatccgca agttccactg tgagttggtg aactccttgt
     1621 ccgtcaaaag cgaggcgctg agcctgcccg ctgtcagaga ctggacctta gaagatagct
     1681 ctcaagaact ctggaaataa ttttatatat atatataaat aatatatata tacctatata
     1741 taaatagatc tctatatagt tgtggtacgg tctaaaagca gtcttgtttc ctggaactga
     1801 aaggttgggg tattaacttg tttttgcact ttagaatagc atgagaatct cactaattta
     1861 gcattctggt aaaagaaact ttagagcaag tcggagaata gagaggtgtt tttctttctt
     1921 tcaagggggg taggggaagt aagccaataa gaacctttga aacaaatcgt cctatcacaa
     1981 aatgctttcc tagggcctat tttgtcagca ctgcggtgtc ttttgagctc tctctttttt
     2041 tcccaccttt tctttttttt taagtagaaa ttccctccgg ttttattagc ctctttatat
     2101 gtctcaaatt gcatgaatct tttctggctg ttggaaacct gaatgctttt agacccaaat
     2161 ggaaaatttc tgaaatgctg gattatctat ttttaaacaa gcagttgact taaaactttc
     2221 tgtggcaact tctggttttc tgacggttcc caatgagaga aattctgaaa gtacactggg
     2281 atcactggga cgctgtcttt gtgaaggttt gcttgggatg aaaaaggata ttgcagcttc
     2341 agcagtgttg aactgtgtgt tgaaaaatgt gaattactgt tattgtatac tgtaattgat
     2401 tacatgggct gggggggtgt caaaggactt gacaggttgt gttgatgctc ttagttgagt
     2461 cttgaaaagt aaatattaac gctacagaaa tgcatgagtt tcaatatatt ttttgtcttt
     2521 gtttgcattg tataacttta acgagtgagt ttaaaattat ttaatttcct tagaaaaata
     2581 gcaccatttg gaaaaaaaaa aaaacctggt gttatgaaga acgttaatgc actgttttta
     2641 ttttatataa tttaaattga ctttcccact gtctttaagt tgaaactgtt aagctgaata
     2701 aaaacttaag ctgcaaattg ataacttcgc tacataacaa ggaaaatata aatgtttaca
     2761 aaaggcttaa agatttgcat gtgcagtgtg cattttataa caaaacttct aattgcacaa
     2821 aacccaggcc agctcaaagt ttagatgtac acatttaccc agttgagcgt ttttagagta
     2881 actactgcac aaattgacaa taggtcattc tctttttttg ctcccctttt ctttttctcc
     2941 ccttcttcct ttccctccct tcctccttcc ctcccgcccc tcccccaccc cccccaaact
     3001 catgaaaaga ttctatggac tgaaaaagcc ccaggctgaa aggactggac tgccttgatt
     3061 gacatgggga agggggttag tagactatgt gtatcgcggc agcagaggct gcagcccaac
     3121 gtgtggtttt aatgaccagc acgcagggca aagcattttg cacagtgttt gttttcctgt
     3181 cttgcactta caaataaggt ctatgggagt agcatggaaa acgtttgctg tttttccctt
     3241 tttttttttt taattgcttt tgtttaaaat ttgatcgcct taactactgt aaacatagcc
     3301 tatttttgtg cttaagatac tgaatggaaa actccattgt gtgttgctgg actgttttgg
     3361 aaatatttgg tcaaatgtgt gttaatttgg ctgtaatggc atttaaagca aacaaacaaa
     3421 caaaaaaagc tgtgaaaatg gccttggagc attatcttta gttacttgaa gagtttctag
     3481 ttttttttaa atacagttta tgttaaaata atttttatta atttagagaa gacaatcaat
     3541 gtctgtgaga aaacggactt tcttttggat tttctttttg tggtcattgt gagtgattgc
     3601 tttttccttt tattagtttc acattcttcc tttgttctaa aacttagact gacatctagc
     3661 tttgacaatc atagtatgtt ttattttcct gaggggggaa taacttataa tgctgtttag
     3721 ttttgtacta ttggtgtgtt ggtgaatttt taaactgtgt gctaactgca ataaattata
     3781 tgaactgaga a
//
LOCUS       XM_032649193            6306 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 18
            (ZBTB18), transcript variant X5, mRNA.
ACCESSION   XM_032649193
VERSION     XM_032649193.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6306
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6306
                     /gene="ZBTB18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762317"
     CDS             2647..4215
                     /gene="ZBTB18"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 18
                     isoform X3"
                     /protein_id="XP_032505084.1"
                     /db_xref="GeneID:116762317"
                     /translation="MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLAS
                     CSMYFHLFYKDQLDKRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAAS
                     YLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHMAGDLPSDED
                     EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSS
                     TESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEK
                     EASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRELEREDKGSD
                     DEMMTPESERVQVEGGMESGLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTH
                     FREQDGLRSKPAADVNVPTCSLCGKTFSCMYTLKRHERTHSGEKPYTCTQCGKSFQYS
                     HNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHCELVNSLSVKSEALSLPAV
                     RDWTLEDSSQELWK"
     misc_feature    2647..3087
                     /gene="ZBTB18"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 18 (ZBTB18); Region:
                     BTB_POZ_ZBTB18_RP58; cd18324"
                     /db_xref="CDD:349633"
     misc_feature    <3526..>4089
                     /gene="ZBTB18"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    3760..3822
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3880..3942
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3895..3897,3901..3903,3907..3909,3913..3918,
                     3925..3930,3937..3939,3979..3981,3985..3987,3997..4002,
                     4009..4014,4021..4023,4063..4065,4069..4071,4075..4077,
                     4081..4086,4093..4098)
                     /gene="ZBTB18"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3919..3987
                     /gene="ZBTB18"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    3964..4026
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    4048..4104
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtttattaat ttgtctcatt gaactgaagt actttccagg atttcagaaa gtgcagtttc
       61 agcttgttga tattgagagt tgaaatttgc attaactggc agggtgagaa attttactga
      121 gaaggtagtt ttagataagt agttatataa gagtgaaata ataaggtgaa ccaggttgaa
      181 gtagtagttc tgaatagtct tccagtattc tgagacatgt ataccattat ctcagcagaa
      241 aaaaaaaaaa attgaagtgc cgtaataatg ttgaaatggg actggagatg tcaaatgggt
      301 tggtttaaaa atatccctaa gctgcctttg aaactaaacg ttggagttga ataaaagtga
      361 atctggattt cctgaatagc accgtggctt gagtgtgctg tcagtatgta agccagtcca
      421 ccaacttaag acagaagtgt tgctattcca taaatacagt agaactccat atgctgagtt
      481 tttcaatttc ttctgttaga aagtttggaa aaaaagggag actttgaagt attttgttta
      541 tactaacaga agagaaaagt tctcctaaga aaaagctggt ggcaggagtg tagaggagta
      601 gcatatggca ttaaaaggag cacagctgga ggtagcattt ccatctgaac atgatgtcag
      661 agcagctgac agcctgccat ccctcagcct tttattctaa cacacagaca gggagttagt
      721 gtgtgcggat ctgtggtgga gaaggtatct cattcctctc taacatcatc tccactttgc
      781 atctgtctct tagtctgctt tttttccacc gatgtaacag acctggagcc agcaagactc
      841 agaggaaagg acttaatcag gtttatgtgt cctaaaggta ggagtagcaa gagattagat
      901 ggagcatatt tctgttttgg tgtttattta attttaaaaa atcacattac ttttctaatc
      961 cagtttaaga ataaaatatg aacttgagta ttaaatgagc atcttattgg agttgagagt
     1021 cttgggcttg tttagtttta atttctatcc ctcttgctcg atcgggtaaa taactttaat
     1081 atgcagaaat atttcaagtt ttgagatgtt aagaaagact ttgaaatatt gctttttgag
     1141 atcaatttgg attaaaatcc tttttttgtt gttgttgttc actgctattt agatttcttt
     1201 tgcttttgga gtcgggggtg ggggagaaat agtaaactgt atggaatcca gcattcaaac
     1261 ttatatgaga agatttttct agttaagaag ctagattgtt gtgtaattaa ttccactgtg
     1321 aaactttatt cttcaaaaca ttcagcagca ctactgaaac atacagctgt agtgctttta
     1381 taaccgaagg gtttttttaa aagaaaaaaa aaaaaacttt tgtccccagg agaatagttt
     1441 gactggtttc ctcatttctc tttcaaatat atatttaaga gatcttttat ttcagcataa
     1501 cgataattat ttgcaggagt ttttgtgtta gcgactaatt tagaacttgt agatttgagc
     1561 tgcctgaatt ggccagacag ctgtaatcgc actcctctat tcttaatctc tttatctggg
     1621 cagcagctgc catatggcca cagtcagctg gatcagatgt ttataagctt ccttcttcgt
     1681 ccctctctgt cctctcagcc tcctaatttg atcacggcta ccttgtgagc tgccctccaa
     1741 tctttatttt tagccctctc aaggattagg attgatgtta gctgtggggc acttgaagtg
     1801 attgtattgt aaatcttggt ttattctagc agtggcatct tgcagaatgt attgggttag
     1861 gatgaaagtt ttagcccatt ttgggcaaag tgtagaagaa gcagggaagt aatttttaaa
     1921 tattaaatga atatgtatcc attctccaaa tgcacttttt gagatggatg gtgtggaact
     1981 ttgcttctgg tcataggaaa ggggaagtca ggtttaagga gttgaatttt gtggttgaat
     2041 tttgaccctt tgtacatctg tgtgtctcct gcctccattt taccctcttt caccagaaaa
     2101 taagggcaac agtgcatatt tgaaagaata aaagctagtc ggaaaacaaa atatatcaaa
     2161 ttatgttgaa acaaagtatt ttctgttgac tgaggtatcg gggagtcaaa agaatagttt
     2221 ctcttttact agcaagactt ttttttttct ttttttgtat ggtgaacctg taaagctttt
     2281 gagtttcatt tgaatgtaat atgcctttat ttaaaagttt gcattaattt taatatggaa
     2341 ctcattttgc tttgcaacag atcaaagttt agatgagaat tttcagagtt aaataaagcc
     2401 cttctggttc ttaatattct agatgtacag attttacaaa gaaatataac catttctttt
     2461 tctcaattca ttaaaaaaaa tttggatttg ttcatagtag agatgatctt ttccatctgt
     2521 tggtgtagtt ccttctgatc tcatacatgt gtgctatacc tgcaaatctt aaggcattaa
     2581 catctgtttc tatacacagg gcttttgttg ttttaacact ctgactttaa aagttatgaa
     2641 gacagtatgg agtttccaga ccatagtaga catttgctgc agtgtctgag cgagcagaga
     2701 catcagggtt ttctttgtga ctgcactgtt ctggtgggag atgcccagtt ccgagcgcac
     2761 cgagctgtac tggcttcatg cagcatgtat ttccacctct tttacaagga ccagctggac
     2821 aaaagagaca ttgttcatct gaacagcgac attgttacag ccccagcctt cgctctcctg
     2881 cttgaattca tgtatgaagg gaaactccag ttcaaagact tgcccattga agacgtgcta
     2941 gcagctgcca gttatctcca catgtatgac attgtcaaag tctgcaaaaa gaagctgaaa
     3001 gagaaagcca ccacagaggc agacagcacc aaaaaggaag aagacgcttc aagttgttcg
     3061 gacaaagtcg agagtctctc tgatggcagc agccacatgg caggcgattt gcccagtgat
     3121 gaagatgaag gggaagatga aaaattgaac atcttgccta gcaaaaggga cttggcggcc
     3181 gagcctggga acatgtggat gcgattgccc tcggactcag caggcatccc ccaggctggc
     3241 ggagaggcag agccacacgc cacagcagct ggaaaaacag tagccagccc ctgcagctca
     3301 acagagtctt tgtcccagag gtctgtcacc tccgtgaggg attcggcaga tgttgactgt
     3361 gtgctggacc tgtctgtcaa gtccagcctt tcaggagttg aaaatctgaa cagctcttat
     3421 ttctcttcac aggacgtgct gagaagcaac ctggtgcagg tgaaggtgga gaaagaggct
     3481 tcctgtgatg agagtgatgt tggcactaat gactatgaca tggaacatag cactgtgaaa
     3541 gagagtgtga gcactaataa cagggtacag tatgagcctg cccatctggc tccgctgagg
     3601 gaggactcgg tcctgaggga gctggagcgg gaggacaaag gcagcgacga cgagatgatg
     3661 acccccgaga gcgagcgggt ccaggtggag ggcggcatgg agagcggtct gctgccctac
     3721 gtctccaaca tcctgagccc ggcgggccag atcttcatgt gccccctgtg caacaaggtc
     3781 ttccccagcc cgcacatcct gcagatccac ctgagcacgc acttccgcga gcaggacggc
     3841 ctgcgcagca agccggccgc cgacgtcaac gtgcccacct gctctctgtg cgggaagacg
     3901 ttctcctgca tgtacaccct gaagcgccac gagaggactc actcgggcga gaagccctac
     3961 acgtgcaccc agtgcggcaa gagcttccag tactcgcaca acctgagccg ccacgccgtg
     4021 gtgcacacgc gcgaaaagcc gcacgcctgc aagtggtgcg agcgcaggtt cacgcagtcc
     4081 ggggacctgt accggcacat ccgcaagttc cactgtgagt tggtgaactc cttgtccgtc
     4141 aaaagcgagg cgctgagcct gcccgctgtc agagactgga ccttagaaga tagctctcaa
     4201 gaactctgga aataatttta tatatatata taaataatat atatatacct atatataaat
     4261 agatctctat atagttgtgg tacggtctaa aagcagtctt gtttcctgga actgaaaggt
     4321 tggggtatta acttgttttt gcactttaga atagcatgag aatctcacta atttagcatt
     4381 ctggtaaaag aaactttaga gcaagtcgga gaatagagag gtgtttttct ttctttcaag
     4441 gggggtaggg gaagtaagcc aataagaacc tttgaaacaa atcgtcctat cacaaaatgc
     4501 tttcctaggg cctattttgt cagcactgcg gtgtcttttg agctctctct ttttttccca
     4561 ccttttcttt ttttttaagt agaaattccc tccggtttta ttagcctctt tatatgtctc
     4621 aaattgcatg aatcttttct ggctgttgga aacctgaatg cttttagacc caaatggaaa
     4681 atttctgaaa tgctggatta tctattttta aacaagcagt tgacttaaaa ctttctgtgg
     4741 caacttctgg ttttctgacg gttcccaatg agagaaattc tgaaagtaca ctgggatcac
     4801 tgggacgctg tctttgtgaa ggtttgcttg ggatgaaaaa ggatattgca gcttcagcag
     4861 tgttgaactg tgtgttgaaa aatgtgaatt actgttattg tatactgtaa ttgattacat
     4921 gggctggggg ggtgtcaaag gacttgacag gttgtgttga tgctcttagt tgagtcttga
     4981 aaagtaaata ttaacgctac agaaatgcat gagtttcaat atattttttg tctttgtttg
     5041 cattgtataa ctttaacgag tgagtttaaa attatttaat ttccttagaa aaatagcacc
     5101 atttggaaaa aaaaaaaaac ctggtgttat gaagaacgtt aatgcactgt ttttatttta
     5161 tataatttaa attgactttc ccactgtctt taagttgaaa ctgttaagct gaataaaaac
     5221 ttaagctgca aattgataac ttcgctacat aacaaggaaa atataaatgt ttacaaaagg
     5281 cttaaagatt tgcatgtgca gtgtgcattt tataacaaaa cttctaattg cacaaaaccc
     5341 aggccagctc aaagtttaga tgtacacatt tacccagttg agcgttttta gagtaactac
     5401 tgcacaaatt gacaataggt cattctcttt ttttgctccc cttttctttt tctccccttc
     5461 ttcctttccc tcccttcctc cttccctccc gcccctcccc cacccccccc aaactcatga
     5521 aaagattcta tggactgaaa aagccccagg ctgaaaggac tggactgcct tgattgacat
     5581 ggggaagggg gttagtagac tatgtgtatc gcggcagcag aggctgcagc ccaacgtgtg
     5641 gttttaatga ccagcacgca gggcaaagca ttttgcacag tgtttgtttt cctgtcttgc
     5701 acttacaaat aaggtctatg ggagtagcat ggaaaacgtt tgctgttttt cccttttttt
     5761 ttttttaatt gcttttgttt aaaatttgat cgccttaact actgtaaaca tagcctattt
     5821 ttgtgcttaa gatactgaat ggaaaactcc attgtgtgtt gctggactgt tttggaaata
     5881 tttggtcaaa tgtgtgttaa tttggctgta atggcattta aagcaaacaa acaaacaaaa
     5941 aaagctgtga aaatggcctt ggagcattat ctttagttac ttgaagagtt tctagttttt
     6001 tttaaataca gtttatgtta aaataatttt tattaattta gagaagacaa tcaatgtctg
     6061 tgagaaaacg gactttcttt tggattttct ttttgtggtc attgtgagtg attgcttttt
     6121 ccttttatta gtttcacatt cttcctttgt tctaaaactt agactgacat ctagctttga
     6181 caatcatagt atgttttatt ttcctgaggg gggaataact tataatgctg tttagttttg
     6241 tactattggt gtgttggtga atttttaaac tgtgtgctaa ctgcaataaa ttatatgaac
     6301 tgagaa
//
LOCUS       XM_032649200            4308 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 18
            (ZBTB18), transcript variant X6, mRNA.
ACCESSION   XM_032649200
VERSION     XM_032649200.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4308
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4308
                     /gene="ZBTB18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762317"
     CDS             649..2217
                     /gene="ZBTB18"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 18
                     isoform X3"
                     /protein_id="XP_032505091.1"
                     /db_xref="GeneID:116762317"
                     /translation="MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLAS
                     CSMYFHLFYKDQLDKRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAAS
                     YLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHMAGDLPSDED
                     EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSS
                     TESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEK
                     EASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRELEREDKGSD
                     DEMMTPESERVQVEGGMESGLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTH
                     FREQDGLRSKPAADVNVPTCSLCGKTFSCMYTLKRHERTHSGEKPYTCTQCGKSFQYS
                     HNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHCELVNSLSVKSEALSLPAV
                     RDWTLEDSSQELWK"
     misc_feature    649..1089
                     /gene="ZBTB18"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 18 (ZBTB18); Region:
                     BTB_POZ_ZBTB18_RP58; cd18324"
                     /db_xref="CDD:349633"
     misc_feature    <1528..>2091
                     /gene="ZBTB18"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1762..1824
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1882..1944
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1897..1899,1903..1905,1909..1911,1915..1920,
                     1927..1932,1939..1941,1981..1983,1987..1989,1999..2004,
                     2011..2016,2023..2025,2065..2067,2071..2073,2077..2079,
                     2083..2088,2095..2100)
                     /gene="ZBTB18"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1921..1989
                     /gene="ZBTB18"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1966..2028
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2050..2106
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 attaatgtct gatatattgg aatgaggcga gggcatttgt gcagaatagg tggtctggct
       61 gagaaggaat ttatccccaa agagtgcctc ctgaaatagg cattcgtaat tatgtcattc
      121 atcgcgaagt tagagaaagt tgggtttgcg actttgggaa agcaagaagc acaggataga
      181 gaccttggtc tttgttactc tttatttaac tcttggtcat ggttttctaa tgagaacgga
      241 gcggttatca ccaggactgt gacacttgcg cctcaggccc cagcgccttt tctgctgcac
      301 tctcccacaa gagtctgtgg agacttcgac attcacagat gtcgcagccc cttgcagggc
      361 actggtcagg ccagcccggg ttacgttaca atttcatcag ccattcgaaa agacccgcaa
      421 atctagctga aaagttcccc aacttgctag acctggcttc ccccacccct tccccctttc
      481 tccctgaaag gctttcttgt gatcatgaac attacagtga cccaaaaaaa gattgttatg
      541 ggacacagat caaggggaag accaagttct ctttctgagc agaaagtcgg atcagatacg
      601 cagatgcagc attcatttta actggctgta gcaggttatg aagacagtat ggagtttcca
      661 gaccatagta gacatttgct gcagtgtctg agcgagcaga gacatcaggg ttttctttgt
      721 gactgcactg ttctggtggg agatgcccag ttccgagcgc accgagctgt actggcttca
      781 tgcagcatgt atttccacct cttttacaag gaccagctgg acaaaagaga cattgttcat
      841 ctgaacagcg acattgttac agccccagcc ttcgctctcc tgcttgaatt catgtatgaa
      901 gggaaactcc agttcaaaga cttgcccatt gaagacgtgc tagcagctgc cagttatctc
      961 cacatgtatg acattgtcaa agtctgcaaa aagaagctga aagagaaagc caccacagag
     1021 gcagacagca ccaaaaagga agaagacgct tcaagttgtt cggacaaagt cgagagtctc
     1081 tctgatggca gcagccacat ggcaggcgat ttgcccagtg atgaagatga aggggaagat
     1141 gaaaaattga acatcttgcc tagcaaaagg gacttggcgg ccgagcctgg gaacatgtgg
     1201 atgcgattgc cctcggactc agcaggcatc ccccaggctg gcggagaggc agagccacac
     1261 gccacagcag ctggaaaaac agtagccagc ccctgcagct caacagagtc tttgtcccag
     1321 aggtctgtca cctccgtgag ggattcggca gatgttgact gtgtgctgga cctgtctgtc
     1381 aagtccagcc tttcaggagt tgaaaatctg aacagctctt atttctcttc acaggacgtg
     1441 ctgagaagca acctggtgca ggtgaaggtg gagaaagagg cttcctgtga tgagagtgat
     1501 gttggcacta atgactatga catggaacat agcactgtga aagagagtgt gagcactaat
     1561 aacagggtac agtatgagcc tgcccatctg gctccgctga gggaggactc ggtcctgagg
     1621 gagctggagc gggaggacaa aggcagcgac gacgagatga tgacccccga gagcgagcgg
     1681 gtccaggtgg agggcggcat ggagagcggt ctgctgccct acgtctccaa catcctgagc
     1741 ccggcgggcc agatcttcat gtgccccctg tgcaacaagg tcttccccag cccgcacatc
     1801 ctgcagatcc acctgagcac gcacttccgc gagcaggacg gcctgcgcag caagccggcc
     1861 gccgacgtca acgtgcccac ctgctctctg tgcgggaaga cgttctcctg catgtacacc
     1921 ctgaagcgcc acgagaggac tcactcgggc gagaagccct acacgtgcac ccagtgcggc
     1981 aagagcttcc agtactcgca caacctgagc cgccacgccg tggtgcacac gcgcgaaaag
     2041 ccgcacgcct gcaagtggtg cgagcgcagg ttcacgcagt ccggggacct gtaccggcac
     2101 atccgcaagt tccactgtga gttggtgaac tccttgtccg tcaaaagcga ggcgctgagc
     2161 ctgcccgctg tcagagactg gaccttagaa gatagctctc aagaactctg gaaataattt
     2221 tatatatata tataaataat atatatatac ctatatataa atagatctct atatagttgt
     2281 ggtacggtct aaaagcagtc ttgtttcctg gaactgaaag gttggggtat taacttgttt
     2341 ttgcacttta gaatagcatg agaatctcac taatttagca ttctggtaaa agaaacttta
     2401 gagcaagtcg gagaatagag aggtgttttt ctttctttca aggggggtag gggaagtaag
     2461 ccaataagaa cctttgaaac aaatcgtcct atcacaaaat gctttcctag ggcctatttt
     2521 gtcagcactg cggtgtcttt tgagctctct ctttttttcc caccttttct ttttttttaa
     2581 gtagaaattc cctccggttt tattagcctc tttatatgtc tcaaattgca tgaatctttt
     2641 ctggctgttg gaaacctgaa tgcttttaga cccaaatgga aaatttctga aatgctggat
     2701 tatctatttt taaacaagca gttgacttaa aactttctgt ggcaacttct ggttttctga
     2761 cggttcccaa tgagagaaat tctgaaagta cactgggatc actgggacgc tgtctttgtg
     2821 aaggtttgct tgggatgaaa aaggatattg cagcttcagc agtgttgaac tgtgtgttga
     2881 aaaatgtgaa ttactgttat tgtatactgt aattgattac atgggctggg ggggtgtcaa
     2941 aggacttgac aggttgtgtt gatgctctta gttgagtctt gaaaagtaaa tattaacgct
     3001 acagaaatgc atgagtttca atatattttt tgtctttgtt tgcattgtat aactttaacg
     3061 agtgagttta aaattattta atttccttag aaaaatagca ccatttggaa aaaaaaaaaa
     3121 acctggtgtt atgaagaacg ttaatgcact gtttttattt tatataattt aaattgactt
     3181 tcccactgtc tttaagttga aactgttaag ctgaataaaa acttaagctg caaattgata
     3241 acttcgctac ataacaagga aaatataaat gtttacaaaa ggcttaaaga tttgcatgtg
     3301 cagtgtgcat tttataacaa aacttctaat tgcacaaaac ccaggccagc tcaaagttta
     3361 gatgtacaca tttacccagt tgagcgtttt tagagtaact actgcacaaa ttgacaatag
     3421 gtcattctct ttttttgctc cccttttctt tttctcccct tcttcctttc cctcccttcc
     3481 tccttccctc ccgcccctcc cccacccccc ccaaactcat gaaaagattc tatggactga
     3541 aaaagcccca ggctgaaagg actggactgc cttgattgac atggggaagg gggttagtag
     3601 actatgtgta tcgcggcagc agaggctgca gcccaacgtg tggttttaat gaccagcacg
     3661 cagggcaaag cattttgcac agtgtttgtt ttcctgtctt gcacttacaa ataaggtcta
     3721 tgggagtagc atggaaaacg tttgctgttt ttcccttttt ttttttttaa ttgcttttgt
     3781 ttaaaatttg atcgccttaa ctactgtaaa catagcctat ttttgtgctt aagatactga
     3841 atggaaaact ccattgtgtg ttgctggact gttttggaaa tatttggtca aatgtgtgtt
     3901 aatttggctg taatggcatt taaagcaaac aaacaaacaa aaaaagctgt gaaaatggcc
     3961 ttggagcatt atctttagtt acttgaagag tttctagttt tttttaaata cagtttatgt
     4021 taaaataatt tttattaatt tagagaagac aatcaatgtc tgtgagaaaa cggactttct
     4081 tttggatttt ctttttgtgg tcattgtgag tgattgcttt ttccttttat tagtttcaca
     4141 ttcttccttt gttctaaaac ttagactgac atctagcttt gacaatcata gtatgtttta
     4201 ttttcctgag gggggaataa cttataatgc tgtttagttt tgtactattg gtgtgttggt
     4261 gaatttttaa actgtgtgct aactgcaata aattatatga actgagaa
//
LOCUS       XM_032649208            4207 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 18
            (ZBTB18), transcript variant X7, mRNA.
ACCESSION   XM_032649208
VERSION     XM_032649208.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4207
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4207
                     /gene="ZBTB18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762317"
     CDS             548..2116
                     /gene="ZBTB18"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 18
                     isoform X3"
                     /protein_id="XP_032505099.1"
                     /db_xref="GeneID:116762317"
                     /translation="MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLAS
                     CSMYFHLFYKDQLDKRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAAS
                     YLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHMAGDLPSDED
                     EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSS
                     TESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEK
                     EASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRELEREDKGSD
                     DEMMTPESERVQVEGGMESGLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTH
                     FREQDGLRSKPAADVNVPTCSLCGKTFSCMYTLKRHERTHSGEKPYTCTQCGKSFQYS
                     HNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHCELVNSLSVKSEALSLPAV
                     RDWTLEDSSQELWK"
     misc_feature    548..988
                     /gene="ZBTB18"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 18 (ZBTB18); Region:
                     BTB_POZ_ZBTB18_RP58; cd18324"
                     /db_xref="CDD:349633"
     misc_feature    <1427..>1990
                     /gene="ZBTB18"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1661..1723
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1781..1843
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1796..1798,1802..1804,1808..1810,1814..1819,
                     1826..1831,1838..1840,1880..1882,1886..1888,1898..1903,
                     1910..1915,1922..1924,1964..1966,1970..1972,1976..1978,
                     1982..1987,1994..1999)
                     /gene="ZBTB18"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1820..1888
                     /gene="ZBTB18"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1865..1927
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1949..2005
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cgcggggcgg gggcttggga gcggtgcagc tgcacggcgc cgggacggcc gtggctccgg
       61 ggacccttgc agctgcggcg gcgcccgcgg ggaggcccct cccggtccgg ggcagttgcc
      121 gggggctcgc gccgcggcgg cagggaagca gtagcagcca ccctcccccg gcttcttacg
      181 acttttcttt tgttgttgcc gtgacccggg tctgttttct tgtctgttgt ttaaggtgtt
      241 ttcctgctgc accggctcta cgccctccac ctccttccct gtggtttaac cttcctcttt
      301 cccctagtgt tttatgcaca gccaactacg taaagatttg catttcttcc cccctccctg
      361 ctccgcaccc ccgtccccac ccccacctcc ttgaaaaaca aaacccaacc tcgcaaaacc
      421 tctccggacc tgaggctgcg aggcgcagag gggctgattt gtggagtggg agtcgctggc
      481 ccattgcggt gctcggggct cattaaactg tcactcgccc cccaccccac tgggttatga
      541 agacagtatg gagtttccag accatagtag acatttgctg cagtgtctga gcgagcagag
      601 acatcagggt tttctttgtg actgcactgt tctggtggga gatgcccagt tccgagcgca
      661 ccgagctgta ctggcttcat gcagcatgta tttccacctc ttttacaagg accagctgga
      721 caaaagagac attgttcatc tgaacagcga cattgttaca gccccagcct tcgctctcct
      781 gcttgaattc atgtatgaag ggaaactcca gttcaaagac ttgcccattg aagacgtgct
      841 agcagctgcc agttatctcc acatgtatga cattgtcaaa gtctgcaaaa agaagctgaa
      901 agagaaagcc accacagagg cagacagcac caaaaaggaa gaagacgctt caagttgttc
      961 ggacaaagtc gagagtctct ctgatggcag cagccacatg gcaggcgatt tgcccagtga
     1021 tgaagatgaa ggggaagatg aaaaattgaa catcttgcct agcaaaaggg acttggcggc
     1081 cgagcctggg aacatgtgga tgcgattgcc ctcggactca gcaggcatcc cccaggctgg
     1141 cggagaggca gagccacacg ccacagcagc tggaaaaaca gtagccagcc cctgcagctc
     1201 aacagagtct ttgtcccaga ggtctgtcac ctccgtgagg gattcggcag atgttgactg
     1261 tgtgctggac ctgtctgtca agtccagcct ttcaggagtt gaaaatctga acagctctta
     1321 tttctcttca caggacgtgc tgagaagcaa cctggtgcag gtgaaggtgg agaaagaggc
     1381 ttcctgtgat gagagtgatg ttggcactaa tgactatgac atggaacata gcactgtgaa
     1441 agagagtgtg agcactaata acagggtaca gtatgagcct gcccatctgg ctccgctgag
     1501 ggaggactcg gtcctgaggg agctggagcg ggaggacaaa ggcagcgacg acgagatgat
     1561 gacccccgag agcgagcggg tccaggtgga gggcggcatg gagagcggtc tgctgcccta
     1621 cgtctccaac atcctgagcc cggcgggcca gatcttcatg tgccccctgt gcaacaaggt
     1681 cttccccagc ccgcacatcc tgcagatcca cctgagcacg cacttccgcg agcaggacgg
     1741 cctgcgcagc aagccggccg ccgacgtcaa cgtgcccacc tgctctctgt gcgggaagac
     1801 gttctcctgc atgtacaccc tgaagcgcca cgagaggact cactcgggcg agaagcccta
     1861 cacgtgcacc cagtgcggca agagcttcca gtactcgcac aacctgagcc gccacgccgt
     1921 ggtgcacacg cgcgaaaagc cgcacgcctg caagtggtgc gagcgcaggt tcacgcagtc
     1981 cggggacctg taccggcaca tccgcaagtt ccactgtgag ttggtgaact ccttgtccgt
     2041 caaaagcgag gcgctgagcc tgcccgctgt cagagactgg accttagaag atagctctca
     2101 agaactctgg aaataatttt atatatatat ataaataata tatatatacc tatatataaa
     2161 tagatctcta tatagttgtg gtacggtcta aaagcagtct tgtttcctgg aactgaaagg
     2221 ttggggtatt aacttgtttt tgcactttag aatagcatga gaatctcact aatttagcat
     2281 tctggtaaaa gaaactttag agcaagtcgg agaatagaga ggtgtttttc tttctttcaa
     2341 ggggggtagg ggaagtaagc caataagaac ctttgaaaca aatcgtccta tcacaaaatg
     2401 ctttcctagg gcctattttg tcagcactgc ggtgtctttt gagctctctc tttttttccc
     2461 accttttctt tttttttaag tagaaattcc ctccggtttt attagcctct ttatatgtct
     2521 caaattgcat gaatcttttc tggctgttgg aaacctgaat gcttttagac ccaaatggaa
     2581 aatttctgaa atgctggatt atctattttt aaacaagcag ttgacttaaa actttctgtg
     2641 gcaacttctg gttttctgac ggttcccaat gagagaaatt ctgaaagtac actgggatca
     2701 ctgggacgct gtctttgtga aggtttgctt gggatgaaaa aggatattgc agcttcagca
     2761 gtgttgaact gtgtgttgaa aaatgtgaat tactgttatt gtatactgta attgattaca
     2821 tgggctgggg gggtgtcaaa ggacttgaca ggttgtgttg atgctcttag ttgagtcttg
     2881 aaaagtaaat attaacgcta cagaaatgca tgagtttcaa tatatttttt gtctttgttt
     2941 gcattgtata actttaacga gtgagtttaa aattatttaa tttccttaga aaaatagcac
     3001 catttggaaa aaaaaaaaaa cctggtgtta tgaagaacgt taatgcactg tttttatttt
     3061 atataattta aattgacttt cccactgtct ttaagttgaa actgttaagc tgaataaaaa
     3121 cttaagctgc aaattgataa cttcgctaca taacaaggaa aatataaatg tttacaaaag
     3181 gcttaaagat ttgcatgtgc agtgtgcatt ttataacaaa acttctaatt gcacaaaacc
     3241 caggccagct caaagtttag atgtacacat ttacccagtt gagcgttttt agagtaacta
     3301 ctgcacaaat tgacaatagg tcattctctt tttttgctcc ccttttcttt ttctcccctt
     3361 cttcctttcc ctcccttcct ccttccctcc cgcccctccc ccaccccccc caaactcatg
     3421 aaaagattct atggactgaa aaagccccag gctgaaagga ctggactgcc ttgattgaca
     3481 tggggaaggg ggttagtaga ctatgtgtat cgcggcagca gaggctgcag cccaacgtgt
     3541 ggttttaatg accagcacgc agggcaaagc attttgcaca gtgtttgttt tcctgtcttg
     3601 cacttacaaa taaggtctat gggagtagca tggaaaacgt ttgctgtttt tccctttttt
     3661 tttttttaat tgcttttgtt taaaatttga tcgccttaac tactgtaaac atagcctatt
     3721 tttgtgctta agatactgaa tggaaaactc cattgtgtgt tgctggactg ttttggaaat
     3781 atttggtcaa atgtgtgtta atttggctgt aatggcattt aaagcaaaca aacaaacaaa
     3841 aaaagctgtg aaaatggcct tggagcatta tctttagtta cttgaagagt ttctagtttt
     3901 ttttaaatac agtttatgtt aaaataattt ttattaattt agagaagaca atcaatgtct
     3961 gtgagaaaac ggactttctt ttggattttc tttttgtggt cattgtgagt gattgctttt
     4021 tccttttatt agtttcacat tcttcctttg ttctaaaact tagactgaca tctagctttg
     4081 acaatcatag tatgttttat tttcctgagg ggggaataac ttataatgct gtttagtttt
     4141 gtactattgg tgtgttggtg aatttttaaa ctgtgtgcta actgcaataa attatatgaa
     4201 ctgagaa
//
LOCUS       XM_032649216            3691 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 18
            (ZBTB18), transcript variant X8, mRNA.
ACCESSION   XM_032649216
VERSION     XM_032649216.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3691
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3691
                     /gene="ZBTB18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762317"
     CDS             32..1600
                     /gene="ZBTB18"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 18
                     isoform X3"
                     /protein_id="XP_032505107.1"
                     /db_xref="GeneID:116762317"
                     /translation="MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLAS
                     CSMYFHLFYKDQLDKRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAAS
                     YLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHMAGDLPSDED
                     EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSS
                     TESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEK
                     EASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRELEREDKGSD
                     DEMMTPESERVQVEGGMESGLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTH
                     FREQDGLRSKPAADVNVPTCSLCGKTFSCMYTLKRHERTHSGEKPYTCTQCGKSFQYS
                     HNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHCELVNSLSVKSEALSLPAV
                     RDWTLEDSSQELWK"
     misc_feature    32..472
                     /gene="ZBTB18"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 18 (ZBTB18); Region:
                     BTB_POZ_ZBTB18_RP58; cd18324"
                     /db_xref="CDD:349633"
     misc_feature    <911..>1474
                     /gene="ZBTB18"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1145..1207
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1265..1327
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1280..1282,1286..1288,1292..1294,1298..1303,
                     1310..1315,1322..1324,1364..1366,1370..1372,1382..1387,
                     1394..1399,1406..1408,1448..1450,1454..1456,1460..1462,
                     1466..1471,1478..1483)
                     /gene="ZBTB18"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1304..1372
                     /gene="ZBTB18"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1349..1411
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1433..1489
                     /gene="ZBTB18"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cgccgcgtgc gtgcgtggtt atgaagacag tatggagttt ccagaccata gtagacattt
       61 gctgcagtgt ctgagcgagc agagacatca gggttttctt tgtgactgca ctgttctggt
      121 gggagatgcc cagttccgag cgcaccgagc tgtactggct tcatgcagca tgtatttcca
      181 cctcttttac aaggaccagc tggacaaaag agacattgtt catctgaaca gcgacattgt
      241 tacagcccca gccttcgctc tcctgcttga attcatgtat gaagggaaac tccagttcaa
      301 agacttgccc attgaagacg tgctagcagc tgccagttat ctccacatgt atgacattgt
      361 caaagtctgc aaaaagaagc tgaaagagaa agccaccaca gaggcagaca gcaccaaaaa
      421 ggaagaagac gcttcaagtt gttcggacaa agtcgagagt ctctctgatg gcagcagcca
      481 catggcaggc gatttgccca gtgatgaaga tgaaggggaa gatgaaaaat tgaacatctt
      541 gcctagcaaa agggacttgg cggccgagcc tgggaacatg tggatgcgat tgccctcgga
      601 ctcagcaggc atcccccagg ctggcggaga ggcagagcca cacgccacag cagctggaaa
      661 aacagtagcc agcccctgca gctcaacaga gtctttgtcc cagaggtctg tcacctccgt
      721 gagggattcg gcagatgttg actgtgtgct ggacctgtct gtcaagtcca gcctttcagg
      781 agttgaaaat ctgaacagct cttatttctc ttcacaggac gtgctgagaa gcaacctggt
      841 gcaggtgaag gtggagaaag aggcttcctg tgatgagagt gatgttggca ctaatgacta
      901 tgacatggaa catagcactg tgaaagagag tgtgagcact aataacaggg tacagtatga
      961 gcctgcccat ctggctccgc tgagggagga ctcggtcctg agggagctgg agcgggagga
     1021 caaaggcagc gacgacgaga tgatgacccc cgagagcgag cgggtccagg tggagggcgg
     1081 catggagagc ggtctgctgc cctacgtctc caacatcctg agcccggcgg gccagatctt
     1141 catgtgcccc ctgtgcaaca aggtcttccc cagcccgcac atcctgcaga tccacctgag
     1201 cacgcacttc cgcgagcagg acggcctgcg cagcaagccg gccgccgacg tcaacgtgcc
     1261 cacctgctct ctgtgcggga agacgttctc ctgcatgtac accctgaagc gccacgagag
     1321 gactcactcg ggcgagaagc cctacacgtg cacccagtgc ggcaagagct tccagtactc
     1381 gcacaacctg agccgccacg ccgtggtgca cacgcgcgaa aagccgcacg cctgcaagtg
     1441 gtgcgagcgc aggttcacgc agtccgggga cctgtaccgg cacatccgca agttccactg
     1501 tgagttggtg aactccttgt ccgtcaaaag cgaggcgctg agcctgcccg ctgtcagaga
     1561 ctggacctta gaagatagct ctcaagaact ctggaaataa ttttatatat atatataaat
     1621 aatatatata tacctatata taaatagatc tctatatagt tgtggtacgg tctaaaagca
     1681 gtcttgtttc ctggaactga aaggttgggg tattaacttg tttttgcact ttagaatagc
     1741 atgagaatct cactaattta gcattctggt aaaagaaact ttagagcaag tcggagaata
     1801 gagaggtgtt tttctttctt tcaagggggg taggggaagt aagccaataa gaacctttga
     1861 aacaaatcgt cctatcacaa aatgctttcc tagggcctat tttgtcagca ctgcggtgtc
     1921 ttttgagctc tctctttttt tcccaccttt tctttttttt taagtagaaa ttccctccgg
     1981 ttttattagc ctctttatat gtctcaaatt gcatgaatct tttctggctg ttggaaacct
     2041 gaatgctttt agacccaaat ggaaaatttc tgaaatgctg gattatctat ttttaaacaa
     2101 gcagttgact taaaactttc tgtggcaact tctggttttc tgacggttcc caatgagaga
     2161 aattctgaaa gtacactggg atcactggga cgctgtcttt gtgaaggttt gcttgggatg
     2221 aaaaaggata ttgcagcttc agcagtgttg aactgtgtgt tgaaaaatgt gaattactgt
     2281 tattgtatac tgtaattgat tacatgggct gggggggtgt caaaggactt gacaggttgt
     2341 gttgatgctc ttagttgagt cttgaaaagt aaatattaac gctacagaaa tgcatgagtt
     2401 tcaatatatt ttttgtcttt gtttgcattg tataacttta acgagtgagt ttaaaattat
     2461 ttaatttcct tagaaaaata gcaccatttg gaaaaaaaaa aaaacctggt gttatgaaga
     2521 acgttaatgc actgttttta ttttatataa tttaaattga ctttcccact gtctttaagt
     2581 tgaaactgtt aagctgaata aaaacttaag ctgcaaattg ataacttcgc tacataacaa
     2641 ggaaaatata aatgtttaca aaaggcttaa agatttgcat gtgcagtgtg cattttataa
     2701 caaaacttct aattgcacaa aacccaggcc agctcaaagt ttagatgtac acatttaccc
     2761 agttgagcgt ttttagagta actactgcac aaattgacaa taggtcattc tctttttttg
     2821 ctcccctttt ctttttctcc ccttcttcct ttccctccct tcctccttcc ctcccgcccc
     2881 tcccccaccc cccccaaact catgaaaaga ttctatggac tgaaaaagcc ccaggctgaa
     2941 aggactggac tgccttgatt gacatgggga agggggttag tagactatgt gtatcgcggc
     3001 agcagaggct gcagcccaac gtgtggtttt aatgaccagc acgcagggca aagcattttg
     3061 cacagtgttt gttttcctgt cttgcactta caaataaggt ctatgggagt agcatggaaa
     3121 acgtttgctg tttttccctt tttttttttt taattgcttt tgtttaaaat ttgatcgcct
     3181 taactactgt aaacatagcc tatttttgtg cttaagatac tgaatggaaa actccattgt
     3241 gtgttgctgg actgttttgg aaatatttgg tcaaatgtgt gttaatttgg ctgtaatggc
     3301 atttaaagca aacaaacaaa caaaaaaagc tgtgaaaatg gccttggagc attatcttta
     3361 gttacttgaa gagtttctag ttttttttaa atacagttta tgttaaaata atttttatta
     3421 atttagagaa gacaatcaat gtctgtgaga aaacggactt tcttttggat tttctttttg
     3481 tggtcattgt gagtgattgc tttttccttt tattagtttc acattcttcc tttgttctaa
     3541 aacttagact gacatctagc tttgacaatc atagtatgtt ttattttcct gaggggggaa
     3601 taacttataa tgctgtttag ttttgtacta ttggtgtgtt ggtgaatttt taaactgtgt
     3661 gctaactgca ataaattata tgaactgaga a
//
LOCUS       XM_032649230            3782 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G5 (PLEKHG5), transcript variant X1, mRNA.
ACCESSION   XM_032649230
VERSION     XM_032649230.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3782
                     /gene="PLEKHG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762355"
     CDS             1..3225
                     /gene="PLEKHG5"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 5 isoform X1"
                     /protein_id="XP_032505121.1"
                     /db_xref="GeneID:116762355"
                     /translation="MGTGPGVSGRRAASRPSPGLPSRDSEPGWAGGRGRHGEDQICHH
                     ADCQQLHRRGPLSLCEACDSKFHGAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSP
                     AVDIEEEEESSVDGKGDRKSTGLKLSKKKAWRRHTDDPSKECFTLKFDLNVDIETEIV
                     PAMKKKSLGEVLLPVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAKPG
                     DEGKVEQGVKDSKSLSLPILRPAGAGPPTQERVDPQSRRESLDILAPGRRRKNMSEFL
                     GEASIPGQEPPAPSSCSLPSGSSSGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGR
                     EVAKLEQLESKLHAYSLFGLPRLPRRLCFDHDSWEEEGDEEEYEDDACLRLEDSWREL
                     IDGHEKLTRRQCHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEAE
                     RLFSNVPEIARLHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYC
                     MEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKS
                     VLRKTDEPRAKEAVVTMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVEGSN
                     DEVDKLLKEFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLL
                     VTKAVKKAERTKVIRPPLLVEKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQAL
                     CRGWVDAIYDAQSQLQQLRVQEHPGSQQHLQSLEEEEDGQEDEDEEGGESSASAASSP
                     TALRKSSSSLDSQRCVSDGSTETLAVVVVEPGGMLSSPEFEGGPFSSQSDKTSLGTTA
                     SSVTPTSELLPLGPVDGRSCSIDSAYGTLSPTSLQEFMAPAPMVEPALRPPESSRAPS
                     PPPSPRLRRRTPVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAA
                     TVPGTRTQGSPQEAGPSWDCQGAPGPGSGPELSELEGGAGCPAGEPKGPTRRSRELSS
                     GASPRLQPEPPPGTSAQHRKLTLAQLYRIRTTLLLNSTLTASEV"
     misc_feature    424..648
                     /gene="PLEKHG5"
                     /note="Ras-binding domain (RBD) found in pleckstrin
                     homology (PH) and RhoGEF domain containing G5 (PLEKHG5)
                     and similar proteins; Region: RBD_PLEKHG5; cd17068"
                     /db_xref="CDD:340588"
     misc_feature    order(442..444,532..534)
                     /gene="PLEKHG5"
                     /note="key conserved lysines; other site"
                     /db_xref="CDD:340588"
     misc_feature    1225..1788
                     /gene="PLEKHG5"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(1234..1236,1246..1248,1555..1557,1639..1644,
                     1651..1656,1660..1665,1672..1677,1684..1689,1696..1698,
                     1771..1773,1783..1785)
                     /gene="PLEKHG5"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1954..2244
                     /gene="PLEKHG5"
                     /note="Pleckstrin homology domain-containing family G
                     member 5 and 6 pleckstrin homology (PH) domain; Region:
                     PH_PLEKHG5_G6; cd13244"
                     /db_xref="CDD:270064"
ORIGIN      
        1 atggggacgg gacccggcgt ctccgggcgc cgcgcggcct ccaggccgag ccccgggctg
       61 ccctcccggg actccgagcc cggctgggcg gggggtcgcg gccgccacgg ggaagaccag
      121 atatgccacc acgccgactg ccagcagctg caccgccggg gccccctcag cctctgcgag
      181 gcctgtgaca gcaagttcca cggtgccatg cattatgatg ggcacgtccg cttcgacctg
      241 cccccccaag gctctgtcct ggctcggaat gtgtccaccc ggtcatgccc cccgcgcacc
      301 agccctgcag tggacataga ggaggaggaa gagagctctg tggatggcaa gggggaccgg
      361 aagagcacag gcctgaagct ctccaagaag aaagcctgga ggagacacac agatgaccca
      421 agcaaggagt gtttcacgct gaaatttgac ctgaacgtgg atattgagac agagatcgta
      481 ccagccatga agaagaagtc gctgggggag gtgctgctgc cagtatttga aaggaagggc
      541 attgcgctgg gcaaagtgga tatctacctg gaccagtcca acacgcccct gtccctcacc
      601 tttgaggcct acaggttcgg gggacactac ctgcgggtca aagccaagcc aggggacgag
      661 gggaaggtgg agcagggggt gaaggactcc aagtccctga gtctgccaat cctgcggcca
      721 gccggggccg ggccccccac ccaggagcgt gtggacccgc agagccgccg ggagagcctg
      781 gacatcctgg cccctggccg ccgacgcaag aacatgtcgg agttcctggg ggaggcgagc
      841 atccctgggc aggagccccc agcgccctcc agctgctctc tgcccagcgg cagcagtagc
      901 ggcagcagca gcagtggcgg cagtgacagc tggaagaacc gggcggccag tcgcttcagc
      961 ggcttcttca gctcaggccc cagcaccagc gccttcggcc gggaggtggc caagctggag
     1021 cagctggaga gcaagctgca cgcctacagc ctcttcgggc tgcccaggct gccccggagg
     1081 ctgtgctttg accatgactc atgggaggag gaaggtgacg aagaggagta cgaggatgac
     1141 gcctgcctgc ggctggagga cagctggcga gagctcatcg atggccacga gaagctgacc
     1201 cggcggcagt gccaccagca ggaggcagtg tgggagctcc tgcacacaga ggcctcctac
     1261 attaagaaac tgagggtgat caccaacctg ttcctgtgct gcctcctgaa tctgcaagag
     1321 tcagggctgc tgtgtgaggt ggaggcggag cgcctgttca gcaacgtccc ggagatcgcg
     1381 cggctgcacc gcgggctgtg gggcagcgtg atggcgccgg tgctggagaa ggcgcggcgc
     1441 acgcgggcgc tgctgcagcc cggggatttc ctcaaaggct ttaagatgtt cggctccctc
     1501 ttcaagccct acatccgata ctgcatggag gaggagggct gcatggagta catgcggggc
     1561 ctactacgcg acaacgacct cttccgggcc tacgtcacgt gggccgagaa gcaccagcag
     1621 tgccagcggc tgaagctgag cgacatgctg gccaagcccc accagcggct caccaagtac
     1681 ccgctgctgc tcaagtcggt gctaaggaag accgacgagc cgcgcgccaa ggaggccgtc
     1741 gtcaccatga tcggctcggt ggagcgcttc atccaccacg tgaacgcgtg catgcggcag
     1801 cgacaggaga ggcagcggct ggcggccgtg gtgagccgca tcgacgccta cgaggtggtg
     1861 gagggcagca acgacgaggt ggacaagctc ctgaaggaat ttctacatct ggacctgaca
     1921 gcaccaatcc ctggcgcctc ccctgaggag acacgccagc tgctgctgga agggagcctg
     1981 aggatgaagg aggggaagga cagcaagatg gacgtgtact gcttcctctt caccgacctg
     2041 ctcttggtga ccaaggcagt gaagaaggca gagaggacca aggtgatcag gccaccactg
     2101 ctggtggaaa agatcgtgtg ccgggagctt cgggaccctg ggtccttcct tctcatctac
     2161 ctgaacgagt tccacagtgc tgtgggggcc tacacgttcc aggccagcgg ccaggctttg
     2221 tgccgtggct gggtggacgc catctacgat gcccagagcc agcttcagca gctgcgtgtg
     2281 caggagcacc caggcagcca gcagcacctg cagagcctgg aagaggagga ggacgggcag
     2341 gaggacgagg acgaggaagg aggggagagc agcgcgtcgg ctgccagttc ccctaccgcc
     2401 ctgcgcaaaa gcagcagcag cctcgactcg cagcgctgtg tctcggatgg ctccacggag
     2461 accctggccg tggtggtggt ggagcctggg gggatgctgt cctctcccga gttcgagggc
     2521 ggccccttca gctcccagtc agacaagacc tctctcggca ccactgcctc gtctgttacg
     2581 cccaccagcg agctgctgcc cctgggcccg gtggatggcc gctcctgctc tatagactcc
     2641 gcctacggca ccctctcccc gacctccctg caagaattta tggccccggc ccctatggtg
     2701 gagccagcac tccggccccc agagtcatcg cgagccccgt cacccccacc ctcgccccgc
     2761 ctccgccgac gcactcctgt ccagctgctg ccctgtctgc cccacctgct caagtccaaa
     2821 tctgaggcca gtctcctcca gctgctgtcg ggggccacca cccgtggagc acccccagcc
     2881 cctagccgca gcctgtcgga actctgcttg gctgctaccg tccctggcac caggactcag
     2941 ggctcccctc aggaagctgg gcccagctgg gattgccagg gggcaccagg ccctggcagt
     3001 ggccccgagc tgtcagagct ggagggtgga gccggctgcc cagctgggga gcccaaagga
     3061 cccaccagga ggagcagaga gctgtcctcg ggggcctcgc ccaggctcca gcctgagccc
     3121 cccccaggga cctctgccca gcacaggaag ctgacgttgg cccagctcta ccgaatcagg
     3181 accaccctgc tgcttaactc caccctcact gcctcggagg tctgagcaga gggaggctct
     3241 caggggtgcc actgaccaag ggacagcaga cagcacgcct ccaggggtgt gccggcccct
     3301 gctccagctg ctgccttatg tgtgccccag ccagagtgct gggcaggacc cctgccaccg
     3361 cccccagggc ccaatttgca ctttgccaga ctggctggaa gtggaggagg gctcagcaga
     3421 ggcccaggcc caggctgcag ggccctgtta cagccaccac tgtcactaac cagcctgcgc
     3481 ctccgccccc cagcctaggc aaggtccctt gcccaatacc cccggagtca ccagctccaa
     3541 gcctctgggc tgggctccgg ggctgggatc ctaggcagcc cttcccacct ccaccctcat
     3601 ctggccccaa atgggacggt tcccctgccc tcgcctccct ccctccctcc ctcccacact
     3661 cactcccacc cacccagcct ccctcccacc tacccaccca cccagacctt gggttgggct
     3721 ctgtgtaaag ttgcatattt attgagcttt tgattctttt ataaagactt gtatatactc
     3781 ca
//
LOCUS       XM_032649240            4031 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G5 (PLEKHG5), transcript variant X2, mRNA.
ACCESSION   XM_032649240
VERSION     XM_032649240.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4031
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4031
                     /gene="PLEKHG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762355"
     CDS             1..3219
                     /gene="PLEKHG5"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 5 isoform X2"
                     /protein_id="XP_032505131.1"
                     /db_xref="GeneID:116762355"
                     /translation="MGTGPGVSGRRAASRPSPGLPSRDSEPGWAGGRGRHGEDQICHH
                     ADCQQLHRRGPLSLCEACDSKFHGAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSP
                     AVDIEEEEESSVDGKGDRKSTGLKLSKKKAWRRHTDDPSKECFTLKFDLNVDIETEIV
                     PAMKKKSLGEVLLPVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAKPG
                     DEGKVEQGVKDSKSLSLPILRPAGAGPPTQERVDPQSRRESLDILAPGRRRKNMSEFL
                     GEASIPGQEPPAPSSCSLPSGSSSGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGR
                     EVAKLEQLESKLHAYSLFGLPRLPRRLCFDHDSWEEEGDEEEYEDDACLRLEDSWREL
                     IDGHEKLTRRQCHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEAE
                     RLFSNVPEIARLHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYC
                     MEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKS
                     VLRKTDEPRAKEAVVTMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVEGSN
                     DEVDKLLKEFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLL
                     VTKAVKKAERTKVIRPPLLVEKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQAL
                     CRGWVDAIYDAQSQLQQLRVQEHPGSQQHLQSLEEEEDGQEDEDEEGGESSASAASSP
                     TALRKSSSSLDSQRCVSDGSTETLAVVVVEPGGMLSSPEFEGGPFSSQSDKTSLGTTA
                     SSVTPTSELLPLGPVDGRSCSIDSAYGTLSPTSLQEFMAPAPMVEPALRPPESSRAPS
                     PPPSPRLRRRTPVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAA
                     TVPGTRTQGSPQEAGPSWDCQGAPGPGSGPELSELEGGAGCPAGEPKGPTRRSRELSS
                     GASPRLQPEPPPGTSAQHRKLTLAQLYRIRTTLLLNSTLTAS"
     misc_feature    424..648
                     /gene="PLEKHG5"
                     /note="Ras-binding domain (RBD) found in pleckstrin
                     homology (PH) and RhoGEF domain containing G5 (PLEKHG5)
                     and similar proteins; Region: RBD_PLEKHG5; cd17068"
                     /db_xref="CDD:340588"
     misc_feature    order(442..444,532..534)
                     /gene="PLEKHG5"
                     /note="key conserved lysines; other site"
                     /db_xref="CDD:340588"
     misc_feature    1225..1788
                     /gene="PLEKHG5"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(1234..1236,1246..1248,1555..1557,1639..1644,
                     1651..1656,1660..1665,1672..1677,1684..1689,1696..1698,
                     1771..1773,1783..1785)
                     /gene="PLEKHG5"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1954..2244
                     /gene="PLEKHG5"
                     /note="Pleckstrin homology domain-containing family G
                     member 5 and 6 pleckstrin homology (PH) domain; Region:
                     PH_PLEKHG5_G6; cd13244"
                     /db_xref="CDD:270064"
ORIGIN      
        1 atggggacgg gacccggcgt ctccgggcgc cgcgcggcct ccaggccgag ccccgggctg
       61 ccctcccggg actccgagcc cggctgggcg gggggtcgcg gccgccacgg ggaagaccag
      121 atatgccacc acgccgactg ccagcagctg caccgccggg gccccctcag cctctgcgag
      181 gcctgtgaca gcaagttcca cggtgccatg cattatgatg ggcacgtccg cttcgacctg
      241 cccccccaag gctctgtcct ggctcggaat gtgtccaccc ggtcatgccc cccgcgcacc
      301 agccctgcag tggacataga ggaggaggaa gagagctctg tggatggcaa gggggaccgg
      361 aagagcacag gcctgaagct ctccaagaag aaagcctgga ggagacacac agatgaccca
      421 agcaaggagt gtttcacgct gaaatttgac ctgaacgtgg atattgagac agagatcgta
      481 ccagccatga agaagaagtc gctgggggag gtgctgctgc cagtatttga aaggaagggc
      541 attgcgctgg gcaaagtgga tatctacctg gaccagtcca acacgcccct gtccctcacc
      601 tttgaggcct acaggttcgg gggacactac ctgcgggtca aagccaagcc aggggacgag
      661 gggaaggtgg agcagggggt gaaggactcc aagtccctga gtctgccaat cctgcggcca
      721 gccggggccg ggccccccac ccaggagcgt gtggacccgc agagccgccg ggagagcctg
      781 gacatcctgg cccctggccg ccgacgcaag aacatgtcgg agttcctggg ggaggcgagc
      841 atccctgggc aggagccccc agcgccctcc agctgctctc tgcccagcgg cagcagtagc
      901 ggcagcagca gcagtggcgg cagtgacagc tggaagaacc gggcggccag tcgcttcagc
      961 ggcttcttca gctcaggccc cagcaccagc gccttcggcc gggaggtggc caagctggag
     1021 cagctggaga gcaagctgca cgcctacagc ctcttcgggc tgcccaggct gccccggagg
     1081 ctgtgctttg accatgactc atgggaggag gaaggtgacg aagaggagta cgaggatgac
     1141 gcctgcctgc ggctggagga cagctggcga gagctcatcg atggccacga gaagctgacc
     1201 cggcggcagt gccaccagca ggaggcagtg tgggagctcc tgcacacaga ggcctcctac
     1261 attaagaaac tgagggtgat caccaacctg ttcctgtgct gcctcctgaa tctgcaagag
     1321 tcagggctgc tgtgtgaggt ggaggcggag cgcctgttca gcaacgtccc ggagatcgcg
     1381 cggctgcacc gcgggctgtg gggcagcgtg atggcgccgg tgctggagaa ggcgcggcgc
     1441 acgcgggcgc tgctgcagcc cggggatttc ctcaaaggct ttaagatgtt cggctccctc
     1501 ttcaagccct acatccgata ctgcatggag gaggagggct gcatggagta catgcggggc
     1561 ctactacgcg acaacgacct cttccgggcc tacgtcacgt gggccgagaa gcaccagcag
     1621 tgccagcggc tgaagctgag cgacatgctg gccaagcccc accagcggct caccaagtac
     1681 ccgctgctgc tcaagtcggt gctaaggaag accgacgagc cgcgcgccaa ggaggccgtc
     1741 gtcaccatga tcggctcggt ggagcgcttc atccaccacg tgaacgcgtg catgcggcag
     1801 cgacaggaga ggcagcggct ggcggccgtg gtgagccgca tcgacgccta cgaggtggtg
     1861 gagggcagca acgacgaggt ggacaagctc ctgaaggaat ttctacatct ggacctgaca
     1921 gcaccaatcc ctggcgcctc ccctgaggag acacgccagc tgctgctgga agggagcctg
     1981 aggatgaagg aggggaagga cagcaagatg gacgtgtact gcttcctctt caccgacctg
     2041 ctcttggtga ccaaggcagt gaagaaggca gagaggacca aggtgatcag gccaccactg
     2101 ctggtggaaa agatcgtgtg ccgggagctt cgggaccctg ggtccttcct tctcatctac
     2161 ctgaacgagt tccacagtgc tgtgggggcc tacacgttcc aggccagcgg ccaggctttg
     2221 tgccgtggct gggtggacgc catctacgat gcccagagcc agcttcagca gctgcgtgtg
     2281 caggagcacc caggcagcca gcagcacctg cagagcctgg aagaggagga ggacgggcag
     2341 gaggacgagg acgaggaagg aggggagagc agcgcgtcgg ctgccagttc ccctaccgcc
     2401 ctgcgcaaaa gcagcagcag cctcgactcg cagcgctgtg tctcggatgg ctccacggag
     2461 accctggccg tggtggtggt ggagcctggg gggatgctgt cctctcccga gttcgagggc
     2521 ggccccttca gctcccagtc agacaagacc tctctcggca ccactgcctc gtctgttacg
     2581 cccaccagcg agctgctgcc cctgggcccg gtggatggcc gctcctgctc tatagactcc
     2641 gcctacggca ccctctcccc gacctccctg caagaattta tggccccggc ccctatggtg
     2701 gagccagcac tccggccccc agagtcatcg cgagccccgt cacccccacc ctcgccccgc
     2761 ctccgccgac gcactcctgt ccagctgctg ccctgtctgc cccacctgct caagtccaaa
     2821 tctgaggcca gtctcctcca gctgctgtcg ggggccacca cccgtggagc acccccagcc
     2881 cctagccgca gcctgtcgga actctgcttg gctgctaccg tccctggcac caggactcag
     2941 ggctcccctc aggaagctgg gcccagctgg gattgccagg gggcaccagg ccctggcagt
     3001 ggccccgagc tgtcagagct ggagggtgga gccggctgcc cagctgggga gcccaaagga
     3061 cccaccagga ggagcagaga gctgtcctcg ggggcctcgc ccaggctcca gcctgagccc
     3121 cccccaggga cctctgccca gcacaggaag ctgacgttgg cccagctcta ccgaatcagg
     3181 accaccctgc tgcttaactc caccctcact gcctcgtgag tggcctggcc tgggacaggt
     3241 ggcccagtgt gctgggggca ctgtcatggc ggggagcaga tggcatttgg ggacgggtgt
     3301 gggagaggga gcctgagacc agcctcagca cctggtgagg atgaaacagt gggcagtggt
     3361 gaagaagagg cctgaggatt ccggtcggga ggagagggtg gttggagccc ctccaaatgc
     3421 cttcagccaa ggaaggacca tctctcccct cctctccact gcagggaggt ctgagcagag
     3481 ggaggctctc aggggtgcca ctgaccaagg gacagcagac agcacgcctc caggggtgtg
     3541 ccggcccctg ctccagctgc tgccttatgt gtgccccagc cagagtgctg ggcaggaccc
     3601 ctgccaccgc ccccagggcc caatttgcac tttgccagac tggctggaag tggaggaggg
     3661 ctcagcagag gcccaggccc aggctgcagg gccctgttac agccaccact gtcactaacc
     3721 agcctgcgcc tccgcccccc agcctaggca aggtcccttg cccaataccc ccggagtcac
     3781 cagctccaag cctctgggct gggctccggg gctgggatcc taggcagccc ttcccacctc
     3841 caccctcatc tggccccaaa tgggacggtt cccctgccct cgcctccctc cctccctccc
     3901 tcccacactc actcccaccc acccagcctc cctcccacct acccacccac ccagaccttg
     3961 ggttgggctc tgtgtaaagt tgcatattta ttgagctttt gattctttta taaagacttg
     4021 tatatactcc a
//
LOCUS       XM_032649248            3893 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G5 (PLEKHG5), transcript variant X3, mRNA.
ACCESSION   XM_032649248
VERSION     XM_032649248.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3893
                     /gene="PLEKHG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762355"
     CDS             151..3336
                     /gene="PLEKHG5"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 5 isoform X3"
                     /protein_id="XP_032505139.1"
                     /db_xref="GeneID:116762355"
                     /translation="MEDRSLAEEKGLCCQNPDCMDKGRAAKICHHADCQQLHRRGPLS
                     LCEACDSKFHGAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAVDIEEEEESSVD
                     GKGDRKSTGLKLSKKKAWRRHTDDPSKECFTLKFDLNVDIETEIVPAMKKKSLGEVLL
                     PVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAKPGDEGKVEQGVKDSK
                     SLSLPILRPAGAGPPTQERVDPQSRRESLDILAPGRRRKNMSEFLGEASIPGQEPPAP
                     SSCSLPSGSSSGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVAKLEQLESKLH
                     AYSLFGLPRLPRRLCFDHDSWEEEGDEEEYEDDACLRLEDSWRELIDGHEKLTRRQCH
                     QQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEAERLFSNVPEIARLH
                     RGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGL
                     LRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEA
                     VVTMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLKEFLHL
                     DLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKV
                     IRPPLLVEKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDAIYDAQS
                     QLQQLRVQEHPGSQQHLQSLEEEEDGQEDEDEEGGESSASAASSPTALRKSSSSLDSQ
                     RCVSDGSTETLAVVVVEPGGMLSSPEFEGGPFSSQSDKTSLGTTASSVTPTSELLPLG
                     PVDGRSCSIDSAYGTLSPTSLQEFMAPAPMVEPALRPPESSRAPSPPPSPRLRRRTPV
                     QLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGTRTQGSPQE
                     AGPSWDCQGAPGPGSGPELSELEGGAGCPAGEPKGPTRRSRELSSGASPRLQPEPPPG
                     TSAQHRKLTLAQLYRIRTTLLLNSTLTASEV"
     misc_feature    535..759
                     /gene="PLEKHG5"
                     /note="Ras-binding domain (RBD) found in pleckstrin
                     homology (PH) and RhoGEF domain containing G5 (PLEKHG5)
                     and similar proteins; Region: RBD_PLEKHG5; cd17068"
                     /db_xref="CDD:340588"
     misc_feature    order(553..555,643..645)
                     /gene="PLEKHG5"
                     /note="key conserved lysines; other site"
                     /db_xref="CDD:340588"
     misc_feature    1336..1899
                     /gene="PLEKHG5"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(1345..1347,1357..1359,1666..1668,1750..1755,
                     1762..1767,1771..1776,1783..1788,1795..1800,1807..1809,
                     1882..1884,1894..1896)
                     /gene="PLEKHG5"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2065..2355
                     /gene="PLEKHG5"
                     /note="Pleckstrin homology domain-containing family G
                     member 5 and 6 pleckstrin homology (PH) domain; Region:
                     PH_PLEKHG5_G6; cd13244"
                     /db_xref="CDD:270064"
ORIGIN      
        1 ctagccgcag agggtcccgc ggccgcggcg ctccggcctc tcccccggcg ctcggccggc
       61 gtccgcccca cgccgccgtt gcgctcgccc ccggccggcc cgcggcgccc cccgcaccgc
      121 ccgcgttccc ggcctcccgg cgcctcttcc atggaagacc ggagcctggc tgaagagaag
      181 ggactgtgct gtcagaaccc cgactgcatg gacaaggggc gggcggctaa gatatgccac
      241 cacgccgact gccagcagct gcaccgccgg ggccccctca gcctctgcga ggcctgtgac
      301 agcaagttcc acggtgccat gcattatgat gggcacgtcc gcttcgacct gcccccccaa
      361 ggctctgtcc tggctcggaa tgtgtccacc cggtcatgcc ccccgcgcac cagccctgca
      421 gtggacatag aggaggagga agagagctct gtggatggca agggggaccg gaagagcaca
      481 ggcctgaagc tctccaagaa gaaagcctgg aggagacaca cagatgaccc aagcaaggag
      541 tgtttcacgc tgaaatttga cctgaacgtg gatattgaga cagagatcgt accagccatg
      601 aagaagaagt cgctggggga ggtgctgctg ccagtatttg aaaggaaggg cattgcgctg
      661 ggcaaagtgg atatctacct ggaccagtcc aacacgcccc tgtccctcac ctttgaggcc
      721 tacaggttcg ggggacacta cctgcgggtc aaagccaagc caggggacga ggggaaggtg
      781 gagcaggggg tgaaggactc caagtccctg agtctgccaa tcctgcggcc agccggggcc
      841 gggcccccca cccaggagcg tgtggacccg cagagccgcc gggagagcct ggacatcctg
      901 gcccctggcc gccgacgcaa gaacatgtcg gagttcctgg gggaggcgag catccctggg
      961 caggagcccc cagcgccctc cagctgctct ctgcccagcg gcagcagtag cggcagcagc
     1021 agcagtggcg gcagtgacag ctggaagaac cgggcggcca gtcgcttcag cggcttcttc
     1081 agctcaggcc ccagcaccag cgccttcggc cgggaggtgg ccaagctgga gcagctggag
     1141 agcaagctgc acgcctacag cctcttcggg ctgcccaggc tgccccggag gctgtgcttt
     1201 gaccatgact catgggagga ggaaggtgac gaagaggagt acgaggatga cgcctgcctg
     1261 cggctggagg acagctggcg agagctcatc gatggccacg agaagctgac ccggcggcag
     1321 tgccaccagc aggaggcagt gtgggagctc ctgcacacag aggcctccta cattaagaaa
     1381 ctgagggtga tcaccaacct gttcctgtgc tgcctcctga atctgcaaga gtcagggctg
     1441 ctgtgtgagg tggaggcgga gcgcctgttc agcaacgtcc cggagatcgc gcggctgcac
     1501 cgcgggctgt ggggcagcgt gatggcgccg gtgctggaga aggcgcggcg cacgcgggcg
     1561 ctgctgcagc ccggggattt cctcaaaggc tttaagatgt tcggctccct cttcaagccc
     1621 tacatccgat actgcatgga ggaggagggc tgcatggagt acatgcgggg cctactacgc
     1681 gacaacgacc tcttccgggc ctacgtcacg tgggccgaga agcaccagca gtgccagcgg
     1741 ctgaagctga gcgacatgct ggccaagccc caccagcggc tcaccaagta cccgctgctg
     1801 ctcaagtcgg tgctaaggaa gaccgacgag ccgcgcgcca aggaggccgt cgtcaccatg
     1861 atcggctcgg tggagcgctt catccaccac gtgaacgcgt gcatgcggca gcgacaggag
     1921 aggcagcggc tggcggccgt ggtgagccgc atcgacgcct acgaggtggt ggagggcagc
     1981 aacgacgagg tggacaagct cctgaaggaa tttctacatc tggacctgac agcaccaatc
     2041 cctggcgcct cccctgagga gacacgccag ctgctgctgg aagggagcct gaggatgaag
     2101 gaggggaagg acagcaagat ggacgtgtac tgcttcctct tcaccgacct gctcttggtg
     2161 accaaggcag tgaagaaggc agagaggacc aaggtgatca ggccaccact gctggtggaa
     2221 aagatcgtgt gccgggagct tcgggaccct gggtccttcc ttctcatcta cctgaacgag
     2281 ttccacagtg ctgtgggggc ctacacgttc caggccagcg gccaggcttt gtgccgtggc
     2341 tgggtggacg ccatctacga tgcccagagc cagcttcagc agctgcgtgt gcaggagcac
     2401 ccaggcagcc agcagcacct gcagagcctg gaagaggagg aggacgggca ggaggacgag
     2461 gacgaggaag gaggggagag cagcgcgtcg gctgccagtt cccctaccgc cctgcgcaaa
     2521 agcagcagca gcctcgactc gcagcgctgt gtctcggatg gctccacgga gaccctggcc
     2581 gtggtggtgg tggagcctgg ggggatgctg tcctctcccg agttcgaggg cggccccttc
     2641 agctcccagt cagacaagac ctctctcggc accactgcct cgtctgttac gcccaccagc
     2701 gagctgctgc ccctgggccc ggtggatggc cgctcctgct ctatagactc cgcctacggc
     2761 accctctccc cgacctccct gcaagaattt atggccccgg cccctatggt ggagccagca
     2821 ctccggcccc cagagtcatc gcgagccccg tcacccccac cctcgccccg cctccgccga
     2881 cgcactcctg tccagctgct gccctgtctg ccccacctgc tcaagtccaa atctgaggcc
     2941 agtctcctcc agctgctgtc gggggccacc acccgtggag cacccccagc ccctagccgc
     3001 agcctgtcgg aactctgctt ggctgctacc gtccctggca ccaggactca gggctcccct
     3061 caggaagctg ggcccagctg ggattgccag ggggcaccag gccctggcag tggccccgag
     3121 ctgtcagagc tggagggtgg agccggctgc ccagctgggg agcccaaagg acccaccagg
     3181 aggagcagag agctgtcctc gggggcctcg cccaggctcc agcctgagcc ccccccaggg
     3241 acctctgccc agcacaggaa gctgacgttg gcccagctct accgaatcag gaccaccctg
     3301 ctgcttaact ccaccctcac tgcctcggag gtctgagcag agggaggctc tcaggggtgc
     3361 cactgaccaa gggacagcag acagcacgcc tccaggggtg tgccggcccc tgctccagct
     3421 gctgccttat gtgtgcccca gccagagtgc tgggcaggac ccctgccacc gcccccaggg
     3481 cccaatttgc actttgccag actggctgga agtggaggag ggctcagcag aggcccaggc
     3541 ccaggctgca gggccctgtt acagccacca ctgtcactaa ccagcctgcg cctccgcccc
     3601 ccagcctagg caaggtccct tgcccaatac ccccggagtc accagctcca agcctctggg
     3661 ctgggctccg gggctgggat cctaggcagc ccttcccacc tccaccctca tctggcccca
     3721 aatgggacgg ttcccctgcc ctcgcctccc tccctccctc cctcccacac tcactcccac
     3781 ccacccagcc tccctcccac ctacccaccc acccagacct tgggttgggc tctgtgtaaa
     3841 gttgcatatt tattgagctt ttgattcttt tataaagact tgtatatact cca
//
LOCUS       XM_032649256            4970 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G5 (PLEKHG5), transcript variant X4, mRNA.
ACCESSION   XM_032649256
VERSION     XM_032649256.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4970
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4970
                     /gene="PLEKHG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762355"
     CDS             1231..4413
                     /gene="PLEKHG5"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 5 isoform X4"
                     /protein_id="XP_032505147.1"
                     /db_xref="GeneID:116762355"
                     /translation="MGEQDRRPLRSPASAGDGQPLRGFEEICHHADCQQLHRRGPLSL
                     CEACDSKFHGAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAVDIEEEEESSVDG
                     KGDRKSTGLKLSKKKAWRRHTDDPSKECFTLKFDLNVDIETEIVPAMKKKSLGEVLLP
                     VFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAKPGDEGKVEQGVKDSKS
                     LSLPILRPAGAGPPTQERVDPQSRRESLDILAPGRRRKNMSEFLGEASIPGQEPPAPS
                     SCSLPSGSSSGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVAKLEQLESKLHA
                     YSLFGLPRLPRRLCFDHDSWEEEGDEEEYEDDACLRLEDSWRELIDGHEKLTRRQCHQ
                     QEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEAERLFSNVPEIARLHR
                     GLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLL
                     RDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEAV
                     VTMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLKEFLHLD
                     LTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKVI
                     RPPLLVEKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDAIYDAQSQ
                     LQQLRVQEHPGSQQHLQSLEEEEDGQEDEDEEGGESSASAASSPTALRKSSSSLDSQR
                     CVSDGSTETLAVVVVEPGGMLSSPEFEGGPFSSQSDKTSLGTTASSVTPTSELLPLGP
                     VDGRSCSIDSAYGTLSPTSLQEFMAPAPMVEPALRPPESSRAPSPPPSPRLRRRTPVQ
                     LLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGTRTQGSPQEA
                     GPSWDCQGAPGPGSGPELSELEGGAGCPAGEPKGPTRRSRELSSGASPRLQPEPPPGT
                     SAQHRKLTLAQLYRIRTTLLLNSTLTASEV"
     misc_feature    1612..1836
                     /gene="PLEKHG5"
                     /note="Ras-binding domain (RBD) found in pleckstrin
                     homology (PH) and RhoGEF domain containing G5 (PLEKHG5)
                     and similar proteins; Region: RBD_PLEKHG5; cd17068"
                     /db_xref="CDD:340588"
     misc_feature    order(1630..1632,1720..1722)
                     /gene="PLEKHG5"
                     /note="key conserved lysines; other site"
                     /db_xref="CDD:340588"
     misc_feature    2413..2976
                     /gene="PLEKHG5"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(2422..2424,2434..2436,2743..2745,2827..2832,
                     2839..2844,2848..2853,2860..2865,2872..2877,2884..2886,
                     2959..2961,2971..2973)
                     /gene="PLEKHG5"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    3142..3432
                     /gene="PLEKHG5"
                     /note="Pleckstrin homology domain-containing family G
                     member 5 and 6 pleckstrin homology (PH) domain; Region:
                     PH_PLEKHG5_G6; cd13244"
                     /db_xref="CDD:270064"
ORIGIN      
        1 ttccccgacc agggatcgaa cccgtgcccc cggcagtgga agcgcggagt cttaatcact
       61 ggatggccgg gggagtcctc acatttcagc agtagatcga gtgaagatag aaacagctgc
      121 tctgcttaga gtgcccctca ccctggcctc cagccccgag aacacactcg aagacccctc
      181 aagaagggtg tggaagtgtg gggcgcctgg tgctcaggct gccatcggga atatgggcca
      241 taatgcccag ggtccagccc cccagaaacc agacccccct ggagcaagtg gcttctgtag
      301 tgcgcctcct gccagctgtc atttctgtgt ccgtgttccc tttctgtgtg atggaggagt
      361 ggaagggaca caagagccaa aacatcaacc gtaaagctat tcaacgtaac tgatttcctc
      421 ttgtctcctt agccccccag gctggcccga agccagcctc ccccactcct cgctcccttc
      481 tccactaccc aagagacggt gtgaatgtgg tgaaaacgtg ggctctgaag ctacataccc
      541 tgactccact ggctgtgtga ccttagacaa gttacttaac cactctgagc ctcactttcc
      601 tcatctgtaa agtacagaca atcgtagccc ccaccttctg ggatgaggat tcccccagtg
      661 cagccccagg cacatgagga ccatgttatc aatgatcaga ctttttcagc tccctctttc
      721 ctcctctctt gggccacttt ctctgctgtc taacccatcc tcaccctgtc tgtcatcttg
      781 aaaatctctg atcggactct ctccagccaa gatctccagt gatcctccat cacgctactt
      841 aataattgaa ccagtattta ttgagcggct aggactggcg accaggcagc cagcccgatg
      901 ggccaaaatt gctgtccttg tagtgctggc ggtgtggagg caacaaagtg aagcgcgcgg
      961 actgtccacc agtgggaagc ctgcaggaga gaaaggcggc ggggtggagg aggtgaccgg
     1021 gagtgcagag gaatgaaacc ttagaagggt gagacgagga cttgtgagtg aaggtctgca
     1081 ggaagggagg cggctggttg gttatctcag catctgagga aaagcatttc aggctgggcg
     1141 attagcagaa gcccaggctc agcggtggag catgtccgaa gaagcacatc ggaaggcgag
     1201 aggctggtgg gcgcggtgga cagagccagg atgggagagc aggaccggag gcccctgagg
     1261 tcaccagcct cagcaggaga tgggcagccg ctgcggggtt ttgaggagat atgccaccac
     1321 gccgactgcc agcagctgca ccgccggggc cccctcagcc tctgcgaggc ctgtgacagc
     1381 aagttccacg gtgccatgca ttatgatggg cacgtccgct tcgacctgcc cccccaaggc
     1441 tctgtcctgg ctcggaatgt gtccacccgg tcatgccccc cgcgcaccag ccctgcagtg
     1501 gacatagagg aggaggaaga gagctctgtg gatggcaagg gggaccggaa gagcacaggc
     1561 ctgaagctct ccaagaagaa agcctggagg agacacacag atgacccaag caaggagtgt
     1621 ttcacgctga aatttgacct gaacgtggat attgagacag agatcgtacc agccatgaag
     1681 aagaagtcgc tgggggaggt gctgctgcca gtatttgaaa ggaagggcat tgcgctgggc
     1741 aaagtggata tctacctgga ccagtccaac acgcccctgt ccctcacctt tgaggcctac
     1801 aggttcgggg gacactacct gcgggtcaaa gccaagccag gggacgaggg gaaggtggag
     1861 cagggggtga aggactccaa gtccctgagt ctgccaatcc tgcggccagc cggggccggg
     1921 ccccccaccc aggagcgtgt ggacccgcag agccgccggg agagcctgga catcctggcc
     1981 cctggccgcc gacgcaagaa catgtcggag ttcctggggg aggcgagcat ccctgggcag
     2041 gagcccccag cgccctccag ctgctctctg cccagcggca gcagtagcgg cagcagcagc
     2101 agtggcggca gtgacagctg gaagaaccgg gcggccagtc gcttcagcgg cttcttcagc
     2161 tcaggcccca gcaccagcgc cttcggccgg gaggtggcca agctggagca gctggagagc
     2221 aagctgcacg cctacagcct cttcgggctg cccaggctgc cccggaggct gtgctttgac
     2281 catgactcat gggaggagga aggtgacgaa gaggagtacg aggatgacgc ctgcctgcgg
     2341 ctggaggaca gctggcgaga gctcatcgat ggccacgaga agctgacccg gcggcagtgc
     2401 caccagcagg aggcagtgtg ggagctcctg cacacagagg cctcctacat taagaaactg
     2461 agggtgatca ccaacctgtt cctgtgctgc ctcctgaatc tgcaagagtc agggctgctg
     2521 tgtgaggtgg aggcggagcg cctgttcagc aacgtcccgg agatcgcgcg gctgcaccgc
     2581 gggctgtggg gcagcgtgat ggcgccggtg ctggagaagg cgcggcgcac gcgggcgctg
     2641 ctgcagcccg gggatttcct caaaggcttt aagatgttcg gctccctctt caagccctac
     2701 atccgatact gcatggagga ggagggctgc atggagtaca tgcggggcct actacgcgac
     2761 aacgacctct tccgggccta cgtcacgtgg gccgagaagc accagcagtg ccagcggctg
     2821 aagctgagcg acatgctggc caagccccac cagcggctca ccaagtaccc gctgctgctc
     2881 aagtcggtgc taaggaagac cgacgagccg cgcgccaagg aggccgtcgt caccatgatc
     2941 ggctcggtgg agcgcttcat ccaccacgtg aacgcgtgca tgcggcagcg acaggagagg
     3001 cagcggctgg cggccgtggt gagccgcatc gacgcctacg aggtggtgga gggcagcaac
     3061 gacgaggtgg acaagctcct gaaggaattt ctacatctgg acctgacagc accaatccct
     3121 ggcgcctccc ctgaggagac acgccagctg ctgctggaag ggagcctgag gatgaaggag
     3181 gggaaggaca gcaagatgga cgtgtactgc ttcctcttca ccgacctgct cttggtgacc
     3241 aaggcagtga agaaggcaga gaggaccaag gtgatcaggc caccactgct ggtggaaaag
     3301 atcgtgtgcc gggagcttcg ggaccctggg tccttccttc tcatctacct gaacgagttc
     3361 cacagtgctg tgggggccta cacgttccag gccagcggcc aggctttgtg ccgtggctgg
     3421 gtggacgcca tctacgatgc ccagagccag cttcagcagc tgcgtgtgca ggagcaccca
     3481 ggcagccagc agcacctgca gagcctggaa gaggaggagg acgggcagga ggacgaggac
     3541 gaggaaggag gggagagcag cgcgtcggct gccagttccc ctaccgccct gcgcaaaagc
     3601 agcagcagcc tcgactcgca gcgctgtgtc tcggatggct ccacggagac cctggccgtg
     3661 gtggtggtgg agcctggggg gatgctgtcc tctcccgagt tcgagggcgg ccccttcagc
     3721 tcccagtcag acaagacctc tctcggcacc actgcctcgt ctgttacgcc caccagcgag
     3781 ctgctgcccc tgggcccggt ggatggccgc tcctgctcta tagactccgc ctacggcacc
     3841 ctctccccga cctccctgca agaatttatg gccccggccc ctatggtgga gccagcactc
     3901 cggcccccag agtcatcgcg agccccgtca cccccaccct cgccccgcct ccgccgacgc
     3961 actcctgtcc agctgctgcc ctgtctgccc cacctgctca agtccaaatc tgaggccagt
     4021 ctcctccagc tgctgtcggg ggccaccacc cgtggagcac ccccagcccc tagccgcagc
     4081 ctgtcggaac tctgcttggc tgctaccgtc cctggcacca ggactcaggg ctcccctcag
     4141 gaagctgggc ccagctggga ttgccagggg gcaccaggcc ctggcagtgg ccccgagctg
     4201 tcagagctgg agggtggagc cggctgccca gctggggagc ccaaaggacc caccaggagg
     4261 agcagagagc tgtcctcggg ggcctcgccc aggctccagc ctgagccccc cccagggacc
     4321 tctgcccagc acaggaagct gacgttggcc cagctctacc gaatcaggac caccctgctg
     4381 cttaactcca ccctcactgc ctcggaggtc tgagcagagg gaggctctca ggggtgccac
     4441 tgaccaaggg acagcagaca gcacgcctcc aggggtgtgc cggcccctgc tccagctgct
     4501 gccttatgtg tgccccagcc agagtgctgg gcaggacccc tgccaccgcc cccagggccc
     4561 aatttgcact ttgccagact ggctggaagt ggaggagggc tcagcagagg cccaggccca
     4621 ggctgcaggg ccctgttaca gccaccactg tcactaacca gcctgcgcct ccgcccccca
     4681 gcctaggcaa ggtcccttgc ccaatacccc cggagtcacc agctccaagc ctctgggctg
     4741 ggctccgggg ctgggatcct aggcagccct tcccacctcc accctcatct ggccccaaat
     4801 gggacggttc ccctgccctc gcctccctcc ctccctccct cccacactca ctcccaccca
     4861 cccagcctcc ctcccaccta cccacccacc cagaccttgg gttgggctct gtgtaaagtt
     4921 gcatatttat tgagcttttg attcttttat aaagacttgt atatactcca
//
LOCUS       XM_032649267            4886 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G5 (PLEKHG5), transcript variant X5, mRNA.
ACCESSION   XM_032649267
VERSION     XM_032649267.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4886
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4886
                     /gene="PLEKHG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762355"
     CDS             1147..4329
                     /gene="PLEKHG5"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 5 isoform X4"
                     /protein_id="XP_032505158.1"
                     /db_xref="GeneID:116762355"
                     /translation="MGEQDRRPLRSPASAGDGQPLRGFEEICHHADCQQLHRRGPLSL
                     CEACDSKFHGAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAVDIEEEEESSVDG
                     KGDRKSTGLKLSKKKAWRRHTDDPSKECFTLKFDLNVDIETEIVPAMKKKSLGEVLLP
                     VFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAKPGDEGKVEQGVKDSKS
                     LSLPILRPAGAGPPTQERVDPQSRRESLDILAPGRRRKNMSEFLGEASIPGQEPPAPS
                     SCSLPSGSSSGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVAKLEQLESKLHA
                     YSLFGLPRLPRRLCFDHDSWEEEGDEEEYEDDACLRLEDSWRELIDGHEKLTRRQCHQ
                     QEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEAERLFSNVPEIARLHR
                     GLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLL
                     RDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEAV
                     VTMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLKEFLHLD
                     LTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKVI
                     RPPLLVEKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDAIYDAQSQ
                     LQQLRVQEHPGSQQHLQSLEEEEDGQEDEDEEGGESSASAASSPTALRKSSSSLDSQR
                     CVSDGSTETLAVVVVEPGGMLSSPEFEGGPFSSQSDKTSLGTTASSVTPTSELLPLGP
                     VDGRSCSIDSAYGTLSPTSLQEFMAPAPMVEPALRPPESSRAPSPPPSPRLRRRTPVQ
                     LLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGTRTQGSPQEA
                     GPSWDCQGAPGPGSGPELSELEGGAGCPAGEPKGPTRRSRELSSGASPRLQPEPPPGT
                     SAQHRKLTLAQLYRIRTTLLLNSTLTASEV"
     misc_feature    1528..1752
                     /gene="PLEKHG5"
                     /note="Ras-binding domain (RBD) found in pleckstrin
                     homology (PH) and RhoGEF domain containing G5 (PLEKHG5)
                     and similar proteins; Region: RBD_PLEKHG5; cd17068"
                     /db_xref="CDD:340588"
     misc_feature    order(1546..1548,1636..1638)
                     /gene="PLEKHG5"
                     /note="key conserved lysines; other site"
                     /db_xref="CDD:340588"
     misc_feature    2329..2892
                     /gene="PLEKHG5"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(2338..2340,2350..2352,2659..2661,2743..2748,
                     2755..2760,2764..2769,2776..2781,2788..2793,2800..2802,
                     2875..2877,2887..2889)
                     /gene="PLEKHG5"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    3058..3348
                     /gene="PLEKHG5"
                     /note="Pleckstrin homology domain-containing family G
                     member 5 and 6 pleckstrin homology (PH) domain; Region:
                     PH_PLEKHG5_G6; cd13244"
                     /db_xref="CDD:270064"
ORIGIN      
        1 ttccccgacc agggatcgaa cccgtgcccc cggcagtgga agcgcggagt cttaatcact
       61 ggatggccgg gggagtcctc acatttcagc agtagatcga gtgaagatag aaacagctgc
      121 tctgcttaga gtgcccctca ccctggcctc cagccccgag aacacactcg aagacccctc
      181 aagaagggtg tggaagtgtg gggcgcctgg tgctcaggct gccatcggga atatgggcca
      241 taatgcccag ggtccagccc cccagaaacc agacccccct ggagcaagtg gcttctgtag
      301 tgcgcctcct gccagctgtc atttctgtgt ccgtgttccc tttctgtgtg atggaggagt
      361 ggaagggaca caagagccaa aacatcaacc gtaaagctat tcaacgtaac tgatttcctc
      421 ttgtctcctt agccccccag gctggcccga agccagcctc ccccactcct cgctcccttc
      481 tccactaccc aagagacggt gtgaatgtgg tgaaaacgtg ggctctgaag ctacataccc
      541 tgactccact ggctgtgtga ccttagacaa gttacttaac cactctgagc ctcactttcc
      601 tcatctgtaa agtacagaca atcgtagccc ccaccttctg ggatgaggat tcccccagtg
      661 cagccccagg cacatgagga ccatgttatc aatgatcaga ctttttcagc tccctctttc
      721 ctcctctctt gggccacttt ctctgctgtc taacccatcc tcaccctgtc tgtcatcttg
      781 aaaatctctg atcggactct ctccagccaa gatctccagt gatcctccat cacgctactt
      841 aataattgaa ccagtattta ttgagcggct aggactggcg accaggcagc cagcccgatg
      901 ggccaaaatt gctgtccttg tagtgctggc ggtgtggagg caacaaagtg aagcgcgcgg
      961 actgtccacc agtgggaagc ctgcaggaga gaaaggcggc ggggtggagg aggtgaccgg
     1021 gagtgcagag gaatgaaacc ttagaagggc tgggcgatta gcagaagccc aggctcagcg
     1081 gtggagcatg tccgaagaag cacatcggaa ggcgagaggc tggtgggcgc ggtggacaga
     1141 gccaggatgg gagagcagga ccggaggccc ctgaggtcac cagcctcagc aggagatggg
     1201 cagccgctgc ggggttttga ggagatatgc caccacgccg actgccagca gctgcaccgc
     1261 cggggccccc tcagcctctg cgaggcctgt gacagcaagt tccacggtgc catgcattat
     1321 gatgggcacg tccgcttcga cctgcccccc caaggctctg tcctggctcg gaatgtgtcc
     1381 acccggtcat gccccccgcg caccagccct gcagtggaca tagaggagga ggaagagagc
     1441 tctgtggatg gcaaggggga ccggaagagc acaggcctga agctctccaa gaagaaagcc
     1501 tggaggagac acacagatga cccaagcaag gagtgtttca cgctgaaatt tgacctgaac
     1561 gtggatattg agacagagat cgtaccagcc atgaagaaga agtcgctggg ggaggtgctg
     1621 ctgccagtat ttgaaaggaa gggcattgcg ctgggcaaag tggatatcta cctggaccag
     1681 tccaacacgc ccctgtccct cacctttgag gcctacaggt tcgggggaca ctacctgcgg
     1741 gtcaaagcca agccagggga cgaggggaag gtggagcagg gggtgaagga ctccaagtcc
     1801 ctgagtctgc caatcctgcg gccagccggg gccgggcccc ccacccagga gcgtgtggac
     1861 ccgcagagcc gccgggagag cctggacatc ctggcccctg gccgccgacg caagaacatg
     1921 tcggagttcc tgggggaggc gagcatccct gggcaggagc ccccagcgcc ctccagctgc
     1981 tctctgccca gcggcagcag tagcggcagc agcagcagtg gcggcagtga cagctggaag
     2041 aaccgggcgg ccagtcgctt cagcggcttc ttcagctcag gccccagcac cagcgccttc
     2101 ggccgggagg tggccaagct ggagcagctg gagagcaagc tgcacgccta cagcctcttc
     2161 gggctgccca ggctgccccg gaggctgtgc tttgaccatg actcatggga ggaggaaggt
     2221 gacgaagagg agtacgagga tgacgcctgc ctgcggctgg aggacagctg gcgagagctc
     2281 atcgatggcc acgagaagct gacccggcgg cagtgccacc agcaggaggc agtgtgggag
     2341 ctcctgcaca cagaggcctc ctacattaag aaactgaggg tgatcaccaa cctgttcctg
     2401 tgctgcctcc tgaatctgca agagtcaggg ctgctgtgtg aggtggaggc ggagcgcctg
     2461 ttcagcaacg tcccggagat cgcgcggctg caccgcgggc tgtggggcag cgtgatggcg
     2521 ccggtgctgg agaaggcgcg gcgcacgcgg gcgctgctgc agcccgggga tttcctcaaa
     2581 ggctttaaga tgttcggctc cctcttcaag ccctacatcc gatactgcat ggaggaggag
     2641 ggctgcatgg agtacatgcg gggcctacta cgcgacaacg acctcttccg ggcctacgtc
     2701 acgtgggccg agaagcacca gcagtgccag cggctgaagc tgagcgacat gctggccaag
     2761 ccccaccagc ggctcaccaa gtacccgctg ctgctcaagt cggtgctaag gaagaccgac
     2821 gagccgcgcg ccaaggaggc cgtcgtcacc atgatcggct cggtggagcg cttcatccac
     2881 cacgtgaacg cgtgcatgcg gcagcgacag gagaggcagc ggctggcggc cgtggtgagc
     2941 cgcatcgacg cctacgaggt ggtggagggc agcaacgacg aggtggacaa gctcctgaag
     3001 gaatttctac atctggacct gacagcacca atccctggcg cctcccctga ggagacacgc
     3061 cagctgctgc tggaagggag cctgaggatg aaggagggga aggacagcaa gatggacgtg
     3121 tactgcttcc tcttcaccga cctgctcttg gtgaccaagg cagtgaagaa ggcagagagg
     3181 accaaggtga tcaggccacc actgctggtg gaaaagatcg tgtgccggga gcttcgggac
     3241 cctgggtcct tccttctcat ctacctgaac gagttccaca gtgctgtggg ggcctacacg
     3301 ttccaggcca gcggccaggc tttgtgccgt ggctgggtgg acgccatcta cgatgcccag
     3361 agccagcttc agcagctgcg tgtgcaggag cacccaggca gccagcagca cctgcagagc
     3421 ctggaagagg aggaggacgg gcaggaggac gaggacgagg aaggagggga gagcagcgcg
     3481 tcggctgcca gttcccctac cgccctgcgc aaaagcagca gcagcctcga ctcgcagcgc
     3541 tgtgtctcgg atggctccac ggagaccctg gccgtggtgg tggtggagcc tggggggatg
     3601 ctgtcctctc ccgagttcga gggcggcccc ttcagctccc agtcagacaa gacctctctc
     3661 ggcaccactg cctcgtctgt tacgcccacc agcgagctgc tgcccctggg cccggtggat
     3721 ggccgctcct gctctataga ctccgcctac ggcaccctct ccccgacctc cctgcaagaa
     3781 tttatggccc cggcccctat ggtggagcca gcactccggc ccccagagtc atcgcgagcc
     3841 ccgtcacccc caccctcgcc ccgcctccgc cgacgcactc ctgtccagct gctgccctgt
     3901 ctgccccacc tgctcaagtc caaatctgag gccagtctcc tccagctgct gtcgggggcc
     3961 accacccgtg gagcaccccc agcccctagc cgcagcctgt cggaactctg cttggctgct
     4021 accgtccctg gcaccaggac tcagggctcc cctcaggaag ctgggcccag ctgggattgc
     4081 cagggggcac caggccctgg cagtggcccc gagctgtcag agctggaggg tggagccggc
     4141 tgcccagctg gggagcccaa aggacccacc aggaggagca gagagctgtc ctcgggggcc
     4201 tcgcccaggc tccagcctga gcccccccca gggacctctg cccagcacag gaagctgacg
     4261 ttggcccagc tctaccgaat caggaccacc ctgctgctta actccaccct cactgcctcg
     4321 gaggtctgag cagagggagg ctctcagggg tgccactgac caagggacag cagacagcac
     4381 gcctccaggg gtgtgccggc ccctgctcca gctgctgcct tatgtgtgcc ccagccagag
     4441 tgctgggcag gacccctgcc accgccccca gggcccaatt tgcactttgc cagactggct
     4501 ggaagtggag gagggctcag cagaggccca ggcccaggct gcagggccct gttacagcca
     4561 ccactgtcac taaccagcct gcgcctccgc cccccagcct aggcaaggtc ccttgcccaa
     4621 tacccccgga gtcaccagct ccaagcctct gggctgggct ccggggctgg gatcctaggc
     4681 agcccttccc acctccaccc tcatctggcc ccaaatggga cggttcccct gccctcgcct
     4741 ccctccctcc ctccctccca cactcactcc cacccaccca gcctccctcc cacctaccca
     4801 cccacccaga ccttgggttg ggctctgtgt aaagttgcat atttattgag cttttgattc
     4861 ttttataaag acttgtatat actcca
//
LOCUS       XM_032649276            3886 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G5 (PLEKHG5), transcript variant X6, mRNA.
ACCESSION   XM_032649276
VERSION     XM_032649276.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3886
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3886
                     /gene="PLEKHG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762355"
     CDS             312..3329
                     /gene="PLEKHG5"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 5 isoform X5"
                     /protein_id="XP_032505167.1"
                     /db_xref="GeneID:116762355"
                     /translation="MHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAVDIEEEEESS
                     VDGKGDRKSTGLKLSKKKAWRRHTDDPSKECFTLKFDLNVDIETEIVPAMKKKSLGEV
                     LLPVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAKPGDEGKVEQGVKD
                     SKSLSLPILRPAGAGPPTQERVDPQSRRESLDILAPGRRRKNMSEFLGEASIPGQEPP
                     APSSCSLPSGSSSGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVAKLEQLESK
                     LHAYSLFGLPRLPRRLCFDHDSWEEEGDEEEYEDDACLRLEDSWRELIDGHEKLTRRQ
                     CHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEAERLFSNVPEIAR
                     LHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMR
                     GLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAK
                     EAVVTMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLKEFL
                     HLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERT
                     KVIRPPLLVEKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDAIYDA
                     QSQLQQLRVQEHPGSQQHLQSLEEEEDGQEDEDEEGGESSASAASSPTALRKSSSSLD
                     SQRCVSDGSTETLAVVVVEPGGMLSSPEFEGGPFSSQSDKTSLGTTASSVTPTSELLP
                     LGPVDGRSCSIDSAYGTLSPTSLQEFMAPAPMVEPALRPPESSRAPSPPPSPRLRRRT
                     PVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGTRTQGSP
                     QEAGPSWDCQGAPGPGSGPELSELEGGAGCPAGEPKGPTRRSRELSSGASPRLQPEPP
                     PGTSAQHRKLTLAQLYRIRTTLLLNSTLTASEV"
     misc_feature    528..752
                     /gene="PLEKHG5"
                     /note="Ras-binding domain (RBD) found in pleckstrin
                     homology (PH) and RhoGEF domain containing G5 (PLEKHG5)
                     and similar proteins; Region: RBD_PLEKHG5; cd17068"
                     /db_xref="CDD:340588"
     misc_feature    order(546..548,636..638)
                     /gene="PLEKHG5"
                     /note="key conserved lysines; other site"
                     /db_xref="CDD:340588"
     misc_feature    1329..1892
                     /gene="PLEKHG5"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(1338..1340,1350..1352,1659..1661,1743..1748,
                     1755..1760,1764..1769,1776..1781,1788..1793,1800..1802,
                     1875..1877,1887..1889)
                     /gene="PLEKHG5"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2058..2348
                     /gene="PLEKHG5"
                     /note="Pleckstrin homology domain-containing family G
                     member 5 and 6 pleckstrin homology (PH) domain; Region:
                     PH_PLEKHG5_G6; cd13244"
                     /db_xref="CDD:270064"
ORIGIN      
        1 ggccggcccg cggcgccccc cgcaccgccc gcgttcccgg cctcccggcg cctcttccat
       61 ggaagaccgg agcctggctg aagagaaggg actgtgctgt cagaaccccg actgcatgga
      121 caaggggcgg gcggctaaga tgaagatacc aaggttcaga gaggtcctgt gacttggagg
      181 aggccccaca gctcaggaga gaccgagcaa gggtttgaac ccagatatgc caccacgccg
      241 actgccagca gctgcaccgc cggggccccc tcagcctctg cgaggcctgt gacagcaagt
      301 tccacggtgc catgcattat gatgggcacg tccgcttcga cctgcccccc caaggctctg
      361 tcctggctcg gaatgtgtcc acccggtcat gccccccgcg caccagccct gcagtggaca
      421 tagaggagga ggaagagagc tctgtggatg gcaaggggga ccggaagagc acaggcctga
      481 agctctccaa gaagaaagcc tggaggagac acacagatga cccaagcaag gagtgtttca
      541 cgctgaaatt tgacctgaac gtggatattg agacagagat cgtaccagcc atgaagaaga
      601 agtcgctggg ggaggtgctg ctgccagtat ttgaaaggaa gggcattgcg ctgggcaaag
      661 tggatatcta cctggaccag tccaacacgc ccctgtccct cacctttgag gcctacaggt
      721 tcgggggaca ctacctgcgg gtcaaagcca agccagggga cgaggggaag gtggagcagg
      781 gggtgaagga ctccaagtcc ctgagtctgc caatcctgcg gccagccggg gccgggcccc
      841 ccacccagga gcgtgtggac ccgcagagcc gccgggagag cctggacatc ctggcccctg
      901 gccgccgacg caagaacatg tcggagttcc tgggggaggc gagcatccct gggcaggagc
      961 ccccagcgcc ctccagctgc tctctgccca gcggcagcag tagcggcagc agcagcagtg
     1021 gcggcagtga cagctggaag aaccgggcgg ccagtcgctt cagcggcttc ttcagctcag
     1081 gccccagcac cagcgccttc ggccgggagg tggccaagct ggagcagctg gagagcaagc
     1141 tgcacgccta cagcctcttc gggctgccca ggctgccccg gaggctgtgc tttgaccatg
     1201 actcatggga ggaggaaggt gacgaagagg agtacgagga tgacgcctgc ctgcggctgg
     1261 aggacagctg gcgagagctc atcgatggcc acgagaagct gacccggcgg cagtgccacc
     1321 agcaggaggc agtgtgggag ctcctgcaca cagaggcctc ctacattaag aaactgaggg
     1381 tgatcaccaa cctgttcctg tgctgcctcc tgaatctgca agagtcaggg ctgctgtgtg
     1441 aggtggaggc ggagcgcctg ttcagcaacg tcccggagat cgcgcggctg caccgcgggc
     1501 tgtggggcag cgtgatggcg ccggtgctgg agaaggcgcg gcgcacgcgg gcgctgctgc
     1561 agcccgggga tttcctcaaa ggctttaaga tgttcggctc cctcttcaag ccctacatcc
     1621 gatactgcat ggaggaggag ggctgcatgg agtacatgcg gggcctacta cgcgacaacg
     1681 acctcttccg ggcctacgtc acgtgggccg agaagcacca gcagtgccag cggctgaagc
     1741 tgagcgacat gctggccaag ccccaccagc ggctcaccaa gtacccgctg ctgctcaagt
     1801 cggtgctaag gaagaccgac gagccgcgcg ccaaggaggc cgtcgtcacc atgatcggct
     1861 cggtggagcg cttcatccac cacgtgaacg cgtgcatgcg gcagcgacag gagaggcagc
     1921 ggctggcggc cgtggtgagc cgcatcgacg cctacgaggt ggtggagggc agcaacgacg
     1981 aggtggacaa gctcctgaag gaatttctac atctggacct gacagcacca atccctggcg
     2041 cctcccctga ggagacacgc cagctgctgc tggaagggag cctgaggatg aaggagggga
     2101 aggacagcaa gatggacgtg tactgcttcc tcttcaccga cctgctcttg gtgaccaagg
     2161 cagtgaagaa ggcagagagg accaaggtga tcaggccacc actgctggtg gaaaagatcg
     2221 tgtgccggga gcttcgggac cctgggtcct tccttctcat ctacctgaac gagttccaca
     2281 gtgctgtggg ggcctacacg ttccaggcca gcggccaggc tttgtgccgt ggctgggtgg
     2341 acgccatcta cgatgcccag agccagcttc agcagctgcg tgtgcaggag cacccaggca
     2401 gccagcagca cctgcagagc ctggaagagg aggaggacgg gcaggaggac gaggacgagg
     2461 aaggagggga gagcagcgcg tcggctgcca gttcccctac cgccctgcgc aaaagcagca
     2521 gcagcctcga ctcgcagcgc tgtgtctcgg atggctccac ggagaccctg gccgtggtgg
     2581 tggtggagcc tggggggatg ctgtcctctc ccgagttcga gggcggcccc ttcagctccc
     2641 agtcagacaa gacctctctc ggcaccactg cctcgtctgt tacgcccacc agcgagctgc
     2701 tgcccctggg cccggtggat ggccgctcct gctctataga ctccgcctac ggcaccctct
     2761 ccccgacctc cctgcaagaa tttatggccc cggcccctat ggtggagcca gcactccggc
     2821 ccccagagtc atcgcgagcc ccgtcacccc caccctcgcc ccgcctccgc cgacgcactc
     2881 ctgtccagct gctgccctgt ctgccccacc tgctcaagtc caaatctgag gccagtctcc
     2941 tccagctgct gtcgggggcc accacccgtg gagcaccccc agcccctagc cgcagcctgt
     3001 cggaactctg cttggctgct accgtccctg gcaccaggac tcagggctcc cctcaggaag
     3061 ctgggcccag ctgggattgc cagggggcac caggccctgg cagtggcccc gagctgtcag
     3121 agctggaggg tggagccggc tgcccagctg gggagcccaa aggacccacc aggaggagca
     3181 gagagctgtc ctcgggggcc tcgcccaggc tccagcctga gcccccccca gggacctctg
     3241 cccagcacag gaagctgacg ttggcccagc tctaccgaat caggaccacc ctgctgctta
     3301 actccaccct cactgcctcg gaggtctgag cagagggagg ctctcagggg tgccactgac
     3361 caagggacag cagacagcac gcctccaggg gtgtgccggc ccctgctcca gctgctgcct
     3421 tatgtgtgcc ccagccagag tgctgggcag gacccctgcc accgccccca gggcccaatt
     3481 tgcactttgc cagactggct ggaagtggag gagggctcag cagaggccca ggcccaggct
     3541 gcagggccct gttacagcca ccactgtcac taaccagcct gcgcctccgc cccccagcct
     3601 aggcaaggtc ccttgcccaa tacccccgga gtcaccagct ccaagcctct gggctgggct
     3661 ccggggctgg gatcctaggc agcccttccc acctccaccc tcatctggcc ccaaatggga
     3721 cggttcccct gccctcgcct ccctccctcc ctccctccca cactcactcc cacccaccca
     3781 gcctccctcc cacctaccca cccacccaga ccttgggttg ggctctgtgt aaagttgcat
     3841 atttattgag cttttgattc ttttataaag acttgtatat actcca
//
LOCUS       XM_032649285            4428 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G5 (PLEKHG5), transcript variant X7, mRNA.
ACCESSION   XM_032649285
VERSION     XM_032649285.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4428
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4428
                     /gene="PLEKHG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762355"
     CDS             854..3871
                     /gene="PLEKHG5"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 5 isoform X5"
                     /protein_id="XP_032505176.1"
                     /db_xref="GeneID:116762355"
                     /translation="MHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAVDIEEEEESS
                     VDGKGDRKSTGLKLSKKKAWRRHTDDPSKECFTLKFDLNVDIETEIVPAMKKKSLGEV
                     LLPVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAKPGDEGKVEQGVKD
                     SKSLSLPILRPAGAGPPTQERVDPQSRRESLDILAPGRRRKNMSEFLGEASIPGQEPP
                     APSSCSLPSGSSSGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVAKLEQLESK
                     LHAYSLFGLPRLPRRLCFDHDSWEEEGDEEEYEDDACLRLEDSWRELIDGHEKLTRRQ
                     CHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEAERLFSNVPEIAR
                     LHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMR
                     GLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAK
                     EAVVTMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLKEFL
                     HLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERT
                     KVIRPPLLVEKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDAIYDA
                     QSQLQQLRVQEHPGSQQHLQSLEEEEDGQEDEDEEGGESSASAASSPTALRKSSSSLD
                     SQRCVSDGSTETLAVVVVEPGGMLSSPEFEGGPFSSQSDKTSLGTTASSVTPTSELLP
                     LGPVDGRSCSIDSAYGTLSPTSLQEFMAPAPMVEPALRPPESSRAPSPPPSPRLRRRT
                     PVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGTRTQGSP
                     QEAGPSWDCQGAPGPGSGPELSELEGGAGCPAGEPKGPTRRSRELSSGASPRLQPEPP
                     PGTSAQHRKLTLAQLYRIRTTLLLNSTLTASEV"
     misc_feature    1070..1294
                     /gene="PLEKHG5"
                     /note="Ras-binding domain (RBD) found in pleckstrin
                     homology (PH) and RhoGEF domain containing G5 (PLEKHG5)
                     and similar proteins; Region: RBD_PLEKHG5; cd17068"
                     /db_xref="CDD:340588"
     misc_feature    order(1088..1090,1178..1180)
                     /gene="PLEKHG5"
                     /note="key conserved lysines; other site"
                     /db_xref="CDD:340588"
     misc_feature    1871..2434
                     /gene="PLEKHG5"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(1880..1882,1892..1894,2201..2203,2285..2290,
                     2297..2302,2306..2311,2318..2323,2330..2335,2342..2344,
                     2417..2419,2429..2431)
                     /gene="PLEKHG5"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2600..2890
                     /gene="PLEKHG5"
                     /note="Pleckstrin homology domain-containing family G
                     member 5 and 6 pleckstrin homology (PH) domain; Region:
                     PH_PLEKHG5_G6; cd13244"
                     /db_xref="CDD:270064"
ORIGIN      
        1 ggtggatctg aggtccttgt ggagaaagaa tgggcaggat gtagtgaata atgggatagg
       61 gagtgaccta ttctcctggg caatgctttg gggggtaaga ggtgggaggc cagccagggt
      121 gcccttgaga atggccagat tctggggatc tctggaggtg gctggtctgt ggagatgcta
      181 gtcagctgta gacagggggc agtccagtgt gcagctggag aatggggcag gaccagagga
      241 gcaatgcaag gggaatttgg gggcgttggc taagtaattt ggaggggaga aggtgaaggc
      301 ctggtgtgcc caagaggcag agacagagga cccacctcat gctacctggc ggacatgagc
      361 tgctctggtg tggaccagcc ccagaaaggt ctgtaaaggg cagccccctc ggaaacagtg
      421 acaagcgcct cctcccctct gtccacagcg cggaccctag attagctcca agcgccggcc
      481 ggccctcctg ccacccgcct gggccgccgg gtggggcgcc gggcccttcc cgggactgca
      541 gaccctcccc cgtcccagcc gggcgcgccg atggtacgtc ccggcccgcc caggtggtag
      601 cgcccgcgcc ggcctaccgt aattccccta cgcccagcgc ccctagccgg cgcagagcgg
      661 accgagcccg ccgggcggct ccggtccccc tctgcctgcg ggcccgtcgg actctggcag
      721 ccttggcccg agccccagcc actggggagg agaaccttgt ccctagatat gccaccacgc
      781 cgactgccag cagctgcacc gccggggccc cctcagcctc tgcgaggcct gtgacagcaa
      841 gttccacggt gccatgcatt atgatgggca cgtccgcttc gacctgcccc cccaaggctc
      901 tgtcctggct cggaatgtgt ccacccggtc atgccccccg cgcaccagcc ctgcagtgga
      961 catagaggag gaggaagaga gctctgtgga tggcaagggg gaccggaaga gcacaggcct
     1021 gaagctctcc aagaagaaag cctggaggag acacacagat gacccaagca aggagtgttt
     1081 cacgctgaaa tttgacctga acgtggatat tgagacagag atcgtaccag ccatgaagaa
     1141 gaagtcgctg ggggaggtgc tgctgccagt atttgaaagg aagggcattg cgctgggcaa
     1201 agtggatatc tacctggacc agtccaacac gcccctgtcc ctcacctttg aggcctacag
     1261 gttcggggga cactacctgc gggtcaaagc caagccaggg gacgagggga aggtggagca
     1321 gggggtgaag gactccaagt ccctgagtct gccaatcctg cggccagccg gggccgggcc
     1381 ccccacccag gagcgtgtgg acccgcagag ccgccgggag agcctggaca tcctggcccc
     1441 tggccgccga cgcaagaaca tgtcggagtt cctgggggag gcgagcatcc ctgggcagga
     1501 gcccccagcg ccctccagct gctctctgcc cagcggcagc agtagcggca gcagcagcag
     1561 tggcggcagt gacagctgga agaaccgggc ggccagtcgc ttcagcggct tcttcagctc
     1621 aggccccagc accagcgcct tcggccggga ggtggccaag ctggagcagc tggagagcaa
     1681 gctgcacgcc tacagcctct tcgggctgcc caggctgccc cggaggctgt gctttgacca
     1741 tgactcatgg gaggaggaag gtgacgaaga ggagtacgag gatgacgcct gcctgcggct
     1801 ggaggacagc tggcgagagc tcatcgatgg ccacgagaag ctgacccggc ggcagtgcca
     1861 ccagcaggag gcagtgtggg agctcctgca cacagaggcc tcctacatta agaaactgag
     1921 ggtgatcacc aacctgttcc tgtgctgcct cctgaatctg caagagtcag ggctgctgtg
     1981 tgaggtggag gcggagcgcc tgttcagcaa cgtcccggag atcgcgcggc tgcaccgcgg
     2041 gctgtggggc agcgtgatgg cgccggtgct ggagaaggcg cggcgcacgc gggcgctgct
     2101 gcagcccggg gatttcctca aaggctttaa gatgttcggc tccctcttca agccctacat
     2161 ccgatactgc atggaggagg agggctgcat ggagtacatg cggggcctac tacgcgacaa
     2221 cgacctcttc cgggcctacg tcacgtgggc cgagaagcac cagcagtgcc agcggctgaa
     2281 gctgagcgac atgctggcca agccccacca gcggctcacc aagtacccgc tgctgctcaa
     2341 gtcggtgcta aggaagaccg acgagccgcg cgccaaggag gccgtcgtca ccatgatcgg
     2401 ctcggtggag cgcttcatcc accacgtgaa cgcgtgcatg cggcagcgac aggagaggca
     2461 gcggctggcg gccgtggtga gccgcatcga cgcctacgag gtggtggagg gcagcaacga
     2521 cgaggtggac aagctcctga aggaatttct acatctggac ctgacagcac caatccctgg
     2581 cgcctcccct gaggagacac gccagctgct gctggaaggg agcctgagga tgaaggaggg
     2641 gaaggacagc aagatggacg tgtactgctt cctcttcacc gacctgctct tggtgaccaa
     2701 ggcagtgaag aaggcagaga ggaccaaggt gatcaggcca ccactgctgg tggaaaagat
     2761 cgtgtgccgg gagcttcggg accctgggtc cttccttctc atctacctga acgagttcca
     2821 cagtgctgtg ggggcctaca cgttccaggc cagcggccag gctttgtgcc gtggctgggt
     2881 ggacgccatc tacgatgccc agagccagct tcagcagctg cgtgtgcagg agcacccagg
     2941 cagccagcag cacctgcaga gcctggaaga ggaggaggac gggcaggagg acgaggacga
     3001 ggaaggaggg gagagcagcg cgtcggctgc cagttcccct accgccctgc gcaaaagcag
     3061 cagcagcctc gactcgcagc gctgtgtctc ggatggctcc acggagaccc tggccgtggt
     3121 ggtggtggag cctgggggga tgctgtcctc tcccgagttc gagggcggcc ccttcagctc
     3181 ccagtcagac aagacctctc tcggcaccac tgcctcgtct gttacgccca ccagcgagct
     3241 gctgcccctg ggcccggtgg atggccgctc ctgctctata gactccgcct acggcaccct
     3301 ctccccgacc tccctgcaag aatttatggc cccggcccct atggtggagc cagcactccg
     3361 gcccccagag tcatcgcgag ccccgtcacc cccaccctcg ccccgcctcc gccgacgcac
     3421 tcctgtccag ctgctgccct gtctgcccca cctgctcaag tccaaatctg aggccagtct
     3481 cctccagctg ctgtcggggg ccaccacccg tggagcaccc ccagccccta gccgcagcct
     3541 gtcggaactc tgcttggctg ctaccgtccc tggcaccagg actcagggct cccctcagga
     3601 agctgggccc agctgggatt gccagggggc accaggccct ggcagtggcc ccgagctgtc
     3661 agagctggag ggtggagccg gctgcccagc tggggagccc aaaggaccca ccaggaggag
     3721 cagagagctg tcctcggggg cctcgcccag gctccagcct gagccccccc cagggacctc
     3781 tgcccagcac aggaagctga cgttggccca gctctaccga atcaggacca ccctgctgct
     3841 taactccacc ctcactgcct cggaggtctg agcagaggga ggctctcagg ggtgccactg
     3901 accaagggac agcagacagc acgcctccag gggtgtgccg gcccctgctc cagctgctgc
     3961 cttatgtgtg ccccagccag agtgctgggc aggacccctg ccaccgcccc cagggcccaa
     4021 tttgcacttt gccagactgg ctggaagtgg aggagggctc agcagaggcc caggcccagg
     4081 ctgcagggcc ctgttacagc caccactgtc actaaccagc ctgcgcctcc gccccccagc
     4141 ctaggcaagg tcccttgccc aatacccccg gagtcaccag ctccaagcct ctgggctggg
     4201 ctccggggct gggatcctag gcagcccttc ccacctccac cctcatctgg ccccaaatgg
     4261 gacggttccc ctgccctcgc ctccctccct ccctccctcc cacactcact cccacccacc
     4321 cagcctccct cccacctacc cacccaccca gaccttgggt tgggctctgt gtaaagttgc
     4381 atatttattg agcttttgat tcttttataa agacttgtat atactcca
//
LOCUS       XM_032649295            4142 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G5 (PLEKHG5), transcript variant X8, mRNA.
ACCESSION   XM_032649295
VERSION     XM_032649295.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4142
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4142
                     /gene="PLEKHG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762355"
     CDS             151..3330
                     /gene="PLEKHG5"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 5 isoform X6"
                     /protein_id="XP_032505186.1"
                     /db_xref="GeneID:116762355"
                     /translation="MEDRSLAEEKGLCCQNPDCMDKGRAAKICHHADCQQLHRRGPLS
                     LCEACDSKFHGAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAVDIEEEEESSVD
                     GKGDRKSTGLKLSKKKAWRRHTDDPSKECFTLKFDLNVDIETEIVPAMKKKSLGEVLL
                     PVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAKPGDEGKVEQGVKDSK
                     SLSLPILRPAGAGPPTQERVDPQSRRESLDILAPGRRRKNMSEFLGEASIPGQEPPAP
                     SSCSLPSGSSSGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVAKLEQLESKLH
                     AYSLFGLPRLPRRLCFDHDSWEEEGDEEEYEDDACLRLEDSWRELIDGHEKLTRRQCH
                     QQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEAERLFSNVPEIARLH
                     RGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGL
                     LRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEA
                     VVTMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLKEFLHL
                     DLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKV
                     IRPPLLVEKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDAIYDAQS
                     QLQQLRVQEHPGSQQHLQSLEEEEDGQEDEDEEGGESSASAASSPTALRKSSSSLDSQ
                     RCVSDGSTETLAVVVVEPGGMLSSPEFEGGPFSSQSDKTSLGTTASSVTPTSELLPLG
                     PVDGRSCSIDSAYGTLSPTSLQEFMAPAPMVEPALRPPESSRAPSPPPSPRLRRRTPV
                     QLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGTRTQGSPQE
                     AGPSWDCQGAPGPGSGPELSELEGGAGCPAGEPKGPTRRSRELSSGASPRLQPEPPPG
                     TSAQHRKLTLAQLYRIRTTLLLNSTLTAS"
     misc_feature    535..759
                     /gene="PLEKHG5"
                     /note="Ras-binding domain (RBD) found in pleckstrin
                     homology (PH) and RhoGEF domain containing G5 (PLEKHG5)
                     and similar proteins; Region: RBD_PLEKHG5; cd17068"
                     /db_xref="CDD:340588"
     misc_feature    order(553..555,643..645)
                     /gene="PLEKHG5"
                     /note="key conserved lysines; other site"
                     /db_xref="CDD:340588"
     misc_feature    1336..1899
                     /gene="PLEKHG5"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(1345..1347,1357..1359,1666..1668,1750..1755,
                     1762..1767,1771..1776,1783..1788,1795..1800,1807..1809,
                     1882..1884,1894..1896)
                     /gene="PLEKHG5"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2065..2355
                     /gene="PLEKHG5"
                     /note="Pleckstrin homology domain-containing family G
                     member 5 and 6 pleckstrin homology (PH) domain; Region:
                     PH_PLEKHG5_G6; cd13244"
                     /db_xref="CDD:270064"
ORIGIN      
        1 ctagccgcag agggtcccgc ggccgcggcg ctccggcctc tcccccggcg ctcggccggc
       61 gtccgcccca cgccgccgtt gcgctcgccc ccggccggcc cgcggcgccc cccgcaccgc
      121 ccgcgttccc ggcctcccgg cgcctcttcc atggaagacc ggagcctggc tgaagagaag
      181 ggactgtgct gtcagaaccc cgactgcatg gacaaggggc gggcggctaa gatatgccac
      241 cacgccgact gccagcagct gcaccgccgg ggccccctca gcctctgcga ggcctgtgac
      301 agcaagttcc acggtgccat gcattatgat gggcacgtcc gcttcgacct gcccccccaa
      361 ggctctgtcc tggctcggaa tgtgtccacc cggtcatgcc ccccgcgcac cagccctgca
      421 gtggacatag aggaggagga agagagctct gtggatggca agggggaccg gaagagcaca
      481 ggcctgaagc tctccaagaa gaaagcctgg aggagacaca cagatgaccc aagcaaggag
      541 tgtttcacgc tgaaatttga cctgaacgtg gatattgaga cagagatcgt accagccatg
      601 aagaagaagt cgctggggga ggtgctgctg ccagtatttg aaaggaaggg cattgcgctg
      661 ggcaaagtgg atatctacct ggaccagtcc aacacgcccc tgtccctcac ctttgaggcc
      721 tacaggttcg ggggacacta cctgcgggtc aaagccaagc caggggacga ggggaaggtg
      781 gagcaggggg tgaaggactc caagtccctg agtctgccaa tcctgcggcc agccggggcc
      841 gggcccccca cccaggagcg tgtggacccg cagagccgcc gggagagcct ggacatcctg
      901 gcccctggcc gccgacgcaa gaacatgtcg gagttcctgg gggaggcgag catccctggg
      961 caggagcccc cagcgccctc cagctgctct ctgcccagcg gcagcagtag cggcagcagc
     1021 agcagtggcg gcagtgacag ctggaagaac cgggcggcca gtcgcttcag cggcttcttc
     1081 agctcaggcc ccagcaccag cgccttcggc cgggaggtgg ccaagctgga gcagctggag
     1141 agcaagctgc acgcctacag cctcttcggg ctgcccaggc tgccccggag gctgtgcttt
     1201 gaccatgact catgggagga ggaaggtgac gaagaggagt acgaggatga cgcctgcctg
     1261 cggctggagg acagctggcg agagctcatc gatggccacg agaagctgac ccggcggcag
     1321 tgccaccagc aggaggcagt gtgggagctc ctgcacacag aggcctccta cattaagaaa
     1381 ctgagggtga tcaccaacct gttcctgtgc tgcctcctga atctgcaaga gtcagggctg
     1441 ctgtgtgagg tggaggcgga gcgcctgttc agcaacgtcc cggagatcgc gcggctgcac
     1501 cgcgggctgt ggggcagcgt gatggcgccg gtgctggaga aggcgcggcg cacgcgggcg
     1561 ctgctgcagc ccggggattt cctcaaaggc tttaagatgt tcggctccct cttcaagccc
     1621 tacatccgat actgcatgga ggaggagggc tgcatggagt acatgcgggg cctactacgc
     1681 gacaacgacc tcttccgggc ctacgtcacg tgggccgaga agcaccagca gtgccagcgg
     1741 ctgaagctga gcgacatgct ggccaagccc caccagcggc tcaccaagta cccgctgctg
     1801 ctcaagtcgg tgctaaggaa gaccgacgag ccgcgcgcca aggaggccgt cgtcaccatg
     1861 atcggctcgg tggagcgctt catccaccac gtgaacgcgt gcatgcggca gcgacaggag
     1921 aggcagcggc tggcggccgt ggtgagccgc atcgacgcct acgaggtggt ggagggcagc
     1981 aacgacgagg tggacaagct cctgaaggaa tttctacatc tggacctgac agcaccaatc
     2041 cctggcgcct cccctgagga gacacgccag ctgctgctgg aagggagcct gaggatgaag
     2101 gaggggaagg acagcaagat ggacgtgtac tgcttcctct tcaccgacct gctcttggtg
     2161 accaaggcag tgaagaaggc agagaggacc aaggtgatca ggccaccact gctggtggaa
     2221 aagatcgtgt gccgggagct tcgggaccct gggtccttcc ttctcatcta cctgaacgag
     2281 ttccacagtg ctgtgggggc ctacacgttc caggccagcg gccaggcttt gtgccgtggc
     2341 tgggtggacg ccatctacga tgcccagagc cagcttcagc agctgcgtgt gcaggagcac
     2401 ccaggcagcc agcagcacct gcagagcctg gaagaggagg aggacgggca ggaggacgag
     2461 gacgaggaag gaggggagag cagcgcgtcg gctgccagtt cccctaccgc cctgcgcaaa
     2521 agcagcagca gcctcgactc gcagcgctgt gtctcggatg gctccacgga gaccctggcc
     2581 gtggtggtgg tggagcctgg ggggatgctg tcctctcccg agttcgaggg cggccccttc
     2641 agctcccagt cagacaagac ctctctcggc accactgcct cgtctgttac gcccaccagc
     2701 gagctgctgc ccctgggccc ggtggatggc cgctcctgct ctatagactc cgcctacggc
     2761 accctctccc cgacctccct gcaagaattt atggccccgg cccctatggt ggagccagca
     2821 ctccggcccc cagagtcatc gcgagccccg tcacccccac cctcgccccg cctccgccga
     2881 cgcactcctg tccagctgct gccctgtctg ccccacctgc tcaagtccaa atctgaggcc
     2941 agtctcctcc agctgctgtc gggggccacc acccgtggag cacccccagc ccctagccgc
     3001 agcctgtcgg aactctgctt ggctgctacc gtccctggca ccaggactca gggctcccct
     3061 caggaagctg ggcccagctg ggattgccag ggggcaccag gccctggcag tggccccgag
     3121 ctgtcagagc tggagggtgg agccggctgc ccagctgggg agcccaaagg acccaccagg
     3181 aggagcagag agctgtcctc gggggcctcg cccaggctcc agcctgagcc ccccccaggg
     3241 acctctgccc agcacaggaa gctgacgttg gcccagctct accgaatcag gaccaccctg
     3301 ctgcttaact ccaccctcac tgcctcgtga gtggcctggc ctgggacagg tggcccagtg
     3361 tgctgggggc actgtcatgg cggggagcag atggcatttg gggacgggtg tgggagaggg
     3421 agcctgagac cagcctcagc acctggtgag gatgaaacag tgggcagtgg tgaagaagag
     3481 gcctgaggat tccggtcggg aggagagggt ggttggagcc cctccaaatg ccttcagcca
     3541 aggaaggacc atctctcccc tcctctccac tgcagggagg tctgagcaga gggaggctct
     3601 caggggtgcc actgaccaag ggacagcaga cagcacgcct ccaggggtgt gccggcccct
     3661 gctccagctg ctgccttatg tgtgccccag ccagagtgct gggcaggacc cctgccaccg
     3721 cccccagggc ccaatttgca ctttgccaga ctggctggaa gtggaggagg gctcagcaga
     3781 ggcccaggcc caggctgcag ggccctgtta cagccaccac tgtcactaac cagcctgcgc
     3841 ctccgccccc cagcctaggc aaggtccctt gcccaatacc cccggagtca ccagctccaa
     3901 gcctctgggc tgggctccgg ggctgggatc ctaggcagcc cttcccacct ccaccctcat
     3961 ctggccccaa atgggacggt tcccctgccc tcgcctccct ccctccctcc ctcccacact
     4021 cactcccacc cacccagcct ccctcccacc tacccaccca cccagacctt gggttgggct
     4081 ctgtgtaaag ttgcatattt attgagcttt tgattctttt ataaagactt gtatatactc
     4141 ca
//
LOCUS       XM_032649316            7982 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium calcium-activated channel
            subfamily N member 3 (KCNN3), transcript variant X1, mRNA.
ACCESSION   XM_032649316
VERSION     XM_032649316.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7982
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7982
                     /gene="KCNN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 33
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762397"
     CDS             328..2484
                     /gene="KCNN3"
                     /codon_start=1
                     /product="small conductance calcium-activated potassium
                     channel protein 3 isoform X1"
                     /protein_id="XP_032505207.1"
                     /db_xref="GeneID:116762397"
                     /translation="MDTSGHFHDSGVGDLDEDPKCPCPSSGDEQQQQPPPPPPPAPPA
                     APQQPPGPPLQPQPPQLQQQQQQQPHPLSQLAQLQSQPIHPGLLHSSPTAFRGPPSSN
                     STAILHPSSRQGSQLNLNDHLLGHSPTSTATSGPGGGGRHRQASPLVHRRDSNPFTEI
                     AMSSCKYSGGVMKPLSRLSASRRNLIEAEPEGQPLQLFSPSNPPEIVISSREDNHAHQ
                     TLLHHPNAAHNHQHAGATASSTTFPKANKRKNQNIGYKLGHRRALFEKRKRLSDYALI
                     FGMFGIVVMVIETELSWGLYSKDSMFSLALKCLISLSTIILLGLIIAYHTREVQLFVI
                     DNGADDWRIAMTYERILYISLEMLVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDI
                     ILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVL
                     LVFSISLWIIAAWTVRVCERYHDQQDVTSNFLGAMWLISITFLSIGYGDMVPHTYCGK
                     GVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRET
                     WLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLSDQANTLVDLSKMQNV
                     MYDLITELNDRSEDLEKQIGSLESKLEHLTASVNSLPLLIADTLRQQQRQFLSALTEA
                     RGVSVAVGTTHTPLSDSPIGVSSTSFPTPYTSSSSC"
     misc_feature    1096..1425
                     /gene="KCNN3"
                     /note="Calcium-activated SK potassium channel; Region:
                     SK_channel; pfam03530"
                     /db_xref="CDD:460958"
     misc_feature    1690..1929
                     /gene="KCNN3"
                     /note="Ion channel; Region: Ion_trans_2; pfam07885"
                     /db_xref="CDD:462301"
     misc_feature    1969..2193
                     /gene="KCNN3"
                     /note="Calmodulin binding domain; Region: CaMBD;
                     pfam02888"
                     /db_xref="CDD:460739"
     misc_feature    <2092..>2364
                     /gene="KCNN3"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 attgagccag cgaggagtga agctgaacct ggactcacac gctcctagag gaccacctcc
       61 tgagacagag ttctttttcc cccttcttca tctttctcca agctcccctc ctgccctccc
      121 tccctgccca gtacaatgca ttcttgagtg gcagcgtctg gactccaggc agccccagaa
      181 aaccggagca agccaaagag agaggactgg agccaagaca ctctggtggg ggagcttgga
      241 tgcctggctt cctttgagga catctttgga acgagggtgg ctttggggtg gggagttgtg
      301 ctgcagggaa tccagccagg ccccaagatg gacacttctg ggcacttcca tgactccggg
      361 gtgggggacc tggatgaaga ccccaagtgc ccctgtccat cctccgggga tgagcagcag
      421 cagcagccgc cgccgccgcc gccaccagca ccaccagcag ccccccagca gcccccagga
      481 cccccgttgc agcctcagcc tccgcagctt cagcagcagc agcagcagca gccgcatccc
      541 ctgtctcagc tcgcccaact ccagagccag cccatccacc ccggcctgct acactcctct
      601 cccactgctt tcaggggccc cccttcatcc aactccaccg ccatcctcca cccttcctcc
      661 aggcaaggca gccagctcaa tctcaatgac cacttgcttg gccactctcc aacttccaca
      721 gccacaagtg ggcctggtgg aggaggccgg caccggcagg ccagccccct ggtgcaccgg
      781 cgggacagca accccttcac agagatagcc atgagctcct gcaagtacag cggtggggtc
      841 atgaagcccc tcagccggct cagcgcctcc cggaggaacc tcatcgaggc tgagcccgag
      901 ggccagcccc tccagctctt cagccccagc aaccccccgg agatcgtcat ctcctcccgg
      961 gaggacaacc atgcccacca gaccctgctc catcacccca atgctgccca caaccaccag
     1021 cacgccggcg ccaccgccag cagcaccacc ttccccaaag ccaacaagcg gaaaaaccaa
     1081 aacattggct ataagctggg acacaggagg gccctgtttg aaaagaggaa gcgactgagt
     1141 gactatgctc tgatttttgg gatgtttgga attgttgtta tggtgataga gaccgagctc
     1201 tcttggggtt tgtactcaaa ggattccatg ttttcattgg ccctgaaatg ccttatcagt
     1261 ctgtccacca tcatcctttt gggtttgatc atcgcctatc acacacgtga agtccagctc
     1321 ttcgtgatcg acaatggtgc ggacgactgg cggatagcca tgacctacga gcgcatcctc
     1381 tacatcagcc tggagatgct ggtgtgcgcc atccacccca ttcctggcga gtacaagttc
     1441 ttctggacgg cgcgtctggc cttctcctac acaccctcgc gggcggaggc cgacgtggac
     1501 atcatcctgt ccatcccgat gttcctgcgc ctgtacctga tcgcccgcgt catgctactg
     1561 cacagcaagc tcttcacgga cgcctcttcc cgcagcatcg gggccctcaa caagatcaac
     1621 ttcaacacac gctttgtcat gaagaccctc atgaccatct gccccggcac cgtgctcctc
     1681 gtgttcagca tctcactgtg gatcatcgct gcctggaccg tccgcgtctg cgaaaggtac
     1741 catgaccagc aggacgtaac tagtaacttt ctgggtgcca tgtggctcat ctctatcaca
     1801 ttcctttcca ttggttatgg ggatatggtg ccccacacat actgtgggaa aggtgtctgt
     1861 cttctcacgg gcattatggg tgcgggctgt actgccctgg tggtggccgt ggtggcccga
     1921 aagctggaac tcaccaaagc agagaagcac gttcacaact tcatgatgga cactcagctc
     1981 accaaacgga tcaagaatgc tgcagccaat gtccttcggg aaacgtggct aatctataaa
     2041 cacacaaagc tgctaaagaa gattgaccac gccaaagtca ggaaacacca gaggaagttc
     2101 ctccaagcaa tccaccaact gaggagcgtc aagatggagc agaggaagct gagtgaccaa
     2161 gccaacaccc tggtggacct ttccaagatg cagaacgtca tgtatgactt aatcacagaa
     2221 ctcaatgatc ggagcgaaga tctggagaaa caaatcggca gtctggagtc gaagctggag
     2281 cacctcaccg ccagcgtcaa ttccctgccc ctgctcatcg cggacaccct gcgccagcag
     2341 cagcggcagt tcctgtctgc cctcacggag gcccggggcg tcagcgtggc agtgggcacc
     2401 acccacaccc cactctccga cagcccaatc ggggtcagct ccacctcctt cccaaccccg
     2461 tacacgagtt caagcagttg ctaaataaaa ctccccactt cagaagcatt acccataggt
     2521 cttaagatgc aaatcaactc tctcctggtc gctttgccat caaggaacat gcagaccagg
     2581 gaacgtaaag aagagagacc gagctaatta actaactcat gttcattcag cgtgcttggt
     2641 ttgatatgcc ttgaaaccag aaatctgatc tctgtttagg tgcctctact cgggagcagc
     2701 aagaggagat gacaggaagc gacgcctctg gtagggccct tgcggcacag ttggtggaga
     2761 acagacaccc acgttcaatc tcaggtcttc acgtggtggg gggtgggagc tcagatgcac
     2821 tgaagtagcc cgcagtgaag ccagcccgga ggagggtccc gcggggggag ggcatggtgt
     2881 caggcttggg ggatgggttc ttcaccccgg ggtcctccag cccacctgtc tgcgttcctt
     2941 ctgtctaagg aagcccctgg atgacaaagt aagggagagc cacccacagc ttttgccaag
     3001 acagacatgc tttcctgcca tccctcgcac agtcataaaa caaaatttag actgaaagaa
     3061 aaatagacaa ataaaaagcc agactttcca tccaatatta atacccatat aaacctgtgt
     3121 atttgcaagc gtgtgcgtgt acacacacac atacacatcc cacagtcaac ccaggtcttt
     3181 tctggtttgc acctggccca aataaagagg gacctggtac cttaccctgc acgcagtagg
     3241 cactctctaa atgcacgttg agttggtctg aatcgggatg tgggcgctgt cagttcaggt
     3301 ggtttgccag tgtcggccac gtcctgagct tcactgaaga ggcaggttgc ttcaaacaca
     3361 aaacagggtg ctttgccctg ggtatgcacc atgcttgctc tgagatgaat gacaagccag
     3421 aattggcatt ctggagagat aagcagcctt ctaaaaataa cagcttctgc agagttttca
     3481 tcttatatcc aaacaagctg tgttccactg gaatgcatga tcaggtgtat gtgtgtgagg
     3541 gaaggggggc gggatctgtc cctgcaagca cacacatgca ccaacaggtg tgaccccagg
     3601 acacctgcat gaatagaagt attgtcaggg gggtttgctc attgatattt atccagcaac
     3661 aggtttacag ccccagatgt taggagcgca aaggggtcaa gtgcctcacc tgagagctgg
     3721 gagaagtgat ggtgagtggc ccagctggtc ctttctacct gacctaaaac cacctcaaag
     3781 tgtaaggtta tgaggataaa gggagattct agggaaccct gtgggtaaga taaggtgaca
     3841 gggatttgtc agtatcctgt tcctgctgtg ccacgttaat cttggtgcag aaactattgt
     3901 aatacatctc aaactccaag ggactccaga aacatccaga gccagcgtat gacaggcgtt
     3961 gtgaggagag gccatggggg tgcattgata ttttccgcac tccatcatct aaccatgcat
     4021 gatgtttgtg atgtgaaaac catcatacta atcatcacat ttctcattct gaggtctttg
     4081 acgtctgctt gtgggcactt aaatcatact gtagggaata tttcatctgt ttagggtaaa
     4141 acagaagggt atcatttgtg gatggctgtc ctgttgggtt tcactttgta caggacatcg
     4201 ccacttttcc aaaggcagag tctagctgtg aagacttttc ctctacagca ctgggcctgg
     4261 tcttctaagg gcaagggaat catcagacag caaaatgtag accaccctag aaaggccact
     4321 ctttcaagaa gatctggtct cttgttcaac ctcttcttat atctcttttc attgctgtgc
     4381 tcttcccttg atgccctcat ttttatcttg ataactcctt tgagcatttt ccttggttgc
     4441 tttgcacacc atagatgcca cacttgctgc tggctttaac atttttttgc ttgtcctttt
     4501 aactatcgat tatctaaaag atccctctcc ttttttatgt cccaggaatg gtgctcctgt
     4561 tttcagtgac agctgaacat ataaacagac caataagcag atgaaataac catgcagttt
     4621 ctttgtggcg ttagttcatt tcacaaagaa atgaagtgaa gagcgctgac aggtcaacct
     4681 gaacatgcca atcccaatca tctaacctac agccctcagt tcttaattcc tggtcaccct
     4741 tcccattccc ccgtaaccct gtgatgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgcaca
     4801 caaataggga tttaatctga atttcaaaca aatggcatgc aagattccac tgccactcct
     4861 cctgccaaaa agtgtgtgta gactgtcatt gacccatcac tgtctgtggg tgactcttct
     4921 ttaacccacc actaatgcta ttcacttagg taaatcctga tgacctgtaa cctagcaaca
     4981 ctagcaaaga gagtggttgg agatatttcc agtagcagta gccactggca tcctagaaac
     5041 atatgggcat ttgtagcatg actggaccta ttggtagtgc aatagctacg tatggttttt
     5101 atccttggcg aaagagtact tactcttcgg ggaaaaaaaa aaaaagtgat caaatctgca
     5161 tgttgatcct gcaatggtaa atgggaggct gcttctctgt actggttttt cagctttatg
     5221 tggggaagtt gcccattctc ctgcaagtac aatcaaccct tgatgactta ggtattgatt
     5281 agggtgtagc tcacgcaggt tttcttccta gagcccatct tttggttaat tccactgagc
     5341 ctccgcatct tagtcagatg gggaaagggg gctggtggat tctcgtgcca tgacttcctg
     5401 ttctgtaatt tcaagtttgg tggtggagga ggtttaatta tctactcaag aattggctat
     5461 atggaaaaac tattaattac agtaacctca ctccagtact gaactgattg agttctgccc
     5521 actgctgcaa ggatgaccca gtggcagagc ccctactata atccttctga taactcggtg
     5581 tcaggtaaaa gtactctaat attccctaaa atatctagac acttgaatta aaaatacaga
     5641 gccaccccct catcgcttaa gccatattat agcttcatgt actgtaaagt cagggatgta
     5701 ctgtgatact ttaagaccac taatctcagc ggaatttcag gacatagcat cagttggtaa
     5761 attatagcag actagggagt cactcctcct tagattgaag tccaaataaa aatctgcatc
     5821 tttggatcaa aggccacata tgtgtgatca tcatcgatac atttatcatg aagtgtctat
     5881 gaactgctct tgccatcctc ataatatgta acttcatgac atcgtatctc tagaaatgct
     5941 taatgcaatg caaaagaata agaggggtaa ggccctgcat caccactaac ctctgacctc
     6001 agcaagtacc agtggcgtaa caacagtctc ataactgaag aggtagagaa aatgtgtatg
     6061 caagtaattt ccaaagtgct gagcaagtgc aaactgttgt tatttattaa aggccaagaa
     6121 gaaacagcat tgaagaaacc atgattttaa tatataatat ttgaggcttt cccccttaga
     6181 tttttgataa tttcttgtga ataagtcatg atggaagaga agaaaactag agatgcagaa
     6241 tcagaataaa taaaactcta acgctggatc cacatctttg gccaatgaat ataaccacct
     6301 catacctcaa tttctctatg cttaaaatga aggtaacagt taatattctt aagtacaaag
     6361 tactcaatag agtttaaaat gaaatcacta ttgccaacaa cagcagccca gactgactct
     6421 ggcaagtcca cactttgatg ttgcctctga atgtagtcaa tagttaccaa aagtaattct
     6481 tacatatcaa cctatgtgaa actagcaggg agaagtatgg gattagcaca tagtcccagg
     6541 acctctctcc ttcagagcat acctcaacaa acagtgcacc ccaaattaag aaccagtgtt
     6601 tcatcccaga acccatggtg ttgctaccat cacagtacca caactgagac actatgaagt
     6661 cattgcacta ccagtaggtt actgctcttt taaagttact gcttttaaat cctaaagtac
     6721 gtcccagttc tacacagtca tcctacttcc ctggatgttg cttagaagca gatgaaggct
     6781 ccatcagtgg ccatttggct gcccctattg actctgcggc attcggtttc agtaccttag
     6841 acagctatct ggtggcttcc tggtaggcgg gaacagcccc ttcccttccc ggcagtcagt
     6901 cagcttaatg acgccctgga cagtatccct tccttctcta ctgccgccaa agtaaacact
     6961 gtgggaacgg gatcattgat accactaaga aaggaatgtt acagggatag caatattaac
     7021 tgtctgcctc tggcagtaga atataggtga gcgctcttca tcctgaaagc ttgtgccagg
     7081 ctgcgtgact agttaacagt aaactcctgt cagacaagta atatgtagat ttttactaaa
     7141 atagaccgaa gcttattaaa agtactcagt gcaatggtat atgaatacat acagatagag
     7201 aaaaaaaata actgtgatct ttttttctta caccattact ggaaatgccc aaacgtgaac
     7261 tggagttcgc tctgaacaaa accattatca aatcatcaac atatgacctc caaatctagg
     7321 tgccaagtgc cctgccacag ttgtttacac acctgagaaa cgtgttctgg aagctgtact
     7381 cttgggcctg gaccatgtgt tgaaacaaac aaaagagacg ttgtgaccaa ccaagctgat
     7441 ggaggaaaag cacaaaattc aacaccaacc tatagttcgg atcccaaaga gatgctgaat
     7501 ttatagccaa aaaaaaaaaa aattatatat atatatatat atagagagag agagagacaa
     7561 agcaaatatc aatctgatcg gaacagccaa catccaagtt cacagaagaa ggacagggaa
     7621 taaacaacat tctctagctg tgtcatattg tctcagtctt tgaatctcaa ctaggactga
     7681 tccaccttca tcagacacac tttttaatgg cgcaacaact caatgctggt cccagactct
     7741 ccattctgca ctgaccagaa gagaacaaca aaagagagca acagatgtta atggaggaaa
     7801 tattttcatg gtgaactcag aaactgatgt gtttatattc agaatcagat gagcttcaat
     7861 atgaatttgc atcttgcctc tgtactgctt gctatttttt aatgatagga caaagtataa
     7921 cagtttattt taaatatgaa atatattgct atattataaa atatattgta actttcaact
     7981 aa
//
LOCUS       XM_032649323            7647 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium calcium-activated channel
            subfamily N member 3 (KCNN3), transcript variant X2, mRNA.
ACCESSION   XM_032649323
VERSION     XM_032649323.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7647
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7647
                     /gene="KCNN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762397"
     CDS             239..2377
                     /gene="KCNN3"
                     /codon_start=1
                     /product="small conductance calcium-activated potassium
                     channel protein 3 isoform X2"
                     /protein_id="XP_032505214.1"
                     /db_xref="GeneID:116762397"
                     /translation="MDTSGHFHDSGVGDLDEDPKCPCPSSGDEQQQQPPPPPPPAPPA
                     APQQPPGPPLQPQPPQLQQQQQQQPHPLSQLAQLQSQPIHPGLLHSSPTAFRGPPSSN
                     STAILHPSSRQGSQLNLNDHLLGHSPTSTATSGPGGGGRHRQASPLVHRRDSNPFTEI
                     AMSSCKYSGGVMKPLSRLSASRRNLIEAEPEGQPLQLFSPSNPPEIVISSREDNHAHQ
                     TLLHHPNAAHNHQHAGATASSTTFPKANKRKNQNIGYKLGHRRALFEKRKRLSDYALI
                     FGMFGIVVMVIETELSWGLYSKDSMFSLALKCLISLSTIILLGLIIAYHTREVQLFVI
                     DNGADDWRIAMTYERILYISLEMLVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDI
                     ILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVL
                     LVFSISLWIIAAWTVRVCERYHDQQDVTSNFLGAMWLISITFLSIGYGDMVPHTYCGK
                     GVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRET
                     WLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLSDQANTLVDLSKMQNV
                     MYDLITELNDRSEDLEKQIGSLESKLEHLTASVNSLPLLIADTLRQQQRQFLSALTEA
                     RGVSVAVGTTHTPLSDSPIGVPLLGSSKRR"
     misc_feature    1007..1336
                     /gene="KCNN3"
                     /note="Calcium-activated SK potassium channel; Region:
                     SK_channel; pfam03530"
                     /db_xref="CDD:460958"
     misc_feature    1601..1840
                     /gene="KCNN3"
                     /note="Ion channel; Region: Ion_trans_2; pfam07885"
                     /db_xref="CDD:462301"
     misc_feature    1880..2104
                     /gene="KCNN3"
                     /note="Calmodulin binding domain; Region: CaMBD;
                     pfam02888"
                     /db_xref="CDD:460739"
     misc_feature    <2003..>2275
                     /gene="KCNN3"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 atctttctcc aagctcccct cctgccctcc ctccctgccc agtacaatgc attcttgagt
       61 ggcagcgtct ggactccagg cagccccaga aaaccggagc aagccaaaga gagaggactg
      121 gagccaagac actctggtgg gggagcttgg atgcctggct tcctttgagg acatctttgg
      181 aacgagggtg gctttggggt ggggagttgt gctgcaggga atccagccag gccccaagat
      241 ggacacttct gggcacttcc atgactccgg ggtgggggac ctggatgaag accccaagtg
      301 cccctgtcca tcctccgggg atgagcagca gcagcagccg ccgccgccgc cgccaccagc
      361 accaccagca gccccccagc agcccccagg acccccgttg cagcctcagc ctccgcagct
      421 tcagcagcag cagcagcagc agccgcatcc cctgtctcag ctcgcccaac tccagagcca
      481 gcccatccac cccggcctgc tacactcctc tcccactgct ttcaggggcc ccccttcatc
      541 caactccacc gccatcctcc acccttcctc caggcaaggc agccagctca atctcaatga
      601 ccacttgctt ggccactctc caacttccac agccacaagt gggcctggtg gaggaggccg
      661 gcaccggcag gccagccccc tggtgcaccg gcgggacagc aaccccttca cagagatagc
      721 catgagctcc tgcaagtaca gcggtggggt catgaagccc ctcagccggc tcagcgcctc
      781 ccggaggaac ctcatcgagg ctgagcccga gggccagccc ctccagctct tcagccccag
      841 caaccccccg gagatcgtca tctcctcccg ggaggacaac catgcccacc agaccctgct
      901 ccatcacccc aatgctgccc acaaccacca gcacgccggc gccaccgcca gcagcaccac
      961 cttccccaaa gccaacaagc ggaaaaacca aaacattggc tataagctgg gacacaggag
     1021 ggccctgttt gaaaagagga agcgactgag tgactatgct ctgatttttg ggatgtttgg
     1081 aattgttgtt atggtgatag agaccgagct ctcttggggt ttgtactcaa aggattccat
     1141 gttttcattg gccctgaaat gccttatcag tctgtccacc atcatccttt tgggtttgat
     1201 catcgcctat cacacacgtg aagtccagct cttcgtgatc gacaatggtg cggacgactg
     1261 gcggatagcc atgacctacg agcgcatcct ctacatcagc ctggagatgc tggtgtgcgc
     1321 catccacccc attcctggcg agtacaagtt cttctggacg gcgcgtctgg ccttctccta
     1381 cacaccctcg cgggcggagg ccgacgtgga catcatcctg tccatcccga tgttcctgcg
     1441 cctgtacctg atcgcccgcg tcatgctact gcacagcaag ctcttcacgg acgcctcttc
     1501 ccgcagcatc ggggccctca acaagatcaa cttcaacaca cgctttgtca tgaagaccct
     1561 catgaccatc tgccccggca ccgtgctcct cgtgttcagc atctcactgt ggatcatcgc
     1621 tgcctggacc gtccgcgtct gcgaaaggta ccatgaccag caggacgtaa ctagtaactt
     1681 tctgggtgcc atgtggctca tctctatcac attcctttcc attggttatg gggatatggt
     1741 gccccacaca tactgtggga aaggtgtctg tcttctcacg ggcattatgg gtgcgggctg
     1801 tactgccctg gtggtggccg tggtggcccg aaagctggaa ctcaccaaag cagagaagca
     1861 cgttcacaac ttcatgatgg acactcagct caccaaacgg atcaagaatg ctgcagccaa
     1921 tgtccttcgg gaaacgtggc taatctataa acacacaaag ctgctaaaga agattgacca
     1981 cgccaaagtc aggaaacacc agaggaagtt cctccaagca atccaccaac tgaggagcgt
     2041 caagatggag cagaggaagc tgagtgacca agccaacacc ctggtggacc tttccaagat
     2101 gcagaacgtc atgtatgact taatcacaga actcaatgat cggagcgaag atctggagaa
     2161 acaaatcggc agtctggagt cgaagctgga gcacctcacc gccagcgtca attccctgcc
     2221 cctgctcatc gcggacaccc tgcgccagca gcagcggcag ttcctgtctg ccctcacgga
     2281 ggcccggggc gtcagcgtgg cagtgggcac cacccacacc ccactctccg acagcccaat
     2341 cggggtgcct ctactcggga gcagcaagag gagatgacag gaagcgacgc ctctggtagg
     2401 gcccttgcgg cacagttggt ggagaacaga cacccacgtt caatctcagg tcttcacgtg
     2461 gtggggggtg ggagctcaga tgcactgaag tagcccgcag tgaagccagc ccggaggagg
     2521 gtcccgcggg gggagggcat ggtgtcaggc ttgggggatg ggttcttcac cccggggtcc
     2581 tccagcccac ctgtctgcgt tccttctgtc taaggaagcc cctggatgac aaagtaaggg
     2641 agagccaccc acagcttttg ccaagacaga catgctttcc tgccatccct cgcacagtca
     2701 taaaacaaaa tttagactga aagaaaaata gacaaataaa aagccagact ttccatccaa
     2761 tattaatacc catataaacc tgtgtatttg caagcgtgtg cgtgtacaca cacacataca
     2821 catcccacag tcaacccagg tcttttctgg tttgcacctg gcccaaataa agagggacct
     2881 ggtaccttac cctgcacgca gtaggcactc tctaaatgca cgttgagttg gtctgaatcg
     2941 ggatgtgggc gctgtcagtt caggtggttt gccagtgtcg gccacgtcct gagcttcact
     3001 gaagaggcag gttgcttcaa acacaaaaca gggtgctttg ccctgggtat gcaccatgct
     3061 tgctctgaga tgaatgacaa gccagaattg gcattctgga gagataagca gccttctaaa
     3121 aataacagct tctgcagagt tttcatctta tatccaaaca agctgtgttc cactggaatg
     3181 catgatcagg tgtatgtgtg tgagggaagg ggggcgggat ctgtccctgc aagcacacac
     3241 atgcaccaac aggtgtgacc ccaggacacc tgcatgaata gaagtattgt caggggggtt
     3301 tgctcattga tatttatcca gcaacaggtt tacagcccca gatgttagga gcgcaaaggg
     3361 gtcaagtgcc tcacctgaga gctgggagaa gtgatggtga gtggcccagc tggtcctttc
     3421 tacctgacct aaaaccacct caaagtgtaa ggttatgagg ataaagggag attctaggga
     3481 accctgtggg taagataagg tgacagggat ttgtcagtat cctgttcctg ctgtgccacg
     3541 ttaatcttgg tgcagaaact attgtaatac atctcaaact ccaagggact ccagaaacat
     3601 ccagagccag cgtatgacag gcgttgtgag gagaggccat gggggtgcat tgatattttc
     3661 cgcactccat catctaacca tgcatgatgt ttgtgatgtg aaaaccatca tactaatcat
     3721 cacatttctc attctgaggt ctttgacgtc tgcttgtggg cacttaaatc atactgtagg
     3781 gaatatttca tctgtttagg gtaaaacaga agggtatcat ttgtggatgg ctgtcctgtt
     3841 gggtttcact ttgtacagga catcgccact tttccaaagg cagagtctag ctgtgaagac
     3901 ttttcctcta cagcactggg cctggtcttc taagggcaag ggaatcatca gacagcaaaa
     3961 tgtagaccac cctagaaagg ccactctttc aagaagatct ggtctcttgt tcaacctctt
     4021 cttatatctc ttttcattgc tgtgctcttc ccttgatgcc ctcattttta tcttgataac
     4081 tcctttgagc attttccttg gttgctttgc acaccataga tgccacactt gctgctggct
     4141 ttaacatttt tttgcttgtc cttttaacta tcgattatct aaaagatccc tctccttttt
     4201 tatgtcccag gaatggtgct cctgttttca gtgacagctg aacatataaa cagaccaata
     4261 agcagatgaa ataaccatgc agtttctttg tggcgttagt tcatttcaca aagaaatgaa
     4321 gtgaagagcg ctgacaggtc aacctgaaca tgccaatccc aatcatctaa cctacagccc
     4381 tcagttctta attcctggtc acccttccca ttcccccgta accctgtgat gtgtgtgtgt
     4441 gtgtgtgtgt gtgtgtgtgt gcacacaaat agggatttaa tctgaatttc aaacaaatgg
     4501 catgcaagat tccactgcca ctcctcctgc caaaaagtgt gtgtagactg tcattgaccc
     4561 atcactgtct gtgggtgact cttctttaac ccaccactaa tgctattcac ttaggtaaat
     4621 cctgatgacc tgtaacctag caacactagc aaagagagtg gttggagata tttccagtag
     4681 cagtagccac tggcatccta gaaacatatg ggcatttgta gcatgactgg acctattggt
     4741 agtgcaatag ctacgtatgg tttttatcct tggcgaaaga gtacttactc ttcggggaaa
     4801 aaaaaaaaaa gtgatcaaat ctgcatgttg atcctgcaat ggtaaatggg aggctgcttc
     4861 tctgtactgg tttttcagct ttatgtgggg aagttgccca ttctcctgca agtacaatca
     4921 acccttgatg acttaggtat tgattagggt gtagctcacg caggttttct tcctagagcc
     4981 catcttttgg ttaattccac tgagcctccg catcttagtc agatggggaa agggggctgg
     5041 tggattctcg tgccatgact tcctgttctg taatttcaag tttggtggtg gaggaggttt
     5101 aattatctac tcaagaattg gctatatgga aaaactatta attacagtaa cctcactcca
     5161 gtactgaact gattgagttc tgcccactgc tgcaaggatg acccagtggc agagccccta
     5221 ctataatcct tctgataact cggtgtcagg taaaagtact ctaatattcc ctaaaatatc
     5281 tagacacttg aattaaaaat acagagccac cccctcatcg cttaagccat attatagctt
     5341 catgtactgt aaagtcaggg atgtactgtg atactttaag accactaatc tcagcggaat
     5401 ttcaggacat agcatcagtt ggtaaattat agcagactag ggagtcactc ctccttagat
     5461 tgaagtccaa ataaaaatct gcatctttgg atcaaaggcc acatatgtgt gatcatcatc
     5521 gatacattta tcatgaagtg tctatgaact gctcttgcca tcctcataat atgtaacttc
     5581 atgacatcgt atctctagaa atgcttaatg caatgcaaaa gaataagagg ggtaaggccc
     5641 tgcatcacca ctaacctctg acctcagcaa gtaccagtgg cgtaacaaca gtctcataac
     5701 tgaagaggta gagaaaatgt gtatgcaagt aatttccaaa gtgctgagca agtgcaaact
     5761 gttgttattt attaaaggcc aagaagaaac agcattgaag aaaccatgat tttaatatat
     5821 aatatttgag gctttccccc ttagattttt gataatttct tgtgaataag tcatgatgga
     5881 agagaagaaa actagagatg cagaatcaga ataaataaaa ctctaacgct ggatccacat
     5941 ctttggccaa tgaatataac cacctcatac ctcaatttct ctatgcttaa aatgaaggta
     6001 acagttaata ttcttaagta caaagtactc aatagagttt aaaatgaaat cactattgcc
     6061 aacaacagca gcccagactg actctggcaa gtccacactt tgatgttgcc tctgaatgta
     6121 gtcaatagtt accaaaagta attcttacat atcaacctat gtgaaactag cagggagaag
     6181 tatgggatta gcacatagtc ccaggacctc tctccttcag agcatacctc aacaaacagt
     6241 gcaccccaaa ttaagaacca gtgtttcatc ccagaaccca tggtgttgct accatcacag
     6301 taccacaact gagacactat gaagtcattg cactaccagt aggttactgc tcttttaaag
     6361 ttactgcttt taaatcctaa agtacgtccc agttctacac agtcatccta cttccctgga
     6421 tgttgcttag aagcagatga aggctccatc agtggccatt tggctgcccc tattgactct
     6481 gcggcattcg gtttcagtac cttagacagc tatctggtgg cttcctggta ggcgggaaca
     6541 gccccttccc ttcccggcag tcagtcagct taatgacgcc ctggacagta tcccttcctt
     6601 ctctactgcc gccaaagtaa acactgtggg aacgggatca ttgataccac taagaaagga
     6661 atgttacagg gatagcaata ttaactgtct gcctctggca gtagaatata ggtgagcgct
     6721 cttcatcctg aaagcttgtg ccaggctgcg tgactagtta acagtaaact cctgtcagac
     6781 aagtaatatg tagattttta ctaaaataga ccgaagctta ttaaaagtac tcagtgcaat
     6841 ggtatatgaa tacatacaga tagagaaaaa aaataactgt gatctttttt tcttacacca
     6901 ttactggaaa tgcccaaacg tgaactggag ttcgctctga acaaaaccat tatcaaatca
     6961 tcaacatatg acctccaaat ctaggtgcca agtgccctgc cacagttgtt tacacacctg
     7021 agaaacgtgt tctggaagct gtactcttgg gcctggacca tgtgttgaaa caaacaaaag
     7081 agacgttgtg accaaccaag ctgatggagg aaaagcacaa aattcaacac caacctatag
     7141 ttcggatccc aaagagatgc tgaatttata gccaaaaaaa aaaaaaatta tatatatata
     7201 tatatataga gagagagaga gacaaagcaa atatcaatct gatcggaaca gccaacatcc
     7261 aagttcacag aagaaggaca gggaataaac aacattctct agctgtgtca tattgtctca
     7321 gtctttgaat ctcaactagg actgatccac cttcatcaga cacacttttt aatggcgcaa
     7381 caactcaatg ctggtcccag actctccatt ctgcactgac cagaagagaa caacaaaaga
     7441 gagcaacaga tgttaatgga ggaaatattt tcatggtgaa ctcagaaact gatgtgttta
     7501 tattcagaat cagatgagct tcaatatgaa tttgcatctt gcctctgtac tgcttgctat
     7561 tttttaatga taggacaaag tataacagtt tattttaaat atgaaatata ttgctatatt
     7621 ataaaatata ttgtaacttt caactaa
//
LOCUS       XM_032649330            6278 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium calcium-activated channel
            subfamily N member 3 (KCNN3), transcript variant X3, mRNA.
ACCESSION   XM_032649330
VERSION     XM_032649330.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6278
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6278
                     /gene="KCNN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762397"
     CDS             76..780
                     /gene="KCNN3"
                     /codon_start=1
                     /product="small conductance calcium-activated potassium
                     channel protein 3 isoform X3"
                     /protein_id="XP_032505221.1"
                     /db_xref="GeneID:116762397"
                     /translation="MWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAV
                     VARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRK
                     HQRKFLQAIHQLRSVKMEQRKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIG
                     SLESKLEHLTASVNSLPLLIADTLRQQQRQFLSALTEARGVSVAVGTTHTPLSDSPIG
                     VSSTSFPTPYTSSSSC"
     misc_feature    <76..225
                     /gene="KCNN3"
                     /note="Ion channel; Region: Ion_trans_2; pfam07885"
                     /db_xref="CDD:462301"
     misc_feature    265..489
                     /gene="KCNN3"
                     /note="Calmodulin binding domain; Region: CaMBD;
                     pfam02888"
                     /db_xref="CDD:460739"
     misc_feature    <388..>660
                     /gene="KCNN3"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 tctgacctat ggaactgtgg aagcgtttat gagtaccatg accagcagga cgtaactagt
       61 aactttctgg gtgccatgtg gctcatctct atcacattcc tttccattgg ttatggggat
      121 atggtgcccc acacatactg tgggaaaggt gtctgtcttc tcacgggcat tatgggtgcg
      181 ggctgtactg ccctggtggt ggccgtggtg gcccgaaagc tggaactcac caaagcagag
      241 aagcacgttc acaacttcat gatggacact cagctcacca aacggatcaa gaatgctgca
      301 gccaatgtcc ttcgggaaac gtggctaatc tataaacaca caaagctgct aaagaagatt
      361 gaccacgcca aagtcaggaa acaccagagg aagttcctcc aagcaatcca ccaactgagg
      421 agcgtcaaga tggagcagag gaagctgagt gaccaagcca acaccctggt ggacctttcc
      481 aagatgcaga acgtcatgta tgacttaatc acagaactca atgatcggag cgaagatctg
      541 gagaaacaaa tcggcagtct ggagtcgaag ctggagcacc tcaccgccag cgtcaattcc
      601 ctgcccctgc tcatcgcgga caccctgcgc cagcagcagc ggcagttcct gtctgccctc
      661 acggaggccc ggggcgtcag cgtggcagtg ggcaccaccc acaccccact ctccgacagc
      721 ccaatcgggg tcagctccac ctccttccca accccgtaca cgagttcaag cagttgctaa
      781 ataaaactcc ccacttcaga agcattaccc ataggtctta agatgcaaat caactctctc
      841 ctggtcgctt tgccatcaag gaacatgcag accagggaac gtaaagaaga gagaccgagc
      901 taattaacta actcatgttc attcagcgtg cttggtttga tatgccttga aaccagaaat
      961 ctgatctctg tttaggtgcc tctactcggg agcagcaaga ggagatgaca ggaagcgacg
     1021 cctctggtag ggcccttgcg gcacagttgg tggagaacag acacccacgt tcaatctcag
     1081 gtcttcacgt ggtggggggt gggagctcag atgcactgaa gtagcccgca gtgaagccag
     1141 cccggaggag ggtcccgcgg ggggagggca tggtgtcagg cttgggggat gggttcttca
     1201 ccccggggtc ctccagccca cctgtctgcg ttccttctgt ctaaggaagc ccctggatga
     1261 caaagtaagg gagagccacc cacagctttt gccaagacag acatgctttc ctgccatccc
     1321 tcgcacagtc ataaaacaaa atttagactg aaagaaaaat agacaaataa aaagccagac
     1381 tttccatcca atattaatac ccatataaac ctgtgtattt gcaagcgtgt gcgtgtacac
     1441 acacacatac acatcccaca gtcaacccag gtcttttctg gtttgcacct ggcccaaata
     1501 aagagggacc tggtacctta ccctgcacgc agtaggcact ctctaaatgc acgttgagtt
     1561 ggtctgaatc gggatgtggg cgctgtcagt tcaggtggtt tgccagtgtc ggccacgtcc
     1621 tgagcttcac tgaagaggca ggttgcttca aacacaaaac agggtgcttt gccctgggta
     1681 tgcaccatgc ttgctctgag atgaatgaca agccagaatt ggcattctgg agagataagc
     1741 agccttctaa aaataacagc ttctgcagag ttttcatctt atatccaaac aagctgtgtt
     1801 ccactggaat gcatgatcag gtgtatgtgt gtgagggaag gggggcggga tctgtccctg
     1861 caagcacaca catgcaccaa caggtgtgac cccaggacac ctgcatgaat agaagtattg
     1921 tcaggggggt ttgctcattg atatttatcc agcaacaggt ttacagcccc agatgttagg
     1981 agcgcaaagg ggtcaagtgc ctcacctgag agctgggaga agtgatggtg agtggcccag
     2041 ctggtccttt ctacctgacc taaaaccacc tcaaagtgta aggttatgag gataaaggga
     2101 gattctaggg aaccctgtgg gtaagataag gtgacaggga tttgtcagta tcctgttcct
     2161 gctgtgccac gttaatcttg gtgcagaaac tattgtaata catctcaaac tccaagggac
     2221 tccagaaaca tccagagcca gcgtatgaca ggcgttgtga ggagaggcca tgggggtgca
     2281 ttgatatttt ccgcactcca tcatctaacc atgcatgatg tttgtgatgt gaaaaccatc
     2341 atactaatca tcacatttct cattctgagg tctttgacgt ctgcttgtgg gcacttaaat
     2401 catactgtag ggaatatttc atctgtttag ggtaaaacag aagggtatca tttgtggatg
     2461 gctgtcctgt tgggtttcac tttgtacagg acatcgccac ttttccaaag gcagagtcta
     2521 gctgtgaaga cttttcctct acagcactgg gcctggtctt ctaagggcaa gggaatcatc
     2581 agacagcaaa atgtagacca ccctagaaag gccactcttt caagaagatc tggtctcttg
     2641 ttcaacctct tcttatatct cttttcattg ctgtgctctt cccttgatgc cctcattttt
     2701 atcttgataa ctcctttgag cattttcctt ggttgctttg cacaccatag atgccacact
     2761 tgctgctggc tttaacattt ttttgcttgt ccttttaact atcgattatc taaaagatcc
     2821 ctctcctttt ttatgtccca ggaatggtgc tcctgttttc agtgacagct gaacatataa
     2881 acagaccaat aagcagatga aataaccatg cagtttcttt gtggcgttag ttcatttcac
     2941 aaagaaatga agtgaagagc gctgacaggt caacctgaac atgccaatcc caatcatcta
     3001 acctacagcc ctcagttctt aattcctggt cacccttccc attcccccgt aaccctgtga
     3061 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgcacacaaa tagggattta atctgaattt
     3121 caaacaaatg gcatgcaaga ttccactgcc actcctcctg ccaaaaagtg tgtgtagact
     3181 gtcattgacc catcactgtc tgtgggtgac tcttctttaa cccaccacta atgctattca
     3241 cttaggtaaa tcctgatgac ctgtaaccta gcaacactag caaagagagt ggttggagat
     3301 atttccagta gcagtagcca ctggcatcct agaaacatat gggcatttgt agcatgactg
     3361 gacctattgg tagtgcaata gctacgtatg gtttttatcc ttggcgaaag agtacttact
     3421 cttcggggaa aaaaaaaaaa agtgatcaaa tctgcatgtt gatcctgcaa tggtaaatgg
     3481 gaggctgctt ctctgtactg gtttttcagc tttatgtggg gaagttgccc attctcctgc
     3541 aagtacaatc aacccttgat gacttaggta ttgattaggg tgtagctcac gcaggttttc
     3601 ttcctagagc ccatcttttg gttaattcca ctgagcctcc gcatcttagt cagatgggga
     3661 aagggggctg gtggattctc gtgccatgac ttcctgttct gtaatttcaa gtttggtggt
     3721 ggaggaggtt taattatcta ctcaagaatt ggctatatgg aaaaactatt aattacagta
     3781 acctcactcc agtactgaac tgattgagtt ctgcccactg ctgcaaggat gacccagtgg
     3841 cagagcccct actataatcc ttctgataac tcggtgtcag gtaaaagtac tctaatattc
     3901 cctaaaatat ctagacactt gaattaaaaa tacagagcca ccccctcatc gcttaagcca
     3961 tattatagct tcatgtactg taaagtcagg gatgtactgt gatactttaa gaccactaat
     4021 ctcagcggaa tttcaggaca tagcatcagt tggtaaatta tagcagacta gggagtcact
     4081 cctccttaga ttgaagtcca aataaaaatc tgcatctttg gatcaaaggc cacatatgtg
     4141 tgatcatcat cgatacattt atcatgaagt gtctatgaac tgctcttgcc atcctcataa
     4201 tatgtaactt catgacatcg tatctctaga aatgcttaat gcaatgcaaa agaataagag
     4261 gggtaaggcc ctgcatcacc actaacctct gacctcagca agtaccagtg gcgtaacaac
     4321 agtctcataa ctgaagaggt agagaaaatg tgtatgcaag taatttccaa agtgctgagc
     4381 aagtgcaaac tgttgttatt tattaaaggc caagaagaaa cagcattgaa gaaaccatga
     4441 ttttaatata taatatttga ggctttcccc cttagatttt tgataatttc ttgtgaataa
     4501 gtcatgatgg aagagaagaa aactagagat gcagaatcag aataaataaa actctaacgc
     4561 tggatccaca tctttggcca atgaatataa ccacctcata cctcaatttc tctatgctta
     4621 aaatgaaggt aacagttaat attcttaagt acaaagtact caatagagtt taaaatgaaa
     4681 tcactattgc caacaacagc agcccagact gactctggca agtccacact ttgatgttgc
     4741 ctctgaatgt agtcaatagt taccaaaagt aattcttaca tatcaaccta tgtgaaacta
     4801 gcagggagaa gtatgggatt agcacatagt cccaggacct ctctccttca gagcatacct
     4861 caacaaacag tgcaccccaa attaagaacc agtgtttcat cccagaaccc atggtgttgc
     4921 taccatcaca gtaccacaac tgagacacta tgaagtcatt gcactaccag taggttactg
     4981 ctcttttaaa gttactgctt ttaaatccta aagtacgtcc cagttctaca cagtcatcct
     5041 acttccctgg atgttgctta gaagcagatg aaggctccat cagtggccat ttggctgccc
     5101 ctattgactc tgcggcattc ggtttcagta ccttagacag ctatctggtg gcttcctggt
     5161 aggcgggaac agccccttcc cttcccggca gtcagtcagc ttaatgacgc cctggacagt
     5221 atcccttcct tctctactgc cgccaaagta aacactgtgg gaacgggatc attgatacca
     5281 ctaagaaagg aatgttacag ggatagcaat attaactgtc tgcctctggc agtagaatat
     5341 aggtgagcgc tcttcatcct gaaagcttgt gccaggctgc gtgactagtt aacagtaaac
     5401 tcctgtcaga caagtaatat gtagattttt actaaaatag accgaagctt attaaaagta
     5461 ctcagtgcaa tggtatatga atacatacag atagagaaaa aaaataactg tgatcttttt
     5521 ttcttacacc attactggaa atgcccaaac gtgaactgga gttcgctctg aacaaaacca
     5581 ttatcaaatc atcaacatat gacctccaaa tctaggtgcc aagtgccctg ccacagttgt
     5641 ttacacacct gagaaacgtg ttctggaagc tgtactcttg ggcctggacc atgtgttgaa
     5701 acaaacaaaa gagacgttgt gaccaaccaa gctgatggag gaaaagcaca aaattcaaca
     5761 ccaacctata gttcggatcc caaagagatg ctgaatttat agccaaaaaa aaaaaaaatt
     5821 atatatatat atatatatag agagagagag agacaaagca aatatcaatc tgatcggaac
     5881 agccaacatc caagttcaca gaagaaggac agggaataaa caacattctc tagctgtgtc
     5941 atattgtctc agtctttgaa tctcaactag gactgatcca ccttcatcag acacactttt
     6001 taatggcgca acaactcaat gctggtccca gactctccat tctgcactga ccagaagaga
     6061 acaacaaaag agagcaacag atgttaatgg aggaaatatt ttcatggtga actcagaaac
     6121 tgatgtgttt atattcagaa tcagatgagc ttcaatatga atttgcatct tgcctctgta
     6181 ctgcttgcta ttttttaatg ataggacaaa gtataacagt ttattttaaa tatgaaatat
     6241 attgctatat tataaaatat attgtaactt tcaactaa
//
LOCUS       XM_032649339            1583 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphomevalonate kinase (PMVK), mRNA.
ACCESSION   XM_032649339
VERSION     XM_032649339.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1583
                     /gene="PMVK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762416"
     CDS             599..1177
                     /gene="PMVK"
                     /codon_start=1
                     /product="phosphomevalonate kinase"
                     /protein_id="XP_032505230.1"
                     /db_xref="GeneID:116762416"
                     /translation="MAPLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLS
                     GPLKKQYAQEHDLDFQRLLDASTYKEPFRRDMIRWGEEKRQADPGFFCRKIVEGVSQP
                     VWLVSDTRRVSDIQWFREAYGAVTQTVRVVATEQSRQQRGWVFTPGVDDAESECGLDN
                     VGAFDWVIENHGDEQHLEEQLEHLIEFVRSRL"
     misc_feature    638..967
                     /gene="PMVK"
                     /note="Phosphomevalonate kinase; Region: P-mevalo_kinase;
                     pfam04275"
                     /db_xref="CDD:461247"
ORIGIN      
        1 tcatgctccc tttttaagct ctcttgaaat tgcctgtctc ctatgagaat aaatgctgag
       61 agtagtctcc gtttggttta ttgttgcatc tctagcagta cccggcacgt tttagacatt
      121 taaatacatg ttgaatgaat gaatgaatgg acttctctcc atcatcttct catagactca
      181 gactccccct ctcttctttc cctgttgtac tacttcctta caaccctacc gtattctgtc
      241 cttcatctgc caggctccgt tgcccctgaa gcagtgatgg tcaaacacat gaggactgat
      301 tcacaagtca catttacact gaccactcaa gcagagggaa atgcttgggt cagttggaca
      361 atgaccatgg gaagatagac tggaaccaga gcatggagct gaagcaaggg ctttaattta
      421 aagtcacgga agcacgtgtg cgggctgaca gtcctctcca cggccatgaa gaagacgggg
      481 gcggaacccc tccttgttgc cactccaccg agtggccgcg tccattctgg gccaggtggc
      541 ctgatttaag ggatagggaa aagtgtcagt tttagggatc tcaaagggtg gcggtcccat
      601 ggccccgctg ggaggcgccc cgcggctggt gctgctgttc agcgggaaga ggaaatccgg
      661 gaaggacttc gtgaccgagg cgctgcagag cagacttgga gctgacgtgt gtgctgtcct
      721 ccggctctct ggtccactca agaagcagta tgctcaggag cacgacttag acttccagag
      781 actcctggat gccagcacct acaaggagcc ctttcggagg gacatgatcc gctgggggga
      841 ggagaagcgc caggccgacc caggcttctt ctgcaggaag atcgtggagg gcgtctccca
      901 gcccgtctgg ctggtgagtg acacacggag ggtgtctgac atccagtggt ttcgggaggc
      961 ctacggggct gtgacgcaga cggtccgcgt ggtggccaca gagcagagcc gacagcagcg
     1021 gggctgggtg ttcacaccag gggtggatga tgctgagtca gaatgtggcc tggacaacgt
     1081 cggggccttc gattgggtca ttgagaacca cggagatgag cagcacctgg aggagcagtt
     1141 ggagcacctg atagaatttg tccgctccag actttagctg gcaggctcta ggagcgagcg
     1201 ggggctgcca gggtgagggg ggctccctgt gctgaacatg tggttgctga tgctggccga
     1261 ggttggggga gcagacagag ggcctgtgtc aaggtttctg ggggctggta gatgtcagac
     1321 aagttaagaa accaccaggg acctcatttc ttcgtggaaa ggacagccct acctctttac
     1381 aaggagactt aaagggcaga gaggggtgag ttggctgtgc ttgaagcaga agcatcacca
     1441 tctccatggg tgccagacct gtcagcctgt ggtggccttg cttccctgac tggatgcttt
     1501 cagccccttg ttctcggcaa gagcctgggg ctccccaatg tggatactaa taaaccttct
     1561 tggagcacct gctcagagct gga
//
LOCUS       XM_032649349            2124 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus POU class 3 homeobox 1 (POU3F1), mRNA.
ACCESSION   XM_032649349
VERSION     XM_032649349.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2124
                     /gene="POU3F1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 31 Proteins, and 5%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762426"
     CDS             50..1393
                     /gene="POU3F1"
                     /codon_start=1
                     /product="POU domain, class 3, transcription factor 1"
                     /protein_id="XP_032505240.1"
                     /db_xref="GeneID:116762426"
                     /translation="MATTAQYLPRGPGGGAGGTGPLMHPDAAAAAAAAAAAERLHAGA
                     AYREVQKLMHHEWLGAGAGHPVGLAHPQWLPTGGGGGGDWAGGPHLEHGKAGGGSAGR
                     ADDGGGGGGFHARLVHQGAAHAGAAWAQGGTAHHLGPAMSPSPGAGGGHQPQPLGLYA
                     QAAYPGGGGSGLAGMLAAGGGGAGPGLHHALHEDGHEAQLEPSPPPHLGAHGHAHGHA
                     HASGLHAAAAHLHPGAGGGGSSVGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADV
                     GLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNMDKIA
                     AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQ
                     KEKRMTPAAGAGHPPMDDVYAPGELGPGGGGASPPSAPPPAALHHHHHTLPGSVQ"
     misc_feature    788..1012
                     /gene="POU3F1"
                     /note="Found in Pit-Oct-Unc transcription factors; Region:
                     POU; smart00352"
                     /db_xref="CDD:197673"
     misc_feature    1067..1237
                     /gene="POU3F1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 ggagcggagc ggcggcggcg gcgcggcgcg gcgcggggcg cggggcggca tggccaccac
       61 cgcgcagtac ttgccgcggg gccccggcgg cggagccggg ggcacgggac cgcttatgca
      121 tccggatgcc gcggcggcag cggcagcggc ggcggcagcc gagcggctgc acgcgggggc
      181 cgcgtaccgc gaagtgcaga agctgatgca ccacgagtgg ctgggcgcgg gcgcgggcca
      241 ccccgtgggc ctagcgcacc cgcagtggct acccacggga ggaggcggcg gcggcgactg
      301 ggcaggcggc ccgcacctgg aacacggcaa ggcgggcggc ggcagcgccg gccgagccga
      361 cgacggtggc ggcggcggcg gtttccacgc gcgcctggtg caccaggggg cggcccacgc
      421 gggcgcggct tgggcgcagg gcggcacggc acaccacttg ggcccggcca tgtcgccgtc
      481 gccgggggcc ggcgggggcc accagcccca accgctcggg ctgtacgcac aggcggccta
      541 cccggggggc ggcggcagcg gcctggccgg aatgctggcg gcgggcggcg gcggcgcggg
      601 gccgggcctg caccacgcgc tgcacgagga cggccacgag gctcagctgg agccgtcgcc
      661 tccgccgcac ctgggcgccc acggacacgc acacggacat gcacacgcca gcggcctgca
      721 cgcggcagcg gcgcacctgc acccgggcgc gggcggcggt ggctcgtcgg tgggcgagca
      781 ctcggacgag gacgcgccca gctcggacga cctggagcag ttcgccaagc agttcaagca
      841 gcggcgcatc aagctgggct tcacgcaggc cgacgtgggg ctggcactgg gcacgctgta
      901 cggtaacgtg ttctcgcaga ccaccatctg ccgcttcgag gccctgcagc tgagcttcaa
      961 gaacatgtgc aagctcaagc cgctgctcaa caagtggctg gaggagaccg actcgtccag
     1021 cggcagcccc accaacatgg acaagatcgc ggcgcagggc cgcaagcgca agaagcgcac
     1081 gtccatcgag gtgggggtca aaggcgcgct cgagagccac tttctcaagt gccccaagcc
     1141 ctcggcgcat gagatcacag gcttggccga cagcctgcag ctggagaagg aggtggtgcg
     1201 cgtctggttc tgcaaccggc ggcagaagga gaagcgcatg accccggcgg ccggcgccgg
     1261 ccacccgccc atggacgacg tgtacgcgcc cggcgagctg gggccgggcg ggggcggtgc
     1321 gtcgccgccc tcggcgcccc cgccggccgc gctgcaccac caccaccaca cactgcccgg
     1381 ctccgtgcag tgaccccgcg ggccgggccc cccgccggtg cgcggcgagg cgccgcgcgg
     1441 cctgaactct ttttgttcgg ttgctttgga ttttacaaaa agcccagaaa ctttcgaata
     1501 aaaccaaaca cccggacgac cctctcctgc gagcggcgaa gacggccgat aggctgcgtc
     1561 gcccgagccc cgagagagag gagcgaagat ccggaacgcg ccaactcacc ccgggcatcc
     1621 tgcccgccgc ctgctccctg cccccaaccc ctcgacgacc cccgcccctg cccccccggg
     1681 ctgttcgggg ccggatcccg gcagcggcct ccccacagcg acaggtaacg cggtacgggg
     1741 ttagggatta cccgggagag aggacggaga ggagagttcc ccatccctct ccccggcgcg
     1801 gattcccgag cctgagtgtc gagggtgggg gactgtcact ttattcgctc cacgcctctt
     1861 ctctctcata aggatgcgcc ccatccccct tacctttcct ccgggcttgg ttttttacag
     1921 tttttattta ttcacggagc ctctcggctc ctggggtcct tctaactccg cccgcgccct
     1981 taatttaaat cgctgtatac tgtatttatc ggggccccgg aggggaggcc gcgagagccg
     2041 cgtctgtgta taaaagcagg aaatagccaa agctttaatc tagcctaatt tattttttcc
     2101 ccttaccttc ccctacccta cccc
//
LOCUS       XM_032649358            1401 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus bolA family member 1 (BOLA1), mRNA.
ACCESSION   XM_032649358
VERSION     XM_032649358.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1401
                     /gene="BOLA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762436"
     CDS             336..785
                     /gene="BOLA1"
                     /codon_start=1
                     /product="bolA-like protein 1"
                     /protein_id="XP_032505249.1"
                     /db_xref="GeneID:116762436"
                     /translation="MGAAVAKTECKLMLSGQLVGSLFSMAGRVCVSRGSARSGAIGPV
                     EAAIRTKLEQALNPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVH
                     AALSEELAGPVHALAIQARTPAQWRENPQLDTSPPCLGGSKKTRGTP"
     misc_feature    462..719
                     /gene="BOLA1"
                     /note="DNA-binding global transcriptional regulator BolA,
                     affects cell shape, cell division and biofilm formation
                     [Transcription, Signal transduction mechanisms]; Region:
                     BolA; COG0271"
                     /db_xref="CDD:440041"
ORIGIN      
        1 caaggataac caatttgatg taatttataa gagctaccgg gaggggtgaa gcgaagtggt
       61 ttgattggct aaaagctgag tccgatcgaa cagccaatag gaaagcggaa agcagactct
      121 tcgtttgcat cttgtactac gaggaaatga cggccttggt tcagagcctc ccacgacctc
      181 acgagtcggg ggaagtagag actacagttc ccgagaaccc tcagggaacc acgtggtgcc
      241 ggcccggtct atcgcgtagc gaggactcca tttcccagcg tgcctcagga cgcgaagtct
      301 acgtttcgct cggaacgtct ggagtccggc gctgaatggg agctgcggta gcgaagactg
      361 agtgcaagct gatgctgagt gggcagctgg tcggaagcct gttctccatg gctggccgcg
      421 tctgtgtgtc ccggggcagc gccagatcag gggccatcgg tcccgtcgag gccgccattc
      481 gcacaaagtt ggagcaggcg ctgaaccccg aggtcctgga gctgcgtaat gagagcggcg
      541 gccacgcggt cccaccaggc agtgaaaccc atttccgcgt ggccgtggtg agctctcgtt
      601 tcgagggact gagccccctg caacggcatc ggctggtcca cgcggcgctg tcagaagaac
      661 tggctgggcc ggtccacgcc ctggccatac aagcgcggac ccccgcccag tggagggaga
      721 accctcaact ggacacgagc cccccctgcc tgggcgggag caagaaaact cgaggaactc
      781 cctgaaccct gagagagagg gaggactggg atcgaaacgg gttgggtgag aataaactac
      841 tggagccttc ttcccttcaa tacagtctgg tatttgtaag agttgaggac ctgggcccca
      901 ttcaaccggc atatacaggt tctctggaga cagcagttca tttcacgtca aggtcaacct
      961 aaggaaagca tacaatcact cactactgct cttgccctgg actattaagg aaaagctgcc
     1021 cagttgtttc gtgttaaatt gtgacttaag gaaccaccag accttatgag ttgcaagtaa
     1081 tcctgtacat taaaagagaa attatcatat gaggtgaatt gctgtgttgt taaaggcctg
     1141 ttgaaccagt gctacagatg ttcttgggag aagaaagata cttgaagcct agcatagtca
     1201 ggaagggctt cattaaacca gaaaggaaag gaaagttgtt gcaggcaggg ggaagaaccc
     1261 aagcaaaggc atggaagctg gactgggcag agagttattg gacaagacag cagttacaga
     1321 cacatttgaa cttcagactt ggggaatgtt tggctttcta tcaacctgtc catttccaaa
     1381 aggatttaca tttgtttgtg a
//
LOCUS       XM_032649366             629 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus histone H2A type 2-B (LOC116762447),
            mRNA.
ACCESSION   XM_032649366
VERSION     XM_032649366.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..629
                     /gene="LOC116762447"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 180 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762447"
     CDS             44..436
                     /gene="LOC116762447"
                     /codon_start=1
                     /product="histone H2A type 2-B"
                     /protein_id="XP_032505257.1"
                     /db_xref="GeneID:116762447"
                     /translation="MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERV
                     GAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVT
                     IAQGGVLPNIQAVLLPKKTESHKPGKNK"
     misc_feature    44..433
                     /gene="LOC116762447"
                     /note="histone H2A; Provisional; Region: PTZ00017"
                     /db_xref="CDD:185399"
ORIGIN      
        1 ccttctcttt gaaaaagaag ctgtaactgc atttttagcc gtaatgtcag gacgcggaaa
       61 gcagggaggc aaagctcggg ccaaggccaa gtcgcgctcg tcccgcgctg gccttcagtt
      121 ccccgtgggg cgagtgcacc gcctgctgcg caaaggcaac tacgccgagc gagtgggggc
      181 cggcgcgcca gtgtacctgg cggctgtgct ggagtacctg acagcggaaa tcctggagct
      241 ggccggcaac gcggcccgag acaataagaa gacgcgcatc atccctcgcc atttgcaact
      301 agccgtgaga aatgatgaag agctcaacaa gttactcggg ggtgtcacaa ttgcccaggg
      361 cggcgtcttg cccaatatcc aggcagtctt gttgcccaag aaaacggaga gtcacaagcc
      421 tggcaagaat aagtaattaa gaggcttgac accaacccca ctcaccccaa aggctctttt
      481 aagagccacc aaagtgtcaa atgaagggct gatcacggaa cagcgcatta gctctttttt
      541 tgaaaacttg ggtggctcta aaaagagcct ttggtctttg gttcactttg tcgggattta
      601 tttgcttttg gctttgtggc tttcagttt
//
LOCUS       XM_032649382             471 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus histone H2A type 2-C (LOC116762450),
            mRNA.
ACCESSION   XM_032649382
VERSION     XM_032649382.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..471
                     /gene="LOC116762450"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 160 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762450"
     CDS             61..450
                     /gene="LOC116762450"
                     /codon_start=1
                     /product="histone H2A type 2-C"
                     /protein_id="XP_032505273.1"
                     /db_xref="GeneID:116762450"
                     /translation="MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERV
                     GAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVT
                     IAQGGVLPNIQAVLLPKKTESHKAKSK"
     misc_feature    61..447
                     /gene="LOC116762450"
                     /note="histone H2A; Provisional; Region: PTZ00017"
                     /db_xref="CDD:185399"
ORIGIN      
        1 ctttcaatcc tgtttgttgc gagaatctga gctccaggcc ttgtagcatt attttcagtt
       61 atgtctggcc gcggaaagca aggaggcaag gcccgcgcca aggctaagtc gcgctcgtcc
      121 cgcgcaggtc tgcagttccc ggtgggacga gtgcaccgcc tgctacgcaa aggcaactac
      181 gccgagcggg tgggggccgg cgcgcccgtc tacatggcgg cagtcctcga gtacctgacc
      241 gccgaaatcc tggagctggc gggcaacgcg gcccgagaca acaagaagac gcgcatcatc
      301 cctcgtcacc tgcagctggc catccgcaac gacgaggaac tgaataagct gttgggcaaa
      361 gtcaccatcg cccagggtgg cgttttgccc aacatccagg ccgttctatt accaaagaaa
      421 actgaaagcc acaaagccaa aagcaaataa atcccgacaa agtgaaccaa a
//
LOCUS       XM_032649394            3590 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquilin 4 (UBQLN4), mRNA.
ACCESSION   XM_032649394
VERSION     XM_032649394.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3590
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3590
                     /gene="UBQLN4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 long SRA reads, 23
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762456"
     CDS             93..1898
                     /gene="UBQLN4"
                     /codon_start=1
                     /product="ubiquilin-4"
                     /protein_id="XP_032505285.1"
                     /db_xref="GeneID:116762456"
                     /translation="MAEPSGAETRPPIRVTVKTPKDKEEIVICDRASVKEFKEEISRR
                     FKAQQDQLVLIFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQKVQDPATATASSPSTP
                     DPASAPSTTPASPATSAQPSTSGSATSDTGSGSRRSSGGGTSPGTGEGPPSATASILS
                     GFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHM
                     IMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIP
                     GGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWS
                     PSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISE
                     NPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQ
                     MQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGMSRTPASSTGSNAG
                     SAPEAPTSLPAPPATSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQL
                     NSMGFINREANLQALIATGGDINAAIERLLGSQLS"
     misc_feature    123..341
                     /gene="UBQLN4"
                     /note="ubiquitin-like (Ubl) domain found in eukaryotic
                     protein linking integrin-associated protein (IAP, also
                     known as CD47) with cytoskeleton (PLIC) proteins; Region:
                     Ubl_PLICs; cd01808"
                     /db_xref="CDD:340506"
     misc_feature    129..>965
                     /gene="UBQLN4"
                     /note="UV excision repair protein Rad23; Region: rad23;
                     TIGR00601"
                     /db_xref="CDD:273167"
     misc_feature    order(144..146,255..272,318..329,333..335,339..341)
                     /gene="UBQLN4"
                     /note="Pru interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340506"
     misc_feature    order(234..236,243..245,255..257,261..272,276..278,
                     327..329,333..341)
                     /gene="UBQLN4"
                     /note="putative S5a binding site; other site"
                     /db_xref="CDD:340506"
     misc_feature    1269..>1364
                     /gene="UBQLN4"
                     /note="Heat shock chaperonin-binding motif; Region: STI1;
                     smart00727"
                     /db_xref="CDD:128966"
     misc_feature    1764..1883
                     /gene="UBQLN4"
                     /note="UBA domain of eukaryotic protein linking
                     integrin-associated protein (IAP, also known as CD47) with
                     cytoskeleton (PLIC) proteins; Region: UBA_PLICs; cd14399"
                     /db_xref="CDD:270582"
     misc_feature    order(1794..1811,1857..1859,1866..1874,1878..1883)
                     /gene="UBQLN4"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270582"
ORIGIN      
        1 tggaggcgcc ggagccgagc ccggacggcc ggccgggcgg ggagaaggag gagccggggc
       61 gggctggcgg gcggccgggt ggcggcggcg gcatggcgga gccgagcggg gccgagacga
      121 ggccccccat tcgggtcacc gtcaagaccc ccaaggacaa ggaggaaatt gtgatctgcg
      181 atcgagcctc ggtcaaagag ttcaaagagg aaatctcccg gagatttaag gctcagcagg
      241 atcagctggt cctgatcttc gcaggcaaga tcctcaagga tggggacaca ctgaaccagc
      301 atgggatcaa ggatgggctc actgtccatc tggtcatcaa gacccctcag aaggttcaag
      361 atccggctac tgccactgct tcttcccctt ccactccaga cccagcctca gcaccctcca
      421 ccacgcctgc ttcacccgcc acttctgccc agccctccac ttctggcagt gccacttcgg
      481 atactggcag tggaagccga aggagcagtg gcgggggtac ctccccaggg actggggagg
      541 gacctcccag tgccactgca tccatactct ctggctttgg gggcatcctg ggcctgggca
      601 gcctgggcct gggctctgcc aacttcatgg agctgcagca gcagatgcag aggcagctga
      661 tgtccaatcc tgagatgctg tcgcagatca tggagaaccc cctggtccag gacatgatgt
      721 ctaaccccga cctgatgcgc cacatgatca tggccaaccc ccagatgcag cagctgatgg
      781 agcggaaccc cgagatcagc catatgctca acaaccctga gctcatgagg cagacgatgg
      841 agcttgctcg gaatccagcc atgatgcagg agatgatgcg gaaccaggac cgggccctaa
      901 gcaacctgga gagcatccct ggagggtata atgccctccg ccgcatgtac acggacatcc
      961 aggagcccat gtttagtgct gcccgggaac agtttggcaa caatcccttc tcttccctgg
     1021 ccgggaactc cgacagctca tcctcccagc ctctgcggac tgagaatcga gagcccctcc
     1081 ctaacccctg gagcccctcg ccccccacct cccaggcccc cgggtccggt ggggagggca
     1141 ccggaggatc ggggaccagc caggtgcacc cgacagtctc gaaccccttt gggatcaatg
     1201 cggctagcct ggggtcaggg atgttcaaca gcccggaaat gcaggccctc ctccagcaga
     1261 tctctgagaa cccccagctg atgcagaatg tgatctcagc cccctacatg cgcagcatga
     1321 tgcaaacgct tgcccagaac cccgactttg ctgctcagat gatggtgaac gtgccgctct
     1381 tcgcggggaa cccccagctg caggagcagc tccgcctgca gctcccagtc ttcctgcagc
     1441 agatgcagaa cccggagtca ctctccattc ttaccaatcc ccgagccatg caggcgctgc
     1501 tgcagatcca gcagggactg cagaccttgc agaccgaggc ccccggactg gtacccagcc
     1561 tcggctcttt tgggatgtcc cggaccccag cctcctctac aggcagcaac gctgggtctg
     1621 cgcctgaggc ccccacctcc ttgccagccc cgccagccac atcctctcca acaggggcct
     1681 ccagtgctca gcagcagctc atgcagcaga tgatccagct tttggctgga agtgggaact
     1741 cacaggtgca gacgccagaa gtgagatttc agcagcagct ggagcagctc aactccatgg
     1801 gcttcatcaa tcgtgaggcc aacctgcagg ccctgatcgc cacaggaggg gacatcaacg
     1861 cagctatcga gagactcctg ggctctcagc tgtcctaatc cctcggcccg tgcctcctgc
     1921 ctgtcccgtc cctcgatgcc agcgtttggt tccgaccctc tgcagcttgt catcccttct
     1981 gtcttctccc ttgtcctctc cagacggcag ggtgacttta gaggcgtggg ccccagcccc
     2041 gtagctctga gaattccagt tttacttctg cacctcttgt agaaccttct ctcctggtcc
     2101 tgctctagca gagctattta aacagttctc acagttttgt tgattggccc ctcctccttg
     2161 gccctccccg ccttcacctt tgcaaccttc agacttctca gtggcagtgc agagctgaag
     2221 gaggaaccga ctctctgctt tactggaaca gggtcttcca tctgtaccac tagggttttg
     2281 cttgtcttat gtttactttt ggtaactctt ccttctttct ctcccccatc ccctcccacc
     2341 tctagcctaa ccaatgctag acttccatgc tctgaaggag gggcaggtga aacaggctgt
     2401 gattttcctc ctcaccccct gttctgttca cttcacccag cactttttca tggggtctgt
     2461 tgggacttcc agaggaagga agatgcctgt tctccccgtc tgaagggaga agtgagacac
     2521 agccctttgg agcacgaatt aacaggccct ggaccagccc aatgagggga ggagggaatg
     2581 agattttctg gaggaaggca atcagggaaa gagcctgagt agaggacttg gaagttggaa
     2641 ctgacagtta gggaatggaa gaactaatag ttcttttagg ccggagagtc caggctcagg
     2701 cctggcaaag gagacttaag agatgttaac ggaatttgag tgggagaaaa gggctcaatg
     2761 aagctaaaca atacggctca caagggctta tgttggttcc atttccgcaa acacacatgc
     2821 ttatatatat acacacacac ttccatgaac ccaggacctg tgtctccagg taccagtaat
     2881 ttaagctccc ctcaaaagac atgaagagga ttggggtctg tcttagcagt gggtgtgtgg
     2941 gggtgggtgg gtgcatgcat gcaagcacag catgtgagtt gagtgggagg gtggatccct
     3001 tgtcgatttc tggtttagag ttttctccca ccagagagaa gtaggcaaaa gggccagtct
     3061 aggtcaggaa taaatacagc ctggagagct agatcccctg ggcttctgga tactgcgtaa
     3121 gccaagggta gtgtgggtac ctcttctgaa gctgtcaggg ctgtgaccag cacccttatt
     3181 acccctccct tcattgcttc gggaaatagt aggggaggag tctttccctc tagaacccct
     3241 ggcctttggc gtcttagctc ctgccctttg agttttcact gtttccctcc aggccagaaa
     3301 gttctatttg aggaaggaaa ggagagggca gcaatgatgc ctttgatctg gaattggaca
     3361 ttgctctatt ggagcacaga ggaggctcgt atcacctcct ctatctgcta cttagcccag
     3421 ctgcttggag gacccattgc tgggaatatg gaggcaagag gaacagaatt ttctccaagt
     3481 gggaaagggt ctcaagcagt ccagagagga tgtctgtgtg gctttccctc cctacctccc
     3541 ccaactccca cactggcctt tgtaaataaa tggtgtggtc tttgttgtga
//
LOCUS       XM_032649408            4436 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 24-dehydrocholesterol reductase (DHCR24),
            transcript variant X1, mRNA.
ACCESSION   XM_032649408
VERSION     XM_032649408.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4436
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4436
                     /gene="DHCR24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 25 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762463"
     CDS             116..1669
                     /gene="DHCR24"
                     /codon_start=1
                     /product="delta(24)-sterol reductase isoform X1"
                     /protein_id="XP_032505299.1"
                     /db_xref="GeneID:116762463"
                     /translation="MEPAVSLAVCALLFLLWVRVKGLEFVLIHQRWVFVCLFLLPLSL
                     IFDIYYYVRAWVVFKLSSAPRLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSL
                     RVGKYKKTHKNIMINLMDILEVDTKKQQIVRVEPLVTMGQVTALLTSIGWTLPVLPEL
                     DDLTVGGLIMGTGIESSSHKYGLFQHICTAYELVLADGSFVRCTPSENSDLFYAVPWS
                     CGTLGFLVAAEIRIIPAKKYVKLRFEPVCGLEAICDRFTRESQRQENHFVEGLLYSLE
                     EAVIMTGVMTDEAEPGKLNSIGNYYKPWFFKHVENYLKTNCEGLEYIPLRHYYHRHTR
                     SIFWELQDIIPFGNNPVFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPM
                     KCLPQALHTFHSDIHVYPIWLCPFILPSQPGLVHPKGNEAELYVDIGAYGEPRVKHFE
                     ARSCMRQLEKFVRSVHGFQMLYADCYMDREEFWEMFDGSLYHRLRKQLGCQDAFPEVY
                     DKICKAARH"
     misc_feature    <455..727
                     /gene="DHCR24"
                     /note="FAD binding domain; Region: FAD_binding_4;
                     pfam01565"
                     /db_xref="CDD:426326"
     misc_feature    458..>1312
                     /gene="DHCR24"
                     /note="sugar 1,4-lactone oxidases; Region: FAD_lactone_ox;
                     TIGR01678"
                     /db_xref="CDD:273751"
ORIGIN      
        1 tcgcggggag cgggccgcgg gcagcagcga gcgcaggccg gcgaagagcg ggtggcggtg
       61 accagcggcg cgagccggca tcccctcccc cgcgcggtga gccgccggct ccaccatgga
      121 gcccgccgtg tcgctggcag tgtgcgctct gctcttcctg ctctgggtcc gcgtgaaggg
      181 gctggagttc gtgctcatcc accagcgctg ggtgttcgtg tgcctctttc tcctgccgct
      241 ctcgctcatc ttcgacatct actactatgt gcgcgcctgg gtggtgttca agctcagcag
      301 cgcgccgcgg ctgcacgagc agcgcgtgcg ggacatccag aagcaggtac gggaatggaa
      361 ggagcagggc agcaagacct tcatgtgtac agggcgccct ggctggctta ccgtctcact
      421 gcgggttggg aagtacaaga agacacacaa aaacatcatg atcaacctga tggacattct
      481 ggaggtggac accaagaaac agcagattgt ccgcgtggag ccgttggtga ccatgggtca
      541 ggtgactgcc ctgctgacct ccattggctg gactctgcct gtgttgcccg agttggatga
      601 cctcacagtg gggggactga tcatgggcac aggcatcgag tcttcatccc acaagtatgg
      661 cctgttccag cacatctgca ctgcctacga gctggtcctg gccgatggca gctttgtgcg
      721 atgcacaccg tcggagaact cggacctgtt ctacgctgtg ccctggtcct gcgggaccct
      781 gggcttcctg gtggccgccg aaatccgcat catccccgcc aagaagtacg tcaagctgcg
      841 gtttgagccg gtgtgcggcc tggaggccat ctgtgacagg ttcacccgtg agtcccagcg
      901 gcaggagaac cacttcgtgg aagggctgct ctactccctg gaggaagctg taatcatgac
      961 gggggtcatg accgatgagg cagagcctgg caagctgaat agcattggca actactacaa
     1021 gccgtggttc ttcaagcacg tggagaacta cctgaagaca aactgcgagg gcctggagta
     1081 catccccttg agacactact accaccgcca cacgcgcagc atcttctggg agctccagga
     1141 catcatcccc ttcggcaaca accccgtctt ccgctacctc tttggttgga tggtgcctcc
     1201 caagatctcc ctcctgaagc tgacccaggg cgagacgctg cgcaagctgt acgagcagca
     1261 ccacgtggtg caggacatgc tggtgcccat gaaatgcctg ccgcaggccc tgcacacctt
     1321 ccacagcgac atccacgtct accccatctg gctgtgccca ttcatcctgc ccagccagcc
     1381 gggcctggtg caccccaagg gaaacgaggc cgagctctac gtcgacattg gtgcctacgg
     1441 ggagccgcgc gtgaagcact ttgaagcccg gtcctgcatg aggcagttgg agaagttcgt
     1501 ccgaagtgtg cacgggttcc agatgctgta tgccgactgc tacatggacc gggaggagtt
     1561 ctgggagatg tttgacggct ccctgtacca taggctgcgg aaacagctcg gctgccagga
     1621 cgccttcccg gaggtctatg acaagatctg caaggctgcc aggcactgag ccggagccca
     1681 ccccgaagga ggcggacgcg agggcggacc ctgtccccag ggccagaagg catctatctt
     1741 cccttcactc aagcttggct gctctgccag atccacactt tcagaaagaa acccctccag
     1801 aaaccccacc caggtggccc cgacagcttg ctcccagctt ccaggggcag ccaagtagag
     1861 tggacaggac atgagatttg gagtcagaca aacccgagtc tagttcccag ttctgccact
     1921 cattagctgt gtgactctga gtgagtcact cagccactct gagccctgtt cctcatctgt
     1981 tgaaaggggg taatgctgtc ttcctgctac tgtcatctaa gtcaagcgcc tgtcgcagca
     2041 gaggtgccgg agaagcggca gctgctgtta gcacggcttc ccactcagcg tcacgtcgga
     2101 ctaaagtgct ttggattcag tggttgagtc cgggaaggct ccatgttagg tcacctgggc
     2161 tcgggtttgg ctgaaggggg tgcccttgag ttgcgctgcc atcacttgtc agctgcaaga
     2221 cctcctcgcc gagggaagga aggaaggttc ctctccatcc ctgaggtctt gggagggcaa
     2281 cagatggggc gggcaggtgg gcgggcccaa gatgtgctgt gccaaagcca ggtctgattc
     2341 caaagttctc cctgccgtgc tcggtggcgc cttgcccctt cctccttcat gctcaggctt
     2401 gcaggcccac tgcagccgtt gcccaagtcc actcagaggg gactgtgtcc ttggagaaga
     2461 cacttcaggg ttgaatcctg gccaggccca ggcctgggac acctgcccag gctgggtgag
     2521 tggtctctgc tctgaattga atccagagga cctgggctca ttcttgcctc tccaccctcc
     2581 atggctcttg ttcccagaac ccgctttgcc atggtggggc tgtgtcctct gctctgcagt
     2641 aggggtggga gttgggggcg ggggggaacc gcgccaagca ggaaaatgga gcccgctgtc
     2701 actcggcttc gtggggttcc tcactgcggg gctaaaagaa aacagtatca acttgatttc
     2761 tccaaccact catctccccc tttttttctt tctcccccgg cccccaactg tagttaattt
     2821 tagtgcctta caaatcctaa gctcagagaa aagttagctc catttccgtt ccagagggaa
     2881 ggaaaccttc ccaggtccct gcccgcctag tagagcttgg ttgtttatgc agctctgtct
     2941 taagaactgc ccagcctcag ctgaaaaccc agaatctgag agggaattgt gtaagggaag
     3001 ctggaattaa gtgaactgtg ccaggcagtg acattttcgg agagagagag agagagacca
     3061 ctgcaccagg agccaggagg cctgggtttc agtccttgct gtattcctca cgagctctgc
     3121 acccgtgggc aagtcatttg tccctctgag ctgtagtttc ctcatctgtc acatcagcac
     3181 acacaagacc acctgaggcc cttctgctgt agaagtgcag agctgtctta aacaccacaa
     3241 ctgcaaaccc catgaaaagc ctcttgtgtg gatagtcaga ggaaaaacaa atgatctaag
     3301 tggacgcttg ggggttgtct gccgtttaag gtccttcctt cagcccaagg ccagctctca
     3361 tcttttcaga aaggcacaac catggcctgc agggaagtgt caatcttgtc accacaggtt
     3421 gccagaatcc tcccagagcc atgctttggc tgccgaggct cactcatcct gccctgggct
     3481 tggcgtgctg cagtgtcgcg gcgtggtcct gggagttctg ggcgcattca ggacactcag
     3541 atggcagagg aaccactctt ccccatttgg cctctggagg gggcataaga aaaaaaaaga
     3601 aacctcattt tctcgcttgt atgcaaagca cgtgaatact ggcattagct ctcctagtgg
     3661 gcccgtgggc ttcccgctcg gcgctaaagt gatgatccta cttactgtag aggaatggtg
     3721 agcccgagca aggttagccc aacagataag gtcccatcct ttcaccagtg gggcctccgt
     3781 ccctgggccc ctgggagtgt ggccagagat gccagcagct tctgttatcc tcagtcctac
     3841 aaagcaaaat cctgcccttc ggagacctca ctcggaaccc gggactcaga agggagggag
     3901 ggtctgggga tcacaccagc ctcaggttag tgtttcgctt cagtgatatc ttgcctagaa
     3961 aggggcagtc ttccaagcat gttgagctgg gcgaccagct ctttcttgta gccagtctcg
     4021 tcactacccg tccagatggt ggtttcaggt ggaattaaac ttggcacatg gcgggagtgg
     4081 ggcagcgtgt gtggaaagta taagaagagg cctctccctt ccggaacgcc gagtttctct
     4141 gcatgaaggt tttctgtaaa atccggattc tagccagttt ctttggctgg aaggatacat
     4201 aatctaatta gctgttactg agagggaagg ggtggggatg ggggtggcag tgaatgctgt
     4261 gtgattttta gttttttcct taatcgtggg gaccacggaa aaaggcctgg gtcccccccc
     4321 ccacccccca gcaggctctg cggctgcagg cgctgtgcct actgtctgaa cacttcatgt
     4381 ccctatggct gtgtggcccc cgcttctgta agaataaaag tgtgatctgg aaagta
//
LOCUS       XM_032649416            3595 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 24-dehydrocholesterol reductase (DHCR24),
            transcript variant X2, mRNA.
ACCESSION   XM_032649416
VERSION     XM_032649416.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3595
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3595
                     /gene="DHCR24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 27 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762463"
     CDS             126..1676
                     /gene="DHCR24"
                     /codon_start=1
                     /product="delta(24)-sterol reductase isoform X2"
                     /protein_id="XP_032505307.1"
                     /db_xref="GeneID:116762463"
                     /translation="MEPAVSLAVCALLFLLWVRVKGLEFVLIHQRWVFVCLFLLPLSL
                     IFDIYYYVRAWVVFKLSSAPRLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSL
                     RVGKYKKTHKNIMINLMDILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELD
                     DLTVGGLIMGTGIESSSHKYGLFQHICTAYELVLADGSFVRCTPSENSDLFYAVPWSC
                     GTLGFLVAAEIRIIPAKKYVKLRFEPVCGLEAICDRFTRESQRQENHFVEGLLYSLEE
                     AVIMTGVMTDEAEPGKLNSIGNYYKPWFFKHVENYLKTNCEGLEYIPLRHYYHRHTRS
                     IFWELQDIIPFGNNPVFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMK
                     CLPQALHTFHSDIHVYPIWLCPFILPSQPGLVHPKGNEAELYVDIGAYGEPRVKHFEA
                     RSCMRQLEKFVRSVHGFQMLYADCYMDREEFWEMFDGSLYHRLRKQLGCQDAFPEVYD
                     KICKAARH"
     misc_feature    <465..734
                     /gene="DHCR24"
                     /note="FAD binding domain; Region: FAD_binding_4;
                     pfam01565"
                     /db_xref="CDD:426326"
     misc_feature    468..>1319
                     /gene="DHCR24"
                     /note="sugar 1,4-lactone oxidases; Region: FAD_lactone_ox;
                     TIGR01678"
                     /db_xref="CDD:273751"
ORIGIN      
        1 gtcttcgggc tcgcggggag cgggccgcgg gcagcagcga gcgcaggccg gcgaagagcg
       61 ggtggcggtg accagcggcg cgagccggca tcccctcccc cgcgcggtga gccgccggct
      121 ccaccatgga gcccgccgtg tcgctggcag tgtgcgctct gctcttcctg ctctgggtcc
      181 gcgtgaaggg gctggagttc gtgctcatcc accagcgctg ggtgttcgtg tgcctctttc
      241 tcctgccgct ctcgctcatc ttcgacatct actactatgt gcgcgcctgg gtggtgttca
      301 agctcagcag cgcgccgcgg ctgcacgagc agcgcgtgcg ggacatccag aagcaggtac
      361 gggaatggaa ggagcagggc agcaagacct tcatgtgtac agggcgccct ggctggctta
      421 ccgtctcact gcgggttggg aagtacaaga agacacacaa aaacatcatg atcaacctga
      481 tggacattct ggaggtggac accaagaaac agattgtccg cgtggagccg ttggtgacca
      541 tgggtcaggt gactgccctg ctgacctcca ttggctggac tctgcctgtg ttgcccgagt
      601 tggatgacct cacagtgggg ggactgatca tgggcacagg catcgagtct tcatcccaca
      661 agtatggcct gttccagcac atctgcactg cctacgagct ggtcctggcc gatggcagct
      721 ttgtgcgatg cacaccgtcg gagaactcgg acctgttcta cgctgtgccc tggtcctgcg
      781 ggaccctggg cttcctggtg gccgccgaaa tccgcatcat ccccgccaag aagtacgtca
      841 agctgcggtt tgagccggtg tgcggcctgg aggccatctg tgacaggttc acccgtgagt
      901 cccagcggca ggagaaccac ttcgtggaag ggctgctcta ctccctggag gaagctgtaa
      961 tcatgacggg ggtcatgacc gatgaggcag agcctggcaa gctgaatagc attggcaact
     1021 actacaagcc gtggttcttc aagcacgtgg agaactacct gaagacaaac tgcgagggcc
     1081 tggagtacat ccccttgaga cactactacc accgccacac gcgcagcatc ttctgggagc
     1141 tccaggacat catccccttc ggcaacaacc ccgtcttccg ctacctcttt ggttggatgg
     1201 tgcctcccaa gatctccctc ctgaagctga cccagggcga gacgctgcgc aagctgtacg
     1261 agcagcacca cgtggtgcag gacatgctgg tgcccatgaa atgcctgccg caggccctgc
     1321 acaccttcca cagcgacatc cacgtctacc ccatctggct gtgcccattc atcctgccca
     1381 gccagccggg cctggtgcac cccaagggaa acgaggccga gctctacgtc gacattggtg
     1441 cctacgggga gccgcgcgtg aagcactttg aagcccggtc ctgcatgagg cagttggaga
     1501 agttcgtccg aagtgtgcac gggttccaga tgctgtatgc cgactgctac atggaccggg
     1561 aggagttctg ggagatgttt gacggctccc tgtaccatag gctgcggaaa cagctcggct
     1621 gccaggacgc cttcccggag gtctatgaca agatctgcaa ggctgccagg cactgagccg
     1681 gagcccaccc cgaaggaggc ggacgcgagg gcggaccctg tccccagggc cagaaggcat
     1741 ctatcttccc ttcactcaag cttggctgct ctgccagatc cacactttca gaaagaaacc
     1801 cctccagaaa ccccacccag gtggccccga cagcttgctc ccagcttcca ggggcagcca
     1861 agtagagtgg acaggacatg agatttggag tcagacaaac ccgagtctag ttcccagttc
     1921 tgccactcat tagctgtgtg actctgagtg agtcactcag ccactctgag ccctgttcct
     1981 catctgttga aagggggtaa tgctgtcttc ctgctactgt catctaagtc aagcgcctgt
     2041 cgcagcagag gtgccggaga agcggcagct gctgttagca cggcttccca ctcagcgtca
     2101 cgtcggacta aagtgctttg gattcagtgg ttgagtccgg gaaggctcca tgttaggtca
     2161 cctgggctcg ggtttggctg aagggggtgc ccttgagttg cgctgccatc acttgtcagc
     2221 tgcaagacct cctcgccgag ggaaggaagg aaggttcctc tccatccctg aggtcttggg
     2281 agggcaacag atggggcggg caggtgggcg ggcccaagat gtgctgtgcc aaagccaggt
     2341 ctgattccaa agttctccct gccgtgctcg gtggcgcctt gccccttcct ccttcatgct
     2401 caggcttgca ggcccactgc agccgttgcc caagtccact cagaggggac tgtgtccttg
     2461 gagaagacac ttcagggttg aatcctggcc aggcccaggc ctgggacacc tgcccaggct
     2521 gggtgagtgg tctctgctct gaattgaatc cagaggacct gggctcattc ttgcctctcc
     2581 accctccatg gctcttgttc ccagaacccg ctttgccatg gtggggctgt gtcctctgct
     2641 ctgcagtagg ggtgggagtt gggggcgggg gggaaccgcg ccaagcagga aaatggagcc
     2701 cgctgtcact cggcttcgtg gggttcctca ctgcggggct aaaagaaaac agtatcaact
     2761 tgatttctcc aaccactcat ctcccccttt ttttctttct cccccggccc ccaactgtag
     2821 ttaattttag tgccttacaa atcctaagct cagagaaaag ttagctccat ttccgttcca
     2881 gagggaagga aaccttccca ggtccctgcc cgcctagtag agcttggttg tttatgcagc
     2941 tctgtcttaa gaactgccca gcctcagctg aaaacccaga atctgagagg gaattgtgta
     3001 agggaagctg gaattaagtg aactgtgcca ggcagtgaca ttttcggaga gagagagaga
     3061 gagaccactg caccaggagc caggaggcct gggtttcagt ccttgctgta ttcctcacga
     3121 gctctgcacc cgtgggcaag tcatttgtcc ctctgagctg tagtttcctc atctgtcaca
     3181 tcagcacaca caagaccacc tgaggccctt ctgctgtaga agtgcagagc tgtcttaaac
     3241 accacaactg caaaccccat gaaaagcctc ttgtgtggat agtcagagga aaaacaaatg
     3301 atctaagtgg acgcttgggg gttgtctgcc gtttaaggtc cttccttcag cccaaggcca
     3361 gctctcatct tttcagaaag gcacaaccat ggcctgcagg gaagtgtcaa tcttgtcacc
     3421 acaggttgcc agaatcctcc cagagccatg ctttggctgc cgaggctcac tcatcctgcc
     3481 ctgggcttgg cgtgctgcag tgtcgcggcg tggtcctggg agttctgggc gcattcagga
     3541 cactcagatg gcagaggaac cactcttccc catttggcct ctggaggggg cataa
//
LOCUS       XM_032649430            1631 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus epoxide hydrolase 4 (EPHX4), mRNA.
ACCESSION   XM_032649430
VERSION     XM_032649430.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1631
                     /gene="EPHX4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 Proteins, and 21%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762470"
     CDS             108..1208
                     /gene="EPHX4"
                     /codon_start=1
                     /product="epoxide hydrolase 4"
                     /protein_id="XP_032505321.1"
                     /db_xref="GeneID:116762470"
                     /translation="MARLRDCLPRLMVTIRSLLFWSLVYCYCGLCASVYLLKLLWSIG
                     KGPTQTFRRVAREHPPACLNDPSLGTHCYVRIKDSGLRFHYVAAGERGKPLMLLLHGF
                     PEFWYSWRHQLREFKSEYRVVALDLRGYGETDAPIHRENYKLDCLITDIKDILDSLGY
                     SKCVLIGHDWGGMIAWLIAICYPEMVMKLIVINFPHPNVFTEYILRHPAQLFKSSYYY
                     FFQIPWFPEFMFSINDFKALKHLFTSHSTGIGRKGCRLTAEDLEAYIYVFSQPGALNG
                     PINHYRNIFSCLPLKHHMVITPTLLLWGEKDAFMEAEMAEGTKIYVKNYFRLTILSEA
                     SHGLQQEQPDIVNKLIWTFLKEETRRKDWLFL"
     misc_feature    315..1175
                     /gene="EPHX4"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only]; Region:
                     MenH; COG0596"
                     /db_xref="CDD:440361"
ORIGIN      
        1 gaggggctga cgcgccgccg cgcttgcagt ctcgctccta gccggagtgc gcgccgctgc
       61 tctccgcgcc tcggaagtgc agcggacccc gccgttgccg ccgcccgatg gcgaggctgc
      121 gggattgcct cccccgcctg atggtcacga tccggtccct gctcttctgg tccctggtct
      181 actgctactg cgggctctgc gcttccgtct acctgctcaa acttttgtgg agcatcggca
      241 agggacccac gcagaccttc cggagggtcg cccgggaaca ccctccagcg tgcttgaacg
      301 acccctcttt gggtacccac tgctacgtgc ggatcaagga ttcggggtta agatttcatt
      361 atgttgccgc tggagaaaga ggcaaaccac ttatgctgct gcttcatgga tttccagaat
      421 tctggtattc ttggcgtcac caactaaggg aatttaaaag tgaatataga gttgtagcgt
      481 tggacttgag aggctatgga gaaacagatg ctcccattca tcgagaaaat tataaattgg
      541 actgtctaat tacagatata aaggatattt tagactcttt agggtatagc aaatgtgttc
      601 ttattggcca tgactgggga ggcatgattg cttggctaat tgccatctgt tatcctgaaa
      661 tggtgatgaa gcttattgtt attaacttcc ctcatccaaa tgtatttaca gaatatattt
      721 tacgacaccc tgcccagctg ttcaaatcca gctattatta tttcttccaa ataccatggt
      781 tcccagaatt tatgttttcc ataaatgatt tcaaggcttt gaaacatctg tttactagtc
      841 acagcactgg cattggaaga aaaggatgtc gattaacagc agaagatctt gaagcttata
      901 tttatgtttt ttctcaacct ggagcattaa atggtccaat taaccattac cgaaatatct
      961 tcagctgcct gcctctcaag catcacatgg tgatcactcc aacactacta ctgtggggag
     1021 agaaagacgc atttatggag gctgagatgg ctgaaggcac gaagatttac gttaagaact
     1081 atttcaggct aactattttg tcagaggcca gtcacgggct ccagcaagag caacctgaca
     1141 tagtgaacaa attgatatgg acatttctaa aagaagaaac aaggagaaaa gactggcttt
     1201 ttctgtgacg agtctgtaat gaaatctcta aataattttt taaaattgtt catcaacttc
     1261 tttaagcttc attaggaaaa attgttttaa tatgctttat cataaataaa tatcctgaca
     1321 aatgacatca agaaaaatct gagaacgtgt gagcttgtaa cataatgttg gtttttttct
     1381 tgttgtattt tgcacagaaa agcatctgcc ttaaaatgta cacacttgta caaaaaggaa
     1441 gttggagaaa gtggctcagt tttggttttt cgtgttattt accctgttaa tatatggtgc
     1501 cttttacaaa tgtatattaa agattagctg tgccatatta aaaggcaaaa ctgcaatggt
     1561 ataaattttt attttattgt tccaaagttc tttttactat tttttaaccg ttaaaaaatt
     1621 ctattatcaa a
//
LOCUS       XM_032649441            6203 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL9 transcription coactivator (BCL9),
            transcript variant X1, mRNA.
ACCESSION   XM_032649441
VERSION     XM_032649441.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6203
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6203
                     /gene="BCL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 11 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762476"
     CDS             679..4959
                     /gene="BCL9"
                     /codon_start=1
                     /product="B-cell CLL/lymphoma 9 protein isoform X1"
                     /protein_id="XP_032505332.1"
                     /db_xref="GeneID:116762476"
                     /translation="MHSSNPKVRNSPSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDS
                     KFSNQGKQGGSASQSQPSPCDSKSGGHTPKALPGPGGSMGLKNGAGNGAKGKGKRERS
                     ISADSFDQRDPGTPNDDSDMKECNSADHIKSQDSQHTPHSMTPSNATVPRSSTPSHGQ
                     TTAPEPTPAQKTPAKVVYVFSTEMANKAAEAVLKGQVETIVSFHIQNISNSKTERSTA
                     PLNTQISALRNDPKPLPQQPPAPANQDQTSSQNTRLQPTPPIPAPAPKPAAPPRPLDR
                     DSPGVENKLIPSVGSPASSTPLPPDGTGPNSTPNNRAVTPVSQGSSSSSADPKGPPPP
                     PLSSGEPPPLGENPDGLSQEQLEHRERSLQTLRDIQRMLFPDEKEFPGGQSGGPQQST
                     GVLDGPQKKPEGPIQAMMAQSQSLGKGPGPRTDVGAPFGPQGHRDVPFSPDEMVPPSM
                     NSQSGPIGPDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQVVVQQCSLQDMMVHQHGPR
                     GVVRGPPPPYQMTPGEAWGPGGAEPFADGINMPHSLPPRAMAPHPNMPGSQMRLPGFA
                     GMMNSEMEGPSVPNPASRPGLSGVSWPDDVPKIPDGRNFPPGQGVFSGPGRGERFPNP
                     QGLSEEMFQQQLAEKQLGLPPGMSVEGIRPGMEMNRLIPGSQRHMEPGNNPIFPRIPV
                     EGPLSPSRGDFPKGMPPQMGPGRELEFGMVPSGMKGDVSLNVNMGSNSQMIPQKMREA
                     GVGPEEMMKLRAGGADMLPAQQKMVPLPFGEHPQQEYGMGPRPFLPMSQGPGSNSGLR
                     NLREPVGPDQRTNSRLSHMPPLPLNPSSNPTSLNTAPSVQRGLGRKPVDLSVAGSQVH
                     SPGINPLKSPTMRQVQSPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPVLGSA
                     AASPVHLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGGPPP
                     PTASQSASVSIPGSLPSSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIK
                     TVASSDDDSPPARSPNLPSMNNMPGLGINTQNPRISGPNPVVPMPTLSPMGMTQPLSH
                     SNQMPSPNAMGPTIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQS
                     PPQQVPFPHNGPSGGQGNFPGGMGFPGEGPLGRPSNLPQSSADAALCKPGGPGGPDSF
                     AVLGNSMPSVFTDPDLQEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGRKQ
                     PQGPGPGFSHMQGMMGEQAPRMGLALPGMGGPGPVGTPDIPLGTAPSMPGHNPMRPPA
                     FLQQGMMGPHHRMMSPAQSTMPGQPTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSP
                     GMMMSMQGMMGPQQNIMIPPQMRPRSMAADVGMAGFSQGPGNPGNMMF"
     misc_feature    1726..1836
                     /gene="BCL9"
                     /note="B-cell lymphoma 9 protein; Region: BCL9; pfam11502"
                     /db_xref="CDD:431912"
     misc_feature    <2389..4161
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <3430..4908
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 caatggagcc tatgtgtgct tgcgggagtg ggacggcgcc gccgccgccg ctgccgccgc
       61 cggggggaga cgctgcgccg ccgctgccgc tggcccgggc cccggccccc cggggctgag
      121 agccgccccg gaccgaagcc ccctcccata ctctgttcct cttctcccct cccccactcc
      181 tgcctcgggg gactgaatgt gggactagct ggtgttactc cactttgacc taaaaattcc
      241 tttctgtttg ggaggcagag atcactcttg gaaagttcct ctgtgtccca atgttagaag
      301 agagagcaaa ttggacatct tgaaaggtga gggtcacctt tgagacaggg gttcctggac
      361 tccgcaagct cctcccctcc aggatgagca ctgctgtatc gtgacccttg gggttttgtg
      421 tgccctggag atgcgagatt ttcctttggc agcaggaggc acacacccag agaatgctgg
      481 agccgcaagg ggacaggacc cacttccaca gcggagaaaa acaaagagga aaaaggcgtg
      541 caggtggcca gcgctaaggg actcacccaa caagcagtgg gccactgccg ctgtcctcag
      601 cagctgtttc tgctgcagcc cgagaggaac tcggtgagcc cgtccctgtt tgtggctgca
      661 agctcaggat ttcaatcaat gcattccagt aaccctaaag tgaggaactc tccgtcagga
      721 aacacacaga gtagccctaa gtcaaagcag gaggtgatgg tccgtccccc tacagtgatg
      781 tccccatctg gaaaccccca gctggattcc aaattctcca atcagggtaa acaggggggc
      841 tcagccagcc aatcccagcc atccccctgt gactccaaga gtgggggcca tacccctaaa
      901 gcactccctg gcccaggtgg gagcatgggg ctgaagaatg gggctggaaa tggtgccaag
      961 ggcaagggga aaagggagcg aagtatttcc gccgactcct ttgatcagag agatcctggg
     1021 actccaaacg atgactctga catgaaagaa tgtaattctg ctgaccacat aaagtcccag
     1081 gattcccagc acacgccaca ctcaatgacc ccgtcaaatg ctacagtccc caggtcttcc
     1141 accccctccc atggccagac tactgcccca gagcccacac ctgctcagaa gactcccgcc
     1201 aaagtggtgt atgtgttttc tactgagatg gccaataaag ctgcagaagc tgtattgaag
     1261 ggccaggttg aaactattgt ctctttccac atccagaaca tctctaacag caagacagag
     1321 agaagcacag cccctctgaa cacacagata tctgcccttc ggaatgatcc gaaacctctc
     1381 ccacaacagc cccccgctcc agccaaccag gaccagactt cctcccagaa caccagactg
     1441 cagccaactc cacccattcc ggcaccagca cccaagcctg ccgccccccc gcgtcccctg
     1501 gaccgggata gtcccggggt agaaaacaaa ctgattcctt ctgtaggcag ccctgccagc
     1561 tccactccac tgccgccaga cggtaccggg ccaaactcga cgcccaacaa ccgagcagtg
     1621 actcccgttt cccaggggag cagtagctct tcagcagatc ccaaaggccc cccacctcca
     1681 ccgttgtcca gtggagagcc ccccccgctg ggagagaacc ccgacggact gtctcaggag
     1741 cagctggagc accgggagcg ctccttacag acgctcagag atatccagcg catgcttttc
     1801 cctgatgaga aagaattccc gggaggacag agtgggggac cccagcagag tactggggtg
     1861 ttagatggac ctcagaaaaa accagaaggg ccaatacagg ccatgatggc tcaatcccaa
     1921 agcctaggta agggacctgg gccccggaca gacgtggggg ctccatttgg ccctcaggga
     1981 cacagagatg tgcccttctc tccggatgaa atggttccac cttccatgaa ctcccagtct
     2041 gggcccattg gacccgacca cctggatcac atgacccctg agcagatagc gtggctgaag
     2101 ctgcagcagg agttctatga ggagaagagg agaaagcagg agcaagtggt cgtgcagcag
     2161 tgctccctcc aggatatgat ggtccatcag cacgggccgc ggggagtggt ccgagggcct
     2221 ccccctccgt accagatgac ccccggtgag gcctgggggc ctgggggtgc agagcccttt
     2281 gctgacggga tcaacatgcc ccattctctg cccccgaggg ccatggctcc ccaccccaac
     2341 atgccaggta gccagatgcg cctccctgga tttgcaggaa tgatgaactc tgaaatggag
     2401 gggcctagtg tccccaaccc agcatctaga ccaggtctct ctggagtcag ctggccagac
     2461 gatgtgccaa aaatcccaga cggtcgaaac ttcccgcctg gccagggcgt cttcagtggt
     2521 cctggccgag gggaacgttt cccaaacccc caaggattgt ctgaagagat gtttcaacag
     2581 cagctggcag agaaacagct gggtctgccc ccggggatga gcgtggaagg catcaggccc
     2641 ggcatggaga tgaacaggct gatccctggc tcccagcgac acatggagcc ggggaataat
     2701 cccatcttcc ctcgcatacc agtagagggc ccgctgagcc cttctagggg tgactttcca
     2761 aaaggaatgc ccccacagat gggccccggt cgggaacttg agtttgggat ggttcccagt
     2821 gggatgaagg gagatgtcag tctaaatgtc aacatgggat ccaactctca gatgatacct
     2881 cagaagatga gagaggctgg ggtggggccc gaggagatga tgaaactccg cgccggcggt
     2941 gcagacatgc tacctgctca gcagaagatg gtgcccctgc cctttggcga gcaccctcag
     3001 caagagtatg gcatgggccc caggccgttc ctccccatgt ctcagggtcc aggcagcaac
     3061 agtggcttgc ggaatctcag agaaccagtt gggcccgacc aaaggactaa cagccggctc
     3121 agtcatatgc caccactacc tctcaaccct tctagtaacc ccactagcct caacactgct
     3181 ccttccgttc agcgcggcct ggggcggaag cccgtggatc tctctgtggc aggcagccag
     3241 gtgcattccc caggcattaa ccctctgaaa tctcccacga tgcgccaagt ccagtcgcca
     3301 atgctgggct cgccctcggg gaacctcaag tccccccaga ctccatcgca gctggcaggc
     3361 atgctggcgg gcccagctgc tgctgcttcc attaagtccc cccctgtctt ggggtctgct
     3421 gctgcttcgc ctgttcacct caagtctcca tcacttcccg ccccatcacc gggatggacc
     3481 tcctctccaa agcctcccct tcagagcccc gggatccctc caaaccataa agcacccctc
     3541 accatggcct ccccagccat gctgggaagt gtagagtcag gtggcccccc acctcctaca
     3601 gccagccagt ctgcctctgt gagtatcccg ggaagtcttc cctctagtac accttacacc
     3661 atgcctccag agccgaccct ttcccagaac ccactgtcta ttatgatgtc tcgaatgtcc
     3721 aagtttgcaa tgcccagttc taccccgtta taccacgatg ccatcaagac tgtggccagc
     3781 tcagatgacg actcccctcc agctcgttct cccaacttgc catcaatgaa taatatgcca
     3841 ggactgggca ttaatacaca gaatcctcga atttcaggtc caaaccccgt ggttccaatg
     3901 ccaaccctca gcccaatggg aatgacccag ccactttctc actccaatca gatgccctct
     3961 ccgaatgcca tgggacccac catacctcct catggggtcc cgatggggcc tggcttgatg
     4021 tcacacaatc ctatcatggg gcatgggtcc caggagcctc cgatggtacc tcaaggacgg
     4081 atgggtttcc cccagggctt ccctccagtt cagtctcctc cacagcaggt tccatttcct
     4141 cacaatggcc ccagtggggg gcagggcaac ttcccaggag ggatgggttt cccaggagaa
     4201 gggccccttg gccgccccag caacctgccc caaagttcag cagatgcagc actttgcaag
     4261 cctggaggcc cagggggtcc tgactccttt gctgtcctgg ggaacagcat gccttcagtg
     4321 tttacagacc cagatctaca ggaggtcatc cgacctggag ccaccggaat acctgagttt
     4381 gatctgtctc gtattattcc atctgagaag cctagccaga cactgcaata tttccctcga
     4441 ggggaagtcc caggccgtaa acagccccag ggtcctggac ctgggttttc gcacatgcag
     4501 gggatgatgg gcgaacaagc ccccagaatg ggactagcat tacctggcat gggaggtcca
     4561 gggccagtgg gaactccgga catccctctt ggtacagctc catccatgcc aggccacaac
     4621 ccaatgagac caccagcctt tctccagcaa ggcatgatgg gacctcacca tcggatgatg
     4681 tcaccagcac aatctacaat gcccggccag cccaccctga tgagcaatcc agctgctgcc
     4741 gtgggcatga ttcctggcaa ggatcgaggg cctgccgggc tctacaccca ccctgggcct
     4801 gtgggatctc caggcatgat gatgtccatg cagggcatga tgggacccca acagaacatc
     4861 atgatccccc cacagatgag gccccggagc atggccgctg acgtgggcat ggctggattt
     4921 agccaaggac ctggcaaccc aggaaacatg atgttttaag ctgctaagat tggatgtgcc
     4981 gatccttgtc aagatgagat tccaggtcct gagagctgct ttgagggagt tccaggagta
     5041 ctgttggtca tgcaatagga gaacagagac ccaagggctg ctttggggga ggggggaact
     5101 cgagaatgta tggatttatc tgaaaacaaa ttattcattt aatcaacagg tgtgtttttt
     5161 ttaagattta ttttttaaaa attatttttg tggacttggg tatcccatga tggcacctac
     5221 ttttgggaat ctgtagccgt gctttgagaa ttgccatggg tcatgtgttg caccattctc
     5281 tgtatgttta cgtcctttgg actggcttct cccaggattc ttttctggtt ttgtttttgc
     5341 tttgggcttt attttttttg tgtgtactgt actatattgt aaaagggatt ttagcagaga
     5401 ctttagtctt tgggacaaga gaacaggaat gctgggctgt ttactttagg tggagaatcc
     5461 atcttcagac ctttggacta ttttctttca actccagtgt atagaaaaac caaactacga
     5521 cctcagagca gagtattaat gaaaagcaca aaaagaggaa ctaagttcag cgaggggtgg
     5581 ggggaggggg gagatttttc tttttaaaaa taatgatgct taggacattt gtttttcagt
     5641 tcaagtgctc ttcagcactg tctgtctctc ccaatctgaa gacccacctt cacatttttc
     5701 tcttgttttc cctcctctct ccttccctat cttcttggtt aagtgagttt cctcctgttg
     5761 tgtcccccac tggtgacccc ctgcttccct cctctctttt tccctttggc agctgcaata
     5821 cacggtgtta ttttggggaa ataaatctaa cgaagcctcg ccttccatgc cgagcgttgt
     5881 cccggctctg ggagggaaag gtctgtcttt gggatgctca atggtcttct ttgcccttcg
     5941 tcttttcttc cccaacctac ccttccctgc ccaccttgtt ttctgttctc cttttattag
     6001 gaattcccaa gtgaatttta ttaatgtggg agtggaacag atgctaaaag ctatccaaga
     6061 ttttgttttt gtttttaatt ttttgtttcc ttccctttcc tccccgtccc atgcgtcaaa
     6121 cgttctgtgt aacctccatt aaatttggta caaaaccact caccagagct gtggtgtcag
     6181 aaaaataaaa tatattgttt ctt
//
LOCUS       XM_032649452            6193 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL9 transcription coactivator (BCL9),
            transcript variant X2, mRNA.
ACCESSION   XM_032649452
VERSION     XM_032649452.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6193
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6193
                     /gene="BCL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762476"
     CDS             663..4943
                     /gene="BCL9"
                     /codon_start=1
                     /product="B-cell CLL/lymphoma 9 protein isoform X1"
                     /protein_id="XP_032505343.1"
                     /db_xref="GeneID:116762476"
                     /translation="MHSSNPKVRNSPSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDS
                     KFSNQGKQGGSASQSQPSPCDSKSGGHTPKALPGPGGSMGLKNGAGNGAKGKGKRERS
                     ISADSFDQRDPGTPNDDSDMKECNSADHIKSQDSQHTPHSMTPSNATVPRSSTPSHGQ
                     TTAPEPTPAQKTPAKVVYVFSTEMANKAAEAVLKGQVETIVSFHIQNISNSKTERSTA
                     PLNTQISALRNDPKPLPQQPPAPANQDQTSSQNTRLQPTPPIPAPAPKPAAPPRPLDR
                     DSPGVENKLIPSVGSPASSTPLPPDGTGPNSTPNNRAVTPVSQGSSSSSADPKGPPPP
                     PLSSGEPPPLGENPDGLSQEQLEHRERSLQTLRDIQRMLFPDEKEFPGGQSGGPQQST
                     GVLDGPQKKPEGPIQAMMAQSQSLGKGPGPRTDVGAPFGPQGHRDVPFSPDEMVPPSM
                     NSQSGPIGPDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQVVVQQCSLQDMMVHQHGPR
                     GVVRGPPPPYQMTPGEAWGPGGAEPFADGINMPHSLPPRAMAPHPNMPGSQMRLPGFA
                     GMMNSEMEGPSVPNPASRPGLSGVSWPDDVPKIPDGRNFPPGQGVFSGPGRGERFPNP
                     QGLSEEMFQQQLAEKQLGLPPGMSVEGIRPGMEMNRLIPGSQRHMEPGNNPIFPRIPV
                     EGPLSPSRGDFPKGMPPQMGPGRELEFGMVPSGMKGDVSLNVNMGSNSQMIPQKMREA
                     GVGPEEMMKLRAGGADMLPAQQKMVPLPFGEHPQQEYGMGPRPFLPMSQGPGSNSGLR
                     NLREPVGPDQRTNSRLSHMPPLPLNPSSNPTSLNTAPSVQRGLGRKPVDLSVAGSQVH
                     SPGINPLKSPTMRQVQSPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPVLGSA
                     AASPVHLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGGPPP
                     PTASQSASVSIPGSLPSSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIK
                     TVASSDDDSPPARSPNLPSMNNMPGLGINTQNPRISGPNPVVPMPTLSPMGMTQPLSH
                     SNQMPSPNAMGPTIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQS
                     PPQQVPFPHNGPSGGQGNFPGGMGFPGEGPLGRPSNLPQSSADAALCKPGGPGGPDSF
                     AVLGNSMPSVFTDPDLQEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGRKQ
                     PQGPGPGFSHMQGMMGEQAPRMGLALPGMGGPGPVGTPDIPLGTAPSMPGHNPMRPPA
                     FLQQGMMGPHHRMMSPAQSTMPGQPTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSP
                     GMMMSMQGMMGPQQNIMIPPQMRPRSMAADVGMAGFSQGPGNPGNMMF"
     misc_feature    1710..1820
                     /gene="BCL9"
                     /note="B-cell lymphoma 9 protein; Region: BCL9; pfam11502"
                     /db_xref="CDD:431912"
     misc_feature    <2373..4145
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <3414..4892
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 agaccagagc agacaatagg cccctaaagt gttcccccta agttgctttg atgttgtcct
       61 agtgtcttga taccaggagg ccagggattg caggaaaagg gtcttttttg tcttcattca
      121 ctttcccccc tcagtttctg aaatgattct ccagaatttc tcctcataaa aaaggactga
      181 atgtgggact agctggtgtt actccacttt gacctaaaaa ttcctttctg tttgggaggc
      241 agagatcact cttggaaagt tcctctgtgt cccaatgtta gaagagagag caaattggac
      301 atcttgaaag gtgagggtca cctttgagac aggggttcct ggactccgca agctcctccc
      361 ctccaggatg agcactgctg tatcgtgacc cttggggttt tgtgtgccct ggagatgcga
      421 gattttcctt tggcagcagg aggcacacac ccagagaatg ctggagccgc aaggggacag
      481 gacccacttc cacagcggag aaaaacaaag aggaaaaagg cgtgcaggtg gccagcgcta
      541 agggactcac ccaacaagca gtgggccact gccgctgtcc tcagcagctg tttctgctgc
      601 agcccgagag gaactcggtg agcccgtccc tgtttgtggc tgcaagctca ggatttcaat
      661 caatgcattc cagtaaccct aaagtgagga actctccgtc aggaaacaca cagagtagcc
      721 ctaagtcaaa gcaggaggtg atggtccgtc cccctacagt gatgtcccca tctggaaacc
      781 cccagctgga ttccaaattc tccaatcagg gtaaacaggg gggctcagcc agccaatccc
      841 agccatcccc ctgtgactcc aagagtgggg gccatacccc taaagcactc cctggcccag
      901 gtgggagcat ggggctgaag aatggggctg gaaatggtgc caagggcaag gggaaaaggg
      961 agcgaagtat ttccgccgac tcctttgatc agagagatcc tgggactcca aacgatgact
     1021 ctgacatgaa agaatgtaat tctgctgacc acataaagtc ccaggattcc cagcacacgc
     1081 cacactcaat gaccccgtca aatgctacag tccccaggtc ttccaccccc tcccatggcc
     1141 agactactgc cccagagccc acacctgctc agaagactcc cgccaaagtg gtgtatgtgt
     1201 tttctactga gatggccaat aaagctgcag aagctgtatt gaagggccag gttgaaacta
     1261 ttgtctcttt ccacatccag aacatctcta acagcaagac agagagaagc acagcccctc
     1321 tgaacacaca gatatctgcc cttcggaatg atccgaaacc tctcccacaa cagccccccg
     1381 ctccagccaa ccaggaccag acttcctccc agaacaccag actgcagcca actccaccca
     1441 ttccggcacc agcacccaag cctgccgccc ccccgcgtcc cctggaccgg gatagtcccg
     1501 gggtagaaaa caaactgatt ccttctgtag gcagccctgc cagctccact ccactgccgc
     1561 cagacggtac cgggccaaac tcgacgccca acaaccgagc agtgactccc gtttcccagg
     1621 ggagcagtag ctcttcagca gatcccaaag gccccccacc tccaccgttg tccagtggag
     1681 agcccccccc gctgggagag aaccccgacg gactgtctca ggagcagctg gagcaccggg
     1741 agcgctcctt acagacgctc agagatatcc agcgcatgct tttccctgat gagaaagaat
     1801 tcccgggagg acagagtggg ggaccccagc agagtactgg ggtgttagat ggacctcaga
     1861 aaaaaccaga agggccaata caggccatga tggctcaatc ccaaagccta ggtaagggac
     1921 ctgggccccg gacagacgtg ggggctccat ttggccctca gggacacaga gatgtgccct
     1981 tctctccgga tgaaatggtt ccaccttcca tgaactccca gtctgggccc attggacccg
     2041 accacctgga tcacatgacc cctgagcaga tagcgtggct gaagctgcag caggagttct
     2101 atgaggagaa gaggagaaag caggagcaag tggtcgtgca gcagtgctcc ctccaggata
     2161 tgatggtcca tcagcacggg ccgcggggag tggtccgagg gcctccccct ccgtaccaga
     2221 tgacccccgg tgaggcctgg gggcctgggg gtgcagagcc ctttgctgac gggatcaaca
     2281 tgccccattc tctgcccccg agggccatgg ctccccaccc caacatgcca ggtagccaga
     2341 tgcgcctccc tggatttgca ggaatgatga actctgaaat ggaggggcct agtgtcccca
     2401 acccagcatc tagaccaggt ctctctggag tcagctggcc agacgatgtg ccaaaaatcc
     2461 cagacggtcg aaacttcccg cctggccagg gcgtcttcag tggtcctggc cgaggggaac
     2521 gtttcccaaa cccccaagga ttgtctgaag agatgtttca acagcagctg gcagagaaac
     2581 agctgggtct gcccccgggg atgagcgtgg aaggcatcag gcccggcatg gagatgaaca
     2641 ggctgatccc tggctcccag cgacacatgg agccggggaa taatcccatc ttccctcgca
     2701 taccagtaga gggcccgctg agcccttcta ggggtgactt tccaaaagga atgcccccac
     2761 agatgggccc cggtcgggaa cttgagtttg ggatggttcc cagtgggatg aagggagatg
     2821 tcagtctaaa tgtcaacatg ggatccaact ctcagatgat acctcagaag atgagagagg
     2881 ctggggtggg gcccgaggag atgatgaaac tccgcgccgg cggtgcagac atgctacctg
     2941 ctcagcagaa gatggtgccc ctgccctttg gcgagcaccc tcagcaagag tatggcatgg
     3001 gccccaggcc gttcctcccc atgtctcagg gtccaggcag caacagtggc ttgcggaatc
     3061 tcagagaacc agttgggccc gaccaaagga ctaacagccg gctcagtcat atgccaccac
     3121 tacctctcaa cccttctagt aaccccacta gcctcaacac tgctccttcc gttcagcgcg
     3181 gcctggggcg gaagcccgtg gatctctctg tggcaggcag ccaggtgcat tccccaggca
     3241 ttaaccctct gaaatctccc acgatgcgcc aagtccagtc gccaatgctg ggctcgccct
     3301 cggggaacct caagtccccc cagactccat cgcagctggc aggcatgctg gcgggcccag
     3361 ctgctgctgc ttccattaag tccccccctg tcttggggtc tgctgctgct tcgcctgttc
     3421 acctcaagtc tccatcactt cccgccccat caccgggatg gacctcctct ccaaagcctc
     3481 cccttcagag ccccgggatc cctccaaacc ataaagcacc cctcaccatg gcctccccag
     3541 ccatgctggg aagtgtagag tcaggtggcc ccccacctcc tacagccagc cagtctgcct
     3601 ctgtgagtat cccgggaagt cttccctcta gtacacctta caccatgcct ccagagccga
     3661 ccctttccca gaacccactg tctattatga tgtctcgaat gtccaagttt gcaatgccca
     3721 gttctacccc gttataccac gatgccatca agactgtggc cagctcagat gacgactccc
     3781 ctccagctcg ttctcccaac ttgccatcaa tgaataatat gccaggactg ggcattaata
     3841 cacagaatcc tcgaatttca ggtccaaacc ccgtggttcc aatgccaacc ctcagcccaa
     3901 tgggaatgac ccagccactt tctcactcca atcagatgcc ctctccgaat gccatgggac
     3961 ccaccatacc tcctcatggg gtcccgatgg ggcctggctt gatgtcacac aatcctatca
     4021 tggggcatgg gtcccaggag cctccgatgg tacctcaagg acggatgggt ttcccccagg
     4081 gcttccctcc agttcagtct cctccacagc aggttccatt tcctcacaat ggccccagtg
     4141 gggggcaggg caacttccca ggagggatgg gtttcccagg agaagggccc cttggccgcc
     4201 ccagcaacct gccccaaagt tcagcagatg cagcactttg caagcctgga ggcccagggg
     4261 gtcctgactc ctttgctgtc ctggggaaca gcatgccttc agtgtttaca gacccagatc
     4321 tacaggaggt catccgacct ggagccaccg gaatacctga gtttgatctg tctcgtatta
     4381 ttccatctga gaagcctagc cagacactgc aatatttccc tcgaggggaa gtcccaggcc
     4441 gtaaacagcc ccagggtcct ggacctgggt tttcgcacat gcaggggatg atgggcgaac
     4501 aagcccccag aatgggacta gcattacctg gcatgggagg tccagggcca gtgggaactc
     4561 cggacatccc tcttggtaca gctccatcca tgccaggcca caacccaatg agaccaccag
     4621 cctttctcca gcaaggcatg atgggacctc accatcggat gatgtcacca gcacaatcta
     4681 caatgcccgg ccagcccacc ctgatgagca atccagctgc tgccgtgggc atgattcctg
     4741 gcaaggatcg agggcctgcc gggctctaca cccaccctgg gcctgtggga tctccaggca
     4801 tgatgatgtc catgcagggc atgatgggac cccaacagaa catcatgatc cccccacaga
     4861 tgaggccccg gagcatggcc gctgacgtgg gcatggctgg atttagccaa ggacctggca
     4921 acccaggaaa catgatgttt taagctgcta agattggatg tgccgatcct tgtcaagatg
     4981 agattccagg tcctgagagc tgctttgagg gagttccagg agtactgttg gtcatgcaat
     5041 aggagaacag agacccaagg gctgctttgg gggagggggg aactcgagaa tgtatggatt
     5101 tatctgaaaa caaattattc atttaatcaa caggtgtgtt ttttttaaga tttatttttt
     5161 aaaaattatt tttgtggact tgggtatccc atgatggcac ctacttttgg gaatctgtag
     5221 ccgtgctttg agaattgcca tgggtcatgt gttgcaccat tctctgtatg tttacgtcct
     5281 ttggactggc ttctcccagg attcttttct ggttttgttt ttgctttggg ctttattttt
     5341 tttgtgtgta ctgtactata ttgtaaaagg gattttagca gagactttag tctttgggac
     5401 aagagaacag gaatgctggg ctgtttactt taggtggaga atccatcttc agacctttgg
     5461 actattttct ttcaactcca gtgtatagaa aaaccaaact acgacctcag agcagagtat
     5521 taatgaaaag cacaaaaaga ggaactaagt tcagcgaggg gtggggggag gggggagatt
     5581 tttcttttta aaaataatga tgcttaggac atttgttttt cagttcaagt gctcttcagc
     5641 actgtctgtc tctcccaatc tgaagaccca ccttcacatt tttctcttgt tttccctcct
     5701 ctctccttcc ctatcttctt ggttaagtga gtttcctcct gttgtgtccc ccactggtga
     5761 ccccctgctt ccctcctctc tttttccctt tggcagctgc aatacacggt gttattttgg
     5821 ggaaataaat ctaacgaagc ctcgccttcc atgccgagcg ttgtcccggc tctgggaggg
     5881 aaaggtctgt ctttgggatg ctcaatggtc ttctttgccc ttcgtctttt cttccccaac
     5941 ctacccttcc ctgcccacct tgttttctgt tctcctttta ttaggaattc ccaagtgaat
     6001 tttattaatg tgggagtgga acagatgcta aaagctatcc aagattttgt ttttgttttt
     6061 aattttttgt ttccttccct ttcctccccg tcccatgcgt caaacgttct gtgtaacctc
     6121 cattaaattt ggtacaaaac cactcaccag agctgtggtg tcagaaaaat aaaatatatt
     6181 gtttcttaca aaa
//
LOCUS       XM_032649462            6198 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL9 transcription coactivator (BCL9),
            transcript variant X3, mRNA.
ACCESSION   XM_032649462
VERSION     XM_032649462.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6198
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6198
                     /gene="BCL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 11 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762476"
     CDS             674..4954
                     /gene="BCL9"
                     /codon_start=1
                     /product="B-cell CLL/lymphoma 9 protein isoform X1"
                     /protein_id="XP_032505353.1"
                     /db_xref="GeneID:116762476"
                     /translation="MHSSNPKVRNSPSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDS
                     KFSNQGKQGGSASQSQPSPCDSKSGGHTPKALPGPGGSMGLKNGAGNGAKGKGKRERS
                     ISADSFDQRDPGTPNDDSDMKECNSADHIKSQDSQHTPHSMTPSNATVPRSSTPSHGQ
                     TTAPEPTPAQKTPAKVVYVFSTEMANKAAEAVLKGQVETIVSFHIQNISNSKTERSTA
                     PLNTQISALRNDPKPLPQQPPAPANQDQTSSQNTRLQPTPPIPAPAPKPAAPPRPLDR
                     DSPGVENKLIPSVGSPASSTPLPPDGTGPNSTPNNRAVTPVSQGSSSSSADPKGPPPP
                     PLSSGEPPPLGENPDGLSQEQLEHRERSLQTLRDIQRMLFPDEKEFPGGQSGGPQQST
                     GVLDGPQKKPEGPIQAMMAQSQSLGKGPGPRTDVGAPFGPQGHRDVPFSPDEMVPPSM
                     NSQSGPIGPDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQVVVQQCSLQDMMVHQHGPR
                     GVVRGPPPPYQMTPGEAWGPGGAEPFADGINMPHSLPPRAMAPHPNMPGSQMRLPGFA
                     GMMNSEMEGPSVPNPASRPGLSGVSWPDDVPKIPDGRNFPPGQGVFSGPGRGERFPNP
                     QGLSEEMFQQQLAEKQLGLPPGMSVEGIRPGMEMNRLIPGSQRHMEPGNNPIFPRIPV
                     EGPLSPSRGDFPKGMPPQMGPGRELEFGMVPSGMKGDVSLNVNMGSNSQMIPQKMREA
                     GVGPEEMMKLRAGGADMLPAQQKMVPLPFGEHPQQEYGMGPRPFLPMSQGPGSNSGLR
                     NLREPVGPDQRTNSRLSHMPPLPLNPSSNPTSLNTAPSVQRGLGRKPVDLSVAGSQVH
                     SPGINPLKSPTMRQVQSPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPVLGSA
                     AASPVHLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGGPPP
                     PTASQSASVSIPGSLPSSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIK
                     TVASSDDDSPPARSPNLPSMNNMPGLGINTQNPRISGPNPVVPMPTLSPMGMTQPLSH
                     SNQMPSPNAMGPTIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQS
                     PPQQVPFPHNGPSGGQGNFPGGMGFPGEGPLGRPSNLPQSSADAALCKPGGPGGPDSF
                     AVLGNSMPSVFTDPDLQEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGRKQ
                     PQGPGPGFSHMQGMMGEQAPRMGLALPGMGGPGPVGTPDIPLGTAPSMPGHNPMRPPA
                     FLQQGMMGPHHRMMSPAQSTMPGQPTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSP
                     GMMMSMQGMMGPQQNIMIPPQMRPRSMAADVGMAGFSQGPGNPGNMMF"
     misc_feature    1721..1831
                     /gene="BCL9"
                     /note="B-cell lymphoma 9 protein; Region: BCL9; pfam11502"
                     /db_xref="CDD:431912"
     misc_feature    <2384..4156
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <3425..4903
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 cctaagttgc tttgatgttg tcctagtgtc ttgataccag gaggccaggg attgcaggaa
       61 aagggtcttt tttgtcttca ttcactttcc cccctcagtt tctgaaatga ttctccagaa
      121 tttctcctca taaaaaagag gaacgtcgct gaagataaat gaactcaccg acacagctga
      181 ttgaggactg aatgtgggac tagctggtgt tactccactt tgacctaaaa attcctttct
      241 gtttgggagg cagagatcac tcttggaaag ttcctctgtg tcccaatgtt agaagagaga
      301 gcaaattgga catcttgaaa ggtgagggtc acctttgaga caggggttcc tggactccgc
      361 aagctcctcc cctccaggat gagcactgct gtatcgtgac ccttggggtt ttgtgtgccc
      421 tggagatgcg agattttcct ttggcagcag gaggcacaca cccagagaat gctggagccg
      481 caaggggaca ggacccactt ccacagcgga gaaaaacaaa gaggaaaaag gcgtgcaggt
      541 ggccagcgct aagggactca cccaacaagc agtgggccac tgccgctgtc ctcagcagct
      601 gtttctgctg cagcccgaga ggaactcggt gagcccgtcc ctgtttgtgg ctgcaagctc
      661 aggatttcaa tcaatgcatt ccagtaaccc taaagtgagg aactctccgt caggaaacac
      721 acagagtagc cctaagtcaa agcaggaggt gatggtccgt ccccctacag tgatgtcccc
      781 atctggaaac ccccagctgg attccaaatt ctccaatcag ggtaaacagg ggggctcagc
      841 cagccaatcc cagccatccc cctgtgactc caagagtggg ggccataccc ctaaagcact
      901 ccctggccca ggtgggagca tggggctgaa gaatggggct ggaaatggtg ccaagggcaa
      961 ggggaaaagg gagcgaagta tttccgccga ctcctttgat cagagagatc ctgggactcc
     1021 aaacgatgac tctgacatga aagaatgtaa ttctgctgac cacataaagt cccaggattc
     1081 ccagcacacg ccacactcaa tgaccccgtc aaatgctaca gtccccaggt cttccacccc
     1141 ctcccatggc cagactactg ccccagagcc cacacctgct cagaagactc ccgccaaagt
     1201 ggtgtatgtg ttttctactg agatggccaa taaagctgca gaagctgtat tgaagggcca
     1261 ggttgaaact attgtctctt tccacatcca gaacatctct aacagcaaga cagagagaag
     1321 cacagcccct ctgaacacac agatatctgc ccttcggaat gatccgaaac ctctcccaca
     1381 acagcccccc gctccagcca accaggacca gacttcctcc cagaacacca gactgcagcc
     1441 aactccaccc attccggcac cagcacccaa gcctgccgcc cccccgcgtc ccctggaccg
     1501 ggatagtccc ggggtagaaa acaaactgat tccttctgta ggcagccctg ccagctccac
     1561 tccactgccg ccagacggta ccgggccaaa ctcgacgccc aacaaccgag cagtgactcc
     1621 cgtttcccag gggagcagta gctcttcagc agatcccaaa ggccccccac ctccaccgtt
     1681 gtccagtgga gagccccccc cgctgggaga gaaccccgac ggactgtctc aggagcagct
     1741 ggagcaccgg gagcgctcct tacagacgct cagagatatc cagcgcatgc ttttccctga
     1801 tgagaaagaa ttcccgggag gacagagtgg gggaccccag cagagtactg gggtgttaga
     1861 tggacctcag aaaaaaccag aagggccaat acaggccatg atggctcaat cccaaagcct
     1921 aggtaaggga cctgggcccc ggacagacgt gggggctcca tttggccctc agggacacag
     1981 agatgtgccc ttctctccgg atgaaatggt tccaccttcc atgaactccc agtctgggcc
     2041 cattggaccc gaccacctgg atcacatgac ccctgagcag atagcgtggc tgaagctgca
     2101 gcaggagttc tatgaggaga agaggagaaa gcaggagcaa gtggtcgtgc agcagtgctc
     2161 cctccaggat atgatggtcc atcagcacgg gccgcgggga gtggtccgag ggcctccccc
     2221 tccgtaccag atgacccccg gtgaggcctg ggggcctggg ggtgcagagc cctttgctga
     2281 cgggatcaac atgccccatt ctctgccccc gagggccatg gctccccacc ccaacatgcc
     2341 aggtagccag atgcgcctcc ctggatttgc aggaatgatg aactctgaaa tggaggggcc
     2401 tagtgtcccc aacccagcat ctagaccagg tctctctgga gtcagctggc cagacgatgt
     2461 gccaaaaatc ccagacggtc gaaacttccc gcctggccag ggcgtcttca gtggtcctgg
     2521 ccgaggggaa cgtttcccaa acccccaagg attgtctgaa gagatgtttc aacagcagct
     2581 ggcagagaaa cagctgggtc tgcccccggg gatgagcgtg gaaggcatca ggcccggcat
     2641 ggagatgaac aggctgatcc ctggctccca gcgacacatg gagccgggga ataatcccat
     2701 cttccctcgc ataccagtag agggcccgct gagcccttct aggggtgact ttccaaaagg
     2761 aatgccccca cagatgggcc ccggtcggga acttgagttt gggatggttc ccagtgggat
     2821 gaagggagat gtcagtctaa atgtcaacat gggatccaac tctcagatga tacctcagaa
     2881 gatgagagag gctggggtgg ggcccgagga gatgatgaaa ctccgcgccg gcggtgcaga
     2941 catgctacct gctcagcaga agatggtgcc cctgcccttt ggcgagcacc ctcagcaaga
     3001 gtatggcatg ggccccaggc cgttcctccc catgtctcag ggtccaggca gcaacagtgg
     3061 cttgcggaat ctcagagaac cagttgggcc cgaccaaagg actaacagcc ggctcagtca
     3121 tatgccacca ctacctctca acccttctag taaccccact agcctcaaca ctgctccttc
     3181 cgttcagcgc ggcctggggc ggaagcccgt ggatctctct gtggcaggca gccaggtgca
     3241 ttccccaggc attaaccctc tgaaatctcc cacgatgcgc caagtccagt cgccaatgct
     3301 gggctcgccc tcggggaacc tcaagtcccc ccagactcca tcgcagctgg caggcatgct
     3361 ggcgggccca gctgctgctg cttccattaa gtccccccct gtcttggggt ctgctgctgc
     3421 ttcgcctgtt cacctcaagt ctccatcact tcccgcccca tcaccgggat ggacctcctc
     3481 tccaaagcct ccccttcaga gccccgggat ccctccaaac cataaagcac ccctcaccat
     3541 ggcctcccca gccatgctgg gaagtgtaga gtcaggtggc cccccacctc ctacagccag
     3601 ccagtctgcc tctgtgagta tcccgggaag tcttccctct agtacacctt acaccatgcc
     3661 tccagagccg accctttccc agaacccact gtctattatg atgtctcgaa tgtccaagtt
     3721 tgcaatgccc agttctaccc cgttatacca cgatgccatc aagactgtgg ccagctcaga
     3781 tgacgactcc cctccagctc gttctcccaa cttgccatca atgaataata tgccaggact
     3841 gggcattaat acacagaatc ctcgaatttc aggtccaaac cccgtggttc caatgccaac
     3901 cctcagccca atgggaatga cccagccact ttctcactcc aatcagatgc cctctccgaa
     3961 tgccatggga cccaccatac ctcctcatgg ggtcccgatg gggcctggct tgatgtcaca
     4021 caatcctatc atggggcatg ggtcccagga gcctccgatg gtacctcaag gacggatggg
     4081 tttcccccag ggcttccctc cagttcagtc tcctccacag caggttccat ttcctcacaa
     4141 tggccccagt ggggggcagg gcaacttccc aggagggatg ggtttcccag gagaagggcc
     4201 ccttggccgc cccagcaacc tgccccaaag ttcagcagat gcagcacttt gcaagcctgg
     4261 aggcccaggg ggtcctgact cctttgctgt cctggggaac agcatgcctt cagtgtttac
     4321 agacccagat ctacaggagg tcatccgacc tggagccacc ggaatacctg agtttgatct
     4381 gtctcgtatt attccatctg agaagcctag ccagacactg caatatttcc ctcgagggga
     4441 agtcccaggc cgtaaacagc cccagggtcc tggacctggg ttttcgcaca tgcaggggat
     4501 gatgggcgaa caagccccca gaatgggact agcattacct ggcatgggag gtccagggcc
     4561 agtgggaact ccggacatcc ctcttggtac agctccatcc atgccaggcc acaacccaat
     4621 gagaccacca gcctttctcc agcaaggcat gatgggacct caccatcgga tgatgtcacc
     4681 agcacaatct acaatgcccg gccagcccac cctgatgagc aatccagctg ctgccgtggg
     4741 catgattcct ggcaaggatc gagggcctgc cgggctctac acccaccctg ggcctgtggg
     4801 atctccaggc atgatgatgt ccatgcaggg catgatggga ccccaacaga acatcatgat
     4861 ccccccacag atgaggcccc ggagcatggc cgctgacgtg ggcatggctg gatttagcca
     4921 aggacctggc aacccaggaa acatgatgtt ttaagctgct aagattggat gtgccgatcc
     4981 ttgtcaagat gagattccag gtcctgagag ctgctttgag ggagttccag gagtactgtt
     5041 ggtcatgcaa taggagaaca gagacccaag ggctgctttg ggggaggggg gaactcgaga
     5101 atgtatggat ttatctgaaa acaaattatt catttaatca acaggtgtgt tttttttaag
     5161 atttattttt taaaaattat ttttgtggac ttgggtatcc catgatggca cctacttttg
     5221 ggaatctgta gccgtgcttt gagaattgcc atgggtcatg tgttgcacca ttctctgtat
     5281 gtttacgtcc tttggactgg cttctcccag gattcttttc tggttttgtt tttgctttgg
     5341 gctttatttt ttttgtgtgt actgtactat attgtaaaag ggattttagc agagacttta
     5401 gtctttggga caagagaaca ggaatgctgg gctgtttact ttaggtggag aatccatctt
     5461 cagacctttg gactattttc tttcaactcc agtgtataga aaaaccaaac tacgacctca
     5521 gagcagagta ttaatgaaaa gcacaaaaag aggaactaag ttcagcgagg ggtgggggga
     5581 ggggggagat ttttcttttt aaaaataatg atgcttagga catttgtttt tcagttcaag
     5641 tgctcttcag cactgtctgt ctctcccaat ctgaagaccc accttcacat ttttctcttg
     5701 ttttccctcc tctctccttc cctatcttct tggttaagtg agtttcctcc tgttgtgtcc
     5761 cccactggtg accccctgct tccctcctct ctttttccct ttggcagctg caatacacgg
     5821 tgttattttg gggaaataaa tctaacgaag cctcgccttc catgccgagc gttgtcccgg
     5881 ctctgggagg gaaaggtctg tctttgggat gctcaatggt cttctttgcc cttcgtcttt
     5941 tcttccccaa cctacccttc cctgcccacc ttgttttctg ttctcctttt attaggaatt
     6001 cccaagtgaa ttttattaat gtgggagtgg aacagatgct aaaagctatc caagattttg
     6061 tttttgtttt taattttttg tttccttccc tttcctcccc gtcccatgcg tcaaacgttc
     6121 tgtgtaacct ccattaaatt tggtacaaaa ccactcacca gagctgtggt gtcagaaaaa
     6181 taaaatatat tgtttctt
//
LOCUS       XM_032649472            6255 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL9 transcription coactivator (BCL9),
            transcript variant X4, mRNA.
ACCESSION   XM_032649472
VERSION     XM_032649472.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6255
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6255
                     /gene="BCL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 11 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762476"
     CDS             731..5011
                     /gene="BCL9"
                     /codon_start=1
                     /product="B-cell CLL/lymphoma 9 protein isoform X1"
                     /protein_id="XP_032505363.1"
                     /db_xref="GeneID:116762476"
                     /translation="MHSSNPKVRNSPSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDS
                     KFSNQGKQGGSASQSQPSPCDSKSGGHTPKALPGPGGSMGLKNGAGNGAKGKGKRERS
                     ISADSFDQRDPGTPNDDSDMKECNSADHIKSQDSQHTPHSMTPSNATVPRSSTPSHGQ
                     TTAPEPTPAQKTPAKVVYVFSTEMANKAAEAVLKGQVETIVSFHIQNISNSKTERSTA
                     PLNTQISALRNDPKPLPQQPPAPANQDQTSSQNTRLQPTPPIPAPAPKPAAPPRPLDR
                     DSPGVENKLIPSVGSPASSTPLPPDGTGPNSTPNNRAVTPVSQGSSSSSADPKGPPPP
                     PLSSGEPPPLGENPDGLSQEQLEHRERSLQTLRDIQRMLFPDEKEFPGGQSGGPQQST
                     GVLDGPQKKPEGPIQAMMAQSQSLGKGPGPRTDVGAPFGPQGHRDVPFSPDEMVPPSM
                     NSQSGPIGPDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQVVVQQCSLQDMMVHQHGPR
                     GVVRGPPPPYQMTPGEAWGPGGAEPFADGINMPHSLPPRAMAPHPNMPGSQMRLPGFA
                     GMMNSEMEGPSVPNPASRPGLSGVSWPDDVPKIPDGRNFPPGQGVFSGPGRGERFPNP
                     QGLSEEMFQQQLAEKQLGLPPGMSVEGIRPGMEMNRLIPGSQRHMEPGNNPIFPRIPV
                     EGPLSPSRGDFPKGMPPQMGPGRELEFGMVPSGMKGDVSLNVNMGSNSQMIPQKMREA
                     GVGPEEMMKLRAGGADMLPAQQKMVPLPFGEHPQQEYGMGPRPFLPMSQGPGSNSGLR
                     NLREPVGPDQRTNSRLSHMPPLPLNPSSNPTSLNTAPSVQRGLGRKPVDLSVAGSQVH
                     SPGINPLKSPTMRQVQSPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPVLGSA
                     AASPVHLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGGPPP
                     PTASQSASVSIPGSLPSSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIK
                     TVASSDDDSPPARSPNLPSMNNMPGLGINTQNPRISGPNPVVPMPTLSPMGMTQPLSH
                     SNQMPSPNAMGPTIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQS
                     PPQQVPFPHNGPSGGQGNFPGGMGFPGEGPLGRPSNLPQSSADAALCKPGGPGGPDSF
                     AVLGNSMPSVFTDPDLQEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGRKQ
                     PQGPGPGFSHMQGMMGEQAPRMGLALPGMGGPGPVGTPDIPLGTAPSMPGHNPMRPPA
                     FLQQGMMGPHHRMMSPAQSTMPGQPTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSP
                     GMMMSMQGMMGPQQNIMIPPQMRPRSMAADVGMAGFSQGPGNPGNMMF"
     misc_feature    1778..1888
                     /gene="BCL9"
                     /note="B-cell lymphoma 9 protein; Region: BCL9; pfam11502"
                     /db_xref="CDD:431912"
     misc_feature    <2441..4213
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <3482..4960
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 gaactgatac tcttatgtta tttatcatct cattctgttt atgaaagact tgcctgtagt
       61 ccctctagca tttcttttca tccagggctc accttgggtg gagacagact ctgacgcttc
      121 tcttatgact gtggaagtct ctcatgactc tgagtagagt gtgattccct tctgaaacgt
      181 gcctctggca aacaagagga ccaatgcagt ggaatgttct ggaagcatca tcaaggacca
      241 cagactgaat gtgggactag ctggtgttac tccactttga cctaaaaatt cctttctgtt
      301 tgggaggcag agatcactct tggaaagttc ctctgtgtcc caatgttaga agagagagca
      361 aattggacat cttgaaaggt gagggtcacc tttgagacag gggttcctgg actccgcaag
      421 ctcctcccct ccaggatgag cactgctgta tcgtgaccct tggggttttg tgtgccctgg
      481 agatgcgaga ttttcctttg gcagcaggag gcacacaccc agagaatgct ggagccgcaa
      541 ggggacagga cccacttcca cagcggagaa aaacaaagag gaaaaaggcg tgcaggtggc
      601 cagcgctaag ggactcaccc aacaagcagt gggccactgc cgctgtcctc agcagctgtt
      661 tctgctgcag cccgagagga actcggtgag cccgtccctg tttgtggctg caagctcagg
      721 atttcaatca atgcattcca gtaaccctaa agtgaggaac tctccgtcag gaaacacaca
      781 gagtagccct aagtcaaagc aggaggtgat ggtccgtccc cctacagtga tgtccccatc
      841 tggaaacccc cagctggatt ccaaattctc caatcagggt aaacaggggg gctcagccag
      901 ccaatcccag ccatccccct gtgactccaa gagtgggggc cataccccta aagcactccc
      961 tggcccaggt gggagcatgg ggctgaagaa tggggctgga aatggtgcca agggcaaggg
     1021 gaaaagggag cgaagtattt ccgccgactc ctttgatcag agagatcctg ggactccaaa
     1081 cgatgactct gacatgaaag aatgtaattc tgctgaccac ataaagtccc aggattccca
     1141 gcacacgcca cactcaatga ccccgtcaaa tgctacagtc cccaggtctt ccaccccctc
     1201 ccatggccag actactgccc cagagcccac acctgctcag aagactcccg ccaaagtggt
     1261 gtatgtgttt tctactgaga tggccaataa agctgcagaa gctgtattga agggccaggt
     1321 tgaaactatt gtctctttcc acatccagaa catctctaac agcaagacag agagaagcac
     1381 agcccctctg aacacacaga tatctgccct tcggaatgat ccgaaacctc tcccacaaca
     1441 gccccccgct ccagccaacc aggaccagac ttcctcccag aacaccagac tgcagccaac
     1501 tccacccatt ccggcaccag cacccaagcc tgccgccccc ccgcgtcccc tggaccggga
     1561 tagtcccggg gtagaaaaca aactgattcc ttctgtaggc agccctgcca gctccactcc
     1621 actgccgcca gacggtaccg ggccaaactc gacgcccaac aaccgagcag tgactcccgt
     1681 ttcccagggg agcagtagct cttcagcaga tcccaaaggc cccccacctc caccgttgtc
     1741 cagtggagag ccccccccgc tgggagagaa ccccgacgga ctgtctcagg agcagctgga
     1801 gcaccgggag cgctccttac agacgctcag agatatccag cgcatgcttt tccctgatga
     1861 gaaagaattc ccgggaggac agagtggggg accccagcag agtactgggg tgttagatgg
     1921 acctcagaaa aaaccagaag ggccaataca ggccatgatg gctcaatccc aaagcctagg
     1981 taagggacct gggccccgga cagacgtggg ggctccattt ggccctcagg gacacagaga
     2041 tgtgcccttc tctccggatg aaatggttcc accttccatg aactcccagt ctgggcccat
     2101 tggacccgac cacctggatc acatgacccc tgagcagata gcgtggctga agctgcagca
     2161 ggagttctat gaggagaaga ggagaaagca ggagcaagtg gtcgtgcagc agtgctccct
     2221 ccaggatatg atggtccatc agcacgggcc gcggggagtg gtccgagggc ctccccctcc
     2281 gtaccagatg acccccggtg aggcctgggg gcctgggggt gcagagccct ttgctgacgg
     2341 gatcaacatg ccccattctc tgcccccgag ggccatggct ccccacccca acatgccagg
     2401 tagccagatg cgcctccctg gatttgcagg aatgatgaac tctgaaatgg aggggcctag
     2461 tgtccccaac ccagcatcta gaccaggtct ctctggagtc agctggccag acgatgtgcc
     2521 aaaaatccca gacggtcgaa acttcccgcc tggccagggc gtcttcagtg gtcctggccg
     2581 aggggaacgt ttcccaaacc cccaaggatt gtctgaagag atgtttcaac agcagctggc
     2641 agagaaacag ctgggtctgc ccccggggat gagcgtggaa ggcatcaggc ccggcatgga
     2701 gatgaacagg ctgatccctg gctcccagcg acacatggag ccggggaata atcccatctt
     2761 ccctcgcata ccagtagagg gcccgctgag cccttctagg ggtgactttc caaaaggaat
     2821 gcccccacag atgggccccg gtcgggaact tgagtttggg atggttccca gtgggatgaa
     2881 gggagatgtc agtctaaatg tcaacatggg atccaactct cagatgatac ctcagaagat
     2941 gagagaggct ggggtggggc ccgaggagat gatgaaactc cgcgccggcg gtgcagacat
     3001 gctacctgct cagcagaaga tggtgcccct gccctttggc gagcaccctc agcaagagta
     3061 tggcatgggc cccaggccgt tcctccccat gtctcagggt ccaggcagca acagtggctt
     3121 gcggaatctc agagaaccag ttgggcccga ccaaaggact aacagccggc tcagtcatat
     3181 gccaccacta cctctcaacc cttctagtaa ccccactagc ctcaacactg ctccttccgt
     3241 tcagcgcggc ctggggcgga agcccgtgga tctctctgtg gcaggcagcc aggtgcattc
     3301 cccaggcatt aaccctctga aatctcccac gatgcgccaa gtccagtcgc caatgctggg
     3361 ctcgccctcg gggaacctca agtcccccca gactccatcg cagctggcag gcatgctggc
     3421 gggcccagct gctgctgctt ccattaagtc cccccctgtc ttggggtctg ctgctgcttc
     3481 gcctgttcac ctcaagtctc catcacttcc cgccccatca ccgggatgga cctcctctcc
     3541 aaagcctccc cttcagagcc ccgggatccc tccaaaccat aaagcacccc tcaccatggc
     3601 ctccccagcc atgctgggaa gtgtagagtc aggtggcccc ccacctccta cagccagcca
     3661 gtctgcctct gtgagtatcc cgggaagtct tccctctagt acaccttaca ccatgcctcc
     3721 agagccgacc ctttcccaga acccactgtc tattatgatg tctcgaatgt ccaagtttgc
     3781 aatgcccagt tctaccccgt tataccacga tgccatcaag actgtggcca gctcagatga
     3841 cgactcccct ccagctcgtt ctcccaactt gccatcaatg aataatatgc caggactggg
     3901 cattaataca cagaatcctc gaatttcagg tccaaacccc gtggttccaa tgccaaccct
     3961 cagcccaatg ggaatgaccc agccactttc tcactccaat cagatgccct ctccgaatgc
     4021 catgggaccc accatacctc ctcatggggt cccgatgggg cctggcttga tgtcacacaa
     4081 tcctatcatg gggcatgggt cccaggagcc tccgatggta cctcaaggac ggatgggttt
     4141 cccccagggc ttccctccag ttcagtctcc tccacagcag gttccatttc ctcacaatgg
     4201 ccccagtggg gggcagggca acttcccagg agggatgggt ttcccaggag aagggcccct
     4261 tggccgcccc agcaacctgc cccaaagttc agcagatgca gcactttgca agcctggagg
     4321 cccagggggt cctgactcct ttgctgtcct ggggaacagc atgccttcag tgtttacaga
     4381 cccagatcta caggaggtca tccgacctgg agccaccgga atacctgagt ttgatctgtc
     4441 tcgtattatt ccatctgaga agcctagcca gacactgcaa tatttccctc gaggggaagt
     4501 cccaggccgt aaacagcccc agggtcctgg acctgggttt tcgcacatgc aggggatgat
     4561 gggcgaacaa gcccccagaa tgggactagc attacctggc atgggaggtc cagggccagt
     4621 gggaactccg gacatccctc ttggtacagc tccatccatg ccaggccaca acccaatgag
     4681 accaccagcc tttctccagc aaggcatgat gggacctcac catcggatga tgtcaccagc
     4741 acaatctaca atgcccggcc agcccaccct gatgagcaat ccagctgctg ccgtgggcat
     4801 gattcctggc aaggatcgag ggcctgccgg gctctacacc caccctgggc ctgtgggatc
     4861 tccaggcatg atgatgtcca tgcagggcat gatgggaccc caacagaaca tcatgatccc
     4921 cccacagatg aggccccgga gcatggccgc tgacgtgggc atggctggat ttagccaagg
     4981 acctggcaac ccaggaaaca tgatgtttta agctgctaag attggatgtg ccgatccttg
     5041 tcaagatgag attccaggtc ctgagagctg ctttgaggga gttccaggag tactgttggt
     5101 catgcaatag gagaacagag acccaagggc tgctttgggg gaggggggaa ctcgagaatg
     5161 tatggattta tctgaaaaca aattattcat ttaatcaaca ggtgtgtttt ttttaagatt
     5221 tattttttaa aaattatttt tgtggacttg ggtatcccat gatggcacct acttttggga
     5281 atctgtagcc gtgctttgag aattgccatg ggtcatgtgt tgcaccattc tctgtatgtt
     5341 tacgtccttt ggactggctt ctcccaggat tcttttctgg ttttgttttt gctttgggct
     5401 ttattttttt tgtgtgtact gtactatatt gtaaaaggga ttttagcaga gactttagtc
     5461 tttgggacaa gagaacagga atgctgggct gtttacttta ggtggagaat ccatcttcag
     5521 acctttggac tattttcttt caactccagt gtatagaaaa accaaactac gacctcagag
     5581 cagagtatta atgaaaagca caaaaagagg aactaagttc agcgaggggt ggggggaggg
     5641 gggagatttt tctttttaaa aataatgatg cttaggacat ttgtttttca gttcaagtgc
     5701 tcttcagcac tgtctgtctc tcccaatctg aagacccacc ttcacatttt tctcttgttt
     5761 tccctcctct ctccttccct atcttcttgg ttaagtgagt ttcctcctgt tgtgtccccc
     5821 actggtgacc ccctgcttcc ctcctctctt tttccctttg gcagctgcaa tacacggtgt
     5881 tattttgggg aaataaatct aacgaagcct cgccttccat gccgagcgtt gtcccggctc
     5941 tgggagggaa aggtctgtct ttgggatgct caatggtctt ctttgccctt cgtcttttct
     6001 tccccaacct acccttccct gcccaccttg ttttctgttc tccttttatt aggaattccc
     6061 aagtgaattt tattaatgtg ggagtggaac agatgctaaa agctatccaa gattttgttt
     6121 ttgtttttaa ttttttgttt ccttcccttt cctccccgtc ccatgcgtca aacgttctgt
     6181 gtaacctcca ttaaatttgg tacaaaacca ctcaccagag ctgtggtgtc agaaaaataa
     6241 aatatattgt ttctt
//
LOCUS       XM_032649481            6248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL9 transcription coactivator (BCL9),
            transcript variant X5, mRNA.
ACCESSION   XM_032649481
VERSION     XM_032649481.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6248
                     /gene="BCL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 11 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762476"
     CDS             724..5004
                     /gene="BCL9"
                     /codon_start=1
                     /product="B-cell CLL/lymphoma 9 protein isoform X1"
                     /protein_id="XP_032505372.1"
                     /db_xref="GeneID:116762476"
                     /translation="MHSSNPKVRNSPSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDS
                     KFSNQGKQGGSASQSQPSPCDSKSGGHTPKALPGPGGSMGLKNGAGNGAKGKGKRERS
                     ISADSFDQRDPGTPNDDSDMKECNSADHIKSQDSQHTPHSMTPSNATVPRSSTPSHGQ
                     TTAPEPTPAQKTPAKVVYVFSTEMANKAAEAVLKGQVETIVSFHIQNISNSKTERSTA
                     PLNTQISALRNDPKPLPQQPPAPANQDQTSSQNTRLQPTPPIPAPAPKPAAPPRPLDR
                     DSPGVENKLIPSVGSPASSTPLPPDGTGPNSTPNNRAVTPVSQGSSSSSADPKGPPPP
                     PLSSGEPPPLGENPDGLSQEQLEHRERSLQTLRDIQRMLFPDEKEFPGGQSGGPQQST
                     GVLDGPQKKPEGPIQAMMAQSQSLGKGPGPRTDVGAPFGPQGHRDVPFSPDEMVPPSM
                     NSQSGPIGPDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQVVVQQCSLQDMMVHQHGPR
                     GVVRGPPPPYQMTPGEAWGPGGAEPFADGINMPHSLPPRAMAPHPNMPGSQMRLPGFA
                     GMMNSEMEGPSVPNPASRPGLSGVSWPDDVPKIPDGRNFPPGQGVFSGPGRGERFPNP
                     QGLSEEMFQQQLAEKQLGLPPGMSVEGIRPGMEMNRLIPGSQRHMEPGNNPIFPRIPV
                     EGPLSPSRGDFPKGMPPQMGPGRELEFGMVPSGMKGDVSLNVNMGSNSQMIPQKMREA
                     GVGPEEMMKLRAGGADMLPAQQKMVPLPFGEHPQQEYGMGPRPFLPMSQGPGSNSGLR
                     NLREPVGPDQRTNSRLSHMPPLPLNPSSNPTSLNTAPSVQRGLGRKPVDLSVAGSQVH
                     SPGINPLKSPTMRQVQSPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPVLGSA
                     AASPVHLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGGPPP
                     PTASQSASVSIPGSLPSSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIK
                     TVASSDDDSPPARSPNLPSMNNMPGLGINTQNPRISGPNPVVPMPTLSPMGMTQPLSH
                     SNQMPSPNAMGPTIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQS
                     PPQQVPFPHNGPSGGQGNFPGGMGFPGEGPLGRPSNLPQSSADAALCKPGGPGGPDSF
                     AVLGNSMPSVFTDPDLQEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGRKQ
                     PQGPGPGFSHMQGMMGEQAPRMGLALPGMGGPGPVGTPDIPLGTAPSMPGHNPMRPPA
                     FLQQGMMGPHHRMMSPAQSTMPGQPTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSP
                     GMMMSMQGMMGPQQNIMIPPQMRPRSMAADVGMAGFSQGPGNPGNMMF"
     misc_feature    1771..1881
                     /gene="BCL9"
                     /note="B-cell lymphoma 9 protein; Region: BCL9; pfam11502"
                     /db_xref="CDD:431912"
     misc_feature    <2434..4206
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <3475..4953
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 caatggagcc tatgtgtgct tgcgggagtg ggacggcgcc gccgccgccg ctgccgccgc
       61 cggggggaga cgctgcgccg ccgctgccgc tggcccgggc cccggccccc cggggctgag
      121 agccgccccg gaccgaagcc ccctcccata ctctgttcct cttctcccct cccccactcc
      181 tgcctcgggg gactgaatgt gggactagct ggtgttactc cactttgacc taaaaattcc
      241 tttctgtttg ggaggcagag atcactcttg gaaagttcct ctgtgtccca atgttagaag
      301 agagagcaaa ttggacatct tgaaagcagt tcccaaggca gaggtcatca agttaaatgc
      361 aagtcataac tgtgagggtc acctttgaga caggggttcc tggactccgc aagctcctcc
      421 cctccaggat gagcactgct gtatcgtgac ccttggggtt ttgtgtgccc tggagatgcg
      481 agattttcct ttggcagcag gaggcacaca cccagagaat gctggagccg caaggggaca
      541 ggacccactt ccacagcgga gaaaaacaaa gaggaaaaag gcgtgcaggt ggccagcgct
      601 aagggactca cccaacaagc agtgggccac tgccgctgtc ctcagcagct gtttctgctg
      661 cagcccgaga ggaactcggt gagcccgtcc ctgtttgtgg ctgcaagctc aggatttcaa
      721 tcaatgcatt ccagtaaccc taaagtgagg aactctccgt caggaaacac acagagtagc
      781 cctaagtcaa agcaggaggt gatggtccgt ccccctacag tgatgtcccc atctggaaac
      841 ccccagctgg attccaaatt ctccaatcag ggtaaacagg ggggctcagc cagccaatcc
      901 cagccatccc cctgtgactc caagagtggg ggccataccc ctaaagcact ccctggccca
      961 ggtgggagca tggggctgaa gaatggggct ggaaatggtg ccaagggcaa ggggaaaagg
     1021 gagcgaagta tttccgccga ctcctttgat cagagagatc ctgggactcc aaacgatgac
     1081 tctgacatga aagaatgtaa ttctgctgac cacataaagt cccaggattc ccagcacacg
     1141 ccacactcaa tgaccccgtc aaatgctaca gtccccaggt cttccacccc ctcccatggc
     1201 cagactactg ccccagagcc cacacctgct cagaagactc ccgccaaagt ggtgtatgtg
     1261 ttttctactg agatggccaa taaagctgca gaagctgtat tgaagggcca ggttgaaact
     1321 attgtctctt tccacatcca gaacatctct aacagcaaga cagagagaag cacagcccct
     1381 ctgaacacac agatatctgc ccttcggaat gatccgaaac ctctcccaca acagcccccc
     1441 gctccagcca accaggacca gacttcctcc cagaacacca gactgcagcc aactccaccc
     1501 attccggcac cagcacccaa gcctgccgcc cccccgcgtc ccctggaccg ggatagtccc
     1561 ggggtagaaa acaaactgat tccttctgta ggcagccctg ccagctccac tccactgccg
     1621 ccagacggta ccgggccaaa ctcgacgccc aacaaccgag cagtgactcc cgtttcccag
     1681 gggagcagta gctcttcagc agatcccaaa ggccccccac ctccaccgtt gtccagtgga
     1741 gagccccccc cgctgggaga gaaccccgac ggactgtctc aggagcagct ggagcaccgg
     1801 gagcgctcct tacagacgct cagagatatc cagcgcatgc ttttccctga tgagaaagaa
     1861 ttcccgggag gacagagtgg gggaccccag cagagtactg gggtgttaga tggacctcag
     1921 aaaaaaccag aagggccaat acaggccatg atggctcaat cccaaagcct aggtaaggga
     1981 cctgggcccc ggacagacgt gggggctcca tttggccctc agggacacag agatgtgccc
     2041 ttctctccgg atgaaatggt tccaccttcc atgaactccc agtctgggcc cattggaccc
     2101 gaccacctgg atcacatgac ccctgagcag atagcgtggc tgaagctgca gcaggagttc
     2161 tatgaggaga agaggagaaa gcaggagcaa gtggtcgtgc agcagtgctc cctccaggat
     2221 atgatggtcc atcagcacgg gccgcgggga gtggtccgag ggcctccccc tccgtaccag
     2281 atgacccccg gtgaggcctg ggggcctggg ggtgcagagc cctttgctga cgggatcaac
     2341 atgccccatt ctctgccccc gagggccatg gctccccacc ccaacatgcc aggtagccag
     2401 atgcgcctcc ctggatttgc aggaatgatg aactctgaaa tggaggggcc tagtgtcccc
     2461 aacccagcat ctagaccagg tctctctgga gtcagctggc cagacgatgt gccaaaaatc
     2521 ccagacggtc gaaacttccc gcctggccag ggcgtcttca gtggtcctgg ccgaggggaa
     2581 cgtttcccaa acccccaagg attgtctgaa gagatgtttc aacagcagct ggcagagaaa
     2641 cagctgggtc tgcccccggg gatgagcgtg gaaggcatca ggcccggcat ggagatgaac
     2701 aggctgatcc ctggctccca gcgacacatg gagccgggga ataatcccat cttccctcgc
     2761 ataccagtag agggcccgct gagcccttct aggggtgact ttccaaaagg aatgccccca
     2821 cagatgggcc ccggtcggga acttgagttt gggatggttc ccagtgggat gaagggagat
     2881 gtcagtctaa atgtcaacat gggatccaac tctcagatga tacctcagaa gatgagagag
     2941 gctggggtgg ggcccgagga gatgatgaaa ctccgcgccg gcggtgcaga catgctacct
     3001 gctcagcaga agatggtgcc cctgcccttt ggcgagcacc ctcagcaaga gtatggcatg
     3061 ggccccaggc cgttcctccc catgtctcag ggtccaggca gcaacagtgg cttgcggaat
     3121 ctcagagaac cagttgggcc cgaccaaagg actaacagcc ggctcagtca tatgccacca
     3181 ctacctctca acccttctag taaccccact agcctcaaca ctgctccttc cgttcagcgc
     3241 ggcctggggc ggaagcccgt ggatctctct gtggcaggca gccaggtgca ttccccaggc
     3301 attaaccctc tgaaatctcc cacgatgcgc caagtccagt cgccaatgct gggctcgccc
     3361 tcggggaacc tcaagtcccc ccagactcca tcgcagctgg caggcatgct ggcgggccca
     3421 gctgctgctg cttccattaa gtccccccct gtcttggggt ctgctgctgc ttcgcctgtt
     3481 cacctcaagt ctccatcact tcccgcccca tcaccgggat ggacctcctc tccaaagcct
     3541 ccccttcaga gccccgggat ccctccaaac cataaagcac ccctcaccat ggcctcccca
     3601 gccatgctgg gaagtgtaga gtcaggtggc cccccacctc ctacagccag ccagtctgcc
     3661 tctgtgagta tcccgggaag tcttccctct agtacacctt acaccatgcc tccagagccg
     3721 accctttccc agaacccact gtctattatg atgtctcgaa tgtccaagtt tgcaatgccc
     3781 agttctaccc cgttatacca cgatgccatc aagactgtgg ccagctcaga tgacgactcc
     3841 cctccagctc gttctcccaa cttgccatca atgaataata tgccaggact gggcattaat
     3901 acacagaatc ctcgaatttc aggtccaaac cccgtggttc caatgccaac cctcagccca
     3961 atgggaatga cccagccact ttctcactcc aatcagatgc cctctccgaa tgccatggga
     4021 cccaccatac ctcctcatgg ggtcccgatg gggcctggct tgatgtcaca caatcctatc
     4081 atggggcatg ggtcccagga gcctccgatg gtacctcaag gacggatggg tttcccccag
     4141 ggcttccctc cagttcagtc tcctccacag caggttccat ttcctcacaa tggccccagt
     4201 ggggggcagg gcaacttccc aggagggatg ggtttcccag gagaagggcc ccttggccgc
     4261 cccagcaacc tgccccaaag ttcagcagat gcagcacttt gcaagcctgg aggcccaggg
     4321 ggtcctgact cctttgctgt cctggggaac agcatgcctt cagtgtttac agacccagat
     4381 ctacaggagg tcatccgacc tggagccacc ggaatacctg agtttgatct gtctcgtatt
     4441 attccatctg agaagcctag ccagacactg caatatttcc ctcgagggga agtcccaggc
     4501 cgtaaacagc cccagggtcc tggacctggg ttttcgcaca tgcaggggat gatgggcgaa
     4561 caagccccca gaatgggact agcattacct ggcatgggag gtccagggcc agtgggaact
     4621 ccggacatcc ctcttggtac agctccatcc atgccaggcc acaacccaat gagaccacca
     4681 gcctttctcc agcaaggcat gatgggacct caccatcgga tgatgtcacc agcacaatct
     4741 acaatgcccg gccagcccac cctgatgagc aatccagctg ctgccgtggg catgattcct
     4801 ggcaaggatc gagggcctgc cgggctctac acccaccctg ggcctgtggg atctccaggc
     4861 atgatgatgt ccatgcaggg catgatggga ccccaacaga acatcatgat ccccccacag
     4921 atgaggcccc ggagcatggc cgctgacgtg ggcatggctg gatttagcca aggacctggc
     4981 aacccaggaa acatgatgtt ttaagctgct aagattggat gtgccgatcc ttgtcaagat
     5041 gagattccag gtcctgagag ctgctttgag ggagttccag gagtactgtt ggtcatgcaa
     5101 taggagaaca gagacccaag ggctgctttg ggggaggggg gaactcgaga atgtatggat
     5161 ttatctgaaa acaaattatt catttaatca acaggtgtgt tttttttaag atttattttt
     5221 taaaaattat ttttgtggac ttgggtatcc catgatggca cctacttttg ggaatctgta
     5281 gccgtgcttt gagaattgcc atgggtcatg tgttgcacca ttctctgtat gtttacgtcc
     5341 tttggactgg cttctcccag gattcttttc tggttttgtt tttgctttgg gctttatttt
     5401 ttttgtgtgt actgtactat attgtaaaag ggattttagc agagacttta gtctttggga
     5461 caagagaaca ggaatgctgg gctgtttact ttaggtggag aatccatctt cagacctttg
     5521 gactattttc tttcaactcc agtgtataga aaaaccaaac tacgacctca gagcagagta
     5581 ttaatgaaaa gcacaaaaag aggaactaag ttcagcgagg ggtgggggga ggggggagat
     5641 ttttcttttt aaaaataatg atgcttagga catttgtttt tcagttcaag tgctcttcag
     5701 cactgtctgt ctctcccaat ctgaagaccc accttcacat ttttctcttg ttttccctcc
     5761 tctctccttc cctatcttct tggttaagtg agtttcctcc tgttgtgtcc cccactggtg
     5821 accccctgct tccctcctct ctttttccct ttggcagctg caatacacgg tgttattttg
     5881 gggaaataaa tctaacgaag cctcgccttc catgccgagc gttgtcccgg ctctgggagg
     5941 gaaaggtctg tctttgggat gctcaatggt cttctttgcc cttcgtcttt tcttccccaa
     6001 cctacccttc cctgcccacc ttgttttctg ttctcctttt attaggaatt cccaagtgaa
     6061 ttttattaat gtgggagtgg aacagatgct aaaagctatc caagattttg tttttgtttt
     6121 taattttttg tttccttccc tttcctcccc gtcccatgcg tcaaacgttc tgtgtaacct
     6181 ccattaaatt tggtacaaaa ccactcacca gagctgtggt gtcagaaaaa taaaatatat
     6241 tgtttctt
//
LOCUS       XM_032649492            6200 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL9 transcription coactivator (BCL9),
            transcript variant X6, mRNA.
ACCESSION   XM_032649492
VERSION     XM_032649492.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6200
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6200
                     /gene="BCL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762476"
     CDS             679..4956
                     /gene="BCL9"
                     /codon_start=1
                     /product="B-cell CLL/lymphoma 9 protein isoform X2"
                     /protein_id="XP_032505383.1"
                     /db_xref="GeneID:116762476"
                     /translation="MHSSNPKVRNSPSGNTQSPKSKQEVMVRPPTVMSPSGNPQLDSK
                     FSNQGKQGGSASQSQPSPCDSKSGGHTPKALPGPGGSMGLKNGAGNGAKGKGKRERSI
                     SADSFDQRDPGTPNDDSDMKECNSADHIKSQDSQHTPHSMTPSNATVPRSSTPSHGQT
                     TAPEPTPAQKTPAKVVYVFSTEMANKAAEAVLKGQVETIVSFHIQNISNSKTERSTAP
                     LNTQISALRNDPKPLPQQPPAPANQDQTSSQNTRLQPTPPIPAPAPKPAAPPRPLDRD
                     SPGVENKLIPSVGSPASSTPLPPDGTGPNSTPNNRAVTPVSQGSSSSSADPKGPPPPP
                     LSSGEPPPLGENPDGLSQEQLEHRERSLQTLRDIQRMLFPDEKEFPGGQSGGPQQSTG
                     VLDGPQKKPEGPIQAMMAQSQSLGKGPGPRTDVGAPFGPQGHRDVPFSPDEMVPPSMN
                     SQSGPIGPDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQVVVQQCSLQDMMVHQHGPRG
                     VVRGPPPPYQMTPGEAWGPGGAEPFADGINMPHSLPPRAMAPHPNMPGSQMRLPGFAG
                     MMNSEMEGPSVPNPASRPGLSGVSWPDDVPKIPDGRNFPPGQGVFSGPGRGERFPNPQ
                     GLSEEMFQQQLAEKQLGLPPGMSVEGIRPGMEMNRLIPGSQRHMEPGNNPIFPRIPVE
                     GPLSPSRGDFPKGMPPQMGPGRELEFGMVPSGMKGDVSLNVNMGSNSQMIPQKMREAG
                     VGPEEMMKLRAGGADMLPAQQKMVPLPFGEHPQQEYGMGPRPFLPMSQGPGSNSGLRN
                     LREPVGPDQRTNSRLSHMPPLPLNPSSNPTSLNTAPSVQRGLGRKPVDLSVAGSQVHS
                     PGINPLKSPTMRQVQSPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPVLGSAA
                     ASPVHLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGGPPPP
                     TASQSASVSIPGSLPSSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIKT
                     VASSDDDSPPARSPNLPSMNNMPGLGINTQNPRISGPNPVVPMPTLSPMGMTQPLSHS
                     NQMPSPNAMGPTIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQSP
                     PQQVPFPHNGPSGGQGNFPGGMGFPGEGPLGRPSNLPQSSADAALCKPGGPGGPDSFA
                     VLGNSMPSVFTDPDLQEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGRKQP
                     QGPGPGFSHMQGMMGEQAPRMGLALPGMGGPGPVGTPDIPLGTAPSMPGHNPMRPPAF
                     LQQGMMGPHHRMMSPAQSTMPGQPTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSPG
                     MMMSMQGMMGPQQNIMIPPQMRPRSMAADVGMAGFSQGPGNPGNMMF"
     misc_feature    1723..1833
                     /gene="BCL9"
                     /note="B-cell lymphoma 9 protein; Region: BCL9; pfam11502"
                     /db_xref="CDD:431912"
     misc_feature    <2386..4158
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <3427..4905
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 caatggagcc tatgtgtgct tgcgggagtg ggacggcgcc gccgccgccg ctgccgccgc
       61 cggggggaga cgctgcgccg ccgctgccgc tggcccgggc cccggccccc cggggctgag
      121 agccgccccg gaccgaagcc ccctcccata ctctgttcct cttctcccct cccccactcc
      181 tgcctcgggg gactgaatgt gggactagct ggtgttactc cactttgacc taaaaattcc
      241 tttctgtttg ggaggcagag atcactcttg gaaagttcct ctgtgtccca atgttagaag
      301 agagagcaaa ttggacatct tgaaaggtga gggtcacctt tgagacaggg gttcctggac
      361 tccgcaagct cctcccctcc aggatgagca ctgctgtatc gtgacccttg gggttttgtg
      421 tgccctggag atgcgagatt ttcctttggc agcaggaggc acacacccag agaatgctgg
      481 agccgcaagg ggacaggacc cacttccaca gcggagaaaa acaaagagga aaaaggcgtg
      541 caggtggcca gcgctaaggg actcacccaa caagcagtgg gccactgccg ctgtcctcag
      601 cagctgtttc tgctgcagcc cgagaggaac tcggtgagcc cgtccctgtt tgtggctgca
      661 agctcaggat ttcaatcaat gcattccagt aaccctaaag tgaggaactc tccgtcagga
      721 aacacacaga gccctaagtc aaagcaggag gtgatggtcc gtccccctac agtgatgtcc
      781 ccatctggaa acccccagct ggattccaaa ttctccaatc agggtaaaca ggggggctca
      841 gccagccaat cccagccatc cccctgtgac tccaagagtg ggggccatac ccctaaagca
      901 ctccctggcc caggtgggag catggggctg aagaatgggg ctggaaatgg tgccaagggc
      961 aaggggaaaa gggagcgaag tatttccgcc gactcctttg atcagagaga tcctgggact
     1021 ccaaacgatg actctgacat gaaagaatgt aattctgctg accacataaa gtcccaggat
     1081 tcccagcaca cgccacactc aatgaccccg tcaaatgcta cagtccccag gtcttccacc
     1141 ccctcccatg gccagactac tgccccagag cccacacctg ctcagaagac tcccgccaaa
     1201 gtggtgtatg tgttttctac tgagatggcc aataaagctg cagaagctgt attgaagggc
     1261 caggttgaaa ctattgtctc tttccacatc cagaacatct ctaacagcaa gacagagaga
     1321 agcacagccc ctctgaacac acagatatct gcccttcgga atgatccgaa acctctccca
     1381 caacagcccc ccgctccagc caaccaggac cagacttcct cccagaacac cagactgcag
     1441 ccaactccac ccattccggc accagcaccc aagcctgccg cccccccgcg tcccctggac
     1501 cgggatagtc ccggggtaga aaacaaactg attccttctg taggcagccc tgccagctcc
     1561 actccactgc cgccagacgg taccgggcca aactcgacgc ccaacaaccg agcagtgact
     1621 cccgtttccc aggggagcag tagctcttca gcagatccca aaggcccccc acctccaccg
     1681 ttgtccagtg gagagccccc cccgctggga gagaaccccg acggactgtc tcaggagcag
     1741 ctggagcacc gggagcgctc cttacagacg ctcagagata tccagcgcat gcttttccct
     1801 gatgagaaag aattcccggg aggacagagt gggggacccc agcagagtac tggggtgtta
     1861 gatggacctc agaaaaaacc agaagggcca atacaggcca tgatggctca atcccaaagc
     1921 ctaggtaagg gacctgggcc ccggacagac gtgggggctc catttggccc tcagggacac
     1981 agagatgtgc ccttctctcc ggatgaaatg gttccacctt ccatgaactc ccagtctggg
     2041 cccattggac ccgaccacct ggatcacatg acccctgagc agatagcgtg gctgaagctg
     2101 cagcaggagt tctatgagga gaagaggaga aagcaggagc aagtggtcgt gcagcagtgc
     2161 tccctccagg atatgatggt ccatcagcac gggccgcggg gagtggtccg agggcctccc
     2221 cctccgtacc agatgacccc cggtgaggcc tgggggcctg ggggtgcaga gccctttgct
     2281 gacgggatca acatgcccca ttctctgccc ccgagggcca tggctcccca ccccaacatg
     2341 ccaggtagcc agatgcgcct ccctggattt gcaggaatga tgaactctga aatggagggg
     2401 cctagtgtcc ccaacccagc atctagacca ggtctctctg gagtcagctg gccagacgat
     2461 gtgccaaaaa tcccagacgg tcgaaacttc ccgcctggcc agggcgtctt cagtggtcct
     2521 ggccgagggg aacgtttccc aaacccccaa ggattgtctg aagagatgtt tcaacagcag
     2581 ctggcagaga aacagctggg tctgcccccg gggatgagcg tggaaggcat caggcccggc
     2641 atggagatga acaggctgat ccctggctcc cagcgacaca tggagccggg gaataatccc
     2701 atcttccctc gcataccagt agagggcccg ctgagccctt ctaggggtga ctttccaaaa
     2761 ggaatgcccc cacagatggg ccccggtcgg gaacttgagt ttgggatggt tcccagtggg
     2821 atgaagggag atgtcagtct aaatgtcaac atgggatcca actctcagat gatacctcag
     2881 aagatgagag aggctggggt ggggcccgag gagatgatga aactccgcgc cggcggtgca
     2941 gacatgctac ctgctcagca gaagatggtg cccctgccct ttggcgagca ccctcagcaa
     3001 gagtatggca tgggccccag gccgttcctc cccatgtctc agggtccagg cagcaacagt
     3061 ggcttgcgga atctcagaga accagttggg cccgaccaaa ggactaacag ccggctcagt
     3121 catatgccac cactacctct caacccttct agtaacccca ctagcctcaa cactgctcct
     3181 tccgttcagc gcggcctggg gcggaagccc gtggatctct ctgtggcagg cagccaggtg
     3241 cattccccag gcattaaccc tctgaaatct cccacgatgc gccaagtcca gtcgccaatg
     3301 ctgggctcgc cctcggggaa cctcaagtcc ccccagactc catcgcagct ggcaggcatg
     3361 ctggcgggcc cagctgctgc tgcttccatt aagtcccccc ctgtcttggg gtctgctgct
     3421 gcttcgcctg ttcacctcaa gtctccatca cttcccgccc catcaccggg atggacctcc
     3481 tctccaaagc ctccccttca gagccccggg atccctccaa accataaagc acccctcacc
     3541 atggcctccc cagccatgct gggaagtgta gagtcaggtg gccccccacc tcctacagcc
     3601 agccagtctg cctctgtgag tatcccggga agtcttccct ctagtacacc ttacaccatg
     3661 cctccagagc cgaccctttc ccagaaccca ctgtctatta tgatgtctcg aatgtccaag
     3721 tttgcaatgc ccagttctac cccgttatac cacgatgcca tcaagactgt ggccagctca
     3781 gatgacgact cccctccagc tcgttctccc aacttgccat caatgaataa tatgccagga
     3841 ctgggcatta atacacagaa tcctcgaatt tcaggtccaa accccgtggt tccaatgcca
     3901 accctcagcc caatgggaat gacccagcca ctttctcact ccaatcagat gccctctccg
     3961 aatgccatgg gacccaccat acctcctcat ggggtcccga tggggcctgg cttgatgtca
     4021 cacaatccta tcatggggca tgggtcccag gagcctccga tggtacctca aggacggatg
     4081 ggtttccccc agggcttccc tccagttcag tctcctccac agcaggttcc atttcctcac
     4141 aatggcccca gtggggggca gggcaacttc ccaggaggga tgggtttccc aggagaaggg
     4201 ccccttggcc gccccagcaa cctgccccaa agttcagcag atgcagcact ttgcaagcct
     4261 ggaggcccag ggggtcctga ctcctttgct gtcctgggga acagcatgcc ttcagtgttt
     4321 acagacccag atctacagga ggtcatccga cctggagcca ccggaatacc tgagtttgat
     4381 ctgtctcgta ttattccatc tgagaagcct agccagacac tgcaatattt ccctcgaggg
     4441 gaagtcccag gccgtaaaca gccccagggt cctggacctg ggttttcgca catgcagggg
     4501 atgatgggcg aacaagcccc cagaatggga ctagcattac ctggcatggg aggtccaggg
     4561 ccagtgggaa ctccggacat ccctcttggt acagctccat ccatgccagg ccacaaccca
     4621 atgagaccac cagcctttct ccagcaaggc atgatgggac ctcaccatcg gatgatgtca
     4681 ccagcacaat ctacaatgcc cggccagccc accctgatga gcaatccagc tgctgccgtg
     4741 ggcatgattc ctggcaagga tcgagggcct gccgggctct acacccaccc tgggcctgtg
     4801 ggatctccag gcatgatgat gtccatgcag ggcatgatgg gaccccaaca gaacatcatg
     4861 atccccccac agatgaggcc ccggagcatg gccgctgacg tgggcatggc tggatttagc
     4921 caaggacctg gcaacccagg aaacatgatg ttttaagctg ctaagattgg atgtgccgat
     4981 ccttgtcaag atgagattcc aggtcctgag agctgctttg agggagttcc aggagtactg
     5041 ttggtcatgc aataggagaa cagagaccca agggctgctt tgggggaggg gggaactcga
     5101 gaatgtatgg atttatctga aaacaaatta ttcatttaat caacaggtgt gtttttttta
     5161 agatttattt tttaaaaatt atttttgtgg acttgggtat cccatgatgg cacctacttt
     5221 tgggaatctg tagccgtgct ttgagaattg ccatgggtca tgtgttgcac cattctctgt
     5281 atgtttacgt cctttggact ggcttctccc aggattcttt tctggttttg tttttgcttt
     5341 gggctttatt ttttttgtgt gtactgtact atattgtaaa agggatttta gcagagactt
     5401 tagtctttgg gacaagagaa caggaatgct gggctgttta ctttaggtgg agaatccatc
     5461 ttcagacctt tggactattt tctttcaact ccagtgtata gaaaaaccaa actacgacct
     5521 cagagcagag tattaatgaa aagcacaaaa agaggaacta agttcagcga ggggtggggg
     5581 gaggggggag atttttcttt ttaaaaataa tgatgcttag gacatttgtt tttcagttca
     5641 agtgctcttc agcactgtct gtctctccca atctgaagac ccaccttcac atttttctct
     5701 tgttttccct cctctctcct tccctatctt cttggttaag tgagtttcct cctgttgtgt
     5761 cccccactgg tgaccccctg cttccctcct ctctttttcc ctttggcagc tgcaatacac
     5821 ggtgttattt tggggaaata aatctaacga agcctcgcct tccatgccga gcgttgtccc
     5881 ggctctggga gggaaaggtc tgtctttggg atgctcaatg gtcttctttg cccttcgtct
     5941 tttcttcccc aacctaccct tccctgccca ccttgttttc tgttctcctt ttattaggaa
     6001 ttcccaagtg aattttatta atgtgggagt ggaacagatg ctaaaagcta tccaagattt
     6061 tgtttttgtt tttaattttt tgtttccttc cctttcctcc ccgtcccatg cgtcaaacgt
     6121 tctgtgtaac ctccattaaa tttggtacaa aaccactcac cagagctgtg gtgtcagaaa
     6181 aataaaatat attgtttctt
//
LOCUS       XM_032649500            5981 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL9 transcription coactivator (BCL9),
            transcript variant X7, mRNA.
ACCESSION   XM_032649500
VERSION     XM_032649500.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5981
                     /gene="BCL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762476"
     CDS             679..4737
                     /gene="BCL9"
                     /codon_start=1
                     /product="B-cell CLL/lymphoma 9 protein isoform X3"
                     /protein_id="XP_032505391.1"
                     /db_xref="GeneID:116762476"
                     /translation="MHSSNPKVRNSPSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDS
                     KFSNQECNSADHIKSQDSQHTPHSMTPSNATVPRSSTPSHGQTTAPEPTPAQKTPAKV
                     VYVFSTEMANKAAEAVLKGQVETIVSFHIQNISNSKTERSTAPLNTQISALRNDPKPL
                     PQQPPAPANQDQTSSQNTRLQPTPPIPAPAPKPAAPPRPLDRDSPGVENKLIPSVGSP
                     ASSTPLPPDGTGPNSTPNNRAVTPVSQGSSSSSADPKGPPPPPLSSGEPPPLGENPDG
                     LSQEQLEHRERSLQTLRDIQRMLFPDEKEFPGGQSGGPQQSTGVLDGPQKKPEGPIQA
                     MMAQSQSLGKGPGPRTDVGAPFGPQGHRDVPFSPDEMVPPSMNSQSGPIGPDHLDHMT
                     PEQIAWLKLQQEFYEEKRRKQEQVVVQQCSLQDMMVHQHGPRGVVRGPPPPYQMTPGE
                     AWGPGGAEPFADGINMPHSLPPRAMAPHPNMPGSQMRLPGFAGMMNSEMEGPSVPNPA
                     SRPGLSGVSWPDDVPKIPDGRNFPPGQGVFSGPGRGERFPNPQGLSEEMFQQQLAEKQ
                     LGLPPGMSVEGIRPGMEMNRLIPGSQRHMEPGNNPIFPRIPVEGPLSPSRGDFPKGMP
                     PQMGPGRELEFGMVPSGMKGDVSLNVNMGSNSQMIPQKMREAGVGPEEMMKLRAGGAD
                     MLPAQQKMVPLPFGEHPQQEYGMGPRPFLPMSQGPGSNSGLRNLREPVGPDQRTNSRL
                     SHMPPLPLNPSSNPTSLNTAPSVQRGLGRKPVDLSVAGSQVHSPGINPLKSPTMRQVQ
                     SPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPVLGSAAASPVHLKSPSLPAPS
                     PGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGGPPPPTASQSASVSIPGSLP
                     SSTPYTMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIKTVASSDDDSPPARSPN
                     LPSMNNMPGLGINTQNPRISGPNPVVPMPTLSPMGMTQPLSHSNQMPSPNAMGPTIPP
                     HGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQSPPQQVPFPHNGPSGGQ
                     GNFPGGMGFPGEGPLGRPSNLPQSSADAALCKPGGPGGPDSFAVLGNSMPSVFTDPDL
                     QEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGRKQPQGPGPGFSHMQGMMG
                     EQAPRMGLALPGMGGPGPVGTPDIPLGTAPSMPGHNPMRPPAFLQQGMMGPHHRMMSP
                     AQSTMPGQPTLMSNPAAAVGMIPGKDRGPAGLYTHPGPVGSPGMMMSMQGMMGPQQNI
                     MIPPQMRPRSMAADVGMAGFSQGPGNPGNMMF"
     misc_feature    1504..1614
                     /gene="BCL9"
                     /note="B-cell lymphoma 9 protein; Region: BCL9; pfam11502"
                     /db_xref="CDD:431912"
     misc_feature    <2167..3939
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <3208..4686
                     /gene="BCL9"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 caatggagcc tatgtgtgct tgcgggagtg ggacggcgcc gccgccgccg ctgccgccgc
       61 cggggggaga cgctgcgccg ccgctgccgc tggcccgggc cccggccccc cggggctgag
      121 agccgccccg gaccgaagcc ccctcccata ctctgttcct cttctcccct cccccactcc
      181 tgcctcgggg gactgaatgt gggactagct ggtgttactc cactttgacc taaaaattcc
      241 tttctgtttg ggaggcagag atcactcttg gaaagttcct ctgtgtccca atgttagaag
      301 agagagcaaa ttggacatct tgaaaggtga gggtcacctt tgagacaggg gttcctggac
      361 tccgcaagct cctcccctcc aggatgagca ctgctgtatc gtgacccttg gggttttgtg
      421 tgccctggag atgcgagatt ttcctttggc agcaggaggc acacacccag agaatgctgg
      481 agccgcaagg ggacaggacc cacttccaca gcggagaaaa acaaagagga aaaaggcgtg
      541 caggtggcca gcgctaaggg actcacccaa caagcagtgg gccactgccg ctgtcctcag
      601 cagctgtttc tgctgcagcc cgagaggaac tcggtgagcc cgtccctgtt tgtggctgca
      661 agctcaggat ttcaatcaat gcattccagt aaccctaaag tgaggaactc tccgtcagga
      721 aacacacaga gtagccctaa gtcaaagcag gaggtgatgg tccgtccccc tacagtgatg
      781 tccccatctg gaaaccccca gctggattcc aaattctcca atcaggaatg taattctgct
      841 gaccacataa agtcccagga ttcccagcac acgccacact caatgacccc gtcaaatgct
      901 acagtcccca ggtcttccac cccctcccat ggccagacta ctgccccaga gcccacacct
      961 gctcagaaga ctcccgccaa agtggtgtat gtgttttcta ctgagatggc caataaagct
     1021 gcagaagctg tattgaaggg ccaggttgaa actattgtct ctttccacat ccagaacatc
     1081 tctaacagca agacagagag aagcacagcc cctctgaaca cacagatatc tgcccttcgg
     1141 aatgatccga aacctctccc acaacagccc cccgctccag ccaaccagga ccagacttcc
     1201 tcccagaaca ccagactgca gccaactcca cccattccgg caccagcacc caagcctgcc
     1261 gcccccccgc gtcccctgga ccgggatagt cccggggtag aaaacaaact gattccttct
     1321 gtaggcagcc ctgccagctc cactccactg ccgccagacg gtaccgggcc aaactcgacg
     1381 cccaacaacc gagcagtgac tcccgtttcc caggggagca gtagctcttc agcagatccc
     1441 aaaggccccc cacctccacc gttgtccagt ggagagcccc ccccgctggg agagaacccc
     1501 gacggactgt ctcaggagca gctggagcac cgggagcgct ccttacagac gctcagagat
     1561 atccagcgca tgcttttccc tgatgagaaa gaattcccgg gaggacagag tgggggaccc
     1621 cagcagagta ctggggtgtt agatggacct cagaaaaaac cagaagggcc aatacaggcc
     1681 atgatggctc aatcccaaag cctaggtaag ggacctgggc cccggacaga cgtgggggct
     1741 ccatttggcc ctcagggaca cagagatgtg cccttctctc cggatgaaat ggttccacct
     1801 tccatgaact cccagtctgg gcccattgga cccgaccacc tggatcacat gacccctgag
     1861 cagatagcgt ggctgaagct gcagcaggag ttctatgagg agaagaggag aaagcaggag
     1921 caagtggtcg tgcagcagtg ctccctccag gatatgatgg tccatcagca cgggccgcgg
     1981 ggagtggtcc gagggcctcc ccctccgtac cagatgaccc ccggtgaggc ctgggggcct
     2041 gggggtgcag agccctttgc tgacgggatc aacatgcccc attctctgcc cccgagggcc
     2101 atggctcccc accccaacat gccaggtagc cagatgcgcc tccctggatt tgcaggaatg
     2161 atgaactctg aaatggaggg gcctagtgtc cccaacccag catctagacc aggtctctct
     2221 ggagtcagct ggccagacga tgtgccaaaa atcccagacg gtcgaaactt cccgcctggc
     2281 cagggcgtct tcagtggtcc tggccgaggg gaacgtttcc caaaccccca aggattgtct
     2341 gaagagatgt ttcaacagca gctggcagag aaacagctgg gtctgccccc ggggatgagc
     2401 gtggaaggca tcaggcccgg catggagatg aacaggctga tccctggctc ccagcgacac
     2461 atggagccgg ggaataatcc catcttccct cgcataccag tagagggccc gctgagccct
     2521 tctaggggtg actttccaaa aggaatgccc ccacagatgg gccccggtcg ggaacttgag
     2581 tttgggatgg ttcccagtgg gatgaaggga gatgtcagtc taaatgtcaa catgggatcc
     2641 aactctcaga tgatacctca gaagatgaga gaggctgggg tggggcccga ggagatgatg
     2701 aaactccgcg ccggcggtgc agacatgcta cctgctcagc agaagatggt gcccctgccc
     2761 tttggcgagc accctcagca agagtatggc atgggcccca ggccgttcct ccccatgtct
     2821 cagggtccag gcagcaacag tggcttgcgg aatctcagag aaccagttgg gcccgaccaa
     2881 aggactaaca gccggctcag tcatatgcca ccactacctc tcaacccttc tagtaacccc
     2941 actagcctca acactgctcc ttccgttcag cgcggcctgg ggcggaagcc cgtggatctc
     3001 tctgtggcag gcagccaggt gcattcccca ggcattaacc ctctgaaatc tcccacgatg
     3061 cgccaagtcc agtcgccaat gctgggctcg ccctcgggga acctcaagtc cccccagact
     3121 ccatcgcagc tggcaggcat gctggcgggc ccagctgctg ctgcttccat taagtccccc
     3181 cctgtcttgg ggtctgctgc tgcttcgcct gttcacctca agtctccatc acttcccgcc
     3241 ccatcaccgg gatggacctc ctctccaaag cctccccttc agagccccgg gatccctcca
     3301 aaccataaag cacccctcac catggcctcc ccagccatgc tgggaagtgt agagtcaggt
     3361 ggccccccac ctcctacagc cagccagtct gcctctgtga gtatcccggg aagtcttccc
     3421 tctagtacac cttacaccat gcctccagag ccgacccttt cccagaaccc actgtctatt
     3481 atgatgtctc gaatgtccaa gtttgcaatg cccagttcta ccccgttata ccacgatgcc
     3541 atcaagactg tggccagctc agatgacgac tcccctccag ctcgttctcc caacttgcca
     3601 tcaatgaata atatgccagg actgggcatt aatacacaga atcctcgaat ttcaggtcca
     3661 aaccccgtgg ttccaatgcc aaccctcagc ccaatgggaa tgacccagcc actttctcac
     3721 tccaatcaga tgccctctcc gaatgccatg ggacccacca tacctcctca tggggtcccg
     3781 atggggcctg gcttgatgtc acacaatcct atcatggggc atgggtccca ggagcctccg
     3841 atggtacctc aaggacggat gggtttcccc cagggcttcc ctccagttca gtctcctcca
     3901 cagcaggttc catttcctca caatggcccc agtggggggc agggcaactt cccaggaggg
     3961 atgggtttcc caggagaagg gccccttggc cgccccagca acctgcccca aagttcagca
     4021 gatgcagcac tttgcaagcc tggaggccca gggggtcctg actcctttgc tgtcctgggg
     4081 aacagcatgc cttcagtgtt tacagaccca gatctacagg aggtcatccg acctggagcc
     4141 accggaatac ctgagtttga tctgtctcgt attattccat ctgagaagcc tagccagaca
     4201 ctgcaatatt tccctcgagg ggaagtccca ggccgtaaac agccccaggg tcctggacct
     4261 gggttttcgc acatgcaggg gatgatgggc gaacaagccc ccagaatggg actagcatta
     4321 cctggcatgg gaggtccagg gccagtggga actccggaca tccctcttgg tacagctcca
     4381 tccatgccag gccacaaccc aatgagacca ccagcctttc tccagcaagg catgatggga
     4441 cctcaccatc ggatgatgtc accagcacaa tctacaatgc ccggccagcc caccctgatg
     4501 agcaatccag ctgctgccgt gggcatgatt cctggcaagg atcgagggcc tgccgggctc
     4561 tacacccacc ctgggcctgt gggatctcca ggcatgatga tgtccatgca gggcatgatg
     4621 ggaccccaac agaacatcat gatcccccca cagatgaggc cccggagcat ggccgctgac
     4681 gtgggcatgg ctggatttag ccaaggacct ggcaacccag gaaacatgat gttttaagct
     4741 gctaagattg gatgtgccga tccttgtcaa gatgagattc caggtcctga gagctgcttt
     4801 gagggagttc caggagtact gttggtcatg caataggaga acagagaccc aagggctgct
     4861 ttgggggagg ggggaactcg agaatgtatg gatttatctg aaaacaaatt attcatttaa
     4921 tcaacaggtg tgtttttttt aagatttatt ttttaaaaat tatttttgtg gacttgggta
     4981 tcccatgatg gcacctactt ttgggaatct gtagccgtgc tttgagaatt gccatgggtc
     5041 atgtgttgca ccattctctg tatgtttacg tcctttggac tggcttctcc caggattctt
     5101 ttctggtttt gtttttgctt tgggctttat tttttttgtg tgtactgtac tatattgtaa
     5161 aagggatttt agcagagact ttagtctttg ggacaagaga acaggaatgc tgggctgttt
     5221 actttaggtg gagaatccat cttcagacct ttggactatt ttctttcaac tccagtgtat
     5281 agaaaaacca aactacgacc tcagagcaga gtattaatga aaagcacaaa aagaggaact
     5341 aagttcagcg aggggtgggg ggagggggga gatttttctt tttaaaaata atgatgctta
     5401 ggacatttgt ttttcagttc aagtgctctt cagcactgtc tgtctctccc aatctgaaga
     5461 cccaccttca catttttctc ttgttttccc tcctctctcc ttccctatct tcttggttaa
     5521 gtgagtttcc tcctgttgtg tcccccactg gtgaccccct gcttccctcc tctctttttc
     5581 cctttggcag ctgcaataca cggtgttatt ttggggaaat aaatctaacg aagcctcgcc
     5641 ttccatgccg agcgttgtcc cggctctggg agggaaaggt ctgtctttgg gatgctcaat
     5701 ggtcttcttt gcccttcgtc ttttcttccc caacctaccc ttccctgccc accttgtttt
     5761 ctgttctcct tttattagga attcccaagt gaattttatt aatgtgggag tggaacagat
     5821 gctaaaagct atccaagatt ttgtttttgt ttttaatttt ttgtttcctt ccctttcctc
     5881 cccgtcccat gcgtcaaacg ttctgtgtaa cctccattaa atttggtaca aaaccactca
     5941 ccagagctgt ggtgtcagaa aaataaaata tattgtttct t
//
LOCUS       XM_032649514            1112 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tRNA selenocysteine 1 associated protein
            1 (TRNAU1AP), transcript variant X1, mRNA.
ACCESSION   XM_032649514
VERSION     XM_032649514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1112
                     /gene="TRNAU1AP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762497"
     CDS             102..965
                     /gene="TRNAU1AP"
                     /codon_start=1
                     /product="tRNA selenocysteine 1-associated protein 1
                     isoform X1"
                     /protein_id="XP_032505405.1"
                     /db_xref="GeneID:116762497"
                     /translation="MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIP
                     AGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGD
                     LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA
                     VGLGSKPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSY
                     SYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPL
                     DTVSSEIPAVM"
     misc_feature    111..362
                     /gene="TRNAU1AP"
                     /note="RNA recognition motif 1 (RRM1) found in tRNA
                     selenocysteine-associated protein 1 (SECp43); Region:
                     RRM1_SECp43; cd12610"
                     /db_xref="CDD:410022"
     misc_feature    384..629
                     /gene="TRNAU1AP"
                     /note="RNA recognition motif 2 (RRM2) found in tRNA
                     selenocysteine-associated protein 1 (SECp43); Region:
                     RRM2_SECp43; cd12612"
                     /db_xref="CDD:410024"
     misc_feature    <717..953
                     /gene="TRNAU1AP"
                     /note="Selenocysteine tRNA 1 associated proteins; Region:
                     Trnau1ap; pfam17654"
                     /db_xref="CDD:465438"
ORIGIN      
        1 aggcgtcgga ggcgcatgct ctgtggaggt tccggctcgg cggcccggcg tccgcgccag
       61 cctcggtggc cagcgaagtc cttggtgggg gggcctcggg catggcggcc agcctgtgga
      121 tgggcgacct ggaaccctac atggatgaga acttcatctc cagagccttt gccaccatgg
      181 gggagaccgt gatgagcgtc aaaattatcc gaaaccgcct cactgggatc ccagctggct
      241 actgctttgt agaattcgca gatttggcca cagctgagaa gtgtttgcat aaaatcaacg
      301 ggaaacccct tccaggagcc acacctgcaa aacgttttaa actgaactat gccacttatg
      361 ggaaacagcc agataacagc cccgagtact ccctctttgt gggggacctg accccagatg
      421 tggatgatgg catgctgtat gaattcttcg tcaaagtcta cccctcctgt cggggaggca
      481 aggtggtttt ggaccagaca ggagtgtcta agggctatgg ttttgtgaaa ttcacagatg
      541 agctggaaca gaagcgagcc ctgacagagt gccagggagc agttggactg gggtctaaac
      601 cagtgcgtct gagtgtggcg atccctaaag cgagccgtgt gaagccagtg gaatatagtc
      661 aaatgtacag ttacagctac aaccagtatt accagcagta ccagaactac tatgcccagt
      721 ggggctatga ccagaacaca ggcagctaca gctacagtta tccccagtat ggctataccc
      781 agagcaccat gcagacatat gaagaagtcg gagatgatgc attggaagac cccatgccac
      841 agctggatgt gactgaggcc aacaaggagt tcatggagca gagcgaggag ctgtacgacg
      901 cactgatgga ctgccactgg cagcccctgg acacagtgtc ttcagagatc cccgccgtga
      961 tgtagccagg acagggcaca agccagagtg ggctttgtga gggagctaag agactccttt
     1021 tttaaaaaaa gattacttca agaactttta ccttttttga aatttgtaag attttagtaa
     1081 tcaactgttt cctgaaatta tgaatatttc ct
//
LOCUS       XM_032649521            6242 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tRNA selenocysteine 1 associated protein
            1 (TRNAU1AP), transcript variant X2, mRNA.
ACCESSION   XM_032649521
VERSION     XM_032649521.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6242
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6242
                     /gene="TRNAU1AP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762497"
     CDS             102..833
                     /gene="TRNAU1AP"
                     /codon_start=1
                     /product="tRNA selenocysteine 1-associated protein 1
                     isoform X2"
                     /protein_id="XP_032505412.1"
                     /db_xref="GeneID:116762497"
                     /translation="MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIP
                     AGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNRGYGFVKFTD
                     ELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYY
                     AQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSE
                     ELYDALMDCHWQPLDTVSSEIPAVM"
     misc_feature    111..362
                     /gene="TRNAU1AP"
                     /note="RNA recognition motif 1 (RRM1) found in tRNA
                     selenocysteine-associated protein 1 (SECp43); Region:
                     RRM1_SECp43; cd12610"
                     /db_xref="CDD:410022"
     misc_feature    <378..497
                     /gene="TRNAU1AP"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
     misc_feature    <585..821
                     /gene="TRNAU1AP"
                     /note="Selenocysteine tRNA 1 associated proteins; Region:
                     Trnau1ap; pfam17654"
                     /db_xref="CDD:465438"
ORIGIN      
        1 aggcgtcgga ggcgcatgct ctgtggaggt tccggctcgg cggcccggcg tccgcgccag
       61 cctcggtggc cagcgaagtc cttggtgggg gggcctcggg catggcggcc agcctgtgga
      121 tgggcgacct ggaaccctac atggatgaga acttcatctc cagagccttt gccaccatgg
      181 gggagaccgt gatgagcgtc aaaattatcc gaaaccgcct cactgggatc ccagctggct
      241 actgctttgt agaattcgca gatttggcca cagctgagaa gtgtttgcat aaaatcaacg
      301 ggaaacccct tccaggagcc acacctgcaa aacgttttaa actgaactat gccacttatg
      361 ggaaacagcc agataacagg ggctatggtt ttgtgaaatt cacagatgag ctggaacaga
      421 agcgagccct gacagagtgc cagggagcag ttggactggg gtctaaacca gtgcgtctga
      481 gtgtggcgat ccctaaagcg agccgtgtga agccagtgga atatagtcaa atgtacagtt
      541 acagctacaa ccagtattac cagcagtacc agaactacta tgcccagtgg ggctatgacc
      601 agaacacagg cagctacagc tacagttatc cccagtatgg ctatacccag agcaccatgc
      661 agacatatga agaagtcgga gatgatgcat tggaagaccc catgccacag ctggatgtga
      721 ctgaggccaa caaggagttc atggagcaga gcgaggagct gtacgacgca ctgatggact
      781 gccactggca gcccctggac acagtgtctt cagagatccc cgccgtgatg tagccaggac
      841 agggcacaag ccagagtggg ctttgtgagg gagctaagag actccttttt taaaaaaaga
      901 ttacttcaag aacttttacc ttttttgaaa tttgtaagat tttagtaatc aactgtttcc
      961 tgaaattatg aatatttcct gggatactgc tgccttcatt tgagccattt gagtttgaaa
     1021 atgaagggac cagttgttag aagagggatg aatgaggttc cagtttatct ttgaacaata
     1081 atcatttacc caggtggggt tgtctacact cctggagatt aaggattaac caccaaagtt
     1141 aagttactaa aaccaacttc ttaggtgaca ggcacattac tccttaaggt tctcttgagg
     1201 tcagagtgcg tggactccct gcaggaatgg tgccaaatgg tgggcaatta tcggctttca
     1261 ggtattccct tcccccaaca aacttgcttc cagtctggtg gctaggcaga gttcattatt
     1321 cagactgggg aggaagtggc ccattgagag acgtgttggg gccagcttaa tctagaccaa
     1381 aagtcctgga ttgttttagg taacgcctgt accatctgtg ccaagcccac ctgttagtag
     1441 atattaatcc atttatatat aggaaccggt aattcagaaa tataacctga ccatgaggtc
     1501 aaccatcacc aaaccgtatc ttgatgcaag ccttacacat ctctatttat tttccaaata
     1561 aattaggaga tcccatttaa cttaccacaa ggaccctcct gaaaagcctt acctatagct
     1621 tcgtgctagg aaactgggag ggcggggagc ggcggagtat actgccccag gacattaagt
     1681 accagtcctg ccctcagcct gaattctcac ttagcaagag taatacaatt gcaattatag
     1741 aactgatcgt tttgttcctt tctgagatca accttttctt cagaaattga gactataatt
     1801 cattctgagt cttacagagt atttaaatag ggaataacca acaatctgag ggacatcaag
     1861 aaaactgaca caaacataca tccaggaacc ttttattggt cacttgtatg ccaggtacca
     1921 gcatcagaaa gaaaaaaagg tgtttccccc tcaaagagcc ccttgtctct tcatttgcct
     1981 cttcctgtag tgtttctctc ctgaaaaaga agtgtacacc agtgtgttaa taatgcccca
     2041 attaatcaat gccacccagg ttttcctaag ggctggtctc agtcccatat ccgcatttat
     2101 catccaaaga tgtccactca gattaggttt catcctggac cagtcacagc ctgaaaaaat
     2161 accttgagct agaatagaac cactctccca ggagaggggt gggtaagact ccaagattac
     2221 caaaaccaat gagcatgagc tcaagccatt atcgcattca cagtagtcag cccttgctgt
     2281 aaagacacag gactgtccct tctgccacat tctactctgc aggtgtgttc ttggcattta
     2341 gcataggcaa atccagcaga ccaagtcaca ctgtaaacat ttattttttg tcctacggtt
     2401 atgaagagcc aacaaataca gcacacaagg ccagatgtaa atgatatatt aaaaagaaga
     2461 cttttacaca cagacctgag tagccttatt atctactggc tacactgctt agggtgataa
     2521 cagtgaaata ctaatggaag ctgcaaggaa gttgtgtgaa agcttctgga agacattcaa
     2581 ctcacccaac tctgtagatc cacaatcaca gaagaagaca gctttactgg taacagatct
     2641 taggagggaa aaaaaagaac actcgatcag gagtcaagaa agctatggat aaatccctcc
     2701 caaatacaga aatattagtc agcaatcact ataccagctg cccagtttca catacagcct
     2761 ccctttaagt ctaagattat cccattttac aggggaggag gccacaagtt ccaagagaat
     2821 tcaaccttgt ttgaaactag cccacatgct atataaacag acaccatgag cacagcttca
     2881 gtactactat tcctcctctt acgaccacca agaccaaggt tcagatctga tgggaaaggg
     2941 aaccggaggg tcaggctgtc ttcaacatcc aactttacct tattctaaag cattgctcca
     3001 gcaacaagct ggtcttttca gatacttcag tatcaggcac tgccagtaaa acctgggggc
     3061 aacctgcaga aaaaaagtgt ggaagctcta aaccaaaaag ttgatccata cacagaggct
     3121 gacttttttg atggaaacac atggactcaa gtggaaggct tccagcccag gtcctgaggt
     3181 actataggaa aggcgagtgg cagctgcagg tattatgctg acctgtgctg tcaaagtctc
     3241 tccacgttgc tcttgcatgc agttggagat cctatggcca caacaagcca tagcccttgg
     3301 gaacatgctg tactgaccca cgaagctccc aaattacgtc cctacagaaa acctaccagg
     3361 tcctgaggct gctgtgttcc atcactgtca tgaccccggt cttcactcac cagaaaggtc
     3421 aacttcagtc attctggaat cttcaatctg gcacagctaa aaggagaaca caactgtcct
     3481 gaatcttaat tgttcccttc atttggtctt cagaactacg tttttttttt ttgttttttt
     3541 tttttttgcg gtacgcgggc ctctccctgc tgtggcccct cccgctgcga agcacaggct
     3601 ccggacgcac aggctcagcg gccatggccc acgggcccaa ccgctccgcg gcatgtggga
     3661 tcctcccgca ccggggcacg aacccgtgtc ccctgcatcg gcaggcggac tctcaaccac
     3721 tgcgccacca gggaagccca gaactacgtt ttttgactag cctttggtcc taagtactga
     3781 tgccataagc ttttcagggc aatggcccaa agcacgacca agatctgcac cacctgccac
     3841 gggattttcc cagtacagat atctaaccca cccccatcta cccctccatg ctggttcttg
     3901 gcctctgcaa gctacttctc aaaagcctta ttctgttaac tctgtatgca tgaccccatc
     3961 agtggaacat ttctgctagc ctctggaaat gtgtcaactc taataaaggt ctctggctat
     4021 acatgagaaa tggcaggtac aatgggagct gtcttttcct gaaatgttgc agatcagtta
     4081 cagcaaacag aacagcgacc gtcaaggaaa actgtcactc tgggctcctt tttgaccaca
     4141 gcagctatgt ggaagcagct gcagcttcga caagggccac agggtaatcc aggtcacagg
     4201 gcaggcccaa cactgtgtag ccctcagact cacctaaatc tgtgcatcag gacttatcac
     4261 caattcatct actgggacac tctggaaact aaaaaaagag aacaaacatc ctataggtcc
     4321 caatcaccac tttgttttac tatgtgccag tgttttgtct cgtttatctt cactggacca
     4381 ttttatcatc cccatttttt ataagactta gactaagtta cttaccgaaa gttgtctatc
     4441 aatggaaaaa gtgacaaacc taggattcaa aatagtatct gaatgactaa agcccgtcct
     4501 ccggaaaacc ttgtccttat acccaccatg gtgacttcct taacatgtgc tgtgcagcca
     4561 gataatttag atgaaggcac ggaagtcacc tgcccaagat caccgagcag ctacctgtca
     4621 caggcatatt caaggtctgg ctgaccccat cacgtggtct ccccccaaat taagccactt
     4681 cagtcccaga actgccgtgc tcccggcggc ctgcccgcgt tactcaccca tgacaccgca
     4741 gcacaaggcc ctgcgggccg aggcgggagc agggcgcagc cctcacaggt tccggggcct
     4801 ttcactgcgc atgcggccaa tgtggccttc cggaccttga tccaaccagg tcggcaggcc
     4861 agggtcctcc gtgctgcgct caacatcccg caacctcggg aagcagctcc ggcgagtgtg
     4921 gcggcggtgg cgccgaggct aaggccgggt acggcggagg atgggcgtaa accttagcag
     4981 agaacgcgaa aggccaagag aacaaggacg cggtaaccgg aaaaaagggt agctgcgcgc
     5041 cgagaagagg tttatatagg tcccgccctt cgcggccgcg cctgacagtt ggagctgcgt
     5101 gccgcgcaga ctgctgggaa ttgtagttct ttcgccacca gcgcggaccg cgtgtctggc
     5161 tccagcccca agcgcgtgcg gggcgagacc cttttcaccc agatggagaa gccttgtggt
     5221 ttcttccgga ccggaagagg ttcctccgcc ttccttcagc attcagtgaa tatccaatac
     5281 cgggcactgg gatcacagat accggtgtgc catctggagt tcattccggg gaagactttc
     5341 aacatcgaga agtcaaccgt taaccctgtg agctgagaaa gggctgcgtt cagaccgccg
     5401 tgggcacgtg gaggagcagc gactgagtga tttcggggag gagctctgtg aggtcttctc
     5461 ggagagggat cttggggagg gcttccttcc caaaaggaag aggcgattga ttacagtact
     5521 catgagatga atgcattatt tattcaagcc tcatctcttc cgctgataga taaaaaattt
     5581 tattgagtgc ttgctaagta cactgtgctc cattatctca gctagttttc attaaccctg
     5641 tgtgtgggta ttataattat gcctttttca cacataagga aactgaggaa tggatcacac
     5701 agctagcaag tgaggtaagg actggaatgc ggaagtccac ctcaaacagc acactcataa
     5761 tcactgtgcc atgtgcacgt tttgtccata gaatgaataa gcgtcaatat aaaaacgtag
     5821 taattgtcaa gaattaagca cctattctgt gcttaatcta ttcatcagtt ttcatcctta
     5881 catacacttt aaaacgtttt tatccttact tacactttaa gaagtgttac tattattccc
     5941 attttgtgga gaaggcgaca gactgtatga gggttaagaa actttctgat gacttccaga
     6001 tgtgtttccg ctttccttct gagctccaga cttgatatcc tgctgcttcc gtgacatcta
     6061 cacttggatg gctatttgtt aataggcttc tcagaacaca gtctttcctc ctctagacct
     6121 gcttttcccc atctcagtaa gtccttaggg tgacccaaga cccctcttct tctaatatcc
     6181 cacttccaat gcatcagcaa atcctgtgtt cacctttaag atgcctcaag aatctatttc
     6241 tg
//
LOCUS       XM_032649530             294 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATP synthase subunit e, mitochondrial
            (LOC116762506), mRNA.
ACCESSION   XM_032649530
VERSION     XM_032649530.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..294
                     /gene="LOC116762506"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762506"
     CDS             26..241
                     /gene="LOC116762506"
                     /codon_start=1
                     /product="ATP synthase subunit e, mitochondrial"
                     /protein_id="XP_032505421.1"
                     /db_xref="GeneID:116762506"
                     /translation="MVPPVQVSPLIKLGRYCALFLGVVYGAKRYDYLKPRAEEERRIA
                     AEEKKKQDEQRRIERELAEAQEDSILK"
     misc_feature    29..>223
                     /gene="LOC116762506"
                     /note="ATP synthase E chain; Region: ATP-synt_E;
                     pfam05680"
                     /db_xref="CDD:368558"
ORIGIN      
        1 ttccggcgtg aaggtcacgg gcaagatggt tccgccagtg caggtctctc cgctcatcaa
       61 gctcggccgt tactgcgcct tgttcctcgg cgtggtttac ggagccaagc gctacgatta
      121 cctgaaaccc cgggcagagg aggagaggag gatagcagcc gaggagaaga agaagcagga
      181 tgagcagagg cgcattgaga gagaactggc agaagcccaa gaggacagca tattaaagtg
      241 agcccgcctt tccccggagc agtgtggatg aataaagcct cctgtactgt gtga
//
LOCUS       XM_032649544            3223 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus monocarboxylate transporter 1
            (LOC116762512), transcript variant X1, mRNA.
ACCESSION   XM_032649544
VERSION     XM_032649544.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3223
                     /gene="LOC116762512"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 10 long SRA reads, 34
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762512"
     CDS             209..1714
                     /gene="LOC116762512"
                     /codon_start=1
                     /product="monocarboxylate transporter 1 isoform X1"
                     /protein_id="XP_032505435.1"
                     /db_xref="GeneID:116762512"
                     /translation="MPPAVGGPVGYTPPDGGWGWAVVVGAFISIGFSYAFPKSITVFF
                     KEIEGIFNATTSEVSWISSIMLAVMYGGGPISSILVNKYGSRPIMIVGGCLSGCGLIA
                     ASFCNTVQELYLCVGVIGGLGLAFNLNPALTMIGKYFYKRRPLANGLAMAGSPVFLST
                     LAPLNQAFFGIYGWRGSFLILGGLLLNCCVAGALMRPIGPKPTTAGRYKSKESLQEAG
                     KSDAKKGASDANTDLIGGNPKKEKRSVFQTLNKFLDLSLFKHRGFLLYLSGNVLMFFG
                     LFTPLVFLSNYGKSQHYSSEKSAFLLSILAFVDMVARPSMGLVANTKWIRPRVQYFFA
                     ASIIANGVCHLAAPLSSSYIGFCVYAGFFGFAFGWLSSVLFETLMDLVGPQRFSSAVG
                     LVTIVECCPVLLGPPLLGRLNDIYGDYKYTYWACGIILIVAGIYLFIGMGINYRFLAK
                     EQKAEQQQKKESKEEETSIDVAEKPKEVTDAAESLEPKGIEGGPKEEESPV"
     misc_feature    209..1627
                     /gene="LOC116762512"
                     /note="monocarboxylate transporter 1; Region: 2A0113;
                     TIGR00892"
                     /db_xref="CDD:273325"
ORIGIN      
        1 gacaaagtgc tggcgagctg cgacgtgact actcggtcgc gtgggttccc gggcgagcag
       61 actaggcagc cggtgaaaga cgctacctgg accctgggcc ctgcgggact ccagccgcgc
      121 cgcggcgtca cgttcacgct cggcgccgtg agccgcgcat aacgatattt ggatttgaac
      181 tgcattttgg gatttatcta cacttaaaat gccaccggca gttggaggtc cagttggata
      241 caccccccca gatggaggct ggggatgggc agtggtagtt ggagctttca tttccatcgg
      301 cttctcctat gcgtttccca aatctattac tgtgttcttc aaagaaattg aaggtatatt
      361 caatgccacc accagtgaag tgtcatggat atcttccatc atgttggctg tcatgtatgg
      421 tggaggtcct atcagcagta tcctggtgaa taaatatggc agtcgtccaa tcatgattgt
      481 tggcggctgc ttgtcaggct gtggcttgat cgcagcttcc ttctgtaaca ctgtgcagga
      541 actttacttg tgtgtcggag tcattggagg tcttgggctt gccttcaact tgaatccagc
      601 tttaaccatg attggcaagt atttctacaa gaggcgaccg ttggcaaatg gactggccat
      661 ggcaggcagt cctgtgttcc tctctaccct ggcccccctt aatcaggctt tctttggtat
      721 ctatggctgg agaggaagct tcctaattct tgggggctta ctattaaact gctgtgtggc
      781 tggagctctg atgagaccaa tcgggcctaa gccaaccact gcagggagat ataagtctaa
      841 agaatccctt caggaagctg gaaaatccga cgcaaaaaag ggggcaagtg atgcaaatac
      901 agatctcatt ggaggaaatc cgaaaaaaga gaaaagatca gtcttccaaa cacttaataa
      961 attcctggac ttatccctgt tcaagcacag aggctttttg ctctacctgt ctggaaatgt
     1021 gctcatgttt tttggactat ttacaccttt ggtctttctt agtaattatg gcaagagtca
     1081 gcattactct agtgagaagt ctgccttcct tctttccatt ctggcttttg ttgacatggt
     1141 agccagacct tctatgggac ttgtagccaa cacaaagtgg ataagacctc gagttcagta
     1201 tttttttgct gcttctatta ttgcaaatgg agtttgtcat ctggcagcac ctttgtcctc
     1261 tagctatata ggattctgtg tctatgcggg attcttcgga tttgcatttg ggtggctcag
     1321 ttcagtattg tttgaaacgc tgatggacct tgttggaccc cagaggttct ccagtgctgt
     1381 gggattggtg accattgtgg aatgctgtcc tgtcctgctg gggccaccac ttttaggtcg
     1441 tctcaatgac atatatggag actacaaata cacatactgg gcatgtggta taatccttat
     1501 tgtcgcaggc atctatcttt tcatcggcat gggcatcaat taccgatttc ttgcaaaaga
     1561 acagaaagct gagcagcagc agaaaaagga aagtaaagag gaggagacca gtatagatgt
     1621 tgctgagaag ccaaaagaag ttaccgatgc agcagaatct ctggagccta aaggcataga
     1681 aggaggcccc aaggaggagg agagtccagt ttgaacctgt ggggctgatg ggtaaatgga
     1741 gcagctcatg accccaaatg ttctattggc ctgtgatcta ccagtggtgc tcaatgcaaa
     1801 tactggacat ttctgtggga atcataccag gggttcattg atggaatttt tgtttcactc
     1861 cttaccagta gcctgggcta aaaatgtcat agcctttggg aaggaagtgg ttggaaaaga
     1921 atgagagaag gaagtcggtt tgtgtttttg tttgattaaa tctttgcttt taacagtgtc
     1981 atgataatgt gctatgataa tgtgataata atatgtgcct taagttttag tctttaggga
     2041 gccttaactt ttaaaaccat tctgcttaat tcatccattt taagtgttct gttacaagga
     2101 aaaataacta gtttgaggca aatctaaaat ttaaaattaa tcttgcttca ttgttatttg
     2161 taataatagt gtcagacatt gtcactagaa gatttgaaag ttggggtttt tataaaatcc
     2221 tgactaaaat attttcctag catcaatagt tgcttggcat atgtgcctgc tagatatata
     2281 tttaggaaat ttaaggcata agactttgca aacatcttgg ctgttctaga tgcagtgtgc
     2341 tcatcagtac acctcctcca gtatcttttc ttggtttgct tattagaagc cacgtgcttg
     2401 agagttgact tcattaaatt actatttttg ctcccttttc caaagataaa ttttgagtgg
     2461 tcatagatca ccgccccttt tgagatcaca tagtattccc cccccactgg aaaaattagt
     2521 attaaaatac acaaaactgt gtatttgtgc ctcctcagta aattaaacat agacaggcat
     2581 ttcaaacagc agctgaattc agcttaggtt tttccaaaac ttcagttaaa ctgtgagact
     2641 tggaatcttt tgttgttgtt tttcctggaa ttttccccct ttgattcata gtggttccat
     2701 ttatatccac atctagctta gcactgtgtg tgagatagtc tttgtgtgtt cagttttttg
     2761 ggttttttaa aaaaatattt gctaattaaa gagacccata gagatttggc ccacacaaac
     2821 caataaggat aagattggga gagaagttgc tatgtgtgct ttaataagta acttgttttc
     2881 tttttcttat aaggccttaa agaaaattaa tgttttgctt agaattatta gacaaattct
     2941 tactctttac ataaacctaa agattttgtg acccttttca cttatctgaa aagtagagaa
     3001 atgggtttag tgtaaggata ggaaggagga tggaccagaa tgaaaactgt aaatattttt
     3061 tcacctaata tcttttaaat ggtggcagga ggataatgat agacagtcaa taaattatat
     3121 tcagtgcatt ttaaaatatc attgtaattg acagtgtgaa agtatagata taaaaccttc
     3181 agaggctgac tttttaaaat aaactttttt tttttttaag aaa
//
LOCUS       XM_032649556            4770 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus monocarboxylate transporter 1
            (LOC116762512), transcript variant X2, mRNA.
ACCESSION   XM_032649556
VERSION     XM_032649556.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4770
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4770
                     /gene="LOC116762512"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 11
                     Proteins, and 88% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762512"
     CDS             2552..3907
                     /gene="LOC116762512"
                     /codon_start=1
                     /product="monocarboxylate transporter 1 isoform X2"
                     /protein_id="XP_032505447.1"
                     /db_xref="GeneID:116762512"
                     /translation="MWDFPGPNPCPLHRQVDSQPKKSPISSILVNKYGSRPIMIVGGC
                     LSGCGLIAASFCNTVQELYLCVGVIGGLGLAFNLNPALTMIGKYFYKRRPLANGLAMA
                     GSPVFLSTLAPLNQAFFGIYGWRGSFLILGGLLLNCCVAGALMRPIGPKPTTAGRYKS
                     KESLQEAGKSDAKKGASDANTDLIGGNPKKEKRSVFQTLNKFLDLSLFKHRGFLLYLS
                     GNVLMFFGLFTPLVFLSNYGKSQHYSSEKSAFLLSILAFVDMVARPSMGLVANTKWIR
                     PRVQYFFAASIIANGVCHLAAPLSSSYIGFCVYAGFFGFAFGWLSSVLFETLMDLVGP
                     QRFSSAVGLVTIVECCPVLLGPPLLGRLNDIYGDYKYTYWACGIILIVAGIYLFIGMG
                     INYRFLAKEQKAEQQQKKESKEEETSIDVAEKPKEVTDAAESLEPKGIEGGPKEEESP
                     V"
     misc_feature    2621..3820
                     /gene="LOC116762512"
                     /note="monocarboxylate transporter 1; Region: 2A0113;
                     TIGR00892"
                     /db_xref="CDD:273325"
ORIGIN      
        1 gacaaagtgc tggcgagctg cgacgtgact actcggtcgc gtgggttccc gggcgagcag
       61 actaggcagc cggtgaaaga cgctacctgg accctgggcc ctgcgggact ccagccgcgc
      121 cgcggcgtca cgttcacgct cggcgccgtg agccgcgcat aacgatattt ggatttgaac
      181 tgcattttgg gatttatcta cacttaaaat gccaccggca gttggaggtc cagttggata
      241 caccccccca gatggaggct ggggatgggc agtggtagtt ggagctttca tttccatcgg
      301 cttctcctat gcgtttccca aatctattac tgtgttcttc aaagaaattg aaggtatatt
      361 caatgccacc accagtgaag tgtcatggat atcttccatc atgttggctg tcatgtatgg
      421 tggaggtaag tacccactaa ggcctgctgt tttaattttc attaagcaac cagatgctct
      481 gttttaggta actttaaaaa aaaatgtttt attcagtgag gtgttttgaa atggtatttc
      541 tcagagcttt atgtttagag tcacattttt tattcttgtt aacaatgaca actcttgctt
      601 tgtttgttgc actatagtat tccgaaacag aaataagaaa ttgtgaggat ttgttccaat
      661 tccgtatcac tgaacttaaa aaagctctga gggggaaaaa aatttttaaa ctctcagaaa
      721 aatgacgtgc acaacttatt tttcttattg ctctctgcta gactcttgag gtataaatgt
      781 aaataaagat ttttaaaaat tgatgttggg agaattaaag taaatcgggc taacctgaat
      841 agcacagttc aaagtctcag gtaaaatctt ttcatagtgt tagaattaaa gaactggata
      901 aaatcctcct tgttttgttt cttgtgatgt aattagtcct aaagcatttc agcttcatct
      961 taaacttaag ttttatcatt tttccccttt ctgttttctt taacatgtgg tgaaggaaat
     1021 gtggagagta cgttgcttac cttaatatca tttaaaatac tgtgggtttg tttgtttgtt
     1081 tgtttgtttg ccttggaaca tcaaaacaca atttaacatg taaaagtcaa aacctcccat
     1141 aataataaaa tatgtagttg cttagttagc agagattcga aagttaagtg tatttattgt
     1201 ttgggattga cagggtttca tgttgcttat ttagccaagc tttcactttt ttaatcataa
     1261 tttagtgcct cagattattt tcacatgagc tctttaaaag cccagtataa agattctgca
     1321 attcaactgt aaaaccttag tttaggcttc taatctggtg gcagattcaa ccaatgttta
     1381 ttaagccgta tgcacatagt cctcactagg ctaggtgtga gtgatagaga acactgatct
     1441 tgatccctgc ccttgggaag cttgtaatcc tcttgagaca ataatgtaat ctcatgaaac
     1501 aggaataagt atttgaagtc tgtaaattag ttcagtgctt aatctcattg cacagaaaaa
     1561 tgggtaagtt ttttgtgcct ttaaaatttt gaacgtatgc ctgttttgtc tattgtaaaa
     1621 ttaagtgctt tttaaaagaa cgtaagtggt aaattatagt acttactttt ttttcatgag
     1681 cccagagaaa tcaaaaggga ttttggacat tttctagctt ctgagaacca ataattttgg
     1741 aggctctgaa cttgatctgc caggatttct aatcaggttt tgactgatgg cttgaagaaa
     1801 ttggcgtaaa tattatccag aggtactcca ggtgctcagt gtacctttaa gctgattaca
     1861 aacaagaagt tcacatgctg caattcagag caagagcttg agagccgctt gcattttgca
     1921 tcagaagtaa gtgatgtcag ttgtgctaat tgcacatgac actttctttt gggaaaacag
     1981 ttccttcttt gtcctcaccc agagataact agcacatttc tctgaatttg tgttataata
     2041 ggcctacaaa ctgtacccct ctctattttt aatgatagct aattggggcc attcttcctg
     2101 aaataactct gaaagataaa ttgcatatca agagccttgt ggcataattt ttactaaatg
     2161 ggttattttg ttttgtttgg ctcttaggtg gtatgacccc ataagaatta tatttaaaac
     2221 tgccttaatt ctttaacttg tacatttcgg ccacaccctc accaataata tgttttgagt
     2281 tgtgagtggt ttagggttaa gttttccttc ctccctccct ccctccctcc atgtgctttg
     2341 attcacagat acatactgat acttgttaaa gtatattttt aaaggagaag atcttagtta
     2401 cttactcttg gttttggttt tttttttttt tttttttttt ttttttcggt acgcgggcct
     2461 ctcactgttg tggcctctct tgttgtggag cacagtctct ggacgcacgg gctcagcggc
     2521 catggctcac ggaccttagc cgctccgcag catgtgggat tttcccggac caaacccttg
     2581 tcccctgcat cggcaggtgg actctcaacc aaagaaaagt cctatcagca gtatcctggt
     2641 gaataaatat ggcagtcgtc caatcatgat tgttggcggc tgcttgtcag gctgtggctt
     2701 gatcgcagct tccttctgta acactgtgca ggaactttac ttgtgtgtcg gagtcattgg
     2761 aggtcttggg cttgccttca acttgaatcc agctttaacc atgattggca agtatttcta
     2821 caagaggcga ccgttggcaa atggactggc catggcaggc agtcctgtgt tcctctctac
     2881 cctggccccc cttaatcagg ctttctttgg tatctatggc tggagaggaa gcttcctaat
     2941 tcttgggggc ttactattaa actgctgtgt ggctggagct ctgatgagac caatcgggcc
     3001 taagccaacc actgcaggga gatataagtc taaagaatcc cttcaggaag ctggaaaatc
     3061 cgacgcaaaa aagggggcaa gtgatgcaaa tacagatctc attggaggaa atccgaaaaa
     3121 agagaaaaga tcagtcttcc aaacacttaa taaattcctg gacttatccc tgttcaagca
     3181 cagaggcttt ttgctctacc tgtctggaaa tgtgctcatg ttttttggac tatttacacc
     3241 tttggtcttt cttagtaatt atggcaagag tcagcattac tctagtgaga agtctgcctt
     3301 ccttctttcc attctggctt ttgttgacat ggtagccaga ccttctatgg gacttgtagc
     3361 caacacaaag tggataagac ctcgagttca gtattttttt gctgcttcta ttattgcaaa
     3421 tggagtttgt catctggcag cacctttgtc ctctagctat ataggattct gtgtctatgc
     3481 gggattcttc ggatttgcat ttgggtggct cagttcagta ttgtttgaaa cgctgatgga
     3541 ccttgttgga ccccagaggt tctccagtgc tgtgggattg gtgaccattg tggaatgctg
     3601 tcctgtcctg ctggggccac cacttttagg tcgtctcaat gacatatatg gagactacaa
     3661 atacacatac tgggcatgtg gtataatcct tattgtcgca ggcatctatc ttttcatcgg
     3721 catgggcatc aattaccgat ttcttgcaaa agaacagaaa gctgagcagc agcagaaaaa
     3781 ggaaagtaaa gaggaggaga ccagtataga tgttgctgag aagccaaaag aagttaccga
     3841 tgcagcagaa tctctggagc ctaaaggcat agaaggaggc cccaaggagg aggagagtcc
     3901 agtttgaacc tgtggggctg atgggtaaat ggagcagctc atgaccccaa atgttctatt
     3961 ggcctgtgat ctaccagtgg tgctcaatgc aaatactgga catttctgtg ggaatcatac
     4021 caggggttca ttgatggaat ttttgtttca ctccttacca gtagcctggg ctaaaaatgt
     4081 catagccttt gggaaggaag tggttggaaa agaatgagag aaggaagtcg gtttgtgttt
     4141 ttgtttgatt aaatctttgc ttttaacagt gtcatgataa tgtgctatga taatgtgata
     4201 ataatatgtg ccttaagttt tagtctttag ggagccttaa cttttaaaac cattctgctt
     4261 aattcatcca ttttaagtgt tctgttacaa ggaaaaataa ctagtttgag gcaaatctaa
     4321 aatttaaaat taatcttgct tcattgttat ttgtaataat agtgtcagac attgtcacta
     4381 gaagatttga aagttggggt ttttataaaa tcctgactaa aatattttcc tagcatcaat
     4441 agttgcttgg catatgtgcc tgctagatat atatttagga aatttaaggc ataagacttt
     4501 gcaaacatct tggctgttct agatgcagtg tgctcatcag tacacctcct ccagtatctt
     4561 ttcttggttt gcttattaga agccacgtgc ttgagagttg acttcattaa attactattt
     4621 ttgctccctt ttccaaagat aaattttgag tggtcataga tcaccgcccc ttttgagatc
     4681 acatagtatt ccccccccac tggaaaaatt agtattaaaa tacacaaaac tgtgtatttg
     4741 tgcctcctca gtaaattaaa catagacagg
//
LOCUS       XM_032649567            2733 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus monocarboxylate transporter 1
            (LOC116762512), transcript variant X3, mRNA.
ACCESSION   XM_032649567
VERSION     XM_032649567.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2733
                     /gene="LOC116762512"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762512"
     CDS             629..1870
                     /gene="LOC116762512"
                     /codon_start=1
                     /product="monocarboxylate transporter 1 isoform X3"
                     /protein_id="XP_032505458.1"
                     /db_xref="GeneID:116762512"
                     /translation="MIVGGCLSGCGLIAASFCNTVQELYLCVGVIGGLGLAFNLNPAL
                     TMIGKYFYKRRPLANGLAMAGSPVFLSTLAPLNQAFFGIYGWRGSFLILGGLLLNCCV
                     AGALMRPIGPKPTTAGRYKSKESLQEAGKSDAKKGASDANTDLIGGNPKKEKRSVFQT
                     LNKFLDLSLFKHRGFLLYLSGNVLMFFGLFTPLVFLSNYGKSQHYSSEKSAFLLSILA
                     FVDMVARPSMGLVANTKWIRPRVQYFFAASIIANGVCHLAAPLSSSYIGFCVYAGFFG
                     FAFGWLSSVLFETLMDLVGPQRFSSAVGLVTIVECCPVLLGPPLLGRLNDIYGDYKYT
                     YWACGIILIVAGIYLFIGMGINYRFLAKEQKAEQQQKKESKEEETSIDVAEKPKEVTD
                     AAESLEPKGIEGGPKEEESPV"
     misc_feature    629..1783
                     /gene="LOC116762512"
                     /note="monocarboxylate transporter 1; Region: 2A0113;
                     TIGR00892"
                     /db_xref="CDD:273325"
ORIGIN      
        1 gcttctaatc tggtggcaga ttcaaccaat gtttattaag ccgtatgcac atagtcctca
       61 ctaggctagg tgtgagtgat agagaacact gatcttgatc cctgcccttg ggaagcttgt
      121 aatcctcttg agacaataat gtaatctcat gaaacaggaa taagtatttg aagtctgtaa
      181 attagttcag tgcttaatct cattgcacag aaaaatgggt aagttttttg tgcctttaaa
      241 attttgaacg tatgcctgtt ttgtctattg taaaattaag tgctttttaa aagaacgtaa
      301 gtggtaaatt atagtactta cttttttttc atgagcccag agaaatcaaa agggattttg
      361 gacattttct agcttctgag aaccaataat tttggaggct ctgaacttga tctgccagga
      421 tttctaatca ggttttgact gatggcttga agaaattggc gtaaatatta tccagaggta
      481 ctccaggtgc tcagtgtacc tttaagctga ttacaaacaa gaagttcaca tgctgcaatt
      541 cagagcaaga gcttgagagc cgcttgcatt ttgcatcaga agtcctatca gcagtatcct
      601 ggtgaataaa tatggcagtc gtccaatcat gattgttggc ggctgcttgt caggctgtgg
      661 cttgatcgca gcttccttct gtaacactgt gcaggaactt tacttgtgtg tcggagtcat
      721 tggaggtctt gggcttgcct tcaacttgaa tccagcttta accatgattg gcaagtattt
      781 ctacaagagg cgaccgttgg caaatggact ggccatggca ggcagtcctg tgttcctctc
      841 taccctggcc ccccttaatc aggctttctt tggtatctat ggctggagag gaagcttcct
      901 aattcttggg ggcttactat taaactgctg tgtggctgga gctctgatga gaccaatcgg
      961 gcctaagcca accactgcag ggagatataa gtctaaagaa tcccttcagg aagctggaaa
     1021 atccgacgca aaaaaggggg caagtgatgc aaatacagat ctcattggag gaaatccgaa
     1081 aaaagagaaa agatcagtct tccaaacact taataaattc ctggacttat ccctgttcaa
     1141 gcacagaggc tttttgctct acctgtctgg aaatgtgctc atgttttttg gactatttac
     1201 acctttggtc tttcttagta attatggcaa gagtcagcat tactctagtg agaagtctgc
     1261 cttccttctt tccattctgg cttttgttga catggtagcc agaccttcta tgggacttgt
     1321 agccaacaca aagtggataa gacctcgagt tcagtatttt tttgctgctt ctattattgc
     1381 aaatggagtt tgtcatctgg cagcaccttt gtcctctagc tatataggat tctgtgtcta
     1441 tgcgggattc ttcggatttg catttgggtg gctcagttca gtattgtttg aaacgctgat
     1501 ggaccttgtt ggaccccaga ggttctccag tgctgtggga ttggtgacca ttgtggaatg
     1561 ctgtcctgtc ctgctggggc caccactttt aggtcgtctc aatgacatat atggagacta
     1621 caaatacaca tactgggcat gtggtataat ccttattgtc gcaggcatct atcttttcat
     1681 cggcatgggc atcaattacc gatttcttgc aaaagaacag aaagctgagc agcagcagaa
     1741 aaaggaaagt aaagaggagg agaccagtat agatgttgct gagaagccaa aagaagttac
     1801 cgatgcagca gaatctctgg agcctaaagg catagaagga ggccccaagg aggaggagag
     1861 tccagtttga acctgtgggg ctgatgggta aatggagcag ctcatgaccc caaatgttct
     1921 attggcctgt gatctaccag tggtgctcaa tgcaaatact ggacatttct gtgggaatca
     1981 taccaggggt tcattgatgg aatttttgtt tcactcctta ccagtagcct gggctaaaaa
     2041 tgtcatagcc tttgggaagg aagtggttgg aaaagaatga gagaaggaag tcggtttgtg
     2101 tttttgtttg attaaatctt tgcttttaac agtgtcatga taatgtgcta tgataatgtg
     2161 ataataatat gtgccttaag ttttagtctt tagggagcct taacttttaa aaccattctg
     2221 cttaattcat ccattttaag tgttctgtta caaggaaaaa taactagttt gaggcaaatc
     2281 taaaatttaa aattaatctt gcttcattgt tatttgtaat aatagtgtca gacattgtca
     2341 ctagaagatt tgaaagttgg ggtttttata aaatcctgac taaaatattt tcctagcatc
     2401 aatagttgct tggcatatgt gcctgctaga tatatattta ggaaatttaa ggcataagac
     2461 tttgcaaaca tcttggctgt tctagatgca gtgtgctcat cagtacacct cctccagtat
     2521 cttttcttgg tttgcttatt agaagccacg tgcttgagag ttgacttcat taaattacta
     2581 tttttgctcc cttttccaaa gataaatttt gagtggtcat agatcaccgc cccttttgag
     2641 atcacatagt attccccccc cactggaaaa attagtatta aaatacacaa aactgtgtat
     2701 ttgtgcctcc tcagtaaatt aaacatagac agg
//
LOCUS       XM_032649581            3874 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selectin P (SELP), transcript variant X1,
            mRNA.
ACCESSION   XM_032649581
VERSION     XM_032649581.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3874
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3874
                     /gene="SELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762520"
     CDS             613..3210
                     /gene="SELP"
                     /codon_start=1
                     /product="P-selectin isoform X1"
                     /protein_id="XP_032505472.1"
                     /db_xref="GeneID:116762520"
                     /translation="MHPSELYSAQPAWTPVAALTARAYSTTTSGSKNTRGGYSLGESC
                     NLTVQSWNFLETELVQEGELFREASLKSHHSNCQLCLNTEPGGAGARCLKAIWNWRFQ
                     RVVFRTTQLFCFSALISELINQKEVAAWTYHYSNKSYSWNYSRVFCQKYYTDLVAIQN
                     KNEIAYLNEAIPYYSSYYWIGIRKINNQWTWVGTKKTLTEEAENWADNEPNNKKNNQD
                     CVEIYIKSVSAPGKWNDEPCGKKKRALCYTASCQDMSCSKQGECIETIGNYTCSCYPG
                     FYGPECEYERNQYLVPTVIECSEFDLPQHMLMNCSHPLGNFPFNTHCSFHCAEGYTLN
                     GPSKLECLASGIWTNTPPQCVAVQCPPLKSPEQGSMTCLHSAKAFQHQSSCSFSCEEG
                     FALVGPKVVQCTASGVWTAPAPVCQAIACEPLESPVHGSMDCSLSSRAFQYNSNCSFH
                     CAKGFTLRGADTVRCADLGQWTAPAPVCQALQCQYLPASNKAQVNCSHPFGAFRYQST
                     CSFTCDEGFLLVGASVLQCLDTGNWNAPFPECQAVTCAPLPNPQNGTKTCVQPLGDSS
                     YKTTCQFTCDEGFSLSGPERLDCTPSGRWTDSPPTCDAIKCPELSAPERGSLDCPDTH
                     GEFTAGSTCHFSCNEGFKLEGSSHVECTASGRWTAPRPTCDDIVSAPTVEVQCPSLVT
                     PKQGTMSCQHHLGTFGLNTTCHFGCKAGFTLMGDSALRCRPSGQWTAVAPACRAVKCS
                     KLHVTEPIVMNCSNPLGNFSYGSTCSFRCPEGHLLSGSARAVCQEDGQWSAIMPACQA
                     GPLTIQEALTYFGGAVASTTGLVTGGLLLALLRKRCRQKDEGKSPLNPQSHLGTYGVF
                     TNAAFDPSP"
     misc_feature    1000..1356
                     /gene="SELP"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the type 1 transmembrane proteins: P(platlet)-,
                     E(endothelial)-, and L(leukocyte)- selectins (sels);
                     Region: CLECT_selectins_like; cd03592"
                     /db_xref="CDD:153062"
     misc_feature    order(1141..1143,1237..1239,1243..1248,1273..1275,
                     1279..1281,1312..1320)
                     /gene="SELP"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153062"
     misc_feature    order(1141..1143,1237..1239,1243..1245,1261..1263,
                     1273..1275,1279..1281,1312..1320)
                     /gene="SELP"
                     /note="PSGL-1 peptide binding surface; other site"
                     /db_xref="CDD:153062"
     misc_feature    <1378..1461
                     /gene="SELP"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1558..2232
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    2239..3000
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 ggctcagcgg ccatggctcg cgggcccagc cgctccgcgg catgtgggat cttcccggac
       61 cgggacacga acccgtgtcc cctgcgttgg caggcggact ctcaaccact gcgccaccaa
      121 ggaaggcccc ctagtttgtt attgttaaaa ttatggtatg tgtgttttct ccccagtgaa
      181 attctacccc cttaaaggca gaaactgggc cacatccctg gaacgtctaa ttcattactt
      241 gacacttagt aaatgtgcat tcaataaatc tgaaagagaa cacagtgtac tgttgatatc
      301 acttgctgcg aactctcttt ccatggcatg tgataaccca tacagatact cagctaatgt
      361 caagggctga attcttataa gagaataggg ccctgtgtaa aatctagttg gaaatacctc
      421 ccttgtgcca cggccaatac agctttcata taaacttcta cattttatga gaatgatttt
      481 tttggtaatg attacatgtt cctttctcaa agccatctca gattttgcac aacaccaagg
      541 gctgttgcaa aagattctcc atgctgtgta ccataaattg cggatgtgcc attcacattc
      601 acgtagcttc gaatgcatcc ctcagagtta tacagcgcac aacctgcatg gactcccgtg
      661 gcagccctga ctgcaagagc ttattcaact acgacatcgg gatcaaagaa cacaagggga
      721 ggctactcgt tgggggaatc ctgcaacctg actgtccaat catggaattt tttagaaact
      781 gagctggtcc aggaaggaga gctttttaga gaagcatccc tgaaatcaca tcacagcaac
      841 tgccaacttt gcctaaacac agagcccggt ggtgctggcg ccaggtgcct aaaagccatc
      901 tggaactgga gatttcagag agtggtcttc agaaccaccc aactcttttg cttcagtgcc
      961 ctcatctctg agctaattaa ccagaaagaa gtggcagcgt ggacctatca ctacagcaac
     1021 aaatcatatt catggaatta ttcccgggtg ttctgccaga agtactacac ggatttagta
     1081 gctatccaga ataaaaatga gattgcttac ctcaatgagg ccatacctta ctacagttct
     1141 tactactgga ttgggatccg aaagatcaac aatcaatgga cctgggtggg aaccaaaaag
     1201 actctcactg aggaggctga gaactgggct gacaacgagc ccaacaacaa gaagaacaac
     1261 caggactgcg tggagatcta catcaagagt gtgtcagccc ccggcaagtg gaatgatgag
     1321 ccctgtggga aaaaaaagcg ggcactgtgc tatacagcct cctgccagga tatgtcctgc
     1381 agcaagcaag gagagtgcat tgagaccatc ggaaactaca cctgctcctg ttaccctgga
     1441 ttctatggac cagaatgtga atatgaaaga aatcaatatc tcgtccccac agtcatagag
     1501 tgtagcgaat ttgacctccc tcaacacatg ctcatgaact gcagtcaccc tctgggaaac
     1561 ttccctttca acacacactg cagcttccac tgcgctgaag ggtacacgct gaatggaccc
     1621 agcaagctgg aatgtttggc ttctggaatc tggacgaata cgcctccaca gtgtgtagct
     1681 gtccagtgcc cacccctgaa gtctcctgag caaggaagca tgacctgtct ccactctgca
     1741 aaagcattcc agcaccagtc cagctgcagc ttcagttgcg aagagggatt tgcattagtt
     1801 ggaccaaagg tggtgcagtg cacagcctcg ggggtgtgga cagccccagc tccagtgtgt
     1861 caagccattg cctgtgagcc tctggagagt cctgtccacg gaagcatgga ttgctccctg
     1921 tcttcgagag catttcagta caacagcaac tgtagctttc attgtgctaa gggtttcaca
     1981 ctgagaggag ctgacacagt tcgatgtgct gatttgggac agtggacagc gccagcccca
     2041 gtctgtcaag cgttgcagtg ccagtatctt ccagcctcaa acaaggccca ggtgaactgc
     2101 tcccatccct ttggtgcctt taggtaccag tcgacctgca gcttcacctg tgatgagggc
     2161 ttcctcctgg tgggagcaag tgtgctgcaa tgcttggata cggggaactg gaatgctcct
     2221 tttccagaat gccaagccgt tacctgtgca cctctcccaa accctcagaa tggaacaaag
     2281 acctgtgtcc agcctcttgg agattccagt tataagacca catgccagtt cacctgtgat
     2341 gagggattct ctttatctgg accggaaaga ttggactgta ctccatctgg acgctggaca
     2401 gattccccac caacgtgtga cgccatcaag tgtccagaac tgtctgcccc agagcgggga
     2461 agcctggatt gtcctgacac tcacggagaa ttcactgctg gctccacctg ccatttctcc
     2521 tgtaacgagg gctttaagct ggaggggtcc agccatgttg aatgcacagc ttctggaaga
     2581 tggacagcac cccgaccgac ctgtgacgac atagtatcag ctcctactgt agaggtgcaa
     2641 tgcccatccc tcgtcactcc aaagcaagga acaatgtcct gtcagcatca tctgggaacc
     2701 tttggtttga ataccacttg ccactttgga tgcaaagctg gattcacact catgggagat
     2761 agtgctctcc gatgcagacc ttctggacaa tggacagcag tagctccagc atgcagagct
     2821 gtcaaatgct ccaagctaca cgttactgag ccaatagtga tgaactgctc caaccctctg
     2881 ggaaatttca gctatggatc aacctgcagc ttccgttgcc cagagggtca tttacttagt
     2941 ggctcagcga gagcagtgtg ccaagaggat ggccagtggt cagctatcat gccagcgtgc
     3001 caagcggggc cattgactat ccaggaagcc ttgacttatt ttggtggagc agtggcttct
     3061 acaacaggtt tagtgacggg tgggctactc ctggctctgc taagaaagcg ttgccgacaa
     3121 aaagatgaag gaaaaagccc cttgaaccct caaagccacc taggaacata cggagttttt
     3181 acaaatgctg catttgaccc aagcccttaa gagacccatc cttctcttgg tcacctcact
     3241 caacctccac cgacttgtgg ccttcccgac agacttgact ataactgtag cttatttgcc
     3301 gcagttttct gtaaatactt gtgaataaag ggcatggaat ttcctttaga ttagctgtgg
     3361 accagagcag gactgtatca caagccccaa ctctccaccc accacccctt cctgctccag
     3421 ttcctcttcc tccaacacaa gcctcagaag ctgggactga atgtttctgc tgtcgtctgt
     3481 gggctttgcc ccagctgtct cttgagatac taattaacta gagtctggag catctgactc
     3541 accagaagac cagaccgcag aaaaataaga atgactcttt atttttggat tggaggaaat
     3601 catcctctac tttgctggaa ggcaggaggc agctctgact tgagggaatt tctgtaggat
     3661 ttcctgggtc ctcactgctt gctgtttgtg aaagctttta gacctctgct gtgaggcttc
     3721 aagagaagcc tctggatggc accagaggct gcagaagact aaggatcgag acaggaaggt
     3781 acatgtcact gtagaccttc cctccaccgg tcattctccc ccagaggacc caaagaccaa
     3841 taccaatgtc taattaaaag gattccccca aatg
//
LOCUS       XM_032649588            3847 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selectin P (SELP), transcript variant X2,
            mRNA.
ACCESSION   XM_032649588
VERSION     XM_032649588.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3847
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3847
                     /gene="SELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762520"
     CDS             613..3183
                     /gene="SELP"
                     /codon_start=1
                     /product="P-selectin isoform X2"
                     /protein_id="XP_032505479.1"
                     /db_xref="GeneID:116762520"
                     /translation="MHPSELYSAQPAWTPVAALTARAYSTTTSGSKNTRGGYSLGESC
                     NLTVQSWNFLETELVQEGELFREASLKSHHSNCQLCLNTEPGGAGARCLKAIWNWRFQ
                     RVVFRTTQLFCFSALISELINQKEVAAWTYHYSNKSYSWNYSRVFCQKYYTDLVAIQN
                     KNEIAYLNEAIPYYSSYYWIGIRKINNQWTWVGTKKTLTEEAENWADNEPNNKKNNQD
                     CVEIYIKSVSAPGKWNDEPCGKKKRALCYTASCQDMSCSKQGECIETIGNYTCSCYPG
                     FYGPECEYVIECSEFDLPQHMLMNCSHPLGNFPFNTHCSFHCAEGYTLNGPSKLECLA
                     SGIWTNTPPQCVAVQCPPLKSPEQGSMTCLHSAKAFQHQSSCSFSCEEGFALVGPKVV
                     QCTASGVWTAPAPVCQAIACEPLESPVHGSMDCSLSSRAFQYNSNCSFHCAKGFTLRG
                     ADTVRCADLGQWTAPAPVCQALQCQYLPASNKAQVNCSHPFGAFRYQSTCSFTCDEGF
                     LLVGASVLQCLDTGNWNAPFPECQAVTCAPLPNPQNGTKTCVQPLGDSSYKTTCQFTC
                     DEGFSLSGPERLDCTPSGRWTDSPPTCDAIKCPELSAPERGSLDCPDTHGEFTAGSTC
                     HFSCNEGFKLEGSSHVECTASGRWTAPRPTCDDIVSAPTVEVQCPSLVTPKQGTMSCQ
                     HHLGTFGLNTTCHFGCKAGFTLMGDSALRCRPSGQWTAVAPACRAVKCSKLHVTEPIV
                     MNCSNPLGNFSYGSTCSFRCPEGHLLSGSARAVCQEDGQWSAIMPACQAGPLTIQEAL
                     TYFGGAVASTTGLVTGGLLLALLRKRCRQKDEGKSPLNPQSHLGTYGVFTNAAFDPSP
                     "
     misc_feature    1000..1356
                     /gene="SELP"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the type 1 transmembrane proteins: P(platlet)-,
                     E(endothelial)-, and L(leukocyte)- selectins (sels);
                     Region: CLECT_selectins_like; cd03592"
                     /db_xref="CDD:153062"
     misc_feature    order(1141..1143,1237..1239,1243..1248,1273..1275,
                     1279..1281,1312..1320)
                     /gene="SELP"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153062"
     misc_feature    order(1141..1143,1237..1239,1243..1245,1261..1263,
                     1273..1275,1279..1281,1312..1320)
                     /gene="SELP"
                     /note="PSGL-1 peptide binding surface; other site"
                     /db_xref="CDD:153062"
     misc_feature    <1378..1461
                     /gene="SELP"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1531..2205
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    2212..2973
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 ggctcagcgg ccatggctcg cgggcccagc cgctccgcgg catgtgggat cttcccggac
       61 cgggacacga acccgtgtcc cctgcgttgg caggcggact ctcaaccact gcgccaccaa
      121 ggaaggcccc ctagtttgtt attgttaaaa ttatggtatg tgtgttttct ccccagtgaa
      181 attctacccc cttaaaggca gaaactgggc cacatccctg gaacgtctaa ttcattactt
      241 gacacttagt aaatgtgcat tcaataaatc tgaaagagaa cacagtgtac tgttgatatc
      301 acttgctgcg aactctcttt ccatggcatg tgataaccca tacagatact cagctaatgt
      361 caagggctga attcttataa gagaataggg ccctgtgtaa aatctagttg gaaatacctc
      421 ccttgtgcca cggccaatac agctttcata taaacttcta cattttatga gaatgatttt
      481 tttggtaatg attacatgtt cctttctcaa agccatctca gattttgcac aacaccaagg
      541 gctgttgcaa aagattctcc atgctgtgta ccataaattg cggatgtgcc attcacattc
      601 acgtagcttc gaatgcatcc ctcagagtta tacagcgcac aacctgcatg gactcccgtg
      661 gcagccctga ctgcaagagc ttattcaact acgacatcgg gatcaaagaa cacaagggga
      721 ggctactcgt tgggggaatc ctgcaacctg actgtccaat catggaattt tttagaaact
      781 gagctggtcc aggaaggaga gctttttaga gaagcatccc tgaaatcaca tcacagcaac
      841 tgccaacttt gcctaaacac agagcccggt ggtgctggcg ccaggtgcct aaaagccatc
      901 tggaactgga gatttcagag agtggtcttc agaaccaccc aactcttttg cttcagtgcc
      961 ctcatctctg agctaattaa ccagaaagaa gtggcagcgt ggacctatca ctacagcaac
     1021 aaatcatatt catggaatta ttcccgggtg ttctgccaga agtactacac ggatttagta
     1081 gctatccaga ataaaaatga gattgcttac ctcaatgagg ccatacctta ctacagttct
     1141 tactactgga ttgggatccg aaagatcaac aatcaatgga cctgggtggg aaccaaaaag
     1201 actctcactg aggaggctga gaactgggct gacaacgagc ccaacaacaa gaagaacaac
     1261 caggactgcg tggagatcta catcaagagt gtgtcagccc ccggcaagtg gaatgatgag
     1321 ccctgtggga aaaaaaagcg ggcactgtgc tatacagcct cctgccagga tatgtcctgc
     1381 agcaagcaag gagagtgcat tgagaccatc ggaaactaca cctgctcctg ttaccctgga
     1441 ttctatggac cagaatgtga atatgtcata gagtgtagcg aatttgacct ccctcaacac
     1501 atgctcatga actgcagtca ccctctggga aacttccctt tcaacacaca ctgcagcttc
     1561 cactgcgctg aagggtacac gctgaatgga cccagcaagc tggaatgttt ggcttctgga
     1621 atctggacga atacgcctcc acagtgtgta gctgtccagt gcccacccct gaagtctcct
     1681 gagcaaggaa gcatgacctg tctccactct gcaaaagcat tccagcacca gtccagctgc
     1741 agcttcagtt gcgaagaggg atttgcatta gttggaccaa aggtggtgca gtgcacagcc
     1801 tcgggggtgt ggacagcccc agctccagtg tgtcaagcca ttgcctgtga gcctctggag
     1861 agtcctgtcc acggaagcat ggattgctcc ctgtcttcga gagcatttca gtacaacagc
     1921 aactgtagct ttcattgtgc taagggtttc acactgagag gagctgacac agttcgatgt
     1981 gctgatttgg gacagtggac agcgccagcc ccagtctgtc aagcgttgca gtgccagtat
     2041 cttccagcct caaacaaggc ccaggtgaac tgctcccatc cctttggtgc ctttaggtac
     2101 cagtcgacct gcagcttcac ctgtgatgag ggcttcctcc tggtgggagc aagtgtgctg
     2161 caatgcttgg atacggggaa ctggaatgct ccttttccag aatgccaagc cgttacctgt
     2221 gcacctctcc caaaccctca gaatggaaca aagacctgtg tccagcctct tggagattcc
     2281 agttataaga ccacatgcca gttcacctgt gatgagggat tctctttatc tggaccggaa
     2341 agattggact gtactccatc tggacgctgg acagattccc caccaacgtg tgacgccatc
     2401 aagtgtccag aactgtctgc cccagagcgg ggaagcctgg attgtcctga cactcacgga
     2461 gaattcactg ctggctccac ctgccatttc tcctgtaacg agggctttaa gctggagggg
     2521 tccagccatg ttgaatgcac agcttctgga agatggacag caccccgacc gacctgtgac
     2581 gacatagtat cagctcctac tgtagaggtg caatgcccat ccctcgtcac tccaaagcaa
     2641 ggaacaatgt cctgtcagca tcatctggga acctttggtt tgaataccac ttgccacttt
     2701 ggatgcaaag ctggattcac actcatggga gatagtgctc tccgatgcag accttctgga
     2761 caatggacag cagtagctcc agcatgcaga gctgtcaaat gctccaagct acacgttact
     2821 gagccaatag tgatgaactg ctccaaccct ctgggaaatt tcagctatgg atcaacctgc
     2881 agcttccgtt gcccagaggg tcatttactt agtggctcag cgagagcagt gtgccaagag
     2941 gatggccagt ggtcagctat catgccagcg tgccaagcgg ggccattgac tatccaggaa
     3001 gccttgactt attttggtgg agcagtggct tctacaacag gtttagtgac gggtgggcta
     3061 ctcctggctc tgctaagaaa gcgttgccga caaaaagatg aaggaaaaag ccccttgaac
     3121 cctcaaagcc acctaggaac atacggagtt tttacaaatg ctgcatttga cccaagccct
     3181 taagagaccc atccttctct tggtcacctc actcaacctc caccgacttg tggccttccc
     3241 gacagacttg actataactg tagcttattt gccgcagttt tctgtaaata cttgtgaata
     3301 aagggcatgg aatttccttt agattagctg tggaccagag caggactgta tcacaagccc
     3361 caactctcca cccaccaccc cttcctgctc cagttcctct tcctccaaca caagcctcag
     3421 aagctgggac tgaatgtttc tgctgtcgtc tgtgggcttt gccccagctg tctcttgaga
     3481 tactaattaa ctagagtctg gagcatctga ctcaccagaa gaccagaccg cagaaaaata
     3541 agaatgactc tttatttttg gattggagga aatcatcctc tactttgctg gaaggcagga
     3601 ggcagctctg acttgaggga atttctgtag gatttcctgg gtcctcactg cttgctgttt
     3661 gtgaaagctt ttagacctct gctgtgaggc ttcaagagaa gcctctggat ggcaccagag
     3721 gctgcagaag actaaggatc gagacaggaa ggtacatgtc actgtagacc ttccctccac
     3781 cggtcattct cccccagagg acccaaagac caataccaat gtctaattaa aaggattccc
     3841 ccaaatg
//
LOCUS       XM_032649593            3688 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selectin P (SELP), transcript variant X3,
            mRNA.
ACCESSION   XM_032649593
VERSION     XM_032649593.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3688
                     /gene="SELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762520"
     CDS             613..3024
                     /gene="SELP"
                     /codon_start=1
                     /product="P-selectin isoform X3"
                     /protein_id="XP_032505484.1"
                     /db_xref="GeneID:116762520"
                     /translation="MHPSELYSAQPAWTPVAALTARAYSTTTSGSKNTRGGYSLGESC
                     NLTVQSWNFLETELVQEGELFREASLKSHHSNCQLCLNTEPGGAGARCLKAIWNWRFQ
                     RVVFRTTQLFCFSALISELINQKEVAAWTYHYSNKSYSWNYSRVFCQKYYTDLVAIQN
                     KNEIAYLNEAIPYYSSYYWIGIRKINNQWTWVGTKKTLTEEAENWADNEPNNKKNNQD
                     CVEIYIKSVSAPGKWNDEPCGKKKRALCYTASCQDMSCSKQGECIETIGNYTCSCYPG
                     FYGPECEYERNQYLVPTVIECSEFDLPQHMLMNCSHPLGNFPFNTHCSFHCAEGYTLN
                     GPSKLECLASGIWTNTPPQCVAVQCPPLKSPEQGSMTCLHSAKAFQHQSSCSFSCEEG
                     FALVGPKVVQCTASGVWTAPAPVCQALQCQYLPASNKAQVNCSHPFGAFRYQSTCSFT
                     CDEGFLLVGASVLQCLDTGNWNAPFPECQAVTCAPLPNPQNGTKTCVQPLGDSSYKTT
                     CQFTCDEGFSLSGPERLDCTPSGRWTDSPPTCDAIKCPELSAPERGSLDCPDTHGEFT
                     AGSTCHFSCNEGFKLEGSSHVECTASGRWTAPRPTCDDIVSAPTVEVQCPSLVTPKQG
                     TMSCQHHLGTFGLNTTCHFGCKAGFTLMGDSALRCRPSGQWTAVAPACRAVKCSKLHV
                     TEPIVMNCSNPLGNFSYGSTCSFRCPEGHLLSGSARAVCQEDGQWSAIMPACQAGPLT
                     IQEALTYFGGAVASTTGLVTGGLLLALLRKRCRQKDEGKSPLNPQSHLGTYGVFTNAA
                     FDPSP"
     misc_feature    1000..1356
                     /gene="SELP"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the type 1 transmembrane proteins: P(platlet)-,
                     E(endothelial)-, and L(leukocyte)- selectins (sels);
                     Region: CLECT_selectins_like; cd03592"
                     /db_xref="CDD:153062"
     misc_feature    order(1141..1143,1237..1239,1243..1248,1273..1275,
                     1279..1281,1312..1320)
                     /gene="SELP"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153062"
     misc_feature    order(1141..1143,1237..1239,1243..1245,1261..1263,
                     1273..1275,1279..1281,1312..1320)
                     /gene="SELP"
                     /note="PSGL-1 peptide binding surface; other site"
                     /db_xref="CDD:153062"
     misc_feature    <1378..1461
                     /gene="SELP"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1558..2232
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    2053..2814
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 ggctcagcgg ccatggctcg cgggcccagc cgctccgcgg catgtgggat cttcccggac
       61 cgggacacga acccgtgtcc cctgcgttgg caggcggact ctcaaccact gcgccaccaa
      121 ggaaggcccc ctagtttgtt attgttaaaa ttatggtatg tgtgttttct ccccagtgaa
      181 attctacccc cttaaaggca gaaactgggc cacatccctg gaacgtctaa ttcattactt
      241 gacacttagt aaatgtgcat tcaataaatc tgaaagagaa cacagtgtac tgttgatatc
      301 acttgctgcg aactctcttt ccatggcatg tgataaccca tacagatact cagctaatgt
      361 caagggctga attcttataa gagaataggg ccctgtgtaa aatctagttg gaaatacctc
      421 ccttgtgcca cggccaatac agctttcata taaacttcta cattttatga gaatgatttt
      481 tttggtaatg attacatgtt cctttctcaa agccatctca gattttgcac aacaccaagg
      541 gctgttgcaa aagattctcc atgctgtgta ccataaattg cggatgtgcc attcacattc
      601 acgtagcttc gaatgcatcc ctcagagtta tacagcgcac aacctgcatg gactcccgtg
      661 gcagccctga ctgcaagagc ttattcaact acgacatcgg gatcaaagaa cacaagggga
      721 ggctactcgt tgggggaatc ctgcaacctg actgtccaat catggaattt tttagaaact
      781 gagctggtcc aggaaggaga gctttttaga gaagcatccc tgaaatcaca tcacagcaac
      841 tgccaacttt gcctaaacac agagcccggt ggtgctggcg ccaggtgcct aaaagccatc
      901 tggaactgga gatttcagag agtggtcttc agaaccaccc aactcttttg cttcagtgcc
      961 ctcatctctg agctaattaa ccagaaagaa gtggcagcgt ggacctatca ctacagcaac
     1021 aaatcatatt catggaatta ttcccgggtg ttctgccaga agtactacac ggatttagta
     1081 gctatccaga ataaaaatga gattgcttac ctcaatgagg ccatacctta ctacagttct
     1141 tactactgga ttgggatccg aaagatcaac aatcaatgga cctgggtggg aaccaaaaag
     1201 actctcactg aggaggctga gaactgggct gacaacgagc ccaacaacaa gaagaacaac
     1261 caggactgcg tggagatcta catcaagagt gtgtcagccc ccggcaagtg gaatgatgag
     1321 ccctgtggga aaaaaaagcg ggcactgtgc tatacagcct cctgccagga tatgtcctgc
     1381 agcaagcaag gagagtgcat tgagaccatc ggaaactaca cctgctcctg ttaccctgga
     1441 ttctatggac cagaatgtga atatgaaaga aatcaatatc tcgtccccac agtcatagag
     1501 tgtagcgaat ttgacctccc tcaacacatg ctcatgaact gcagtcaccc tctgggaaac
     1561 ttccctttca acacacactg cagcttccac tgcgctgaag ggtacacgct gaatggaccc
     1621 agcaagctgg aatgtttggc ttctggaatc tggacgaata cgcctccaca gtgtgtagct
     1681 gtccagtgcc cacccctgaa gtctcctgag caaggaagca tgacctgtct ccactctgca
     1741 aaagcattcc agcaccagtc cagctgcagc ttcagttgcg aagagggatt tgcattagtt
     1801 ggaccaaagg tggtgcagtg cacagcctcg ggggtgtgga cagccccagc tccagtgtgt
     1861 caagcgttgc agtgccagta tcttccagcc tcaaacaagg cccaggtgaa ctgctcccat
     1921 ccctttggtg cctttaggta ccagtcgacc tgcagcttca cctgtgatga gggcttcctc
     1981 ctggtgggag caagtgtgct gcaatgcttg gatacgggga actggaatgc tccttttcca
     2041 gaatgccaag ccgttacctg tgcacctctc ccaaaccctc agaatggaac aaagacctgt
     2101 gtccagcctc ttggagattc cagttataag accacatgcc agttcacctg tgatgaggga
     2161 ttctctttat ctggaccgga aagattggac tgtactccat ctggacgctg gacagattcc
     2221 ccaccaacgt gtgacgccat caagtgtcca gaactgtctg ccccagagcg gggaagcctg
     2281 gattgtcctg acactcacgg agaattcact gctggctcca cctgccattt ctcctgtaac
     2341 gagggcttta agctggaggg gtccagccat gttgaatgca cagcttctgg aagatggaca
     2401 gcaccccgac cgacctgtga cgacatagta tcagctccta ctgtagaggt gcaatgccca
     2461 tccctcgtca ctccaaagca aggaacaatg tcctgtcagc atcatctggg aacctttggt
     2521 ttgaatacca cttgccactt tggatgcaaa gctggattca cactcatggg agatagtgct
     2581 ctccgatgca gaccttctgg acaatggaca gcagtagctc cagcatgcag agctgtcaaa
     2641 tgctccaagc tacacgttac tgagccaata gtgatgaact gctccaaccc tctgggaaat
     2701 ttcagctatg gatcaacctg cagcttccgt tgcccagagg gtcatttact tagtggctca
     2761 gcgagagcag tgtgccaaga ggatggccag tggtcagcta tcatgccagc gtgccaagcg
     2821 gggccattga ctatccagga agccttgact tattttggtg gagcagtggc ttctacaaca
     2881 ggtttagtga cgggtgggct actcctggct ctgctaagaa agcgttgccg acaaaaagat
     2941 gaaggaaaaa gccccttgaa ccctcaaagc cacctaggaa catacggagt ttttacaaat
     3001 gctgcatttg acccaagccc ttaagagacc catccttctc ttggtcacct cactcaacct
     3061 ccaccgactt gtggccttcc cgacagactt gactataact gtagcttatt tgccgcagtt
     3121 ttctgtaaat acttgtgaat aaagggcatg gaatttcctt tagattagct gtggaccaga
     3181 gcaggactgt atcacaagcc ccaactctcc acccaccacc ccttcctgct ccagttcctc
     3241 ttcctccaac acaagcctca gaagctggga ctgaatgttt ctgctgtcgt ctgtgggctt
     3301 tgccccagct gtctcttgag atactaatta actagagtct ggagcatctg actcaccaga
     3361 agaccagacc gcagaaaaat aagaatgact ctttattttt ggattggagg aaatcatcct
     3421 ctactttgct ggaaggcagg aggcagctct gacttgaggg aatttctgta ggatttcctg
     3481 ggtcctcact gcttgctgtt tgtgaaagct tttagacctc tgctgtgagg cttcaagaga
     3541 agcctctgga tggcaccaga ggctgcagaa gactaaggat cgagacagga aggtacatgt
     3601 cactgtagac cttccctcca ccggtcattc tcccccagag gacccaaaga ccaataccaa
     3661 tgtctaatta aaaggattcc cccaaatg
//
LOCUS       XM_032649601            3661 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selectin P (SELP), transcript variant X4,
            mRNA.
ACCESSION   XM_032649601
VERSION     XM_032649601.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3661
                     /gene="SELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762520"
     CDS             613..2997
                     /gene="SELP"
                     /codon_start=1
                     /product="P-selectin isoform X4"
                     /protein_id="XP_032505492.1"
                     /db_xref="GeneID:116762520"
                     /translation="MHPSELYSAQPAWTPVAALTARAYSTTTSGSKNTRGGYSLGESC
                     NLTVQSWNFLETELVQEGELFREASLKSHHSNCQLCLNTEPGGAGARCLKAIWNWRFQ
                     RVVFRTTQLFCFSALISELINQKEVAAWTYHYSNKSYSWNYSRVFCQKYYTDLVAIQN
                     KNEIAYLNEAIPYYSSYYWIGIRKINNQWTWVGTKKTLTEEAENWADNEPNNKKNNQD
                     CVEIYIKSVSAPGKWNDEPCGKKKRALCYTASCQDMSCSKQGECIETIGNYTCSCYPG
                     FYGPECEYVIECSEFDLPQHMLMNCSHPLGNFPFNTHCSFHCAEGYTLNGPSKLECLA
                     SGIWTNTPPQCVAVQCPPLKSPEQGSMTCLHSAKAFQHQSSCSFSCEEGFALVGPKVV
                     QCTASGVWTAPAPVCQALQCQYLPASNKAQVNCSHPFGAFRYQSTCSFTCDEGFLLVG
                     ASVLQCLDTGNWNAPFPECQAVTCAPLPNPQNGTKTCVQPLGDSSYKTTCQFTCDEGF
                     SLSGPERLDCTPSGRWTDSPPTCDAIKCPELSAPERGSLDCPDTHGEFTAGSTCHFSC
                     NEGFKLEGSSHVECTASGRWTAPRPTCDDIVSAPTVEVQCPSLVTPKQGTMSCQHHLG
                     TFGLNTTCHFGCKAGFTLMGDSALRCRPSGQWTAVAPACRAVKCSKLHVTEPIVMNCS
                     NPLGNFSYGSTCSFRCPEGHLLSGSARAVCQEDGQWSAIMPACQAGPLTIQEALTYFG
                     GAVASTTGLVTGGLLLALLRKRCRQKDEGKSPLNPQSHLGTYGVFTNAAFDPSP"
     misc_feature    1000..1356
                     /gene="SELP"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the type 1 transmembrane proteins: P(platlet)-,
                     E(endothelial)-, and L(leukocyte)- selectins (sels);
                     Region: CLECT_selectins_like; cd03592"
                     /db_xref="CDD:153062"
     misc_feature    order(1141..1143,1237..1239,1243..1248,1273..1275,
                     1279..1281,1312..1320)
                     /gene="SELP"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153062"
     misc_feature    order(1141..1143,1237..1239,1243..1245,1261..1263,
                     1273..1275,1279..1281,1312..1320)
                     /gene="SELP"
                     /note="PSGL-1 peptide binding surface; other site"
                     /db_xref="CDD:153062"
     misc_feature    <1378..1461
                     /gene="SELP"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1531..2205
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    2026..2787
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 ggctcagcgg ccatggctcg cgggcccagc cgctccgcgg catgtgggat cttcccggac
       61 cgggacacga acccgtgtcc cctgcgttgg caggcggact ctcaaccact gcgccaccaa
      121 ggaaggcccc ctagtttgtt attgttaaaa ttatggtatg tgtgttttct ccccagtgaa
      181 attctacccc cttaaaggca gaaactgggc cacatccctg gaacgtctaa ttcattactt
      241 gacacttagt aaatgtgcat tcaataaatc tgaaagagaa cacagtgtac tgttgatatc
      301 acttgctgcg aactctcttt ccatggcatg tgataaccca tacagatact cagctaatgt
      361 caagggctga attcttataa gagaataggg ccctgtgtaa aatctagttg gaaatacctc
      421 ccttgtgcca cggccaatac agctttcata taaacttcta cattttatga gaatgatttt
      481 tttggtaatg attacatgtt cctttctcaa agccatctca gattttgcac aacaccaagg
      541 gctgttgcaa aagattctcc atgctgtgta ccataaattg cggatgtgcc attcacattc
      601 acgtagcttc gaatgcatcc ctcagagtta tacagcgcac aacctgcatg gactcccgtg
      661 gcagccctga ctgcaagagc ttattcaact acgacatcgg gatcaaagaa cacaagggga
      721 ggctactcgt tgggggaatc ctgcaacctg actgtccaat catggaattt tttagaaact
      781 gagctggtcc aggaaggaga gctttttaga gaagcatccc tgaaatcaca tcacagcaac
      841 tgccaacttt gcctaaacac agagcccggt ggtgctggcg ccaggtgcct aaaagccatc
      901 tggaactgga gatttcagag agtggtcttc agaaccaccc aactcttttg cttcagtgcc
      961 ctcatctctg agctaattaa ccagaaagaa gtggcagcgt ggacctatca ctacagcaac
     1021 aaatcatatt catggaatta ttcccgggtg ttctgccaga agtactacac ggatttagta
     1081 gctatccaga ataaaaatga gattgcttac ctcaatgagg ccatacctta ctacagttct
     1141 tactactgga ttgggatccg aaagatcaac aatcaatgga cctgggtggg aaccaaaaag
     1201 actctcactg aggaggctga gaactgggct gacaacgagc ccaacaacaa gaagaacaac
     1261 caggactgcg tggagatcta catcaagagt gtgtcagccc ccggcaagtg gaatgatgag
     1321 ccctgtggga aaaaaaagcg ggcactgtgc tatacagcct cctgccagga tatgtcctgc
     1381 agcaagcaag gagagtgcat tgagaccatc ggaaactaca cctgctcctg ttaccctgga
     1441 ttctatggac cagaatgtga atatgtcata gagtgtagcg aatttgacct ccctcaacac
     1501 atgctcatga actgcagtca ccctctggga aacttccctt tcaacacaca ctgcagcttc
     1561 cactgcgctg aagggtacac gctgaatgga cccagcaagc tggaatgttt ggcttctgga
     1621 atctggacga atacgcctcc acagtgtgta gctgtccagt gcccacccct gaagtctcct
     1681 gagcaaggaa gcatgacctg tctccactct gcaaaagcat tccagcacca gtccagctgc
     1741 agcttcagtt gcgaagaggg atttgcatta gttggaccaa aggtggtgca gtgcacagcc
     1801 tcgggggtgt ggacagcccc agctccagtg tgtcaagcgt tgcagtgcca gtatcttcca
     1861 gcctcaaaca aggcccaggt gaactgctcc catccctttg gtgcctttag gtaccagtcg
     1921 acctgcagct tcacctgtga tgagggcttc ctcctggtgg gagcaagtgt gctgcaatgc
     1981 ttggatacgg ggaactggaa tgctcctttt ccagaatgcc aagccgttac ctgtgcacct
     2041 ctcccaaacc ctcagaatgg aacaaagacc tgtgtccagc ctcttggaga ttccagttat
     2101 aagaccacat gccagttcac ctgtgatgag ggattctctt tatctggacc ggaaagattg
     2161 gactgtactc catctggacg ctggacagat tccccaccaa cgtgtgacgc catcaagtgt
     2221 ccagaactgt ctgccccaga gcggggaagc ctggattgtc ctgacactca cggagaattc
     2281 actgctggct ccacctgcca tttctcctgt aacgagggct ttaagctgga ggggtccagc
     2341 catgttgaat gcacagcttc tggaagatgg acagcacccc gaccgacctg tgacgacata
     2401 gtatcagctc ctactgtaga ggtgcaatgc ccatccctcg tcactccaaa gcaaggaaca
     2461 atgtcctgtc agcatcatct gggaaccttt ggtttgaata ccacttgcca ctttggatgc
     2521 aaagctggat tcacactcat gggagatagt gctctccgat gcagaccttc tggacaatgg
     2581 acagcagtag ctccagcatg cagagctgtc aaatgctcca agctacacgt tactgagcca
     2641 atagtgatga actgctccaa ccctctggga aatttcagct atggatcaac ctgcagcttc
     2701 cgttgcccag agggtcattt acttagtggc tcagcgagag cagtgtgcca agaggatggc
     2761 cagtggtcag ctatcatgcc agcgtgccaa gcggggccat tgactatcca ggaagccttg
     2821 acttattttg gtggagcagt ggcttctaca acaggtttag tgacgggtgg gctactcctg
     2881 gctctgctaa gaaagcgttg ccgacaaaaa gatgaaggaa aaagcccctt gaaccctcaa
     2941 agccacctag gaacatacgg agtttttaca aatgctgcat ttgacccaag cccttaagag
     3001 acccatcctt ctcttggtca cctcactcaa cctccaccga cttgtggcct tcccgacaga
     3061 cttgactata actgtagctt atttgccgca gttttctgta aatacttgtg aataaagggc
     3121 atggaatttc ctttagatta gctgtggacc agagcaggac tgtatcacaa gccccaactc
     3181 tccacccacc accccttcct gctccagttc ctcttcctcc aacacaagcc tcagaagctg
     3241 ggactgaatg tttctgctgt cgtctgtggg ctttgcccca gctgtctctt gagatactaa
     3301 ttaactagag tctggagcat ctgactcacc agaagaccag accgcagaaa aataagaatg
     3361 actctttatt tttggattgg aggaaatcat cctctacttt gctggaaggc aggaggcagc
     3421 tctgacttga gggaatttct gtaggatttc ctgggtcctc actgcttgct gtttgtgaaa
     3481 gcttttagac ctctgctgtg aggcttcaag agaagcctct ggatggcacc agaggctgca
     3541 gaagactaag gatcgagaca ggaaggtaca tgtcactgta gaccttccct ccaccggtca
     3601 ttctccccca gaggacccaa agaccaatac caatgtctaa ttaaaaggat tcccccaaat
     3661 g
//
LOCUS       XM_032649609            3077 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selectin P (SELP), transcript variant X5,
            mRNA.
ACCESSION   XM_032649609
VERSION     XM_032649609.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3077
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3077
                     /gene="SELP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762520"
     CDS             80..2413
                     /gene="SELP"
                     /codon_start=1
                     /product="P-selectin isoform X5"
                     /protein_id="XP_032505500.1"
                     /db_xref="GeneID:116762520"
                     /translation="MARCLKAIWNWRFQRVVFRTTQLFCFSALISELINQKEVAAWTY
                     HYSNKSYSWNYSRVFCQKYYTDLVAIQNKNEIAYLNEAIPYYSSYYWIGIRKINNQWT
                     WVGTKKTLTEEAENWADNEPNNKKNNQDCVEIYIKSVSAPGKWNDEPCGKKKRALCYT
                     ASCQDMSCSKQGECIETIGNYTCSCYPGFYGPECEYERNQYLVPTVIECSEFDLPQHM
                     LMNCSHPLGNFPFNTHCSFHCAEGYTLNGPSKLECLASGIWTNTPPQCVAVQCPPLKS
                     PEQGSMTCLHSAKAFQHQSSCSFSCEEGFALVGPKVVQCTASGVWTAPAPVCQAIACE
                     PLESPVHGSMDCSLSSRAFQYNSNCSFHCAKGFTLRGADTVRCADLGQWTAPAPVCQA
                     LQCQYLPASNKAQVNCSHPFGAFRYQSTCSFTCDEGFLLVGASVLQCLDTGNWNAPFP
                     ECQAVTCAPLPNPQNGTKTCVQPLGDSSYKTTCQFTCDEGFSLSGPERLDCTPSGRWT
                     DSPPTCDAIKCPELSAPERGSLDCPDTHGEFTAGSTCHFSCNEGFKLEGSSHVECTAS
                     GRWTAPRPTCDDIVSAPTVEVQCPSLVTPKQGTMSCQHHLGTFGLNTTCHFGCKAGFT
                     LMGDSALRCRPSGQWTAVAPACRAVKCSKLHVTEPIVMNCSNPLGNFSYGSTCSFRCP
                     EGHLLSGSARAVCQEDGQWSAIMPACQAGPLTIQEALTYFGGAVASTTGLVTGGLLLA
                     LLRKRCRQKDEGKSPLNPQSHLGTYGVFTNAAFDPSP"
     misc_feature    203..559
                     /gene="SELP"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the type 1 transmembrane proteins: P(platlet)-,
                     E(endothelial)-, and L(leukocyte)- selectins (sels);
                     Region: CLECT_selectins_like; cd03592"
                     /db_xref="CDD:153062"
     misc_feature    order(344..346,440..442,446..451,476..478,482..484,
                     515..523)
                     /gene="SELP"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153062"
     misc_feature    order(344..346,440..442,446..448,464..466,476..478,
                     482..484,515..523)
                     /gene="SELP"
                     /note="PSGL-1 peptide binding surface; other site"
                     /db_xref="CDD:153062"
     misc_feature    <581..664
                     /gene="SELP"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    761..1435
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    1442..2203
                     /gene="SELP"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
ORIGIN      
        1 gacagctgag gggaggcagc aagactataa gaagtctggg ctgcacagac agcagtaagc
       61 tggctgtgtc acagaggaga tggccaggtg cctaaaagcc atctggaact ggagatttca
      121 gagagtggtc ttcagaacca cccaactctt ttgcttcagt gccctcatct ctgagctaat
      181 taaccagaaa gaagtggcag cgtggaccta tcactacagc aacaaatcat attcatggaa
      241 ttattcccgg gtgttctgcc agaagtacta cacggattta gtagctatcc agaataaaaa
      301 tgagattgct tacctcaatg aggccatacc ttactacagt tcttactact ggattgggat
      361 ccgaaagatc aacaatcaat ggacctgggt gggaaccaaa aagactctca ctgaggaggc
      421 tgagaactgg gctgacaacg agcccaacaa caagaagaac aaccaggact gcgtggagat
      481 ctacatcaag agtgtgtcag cccccggcaa gtggaatgat gagccctgtg ggaaaaaaaa
      541 gcgggcactg tgctatacag cctcctgcca ggatatgtcc tgcagcaagc aaggagagtg
      601 cattgagacc atcggaaact acacctgctc ctgttaccct ggattctatg gaccagaatg
      661 tgaatatgaa agaaatcaat atctcgtccc cacagtcata gagtgtagcg aatttgacct
      721 ccctcaacac atgctcatga actgcagtca ccctctggga aacttccctt tcaacacaca
      781 ctgcagcttc cactgcgctg aagggtacac gctgaatgga cccagcaagc tggaatgttt
      841 ggcttctgga atctggacga atacgcctcc acagtgtgta gctgtccagt gcccacccct
      901 gaagtctcct gagcaaggaa gcatgacctg tctccactct gcaaaagcat tccagcacca
      961 gtccagctgc agcttcagtt gcgaagaggg atttgcatta gttggaccaa aggtggtgca
     1021 gtgcacagcc tcgggggtgt ggacagcccc agctccagtg tgtcaagcca ttgcctgtga
     1081 gcctctggag agtcctgtcc acggaagcat ggattgctcc ctgtcttcga gagcatttca
     1141 gtacaacagc aactgtagct ttcattgtgc taagggtttc acactgagag gagctgacac
     1201 agttcgatgt gctgatttgg gacagtggac agcgccagcc ccagtctgtc aagcgttgca
     1261 gtgccagtat cttccagcct caaacaaggc ccaggtgaac tgctcccatc cctttggtgc
     1321 ctttaggtac cagtcgacct gcagcttcac ctgtgatgag ggcttcctcc tggtgggagc
     1381 aagtgtgctg caatgcttgg atacggggaa ctggaatgct ccttttccag aatgccaagc
     1441 cgttacctgt gcacctctcc caaaccctca gaatggaaca aagacctgtg tccagcctct
     1501 tggagattcc agttataaga ccacatgcca gttcacctgt gatgagggat tctctttatc
     1561 tggaccggaa agattggact gtactccatc tggacgctgg acagattccc caccaacgtg
     1621 tgacgccatc aagtgtccag aactgtctgc cccagagcgg ggaagcctgg attgtcctga
     1681 cactcacgga gaattcactg ctggctccac ctgccatttc tcctgtaacg agggctttaa
     1741 gctggagggg tccagccatg ttgaatgcac agcttctgga agatggacag caccccgacc
     1801 gacctgtgac gacatagtat cagctcctac tgtagaggtg caatgcccat ccctcgtcac
     1861 tccaaagcaa ggaacaatgt cctgtcagca tcatctggga acctttggtt tgaataccac
     1921 ttgccacttt ggatgcaaag ctggattcac actcatggga gatagtgctc tccgatgcag
     1981 accttctgga caatggacag cagtagctcc agcatgcaga gctgtcaaat gctccaagct
     2041 acacgttact gagccaatag tgatgaactg ctccaaccct ctgggaaatt tcagctatgg
     2101 atcaacctgc agcttccgtt gcccagaggg tcatttactt agtggctcag cgagagcagt
     2161 gtgccaagag gatggccagt ggtcagctat catgccagcg tgccaagcgg ggccattgac
     2221 tatccaggaa gccttgactt attttggtgg agcagtggct tctacaacag gtttagtgac
     2281 gggtgggcta ctcctggctc tgctaagaaa gcgttgccga caaaaagatg aaggaaaaag
     2341 ccccttgaac cctcaaagcc acctaggaac atacggagtt tttacaaatg ctgcatttga
     2401 cccaagccct taagagaccc atccttctct tggtcacctc actcaacctc caccgacttg
     2461 tggccttccc gacagacttg actataactg tagcttattt gccgcagttt tctgtaaata
     2521 cttgtgaata aagggcatgg aatttccttt agattagctg tggaccagag caggactgta
     2581 tcacaagccc caactctcca cccaccaccc cttcctgctc cagttcctct tcctccaaca
     2641 caagcctcag aagctgggac tgaatgtttc tgctgtcgtc tgtgggcttt gccccagctg
     2701 tctcttgaga tactaattaa ctagagtctg gagcatctga ctcaccagaa gaccagaccg
     2761 cagaaaaata agaatgactc tttatttttg gattggagga aatcatcctc tactttgctg
     2821 gaaggcagga ggcagctctg acttgaggga atttctgtag gatttcctgg gtcctcactg
     2881 cttgctgttt gtgaaagctt ttagacctct gctgtgaggc ttcaagagaa gcctctggat
     2941 ggcaccagag gctgcagaag actaaggatc gagacaggaa ggtacatgtc actgtagacc
     3001 ttccctccac cggtcattct cccccagagg acccaaagac caataccaat gtctaattaa
     3061 aaggattccc ccaaatg
//
LOCUS       XM_032649622            2249 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selectin L (SELL), mRNA.
ACCESSION   XM_032649622
VERSION     XM_032649622.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2249
                     /gene="SELL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 22 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762543"
     CDS             154..1272
                     /gene="SELL"
                     /codon_start=1
                     /product="L-selectin"
                     /protein_id="XP_032505513.1"
                     /db_xref="GeneID:116762543"
                     /translation="MIFPWKCQSAQRSLWNVFELWVWTVLCCDFFAHHGTDCWTYHYS
                     KRPMTWEKARMFCRKNYTDLVAIQNKGEIEYLNKTLPFSPKYYWIGIRKVGGAWTWVG
                     TNKSLTEEAENWGHGEPNNKKSKEDCVEIYIKRAKDAGKWNDDACHKAKAALCYTASC
                     QPLSCSGHGQCMEIINNYTCNCDLGHYGPQCQFVTQCEPLEAPELGTMACIHPLGNFS
                     FTSQCAFNCFEGADIVGIEETTCGPFGNWSSPKPTCRVIQCEPLTAPDFGTMDCSHLL
                     VDFGFTSTCTFSCSEGAELIGEKKTVCGSSGNWSSPSPVCQKVDRNFSRIKEGDYNPL
                     FIPVAVMVTTFSGLAFIIWLARRLKKGKKSRRSMDEPY"
     misc_feature    268..624
                     /gene="SELL"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the type 1 transmembrane proteins: P(platlet)-,
                     E(endothelial)-, and L(leukocyte)- selectins (sels);
                     Region: CLECT_selectins_like; cd03592"
                     /db_xref="CDD:153062"
     misc_feature    order(409..411,505..507,511..516,541..543,547..549,
                     580..588)
                     /gene="SELL"
                     /note="carbohydrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153062"
     misc_feature    order(409..411,505..507,511..513,529..531,541..543,
                     547..549,580..588)
                     /gene="SELL"
                     /note="PSGL-1 peptide binding surface; other site"
                     /db_xref="CDD:153062"
     misc_feature    <646..729
                     /gene="SELL"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    742..918
                     /gene="SELL"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(772..774,835..837)
                     /gene="SELL"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    928..1104
                     /gene="SELL"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(958..960,1021..1023)
                     /gene="SELL"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
ORIGIN      
        1 ttggttagag aaataaaaga aagtaagtct ttctggggac agtgagtgca atctccctgc
       61 acacccatcc ttgggcaagg acccagagac ctctggtact gagcgcagag gctgaagtgc
      121 tacagaagaa ctatagaagg acggagcaaa gccatgatat ttccatggaa atgccagagt
      181 gctcagagga gcttatggaa tgtttttgag ctgtgggtct ggactgtgct ctgttgtgat
      241 ttcttcgcac atcatggaac cgattgctgg acttaccatt attctaaaag acccatgacc
      301 tgggaaaagg ctagaatgtt ctgcagaaaa aattacacgg atttagttgc catacaaaac
      361 aaaggggaga ttgagtacct gaacaagacg cttcccttca gtcctaaata ctactggata
      421 ggaatccgga aggtaggagg ggcatggacc tgggtaggga ccaacaaatc tctcaccgaa
      481 gaagcggaga actggggcca tggggagccc aacaacaaga agagtaaaga agactgtgtg
      541 gagatctaca tcaagagggc aaaagacgca gggaaatgga atgacgacgc ctgccacaaa
      601 gcaaaggcag ccctctgcta cacagcttct tgtcaaccct tgtcatgcag cggccatgga
      661 caatgtatgg aaatcatcaa taattacacc tgcaactgtg atttggggca ctacgggccc
      721 cagtgtcagt tcgtgactca gtgtgagcct ttggaggccc cagagctggg taccatggcc
      781 tgtattcacc ctttgggaaa cttcagcttc acatcacagt gtgccttcaa ctgctttgag
      841 ggagcagaca tagttgggat tgaagaaacc acttgtggac catttggaaa ctggtcatct
      901 ccaaagccaa catgtcgagt gattcagtgt gagcctctaa cagcacccga ttttggaacc
      961 atggactgta gtcacctcct ggtcgacttt ggctttacct ccacgtgtac cttcagctgc
     1021 tcagaaggag ctgagttaat tggggaaaag aaaactgttt gtggatcatc tggaaattgg
     1081 tccagcccta gtccagtatg tcaaaaagtg gacaggaatt tctcaagaat caaggagggt
     1141 gactataacc ccctcttcat tccggtggca gtcatggtta ccacattctc tgggttggca
     1201 tttatcattt ggctggcaag gagattaaaa aaaggcaaaa agtctcggag aagcatggat
     1261 gagccgtatt aaacaacctg ctgtgaaaga aaattcttgg gaaactgaag tgtcactgga
     1321 tccttcgaat ccccctccat gcaaagtttt gcctggtggc atcttctaca ctgaagatga
     1381 agtgtgtcta tttcagtaca tctgaaaagt tttcaatacg accagctgct ccttctgttt
     1441 ccattttgcc ccatcacccc tacccccgca agtttcagtg tgcagttgtg ggttttatag
     1501 ctcagtattt tattcttttt tccatggaca aacaagacca tgggaaaagg attactgtgg
     1561 aacataaata tgccaatttc actctctttc tcaactctgg cttccagctt caattctgag
     1621 ctgtacctga tgacatatac tttgaaatat agcgaaaatt tgatacatat gcaactacag
     1681 gctcagtttt gttacagatc acattttacc tccccagccc tccagtgtac tgtggagaca
     1741 tattcctata gaaagtttat aaaattgatg ttacccttgc tttccagctc cagcagagta
     1801 atggggatct gctccaacta ggaaaagtcc tgtttgcact gcagccccag cttctataaa
     1861 tggtaggcca tcctatttaa ctgccccagg ctcccacctt cttcagccat ctccccttct
     1921 cagttgcctg acttccacac ggagcagctc atgaccacca agcaaaacga gagatgagaa
     1981 agatagcctg cactgttggg tttttctttt tggatttggg ttttaatgtc gcgtttttgt
     2041 tattgcgggt ccttcctcac ccccaaatcc tcttacgtat ccacctagat tctatctact
     2101 ctttatgatt catctcgggc atcccccacc cttaccactg ttttcataac aagtccttaa
     2161 ctagtccaac ctgtgacaaa ctccccttcc tggcgtccta ctgcgagctt agtcagtaac
     2221 atgcaatttt gcacttaaat acagttttt
//
LOCUS       XM_032649636            5406 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nestin (NES), mRNA.
ACCESSION   XM_032649636
VERSION     XM_032649636.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5406
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5406
                     /gene="NES"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 33 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116762550"
     CDS             144..4859
                     /gene="NES"
                     /codon_start=1
                     /product="nestin"
                     /protein_id="XP_032505527.1"
                     /db_xref="GeneID:116762550"
                     /translation="MEGCLGEESFQMWELNRRLEAYLARVKALEEQNELLSAELGGLR
                     AQAGDASWRARADDELAALRALVDQRWREKRAAEVARDNLEEEVEGVASRCQQLRLAR
                     ERTAEETARSRRAVEAEKCAQAWLSTQAAELERELEALRAAHEEERAGLNAQAACAPR
                     GPAPPRGPPVPAPEVEELALRLGEAWRGAVRGYQERVAHMETSLGQARERLGHALQGA
                     REGRLKLQQLQAERSGLQERRAALEQRLEGRWQERLRATEQFQLSVEALEQEKQGLQS
                     QIAQVLEGRQQLAHLKMSLSLEVATYRTLLEAENSRLQTPGSGSKASLSFLDPKLELH
                     FPGTPEGRRLGPLLSVLSPTPLSSSLPDTLETPVPGFLKSQELLQGHAPTSASTPIPP
                     TPQAPRPATDAKIRAQDAPLSLPQPQVGVQQVPEAVWAEAKVAIPASVLPGPEEPGGK
                     EQEPSPGQSSEDHASLAPALSPDHPSLEAKDGEPSGSSRFQEEGEGQIWGLAEKETAV
                     EVKVISSLQQETWQEEGDLDMKEIQDSLGPLEKETLKSLEEEIQEPLISLEKQRHETM
                     RSLEKENQESLRSLEEENLETLKTLEKENQELLQSLEGKEMEVMRPLEKETLEVLKPI
                     GREDPQTLQSPEKESQEIMRSLQGNVGAFLSPGKENQELVRSLEEENFESLRALEKER
                     QEPLRCQDVENQETLRPLAKENLEPLRSLEEKDQETSRPLGKENQPLRSLEKEDQMTL
                     SPLEKVKPEALKSLGKDQEIDRLLEKENQDLLRSLNEESVEAVRSLGTETLEPLKPTG
                     EENLEMLKPLEKESQEPLGSVEGNQETLRPLEKETQKSLSSLGGQSVEDMRSPEEVDK
                     GSQRYLEEEENVEKGENSELPRSLEEEGQELPLSAHLQKWEDTVQGAQELDQETPPGR
                     PELDSADEAEMEPREWESFAGKGEAVDQGELQLTATGKAWSPGEGQLGSSEPKEQRVS
                     AEGASGVGGTEGLQDPEEQSDQVGTPGLPARQGMSEVLEPVLEGEDVAPSDGRASPEV
                     ALGLETAGAEQGPEQEAVGLEDPGGLAREEVMEPPLGEEGLEAKRVQGLEGPRKELEE
                     AAALEPELSTLPRKSRDPLDTARGWEESEPDAPEEAEEMFPAETSCCDGSDTPQPRPL
                     SSEGAKEDAEAVLGPPSPRPTESCSPIPIPEDAPGPQPLAEGSQEASWGLAGRAEVLG
                     KVEGEQEDMGSAGIPEGLSEEGEESREESEADELGETLPDSTPLGLYLGSPASPKWDL
                     AGEQRPSPQEETGKEGWGPAVLASEGLGAHPSEEEEGGDEEERGHDSELSEEFEDLGT
                     EASLLPGVPGEVAEPPGQVPPLLLEPAAWDPDGESDGFADEEESGEEGEEEDEEGERG
                     PGAGRWGTGPSVGSLPALSGPQRGNLLGSETMDVSVPWDDGLRGAASDAPMTALETES
                     QDSTEASGSEEESDAIPLEREGQVPGPLGTLSAVEDTGLEAGDPLGGVNGQGPSLKEE
                     LEHVNGGVVNGLEQSEGVRQGKPGPPEGDRGSPLEEEEEGGALKTPWAGAPLHLGQGQ
                     LLKFSQREGDGDSWSSGED"
     misc_feature    162..1079
                     /gene="NES"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     misc_feature    192..>2069
                     /gene="NES"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    <1653..>2654
                     /gene="NES"
                     /note="helix-rich Mycoplasma protein; Region:
                     Mplasa_alph_rch; TIGR04523"
                     /db_xref="CDD:275316"
ORIGIN      
        1 ctcagtcgct tcagctgctc ctcgccccgc cccgtcattg tccccatccg tcttctttac
       61 ccttccgtcc taaaagcttt gagagctact ggcttctccc ggtgcttcgc ctctctccac
      121 cttcggtgga tcagacgggc aggatggagg gctgcctggg ggaggaatct tttcagatgt
      181 gggagctcaa ccggcgcctg gaggcctacc tggcccgggt caaggcgcta gaggagcaga
      241 atgagctgct cagcgcggag ctcgggggtc tccgggcaca ggccggggac gcctcctgga
      301 gggcccgtgc cgacgacgag ctggcggccc tgcgggccct cgtcgaccag cgctggcggg
      361 agaagcgcgc ggccgaggtg gcgcgcgaca acctggaaga agaggtggag ggcgtggcga
      421 gccggtgcca gcagctgcgg ctggcccggg agcggaccgc ggaggaaaca gcccgcagcc
      481 ggcgcgcggt cgaggccgaa aagtgcgccc aggcctggct gagcacccag gcggcggagc
      541 tggagcgcga gctggaggct ctgcgcgcgg cgcacgagga ggaacgcgcg ggcctgaacg
      601 ctcaggctgc ctgcgccccc cgcggccccg ctccgccccg cgggcccccc gtgccggccc
      661 ccgaggttga ggagctggcg ctgcggctgg gcgaggcgtg gcgcggggca gtgcgcggct
      721 accaggagcg cgtggcgcac atggagacgt cgctgggcca ggcccgcgag cggctgggcc
      781 acgcgttgca gggcgcccgc gagggtcggc tgaagctgca gcagctccaa gcggagcgca
      841 gcggcctcca ggagcgcagg gccgcgctgg agcagaggtt ggagggccgc tggcaggagc
      901 ggctgcgggc tactgagcag ttccagctgt ccgtggaggc cctggagcag gagaaacagg
      961 gcctacagag ccagatcgcc caggtcctgg aaggtcggca gcagctggca cacctcaaga
     1021 tgtccctcag cttggaggtg gccacataca gaaccctcct agaggcagag aactcccggc
     1081 tgcagacacc tggcagcggt tccaaggctt ccctcagctt cctggaccct aagctggagc
     1141 tgcatttccc tgggacccca gaaggccggc gtctgggacc tttgctttct gtgctgagcc
     1201 ctactcccct ctcctcgtct ttgcctgata cccttgaaac acctgtgcca ggcttcctga
     1261 agagccagga gctccttcag ggccatgccc ccacctcggc cagcaccccc attccgccca
     1321 cacctcaggc tccccgccct gccacagatg ccaagatcag agcccaggat gcccctctct
     1381 ccctgcccca gccacaggtt ggggtgcaac aggttccaga agcggtgtgg gctgaagcca
     1441 aggtggccat ccctgccagc gtcctgccag gaccagagga gcctgggggc aaggaacaag
     1501 agcccagtcc aggccagtcc tctgaagatc atgcctccct ggctccagcc ctcagccctg
     1561 accatcccag tttagaggcc aaagatggag aacccagtgg gtctagcaga ttccaggagg
     1621 aaggggaagg acaaatctgg gggctggcag agaaagaaac agctgtagag gtcaaagtaa
     1681 taagcagctt gcagcaggaa acatggcaag aagaggggga tctggacatg aaagaaatcc
     1741 aagactccct gggtcctttg gaaaaagaaa ctctgaagtc tctggaagag gagattcagg
     1801 agccactgat ttctctggaa aaacagcgcc atgagacaat gagatctcta gagaaggaga
     1861 atcaggaatc tctgaggtct ttggaagaag agaacttaga aacactaaaa actctagaaa
     1921 aggagaatca agagttattg cagtctttag aaggaaagga gatggaggta atgagacctc
     1981 tagaaaaaga gactctagaa gtacttaagc ctataggaag agaggaccca cagacattgc
     2041 aatcaccaga aaaggagagt caagaaataa tgaggtctct tcaaggaaat gtaggagcat
     2101 ttttatctcc aggaaaggaa aatcaagaat tagtgaggtc tctagaagag gagaactttg
     2161 agtcattgag agctctagaa aaggaaaggc aagagccact gagatgtcaa gacgtagaga
     2221 accaggaaac attgagaccc ttagcaaaag agaatctaga gccactgaga tctctagaag
     2281 aaaaagacca ggagacatca agacctctag gaaaagagaa tcagccactg aggtctctag
     2341 aaaaagaaga ccagatgaca ttgagccctc tagaaaaggt gaaaccagag gcactaaagt
     2401 ctcttggaaa agaccaggag atagatagac ttctcgaaaa agagaatcaa gacttattaa
     2461 ggtccctaaa tgaagagagt gtagaggcag tgagatcttt aggaacagag actctagaac
     2521 cactaaagcc tacaggagaa gaaaacctgg aaatgttgaa acctctagaa aaggaaagtc
     2581 aagaaccact ggggtctgtg gaagggaacc aagagacact gagaccccta gaaaaggaga
     2641 ctcagaaatc actgagctct ctgggagggc agagtgtaga ggatatgaga tctccagagg
     2701 aggtagacaa gggaagtcaa aggtatctgg aagaggaaga gaacgtggag aagggagaga
     2761 attcagagct accaaggtcc ctggaggagg agggacagga gctgccactc tctgcacatc
     2821 tgcagaagtg ggaagatacg gtgcaggggg ctcaagaact ggatcaggaa acgccccctg
     2881 ggagacctga actggacagt gcggacgagg cagagatgga acctagggaa tgggagagct
     2941 ttgctgggaa gggggaggct gtagaccaag gggagctgca gctgacggcc acaggcaagg
     3001 cctggagccc aggtgagggg cagctaggga gctccgagcc caaagagcag agggtctcag
     3061 ctgagggagc cagtggggtg ggaggcactg agggcctcca ggaccctgaa gagcagtcag
     3121 accaggtggg gaccccaggc ctcccagctc gccagggaat gtcagaggtg ctagagccag
     3181 tgttggaagg tgaggatgtg gcccccagcg atggccgagc ctccccagag gtcgccttgg
     3241 gcttagagac tgcaggagcg gaacagggac cggagcagga ggcggtaggg ctggaggacc
     3301 caggcggcct ggccagagag gaggtgatgg agccacccct gggggaggaa ggtttggagg
     3361 caaagagggt acagggcttg gaagggccca gaaaggagct ggaggaggca gctgctctgg
     3421 agccagagct ctccacactg cccaggaaga gcagagaccc gctggacact gccaggggct
     3481 gggaggagtc tgagcctgat gcccctgagg aagcagagga gatgttccct gctgagacct
     3541 cgtgctgcga tggaagtgat acacctcaac ccaggccctt gagctccgag ggagcaaagg
     3601 aggatgccga agcagtgctg gggccaccca gcccacggcc cactgagtcc tgctcaccca
     3661 tcccaatccc tgaagatgcc cctgggcccc agcccctggc tgagggtagc caagaggcta
     3721 gctgggggct ggcaggcagg gctgaggtcc tgggaaaggt ggagggtgag caggaggata
     3781 tgggctccgc gggaatccct gaaggcctct cggaggaggg ggaggagagc agagaagaga
     3841 gtgaggctga tgagctaggg gagacccttc ccgactccac tcccctgggc ctctacctcg
     3901 ggtcccctgc ttcccccaag tgggacctgg ctggagagca gaggccctcc cctcaagagg
     3961 agactggaaa ggaaggctgg ggccctgcag tcctggcctc tgagggcctt ggggcccatc
     4021 cctcagagga ggaggaggga ggagatgagg aggaacgtgg ccatgactct gagctgtcgg
     4081 aagaatttga ggacttgggg actgaggctt ctcttcttcc tggggtccct ggggaggtgg
     4141 cagaacctcc aggccaggtg cccccgttgc tactggagcc tgcagcctgg gatccggatg
     4201 gggaatctga tggatttgca gatgaggaag agagcgggga ggagggagag gaagaagatg
     4261 aagaagggga gagggggcca ggggcagggc ggtgggggac agggccctct gtgggcagcc
     4321 tcccggccct gagtggccct cagagaggga acctcctggg gtctgagacc atggatgtca
     4381 gtgtcccctg ggatgatggc ttgaggggtg cggcatctga tgcccccatg actgccctgg
     4441 agactgagtc ccaggacagc acggaggcct caggatcaga ggaggagtct gatgctattc
     4501 ccctggagag ggagggccaa gtccctggcc ctctggggac cctcagtgcg gtggaggaca
     4561 cgggcttgga ggcaggggac ccccttggtg gtgtcaatgg ccagggcccc agcctgaagg
     4621 aagagttgga gcatgtgaat gggggtgtgg tgaacgggct ggagcagtct gagggagtaa
     4681 ggcaggggaa accggggccc cctgagggtg accgagggag ccccttggag gaggaggagg
     4741 aggggggtgc cctgaagacc ccttgggcag gggctccgct tcacctgggc caaggccagc
     4801 tcctgaagtt cagtcagcga gagggagatg gagactcctg gtcctcaggg gaggactaga
     4861 ggaagagcac cccctcctgc actgaggtct tgggcagggg ggtatcccca agccccctcc
     4921 ctgctcggag gcagcaccct taacttatct cttgacccgt ggtttctgtc cgagaggcct
     4981 ggctagccga ggtgaaatgg gtgtggcaaa gggacccgtt ccaagaatgc aggctctggg
     5041 aatagaaacc agccccttgg accctgctaa gggggacatc cggcctgcac tgtcccacga
     5101 ggctgaagcc aactgaatct ctgtaggact aggccccccc ttttctttgc actccctttc
     5161 cttcccatcc catcagctgg aaaaggccag gggcccagtg gctcctccat ggggaggggg
     5221 ccgtggtggt ccatgcgcca gggctcacca gctctgccct tcttcactgc accctcatgg
     5281 gatgtctggc tgatggctac tggtggtgag ggggtgcttc tatgtcctga ccccccatat
     5341 gcctgccatg ttgtagcccc atctggcttt tccctgcctg aataaagtaa tacctccgcc
     5401 tataaa
//
LOCUS       XM_032649651            4597 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X1, mRNA.
ACCESSION   XM_032649651
VERSION     XM_032649651.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4597
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4597
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 19 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             430..3555
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X1"
                     /protein_id="XP_032505542.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKC
                     ANHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFC
                     PPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQE
                     PFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGR
                     LDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPGSQLFASLQAPERPGGA
                     HGHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSNRNGPGPFYSKGPISEE
                     GLGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRR
                     HPQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRH
                     PPSPPLRCQDR"
     misc_feature    505..717
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2038..2175
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <2857..>3384
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 gccccccgcc cctccgcgcc cttccccgcc cagcgatcca caactttcgg ccactccgcc
       61 gctctcgcag tcggcctggg actccacgca gggacccccg cccttttctc ctccaggccc
      121 accccggcgg tccccacccc aggcggacgg cgagataggg tcccgaggca ggtcttgtcc
      181 atgtcaccgc agcctggagc tccgcggaca gatccaggcc caggctccgt atcatgagca
      241 ccgggatccc ccaggacact ctctgggctc ctcaggccca ggggcccaag ggccctgtcg
      301 ccctgcccct ggctcacctg agtttctcag gccccaggat gccatagagg cctgagactt
      361 ggccctccag gtttgtggct gcagtgcccc tcacctgctc cacacctggc cctgtcacag
      421 gcctcagcaa tgtcaccacc tctgcgggcc ctctttctcc tggccctggg cctggggctg
      481 gctggaaccc tcaaccccaa ggaccccaac acctgcagct tctgggaaag cttcaccacc
      541 acgaccaagg agtcacactc ccgccccttc agcctgctcc cctcggagcc ctgtgaccgg
      601 ccctgggaca gcccgcacac ctgcccccgg cccacggttg tctaccggac cgtgtaccgc
      661 caggtggtga agacggagta ccgaatgcgc ctgcagtgct gccagggctt ctatgagagc
      721 agcggagcct gtgtcccgct ttgtgctcgg gagtgtgttc atggccgctg cgtggcaccc
      781 aatcagtgcc agtgtgtgca agactggcgg ggcgacgact gctccagtgc ttgtgccctg
      841 ggagtttggg ggccacagtg tgacaagccc tgcaactgcg gcaacagcag ctcctgtgac
      901 cccaagagtg gggcatgttc ctgtccctct gggctgcagc ctccacactg ctttcggccc
      961 tgctcccctg gccgctatgg ccctgcctgc cagttcagct gccagtgcca tggggcaccc
     1021 tgtgacccac agaccggagc ctgcctctgc cccccagaga gaactgggcc cagctgcgag
     1081 gtgttctgtt cacaggacag tgttggcttc ttctgcccca gcacccctcc ttgccaaaat
     1141 gggggtgtct tccaggcctc tcggggctcc tgcagctgcc cacctggctg gatgggcacc
     1201 atctgttccc tgccctgccc cgagggctcc tatggaccca actgctccca ggaatgtcgc
     1261 tgtcacaacg gaggcctctg cgaccggttc accgggcagt gtcgctgcgc tccgggatac
     1321 acaggggacc ggtgccgtga ggagtgcccc gtgggccgct tcgggcagga ctgtgctgag
     1381 acttgtgact gcgccacggg cgcccgctgc ttcccggcca acggcgcgtg tctgtgcgaa
     1441 cacggcttca ctggggaccg ctgcgccgaa cgtctctgcc ccgacggcct ctacggcctc
     1501 agctgccaga tgccctgcac ctgcgacccg gaacacagtc tcaactgcca cccgatgagc
     1561 ggggagtgct cttgcctgcc gggctgggcg ggcctccact gcaacgagag ctgcccgcag
     1621 gacacgcacg ggcccggctg tcaggagcac tgcctctgcc tgcacggcgg cgtctgccag
     1681 cccgacagcg gcctctgccg gtgcgcgccc ggctacacgg gcccgcactg cgctagcctc
     1741 tgtccccctg acacctatgg agtcaactgc tccgcacgct gctcctgcga aaatgccatc
     1801 gcctgctcgc ccatcgacgg cacctgcgtc tgcaaggaag gttggcagca tggtaactgc
     1861 tccgtgccct gcccgcctgg aacctggggc ttcggttgca atgccagctg ccagtgtgcc
     1921 cacgaggcag cctgcagccc ccaaaccgga gcctgtacct gtacccctgg gtggcacggg
     1981 acccactgcc agctcccctg cctgaagggg atgtttggtg aaggctgtgc cagccgctgt
     2041 gactgtgacc attctgatgg ctgtgaccct gttcacggac actgccagtg ccaagctggc
     2101 tggacaggta cccgctgcca cctgccctgc cctgagggct tctggggagc caactgtagc
     2161 aacacctgca cctgcaagaa tgggggcacc tgcatccctg agaatggcaa ctgtgtgtgt
     2221 gcacctggat tccgaggccc ctcctgccag agatcctgtc agcccggccg ctacggcaaa
     2281 cgctgtgtgc cctgcaagtg tgctaaccac tcctcctgcc acccttcgaa tgggacctgc
     2341 tactgcatgg ctggctggac aggccctgac tgctcccaac cgtgccctct aggacactgg
     2401 ggggccaact gtgcccagct ctgccagtgt cgccatggcg ggacctgcca cccccagcat
     2461 gggagttgtt tctgtccccc aggccggacc ggacatctct gcttggaagg ctgctctcca
     2521 ggggtgttcg gtgccaattg ttcccaacca tgccagtgcg gtcctggaga gaggtgccac
     2581 ccagagactg gggcctgtgt gtgtccccca gggcacagtg gtgccccctg caggattgga
     2641 agccaggagc cattcaccat gatgcctacc tctccagtgg cctataactc actcggggca
     2701 gtgattggca ttgcagtgct gggatccctg gtggtggccc tggtggcgct gttcattggc
     2761 taccgccatt ggcaaaaagg caaagtgcac catcacctgg cagtggccta cagcagcggg
     2821 cggctggacg gctctgagta cgttatgcca gatgtccctc cgagctacag tcactactac
     2881 tccaacccca gctaccacac cctgtctcag tgctcaccta accccccgct ccctaacaag
     2941 gtcccaggca gtcagctctt tgccagcctc caggcccctg agcggccagg tggagcccac
     3001 gggcatgata acaaccacgc cacactgcct gctgactgga agcaccgccg gcagccccct
     3061 ccagggcctc tggacagggc taacagccac ctggaccgaa gctacagctg tagctacagc
     3121 aacaggaatg gcccaggccc cttctacagt aaagggccca tctctgaaga ggggctgggg
     3181 gccagtgtgg cttccctgag cagtgagaac ccctacgcca ccatccggga cctgcccagc
     3241 ctgctaggga gcccccggga gagcagctac atggagatga aaggccctcc ctcagggtct
     3301 ccccccaggc agccgcctca gctccgggac agccagaggc ggcgacaccc ccagccagag
     3361 agagacagtg gcacctatga gcagcccagc cccctgaccc atgaccgaga ctctgtgggc
     3421 tcccggccgc ctctgcctcc gggcctgcct cctggccact atgactcacc caagaacagc
     3481 cacatacctg gacactatga cttgcctcca gtacggcatc ccccgtcacc cccacttcgg
     3541 tgccaggacc gttgaggagc caagatggtg tgcagaggtc agcacaccgg ttctttgctg
     3601 ctcaaggcta aggacagagc ccgctgtacc ctgccaggag cagggagagg actggccggc
     3661 cgtgaacatg aacatgttta atagaggaag tgaatggaga ggagatggga gcctggctcc
     3721 caggttctac catgggaaac actggtcagc aggaaacctg tgttcctttt ccccaaccca
     3781 ttgctcccca aggcccccag ggccctgtat acataaactg gtgggttgaa tgttgctgga
     3841 taactctgat ttcagattgc tgtaagaagt gtatattggg taacttttct gtgcactccc
     3901 gggctaggct ctgtgtgtgc gtgcatgcgt gttttcagag gcgtaccagg cactgatcct
     3961 gtcctggggc actcactata tagtggagag gcagcccaaa cccagttaac tctagaaata
     4021 gcgtgactgg cctccctgca ttcatttggt actcccgcca accaaccgct tcaaaataca
     4081 agctggttag gttacccctg cctgaaagtc tccgtgggtg ccccatggcc cttgggctac
     4141 agtcaaaatt gtccaaggcc ttaaaggctt tgctggcctg gcctgcctgt ctcttcagcc
     4201 tcactctgaa ctgtgttccc tgtcactctg ccccagtcac actggcctct acgtcctcct
     4261 atcagccaca cgtcttccta ctacagggac ttggcacatc tggaatgctc ttcctccccc
     4321 actcaccggt taactcctgc ttgtccctca caccccgtgt tctctttcac agcactggtt
     4381 actgatgtgt tcatgtacca gttacctgca gaaggcctac agggtgccag gcacctctgt
     4441 aatgtgtttt ttttttttta gtgtgattat ttgattaatc tctgcccccc ccaccagact
     4501 cttaagttcc ctgaaagcag gaatcctgtg tttatgttca acactggctc cccttggcac
     4561 atggtaggca ctcaataaat gttcccccga aggctga
//
LOCUS       XM_032649659            4613 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X2, mRNA.
ACCESSION   XM_032649659
VERSION     XM_032649659.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4613
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4613
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 19 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             446..3571
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X1"
                     /protein_id="XP_032505550.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKC
                     ANHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFC
                     PPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQE
                     PFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGR
                     LDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPGSQLFASLQAPERPGGA
                     HGHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSNRNGPGPFYSKGPISEE
                     GLGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRR
                     HPQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRH
                     PPSPPLRCQDR"
     misc_feature    521..733
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2054..2191
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <2873..>3400
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 gccccccgcc cctccgcgcc cttccccgcc cagcgatcca caactttcgg ccactccgcc
       61 gctctcgcag tcggcctggg actccacgca gggacccccg cccttttctc ctccaggccc
      121 accccggcgg tccccacccc aggcggacgg cgagataggg tcccgaggca gggccttcct
      181 gctgcaggtc ttgtccatgt caccgcagcc tggagctccg cggacagatc caggcccagg
      241 ctccgtatca tgagcaccgg gatcccccag gacactctct gggctcctca ggcccagggg
      301 cccaagggcc ctgtcgccct gcccctggct cacctgagtt tctcaggccc caggatgcca
      361 tagaggcctg agacttggcc ctccaggttt gtggctgcag tgcccctcac ctgctccaca
      421 cctggccctg tcacaggcct cagcaatgtc accacctctg cgggccctct ttctcctggc
      481 cctgggcctg gggctggctg gaaccctcaa ccccaaggac cccaacacct gcagcttctg
      541 ggaaagcttc accaccacga ccaaggagtc acactcccgc cccttcagcc tgctcccctc
      601 ggagccctgt gaccggccct gggacagccc gcacacctgc ccccggccca cggttgtcta
      661 ccggaccgtg taccgccagg tggtgaagac ggagtaccga atgcgcctgc agtgctgcca
      721 gggcttctat gagagcagcg gagcctgtgt cccgctttgt gctcgggagt gtgttcatgg
      781 ccgctgcgtg gcacccaatc agtgccagtg tgtgcaagac tggcggggcg acgactgctc
      841 cagtgcttgt gccctgggag tttgggggcc acagtgtgac aagccctgca actgcggcaa
      901 cagcagctcc tgtgacccca agagtggggc atgttcctgt ccctctgggc tgcagcctcc
      961 acactgcttt cggccctgct cccctggccg ctatggccct gcctgccagt tcagctgcca
     1021 gtgccatggg gcaccctgtg acccacagac cggagcctgc ctctgccccc cagagagaac
     1081 tgggcccagc tgcgaggtgt tctgttcaca ggacagtgtt ggcttcttct gccccagcac
     1141 ccctccttgc caaaatgggg gtgtcttcca ggcctctcgg ggctcctgca gctgcccacc
     1201 tggctggatg ggcaccatct gttccctgcc ctgccccgag ggctcctatg gacccaactg
     1261 ctcccaggaa tgtcgctgtc acaacggagg cctctgcgac cggttcaccg ggcagtgtcg
     1321 ctgcgctccg ggatacacag gggaccggtg ccgtgaggag tgccccgtgg gccgcttcgg
     1381 gcaggactgt gctgagactt gtgactgcgc cacgggcgcc cgctgcttcc cggccaacgg
     1441 cgcgtgtctg tgcgaacacg gcttcactgg ggaccgctgc gccgaacgtc tctgccccga
     1501 cggcctctac ggcctcagct gccagatgcc ctgcacctgc gacccggaac acagtctcaa
     1561 ctgccacccg atgagcgggg agtgctcttg cctgccgggc tgggcgggcc tccactgcaa
     1621 cgagagctgc ccgcaggaca cgcacgggcc cggctgtcag gagcactgcc tctgcctgca
     1681 cggcggcgtc tgccagcccg acagcggcct ctgccggtgc gcgcccggct acacgggccc
     1741 gcactgcgct agcctctgtc cccctgacac ctatggagtc aactgctccg cacgctgctc
     1801 ctgcgaaaat gccatcgcct gctcgcccat cgacggcacc tgcgtctgca aggaaggttg
     1861 gcagcatggt aactgctccg tgccctgccc gcctggaacc tggggcttcg gttgcaatgc
     1921 cagctgccag tgtgcccacg aggcagcctg cagcccccaa accggagcct gtacctgtac
     1981 ccctgggtgg cacgggaccc actgccagct cccctgcctg aaggggatgt ttggtgaagg
     2041 ctgtgccagc cgctgtgact gtgaccattc tgatggctgt gaccctgttc acggacactg
     2101 ccagtgccaa gctggctgga caggtacccg ctgccacctg ccctgccctg agggcttctg
     2161 gggagccaac tgtagcaaca cctgcacctg caagaatggg ggcacctgca tccctgagaa
     2221 tggcaactgt gtgtgtgcac ctggattccg aggcccctcc tgccagagat cctgtcagcc
     2281 cggccgctac ggcaaacgct gtgtgccctg caagtgtgct aaccactcct cctgccaccc
     2341 ttcgaatggg acctgctact gcatggctgg ctggacaggc cctgactgct cccaaccgtg
     2401 ccctctagga cactgggggg ccaactgtgc ccagctctgc cagtgtcgcc atggcgggac
     2461 ctgccacccc cagcatggga gttgtttctg tcccccaggc cggaccggac atctctgctt
     2521 ggaaggctgc tctccagggg tgttcggtgc caattgttcc caaccatgcc agtgcggtcc
     2581 tggagagagg tgccacccag agactggggc ctgtgtgtgt cccccagggc acagtggtgc
     2641 cccctgcagg attggaagcc aggagccatt caccatgatg cctacctctc cagtggccta
     2701 taactcactc ggggcagtga ttggcattgc agtgctggga tccctggtgg tggccctggt
     2761 ggcgctgttc attggctacc gccattggca aaaaggcaaa gtgcaccatc acctggcagt
     2821 ggcctacagc agcgggcggc tggacggctc tgagtacgtt atgccagatg tccctccgag
     2881 ctacagtcac tactactcca accccagcta ccacaccctg tctcagtgct cacctaaccc
     2941 cccgctccct aacaaggtcc caggcagtca gctctttgcc agcctccagg cccctgagcg
     3001 gccaggtgga gcccacgggc atgataacaa ccacgccaca ctgcctgctg actggaagca
     3061 ccgccggcag ccccctccag ggcctctgga cagggctaac agccacctgg accgaagcta
     3121 cagctgtagc tacagcaaca ggaatggccc aggccccttc tacagtaaag ggcccatctc
     3181 tgaagagggg ctgggggcca gtgtggcttc cctgagcagt gagaacccct acgccaccat
     3241 ccgggacctg cccagcctgc tagggagccc ccgggagagc agctacatgg agatgaaagg
     3301 ccctccctca gggtctcccc ccaggcagcc gcctcagctc cgggacagcc agaggcggcg
     3361 acacccccag ccagagagag acagtggcac ctatgagcag cccagccccc tgacccatga
     3421 ccgagactct gtgggctccc ggccgcctct gcctccgggc ctgcctcctg gccactatga
     3481 ctcacccaag aacagccaca tacctggaca ctatgacttg cctccagtac ggcatccccc
     3541 gtcaccccca cttcggtgcc aggaccgttg aggagccaag atggtgtgca gaggtcagca
     3601 caccggttct ttgctgctca aggctaagga cagagcccgc tgtaccctgc caggagcagg
     3661 gagaggactg gccggccgtg aacatgaaca tgtttaatag aggaagtgaa tggagaggag
     3721 atgggagcct ggctcccagg ttctaccatg ggaaacactg gtcagcagga aacctgtgtt
     3781 ccttttcccc aacccattgc tccccaaggc ccccagggcc ctgtatacat aaactggtgg
     3841 gttgaatgtt gctggataac tctgatttca gattgctgta agaagtgtat attgggtaac
     3901 ttttctgtgc actcccgggc taggctctgt gtgtgcgtgc atgcgtgttt tcagaggcgt
     3961 accaggcact gatcctgtcc tggggcactc actatatagt ggagaggcag cccaaaccca
     4021 gttaactcta gaaatagcgt gactggcctc cctgcattca tttggtactc ccgccaacca
     4081 accgcttcaa aatacaagct ggttaggtta cccctgcctg aaagtctccg tgggtgcccc
     4141 atggcccttg ggctacagtc aaaattgtcc aaggccttaa aggctttgct ggcctggcct
     4201 gcctgtctct tcagcctcac tctgaactgt gttccctgtc actctgcccc agtcacactg
     4261 gcctctacgt cctcctatca gccacacgtc ttcctactac agggacttgg cacatctgga
     4321 atgctcttcc tcccccactc accggttaac tcctgcttgt ccctcacacc ccgtgttctc
     4381 tttcacagca ctggttactg atgtgttcat gtaccagtta cctgcagaag gcctacaggg
     4441 tgccaggcac ctctgtaatg tgtttttttt tttttagtgt gattatttga ttaatctctg
     4501 ccccccccac cagactctta agttccctga aagcaggaat cctgtgttta tgttcaacac
     4561 tggctcccct tggcacatgg taggcactca ataaatgttc ccccgaaggc tga
//
LOCUS       XM_032649668            4764 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X3, mRNA.
ACCESSION   XM_032649668
VERSION     XM_032649668.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4764
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4764
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 19 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             597..3722
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X1"
                     /protein_id="XP_032505559.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKC
                     ANHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFC
                     PPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQE
                     PFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGR
                     LDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPGSQLFASLQAPERPGGA
                     HGHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSNRNGPGPFYSKGPISEE
                     GLGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRR
                     HPQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRH
                     PPSPPLRCQDR"
     misc_feature    672..884
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2205..2342
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <3024..>3551
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 cctcagggtg ctttccggcg gccagagaag cggagagggc ttttcccggt gctcctctcc
       61 cagtctggga tgctgtcggt cggtccccgg gttgtatctt taataagata agaaagctga
      121 ggccggagag gcggagtacc ccaaggccgc acagctggtg aagagtcgag gagggactcg
      181 ggcccggggc ccctgctctt ctcccctgct catcccctct ctgcgcccga tccaggctgt
      241 cgggtcggcc ccgccgctcg gcctcaggcc caccccggcg gtccccaccc caggcggacg
      301 gcgagatagg gtcccgaggc agggccttcc tgctgcaggt cttgtccatg tcaccgcagc
      361 ctggagctcc gcggacagat ccaggcccag gctccgtatc atgagcaccg ggatccccca
      421 ggacactctc tgggctcctc aggcccaggg gcccaagggc cctgtcgccc tgcccctggc
      481 tcacctgagt ttctcaggcc ccaggatgcc atagaggcct gagacttggc cctccaggtt
      541 tgtggctgca gtgcccctca cctgctccac acctggccct gtcacaggcc tcagcaatgt
      601 caccacctct gcgggccctc tttctcctgg ccctgggcct ggggctggct ggaaccctca
      661 accccaagga ccccaacacc tgcagcttct gggaaagctt caccaccacg accaaggagt
      721 cacactcccg ccccttcagc ctgctcccct cggagccctg tgaccggccc tgggacagcc
      781 cgcacacctg cccccggccc acggttgtct accggaccgt gtaccgccag gtggtgaaga
      841 cggagtaccg aatgcgcctg cagtgctgcc agggcttcta tgagagcagc ggagcctgtg
      901 tcccgctttg tgctcgggag tgtgttcatg gccgctgcgt ggcacccaat cagtgccagt
      961 gtgtgcaaga ctggcggggc gacgactgct ccagtgcttg tgccctggga gtttgggggc
     1021 cacagtgtga caagccctgc aactgcggca acagcagctc ctgtgacccc aagagtgggg
     1081 catgttcctg tccctctggg ctgcagcctc cacactgctt tcggccctgc tcccctggcc
     1141 gctatggccc tgcctgccag ttcagctgcc agtgccatgg ggcaccctgt gacccacaga
     1201 ccggagcctg cctctgcccc ccagagagaa ctgggcccag ctgcgaggtg ttctgttcac
     1261 aggacagtgt tggcttcttc tgccccagca cccctccttg ccaaaatggg ggtgtcttcc
     1321 aggcctctcg gggctcctgc agctgcccac ctggctggat gggcaccatc tgttccctgc
     1381 cctgccccga gggctcctat ggacccaact gctcccagga atgtcgctgt cacaacggag
     1441 gcctctgcga ccggttcacc gggcagtgtc gctgcgctcc gggatacaca ggggaccggt
     1501 gccgtgagga gtgccccgtg ggccgcttcg ggcaggactg tgctgagact tgtgactgcg
     1561 ccacgggcgc ccgctgcttc ccggccaacg gcgcgtgtct gtgcgaacac ggcttcactg
     1621 gggaccgctg cgccgaacgt ctctgccccg acggcctcta cggcctcagc tgccagatgc
     1681 cctgcacctg cgacccggaa cacagtctca actgccaccc gatgagcggg gagtgctctt
     1741 gcctgccggg ctgggcgggc ctccactgca acgagagctg cccgcaggac acgcacgggc
     1801 ccggctgtca ggagcactgc ctctgcctgc acggcggcgt ctgccagccc gacagcggcc
     1861 tctgccggtg cgcgcccggc tacacgggcc cgcactgcgc tagcctctgt ccccctgaca
     1921 cctatggagt caactgctcc gcacgctgct cctgcgaaaa tgccatcgcc tgctcgccca
     1981 tcgacggcac ctgcgtctgc aaggaaggtt ggcagcatgg taactgctcc gtgccctgcc
     2041 cgcctggaac ctggggcttc ggttgcaatg ccagctgcca gtgtgcccac gaggcagcct
     2101 gcagccccca aaccggagcc tgtacctgta cccctgggtg gcacgggacc cactgccagc
     2161 tcccctgcct gaaggggatg tttggtgaag gctgtgccag ccgctgtgac tgtgaccatt
     2221 ctgatggctg tgaccctgtt cacggacact gccagtgcca agctggctgg acaggtaccc
     2281 gctgccacct gccctgccct gagggcttct ggggagccaa ctgtagcaac acctgcacct
     2341 gcaagaatgg gggcacctgc atccctgaga atggcaactg tgtgtgtgca cctggattcc
     2401 gaggcccctc ctgccagaga tcctgtcagc ccggccgcta cggcaaacgc tgtgtgccct
     2461 gcaagtgtgc taaccactcc tcctgccacc cttcgaatgg gacctgctac tgcatggctg
     2521 gctggacagg ccctgactgc tcccaaccgt gccctctagg acactggggg gccaactgtg
     2581 cccagctctg ccagtgtcgc catggcggga cctgccaccc ccagcatggg agttgtttct
     2641 gtcccccagg ccggaccgga catctctgct tggaaggctg ctctccaggg gtgttcggtg
     2701 ccaattgttc ccaaccatgc cagtgcggtc ctggagagag gtgccaccca gagactgggg
     2761 cctgtgtgtg tcccccaggg cacagtggtg ccccctgcag gattggaagc caggagccat
     2821 tcaccatgat gcctacctct ccagtggcct ataactcact cggggcagtg attggcattg
     2881 cagtgctggg atccctggtg gtggccctgg tggcgctgtt cattggctac cgccattggc
     2941 aaaaaggcaa agtgcaccat cacctggcag tggcctacag cagcgggcgg ctggacggct
     3001 ctgagtacgt tatgccagat gtccctccga gctacagtca ctactactcc aaccccagct
     3061 accacaccct gtctcagtgc tcacctaacc ccccgctccc taacaaggtc ccaggcagtc
     3121 agctctttgc cagcctccag gcccctgagc ggccaggtgg agcccacggg catgataaca
     3181 accacgccac actgcctgct gactggaagc accgccggca gccccctcca gggcctctgg
     3241 acagggctaa cagccacctg gaccgaagct acagctgtag ctacagcaac aggaatggcc
     3301 caggcccctt ctacagtaaa gggcccatct ctgaagaggg gctgggggcc agtgtggctt
     3361 ccctgagcag tgagaacccc tacgccacca tccgggacct gcccagcctg ctagggagcc
     3421 cccgggagag cagctacatg gagatgaaag gccctccctc agggtctccc cccaggcagc
     3481 cgcctcagct ccgggacagc cagaggcggc gacaccccca gccagagaga gacagtggca
     3541 cctatgagca gcccagcccc ctgacccatg accgagactc tgtgggctcc cggccgcctc
     3601 tgcctccggg cctgcctcct ggccactatg actcacccaa gaacagccac atacctggac
     3661 actatgactt gcctccagta cggcatcccc cgtcaccccc acttcggtgc caggaccgtt
     3721 gaggagccaa gatggtgtgc agaggtcagc acaccggttc tttgctgctc aaggctaagg
     3781 acagagcccg ctgtaccctg ccaggagcag ggagaggact ggccggccgt gaacatgaac
     3841 atgtttaata gaggaagtga atggagagga gatgggagcc tggctcccag gttctaccat
     3901 gggaaacact ggtcagcagg aaacctgtgt tccttttccc caacccattg ctccccaagg
     3961 cccccagggc cctgtataca taaactggtg ggttgaatgt tgctggataa ctctgatttc
     4021 agattgctgt aagaagtgta tattgggtaa cttttctgtg cactcccggg ctaggctctg
     4081 tgtgtgcgtg catgcgtgtt ttcagaggcg taccaggcac tgatcctgtc ctggggcact
     4141 cactatatag tggagaggca gcccaaaccc agttaactct agaaatagcg tgactggcct
     4201 ccctgcattc atttggtact cccgccaacc aaccgcttca aaatacaagc tggttaggtt
     4261 acccctgcct gaaagtctcc gtgggtgccc catggccctt gggctacagt caaaattgtc
     4321 caaggcctta aaggctttgc tggcctggcc tgcctgtctc ttcagcctca ctctgaactg
     4381 tgttccctgt cactctgccc cagtcacact ggcctctacg tcctcctatc agccacacgt
     4441 cttcctacta cagggacttg gcacatctgg aatgctcttc ctcccccact caccggttaa
     4501 ctcctgcttg tccctcacac cccgtgttct ctttcacagc actggttact gatgtgttca
     4561 tgtaccagtt acctgcagaa ggcctacagg gtgccaggca cctctgtaat gtgttttttt
     4621 ttttttagtg tgattatttg attaatctct gcccccccca ccagactctt aagttccctg
     4681 aaagcaggaa tcctgtgttt atgttcaaca ctggctcccc ttggcacatg gtaggcactc
     4741 aataaatgtt cccccgaagg ctga
//
LOCUS       XM_032649678            4748 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X4, mRNA.
ACCESSION   XM_032649678
VERSION     XM_032649678.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4748
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4748
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 19 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             581..3706
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X1"
                     /protein_id="XP_032505569.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKC
                     ANHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFC
                     PPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQE
                     PFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGR
                     LDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPGSQLFASLQAPERPGGA
                     HGHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSNRNGPGPFYSKGPISEE
                     GLGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRR
                     HPQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRH
                     PPSPPLRCQDR"
     misc_feature    656..868
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2189..2326
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <3008..>3535
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 cctcagggtg ctttccggcg gccagagaag cggagagggc ttttcccggt gctcctctcc
       61 cagtctggga tgctgtcggt cggtccccgg gttgtatctt taataagata agaaagctga
      121 ggccggagag gcggagtacc ccaaggccgc acagctggtg aagagtcgag gagggactcg
      181 ggcccggggc ccctgctctt ctcccctgct catcccctct ctgcgcccga tccaggctgt
      241 cgggtcggcc ccgccgctcg gcctcaggcc caccccggcg gtccccaccc caggcggacg
      301 gcgagatagg gtcccgaggc aggtcttgtc catgtcaccg cagcctggag ctccgcggac
      361 agatccaggc ccaggctccg tatcatgagc accgggatcc cccaggacac tctctgggct
      421 cctcaggccc aggggcccaa gggccctgtc gccctgcccc tggctcacct gagtttctca
      481 ggccccagga tgccatagag gcctgagact tggccctcca ggtttgtggc tgcagtgccc
      541 ctcacctgct ccacacctgg ccctgtcaca ggcctcagca atgtcaccac ctctgcgggc
      601 cctctttctc ctggccctgg gcctggggct ggctggaacc ctcaacccca aggaccccaa
      661 cacctgcagc ttctgggaaa gcttcaccac cacgaccaag gagtcacact cccgcccctt
      721 cagcctgctc ccctcggagc cctgtgaccg gccctgggac agcccgcaca cctgcccccg
      781 gcccacggtt gtctaccgga ccgtgtaccg ccaggtggtg aagacggagt accgaatgcg
      841 cctgcagtgc tgccagggct tctatgagag cagcggagcc tgtgtcccgc tttgtgctcg
      901 ggagtgtgtt catggccgct gcgtggcacc caatcagtgc cagtgtgtgc aagactggcg
      961 gggcgacgac tgctccagtg cttgtgccct gggagtttgg gggccacagt gtgacaagcc
     1021 ctgcaactgc ggcaacagca gctcctgtga ccccaagagt ggggcatgtt cctgtccctc
     1081 tgggctgcag cctccacact gctttcggcc ctgctcccct ggccgctatg gccctgcctg
     1141 ccagttcagc tgccagtgcc atggggcacc ctgtgaccca cagaccggag cctgcctctg
     1201 ccccccagag agaactgggc ccagctgcga ggtgttctgt tcacaggaca gtgttggctt
     1261 cttctgcccc agcacccctc cttgccaaaa tgggggtgtc ttccaggcct ctcggggctc
     1321 ctgcagctgc ccacctggct ggatgggcac catctgttcc ctgccctgcc ccgagggctc
     1381 ctatggaccc aactgctccc aggaatgtcg ctgtcacaac ggaggcctct gcgaccggtt
     1441 caccgggcag tgtcgctgcg ctccgggata cacaggggac cggtgccgtg aggagtgccc
     1501 cgtgggccgc ttcgggcagg actgtgctga gacttgtgac tgcgccacgg gcgcccgctg
     1561 cttcccggcc aacggcgcgt gtctgtgcga acacggcttc actggggacc gctgcgccga
     1621 acgtctctgc cccgacggcc tctacggcct cagctgccag atgccctgca cctgcgaccc
     1681 ggaacacagt ctcaactgcc acccgatgag cggggagtgc tcttgcctgc cgggctgggc
     1741 gggcctccac tgcaacgaga gctgcccgca ggacacgcac gggcccggct gtcaggagca
     1801 ctgcctctgc ctgcacggcg gcgtctgcca gcccgacagc ggcctctgcc ggtgcgcgcc
     1861 cggctacacg ggcccgcact gcgctagcct ctgtccccct gacacctatg gagtcaactg
     1921 ctccgcacgc tgctcctgcg aaaatgccat cgcctgctcg cccatcgacg gcacctgcgt
     1981 ctgcaaggaa ggttggcagc atggtaactg ctccgtgccc tgcccgcctg gaacctgggg
     2041 cttcggttgc aatgccagct gccagtgtgc ccacgaggca gcctgcagcc cccaaaccgg
     2101 agcctgtacc tgtacccctg ggtggcacgg gacccactgc cagctcccct gcctgaaggg
     2161 gatgtttggt gaaggctgtg ccagccgctg tgactgtgac cattctgatg gctgtgaccc
     2221 tgttcacgga cactgccagt gccaagctgg ctggacaggt acccgctgcc acctgccctg
     2281 ccctgagggc ttctggggag ccaactgtag caacacctgc acctgcaaga atgggggcac
     2341 ctgcatccct gagaatggca actgtgtgtg tgcacctgga ttccgaggcc cctcctgcca
     2401 gagatcctgt cagcccggcc gctacggcaa acgctgtgtg ccctgcaagt gtgctaacca
     2461 ctcctcctgc cacccttcga atgggacctg ctactgcatg gctggctgga caggccctga
     2521 ctgctcccaa ccgtgccctc taggacactg gggggccaac tgtgcccagc tctgccagtg
     2581 tcgccatggc gggacctgcc acccccagca tgggagttgt ttctgtcccc caggccggac
     2641 cggacatctc tgcttggaag gctgctctcc aggggtgttc ggtgccaatt gttcccaacc
     2701 atgccagtgc ggtcctggag agaggtgcca cccagagact ggggcctgtg tgtgtccccc
     2761 agggcacagt ggtgccccct gcaggattgg aagccaggag ccattcacca tgatgcctac
     2821 ctctccagtg gcctataact cactcggggc agtgattggc attgcagtgc tgggatccct
     2881 ggtggtggcc ctggtggcgc tgttcattgg ctaccgccat tggcaaaaag gcaaagtgca
     2941 ccatcacctg gcagtggcct acagcagcgg gcggctggac ggctctgagt acgttatgcc
     3001 agatgtccct ccgagctaca gtcactacta ctccaacccc agctaccaca ccctgtctca
     3061 gtgctcacct aaccccccgc tccctaacaa ggtcccaggc agtcagctct ttgccagcct
     3121 ccaggcccct gagcggccag gtggagccca cgggcatgat aacaaccacg ccacactgcc
     3181 tgctgactgg aagcaccgcc ggcagccccc tccagggcct ctggacaggg ctaacagcca
     3241 cctggaccga agctacagct gtagctacag caacaggaat ggcccaggcc ccttctacag
     3301 taaagggccc atctctgaag aggggctggg ggccagtgtg gcttccctga gcagtgagaa
     3361 cccctacgcc accatccggg acctgcccag cctgctaggg agcccccggg agagcagcta
     3421 catggagatg aaaggccctc cctcagggtc tccccccagg cagccgcctc agctccggga
     3481 cagccagagg cggcgacacc cccagccaga gagagacagt ggcacctatg agcagcccag
     3541 ccccctgacc catgaccgag actctgtggg ctcccggccg cctctgcctc cgggcctgcc
     3601 tcctggccac tatgactcac ccaagaacag ccacatacct ggacactatg acttgcctcc
     3661 agtacggcat cccccgtcac ccccacttcg gtgccaggac cgttgaggag ccaagatggt
     3721 gtgcagaggt cagcacaccg gttctttgct gctcaaggct aaggacagag cccgctgtac
     3781 cctgccagga gcagggagag gactggccgg ccgtgaacat gaacatgttt aatagaggaa
     3841 gtgaatggag aggagatggg agcctggctc ccaggttcta ccatgggaaa cactggtcag
     3901 caggaaacct gtgttccttt tccccaaccc attgctcccc aaggccccca gggccctgta
     3961 tacataaact ggtgggttga atgttgctgg ataactctga tttcagattg ctgtaagaag
     4021 tgtatattgg gtaacttttc tgtgcactcc cgggctaggc tctgtgtgtg cgtgcatgcg
     4081 tgttttcaga ggcgtaccag gcactgatcc tgtcctgggg cactcactat atagtggaga
     4141 ggcagcccaa acccagttaa ctctagaaat agcgtgactg gcctccctgc attcatttgg
     4201 tactcccgcc aaccaaccgc ttcaaaatac aagctggtta ggttacccct gcctgaaagt
     4261 ctccgtgggt gccccatggc ccttgggcta cagtcaaaat tgtccaaggc cttaaaggct
     4321 ttgctggcct ggcctgcctg tctcttcagc ctcactctga actgtgttcc ctgtcactct
     4381 gccccagtca cactggcctc tacgtcctcc tatcagccac acgtcttcct actacaggga
     4441 cttggcacat ctggaatgct cttcctcccc cactcaccgg ttaactcctg cttgtccctc
     4501 acaccccgtg ttctctttca cagcactggt tactgatgtg ttcatgtacc agttacctgc
     4561 agaaggccta cagggtgcca ggcacctctg taatgtgttt tttttttttt agtgtgatta
     4621 tttgattaat ctctgccccc cccaccagac tcttaagttc cctgaaagca ggaatcctgt
     4681 gtttatgttc aacactggct ccccttggca catggtaggc actcaataaa tgttcccccg
     4741 aaggctga
//
LOCUS       XM_032649686            4531 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X5, mRNA.
ACCESSION   XM_032649686
VERSION     XM_032649686.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4531
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4531
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 19 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             364..3489
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X1"
                     /protein_id="XP_032505577.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKC
                     ANHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFC
                     PPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQE
                     PFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGR
                     LDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPGSQLFASLQAPERPGGA
                     HGHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSNRNGPGPFYSKGPISEE
                     GLGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRR
                     HPQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRH
                     PPSPPLRCQDR"
     misc_feature    439..651
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    1972..2109
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <2791..>3318
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 gccccccgcc cctccgcgcc cttccccgcc cagcgatcca caactttcgg ccactccgcc
       61 gctctcgcag tcggcctggg actccacgca gggacccccg cccttttctc ctccaggccc
      121 accccggcgg tccccacccc aggcggacgg cgagataggg tcccgaggca ggtcttgtcc
      181 atgtcaccgc agcctggagc tccgcggaca gatccaggcc caggctccgt atcatgagca
      241 ccgggatccc ccaggacact ctctgggctc ctcaggccca ggggcccaag ggccctgtcg
      301 ccctgcccct ggctcacctg agtttctcag gccccaggat gccatagagg cctggcctca
      361 gcaatgtcac cacctctgcg ggccctcttt ctcctggccc tgggcctggg gctggctgga
      421 accctcaacc ccaaggaccc caacacctgc agcttctggg aaagcttcac caccacgacc
      481 aaggagtcac actcccgccc cttcagcctg ctcccctcgg agccctgtga ccggccctgg
      541 gacagcccgc acacctgccc ccggcccacg gttgtctacc ggaccgtgta ccgccaggtg
      601 gtgaagacgg agtaccgaat gcgcctgcag tgctgccagg gcttctatga gagcagcgga
      661 gcctgtgtcc cgctttgtgc tcgggagtgt gttcatggcc gctgcgtggc acccaatcag
      721 tgccagtgtg tgcaagactg gcggggcgac gactgctcca gtgcttgtgc cctgggagtt
      781 tgggggccac agtgtgacaa gccctgcaac tgcggcaaca gcagctcctg tgaccccaag
      841 agtggggcat gttcctgtcc ctctgggctg cagcctccac actgctttcg gccctgctcc
      901 cctggccgct atggccctgc ctgccagttc agctgccagt gccatggggc accctgtgac
      961 ccacagaccg gagcctgcct ctgcccccca gagagaactg ggcccagctg cgaggtgttc
     1021 tgttcacagg acagtgttgg cttcttctgc cccagcaccc ctccttgcca aaatgggggt
     1081 gtcttccagg cctctcgggg ctcctgcagc tgcccacctg gctggatggg caccatctgt
     1141 tccctgccct gccccgaggg ctcctatgga cccaactgct cccaggaatg tcgctgtcac
     1201 aacggaggcc tctgcgaccg gttcaccggg cagtgtcgct gcgctccggg atacacaggg
     1261 gaccggtgcc gtgaggagtg ccccgtgggc cgcttcgggc aggactgtgc tgagacttgt
     1321 gactgcgcca cgggcgcccg ctgcttcccg gccaacggcg cgtgtctgtg cgaacacggc
     1381 ttcactgggg accgctgcgc cgaacgtctc tgccccgacg gcctctacgg cctcagctgc
     1441 cagatgccct gcacctgcga cccggaacac agtctcaact gccacccgat gagcggggag
     1501 tgctcttgcc tgccgggctg ggcgggcctc cactgcaacg agagctgccc gcaggacacg
     1561 cacgggcccg gctgtcagga gcactgcctc tgcctgcacg gcggcgtctg ccagcccgac
     1621 agcggcctct gccggtgcgc gcccggctac acgggcccgc actgcgctag cctctgtccc
     1681 cctgacacct atggagtcaa ctgctccgca cgctgctcct gcgaaaatgc catcgcctgc
     1741 tcgcccatcg acggcacctg cgtctgcaag gaaggttggc agcatggtaa ctgctccgtg
     1801 ccctgcccgc ctggaacctg gggcttcggt tgcaatgcca gctgccagtg tgcccacgag
     1861 gcagcctgca gcccccaaac cggagcctgt acctgtaccc ctgggtggca cgggacccac
     1921 tgccagctcc cctgcctgaa ggggatgttt ggtgaaggct gtgccagccg ctgtgactgt
     1981 gaccattctg atggctgtga ccctgttcac ggacactgcc agtgccaagc tggctggaca
     2041 ggtacccgct gccacctgcc ctgccctgag ggcttctggg gagccaactg tagcaacacc
     2101 tgcacctgca agaatggggg cacctgcatc cctgagaatg gcaactgtgt gtgtgcacct
     2161 ggattccgag gcccctcctg ccagagatcc tgtcagcccg gccgctacgg caaacgctgt
     2221 gtgccctgca agtgtgctaa ccactcctcc tgccaccctt cgaatgggac ctgctactgc
     2281 atggctggct ggacaggccc tgactgctcc caaccgtgcc ctctaggaca ctggggggcc
     2341 aactgtgccc agctctgcca gtgtcgccat ggcgggacct gccaccccca gcatgggagt
     2401 tgtttctgtc ccccaggccg gaccggacat ctctgcttgg aaggctgctc tccaggggtg
     2461 ttcggtgcca attgttccca accatgccag tgcggtcctg gagagaggtg ccacccagag
     2521 actggggcct gtgtgtgtcc cccagggcac agtggtgccc cctgcaggat tggaagccag
     2581 gagccattca ccatgatgcc tacctctcca gtggcctata actcactcgg ggcagtgatt
     2641 ggcattgcag tgctgggatc cctggtggtg gccctggtgg cgctgttcat tggctaccgc
     2701 cattggcaaa aaggcaaagt gcaccatcac ctggcagtgg cctacagcag cgggcggctg
     2761 gacggctctg agtacgttat gccagatgtc cctccgagct acagtcacta ctactccaac
     2821 cccagctacc acaccctgtc tcagtgctca cctaaccccc cgctccctaa caaggtccca
     2881 ggcagtcagc tctttgccag cctccaggcc cctgagcggc caggtggagc ccacgggcat
     2941 gataacaacc acgccacact gcctgctgac tggaagcacc gccggcagcc ccctccaggg
     3001 cctctggaca gggctaacag ccacctggac cgaagctaca gctgtagcta cagcaacagg
     3061 aatggcccag gccccttcta cagtaaaggg cccatctctg aagaggggct gggggccagt
     3121 gtggcttccc tgagcagtga gaacccctac gccaccatcc gggacctgcc cagcctgcta
     3181 gggagccccc gggagagcag ctacatggag atgaaaggcc ctccctcagg gtctcccccc
     3241 aggcagccgc ctcagctccg ggacagccag aggcggcgac acccccagcc agagagagac
     3301 agtggcacct atgagcagcc cagccccctg acccatgacc gagactctgt gggctcccgg
     3361 ccgcctctgc ctccgggcct gcctcctggc cactatgact cacccaagaa cagccacata
     3421 cctggacact atgacttgcc tccagtacgg catcccccgt cacccccact tcggtgccag
     3481 gaccgttgag gagccaagat ggtgtgcaga ggtcagcaca ccggttcttt gctgctcaag
     3541 gctaaggaca gagcccgctg taccctgcca ggagcaggga gaggactggc cggccgtgaa
     3601 catgaacatg tttaatagag gaagtgaatg gagaggagat gggagcctgg ctcccaggtt
     3661 ctaccatggg aaacactggt cagcaggaaa cctgtgttcc ttttccccaa cccattgctc
     3721 cccaaggccc ccagggccct gtatacataa actggtgggt tgaatgttgc tggataactc
     3781 tgatttcaga ttgctgtaag aagtgtatat tgggtaactt ttctgtgcac tcccgggcta
     3841 ggctctgtgt gtgcgtgcat gcgtgttttc agaggcgtac caggcactga tcctgtcctg
     3901 gggcactcac tatatagtgg agaggcagcc caaacccagt taactctaga aatagcgtga
     3961 ctggcctccc tgcattcatt tggtactccc gccaaccaac cgcttcaaaa tacaagctgg
     4021 ttaggttacc cctgcctgaa agtctccgtg ggtgccccat ggcccttggg ctacagtcaa
     4081 aattgtccaa ggccttaaag gctttgctgg cctggcctgc ctgtctcttc agcctcactc
     4141 tgaactgtgt tccctgtcac tctgccccag tcacactggc ctctacgtcc tcctatcagc
     4201 cacacgtctt cctactacag ggacttggca catctggaat gctcttcctc ccccactcac
     4261 cggttaactc ctgcttgtcc ctcacacccc gtgttctctt tcacagcact ggttactgat
     4321 gtgttcatgt accagttacc tgcagaaggc ctacagggtg ccaggcacct ctgtaatgtg
     4381 tttttttttt tttagtgtga ttatttgatt aatctctgcc ccccccacca gactcttaag
     4441 ttccctgaaa gcaggaatcc tgtgtttatg ttcaacactg gctccccttg gcacatggta
     4501 ggcactcaat aaatgttccc ccgaaggctg a
//
LOCUS       XM_032649694            4443 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X6, mRNA.
ACCESSION   XM_032649694
VERSION     XM_032649694.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4443
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 19 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             276..3401
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X1"
                     /protein_id="XP_032505585.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKC
                     ANHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFC
                     PPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQE
                     PFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGR
                     LDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPGSQLFASLQAPERPGGA
                     HGHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSNRNGPGPFYSKGPISEE
                     GLGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRR
                     HPQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRH
                     PPSPPLRCQDR"
     misc_feature    351..563
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    1884..2021
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <2703..>3230
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 tgaggtcggg agagcaggtc ttgtccatgt caccgcagcc tggagctccg cggacagatc
       61 caggcccagg ctccgtatca tgagcaccgg gatcccccag gacactctct gggctcctca
      121 ggcccagggg cccaagggcc ctgtcgccct gcccctggct cacctgagtt tctcaggccc
      181 caggatgcca tagaggcctg agacttggcc ctccaggttt gtggctgcag tgcccctcac
      241 ctgctccaca cctggccctg tcacaggcct cagcaatgtc accacctctg cgggccctct
      301 ttctcctggc cctgggcctg gggctggctg gaaccctcaa ccccaaggac cccaacacct
      361 gcagcttctg ggaaagcttc accaccacga ccaaggagtc acactcccgc cccttcagcc
      421 tgctcccctc ggagccctgt gaccggccct gggacagccc gcacacctgc ccccggccca
      481 cggttgtcta ccggaccgtg taccgccagg tggtgaagac ggagtaccga atgcgcctgc
      541 agtgctgcca gggcttctat gagagcagcg gagcctgtgt cccgctttgt gctcgggagt
      601 gtgttcatgg ccgctgcgtg gcacccaatc agtgccagtg tgtgcaagac tggcggggcg
      661 acgactgctc cagtgcttgt gccctgggag tttgggggcc acagtgtgac aagccctgca
      721 actgcggcaa cagcagctcc tgtgacccca agagtggggc atgttcctgt ccctctgggc
      781 tgcagcctcc acactgcttt cggccctgct cccctggccg ctatggccct gcctgccagt
      841 tcagctgcca gtgccatggg gcaccctgtg acccacagac cggagcctgc ctctgccccc
      901 cagagagaac tgggcccagc tgcgaggtgt tctgttcaca ggacagtgtt ggcttcttct
      961 gccccagcac ccctccttgc caaaatgggg gtgtcttcca ggcctctcgg ggctcctgca
     1021 gctgcccacc tggctggatg ggcaccatct gttccctgcc ctgccccgag ggctcctatg
     1081 gacccaactg ctcccaggaa tgtcgctgtc acaacggagg cctctgcgac cggttcaccg
     1141 ggcagtgtcg ctgcgctccg ggatacacag gggaccggtg ccgtgaggag tgccccgtgg
     1201 gccgcttcgg gcaggactgt gctgagactt gtgactgcgc cacgggcgcc cgctgcttcc
     1261 cggccaacgg cgcgtgtctg tgcgaacacg gcttcactgg ggaccgctgc gccgaacgtc
     1321 tctgccccga cggcctctac ggcctcagct gccagatgcc ctgcacctgc gacccggaac
     1381 acagtctcaa ctgccacccg atgagcgggg agtgctcttg cctgccgggc tgggcgggcc
     1441 tccactgcaa cgagagctgc ccgcaggaca cgcacgggcc cggctgtcag gagcactgcc
     1501 tctgcctgca cggcggcgtc tgccagcccg acagcggcct ctgccggtgc gcgcccggct
     1561 acacgggccc gcactgcgct agcctctgtc cccctgacac ctatggagtc aactgctccg
     1621 cacgctgctc ctgcgaaaat gccatcgcct gctcgcccat cgacggcacc tgcgtctgca
     1681 aggaaggttg gcagcatggt aactgctccg tgccctgccc gcctggaacc tggggcttcg
     1741 gttgcaatgc cagctgccag tgtgcccacg aggcagcctg cagcccccaa accggagcct
     1801 gtacctgtac ccctgggtgg cacgggaccc actgccagct cccctgcctg aaggggatgt
     1861 ttggtgaagg ctgtgccagc cgctgtgact gtgaccattc tgatggctgt gaccctgttc
     1921 acggacactg ccagtgccaa gctggctgga caggtacccg ctgccacctg ccctgccctg
     1981 agggcttctg gggagccaac tgtagcaaca cctgcacctg caagaatggg ggcacctgca
     2041 tccctgagaa tggcaactgt gtgtgtgcac ctggattccg aggcccctcc tgccagagat
     2101 cctgtcagcc cggccgctac ggcaaacgct gtgtgccctg caagtgtgct aaccactcct
     2161 cctgccaccc ttcgaatggg acctgctact gcatggctgg ctggacaggc cctgactgct
     2221 cccaaccgtg ccctctagga cactgggggg ccaactgtgc ccagctctgc cagtgtcgcc
     2281 atggcgggac ctgccacccc cagcatggga gttgtttctg tcccccaggc cggaccggac
     2341 atctctgctt ggaaggctgc tctccagggg tgttcggtgc caattgttcc caaccatgcc
     2401 agtgcggtcc tggagagagg tgccacccag agactggggc ctgtgtgtgt cccccagggc
     2461 acagtggtgc cccctgcagg attggaagcc aggagccatt caccatgatg cctacctctc
     2521 cagtggccta taactcactc ggggcagtga ttggcattgc agtgctggga tccctggtgg
     2581 tggccctggt ggcgctgttc attggctacc gccattggca aaaaggcaaa gtgcaccatc
     2641 acctggcagt ggcctacagc agcgggcggc tggacggctc tgagtacgtt atgccagatg
     2701 tccctccgag ctacagtcac tactactcca accccagcta ccacaccctg tctcagtgct
     2761 cacctaaccc cccgctccct aacaaggtcc caggcagtca gctctttgcc agcctccagg
     2821 cccctgagcg gccaggtgga gcccacgggc atgataacaa ccacgccaca ctgcctgctg
     2881 actggaagca ccgccggcag ccccctccag ggcctctgga cagggctaac agccacctgg
     2941 accgaagcta cagctgtagc tacagcaaca ggaatggccc aggccccttc tacagtaaag
     3001 ggcccatctc tgaagagggg ctgggggcca gtgtggcttc cctgagcagt gagaacccct
     3061 acgccaccat ccgggacctg cccagcctgc tagggagccc ccgggagagc agctacatgg
     3121 agatgaaagg ccctccctca gggtctcccc ccaggcagcc gcctcagctc cgggacagcc
     3181 agaggcggcg acacccccag ccagagagag acagtggcac ctatgagcag cccagccccc
     3241 tgacccatga ccgagactct gtgggctccc ggccgcctct gcctccgggc ctgcctcctg
     3301 gccactatga ctcacccaag aacagccaca tacctggaca ctatgacttg cctccagtac
     3361 ggcatccccc gtcaccccca cttcggtgcc aggaccgttg aggagccaag atggtgtgca
     3421 gaggtcagca caccggttct ttgctgctca aggctaagga cagagcccgc tgtaccctgc
     3481 caggagcagg gagaggactg gccggccgtg aacatgaaca tgtttaatag aggaagtgaa
     3541 tggagaggag atgggagcct ggctcccagg ttctaccatg ggaaacactg gtcagcagga
     3601 aacctgtgtt ccttttcccc aacccattgc tccccaaggc ccccagggcc ctgtatacat
     3661 aaactggtgg gttgaatgtt gctggataac tctgatttca gattgctgta agaagtgtat
     3721 attgggtaac ttttctgtgc actcccgggc taggctctgt gtgtgcgtgc atgcgtgttt
     3781 tcagaggcgt accaggcact gatcctgtcc tggggcactc actatatagt ggagaggcag
     3841 cccaaaccca gttaactcta gaaatagcgt gactggcctc cctgcattca tttggtactc
     3901 ccgccaacca accgcttcaa aatacaagct ggttaggtta cccctgcctg aaagtctccg
     3961 tgggtgcccc atggcccttg ggctacagtc aaaattgtcc aaggccttaa aggctttgct
     4021 ggcctggcct gcctgtctct tcagcctcac tctgaactgt gttccctgtc actctgcccc
     4081 agtcacactg gcctctacgt cctcctatca gccacacgtc ttcctactac agggacttgg
     4141 cacatctgga atgctcttcc tcccccactc accggttaac tcctgcttgt ccctcacacc
     4201 ccgtgttctc tttcacagca ctggttactg atgtgttcat gtaccagtta cctgcagaag
     4261 gcctacaggg tgccaggcac ctctgtaatg tgtttttttt tttttagtgt gattatttga
     4321 ttaatctctg ccccccccac cagactctta agttccctga aagcaggaat cctgtgttta
     4381 tgttcaacac tggctcccct tggcacatgg taggcactca ataaatgttc ccccgaaggc
     4441 tga
//
LOCUS       XM_032649703            5035 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X7, mRNA.
ACCESSION   XM_032649703
VERSION     XM_032649703.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5035
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5035
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 19 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             868..3993
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X1"
                     /protein_id="XP_032505594.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKC
                     ANHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFC
                     PPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQE
                     PFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGR
                     LDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPGSQLFASLQAPERPGGA
                     HGHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSNRNGPGPFYSKGPISEE
                     GLGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRR
                     HPQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRH
                     PPSPPLRCQDR"
     misc_feature    943..1155
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2476..2613
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <3295..>3822
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 ctgggtgggg ggatggccgt gatttgtgat gtttgctgat ttccaccccc atgcttggtt
       61 tcaagctact actgtgacag cactgaacaa ggagttggga agagaagtca tgattggctc
      121 tcagaagtca gtatgcgccc tgccagcgca ccagtggtgg ggaggggcct ccttcaaggt
      181 cacctggacc tagccctact cccaccccat aaagcaggaa gcccctaaca gcatcagggt
      241 ggttttggcc tctgcctgcc tacatccagt gatggggagc tcaccacccg aggtcgctga
      301 ttccatcaca gaactgcttt gaccgttgga aagttcttcc tctaactgag cccaagttgg
      361 cttcccttat aacttccctt catcggcttg gtataatatc aaagtgccct gggtaggggc
      421 tgtgctgggg actgggaatt caggcacagg tccctgcctc tagaggtcat ggtcagggaa
      481 caggcactag aacagtggtg tgtgggtgaa tggtgctggg ggtcccggaa gggatgggtg
      541 ggggcagtct gccagtgtgg atcgggaagc agggcaggga aagaggggtg tgacacttgg
      601 gctagacctt ggaaggtgag tgcttaaagt gaagaatggg ggggaggacg tccagacaga
      661 ggaaaccgtg tgagaaagtc tcagaggcat ggccgtgctc catctggtca ggaatcagac
      721 ctggagcctg ggaagcctgg gccagaggac cagagcctca tctcttctgc cacccctgct
      781 tggtctctgc agagacttgg ccctccaggt ttgtggctgc agtgcccctc acctgctcca
      841 cacctggccc tgtcacaggc ctcagcaatg tcaccacctc tgcgggccct ctttctcctg
      901 gccctgggcc tggggctggc tggaaccctc aaccccaagg accccaacac ctgcagcttc
      961 tgggaaagct tcaccaccac gaccaaggag tcacactccc gccccttcag cctgctcccc
     1021 tcggagccct gtgaccggcc ctgggacagc ccgcacacct gcccccggcc cacggttgtc
     1081 taccggaccg tgtaccgcca ggtggtgaag acggagtacc gaatgcgcct gcagtgctgc
     1141 cagggcttct atgagagcag cggagcctgt gtcccgcttt gtgctcggga gtgtgttcat
     1201 ggccgctgcg tggcacccaa tcagtgccag tgtgtgcaag actggcgggg cgacgactgc
     1261 tccagtgctt gtgccctggg agtttggggg ccacagtgtg acaagccctg caactgcggc
     1321 aacagcagct cctgtgaccc caagagtggg gcatgttcct gtccctctgg gctgcagcct
     1381 ccacactgct ttcggccctg ctcccctggc cgctatggcc ctgcctgcca gttcagctgc
     1441 cagtgccatg gggcaccctg tgacccacag accggagcct gcctctgccc cccagagaga
     1501 actgggccca gctgcgaggt gttctgttca caggacagtg ttggcttctt ctgccccagc
     1561 acccctcctt gccaaaatgg gggtgtcttc caggcctctc ggggctcctg cagctgccca
     1621 cctggctgga tgggcaccat ctgttccctg ccctgccccg agggctccta tggacccaac
     1681 tgctcccagg aatgtcgctg tcacaacgga ggcctctgcg accggttcac cgggcagtgt
     1741 cgctgcgctc cgggatacac aggggaccgg tgccgtgagg agtgccccgt gggccgcttc
     1801 gggcaggact gtgctgagac ttgtgactgc gccacgggcg cccgctgctt cccggccaac
     1861 ggcgcgtgtc tgtgcgaaca cggcttcact ggggaccgct gcgccgaacg tctctgcccc
     1921 gacggcctct acggcctcag ctgccagatg ccctgcacct gcgacccgga acacagtctc
     1981 aactgccacc cgatgagcgg ggagtgctct tgcctgccgg gctgggcggg cctccactgc
     2041 aacgagagct gcccgcagga cacgcacggg cccggctgtc aggagcactg cctctgcctg
     2101 cacggcggcg tctgccagcc cgacagcggc ctctgccggt gcgcgcccgg ctacacgggc
     2161 ccgcactgcg ctagcctctg tccccctgac acctatggag tcaactgctc cgcacgctgc
     2221 tcctgcgaaa atgccatcgc ctgctcgccc atcgacggca cctgcgtctg caaggaaggt
     2281 tggcagcatg gtaactgctc cgtgccctgc ccgcctggaa cctggggctt cggttgcaat
     2341 gccagctgcc agtgtgccca cgaggcagcc tgcagccccc aaaccggagc ctgtacctgt
     2401 acccctgggt ggcacgggac ccactgccag ctcccctgcc tgaaggggat gtttggtgaa
     2461 ggctgtgcca gccgctgtga ctgtgaccat tctgatggct gtgaccctgt tcacggacac
     2521 tgccagtgcc aagctggctg gacaggtacc cgctgccacc tgccctgccc tgagggcttc
     2581 tggggagcca actgtagcaa cacctgcacc tgcaagaatg ggggcacctg catccctgag
     2641 aatggcaact gtgtgtgtgc acctggattc cgaggcccct cctgccagag atcctgtcag
     2701 cccggccgct acggcaaacg ctgtgtgccc tgcaagtgtg ctaaccactc ctcctgccac
     2761 ccttcgaatg ggacctgcta ctgcatggct ggctggacag gccctgactg ctcccaaccg
     2821 tgccctctag gacactgggg ggccaactgt gcccagctct gccagtgtcg ccatggcggg
     2881 acctgccacc cccagcatgg gagttgtttc tgtcccccag gccggaccgg acatctctgc
     2941 ttggaaggct gctctccagg ggtgttcggt gccaattgtt cccaaccatg ccagtgcggt
     3001 cctggagaga ggtgccaccc agagactggg gcctgtgtgt gtcccccagg gcacagtggt
     3061 gccccctgca ggattggaag ccaggagcca ttcaccatga tgcctacctc tccagtggcc
     3121 tataactcac tcggggcagt gattggcatt gcagtgctgg gatccctggt ggtggccctg
     3181 gtggcgctgt tcattggcta ccgccattgg caaaaaggca aagtgcacca tcacctggca
     3241 gtggcctaca gcagcgggcg gctggacggc tctgagtacg ttatgccaga tgtccctccg
     3301 agctacagtc actactactc caaccccagc taccacaccc tgtctcagtg ctcacctaac
     3361 cccccgctcc ctaacaaggt cccaggcagt cagctctttg ccagcctcca ggcccctgag
     3421 cggccaggtg gagcccacgg gcatgataac aaccacgcca cactgcctgc tgactggaag
     3481 caccgccggc agccccctcc agggcctctg gacagggcta acagccacct ggaccgaagc
     3541 tacagctgta gctacagcaa caggaatggc ccaggcccct tctacagtaa agggcccatc
     3601 tctgaagagg ggctgggggc cagtgtggct tccctgagca gtgagaaccc ctacgccacc
     3661 atccgggacc tgcccagcct gctagggagc ccccgggaga gcagctacat ggagatgaaa
     3721 ggccctccct cagggtctcc ccccaggcag ccgcctcagc tccgggacag ccagaggcgg
     3781 cgacaccccc agccagagag agacagtggc acctatgagc agcccagccc cctgacccat
     3841 gaccgagact ctgtgggctc ccggccgcct ctgcctccgg gcctgcctcc tggccactat
     3901 gactcaccca agaacagcca catacctgga cactatgact tgcctccagt acggcatccc
     3961 ccgtcacccc cacttcggtg ccaggaccgt tgaggagcca agatggtgtg cagaggtcag
     4021 cacaccggtt ctttgctgct caaggctaag gacagagccc gctgtaccct gccaggagca
     4081 gggagaggac tggccggccg tgaacatgaa catgtttaat agaggaagtg aatggagagg
     4141 agatgggagc ctggctccca ggttctacca tgggaaacac tggtcagcag gaaacctgtg
     4201 ttccttttcc ccaacccatt gctccccaag gcccccaggg ccctgtatac ataaactggt
     4261 gggttgaatg ttgctggata actctgattt cagattgctg taagaagtgt atattgggta
     4321 acttttctgt gcactcccgg gctaggctct gtgtgtgcgt gcatgcgtgt tttcagaggc
     4381 gtaccaggca ctgatcctgt cctggggcac tcactatata gtggagaggc agcccaaacc
     4441 cagttaactc tagaaatagc gtgactggcc tccctgcatt catttggtac tcccgccaac
     4501 caaccgcttc aaaatacaag ctggttaggt tacccctgcc tgaaagtctc cgtgggtgcc
     4561 ccatggccct tgggctacag tcaaaattgt ccaaggcctt aaaggctttg ctggcctggc
     4621 ctgcctgtct cttcagcctc actctgaact gtgttccctg tcactctgcc ccagtcacac
     4681 tggcctctac gtcctcctat cagccacacg tcttcctact acagggactt ggcacatctg
     4741 gaatgctctt cctcccccac tcaccggtta actcctgctt gtccctcaca ccccgtgttc
     4801 tctttcacag cactggttac tgatgtgttc atgtaccagt tacctgcaga aggcctacag
     4861 ggtgccaggc acctctgtaa tgtgtttttt tttttttagt gtgattattt gattaatctc
     4921 tgcccccccc accagactct taagttccct gaaagcagga atcctgtgtt tatgttcaac
     4981 actggctccc cttggcacat ggtaggcact caataaatgt tcccccgaag gctga
//
LOCUS       XM_032649711            4595 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X8, mRNA.
ACCESSION   XM_032649711
VERSION     XM_032649711.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4595
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4595
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             431..3553
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X2"
                     /protein_id="XP_032505602.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLPC
                     PEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKCA
                     NHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFCP
                     PGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQEP
                     FTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGRL
                     DGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPGSQLFASLQAPERPGGAH
                     GHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSNRNGPGPFYSKGPISEEG
                     LGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRRH
                     PQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRHP
                     PSPPLRCQDR"
     misc_feature    506..718
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2036..2173
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <2855..>3382
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 tgccccccgc ccctccgcgc ccttccccgc ccagcgatcc acaactttcg gccactccgc
       61 cgctctcgca gtcggcctgg gactccacgc agggaccccc gcccttttct cctccaggcc
      121 caccccggcg gtccccaccc caggcggacg gcgagatagg gtcccgaggc aggtcttgtc
      181 catgtcaccg cagcctggag ctccgcggac agatccaggc ccaggctccg tatcatgagc
      241 accgggatcc cccaggacac tctctgggct cctcaggccc aggggcccaa gggccctgtc
      301 gccctgcccc tggctcacct gagtttctca ggccccagga tgccatagag gcctgagact
      361 tggccctcca ggtttgtggc tgcagtgccc ctcacctgct ccacacctgg ccctgtcaca
      421 ggcctcagca atgtcaccac ctctgcgggc cctctttctc ctggccctgg gcctggggct
      481 ggctggaacc ctcaacccca aggaccccaa cacctgcagc ttctgggaaa gcttcaccac
      541 cacgaccaag gagtcacact cccgcccctt cagcctgctc ccctcggagc cctgtgaccg
      601 gccctgggac agcccgcaca cctgcccccg gcccacggtt gtctaccgga ccgtgtaccg
      661 ccaggtggtg aagacggagt accgaatgcg cctgcagtgc tgccagggct tctatgagag
      721 cagcggagcc tgtgtcccgc tttgtgctcg ggagtgtgtt catggccgct gcgtggcacc
      781 caatcagtgc cagtgtgtgc aagactggcg gggcgacgac tgctccagtg cttgtgccct
      841 gggagtttgg gggccacagt gtgacaagcc ctgcaactgc ggcaacagca gctcctgtga
      901 ccccaagagt ggggcatgtt cctgtccctc tgggctgcag cctccacact gctttcggcc
      961 ctgctcccct ggccgctatg gccctgcctg ccagttcagc tgccagtgcc atggggcacc
     1021 ctgtgaccca cagaccggag cctgcctctg ccccccagag agaactgggc ccagctgcga
     1081 ggtgttctgt tcacaggaca gtgttggctt cttctgcccc agcacccctc cttgccaaaa
     1141 tgggggtgtc ttccaggcct ctcggggctc ctgcagctgc ccacctggct ggatgggcac
     1201 catctgttcc ctgccctgcc ccgagggctc ctatggaccc aactgctccc aggaatgtcg
     1261 ctgtcacaac ggaggcctct gcgaccggtt caccgggcag tgtcgctgcg ctccgggata
     1321 cacaggggac cggtgccgtg aggagtgccc cgtgggccgc ttcgggcagg actgtgctga
     1381 gacttgtgac tgcgccacgg gcgcccgctg cttcccggcc aacggcgcgt gtctgtgcga
     1441 acacggcttc actggggacc gctgcgccga acgtctctgc cccgacggcc tctacggcct
     1501 cagctgccag atgccctgca cctgcgaccc ggaacacagt ctcaactgcc acccgatgag
     1561 cggggagtgc tcttgcctgc cgggctgggc gggcctccac tgcaacgaga gctgcccgca
     1621 ggacacgcac gggcccggct gtcaggagca ctgcctctgc ctgcacggcg gcgtctgcca
     1681 gcccgacagc ggcctctgcc ggtgcgcgcc cggctacacg ggcccgcact gcgctagcct
     1741 ctgtccccct gacacctatg gagtcaactg ctccgcacgc tgctcctgcg aaaatgccat
     1801 cgcctgctcg cccatcgacg gcacctgcgt ctgcaaggaa ggttggcagc atggtaactg
     1861 ctccgtgccc tgcccgcctg gaacctgggg cttcggttgc aatgccagct gccagtgtgc
     1921 ccacgaggca gcctgcagcc cccaaaccgg agcctgtacc tgtacccctg ggtggcacgg
     1981 gacccactgc cagctcccct gcctggggat gtttggtgaa ggctgtgcca gccgctgtga
     2041 ctgtgaccat tctgatggct gtgaccctgt tcacggacac tgccagtgcc aagctggctg
     2101 gacaggtacc cgctgccacc tgccctgccc tgagggcttc tggggagcca actgtagcaa
     2161 cacctgcacc tgcaagaatg ggggcacctg catccctgag aatggcaact gtgtgtgtgc
     2221 acctggattc cgaggcccct cctgccagag atcctgtcag cccggccgct acggcaaacg
     2281 ctgtgtgccc tgcaagtgtg ctaaccactc ctcctgccac ccttcgaatg ggacctgcta
     2341 ctgcatggct ggctggacag gccctgactg ctcccaaccg tgccctctag gacactgggg
     2401 ggccaactgt gcccagctct gccagtgtcg ccatggcggg acctgccacc cccagcatgg
     2461 gagttgtttc tgtcccccag gccggaccgg acatctctgc ttggaaggct gctctccagg
     2521 ggtgttcggt gccaattgtt cccaaccatg ccagtgcggt cctggagaga ggtgccaccc
     2581 agagactggg gcctgtgtgt gtcccccagg gcacagtggt gccccctgca ggattggaag
     2641 ccaggagcca ttcaccatga tgcctacctc tccagtggcc tataactcac tcggggcagt
     2701 gattggcatt gcagtgctgg gatccctggt ggtggccctg gtggcgctgt tcattggcta
     2761 ccgccattgg caaaaaggca aagtgcacca tcacctggca gtggcctaca gcagcgggcg
     2821 gctggacggc tctgagtacg ttatgccaga tgtccctccg agctacagtc actactactc
     2881 caaccccagc taccacaccc tgtctcagtg ctcacctaac cccccgctcc ctaacaaggt
     2941 cccaggcagt cagctctttg ccagcctcca ggcccctgag cggccaggtg gagcccacgg
     3001 gcatgataac aaccacgcca cactgcctgc tgactggaag caccgccggc agccccctcc
     3061 agggcctctg gacagggcta acagccacct ggaccgaagc tacagctgta gctacagcaa
     3121 caggaatggc ccaggcccct tctacagtaa agggcccatc tctgaagagg ggctgggggc
     3181 cagtgtggct tccctgagca gtgagaaccc ctacgccacc atccgggacc tgcccagcct
     3241 gctagggagc ccccgggaga gcagctacat ggagatgaaa ggccctccct cagggtctcc
     3301 ccccaggcag ccgcctcagc tccgggacag ccagaggcgg cgacaccccc agccagagag
     3361 agacagtggc acctatgagc agcccagccc cctgacccat gaccgagact ctgtgggctc
     3421 ccggccgcct ctgcctccgg gcctgcctcc tggccactat gactcaccca agaacagcca
     3481 catacctgga cactatgact tgcctccagt acggcatccc ccgtcacccc cacttcggtg
     3541 ccaggaccgt tgaggagcca agatggtgtg cagaggtcag cacaccggtt ctttgctgct
     3601 caaggctaag gacagagccc gctgtaccct gccaggagca gggagaggac tggccggccg
     3661 tgaacatgaa catgtttaat agaggaagtg aatggagagg agatgggagc ctggctccca
     3721 ggttctacca tgggaaacac tggtcagcag gaaacctgtg ttccttttcc ccaacccatt
     3781 gctccccaag gcccccaggg ccctgtatac ataaactggt gggttgaatg ttgctggata
     3841 actctgattt cagattgctg taagaagtgt atattgggta acttttctgt gcactcccgg
     3901 gctaggctct gtgtgtgcgt gcatgcgtgt tttcagaggc gtaccaggca ctgatcctgt
     3961 cctggggcac tcactatata gtggagaggc agcccaaacc cagttaactc tagaaatagc
     4021 gtgactggcc tccctgcatt catttggtac tcccgccaac caaccgcttc aaaatacaag
     4081 ctggttaggt tacccctgcc tgaaagtctc cgtgggtgcc ccatggccct tgggctacag
     4141 tcaaaattgt ccaaggcctt aaaggctttg ctggcctggc ctgcctgtct cttcagcctc
     4201 actctgaact gtgttccctg tcactctgcc ccagtcacac tggcctctac gtcctcctat
     4261 cagccacacg tcttcctact acagggactt ggcacatctg gaatgctctt cctcccccac
     4321 tcaccggtta actcctgctt gtccctcaca ccccgtgttc tctttcacag cactggttac
     4381 tgatgtgttc atgtaccagt tacctgcaga aggcctacag ggtgccaggc acctctgtaa
     4441 tgtgtttttt tttttttagt gtgattattt gattaatctc tgcccccccc accagactct
     4501 taagttccct gaaagcagga atcctgtgtt tatgttcaac actggctccc cttggcacat
     4561 ggtaggcact caataaatgt tcccccgaag gctga
//
LOCUS       XM_032649717            4471 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X9, mRNA.
ACCESSION   XM_032649717
VERSION     XM_032649717.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4471
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4471
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             430..3429
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X3"
                     /protein_id="XP_032505608.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCPLGHWGANCAQLCQ
                     CRHGGTCHPQHGSCFCPPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACV
                     CPPGHSGAPCRIGSQEPFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQ
                     KGKVHHHLAVAYSSGRLDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPLPNKVPG
                     SQLFASLQAPERPGGAHGHDNNHATLPADWKHRRQPPPGPLDRANSHLDRSYSCSYSN
                     RNGPGPFYSKGPISEEGLGASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSG
                     SPPRQPPQLRDSQRRRHPQPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSP
                     KNSHIPGHYDLPPVRHPPSPPLRCQDR"
     misc_feature    505..717
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2038..2175
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
     misc_feature    <2731..>3258
                     /gene="PEAR1"
                     /note="variable surface protein Vir28; Provisional;
                     Region: PTZ00249"
                     /db_xref="CDD:140276"
ORIGIN      
        1 gccccccgcc cctccgcgcc cttccccgcc cagcgatcca caactttcgg ccactccgcc
       61 gctctcgcag tcggcctggg actccacgca gggacccccg cccttttctc ctccaggccc
      121 accccggcgg tccccacccc aggcggacgg cgagataggg tcccgaggca ggtcttgtcc
      181 atgtcaccgc agcctggagc tccgcggaca gatccaggcc caggctccgt atcatgagca
      241 ccgggatccc ccaggacact ctctgggctc ctcaggccca ggggcccaag ggccctgtcg
      301 ccctgcccct ggctcacctg agtttctcag gccccaggat gccatagagg cctgagactt
      361 ggccctccag gtttgtggct gcagtgcccc tcacctgctc cacacctggc cctgtcacag
      421 gcctcagcaa tgtcaccacc tctgcgggcc ctctttctcc tggccctggg cctggggctg
      481 gctggaaccc tcaaccccaa ggaccccaac acctgcagct tctgggaaag cttcaccacc
      541 acgaccaagg agtcacactc ccgccccttc agcctgctcc cctcggagcc ctgtgaccgg
      601 ccctgggaca gcccgcacac ctgcccccgg cccacggttg tctaccggac cgtgtaccgc
      661 caggtggtga agacggagta ccgaatgcgc ctgcagtgct gccagggctt ctatgagagc
      721 agcggagcct gtgtcccgct ttgtgctcgg gagtgtgttc atggccgctg cgtggcaccc
      781 aatcagtgcc agtgtgtgca agactggcgg ggcgacgact gctccagtgc ttgtgccctg
      841 ggagtttggg ggccacagtg tgacaagccc tgcaactgcg gcaacagcag ctcctgtgac
      901 cccaagagtg gggcatgttc ctgtccctct gggctgcagc ctccacactg ctttcggccc
      961 tgctcccctg gccgctatgg ccctgcctgc cagttcagct gccagtgcca tggggcaccc
     1021 tgtgacccac agaccggagc ctgcctctgc cccccagaga gaactgggcc cagctgcgag
     1081 gtgttctgtt cacaggacag tgttggcttc ttctgcccca gcacccctcc ttgccaaaat
     1141 gggggtgtct tccaggcctc tcggggctcc tgcagctgcc cacctggctg gatgggcacc
     1201 atctgttccc tgccctgccc cgagggctcc tatggaccca actgctccca ggaatgtcgc
     1261 tgtcacaacg gaggcctctg cgaccggttc accgggcagt gtcgctgcgc tccgggatac
     1321 acaggggacc ggtgccgtga ggagtgcccc gtgggccgct tcgggcagga ctgtgctgag
     1381 acttgtgact gcgccacggg cgcccgctgc ttcccggcca acggcgcgtg tctgtgcgaa
     1441 cacggcttca ctggggaccg ctgcgccgaa cgtctctgcc ccgacggcct ctacggcctc
     1501 agctgccaga tgccctgcac ctgcgacccg gaacacagtc tcaactgcca cccgatgagc
     1561 ggggagtgct cttgcctgcc gggctgggcg ggcctccact gcaacgagag ctgcccgcag
     1621 gacacgcacg ggcccggctg tcaggagcac tgcctctgcc tgcacggcgg cgtctgccag
     1681 cccgacagcg gcctctgccg gtgcgcgccc ggctacacgg gcccgcactg cgctagcctc
     1741 tgtccccctg acacctatgg agtcaactgc tccgcacgct gctcctgcga aaatgccatc
     1801 gcctgctcgc ccatcgacgg cacctgcgtc tgcaaggaag gttggcagca tggtaactgc
     1861 tccgtgccct gcccgcctgg aacctggggc ttcggttgca atgccagctg ccagtgtgcc
     1921 cacgaggcag cctgcagccc ccaaaccgga gcctgtacct gtacccctgg gtggcacggg
     1981 acccactgcc agctcccctg cctgaagggg atgtttggtg aaggctgtgc cagccgctgt
     2041 gactgtgacc attctgatgg ctgtgaccct gttcacggac actgccagtg ccaagctggc
     2101 tggacaggta cccgctgcca cctgccctgc cctgagggct tctggggagc caactgtagc
     2161 aacacctgca cctgcaagaa tgggggcacc tgcatccctg agaatggcaa ctgtgtgtgt
     2221 gcacctggat tccgaggccc ctcctgccag agatcgtgcc ctctaggaca ctggggggcc
     2281 aactgtgccc agctctgcca gtgtcgccat ggcgggacct gccaccccca gcatgggagt
     2341 tgtttctgtc ccccaggccg gaccggacat ctctgcttgg aaggctgctc tccaggggtg
     2401 ttcggtgcca attgttccca accatgccag tgcggtcctg gagagaggtg ccacccagag
     2461 actggggcct gtgtgtgtcc cccagggcac agtggtgccc cctgcaggat tggaagccag
     2521 gagccattca ccatgatgcc tacctctcca gtggcctata actcactcgg ggcagtgatt
     2581 ggcattgcag tgctgggatc cctggtggtg gccctggtgg cgctgttcat tggctaccgc
     2641 cattggcaaa aaggcaaagt gcaccatcac ctggcagtgg cctacagcag cgggcggctg
     2701 gacggctctg agtacgttat gccagatgtc cctccgagct acagtcacta ctactccaac
     2761 cccagctacc acaccctgtc tcagtgctca cctaaccccc cgctccctaa caaggtccca
     2821 ggcagtcagc tctttgccag cctccaggcc cctgagcggc caggtggagc ccacgggcat
     2881 gataacaacc acgccacact gcctgctgac tggaagcacc gccggcagcc ccctccaggg
     2941 cctctggaca gggctaacag ccacctggac cgaagctaca gctgtagcta cagcaacagg
     3001 aatggcccag gccccttcta cagtaaaggg cccatctctg aagaggggct gggggccagt
     3061 gtggcttccc tgagcagtga gaacccctac gccaccatcc gggacctgcc cagcctgcta
     3121 gggagccccc gggagagcag ctacatggag atgaaaggcc ctccctcagg gtctcccccc
     3181 aggcagccgc ctcagctccg ggacagccag aggcggcgac acccccagcc agagagagac
     3241 agtggcacct atgagcagcc cagccccctg acccatgacc gagactctgt gggctcccgg
     3301 ccgcctctgc ctccgggcct gcctcctggc cactatgact cacccaagaa cagccacata
     3361 cctggacact atgacttgcc tccagtacgg catcccccgt cacccccact tcggtgccag
     3421 gaccgttgag gagccaagat ggtgtgcaga ggtcagcaca ccggttcttt gctgctcaag
     3481 gctaaggaca gagcccgctg taccctgcca ggagcaggga gaggactggc cggccgtgaa
     3541 catgaacatg tttaatagag gaagtgaatg gagaggagat gggagcctgg ctcccaggtt
     3601 ctaccatggg aaacactggt cagcaggaaa cctgtgttcc ttttccccaa cccattgctc
     3661 cccaaggccc ccagggccct gtatacataa actggtgggt tgaatgttgc tggataactc
     3721 tgatttcaga ttgctgtaag aagtgtatat tgggtaactt ttctgtgcac tcccgggcta
     3781 ggctctgtgt gtgcgtgcat gcgtgttttc agaggcgtac caggcactga tcctgtcctg
     3841 gggcactcac tatatagtgg agaggcagcc caaacccagt taactctaga aatagcgtga
     3901 ctggcctccc tgcattcatt tggtactccc gccaaccaac cgcttcaaaa tacaagctgg
     3961 ttaggttacc cctgcctgaa agtctccgtg ggtgccccat ggcccttggg ctacagtcaa
     4021 aattgtccaa ggccttaaag gctttgctgg cctggcctgc ctgtctcttc agcctcactc
     4081 tgaactgtgt tccctgtcac tctgccccag tcacactggc ctctacgtcc tcctatcagc
     4141 cacacgtctt cctactacag ggacttggca catctggaat gctcttcctc ccccactcac
     4201 cggttaactc ctgcttgtcc ctcacacccc gtgttctctt tcacagcact ggttactgat
     4261 gtgttcatgt accagttacc tgcagaaggc ctacagggtg ccaggcacct ctgtaatgtg
     4321 tttttttttt tttagtgtga ttatttgatt aatctctgcc ccccccacca gactcttaag
     4381 ttccctgaaa gcaggaatcc tgtgtttatg ttcaacactg gctccccttg gcacatggta
     4441 ggcactcaat aaatgttccc ccgaaggctg a
//
LOCUS       XM_032649727            4371 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X10, mRNA.
ACCESSION   XM_032649727
VERSION     XM_032649727.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4371
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4371
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             432..3329
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X4"
                     /protein_id="XP_032505618.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKC
                     ANHSSCHPSNGTCYCMAGWTGPDCSQPCPLGHWGANCAQLCQCRHGGTCHPQHGSCFC
                     PPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACVCPPGHSGAPCRIGSQE
                     PFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQKGKVHHHLAVAYSSGR
                     LDGSEYVMPANSHLDRSYSCSYSNRNGPGPFYSKGPISEEGLGASVASLSSENPYATI
                     RDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRRHPQPERDSGTYEQPSPLT
                     HDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRHPPSPPLRCQDR"
     misc_feature    507..719
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2040..2177
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
ORIGIN      
        1 ctgccccccg cccctccgcg cccttccccg cccagcgatc cacaactttc ggccactccg
       61 ccgctctcgc agtcggcctg ggactccacg cagggacccc cgcccttttc tcctccaggc
      121 ccaccccggc ggtccccacc ccaggcggac ggcgagatag ggtcccgagg caggtcttgt
      181 ccatgtcacc gcagcctgga gctccgcgga cagatccagg cccaggctcc gtatcatgag
      241 caccgggatc ccccaggaca ctctctgggc tcctcaggcc caggggccca agggccctgt
      301 cgccctgccc ctggctcacc tgagtttctc aggccccagg atgccataga ggcctgagac
      361 ttggccctcc aggtttgtgg ctgcagtgcc cctcacctgc tccacacctg gccctgtcac
      421 aggcctcagc aatgtcacca cctctgcggg ccctctttct cctggccctg ggcctggggc
      481 tggctggaac cctcaacccc aaggacccca acacctgcag cttctgggaa agcttcacca
      541 ccacgaccaa ggagtcacac tcccgcccct tcagcctgct cccctcggag ccctgtgacc
      601 ggccctggga cagcccgcac acctgccccc ggcccacggt tgtctaccgg accgtgtacc
      661 gccaggtggt gaagacggag taccgaatgc gcctgcagtg ctgccagggc ttctatgaga
      721 gcagcggagc ctgtgtcccg ctttgtgctc gggagtgtgt tcatggccgc tgcgtggcac
      781 ccaatcagtg ccagtgtgtg caagactggc ggggcgacga ctgctccagt gcttgtgccc
      841 tgggagtttg ggggccacag tgtgacaagc cctgcaactg cggcaacagc agctcctgtg
      901 accccaagag tggggcatgt tcctgtccct ctgggctgca gcctccacac tgctttcggc
      961 cctgctcccc tggccgctat ggccctgcct gccagttcag ctgccagtgc catggggcac
     1021 cctgtgaccc acagaccgga gcctgcctct gccccccaga gagaactggg cccagctgcg
     1081 aggtgttctg ttcacaggac agtgttggct tcttctgccc cagcacccct ccttgccaaa
     1141 atgggggtgt cttccaggcc tctcggggct cctgcagctg cccacctggc tggatgggca
     1201 ccatctgttc cctgccctgc cccgagggct cctatggacc caactgctcc caggaatgtc
     1261 gctgtcacaa cggaggcctc tgcgaccggt tcaccgggca gtgtcgctgc gctccgggat
     1321 acacagggga ccggtgccgt gaggagtgcc ccgtgggccg cttcgggcag gactgtgctg
     1381 agacttgtga ctgcgccacg ggcgcccgct gcttcccggc caacggcgcg tgtctgtgcg
     1441 aacacggctt cactggggac cgctgcgccg aacgtctctg ccccgacggc ctctacggcc
     1501 tcagctgcca gatgccctgc acctgcgacc cggaacacag tctcaactgc cacccgatga
     1561 gcggggagtg ctcttgcctg ccgggctggg cgggcctcca ctgcaacgag agctgcccgc
     1621 aggacacgca cgggcccggc tgtcaggagc actgcctctg cctgcacggc ggcgtctgcc
     1681 agcccgacag cggcctctgc cggtgcgcgc ccggctacac gggcccgcac tgcgctagcc
     1741 tctgtccccc tgacacctat ggagtcaact gctccgcacg ctgctcctgc gaaaatgcca
     1801 tcgcctgctc gcccatcgac ggcacctgcg tctgcaagga aggttggcag catggtaact
     1861 gctccgtgcc ctgcccgcct ggaacctggg gcttcggttg caatgccagc tgccagtgtg
     1921 cccacgaggc agcctgcagc ccccaaaccg gagcctgtac ctgtacccct gggtggcacg
     1981 ggacccactg ccagctcccc tgcctgaagg ggatgtttgg tgaaggctgt gccagccgct
     2041 gtgactgtga ccattctgat ggctgtgacc ctgttcacgg acactgccag tgccaagctg
     2101 gctggacagg tacccgctgc cacctgccct gccctgaggg cttctgggga gccaactgta
     2161 gcaacacctg cacctgcaag aatgggggca cctgcatccc tgagaatggc aactgtgtgt
     2221 gtgcacctgg attccgaggc ccctcctgcc agagatcctg tcagcccggc cgctacggca
     2281 aacgctgtgt gccctgcaag tgtgctaacc actcctcctg ccacccttcg aatgggacct
     2341 gctactgcat ggctggctgg acaggccctg actgctccca accgtgccct ctaggacact
     2401 ggggggccaa ctgtgcccag ctctgccagt gtcgccatgg cgggacctgc cacccccagc
     2461 atgggagttg tttctgtccc ccaggccgga ccggacatct ctgcttggaa ggctgctctc
     2521 caggggtgtt cggtgccaat tgttcccaac catgccagtg cggtcctgga gagaggtgcc
     2581 acccagagac tggggcctgt gtgtgtcccc cagggcacag tggtgccccc tgcaggattg
     2641 gaagccagga gccattcacc atgatgccta cctctccagt ggcctataac tcactcgggg
     2701 cagtgattgg cattgcagtg ctgggatccc tggtggtggc cctggtggcg ctgttcattg
     2761 gctaccgcca ttggcaaaaa ggcaaagtgc accatcacct ggcagtggcc tacagcagcg
     2821 ggcggctgga cggctctgag tacgttatgc cagctaacag ccacctggac cgaagctaca
     2881 gctgtagcta cagcaacagg aatggcccag gccccttcta cagtaaaggg cccatctctg
     2941 aagaggggct gggggccagt gtggcttccc tgagcagtga gaacccctac gccaccatcc
     3001 gggacctgcc cagcctgcta gggagccccc gggagagcag ctacatggag atgaaaggcc
     3061 ctccctcagg gtctcccccc aggcagccgc ctcagctccg ggacagccag aggcggcgac
     3121 acccccagcc agagagagac agtggcacct atgagcagcc cagccccctg acccatgacc
     3181 gagactctgt gggctcccgg ccgcctctgc ctccgggcct gcctcctggc cactatgact
     3241 cacccaagaa cagccacata cctggacact atgacttgcc tccagtacgg catcccccgt
     3301 cacccccact tcggtgccag gaccgttgag gagccaagat ggtgtgcaga ggtcagcaca
     3361 ccggttcttt gctgctcaag gctaaggaca gagcccgctg taccctgcca ggagcaggga
     3421 gaggactggc cggccgtgaa catgaacatg tttaatagag gaagtgaatg gagaggagat
     3481 gggagcctgg ctcccaggtt ctaccatggg aaacactggt cagcaggaaa cctgtgttcc
     3541 ttttccccaa cccattgctc cccaaggccc ccagggccct gtatacataa actggtgggt
     3601 tgaatgttgc tggataactc tgatttcaga ttgctgtaag aagtgtatat tgggtaactt
     3661 ttctgtgcac tcccgggcta ggctctgtgt gtgcgtgcat gcgtgttttc agaggcgtac
     3721 caggcactga tcctgtcctg gggcactcac tatatagtgg agaggcagcc caaacccagt
     3781 taactctaga aatagcgtga ctggcctccc tgcattcatt tggtactccc gccaaccaac
     3841 cgcttcaaaa tacaagctgg ttaggttacc cctgcctgaa agtctccgtg ggtgccccat
     3901 ggcccttggg ctacagtcaa aattgtccaa ggccttaaag gctttgctgg cctggcctgc
     3961 ctgtctcttc agcctcactc tgaactgtgt tccctgtcac tctgccccag tcacactggc
     4021 ctctacgtcc tcctatcagc cacacgtctt cctactacag ggacttggca catctggaat
     4081 gctcttcctc ccccactcac cggttaactc ctgcttgtcc ctcacacccc gtgttctctt
     4141 tcacagcact ggttactgat gtgttcatgt accagttacc tgcagaaggc ctacagggtg
     4201 ccaggcacct ctgtaatgtg tttttttttt tttagtgtga ttatttgatt aatctctgcc
     4261 ccccccacca gactcttaag ttccctgaaa gcaggaatcc tgtgtttatg ttcaacactg
     4321 gctccccttg gcacatggta ggcactcaat aaatgttccc ccgaaggctg a
//
LOCUS       XR_004352287            4658 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X11, misc_RNA.
ACCESSION   XR_004352287
VERSION     XR_004352287.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4658
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4658
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762552"
     misc_RNA        1..4658
                     /gene="PEAR1"
                     /product="platelet endothelial aggregation receptor 1,
                     transcript variant X11"
                     /db_xref="GeneID:116762552"
ORIGIN      
        1 ttcctgcccc ccgcccctcc gcgcccttcc ccgcccagcg atccacaact ttcggccact
       61 ccgccgctct cgcagtcggc ctgggactcc acgcagggac ccccgccctt ttctcctcca
      121 ggcccacccc ggcggtcccc accccaggcg gacggcgaga tagggtcccg aggcaggtct
      181 tgtccatgtc accgcagcct ggagctccgc ggacagatcc aggcccaggc tccgtatcat
      241 gagcaccggg atcccccagg acactctctg ggctcctcag gcccaggggc ccaagggccc
      301 tgtcgccctg cccctggctc acctgagttt ctcaggcccc aggatgccat agaggcctga
      361 gacttggccc tccaggtttg tggctgcagt gcccctcacc tgctccacac ctggccctgt
      421 cacaggcctc agcaatgtca ccacctctgc gggccctctt tctcctggcc ctgggcctgg
      481 ggctggctgg aaccctcaac cccaaggacc ccaacacctg cagcttctgg gaaagcttca
      541 ccaccacgac caaggagtca cactcccgcc ccttcagcct gctcccctcg gagccctgtg
      601 accggccctg ggacagcccg cacacctgcc cccggcccac ggttgtctac cggaccgtgt
      661 accgccaggt ggtgaagacg gagtaccgaa tgcgcctgca gtgctgccag ggcttctatg
      721 agagcagcgg agcctgtgtc ccgctttgtg ctcgggagtg tgttcatggc cgctgcgtgg
      781 cacccaatca gtgccagtgt gtgcaagact ggcggggcga cgactgctcc agtgcttgtg
      841 ccctgggagt ttgggggcca cagtgtgaca agccctgcaa ctgcggcaac agcagctcct
      901 gtgaccccaa gagtggggca tgttcctgtc cctctgggct gcagcctcca cactgctttc
      961 ggccctgctc ccctggccgc tatggccctg cctgccagtt cagctgccag tgccatgggg
     1021 caccctgtga cccacagacc ggagcctgcc tctgcccccc agagagaact gggcccagct
     1081 gcgaggtgtt ctgttcacag gacagtgttg gcttcttctg ccccagcacc cctccttgcc
     1141 aaaatggggg tgtcttccag gcctctcggg gctcctgcag ctgcccacct ggctggatgg
     1201 gcaccatctg ttccctgccc tgccccgagg gctcctatgg acccaactgc tcccaggaat
     1261 gtcgctgtca caacggaggc ctctgcgacc ggttcaccgg gcagtgtcgc tgcgctccgg
     1321 gatacacagg ggaccggtgc cgtgaggagt gccccgtggg ccgcttcggg caggactgtg
     1381 ctgagacttg tgactgcgcc acgggcgccc gctgcttccc ggccaacggc gcgtgtctgt
     1441 gcgaacacgg cttcactggg gaccgctgcg ccgaacgtct ctgccccgac ggcctctacg
     1501 gcctcagctg ccagatgccc tgcacctgcg acccggaaca cagtctcaac tgccacccga
     1561 tgagcgggga gtgctcttgc ctgccgggct gggcgggcct ccactgcaac gagagctgcc
     1621 cgcaggacac gcacgggccc ggctgtcagg agcactgcct ctgcctgcac ggcggcgtct
     1681 gccagcccga cagcggcctc tgccggtgcg cgcccggcta cacgggcccg cactgcgcta
     1741 gcctctgtcc ccctgacacc tatggagtca actgctccgc acgctgctcc tgcgaaaatg
     1801 ccatcgcctg ctcgcccatc gacggcacct gcgtctgcaa ggaaggttgg cagcatggta
     1861 actgctccgt gccctgcccg cctggaacct ggggcttcgg ttgcaatgcc agctgccagt
     1921 gtgcccacga ggcagcctgc agcccccaaa ccggagcctg tacctgtacc cctgggtggc
     1981 acgggaccca ctgccagctc ccctgcctga aggggatgtt tggtgaaggc tgtgccagcc
     2041 gctgtgactg tgaccattct gatggctgtg accctgttca cggacactgc cagtgccaag
     2101 ctggctggac aggtacccgc tgccacctgc cctgccctga gggcttctgg ggagccaact
     2161 gtagcaacac ctgcacctgc aagaatgggg gcacctgcat ccctgagaat ggcaactgtg
     2221 tgtgtgcacc tggattccga ggcccctcct gccagagatc ctgtcagccc ggccgctacg
     2281 gcaaacgctg tgtgccctgc aagtgtgcta accactcctc ctgccaccct tcgaatggga
     2341 cctgctactg catggctggc tggacaggcc ctgactgctc ccaaccgtgc cctctaggac
     2401 actggggggc caactgtgcc cagctctgcc agtgtcgcca tggcgggacc tgccaccccc
     2461 agcatgggag ttgtttctgt cccccaggcc ggaccggaca tctctgcttg gaaggctgct
     2521 ctccaggggt gttcggtgcc aattgttccc aaccatgcca gtgcggtcct ggagagaggt
     2581 gccacccaga gactggggcc tgtgtgtgtc ccccagggca cagtggtgcc ccctgcagga
     2641 ttggaagcca ggagccattc accatgatgc ctacctctcc agtggcctat aactcactcg
     2701 gggcagtgat tggcattgca gtgctgggat ccctggtggt ggccctggtg gcgctgttca
     2761 ttggctaccg ccattggcaa aaaggcaaag tgcaccatca cctggcagtg gcctacagca
     2821 gcgggcggct ggacggctct gagtacgtta tgccaggccc aggctggtct ctggccgggc
     2881 aggtcaccct gcaactgtgt ctgtctgtgc agatgtccct ccgagctaca gtcactacta
     2941 ctccaacccc agctaccaca ccctgtctca gtgctcacct aaccccccgc tccctaacaa
     3001 ggtcccaggc agtcagctct ttgccagcct ccaggcccct gagcggccag gtggagccca
     3061 cgggcatgat aacaaccacg ccacactgcc tgctgactgg aagcaccgcc ggcagccccc
     3121 tccagggcct ctggacaggg ctaacagcca cctggaccga agctacagct gtagctacag
     3181 caacaggaat ggcccaggcc ccttctacag taaagggccc atctctgaag aggggctggg
     3241 ggccagtgtg gcttccctga gcagtgagaa cccctacgcc accatccggg acctgcccag
     3301 cctgctaggg agcccccggg agagcagcta catggagatg aaaggccctc cctcagggtc
     3361 tccccccagg cagccgcctc agctccggga cagccagagg cggcgacacc cccagccaga
     3421 gagagacagt ggcacctatg agcagcccag ccccctgacc catgaccgag actctgtggg
     3481 ctcccggccg cctctgcctc cgggcctgcc tcctggccac tatgactcac ccaagaacag
     3541 ccacatacct ggacactatg acttgcctcc agtacggcat cccccgtcac ccccacttcg
     3601 gtgccaggac cgttgaggag ccaagatggt gtgcagaggt cagcacaccg gttctttgct
     3661 gctcaaggct aaggacagag cccgctgtac cctgccagga gcagggagag gactggccgg
     3721 ccgtgaacat gaacatgttt aatagaggaa gtgaatggag aggagatggg agcctggctc
     3781 ccaggttcta ccatgggaaa cactggtcag caggaaacct gtgttccttt tccccaaccc
     3841 attgctcccc aaggccccca gggccctgta tacataaact ggtgggttga atgttgctgg
     3901 ataactctga tttcagattg ctgtaagaag tgtatattgg gtaacttttc tgtgcactcc
     3961 cgggctaggc tctgtgtgtg cgtgcatgcg tgttttcaga ggcgtaccag gcactgatcc
     4021 tgtcctgggg cactcactat atagtggaga ggcagcccaa acccagttaa ctctagaaat
     4081 agcgtgactg gcctccctgc attcatttgg tactcccgcc aaccaaccgc ttcaaaatac
     4141 aagctggtta ggttacccct gcctgaaagt ctccgtgggt gccccatggc ccttgggcta
     4201 cagtcaaaat tgtccaaggc cttaaaggct ttgctggcct ggcctgcctg tctcttcagc
     4261 ctcactctga actgtgttcc ctgtcactct gccccagtca cactggcctc tacgtcctcc
     4321 tatcagccac acgtcttcct actacaggga cttggcacat ctggaatgct cttcctcccc
     4381 cactcaccgg ttaactcctg cttgtccctc acaccccgtg ttctctttca cagcactggt
     4441 tactgatgtg ttcatgtacc agttacctgc agaaggccta cagggtgcca ggcacctctg
     4501 taatgtgttt tttttttttt agtgtgatta tttgattaat ctctgccccc cccaccagac
     4561 tcttaagttc cctgaaagca ggaatcctgt gtttatgttc aacactggct ccccttggca
     4621 catggtaggc actcaataaa tgttcccccg aaggctga
//
LOCUS       XM_032649740            4245 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet endothelial aggregation receptor
            1 (PEAR1), transcript variant X12, mRNA.
ACCESSION   XM_032649740
VERSION     XM_032649740.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4245
                     /gene="PEAR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762552"
     CDS             432..3203
                     /gene="PEAR1"
                     /codon_start=1
                     /product="platelet endothelial aggregation receptor 1
                     isoform X5"
                     /protein_id="XP_032505631.1"
                     /db_xref="GeneID:116762552"
                     /translation="MSPPLRALFLLALGLGLAGTLNPKDPNTCSFWESFTTTTKESHS
                     RPFSLLPSEPCDRPWDSPHTCPRPTVVYRTVYRQVVKTEYRMRLQCCQGFYESSGACV
                     PLCARECVHGRCVAPNQCQCVQDWRGDDCSSACALGVWGPQCDKPCNCGNSSSCDPKS
                     GACSCPSGLQPPHCFRPCSPGRYGPACQFSCQCHGAPCDPQTGACLCPPERTGPSCEV
                     FCSQDSVGFFCPSTPPCQNGGVFQASRGSCSCPPGWMGTICSLPCPEGSYGPNCSQEC
                     RCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCATGARCFPANGAC
                     LCEHGFTGDRCAERLCPDGLYGLSCQMPCTCDPEHSLNCHPMSGECSCLPGWAGLHCN
                     ESCPQDTHGPGCQEHCLCLHGGVCQPDSGLCRCAPGYTGPHCASLCPPDTYGVNCSAR
                     CSCENAIACSPIDGTCVCKEGWQHGNCSVPCPPGTWGFGCNASCQCAHEAACSPQTGA
                     CTCTPGWHGTHCQLPCLKGMFGEGCASRCDCDHSDGCDPVHGHCQCQAGWTGTRCHLP
                     CPEGFWGANCSNTCTCKNGGTCIPENGNCVCAPGFRGPSCQRSCPLGHWGANCAQLCQ
                     CRHGGTCHPQHGSCFCPPGRTGHLCLEGCSPGVFGANCSQPCQCGPGERCHPETGACV
                     CPPGHSGAPCRIGSQEPFTMMPTSPVAYNSLGAVIGIAVLGSLVVALVALFIGYRHWQ
                     KGKVHHHLAVAYSSGRLDGSEYVMPANSHLDRSYSCSYSNRNGPGPFYSKGPISEEGL
                     GASVASLSSENPYATIRDLPSLLGSPRESSYMEMKGPPSGSPPRQPPQLRDSQRRRHP
                     QPERDSGTYEQPSPLTHDRDSVGSRPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRHPP
                     SPPLRCQDR"
     misc_feature    507..719
                     /gene="PEAR1"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    2040..2177
                     /gene="PEAR1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cl21504"
                     /db_xref="CDD:473889"
ORIGIN      
        1 ctgccccccg cccctccgcg cccttccccg cccagcgatc cacaactttc ggccactccg
       61 ccgctctcgc agtcggcctg ggactccacg cagggacccc cgcccttttc tcctccaggc
      121 ccaccccggc ggtccccacc ccaggcggac ggcgagatag ggtcccgagg caggtcttgt
      181 ccatgtcacc gcagcctgga gctccgcgga cagatccagg cccaggctcc gtatcatgag
      241 caccgggatc ccccaggaca ctctctgggc tcctcaggcc caggggccca agggccctgt
      301 cgccctgccc ctggctcacc tgagtttctc aggccccagg atgccataga ggcctgagac
      361 ttggccctcc aggtttgtgg ctgcagtgcc cctcacctgc tccacacctg gccctgtcac
      421 aggcctcagc aatgtcacca cctctgcggg ccctctttct cctggccctg ggcctggggc
      481 tggctggaac cctcaacccc aaggacccca acacctgcag cttctgggaa agcttcacca
      541 ccacgaccaa ggagtcacac tcccgcccct tcagcctgct cccctcggag ccctgtgacc
      601 ggccctggga cagcccgcac acctgccccc ggcccacggt tgtctaccgg accgtgtacc
      661 gccaggtggt gaagacggag taccgaatgc gcctgcagtg ctgccagggc ttctatgaga
      721 gcagcggagc ctgtgtcccg ctttgtgctc gggagtgtgt tcatggccgc tgcgtggcac
      781 ccaatcagtg ccagtgtgtg caagactggc ggggcgacga ctgctccagt gcttgtgccc
      841 tgggagtttg ggggccacag tgtgacaagc cctgcaactg cggcaacagc agctcctgtg
      901 accccaagag tggggcatgt tcctgtccct ctgggctgca gcctccacac tgctttcggc
      961 cctgctcccc tggccgctat ggccctgcct gccagttcag ctgccagtgc catggggcac
     1021 cctgtgaccc acagaccgga gcctgcctct gccccccaga gagaactggg cccagctgcg
     1081 aggtgttctg ttcacaggac agtgttggct tcttctgccc cagcacccct ccttgccaaa
     1141 atgggggtgt cttccaggcc tctcggggct cctgcagctg cccacctggc tggatgggca
     1201 ccatctgttc cctgccctgc cccgagggct cctatggacc caactgctcc caggaatgtc
     1261 gctgtcacaa cggaggcctc tgcgaccggt tcaccgggca gtgtcgctgc gctccgggat
     1321 acacagggga ccggtgccgt gaggagtgcc ccgtgggccg cttcgggcag gactgtgctg
     1381 agacttgtga ctgcgccacg ggcgcccgct gcttcccggc caacggcgcg tgtctgtgcg
     1441 aacacggctt cactggggac cgctgcgccg aacgtctctg ccccgacggc ctctacggcc
     1501 tcagctgcca gatgccctgc acctgcgacc cggaacacag tctcaactgc cacccgatga
     1561 gcggggagtg ctcttgcctg ccgggctggg cgggcctcca ctgcaacgag agctgcccgc
     1621 aggacacgca cgggcccggc tgtcaggagc actgcctctg cctgcacggc ggcgtctgcc
     1681 agcccgacag cggcctctgc cggtgcgcgc ccggctacac gggcccgcac tgcgctagcc
     1741 tctgtccccc tgacacctat ggagtcaact gctccgcacg ctgctcctgc gaaaatgcca
     1801 tcgcctgctc gcccatcgac ggcacctgcg tctgcaagga aggttggcag catggtaact
     1861 gctccgtgcc ctgcccgcct ggaacctggg gcttcggttg caatgccagc tgccagtgtg
     1921 cccacgaggc agcctgcagc ccccaaaccg gagcctgtac ctgtacccct gggtggcacg
     1981 ggacccactg ccagctcccc tgcctgaagg ggatgtttgg tgaaggctgt gccagccgct
     2041 gtgactgtga ccattctgat ggctgtgacc ctgttcacgg acactgccag tgccaagctg
     2101 gctggacagg tacccgctgc cacctgccct gccctgaggg cttctgggga gccaactgta
     2161 gcaacacctg cacctgcaag aatgggggca cctgcatccc tgagaatggc aactgtgtgt
     2221 gtgcacctgg attccgaggc ccctcctgcc agagatcgtg ccctctagga cactgggggg
     2281 ccaactgtgc ccagctctgc cagtgtcgcc atggcgggac ctgccacccc cagcatggga
     2341 gttgtttctg tcccccaggc cggaccggac atctctgctt ggaaggctgc tctccagggg
     2401 tgttcggtgc caattgttcc caaccatgcc agtgcggtcc tggagagagg tgccacccag
     2461 agactggggc ctgtgtgtgt cccccagggc acagtggtgc cccctgcagg attggaagcc
     2521 aggagccatt caccatgatg cctacctctc cagtggccta taactcactc ggggcagtga
     2581 ttggcattgc agtgctggga tccctggtgg tggccctggt ggcgctgttc attggctacc
     2641 gccattggca aaaaggcaaa gtgcaccatc acctggcagt ggcctacagc agcgggcggc
     2701 tggacggctc tgagtacgtt atgccagcta acagccacct ggaccgaagc tacagctgta
     2761 gctacagcaa caggaatggc ccaggcccct tctacagtaa agggcccatc tctgaagagg
     2821 ggctgggggc cagtgtggct tccctgagca gtgagaaccc ctacgccacc atccgggacc
     2881 tgcccagcct gctagggagc ccccgggaga gcagctacat ggagatgaaa ggccctccct
     2941 cagggtctcc ccccaggcag ccgcctcagc tccgggacag ccagaggcgg cgacaccccc
     3001 agccagagag agacagtggc acctatgagc agcccagccc cctgacccat gaccgagact
     3061 ctgtgggctc ccggccgcct ctgcctccgg gcctgcctcc tggccactat gactcaccca
     3121 agaacagcca catacctgga cactatgact tgcctccagt acggcatccc ccgtcacccc
     3181 cacttcggtg ccaggaccgt tgaggagcca agatggtgtg cagaggtcag cacaccggtt
     3241 ctttgctgct caaggctaag gacagagccc gctgtaccct gccaggagca gggagaggac
     3301 tggccggccg tgaacatgaa catgtttaat agaggaagtg aatggagagg agatgggagc
     3361 ctggctccca ggttctacca tgggaaacac tggtcagcag gaaacctgtg ttccttttcc
     3421 ccaacccatt gctccccaag gcccccaggg ccctgtatac ataaactggt gggttgaatg
     3481 ttgctggata actctgattt cagattgctg taagaagtgt atattgggta acttttctgt
     3541 gcactcccgg gctaggctct gtgtgtgcgt gcatgcgtgt tttcagaggc gtaccaggca
     3601 ctgatcctgt cctggggcac tcactatata gtggagaggc agcccaaacc cagttaactc
     3661 tagaaatagc gtgactggcc tccctgcatt catttggtac tcccgccaac caaccgcttc
     3721 aaaatacaag ctggttaggt tacccctgcc tgaaagtctc cgtgggtgcc ccatggccct
     3781 tgggctacag tcaaaattgt ccaaggcctt aaaggctttg ctggcctggc ctgcctgtct
     3841 cttcagcctc actctgaact gtgttccctg tcactctgcc ccagtcacac tggcctctac
     3901 gtcctcctat cagccacacg tcttcctact acagggactt ggcacatctg gaatgctctt
     3961 cctcccccac tcaccggtta actcctgctt gtccctcaca ccccgtgttc tctttcacag
     4021 cactggttac tgatgtgttc atgtaccagt tacctgcaga aggcctacag ggtgccaggc
     4081 acctctgtaa tgtgtttttt tttttttagt gtgattattt gattaatctc tgcccccccc
     4141 accagactct taagttccct gaaagcagga atcctgtgtt tatgttcaac actggctccc
     4201 cttggcacat ggtaggcact caataaatgt tcccccgaag gctga
//
LOCUS       XR_004352288            7882 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116762592
            (LOC116762592), transcript variant X1, ncRNA.
ACCESSION   XR_004352288
VERSION     XR_004352288.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7882
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7882
                     /gene="LOC116762592"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762592"
     ncRNA           1..7882
                     /ncRNA_class="lncRNA"
                     /gene="LOC116762592"
                     /product="uncharacterized LOC116762592, transcript variant
                     X1"
                     /db_xref="GeneID:116762592"
ORIGIN      
        1 cggggttagt tactctgcag catgtgggat cttcccagac cagggctcgg gtccgtgtcc
       61 cctgcattag cagattaatt tttaaccagt gcaccaccag ggaagtcctc gtctgtacat
      121 ttttaagacc ttgttttcct atgaattaat tagttcattt gctcagtctc ctaacaaata
      181 tttagagaga gagaaatact tctgtgcatc aaatctctga ttacattgtc tttaatatct
      241 agtggttttg cagaacatgg acacaggtaa gttcttggac tcgggtcagg gtagcaagta
      301 agaacccagg aaagttgttt ttaaatgtgg accaaagtgc agaagggcag taatgaggaa
      361 cctgctcacg attaagcctc actaaatgaa gactctaact gtgagttgcc gtagtggaac
      421 cccactaagg gctgggcacc tacctcacag ccttaaaccc actcctttaa ccctcccatt
      481 aaccccacag tggtagaatt atccccattt tgctgatgag aaagctgatg tacagagaag
      541 tccacgctct gtcatgttcc ttgtgcactt ctactatgtg ccaggcactg ttctaggcat
      601 ttgtgtgaga gcatggacag acgaaaatcc ccgcccttgt ggaactgaca cgaacaagac
      661 aacaaacgag atgagtaagt gaaacatctc atatgtcagg tggtgctaag tgccatgaag
      721 agaaataaag cagagcaggc gtttggggca ggggaggctg cagtttgatg taaggttacc
      781 gggaaaggtt tcagggagaa ggtgacctcc gggcaaagag gggagggagg gggccaagta
      841 gataactggc tcagaaactt gcctgaggtt actaggaagt atcactgggc actggaaggg
      901 ctgtttgtca ggctctaaag ccagggctct catttcatca ggcctctttt ttcaaaaagc
      961 agctctgctg ttctccaagc agggtgtgtg tacaagtctg tccgtctgtc tgtctgtgaa
     1021 cagtgttata ttttcctggg gctgatcctg tgggggccca agcttccctg acagctccca
     1081 gggcctcagg cctcacatta ttggttttca tggaaacttg gcaactttct ccccccaccc
     1141 caccctttgc cctgcaccac attccaatgg ctttatttgt gtgccttgga ggctggccag
     1201 ggctaggcct gggacaggtt gccatggcga tctcccactc ctttcagata gaacttctca
     1261 aggatgttgc ctttgggcct gaaatagttc aggcctgctc tccgccactg caggaagagc
     1321 tgagttagga aacccctttc aatcagcttt tgaacttgca caaacccaac cctgggtgag
     1381 aaagacttct gggggggtgt tctctagggc accccagatt tgggattggg aatggttttc
     1441 cttgggttac tggaataact actatcagtt gttacatacc aggtgctgta ttcagagacc
     1501 tgagacctgc agaaacagaa cagtttttta aaagctcaac tttactgata aatctgcatc
     1561 caataaaatg cacccatttt aagtgcacag ttcaatgaga tttgacaatg tatatacact
     1621 tgggtaatga ccactacaat taagatataa aacttttcca tcacccccac aaagtttctt
     1681 cctgctgctt tgcagttatc ctcccacctc cccaacccct gggcccaggc agccactgat
     1741 ctgctgtctg tcaccatgga ttcattttgc cttttctaga agttcatgta aatagaacca
     1801 tttaatatgt gcacttttgt ggcatgtgtc ttttgttcag catgacgttt ttgagattca
     1861 tctgtgtggt tgcctgttta ttccttttta ttgctggtgc tattgtatgg agtgactgta
     1921 acagagaaca agcctgactc catattggat ctagtccttt agcgctaacc cttgagctct
     1981 gttgcctgtg ctgagtcatg ctgactctgc acctttgtga aagaatgttg cctgtagcct
     2041 gaaatataca agatagccca tcctcaaggc tctgaccttt aaatgtgtaa cacttttcca
     2101 ttcttataaa catgaaaagt tgcagaacag agaataacat ttgttttgtg ggaggtttat
     2161 aggaacaccg tgacctgacc tacagggaca gctgcaggaa caaagggttc cagcaccaag
     2221 aagttcacag caaccagcta cctcctcccc cccacgcccc cagcccaccc tcccctttta
     2281 gtataaaata agcctgaatt ctaacttggg taagctggtt ctttgggaca ctagacttct
     2341 tggtctcctg gctttctgag taaattcact cttccttgtc ccaacagctc gtctcttgac
     2401 ttgctggcct gttgtgtggt gggcagtaca agcttggact ccataacgtg accacagctc
     2461 gtccattgtc ttgcggatag acatctgtgt tgttttccgt ctttagttat tgcaactaaa
     2521 gttgttatgt acatttgtgt ataaatcttg tgtgaacatg tactttaacc tcttctgggt
     2581 aacaccaggg gtggaatggc tgggtcatgt ggtaaatact gtttaacttt agaagaaacc
     2641 gccacatagc atgttttgag gtagcactga ccgggtgcaa ttggtttttg ctcacaggga
     2701 ctagaactag tgcaactgag ctcccctaaa accgagttcc tatgctgggt ttatgattaa
     2761 cctctcagtt caaaactgta ttccctttat tatcccaccc cagtcccctc aggattgagg
     2821 agtatcaaag aaaagcaggg attgaaactg agcaggattc tgtggggcct tcccaggtgc
     2881 aaaagcccct ctgtgtcccg tgtttcttga ttgtagaaaa aggctttagt ctcctaggac
     2941 ttccctgagt tccaaagaac agaatcaagc aattactaat tagggaggtg agggaatgca
     3001 gaaaaaagga aaagcagtct agaaacaata gttcagtgga taaaacagag tcctagttct
     3061 tcctcaaggg atatagataa cgatctgatg catatttttg agttgttctt cagatactga
     3121 gacccccccc cccccccccc ccacacacac actcagaagg atggtgacta cttgctgacc
     3181 acaatcacgt agatcctaga ctggttgcca ccagaaggtt gatgattaag attcctgaaa
     3241 caccatcctg ttacctcatc acaaaccaat cagaagaaag tctgtgagct gcagccctca
     3301 ccccaggtgt ggcctttaaa aaccctcccc tgaacaccat ctgggagttt aggtcttttg
     3361 agtgtgagct gcccattctc cttgcttggt gtcctgcaat aaaggctgca ctctccttta
     3421 ctgcaacctg ctgtcagtag attgactttg ctgtacattg ggcatttgaa aaacaacaaa
     3481 tgcatggaga ggctttctct gatctcccct atctgcctaa agataaatcc tcccaaagga
     3541 actcagatgt cataaatccc ctccctggga atttcgttaa caggggaaga ttcattctta
     3601 tcgtaggaga ggagactgga catccatacc acacccaggt aactttgtca caagctatct
     3661 tatctcccac atattcttct aagagcccat tcatctttcc ccaaaattac atactctccc
     3721 ctaagaggcc tacatcccct tacctctttc cctattaaca cagtatttaa ttctgaattc
     3781 taaagccacc tctttggggt gctcattttt cctgggtatc tcccatgtat acatgagcca
     3841 tacatgttaa tacacttctg tttgcttttt tcttttatgc ttttctctat tttttattac
     3901 aagggtctca gctaagaact cataagtgta aaaggaaaat tatttttcct cccctacaaa
     3961 gtcaagattt tggggaagtt ttgctatgtg atgtgtacta taattgcagg aaaaatatac
     4021 tcatttttgc cttcagaggt gtgtgtgtgt tttaatgtga ttatgtttga aattgatttt
     4081 aagtcttgag tgggttcata gaggctcagt tacttgtaaa taacatgtaa atggagaaac
     4141 agaatcattg agtgagtaat ttgcccaagg tcacacagct ggatccagat atgaactcag
     4201 tttcctgact ccagtgttct ttcccaaccc actgcaccgt ttgctgaggt tccaggaacc
     4261 tgccttgggt gccaagataa gacactgtcc tctgttttgt agttccccat tttttttcag
     4321 tgattccatc tacagatgga tggctggtct acataacttg tgaagtaaac cagaatatgt
     4381 caaaatatcc ctttttaatg taagaattat tttgagctga aggcaattaa gaaatagcaa
     4441 atgcaggaaa agctctctat accttcccca tttctgctta aaggcaggat ataaattttc
     4501 ctttactata agactctgga ctcttatcag cccagagaca aacgttactg taaacaaaca
     4561 aacaaaccat taattttccc ccatgtattt actttcacac agtttgttgc cctttgaagc
     4621 ttaaaacttc tttcttttga cctgccattg ctctacaaat cgattgttct ttgttgaaga
     4681 tgctacataa gcctgagttc taagttacct ccttaaatca ctcatctctg agtttctccc
     4741 atgtttatat gaaatataca tgttgacaaa attctgtttg ttttctcttg ttaatctgtc
     4801 ttttgttaca gagccccaac tgaggaactt aattaagata ggtagaggaa atatttttcc
     4861 tcccctatac ctgacctctg aaattcacac atgtggtgtt tgaatcacag aagacaaaac
     4921 aatatctgcc tgcagaagtc tgattaagaa actcacatcc ctgagtccca gtttacagct
     4981 ctgtctgcat gttgagcttc ccctgcatat gttgctgagg aattggcaat ggcccgggaa
     5041 actcaaagct acggacgcat gagcggcgag tcagaggtgt gctggtgtcc aggccaatgt
     5101 gacaaggacc gatggaccgg tgacttggac ggcattggtt tgggcggcgt ttgaggacac
     5161 agtggggcct gcagacgggg ggctttggtc caagaggggc aacaagatgt gcagtccgga
     5221 gtggttggct gtcggcagat aacatgggag acaccacctc ctggcagccc tcgaagagat
     5281 acaagagggg gccaggaacc ccagaaatga ggcagctggc atcctcctcc ttcacacgtg
     5341 tcagtgttgg accacagtct ctctgttgat gggaccacat ttgtgcacac aagccttaga
     5401 aggaagcccc tgggtgttat tgtggcaatt cttagagatt cctgttcacc catgaatctc
     5461 tttattgggg accatttctg gacgtcatgg tcactgacct cttgactgag aggaattttt
     5521 tctttttcca agaaggaggg aaaagttcct cctgaggggg aaaaaatggt gaaaagaaaa
     5581 ttctagtaaa tggaaaatga tgtggaaggg ccttcttgta tgtgataggt aagtgaatgg
     5641 gctctcaaga tgaggtcaga cttttgggaa attaaggaag ccccatggag gggtggggtg
     5701 ggggaagaga gctggaaaca gggcacaaag ctgagaaccc aggacctgaa ggctccctgc
     5761 ctgccccatg ggtgaccaag ggtgataatt tcaagcctga atttcgagtg atattcaatt
     5821 tttatatgtg ggcctagtat ttgccatagt atttgcagtt aattatgttt ccttctatat
     5881 ttgtgtgtta agatgaatca ctgttgttcc agatactttt ctgagctaag tggagggggg
     5941 cacatgcgaa gtgaggcctg cggagggggt gggagtgggt ctggagaaaa atgattttgc
     6001 ttccgttttt ggattcgtat atatacttgg ataactgcct gtttgactag ggctcgtttg
     6061 gtttggttta tgggtctgcc ttgcttccct gcccaccccc acaccccccc agtgtcttag
     6121 aacaaatctt caccttcctc cagggcaggt gcctatgtgt cgcaggaaaa tggggcacga
     6181 gaggatggtc atgtcccagg tctcgggcaa gtgaccgata gggatggggt aggctgccaa
     6241 gtgagggtcc ttggctttgc acaagtaaga attcaagacc gagccatagt aaagtgaaag
     6301 caagtttatt tagagaggta cacattccat agacagaatg ctgtccttct gagaagggaa
     6361 actcgtccca gggcataggg ccgttttgga aagtgatagc gccccgaaat atgttagttt
     6421 ttatgggctg ggtaatttca taggctaatg agtgggagga ttattccaac tattttggag
     6481 aaggggtggg aatttccaga atttgggcca ccgcccactt ttggcctttt aggtaaacct
     6541 cggaactgtc atggcacctg tgtgtgtgtc acttggttta tgctaatgta ttacaatgag
     6601 tgtataatga ggctcgaggt ctactggaag tagaatcttc cgccatcttg ggcctagtag
     6661 gttctaacca gtttttgtcg aatccctcct gtctcatgtg gggtgatgtt ggccattcaa
     6721 aagccctaaa agggttagga tgcaaacaga aacatgattt actcttccct ctttctccaa
     6781 tcctcagggc tggggaatca atttagggag actgccgcct ctcaaggttt cttctctcta
     6841 ggcagctgag gggaaaccga gagcagtgga gctgcttggt ggcgggaggc cggcaccagg
     6901 agccatcctc tgtcacctgg ggttaactgg ggtagggggt gctcccagcc ctggggctca
     6961 tccccttccc tcttcttaag ttcataagag ctgatgtcaa tttgggctta acctttaact
     7021 ctttccactt cttacttcca gacaaattag ttgatcaata gctgatttga tcctgatcat
     7081 ttagccacag attgaaactt tttccatttc atcagtctca cttttctttt ttttcttttc
     7141 ttcttagttt gggttgaata gacacagctc ttttccttta ttgcatgctt tatttttttg
     7201 tgatttaaaa ctgttctcac cgtgacaatt ccttccagat gcacctgtaa ctttccattc
     7261 ctcattttct caccactttc aaagtaaatg ttatttctac attggttact tttgtaattt
     7321 tgcctcttat tagtgcttcc aagattctca caggtgttat gcttattggt tattatgggg
     7381 ttgacaatgt gtgaacaatt acttgggcac aaggatgtca acacagttga gtaatggact
     7441 gtattgttca ccatggcagg tctcaagtga cctttcacta tagtccttgc catctgttgg
     7501 tggagggaag tgttgacatt cttttttctg gagtttttct tttgtgaatc tatagacatt
     7561 gaaatttaag tggaaaagct tctttataca gattcttctg tggttttaaa agtaattcat
     7621 tatagggggg tggaggaggg atggattggg agtttgggat tagcagatgc aaactattat
     7681 atatagaaca gataaacaac aaggtcctac tgtatagcat atggaactat attcaatatc
     7741 ctgtgatacc ataatggaaa agaatatgaa aacgaatgta tatatatatg tgtaactgag
     7801 tcactttgct gtacagcaga aattaacaac attgtaaatc aattctactt caataaaata
     7861 aaattttaaa ataattcatt at
//
LOCUS       XR_004352289            7760 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116762592
            (LOC116762592), transcript variant X2, ncRNA.
ACCESSION   XR_004352289
VERSION     XR_004352289.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7760
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7760
                     /gene="LOC116762592"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762592"
     ncRNA           1..7760
                     /ncRNA_class="lncRNA"
                     /gene="LOC116762592"
                     /product="uncharacterized LOC116762592, transcript variant
                     X2"
                     /db_xref="GeneID:116762592"
ORIGIN      
        1 cggggttagt tactctgcag catgtgggat cttcccagac cagggctcgg gtccgtgtcc
       61 cctgcattag cagattaatt tttaaccagt gcaccaccag ggaagtcctc gtctgtacat
      121 ttttaagacc ttgttttcct atgaattaat tagttcattt gctcagtctc ctaacaaata
      181 tttagagaga gagaaatact tctgtgcatc aaatctctga ttacattgtc tttaatatct
      241 agtggttttg cagaacatgg acacaggtaa gttcttggac tcgggtcagg gtagcaagta
      301 agaacccagg aaagttgttt ttaaatgtgg accaaagtgc agaagggcag taatgaggaa
      361 cctgctcacg attaagcctc actaaatgaa gactctaact gtgagttgcc gtagtggaac
      421 cccactaagg gctgggcacc tacctcacag ccttaaaccc actcctttaa ccctcccatt
      481 aaccccacag tggtagaatt atccccattt tgctgatgag aaagctgatg tacagagaag
      541 tccacgctct gtcatgttcc ttgtgcactt ctactatgtg ccaggcactg ttctaggcat
      601 ttgtgtgaga gcatggacag acgaaaatcc ccgcccttgt ggaactgaca cgaacaagac
      661 aacaaacgag atgagtaagt gaaacatctc atatgtcagg tggtgctaag tgccatgaag
      721 agaaataaag cagagcaggc gtttggggca ggggaggctg cagtttgatg taaggttacc
      781 gggaaaggtt tcagggagaa ggtgacctcc gggcaaagag gggagggagg gggccaagta
      841 gataactggc tcagaaactt gcctgaggtt actaggaagt atcactgggc actggaaggg
      901 ctgtttgtca ggctctaaag ccagggctct catttcatca ggcctctttt ttcaaaaagc
      961 agctctgctg ttctccaagc agggtgtgtg tacaagtctg tccgtctgtc tgtctgtgaa
     1021 cagtgttata ttttcctggg gctgatcctg tgggggccca agcttccctg acagctccca
     1081 gggcctcagg cctcacatta ttggttttca tggaaacttg gcaactttct ccccccaccc
     1141 caccctttgc cctgcaccac attccaatgg ctttatttgt gtgccttgga ggctggccag
     1201 ggctaggcct gggacaggtt gccatggcga tctcccactc ctttcagata gaacttctca
     1261 aggatgttgc ctttgggcct gaaatagttc aggcctgctc tccgccactg caggaagagc
     1321 tgagttagga aacccctttc aatcagcttt tgaacttgca caaacccaac cctgggtgag
     1381 aaagacttct gggggggtgt tctctagggc accccagatt tgggattggg aatggttttc
     1441 cttgggttac tggaataact actatcagtt gttacatacc aggtgctgta ttcagagacc
     1501 tgagacctgc agaaacagaa cagtttttta aaagctcaac tttactgata aatctgcatc
     1561 caataaaatg cacccatttt aagtgcacag ttcaatgaga tttgacaatg tatatacact
     1621 tgggtaatga ccactacaat taagatataa aacttttcca tcacccccac aaagtttctt
     1681 cctgctgctt tgcagttatc ctcccacctc cccaacccct gggcccaggc agccactgat
     1741 ctgctgtctg tcaccatgga ttcattttgc cttttctaga agttcatgta aatagaacca
     1801 tttaatatgt gcacttttgt ggcatgtgtc ttttgttcag catgacgttt ttgagattca
     1861 tctgtgtggt tgcctgttta ttccttttta ttgctggtgc tattgtatgg agtgactgta
     1921 acagagaaca agcctgactc catattggat ctagtccttt agcgctaacc cttgagctct
     1981 gttgcctgtg ctgagtcatg ctgactctgc acctttgtga aagaatgttg cctgtagcct
     2041 gaaatataca agatagccca tcctcaaggc tctgaccttt aaatgtgtaa cacttttcca
     2101 ttcttataaa catgaaaagt tgcagaacag agaataacat ttgttttgtg ggaggtttat
     2161 aggaacaccg tgacctgacc tacagggaca gctgcaggaa caaagggttc cagcaccaag
     2221 aagttcacag caaccagcta cctcctcccc cccacgcccc cagcccaccc tcccctttta
     2281 gtataaaata agcctgaatt ctaacttggg taagctggtt ctttgggaca ctagacttct
     2341 tggtctcctg gctttctgag taaattcact cttccttgtc ccaacagctc gtctcttgac
     2401 ttgctggcct gttgtgtggt gggcagtaca agcttggact ccataacgtg accacagctc
     2461 gtccattgtc ttgcggatag acatctgtgt tgttttccgt ctttagttat tgcaactaaa
     2521 gttgttatgt acatttgtgt ataaatcttg tgtgaacatg tactttaacc tcttctgggt
     2581 aacaccaggg gtggaatggc tgggtcatgt ggtaaatact gtttaacttt agaagaaacc
     2641 gccacatagc atgttttgag gtagcactga ccgggtgcaa ttggtttttg ctcacaggga
     2701 ctagaactag tgcaactgag ctcccctaaa accgagttcc tatgctgggt ttatgattaa
     2761 cctctcagtt caaaactgta ttccctttat tatcccaccc cagtcccctc aggattgagg
     2821 agtatcaaag aaaagcaggg attgaaactg agcaggattc tgtggggcct tcccaggtgc
     2881 aaaagcccct ctgtgtcccg tgtttcttga ttgtagaaaa aggctttagt ctcctaggac
     2941 ttccctgagt tccaaagaac agaatcaagc aattactaat tagggaggtg agggaatgca
     3001 gaaaaaagga aaagcagtct agaaacaata gttcagtgga taaaacagag tcctagttct
     3061 tcctcaaggg atatagataa cgatctgatg catatttttg agttgttctt cagatactga
     3121 gacccccccc cccccccccc ccacacacac actcagaagg atggtgacta cttgctgacc
     3181 acaatcacgt agatcctaga ctggttgcca ccagaaggtt gatgattaag attcctgaaa
     3241 caccatcctg ttacctcatc acaaaccaat cagaagaaag tctgtgagct gcagccctca
     3301 ccccaggtgt ggcctttaaa aaccctcccc tgaacaccat ctgggagttt aggtcttttg
     3361 agtgtgagct gcccattctc cttgcttggt gtcctgcaat aaaggctgca ctctccttta
     3421 ctgcaacctg ctgtcagtag attgactttg ctgtacattg ggggaagatt cattcttatc
     3481 gtaggagagg agactggaca tccataccac acccaggtaa ctttgtcaca agctatctta
     3541 tctcccacat attcttctaa gagcccattc atctttcccc aaaattacat actctcccct
     3601 aagaggccta catcccctta cctctttccc tattaacaca gtatttaatt ctgaattcta
     3661 aagccacctc tttggggtgc tcatttttcc tgggtatctc ccatgtatac atgagccata
     3721 catgttaata cacttctgtt tgcttttttc ttttatgctt ttctctattt tttattacaa
     3781 gggtctcagc taagaactca taagtgtaaa aggaaaatta tttttcctcc cctacaaagt
     3841 caagattttg gggaagtttt gctatgtgat gtgtactata attgcaggaa aaatatactc
     3901 atttttgcct tcagaggtgt gtgtgtgttt taatgtgatt atgtttgaaa ttgattttaa
     3961 gtcttgagtg ggttcataga ggctcagtta cttgtaaata acatgtaaat ggagaaacag
     4021 aatcattgag tgagtaattt gcccaaggtc acacagctgg atccagatat gaactcagtt
     4081 tcctgactcc agtgttcttt cccaacccac tgcaccgttt gctgaggttc caggaacctg
     4141 ccttgggtgc caagataaga cactgtcctc tgttttgtag ttccccattt tttttcagtg
     4201 attccatcta cagatggatg gctggtctac ataacttgtg aagtaaacca gaatatgtca
     4261 aaatatccct ttttaatgta agaattattt tgagctgaag gcaattaaga aatagcaaat
     4321 gcaggaaaag ctctctatac cttccccatt tctgcttaaa ggcaggatat aaattttcct
     4381 ttactataag actctggact cttatcagcc cagagacaaa cgttactgta aacaaacaaa
     4441 caaaccatta attttccccc atgtatttac tttcacacag tttgttgccc tttgaagctt
     4501 aaaacttctt tcttttgacc tgccattgct ctacaaatcg attgttcttt gttgaagatg
     4561 ctacataagc ctgagttcta agttacctcc ttaaatcact catctctgag tttctcccat
     4621 gtttatatga aatatacatg ttgacaaaat tctgtttgtt ttctcttgtt aatctgtctt
     4681 ttgttacaga gccccaactg aggaacttaa ttaagatagg tagaggaaat atttttcctc
     4741 ccctatacct gacctctgaa attcacacat gtggtgtttg aatcacagaa gacaaaacaa
     4801 tatctgcctg cagaagtctg attaagaaac tcacatccct gagtcccagt ttacagctct
     4861 gtctgcatgt tgagcttccc ctgcatatgt tgctgaggaa ttggcaatgg cccgggaaac
     4921 tcaaagctac ggacgcatga gcggcgagtc agaggtgtgc tggtgtccag gccaatgtga
     4981 caaggaccga tggaccggtg acttggacgg cattggtttg ggcggcgttt gaggacacag
     5041 tggggcctgc agacgggggg ctttggtcca agaggggcaa caagatgtgc agtccggagt
     5101 ggttggctgt cggcagataa catgggagac accacctcct ggcagccctc gaagagatac
     5161 aagagggggc caggaacccc agaaatgagg cagctggcat cctcctcctt cacacgtgtc
     5221 agtgttggac cacagtctct ctgttgatgg gaccacattt gtgcacacaa gccttagaag
     5281 gaagcccctg ggtgttattg tggcaattct tagagattcc tgttcaccca tgaatctctt
     5341 tattggggac catttctgga cgtcatggtc actgacctct tgactgagag gaattttttc
     5401 tttttccaag aaggagggaa aagttcctcc tgagggggaa aaaatggtga aaagaaaatt
     5461 ctagtaaatg gaaaatgatg tggaagggcc ttcttgtatg tgataggtaa gtgaatgggc
     5521 tctcaagatg aggtcagact tttgggaaat taaggaagcc ccatggaggg gtggggtggg
     5581 ggaagagagc tggaaacagg gcacaaagct gagaacccag gacctgaagg ctccctgcct
     5641 gccccatggg tgaccaaggg tgataatttc aagcctgaat ttcgagtgat attcaatttt
     5701 tatatgtggg cctagtattt gccatagtat ttgcagttaa ttatgtttcc ttctatattt
     5761 gtgtgttaag atgaatcact gttgttccag atacttttct gagctaagtg gaggggggca
     5821 catgcgaagt gaggcctgcg gagggggtgg gagtgggtct ggagaaaaat gattttgctt
     5881 ccgtttttgg attcgtatat atacttggat aactgcctgt ttgactaggg ctcgtttggt
     5941 ttggtttatg ggtctgcctt gcttccctgc ccacccccac acccccccag tgtcttagaa
     6001 caaatcttca ccttcctcca gggcaggtgc ctatgtgtcg caggaaaatg gggcacgaga
     6061 ggatggtcat gtcccaggtc tcgggcaagt gaccgatagg gatggggtag gctgccaagt
     6121 gagggtcctt ggctttgcac aagtaagaat tcaagaccga gccatagtaa agtgaaagca
     6181 agtttattta gagaggtaca cattccatag acagaatgct gtccttctga gaagggaaac
     6241 tcgtcccagg gcatagggcc gttttggaaa gtgatagcgc cccgaaatat gttagttttt
     6301 atgggctggg taatttcata ggctaatgag tgggaggatt attccaacta ttttggagaa
     6361 ggggtgggaa tttccagaat ttgggccacc gcccactttt ggccttttag gtaaacctcg
     6421 gaactgtcat ggcacctgtg tgtgtgtcac ttggtttatg ctaatgtatt acaatgagtg
     6481 tataatgagg ctcgaggtct actggaagta gaatcttccg ccatcttggg cctagtaggt
     6541 tctaaccagt ttttgtcgaa tccctcctgt ctcatgtggg gtgatgttgg ccattcaaaa
     6601 gccctaaaag ggttaggatg caaacagaaa catgatttac tcttccctct ttctccaatc
     6661 ctcagggctg gggaatcaat ttagggagac tgccgcctct caaggtttct tctctctagg
     6721 cagctgaggg gaaaccgaga gcagtggagc tgcttggtgg cgggaggccg gcaccaggag
     6781 ccatcctctg tcacctgggg ttaactgggg tagggggtgc tcccagccct ggggctcatc
     6841 cccttccctc ttcttaagtt cataagagct gatgtcaatt tgggcttaac ctttaactct
     6901 ttccacttct tacttccaga caaattagtt gatcaatagc tgatttgatc ctgatcattt
     6961 agccacagat tgaaactttt tccatttcat cagtctcact tttctttttt ttcttttctt
     7021 cttagtttgg gttgaataga cacagctctt ttcctttatt gcatgcttta tttttttgtg
     7081 atttaaaact gttctcaccg tgacaattcc ttccagatgc acctgtaact ttccattcct
     7141 cattttctca ccactttcaa agtaaatgtt atttctacat tggttacttt tgtaattttg
     7201 cctcttatta gtgcttccaa gattctcaca ggtgttatgc ttattggtta ttatggggtt
     7261 gacaatgtgt gaacaattac ttgggcacaa ggatgtcaac acagttgagt aatggactgt
     7321 attgttcacc atggcaggtc tcaagtgacc tttcactata gtccttgcca tctgttggtg
     7381 gagggaagtg ttgacattct tttttctgga gtttttcttt tgtgaatcta tagacattga
     7441 aatttaagtg gaaaagcttc tttatacaga ttcttctgtg gttttaaaag taattcatta
     7501 taggggggtg gaggagggat ggattgggag tttgggatta gcagatgcaa actattatat
     7561 atagaacaga taaacaacaa ggtcctactg tatagcatat ggaactatat tcaatatcct
     7621 gtgataccat aatggaaaag aatatgaaaa cgaatgtata tatatatgtg taactgagtc
     7681 actttgctgt acagcagaaa ttaacaacat tgtaaatcaa ttctacttca ataaaataaa
     7741 attttaaaat aattcattat
//
LOCUS       XM_032649768            3501 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kelch like family member 20 (KLHL20),
            transcript variant X1, mRNA.
ACCESSION   XM_032649768
VERSION     XM_032649768.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3501
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3501
                     /gene="KLHL20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 8 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762595"
     CDS             192..2021
                     /gene="KLHL20"
                     /codon_start=1
                     /product="kelch-like protein 20 isoform X1"
                     /protein_id="XP_032505659.1"
                     /db_xref="GeneID:116762595"
                     /translation="MEGKPMRRCTNIRPGETGMDVTSRCTLGDPNKLPEGVPQPARMP
                     YISDKHPRQTLEVINLLRKHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELA
                     ESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEF
                     LKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDII
                     SSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPL
                     IKSDEECRDLVDEAKNYLLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISS
                     VERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQW
                     SSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRR
                     LGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDM
                     IYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTT
                     YLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVIKMTHCESHIW"
     misc_feature    324..707
                     /gene="KLHL20"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 20 (KLHL20); Region: BTB_POZ_KLHL20_KLEIP;
                     cd18249"
                     /db_xref="CDD:349558"
     misc_feature    378..1949
                     /gene="KLHL20"
                     /note="kelch-like protein; Provisional; Region: PHA03098"
                     /db_xref="CDD:222983"
     misc_feature    1254..1388
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1398..1532
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1539..1676
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1680..1811
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1821..1958
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 tgctgctgaa gtggggcggg gggtgtgggg gaaataagct cgaggagcgg catcctcctt
       61 gcgctacccg aggcagagaa gaggccagag aggaggcggc gggcggagga ggcagaggag
      121 cctactgcag agaaggaagt gtcggagccg gttcggcttt agagtgtggt gaagggtact
      181 tttcatgttg catggaagga aagccaatgc gcaggtgtac caacattcga ccaggagaga
      241 ctggaatgga tgtaacaagc cgctgcaccc ttggagaccc caacaaactg ccagaagggg
      301 ttccccaacc tgcccgcatg ccctatatct cagacaagca ccctcgacaa accttggaag
      361 tgattaacct tctgagaaag caccgggagc tgtgtgatgt ggtgctagtt gtgggcgcta
      421 agaagatata tgcccatcga gtcattttgt cagcctgtag tccctacttc cgagctatgt
      481 ttacaggaga attggcagag agccgtcaga cggaagttgt gatccgagac atagatgaga
      541 gggctatgga actactgata gactttgcat atacctccca gataactgtg gaagagggca
      601 atgttcagac ccttctgcca gctgcttgcc tccttcagct ggcagaaata caggaagcct
      661 gttgtgaatt cttaaagaga caattagatc cttctaactg cctgggcatt cgggcttttg
      721 ctgacacaca ttcatgtcgt gagttgctaa ggatagcaga caagttcact caacataact
      781 ttcaagaggt aatggaaagt gaagagttca tgttgcttcc agccaatcaa ctcattgata
      841 taatatctag tgatgaacta aatgttcgca gtgaagaaca ggtgttcaat gcagtgatgg
      901 cctgggttaa atacagtatt caagaaagac gtcctcagtt accccaggtg ctgcagcatg
      961 ttcgtttgcc tttgcttagt cccaagtttc tggtgggtac tgtaggctct gatcccctca
     1021 tcaaaagtga tgaagaatgc agagacttgg tagatgaggc taaaaactat cttctattgc
     1081 ctcaagaacg accactaatg caaggaccaa ggacaagacc acggaaacct attcgatgtg
     1141 gagaagtact ctttgcagtt ggtggttggt gcagtggaga tgccatttcc agtgttgaac
     1201 gatatgatcc acagaccaat gaatggcgaa tggtagcttc aatgagcaaa aggcgatgtg
     1261 gagttggggt cagtgttctt gatgacctgt tatatgcagt aggaggccat gatgggtcct
     1321 cttatctcaa tagtgttgaa aggtatgacc ccaaaacaaa ccaatggagc agtgatgttg
     1381 ctcctacaag cacctgcagg acaagtgttg gtgtggctgt gcttggaggc tttctctatg
     1441 ctgtgggtgg ccaggatgga gtgtcttgcc tcaacatcgt tgagaggtat gatccgaagg
     1501 agaacaagtg gactcgggtg gcttctatga gtactaggag actaggcgtg gctgtggctg
     1561 tgttaggagg gttcttatac gctgtaggtg gctctgatgg gacatctcca ctcaacacag
     1621 tggagcgtta taatcctcag gaaaacagat ggcacaccat agcccctatg ggaacccgga
     1681 ggaaacacct aggctgtgca gtgtatcagg atatgatcta tgccgtagga ggtagagatg
     1741 acactacaga gcttagcagt gctgagagat acaaccccag aaccaaccag tggtctccag
     1801 tggtggctat gacatcccgc cgtagtggag ttggcctggc agtagtgaat ggacagctca
     1861 tggctgtagg aggttttgat ggcacaacgt acttgaagac cattgaagtt tttgatcctg
     1921 atgccaatac atggaggtta tatggcggga tgaattaccg tcggcttgga ggtggtgtag
     1981 gagttataaa aatgacacat tgtgaatccc atatatggtg accatataga agacagtcat
     2041 gcatttgctc ctctgtattg tggagagctt tgactttgga gctttgtaca gctctagaat
     2101 acactaaaca aattttatta tttgccggtg cctcaacatg tggaaataca gatacattga
     2161 aagtacttca cctgcaagac gccacctttg cacaataatt ttcagttctg tgcagaagaa
     2221 tatttatttt tggttttaat ttatcatggg atttttgttg ctgggttttt ggttttttgt
     2281 tttgggattt agccttcctc ccaccaaaag agaaaaaaag gaaagacaaa aaaaaaaaaa
     2341 aaacatttca agcagtaaaa ccttattttg aagatactga ttaagtttga aactactaat
     2401 aagggaagag gtctatatgg gatctagttg tcagttctaa gcactccatc cacaagactc
     2461 cactacttac agggacttat cagtgacaaa gataggtatg caaggtgtat tagttaggca
     2521 tcattcttgc agtaagcacc agaagacttg aaaatctaaa aaacaaaaca aaggaaacat
     2581 ctcatttaac tagaacaatt caaaaggaat attaaatcaa taagaccagg actcagatgc
     2641 caaagttttc atcagtagaa gctcacatct tgtttccttc cttatggact tgcttgccac
     2701 tataaagtct ttttttcaat tatttccata gagttcctgc tagatctaga gctctgctca
     2761 gtgcctctac aaaaacagta tatgattctc atatactgtc ttgagaatcc cccagtagaa
     2821 tcacgtgtaa ctctccaagt ttttgctcaa aaacgttact gactgaagca actttccttt
     2881 ctatttccta ttgctactaa ggaccagcag ggagaaatgt cctctcccca gcagtgaata
     2941 ctgttatgca atttacactt gatgctcagg cctgctgaag ctgaggctga cctgtaatca
     3001 cagtctccaa gggaatgaat tcttcagttc atgaaatagt atgctaacga gtataaaatc
     3061 agttgaggca tttaattaat aaaatcttgg ttcttttata aaaactatat atcattatcc
     3121 tcattctata aagccactat taccactact ctcaaattgc actttctggt aaaaagttaa
     3181 catttttaag gaaaaaaaag aatacagatt tcagtggtta aagtgttttt gttattgtga
     3241 tcatacacca attttttcca atgtatcttg caggaaaagc tttgaaaaag actttaacca
     3301 caaccataag gaataacctt cttctccctc ccctcactac aaaaatgttt ggcaacattt
     3361 gtgtttacat ttaaagatca tttgcacctt tataaggaaa aaaaataagt atttggtaaa
     3421 caattgttta catgcatcat ttatgctttt ttctagcatg tataactttt taaaataaag
     3481 gtagtactta ccataaaaaa a
//
LOCUS       XM_032649777            2420 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kelch like family member 20 (KLHL20),
            transcript variant X2, mRNA.
ACCESSION   XM_032649777
VERSION     XM_032649777.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2420
                     /gene="KLHL20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 10
                     Proteins, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116762595"
     CDS             140..1969
                     /gene="KLHL20"
                     /codon_start=1
                     /product="kelch-like protein 20 isoform X1"
                     /protein_id="XP_032505668.1"
                     /db_xref="GeneID:116762595"
                     /translation="MEGKPMRRCTNIRPGETGMDVTSRCTLGDPNKLPEGVPQPARMP
                     YISDKHPRQTLEVINLLRKHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELA
                     ESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEF
                     LKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDII
                     SSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPL
                     IKSDEECRDLVDEAKNYLLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISS
                     VERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQW
                     SSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRR
                     LGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDM
                     IYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTT
                     YLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVIKMTHCESHIW"
     misc_feature    272..655
                     /gene="KLHL20"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 20 (KLHL20); Region: BTB_POZ_KLHL20_KLEIP;
                     cd18249"
                     /db_xref="CDD:349558"
     misc_feature    326..1897
                     /gene="KLHL20"
                     /note="kelch-like protein; Provisional; Region: PHA03098"
                     /db_xref="CDD:222983"
     misc_feature    1202..1336
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1346..1480
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1487..1624
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1628..1759
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1769..1906
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 gagccggtag gttagcagcc ttagagtagg ggacagtgga cagcacccag gactcgcttt
       61 gcaaatctgt ggtcccaagt tgccgagctg cccattgggt tcggctttag agtgtggtga
      121 agggtacttt tcatgttgca tggaaggaaa gccaatgcgc aggtgtacca acattcgacc
      181 aggagagact ggaatggatg taacaagccg ctgcaccctt ggagacccca acaaactgcc
      241 agaaggggtt ccccaacctg cccgcatgcc ctatatctca gacaagcacc ctcgacaaac
      301 cttggaagtg attaaccttc tgagaaagca ccgggagctg tgtgatgtgg tgctagttgt
      361 gggcgctaag aagatatatg cccatcgagt cattttgtca gcctgtagtc cctacttccg
      421 agctatgttt acaggagaat tggcagagag ccgtcagacg gaagttgtga tccgagacat
      481 agatgagagg gctatggaac tactgataga ctttgcatat acctcccaga taactgtgga
      541 agagggcaat gttcagaccc ttctgccagc tgcttgcctc cttcagctgg cagaaataca
      601 ggaagcctgt tgtgaattct taaagagaca attagatcct tctaactgcc tgggcattcg
      661 ggcttttgct gacacacatt catgtcgtga gttgctaagg atagcagaca agttcactca
      721 acataacttt caagaggtaa tggaaagtga agagttcatg ttgcttccag ccaatcaact
      781 cattgatata atatctagtg atgaactaaa tgttcgcagt gaagaacagg tgttcaatgc
      841 agtgatggcc tgggttaaat acagtattca agaaagacgt cctcagttac cccaggtgct
      901 gcagcatgtt cgtttgcctt tgcttagtcc caagtttctg gtgggtactg taggctctga
      961 tcccctcatc aaaagtgatg aagaatgcag agacttggta gatgaggcta aaaactatct
     1021 tctattgcct caagaacgac cactaatgca aggaccaagg acaagaccac ggaaacctat
     1081 tcgatgtgga gaagtactct ttgcagttgg tggttggtgc agtggagatg ccatttccag
     1141 tgttgaacga tatgatccac agaccaatga atggcgaatg gtagcttcaa tgagcaaaag
     1201 gcgatgtgga gttggggtca gtgttcttga tgacctgtta tatgcagtag gaggccatga
     1261 tgggtcctct tatctcaata gtgttgaaag gtatgacccc aaaacaaacc aatggagcag
     1321 tgatgttgct cctacaagca cctgcaggac aagtgttggt gtggctgtgc ttggaggctt
     1381 tctctatgct gtgggtggcc aggatggagt gtcttgcctc aacatcgttg agaggtatga
     1441 tccgaaggag aacaagtgga ctcgggtggc ttctatgagt actaggagac taggcgtggc
     1501 tgtggctgtg ttaggagggt tcttatacgc tgtaggtggc tctgatggga catctccact
     1561 caacacagtg gagcgttata atcctcagga aaacagatgg cacaccatag cccctatggg
     1621 aacccggagg aaacacctag gctgtgcagt gtatcaggat atgatctatg ccgtaggagg
     1681 tagagatgac actacagagc ttagcagtgc tgagagatac aaccccagaa ccaaccagtg
     1741 gtctccagtg gtggctatga catcccgccg tagtggagtt ggcctggcag tagtgaatgg
     1801 acagctcatg gctgtaggag gttttgatgg cacaacgtac ttgaagacca ttgaagtttt
     1861 tgatcctgat gccaatacat ggaggttata tggcgggatg aattaccgtc ggcttggagg
     1921 tggtgtagga gttataaaaa tgacacattg tgaatcccat atatggtgac catatagaag
     1981 acagtcatgc atttgctcct ctgtattgtg gagagctttg actttggagc tttgtacagc
     2041 tctagaatac actaaacaaa ttttattatt tgccggtgcc tcaacatgtg gaaatacaga
     2101 tacattgaaa gtacttcacc tgcaagacgc cacctttgca caataatttt cagttctgtg
     2161 cagaagaata tttatttttg gttttaattt atcatgggat ttttgttgct gggtttttgg
     2221 ttttttgttt tgggatttag ccttcctccc accaaaagag aaaaaaagga aagacaaaaa
     2281 aaaaaaaaaa acatttcaag cagtaaaacc ttattttgaa gatactgatt aagtttgaaa
     2341 ctactaataa gggaagaggt ctatatggga tctagttgtc agttctaagc actccatcca
     2401 caagactcca ctacttacag
//
LOCUS       XM_032649785            2492 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kelch like family member 20 (KLHL20),
            transcript variant X3, mRNA.
ACCESSION   XM_032649785
VERSION     XM_032649785.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2492
                     /gene="KLHL20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762595"
     CDS             188..1963
                     /gene="KLHL20"
                     /codon_start=1
                     /product="kelch-like protein 20 isoform X2"
                     /protein_id="XP_032505676.1"
                     /db_xref="GeneID:116762595"
                     /translation="MDVTSRCTLGDPNKLPEGVPQPARMPYISDKHPRQTLEVINLLR
                     KHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAME
                     LLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFAD
                     THSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM
                     AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYL
                     LLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMS
                     KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAV
                     LGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGS
                     DGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAER
                     YNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLY
                     GGMNYRRLGGGVGVIKMTHCESHIW"
     misc_feature    266..649
                     /gene="KLHL20"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 20 (KLHL20); Region: BTB_POZ_KLHL20_KLEIP;
                     cd18249"
                     /db_xref="CDD:349558"
     misc_feature    320..1891
                     /gene="KLHL20"
                     /note="kelch-like protein; Provisional; Region: PHA03098"
                     /db_xref="CDD:222983"
     misc_feature    1196..1330
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1340..1474
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1481..1618
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1622..1753
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1763..1900
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 acttcctgct gctgaagtgg ggcggggggt gtgggggaaa taagctcgag gagcggcatc
       61 ctccttgcgc tacccgaggc agagaagagg ccagagagga ggcggcgggc ggaggaggca
      121 gaggagccta ctgcagagaa ggaagtgtcg gagccggtgt accaacattc gaccaggaga
      181 gactggaatg gatgtaacaa gccgctgcac ccttggagac cccaacaaac tgccagaagg
      241 ggttccccaa cctgcccgca tgccctatat ctcagacaag caccctcgac aaaccttgga
      301 agtgattaac cttctgagaa agcaccggga gctgtgtgat gtggtgctag ttgtgggcgc
      361 taagaagata tatgcccatc gagtcatttt gtcagcctgt agtccctact tccgagctat
      421 gtttacagga gaattggcag agagccgtca gacggaagtt gtgatccgag acatagatga
      481 gagggctatg gaactactga tagactttgc atatacctcc cagataactg tggaagaggg
      541 caatgttcag acccttctgc cagctgcttg cctccttcag ctggcagaaa tacaggaagc
      601 ctgttgtgaa ttcttaaaga gacaattaga tccttctaac tgcctgggca ttcgggcttt
      661 tgctgacaca cattcatgtc gtgagttgct aaggatagca gacaagttca ctcaacataa
      721 ctttcaagag gtaatggaaa gtgaagagtt catgttgctt ccagccaatc aactcattga
      781 tataatatct agtgatgaac taaatgttcg cagtgaagaa caggtgttca atgcagtgat
      841 ggcctgggtt aaatacagta ttcaagaaag acgtcctcag ttaccccagg tgctgcagca
      901 tgttcgtttg cctttgctta gtcccaagtt tctggtgggt actgtaggct ctgatcccct
      961 catcaaaagt gatgaagaat gcagagactt ggtagatgag gctaaaaact atcttctatt
     1021 gcctcaagaa cgaccactaa tgcaaggacc aaggacaaga ccacggaaac ctattcgatg
     1081 tggagaagta ctctttgcag ttggtggttg gtgcagtgga gatgccattt ccagtgttga
     1141 acgatatgat ccacagacca atgaatggcg aatggtagct tcaatgagca aaaggcgatg
     1201 tggagttggg gtcagtgttc ttgatgacct gttatatgca gtaggaggcc atgatgggtc
     1261 ctcttatctc aatagtgttg aaaggtatga ccccaaaaca aaccaatgga gcagtgatgt
     1321 tgctcctaca agcacctgca ggacaagtgt tggtgtggct gtgcttggag gctttctcta
     1381 tgctgtgggt ggccaggatg gagtgtcttg cctcaacatc gttgagaggt atgatccgaa
     1441 ggagaacaag tggactcggg tggcttctat gagtactagg agactaggcg tggctgtggc
     1501 tgtgttagga gggttcttat acgctgtagg tggctctgat gggacatctc cactcaacac
     1561 agtggagcgt tataatcctc aggaaaacag atggcacacc atagccccta tgggaacccg
     1621 gaggaaacac ctaggctgtg cagtgtatca ggatatgatc tatgccgtag gaggtagaga
     1681 tgacactaca gagcttagca gtgctgagag atacaacccc agaaccaacc agtggtctcc
     1741 agtggtggct atgacatccc gccgtagtgg agttggcctg gcagtagtga atggacagct
     1801 catggctgta ggaggttttg atggcacaac gtacttgaag accattgaag tttttgatcc
     1861 tgatgccaat acatggaggt tatatggcgg gatgaattac cgtcggcttg gaggtggtgt
     1921 aggagttata aaaatgacac attgtgaatc ccatatatgg tgaccatata gaagacagtc
     1981 atgcatttgc tcctctgtat tgtggagagc tttgactttg gagctttgta cagctctaga
     2041 atacactaaa caaattttat tatttgccgg tgcctcaaca tgtggaaata cagatacatt
     2101 gaaagtactt cacctgcaag acgccacctt tgcacaataa ttttcagttc tgtgcagaag
     2161 aatatttatt tttggtttta atttatcatg ggatttttgt tgctgggttt ttggtttttt
     2221 gttttgggat ttagccttcc tcccaccaaa agagaaaaaa aggaaagaca aaaaaaaaaa
     2281 aaaaacattt caagcagtaa aaccttattt tgaagatact gattaagttt gaaactacta
     2341 ataagggaag aggtctatat gggatctagt tgtcagttct aagcactcca tccacaagac
     2401 tccactactt acagggactt atcagtgaca aagataggta tgcaaggtgt attagttagg
     2461 catcattctt gcagtaagca ccagaagact tg
//
LOCUS       XM_032649794            2523 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kelch like family member 20 (KLHL20),
            transcript variant X4, mRNA.
ACCESSION   XM_032649794
VERSION     XM_032649794.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2523
                     /gene="KLHL20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 1 Protein, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762595"
     CDS             297..2072
                     /gene="KLHL20"
                     /codon_start=1
                     /product="kelch-like protein 20 isoform X2"
                     /protein_id="XP_032505685.1"
                     /db_xref="GeneID:116762595"
                     /translation="MDVTSRCTLGDPNKLPEGVPQPARMPYISDKHPRQTLEVINLLR
                     KHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAME
                     LLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFAD
                     THSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM
                     AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYL
                     LLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMS
                     KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAV
                     LGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGS
                     DGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAER
                     YNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLY
                     GGMNYRRLGGGVGVIKMTHCESHIW"
     misc_feature    375..758
                     /gene="KLHL20"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 20 (KLHL20); Region: BTB_POZ_KLHL20_KLEIP;
                     cd18249"
                     /db_xref="CDD:349558"
     misc_feature    429..2000
                     /gene="KLHL20"
                     /note="kelch-like protein; Provisional; Region: PHA03098"
                     /db_xref="CDD:222983"
     misc_feature    1305..1439
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1449..1583
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1590..1727
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1731..1862
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1872..2009
                     /gene="KLHL20"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 gaagtggggc ggggggtgtg ggggaaataa gctcgaggag cggcatcctc cttgcgctac
       61 ccgaggcaga gaagaggcca gagaggaggc ggcgggcgga ggaggcagag gagcctactg
      121 cagagaagga agtgtcggag ccggttcggc tttagagtgt ggtgaagggt acttttcatg
      181 ttgcatggaa ggaaagccaa tgcgcagtgg cagcaagtga cctgctcccc caaatcccag
      241 cttcacagaa aacagaggcc atcaggtgta ccaacattcg accaggagag actggaatgg
      301 atgtaacaag ccgctgcacc cttggagacc ccaacaaact gccagaaggg gttccccaac
      361 ctgcccgcat gccctatatc tcagacaagc accctcgaca aaccttggaa gtgattaacc
      421 ttctgagaaa gcaccgggag ctgtgtgatg tggtgctagt tgtgggcgct aagaagatat
      481 atgcccatcg agtcattttg tcagcctgta gtccctactt ccgagctatg tttacaggag
      541 aattggcaga gagccgtcag acggaagttg tgatccgaga catagatgag agggctatgg
      601 aactactgat agactttgca tatacctccc agataactgt ggaagagggc aatgttcaga
      661 cccttctgcc agctgcttgc ctccttcagc tggcagaaat acaggaagcc tgttgtgaat
      721 tcttaaagag acaattagat ccttctaact gcctgggcat tcgggctttt gctgacacac
      781 attcatgtcg tgagttgcta aggatagcag acaagttcac tcaacataac tttcaagagg
      841 taatggaaag tgaagagttc atgttgcttc cagccaatca actcattgat ataatatcta
      901 gtgatgaact aaatgttcgc agtgaagaac aggtgttcaa tgcagtgatg gcctgggtta
      961 aatacagtat tcaagaaaga cgtcctcagt taccccaggt gctgcagcat gttcgtttgc
     1021 ctttgcttag tcccaagttt ctggtgggta ctgtaggctc tgatcccctc atcaaaagtg
     1081 atgaagaatg cagagacttg gtagatgagg ctaaaaacta tcttctattg cctcaagaac
     1141 gaccactaat gcaaggacca aggacaagac cacggaaacc tattcgatgt ggagaagtac
     1201 tctttgcagt tggtggttgg tgcagtggag atgccatttc cagtgttgaa cgatatgatc
     1261 cacagaccaa tgaatggcga atggtagctt caatgagcaa aaggcgatgt ggagttgggg
     1321 tcagtgttct tgatgacctg ttatatgcag taggaggcca tgatgggtcc tcttatctca
     1381 atagtgttga aaggtatgac cccaaaacaa accaatggag cagtgatgtt gctcctacaa
     1441 gcacctgcag gacaagtgtt ggtgtggctg tgcttggagg ctttctctat gctgtgggtg
     1501 gccaggatgg agtgtcttgc ctcaacatcg ttgagaggta tgatccgaag gagaacaagt
     1561 ggactcgggt ggcttctatg agtactagga gactaggcgt ggctgtggct gtgttaggag
     1621 ggttcttata cgctgtaggt ggctctgatg ggacatctcc actcaacaca gtggagcgtt
     1681 ataatcctca ggaaaacaga tggcacacca tagcccctat gggaacccgg aggaaacacc
     1741 taggctgtgc agtgtatcag gatatgatct atgccgtagg aggtagagat gacactacag
     1801 agcttagcag tgctgagaga tacaacccca gaaccaacca gtggtctcca gtggtggcta
     1861 tgacatcccg ccgtagtgga gttggcctgg cagtagtgaa tggacagctc atggctgtag
     1921 gaggttttga tggcacaacg tacttgaaga ccattgaagt ttttgatcct gatgccaata
     1981 catggaggtt atatggcggg atgaattacc gtcggcttgg aggtggtgta ggagttataa
     2041 aaatgacaca ttgtgaatcc catatatggt gaccatatag aagacagtca tgcatttgct
     2101 cctctgtatt gtggagagct ttgactttgg agctttgtac agctctagaa tacactaaac
     2161 aaattttatt atttgccggt gcctcaacat gtggaaatac agatacattg aaagtacttc
     2221 acctgcaaga cgccaccttt gcacaataat tttcagttct gtgcagaaga atatttattt
     2281 ttggttttaa tttatcatgg gatttttgtt gctgggtttt tggttttttg ttttgggatt
     2341 tagccttcct cccaccaaaa gagaaaaaaa ggaaagacaa aaaaaaaaaa aaaacatttc
     2401 aagcagtaaa accttatttt gaagatactg attaagtttg aaactactaa taagggaaga
     2461 ggtctatatg ggatctagtt gtcagttcta agcactccat ccacaagact ccactactta
     2521 cag
//
LOCUS       XR_004352296             635 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116762609
            (LOC116762609), ncRNA.
ACCESSION   XR_004352296
VERSION     XR_004352296.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..635
                     /gene="LOC116762609"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116762609"
     ncRNA           1..635
                     /ncRNA_class="lncRNA"
                     /gene="LOC116762609"
                     /product="uncharacterized LOC116762609"
                     /db_xref="GeneID:116762609"
ORIGIN      
        1 agccacctac agcgtataag aaccctccta acacagccac agccacgcct agtctcctag
       61 tactcataga agccacccga gtccacttgt tctccttcgg atcatacctg cgcctgtact
      121 gaattctaca atatccaaca tgacattcag gatcagaaaa cattttgaag aaattacatt
      181 tttcataagt gctgtggagt cttcatgaat agctgtcacc atgcggacta gcctcttgtc
      241 tttccatgta agaagaatcg cttctccctt ccataagaat gtcatttctc ccctctgtag
      301 actttttaaa atttctcctt taattggttt ggtagaccat gattctctct tatagtccca
      361 caaactctgg ttttattttt caacaatatt tcagatgtgg acacactgtt gtaataattg
      421 tcttggtaaa tatggtgcca tgaaccaaga taaagttgta tgactgataa ttttgtttct
      481 tgcagtttct ttccttcacc tgtttaaatt tcaagtttgc atgtataccc agtttcactt
      541 tagctaacca tcctgagcaa aactccatat tttgtaagtt ttctggaatt atacgttttg
      601 aatctgagtc gtcctctcca ctttatcatt gcctc
//
LOCUS       XM_032649813             542 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus thyroid stimulating hormone subunit beta
            (TSHB), mRNA.
ACCESSION   XM_032649813
VERSION     XM_032649813.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..542
                     /gene="TSHB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, 18 Proteins"
                     /db_xref="GeneID:116762615"
     CDS             47..463
                     /gene="TSHB"
                     /codon_start=1
                     /product="thyrotropin subunit beta"
                     /protein_id="XP_032505704.1"
                     /db_xref="GeneID:116762615"
                     /translation="MTAIFLMSMFFGLACGQAMAFCIPTEYMMHVERKECAYCLTINT
                     TICAGYCMTRDFNGKLFLPKYALSQDVCTYRDFMYKTVEIPGCPRHVTPYFSYPVAIS
                     CKCGKCNTDYSDCIHEAIKTNYCTKPQKSYVVGFSI"
     misc_feature    98..424
                     /gene="TSHB"
                     /note="Glycoprotein hormone beta chain homologues; Region:
                     GHB; smart00068"
                     /db_xref="CDD:214502"
     misc_feature    order(110..112,185..187,197..199,260..262,353..355,
                     359..361)
                     /gene="TSHB"
                     /note="cysteine knot motif; other site"
                     /db_xref="CDD:200450"
     misc_feature    order(131..133,140..142,182..223,257..262,368..370,
                     374..376,383..400)
                     /gene="TSHB"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:200450"
     misc_feature    order(221..223,374..379,386..388,392..400)
                     /gene="TSHB"
                     /note="receptor binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:200450"
ORIGIN      
        1 tctagtctgg gtcattacag catcagctcc ccaatgcaaa gtaagcatga ctgctatctt
       61 cctgatgtcc atgttttttg gccttgcatg tgggcaagcg atggcttttt gtattccaac
      121 tgagtatatg atgcatgtcg aaaggaaaga gtgtgcttac tgcctaacca tcaacactac
      181 catctgtgct ggatattgta tgacacggga cttcaatggc aagctgtttc ttcccaaata
      241 tgctctgtcc caggatgttt gtacatatag agacttcatg tacaagactg tagaaatacc
      301 aggatgccca cgccatgtta ctccttattt ctcctaccct gtagctataa gctgtaagtg
      361 tggcaagtgt aatactgact atagtgattg tatacatgaa gccatcaaaa caaactactg
      421 taccaaacct cagaagtcct atgtggtggg attttctatc taacttcaat tgcgatgtaa
      481 tttgcaattt ggttaaatgt gtttacctgg aataaaacta ataaaatacc aaaatatttc
      541 ac
//
LOCUS       XM_032649822            5570 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus isoleucyl-tRNA synthetase 2,
            mitochondrial (IARS2), transcript variant X1, mRNA.
ACCESSION   XM_032649822
VERSION     XM_032649822.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5570
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5570
                     /gene="IARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 31 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762623"
     CDS             122..3160
                     /gene="IARS2"
                     /codon_start=1
                     /product="isoleucine--tRNA ligase, mitochondrial isoform
                     X1"
                     /protein_id="XP_032505713.1"
                     /db_xref="GeneID:116762623"
                     /translation="MRCGLRPRGPGAAALAVARNLWVPPRLPRRPGWRGATRRLLVRS
                     VTGASNQLQNSSNGSYRDTVLLPQTSFPMKLLGRQQPDTELGVQQKCGFLELYSWQRE
                     RKVKTEFCLHDGPPYANGDPHVGHALNKILKDIANRYHMMRGSKIHFVPGWDCHGLPI
                     EIKVLSELGGKAQNLSAMEIREKARSFAKAAIEKQKSAFIRWGIMADWNNCYYTFDGR
                     YEARQLRIFYEMYDKGLIYRSYKPVFWSPSSRTALAEAELEYNPEHVSCSVYVKFPLL
                     KPSPKLASLIDGSSPVSFLVWTTQPWTIPANQAVCYMPESKYAVVKCSKSGDLYVLAA
                     DKVTSVASTLETTFEVISTFSGVDLEDGTCAHPFISERVSPLLPASHVTMTKGTGLVH
                     TAPAHGMEDYSVASQHSLSMDCLVNEDGVFTDAAGPELQNKAVLEEGTDAVIKMLQAA
                     KNLLKEEKLVHSYPYDWRTKKPVVIRASKQWFVNIMDIKTTAKELLKKVKFIPGSALN
                     AMVEMMDRRPYWCISRQRVWGVPIPVFHHKTKDEFLINSQTIEHIIKLVEEHGSDIWW
                     TLPPEQLLPKEVLSQVGGPDALEYVPGQDILDIWFDSGTSWSYVLPGTDQRADLYLEG
                     KDQLGGWFQSSLLTSVAARNKSPFKTVVVHGFTLGEKGEKMSKSLGNVTDPDVVINGG
                     QDQSKEPPYGADVLRWWVAESNVFTEVIISPFVLNAARDDINKLRNTLRFLLGNVAGF
                     NPETDSVPVNNMYFIDQYMLHLLQDLANKITDSYKQYDFGKVVRLLRAFYTRELSNFY
                     FSIIKDRLYCENADDPKRRSCQTALAEILDVMVRSFAPILPHLAEEVFQYVPYIKEPK
                     SVFRTGWIRTSSIWKKPGLEEAIESACAMRDSFLGSIPGRNAAEYEVIIVIEPGLLFE
                     IIEMLQAEETSSTSQLNELMMASQTTLLSQEPRAVTADVTELRGTFLINLEGGDIREE
                     SSYKVIVMPTTKEKCPRCWKYTAESSDTLCPRCAEVVRGK"
     misc_feature    299..3154
                     /gene="IARS2"
                     /note="Isoleucyl-tRNA synthetase [Translation, ribosomal
                     structure and biogenesis]; Region: IleS; COG0060"
                     /db_xref="CDD:439830"
ORIGIN      
        1 ccccgcgctt gcgcactcct gctaaggctc gcgcaggtgc tctggtctcc ctcttcccca
       61 gagccgggcg ggaagctagg ccttggcgtc tctccggagc ctgggtttgg cctggcccgc
      121 catgcgttgc gggctgcgcc ctcgcgggcc gggagcagcg gccctggccg tggcccggaa
      181 tttgtgggtg ccgccccgcc ttcctcgtcg gcctggctgg cgaggggcga cgaggaggct
      241 tttggtgcgg tcagtcaccg gggccagtaa ccagctgcag aattcgagta atggcagcta
      301 tcgggacacg gtgttgctgc cgcagaccag cttccccatg aagctgctgg gccgccagca
      361 gcccgacacg gagctggggg tccaacagaa atgtggattt ttggaacttt attcatggca
      421 aagagaaaga aaagtgaaga cagagttttg tcttcacgat ggacctcctt atgcaaatgg
      481 tgaccctcat gttggacatg ctttaaataa gattttgaaa gatatagcca accgatacca
      541 tatgatgaga ggttccaaaa tacattttgt gccaggctgg gattgtcatg gcttacccat
      601 tgaaataaaa gtattatcag aacttggtgg aaaagctcag aatctttcag ctatggaaat
      661 tagagagaaa gctagatcat ttgccaaggc agctattgag aaacaaaaat cggcatttat
      721 tcgttgggga ataatggcag attggaataa ttgctactat acatttgatg gacgatatga
      781 agccagacag ttgagaattt tctatgaaat gtatgataag ggcttgattt atcgatctta
      841 taaacctgtg ttttggtctc cctcatcaag gactgcattg gctgaagcag aacttgaata
      901 taatccagag catgtcagtt gctcagtata tgtaaaattt cctctcttga aaccttctcc
      961 taagttggcg tctcttatag atggttcatc tcctgttagt ttcttagtct ggaccaccca
     1021 gccttggaca attccagcca atcaggctgt ttgttatatg ccagaatcaa agtatgctgt
     1081 cgtgaagtgt tccaaatctg gagacttata cgttttagct gcagataaag taacatctgt
     1141 tgcttctact ttggaaacaa catttgaggt tatttcaaca ttttctggtg ttgacttgga
     1201 agatggtact tgtgctcatc ctttcatttc tgagagggtg tctcctcttt tacctgccag
     1261 tcatgtgacc atgacaaaag gaacagggtt ggttcacaca gccccagctc atggtatgga
     1321 agattacagt gtagcttctc aacacagctt gtccatggat tgtttagtga atgaagatgg
     1381 agtctttaca gatgctgcgg gtcctgaact gcaaaacaaa gctgttcttg aagagggaac
     1441 agatgcggtt ataaagatgc ttcaggctgc aaagaatttg ttgaaagagg aaaaattggt
     1501 acacagctat ccctatgact ggaggactaa gaaaccagta gttattcgtg ccagcaagca
     1561 gtggtttgta aatatcatgg atattaagac tacagccaag gaattgttaa aaaaagtgaa
     1621 atttattcct ggatcagcac tgaatgccat ggttgaaatg atggacaggc ggccatattg
     1681 gtgtatatca aggcaaagag tttggggtgt tccaattcct gtgtttcatc ataagacaaa
     1741 agatgaattc ttgatcaaca gccagactat tgagcatatt attaaactag tggaagagca
     1801 tggcagtgat atctggtgga ctcttccccc ggagcagctt cttccaaaag aagtcttatc
     1861 tcaggttggt ggtcctgatg ctttggagta tgtgccaggt caggatattt tggacatctg
     1921 gtttgacagt ggaacttcat ggtcttatgt tcttccaggt actgaccaaa gagcagattt
     1981 gtacttggaa ggaaaagacc agcttggggg ttggtttcag tcttccttgt taacaagtgt
     2041 ggcagcaagg aataaatcac cttttaagac agtggttgtt catggattta cccttggaga
     2101 aaagggagaa aagatgtcca agtctctcgg gaatgtcact gatcctgatg ttgtcattaa
     2161 tggaggacaa gatcaaagca aagagcctcc ctatggtgct gatgtccttc gctggtgggt
     2221 cgctgagtcc aatgtcttca ctgaagtgat aattagtcca tttgtactga atgctgccag
     2281 agatgatatt aacaagctta ggaatactct ccgctttctt ttgggaaatg tggctggttt
     2341 caacccagaa acagattctg tccctgttaa caatatgtat ttcatagacc agtatatgct
     2401 acacttactg caggatttag caaacaagat taccgattca tataagcagt atgactttgg
     2461 aaaagttgtt cggctattac gagcatttta taccagagaa ctctccaact tttatttcag
     2521 cataatcaaa gataggcttt attgtgaaaa tgcggatgat cccaaacgac gctcctgtca
     2581 gactgcctta gccgaaattt tggatgtaat ggttcgttct tttgctccca ttcttcctca
     2641 cttggctgaa gaggtattcc agtacgtacc ttacattaaa gaacccaaga gtgtttttcg
     2701 tactggatgg attagaacca gttctatctg gaagaagcct ggactggaag aagcaataga
     2761 gagtgcgtgt gcgatgagag attcatttct tggaagcatc cctggcagaa atgcagctga
     2821 gtatgaggtt atcattgtga ttgagcctgg actgcttttt gagataatag aaatgctaca
     2881 ggctgaggag acttccagca cctctcagct gaatgaatta atgatggcgt cccagacaac
     2941 tttgctctct caggaaccac gagcagtgac tgcagatgtc actgagctta gagggacatt
     3001 tctaatcaac ctagaaggtg gtgatattcg tgaagagtct tcatataaag taattgtcat
     3061 gccaactacc aaggaaaaat gccctcgctg ttggaagtac accgctgagt catcagacac
     3121 actctgtccg cgatgcgcag aagtcgtgag agggaagtaa cacctcgctg tgtgttgagg
     3181 gctttctgag caagaacttc ctgacgggac tgcctggggg tttaggtgga ttgttcacag
     3241 cactgcaaag aaatccaaga tttaggtaat gagtggaaga gtaagtgata gaggatgaga
     3301 gtcagagtta gagctacaag ttttttctgt aactaaataa aaataacgtg tatatacaca
     3361 tggaaaaata tacctatgca gatggatcca caatggactt cctcagaaca tagacactga
     3421 aaatgcttgc ctacaaatgt ggctcagcag aaaatgtttt atattttatc agtcttcttg
     3481 actcagtatt taagttctat aatgtctaaa aataaaggcc cctgggaaat tactgactga
     3541 tggtggtgca aaagttgtga atatccagta aaaaacctgt ggtcttgaag gggaatggca
     3601 gaggggtgtc tcgcttaaga gatgacaaga gtaatttcac tccgccttaa cagcacgcac
     3661 cgaccttttc agaacagcta gtttttgggt tgcctcggaa gcgaagacat caccaagttt
     3721 gttattctcc tgtaagagcg gaaagtatct taatacttat atttataaat gttaaggaaa
     3781 caacatgaaa gctgaaaatt tatttcacta atacacataa aagttcacta caatgaacaa
     3841 acacagaaaa tagcagtata tacagaattt gactacttac aatacattac agtagataat
     3901 agggcatttt ataaacaatt cagtactgga ttaaaatctt tccaaggatg gttaattctg
     3961 tttagcagaa atacagcaaa tccattcctg tcagggtgag agagggcttt cactgttggt
     4021 atcgagtact ttaaaaatat ttgtccctta taagtgaaat gaaccacagc aactgctaag
     4081 tgaacttact attccaggta tgctgagtgt tattaaatct gagttttctg tgattttgaa
     4141 ctgtaatcaa tttctttttt aaagaaagca atttaaattg aagtgtttac ttcgacctta
     4201 gcttaatttt tataacaaag gtgaaacact tttctccata cctcattttt ctttttgcaa
     4261 aagcatgaac catttagaag cttggtgtgc tatattcctc ttcatttgca tttatcctgt
     4321 ctcttctagt tctacatcta aatataacct gtaatgtaga atttatgatt atttgaacgc
     4381 ttttgttttc ctttgcatta tacaacagaa tttaacaagg tataaatgcc tatttaatgt
     4441 tcatgaggaa aggtgtattg gggggttggc ggtgggagta gatctaagaa gacactactc
     4501 gctggttatc ggtttcccac cagtaactgc agtatgtgta acatacctgt ttcagaaact
     4561 gtccattctg tttcgttatt tgtggctctt catggttaca caatgcatac acaggtattt
     4621 attttccttt cctctatcag atttatttta aaagccctta atgaagtagt aaaatattta
     4681 actgcttttt ttaaccatac aactgagaat tcaattataa aattctttga atggcaaagt
     4741 ttaggattat aaatctaact agagactcga tgttatggtt ctaggagcca tatttcagct
     4801 gattaatatt ctcaacaatc cccaaatttg attacatgtc ctactagaat aagttcagcc
     4861 agttttatta tctaaaatgc ttattagata ccgtctcccc caaaagtgat aacggaatca
     4921 aagtgactat gatttattaa tctttaaaaa cgcctgtaat tccaagtttc tttgaccagc
     4981 ctccaaggtt cataactact ttcagagtat ttagaaaagt cacagaaaga actaatcttt
     5041 cagaatacac gcaagtgact atacagagct agaacacgtt tacgagaaat catataaatg
     5101 tgtctggatg gggcagcaga gatcccagca gaggctgaga ggctagacca gcccgaggtc
     5161 gttttcagtg tttctactgc agcgtgtgcc tcaatcagac atacaaggcc ctcaccccac
     5221 gtcctcaaga catctgaaaa ttaatctttc aagattttat cgacaaatga aactaattat
     5281 taagttttag acagttctta tttggatgtg atctcttagt taaaaagaat ttacactggg
     5341 atatcctcaa acatcagact tttcctttat gttcctgata caacgcctca gatttgcaca
     5401 actgcgagag ttggcttctt cctaaggaag tgaagaacaa acttcggtat cacaacgagt
     5461 tgctgcgaat aacaactgtg atccaggacg tgtcagtact cgcactttac gtatggctac
     5521 attccaaaga tttaccctaa taaatacttg gtgttatttg tgcagctctt
//
LOCUS       XM_032649833            3407 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus isoleucyl-tRNA synthetase 2,
            mitochondrial (IARS2), transcript variant X2, mRNA.
ACCESSION   XM_032649833
VERSION     XM_032649833.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3407
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3407
                     /gene="IARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 17 long SRA reads, 3
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116762623"
     CDS             112..3027
                     /gene="IARS2"
                     /codon_start=1
                     /product="isoleucine--tRNA ligase, mitochondrial isoform
                     X2"
                     /protein_id="XP_032505724.1"
                     /db_xref="GeneID:116762623"
                     /translation="MRCGLRPRGPGAAALAVARNLWVPPRLPRRPGWRGATRRLLVRS
                     VTGASNQLQNSSNGSYRDTVLLPQTSFPMKLLGRQQPDTELGVQQILKDIANRYHMMR
                     GSKIHFVPGWDCHGLPIEIKVLSELGGKAQNLSAMEIREKARSFAKAAIEKQKSAFIR
                     WGIMADWNNCYYTFDGRYEARQLRIFYEMYDKGLIYRSYKPVFWSPSSRTALAEAELE
                     YNPEHVSCSVYVKFPLLKPSPKLASLIDGSSPVSFLVWTTQPWTIPANQAVCYMPESK
                     YAVVKCSKSGDLYVLAADKVTSVASTLETTFEVISTFSGVDLEDGTCAHPFISERVSP
                     LLPASHVTMTKGTGLVHTAPAHGMEDYSVASQHSLSMDCLVNEDGVFTDAAGPELQNK
                     AVLEEGTDAVIKMLQAAKNLLKEEKLVHSYPYDWRTKKPVVIRASKQWFVNIMDIKTT
                     AKELLKKVKFIPGSALNAMVEMMDRRPYWCISRQRVWGVPIPVFHHKTKDEFLINSQT
                     IEHIIKLVEEHGSDIWWTLPPEQLLPKEVLSQVGGPDALEYVPGQDILDIWFDSGTSW
                     SYVLPGTDQRADLYLEGKDQLGGWFQSSLLTSVAARNKSPFKTVVVHGFTLGEKGEKM
                     SKSLGNVTDPDVVINGGQDQSKEPPYGADVLRWWVAESNVFTEVIISPFVLNAARDDI
                     NKLRNTLRFLLGNVAGFNPETDSVPVNNMYFIDQYMLHLLQDLANKITDSYKQYDFGK
                     VVRLLRAFYTRELSNFYFSIIKDRLYCENADDPKRRSCQTALAEILDVMVRSFAPILP
                     HLAEEVFQYVPYIKEPKSVFRTGWIRTSSIWKKPGLEEAIESACAMRDSFLGSIPGRN
                     AAEYEVIIVIEPGLLFEIIEMLQAEETSSTSQLNELMMASQTTLLSQEPRAVTADVTE
                     LRGTFLINLEGGDIREESSYKVIVMPTTKEKCPRCWKYTAESSDTLCPRCAEVVRGK"
     misc_feature    289..3021
                     /gene="IARS2"
                     /note="Isoleucyl-tRNA synthetase [Translation, ribosomal
                     structure and biogenesis]; Region: IleS; COG0060"
                     /db_xref="CDD:439830"
ORIGIN      
        1 gcgcactcct gctaaggctc gcgcaggtgc tctggtctcc ctcttcccca gagccgggcg
       61 ggaagctagg ccttggcgtc tctccggagc ctgggtttgg cctggcccgc catgcgttgc
      121 gggctgcgcc ctcgcgggcc gggagcagcg gccctggccg tggcccggaa tttgtgggtg
      181 ccgccccgcc ttcctcgtcg gcctggctgg cgaggggcga cgaggaggct tttggtgcgg
      241 tcagtcaccg gggccagtaa ccagctgcag aattcgagta atggcagcta tcgggacacg
      301 gtgttgctgc cgcagaccag cttccccatg aagctgctgg gccgccagca gcccgacacg
      361 gagctggggg tccaacagat tttgaaagat atagccaacc gataccatat gatgagaggt
      421 tccaaaatac attttgtgcc aggctgggat tgtcatggct tacccattga aataaaagta
      481 ttatcagaac ttggtggaaa agctcagaat ctttcagcta tggaaattag agagaaagct
      541 agatcatttg ccaaggcagc tattgagaaa caaaaatcgg catttattcg ttggggaata
      601 atggcagatt ggaataattg ctactataca tttgatggac gatatgaagc cagacagttg
      661 agaattttct atgaaatgta tgataagggc ttgatttatc gatcttataa acctgtgttt
      721 tggtctccct catcaaggac tgcattggct gaagcagaac ttgaatataa tccagagcat
      781 gtcagttgct cagtatatgt aaaatttcct ctcttgaaac cttctcctaa gttggcgtct
      841 cttatagatg gttcatctcc tgttagtttc ttagtctgga ccacccagcc ttggacaatt
      901 ccagccaatc aggctgtttg ttatatgcca gaatcaaagt atgctgtcgt gaagtgttcc
      961 aaatctggag acttatacgt tttagctgca gataaagtaa catctgttgc ttctactttg
     1021 gaaacaacat ttgaggttat ttcaacattt tctggtgttg acttggaaga tggtacttgt
     1081 gctcatcctt tcatttctga gagggtgtct cctcttttac ctgccagtca tgtgaccatg
     1141 acaaaaggaa cagggttggt tcacacagcc ccagctcatg gtatggaaga ttacagtgta
     1201 gcttctcaac acagcttgtc catggattgt ttagtgaatg aagatggagt ctttacagat
     1261 gctgcgggtc ctgaactgca aaacaaagct gttcttgaag agggaacaga tgcggttata
     1321 aagatgcttc aggctgcaaa gaatttgttg aaagaggaaa aattggtaca cagctatccc
     1381 tatgactgga ggactaagaa accagtagtt attcgtgcca gcaagcagtg gtttgtaaat
     1441 atcatggata ttaagactac agccaaggaa ttgttaaaaa aagtgaaatt tattcctgga
     1501 tcagcactga atgccatggt tgaaatgatg gacaggcggc catattggtg tatatcaagg
     1561 caaagagttt ggggtgttcc aattcctgtg tttcatcata agacaaaaga tgaattcttg
     1621 atcaacagcc agactattga gcatattatt aaactagtgg aagagcatgg cagtgatatc
     1681 tggtggactc ttcccccgga gcagcttctt ccaaaagaag tcttatctca ggttggtggt
     1741 cctgatgctt tggagtatgt gccaggtcag gatattttgg acatctggtt tgacagtgga
     1801 acttcatggt cttatgttct tccaggtact gaccaaagag cagatttgta cttggaagga
     1861 aaagaccagc ttgggggttg gtttcagtct tccttgttaa caagtgtggc agcaaggaat
     1921 aaatcacctt ttaagacagt ggttgttcat ggatttaccc ttggagaaaa gggagaaaag
     1981 atgtccaagt ctctcgggaa tgtcactgat cctgatgttg tcattaatgg aggacaagat
     2041 caaagcaaag agcctcccta tggtgctgat gtccttcgct ggtgggtcgc tgagtccaat
     2101 gtcttcactg aagtgataat tagtccattt gtactgaatg ctgccagaga tgatattaac
     2161 aagcttagga atactctccg ctttcttttg ggaaatgtgg ctggtttcaa cccagaaaca
     2221 gattctgtcc ctgttaacaa tatgtatttc atagaccagt atatgctaca cttactgcag
     2281 gatttagcaa acaagattac cgattcatat aagcagtatg actttggaaa agttgttcgg
     2341 ctattacgag cattttatac cagagaactc tccaactttt atttcagcat aatcaaagat
     2401 aggctttatt gtgaaaatgc ggatgatccc aaacgacgct cctgtcagac tgccttagcc
     2461 gaaattttgg atgtaatggt tcgttctttt gctcccattc ttcctcactt ggctgaagag
     2521 gtattccagt acgtacctta cattaaagaa cccaagagtg tttttcgtac tggatggatt
     2581 agaaccagtt ctatctggaa gaagcctgga ctggaagaag caatagagag tgcgtgtgcg
     2641 atgagagatt catttcttgg aagcatccct ggcagaaatg cagctgagta tgaggttatc
     2701 attgtgattg agcctggact gctttttgag ataatagaaa tgctacaggc tgaggagact
     2761 tccagcacct ctcagctgaa tgaattaatg atggcgtccc agacaacttt gctctctcag
     2821 gaaccacgag cagtgactgc agatgtcact gagcttagag ggacatttct aatcaaccta
     2881 gaaggtggtg atattcgtga agagtcttca tataaagtaa ttgtcatgcc aactaccaag
     2941 gaaaaatgcc ctcgctgttg gaagtacacc gctgagtcat cagacacact ctgtccgcga
     3001 tgcgcagaag tcgtgagagg gaagtaacac ctcgctgtgt gttgagggct ttctgagcaa
     3061 gaacttcctg acgggactgc ctgggggttt aggtggattg ttcacagcac tgcaaagaaa
     3121 tccaagattt aggtaatgag tggaagagta agtgatagag gatgagagtc agagttagag
     3181 ctacaagttt tttctgtaac taaataaaaa taacgtgtat atacacatgg aaaaatatac
     3241 ctatgcagat ggatccacaa tggacttcct cagaacatag acactgaaaa tgcttgccta
     3301 caaatgtggc tcagcagaaa atgttttata ttttatcagt cttcttgact cagtatttaa
     3361 gttctataat gtctaaaaat aaaggcccct gggaaattac tgactga
//
LOCUS       XM_032649841            3020 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus isoleucyl-tRNA synthetase 2,
            mitochondrial (IARS2), transcript variant X3, mRNA.
ACCESSION   XM_032649841
VERSION     XM_032649841.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3020
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3020
                     /gene="IARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762623"
     CDS             79..2865
                     /gene="IARS2"
                     /codon_start=1
                     /product="isoleucine--tRNA ligase, mitochondrial isoform
                     X3"
                     /protein_id="XP_032505732.1"
                     /db_xref="GeneID:116762623"
                     /translation="MRCGLRPRGPGAAALAVARNLWVPPRLPRRPGWRGATRRLLVRS
                     VTGASNQLQNSSNGSYRDTVLLPQTSFPMKLLGRQQPDTELGVQQKCGFLELYSWQRE
                     RKVKTEFCLHDGPPYANGDPHVGHALNKILKDIANRYHMMRGSKIHFVPGWDCHGLPI
                     EIKVLSELGGKAQNLSAMEIREKARSFAKAAIEKQKSAFIRWGIMADWNNCYYTFDGR
                     YEARQLRIFYEMYDKGLIYRSYKPVFWSPSSRTALAEAELEYNPEHVSCSVYVKFPLL
                     KPSPKLASLIDGSSPVSFLVWTTQPWTIPANQAVCYMPESKYAVVKCSKSGDLYVLAA
                     DKVTSVASTLETTFEVISTFSGVDLEDGTCAHPFISERVSPLLPASHVTMTKGTGLVH
                     TAPAHGMEDYSVASQHSLSMDCLVNEDGVFTDAAGPELQNKAVLEEGTDAVIKMLQAA
                     KNLLKEEKLVHSYPYDWRTKKPVVIRASKQWFVNIMDIKTTAKELLKKVKFIPGSALN
                     AMVEMMDRRPYWCISRQRVWGVPIPVFHHKTKDEFLINSQTIEHIIKLVEEHGSDIWW
                     TLPPEQLLPKEVLSQVGGPDALEYVPGQDILDIWFDSGTSWSYVLPGTDQRADLYLEG
                     KDQLGGWFQSSLLTSVAARNKSPFKTVVVHGFTLGEKGEKMSKSLGNVTDPDVVINGG
                     QDQSKEPPYGADVLRWWVAESNVFTEVIISPFVLNAARDDINKLRNTLRFLLGNVAGF
                     NPETDSVPVNNMYFIDQYMLHLLQDLANKITDSYKQYDFGKVVRLLRAFYTRELSNFY
                     FSIIKDRLYCENADDPKRRSCQTALAEILDVMVRSFAPILPHLAEEVFQYVPYIKEPK
                     SVFRTGWIRTSSIWKKPGLEEAIESACAMRDSFLGSIPGRNAAEYEVIIVIEPGLLFE
                     IIEEFCITYLTHSF"
     misc_feature    256..2844
                     /gene="IARS2"
                     /note="Isoleucyl-tRNA synthetase [Translation, ribosomal
                     structure and biogenesis]; Region: IleS; COG0060"
                     /db_xref="CDD:439830"
ORIGIN      
        1 ggtctccctc ttccccagag ccgggcggga agctaggcct tggcgtctct ccggagcctg
       61 ggtttggcct ggcccgccat gcgttgcggg ctgcgccctc gcgggccggg agcagcggcc
      121 ctggccgtgg cccggaattt gtgggtgccg ccccgccttc ctcgtcggcc tggctggcga
      181 ggggcgacga ggaggctttt ggtgcggtca gtcaccgggg ccagtaacca gctgcagaat
      241 tcgagtaatg gcagctatcg ggacacggtg ttgctgccgc agaccagctt ccccatgaag
      301 ctgctgggcc gccagcagcc cgacacggag ctgggggtcc aacagaaatg tggatttttg
      361 gaactttatt catggcaaag agaaagaaaa gtgaagacag agttttgtct tcacgatgga
      421 cctccttatg caaatggtga ccctcatgtt ggacatgctt taaataagat tttgaaagat
      481 atagccaacc gataccatat gatgagaggt tccaaaatac attttgtgcc aggctgggat
      541 tgtcatggct tacccattga aataaaagta ttatcagaac ttggtggaaa agctcagaat
      601 ctttcagcta tggaaattag agagaaagct agatcatttg ccaaggcagc tattgagaaa
      661 caaaaatcgg catttattcg ttggggaata atggcagatt ggaataattg ctactataca
      721 tttgatggac gatatgaagc cagacagttg agaattttct atgaaatgta tgataagggc
      781 ttgatttatc gatcttataa acctgtgttt tggtctccct catcaaggac tgcattggct
      841 gaagcagaac ttgaatataa tccagagcat gtcagttgct cagtatatgt aaaatttcct
      901 ctcttgaaac cttctcctaa gttggcgtct cttatagatg gttcatctcc tgttagtttc
      961 ttagtctgga ccacccagcc ttggacaatt ccagccaatc aggctgtttg ttatatgcca
     1021 gaatcaaagt atgctgtcgt gaagtgttcc aaatctggag acttatacgt tttagctgca
     1081 gataaagtaa catctgttgc ttctactttg gaaacaacat ttgaggttat ttcaacattt
     1141 tctggtgttg acttggaaga tggtacttgt gctcatcctt tcatttctga gagggtgtct
     1201 cctcttttac ctgccagtca tgtgaccatg acaaaaggaa cagggttggt tcacacagcc
     1261 ccagctcatg gtatggaaga ttacagtgta gcttctcaac acagcttgtc catggattgt
     1321 ttagtgaatg aagatggagt ctttacagat gctgcgggtc ctgaactgca aaacaaagct
     1381 gttcttgaag agggaacaga tgcggttata aagatgcttc aggctgcaaa gaatttgttg
     1441 aaagaggaaa aattggtaca cagctatccc tatgactgga ggactaagaa accagtagtt
     1501 attcgtgcca gcaagcagtg gtttgtaaat atcatggata ttaagactac agccaaggaa
     1561 ttgttaaaaa aagtgaaatt tattcctgga tcagcactga atgccatggt tgaaatgatg
     1621 gacaggcggc catattggtg tatatcaagg caaagagttt ggggtgttcc aattcctgtg
     1681 tttcatcata agacaaaaga tgaattcttg atcaacagcc agactattga gcatattatt
     1741 aaactagtgg aagagcatgg cagtgatatc tggtggactc ttcccccgga gcagcttctt
     1801 ccaaaagaag tcttatctca ggttggtggt cctgatgctt tggagtatgt gccaggtcag
     1861 gatattttgg acatctggtt tgacagtgga acttcatggt cttatgttct tccaggtact
     1921 gaccaaagag cagatttgta cttggaagga aaagaccagc ttgggggttg gtttcagtct
     1981 tccttgttaa caagtgtggc agcaaggaat aaatcacctt ttaagacagt ggttgttcat
     2041 ggatttaccc ttggagaaaa gggagaaaag atgtccaagt ctctcgggaa tgtcactgat
     2101 cctgatgttg tcattaatgg aggacaagat caaagcaaag agcctcccta tggtgctgat
     2161 gtccttcgct ggtgggtcgc tgagtccaat gtcttcactg aagtgataat tagtccattt
     2221 gtactgaatg ctgccagaga tgatattaac aagcttagga atactctccg ctttcttttg
     2281 ggaaatgtgg ctggtttcaa cccagaaaca gattctgtcc ctgttaacaa tatgtatttc
     2341 atagaccagt atatgctaca cttactgcag gatttagcaa acaagattac cgattcatat
     2401 aagcagtatg actttggaaa agttgttcgg ctattacgag cattttatac cagagaactc
     2461 tccaactttt atttcagcat aatcaaagat aggctttatt gtgaaaatgc ggatgatccc
     2521 aaacgacgct cctgtcagac tgccttagcc gaaattttgg atgtaatggt tcgttctttt
     2581 gctcccattc ttcctcactt ggctgaagag gtattccagt acgtacctta cattaaagaa
     2641 cccaagagtg tttttcgtac tggatggatt agaaccagtt ctatctggaa gaagcctgga
     2701 ctggaagaag caatagagag tgcgtgtgcg atgagagatt catttcttgg aagcatccct
     2761 ggcagaaatg cagctgagta tgaggttatc attgtgattg agcctggact gctttttgag
     2821 ataatagaag aattttgtat tacttacctc acacactcgt tttgaagatg gaaactacaa
     2881 caaaaaatat gctacaggct gaggagactt ccagcacctc tcagctgaat gaattaatga
     2941 tggcgtccca gacaactttg ctctctcagg aaccacgagc agtgactgca gatgtcactg
     3001 agcttagagg gacatttcta
//
LOCUS       XM_032649850            3369 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus isoleucyl-tRNA synthetase 2,
            mitochondrial (IARS2), transcript variant X4, mRNA.
ACCESSION   XM_032649850
VERSION     XM_032649850.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3369
                     /gene="IARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 17 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762623"
     CDS             371..2989
                     /gene="IARS2"
                     /codon_start=1
                     /product="isoleucine--tRNA ligase, mitochondrial isoform
                     X4"
                     /protein_id="XP_032505741.1"
                     /db_xref="GeneID:116762623"
                     /translation="MMRGSKIHFVPGWDCHGLPIEIKVLSELGGKAQNLSAMEIREKA
                     RSFAKAAIEKQKSAFIRWGIMADWNNCYYTFDGRYEARQLRIFYEMYDKGLIYRSYKP
                     VFWSPSSRTALAEAELEYNPEHVSCSVYVKFPLLKPSPKLASLIDGSSPVSFLVWTTQ
                     PWTIPANQAVCYMPESKYAVVKCSKSGDLYVLAADKVTSVASTLETTFEVISTFSGVD
                     LEDGTCAHPFISERVSPLLPASHVTMTKGTGLVHTAPAHGMEDYSVASQHSLSMDCLV
                     NEDGVFTDAAGPELQNKAVLEEGTDAVIKMLQAAKNLLKEEKLVHSYPYDWRTKKPVV
                     IRASKQWFVNIMDIKTTAKELLKKVKFIPGSALNAMVEMMDRRPYWCISRQRVWGVPI
                     PVFHHKTKDEFLINSQTIEHIIKLVEEHGSDIWWTLPPEQLLPKEVLSQVGGPDALEY
                     VPGQDILDIWFDSGTSWSYVLPGTDQRADLYLEGKDQLGGWFQSSLLTSVAARNKSPF
                     KTVVVHGFTLGEKGEKMSKSLGNVTDPDVVINGGQDQSKEPPYGADVLRWWVAESNVF
                     TEVIISPFVLNAARDDINKLRNTLRFLLGNVAGFNPETDSVPVNNMYFIDQYMLHLLQ
                     DLANKITDSYKQYDFGKVVRLLRAFYTRELSNFYFSIIKDRLYCENADDPKRRSCQTA
                     LAEILDVMVRSFAPILPHLAEEVFQYVPYIKEPKSVFRTGWIRTSSIWKKPGLEEAIE
                     SACAMRDSFLGSIPGRNAAEYEVIIVIEPGLLFEIIEMLQAEETSSTSQLNELMMASQ
                     TTLLSQEPRAVTADVTELRGTFLINLEGGDIREESSYKVIVMPTTKEKCPRCWKYTAE
                     SSDTLCPRCAEVVRGK"
     misc_feature    374..2983
                     /gene="IARS2"
                     /note="Isoleucyl-tRNA synthetase [Translation, ribosomal
                     structure and biogenesis]; Region: IleS; COG0060"
                     /db_xref="CDD:439830"
ORIGIN      
        1 tcagtcaccg gggccagtaa ccagctgcag aattcgagta atggcagcta tcgggacacg
       61 gtgttgctgc cgcagaccag cttccccatg aagctgctgg gccgccagca gcccgacacg
      121 gagctggggg tccaacagtg ttttatccag taccttctgt atttctggaa ctgtgacagt
      181 tgcagagatt ttctcatata atcttcacac cagctcgaaa tgtggatttt tggaacttta
      241 ttcatggcaa agagaaagaa aagtgaagac agagttttgt cttcacgatg gacctcctta
      301 tgcaaatggt gaccctcatg ttggacatgc tttaaataag attttgaaag atatagccaa
      361 ccgataccat atgatgagag gttccaaaat acattttgtg ccaggctggg attgtcatgg
      421 cttacccatt gaaataaaag tattatcaga acttggtgga aaagctcaga atctttcagc
      481 tatggaaatt agagagaaag ctagatcatt tgccaaggca gctattgaga aacaaaaatc
      541 ggcatttatt cgttggggaa taatggcaga ttggaataat tgctactata catttgatgg
      601 acgatatgaa gccagacagt tgagaatttt ctatgaaatg tatgataagg gcttgattta
      661 tcgatcttat aaacctgtgt tttggtctcc ctcatcaagg actgcattgg ctgaagcaga
      721 acttgaatat aatccagagc atgtcagttg ctcagtatat gtaaaatttc ctctcttgaa
      781 accttctcct aagttggcgt ctcttataga tggttcatct cctgttagtt tcttagtctg
      841 gaccacccag ccttggacaa ttccagccaa tcaggctgtt tgttatatgc cagaatcaaa
      901 gtatgctgtc gtgaagtgtt ccaaatctgg agacttatac gttttagctg cagataaagt
      961 aacatctgtt gcttctactt tggaaacaac atttgaggtt atttcaacat tttctggtgt
     1021 tgacttggaa gatggtactt gtgctcatcc tttcatttct gagagggtgt ctcctctttt
     1081 acctgccagt catgtgacca tgacaaaagg aacagggttg gttcacacag ccccagctca
     1141 tggtatggaa gattacagtg tagcttctca acacagcttg tccatggatt gtttagtgaa
     1201 tgaagatgga gtctttacag atgctgcggg tcctgaactg caaaacaaag ctgttcttga
     1261 agagggaaca gatgcggtta taaagatgct tcaggctgca aagaatttgt tgaaagagga
     1321 aaaattggta cacagctatc cctatgactg gaggactaag aaaccagtag ttattcgtgc
     1381 cagcaagcag tggtttgtaa atatcatgga tattaagact acagccaagg aattgttaaa
     1441 aaaagtgaaa tttattcctg gatcagcact gaatgccatg gttgaaatga tggacaggcg
     1501 gccatattgg tgtatatcaa ggcaaagagt ttggggtgtt ccaattcctg tgtttcatca
     1561 taagacaaaa gatgaattct tgatcaacag ccagactatt gagcatatta ttaaactagt
     1621 ggaagagcat ggcagtgata tctggtggac tcttcccccg gagcagcttc ttccaaaaga
     1681 agtcttatct caggttggtg gtcctgatgc tttggagtat gtgccaggtc aggatatttt
     1741 ggacatctgg tttgacagtg gaacttcatg gtcttatgtt cttccaggta ctgaccaaag
     1801 agcagatttg tacttggaag gaaaagacca gcttgggggt tggtttcagt cttccttgtt
     1861 aacaagtgtg gcagcaagga ataaatcacc ttttaagaca gtggttgttc atggatttac
     1921 ccttggagaa aagggagaaa agatgtccaa gtctctcggg aatgtcactg atcctgatgt
     1981 tgtcattaat ggaggacaag atcaaagcaa agagcctccc tatggtgctg atgtccttcg
     2041 ctggtgggtc gctgagtcca atgtcttcac tgaagtgata attagtccat ttgtactgaa
     2101 tgctgccaga gatgatatta acaagcttag gaatactctc cgctttcttt tgggaaatgt
     2161 ggctggtttc aacccagaaa cagattctgt ccctgttaac aatatgtatt tcatagacca
     2221 gtatatgcta cacttactgc aggatttagc aaacaagatt accgattcat ataagcagta
     2281 tgactttgga aaagttgttc ggctattacg agcattttat accagagaac tctccaactt
     2341 ttatttcagc ataatcaaag ataggcttta ttgtgaaaat gcggatgatc ccaaacgacg
     2401 ctcctgtcag actgccttag ccgaaatttt ggatgtaatg gttcgttctt ttgctcccat
     2461 tcttcctcac ttggctgaag aggtattcca gtacgtacct tacattaaag aacccaagag
     2521 tgtttttcgt actggatgga ttagaaccag ttctatctgg aagaagcctg gactggaaga
     2581 agcaatagag agtgcgtgtg cgatgagaga ttcatttctt ggaagcatcc ctggcagaaa
     2641 tgcagctgag tatgaggtta tcattgtgat tgagcctgga ctgctttttg agataataga
     2701 aatgctacag gctgaggaga cttccagcac ctctcagctg aatgaattaa tgatggcgtc
     2761 ccagacaact ttgctctctc aggaaccacg agcagtgact gcagatgtca ctgagcttag
     2821 agggacattt ctaatcaacc tagaaggtgg tgatattcgt gaagagtctt catataaagt
     2881 aattgtcatg ccaactacca aggaaaaatg ccctcgctgt tggaagtaca ccgctgagtc
     2941 atcagacaca ctctgtccgc gatgcgcaga agtcgtgaga gggaagtaac acctcgctgt
     3001 gtgttgaggg ctttctgagc aagaacttcc tgacgggact gcctgggggt ttaggtggat
     3061 tgttcacagc actgcaaaga aatccaagat ttaggtaatg agtggaagag taagtgatag
     3121 aggatgagag tcagagttag agctacaagt tttttctgta actaaataaa aataacgtgt
     3181 atatacacat ggaaaaatat acctatgcag atggatccac aatggacttc ctcagaacat
     3241 agacactgaa aatgcttgcc tacaaatgtg gctcagcaga aaatgtttta tattttatca
     3301 gtcttcttga ctcagtattt aagttctata atgtctaaaa ataaaggccc ctgggaaatt
     3361 actgactga
//
LOCUS       XM_032649865            4735 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ETS translocation variant 3
            (LOC116762635), transcript variant X1, mRNA.
ACCESSION   XM_032649865
VERSION     XM_032649865.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4735
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4735
                     /gene="LOC116762635"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762635"
     CDS             279..1814
                     /gene="LOC116762635"
                     /codon_start=1
                     /product="ETS translocation variant 3 isoform X1"
                     /protein_id="XP_032505756.1"
                     /db_xref="GeneID:116762635"
                     /translation="MKAGCSIVEKPEGGGGYQFPDWAYKTESSPGSRQIQLWHFILEL
                     LQKEEFRHVIAWQQGEYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKRI
                     LHKTKGKRFTYKFNFNKLVMPNYPFINIRSSGVVPQSAPPVPTASSRFHFPPLDTHSP
                     TSDVQPGRFSASSLTASGQESSTGTDRKVELSELEDGSAADWRRGVDLMSSRNAVGGG
                     IGHQKRKPDIMLPLFSRPGMYPDPHSPFAISPIPGRGGVLNVPISPALSLTPTIFSYS
                     PSPGLSPFTSSSCFSFNPEEMKHYLHSQACSVFNYHLSPRTFPRYPGLMVPPLQCQMH
                     PEESAQFSIKLQPPPVGRKNRERVESSEEAAPVTVSTLAPVPPRIKVEPASEKDPESL
                     RQSAREKEERAQEEGSVPSRTTEEEKGTIFARPAAPPVWPSVPVSTPSEEPLEVTEDS
                     EDRPGKEPGAPEKKEDALMPPKLRLKRRWNDDPEARELSKNGKFLWNGSGPRGLATAA
                     ADA"
     misc_feature    378..638
                     /gene="LOC116762635"
                     /note="erythroblast transformation specific domain;
                     Region: ETS; smart00413"
                     /db_xref="CDD:197710"
     misc_feature    <969..1688
                     /gene="LOC116762635"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 cgggaggagc gcgcgccgag ggctgggtgc gggcggaagc cggcgtctgc ggaaaggaga
       61 aaggaaaggg aggcacggct gggtgaggcg cggcgcggcg ctgctgcgag accggcagga
      121 gggcgccgcc ccctcccccg ccctctccgc tgaggatgga agtgacgaaa gcagccgagg
      181 aggtcacttc ctgctggggt ggatgaggag gagccggagt cgccgcggag gagaccggac
      241 cgaagacgga ccgtgcgggg gagagcagga gggtgaaaat gaaagcaggc tgtagcatcg
      301 tggaaaagcc agaaggaggt ggagggtatc agtttcctga ttgggcctat aaaacagagt
      361 cgtccccggg ttcccggcag atccagctat ggcacttcat cctggagctg ctgcagaagg
      421 aggagttccg ccatgtcatc gcctggcagc agggagagta cggggagttt gtcatcaagg
      481 atccagacga ggtggcccgc ctctggggcc gcaggaagtg caaaccacag atgaattatg
      541 acaagctgag ccgggccctg agatactatt acaacaagag gatccttcat aaaacaaaag
      601 ggaaaaggtt tacttataaa tttaacttca acaagctggt gatgcccaac tacccgttca
      661 tcaacatacg gtcaagtggt gtggttcccc agagtgcgcc accagtgcca acagcctctt
      721 cccgcttcca cttcccacct ctggacaccc attctccaac tagtgatgtg cagccagggc
      781 ggttctctgc tagctcccta actgcttctg gccaggagtc aagcactggc actgatagaa
      841 aggtggagct ttcggagctg gaggatggct cagccgctga ctggcgccgg ggtgtggatc
      901 tcatgtcctc ccgaaatgct gtcggcggag ggattggcca tcagaagcgc aaacctgaca
      961 tcatgcttcc cctgttctct aggccaggga tgtaccctga cccccatagt cccttcgcca
     1021 tctctcccat ccccggccgt ggaggcgtcc tgaatgtccc catttcacca gccctctccc
     1081 tgactcccac catcttctcc tatagcccgt cgccaggcct gagccccttc accagcagca
     1141 gttgcttctc cttcaaccct gaggaaatga aacactacct tcattctcaa gcctgttctg
     1201 tgttcaacta ccatctgagt ccgcggacat ttcctcgtta cccagggctc atggttccac
     1261 cgctgcagtg ccagatgcat cctgaggagt cagcccagtt ttccatcaag ctgcagcccc
     1321 cacctgtcgg gcggaagaac cgggagaggg tggagagcag cgaggaggca gcgcctgtca
     1381 ctgtttccac gctggctcct gtccccccga gaattaaggt ggaaccagcc tctgagaagg
     1441 atcctgagag tctcaggcag tcggcacgag aaaaggagga gcgcgctcaa gaagagggca
     1501 gtgtgccaag caggaccaca gaagaggaaa aaggcaccat ctttgcccgc ccggctgcac
     1561 cgcctgtctg gccctctgta cccgttagca ccccaagtga agaaccccta gaggtgactg
     1621 aagacagtga ggacaggcct ggcaaagagc ccggtgcacc tgagaagaaa gaagatgccc
     1681 tgatgccccc caagcttcgg ttgaagcggc ggtggaacga tgaccctgaa gcccgggagc
     1741 tgagtaagaa tggcaagttc ctctggaatg ggtcaggacc ccggggcttg gcaacggctg
     1801 ctgctgacgc ttagaactgg aagttgattg ggagctgttt atactataat caaacataca
     1861 tgtatttatg tagcaggatt tcagggtggg gggtggggag ggaattaggc tggtttgatc
     1921 cttctagggg catagacttg tatttttatg tttgggggat aggatggggg tatcttctgt
     1981 tgtaaattag atgggatgtg aacacacttt ttttcctggt gagtaggaca tgggaagggt
     2041 attgaactga aagaagaaag agcctctgtt tcctgttgag gcttacactt tctgacaaac
     2101 tcccagaggg ccaagatact gttgggtccc atgatagttc aggttccaga cttgtttctt
     2161 ttctattgta tttttatatg gaaagccatt aatgaattta ttttgctctg agacatacac
     2221 ataaaaggga aaggggcgtg gttgggaggt tgagcagtga ggttgagcag tgagagacca
     2281 ttaatactaa gtattttgcc tgaaatgttt ctttataatt atttcagggg aggaataaga
     2341 atctcagtct tacgggggca ggaggatgtt caggtgttgc tctttttctt tttccctttg
     2401 ttgttgtttg gcttcttttt tttttttcct ttttataaaa tgttttcagg aaacgtgaaa
     2461 tgtactgcca gttagagcgg ggctggcaag gcacaggcgc tgagccttca gctactttgt
     2521 tgagacagga agccctgctg tgaatttctt ggacatttca cctacttcac cttttaagaa
     2581 gccatgagga gttataaact cttgttcagg gaagaaagag gagggcagga ggatgtaacc
     2641 caatgccttt aaaaacaaaa acacaacaat gctctttttt ttttttcttc atggtgggtt
     2701 tggggagcca aaccaacgtg tgactgagcg agttgactga gagacgtgac agagttgaag
     2761 atgtctttct gcagtgtctg gttctcttat cgtcttctta agtcaaagcc ttaacaatga
     2821 acatacttca acatgatacg ggtctgtcaa cgtaaacctg taaaagggca tagacgtctt
     2881 ttcagataat ccaggagtgt tggaagatgg ttaaatttta agctggtatt taatcatccc
     2941 cccttgatgt attgggatag gtagcaaaaa ggcaggattg tgggagttaa gggcaggtga
     3001 tacctggaaa cacagaaggt agctgggggt acaagtggat gtttaggaag ctgaaagaag
     3061 cggtagacag gagacacaga agggagacag atgccaagag gcctggtgta agtgaagcag
     3121 tggttgtctg tcctgttgtg gtgttgccgt tcttgccata cccattcccc tagattgtac
     3181 taattctcat gatcaattga ctgtcctgcc tgagacccca ggaattgttt cttcatggga
     3241 aattcccttc cagcaacttc aaaggaatgg gaaagtattg atcttacatg aatcaaaagg
     3301 agcctggatt aggggcagag agaaagaagc cacggccaac tgtgtgtgtg tgtgtgtgtg
     3361 tgtgtgtgtg tgtgtgcgcg cgtgtgcgca catgtaagta cacagtagta tacagaaata
     3421 ccgaacatgg ctcagatcca cgagcagcag agagaagaaa taactgcgtc tctgataggg
     3481 gcaaggagtg ggcacgggga tgttgtctag aagttggaga gatagattcc tggctccatc
     3541 tcagcctagg tgaactcagt gtactaagag gcacttgagg gttgtcttct catggtgggg
     3601 gggggggggg tctattttaa actggagtgc gtgcgtgaga gaggggccca ggagaggttc
     3661 gagccggtgg gtgagttgtt aggtggctta agaggacttg agttcatcat gctctttttc
     3721 ggcaattgtc cgcccccttg tttgattcaa attccgtgag tgacttgtct ttccctggga
     3781 aaaggattag gagaatggtc cctgacaact caggcttcgg tcaggctgcc tttggttggt
     3841 tgtgtttttg tcggtttctt tctctgtacc tcgacttacc tcgaatcaga aagcaagccc
     3901 aggcaggtgg aagaggcatc tctgcttggc attgcccaat ctaaccaggg aggctggctg
     3961 cccaccgtct ctgtccacta gaggggaggg ccggcaggtg tcagtatgaa ctcaggaata
     4021 gaaacatgag gcctttaaaa taagagggag aaaaatccgt gatgcaaacc tgtaaccccc
     4081 tagaacccaa gtgccagaat taattcctag atgctgcttc tgtttgaata aaaagtcaca
     4141 gcttttacac ttgaaaaaaa cacactcaaa aaatgttcaa ctccatgaaa actgtttttg
     4201 gctttaagaa attgtttggt gtttaactgt ttcctttgat tgccattcca ccagtaaatt
     4261 gttggttgat ttgcactgca cagtggggtt ggggggaggg tcctacacag agccagactt
     4321 gggcttgccc gggaagtgga ccaggggatg tggaggtcac tgatatttcc tggagcaaag
     4381 gggtgggaga tagtttttct tcccggagcc cactctgggc agcacctgtc accagcctgg
     4441 cacaaagcca ggcctttctc ttccgcgagc atctcatcac tgaacagcag gtggaaaggg
     4501 ggggacaaca ccagacgtat tttgcctccc cattttttcc accttttgct gtgccaaatg
     4561 tttaacgttt tgcagataca gatcttgaac atgtattaag aacctgttca aactgtttgc
     4621 ttttttgact ctagagaaga aaacagtaga gatctcttca gggcatccag ccttgctgag
     4681 cttttctttt tttttttttt tttttaagaa cggctaggag tgaaatataa acaat
//
LOCUS       XM_032649869            4733 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ETS translocation variant 3
            (LOC116762635), transcript variant X2, mRNA.
ACCESSION   XM_032649869
VERSION     XM_032649869.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4733
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4733
                     /gene="LOC116762635"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762635"
     CDS             277..1812
                     /gene="LOC116762635"
                     /codon_start=1
                     /product="ETS translocation variant 3 isoform X1"
                     /protein_id="XP_032505760.1"
                     /db_xref="GeneID:116762635"
                     /translation="MKAGCSIVEKPEGGGGYQFPDWAYKTESSPGSRQIQLWHFILEL
                     LQKEEFRHVIAWQQGEYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKRI
                     LHKTKGKRFTYKFNFNKLVMPNYPFINIRSSGVVPQSAPPVPTASSRFHFPPLDTHSP
                     TSDVQPGRFSASSLTASGQESSTGTDRKVELSELEDGSAADWRRGVDLMSSRNAVGGG
                     IGHQKRKPDIMLPLFSRPGMYPDPHSPFAISPIPGRGGVLNVPISPALSLTPTIFSYS
                     PSPGLSPFTSSSCFSFNPEEMKHYLHSQACSVFNYHLSPRTFPRYPGLMVPPLQCQMH
                     PEESAQFSIKLQPPPVGRKNRERVESSEEAAPVTVSTLAPVPPRIKVEPASEKDPESL
                     RQSAREKEERAQEEGSVPSRTTEEEKGTIFARPAAPPVWPSVPVSTPSEEPLEVTEDS
                     EDRPGKEPGAPEKKEDALMPPKLRLKRRWNDDPEARELSKNGKFLWNGSGPRGLATAA
                     ADA"
     misc_feature    376..636
                     /gene="LOC116762635"
                     /note="erythroblast transformation specific domain;
                     Region: ETS; smart00413"
                     /db_xref="CDD:197710"
     misc_feature    <967..1686
                     /gene="LOC116762635"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 gcgggaggag cgcgcgccga gggctgggtg cgggcggaag ccggcgtctg cggaaaggag
       61 aaaggaaagg gaggcacggc tgggtgaggc gcggcgcggc gctgctgcga gaccggcagg
      121 agggcgccgc cccctccccc gccctctccg ctgaggatgg aagtgacgaa agcagccgag
      181 gaggtcactt cctgctgggg tggatgagga ggagccggag tcgccgcgga ggagaccgga
      241 ccgaagacgg accgtgcggg ggagaggagg gtgaaaatga aagcaggctg tagcatcgtg
      301 gaaaagccag aaggaggtgg agggtatcag tttcctgatt gggcctataa aacagagtcg
      361 tccccgggtt cccggcagat ccagctatgg cacttcatcc tggagctgct gcagaaggag
      421 gagttccgcc atgtcatcgc ctggcagcag ggagagtacg gggagtttgt catcaaggat
      481 ccagacgagg tggcccgcct ctggggccgc aggaagtgca aaccacagat gaattatgac
      541 aagctgagcc gggccctgag atactattac aacaagagga tccttcataa aacaaaaggg
      601 aaaaggttta cttataaatt taacttcaac aagctggtga tgcccaacta cccgttcatc
      661 aacatacggt caagtggtgt ggttccccag agtgcgccac cagtgccaac agcctcttcc
      721 cgcttccact tcccacctct ggacacccat tctccaacta gtgatgtgca gccagggcgg
      781 ttctctgcta gctccctaac tgcttctggc caggagtcaa gcactggcac tgatagaaag
      841 gtggagcttt cggagctgga ggatggctca gccgctgact ggcgccgggg tgtggatctc
      901 atgtcctccc gaaatgctgt cggcggaggg attggccatc agaagcgcaa acctgacatc
      961 atgcttcccc tgttctctag gccagggatg taccctgacc cccatagtcc cttcgccatc
     1021 tctcccatcc ccggccgtgg aggcgtcctg aatgtcccca tttcaccagc cctctccctg
     1081 actcccacca tcttctccta tagcccgtcg ccaggcctga gccccttcac cagcagcagt
     1141 tgcttctcct tcaaccctga ggaaatgaaa cactaccttc attctcaagc ctgttctgtg
     1201 ttcaactacc atctgagtcc gcggacattt cctcgttacc cagggctcat ggttccaccg
     1261 ctgcagtgcc agatgcatcc tgaggagtca gcccagtttt ccatcaagct gcagccccca
     1321 cctgtcgggc ggaagaaccg ggagagggtg gagagcagcg aggaggcagc gcctgtcact
     1381 gtttccacgc tggctcctgt ccccccgaga attaaggtgg aaccagcctc tgagaaggat
     1441 cctgagagtc tcaggcagtc ggcacgagaa aaggaggagc gcgctcaaga agagggcagt
     1501 gtgccaagca ggaccacaga agaggaaaaa ggcaccatct ttgcccgccc ggctgcaccg
     1561 cctgtctggc cctctgtacc cgttagcacc ccaagtgaag aacccctaga ggtgactgaa
     1621 gacagtgagg acaggcctgg caaagagccc ggtgcacctg agaagaaaga agatgccctg
     1681 atgcccccca agcttcggtt gaagcggcgg tggaacgatg accctgaagc ccgggagctg
     1741 agtaagaatg gcaagttcct ctggaatggg tcaggacccc ggggcttggc aacggctgct
     1801 gctgacgctt agaactggaa gttgattggg agctgtttat actataatca aacatacatg
     1861 tatttatgta gcaggatttc agggtggggg gtggggaggg aattaggctg gtttgatcct
     1921 tctaggggca tagacttgta tttttatgtt tgggggatag gatgggggta tcttctgttg
     1981 taaattagat gggatgtgaa cacacttttt ttcctggtga gtaggacatg ggaagggtat
     2041 tgaactgaaa gaagaaagag cctctgtttc ctgttgaggc ttacactttc tgacaaactc
     2101 ccagagggcc aagatactgt tgggtcccat gatagttcag gttccagact tgtttctttt
     2161 ctattgtatt tttatatgga aagccattaa tgaatttatt ttgctctgag acatacacat
     2221 aaaagggaaa ggggcgtggt tgggaggttg agcagtgagg ttgagcagtg agagaccatt
     2281 aatactaagt attttgcctg aaatgtttct ttataattat ttcaggggag gaataagaat
     2341 ctcagtctta cgggggcagg aggatgttca ggtgttgctc tttttctttt tccctttgtt
     2401 gttgtttggc ttcttttttt tttttccttt ttataaaatg ttttcaggaa acgtgaaatg
     2461 tactgccagt tagagcgggg ctggcaaggc acaggcgctg agccttcagc tactttgttg
     2521 agacaggaag ccctgctgtg aatttcttgg acatttcacc tacttcacct tttaagaagc
     2581 catgaggagt tataaactct tgttcaggga agaaagagga gggcaggagg atgtaaccca
     2641 atgcctttaa aaacaaaaac acaacaatgc tctttttttt ttttcttcat ggtgggtttg
     2701 gggagccaaa ccaacgtgtg actgagcgag ttgactgaga gacgtgacag agttgaagat
     2761 gtctttctgc agtgtctggt tctcttatcg tcttcttaag tcaaagcctt aacaatgaac
     2821 atacttcaac atgatacggg tctgtcaacg taaacctgta aaagggcata gacgtctttt
     2881 cagataatcc aggagtgttg gaagatggtt aaattttaag ctggtattta atcatccccc
     2941 cttgatgtat tgggataggt agcaaaaagg caggattgtg ggagttaagg gcaggtgata
     3001 cctggaaaca cagaaggtag ctgggggtac aagtggatgt ttaggaagct gaaagaagcg
     3061 gtagacagga gacacagaag ggagacagat gccaagaggc ctggtgtaag tgaagcagtg
     3121 gttgtctgtc ctgttgtggt gttgccgttc ttgccatacc cattccccta gattgtacta
     3181 attctcatga tcaattgact gtcctgcctg agaccccagg aattgtttct tcatgggaaa
     3241 ttcccttcca gcaacttcaa aggaatggga aagtattgat cttacatgaa tcaaaaggag
     3301 cctggattag gggcagagag aaagaagcca cggccaactg tgtgtgtgtg tgtgtgtgtg
     3361 tgtgtgtgtg tgtgcgcgcg tgtgcgcaca tgtaagtaca cagtagtata cagaaatacc
     3421 gaacatggct cagatccacg agcagcagag agaagaaata actgcgtctc tgataggggc
     3481 aaggagtggg cacggggatg ttgtctagaa gttggagaga tagattcctg gctccatctc
     3541 agcctaggtg aactcagtgt actaagaggc acttgagggt tgtcttctca tggtgggggg
     3601 ggggggggtc tattttaaac tggagtgcgt gcgtgagaga ggggcccagg agaggttcga
     3661 gccggtgggt gagttgttag gtggcttaag aggacttgag ttcatcatgc tctttttcgg
     3721 caattgtccg cccccttgtt tgattcaaat tccgtgagtg acttgtcttt ccctgggaaa
     3781 aggattagga gaatggtccc tgacaactca ggcttcggtc aggctgcctt tggttggttg
     3841 tgtttttgtc ggtttctttc tctgtacctc gacttacctc gaatcagaaa gcaagcccag
     3901 gcaggtggaa gaggcatctc tgcttggcat tgcccaatct aaccagggag gctggctgcc
     3961 caccgtctct gtccactaga ggggagggcc ggcaggtgtc agtatgaact caggaataga
     4021 aacatgaggc ctttaaaata agagggagaa aaatccgtga tgcaaacctg taacccccta
     4081 gaacccaagt gccagaatta attcctagat gctgcttctg tttgaataaa aagtcacagc
     4141 ttttacactt gaaaaaaaca cactcaaaaa atgttcaact ccatgaaaac tgtttttggc
     4201 tttaagaaat tgtttggtgt ttaactgttt cctttgattg ccattccacc agtaaattgt
     4261 tggttgattt gcactgcaca gtggggttgg ggggagggtc ctacacagag ccagacttgg
     4321 gcttgcccgg gaagtggacc aggggatgtg gaggtcactg atatttcctg gagcaaaggg
     4381 gtgggagata gtttttcttc ccggagccca ctctgggcag cacctgtcac cagcctggca
     4441 caaagccagg cctttctctt ccgcgagcat ctcatcactg aacagcaggt ggaaaggggg
     4501 ggacaacacc agacgtattt tgcctcccca ttttttccac cttttgctgt gccaaatgtt
     4561 taacgttttg cagatacaga tcttgaacat gtattaagaa cctgttcaaa ctgtttgctt
     4621 ttttgactct agagaagaaa acagtagaga tctcttcagg gcatccagcc ttgctgagct
     4681 tttctttttt tttttttttt tttaagaacg gctaggagtg aaatataaac aat
//
LOCUS       XM_032649876            4414 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ETS translocation variant 3
            (LOC116762635), transcript variant X3, mRNA.
ACCESSION   XM_032649876
VERSION     XM_032649876.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4414
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4414
                     /gene="LOC116762635"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762635"
     CDS             210..1493
                     /gene="LOC116762635"
                     /codon_start=1
                     /product="ETS translocation variant 3 isoform X2"
                     /protein_id="XP_032505767.1"
                     /db_xref="GeneID:116762635"
                     /translation="MNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVMPNYPFI
                     NIRSSGVVPQSAPPVPTASSRFHFPPLDTHSPTSDVQPGRFSASSLTASGQESSTGTD
                     RKVELSELEDGSAADWRRGVDLMSSRNAVGGGIGHQKRKPDIMLPLFSRPGMYPDPHS
                     PFAISPIPGRGGVLNVPISPALSLTPTIFSYSPSPGLSPFTSSSCFSFNPEEMKHYLH
                     SQACSVFNYHLSPRTFPRYPGLMVPPLQCQMHPEESAQFSIKLQPPPVGRKNRERVES
                     SEEAAPVTVSTLAPVPPRIKVEPASEKDPESLRQSAREKEERAQEEGSVPSRTTEEEK
                     GTIFARPAAPPVWPSVPVSTPSEEPLEVTEDSEDRPGKEPGAPEKKEDALMPPKLRLK
                     RRWNDDPEARELSKNGKFLWNGSGPRGLATAAADA"
     misc_feature    <210..317
                     /gene="LOC116762635"
                     /note="Ets-domain; Region: Ets; cl02599"
                     /db_xref="CDD:470627"
     misc_feature    <648..1367
                     /gene="LOC116762635"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 caggagggtg aaaatgaaag caggctgtag catcgtggaa aagccagaag gaggtggaga
       61 tccagctatg gcacttcatc ctggagctgc tgcagaagga ggagttccgc catgtcatcg
      121 cctggcagca gggagagtac ggggagtttg tcatcaagga tccagacgag gtggcccgcc
      181 tctggggccg caggaagtgc aaaccacaga tgaattatga caagctgagc cgggccctga
      241 gatactatta caacaagagg atccttcata aaacaaaagg gaaaaggttt acttataaat
      301 ttaacttcaa caagctggtg atgcccaact acccgttcat caacatacgg tcaagtggtg
      361 tggttcccca gagtgcgcca ccagtgccaa cagcctcttc ccgcttccac ttcccacctc
      421 tggacaccca ttctccaact agtgatgtgc agccagggcg gttctctgct agctccctaa
      481 ctgcttctgg ccaggagtca agcactggca ctgatagaaa ggtggagctt tcggagctgg
      541 aggatggctc agccgctgac tggcgccggg gtgtggatct catgtcctcc cgaaatgctg
      601 tcggcggagg gattggccat cagaagcgca aacctgacat catgcttccc ctgttctcta
      661 ggccagggat gtaccctgac ccccatagtc ccttcgccat ctctcccatc cccggccgtg
      721 gaggcgtcct gaatgtcccc atttcaccag ccctctccct gactcccacc atcttctcct
      781 atagcccgtc gccaggcctg agccccttca ccagcagcag ttgcttctcc ttcaaccctg
      841 aggaaatgaa acactacctt cattctcaag cctgttctgt gttcaactac catctgagtc
      901 cgcggacatt tcctcgttac ccagggctca tggttccacc gctgcagtgc cagatgcatc
      961 ctgaggagtc agcccagttt tccatcaagc tgcagccccc acctgtcggg cggaagaacc
     1021 gggagagggt ggagagcagc gaggaggcag cgcctgtcac tgtttccacg ctggctcctg
     1081 tccccccgag aattaaggtg gaaccagcct ctgagaagga tcctgagagt ctcaggcagt
     1141 cggcacgaga aaaggaggag cgcgctcaag aagagggcag tgtgccaagc aggaccacag
     1201 aagaggaaaa aggcaccatc tttgcccgcc cggctgcacc gcctgtctgg ccctctgtac
     1261 ccgttagcac cccaagtgaa gaacccctag aggtgactga agacagtgag gacaggcctg
     1321 gcaaagagcc cggtgcacct gagaagaaag aagatgccct gatgcccccc aagcttcggt
     1381 tgaagcggcg gtggaacgat gaccctgaag cccgggagct gagtaagaat ggcaagttcc
     1441 tctggaatgg gtcaggaccc cggggcttgg caacggctgc tgctgacgct tagaactgga
     1501 agttgattgg gagctgttta tactataatc aaacatacat gtatttatgt agcaggattt
     1561 cagggtgggg ggtggggagg gaattaggct ggtttgatcc ttctaggggc atagacttgt
     1621 atttttatgt ttgggggata ggatgggggt atcttctgtt gtaaattaga tgggatgtga
     1681 acacactttt tttcctggtg agtaggacat gggaagggta ttgaactgaa agaagaaaga
     1741 gcctctgttt cctgttgagg cttacacttt ctgacaaact cccagagggc caagatactg
     1801 ttgggtccca tgatagttca ggttccagac ttgtttcttt tctattgtat ttttatatgg
     1861 aaagccatta atgaatttat tttgctctga gacatacaca taaaagggaa aggggcgtgg
     1921 ttgggaggtt gagcagtgag gttgagcagt gagagaccat taatactaag tattttgcct
     1981 gaaatgtttc tttataatta tttcagggga ggaataagaa tctcagtctt acgggggcag
     2041 gaggatgttc aggtgttgct ctttttcttt ttccctttgt tgttgtttgg cttctttttt
     2101 ttttttcctt tttataaaat gttttcagga aacgtgaaat gtactgccag ttagagcggg
     2161 gctggcaagg cacaggcgct gagccttcag ctactttgtt gagacaggaa gccctgctgt
     2221 gaatttcttg gacatttcac ctacttcacc ttttaagaag ccatgaggag ttataaactc
     2281 ttgttcaggg aagaaagagg agggcaggag gatgtaaccc aatgccttta aaaacaaaaa
     2341 cacaacaatg ctcttttttt tttttcttca tggtgggttt ggggagccaa accaacgtgt
     2401 gactgagcga gttgactgag agacgtgaca gagttgaaga tgtctttctg cagtgtctgg
     2461 ttctcttatc gtcttcttaa gtcaaagcct taacaatgaa catacttcaa catgatacgg
     2521 gtctgtcaac gtaaacctgt aaaagggcat agacgtcttt tcagataatc caggagtgtt
     2581 ggaagatggt taaattttaa gctggtattt aatcatcccc ccttgatgta ttgggatagg
     2641 tagcaaaaag gcaggattgt gggagttaag ggcaggtgat acctggaaac acagaaggta
     2701 gctgggggta caagtggatg tttaggaagc tgaaagaagc ggtagacagg agacacagaa
     2761 gggagacaga tgccaagagg cctggtgtaa gtgaagcagt ggttgtctgt cctgttgtgg
     2821 tgttgccgtt cttgccatac ccattcccct agattgtact aattctcatg atcaattgac
     2881 tgtcctgcct gagaccccag gaattgtttc ttcatgggaa attcccttcc agcaacttca
     2941 aaggaatggg aaagtattga tcttacatga atcaaaagga gcctggatta ggggcagaga
     3001 gaaagaagcc acggccaact gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgcgcgc
     3061 gtgtgcgcac atgtaagtac acagtagtat acagaaatac cgaacatggc tcagatccac
     3121 gagcagcaga gagaagaaat aactgcgtct ctgatagggg caaggagtgg gcacggggat
     3181 gttgtctaga agttggagag atagattcct ggctccatct cagcctaggt gaactcagtg
     3241 tactaagagg cacttgaggg ttgtcttctc atggtggggg gggggggggt ctattttaaa
     3301 ctggagtgcg tgcgtgagag aggggcccag gagaggttcg agccggtggg tgagttgtta
     3361 ggtggcttaa gaggacttga gttcatcatg ctctttttcg gcaattgtcc gcccccttgt
     3421 ttgattcaaa ttccgtgagt gacttgtctt tccctgggaa aaggattagg agaatggtcc
     3481 ctgacaactc aggcttcggt caggctgcct ttggttggtt gtgtttttgt cggtttcttt
     3541 ctctgtacct cgacttacct cgaatcagaa agcaagccca ggcaggtgga agaggcatct
     3601 ctgcttggca ttgcccaatc taaccaggga ggctggctgc ccaccgtctc tgtccactag
     3661 aggggagggc cggcaggtgt cagtatgaac tcaggaatag aaacatgagg cctttaaaat
     3721 aagagggaga aaaatccgtg atgcaaacct gtaaccccct agaacccaag tgccagaatt
     3781 aattcctaga tgctgcttct gtttgaataa aaagtcacag cttttacact tgaaaaaaac
     3841 acactcaaaa aatgttcaac tccatgaaaa ctgtttttgg ctttaagaaa ttgtttggtg
     3901 tttaactgtt tcctttgatt gccattccac cagtaaattg ttggttgatt tgcactgcac
     3961 agtggggttg gggggagggt cctacacaga gccagacttg ggcttgcccg ggaagtggac
     4021 caggggatgt ggaggtcact gatatttcct ggagcaaagg ggtgggagat agtttttctt
     4081 cccggagccc actctgggca gcacctgtca ccagcctggc acaaagccag gcctttctct
     4141 tccgcgagca tctcatcact gaacagcagg tggaaagggg gggacaacac cagacgtatt
     4201 ttgcctcccc attttttcca ccttttgctg tgccaaatgt ttaacgtttt gcagatacag
     4261 atcttgaaca tgtattaaga acctgttcaa actgtttgct tttttgactc tagagaagaa
     4321 aacagtagag atctcttcag ggcatccagc cttgctgagc ttttcttttt tttttttttt
     4381 ttttaagaac ggctaggagt gaaatataaa caat
//
LOCUS       XM_032649888            3334 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X1, mRNA.
ACCESSION   XM_032649888
VERSION     XM_032649888.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3334
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762648"
     CDS             599..3196
                     /gene="TLR5"
                     /codon_start=1
                     /product="toll-like receptor 5 isoform X1"
                     /protein_id="XP_032505779.1"
                     /db_xref="GeneID:116762648"
                     /translation="MAELTVIMGDHLDLLLRMVLMASPALGISSCFFDGWRALYRSCN
                     LTQVPQVPNTTKSLLLSFNYIRTVTTASFPFLEQLQLLELGTQFTPLTIDKEAFQNLP
                     NLRILDLGKSQIDFLHPDAFQELPHLSELRLFYCGLSSAVLKDGYFRNLGSLARLDLS
                     KNQIQSLYLHHSFRELNSLKSIDLSLNQITIVCEHDLKPLQGKTLSFLSLADNKLYSR
                     VSVDWGKCLNPFRNMVLETLDVSGNGWAVDITRNFSNAINGSQIFSLVLTYHVMGSGF
                     GFTNIKDPDQHTFVGLARSSVIQLDLSHGFIFSLNFQLFETLKELKVLNLAYNKINNI
                     AHKAFYGLDNLQVLNISHNLLGELYNSNFYGLPKVTYIDLQKNHIGIIQDKTFRFLEK
                     LNTLDLRDNALKTIDFLPSIPSIFLSGNKLATLPNIALTANFITLSENRLENLDNLYF
                     LLQVPHLQILILNQNRFSFCNQDHAPSENPSLEELFLEENMLQLAWEAGFCWNVFKGL
                     SHLRVLYLNKNYLNFLPPGVFRHLTGLRGLSLKDNRLTVLFPGDLPANLEVLDISRNQ
                     LLSPDPDLFASLSAVDITHNKFICECELSTFISWLNQTNVTIFGSPADIYCMYPSSMA
                     GASLYSLSTEDCDEEEVLESLKFSLFTFFTVTLTLFLVAILIVTKFRGFCFICYKKTQ
                     RLVFKGPIKGRESETYKYDAYLCFSSKDFEWVQNALLKHLDAQYSDRNRFNLCFEERD
                     FLPGENHIANIQDALWSSRKVVCLVSRHFLRDGWCLEAFSYAQSRCLADLSGALIMVV
                     VGSLSQYQLMKHRSIRGFVQKQQYLRWPEDLQDVGWFLNKLSQLILNKEKERKKDNDI
                     QLQSVPTIS"
     misc_feature    <869..1012
                     /gene="TLR5"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    <905..>1663
                     /gene="TLR5"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    908..979
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    980..1057
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1058..1132
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1133..1210
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1211..1282
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1496..1558
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <1517..>2332
                     /gene="TLR5"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1559..1630
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1631..1702
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1703..1774
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1775..1861
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1862..1966
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1967..2041
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2042..2128
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2129..2200
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2201..2257
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2267..2332
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2279..>2521
                     /gene="TLR5"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2696..3142
                     /gene="TLR5"
                     /note="TIR domain; Region: TIR; pfam01582"
                     /db_xref="CDD:396246"
ORIGIN      
        1 cgccgcttct gcgactggga ggaacgggac ttggcgcgcg gcgccgggag acttccccgg
       61 aggggcaggt ggcttcacta tcttccctgg aaaagggaga cagccaccct caagcagagc
      121 caaggaaatc ccagacagtt actgagccgc tcaacaaaag gccttgaacc tccgtctctc
      181 cgccctcata acaccaggta gagactccaa gtggtttcca aaaggaatac atttctggtg
      241 aggtgcagtt ggataaatgt ctgtctactt cagcaagcaa gaaatattag aggattccac
      301 atcaataact gggctcttca ttcggtaact ggagggtcct caaaagcctc tgtggatgct
      361 tccctagggg aaacaaaagc cctttctctc gattctccag gaaaacactg acgaccatcc
      421 tcccatcatc gaggcgagga ggtccccatt gtctcagaaa cggaagcctt taaacaatca
      481 gggacccagt gcctctagaa tcagaacata ctagaagccc cttctgttag gactggagaa
      541 gccctgtgtg attctaagta gctgagtgat ttttaggaag gaatgcctat gtcgcctgat
      601 ggcagaacta acagtgatca tgggagacca ccttgacctt ctcttaagaa tggtgctcat
      661 ggccagtccc gcgcttggaa tttcctcctg cttcttcgat ggttggagag ccttatatcg
      721 ttcctgcaac ctcacccaag tccctcaggt ccccaacacc accaagagtc tcctgctcag
      781 cttcaactac atcaggacag tcacaaccgc atccttcccc ttcctggagc agctgcagct
      841 gctggagctc gggactcagt ttaccccctt gaccattgac aaagaagcct tccaaaatct
      901 gcccaatctc agaatcttgg acctgggcaa aagtcagata gacttcttgc acccagatgc
      961 ttttcaggaa ctgccccatc tctccgaact tcgactgttt tactgtggtc tttccagtgc
     1021 tgtattaaaa gatggttatt tcagaaactt ggggtctttg gctcgcttgg acctatccaa
     1081 aaatcagatt cagagtcttt accttcatca ttcattccgg gaattgaatt ccttgaagtc
     1141 catcgatctt tccctcaacc aaataaccat tgtttgtgag cacgacctca aacccctcca
     1201 aggaaaaaca ctctcctttt taagccttgc tgataataag ctgtacagca gggtctcagt
     1261 ggactggggg aagtgtctga acccattcag aaacatggtc ctggaaaccc tagatgtttc
     1321 tggcaatggc tgggcagtgg acatcacaag aaacttcagc aatgccatca atggaagcca
     1381 gattttctct ttggttctta cctatcacgt gatgggttct gggtttggct tcactaacat
     1441 caaagaccct gaccagcaca cctttgtcgg cctggccaga agctcagtga tacagctgga
     1501 cctttcacat gggtttatct tctccctgaa cttccaactc ttcgagacgc tcaaggagtt
     1561 gaaggttctg aatctcgcct acaacaagat aaacaatatt gcacacaaag cattttatgg
     1621 actcgacaac ctccaagttc tcaatatatc acataacctt ctgggggaat tgtataattc
     1681 taatttctat ggactaccta aggtaaccta tattgatctg caaaagaatc acatcgggat
     1741 cattcaggac aaaacattca gattcctgga aaagttaaac accttggatc tccgggataa
     1801 tgcccttaaa actattgatt ttcttccaag catacctagt atcttcttga gtggcaataa
     1861 actggctact ttgccaaaca tcgcacttac agctaacttc atcaccttat cagagaatag
     1921 gctggaaaat ctggataatc tctacttcct tctccaggta ccccatctcc agattctcat
     1981 tttaaatcaa aatcgctttt ccttttgtaa ccaagaccat gccccttcag agaaccccag
     2041 cttagaagag cttttccttg aagaaaatat gttgcagctt gcctgggaag ccgggttctg
     2101 ctggaatgtt tttaaagggc tttcccatct ccgagtccta tatttgaata aaaactacct
     2161 gaatttcctt ccaccaggag tatttcgtca tctgactgga ctgaggggac tcagcctcaa
     2221 ggacaacagg ctgaccgttc tttttcctgg tgacttacct gctaatttag aggtcctgga
     2281 tatatccaga aaccagctcc tctctcctga tcctgattta tttgcatcgc tgagtgccgt
     2341 ggacataact cataacaagt tcatctgtga gtgtgaactt agcactttta tcagttggct
     2401 caatcaaacc aacgtcacaa tatttggctc tccggcagac atatactgca tgtacccgag
     2461 ctccatggct ggggcttccc tctactctct ttccacggaa gactgtgatg aagaggaagt
     2521 tttagagtcc ctaaagtttt cccttttcac cttcttcact gtcactttga ctctgttcct
     2581 cgtggccatc ctcatcgtta cgaagtttcg ggggttttgt ttcatctgtt ataagaaaac
     2641 ccagagactg gtgttcaagg gccccatcaa gggaagagaa tcagagacgt acaaatacga
     2701 tgcctatttg tgcttcagta gcaaagactt tgaatgggtg cagaatgctt tgctcaaaca
     2761 cctggatgcc cagtacagcg atcgaaacag atttaacctg tgctttgaag agagagactt
     2821 tttgcctggg gaaaaccaca tcgccaacat ccaggatgcc ctgtggagca gcagaaaggt
     2881 tgtctgtctc gtgagcagac acttccttag agacgggtgg tgcctcgaag ccttcagtta
     2941 cgcccagagc aggtgcttag ctgacctcag tggcgccctc atcatggtgg tggtggggtc
     3001 cctgtcccag taccagctga tgaaacatcg ctccatccga ggattcgtcc agaaacagca
     3061 gtacttgagg tggcctgagg atctccagga tgttggctgg tttctcaaca aactctctca
     3121 gctcattcta aataaagaaa aggaaaggaa gaaagacaat gacattcagt tgcaaagtgt
     3181 acccaccatt tcttagtcaa aggagcactt ttccacttat ctcaagccac aagcaactct
     3241 tcccttttta tttccactaa gttaccattt ggggtccttt atgaagttgt tgttttccta
     3301 cgatgagaac cacataaatc tcttgatttt cata
//
LOCUS       XM_032649896            3553 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X2, mRNA.
ACCESSION   XM_032649896
VERSION     XM_032649896.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3553
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762648"
     CDS             818..3415
                     /gene="TLR5"
                     /codon_start=1
                     /product="toll-like receptor 5 isoform X1"
                     /protein_id="XP_032505787.1"
                     /db_xref="GeneID:116762648"
                     /translation="MAELTVIMGDHLDLLLRMVLMASPALGISSCFFDGWRALYRSCN
                     LTQVPQVPNTTKSLLLSFNYIRTVTTASFPFLEQLQLLELGTQFTPLTIDKEAFQNLP
                     NLRILDLGKSQIDFLHPDAFQELPHLSELRLFYCGLSSAVLKDGYFRNLGSLARLDLS
                     KNQIQSLYLHHSFRELNSLKSIDLSLNQITIVCEHDLKPLQGKTLSFLSLADNKLYSR
                     VSVDWGKCLNPFRNMVLETLDVSGNGWAVDITRNFSNAINGSQIFSLVLTYHVMGSGF
                     GFTNIKDPDQHTFVGLARSSVIQLDLSHGFIFSLNFQLFETLKELKVLNLAYNKINNI
                     AHKAFYGLDNLQVLNISHNLLGELYNSNFYGLPKVTYIDLQKNHIGIIQDKTFRFLEK
                     LNTLDLRDNALKTIDFLPSIPSIFLSGNKLATLPNIALTANFITLSENRLENLDNLYF
                     LLQVPHLQILILNQNRFSFCNQDHAPSENPSLEELFLEENMLQLAWEAGFCWNVFKGL
                     SHLRVLYLNKNYLNFLPPGVFRHLTGLRGLSLKDNRLTVLFPGDLPANLEVLDISRNQ
                     LLSPDPDLFASLSAVDITHNKFICECELSTFISWLNQTNVTIFGSPADIYCMYPSSMA
                     GASLYSLSTEDCDEEEVLESLKFSLFTFFTVTLTLFLVAILIVTKFRGFCFICYKKTQ
                     RLVFKGPIKGRESETYKYDAYLCFSSKDFEWVQNALLKHLDAQYSDRNRFNLCFEERD
                     FLPGENHIANIQDALWSSRKVVCLVSRHFLRDGWCLEAFSYAQSRCLADLSGALIMVV
                     VGSLSQYQLMKHRSIRGFVQKQQYLRWPEDLQDVGWFLNKLSQLILNKEKERKKDNDI
                     QLQSVPTIS"
     misc_feature    <1088..1231
                     /gene="TLR5"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    <1124..>1882
                     /gene="TLR5"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    1127..1198
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1199..1276
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1277..1351
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1352..1429
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1430..1501
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1715..1777
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <1736..>2551
                     /gene="TLR5"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1778..1849
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1850..1921
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1922..1993
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1994..2080
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2081..2185
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2186..2260
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2261..2347
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2348..2419
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2420..2476
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2486..2551
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2498..>2740
                     /gene="TLR5"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2915..3361
                     /gene="TLR5"
                     /note="TIR domain; Region: TIR; pfam01582"
                     /db_xref="CDD:396246"
ORIGIN      
        1 cgccgcttct gcgactggga ggaacgggac ttggcgcgcg gcgccgggag acttccccgg
       61 aggggcaggt ggcttcacta tcttccctgg aaaagggaga cagccaccct caagcagagc
      121 caaggaaatc ccagacagtt actgagccgc tcaacaaaag gccttgaacc tccgtctctc
      181 cgccctcata acaccaggta gagactccaa gaatgcagaa agcagattca aatcttcagt
      241 caggtctcaa gcttcaggaa ttgccagcac tggttttgca gcgccctccc ccatttgggg
      301 gccacgaccc acacagtgtg ctcagcttta tgggaccaac tcaggtttga ggcattgttc
      361 ctgcccttca gaagcttcca ggttcagggg aggagagaaa accagcacct gcgtaacaat
      421 tagagagcaa tggtttccaa aaggaataca tttctggtga ggtgcagttg gataaatgtc
      481 tgtctacttc agcaagcaag aaatattaga ggattccaca tcaataactg ggctcttcat
      541 tcggtaactg gagggtcctc aaaagcctct gtggatgctt ccctagggga aacaaaagcc
      601 ctttctctcg attctccagg aaaacactga cgaccatcct cccatcatcg aggcgaggag
      661 gtccccattg tctcagaaac ggaagccttt aaacaatcag ggacccagtg cctctagaat
      721 cagaacatac tagaagcccc ttctgttagg actggagaag ccctgtgtga ttctaagtag
      781 ctgagtgatt tttaggaagg aatgcctatg tcgcctgatg gcagaactaa cagtgatcat
      841 gggagaccac cttgaccttc tcttaagaat ggtgctcatg gccagtcccg cgcttggaat
      901 ttcctcctgc ttcttcgatg gttggagagc cttatatcgt tcctgcaacc tcacccaagt
      961 ccctcaggtc cccaacacca ccaagagtct cctgctcagc ttcaactaca tcaggacagt
     1021 cacaaccgca tccttcccct tcctggagca gctgcagctg ctggagctcg ggactcagtt
     1081 tacccccttg accattgaca aagaagcctt ccaaaatctg cccaatctca gaatcttgga
     1141 cctgggcaaa agtcagatag acttcttgca cccagatgct tttcaggaac tgccccatct
     1201 ctccgaactt cgactgtttt actgtggtct ttccagtgct gtattaaaag atggttattt
     1261 cagaaacttg gggtctttgg ctcgcttgga cctatccaaa aatcagattc agagtcttta
     1321 ccttcatcat tcattccggg aattgaattc cttgaagtcc atcgatcttt ccctcaacca
     1381 aataaccatt gtttgtgagc acgacctcaa acccctccaa ggaaaaacac tctccttttt
     1441 aagccttgct gataataagc tgtacagcag ggtctcagtg gactggggga agtgtctgaa
     1501 cccattcaga aacatggtcc tggaaaccct agatgtttct ggcaatggct gggcagtgga
     1561 catcacaaga aacttcagca atgccatcaa tggaagccag attttctctt tggttcttac
     1621 ctatcacgtg atgggttctg ggtttggctt cactaacatc aaagaccctg accagcacac
     1681 ctttgtcggc ctggccagaa gctcagtgat acagctggac ctttcacatg ggtttatctt
     1741 ctccctgaac ttccaactct tcgagacgct caaggagttg aaggttctga atctcgccta
     1801 caacaagata aacaatattg cacacaaagc attttatgga ctcgacaacc tccaagttct
     1861 caatatatca cataaccttc tgggggaatt gtataattct aatttctatg gactacctaa
     1921 ggtaacctat attgatctgc aaaagaatca catcgggatc attcaggaca aaacattcag
     1981 attcctggaa aagttaaaca ccttggatct ccgggataat gcccttaaaa ctattgattt
     2041 tcttccaagc atacctagta tcttcttgag tggcaataaa ctggctactt tgccaaacat
     2101 cgcacttaca gctaacttca tcaccttatc agagaatagg ctggaaaatc tggataatct
     2161 ctacttcctt ctccaggtac cccatctcca gattctcatt ttaaatcaaa atcgcttttc
     2221 cttttgtaac caagaccatg ccccttcaga gaaccccagc ttagaagagc ttttccttga
     2281 agaaaatatg ttgcagcttg cctgggaagc cgggttctgc tggaatgttt ttaaagggct
     2341 ttcccatctc cgagtcctat atttgaataa aaactacctg aatttccttc caccaggagt
     2401 atttcgtcat ctgactggac tgaggggact cagcctcaag gacaacaggc tgaccgttct
     2461 ttttcctggt gacttacctg ctaatttaga ggtcctggat atatccagaa accagctcct
     2521 ctctcctgat cctgatttat ttgcatcgct gagtgccgtg gacataactc ataacaagtt
     2581 catctgtgag tgtgaactta gcacttttat cagttggctc aatcaaacca acgtcacaat
     2641 atttggctct ccggcagaca tatactgcat gtacccgagc tccatggctg gggcttccct
     2701 ctactctctt tccacggaag actgtgatga agaggaagtt ttagagtccc taaagttttc
     2761 ccttttcacc ttcttcactg tcactttgac tctgttcctc gtggccatcc tcatcgttac
     2821 gaagtttcgg gggttttgtt tcatctgtta taagaaaacc cagagactgg tgttcaaggg
     2881 ccccatcaag ggaagagaat cagagacgta caaatacgat gcctatttgt gcttcagtag
     2941 caaagacttt gaatgggtgc agaatgcttt gctcaaacac ctggatgccc agtacagcga
     3001 tcgaaacaga tttaacctgt gctttgaaga gagagacttt ttgcctgggg aaaaccacat
     3061 cgccaacatc caggatgccc tgtggagcag cagaaaggtt gtctgtctcg tgagcagaca
     3121 cttccttaga gacgggtggt gcctcgaagc cttcagttac gcccagagca ggtgcttagc
     3181 tgacctcagt ggcgccctca tcatggtggt ggtggggtcc ctgtcccagt accagctgat
     3241 gaaacatcgc tccatccgag gattcgtcca gaaacagcag tacttgaggt ggcctgagga
     3301 tctccaggat gttggctggt ttctcaacaa actctctcag ctcattctaa ataaagaaaa
     3361 ggaaaggaag aaagacaatg acattcagtt gcaaagtgta cccaccattt cttagtcaaa
     3421 ggagcacttt tccacttatc tcaagccaca agcaactctt ccctttttat ttccactaag
     3481 ttaccatttg gggtccttta tgaagttgtt gttttcctac gatgagaacc acataaatct
     3541 cttgattttc ata
//
LOCUS       XM_032649902            3177 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X3, mRNA.
ACCESSION   XM_032649902
VERSION     XM_032649902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3177
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3177
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762648"
     CDS             442..3039
                     /gene="TLR5"
                     /codon_start=1
                     /product="toll-like receptor 5 isoform X1"
                     /protein_id="XP_032505793.1"
                     /db_xref="GeneID:116762648"
                     /translation="MAELTVIMGDHLDLLLRMVLMASPALGISSCFFDGWRALYRSCN
                     LTQVPQVPNTTKSLLLSFNYIRTVTTASFPFLEQLQLLELGTQFTPLTIDKEAFQNLP
                     NLRILDLGKSQIDFLHPDAFQELPHLSELRLFYCGLSSAVLKDGYFRNLGSLARLDLS
                     KNQIQSLYLHHSFRELNSLKSIDLSLNQITIVCEHDLKPLQGKTLSFLSLADNKLYSR
                     VSVDWGKCLNPFRNMVLETLDVSGNGWAVDITRNFSNAINGSQIFSLVLTYHVMGSGF
                     GFTNIKDPDQHTFVGLARSSVIQLDLSHGFIFSLNFQLFETLKELKVLNLAYNKINNI
                     AHKAFYGLDNLQVLNISHNLLGELYNSNFYGLPKVTYIDLQKNHIGIIQDKTFRFLEK
                     LNTLDLRDNALKTIDFLPSIPSIFLSGNKLATLPNIALTANFITLSENRLENLDNLYF
                     LLQVPHLQILILNQNRFSFCNQDHAPSENPSLEELFLEENMLQLAWEAGFCWNVFKGL
                     SHLRVLYLNKNYLNFLPPGVFRHLTGLRGLSLKDNRLTVLFPGDLPANLEVLDISRNQ
                     LLSPDPDLFASLSAVDITHNKFICECELSTFISWLNQTNVTIFGSPADIYCMYPSSMA
                     GASLYSLSTEDCDEEEVLESLKFSLFTFFTVTLTLFLVAILIVTKFRGFCFICYKKTQ
                     RLVFKGPIKGRESETYKYDAYLCFSSKDFEWVQNALLKHLDAQYSDRNRFNLCFEERD
                     FLPGENHIANIQDALWSSRKVVCLVSRHFLRDGWCLEAFSYAQSRCLADLSGALIMVV
                     VGSLSQYQLMKHRSIRGFVQKQQYLRWPEDLQDVGWFLNKLSQLILNKEKERKKDNDI
                     QLQSVPTIS"
     misc_feature    <712..855
                     /gene="TLR5"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    <748..>1506
                     /gene="TLR5"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    751..822
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    823..900
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    901..975
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    976..1053
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1054..1125
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1339..1401
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <1360..>2175
                     /gene="TLR5"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1402..1473
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1474..1545
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1546..1617
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1618..1704
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1705..1809
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1810..1884
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1885..1971
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1972..2043
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2044..2100
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2110..2175
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2122..>2364
                     /gene="TLR5"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2539..2985
                     /gene="TLR5"
                     /note="TIR domain; Region: TIR; pfam01582"
                     /db_xref="CDD:396246"
ORIGIN      
        1 cgccgcttct gcgactggga ggaacgggac ttggcgcgcg gcgccgggag acttccccgg
       61 aggggcaggt ggcttcacta tcttccctgg aaaagggaga cagccaccct caagcagagc
      121 caaggaaatc ccagacagtt actgagccgc tcaacaaaag gccttgaacc tccgtctctc
      181 cgccctcata acaccaggta gagactccaa gggaaacaaa agccctttct ctcgattctc
      241 caggaaaaca ctgacgacca tcctcccatc atcgaggcga ggaggtcccc attgtctcag
      301 aaacggaagc ctttaaacaa tcagggaccc agtgcctcta gaatcagaac atactagaag
      361 ccccttctgt taggactgga gaagccctgt gtgattctaa gtagctgagt gatttttagg
      421 aaggaatgcc tatgtcgcct gatggcagaa ctaacagtga tcatgggaga ccaccttgac
      481 cttctcttaa gaatggtgct catggccagt cccgcgcttg gaatttcctc ctgcttcttc
      541 gatggttgga gagccttata tcgttcctgc aacctcaccc aagtccctca ggtccccaac
      601 accaccaaga gtctcctgct cagcttcaac tacatcagga cagtcacaac cgcatccttc
      661 cccttcctgg agcagctgca gctgctggag ctcgggactc agtttacccc cttgaccatt
      721 gacaaagaag ccttccaaaa tctgcccaat ctcagaatct tggacctggg caaaagtcag
      781 atagacttct tgcacccaga tgcttttcag gaactgcccc atctctccga acttcgactg
      841 ttttactgtg gtctttccag tgctgtatta aaagatggtt atttcagaaa cttggggtct
      901 ttggctcgct tggacctatc caaaaatcag attcagagtc tttaccttca tcattcattc
      961 cgggaattga attccttgaa gtccatcgat ctttccctca accaaataac cattgtttgt
     1021 gagcacgacc tcaaacccct ccaaggaaaa acactctcct ttttaagcct tgctgataat
     1081 aagctgtaca gcagggtctc agtggactgg gggaagtgtc tgaacccatt cagaaacatg
     1141 gtcctggaaa ccctagatgt ttctggcaat ggctgggcag tggacatcac aagaaacttc
     1201 agcaatgcca tcaatggaag ccagattttc tctttggttc ttacctatca cgtgatgggt
     1261 tctgggtttg gcttcactaa catcaaagac cctgaccagc acacctttgt cggcctggcc
     1321 agaagctcag tgatacagct ggacctttca catgggttta tcttctccct gaacttccaa
     1381 ctcttcgaga cgctcaagga gttgaaggtt ctgaatctcg cctacaacaa gataaacaat
     1441 attgcacaca aagcatttta tggactcgac aacctccaag ttctcaatat atcacataac
     1501 cttctggggg aattgtataa ttctaatttc tatggactac ctaaggtaac ctatattgat
     1561 ctgcaaaaga atcacatcgg gatcattcag gacaaaacat tcagattcct ggaaaagtta
     1621 aacaccttgg atctccggga taatgccctt aaaactattg attttcttcc aagcatacct
     1681 agtatcttct tgagtggcaa taaactggct actttgccaa acatcgcact tacagctaac
     1741 ttcatcacct tatcagagaa taggctggaa aatctggata atctctactt ccttctccag
     1801 gtaccccatc tccagattct cattttaaat caaaatcgct tttccttttg taaccaagac
     1861 catgcccctt cagagaaccc cagcttagaa gagcttttcc ttgaagaaaa tatgttgcag
     1921 cttgcctggg aagccgggtt ctgctggaat gtttttaaag ggctttccca tctccgagtc
     1981 ctatatttga ataaaaacta cctgaatttc cttccaccag gagtatttcg tcatctgact
     2041 ggactgaggg gactcagcct caaggacaac aggctgaccg ttctttttcc tggtgactta
     2101 cctgctaatt tagaggtcct ggatatatcc agaaaccagc tcctctctcc tgatcctgat
     2161 ttatttgcat cgctgagtgc cgtggacata actcataaca agttcatctg tgagtgtgaa
     2221 cttagcactt ttatcagttg gctcaatcaa accaacgtca caatatttgg ctctccggca
     2281 gacatatact gcatgtaccc gagctccatg gctggggctt ccctctactc tctttccacg
     2341 gaagactgtg atgaagagga agttttagag tccctaaagt tttccctttt caccttcttc
     2401 actgtcactt tgactctgtt cctcgtggcc atcctcatcg ttacgaagtt tcgggggttt
     2461 tgtttcatct gttataagaa aacccagaga ctggtgttca agggccccat caagggaaga
     2521 gaatcagaga cgtacaaata cgatgcctat ttgtgcttca gtagcaaaga ctttgaatgg
     2581 gtgcagaatg ctttgctcaa acacctggat gcccagtaca gcgatcgaaa cagatttaac
     2641 ctgtgctttg aagagagaga ctttttgcct ggggaaaacc acatcgccaa catccaggat
     2701 gccctgtgga gcagcagaaa ggttgtctgt ctcgtgagca gacacttcct tagagacggg
     2761 tggtgcctcg aagccttcag ttacgcccag agcaggtgct tagctgacct cagtggcgcc
     2821 ctcatcatgg tggtggtggg gtccctgtcc cagtaccagc tgatgaaaca tcgctccatc
     2881 cgaggattcg tccagaaaca gcagtacttg aggtggcctg aggatctcca ggatgttggc
     2941 tggtttctca acaaactctc tcagctcatt ctaaataaag aaaaggaaag gaagaaagac
     3001 aatgacattc agttgcaaag tgtacccacc atttcttagt caaaggagca cttttccact
     3061 tatctcaagc cacaagcaac tcttcccttt ttatttccac taagttacca tttggggtcc
     3121 tttatgaagt tgttgttttc ctacgatgag aaccacataa atctcttgat tttcata
//
LOCUS       XM_032649913            3290 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X4, mRNA.
ACCESSION   XM_032649913
VERSION     XM_032649913.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3290
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762648"
     CDS             555..3152
                     /gene="TLR5"
                     /codon_start=1
                     /product="toll-like receptor 5 isoform X1"
                     /protein_id="XP_032505804.1"
                     /db_xref="GeneID:116762648"
                     /translation="MAELTVIMGDHLDLLLRMVLMASPALGISSCFFDGWRALYRSCN
                     LTQVPQVPNTTKSLLLSFNYIRTVTTASFPFLEQLQLLELGTQFTPLTIDKEAFQNLP
                     NLRILDLGKSQIDFLHPDAFQELPHLSELRLFYCGLSSAVLKDGYFRNLGSLARLDLS
                     KNQIQSLYLHHSFRELNSLKSIDLSLNQITIVCEHDLKPLQGKTLSFLSLADNKLYSR
                     VSVDWGKCLNPFRNMVLETLDVSGNGWAVDITRNFSNAINGSQIFSLVLTYHVMGSGF
                     GFTNIKDPDQHTFVGLARSSVIQLDLSHGFIFSLNFQLFETLKELKVLNLAYNKINNI
                     AHKAFYGLDNLQVLNISHNLLGELYNSNFYGLPKVTYIDLQKNHIGIIQDKTFRFLEK
                     LNTLDLRDNALKTIDFLPSIPSIFLSGNKLATLPNIALTANFITLSENRLENLDNLYF
                     LLQVPHLQILILNQNRFSFCNQDHAPSENPSLEELFLEENMLQLAWEAGFCWNVFKGL
                     SHLRVLYLNKNYLNFLPPGVFRHLTGLRGLSLKDNRLTVLFPGDLPANLEVLDISRNQ
                     LLSPDPDLFASLSAVDITHNKFICECELSTFISWLNQTNVTIFGSPADIYCMYPSSMA
                     GASLYSLSTEDCDEEEVLESLKFSLFTFFTVTLTLFLVAILIVTKFRGFCFICYKKTQ
                     RLVFKGPIKGRESETYKYDAYLCFSSKDFEWVQNALLKHLDAQYSDRNRFNLCFEERD
                     FLPGENHIANIQDALWSSRKVVCLVSRHFLRDGWCLEAFSYAQSRCLADLSGALIMVV
                     VGSLSQYQLMKHRSIRGFVQKQQYLRWPEDLQDVGWFLNKLSQLILNKEKERKKDNDI
                     QLQSVPTIS"
     misc_feature    <825..968
                     /gene="TLR5"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    <861..>1619
                     /gene="TLR5"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    864..935
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    936..1013
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1014..1088
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1089..1166
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1167..1238
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1452..1514
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <1473..>2288
                     /gene="TLR5"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1515..1586
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1587..1658
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1659..1730
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1731..1817
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1818..1922
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1923..1997
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1998..2084
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2085..2156
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2157..2213
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2223..2288
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2235..>2477
                     /gene="TLR5"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2652..3098
                     /gene="TLR5"
                     /note="TIR domain; Region: TIR; pfam01582"
                     /db_xref="CDD:396246"
ORIGIN      
        1 cgccgcttct gcgactggga ggaacgggac ttggcgcgcg gcgccgggag acttccccgg
       61 aggggcaggt ggcttcacta tcttccctgg aaaagggaga cagccaccct caagcagagc
      121 caaggaaatc ccagacagtt actgagccgc tcaacaaaag gccttgaacc tccgtctctc
      181 cgccctcata acaccaggta gagactccaa gtggtttcca aaaggaatac atttctggtg
      241 aggtgcagtt ggataaatgt ctgtctactt cagcaagcaa gaaatattag aggattccac
      301 atcaataact gggctcttca ttcgggaaac aaaagccctt tctctcgatt ctccaggaaa
      361 acactgacga ccatcctccc atcatcgagg cgaggaggtc cccattgtct cagaaacgga
      421 agcctttaaa caatcaggga cccagtgcct ctagaatcag aacatactag aagccccttc
      481 tgttaggact ggagaagccc tgtgtgattc taagtagctg agtgattttt aggaaggaat
      541 gcctatgtcg cctgatggca gaactaacag tgatcatggg agaccacctt gaccttctct
      601 taagaatggt gctcatggcc agtcccgcgc ttggaatttc ctcctgcttc ttcgatggtt
      661 ggagagcctt atatcgttcc tgcaacctca cccaagtccc tcaggtcccc aacaccacca
      721 agagtctcct gctcagcttc aactacatca ggacagtcac aaccgcatcc ttccccttcc
      781 tggagcagct gcagctgctg gagctcggga ctcagtttac ccccttgacc attgacaaag
      841 aagccttcca aaatctgccc aatctcagaa tcttggacct gggcaaaagt cagatagact
      901 tcttgcaccc agatgctttt caggaactgc cccatctctc cgaacttcga ctgttttact
      961 gtggtctttc cagtgctgta ttaaaagatg gttatttcag aaacttgggg tctttggctc
     1021 gcttggacct atccaaaaat cagattcaga gtctttacct tcatcattca ttccgggaat
     1081 tgaattcctt gaagtccatc gatctttccc tcaaccaaat aaccattgtt tgtgagcacg
     1141 acctcaaacc cctccaagga aaaacactct cctttttaag ccttgctgat aataagctgt
     1201 acagcagggt ctcagtggac tgggggaagt gtctgaaccc attcagaaac atggtcctgg
     1261 aaaccctaga tgtttctggc aatggctggg cagtggacat cacaagaaac ttcagcaatg
     1321 ccatcaatgg aagccagatt ttctctttgg ttcttaccta tcacgtgatg ggttctgggt
     1381 ttggcttcac taacatcaaa gaccctgacc agcacacctt tgtcggcctg gccagaagct
     1441 cagtgataca gctggacctt tcacatgggt ttatcttctc cctgaacttc caactcttcg
     1501 agacgctcaa ggagttgaag gttctgaatc tcgcctacaa caagataaac aatattgcac
     1561 acaaagcatt ttatggactc gacaacctcc aagttctcaa tatatcacat aaccttctgg
     1621 gggaattgta taattctaat ttctatggac tacctaaggt aacctatatt gatctgcaaa
     1681 agaatcacat cgggatcatt caggacaaaa cattcagatt cctggaaaag ttaaacacct
     1741 tggatctccg ggataatgcc cttaaaacta ttgattttct tccaagcata cctagtatct
     1801 tcttgagtgg caataaactg gctactttgc caaacatcgc acttacagct aacttcatca
     1861 ccttatcaga gaataggctg gaaaatctgg ataatctcta cttccttctc caggtacccc
     1921 atctccagat tctcatttta aatcaaaatc gcttttcctt ttgtaaccaa gaccatgccc
     1981 cttcagagaa ccccagctta gaagagcttt tccttgaaga aaatatgttg cagcttgcct
     2041 gggaagccgg gttctgctgg aatgttttta aagggctttc ccatctccga gtcctatatt
     2101 tgaataaaaa ctacctgaat ttccttccac caggagtatt tcgtcatctg actggactga
     2161 ggggactcag cctcaaggac aacaggctga ccgttctttt tcctggtgac ttacctgcta
     2221 atttagaggt cctggatata tccagaaacc agctcctctc tcctgatcct gatttatttg
     2281 catcgctgag tgccgtggac ataactcata acaagttcat ctgtgagtgt gaacttagca
     2341 cttttatcag ttggctcaat caaaccaacg tcacaatatt tggctctccg gcagacatat
     2401 actgcatgta cccgagctcc atggctgggg cttccctcta ctctctttcc acggaagact
     2461 gtgatgaaga ggaagtttta gagtccctaa agttttccct tttcaccttc ttcactgtca
     2521 ctttgactct gttcctcgtg gccatcctca tcgttacgaa gtttcggggg ttttgtttca
     2581 tctgttataa gaaaacccag agactggtgt tcaagggccc catcaaggga agagaatcag
     2641 agacgtacaa atacgatgcc tatttgtgct tcagtagcaa agactttgaa tgggtgcaga
     2701 atgctttgct caaacacctg gatgcccagt acagcgatcg aaacagattt aacctgtgct
     2761 ttgaagagag agactttttg cctggggaaa accacatcgc caacatccag gatgccctgt
     2821 ggagcagcag aaaggttgtc tgtctcgtga gcagacactt ccttagagac gggtggtgcc
     2881 tcgaagcctt cagttacgcc cagagcaggt gcttagctga cctcagtggc gccctcatca
     2941 tggtggtggt ggggtccctg tcccagtacc agctgatgaa acatcgctcc atccgaggat
     3001 tcgtccagaa acagcagtac ttgaggtggc ctgaggatct ccaggatgtt ggctggtttc
     3061 tcaacaaact ctctcagctc attctaaata aagaaaagga aaggaagaaa gacaatgaca
     3121 ttcagttgca aagtgtaccc accatttctt agtcaaagga gcacttttcc acttatctca
     3181 agccacaagc aactcttccc tttttatttc cactaagtta ccatttgggg tcctttatga
     3241 agttgttgtt ttcctacgat gagaaccaca taaatctctt gattttcata
//
LOCUS       XM_032649923            3331 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X5, mRNA.
ACCESSION   XM_032649923
VERSION     XM_032649923.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3331
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3331
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762648"
     CDS             596..3193
                     /gene="TLR5"
                     /codon_start=1
                     /product="toll-like receptor 5 isoform X1"
                     /protein_id="XP_032505814.1"
                     /db_xref="GeneID:116762648"
                     /translation="MAELTVIMGDHLDLLLRMVLMASPALGISSCFFDGWRALYRSCN
                     LTQVPQVPNTTKSLLLSFNYIRTVTTASFPFLEQLQLLELGTQFTPLTIDKEAFQNLP
                     NLRILDLGKSQIDFLHPDAFQELPHLSELRLFYCGLSSAVLKDGYFRNLGSLARLDLS
                     KNQIQSLYLHHSFRELNSLKSIDLSLNQITIVCEHDLKPLQGKTLSFLSLADNKLYSR
                     VSVDWGKCLNPFRNMVLETLDVSGNGWAVDITRNFSNAINGSQIFSLVLTYHVMGSGF
                     GFTNIKDPDQHTFVGLARSSVIQLDLSHGFIFSLNFQLFETLKELKVLNLAYNKINNI
                     AHKAFYGLDNLQVLNISHNLLGELYNSNFYGLPKVTYIDLQKNHIGIIQDKTFRFLEK
                     LNTLDLRDNALKTIDFLPSIPSIFLSGNKLATLPNIALTANFITLSENRLENLDNLYF
                     LLQVPHLQILILNQNRFSFCNQDHAPSENPSLEELFLEENMLQLAWEAGFCWNVFKGL
                     SHLRVLYLNKNYLNFLPPGVFRHLTGLRGLSLKDNRLTVLFPGDLPANLEVLDISRNQ
                     LLSPDPDLFASLSAVDITHNKFICECELSTFISWLNQTNVTIFGSPADIYCMYPSSMA
                     GASLYSLSTEDCDEEEVLESLKFSLFTFFTVTLTLFLVAILIVTKFRGFCFICYKKTQ
                     RLVFKGPIKGRESETYKYDAYLCFSSKDFEWVQNALLKHLDAQYSDRNRFNLCFEERD
                     FLPGENHIANIQDALWSSRKVVCLVSRHFLRDGWCLEAFSYAQSRCLADLSGALIMVV
                     VGSLSQYQLMKHRSIRGFVQKQQYLRWPEDLQDVGWFLNKLSQLILNKEKERKKDNDI
                     QLQSVPTIS"
     misc_feature    <866..1009
                     /gene="TLR5"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    <902..>1660
                     /gene="TLR5"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    905..976
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    977..1054
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1055..1129
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1130..1207
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1208..1279
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1493..1555
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <1514..>2329
                     /gene="TLR5"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1556..1627
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1628..1699
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1700..1771
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1772..1858
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1859..1963
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1964..2038
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2039..2125
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2126..2197
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2198..2254
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2264..2329
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2276..>2518
                     /gene="TLR5"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2693..3139
                     /gene="TLR5"
                     /note="TIR domain; Region: TIR; pfam01582"
                     /db_xref="CDD:396246"
ORIGIN      
        1 gggcgccgct tctgcgactg ggaggaacgg gacttggcgc gcggcgccgg gagacttccc
       61 cggaggtggc ttcactatct tccctggaaa agggagacag ccaccctcaa gcagagccaa
      121 ggaaatccca gacagttact gagccgctca acaaaaggcc ttgaacctcc gtctctccgc
      181 cctcataaca ccaggtagag actccaagtg gtttccaaaa ggaatacatt tctggtgagg
      241 tgcagttgga taaatgtctg tctacttcag caagcaagaa atattagagg attccacatc
      301 aataactggg ctcttcattc ggtaactgga gggtcctcaa aagcctctgt ggatgcttcc
      361 ctaggggaaa caaaagccct ttctctcgat tctccaggaa aacactgacg accatcctcc
      421 catcatcgag gcgaggaggt ccccattgtc tcagaaacgg aagcctttaa acaatcaggg
      481 acccagtgcc tctagaatca gaacatacta gaagcccctt ctgttaggac tggagaagcc
      541 ctgtgtgatt ctaagtagct gagtgatttt taggaaggaa tgcctatgtc gcctgatggc
      601 agaactaaca gtgatcatgg gagaccacct tgaccttctc ttaagaatgg tgctcatggc
      661 cagtcccgcg cttggaattt cctcctgctt cttcgatggt tggagagcct tatatcgttc
      721 ctgcaacctc acccaagtcc ctcaggtccc caacaccacc aagagtctcc tgctcagctt
      781 caactacatc aggacagtca caaccgcatc cttccccttc ctggagcagc tgcagctgct
      841 ggagctcggg actcagttta cccccttgac cattgacaaa gaagccttcc aaaatctgcc
      901 caatctcaga atcttggacc tgggcaaaag tcagatagac ttcttgcacc cagatgcttt
      961 tcaggaactg ccccatctct ccgaacttcg actgttttac tgtggtcttt ccagtgctgt
     1021 attaaaagat ggttatttca gaaacttggg gtctttggct cgcttggacc tatccaaaaa
     1081 tcagattcag agtctttacc ttcatcattc attccgggaa ttgaattcct tgaagtccat
     1141 cgatctttcc ctcaaccaaa taaccattgt ttgtgagcac gacctcaaac ccctccaagg
     1201 aaaaacactc tcctttttaa gccttgctga taataagctg tacagcaggg tctcagtgga
     1261 ctgggggaag tgtctgaacc cattcagaaa catggtcctg gaaaccctag atgtttctgg
     1321 caatggctgg gcagtggaca tcacaagaaa cttcagcaat gccatcaatg gaagccagat
     1381 tttctctttg gttcttacct atcacgtgat gggttctggg tttggcttca ctaacatcaa
     1441 agaccctgac cagcacacct ttgtcggcct ggccagaagc tcagtgatac agctggacct
     1501 ttcacatggg tttatcttct ccctgaactt ccaactcttc gagacgctca aggagttgaa
     1561 ggttctgaat ctcgcctaca acaagataaa caatattgca cacaaagcat tttatggact
     1621 cgacaacctc caagttctca atatatcaca taaccttctg ggggaattgt ataattctaa
     1681 tttctatgga ctacctaagg taacctatat tgatctgcaa aagaatcaca tcgggatcat
     1741 tcaggacaaa acattcagat tcctggaaaa gttaaacacc ttggatctcc gggataatgc
     1801 ccttaaaact attgattttc ttccaagcat acctagtatc ttcttgagtg gcaataaact
     1861 ggctactttg ccaaacatcg cacttacagc taacttcatc accttatcag agaataggct
     1921 ggaaaatctg gataatctct acttccttct ccaggtaccc catctccaga ttctcatttt
     1981 aaatcaaaat cgcttttcct tttgtaacca agaccatgcc ccttcagaga accccagctt
     2041 agaagagctt ttccttgaag aaaatatgtt gcagcttgcc tgggaagccg ggttctgctg
     2101 gaatgttttt aaagggcttt cccatctccg agtcctatat ttgaataaaa actacctgaa
     2161 tttccttcca ccaggagtat ttcgtcatct gactggactg aggggactca gcctcaagga
     2221 caacaggctg accgttcttt ttcctggtga cttacctgct aatttagagg tcctggatat
     2281 atccagaaac cagctcctct ctcctgatcc tgatttattt gcatcgctga gtgccgtgga
     2341 cataactcat aacaagttca tctgtgagtg tgaacttagc acttttatca gttggctcaa
     2401 tcaaaccaac gtcacaatat ttggctctcc ggcagacata tactgcatgt acccgagctc
     2461 catggctggg gcttccctct actctctttc cacggaagac tgtgatgaag aggaagtttt
     2521 agagtcccta aagttttccc ttttcacctt cttcactgtc actttgactc tgttcctcgt
     2581 ggccatcctc atcgttacga agtttcgggg gttttgtttc atctgttata agaaaaccca
     2641 gagactggtg ttcaagggcc ccatcaaggg aagagaatca gagacgtaca aatacgatgc
     2701 ctatttgtgc ttcagtagca aagactttga atgggtgcag aatgctttgc tcaaacacct
     2761 ggatgcccag tacagcgatc gaaacagatt taacctgtgc tttgaagaga gagacttttt
     2821 gcctggggaa aaccacatcg ccaacatcca ggatgccctg tggagcagca gaaaggttgt
     2881 ctgtctcgtg agcagacact tccttagaga cgggtggtgc ctcgaagcct tcagttacgc
     2941 ccagagcagg tgcttagctg acctcagtgg cgccctcatc atggtggtgg tggggtccct
     3001 gtcccagtac cagctgatga aacatcgctc catccgagga ttcgtccaga aacagcagta
     3061 cttgaggtgg cctgaggatc tccaggatgt tggctggttt ctcaacaaac tctctcagct
     3121 cattctaaat aaagaaaagg aaaggaagaa agacaatgac attcagttgc aaagtgtacc
     3181 caccatttct tagtcaaagg agcacttttc cacttatctc aagccacaag caactcttcc
     3241 ctttttattt ccactaagtt accatttggg gtcctttatg aagttgttgt tttcctacga
     3301 tgagaaccac ataaatctct tgattttcat a
//
LOCUS       XM_032649931            3257 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X6, mRNA.
ACCESSION   XM_032649931
VERSION     XM_032649931.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3257
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762648"
     CDS             543..3119
                     /gene="TLR5"
                     /codon_start=1
                     /product="toll-like receptor 5 isoform X2"
                     /protein_id="XP_032505822.1"
                     /db_xref="GeneID:116762648"
                     /translation="MGDHLDLLLRMVLMASPALGISSCFFDGWRALYRSCNLTQVPQV
                     PNTTKSLLLSFNYIRTVTTASFPFLEQLQLLELGTQFTPLTIDKEAFQNLPNLRILDL
                     GKSQIDFLHPDAFQELPHLSELRLFYCGLSSAVLKDGYFRNLGSLARLDLSKNQIQSL
                     YLHHSFRELNSLKSIDLSLNQITIVCEHDLKPLQGKTLSFLSLADNKLYSRVSVDWGK
                     CLNPFRNMVLETLDVSGNGWAVDITRNFSNAINGSQIFSLVLTYHVMGSGFGFTNIKD
                     PDQHTFVGLARSSVIQLDLSHGFIFSLNFQLFETLKELKVLNLAYNKINNIAHKAFYG
                     LDNLQVLNISHNLLGELYNSNFYGLPKVTYIDLQKNHIGIIQDKTFRFLEKLNTLDLR
                     DNALKTIDFLPSIPSIFLSGNKLATLPNIALTANFITLSENRLENLDNLYFLLQVPHL
                     QILILNQNRFSFCNQDHAPSENPSLEELFLEENMLQLAWEAGFCWNVFKGLSHLRVLY
                     LNKNYLNFLPPGVFRHLTGLRGLSLKDNRLTVLFPGDLPANLEVLDISRNQLLSPDPD
                     LFASLSAVDITHNKFICECELSTFISWLNQTNVTIFGSPADIYCMYPSSMAGASLYSL
                     STEDCDEEEVLESLKFSLFTFFTVTLTLFLVAILIVTKFRGFCFICYKKTQRLVFKGP
                     IKGRESETYKYDAYLCFSSKDFEWVQNALLKHLDAQYSDRNRFNLCFEERDFLPGENH
                     IANIQDALWSSRKVVCLVSRHFLRDGWCLEAFSYAQSRCLADLSGALIMVVVGSLSQY
                     QLMKHRSIRGFVQKQQYLRWPEDLQDVGWFLNKLSQLILNKEKERKKDNDIQLQSVPT
                     IS"
     misc_feature    <792..935
                     /gene="TLR5"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    <828..>1586
                     /gene="TLR5"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    831..902
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    903..980
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    981..1055
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1056..1133
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1134..1205
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1419..1481
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <1440..>2255
                     /gene="TLR5"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1482..1553
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1554..1625
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1626..1697
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1698..1784
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1785..1889
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1890..1964
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1965..2051
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2052..2123
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2124..2180
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2190..2255
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2202..>2444
                     /gene="TLR5"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2619..3065
                     /gene="TLR5"
                     /note="TIR domain; Region: TIR; pfam01582"
                     /db_xref="CDD:396246"
ORIGIN      
        1 cgccgcttct gcgactggga ggaacgggac ttggcgcgcg gcgccgggag acttccccgg
       61 aggggcaggt ggcttcacta tcttccctgg aaaagggaga cagccaccct caagcagagc
      121 caaggaaatc ccagacagtt actgagccgc tcaacaaaag gccttgaacc tccgtctctc
      181 cgccctcata acaccaggta gagactccaa gtggtttcca aaaggaatac atttctggtg
      241 aggtgcagtt ggataaatgt ctgtctactt cagcaagcaa gaaatattag aggattccac
      301 atcaataact gggctcttca ttcggtaact ggagggtcct caaaagcctc tgtggatgct
      361 tccctagggg aaacaaaagc cctttctctc gattctccag gaaaacactg acgaccatcc
      421 tcccatcatc gaggcgagga ggtccccatt gtctcagaaa cggaagcctt taaacaatca
      481 gggacccagt gcctctagaa tcagaacata ctagaagccc cttctgttag gactggagga
      541 tcatgggaga ccaccttgac cttctcttaa gaatggtgct catggccagt cccgcgcttg
      601 gaatttcctc ctgcttcttc gatggttgga gagccttata tcgttcctgc aacctcaccc
      661 aagtccctca ggtccccaac accaccaaga gtctcctgct cagcttcaac tacatcagga
      721 cagtcacaac cgcatccttc cccttcctgg agcagctgca gctgctggag ctcgggactc
      781 agtttacccc cttgaccatt gacaaagaag ccttccaaaa tctgcccaat ctcagaatct
      841 tggacctggg caaaagtcag atagacttct tgcacccaga tgcttttcag gaactgcccc
      901 atctctccga acttcgactg ttttactgtg gtctttccag tgctgtatta aaagatggtt
      961 atttcagaaa cttggggtct ttggctcgct tggacctatc caaaaatcag attcagagtc
     1021 tttaccttca tcattcattc cgggaattga attccttgaa gtccatcgat ctttccctca
     1081 accaaataac cattgtttgt gagcacgacc tcaaacccct ccaaggaaaa acactctcct
     1141 ttttaagcct tgctgataat aagctgtaca gcagggtctc agtggactgg gggaagtgtc
     1201 tgaacccatt cagaaacatg gtcctggaaa ccctagatgt ttctggcaat ggctgggcag
     1261 tggacatcac aagaaacttc agcaatgcca tcaatggaag ccagattttc tctttggttc
     1321 ttacctatca cgtgatgggt tctgggtttg gcttcactaa catcaaagac cctgaccagc
     1381 acacctttgt cggcctggcc agaagctcag tgatacagct ggacctttca catgggttta
     1441 tcttctccct gaacttccaa ctcttcgaga cgctcaagga gttgaaggtt ctgaatctcg
     1501 cctacaacaa gataaacaat attgcacaca aagcatttta tggactcgac aacctccaag
     1561 ttctcaatat atcacataac cttctggggg aattgtataa ttctaatttc tatggactac
     1621 ctaaggtaac ctatattgat ctgcaaaaga atcacatcgg gatcattcag gacaaaacat
     1681 tcagattcct ggaaaagtta aacaccttgg atctccggga taatgccctt aaaactattg
     1741 attttcttcc aagcatacct agtatcttct tgagtggcaa taaactggct actttgccaa
     1801 acatcgcact tacagctaac ttcatcacct tatcagagaa taggctggaa aatctggata
     1861 atctctactt ccttctccag gtaccccatc tccagattct cattttaaat caaaatcgct
     1921 tttccttttg taaccaagac catgcccctt cagagaaccc cagcttagaa gagcttttcc
     1981 ttgaagaaaa tatgttgcag cttgcctggg aagccgggtt ctgctggaat gtttttaaag
     2041 ggctttccca tctccgagtc ctatatttga ataaaaacta cctgaatttc cttccaccag
     2101 gagtatttcg tcatctgact ggactgaggg gactcagcct caaggacaac aggctgaccg
     2161 ttctttttcc tggtgactta cctgctaatt tagaggtcct ggatatatcc agaaaccagc
     2221 tcctctctcc tgatcctgat ttatttgcat cgctgagtgc cgtggacata actcataaca
     2281 agttcatctg tgagtgtgaa cttagcactt ttatcagttg gctcaatcaa accaacgtca
     2341 caatatttgg ctctccggca gacatatact gcatgtaccc gagctccatg gctggggctt
     2401 ccctctactc tctttccacg gaagactgtg atgaagagga agttttagag tccctaaagt
     2461 tttccctttt caccttcttc actgtcactt tgactctgtt cctcgtggcc atcctcatcg
     2521 ttacgaagtt tcgggggttt tgtttcatct gttataagaa aacccagaga ctggtgttca
     2581 agggccccat caagggaaga gaatcagaga cgtacaaata cgatgcctat ttgtgcttca
     2641 gtagcaaaga ctttgaatgg gtgcagaatg ctttgctcaa acacctggat gcccagtaca
     2701 gcgatcgaaa cagatttaac ctgtgctttg aagagagaga ctttttgcct ggggaaaacc
     2761 acatcgccaa catccaggat gccctgtgga gcagcagaaa ggttgtctgt ctcgtgagca
     2821 gacacttcct tagagacggg tggtgcctcg aagccttcag ttacgcccag agcaggtgct
     2881 tagctgacct cagtggcgcc ctcatcatgg tggtggtggg gtccctgtcc cagtaccagc
     2941 tgatgaaaca tcgctccatc cgaggattcg tccagaaaca gcagtacttg aggtggcctg
     3001 aggatctcca ggatgttggc tggtttctca acaaactctc tcagctcatt ctaaataaag
     3061 aaaaggaaag gaagaaagac aatgacattc agttgcaaag tgtacccacc atttcttagt
     3121 caaaggagca cttttccact tatctcaagc cacaagcaac tcttcccttt ttatttccac
     3181 taagttacca tttggggtcc tttatgaagt tgttgttttc ctacgatgag aaccacataa
     3241 atctcttgat tttcata
//
LOCUS       XM_032649940            2930 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X7, mRNA.
ACCESSION   XM_032649940
VERSION     XM_032649940.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2930
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762648"
     CDS             216..2792
                     /gene="TLR5"
                     /codon_start=1
                     /product="toll-like receptor 5 isoform X2"
                     /protein_id="XP_032505831.1"
                     /db_xref="GeneID:116762648"
                     /translation="MGDHLDLLLRMVLMASPALGISSCFFDGWRALYRSCNLTQVPQV
                     PNTTKSLLLSFNYIRTVTTASFPFLEQLQLLELGTQFTPLTIDKEAFQNLPNLRILDL
                     GKSQIDFLHPDAFQELPHLSELRLFYCGLSSAVLKDGYFRNLGSLARLDLSKNQIQSL
                     YLHHSFRELNSLKSIDLSLNQITIVCEHDLKPLQGKTLSFLSLADNKLYSRVSVDWGK
                     CLNPFRNMVLETLDVSGNGWAVDITRNFSNAINGSQIFSLVLTYHVMGSGFGFTNIKD
                     PDQHTFVGLARSSVIQLDLSHGFIFSLNFQLFETLKELKVLNLAYNKINNIAHKAFYG
                     LDNLQVLNISHNLLGELYNSNFYGLPKVTYIDLQKNHIGIIQDKTFRFLEKLNTLDLR
                     DNALKTIDFLPSIPSIFLSGNKLATLPNIALTANFITLSENRLENLDNLYFLLQVPHL
                     QILILNQNRFSFCNQDHAPSENPSLEELFLEENMLQLAWEAGFCWNVFKGLSHLRVLY
                     LNKNYLNFLPPGVFRHLTGLRGLSLKDNRLTVLFPGDLPANLEVLDISRNQLLSPDPD
                     LFASLSAVDITHNKFICECELSTFISWLNQTNVTIFGSPADIYCMYPSSMAGASLYSL
                     STEDCDEEEVLESLKFSLFTFFTVTLTLFLVAILIVTKFRGFCFICYKKTQRLVFKGP
                     IKGRESETYKYDAYLCFSSKDFEWVQNALLKHLDAQYSDRNRFNLCFEERDFLPGENH
                     IANIQDALWSSRKVVCLVSRHFLRDGWCLEAFSYAQSRCLADLSGALIMVVVGSLSQY
                     QLMKHRSIRGFVQKQQYLRWPEDLQDVGWFLNKLSQLILNKEKERKKDNDIQLQSVPT
                     IS"
     misc_feature    <465..608
                     /gene="TLR5"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    <501..>1259
                     /gene="TLR5"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    504..575
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    576..653
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    654..728
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    729..806
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    807..878
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1092..1154
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <1113..>1928
                     /gene="TLR5"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1155..1226
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1227..1298
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1299..1370
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1371..1457
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1458..1562
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1563..1637
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1638..1724
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1725..1796
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1797..1853
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1863..1928
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1875..>2117
                     /gene="TLR5"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2292..2738
                     /gene="TLR5"
                     /note="TIR domain; Region: TIR; pfam01582"
                     /db_xref="CDD:396246"
ORIGIN      
        1 cgccgcttct gcgactggga ggaacgggac ttggcgcgcg gcgccgggag acttccccgg
       61 aggggcaggt ggcttcacta tcttccctgg aaaagggaga cagccaccct caagcagagc
      121 caaggaaatc ccagacagtt actgagccgc tcaacaaaag gccttgaacc tccgtctctc
      181 cgccctcata acaccaggta gagactccaa ggatcatggg agaccacctt gaccttctct
      241 taagaatggt gctcatggcc agtcccgcgc ttggaatttc ctcctgcttc ttcgatggtt
      301 ggagagcctt atatcgttcc tgcaacctca cccaagtccc tcaggtcccc aacaccacca
      361 agagtctcct gctcagcttc aactacatca ggacagtcac aaccgcatcc ttccccttcc
      421 tggagcagct gcagctgctg gagctcggga ctcagtttac ccccttgacc attgacaaag
      481 aagccttcca aaatctgccc aatctcagaa tcttggacct gggcaaaagt cagatagact
      541 tcttgcaccc agatgctttt caggaactgc cccatctctc cgaacttcga ctgttttact
      601 gtggtctttc cagtgctgta ttaaaagatg gttatttcag aaacttgggg tctttggctc
      661 gcttggacct atccaaaaat cagattcaga gtctttacct tcatcattca ttccgggaat
      721 tgaattcctt gaagtccatc gatctttccc tcaaccaaat aaccattgtt tgtgagcacg
      781 acctcaaacc cctccaagga aaaacactct cctttttaag ccttgctgat aataagctgt
      841 acagcagggt ctcagtggac tgggggaagt gtctgaaccc attcagaaac atggtcctgg
      901 aaaccctaga tgtttctggc aatggctggg cagtggacat cacaagaaac ttcagcaatg
      961 ccatcaatgg aagccagatt ttctctttgg ttcttaccta tcacgtgatg ggttctgggt
     1021 ttggcttcac taacatcaaa gaccctgacc agcacacctt tgtcggcctg gccagaagct
     1081 cagtgataca gctggacctt tcacatgggt ttatcttctc cctgaacttc caactcttcg
     1141 agacgctcaa ggagttgaag gttctgaatc tcgcctacaa caagataaac aatattgcac
     1201 acaaagcatt ttatggactc gacaacctcc aagttctcaa tatatcacat aaccttctgg
     1261 gggaattgta taattctaat ttctatggac tacctaaggt aacctatatt gatctgcaaa
     1321 agaatcacat cgggatcatt caggacaaaa cattcagatt cctggaaaag ttaaacacct
     1381 tggatctccg ggataatgcc cttaaaacta ttgattttct tccaagcata cctagtatct
     1441 tcttgagtgg caataaactg gctactttgc caaacatcgc acttacagct aacttcatca
     1501 ccttatcaga gaataggctg gaaaatctgg ataatctcta cttccttctc caggtacccc
     1561 atctccagat tctcatttta aatcaaaatc gcttttcctt ttgtaaccaa gaccatgccc
     1621 cttcagagaa ccccagctta gaagagcttt tccttgaaga aaatatgttg cagcttgcct
     1681 gggaagccgg gttctgctgg aatgttttta aagggctttc ccatctccga gtcctatatt
     1741 tgaataaaaa ctacctgaat ttccttccac caggagtatt tcgtcatctg actggactga
     1801 ggggactcag cctcaaggac aacaggctga ccgttctttt tcctggtgac ttacctgcta
     1861 atttagaggt cctggatata tccagaaacc agctcctctc tcctgatcct gatttatttg
     1921 catcgctgag tgccgtggac ataactcata acaagttcat ctgtgagtgt gaacttagca
     1981 cttttatcag ttggctcaat caaaccaacg tcacaatatt tggctctccg gcagacatat
     2041 actgcatgta cccgagctcc atggctgggg cttccctcta ctctctttcc acggaagact
     2101 gtgatgaaga ggaagtttta gagtccctaa agttttccct tttcaccttc ttcactgtca
     2161 ctttgactct gttcctcgtg gccatcctca tcgttacgaa gtttcggggg ttttgtttca
     2221 tctgttataa gaaaacccag agactggtgt tcaagggccc catcaaggga agagaatcag
     2281 agacgtacaa atacgatgcc tatttgtgct tcagtagcaa agactttgaa tgggtgcaga
     2341 atgctttgct caaacacctg gatgcccagt acagcgatcg aaacagattt aacctgtgct
     2401 ttgaagagag agactttttg cctggggaaa accacatcgc caacatccag gatgccctgt
     2461 ggagcagcag aaaggttgtc tgtctcgtga gcagacactt ccttagagac gggtggtgcc
     2521 tcgaagcctt cagttacgcc cagagcaggt gcttagctga cctcagtggc gccctcatca
     2581 tggtggtggt ggggtccctg tcccagtacc agctgatgaa acatcgctcc atccgaggat
     2641 tcgtccagaa acagcagtac ttgaggtggc ctgaggatct ccaggatgtt ggctggtttc
     2701 tcaacaaact ctctcagctc attctaaata aagaaaagga aaggaagaaa gacaatgaca
     2761 ttcagttgca aagtgtaccc accatttctt agtcaaagga gcacttttcc acttatctca
     2821 agccacaagc aactcttccc tttttatttc cactaagtta ccatttgggg tcctttatga
     2881 agttgttgtt ttcctacgat gagaaccaca taaatctctt gattttcata
//
LOCUS       XM_032649949            2755 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X8, mRNA.
ACCESSION   XM_032649949
VERSION     XM_032649949.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2755
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2755
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762648"
     CDS             41..2617
                     /gene="TLR5"
                     /codon_start=1
                     /product="toll-like receptor 5 isoform X2"
                     /protein_id="XP_032505840.1"
                     /db_xref="GeneID:116762648"
                     /translation="MGDHLDLLLRMVLMASPALGISSCFFDGWRALYRSCNLTQVPQV
                     PNTTKSLLLSFNYIRTVTTASFPFLEQLQLLELGTQFTPLTIDKEAFQNLPNLRILDL
                     GKSQIDFLHPDAFQELPHLSELRLFYCGLSSAVLKDGYFRNLGSLARLDLSKNQIQSL
                     YLHHSFRELNSLKSIDLSLNQITIVCEHDLKPLQGKTLSFLSLADNKLYSRVSVDWGK
                     CLNPFRNMVLETLDVSGNGWAVDITRNFSNAINGSQIFSLVLTYHVMGSGFGFTNIKD
                     PDQHTFVGLARSSVIQLDLSHGFIFSLNFQLFETLKELKVLNLAYNKINNIAHKAFYG
                     LDNLQVLNISHNLLGELYNSNFYGLPKVTYIDLQKNHIGIIQDKTFRFLEKLNTLDLR
                     DNALKTIDFLPSIPSIFLSGNKLATLPNIALTANFITLSENRLENLDNLYFLLQVPHL
                     QILILNQNRFSFCNQDHAPSENPSLEELFLEENMLQLAWEAGFCWNVFKGLSHLRVLY
                     LNKNYLNFLPPGVFRHLTGLRGLSLKDNRLTVLFPGDLPANLEVLDISRNQLLSPDPD
                     LFASLSAVDITHNKFICECELSTFISWLNQTNVTIFGSPADIYCMYPSSMAGASLYSL
                     STEDCDEEEVLESLKFSLFTFFTVTLTLFLVAILIVTKFRGFCFICYKKTQRLVFKGP
                     IKGRESETYKYDAYLCFSSKDFEWVQNALLKHLDAQYSDRNRFNLCFEERDFLPGENH
                     IANIQDALWSSRKVVCLVSRHFLRDGWCLEAFSYAQSRCLADLSGALIMVVVGSLSQY
                     QLMKHRSIRGFVQKQQYLRWPEDLQDVGWFLNKLSQLILNKEKERKKDNDIQLQSVPT
                     IS"
     misc_feature    <290..433
                     /gene="TLR5"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    <326..>1084
                     /gene="TLR5"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    329..400
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    401..478
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    479..553
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    554..631
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    632..703
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    917..979
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <938..>1753
                     /gene="TLR5"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    980..1051
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1052..1123
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1124..1195
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1196..1282
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1283..1387
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1388..1462
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1463..1549
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1550..1621
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1622..1678
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1688..1753
                     /gene="TLR5"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1700..>1942
                     /gene="TLR5"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2117..2563
                     /gene="TLR5"
                     /note="TIR domain; Region: TIR; pfam01582"
                     /db_xref="CDD:396246"
ORIGIN      
        1 ggacttggcg cgcggcgccg ggagacttcc ccggaggatc atgggagacc accttgacct
       61 tctcttaaga atggtgctca tggccagtcc cgcgcttgga atttcctcct gcttcttcga
      121 tggttggaga gccttatatc gttcctgcaa cctcacccaa gtccctcagg tccccaacac
      181 caccaagagt ctcctgctca gcttcaacta catcaggaca gtcacaaccg catccttccc
      241 cttcctggag cagctgcagc tgctggagct cgggactcag tttaccccct tgaccattga
      301 caaagaagcc ttccaaaatc tgcccaatct cagaatcttg gacctgggca aaagtcagat
      361 agacttcttg cacccagatg cttttcagga actgccccat ctctccgaac ttcgactgtt
      421 ttactgtggt ctttccagtg ctgtattaaa agatggttat ttcagaaact tggggtcttt
      481 ggctcgcttg gacctatcca aaaatcagat tcagagtctt taccttcatc attcattccg
      541 ggaattgaat tccttgaagt ccatcgatct ttccctcaac caaataacca ttgtttgtga
      601 gcacgacctc aaacccctcc aaggaaaaac actctccttt ttaagccttg ctgataataa
      661 gctgtacagc agggtctcag tggactgggg gaagtgtctg aacccattca gaaacatggt
      721 cctggaaacc ctagatgttt ctggcaatgg ctgggcagtg gacatcacaa gaaacttcag
      781 caatgccatc aatggaagcc agattttctc tttggttctt acctatcacg tgatgggttc
      841 tgggtttggc ttcactaaca tcaaagaccc tgaccagcac acctttgtcg gcctggccag
      901 aagctcagtg atacagctgg acctttcaca tgggtttatc ttctccctga acttccaact
      961 cttcgagacg ctcaaggagt tgaaggttct gaatctcgcc tacaacaaga taaacaatat
     1021 tgcacacaaa gcattttatg gactcgacaa cctccaagtt ctcaatatat cacataacct
     1081 tctgggggaa ttgtataatt ctaatttcta tggactacct aaggtaacct atattgatct
     1141 gcaaaagaat cacatcggga tcattcagga caaaacattc agattcctgg aaaagttaaa
     1201 caccttggat ctccgggata atgcccttaa aactattgat tttcttccaa gcatacctag
     1261 tatcttcttg agtggcaata aactggctac tttgccaaac atcgcactta cagctaactt
     1321 catcacctta tcagagaata ggctggaaaa tctggataat ctctacttcc ttctccaggt
     1381 accccatctc cagattctca ttttaaatca aaatcgcttt tccttttgta accaagacca
     1441 tgccccttca gagaacccca gcttagaaga gcttttcctt gaagaaaata tgttgcagct
     1501 tgcctgggaa gccgggttct gctggaatgt ttttaaaggg ctttcccatc tccgagtcct
     1561 atatttgaat aaaaactacc tgaatttcct tccaccagga gtatttcgtc atctgactgg
     1621 actgagggga ctcagcctca aggacaacag gctgaccgtt ctttttcctg gtgacttacc
     1681 tgctaattta gaggtcctgg atatatccag aaaccagctc ctctctcctg atcctgattt
     1741 atttgcatcg ctgagtgccg tggacataac tcataacaag ttcatctgtg agtgtgaact
     1801 tagcactttt atcagttggc tcaatcaaac caacgtcaca atatttggct ctccggcaga
     1861 catatactgc atgtacccga gctccatggc tggggcttcc ctctactctc tttccacgga
     1921 agactgtgat gaagaggaag ttttagagtc cctaaagttt tcccttttca ccttcttcac
     1981 tgtcactttg actctgttcc tcgtggccat cctcatcgtt acgaagtttc gggggttttg
     2041 tttcatctgt tataagaaaa cccagagact ggtgttcaag ggccccatca agggaagaga
     2101 atcagagacg tacaaatacg atgcctattt gtgcttcagt agcaaagact ttgaatgggt
     2161 gcagaatgct ttgctcaaac acctggatgc ccagtacagc gatcgaaaca gatttaacct
     2221 gtgctttgaa gagagagact ttttgcctgg ggaaaaccac atcgccaaca tccaggatgc
     2281 cctgtggagc agcagaaagg ttgtctgtct cgtgagcaga cacttcctta gagacgggtg
     2341 gtgcctcgaa gccttcagtt acgcccagag caggtgctta gctgacctca gtggcgccct
     2401 catcatggtg gtggtggggt ccctgtccca gtaccagctg atgaaacatc gctccatccg
     2461 aggattcgtc cagaaacagc agtacttgag gtggcctgag gatctccagg atgttggctg
     2521 gtttctcaac aaactctctc agctcattct aaataaagaa aaggaaagga agaaagacaa
     2581 tgacattcag ttgcaaagtg tacccaccat ttcttagtca aaggagcact tttccactta
     2641 tctcaagcca caagcaactc ttcccttttt atttccacta agttaccatt tggggtcctt
     2701 tatgaagttg ttgttttcct acgatgagaa ccacataaat ctcttgattt tcata
//
LOCUS       XR_004352316            1662 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 5 (TLR5), transcript
            variant X9, misc_RNA.
ACCESSION   XR_004352316
VERSION     XR_004352316.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1662
                     /gene="TLR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116762648"
     misc_RNA        1..1662
                     /gene="TLR5"
                     /product="toll like receptor 5, transcript variant X9"
                     /db_xref="GeneID:116762648"
ORIGIN      
        1 cgccgcttct gcgactggga ggaacgggac ttggcgcgcg gcgccgggag acttccccgg
       61 aggggcaggt ggcttcacta tcttccctgg aaaagggaga cagccaccct caagcagagc
      121 caaggaaatc ccagacagtt actgagccgc tcaacaaaag gccttgaacc tccgtctctc
      181 cgccctcata acaccaggta gagactccaa gtggtttcca aaaggaatac atttctggtg
      241 aggtgcagtt ggataaatgt ctgtctactt cagcaagcaa gaaatattag aggattccac
      301 atcaataact gggctcttca ttcggtaact ggagggtcct caaaagcctc tgtggatgct
      361 tccctagggg aaacaaaagc cctttctctc gattctccag gaaaacactg acgaccatcc
      421 tcccatcatc gaggcgagga ggtccccatt gtctcagaaa cggaagcctt taaacaatca
      481 gggacccagt gcctctagaa tcagaacata ctagaagccc cttctgttag gactggagag
      541 gttgcatgca gctgcatcca ggttctccag agccacagct ctctagaacc cagggttcac
      601 tctggatatc ttcacggatg tttcagctcc ggccacgttt aggggaagaa ctaacaaaga
      661 aggaaaccga ggcaccttag gaagaagcgt gtgccccttg ctcccacagg cgatttgcca
      721 aatccaagag cacatctgga gagctgggtg atgccccatt gattcaagtt aacgtcgtct
      781 cccgtctgat cacatgttgg tcccaagaac aatgaatagg agcccagcgt acactggtgt
      841 gacaagagga ctcaccgaag tcatcctccc agagtgaggg acaaatcagc gcagaggttc
      901 agcctgcttc tccttttaga gccaaataaa gacaatttgg attcctttta gaacaattct
      961 ttgcctctgc ttgcgtgggc ccagaagcat tgaggctcag tttcagagcg cccagctact
     1021 tgctaaagaa aatctgttaa cgatcaggaa agatcgtcct tgaaattgtc atttgccaga
     1081 caggaagctc cagtcgcaaa ctgctgtgaa aaattgactt ctggggaatg aagtctgggt
     1141 agccccggtt ggcaagccaa gaagtcctgg tttctgatct tttgggcacc acacaatttg
     1201 gtttttggag attacccctc agtgcaggta gaccagtgaa ttgtctgtac cctgcacact
     1261 gcctggctct cactgagtaa ctgctggttc agtgtttgtc acctggtact gagggacacc
     1321 ccccccccct cagccacacc acctcatttc agaccaagga cactggtgtt gtaaatagga
     1381 ttgggataac cagtcttctg taacttaacc accaactcct cacaatttta ctgtctttct
     1441 tggggctaca cgtaggacca cctaagagac ttgccaacgc acacatctgg tcccagtctg
     1501 tccagactga ttttttgtga catcttgaga cctctcacca ccagtcacct tacaggttcc
     1561 catgctaaga atgccccctt ccctttttcc tacccagcct ctgcccatcc ttcacccacc
     1621 ttctcaacac aaccgttcct aatcactctc agaccaccat ga
//
LOCUS       XM_032649981            8692 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC component 1 (AGO1),
            transcript variant X1, mRNA.
ACCESSION   XM_032649981
VERSION     XM_032649981.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8692
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8692
                     /gene="AGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 6 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762682"
     CDS             212..2794
                     /gene="AGO1"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X1"
                     /protein_id="XP_032505872.1"
                     /db_xref="GeneID:116762682"
                     /translation="MEAGPSGAAAGTYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFE
                     VDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVT
                     ALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQAL
                     DVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVS
                     ATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRK
                     YRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKH
                     TYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYI
                     QEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIK
                     VWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRH
                     LKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCL
                     KINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPS
                     RYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILH
                     YELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTN
                     ITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSV
                     SIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRT
                     MYFA"
     misc_feature    311..703
                     /gene="AGO1"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    731..883
                     /gene="AGO1"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    884..1246
                     /gene="AGO1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1040..1042,1085..1087,1127..1129,1139..1141,
                     1193..1195,1214..1216,1220..1222)
                     /gene="AGO1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1379..2665
                     /gene="AGO1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1799..1801,1811..1813,1847..1858,1865..1867,
                     1889..1891,1898..1900,1910..1912,1922..1924)
                     /gene="AGO1"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2003..2005,2009..2011,2219..2221,2633..2635)
                     /gene="AGO1"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 cagctggccg ggcgctagct gggggagctg ctgcaggctc cgcggcggcg gctgcaacgg
       61 aggctgcggg ggcggcggcg cgagcggccg ggcttggggg ggtagccgag cccggcccgg
      121 gagcccaagc agctaaagtg cggggtacct aggcccttca cgctggactc cacagtctcc
      181 gggccgcctg acctccgcac gggtatatgg gatggaagcg ggaccctcgg gagcagctgc
      241 aggcacctac ctgccccccc tgcagcaggt gttccaggca cctcgccggc ctggcattgg
      301 caccgtgggg aaaccaatca agcttctggc caactacttt gaagtggaca tccctaagat
      361 tgacgtctac cactacgagg tggatatcaa gccggataag tgtcctcgca gagtcaaccg
      421 ggaagtggtg gaatacatgg tccagcattt caagcctcag atctttggtg atcgcaagcc
      481 cgtgtatgat ggaaagaaga acatttacac tgtcacagca ctgcccattg gcaatgaacg
      541 ggttgacttc gaggtgacaa tccctgggga agggaaggat cgaatcttca aggtctccat
      601 caagtggcta gccattgtga gctggcgcat gctgcatgag gccttggtta gtggccagat
      661 ccccgttccc ctggagtctg tgcaagccct ggatgtggcc atgaggcacc tggcatccat
      721 gaggtacacc cctgtgggcc gctccttctt ctcaccgcct gagggctact accacccgct
      781 ggggggtggg cgcgaggtct ggttcggctt tcaccagtct gtgcgccctg ccatgtggaa
      841 gatgatgctc aacattgatg tctcagccac tgccttctac aaggcgcagc cagtgattga
      901 gttcatgtgt gaggtgctgg acatcaggaa catagatgag cagcccaagc ccctcacgga
      961 ctctcagcgt gtgcgcttca ccaaggagat caagggcctg aaggtggaag tgacccactg
     1021 tggacagatg aagaggaaat accgcgtgtg taatgttacc cgccgccctg ccagccatca
     1081 gacgtttcct ttgcagctgg agagtggaca gactgtggag tgcacagtgg cacagtattt
     1141 caagcagaaa tataaccttc agctcaagta tccccacctg ccctgcctgc aagttggcca
     1201 ggaacaaaag catacctacc tgcccctaga ggtctgtaac attgtggctg ggcagcgctg
     1261 cattaagaag ctgactgaca accagacttc aaccatgata aaggctacag ctagatcggc
     1321 cccagacaga caagaggaga tcagccgcct gatgaagaat gccagctaca acctagatcc
     1381 ctacatccag gaatttggga tcaaggtgaa ggatgacatg acggaggtga cggggcgagt
     1441 gctgccggcg cccatcttgc agtacggcgg ccgggtgagc aggaaccggg ccattgcgac
     1501 acccaatcaa ggtgtctggg acatgcgggg gaaacagttc tacaatggaa ttgagatcaa
     1561 agtctgggcc attgcctgct tcgcacccca aaaacagtgt cgagaagaag tgctcaagaa
     1621 cttcacagac cagctgcgga agatttccaa ggatgcaggg atgcccatcc agggccagcc
     1681 ttgcttctgc aaatatgcgc agggggcaga cagcgtggag cccatgttcc ggcatctcaa
     1741 gaacacctac tcagggctgc agctcattat cgtcatcctg ccagggaaga cgccagtgta
     1801 tgctgaagtg aaacgtgttg gagatacact cttgggaatg gctacacagt gtgtgcaagt
     1861 gaagaatgtg gtcaagacct cgcctcagac tctgtccaac ctttgcctga agatcaatgt
     1921 caaacttggt ggcattaaca acatcctagt tccacaccaa cgctctgctg tctttcaaca
     1981 accagtgata ttcctgggag cagatgttac acacccccca gcaggggatg ggaaaaaacc
     2041 ttctatcaca gcagtggtag gcagtatgga tgcccacccc agccgttact gtgctactgt
     2101 gcgggtgcag cgacctcggc aggagatcat tgaagacttg tcctacatgg tacgtgagct
     2161 gctcatccag ttctacaagt ccacccgctt caagcctacc cgcatcatct tctaccgaga
     2221 tggggttcct gaaggccagc tcccccagat cctccactat gagctgctgg ccattcgtga
     2281 tgcctgcatc aaactggaaa aggactacca gcccgggatc acttatattg tggtgcagaa
     2341 acgccatcac acccgccttt tttgtgctga caagaatgag cgaattggga agagtggtaa
     2401 catcccagct gggaccactg tggacaccaa catcacccac ccatttgagt ttgacttcta
     2461 tctgtgcagc cacgcaggca tccagggcac cagccgacca tcccattact atgtcctttg
     2521 ggatgacaac cgtttcacag cggatgagct ccagatcttg acgtaccagc tgtgccacac
     2581 ttatgtacga tgcacacgct ccgtctcaat tccagcacct gcctactatg cccgcttggt
     2641 ggctttccgg gcacgatacc acctagtgga caaggagcat gacagtggag aggggagcca
     2701 catatcgggg cagagcaatg ggcgggaccc ccaggccctg gccaaagccg tgcaggttca
     2761 ccaggatact ctgcgcacca tgtacttcgc ttgaaggcag aacgctgtta cctcactgga
     2821 tagaagaaag ctttccaagc cccaagagct gtgccgccca aatccagagg aagcagggag
     2881 ggaggtgggg cagggaggaa tgcagaaggc cttgtttcct ctacagaggg ggcgaaaggg
     2941 tggggaacag ggccagtaag ccagaccacc agccagaaat ctctgatatt cacctcatgc
     3001 cctccacccc tcaccccatc ttgtcacatc tggccctgac tccactggac caagagaggc
     3061 agccccggtg cccaccatac acacagatgt cgcatgtgac tcacagtgct aaagactcat
     3121 gcctgacagc ttggtaaggt cggccctgca gccctgcagt caaaagctgg taggtttggg
     3181 tttgatactt tagatgggaa agtgaggggc ttgaaaagtg ggtgggagga gggaaggatt
     3241 ttttaggagc cttaatcaga aaaggtctag atttgtttaa gaagaaaaac gaaaccagat
     3301 gcagatcaat attttaggat actagatgtt ttaatgggtt gagaatccag cttgtaggaa
     3361 gatttttaat gctaatggtt tggttgcccc tcccccagct gccactcctc tttcccttat
     3421 tcctctttct ccaccttttc taccccacct tacaccttct ccctgacaga catccagccc
     3481 ctagtaagac ttaaggcact atggcactta gctctgaagt gacacgaccc tgtcttcctt
     3541 ccgcctgctg gtgggtaacc agtgccttcc ctgtaacggt aatgctgcag aactgcaacc
     3601 ttttgtacct atttttgggg gggtgggggc ggggtggggg tgggagagga ggtaggtggg
     3661 gatgaaatac ccctaaccca acaagcctcc agccagagcg ccagctattt tgcatttgaa
     3721 ggagttgact tccatattca ttgagctttt aaaaagatcg ccacctcaag atggttaaaa
     3781 tccattgaca tttgcacttt cagacatgac aagtctctcg gagctgctga ggtgactggc
     3841 ctctggcctt tccacttacg tctcctttct tcccgtcccc gcttcctccc cacctgcctg
     3901 ggtctggagt tactttcata gcatttctca ctcttggctt cttttttttt ccctgatggt
     3961 caagtctgtt tatgtttcaa tattttttaa ctggggtgtc ttttaacaaa cgatccttag
     4021 gtctaaaata agaaaaaaaa aaaaagcaaa aactaaatgt tatttttata ccataacttg
     4081 agtctattgc caaaatctgg aaaccctccc atgcccaatg agtttacatc ccagaaacat
     4141 tgagccgtca gaaggaacta tgtacctgac ttgttctttg gcctggctct gtagggggtg
     4201 gttatctccc caaggtgggg ctcagtctcc acctttcctc tgtgcagata atatctttct
     4261 cttgctgcag gcaccccttc tgcactgccc tgcactcttt tctgcaagtg catcttccct
     4321 tcctctggac tgtcctctga cactttggct tatcccagat ttcagtgtgt cctgtggata
     4381 ggctggggaa ttttgctgct cccttttgct tctgtttaca caaatgaatt tttcctgatt
     4441 tcccactagg gcatgtgagt gggtggcata ggctttttaa aaaatttttt cctgtcttcc
     4501 tgggtagaga tggggtttgg ctgtgttgca gaactggaaa agtagggggt tctagcttgg
     4561 ggcctgttgg ccttgaagca aggcttcctc atttcttgac tgttcatttt ttcctgtccc
     4621 actgcttggg atgaggagtt gcagcttcag tgtggaaatt cctctttttg aggagcctgg
     4681 gcttgggctt gccccaatct ggtgatgaag ccatgacact ttagacctag ctcaggcttg
     4741 gaggccagcc agaggaaggc cggtctgaat atgggcgtat gaagttagag ctaccatttc
     4801 ccctccccag cagcctttgt acagacccag atttgctatg caaaacagtc tatcccaggt
     4861 tctgttctgg ttggctactt tgttcagcaa cttcacaaaa cgtagcacaa acattgatta
     4921 tggagaaggc atcaggactg ttgagtaact cttcctttac ttctttcctg ctggctacag
     4981 tgtggggtgc cccatgggca cagcccagct gaagaacaga atggagggct ctgggaggag
     5041 gcagctcact ggagagccta cattccttac acaagtgcct aaagagagtg atgccaacac
     5101 tccatctgcc ctgtccatcg ccttcatata ctgtctattt tgtgttcagt caccctttgg
     5161 ggaggagagt tctcttggga cagtgggctc tgagtgttct cttcttgggt atgttttggg
     5221 gctgggatca gggcagtatt cctggagggt ccagtcattc accagcattt tgcaaatgtc
     5281 catttgagag ctggtggcag ccacctactc tccacagcaa gtttgtgttc tccccttttt
     5341 ctctctttgc ctcactctct ccagttgggt tttgagctga ggcttgaaat gcatttttta
     5401 gccctttggc attgtacatg ccatttaaga aataaaagca aaagaaacag cttgggcagt
     5461 ggcaagaata tgacatcttg ctgtgatttt ctctatttcg ttttatcttt gaaacttgaa
     5521 aaacaccctt gaccttgagg attactcttg tttgaaaggt ggtgcatgca gattgagaag
     5581 tggtgttggc aacaagcttt ggctttcttt gattttgttc aagtggtgct tcttacttag
     5641 gctctgaaga agctctgggg agaccccagc ctcatcctct tagagaagtc tcctgctccc
     5701 tttgttccac tcttttacct tccttttcct cttctctctt tccctggcct ccttttattt
     5761 tattttctgt tcagtcagct tgcttgctgg cctccctgcc tgtctgcctt tgtgatgatg
     5821 aattctctgc atggctaaaa tgatcgcact gttcgctggc aaggtcaggc ttagctcctc
     5881 ggctgcagaa gaccaagaat cttcttccca agcccagtga tgtcctcact gggctggact
     5941 gcccccaaac ttacgtgagg gcatagcaga aggcctgccc aactggcatg aaatcaggag
     6001 ggcttctggc aacttccaca cctgtccact ctttggagtt ggtttctctc attgcttttt
     6061 ctagatctgg tttcatttct ctctacctgg gacctccctt ttctgaggat gtcctagggt
     6121 tgacctactt ggttatccag cgttgaaggg ttaggggata gacatggggg aagaagagcg
     6181 ggatgagaag agaatggaga gaatttggct aaaatctggg aaaggagagc actgctcatt
     6241 gatcactttt ccagtccagc ctaactcact ggggctgagg tgctactgct ggccgctggg
     6301 gataagccta aggctgttgt tgtgggaaac ttaggcttag attaatgctg aagaaggtac
     6361 ctcacagtgt gaaacctccc taagaagctc ccacctactc agtagctcca ctgcagcctc
     6421 ctttttggct cagcaatgat gttcttggat agttttcttg tccagaattc tgtaaatgag
     6481 gccagcaaga tgggcagcca gggggacact gtgacttctt agctggccca tagggtatct
     6541 gcaaggctgg tgggacagtg ttttagacct ggcatcatgt gtaacaaaga aggatgaaag
     6601 ttccttcccc ttcagggtag agagacgtct ctaactaaaa tgcagttttg gaaattacat
     6661 ggggggaagt tatttttatt tatatttgct gggcgtaggc caatccagga tggtagctgg
     6721 gatgccttcc ttcttaaagt ctgatcatgg cagggttatg cagggcactc tttcctcttt
     6781 ggccttctaa gcagactggg gagaagggat tctctggttt tctcttttcg cccatttatt
     6841 aggacttgcc ttctccctgg acagggagag aggctaggtt ggtgctctcc ccttactcta
     6901 ctcctactga cttagaacct ctggctgctg tttgggagcc caagaaaggt agtggaggtt
     6961 atgggctcaa aacaaaagaa aacaaagcaa aaaaacaata aggtggggaa ggcagatttc
     7021 cttctttaaa aaggaaaata ggaaaccctc caaggattgt gcaagtaaag acaatatgtc
     7081 gaatgcactg acccccctgg tgtagtagca ataaggaaaa atgaaatgac tttcctgtgc
     7141 acacagtcca acctgattgg tgtgtgatgt tgcacttagc agccatctgg tgggcatgtg
     7201 tgtctactct gggtttcact ttagtttcta aactttttat ccctctcaag tccagcatgg
     7261 ttggggaaat gtccctggag ccccacagct gtgtacttgt ttgcatttgt ttccctttga
     7321 gacttgtgtt tgtgtcctgc tttgagctgt accttgtcca gtccattgta aaattatccc
     7381 agcagctgta atatacagtt tcttctgaag caagcaacag cagcagcaca attctgtgtt
     7441 ttataaagac aacagtggct tctatttcta aagtgcggac tctctctctt tttttttcct
     7501 tagcaaagca aactgttggg attaattata atctctgata gattttacgt tagaataaca
     7561 gattgttaga agagcagaac catcactttc taaaggagta aagtgggtaa aacaaattcc
     7621 ggagtgttga aactgcagat tgtatgtaat cacaggtcct ccatttattc ttcattcaac
     7681 aaacatgcaa agcactgtgt ctagaagtat tatgagggga gtaagcaggc acaattcaaa
     7741 aatgaggaaa acagtgtttc tctctttaag gagtttaaaa agtttggtgg tggatatcag
     7801 tagccagatg gttctctggt accatttaga gagattatga ggactggaac aaggctctag
     7861 ggctgtatca atgaagatag aaaggaaagc gcaaattgga gagacacttg gggagataga
     7921 attaatagga ctccatggat gatggaacag gaagagagga gtagaggcta ataatgttca
     7981 ctcttcttga gcaagtgagt atattgggac attcctctag ccaagactgg ggggaaaggg
     8041 agactataga aggaaggtgg tacattttgt gaagaaagac aattagcctt gtttagactg
     8101 agttttgagg ttcccatggg gtaacaaggt taaggtttcc agtaaacatt tatgttttgg
     8161 tgctcaggga agactgcaaa actgtagtta tagatatgga attcataatc atatagatgg
     8221 taggtaaaac cataggaatg aacaagatgg cttagagaaa gagtagagca agagaaacct
     8281 agtgtacgaa tgtaggaaac aagagatgag gagaggaagt agaacctaag atgacagatc
     8341 acacatagat accttgtatg tttttgactg ctttaatgag atgggagaat agtcaagagt
     8401 ggaataggat ttaagaaaga caagattaac aacatgaaaa ctgctgcagt gaagggggag
     8461 ggttattttt ttctacttag tttgctgtct tccacaccat cttctctggg atctcgtaag
     8521 tatatggtca ttctccagta ttttttgaaa atgagcattg gaaaacctaa cttaaaccag
     8581 gccaagactg ggacttccag gttgttcacc acaaccacca gcaccatttc cacctccagc
     8641 ttcctcctat cctcaggaga tgcttgtaaa agaataaaat aaacaaacct aa
//
LOCUS       XM_032649988            8683 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC component 1 (AGO1),
            transcript variant X2, mRNA.
ACCESSION   XM_032649988
VERSION     XM_032649988.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8683
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8683
                     /gene="AGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 23 long SRA reads, 46
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762682"
     CDS             212..2785
                     /gene="AGO1"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X2"
                     /protein_id="XP_032505879.1"
                     /db_xref="GeneID:116762682"
                     /translation="MEAGPSGAAAGTYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFE
                     VDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVT
                     ALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQAL
                     DVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVS
                     ATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRK
                     YRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKH
                     TYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYI
                     QEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWA
                     IACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKN
                     TYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKIN
                     VKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYC
                     ATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYEL
                     LAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITH
                     PFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIP
                     APAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYF
                     A"
     misc_feature    311..703
                     /gene="AGO1"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    731..883
                     /gene="AGO1"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    884..1246
                     /gene="AGO1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1040..1042,1085..1087,1127..1129,1139..1141,
                     1193..1195,1214..1216,1220..1222)
                     /gene="AGO1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1379..2656
                     /gene="AGO1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1790..1792,1802..1804,1838..1849,1856..1858,
                     1880..1882,1889..1891,1901..1903,1913..1915)
                     /gene="AGO1"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1994..1996,2000..2002,2210..2212,2624..2626)
                     /gene="AGO1"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 cagctggccg ggcgctagct gggggagctg ctgcaggctc cgcggcggcg gctgcaacgg
       61 aggctgcggg ggcggcggcg cgagcggccg ggcttggggg ggtagccgag cccggcccgg
      121 gagcccaagc agctaaagtg cggggtacct aggcccttca cgctggactc cacagtctcc
      181 gggccgcctg acctccgcac gggtatatgg gatggaagcg ggaccctcgg gagcagctgc
      241 aggcacctac ctgccccccc tgcagcaggt gttccaggca cctcgccggc ctggcattgg
      301 caccgtgggg aaaccaatca agcttctggc caactacttt gaagtggaca tccctaagat
      361 tgacgtctac cactacgagg tggatatcaa gccggataag tgtcctcgca gagtcaaccg
      421 ggaagtggtg gaatacatgg tccagcattt caagcctcag atctttggtg atcgcaagcc
      481 cgtgtatgat ggaaagaaga acatttacac tgtcacagca ctgcccattg gcaatgaacg
      541 ggttgacttc gaggtgacaa tccctgggga agggaaggat cgaatcttca aggtctccat
      601 caagtggcta gccattgtga gctggcgcat gctgcatgag gccttggtta gtggccagat
      661 ccccgttccc ctggagtctg tgcaagccct ggatgtggcc atgaggcacc tggcatccat
      721 gaggtacacc cctgtgggcc gctccttctt ctcaccgcct gagggctact accacccgct
      781 ggggggtggg cgcgaggtct ggttcggctt tcaccagtct gtgcgccctg ccatgtggaa
      841 gatgatgctc aacattgatg tctcagccac tgccttctac aaggcgcagc cagtgattga
      901 gttcatgtgt gaggtgctgg acatcaggaa catagatgag cagcccaagc ccctcacgga
      961 ctctcagcgt gtgcgcttca ccaaggagat caagggcctg aaggtggaag tgacccactg
     1021 tggacagatg aagaggaaat accgcgtgtg taatgttacc cgccgccctg ccagccatca
     1081 gacgtttcct ttgcagctgg agagtggaca gactgtggag tgcacagtgg cacagtattt
     1141 caagcagaaa tataaccttc agctcaagta tccccacctg ccctgcctgc aagttggcca
     1201 ggaacaaaag catacctacc tgcccctaga ggtctgtaac attgtggctg ggcagcgctg
     1261 cattaagaag ctgactgaca accagacttc aaccatgata aaggctacag ctagatcggc
     1321 cccagacaga caagaggaga tcagccgcct gatgaagaat gccagctaca acctagatcc
     1381 ctacatccag gaatttggga tcaaggtgaa ggatgacatg acggaggtga cggggcgagt
     1441 gctgccggcg cccatcttgc agtacggcgg ccggaaccgg gccattgcga cacccaatca
     1501 aggtgtctgg gacatgcggg ggaaacagtt ctacaatgga attgagatca aagtctgggc
     1561 cattgcctgc ttcgcacccc aaaaacagtg tcgagaagaa gtgctcaaga acttcacaga
     1621 ccagctgcgg aagatttcca aggatgcagg gatgcccatc cagggccagc cttgcttctg
     1681 caaatatgcg cagggggcag acagcgtgga gcccatgttc cggcatctca agaacaccta
     1741 ctcagggctg cagctcatta tcgtcatcct gccagggaag acgccagtgt atgctgaagt
     1801 gaaacgtgtt ggagatacac tcttgggaat ggctacacag tgtgtgcaag tgaagaatgt
     1861 ggtcaagacc tcgcctcaga ctctgtccaa cctttgcctg aagatcaatg tcaaacttgg
     1921 tggcattaac aacatcctag ttccacacca acgctctgct gtctttcaac aaccagtgat
     1981 attcctggga gcagatgtta cacacccccc agcaggggat gggaaaaaac cttctatcac
     2041 agcagtggta ggcagtatgg atgcccaccc cagccgttac tgtgctactg tgcgggtgca
     2101 gcgacctcgg caggagatca ttgaagactt gtcctacatg gtacgtgagc tgctcatcca
     2161 gttctacaag tccacccgct tcaagcctac ccgcatcatc ttctaccgag atggggttcc
     2221 tgaaggccag ctcccccaga tcctccacta tgagctgctg gccattcgtg atgcctgcat
     2281 caaactggaa aaggactacc agcccgggat cacttatatt gtggtgcaga aacgccatca
     2341 cacccgcctt ttttgtgctg acaagaatga gcgaattggg aagagtggta acatcccagc
     2401 tgggaccact gtggacacca acatcaccca cccatttgag tttgacttct atctgtgcag
     2461 ccacgcaggc atccagggca ccagccgacc atcccattac tatgtccttt gggatgacaa
     2521 ccgtttcaca gcggatgagc tccagatctt gacgtaccag ctgtgccaca cttatgtacg
     2581 atgcacacgc tccgtctcaa ttccagcacc tgcctactat gcccgcttgg tggctttccg
     2641 ggcacgatac cacctagtgg acaaggagca tgacagtgga gaggggagcc acatatcggg
     2701 gcagagcaat gggcgggacc cccaggccct ggccaaagcc gtgcaggttc accaggatac
     2761 tctgcgcacc atgtacttcg cttgaaggca gaacgctgtt acctcactgg atagaagaaa
     2821 gctttccaag ccccaagagc tgtgccgccc aaatccagag gaagcaggga gggaggtggg
     2881 gcagggagga atgcagaagg ccttgtttcc tctacagagg gggcgaaagg gtggggaaca
     2941 gggccagtaa gccagaccac cagccagaaa tctctgatat tcacctcatg ccctccaccc
     3001 ctcaccccat cttgtcacat ctggccctga ctccactgga ccaagagagg cagccccggt
     3061 gcccaccata cacacagatg tcgcatgtga ctcacagtgc taaagactca tgcctgacag
     3121 cttggtaagg tcggccctgc agccctgcag tcaaaagctg gtaggtttgg gtttgatact
     3181 ttagatggga aagtgagggg cttgaaaagt gggtgggagg agggaaggat tttttaggag
     3241 ccttaatcag aaaaggtcta gatttgttta agaagaaaaa cgaaaccaga tgcagatcaa
     3301 tattttagga tactagatgt tttaatgggt tgagaatcca gcttgtagga agatttttaa
     3361 tgctaatggt ttggttgccc ctcccccagc tgccactcct ctttccctta ttcctctttc
     3421 tccacctttt ctaccccacc ttacaccttc tccctgacag acatccagcc cctagtaaga
     3481 cttaaggcac tatggcactt agctctgaag tgacacgacc ctgtcttcct tccgcctgct
     3541 ggtgggtaac cagtgccttc cctgtaacgg taatgctgca gaactgcaac cttttgtacc
     3601 tatttttggg ggggtggggg cggggtgggg gtgggagagg aggtaggtgg ggatgaaata
     3661 cccctaaccc aacaagcctc cagccagagc gccagctatt ttgcatttga aggagttgac
     3721 ttccatattc attgagcttt taaaaagatc gccacctcaa gatggttaaa atccattgac
     3781 atttgcactt tcagacatga caagtctctc ggagctgctg aggtgactgg cctctggcct
     3841 ttccacttac gtctcctttc ttcccgtccc cgcttcctcc ccacctgcct gggtctggag
     3901 ttactttcat agcatttctc actcttggct tctttttttt tccctgatgg tcaagtctgt
     3961 ttatgtttca atatttttta actggggtgt cttttaacaa acgatcctta ggtctaaaat
     4021 aagaaaaaaa aaaaaagcaa aaactaaatg ttatttttat accataactt gagtctattg
     4081 ccaaaatctg gaaaccctcc catgcccaat gagtttacat cccagaaaca ttgagccgtc
     4141 agaaggaact atgtacctga cttgttcttt ggcctggctc tgtagggggt ggttatctcc
     4201 ccaaggtggg gctcagtctc cacctttcct ctgtgcagat aatatctttc tcttgctgca
     4261 ggcacccctt ctgcactgcc ctgcactctt ttctgcaagt gcatcttccc ttcctctgga
     4321 ctgtcctctg acactttggc ttatcccaga tttcagtgtg tcctgtggat aggctgggga
     4381 attttgctgc tcccttttgc ttctgtttac acaaatgaat ttttcctgat ttcccactag
     4441 ggcatgtgag tgggtggcat aggcttttta aaaaattttt tcctgtcttc ctgggtagag
     4501 atggggtttg gctgtgttgc agaactggaa aagtaggggg ttctagcttg gggcctgttg
     4561 gccttgaagc aaggcttcct catttcttga ctgttcattt tttcctgtcc cactgcttgg
     4621 gatgaggagt tgcagcttca gtgtggaaat tcctcttttt gaggagcctg ggcttgggct
     4681 tgccccaatc tggtgatgaa gccatgacac tttagaccta gctcaggctt ggaggccagc
     4741 cagaggaagg ccggtctgaa tatgggcgta tgaagttaga gctaccattt cccctcccca
     4801 gcagcctttg tacagaccca gatttgctat gcaaaacagt ctatcccagg ttctgttctg
     4861 gttggctact ttgttcagca acttcacaaa acgtagcaca aacattgatt atggagaagg
     4921 catcaggact gttgagtaac tcttccttta cttctttcct gctggctaca gtgtggggtg
     4981 ccccatgggc acagcccagc tgaagaacag aatggagggc tctgggagga ggcagctcac
     5041 tggagagcct acattcctta cacaagtgcc taaagagagt gatgccaaca ctccatctgc
     5101 cctgtccatc gccttcatat actgtctatt ttgtgttcag tcaccctttg gggaggagag
     5161 ttctcttggg acagtgggct ctgagtgttc tcttcttggg tatgttttgg ggctgggatc
     5221 agggcagtat tcctggaggg tccagtcatt caccagcatt ttgcaaatgt ccatttgaga
     5281 gctggtggca gccacctact ctccacagca agtttgtgtt ctcccctttt tctctctttg
     5341 cctcactctc tccagttggg ttttgagctg aggcttgaaa tgcatttttt agccctttgg
     5401 cattgtacat gccatttaag aaataaaagc aaaagaaaca gcttgggcag tggcaagaat
     5461 atgacatctt gctgtgattt tctctatttc gttttatctt tgaaacttga aaaacaccct
     5521 tgaccttgag gattactctt gtttgaaagg tggtgcatgc agattgagaa gtggtgttgg
     5581 caacaagctt tggctttctt tgattttgtt caagtggtgc ttcttactta ggctctgaag
     5641 aagctctggg gagaccccag cctcatcctc ttagagaagt ctcctgctcc ctttgttcca
     5701 ctcttttacc ttccttttcc tcttctctct ttccctggcc tccttttatt ttattttctg
     5761 ttcagtcagc ttgcttgctg gcctccctgc ctgtctgcct ttgtgatgat gaattctctg
     5821 catggctaaa atgatcgcac tgttcgctgg caaggtcagg cttagctcct cggctgcaga
     5881 agaccaagaa tcttcttccc aagcccagtg atgtcctcac tgggctggac tgcccccaaa
     5941 cttacgtgag ggcatagcag aaggcctgcc caactggcat gaaatcagga gggcttctgg
     6001 caacttccac acctgtccac tctttggagt tggtttctct cattgctttt tctagatctg
     6061 gtttcatttc tctctacctg ggacctccct tttctgagga tgtcctaggg ttgacctact
     6121 tggttatcca gcgttgaagg gttaggggat agacatgggg gaagaagagc gggatgagaa
     6181 gagaatggag agaatttggc taaaatctgg gaaaggagag cactgctcat tgatcacttt
     6241 tccagtccag cctaactcac tggggctgag gtgctactgc tggccgctgg ggataagcct
     6301 aaggctgttg ttgtgggaaa cttaggctta gattaatgct gaagaaggta cctcacagtg
     6361 tgaaacctcc ctaagaagct cccacctact cagtagctcc actgcagcct cctttttggc
     6421 tcagcaatga tgttcttgga tagttttctt gtccagaatt ctgtaaatga ggccagcaag
     6481 atgggcagcc agggggacac tgtgacttct tagctggccc atagggtatc tgcaaggctg
     6541 gtgggacagt gttttagacc tggcatcatg tgtaacaaag aaggatgaaa gttccttccc
     6601 cttcagggta gagagacgtc tctaactaaa atgcagtttt ggaaattaca tggggggaag
     6661 ttatttttat ttatatttgc tgggcgtagg ccaatccagg atggtagctg ggatgccttc
     6721 cttcttaaag tctgatcatg gcagggttat gcagggcact ctttcctctt tggccttcta
     6781 agcagactgg ggagaaggga ttctctggtt ttctcttttc gcccatttat taggacttgc
     6841 cttctccctg gacagggaga gaggctaggt tggtgctctc cccttactct actcctactg
     6901 acttagaacc tctggctgct gtttgggagc ccaagaaagg tagtggaggt tatgggctca
     6961 aaacaaaaga aaacaaagca aaaaaacaat aaggtgggga aggcagattt ccttctttaa
     7021 aaaggaaaat aggaaaccct ccaaggattg tgcaagtaaa gacaatatgt cgaatgcact
     7081 gacccccctg gtgtagtagc aataaggaaa aatgaaatga ctttcctgtg cacacagtcc
     7141 aacctgattg gtgtgtgatg ttgcacttag cagccatctg gtgggcatgt gtgtctactc
     7201 tgggtttcac tttagtttct aaacttttta tccctctcaa gtccagcatg gttggggaaa
     7261 tgtccctgga gccccacagc tgtgtacttg tttgcatttg tttccctttg agacttgtgt
     7321 ttgtgtcctg ctttgagctg taccttgtcc agtccattgt aaaattatcc cagcagctgt
     7381 aatatacagt ttcttctgaa gcaagcaaca gcagcagcac aattctgtgt tttataaaga
     7441 caacagtggc ttctatttct aaagtgcgga ctctctctct ttttttttcc ttagcaaagc
     7501 aaactgttgg gattaattat aatctctgat agattttacg ttagaataac agattgttag
     7561 aagagcagaa ccatcacttt ctaaaggagt aaagtgggta aaacaaattc cggagtgttg
     7621 aaactgcaga ttgtatgtaa tcacaggtcc tccatttatt cttcattcaa caaacatgca
     7681 aagcactgtg tctagaagta ttatgagggg agtaagcagg cacaattcaa aaatgaggaa
     7741 aacagtgttt ctctctttaa ggagtttaaa aagtttggtg gtggatatca gtagccagat
     7801 ggttctctgg taccatttag agagattatg aggactggaa caaggctcta gggctgtatc
     7861 aatgaagata gaaaggaaag cgcaaattgg agagacactt ggggagatag aattaatagg
     7921 actccatgga tgatggaaca ggaagagagg agtagaggct aataatgttc actcttcttg
     7981 agcaagtgag tatattggga cattcctcta gccaagactg gggggaaagg gagactatag
     8041 aaggaaggtg gtacattttg tgaagaaaga caattagcct tgtttagact gagttttgag
     8101 gttcccatgg ggtaacaagg ttaaggtttc cagtaaacat ttatgttttg gtgctcaggg
     8161 aagactgcaa aactgtagtt atagatatgg aattcataat catatagatg gtaggtaaaa
     8221 ccataggaat gaacaagatg gcttagagaa agagtagagc aagagaaacc tagtgtacga
     8281 atgtaggaaa caagagatga ggagaggaag tagaacctaa gatgacagat cacacataga
     8341 taccttgtat gtttttgact gctttaatga gatgggagaa tagtcaagag tggaatagga
     8401 tttaagaaag acaagattaa caacatgaaa actgctgcag tgaaggggga gggttatttt
     8461 tttctactta gtttgctgtc ttccacacca tcttctctgg gatctcgtaa gtatatggtc
     8521 attctccagt attttttgaa aatgagcatt ggaaaaccta acttaaacca ggccaagact
     8581 gggacttcca ggttgttcac cacaaccacc agcaccattt ccacctccag cttcctccta
     8641 tcctcaggag atgcttgtaa aagaataaaa taaacaaacc taa
//
LOCUS       XM_032649998            8546 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC component 1 (AGO1),
            transcript variant X3, mRNA.
ACCESSION   XM_032649998
VERSION     XM_032649998.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8546
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8546
                     /gene="AGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762682"
     CDS             768..2648
                     /gene="AGO1"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X3"
                     /protein_id="XP_032505889.1"
                     /db_xref="GeneID:116762682"
                     /translation="MCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKR
                     KYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQK
                     HTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPY
                     IQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVW
                     AIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLK
                     NTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKI
                     NVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRY
                     CATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYE
                     LLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNIT
                     HPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSI
                     PAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMY
                     FA"
     misc_feature    768..1109
                     /gene="AGO1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(903..905,948..950,990..992,1002..1004,1056..1058,
                     1077..1079,1083..1085)
                     /gene="AGO1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1242..2519
                     /gene="AGO1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1653..1655,1665..1667,1701..1712,1719..1721,
                     1743..1745,1752..1754,1764..1766,1776..1778)
                     /gene="AGO1"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1857..1859,1863..1865,2073..2075,2487..2489)
                     /gene="AGO1"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 cagctggccg ggcgctagct gggggagctg ctgcaggctc cgcggcggcg gctgcaacgg
       61 aggctgcggg ggcggcggcg cgagcggccg ggcttggggg ggtagccgag cccggcccgg
      121 gagcccaagc agctaaagtg cggggtacct aggcccttca cgctggactc cacagtctcc
      181 gggccgcctg acctccgcac gggtatatgg gatggaagcg ggaccctcgg gagcagctgc
      241 aggcacctac ctgccccccc tgcagcaggt gttccaggca cctcgccggc ctggcattgg
      301 caccgtgggg aaaccaatca agcttctggc caactacttt gaagtggaca tccctaagat
      361 tgacgtctac cactacgagg tggatatcaa gccggataag tgtcctcgca gagtcaaccg
      421 ggaagtggtg gaatacatgg tccagcattt caagcctcag atctttggtg atcgcaagcc
      481 cgtgtatgat ggaaagaaga acatttacac tgtcacagca ctgcccattg gcaatgaacg
      541 ggttgacttc gaggtgacaa tccctgggga agggaaggat cgaatcttca aggtctccat
      601 caagtggcta gccattgtga gctggcgcat gctgcatgag gccttggtta gtggccagat
      661 ccccgttccc ctggagtctg tgcaagccct ggatgtggcc atgaggcacc tggcatccat
      721 gagtctcagc cactgccttc tacaaggcgc agccagtgat tgagttcatg tgtgaggtgc
      781 tggacatcag gaacatagat gagcagccca agcccctcac ggactctcag cgtgtgcgct
      841 tcaccaagga gatcaagggc ctgaaggtgg aagtgaccca ctgtggacag atgaagagga
      901 aataccgcgt gtgtaatgtt acccgccgcc ctgccagcca tcagacgttt cctttgcagc
      961 tggagagtgg acagactgtg gagtgcacag tggcacagta tttcaagcag aaatataacc
     1021 ttcagctcaa gtatccccac ctgccctgcc tgcaagttgg ccaggaacaa aagcatacct
     1081 acctgcccct agaggtctgt aacattgtgg ctgggcagcg ctgcattaag aagctgactg
     1141 acaaccagac ttcaaccatg ataaaggcta cagctagatc ggccccagac agacaagagg
     1201 agatcagccg cctgatgaag aatgccagct acaacctaga tccctacatc caggaatttg
     1261 ggatcaaggt gaaggatgac atgacggagg tgacggggcg agtgctgccg gcgcccatct
     1321 tgcagtacgg cggccggaac cgggccattg cgacacccaa tcaaggtgtc tgggacatgc
     1381 gggggaaaca gttctacaat ggaattgaga tcaaagtctg ggccattgcc tgcttcgcac
     1441 cccaaaaaca gtgtcgagaa gaagtgctca agaacttcac agaccagctg cggaagattt
     1501 ccaaggatgc agggatgccc atccagggcc agccttgctt ctgcaaatat gcgcaggggg
     1561 cagacagcgt ggagcccatg ttccggcatc tcaagaacac ctactcaggg ctgcagctca
     1621 ttatcgtcat cctgccaggg aagacgccag tgtatgctga agtgaaacgt gttggagata
     1681 cactcttggg aatggctaca cagtgtgtgc aagtgaagaa tgtggtcaag acctcgcctc
     1741 agactctgtc caacctttgc ctgaagatca atgtcaaact tggtggcatt aacaacatcc
     1801 tagttccaca ccaacgctct gctgtctttc aacaaccagt gatattcctg ggagcagatg
     1861 ttacacaccc cccagcaggg gatgggaaaa aaccttctat cacagcagtg gtaggcagta
     1921 tggatgccca ccccagccgt tactgtgcta ctgtgcgggt gcagcgacct cggcaggaga
     1981 tcattgaaga cttgtcctac atggtacgtg agctgctcat ccagttctac aagtccaccc
     2041 gcttcaagcc tacccgcatc atcttctacc gagatggggt tcctgaaggc cagctccccc
     2101 agatcctcca ctatgagctg ctggccattc gtgatgcctg catcaaactg gaaaaggact
     2161 accagcccgg gatcacttat attgtggtgc agaaacgcca tcacacccgc cttttttgtg
     2221 ctgacaagaa tgagcgaatt gggaagagtg gtaacatccc agctgggacc actgtggaca
     2281 ccaacatcac ccacccattt gagtttgact tctatctgtg cagccacgca ggcatccagg
     2341 gcaccagccg accatcccat tactatgtcc tttgggatga caaccgtttc acagcggatg
     2401 agctccagat cttgacgtac cagctgtgcc acacttatgt acgatgcaca cgctccgtct
     2461 caattccagc acctgcctac tatgcccgct tggtggcttt ccgggcacga taccacctag
     2521 tggacaagga gcatgacagt ggagagggga gccacatatc ggggcagagc aatgggcggg
     2581 acccccaggc cctggccaaa gccgtgcagg ttcaccagga tactctgcgc accatgtact
     2641 tcgcttgaag gcagaacgct gttacctcac tggatagaag aaagctttcc aagccccaag
     2701 agctgtgccg cccaaatcca gaggaagcag ggagggaggt ggggcaggga ggaatgcaga
     2761 aggccttgtt tcctctacag agggggcgaa agggtgggga acagggccag taagccagac
     2821 caccagccag aaatctctga tattcacctc atgccctcca cccctcaccc catcttgtca
     2881 catctggccc tgactccact ggaccaagag aggcagcccc ggtgcccacc atacacacag
     2941 atgtcgcatg tgactcacag tgctaaagac tcatgcctga cagcttggta aggtcggccc
     3001 tgcagccctg cagtcaaaag ctggtaggtt tgggtttgat actttagatg ggaaagtgag
     3061 gggcttgaaa agtgggtggg aggagggaag gattttttag gagccttaat cagaaaaggt
     3121 ctagatttgt ttaagaagaa aaacgaaacc agatgcagat caatatttta ggatactaga
     3181 tgttttaatg ggttgagaat ccagcttgta ggaagatttt taatgctaat ggtttggttg
     3241 cccctccccc agctgccact cctctttccc ttattcctct ttctccacct tttctacccc
     3301 accttacacc ttctccctga cagacatcca gcccctagta agacttaagg cactatggca
     3361 cttagctctg aagtgacacg accctgtctt ccttccgcct gctggtgggt aaccagtgcc
     3421 ttccctgtaa cggtaatgct gcagaactgc aaccttttgt acctattttt gggggggtgg
     3481 gggcggggtg ggggtgggag aggaggtagg tggggatgaa atacccctaa cccaacaagc
     3541 ctccagccag agcgccagct attttgcatt tgaaggagtt gacttccata ttcattgagc
     3601 ttttaaaaag atcgccacct caagatggtt aaaatccatt gacatttgca ctttcagaca
     3661 tgacaagtct ctcggagctg ctgaggtgac tggcctctgg cctttccact tacgtctcct
     3721 ttcttcccgt ccccgcttcc tccccacctg cctgggtctg gagttacttt catagcattt
     3781 ctcactcttg gcttcttttt ttttccctga tggtcaagtc tgtttatgtt tcaatatttt
     3841 ttaactgggg tgtcttttaa caaacgatcc ttaggtctaa aataagaaaa aaaaaaaaag
     3901 caaaaactaa atgttatttt tataccataa cttgagtcta ttgccaaaat ctggaaaccc
     3961 tcccatgccc aatgagttta catcccagaa acattgagcc gtcagaagga actatgtacc
     4021 tgacttgttc tttggcctgg ctctgtaggg ggtggttatc tccccaaggt ggggctcagt
     4081 ctccaccttt cctctgtgca gataatatct ttctcttgct gcaggcaccc cttctgcact
     4141 gccctgcact cttttctgca agtgcatctt cccttcctct ggactgtcct ctgacacttt
     4201 ggcttatccc agatttcagt gtgtcctgtg gataggctgg ggaattttgc tgctcccttt
     4261 tgcttctgtt tacacaaatg aatttttcct gatttcccac tagggcatgt gagtgggtgg
     4321 cataggcttt ttaaaaaatt ttttcctgtc ttcctgggta gagatggggt ttggctgtgt
     4381 tgcagaactg gaaaagtagg gggttctagc ttggggcctg ttggccttga agcaaggctt
     4441 cctcatttct tgactgttca ttttttcctg tcccactgct tgggatgagg agttgcagct
     4501 tcagtgtgga aattcctctt tttgaggagc ctgggcttgg gcttgcccca atctggtgat
     4561 gaagccatga cactttagac ctagctcagg cttggaggcc agccagagga aggccggtct
     4621 gaatatgggc gtatgaagtt agagctacca tttcccctcc ccagcagcct ttgtacagac
     4681 ccagatttgc tatgcaaaac agtctatccc aggttctgtt ctggttggct actttgttca
     4741 gcaacttcac aaaacgtagc acaaacattg attatggaga aggcatcagg actgttgagt
     4801 aactcttcct ttacttcttt cctgctggct acagtgtggg gtgccccatg ggcacagccc
     4861 agctgaagaa cagaatggag ggctctggga ggaggcagct cactggagag cctacattcc
     4921 ttacacaagt gcctaaagag agtgatgcca acactccatc tgccctgtcc atcgccttca
     4981 tatactgtct attttgtgtt cagtcaccct ttggggagga gagttctctt gggacagtgg
     5041 gctctgagtg ttctcttctt gggtatgttt tggggctggg atcagggcag tattcctgga
     5101 gggtccagtc attcaccagc attttgcaaa tgtccatttg agagctggtg gcagccacct
     5161 actctccaca gcaagtttgt gttctcccct ttttctctct ttgcctcact ctctccagtt
     5221 gggttttgag ctgaggcttg aaatgcattt tttagccctt tggcattgta catgccattt
     5281 aagaaataaa agcaaaagaa acagcttggg cagtggcaag aatatgacat cttgctgtga
     5341 ttttctctat ttcgttttat ctttgaaact tgaaaaacac ccttgacctt gaggattact
     5401 cttgtttgaa aggtggtgca tgcagattga gaagtggtgt tggcaacaag ctttggcttt
     5461 ctttgatttt gttcaagtgg tgcttcttac ttaggctctg aagaagctct ggggagaccc
     5521 cagcctcatc ctcttagaga agtctcctgc tccctttgtt ccactctttt accttccttt
     5581 tcctcttctc tctttccctg gcctcctttt attttatttt ctgttcagtc agcttgcttg
     5641 ctggcctccc tgcctgtctg cctttgtgat gatgaattct ctgcatggct aaaatgatcg
     5701 cactgttcgc tggcaaggtc aggcttagct cctcggctgc agaagaccaa gaatcttctt
     5761 cccaagccca gtgatgtcct cactgggctg gactgccccc aaacttacgt gagggcatag
     5821 cagaaggcct gcccaactgg catgaaatca ggagggcttc tggcaacttc cacacctgtc
     5881 cactctttgg agttggtttc tctcattgct ttttctagat ctggtttcat ttctctctac
     5941 ctgggacctc ccttttctga ggatgtccta gggttgacct acttggttat ccagcgttga
     6001 agggttaggg gatagacatg ggggaagaag agcgggatga gaagagaatg gagagaattt
     6061 ggctaaaatc tgggaaagga gagcactgct cattgatcac ttttccagtc cagcctaact
     6121 cactggggct gaggtgctac tgctggccgc tggggataag cctaaggctg ttgttgtggg
     6181 aaacttaggc ttagattaat gctgaagaag gtacctcaca gtgtgaaacc tccctaagaa
     6241 gctcccacct actcagtagc tccactgcag cctccttttt ggctcagcaa tgatgttctt
     6301 ggatagtttt cttgtccaga attctgtaaa tgaggccagc aagatgggca gccaggggga
     6361 cactgtgact tcttagctgg cccatagggt atctgcaagg ctggtgggac agtgttttag
     6421 acctggcatc atgtgtaaca aagaaggatg aaagttcctt ccccttcagg gtagagagac
     6481 gtctctaact aaaatgcagt tttggaaatt acatgggggg aagttatttt tatttatatt
     6541 tgctgggcgt aggccaatcc aggatggtag ctgggatgcc ttccttctta aagtctgatc
     6601 atggcagggt tatgcagggc actctttcct ctttggcctt ctaagcagac tggggagaag
     6661 ggattctctg gttttctctt ttcgcccatt tattaggact tgccttctcc ctggacaggg
     6721 agagaggcta ggttggtgct ctccccttac tctactccta ctgacttaga acctctggct
     6781 gctgtttggg agcccaagaa aggtagtgga ggttatgggc tcaaaacaaa agaaaacaaa
     6841 gcaaaaaaac aataaggtgg ggaaggcaga tttccttctt taaaaaggaa aataggaaac
     6901 cctccaagga ttgtgcaagt aaagacaata tgtcgaatgc actgaccccc ctggtgtagt
     6961 agcaataagg aaaaatgaaa tgactttcct gtgcacacag tccaacctga ttggtgtgtg
     7021 atgttgcact tagcagccat ctggtgggca tgtgtgtcta ctctgggttt cactttagtt
     7081 tctaaacttt ttatccctct caagtccagc atggttgggg aaatgtccct ggagccccac
     7141 agctgtgtac ttgtttgcat ttgtttccct ttgagacttg tgtttgtgtc ctgctttgag
     7201 ctgtaccttg tccagtccat tgtaaaatta tcccagcagc tgtaatatac agtttcttct
     7261 gaagcaagca acagcagcag cacaattctg tgttttataa agacaacagt ggcttctatt
     7321 tctaaagtgc ggactctctc tctttttttt tccttagcaa agcaaactgt tgggattaat
     7381 tataatctct gatagatttt acgttagaat aacagattgt tagaagagca gaaccatcac
     7441 tttctaaagg agtaaagtgg gtaaaacaaa ttccggagtg ttgaaactgc agattgtatg
     7501 taatcacagg tcctccattt attcttcatt caacaaacat gcaaagcact gtgtctagaa
     7561 gtattatgag gggagtaagc aggcacaatt caaaaatgag gaaaacagtg tttctctctt
     7621 taaggagttt aaaaagtttg gtggtggata tcagtagcca gatggttctc tggtaccatt
     7681 tagagagatt atgaggactg gaacaaggct ctagggctgt atcaatgaag atagaaagga
     7741 aagcgcaaat tggagagaca cttggggaga tagaattaat aggactccat ggatgatgga
     7801 acaggaagag aggagtagag gctaataatg ttcactcttc ttgagcaagt gagtatattg
     7861 ggacattcct ctagccaaga ctggggggaa agggagacta tagaaggaag gtggtacatt
     7921 ttgtgaagaa agacaattag ccttgtttag actgagtttt gaggttccca tggggtaaca
     7981 aggttaaggt ttccagtaaa catttatgtt ttggtgctca gggaagactg caaaactgta
     8041 gttatagata tggaattcat aatcatatag atggtaggta aaaccatagg aatgaacaag
     8101 atggcttaga gaaagagtag agcaagagaa acctagtgta cgaatgtagg aaacaagaga
     8161 tgaggagagg aagtagaacc taagatgaca gatcacacat agataccttg tatgtttttg
     8221 actgctttaa tgagatggga gaatagtcaa gagtggaata ggatttaaga aagacaagat
     8281 taacaacatg aaaactgctg cagtgaaggg ggagggttat ttttttctac ttagtttgct
     8341 gtcttccaca ccatcttctc tgggatctcg taagtatatg gtcattctcc agtatttttt
     8401 gaaaatgagc attggaaaac ctaacttaaa ccaggccaag actgggactt ccaggttgtt
     8461 caccacaacc accagcacca tttccacctc cagcttcctc ctatcctcag gagatgcttg
     8521 taaaagaata aaataaacaa acctaa
//
LOCUS       XM_032650009            9527 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC catalytic component 3
            (AGO3), transcript variant X1, mRNA.
ACCESSION   XM_032650009
VERSION     XM_032650009.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9527
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9527
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 46 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116762692"
     CDS             474..3056
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X1"
                     /protein_id="XP_032505900.1"
                     /db_xref="GeneID:116762692"
                     /translation="MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKI
                     DVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVAT
                     TGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPV
                     HAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNI
                     DVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTM
                     RRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQE
                     QKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETD
                     PFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIK
                     MWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRH
                     LKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCL
                     KINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPS
                     RYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLY
                     YELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTD
                     ITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSV
                     SIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRT
                     MYFA"
     misc_feature    690..974
                     /gene="AGO3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    1002..1154
                     /gene="AGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    1155..1517
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1311..1313,1356..1358,1398..1400,1410..1412,
                     1464..1466,1485..1487,1491..1493)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1650..2927
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2061..2063,2073..2075,2109..2120,2127..2129,
                     2151..2153,2160..2162,2172..2174,2184..2186)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2265..2267,2271..2273,2481..2483,2895..2897)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 ctcggcgccg gctccgcgac acctcccctg cgtcctccgc gccggccgcg cccgcacaga
       61 cgtcgcgtcc gcacggttag ggcggagagg cgaggcttgg atgtcgggcg agagcccggg
      121 cagcggaact gacgccagca ggcttccggg ggcggccccc ggggaggtcg gcggcggcgc
      181 cgcagtcgtg gaggggcact gggatcgtag gcggccgcgg gcgacgcaag ttccgcacgg
      241 agcccgtctc ttctcgcctc acgcttcttc ctctctccta gttgcgcgct gcctcccgac
      301 ggccgctctt cctgacgaga gctttcggag tgcggttgct gaggagaagc cgtcaccacc
      361 ccgcctcggg gccgagtgag ggttcctgtc gcgccgcgtc gccccctgcg ccgcctcctt
      421 gccctcagtg gcgggcgccc ttctcgctgg aagcattccc cccagctcca tgaatggaaa
      481 tcggctccgc aggacccgtt ggggcccagc ccctactcat ggtgcccaga agacctggct
      541 atggcaccat gggcaaaccc attaagttgc tggctaactg ttttcaagtt gaaattccaa
      601 agattgatgt ctacctctat gaggtagata ttaaaccaga caagtgtcct aggagagtga
      661 acagggaggt ggttgactca atggttcagc attttaaagt aactatattt ggggaccgta
      721 gaccagttta tgatggaaaa agaagccttt acacagccaa tccacttcct gtggcaacta
      781 caggggtaga tttagatgtt actttacctg gggaaggtgg aaaagatcga cctttcaagg
      841 tgtcaatcaa atttgtctct cgggtgagtt ggcacctact acatgaagta ctgacaggac
      901 ggaccttgcc agagccactg gaattagaca agccaatcag cactaatcct gtccatgctg
      961 ttgatgtggt gctacgacat ctgccctcca tgaaatatac gcctgtgggg cgttcctttt
     1021 tctcagctcc agaaggatat gaccaccctc tgggaggggg cagggaagtt tggtttggat
     1081 tccatcagtc tgttcggcct gccatgtgga aaatgatgct taatattgat gtttctgcca
     1141 ctgccttcta caaagcacaa cctgtaattc agttcatgtg tgaagttctt gacattcata
     1201 atattgatga gcagccaaga cctctgactg attctcatcg ggtaaaattc accaaagaga
     1261 taaaaggtct gaaggttgaa gtgactcatt gtggaacaat gagacggaaa taccgtgttt
     1321 gtaatgtaac aagaaggcct gccagtcatc aaacctttcc tttacagtta gaaaatggcc
     1381 aaactgtgga gagaacagta gcacagtatt tcagagaaaa atatactctt cagctgaagt
     1441 acccacacct tccctgtctg caagtggggc aggagcagaa acatacctat ctgccactag
     1501 aagtctgtaa tattgtggca gggcaacgat gtatcaagaa gctaacggac aatcaaacct
     1561 ccactatgat caaagcaaca gcaagatctg caccagatag acaagaggaa attagcagat
     1621 tggtaagaag tgcaaattat gaaacagatc catttgttca ggagtttcaa tttaaagttc
     1681 gggatgaaat ggcccatgta accggacgcg tacttccagc acctatgctc cagtatggtg
     1741 gccggaatcg gacagtagca acaccaagcc acggagtatg ggacatgcga gggaaacagt
     1801 tccacacagg agttgaaatc aaaatgtggg ctatagcttg ttttgccaca cagaggcagt
     1861 gcagagaaga aatattgaag ggtttcacgg accagctgcg taagatttct aaagatgcag
     1921 ggatgcccat ccagggccag ccttgcttct gcaaatacgc gcagggggca gacagcgtgg
     1981 agcccatgtt ccggcatctc aagaacacgt actctgggct acagctcatt attgtcatcc
     2041 tgccagggaa gacaccagtg tatgcggagg tgaaacgtgt tggagataca cttttgggta
     2101 tggctacaca gtgtgttcaa gtcaagaatg taataaaaac atcccctcaa actctctcaa
     2161 acctgtgcct aaagataaat gttaaacttg gagggatcaa taatattctt gtacctcatc
     2221 aaagaccttc tgtgttccag caaccagtga tctttttggg agcagatgtc actcatccac
     2281 cagctggtga tgggaagaag ccttctattg ctgctgttgt aggtagtatg gatgcccacc
     2341 caagcagata ctgtgctaca gtaagagttc agagaccccg acaggagatc atccaggacc
     2401 ttgcctccat ggtccgagaa cttctcattc agttttataa gtcaactcgg ttcaaaccta
     2461 ctcgtatcat cttttatcgg gatggtgttt cagaggggca gtttaggcag gtattatatt
     2521 atgaactact agcaattcga gaagcctgca tcagtttgga gaaagactat caacctggaa
     2581 taacttacat tgtagttcag aagagacatc acactcgatt attttgtgct gataggactg
     2641 aaagggtcgg aagaagtggc aatatcccag ctggaacaac agttgataca gacattacac
     2701 acccatatga gtttgatttt tacctctgta gccatgctgg aatacagggt accagccgtc
     2761 cttcacacta tcatgtttta tgggatgata actgctttac tgcagatgaa cttcaactgc
     2821 taacttacca gctctgccac acttacgtgc gctgcacacg atctgtttct atacctgcac
     2881 cagcgtatta tgctcacctg gtagcattta gagccagata tcatcttgtg gacaaagaac
     2941 atgacagtgc tgaaggaagt cacgtttcag gacagagcaa tggacgagat ccacaggctc
     3001 ttgccaaggc tgtacagatt caccaagata ccttacgcac aatgtacttt gcttaaaaag
     3061 tctcagaata ttctctgaga ggaagaactg gaagatgaat caacatacaa cttatgtttc
     3121 cagtggagtc agctgagtgg ggatgcctcc agccatacag aaaccaacac tgtgtggggg
     3181 ccagggtatg atctttatgt tgatacaagg aagattgttt acttcatcaa ggaacacagc
     3241 accattatgc aatatgaaac cagccaactg cttttttgtg cggtctcctg taggaagtat
     3301 cgcgatcatt ttgttttcac tttcttgtag tctaaccctt ttaatgcctt tacctcaagt
     3361 tgcttggcag cacaactctt tgcaaaaaaa aaaagtaaag aaaaagtaaa tgatggtttt
     3421 ttaaaaaaca cacctatatg aataatcaaa gtgattgttc acaattatgt gtgcaaaaaa
     3481 tgtgcattca tgtattcttg taaaagttat ctgtatattt tacttatata catgcatact
     3541 gcatatgcat atatatctgt atctatactg ataatagata tatatgtatc tctgtatata
     3601 ttttatagtt cattccattg gggaactttc tttccctttt attatcctcc caccaccact
     3661 atgatttctc tctctaccgc ccttgccttc atcacctaca tttgtttttc cctgatgcta
     3721 ccagtaacat tcagatgttc atgtatctgg ttcatttgaa tataaagcat ggcaaactag
     3781 atttttattt tgcacgccct actcctgtct tgtctcatac ataattctga gtcctcaact
     3841 cttggtattg ctttcttaaa ctatatatat atatatatat atatatatat atatatacac
     3901 acacacatat atatataaaa aatatgtttt tgtgagagtg aatgtctgcc ccctcctgct
     3961 ctcaacttac atttgccatt tgtgcaatgt gtacataagc agtagcaacc caaactattc
     4021 tttttcttta gtgagtttgt taaagctgct ataaatatat taaaaaaaaa aaacacaact
     4081 ttgtcagaag ttgtaactct ctatataagt gatatgtatt ctaaagtctt ctgtttctat
     4141 gtgttataca tggaaatccc ttaaaacttt tataaagggt aaatatttta aatgattgga
     4201 actgtgtagg gttgaggcct ctgaaattgg gtggagagaa gggattgtgg agggtttttt
     4261 gggttttttt ttactagttt atttgctgcc tctcatacct taatgtgatt ttcatatata
     4321 tatattttta tatatatgtg tgttgtatat atataaacat atatgtatgt gttttgaagt
     4381 atagcttcct tttcttttat atttattaga atagtgcttt aataattata gaatcatatt
     4441 ggcaacatct tttatagaaa tataatcatg tttattttaa gaactgacaa cttgtttttg
     4501 ctctctttta gtgcaataag cagttttaaa agaaagctgt gtctgtttga catctttacc
     4561 acagatagtg ggagaaacag gcacctccat aattttaaaa gggcaaagta tatagcctta
     4621 atttcagaag gaaagttttg taattttcaa gtttaaagca tgtcttataa aaatcataat
     4681 gaaaatgaag gaagttaaat ttcctaaatg agtattgacc ttgaatatta gaaataaagt
     4741 tgaagaactt tgatttaagt aatgacagcg actagcttta gatttagaag atatttaaat
     4801 tctttgaaaa tagatcatgt ttattgaaaa atcatactgg taaggtgccc attttcactt
     4861 actaacatga gtcaggaaaa tataaaatga tattttaaaa actttttttg ctaattcatc
     4921 accagtgtaa ctttcctttt aaaattaggg tgatggtgac aaaggaagtt aggactttga
     4981 gcatttgaaa tgagttaaat cactgaaata ttgaaaaaag ttttgcaaaa cttttgtttt
     5041 attgacttca ctttaagata ttaaaaaata ctataaagct gtcaaaacca agtttatcag
     5101 taaccttgga ttcaggggag ctttgcactt tgtaactcat gaaaatagca ttttaatttt
     5161 tttttttttt tttttgcact ggttcagagt atagatatta cagattgttt ccagtgggca
     5221 ttgttgttaa cctttcagaa ttccatctgc acatgaaaac aaatggatta gctctttagt
     5281 tctctcttac ctataatcca cacttattgc caatttactg tattttgagc ctaaaatctg
     5341 agcccatatc ctccaacagg tatgaaatct tttgtccctc tgccagaaaa ctaagaaagt
     5401 actgtatttt gtatgtttat tatattgaag tgtctgaaat gcaatttaca acactgtttt
     5461 aaagctcttt acataaggta atgtttgtgt agtgtataca tttttctccc aaccctcccc
     5521 cctcctccaa aaaatttcta taaagagtgt atttttttta cattgaaatt tcactgaata
     5581 taggcaagag cataggcaag agaagaaaat agtatatcct aggtggtaaa aacctgatgg
     5641 cgtatgtttg ctcagtatga gtaaaacatc ttcctttatc agtgggagct gtacagattg
     5701 acgtggaaaa cgttagagcc cagggaagaa ctgtagataa cctttcccta tttacctgct
     5761 ttacctaatt ttcagtcact taatctcaca tgtgctaaag taaagcctat aatttaaaac
     5821 tatttagaag gacttttaca gaggaaaaaa atttttttta atataaagct ttacatttga
     5881 agtgagttct ttttagggtg ctcttagagt ttcaacattg ctagtttaaa gttggttaac
     5941 ttgaaagaat atgtatagta tattctattt tgcttactaa caaattggta tatcaaactc
     6001 aattataaga aactttgtgc ttagaacttt aaggtaaata ctaagtggca aatatttttt
     6061 gaaatttgtt tcgttattat acttctggcg tagaattgct gatctttttt tatttaaaaa
     6121 aaaaaaaaaa ggttgttttg agtttaatgg tcatgaaact caacagtgac ctttctgttc
     6181 ctgcccttgc tcactaacta tacagtgaat gctaaatttc tgtctgctgt tttctgtgat
     6241 ataagagtga ctttaaaatg tcagtccgag caactggtat aatagatttt catgtgaagc
     6301 agaattggga gtttaatgta tattctggat ggcaaatgtg taaagtgctg atacatgttt
     6361 tatattacag tatcacgtta ctggcattga ggaccatgca tttataatac cgtagctgct
     6421 atatttattt aatgaagtag agtctgacag ttactgcact taacagtaag gaaatgagca
     6481 ggattcaagg ctagtgttag actttttttt ttttcctaaa taagatttaa gaacatgaaa
     6541 tatcaaggta acaaagggtg ctgccaattt agtttcaatt taatatcagg atactctttc
     6601 tttgttttag aaatgtggat ttttacttta gcagttttgg aaaagggtac ctcagcctcc
     6661 tcagtactgg tttttagcat atttttcaca ggagtacagg tgccctttat ttttttctta
     6721 atatttacct ttaaacaagt ttctcagaaa aagtactctg tagaaatctt cctgtttgta
     6781 acctattaat ttatttatct tcctacaaga gagtctaggt gggattctag taggaatgta
     6841 ctgggtgttt tagaaggcac ttgataaaga ttcatctcta ctttctagca tggagacttc
     6901 tagccctcta aacacctata ctggttttcc aaactaggtt ctctgatgac ccaccactgc
     6961 ctaaagttta cttatatatt ctctaatgga ttttagtatg acagacccca tgacaggctt
     7021 agtcatgaca gacttaaaag taagactaag gagatagaag ctgagttgcc attcagtaaa
     7081 aacggctggc tgaggatctc aacgtttaag gaaaaggtga acactcagag tgccagtaat
     7141 cagtctgaag gatctattat tgatggatta tagaccagga attagagact cttattcaag
     7201 gaatttggtg ggtgtttgat tcagaggcca acatgaattt gccatgggtg gtgattttta
     7261 tgaaatctgt gaagctagcc acttggattc agctagaata ttttgtagtc ttactgttaa
     7321 aacttgatag tgatgttttg ccaagaagct taactgacag ctcgggataa attttattca
     7381 gtatcattaa gcctgggtta aatatttatt taactcatcc tcttagatgt tctcctactg
     7441 aatagttttt aaagacaagt tgcccctaac agtaacttgc tacttaaatt atcttttatg
     7501 agttatcagt caagctgcaa aaggacacca ttgaactggc atctttattt tggctttttt
     7561 aatccttttc attctttttg agaattcatg gatgtgttaa agcttcaata ataatacctg
     7621 ggagacttta tcaagtgagg cctttgtgag tggcggtata accctgactc taaagtctgt
     7681 ctttattttc ctttttccct ctcatttgat catataaagc actttgtgat tctacaggag
     7741 tcgaaaaaca agccaagaat aatgtgtaaa atcagtacat agatgtgaaa gtcagaattt
     7801 tctccaaaaa atctttttta aaaaatttcc tgcttatact aagaacattt ttgatcgatg
     7861 gcaatattgg aaatgatgct gtgattagtg aaacctaaac tgactcccag gaagaaaaat
     7921 tcagtctccc tctctccctc tctctctctc tctctctgtg tgtgtgtgtg tgtgtatata
     7981 tatatatata tatatatata tatatatata tatagcctca aagggaaaaa tatttttaac
     8041 tttttcctac ttttaaaagt ggtacacttc agtttataat tttccatgtt ggtcaaaatc
     8101 atttctttta actaaggtat aatggtcaag acttatgcta atattatcta ctgctagttc
     8161 aattttattt ttctttaccc atcaaagata gtgctctata tttttacatc gttgtaagaa
     8221 tcttttgctc ttaaagtacg gaagttaaag attttaattt gatttaaaga tagaagttta
     8281 ataaatttca tatggagggt tgagatttac caatgagaag ccctattaaa atatcatgta
     8341 gccaacagtg tgacaaaatt aagatgctat caaatcatct gtctggccat tggtctccct
     8401 tcctttttga aatcaatgtc ttaggtaacc aaactctaat gttgtgtcca tgttagcgtg
     8461 tcagtaaagc agagatgttc ttcagggtag acactgaatt aaatttttaa atcatttttt
     8521 aaagcaaggc ggttcttaga aagtgccttt tcagaagatg gtgctgtaga tttttatttt
     8581 tcaaatagca tgaggctaaa aatttgaaag ataaattatt ttagaattcc aagagtatga
     8641 ccgtttcata taaataatgt tatttgttgt tctgaatctg gtccaaggga accaagtaaa
     8701 gcttttattc agtaaagtat ctaagtaaat gctcaccaaa tatattttgt aagtttaaga
     8761 acacagtttt taacagaatt aaccgtttca gttctcagct gtgttgcagg tattatataa
     8821 ggcatacaaa acagcaagtt tgcttaactt tttaacaaga gtatggatat agtagtaagt
     8881 gcccgacagc aaaggtaact tgccagaaat tatgtcatag gctacgtttt cccccccagc
     8941 atattgaccc ttttgtaaat atctactggc agcctcttct aattaatctt tattaaagaa
     9001 gactgcttat aaagatggag ccaagtcatc atggaaatca gtgtaagagg agaagtaaaa
     9061 tgattctcta tctttaggga aattttttct ttttcaggca gcaagaaata ttctaaatgt
     9121 ttccctcttt tttctagcat aggtgaaaag tgatgacagt gcatctatat gatcaattaa
     9181 ttagacatag aacaggtaaa attgggcttt ggaggaaata agtaagaggg aggataatag
     9241 caggactatt catactggtt ggtaatttat ctaccagaaa gcgattttcc cctgaactag
     9301 gaagtagtaa acagcagtaa atgatcacct aaccagttct tgcttgtgaa tttggtgagc
     9361 actcttccag aaaatagact taaaaacaca caaaaaaaca cacctcagta accttgtatg
     9421 ctgcattatg taataatgat agtaaactta tattgattgt ttggagtgta ctatgtctgt
     9481 ctgcaaatat acatgcacat taaactcttt cattttttat aatgtca
//
LOCUS       XM_032650016            8959 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC catalytic component 3
            (AGO3), transcript variant X2, mRNA.
ACCESSION   XM_032650016
VERSION     XM_032650016.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8959
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8959
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762692"
     CDS             47..2488
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X2"
                     /protein_id="XP_032505907.1"
                     /db_xref="GeneID:116762692"
                     /translation="MMESKDLVPEYRKWWLREVVDSMVQHFKVTIFGDRRPVYDGKRS
                     LYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPL
                     ELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSV
                     RPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKG
                     LKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKY
                     PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEIS
                     RLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMR
                     GKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQ
                     GADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIK
                     TSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIA
                     AVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDG
                     VSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSG
                     NIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQL
                     CHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAK
                     AVQIHQDTLRTMYFA"
     misc_feature    122..406
                     /gene="AGO3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    434..586
                     /gene="AGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    587..949
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(743..745,788..790,830..832,842..844,896..898,
                     917..919,923..925)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1082..2359
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1493..1495,1505..1507,1541..1552,1559..1561,
                     1583..1585,1592..1594,1604..1606,1616..1618)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1697..1699,1703..1705,1913..1915,2327..2329)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 ggcttactca acaacatttc taatagcaaa gtctgtgcac cagagcatga tggagtcaaa
       61 agacttggta ccagaatata ggaagtggtg gttgagggag gtggttgact caatggttca
      121 gcattttaaa gtaactatat ttggggaccg tagaccagtt tatgatggaa aaagaagcct
      181 ttacacagcc aatccacttc ctgtggcaac tacaggggta gatttagatg ttactttacc
      241 tggggaaggt ggaaaagatc gacctttcaa ggtgtcaatc aaatttgtct ctcgggtgag
      301 ttggcaccta ctacatgaag tactgacagg acggaccttg ccagagccac tggaattaga
      361 caagccaatc agcactaatc ctgtccatgc tgttgatgtg gtgctacgac atctgccctc
      421 catgaaatat acgcctgtgg ggcgttcctt tttctcagct ccagaaggat atgaccaccc
      481 tctgggaggg ggcagggaag tttggtttgg attccatcag tctgttcggc ctgccatgtg
      541 gaaaatgatg cttaatattg atgtttctgc cactgccttc tacaaagcac aacctgtaat
      601 tcagttcatg tgtgaagttc ttgacattca taatattgat gagcagccaa gacctctgac
      661 tgattctcat cgggtaaaat tcaccaaaga gataaaaggt ctgaaggttg aagtgactca
      721 ttgtggaaca atgagacgga aataccgtgt ttgtaatgta acaagaaggc ctgccagtca
      781 tcaaaccttt cctttacagt tagaaaatgg ccaaactgtg gagagaacag tagcacagta
      841 tttcagagaa aaatatactc ttcagctgaa gtacccacac cttccctgtc tgcaagtggg
      901 gcaggagcag aaacatacct atctgccact agaagtctgt aatattgtgg cagggcaacg
      961 atgtatcaag aagctaacgg acaatcaaac ctccactatg atcaaagcaa cagcaagatc
     1021 tgcaccagat agacaagagg aaattagcag attggtaaga agtgcaaatt atgaaacaga
     1081 tccatttgtt caggagtttc aatttaaagt tcgggatgaa atggcccatg taaccggacg
     1141 cgtacttcca gcacctatgc tccagtatgg tggccggaat cggacagtag caacaccaag
     1201 ccacggagta tgggacatgc gagggaaaca gttccacaca ggagttgaaa tcaaaatgtg
     1261 ggctatagct tgttttgcca cacagaggca gtgcagagaa gaaatattga agggtttcac
     1321 ggaccagctg cgtaagattt ctaaagatgc agggatgccc atccagggcc agccttgctt
     1381 ctgcaaatac gcgcaggggg cagacagcgt ggagcccatg ttccggcatc tcaagaacac
     1441 gtactctggg ctacagctca ttattgtcat cctgccaggg aagacaccag tgtatgcgga
     1501 ggtgaaacgt gttggagata cacttttggg tatggctaca cagtgtgttc aagtcaagaa
     1561 tgtaataaaa acatcccctc aaactctctc aaacctgtgc ctaaagataa atgttaaact
     1621 tggagggatc aataatattc ttgtacctca tcaaagacct tctgtgttcc agcaaccagt
     1681 gatctttttg ggagcagatg tcactcatcc accagctggt gatgggaaga agccttctat
     1741 tgctgctgtt gtaggtagta tggatgccca cccaagcaga tactgtgcta cagtaagagt
     1801 tcagagaccc cgacaggaga tcatccagga ccttgcctcc atggtccgag aacttctcat
     1861 tcagttttat aagtcaactc ggttcaaacc tactcgtatc atcttttatc gggatggtgt
     1921 ttcagagggg cagtttaggc aggtattata ttatgaacta ctagcaattc gagaagcctg
     1981 catcagtttg gagaaagact atcaacctgg aataacttac attgtagttc agaagagaca
     2041 tcacactcga ttattttgtg ctgataggac tgaaagggtc ggaagaagtg gcaatatccc
     2101 agctggaaca acagttgata cagacattac acacccatat gagtttgatt tttacctctg
     2161 tagccatgct ggaatacagg gtaccagccg tccttcacac tatcatgttt tatgggatga
     2221 taactgcttt actgcagatg aacttcaact gctaacttac cagctctgcc acacttacgt
     2281 gcgctgcaca cgatctgttt ctatacctgc accagcgtat tatgctcacc tggtagcatt
     2341 tagagccaga tatcatcttg tggacaaaga acatgacagt gctgaaggaa gtcacgtttc
     2401 aggacagagc aatggacgag atccacaggc tcttgccaag gctgtacaga ttcaccaaga
     2461 taccttacgc acaatgtact ttgcttaaaa agtctcagaa tattctctga gaggaagaac
     2521 tggaagatga atcaacatac aacttatgtt tccagtggag tcagctgagt ggggatgcct
     2581 ccagccatac agaaaccaac actgtgtggg ggccagggta tgatctttat gttgatacaa
     2641 ggaagattgt ttacttcatc aaggaacaca gcaccattat gcaatatgaa accagccaac
     2701 tgcttttttg tgcggtctcc tgtaggaagt atcgcgatca ttttgttttc actttcttgt
     2761 agtctaaccc ttttaatgcc tttacctcaa gttgcttggc agcacaactc tttgcaaaaa
     2821 aaaaaagtaa agaaaaagta aatgatggtt ttttaaaaaa cacacctata tgaataatca
     2881 aagtgattgt tcacaattat gtgtgcaaaa aatgtgcatt catgtattct tgtaaaagtt
     2941 atctgtatat tttacttata tacatgcata ctgcatatgc atatatatct gtatctatac
     3001 tgataataga tatatatgta tctctgtata tattttatag ttcattccat tggggaactt
     3061 tctttccctt ttattatcct cccaccacca ctatgatttc tctctctacc gcccttgcct
     3121 tcatcaccta catttgtttt tccctgatgc taccagtaac attcagatgt tcatgtatct
     3181 ggttcatttg aatataaagc atggcaaact agatttttat tttgcacgcc ctactcctgt
     3241 cttgtctcat acataattct gagtcctcaa ctcttggtat tgctttctta aactatatat
     3301 atatatatat atatatatat atatatatac acacacacat atatatataa aaaatatgtt
     3361 tttgtgagag tgaatgtctg ccccctcctg ctctcaactt acatttgcca tttgtgcaat
     3421 gtgtacataa gcagtagcaa cccaaactat tctttttctt tagtgagttt gttaaagctg
     3481 ctataaatat attaaaaaaa aaaaacacaa ctttgtcaga agttgtaact ctctatataa
     3541 gtgatatgta ttctaaagtc ttctgtttct atgtgttata catggaaatc ccttaaaact
     3601 tttataaagg gtaaatattt taaatgattg gaactgtgta gggttgaggc ctctgaaatt
     3661 gggtggagag aagggattgt ggagggtttt ttgggttttt ttttactagt ttatttgctg
     3721 cctctcatac cttaatgtga ttttcatata tatatatttt tatatatatg tgtgttgtat
     3781 atatataaac atatatgtat gtgttttgaa gtatagcttc cttttctttt atatttatta
     3841 gaatagtgct ttaataatta tagaatcata ttggcaacat cttttataga aatataatca
     3901 tgtttatttt aagaactgac aacttgtttt tgctctcttt tagtgcaata agcagtttta
     3961 aaagaaagct gtgtctgttt gacatcttta ccacagatag tgggagaaac aggcacctcc
     4021 ataattttaa aagggcaaag tatatagcct taatttcaga aggaaagttt tgtaattttc
     4081 aagtttaaag catgtcttat aaaaatcata atgaaaatga aggaagttaa atttcctaaa
     4141 tgagtattga ccttgaatat tagaaataaa gttgaagaac tttgatttaa gtaatgacag
     4201 cgactagctt tagatttaga agatatttaa attctttgaa aatagatcat gtttattgaa
     4261 aaatcatact ggtaaggtgc ccattttcac ttactaacat gagtcaggaa aatataaaat
     4321 gatattttaa aaactttttt tgctaattca tcaccagtgt aactttcctt ttaaaattag
     4381 ggtgatggtg acaaaggaag ttaggacttt gagcatttga aatgagttaa atcactgaaa
     4441 tattgaaaaa agttttgcaa aacttttgtt ttattgactt cactttaaga tattaaaaaa
     4501 tactataaag ctgtcaaaac caagtttatc agtaaccttg gattcagggg agctttgcac
     4561 tttgtaactc atgaaaatag cattttaatt tttttttttt tttttttgca ctggttcaga
     4621 gtatagatat tacagattgt ttccagtggg cattgttgtt aacctttcag aattccatct
     4681 gcacatgaaa acaaatggat tagctcttta gttctctctt acctataatc cacacttatt
     4741 gccaatttac tgtattttga gcctaaaatc tgagcccata tcctccaaca ggtatgaaat
     4801 cttttgtccc tctgccagaa aactaagaaa gtactgtatt ttgtatgttt attatattga
     4861 agtgtctgaa atgcaattta caacactgtt ttaaagctct ttacataagg taatgtttgt
     4921 gtagtgtata catttttctc ccaaccctcc cccctcctcc aaaaaatttc tataaagagt
     4981 gtattttttt tacattgaaa tttcactgaa tataggcaag agcataggca agagaagaaa
     5041 atagtatatc ctaggtggta aaaacctgat ggcgtatgtt tgctcagtat gagtaaaaca
     5101 tcttccttta tcagtgggag ctgtacagat tgacgtggaa aacgttagag cccagggaag
     5161 aactgtagat aacctttccc tatttacctg ctttacctaa ttttcagtca cttaatctca
     5221 catgtgctaa agtaaagcct ataatttaaa actatttaga aggactttta cagaggaaaa
     5281 aaattttttt taatataaag ctttacattt gaagtgagtt ctttttaggg tgctcttaga
     5341 gtttcaacat tgctagttta aagttggtta acttgaaaga atatgtatag tatattctat
     5401 tttgcttact aacaaattgg tatatcaaac tcaattataa gaaactttgt gcttagaact
     5461 ttaaggtaaa tactaagtgg caaatatttt ttgaaatttg tttcgttatt atacttctgg
     5521 cgtagaattg ctgatctttt tttatttaaa aaaaaaaaaa aaggttgttt tgagtttaat
     5581 ggtcatgaaa ctcaacagtg acctttctgt tcctgccctt gctcactaac tatacagtga
     5641 atgctaaatt tctgtctgct gttttctgtg atataagagt gactttaaaa tgtcagtccg
     5701 agcaactggt ataatagatt ttcatgtgaa gcagaattgg gagtttaatg tatattctgg
     5761 atggcaaatg tgtaaagtgc tgatacatgt tttatattac agtatcacgt tactggcatt
     5821 gaggaccatg catttataat accgtagctg ctatatttat ttaatgaagt agagtctgac
     5881 agttactgca cttaacagta aggaaatgag caggattcaa ggctagtgtt agactttttt
     5941 ttttttccta aataagattt aagaacatga aatatcaagg taacaaaggg tgctgccaat
     6001 ttagtttcaa tttaatatca ggatactctt tctttgtttt agaaatgtgg atttttactt
     6061 tagcagtttt ggaaaagggt acctcagcct cctcagtact ggtttttagc atatttttca
     6121 caggagtaca ggtgcccttt atttttttct taatatttac ctttaaacaa gtttctcaga
     6181 aaaagtactc tgtagaaatc ttcctgtttg taacctatta atttatttat cttcctacaa
     6241 gagagtctag gtgggattct agtaggaatg tactgggtgt tttagaaggc acttgataaa
     6301 gattcatctc tactttctag catggagact tctagccctc taaacaccta tactggtttt
     6361 ccaaactagg ttctctgatg acccaccact gcctaaagtt tacttatata ttctctaatg
     6421 gattttagta tgacagaccc catgacaggc ttagtcatga cagacttaaa agtaagacta
     6481 aggagataga agctgagttg ccattcagta aaaacggctg gctgaggatc tcaacgttta
     6541 aggaaaaggt gaacactcag agtgccagta atcagtctga aggatctatt attgatggat
     6601 tatagaccag gaattagaga ctcttattca aggaatttgg tgggtgtttg attcagaggc
     6661 caacatgaat ttgccatggg tggtgatttt tatgaaatct gtgaagctag ccacttggat
     6721 tcagctagaa tattttgtag tcttactgtt aaaacttgat agtgatgttt tgccaagaag
     6781 cttaactgac agctcgggat aaattttatt cagtatcatt aagcctgggt taaatattta
     6841 tttaactcat cctcttagat gttctcctac tgaatagttt ttaaagacaa gttgccccta
     6901 acagtaactt gctacttaaa ttatctttta tgagttatca gtcaagctgc aaaaggacac
     6961 cattgaactg gcatctttat tttggctttt ttaatccttt tcattctttt tgagaattca
     7021 tggatgtgtt aaagcttcaa taataatacc tgggagactt tatcaagtga ggcctttgtg
     7081 agtggcggta taaccctgac tctaaagtct gtctttattt tcctttttcc ctctcatttg
     7141 atcatataaa gcactttgtg attctacagg agtcgaaaaa caagccaaga ataatgtgta
     7201 aaatcagtac atagatgtga aagtcagaat tttctccaaa aaatcttttt taaaaaattt
     7261 cctgcttata ctaagaacat ttttgatcga tggcaatatt ggaaatgatg ctgtgattag
     7321 tgaaacctaa actgactccc aggaagaaaa attcagtctc cctctctccc tctctctctc
     7381 tctctctctg tgtgtgtgtg tgtgtgtata tatatatata tatatatata tatatatata
     7441 tatatagcct caaagggaaa aatattttta actttttcct acttttaaaa gtggtacact
     7501 tcagtttata attttccatg ttggtcaaaa tcatttcttt taactaaggt ataatggtca
     7561 agacttatgc taatattatc tactgctagt tcaattttat ttttctttac ccatcaaaga
     7621 tagtgctcta tatttttaca tcgttgtaag aatcttttgc tcttaaagta cggaagttaa
     7681 agattttaat ttgatttaaa gatagaagtt taataaattt catatggagg gttgagattt
     7741 accaatgaga agccctatta aaatatcatg tagccaacag tgtgacaaaa ttaagatgct
     7801 atcaaatcat ctgtctggcc attggtctcc cttccttttt gaaatcaatg tcttaggtaa
     7861 ccaaactcta atgttgtgtc catgttagcg tgtcagtaaa gcagagatgt tcttcagggt
     7921 agacactgaa ttaaattttt aaatcatttt ttaaagcaag gcggttctta gaaagtgcct
     7981 tttcagaaga tggtgctgta gatttttatt tttcaaatag catgaggcta aaaatttgaa
     8041 agataaatta ttttagaatt ccaagagtat gaccgtttca tataaataat gttatttgtt
     8101 gttctgaatc tggtccaagg gaaccaagta aagcttttat tcagtaaagt atctaagtaa
     8161 atgctcacca aatatatttt gtaagtttaa gaacacagtt tttaacagaa ttaaccgttt
     8221 cagttctcag ctgtgttgca ggtattatat aaggcataca aaacagcaag tttgcttaac
     8281 tttttaacaa gagtatggat atagtagtaa gtgcccgaca gcaaaggtaa cttgccagaa
     8341 attatgtcat aggctacgtt ttccccccca gcatattgac ccttttgtaa atatctactg
     8401 gcagcctctt ctaattaatc tttattaaag aagactgctt ataaagatgg agccaagtca
     8461 tcatggaaat cagtgtaaga ggagaagtaa aatgattctc tatctttagg gaaatttttt
     8521 ctttttcagg cagcaagaaa tattctaaat gtttccctct tttttctagc ataggtgaaa
     8581 agtgatgaca gtgcatctat atgatcaatt aattagacat agaacaggta aaattgggct
     8641 ttggaggaaa taagtaagag ggaggataat agcaggacta ttcatactgg ttggtaattt
     8701 atctaccaga aagcgatttt cccctgaact aggaagtagt aaacagcagt aaatgatcac
     8761 ctaaccagtt cttgcttgtg aatttggtga gcactcttcc agaaaataga cttaaaaaca
     8821 cacaaaaaaa cacacctcag taaccttgta tgctgcatta tgtaataatg atagtaaact
     8881 tatattgatt gtttggagtg tactatgtct gtctgcaaat atacatgcac attaaactct
     8941 ttcatttttt ataatgtca
//
LOCUS       XM_032650025            9439 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC catalytic component 3
            (AGO3), transcript variant X3, mRNA.
ACCESSION   XM_032650025
VERSION     XM_032650025.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9439
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9439
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 11 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:116762692"
     CDS             527..2968
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X2"
                     /protein_id="XP_032505916.1"
                     /db_xref="GeneID:116762692"
                     /translation="MMESKDLVPEYRKWWLREVVDSMVQHFKVTIFGDRRPVYDGKRS
                     LYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPL
                     ELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSV
                     RPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKG
                     LKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKY
                     PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEIS
                     RLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMR
                     GKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQ
                     GADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIK
                     TSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIA
                     AVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDG
                     VSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSG
                     NIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQL
                     CHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAK
                     AVQIHQDTLRTMYFA"
     misc_feature    602..886
                     /gene="AGO3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    914..1066
                     /gene="AGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    1067..1429
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1223..1225,1268..1270,1310..1312,1322..1324,
                     1376..1378,1397..1399,1403..1405)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1562..2839
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1973..1975,1985..1987,2021..2032,2039..2041,
                     2063..2065,2072..2074,2084..2086,2096..2098)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2177..2179,2183..2185,2393..2395,2807..2809)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 ggcccccggg gaggtcggcg gcggcgccgc agtcgtggag gggcactggg atcgtaggcg
       61 gccgcgggcg acgcaagttc cgcacggagc ccgtctcttc tcgcctcacg cttcttcctc
      121 tctcctagtt gcgcgctgcc tcccgacggc cgctcttcct gacgagagct ttcggagtgc
      181 ggttgctgag gagaagccgt caccaccccg cctcggggcc gagtgagggt tcctgtcgcg
      241 ccgcgtcgcc ccctgcgccg cctccttgcc ctcagtggcg ggcgcccttc tcgctggaag
      301 cattcccccc agctccatga atggaaatcg gctccgcagg acccgttggg gcccagcccc
      361 tactcatggt gcccagaaga cctggctatg gcaccatggg caaacccatt aagttgctgg
      421 ctaactgttt tcaagttgaa attccaaaga ttgatgtcta cctctatgag gtagatatta
      481 aaccagacaa gtgtcctagg agagtgaaca gtctgtgcac cagagcatga tggagtcaaa
      541 agacttggta ccagaatata ggaagtggtg gttgagggag gtggttgact caatggttca
      601 gcattttaaa gtaactatat ttggggaccg tagaccagtt tatgatggaa aaagaagcct
      661 ttacacagcc aatccacttc ctgtggcaac tacaggggta gatttagatg ttactttacc
      721 tggggaaggt ggaaaagatc gacctttcaa ggtgtcaatc aaatttgtct ctcgggtgag
      781 ttggcaccta ctacatgaag tactgacagg acggaccttg ccagagccac tggaattaga
      841 caagccaatc agcactaatc ctgtccatgc tgttgatgtg gtgctacgac atctgccctc
      901 catgaaatat acgcctgtgg ggcgttcctt tttctcagct ccagaaggat atgaccaccc
      961 tctgggaggg ggcagggaag tttggtttgg attccatcag tctgttcggc ctgccatgtg
     1021 gaaaatgatg cttaatattg atgtttctgc cactgccttc tacaaagcac aacctgtaat
     1081 tcagttcatg tgtgaagttc ttgacattca taatattgat gagcagccaa gacctctgac
     1141 tgattctcat cgggtaaaat tcaccaaaga gataaaaggt ctgaaggttg aagtgactca
     1201 ttgtggaaca atgagacgga aataccgtgt ttgtaatgta acaagaaggc ctgccagtca
     1261 tcaaaccttt cctttacagt tagaaaatgg ccaaactgtg gagagaacag tagcacagta
     1321 tttcagagaa aaatatactc ttcagctgaa gtacccacac cttccctgtc tgcaagtggg
     1381 gcaggagcag aaacatacct atctgccact agaagtctgt aatattgtgg cagggcaacg
     1441 atgtatcaag aagctaacgg acaatcaaac ctccactatg atcaaagcaa cagcaagatc
     1501 tgcaccagat agacaagagg aaattagcag attggtaaga agtgcaaatt atgaaacaga
     1561 tccatttgtt caggagtttc aatttaaagt tcgggatgaa atggcccatg taaccggacg
     1621 cgtacttcca gcacctatgc tccagtatgg tggccggaat cggacagtag caacaccaag
     1681 ccacggagta tgggacatgc gagggaaaca gttccacaca ggagttgaaa tcaaaatgtg
     1741 ggctatagct tgttttgcca cacagaggca gtgcagagaa gaaatattga agggtttcac
     1801 ggaccagctg cgtaagattt ctaaagatgc agggatgccc atccagggcc agccttgctt
     1861 ctgcaaatac gcgcaggggg cagacagcgt ggagcccatg ttccggcatc tcaagaacac
     1921 gtactctggg ctacagctca ttattgtcat cctgccaggg aagacaccag tgtatgcgga
     1981 ggtgaaacgt gttggagata cacttttggg tatggctaca cagtgtgttc aagtcaagaa
     2041 tgtaataaaa acatcccctc aaactctctc aaacctgtgc ctaaagataa atgttaaact
     2101 tggagggatc aataatattc ttgtacctca tcaaagacct tctgtgttcc agcaaccagt
     2161 gatctttttg ggagcagatg tcactcatcc accagctggt gatgggaaga agccttctat
     2221 tgctgctgtt gtaggtagta tggatgccca cccaagcaga tactgtgcta cagtaagagt
     2281 tcagagaccc cgacaggaga tcatccagga ccttgcctcc atggtccgag aacttctcat
     2341 tcagttttat aagtcaactc ggttcaaacc tactcgtatc atcttttatc gggatggtgt
     2401 ttcagagggg cagtttaggc aggtattata ttatgaacta ctagcaattc gagaagcctg
     2461 catcagtttg gagaaagact atcaacctgg aataacttac attgtagttc agaagagaca
     2521 tcacactcga ttattttgtg ctgataggac tgaaagggtc ggaagaagtg gcaatatccc
     2581 agctggaaca acagttgata cagacattac acacccatat gagtttgatt tttacctctg
     2641 tagccatgct ggaatacagg gtaccagccg tccttcacac tatcatgttt tatgggatga
     2701 taactgcttt actgcagatg aacttcaact gctaacttac cagctctgcc acacttacgt
     2761 gcgctgcaca cgatctgttt ctatacctgc accagcgtat tatgctcacc tggtagcatt
     2821 tagagccaga tatcatcttg tggacaaaga acatgacagt gctgaaggaa gtcacgtttc
     2881 aggacagagc aatggacgag atccacaggc tcttgccaag gctgtacaga ttcaccaaga
     2941 taccttacgc acaatgtact ttgcttaaaa agtctcagaa tattctctga gaggaagaac
     3001 tggaagatga atcaacatac aacttatgtt tccagtggag tcagctgagt ggggatgcct
     3061 ccagccatac agaaaccaac actgtgtggg ggccagggta tgatctttat gttgatacaa
     3121 ggaagattgt ttacttcatc aaggaacaca gcaccattat gcaatatgaa accagccaac
     3181 tgcttttttg tgcggtctcc tgtaggaagt atcgcgatca ttttgttttc actttcttgt
     3241 agtctaaccc ttttaatgcc tttacctcaa gttgcttggc agcacaactc tttgcaaaaa
     3301 aaaaaagtaa agaaaaagta aatgatggtt ttttaaaaaa cacacctata tgaataatca
     3361 aagtgattgt tcacaattat gtgtgcaaaa aatgtgcatt catgtattct tgtaaaagtt
     3421 atctgtatat tttacttata tacatgcata ctgcatatgc atatatatct gtatctatac
     3481 tgataataga tatatatgta tctctgtata tattttatag ttcattccat tggggaactt
     3541 tctttccctt ttattatcct cccaccacca ctatgatttc tctctctacc gcccttgcct
     3601 tcatcaccta catttgtttt tccctgatgc taccagtaac attcagatgt tcatgtatct
     3661 ggttcatttg aatataaagc atggcaaact agatttttat tttgcacgcc ctactcctgt
     3721 cttgtctcat acataattct gagtcctcaa ctcttggtat tgctttctta aactatatat
     3781 atatatatat atatatatat atatatatac acacacacat atatatataa aaaatatgtt
     3841 tttgtgagag tgaatgtctg ccccctcctg ctctcaactt acatttgcca tttgtgcaat
     3901 gtgtacataa gcagtagcaa cccaaactat tctttttctt tagtgagttt gttaaagctg
     3961 ctataaatat attaaaaaaa aaaaacacaa ctttgtcaga agttgtaact ctctatataa
     4021 gtgatatgta ttctaaagtc ttctgtttct atgtgttata catggaaatc ccttaaaact
     4081 tttataaagg gtaaatattt taaatgattg gaactgtgta gggttgaggc ctctgaaatt
     4141 gggtggagag aagggattgt ggagggtttt ttgggttttt ttttactagt ttatttgctg
     4201 cctctcatac cttaatgtga ttttcatata tatatatttt tatatatatg tgtgttgtat
     4261 atatataaac atatatgtat gtgttttgaa gtatagcttc cttttctttt atatttatta
     4321 gaatagtgct ttaataatta tagaatcata ttggcaacat cttttataga aatataatca
     4381 tgtttatttt aagaactgac aacttgtttt tgctctcttt tagtgcaata agcagtttta
     4441 aaagaaagct gtgtctgttt gacatcttta ccacagatag tgggagaaac aggcacctcc
     4501 ataattttaa aagggcaaag tatatagcct taatttcaga aggaaagttt tgtaattttc
     4561 aagtttaaag catgtcttat aaaaatcata atgaaaatga aggaagttaa atttcctaaa
     4621 tgagtattga ccttgaatat tagaaataaa gttgaagaac tttgatttaa gtaatgacag
     4681 cgactagctt tagatttaga agatatttaa attctttgaa aatagatcat gtttattgaa
     4741 aaatcatact ggtaaggtgc ccattttcac ttactaacat gagtcaggaa aatataaaat
     4801 gatattttaa aaactttttt tgctaattca tcaccagtgt aactttcctt ttaaaattag
     4861 ggtgatggtg acaaaggaag ttaggacttt gagcatttga aatgagttaa atcactgaaa
     4921 tattgaaaaa agttttgcaa aacttttgtt ttattgactt cactttaaga tattaaaaaa
     4981 tactataaag ctgtcaaaac caagtttatc agtaaccttg gattcagggg agctttgcac
     5041 tttgtaactc atgaaaatag cattttaatt tttttttttt tttttttgca ctggttcaga
     5101 gtatagatat tacagattgt ttccagtggg cattgttgtt aacctttcag aattccatct
     5161 gcacatgaaa acaaatggat tagctcttta gttctctctt acctataatc cacacttatt
     5221 gccaatttac tgtattttga gcctaaaatc tgagcccata tcctccaaca ggtatgaaat
     5281 cttttgtccc tctgccagaa aactaagaaa gtactgtatt ttgtatgttt attatattga
     5341 agtgtctgaa atgcaattta caacactgtt ttaaagctct ttacataagg taatgtttgt
     5401 gtagtgtata catttttctc ccaaccctcc cccctcctcc aaaaaatttc tataaagagt
     5461 gtattttttt tacattgaaa tttcactgaa tataggcaag agcataggca agagaagaaa
     5521 atagtatatc ctaggtggta aaaacctgat ggcgtatgtt tgctcagtat gagtaaaaca
     5581 tcttccttta tcagtgggag ctgtacagat tgacgtggaa aacgttagag cccagggaag
     5641 aactgtagat aacctttccc tatttacctg ctttacctaa ttttcagtca cttaatctca
     5701 catgtgctaa agtaaagcct ataatttaaa actatttaga aggactttta cagaggaaaa
     5761 aaattttttt taatataaag ctttacattt gaagtgagtt ctttttaggg tgctcttaga
     5821 gtttcaacat tgctagttta aagttggtta acttgaaaga atatgtatag tatattctat
     5881 tttgcttact aacaaattgg tatatcaaac tcaattataa gaaactttgt gcttagaact
     5941 ttaaggtaaa tactaagtgg caaatatttt ttgaaatttg tttcgttatt atacttctgg
     6001 cgtagaattg ctgatctttt tttatttaaa aaaaaaaaaa aaggttgttt tgagtttaat
     6061 ggtcatgaaa ctcaacagtg acctttctgt tcctgccctt gctcactaac tatacagtga
     6121 atgctaaatt tctgtctgct gttttctgtg atataagagt gactttaaaa tgtcagtccg
     6181 agcaactggt ataatagatt ttcatgtgaa gcagaattgg gagtttaatg tatattctgg
     6241 atggcaaatg tgtaaagtgc tgatacatgt tttatattac agtatcacgt tactggcatt
     6301 gaggaccatg catttataat accgtagctg ctatatttat ttaatgaagt agagtctgac
     6361 agttactgca cttaacagta aggaaatgag caggattcaa ggctagtgtt agactttttt
     6421 ttttttccta aataagattt aagaacatga aatatcaagg taacaaaggg tgctgccaat
     6481 ttagtttcaa tttaatatca ggatactctt tctttgtttt agaaatgtgg atttttactt
     6541 tagcagtttt ggaaaagggt acctcagcct cctcagtact ggtttttagc atatttttca
     6601 caggagtaca ggtgcccttt atttttttct taatatttac ctttaaacaa gtttctcaga
     6661 aaaagtactc tgtagaaatc ttcctgtttg taacctatta atttatttat cttcctacaa
     6721 gagagtctag gtgggattct agtaggaatg tactgggtgt tttagaaggc acttgataaa
     6781 gattcatctc tactttctag catggagact tctagccctc taaacaccta tactggtttt
     6841 ccaaactagg ttctctgatg acccaccact gcctaaagtt tacttatata ttctctaatg
     6901 gattttagta tgacagaccc catgacaggc ttagtcatga cagacttaaa agtaagacta
     6961 aggagataga agctgagttg ccattcagta aaaacggctg gctgaggatc tcaacgttta
     7021 aggaaaaggt gaacactcag agtgccagta atcagtctga aggatctatt attgatggat
     7081 tatagaccag gaattagaga ctcttattca aggaatttgg tgggtgtttg attcagaggc
     7141 caacatgaat ttgccatggg tggtgatttt tatgaaatct gtgaagctag ccacttggat
     7201 tcagctagaa tattttgtag tcttactgtt aaaacttgat agtgatgttt tgccaagaag
     7261 cttaactgac agctcgggat aaattttatt cagtatcatt aagcctgggt taaatattta
     7321 tttaactcat cctcttagat gttctcctac tgaatagttt ttaaagacaa gttgccccta
     7381 acagtaactt gctacttaaa ttatctttta tgagttatca gtcaagctgc aaaaggacac
     7441 cattgaactg gcatctttat tttggctttt ttaatccttt tcattctttt tgagaattca
     7501 tggatgtgtt aaagcttcaa taataatacc tgggagactt tatcaagtga ggcctttgtg
     7561 agtggcggta taaccctgac tctaaagtct gtctttattt tcctttttcc ctctcatttg
     7621 atcatataaa gcactttgtg attctacagg agtcgaaaaa caagccaaga ataatgtgta
     7681 aaatcagtac atagatgtga aagtcagaat tttctccaaa aaatcttttt taaaaaattt
     7741 cctgcttata ctaagaacat ttttgatcga tggcaatatt ggaaatgatg ctgtgattag
     7801 tgaaacctaa actgactccc aggaagaaaa attcagtctc cctctctccc tctctctctc
     7861 tctctctctg tgtgtgtgtg tgtgtgtata tatatatata tatatatata tatatatata
     7921 tatatagcct caaagggaaa aatattttta actttttcct acttttaaaa gtggtacact
     7981 tcagtttata attttccatg ttggtcaaaa tcatttcttt taactaaggt ataatggtca
     8041 agacttatgc taatattatc tactgctagt tcaattttat ttttctttac ccatcaaaga
     8101 tagtgctcta tatttttaca tcgttgtaag aatcttttgc tcttaaagta cggaagttaa
     8161 agattttaat ttgatttaaa gatagaagtt taataaattt catatggagg gttgagattt
     8221 accaatgaga agccctatta aaatatcatg tagccaacag tgtgacaaaa ttaagatgct
     8281 atcaaatcat ctgtctggcc attggtctcc cttccttttt gaaatcaatg tcttaggtaa
     8341 ccaaactcta atgttgtgtc catgttagcg tgtcagtaaa gcagagatgt tcttcagggt
     8401 agacactgaa ttaaattttt aaatcatttt ttaaagcaag gcggttctta gaaagtgcct
     8461 tttcagaaga tggtgctgta gatttttatt tttcaaatag catgaggcta aaaatttgaa
     8521 agataaatta ttttagaatt ccaagagtat gaccgtttca tataaataat gttatttgtt
     8581 gttctgaatc tggtccaagg gaaccaagta aagcttttat tcagtaaagt atctaagtaa
     8641 atgctcacca aatatatttt gtaagtttaa gaacacagtt tttaacagaa ttaaccgttt
     8701 cagttctcag ctgtgttgca ggtattatat aaggcataca aaacagcaag tttgcttaac
     8761 tttttaacaa gagtatggat atagtagtaa gtgcccgaca gcaaaggtaa cttgccagaa
     8821 attatgtcat aggctacgtt ttccccccca gcatattgac ccttttgtaa atatctactg
     8881 gcagcctctt ctaattaatc tttattaaag aagactgctt ataaagatgg agccaagtca
     8941 tcatggaaat cagtgtaaga ggagaagtaa aatgattctc tatctttagg gaaatttttt
     9001 ctttttcagg cagcaagaaa tattctaaat gtttccctct tttttctagc ataggtgaaa
     9061 agtgatgaca gtgcatctat atgatcaatt aattagacat agaacaggta aaattgggct
     9121 ttggaggaaa taagtaagag ggaggataat agcaggacta ttcatactgg ttggtaattt
     9181 atctaccaga aagcgatttt cccctgaact aggaagtagt aaacagcagt aaatgatcac
     9241 ctaaccagtt cttgcttgtg aatttggtga gcactcttcc agaaaataga cttaaaaaca
     9301 cacaaaaaaa cacacctcag taaccttgta tgctgcatta tgtaataatg atagtaaact
     9361 tatattgatt gtttggagtg tactatgtct gtctgcaaat atacatgcac attaaactct
     9421 ttcatttttt ataatgtca
//
LOCUS       XM_032650035            9546 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC catalytic component 3
            (AGO3), transcript variant X4, mRNA.
ACCESSION   XM_032650035
VERSION     XM_032650035.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9546
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9546
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762692"
     CDS             1195..3075
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X3"
                     /protein_id="XP_032505926.1"
                     /db_xref="GeneID:116762692"
                     /translation="MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRR
                     KYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQK
                     HTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPF
                     VQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMW
                     AIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLK
                     NTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKI
                     NVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRY
                     CATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYE
                     LLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDIT
                     HPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSI
                     PAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMY
                     FA"
     misc_feature    1195..1536
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1330..1332,1375..1377,1417..1419,1429..1431,
                     1483..1485,1504..1506,1510..1512)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1669..2946
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2080..2082,2092..2094,2128..2139,2146..2148,
                     2170..2172,2179..2181,2191..2193,2203..2205)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2284..2286,2290..2292,2500..2502,2914..2916)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 ggaggtcggc ggcggcgccg cagtcgtgga ggggcactgg gatcgtaggc ggccgcgggc
       61 gacgcaagtt ccgcacggag cccgtctctt ctcgcctcac gcttcttcct ctctcctagt
      121 tgcgcgctgc ctcccgacgg ccgctcttcc tgacgagagc tttcggagtg cggttgctga
      181 ggagaagccg tcaccacccc gcctcggggc cgagtgaggg ttcctgtcgc gccgcgtcgc
      241 cccctgcgcc gcctccttgc cctcagtggc gggcgccctt ctcgctggaa gcattccccc
      301 cagctccatg aatggaaatc ggctccgcag gacccgttgg ggcccagccc ctactcatgg
      361 tgcccagaag acctggctat ggcaccatgg gcaaacccat taagttgctg gctaactgtt
      421 ttcaagttga aattccaaag attgatgtct acctctatga ggtagatatt aaaccagaca
      481 agtgtcctag gagagtgaac agggaggtgg ttgactcaat ggttcagcat tttaaagtaa
      541 ctatatttgg ggaccgtaga ccagtttatg atggaaaaag aagcctttac acagccaatc
      601 cacttcctgt ggcaactaca ggggtagatt tagatgttac tttacctggg gaaggtggaa
      661 aagatcgacc tttcaaggtg tcaatcaaat ttgtctctcg ggtgagttgg cacctactac
      721 atgaagtact gacaggacgg accttgccag agccactgga attagacaag ccaatcagca
      781 ctaatcctgt ccatgctgtt gatgtggtgc tacgacatct gccctccatg aaatatacgc
      841 ctgtggggcg ttcctttttc tcagctccag aaggatatga ccaccctctg ggagggggca
      901 gggaagtttg gtttggattc catcagtctg ttcggcctgc catgtggaaa atgatgctta
      961 atattgatga aagagacctc tggcagcagt gtggagaata gatagaggag aaaaaaacta
     1021 atctgagaag ccagttagga ggctttttca atcactagtt caggtttcag tctacatgtt
     1081 acttccttga gaagcagtat ttgacaccct tcttgccccc catccagcca ttcccccaag
     1141 tctgagttag tttctgccac tgccttctac aaagcacaac ctgtaattca gttcatgtgt
     1201 gaagttcttg acattcataa tattgatgag cagccaagac ctctgactga ttctcatcgg
     1261 gtaaaattca ccaaagagat aaaaggtctg aaggttgaag tgactcattg tggaacaatg
     1321 agacggaaat accgtgtttg taatgtaaca agaaggcctg ccagtcatca aacctttcct
     1381 ttacagttag aaaatggcca aactgtggag agaacagtag cacagtattt cagagaaaaa
     1441 tatactcttc agctgaagta cccacacctt ccctgtctgc aagtggggca ggagcagaaa
     1501 catacctatc tgccactaga agtctgtaat attgtggcag ggcaacgatg tatcaagaag
     1561 ctaacggaca atcaaacctc cactatgatc aaagcaacag caagatctgc accagataga
     1621 caagaggaaa ttagcagatt ggtaagaagt gcaaattatg aaacagatcc atttgttcag
     1681 gagtttcaat ttaaagttcg ggatgaaatg gcccatgtaa ccggacgcgt acttccagca
     1741 cctatgctcc agtatggtgg ccggaatcgg acagtagcaa caccaagcca cggagtatgg
     1801 gacatgcgag ggaaacagtt ccacacagga gttgaaatca aaatgtgggc tatagcttgt
     1861 tttgccacac agaggcagtg cagagaagaa atattgaagg gtttcacgga ccagctgcgt
     1921 aagatttcta aagatgcagg gatgcccatc cagggccagc cttgcttctg caaatacgcg
     1981 cagggggcag acagcgtgga gcccatgttc cggcatctca agaacacgta ctctgggcta
     2041 cagctcatta ttgtcatcct gccagggaag acaccagtgt atgcggaggt gaaacgtgtt
     2101 ggagatacac ttttgggtat ggctacacag tgtgttcaag tcaagaatgt aataaaaaca
     2161 tcccctcaaa ctctctcaaa cctgtgccta aagataaatg ttaaacttgg agggatcaat
     2221 aatattcttg tacctcatca aagaccttct gtgttccagc aaccagtgat ctttttggga
     2281 gcagatgtca ctcatccacc agctggtgat gggaagaagc cttctattgc tgctgttgta
     2341 ggtagtatgg atgcccaccc aagcagatac tgtgctacag taagagttca gagaccccga
     2401 caggagatca tccaggacct tgcctccatg gtccgagaac ttctcattca gttttataag
     2461 tcaactcggt tcaaacctac tcgtatcatc ttttatcggg atggtgtttc agaggggcag
     2521 tttaggcagg tattatatta tgaactacta gcaattcgag aagcctgcat cagtttggag
     2581 aaagactatc aacctggaat aacttacatt gtagttcaga agagacatca cactcgatta
     2641 ttttgtgctg ataggactga aagggtcgga agaagtggca atatcccagc tggaacaaca
     2701 gttgatacag acattacaca cccatatgag tttgattttt acctctgtag ccatgctgga
     2761 atacagggta ccagccgtcc ttcacactat catgttttat gggatgataa ctgctttact
     2821 gcagatgaac ttcaactgct aacttaccag ctctgccaca cttacgtgcg ctgcacacga
     2881 tctgtttcta tacctgcacc agcgtattat gctcacctgg tagcatttag agccagatat
     2941 catcttgtgg acaaagaaca tgacagtgct gaaggaagtc acgtttcagg acagagcaat
     3001 ggacgagatc cacaggctct tgccaaggct gtacagattc accaagatac cttacgcaca
     3061 atgtactttg cttaaaaagt ctcagaatat tctctgagag gaagaactgg aagatgaatc
     3121 aacatacaac ttatgtttcc agtggagtca gctgagtggg gatgcctcca gccatacaga
     3181 aaccaacact gtgtgggggc cagggtatga tctttatgtt gatacaagga agattgttta
     3241 cttcatcaag gaacacagca ccattatgca atatgaaacc agccaactgc ttttttgtgc
     3301 ggtctcctgt aggaagtatc gcgatcattt tgttttcact ttcttgtagt ctaacccttt
     3361 taatgccttt acctcaagtt gcttggcagc acaactcttt gcaaaaaaaa aaagtaaaga
     3421 aaaagtaaat gatggttttt taaaaaacac acctatatga ataatcaaag tgattgttca
     3481 caattatgtg tgcaaaaaat gtgcattcat gtattcttgt aaaagttatc tgtatatttt
     3541 acttatatac atgcatactg catatgcata tatatctgta tctatactga taatagatat
     3601 atatgtatct ctgtatatat tttatagttc attccattgg ggaactttct ttccctttta
     3661 ttatcctccc accaccacta tgatttctct ctctaccgcc cttgccttca tcacctacat
     3721 ttgtttttcc ctgatgctac cagtaacatt cagatgttca tgtatctggt tcatttgaat
     3781 ataaagcatg gcaaactaga tttttatttt gcacgcccta ctcctgtctt gtctcataca
     3841 taattctgag tcctcaactc ttggtattgc tttcttaaac tatatatata tatatatata
     3901 tatatatata tatatacaca cacacatata tatataaaaa atatgttttt gtgagagtga
     3961 atgtctgccc cctcctgctc tcaacttaca tttgccattt gtgcaatgtg tacataagca
     4021 gtagcaaccc aaactattct ttttctttag tgagtttgtt aaagctgcta taaatatatt
     4081 aaaaaaaaaa aacacaactt tgtcagaagt tgtaactctc tatataagtg atatgtattc
     4141 taaagtcttc tgtttctatg tgttatacat ggaaatccct taaaactttt ataaagggta
     4201 aatattttaa atgattggaa ctgtgtaggg ttgaggcctc tgaaattggg tggagagaag
     4261 ggattgtgga gggttttttg ggtttttttt tactagttta tttgctgcct ctcatacctt
     4321 aatgtgattt tcatatatat atatttttat atatatgtgt gttgtatata tataaacata
     4381 tatgtatgtg ttttgaagta tagcttcctt ttcttttata tttattagaa tagtgcttta
     4441 ataattatag aatcatattg gcaacatctt ttatagaaat ataatcatgt ttattttaag
     4501 aactgacaac ttgtttttgc tctcttttag tgcaataagc agttttaaaa gaaagctgtg
     4561 tctgtttgac atctttacca cagatagtgg gagaaacagg cacctccata attttaaaag
     4621 ggcaaagtat atagccttaa tttcagaagg aaagttttgt aattttcaag tttaaagcat
     4681 gtcttataaa aatcataatg aaaatgaagg aagttaaatt tcctaaatga gtattgacct
     4741 tgaatattag aaataaagtt gaagaacttt gatttaagta atgacagcga ctagctttag
     4801 atttagaaga tatttaaatt ctttgaaaat agatcatgtt tattgaaaaa tcatactggt
     4861 aaggtgccca ttttcactta ctaacatgag tcaggaaaat ataaaatgat attttaaaaa
     4921 ctttttttgc taattcatca ccagtgtaac tttcctttta aaattagggt gatggtgaca
     4981 aaggaagtta ggactttgag catttgaaat gagttaaatc actgaaatat tgaaaaaagt
     5041 tttgcaaaac ttttgtttta ttgacttcac tttaagatat taaaaaatac tataaagctg
     5101 tcaaaaccaa gtttatcagt aaccttggat tcaggggagc tttgcacttt gtaactcatg
     5161 aaaatagcat tttaattttt tttttttttt ttttgcactg gttcagagta tagatattac
     5221 agattgtttc cagtgggcat tgttgttaac ctttcagaat tccatctgca catgaaaaca
     5281 aatggattag ctctttagtt ctctcttacc tataatccac acttattgcc aatttactgt
     5341 attttgagcc taaaatctga gcccatatcc tccaacaggt atgaaatctt ttgtccctct
     5401 gccagaaaac taagaaagta ctgtattttg tatgtttatt atattgaagt gtctgaaatg
     5461 caatttacaa cactgtttta aagctcttta cataaggtaa tgtttgtgta gtgtatacat
     5521 ttttctccca accctccccc ctcctccaaa aaatttctat aaagagtgta ttttttttac
     5581 attgaaattt cactgaatat aggcaagagc ataggcaaga gaagaaaata gtatatccta
     5641 ggtggtaaaa acctgatggc gtatgtttgc tcagtatgag taaaacatct tcctttatca
     5701 gtgggagctg tacagattga cgtggaaaac gttagagccc agggaagaac tgtagataac
     5761 ctttccctat ttacctgctt tacctaattt tcagtcactt aatctcacat gtgctaaagt
     5821 aaagcctata atttaaaact atttagaagg acttttacag aggaaaaaaa ttttttttaa
     5881 tataaagctt tacatttgaa gtgagttctt tttagggtgc tcttagagtt tcaacattgc
     5941 tagtttaaag ttggttaact tgaaagaata tgtatagtat attctatttt gcttactaac
     6001 aaattggtat atcaaactca attataagaa actttgtgct tagaacttta aggtaaatac
     6061 taagtggcaa atattttttg aaatttgttt cgttattata cttctggcgt agaattgctg
     6121 atcttttttt atttaaaaaa aaaaaaaaag gttgttttga gtttaatggt catgaaactc
     6181 aacagtgacc tttctgttcc tgcccttgct cactaactat acagtgaatg ctaaatttct
     6241 gtctgctgtt ttctgtgata taagagtgac tttaaaatgt cagtccgagc aactggtata
     6301 atagattttc atgtgaagca gaattgggag tttaatgtat attctggatg gcaaatgtgt
     6361 aaagtgctga tacatgtttt atattacagt atcacgttac tggcattgag gaccatgcat
     6421 ttataatacc gtagctgcta tatttattta atgaagtaga gtctgacagt tactgcactt
     6481 aacagtaagg aaatgagcag gattcaaggc tagtgttaga cttttttttt tttcctaaat
     6541 aagatttaag aacatgaaat atcaaggtaa caaagggtgc tgccaattta gtttcaattt
     6601 aatatcagga tactctttct ttgttttaga aatgtggatt tttactttag cagttttgga
     6661 aaagggtacc tcagcctcct cagtactggt ttttagcata tttttcacag gagtacaggt
     6721 gccctttatt tttttcttaa tatttacctt taaacaagtt tctcagaaaa agtactctgt
     6781 agaaatcttc ctgtttgtaa cctattaatt tatttatctt cctacaagag agtctaggtg
     6841 ggattctagt aggaatgtac tgggtgtttt agaaggcact tgataaagat tcatctctac
     6901 tttctagcat ggagacttct agccctctaa acacctatac tggttttcca aactaggttc
     6961 tctgatgacc caccactgcc taaagtttac ttatatattc tctaatggat tttagtatga
     7021 cagaccccat gacaggctta gtcatgacag acttaaaagt aagactaagg agatagaagc
     7081 tgagttgcca ttcagtaaaa acggctggct gaggatctca acgtttaagg aaaaggtgaa
     7141 cactcagagt gccagtaatc agtctgaagg atctattatt gatggattat agaccaggaa
     7201 ttagagactc ttattcaagg aatttggtgg gtgtttgatt cagaggccaa catgaatttg
     7261 ccatgggtgg tgatttttat gaaatctgtg aagctagcca cttggattca gctagaatat
     7321 tttgtagtct tactgttaaa acttgatagt gatgttttgc caagaagctt aactgacagc
     7381 tcgggataaa ttttattcag tatcattaag cctgggttaa atatttattt aactcatcct
     7441 cttagatgtt ctcctactga atagttttta aagacaagtt gcccctaaca gtaacttgct
     7501 acttaaatta tcttttatga gttatcagtc aagctgcaaa aggacaccat tgaactggca
     7561 tctttatttt ggctttttta atccttttca ttctttttga gaattcatgg atgtgttaaa
     7621 gcttcaataa taatacctgg gagactttat caagtgaggc ctttgtgagt ggcggtataa
     7681 ccctgactct aaagtctgtc tttattttcc tttttccctc tcatttgatc atataaagca
     7741 ctttgtgatt ctacaggagt cgaaaaacaa gccaagaata atgtgtaaaa tcagtacata
     7801 gatgtgaaag tcagaatttt ctccaaaaaa tcttttttaa aaaatttcct gcttatacta
     7861 agaacatttt tgatcgatgg caatattgga aatgatgctg tgattagtga aacctaaact
     7921 gactcccagg aagaaaaatt cagtctccct ctctccctct ctctctctct ctctctgtgt
     7981 gtgtgtgtgt gtgtatatat atatatatat atatatatat atatatatat atagcctcaa
     8041 agggaaaaat atttttaact ttttcctact tttaaaagtg gtacacttca gtttataatt
     8101 ttccatgttg gtcaaaatca tttcttttaa ctaaggtata atggtcaaga cttatgctaa
     8161 tattatctac tgctagttca attttatttt tctttaccca tcaaagatag tgctctatat
     8221 ttttacatcg ttgtaagaat cttttgctct taaagtacgg aagttaaaga ttttaatttg
     8281 atttaaagat agaagtttaa taaatttcat atggagggtt gagatttacc aatgagaagc
     8341 cctattaaaa tatcatgtag ccaacagtgt gacaaaatta agatgctatc aaatcatctg
     8401 tctggccatt ggtctccctt cctttttgaa atcaatgtct taggtaacca aactctaatg
     8461 ttgtgtccat gttagcgtgt cagtaaagca gagatgttct tcagggtaga cactgaatta
     8521 aatttttaaa tcatttttta aagcaaggcg gttcttagaa agtgcctttt cagaagatgg
     8581 tgctgtagat ttttattttt caaatagcat gaggctaaaa atttgaaaga taaattattt
     8641 tagaattcca agagtatgac cgtttcatat aaataatgtt atttgttgtt ctgaatctgg
     8701 tccaagggaa ccaagtaaag cttttattca gtaaagtatc taagtaaatg ctcaccaaat
     8761 atattttgta agtttaagaa cacagttttt aacagaatta accgtttcag ttctcagctg
     8821 tgttgcaggt attatataag gcatacaaaa cagcaagttt gcttaacttt ttaacaagag
     8881 tatggatata gtagtaagtg cccgacagca aaggtaactt gccagaaatt atgtcatagg
     8941 ctacgttttc ccccccagca tattgaccct tttgtaaata tctactggca gcctcttcta
     9001 attaatcttt attaaagaag actgcttata aagatggagc caagtcatca tggaaatcag
     9061 tgtaagagga gaagtaaaat gattctctat ctttagggaa attttttctt tttcaggcag
     9121 caagaaatat tctaaatgtt tccctctttt ttctagcata ggtgaaaagt gatgacagtg
     9181 catctatatg atcaattaat tagacataga acaggtaaaa ttgggctttg gaggaaataa
     9241 gtaagaggga ggataatagc aggactattc atactggttg gtaatttatc taccagaaag
     9301 cgattttccc ctgaactagg aagtagtaaa cagcagtaaa tgatcaccta accagttctt
     9361 gcttgtgaat ttggtgagca ctcttccaga aaatagactt aaaaacacac aaaaaaacac
     9421 acctcagtaa ccttgtatgc tgcattatgt aataatgata gtaaacttat attgattgtt
     9481 tggagtgtac tatgtctgtc tgcaaatata catgcacatt aaactctttc attttttata
     9541 atgtca
//
LOCUS       XM_032650042            8955 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC catalytic component 3
            (AGO3), transcript variant X5, mRNA.
ACCESSION   XM_032650042
VERSION     XM_032650042.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8955
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8955
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116762692"
     CDS             604..2484
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X3"
                     /protein_id="XP_032505933.1"
                     /db_xref="GeneID:116762692"
                     /translation="MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRR
                     KYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQK
                     HTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPF
                     VQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMW
                     AIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLK
                     NTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKI
                     NVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRY
                     CATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYE
                     LLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDIT
                     HPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSI
                     PAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMY
                     FA"
     misc_feature    604..945
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(739..741,784..786,826..828,838..840,892..894,
                     913..915,919..921)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1078..2355
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1489..1491,1501..1503,1537..1548,1555..1557,
                     1579..1581,1588..1590,1600..1602,1612..1614)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1693..1695,1699..1701,1909..1911,2323..2325)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 agggaggtgg ttgactcaat ggttcagcat tttaaagtaa ctatatttgg ggaccgtaga
       61 ccagtttatg atggaaaaag aagcctttac acagccaatc cacttcctgt ggcaactaca
      121 gggatttaga tgttacttta cctggggaag gtggaaaaga tcgacctttc aaggtgtcaa
      181 tcaaatttgt ctctcgggtg agttggcacc tactacatga agtactgaca ggacggacct
      241 tgccagagcc actggaatta gacaagccaa tcagcactaa tcctgtccat gctgttgatg
      301 tggtgctacg acatctgccc tccatgaaat atacgcctgt ggggcgttcc tttttctcag
      361 ctccagaagg atatgaccac cctctgggag ggggcaggga agtttggttt ggattccatc
      421 agtctgttcg gcctgccatg tggaaaatga tgcttaatat tgatgaaaga gacctctggc
      481 agcagtgtgg agaatagata gaggagaaaa aaactaatct gagaagccag ttaggaggct
      541 ttttcaatca ctagttcagt ttctgccact gccttctaca aagcacaacc tgtaattcag
      601 ttcatgtgtg aagttcttga cattcataat attgatgagc agccaagacc tctgactgat
      661 tctcatcggg taaaattcac caaagagata aaaggtctga aggttgaagt gactcattgt
      721 ggaacaatga gacggaaata ccgtgtttgt aatgtaacaa gaaggcctgc cagtcatcaa
      781 acctttcctt tacagttaga aaatggccaa actgtggaga gaacagtagc acagtatttc
      841 agagaaaaat atactcttca gctgaagtac ccacaccttc cctgtctgca agtggggcag
      901 gagcagaaac atacctatct gccactagaa gtctgtaata ttgtggcagg gcaacgatgt
      961 atcaagaagc taacggacaa tcaaacctcc actatgatca aagcaacagc aagatctgca
     1021 ccagatagac aagaggaaat tagcagattg gtaagaagtg caaattatga aacagatcca
     1081 tttgttcagg agtttcaatt taaagttcgg gatgaaatgg cccatgtaac cggacgcgta
     1141 cttccagcac ctatgctcca gtatggtggc cggaatcgga cagtagcaac accaagccac
     1201 ggagtatggg acatgcgagg gaaacagttc cacacaggag ttgaaatcaa aatgtgggct
     1261 atagcttgtt ttgccacaca gaggcagtgc agagaagaaa tattgaaggg tttcacggac
     1321 cagctgcgta agatttctaa agatgcaggg atgcccatcc agggccagcc ttgcttctgc
     1381 aaatacgcgc agggggcaga cagcgtggag cccatgttcc ggcatctcaa gaacacgtac
     1441 tctgggctac agctcattat tgtcatcctg ccagggaaga caccagtgta tgcggaggtg
     1501 aaacgtgttg gagatacact tttgggtatg gctacacagt gtgttcaagt caagaatgta
     1561 ataaaaacat cccctcaaac tctctcaaac ctgtgcctaa agataaatgt taaacttgga
     1621 gggatcaata atattcttgt acctcatcaa agaccttctg tgttccagca accagtgatc
     1681 tttttgggag cagatgtcac tcatccacca gctggtgatg ggaagaagcc ttctattgct
     1741 gctgttgtag gtagtatgga tgcccaccca agcagatact gtgctacagt aagagttcag
     1801 agaccccgac aggagatcat ccaggacctt gcctccatgg tccgagaact tctcattcag
     1861 ttttataagt caactcggtt caaacctact cgtatcatct tttatcggga tggtgtttca
     1921 gaggggcagt ttaggcaggt attatattat gaactactag caattcgaga agcctgcatc
     1981 agtttggaga aagactatca acctggaata acttacattg tagttcagaa gagacatcac
     2041 actcgattat tttgtgctga taggactgaa agggtcggaa gaagtggcaa tatcccagct
     2101 ggaacaacag ttgatacaga cattacacac ccatatgagt ttgattttta cctctgtagc
     2161 catgctggaa tacagggtac cagccgtcct tcacactatc atgttttatg ggatgataac
     2221 tgctttactg cagatgaact tcaactgcta acttaccagc tctgccacac ttacgtgcgc
     2281 tgcacacgat ctgtttctat acctgcacca gcgtattatg ctcacctggt agcatttaga
     2341 gccagatatc atcttgtgga caaagaacat gacagtgctg aaggaagtca cgtttcagga
     2401 cagagcaatg gacgagatcc acaggctctt gccaaggctg tacagattca ccaagatacc
     2461 ttacgcacaa tgtactttgc ttaaaaagtc tcagaatatt ctctgagagg aagaactgga
     2521 agatgaatca acatacaact tatgtttcca gtggagtcag ctgagtgggg atgcctccag
     2581 ccatacagaa accaacactg tgtgggggcc agggtatgat ctttatgttg atacaaggaa
     2641 gattgtttac ttcatcaagg aacacagcac cattatgcaa tatgaaacca gccaactgct
     2701 tttttgtgcg gtctcctgta ggaagtatcg cgatcatttt gttttcactt tcttgtagtc
     2761 taaccctttt aatgccttta cctcaagttg cttggcagca caactctttg caaaaaaaaa
     2821 aagtaaagaa aaagtaaatg atggtttttt aaaaaacaca cctatatgaa taatcaaagt
     2881 gattgttcac aattatgtgt gcaaaaaatg tgcattcatg tattcttgta aaagttatct
     2941 gtatatttta cttatataca tgcatactgc atatgcatat atatctgtat ctatactgat
     3001 aatagatata tatgtatctc tgtatatatt ttatagttca ttccattggg gaactttctt
     3061 tcccttttat tatcctccca ccaccactat gatttctctc tctaccgccc ttgccttcat
     3121 cacctacatt tgtttttccc tgatgctacc agtaacattc agatgttcat gtatctggtt
     3181 catttgaata taaagcatgg caaactagat ttttattttg cacgccctac tcctgtcttg
     3241 tctcatacat aattctgagt cctcaactct tggtattgct ttcttaaact atatatatat
     3301 atatatatat atatatatat atatacacac acacatatat atataaaaaa tatgtttttg
     3361 tgagagtgaa tgtctgcccc ctcctgctct caacttacat ttgccatttg tgcaatgtgt
     3421 acataagcag tagcaaccca aactattctt tttctttagt gagtttgtta aagctgctat
     3481 aaatatatta aaaaaaaaaa acacaacttt gtcagaagtt gtaactctct atataagtga
     3541 tatgtattct aaagtcttct gtttctatgt gttatacatg gaaatccctt aaaactttta
     3601 taaagggtaa atattttaaa tgattggaac tgtgtagggt tgaggcctct gaaattgggt
     3661 ggagagaagg gattgtggag ggttttttgg gttttttttt actagtttat ttgctgcctc
     3721 tcatacctta atgtgatttt catatatata tatttttata tatatgtgtg ttgtatatat
     3781 ataaacatat atgtatgtgt tttgaagtat agcttccttt tcttttatat ttattagaat
     3841 agtgctttaa taattataga atcatattgg caacatcttt tatagaaata taatcatgtt
     3901 tattttaaga actgacaact tgtttttgct ctcttttagt gcaataagca gttttaaaag
     3961 aaagctgtgt ctgtttgaca tctttaccac agatagtggg agaaacaggc acctccataa
     4021 ttttaaaagg gcaaagtata tagccttaat ttcagaagga aagttttgta attttcaagt
     4081 ttaaagcatg tcttataaaa atcataatga aaatgaagga agttaaattt cctaaatgag
     4141 tattgacctt gaatattaga aataaagttg aagaactttg atttaagtaa tgacagcgac
     4201 tagctttaga tttagaagat atttaaattc tttgaaaata gatcatgttt attgaaaaat
     4261 catactggta aggtgcccat tttcacttac taacatgagt caggaaaata taaaatgata
     4321 ttttaaaaac tttttttgct aattcatcac cagtgtaact ttccttttaa aattagggtg
     4381 atggtgacaa aggaagttag gactttgagc atttgaaatg agttaaatca ctgaaatatt
     4441 gaaaaaagtt ttgcaaaact tttgttttat tgacttcact ttaagatatt aaaaaatact
     4501 ataaagctgt caaaaccaag tttatcagta accttggatt caggggagct ttgcactttg
     4561 taactcatga aaatagcatt ttaatttttt tttttttttt tttgcactgg ttcagagtat
     4621 agatattaca gattgtttcc agtgggcatt gttgttaacc tttcagaatt ccatctgcac
     4681 atgaaaacaa atggattagc tctttagttc tctcttacct ataatccaca cttattgcca
     4741 atttactgta ttttgagcct aaaatctgag cccatatcct ccaacaggta tgaaatcttt
     4801 tgtccctctg ccagaaaact aagaaagtac tgtattttgt atgtttatta tattgaagtg
     4861 tctgaaatgc aatttacaac actgttttaa agctctttac ataaggtaat gtttgtgtag
     4921 tgtatacatt tttctcccaa ccctcccccc tcctccaaaa aatttctata aagagtgtat
     4981 tttttttaca ttgaaatttc actgaatata ggcaagagca taggcaagag aagaaaatag
     5041 tatatcctag gtggtaaaaa cctgatggcg tatgtttgct cagtatgagt aaaacatctt
     5101 cctttatcag tgggagctgt acagattgac gtggaaaacg ttagagccca gggaagaact
     5161 gtagataacc tttccctatt tacctgcttt acctaatttt cagtcactta atctcacatg
     5221 tgctaaagta aagcctataa tttaaaacta tttagaagga cttttacaga ggaaaaaaat
     5281 tttttttaat ataaagcttt acatttgaag tgagttcttt ttagggtgct cttagagttt
     5341 caacattgct agtttaaagt tggttaactt gaaagaatat gtatagtata ttctattttg
     5401 cttactaaca aattggtata tcaaactcaa ttataagaaa ctttgtgctt agaactttaa
     5461 ggtaaatact aagtggcaaa tattttttga aatttgtttc gttattatac ttctggcgta
     5521 gaattgctga tcttttttta tttaaaaaaa aaaaaaaagg ttgttttgag tttaatggtc
     5581 atgaaactca acagtgacct ttctgttcct gcccttgctc actaactata cagtgaatgc
     5641 taaatttctg tctgctgttt tctgtgatat aagagtgact ttaaaatgtc agtccgagca
     5701 actggtataa tagattttca tgtgaagcag aattgggagt ttaatgtata ttctggatgg
     5761 caaatgtgta aagtgctgat acatgtttta tattacagta tcacgttact ggcattgagg
     5821 accatgcatt tataataccg tagctgctat atttatttaa tgaagtagag tctgacagtt
     5881 actgcactta acagtaagga aatgagcagg attcaaggct agtgttagac tttttttttt
     5941 ttcctaaata agatttaaga acatgaaata tcaaggtaac aaagggtgct gccaatttag
     6001 tttcaattta atatcaggat actctttctt tgttttagaa atgtggattt ttactttagc
     6061 agttttggaa aagggtacct cagcctcctc agtactggtt tttagcatat ttttcacagg
     6121 agtacaggtg ccctttattt ttttcttaat atttaccttt aaacaagttt ctcagaaaaa
     6181 gtactctgta gaaatcttcc tgtttgtaac ctattaattt atttatcttc ctacaagaga
     6241 gtctaggtgg gattctagta ggaatgtact gggtgtttta gaaggcactt gataaagatt
     6301 catctctact ttctagcatg gagacttcta gccctctaaa cacctatact ggttttccaa
     6361 actaggttct ctgatgaccc accactgcct aaagtttact tatatattct ctaatggatt
     6421 ttagtatgac agaccccatg acaggcttag tcatgacaga cttaaaagta agactaagga
     6481 gatagaagct gagttgccat tcagtaaaaa cggctggctg aggatctcaa cgtttaagga
     6541 aaaggtgaac actcagagtg ccagtaatca gtctgaagga tctattattg atggattata
     6601 gaccaggaat tagagactct tattcaagga atttggtggg tgtttgattc agaggccaac
     6661 atgaatttgc catgggtggt gatttttatg aaatctgtga agctagccac ttggattcag
     6721 ctagaatatt ttgtagtctt actgttaaaa cttgatagtg atgttttgcc aagaagctta
     6781 actgacagct cgggataaat tttattcagt atcattaagc ctgggttaaa tatttattta
     6841 actcatcctc ttagatgttc tcctactgaa tagtttttaa agacaagttg cccctaacag
     6901 taacttgcta cttaaattat cttttatgag ttatcagtca agctgcaaaa ggacaccatt
     6961 gaactggcat ctttattttg gcttttttaa tccttttcat tctttttgag aattcatgga
     7021 tgtgttaaag cttcaataat aatacctggg agactttatc aagtgaggcc tttgtgagtg
     7081 gcggtataac cctgactcta aagtctgtct ttattttcct ttttccctct catttgatca
     7141 tataaagcac tttgtgattc tacaggagtc gaaaaacaag ccaagaataa tgtgtaaaat
     7201 cagtacatag atgtgaaagt cagaattttc tccaaaaaat cttttttaaa aaatttcctg
     7261 cttatactaa gaacattttt gatcgatggc aatattggaa atgatgctgt gattagtgaa
     7321 acctaaactg actcccagga agaaaaattc agtctccctc tctccctctc tctctctctc
     7381 tctctgtgtg tgtgtgtgtg tgtatatata tatatatata tatatatata tatatatata
     7441 tagcctcaaa gggaaaaata tttttaactt tttcctactt ttaaaagtgg tacacttcag
     7501 tttataattt tccatgttgg tcaaaatcat ttcttttaac taaggtataa tggtcaagac
     7561 ttatgctaat attatctact gctagttcaa ttttattttt ctttacccat caaagatagt
     7621 gctctatatt tttacatcgt tgtaagaatc ttttgctctt aaagtacgga agttaaagat
     7681 tttaatttga tttaaagata gaagtttaat aaatttcata tggagggttg agatttacca
     7741 atgagaagcc ctattaaaat atcatgtagc caacagtgtg acaaaattaa gatgctatca
     7801 aatcatctgt ctggccattg gtctcccttc ctttttgaaa tcaatgtctt aggtaaccaa
     7861 actctaatgt tgtgtccatg ttagcgtgtc agtaaagcag agatgttctt cagggtagac
     7921 actgaattaa atttttaaat cattttttaa agcaaggcgg ttcttagaaa gtgccttttc
     7981 agaagatggt gctgtagatt tttatttttc aaatagcatg aggctaaaaa tttgaaagat
     8041 aaattatttt agaattccaa gagtatgacc gtttcatata aataatgtta tttgttgttc
     8101 tgaatctggt ccaagggaac caagtaaagc ttttattcag taaagtatct aagtaaatgc
     8161 tcaccaaata tattttgtaa gtttaagaac acagttttta acagaattaa ccgtttcagt
     8221 tctcagctgt gttgcaggta ttatataagg catacaaaac agcaagtttg cttaactttt
     8281 taacaagagt atggatatag tagtaagtgc ccgacagcaa aggtaacttg ccagaaatta
     8341 tgtcataggc tacgttttcc cccccagcat attgaccctt ttgtaaatat ctactggcag
     8401 cctcttctaa ttaatcttta ttaaagaaga ctgcttataa agatggagcc aagtcatcat
     8461 ggaaatcagt gtaagaggag aagtaaaatg attctctatc tttagggaaa ttttttcttt
     8521 ttcaggcagc aagaaatatt ctaaatgttt ccctcttttt tctagcatag gtgaaaagtg
     8581 atgacagtgc atctatatga tcaattaatt agacatagaa caggtaaaat tgggctttgg
     8641 aggaaataag taagagggag gataatagca ggactattca tactggttgg taatttatct
     8701 accagaaagc gattttcccc tgaactagga agtagtaaac agcagtaaat gatcacctaa
     8761 ccagttcttg cttgtgaatt tggtgagcac tcttccagaa aatagactta aaaacacaca
     8821 aaaaaacaca cctcagtaac cttgtatgct gcattatgta ataatgatag taaacttata
     8881 ttgattgttt ggagtgtact atgtctgtct gcaaatatac atgcacatta aactctttca
     8941 ttttttataa tgtca
//
LOCUS       XM_032650052           10194 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus argonaute RISC catalytic component 3
            (AGO3), transcript variant X6, mRNA.
ACCESSION   XM_032650052
VERSION     XM_032650052.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10194
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10194
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762692"
     CDS             1843..3723
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X3"
                     /protein_id="XP_032505943.1"
                     /db_xref="GeneID:116762692"
                     /translation="MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRR
                     KYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQK
                     HTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPF
                     VQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMW
                     AIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLK
                     NTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKI
                     NVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRY
                     CATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYE
                     LLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDIT
                     HPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSI
                     PAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMY
                     FA"
     misc_feature    1843..2184
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1978..1980,2023..2025,2065..2067,2077..2079,
                     2131..2133,2152..2154,2158..2160)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    2317..3594
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2728..2730,2740..2742,2776..2787,2794..2796,
                     2818..2820,2827..2829,2839..2841,2851..2853)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2932..2934,2938..2940,3148..3150,3562..3564)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
        1 cccattgttc gaagaaatca caaattttaa atattttgaa ctgaagagta ttgaaaatag
       61 tacatatcag aattggtatg attagctaaa gcaatgctta gagagaattt aaaaccttaa
      121 atgcctatta gaaaagaaga aaagcatcaa ttacctatac attcatctta ataagttaga
      181 aaaataacat aattaaatgc aaagaaaaat agaaggaaat aagagttaaa aacagaaaat
      241 aatgaaatag aaaacaaatt tacctctatc ctgtaggtag gaagacttca aaagttttca
      301 agaaggatag tgacatgatc atatttgttt tccagaaaga gacctctggc agcagtgtgg
      361 agaatagata gaggagaaaa aaactaatct gagaagccag ttaggaggct ttttcaatca
      421 ctagttcagg taagagatgg tgatggtcta atgtgggatg gagaggaagg aacatattac
      481 aaagattaag ttgaaaaaat aggtttaaaa accatgtcca gaaaaaaact ttgggtatag
      541 ttactggtac atggaactga ttggaaatga agagaccaga aggtttacta ggtttttgaa
      601 ggaattggtt ttggaagtaa agctacaatc ttagtgtatt aggttcaacc agagaagcag
      661 aaccagtagg agacacatag agagagagag cgattgggct tacacagttg taggggctag
      721 atagtcaagt ctgaaatcct tagggtaggc tatcaggaag ggcaggctag aacacatggg
      781 tatggactgt agctgctgtc cataggtgga atttcttctc tctcttgggg atacctcagc
      841 cccgttttta aggcctttca actgactaaa tgaggccaac tcagattatc caggataata
      901 tccctttaat tacatctata aaatatcttc acagcaatac ctagattagt gtttgattga
      961 ataactgtca agtagtagcc tagccaaatt gacatattaa aaataaaaaa acaaaacccc
     1021 atacctggcc tacagaattc tatgattatt cagtctttga aacaaccttc ctattcccaa
     1081 accttcagtg actgtgctag ctaactgtgc tggcttttat aaactagctt tcaagaaggg
     1141 catactcacc aacatacatt cagaatagtg actcattcat accaggtatg aatgataata
     1201 ctgaatatgg gaggtaggtc tgctgttgct ggttagttgg cagtatatac catgtataaa
     1261 tatgtcaaat gtaaatatgt ctaaagcttg aggattctat ggaacatacg gacagagtca
     1321 tctagtatgt agttggaaat gcagatgtga aaatctgtag tggtgtgagc taaaagtaaa
     1381 agttttggga ctccttagta tataaatcca tatttgaaac tctgaaaatg gaaaaacttt
     1441 agaaatagta tttagattga aaacaggaat gaaaaggata gagccatgga gaatactagc
     1501 atttaaggaa gaggaaccag tgagcaatta atgattatca caggcagtat gagagccaag
     1561 aaatggtgtc aaggaagcca agggaggaaa cattcagaga gtagatttta cagttaagcg
     1621 ccggagcttt tccagtaaaa tcaagagtaa gacaaggatg tcaatactat gatatttagt
     1681 cactattgtg tttgctaact tctgttcttc ttacaggttt cagtctacat gttacttcct
     1741 tgagaagcag tatttgacac ccttcttgcc ccccatccag ccattccccc aagtctgatt
     1801 tctgccactg ccttctacaa agcacaacct gtaattcagt tcatgtgtga agttcttgac
     1861 attcataata ttgatgagca gccaagacct ctgactgatt ctcatcgggt aaaattcacc
     1921 aaagagataa aaggtctgaa ggttgaagtg actcattgtg gaacaatgag acggaaatac
     1981 cgtgtttgta atgtaacaag aaggcctgcc agtcatcaaa cctttccttt acagttagaa
     2041 aatggccaaa ctgtggagag aacagtagca cagtatttca gagaaaaata tactcttcag
     2101 ctgaagtacc cacaccttcc ctgtctgcaa gtggggcagg agcagaaaca tacctatctg
     2161 ccactagaag tctgtaatat tgtggcaggg caacgatgta tcaagaagct aacggacaat
     2221 caaacctcca ctatgatcaa agcaacagca agatctgcac cagatagaca agaggaaatt
     2281 agcagattgg taagaagtgc aaattatgaa acagatccat ttgttcagga gtttcaattt
     2341 aaagttcggg atgaaatggc ccatgtaacc ggacgcgtac ttccagcacc tatgctccag
     2401 tatggtggcc ggaatcggac agtagcaaca ccaagccacg gagtatggga catgcgaggg
     2461 aaacagttcc acacaggagt tgaaatcaaa atgtgggcta tagcttgttt tgccacacag
     2521 aggcagtgca gagaagaaat attgaagggt ttcacggacc agctgcgtaa gatttctaaa
     2581 gatgcaggga tgcccatcca gggccagcct tgcttctgca aatacgcgca gggggcagac
     2641 agcgtggagc ccatgttccg gcatctcaag aacacgtact ctgggctaca gctcattatt
     2701 gtcatcctgc cagggaagac accagtgtat gcggaggtga aacgtgttgg agatacactt
     2761 ttgggtatgg ctacacagtg tgttcaagtc aagaatgtaa taaaaacatc ccctcaaact
     2821 ctctcaaacc tgtgcctaaa gataaatgtt aaacttggag ggatcaataa tattcttgta
     2881 cctcatcaaa gaccttctgt gttccagcaa ccagtgatct ttttgggagc agatgtcact
     2941 catccaccag ctggtgatgg gaagaagcct tctattgctg ctgttgtagg tagtatggat
     3001 gcccacccaa gcagatactg tgctacagta agagttcaga gaccccgaca ggagatcatc
     3061 caggaccttg cctccatggt ccgagaactt ctcattcagt tttataagtc aactcggttc
     3121 aaacctactc gtatcatctt ttatcgggat ggtgtttcag aggggcagtt taggcaggta
     3181 ttatattatg aactactagc aattcgagaa gcctgcatca gtttggagaa agactatcaa
     3241 cctggaataa cttacattgt agttcagaag agacatcaca ctcgattatt ttgtgctgat
     3301 aggactgaaa gggtcggaag aagtggcaat atcccagctg gaacaacagt tgatacagac
     3361 attacacacc catatgagtt tgatttttac ctctgtagcc atgctggaat acagggtacc
     3421 agccgtcctt cacactatca tgttttatgg gatgataact gctttactgc agatgaactt
     3481 caactgctaa cttaccagct ctgccacact tacgtgcgct gcacacgatc tgtttctata
     3541 cctgcaccag cgtattatgc tcacctggta gcatttagag ccagatatca tcttgtggac
     3601 aaagaacatg acagtgctga aggaagtcac gtttcaggac agagcaatgg acgagatcca
     3661 caggctcttg ccaaggctgt acagattcac caagatacct tacgcacaat gtactttgct
     3721 taaaaagtct cagaatattc tctgagagga agaactggaa gatgaatcaa catacaactt
     3781 atgtttccag tggagtcagc tgagtgggga tgcctccagc catacagaaa ccaacactgt
     3841 gtgggggcca gggtatgatc tttatgttga tacaaggaag attgtttact tcatcaagga
     3901 acacagcacc attatgcaat atgaaaccag ccaactgctt ttttgtgcgg tctcctgtag
     3961 gaagtatcgc gatcattttg ttttcacttt cttgtagtct aaccctttta atgcctttac
     4021 ctcaagttgc ttggcagcac aactctttgc aaaaaaaaaa agtaaagaaa aagtaaatga
     4081 tggtttttta aaaaacacac ctatatgaat aatcaaagtg attgttcaca attatgtgtg
     4141 caaaaaatgt gcattcatgt attcttgtaa aagttatctg tatattttac ttatatacat
     4201 gcatactgca tatgcatata tatctgtatc tatactgata atagatatat atgtatctct
     4261 gtatatattt tatagttcat tccattgggg aactttcttt cccttttatt atcctcccac
     4321 caccactatg atttctctct ctaccgccct tgccttcatc acctacattt gtttttccct
     4381 gatgctacca gtaacattca gatgttcatg tatctggttc atttgaatat aaagcatggc
     4441 aaactagatt tttattttgc acgccctact cctgtcttgt ctcatacata attctgagtc
     4501 ctcaactctt ggtattgctt tcttaaacta tatatatata tatatatata tatatatata
     4561 tatacacaca cacatatata tataaaaaat atgtttttgt gagagtgaat gtctgccccc
     4621 tcctgctctc aacttacatt tgccatttgt gcaatgtgta cataagcagt agcaacccaa
     4681 actattcttt ttctttagtg agtttgttaa agctgctata aatatattaa aaaaaaaaaa
     4741 cacaactttg tcagaagttg taactctcta tataagtgat atgtattcta aagtcttctg
     4801 tttctatgtg ttatacatgg aaatccctta aaacttttat aaagggtaaa tattttaaat
     4861 gattggaact gtgtagggtt gaggcctctg aaattgggtg gagagaaggg attgtggagg
     4921 gttttttggg ttttttttta ctagtttatt tgctgcctct cataccttaa tgtgattttc
     4981 atatatatat atttttatat atatgtgtgt tgtatatata taaacatata tgtatgtgtt
     5041 ttgaagtata gcttcctttt cttttatatt tattagaata gtgctttaat aattatagaa
     5101 tcatattggc aacatctttt atagaaatat aatcatgttt attttaagaa ctgacaactt
     5161 gtttttgctc tcttttagtg caataagcag ttttaaaaga aagctgtgtc tgtttgacat
     5221 ctttaccaca gatagtggga gaaacaggca cctccataat tttaaaaggg caaagtatat
     5281 agccttaatt tcagaaggaa agttttgtaa ttttcaagtt taaagcatgt cttataaaaa
     5341 tcataatgaa aatgaaggaa gttaaatttc ctaaatgagt attgaccttg aatattagaa
     5401 ataaagttga agaactttga tttaagtaat gacagcgact agctttagat ttagaagata
     5461 tttaaattct ttgaaaatag atcatgttta ttgaaaaatc atactggtaa ggtgcccatt
     5521 ttcacttact aacatgagtc aggaaaatat aaaatgatat tttaaaaact ttttttgcta
     5581 attcatcacc agtgtaactt tccttttaaa attagggtga tggtgacaaa ggaagttagg
     5641 actttgagca tttgaaatga gttaaatcac tgaaatattg aaaaaagttt tgcaaaactt
     5701 ttgttttatt gacttcactt taagatatta aaaaatacta taaagctgtc aaaaccaagt
     5761 ttatcagtaa ccttggattc aggggagctt tgcactttgt aactcatgaa aatagcattt
     5821 taattttttt tttttttttt ttgcactggt tcagagtata gatattacag attgtttcca
     5881 gtgggcattg ttgttaacct ttcagaattc catctgcaca tgaaaacaaa tggattagct
     5941 ctttagttct ctcttaccta taatccacac ttattgccaa tttactgtat tttgagccta
     6001 aaatctgagc ccatatcctc caacaggtat gaaatctttt gtccctctgc cagaaaacta
     6061 agaaagtact gtattttgta tgtttattat attgaagtgt ctgaaatgca atttacaaca
     6121 ctgttttaaa gctctttaca taaggtaatg tttgtgtagt gtatacattt ttctcccaac
     6181 cctcccccct cctccaaaaa atttctataa agagtgtatt ttttttacat tgaaatttca
     6241 ctgaatatag gcaagagcat aggcaagaga agaaaatagt atatcctagg tggtaaaaac
     6301 ctgatggcgt atgtttgctc agtatgagta aaacatcttc ctttatcagt gggagctgta
     6361 cagattgacg tggaaaacgt tagagcccag ggaagaactg tagataacct ttccctattt
     6421 acctgcttta cctaattttc agtcacttaa tctcacatgt gctaaagtaa agcctataat
     6481 ttaaaactat ttagaaggac ttttacagag gaaaaaaatt ttttttaata taaagcttta
     6541 catttgaagt gagttctttt tagggtgctc ttagagtttc aacattgcta gtttaaagtt
     6601 ggttaacttg aaagaatatg tatagtatat tctattttgc ttactaacaa attggtatat
     6661 caaactcaat tataagaaac tttgtgctta gaactttaag gtaaatacta agtggcaaat
     6721 attttttgaa atttgtttcg ttattatact tctggcgtag aattgctgat ctttttttat
     6781 ttaaaaaaaa aaaaaaaggt tgttttgagt ttaatggtca tgaaactcaa cagtgacctt
     6841 tctgttcctg cccttgctca ctaactatac agtgaatgct aaatttctgt ctgctgtttt
     6901 ctgtgatata agagtgactt taaaatgtca gtccgagcaa ctggtataat agattttcat
     6961 gtgaagcaga attgggagtt taatgtatat tctggatggc aaatgtgtaa agtgctgata
     7021 catgttttat attacagtat cacgttactg gcattgagga ccatgcattt ataataccgt
     7081 agctgctata tttatttaat gaagtagagt ctgacagtta ctgcacttaa cagtaaggaa
     7141 atgagcagga ttcaaggcta gtgttagact tttttttttt tcctaaataa gatttaagaa
     7201 catgaaatat caaggtaaca aagggtgctg ccaatttagt ttcaatttaa tatcaggata
     7261 ctctttcttt gttttagaaa tgtggatttt tactttagca gttttggaaa agggtacctc
     7321 agcctcctca gtactggttt ttagcatatt tttcacagga gtacaggtgc cctttatttt
     7381 tttcttaata tttaccttta aacaagtttc tcagaaaaag tactctgtag aaatcttcct
     7441 gtttgtaacc tattaattta tttatcttcc tacaagagag tctaggtggg attctagtag
     7501 gaatgtactg ggtgttttag aaggcacttg ataaagattc atctctactt tctagcatgg
     7561 agacttctag ccctctaaac acctatactg gttttccaaa ctaggttctc tgatgaccca
     7621 ccactgccta aagtttactt atatattctc taatggattt tagtatgaca gaccccatga
     7681 caggcttagt catgacagac ttaaaagtaa gactaaggag atagaagctg agttgccatt
     7741 cagtaaaaac ggctggctga ggatctcaac gtttaaggaa aaggtgaaca ctcagagtgc
     7801 cagtaatcag tctgaaggat ctattattga tggattatag accaggaatt agagactctt
     7861 attcaaggaa tttggtgggt gtttgattca gaggccaaca tgaatttgcc atgggtggtg
     7921 atttttatga aatctgtgaa gctagccact tggattcagc tagaatattt tgtagtctta
     7981 ctgttaaaac ttgatagtga tgttttgcca agaagcttaa ctgacagctc gggataaatt
     8041 ttattcagta tcattaagcc tgggttaaat atttatttaa ctcatcctct tagatgttct
     8101 cctactgaat agtttttaaa gacaagttgc ccctaacagt aacttgctac ttaaattatc
     8161 ttttatgagt tatcagtcaa gctgcaaaag gacaccattg aactggcatc tttattttgg
     8221 cttttttaat ccttttcatt ctttttgaga attcatggat gtgttaaagc ttcaataata
     8281 atacctggga gactttatca agtgaggcct ttgtgagtgg cggtataacc ctgactctaa
     8341 agtctgtctt tattttcctt tttccctctc atttgatcat ataaagcact ttgtgattct
     8401 acaggagtcg aaaaacaagc caagaataat gtgtaaaatc agtacataga tgtgaaagtc
     8461 agaattttct ccaaaaaatc ttttttaaaa aatttcctgc ttatactaag aacatttttg
     8521 atcgatggca atattggaaa tgatgctgtg attagtgaaa cctaaactga ctcccaggaa
     8581 gaaaaattca gtctccctct ctccctctct ctctctctct ctctgtgtgt gtgtgtgtgt
     8641 gtatatatat atatatatat atatatatat atatatatat agcctcaaag ggaaaaatat
     8701 ttttaacttt ttcctacttt taaaagtggt acacttcagt ttataatttt ccatgttggt
     8761 caaaatcatt tcttttaact aaggtataat ggtcaagact tatgctaata ttatctactg
     8821 ctagttcaat tttatttttc tttacccatc aaagatagtg ctctatattt ttacatcgtt
     8881 gtaagaatct tttgctctta aagtacggaa gttaaagatt ttaatttgat ttaaagatag
     8941 aagtttaata aatttcatat ggagggttga gatttaccaa tgagaagccc tattaaaata
     9001 tcatgtagcc aacagtgtga caaaattaag atgctatcaa atcatctgtc tggccattgg
     9061 tctcccttcc tttttgaaat caatgtctta ggtaaccaaa ctctaatgtt gtgtccatgt
     9121 tagcgtgtca gtaaagcaga gatgttcttc agggtagaca ctgaattaaa tttttaaatc
     9181 attttttaaa gcaaggcggt tcttagaaag tgccttttca gaagatggtg ctgtagattt
     9241 ttatttttca aatagcatga ggctaaaaat ttgaaagata aattatttta gaattccaag
     9301 agtatgaccg tttcatataa ataatgttat ttgttgttct gaatctggtc caagggaacc
     9361 aagtaaagct tttattcagt aaagtatcta agtaaatgct caccaaatat attttgtaag
     9421 tttaagaaca cagtttttaa cagaattaac cgtttcagtt ctcagctgtg ttgcaggtat
     9481 tatataaggc atacaaaaca gcaagtttgc ttaacttttt aacaagagta tggatatagt
     9541 agtaagtgcc cgacagcaaa ggtaacttgc cagaaattat gtcataggct acgttttccc
     9601 ccccagcata ttgacccttt tgtaaatatc tactggcagc ctcttctaat taatctttat
     9661 taaagaagac tgcttataaa gatggagcca agtcatcatg gaaatcagtg taagaggaga
     9721 agtaaaatga ttctctatct ttagggaaat tttttctttt tcaggcagca agaaatattc
     9781 taaatgtttc cctctttttt ctagcatagg tgaaaagtga tgacagtgca tctatatgat
     9841 caattaatta gacatagaac aggtaaaatt gggctttgga ggaaataagt aagagggagg
     9901 ataatagcag gactattcat actggttggt aatttatcta ccagaaagcg attttcccct
     9961 gaactaggaa gtagtaaaca gcagtaaatg atcacctaac cagttcttgc ttgtgaattt
    10021 ggtgagcact cttccagaaa atagacttaa aaacacacaa aaaaacacac ctcagtaacc
    10081 ttgtatgctg cattatgtaa taatgatagt aaacttatat tgattgtttg gagtgtacta
    10141 tgtctgtctg caaatataca tgcacattaa actctttcat tttttataat gtca
//
LOCUS       XM_032650078            2722 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus eEF1A lysine and N-terminal
            methyltransferase (EEF1AKNMT), transcript variant X1, mRNA.
ACCESSION   XM_032650078
VERSION     XM_032650078.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2722
                     /gene="EEF1AKNMT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 2 long SRA reads, 15
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762722"
     CDS             416..2515
                     /gene="EEF1AKNMT"
                     /codon_start=1
                     /product="eEF1A lysine and N-terminal methyltransferase"
                     /protein_id="XP_032505969.1"
                     /db_xref="GeneID:116762722"
                     /translation="MNLLPKSPKEFGSIDYWEKFFQQRGRKAFEWYGTYLELCGLLHK
                     YIKPREKVLVIGCGNSELSEQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLK
                     MDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS
                     LAQAHVLKKAVGHFSREGWMVRVHQVANSQDQLLEAEPRFSLPVFAFIMTKFRPVPGS
                     ALQIFELCAQEQGKPVRLESAERLAEAVRERQQYAWLCSQLYRKAGLGSVSLDLCSGD
                     TGEPRYTLHVVDSPTVKPSRDSHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLI
                     TVALHRGQQYEGMDSIQAELSARVMELAPAGMPAQQQVPFLSVGGDIGVRTVQHQDCS
                     PLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHRAQKKRKKDRKKQRP
                     ADTPEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLETPLGLLVVGLGGGSL
                     PLFVHDHFPKSCIDAVEIDPSMLQVATQWFGFSQSDRMKVHIADGLDYITSLAEEEAR
                     RHYDVIMFDVDSKDPTLGMSCPPPAFVAQPFLQKVKSILTPEGVFILNLVCRDLGLKD
                     SVLAGLKAVFPLLYVRRIEGEVNEILFCQPHPERKLATPELLEMAQALEQTLRKPGKG
                     WDDTYVLSDMLKTVKIV"
     misc_feature    569..877
                     /gene="EEF1AKNMT"
                     /note="Methyltransferase domain; Region: Methyltransf_25;
                     pfam13649"
                     /db_xref="CDD:463945"
     misc_feature    <1928..2332
                     /gene="EEF1AKNMT"
                     /note="Spermidine synthase (polyamine
                     aminopropyltransferase) [Amino acid transport and
                     metabolism]; Region: SpeE; COG0421"
                     /db_xref="CDD:440190"
ORIGIN      
        1 agccgccggc gtgaggcgag cgcgttgcag ccaatgacgt gccaggatga aaatcactga
       61 ccaatgagct gctgagatgg tgtggacagc caaccaatcg cgaagcctcg cacccggata
      121 taattgccgg ttctgaaacc gagctctgaa aaagtgtgag ggcctccccg cacgggtctg
      181 gggctttggg atggaacagg gggtgagcgt ttactaggtt cagtgcctta cgtgtgcggt
      241 gggcgtgtaa ggatcatctc tttgggtttt gggtgaggga caagtcaatg tggctgtttg
      301 tcctaggaaa gaattcccgc tgcggtgttc cagaaccagc gcgtggggaa acccctcgga
      361 tggtaccgca cagggagtag gagagtcttg aagacgcagc tcgagcagtg ggaatatgaa
      421 tctcttacct aaaagcccta aggagtttgg ctccattgac tattgggaga agttcttcca
      481 gcagcgggga aggaaagctt tcgagtggta tggaacctac ctggaactgt gcgggttgct
      541 gcacaaatat atcaagccca gggaaaaggt gctggtgatt gggtgtggta actcagagct
      601 aagcgagcag ctgtatgacg tgggctatca ggatatagtg aacattgaca tcagtgaggt
      661 tgtcatcaag caaatgaagg aacgcaatgc cagccgacgg ccccagatga gcttcttgaa
      721 gatggacatg acacagatgg agtttcccga tgcctcattc caggtggtgt tggacaaggg
      781 caccctggac gctgtcctga cagatgagga ggagaagacc ctgcagcagg tggacaggat
      841 gctggctgag gttggccgtg tcctgcaggt gggcggtcgc tacctctgca tctccctggc
      901 tcaggctcac gtcctgaaga aagcagtggg tcacttctct cgggaggggt ggatggtgag
      961 ggtgcaccag gtggccaaca gccaagacca gctgttggaa gcagagcctc ggttctcctt
     1021 gcctgtcttt gccttcatca tgaccaagtt caggccggtc cctggctctg cccttcagat
     1081 ctttgagctg tgtgctcagg agcagggcaa gcctgtgcgg ctggagagtg ccgagcggct
     1141 ggctgaggcg gtgcgggagc ggcagcagta tgcctggctg tgcagccagc tgtaccgcaa
     1201 ggccgggctg gggagtgtgt ctctggactt gtgcagtggg gacacggggg agccacgcta
     1261 caccctccac gtggtggaca gccccactgt gaaaccatcg cgggacagtc attttgccat
     1321 tttcatcatc ccccagggtc gggagaccga gtggctcttt ggcatggagg agggccggaa
     1381 gcagctggca gccagtgcgg gcttcaggag gctgatcaca gtggcccttc accgaggtca
     1441 gcagtacgaa ggcatggaca gcatccaggc cgagctgtcg gccagagtca tggagctggc
     1501 cccggccggg atgcccgccc agcagcaggt acccttcctg tctgttggtg gggacatcgg
     1561 ggtccggact gttcagcacc aagactgcag ccctttgagt ggcgactacg tcatcgagga
     1621 tgtgcagggg gatgacaagc gctactttcg gcggctgatc ttcctcagca acaggaacgt
     1681 ggtgcagtca gaagccaggc tgctgaagga tgtgtctcac agagcccaga agaaacggaa
     1741 aaaggacagg aagaagcagc ggcctgctga tactccagag gacctccctg cagctccggg
     1801 gcagtccatt gataagagtt acctgtgctg tgaacaccat aaagccatga ttgccggcct
     1861 tgccctgctg agaaacccgg agctgctcct agagacccca ctgggattgt tggtggtagg
     1921 cctgggtggg ggcagcctcc ccctttttgt ccacgatcat ttcccaaagt cctgcatcga
     1981 tgctgtggag atcgacccct ccatgttgca agtggccact cagtggtttg gcttctccca
     2041 gagtgaccgt atgaaggtcc acatcgcaga tggcctggac tatattacca gcctggcaga
     2101 agaagaagca cgacgtcact acgatgtcat aatgtttgat gtggacagta aggacccaac
     2161 cctgggaatg agttgtccac ccccagcgtt tgtggcccag ccttttctgc agaaggtcaa
     2221 aagcatcttg actcctgaag gtgtctttat cctcaacctc gtgtgccgag acctagggct
     2281 aaaggactca gtgctggctg ggctcaaggc ggtgttcccc ctcctgtatg tccggcgaat
     2341 tgagggtgaa gtaaacgaga tcctgttctg tcagccgcac cctgagcgga aacttgccac
     2401 gccagagctg ctggaaatgg cccaggcctt ggagcaaacc ctgaggaagc ctggaaaggg
     2461 ctgggatgac acatacgtcc tgtcagacat gctcaaaact gtgaagattg tgtgattgtc
     2521 aggaccaggc agttccctca gcttcctgcc agactgacct tgggctcctg gcctaccaga
     2581 gattgaagaa atataatgca caatactttt taagccttgt atttttctta gtttcatact
     2641 cacctgcatg cgacctcctg cttggtgagg ttgcctgaag atctgggaaa ataaaaaagt
     2701 cctttccatc ctgtcttctt ca
//
LOCUS       XM_032650085            2559 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus eEF1A lysine and N-terminal
            methyltransferase (EEF1AKNMT), transcript variant X2, mRNA.
ACCESSION   XM_032650085
VERSION     XM_032650085.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2559
                     /gene="EEF1AKNMT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762722"
     CDS             264..2363
                     /gene="EEF1AKNMT"
                     /codon_start=1
                     /product="eEF1A lysine and N-terminal methyltransferase"
                     /protein_id="XP_032505976.1"
                     /db_xref="GeneID:116762722"
                     /translation="MNLLPKSPKEFGSIDYWEKFFQQRGRKAFEWYGTYLELCGLLHK
                     YIKPREKVLVIGCGNSELSEQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLK
                     MDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS
                     LAQAHVLKKAVGHFSREGWMVRVHQVANSQDQLLEAEPRFSLPVFAFIMTKFRPVPGS
                     ALQIFELCAQEQGKPVRLESAERLAEAVRERQQYAWLCSQLYRKAGLGSVSLDLCSGD
                     TGEPRYTLHVVDSPTVKPSRDSHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLI
                     TVALHRGQQYEGMDSIQAELSARVMELAPAGMPAQQQVPFLSVGGDIGVRTVQHQDCS
                     PLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHRAQKKRKKDRKKQRP
                     ADTPEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLETPLGLLVVGLGGGSL
                     PLFVHDHFPKSCIDAVEIDPSMLQVATQWFGFSQSDRMKVHIADGLDYITSLAEEEAR
                     RHYDVIMFDVDSKDPTLGMSCPPPAFVAQPFLQKVKSILTPEGVFILNLVCRDLGLKD
                     SVLAGLKAVFPLLYVRRIEGEVNEILFCQPHPERKLATPELLEMAQALEQTLRKPGKG
                     WDDTYVLSDMLKTVKIV"
     misc_feature    417..725
                     /gene="EEF1AKNMT"
                     /note="Methyltransferase domain; Region: Methyltransf_25;
                     pfam13649"
                     /db_xref="CDD:463945"
     misc_feature    <1776..2180
                     /gene="EEF1AKNMT"
                     /note="Spermidine synthase (polyamine
                     aminopropyltransferase) [Amino acid transport and
                     metabolism]; Region: SpeE; COG0421"
                     /db_xref="CDD:440190"
ORIGIN      
        1 aagccgccgg cgtgaggcga gcgcgttgca gccaatgacg tgccaggatg aaaatcactg
       61 accaatgagc tgctgagatg gtgtggacag ccaaccaatc gcgaagcctc gcacccggat
      121 ataattgccg gttctgaaac cgagctctga aaaagaaaga attcccgctg cggtgttcca
      181 gaaccagcgc gtggggaaac ccctcggatg gtaccgcaca gggagtagga gagtcttgaa
      241 gacgcagctc gagcagtggg aatatgaatc tcttacctaa aagccctaag gagtttggct
      301 ccattgacta ttgggagaag ttcttccagc agcggggaag gaaagctttc gagtggtatg
      361 gaacctacct ggaactgtgc gggttgctgc acaaatatat caagcccagg gaaaaggtgc
      421 tggtgattgg gtgtggtaac tcagagctaa gcgagcagct gtatgacgtg ggctatcagg
      481 atatagtgaa cattgacatc agtgaggttg tcatcaagca aatgaaggaa cgcaatgcca
      541 gccgacggcc ccagatgagc ttcttgaaga tggacatgac acagatggag tttcccgatg
      601 cctcattcca ggtggtgttg gacaagggca ccctggacgc tgtcctgaca gatgaggagg
      661 agaagaccct gcagcaggtg gacaggatgc tggctgaggt tggccgtgtc ctgcaggtgg
      721 gcggtcgcta cctctgcatc tccctggctc aggctcacgt cctgaagaaa gcagtgggtc
      781 acttctctcg ggaggggtgg atggtgaggg tgcaccaggt ggccaacagc caagaccagc
      841 tgttggaagc agagcctcgg ttctccttgc ctgtctttgc cttcatcatg accaagttca
      901 ggccggtccc tggctctgcc cttcagatct ttgagctgtg tgctcaggag cagggcaagc
      961 ctgtgcggct ggagagtgcc gagcggctgg ctgaggcggt gcgggagcgg cagcagtatg
     1021 cctggctgtg cagccagctg taccgcaagg ccgggctggg gagtgtgtct ctggacttgt
     1081 gcagtgggga cacgggggag ccacgctaca ccctccacgt ggtggacagc cccactgtga
     1141 aaccatcgcg ggacagtcat tttgccattt tcatcatccc ccagggtcgg gagaccgagt
     1201 ggctctttgg catggaggag ggccggaagc agctggcagc cagtgcgggc ttcaggaggc
     1261 tgatcacagt ggcccttcac cgaggtcagc agtacgaagg catggacagc atccaggccg
     1321 agctgtcggc cagagtcatg gagctggccc cggccgggat gcccgcccag cagcaggtac
     1381 ccttcctgtc tgttggtggg gacatcgggg tccggactgt tcagcaccaa gactgcagcc
     1441 ctttgagtgg cgactacgtc atcgaggatg tgcaggggga tgacaagcgc tactttcggc
     1501 ggctgatctt cctcagcaac aggaacgtgg tgcagtcaga agccaggctg ctgaaggatg
     1561 tgtctcacag agcccagaag aaacggaaaa aggacaggaa gaagcagcgg cctgctgata
     1621 ctccagagga cctccctgca gctccggggc agtccattga taagagttac ctgtgctgtg
     1681 aacaccataa agccatgatt gccggccttg ccctgctgag aaacccggag ctgctcctag
     1741 agaccccact gggattgttg gtggtaggcc tgggtggggg cagcctcccc ctttttgtcc
     1801 acgatcattt cccaaagtcc tgcatcgatg ctgtggagat cgacccctcc atgttgcaag
     1861 tggccactca gtggtttggc ttctcccaga gtgaccgtat gaaggtccac atcgcagatg
     1921 gcctggacta tattaccagc ctggcagaag aagaagcacg acgtcactac gatgtcataa
     1981 tgtttgatgt ggacagtaag gacccaaccc tgggaatgag ttgtccaccc ccagcgtttg
     2041 tggcccagcc ttttctgcag aaggtcaaaa gcatcttgac tcctgaaggt gtctttatcc
     2101 tcaacctcgt gtgccgagac ctagggctaa aggactcagt gctggctggg ctcaaggcgg
     2161 tgttccccct cctgtatgtc cggcgaattg agggtgaagt aaacgagatc ctgttctgtc
     2221 agccgcaccc tgagcggaaa cttgccacgc cagagctgct ggaaatggcc caggccttgg
     2281 agcaaaccct gaggaagcct ggaaagggct gggatgacac atacgtcctg tcagacatgc
     2341 tcaaaactgt gaagattgtg tgattgtcag gaccaggcag ttccctcagc ttcctgccag
     2401 actgaccttg ggctcctggc ctaccagaga ttgaagaaat ataatgcaca atacttttta
     2461 agccttgtat ttttcttagt ttcatactca cctgcatgcg acctcctgct tggtgaggtt
     2521 gcctgaagat ctgggaaaat aaaaaagtcc tttccatcc
//
LOCUS       XM_032650096            3422 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 4
            (VAMP4), transcript variant X1, mRNA.
ACCESSION   XM_032650096
VERSION     XM_032650096.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3422
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3422
                     /gene="VAMP4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 91% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762733"
     CDS             422..865
                     /gene="VAMP4"
                     /codon_start=1
                     /product="vesicle-associated membrane protein 4 isoform
                     X1"
                     /protein_id="XP_032505987.1"
                     /db_xref="GeneID:116762733"
                     /translation="MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGP
                     RFGPRNEKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS
                     KQLRRQMWWRGCKIKAIMALVAVILLLVIISKYLLDYKFGGCHLF"
     misc_feature    569..769
                     /gene="VAMP4"
                     /note="SNARE motif of VAMP4; Region: R-SNARE_VAMP4;
                     cd15869"
                     /db_xref="CDD:277222"
     misc_feature    order(575..580,587..592,596..613,617..622,629..634,
                     638..643,650..655,662..667,671..676,680..685,689..697,
                     701..709,713..718,722..730,734..739,743..751)
                     /gene="VAMP4"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277222"
     misc_feature    650..652
                     /gene="VAMP4"
                     /note="zero layer; other site"
                     /db_xref="CDD:277222"
ORIGIN      
        1 tcagagcttc caccacctcc cctgaacttc cgacctccgc ttgggacctc aggagcccgc
       61 ggctgttgtt cctcccttaa agcacaaaat catcccgggg atccaaactt cgcgtccgct
      121 agggcctcta ggtagagagc ggagggggga atcgactccc tcgacgatct ctgcggcctg
      181 gacccgctcc ctccgcctgg cgccaggctg cggagcgccg agcggctcga tgagcggggg
      241 tgcagctgcg gcggagcggc aggcgccggg tccgcgccta ctgtcttccc cctcgccgct
      301 ttcttcctcc gcccgcccag tcctgcccat ccccggagag ctgcccggag ctccccggga
      361 gactcaggtg gtgaagactt attctgctga gaagtagaag agtacttctt cactaaaaaa
      421 gatgcctccc aagtttaagc gccacctaaa tgatgatgat gtcactggtt ctgtgaaaag
      481 tgaaaggaga aatcttttgg aagatgattc agatgaagaa gaggactttt ttctaagggg
      541 accatctgga ccaagatttg gacctagaaa tgaaaaaatt aagcatgttc agaaccaggt
      601 ggatgaagtc attgatgtca tgcaagaaaa tattacaaag gtaatagaaa gaggggagag
      661 actagatgaa ctacaggaca aatcagaaag cctatcggat aatgcaactg cttttagcaa
      721 cagatccaaa caacttcgaa ggcaaatgtg gtggcgtgga tgcaaaataa aagccatcat
      781 ggctttggtt gctgttatcc ttttgttagt gattatcagt aagtatttac tggattataa
      841 atttgggggg tgtcatttgt tttgaagttc atttaaattt ccttttaatt tatattcagt
      901 tgacgtagca tgactaatgt caggattgag taatgacttc tgactccagt aaggagctct
      961 taacctcgaa tctgtagctc tctgaaaatg cacataaatt gtatgtaaaa ttttatgtga
     1021 atatgtatat gtacagtttt atggtgagag tatatctttc atcagattct caaagagaac
     1081 ctctgtccta ccctccaccc ctacccctgc aaaggcaggg ctaagtgatt tgtttaaggc
     1141 caaatatggc tactattaca ctcaggacca taacacacat tttctattta tttttaactt
     1201 ttagatatgg caacttgcat ttcataatat tgtgtttgaa ggaaaatcca gataaattct
     1261 ccagatgata atttttcttt tgggtttgag cttcatttca gtcattgaaa cataactctt
     1321 gcccttcctt tttcccctta atattctttt taaagtcaga tcattcaaaa aaaatttttt
     1381 tagtgtagtt gatttacatt gttgtgttag tttcaggtat acagcaaagt gattcagtta
     1441 tatattattc cagattattt tccattatag gttattacaa gatattgaat acagttccct
     1501 gtgctacata gtaggtcctt gttgcttatc tttttaagta tagtatcttg tatctgttaa
     1561 tcccgtattc ctaatctatc cctccccctc ccctttcctc tttgataacc agaagtttgt
     1621 tttctatgac tgtgagcctg tttctgtttt gtatacggat tcatatgtat tattttttag
     1681 attccacata caagtgatac catatatttg tctttctttg gtcagatcat tcttaatatc
     1741 tccttttctc caaagcttct ttatctctgt ttacagggat tttataaaga tttggaaagc
     1801 atctcagaat agccatttga aaaattccat ggtgatactc tttttaaaca gaaaaaagat
     1861 tttgttctaa agaaaaagtc agtcctcatc atttgtggag tctgtgtttg tgacttcacc
     1921 tactagctaa cattgatcag ttaccccaat gctttcggag tcattggcag atgcagtcag
     1981 agaagcgaat gttagtgcac agtttctcac atttttgtgt gtcttgttga tgcttttgct
     2041 gtttaaaaag gcccccaagt atactggtgc tgcagtgctg gctagtgttg ctgagcacag
     2101 caaggctgtg atgtgtcttg tggaggaaat acacgtgtta gatgagcttt gttcaggcgt
     2161 gagtgacagc actgttggcc aggagttcag tgttaataag ccagcagtat atagtaaata
     2221 aggtgtcttc acacagaaac atgtaaaaca aggttatgta tggattggtt gtcaaaaatg
     2281 ttgtagcaag aggctggcag ggatttaagc ctgcgtttcc cctcagagca gtggttcagt
     2341 gtttactcat tcagtgtttg tggtgacttt atagaacata actactgcca gtaccaagaa
     2401 tcaacccgtg gaatgttgaa taacataaag aagaaaataa aatccaactg ttctcttacc
     2461 acacagagat agctactatt aatataacta ttgtatatac tttaagtctt ttcctattaa
     2521 tatataaaca tgtttttcaa aaactaagat catatgtata ctttctaata aatatattgt
     2581 aaatattttc ctgttattaa atattttaaa agtattttag ctgctttatg ctatggttat
     2641 atattaatct atttgatcaa aatgctaatg tttgttagac atttaggttc atatttttgc
     2701 ttcttcattc ccatttgtta tctatcattt cagataaaag ttgtcctcat taactatttt
     2761 caaaatggac acagctacat ttaggagtat tgtttctaac aaagcatatg aatctgattt
     2821 tgatgtttct ttttcatttt ttctcttgca gttcttatag ttgtgaaata ccgtacttga
     2881 tttgatgaca gatcttcatt aaacaaaatc taggacaata ataataaaag actgctgcat
     2941 aatttaaatg aaacccatgt atataacttt caaagcttct ttttcaagaa actaagaggc
     3001 aagtatcact tcaaattgga gcattgagaa tgtcccatta tcttcttccc ttccaacaaa
     3061 gtgtgctttt aataattatg tttaaggcgg ggctgccctg gtggcgcagt ggttgagagt
     3121 ccacctgccg atgcagggga cacgagttca tgccctggtc cgggaggatc ccacatgccg
     3181 cggagcggct gggcccatga gccatggacg ctgagcctgc gcgtccggag cctacgctct
     3241 gcaacgagag aggccacaac agtgagaggc ccgcataccg caaaaaaaaa aaagaaaaaa
     3301 aaaattacgt ttaaggcaaa gataaccagc ctcgattttg ccatattcca agggtctaat
     3361 ttgaaactag atacttgcca gttcattatt tgtatatata gttaaacact gataatgata
     3421 tt
//
LOCUS       XM_032650106            1378 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 4
            (VAMP4), transcript variant X2, mRNA.
ACCESSION   XM_032650106
VERSION     XM_032650106.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1378
                     /gene="VAMP4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762733"
     CDS             411..836
                     /gene="VAMP4"
                     /codon_start=1
                     /product="vesicle-associated membrane protein 4 isoform
                     X2"
                     /protein_id="XP_032505997.1"
                     /db_xref="GeneID:116762733"
                     /translation="MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGP
                     RFGPRNEKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS
                     KQLRRQMWWRGCKIKAIMALVAVILLLVIIILIVVKYRT"
     misc_feature    558..758
                     /gene="VAMP4"
                     /note="SNARE motif of VAMP4; Region: R-SNARE_VAMP4;
                     cd15869"
                     /db_xref="CDD:277222"
     misc_feature    order(564..569,576..581,585..602,606..611,618..623,
                     627..632,639..644,651..656,660..665,669..674,678..686,
                     690..698,702..707,711..719,723..728,732..740)
                     /gene="VAMP4"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277222"
     misc_feature    639..641
                     /gene="VAMP4"
                     /note="zero layer; other site"
                     /db_xref="CDD:277222"
ORIGIN      
        1 accacctccc ctgaacttcc gacctccgct tgggacctca ggagcccgcg gctgttgttc
       61 ctcccttaaa gcacaaaatc atcccgggga tccaaacttc gcgtccgcta gggcctctag
      121 gtagagagcg gaggggggaa tcgactccct cgacgatctc tgcggcctgg acccgctccc
      181 tccgcctggc gccaggctgc ggagcgccga gcggctcgat gagcgggggt gcagctgcgg
      241 cggagcggca ggcgccgggt ccgcgcctac tgtcttcccc ctcgccgctt tcttcctccg
      301 cccgcccagt cctgcccatc cccggagagc tgcccggagc tccccgggag actcaggtgg
      361 tgaagactta ttctgctgag aagtagaaga gtacttcttc actaaaaaag atgcctccca
      421 agtttaagcg ccacctaaat gatgatgatg tcactggttc tgtgaaaagt gaaaggagaa
      481 atcttttgga agatgattca gatgaagaag aggacttttt tctaagggga ccatctggac
      541 caagatttgg acctagaaat gaaaaaatta agcatgttca gaaccaggtg gatgaagtca
      601 ttgatgtcat gcaagaaaat attacaaagg taatagaaag aggggagaga ctagatgaac
      661 tacaggacaa atcagaaagc ctatcggata atgcaactgc ttttagcaac agatccaaac
      721 aacttcgaag gcaaatgtgg tggcgtggat gcaaaataaa agccatcatg gctttggttg
      781 ctgttatcct tttgttagtg attatcattc ttatagttgt gaaataccgt acttgatttg
      841 atgacagatc ttcattaaac aaaatctagg acaataataa taaaagactg ctgcataatt
      901 taaatgaaac ccatgtatat aactttcaaa gcttcttttt caagaaacta agaggcaagt
      961 atcacttcaa attggagcat tgagaatgtc ccattatctt cttcccttcc aacaaagtgt
     1021 gcttttaata attatgttta aggcggggct gccctggtgg cgcagtggtt gagagtccac
     1081 ctgccgatgc aggggacacg agttcatgcc ctggtccggg aggatcccac atgccgcgga
     1141 gcggctgggc ccatgagcca tggacgctga gcctgcgcgt ccggagccta cgctctgcaa
     1201 cgagagaggc cacaacagtg agaggcccgc ataccgcaaa aaaaaaaaag aaaaaaaaaa
     1261 ttacgtttaa ggcaaagata accagcctcg attttgccat attccaaggg tctaatttga
     1321 aactagatac ttgccagttc attatttgta tatatagtta aacactgata atgatatt
//
LOCUS       XM_032650113            1614 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 4
            (VAMP4), transcript variant X3, mRNA.
ACCESSION   XM_032650113
VERSION     XM_032650113.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1614
                     /gene="VAMP4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762733"
     CDS             647..1072
                     /gene="VAMP4"
                     /codon_start=1
                     /product="vesicle-associated membrane protein 4 isoform
                     X2"
                     /protein_id="XP_032506004.1"
                     /db_xref="GeneID:116762733"
                     /translation="MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGP
                     RFGPRNEKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS
                     KQLRRQMWWRGCKIKAIMALVAVILLLVIIILIVVKYRT"
     misc_feature    794..994
                     /gene="VAMP4"
                     /note="SNARE motif of VAMP4; Region: R-SNARE_VAMP4;
                     cd15869"
                     /db_xref="CDD:277222"
     misc_feature    order(800..805,812..817,821..838,842..847,854..859,
                     863..868,875..880,887..892,896..901,905..910,914..922,
                     926..934,938..943,947..955,959..964,968..976)
                     /gene="VAMP4"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277222"
     misc_feature    875..877
                     /gene="VAMP4"
                     /note="zero layer; other site"
                     /db_xref="CDD:277222"
ORIGIN      
        1 caccacctcc cctgaacttc cgacctccgc ttgggacctc aggagcccgc ggctgttgtt
       61 cctcccttaa agcacaaaat catcccgggg atccaaactt cgcgtccgct agggcctcta
      121 ggtagagagc ggagggggga atcgactccc tcgacgatct ctgcggcctg gacccgctcc
      181 ctccgcctgg cgccaggctg cggagcgccg agcggctcga tgagcggggg tgcagctgcg
      241 gcggagcggc aggcgccggg tccgcgccta ctgtcttccc cctcgccgct ttcttcctcc
      301 gcccgcccag tcctgcccat ccccggagag ctgcccggag ctccccggga gactcaggtt
      361 ttgtgaataa catctccagg ctgtgtccat ccaagtcact tatttccgtg aaactgcacc
      421 aaccaagact gctgatgaga gatgaggaag aggagtcaga aagggaacgc aggctgggaa
      481 aagggaagcc tctgcccaga ttcaagcttt ttgtgaaatg aaatactagg ggggttggtg
      541 tgcttgttgt ttgcataaag caaaatagaa gccaacattt gctaaacaac aggtggtgaa
      601 gacttattct gctgagaagt agaagagtac ttcttcacta aaaaagatgc ctcccaagtt
      661 taagcgccac ctaaatgatg atgatgtcac tggttctgtg aaaagtgaaa ggagaaatct
      721 tttggaagat gattcagatg aagaagagga cttttttcta aggggaccat ctggaccaag
      781 atttggacct agaaatgaaa aaattaagca tgttcagaac caggtggatg aagtcattga
      841 tgtcatgcaa gaaaatatta caaaggtaat agaaagaggg gagagactag atgaactaca
      901 ggacaaatca gaaagcctat cggataatgc aactgctttt agcaacagat ccaaacaact
      961 tcgaaggcaa atgtggtggc gtggatgcaa aataaaagcc atcatggctt tggttgctgt
     1021 tatccttttg ttagtgatta tcattcttat agttgtgaaa taccgtactt gatttgatga
     1081 cagatcttca ttaaacaaaa tctaggacaa taataataaa agactgctgc ataatttaaa
     1141 tgaaacccat gtatataact ttcaaagctt ctttttcaag aaactaagag gcaagtatca
     1201 cttcaaattg gagcattgag aatgtcccat tatcttcttc ccttccaaca aagtgtgctt
     1261 ttaataatta tgtttaaggc ggggctgccc tggtggcgca gtggttgaga gtccacctgc
     1321 cgatgcaggg gacacgagtt catgccctgg tccgggagga tcccacatgc cgcggagcgg
     1381 ctgggcccat gagccatgga cgctgagcct gcgcgtccgg agcctacgct ctgcaacgag
     1441 agaggccaca acagtgagag gcccgcatac cgcaaaaaaa aaaaagaaaa aaaaaattac
     1501 gtttaaggca aagataacca gcctcgattt tgccatattc caagggtcta atttgaaact
     1561 agatacttgc cagttcatta tttgtatata tagttaaaca ctgataatga tatt
//
LOCUS       XM_032650123            1505 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 4
            (VAMP4), transcript variant X4, mRNA.
ACCESSION   XM_032650123
VERSION     XM_032650123.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1505
                     /gene="VAMP4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762733"
     CDS             538..963
                     /gene="VAMP4"
                     /codon_start=1
                     /product="vesicle-associated membrane protein 4 isoform
                     X2"
                     /protein_id="XP_032506014.1"
                     /db_xref="GeneID:116762733"
                     /translation="MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGP
                     RFGPRNEKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS
                     KQLRRQMWWRGCKIKAIMALVAVILLLVIIILIVVKYRT"
     misc_feature    685..885
                     /gene="VAMP4"
                     /note="SNARE motif of VAMP4; Region: R-SNARE_VAMP4;
                     cd15869"
                     /db_xref="CDD:277222"
     misc_feature    order(691..696,703..708,712..729,733..738,745..750,
                     754..759,766..771,778..783,787..792,796..801,805..813,
                     817..825,829..834,838..846,850..855,859..867)
                     /gene="VAMP4"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277222"
     misc_feature    766..768
                     /gene="VAMP4"
                     /note="zero layer; other site"
                     /db_xref="CDD:277222"
ORIGIN      
        1 caccacctcc cctgaacttc cgacctccgc ttgggacctc aggagcccgc ggctgttgtt
       61 cctcccttaa agcacaaaat catcccgggg atccaaactt cgcgtccgct agggcctcta
      121 ggtagagagc ggagggggga atcgactccc tcgacgatct ctgcggcctg gacccgctcc
      181 ctccgcctgg cgccaggctg cggagcgccg agcggctcga tgagcggggg tgcagctgcg
      241 gcggagcggc aggcgccggg tccgcgccta ctgtcttccc cctcgccgct ttcttcctcc
      301 gcccgcccag tcctgcccat ccccggagag ctgcccggag ctccccggga gactcaggtt
      361 ttgtgaataa catctccagg ctgtgtccat ccaagtcact tatttccgtg aaactgcacc
      421 aaccaagact gctgatgaga gatgaggaag aggagtcaga aagggaacgc aggctgggaa
      481 aaggtggtga agacttattc tgctgagaag tagaagagta cttcttcact aaaaaagatg
      541 cctcccaagt ttaagcgcca cctaaatgat gatgatgtca ctggttctgt gaaaagtgaa
      601 aggagaaatc ttttggaaga tgattcagat gaagaagagg acttttttct aaggggacca
      661 tctggaccaa gatttggacc tagaaatgaa aaaattaagc atgttcagaa ccaggtggat
      721 gaagtcattg atgtcatgca agaaaatatt acaaaggtaa tagaaagagg ggagagacta
      781 gatgaactac aggacaaatc agaaagccta tcggataatg caactgcttt tagcaacaga
      841 tccaaacaac ttcgaaggca aatgtggtgg cgtggatgca aaataaaagc catcatggct
      901 ttggttgctg ttatcctttt gttagtgatt atcattctta tagttgtgaa ataccgtact
      961 tgatttgatg acagatcttc attaaacaaa atctaggaca ataataataa aagactgctg
     1021 cataatttaa atgaaaccca tgtatataac tttcaaagct tctttttcaa gaaactaaga
     1081 ggcaagtatc acttcaaatt ggagcattga gaatgtccca ttatcttctt cccttccaac
     1141 aaagtgtgct tttaataatt atgtttaagg cggggctgcc ctggtggcgc agtggttgag
     1201 agtccacctg ccgatgcagg ggacacgagt tcatgccctg gtccgggagg atcccacatg
     1261 ccgcggagcg gctgggccca tgagccatgg acgctgagcc tgcgcgtccg gagcctacgc
     1321 tctgcaacga gagaggccac aacagtgaga ggcccgcata ccgcaaaaaa aaaaaagaaa
     1381 aaaaaaatta cgtttaaggc aaagataacc agcctcgatt ttgccatatt ccaagggtct
     1441 aatttgaaac tagatacttg ccagttcatt atttgtatat atagttaaac actgataatg
     1501 atatt
//
LOCUS       XM_032650131            1488 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 4
            (VAMP4), transcript variant X5, mRNA.
ACCESSION   XM_032650131
VERSION     XM_032650131.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1488
                     /gene="VAMP4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116762733"
     CDS             521..946
                     /gene="VAMP4"
                     /codon_start=1
                     /product="vesicle-associated membrane protein 4 isoform
                     X2"
                     /protein_id="XP_032506022.1"
                     /db_xref="GeneID:116762733"
                     /translation="MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGP
                     RFGPRNEKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS
                     KQLRRQMWWRGCKIKAIMALVAVILLLVIIILIVVKYRT"
     misc_feature    668..868
                     /gene="VAMP4"
                     /note="SNARE motif of VAMP4; Region: R-SNARE_VAMP4;
                     cd15869"
                     /db_xref="CDD:277222"
     misc_feature    order(674..679,686..691,695..712,716..721,728..733,
                     737..742,749..754,761..766,770..775,779..784,788..796,
                     800..808,812..817,821..829,833..838,842..850)
                     /gene="VAMP4"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277222"
     misc_feature    749..751
                     /gene="VAMP4"
                     /note="zero layer; other site"
                     /db_xref="CDD:277222"
ORIGIN      
        1 cgggggcagc cttctcagct ctgggctttc cagccttgga agagagctcc cgggccccag
       61 gctgtttgtt cctttcgtct ctgagctccc attctgagca cgagccacat aaggaataaa
      121 tggaaaagcc agataagtac caaaagcatc tctataaagc aatccaagag ctgttggagc
      181 aacaagacta gaggaaccaa gattccagag gaggaactgc aaaatggaga gagagattgg
      241 gctgaactct ttcagtatta tttacactgt gagccatgaa attcaatgag gaatggagcc
      301 tggcatcaga aaatgttaac cagtgaatct gaataaagtg tttgcaagag ctctttgtat
      361 ttattctttg gagagaagat aacagcaaca aaatattgaa acctggaaag tatatgaatc
      421 agtggcaatt atcttagcca acttgagaga caggaatcct aagcaggtgg tgaagactta
      481 ttctgctgag aagtagaaga gtacttcttc actaaaaaag atgcctccca agtttaagcg
      541 ccacctaaat gatgatgatg tcactggttc tgtgaaaagt gaaaggagaa atcttttgga
      601 agatgattca gatgaagaag aggacttttt tctaagggga ccatctggac caagatttgg
      661 acctagaaat gaaaaaatta agcatgttca gaaccaggtg gatgaagtca ttgatgtcat
      721 gcaagaaaat attacaaagg taatagaaag aggggagaga ctagatgaac tacaggacaa
      781 atcagaaagc ctatcggata atgcaactgc ttttagcaac agatccaaac aacttcgaag
      841 gcaaatgtgg tggcgtggat gcaaaataaa agccatcatg gctttggttg ctgttatcct
      901 tttgttagtg attatcattc ttatagttgt gaaataccgt acttgatttg atgacagatc
      961 ttcattaaac aaaatctagg acaataataa taaaagactg ctgcataatt taaatgaaac
     1021 ccatgtatat aactttcaaa gcttcttttt caagaaacta agaggcaagt atcacttcaa
     1081 attggagcat tgagaatgtc ccattatctt cttcccttcc aacaaagtgt gcttttaata
     1141 attatgttta aggcggggct gccctggtgg cgcagtggtt gagagtccac ctgccgatgc
     1201 aggggacacg agttcatgcc ctggtccggg aggatcccac atgccgcgga gcggctgggc
     1261 ccatgagcca tggacgctga gcctgcgcgt ccggagccta cgctctgcaa cgagagaggc
     1321 cacaacagtg agaggcccgc ataccgcaaa aaaaaaaaag aaaaaaaaaa ttacgtttaa
     1381 ggcaaagata accagcctcg attttgccat attccaaggg tctaatttga aactagatac
     1441 ttgccagttc attatttgta tatatagtta aacactgata atgatatt
//
LOCUS       XM_032650140            1344 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 4
            (VAMP4), transcript variant X6, mRNA.
ACCESSION   XM_032650140
VERSION     XM_032650140.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1344
                     /gene="VAMP4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116762733"
     CDS             377..802
                     /gene="VAMP4"
                     /codon_start=1
                     /product="vesicle-associated membrane protein 4 isoform
                     X2"
                     /protein_id="XP_032506031.1"
                     /db_xref="GeneID:116762733"
                     /translation="MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGP
                     RFGPRNEKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS
                     KQLRRQMWWRGCKIKAIMALVAVILLLVIIILIVVKYRT"
     misc_feature    524..724
                     /gene="VAMP4"
                     /note="SNARE motif of VAMP4; Region: R-SNARE_VAMP4;
                     cd15869"
                     /db_xref="CDD:277222"
     misc_feature    order(530..535,542..547,551..568,572..577,584..589,
                     593..598,605..610,617..622,626..631,635..640,644..652,
                     656..664,668..673,677..685,689..694,698..706)
                     /gene="VAMP4"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277222"
     misc_feature    605..607
                     /gene="VAMP4"
                     /note="zero layer; other site"
                     /db_xref="CDD:277222"
ORIGIN      
        1 cgggggcagc cttctcagct ctgggctttc cagccttgga agagagctcc cgggccccag
       61 gctgtttgtt cctttcgtct ctgagctccc attctgagca cgagccacat aaggaataaa
      121 tggaaaagcc agataagtac caaaagcatc tctataaagc aatccaagag ctgttggagc
      181 aacaagacta gaggaaccaa gattccagag gaggaactgc aaaatggaga gaagataaca
      241 gcaacaaaat attgaaacct ggaaagtata tgaatcagtg gcaattatct tagccaactt
      301 gagagacagg aatcctaagc aggtggtgaa gacttattct gctgagaagt agaagagtac
      361 ttcttcacta aaaaagatgc ctcccaagtt taagcgccac ctaaatgatg atgatgtcac
      421 tggttctgtg aaaagtgaaa ggagaaatct tttggaagat gattcagatg aagaagagga
      481 cttttttcta aggggaccat ctggaccaag atttggacct agaaatgaaa aaattaagca
      541 tgttcagaac caggtggatg aagtcattga tgtcatgcaa gaaaatatta caaaggtaat
      601 agaaagaggg gagagactag atgaactaca ggacaaatca gaaagcctat cggataatgc
      661 aactgctttt agcaacagat ccaaacaact tcgaaggcaa atgtggtggc gtggatgcaa
      721 aataaaagcc atcatggctt tggttgctgt tatccttttg ttagtgatta tcattcttat
      781 agttgtgaaa taccgtactt gatttgatga cagatcttca ttaaacaaaa tctaggacaa
      841 taataataaa agactgctgc ataatttaaa tgaaacccat gtatataact ttcaaagctt
      901 ctttttcaag aaactaagag gcaagtatca cttcaaattg gagcattgag aatgtcccat
      961 tatcttcttc ccttccaaca aagtgtgctt ttaataatta tgtttaaggc ggggctgccc
     1021 tggtggcgca gtggttgaga gtccacctgc cgatgcaggg gacacgagtt catgccctgg
     1081 tccgggagga tcccacatgc cgcggagcgg ctgggcccat gagccatgga cgctgagcct
     1141 gcgcgtccgg agcctacgct ctgcaacgag agaggccaca acagtgagag gcccgcatac
     1201 cgcaaaaaaa aaaaagaaaa aaaaaattac gtttaaggca aagataacca gcctcgattt
     1261 tgccatattc caagggtcta atttgaaact agatacttgc cagttcatta tttgtatata
     1321 tagttaaaca ctgataatga tatt
//
LOCUS       XM_032650154            5264 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PBX homeobox 1 (PBX1), transcript variant
            X1, mRNA.
ACCESSION   XM_032650154
VERSION     XM_032650154.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5264
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5264
                     /gene="PBX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762754"
     CDS             255..1547
                     /gene="PBX1"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription factor 1
                     isoform X1"
                     /protein_id="XP_032506045.1"
                     /db_xref="GeneID:116762754"
                     /translation="MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIG
                     DILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTVLSIRGAQEEEPTD
                     PQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGAGSDNSVEHSDYRAKLSQIRQI
                     YHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLKQS
                     TCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT
                     VSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNVSAHGSQANSPSTPNSAGS
                     SSSFNMSNSGDLFMSVQSLNGDSYQGAQVGANVQSQVDTLRHVISQTGGYSDGLAASQ
                     MYSPQGISANGGWQDATTPSSVTSPTEGPGSVHSDTSN"
     misc_feature    378..950
                     /gene="PBX1"
                     /note="PBC domain; Region: PBC; pfam03792"
                     /db_xref="CDD:461052"
     misc_feature    954..1136
                     /gene="PBX1"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(954..968,972..974,1032..1034,1050..1052,1089..1091,
                     1095..1100,1107..1112,1116..1124,1128..1133)
                     /gene="PBX1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(960..962,969..971,1098..1100,1107..1112,1119..1121)
                     /gene="PBX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
        1 tccccctgcc ttcctctcct ttctcccgat caatgcatat ttgcaaaagg attaagccac
       61 agatataagc gccgggagcc catttctacc ttgcaaagga taccggactg aaaaaccaaa
      121 agccagctct gatttctttt cgtcaagtgg gaaggatttg aagacagctt gaaggataaa
      181 aagccttggt gcttcccagg agccgagccg aggagcagaa gaggaagagc cgggggctgc
      241 cgttgccttt ggagatggac gagcagccca ggctgatgca ttcccatgct ggggtcggga
      301 tggccggaca ccccggcctg tcccagcact tgcaggatgg ggccggaggg accgaggggg
      361 agggcgggag gaagcaggac attggagaca ttttacagca aattatgacc atcacagacc
      421 agagtttgga tgaggcgcag gccagaaaac atgctttaaa ctgccacaga atgaagcctg
      481 ccttgtttaa tgtgttgtgt gaaatcaaag aaaaaacagt tttgagtatc cggggagcgc
      541 aggaagaaga gccaacagac ccccagctga tgcgactgga caacatgctg ctggcggagg
      601 gggtggccgg gccagagaag ggtggcggct cggccgcggc ggctgcggcg gcggcagctt
      661 ctggaggcgc cggttccgac aattcggtgg agcattctga ttacagagcc aaactctcgc
      721 agatcagaca aatctaccac acggagctgg agaaatacga gcaggcatgt aatgagttca
      781 ccacccacgt gatgaatctc ctgcgagagc aaagccggac caggcccatc tccccgaagg
      841 agatcgagcg gatggtcagt atcatccacc gcaagttcag ctccatccag atgcagctga
      901 agcagagcac gtgtgaggcc gtcatgatcc tgcgttcccg gtttctggat gcgcggcgga
      961 agagacggaa tttcaacaag caagcgacgg aaatcctgaa tgaatatttc tattcccatc
     1021 tcagcaaccc ctaccccagt gaggaagcca aagaggagtt agccaagaag tgtggtatca
     1081 cagtgtccca ggtatcaaac tggtttggaa ataaacgaat ccggtacaag aagaacatag
     1141 gtaaatttca agaggaagcc aatatttatg ctgccaaaac agctgtcact gctaccaatg
     1201 tgtcagccca tggaagccaa gctaactcac cgtcaactcc caattcagct ggttcttcca
     1261 gttcttttaa catgtcaaac tctggagatt tgttcatgag cgtgcagtca ctcaatgggg
     1321 attcttacca aggggcccag gttggagcca acgtgcaatc acaggtggat acccttcgcc
     1381 atgttatcag ccagacagga ggatacagtg acggactcgc agccagtcag atgtacagtc
     1441 cgcagggcat cagtgctaat ggaggttggc aggatgctac taccccttca tcagtgacct
     1501 cccctacaga aggccctggc agtgttcact ctgatacctc caactgatct cccagcagtc
     1561 gcatcccggc tgaccctgtg ctccagtcgg ggccgggcca ggagggaggg tttctcaacg
     1621 ctgaagcggt cagactggag gtcgaagcaa tcagcacaca caataagagt ctctttctct
     1681 tctcttcttt gggatgctgt ttcagccaat ctggacactt ctttatactc tcttcccttt
     1741 ttttctgggt agaagccacc cttccctgcc tccagctgtc agcctggtgt ccatcatctt
     1801 ccctgcccct ttccctctgt cctagactcc ctgggtcccc gccctctatt acatccctga
     1861 aggatatttt caacaattag aggaatttaa agaggaaaaa aaaaatacaa agaaaataat
     1921 aaaagtgttg gtatgttttc atgctggtgg tttgaggggc cagacttacc tccctgggat
     1981 cccttgctcc ctctgttaac aggcagtcct tctctgtttc tctcgttact ctcactacct
     2041 cttagcagga atacgccaca ttgccctact cattccaggc cgccctactt cctcttgctc
     2101 taacctcccc gggggcgatt ctgattagaa tacaattcct cctcttcctt ctcagcccca
     2161 ggtattcttt gggggctgcc tttgctgggc ttctagaagt gccacagttt ctggtttcac
     2221 ctctgctagc ttggttccca gcaggaagtc aggcagcaag agaagcttca aggaacacga
     2281 agggcagaat tcctagaggc ttttgcatct tcccaataac agctcttgct ttcagaggaa
     2341 cagtctctgg agaccgtgca ggaagtgatg ttcagaatct actgcaaaac caggtctgag
     2401 ttaggcatgg tggtgaatgc atcactaagg agtagaaggt tcttatcctg ccacccttta
     2461 cctatcccct ttatctctct ctctctctct ctctctctct cacacacaca cacacacaca
     2521 caagcataca aatcaggcac gtgccacatt cagataccta tattagtaac catagcatta
     2581 taccttgtga gcccaagaga gggaattaac agctctgagt gaaggtcact gacacagaga
     2641 agcagcacgt acctggggcc tccaggcccc cagcatgcac gcaccagaac gacacacaca
     2701 ggactcgatc acgatgaagc ccaggtttcc agtataaact aatcctgttc tcaccacctc
     2761 tggagctctc agggagccac acacagtact tacaaagtct acgatggatt tggttctgtt
     2821 ttgtttttgt gttcacgtta gggacgttgt attaattatc cgaagtgtta tatggctcca
     2881 acattcttgt cctggaggag aaagatgtat aagaacatgg cttgggcaaa ctttttgctt
     2941 gcttactttg aagacctgag agtgatggag agcagggagg tcatgctttc agtgaaatca
     3001 tccatgattt ttattccctg gtaatatctg agagtgaaga gtaggtacta gaaagctgtc
     3061 ctcatgtcgc ctgtgctcac attcttcata gccaactgtg ccggcaataa acatggcagc
     3121 tctgtcactt gactaagtgg gaggtggtgc ctcattttct tcatctgtaa aatgggggtt
     3181 attacgcctg gctcaccaag aggcttgtga gagaccgaag aagttgattt cattcgtatc
     3241 caatctgtaa ttgtgaagtc aggggaagaa gcatccctaa gataaaccgg ttcatgccac
     3301 agagggacaa taaatggttt tctaacttct ggttaacatt agtaccctga ggtcatcagc
     3361 ctgatgacaa agagaagggt tagtgttgtt ccttctgttc gtttgttttg gtctgcttgg
     3421 tttcttagaa tagagatgtc tctaaattgg aagaaatggg acctggttct ctaagcttgt
     3481 acttgaatcc agtatgtggc cttgtaacta cttagtccct gtcacatcta ctatgtttga
     3541 gaggcctccg ggagaggtat aagaccctga ggggtgagag tggccagcta acaaggtcat
     3601 ggacattctg tatggcactt cagtaacgat tcgaaaatgt tcctgtgtgt gggtgttggg
     3661 aggtgggggg ttaacctaag gaactagaag gtatgtgtat ttgaaggaaa tgcaaaaagt
     3721 aaatatttgg caagatggca ttatgcctgg atgacggaga tcagtagaaa gactctcttc
     3781 taaccagtgc cacaatcaga gcagggcttg ataaagagga ttcctggaag gagccatcct
     3841 gtgaccattc tacagtgatt aaaaccagtg gagaactttg tgtgagtggc agggatctat
     3901 tgaaactacc cacagaggaa tatggtggga tcgcatcccc ctgattaggg gcaaagtaca
     3961 aaagggacac gtaagggttc tcttggaaac aggaagaatg attccagatt tgggttgaat
     4021 gattgccatt ttaagttgat gaaagagatc agagcagtgc tacctttgca caggcagtct
     4081 ctctccctgc agtagtttgc actgatcacc tctcaatgca tcttccccac ctagcacttc
     4141 atgcagtgct cttcgcatcc agtacctttc ccacgacttc ccccctcgcc tgcgatcaca
     4201 tccaacgtgg cggccaccac atctctttgc attaagcgaa gcatgagaac actggcagcg
     4261 gaagtttggg gatggaaagt agcgtgcctc tggaaataca gctccctggg aattcgtatt
     4321 aggtcaatcc tacagatacc aaaatgtgcc ccaagactcc ttcattttct gatggaagtg
     4381 ggagcgctcc attttccctg gcagatttcc cctgagaaat gatactagcc ctagggtttg
     4441 cccaccttgt aactcttcat cacatcctcc ttttcatccc taactcctcc ccctggcttg
     4501 gaattgactc ctgtgcggta cttttgccaa gtgacacctt tacatttatt tttcattttg
     4561 ctgtggtggt ggttctttat ttaccgtttg ccttttctct cacatatctt ccctgcccct
     4621 ctttccttct gagttttatt tttctgccca gaaaaacctg acttcgatac caaaaaaaga
     4681 tgaaactaca gaaactcaaa tttaaaaaaa aaaaccttaa aaaaacacaa aaaaatactc
     4741 aacgattctt tcagctttat taacattttc cattgtttct tgcgactcgt gtctcgttct
     4801 ttgtagtatt gatgatgaac atttgataat gaatgttctt gtatattcag ataaagaaaa
     4861 aaaaccaaaa aagcggtctg aatttaatag tgtttataat aaaaatttta aaaatgaccc
     4921 tcatagcacg caaaacagga tgggggattt cccctcttct ttctgtgaca atgcacatca
     4981 ttcctgcatt agtttttaac accgaactac ctacattcac catttccccc atttttcttt
     5041 tattttcttg catttgtgaa ttagttcaag aatgctagaa aagtgtcgag ttgtgcacat
     5101 ccatttcctg tttcacaatg tttaaaagtg acagtaattc attttgtaaa ctaaaaaaaa
     5161 aaaaggttgg aatagtgagc ataataggta cagcctaaca cgttattatg tttattaact
     5221 tcgagaccca gaaataaatt cttttctttt ctttcttctg ctct
//
LOCUS       XM_032650161            5219 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PBX homeobox 1 (PBX1), transcript variant
            X2, mRNA.
ACCESSION   XM_032650161
VERSION     XM_032650161.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5219
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5219
                     /gene="PBX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116762754"
     CDS             210..1502
                     /gene="PBX1"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription factor 1
                     isoform X1"
                     /protein_id="XP_032506052.1"
                     /db_xref="GeneID:116762754"
                     /translation="MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIG
                     DILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTVLSIRGAQEEEPTD
                     PQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGAGSDNSVEHSDYRAKLSQIRQI
                     YHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLKQS
                     TCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT
                     VSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNVSAHGSQANSPSTPNSAGS
                     SSSFNMSNSGDLFMSVQSLNGDSYQGAQVGANVQSQVDTLRHVISQTGGYSDGLAASQ
                     MYSPQGISANGGWQDATTPSSVTSPTEGPGSVHSDTSN"
     misc_feature    333..905
                     /gene="PBX1"
                     /note="PBC domain; Region: PBC; pfam03792"
                     /db_xref="CDD:461052"
     misc_feature    909..1091
                     /gene="PBX1"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(909..923,927..929,987..989,1005..1007,1044..1046,
                     1050..1055,1062..1067,1071..1079,1083..1088)
                     /gene="PBX1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(915..917,924..926,1053..1055,1062..1067,1074..1076)
                     /gene="PBX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
        1 tccccctgcc ttcctctcct ttctcccgat caatgcatat ttgcaaaagg attaagccac
       61 agatataagc gccgggagcc catttctacc ttgcaaagga taccggactg aaaaaccaaa
      121 agccagctct gatttctttt cgtcaagtgg gaaggagccg agccgaggag cagaagagga
      181 agagccgggg gctgccgttg cctttggaga tggacgagca gcccaggctg atgcattccc
      241 atgctggggt cgggatggcc ggacaccccg gcctgtccca gcacttgcag gatggggccg
      301 gagggaccga gggggagggc gggaggaagc aggacattgg agacatttta cagcaaatta
      361 tgaccatcac agaccagagt ttggatgagg cgcaggccag aaaacatgct ttaaactgcc
      421 acagaatgaa gcctgccttg tttaatgtgt tgtgtgaaat caaagaaaaa acagttttga
      481 gtatccgggg agcgcaggaa gaagagccaa cagaccccca gctgatgcga ctggacaaca
      541 tgctgctggc ggagggggtg gccgggccag agaagggtgg cggctcggcc gcggcggctg
      601 cggcggcggc agcttctgga ggcgccggtt ccgacaattc ggtggagcat tctgattaca
      661 gagccaaact ctcgcagatc agacaaatct accacacgga gctggagaaa tacgagcagg
      721 catgtaatga gttcaccacc cacgtgatga atctcctgcg agagcaaagc cggaccaggc
      781 ccatctcccc gaaggagatc gagcggatgg tcagtatcat ccaccgcaag ttcagctcca
      841 tccagatgca gctgaagcag agcacgtgtg aggccgtcat gatcctgcgt tcccggtttc
      901 tggatgcgcg gcggaagaga cggaatttca acaagcaagc gacggaaatc ctgaatgaat
      961 atttctattc ccatctcagc aacccctacc ccagtgagga agccaaagag gagttagcca
     1021 agaagtgtgg tatcacagtg tcccaggtat caaactggtt tggaaataaa cgaatccggt
     1081 acaagaagaa cataggtaaa tttcaagagg aagccaatat ttatgctgcc aaaacagctg
     1141 tcactgctac caatgtgtca gcccatggaa gccaagctaa ctcaccgtca actcccaatt
     1201 cagctggttc ttccagttct tttaacatgt caaactctgg agatttgttc atgagcgtgc
     1261 agtcactcaa tggggattct taccaagggg cccaggttgg agccaacgtg caatcacagg
     1321 tggataccct tcgccatgtt atcagccaga caggaggata cagtgacgga ctcgcagcca
     1381 gtcagatgta cagtccgcag ggcatcagtg ctaatggagg ttggcaggat gctactaccc
     1441 cttcatcagt gacctcccct acagaaggcc ctggcagtgt tcactctgat acctccaact
     1501 gatctcccag cagtcgcatc ccggctgacc ctgtgctcca gtcggggccg ggccaggagg
     1561 gagggtttct caacgctgaa gcggtcagac tggaggtcga agcaatcagc acacacaata
     1621 agagtctctt tctcttctct tctttgggat gctgtttcag ccaatctgga cacttcttta
     1681 tactctcttc cctttttttc tgggtagaag ccacccttcc ctgcctccag ctgtcagcct
     1741 ggtgtccatc atcttccctg cccctttccc tctgtcctag actccctggg tccccgccct
     1801 ctattacatc cctgaaggat attttcaaca attagaggaa tttaaagagg aaaaaaaaaa
     1861 tacaaagaaa ataataaaag tgttggtatg ttttcatgct ggtggtttga ggggccagac
     1921 ttacctccct gggatccctt gctccctctg ttaacaggca gtccttctct gtttctctcg
     1981 ttactctcac tacctcttag caggaatacg ccacattgcc ctactcattc caggccgccc
     2041 tacttcctct tgctctaacc tccccggggg cgattctgat tagaatacaa ttcctcctct
     2101 tccttctcag ccccaggtat tctttggggg ctgcctttgc tgggcttcta gaagtgccac
     2161 agtttctggt ttcacctctg ctagcttggt tcccagcagg aagtcaggca gcaagagaag
     2221 cttcaaggaa cacgaagggc agaattccta gaggcttttg catcttccca ataacagctc
     2281 ttgctttcag aggaacagtc tctggagacc gtgcaggaag tgatgttcag aatctactgc
     2341 aaaaccaggt ctgagttagg catggtggtg aatgcatcac taaggagtag aaggttctta
     2401 tcctgccacc ctttacctat cccctttatc tctctctctc tctctctctc tctctcacac
     2461 acacacacac acacacaagc atacaaatca ggcacgtgcc acattcagat acctatatta
     2521 gtaaccatag cattatacct tgtgagccca agagagggaa ttaacagctc tgagtgaagg
     2581 tcactgacac agagaagcag cacgtacctg gggcctccag gcccccagca tgcacgcacc
     2641 agaacgacac acacaggact cgatcacgat gaagcccagg tttccagtat aaactaatcc
     2701 tgttctcacc acctctggag ctctcaggga gccacacaca gtacttacaa agtctacgat
     2761 ggatttggtt ctgttttgtt tttgtgttca cgttagggac gttgtattaa ttatccgaag
     2821 tgttatatgg ctccaacatt cttgtcctgg aggagaaaga tgtataagaa catggcttgg
     2881 gcaaactttt tgcttgctta ctttgaagac ctgagagtga tggagagcag ggaggtcatg
     2941 ctttcagtga aatcatccat gatttttatt ccctggtaat atctgagagt gaagagtagg
     3001 tactagaaag ctgtcctcat gtcgcctgtg ctcacattct tcatagccaa ctgtgccggc
     3061 aataaacatg gcagctctgt cacttgacta agtgggaggt ggtgcctcat tttcttcatc
     3121 tgtaaaatgg gggttattac gcctggctca ccaagaggct tgtgagagac cgaagaagtt
     3181 gatttcattc gtatccaatc tgtaattgtg aagtcagggg aagaagcatc cctaagataa
     3241 accggttcat gccacagagg gacaataaat ggttttctaa cttctggtta acattagtac
     3301 cctgaggtca tcagcctgat gacaaagaga agggttagtg ttgttccttc tgttcgtttg
     3361 ttttggtctg cttggtttct tagaatagag atgtctctaa attggaagaa atgggacctg
     3421 gttctctaag cttgtacttg aatccagtat gtggccttgt aactacttag tccctgtcac
     3481 atctactatg tttgagaggc ctccgggaga ggtataagac cctgaggggt gagagtggcc
     3541 agctaacaag gtcatggaca ttctgtatgg cacttcagta acgattcgaa aatgttcctg
     3601 tgtgtgggtg ttgggaggtg gggggttaac ctaaggaact agaaggtatg tgtatttgaa
     3661 ggaaatgcaa aaagtaaata tttggcaaga tggcattatg cctggatgac ggagatcagt
     3721 agaaagactc tcttctaacc agtgccacaa tcagagcagg gcttgataaa gaggattcct
     3781 ggaaggagcc atcctgtgac cattctacag tgattaaaac cagtggagaa ctttgtgtga
     3841 gtggcaggga tctattgaaa ctacccacag aggaatatgg tgggatcgca tccccctgat
     3901 taggggcaaa gtacaaaagg gacacgtaag ggttctcttg gaaacaggaa gaatgattcc
     3961 agatttgggt tgaatgattg ccattttaag ttgatgaaag agatcagagc agtgctacct
     4021 ttgcacaggc agtctctctc cctgcagtag tttgcactga tcacctctca atgcatcttc
     4081 cccacctagc acttcatgca gtgctcttcg catccagtac ctttcccacg acttcccccc
     4141 tcgcctgcga tcacatccaa cgtggcggcc accacatctc tttgcattaa gcgaagcatg
     4201 agaacactgg cagcggaagt ttggggatgg aaagtagcgt gcctctggaa atacagctcc
     4261 ctgggaattc gtattaggtc aatcctacag ataccaaaat gtgccccaag actccttcat
     4321 tttctgatgg aagtgggagc gctccatttt ccctggcaga tttcccctga gaaatgatac
     4381 tagccctagg gtttgcccac cttgtaactc ttcatcacat cctccttttc atccctaact
     4441 cctccccctg gcttggaatt gactcctgtg cggtactttt gccaagtgac acctttacat
     4501 ttatttttca ttttgctgtg gtggtggttc tttatttacc gtttgccttt tctctcacat
     4561 atcttccctg cccctctttc cttctgagtt ttatttttct gcccagaaaa acctgacttc
     4621 gataccaaaa aaagatgaaa ctacagaaac tcaaatttaa aaaaaaaaac cttaaaaaaa
     4681 cacaaaaaaa tactcaacga ttctttcagc tttattaaca ttttccattg tttcttgcga
     4741 ctcgtgtctc gttctttgta gtattgatga tgaacatttg ataatgaatg ttcttgtata
     4801 ttcagataaa gaaaaaaaac caaaaaagcg gtctgaattt aatagtgttt ataataaaaa
     4861 ttttaaaaat gaccctcata gcacgcaaaa caggatgggg gatttcccct cttctttctg
     4921 tgacaatgca catcattcct gcattagttt ttaacaccga actacctaca ttcaccattt
     4981 cccccatttt tcttttattt tcttgcattt gtgaattagt tcaagaatgc tagaaaagtg
     5041 tcgagttgtg cacatccatt tcctgtttca caatgtttaa aagtgacagt aattcatttt
     5101 gtaaactaaa aaaaaaaaag gttggaatag tgagcataat aggtacagcc taacacgtta
     5161 ttatgtttat taacttcgag acccagaaat aaattctttt cttttctttc ttctgctct
//
LOCUS       XM_032650168            2801 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PBX homeobox 1 (PBX1), transcript variant
            X3, mRNA.
ACCESSION   XM_032650168
VERSION     XM_032650168.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2801
                     /gene="PBX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762754"
     CDS             196..1416
                     /gene="PBX1"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription factor 1
                     isoform X2"
                     /protein_id="XP_032506059.1"
                     /db_xref="GeneID:116762754"
                     /translation="MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIG
                     DILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTVLSIRGAQEEEPTD
                     PQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGAGSDNSVEHSDYRAKLSQIRQI
                     YHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLKQS
                     TCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT
                     VSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNVSAHGSQANSPSTPNSAGS
                     SSSFNMSNSGDLFMSVQSLNGDSYQGAQVGANVQSQVDTLRHVISQTGGYSDGLAASQ
                     MYSPQGISEIARTY"
     misc_feature    319..891
                     /gene="PBX1"
                     /note="PBC domain; Region: PBC; pfam03792"
                     /db_xref="CDD:461052"
     misc_feature    895..1077
                     /gene="PBX1"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(895..909,913..915,973..975,991..993,1030..1032,
                     1036..1041,1048..1053,1057..1065,1069..1074)
                     /gene="PBX1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(901..903,910..912,1039..1041,1048..1053,1060..1062)
                     /gene="PBX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
        1 cctcccacca tcctctaaag aggcaaaggg attttttttt ttttcttttt cttttggtct
       61 tctttttccc ccccttccct gtttatcctg aaaaggattt gaagacagct tgaaggataa
      121 aaagccttgg tgcttcccag gagccgagcc gaggagcaga agaggaagag ccgggggctg
      181 ccgttgcctt tggagatgga cgagcagccc aggctgatgc attcccatgc tggggtcggg
      241 atggccggac accccggcct gtcccagcac ttgcaggatg gggccggagg gaccgagggg
      301 gagggcggga ggaagcagga cattggagac attttacagc aaattatgac catcacagac
      361 cagagtttgg atgaggcgca ggccagaaaa catgctttaa actgccacag aatgaagcct
      421 gccttgttta atgtgttgtg tgaaatcaaa gaaaaaacag ttttgagtat ccggggagcg
      481 caggaagaag agccaacaga cccccagctg atgcgactgg acaacatgct gctggcggag
      541 ggggtggccg ggccagagaa gggtggcggc tcggccgcgg cggctgcggc ggcggcagct
      601 tctggaggcg ccggttccga caattcggtg gagcattctg attacagagc caaactctcg
      661 cagatcagac aaatctacca cacggagctg gagaaatacg agcaggcatg taatgagttc
      721 accacccacg tgatgaatct cctgcgagag caaagccgga ccaggcccat ctccccgaag
      781 gagatcgagc ggatggtcag tatcatccac cgcaagttca gctccatcca gatgcagctg
      841 aagcagagca cgtgtgaggc cgtcatgatc ctgcgttccc ggtttctgga tgcgcggcgg
      901 aagagacgga atttcaacaa gcaagcgacg gaaatcctga atgaatattt ctattcccat
      961 ctcagcaacc cctaccccag tgaggaagcc aaagaggagt tagccaagaa gtgtggtatc
     1021 acagtgtccc aggtatcaaa ctggtttgga aataaacgaa tccggtacaa gaagaacata
     1081 ggtaaatttc aagaggaagc caatatttat gctgccaaaa cagctgtcac tgctaccaat
     1141 gtgtcagccc atggaagcca agctaactca ccgtcaactc ccaattcagc tggttcttcc
     1201 agttctttta acatgtcaaa ctctggagat ttgttcatga gcgtgcagtc actcaatggg
     1261 gattcttacc aaggggccca ggttggagcc aacgtgcaat cacaggtgga tacccttcgc
     1321 catgttatca gccagacagg aggatacagt gacggactcg cagccagtca gatgtacagt
     1381 ccgcagggca tcagtgaaat tgcaagaacc tactaagggc tgggacgtcc tggtgctgac
     1441 agctacttct cttctcttga ctgaagaaat gtcttcctcg acctgaatag tggtctgtct
     1501 tccagaatga cacatgctga cttttgaagg agtaagagga tacctcctgg tcagtcacat
     1561 cggcccaaac aactatggtg agcagtggac tggcacatgt tgcaaccaga tgactgttgc
     1621 atcaacagaa tcccaaagca ataatcactc ttctttctct tccccactaa tccagcaatc
     1681 aaataatcac ttgtaagcat tcactatgca ccaccatata atataaaatg tggtgagtac
     1741 ctacatatat gacctctcaa ccctcaataa aattataata cattaagaaa gcaagagttg
     1801 tgcatgtgaa aatacgacta attacatagg gaagaagaca gtgaacacat ttagagcatc
     1861 tcctgtattc cattcactgt gcaaggtgct gtatacacat tattttatct aatccctacc
     1921 acatccctga gacacatttc tatccttgtt ccatggatga tgatactggg agtcagagat
     1981 gcttaataac ttgcccaaga tcacatagtg agaaaagtgt ggagcctgtt ttcaagttta
     2041 gaaggatcta actttatgga ctatgcctcg ttacccactg ccaatgagag gaatcagagc
     2101 tagacatcgt ttatgctgtt gggtcaagac aagactcttt aaaatacctc ccagtaaaat
     2161 acactgataa agttttgcca agttcattca ttggtttggg agagatttct agccagagaa
     2221 taaatgtttg gattctggag gcagggatgg tgcatttgaa atgacagccc tctggtctca
     2281 gctccgccat tatctacaag tgttcatctg agcaaattgc ttccctcttt taggcctttg
     2341 ggtcaccgtc tgtaatatag agcatttctg gtttgtctaa ggtcacttac actccgtcac
     2401 tgggcaggta tataatgtac ccgctctcat gtcaagtagc cttgagtttg aattctggct
     2461 ccatcctcaa gcagtggctg ttgggcaagt catttaacca tctgtaaagt ggagataata
     2521 atacctacct cagggtcctc gcccatattg tttgttctcc ttggaacggt cttccccagt
     2581 tatcacaaag gtcattctat tacctcctcc aggtcttcac tcagttactt ttttagtgag
     2641 acttttcttg aacatgatct ctgaattgca aaccatgtgt catttcctgt cttctttcct
     2701 cattttgtta tactccttaa cactcaacac ctaacatact atacatagca cttaattatc
     2761 ttatttattg cctgtttccc acctctagaa tgtaagctct a
//
LOCUS       XM_032650175            5092 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PBX homeobox 1 (PBX1), transcript variant
            X4, mRNA.
ACCESSION   XM_032650175
VERSION     XM_032650175.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5092
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5092
                     /gene="PBX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762754"
     CDS             196..1239
                     /gene="PBX1"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription factor 1
                     isoform X3"
                     /protein_id="XP_032506066.1"
                     /db_xref="GeneID:116762754"
                     /translation="MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIG
                     DILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTVLSIRGAQEEEPTD
                     PQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGAGSDNSVEHSDYRAKLSQIRQI
                     YHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLKQS
                     TCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT
                     VSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNVSAHGSQANSPSTPNSAGG
                     YPSPCYQPDRRIQ"
     misc_feature    319..891
                     /gene="PBX1"
                     /note="PBC domain; Region: PBC; pfam03792"
                     /db_xref="CDD:461052"
     misc_feature    895..1077
                     /gene="PBX1"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(895..909,913..915,973..975,991..993,1030..1032,
                     1036..1041,1048..1053,1057..1065,1069..1074)
                     /gene="PBX1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(901..903,910..912,1039..1041,1048..1053,1060..1062)
                     /gene="PBX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
        1 cctcccacca tcctctaaag aggcaaaggg attttttttt ttttcttttt cttttggtct
       61 tctttttccc ccccttccct gtttatcctg aaaaggattt gaagacagct tgaaggataa
      121 aaagccttgg tgcttcccag gagccgagcc gaggagcaga agaggaagag ccgggggctg
      181 ccgttgcctt tggagatgga cgagcagccc aggctgatgc attcccatgc tggggtcggg
      241 atggccggac accccggcct gtcccagcac ttgcaggatg gggccggagg gaccgagggg
      301 gagggcggga ggaagcagga cattggagac attttacagc aaattatgac catcacagac
      361 cagagtttgg atgaggcgca ggccagaaaa catgctttaa actgccacag aatgaagcct
      421 gccttgttta atgtgttgtg tgaaatcaaa gaaaaaacag ttttgagtat ccggggagcg
      481 caggaagaag agccaacaga cccccagctg atgcgactgg acaacatgct gctggcggag
      541 ggggtggccg ggccagagaa gggtggcggc tcggccgcgg cggctgcggc ggcggcagct
      601 tctggaggcg ccggttccga caattcggtg gagcattctg attacagagc caaactctcg
      661 cagatcagac aaatctacca cacggagctg gagaaatacg agcaggcatg taatgagttc
      721 accacccacg tgatgaatct cctgcgagag caaagccgga ccaggcccat ctccccgaag
      781 gagatcgagc ggatggtcag tatcatccac cgcaagttca gctccatcca gatgcagctg
      841 aagcagagca cgtgtgaggc cgtcatgatc ctgcgttccc ggtttctgga tgcgcggcgg
      901 aagagacgga atttcaacaa gcaagcgacg gaaatcctga atgaatattt ctattcccat
      961 ctcagcaacc cctaccccag tgaggaagcc aaagaggagt tagccaagaa gtgtggtatc
     1021 acagtgtccc aggtatcaaa ctggtttgga aataaacgaa tccggtacaa gaagaacata
     1081 ggtaaatttc aagaggaagc caatatttat gctgccaaaa cagctgtcac tgctaccaat
     1141 gtgtcagccc atggaagcca agctaactca ccgtcaactc ccaattcagc tggtggatac
     1201 ccttcgccat gttatcagcc agacaggagg atacagtgac ggactcgcag ccagtcagat
     1261 gtacagtccg cagggcatca gtgctaatgg aggttggcag gatgctacta ccccttcatc
     1321 agtgacctcc cctacagaag gccctggcag tgttcactct gatacctcca actgatctcc
     1381 cagcagtcgc atcccggctg accctgtgct ccagtcgggg ccgggccagg agggagggtt
     1441 tctcaacgct gaagcggtca gactggaggt cgaagcaatc agcacacaca ataagagtct
     1501 ctttctcttc tcttctttgg gatgctgttt cagccaatct ggacacttct ttatactctc
     1561 ttcccttttt ttctgggtag aagccaccct tccctgcctc cagctgtcag cctggtgtcc
     1621 atcatcttcc ctgccccttt ccctctgtcc tagactccct gggtccccgc cctctattac
     1681 atccctgaag gatattttca acaattagag gaatttaaag aggaaaaaaa aaatacaaag
     1741 aaaataataa aagtgttggt atgttttcat gctggtggtt tgaggggcca gacttacctc
     1801 cctgggatcc cttgctccct ctgttaacag gcagtccttc tctgtttctc tcgttactct
     1861 cactacctct tagcaggaat acgccacatt gccctactca ttccaggccg ccctacttcc
     1921 tcttgctcta acctccccgg gggcgattct gattagaata caattcctcc tcttccttct
     1981 cagccccagg tattctttgg gggctgcctt tgctgggctt ctagaagtgc cacagtttct
     2041 ggtttcacct ctgctagctt ggttcccagc aggaagtcag gcagcaagag aagcttcaag
     2101 gaacacgaag ggcagaattc ctagaggctt ttgcatcttc ccaataacag ctcttgcttt
     2161 cagaggaaca gtctctggag accgtgcagg aagtgatgtt cagaatctac tgcaaaacca
     2221 ggtctgagtt aggcatggtg gtgaatgcat cactaaggag tagaaggttc ttatcctgcc
     2281 accctttacc tatccccttt atctctctct ctctctctct ctctctctca cacacacaca
     2341 cacacacaca agcatacaaa tcaggcacgt gccacattca gatacctata ttagtaacca
     2401 tagcattata ccttgtgagc ccaagagagg gaattaacag ctctgagtga aggtcactga
     2461 cacagagaag cagcacgtac ctggggcctc caggccccca gcatgcacgc accagaacga
     2521 cacacacagg actcgatcac gatgaagccc aggtttccag tataaactaa tcctgttctc
     2581 accacctctg gagctctcag ggagccacac acagtactta caaagtctac gatggatttg
     2641 gttctgtttt gtttttgtgt tcacgttagg gacgttgtat taattatccg aagtgttata
     2701 tggctccaac attcttgtcc tggaggagaa agatgtataa gaacatggct tgggcaaact
     2761 ttttgcttgc ttactttgaa gacctgagag tgatggagag cagggaggtc atgctttcag
     2821 tgaaatcatc catgattttt attccctggt aatatctgag agtgaagagt aggtactaga
     2881 aagctgtcct catgtcgcct gtgctcacat tcttcatagc caactgtgcc ggcaataaac
     2941 atggcagctc tgtcacttga ctaagtggga ggtggtgcct cattttcttc atctgtaaaa
     3001 tgggggttat tacgcctggc tcaccaagag gcttgtgaga gaccgaagaa gttgatttca
     3061 ttcgtatcca atctgtaatt gtgaagtcag gggaagaagc atccctaaga taaaccggtt
     3121 catgccacag agggacaata aatggttttc taacttctgg ttaacattag taccctgagg
     3181 tcatcagcct gatgacaaag agaagggtta gtgttgttcc ttctgttcgt ttgttttggt
     3241 ctgcttggtt tcttagaata gagatgtctc taaattggaa gaaatgggac ctggttctct
     3301 aagcttgtac ttgaatccag tatgtggcct tgtaactact tagtccctgt cacatctact
     3361 atgtttgaga ggcctccggg agaggtataa gaccctgagg ggtgagagtg gccagctaac
     3421 aaggtcatgg acattctgta tggcacttca gtaacgattc gaaaatgttc ctgtgtgtgg
     3481 gtgttgggag gtggggggtt aacctaagga actagaaggt atgtgtattt gaaggaaatg
     3541 caaaaagtaa atatttggca agatggcatt atgcctggat gacggagatc agtagaaaga
     3601 ctctcttcta accagtgcca caatcagagc agggcttgat aaagaggatt cctggaagga
     3661 gccatcctgt gaccattcta cagtgattaa aaccagtgga gaactttgtg tgagtggcag
     3721 ggatctattg aaactaccca cagaggaata tggtgggatc gcatccccct gattaggggc
     3781 aaagtacaaa agggacacgt aagggttctc ttggaaacag gaagaatgat tccagatttg
     3841 ggttgaatga ttgccatttt aagttgatga aagagatcag agcagtgcta cctttgcaca
     3901 ggcagtctct ctccctgcag tagtttgcac tgatcacctc tcaatgcatc ttccccacct
     3961 agcacttcat gcagtgctct tcgcatccag tacctttccc acgacttccc ccctcgcctg
     4021 cgatcacatc caacgtggcg gccaccacat ctctttgcat taagcgaagc atgagaacac
     4081 tggcagcgga agtttgggga tggaaagtag cgtgcctctg gaaatacagc tccctgggaa
     4141 ttcgtattag gtcaatccta cagataccaa aatgtgcccc aagactcctt cattttctga
     4201 tggaagtggg agcgctccat tttccctggc agatttcccc tgagaaatga tactagccct
     4261 agggtttgcc caccttgtaa ctcttcatca catcctcctt ttcatcccta actcctcccc
     4321 ctggcttgga attgactcct gtgcggtact tttgccaagt gacaccttta catttatttt
     4381 tcattttgct gtggtggtgg ttctttattt accgtttgcc ttttctctca catatcttcc
     4441 ctgcccctct ttccttctga gttttatttt tctgcccaga aaaacctgac ttcgatacca
     4501 aaaaaagatg aaactacaga aactcaaatt taaaaaaaaa aaccttaaaa aaacacaaaa
     4561 aaatactcaa cgattctttc agctttatta acattttcca ttgtttcttg cgactcgtgt
     4621 ctcgttcttt gtagtattga tgatgaacat ttgataatga atgttcttgt atattcagat
     4681 aaagaaaaaa aaccaaaaaa gcggtctgaa tttaatagtg tttataataa aaattttaaa
     4741 aatgaccctc atagcacgca aaacaggatg ggggatttcc cctcttcttt ctgtgacaat
     4801 gcacatcatt cctgcattag tttttaacac cgaactacct acattcacca tttcccccat
     4861 ttttctttta ttttcttgca tttgtgaatt agttcaagaa tgctagaaaa gtgtcgagtt
     4921 gtgcacatcc atttcctgtt tcacaatgtt taaaagtgac agtaattcat tttgtaaact
     4981 aaaaaaaaaa aaggttggaa tagtgagcat aataggtaca gcctaacacg ttattatgtt
     5041 tattaacttc gagacccaga aataaattct tttcttttct ttcttctgct ct
//
LOCUS       XM_032650184            3057 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PBX homeobox 1 (PBX1), transcript variant
            X5, mRNA.
ACCESSION   XM_032650184
VERSION     XM_032650184.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3057
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3057
                     /gene="PBX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762754"
     CDS             475..1518
                     /gene="PBX1"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription factor 1
                     isoform X3"
                     /protein_id="XP_032506075.1"
                     /db_xref="GeneID:116762754"
                     /translation="MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIG
                     DILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTVLSIRGAQEEEPTD
                     PQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGAGSDNSVEHSDYRAKLSQIRQI
                     YHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLKQS
                     TCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT
                     VSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNVSAHGSQANSPSTPNSAGG
                     YPSPCYQPDRRIQ"
     misc_feature    598..1170
                     /gene="PBX1"
                     /note="PBC domain; Region: PBC; pfam03792"
                     /db_xref="CDD:461052"
     misc_feature    1174..1356
                     /gene="PBX1"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(1174..1188,1192..1194,1252..1254,1270..1272,
                     1309..1311,1315..1320,1327..1332,1336..1344,1348..1353)
                     /gene="PBX1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1180..1182,1189..1191,1318..1320,1327..1332,
                     1339..1341)
                     /gene="PBX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
        1 aaagtttgca ttgcaatccc cctgccttcc tctcctttct cccgatcaat gcatatttgc
       61 aaaaggatta agccacagat ataagcgccg ggagcccatt tctaccttgc aaaggatacc
      121 ggactgaaaa accaaaagcc agctctgatt tcttttcgtc aagtgggaag gtggtttatt
      181 tttcttgctt tttggagtca acacccttcc ccaccagccc ttatccccac cctcaccccg
      241 caaccccttc acgcccccct ccccctcccc actccccatc ctcccaccat cctctaaaga
      301 ggcaaaggga tttttttttt tttctttttc ttttggtctt ctttttcccc cccttccctg
      361 tttatcctga aaaggatttg aagacagctt gaaggataaa aagccttggt gcttcccagg
      421 agccgagccg aggagcagaa gaggaagagc cgggggctgc cgttgccttt ggagatggac
      481 gagcagccca ggctgatgca ttcccatgct ggggtcggga tggccggaca ccccggcctg
      541 tcccagcact tgcaggatgg ggccggaggg accgaggggg agggcgggag gaagcaggac
      601 attggagaca ttttacagca aattatgacc atcacagacc agagtttgga tgaggcgcag
      661 gccagaaaac atgctttaaa ctgccacaga atgaagcctg ccttgtttaa tgtgttgtgt
      721 gaaatcaaag aaaaaacagt tttgagtatc cggggagcgc aggaagaaga gccaacagac
      781 ccccagctga tgcgactgga caacatgctg ctggcggagg gggtggccgg gccagagaag
      841 ggtggcggct cggccgcggc ggctgcggcg gcggcagctt ctggaggcgc cggttccgac
      901 aattcggtgg agcattctga ttacagagcc aaactctcgc agatcagaca aatctaccac
      961 acggagctgg agaaatacga gcaggcatgt aatgagttca ccacccacgt gatgaatctc
     1021 ctgcgagagc aaagccggac caggcccatc tccccgaagg agatcgagcg gatggtcagt
     1081 atcatccacc gcaagttcag ctccatccag atgcagctga agcagagcac gtgtgaggcc
     1141 gtcatgatcc tgcgttcccg gtttctggat gcgcggcgga agagacggaa tttcaacaag
     1201 caagcgacgg aaatcctgaa tgaatatttc tattcccatc tcagcaaccc ctaccccagt
     1261 gaggaagcca aagaggagtt agccaagaag tgtggtatca cagtgtccca ggtatcaaac
     1321 tggtttggaa ataaacgaat ccggtacaag aagaacatag gtaaatttca agaggaagcc
     1381 aatatttatg ctgccaaaac agctgtcact gctaccaatg tgtcagccca tggaagccaa
     1441 gctaactcac cgtcaactcc caattcagct ggtggatacc cttcgccatg ttatcagcca
     1501 gacaggagga tacagtgacg gactcgcagc cagtcagatg tacagtccgc agggcatcag
     1561 tgaaattgca agaacctact aagggctggg acgtcctggt gctgacagct acttctcttc
     1621 tcttgactga agaaatgtct tcctcgacct gaatagtggt ctgtcttcca gaatgacaca
     1681 tgctgacttt tgaaggagta agaggatacc tcctggtcag tcacatcggc ccaaacaact
     1741 atggtgagca gtggactggc acatgttgca accagatgac tgttgcatca acagaatccc
     1801 aaagcaataa tcactcttct ttctcttccc cactaatcca gcaatcaaat aatcacttgt
     1861 aagcattcac tatgcaccac catataatat aaaatgtggt gagtacctac atatatgacc
     1921 tctcaaccct caataaaatt ataatacatt aagaaagcaa gagttgtgca tgtgaaaata
     1981 cgactaatta catagggaag aagacagtga acacatttag agcatctcct gtattccatt
     2041 cactgtgcaa ggtgctgtat acacattatt ttatctaatc cctaccacat ccctgagaca
     2101 catttctatc cttgttccat ggatgatgat actgggagtc agagatgctt aataacttgc
     2161 ccaagatcac atagtgagaa aagtgtggag cctgttttca agtttagaag gatctaactt
     2221 tatggactat gcctcgttac ccactgccaa tgagaggaat cagagctaga catcgtttat
     2281 gctgttgggt caagacaaga ctctttaaaa tacctcccag taaaatacac tgataaagtt
     2341 ttgccaagtt cattcattgg tttgggagag atttctagcc agagaataaa tgtttggatt
     2401 ctggaggcag ggatggtgca tttgaaatga cagccctctg gtctcagctc cgccattatc
     2461 tacaagtgtt catctgagca aattgcttcc ctcttttagg cctttgggtc accgtctgta
     2521 atatagagca tttctggttt gtctaaggtc acttacactc cgtcactggg caggtatata
     2581 atgtacccgc tctcatgtca agtagccttg agtttgaatt ctggctccat cctcaagcag
     2641 tggctgttgg gcaagtcatt taaccatctg taaagtggag ataataatac ctacctcagg
     2701 gtcctcgccc atattgtttg ttctccttgg aacggtcttc cccagttatc acaaaggtca
     2761 ttctattacc tcctccaggt cttcactcag ttactttttt agtgagactt ttcttgaaca
     2821 tgatctctga attgcaaacc atgtgtcatt tcctgtcttc tttcctcatt ttgttatact
     2881 ccttaacact caacacctaa catactatac atagcactta attatcttat ttattgcctg
     2941 tttcccacct ctagaatgta agctctataa gggcagggtt tttttgtatt ctctactgct
     3001 gtatctccag tttctagaat gatttaggtg cttaataaat atttgttgca tagatga
//
LOCUS       XM_032650194             405 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 60S ribosomal protein L36-like
            (LOC116762783), mRNA.
ACCESSION   XM_032650194
VERSION     XM_032650194.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..405
                     /gene="LOC116762783"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 16 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762783"
     CDS             34..351
                     /gene="LOC116762783"
                     /codon_start=1
                     /product="60S ribosomal protein L36-like"
                     /protein_id="XP_032506085.1"
                     /db_xref="GeneID:116762783"
                     /translation="MPLRYPMAVGLSKGHKVTKSVSKPRHSRRRGRLTKHTKFVRDVI
                     REVCSFALYERQAMELLKVSKDKRALKFINKRVGTHIRAKRKREELSNVLAAMRKTAA
                     KKD"
     misc_feature    43..330
                     /gene="LOC116762783"
                     /note="Ribosomal protein L36e; Region: Ribosomal_L36e;
                     pfam01158"
                     /db_xref="CDD:460088"
ORIGIN      
        1 ttccgccgcg gcagccattg aggagcggca gccatgcctc tgcgataccc catggccgtg
       61 ggcctcagca agggccacaa ggtgaccaag agcgtgagca agccgaggca cagccgccgc
      121 cgcgggcgcc tcaccaagca caccaagttc gtgcgggacg tgatccggga ggtgtgcagc
      181 tttgcccttt atgagcggca ggccatggag ctgctcaagg tttccaagga caagcgggcc
      241 ctcaagttca tcaataaaag ggtggggaca cacatccgtg ccaagaggaa gagagaggag
      301 ctgagcaatg tcctggccgc catgaggaag acggcagcca agaaggactg agcccttccc
      361 ctctgtgcac aataaaactt ttccagaaaa aaaaaaaaaa aaaaa
//
LOCUS       XM_032650207            3449 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 47
            (LRRC47), mRNA.
ACCESSION   XM_032650207
VERSION     XM_032650207.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 4 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-449               VOSU01000011.1     2315536-2315984     c
            450-647             VOSU01000011.1     2315336-2315533     c
            648-1106            VOSU01000011.1     2307062-2307520     c
            1107-1223           VOSU01000011.1     2306235-2306351     c
            1224-1339           VOSU01000011.1     2305491-2305606     c
            1340-1358           VOSU01000011.1     2305009-2305027     c
            1359-1418           VOSU01000011.1     2304948-2305007     c
            1419-1419           "N"                1-1
            1420-1442           VOSU01000011.1     2304925-2304947     c
            1443-1532           VOSU01000011.1     2304580-2304669     c
            1533-1685           VOSU01000011.1     2304274-2304426     c
            1686-1686           "N"                1-1
            1687-3449           VOSU01000011.1     2302511-2304273     c
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3449
                     /gene="LRRC47"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 3 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2 long
                     SRA reads, 3 Proteins, and 96% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116762790"
     CDS             33..1781
                     /gene="LRRC47"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 3 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: leucine-rich
                     repeat-containing protein 47"
                     /protein_id="XP_032506098.1"
                     /db_xref="GeneID:116762790"
                     /translation="MAAAAVSEAWPELELAERERRRELLLTGPGLEQRVRAAGGRLPP
                     RLFTLPLLHYLEVSGCGSLREPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALR
                     VLDLSGNALEALPPGQGLGPRRAAGFPQLQSLNLSGNRLRELPADLARCAPRLQTLNL
                     TGNRLDAFPAALFRPGALPLLSELAAADNCLRELSPEIAHLASLKTLDLSNNQLSEIP
                     AELADCPRLKDINFRGNRLRDKRLEKMVSGCQTRSILEYLRAGGRGGCRSRGKTEGPD
                     REEARRKRRERRKRECGEGEEAWVDEASRLLLRVLHVAENPAPLTVRVSPGVGDVRPF
                     IVGAVVRGMDLQPGNALKRFLSSQTKLHEDLCEKRTVATIATHDLRAIRGPLLYATRP
                     PEDLRIVPLGRREVKAKDLVRQLQLEAEEHRKQKKRQNVSGLHRYLHLLDGREHYPCL
                     VDANGDVISFPPXTNSEKTKIKKTTCDLFLEVTSATSLQICKDIMDALILKMAEINKY
                     TLENKDEGSLSDHEVDAIPGQVPGPRATPGAEQAGSTPLVVEQXRVVDEEGHLKVVYP
                     SKTDLDLAAAHVTVLR"
     misc_feature    <168..>749
                     /gene="LRRC47"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    186..260
                     /gene="LRRC47"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    261..332
                     /gene="LRRC47"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    333..422
                     /gene="LRRC47"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    423..494
                     /gene="LRRC47"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    495..572
                     /gene="LRRC47"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    573..641
                     /gene="LRRC47"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    642..710
                     /gene="LRRC47"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1002..>1481
                     /gene="LRRC47"
                     /note="phenylalanyl-tRNA synthetase, beta subunit; Region:
                     pheT_arch; TIGR00471"
                     /db_xref="CDD:273096"
ORIGIN      
        1 gccccggcag gggctgcggg agcggcggcg cgatggcggc tgcggcggtg tcggaggcct
       61 ggccggagct ggagctggcg gagcgggagc ggcggcggga gctgctgctg accgggcccg
      121 ggctggaaca gcgggtgcgc gcggcgggcg ggcggctgcc gccgcggctc ttcacgctgc
      181 cgctgctgca ctacctggag gtgagcggct gcggcagcct gcgcgagccg ggcccgggcc
      241 tggctcaggg cctcccgcag ctgcacagcc tcgtgctgcg gcgcaacgcg ctggggcccg
      301 gcctgagccc tgagctcggc ccgctgcccg cgctgcgcgt gctcgacctg tcaggcaacg
      361 cgctggaggc gctgccgccg ggccagggcc tcggcccccg ccgagccgcc ggcttcccgc
      421 agctgcagag cctcaacctc agtggcaacc ggctgcgcga gctgcccgcc gacctggcgc
      481 gctgcgcgcc gcgcctgcag accctcaacc tcaccggcaa ccgcctggac gccttccccg
      541 ccgcgctctt ccgccccggc gcgctgccgc tgctcagcga actggcggcc gccgacaact
      601 gcctccggga gctcagcccg gaaatcgccc acctggcctc gctcaagacg ctggacctgt
      661 ccaacaacca gctgagtgag atcccagcag agctggccga ctgccccagg ctcaaggaca
      721 tcaacttccg ggggaacagg ctgcgggaca agcgcctgga gaagatggtc agcggctgcc
      781 agaccaggtc catcttggag tacctgcgtg ctgggggccg cgggggctgc cggagccggg
      841 gcaagaccga gggccccgac agggaggagg cgcggaggaa gcggcgggag cggaggaaga
      901 gggagtgcgg cgagggcgag gaggcgtggg tggacgaggc cagccggctg ctgctgcggg
      961 tcctgcacgt ggccgagaac ccggccccgc tgacggtcag ggtgagcccc ggggtcgggg
     1021 acgtgcggcc cttcatcgtg ggcgccgtgg tgcggggcat ggacctgcag cccgggaatg
     1081 cgctcaagcg cttcctctcc tcccagacaa agctgcacga ggacctttgt gagaagagga
     1141 cggtggccac catcgcaacc cacgacctca gagccatccg ggggcccctg ctgtatgcca
     1201 cccgcccccc agaagacctc aggatcgtcc ccttggggcg ccgggaagtc aaggccaagg
     1261 acctggtgcg gcagctgcag ctggaggcgg aggagcacag gaagcagaag aagaggcaga
     1321 acgtgtcggg cctgcacagg taccttcacc tgctggacgg aagggagcat tacccgtgcc
     1381 tcgtggatgc aaacggcgac gtgatttctt tcccgccant aacaaacagc gagaagacga
     1441 agattaagaa aaccacttgt gacctgtttc tggaagtgac gagcgccacc agcctgcaga
     1501 tttgcaagga catcatggat gccctcatcc tgaaaatggc agaaatcaac aagtacactt
     1561 tggaaaacaa agacgaaggt tccctctccg accacgaagt cgatgccatt cctggacaag
     1621 tcccgggccc cagggcgact cccggtgctg agcaggccgg gagcaccccg ctggtggtgg
     1681 agcagngtcg ggtggtggat gaggagggcc acctgaaggt ggtgtatccg tccaagacgg
     1741 acctggacct cgccgccgcc catgtgactg tgctccgctg acagccgggc cactgcctca
     1801 ggctgccagg gaggcactgt caggcgcact ggctctgcag ggcttccgtg tggtcatatt
     1861 gaattattcc ttcaccatcg gtagtttgta agatatatgc attctctgtt cagttttcca
     1921 gtcgattctg tcgtaggggg tgccacgctg acatgcgctc aagtcatttc accttcacag
     1981 caccgaattg agtctgccag tgcttttcat gaaatcactt gaatattgga actaactgct
     2041 cacagggttc tgaaatcatg tagccacaca gcaaatcact gtattcacag ggggaaagga
     2101 cactgtaatt gggtgtgaat atttagttct aagttgagag gctgaacgac gtgcattttg
     2161 ccgagctgca cggttatttt tctacgacac gatgtcttct gaaatcctac agttccagca
     2221 ctgcagctta gaaatgtggg gtgtccatgg tttccagttg ttataaaccg taatcttttt
     2281 ataaaacatt ttttaaacgt gaccttagaa ttggcaaaaa tcatttttct tactgctgct
     2341 gtagatgctt tggggtggga ggcagggcat ccgggagcga tggcccaact cgcctgctgc
     2401 actggccgga cttcgggagg gcagggtgtc agtcgactaa accagcacca gggccgtgag
     2461 gtgtcacacc tgcgtctgga ggtcagtgtg cagctttccc actgcaaaac agcttccatg
     2521 ctcagacagg gcggtcaacc gtcgtcagct tgctccagga cctgggtggc ggtgactgga
     2581 ggaggcatgg ggagtttgat gccaggaatc atggagcgtg tgccggacaa gggggtctca
     2641 gcatctggca ttctaggtat ttccagctct gagtcggcag ttcactgacc tcactgctcc
     2701 aggagcagcc ggcacaggaa aaaccgaccc gccagctttt tcttgttgag tgaacgcgtg
     2761 ttccatggtc tttgacctgc aaaggacagt ttatgtgttt tgtcaaaatg acaggcggct
     2821 ggcaggcatg tgcgagagcc ccccccccgg acccaggcat gtagcggtca gagccagacc
     2881 cacgtgaggc ccacacccca cacgccgggc ctgctgtaca accacgtggg ttccccaggg
     2941 cccggccagc cctcctcgaa ggacatggcg gggctgcctt gacacctacc tgacccagct
     3001 ctccggtcac tgccagggct gccctttgtc ggccctgggg cagccgtgcc taactgggct
     3061 gagtggacac caggtgacgg tgttccccaa acctacctga catctgggtg cattggtggc
     3121 tcagggttgt cacttcatga ccctcgggcc atcaaggcca cagatgctgc ggctgacgtg
     3181 ggcgtgggcg tcacggcgaa gccctgctgg gagctccggg ttggggccgc agctgagctg
     3241 ccctcttggc accaggctgt ggcttcggcg gccgcgtggc accaggtctg gggcgccttg
     3301 atgttgggga gcagccggcc ctgctgctct tctctggtgc agtttgattc cgtgtgaggt
     3361 ttggaaacgt attcaactta gagcagaaaa ccgctttgac gtttcttttc tttgtcaacc
     3421 gaccctctaa taaaaacatt tagaaggaa
//
LOCUS       XM_032650220            1531 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrilin 1 (MATN1), mRNA.
ACCESSION   XM_032650220
VERSION     XM_032650220.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1531
                     /gene="MATN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 21 Proteins, and 8%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762797"
     CDS             44..1531
                     /gene="MATN1"
                     /codon_start=1
                     /product="cartilage matrix protein"
                     /protein_id="XP_032506111.1"
                     /db_xref="GeneID:116762797"
                     /translation="MRVLCGPCLVLCGLLLLQVPRVPGLALLSRGHLCRTRPIDLVFV
                     IDSSRSVRPVEFEKVKVFLSQVIESLDVGPNATRVGVVNYASSVKQEFPLRAHGSKAM
                     LLQAVRRIQPLSTGTMTGLAIQFAITKALSDAEGGRPSSPDISKVVIVVTDGRPQDSV
                     RDVSARARASGIELFAIGVGRVDKATLQQIASEPQDEHVDYVESYSVIEKLSKKFQEA
                     FCLVSDLCATGDHDCEQVCLSSPGSYTCACREGFTLNSDGKTCNGCSGGGGSSATDLV
                     FLIDGSKSVRPENFELVKKFINQIVDTLDVSDKLAQVGLVQYSSSVRQEFPLGRFHTK
                     KDIKAAVRNMSYMEKGTMTGAALKYLIDNSFSVSSGARPGAQKVGIVFTDGRSQDYIN
                     DAAKKAKDLGFKMFAVGVGNAVEDELREIASEPVAEHYFYTADFKTINQIGKKLQKKI
                     CVEEDLCACESIVKFRTKVEGLLQALTRKLEAVSKRLAILENRIV"
     misc_feature    152..823
                     /gene="MATN1"
                     /note="VWA_Matrilin: In cartilaginous plate, extracellular
                     matrix molecules mediate cell-matrix and matrix-matrix
                     interactions thereby providing tissue integrity. Some
                     members of the matrilin family are expressed specifically
                     in developing cartilage rudiments; Region: vWA_Matrilin;
                     cd01475"
                     /db_xref="CDD:238752"
     misc_feature    order(179..181,185..187,191..193,392..394,500..502)
                     /gene="MATN1"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238752"
     misc_feature    857..1528
                     /gene="MATN1"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
     misc_feature    order(881..883,1094..1096,1193..1195)
                     /gene="MATN1"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238119"
ORIGIN      
        1 tggtccccac cactgtgccg atactgcctg cactgccaga accatgaggg tactctgtgg
       61 cccctgtctc gtactctgcg gcctgctgct gctgcaggtc ccacgcgtac ctggccttgc
      121 gctcctgtcc agagggcacc tctgccggac ccggcccata gacctggtgt tcgtcatcga
      181 cagctcacgc agcgtgcggc cagtggagtt tgagaaggtg aaggtgttcc tgtcccaggt
      241 catcgagtca ctggacgtgg ggcccaatgc cacccgcgtg ggcgtggtca actacgccag
      301 ctccgtgaag caggagttcc cgctgcgggc ccacggttcc aaggccatgc tgcttcaggc
      361 cgtgcgccgc atccagccgc tgtccacagg caccatgaca ggcctggcca tccagttcgc
      421 catcaccaag gccttaagcg atgctgaggg cggtcgcccc agctcaccgg acatcagcaa
      481 ggtggtcatc gtggtgacgg acgggaggcc ccaggacagc gtgcgggacg tgtctgcgcg
      541 ggcccgggcc agtggcatcg agctgttcgc catcggcgta ggccgtgtgg acaaggccac
      601 gctgcagcag atcgccagcg agcctcagga cgagcacgtg gactacgtgg agagctacag
      661 cgtcatcgag aagctgtcca agaagttcca ggaggccttc tgcttggtgt cagacctgtg
      721 cgccacaggc gaccatgact gcgagcaggt gtgcctcagc tccccgggct cctacacctg
      781 cgcctgccgc gagggcttca ccctgaacag tgatggcaag acctgcaatg gctgcagcgg
      841 tggaggtggc agttcagcta ctgacctggt tttcctaatt gatggatcca agagtgtgcg
      901 gccagagaac tttgagctgg tgaagaagtt catcaaccag attgtggaca cgctggatgt
      961 gtcggacaag ctggcccaag tggggctggt acagtactca agctctgtgc gccaggagtt
     1021 ccctctgggc cgcttccaca ccaagaagga catcaaggca gctgtgcgga acatgtccta
     1081 catggagaag ggcaccatga ccggggctgc cctcaagtac ctcatcgaca attccttcag
     1141 tgtgtccagc ggggccaggc ctggtgccca gaaggtgggc attgtcttca ctgacggtcg
     1201 gagccaggac tacattaatg atgctgccaa gaaagccaag gaccttggct ttaagatgtt
     1261 tgctgtgggt gtgggcaacg ctgtggagga tgagctgagg gaaattgcct cggagcctgt
     1321 ggcagagcac tatttctaca cggctgactt caagaccatc aaccagattg gcaagaagtt
     1381 gcagaagaag atctgcgtgg aggaagacct gtgtgcctgc gagtccatcg tgaaattccg
     1441 gaccaaagta gaggggctgc tgcaggccct gaccaggaag ctggaagctg tgagtaagcg
     1501 gctggccatc ctggagaaca gaatcgtcta a
//
LOCUS       XM_032650235            1007 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor superfamily member 18
            (TNFRSF18), mRNA.
ACCESSION   XM_032650235
VERSION     XM_032650235.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1007
                     /gene="TNFRSF18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116762803"
     CDS             4..717
                     /gene="TNFRSF18"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 18"
                     /protein_id="XP_032506126.1"
                     /db_xref="GeneID:116762803"
                     /translation="MGAAGAMGVRVARVALCGVALLCALGLAQHPPGGLSCGPGRHLH
                     GTGTSARCCRSCIPAEGVCPELDCQCIQPEFHCGDPQCKSCKYYSCPPGQGAWPVGKF
                     NFGFECFDCAAGTFSGGREGRCKPWADCSKLGFPTVFPGNKTHDAVCSPGPLPTEPRG
                     LLTAVLGLAACILALTVAQLSLHVWQLRRQRARPPETQLLLEAPPPPPEDARSCQLPE
                     EEWGAPLSESKGRLEHLCV"
     misc_feature    154..528
                     /gene="TNFRSF18"
                     /note="Tumor necrosis factor receptor superfamily member
                     18 (TNFRSF18), also known as glucocorticoid-induced tumor
                     necrosis factor receptor family-related protein (GITR);
                     Region: TNFRSF18; cd13417"
                     /db_xref="CDD:276922"
     misc_feature    157..249
                     /gene="TNFRSF18"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276922"
     misc_feature    256..393
                     /gene="TNFRSF18"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276922"
ORIGIN      
        1 gccatgggtg ccgcgggtgc catgggggtg agggtcgcgc gcgtggccct gtgcggcgtc
       61 gcgctgctct gcgcgctggg cctggcccag cacccccccg ggggtctgag ctgcggcccc
      121 ggccgccatc tgcatgggac ggggaccagc gcgcgctgct gccgctcgtg catcccagct
      181 gagggggtct gtcctgagct ggactgccag tgtatccagc ctgagttcca ctgtggagac
      241 ccccagtgta agagctgcaa gtactactcc tgtccgcctg gccagggggc gtggcctgta
      301 gggaagttca acttcggctt cgagtgcttt gactgtgccg cggggacctt ctctgggggc
      361 cgtgagggcc gctgcaaacc ttgggcagac tgctccaagc ttgggtttcc cactgtgttc
      421 cccgggaaca agacgcatga tgccgtgtgc agcccagggc cgctgcccac ggagccgcgt
      481 ggcctgctga ccgccgtcct cggcctggcc gcctgcatcc tggccctgac cgtggcccag
      541 ctcagcctgc acgtctggca gctgaggagg cagagagcgc gacccccaga gacgcagctg
      601 ctcctagagg ccccgccccc cccgcccgag gacgcccgca gctgccagct ccccgaggag
      661 gagtggggcg cgccgctgtc ggagagcaag ggccgcctgg agcacctgtg tgtttgaggc
      721 cccccccccc cggagctggc gcaggctggc cctgggcccg gccctgctcc cctcaatggc
      781 ggaaacaggt gggggatggt gacagtgacc agtgccccgg atcacgcagg acaggaggca
      841 gctgtggctg aaccccaggg ggacagagga gcaccgtgcc tgcctgcctc tcttgctggc
      901 cccgctgggg tggggcccgt ggctccttgg ttcccaggac aggaggccgt gggaacacag
      961 gacctggctg caggtggcac tcaataaacg cttgtccggt ggcctga
//
LOCUS       XM_032650246            3076 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coagulation factor III, tissue factor
            (F3), mRNA.
ACCESSION   XM_032650246
VERSION     XM_032650246.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3076
                     /gene="F3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 22 long SRA reads, 9
                     Proteins, and 75% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762808"
     CDS             1615..2493
                     /gene="F3"
                     /codon_start=1
                     /product="tissue factor"
                     /protein_id="XP_032506137.1"
                     /db_xref="GeneID:116762808"
                     /translation="MATPTGPRVPCYEAAVARALLFGWVLVRVAGATGTTDVVVAYNL
                     TWKSTNFKTILEWEPKPINHVYTVQISSRLGNWKNKCFYTTDTECDVTDEIVKNVEET
                     YLARVFSYPLDAIGSTGEPPFTNSLEFTPYLETNLGQPTIRSFEQVGTALNVTVQDAR
                     TLVRVGGTFLSLRDVFGKDLNYILYYWRASSTGKKKATTNTNEFLIDVDEGENYCFNV
                     QAVIPSRRANQKSPESLIECTSREKVLSTEMPFIVVAVMLVVIIFIIVLSVSLYKCRK
                     ARAGRSGKESLPLNVA"
     misc_feature    1666..1947
                     /gene="F3"
                     /note="Tissue factor; Region: Tissue_fac; pfam01108"
                     /db_xref="CDD:460067"
     misc_feature    2017..2334
                     /gene="F3"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; Region: Interfer-bind; pfam09294"
                     /db_xref="CDD:462746"
ORIGIN      
        1 gacagtcagt ggctccaaat acaatcagtt actctgcgga cagagcaaca cacctcctcg
       61 ggtcttgtaa ggcacttgat tgaagtgtaa cattttcccc cagctacctt caactccaga
      121 gcacaaagaa tcacaaccca tgtggggcta aagatctgtt aggaaaaatg actcaggcca
      181 gagactgcaa aaaggaggat tgcatggctt agttttgcaa atataaattt tgttttagag
      241 ttggaggaga actcaaagag gaaaccagca agcgcagctt tcagcctcca ggaaggaagg
      301 actacaagag ctaaacctgg atgtgctatt tcagttcaag gaaaggggga aagtttaatt
      361 ttgcaaagtt tcatttcttt taaaataagt gtaatgctat ggctcagcag gctatatgga
      421 aatgtgtata gagtgtgcac taaaatgcaa ggctaatttc cctagaaaaa aactgggaga
      481 gaaagagaga gaaaacagac tccactctcc taaaaactct ccagtctgtc gaggaggcaa
      541 ctacagagta cagtaaaaaa tgacggcaat actttgacaa gaacgcctac agagccgctc
      601 agtagaataa gagttaacat tctcctgcct gacaacctta cagcaaagcc cagaagagga
      661 agccagaaaa ttcagaaaaa ccaaagctta agtctggact atatttttaa atttcatttt
      721 ttggtttctt tatacttgag cagaactcag tcccgcaaac gtcttcttca acggcggcag
      781 atgtcacctt ggaattctcc cagaggcaaa gtgctagatt tggggcagtt cttcctcggt
      841 cactaacccg aggtgggctg ggttgtgcct gagctgactg aacttcggac ccgtagaaac
      901 acctgcattg gcaccatctc ataggatgct ccccgggcga gccaggtatc attgccttcg
      961 gggcgaaagc cgaaatcaca gctaggagag gactctgctc ctcatcacgc tgttacttgg
     1021 ccgcagattc caaggctcag cctgacgcgc gcaaagcgcc cgggaaatgc cctgggggcc
     1081 ggagaggagc ccggagccag tactttctat taaactcgac ctgccgccca ttcaggcggg
     1141 acatctgggt cggtggcctg agggccagag ctgggagtca gggggtctgg gcggctggga
     1201 ccctggttcc cctcagcacc tggagccgcc agtggccgaa ggacactcgc gcttgacggc
     1261 cgattgaatc acgggtgaat cagcccctgc agggtttcgg agtttcctac tgggaggagg
     1321 cggggccggg gtgtggattc gccgggagca gcccagggag gctgatggag cctggctggg
     1381 ggcggggagt cgggaggaga ggcggggtcg gtcgtagggc ctgctgaggc gtgggcgtgc
     1441 gaggggctct ttaaagcgcg ccgggcacgg gctcccacac actcgggctt cctcgcgccc
     1501 ctcctgctcc atcccgcagc cccaggcgcc tccagtccaa cctccgcagc ctccccgcct
     1561 ccccagcctc cggggcgcaa ggaatcctcc cgacctcgcc gtcagctcgt gaacatggcg
     1621 acccccaccg ggccccgggt accctgctac gaggccgccg ttgctcgggc gctcctattc
     1681 ggctgggtcc tggtccgggt ggccggagcc acaggcacta cagatgtagt agtagcatat
     1741 aatttaactt ggaagtcaac taatttcaag accattttgg agtgggaacc caaacccatt
     1801 aatcatgtct acactgttca gataagctct agattaggaa attggaaaaa caaatgcttc
     1861 tacacaacag acacagagtg tgacgtcacc gacgagatcg tgaaaaacgt ggaagagaca
     1921 tacttggccc gggtcttttc ctacccattg gatgccatcg gttctactgg ggagcctccg
     1981 tttaccaact ccctggagtt cacaccttac ctagagacaa accttggaca gccaacaatt
     2041 cggagttttg aacaagttgg gacagcactg aatgtgactg tacaagatgc acgtacctta
     2101 gtcagagtgg gcggcacatt cctaagcctc cgcgatgttt ttggcaagga cttgaattat
     2161 atactttatt attggagagc ttcaagtaca ggaaagaaaa aggccacgac gaacactaat
     2221 gagtttctga ttgatgtgga tgaaggagaa aactactgtt tcaatgttca agcagtgatt
     2281 ccatcacgaa gagccaacca gaagagtcca gaaagtctca tcgagtgtac tagccgagag
     2341 aaagttctgt ccacggaaat gcccttcatc gttgtagcag tgatgcttgt tgttatcatc
     2401 ttcatcatcg tcctgtctgt gtctctgtat aagtgcagga aggcgagagc agggcgaagc
     2461 gggaaggaga gcttgcccct caatgttgca tgaaagatcc tgctcttgga tctgccaact
     2521 ctgcagaact cgtgttgcac tgtgaccaag aacatttaag gcagtagaat acatggaaac
     2581 acaaatgagt gtgtgtttgg agcttagaga cccttgggct caaagaaagc tcttatctga
     2641 cctattctca cgattagcat tctggtttca acatcagcat tagacacctt gggacgtaat
     2701 gagcggtaca accaattcca agttttttca atttctgttt attttaatgc tacagcacct
     2761 tttgcacgta tcatgctcta gactgtatat tttctacact caagttgaag ccagatcatc
     2821 taaggaaaaa caaatgaaca aatgccctaa aaaatcctgg gtggattttt ggagaacttt
     2881 tgagaggctg acttcaaacc atgtgggaga gtaaaatgga aactgggtgg actttctaac
     2941 gtatgtctgt ccttttgtaa tacggtgttt agggtttttt tttttttttt ttttgagtac
     3001 ttttggaggt tcgaaacaat tagcaaacat ttatatgaat gtgttaaaag cagaagactt
     3061 gtatttgggg cacatt
//
LOCUS       XM_032650258            1733 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell division cycle 20 (CDC20),
            transcript variant X1, mRNA.
ACCESSION   XM_032650258
VERSION     XM_032650258.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1733
                     /gene="CDC20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 6 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762814"
     CDS             151..1650
                     /gene="CDC20"
                     /codon_start=1
                     /product="cell division cycle protein 20 homolog"
                     /protein_id="XP_032506149.1"
                     /db_xref="GeneID:116762814"
                     /translation="MAQFVFESDLHSLLQLDTPIPNAPPARWQRKAKEAAGPAPSPMR
                     AANRSHSAGRTPGRTPGKSSSKNQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPE
                     DSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPSS
                     SRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQ
                     LLQLEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCW
                     NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN
                     VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQPNVLATGGGTSDRHIRIWNVCSGAC
                     LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLT
                     MSPDGATVASAAADETLRLWRCFELDAARRREREKASAAKSSLIHQGIR"
     misc_feature    <718..1563
                     /gene="CDC20"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    835..948
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    964..1071
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1084..1206
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1225..1341
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1354..1470
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ccgtagaggc caatgggcaa gggcgacagt tgcgacggtt gggttttgaa ggagccaatg
       61 agtgctcgga gcggagagtt taagaagtgt aaatccgcac tgctaaggcc agtctggaat
      121 cggagtctgc tttgagctga cgacactccc atggcccagt tcgtgttcga gagtgacctg
      181 cactcgctgc tgcagctgga tacacccatc cccaatgcac cccctgcgcg ctggcagcgc
      241 aaggcgaagg aagccgcggg gccggccccc tcgcctatgc gggcagccaa ccgatcccac
      301 agtgccggca ggaccccggg ccgaactccc ggcaaatcca gctccaagaa tcagaccact
      361 cccagcaaac ctggcggtga ccgctatatc ccccatcgca gtgcttccca gatggaggtc
      421 gctagcttcc tgctgagcaa ggagaaccag cccgaagaca gtcagacgcc caccaagaag
      481 gaacatcaga aagcatgggc tttgaacctg aacggttttg atgtggagga agccaagatc
      541 cttcggctca gtggaaaacc acaaaatgcc ccagagggtt accagaacag actgaaagtg
      601 ctctatagcc agaaggccac gcccagctcc agcaggaaga cctgccgtta cattccttcc
      661 ctgccagacc gcatcctgga cgcccctgaa atccggaatg actactacct gaaccttgtg
      721 gattggagct ctgggaatgt actggctgtg gctttggaca acagtgtgta cttgtggagt
      781 gctagctctg gtgacatcct gcagctgctg caattggagc agcctgggga ctatgtatct
      841 tctgtggcct ggatcaaaga gggcaactac ctggctgtgg gcaccagcag tgctgaggtg
      901 cagctatggg atgtgcaaca gcagaaacgg cttcgaaaca tgaccagtca ttctgcccga
      961 gtgggctccc tctgttggaa tagctatatc ctgtccagtg gctcacgctc tggccacatc
     1021 caccaccatg atgttagggt agcagaacac catgtggcca cattgagtgg ccacagccag
     1081 gaagtgtgtg ggctgcgctg ggccccagat ggacgacatt tagccagtgg cggcaacgat
     1141 aacttggtca acgtgtggcc tagtgctcct ggagaaggtg gctgggttcc tctgcagaca
     1201 ttcacccagc atcaaggggc tgtcaaggct gtagcttggt gtccctggca gcccaatgtc
     1261 ctggcaactg gaggaggcac aagtgatcga cacattcgta tctggaatgt ctgctctggg
     1321 gcctgtctga gtgctgtgga tgcccattcc caggtgtgct ccatcctctg gtctccccac
     1381 tacaaggagc tcatctcagg ccatggcttt gcccagaacc agctggttat ttggaagtac
     1441 ccaaccatgg ccaaggtggc tgagctgaaa ggtcacacag cccgggtcct tagtctgacc
     1501 atgagcccag atggggctac agtggcatca gcagcagcag atgagaccct gcgtctgtgg
     1561 cgctgctttg agttggacgc tgcccggcgg cgcgagcggg agaaggccag tgcagccaaa
     1621 agcagcctta tccaccaagg catccgttaa gaccaactca gctcagtttt ttgtgttttt
     1681 tttgtttttt tttttttttt tttacttttc taataaagtc acatctccct ctt
//
LOCUS       XM_032650267            1695 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell division cycle 20 (CDC20),
            transcript variant X2, mRNA.
ACCESSION   XM_032650267
VERSION     XM_032650267.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1695
                     /gene="CDC20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 6 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762814"
     CDS             113..1612
                     /gene="CDC20"
                     /codon_start=1
                     /product="cell division cycle protein 20 homolog"
                     /protein_id="XP_032506158.1"
                     /db_xref="GeneID:116762814"
                     /translation="MAQFVFESDLHSLLQLDTPIPNAPPARWQRKAKEAAGPAPSPMR
                     AANRSHSAGRTPGRTPGKSSSKNQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPE
                     DSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPSS
                     SRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQ
                     LLQLEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCW
                     NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN
                     VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQPNVLATGGGTSDRHIRIWNVCSGAC
                     LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLT
                     MSPDGATVASAAADETLRLWRCFELDAARRREREKASAAKSSLIHQGIR"
     misc_feature    <680..1525
                     /gene="CDC20"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    797..910
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    926..1033
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1046..1168
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1187..1303
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1316..1432
                     /gene="CDC20"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gagcggagag tttaagaagt gtaaatccgc actgctaagg ccagtctgga atcggagtct
       61 gctttgagct gacggtgaga ggcggctggg ccgagcgaac cgggacactc ccatggccca
      121 gttcgtgttc gagagtgacc tgcactcgct gctgcagctg gatacaccca tccccaatgc
      181 accccctgcg cgctggcagc gcaaggcgaa ggaagccgcg gggccggccc cctcgcctat
      241 gcgggcagcc aaccgatccc acagtgccgg caggaccccg ggccgaactc ccggcaaatc
      301 cagctccaag aatcagacca ctcccagcaa acctggcggt gaccgctata tcccccatcg
      361 cagtgcttcc cagatggagg tcgctagctt cctgctgagc aaggagaacc agcccgaaga
      421 cagtcagacg cccaccaaga aggaacatca gaaagcatgg gctttgaacc tgaacggttt
      481 tgatgtggag gaagccaaga tccttcggct cagtggaaaa ccacaaaatg ccccagaggg
      541 ttaccagaac agactgaaag tgctctatag ccagaaggcc acgcccagct ccagcaggaa
      601 gacctgccgt tacattcctt ccctgccaga ccgcatcctg gacgcccctg aaatccggaa
      661 tgactactac ctgaaccttg tggattggag ctctgggaat gtactggctg tggctttgga
      721 caacagtgtg tacttgtgga gtgctagctc tggtgacatc ctgcagctgc tgcaattgga
      781 gcagcctggg gactatgtat cttctgtggc ctggatcaaa gagggcaact acctggctgt
      841 gggcaccagc agtgctgagg tgcagctatg ggatgtgcaa cagcagaaac ggcttcgaaa
      901 catgaccagt cattctgccc gagtgggctc cctctgttgg aatagctata tcctgtccag
      961 tggctcacgc tctggccaca tccaccacca tgatgttagg gtagcagaac accatgtggc
     1021 cacattgagt ggccacagcc aggaagtgtg tgggctgcgc tgggccccag atggacgaca
     1081 tttagccagt ggcggcaacg ataacttggt caacgtgtgg cctagtgctc ctggagaagg
     1141 tggctgggtt cctctgcaga cattcaccca gcatcaaggg gctgtcaagg ctgtagcttg
     1201 gtgtccctgg cagcccaatg tcctggcaac tggaggaggc acaagtgatc gacacattcg
     1261 tatctggaat gtctgctctg gggcctgtct gagtgctgtg gatgcccatt cccaggtgtg
     1321 ctccatcctc tggtctcccc actacaagga gctcatctca ggccatggct ttgcccagaa
     1381 ccagctggtt atttggaagt acccaaccat ggccaaggtg gctgagctga aaggtcacac
     1441 agcccgggtc cttagtctga ccatgagccc agatggggct acagtggcat cagcagcagc
     1501 agatgagacc ctgcgtctgt ggcgctgctt tgagttggac gctgcccggc ggcgcgagcg
     1561 ggagaaggcc agtgcagcca aaagcagcct tatccaccaa ggcatccgtt aagaccaact
     1621 cagctcagtt ttttgtgttt tttttgtttt tttttttttt tttttacttt tctaataaag
     1681 tcacatctcc ctctt
//
LOCUS       XM_032650281            1516 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ELOVL fatty acid elongase 1 (ELOVL1),
            mRNA.
ACCESSION   XM_032650281
VERSION     XM_032650281.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1516
                     /gene="ELOVL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 mRNAs, 4 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762821"
     CDS             62..1006
                     /gene="ELOVL1"
                     /codon_start=1
                     /product="elongation of very long chain fatty acids
                     protein 1"
                     /protein_id="XP_032506172.1"
                     /db_xref="GeneID:116762821"
                     /translation="MRKWQAAWPWGHLSGPAPSEPSTTARLAPTESLARMEAVVNLYQ
                     EMMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRSFMVVYNF
                     SLVAFSLYIVYEFLMSGWLSTYTWRCDPVDFSSNPEALRMVRVAWLFLFSKFIELMDT
                     VIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKFAPGGMGSFHAMINSSVHVIMYLYYG
                     LSALGPVAQPYLWWKKHMTAVQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGT
                     IFFLLFSNFWYQSYTKGKRLPRVLQQNGAPGTAKVKAN"
     misc_feature    233..952
                     /gene="ELOVL1"
                     /note="GNS1/SUR4 family; Region: ELO; pfam01151"
                     /db_xref="CDD:460083"
ORIGIN      
        1 gcgggcgccc cccacccggc ccgccccctc cccctctggt gacagaaagt cggcccagca
       61 gatgaggaag tggcaggcag cctggccctg gggacacctc tccggccctg ctccttccga
      121 gccctccacg actgcccgcc tggcccccac tgagtcctta gccaggatgg aggctgttgt
      181 gaacttgtac caggagatga tgaagcatgc agatccccgg atccagggct accctctgat
      241 ggggtccccc ctgctaatga cctctatcct cctgacctac gtgtacttcg ttctttcact
      301 tgggcctcgc atcatggcca atcggaagcc cttccagctc cgcagcttca tggttgtcta
      361 caacttctca ctggtggcat tttccctcta catcgtctat gagttcctga tgtctggctg
      421 gctgagcacc tacacctggc gctgcgaccc agtggacttt tccagcaacc ccgaggcact
      481 gaggatggtc cgagtggcct ggctcttcct gttctccaag ttcattgagc tgatggacac
      541 ggtgatcttt attctccgga agaaagatgg acaggtgacc ttcctacatg tcttccacca
      601 ctcagtgctt ccctggagct ggtggtgggg ggtaaaattt gctccaggag gaatgggctc
      661 tttccacgcc atgatcaact cctctgtgca cgtcatcatg tacctgtact atggattgtc
      721 tgcccttggc cctgtggctc agccctacct ttggtggaaa aagcacatga cagctgtcca
      781 gctgatccag tttgtcctgg tctcgctgca catctcccag tactacttca tgcccagctg
      841 taactaccag tatccaatca tcatccacct catctggatg tacggcacca tcttcttctt
      901 gctcttctcc aatttctggt atcagtctta caccaaaggc aagcggctgc cccgtgtact
      961 tcagcaaaat ggagctccag gtactgccaa agtcaaggct aactgagaaa catggcctag
     1021 ctaggcgccc acctaagtgc ctcaggactg cacctcaggc agcatctgtc attgtcctcc
     1081 ccagctacac ctgtgaccag ggcttatgtg gtcaggactg agcaggtgac aggtcctctg
     1141 ctccccacag ctggtacaca gggaccactg cttccattcc tcctcttctg gccagcccca
     1201 gggacaaggc ctcgttgccc tctgccactc cagagccagg ggccgaaagg gctggacact
     1261 tatttccccc tccctgcctt acacgtggga gaggagcact cagggctggt ccccaccagg
     1321 gtcgtgtggc ctttttcctc acactgaaga ggtcagcaat aatctgtcac tgtggaccca
     1381 ggctccctcc ttctccaccc cacactgaag taggagcttc ttggccaaag gtcagggtgg
     1441 tgggggcctg ggaatacagc ctgtggaggc tgctcactcc tttatgtctt cattaaaagt
     1501 gacagaggaa accgct
//
LOCUS       XM_032650293            2948 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MPL proto-oncogene, thrombopoietin
            receptor (MPL), mRNA.
ACCESSION   XM_032650293
VERSION     XM_032650293.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2948
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2948
                     /gene="MPL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762830"
     CDS             1..1938
                     /gene="MPL"
                     /codon_start=1
                     /product="thrombopoietin receptor"
                     /protein_id="XP_032506184.1"
                     /db_xref="GeneID:116762830"
                     /translation="MPSWALLVVISCLLPAPQNLAQVTSQDASLLASDSESLNCFSRT
                     FEDLTCFWDEEEAAPSEIYQLLYAYPGEKPRACPLSSQRVLPFGTRYVCQFPAQDEVR
                     LFSQLHLWVKNVFLNQNLTQRVLSVDTVGLPGPPSLIKAMGGSQPGELQISWEVPAPE
                     ISEFLRHELRYGPKDPRNSTGPTVTLLLSTETCCPALRRPNLAPAPDQSPCAQPVMPQ
                     QDVPEQTPTTREAPSLTVKGGSCLISGLQPGNSYWLQLRSQPDGVSLRGSWGSWSLPV
                     TVDLPGDAVEIGLQCFTLDLKNVTCQWQQQDHASSQGFFYHSRAWCCPRDRDPIWEKC
                     EEQKKNPGSQPSQFSRCHFKSRNDSAIHILVEVTTAQGAIHSYLGSPFWIHQAVLIPT
                     PNLHWREVSSGQLELEWQHPSPWAAQETCYQLRYTGEGHQDWKVLEPPLGAQGETLEL
                     RPRSRYRVQLRARLHGPTFHGPWSAWSDPLRVETASETAWIFLVTALLLVLGVSALLG
                     LLLLRWQFPAHYRSLRHALWPSVPDLHRVLGQYLRDTAALSPPKAAVSDACEEVEPSL
                     LEIVPRSSEKTPLPLCSSQAQMDYRGLQPSCLGTMPLSVCPRMAETGSYCTTHIANHS
                     YLPLSCWQAPRSQYPGQIQTL"
     misc_feature    73..384
                     /gene="MPL"
                     /note="Erythropoietin receptor, ligand binding; Region:
                     EpoR_lig-bind; pfam09067"
                     /db_xref="CDD:401127"
     misc_feature    1180..1452
                     /gene="MPL"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1417..1422,1426..1431)
                     /gene="MPL"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
ORIGIN      
        1 atgccctcct gggccctctt ggtggtcatc tcctgcctcc tcccggcccc ccaaaacctg
       61 gcacaagtca ccagccaaga tgcctccttg ctggcctcgg actcagagtc cctgaactgt
      121 ttctcccgaa catttgagga cctcacttgc ttctgggatg aggaagaagc agcgcccagt
      181 gaaatatatc agctgctgta tgcctaccca ggggagaagc cccgtgcctg ccccctgagt
      241 tcccagcgtg tgctgccctt tggaacccgg tacgtgtgcc agtttccagc ccaggatgaa
      301 gttcgcctct tctctcaact gcacctctgg gtgaagaacg tgtttctgaa ccagaatctg
      361 acccagcggg tgctctctgt ggatactgtg ggcctgccag gtccccccag cctcatcaag
      421 gccatgggag ggagccagcc aggggaactt cagatcagct gggaggtccc agctcccgaa
      481 atcagtgaat ttctgaggca tgaactccgc tatggcccta aggatccaag gaactccact
      541 ggtcccacag tcacactgct gctgtccaca gaaacctgct gcccagctct gcggagacca
      601 aacctagccc cagctccgga ccagtctcca tgtgctcagc ccgtgatgcc ccaacaggat
      661 gtacccgagc agacccccac aactagagaa gctccatctc tgacagtgaa gggtggaagc
      721 tgcctcatct cagggctcca gcctggtaac tcctactggc tccagctacg cagccaacct
      781 gatggggtct ccctccgcgg ctcttgggga tcttggtccc tccctgtgac cgtggacctg
      841 cctggggatg cagtggaaat tggactgcaa tgctttacct tggacctgaa gaatgttacc
      901 tgtcagtggc agcaacagga ccatgctagc tcccaaggct tcttctacca cagcagggca
      961 tggtgctgcc ccagagacag ggaccccatc tgggagaagt gtgaagagca gaagaaaaat
     1021 ccaggatcac agccctccca gttctcccgc tgccacttca agtcacgaaa tgacagtgct
     1081 attcacatcc ttgtggaggt gaccacagcc cagggtgcca ttcacagcta cctgggctcc
     1141 cctttctgga tccatcaggc tgtgctcatt cccactccaa acttacactg gagggaggtc
     1201 tccagtgggc agctggaact ggaatggcag catccatcac cctgggcagc acaagagacc
     1261 tgctatcagc tccgatacac aggagaaggc catcaggact ggaaggtgct agagccgcct
     1321 ctcggggccc agggagagac cttagagctg cgcccgcgct cccgctaccg tgtacagttg
     1381 cgcgccaggc tccacggccc caccttccat gggccctgga gcgcctggtc cgacccactg
     1441 agggtggaaa ccgcctccga gaccgcctgg atctttttgg tgaccgctct gctcctggtg
     1501 ctgggcgtca gcgccctcct gggcctgctg ctgctgaggt ggcagtttcc tgctcactac
     1561 aggagcctga ggcatgccct gtggccctca gttccagacc tgcaccgggt cctaggccag
     1621 taccttaggg atactgcagc cctgagtccg cccaaggctg cagtctcaga tgcctgtgag
     1681 gaagtggaac ccagcctcct tgaaattgta cctaggtcct cagagaagac tcccttgccc
     1741 ctatgttcct cccaggccca gatggactac cgaggattgc agccttcttg cctggggacc
     1801 atgcccctgt ctgtgtgccc acgcatggct gagacagggt cctactgcac cactcacatc
     1861 gccaaccatt cctacttacc actcagctgc tggcaggccc ctcgctccca gtaccctgga
     1921 cagatccaaa ccctctagtc cttccttctg aacttcccta cccaccccat cccaacaaca
     1981 caaccatctc agacctcaca tccttcccgg ttgtctaccc tcctagctgg gcttcataac
     2041 actgatcttt cagtactgct gctgacataa atccaggaca aggttcattt gagtaagccc
     2101 ctctaaattt cacctccttt ctctctcctc tttaatgcca aactccttga aaaggagtct
     2161 ccacttcctg actcccattt gctcctcaga ctacttcaat tcattcccct actaccactc
     2221 cgctaatgaa actactcagg caaaactcac ctcaaatttt tcttatcaca agatccaatc
     2281 agattttgtt aattctcaat ccatttgatc tctctgttgt catttgtcat ggtgactact
     2341 catttctcct ttaaattctc tcctccatgg cttgcatacg tcaccatctc tcctggctct
     2401 gctcgggcct ttctgagtat actaatagtt aagagcataa gctctggagt cagagctggg
     2461 ttcaattcct gtctttccca tttgctagct gtatggcctt gagcaaggaa agtctttgag
     2521 ccttaatttt ctcatctata aaacaggggt aataacagaa ccccatagag ttgtaaagag
     2581 catttagtga gataatctaa gtaaagcaca gtaactagga catagtaagt tttgatatgt
     2641 ctaaactatg gtaattattc cttcctaatc ttatcctgga atctcttcca ctccttaatt
     2701 actgcagtcc ctcaagagtc cattcttaac agtctccaat cccatcggtt ctcattgcct
     2761 ttcctatatg ctgaccattc caaagttctt atctccagcc cagacctcta ctacagcacc
     2821 tgtactggtt tatgcaagta accgtttaca tgtctgtctt ctattactag attgtgagct
     2881 ccttgagggc aagggctgtg atttatttgt cttccctccg acccccaccc cccagcacct
     2941 ggagtagt
//
LOCUS       XM_032650305            2062 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD5 molecule like (CD5L), mRNA.
ACCESSION   XM_032650305
VERSION     XM_032650305.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2062
                     /gene="CD5L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116762835"
     CDS             32..1057
                     /gene="CD5L"
                     /codon_start=1
                     /product="CD5 antigen-like"
                     /protein_id="XP_032506196.1"
                     /db_xref="GeneID:116762835"
                     /translation="MALLFFLILAFCTGLGLSESSSRTRLVGGHHRCEGRVEVERNGQ
                     WGTVCDDGWGMKDVEVVCRELGCGAATGTPSGTLYKPLAEKDQKVLIQAVNCSGMESK
                     LIHCEQEEDVFDCSHNEDAGAMCEIPETVRLVGGPGRCKGRVEVKHQEQWGTVCKAGW
                     NLSAAKVVCWQLGCGRATLTQRCCNKDTQGQGPIWLSKVSCSGQEESLQDCPSALWGK
                     NNCTHDEDTCVECEDPFDLRLVGGDTRCSGRLEVLHKGEWGSVCDDGWGEKEEKVVCK
                     QLGCGESILLSAKARRNFGLGAGRIWLDDVHCSGKEQSLEQCRHRFWGHHNCNHKEDV
                     AVTCLEL"
     misc_feature    104..406
                     /gene="CD5L"
                     /note="Scavenger receptor Cys-rich; Region: SR;
                     smart00202"
                     /db_xref="CDD:214555"
     misc_feature    422..724
                     /gene="CD5L"
                     /note="Scavenger receptor Cys-rich; Region: SR;
                     smart00202"
                     /db_xref="CDD:214555"
     misc_feature    740..1048
                     /gene="CD5L"
                     /note="Scavenger receptor Cys-rich; Region: SR;
                     smart00202"
                     /db_xref="CDD:214555"
ORIGIN      
        1 attcagctca ccatctccag ctacctgggt catggctttg ctattcttct tgatccttgc
       61 cttttgtact ggacttggcc tctcagagtc ttcatccaga acgcgactgg tgggaggtca
      121 ccatcgctgt gaagggcggg tggaagtgga acggaacggc cagtggggca ccgtgtgtga
      181 tgacggctgg ggcatgaaag atgtggaagt ggtgtgccgg gagctgggct gtggagcagc
      241 cacagggaca cccagtggta ctttatataa gccattggca gaaaaagacc aaaaagtcct
      301 catccaagcg gtcaactgca gtgggatgga aagtaaactg attcactgtg agcaagagga
      361 agatgttttt gattgttccc acaatgagga tgcaggggct atgtgtgaaa ttccagagac
      421 tgtgcggctg gttggtggcc ctggtcgctg caaagggcga gtggaggtga agcaccaaga
      481 gcaatggggc accgtgtgca aagcaggctg gaatctctca gccgcgaagg tggtgtgctg
      541 gcagctgggg tgtgggaggg ccacactgac ccaaagatgc tgcaacaagg atacacaggg
      601 ccaagggccc atctggctga gtaaggtgtc atgctcagga caagaagaaa gccttcaaga
      661 ttgcccttct gcgctctggg ggaagaataa ctgcacccat gatgaggaca catgtgtcga
      721 atgcgaagat ccctttgact tgaggctggt aggaggagac acccgctgct ctgggagact
      781 ggaggtgctg cataagggcg aatggggttc tgtctgtgat gatggctggg gagaaaagga
      841 ggaaaaggtg gtgtgcaagc aactgggctg tggggagtca atcttgctat ctgccaaagc
      901 ccggagaaac tttggccttg gagctggccg catctggcta gatgatgttc attgctcagg
      961 gaaggagcag tccctggaac agtgtcggca caggttctgg gggcatcaca actgcaacca
     1021 caaggaagat gtggccgtga cctgcttaga actgtagcct ggccttcttg atgcttgacc
     1081 tgatccctgc aggccctgag tgtcttttga tttctcctgg gccagaatgt cctggcatga
     1141 gcactgagtc tgcaggctta gctaccattc cctcagcccc tcagcaggaa tctgaacact
     1201 ctgcttatac tttgctctca gagccaagca cccctatcat tgcctggaga tatgagttgt
     1261 tgaattctct cttgctgggg aagatgagct cccagttgcc ctctcctcgc tgctgaccct
     1321 ttggcattgg ttctggcctc tcctgcttct tctcaaccag cctggcatcc ccaggcttgt
     1381 tactttgacc actacaggcc cttttcaaga aaagatctat gtctgtaaag aacatgaaag
     1441 gaatgagaca acaaaagaac atttgaaggg gaatatgggt taacaattac atgaaagttg
     1501 ggggaaagct tagagtcttt ttgaacgctt tttcttaacc ttcaggtgat cacaacaatt
     1561 aacatctgaa tattctccta ttctttgatg agagtagacc attctttcaa gagcagtgca
     1621 gtatcctgta atcctagacc ttttcacgac acttggaaaa aaatatcaca ctccctgaat
     1681 gcccataata aaatatcttt gttgaccatc catgtacatc ttgccaacat ggtgtacatt
     1741 gaacaagaag aatctcataa attcactatt ccaaggaaaa atgtattggc tatggagctg
     1801 ccactaggag aagggaaagg aagagatgca gacagagttt agggaggtcc agagtcatgc
     1861 ctcatgccaa ccagatgata taattttaat tctgtcaact cggactttag gatctgcaag
     1921 tctgaggcaa gatagaatga tactaaggag agaatcatga cttaattcta aaaactgaca
     1981 actttagatt ctgaggccaa gtcgagtacc tgtaatatgc ctacctttat gctttctaat
     2041 aaagtagttc tcacagtctc aa
//
LOCUS       XM_032650314             342 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cornifin-like (LOC116762845), transcript
            variant X1, mRNA.
ACCESSION   XM_032650314
VERSION     XM_032650314.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..342
                     /gene="LOC116762845"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins"
                     /db_xref="GeneID:116762845"
     CDS             1..342
                     /gene="LOC116762845"
                     /codon_start=1
                     /product="cornifin-like isoform X1"
                     /protein_id="XP_032506205.1"
                     /db_xref="GeneID:116762845"
                     /translation="MSSYQQKKPCIPPHEPQQQEVKQPCQPPPQEPCVPKNKEPCHTK
                     MPEPCHPKIPEPCQPKFPEPCHPKVPEPCHTKVPEPCHPKAPEPGHPKVPEPCPSPVI
                     PGPAQQKTKQK"
     misc_feature    <43..333
                     /gene="LOC116762845"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 atgagttcct accagcagaa gaagccctgc atcccacccc acgagcctca gcagcaggag
       61 gtgaaacagc cctgccagcc tccaccccag gaaccatgtg tccccaaaaa caaggagcca
      121 tgccacacca aaatgccaga gccctgtcac cccaagattc ctgagccatg ccaacccaag
      181 tttccagagc cctgtcaccc caaagttcca gagccctgcc acaccaaagt tccagagccc
      241 tgccacccca aagctccaga gcccggccac cccaaagttc cagagccatg tccttcacca
      301 gttatcccgg ggccagctca gcagaagacc aagcagaagt aa
//
LOCUS       XM_032650322             285 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cornifin-like (LOC116762845), transcript
            variant X2, mRNA.
ACCESSION   XM_032650322
VERSION     XM_032650322.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..285
                     /gene="LOC116762845"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins"
                     /db_xref="GeneID:116762845"
     CDS             1..285
                     /gene="LOC116762845"
                     /codon_start=1
                     /product="cornifin-like isoform X2"
                     /protein_id="XP_032506213.1"
                     /db_xref="GeneID:116762845"
                     /translation="MSSYQQKKPCIPPHEPQQQEVKQPCQPPPQEPCVPKNKEPCHTK
                     MPEPCHPKIPEPCQPKFPEPCHPKPGHPKVPEPCPSPVIPGPAQQKTKQK"
     misc_feature    49..>270
                     /gene="LOC116762845"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 atgagttcct accagcagaa gaagccctgc atcccacccc acgagcctca gcagcaggag
       61 gtgaaacagc cctgccagcc tccaccccag gaaccatgtg tccccaaaaa caaggagcca
      121 tgccacacca aaatgccaga gccctgtcac cccaagattc ctgagccatg ccaacccaag
      181 tttccagagc cctgtcaccc caaacccggc caccccaaag ttccagagcc atgtccttca
      241 ccagttatcc cggggccagc tcagcagaag accaagcaga agtaa
//
LOCUS       XM_032650335            2815 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CTP synthase 1 (CTPS1), transcript
            variant X1, mRNA.
ACCESSION   XM_032650335
VERSION     XM_032650335.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2815
                     /gene="CTPS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 13 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762856"
     CDS             42..1925
                     /gene="CTPS1"
                     /codon_start=1
                     /product="CTP synthase 1 isoform X1"
                     /protein_id="XP_032506226.1"
                     /db_xref="GeneID:116762856"
                     /translation="MRSGWCTGCRGLSVSVTLSALKPTAGFKAGLRSTSKMKYILVTG
                     GVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGE
                     VDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEW
                     VMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSL
                     VPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ
                     VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPIERQPRKMLMKWKEMADRYDRLLET
                     CSIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLEPSTLQEEPVRYHE
                     AWQKLCSAHGVLVPGGFGVRGTEGKIQAISWARKQKKPFLGVCLGMQLAVVEFSRNVL
                     GWQDANSTEFDPNTNHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTTNSVMRKLYGDAD
                     YLEERHRHRFEVNPVLKKSLEEQGLKFVGQDVEGERMEIVELEDHPFFVGVQYHPEFL
                     SRPIKPSPPYFGLLLASVGRLPHYLQKGCRLSPRDTYSDRSGSSSPDSEITELKFPSI
                     NHD"
     misc_feature    150..1817
                     /gene="CTPS1"
                     /note="CTP synthase; Region: PLN02327"
                     /db_xref="CDD:215186"
ORIGIN      
        1 gcaccgccta gagcccgcct ccgtgaaaga ctgcccggcg catgcggtcg ggctggtgca
       61 ctggctgccg ggggctcagc gtgagcgtca ccctctcagc tcttaagccg acggcaggat
      121 ttaaagccgg cctcaggtca acaagtaaaa tgaagtacat tctagttact ggtggtgtca
      181 tatcaggaat tggaaaagga atcatcgcca gcagtgtggg cacaatactc aagtcatgtg
      241 gtttacatgt aacctccatt aaaattgacc cgtatattaa cattgatgca ggaacattct
      301 ctccttatga gcatggtgag gtttttgtgc tggatgatgg tggggaagta gaccttgacc
      361 tgggtaacta tgaacgtttc cttgacatcc gcctcaccaa ggacaataat ctgactactg
      421 gaaagatcta tcagtacgtc attaacaagg aacgcaaagg agattacttg gggaaaaccg
      481 tccaagtcgt cccgcacatc acagatgcaa tccaggagtg ggtaatgaga caggcgttaa
      541 tacccgtgga tgaagatggc ctggagcctc aagtgtgtgt tattgagctt ggtgggacag
      601 taggagatat agaaagcatg ccctttattg aggccttccg tcaattccag ttcaaggtca
      661 aaagagagaa cttctgtaac attcatgtca gtctcgttcc tcagccaagt tcaacagggg
      721 aacagaagac taaacccacc cagaacagtg ttcgggaact cagagggctt gggctttccc
      781 cagatctggt tgtgtgcagg tgctcaaatc ctctcgacac gtcagtgaaa gagaaaatat
      841 caatgttctg ccatgttgaa cctgaacaag tgatctgtgt ccacgatgtc tcgtccatct
      901 accgagtccc cttgttgtta gaagagcagg gggttgtaga ttattttctc cggagacttg
      961 accttcctat tgagaggcag ccacggaaaa tgctgatgaa gtggaaagag atggctgaca
     1021 gatatgatcg cctgctggag acctgctcta ttgccctcgt gggcaaatac acgaagttct
     1081 cagactcgta tgcctccgtc attaaagctc tggagcattc tgcactggcc ataaaccaca
     1141 aattggaaat caagtacata gattccacgg acctggagcc gagcaccttg caggaggagc
     1201 ccgtgcgcta ccacgaggcc tggcagaagc tgtgcagcgc tcatggggtg ctggttccag
     1261 gaggatttgg tgtccgaggg actgaaggaa aaatccaagc gatctcctgg gctcggaaac
     1321 agaagaagcc ttttttgggc gtgtgcttag gaatgcagtt ggcagtggtt gaattttcaa
     1381 gaaatgtgct gggatggcaa gatgccaatt ctacggagtt tgaccctaac accaatcatc
     1441 ccgtggtcat agacatgcca gaacacaacc ctggccagat gggcggaacc atgaggctgg
     1501 gcaagaggag aaccctgttc cagaccacga actctgtcat gaggaaactc tacggagatg
     1561 cagattacct ggaagagagg caccgccaca gatttgaggt gaatccagtc ttgaaaaaga
     1621 gtttggagga gcaaggcttg aagtttgttg gccaagatgt tgaaggagag agaatggaaa
     1681 tcgtggagtt ggaagatcat ccctttttcg ttggagttca gtatcaccct gagttcctgt
     1741 ccagacctat caagccttcc ccaccgtact ttggcctcct cctggcctcc gtggggaggc
     1801 tcccacatta cctccagaaa ggctgcaggc tctcgcccag ggacacctac agtgacagaa
     1861 gtgggagcag ctcccctgac tctgaaatca ctgaactgaa gtttccatca ataaatcatg
     1921 actgatggta acggatgatt cttgaagagc gcctttggac ttcaggagtt tacagctttg
     1981 attttacatt cagcttttga cacttccttt aaattatgtt tttattaaga tgattttatt
     2041 ttgagggaag gtatttgtga cttgcatgtc ccgccgtgtg tcccggctcc cgcacgctgt
     2101 gcggaccggt gtcccacact ctcctttgcg gtcctccagc ctcgggcgag aagcaggaca
     2161 tctgggcgga acaggtgatg gccgggtgcc aggggagccc atcggtcacc gcgcttctcc
     2221 agccaccttg cgtcactgtg gcttcgagcg tgtagctgtt ccttcccccg atgccgaggc
     2281 cattataaaa ggtggaccgt gcggcctgtg tgggcagaga ggggtgagtc cagctggtgc
     2341 tcacaaccca gtgctggaac ccgagggcac tgcttgagca agagccgtga aaccagaaac
     2401 agagtcggct ctgccctgtg ctggaggact cgttgtccaa aaggacggtc agtttggcgt
     2461 cacacagaac ggcaagaact ctctctctga agtctgagtt tagaatccac gtcctcttta
     2521 gaagccgcgc ttctcgggaa tcactccttg catcaagggg tcacttaaca aagaatcttt
     2581 tggggaaact gcctctaaac ccctctcata tggggttttg ctcgagggaa cttgacagct
     2641 ttgctcaagg ggacttttgc tttccagaat ggtgttacta cggttgaaat gcaatgtatg
     2701 aaaagctatt ttcttaatgt ggtataacga caggcagagc tgcgtgccca ttatatcctg
     2761 gctggactcg gtgtatactc taacttaaga aataaataac gcagagcaag agaca
//
LOCUS       XM_032650345            2810 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CTP synthase 1 (CTPS1), transcript
            variant X2, mRNA.
ACCESSION   XM_032650345
VERSION     XM_032650345.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2810
                     /gene="CTPS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116762856"
     CDS             42..1925
                     /gene="CTPS1"
                     /codon_start=1
                     /product="CTP synthase 1 isoform X1"
                     /protein_id="XP_032506236.1"
                     /db_xref="GeneID:116762856"
                     /translation="MRSGWCTGCRGLSVSVTLSALKPTAGFKAGLRSTSKMKYILVTG
                     GVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGE
                     VDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEW
                     VMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSL
                     VPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ
                     VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPIERQPRKMLMKWKEMADRYDRLLET
                     CSIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLEPSTLQEEPVRYHE
                     AWQKLCSAHGVLVPGGFGVRGTEGKIQAISWARKQKKPFLGVCLGMQLAVVEFSRNVL
                     GWQDANSTEFDPNTNHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTTNSVMRKLYGDAD
                     YLEERHRHRFEVNPVLKKSLEEQGLKFVGQDVEGERMEIVELEDHPFFVGVQYHPEFL
                     SRPIKPSPPYFGLLLASVGRLPHYLQKGCRLSPRDTYSDRSGSSSPDSEITELKFPSI
                     NHD"
     misc_feature    150..1817
                     /gene="CTPS1"
                     /note="CTP synthase; Region: PLN02327"
                     /db_xref="CDD:215186"
ORIGIN      
        1 gcaccgccta gagcccgcct ccgtgaaaga ctgcccggcg catgcggtcg ggctggtgca
       61 ctggctgccg ggggctcagc gtgagcgtca ccctctcagc tcttaagccg acggcaggat
      121 ttaaagccgg cctcaggtca acaagtaaaa tgaagtacat tctagttact ggtggtgtca
      181 tatcaggaat tggaaaagga atcatcgcca gcagtgtggg cacaatactc aagtcatgtg
      241 gtttacatgt aacctccatt aaaattgacc cgtatattaa cattgatgca ggaacattct
      301 ctccttatga gcatggtgag gtttttgtgc tggatgatgg tggggaagta gaccttgacc
      361 tgggtaacta tgaacgtttc cttgacatcc gcctcaccaa ggacaataat ctgactactg
      421 gaaagatcta tcagtacgtc attaacaagg aacgcaaagg agattacttg gggaaaaccg
      481 tccaagtcgt cccgcacatc acagatgcaa tccaggagtg ggtaatgaga caggcgttaa
      541 tacccgtgga tgaagatggc ctggagcctc aagtgtgtgt tattgagctt ggtgggacag
      601 taggagatat agaaagcatg ccctttattg aggccttccg tcaattccag ttcaaggtca
      661 aaagagagaa cttctgtaac attcatgtca gtctcgttcc tcagccaagt tcaacagggg
      721 aacagaagac taaacccacc cagaacagtg ttcgggaact cagagggctt gggctttccc
      781 cagatctggt tgtgtgcagg tgctcaaatc ctctcgacac gtcagtgaaa gagaaaatat
      841 caatgttctg ccatgttgaa cctgaacaag tgatctgtgt ccacgatgtc tcgtccatct
      901 accgagtccc cttgttgtta gaagagcagg gggttgtaga ttattttctc cggagacttg
      961 accttcctat tgagaggcag ccacggaaaa tgctgatgaa gtggaaagag atggctgaca
     1021 gatatgatcg cctgctggag acctgctcta ttgccctcgt gggcaaatac acgaagttct
     1081 cagactcgta tgcctccgtc attaaagctc tggagcattc tgcactggcc ataaaccaca
     1141 aattggaaat caagtacata gattccacgg acctggagcc gagcaccttg caggaggagc
     1201 ccgtgcgcta ccacgaggcc tggcagaagc tgtgcagcgc tcatggggtg ctggttccag
     1261 gaggatttgg tgtccgaggg actgaaggaa aaatccaagc gatctcctgg gctcggaaac
     1321 agaagaagcc ttttttgggc gtgtgcttag gaatgcagtt ggcagtggtt gaattttcaa
     1381 gaaatgtgct gggatggcaa gatgccaatt ctacggagtt tgaccctaac accaatcatc
     1441 ccgtggtcat agacatgcca gaacacaacc ctggccagat gggcggaacc atgaggctgg
     1501 gcaagaggag aaccctgttc cagaccacga actctgtcat gaggaaactc tacggagatg
     1561 cagattacct ggaagagagg caccgccaca gatttgaggt gaatccagtc ttgaaaaaga
     1621 gtttggagga gcaaggcttg aagtttgttg gccaagatgt tgaaggagag agaatggaaa
     1681 tcgtggagtt ggaagatcat ccctttttcg ttggagttca gtatcaccct gagttcctgt
     1741 ccagacctat caagccttcc ccaccgtact ttggcctcct cctggcctcc gtggggaggc
     1801 tcccacatta cctccagaaa ggctgcaggc tctcgcccag ggacacctac agtgacagaa
     1861 gtgggagcag ctcccctgac tctgaaatca ctgaactgaa gtttccatca ataaatcatg
     1921 actgatggga tgattcttga agagcgcctt tggacttcag gagtttacag ctttgatttt
     1981 acattcagct tttgacactt cctttaaatt atgtttttat taagatgatt ttattttgag
     2041 ggaaggtatt tgtgacttgc atgtcccgcc gtgtgtcccg gctcccgcac gctgtgcgga
     2101 ccggtgtccc acactctcct ttgcggtcct ccagcctcgg gcgagaagca ggacatctgg
     2161 gcggaacagg tgatggccgg gtgccagggg agcccatcgg tcaccgcgct tctccagcca
     2221 ccttgcgtca ctgtggcttc gagcgtgtag ctgttccttc ccccgatgcc gaggccatta
     2281 taaaaggtgg accgtgcggc ctgtgtgggc agagaggggt gagtccagct ggtgctcaca
     2341 acccagtgct ggaacccgag ggcactgctt gagcaagagc cgtgaaacca gaaacagagt
     2401 cggctctgcc ctgtgctgga ggactcgttg tccaaaagga cggtcagttt ggcgtcacac
     2461 agaacggcaa gaactctctc tctgaagtct gagtttagaa tccacgtcct ctttagaagc
     2521 cgcgcttctc gggaatcact ccttgcatca aggggtcact taacaaagaa tcttttgggg
     2581 aaactgcctc taaacccctc tcatatgggg ttttgctcga gggaacttga cagctttgct
     2641 caaggggact tttgctttcc agaatggtgt tactacggtt gaaatgcaat gtatgaaaag
     2701 ctattttctt aatgtggtat aacgacaggc agagctgcgt gcccattata tcctggctgg
     2761 actcggtgta tactctaact taagaaataa ataacgcaga gcaagagaca
//
LOCUS       XM_032650355            2908 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CTP synthase 1 (CTPS1), transcript
            variant X3, mRNA.
ACCESSION   XM_032650355
VERSION     XM_032650355.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2908
                     /gene="CTPS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 13 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762856"
     CDS             242..2017
                     /gene="CTPS1"
                     /codon_start=1
                     /product="CTP synthase 1 isoform X2"
                     /protein_id="XP_032506246.1"
                     /db_xref="GeneID:116762856"
                     /translation="MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYIN
                     IDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKER
                     KGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFI
                     EAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRC
                     SNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPIER
                     QPRKMLMKWKEMADRYDRLLETCSIALVGKYTKFSDSYASVIKALEHSALAINHKLEI
                     KYIDSTDLEPSTLQEEPVRYHEAWQKLCSAHGVLVPGGFGVRGTEGKIQAISWARKQK
                     KPFLGVCLGMQLAVVEFSRNVLGWQDANSTEFDPNTNHPVVIDMPEHNPGQMGGTMRL
                     GKRRTLFQTTNSVMRKLYGDADYLEERHRHRFEVNPVLKKSLEEQGLKFVGQDVEGER
                     MEIVELEDHPFFVGVQYHPEFLSRPIKPSPPYFGLLLASVGRLPHYLQKGCRLSPRDT
                     YSDRSGSSSPDSEITELKFPSINHD"
     misc_feature    242..1909
                     /gene="CTPS1"
                     /note="CTP synthase; Region: PLN02327"
                     /db_xref="CDD:215186"
ORIGIN      
        1 actgcccggc gcatgcggtc gggctggtgc actggctgcc gggggctcag cgtgagcgtc
       61 accctctcag ctcttaagcc gacggcagga tttaaagccg gcctcaggta ggctaactcc
      121 agggatcccg cgggagctgt tcttccgtgc aggagtcgga ggcaggagca gagcccggcg
      181 cgggacagcc ccaccgccgg tgacagacac agctcccacc aatcaggggt caacaagtaa
      241 aatgaagtac attctagtta ctggtggtgt catatcagga attggaaaag gaatcatcgc
      301 cagcagtgtg ggcacaatac tcaagtcatg tggtttacat gtaacctcca ttaaaattga
      361 cccgtatatt aacattgatg caggaacatt ctctccttat gagcatggtg aggtttttgt
      421 gctggatgat ggtggggaag tagaccttga cctgggtaac tatgaacgtt tccttgacat
      481 ccgcctcacc aaggacaata atctgactac tggaaagatc tatcagtacg tcattaacaa
      541 ggaacgcaaa ggagattact tggggaaaac cgtccaagtc gtcccgcaca tcacagatgc
      601 aatccaggag tgggtaatga gacaggcgtt aatacccgtg gatgaagatg gcctggagcc
      661 tcaagtgtgt gttattgagc ttggtgggac agtaggagat atagaaagca tgccctttat
      721 tgaggccttc cgtcaattcc agttcaaggt caaaagagag aacttctgta acattcatgt
      781 cagtctcgtt cctcagccaa gttcaacagg ggaacagaag actaaaccca cccagaacag
      841 tgttcgggaa ctcagagggc ttgggctttc cccagatctg gttgtgtgca ggtgctcaaa
      901 tcctctcgac acgtcagtga aagagaaaat atcaatgttc tgccatgttg aacctgaaca
      961 agtgatctgt gtccacgatg tctcgtccat ctaccgagtc cccttgttgt tagaagagca
     1021 gggggttgta gattattttc tccggagact tgaccttcct attgagaggc agccacggaa
     1081 aatgctgatg aagtggaaag agatggctga cagatatgat cgcctgctgg agacctgctc
     1141 tattgccctc gtgggcaaat acacgaagtt ctcagactcg tatgcctccg tcattaaagc
     1201 tctggagcat tctgcactgg ccataaacca caaattggaa atcaagtaca tagattccac
     1261 ggacctggag ccgagcacct tgcaggagga gcccgtgcgc taccacgagg cctggcagaa
     1321 gctgtgcagc gctcatgggg tgctggttcc aggaggattt ggtgtccgag ggactgaagg
     1381 aaaaatccaa gcgatctcct gggctcggaa acagaagaag ccttttttgg gcgtgtgctt
     1441 aggaatgcag ttggcagtgg ttgaattttc aagaaatgtg ctgggatggc aagatgccaa
     1501 ttctacggag tttgacccta acaccaatca tcccgtggtc atagacatgc cagaacacaa
     1561 ccctggccag atgggcggaa ccatgaggct gggcaagagg agaaccctgt tccagaccac
     1621 gaactctgtc atgaggaaac tctacggaga tgcagattac ctggaagaga ggcaccgcca
     1681 cagatttgag gtgaatccag tcttgaaaaa gagtttggag gagcaaggct tgaagtttgt
     1741 tggccaagat gttgaaggag agagaatgga aatcgtggag ttggaagatc atcccttttt
     1801 cgttggagtt cagtatcacc ctgagttcct gtccagacct atcaagcctt ccccaccgta
     1861 ctttggcctc ctcctggcct ccgtggggag gctcccacat tacctccaga aaggctgcag
     1921 gctctcgccc agggacacct acagtgacag aagtgggagc agctcccctg actctgaaat
     1981 cactgaactg aagtttccat caataaatca tgactgatgg taacggatga ttcttgaaga
     2041 gcgcctttgg acttcaggag tttacagctt tgattttaca ttcagctttt gacacttcct
     2101 ttaaattatg tttttattaa gatgatttta ttttgaggga aggtatttgt gacttgcatg
     2161 tcccgccgtg tgtcccggct cccgcacgct gtgcggaccg gtgtcccaca ctctcctttg
     2221 cggtcctcca gcctcgggcg agaagcagga catctgggcg gaacaggtga tggccgggtg
     2281 ccaggggagc ccatcggtca ccgcgcttct ccagccacct tgcgtcactg tggcttcgag
     2341 cgtgtagctg ttccttcccc cgatgccgag gccattataa aaggtggacc gtgcggcctg
     2401 tgtgggcaga gaggggtgag tccagctggt gctcacaacc cagtgctgga acccgagggc
     2461 actgcttgag caagagccgt gaaaccagaa acagagtcgg ctctgccctg tgctggagga
     2521 ctcgttgtcc aaaaggacgg tcagtttggc gtcacacaga acggcaagaa ctctctctct
     2581 gaagtctgag tttagaatcc acgtcctctt tagaagccgc gcttctcggg aatcactcct
     2641 tgcatcaagg ggtcacttaa caaagaatct tttggggaaa ctgcctctaa acccctctca
     2701 tatggggttt tgctcgaggg aacttgacag ctttgctcaa ggggactttt gctttccaga
     2761 atggtgttac tacggttgaa atgcaatgta tgaaaagcta ttttcttaat gtggtataac
     2821 gacaggcaga gctgcgtgcc cattatatcc tggctggact cggtgtatac tctaacttaa
     2881 gaaataaata acgcagagca agagacac
//
LOCUS       XM_032650363            2295 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CTP synthase 1 (CTPS1), transcript
            variant X4, mRNA.
ACCESSION   XM_032650363
VERSION     XM_032650363.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2295
                     /gene="CTPS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762856"
     CDS             4..1404
                     /gene="CTPS1"
                     /codon_start=1
                     /product="CTP synthase 1 isoform X3"
                     /protein_id="XP_032506254.1"
                     /db_xref="GeneID:116762856"
                     /translation="MRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFK
                     VKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVK
                     EKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPIERQPRKMLMKW
                     KEMADRYDRLLETCSIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLE
                     PSTLQEEPVRYHEAWQKLCSAHGVLVPGGFGVRGTEGKIQAISWARKQKKPFLGVCLG
                     MQLAVVEFSRNVLGWQDANSTEFDPNTNHPVVIDMPEHNPGQMGGTMRLGKRRTLFQT
                     TNSVMRKLYGDADYLEERHRHRFEVNPVLKKSLEEQGLKFVGQDVEGERMEIVELEDH
                     PFFVGVQYHPEFLSRPIKPSPPYFGLLLASVGRLPHYLQKGCRLSPRDTYSDRSGSSS
                     PDSEITELKFPSINHD"
     misc_feature    <7..1296
                     /gene="CTPS1"
                     /note="CTP synthase; Region: PLN02327"
                     /db_xref="CDD:215186"
ORIGIN      
        1 gtaatgagac aggcgttaat acccgtggat gaagatggcc tggagcctca agtgtgtgtt
       61 attgagcttg gtgggacagt aggagatata gaaagcatgc cctttattga ggccttccgt
      121 caattccagt tcaaggtcaa aagagagaac ttctgtaaca ttcatgtcag tctcgttcct
      181 cagccaagtt caacagggga acagaagact aaacccaccc agaacagtgt tcgggaactc
      241 agagggcttg ggctttcccc agatctggtt gtgtgcaggt gctcaaatcc tctcgacacg
      301 tcagtgaaag agaaaatatc aatgttctgc catgttgaac ctgaacaagt gatctgtgtc
      361 cacgatgtct cgtccatcta ccgagtcccc ttgttgttag aagagcaggg ggttgtagat
      421 tattttctcc ggagacttga ccttcctatt gagaggcagc cacggaaaat gctgatgaag
      481 tggaaagaga tggctgacag atatgatcgc ctgctggaga cctgctctat tgccctcgtg
      541 ggcaaataca cgaagttctc agactcgtat gcctccgtca ttaaagctct ggagcattct
      601 gcactggcca taaaccacaa attggaaatc aagtacatag attccacgga cctggagccg
      661 agcaccttgc aggaggagcc cgtgcgctac cacgaggcct ggcagaagct gtgcagcgct
      721 catggggtgc tggttccagg aggatttggt gtccgaggga ctgaaggaaa aatccaagcg
      781 atctcctggg ctcggaaaca gaagaagcct tttttgggcg tgtgcttagg aatgcagttg
      841 gcagtggttg aattttcaag aaatgtgctg ggatggcaag atgccaattc tacggagttt
      901 gaccctaaca ccaatcatcc cgtggtcata gacatgccag aacacaaccc tggccagatg
      961 ggcggaacca tgaggctggg caagaggaga accctgttcc agaccacgaa ctctgtcatg
     1021 aggaaactct acggagatgc agattacctg gaagagaggc accgccacag atttgaggtg
     1081 aatccagtct tgaaaaagag tttggaggag caaggcttga agtttgttgg ccaagatgtt
     1141 gaaggagaga gaatggaaat cgtggagttg gaagatcatc cctttttcgt tggagttcag
     1201 tatcaccctg agttcctgtc cagacctatc aagccttccc caccgtactt tggcctcctc
     1261 ctggcctccg tggggaggct cccacattac ctccagaaag gctgcaggct ctcgcccagg
     1321 gacacctaca gtgacagaag tgggagcagc tcccctgact ctgaaatcac tgaactgaag
     1381 tttccatcaa taaatcatga ctgatggtaa cggatgattc ttgaagagcg cctttggact
     1441 tcaggagttt acagctttga ttttacattc agcttttgac acttccttta aattatgttt
     1501 ttattaagat gattttattt tgagggaagg tatttgtgac ttgcatgtcc cgccgtgtgt
     1561 cccggctccc gcacgctgtg cggaccggtg tcccacactc tcctttgcgg tcctccagcc
     1621 tcgggcgaga agcaggacat ctgggcggaa caggtgatgg ccgggtgcca ggggagccca
     1681 tcggtcaccg cgcttctcca gccaccttgc gtcactgtgg cttcgagcgt gtagctgttc
     1741 cttcccccga tgccgaggcc attataaaag gtggaccgtg cggcctgtgt gggcagagag
     1801 gggtgagtcc agctggtgct cacaacccag tgctggaacc cgagggcact gcttgagcaa
     1861 gagccgtgaa accagaaaca gagtcggctc tgccctgtgc tggaggactc gttgtccaaa
     1921 aggacggtca gtttggcgtc acacagaacg gcaagaactc tctctctgaa gtctgagttt
     1981 agaatccacg tcctctttag aagccgcgct tctcgggaat cactccttgc atcaaggggt
     2041 cacttaacaa agaatctttt ggggaaactg cctctaaacc cctctcatat ggggttttgc
     2101 tcgagggaac ttgacagctt tgctcaaggg gacttttgct ttccagaatg gtgttactac
     2161 ggttgaaatg caatgtatga aaagctattt tcttaatgtg gtataacgac aggcagagct
     2221 gcgtgcccat tatatcctgg ctggactcgg tgtatactct aacttaagaa ataaataacg
     2281 cagagcaaga gacac
//
LOCUS       XM_032650388            6514 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adenylate kinase 4 (AK4), transcript
            variant X1, mRNA.
ACCESSION   XM_032650388
VERSION     XM_032650388.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6514
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6514
                     /gene="AK4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 15 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762875"
     CDS             206..877
                     /gene="AK4"
                     /codon_start=1
                     /product="adenylate kinase 4, mitochondrial isoform X1"
                     /protein_id="XP_032506279.1"
                     /db_xref="GeneID:116762875"
                     /translation="MASKLLRAVILGPPGSGKGTVCQRIAENFGLQHLSSGHFLRENI
                     KANTEVGDMAKQYIEKSLLVPDHVITRLMLSELENRRGQHWLLDGFPRTLVQAEALDK
                     ICDLDLVITLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDITGEPLVQQE
                     DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLFSNKITPIQ
                     SKEAY"
     misc_feature    233..769
                     /gene="AK4"
                     /note="Adenylate kinase; Region: ADK; pfam00406"
                     /db_xref="CDD:395329"
ORIGIN      
        1 atttgactgc tccgggtgga gaggcaccga actccggctc cttacagcgg agagcgcatc
       61 cgtcagccct cggcggaggg gcggcggcaa gtccccgcgc gagctcaggg tgtcagaggc
      121 tgaggcagaa gaagcaaagt tcccggggct tcttcgaggc cgctgtccgg gttgccagtt
      181 cggcttctcc ctcctcgcca aggcaatggc ttccaaactc ctgcgcgcgg tcatccttgg
      241 gccgcccggc tcgggcaagg gcaccgtgtg tcagaggatc gccgagaact ttggcctcca
      301 gcatctctcc agcggccact tcttgcggga gaacatcaag gccaacacgg aagttggtga
      361 tatggcaaag cagtacatag agaaaagtct tttggttcca gatcacgtga tcacacgcct
      421 catgctgtca gagctggaga acaggcgcgg ccagcactgg ctactggatg gttttcctag
      481 aacattagtt caggccgaag ccttggacaa aatatgtgac ctggacctag tgatcacttt
      541 gaacattcca tttgaaacgc tcaaagatcg tctcagccga cgctggattc accctcctag
      601 tgggagggta tataacctgg acttcaaccc gcctcatgta catgggatcg atgacatcac
      661 tggtgaacca ttggtacagc aggaggatga caaacctgaa gcagttgctg ccagactaag
      721 acagtacaag gatgtggcaa aaccagtcat tgaattatac aagagccgag gagtactcca
      781 ccaattttct ggaacggaga ctaacaaaat ctggccctat gtttacacac ttttctcgaa
      841 caagatcaca cctattcagt ccaaagaagc ctactgagcc ctccagtgga agaaccagga
      901 agatatggtc atccattcaa ttgtttgtgt agtgttggtg ccatgtccca attagcagct
      961 agctgagata gcttgcagca tcttttctag tttaaatggt gaactgctat gaaaactaat
     1021 gaatagaaag agttaatgaa gaggctcttc tctgcctttc taaaagaggg gctacctgca
     1081 catgtttaag acgtccctgc acatgtctca agtccttcac aagaaagaaa gcaagtacag
     1141 gctggatttc aagtggtgta taacccaagc tctagctgat tttcgacagc catgttgtcg
     1201 ccatagtggc cttttcacac gtgatggtgg tggtccctgg ttctccccag cgcccaaagg
     1261 ctgttgaacc atagcactag gaggcctgag aatgccaagg gctgtagctg cctttgtccc
     1321 aggttctctg gtatgtgtcc tcctggtgac agtgggattg aagctaagct ctcagtggtt
     1381 gcttctccgg ccttgagtca ctctccacag ttcatttttt ctcttaggaa tgacgccttc
     1441 tctctgcatc catactccat agaatctctc ctttccagtc atcctggaat gaaaggattt
     1501 ggcttctact acttttatta gacatctgtt ttctcccttc ctagactatt aagtaataca
     1561 gattgttact gcttttatcc ctctcaaatt cctttctaag agctgagaac taggggactg
     1621 tgttgaatct ctttatgcac taggaactga gctatgtgga gggtctattt aaactgctgg
     1681 tctgactctc atgggttgac actgctcctt tcttttattg tggcaaaata aaaccctcag
     1741 agtctttagg gaaccctgaa aaactggcaa atattcacct ccataaatgt taaaagatca
     1801 tatcatatct tacatatgga agtaaataag accatatgga attactggac taaatgaata
     1861 gtttagcttt ttagtcaaga caaaaaaaat gtattttgaa aatgctgcta aatattgatg
     1921 ctgacagtgt ttttctcctg tgagtgaccc aagcatatta taaatagatg gtgaagggaa
     1981 tggagcctgt ggggttgagg aaaacgttgc actagccatg cctagactgt tgatgacagg
     2041 tttacgatta tgggatttga caaaaatcgt aattttttat tctattccaa agatgctttc
     2101 tatagggtgg ccattacgtc tagaaatata gatcatacca ttttgtcatt cactgaaatg
     2161 tagtatcagt aaaccattta tttaagattt gcctggtttc cagacttggt ggccatcttt
     2221 tataattctt gctctcctct gggaaggaca atgaaattta ttcctgttgc cttaaaaata
     2281 gatattcctc ctcatgcatc gtgattgtcc ccagggaggg tcctttacta tccctgggag
     2341 tgacttttgt ctaactcttc gtactggtga gaaaacaaaa gaagcctatt tcagcatagg
     2401 tggtgttgaa acacattatt tattttccga agatgtcgca gtgaatccac agtcaattca
     2461 ctgaccaatg gattctgtat ggtagccgta catcttcctt acaaatactg cccccactct
     2521 tgccagtctc tctccctttg tcccttcatg tgaatgttct ttggctacct tagtggaaac
     2581 acagaccagt ttcctcctta tcctctgaat caaagtgaaa gaagattatt tactttttag
     2641 gtttatgcat ttaaaatgcc cagttcaggt atttgaaaca tcagtgcatg atagtgactt
     2701 tttagaagac ttgtgtttga atgccagttg atagggacag ggtaaaaatc agacaggcag
     2761 atacagctca ggtttcctgg ggaattgggc aaagaaaaac aagtctgcta tgaggaaaat
     2821 tgcttctgcc atagagacaa tttccacaaa gtgggaaaag tagaaagtta aggttgttat
     2881 atggatcatt cagaagagga aagtgtgtgc ttttttggaa gcagaaaaat cttcagacct
     2941 ctttcttcac ttctttcaat gtttagcaga tgttccagtg taaccactgg ctttggagtt
     3001 tttcaaagag gcatgggaaa cggcctaggt gacccctgat tccatattct ctgctcctcc
     3061 atccttccct cccttctccc ttccagcaaa atagatgctt agtgccagtg tcagaaccac
     3121 tcagtgtgtc tccacactgc gctgtttctg aggtggccct gcagttgagg gcaatcacct
     3181 ttgctaggtg agaccaataa aagccaaata ctgtttctgt gggctttgaa agatgatact
     3241 tgtttcatgt tcagtggcct aaaaaatctg tttctggttt tcttcaacaa agtctcgttt
     3301 ttccttcagt gattttgtaa aaaaaataaa attttcttga aaatattttg acaaaggtca
     3361 aattaaaggg atatctttct ttagttttcc ttctactacc acacatgagg ttccattaca
     3421 gttaggcaaa aagagtagtt tggctggttt ctaagattcc tatgtggcct caccttctgt
     3481 gactctagcc agctctgcgt tcagtttgct ttccactatc ctgaccggct tcccgcttac
     3541 ttggaacttg aaaatattgc cgtgtttaat acactctaac actaaagcaa gcatataata
     3601 ggtaccattt atcgaaggcc tactgagtgc tatgtacagt tttaggacct ttacaaacat
     3661 ctcatttact ctttccagca tcctttgaga taggcacgat tccatgttta taaacaaaga
     3721 aggcgagggt cagaaaagta aagcatcttg ccctggctcc tgctgccagc gcacagtgta
     3781 gtcaggactc aaagccaggt tttcctgact ctgctcctgg atgttaacta cctgcgtcct
     3841 gtcccaagca aggcagggca ctgagctgct tgattttgct tatatttcca agtggcctca
     3901 tgtcaaaaat agcagagttc actatggtga cattcagctc tgtatgggac tgttcccttt
     3961 tttttttttt tttttaactt ttgcttaagc aaaggaagct gctagaggag agtctgagcc
     4021 cttgatcctc cataactact catttgtaaa taaagtgaaa ggctgtcaaa gtagacttgg
     4081 atccaggctg atctgtggca gaggcaagct caaggtcttc acctaccctt tcagtctcca
     4141 tggcattgtg cccctgaagg gacctttatg cttgagccac cccagccgtg gtgctcacac
     4201 acagacctgg actcctgcga attcaccaga cactactccc tttgcttccc tgacatcaga
     4261 acaaatccct ccctcactcc caccccgaga caaggccctg atagtaactg atcttcccta
     4321 aagggctagc aggtgaacag atggtgactg agcccctaat atagggtcac ccttgacttt
     4381 catactatct tccctgtatg acattacacg tgaacatgat cctgaatgcc aaatccacac
     4441 ctttgtccac cctctgatgt ggtggcagtg cttatcatgc acggttccgg cagaagtggg
     4501 atattggctt cccgtctcac cttccttcca cggggtcact tctggcatcc tccagcagcc
     4561 cagcttcacc caggctgtgc ccctctcttt ggtagggaag ggaaaaaggt aagaataggc
     4621 ataggtgaca gaggattctt gggagagagg tgatggtgtg gccttttctg ccattactag
     4681 attgttgaca ggataaattt agatagaaag atgcctatat aaacccatga atagggtttt
     4741 tgtaaaattt agttcactgg gacctgagtt caatatctga ctttggctat ttgtttaaag
     4801 aggtcttacc atctgctggg ggtggggagt gtctttgccc aaatcataaa gtcagcagat
     4861 ttccaaatat attaaggtat cagcatattc ttggtagtta ctgtttattg gtacttggtg
     4921 ctaagtgtac tgcatccatt gtgtaattaa atcctccaca attaccctat gtaatagata
     4981 gtattatctc agtgatcttg cctccttgta tttaaaaact gaaataatcc tgtctactta
     5041 accttttcct ttacctatag ggattaatca ggaaattcaa aaaggccttt tttgtacgtt
     5101 tctgtagttt gagctccctg ttctcatgaa taggtaaaac aatatatttg ctcccacctg
     5161 gaatccttgc ttttggctct ggtgctgaga caggaaatgg gcactgggtg ggtcctggtg
     5221 gtagttgcac actgtatata cagagggcat gtgtctctgt actctgctgg gtcacaggat
     5281 ctcgggaggc attcgtatct acctgatgaa cttcatttct tttcatttaa tagacgatat
     5341 cttttctcac tgcagtagtt ttaccagaaa ggcaattcat aagacagagg tgtattcgta
     5401 gtatgaattg ctttctctgt attctccacc attctcagta ctccttgtct atttggtgtt
     5461 tcaaaagaag agcccagtag cagagacttc tttgaataag ggaatgtggt ctggtcataa
     5521 gttatcgtcc ctttccataa atacctgacc cagtctggtt tccagatgaa aagtgtgcaa
     5581 gacccaggtg tcggggaacc atgaagctgt atttcaacta tgaggaaaaa tctgcttcct
     5641 gcatctgttg agacgtaatt acaagtgttg agaaatgccg taccttaaca aattgcacag
     5701 ttcttgccaa aataaatgcc attatctgta tgcttcaggg aattccctaa attggtgtgt
     5761 gtgtgtgtga gagagagaga gagagagaga gagagagaga atattcattc cttctttggt
     5821 gataattagg ctattccaga aagcacagtg ttaattcttg aaataaaaga tttcctattt
     5881 aaacacatgt caaagagcag cgcaccttaa agattctccc tggggttgat gtgtgtctaa
     5941 cttcgtttca taaaaccttt ctcttcttca tttaaaactt tggatataaa gtcagaaatg
     6001 tgttaaataa aaacaatgtt ttgtgtttaa tttagagaag aataaaggga agaaaaacaa
     6061 aaactcagtc tttatgtaag ctacagggtg tcagggctta gagggctttt ctagttttat
     6121 gagaatttat actactgatt tttatatgtt tttgtttttg agatgaatag atcttgggaa
     6181 attgttgagt tacagagaca tttcactatg atccctctcg agcttaaatc agttctctaa
     6241 ccgaatgaca acttgtctct ggtttactgt cctgtgagat gtcagctcca ttttcccaga
     6301 agtcatgtgt ttacgatgag tcagtgcttt tcctcagtgt gaaagttgtc gcccctcttg
     6361 atttcggtgt atgtgcttaa ttcaaagatt ctaaacctgt agtctaatct gtacatgctc
     6421 tcttaactgt taattgtgtt gttgatttta tcttgcttga agattgattc atacttttta
     6481 atttgataga aataaagttt ttttttccgc ttat
//
LOCUS       XM_032650398            6520 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adenylate kinase 4 (AK4), transcript
            variant X2, mRNA.
ACCESSION   XM_032650398
VERSION     XM_032650398.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6520
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6520
                     /gene="AK4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 16 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762875"
     CDS             210..881
                     /gene="AK4"
                     /codon_start=1
                     /product="adenylate kinase 4, mitochondrial isoform X1"
                     /protein_id="XP_032506289.1"
                     /db_xref="GeneID:116762875"
                     /translation="MASKLLRAVILGPPGSGKGTVCQRIAENFGLQHLSSGHFLRENI
                     KANTEVGDMAKQYIEKSLLVPDHVITRLMLSELENRRGQHWLLDGFPRTLVQAEALDK
                     ICDLDLVITLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDITGEPLVQQE
                     DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLFSNKITPIQ
                     SKEAY"
     misc_feature    237..773
                     /gene="AK4"
                     /note="Adenylate kinase; Region: ADK; pfam00406"
                     /db_xref="CDD:395329"
ORIGIN      
        1 ctccgaatgg gggcgggcgg aggcggcacc gcccagcggg atccgggctg gaagccttgc
       61 ggagcgccgc gtcctggcgg aggggcggcg gcaagtcccc gcgcgagctc agggtgtcag
      121 aggctgaggc agaagaagca aagttcccgg ggcttcttcg aggccgctgt ccgggttgcc
      181 agttcggctt ctccctcctc gccaaggcaa tggcttccaa actcctgcgc gcggtcatcc
      241 ttgggccgcc cggctcgggc aagggcaccg tgtgtcagag gatcgccgag aactttggcc
      301 tccagcatct ctccagcggc cacttcttgc gggagaacat caaggccaac acggaagttg
      361 gtgatatggc aaagcagtac atagagaaaa gtcttttggt tccagatcac gtgatcacac
      421 gcctcatgct gtcagagctg gagaacaggc gcggccagca ctggctactg gatggttttc
      481 ctagaacatt agttcaggcc gaagccttgg acaaaatatg tgacctggac ctagtgatca
      541 ctttgaacat tccatttgaa acgctcaaag atcgtctcag ccgacgctgg attcaccctc
      601 ctagtgggag ggtatataac ctggacttca acccgcctca tgtacatggg atcgatgaca
      661 tcactggtga accattggta cagcaggagg atgacaaacc tgaagcagtt gctgccagac
      721 taagacagta caaggatgtg gcaaaaccag tcattgaatt atacaagagc cgaggagtac
      781 tccaccaatt ttctggaacg gagactaaca aaatctggcc ctatgtttac acacttttct
      841 cgaacaagat cacacctatt cagtccaaag aagcctactg agccctccag tggaagaacc
      901 aggaagatat ggtcatccat tcaattgttt gtgtagtgtt ggtgccatgt cccaattagc
      961 agctagctga gatagcttgc agcatctttt ctagtttaaa tggtgaactg ctatgaaaac
     1021 taatgaatag aaagagttaa tgaagaggct cttctctgcc tttctaaaag aggggctacc
     1081 tgcacatgtt taagacgtcc ctgcacatgt ctcaagtcct tcacaagaaa gaaagcaagt
     1141 acaggctgga tttcaagtgg tgtataaccc aagctctagc tgattttcga cagccatgtt
     1201 gtcgccatag tggccttttc acacgtgatg gtggtggtcc ctggttctcc ccagcgccca
     1261 aaggctgttg aaccatagca ctaggaggcc tgagaatgcc aagggctgta gctgcctttg
     1321 tcccaggttc tctggtatgt gtcctcctgg tgacagtggg attgaagcta agctctcagt
     1381 ggttgcttct ccggccttga gtcactctcc acagttcatt ttttctctta ggaatgacgc
     1441 cttctctctg catccatact ccatagaatc tctcctttcc agtcatcctg gaatgaaagg
     1501 atttggcttc tactactttt attagacatc tgttttctcc cttcctagac tattaagtaa
     1561 tacagattgt tactgctttt atccctctca aattcctttc taagagctga gaactagggg
     1621 actgtgttga atctctttat gcactaggaa ctgagctatg tggagggtct atttaaactg
     1681 ctggtctgac tctcatgggt tgacactgct cctttctttt attgtggcaa aataaaaccc
     1741 tcagagtctt tagggaaccc tgaaaaactg gcaaatattc acctccataa atgttaaaag
     1801 atcatatcat atcttacata tggaagtaaa taagaccata tggaattact ggactaaatg
     1861 aatagtttag ctttttagtc aagacaaaaa aaatgtattt tgaaaatgct gctaaatatt
     1921 gatgctgaca gtgtttttct cctgtgagtg acccaagcat attataaata gatggtgaag
     1981 ggaatggagc ctgtggggtt gaggaaaacg ttgcactagc catgcctaga ctgttgatga
     2041 caggtttacg attatgggat ttgacaaaaa tcgtaatttt ttattctatt ccaaagatgc
     2101 tttctatagg gtggccatta cgtctagaaa tatagatcat accattttgt cattcactga
     2161 aatgtagtat cagtaaacca tttatttaag atttgcctgg tttccagact tggtggccat
     2221 cttttataat tcttgctctc ctctgggaag gacaatgaaa tttattcctg ttgccttaaa
     2281 aatagatatt cctcctcatg catcgtgatt gtccccaggg agggtccttt actatccctg
     2341 ggagtgactt ttgtctaact cttcgtactg gtgagaaaac aaaagaagcc tatttcagca
     2401 taggtggtgt tgaaacacat tatttatttt ccgaagatgt cgcagtgaat ccacagtcaa
     2461 ttcactgacc aatggattct gtatggtagc cgtacatctt ccttacaaat actgccccca
     2521 ctcttgccag tctctctccc tttgtccctt catgtgaatg ttctttggct accttagtgg
     2581 aaacacagac cagtttcctc cttatcctct gaatcaaagt gaaagaagat tatttacttt
     2641 ttaggtttat gcatttaaaa tgcccagttc aggtatttga aacatcagtg catgatagtg
     2701 actttttaga agacttgtgt ttgaatgcca gttgataggg acagggtaaa aatcagacag
     2761 gcagatacag ctcaggtttc ctggggaatt gggcaaagaa aaacaagtct gctatgagga
     2821 aaattgcttc tgccatagag acaatttcca caaagtggga aaagtagaaa gttaaggttg
     2881 ttatatggat cattcagaag aggaaagtgt gtgctttttt ggaagcagaa aaatcttcag
     2941 acctctttct tcacttcttt caatgtttag cagatgttcc agtgtaacca ctggctttgg
     3001 agtttttcaa agaggcatgg gaaacggcct aggtgacccc tgattccata ttctctgctc
     3061 ctccatcctt ccctcccttc tcccttccag caaaatagat gcttagtgcc agtgtcagaa
     3121 ccactcagtg tgtctccaca ctgcgctgtt tctgaggtgg ccctgcagtt gagggcaatc
     3181 acctttgcta ggtgagacca ataaaagcca aatactgttt ctgtgggctt tgaaagatga
     3241 tacttgtttc atgttcagtg gcctaaaaaa tctgtttctg gttttcttca acaaagtctc
     3301 gtttttcctt cagtgatttt gtaaaaaaaa taaaattttc ttgaaaatat tttgacaaag
     3361 gtcaaattaa agggatatct ttctttagtt ttccttctac taccacacat gaggttccat
     3421 tacagttagg caaaaagagt agtttggctg gtttctaaga ttcctatgtg gcctcacctt
     3481 ctgtgactct agccagctct gcgttcagtt tgctttccac tatcctgacc ggcttcccgc
     3541 ttacttggaa cttgaaaata ttgccgtgtt taatacactc taacactaaa gcaagcatat
     3601 aataggtacc atttatcgaa ggcctactga gtgctatgta cagttttagg acctttacaa
     3661 acatctcatt tactctttcc agcatccttt gagataggca cgattccatg tttataaaca
     3721 aagaaggcga gggtcagaaa agtaaagcat cttgccctgg ctcctgctgc cagcgcacag
     3781 tgtagtcagg actcaaagcc aggttttcct gactctgctc ctggatgtta actacctgcg
     3841 tcctgtccca agcaaggcag ggcactgagc tgcttgattt tgcttatatt tccaagtggc
     3901 ctcatgtcaa aaatagcaga gttcactatg gtgacattca gctctgtatg ggactgttcc
     3961 cttttttttt ttttttttta acttttgctt aagcaaagga agctgctaga ggagagtctg
     4021 agcccttgat cctccataac tactcatttg taaataaagt gaaaggctgt caaagtagac
     4081 ttggatccag gctgatctgt ggcagaggca agctcaaggt cttcacctac cctttcagtc
     4141 tccatggcat tgtgcccctg aagggacctt tatgcttgag ccaccccagc cgtggtgctc
     4201 acacacagac ctggactcct gcgaattcac cagacactac tccctttgct tccctgacat
     4261 cagaacaaat ccctccctca ctcccacccc gagacaaggc cctgatagta actgatcttc
     4321 cctaaagggc tagcaggtga acagatggtg actgagcccc taatataggg tcacccttga
     4381 ctttcatact atcttccctg tatgacatta cacgtgaaca tgatcctgaa tgccaaatcc
     4441 acacctttgt ccaccctctg atgtggtggc agtgcttatc atgcacggtt ccggcagaag
     4501 tgggatattg gcttcccgtc tcaccttcct tccacggggt cacttctggc atcctccagc
     4561 agcccagctt cacccaggct gtgcccctct ctttggtagg gaagggaaaa aggtaagaat
     4621 aggcataggt gacagaggat tcttgggaga gaggtgatgg tgtggccttt tctgccatta
     4681 ctagattgtt gacaggataa atttagatag aaagatgcct atataaaccc atgaataggg
     4741 tttttgtaaa atttagttca ctgggacctg agttcaatat ctgactttgg ctatttgttt
     4801 aaagaggtct taccatctgc tgggggtggg gagtgtcttt gcccaaatca taaagtcagc
     4861 agatttccaa atatattaag gtatcagcat attcttggta gttactgttt attggtactt
     4921 ggtgctaagt gtactgcatc cattgtgtaa ttaaatcctc cacaattacc ctatgtaata
     4981 gatagtatta tctcagtgat cttgcctcct tgtatttaaa aactgaaata atcctgtcta
     5041 cttaaccttt tcctttacct atagggatta atcaggaaat tcaaaaaggc cttttttgta
     5101 cgtttctgta gtttgagctc cctgttctca tgaataggta aaacaatata tttgctccca
     5161 cctggaatcc ttgcttttgg ctctggtgct gagacaggaa atgggcactg ggtgggtcct
     5221 ggtggtagtt gcacactgta tatacagagg gcatgtgtct ctgtactctg ctgggtcaca
     5281 ggatctcggg aggcattcgt atctacctga tgaacttcat ttcttttcat ttaatagacg
     5341 atatcttttc tcactgcagt agttttacca gaaaggcaat tcataagaca gaggtgtatt
     5401 cgtagtatga attgctttct ctgtattctc caccattctc agtactcctt gtctatttgg
     5461 tgtttcaaaa gaagagccca gtagcagaga cttctttgaa taagggaatg tggtctggtc
     5521 ataagttatc gtccctttcc ataaatacct gacccagtct ggtttccaga tgaaaagtgt
     5581 gcaagaccca ggtgtcgggg aaccatgaag ctgtatttca actatgagga aaaatctgct
     5641 tcctgcatct gttgagacgt aattacaagt gttgagaaat gccgtacctt aacaaattgc
     5701 acagttcttg ccaaaataaa tgccattatc tgtatgcttc agggaattcc ctaaattggt
     5761 gtgtgtgtgt gtgagagaga gagagagaga gagagagaga gagaatattc attccttctt
     5821 tggtgataat taggctattc cagaaagcac agtgttaatt cttgaaataa aagatttcct
     5881 atttaaacac atgtcaaaga gcagcgcacc ttaaagattc tccctggggt tgatgtgtgt
     5941 ctaacttcgt ttcataaaac ctttctcttc ttcatttaaa actttggata taaagtcaga
     6001 aatgtgttaa ataaaaacaa tgttttgtgt ttaatttaga gaagaataaa gggaagaaaa
     6061 acaaaaactc agtctttatg taagctacag ggtgtcaggg cttagagggc ttttctagtt
     6121 ttatgagaat ttatactact gatttttata tgtttttgtt tttgagatga atagatcttg
     6181 ggaaattgtt gagttacaga gacatttcac tatgatccct ctcgagctta aatcagttct
     6241 ctaaccgaat gacaacttgt ctctggttta ctgtcctgtg agatgtcagc tccattttcc
     6301 cagaagtcat gtgtttacga tgagtcagtg cttttcctca gtgtgaaagt tgtcgcccct
     6361 cttgatttcg gtgtatgtgc ttaattcaaa gattctaaac ctgtagtcta atctgtacat
     6421 gctctcttaa ctgttaattg tgttgttgat tttatcttgc ttgaagattg attcatactt
     6481 tttaatttga tagaaataaa gttttttttt ccgcttataa
//
LOCUS       XM_032650407            6391 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adenylate kinase 4 (AK4), transcript
            variant X3, mRNA.
ACCESSION   XM_032650407
VERSION     XM_032650407.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6391
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6391
                     /gene="AK4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762875"
     CDS             201..752
                     /gene="AK4"
                     /codon_start=1
                     /product="adenylate kinase 4, mitochondrial isoform X2"
                     /protein_id="XP_032506298.1"
                     /db_xref="GeneID:116762875"
                     /translation="MASKLLRAVILGPPGSGKGTVCQRIAENFGLQHLSSGHFLRENI
                     KANTGFPRTLVQAEALDKICDLDLVITLNIPFETLKDRLSRRWIHPPSGRVYNLDFNP
                     PHVHGIDDITGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETN
                     KIWPYVYTLFSNKITPIQSKEAY"
     misc_feature    219..713
                     /gene="AK4"
                     /note="adenylate kinase; Region: adk; TIGR01351"
                     /db_xref="CDD:273569"
ORIGIN      
        1 actgctccgg gtggagaggc accgaactcc ggctccttac agcggagagc gcatccgtca
       61 gccctcggcg gaggggcggc ggcaagtccc cgcgcgagct cagggtgtca gaggctgagg
      121 cagaagaagc aaagttcccg gggcttcttc gaggccgctg tccgggttgc cagttcggct
      181 tctccctcct cgccaaggca atggcttcca aactcctgcg cgcggtcatc cttgggccgc
      241 ccggctcggg caagggcacc gtgtgtcaga ggatcgccga gaactttggc ctccagcatc
      301 tctccagcgg ccacttcttg cgggagaaca tcaaggccaa cacgggtttt cctagaacat
      361 tagttcaggc cgaagccttg gacaaaatat gtgacctgga cctagtgatc actttgaaca
      421 ttccatttga aacgctcaaa gatcgtctca gccgacgctg gattcaccct cctagtggga
      481 gggtatataa cctggacttc aacccgcctc atgtacatgg gatcgatgac atcactggtg
      541 aaccattggt acagcaggag gatgacaaac ctgaagcagt tgctgccaga ctaagacagt
      601 acaaggatgt ggcaaaacca gtcattgaat tatacaagag ccgaggagta ctccaccaat
      661 tttctggaac ggagactaac aaaatctggc cctatgttta cacacttttc tcgaacaaga
      721 tcacacctat tcagtccaaa gaagcctact gagccctcca gtggaagaac caggaagata
      781 tggtcatcca ttcaattgtt tgtgtagtgt tggtgccatg tcccaattag cagctagctg
      841 agatagcttg cagcatcttt tctagtttaa atggtgaact gctatgaaaa ctaatgaata
      901 gaaagagtta atgaagaggc tcttctctgc ctttctaaaa gaggggctac ctgcacatgt
      961 ttaagacgtc cctgcacatg tctcaagtcc ttcacaagaa agaaagcaag tacaggctgg
     1021 atttcaagtg gtgtataacc caagctctag ctgattttcg acagccatgt tgtcgccata
     1081 gtggcctttt cacacgtgat ggtggtggtc cctggttctc cccagcgccc aaaggctgtt
     1141 gaaccatagc actaggaggc ctgagaatgc caagggctgt agctgccttt gtcccaggtt
     1201 ctctggtatg tgtcctcctg gtgacagtgg gattgaagct aagctctcag tggttgcttc
     1261 tccggccttg agtcactctc cacagttcat tttttctctt aggaatgacg ccttctctct
     1321 gcatccatac tccatagaat ctctcctttc cagtcatcct ggaatgaaag gatttggctt
     1381 ctactacttt tattagacat ctgttttctc ccttcctaga ctattaagta atacagattg
     1441 ttactgcttt tatccctctc aaattccttt ctaagagctg agaactaggg gactgtgttg
     1501 aatctcttta tgcactagga actgagctat gtggagggtc tatttaaact gctggtctga
     1561 ctctcatggg ttgacactgc tcctttcttt tattgtggca aaataaaacc ctcagagtct
     1621 ttagggaacc ctgaaaaact ggcaaatatt cacctccata aatgttaaaa gatcatatca
     1681 tatcttacat atggaagtaa ataagaccat atggaattac tggactaaat gaatagttta
     1741 gctttttagt caagacaaaa aaaatgtatt ttgaaaatgc tgctaaatat tgatgctgac
     1801 agtgtttttc tcctgtgagt gacccaagca tattataaat agatggtgaa gggaatggag
     1861 cctgtggggt tgaggaaaac gttgcactag ccatgcctag actgttgatg acaggtttac
     1921 gattatggga tttgacaaaa atcgtaattt tttattctat tccaaagatg ctttctatag
     1981 ggtggccatt acgtctagaa atatagatca taccattttg tcattcactg aaatgtagta
     2041 tcagtaaacc atttatttaa gatttgcctg gtttccagac ttggtggcca tcttttataa
     2101 ttcttgctct cctctgggaa ggacaatgaa atttattcct gttgccttaa aaatagatat
     2161 tcctcctcat gcatcgtgat tgtccccagg gagggtcctt tactatccct gggagtgact
     2221 tttgtctaac tcttcgtact ggtgagaaaa caaaagaagc ctatttcagc ataggtggtg
     2281 ttgaaacaca ttatttattt tccgaagatg tcgcagtgaa tccacagtca attcactgac
     2341 caatggattc tgtatggtag ccgtacatct tccttacaaa tactgccccc actcttgcca
     2401 gtctctctcc ctttgtccct tcatgtgaat gttctttggc taccttagtg gaaacacaga
     2461 ccagtttcct ccttatcctc tgaatcaaag tgaaagaaga ttatttactt tttaggttta
     2521 tgcatttaaa atgcccagtt caggtatttg aaacatcagt gcatgatagt gactttttag
     2581 aagacttgtg tttgaatgcc agttgatagg gacagggtaa aaatcagaca ggcagataca
     2641 gctcaggttt cctggggaat tgggcaaaga aaaacaagtc tgctatgagg aaaattgctt
     2701 ctgccataga gacaatttcc acaaagtggg aaaagtagaa agttaaggtt gttatatgga
     2761 tcattcagaa gaggaaagtg tgtgcttttt tggaagcaga aaaatcttca gacctctttc
     2821 ttcacttctt tcaatgttta gcagatgttc cagtgtaacc actggctttg gagtttttca
     2881 aagaggcatg ggaaacggcc taggtgaccc ctgattccat attctctgct cctccatcct
     2941 tccctccctt ctcccttcca gcaaaataga tgcttagtgc cagtgtcaga accactcagt
     3001 gtgtctccac actgcgctgt ttctgaggtg gccctgcagt tgagggcaat cacctttgct
     3061 aggtgagacc aataaaagcc aaatactgtt tctgtgggct ttgaaagatg atacttgttt
     3121 catgttcagt ggcctaaaaa atctgtttct ggttttcttc aacaaagtct cgtttttcct
     3181 tcagtgattt tgtaaaaaaa ataaaatttt cttgaaaata ttttgacaaa ggtcaaatta
     3241 aagggatatc tttctttagt tttccttcta ctaccacaca tgaggttcca ttacagttag
     3301 gcaaaaagag tagtttggct ggtttctaag attcctatgt ggcctcacct tctgtgactc
     3361 tagccagctc tgcgttcagt ttgctttcca ctatcctgac cggcttcccg cttacttgga
     3421 acttgaaaat attgccgtgt ttaatacact ctaacactaa agcaagcata taataggtac
     3481 catttatcga aggcctactg agtgctatgt acagttttag gacctttaca aacatctcat
     3541 ttactctttc cagcatcctt tgagataggc acgattccat gtttataaac aaagaaggcg
     3601 agggtcagaa aagtaaagca tcttgccctg gctcctgctg ccagcgcaca gtgtagtcag
     3661 gactcaaagc caggttttcc tgactctgct cctggatgtt aactacctgc gtcctgtccc
     3721 aagcaaggca gggcactgag ctgcttgatt ttgcttatat ttccaagtgg cctcatgtca
     3781 aaaatagcag agttcactat ggtgacattc agctctgtat gggactgttc cctttttttt
     3841 tttttttttt aacttttgct taagcaaagg aagctgctag aggagagtct gagcccttga
     3901 tcctccataa ctactcattt gtaaataaag tgaaaggctg tcaaagtaga cttggatcca
     3961 ggctgatctg tggcagaggc aagctcaagg tcttcaccta ccctttcagt ctccatggca
     4021 ttgtgcccct gaagggacct ttatgcttga gccaccccag ccgtggtgct cacacacaga
     4081 cctggactcc tgcgaattca ccagacacta ctccctttgc ttccctgaca tcagaacaaa
     4141 tccctccctc actcccaccc cgagacaagg ccctgatagt aactgatctt ccctaaaggg
     4201 ctagcaggtg aacagatggt gactgagccc ctaatatagg gtcacccttg actttcatac
     4261 tatcttccct gtatgacatt acacgtgaac atgatcctga atgccaaatc cacacctttg
     4321 tccaccctct gatgtggtgg cagtgcttat catgcacggt tccggcagaa gtgggatatt
     4381 ggcttcccgt ctcaccttcc ttccacgggg tcacttctgg catcctccag cagcccagct
     4441 tcacccaggc tgtgcccctc tctttggtag ggaagggaaa aaggtaagaa taggcatagg
     4501 tgacagagga ttcttgggag agaggtgatg gtgtggcctt ttctgccatt actagattgt
     4561 tgacaggata aatttagata gaaagatgcc tatataaacc catgaatagg gtttttgtaa
     4621 aatttagttc actgggacct gagttcaata tctgactttg gctatttgtt taaagaggtc
     4681 ttaccatctg ctgggggtgg ggagtgtctt tgcccaaatc ataaagtcag cagatttcca
     4741 aatatattaa ggtatcagca tattcttggt agttactgtt tattggtact tggtgctaag
     4801 tgtactgcat ccattgtgta attaaatcct ccacaattac cctatgtaat agatagtatt
     4861 atctcagtga tcttgcctcc ttgtatttaa aaactgaaat aatcctgtct acttaacctt
     4921 ttcctttacc tatagggatt aatcaggaaa ttcaaaaagg ccttttttgt acgtttctgt
     4981 agtttgagct ccctgttctc atgaataggt aaaacaatat atttgctccc acctggaatc
     5041 cttgcttttg gctctggtgc tgagacagga aatgggcact gggtgggtcc tggtggtagt
     5101 tgcacactgt atatacagag ggcatgtgtc tctgtactct gctgggtcac aggatctcgg
     5161 gaggcattcg tatctacctg atgaacttca tttcttttca tttaatagac gatatctttt
     5221 ctcactgcag tagttttacc agaaaggcaa ttcataagac agaggtgtat tcgtagtatg
     5281 aattgctttc tctgtattct ccaccattct cagtactcct tgtctatttg gtgtttcaaa
     5341 agaagagccc agtagcagag acttctttga ataagggaat gtggtctggt cataagttat
     5401 cgtccctttc cataaatacc tgacccagtc tggtttccag atgaaaagtg tgcaagaccc
     5461 aggtgtcggg gaaccatgaa gctgtatttc aactatgagg aaaaatctgc ttcctgcatc
     5521 tgttgagacg taattacaag tgttgagaaa tgccgtacct taacaaattg cacagttctt
     5581 gccaaaataa atgccattat ctgtatgctt cagggaattc cctaaattgg tgtgtgtgtg
     5641 tgtgagagag agagagagag agagagagag agagaatatt cattccttct ttggtgataa
     5701 ttaggctatt ccagaaagca cagtgttaat tcttgaaata aaagatttcc tatttaaaca
     5761 catgtcaaag agcagcgcac cttaaagatt ctccctgggg ttgatgtgtg tctaacttcg
     5821 tttcataaaa cctttctctt cttcatttaa aactttggat ataaagtcag aaatgtgtta
     5881 aataaaaaca atgttttgtg tttaatttag agaagaataa agggaagaaa aacaaaaact
     5941 cagtctttat gtaagctaca gggtgtcagg gcttagaggg cttttctagt tttatgagaa
     6001 tttatactac tgatttttat atgtttttgt ttttgagatg aatagatctt gggaaattgt
     6061 tgagttacag agacatttca ctatgatccc tctcgagctt aaatcagttc tctaaccgaa
     6121 tgacaacttg tctctggttt actgtcctgt gagatgtcag ctccattttc ccagaagtca
     6181 tgtgtttacg atgagtcagt gcttttcctc agtgtgaaag ttgtcgcccc tcttgatttc
     6241 ggtgtatgtg cttaattcaa agattctaaa cctgtagtct aatctgtaca tgctctctta
     6301 actgttaatt gtgttgttga ttttatcttg cttgaagatt gattcatact ttttaatttg
     6361 atagaaataa agtttttttt tccgcttata a
//
LOCUS       XM_032650430            1517 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chitinase 1 (CHIT1), mRNA.
ACCESSION   XM_032650430
VERSION     XM_032650430.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-25                VOSU01000011.1     154056708-154056732
            26-55               VOSU01000011.1     154058028-154058057
            56-257              VOSU01000011.1     154060287-154060488
            258-314             VOSU01000011.1     154061070-154061126
            315-480             VOSU01000011.1     154062711-154062876
            481-605             VOSU01000011.1     154063083-154063207
            606-684             VOSU01000011.1     154063891-154063969
            685-732             VOSU01000011.1     154063972-154064019
            733-918             VOSU01000011.1     154065994-154066179
            919-1032            VOSU01000011.1     154066490-154066603
            1033-1159           VOSU01000011.1     154067913-154068039
            1160-1317           VOSU01000011.1     154068565-154068722
            1318-1517           VOSU01000011.1     154068724-154068923
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1517
                     /gene="CHIT1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 3 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 Proteins, and 13% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762897"
     CDS             1..1404
                     /gene="CHIT1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 3 bases in 2 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:808..810,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: chitotriosidase-1"
                     /protein_id="XP_032506321.1"
                     /db_xref="GeneID:116762897"
                     /translation="MVWSVAWAGLMVLLTIQWGSAAKLVCYVTNWAQYRQGAARFLPK
                     DVDPKLCTHLIYAFAGMNRHQLSSIAWNAETLYKEFNSLKKMNPKLKTLLATGGWNFG
                     TQKFVDMVAIANNRQTIVNSAIRFLCKYGVDGLDLDWECTGSRGSPPSDKQCSIALGQ
                     DLASAFQQEAQASGKAHLLPSTAVPAGPHCTKVGYEGDNIALSLEFLSFMAYDFHGSR
                     EKNTGHNRPCPDERQGESGAVAEFNVDSAMQWWLQKGTPASKLILGMPTYGXSFTLAS
                     LLDTGVGAQATGPGTPGPFTKDGGLLAYYEVCSWKGASEHRIKDQKVPYAFQSNQWVG
                     FDHVESFKIKVSYLKQTGLGGVMVWTLNMDDFAGFFCNQGRYPLIKMLLLELSHPYMS
                     SGPPEPEVPAPGQLSEPEYGSSLGQDTFCQGKADGLYPNPLDWSSYYSCTGGWLFQQS
                     CPRSLVFSSSCKCCTWS"
     misc_feature    70..1146
                     /gene="CHIT1"
                     /note="This conserved domain family includes a large
                     number of catalytically inactive chitinase-like lectins
                     (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1,
                     oviductin, and AMCase (acidic mammalian chitinase), as
                     well as catalytically active...; Region:
                     GH18_chitolectin_chitotriosidase; cd02872"
                     /db_xref="CDD:119351"
     misc_feature    order(79..81,91..93,295..300,412..414,418..423,556..561,
                     628..630,634..639,652..654,802..804,808..810,892..894,
                     1075..1077)
                     /gene="CHIT1"
                     /note="active site"
                     /db_xref="CDD:119351"
     misc_feature    1258..1401
                     /gene="CHIT1"
                     /note="Chitin-binding domain type 2; Region: ChtBD2;
                     smart00494"
                     /db_xref="CDD:214696"
ORIGIN      
        1 atggtgtggt ctgtagcctg ggcaggtttg atggttctgc tgacgatcca gtggggctct
       61 gcggcaaaac tggtctgcta cgtcactaac tgggcccagt acagacaggg ggctgctcgc
      121 ttcttgccca aggatgtgga ccccaagctg tgcacccacc tcatatatgc ctttgctggc
      181 atgaacaggc accagctcag ctccatagcg tggaatgctg agacactcta caaggaattt
      241 aacagcttga agaagatgaa tcccaagctg aagacgctgc tggccactgg gggctggaac
      301 ttcggcaccc agaagttcgt ggatatggtg gctatagcca ataaccgaca gaccattgtc
      361 aactcagcca tcaggtttct gtgcaaatac ggcgttgatg gtctcgacct tgactgggag
      421 tgcacaggaa gccgggggag ccctccatca gataagcagt gttccatagc tctggggcag
      481 gacctggcca gtgcctttca gcaggaagcc caggcctcag ggaaggcaca cctcctgccg
      541 agtacagctg tcccagcagg accacactgc acaaaagttg gatacgaggg ggacaacatt
      601 gctctgagcc tggagttcct cagcttcatg gcctatgact tccatggctc tcgggagaag
      661 aacacagggc ataaccgccc ctgccctgac gagagacagg gagagagcgg ggccgtggcc
      721 gaattcaatg tggactctgc catgcaatgg tggctgcaga aagggacccc tgccagcaaa
      781 ctgatccttg gcatgcccac ctatggatga tcctttaccc tggcctcttt gttggacact
      841 ggagtggggg cccaagccac ggggcctgga actcctggcc ccttcaccaa agacggagga
      901 ctcctggctt actatgaagt ctgctcttgg aagggggcta gtgagcacag aatcaaggac
      961 cagaaggtgc cctatgcctt tcagagcaac cagtgggtcg gttttgacca tgtggagagc
     1021 ttcaaaatca aggtcagcta tctgaagcag acaggactgg gtggggtcat ggtttggaca
     1081 ctgaacatgg acgactttgc tggtttcttc tgcaaccagg gccgataccc cctcatcaag
     1141 atgcttctgc tggagctgag tcatccatat atgtcttcag gccccccaga gcctgaagtt
     1201 cctgcaccag gccagctgtc tgaacctgag tatggctcca gcctcggaca agacaccttc
     1261 tgccagggca aagctgacgg gctctacccc aaccctctgg actggtccag ctactacagt
     1321 tgtacagggg ggtggttgtt ccagcaaagc tgcccgagga gcctggtgtt cagctcctct
     1381 tgcaaatgct gcacctggag ttgagtctcc aaggcccctt cggccccagc acctgggcaa
     1441 gggcccagga ccactccata gcccacctcc ccagctctcc ctggcagttg caatctagct
     1501 tcttgtgtct ttccata
//
LOCUS       XM_032650446            2449 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adiponectin receptor 1 (ADIPOR1), mRNA.
ACCESSION   XM_032650446
VERSION     XM_032650446.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2449
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2449
                     /gene="ADIPOR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 mRNAs, 6 long SRA reads, 39
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762898"
     CDS             834..1733
                     /gene="ADIPOR1"
                     /codon_start=1
                     /product="adiponectin receptor protein 1"
                     /protein_id="XP_032506337.1"
                     /db_xref="GeneID:116762898"
                     /translation="MEKMEEFVYKVWEGRWRVIPYDVLPDWLQDNDYLLHGHRPPMPS
                     FRACFQSIFRIHTETGNIWTHLLGFVLFLFLGILTMLRPNMYFMAPLQEKVVFGMFFL
                     GAVLCLSFSWLFHTVYCHSEKVSRTFSKLDYSGIALLIMGSFVPWLYYSFYCSPQPRL
                     IYLSSVCVLGISAIIVAQWDRFATPKHRQTRAGVFLGLGLSGVVPTMHFTIAEGFVKA
                     TTVGQMGWFFLMAVMYITGAGLYAARIPERFFPGKFDIWFQSHQIFHVLVVAAAFVHF
                     YGVSNLQEFRYGLEGGCTDDSLL"
     misc_feature    990..1661
                     /gene="ADIPOR1"
                     /note="Haemolysin-III related; Region: HlyIII; pfam03006"
                     /db_xref="CDD:427098"
ORIGIN      
        1 tgcagtagca ttgccaccct gagtgaaacc aaggactccg ttacggaggg ggagaggggt
       61 ctgcatcagt ctgtgtcgcg aaatctaaga ggaagcatcg caggggaaag aacagccggg
      121 aggaggagct gctgtccgca cacggcccgg agcctctcct tgggaggcga gggctgtcgg
      181 gctgcacact gtgtgtcagg cttctgtgca gctcgggagg gcctgcagct tctttcgcgg
      241 aaccagttct gaggccctgc ttctcctggg agctgctgtg gatgcagagt ttcagtcgcc
      301 gtggcatccc cagagccagt gaacagagaa ctgcacagat ttaaattgtt aggggaatct
      361 ctgaaattcc gtctttttca ttcttttgag cattcagtga tctggaagag agaaatattc
      421 gggaaaatgg ggcaagttcg gaaccgctgt gttagcgata agggtgggat cttgggactt
      481 gcagagcatg taggcctggt gcactagtcc cgtgtgcctc gggtgccagt ctccatctgt
      541 ctgtacccca tgtgctgcgt tgggctttcg ctgcagcatt tacagagttg taaacttgtg
      601 cactctcatg ccgtaggaga aaaggccaca aggccggtgt gtgggagaga ggctgggcag
      661 agagcagtga gttggggttt ctctggatcg ctcactctgg actagggaac tcctggggtg
      721 tgtgtgtgtt tccttcgttc ctgcaggccg aagaagagcg ggcacgcgca gtgcctcagg
      781 aagaggagga ggaggtgcgg gtgctgacgc tgcccctgca agcccaccat gccatggaga
      841 agatggagga gtttgtgtac aaggtttggg aggggcgctg gagggtcatc ccgtacgacg
      901 tgctccccga ctggctgcag gacaacgact acctgttgca cggccacagg ccgcccatgc
      961 cctccttccg cgcctgcttc cagagcatct tccgcatcca cacggagacc ggcaacatct
     1021 ggacccacct gcttggtttt gtgctgtttc tctttctggg aatcctgacc atgctgagac
     1081 caaacatgta cttcatggcc ccccttcagg agaaggtggt gttcgggatg ttcttcctgg
     1141 gcgcggtgct ctgcctcagc ttctcctggc tctttcacac cgtctattgt cactcagaga
     1201 aggtctctcg gaccttttcc aagctggact actcagggat cgccctgctc atcatgggaa
     1261 gcttcgtgcc ctggctctac tactccttct actgctcccc gcagccgcgg ctcatctacc
     1321 tctccagcgt ctgtgtcctg ggcatctctg ccatcattgt ggcccagtgg gaccggtttg
     1381 ccactcctaa gcaccggcag acgagagcag gggtgttcct ggggcttggc ttgagcggcg
     1441 tcgtgcccac catgcacttt acaatcgcgg agggctttgt caaggccacc acggtgggcc
     1501 agatgggctg gttcttcctc atggctgtga tgtacatcac cggagccggc ctttatgccg
     1561 cgcggattcc tgagcgcttc ttccctggaa aattcgacat atggttccag tctcatcaga
     1621 tcttccacgt cctggtggtg gcagctgcct tcgtccactt ctacggggtc tccaaccttc
     1681 aggagttccg atacggcctg gaagggggct gtactgacga ctccctcctc tgagccgccc
     1741 cgcaaaggca cagcaggaac ttcccaagtg cttttaaaat aacttctttg ctgaagtgag
     1801 aggaagagtc tgagttgtct tgtttctaga agaaacctct tagagaattc agaaccaacc
     1861 gagcttcagc ccacttcaca ctcactgggc aataaactct ccattccctc gctgagagca
     1921 gtggggatgg gcagacatgg ccgcacgccc ctcggtaagg cgactactgt cccctcacag
     1981 agacggggct ttgaagctca cgttgagagt ttacccctcc tccaaccgtt ctggggaaaa
     2041 atgatggact gggactcttc agaaattctg tttctggaag aaactgtccc tccctcaccc
     2101 ctgtcttgac tttgtaacct ggcttataac aggccatccg tttttgtagc acacttttga
     2161 gaaacagtta caacctcgtc catctttcta gggcctggac ttgctcacac agcaggaaga
     2221 gcaaagccac caacttttac acagccggct aatcatggaa gtgtgtccag gcttcaaata
     2281 acttgagttt tcatgttttc ttggcagagt aatgtaaaat taaagtgggg aaagatattt
     2341 aatatttaat actaagcttt aaaaagaaac ctgctatcat tgctatgtat cttgatgcaa
     2401 agactatggt gataataaaa gagtacagaa gacacttggc attcaaaga
//
LOCUS       XM_032650458            1418 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ribosomal modification protein rimK like
            family member A (RIMKLA), mRNA.
ACCESSION   XM_032650458
VERSION     XM_032650458.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1418
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1418
                     /gene="RIMKLA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 87% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762902"
     CDS             1..1176
                     /gene="RIMKLA"
                     /codon_start=1
                     /product="N-acetylaspartylglutamate synthase A"
                     /protein_id="XP_032506349.1"
                     /db_xref="GeneID:116762902"
                     /translation="MCSQLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQ
                     IAVTIVGGNLGLQLNQKALTTFPDVVLVRVPTPSVQSDSDITVLRHLEKLGCRLVNRP
                     QSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHR
                     GKAVFLARDKHHLSDICHVIRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCST
                     DGRMQSNCSLGGVGVMCPLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFMVCEANA
                     NVGFLAFDQACNLDVGGIIADYTMSLLPNRQTGKMAVLPGLSSPREKKEPDSCASAQG
                     VTESVYAINSGSTSSESEPELGEIRGSSASTAGAPAPMLPDPGYNINTRIASELKLK"
     misc_feature    13..894
                     /gene="RIMKLA"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; Region: CPSase_L_D2; cl17255"
                     /db_xref="CDD:473076"
ORIGIN      
        1 atgtgctccc agctctggtt cctgacggac cggcgcatcc gcgaggacta ccctcaggtg
       61 cagatcttgc gcgccctgag gcagcgctgc tccgagcagg acgtgcgctt ccgggcggtg
      121 ctcatggacc agatcgccgt caccattgtc ggcggcaacc tcggcctgca gctgaaccag
      181 aaggcgctca ccactttccc agacgtggtg ctcgtccggg tgcccacacc ctcagtgcag
      241 tcggacagtg acatcaccgt cctgcgacac ctggagaagt tgggctgccg cttagtcaac
      301 cgcccacaga gcattctaaa ctgcatcaac aaattctgga cattccagga gctggctgga
      361 catggggtcc ccatgccgga caccttctcc tatggtgggc atgaagactt ttcaaaaatg
      421 atcgatgaag ccgagccgct gggctaccca gtcgtggtga agagcacgcg cggacaccgg
      481 ggaaaagctg tttttctcgc aagagataaa caccacctct cagacatctg ccatgtgatc
      541 cgccacgatg tgccctacct gttccagaag tacgtgaagg agtcccacgg aaaggatatc
      601 cgggtggtgg tagtaggtgg ccaggtgata ggctctatgc ttcgctgctc cacagacgga
      661 cggatgcaga gcaactgctc tctcggtggc gtgggcgtca tgtgcccact gacagaacaa
      721 ggcaagcagc tggctatcca ggtgtccaac atcctgggca tggatttctg tggcatcgat
      781 ctcctcatca tggacgatgg ctcctttatg gtgtgcgaag caaacgccaa cgtgggtttc
      841 ctagccttcg accaggcctg caacttagat gtgggcggga tcattgcaga ctacaccatg
      901 tctttgctgc ccaacaggca gaccgggaag atggctgtcc tcccaggact atctagtccc
      961 agggagaaga aagagccaga cagctgtgct tcagctcagg gagtcacaga gagcgtctac
     1021 gctatcaaca gcgggtctac ctctagcgag agtgagcctg aactgggaga gatccggggg
     1081 tcctcagcaa gcacagcggg ggccccggcc cccatgctgc ccgaccctgg ctacaacatt
     1141 aacaccagga ttgcttcaga gttaaaactt aagtgaattc ctgctttttg gcagcattga
     1201 aaccaaatcc tactgcttcc ctagtagttt tgagcaaata aaatctggac tactgtgatt
     1261 tcatttgcac agaaactaga aatcccatct gggcactcag cattctttct aacgatgatt
     1321 gaagcaaatg gcctagcttt gtggttttta taaacactaa tataaaaacc ctcaccgaga
     1381 acaacatcct gactgatgga tttgagaccg atgtctgc
//
LOCUS       XM_032650469            1108 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 52 (TMEM52), mRNA.
ACCESSION   XM_032650469
VERSION     XM_032650469.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 12% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1108
                     /gene="TMEM52"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 92% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762910"
     CDS             1..633
                     /gene="TMEM52"
                     /codon_start=1
                     /product="transmembrane protein 52"
                     /protein_id="XP_032506360.1"
                     /db_xref="GeneID:116762910"
                     /translation="MVQPGGAGQLQDRGRAEIMEQGRGLHKASRLVGSRFPSALSMFA
                     GALGDRGLLLLPPLLPLPQVALGFGEGSCDPSDRCPPQARWSSLWHVGLLLLAVLLLL
                     LCGATASCVRFCCLRKRAHAQPHLPSAPESCDLTAIPADSDSPMHSTVSSYSSVQYPL
                     GMRLPLPLGELDLDSVTPPAYSLYAPELPPSYDEAVKMAKTRQEEPPPSQ"
     misc_feature    211..630
                     /gene="TMEM52"
                     /note="Transmembrane 52; Region: TMEM52; pfam14979"
                     /db_xref="CDD:464418"
ORIGIN      
        1 atggtacagc caggaggtgc tggacagctg caggacagag gcagagcaga gatcatggag
       61 caggggcggg gcctccataa agcctcgagg ctagtgggct cgcgcttccc gtcggcgctg
      121 agcatgttcg ctggcgccct gggtgaccgc gggctcctgc tgctgccgcc gctcctgccg
      181 ctgccgcagg tggcgctggg cttcggggaa ggcagctgcg acccctcgga tcggtgcccg
      241 ccccaggccc gctggagcag cctgtggcac gtggggctcc tcctgcttgc tgtgctcctt
      301 ctgctgctgt gtggggccac ggccagctgt gtccgcttct gctgtctccg gaagcgggcg
      361 cacgcccagc cacacctgcc atcagcacct gagtcctgcg acctgacagc catccccgcg
      421 gacagcgaca gccccatgca cagcactgtg tcatcctaca gctctgtgca gtacccgctg
      481 ggcatgcggc tgcccctgcc cttgggggag ctggacctcg actctgtgac ccctcccgcc
      541 tacagcctgt atgcccctga gctgccgccc tcctacgatg aggccgtcaa gatggctaaa
      601 accagacagg aagagccacc cccttcccag tagcccagcc ccctccctga ggcctcatgc
      661 ctagaggccc ctccagggcc ccaggagtgg ggccgcaatg cccaacaccc ctggctgtag
      721 ccctggtgcc ccccggagcg ggcaggaaag ctctcccgag cctcccgatg ccaccagcca
      781 ctctgtgctc acaggggact gtgcaagggc accccagccc accctcacca tccttcccac
      841 ccgggaaggc cagccgtccg gcacattgct gcagccctgg cctcgttgct atgtaacgct
      901 gggcatctga gccagccggc cctgtgttgg ccacacacac acacacacac acacacacac
      961 acacacacac acacacgctg ctacgttcag ccctggcccc tggctcaggc ccagcaggcc
     1021 ctcagcccag atgaggcccc acagacctaa gcctcagggc tcagggcctg ctgtgatgtc
     1081 tacagctttt tggagagaga gagaataa
//
LOCUS       XM_032650482            1497 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DnaJ heat shock protein family (Hsp40)
            member C8 (DNAJC8), mRNA.
ACCESSION   XM_032650482
VERSION     XM_032650482.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1497
                     /gene="DNAJC8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 3 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762917"
     CDS             38..799
                     /gene="DNAJC8"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 8"
                     /protein_id="XP_032506373.1"
                     /db_xref="GeneID:116762917"
                     /translation="MAAPGESGASGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIE
                     RLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEA
                     VDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTNVEEDDPELFKQ
                     AVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDG
                     RVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE"
     misc_feature    206..589
                     /gene="DNAJC8"
                     /note="DnaJ-class molecular chaperone with C-terminal Zn
                     finger domain [Posttranslational modification, protein
                     turnover, chaperones]; Region: DnaJ; COG0484"
                     /db_xref="CDD:440252"
     misc_feature    206..373
                     /gene="DNAJC8"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; Region: DnaJ;
                     cd06257"
                     /db_xref="CDD:99751"
     misc_feature    order(290..298,326..328,335..340,347..352)
                     /gene="DNAJC8"
                     /note="HSP70 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99751"
ORIGIN      
        1 ttgcgcagaa gagtcacatg gtggctgggc cggggaaatg gcggctccag gagagagcgg
       61 ggcttcgggt ggcggcggta gcacggagga ggcatttatg accttctaca gtgaggtgaa
      121 acaaatagag aagagagatt cagttctaac ctccaaaaat cagattgaaa gattgactcg
      181 tcctggttcc tcctacttca atttgaaccc atttgaggtt cttcagatag atcctgaagt
      241 gacagatgaa gaaataaaaa agaggtttcg gcagttatcc atattggtgc atcctgacaa
      301 aaatcaagat gatgctgaca gagcacaaaa ggcttttgaa gctgtggaca aagcttacaa
      361 gttgctactg gatcaggaac aaaagaagag ggccctggat gtaattcagg caggaaaaga
      421 atacgtggaa cacaccgtga aagagcgaaa aaagcaatta aagaaggaag gaaagcctac
      481 aaatgtggag gaggatgatc ctgagctgtt caaacaagca gtatacaaac agaccatgaa
      541 actctttgct gagctggaaa ttaaaaggaa agagagagaa gccaaagaga tgcatgaaag
      601 gaagcgacaa agggaagaag agattgaagc tcaagaaaaa gccaaacgag aaagggagtg
      661 gcagaaaaat tttgaggaaa gtcgagatgg tcgtgtggac agctggcgaa acttccaagc
      721 aaatacaaaa ggaaagaaag agaagaagaa caggaccttc ctgagaccac ccaaagtaaa
      781 aatggagcag cgtgagtgac cgcctggggt cacagccaca gaaccttccc tcacctgtct
      841 cccctcctgc tttgaaggac tcattctttc ctcccatttt caccccaaca tagagtagta
      901 tttgcttttt agtccatttt gttttcaata caatttaata tcgatcagag taattctttt
      961 gtacattgaa atgaggggct cggtttaaaa agaaacctac ccctacccct agaccaaccg
     1021 ggatctggaa ggtgccacca ttggtgctgc cttctcttcc cacagcctgt aacttaatgt
     1081 tttgtacttc actgaattgt gatggttaga aacttcgtgt atagtttgtg gaaatcatcc
     1141 aattaaacat attgcttaaa atggtgttgc catgacttca gagacaagcc tgggccacct
     1201 taggaagccc ctttccttca gttgcttgct tctgggtgtg gcatccttcg aagccccaga
     1261 tcagatagga aggcattgga cacacagagc agtcgctcga tgtcctgacg tcccgtggtg
     1321 tttggcatgt gctttcccgt ctgactggcc agtccgtgtg gcctgaggct ccaagccacc
     1381 caaacgtgtt ccctttccga agagctagcc gtcctccctc cagggccgct gtgtcctagc
     1441 ctgtctgcgc ttgttagtgg taatgttctg tatgtgtaat aaatttttat acccgaa
//
LOCUS       XM_032650498             522 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATP synthase inhibitory factor subunit 1
            (ATP5IF1), mRNA.
ACCESSION   XM_032650498
VERSION     XM_032650498.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..522
                     /gene="ATP5IF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116762919"
     CDS             76..399
                     /gene="ATP5IF1"
                     /codon_start=1
                     /product="ATPase inhibitor, mitochondrial"
                     /protein_id="XP_032506389.1"
                     /db_xref="GeneID:116762919"
                     /translation="MAATALAARTRFGVWSVWAMQGRGFGSESADNLGSSAGAVRDAG
                     GAFGKREQAEEERYFRARAKEQLAALKKHHENEISHHMKEIEHLQKEIERHKQSIKKL
                     KHDDD"
     misc_feature    <145..357
                     /gene="ATP5IF1"
                     /note="Mitochondrial ATPase inhibitor, IATP; Region: IATP;
                     pfam04568"
                     /db_xref="CDD:428014"
ORIGIN      
        1 ctggcctgca gcgccgttag ctcctgcgaa gaagcttgca cctccggtca ctggaggggt
       61 gctgcactga cagcaatggc agccacggca ttggcggcgc ggacgcggtt cggcgtgtgg
      121 agcgtctggg ccatgcaggg ccggggcttc ggctcggaat cggcagacaa tctcggctcc
      181 agtgcgggcg cggtccggga cgccggtgga gccttcggaa aaagagagca ggccgaagag
      241 gagcgatact ttcgagctcg tgctaaagaa cagctggcag ccttgaagaa acaccatgaa
      301 aacgagatct ctcatcacat gaaggagatt gagcacctgc agaaagaaat tgagcggcac
      361 aagcagtcaa tcaagaaact aaaacatgat gatgattaag tgcacacagt tccctatagc
      421 atggctacct gttattgccc acttctctta aaccagacat agttctggtt taattaatat
      481 ctgtgtgctt ccaacaaatt ataataaatt gtcatcagtg aa
//
LOCUS       XM_032650543            1835 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kynurenine aminotransferase 3 (KYAT3),
            transcript variant X1, mRNA.
ACCESSION   XM_032650543
VERSION     XM_032650543.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1835
                     /gene="KYAT3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116762929"
     CDS             74..1441
                     /gene="KYAT3"
                     /codon_start=1
                     /product="kynurenine--oxoglutarate transaminase 3 isoform
                     X1"
                     /protein_id="XP_032506434.1"
                     /db_xref="GeneID:116762929"
                     /translation="MFLARGRLCTLGSRPKFLKTICASKILGLSTSAKMSLKFKNAKR
                     IEGLDSNVWIEFTKLAADPSVVNLGQGLPDISPPVYVKEELSKIAAIDSLNQYTRGFG
                     HPSLVKALSCLYEKFYQNQINPNKEILVTVGAYGSLFNAIQGLIDEGDEVIVIVPFYD
                     CYEPMVRMAGAIPVFIPLRSKLVDGKKWSSSDWTLDPQELASKFNSKTKAIILNTPHN
                     PLGKVYTKEELQVIADLCIKYDTLCISDEVYEWLVYTGNKHFKIATFPGMWERTITIG
                     SAGKTFSVTGWKLGWSIGPKHLIKHLQTVQQNTVYTCATPLQEALAQALWIDIKRMDD
                     PECYFNSLPKELEVKRNRMVHLLESVGLKPIVPDGGYFIIADVSLLDTDLSDMKNSNE
                     PYDYKFVKWMTKNKKLSAIPVSAFCNAETKLQFEKFVRFCFIKKDSTLDAAEEIIKAW
                     SRLKF"
     misc_feature    176..1423
                     /gene="KYAT3"
                     /note="Aspartate/methionine/tyrosine aminotransferase
                     [Amino acid transport and metabolism]; Region: AspB;
                     COG0436"
                     /db_xref="CDD:440205"
ORIGIN      
        1 gtcccgcccc atcaggctct tgaggcctcg cgggactgga actcagggag acgaggtttt
       61 cgcgcgacgg gtcatgtttt tggcccgggg gagactgtgc acccttggca gtagacctaa
      121 attcctgaag acaatttgtg cttcaaaaat ccttggactc tctacttctg ctaaaatgtc
      181 tttgaaattc aaaaatgcaa aacgaattga aggccttgat agcaatgtgt ggattgaatt
      241 taccaagttg gctgcagacc cctctgttgt gaatcttggc caaggccttc cagatatatc
      301 ccctcctgta tatgtaaagg aagaattatc aaagattgca gcaattgata gtctgaatca
      361 gtacacacgg ggctttggtc atccatcact tgtgaaagct ctgtcctgcc tatatgaaaa
      421 gttttatcaa aatcaaataa atccaaataa agaaatcctt gtgacagtag gagcatatgg
      481 atctcttttt aatgccattc aaggattaat tgatgaggga gatgaagtca tagtgatagt
      541 gcctttctat gactgctatg agcccatggt gagaatggct ggagcaatac ctgtttttat
      601 tcccctgaga tctaaacttg ttgatgggaa aaaatggtct agttctgact ggacattaga
      661 tcctcaagaa ctggcaagca aatttaattc caaaaccaaa gctataatac taaatactcc
      721 gcataacccc cttggcaagg tgtataccaa agaggaactc caagtaattg ctgacctttg
      781 catcaaatat gacacgctct gcatcagtga tgaggtttat gaatggcttg tgtatactgg
      841 aaataagcat tttaaaatag ccacttttcc aggtatgtgg gagagaacaa taacgatagg
      901 aagtgctgga aagactttca gtgtaactgg ctggaagctt ggctggtcca ttggtcctaa
      961 acacttgata aaacatttac agacagttca acaaaatacc gtttatactt gtgcgactcc
     1021 tttacaggaa gctttggctc aagctctttg gattgacatc aagcgcatgg atgacccaga
     1081 atgctacttt aattctttgc caaaagagtt agaagtgaaa agaaatcgga tggtacattt
     1141 acttgaaagt gttggcctaa aacccatagt tcctgatggg ggatacttca tcattgctga
     1201 tgtgtctttg ctagatacag acctttctga tatgaagaac agcaacgaac cttatgacta
     1261 taaatttgta aaatggatga ctaaaaataa gaaattgtca gccatcccag tttcagcatt
     1321 ctgtaatgca gagaccaaat tacagtttga gaaatttgtg cgattttgct tcattaaaaa
     1381 agacagtaca ctggatgctg ctgaagaaat catcaaggca tggagtagac tgaagttttg
     1441 atacatgcaa actgcattgt ttctattaaa tgacctagta tggaattatt tagtactgct
     1501 acttgctggg tattgaaaaa aaaatttcag tacaaatgaa atttaaagga ctatttccat
     1561 tgctaatccc actcctgaca atattcagga gatctggggt ttttttcagc tgaaatgtat
     1621 taaaacacct tttagaccat tttatgagtc agtatagtgc agtggtaaga actgtgagat
     1681 gctggttgat gcttaacctc tctgcgcttc agtttcctca taaaagggga ataaaaatag
     1741 cacctacttt atatgaagtt tgtgagttgt ttgtgaggat gaaatggact gatgtatgta
     1801 aagcctggca aacaataaac actcagctac tcttg
//
LOCUS       XM_032650552            1899 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kynurenine aminotransferase 3 (KYAT3),
            transcript variant X2, mRNA.
ACCESSION   XM_032650552
VERSION     XM_032650552.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1899
                     /gene="KYAT3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116762929"
     CDS             138..1505
                     /gene="KYAT3"
                     /codon_start=1
                     /product="kynurenine--oxoglutarate transaminase 3 isoform
                     X1"
                     /protein_id="XP_032506443.1"
                     /db_xref="GeneID:116762929"
                     /translation="MFLARGRLCTLGSRPKFLKTICASKILGLSTSAKMSLKFKNAKR
                     IEGLDSNVWIEFTKLAADPSVVNLGQGLPDISPPVYVKEELSKIAAIDSLNQYTRGFG
                     HPSLVKALSCLYEKFYQNQINPNKEILVTVGAYGSLFNAIQGLIDEGDEVIVIVPFYD
                     CYEPMVRMAGAIPVFIPLRSKLVDGKKWSSSDWTLDPQELASKFNSKTKAIILNTPHN
                     PLGKVYTKEELQVIADLCIKYDTLCISDEVYEWLVYTGNKHFKIATFPGMWERTITIG
                     SAGKTFSVTGWKLGWSIGPKHLIKHLQTVQQNTVYTCATPLQEALAQALWIDIKRMDD
                     PECYFNSLPKELEVKRNRMVHLLESVGLKPIVPDGGYFIIADVSLLDTDLSDMKNSNE
                     PYDYKFVKWMTKNKKLSAIPVSAFCNAETKLQFEKFVRFCFIKKDSTLDAAEEIIKAW
                     SRLKF"
     misc_feature    240..1487
                     /gene="KYAT3"
                     /note="Aspartate/methionine/tyrosine aminotransferase
                     [Amino acid transport and metabolism]; Region: AspB;
                     COG0436"
                     /db_xref="CDD:440205"
ORIGIN      
        1 tttgcaattt gggcattttg taaacggtgt gggaagctga caccgactcc agttcatccg
       61 taatcagtat tcttccagtt catccgtaat tggtataatc aatttaaaaa aaggaacaag
      121 gctgctcact tgccaccatg tttttggccc gggggagact gtgcaccctt ggcagtagac
      181 ctaaattcct gaagacaatt tgtgcttcaa aaatccttgg actctctact tctgctaaaa
      241 tgtctttgaa attcaaaaat gcaaaacgaa ttgaaggcct tgatagcaat gtgtggattg
      301 aatttaccaa gttggctgca gacccctctg ttgtgaatct tggccaaggc cttccagata
      361 tatcccctcc tgtatatgta aaggaagaat tatcaaagat tgcagcaatt gatagtctga
      421 atcagtacac acggggcttt ggtcatccat cacttgtgaa agctctgtcc tgcctatatg
      481 aaaagtttta tcaaaatcaa ataaatccaa ataaagaaat ccttgtgaca gtaggagcat
      541 atggatctct ttttaatgcc attcaaggat taattgatga gggagatgaa gtcatagtga
      601 tagtgccttt ctatgactgc tatgagccca tggtgagaat ggctggagca atacctgttt
      661 ttattcccct gagatctaaa cttgttgatg ggaaaaaatg gtctagttct gactggacat
      721 tagatcctca agaactggca agcaaattta attccaaaac caaagctata atactaaata
      781 ctccgcataa cccccttggc aaggtgtata ccaaagagga actccaagta attgctgacc
      841 tttgcatcaa atatgacacg ctctgcatca gtgatgaggt ttatgaatgg cttgtgtata
      901 ctggaaataa gcattttaaa atagccactt ttccaggtat gtgggagaga acaataacga
      961 taggaagtgc tggaaagact ttcagtgtaa ctggctggaa gcttggctgg tccattggtc
     1021 ctaaacactt gataaaacat ttacagacag ttcaacaaaa taccgtttat acttgtgcga
     1081 ctcctttaca ggaagctttg gctcaagctc tttggattga catcaagcgc atggatgacc
     1141 cagaatgcta ctttaattct ttgccaaaag agttagaagt gaaaagaaat cggatggtac
     1201 atttacttga aagtgttggc ctaaaaccca tagttcctga tgggggatac ttcatcattg
     1261 ctgatgtgtc tttgctagat acagaccttt ctgatatgaa gaacagcaac gaaccttatg
     1321 actataaatt tgtaaaatgg atgactaaaa ataagaaatt gtcagccatc ccagtttcag
     1381 cattctgtaa tgcagagacc aaattacagt ttgagaaatt tgtgcgattt tgcttcatta
     1441 aaaaagacag tacactggat gctgctgaag aaatcatcaa ggcatggagt agactgaagt
     1501 tttgatacat gcaaactgca ttgtttctat taaatgacct agtatggaat tatttagtac
     1561 tgctacttgc tgggtattga aaaaaaaatt tcagtacaaa tgaaatttaa aggactattt
     1621 ccattgctaa tcccactcct gacaatattc aggagatctg gggttttttt cagctgaaat
     1681 gtattaaaac accttttaga ccattttatg agtcagtata gtgcagtggt aagaactgtg
     1741 agatgctggt tgatgcttaa cctctctgcg cttcagtttc ctcataaaag gggaataaaa
     1801 atagcaccta ctttatatga agtttgtgag ttgtttgtga ggatgaaatg gactgatgta
     1861 tgtaaagcct ggcaaacaat aaacactcag ctactcttg
//
LOCUS       XM_032650559            1718 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kynurenine aminotransferase 3 (KYAT3),
            transcript variant X3, mRNA.
ACCESSION   XM_032650559
VERSION     XM_032650559.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1718
                     /gene="KYAT3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116762929"
     CDS             83..1324
                     /gene="KYAT3"
                     /codon_start=1
                     /product="kynurenine--oxoglutarate transaminase 3 isoform
                     X2"
                     /protein_id="XP_032506450.1"
                     /db_xref="GeneID:116762929"
                     /translation="MFLARGRLCTLGSRPKFLKTICASKILGLSTSAKMSLKFKNAKR
                     IEGLDSNVWIEFTKLAADPSVVNLGQGLPDISPPVYVKEELSKIAAIDSLNQYTRGFG
                     HPSLVKALSCLYEKFYQNQINPNKEILVTVGAYGSLFNAIQGLIDEGDEVIVIVPFYD
                     CYEPMVRMAGAIPVFIPLRSVYTKEELQVIADLCIKYDTLCISDEVYEWLVYTGNKHF
                     KIATFPGMWERTITIGSAGKTFSVTGWKLGWSIGPKHLIKHLQTVQQNTVYTCATPLQ
                     EALAQALWIDIKRMDDPECYFNSLPKELEVKRNRMVHLLESVGLKPIVPDGGYFIIAD
                     VSLLDTDLSDMKNSNEPYDYKFVKWMTKNKKLSAIPVSAFCNAETKLQFEKFVRFCFI
                     KKDSTLDAAEEIIKAWSRLKF"
     misc_feature    185..1306
                     /gene="KYAT3"
                     /note="Aspartate/methionine/tyrosine aminotransferase
                     [Amino acid transport and metabolism]; Region: AspB;
                     COG0436"
                     /db_xref="CDD:440205"
ORIGIN      
        1 cccacgtccg agtcccgccc catcaggctc ttgaggcctc gcgggactgg aactcaggga
       61 gacgaggttt tcgcgcgacg gcatgttttt ggcccggggg agactgtgca cccttggcag
      121 tagacctaaa ttcctgaaga caatttgtgc ttcaaaaatc cttggactct ctacttctgc
      181 taaaatgtct ttgaaattca aaaatgcaaa acgaattgaa ggccttgata gcaatgtgtg
      241 gattgaattt accaagttgg ctgcagaccc ctctgttgtg aatcttggcc aaggccttcc
      301 agatatatcc cctcctgtat atgtaaagga agaattatca aagattgcag caattgatag
      361 tctgaatcag tacacacggg gctttggtca tccatcactt gtgaaagctc tgtcctgcct
      421 atatgaaaag ttttatcaaa atcaaataaa tccaaataaa gaaatccttg tgacagtagg
      481 agcatatgga tctcttttta atgccattca aggattaatt gatgagggag atgaagtcat
      541 agtgatagtg cctttctatg actgctatga gcccatggtg agaatggctg gagcaatacc
      601 tgtttttatt cccctgagat ctgtgtatac caaagaggaa ctccaagtaa ttgctgacct
      661 ttgcatcaaa tatgacacgc tctgcatcag tgatgaggtt tatgaatggc ttgtgtatac
      721 tggaaataag cattttaaaa tagccacttt tccaggtatg tgggagagaa caataacgat
      781 aggaagtgct ggaaagactt tcagtgtaac tggctggaag cttggctggt ccattggtcc
      841 taaacacttg ataaaacatt tacagacagt tcaacaaaat accgtttata cttgtgcgac
      901 tcctttacag gaagctttgg ctcaagctct ttggattgac atcaagcgca tggatgaccc
      961 agaatgctac tttaattctt tgccaaaaga gttagaagtg aaaagaaatc ggatggtaca
     1021 tttacttgaa agtgttggcc taaaacccat agttcctgat gggggatact tcatcattgc
     1081 tgatgtgtct ttgctagata cagacctttc tgatatgaag aacagcaacg aaccttatga
     1141 ctataaattt gtaaaatgga tgactaaaaa taagaaattg tcagccatcc cagtttcagc
     1201 attctgtaat gcagagacca aattacagtt tgagaaattt gtgcgatttt gcttcattaa
     1261 aaaagacagt acactggatg ctgctgaaga aatcatcaag gcatggagta gactgaagtt
     1321 ttgatacatg caaactgcat tgtttctatt aaatgaccta gtatggaatt atttagtact
     1381 gctacttgct gggtattgaa aaaaaaattt cagtacaaat gaaatttaaa ggactatttc
     1441 cattgctaat cccactcctg acaatattca ggagatctgg ggtttttttc agctgaaatg
     1501 tattaaaaca ccttttagac cattttatga gtcagtatag tgcagtggta agaactgtga
     1561 gatgctggtt gatgcttaac ctctctgcgc ttcagtttcc tcataaaagg ggaataaaaa
     1621 tagcacctac tttatatgaa gtttgtgagt tgtttgtgag gatgaaatgg actgatgtat
     1681 gtaaagcctg gcaaacaata aacactcagc tactcttg
//
LOCUS       XM_032650561            3386 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 2D (DENND2D),
            transcript variant X1, mRNA.
ACCESSION   XM_032650561
VERSION     XM_032650561.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3386
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3386
                     /gene="DENND2D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762950"
     CDS             1504..2940
                     /gene="DENND2D"
                     /codon_start=1
                     /product="DENN domain-containing protein 2D isoform X1"
                     /protein_id="XP_032506452.1"
                     /db_xref="GeneID:116762950"
                     /translation="MPYRPKKMERQVVGGILRRFCNWLPRHGAGPPQDNLGEVVKEPE
                     RAQEHCLPNFAGGQHFFEYLLVVSLKKKPSGDDYEPTITYQFPKRENLLRGQQEEEER
                     LLGAIPLFCFPDGNEWAPLTEYPRETFSFVLTNVDGSRKIGYCRRLLPAGRGPRLPRV
                     YCIISCIGCFGLFSKILDEVEKRHQISMAVIYPFMQGLREAAFPAPGKTVTLKSFIPD
                     SGTEFISLTRPLDSHLEHVDFSSLLRCLSFEQILQIFASAVLERRIIFLAEGLSTLSQ
                     CIHAAAALLYPFSWAHTYIPVVPESLLATVCCPTPFMVGVQMRFRQEVMESPMEEVLL
                     VNLCEGTFLMSVGDEKDILPPKLQEDILESLGQGIKGSQTSEQINEHVSGPFVQFFVK
                     TVGHYASYIKREANGQGHFQERAFYKALTSKANRRFVKKFVKTQLFSLFIQEAEKSKN
                     PPAGYFQQKILEYEERKKQKKPKEKTLK"
     misc_feature    1672..1950
                     /gene="DENND2D"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    1969..2523
                     /gene="DENND2D"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2638..2835
                     /gene="DENND2D"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
ORIGIN      
        1 ctccgtggca tgtgggatct tcccagacca gggctcgaac ccatgtcctc tgcattggca
       61 aacggattct taaccactgc accaccaggg aagtccctac agtgattgaa acgttctcat
      121 ttactgtgat ccttgatctc cccaggagtc atggctgggc cactgagtac tggcttttac
      181 tagtccacag aagccaggtc tggaactatt aagagcaagc agctgtgccc cctatttcag
      241 caccacacat tcttccaaag gtctattaat tctttgcagg agtggcagac actggcacca
      301 aacccttttg ccttctagct cctcttaggg gcagcctcct ggcaaaagtc tttatctctt
      361 accacgtgca tttacacact caagggttta tgtgagaatc ccaggtgatt tactgctatt
      421 ctgtctctct tccccagcct ccagacacag caccactgga gccccagggc ccagctgctc
      481 tgctcttagc ttgtgcagaa ctgttgacct agacaaacca ggaaaaaaga ctgagcagga
      541 gtgggggtgg ggtggagatc acctagatgc tttccactcc actgagtgcc cctcaggcta
      601 ctgatgcaac cagtccccta ctgtaggcca gggagactgt cctaagtcag tgcttcctat
      661 ctgggaggag ggattctttg ctggagccct ggaacaggtc ccagtgagac aagtttgcct
      721 taggacatat tgcaggggat gaaagatgca ccattgtaga ttgtgctgag atatcaggaa
      781 ctctccaacc cagagatgga ctttgctctt tatttcacca ccaggagagg attaggttca
      841 ttttgatatc caggaattcc tcttgctaga acaatttctc cacttaaata atgaatgagg
      901 tcaagtctat tgattttaat caggggaggc aggggcaacc ttgctgtgac gagtttttgg
      961 tcctgtgctc ttgcttgcag ccttgaagtc ctggaagtcc cagagtgcag cagggggcca
     1021 tgcagaggtt atctgctgcc attaactgag ttaggaagtg aaaggttggg aatcagttat
     1081 ggagatataa gatccctgtc ctgggactga caaggcattc tccactgtca aggggttgta
     1141 aataaaccca ttgcacaacc ttcagcccag aattaaaagc ccttagccca gaagcagctg
     1201 ggctctggag gtgtttgcct atgacctttt ctctcaccac accctggggc tcttgggagg
     1261 agctgaggtc tgagctgcag tgccaggatg ctgcctctgt cagtgcaggc attctgctgc
     1321 ctttctgggt cctgtcacac aggcttcttg ctcaactttt gggtgcatag gatggaaact
     1381 gctctcccct atttggaaga cagcacgtgg cttggcttca tagagttgtg gctggagact
     1441 gaaacggcag ccgctttctc aggctttctg tagccagtct gttagaggaa aggcaagcac
     1501 tccatgcctt acaggcccaa gaagatggaa agacaagtgg taggcgggat actcaggcgc
     1561 ttctgcaact ggctgcctcg acacggagca ggacctcccc aggataatct gggggaagtt
     1621 gtaaaggaac cagaaagggc ccaggagcac tgtctaccca actttgctgg agggcagcac
     1681 ttctttgaat acctcctcgt cgtttctctc aaaaaaaagc cttcggggga tgattatgag
     1741 cccacaatca cctaccagtt ccccaagcga gagaacttgc ttcggggaca acaggaggag
     1801 gaggaacggc tgctcggagc catccccttg ttttgcttcc cagatgggaa tgagtgggcc
     1861 ccactcactg agtatcccag ggagaccttc tcgttcgttc tgaccaacgt ggatggcagc
     1921 aggaagattg gatactgcag gcgcctcttg cccgccggcc gtggtcctcg cctccccagg
     1981 gtgtactgca tcatcagctg catcggctgc ttcggcttgt tctccaagat cctggatgaa
     2041 gtggaaaaga ggcatcagat ctccatggca gtcatctacc cattcatgca gggcctccga
     2101 gaggcagcct tccctgctcc tgggaagacc gtcaccctca agagcttcat ccccgactca
     2161 ggcactgagt tcatttcgct gacgcggccc cttgactccc acctagagca cgtggatttt
     2221 agttctctgt tgcgctgtct cagttttgag cagattcttc agatctttgc ctctgcagtg
     2281 ctggagagaa gaatcatctt cctggcagaa ggtctcagca cactgtctca gtgcatccat
     2341 gctgctgcgg cgctgctcta ccccttcagc tgggcccaca cctacatccc tgttgtcccc
     2401 gagagccttc tggccactgt ctgctgcccc actcccttca tggttggagt ccaaatgcgc
     2461 tttcggcagg aggttatgga gagccccatg gaagaggtcc tgttggtgaa tctttgtgaa
     2521 ggaaccttct taatgtcagt tggtgatgaa aaagacatcc taccacccaa gcttcaggag
     2581 gacatcttag aatctcttgg tcaggggatc aaggggtcac agacttctga acaaatcaat
     2641 gagcatgttt caggcccttt tgtgcagttc tttgtcaaga ctgtgggcca ctacgcttcc
     2701 tacatcaagc gggaagcaaa tgggcaaggc cacttccaag aacgggcctt ctataaggct
     2761 ctgacctcca aggccaaccg ccgatttgtg aagaagtttg tgaagacaca gctcttttcc
     2821 cttttcatcc aggaagctga gaagagcaag aaccctcctg caggctattt ccaacagaaa
     2881 atacttgaat acgaggaacg gaagaaacag aagaaaccaa aggaaaagac tttgaaataa
     2941 gagctgtggt gaacagcagt gactagacct ataggccatt tgtggacttt ggcccctgcc
     3001 agcatggtag gatgtgaagc tctcagcccc cagaatccac agccttcttc cgagtcctgg
     3061 taaccaggtc ttgcttcaag ttggtgtcct gagtttggga tccctggaat cagctttctc
     3121 aagactttgg aaggctctga cctctgtgct cacagagctg ggcacaaagc tgcctttcct
     3181 gcagaggtga caccgggcag gagaccgtag tagaggtgtt gtagagtctt acaagttgct
     3241 gtaactgccc tcttccagga acctcttaca aaaccctcaa cagagaaagc agttgtggcc
     3301 caaaggctca gtttctccac ataaaagaag aggtctgtgg acatgtgagg ataagaataa
     3361 agatgaaaat cttcttgttc tttaaa
//
LOCUS       XM_032650562            2055 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 2D (DENND2D),
            transcript variant X2, mRNA.
ACCESSION   XM_032650562
VERSION     XM_032650562.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2055
                     /gene="DENND2D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116762950"
     CDS             211..1617
                     /gene="DENND2D"
                     /codon_start=1
                     /product="DENN domain-containing protein 2D isoform X2"
                     /protein_id="XP_032506453.1"
                     /db_xref="GeneID:116762950"
                     /translation="MDGLGRRLRASLRLKRGRGGPPQDNLGEVVKEPERAQEHCLPNF
                     AGGQHFFEYLLVVSLKKKPSGDDYEPTITYQFPKRENLLRGQQEEEERLLGAIPLFCF
                     PDGNEWAPLTEYPRETFSFVLTNVDGSRKIGYCRRLLPAGRGPRLPRVYCIISCIGCF
                     GLFSKILDEVEKRHQISMAVIYPFMQGLREAAFPAPGKTVTLKSFIPDSGTEFISLTR
                     PLDSHLEHVDFSSLLRCLSFEQILQIFASAVLERRIIFLAEGLSTLSQCIHAAAALLY
                     PFSWAHTYIPVVPESLLATVCCPTPFMVGVQMRFRQEVMESPMEEVLLVNLCEGTFLM
                     SVGDEKDILPPKLQEDILESLGQGIKGSQTSEQINEHVSGPFVQFFVKTVGHYASYIK
                     REANGQGHFQERAFYKALTSKANRRFVKKFVKTQLFSLFIQEAEKSKNPPAGYFQQKI
                     LEYEERKKQKKPKEKTLK"
     misc_feature    349..627
                     /gene="DENND2D"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    646..1200
                     /gene="DENND2D"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    1315..1512
                     /gene="DENND2D"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
ORIGIN      
        1 cgcagccctg cccggcgccc agggaagagc gggcccgccc aggtgcgccg ggggttgggc
       61 cggactccgg aaggtgtgcc gtcgcgtccc ggctcgtccc cctctgcctc tcccccgcgg
      121 aaaagtgaaa gtgtctgcca gccgaggtcg cgcattgggg gggcggggac ggcgcggacc
      181 tgggagcggg cgccgggtgt tccaggggcc atggatgggc tcggccgccg cctccgagcc
      241 agcctgagac tgaagcgcgg ccgtggggga cctccccagg ataatctggg ggaagttgta
      301 aaggaaccag aaagggccca ggagcactgt ctacccaact ttgctggagg gcagcacttc
      361 tttgaatacc tcctcgtcgt ttctctcaaa aaaaagcctt cgggggatga ttatgagccc
      421 acaatcacct accagttccc caagcgagag aacttgcttc ggggacaaca ggaggaggag
      481 gaacggctgc tcggagccat ccccttgttt tgcttcccag atgggaatga gtgggcccca
      541 ctcactgagt atcccaggga gaccttctcg ttcgttctga ccaacgtgga tggcagcagg
      601 aagattggat actgcaggcg cctcttgccc gccggccgtg gtcctcgcct ccccagggtg
      661 tactgcatca tcagctgcat cggctgcttc ggcttgttct ccaagatcct ggatgaagtg
      721 gaaaagaggc atcagatctc catggcagtc atctacccat tcatgcaggg cctccgagag
      781 gcagccttcc ctgctcctgg gaagaccgtc accctcaaga gcttcatccc cgactcaggc
      841 actgagttca tttcgctgac gcggcccctt gactcccacc tagagcacgt ggattttagt
      901 tctctgttgc gctgtctcag ttttgagcag attcttcaga tctttgcctc tgcagtgctg
      961 gagagaagaa tcatcttcct ggcagaaggt ctcagcacac tgtctcagtg catccatgct
     1021 gctgcggcgc tgctctaccc cttcagctgg gcccacacct acatccctgt tgtccccgag
     1081 agccttctgg ccactgtctg ctgccccact cccttcatgg ttggagtcca aatgcgcttt
     1141 cggcaggagg ttatggagag ccccatggaa gaggtcctgt tggtgaatct ttgtgaagga
     1201 accttcttaa tgtcagttgg tgatgaaaaa gacatcctac cacccaagct tcaggaggac
     1261 atcttagaat ctcttggtca ggggatcaag gggtcacaga cttctgaaca aatcaatgag
     1321 catgtttcag gcccttttgt gcagttcttt gtcaagactg tgggccacta cgcttcctac
     1381 atcaagcggg aagcaaatgg gcaaggccac ttccaagaac gggccttcta taaggctctg
     1441 acctccaagg ccaaccgccg atttgtgaag aagtttgtga agacacagct cttttccctt
     1501 ttcatccagg aagctgagaa gagcaagaac cctcctgcag gctatttcca acagaaaata
     1561 cttgaatacg aggaacggaa gaaacagaag aaaccaaagg aaaagacttt gaaataagag
     1621 ctgtggtgaa cagcagtgac tagacctata ggccatttgt ggactttggc ccctgccagc
     1681 atggtaggat gtgaagctct cagcccccag aatccacagc cttcttccga gtcctggtaa
     1741 ccaggtcttg cttcaagttg gtgtcctgag tttgggatcc ctggaatcag ctttctcaag
     1801 actttggaag gctctgacct ctgtgctcac agagctgggc acaaagctgc ctttcctgca
     1861 gaggtgacac cgggcaggag accgtagtag aggtgttgta gagtcttaca agttgctgta
     1921 actgccctct tccaggaacc tcttacaaaa ccctcaacag agaaagcagt tgtggcccaa
     1981 aggctcagtt tctccacata aaagaagagg tctgtggaca tgtgaggata agaataaaga
     2041 tgaaaatctt cttgt
//
LOCUS       XM_032650563            7554 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus calcium voltage-gated channel subunit
            alpha1 E (CACNA1E), transcript variant X1, mRNA.
ACCESSION   XM_032650563
VERSION     XM_032650563.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7554
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7554
                     /gene="CACNA1E"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 Proteins, and 81%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762976"
     CDS             1..6945
                     /gene="CACNA1E"
                     /codon_start=1
                     /product="voltage-dependent R-type calcium channel subunit
                     alpha-1E isoform X1"
                     /protein_id="XP_032506454.1"
                     /db_xref="GeneID:116762976"
                     /translation="MARFGEAVVGRPGSGDGDSDQSRNRQGTPIPASGPAAAYKQSKA
                     QRARTMALYNPIPVRQNCFTVNRSLFIFGEDNIVRKYAKKLIDWPPFEYMILATIIAN
                     CIVLALEQHLPEDDKTPMSRRLEKTEPYFIGIFCFEAGIKIVALGFIFHKGSYLRNGW
                     NVMDFIVVLSGILATAGTHFNTHVDLRTLRAVRVLRPLKLVSGIPSLQIVLKSIMKAM
                     VPLLQIGLLLFFAILMFAIIGLEFYSGKLHRACFMNNSGILEGFDPPHPCGVQGCPAG
                     YECRDWIGPNDGITQFDNILFAVLTVFQCITMEGWTTVLYNTNDALGATWNWLYFIPL
                     IIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQIERELNGYRAWIDKAEE
                     VMLAEENKNAGTSALEVLRRATIKRSRTEAMTRDSSDAHCVDISSVGTPLARASIKST
                     KVDGASYFRHKERLLRISIRHMVKSQVFYWIVLSLVALNTACVAIVHHNQPQWLTHLL
                     YYAEFLFLGLFLLEMSLKMYGMGPRLYFHSSFNCFDFGVTVGSIFEVVWAIFRPGTSF
                     GISVLRALRLLRIFKITKYWASLRNLVVSLMSSMKSIISLLFLLFLFIVVFALLGMQL
                     FGGRFNFNDGTPSANFDTFPAAIMTVFQILTGEDWNEVMYNGIRSQGGVSSGMWSAIY
                     FIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEQEEEEAFNQKHALQKAKEVSPMSA
                     PNMPSIERDRRRRHHMSMWEPRSSHLRERRRRHHMSVWEQRTSQLRRHMQMPSQEALN
                     KEEAPPMNPLNPLNPLSSLHPLNAHPSLYRRPRPIEGPALGLGLEKCEEERVSRGGSL
                     QGDGGDLSSALDNQRSPVSLGKREPPWLARPCHGNCDPTQQEAGGGETVVAFEDRARH
                     RQSQRRSRHRRVRTEGKESSSASRSRSASQERSLDEAVPGEGERDLEPRDSHGGKEPT
                     IQEEERSQDLRRTNSLMVHRRSGLAGALDEANAPLALPQPELQAEKDAALTEQEPEGS
                     SEQALLGDVQLDMGRVISQSEPDLSCTTANTDKAAPESTSVTVAIPDVGPLVDSTVVH
                     ISSKTDGEASPLKEAEIKEDEEEVEKKQQKKEKRETGKAMVPHSSMFIFSTTNPIRRA
                     CHYIVNLRYFEMCILLVIAASSIALAAEDPVLTNSERNKVLRYFDYVFTGVFTFEMVI
                     KMIDQGLILQDGSYFRDLWNILDFVVVVGALVAFALANALGSNKGRDIKTIKSLRVLR
                     VLRPLKTIKRLPKLKAVFDCVVTSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFYCT
                     DSSKDTEKECIGNYVDHEKNKMEVKGREWKRHEFHYDNIIWALLTLFTVSTGEGWPQV
                     LQHSVDVTEEDRGPSRSNRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMME
                     ECSLEKNERACIDFAISAKPLTRYMPQNRHTFQYRVWHFVVSPSFEYTIMAMIALNTV
                     VLMMKYYSAPCTYELALKYLNIAFTMVFSLECVLKIIAFGFLNYFRDTWNIFDFITVI
                     GSITEIILTDSKLVNTSGFNMSFLKLFRAARLIKLLRQGYTIRILLWTFVQSFKALPY
                     VCLLIAMLFFIYAIIGMQVFGNIKLDEESHINRHNNFRSFFGSLMLLFRSATGEAWQE
                     IMLSCLGEKGCEPDTTAPSGQSESERCGTDLAYVYFVSFIFFCSFLMLNLFVAVIMDN
                     FEYLTRDSSILGPHHLDEFVRVWAEYDRAACGRIHYTEMYEMLTLMSPPLGLGKRCPS
                     KVAYKRLVLMNMPVAEDMTVHFTSTLMALIRTALDIKIAKGGADRQQLDSELQKETLA
                     IWPHLSQKMLDLLVPMPKASDLTVGKIYAAMMIMDYYKQSKVKKQRQQLEEQKNAPMF
                     QRMEPSSLPQEIIANAKALPYLQQDPVSGLGGRSGYPSMSPLSPQEIFQLACMDPADD
                     GQFQEQQSLEPEVSELKSVQPSNHGIYIPSDTQEHAGSGRASSMPRLTVDPQVVTDPS
                     SMRRSFSTIREKRSNSSWLEEFSMERSSENTYKSRRRSYHSSLRLSAHRLNSDSGHKS
                     DTHRSGGRERGRSKERKHLLSPDVSRCNSEERGTQADWESPERHQSRSPSECRSQTPN
                     RPGTGSLSESSIPSVSDTSTPRRSRRQLPPVPPKPRPLLSYSSLMRHTGSISPPADGS
                     EGGSPLTSQALEGNDASLPESCNPRYVQQGHPSSPQRYISEPYLALHEDSHASDCGEE
                     ETLTFEAAVATSLGRSNTIGSAPPLRHSWQMPNGHYRRRRHGGPGPGMTCGAVSDLLS
                     DTEEDDKC"
     misc_feature    262..1086
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    1423..2142
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    3460..4164
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    4432..5205
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    5230..5391
                     /gene="CACNA1E"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; Region: GPHH; pfam16905"
                     /db_xref="CDD:465306"
     misc_feature    5419..5649
                     /gene="CACNA1E"
                     /note="Voltage gated calcium channel IQ domain; Region:
                     Ca_chan_IQ; pfam08763"
                     /db_xref="CDD:462591"
     misc_feature    5935..>6603
                     /gene="CACNA1E"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
ORIGIN      
        1 atggctcgct tcggggaggc ggtggtcggc aggccggggt cgggagatgg agattcggac
       61 cagagcagga accggcaagg aacccccata ccggcctccg ggccggcggc cgcctacaag
      121 cagtcgaaag cgcagagggc gcggactatg gctttgtaca accccattcc cgtccgacag
      181 aactgtttca ccgtcaacag atccctgttc atctttggag aagataacat tgtcaggaaa
      241 tacgccaaga agctcatcga ttggccgccg tttgagtaca tgatcttggc caccatcatt
      301 gccaactgca tcgtcttggc cctggagcag catctccctg aggatgacaa gaccccaatg
      361 tcccgcagac tggagaagac agaaccgtat ttcatcggga tcttttgctt tgaagctggg
      421 atcaaaatcg tagccctggg gttcatcttc cataagggct cgtacctccg caatggctgg
      481 aatgtcatgg acttcattgt ggtcctcagt ggcatcctgg ccactgcggg aacccacttc
      541 aacacacacg tggacctgag gacgctccgg gctgtgcgtg tcctaaggcc cctgaagctc
      601 gtgtcgggga tacctagcct gcagattgtg ctgaagtcca tcatgaaggc catggtgcct
      661 cttctgcaga ttggccttct gctcttcttt gccatcctga tgtttgcgat catcggcttg
      721 gagttctaca gtgggaagtt gcaccgagct tgcttcatga acaattcagg tattctagaa
      781 ggatttgacc cccctcaccc atgtggtgtg cagggctgcc cagctggtta tgaatgccgg
      841 gactggatcg gccccaatga tgggatcacc cagtttgata acatcctttt tgctgtgctg
      901 actgtcttcc agtgcatcac catggaaggg tggaccaccg tgctgtacaa taccaacgat
      961 gccttaggag ccacctggaa ttggctgtac ttcatccccc tgatcatcat tggatccttc
     1021 tttgttctca acctcgtcct gggagtgctt tctggggaat ttgccaaaga gagagagaga
     1081 gtggagaacc ggagagcttt catgaaactg cggcgccagc agcagatcga gcgtgagctg
     1141 aatgggtacc gcgcgtggat agacaaagca gaggaagtca tgctcgctga agaaaataaa
     1201 aatgctggaa cgtcagcctt agaagtgctc cgaagggcaa ctatcaaaag gagccggacg
     1261 gaggccatga cgcgggactc cagtgacgcg cactgtgtcg acatctcctc tgtgggcaca
     1321 cccctcgccc gagccagcat caagagtaca aaggtggatg gggcctccta tttccggcac
     1381 aaggagcggc ttctgcgtat ctctatccgc cacatggtta aatcccaggt gttttattgg
     1441 attgtgctga gccttgtggc tctcaacacc gcctgtgtgg ccatcgtcca tcacaaccag
     1501 ccccagtggc tcacccacct tctctactat gcagaatttt tgtttctggg actcttcctc
     1561 ctggagatgt ccctgaagat gtacggcatg gggcctcgcc tttattttca ctcttcgttc
     1621 aactgctttg attttggggt cacagtgggc agcatctttg aagtggtctg ggcgatcttc
     1681 agacctggta catcttttgg aatcagtgtc ttgcgagctc tccggcttct aagaatattt
     1741 aaaataacca agtattgggc atccctccgg aatttggtgg tctccttgat gagttccatg
     1801 aagtcaatca tcagtttgct cttccttctc ttcctcttca tcgttgtctt tgctctccta
     1861 ggaatgcagc tgtttggagg caggttcaac tttaatgatg ggactccttc agcaaacttt
     1921 gacaccttcc ctgcagccat catgactgta ttccagatcc tgacgggtga ggactggaat
     1981 gaggtgatgt acaatgggat ccgctcccag ggtggggtca gctcaggcat gtggtcagct
     2041 atctatttca ttgtgctcac cttgtttgga aactacacac tgctgaatgt gttcttggcc
     2101 atcgctgtgg acaatctggc caatgcccag gagctgacca aggatgaaca ggaagaagag
     2161 gaggccttca accagaaaca cgcgctgcag aaggccaagg aggtcagccc gatgtctgca
     2221 cccaacatgc cttccatcga aagagacaga aggagaagac accacatgtc gatgtgggag
     2281 ccacgcagca gccacctgag ggagcgaagg cgccgacacc acatgtcggt gtgggagcag
     2341 cgcaccagcc agctgagaag gcacatgcag atgcccagcc aggaggccct caacaaggag
     2401 gaggccccgc ccatgaaccc cctcaacccc ctcaaccccc tgagctccct ccacccactc
     2461 aatgcccacc ccagcctcta ccggagaccc aggcccatcg aggggccggc cctgggcctg
     2521 ggtctggaga agtgtgagga ggagcgcgtc agccgcgggg ggtccctcca gggggacgga
     2581 ggggacctgt cgagtgccct ggacaaccag aggagccctg tgtccctggg caaacgggag
     2641 ccgccctggc tggccaggcc ctgtcatggg aactgtgacc cgacccagca ggaggccggg
     2701 ggcggggaga ccgtggtggc cttcgaggac cgggccaggc acaggcagag ccagcggcgc
     2761 agccggcacc gccgcgtcag gacggagggc aaggagtcct cctccgcttc caggagcagg
     2821 tctgccagcc aggagcggag tctggatgaa gctgtgcccg gtgaggggga gagggacctc
     2881 gagcccaggg acagccacgg gggcaaggag cccacaatcc aggaagaaga gcgatcccag
     2941 gacttaagga ggaccaacag tctgatggtg cacagacgct ccgggctggc aggagccctc
     3001 gacgaggcca acgcacccct cgccctgccc caaccagagc tgcaggcgga gaaggatgca
     3061 gcgctgacgg aacaggagcc ggaggggagc agtgagcaag ccctgctggg ggacgtgcag
     3121 ctggacatgg gccgggtcat cagccagagt gaacccgacc tctcctgcac cacggccaac
     3181 acggacaagg ctgcccccga gagcaccagc gtcaccgtcg ccatccctga cgtgggcccc
     3241 ttggtggact cgaccgtggt gcacatcagc agcaagactg atggagaagc cagtcccttg
     3301 aaagaggcag agatcaaaga ggatgaggag gaagtggaga agaagcagca gaagaaggag
     3361 aagcgtgaga cgggcaaagc catggtgcct cacagctcaa tgttcatctt cagcaccacc
     3421 aaccccatcc gcagggcctg ccactacatc gtgaacctgc gctacttcga gatgtgcatc
     3481 ctcctggtga tcgcagccag cagcatcgcc ctggcggccg aggaccccgt cttgaccaac
     3541 tcggagcgca acaaagtgct gaggtatttt gactatgttt tcactggcgt cttcaccttt
     3601 gagatggtta taaagatgat agaccagggc ttgatcctgc aggatgggtc ctacttccga
     3661 gacctgtgga acatcctcga ctttgtggta gtggttggtg cattggtggc ctttgctctg
     3721 gcgaatgcct tgggaagcaa caagggccgg gacatcaaga ccatcaagtc cctgcgggta
     3781 ctgcgtgtgc tgagaccgct aaagaccatc aagcgcctgc ccaagcttaa ggctgtcttc
     3841 gactgtgtgg tcacctcctt gaaaaatgtc ttcaacatac taattgtcta taagctcttc
     3901 atgttcatct ttgctgtcat cgcagttcaa cttttcaagg gcaagttctt ctattgcaca
     3961 gacagttcca aggacacaga gaaggagtgc ataggaaact atgtagatca cgagaaaaac
     4021 aagatggagg tgaaaggccg agaatggaag cgccatgaat tccactatga caacatcatc
     4081 tgggccctgc tgaccctctt caccgtctcc acaggggaag gatggcctca agttttgcag
     4141 cattctgtcg atgtgacaga ggaagaccga ggcccgagcc gcagcaaccg catggagatg
     4201 tccatctttt atgtggtcta ctttgtggtc tttcctttct tcttcgtcaa catctttgtg
     4261 gctctcatca tcatcacctt ccaggagcaa ggagacaaga tgatggagga gtgcagcctg
     4321 gagaagaatg agagggcgtg cattgacttc gccatcagtg ccaaaccact cacccgctac
     4381 atgccccaga acaggcacac cttccagtac cgcgtctggc acttcgtggt gtctccatcc
     4441 tttgagtaca ccatcatggc catgatcgcc ctgaacactg tcgtgctgat gatgaagtac
     4501 tactctgctc cctgtaccta tgaactggcc ctgaagtacc tgaatatcgc cttcaccatg
     4561 gtgttctccc tggaatgtgt cctaaagatc attgcgtttg gcttcttgaa ctatttccga
     4621 gacacctgga atatctttga cttcatcacg gtgatcggca gtatcacaga aattattctg
     4681 acagacagca agctggtgaa caccagtggc ttcaatatga gctttctgaa gctcttccga
     4741 gccgcccgcc tcatcaagct tctgcgtcaa ggctacacca tccgtatttt actttggacc
     4801 ttcgtgcagt cctttaaggc cctcccctac gtctgccttc tgattgccat gcttttcttc
     4861 atctatgcca tcattgggat gcaggtcttt ggaaacataa aattagatga ggagagtcac
     4921 atcaaccggc acaacaactt ccggagtttc tttgggtccc tcatgctact cttcaggagt
     4981 gccacgggtg aggcctggca ggagataatg ctgtcgtgcc tcggggagaa gggctgtgag
     5041 cctgacacca ccgcaccctc agggcagagc gagagcgagc gctgtggcac cgacctggcc
     5101 tacgtgtact tcgtctcttt catcttcttc tgttccttct tgatgctcaa cctgttcgtg
     5161 gccgtcatca tggacaactt tgagtacctg actcgggatt catccatcct ggggcctcac
     5221 cacctggacg agtttgtccg tgtctgggca gagtatgaca gagcggcatg tggccgcatc
     5281 cattacactg agatgtatga aatgctgact ctcatgtcac caccgctagg cctcggcaag
     5341 agatgtccct ccaaggtggc atataagagg ttagtcctga tgaatatgcc agtggctgag
     5401 gacatgactg tccacttcac atccacgctt atggctctga tccggacagc tctggacatt
     5461 aaaatcgcca aaggtggtgc ggacaggcag cagctagact cagagctaca gaaggagacc
     5521 ctggccatct ggcctcacct gtcccagaag atgttagatc tgcttgtgcc catgcccaaa
     5581 gcctctgacc tgactgtggg caaaatctat gcagcaatga tgatcatgga ctactataaa
     5641 cagagcaagg tgaagaagca gaggcagcag ctggaggaac agaaaaacgc acccatgttc
     5701 cagcggatgg agccatcatc tctgcctcag gagatcattg ctaatgccaa agccctgcct
     5761 tatctccagc aggaccccgt ttcaggcctg ggtggccgga gtggataccc ttcgatgagt
     5821 ccactctccc cgcaggaaat attccagttg gcctgtatgg acccagctga tgatggacaa
     5881 ttccaggaac agcaatctct ggagccagag gttagtgaat taaaaagcgt gcagccctct
     5941 aaccatggca tctacattcc ttcggacacc caggagcatg cgggatctgg gagggcatcc
     6001 tctatgccac gcctgactgt ggatccccag gtggtgacag accctagctc catgagacgt
     6061 tcattttcca ctattcggga aaagcgttca aattcctctt ggctggagga attctccatg
     6121 gagcggagca gcgaaaacac ctacaagtcg cgtcgccgga gttaccactc ctccctgagg
     6181 ctgtcagccc accgcctgaa ctctgactca ggccacaagt ccgacaccca ccgctcaggg
     6241 ggcagagagc ggggacgatc gaaagagcga aagcatcttc tctctcccga tgtctcccgc
     6301 tgcaactccg aggagcgagg gacccaggcc gactgggagt ccccagaacg tcatcagtcc
     6361 cggtctccca gcgagtgcag gtcgcagacc cccaacagac cgggcacagg gtccctcagt
     6421 gagagctcca tcccctccgt ctccgacacc agcaccccaa gacgaagtcg tcggcagctc
     6481 ccacctgtcc ctccaaagcc tcggcccctc ctttcctaca gctccctgat gagacacact
     6541 gggagcatct ccccacccgc tgatgggagc gagggtggct ccccactgac ctcccaagct
     6601 ctggagggca atgacgccag cctgcccgag tcttgcaacc cccggtacgt acagcagggc
     6661 cacccctcct ccccacagcg ctacatctct gagccctacc tggccctgca cgaagactcc
     6721 cacgcctcgg actgtggcga ggaggagacg ctcacctttg aagcagctgt ggcgaccagc
     6781 ctcggccggt ccaacaccat cggctcagcc ccgcccctgc ggcacagctg gcagatgccc
     6841 aacgggcact atcggcggcg gaggcacggg gggcctggac caggcatgac gtgtggagct
     6901 gtcagcgacc ttctgagcga tacggaggaa gacgacaaat gctagaggcc gctcccccct
     6961 ccgatgcatg ctcttctctc aacacggaga aaaccaagac cccaattggg aagccagtgc
     7021 ggcccggggg ggaggaagag ggaggaagaa gatagaagga caccgtgcat tatcagagaa
     7081 gaggaaggaa aagacagaag gaaaaccggt caaacccacc caatcgctgt attccccttg
     7141 gcaagatggg cactgccata gttctgcctc tttgctgggg aaagaatata caagaacatg
     7201 gagggttatt cccaggggag aagggacacg aggatggctt tgcttcccct tgccccttcc
     7261 cacttttcta tagccgtggg gatgtcaggc cggcctgtgg ctgtgcctgt tgccctgaga
     7321 agcctggaag acattctggc tcttaactgg ggagtcatgg agaccctggg agaggactct
     7381 cctccctcac cagcccttcc tcctcagcca gcacccctgc caccaggcca accatgacgg
     7441 catctcatgc gttatcccgt ggcttgcgtc cccagaggag gcacaggctg agttcaggag
     7501 cattggatgt caagggtagg aggcagagag ggaggagaaa ggggaagggg aagg
//
LOCUS       XM_032650564            7425 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus calcium voltage-gated channel subunit
            alpha1 E (CACNA1E), transcript variant X2, mRNA.
ACCESSION   XM_032650564
VERSION     XM_032650564.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7425
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7425
                     /gene="CACNA1E"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 18 Proteins, and 80%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762976"
     CDS             1..6816
                     /gene="CACNA1E"
                     /codon_start=1
                     /product="voltage-dependent R-type calcium channel subunit
                     alpha-1E isoform X2"
                     /protein_id="XP_032506455.1"
                     /db_xref="GeneID:116762976"
                     /translation="MARFGEAVVGRPGSGDGDSDQSRNRQGTPIPASGPAAAYKQSKA
                     QRARTMALYNPIPVRQNCFTVNRSLFIFGEDNIVRKYAKKLIDWPPFEYMILATIIAN
                     CIVLALEQHLPEDDKTPMSRRLEKTEPYFIGIFCFEAGIKIVALGFIFHKGSYLRNGW
                     NVMDFIVVLSGILATAGTHFNTHVDLRTLRAVRVLRPLKLVSGIPSLQIVLKSIMKAM
                     VPLLQIGLLLFFAILMFAIIGLEFYSGKLHRACFMNNSGILEGFDPPHPCGVQGCPAG
                     YECRDWIGPNDGITQFDNILFAVLTVFQCITMEGWTTVLYNTNDALGATWNWLYFIPL
                     IIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQIERELNGYRAWIDKAEE
                     VMLAEENKNAGTSALEVLRRATIKRSRTEAMTRDSSDAHCVDISSVGTPLARASIKST
                     KVDGASYFRHKERLLRISIRHMVKSQVFYWIVLSLVALNTACVAIVHHNQPQWLTHLL
                     YYAEFLFLGLFLLEMSLKMYGMGPRLYFHSSFNCFDFGVTVGSIFEVVWAIFRPGTSF
                     GISVLRALRLLRIFKITKYWASLRNLVVSLMSSMKSIISLLFLLFLFIVVFALLGMQL
                     FGGRFNFNDGTPSANFDTFPAAIMTVFQILTGEDWNEVMYNGIRSQGGVSSGMWSAIY
                     FIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEQEEEEAFNQKHALQKAKEVSPMSA
                     PNMPSIERDRRRRHHMSMWEPRSSHLRERRRRHHMSVWEQRTSQLRRHMQMPSQEALN
                     KEEAPPMNPLNPLNPLSSLHPLNAHPSLYRRPRPIEGPALGLGLEKCEEERVSRGGSL
                     QGDGGDLSSALDNQRSPVSLGKREPPWLARPCHGNCDPTQQEAGGGETVVAFEDRARH
                     RQSQRRSRHRRVRTEGKESSSASRSRSASQERSLDEAVPGEGERDLEPRDSHGGKEPT
                     IQEEERSQDLRRTNSLMVHRRSGLAGALDEANAPLALPQPELQAEKDAALTEQEPEGS
                     SEQALLGDVQLDMGRVISQSEPDLSCTTANTDKAAPESTSVTVAIPDVGPLVDSTVVH
                     ISSKTDGEASPLKEAEIKEDEEEVEKKQQKKEKRETGKAMVPHSSMFIFSTTNPIRRA
                     CHYIVNLRYFEMCILLVIAASSIALAAEDPVLTNSERNKVLRYFDYVFTGVFTFEMVI
                     KMIDQGLILQDGSYFRDLWNILDFVVVVGALVAFALANALGSNKGRDIKTIKSLRVLR
                     VLRPLKTIKRLPKLKAVFDCVVTSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFYCT
                     DSSKDTEKECIGNYVDHEKNKMEVKGREWKRHEFHYDNIIWALLTLFTVSTGEGWPQV
                     LQHSVDVTEEDRGPSRSNRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMME
                     ECSLEKNERACIDFAISAKPLTRYMPQNRHTFQYRVWHFVVSPSFEYTIMAMIALNTV
                     VLMMKYYSAPCTYELALKYLNIAFTMVFSLECVLKIIAFGFLNYFRDTWNIFDFITVI
                     GSITEIILTDSKLVNTSGFNMSFLKLFRAARLIKLLRQGYTIRILLWTFVQSFKALPY
                     VCLLIAMLFFIYAIIGMQVFGNIKLDEESHINRHNNFRSFFGSLMLLFRSATGEAWQE
                     IMLSCLGEKGCEPDTTAPSGQSESERCGTDLAYVYFVSFIFFCSFLMLNLFVAVIMDN
                     FEYLTRDSSILGPHHLDEFVRVWAEYDRAACGRIHYTEMYEMLTLMSPPLGLGKRCPS
                     KVAYKRLVLMNMPVAEDMTVHFTSTLMALIRTALDIKIAKGGADRQQLDSELQKETLA
                     IWPHLSQKMLDLLVPMPKASDLTVGKIYAAMMIMDYYKQSKVKKQRQQLEEQKNAPMF
                     QRMEPSSLPQEIIANAKALPYLQQDPVSGLGGRSGYPSMSPLSPQEIFQLACMDPADD
                     GQFQEQQSLVVTDPSSMRRSFSTIREKRSNSSWLEEFSMERSSENTYKSRRRSYHSSL
                     RLSAHRLNSDSGHKSDTHRSGGRERGRSKERKHLLSPDVSRCNSEERGTQADWESPER
                     HQSRSPSECRSQTPNRPGTGSLSESSIPSVSDTSTPRRSRRQLPPVPPKPRPLLSYSS
                     LMRHTGSISPPADGSEGGSPLTSQALEGNDASLPESCNPRYVQQGHPSSPQRYISEPY
                     LALHEDSHASDCGEEETLTFEAAVATSLGRSNTIGSAPPLRHSWQMPNGHYRRRRHGG
                     PGPGMTCGAVSDLLSDTEEDDKC"
     misc_feature    262..1086
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    1423..2142
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    3460..4164
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    4432..5205
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    5230..5391
                     /gene="CACNA1E"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; Region: GPHH; pfam16905"
                     /db_xref="CDD:465306"
     misc_feature    5419..5649
                     /gene="CACNA1E"
                     /note="Voltage gated calcium channel IQ domain; Region:
                     Ca_chan_IQ; pfam08763"
                     /db_xref="CDD:462591"
ORIGIN      
        1 atggctcgct tcggggaggc ggtggtcggc aggccggggt cgggagatgg agattcggac
       61 cagagcagga accggcaagg aacccccata ccggcctccg ggccggcggc cgcctacaag
      121 cagtcgaaag cgcagagggc gcggactatg gctttgtaca accccattcc cgtccgacag
      181 aactgtttca ccgtcaacag atccctgttc atctttggag aagataacat tgtcaggaaa
      241 tacgccaaga agctcatcga ttggccgccg tttgagtaca tgatcttggc caccatcatt
      301 gccaactgca tcgtcttggc cctggagcag catctccctg aggatgacaa gaccccaatg
      361 tcccgcagac tggagaagac agaaccgtat ttcatcggga tcttttgctt tgaagctggg
      421 atcaaaatcg tagccctggg gttcatcttc cataagggct cgtacctccg caatggctgg
      481 aatgtcatgg acttcattgt ggtcctcagt ggcatcctgg ccactgcggg aacccacttc
      541 aacacacacg tggacctgag gacgctccgg gctgtgcgtg tcctaaggcc cctgaagctc
      601 gtgtcgggga tacctagcct gcagattgtg ctgaagtcca tcatgaaggc catggtgcct
      661 cttctgcaga ttggccttct gctcttcttt gccatcctga tgtttgcgat catcggcttg
      721 gagttctaca gtgggaagtt gcaccgagct tgcttcatga acaattcagg tattctagaa
      781 ggatttgacc cccctcaccc atgtggtgtg cagggctgcc cagctggtta tgaatgccgg
      841 gactggatcg gccccaatga tgggatcacc cagtttgata acatcctttt tgctgtgctg
      901 actgtcttcc agtgcatcac catggaaggg tggaccaccg tgctgtacaa taccaacgat
      961 gccttaggag ccacctggaa ttggctgtac ttcatccccc tgatcatcat tggatccttc
     1021 tttgttctca acctcgtcct gggagtgctt tctggggaat ttgccaaaga gagagagaga
     1081 gtggagaacc ggagagcttt catgaaactg cggcgccagc agcagatcga gcgtgagctg
     1141 aatgggtacc gcgcgtggat agacaaagca gaggaagtca tgctcgctga agaaaataaa
     1201 aatgctggaa cgtcagcctt agaagtgctc cgaagggcaa ctatcaaaag gagccggacg
     1261 gaggccatga cgcgggactc cagtgacgcg cactgtgtcg acatctcctc tgtgggcaca
     1321 cccctcgccc gagccagcat caagagtaca aaggtggatg gggcctccta tttccggcac
     1381 aaggagcggc ttctgcgtat ctctatccgc cacatggtta aatcccaggt gttttattgg
     1441 attgtgctga gccttgtggc tctcaacacc gcctgtgtgg ccatcgtcca tcacaaccag
     1501 ccccagtggc tcacccacct tctctactat gcagaatttt tgtttctggg actcttcctc
     1561 ctggagatgt ccctgaagat gtacggcatg gggcctcgcc tttattttca ctcttcgttc
     1621 aactgctttg attttggggt cacagtgggc agcatctttg aagtggtctg ggcgatcttc
     1681 agacctggta catcttttgg aatcagtgtc ttgcgagctc tccggcttct aagaatattt
     1741 aaaataacca agtattgggc atccctccgg aatttggtgg tctccttgat gagttccatg
     1801 aagtcaatca tcagtttgct cttccttctc ttcctcttca tcgttgtctt tgctctccta
     1861 ggaatgcagc tgtttggagg caggttcaac tttaatgatg ggactccttc agcaaacttt
     1921 gacaccttcc ctgcagccat catgactgta ttccagatcc tgacgggtga ggactggaat
     1981 gaggtgatgt acaatgggat ccgctcccag ggtggggtca gctcaggcat gtggtcagct
     2041 atctatttca ttgtgctcac cttgtttgga aactacacac tgctgaatgt gttcttggcc
     2101 atcgctgtgg acaatctggc caatgcccag gagctgacca aggatgaaca ggaagaagag
     2161 gaggccttca accagaaaca cgcgctgcag aaggccaagg aggtcagccc gatgtctgca
     2221 cccaacatgc cttccatcga aagagacaga aggagaagac accacatgtc gatgtgggag
     2281 ccacgcagca gccacctgag ggagcgaagg cgccgacacc acatgtcggt gtgggagcag
     2341 cgcaccagcc agctgagaag gcacatgcag atgcccagcc aggaggccct caacaaggag
     2401 gaggccccgc ccatgaaccc cctcaacccc ctcaaccccc tgagctccct ccacccactc
     2461 aatgcccacc ccagcctcta ccggagaccc aggcccatcg aggggccggc cctgggcctg
     2521 ggtctggaga agtgtgagga ggagcgcgtc agccgcgggg ggtccctcca gggggacgga
     2581 ggggacctgt cgagtgccct ggacaaccag aggagccctg tgtccctggg caaacgggag
     2641 ccgccctggc tggccaggcc ctgtcatggg aactgtgacc cgacccagca ggaggccggg
     2701 ggcggggaga ccgtggtggc cttcgaggac cgggccaggc acaggcagag ccagcggcgc
     2761 agccggcacc gccgcgtcag gacggagggc aaggagtcct cctccgcttc caggagcagg
     2821 tctgccagcc aggagcggag tctggatgaa gctgtgcccg gtgaggggga gagggacctc
     2881 gagcccaggg acagccacgg gggcaaggag cccacaatcc aggaagaaga gcgatcccag
     2941 gacttaagga ggaccaacag tctgatggtg cacagacgct ccgggctggc aggagccctc
     3001 gacgaggcca acgcacccct cgccctgccc caaccagagc tgcaggcgga gaaggatgca
     3061 gcgctgacgg aacaggagcc ggaggggagc agtgagcaag ccctgctggg ggacgtgcag
     3121 ctggacatgg gccgggtcat cagccagagt gaacccgacc tctcctgcac cacggccaac
     3181 acggacaagg ctgcccccga gagcaccagc gtcaccgtcg ccatccctga cgtgggcccc
     3241 ttggtggact cgaccgtggt gcacatcagc agcaagactg atggagaagc cagtcccttg
     3301 aaagaggcag agatcaaaga ggatgaggag gaagtggaga agaagcagca gaagaaggag
     3361 aagcgtgaga cgggcaaagc catggtgcct cacagctcaa tgttcatctt cagcaccacc
     3421 aaccccatcc gcagggcctg ccactacatc gtgaacctgc gctacttcga gatgtgcatc
     3481 ctcctggtga tcgcagccag cagcatcgcc ctggcggccg aggaccccgt cttgaccaac
     3541 tcggagcgca acaaagtgct gaggtatttt gactatgttt tcactggcgt cttcaccttt
     3601 gagatggtta taaagatgat agaccagggc ttgatcctgc aggatgggtc ctacttccga
     3661 gacctgtgga acatcctcga ctttgtggta gtggttggtg cattggtggc ctttgctctg
     3721 gcgaatgcct tgggaagcaa caagggccgg gacatcaaga ccatcaagtc cctgcgggta
     3781 ctgcgtgtgc tgagaccgct aaagaccatc aagcgcctgc ccaagcttaa ggctgtcttc
     3841 gactgtgtgg tcacctcctt gaaaaatgtc ttcaacatac taattgtcta taagctcttc
     3901 atgttcatct ttgctgtcat cgcagttcaa cttttcaagg gcaagttctt ctattgcaca
     3961 gacagttcca aggacacaga gaaggagtgc ataggaaact atgtagatca cgagaaaaac
     4021 aagatggagg tgaaaggccg agaatggaag cgccatgaat tccactatga caacatcatc
     4081 tgggccctgc tgaccctctt caccgtctcc acaggggaag gatggcctca agttttgcag
     4141 cattctgtcg atgtgacaga ggaagaccga ggcccgagcc gcagcaaccg catggagatg
     4201 tccatctttt atgtggtcta ctttgtggtc tttcctttct tcttcgtcaa catctttgtg
     4261 gctctcatca tcatcacctt ccaggagcaa ggagacaaga tgatggagga gtgcagcctg
     4321 gagaagaatg agagggcgtg cattgacttc gccatcagtg ccaaaccact cacccgctac
     4381 atgccccaga acaggcacac cttccagtac cgcgtctggc acttcgtggt gtctccatcc
     4441 tttgagtaca ccatcatggc catgatcgcc ctgaacactg tcgtgctgat gatgaagtac
     4501 tactctgctc cctgtaccta tgaactggcc ctgaagtacc tgaatatcgc cttcaccatg
     4561 gtgttctccc tggaatgtgt cctaaagatc attgcgtttg gcttcttgaa ctatttccga
     4621 gacacctgga atatctttga cttcatcacg gtgatcggca gtatcacaga aattattctg
     4681 acagacagca agctggtgaa caccagtggc ttcaatatga gctttctgaa gctcttccga
     4741 gccgcccgcc tcatcaagct tctgcgtcaa ggctacacca tccgtatttt actttggacc
     4801 ttcgtgcagt cctttaaggc cctcccctac gtctgccttc tgattgccat gcttttcttc
     4861 atctatgcca tcattgggat gcaggtcttt ggaaacataa aattagatga ggagagtcac
     4921 atcaaccggc acaacaactt ccggagtttc tttgggtccc tcatgctact cttcaggagt
     4981 gccacgggtg aggcctggca ggagataatg ctgtcgtgcc tcggggagaa gggctgtgag
     5041 cctgacacca ccgcaccctc agggcagagc gagagcgagc gctgtggcac cgacctggcc
     5101 tacgtgtact tcgtctcttt catcttcttc tgttccttct tgatgctcaa cctgttcgtg
     5161 gccgtcatca tggacaactt tgagtacctg actcgggatt catccatcct ggggcctcac
     5221 cacctggacg agtttgtccg tgtctgggca gagtatgaca gagcggcatg tggccgcatc
     5281 cattacactg agatgtatga aatgctgact ctcatgtcac caccgctagg cctcggcaag
     5341 agatgtccct ccaaggtggc atataagagg ttagtcctga tgaatatgcc agtggctgag
     5401 gacatgactg tccacttcac atccacgctt atggctctga tccggacagc tctggacatt
     5461 aaaatcgcca aaggtggtgc ggacaggcag cagctagact cagagctaca gaaggagacc
     5521 ctggccatct ggcctcacct gtcccagaag atgttagatc tgcttgtgcc catgcccaaa
     5581 gcctctgacc tgactgtggg caaaatctat gcagcaatga tgatcatgga ctactataaa
     5641 cagagcaagg tgaagaagca gaggcagcag ctggaggaac agaaaaacgc acccatgttc
     5701 cagcggatgg agccatcatc tctgcctcag gagatcattg ctaatgccaa agccctgcct
     5761 tatctccagc aggaccccgt ttcaggcctg ggtggccgga gtggataccc ttcgatgagt
     5821 ccactctccc cgcaggaaat attccagttg gcctgtatgg acccagctga tgatggacaa
     5881 ttccaggaac agcaatctct ggtggtgaca gaccctagct ccatgagacg ttcattttcc
     5941 actattcggg aaaagcgttc aaattcctct tggctggagg aattctccat ggagcggagc
     6001 agcgaaaaca cctacaagtc gcgtcgccgg agttaccact cctccctgag gctgtcagcc
     6061 caccgcctga actctgactc aggccacaag tccgacaccc accgctcagg gggcagagag
     6121 cggggacgat cgaaagagcg aaagcatctt ctctctcccg atgtctcccg ctgcaactcc
     6181 gaggagcgag ggacccaggc cgactgggag tccccagaac gtcatcagtc ccggtctccc
     6241 agcgagtgca ggtcgcagac ccccaacaga ccgggcacag ggtccctcag tgagagctcc
     6301 atcccctccg tctccgacac cagcacccca agacgaagtc gtcggcagct cccacctgtc
     6361 cctccaaagc ctcggcccct cctttcctac agctccctga tgagacacac tgggagcatc
     6421 tccccacccg ctgatgggag cgagggtggc tccccactga cctcccaagc tctggagggc
     6481 aatgacgcca gcctgcccga gtcttgcaac ccccggtacg tacagcaggg ccacccctcc
     6541 tccccacagc gctacatctc tgagccctac ctggccctgc acgaagactc ccacgcctcg
     6601 gactgtggcg aggaggagac gctcaccttt gaagcagctg tggcgaccag cctcggccgg
     6661 tccaacacca tcggctcagc cccgcccctg cggcacagct ggcagatgcc caacgggcac
     6721 tatcggcggc ggaggcacgg ggggcctgga ccaggcatga cgtgtggagc tgtcagcgac
     6781 cttctgagcg atacggagga agacgacaaa tgctagaggc cgctcccccc tccgatgcat
     6841 gctcttctct caacacggag aaaaccaaga ccccaattgg gaagccagtg cggcccgggg
     6901 gggaggaaga gggaggaaga agatagaagg acaccgtgca ttatcagaga agaggaagga
     6961 aaagacagaa ggaaaaccgg tcaaacccac ccaatcgctg tattcccctt ggcaagatgg
     7021 gcactgccat agttctgcct ctttgctggg gaaagaatat acaagaacat ggagggttat
     7081 tcccagggga gaagggacac gaggatggct ttgcttcccc ttgccccttc ccacttttct
     7141 atagccgtgg ggatgtcagg ccggcctgtg gctgtgcctg ttgccctgag aagcctggaa
     7201 gacattctgg ctcttaactg gggagtcatg gagaccctgg gagaggactc tcctccctca
     7261 ccagcccttc ctcctcagcc agcacccctg ccaccaggcc aaccatgacg gcatctcatg
     7321 cgttatcccg tggcttgcgt ccccagagga ggcacaggct gagttcagga gcattggatg
     7381 tcaagggtag gaggcagaga gggaggagaa aggggaaggg gaagg
//
LOCUS       XM_032650565            7368 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus calcium voltage-gated channel subunit
            alpha1 E (CACNA1E), transcript variant X3, mRNA.
ACCESSION   XM_032650565
VERSION     XM_032650565.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7368
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7368
                     /gene="CACNA1E"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 Proteins, and 80%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116762976"
     CDS             1..6759
                     /gene="CACNA1E"
                     /codon_start=1
                     /product="voltage-dependent R-type calcium channel subunit
                     alpha-1E isoform X3"
                     /protein_id="XP_032506456.1"
                     /db_xref="GeneID:116762976"
                     /translation="MARFGEAVVGRPGSGDGDSDQSRNRQGTPIPASGPAAAYKQSKA
                     QRARTMALYNPIPVRQNCFTVNRSLFIFGEDNIVRKYAKKLIDWPPFEYMILATIIAN
                     CIVLALEQHLPEDDKTPMSRRLEKTEPYFIGIFCFEAGIKIVALGFIFHKGSYLRNGW
                     NVMDFIVVLSGILATAGTHFNTHVDLRTLRAVRVLRPLKLVSGIPSLQIVLKSIMKAM
                     VPLLQIGLLLFFAILMFAIIGLEFYSGKLHRACFMNNSGILEGFDPPHPCGVQGCPAG
                     YECRDWIGPNDGITQFDNILFAVLTVFQCITMEGWTTVLYNTNDALGATWNWLYFIPL
                     IIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQIERELNGYRAWIDKAEE
                     VMLAEENKNAGTSALEVLRRATIKRSRTEAMTRDSSDAHCVDISSVGTPLARASIKST
                     KVDGASYFRHKERLLRISIRHMVKSQVFYWIVLSLVALNTACVAIVHHNQPQWLTHLL
                     YYAEFLFLGLFLLEMSLKMYGMGPRLYFHSSFNCFDFGVTVGSIFEVVWAIFRPGTSF
                     GISVLRALRLLRIFKITKYWASLRNLVVSLMSSMKSIISLLFLLFLFIVVFALLGMQL
                     FGGRFNFNDGTPSANFDTFPAAIMTVFQILTGEDWNEVMYNGIRSQGGVSSGMWSAIY
                     FIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEQEEEEAFNQKHALQKAKEVSPMSA
                     PNMPSIERERRRRHHMSVWEQRTSQLRRHMQMPSQEALNKEEAPPMNPLNPLNPLSSL
                     HPLNAHPSLYRRPRPIEGPALGLGLEKCEEERVSRGGSLQGDGGDLSSALDNQRSPVS
                     LGKREPPWLARPCHGNCDPTQQEAGGGETVVAFEDRARHRQSQRRSRHRRVRTEGKES
                     SSASRSRSASQERSLDEAVPGEGERDLEPRDSHGGKEPTIQEEERSQDLRRTNSLMVH
                     RRSGLAGALDEANAPLALPQPELQAEKDAALTEQEPEGSSEQALLGDVQLDMGRVISQ
                     SEPDLSCTTANTDKAAPESTSVTVAIPDVGPLVDSTVVHISSKTDGEASPLKEAEIKE
                     DEEEVEKKQQKKEKRETGKAMVPHSSMFIFSTTNPIRRACHYIVNLRYFEMCILLVIA
                     ASSIALAAEDPVLTNSERNKVLRYFDYVFTGVFTFEMVIKMIDQGLILQDGSYFRDLW
                     NILDFVVVVGALVAFALANALGSNKGRDIKTIKSLRVLRVLRPLKTIKRLPKLKAVFD
                     CVVTSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFYCTDSSKDTEKECIGNYVDHEK
                     NKMEVKGREWKRHEFHYDNIIWALLTLFTVSTGEGWPQVLQHSVDVTEEDRGPSRSNR
                     MEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKNERACIDFAISAK
                     PLTRYMPQNRHTFQYRVWHFVVSPSFEYTIMAMIALNTVVLMMKYYSAPCTYELALKY
                     LNIAFTMVFSLECVLKIIAFGFLNYFRDTWNIFDFITVIGSITEIILTDSKLVNTSGF
                     NMSFLKLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQV
                     FGNIKLDEESHINRHNNFRSFFGSLMLLFRSATGEAWQEIMLSCLGEKGCEPDTTAPS
                     GQSESERCGTDLAYVYFVSFIFFCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEF
                     VRVWAEYDRAACGRIHYTEMYEMLTLMSPPLGLGKRCPSKVAYKRLVLMNMPVAEDMT
                     VHFTSTLMALIRTALDIKIAKGGADRQQLDSELQKETLAIWPHLSQKMLDLLVPMPKA
                     SDLTVGKIYAAMMIMDYYKQSKVKKQRQQLEEQKNAPMFQRMEPSSLPQEIIANAKAL
                     PYLQQDPVSGLGGRSGYPSMSPLSPQEIFQLACMDPADDGQFQEQQSLVVTDPSSMRR
                     SFSTIREKRSNSSWLEEFSMERSSENTYKSRRRSYHSSLRLSAHRLNSDSGHKSDTHR
                     SGGRERGRSKERKHLLSPDVSRCNSEERGTQADWESPERHQSRSPSECRSQTPNRPGT
                     GSLSESSIPSVSDTSTPRRSRRQLPPVPPKPRPLLSYSSLMRHTGSISPPADGSEGGS
                     PLTSQALEGNDASLPESCNPRYVQQGHPSSPQRYISEPYLALHEDSHASDCGEEETLT
                     FEAAVATSLGRSNTIGSAPPLRHSWQMPNGHYRRRRHGGPGPGMTCGAVSDLLSDTEE
                     DDKC"
     misc_feature    262..1086
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    1423..2142
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    3403..4107
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    4375..5148
                     /gene="CACNA1E"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    5173..5334
                     /gene="CACNA1E"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; Region: GPHH; pfam16905"
                     /db_xref="CDD:465306"
     misc_feature    5362..5592
                     /gene="CACNA1E"
                     /note="Voltage gated calcium channel IQ domain; Region:
                     Ca_chan_IQ; pfam08763"
                     /db_xref="CDD:462591"
ORIGIN      
        1 atggctcgct tcggggaggc ggtggtcggc aggccggggt cgggagatgg agattcggac
       61 cagagcagga accggcaagg aacccccata ccggcctccg ggccggcggc cgcctacaag
      121 cagtcgaaag cgcagagggc gcggactatg gctttgtaca accccattcc cgtccgacag
      181 aactgtttca ccgtcaacag atccctgttc atctttggag aagataacat tgtcaggaaa
      241 tacgccaaga agctcatcga ttggccgccg tttgagtaca tgatcttggc caccatcatt
      301 gccaactgca tcgtcttggc cctggagcag catctccctg aggatgacaa gaccccaatg
      361 tcccgcagac tggagaagac agaaccgtat ttcatcggga tcttttgctt tgaagctggg
      421 atcaaaatcg tagccctggg gttcatcttc cataagggct cgtacctccg caatggctgg
      481 aatgtcatgg acttcattgt ggtcctcagt ggcatcctgg ccactgcggg aacccacttc
      541 aacacacacg tggacctgag gacgctccgg gctgtgcgtg tcctaaggcc cctgaagctc
      601 gtgtcgggga tacctagcct gcagattgtg ctgaagtcca tcatgaaggc catggtgcct
      661 cttctgcaga ttggccttct gctcttcttt gccatcctga tgtttgcgat catcggcttg
      721 gagttctaca gtgggaagtt gcaccgagct tgcttcatga acaattcagg tattctagaa
      781 ggatttgacc cccctcaccc atgtggtgtg cagggctgcc cagctggtta tgaatgccgg
      841 gactggatcg gccccaatga tgggatcacc cagtttgata acatcctttt tgctgtgctg
      901 actgtcttcc agtgcatcac catggaaggg tggaccaccg tgctgtacaa taccaacgat
      961 gccttaggag ccacctggaa ttggctgtac ttcatccccc tgatcatcat tggatccttc
     1021 tttgttctca acctcgtcct gggagtgctt tctggggaat ttgccaaaga gagagagaga
     1081 gtggagaacc ggagagcttt catgaaactg cggcgccagc agcagatcga gcgtgagctg
     1141 aatgggtacc gcgcgtggat agacaaagca gaggaagtca tgctcgctga agaaaataaa
     1201 aatgctggaa cgtcagcctt agaagtgctc cgaagggcaa ctatcaaaag gagccggacg
     1261 gaggccatga cgcgggactc cagtgacgcg cactgtgtcg acatctcctc tgtgggcaca
     1321 cccctcgccc gagccagcat caagagtaca aaggtggatg gggcctccta tttccggcac
     1381 aaggagcggc ttctgcgtat ctctatccgc cacatggtta aatcccaggt gttttattgg
     1441 attgtgctga gccttgtggc tctcaacacc gcctgtgtgg ccatcgtcca tcacaaccag
     1501 ccccagtggc tcacccacct tctctactat gcagaatttt tgtttctggg actcttcctc
     1561 ctggagatgt ccctgaagat gtacggcatg gggcctcgcc tttattttca ctcttcgttc
     1621 aactgctttg attttggggt cacagtgggc agcatctttg aagtggtctg ggcgatcttc
     1681 agacctggta catcttttgg aatcagtgtc ttgcgagctc tccggcttct aagaatattt
     1741 aaaataacca agtattgggc atccctccgg aatttggtgg tctccttgat gagttccatg
     1801 aagtcaatca tcagtttgct cttccttctc ttcctcttca tcgttgtctt tgctctccta
     1861 ggaatgcagc tgtttggagg caggttcaac tttaatgatg ggactccttc agcaaacttt
     1921 gacaccttcc ctgcagccat catgactgta ttccagatcc tgacgggtga ggactggaat
     1981 gaggtgatgt acaatgggat ccgctcccag ggtggggtca gctcaggcat gtggtcagct
     2041 atctatttca ttgtgctcac cttgtttgga aactacacac tgctgaatgt gttcttggcc
     2101 atcgctgtgg acaatctggc caatgcccag gagctgacca aggatgaaca ggaagaagag
     2161 gaggccttca accagaaaca cgcgctgcag aaggccaagg aggtcagccc gatgtctgca
     2221 cccaacatgc cttccatcga gagggagcga aggcgccgac accacatgtc ggtgtgggag
     2281 cagcgcacca gccagctgag aaggcacatg cagatgccca gccaggaggc cctcaacaag
     2341 gaggaggccc cgcccatgaa ccccctcaac cccctcaacc ccctgagctc cctccaccca
     2401 ctcaatgccc accccagcct ctaccggaga cccaggccca tcgaggggcc ggccctgggc
     2461 ctgggtctgg agaagtgtga ggaggagcgc gtcagccgcg gggggtccct ccagggggac
     2521 ggaggggacc tgtcgagtgc cctggacaac cagaggagcc ctgtgtccct gggcaaacgg
     2581 gagccgccct ggctggccag gccctgtcat gggaactgtg acccgaccca gcaggaggcc
     2641 gggggcgggg agaccgtggt ggccttcgag gaccgggcca ggcacaggca gagccagcgg
     2701 cgcagccggc accgccgcgt caggacggag ggcaaggagt cctcctccgc ttccaggagc
     2761 aggtctgcca gccaggagcg gagtctggat gaagctgtgc ccggtgaggg ggagagggac
     2821 ctcgagccca gggacagcca cgggggcaag gagcccacaa tccaggaaga agagcgatcc
     2881 caggacttaa ggaggaccaa cagtctgatg gtgcacagac gctccgggct ggcaggagcc
     2941 ctcgacgagg ccaacgcacc cctcgccctg ccccaaccag agctgcaggc ggagaaggat
     3001 gcagcgctga cggaacagga gccggagggg agcagtgagc aagccctgct gggggacgtg
     3061 cagctggaca tgggccgggt catcagccag agtgaacccg acctctcctg caccacggcc
     3121 aacacggaca aggctgcccc cgagagcacc agcgtcaccg tcgccatccc tgacgtgggc
     3181 cccttggtgg actcgaccgt ggtgcacatc agcagcaaga ctgatggaga agccagtccc
     3241 ttgaaagagg cagagatcaa agaggatgag gaggaagtgg agaagaagca gcagaagaag
     3301 gagaagcgtg agacgggcaa agccatggtg cctcacagct caatgttcat cttcagcacc
     3361 accaacccca tccgcagggc ctgccactac atcgtgaacc tgcgctactt cgagatgtgc
     3421 atcctcctgg tgatcgcagc cagcagcatc gccctggcgg ccgaggaccc cgtcttgacc
     3481 aactcggagc gcaacaaagt gctgaggtat tttgactatg ttttcactgg cgtcttcacc
     3541 tttgagatgg ttataaagat gatagaccag ggcttgatcc tgcaggatgg gtcctacttc
     3601 cgagacctgt ggaacatcct cgactttgtg gtagtggttg gtgcattggt ggcctttgct
     3661 ctggcgaatg ccttgggaag caacaagggc cgggacatca agaccatcaa gtccctgcgg
     3721 gtactgcgtg tgctgagacc gctaaagacc atcaagcgcc tgcccaagct taaggctgtc
     3781 ttcgactgtg tggtcacctc cttgaaaaat gtcttcaaca tactaattgt ctataagctc
     3841 ttcatgttca tctttgctgt catcgcagtt caacttttca agggcaagtt cttctattgc
     3901 acagacagtt ccaaggacac agagaaggag tgcataggaa actatgtaga tcacgagaaa
     3961 aacaagatgg aggtgaaagg ccgagaatgg aagcgccatg aattccacta tgacaacatc
     4021 atctgggccc tgctgaccct cttcaccgtc tccacagggg aaggatggcc tcaagttttg
     4081 cagcattctg tcgatgtgac agaggaagac cgaggcccga gccgcagcaa ccgcatggag
     4141 atgtccatct tttatgtggt ctactttgtg gtctttcctt tcttcttcgt caacatcttt
     4201 gtggctctca tcatcatcac cttccaggag caaggagaca agatgatgga ggagtgcagc
     4261 ctggagaaga atgagagggc gtgcattgac ttcgccatca gtgccaaacc actcacccgc
     4321 tacatgcccc agaacaggca caccttccag taccgcgtct ggcacttcgt ggtgtctcca
     4381 tcctttgagt acaccatcat ggccatgatc gccctgaaca ctgtcgtgct gatgatgaag
     4441 tactactctg ctccctgtac ctatgaactg gccctgaagt acctgaatat cgccttcacc
     4501 atggtgttct ccctggaatg tgtcctaaag atcattgcgt ttggcttctt gaactatttc
     4561 cgagacacct ggaatatctt tgacttcatc acggtgatcg gcagtatcac agaaattatt
     4621 ctgacagaca gcaagctggt gaacaccagt ggcttcaata tgagctttct gaagctcttc
     4681 cgagccgccc gcctcatcaa gcttctgcgt caaggctaca ccatccgtat tttactttgg
     4741 accttcgtgc agtcctttaa ggccctcccc tacgtctgcc ttctgattgc catgcttttc
     4801 ttcatctatg ccatcattgg gatgcaggtc tttggaaaca taaaattaga tgaggagagt
     4861 cacatcaacc ggcacaacaa cttccggagt ttctttgggt ccctcatgct actcttcagg
     4921 agtgccacgg gtgaggcctg gcaggagata atgctgtcgt gcctcgggga gaagggctgt
     4981 gagcctgaca ccaccgcacc ctcagggcag agcgagagcg agcgctgtgg caccgacctg
     5041 gcctacgtgt acttcgtctc tttcatcttc ttctgttcct tcttgatgct caacctgttc
     5101 gtggccgtca tcatggacaa ctttgagtac ctgactcggg attcatccat cctggggcct
     5161 caccacctgg acgagtttgt ccgtgtctgg gcagagtatg acagagcggc atgtggccgc
     5221 atccattaca ctgagatgta tgaaatgctg actctcatgt caccaccgct aggcctcggc
     5281 aagagatgtc cctccaaggt ggcatataag aggttagtcc tgatgaatat gccagtggct
     5341 gaggacatga ctgtccactt cacatccacg cttatggctc tgatccggac agctctggac
     5401 attaaaatcg ccaaaggtgg tgcggacagg cagcagctag actcagagct acagaaggag
     5461 accctggcca tctggcctca cctgtcccag aagatgttag atctgcttgt gcccatgccc
     5521 aaagcctctg acctgactgt gggcaaaatc tatgcagcaa tgatgatcat ggactactat
     5581 aaacagagca aggtgaagaa gcagaggcag cagctggagg aacagaaaaa cgcacccatg
     5641 ttccagcgga tggagccatc atctctgcct caggagatca ttgctaatgc caaagccctg
     5701 ccttatctcc agcaggaccc cgtttcaggc ctgggtggcc ggagtggata cccttcgatg
     5761 agtccactct ccccgcagga aatattccag ttggcctgta tggacccagc tgatgatgga
     5821 caattccagg aacagcaatc tctggtggtg acagacccta gctccatgag acgttcattt
     5881 tccactattc gggaaaagcg ttcaaattcc tcttggctgg aggaattctc catggagcgg
     5941 agcagcgaaa acacctacaa gtcgcgtcgc cggagttacc actcctccct gaggctgtca
     6001 gcccaccgcc tgaactctga ctcaggccac aagtccgaca cccaccgctc agggggcaga
     6061 gagcggggac gatcgaaaga gcgaaagcat cttctctctc ccgatgtctc ccgctgcaac
     6121 tccgaggagc gagggaccca ggccgactgg gagtccccag aacgtcatca gtcccggtct
     6181 cccagcgagt gcaggtcgca gacccccaac agaccgggca cagggtccct cagtgagagc
     6241 tccatcccct ccgtctccga caccagcacc ccaagacgaa gtcgtcggca gctcccacct
     6301 gtccctccaa agcctcggcc cctcctttcc tacagctccc tgatgagaca cactgggagc
     6361 atctccccac ccgctgatgg gagcgagggt ggctccccac tgacctccca agctctggag
     6421 ggcaatgacg ccagcctgcc cgagtcttgc aacccccggt acgtacagca gggccacccc
     6481 tcctccccac agcgctacat ctctgagccc tacctggccc tgcacgaaga ctcccacgcc
     6541 tcggactgtg gcgaggagga gacgctcacc tttgaagcag ctgtggcgac cagcctcggc
     6601 cggtccaaca ccatcggctc agccccgccc ctgcggcaca gctggcagat gcccaacggg
     6661 cactatcggc ggcggaggca cggggggcct ggaccaggca tgacgtgtgg agctgtcagc
     6721 gaccttctga gcgatacgga ggaagacgac aaatgctaga ggccgctccc ccctccgatg
     6781 catgctcttc tctcaacacg gagaaaacca agaccccaat tgggaagcca gtgcggcccg
     6841 ggggggagga agagggagga agaagataga aggacaccgt gcattatcag agaagaggaa
     6901 ggaaaagaca gaaggaaaac cggtcaaacc cacccaatcg ctgtattccc cttggcaaga
     6961 tgggcactgc catagttctg cctctttgct ggggaaagaa tatacaagaa catggagggt
     7021 tattcccagg ggagaaggga cacgaggatg gctttgcttc cccttgcccc ttcccacttt
     7081 tctatagccg tggggatgtc aggccggcct gtggctgtgc ctgttgccct gagaagcctg
     7141 gaagacattc tggctcttaa ctggggagtc atggagaccc tgggagagga ctctcctccc
     7201 tcaccagccc ttcctcctca gccagcaccc ctgccaccag gccaaccatg acggcatctc
     7261 atgcgttatc ccgtggcttg cgtccccaga ggaggcacag gctgagttca ggagcattgg
     7321 atgtcaaggg taggaggcag agagggagga gaaaggggaa ggggaagg
//
LOCUS       XM_032650566            4326 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nardilysin convertase (NRDC), mRNA.
ACCESSION   XM_032650566
VERSION     XM_032650566.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-548               VOSU01000011.1     43570724-43571271   c
            549-864             VOSU01000011.1     43547462-43547777   c
            865-998             VOSU01000011.1     43544846-43544979   c
            999-1068            VOSU01000011.1     43543863-43543932   c
            1069-1150           VOSU01000011.1     43543621-43543702   c
            1151-1304           VOSU01000011.1     43542627-43542780   c
            1305-1378           VOSU01000011.1     43516975-43517048   c
            1379-1474           VOSU01000011.1     43511745-43511840   c
            1475-1597           VOSU01000011.1     43510554-43510676   c
            1598-1655           VOSU01000011.1     43508286-43508343   c
            1656-1729           VOSU01000011.1     43506457-43506530   c
            1730-1799           VOSU01000011.1     43505008-43505077   c
            1800-1877           VOSU01000011.1     43502550-43502627   c
            1878-1998           VOSU01000011.1     43500881-43501001   c
            1999-2057           VOSU01000011.1     43500741-43500799   c
            2058-2112           VOSU01000011.1     43500417-43500471   c
            2113-2145           VOSU01000011.1     43492444-43492476   c
            2146-2217           VOSU01000011.1     43492371-43492442   c
            2218-2341           VOSU01000011.1     43490695-43490818   c
            2342-2428           VOSU01000011.1     43490052-43490138   c
            2429-2548           VOSU01000011.1     43488161-43488280   c
            2549-2600           VOSU01000011.1     43486996-43487047   c
            2601-2751           VOSU01000011.1     43484604-43484754   c
            2752-2879           VOSU01000011.1     43482550-43482677   c
            2880-3042           VOSU01000011.1     43480815-43480977   c
            3043-3074           VOSU01000011.1     43478899-43478930   c
            3075-3213           VOSU01000011.1     43478513-43478651   c
            3214-3261           VOSU01000011.1     43476525-43476572   c
            3262-3314           VOSU01000011.1     43476185-43476237   c
            3315-3398           VOSU01000011.1     43475688-43475771   c
            3399-3489           VOSU01000011.1     43473785-43473875   c
            3490-3606           VOSU01000011.1     43473402-43473518   c
            3607-3696           VOSU01000011.1     43472332-43472421   c
            3697-4326           VOSU01000011.1     43471547-43472176   c
FEATURES             Location/Qualifiers
     source          1..4326
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4326
                     /gene="NRDC"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 mRNAs, 11 long SRA reads, 6 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763012"
     CDS             205..3894
                     /gene="NRDC"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: nardilysin"
                     /protein_id="XP_032506457.1"
                     /db_xref="GeneID:116763012"
                     /translation="MLRRVTVAAVGATRRKLWCEAGRELAALWRIEARGRCEDSAAAR
                     PFPILTMPGRNKAKSTCSYPDLQPNGQDFGRERRVARLGADESEEEGRRGPVSNVGDP
                     EIVKSPSDPKQYRYIKLRNGLQALLISDLSNVEGKMGDATDDEEEEEEEEEEEDDDDD
                     DNDDEDSGAEIEDDDEEGFDDEDEFDDDDEHDDDDLDTEDNELEELEERAEARKKTTE
                     KQQLQSLFLLLSKLTDRLWFKSTYTKMSSTLLVETRKLYGVVGAESRSAPLQHLAGWQ
                     EEEQQGETDTVLSAAALCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFL
                     KKHGGSDNASTDCERTVFQFDVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSE
                     YQLARPSDANRKEMLFGSLARPGHPMGKFFWGNAETLKHEPKRNNIDTHARLREFWMR
                     YYSAHYMTLVVQSKETLDTLEKWVTEIFSQIPNNGLPKPNFGHLTDPFDTPAFNKLYR
                     VVPIRKIHALTITWALPPQQQHYRVKPLHYISWLVGHEGKGSILSYLRKKCWALALFG
                     GNGETGFEQNSTYSVFSISITLTDEGYEHFYEVAHTVFQYLKMLQKLGPEKRIFEEIQ
                     KIEDNEFHYQEQTDPVEYVENMCENMQLYPLQDFLTGDQLLFEYKPEVIAEALNQLVP
                     QKANLVLLSGANEGKCDLKEKWFGTQYSMEDIENSWAELWESNFELNPDLHLPAENKY
                     IATDFMLKAFDCPETEYPVKIVNTPQGCLWYKKDNKFKIPKAYIRFHLISPLIQKSAA
                     NVVLFDIFVNILTHNLAEPAYEADVAQLEYKLVAGEHGLIIRVKGFNHKLPLLFQLII
                     DYLAEFSSTPAVFTMITEQLKKTYFNILIKPETLAKDVRLLILEYARWSMIDKYRALM
                     DGLSLESLLSFVRELKSQLFVEGLVQGNVTSTESMDFLKYVVDKLNFMPLEQEMPVQF
                     QVVELPSGHHLCKVRALNKGDANSEVTVYYQSGARSLQEYTLMELLVMHMEEPCFDFL
                     RTKQTLGYHVYPTCRNTSGILGFSVTVGTQATKYNSEVVDKKIEEFLSSFEEKIENLT
                     EDAFNTQVTALIKLKECEDTHLGEEVDRNWNEVVTQQYLFDRLAHEIEALKSFSKSDL
                     VNWFKAHRGPGSKMLSVHVVGFGKYEPEEDGTPSGEDSNSSCEVMQLTYLPTSPLLAD
                     CTIPIIDIRAFTSRLNLLPYHKIVK"
     misc_feature    1057..3750
                     /gene="NRDC"
                     /note="Secreted/periplasmic Zn-dependent peptidases,
                     insulinase-like [Posttranslational modification, protein
                     turnover, chaperones]; Region: Ptr; COG1025"
                     /db_xref="CDD:440648"
ORIGIN      
        1 atcgacggcc aggagggcgt ggggatgagg gaagttggcg tgagggagac cggattgggg
       61 gaggggttca ggcctgtccc cccgccggct gcggcagcac caccaccggc cgctaccgcc
      121 tctggaacgc tgaggaggag gagcagctgg agcaggaggt gggtcttggc gagcgggatg
      181 ccacttgctc cggcttggtg gtgaatgctg aggagagtca cggttgctgc agtcggtgcc
      241 accaggagga agttgtggtg tgaggccggg cgggagctcg cggcgctgtg gagaatagaa
      301 gcgcggggtc ggtgcgaaga ctcggcggct gccagacctt ttcctattct gaccatgcct
      361 ggaaggaaca aggcgaagtc cacctgcagc taccctgacc tgcagcccaa tggacaggat
      421 tttggacgag agcggcgggt tgctcgtctg ggagccgatg aatctgagga ggagggacgg
      481 agggggcctg tcagtaatgt cggagacccc gagatcgtca agtctcccag cgatcccaag
      541 caataccgat acatcaaatt acgaaatggc ttgcaggcac ttttgatttc agacctaagt
      601 aatgtggaag gtaaaatggg tgatgcaaca gatgatgaag aggaagaaga agaggaggaa
      661 gaagaagaag atgatgacga cgacgacaat gatgatgaag attctggagc ggaaatagaa
      721 gatgatgatg aagagggttt tgatgatgaa gatgagtttg atgatgatga tgaacatgat
      781 gatgatgatc ttgatactga ggataatgaa ttggaagaat tagaagagag ggcagaagct
      841 agaaagaaaa ccactgaaaa acagcaattg cagagcctgt ttttgctgtt gtcaaagctg
      901 actgatagac tgtggtttaa gtcaacttat acaaaaatgt cttcaaccct gctggtcgag
      961 acaagaaaac tttatggggt agttggagct gaaagcaggt ctgcacctct tcagcatttg
     1021 gcaggatggc aagaggagga gcagcagggt gaaactgaca cagttctgtc tgcagcggct
     1081 ctttgtgttg gagttgggag ttttgctgat ccagatgacc tgccagggct ggcacacttt
     1141 ttggagcaca tggtattcat gggtagtttg aaatatccag atgagaatgg gtttgacgcc
     1201 ttcctgaaga aacatggggg tagtgataat gcttcaactg attgtgaacg tacagtcttt
     1261 cagtttgatg tccagaggaa gtacttcaaa gaagccctgg atagatgggc ccaattcttc
     1321 atccatccac taatgatcag agatgcaatt gaccgggaag ttgaagctgt tgatagtgaa
     1381 tatcaacttg caagaccctc tgatgcaaac agaaaggaaa tgttgtttgg aagccttgct
     1441 agacctggac atcctatggg gaaatttttt tggggaaatg ctgagactct caaacatgaa
     1501 ccaaaaagaa ataatattga tacacatgct agattgagag aattctggat gcgttactat
     1561 tctgctcatt acatgacttt agtggttcaa tccaaagaaa cactggatac tttagaaaag
     1621 tgggtgactg aaatcttctc tcagatacca aacaatgggt tacccaaacc aaactttggc
     1681 catttaacgg atccatttga cacaccagca tttaacaaac tttatagagt tgttccaatc
     1741 agaaaaattc atgctctgac catcacatgg gcacttcccc ctcaacagca acattacagg
     1801 gtgaagccgc ttcattatat ctcttggctg gttggacatg aaggcaaagg cagcattctt
     1861 tcttacctta gaaaaaagtg ctgggctctt gcactatttg gtggaaatgg tgagacagga
     1921 tttgagcaaa attctactta ttcagtgttc agcatttcta ttacattgac tgatgaaggt
     1981 tatgaacatt tctatgaggt tgctcatact gtcttccagt atttaaaaat gctgcagaag
     2041 ctaggcccag aaaaaagaat ttttgaagag attcagaaaa ttgaggataa tgaatttcat
     2101 taccaagaac agacagatcc agttgagtat gtggaaaaca tgtgtgaaaa catgcagctg
     2161 tacccactac aggactttct cactggagat cagcttcttt ttgaatacaa gccagaagtc
     2221 attgctgaag cccttaatca gctagttcct caaaaggcaa atcttgttct actgtctggt
     2281 gctaatgagg gaaaatgtga cctcaaggag aaatggtttg ggactcagta tagtatggaa
     2341 gatattgaaa actcttgggc tgaactgtgg gagagtaatt ttgaattaaa tccagatctt
     2401 catcttccag ctgaaaacaa gtacatagcc acagatttca tgttgaaggc ttttgattgt
     2461 ccagagacag aataccctgt taaaattgtg aatactccac aaggttgcct atggtataag
     2521 aaagacaaca aattcaaaat ccccaaagca tatatacgtt tccatctgat ctcacctttg
     2581 atacagaagt ctgcagcaaa tgtggtcctc tttgatatct ttgtcaatat ccttacccat
     2641 aaccttgcgg aaccagctta tgaagcagat gtggcacagc tggagtataa gctggtagct
     2701 ggagaacatg gtttaattat tcgagtgaaa ggattcaacc acaaactacc tctgctgttt
     2761 cagcttatta ttgactactt agcagagttc agttccacac cagctgtctt tacaatgata
     2821 actgagcagt tgaagaagac ctacttcaac atcctcatca agcctgagac tctggccaaa
     2881 gacgttcggc ttttaatcct ggaatatgcc cgttggtcta tgattgacaa gtatcgggct
     2941 ttgatggatg gcctttccct tgagtctctg ctgagcttcg tcagagagtt aaaatcccag
     3001 ctctttgttg agggcctggt acaaggaaat gtcacaagca cagaatctat ggatttcctg
     3061 aaatacgttg ttgacaagtt gaacttcatg cctctggagc aggagatgcc tgtgcagttc
     3121 caggtggtag agctgcccag tggccaccac ctatgcaaag tgagagctct gaacaagggt
     3181 gatgccaact ctgaagttac tgtatactac cagtcaggtg ccaggagtct gcaagaatac
     3241 actcttatgg agctgcttgt gatgcacatg gaagagcctt gttttgactt ccttcgaacc
     3301 aagcagaccc ttgggtacca tgtctaccct acctgtagga atacatctgg gattctagga
     3361 ttctctgtca ctgtggggac tcaggcaacc aaatacaact ctgaagttgt tgataagaag
     3421 atagaagagt ttctttctag ctttgaggag aagatcgaga acctcactga ggatgcattc
     3481 aacacccagg tcacagctct gatcaagctg aaggagtgcg aggacaccca ccttggggag
     3541 gaggtggaca ggaactggaa tgaagtggtg acccagcagt atctctttga tcgccttgcc
     3601 catgagattg aagcactgaa atcattctca aaatcagacc tagtcaactg gttcaaggcc
     3661 catagaggac caggaagtaa aatgctcagc gttcatgttg ttggatttgg gaagtacgag
     3721 ccggaagagg atggtacccc ttccggtgag gattcaaact cttcttgtga agtgatgcag
     3781 ctaacctacc tgccaacctc tcctctgctg gcagattgta ccatccccat tattgatatc
     3841 agggctttca catcaagact taaccttctc ccctaccata aaatagtcaa ataaatggca
     3901 gtctcattgg cctgaagcac tgtgtattta aaagtgtttg tttgaatttt atgaagttag
     3961 ttacactact actgccttag ggcttccact gaatttttgc actggcatca tagaatttgt
     4021 cgtccccccc accccgcccc tcctgttgtg actaacaaac caagagttac tatagcagct
     4081 gcagagagaa attagcaggt gggccaatgt aaccaaaaag cttgcaggag ccatctgaga
     4141 cgccctggcc tgtcctggtc ctctcagatt gagaatccag ttctgtatga caggcttcag
     4201 aggccctatg taattgatgt cttcttagta cctaaatgcg aggtgctaat actaatacct
     4261 gtgttgttgt ttttaatgta tttaaaaata aaggtaattc tgtattgccc ttcagaatga
     4321 gccatt
//
LOCUS       XM_032650567            2863 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oxysterol binding protein like 9
            (OSBPL9), transcript variant X1, mRNA.
ACCESSION   XM_032650567
VERSION     XM_032650567.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2863
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2863
                     /gene="OSBPL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763028"
     CDS             21..2195
                     /gene="OSBPL9"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 9
                     isoform X1"
                     /protein_id="XP_032506458.1"
                     /db_xref="GeneID:116763028"
                     /translation="MASIMEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSKDKMMR
                     GSRRGCVRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDADEREKWIHALEETILRHT
                     LQLQGLDSGFVPSVQDFDKKLTEADAYLQILIEQLKLFDDKLQNCKDDEQRKKIETLK
                     ETTNSMVESIKHCIVLLQIAKSTINPVDAIYQPSPLEPVINTMPSQTVLPPEPAQLCK
                     SEQRPSSLPVGPVLATTLGHHQTPTPNSTGSGHSPPSSSLTSPSHVNLSPNTVPEFSY
                     SSSEDEFYDADEFHQSGSSPKHLIDSSGSASVLTHSSSGNSLKRPDTTESLNSSMSNG
                     TSDADLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPTFILERRSLL
                     EMYADFFAHPDLFVSISDQKDARDRMVQVVKWYLSAFHAGRKGSVAKKPYNPVLGEIF
                     QCHWTLPNDTEENVELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFN
                     AHIWTKSKFLGMSIGVHNIGQGCVSCLDHDEHYILTFPNGYGRSILTVPWVELGGECN
                     INCSKTGYSANIVFHTKPFYGGKKHRVTAEIFSPNDKKSFCSIEGEWNGVMYAKYSTG
                     ENVVFIDTKKLPIIKKKVRKLEDQNEYESRCLWKDVTFNLKIRDIDAATEAKHRLEER
                     QRAEARERKEKEIQWETRLFHEDGECWVYDEPLLKRLGAAKH"
     misc_feature    33..338
                     /gene="OSBPL9"
                     /note="Human Oxysterol binding protein related protein 9
                     Pleckstrin homology (PH) domain; Region: PH_ORP9; cd13290"
                     /db_xref="CDD:241444"
     misc_feature    1113..2153
                     /gene="OSBPL9"
                     /note="Oxysterol-binding protein; Region: Oxysterol_BP;
                     pfam01237"
                     /db_xref="CDD:460126"
ORIGIN      
        1 tgtcattggc ggctcccaag atggcgtcca tcatggaagg gccgctgagt aaatggacta
       61 acgtaatgaa gggctggcag taccgttggt tcgtgctgga ctacaatgca gggctgctct
      121 cctattacac atccaaggac aaaatgatga gaggctctcg cagaggatgt gttagactca
      181 gaggagctgt gattggtata gacgatgagg acgacagcac cttcacaata actgttgatc
      241 agaaaacctt ccatttccag gctcgtgatg ctgatgagcg agagaagtgg atccatgcct
      301 tagaagaaac tattcttcga catactcttc agcttcaagg tttggattca ggatttgttc
      361 ctagtgtcca agactttgat aagaaactta cagaggctga tgcttaccta caaatcttga
      421 tagaacagtt aaagcttttt gatgacaaac ttcaaaactg caaagatgat gaacagagaa
      481 agaaaattga aactctcaaa gagacaacaa atagcatggt agaatcaatt aaacactgca
      541 ttgtgttgct gcagatcgct aaaagtacta ttaatcctgt agatgcaata tatcaaccta
      601 gtcccttgga acctgtgatc aacacaatgc cttcccagac tgtcttacct ccagaacctg
      661 ctcagttgtg taagtcagag cagcgtccat cttctctacc agttggacct gtattagcta
      721 ctaccttggg acatcatcag actccaacac caaatagtac aggcagtggg cactcaccac
      781 ctagtagcag tctaacttct ccaagccatg tcaacttgtc tccaaacaca gtcccagagt
      841 tctcttattc tagcagtgaa gatgaattct atgatgcgga tgaattccat cagagtggct
      901 catccccaaa gcacttaata gattcctctg gatctgcctc agtcttgaca cacagcagct
      961 caggaaatag tctaaagcgc ccagatacca cggaatcact taattcttcc atgtccaatg
     1021 gaacaagtga tgctgacctt ttcgattcac atgatgatag agatgatgat ggggaggcag
     1081 ggtcggtgga agagcacaag agtgttatca tgcatctgtt gtcacaggtt aggcttggaa
     1141 tggatctcac taaggtagtt cttccaacat ttattcttga aagaagatct cttttagaaa
     1201 tgtatgcaga cttttttgca catccggacc tgtttgtgag tattagtgac cagaaggatg
     1261 ccagagaccg aatggttcag gttgtaaaat ggtacctctc agcctttcac gcaggaagga
     1321 aaggatcggt tgccaaaaag ccgtacaacc ccgttctggg cgagatcttt cagtgtcact
     1381 ggacattacc aaatgatact gaagagaatg tggagctagt ttcagaagga ccagttccct
     1441 gggtttccaa gaatagcgta acattcgtgg ctgagcaggt ttcccatcat ccacccattt
     1501 cagcctttta tgctgagtgc tttaacaaga agatacaatt caatgctcat atctggacca
     1561 aatcaaaatt ccttgggatg tcaattgggg tgcacaacat aggacagggc tgtgtctcgt
     1621 gtctagacca tgatgaacat tacattctca cattccccaa tggttatgga aggtctatcc
     1681 tcacagtgcc ctgggtggaa ctaggcggag aatgcaatat taattgttcc aagactggct
     1741 atagtgccaa tatcgtcttc cacactaaac ctttctatgg gggcaagaag cacagagtta
     1801 ctgctgagat tttttctcca aatgacaaga agtctttctg ctcaattgaa ggggaatgga
     1861 atggtgtaat gtatgcaaaa tactcaacag gggaaaatgt agtttttata gataccaaga
     1921 agttgcctat aatcaagaag aaagtgagga agttggaaga tcagaatgag tacgaatccc
     1981 gctgcctttg gaaggatgtc actttcaact taaaaatcag agacattgat gcagcaactg
     2041 aagccaagca tagacttgaa gaaagacaaa gagcagaagc ccgagaaagg aaggagaagg
     2101 aaattcagtg ggagacaagg ttatttcatg aagatggaga atgctgggtt tatgatgaac
     2161 cattactgaa acgtctcggt gctgcaaagc attaggttgg gaaatgcaag gtttgctcct
     2221 ggtgacccag gcaggaggca caatgaagta acagtcttcc tttgggagaa cctattcact
     2281 cccttcttat tgcagtggtt cctatctcag ggatactgga ctttctgatg cagatgaaca
     2341 attaaagcga gaaaagcttc cctttttcct gttctgtggc agttacagtg ttgacttcgg
     2401 tcttgagaag aaacttcagg ttttgaaaac aagatgtctg ctccttttcc aaatcccacg
     2461 ttataaatcc cagtctcaaa ctctgcactc tagtattgct gttgagatat acaacatgtt
     2521 tcctagctca tataatcttg ggttatatat atatatatat atatatatat atatatatac
     2581 acacacacac acacacacac acacacacac atatatacat atatataggt gatgccaggt
     2641 ttttcataaa tacgccatgt actgtaaata ttggttcctc tgagttgttt tagaaaattt
     2701 agcacaacgt attaaaacca catgttagga aatttcatgg tcttacctac aataactttt
     2761 attttggaat tgaactatta ttaaattgta tccaactctg gactacagtt taattatact
     2821 cagtgcttct taagccttca taaagtaatt tttccaacct ttt
//
LOCUS       XM_032650568            2392 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oxysterol binding protein like 9
            (OSBPL9), transcript variant X2, mRNA.
ACCESSION   XM_032650568
VERSION     XM_032650568.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2392
                     /gene="OSBPL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 18 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763028"
     CDS             14..2227
                     /gene="OSBPL9"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 9
                     isoform X2"
                     /protein_id="XP_032506459.1"
                     /db_xref="GeneID:116763028"
                     /translation="MASIMEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSKDKMMR
                     GSRRGCVRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDADEREKWIHALEETILRHT
                     LQLQGLDSGFVPSVQDFDKKLTEADAYLQILIEQLKLFDDKLQNCKDDEQRKKIETLK
                     ETTNSMVESIKHCIVLLQIAKDQCNAEKHADGIISTINPVDAIYQPSPLEPVINTMPS
                     QTVLPPEPAQLCKSEQRPSSLPVGPVLATTLGHHQTPTPNSTGSGHSPPSSSLTSPSH
                     VNLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKHLIDSSGSASVLTHSSSGNSLKRP
                     DTTESLNSSMSNGTSDADLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKV
                     VLPTFILERRSLLEMYADFFAHPDLFVSISDQKDARDRMVQVVKWYLSAFHAGRKGSV
                     AKKPYNPVLGEIFQCHWTLPNDTEENVELVSEGPVPWVSKNSVTFVAEQVSHHPPISA
                     FYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLDHDEHYILTFPNGYGRSI
                     LTVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRVTAEIFSPNDKKSFCSIEG
                     EWNGVMYAKYSTGENVVFIDTKKLPIIKKKVRKLEDQNEYESRCLWKDVTFNLKIRDI
                     DAATEAKHRLEERQRAEARERKEKEIQWETRLFHEDGECWVYDEPLLKRLGAAKH"
     misc_feature    26..331
                     /gene="OSBPL9"
                     /note="Human Oxysterol binding protein related protein 9
                     Pleckstrin homology (PH) domain; Region: PH_ORP9; cd13290"
                     /db_xref="CDD:241444"
     misc_feature    1145..2185
                     /gene="OSBPL9"
                     /note="Oxysterol-binding protein; Region: Oxysterol_BP;
                     pfam01237"
                     /db_xref="CDD:460126"
ORIGIN      
        1 ggcggctccc aagatggcgt ccatcatgga agggccgctg agtaaatgga ctaacgtaat
       61 gaagggctgg cagtaccgtt ggttcgtgct ggactacaat gcagggctgc tctcctatta
      121 cacatccaag gacaaaatga tgagaggctc tcgcagagga tgtgttagac tcagaggagc
      181 tgtgattggt atagacgatg aggacgacag caccttcaca ataactgttg atcagaaaac
      241 cttccatttc caggctcgtg atgctgatga gcgagagaag tggatccatg ccttagaaga
      301 aactattctt cgacatactc ttcagcttca aggtttggat tcaggatttg ttcctagtgt
      361 ccaagacttt gataagaaac ttacagaggc tgatgcttac ctacaaatct tgatagaaca
      421 gttaaagctt tttgatgaca aacttcaaaa ctgcaaagat gatgaacaga gaaagaaaat
      481 tgaaactctc aaagagacaa caaatagcat ggtagaatca attaaacact gcattgtgtt
      541 gctgcagatc gctaaagacc agtgtaatgc ggagaagcac gcagatggaa ttataagtac
      601 tattaatcct gtagatgcaa tatatcaacc tagtcccttg gaacctgtga tcaacacaat
      661 gccttcccag actgtcttac ctccagaacc tgctcagttg tgtaagtcag agcagcgtcc
      721 atcttctcta ccagttggac ctgtattagc tactaccttg ggacatcatc agactccaac
      781 accaaatagt acaggcagtg ggcactcacc acctagtagc agtctaactt ctccaagcca
      841 tgtcaacttg tctccaaaca cagtcccaga gttctcttat tctagcagtg aagatgaatt
      901 ctatgatgcg gatgaattcc atcagagtgg ctcatcccca aagcacttaa tagattcctc
      961 tggatctgcc tcagtcttga cacacagcag ctcaggaaat agtctaaagc gcccagatac
     1021 cacggaatca cttaattctt ccatgtccaa tggaacaagt gatgctgacc ttttcgattc
     1081 acatgatgat agagatgatg atggggaggc agggtcggtg gaagagcaca agagtgttat
     1141 catgcatctg ttgtcacagg ttaggcttgg aatggatctc actaaggtag ttcttccaac
     1201 atttattctt gaaagaagat ctcttttaga aatgtatgca gacttttttg cacatccgga
     1261 cctgtttgtg agtattagtg accagaagga tgccagagac cgaatggttc aggttgtaaa
     1321 atggtacctc tcagcctttc acgcaggaag gaaaggatcg gttgccaaaa agccgtacaa
     1381 ccccgttctg ggcgagatct ttcagtgtca ctggacatta ccaaatgata ctgaagagaa
     1441 tgtggagcta gtttcagaag gaccagttcc ctgggtttcc aagaatagcg taacattcgt
     1501 ggctgagcag gtttcccatc atccacccat ttcagccttt tatgctgagt gctttaacaa
     1561 gaagatacaa ttcaatgctc atatctggac caaatcaaaa ttccttggga tgtcaattgg
     1621 ggtgcacaac ataggacagg gctgtgtctc gtgtctagac catgatgaac attacattct
     1681 cacattcccc aatggttatg gaaggtctat cctcacagtg ccctgggtgg aactaggcgg
     1741 agaatgcaat attaattgtt ccaagactgg ctatagtgcc aatatcgtct tccacactaa
     1801 acctttctat gggggcaaga agcacagagt tactgctgag attttttctc caaatgacaa
     1861 gaagtctttc tgctcaattg aaggggaatg gaatggtgta atgtatgcaa aatactcaac
     1921 aggggaaaat gtagttttta tagataccaa gaagttgcct ataatcaaga agaaagtgag
     1981 gaagttggaa gatcagaatg agtacgaatc ccgctgcctt tggaaggatg tcactttcaa
     2041 cttaaaaatc agagacattg atgcagcaac tgaagccaag catagacttg aagaaagaca
     2101 aagagcagaa gcccgagaaa ggaaggagaa ggaaattcag tgggagacaa ggttatttca
     2161 tgaagatgga gaatgctggg tttatgatga accattactg aaacgtctcg gtgctgcaaa
     2221 gcattaggtt gggaaatgca aggtttgctc ctggtgaccc aggcaggagg cacaatgaag
     2281 taacagtctt cctttgggag aacctattca ctcccttctt attgcagtgg ttcctatctc
     2341 agggatactg gactttctga tgcagatgaa caattaaagc gagaaaagct tc
//
LOCUS       XM_032650569            2301 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oxysterol binding protein like 9
            (OSBPL9), transcript variant X3, mRNA.
ACCESSION   XM_032650569
VERSION     XM_032650569.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2301
                     /gene="OSBPL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763028"
     CDS             46..2136
                     /gene="OSBPL9"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 9
                     isoform X3"
                     /protein_id="XP_032506460.1"
                     /db_xref="GeneID:116763028"
                     /translation="MMRGSRRGCVRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDAD
                     EREKWIHALEETILRHTLQLQGLDSGFVPSVQDFDKKLTEADAYLQILIEQLKLFDDK
                     LQNCKDDEQRKKIETLKETTNSMVESIKHCIVLLQIAKDQCNAEKHADGIISTINPVD
                     AIYQPSPLEPVINTMPSQTVLPPEPAQLCKSEQRPSSLPVGPVLATTLGHHQTPTPNS
                     TGSGHSPPSSSLTSPSHVNLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKHLIDSSG
                     SASVLTHSSSGNSLKRPDTTESLNSSMSNGTSDADLFDSHDDRDDDGEAGSVEEHKSV
                     IMHLLSQVRLGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVSISDQKDARDRMVQ
                     VVKWYLSAFHAGRKGSVAKKPYNPVLGEIFQCHWTLPNDTEENVELVSEGPVPWVSKN
                     SVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLD
                     HDEHYILTFPNGYGRSILTVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRVT
                     AEIFSPNDKKSFCSIEGEWNGVMYAKYSTGENVVFIDTKKLPIIKKKVRKLEDQNEYE
                     SRCLWKDVTFNLKIRDIDAATEAKHRLEERQRAEARERKEKEIQWETRLFHEDGECWV
                     YDEPLLKRLGAAKH"
     misc_feature    <46..240
                     /gene="OSBPL9"
                     /note="Pleckstrin homology-like domain; Region: PH-like;
                     cl17171"
                     /db_xref="CDD:473070"
     misc_feature    1054..2094
                     /gene="OSBPL9"
                     /note="Oxysterol-binding protein; Region: Oxysterol_BP;
                     pfam01237"
                     /db_xref="CDD:460126"
ORIGIN      
        1 gagtccaggg atggaaattc aaatcagacg gagtccaagg acaaaatgat gagaggctct
       61 cgcagaggat gtgttagact cagaggagct gtgattggta tagacgatga ggacgacagc
      121 accttcacaa taactgttga tcagaaaacc ttccatttcc aggctcgtga tgctgatgag
      181 cgagagaagt ggatccatgc cttagaagaa actattcttc gacatactct tcagcttcaa
      241 ggtttggatt caggatttgt tcctagtgtc caagactttg ataagaaact tacagaggct
      301 gatgcttacc tacaaatctt gatagaacag ttaaagcttt ttgatgacaa acttcaaaac
      361 tgcaaagatg atgaacagag aaagaaaatt gaaactctca aagagacaac aaatagcatg
      421 gtagaatcaa ttaaacactg cattgtgttg ctgcagatcg ctaaagacca gtgtaatgcg
      481 gagaagcacg cagatggaat tataagtact attaatcctg tagatgcaat atatcaacct
      541 agtcccttgg aacctgtgat caacacaatg ccttcccaga ctgtcttacc tccagaacct
      601 gctcagttgt gtaagtcaga gcagcgtcca tcttctctac cagttggacc tgtattagct
      661 actaccttgg gacatcatca gactccaaca ccaaatagta caggcagtgg gcactcacca
      721 cctagtagca gtctaacttc tccaagccat gtcaacttgt ctccaaacac agtcccagag
      781 ttctcttatt ctagcagtga agatgaattc tatgatgcgg atgaattcca tcagagtggc
      841 tcatccccaa agcacttaat agattcctct ggatctgcct cagtcttgac acacagcagc
      901 tcaggaaata gtctaaagcg cccagatacc acggaatcac ttaattcttc catgtccaat
      961 ggaacaagtg atgctgacct tttcgattca catgatgata gagatgatga tggggaggca
     1021 gggtcggtgg aagagcacaa gagtgttatc atgcatctgt tgtcacaggt taggcttgga
     1081 atggatctca ctaaggtagt tcttccaaca tttattcttg aaagaagatc tcttttagaa
     1141 atgtatgcag acttttttgc acatccggac ctgtttgtga gtattagtga ccagaaggat
     1201 gccagagacc gaatggttca ggttgtaaaa tggtacctct cagcctttca cgcaggaagg
     1261 aaaggatcgg ttgccaaaaa gccgtacaac cccgttctgg gcgagatctt tcagtgtcac
     1321 tggacattac caaatgatac tgaagagaat gtggagctag tttcagaagg accagttccc
     1381 tgggtttcca agaatagcgt aacattcgtg gctgagcagg tttcccatca tccacccatt
     1441 tcagcctttt atgctgagtg ctttaacaag aagatacaat tcaatgctca tatctggacc
     1501 aaatcaaaat tccttgggat gtcaattggg gtgcacaaca taggacaggg ctgtgtctcg
     1561 tgtctagacc atgatgaaca ttacattctc acattcccca atggttatgg aaggtctatc
     1621 ctcacagtgc cctgggtgga actaggcgga gaatgcaata ttaattgttc caagactggc
     1681 tatagtgcca atatcgtctt ccacactaaa cctttctatg ggggcaagaa gcacagagtt
     1741 actgctgaga ttttttctcc aaatgacaag aagtctttct gctcaattga aggggaatgg
     1801 aatggtgtaa tgtatgcaaa atactcaaca ggggaaaatg tagtttttat agataccaag
     1861 aagttgccta taatcaagaa gaaagtgagg aagttggaag atcagaatga gtacgaatcc
     1921 cgctgccttt ggaaggatgt cactttcaac ttaaaaatca gagacattga tgcagcaact
     1981 gaagccaagc atagacttga agaaagacaa agagcagaag cccgagaaag gaaggagaag
     2041 gaaattcagt gggagacaag gttatttcat gaagatggag aatgctgggt ttatgatgaa
     2101 ccattactga aacgtctcgg tgctgcaaag cattaggttg ggaaatgcaa ggtttgctcc
     2161 tggtgaccca ggcaggaggc acaatgaagt aacagtcttc ctttgggaga acctattcac
     2221 tcccttctta ttgcagtggt tcctatctca gggatactgg actttctgat gcagatgaac
     2281 aattaaagcg agaaaagctt c
//
LOCUS       XM_032650570            2241 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oxysterol binding protein like 9
            (OSBPL9), transcript variant X4, mRNA.
ACCESSION   XM_032650570
VERSION     XM_032650570.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2241
                     /gene="OSBPL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763028"
     CDS             149..2071
                     /gene="OSBPL9"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 9
                     isoform X4"
                     /protein_id="XP_032506461.1"
                     /db_xref="GeneID:116763028"
                     /translation="MAFLTAACGGLDSGFVPSVQDFDKKLTEADAYLQILIEQLKLFD
                     DKLQNCKDDEQRKKIETLKETTNSMVESIKHCIVLLQIAKDQCNAEKHADGIISTINP
                     VDAIYQPSPLEPVINTMPSQTVLPPEPAQLCKSEQRPSSLPVGPVLATTLGHHQTPTP
                     NSTGSGHSPPSSSLTSPSHVNLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKHLIDS
                     SGSASVLTHSSSGNSLKRPDTTESLNSSMSNGTSDADLFDSHDDRDDDGEAGSVEEHK
                     SVIMHLLSQVRLGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVSISDQKDARDRM
                     VQVVKWYLSAFHAGRKGSVAKKPYNPVLGEIFQCHWTLPNDTEENVELVSEGPVPWVS
                     KNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSC
                     LDHDEHYILTFPNGYGRSILTVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHR
                     VTAEIFSPNDKKSFCSIEGEWNGVMYAKYSTGENVVFIDTKKLPIIKKKVRKLEDQNE
                     YESRCLWKDVTFNLKIRDIDAATEAKHRLEERQRAEARERKEKEIQWETRLFHEDGEC
                     WVYDEPLLKRLGAAKH"
     misc_feature    989..2029
                     /gene="OSBPL9"
                     /note="Oxysterol-binding protein; Region: Oxysterol_BP;
                     pfam01237"
                     /db_xref="CDD:460126"
ORIGIN      
        1 agaagggctg tcccggggga ccggctgaag ctgaccggac cgactgcgca tcagcccggt
       61 gatccggcgg agggaggaga agagggggtg cccggaagca gccctcggct ccctcccctg
      121 gaggcacaca gggcgggggc cttggcgaat ggctttcttg acggctgctt gcggaggttt
      181 ggattcagga tttgttccta gtgtccaaga ctttgataag aaacttacag aggctgatgc
      241 ttacctacaa atcttgatag aacagttaaa gctttttgat gacaaacttc aaaactgcaa
      301 agatgatgaa cagagaaaga aaattgaaac tctcaaagag acaacaaata gcatggtaga
      361 atcaattaaa cactgcattg tgttgctgca gatcgctaaa gaccagtgta atgcggagaa
      421 gcacgcagat ggaattataa gtactattaa tcctgtagat gcaatatatc aacctagtcc
      481 cttggaacct gtgatcaaca caatgccttc ccagactgtc ttacctccag aacctgctca
      541 gttgtgtaag tcagagcagc gtccatcttc tctaccagtt ggacctgtat tagctactac
      601 cttgggacat catcagactc caacaccaaa tagtacaggc agtgggcact caccacctag
      661 tagcagtcta acttctccaa gccatgtcaa cttgtctcca aacacagtcc cagagttctc
      721 ttattctagc agtgaagatg aattctatga tgcggatgaa ttccatcaga gtggctcatc
      781 cccaaagcac ttaatagatt cctctggatc tgcctcagtc ttgacacaca gcagctcagg
      841 aaatagtcta aagcgcccag ataccacgga atcacttaat tcttccatgt ccaatggaac
      901 aagtgatgct gaccttttcg attcacatga tgatagagat gatgatgggg aggcagggtc
      961 ggtggaagag cacaagagtg ttatcatgca tctgttgtca caggttaggc ttggaatgga
     1021 tctcactaag gtagttcttc caacatttat tcttgaaaga agatctcttt tagaaatgta
     1081 tgcagacttt tttgcacatc cggacctgtt tgtgagtatt agtgaccaga aggatgccag
     1141 agaccgaatg gttcaggttg taaaatggta cctctcagcc tttcacgcag gaaggaaagg
     1201 atcggttgcc aaaaagccgt acaaccccgt tctgggcgag atctttcagt gtcactggac
     1261 attaccaaat gatactgaag agaatgtgga gctagtttca gaaggaccag ttccctgggt
     1321 ttccaagaat agcgtaacat tcgtggctga gcaggtttcc catcatccac ccatttcagc
     1381 cttttatgct gagtgcttta acaagaagat acaattcaat gctcatatct ggaccaaatc
     1441 aaaattcctt gggatgtcaa ttggggtgca caacatagga cagggctgtg tctcgtgtct
     1501 agaccatgat gaacattaca ttctcacatt ccccaatggt tatggaaggt ctatcctcac
     1561 agtgccctgg gtggaactag gcggagaatg caatattaat tgttccaaga ctggctatag
     1621 tgccaatatc gtcttccaca ctaaaccttt ctatgggggc aagaagcaca gagttactgc
     1681 tgagattttt tctccaaatg acaagaagtc tttctgctca attgaagggg aatggaatgg
     1741 tgtaatgtat gcaaaatact caacagggga aaatgtagtt tttatagata ccaagaagtt
     1801 gcctataatc aagaagaaag tgaggaagtt ggaagatcag aatgagtacg aatcccgctg
     1861 cctttggaag gatgtcactt tcaacttaaa aatcagagac attgatgcag caactgaagc
     1921 caagcataga cttgaagaaa gacaaagagc agaagcccga gaaaggaagg agaaggaaat
     1981 tcagtgggag acaaggttat ttcatgaaga tggagaatgc tgggtttatg atgaaccatt
     2041 actgaaacgt ctcggtgctg caaagcatta ggttgggaaa tgcaaggttt gctcctggtg
     2101 acccaggcag gaggcacaat gaagtaacag tcttcctttg ggagaaccta ttcactccct
     2161 tcttattgca gtggttccta tctcagggat actggacttt ctgatgcaga tgaacaatta
     2221 aagcgagaaa agcttccctt t
//
LOCUS       XM_032650571            2359 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oxysterol binding protein like 9
            (OSBPL9), transcript variant X5, mRNA.
ACCESSION   XM_032650571
VERSION     XM_032650571.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2359
                     /gene="OSBPL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 13 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763028"
     CDS             471..2189
                     /gene="OSBPL9"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 9
                     isoform X5"
                     /protein_id="XP_032506462.1"
                     /db_xref="GeneID:116763028"
                     /translation="MVESIKHCIVLLQIAKDQCNAEKHADGIISTINPVDAIYQPSPL
                     EPVINTMPSQTVLPPEPAQLCKSEQRPSSLPVGPVLATTLGHHQTPTPNSTGSGHSPP
                     SSSLTSPSHVNLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKHLIDSSGSASVLTHS
                     SSGNSLKRPDTTESLNSSMSNGTSDADLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQV
                     RLGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVSISDQKDARDRMVQVVKWYLSA
                     FHAGRKGSVAKKPYNPVLGEIFQCHWTLPNDTEENVELVSEGPVPWVSKNSVTFVAEQ
                     VSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLDHDEHYILT
                     FPNGYGRSILTVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRVTAEIFSPND
                     KKSFCSIEGEWNGVMYAKYSTGENVVFIDTKKLPIIKKKVRKLEDQNEYESRCLWKDV
                     TFNLKIRDIDAATEAKHRLEERQRAEARERKEKEIQWETRLFHEDGECWVYDEPLLKR
                     LGAAKH"
     misc_feature    1107..2147
                     /gene="OSBPL9"
                     /note="Oxysterol-binding protein; Region: Oxysterol_BP;
                     pfam01237"
                     /db_xref="CDD:460126"
ORIGIN      
        1 cccgggggac cggctgaagc tgaccggacc gactgcgcat cagcccggtg atccggcgga
       61 gggaggagaa gagggggtgc ccggaagcag ccctcggctc cctcccctgg aggcacacag
      121 ggcgggggcc ttggcgaatg gctttcttga cggctgcttg cggagtgagt agacccggag
      181 ggtctgggag aggggccggc tcccacccct gagtccccag ggaccctgct gcctgcccgg
      241 gccgtgggcg cgaatgtcgt tctctccctg cctccttccc gccgcgccct gggggtttgg
      301 attcaggatt tgttcctagt gtccaagact ttgataagaa acttacagag gctgatgctt
      361 acctacaaat cttgatagaa cagttaaagc tttttgatga caaacttcaa aactgcaaag
      421 atgatgaaca gagaaagaaa attgaaactc tcaaagagac aacaaatagc atggtagaat
      481 caattaaaca ctgcattgtg ttgctgcaga tcgctaaaga ccagtgtaat gcggagaagc
      541 acgcagatgg aattataagt actattaatc ctgtagatgc aatatatcaa cctagtccct
      601 tggaacctgt gatcaacaca atgccttccc agactgtctt acctccagaa cctgctcagt
      661 tgtgtaagtc agagcagcgt ccatcttctc taccagttgg acctgtatta gctactacct
      721 tgggacatca tcagactcca acaccaaata gtacaggcag tgggcactca ccacctagta
      781 gcagtctaac ttctccaagc catgtcaact tgtctccaaa cacagtccca gagttctctt
      841 attctagcag tgaagatgaa ttctatgatg cggatgaatt ccatcagagt ggctcatccc
      901 caaagcactt aatagattcc tctggatctg cctcagtctt gacacacagc agctcaggaa
      961 atagtctaaa gcgcccagat accacggaat cacttaattc ttccatgtcc aatggaacaa
     1021 gtgatgctga ccttttcgat tcacatgatg atagagatga tgatggggag gcagggtcgg
     1081 tggaagagca caagagtgtt atcatgcatc tgttgtcaca ggttaggctt ggaatggatc
     1141 tcactaaggt agttcttcca acatttattc ttgaaagaag atctctttta gaaatgtatg
     1201 cagacttttt tgcacatccg gacctgtttg tgagtattag tgaccagaag gatgccagag
     1261 accgaatggt tcaggttgta aaatggtacc tctcagcctt tcacgcagga aggaaaggat
     1321 cggttgccaa aaagccgtac aaccccgttc tgggcgagat ctttcagtgt cactggacat
     1381 taccaaatga tactgaagag aatgtggagc tagtttcaga aggaccagtt ccctgggttt
     1441 ccaagaatag cgtaacattc gtggctgagc aggtttccca tcatccaccc atttcagcct
     1501 tttatgctga gtgctttaac aagaagatac aattcaatgc tcatatctgg accaaatcaa
     1561 aattccttgg gatgtcaatt ggggtgcaca acataggaca gggctgtgtc tcgtgtctag
     1621 accatgatga acattacatt ctcacattcc ccaatggtta tggaaggtct atcctcacag
     1681 tgccctgggt ggaactaggc ggagaatgca atattaattg ttccaagact ggctatagtg
     1741 ccaatatcgt cttccacact aaacctttct atgggggcaa gaagcacaga gttactgctg
     1801 agattttttc tccaaatgac aagaagtctt tctgctcaat tgaaggggaa tggaatggtg
     1861 taatgtatgc aaaatactca acaggggaaa atgtagtttt tatagatacc aagaagttgc
     1921 ctataatcaa gaagaaagtg aggaagttgg aagatcagaa tgagtacgaa tcccgctgcc
     1981 tttggaagga tgtcactttc aacttaaaaa tcagagacat tgatgcagca actgaagcca
     2041 agcatagact tgaagaaaga caaagagcag aagcccgaga aaggaaggag aaggaaattc
     2101 agtgggagac aaggttattt catgaagatg gagaatgctg ggtttatgat gaaccattac
     2161 tgaaacgtct cggtgctgca aagcattagg ttgggaaatg caaggtttgc tcctggtgac
     2221 ccaggcagga ggcacaatga agtaacagtc ttcctttggg agaacctatt cactcccttc
     2281 ttattgcagt ggttcctatc tcagggatac tggactttct gatgcagatg aacaattaaa
     2341 gcgagaaaag cttcccttt
//
LOCUS       XM_032650572            2531 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oxysterol binding protein like 9
            (OSBPL9), transcript variant X6, mRNA.
ACCESSION   XM_032650572
VERSION     XM_032650572.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2531
                     /gene="OSBPL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 12 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763028"
     CDS             648..2366
                     /gene="OSBPL9"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 9
                     isoform X5"
                     /protein_id="XP_032506463.1"
                     /db_xref="GeneID:116763028"
                     /translation="MVESIKHCIVLLQIAKDQCNAEKHADGIISTINPVDAIYQPSPL
                     EPVINTMPSQTVLPPEPAQLCKSEQRPSSLPVGPVLATTLGHHQTPTPNSTGSGHSPP
                     SSSLTSPSHVNLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKHLIDSSGSASVLTHS
                     SSGNSLKRPDTTESLNSSMSNGTSDADLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQV
                     RLGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVSISDQKDARDRMVQVVKWYLSA
                     FHAGRKGSVAKKPYNPVLGEIFQCHWTLPNDTEENVELVSEGPVPWVSKNSVTFVAEQ
                     VSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLDHDEHYILT
                     FPNGYGRSILTVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRVTAEIFSPND
                     KKSFCSIEGEWNGVMYAKYSTGENVVFIDTKKLPIIKKKVRKLEDQNEYESRCLWKDV
                     TFNLKIRDIDAATEAKHRLEERQRAEARERKEKEIQWETRLFHEDGECWVYDEPLLKR
                     LGAAKH"
     misc_feature    1284..2324
                     /gene="OSBPL9"
                     /note="Oxysterol-binding protein; Region: Oxysterol_BP;
                     pfam01237"
                     /db_xref="CDD:460126"
ORIGIN      
        1 gcatcagccc ggtgatccgg cggagggagg agaagagggg gtgcccggaa gcagccctcg
       61 gctccctccc ctggaggcac acagggcggg ggccttggcg aatggctttc ttgacggctg
      121 cttgcggagt gagtagaccc ggagggtctg ggagaggggc cggctcccac ccctgagtcc
      181 ccagggaccc tgctgcctgc ccgggccgtg ggcgcgaatg tcgttctctc cctgcctcct
      241 tcccgccgcg ccctggggtg agtaggacga cgtggccgcc cgagccctct cttctctggg
      301 actctcctca cttcctccgc cgggatggtt ggaggcagag gctaggggcc taattctgta
      361 ccactgagag gttcgccacc aaaccagcct ggagagaatc gcttcccctt tttcgattca
      421 ttttcgtgga attctgtttt cctttcgaaa gctgtctcaa gatactaaac ggtttggatt
      481 caggatttgt tcctagtgtc caagactttg ataagaaact tacagaggct gatgcttacc
      541 tacaaatctt gatagaacag ttaaagcttt ttgatgacaa acttcaaaac tgcaaagatg
      601 atgaacagag aaagaaaatt gaaactctca aagagacaac aaatagcatg gtagaatcaa
      661 ttaaacactg cattgtgttg ctgcagatcg ctaaagacca gtgtaatgcg gagaagcacg
      721 cagatggaat tataagtact attaatcctg tagatgcaat atatcaacct agtcccttgg
      781 aacctgtgat caacacaatg ccttcccaga ctgtcttacc tccagaacct gctcagttgt
      841 gtaagtcaga gcagcgtcca tcttctctac cagttggacc tgtattagct actaccttgg
      901 gacatcatca gactccaaca ccaaatagta caggcagtgg gcactcacca cctagtagca
      961 gtctaacttc tccaagccat gtcaacttgt ctccaaacac agtcccagag ttctcttatt
     1021 ctagcagtga agatgaattc tatgatgcgg atgaattcca tcagagtggc tcatccccaa
     1081 agcacttaat agattcctct ggatctgcct cagtcttgac acacagcagc tcaggaaata
     1141 gtctaaagcg cccagatacc acggaatcac ttaattcttc catgtccaat ggaacaagtg
     1201 atgctgacct tttcgattca catgatgata gagatgatga tggggaggca gggtcggtgg
     1261 aagagcacaa gagtgttatc atgcatctgt tgtcacaggt taggcttgga atggatctca
     1321 ctaaggtagt tcttccaaca tttattcttg aaagaagatc tcttttagaa atgtatgcag
     1381 acttttttgc acatccggac ctgtttgtga gtattagtga ccagaaggat gccagagacc
     1441 gaatggttca ggttgtaaaa tggtacctct cagcctttca cgcaggaagg aaaggatcgg
     1501 ttgccaaaaa gccgtacaac cccgttctgg gcgagatctt tcagtgtcac tggacattac
     1561 caaatgatac tgaagagaat gtggagctag tttcagaagg accagttccc tgggtttcca
     1621 agaatagcgt aacattcgtg gctgagcagg tttcccatca tccacccatt tcagcctttt
     1681 atgctgagtg ctttaacaag aagatacaat tcaatgctca tatctggacc aaatcaaaat
     1741 tccttgggat gtcaattggg gtgcacaaca taggacaggg ctgtgtctcg tgtctagacc
     1801 atgatgaaca ttacattctc acattcccca atggttatgg aaggtctatc ctcacagtgc
     1861 cctgggtgga actaggcgga gaatgcaata ttaattgttc caagactggc tatagtgcca
     1921 atatcgtctt ccacactaaa cctttctatg ggggcaagaa gcacagagtt actgctgaga
     1981 ttttttctcc aaatgacaag aagtctttct gctcaattga aggggaatgg aatggtgtaa
     2041 tgtatgcaaa atactcaaca ggggaaaatg tagtttttat agataccaag aagttgccta
     2101 taatcaagaa gaaagtgagg aagttggaag atcagaatga gtacgaatcc cgctgccttt
     2161 ggaaggatgt cactttcaac ttaaaaatca gagacattga tgcagcaact gaagccaagc
     2221 atagacttga agaaagacaa agagcagaag cccgagaaag gaaggagaag gaaattcagt
     2281 gggagacaag gttatttcat gaagatggag aatgctgggt ttatgatgaa ccattactga
     2341 aacgtctcgg tgctgcaaag cattaggttg ggaaatgcaa ggtttgctcc tggtgaccca
     2401 ggcaggaggc acaatgaagt aacagtcttc ctttgggaga acctattcac tcccttctta
     2461 ttgcagtggt tcctatctca gggatactgg actttctgat gcagatgaac aattaaagcg
     2521 agaaaagctt c
//
LOCUS       XM_032650573            2270 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oxysterol binding protein like 9
            (OSBPL9), transcript variant X7, mRNA.
ACCESSION   XM_032650573
VERSION     XM_032650573.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2270
                     /gene="OSBPL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763028"
     CDS             427..2106
                     /gene="OSBPL9"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 9
                     isoform X6"
                     /protein_id="XP_032506464.1"
                     /db_xref="GeneID:116763028"
                     /translation="MVESIKHCIVLLQIAKSTINPVDAIYQPSPLEPVINTMPSQTVL
                     PPEPAQLCKSEQRPSSLPVGPVLATTLGHHQTPTPNSTGSGHSPPSSSLTSPSHVNLS
                     PNTVPEFSYSSSEDEFYDADEFHQSGSSPKHLIDSSGSASVLTHSSSGNSLKRPDTTE
                     SLNSSMSNGTSDADLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPT
                     FILERRSLLEMYADFFAHPDLFVSISDQKDARDRMVQVVKWYLSAFHAGRKGSVAKKP
                     YNPVLGEIFQCHWTLPNDTEENVELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAE
                     CFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLDHDEHYILTFPNGYGRSILTVP
                     WVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRVTAEIFSPNDKKSFCSIEGEWNG
                     VMYAKYSTGENVVFIDTKKLPIIKKKVRKLEDQNEYESRCLWKDVTFNLKIRDIDAAT
                     EAKHRLEERQRAEARERKEKEIQWETRLFHEDGECWVYDEPLLKRLGAAKH"
     misc_feature    1024..2064
                     /gene="OSBPL9"
                     /note="Oxysterol-binding protein; Region: Oxysterol_BP;
                     pfam01237"
                     /db_xref="CDD:460126"
ORIGIN      
        1 ccggtgatcc ggcggaggga ggagaagagg gggtgcccgg aagcagccct cggctccctc
       61 ccctggaggc acacagggcg ggggccttgg cgaatggctt tcttgacggc tgcttgcgga
      121 gtgagtagac ccggagggtc tgggagaggg gccggctccc acccctgagt ccccagggac
      181 cctgctgcct gcccgggccg tgggcgcgaa tgtcgttctc tccctgcctc cttcccgccg
      241 cgccctgggg gtttggattc aggatttgtt cctagtgtcc aagactttga taagaaactt
      301 acagaggctg atgcttacct acaaatcttg atagaacagt taaagctttt tgatgacaaa
      361 cttcaaaact gcaaagatga tgaacagaga aagaaaattg aaactctcaa agagacaaca
      421 aatagcatgg tagaatcaat taaacactgc attgtgttgc tgcagatcgc taaaagtact
      481 attaatcctg tagatgcaat atatcaacct agtcccttgg aacctgtgat caacacaatg
      541 ccttcccaga ctgtcttacc tccagaacct gctcagttgt gtaagtcaga gcagcgtcca
      601 tcttctctac cagttggacc tgtattagct actaccttgg gacatcatca gactccaaca
      661 ccaaatagta caggcagtgg gcactcacca cctagtagca gtctaacttc tccaagccat
      721 gtcaacttgt ctccaaacac agtcccagag ttctcttatt ctagcagtga agatgaattc
      781 tatgatgcgg atgaattcca tcagagtggc tcatccccaa agcacttaat agattcctct
      841 ggatctgcct cagtcttgac acacagcagc tcaggaaata gtctaaagcg cccagatacc
      901 acggaatcac ttaattcttc catgtccaat ggaacaagtg atgctgacct tttcgattca
      961 catgatgata gagatgatga tggggaggca gggtcggtgg aagagcacaa gagtgttatc
     1021 atgcatctgt tgtcacaggt taggcttgga atggatctca ctaaggtagt tcttccaaca
     1081 tttattcttg aaagaagatc tcttttagaa atgtatgcag acttttttgc acatccggac
     1141 ctgtttgtga gtattagtga ccagaaggat gccagagacc gaatggttca ggttgtaaaa
     1201 tggtacctct cagcctttca cgcaggaagg aaaggatcgg ttgccaaaaa gccgtacaac
     1261 cccgttctgg gcgagatctt tcagtgtcac tggacattac caaatgatac tgaagagaat
     1321 gtggagctag tttcagaagg accagttccc tgggtttcca agaatagcgt aacattcgtg
     1381 gctgagcagg tttcccatca tccacccatt tcagcctttt atgctgagtg ctttaacaag
     1441 aagatacaat tcaatgctca tatctggacc aaatcaaaat tccttgggat gtcaattggg
     1501 gtgcacaaca taggacaggg ctgtgtctcg tgtctagacc atgatgaaca ttacattctc
     1561 acattcccca atggttatgg aaggtctatc ctcacagtgc cctgggtgga actaggcgga
     1621 gaatgcaata ttaattgttc caagactggc tatagtgcca atatcgtctt ccacactaaa
     1681 cctttctatg ggggcaagaa gcacagagtt actgctgaga ttttttctcc aaatgacaag
     1741 aagtctttct gctcaattga aggggaatgg aatggtgtaa tgtatgcaaa atactcaaca
     1801 ggggaaaatg tagtttttat agataccaag aagttgccta taatcaagaa gaaagtgagg
     1861 aagttggaag atcagaatga gtacgaatcc cgctgccttt ggaaggatgt cactttcaac
     1921 ttaaaaatca gagacattga tgcagcaact gaagccaagc atagacttga agaaagacaa
     1981 agagcagaag cccgagaaag gaaggagaag gaaattcagt gggagacaag gttatttcat
     2041 gaagatggag aatgctgggt ttatgatgaa ccattactga aacgtctcgg tgctgcaaag
     2101 cattaggttg ggaaatgcaa ggtttgctcc tggtgaccca ggcaggaggc acaatgaagt
     2161 aacagtcttc ctttgggaga acctattcac tcccttctta ttgcagtggt tcctatctca
     2221 gggatactgg actttctgat gcagatgaac aattaaagcg agaaaagctt
//
LOCUS       XM_032650575            8235 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 1B (DENND1B),
            transcript variant X1, mRNA.
ACCESSION   XM_032650575
VERSION     XM_032650575.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8235
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8235
                     /gene="DENND1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763105"
     CDS             93..2423
                     /gene="DENND1B"
                     /codon_start=1
                     /product="DENN domain-containing protein 1B isoform X1"
                     /protein_id="XP_032506466.1"
                     /db_xref="GeneID:116763105"
                     /translation="MDCRTKENPERTFDLVLRVKRHASEDEDPEVLWKFPEDFADQEV
                     LQTVPKFCFPFDVERVSQNQVGQHFAFVLTDIESKQRFGFCRLTSGGKICLCILSYLP
                     WFEVYYKLLNTLADYLAKELEDDLNETLKSLYNQPVPKANTPVNLSVNQEIFIASEQV
                     LKDQPSLAQHSYFIAPDVTGLPTIPESRNLTEYFVAVDANNMLQLYASMLHERRIIIT
                     SGKLSTLTACLHGSVALLYPMYWQHIYIPALPPHLLDYCCAPMPYLIGIHSSLIERVK
                     SKSLEDVVMLNVDTNTLESPFNDLSSLPSDVVSALKNKLKKQSTATGDGVARAFLRAQ
                     AALFGSYRDALRYKPGEPITFCEESFVKHRSSLMKHFLETAVNLQLFKQFIDGRLAKL
                     NAGKGFSDVFEEEITSGGFCGGNSRSYQQWVHTVKKGGALLNTAMTKATPAVRTAYKF
                     AKNHAKQGIKEVKSKLRHKENEDDYGTCSGSVQYTPVYTLRSEKGRNLARRKLAQPRL
                     RRTLQSLDGVLCADNDEDAERASKLSSEDGEEASAYFYESDDSLETRAQAPSSGEMDL
                     LGEILDTLSTHSQDQGKLAAARSLDFFRSMDDIDYKPTNKSNTPSENNLALLCGGSGD
                     QAEWHLGQDDSALHGRQLPPSPRKRVASSAGTDCLSILKEENGERRLSVGAASRPAEL
                     GGPDPAPGLGLPLASPGASQTEKKETLSQTPGGPLAPSLGRHPSFVPWEKEGKGAKET
                     SEGSGLLQEVVSLCHVTSAFQQDLNISEGKTSGNQA"
     misc_feature    117..359
                     /gene="DENND1B"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    372..965
                     /gene="DENND1B"
                     /note="Domain found in a variety of signalling proteins,
                     always encircled by uDENN and dDENN; Region: DENN;
                     smart00799"
                     /db_xref="CDD:214823"
     misc_feature    1059..1256
                     /gene="DENND1B"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
ORIGIN      
        1 cgcagctcca ccgccgggcc gcggccgccg ggctctgagc ggccgttccc gcggcggccg
       61 gcggggcggg gcggcccccg cgacatgcag ccatggactg caggaccaag gaaaatccag
      121 aaagaacctt tgacttggta ttgagagtga aacgtcatgc ctcagaagat gaagatccgg
      181 aggtattgtg gaagttccca gaggactttg cagaccagga agtactacag actgtgccaa
      241 agttctgttt cccctttgac gttgaaagag tgtctcagaa tcaagtcgga cagcactttg
      301 cctttgtact gacagacatt gaaagtaaac agagatttgg attctgccga ctcacatcgg
      361 gagggaaaat ctgcttatgc atccttagtt acctgccatg gtttgaagta tattacaagc
      421 ttctaaatac tctggcagac tacttggcta aggaactgga agatgatttg aatgaaactc
      481 tcaaatcact ctataaccag ccagtaccaa aggcaaacac tcctgtcaat ttgagtgtga
      541 accaagagat atttattgcc agtgagcaag ttctgaaaga tcagccctcc ctagcacagc
      601 attcctactt cattgcccct gatgtaactg gactcccaac aataccggag agtaggaacc
      661 tcacggagta ctttgtggct gtggacgcga acaacatgct gcaactctac gccagcatgc
      721 tgcacgagag gcgcatcatc atcacctccg gcaaactcag caccttaacc gcctgtctcc
      781 atggatcggt cgccctgctc tacccgatgt actggcagca catctacatc ccagcgctcc
      841 ctcctcatct gctggactac tgctgtgccc caatgccata cctgatcgga atacactcca
      901 gcctcataga gagagtgaaa agtaaatcat tggaggatgt ggttatgttg aatgttgaca
      961 caaacacttt agaatcacca tttaatgact tgagcagcct accgagtgac gtggtctcgg
     1021 ccctgaaaaa taaactgaag aagcagtcta cagctacggg ggacggagtg gctagggcct
     1081 tcctgagggc gcaggctgct ttgtttggat cctacagaga tgcactgaga tacaaacctg
     1141 gtgagcccat cacgttctgt gaggagagtt tcgtcaagca ccgctcaagt ctgatgaaac
     1201 atttcttaga aaccgcagtt aacctccagc tttttaagca gtttatcgat ggtcgactgg
     1261 caaaactaaa tgcaggaaag ggtttctctg atgtatttga agaagagatc acttcaggtg
     1321 gcttttgtgg agggaactcg aggtcatatc agcaatgggt gcatacagtc aagaagggag
     1381 gtgcactact caacacagca atgaccaaag caacccccgc tgtgcgaaca gcatataaat
     1441 ttgcaaagaa tcatgcaaag cagggaataa aggaagtgaa gagtaagctg agacacaagg
     1501 aaaatgagga cgattatggg acttgttctg gttctgtaca atatacgccc gtctacacac
     1561 tacgcagtga aaagggaaga aacctagcaa ggcgtaagct tgcccagcca cgcctaagaa
     1621 ggactcttca gagcctggat ggtgttctgt gcgctgacaa tgatgaggac gcagaaagag
     1681 ctagcaagtt gtcctctgaa gacggagaag aagcgtctgc ttatttctac gaaagtgacg
     1741 actctcttga aaccagagca caggcccctt cctcgggtga gatggacttg ctgggcgaga
     1801 tcctggacac gctgagcaca cacagccagg accaggggaa gctggcggcg gccaggagcc
     1861 tggacttctt tagatcgatg gacgacatcg attacaagcc cacgaataaa tccaacacgc
     1921 ccagtgagaa caacctggcc ctgctttgcg gtggttccgg tgaccaggcc gagtggcacc
     1981 tggggcagga cgacagtgcc ctccacggca ggcagctccc gccctcgccc aggaagcggg
     2041 tggcctccag cgcgggaacg gactgtctgt ccatcctcaa ggaggagaac ggtgagcgac
     2101 gcctcagcgt gggtgccgcg agccggcccg cggagctggg agggccggac cccgctccag
     2161 gactgggttt gccgctggct tcgcccggag cttcccaaac agagaagaaa gaaacactaa
     2221 gccagactcc gggtggtccg ctggcaccca gccttgggcg ccatccgtct tttgttcctt
     2281 gggagaaaga agggaaagga gccaaagaga cttcagaagg ttctggactg cttcaggagg
     2341 tggtgtcgtt atgccacgta acatctgcct tccagcaaga cttaaacatc tcagaaggaa
     2401 aaacaagtgg aaaccaagct taaatcaaca aatgaagagt ctgtcgcttg catccaagtt
     2461 tctacggagg cattttagga gtccctgtac cctatcataa acaaggattg gtagaaaaga
     2521 caactcttcc taccgtctaa acattgtttt tcatttggga cagttctccc actcgtctgt
     2581 ctcgcggtat atagatttat ccactgattt ttaaatgtaa agctaactct tctactctac
     2641 tcttaaatca ggtactagct tgtatgtatg ttgaaagtat atattgaaca tatgatttcc
     2701 cagtatttgg tgcttaacgc cacttatttt atttaaacga agtatgcatc taacccttgc
     2761 acataaccag tagctactgt actaacctgg ttgagcatga actggccaag gtaccaaaac
     2821 ctatcagaac tagcctgaaa ctgttgacca actaattgcc ttaatcttaa gcctatatta
     2881 agcatactta cttacataat ttatggaatt acaggtagat tttgaaagat aagttataag
     2941 tgttctgcag agcaataatg cctttttcta ttcatcaaat caaggacaaa attcattttt
     3001 tcaaagttaa aaagctctct tctggacact gcagccatgt tttccaaaag gtataaaggt
     3061 tcgcatttac cttacatgtc actcagcgaa atatatgaag tgctggatta caatgtgaaa
     3121 ttaatgactt ctgtttacaa atgacacttt tttttcacag tctttctgta tgactttgct
     3181 aaagtaggag tcacccccag gaagccaaat gtgacataaa ctgtcctgat aaaaaagtat
     3241 tcctatctgt ttttccctta actaataatt ctctaccaga atgcttcata tctcagatgg
     3301 acttcttaaa ataattgact ttatattttg gaagtttcaa atttatagaa accgtgtgga
     3361 gaaagtacag tgtccccatg tctccctact cagtttccgc tgtttttcat atcctatgat
     3421 gtcagtgcgg tacgtcttca caattcatga accatgctcc gtgcacattt ccttagtttt
     3481 cccctaccat ccttcttctg tcccagaatc ccacccaggg accacatcac acttggctgc
     3541 cacagctccg taggctcctc ttggctgtga ccctctctca gactttgctg gtttttgacg
     3601 accttgacag ttttcaagag gactgggcag atatagatat gctgtaggat gcccctctgc
     3661 tggaacttgt ctggtgtttt tctcatgatt gattgattgt aacaggaccg ttgggtttgg
     3721 gggagggggt tacagaagaa aagtgccgtc ttcatcatta catcttatca agggtccgtg
     3781 ctgtgcccgt gacttgtgaa tgttgatgtt ggccttggtc accaggctga ggtggcgttt
     3841 gtggggttcc tcccctgtaa agccgttcct tcccctgccg ctcctactgc cgtcttcagg
     3901 aggaggtcgc cgtgcgcggc ccacactgag gcttggggct cgtgcttcct ctccgtgagg
     3961 gcacggaatc cacgtaaatt acttggagtt cttctacatg ggacatcgtc tcctctctct
     4021 caaattcact gtcacgcttt gaagttcacc tgagaaggaa tcgtgcattg actgcttgat
     4081 gattggctag attgacagga ataatcagga aaaaaaccca gtgatgctgt ggttcatttg
     4141 ttgttagtat gttcagtata tatactctat acgtccccac tcatgatttt tttttacatt
     4201 atcattttag gaaaggtgtt tgagaaccca ttcaagaacc ctcatcaaga ctgtgctcta
     4261 aaatatttac tgaaatcata atttaatttt cgattaaaat cctggaaggg ggtttgttaa
     4321 aaacattgct taaaatattc attcaggtca gtctttaaat aatttaaaga aaatgaccaa
     4381 gttttacttt tctaaagtgc atttcaaaat ctcaatggat atattttggg aggacaatta
     4441 ttcattcatg tttatgaagg aaaacaagga agaccttgtt ttccatataa ggatagacta
     4501 tgtattaagg aaaagggtgt ttaatccttt ttttaattta atcctttttt ttttacacaa
     4561 aagattcaag gttcctgtca aattttgctt ttatatactc attacaaaat tccattttat
     4621 ttaatcgaaa gatataaaaa agtccatttg tcagaagagc tattttaaat aagaaggaaa
     4681 aactgtcact ctggtcgtta atctgctggg caaaatattt tcataatttt tgaaaagaat
     4741 gtaaagcagc cctttaatgt gaatattgga atgaggtatt tttccttcag aattcactgt
     4801 ctggagaatg ggatcattgt gagtgtagca taggcacaat ttgggttttg atccatttgc
     4861 ttgataagtt tcatggcctc agaaacgtga gtttttttct gtcttttggt ccccttacca
     4921 gatgtctgac tgcacttctg tgtgtggtga gggtattcat ccactgacaa gtcacatttg
     4981 tgtcaagata ttttaaactg aatttgtgcc ttattttaac atacaaaatc agcttttata
     5041 ttccatgtta aaaacaaaag caaagcccct gcatgttatt cttggaaaaa atccaaaaga
     5101 ctagtagcaa gtattcatat ttcaaaccgt taacatttta agtattcaca gtctgctctg
     5161 aaactagact tcccagtatc atggtggctg tagagagaat gaagtgacat tgaggtgagt
     5221 tctgaagtaa aagtattttt cctactatct tcacattttc tattataact aaaccaaata
     5281 tgtgtaaact ctcctgctgt ttgaattctt tttttttttt tttttttttt tacccccaag
     5341 gagcaacacc tgttctacaa cagaattgta tgaacaaatc agacctttgg ctctgaggcc
     5401 cagtctttat gtgacctcta gacaaagtca caattctccg caaatcccac tctagttttt
     5461 atccttttgc ccttgggtat tgcatccatg gtatttcagg gggatagaag agtcgtgtgt
     5521 gaatttagga gctcttgttt tgttaagtga gtctgtgtta agtggtatat tttggtggct
     5581 acctacttta gcatatttta gaaaggcacc aaaatatagc atgagtactt ttctgattaa
     5641 aaattaaaag ctcatttagg aactatttat cagctgtttg tactggtcac acacaaggta
     5701 cagtaactgt ggacataggg aaataaaaga attggcctag tccctgctgt acaggaacta
     5761 attaaaagga aaaggaattg taaatccctg ttaacagtaa taacgataat gtattttgct
     5821 tagaagttat tcagccaaga ttctatcacc aaaaaaaaaa aaggcctttt aaagctgctt
     5881 aatataaaac atgctctaag tacagaacca ttgtaccatt tctaatttga ttaactttct
     5941 ctactgttat acgaagtaca gtaatgctgc tacctaggat acctactttt aaaggccaga
     6001 ttcagaggct cttagaaact aagtgttctt gtttacctga ctgtccatca ccactctgct
     6061 ctcctatcac caggcagcga ggctctgacg aaaccatgtc cctttgcact acttagggcc
     6121 acgtcactcg aatcaggatt aactgagcat gcagacgcat gttgatggga tctcgttctg
     6181 ctgtcttcac cttgataata gcattctcta gaaacagcct cccctcacac acacacatac
     6241 acttttaagc taaaactgtc tgtgacagtg ctgttgtgag gagtttgtgc tcatatccta
     6301 ataaacagga cccaggaatg ctgatgaatt catcgtttct gaagtaaggt gaagaagtag
     6361 actgctgata aagaggacaa aactgtgact ggtctcataa ttagtagatc ttcttttcta
     6421 gaaaatctga attttcagga aaagattatt ttcatgaata aattttctaa tctgaattcc
     6481 attttgttta gcatacaata tcctgattct gggtagatat ttgtatatca gaatataaat
     6541 tgaagaatgt aaaatgagca cccaaaccta attcccccag accacttctt aatatatgaa
     6601 atgctttcta caaactgtga gtattgacgt ctttcctctg tcgagcccag gaatctgtta
     6661 gtgtctgttt cttaaatctt gtttaagagg cagagttgtt ttgagcaaat cagttaacat
     6721 tgtgatttgg tcaaggtagg gaattatgtg tatttaggaa gaagcatgtt ttattttgaa
     6781 aataatagga ttttgtgcaa tattttttct tgcataattt agttcatata aatacatctg
     6841 cttttctagc agatgcctta aggtcatgtt tttcagtatt tgtgtaaaac tgtatgtagc
     6901 aacattccat gtgattttag agaaaaaata ttctttatac cgttggcagg agaaatgttt
     6961 ttatttaaaa taattatgaa tattgcatta atatataact aactgcctca gcaacaataa
     7021 atatgcaaca agaaaattct gaaccttaga ttactattga caatactgtt actttaaaag
     7081 aaatgtgtgt agtgcaaaac gctgattctt catgtgtacg tttaacaaat agttctgtac
     7141 cacataaatc tagatggcat ttctatggtg atgacaaaac atatgtcaac tgtaatatcc
     7201 tttgtgatga atctttggta agatttataa agggcattgc caatactttt tgactgtgta
     7261 aattaagtta atttttgtat aatgtacagt ttgtttaacc ttagggcttc tgtagatttc
     7321 tacttttgtt atacttgaat gaggcagaag cactgtggaa aatctgtagc tctggatgtg
     7381 atatgcaaac ataccaaaaa aaataaaaca aggtactgaa cagcaaactt aaccagatgc
     7441 tttctatcca gaaagctatg ttttttcaaa ccatacttaa gtgaagtaat ttaaaatata
     7501 caatctttta tcttaaaaga ttgccaagtc acaaatgatt acctcttgga tatgataaat
     7561 ctctgagtct cttcgtctct gtgttacttc atgtttcgga agagagcctt gttgaggtac
     7621 attgacaaat ctgccctttg gttgattaca tgacttttag gacaggacaa aattagactc
     7681 tgcatcctaa atgcaccatg tgtgttgggt caccatcctt cacatagtct agtttccatg
     7741 tggttatttt gagaaccgtt aattatcata taccaaaaat gagatttctt gaatctgtca
     7801 tgattcagta cttagagcaa tgcctaaaac aacaaacaag tatgaactgc ctaaaaccta
     7861 cagtttaaaa tgcataaagc ttttttacac aaaaggtaca tgagaggtta aaaactgaac
     7921 tttcccaaag cttatttctc tttctttaaa tgactaacta tttggaagga ctgaaaaact
     7981 cgagcttttt gctagccacg gtgactggta tccatccaca ccttcccagc atcaagatgt
     8041 gcgtcattgt tcttgcatcc ttgaggctac aggataagag tcatctctaa agctgactac
     8101 tattgggagg actttgtaaa agtattgttt ggggaatttt aaaaaatata tgcaaaagta
     8161 aatattggat gaatcacaca ttaccataaa gtgcccaatg atgcaggttt aaaataaagt
     8221 tggtcataat caaaa
//
LOCUS       XM_032650576            8175 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 1B (DENND1B),
            transcript variant X2, mRNA.
ACCESSION   XM_032650576
VERSION     XM_032650576.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8175
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8175
                     /gene="DENND1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763105"
     CDS             93..2363
                     /gene="DENND1B"
                     /codon_start=1
                     /product="DENN domain-containing protein 1B isoform X2"
                     /protein_id="XP_032506467.1"
                     /db_xref="GeneID:116763105"
                     /translation="MDCRTKENPERTFDLVLRVKRHASEDEDPEVLWKFPEDFADQEV
                     LQTVPKFCFPFDVERVSQNQVGQHFAFVLTDIESKQRFGFCRLTSGGKICLCILSYLP
                     WFEVYYKLLNTLADYLAKELEDDLNETLKSLYNQPVPKANTPVNLSVHSYFIAPDVTG
                     LPTIPESRNLTEYFVAVDANNMLQLYASMLHERRIIITSGKLSTLTACLHGSVALLYP
                     MYWQHIYIPALPPHLLDYCCAPMPYLIGIHSSLIERVKSKSLEDVVMLNVDTNTLESP
                     FNDLSSLPSDVVSALKNKLKKQSTATGDGVARAFLRAQAALFGSYRDALRYKPGEPIT
                     FCEESFVKHRSSLMKHFLETAVNLQLFKQFIDGRLAKLNAGKGFSDVFEEEITSGGFC
                     GGNSRSYQQWVHTVKKGGALLNTAMTKATPAVRTAYKFAKNHAKQGIKEVKSKLRHKE
                     NEDDYGTCSGSVQYTPVYTLRSEKGRNLARRKLAQPRLRRTLQSLDGVLCADNDEDAE
                     RASKLSSEDGEEASAYFYESDDSLETRAQAPSSGEMDLLGEILDTLSTHSQDQGKLAA
                     ARSLDFFRSMDDIDYKPTNKSNTPSENNLALLCGGSGDQAEWHLGQDDSALHGRQLPP
                     SPRKRVASSAGTDCLSILKEENGERRLSVGAASRPAELGGPDPAPGLGLPLASPGASQ
                     TEKKETLSQTPGGPLAPSLGRHPSFVPWEKEGKGAKETSEGSGLLQEVVSLCHVTSAF
                     QQDLNISEGKTSGNQA"
     misc_feature    117..359
                     /gene="DENND1B"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    372..905
                     /gene="DENND1B"
                     /note="Domain found in a variety of signalling proteins,
                     always encircled by uDENN and dDENN; Region: DENN;
                     smart00799"
                     /db_xref="CDD:214823"
     misc_feature    999..1196
                     /gene="DENND1B"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
ORIGIN      
        1 cgcagctcca ccgccgggcc gcggccgccg ggctctgagc ggccgttccc gcggcggccg
       61 gcggggcggg gcggcccccg cgacatgcag ccatggactg caggaccaag gaaaatccag
      121 aaagaacctt tgacttggta ttgagagtga aacgtcatgc ctcagaagat gaagatccgg
      181 aggtattgtg gaagttccca gaggactttg cagaccagga agtactacag actgtgccaa
      241 agttctgttt cccctttgac gttgaaagag tgtctcagaa tcaagtcgga cagcactttg
      301 cctttgtact gacagacatt gaaagtaaac agagatttgg attctgccga ctcacatcgg
      361 gagggaaaat ctgcttatgc atccttagtt acctgccatg gtttgaagta tattacaagc
      421 ttctaaatac tctggcagac tacttggcta aggaactgga agatgatttg aatgaaactc
      481 tcaaatcact ctataaccag ccagtaccaa aggcaaacac tcctgtcaat ttgagtgtgc
      541 attcctactt cattgcccct gatgtaactg gactcccaac aataccggag agtaggaacc
      601 tcacggagta ctttgtggct gtggacgcga acaacatgct gcaactctac gccagcatgc
      661 tgcacgagag gcgcatcatc atcacctccg gcaaactcag caccttaacc gcctgtctcc
      721 atggatcggt cgccctgctc tacccgatgt actggcagca catctacatc ccagcgctcc
      781 ctcctcatct gctggactac tgctgtgccc caatgccata cctgatcgga atacactcca
      841 gcctcataga gagagtgaaa agtaaatcat tggaggatgt ggttatgttg aatgttgaca
      901 caaacacttt agaatcacca tttaatgact tgagcagcct accgagtgac gtggtctcgg
      961 ccctgaaaaa taaactgaag aagcagtcta cagctacggg ggacggagtg gctagggcct
     1021 tcctgagggc gcaggctgct ttgtttggat cctacagaga tgcactgaga tacaaacctg
     1081 gtgagcccat cacgttctgt gaggagagtt tcgtcaagca ccgctcaagt ctgatgaaac
     1141 atttcttaga aaccgcagtt aacctccagc tttttaagca gtttatcgat ggtcgactgg
     1201 caaaactaaa tgcaggaaag ggtttctctg atgtatttga agaagagatc acttcaggtg
     1261 gcttttgtgg agggaactcg aggtcatatc agcaatgggt gcatacagtc aagaagggag
     1321 gtgcactact caacacagca atgaccaaag caacccccgc tgtgcgaaca gcatataaat
     1381 ttgcaaagaa tcatgcaaag cagggaataa aggaagtgaa gagtaagctg agacacaagg
     1441 aaaatgagga cgattatggg acttgttctg gttctgtaca atatacgccc gtctacacac
     1501 tacgcagtga aaagggaaga aacctagcaa ggcgtaagct tgcccagcca cgcctaagaa
     1561 ggactcttca gagcctggat ggtgttctgt gcgctgacaa tgatgaggac gcagaaagag
     1621 ctagcaagtt gtcctctgaa gacggagaag aagcgtctgc ttatttctac gaaagtgacg
     1681 actctcttga aaccagagca caggcccctt cctcgggtga gatggacttg ctgggcgaga
     1741 tcctggacac gctgagcaca cacagccagg accaggggaa gctggcggcg gccaggagcc
     1801 tggacttctt tagatcgatg gacgacatcg attacaagcc cacgaataaa tccaacacgc
     1861 ccagtgagaa caacctggcc ctgctttgcg gtggttccgg tgaccaggcc gagtggcacc
     1921 tggggcagga cgacagtgcc ctccacggca ggcagctccc gccctcgccc aggaagcggg
     1981 tggcctccag cgcgggaacg gactgtctgt ccatcctcaa ggaggagaac ggtgagcgac
     2041 gcctcagcgt gggtgccgcg agccggcccg cggagctggg agggccggac cccgctccag
     2101 gactgggttt gccgctggct tcgcccggag cttcccaaac agagaagaaa gaaacactaa
     2161 gccagactcc gggtggtccg ctggcaccca gccttgggcg ccatccgtct tttgttcctt
     2221 gggagaaaga agggaaagga gccaaagaga cttcagaagg ttctggactg cttcaggagg
     2281 tggtgtcgtt atgccacgta acatctgcct tccagcaaga cttaaacatc tcagaaggaa
     2341 aaacaagtgg aaaccaagct taaatcaaca aatgaagagt ctgtcgcttg catccaagtt
     2401 tctacggagg cattttagga gtccctgtac cctatcataa acaaggattg gtagaaaaga
     2461 caactcttcc taccgtctaa acattgtttt tcatttggga cagttctccc actcgtctgt
     2521 ctcgcggtat atagatttat ccactgattt ttaaatgtaa agctaactct tctactctac
     2581 tcttaaatca ggtactagct tgtatgtatg ttgaaagtat atattgaaca tatgatttcc
     2641 cagtatttgg tgcttaacgc cacttatttt atttaaacga agtatgcatc taacccttgc
     2701 acataaccag tagctactgt actaacctgg ttgagcatga actggccaag gtaccaaaac
     2761 ctatcagaac tagcctgaaa ctgttgacca actaattgcc ttaatcttaa gcctatatta
     2821 agcatactta cttacataat ttatggaatt acaggtagat tttgaaagat aagttataag
     2881 tgttctgcag agcaataatg cctttttcta ttcatcaaat caaggacaaa attcattttt
     2941 tcaaagttaa aaagctctct tctggacact gcagccatgt tttccaaaag gtataaaggt
     3001 tcgcatttac cttacatgtc actcagcgaa atatatgaag tgctggatta caatgtgaaa
     3061 ttaatgactt ctgtttacaa atgacacttt tttttcacag tctttctgta tgactttgct
     3121 aaagtaggag tcacccccag gaagccaaat gtgacataaa ctgtcctgat aaaaaagtat
     3181 tcctatctgt ttttccctta actaataatt ctctaccaga atgcttcata tctcagatgg
     3241 acttcttaaa ataattgact ttatattttg gaagtttcaa atttatagaa accgtgtgga
     3301 gaaagtacag tgtccccatg tctccctact cagtttccgc tgtttttcat atcctatgat
     3361 gtcagtgcgg tacgtcttca caattcatga accatgctcc gtgcacattt ccttagtttt
     3421 cccctaccat ccttcttctg tcccagaatc ccacccaggg accacatcac acttggctgc
     3481 cacagctccg taggctcctc ttggctgtga ccctctctca gactttgctg gtttttgacg
     3541 accttgacag ttttcaagag gactgggcag atatagatat gctgtaggat gcccctctgc
     3601 tggaacttgt ctggtgtttt tctcatgatt gattgattgt aacaggaccg ttgggtttgg
     3661 gggagggggt tacagaagaa aagtgccgtc ttcatcatta catcttatca agggtccgtg
     3721 ctgtgcccgt gacttgtgaa tgttgatgtt ggccttggtc accaggctga ggtggcgttt
     3781 gtggggttcc tcccctgtaa agccgttcct tcccctgccg ctcctactgc cgtcttcagg
     3841 aggaggtcgc cgtgcgcggc ccacactgag gcttggggct cgtgcttcct ctccgtgagg
     3901 gcacggaatc cacgtaaatt acttggagtt cttctacatg ggacatcgtc tcctctctct
     3961 caaattcact gtcacgcttt gaagttcacc tgagaaggaa tcgtgcattg actgcttgat
     4021 gattggctag attgacagga ataatcagga aaaaaaccca gtgatgctgt ggttcatttg
     4081 ttgttagtat gttcagtata tatactctat acgtccccac tcatgatttt tttttacatt
     4141 atcattttag gaaaggtgtt tgagaaccca ttcaagaacc ctcatcaaga ctgtgctcta
     4201 aaatatttac tgaaatcata atttaatttt cgattaaaat cctggaaggg ggtttgttaa
     4261 aaacattgct taaaatattc attcaggtca gtctttaaat aatttaaaga aaatgaccaa
     4321 gttttacttt tctaaagtgc atttcaaaat ctcaatggat atattttggg aggacaatta
     4381 ttcattcatg tttatgaagg aaaacaagga agaccttgtt ttccatataa ggatagacta
     4441 tgtattaagg aaaagggtgt ttaatccttt ttttaattta atcctttttt ttttacacaa
     4501 aagattcaag gttcctgtca aattttgctt ttatatactc attacaaaat tccattttat
     4561 ttaatcgaaa gatataaaaa agtccatttg tcagaagagc tattttaaat aagaaggaaa
     4621 aactgtcact ctggtcgtta atctgctggg caaaatattt tcataatttt tgaaaagaat
     4681 gtaaagcagc cctttaatgt gaatattgga atgaggtatt tttccttcag aattcactgt
     4741 ctggagaatg ggatcattgt gagtgtagca taggcacaat ttgggttttg atccatttgc
     4801 ttgataagtt tcatggcctc agaaacgtga gtttttttct gtcttttggt ccccttacca
     4861 gatgtctgac tgcacttctg tgtgtggtga gggtattcat ccactgacaa gtcacatttg
     4921 tgtcaagata ttttaaactg aatttgtgcc ttattttaac atacaaaatc agcttttata
     4981 ttccatgtta aaaacaaaag caaagcccct gcatgttatt cttggaaaaa atccaaaaga
     5041 ctagtagcaa gtattcatat ttcaaaccgt taacatttta agtattcaca gtctgctctg
     5101 aaactagact tcccagtatc atggtggctg tagagagaat gaagtgacat tgaggtgagt
     5161 tctgaagtaa aagtattttt cctactatct tcacattttc tattataact aaaccaaata
     5221 tgtgtaaact ctcctgctgt ttgaattctt tttttttttt tttttttttt tacccccaag
     5281 gagcaacacc tgttctacaa cagaattgta tgaacaaatc agacctttgg ctctgaggcc
     5341 cagtctttat gtgacctcta gacaaagtca caattctccg caaatcccac tctagttttt
     5401 atccttttgc ccttgggtat tgcatccatg gtatttcagg gggatagaag agtcgtgtgt
     5461 gaatttagga gctcttgttt tgttaagtga gtctgtgtta agtggtatat tttggtggct
     5521 acctacttta gcatatttta gaaaggcacc aaaatatagc atgagtactt ttctgattaa
     5581 aaattaaaag ctcatttagg aactatttat cagctgtttg tactggtcac acacaaggta
     5641 cagtaactgt ggacataggg aaataaaaga attggcctag tccctgctgt acaggaacta
     5701 attaaaagga aaaggaattg taaatccctg ttaacagtaa taacgataat gtattttgct
     5761 tagaagttat tcagccaaga ttctatcacc aaaaaaaaaa aaggcctttt aaagctgctt
     5821 aatataaaac atgctctaag tacagaacca ttgtaccatt tctaatttga ttaactttct
     5881 ctactgttat acgaagtaca gtaatgctgc tacctaggat acctactttt aaaggccaga
     5941 ttcagaggct cttagaaact aagtgttctt gtttacctga ctgtccatca ccactctgct
     6001 ctcctatcac caggcagcga ggctctgacg aaaccatgtc cctttgcact acttagggcc
     6061 acgtcactcg aatcaggatt aactgagcat gcagacgcat gttgatggga tctcgttctg
     6121 ctgtcttcac cttgataata gcattctcta gaaacagcct cccctcacac acacacatac
     6181 acttttaagc taaaactgtc tgtgacagtg ctgttgtgag gagtttgtgc tcatatccta
     6241 ataaacagga cccaggaatg ctgatgaatt catcgtttct gaagtaaggt gaagaagtag
     6301 actgctgata aagaggacaa aactgtgact ggtctcataa ttagtagatc ttcttttcta
     6361 gaaaatctga attttcagga aaagattatt ttcatgaata aattttctaa tctgaattcc
     6421 attttgttta gcatacaata tcctgattct gggtagatat ttgtatatca gaatataaat
     6481 tgaagaatgt aaaatgagca cccaaaccta attcccccag accacttctt aatatatgaa
     6541 atgctttcta caaactgtga gtattgacgt ctttcctctg tcgagcccag gaatctgtta
     6601 gtgtctgttt cttaaatctt gtttaagagg cagagttgtt ttgagcaaat cagttaacat
     6661 tgtgatttgg tcaaggtagg gaattatgtg tatttaggaa gaagcatgtt ttattttgaa
     6721 aataatagga ttttgtgcaa tattttttct tgcataattt agttcatata aatacatctg
     6781 cttttctagc agatgcctta aggtcatgtt tttcagtatt tgtgtaaaac tgtatgtagc
     6841 aacattccat gtgattttag agaaaaaata ttctttatac cgttggcagg agaaatgttt
     6901 ttatttaaaa taattatgaa tattgcatta atatataact aactgcctca gcaacaataa
     6961 atatgcaaca agaaaattct gaaccttaga ttactattga caatactgtt actttaaaag
     7021 aaatgtgtgt agtgcaaaac gctgattctt catgtgtacg tttaacaaat agttctgtac
     7081 cacataaatc tagatggcat ttctatggtg atgacaaaac atatgtcaac tgtaatatcc
     7141 tttgtgatga atctttggta agatttataa agggcattgc caatactttt tgactgtgta
     7201 aattaagtta atttttgtat aatgtacagt ttgtttaacc ttagggcttc tgtagatttc
     7261 tacttttgtt atacttgaat gaggcagaag cactgtggaa aatctgtagc tctggatgtg
     7321 atatgcaaac ataccaaaaa aaataaaaca aggtactgaa cagcaaactt aaccagatgc
     7381 tttctatcca gaaagctatg ttttttcaaa ccatacttaa gtgaagtaat ttaaaatata
     7441 caatctttta tcttaaaaga ttgccaagtc acaaatgatt acctcttgga tatgataaat
     7501 ctctgagtct cttcgtctct gtgttacttc atgtttcgga agagagcctt gttgaggtac
     7561 attgacaaat ctgccctttg gttgattaca tgacttttag gacaggacaa aattagactc
     7621 tgcatcctaa atgcaccatg tgtgttgggt caccatcctt cacatagtct agtttccatg
     7681 tggttatttt gagaaccgtt aattatcata taccaaaaat gagatttctt gaatctgtca
     7741 tgattcagta cttagagcaa tgcctaaaac aacaaacaag tatgaactgc ctaaaaccta
     7801 cagtttaaaa tgcataaagc ttttttacac aaaaggtaca tgagaggtta aaaactgaac
     7861 tttcccaaag cttatttctc tttctttaaa tgactaacta tttggaagga ctgaaaaact
     7921 cgagcttttt gctagccacg gtgactggta tccatccaca ccttcccagc atcaagatgt
     7981 gcgtcattgt tcttgcatcc ttgaggctac aggataagag tcatctctaa agctgactac
     8041 tattgggagg actttgtaaa agtattgttt ggggaatttt aaaaaatata tgcaaaagta
     8101 aatattggat gaatcacaca ttaccataaa gtgcccaatg atgcaggttt aaaataaagt
     8161 tggtcataat caaaa
//
LOCUS       XM_032650577            5440 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 74
            (CFAP74), mRNA.
ACCESSION   XM_032650577
VERSION     XM_032650577.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5440
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5440
                     /gene="CFAP74"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 12% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763131"
     CDS             116..5440
                     /gene="CFAP74"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 74"
                     /protein_id="XP_032506468.1"
                     /db_xref="GeneID:116763131"
                     /translation="MEEDASLFPKKLLDDAPLVEDETDELEDPEFVLGSVPGEAENKA
                     DPGSSCPGKEQNADKRKQRPAVQDRMQASLLRRDLSHLDQLHEEKDLFIQKTREELRA
                     CRWRMGLLAKQQESVAAGLAAERAAGNMAAVGRLQEAFQRLCSELGNEGDLQAKMTAV
                     LHDSVWNLSVITFSVFARVSSRQRKQKRLLFARSAMWHMEIQERQLEDACKSARAEAP
                     AARKCLQERGASGKAERNRLLRVRPRPVPPSPLHACSPPAHTCDPPARPTPAQACAPA
                     HPAPAWAEWLGPRSLPDLMAASLLDTLPSSRLWPLLVACPPEAPTPPVPHGQLLLRVG
                     PVERSVYLQKEHGLRHQKLVEDAQKNHRKAVKFLKASLGRIRQQERREELESREHARR
                     RMDAVLALKSSISANRETLRKFQAWGQAKAELAEQRAQAEKELILAQGGDAFKHFCHQ
                     RRRQELETQNRAFEEEQKLRKHEIVSRILKEEAEEARRKQRPSPARPAGRPILRDQTW
                     SYVAAFHDGKGPADPPCCPPNKLLHSSPQLQEGRSALPQASLLVRAVSSESVQADRGS
                     LGQEAGTLARPEFPGLWKEDCKPYQVPKEDVGQEPMGGTKTDKDILARPAQRLRRGVT
                     HKQVASRREFRGCPFNSKPKLVHFKDFDIGKVYKKKITLTNATYTINYCKLVGVEERL
                     GDFIHIDFDPPGPMPAGMSCDVLVTFKPTVNKDLEGNVSFLAQTGRFSVPLKCSAKKC
                     SLSLDKELIDFGSYVVGETASRTITLTNLGGLGTRFRFLLASECCEVDASPSVFNTSS
                     SFTCEDKGFDSKVTTSFSEQLTAGNESVPADVPSRKESGKLDIKEKEEGRPVEEVTLT
                     TIVTVPPNEEQTEFSLGEITEGEIGPFSTIKVPVIFTPIVPGTVSTRFKVVFKNQQCP
                     TLYFKVVGVAIDVPVWVPKPNVDLKICMYDRLYQDSILIHTRSKAALTLNFEVCKGLQ
                     GHLELLPKTGCIQALSSYSVRLKFLPRRSLPEDAGEYFDKESRVLEAPMTIRVADQIK
                     PVGFTVHAIVTTSDLELSPSGVDFGYCTIYEAIRTQVSLCNHSLLPQEFGFVGLPKFV
                     DIQPNDGFGTILPLETLQLDVIFQPTKAKEYNFELVCKSEINRCFKLTCRAVGVHPLL
                     ELSHYQVKFAATSLYDTSVATLYVINSRLSMNSPTPSVPRIGLEDASPVGPTSFEFLL
                     PPDSPITISPSVGTMWPGKRCLVRVAFRPVLPSELIHQEALQALTKEAEAKSPHSWPP
                     TSHFQKDTATQRKDRLRQSFSLLRLQNQDRLFQASASQPLEVQKEGLMSSSQEYRAAQ
                     ATLTRSFQGKFDKFVVPCVVASGDTKDRKGTEPLSFSPHNAVYLELWCPAVAPSIVVT
                     SDKGRTIADFGDIAVGQRGIKKVSIQNISPERLDLEYSVLNPNGPFVLLNPIRKLVSG
                     ETQVLELSFSPRESVLAQEVLEVTTKRGTLSLALVGTGVASVTTCSIEGGVLNMGYVI
                     AGESTSTGFKLQNNSPLPIKFSMQLDSLSTGSGDEHRLPQFLASPAQRTEVVGTQNYS
                     GQSVFSVIPVEGVMEPGRAQDFTVTFSPDHESLYFSDRLQVVLFEKKISHQILLKGSA
                     RKHTMFVEGGDPLDVPVESLTVIPALDPERTEGDPQPGPPSPEAEELKPILVTLAYVQ
                     LDTDTPAPPATRELQVGCIRTTQLSAKKTVDFSLDSVASLQHKGFTIEPSKGFVERGQ
                     TKTISISWMPPIDFDPDHPLMASALLQLRGDVKETYKVLFVAQVVTGP"
     misc_feature    1331..1585
                     /gene="CFAP74"
                     /note="Ezrin/radixin/moesin, alpha-helical domain; Region:
                     ERM_helical; pfam20492"
                     /db_xref="CDD:466641"
     misc_feature    2336..>2425
                     /gene="CFAP74"
                     /note="choice-of-anchor D domain; Region: choice_anch_D;
                     NF012200"
                     /db_xref="CDD:467954"
ORIGIN      
        1 tggagctgcc cgctccaaac cgtgcagcca gccgcagccg agcagcttct ccgcccggag
       61 cgcgcgccgt tcgtaccccg gcgggtctgc tgagagctaa tttctgcctc ccaagatgga
      121 agaagatgcc agcctgttcc ctaagaagct tttggacgac gccccccttg tggaggatga
      181 aacagatgaa ctggaggatc cggagtttgt gctgggctct gtccctgggg aggctgagaa
      241 caaggcggac ccaggaagct cctgtccagg gaaagagcag aatgcagaca agaggaagca
      301 gagaccagcc gtccaggaca gaatgcaggc ctcactcctg cggagggact tgagccacct
      361 agaccagctg catgaagaga aagacctttt cattcagaaa acgagggagg agctgcgtgc
      421 ttgccgctgg aggatggggc tcctcgccaa gcagcaggag agcgtggcgg ctggcctggc
      481 tgcggagaga gccgccggca acatggcagc cgtgggtcgc ctccaggaag cgttccagcg
      541 cctgtgctca gagctgggga acgaggggga cctgcaggcg aagatgacgg ccgtgctgca
      601 tgacagcgtt tggaacctgt ctgtcattac cttcagtgtt tttgctcgcg tctcctcccg
      661 ccaacgtaaa cagaagcgcc tcctgtttgc aaggagcgcc atgtggcaca tggagatcca
      721 ggagaggcag ctggaggacg cctgcaagtc agcccgagca gaggccccgg ctgccaggaa
      781 gtgcctccag gagagggggg cctcggggaa ggcagagcgg aaccggctgc tgcgggtgcg
      841 gcccaggcct gtgcccccct ccccactcca cgcctgcagc ccccctgccc acacctgcga
      901 cccccccgcc aggcccacgc ctgcccaggc ctgcgcccct gcccacccag ccccagcctg
      961 ggcagagtgg cttgggccac gctcgctccc tgacctgatg gccgcctccc tcctggacac
     1021 cctgccctct tcccggctct ggccactcct tgtggcctgt cctcctgagg ccccgacacc
     1081 acccgtgccc cacgggcagc tgcttctgag ggtggggccg gtggagaggt ccgtgtacct
     1141 acagaaggag cacgggctca ggcaccagaa gctggtggaa gacgcccaga agaaccatcg
     1201 gaaggccgtg aagttcctga aggcctccct ggggaggatc cgccagcagg agcggagaga
     1261 ggagctggag agccgcgagc acgcgcgcag gcgcatggac gccgtgctgg ccctgaagag
     1321 cagcatctcc gccaaccggg agacactccg gaaatttcaa gcatggggcc aggccaaggc
     1381 agagctggcg gaacagaggg cccaggccga gaaggagctg attctggccc aaggtgggga
     1441 cgctttcaag cacttttgcc atcaacgccg gcgccaggag ctggagaccc agaaccgcgc
     1501 cttcgaggag gagcagaagc tcaggaagca cgagattgtg agtcggatct tgaaggagga
     1561 ggccgaggag gccaggagga agcagcggcc ctcgcccgcc agacccgcgg gccggccgat
     1621 cctgagggac cagacctgga gctacgtggc cgctttccat gacgggaagg gcccggcgga
     1681 cccgccctgc tgccccccga acaagctgtt gcattcctct ccccaactcc aggagggcag
     1741 gtctgcgtta ccccaagcct ctctgctggt gagagccgtg tccagcgagt ccgtccaggc
     1801 ggacaggggg agccttggcc aggaggcggg gacgctggct cggccggagt tccctgggct
     1861 ctggaaggag gactgcaagc cgtaccaggt gcccaaggag gacgtgggcc aggagcccat
     1921 gggcggaacg aagacggaca aggacatcct ggcgcgccct gcgcagcggc tgcgccgcgg
     1981 ggtgacccac aagcaggtgg catccaggcg cgagttccga gggtgtccct tcaacagcaa
     2041 gcccaagctc gtccacttca aggactttga tatcggcaaa gtgtacaaga aaaagatcac
     2101 gctgactaac gccacctaca cgattaacta ctgcaagctg gtgggcgtgg aggagcgcct
     2161 cggggacttc atccacatcg actttgaccc ccctggtccc atgccagccg gcatgtcctg
     2221 tgacgtgctt gttaccttca agcccacggt aaacaaagat ctggaaggaa acgtctcgtt
     2281 tctggctcag acgggcaggt tttccgttcc actgaaatgt tcagcgaaga aatgctccct
     2341 gtccctcgac aaggagctca tcgacttcgg cagctatgtg gtgggtgaga ctgcatcccg
     2401 gaccatcacg ctgaccaacc tcgggggctt gggcaccagg ttcaggtttc tcctggcatc
     2461 ggagtgctgt gaggtggatg cgtccccgtc ggtcttcaac acaagcagta gctttacatg
     2521 tgaagacaaa ggttttgaca gtaaagtcac caccagtttt tccgagcagc tgacggcggg
     2581 caatgagtct gtgcccgcag atgtgccgag ccggaaggag tctggaaaac tggacataaa
     2641 ggagaaggag gaggggcgcc ccgtagagga agtgaccttg accaccatcg tgactgtacc
     2701 tcccaacgag gaacagacgg agttctcact gggagagata acagaggggg agattggccc
     2761 cttcagcacc atcaaagtgc ccgtcatctt caccccgatt gtcccgggaa cggtctccac
     2821 caggttcaag gtcgtgttta agaatcagca gtgcccgacc ttatatttca aagtcgtcgg
     2881 tgttgctatc gacgtgccag tctgggtgcc aaagcccaac gtagacctga agatctgcat
     2941 gtacgaccgg ctgtatcagg actccatcct catccacaca cggtcaaagg cggccctgac
     3001 cctgaacttc gaggtgtgca aggggctgca gggccacctg gagctcctgc ccaagaccgg
     3061 ctgcatccag gccctgtcgt cctactcggt gcggctcaag ttcctgccca gacgctccct
     3121 cccagaagat gccggggagt attttgacaa ggaaagcaga gtcctggagg ccccgatgac
     3181 tatccgggtg gctgaccaga tcaaacccgt ggggtttact gtccacgcca tagtcaccac
     3241 ctcggacctg gagctcagcc cctcgggggt ggacttcggc tactgcacca tctacgaggc
     3301 catcaggacc caagtcagcc tctgcaacca ctccctcctg ccccaggagt ttggcttcgt
     3361 cgggctcccc aagtttgtgg acatccagcc caacgatggg ttcgggacaa tcctgccgct
     3421 ggaaactctg caactcgacg taatctttca gcccaccaag gccaaggagt acaacttcga
     3481 gctcgtctgc aagtcagaga ttaaccggtg cttcaagctg acgtgccggg ctgtgggtgt
     3541 ccacccgctc ctggagctgt cccactacca ggtcaagttt gcggccacct ccttgtacga
     3601 cacgtcggtg gccaccctgt acgtcatcaa ctcccgcctg agcatgaact cgccgacgcc
     3661 ctcggtaccc cgcatcggct tggaggacgc atcccctgtg gggcccacat ctttcgagtt
     3721 cctgctgccc ccagactccc ccatcaccat ctcaccctcg gtgggcacca tgtggccagg
     3781 aaagaggtgc ctggtccggg tggccttccg gcccgtgctg cccagcgagc tgatccacca
     3841 ggaagcctta caggccctga ccaaagaagc tgaggccaaa tcgccccaca gttggcctcc
     3901 cacctcgcac ttccaaaagg acacggccac ccagaggaag gaccggctga gacagtcctt
     3961 ctccctactg cggctgcaga accaagaccg gctgttccag gcctctgcct cccagcccct
     4021 ggaggtgcag aaagagggcc tcatgtccag ctcccaggag taccgggctg cgcaggccac
     4081 cctgaccaga tctttccagg ggaagtttga caagtttgtg gtcccctgtg ttgttgccag
     4141 tggtgacacc aaagacagga aggggacgga acccctgagc ttcagtcccc acaacgccgt
     4201 gtacctggag ctgtggtgtc cagcggtagc accatccatc gtggtgacgt ccgacaaagg
     4261 caggaccatc gctgacttcg gcgacatcgc tgtgggacaa cgcggcataa agaaggtctc
     4321 catccagaac atctcgcccg agcgtctcga cctggagtac tccgtgctga accccaacgg
     4381 cccctttgtc ctgctgaatc ccatccgcaa gctggtgtct ggagagaccc aggtcctgga
     4441 gctgtccttc tccccccgtg aaagcgtcct ggcccaggaa gtgctggagg tcaccaccaa
     4501 gagaggcacg ctctccctgg ccctcgtggg cacaggtgtg gcgtccgtga ccacgtgctc
     4561 cattgaagga ggcgtcctca acatgggcta cgtgatcgcc ggagaatcca cctccacggg
     4621 cttcaagctg caaaacaatt ccccgctgcc catcaagttc tccatgcagt tggacagcct
     4681 ctccaccggg agcggagacg agcaccggct gccgcagttc ctggcctccc cggcccagag
     4741 gacggaagtc gtgggcacgc agaactacag cggccagagc gtgttcagcg tgatcccggt
     4801 ggagggcgtc atggagccgg gcagggcgca ggacttcacc gtgaccttca gcccggacca
     4861 tgagagcctg tacttctctg accggcttca ggtcgtgctc ttcgaaaaga aaatctccca
     4921 ccagatcctc ctgaagggct cggcccgcaa gcacacgatg tttgtggaag gcggagaccc
     4981 cctggatgtg cctgtggagt ccctgaccgt gatccctgcc ttggaccccg agcgcacaga
     5041 gggtgacccc cagccaggcc ctccctctcc agaagctgag gagctgaagc ccatcctggt
     5101 aaccctggcc tatgtccagt tggacacgga cacgccggcc ccacctgcca cccgagaact
     5161 gcaggtgggc tgcatccgga ccacccagct gtccgcaaag aagactgtcg acttcagcct
     5221 ggacagcgtc gcgtccctgc agcacaaggg cttcaccatc gagccctcca agggctttgt
     5281 ggagcgcggc cagaccaaga ccatcagcat ctcctggatg ccacccatcg actttgatcc
     5341 ggaccaccca ctcatggcgt cagccctgct gcagctcagg ggggacgtga aggagaccta
     5401 caaggtcctc tttgtagcgc aggtggtgac gggcccctga
//
LOCUS       XM_032650578            1584 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin 6 (SYT6), transcript
            variant X1, mRNA.
ACCESSION   XM_032650578
VERSION     XM_032650578.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1584
                     /gene="SYT6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 23% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763147"
     CDS             1..1584
                     /gene="SYT6"
                     /codon_start=1
                     /product="synaptotagmin-6 isoform X1"
                     /protein_id="XP_032506469.1"
                     /db_xref="GeneID:116763147"
                     /translation="MSGVWETGEPRCQAALAVLASLCRARPPPLGLDVETCRSFELEP
                     PELSPSAADAGTSVSLLTVVAIVCGVALVAVFLFLFWKLCWMPWRNKEASSPSSANPS
                     PEALQSPSSRGNMADKLKDPNTLGFLEAAVKISHTSPDIPAEVQRSVKEHIMRHTRLQ
                     RQTTEPASSTRHTSFKRHLPRQMHVSSVDYGNELPPAAEQPTSIGRIKPELYKQKSVE
                     GDDAKTEAKTCGKINFSLRYDYENETLIVRILKAFDLPAKDFCGSSDPYVKIYLLPDR
                     KCKLQTRVHRKTLNPTFDENFHFPVPYEELADRKLHLSVFDFDRFSRHDMIGEVILDN
                     LFEASDLSQETSIWKDIQYATSESVDLGEIMFSLCYLPTAGRLTLTVIKCRNLKAMDI
                     TGYSDPYVKVSLLCDGRRLKKKKTTIKKNTLNPVYNEAIIFDIPPENMDQVSLLISVM
                     DYDRVGHNEIIGVCRVGISAEGLGRDHWNEMLAYPRKPIAHWHSLVEVKKSFREWQGR
                     AASFDSESSCPSPRPPPTP"
     misc_feature    682..1059
                     /gene="SYT6"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; Region: C2A_Synaptotagmin-1-5-6-9-10;
                     cd08385"
                     /db_xref="CDD:176031"
     misc_feature    order(775..777,793..795,949..951,955..957,973..975)
                     /gene="SYT6"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176031"
     misc_feature    1084..1485
                     /gene="SYT6"
                     /note="C2 domain second repeat present in Synaptotagmins
                     3, 5, 6, 9, and 10; Region: C2B_Synaptotagmin-3-5-6-9-10;
                     cd08403"
                     /db_xref="CDD:176048"
     misc_feature    order(1171..1173,1189..1191,1261..1263,1351..1353,
                     1357..1359,1375..1377)
                     /gene="SYT6"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176048"
ORIGIN      
        1 atgagcgggg tgtgggagac cggggagcct cggtgccagg cggcgctcgc ggtcctggcc
       61 tcgctgtgcc gggctcggcc gccccctctc gggctggacg tggagacttg tcggagcttc
      121 gagctagagc ccccagagct gagtccgagc gctgccgacg caggcacctc tgtcagcctc
      181 ctcacagtgg tagctattgt gtgtggcgtg gccctggtgg cagtttttct ctttctcttt
      241 tggaagctgt gctggatgcc ctggaggaac aaggaggcct ccagcccctc ctctgctaac
      301 ccctccccgg aggccctcca gagccccagc tccagaggca acatggcgga caagctgaaa
      361 gaccccaaca ccctgggctt cctggaggca gctgtgaaga tcagccacac gtccccagat
      421 atccctgccg aggtgcagag gtcggtcaaa gagcacatca tgcgtcacac acggctgcag
      481 cgacagacca cagagccagc gtcatccacc aggcacacgt ccttcaagcg ccacctgcca
      541 cggcagatgc acgtctccag cgtggactac ggcaatgagc tgccccctgc ggcggagcag
      601 cccaccagca ttggccgcat caagcccgag ctctacaagc agaagtcagt ggagggggac
      661 gatgccaaaa ccgaggccaa gacctgcggg aagatcaact tcagcctgcg ctacgactac
      721 gagaacgaga ccttgatcgt gcgcatcctg aaggccttcg acctccccgc caaggacttt
      781 tgtggcagct ctgaccctta cgtcaagatc tacctcttgc ctgatcgcaa atgcaagctg
      841 cagacacggg tgcaccgcaa gaccctgaac cccaccttcg atgagaactt tcacttcccc
      901 gtgccctatg aggagctggc tgaccgcaag ctgcatctca gtgtcttcga ctttgaccgc
      961 ttctcccgcc atgacatgat cggggaggtc atcctggaca acctctttga ggcctctgac
     1021 ctgtcccagg aaacctccat ctggaaggac atccagtacg caaccagtga aagcgtggat
     1081 ttgggagaga tcatgttctc cctctgctac ctgcccacag caggcaggct caccctcact
     1141 gtgatcaaat gtcggaacct caaggcgatg gacatcacag gctactcaga tccatacgtc
     1201 aaagtgtccc tgctttgtga tgggcggaga ctgaagaaga agaaaaccac cataaagaag
     1261 aacaccctca accccgtcta caatgaggcc atcatctttg acattccccc ggagaatatg
     1321 gatcaagtca gtctgctcat ctcggttatg gattatgatc gagtgggcca caacgagatc
     1381 ataggagtct gtcgtgtggg gatcagtgcc gaaggcctgg gcagggacca ctggaacgag
     1441 atgctggcat acccgcggaa gcccattgca cactggcact ccttggtgga ggtaaagaaa
     1501 tccttcagag agtggcaggg ccgagccgcc agcttcgaca gcgagagctc gtgcccgtct
     1561 ccgagaccac ctccgacacc ctga
//
LOCUS       XM_032650579            1530 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin 6 (SYT6), transcript
            variant X2, mRNA.
ACCESSION   XM_032650579
VERSION     XM_032650579.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1530
                     /gene="SYT6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins, and 24% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763147"
     CDS             1..1530
                     /gene="SYT6"
                     /codon_start=1
                     /product="synaptotagmin-6 isoform X2"
                     /protein_id="XP_032506470.1"
                     /db_xref="GeneID:116763147"
                     /translation="MSGVWETGEPRCQAALAVLASLCRARPPPLGLDVETCRSFELEP
                     PELSPSAADAGTSVSLLTVVAIVCGVALVAVFLFLFWKLCWMPWRNKEASSPSSANPS
                     PEALQSPSSRGNMADKLKDPNTLGFLEAAVKISHTSPDIPAEVQRSVKEHIMRHTRLQ
                     RQTTEPASSTRHTSFKRHLPRQMHVSSVDYGNELPPAAEQPTSIGRIKPELYKQKSVE
                     GDDAKTEAKTCGKINFSLRYDYENETLIVRILKAFDLPAKDFCGSSDPYVKIYLLPDR
                     KCKLQTRVHRKTLNPTFDENFHFPVPYEELADRKLHLSVFDFDRFSRHDMIGEVILDN
                     LFEASDLSQETSIWKDIQYATSESVDLGEIMFSLCYLPTAGRLTLTVIKCRNLKAMDI
                     TGYSDPYVKVSLLCDGRRLKKKKTTIKKNTLNPVYNEAIIFDIPPENMDQVSLLISVM
                     DYDRVGHNEIIGVCRVGISAEGLGRDHWNEMLAYPRKPIAHWHSLVEVKKSFREGNPR
                     L"
     misc_feature    682..1059
                     /gene="SYT6"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; Region: C2A_Synaptotagmin-1-5-6-9-10;
                     cd08385"
                     /db_xref="CDD:176031"
     misc_feature    order(775..777,793..795,949..951,955..957,973..975)
                     /gene="SYT6"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176031"
     misc_feature    1084..1485
                     /gene="SYT6"
                     /note="C2 domain second repeat present in Synaptotagmins
                     3, 5, 6, 9, and 10; Region: C2B_Synaptotagmin-3-5-6-9-10;
                     cd08403"
                     /db_xref="CDD:176048"
     misc_feature    order(1171..1173,1189..1191,1261..1263,1351..1353,
                     1357..1359,1375..1377)
                     /gene="SYT6"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176048"
ORIGIN      
        1 atgagcgggg tgtgggagac cggggagcct cggtgccagg cggcgctcgc ggtcctggcc
       61 tcgctgtgcc gggctcggcc gccccctctc gggctggacg tggagacttg tcggagcttc
      121 gagctagagc ccccagagct gagtccgagc gctgccgacg caggcacctc tgtcagcctc
      181 ctcacagtgg tagctattgt gtgtggcgtg gccctggtgg cagtttttct ctttctcttt
      241 tggaagctgt gctggatgcc ctggaggaac aaggaggcct ccagcccctc ctctgctaac
      301 ccctccccgg aggccctcca gagccccagc tccagaggca acatggcgga caagctgaaa
      361 gaccccaaca ccctgggctt cctggaggca gctgtgaaga tcagccacac gtccccagat
      421 atccctgccg aggtgcagag gtcggtcaaa gagcacatca tgcgtcacac acggctgcag
      481 cgacagacca cagagccagc gtcatccacc aggcacacgt ccttcaagcg ccacctgcca
      541 cggcagatgc acgtctccag cgtggactac ggcaatgagc tgccccctgc ggcggagcag
      601 cccaccagca ttggccgcat caagcccgag ctctacaagc agaagtcagt ggagggggac
      661 gatgccaaaa ccgaggccaa gacctgcggg aagatcaact tcagcctgcg ctacgactac
      721 gagaacgaga ccttgatcgt gcgcatcctg aaggccttcg acctccccgc caaggacttt
      781 tgtggcagct ctgaccctta cgtcaagatc tacctcttgc ctgatcgcaa atgcaagctg
      841 cagacacggg tgcaccgcaa gaccctgaac cccaccttcg atgagaactt tcacttcccc
      901 gtgccctatg aggagctggc tgaccgcaag ctgcatctca gtgtcttcga ctttgaccgc
      961 ttctcccgcc atgacatgat cggggaggtc atcctggaca acctctttga ggcctctgac
     1021 ctgtcccagg aaacctccat ctggaaggac atccagtacg caaccagtga aagcgtggat
     1081 ttgggagaga tcatgttctc cctctgctac ctgcccacag caggcaggct caccctcact
     1141 gtgatcaaat gtcggaacct caaggcgatg gacatcacag gctactcaga tccatacgtc
     1201 aaagtgtccc tgctttgtga tgggcggaga ctgaagaaga agaaaaccac cataaagaag
     1261 aacaccctca accccgtcta caatgaggcc atcatctttg acattccccc ggagaatatg
     1321 gatcaagtca gtctgctcat ctcggttatg gattatgatc gagtgggcca caacgagatc
     1381 ataggagtct gtcgtgtggg gatcagtgcc gaaggcctgg gcagggacca ctggaacgag
     1441 atgctggcat acccgcggaa gcccattgca cactggcact ccttggtgga ggtaaagaaa
     1501 tccttcagag agggaaaccc tcggttgtga
//
LOCUS       XM_032650580            1509 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin 6 (SYT6), transcript
            variant X3, mRNA.
ACCESSION   XM_032650580
VERSION     XM_032650580.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1509
                     /gene="SYT6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 24% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763147"
     CDS             1..1509
                     /gene="SYT6"
                     /codon_start=1
                     /product="synaptotagmin-6 isoform X3"
                     /protein_id="XP_032506471.1"
                     /db_xref="GeneID:116763147"
                     /translation="MSGVWETGEPRCQAALAVLASLCRARPPPLGLDVETCRSFELEP
                     PELSPSAADAGTSVSLLTVVAIVCGVALVAVFLFLFWKLCWMPWRNKEASSPSSANPS
                     PEALQSPSSRGNMADKLKDPNTLGFLEAAVKISHTSPDIPAEVQRSVKEHIMRHTRLQ
                     RQTTEPASSTRHTSFKRHLPRQMHVSSVDYGNELPPAAEQPTSIGRIKPELYKQKSVE
                     GDDAKTEAKTCGKINFSLRYDYENETLIVRILKAFDLPAKDFCGSSDPYVKIYLLPDR
                     KCKLQTRVHRKTLNPTFDENFHFPVPYEELADRKLHLSVFDFDRFSRHDMIGEVILDN
                     LFEASDLSQETSIWKDIQYATSESVDLGEIMFSLCYLPTAGRLTLTVIKCRNLKAMDI
                     TGYSDPYVKVSLLCDGRRLKKKKTTIKKNTLNPVYNEAIIFDIPPENMDQVSLLISVM
                     DYDRVGHNEIIGVCRVGISAEGLGRDHWNEMLAYPRKPIAHWHSLVEGNPRL"
     misc_feature    682..1059
                     /gene="SYT6"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; Region: C2A_Synaptotagmin-1-5-6-9-10;
                     cd08385"
                     /db_xref="CDD:176031"
     misc_feature    order(775..777,793..795,949..951,955..957,973..975)
                     /gene="SYT6"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176031"
     misc_feature    1084..1485
                     /gene="SYT6"
                     /note="C2 domain second repeat present in Synaptotagmins
                     3, 5, 6, 9, and 10; Region: C2B_Synaptotagmin-3-5-6-9-10;
                     cd08403"
                     /db_xref="CDD:176048"
     misc_feature    order(1171..1173,1189..1191,1261..1263,1351..1353,
                     1357..1359,1375..1377)
                     /gene="SYT6"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176048"
ORIGIN      
        1 atgagcgggg tgtgggagac cggggagcct cggtgccagg cggcgctcgc ggtcctggcc
       61 tcgctgtgcc gggctcggcc gccccctctc gggctggacg tggagacttg tcggagcttc
      121 gagctagagc ccccagagct gagtccgagc gctgccgacg caggcacctc tgtcagcctc
      181 ctcacagtgg tagctattgt gtgtggcgtg gccctggtgg cagtttttct ctttctcttt
      241 tggaagctgt gctggatgcc ctggaggaac aaggaggcct ccagcccctc ctctgctaac
      301 ccctccccgg aggccctcca gagccccagc tccagaggca acatggcgga caagctgaaa
      361 gaccccaaca ccctgggctt cctggaggca gctgtgaaga tcagccacac gtccccagat
      421 atccctgccg aggtgcagag gtcggtcaaa gagcacatca tgcgtcacac acggctgcag
      481 cgacagacca cagagccagc gtcatccacc aggcacacgt ccttcaagcg ccacctgcca
      541 cggcagatgc acgtctccag cgtggactac ggcaatgagc tgccccctgc ggcggagcag
      601 cccaccagca ttggccgcat caagcccgag ctctacaagc agaagtcagt ggagggggac
      661 gatgccaaaa ccgaggccaa gacctgcggg aagatcaact tcagcctgcg ctacgactac
      721 gagaacgaga ccttgatcgt gcgcatcctg aaggccttcg acctccccgc caaggacttt
      781 tgtggcagct ctgaccctta cgtcaagatc tacctcttgc ctgatcgcaa atgcaagctg
      841 cagacacggg tgcaccgcaa gaccctgaac cccaccttcg atgagaactt tcacttcccc
      901 gtgccctatg aggagctggc tgaccgcaag ctgcatctca gtgtcttcga ctttgaccgc
      961 ttctcccgcc atgacatgat cggggaggtc atcctggaca acctctttga ggcctctgac
     1021 ctgtcccagg aaacctccat ctggaaggac atccagtacg caaccagtga aagcgtggat
     1081 ttgggagaga tcatgttctc cctctgctac ctgcccacag caggcaggct caccctcact
     1141 gtgatcaaat gtcggaacct caaggcgatg gacatcacag gctactcaga tccatacgtc
     1201 aaagtgtccc tgctttgtga tgggcggaga ctgaagaaga agaaaaccac cataaagaag
     1261 aacaccctca accccgtcta caatgaggcc atcatctttg acattccccc ggagaatatg
     1321 gatcaagtca gtctgctcat ctcggttatg gattatgatc gagtgggcca caacgagatc
     1381 ataggagtct gtcgtgtggg gatcagtgcc gaaggcctgg gcagggacca ctggaacgag
     1441 atgctggcat acccgcggaa gcccattgca cactggcact ccttggtgga gggaaaccct
     1501 cggttgtga
//
LOCUS       XM_032650586            1323 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin 6 (SYT6), transcript
            variant X4, mRNA.
ACCESSION   XM_032650586
VERSION     XM_032650586.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1323
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1323
                     /gene="SYT6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 27% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763147"
     CDS             16..1323
                     /gene="SYT6"
                     /codon_start=1
                     /product="synaptotagmin-6 isoform X4"
                     /protein_id="XP_032506477.1"
                     /db_xref="GeneID:116763147"
                     /translation="MPWRNKEASSPSSANPSPEALQSPSSRGNMADKLKDPNTLGFLE
                     AAVKISHTSPDIPAEVQRSVKEHIMRHTRLQRQTTEPASSTRHTSFKRHLPRQMHVSS
                     VDYGNELPPAAEQPTSIGRIKPELYKQKSVEGDDAKTEAKTCGKINFSLRYDYENETL
                     IVRILKAFDLPAKDFCGSSDPYVKIYLLPDRKCKLQTRVHRKTLNPTFDENFHFPVPY
                     EELADRKLHLSVFDFDRFSRHDMIGEVILDNLFEASDLSQETSIWKDIQYATSESVDL
                     GEIMFSLCYLPTAGRLTLTVIKCRNLKAMDITGYSDPYVKVSLLCDGRRLKKKKTTIK
                     KNTLNPVYNEAIIFDIPPENMDQVSLLISVMDYDRVGHNEIIGVCRVGISAEGLGRDH
                     WNEMLAYPRKPIAHWHSLVEWQGRAASFDSESSCPSPRPPPTP"
     misc_feature    442..819
                     /gene="SYT6"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; Region: C2A_Synaptotagmin-1-5-6-9-10;
                     cd08385"
                     /db_xref="CDD:176031"
     misc_feature    order(535..537,553..555,709..711,715..717,733..735)
                     /gene="SYT6"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176031"
     misc_feature    844..1245
                     /gene="SYT6"
                     /note="C2 domain second repeat present in Synaptotagmins
                     3, 5, 6, 9, and 10; Region: C2B_Synaptotagmin-3-5-6-9-10;
                     cd08403"
                     /db_xref="CDD:176048"
     misc_feature    order(931..933,949..951,1021..1023,1111..1113,1117..1119,
                     1135..1137)
                     /gene="SYT6"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176048"
ORIGIN      
        1 tggaagctgt gctggatgcc ctggaggaac aaggaggcct ccagcccctc ctctgctaac
       61 ccctccccgg aggccctcca gagccccagc tccagaggca acatggcgga caagctgaaa
      121 gaccccaaca ccctgggctt cctggaggca gctgtgaaga tcagccacac gtccccagat
      181 atccctgccg aggtgcagag gtcggtcaaa gagcacatca tgcgtcacac acggctgcag
      241 cgacagacca cagagccagc gtcatccacc aggcacacgt ccttcaagcg ccacctgcca
      301 cggcagatgc acgtctccag cgtggactac ggcaatgagc tgccccctgc ggcggagcag
      361 cccaccagca ttggccgcat caagcccgag ctctacaagc agaagtcagt ggagggggac
      421 gatgccaaaa ccgaggccaa gacctgcggg aagatcaact tcagcctgcg ctacgactac
      481 gagaacgaga ccttgatcgt gcgcatcctg aaggccttcg acctccccgc caaggacttt
      541 tgtggcagct ctgaccctta cgtcaagatc tacctcttgc ctgatcgcaa atgcaagctg
      601 cagacacggg tgcaccgcaa gaccctgaac cccaccttcg atgagaactt tcacttcccc
      661 gtgccctatg aggagctggc tgaccgcaag ctgcatctca gtgtcttcga ctttgaccgc
      721 ttctcccgcc atgacatgat cggggaggtc atcctggaca acctctttga ggcctctgac
      781 ctgtcccagg aaacctccat ctggaaggac atccagtacg caaccagtga aagcgtggat
      841 ttgggagaga tcatgttctc cctctgctac ctgcccacag caggcaggct caccctcact
      901 gtgatcaaat gtcggaacct caaggcgatg gacatcacag gctactcaga tccatacgtc
      961 aaagtgtccc tgctttgtga tgggcggaga ctgaagaaga agaaaaccac cataaagaag
     1021 aacaccctca accccgtcta caatgaggcc atcatctttg acattccccc ggagaatatg
     1081 gatcaagtca gtctgctcat ctcggttatg gattatgatc gagtgggcca caacgagatc
     1141 ataggagtct gtcgtgtggg gatcagtgcc gaaggcctgg gcagggacca ctggaacgag
     1201 atgctggcat acccgcggaa gcccattgca cactggcact ccttggtgga gtggcagggc
     1261 cgagccgcca gcttcgacag cgagagctcg tgcccgtctc cgagaccacc tccgacaccc
     1321 tga
//
LOCUS       XM_032650596            1875 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus complement C8 alpha chain (C8A), mRNA.
ACCESSION   XM_032650596
VERSION     XM_032650596.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1875
                     /gene="C8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins"
                     /db_xref="GeneID:116763182"
     CDS             106..1875
                     /gene="C8A"
                     /codon_start=1
                     /product="complement component C8 alpha chain"
                     /protein_id="XP_032506487.1"
                     /db_xref="GeneID:116763182"
                     /translation="MFAVAFFLLSLMTCQPGVAIQEKVNWRVSRAVQSSTPTAVSCQL
                     GNWGEWTDCFPCQEKKYRYRSLLQPNKFGGTICSGTVWDQASCHSPTACVKQAQCGQD
                     FQCKETGRCLKRHLVCNGDNDCLDGSDEDNCEDIRVLEDDCSQYDPIPGSERVASGYN
                     VLTQKQAQSVYDVRYYGGQCETVYNGEWRELRYDPTCERLYYGDDEKYFRKPYNFLKY
                     HFEALADTTVSSESYDDANDLYSKVKNDESVSAGVTIGVGVAVSPFTVTAGVSGSRGS
                     SVLNMLRKYNQKIYSFMRIFTKVQTAHFKMRRENIMLDEVMLQSLLELPEQYDYGMYA
                     KFIDDYGTHYITSGTMGGIFEYILVLNKERMETAGLSSNDVKTCFGGSFGIDHEYTDT
                     TQIGGRLSGEACKKFGGGKIGKYLKTVGVEDIISLVQGGSSGWAGGLTQHRSIITYRS
                     WGRSLKYNPVVIDFELQPIHEILRHTNLGPLETKRQNLRRALDQYLMEFNACRCGPCF
                     NNGKPILDGTSCTCQCPLGRHGLACEQMESEGEKADGHWGCWSSWSGCNSGTRERRRE
                     CNNPAPQNGGTSCPGHRVQTQAC"
     misc_feature    400..504
                     /gene="C8A"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; Region:
                     LDLa; cd00112"
                     /db_xref="CDD:238060"
     misc_feature    order(412..414,439..441,472..477)
                     /gene="C8A"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     misc_feature    order(451..453,460..462,472..474,490..495)
                     /gene="C8A"
                     /note="calcium-binding site [ion binding]; other site"
                     /db_xref="CDD:238060"
     misc_feature    481..495
                     /gene="C8A"
                     /note="D-X-S-D-E motif; other site"
                     /db_xref="CDD:238060"
     misc_feature    979..1596
                     /gene="C8A"
                     /note="membrane-attack complex / perforin; Region: MACPF;
                     smart00457"
                     /db_xref="CDD:214671"
     misc_feature    1744..1872
                     /gene="C8A"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
ORIGIN      
        1 attaggtaga tcttataggt cccagcccct agatttcttt tactccaact ccccgaatag
       61 ttttatttct ctctaggtga tatagggagg tggcttctgg atgagatgtt tgctgttgct
      121 tttttcctct tgtctttgat gacttgtcag cctggggtag ccatacagga gaaggtgaac
      181 tggagagtca gtcgggctgt tcagagttct actcccacag ctgtttcctg ccagctgggc
      241 aactggggag agtggacaga ttgctttcca tgccaggaga aaaagtacag ataccggagc
      301 ctcctgcagc ctaacaagtt cgggggaacc atctgcagtg ggactgtctg ggaccaagcc
      361 agctgtcaca gtcccacagc ttgtgtgaag caagcacagt gtggacagga tttccagtgt
      421 aaggagacag gtcgctgcct gaaacgccac ctggtgtgta atggagacaa tgactgcctg
      481 gatggctctg atgaggacaa ctgtgaagac atcagggtct tggaagatga ctgcagccag
      541 tatgacccaa ttccaggatc agagagggtg gcctcggggt ataatgttct gacccagaaa
      601 caagctcaga gcgtatacga tgtcaggtat tatgggggcc agtgtgagac cgtatacaac
      661 ggggaatgga gagagcttcg gtatgacccc acctgtgagc gtctctacta tggagatgat
      721 gagaagtact tccggaaacc ctacaatttc ctgaagtacc actttgaggc cctggcggat
      781 actacagtct cctcagagtc ctacgatgat gcaaatgacc tttattctaa agtgaaaaat
      841 gacgagtctg tgtcggctgg agtgaccatt ggtgtgggcg ttgcagtcag cccatttact
      901 gtgactgcag gtgtatctgg gtcacgaggc agttcggtct tgaatatgtt acgcaagtat
      961 aatcagaaga tatatagctt catgagaatt ttcacaaagg tgcagactgc tcattttaag
     1021 atgaggaggg agaatatcat gttggatgaa gttatgctgc agtcattact ggaacttcca
     1081 gagcagtacg attacggcat gtacgccaag ttcatcgatg actacggcac ccattacata
     1141 acgtctggaa cgatgggcgg catttttgaa tatatcctgg tgcttaacaa agaaagaatg
     1201 gaaacagctg gtttgtccag caatgatgtc aagacatgct ttggaggctc ttttggcatc
     1261 gaccatgagt acacagatac aacacaaatt ggaggacgtt tatcaggaga agcttgtaaa
     1321 aaatttggag gtggcaaaat aggcaagtat ttaaagacag tgggtgtgga agacatcatt
     1381 tctctggtgc aaggtggcag ctctggctgg gcaggtggct tgacacaaca caggagcatc
     1441 attacatacc gttcctgggg gaggtcatta aagtataacc ctgttgttat tgattttgag
     1501 ttgcagccca tccatgagat actgaggcac acgaacctgg ggcctctgga gaccaagcgt
     1561 cagaacctgc ggcgagcctt ggaccagtac ctgatggaat tcaatgcctg ccgctgtggg
     1621 ccctgcttta acaatgggaa gcccatcctc gatggtacca gctgcacatg tcagtgcccc
     1681 ctgggtcgcc atggccttgc ctgtgagcaa atggagtcag agggagaaaa ggcggatggt
     1741 cactggggct gctggagctc atggtctggt tgcaactcgg gcacccggga aaggaggaga
     1801 gagtgtaaca atcctgcacc ccagaacgga ggtacctcat gtccgggcca cagagtgcaa
     1861 acccaggcat gctga
//
LOCUS       XR_004352444             209 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763187
            (LOC116763187), ncRNA.
ACCESSION   XR_004352444
VERSION     XR_004352444.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..209
                     /gene="LOC116763187"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116763187"
     ncRNA           1..209
                     /ncRNA_class="lncRNA"
                     /gene="LOC116763187"
                     /product="uncharacterized LOC116763187"
                     /db_xref="GeneID:116763187"
ORIGIN      
        1 gtgtttgtgc caataccatg ctggtttgat tattgtagct ttgtagtatt atctaaagtc
       61 tgggagggtt attcctcctg cttcgttctt ttgtcctcag catttctttg gcaactctgg
      121 gtcttttatg gatccatata cattttagga ttatttgttc cagttctgtg aaaaatgtca
      181 aggttttttt gatagaggtt ggattaaat
//
LOCUS       XM_032650618             868 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus keratin-associated protein 3-3-like
            (LOC116763192), mRNA.
ACCESSION   XM_032650618
VERSION     XM_032650618.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..868
                     /gene="LOC116763192"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763192"
     CDS             48..383
                     /gene="LOC116763192"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:207..209,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: keratin-associated protein
                     3-3-like"
                     /protein_id="XP_032506509.1"
                     /db_xref="GeneID:116763192"
                     /translation="MVSPKANRSPNAMARRASRYCRSVHTGPATTTCPSEKCCRCGVC
                     LPSICPHTVXLPEPTCYDSCPPPCRIPRPRVPACFVLNSSPPTLGLETLSLTTFTQPC
                     CELCIPSCR"
     misc_feature    108..377
                     /gene="LOC116763192"
                     /note="Keratin, high-sulphur matrix protein; Region:
                     Keratin_matx; pfam04579"
                     /db_xref="CDD:461359"
ORIGIN      
        1 tttactttag acttggatac cacaacaggc taaaaggttt aaagtaaatg gtttctccaa
       61 aagcaaaccg gagtcccaat gccatggctc gccgtgcttc ccgttactgc cgcagtgtcc
      121 acaccggccc tgccaccacc acctgcccat ctgaaaaatg ctgccgatgc ggagtctgcc
      181 tgcccagcat ctgcccacac acggtttagt taccggagcc aacctgctat gacagctgtc
      241 ccccaccatg ccgcattcct cggccccgtg tgcccgcctg cttcgtgctc aactcatccc
      301 cgcctaccct gggcctggag accctcagcc tcacaacctt cactcagccc tgctgtgagc
      361 tctgcatccc aagctgccgc tgaccgatga ctgcctcgct cagttcctgg agataacact
      421 gaagctatct gttcagcatt cacttgccta ggtagtttat cagacattga ggcagaccag
      481 atggcctgga tatgcacaac ctacctttcg tcttaatgga aagaaaatca agaaatttta
      541 atggttattt ggctaaccat ttggttcatc tgggcaggtg aatgtcatct attatcaaaa
      601 gtattgatat ctataagacc tcagactgtt tgtttgtttg tctgtttttt ctgtctgcac
      661 agcttgtggg attttagttt cccgaccagg gatagaaccc aggccctcag cagtgagagg
      721 gtaaagtcat aaccactaga cctccaggga attccccaga ccgtatgttg ttggtcatgt
      781 tgcttcctag atcccattcc ttatattgag tattttcata gaggaaaaat aacttcttga
      841 tgggttttcc aataaacttt atttctgt
//
LOCUS       XM_032650637            2689 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD34 molecule (CD34), transcript variant
            X1, mRNA.
ACCESSION   XM_032650637
VERSION     XM_032650637.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2689
                     /gene="CD34"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 13 long SRA reads, 12
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763210"
     CDS             285..1436
                     /gene="CD34"
                     /codon_start=1
                     /product="hematopoietic progenitor cell antigen CD34
                     isoform X1"
                     /protein_id="XP_032506528.1"
                     /db_xref="GeneID:116763210"
                     /translation="MLVRRGARAGRGMPRGWTALCLLSLLPSGFTNTESLTTTATKTS
                     TPGISSTVPTTIPNQESTISSTSGNISLYTVSQDSSGNTAAISEPTVNFTSTSGITPV
                     PGTMNSSVQSQTSLATTVSSTPINFTTSEMTLQPSMLPGNISDSPYNSTSPVTSPTNP
                     YTSFSPIPSTIKGEIKCSRVKEVKLTQGICLELNETSSCEEFKKDNGEELTRVLCGKQ
                     QGEARAGVCSLLLAQSEVRPHCLLLVLANRTELSSKLQLLKKHQSDLKELGIQGFTEQ
                     DVGSHQSYSRKTLIALVTSGILLAVLGTTGYFLMNRRSWSPAGERLGEDPYYTENGGG
                     QGYSSGPGASPEAQGKASVNQGAQENGTGQATSRNGHSARQHVVADTEL"
     misc_feature    423..>797
                     /gene="CD34"
                     /note="BDLF3; Provisional; Region: PHA03255"
                     /db_xref="CDD:165513"
     misc_feature    852..1433
                     /gene="CD34"
                     /note="CD34/Podocalyxin family; Region: CD34_antigen;
                     pfam06365"
                     /db_xref="CDD:461884"
ORIGIN      
        1 agttgaacaa gacgtctggg gccctcacaa aacctttttt ggcctcgaca gcggcaaccc
       61 cagcctgcct cctaacgtcc tccgcctttg ggaccaagcg ggaagctcac gttagtggca
      121 gccaaggaga ggggttggcc gtgccaggac taaagaggga ggggagggga aaaagcaagt
      181 ttcgcccacc ccacgctcgg gcggaggggc gggagctgcg cgtccgggcc tggccaagca
      241 gcttctcggt ctctgtgcat ctcttcggga gcggcgcggg aaggatgctc gtccgcaggg
      301 gcgcgcgcgc ggggcgcggg atgccgcggg gatggaccgc gctctgcttg ctgagtttgc
      361 tgccctctgg gttcacaaat acagagagct tgactactac tgccacaaag acatctaccc
      421 caggaatatc ttcaactgtc cctacaacta tacccaacca ggaaagcaca atatcaagta
      481 cttctggaaa catcagcctc tacactgtct ctcaggacag cagtgggaac acagcagcca
      541 tctcagagcc tacagtcaat ttcacatcta cctctgggat caccccagtc cctggaacca
      601 tgaactcttc tgtccagtca cagacctctt tagccaccac agtgtcttct acccccatca
      661 actttacaac ttcagagatg accttgcagc ccagcatgtt acctggaaat atttcagatt
      721 ccccatacaa tagtaccagc cctgtgacat ctcccactaa cccctataca tcattttctc
      781 ctatcccaag taccatcaag ggagaaataa aatgttccag agtcaaagaa gtgaaattga
      841 cccaaggtat ctgcctggag ctaaatgaga cctccagctg tgaggagttt aagaaggaca
      901 atggagagga actgacccga gtcctgtgtg ggaagcagca gggtgaggcc agggccgggg
      961 tgtgctcctt gctcttggcc cagtctgagg tgaggcctca ctgcttgctg ctggtcttgg
     1021 ccaacagaac agaactttcc agcaagctcc aacttctgaa aaagcaccag tctgacctga
     1081 aagagctggg catccaaggc ttcactgaac aagatgtcgg gagccaccag agctattccc
     1141 gaaagacctt gattgcactg gtcacctcgg ggatcctgct ggctgtcttg ggcaccacgg
     1201 gctatttcct gatgaaccgc cgcagttgga gccccgcagg agaaaggctg ggcgaagacc
     1261 cttattacac ggagaacggt ggaggccagg gctatagctc aggccctgga gcctcccccg
     1321 aggctcaggg aaaggccagt gtgaatcaag gggctcagga gaacggcacc ggccaggcca
     1381 cctccagaaa cggccattca gcgagacaac acgtggtggc tgataccgaa ctgtgacagg
     1441 gggcgagcgg gcggggcgag actgggcaaa gtctggggaa ggagcccctc cctgcacctg
     1501 agcacgtgct gtctccctgc tgggggagcc tcccttatcc tccacccttt cccactgcac
     1561 accccgtcgg aggacgttcc tgggaccctg ccctgttcca ggccaagggg ttctcgccac
     1621 cttggggaga gacaggtagc tcctgccctt tccacattca gctccctgca cccagcctct
     1681 gggctgctct gcgtaaaggt gtgataggga aagccaaggt gcagggaaac tccttggggg
     1741 ggtcgagggc ttgcagcttc cacacagggg ccccttccct ccccatcctc tctgcctcat
     1801 tataggaact cccaggggaa agcacaggct tttctgggtt gtaatttcct cccaggagac
     1861 tttgcctttt actctttctt ccttatattt tctttctcta ctttagggaa accaaagcaa
     1921 tccctttcac ctgctccttt gtaatgatat agccagaaaa tcatgttgtc ttaaaccatc
     1981 tccctcattc cccctctaag gcactgtgga ttctgtcacc agctcccctc ttgctctcca
     2041 agttccctga gctcgctcca ccggccctgc ccgcgccccc ccaccccgcc caagttttag
     2101 aacaatgtcc tgtgtctgtg tgtttggggt acatggacac aaatgggtga gggcacatag
     2161 cttggccctt atctctgcgg ggccatgcag agcttctgct tgggctgcta cttctcctgt
     2221 agctcagagt ggacaggacc gtgggaccag atctctgagc tgtgcctctt gacctgtgtg
     2281 cttctgagga agactcttgc acggaggcta ggttctgacc ttaacctctg tctcaacggc
     2341 ttcctccctc ctctccctga ctcctgggtt gagctgtggc ctcagcctcc cagcagactc
     2401 ctttctgtct ctgccttccc aacccttaat ccttttactg ctctgcaacc catgtggtca
     2461 gggccccagc acgtctccag aggaccctca ccacaagcca ccttttctgt gagtgaccca
     2521 ggtcctgttt ttgtttctgt tttattccag aggggtgaaa agggatcctg gtttcaatga
     2581 cggttggaaa tagaattttc cagagatagg aagatggggt ggattttttt ttttcctgaa
     2641 taaaaaatgg tgtgtgtaaa tactgtaatt aaagtgatac tgaaacata
//
LOCUS       XM_032650647            2718 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD34 molecule (CD34), transcript variant
            X2, mRNA.
ACCESSION   XM_032650647
VERSION     XM_032650647.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2718
                     /gene="CD34"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 13 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763210"
     CDS             167..1147
                     /gene="CD34"
                     /codon_start=1
                     /product="hematopoietic progenitor cell antigen CD34
                     isoform X2"
                     /protein_id="XP_032506538.1"
                     /db_xref="GeneID:116763210"
                     /translation="MLVRRGARAGRGMPRGWTALCLLSLLPSGFTNTESLTTTATKTS
                     TPGISSTVPTTIPNQESTISSTSGNISLYTVSQDSSGNTAAISEPTVNFTSTSGITPV
                     PGTMNSSVQSQTSLATTVSSTPINFTTSEMTLQPSMLPGNISDSPYNSTSPVTSPTNP
                     YTSFSPIPSTIKGEIKCSRVKEVKLTQGICLELNETSSCEEFKKDNGEELTRVLCGKQ
                     QGEARAGVCSLLLAQSEVRPHCLLLVLANRTELSSKLQLLKKHQSDLKELGIQGFTEQ
                     DVGSHQSYSRKTLIALVTSGILLAVLGTTGYFLMNRRSWSPAGERLELEP"
     misc_feature    305..>679
                     /gene="CD34"
                     /note="BDLF3; Provisional; Region: PHA03255"
                     /db_xref="CDD:165513"
     misc_feature    734..>1144
                     /gene="CD34"
                     /note="CD34/Podocalyxin family; Region: CD34_antigen;
                     pfam06365"
                     /db_xref="CDD:461884"
ORIGIN      
        1 cagccaagga gaggggttgg ccgtgccagg actaaagagg gaggggaggg gaaaaagcaa
       61 gtttcgccca ccccacgctc gggcggaggg gcgggagctg cgcgtccggg cctggccaag
      121 cagcttctcg gtctctgtgc atctcttcgg gagcggcgcg ggaaggatgc tcgtccgcag
      181 gggcgcgcgc gcggggcgcg ggatgccgcg gggatggacc gcgctctgct tgctgagttt
      241 gctgccctct gggttcacaa atacagagag cttgactact actgccacaa agacatctac
      301 cccaggaata tcttcaactg tccctacaac tatacccaac caggaaagca caatatcaag
      361 tacttctgga aacatcagcc tctacactgt ctctcaggac agcagtggga acacagcagc
      421 catctcagag cctacagtca atttcacatc tacctctggg atcaccccag tccctggaac
      481 catgaactct tctgtccagt cacagacctc tttagccacc acagtgtctt ctacccccat
      541 caactttaca acttcagaga tgaccttgca gcccagcatg ttacctggaa atatttcaga
      601 ttccccatac aatagtacca gccctgtgac atctcccact aacccctata catcattttc
      661 tcctatccca agtaccatca agggagaaat aaaatgttcc agagtcaaag aagtgaaatt
      721 gacccaaggt atctgcctgg agctaaatga gacctccagc tgtgaggagt ttaagaagga
      781 caatggagag gaactgaccc gagtcctgtg tgggaagcag cagggtgagg ccagggccgg
      841 ggtgtgctcc ttgctcttgg cccagtctga ggtgaggcct cactgcttgc tgctggtctt
      901 ggccaacaga acagaacttt ccagcaagct ccaacttctg aaaaagcacc agtctgacct
      961 gaaagagctg ggcatccaag gcttcactga acaagatgtc gggagccacc agagctattc
     1021 ccgaaagacc ttgattgcac tggtcacctc ggggatcctg ctggctgtct tgggcaccac
     1081 gggctatttc ctgatgaacc gccgcagttg gagccccgca ggagaaaggc tggagctgga
     1141 accctgatcg ctcttcagga agaaaggagt ctgcacgtgc aacctccatc ctcccctccc
     1201 actcccttcc tcttcctccc accccccttc ctgctgccct gcttacgaga taatgctcct
     1261 ttatttatac accatctagg gcgaagaccc ttattacacg gagaacggtg gaggccaggg
     1321 ctatagctca ggccctggag cctcccccga ggctcaggga aaggccagtg tgaatcaagg
     1381 ggctcaggag aacggcaccg gccaggccac ctccagaaac ggccattcag cgagacaaca
     1441 cgtggtggct gataccgaac tgtgacaggg ggcgagcggg cggggcgaga ctgggcaaag
     1501 tctggggaag gagcccctcc ctgcacctga gcacgtgctg tctccctgct gggggagcct
     1561 cccttatcct ccaccctttc ccactgcaca ccccgtcgga ggacgttcct gggaccctgc
     1621 cctgttccag gccaaggggt tctcgccacc ttggggagag acaggtagct cctgcccttt
     1681 ccacattcag ctccctgcac ccagcctctg ggctgctctg cgtaaaggtg tgatagggaa
     1741 agccaaggtg cagggaaact ccttgggggg gtcgagggct tgcagcttcc acacaggggc
     1801 cccttccctc cccatcctct ctgcctcatt ataggaactc ccaggggaaa gcacaggctt
     1861 ttctgggttg taatttcctc ccaggagact ttgcctttta ctctttcttc cttatatttt
     1921 ctttctctac tttagggaaa ccaaagcaat ccctttcacc tgctcctttg taatgatata
     1981 gccagaaaat catgttgtct taaaccatct ccctcattcc ccctctaagg cactgtggat
     2041 tctgtcacca gctcccctct tgctctccaa gttccctgag ctcgctccac cggccctgcc
     2101 cgcgcccccc caccccgccc aagttttaga acaatgtcct gtgtctgtgt gtttggggta
     2161 catggacaca aatgggtgag ggcacatagc ttggccctta tctctgcggg gccatgcaga
     2221 gcttctgctt gggctgctac ttctcctgta gctcagagtg gacaggaccg tgggaccaga
     2281 tctctgagct gtgcctcttg acctgtgtgc ttctgaggaa gactcttgca cggaggctag
     2341 gttctgacct taacctctgt ctcaacggct tcctccctcc tctccctgac tcctgggttg
     2401 agctgtggcc tcagcctccc agcagactcc tttctgtctc tgccttccca acccttaatc
     2461 cttttactgc tctgcaaccc atgtggtcag ggccccagca cgtctccaga ggaccctcac
     2521 cacaagccac cttttctgtg agtgacccag gtcctgtttt tgtttctgtt ttattccaga
     2581 ggggtgaaaa gggatcctgg tttcaatgac ggttggaaat agaattttcc agagatagga
     2641 agatggggtg gatttttttt tttcctgaat aaaaaatggt gtgtgtaaat actgtaatta
     2701 aagtgatact gaaacata
//
LOCUS       XM_032650663            1832 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulointerstitial nephritis antigen like
            1 (TINAGL1), transcript variant X1, mRNA.
ACCESSION   XM_032650663
VERSION     XM_032650663.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1832
                     /gene="TINAGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 9 Proteins, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763215"
     CDS             94..1491
                     /gene="TINAGL1"
                     /codon_start=1
                     /product="tubulointerstitial nephritis antigen-like
                     isoform X1"
                     /protein_id="XP_032506554.1"
                     /db_xref="GeneID:116763215"
                     /translation="MWRCPLGLLLLLTGELALGAQRGRGRRELAPALHLRGIRDAGGR
                     YCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQG
                     CMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDENMIKAINQGNYGWRAGNH
                     SAFWGMTLDEGIRYRLGTIRPSSSVTNMNEIHTVLGPGEVLPRAFEASEKWPNLIHDP
                     LDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCRGGRLDGA
                     WWFLRRRGVVSDHCYPFSGHGWDEAGSAPRCMMHSRAMGRGKRQATARCPSSYVHAND
                     IYQVTPAYRLGSNEKEIMKELMENGPVQALMEVHEDFFLYQSGIYSHTPVSLGRPEQY
                     RHHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGANECDIESFV
                     LGVWGRVGMEDMGHH"
     misc_feature    247..369
                     /gene="TINAGL1"
                     /note="Somatomedin B domain; Region: Somatomedin_B;
                     cl02508"
                     /db_xref="CDD:470596"
     misc_feature    697..1452
                     /gene="TINAGL1"
                     /note="Cathepsin B group; composed of cathepsin B and
                     similar proteins, including tubulointerstitial nephritis
                     antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like
                     cysteine peptidase which is expressed in all tissues and
                     functions primarily as an...; Region:
                     Peptidase_C1A_CathepsinB; cd02620"
                     /db_xref="CDD:239111"
     misc_feature    order(754..756,772..774,1285..1287,1360..1362)
                     /gene="TINAGL1"
                     /note="active site"
                     /db_xref="CDD:239111"
     misc_feature    order(907..912,1183..1185,1279..1281,1288..1290,
                     1438..1440)
                     /gene="TINAGL1"
                     /note="S2 subsite [active]"
                     /db_xref="CDD:239111"
ORIGIN      
        1 acttgacttt gagtgtccgg cggtcgcagg agcgggaagg cggaggcgag tagggcagcc
       61 gggctcagcc cacacccctc accaggaggc accatgtggc gatgtccact ggggctgctg
      121 ctgctgctga ctggcgagtt ggccctgggt gcccagcggg gtcgtgggcg ccgggagcta
      181 gcaccggctc tccacctgcg gggcatccgg gatgcgggtg gccggtactg ccaggagcag
      241 gacctgtgct gccgcggccg cgccgatgac tgcgccctgc cctacctggg tgctacctgt
      301 tactgtgacc tcttctgcaa ccgcaccgtc tccgactgct gccctgactt ctgggacttc
      361 tgcctcggcg tgccaccccc ctttcccccc atccaaggat gtatgcacag gggtcgcatc
      421 tatccagtcc tgggaaccta ctgggacaac tgtaaccgtt gcacctgcca ggagaaaggg
      481 cagtgggagt gtgaccagga gccatgcctg gtggacgaaa acatgatcaa ggccatcaac
      541 caaggcaact atgggtggcg ggctgggaac cacagtgcct tctggggcat gaccctggat
      601 gagggcattc gctaccgcct gggcaccatc cgcccgtctt cctccgtcac caatatgaat
      661 gagattcata cagtgctggg cccaggggag gtgctgccca gagccttcga ggcctctgag
      721 aagtggccca acttgatcca cgaccctctt gaccagggca actgtgcagg ctcctgggcc
      781 ttctccacgg cagctgtggc atctgatcga gtctcaatcc attctctggg gcacatgaca
      841 cctgtcctgt caccccagaa cctgctgtct tgtgacacgc acaaccagca gggttgccgc
      901 ggtgggcgac ttgacggtgc ctggtggttc ctgcgccgtc gaggggttgt gtctgaccac
      961 tgctacccgt tctcgggcca tgggtgggac gaggctggct ccgcaccccg ctgcatgatg
     1021 cacagtcggg ccatgggtcg gggcaaacgg caggccaccg cccgctgccc cagtagctat
     1081 gtccatgcca atgacatcta ccaggtcact cctgcctacc gcctcggctc caacgagaag
     1141 gagatcatga aggagctgat ggagaatggc cctgtccaag ccctcatgga ggtgcatgag
     1201 gacttcttcc tgtaccagag cggcatctac agccatacac cagtgagcct tgggaggccg
     1261 gagcaatacc gccatcatgg gacccattcg gtcaagatca cagggtgggg ggaggagacg
     1321 ctgcccgacg gaaggacgct caagtactgg acggcggcca actcgtgggg cccagcctgg
     1381 ggagagaggg gccacttccg catcgtgcgc ggcgccaacg agtgcgacat cgagagcttc
     1441 gtgctgggcg tctggggccg cgtgggaatg gaggacatgg gtcaccactg aggccgcggg
     1501 caccacgccg ggaagagccc tctgtggggc agcagccccc gcccgcccga cggagctccg
     1561 ggccccaggg gcctaatcct cgcgcgcgag ggttccgctg acgctgacgc agctcccggc
     1621 ttgggagcct cggacaggcg aggctggcgg agcccccaga cctcccagcg ggggccgggc
     1681 agggcctggc cgggaaggag caagaccacc gaagctagga cacccccttc tccggcccca
     1741 ccactccacc ccacccttgt actcttattt ctcaaagata tttatttttc ttttcactgt
     1801 tttaaaataa aaacaaagta ttgataacta tg
//
LOCUS       XM_032650674            2008 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulointerstitial nephritis antigen like
            1 (TINAGL1), transcript variant X2, mRNA.
ACCESSION   XM_032650674
VERSION     XM_032650674.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2008
                     /gene="TINAGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 9 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763215"
     CDS             278..1675
                     /gene="TINAGL1"
                     /codon_start=1
                     /product="tubulointerstitial nephritis antigen-like
                     isoform X1"
                     /protein_id="XP_032506565.1"
                     /db_xref="GeneID:116763215"
                     /translation="MWRCPLGLLLLLTGELALGAQRGRGRRELAPALHLRGIRDAGGR
                     YCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQG
                     CMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDENMIKAINQGNYGWRAGNH
                     SAFWGMTLDEGIRYRLGTIRPSSSVTNMNEIHTVLGPGEVLPRAFEASEKWPNLIHDP
                     LDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCRGGRLDGA
                     WWFLRRRGVVSDHCYPFSGHGWDEAGSAPRCMMHSRAMGRGKRQATARCPSSYVHAND
                     IYQVTPAYRLGSNEKEIMKELMENGPVQALMEVHEDFFLYQSGIYSHTPVSLGRPEQY
                     RHHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGANECDIESFV
                     LGVWGRVGMEDMGHH"
     misc_feature    431..553
                     /gene="TINAGL1"
                     /note="Somatomedin B domain; Region: Somatomedin_B;
                     cl02508"
                     /db_xref="CDD:470596"
     misc_feature    881..1636
                     /gene="TINAGL1"
                     /note="Cathepsin B group; composed of cathepsin B and
                     similar proteins, including tubulointerstitial nephritis
                     antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like
                     cysteine peptidase which is expressed in all tissues and
                     functions primarily as an...; Region:
                     Peptidase_C1A_CathepsinB; cd02620"
                     /db_xref="CDD:239111"
     misc_feature    order(938..940,956..958,1469..1471,1544..1546)
                     /gene="TINAGL1"
                     /note="active site"
                     /db_xref="CDD:239111"
     misc_feature    order(1091..1096,1367..1369,1463..1465,1472..1474,
                     1622..1624)
                     /gene="TINAGL1"
                     /note="S2 subsite [active]"
                     /db_xref="CDD:239111"
ORIGIN      
        1 aggaagtgag catacagaga gaggacacaa ggcacgggaa ctgagaggag aaacattcca
       61 agaaggtggg agccctcggc tgtgtcaaat actgcccaga ggtccccaaa ctcggagctc
      121 tgctgccccc tatcctccct tgtccgcgtg agcccctcag cccacggcga agcccactgg
      181 gcagttctta ccagtgtcac accacagttg tttctgcttc ggttggagtt ccgccctaag
      241 ggaacggctt ccaccggaga cccaacaagg aggcaccatg tggcgatgtc cactggggct
      301 gctgctgctg ctgactggcg agttggccct gggtgcccag cggggtcgtg ggcgccggga
      361 gctagcaccg gctctccacc tgcggggcat ccgggatgcg ggtggccggt actgccagga
      421 gcaggacctg tgctgccgcg gccgcgccga tgactgcgcc ctgccctacc tgggtgctac
      481 ctgttactgt gacctcttct gcaaccgcac cgtctccgac tgctgccctg acttctggga
      541 cttctgcctc ggcgtgccac ccccctttcc ccccatccaa ggatgtatgc acaggggtcg
      601 catctatcca gtcctgggaa cctactggga caactgtaac cgttgcacct gccaggagaa
      661 agggcagtgg gagtgtgacc aggagccatg cctggtggac gaaaacatga tcaaggccat
      721 caaccaaggc aactatgggt ggcgggctgg gaaccacagt gccttctggg gcatgaccct
      781 ggatgagggc attcgctacc gcctgggcac catccgcccg tcttcctccg tcaccaatat
      841 gaatgagatt catacagtgc tgggcccagg ggaggtgctg cccagagcct tcgaggcctc
      901 tgagaagtgg cccaacttga tccacgaccc tcttgaccag ggcaactgtg caggctcctg
      961 ggccttctcc acggcagctg tggcatctga tcgagtctca atccattctc tggggcacat
     1021 gacacctgtc ctgtcacccc agaacctgct gtcttgtgac acgcacaacc agcagggttg
     1081 ccgcggtggg cgacttgacg gtgcctggtg gttcctgcgc cgtcgagggg ttgtgtctga
     1141 ccactgctac ccgttctcgg gccatgggtg ggacgaggct ggctccgcac cccgctgcat
     1201 gatgcacagt cgggccatgg gtcggggcaa acggcaggcc accgcccgct gccccagtag
     1261 ctatgtccat gccaatgaca tctaccaggt cactcctgcc taccgcctcg gctccaacga
     1321 gaaggagatc atgaaggagc tgatggagaa tggccctgtc caagccctca tggaggtgca
     1381 tgaggacttc ttcctgtacc agagcggcat ctacagccat acaccagtga gccttgggag
     1441 gccggagcaa taccgccatc atgggaccca ttcggtcaag atcacagggt ggggggagga
     1501 gacgctgccc gacggaagga cgctcaagta ctggacggcg gccaactcgt ggggcccagc
     1561 ctggggagag aggggccact tccgcatcgt gcgcggcgcc aacgagtgcg acatcgagag
     1621 cttcgtgctg ggcgtctggg gccgcgtggg aatggaggac atgggtcacc actgaggccg
     1681 cgggcaccac gccgggaaga gccctctgtg gggcagcagc ccccgcccgc ccgacggagc
     1741 tccgggcccc aggggcctaa tcctcgcgcg cgagggttcc gctgacgctg acgcagctcc
     1801 cggcttggga gcctcggaca ggcgaggctg gcggagcccc cagacctccc agcgggggcc
     1861 gggcagggcc tggccgggaa ggagcaagac caccgaagct aggacacccc cttctccggc
     1921 cccaccactc caccccaccc ttgtactctt atttctcaaa gatatttatt tttcttttca
     1981 ctgttttaaa ataaaaacaa agtattga
//
LOCUS       XM_032650681            1448 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulointerstitial nephritis antigen like
            1 (TINAGL1), transcript variant X3, mRNA.
ACCESSION   XM_032650681
VERSION     XM_032650681.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1448
                     /gene="TINAGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763215"
     CDS             29..1117
                     /gene="TINAGL1"
                     /codon_start=1
                     /product="tubulointerstitial nephritis antigen-like
                     isoform X2"
                     /protein_id="XP_032506572.1"
                     /db_xref="GeneID:116763215"
                     /translation="MHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDENMIKA
                     INQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVTNMNEIHTVLGPGEVLPRAF
                     EASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTH
                     NQQGCRGGRLDGAWWFLRRRGVVSDHCYPFSGHGWDEAGSAPRCMMHSRAMGRGKRQA
                     TARCPSSYVHANDIYQVTPAYRLGSNEKEIMKELMENGPVQALMEVHEDFFLYQSGIY
                     SHTPVSLGRPEQYRHHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRI
                     VRGANECDIESFVLGVWGRVGMEDMGHH"
     misc_feature    62..>136
                     /gene="TINAGL1"
                     /note="Pacifastin inhibitor (LCMII); Region: Pacifastin_I;
                     pfam05375"
                     /db_xref="CDD:253170"
     misc_feature    323..1078
                     /gene="TINAGL1"
                     /note="Cathepsin B group; composed of cathepsin B and
                     similar proteins, including tubulointerstitial nephritis
                     antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like
                     cysteine peptidase which is expressed in all tissues and
                     functions primarily as an...; Region:
                     Peptidase_C1A_CathepsinB; cd02620"
                     /db_xref="CDD:239111"
     misc_feature    order(380..382,398..400,911..913,986..988)
                     /gene="TINAGL1"
                     /note="active site"
                     /db_xref="CDD:239111"
     misc_feature    order(533..538,809..811,905..907,914..916,1064..1066)
                     /gene="TINAGL1"
                     /note="S2 subsite [active]"
                     /db_xref="CDD:239111"
ORIGIN      
        1 gctcagccca cacccctcac caggatgtat gcacaggggt cgcatctatc cagtcctggg
       61 aacctactgg gacaactgta accgttgcac ctgccaggag aaagggcagt gggagtgtga
      121 ccaggagcca tgcctggtgg acgaaaacat gatcaaggcc atcaaccaag gcaactatgg
      181 gtggcgggct gggaaccaca gtgccttctg gggcatgacc ctggatgagg gcattcgcta
      241 ccgcctgggc accatccgcc cgtcttcctc cgtcaccaat atgaatgaga ttcatacagt
      301 gctgggccca ggggaggtgc tgcccagagc cttcgaggcc tctgagaagt ggcccaactt
      361 gatccacgac cctcttgacc agggcaactg tgcaggctcc tgggccttct ccacggcagc
      421 tgtggcatct gatcgagtct caatccattc tctggggcac atgacacctg tcctgtcacc
      481 ccagaacctg ctgtcttgtg acacgcacaa ccagcagggt tgccgcggtg ggcgacttga
      541 cggtgcctgg tggttcctgc gccgtcgagg ggttgtgtct gaccactgct acccgttctc
      601 gggccatggg tgggacgagg ctggctccgc accccgctgc atgatgcaca gtcgggccat
      661 gggtcggggc aaacggcagg ccaccgcccg ctgccccagt agctatgtcc atgccaatga
      721 catctaccag gtcactcctg cctaccgcct cggctccaac gagaaggaga tcatgaagga
      781 gctgatggag aatggccctg tccaagccct catggaggtg catgaggact tcttcctgta
      841 ccagagcggc atctacagcc atacaccagt gagccttggg aggccggagc aataccgcca
      901 tcatgggacc cattcggtca agatcacagg gtggggggag gagacgctgc ccgacggaag
      961 gacgctcaag tactggacgg cggccaactc gtggggccca gcctggggag agaggggcca
     1021 cttccgcatc gtgcgcggcg ccaacgagtg cgacatcgag agcttcgtgc tgggcgtctg
     1081 gggccgcgtg ggaatggagg acatgggtca ccactgaggc cgcgggcacc acgccgggaa
     1141 gagccctctg tggggcagca gcccccgccc gcccgacgga gctccgggcc ccaggggcct
     1201 aatcctcgcg cgcgagggtt ccgctgacgc tgacgcagct cccggcttgg gagcctcgga
     1261 caggcgaggc tggcggagcc cccagacctc ccagcggggg ccgggcaggg cctggccggg
     1321 aaggagcaag accaccgaag ctaggacacc cccttctccg gccccaccac tccaccccac
     1381 ccttgtactc ttatttctca aagatattta tttttctttt cactgtttta aaataaaaac
     1441 aaagtatt
//
LOCUS       XM_032650693            5568 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 30 member 1
            (SLC30A1), mRNA.
ACCESSION   XM_032650693
VERSION     XM_032650693.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5568
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5568
                     /gene="SLC30A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 26 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763224"
     CDS             134..1651
                     /gene="SLC30A1"
                     /codon_start=1
                     /product="zinc transporter 1"
                     /protein_id="XP_032506584.1"
                     /db_xref="GeneID:116763224"
                     /translation="MGCWGRNRGRLLCMLMLTFMFMVLEVVVSRVTSSLAMLSDSFHM
                     LSDVLALVVALVAERFAQRTHATQKNTFGWIRAEVMGALVNAIFLTGLCFAILLEAIE
                     RFLEPHEMQQPLVVLGVGVAGLVVNVLGLCLFHHHSGFGNDSGHGHSHGGHSHGLPKG
                     GRGKSTRTGGSDNRAPGEQGPDQEETNILVANSSNSNGLKLDRTDPEKSRSDAMEVQV
                     NGNLIREPDQVELEDDDDKAGQLNMRGVFLHVFGDALGSVIVVVNALVFYFSWEGCPE
                     GEMCVNPCTPDPCKAFVELINSTHATVYEAGPCWVLYLDPTLCIVMVCILLYTTYPLL
                     KESALILLQTVPKQIDIKNLIKELRDVEGVEEVHELHVWQLAGSRIIATAHIKCEDPT
                     SYMQVAKIIKDVFHNHGIHATTIQPEFASVGSKSSVVPCELACRTQCALKQCCGTRPQ
                     AQSGKDAEKAPAVSISCLELSDNLEKQPRRTKVENIPAVVIEIKKMPNKQPESSL"
     misc_feature    146..1387
                     /gene="SLC30A1"
                     /note="Co/Zn/Cd efflux system component [Inorganic ion
                     transport and metabolism]; Region: CzcD; COG1230"
                     /db_xref="CDD:440843"
ORIGIN      
        1 cgagcggccc ggctcgggcg gtgagagccc cgcgccgccc tccatccgtc gccgggtcgc
       61 cggccctcgg cgcctcgccg ccgccgcctc acgagtgtcc gggccgcgct cggcgggctc
      121 ctgagccgca gccatggggt gctggggccg gaaccggggc cggctgctgt gcatgctgat
      181 gctgaccttc atgttcatgg tcctggaggt ggtggtgagc cgggtgactt cgtcgctggc
      241 gatgctgtcc gactccttcc acatgctgtc ggatgtgttg gcgctggtgg tggcgctggt
      301 ggccgagcgc ttcgcccagc ggacccacgc cacccagaag aacaccttcg gctggatccg
      361 ggccgaagtg atgggggctc tggtgaacgc catcttcctg accggcctct gcttcgccat
      421 cctgctggag gccatcgagc gcttcctcga gccgcacgag atgcagcagc cgctggtggt
      481 cctcggggtc ggcgtggcgg ggctggtggt caacgtgctg gggctctgcc tcttccacca
      541 tcatagcggc ttcggcaacg actccggcca cgggcactcg cacggggggc acagccacgg
      601 cctccccaag gggggccgcg gcaagagcac ccgcaccggg ggtagcgaca acagggcccc
      661 aggtgagcag ggtcccgacc aggaggagac caacatcctg gtggccaata gcagcaactc
      721 caacgggctg aaactggacc ggacagatcc agagaagtcc agaagtgatg caatggaagt
      781 acaagtgaat gggaatctta tcagagaacc tgaccaggtg gaattggaag atgatgatga
      841 taaggctgga cagcttaaca tgcgtggagt ttttctgcat gtctttggag atgctttggg
      901 ttcagtgatt gtagtagtaa atgccttagt cttttacttt tcttgggaag gttgtcctga
      961 aggggagatg tgtgtgaacc catgtacccc tgacccctgc aaagcatttg tagaattaat
     1021 taatagtact catgcaacag tttatgaggc tggtccttgc tgggtgctat atttagatcc
     1081 aactctttgt attgtaatgg tttgtatact tctttacaca acttatccat tacttaagga
     1141 gtctgctctt attcttctcc aaactgttcc taaacaaatt gatatcaaaa atttgataaa
     1201 agaacttcga gatgttgaag gagttgagga agttcatgaa ttacatgttt ggcaacttgc
     1261 tggaagcaga atcattgcca ctgctcacat aaaatgtgaa gacccgacat catacatgca
     1321 ggtggctaag atcattaaag acgttttcca taatcacgga attcatgcta ctaccattca
     1381 gcctgaattt gctagtgtag gctctaagtc aagtgtagtc ccatgtgaac ttgcctgcag
     1441 aactcagtgt gctttgaagc aatgttgtgg gacacggcca caagcccaat ctggaaagga
     1501 tgcagaaaag gccccagcag ttagcatttc ttgtttagaa cttagtgaca atctagagaa
     1561 gcagcccagg aggactaaag ttgaaaacat ccctgctgtt gtgatagaga ttaaaaaaat
     1621 gccaaacaaa caacctgaat catctttgtg agtcttggaa aagatgtgat atttgacttt
     1681 tgctttaaac tgcaagagga aaaagactcc attgaaattc tatgtttgcc aagtagtgta
     1741 attgaagtcc ttgtctggtc acacagttta attctatttt tgtaagaaca taatgggact
     1801 gcttaacaga gttctatatt acaactttgt gattattagt gcagagtaca gctatgctgt
     1861 aacagttttg gaaagccagt tttaacacta tgttacattt ttgtttaaag taagtataaa
     1921 ccttatataa cataatgaca tttgatttcc agtttttcca tggtaaaaaa ttaattaggg
     1981 ggataaataa attaaaattg ttactggaat ttctctgctt ttctttcccc ccagtgttat
     2041 attttgttca ttagaattat aaatgctgga actttaaaaa tcatcaacag gtttgtttct
     2101 tttgacattt tgacatgtaa tatttacttg ccctttgaga tcattgcata gcataatggc
     2161 aacatatttt aagaatgact cacgaaaatt attaggaaaa gttccttttt ttcttcacat
     2221 gggggtattt atgatactga agatcagtta ctattctgta tcttatattg ctgagtatta
     2281 ttctaacaaa tagtgaaata attaacaaat tgaactgtag tgtacatata atagggcata
     2341 tggggagtaa gagcagggaa gaaagtttac caaattaaat atttagattc ttgtatgtta
     2401 atatgcagac tacatttcta aattattctg agaattttaa cctttttttt tttttttaaa
     2461 aaaaaaaacg tctaaaacat ggacatgttc accagcatta ctttctttga aagattggca
     2521 ttgggaacat tgagttgaaa gtttactcat aaaatatata cagtaaatat ttttaaggac
     2581 attaaattta ataactacat gttaaatgaa agcttattaa tctaatcttt taaattgtgg
     2641 gttttaaaaa taacttcaga gctagtcatt tcacagtgac caatcatgaa cggattcaac
     2701 agagcttttt gagcccaacc agcaacgcct gtgctctgcc aagagccact gacttgtgag
     2761 aaaaaaggaa tctgaaggtt aatgcagttt ggatattaaa ttctcaaaaa gcaaagttag
     2821 ttaaggcaca attaataatt gagattctat aagtcattct gtcttgacat tgctcagatc
     2881 ttccaatagt agcttatttt gcaagatgcc ataatatcta cacaggaaat tgtttttagc
     2941 tatttcattg ttggtatgga ttccaaatcc atacacaaat attatttaag ggtatttaag
     3001 ttatattttt cttgataggg aggggttatg ctttgtgaag aaactagatt tttgtcctca
     3061 aaaggatgga tattaatatc agttatcatg tatagctcta tttttctaga aacgaggtat
     3121 cctgactact ttagtaactt ttatagctga ctacttttgg gatggctacc ttttgggatt
     3181 tgaaataatt cattatctaa tgggtcttaa gatgaaaatg gtggcatttg acagttaact
     3241 ttttaaaggg atgatctttt gtggtagatg gtgtgttttt ttcctagtgt aagcctattg
     3301 ctggcaatgg gcctatttaa gaacacccga tttttccagt gagaatgagg taattttagg
     3361 aacacagttt gtaagttcac atttgctatc atgggccaaa accataacct gccaatttgc
     3421 aatacatctt tatcatttaa tacttttctc tgatattgtg tatttcaatt cctaaactgg
     3481 tagttacttt gaattttgca aacatttttt ttaaacatga aattggggaa tctcatgggt
     3541 gaacaagaga aagcttcaaa ctgtatcatg tacattcctg atttaacact ttacaaaacc
     3601 attttttgaa gatctcgaaa gagtttatgt tatagaaaca tgtcagtaat gatacaaaag
     3661 gataactggt aaaatatatt acattcaatg aggttttctt tacagtgctc tgttgggtct
     3721 atttcttaaa ggttgtgtaa tgcataagac atcgactgaa aggatttttt taaatggtgt
     3781 ataagcatgg gacaagggct tttttttttt tcataagtgc tttgaaagta acagccttca
     3841 gatttcagtt atttcacttt tgataatttt aagtagctca tatgtaacaa agtggtacca
     3901 taggattctc ttttttcaaa ggacttttgt cataatagca aaatcagtgg gcactgactc
     3961 accttttgtt ttagcagaga attatttatt tctttacaat gcactttcta acccattttt
     4021 agctatatta gcattatctt ttttaaaaat gcttttatat ttaaatattg tgggatttaa
     4081 gtgtcttttc caaaatagct tattccttcc tgcaagaaaa tgagggaaat accatgaatt
     4141 attaggagac ttaaacccaa tatttaaatg ctgttttata acactgcatc agttttagga
     4201 ggtgcatctc gcctgctggc tcttttatat ttgagcaaga tcagtgtatt tagaatatgt
     4261 gtttagaaat gtgtctgttg tctcaattta gtaaggaggt gctacatgtg cctgaattaa
     4321 aatcaaccca gacatttttt ccaacaaatg ccgccttagt gacgagagat ttaattctcc
     4381 attgtcacat tttagtttat atgatttttt aataaggttt ctttttgaag agcatctgcg
     4441 ctataaaagt atggactaga acctaaaaga atagtcaaaa actcacaaac gctttgctgt
     4501 atgtatttta acattttaga aaacaatata tttgaataag gtgtgtaatt tgaacaggaa
     4561 agatttccat caagagcacc ttggaaaatc acaacaggta gaagactatg ttaatatgtt
     4621 tgtatcttgg taacatcctc agttaatttt gaatttttga aagttttgag ggaaaagtcc
     4681 tatggaatct aatgtgaagt atttagtagg ctaactggta ttgagttgaa gctttttact
     4741 gtttttaagc agatatcatt tgatgaaatg tcatttacct gctgtcctaa gatgttcata
     4801 catacgcaaa taaggagaag aatcctacca tatagaaata tttattttaa tagagtttca
     4861 tttaagtcat aaaacagtgt taaaactctt gggaaggtgg agggtttctc gttttttaaa
     4921 ttgaaactgt catacagtgt tggaccatct gaaatgggaa ttgtaacagc actattttga
     4981 tgtagctcta ccaatattat gtgacaatgc tatttagttt tactaacaag ctctggaata
     5041 cttagcagtc attttcactg gcacaagagc tttttgtatg tcattcaatt taaactttta
     5101 aaccaaaaac tttgtggttt agtgtctttg gcaaaaagat gctgaaggga atgtaacata
     5161 caattaatat gtggttatat ataaaaagac acaaaaaatt gccatgttat ggttctgcct
     5221 tgaaacagca caatgaagtg tatcagtgta ttctgtgatt ctttatgaaa cttacatgtt
     5281 gtgttgttct gtgtctgcca tagggtgtcc tttgggccag atgtggcaca gttaaatgca
     5341 attatcatct catgaaatgc agatgcagat aaaatgtctt tagtgctgca acattttacc
     5401 taacttttgt atgttttctg actgtgcgtt gtttccaaag ctgttcctac ctcaccatga
     5461 ggctttatgg attgttatgt attataaatg ttctttatga gacagactac tgtgtttctt
     5521 ctcatttatt aaaagttaag tagaaaaata aactaatttt aatatcta
//
LOCUS       XM_032650704            1173 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LIM homeobox 4 (LHX4), mRNA.
ACCESSION   XM_032650704
VERSION     XM_032650704.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1173
                     /gene="LHX4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 20 Proteins, and 20%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763232"
     CDS             1..1173
                     /gene="LHX4"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx4"
                     /protein_id="XP_032506595.1"
                     /db_xref="GeneID:116763232"
                     /translation="MMQSAAVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILK
                     VLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVV
                     RKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRP
                     RTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKD
                     AGRHRWGQFYKSVKRSRGGSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGN
                     VGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTV
                     DSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPASWLDEMDPPPF"
     misc_feature    88..243
                     /gene="LHX4"
                     /note="The first LIM domain of Lhx4; Region: LIM1_Lhx4;
                     cd09468"
                     /db_xref="CDD:188852"
     misc_feature    order(88..90,97..99,151..153,160..162,169..171,178..180,
                     229..231,238..240)
                     /gene="LHX4"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188852"
     misc_feature    265..432
                     /gene="LHX4"
                     /note="The second LIM domain of Lhx3-Lhx4 family; Region:
                     LIM2_Lhx3_Lhx4; cd09376"
                     /db_xref="CDD:188762"
     misc_feature    order(265..267,274..276,331..333,340..342,349..351,
                     358..360,418..420,427..429)
                     /gene="LHX4"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188762"
     misc_feature    order(301..303,376..378)
                     /gene="LHX4"
                     /note="Isl binding site; other site"
                     /db_xref="CDD:188762"
     misc_feature    472..642
                     /gene="LHX4"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 atgatgcaga gcgcagctgt ccccgcggag ggggctgtca aggggctccc ggagatgctt
       61 ggtgtgccga tgcaacagat cccccagtgt gctggctgca accagcatat cctggacaag
      121 ttcatcctga aggtcctgga cagacactgg cacagctcct gcctcaagtg tgcagactgc
      181 cagatgcagc tagctgacag gtgcttctcc agggccggga gcgtctactg caaggaggac
      241 ttcttcaagc gcttcggcac gaaatgcacg gcctgccagc agggcatccc cccgacccag
      301 gtggtcagga aggcgcagga cttcgtctac cacctgcact gcttcgcctg catcatctgt
      361 aaccggcagc tggccacggg ggacgagttc tacctcatgg aggacggacg gctggtgtgc
      421 aaggaggact acgagacggc caagcagaac gatgactcag aggccggagc taagcgaccc
      481 cggaccacca tcacggcgaa gcagctggag acattgaaga acgcctacaa gaactcccct
      541 aagcctgccc ggcacgtgag ggagcagctg tcctcggaga caggcctgga catgagggtc
      601 gtacaggttt ggtttcagaa cagaagggcc aaggaaaagc ggctgaagaa ggacgcgggg
      661 cggcaccgct gggggcagtt ctataagagc gtcaagagga gccggggagg cagcaaacag
      721 gagaaggaga gctcggcaga ggactgtggg gttagtgaca gtgagctgag cttccgagag
      781 gatcaaattc tctcagaact tggccacacc aataggattt atggcaacgt gggggacgtt
      841 acaggcggac agttaatgaa tgggagcttc tccatggacg ggacaggaca atcctatcag
      901 gacttgaggg atgggagccc ctatggaatc ccccagtctc catcctccat ctcgtccctg
      961 ccatcccacg ctcctttgct caatgggctg gattacacgg tggacagtaa tttgggcatc
     1021 attgcgcatg cagggcaggg agtaagccag acgctgagag ccatggctgg gggacccacc
     1081 tctgacatct ccacaggaag cagtgtaggc tatcccgact ttccaactag cccagcctct
     1141 tggctcgatg aaatggatcc tcctcctttt taa
//
LOCUS       XM_032650719            2094 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus T-box transcription factor 15 (TBX15),
            mRNA.
ACCESSION   XM_032650719
VERSION     XM_032650719.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2094
                     /gene="TBX15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 18 Proteins, and 35%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763236"
     CDS             286..2094
                     /gene="TBX15"
                     /codon_start=1
                     /product="T-box transcription factor TBX15"
                     /protein_id="XP_032506610.1"
                     /db_xref="GeneID:116763236"
                     /translation="MSERRRSAVALSSRAHAFSVEALIGSNKKRKLRDWEEKGLDLSM
                     EALSPAGPLGDTEDAAAHGLEPHPDSEQSTGSDSEVITERSSCSFDTHTDLGPGAAGP
                     VPAAMSSMEEIQVELQCADLWKRFHDIGTEMIITKAGRRMFPAMRVKITGLDPHQQYY
                     IAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHPDSLASGDTWMRQVVSFDK
                     LKLTNNELDDQGHIILHSMHKYQPRVHVIRKDFSSDLSPTKAVPVGDGVKTFNFPETV
                     FTTVTAYQNQQITRLKIDRNPFAKGFRDSGRNRTGLEAIMETYAFWRPPVRTLTFEDF
                     TTMQKQQGGSTGTSPTTSSTGTPSPSASSHLLSPSCSPPTFHLAPNTFNVGCRESQLC
                     NLNLSDYPPCARSNMAALQSYPGLSDSGYNRLQSGTASAPQPSETFMPQRTPSLISGI
                     PTPSSLPSNSKMEAYGGQLGSFPTSQFQYVMQAGNAASSSSSPHMFGGSHMQQSSYNA
                     FSLHNPYNLYGYNFPTSPRLAASPEKLSTSQSTLLCSSPSNGAFGERQYLPTGMEHGM
                     HMISPSANNQQATNTCDGRQYGAVPGSSSQMSVHMV"
     misc_feature    604..1197
                     /gene="TBX15"
                     /note="DNA-binding domain of T-box transcription factor 15
                     and related T-box proteins; Region: T-box_TBX15-like;
                     cd20198"
                     /db_xref="CDD:410324"
     misc_feature    order(703..708,805..807,943..945,952..954,991..996,
                     1126..1137,1150..1152,1159..1164,1171..1191)
                     /gene="TBX15"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410324"
ORIGIN      
        1 cgcctgcccg ggtgggtggg aagcaggact agggcgctca tgcagcgagc gggtagcgct
       61 cggggcgctc gttcctaggg gctggggcag ccagggacgt cggtccgagc cggcggcgga
      121 gggcgcaggg ggagggtgcc gaggacccgc aaagccgcct cctcagtctc ggccgcctcg
      181 ccgccgcctc tcccgggccc ggcccggcgg gcgctcggag cgtgagggct cgggctgctc
      241 cctgtgtagc ggggacgagc gggggccggg gtgcgggcgg ctaagatgag tgaaaggaga
      301 agatctgcag tcgccctgag ctcgcgagca catgccttct ccgttgaagc cttgatcggc
      361 tcaaataaaa agcggaagct gagagactgg gaggagaagg ggctggacct gtccatggag
      421 gcgctgagcc ccgcgggccc acttggagac acggaggacg cggccgcgca cggcctggag
      481 cctcacccgg attccgagca gagcactggt tcagactctg aggtgatcac tgagcggtct
      541 tcctgctcct ttgacactca cactgacctg ggccctggtg ctgcaggccc tgtgcctgct
      601 gccatgtctt ccatggagga gattcaggtg gagctgcagt gtgctgacct ctggaagagg
      661 ttccatgaca ttggaaccga gatgatcatc accaaagcag gcaggaggat gtttcctgcc
      721 atgagagtga agatcactgg cctggatcca caccagcagt actacatagc aatggacatt
      781 gtacctgtgg acaataaaag atacagatat gtgtatcaca gctccaagtg gatggtggct
      841 ggcaacgctg attcccctgt gcccccaaga gtttatatac accctgattc tctagcttct
      901 ggagatactt ggatgagaca ggtggtcagt ttcgacaaac tcaagctgac caacaatgaa
      961 ttggatgatc aaggacatat cattcttcac tctatgcaca aataccagcc tcgggttcat
     1021 gtgattcgca aggatttcag cagcgacctt tcacccacca aagccgttcc tgttggggat
     1081 ggagtgaaaa cattcaactt tcctgagacc gtgtttacca cagtcacagc ctatcagaac
     1141 cagcagatca ccagattaaa aattgacaga aacccttttg ctaaaggatt cagagattct
     1201 ggaagaaaca gaaccggact ggaagccatc atggagactt atgcattctg gagaccccct
     1261 gtccgcacac tcacctttga agatttcacc accatgcaaa agcagcaagg aggcagcaca
     1321 ggcacttccc caaccacctc cagcactggg acaccatccc cttcagcttc ttctcatctt
     1381 ttatctccat cctgttctcc tccaacattt catctggccc ccaacacttt caacgtgggc
     1441 tgccgagaga gccagctgtg taacctaaac ctctctgatt acccaccatg tgcccgaagc
     1501 aacatggctg ccttgcagag ctacccaggg ctgagtgaca gtggctacaa caggctccag
     1561 agtggcactg cttcagcccc tcagccctcc gaaaccttca tgccccagag gactccatcc
     1621 ctgatctcag gaatacctac tccttcctcg ttgcctagca acagcaagat ggaagcctac
     1681 ggtggccagc tggggtcctt ccccacttcc cagtttcagt atgtcatgca ggcaggcaat
     1741 gcagcgtcca gctcctcatc accacacatg tttgggggca gccacatgca gcagagctcc
     1801 tacaatgcct tctctctcca caacccttat aatctatacg gatacaattt ccccacttcc
     1861 ccaaggctag ctgcaagccc agaaaaactg agcacctctc aaagcacttt actctgttct
     1921 tctccttcca atggggcctt tggagagagg cagtacctgc ctacagggat ggagcatggc
     1981 atgcacatga ttagcccctc agccaataat cagcaggcga ctaacacctg tgatggccgg
     2041 cagtatgggg ccgtcccagg ctcctcctcc cagatgtccg ttcacatggt ttag
//
LOCUS       XM_032650731            5911 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class V (PIGV), transcript variant X1, mRNA.
ACCESSION   XM_032650731
VERSION     XM_032650731.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5911
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5911
                     /gene="PIGV"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763239"
     CDS             685..2166
                     /gene="PIGV"
                     /codon_start=1
                     /product="GPI mannosyltransferase 2 isoform X1"
                     /protein_id="XP_032506622.1"
                     /db_xref="GeneID:116763239"
                     /translation="MWPLDTSRKEVLGFAVSCRVLTLVLQALFNAIIPDHHAEAFSPP
                     RLAPSGSVDQLVESLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELL
                     RPLWGLLSLRSCLLISVASLNSLFSVLAALALHDLGCLVLRCPRQAFYGALLFCLSPA
                     NVFLAAGYSEALFALLTFSALGQLERGRSWTSGLLFALATGVRSNGLVNIGFLVHSQC
                     RGFFSSLMVRNPLRQLLKLMGSVFLSVLTLSLPFVLFQYYAYTQFCLPGPAYPIPKPL
                     LQLAVDKGYRIVEGNEPPWCSWELPLIYSYIQDIYWNVGFLRYYELKQVPNFLLAAPV
                     AILVAWATWTYVTTHPWLCLTLGMQRSKNGETPEKPEPGFLSPRVFVYLVHAAALLLF
                     GGLCMHVQVLTRFLCSSTPIVYWFSAHLLQDQEPLLRSLETVPWKPLSGDSPPGQKVP
                     RNSIMGLLYNWKTCSLVTRCILGYFLTYWLLGLLLHCNFLPWT"
     misc_feature    706..2163
                     /gene="PIGV"
                     /note="Mannosyltransferase (PIG-V); Region:
                     Mannosyl_trans2; pfam04188"
                     /db_xref="CDD:282094"
ORIGIN      
        1 gggctccgat tcaacaggtt ttcctatctg ctcagatagg gccctccctg ccctaagcgt
       61 agccagcaag agcatgcgct gtcactggac aagtcctggg ctgggagttg ggagaccctg
      121 gttgtaattc tggctctgaa agagcgcatc ccctttggca ggagtgacgg ctggtggaaa
      181 gattgatgtt tcagacaaaa aaaaaaaaaa aaaaattctc cttaaatata gccttgggag
      241 tgccacttga ccccagtgag cctcagtttc cacatccata aaatggcgat ggtaattaca
      301 cagggtctaa tgagatctct gacgtaaaaa ctctggagag tcttattact cacctctctg
      361 gggcatattt atctcacggg aaaatagagt aaaactagtt gctctgtaag tgtcctgcca
      421 gttcagaggg cctgtgattt cgtaaacggg ttgttgggaa gtgaagcccg caattagctg
      481 agagggagag ttcactggct ttatttttgt tttcacatgg tttacctgta aactaagtgt
      541 aggctacaag tcgtctgtga tcgctgggtc tagagcttga ctctggagaa aggaaaggaa
      601 gaatggaagc ctggtgaaga ggcagagaag cctgagggag ttcagccctg gcagcagccc
      661 ccctgaattc ctggtggtga gaggatgtgg cccctggaca catcccggaa agaggtcctg
      721 gggtttgcag tcagctgccg tgtcctgact ctggtgctgc aggctctctt caatgccatc
      781 atcccagacc atcatgcgga agccttctca cctcctcgcc tcgccccctc cggctctgtg
      841 gaccaacttg tggaaagtct cctgggcggc ctgtctcact gggatgctga acacttcctg
      901 ttcattgctg agcatggcta cctgtatgag cacaactttg ccttcttccc cggtttcccc
      961 ctggtcctgt tggtggggac tgaattgctg agacccctgt gggggctact gagcctacgg
     1021 agctgcctgc taatctcagt agcatcgctc aattccttgt tctccgtgct ggccgcactt
     1081 gcgcttcatg acctgggctg tctggttttg cgctgtcccc gccaggcttt ttatggagcg
     1141 ctgctcttct gcctcagccc cgccaatgtc ttcctggcgg ctggctactc agaagctttg
     1201 tttgccctcc tgacattcag cgccctgggg cagctggaaa ggggccgaag ctggactagt
     1261 ggactcctct ttgcccttgc cactggtgtg cgctccaacg ggctggtcaa cattggcttc
     1321 ctcgtgcatt ctcagtgccg aggctttttc tcttctctca tggtgcggaa tcctctgaga
     1381 cagctcttga agctgatggg ctctgtgttc ctgtcagtgc tcacacttag ccttcccttt
     1441 gtcctctttc aatattacgc ctatacccag ttctgtctgc caggcccagc ctaccccatt
     1501 cctaagccct tgctgcagtt agctgtggac aagggctacc gaatcgtaga gggaaatgag
     1561 ccgccttggt gctcctggga acttccccta atatacagct acatccagga tatctattgg
     1621 aatgttggct ttttgagata ctatgaactc aagcaggtgc ccaattttct actggctgca
     1681 ccagtggcta tactggttgc ctgggcaact tggacatatg tgaccactca tccttggctc
     1741 tgccttacac ttgggatgca aaggagcaag aacggagaga ccccagagaa gcctgagcct
     1801 gggttcctca gtcctcgggt gttcgtgtac ctggtccacg ctgcagcgct gctgctgttt
     1861 ggcggtctgt gcatgcatgt tcaggttctc accaggtttt tatgctcctc cactcctatt
     1921 gtgtactggt tttcagctca cttgcttcaa gatcaagaac cactgctgag atccctagag
     1981 actgtgcctt ggaagcctct ttcaggggac tccccaccag gacaaaaggt ccccagaaac
     2041 tctatcatgg gactcttgta caactggaaa acttgttctc tggtcacacg atgcattcta
     2101 ggctacttcc tgacttactg gctcctggga ctactcctgc attgcaactt cctaccttgg
     2161 acatgacttg gagacttagg ggacaggctt gaagcagact taaccagggt ctgaaagtac
     2221 aaatacatgc tggggctgcc tgtgctgccc tggaaccctt actctgcctg ttagaacctc
     2281 tctctccttg aaggttggtt aggaatggga gaagtgtgag cctctagaga ggcaccttct
     2341 ggtcctggct atggcagatt ttagggtagt aactattttc tctgtaaatg aagaaatctt
     2401 attccaggtc taaagcatac ctggatctgt cttgtcaatc agccatagca gagatagtct
     2461 taaacttacc acctacccac atgtaaattt aaatgtaaat tatttaaatg tgaatttcat
     2521 caaaggctgt agctgacaag ctggtcatag tccacacagt gatggcggag gcctggacag
     2581 tgtagcctaa gtacaatggg accatctttt ctaaatggga cattgtttct gattattttt
     2641 ttcatttgtt cacttattta tatgaaaaac cttacgaaga taggcaaatt aaacaacttt
     2701 tgattatatc tgcaattaat taccttttta ctttttaaat tattttattt tgttttactg
     2761 gctgcacggc ttgcgggagc ttagttccct gaccagggat taaacccggt ccacagcagt
     2821 gaaagcaccg agctggacca ccagtgaatt cccataaatt acccttttaa aaaaataata
     2881 caaattaagg gctgagaccc tgccacatac tctgcatcca cccttcattt ggatattaaa
     2941 ggtcaattga ggcaaaaaaa attaatacaa gttacttggg ggaaaaaagt catggtaaga
     3001 agaacattgc atgaggaggc aggaggcctg gattctggtc ctctcagtaa agccccactt
     3061 accagctgtg tgaccttggg agagttttca gagccttagt tacctcttct gaagctaggg
     3121 gaaaattaca ttatcctact ggaaaaaata tccagttctc ctcttttcag cactctgagg
     3181 agtaatttca gtgacgtttc ctctgaagga ggaagagcag tgacacttgg caaataaggc
     3241 tcccctgtcc tgtgtaagta agcctgccca ggggcaacta aatgttcaat gtgtgagcag
     3301 tgactggttt tcctgccctg cccgagtgcc tgtgctttct tgattggtag gtaagggtca
     3361 gatgagccaa cacagcagca ggaattgaca aattgtaggt aagtccaggg ttgaatgaaa
     3421 tggtatcttc ctggccccca tttggtaatg ggcttgactc tataattgta gtaaaatctt
     3481 gacccctgct gagctatttt ttctcattct ttgagccagg taagaggctc tgcatcatca
     3541 ccactctttc cccgtttgag ccaaaaattc caacaagcag aaacttcgaa atagatggat
     3601 tgacacgctc cctctgacca tgactgaaag ttaaacttgc cagctgaagg gaagctcctg
     3661 gctgagcccc agcaccctct attggagctc ctagtcagcc tggccaataa gcatttccca
     3721 tccatcgccc cagctttagc acagctgaga gaatttggtc cagagtcaag tgcttctgaa
     3781 aatgtacaca cagatcggga cagccctctg ccttctgcca agacacccga gtgcccttct
     3841 tggcaaaaga tgatcacccc tgccctagtg tccctccagt tggcagaaac tgttccctcc
     3901 ctcctcaccc acagctgcaa atctggggac ttccaccctg tgtgcaggaa gcgttgaggg
     3961 cctgattcag ctctttattg cagaggtagg agtactagat tgtttgcgct catggattga
     4021 cctctttgcc tcttttgggg gggataatca gagctgattg tttccctact ggaagaggtg
     4081 actcaaactc cgcagggtag ggggtgattt cactgctttg gcagtctcag cttaacgtta
     4141 ctagatctcg tcacccccag aaacaagtga tttcaaggac cggaaaccct ataaatgcga
     4201 acctctcatt tctcaactaa taccaaggaa ctaaatcact ctggtatttt gcaaagacca
     4261 ttctggttac agccgatcat agaggagtta agtgaggacc gcagctaggt ggacgtacct
     4321 ggtgtgacct ggagatggac acagttttct ctctgacctt ggagggatct agttctctaa
     4381 ggagctaagg aatgggctga ttttatggcc agcagctgtc cttttactat cctattaaca
     4441 gcctttaata accttcaaga gggatatgaa gggcccaagg caggaagctt cctgtttacc
     4501 ctgaggtcta acaatgctgc agctgggttg ggcgtctaca atttcagaga aaagtcattt
     4561 ccttctgaga cccagctaaa acagaaacca gacgctttat gtacctagaa gtagatgctt
     4621 ttttgttctt taatgaaggt gggaggagag ggagcgtttg acatggcttt accagtcccc
     4681 ctgaaaaaaa aaaaatcact tttcttgaac agaccctctc accctcctcc aaaaaatgta
     4741 gtgtgtgcag gctcgtggga tttgcaactg attgattctt tcagcaattg tttagtattg
     4801 cctgttttag gggtctaaag aagactcgcc ctgcttcctg tcctcaaata gctgcctgat
     4861 agagtttcta gcagaaacac aggaacgtta atcaaggaaa aaactaataa attctgggga
     4921 atgaagagat actttaactt cttgctcaat attctctact tgaacttttt atggtgagga
     4981 tgaattaaac ttttacttgt atgcttggga aaaggtaagt gtggtacaga gtaagttctc
     5041 tgtaaattca cacaagatag agatccctcc cagcttggaa tacttgaaaa gactttgtag
     5101 ggaatggcct ttgagttgga ctttgaagga cagtaggatt tgaagttaag ggcagagaat
     5161 gaatatagga agcaggaaat agaacaggac agggagagct cagtttgagt ggaactgagg
     5221 tattgtcatt tggtctaagc attgaaatca gccccaagcc cagctccact gtgtactagc
     5281 tgtgtaaagg tgagccagat actgaatctc taggcctctg ttcactcatc tgtaaaacat
     5341 ggataacact atctacctca tagatatgaa taataatatt atctatctca gagttaagtg
     5401 agttaaatga aaaatgttta gaacagtact aacaaaagaa tagctgcatt ttggacatgt
     5461 tgagtttaca atgccatcag cacattcata tgccaggaaa tgtggaccag gagactagga
     5521 gaggggtcag ggagccatcc acacagacat gataagtata gcagccatga tattggatga
     5581 gattgtcaac aagaaaaaat gtagagagag aaggagggcc tgtaaaacct tgagcaagtg
     5641 actcagcttc tctaaacctg ttttctcatc tctaaaatgg gggtgacatc acttaccaca
     5701 cagagtagtt atgaagatta aatgagataa agcgctagca tagcacgtag cacatagtaa
     5761 gaacttaatg aatggtagct attttttatc attatcattg tcatcgttgt tatcgtcgtt
     5821 gtcattaaaa aaccagaaac aaatattatc tgctgtacac aacattgtaa atcaactata
     5881 cttcaataaa aaaaaatttt ttttaattgc c
//
LOCUS       XM_032650739            5816 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class V (PIGV), transcript variant X2, mRNA.
ACCESSION   XM_032650739
VERSION     XM_032650739.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5816
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5816
                     /gene="PIGV"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763239"
     CDS             590..2071
                     /gene="PIGV"
                     /codon_start=1
                     /product="GPI mannosyltransferase 2 isoform X1"
                     /protein_id="XP_032506630.1"
                     /db_xref="GeneID:116763239"
                     /translation="MWPLDTSRKEVLGFAVSCRVLTLVLQALFNAIIPDHHAEAFSPP
                     RLAPSGSVDQLVESLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELL
                     RPLWGLLSLRSCLLISVASLNSLFSVLAALALHDLGCLVLRCPRQAFYGALLFCLSPA
                     NVFLAAGYSEALFALLTFSALGQLERGRSWTSGLLFALATGVRSNGLVNIGFLVHSQC
                     RGFFSSLMVRNPLRQLLKLMGSVFLSVLTLSLPFVLFQYYAYTQFCLPGPAYPIPKPL
                     LQLAVDKGYRIVEGNEPPWCSWELPLIYSYIQDIYWNVGFLRYYELKQVPNFLLAAPV
                     AILVAWATWTYVTTHPWLCLTLGMQRSKNGETPEKPEPGFLSPRVFVYLVHAAALLLF
                     GGLCMHVQVLTRFLCSSTPIVYWFSAHLLQDQEPLLRSLETVPWKPLSGDSPPGQKVP
                     RNSIMGLLYNWKTCSLVTRCILGYFLTYWLLGLLLHCNFLPWT"
     misc_feature    611..2068
                     /gene="PIGV"
                     /note="Mannosyltransferase (PIG-V); Region:
                     Mannosyl_trans2; pfam04188"
                     /db_xref="CDD:282094"
ORIGIN      
        1 gcgctgggga tccggcgcca gcttgggagc ctaggagttc tgggaggagg gaagttgtca
       61 aacggaggcc gagggaaatg aggcggaggc cgccgagaag cgaggagccc cgcccctccg
      121 ccatagcggc ctcccagggc cgcctcttcc gttacagcct cccgccctcc tctgccttcc
      181 ggccctaggc cgggccgggc ctcgccggcc ccctcgggag taacctctga gccgtggccc
      241 ctttggggag aggagatgcc caatcccctc ttgggactgt gtccgaaagg aaagggctag
      301 aacgggcttc ggacccgcct aggctggcag aaggcggccc ctgcctcgcg gcggccagca
      361 agacctctgg tcctgaggac cctgggtccg aacaccacca cccaccccgc gcccgctccc
      421 gaggacgtta gtcttacagc ccaggatgct acaagtcgtc tgtgatcgct gggtctagag
      481 cttgactctg gagaaaggaa aggaagaatg gaagcctggt gaagaggcag agaagcctga
      541 gggagttcag ccctggcagc agcccccctg aattcctggt ggtgagagga tgtggcccct
      601 ggacacatcc cggaaagagg tcctggggtt tgcagtcagc tgccgtgtcc tgactctggt
      661 gctgcaggct ctcttcaatg ccatcatccc agaccatcat gcggaagcct tctcacctcc
      721 tcgcctcgcc ccctccggct ctgtggacca acttgtggaa agtctcctgg gcggcctgtc
      781 tcactgggat gctgaacact tcctgttcat tgctgagcat ggctacctgt atgagcacaa
      841 ctttgccttc ttccccggtt tccccctggt cctgttggtg gggactgaat tgctgagacc
      901 cctgtggggg ctactgagcc tacggagctg cctgctaatc tcagtagcat cgctcaattc
      961 cttgttctcc gtgctggccg cacttgcgct tcatgacctg ggctgtctgg ttttgcgctg
     1021 tccccgccag gctttttatg gagcgctgct cttctgcctc agccccgcca atgtcttcct
     1081 ggcggctggc tactcagaag ctttgtttgc cctcctgaca ttcagcgccc tggggcagct
     1141 ggaaaggggc cgaagctgga ctagtggact cctctttgcc cttgccactg gtgtgcgctc
     1201 caacgggctg gtcaacattg gcttcctcgt gcattctcag tgccgaggct ttttctcttc
     1261 tctcatggtg cggaatcctc tgagacagct cttgaagctg atgggctctg tgttcctgtc
     1321 agtgctcaca cttagccttc cctttgtcct ctttcaatat tacgcctata cccagttctg
     1381 tctgccaggc ccagcctacc ccattcctaa gcccttgctg cagttagctg tggacaaggg
     1441 ctaccgaatc gtagagggaa atgagccgcc ttggtgctcc tgggaacttc ccctaatata
     1501 cagctacatc caggatatct attggaatgt tggctttttg agatactatg aactcaagca
     1561 ggtgcccaat tttctactgg ctgcaccagt ggctatactg gttgcctggg caacttggac
     1621 atatgtgacc actcatcctt ggctctgcct tacacttggg atgcaaagga gcaagaacgg
     1681 agagacccca gagaagcctg agcctgggtt cctcagtcct cgggtgttcg tgtacctggt
     1741 ccacgctgca gcgctgctgc tgtttggcgg tctgtgcatg catgttcagg ttctcaccag
     1801 gtttttatgc tcctccactc ctattgtgta ctggttttca gctcacttgc ttcaagatca
     1861 agaaccactg ctgagatccc tagagactgt gccttggaag cctctttcag gggactcccc
     1921 accaggacaa aaggtcccca gaaactctat catgggactc ttgtacaact ggaaaacttg
     1981 ttctctggtc acacgatgca ttctaggcta cttcctgact tactggctcc tgggactact
     2041 cctgcattgc aacttcctac cttggacatg acttggagac ttaggggaca ggcttgaagc
     2101 agacttaacc agggtctgaa agtacaaata catgctgggg ctgcctgtgc tgccctggaa
     2161 cccttactct gcctgttaga acctctctct ccttgaaggt tggttaggaa tgggagaagt
     2221 gtgagcctct agagaggcac cttctggtcc tggctatggc agattttagg gtagtaacta
     2281 ttttctctgt aaatgaagaa atcttattcc aggtctaaag catacctgga tctgtcttgt
     2341 caatcagcca tagcagagat agtcttaaac ttaccaccta cccacatgta aatttaaatg
     2401 taaattattt aaatgtgaat ttcatcaaag gctgtagctg acaagctggt catagtccac
     2461 acagtgatgg cggaggcctg gacagtgtag cctaagtaca atgggaccat cttttctaaa
     2521 tgggacattg tttctgatta tttttttcat ttgttcactt atttatatga aaaaccttac
     2581 gaagataggc aaattaaaca acttttgatt atatctgcaa ttaattacct ttttactttt
     2641 taaattattt tattttgttt tactggctgc acggcttgcg ggagcttagt tccctgacca
     2701 gggattaaac ccggtccaca gcagtgaaag caccgagctg gaccaccagt gaattcccat
     2761 aaattaccct tttaaaaaaa taatacaaat taagggctga gaccctgcca catactctgc
     2821 atccaccctt catttggata ttaaaggtca attgaggcaa aaaaaattaa tacaagttac
     2881 ttgggggaaa aaagtcatgg taagaagaac attgcatgag gaggcaggag gcctggattc
     2941 tggtcctctc agtaaagccc cacttaccag ctgtgtgacc ttgggagagt tttcagagcc
     3001 ttagttacct cttctgaagc taggggaaaa ttacattatc ctactggaaa aaatatccag
     3061 ttctcctctt ttcagcactc tgaggagtaa tttcagtgac gtttcctctg aaggaggaag
     3121 agcagtgaca cttggcaaat aaggctcccc tgtcctgtgt aagtaagcct gcccaggggc
     3181 aactaaatgt tcaatgtgtg agcagtgact ggttttcctg ccctgcccga gtgcctgtgc
     3241 tttcttgatt ggtaggtaag ggtcagatga gccaacacag cagcaggaat tgacaaattg
     3301 taggtaagtc cagggttgaa tgaaatggta tcttcctggc ccccatttgg taatgggctt
     3361 gactctataa ttgtagtaaa atcttgaccc ctgctgagct attttttctc attctttgag
     3421 ccaggtaaga ggctctgcat catcaccact ctttccccgt ttgagccaaa aattccaaca
     3481 agcagaaact tcgaaataga tggattgaca cgctccctct gaccatgact gaaagttaaa
     3541 cttgccagct gaagggaagc tcctggctga gccccagcac cctctattgg agctcctagt
     3601 cagcctggcc aataagcatt tcccatccat cgccccagct ttagcacagc tgagagaatt
     3661 tggtccagag tcaagtgctt ctgaaaatgt acacacagat cgggacagcc ctctgccttc
     3721 tgccaagaca cccgagtgcc cttcttggca aaagatgatc acccctgccc tagtgtccct
     3781 ccagttggca gaaactgttc cctccctcct cacccacagc tgcaaatctg gggacttcca
     3841 ccctgtgtgc aggaagcgtt gagggcctga ttcagctctt tattgcagag gtaggagtac
     3901 tagattgttt gcgctcatgg attgacctct ttgcctcttt tgggggggat aatcagagct
     3961 gattgtttcc ctactggaag aggtgactca aactccgcag ggtagggggt gatttcactg
     4021 ctttggcagt ctcagcttaa cgttactaga tctcgtcacc cccagaaaca agtgatttca
     4081 aggaccggaa accctataaa tgcgaacctc tcatttctca actaatacca aggaactaaa
     4141 tcactctggt attttgcaaa gaccattctg gttacagccg atcatagagg agttaagtga
     4201 ggaccgcagc taggtggacg tacctggtgt gacctggaga tggacacagt tttctctctg
     4261 accttggagg gatctagttc tctaaggagc taaggaatgg gctgatttta tggccagcag
     4321 ctgtcctttt actatcctat taacagcctt taataacctt caagagggat atgaagggcc
     4381 caaggcagga agcttcctgt ttaccctgag gtctaacaat gctgcagctg ggttgggcgt
     4441 ctacaatttc agagaaaagt catttccttc tgagacccag ctaaaacaga aaccagacgc
     4501 tttatgtacc tagaagtaga tgcttttttg ttctttaatg aaggtgggag gagagggagc
     4561 gtttgacatg gctttaccag tccccctgaa aaaaaaaaaa tcacttttct tgaacagacc
     4621 ctctcaccct cctccaaaaa atgtagtgtg tgcaggctcg tgggatttgc aactgattga
     4681 ttctttcagc aattgtttag tattgcctgt tttaggggtc taaagaagac tcgccctgct
     4741 tcctgtcctc aaatagctgc ctgatagagt ttctagcaga aacacaggaa cgttaatcaa
     4801 ggaaaaaact aataaattct ggggaatgaa gagatacttt aacttcttgc tcaatattct
     4861 ctacttgaac tttttatggt gaggatgaat taaactttta cttgtatgct tgggaaaagg
     4921 taagtgtggt acagagtaag ttctctgtaa attcacacaa gatagagatc cctcccagct
     4981 tggaatactt gaaaagactt tgtagggaat ggcctttgag ttggactttg aaggacagta
     5041 ggatttgaag ttaagggcag agaatgaata taggaagcag gaaatagaac aggacaggga
     5101 gagctcagtt tgagtggaac tgaggtattg tcatttggtc taagcattga aatcagcccc
     5161 aagcccagct ccactgtgta ctagctgtgt aaaggtgagc cagatactga atctctaggc
     5221 ctctgttcac tcatctgtaa aacatggata acactatcta cctcatagat atgaataata
     5281 atattatcta tctcagagtt aagtgagtta aatgaaaaat gtttagaaca gtactaacaa
     5341 aagaatagct gcattttgga catgttgagt ttacaatgcc atcagcacat tcatatgcca
     5401 ggaaatgtgg accaggagac taggagaggg gtcagggagc catccacaca gacatgataa
     5461 gtatagcagc catgatattg gatgagattg tcaacaagaa aaaatgtaga gagagaagga
     5521 gggcctgtaa aaccttgagc aagtgactca gcttctctaa acctgttttc tcatctctaa
     5581 aatgggggtg acatcactta ccacacagag tagttatgaa gattaaatga gataaagcgc
     5641 tagcatagca cgtagcacat agtaagaact taatgaatgg tagctatttt ttatcattat
     5701 cattgtcatc gttgttatcg tcgttgtcat taaaaaacca gaaacaaata ttatctgctg
     5761 tacacaacat tgtaaatcaa ctatacttca ataaaaaaaa atttttttta attgcc
//
LOCUS       XM_032650750            5821 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class V (PIGV), transcript variant X3, mRNA.
ACCESSION   XM_032650750
VERSION     XM_032650750.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5821
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5821
                     /gene="PIGV"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763239"
     CDS             595..2076
                     /gene="PIGV"
                     /codon_start=1
                     /product="GPI mannosyltransferase 2 isoform X1"
                     /protein_id="XP_032506641.1"
                     /db_xref="GeneID:116763239"
                     /translation="MWPLDTSRKEVLGFAVSCRVLTLVLQALFNAIIPDHHAEAFSPP
                     RLAPSGSVDQLVESLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELL
                     RPLWGLLSLRSCLLISVASLNSLFSVLAALALHDLGCLVLRCPRQAFYGALLFCLSPA
                     NVFLAAGYSEALFALLTFSALGQLERGRSWTSGLLFALATGVRSNGLVNIGFLVHSQC
                     RGFFSSLMVRNPLRQLLKLMGSVFLSVLTLSLPFVLFQYYAYTQFCLPGPAYPIPKPL
                     LQLAVDKGYRIVEGNEPPWCSWELPLIYSYIQDIYWNVGFLRYYELKQVPNFLLAAPV
                     AILVAWATWTYVTTHPWLCLTLGMQRSKNGETPEKPEPGFLSPRVFVYLVHAAALLLF
                     GGLCMHVQVLTRFLCSSTPIVYWFSAHLLQDQEPLLRSLETVPWKPLSGDSPPGQKVP
                     RNSIMGLLYNWKTCSLVTRCILGYFLTYWLLGLLLHCNFLPWT"
     misc_feature    616..2073
                     /gene="PIGV"
                     /note="Mannosyltransferase (PIG-V); Region:
                     Mannosyl_trans2; pfam04188"
                     /db_xref="CDD:282094"
ORIGIN      
        1 gcgctgggga tccggcgcca gcttgggagc ctaggagttc tgggaggagg gaagttgtca
       61 aacggaggcc gagggaaatg aggcggaggc cgccgagaag cgaggagccc cgcccctccg
      121 ccatagcggc ctcccagggc cgcctcttcc gttacagcct cccgccctcc tctgccttcc
      181 ggccctaggc cgggccgggc ctcgccggcc ccctcgggag taacctctga gccgtggccc
      241 ctttggggag aggagatgcc caatcccctc ttgggactgt gtccgaaagg aaagggctag
      301 aacgggcttc ggacccgcct aggctggcag aaggcggccc ctgcctcgcg gcggccagca
      361 agacctctgg tcctgaggac cctgggtccg aacaccacca cccaccccgc gcccgctccc
      421 gaggacgtta gtcttacagc ccaggattgt aggctacaag tcgtctgtga tcgctgggtc
      481 tagagcttga ctctggagaa aggaaaggaa gaatggaagc ctggtgaaga ggcagagaag
      541 cctgagggag ttcagccctg gcagcagccc ccctgaattc ctggtggtga gaggatgtgg
      601 cccctggaca catcccggaa agaggtcctg gggtttgcag tcagctgccg tgtcctgact
      661 ctggtgctgc aggctctctt caatgccatc atcccagacc atcatgcgga agccttctca
      721 cctcctcgcc tcgccccctc cggctctgtg gaccaacttg tggaaagtct cctgggcggc
      781 ctgtctcact gggatgctga acacttcctg ttcattgctg agcatggcta cctgtatgag
      841 cacaactttg ccttcttccc cggtttcccc ctggtcctgt tggtggggac tgaattgctg
      901 agacccctgt gggggctact gagcctacgg agctgcctgc taatctcagt agcatcgctc
      961 aattccttgt tctccgtgct ggccgcactt gcgcttcatg acctgggctg tctggttttg
     1021 cgctgtcccc gccaggcttt ttatggagcg ctgctcttct gcctcagccc cgccaatgtc
     1081 ttcctggcgg ctggctactc agaagctttg tttgccctcc tgacattcag cgccctgggg
     1141 cagctggaaa ggggccgaag ctggactagt ggactcctct ttgcccttgc cactggtgtg
     1201 cgctccaacg ggctggtcaa cattggcttc ctcgtgcatt ctcagtgccg aggctttttc
     1261 tcttctctca tggtgcggaa tcctctgaga cagctcttga agctgatggg ctctgtgttc
     1321 ctgtcagtgc tcacacttag ccttcccttt gtcctctttc aatattacgc ctatacccag
     1381 ttctgtctgc caggcccagc ctaccccatt cctaagccct tgctgcagtt agctgtggac
     1441 aagggctacc gaatcgtaga gggaaatgag ccgccttggt gctcctggga acttccccta
     1501 atatacagct acatccagga tatctattgg aatgttggct ttttgagata ctatgaactc
     1561 aagcaggtgc ccaattttct actggctgca ccagtggcta tactggttgc ctgggcaact
     1621 tggacatatg tgaccactca tccttggctc tgccttacac ttgggatgca aaggagcaag
     1681 aacggagaga ccccagagaa gcctgagcct gggttcctca gtcctcgggt gttcgtgtac
     1741 ctggtccacg ctgcagcgct gctgctgttt ggcggtctgt gcatgcatgt tcaggttctc
     1801 accaggtttt tatgctcctc cactcctatt gtgtactggt tttcagctca cttgcttcaa
     1861 gatcaagaac cactgctgag atccctagag actgtgcctt ggaagcctct ttcaggggac
     1921 tccccaccag gacaaaaggt ccccagaaac tctatcatgg gactcttgta caactggaaa
     1981 acttgttctc tggtcacacg atgcattcta ggctacttcc tgacttactg gctcctggga
     2041 ctactcctgc attgcaactt cctaccttgg acatgacttg gagacttagg ggacaggctt
     2101 gaagcagact taaccagggt ctgaaagtac aaatacatgc tggggctgcc tgtgctgccc
     2161 tggaaccctt actctgcctg ttagaacctc tctctccttg aaggttggtt aggaatggga
     2221 gaagtgtgag cctctagaga ggcaccttct ggtcctggct atggcagatt ttagggtagt
     2281 aactattttc tctgtaaatg aagaaatctt attccaggtc taaagcatac ctggatctgt
     2341 cttgtcaatc agccatagca gagatagtct taaacttacc acctacccac atgtaaattt
     2401 aaatgtaaat tatttaaatg tgaatttcat caaaggctgt agctgacaag ctggtcatag
     2461 tccacacagt gatggcggag gcctggacag tgtagcctaa gtacaatggg accatctttt
     2521 ctaaatggga cattgtttct gattattttt ttcatttgtt cacttattta tatgaaaaac
     2581 cttacgaaga taggcaaatt aaacaacttt tgattatatc tgcaattaat taccttttta
     2641 ctttttaaat tattttattt tgttttactg gctgcacggc ttgcgggagc ttagttccct
     2701 gaccagggat taaacccggt ccacagcagt gaaagcaccg agctggacca ccagtgaatt
     2761 cccataaatt acccttttaa aaaaataata caaattaagg gctgagaccc tgccacatac
     2821 tctgcatcca cccttcattt ggatattaaa ggtcaattga ggcaaaaaaa attaatacaa
     2881 gttacttggg ggaaaaaagt catggtaaga agaacattgc atgaggaggc aggaggcctg
     2941 gattctggtc ctctcagtaa agccccactt accagctgtg tgaccttggg agagttttca
     3001 gagccttagt tacctcttct gaagctaggg gaaaattaca ttatcctact ggaaaaaata
     3061 tccagttctc ctcttttcag cactctgagg agtaatttca gtgacgtttc ctctgaagga
     3121 ggaagagcag tgacacttgg caaataaggc tcccctgtcc tgtgtaagta agcctgccca
     3181 ggggcaacta aatgttcaat gtgtgagcag tgactggttt tcctgccctg cccgagtgcc
     3241 tgtgctttct tgattggtag gtaagggtca gatgagccaa cacagcagca ggaattgaca
     3301 aattgtaggt aagtccaggg ttgaatgaaa tggtatcttc ctggccccca tttggtaatg
     3361 ggcttgactc tataattgta gtaaaatctt gacccctgct gagctatttt ttctcattct
     3421 ttgagccagg taagaggctc tgcatcatca ccactctttc cccgtttgag ccaaaaattc
     3481 caacaagcag aaacttcgaa atagatggat tgacacgctc cctctgacca tgactgaaag
     3541 ttaaacttgc cagctgaagg gaagctcctg gctgagcccc agcaccctct attggagctc
     3601 ctagtcagcc tggccaataa gcatttccca tccatcgccc cagctttagc acagctgaga
     3661 gaatttggtc cagagtcaag tgcttctgaa aatgtacaca cagatcggga cagccctctg
     3721 ccttctgcca agacacccga gtgcccttct tggcaaaaga tgatcacccc tgccctagtg
     3781 tccctccagt tggcagaaac tgttccctcc ctcctcaccc acagctgcaa atctggggac
     3841 ttccaccctg tgtgcaggaa gcgttgaggg cctgattcag ctctttattg cagaggtagg
     3901 agtactagat tgtttgcgct catggattga cctctttgcc tcttttgggg gggataatca
     3961 gagctgattg tttccctact ggaagaggtg actcaaactc cgcagggtag ggggtgattt
     4021 cactgctttg gcagtctcag cttaacgtta ctagatctcg tcacccccag aaacaagtga
     4081 tttcaaggac cggaaaccct ataaatgcga acctctcatt tctcaactaa taccaaggaa
     4141 ctaaatcact ctggtatttt gcaaagacca ttctggttac agccgatcat agaggagtta
     4201 agtgaggacc gcagctaggt ggacgtacct ggtgtgacct ggagatggac acagttttct
     4261 ctctgacctt ggagggatct agttctctaa ggagctaagg aatgggctga ttttatggcc
     4321 agcagctgtc cttttactat cctattaaca gcctttaata accttcaaga gggatatgaa
     4381 gggcccaagg caggaagctt cctgtttacc ctgaggtcta acaatgctgc agctgggttg
     4441 ggcgtctaca atttcagaga aaagtcattt ccttctgaga cccagctaaa acagaaacca
     4501 gacgctttat gtacctagaa gtagatgctt ttttgttctt taatgaaggt gggaggagag
     4561 ggagcgtttg acatggcttt accagtcccc ctgaaaaaaa aaaaatcact tttcttgaac
     4621 agaccctctc accctcctcc aaaaaatgta gtgtgtgcag gctcgtggga tttgcaactg
     4681 attgattctt tcagcaattg tttagtattg cctgttttag gggtctaaag aagactcgcc
     4741 ctgcttcctg tcctcaaata gctgcctgat agagtttcta gcagaaacac aggaacgtta
     4801 atcaaggaaa aaactaataa attctgggga atgaagagat actttaactt cttgctcaat
     4861 attctctact tgaacttttt atggtgagga tgaattaaac ttttacttgt atgcttggga
     4921 aaaggtaagt gtggtacaga gtaagttctc tgtaaattca cacaagatag agatccctcc
     4981 cagcttggaa tacttgaaaa gactttgtag ggaatggcct ttgagttgga ctttgaagga
     5041 cagtaggatt tgaagttaag ggcagagaat gaatatagga agcaggaaat agaacaggac
     5101 agggagagct cagtttgagt ggaactgagg tattgtcatt tggtctaagc attgaaatca
     5161 gccccaagcc cagctccact gtgtactagc tgtgtaaagg tgagccagat actgaatctc
     5221 taggcctctg ttcactcatc tgtaaaacat ggataacact atctacctca tagatatgaa
     5281 taataatatt atctatctca gagttaagtg agttaaatga aaaatgttta gaacagtact
     5341 aacaaaagaa tagctgcatt ttggacatgt tgagtttaca atgccatcag cacattcata
     5401 tgccaggaaa tgtggaccag gagactagga gaggggtcag ggagccatcc acacagacat
     5461 gataagtata gcagccatga tattggatga gattgtcaac aagaaaaaat gtagagagag
     5521 aaggagggcc tgtaaaacct tgagcaagtg actcagcttc tctaaacctg ttttctcatc
     5581 tctaaaatgg gggtgacatc acttaccaca cagagtagtt atgaagatta aatgagataa
     5641 agcgctagca tagcacgtag cacatagtaa gaacttaatg aatggtagct attttttatc
     5701 attatcattg tcatcgttgt tatcgtcgtt gtcattaaaa aaccagaaac aaatattatc
     5761 tgctgtacac aacattgtaa atcaactata cttcaataaa aaaaaatttt ttttaattgc
     5821 c
//
LOCUS       XM_032650758            5433 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class V (PIGV), transcript variant X4, mRNA.
ACCESSION   XM_032650758
VERSION     XM_032650758.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5433
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5433
                     /gene="PIGV"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763239"
     CDS             207..1688
                     /gene="PIGV"
                     /codon_start=1
                     /product="GPI mannosyltransferase 2 isoform X1"
                     /protein_id="XP_032506649.1"
                     /db_xref="GeneID:116763239"
                     /translation="MWPLDTSRKEVLGFAVSCRVLTLVLQALFNAIIPDHHAEAFSPP
                     RLAPSGSVDQLVESLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELL
                     RPLWGLLSLRSCLLISVASLNSLFSVLAALALHDLGCLVLRCPRQAFYGALLFCLSPA
                     NVFLAAGYSEALFALLTFSALGQLERGRSWTSGLLFALATGVRSNGLVNIGFLVHSQC
                     RGFFSSLMVRNPLRQLLKLMGSVFLSVLTLSLPFVLFQYYAYTQFCLPGPAYPIPKPL
                     LQLAVDKGYRIVEGNEPPWCSWELPLIYSYIQDIYWNVGFLRYYELKQVPNFLLAAPV
                     AILVAWATWTYVTTHPWLCLTLGMQRSKNGETPEKPEPGFLSPRVFVYLVHAAALLLF
                     GGLCMHVQVLTRFLCSSTPIVYWFSAHLLQDQEPLLRSLETVPWKPLSGDSPPGQKVP
                     RNSIMGLLYNWKTCSLVTRCILGYFLTYWLLGLLLHCNFLPWT"
     misc_feature    228..1685
                     /gene="PIGV"
                     /note="Mannosyltransferase (PIG-V); Region:
                     Mannosyl_trans2; pfam04188"
                     /db_xref="CDD:282094"
ORIGIN      
        1 caggcgcggc cgctcggggc cccggatgga ggaactgtgg ttcgggcccc gcctgggagt
       61 gtaggctaca agtcgtctgt gatcgctggg tctagagctt gactctggag aaaggaaagg
      121 aagaatggaa gcctggtgaa gaggcagaga agcctgaggg agttcagccc tggcagcagc
      181 ccccctgaat tcctggtggt gagaggatgt ggcccctgga cacatcccgg aaagaggtcc
      241 tggggtttgc agtcagctgc cgtgtcctga ctctggtgct gcaggctctc ttcaatgcca
      301 tcatcccaga ccatcatgcg gaagccttct cacctcctcg cctcgccccc tccggctctg
      361 tggaccaact tgtggaaagt ctcctgggcg gcctgtctca ctgggatgct gaacacttcc
      421 tgttcattgc tgagcatggc tacctgtatg agcacaactt tgccttcttc cccggtttcc
      481 ccctggtcct gttggtgggg actgaattgc tgagacccct gtgggggcta ctgagcctac
      541 ggagctgcct gctaatctca gtagcatcgc tcaattcctt gttctccgtg ctggccgcac
      601 ttgcgcttca tgacctgggc tgtctggttt tgcgctgtcc ccgccaggct ttttatggag
      661 cgctgctctt ctgcctcagc cccgccaatg tcttcctggc ggctggctac tcagaagctt
      721 tgtttgccct cctgacattc agcgccctgg ggcagctgga aaggggccga agctggacta
      781 gtggactcct ctttgccctt gccactggtg tgcgctccaa cgggctggtc aacattggct
      841 tcctcgtgca ttctcagtgc cgaggctttt tctcttctct catggtgcgg aatcctctga
      901 gacagctctt gaagctgatg ggctctgtgt tcctgtcagt gctcacactt agccttccct
      961 ttgtcctctt tcaatattac gcctataccc agttctgtct gccaggccca gcctacccca
     1021 ttcctaagcc cttgctgcag ttagctgtgg acaagggcta ccgaatcgta gagggaaatg
     1081 agccgccttg gtgctcctgg gaacttcccc taatatacag ctacatccag gatatctatt
     1141 ggaatgttgg ctttttgaga tactatgaac tcaagcaggt gcccaatttt ctactggctg
     1201 caccagtggc tatactggtt gcctgggcaa cttggacata tgtgaccact catccttggc
     1261 tctgccttac acttgggatg caaaggagca agaacggaga gaccccagag aagcctgagc
     1321 ctgggttcct cagtcctcgg gtgttcgtgt acctggtcca cgctgcagcg ctgctgctgt
     1381 ttggcggtct gtgcatgcat gttcaggttc tcaccaggtt tttatgctcc tccactccta
     1441 ttgtgtactg gttttcagct cacttgcttc aagatcaaga accactgctg agatccctag
     1501 agactgtgcc ttggaagcct ctttcagggg actccccacc aggacaaaag gtccccagaa
     1561 actctatcat gggactcttg tacaactgga aaacttgttc tctggtcaca cgatgcattc
     1621 taggctactt cctgacttac tggctcctgg gactactcct gcattgcaac ttcctacctt
     1681 ggacatgact tggagactta ggggacaggc ttgaagcaga cttaaccagg gtctgaaagt
     1741 acaaatacat gctggggctg cctgtgctgc cctggaaccc ttactctgcc tgttagaacc
     1801 tctctctcct tgaaggttgg ttaggaatgg gagaagtgtg agcctctaga gaggcacctt
     1861 ctggtcctgg ctatggcaga ttttagggta gtaactattt tctctgtaaa tgaagaaatc
     1921 ttattccagg tctaaagcat acctggatct gtcttgtcaa tcagccatag cagagatagt
     1981 cttaaactta ccacctaccc acatgtaaat ttaaatgtaa attatttaaa tgtgaatttc
     2041 atcaaaggct gtagctgaca agctggtcat agtccacaca gtgatggcgg aggcctggac
     2101 agtgtagcct aagtacaatg ggaccatctt ttctaaatgg gacattgttt ctgattattt
     2161 ttttcatttg ttcacttatt tatatgaaaa accttacgaa gataggcaaa ttaaacaact
     2221 tttgattata tctgcaatta attacctttt tactttttaa attattttat tttgttttac
     2281 tggctgcacg gcttgcggga gcttagttcc ctgaccaggg attaaacccg gtccacagca
     2341 gtgaaagcac cgagctggac caccagtgaa ttcccataaa ttaccctttt aaaaaaataa
     2401 tacaaattaa gggctgagac cctgccacat actctgcatc cacccttcat ttggatatta
     2461 aaggtcaatt gaggcaaaaa aaattaatac aagttacttg ggggaaaaaa gtcatggtaa
     2521 gaagaacatt gcatgaggag gcaggaggcc tggattctgg tcctctcagt aaagccccac
     2581 ttaccagctg tgtgaccttg ggagagtttt cagagcctta gttacctctt ctgaagctag
     2641 gggaaaatta cattatccta ctggaaaaaa tatccagttc tcctcttttc agcactctga
     2701 ggagtaattt cagtgacgtt tcctctgaag gaggaagagc agtgacactt ggcaaataag
     2761 gctcccctgt cctgtgtaag taagcctgcc caggggcaac taaatgttca atgtgtgagc
     2821 agtgactggt tttcctgccc tgcccgagtg cctgtgcttt cttgattggt aggtaagggt
     2881 cagatgagcc aacacagcag caggaattga caaattgtag gtaagtccag ggttgaatga
     2941 aatggtatct tcctggcccc catttggtaa tgggcttgac tctataattg tagtaaaatc
     3001 ttgacccctg ctgagctatt ttttctcatt ctttgagcca ggtaagaggc tctgcatcat
     3061 caccactctt tccccgtttg agccaaaaat tccaacaagc agaaacttcg aaatagatgg
     3121 attgacacgc tccctctgac catgactgaa agttaaactt gccagctgaa gggaagctcc
     3181 tggctgagcc ccagcaccct ctattggagc tcctagtcag cctggccaat aagcatttcc
     3241 catccatcgc cccagcttta gcacagctga gagaatttgg tccagagtca agtgcttctg
     3301 aaaatgtaca cacagatcgg gacagccctc tgccttctgc caagacaccc gagtgccctt
     3361 cttggcaaaa gatgatcacc cctgccctag tgtccctcca gttggcagaa actgttccct
     3421 ccctcctcac ccacagctgc aaatctgggg acttccaccc tgtgtgcagg aagcgttgag
     3481 ggcctgattc agctctttat tgcagaggta ggagtactag attgtttgcg ctcatggatt
     3541 gacctctttg cctcttttgg gggggataat cagagctgat tgtttcccta ctggaagagg
     3601 tgactcaaac tccgcagggt agggggtgat ttcactgctt tggcagtctc agcttaacgt
     3661 tactagatct cgtcaccccc agaaacaagt gatttcaagg accggaaacc ctataaatgc
     3721 gaacctctca tttctcaact aataccaagg aactaaatca ctctggtatt ttgcaaagac
     3781 cattctggtt acagccgatc atagaggagt taagtgagga ccgcagctag gtggacgtac
     3841 ctggtgtgac ctggagatgg acacagtttt ctctctgacc ttggagggat ctagttctct
     3901 aaggagctaa ggaatgggct gattttatgg ccagcagctg tccttttact atcctattaa
     3961 cagcctttaa taaccttcaa gagggatatg aagggcccaa ggcaggaagc ttcctgttta
     4021 ccctgaggtc taacaatgct gcagctgggt tgggcgtcta caatttcaga gaaaagtcat
     4081 ttccttctga gacccagcta aaacagaaac cagacgcttt atgtacctag aagtagatgc
     4141 ttttttgttc tttaatgaag gtgggaggag agggagcgtt tgacatggct ttaccagtcc
     4201 ccctgaaaaa aaaaaaatca cttttcttga acagaccctc tcaccctcct ccaaaaaatg
     4261 tagtgtgtgc aggctcgtgg gatttgcaac tgattgattc tttcagcaat tgtttagtat
     4321 tgcctgtttt aggggtctaa agaagactcg ccctgcttcc tgtcctcaaa tagctgcctg
     4381 atagagtttc tagcagaaac acaggaacgt taatcaagga aaaaactaat aaattctggg
     4441 gaatgaagag atactttaac ttcttgctca atattctcta cttgaacttt ttatggtgag
     4501 gatgaattaa acttttactt gtatgcttgg gaaaaggtaa gtgtggtaca gagtaagttc
     4561 tctgtaaatt cacacaagat agagatccct cccagcttgg aatacttgaa aagactttgt
     4621 agggaatggc ctttgagttg gactttgaag gacagtagga tttgaagtta agggcagaga
     4681 atgaatatag gaagcaggaa atagaacagg acagggagag ctcagtttga gtggaactga
     4741 ggtattgtca tttggtctaa gcattgaaat cagccccaag cccagctcca ctgtgtacta
     4801 gctgtgtaaa ggtgagccag atactgaatc tctaggcctc tgttcactca tctgtaaaac
     4861 atggataaca ctatctacct catagatatg aataataata ttatctatct cagagttaag
     4921 tgagttaaat gaaaaatgtt tagaacagta ctaacaaaag aatagctgca ttttggacat
     4981 gttgagttta caatgccatc agcacattca tatgccagga aatgtggacc aggagactag
     5041 gagaggggtc agggagccat ccacacagac atgataagta tagcagccat gatattggat
     5101 gagattgtca acaagaaaaa atgtagagag agaaggaggg cctgtaaaac cttgagcaag
     5161 tgactcagct tctctaaacc tgttttctca tctctaaaat gggggtgaca tcacttacca
     5221 cacagagtag ttatgaagat taaatgagat aaagcgctag catagcacgt agcacatagt
     5281 aagaacttaa tgaatggtag ctatttttta tcattatcat tgtcatcgtt gttatcgtcg
     5341 ttgtcattaa aaaaccagaa acaaatatta tctgctgtac acaacattgt aaatcaacta
     5401 tacttcaata aaaaaaaatt ttttttaatt gcc
//
LOCUS       XM_032650769            5394 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class V (PIGV), transcript variant X5, mRNA.
ACCESSION   XM_032650769
VERSION     XM_032650769.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5394
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5394
                     /gene="PIGV"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763239"
     CDS             168..1649
                     /gene="PIGV"
                     /codon_start=1
                     /product="GPI mannosyltransferase 2 isoform X1"
                     /protein_id="XP_032506660.1"
                     /db_xref="GeneID:116763239"
                     /translation="MWPLDTSRKEVLGFAVSCRVLTLVLQALFNAIIPDHHAEAFSPP
                     RLAPSGSVDQLVESLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELL
                     RPLWGLLSLRSCLLISVASLNSLFSVLAALALHDLGCLVLRCPRQAFYGALLFCLSPA
                     NVFLAAGYSEALFALLTFSALGQLERGRSWTSGLLFALATGVRSNGLVNIGFLVHSQC
                     RGFFSSLMVRNPLRQLLKLMGSVFLSVLTLSLPFVLFQYYAYTQFCLPGPAYPIPKPL
                     LQLAVDKGYRIVEGNEPPWCSWELPLIYSYIQDIYWNVGFLRYYELKQVPNFLLAAPV
                     AILVAWATWTYVTTHPWLCLTLGMQRSKNGETPEKPEPGFLSPRVFVYLVHAAALLLF
                     GGLCMHVQVLTRFLCSSTPIVYWFSAHLLQDQEPLLRSLETVPWKPLSGDSPPGQKVP
                     RNSIMGLLYNWKTCSLVTRCILGYFLTYWLLGLLLHCNFLPWT"
     misc_feature    189..1646
                     /gene="PIGV"
                     /note="Mannosyltransferase (PIG-V); Region:
                     Mannosyl_trans2; pfam04188"
                     /db_xref="CDD:282094"
ORIGIN      
        1 ctgtggttcg ggccccgcct gggaggctac aagtcgtctg tgatcgctgg gtctagagct
       61 tgactctgga gaaaggaaag gaagaatgga agcctggtga agaggcagag aagcctgagg
      121 gagttcagcc ctggcagcag cccccctgaa ttcctggtgg tgagaggatg tggcccctgg
      181 acacatcccg gaaagaggtc ctggggtttg cagtcagctg ccgtgtcctg actctggtgc
      241 tgcaggctct cttcaatgcc atcatcccag accatcatgc ggaagccttc tcacctcctc
      301 gcctcgcccc ctccggctct gtggaccaac ttgtggaaag tctcctgggc ggcctgtctc
      361 actgggatgc tgaacacttc ctgttcattg ctgagcatgg ctacctgtat gagcacaact
      421 ttgccttctt ccccggtttc cccctggtcc tgttggtggg gactgaattg ctgagacccc
      481 tgtgggggct actgagccta cggagctgcc tgctaatctc agtagcatcg ctcaattcct
      541 tgttctccgt gctggccgca cttgcgcttc atgacctggg ctgtctggtt ttgcgctgtc
      601 cccgccaggc tttttatgga gcgctgctct tctgcctcag ccccgccaat gtcttcctgg
      661 cggctggcta ctcagaagct ttgtttgccc tcctgacatt cagcgccctg gggcagctgg
      721 aaaggggccg aagctggact agtggactcc tctttgccct tgccactggt gtgcgctcca
      781 acgggctggt caacattggc ttcctcgtgc attctcagtg ccgaggcttt ttctcttctc
      841 tcatggtgcg gaatcctctg agacagctct tgaagctgat gggctctgtg ttcctgtcag
      901 tgctcacact tagccttccc tttgtcctct ttcaatatta cgcctatacc cagttctgtc
      961 tgccaggccc agcctacccc attcctaagc ccttgctgca gttagctgtg gacaagggct
     1021 accgaatcgt agagggaaat gagccgcctt ggtgctcctg ggaacttccc ctaatataca
     1081 gctacatcca ggatatctat tggaatgttg gctttttgag atactatgaa ctcaagcagg
     1141 tgcccaattt tctactggct gcaccagtgg ctatactggt tgcctgggca acttggacat
     1201 atgtgaccac tcatccttgg ctctgcctta cacttgggat gcaaaggagc aagaacggag
     1261 agaccccaga gaagcctgag cctgggttcc tcagtcctcg ggtgttcgtg tacctggtcc
     1321 acgctgcagc gctgctgctg tttggcggtc tgtgcatgca tgttcaggtt ctcaccaggt
     1381 ttttatgctc ctccactcct attgtgtact ggttttcagc tcacttgctt caagatcaag
     1441 aaccactgct gagatcccta gagactgtgc cttggaagcc tctttcaggg gactccccac
     1501 caggacaaaa ggtccccaga aactctatca tgggactctt gtacaactgg aaaacttgtt
     1561 ctctggtcac acgatgcatt ctaggctact tcctgactta ctggctcctg ggactactcc
     1621 tgcattgcaa cttcctacct tggacatgac ttggagactt aggggacagg cttgaagcag
     1681 acttaaccag ggtctgaaag tacaaataca tgctggggct gcctgtgctg ccctggaacc
     1741 cttactctgc ctgttagaac ctctctctcc ttgaaggttg gttaggaatg ggagaagtgt
     1801 gagcctctag agaggcacct tctggtcctg gctatggcag attttagggt agtaactatt
     1861 ttctctgtaa atgaagaaat cttattccag gtctaaagca tacctggatc tgtcttgtca
     1921 atcagccata gcagagatag tcttaaactt accacctacc cacatgtaaa tttaaatgta
     1981 aattatttaa atgtgaattt catcaaaggc tgtagctgac aagctggtca tagtccacac
     2041 agtgatggcg gaggcctgga cagtgtagcc taagtacaat gggaccatct tttctaaatg
     2101 ggacattgtt tctgattatt tttttcattt gttcacttat ttatatgaaa aaccttacga
     2161 agataggcaa attaaacaac ttttgattat atctgcaatt aattaccttt ttacttttta
     2221 aattatttta ttttgtttta ctggctgcac ggcttgcggg agcttagttc cctgaccagg
     2281 gattaaaccc ggtccacagc agtgaaagca ccgagctgga ccaccagtga attcccataa
     2341 attacccttt taaaaaaata atacaaatta agggctgaga ccctgccaca tactctgcat
     2401 ccacccttca tttggatatt aaaggtcaat tgaggcaaaa aaaattaata caagttactt
     2461 gggggaaaaa agtcatggta agaagaacat tgcatgagga ggcaggaggc ctggattctg
     2521 gtcctctcag taaagcccca cttaccagct gtgtgacctt gggagagttt tcagagcctt
     2581 agttacctct tctgaagcta ggggaaaatt acattatcct actggaaaaa atatccagtt
     2641 ctcctctttt cagcactctg aggagtaatt tcagtgacgt ttcctctgaa ggaggaagag
     2701 cagtgacact tggcaaataa ggctcccctg tcctgtgtaa gtaagcctgc ccaggggcaa
     2761 ctaaatgttc aatgtgtgag cagtgactgg ttttcctgcc ctgcccgagt gcctgtgctt
     2821 tcttgattgg taggtaaggg tcagatgagc caacacagca gcaggaattg acaaattgta
     2881 ggtaagtcca gggttgaatg aaatggtatc ttcctggccc ccatttggta atgggcttga
     2941 ctctataatt gtagtaaaat cttgacccct gctgagctat tttttctcat tctttgagcc
     3001 aggtaagagg ctctgcatca tcaccactct ttccccgttt gagccaaaaa ttccaacaag
     3061 cagaaacttc gaaatagatg gattgacacg ctccctctga ccatgactga aagttaaact
     3121 tgccagctga agggaagctc ctggctgagc cccagcaccc tctattggag ctcctagtca
     3181 gcctggccaa taagcatttc ccatccatcg ccccagcttt agcacagctg agagaatttg
     3241 gtccagagtc aagtgcttct gaaaatgtac acacagatcg ggacagccct ctgccttctg
     3301 ccaagacacc cgagtgccct tcttggcaaa agatgatcac ccctgcccta gtgtccctcc
     3361 agttggcaga aactgttccc tccctcctca cccacagctg caaatctggg gacttccacc
     3421 ctgtgtgcag gaagcgttga gggcctgatt cagctcttta ttgcagaggt aggagtacta
     3481 gattgtttgc gctcatggat tgacctcttt gcctcttttg ggggggataa tcagagctga
     3541 ttgtttccct actggaagag gtgactcaaa ctccgcaggg tagggggtga tttcactgct
     3601 ttggcagtct cagcttaacg ttactagatc tcgtcacccc cagaaacaag tgatttcaag
     3661 gaccggaaac cctataaatg cgaacctctc atttctcaac taataccaag gaactaaatc
     3721 actctggtat tttgcaaaga ccattctggt tacagccgat catagaggag ttaagtgagg
     3781 accgcagcta ggtggacgta cctggtgtga cctggagatg gacacagttt tctctctgac
     3841 cttggaggga tctagttctc taaggagcta aggaatgggc tgattttatg gccagcagct
     3901 gtccttttac tatcctatta acagccttta ataaccttca agagggatat gaagggccca
     3961 aggcaggaag cttcctgttt accctgaggt ctaacaatgc tgcagctggg ttgggcgtct
     4021 acaatttcag agaaaagtca tttccttctg agacccagct aaaacagaaa ccagacgctt
     4081 tatgtaccta gaagtagatg cttttttgtt ctttaatgaa ggtgggagga gagggagcgt
     4141 ttgacatggc tttaccagtc cccctgaaaa aaaaaaaatc acttttcttg aacagaccct
     4201 ctcaccctcc tccaaaaaat gtagtgtgtg caggctcgtg ggatttgcaa ctgattgatt
     4261 ctttcagcaa ttgtttagta ttgcctgttt taggggtcta aagaagactc gccctgcttc
     4321 ctgtcctcaa atagctgcct gatagagttt ctagcagaaa cacaggaacg ttaatcaagg
     4381 aaaaaactaa taaattctgg ggaatgaaga gatactttaa cttcttgctc aatattctct
     4441 acttgaactt tttatggtga ggatgaatta aacttttact tgtatgcttg ggaaaaggta
     4501 agtgtggtac agagtaagtt ctctgtaaat tcacacaaga tagagatccc tcccagcttg
     4561 gaatacttga aaagactttg tagggaatgg cctttgagtt ggactttgaa ggacagtagg
     4621 atttgaagtt aagggcagag aatgaatata ggaagcagga aatagaacag gacagggaga
     4681 gctcagtttg agtggaactg aggtattgtc atttggtcta agcattgaaa tcagccccaa
     4741 gcccagctcc actgtgtact agctgtgtaa aggtgagcca gatactgaat ctctaggcct
     4801 ctgttcactc atctgtaaaa catggataac actatctacc tcatagatat gaataataat
     4861 attatctatc tcagagttaa gtgagttaaa tgaaaaatgt ttagaacagt actaacaaaa
     4921 gaatagctgc attttggaca tgttgagttt acaatgccat cagcacattc atatgccagg
     4981 aaatgtggac caggagacta ggagaggggt cagggagcca tccacacaga catgataagt
     5041 atagcagcca tgatattgga tgagattgtc aacaagaaaa aatgtagaga gagaaggagg
     5101 gcctgtaaaa ccttgagcaa gtgactcagc ttctctaaac ctgttttctc atctctaaaa
     5161 tgggggtgac atcacttacc acacagagta gttatgaaga ttaaatgaga taaagcgcta
     5221 gcatagcacg tagcacatag taagaactta atgaatggta gctatttttt atcattatca
     5281 ttgtcatcgt tgttatcgtc gttgtcatta aaaaaccaga aacaaatatt atctgctgta
     5341 cacaacattg taaatcaact atacttcaat aaaaaaaaat tttttttaat tgcc
//
LOCUS       XM_032650780            5859 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class V (PIGV), transcript variant X6, mRNA.
ACCESSION   XM_032650780
VERSION     XM_032650780.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5859
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5859
                     /gene="PIGV"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763239"
     CDS             685..1917
                     /gene="PIGV"
                     /codon_start=1
                     /product="GPI mannosyltransferase 2 isoform X2"
                     /protein_id="XP_032506671.1"
                     /db_xref="GeneID:116763239"
                     /translation="MWPLDTSRKEVLGFAVSCRVLTLVLQALFNAIIPDHHAEAFSPP
                     RLAPSGSVDQLVESLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELL
                     RPLWGLLSLRSCLLISVASLNSLFSVLAALALHDLGCLVLRCPRQAFYGALLFCLSPA
                     NVFLAAGYSEALFALLTFSALGQLERGRSWTSGLLFALATGVRSNGLVNIGFLVHSQC
                     RGFFSSLMVRNPLRQLLKLMGSVFLSVLTLSLPFVLFQYYAYTQFCLPGPAYPIPKPL
                     LQLAVDKGYRIVEGNEPPWCSWELPLIYSYIQDIYWNVGFLRYYELKQVPNFLLAAPV
                     AILVAWATWTYVTTHPWLCLTLGMQRSKNGETPEKPEPGFLSPRVFVYLVHAAALLLF
                     GGLCMHVQLTCFKIKNHC"
     misc_feature    706..1887
                     /gene="PIGV"
                     /note="Dolichyl-phosphate-mannose-protein
                     mannosyltransferase; Region: PMT_2; cl21590"
                     /db_xref="CDD:473917"
ORIGIN      
        1 gggctccgat tcaacaggtt ttcctatctg ctcagatagg gccctccctg ccctaagcgt
       61 agccagcaag agcatgcgct gtcactggac aagtcctggg ctgggagttg ggagaccctg
      121 gttgtaattc tggctctgaa agagcgcatc ccctttggca ggagtgacgg ctggtggaaa
      181 gattgatgtt tcagacaaaa aaaaaaaaaa aaaaattctc cttaaatata gccttgggag
      241 tgccacttga ccccagtgag cctcagtttc cacatccata aaatggcgat ggtaattaca
      301 cagggtctaa tgagatctct gacgtaaaaa ctctggagag tcttattact cacctctctg
      361 gggcatattt atctcacggg aaaatagagt aaaactagtt gctctgtaag tgtcctgcca
      421 gttcagaggg cctgtgattt cgtaaacggg ttgttgggaa gtgaagcccg caattagctg
      481 agagggagag ttcactggct ttatttttgt tttcacatgg tttacctgta aactaagtgt
      541 aggctacaag tcgtctgtga tcgctgggtc tagagcttga ctctggagaa aggaaaggaa
      601 gaatggaagc ctggtgaaga ggcagagaag cctgagggag ttcagccctg gcagcagccc
      661 ccctgaattc ctggtggtga gaggatgtgg cccctggaca catcccggaa agaggtcctg
      721 gggtttgcag tcagctgccg tgtcctgact ctggtgctgc aggctctctt caatgccatc
      781 atcccagacc atcatgcgga agccttctca cctcctcgcc tcgccccctc cggctctgtg
      841 gaccaacttg tggaaagtct cctgggcggc ctgtctcact gggatgctga acacttcctg
      901 ttcattgctg agcatggcta cctgtatgag cacaactttg ccttcttccc cggtttcccc
      961 ctggtcctgt tggtggggac tgaattgctg agacccctgt gggggctact gagcctacgg
     1021 agctgcctgc taatctcagt agcatcgctc aattccttgt tctccgtgct ggccgcactt
     1081 gcgcttcatg acctgggctg tctggttttg cgctgtcccc gccaggcttt ttatggagcg
     1141 ctgctcttct gcctcagccc cgccaatgtc ttcctggcgg ctggctactc agaagctttg
     1201 tttgccctcc tgacattcag cgccctgggg cagctggaaa ggggccgaag ctggactagt
     1261 ggactcctct ttgcccttgc cactggtgtg cgctccaacg ggctggtcaa cattggcttc
     1321 ctcgtgcatt ctcagtgccg aggctttttc tcttctctca tggtgcggaa tcctctgaga
     1381 cagctcttga agctgatggg ctctgtgttc ctgtcagtgc tcacacttag ccttcccttt
     1441 gtcctctttc aatattacgc ctatacccag ttctgtctgc caggcccagc ctaccccatt
     1501 cctaagccct tgctgcagtt agctgtggac aagggctacc gaatcgtaga gggaaatgag
     1561 ccgccttggt gctcctggga acttccccta atatacagct acatccagga tatctattgg
     1621 aatgttggct ttttgagata ctatgaactc aagcaggtgc ccaattttct actggctgca
     1681 ccagtggcta tactggttgc ctgggcaact tggacatatg tgaccactca tccttggctc
     1741 tgccttacac ttgggatgca aaggagcaag aacggagaga ccccagagaa gcctgagcct
     1801 gggttcctca gtcctcgggt gttcgtgtac ctggtccacg ctgcagcgct gctgctgttt
     1861 ggcggtctgt gcatgcatgt tcagctcact tgcttcaaga tcaagaacca ctgctgagat
     1921 ccctagagac tgtgccttgg aagcctcttt caggggactc cccaccagga caaaaggtcc
     1981 ccagaaactc tatcatggga ctcttgtaca actggaaaac ttgttctctg gtcacacgat
     2041 gcattctagg ctacttcctg acttactggc tcctgggact actcctgcat tgcaacttcc
     2101 taccttggac atgacttgga gacttagggg acaggcttga agcagactta accagggtct
     2161 gaaagtacaa atacatgctg gggctgcctg tgctgccctg gaacccttac tctgcctgtt
     2221 agaacctctc tctccttgaa ggttggttag gaatgggaga agtgtgagcc tctagagagg
     2281 caccttctgg tcctggctat ggcagatttt agggtagtaa ctattttctc tgtaaatgaa
     2341 gaaatcttat tccaggtcta aagcatacct ggatctgtct tgtcaatcag ccatagcaga
     2401 gatagtctta aacttaccac ctacccacat gtaaatttaa atgtaaatta tttaaatgtg
     2461 aatttcatca aaggctgtag ctgacaagct ggtcatagtc cacacagtga tggcggaggc
     2521 ctggacagtg tagcctaagt acaatgggac catcttttct aaatgggaca ttgtttctga
     2581 ttattttttt catttgttca cttatttata tgaaaaacct tacgaagata ggcaaattaa
     2641 acaacttttg attatatctg caattaatta cctttttact ttttaaatta ttttattttg
     2701 ttttactggc tgcacggctt gcgggagctt agttccctga ccagggatta aacccggtcc
     2761 acagcagtga aagcaccgag ctggaccacc agtgaattcc cataaattac ccttttaaaa
     2821 aaataataca aattaagggc tgagaccctg ccacatactc tgcatccacc cttcatttgg
     2881 atattaaagg tcaattgagg caaaaaaaat taatacaagt tacttggggg aaaaaagtca
     2941 tggtaagaag aacattgcat gaggaggcag gaggcctgga ttctggtcct ctcagtaaag
     3001 ccccacttac cagctgtgtg accttgggag agttttcaga gccttagtta cctcttctga
     3061 agctagggga aaattacatt atcctactgg aaaaaatatc cagttctcct cttttcagca
     3121 ctctgaggag taatttcagt gacgtttcct ctgaaggagg aagagcagtg acacttggca
     3181 aataaggctc ccctgtcctg tgtaagtaag cctgcccagg ggcaactaaa tgttcaatgt
     3241 gtgagcagtg actggttttc ctgccctgcc cgagtgcctg tgctttcttg attggtaggt
     3301 aagggtcaga tgagccaaca cagcagcagg aattgacaaa ttgtaggtaa gtccagggtt
     3361 gaatgaaatg gtatcttcct ggcccccatt tggtaatggg cttgactcta taattgtagt
     3421 aaaatcttga cccctgctga gctatttttt ctcattcttt gagccaggta agaggctctg
     3481 catcatcacc actctttccc cgtttgagcc aaaaattcca acaagcagaa acttcgaaat
     3541 agatggattg acacgctccc tctgaccatg actgaaagtt aaacttgcca gctgaaggga
     3601 agctcctggc tgagccccag caccctctat tggagctcct agtcagcctg gccaataagc
     3661 atttcccatc catcgcccca gctttagcac agctgagaga atttggtcca gagtcaagtg
     3721 cttctgaaaa tgtacacaca gatcgggaca gccctctgcc ttctgccaag acacccgagt
     3781 gcccttcttg gcaaaagatg atcacccctg ccctagtgtc cctccagttg gcagaaactg
     3841 ttccctccct cctcacccac agctgcaaat ctggggactt ccaccctgtg tgcaggaagc
     3901 gttgagggcc tgattcagct ctttattgca gaggtaggag tactagattg tttgcgctca
     3961 tggattgacc tctttgcctc ttttgggggg gataatcaga gctgattgtt tccctactgg
     4021 aagaggtgac tcaaactccg cagggtaggg ggtgatttca ctgctttggc agtctcagct
     4081 taacgttact agatctcgtc acccccagaa acaagtgatt tcaaggaccg gaaaccctat
     4141 aaatgcgaac ctctcatttc tcaactaata ccaaggaact aaatcactct ggtattttgc
     4201 aaagaccatt ctggttacag ccgatcatag aggagttaag tgaggaccgc agctaggtgg
     4261 acgtacctgg tgtgacctgg agatggacac agttttctct ctgaccttgg agggatctag
     4321 ttctctaagg agctaaggaa tgggctgatt ttatggccag cagctgtcct tttactatcc
     4381 tattaacagc ctttaataac cttcaagagg gatatgaagg gcccaaggca ggaagcttcc
     4441 tgtttaccct gaggtctaac aatgctgcag ctgggttggg cgtctacaat ttcagagaaa
     4501 agtcatttcc ttctgagacc cagctaaaac agaaaccaga cgctttatgt acctagaagt
     4561 agatgctttt ttgttcttta atgaaggtgg gaggagaggg agcgtttgac atggctttac
     4621 cagtccccct gaaaaaaaaa aaatcacttt tcttgaacag accctctcac cctcctccaa
     4681 aaaatgtagt gtgtgcaggc tcgtgggatt tgcaactgat tgattctttc agcaattgtt
     4741 tagtattgcc tgttttaggg gtctaaagaa gactcgccct gcttcctgtc ctcaaatagc
     4801 tgcctgatag agtttctagc agaaacacag gaacgttaat caaggaaaaa actaataaat
     4861 tctggggaat gaagagatac tttaacttct tgctcaatat tctctacttg aactttttat
     4921 ggtgaggatg aattaaactt ttacttgtat gcttgggaaa aggtaagtgt ggtacagagt
     4981 aagttctctg taaattcaca caagatagag atccctccca gcttggaata cttgaaaaga
     5041 ctttgtaggg aatggccttt gagttggact ttgaaggaca gtaggatttg aagttaaggg
     5101 cagagaatga atataggaag caggaaatag aacaggacag ggagagctca gtttgagtgg
     5161 aactgaggta ttgtcatttg gtctaagcat tgaaatcagc cccaagccca gctccactgt
     5221 gtactagctg tgtaaaggtg agccagatac tgaatctcta ggcctctgtt cactcatctg
     5281 taaaacatgg ataacactat ctacctcata gatatgaata ataatattat ctatctcaga
     5341 gttaagtgag ttaaatgaaa aatgtttaga acagtactaa caaaagaata gctgcatttt
     5401 ggacatgttg agtttacaat gccatcagca cattcatatg ccaggaaatg tggaccagga
     5461 gactaggaga ggggtcaggg agccatccac acagacatga taagtatagc agccatgata
     5521 ttggatgaga ttgtcaacaa gaaaaaatgt agagagagaa ggagggcctg taaaaccttg
     5581 agcaagtgac tcagcttctc taaacctgtt ttctcatctc taaaatgggg gtgacatcac
     5641 ttaccacaca gagtagttat gaagattaaa tgagataaag cgctagcata gcacgtagca
     5701 catagtaaga acttaatgaa tggtagctat tttttatcat tatcattgtc atcgttgtta
     5761 tcgtcgttgt cattaaaaaa ccagaaacaa atattatctg ctgtacacaa cattgtaaat
     5821 caactatact tcaataaaaa aaaatttttt ttaattgcc
//
LOCUS       XM_032650806           12302 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spen family transcriptional repressor
            (SPEN), transcript variant X1, mRNA.
ACCESSION   XM_032650806
VERSION     XM_032650806.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12302
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..12302
                     /gene="SPEN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763253"
     CDS             345..11249
                     /gene="SPEN"
                     /codon_start=1
                     /product="msx2-interacting protein isoform X1"
                     /protein_id="XP_032506697.1"
                     /db_xref="GeneID:116763253"
                     /translation="MVRETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSE
                     GGVAAFVDFVDIKSAQKAHNSVNKMGDRDLRTDYNEPGTIPSAARGLDDTVSIASRSR
                     EVSGFRGGGGGPAYGPPPSLHAREGRYERRLDGASDNRERAYEHSAYGHHERGTGGFD
                     RTRHYDQDYYRDPRERTLQHGLYYTSRSRSPNRFDAHDPRYEPRAREQFTLPSVVHRD
                     IYRDDITREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPARSPSGSGSRS
                     RSSSSDSISSSSSTSSDSTDSSSSSSDDSPARSVQSAAVPAPTSQLLSSLEKDEPRKS
                     FGIKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKA
                     LTASKGKLFFGMQIEVTAWIGPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTT
                     YHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKL
                     GFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQ
                     AAVKETKGRKIGGNKIKVDFANRESQLAFYHCMEKSGQDIRDFYEMLAERREERRGSY
                     DYSQDRTYYENVRTPGTYAEDSRRDYPARGREFYSEWETYQGDYYESRYYDDPREYRD
                     YRNDPYEQDIREYSYRQRERERERERFESDRDRDHERRPIERSQSPVHLRRPQSPGAS
                     PSQSERLPSDSERRIYSRSSDRSGSCSSLSPPRYDKLDKPRLERYTKNEKTDKERTFD
                     PERVERERRLIRKEKVEKDKTDKQKRKGKVHSPSSQSSETDQENEREQSPEKSRSSNK
                     LSREKADKEGVAKNRLELMPCVVLTRVKEKEGKVIDHTPLEKLKAKLDNDTVKSSALD
                     QKLQVSQTEPAKSELSKLESVRMKAPKERGLSSHIEVVDKEGRPKPRKHLKPEQTVDG
                     VSAVDLEKLEARKRRFADSNLKAERQKSDVKKSSPEMEDARVLLKKQPDISSRDVILL
                     REGESEKKTVRKEILKRESKKIKLDRLNAVPSSRECQELASISVGTVSRPNSDLQARL
                     REPVGESVENQEIQSKKPTPSKPPLKQLELLDDQGPEREDNRKNYCSLRDEPLECKSG
                     QDKPHSVNTEEKIGIDIDHTQSYRKQMEQSRRKQQMEMEIAKSEKFGSPKKDVDEYER
                     RSLVHEVGKPPQDVTDDSPPSKKKRMDHVDFDICTKRERNYRSSRQISEDSERTGGSP
                     SVRHGSFHEEDDPVGSPRVMSIKGSPKVDEKGLPYSNITVREESLKFNPYDSSRREQM
                     ADMAKIKLSVLNPEDELSRWDSQMKQDASRFDVSFPNSIIKRDSLRKRSVRDLEPGEV
                     PSDSDEDGEHKSHSPRASALFESSRLSFLLRDREDKLRERDERLSSSLERNKFYSFAL
                     DKTITPDTKALLERAKSLSSSREENWSFLDWDSRFANFRNNKDKEKVDSAPRPIPSWY
                     MKKKKIRTDSEGKMDDKKDDHKEEEQERQELFASRFLHSSIFEQDSKRLQHLERKDEE
                     SDFVSGRLYGRQTSDGVNSTTDLIQEPVVLFHSRFMELTRMQQKEKEKDQKPKEVEKQ
                     EDTEDHPKTSESASENKESELKTPPSIGPPSVTVVAPESAASSLEKTAAERTGEVPSV
                     TEEKTTQPASVSEEAKPVSDLTPIAVEQPEQVDLPPGVDTRKDVAETPLVVEENSSVD
                     QLPYLDAKPPTPGASFSQVEISVDPEPDSTQTLSKPTQKPEEADEPKVEKPDSAANVE
                     PNASQNAEDVHEVPPPATEGVEVDPPVAAKDKKPNKSKRSKTPIQAAAASIVEKPVTR
                     KSERIDREKLKRSSSPRGEAQKLLELKMEAEKITRAASKNSSADPEHPEPSLPLSRTR
                     RRNVRSVYATVGDHESRSPVKEPVEQPRVTRKRLERELQEAAVVPTTPRRGRPPKARR
                     RADEDDETEAKEPVETVKPAEGWRSPRSQKVAAGVQQGKKGKNEPKVDAERPEATTEV
                     SPQLNVKENNTKSKTDKEEAGSEQKRDRKEISTDKNPPETPPVEVVEKKTAPEKNSKS
                     KRGRSRNSRSAVDKSANLRNVEATVSPGAAAGPAGLPAEETAAVAAVSPEKSESPQEE
                     ASLSLRLSSEPADLDKEPEKEDGSASKPSPEANQLAKQMELEQAVENIEKLAETSTPT
                     AFKAAAADAPERLSTEDRDKPAHQASETELAAAIGSIINDISGEPENFPAPPPYPAES
                     QTDLQSPEEGMEPETDEAVSGILETEAATESSRPPGSAPDPSAGPADTKEARENSSET
                     SHPVPQVKGSKEAEVTLARKDKGRQKTTRSRRKRNTNKKTGGATETHVSEPDQVQSKS
                     PATSEGATTQPPETPQEEKQSDKPQSTPPESCASDPSKTTSQGNLSQESSVEEKTPTK
                     ASALPDLPPASQPAPVDDEPRARFKVHSIIESDPVTPPSDSSMPTPPIPSVTIAKLPP
                     PVAAGGIPHQSPPTKVTEWITRQEEPRAQSTPSPALPPDTKASDIDTSSSTLRKILMD
                     PKYVSATGVTSTSVTTAIAEPVSAAPCLHEALPPPVESKKPLLEEKAAAPVTNTSDTQ
                     VSEVPVATDKEKVTPVIAPKITSVISRMPVSIDLENSQKITLAKPAPQTLTGLVSALT
                     GLVNVSLVPVNALAGPVNALKGPVKGSVATLKGLVNTPAGPVNVLKGPVNVLTGPVNV
                     LTAPVNAATGTVNTAAGAVTVSAGAVTAASGVVTATTTGAVTVAGAVIAPSAKCRQRS
                     GTNDNSRFHPGSMSVIDDRPADTGSGAGLRVNTSEGVVLLSYSGQKTEGPQRISAKIS
                     QIPPASAMDIEFQQSVSKSQVKPDSVMPSQPPPKGPQAPSGYANVATHSTLVLTAQTY
                     NASPVISSVKADRPSLEKPEPIHLSVSTPVTQGGTVKVLTQGINTPPVLVHNQLVLTP
                     SIVTTNKKLADPVTLKIETKVLQPANLGSTLTPHHPPALPSKLPAEVNHVTSGPSTPT
                     DRTVSHLAATKPDVHSPRPSGPAPSPFPRACHPSSTTSAALSTNATVMLAAGIPVPQF
                     ISSIHPEQSVIMPPHSITQTVSLSHLSQGEVRMNTPTLPSITYSIRPETLHSPRAPLQ
                     PQQIEVRAPQPATAGVPALASQHPPEEEVHYHLPVARAAAPVQSEVLVMQSEYRLHPY
                     TVPRDVRIMVHPHVTAVSEQPRAADGVVKVPPASKAPQQPGKEAAKMADAKAAPAPAP
                     APHGEARILTVTPSNQLQGLPLTPPVVVTHGVQIVHSSGELFQEYRYGDVRTYHSPAQ
                     LAHTPFPAAASIGLPSRTKAPAQGLPPEGEPSQPLQPAQSAQPAQSTQTSQLSQPGQP
                     PSSKMPPVSQEAKGTQTGVEQPRLPNVPGNRPAEPHAQVHRAQAETSQTSYPSPVSVS
                     MKPDLPAPLPAQAAPKQPLFVPTPSGPSPPPGLALPHTETQPAPKQDSSPHLTSQRPV
                     DMVQLLKKYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLSEGGPPLRIAQRMR
                     LEASQLEGVARRMTVETDYCLLLALPCGRDQEDVVSQTESLKAAFITYLQAKQAAGII
                     NVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLLASISHISPHLMIVIASV"
     misc_feature    363..587
                     /gene="SPEN"
                     /note="RNA recognition motif 1 (RRM1) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM1_SHARP; cd12348"
                     /db_xref="CDD:409784"
     misc_feature    1350..1571
                     /gene="SPEN"
                     /note="RNA recognition motif 2 (RRM2) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM2_SHARP; cd12349"
                     /db_xref="CDD:409785"
     misc_feature    1650..1871
                     /gene="SPEN"
                     /note="RNA recognition motif 3 (RRM3) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM3_SHARP; cd12350"
                     /db_xref="CDD:409786"
     misc_feature    1872..2102
                     /gene="SPEN"
                     /note="RNA recognition motif 4 (RRM4) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM4_SHARP; cd12351"
                     /db_xref="CDD:409787"
     misc_feature    <2241..4103
                     /gene="SPEN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <5109..6620
                     /gene="SPEN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <6975..8279
                     /gene="SPEN"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <9165..10700
                     /gene="SPEN"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    10764..11246
                     /gene="SPEN"
                     /note="SPOC (Spen paralog and ortholog C-terminal) domain
                     found in SMART/HDAC1-associated repressor protein (SHARP)
                     and similar proteins; Region: SPOC_SHARP; cd21543"
                     /db_xref="CDD:439206"
     misc_feature    order(10794..10805,10896..10916,10950..10952,11058..11063,
                     11070..11072,11079..11087,11127..11129,11133..11135)
                     /gene="SPEN"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:439206"
ORIGIN      
        1 gccacagcgc cagctccgtc gtagtcgctg ccgcccgggt ctcgctcgcc cctcctaccc
       61 gctccccctc ccgccgcctc ccgagcgcat gcgccgccgg agcgcggggg tcggcttcgg
      121 gtgtgtggtg gcggcagagc ggagctgcga ggcccgagag tcagaacctg ggggagaggg
      181 atggtctctg cacggggggg agccggagga gccgccgccg ctgccgacgc caccgccgca
      241 gccgccgccg ccgccgcctc ggcgcccgcc tcccggcgct gacgggctcg tacgaagccg
      301 gcgaggggga accagcacca gcggtcgccg gcacaccgcc cagcatggtc cgggaaacca
      361 ggcacctctg ggtgggcaac ttaccggaga atgtgcggga agagaagatc atcgagcatt
      421 tcaaacgata tggccgcgtg gaaagtgtca aaattctccc caagaggggt tctgaaggag
      481 gagtggctgc ctttgtggat tttgtggaca tcaaaagtgc acagaaggct cacaactcag
      541 tcaacaaaat gggagataga gacctacgca cggattataa tgaaccaggc accattccga
      601 gcgctgctcg gggattggat gatacagttt ccatagcatc tcgtagtaga gaggtttctg
      661 ggttcagagg aggtggtgga gggcctgctt atggcccccc accatcactt catgcacgag
      721 aaggacgtta tgagcggaga cttgatgggg cttcagataa cagggagcgt gcttatgaac
      781 atagtgccta tggacaccat gaacggggga cgggaggatt tgatcggacg agacattacg
      841 atcaggatta ctatagagat cctcgcgagc ggactttaca acatgggctc tattatactt
      901 ctcggagtcg aagtccaaac cgttttgatg ctcatgatcc ccgatacgaa cctagggctc
      961 gggagcagtt tacactgccc agtgtggtac acagggatat ctacagggat gatattaccc
     1021 gggaggtacg aggcagaagg ccagagcgga attaccagca cagcaggagt cgctcaccac
     1081 attcatccca gtctagaaat cagtctcctc agaggctggc tagccaagcg tctagacccg
     1141 caaggtcccc tagcggcagc ggctctagga gtagatcctc cagtagtgat tcaatcagca
     1201 gcagcagtag taccagcagt gacagcactg attccagcag tagttcaagt gatgactctc
     1261 cagcccgatc agttcaatct gcagcagtcc cagcacccac ttcccagttg ctttcatccc
     1321 tggaaaaaga tgagccgcgt aaaagttttg ggatcaaggt tcagaatctt ccagtacgct
     1381 ccacagatac aagtctcaaa gatggccttt tccatgaatt taagaaattt ggaaaggtga
     1441 cttcagtgca gatacatgga acttcagaag aaaggtatgg tctggtattc ttccggcagc
     1501 aggaggacca agaaaaagca ttgactgcat caaaaggaaa acttttcttc ggcatgcaga
     1561 ttgaagtaac agcatggata gggccagaaa cagaaagtga aaatgaattt cgccctttgg
     1621 atgaaaggat agatgaattt caccccaaag caacaagaac tctctttatt ggtaaccttg
     1681 aaaaaaccac tacttatcat gatcttcgca acatcttcca acgctttgga gaaattgtgg
     1741 atattgatat taagaaagta aatggagttc ctcagtatgc gttcttgcaa tactgtgata
     1801 ttgccagcgt ttgtaaggct attaagaaga tggatgggga ataccttgga aataatcgtc
     1861 tcaagctggg ttttggaaag agcatgccta caaactgtgt gtggttagat gggctttctt
     1921 caaacgtatc ggatcaatat ttaacacgac atttctgccg atatgggcct gtggtgaagg
     1981 tggtgtttga ccgcttaaaa ggcatggccc tggttctcta caatgaaatt gaatatgcac
     2041 aagcagctgt aaaagagacc aaggggagga aaatcggtgg gaataaaatt aaggtggatt
     2101 ttgcaaatcg ggaaagtcag ctggcatttt atcactgtat ggaaaaatct ggtcaagata
     2161 tcagagactt ctatgaaatg ttagcagaaa gaagagaaga aagaagggga tcgtatgact
     2221 atagccaaga tcgtacatat tatgagaatg ttcgtactcc aggcacatat gctgaggatt
     2281 ccagacggga ctatccagct cgagggagag aattttattc agaatgggaa acttaccaag
     2341 gagactacta tgaatcacga tattacgatg atccccggga atatagggat tacagaaatg
     2401 atccttatga acaagatatt cgggaataca gttacaggca aagggaacga gaaagagaac
     2461 gtgaaagatt tgagtctgac cgggacagag accacgagag gaggccaatt gaacgcagtc
     2521 agagtccagt tcacttgcga cgcccacaga gtcctggagc atcaccctca cagtcagaga
     2581 gattgcctag tgattccgag aggaggattt acagccgatc ctcggaccgg agtggaagct
     2641 gtagctcact ttcccctcca agatatgata aacttgacaa acctcgtttg gaacgctata
     2701 caaaaaacga aaagacagat aaagaacgaa cttttgatcc tgagagagtg gaaagagaga
     2761 gacgtttaat aaggaaggaa aaggtggaga aggacaaaac tgacaagcag aaacggaaag
     2821 gaaaagttca ttcccctagt tctcagtctt cagaaacaga ccaagaaaat gagagagaac
     2881 aaagccctga aaaatcaagg agttctaata aactgagcag agagaaagct gacaaagaag
     2941 gagtagcaaa aaaccgcttg gaactcatgc cttgtgtggt tttgactcga gtgaaagaaa
     3001 aagaggggaa ggttattgac catactcctt tggaaaagct gaaagccaag cttgataatg
     3061 acactgtcaa gtcttctgcc ttagatcaga aacttcaggt ctctcagaca gagcctgcaa
     3121 aatctgagtt gtctaaacta gaatctgtta gaatgaaagc gccaaaggaa agggggcttt
     3181 caagccacat agaagtggta gataaggaag gcaggcctaa acccaggaag cacctaaaac
     3241 cagagcaaac tgttgatggg gtaagtgctg tggatctgga gaagctggaa gcgaggaaaa
     3301 ggcgttttgc agattccaat ttgaaagcag aaaggcaaaa atcagatgtt aagaaaagta
     3361 gcccagagat ggaagatgct cgggtgcttt taaagaaaca gcctgacata tcatctagag
     3421 atgtcattct actgagggaa ggagagtctg agaaaaagac ggtgaggaaa gaaattctta
     3481 aaagagaatc taaaaaaatc aaactagaca gacttaatgc tgttcccagc tccagagagt
     3541 gtcaggagct tgccagcatt tctgtgggga ctgtatcaag gcccaactca gatctgcaag
     3601 caaggctgag agaaccagta ggtgaatctg tggaaaacca agaaatccag tccaaaaaac
     3661 ccactccttc aaaaccacca cttaaacagc tggagctatt agatgatcaa ggaccagaga
     3721 gagaagataa taggaaaaac tattgcagtc ttcgtgatga accacttgaa tgtaaatcag
     3781 gccaagataa accacattca gtaaatactg aagaaaaaat tggcattgat attgatcaca
     3841 cgcagagtta ccgaaaacaa atggagcaga gtcgtagaaa acagcagatg gagatggaaa
     3901 tagccaagtc cgaaaagttt ggcagtccta aaaaagatgt ggatgaatat gaaagacgta
     3961 gtcttgttca cgaggtcggc aaaccccctc aggatgtcac tgacgactct cctcccagca
     4021 aaaagaagag gatggaccat gttgattttg acatctgcac caagagagaa cggaactaca
     4081 gaagttcacg ccaaatcagt gaagattctg aaaggactgg tggttccccc agtgtccgac
     4141 atggttcctt ccatgaggaa gatgaccctg ttggttcccc tagggtaatg tcaataaaag
     4201 ggtctcctaa agtagatgaa aaaggtctcc cgtattctaa tataacagtc agagaagagt
     4261 ccttaaaatt taatccttat gattctagca ggagagaaca gatggcagac atggccaaaa
     4321 taaagctatc tgtcttgaat cctgaagatg aactaagtcg gtgggactct caaatgaaac
     4381 aagatgccag cagatttgat gtgagtttcc caaacagcat aattaagaga gacagccttc
     4441 gaaagaggtc tgtacgtgac ttggaacctg gtgaggtgcc ttctgattct gatgaagatg
     4501 gtgaacacaa atctcactca cccagagcct ctgcattatt tgaaagttct cggttgtctt
     4561 ttttattgag ggacagagaa gacaaactac gtgagagaga tgaaagactc tccagttctt
     4621 tagaaaggaa caaattttat tcttttgcat tggataagac aatcacacca gacactaagg
     4681 ctttgcttga aagagctaaa tccctgtctt catctcgaga agaaaattgg tcttttcttg
     4741 attgggactc ccgatttgct aattttcgaa acaacaaaga taaagaaaag gttgactctg
     4801 ctccaagacc tattccatcc tggtacatga aaaagaagaa aattcggact gattcagaag
     4861 gaaaaatgga tgataagaaa gatgaccata aagaagaaga acaggaaagg caagagttat
     4921 ttgcttctcg ttttttacac agctcaatct ttgaacaaga ttctaagcga ttgcagcatc
     4981 tagagagaaa agatgaagaa tctgacttcg tttctggcag gttatatggg aggcagacat
     5041 ctgatggagt gaatagcaca actgatttga ttcaagagcc agtagttctt ttccatagca
     5101 gatttatgga actcacacga atgcaacaga aagaaaaaga aaaagaccaa aaacccaaag
     5161 aggtcgagaa acaggaggat acagaggatc accccaagac ctcagaatct gcttctgaaa
     5221 ataaagagtc agaactgaaa actccacctt cgattgggcc tcctagtgtc acagttgtag
     5281 ctccagagtc tgcagcatca tcactggaga agacagctgc tgaaagaaca ggagaggtgc
     5341 cttcagtgac agaagagaag accactcagc cagcctctgt ctcagaagaa gcaaaacctg
     5401 tatctgatct gactcccatc gctgtggaac aacctgaaca agtagacttg cccccaggag
     5461 tggacaccag gaaagacgtt gctgagactc ctttagttgt tgaagaaaac tcatcagtcg
     5521 atcagctgcc ttatttggac gccaagcctc caactcctgg ggcctcattt tcccaggtag
     5581 agatcagtgt agatccagag cctgacagta cccagacact ttcaaaaccg actcagaagc
     5641 ctgaggaagc cgatgagcca aaagtggaga agccagactc agctgctaat gtcgaaccta
     5701 atgcaagtca aaacgctgaa gatgttcacg aggtcccgcc tccagctact gaaggtgtag
     5761 aggttgaccc tccagttgct gcaaaagata aaaagccgaa caaaagtaaa cgttccaaga
     5821 cccccattca ggcagctgca gcaagtatcg tggagaagcc tgtcacaagg aagagtgaga
     5881 ggatagaccg ggaaaagctc aagcggtcca gttctcctcg gggagaagca cagaagcttt
     5941 tagaattgaa gatggaggca gagaagatta caagggctgc ctctaaaaac tcatccgcgg
     6001 accctgaaca ccctgagcca agcttgcccc tcagccgaac caggcgccgg aatgtaagga
     6061 gtgtctacgc aaccgtgggt gaccatgaga gccgctctcc cgtcaaggag cctgttgagc
     6121 aaccacgagt gaccaggaag agactggagc gggagctgca ggaggctgca gtggttccta
     6181 caacccctag gagggggagg cctccaaaag cacgccgtcg agctgatgaa gatgatgaga
     6241 ccgaggcaaa agagccagtg gagacagtca agccagccga ggggtggagg tccccacgct
     6301 cccagaaagt agctgctggt gtccaacagg ggaaaaaggg gaaaaatgag ccaaaagttg
     6361 atgctgaacg tcctgaggcc accactgagg tgagtcccca attaaacgtg aaagaaaata
     6421 acacaaaatc caagactgat aaagaagaag caggaagtga acaaaaacgt gatagaaaag
     6481 aaattagcac agacaaaaat ccacccgaaa cccccccagt tgaagtggtg gagaaaaaaa
     6541 cagcccctga gaaaaactcc aagtccaaga gaggaagatc tcgaaactcg agatcagcag
     6601 tggacaaatc tgcaaatctg agaaatgtgg aagccactgt aagtcccggc gcggctgcag
     6661 gccctgcggg actgccggcg gaggagacgg ctgcggtcgc ggcagtttcc cctgagaaga
     6721 gcgagagtcc ccaagaggag gctagtttat cgttgcgttt gagcagtgag ccagctgatc
     6781 tggacaagga accagagaag gaagatgggt ctgcctctaa gccgtccccg gaagcaaatc
     6841 agttagccaa gcagatggag ctggagcagg ccgtggagaa catcgagaag ctcgcggaaa
     6901 cctccacccc cacggctttc aaggcggcag ctgcagatgc cccagagcgc ctctccacag
     6961 aggaccggga caagcccgca caccaggcca gcgaaacaga gctggctgcg gccatcggtt
     7021 ccatcatcaa tgacatttct ggggagccag aaaacttccc agcacctcca ccttaccctg
     7081 cagagtctca gacagatctt cagtctcctg aggaaggaat ggagcctgag accgatgagg
     7141 ctgtgtctgg catcttggag actgaggctg ctacagaatc ttctaggcca ccaggcagtg
     7201 cacctgaccc ctcagcaggc ccagcagata ccaaggaagc cagagagaac agcagcgaaa
     7261 cctcccaccc agtgccgcaa gtcaaaggat caaaagaagc agaagttact cttgctcgga
     7321 aagacaaagg gcgccagaag accactcgat cacgccgcaa acggaataca aacaagaaaa
     7381 ctgggggcgc tacagagacc catgtctctg aacctgacca agttcaaagc aagagccctg
     7441 ctacaagcga gggggccacg acacagcccc cagaaactcc acaggaagaa aagcagagtg
     7501 acaagcccca gtccactccc cctgagtcat gtgcttctga cccaagcaag actacatccc
     7561 agggaaattt gtcccaagaa agcagtgttg aagaaaagac tccaaccaaa gcatctgcgc
     7621 tcccagacct tcccccggcc tcacagccag cccccgtgga tgacgagcct cgagccagat
     7681 tcaaggtgca ctccatcatt gaaagtgacc cggtgacccc gcccagtgac tcaagcatgc
     7741 ccactccccc aattccttcc gtaacgatag caaagctccc accccctgtc gctgctgggg
     7801 ggatcccaca ccagagtccg ccgacgaagg tgacagagtg gatcacgagg caggaggagc
     7861 cacgggcgca atccacccca tctccggccc ttcccccaga cacaaaggcc tctgacatag
     7921 acaccagctc cagtacgctg aggaagatcc tcatggaccc taaatacgta tctgccacgg
     7981 gcgtcacttc cacgagtgtc acaactgcca ttgcagagcc tgtcagtgct gccccttgcc
     8041 tgcatgaggc actaccccct ccggttgaat ctaaaaagcc tcttttagaa gaaaaagcag
     8101 cagctccagt aactaacacc tccgacacac aggtctcaga ggttccagtg gccactgaca
     8161 aagaaaaggt gactccagtc attgctccca aaattacttc tgttattagc cggatgcctg
     8221 tcagcattga tttggagaat tcgcaaaaga taactctggc gaagccagct cctcagaccc
     8281 tgactggcct ggtgagcgcc ctgaccggcc tggtgaatgt ctccttggtt ccagtgaatg
     8341 cactggccgg cccagtgaat gccctgaaag gccctgtgaa gggctcagtg gccacgctga
     8401 aaggcttggt gaacactccc gctggccctg tgaatgtcct aaagggacca gtgaatgttc
     8461 tgacggggcc cgtgaatgtt ctcacggctc cagtgaacgc cgccacgggc acagtgaaca
     8521 ctgccgcggg tgcggtgaca gtttccgcgg gtgcggtgac tgctgcatct ggggttgtga
     8581 ctgccacgac aacaggtgca gtgactgtgg caggtgcagt gattgcacca tccgcaaagt
     8641 gccgacagag atccggcact aatgacaaca gtcggttcca cccagggtct atgtctgtga
     8701 ttgatgaccg tccggcagac acgggctctg gcgctgggct gcgtgtgaac acttcagaag
     8761 gggttgtgct gctgagctat tcggggcaga agactgaagg cccacagcgg atcagtgcca
     8821 agattagcca gatcccccca gcaagtgcaa tggacattga gtttcaacag tcggtgtcca
     8881 agtcccaggt caaacccgat tctgtcatgc catctcagcc tccgcccaaa ggccctcagg
     8941 ctccttcagg ctatgcaaac gtggccaccc attctactct ggtactaact gcccagacct
     9001 ataacgcatc tcctgtgatt tcatcggtta aggccgaccg tccgtccttg gagaagcctg
     9061 agcccattca tctctctgtg tccacacccg tcacccaggg tggcacagta aaggtcctca
     9121 cccagggcat aaacacaccc ccggtgctgg ttcacaacca gctggtcctc accccaagca
     9181 tagtcaccac taacaaaaag cttgctgacc ccgtcaccct caaaatagag actaaggtcc
     9241 ttcagccagc aaacctgggg tccactctta caccccacca ccctcctgct ctgcccagca
     9301 aactgcctgc agaagtgaac cacgtcacct cggggcccag caccccgaca gatcggactg
     9361 tctcccattt ggcagccacc aagccagatg tgcattcccc tcgacctagc gggccggctc
     9421 cgtccccatt cccgagggca tgccacccca gcagcaccac atccgccgcg ctctccacta
     9481 atgccacggt catgctggct gcgggcattc ctgtgccgca gttcatctct agcatccacc
     9541 cagagcagtc cgtcatcatg ccaccccaca gcatcaccca gaccgtgtcg ctcagccacc
     9601 tgtcacaggg cgaggtgagg atgaacacgc ccacgttgcc cagcatcacc tacagcatcc
     9661 ggccagagac acttcactct cctcgggccc ccctgcagcc ccagcaaata gaggtccggg
     9721 ccccgcagcc agccacagct ggtgtgcccg ccctggcctc ccagcaccct ccagaggaag
     9781 aagtgcatta tcacctcccc gttgctcgag ccgcagcccc tgtgcagtcg gaggtgctgg
     9841 tcatgcagtc tgagtaccga ctacacccgt acactgtgcc ccgggatgtg aggatcatgg
     9901 tgcatcctca cgtgacggcc gtcagcgagc agccccgggc agcggacggg gtggtgaaag
     9961 tgccaccagc cagcaaggcc cctcagcagc cagggaaaga agccgccaag atggcagatg
    10021 ccaaagccgc ccccgccccc gcccccgccc cccacggtga ggcccgcatc ctcacagtca
    10081 cacccagcaa ccagctgcag gggctgcctc tgaccccgcc tgtggtggtg acgcacgggg
    10141 tgcagattgt gcactccagc ggggagctct tccaggagta caggtacggg gacgtccgca
    10201 cctaccacag cccggctcag ctcgcgcaca cgccgtttcc tgctgctgcc tccattggcc
    10261 tgccttcccg gaccaaggct cctgctcagg gcctccctcc cgaaggcgag ccctcgcagc
    10321 ctctgcagcc cgcgcagtcc gcacagccgg cccagtccac gcagacctcc cagctcagcc
    10381 agccaggcca gccaccaagc agcaagatgc ctccagtctc ccaggaggca aagggcaccc
    10441 agacaggagt agagcagccg cgcctcccaa acgtacctgg aaacaggccg gcggagcctc
    10501 atgcccaggt ccacagggct caggcggaaa caagccagac ctcctatcct tcccccgtgt
    10561 ctgtctcgat gaagcctgac ctcccggccc ctcttcctgc tcaggctgcc ccaaagcagc
    10621 cgttgtttgt ccctacaccc tcaggcccca gcccccctcc aggactggct ctgccgcata
    10681 ctgaaaccca gcccgccccc aaacaagatt cctctcctca tttgacttcc cagagacctg
    10741 tggatatggt ccagcttctg aagaagtacc ccatcgtgtg gcagggcctc ctggccctca
    10801 agaacgacac agctgctgtg cagctccact tcgtctctgg caacaatgtc ctggcccatc
    10861 ggtccctgcc gctctctgaa ggagggcccc ccctgaggat tgcccagagg atgcggctgg
    10921 aggcctcaca gctggagggg gttgcccgaa ggatgacggt ggagacagat tactgtctgc
    10981 tgctggctct gccctgtggc cgtgaccaag aggacgtcgt gagccagacc gagtccctca
    11041 aggctgcctt catcacgtat ctgcaggcca agcaggcggc aggcatcatc aacgttccca
    11101 accctggctc caatcagcct gcctacgtgc tgcagatctt cccgccctgc gaattctctg
    11161 agagtcacct gtcccgtctg gcccccgacc tcctggccag catctcccac atttctcccc
    11221 acctcatgat cgtcattgcc tccgtgtgag ccaccgaatg gtcaccactc ggcgtatctt
    11281 cctgaggctc tgcagcaaaa aataaaacac aggacaaccc agccaagtgg aggaagaagc
    11341 tgccgggggg ggacagactc cactgccaga cggccagcct cgctctccta cccgcccgcc
    11401 cgcccggctc agtcagacag accccgcctg ggcagtggtg ctgctactcg tatgtttaca
    11461 tgacatttag cccaaggaca gaccaccaac caatggactt gcagacacct tgaggctggg
    11521 tttctctctc ctcctcttgg agaaaaggaa cagggcagtg gaattttttt gtttttgttt
    11581 ttaagaaaca aaacagaact gcctttgcac taaattagtg acttggactt ttgcacagtg
    11641 aagacaggct gtgacactct ggatgtcttg gtgtacgtga acacacatgg cacacacatc
    11701 gcagactctc atgcaggact tcaaacttct gctgaaacct tggggtcaag gaacatttca
    11761 ttgggctgtg ttgtccccac ccctcccttc cccttgctca tttggatgtc atctctcttt
    11821 aattctcctg ctgccaccat ctctgattca cccaggatgt acagtttaca atcagaaaag
    11881 agcaaacaga aggattttct ctcttggtgg aatatgcaga acttgggatg tgtgtatata
    11941 taaatatata atatatataa atatatataa tactgactta aaaatcaaat tccccgacat
    12001 acattttttt taatctgtgc caaaaatgtg ttttcagaga aaatcttatt ttcatactca
    12061 gactttgtat tgtcactcat ttgtataagt gcgcttcgtt acagcacggg ccctgctccc
    12121 gcaacttgga agtgtcacac acacaaaaag actgtacaaa agactggctt cccttcttcc
    12181 tgtgaccttg acctctcccc ccaacttcct aacacttatt aatttatgaa aactgttttt
    12241 ctcagcgcag ttttgttttg tgtgtccatt ggattacaaa ctttattaaa aaatacagaa
    12301 ca
//
LOCUS       XM_032650816           12493 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spen family transcriptional repressor
            (SPEN), transcript variant X2, mRNA.
ACCESSION   XM_032650816
VERSION     XM_032650816.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12493
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..12493
                     /gene="SPEN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 23 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763253"
     CDS             740..11440
                     /gene="SPEN"
                     /codon_start=1
                     /product="msx2-interacting protein isoform X2"
                     /protein_id="XP_032506707.1"
                     /db_xref="GeneID:116763253"
                     /translation="MGDRDLRTDYNEPGTIPSAARGLDDTVSIASRSREVSGFRGGGG
                     GPAYGPPPSLHAREGRYERRLDGASDNRERAYEHSAYGHHERGTGGFDRTRHYDQDYY
                     RDPRERTLQHGLYYTSRSRSPNRFDAHDPRYEPRAREQFTLPSVVHRDIYRDDITREV
                     RGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPARSPSGSGSRSRSSSSDSISS
                     SSSTSSDSTDSSSSSSDDSPARSVQSAAVPAPTSQLLSSLEKDEPRKSFGIKVQNLPV
                     RSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFF
                     GMQIEVTAWIGPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQR
                     FGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGKSMPTNC
                     VWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAAVKETKGRK
                     IGGNKIKVDFANRESQLAFYHCMEKSGQDIRDFYEMLAERREERRGSYDYSQDRTYYE
                     NVRTPGTYAEDSRRDYPARGREFYSEWETYQGDYYESRYYDDPREYRDYRNDPYEQDI
                     REYSYRQRERERERERFESDRDRDHERRPIERSQSPVHLRRPQSPGASPSQSERLPSD
                     SERRIYSRSSDRSGSCSSLSPPRYDKLDKPRLERYTKNEKTDKERTFDPERVERERRL
                     IRKEKVEKDKTDKQKRKGKVHSPSSQSSETDQENEREQSPEKSRSSNKLSREKADKEG
                     VAKNRLELMPCVVLTRVKEKEGKVIDHTPLEKLKAKLDNDTVKSSALDQKLQVSQTEP
                     AKSELSKLESVRMKAPKERGLSSHIEVVDKEGRPKPRKHLKPEQTVDGVSAVDLEKLE
                     ARKRRFADSNLKAERQKSDVKKSSPEMEDARVLLKKQPDISSRDVILLREGESEKKTV
                     RKEILKRESKKIKLDRLNAVPSSRECQELASISVGTVSRPNSDLQARLREPVGESVEN
                     QEIQSKKPTPSKPPLKQLELLDDQGPEREDNRKNYCSLRDEPLECKSGQDKPHSVNTE
                     EKIGIDIDHTQSYRKQMEQSRRKQQMEMEIAKSEKFGSPKKDVDEYERRSLVHEVGKP
                     PQDVTDDSPPSKKKRMDHVDFDICTKRERNYRSSRQISEDSERTGGSPSVRHGSFHEE
                     DDPVGSPRVMSIKGSPKVDEKGLPYSNITVREESLKFNPYDSSRREQMADMAKIKLSV
                     LNPEDELSRWDSQMKQDASRFDVSFPNSIIKRDSLRKRSVRDLEPGEVPSDSDEDGEH
                     KSHSPRASALFESSRLSFLLRDREDKLRERDERLSSSLERNKFYSFALDKTITPDTKA
                     LLERAKSLSSSREENWSFLDWDSRFANFRNNKDKEKVDSAPRPIPSWYMKKKKIRTDS
                     EGKMDDKKDDHKEEEQERQELFASRFLHSSIFEQDSKRLQHLERKDEESDFVSGRLYG
                     RQTSDGVNSTTDLIQEPVVLFHSRFMELTRMQQKEKEKDQKPKEVEKQEDTEDHPKTS
                     ESASENKESELKTPPSIGPPSVTVVAPESAASSLEKTAAERTGEVPSVTEEKTTQPAS
                     VSEEAKPVSDLTPIAVEQPEQVDLPPGVDTRKDVAETPLVVEENSSVDQLPYLDAKPP
                     TPGASFSQVEISVDPEPDSTQTLSKPTQKPEEADEPKVEKPDSAANVEPNASQNAEDV
                     HEVPPPATEGVEVDPPVAAKDKKPNKSKRSKTPIQAAAASIVEKPVTRKSERIDREKL
                     KRSSSPRGEAQKLLELKMEAEKITRAASKNSSADPEHPEPSLPLSRTRRRNVRSVYAT
                     VGDHESRSPVKEPVEQPRVTRKRLERELQEAAVVPTTPRRGRPPKARRRADEDDETEA
                     KEPVETVKPAEGWRSPRSQKVAAGVQQGKKGKNEPKVDAERPEATTEVSPQLNVKENN
                     TKSKTDKEEAGSEQKRDRKEISTDKNPPETPPVEVVEKKTAPEKNSKSKRGRSRNSRS
                     AVDKSANLRNVEATVSPGAAAGPAGLPAEETAAVAAVSPEKSESPQEEASLSLRLSSE
                     PADLDKEPEKEDGSASKPSPEANQLAKQMELEQAVENIEKLAETSTPTAFKAAAADAP
                     ERLSTEDRDKPAHQASETELAAAIGSIINDISGEPENFPAPPPYPAESQTDLQSPEEG
                     MEPETDEAVSGILETEAATESSRPPGSAPDPSAGPADTKEARENSSETSHPVPQVKGS
                     KEAEVTLARKDKGRQKTTRSRRKRNTNKKTGGATETHVSEPDQVQSKSPATSEGATTQ
                     PPETPQEEKQSDKPQSTPPESCASDPSKTTSQGNLSQESSVEEKTPTKASALPDLPPA
                     SQPAPVDDEPRARFKVHSIIESDPVTPPSDSSMPTPPIPSVTIAKLPPPVAAGGIPHQ
                     SPPTKVTEWITRQEEPRAQSTPSPALPPDTKASDIDTSSSTLRKILMDPKYVSATGVT
                     STSVTTAIAEPVSAAPCLHEALPPPVESKKPLLEEKAAAPVTNTSDTQVSEVPVATDK
                     EKVTPVIAPKITSVISRMPVSIDLENSQKITLAKPAPQTLTGLVSALTGLVNVSLVPV
                     NALAGPVNALKGPVKGSVATLKGLVNTPAGPVNVLKGPVNVLTGPVNVLTAPVNAATG
                     TVNTAAGAVTVSAGAVTAASGVVTATTTGAVTVAGAVIAPSAKCRQRSGTNDNSRFHP
                     GSMSVIDDRPADTGSGAGLRVNTSEGVVLLSYSGQKTEGPQRISAKISQIPPASAMDI
                     EFQQSVSKSQVKPDSVMPSQPPPKGPQAPSGYANVATHSTLVLTAQTYNASPVISSVK
                     ADRPSLEKPEPIHLSVSTPVTQGGTVKVLTQGINTPPVLVHNQLVLTPSIVTTNKKLA
                     DPVTLKIETKVLQPANLGSTLTPHHPPALPSKLPAEVNHVTSGPSTPTDRTVSHLAAT
                     KPDVHSPRPSGPAPSPFPRACHPSSTTSAALSTNATVMLAAGIPVPQFISSIHPEQSV
                     IMPPHSITQTVSLSHLSQGEVRMNTPTLPSITYSIRPETLHSPRAPLQPQQIEVRAPQ
                     PATAGVPALASQHPPEEEVHYHLPVARAAAPVQSEVLVMQSEYRLHPYTVPRDVRIMV
                     HPHVTAVSEQPRAADGVVKVPPASKAPQQPGKEAAKMADAKAAPAPAPAPHGEARILT
                     VTPSNQLQGLPLTPPVVVTHGVQIVHSSGELFQEYRYGDVRTYHSPAQLAHTPFPAAA
                     SIGLPSRTKAPAQGLPPEGEPSQPLQPAQSAQPAQSTQTSQLSQPGQPPSSKMPPVSQ
                     EAKGTQTGVEQPRLPNVPGNRPAEPHAQVHRAQAETSQTSYPSPVSVSMKPDLPAPLP
                     AQAAPKQPLFVPTPSGPSPPPGLALPHTETQPAPKQDSSPHLTSQRPVDMVQLLKKYP
                     IVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLSEGGPPLRIAQRMRLEASQLEGVA
                     RRMTVETDYCLLLALPCGRDQEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQP
                     AYVLQIFPPCEFSESHLSRLAPDLLASISHISPHLMIVIASV"
     misc_feature    1541..1762
                     /gene="SPEN"
                     /note="RNA recognition motif 2 (RRM2) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM2_SHARP; cd12349"
                     /db_xref="CDD:409785"
     misc_feature    1841..2062
                     /gene="SPEN"
                     /note="RNA recognition motif 3 (RRM3) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM3_SHARP; cd12350"
                     /db_xref="CDD:409786"
     misc_feature    2063..2293
                     /gene="SPEN"
                     /note="RNA recognition motif 4 (RRM4) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM4_SHARP; cd12351"
                     /db_xref="CDD:409787"
     misc_feature    <2432..4294
                     /gene="SPEN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <5300..6811
                     /gene="SPEN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <7166..8470
                     /gene="SPEN"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <9356..10891
                     /gene="SPEN"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    10955..11437
                     /gene="SPEN"
                     /note="SPOC (Spen paralog and ortholog C-terminal) domain
                     found in SMART/HDAC1-associated repressor protein (SHARP)
                     and similar proteins; Region: SPOC_SHARP; cd21543"
                     /db_xref="CDD:439206"
     misc_feature    order(10985..10996,11087..11107,11141..11143,11249..11254,
                     11261..11263,11270..11278,11318..11320,11324..11326)
                     /gene="SPEN"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:439206"
ORIGIN      
        1 ggcggagaaa atgaaaggcg ccgcggaccc ctcccccaca gcacagcaat gccaagccga
       61 gctttctcct gatggcaggt cgggggcctc ggcgcgcctc cttagccgca cggaggacac
      121 cacggcctcc ccgcggcgcc ccgccgggca gcaccgtccg ccacccccgc ctcgagtcca
      181 aacgacgcag cggctttatg cctggactgc ctctgctctt ccaaacgggc ccctctctca
      241 ggaatccctt acttaagggg gtacaaactg gaaagaactg agcgtggcac acctgccggg
      301 cgacccttgc ccgcccaggt cgcccctcgg gccgggcgcg gggagggagc aacctttact
      361 agggtcctcc acactcgcaa ctttagctcc aggtcaccaa agtaaagaga ggaaaggggt
      421 gatcaaagaa gcccccaaat gagggggaac taaggaacca ggggccaaag gccctagacc
      481 actccttcag cagccacgtc gacccccaac gcactgagcc cacacccgag agcgcagcga
      541 agagccgctg gtggcccatc gtgcgcgggc agctccagag cgcggatgtc ggctttccct
      601 ccaccacgca aacatccaat atggccgcgt ggaaagtgtc aaaattctcc ccaagagggg
      661 ttctgaagga ggagtggctg cctttgtgga ttttgtggac atcaaaagtg cacagaaggc
      721 tcacaactca gtcaacaaaa tgggagatag agacctacgc acggattata atgaaccagg
      781 caccattccg agcgctgctc ggggattgga tgatacagtt tccatagcat ctcgtagtag
      841 agaggtttct gggttcagag gaggtggtgg agggcctgct tatggccccc caccatcact
      901 tcatgcacga gaaggacgtt atgagcggag acttgatggg gcttcagata acagggagcg
      961 tgcttatgaa catagtgcct atggacacca tgaacggggg acgggaggat ttgatcggac
     1021 gagacattac gatcaggatt actatagaga tcctcgcgag cggactttac aacatgggct
     1081 ctattatact tctcggagtc gaagtccaaa ccgttttgat gctcatgatc cccgatacga
     1141 acctagggct cgggagcagt ttacactgcc cagtgtggta cacagggata tctacaggga
     1201 tgatattacc cgggaggtac gaggcagaag gccagagcgg aattaccagc acagcaggag
     1261 tcgctcacca cattcatccc agtctagaaa tcagtctcct cagaggctgg ctagccaagc
     1321 gtctagaccc gcaaggtccc ctagcggcag cggctctagg agtagatcct ccagtagtga
     1381 ttcaatcagc agcagcagta gtaccagcag tgacagcact gattccagca gtagttcaag
     1441 tgatgactct ccagcccgat cagttcaatc tgcagcagtc ccagcaccca cttcccagtt
     1501 gctttcatcc ctggaaaaag atgagccgcg taaaagtttt gggatcaagg ttcagaatct
     1561 tccagtacgc tccacagata caagtctcaa agatggcctt ttccatgaat ttaagaaatt
     1621 tggaaaggtg acttcagtgc agatacatgg aacttcagaa gaaaggtatg gtctggtatt
     1681 cttccggcag caggaggacc aagaaaaagc attgactgca tcaaaaggaa aacttttctt
     1741 cggcatgcag attgaagtaa cagcatggat agggccagaa acagaaagtg aaaatgaatt
     1801 tcgccctttg gatgaaagga tagatgaatt tcaccccaaa gcaacaagaa ctctctttat
     1861 tggtaacctt gaaaaaacca ctacttatca tgatcttcgc aacatcttcc aacgctttgg
     1921 agaaattgtg gatattgata ttaagaaagt aaatggagtt cctcagtatg cgttcttgca
     1981 atactgtgat attgccagcg tttgtaaggc tattaagaag atggatgggg aataccttgg
     2041 aaataatcgt ctcaagctgg gttttggaaa gagcatgcct acaaactgtg tgtggttaga
     2101 tgggctttct tcaaacgtat cggatcaata tttaacacga catttctgcc gatatgggcc
     2161 tgtggtgaag gtggtgtttg accgcttaaa aggcatggcc ctggttctct acaatgaaat
     2221 tgaatatgca caagcagctg taaaagagac caaggggagg aaaatcggtg ggaataaaat
     2281 taaggtggat tttgcaaatc gggaaagtca gctggcattt tatcactgta tggaaaaatc
     2341 tggtcaagat atcagagact tctatgaaat gttagcagaa agaagagaag aaagaagggg
     2401 atcgtatgac tatagccaag atcgtacata ttatgagaat gttcgtactc caggcacata
     2461 tgctgaggat tccagacggg actatccagc tcgagggaga gaattttatt cagaatggga
     2521 aacttaccaa ggagactact atgaatcacg atattacgat gatccccggg aatataggga
     2581 ttacagaaat gatccttatg aacaagatat tcgggaatac agttacaggc aaagggaacg
     2641 agaaagagaa cgtgaaagat ttgagtctga ccgggacaga gaccacgaga ggaggccaat
     2701 tgaacgcagt cagagtccag ttcacttgcg acgcccacag agtcctggag catcaccctc
     2761 acagtcagag agattgccta gtgattccga gaggaggatt tacagccgat cctcggaccg
     2821 gagtggaagc tgtagctcac tttcccctcc aagatatgat aaacttgaca aacctcgttt
     2881 ggaacgctat acaaaaaacg aaaagacaga taaagaacga acttttgatc ctgagagagt
     2941 ggaaagagag agacgtttaa taaggaagga aaaggtggag aaggacaaaa ctgacaagca
     3001 gaaacggaaa ggaaaagttc attcccctag ttctcagtct tcagaaacag accaagaaaa
     3061 tgagagagaa caaagccctg aaaaatcaag gagttctaat aaactgagca gagagaaagc
     3121 tgacaaagaa ggagtagcaa aaaaccgctt ggaactcatg ccttgtgtgg ttttgactcg
     3181 agtgaaagaa aaagagggga aggttattga ccatactcct ttggaaaagc tgaaagccaa
     3241 gcttgataat gacactgtca agtcttctgc cttagatcag aaacttcagg tctctcagac
     3301 agagcctgca aaatctgagt tgtctaaact agaatctgtt agaatgaaag cgccaaagga
     3361 aagggggctt tcaagccaca tagaagtggt agataaggaa ggcaggccta aacccaggaa
     3421 gcacctaaaa ccagagcaaa ctgttgatgg ggtaagtgct gtggatctgg agaagctgga
     3481 agcgaggaaa aggcgttttg cagattccaa tttgaaagca gaaaggcaaa aatcagatgt
     3541 taagaaaagt agcccagaga tggaagatgc tcgggtgctt ttaaagaaac agcctgacat
     3601 atcatctaga gatgtcattc tactgaggga aggagagtct gagaaaaaga cggtgaggaa
     3661 agaaattctt aaaagagaat ctaaaaaaat caaactagac agacttaatg ctgttcccag
     3721 ctccagagag tgtcaggagc ttgccagcat ttctgtgggg actgtatcaa ggcccaactc
     3781 agatctgcaa gcaaggctga gagaaccagt aggtgaatct gtggaaaacc aagaaatcca
     3841 gtccaaaaaa cccactcctt caaaaccacc acttaaacag ctggagctat tagatgatca
     3901 aggaccagag agagaagata ataggaaaaa ctattgcagt cttcgtgatg aaccacttga
     3961 atgtaaatca ggccaagata aaccacattc agtaaatact gaagaaaaaa ttggcattga
     4021 tattgatcac acgcagagtt accgaaaaca aatggagcag agtcgtagaa aacagcagat
     4081 ggagatggaa atagccaagt ccgaaaagtt tggcagtcct aaaaaagatg tggatgaata
     4141 tgaaagacgt agtcttgttc acgaggtcgg caaaccccct caggatgtca ctgacgactc
     4201 tcctcccagc aaaaagaaga ggatggacca tgttgatttt gacatctgca ccaagagaga
     4261 acggaactac agaagttcac gccaaatcag tgaagattct gaaaggactg gtggttcccc
     4321 cagtgtccga catggttcct tccatgagga agatgaccct gttggttccc ctagggtaat
     4381 gtcaataaaa gggtctccta aagtagatga aaaaggtctc ccgtattcta atataacagt
     4441 cagagaagag tccttaaaat ttaatcctta tgattctagc aggagagaac agatggcaga
     4501 catggccaaa ataaagctat ctgtcttgaa tcctgaagat gaactaagtc ggtgggactc
     4561 tcaaatgaaa caagatgcca gcagatttga tgtgagtttc ccaaacagca taattaagag
     4621 agacagcctt cgaaagaggt ctgtacgtga cttggaacct ggtgaggtgc cttctgattc
     4681 tgatgaagat ggtgaacaca aatctcactc acccagagcc tctgcattat ttgaaagttc
     4741 tcggttgtct tttttattga gggacagaga agacaaacta cgtgagagag atgaaagact
     4801 ctccagttct ttagaaagga acaaatttta ttcttttgca ttggataaga caatcacacc
     4861 agacactaag gctttgcttg aaagagctaa atccctgtct tcatctcgag aagaaaattg
     4921 gtcttttctt gattgggact cccgatttgc taattttcga aacaacaaag ataaagaaaa
     4981 ggttgactct gctccaagac ctattccatc ctggtacatg aaaaagaaga aaattcggac
     5041 tgattcagaa ggaaaaatgg atgataagaa agatgaccat aaagaagaag aacaggaaag
     5101 gcaagagtta tttgcttctc gttttttaca cagctcaatc tttgaacaag attctaagcg
     5161 attgcagcat ctagagagaa aagatgaaga atctgacttc gtttctggca ggttatatgg
     5221 gaggcagaca tctgatggag tgaatagcac aactgatttg attcaagagc cagtagttct
     5281 tttccatagc agatttatgg aactcacacg aatgcaacag aaagaaaaag aaaaagacca
     5341 aaaacccaaa gaggtcgaga aacaggagga tacagaggat caccccaaga cctcagaatc
     5401 tgcttctgaa aataaagagt cagaactgaa aactccacct tcgattgggc ctcctagtgt
     5461 cacagttgta gctccagagt ctgcagcatc atcactggag aagacagctg ctgaaagaac
     5521 aggagaggtg ccttcagtga cagaagagaa gaccactcag ccagcctctg tctcagaaga
     5581 agcaaaacct gtatctgatc tgactcccat cgctgtggaa caacctgaac aagtagactt
     5641 gcccccagga gtggacacca ggaaagacgt tgctgagact cctttagttg ttgaagaaaa
     5701 ctcatcagtc gatcagctgc cttatttgga cgccaagcct ccaactcctg gggcctcatt
     5761 ttcccaggta gagatcagtg tagatccaga gcctgacagt acccagacac tttcaaaacc
     5821 gactcagaag cctgaggaag ccgatgagcc aaaagtggag aagccagact cagctgctaa
     5881 tgtcgaacct aatgcaagtc aaaacgctga agatgttcac gaggtcccgc ctccagctac
     5941 tgaaggtgta gaggttgacc ctccagttgc tgcaaaagat aaaaagccga acaaaagtaa
     6001 acgttccaag acccccattc aggcagctgc agcaagtatc gtggagaagc ctgtcacaag
     6061 gaagagtgag aggatagacc gggaaaagct caagcggtcc agttctcctc ggggagaagc
     6121 acagaagctt ttagaattga agatggaggc agagaagatt acaagggctg cctctaaaaa
     6181 ctcatccgcg gaccctgaac accctgagcc aagcttgccc ctcagccgaa ccaggcgccg
     6241 gaatgtaagg agtgtctacg caaccgtggg tgaccatgag agccgctctc ccgtcaagga
     6301 gcctgttgag caaccacgag tgaccaggaa gagactggag cgggagctgc aggaggctgc
     6361 agtggttcct acaaccccta ggagggggag gcctccaaaa gcacgccgtc gagctgatga
     6421 agatgatgag accgaggcaa aagagccagt ggagacagtc aagccagccg aggggtggag
     6481 gtccccacgc tcccagaaag tagctgctgg tgtccaacag gggaaaaagg ggaaaaatga
     6541 gccaaaagtt gatgctgaac gtcctgaggc caccactgag gtgagtcccc aattaaacgt
     6601 gaaagaaaat aacacaaaat ccaagactga taaagaagaa gcaggaagtg aacaaaaacg
     6661 tgatagaaaa gaaattagca cagacaaaaa tccacccgaa acccccccag ttgaagtggt
     6721 ggagaaaaaa acagcccctg agaaaaactc caagtccaag agaggaagat ctcgaaactc
     6781 gagatcagca gtggacaaat ctgcaaatct gagaaatgtg gaagccactg taagtcccgg
     6841 cgcggctgca ggccctgcgg gactgccggc ggaggagacg gctgcggtcg cggcagtttc
     6901 ccctgagaag agcgagagtc cccaagagga ggctagttta tcgttgcgtt tgagcagtga
     6961 gccagctgat ctggacaagg aaccagagaa ggaagatggg tctgcctcta agccgtcccc
     7021 ggaagcaaat cagttagcca agcagatgga gctggagcag gccgtggaga acatcgagaa
     7081 gctcgcggaa acctccaccc ccacggcttt caaggcggca gctgcagatg ccccagagcg
     7141 cctctccaca gaggaccggg acaagcccgc acaccaggcc agcgaaacag agctggctgc
     7201 ggccatcggt tccatcatca atgacatttc tggggagcca gaaaacttcc cagcacctcc
     7261 accttaccct gcagagtctc agacagatct tcagtctcct gaggaaggaa tggagcctga
     7321 gaccgatgag gctgtgtctg gcatcttgga gactgaggct gctacagaat cttctaggcc
     7381 accaggcagt gcacctgacc cctcagcagg cccagcagat accaaggaag ccagagagaa
     7441 cagcagcgaa acctcccacc cagtgccgca agtcaaagga tcaaaagaag cagaagttac
     7501 tcttgctcgg aaagacaaag ggcgccagaa gaccactcga tcacgccgca aacggaatac
     7561 aaacaagaaa actgggggcg ctacagagac ccatgtctct gaacctgacc aagttcaaag
     7621 caagagccct gctacaagcg agggggccac gacacagccc ccagaaactc cacaggaaga
     7681 aaagcagagt gacaagcccc agtccactcc ccctgagtca tgtgcttctg acccaagcaa
     7741 gactacatcc cagggaaatt tgtcccaaga aagcagtgtt gaagaaaaga ctccaaccaa
     7801 agcatctgcg ctcccagacc ttcccccggc ctcacagcca gcccccgtgg atgacgagcc
     7861 tcgagccaga ttcaaggtgc actccatcat tgaaagtgac ccggtgaccc cgcccagtga
     7921 ctcaagcatg cccactcccc caattccttc cgtaacgata gcaaagctcc caccccctgt
     7981 cgctgctggg gggatcccac accagagtcc gccgacgaag gtgacagagt ggatcacgag
     8041 gcaggaggag ccacgggcgc aatccacccc atctccggcc cttcccccag acacaaaggc
     8101 ctctgacata gacaccagct ccagtacgct gaggaagatc ctcatggacc ctaaatacgt
     8161 atctgccacg ggcgtcactt ccacgagtgt cacaactgcc attgcagagc ctgtcagtgc
     8221 tgccccttgc ctgcatgagg cactaccccc tccggttgaa tctaaaaagc ctcttttaga
     8281 agaaaaagca gcagctccag taactaacac ctccgacaca caggtctcag aggttccagt
     8341 ggccactgac aaagaaaagg tgactccagt cattgctccc aaaattactt ctgttattag
     8401 ccggatgcct gtcagcattg atttggagaa ttcgcaaaag ataactctgg cgaagccagc
     8461 tcctcagacc ctgactggcc tggtgagcgc cctgaccggc ctggtgaatg tctccttggt
     8521 tccagtgaat gcactggccg gcccagtgaa tgccctgaaa ggccctgtga agggctcagt
     8581 ggccacgctg aaaggcttgg tgaacactcc cgctggccct gtgaatgtcc taaagggacc
     8641 agtgaatgtt ctgacggggc ccgtgaatgt tctcacggct ccagtgaacg ccgccacggg
     8701 cacagtgaac actgccgcgg gtgcggtgac agtttccgcg ggtgcggtga ctgctgcatc
     8761 tggggttgtg actgccacga caacaggtgc agtgactgtg gcaggtgcag tgattgcacc
     8821 atccgcaaag tgccgacaga gatccggcac taatgacaac agtcggttcc acccagggtc
     8881 tatgtctgtg attgatgacc gtccggcaga cacgggctct ggcgctgggc tgcgtgtgaa
     8941 cacttcagaa ggggttgtgc tgctgagcta ttcggggcag aagactgaag gcccacagcg
     9001 gatcagtgcc aagattagcc agatcccccc agcaagtgca atggacattg agtttcaaca
     9061 gtcggtgtcc aagtcccagg tcaaacccga ttctgtcatg ccatctcagc ctccgcccaa
     9121 aggccctcag gctccttcag gctatgcaaa cgtggccacc cattctactc tggtactaac
     9181 tgcccagacc tataacgcat ctcctgtgat ttcatcggtt aaggccgacc gtccgtcctt
     9241 ggagaagcct gagcccattc atctctctgt gtccacaccc gtcacccagg gtggcacagt
     9301 aaaggtcctc acccagggca taaacacacc cccggtgctg gttcacaacc agctggtcct
     9361 caccccaagc atagtcacca ctaacaaaaa gcttgctgac cccgtcaccc tcaaaataga
     9421 gactaaggtc cttcagccag caaacctggg gtccactctt acaccccacc accctcctgc
     9481 tctgcccagc aaactgcctg cagaagtgaa ccacgtcacc tcggggccca gcaccccgac
     9541 agatcggact gtctcccatt tggcagccac caagccagat gtgcattccc ctcgacctag
     9601 cgggccggct ccgtccccat tcccgagggc atgccacccc agcagcacca catccgccgc
     9661 gctctccact aatgccacgg tcatgctggc tgcgggcatt cctgtgccgc agttcatctc
     9721 tagcatccac ccagagcagt ccgtcatcat gccaccccac agcatcaccc agaccgtgtc
     9781 gctcagccac ctgtcacagg gcgaggtgag gatgaacacg cccacgttgc ccagcatcac
     9841 ctacagcatc cggccagaga cacttcactc tcctcgggcc cccctgcagc cccagcaaat
     9901 agaggtccgg gccccgcagc cagccacagc tggtgtgccc gccctggcct cccagcaccc
     9961 tccagaggaa gaagtgcatt atcacctccc cgttgctcga gccgcagccc ctgtgcagtc
    10021 ggaggtgctg gtcatgcagt ctgagtaccg actacacccg tacactgtgc cccgggatgt
    10081 gaggatcatg gtgcatcctc acgtgacggc cgtcagcgag cagccccggg cagcggacgg
    10141 ggtggtgaaa gtgccaccag ccagcaaggc ccctcagcag ccagggaaag aagccgccaa
    10201 gatggcagat gccaaagccg cccccgcccc cgcccccgcc ccccacggtg aggcccgcat
    10261 cctcacagtc acacccagca accagctgca ggggctgcct ctgaccccgc ctgtggtggt
    10321 gacgcacggg gtgcagattg tgcactccag cggggagctc ttccaggagt acaggtacgg
    10381 ggacgtccgc acctaccaca gcccggctca gctcgcgcac acgccgtttc ctgctgctgc
    10441 ctccattggc ctgccttccc ggaccaaggc tcctgctcag ggcctccctc ccgaaggcga
    10501 gccctcgcag cctctgcagc ccgcgcagtc cgcacagccg gcccagtcca cgcagacctc
    10561 ccagctcagc cagccaggcc agccaccaag cagcaagatg cctccagtct cccaggaggc
    10621 aaagggcacc cagacaggag tagagcagcc gcgcctccca aacgtacctg gaaacaggcc
    10681 ggcggagcct catgcccagg tccacagggc tcaggcggaa acaagccaga cctcctatcc
    10741 ttcccccgtg tctgtctcga tgaagcctga cctcccggcc cctcttcctg ctcaggctgc
    10801 cccaaagcag ccgttgtttg tccctacacc ctcaggcccc agcccccctc caggactggc
    10861 tctgccgcat actgaaaccc agcccgcccc caaacaagat tcctctcctc atttgacttc
    10921 ccagagacct gtggatatgg tccagcttct gaagaagtac cccatcgtgt ggcagggcct
    10981 cctggccctc aagaacgaca cagctgctgt gcagctccac ttcgtctctg gcaacaatgt
    11041 cctggcccat cggtccctgc cgctctctga aggagggccc cccctgagga ttgcccagag
    11101 gatgcggctg gaggcctcac agctggaggg ggttgcccga aggatgacgg tggagacaga
    11161 ttactgtctg ctgctggctc tgccctgtgg ccgtgaccaa gaggacgtcg tgagccagac
    11221 cgagtccctc aaggctgcct tcatcacgta tctgcaggcc aagcaggcgg caggcatcat
    11281 caacgttccc aaccctggct ccaatcagcc tgcctacgtg ctgcagatct tcccgccctg
    11341 cgaattctct gagagtcacc tgtcccgtct ggcccccgac ctcctggcca gcatctccca
    11401 catttctccc cacctcatga tcgtcattgc ctccgtgtga gccaccgaat ggtcaccact
    11461 cggcgtatct tcctgaggct ctgcagcaaa aaataaaaca caggacaacc cagccaagtg
    11521 gaggaagaag ctgccggggg gggacagact ccactgccag acggccagcc tcgctctcct
    11581 acccgcccgc ccgcccggct cagtcagaca gaccccgcct gggcagtggt gctgctactc
    11641 gtatgtttac atgacattta gcccaaggac agaccaccaa ccaatggact tgcagacacc
    11701 ttgaggctgg gtttctctct cctcctcttg gagaaaagga acagggcagt ggaatttttt
    11761 tgtttttgtt tttaagaaac aaaacagaac tgcctttgca ctaaattagt gacttggact
    11821 tttgcacagt gaagacaggc tgtgacactc tggatgtctt ggtgtacgtg aacacacatg
    11881 gcacacacat cgcagactct catgcaggac ttcaaacttc tgctgaaacc ttggggtcaa
    11941 ggaacatttc attgggctgt gttgtcccca cccctccctt ccccttgctc atttggatgt
    12001 catctctctt taattctcct gctgccacca tctctgattc acccaggatg tacagtttac
    12061 aatcagaaaa gagcaaacag aaggattttc tctcttggtg gaatatgcag aacttgggat
    12121 gtgtgtatat ataaatatat aatatatata aatatatata atactgactt aaaaatcaaa
    12181 ttccccgaca tacatttttt ttaatctgtg ccaaaaatgt gttttcagag aaaatcttat
    12241 tttcatactc agactttgta ttgtcactca tttgtataag tgcgcttcgt tacagcacgg
    12301 gccctgctcc cgcaacttgg aagtgtcaca cacacaaaaa gactgtacaa aagactggct
    12361 tcccttcttc ctgtgacctt gacctctccc cccaacttcc taacacttat taatttatga
    12421 aaactgtttt tctcagcgca gttttgtttt gtgtgtccat tggattacaa actttattaa
    12481 aaaatacaga aca
//
LOCUS       XM_032650823           11825 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spen family transcriptional repressor
            (SPEN), transcript variant X3, mRNA.
ACCESSION   XM_032650823
VERSION     XM_032650823.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11825
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..11825
                     /gene="SPEN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763253"
     CDS             345..10772
                     /gene="SPEN"
                     /codon_start=1
                     /product="msx2-interacting protein isoform X3"
                     /protein_id="XP_032506714.1"
                     /db_xref="GeneID:116763253"
                     /translation="MVRETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSE
                     GGVAAFVDFVDIKSAQKAHNSVNKMGDRDLRTDYNEPGTIPSAARGLDDTVSIASRSR
                     EVSGFRGGGGGPAYGPPPSLHAREGRYERRLDGTDSSSSSSDDSPARSVQSAAVPAPT
                     SQLLSSLEKDEPRKSFGIKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEER
                     YGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGPETESENEFRPLDERIDEFHPK
                     ATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAI
                     KKMDGEYLGNNRLKLGFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRL
                     KGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRESQLAFYHCMEKSGQDIRDF
                     YEMLAERREERRGSYDYSQDRTYYENVRTPGTYAEDSRRDYPARGREFYSEWETYQGD
                     YYESRYYDDPREYRDYRNDPYEQDIREYSYRQRERERERERFESDRDRDHERRPIERS
                     QSPVHLRRPQSPGASPSQSERLPSDSERRIYSRSSDRSGSCSSLSPPRYDKLDKPRLE
                     RYTKNEKTDKERTFDPERVERERRLIRKEKVEKDKTDKQKRKGKVHSPSSQSSETDQE
                     NEREQSPEKSRSSNKLSREKADKEGVAKNRLELMPCVVLTRVKEKEGKVIDHTPLEKL
                     KAKLDNDTVKSSALDQKLQVSQTEPAKSELSKLESVRMKAPKERGLSSHIEVVDKEGR
                     PKPRKHLKPEQTVDGVSAVDLEKLEARKRRFADSNLKAERQKSDVKKSSPEMEDARVL
                     LKKQPDISSRDVILLREGESEKKTVRKEILKRESKKIKLDRLNAVPSSRECQELASIS
                     VGTVSRPNSDLQARLREPVGESVENQEIQSKKPTPSKPPLKQLELLDDQGPEREDNRK
                     NYCSLRDEPLECKSGQDKPHSVNTEEKIGIDIDHTQSYRKQMEQSRRKQQMEMEIAKS
                     EKFGSPKKDVDEYERRSLVHEVGKPPQDVTDDSPPSKKKRMDHVDFDICTKRERNYRS
                     SRQISEDSERTGGSPSVRHGSFHEEDDPVGSPRVMSIKGSPKVDEKGLPYSNITVREE
                     SLKFNPYDSSRREQMADMAKIKLSVLNPEDELSRWDSQMKQDASRFDVSFPNSIIKRD
                     SLRKRSVRDLEPGEVPSDSDEDGEHKSHSPRASALFESSRLSFLLRDREDKLRERDER
                     LSSSLERNKFYSFALDKTITPDTKALLERAKSLSSSREENWSFLDWDSRFANFRNNKD
                     KEKVDSAPRPIPSWYMKKKKIRTDSEGKMDDKKDDHKEEEQERQELFASRFLHSSIFE
                     QDSKRLQHLERKDEESDFVSGRLYGRQTSDGVNSTTDLIQEPVVLFHSRFMELTRMQQ
                     KEKEKDQKPKEVEKQEDTEDHPKTSESASENKESELKTPPSIGPPSVTVVAPESAASS
                     LEKTAAERTGEVPSVTEEKTTQPASVSEEAKPVSDLTPIAVEQPEQVDLPPGVDTRKD
                     VAETPLVVEENSSVDQLPYLDAKPPTPGASFSQVEISVDPEPDSTQTLSKPTQKPEEA
                     DEPKVEKPDSAANVEPNASQNAEDVHEVPPPATEGVEVDPPVAAKDKKPNKSKRSKTP
                     IQAAAASIVEKPVTRKSERIDREKLKRSSSPRGEAQKLLELKMEAEKITRAASKNSSA
                     DPEHPEPSLPLSRTRRRNVRSVYATVGDHESRSPVKEPVEQPRVTRKRLERELQEAAV
                     VPTTPRRGRPPKARRRADEDDETEAKEPVETVKPAEGWRSPRSQKVAAGVQQGKKGKN
                     EPKVDAERPEATTEVSPQLNVKENNTKSKTDKEEAGSEQKRDRKEISTDKNPPETPPV
                     EVVEKKTAPEKNSKSKRGRSRNSRSAVDKSANLRNVEATVSPGAAAGPAGLPAEETAA
                     VAAVSPEKSESPQEEASLSLRLSSEPADLDKEPEKEDGSASKPSPEANQLAKQMELEQ
                     AVENIEKLAETSTPTAFKAAAADAPERLSTEDRDKPAHQASETELAAAIGSIINDISG
                     EPENFPAPPPYPAESQTDLQSPEEGMEPETDEAVSGILETEAATESSRPPGSAPDPSA
                     GPADTKEARENSSETSHPVPQVKGSKEAEVTLARKDKGRQKTTRSRRKRNTNKKTGGA
                     TETHVSEPDQVQSKSPATSEGATTQPPETPQEEKQSDKPQSTPPESCASDPSKTTSQG
                     NLSQESSVEEKTPTKASALPDLPPASQPAPVDDEPRARFKVHSIIESDPVTPPSDSSM
                     PTPPIPSVTIAKLPPPVAAGGIPHQSPPTKVTEWITRQEEPRAQSTPSPALPPDTKAS
                     DIDTSSSTLRKILMDPKYVSATGVTSTSVTTAIAEPVSAAPCLHEALPPPVESKKPLL
                     EEKAAAPVTNTSDTQVSEVPVATDKEKVTPVIAPKITSVISRMPVSIDLENSQKITLA
                     KPAPQTLTGLVSALTGLVNVSLVPVNALAGPVNALKGPVKGSVATLKGLVNTPAGPVN
                     VLKGPVNVLTGPVNVLTAPVNAATGTVNTAAGAVTVSAGAVTAASGVVTATTTGAVTV
                     AGAVIAPSAKCRQRSGTNDNSRFHPGSMSVIDDRPADTGSGAGLRVNTSEGVVLLSYS
                     GQKTEGPQRISAKISQIPPASAMDIEFQQSVSKSQVKPDSVMPSQPPPKGPQAPSGYA
                     NVATHSTLVLTAQTYNASPVISSVKADRPSLEKPEPIHLSVSTPVTQGGTVKVLTQGI
                     NTPPVLVHNQLVLTPSIVTTNKKLADPVTLKIETKVLQPANLGSTLTPHHPPALPSKL
                     PAEVNHVTSGPSTPTDRTVSHLAATKPDVHSPRPSGPAPSPFPRACHPSSTTSAALST
                     NATVMLAAGIPVPQFISSIHPEQSVIMPPHSITQTVSLSHLSQGEVRMNTPTLPSITY
                     SIRPETLHSPRAPLQPQQIEVRAPQPATAGVPALASQHPPEEEVHYHLPVARAAAPVQ
                     SEVLVMQSEYRLHPYTVPRDVRIMVHPHVTAVSEQPRAADGVVKVPPASKAPQQPGKE
                     AAKMADAKAAPAPAPAPHGEARILTVTPSNQLQGLPLTPPVVVTHGVQIVHSSGELFQ
                     EYRYGDVRTYHSPAQLAHTPFPAAASIGLPSRTKAPAQGLPPEGEPSQPLQPAQSAQP
                     AQSTQTSQLSQPGQPPSSKMPPVSQEAKGTQTGVEQPRLPNVPGNRPAEPHAQVHRAQ
                     AETSQTSYPSPVSVSMKPDLPAPLPAQAAPKQPLFVPTPSGPSPPPGLALPHTETQPA
                     PKQDSSPHLTSQRPVDMVQLLKKYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLP
                     LSEGGPPLRIAQRMRLEASQLEGVARRMTVETDYCLLLALPCGRDQEDVVSQTESLKA
                     AFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLLASISHISP
                     HLMIVIASV"
     misc_feature    363..587
                     /gene="SPEN"
                     /note="RNA recognition motif 1 (RRM1) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM1_SHARP; cd12348"
                     /db_xref="CDD:409784"
     misc_feature    873..1094
                     /gene="SPEN"
                     /note="RNA recognition motif 2 (RRM2) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM2_SHARP; cd12349"
                     /db_xref="CDD:409785"
     misc_feature    1173..1394
                     /gene="SPEN"
                     /note="RNA recognition motif 3 (RRM3) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM3_SHARP; cd12350"
                     /db_xref="CDD:409786"
     misc_feature    1395..1625
                     /gene="SPEN"
                     /note="RNA recognition motif 4 (RRM4) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM4_SHARP; cd12351"
                     /db_xref="CDD:409787"
     misc_feature    <1764..3626
                     /gene="SPEN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <4632..6143
                     /gene="SPEN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <6498..7802
                     /gene="SPEN"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <8688..10223
                     /gene="SPEN"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    10287..10769
                     /gene="SPEN"
                     /note="SPOC (Spen paralog and ortholog C-terminal) domain
                     found in SMART/HDAC1-associated repressor protein (SHARP)
                     and similar proteins; Region: SPOC_SHARP; cd21543"
                     /db_xref="CDD:439206"
     misc_feature    order(10317..10328,10419..10439,10473..10475,10581..10586,
                     10593..10595,10602..10610,10650..10652,10656..10658)
                     /gene="SPEN"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:439206"
ORIGIN      
        1 gccacagcgc cagctccgtc gtagtcgctg ccgcccgggt ctcgctcgcc cctcctaccc
       61 gctccccctc ccgccgcctc ccgagcgcat gcgccgccgg agcgcggggg tcggcttcgg
      121 gtgtgtggtg gcggcagagc ggagctgcga ggcccgagag tcagaacctg ggggagaggg
      181 atggtctctg cacggggggg agccggagga gccgccgccg ctgccgacgc caccgccgca
      241 gccgccgccg ccgccgcctc ggcgcccgcc tcccggcgct gacgggctcg tacgaagccg
      301 gcgaggggga accagcacca gcggtcgccg gcacaccgcc cagcatggtc cgggaaacca
      361 ggcacctctg ggtgggcaac ttaccggaga atgtgcggga agagaagatc atcgagcatt
      421 tcaaacgata tggccgcgtg gaaagtgtca aaattctccc caagaggggt tctgaaggag
      481 gagtggctgc ctttgtggat tttgtggaca tcaaaagtgc acagaaggct cacaactcag
      541 tcaacaaaat gggagataga gacctacgca cggattataa tgaaccaggc accattccga
      601 gcgctgctcg gggattggat gatacagttt ccatagcatc tcgtagtaga gaggtttctg
      661 ggttcagagg aggtggtgga gggcctgctt atggcccccc accatcactt catgcacgag
      721 aaggacgtta tgagcggaga cttgatggca ctgattccag cagtagttca agtgatgact
      781 ctccagcccg atcagttcaa tctgcagcag tcccagcacc cacttcccag ttgctttcat
      841 ccctggaaaa agatgagccg cgtaaaagtt ttgggatcaa ggttcagaat cttccagtac
      901 gctccacaga tacaagtctc aaagatggcc ttttccatga atttaagaaa tttggaaagg
      961 tgacttcagt gcagatacat ggaacttcag aagaaaggta tggtctggta ttcttccggc
     1021 agcaggagga ccaagaaaaa gcattgactg catcaaaagg aaaacttttc ttcggcatgc
     1081 agattgaagt aacagcatgg atagggccag aaacagaaag tgaaaatgaa tttcgccctt
     1141 tggatgaaag gatagatgaa tttcacccca aagcaacaag aactctcttt attggtaacc
     1201 ttgaaaaaac cactacttat catgatcttc gcaacatctt ccaacgcttt ggagaaattg
     1261 tggatattga tattaagaaa gtaaatggag ttcctcagta tgcgttcttg caatactgtg
     1321 atattgccag cgtttgtaag gctattaaga agatggatgg ggaatacctt ggaaataatc
     1381 gtctcaagct gggttttgga aagagcatgc ctacaaactg tgtgtggtta gatgggcttt
     1441 cttcaaacgt atcggatcaa tatttaacac gacatttctg ccgatatggg cctgtggtga
     1501 aggtggtgtt tgaccgctta aaaggcatgg ccctggttct ctacaatgaa attgaatatg
     1561 cacaagcagc tgtaaaagag accaagggga ggaaaatcgg tgggaataaa attaaggtgg
     1621 attttgcaaa tcgggaaagt cagctggcat tttatcactg tatggaaaaa tctggtcaag
     1681 atatcagaga cttctatgaa atgttagcag aaagaagaga agaaagaagg ggatcgtatg
     1741 actatagcca agatcgtaca tattatgaga atgttcgtac tccaggcaca tatgctgagg
     1801 attccagacg ggactatcca gctcgaggga gagaatttta ttcagaatgg gaaacttacc
     1861 aaggagacta ctatgaatca cgatattacg atgatccccg ggaatatagg gattacagaa
     1921 atgatcctta tgaacaagat attcgggaat acagttacag gcaaagggaa cgagaaagag
     1981 aacgtgaaag atttgagtct gaccgggaca gagaccacga gaggaggcca attgaacgca
     2041 gtcagagtcc agttcacttg cgacgcccac agagtcctgg agcatcaccc tcacagtcag
     2101 agagattgcc tagtgattcc gagaggagga tttacagccg atcctcggac cggagtggaa
     2161 gctgtagctc actttcccct ccaagatatg ataaacttga caaacctcgt ttggaacgct
     2221 atacaaaaaa cgaaaagaca gataaagaac gaacttttga tcctgagaga gtggaaagag
     2281 agagacgttt aataaggaag gaaaaggtgg agaaggacaa aactgacaag cagaaacgga
     2341 aaggaaaagt tcattcccct agttctcagt cttcagaaac agaccaagaa aatgagagag
     2401 aacaaagccc tgaaaaatca aggagttcta ataaactgag cagagagaaa gctgacaaag
     2461 aaggagtagc aaaaaaccgc ttggaactca tgccttgtgt ggttttgact cgagtgaaag
     2521 aaaaagaggg gaaggttatt gaccatactc ctttggaaaa gctgaaagcc aagcttgata
     2581 atgacactgt caagtcttct gccttagatc agaaacttca ggtctctcag acagagcctg
     2641 caaaatctga gttgtctaaa ctagaatctg ttagaatgaa agcgccaaag gaaagggggc
     2701 tttcaagcca catagaagtg gtagataagg aaggcaggcc taaacccagg aagcacctaa
     2761 aaccagagca aactgttgat ggggtaagtg ctgtggatct ggagaagctg gaagcgagga
     2821 aaaggcgttt tgcagattcc aatttgaaag cagaaaggca aaaatcagat gttaagaaaa
     2881 gtagcccaga gatggaagat gctcgggtgc ttttaaagaa acagcctgac atatcatcta
     2941 gagatgtcat tctactgagg gaaggagagt ctgagaaaaa gacggtgagg aaagaaattc
     3001 ttaaaagaga atctaaaaaa atcaaactag acagacttaa tgctgttccc agctccagag
     3061 agtgtcagga gcttgccagc atttctgtgg ggactgtatc aaggcccaac tcagatctgc
     3121 aagcaaggct gagagaacca gtaggtgaat ctgtggaaaa ccaagaaatc cagtccaaaa
     3181 aacccactcc ttcaaaacca ccacttaaac agctggagct attagatgat caaggaccag
     3241 agagagaaga taataggaaa aactattgca gtcttcgtga tgaaccactt gaatgtaaat
     3301 caggccaaga taaaccacat tcagtaaata ctgaagaaaa aattggcatt gatattgatc
     3361 acacgcagag ttaccgaaaa caaatggagc agagtcgtag aaaacagcag atggagatgg
     3421 aaatagccaa gtccgaaaag tttggcagtc ctaaaaaaga tgtggatgaa tatgaaagac
     3481 gtagtcttgt tcacgaggtc ggcaaacccc ctcaggatgt cactgacgac tctcctccca
     3541 gcaaaaagaa gaggatggac catgttgatt ttgacatctg caccaagaga gaacggaact
     3601 acagaagttc acgccaaatc agtgaagatt ctgaaaggac tggtggttcc cccagtgtcc
     3661 gacatggttc cttccatgag gaagatgacc ctgttggttc ccctagggta atgtcaataa
     3721 aagggtctcc taaagtagat gaaaaaggtc tcccgtattc taatataaca gtcagagaag
     3781 agtccttaaa atttaatcct tatgattcta gcaggagaga acagatggca gacatggcca
     3841 aaataaagct atctgtcttg aatcctgaag atgaactaag tcggtgggac tctcaaatga
     3901 aacaagatgc cagcagattt gatgtgagtt tcccaaacag cataattaag agagacagcc
     3961 ttcgaaagag gtctgtacgt gacttggaac ctggtgaggt gccttctgat tctgatgaag
     4021 atggtgaaca caaatctcac tcacccagag cctctgcatt atttgaaagt tctcggttgt
     4081 cttttttatt gagggacaga gaagacaaac tacgtgagag agatgaaaga ctctccagtt
     4141 ctttagaaag gaacaaattt tattcttttg cattggataa gacaatcaca ccagacacta
     4201 aggctttgct tgaaagagct aaatccctgt cttcatctcg agaagaaaat tggtcttttc
     4261 ttgattggga ctcccgattt gctaattttc gaaacaacaa agataaagaa aaggttgact
     4321 ctgctccaag acctattcca tcctggtaca tgaaaaagaa gaaaattcgg actgattcag
     4381 aaggaaaaat ggatgataag aaagatgacc ataaagaaga agaacaggaa aggcaagagt
     4441 tatttgcttc tcgtttttta cacagctcaa tctttgaaca agattctaag cgattgcagc
     4501 atctagagag aaaagatgaa gaatctgact tcgtttctgg caggttatat gggaggcaga
     4561 catctgatgg agtgaatagc acaactgatt tgattcaaga gccagtagtt cttttccata
     4621 gcagatttat ggaactcaca cgaatgcaac agaaagaaaa agaaaaagac caaaaaccca
     4681 aagaggtcga gaaacaggag gatacagagg atcaccccaa gacctcagaa tctgcttctg
     4741 aaaataaaga gtcagaactg aaaactccac cttcgattgg gcctcctagt gtcacagttg
     4801 tagctccaga gtctgcagca tcatcactgg agaagacagc tgctgaaaga acaggagagg
     4861 tgccttcagt gacagaagag aagaccactc agccagcctc tgtctcagaa gaagcaaaac
     4921 ctgtatctga tctgactccc atcgctgtgg aacaacctga acaagtagac ttgcccccag
     4981 gagtggacac caggaaagac gttgctgaga ctcctttagt tgttgaagaa aactcatcag
     5041 tcgatcagct gccttatttg gacgccaagc ctccaactcc tggggcctca ttttcccagg
     5101 tagagatcag tgtagatcca gagcctgaca gtacccagac actttcaaaa ccgactcaga
     5161 agcctgagga agccgatgag ccaaaagtgg agaagccaga ctcagctgct aatgtcgaac
     5221 ctaatgcaag tcaaaacgct gaagatgttc acgaggtccc gcctccagct actgaaggtg
     5281 tagaggttga ccctccagtt gctgcaaaag ataaaaagcc gaacaaaagt aaacgttcca
     5341 agacccccat tcaggcagct gcagcaagta tcgtggagaa gcctgtcaca aggaagagtg
     5401 agaggataga ccgggaaaag ctcaagcggt ccagttctcc tcggggagaa gcacagaagc
     5461 ttttagaatt gaagatggag gcagagaaga ttacaagggc tgcctctaaa aactcatccg
     5521 cggaccctga acaccctgag ccaagcttgc ccctcagccg aaccaggcgc cggaatgtaa
     5581 ggagtgtcta cgcaaccgtg ggtgaccatg agagccgctc tcccgtcaag gagcctgttg
     5641 agcaaccacg agtgaccagg aagagactgg agcgggagct gcaggaggct gcagtggttc
     5701 ctacaacccc taggaggggg aggcctccaa aagcacgccg tcgagctgat gaagatgatg
     5761 agaccgaggc aaaagagcca gtggagacag tcaagccagc cgaggggtgg aggtccccac
     5821 gctcccagaa agtagctgct ggtgtccaac aggggaaaaa ggggaaaaat gagccaaaag
     5881 ttgatgctga acgtcctgag gccaccactg aggtgagtcc ccaattaaac gtgaaagaaa
     5941 ataacacaaa atccaagact gataaagaag aagcaggaag tgaacaaaaa cgtgatagaa
     6001 aagaaattag cacagacaaa aatccacccg aaaccccccc agttgaagtg gtggagaaaa
     6061 aaacagcccc tgagaaaaac tccaagtcca agagaggaag atctcgaaac tcgagatcag
     6121 cagtggacaa atctgcaaat ctgagaaatg tggaagccac tgtaagtccc ggcgcggctg
     6181 caggccctgc gggactgccg gcggaggaga cggctgcggt cgcggcagtt tcccctgaga
     6241 agagcgagag tccccaagag gaggctagtt tatcgttgcg tttgagcagt gagccagctg
     6301 atctggacaa ggaaccagag aaggaagatg ggtctgcctc taagccgtcc ccggaagcaa
     6361 atcagttagc caagcagatg gagctggagc aggccgtgga gaacatcgag aagctcgcgg
     6421 aaacctccac ccccacggct ttcaaggcgg cagctgcaga tgccccagag cgcctctcca
     6481 cagaggaccg ggacaagccc gcacaccagg ccagcgaaac agagctggct gcggccatcg
     6541 gttccatcat caatgacatt tctggggagc cagaaaactt cccagcacct ccaccttacc
     6601 ctgcagagtc tcagacagat cttcagtctc ctgaggaagg aatggagcct gagaccgatg
     6661 aggctgtgtc tggcatcttg gagactgagg ctgctacaga atcttctagg ccaccaggca
     6721 gtgcacctga cccctcagca ggcccagcag ataccaagga agccagagag aacagcagcg
     6781 aaacctccca cccagtgccg caagtcaaag gatcaaaaga agcagaagtt actcttgctc
     6841 ggaaagacaa agggcgccag aagaccactc gatcacgccg caaacggaat acaaacaaga
     6901 aaactggggg cgctacagag acccatgtct ctgaacctga ccaagttcaa agcaagagcc
     6961 ctgctacaag cgagggggcc acgacacagc ccccagaaac tccacaggaa gaaaagcaga
     7021 gtgacaagcc ccagtccact ccccctgagt catgtgcttc tgacccaagc aagactacat
     7081 cccagggaaa tttgtcccaa gaaagcagtg ttgaagaaaa gactccaacc aaagcatctg
     7141 cgctcccaga ccttcccccg gcctcacagc cagcccccgt ggatgacgag cctcgagcca
     7201 gattcaaggt gcactccatc attgaaagtg acccggtgac cccgcccagt gactcaagca
     7261 tgcccactcc cccaattcct tccgtaacga tagcaaagct cccaccccct gtcgctgctg
     7321 gggggatccc acaccagagt ccgccgacga aggtgacaga gtggatcacg aggcaggagg
     7381 agccacgggc gcaatccacc ccatctccgg cccttccccc agacacaaag gcctctgaca
     7441 tagacaccag ctccagtacg ctgaggaaga tcctcatgga ccctaaatac gtatctgcca
     7501 cgggcgtcac ttccacgagt gtcacaactg ccattgcaga gcctgtcagt gctgcccctt
     7561 gcctgcatga ggcactaccc cctccggttg aatctaaaaa gcctctttta gaagaaaaag
     7621 cagcagctcc agtaactaac acctccgaca cacaggtctc agaggttcca gtggccactg
     7681 acaaagaaaa ggtgactcca gtcattgctc ccaaaattac ttctgttatt agccggatgc
     7741 ctgtcagcat tgatttggag aattcgcaaa agataactct ggcgaagcca gctcctcaga
     7801 ccctgactgg cctggtgagc gccctgaccg gcctggtgaa tgtctccttg gttccagtga
     7861 atgcactggc cggcccagtg aatgccctga aaggccctgt gaagggctca gtggccacgc
     7921 tgaaaggctt ggtgaacact cccgctggcc ctgtgaatgt cctaaaggga ccagtgaatg
     7981 ttctgacggg gcccgtgaat gttctcacgg ctccagtgaa cgccgccacg ggcacagtga
     8041 acactgccgc gggtgcggtg acagtttccg cgggtgcggt gactgctgca tctggggttg
     8101 tgactgccac gacaacaggt gcagtgactg tggcaggtgc agtgattgca ccatccgcaa
     8161 agtgccgaca gagatccggc actaatgaca acagtcggtt ccacccaggg tctatgtctg
     8221 tgattgatga ccgtccggca gacacgggct ctggcgctgg gctgcgtgtg aacacttcag
     8281 aaggggttgt gctgctgagc tattcggggc agaagactga aggcccacag cggatcagtg
     8341 ccaagattag ccagatcccc ccagcaagtg caatggacat tgagtttcaa cagtcggtgt
     8401 ccaagtccca ggtcaaaccc gattctgtca tgccatctca gcctccgccc aaaggccctc
     8461 aggctccttc aggctatgca aacgtggcca cccattctac tctggtacta actgcccaga
     8521 cctataacgc atctcctgtg atttcatcgg ttaaggccga ccgtccgtcc ttggagaagc
     8581 ctgagcccat tcatctctct gtgtccacac ccgtcaccca gggtggcaca gtaaaggtcc
     8641 tcacccaggg cataaacaca cccccggtgc tggttcacaa ccagctggtc ctcaccccaa
     8701 gcatagtcac cactaacaaa aagcttgctg accccgtcac cctcaaaata gagactaagg
     8761 tccttcagcc agcaaacctg gggtccactc ttacacccca ccaccctcct gctctgccca
     8821 gcaaactgcc tgcagaagtg aaccacgtca cctcggggcc cagcaccccg acagatcgga
     8881 ctgtctccca tttggcagcc accaagccag atgtgcattc ccctcgacct agcgggccgg
     8941 ctccgtcccc attcccgagg gcatgccacc ccagcagcac cacatccgcc gcgctctcca
     9001 ctaatgccac ggtcatgctg gctgcgggca ttcctgtgcc gcagttcatc tctagcatcc
     9061 acccagagca gtccgtcatc atgccacccc acagcatcac ccagaccgtg tcgctcagcc
     9121 acctgtcaca gggcgaggtg aggatgaaca cgcccacgtt gcccagcatc acctacagca
     9181 tccggccaga gacacttcac tctcctcggg cccccctgca gccccagcaa atagaggtcc
     9241 gggccccgca gccagccaca gctggtgtgc ccgccctggc ctcccagcac cctccagagg
     9301 aagaagtgca ttatcacctc cccgttgctc gagccgcagc ccctgtgcag tcggaggtgc
     9361 tggtcatgca gtctgagtac cgactacacc cgtacactgt gccccgggat gtgaggatca
     9421 tggtgcatcc tcacgtgacg gccgtcagcg agcagccccg ggcagcggac ggggtggtga
     9481 aagtgccacc agccagcaag gcccctcagc agccagggaa agaagccgcc aagatggcag
     9541 atgccaaagc cgcccccgcc cccgcccccg ccccccacgg tgaggcccgc atcctcacag
     9601 tcacacccag caaccagctg caggggctgc ctctgacccc gcctgtggtg gtgacgcacg
     9661 gggtgcagat tgtgcactcc agcggggagc tcttccagga gtacaggtac ggggacgtcc
     9721 gcacctacca cagcccggct cagctcgcgc acacgccgtt tcctgctgct gcctccattg
     9781 gcctgccttc ccggaccaag gctcctgctc agggcctccc tcccgaaggc gagccctcgc
     9841 agcctctgca gcccgcgcag tccgcacagc cggcccagtc cacgcagacc tcccagctca
     9901 gccagccagg ccagccacca agcagcaaga tgcctccagt ctcccaggag gcaaagggca
     9961 cccagacagg agtagagcag ccgcgcctcc caaacgtacc tggaaacagg ccggcggagc
    10021 ctcatgccca ggtccacagg gctcaggcgg aaacaagcca gacctcctat ccttcccccg
    10081 tgtctgtctc gatgaagcct gacctcccgg cccctcttcc tgctcaggct gccccaaagc
    10141 agccgttgtt tgtccctaca ccctcaggcc ccagcccccc tccaggactg gctctgccgc
    10201 atactgaaac ccagcccgcc cccaaacaag attcctctcc tcatttgact tcccagagac
    10261 ctgtggatat ggtccagctt ctgaagaagt accccatcgt gtggcagggc ctcctggccc
    10321 tcaagaacga cacagctgct gtgcagctcc acttcgtctc tggcaacaat gtcctggccc
    10381 atcggtccct gccgctctct gaaggagggc cccccctgag gattgcccag aggatgcggc
    10441 tggaggcctc acagctggag ggggttgccc gaaggatgac ggtggagaca gattactgtc
    10501 tgctgctggc tctgccctgt ggccgtgacc aagaggacgt cgtgagccag accgagtccc
    10561 tcaaggctgc cttcatcacg tatctgcagg ccaagcaggc ggcaggcatc atcaacgttc
    10621 ccaaccctgg ctccaatcag cctgcctacg tgctgcagat cttcccgccc tgcgaattct
    10681 ctgagagtca cctgtcccgt ctggcccccg acctcctggc cagcatctcc cacatttctc
    10741 cccacctcat gatcgtcatt gcctccgtgt gagccaccga atggtcacca ctcggcgtat
    10801 cttcctgagg ctctgcagca aaaaataaaa cacaggacaa cccagccaag tggaggaaga
    10861 agctgccggg gggggacaga ctccactgcc agacggccag cctcgctctc ctacccgccc
    10921 gcccgcccgg ctcagtcaga cagaccccgc ctgggcagtg gtgctgctac tcgtatgttt
    10981 acatgacatt tagcccaagg acagaccacc aaccaatgga cttgcagaca ccttgaggct
    11041 gggtttctct ctcctcctct tggagaaaag gaacagggca gtggaatttt tttgtttttg
    11101 tttttaagaa acaaaacaga actgcctttg cactaaatta gtgacttgga cttttgcaca
    11161 gtgaagacag gctgtgacac tctggatgtc ttggtgtacg tgaacacaca tggcacacac
    11221 atcgcagact ctcatgcagg acttcaaact tctgctgaaa ccttggggtc aaggaacatt
    11281 tcattgggct gtgttgtccc cacccctccc ttccccttgc tcatttggat gtcatctctc
    11341 tttaattctc ctgctgccac catctctgat tcacccagga tgtacagttt acaatcagaa
    11401 aagagcaaac agaaggattt tctctcttgg tggaatatgc agaacttggg atgtgtgtat
    11461 atataaatat ataatatata taaatatata taatactgac ttaaaaatca aattccccga
    11521 catacatttt ttttaatctg tgccaaaaat gtgttttcag agaaaatctt attttcatac
    11581 tcagactttg tattgtcact catttgtata agtgcgcttc gttacagcac gggccctgct
    11641 cccgcaactt ggaagtgtca cacacacaaa aagactgtac aaaagactgg cttcccttct
    11701 tcctgtgacc ttgacctctc cccccaactt cctaacactt attaatttat gaaaactgtt
    11761 tttctcagcg cagttttgtt ttgtgtgtcc attggattac aaactttatt aaaaaataca
    11821 gaaca
//
LOCUS       XM_032650834           12795 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spen family transcriptional repressor
            (SPEN), transcript variant X4, mRNA.
ACCESSION   XM_032650834
VERSION     XM_032650834.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12795
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..12795
                     /gene="SPEN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 23 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763253"
     CDS             2047..11742
                     /gene="SPEN"
                     /codon_start=1
                     /product="msx2-interacting protein isoform X4"
                     /protein_id="XP_032506725.1"
                     /db_xref="GeneID:116763253"
                     /translation="MQIEVTAWIGPETESENEFRPLDERIDEFHPKATRTLFIGNLEK
                     TTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNR
                     LKLGFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIE
                     YAQAAVKETKGRKIGGNKIKVDFANRESQLAFYHCMEKSGQDIRDFYEMLAERREERR
                     GSYDYSQDRTYYENVRTPGTYAEDSRRDYPARGREFYSEWETYQGDYYESRYYDDPRE
                     YRDYRNDPYEQDIREYSYRQRERERERERFESDRDRDHERRPIERSQSPVHLRRPQSP
                     GASPSQSERLPSDSERRIYSRSSDRSGSCSSLSPPRYDKLDKPRLERYTKNEKTDKER
                     TFDPERVERERRLIRKEKVEKDKTDKQKRKGKVHSPSSQSSETDQENEREQSPEKSRS
                     SNKLSREKADKEGVAKNRLELMPCVVLTRVKEKEGKVIDHTPLEKLKAKLDNDTVKSS
                     ALDQKLQVSQTEPAKSELSKLESVRMKAPKERGLSSHIEVVDKEGRPKPRKHLKPEQT
                     VDGVSAVDLEKLEARKRRFADSNLKAERQKSDVKKSSPEMEDARVLLKKQPDISSRDV
                     ILLREGESEKKTVRKEILKRESKKIKLDRLNAVPSSRECQELASISVGTVSRPNSDLQ
                     ARLREPVGESVENQEIQSKKPTPSKPPLKQLELLDDQGPEREDNRKNYCSLRDEPLEC
                     KSGQDKPHSVNTEEKIGIDIDHTQSYRKQMEQSRRKQQMEMEIAKSEKFGSPKKDVDE
                     YERRSLVHEVGKPPQDVTDDSPPSKKKRMDHVDFDICTKRERNYRSSRQISEDSERTG
                     GSPSVRHGSFHEEDDPVGSPRVMSIKGSPKVDEKGLPYSNITVREESLKFNPYDSSRR
                     EQMADMAKIKLSVLNPEDELSRWDSQMKQDASRFDVSFPNSIIKRDSLRKRSVRDLEP
                     GEVPSDSDEDGEHKSHSPRASALFESSRLSFLLRDREDKLRERDERLSSSLERNKFYS
                     FALDKTITPDTKALLERAKSLSSSREENWSFLDWDSRFANFRNNKDKEKVDSAPRPIP
                     SWYMKKKKIRTDSEGKMDDKKDDHKEEEQERQELFASRFLHSSIFEQDSKRLQHLERK
                     DEESDFVSGRLYGRQTSDGVNSTTDLIQEPVVLFHSRFMELTRMQQKEKEKDQKPKEV
                     EKQEDTEDHPKTSESASENKESELKTPPSIGPPSVTVVAPESAASSLEKTAAERTGEV
                     PSVTEEKTTQPASVSEEAKPVSDLTPIAVEQPEQVDLPPGVDTRKDVAETPLVVEENS
                     SVDQLPYLDAKPPTPGASFSQVEISVDPEPDSTQTLSKPTQKPEEADEPKVEKPDSAA
                     NVEPNASQNAEDVHEVPPPATEGVEVDPPVAAKDKKPNKSKRSKTPIQAAAASIVEKP
                     VTRKSERIDREKLKRSSSPRGEAQKLLELKMEAEKITRAASKNSSADPEHPEPSLPLS
                     RTRRRNVRSVYATVGDHESRSPVKEPVEQPRVTRKRLERELQEAAVVPTTPRRGRPPK
                     ARRRADEDDETEAKEPVETVKPAEGWRSPRSQKVAAGVQQGKKGKNEPKVDAERPEAT
                     TEVSPQLNVKENNTKSKTDKEEAGSEQKRDRKEISTDKNPPETPPVEVVEKKTAPEKN
                     SKSKRGRSRNSRSAVDKSANLRNVEATVSPGAAAGPAGLPAEETAAVAAVSPEKSESP
                     QEEASLSLRLSSEPADLDKEPEKEDGSASKPSPEANQLAKQMELEQAVENIEKLAETS
                     TPTAFKAAAADAPERLSTEDRDKPAHQASETELAAAIGSIINDISGEPENFPAPPPYP
                     AESQTDLQSPEEGMEPETDEAVSGILETEAATESSRPPGSAPDPSAGPADTKEARENS
                     SETSHPVPQVKGSKEAEVTLARKDKGRQKTTRSRRKRNTNKKTGGATETHVSEPDQVQ
                     SKSPATSEGATTQPPETPQEEKQSDKPQSTPPESCASDPSKTTSQGNLSQESSVEEKT
                     PTKASALPDLPPASQPAPVDDEPRARFKVHSIIESDPVTPPSDSSMPTPPIPSVTIAK
                     LPPPVAAGGIPHQSPPTKVTEWITRQEEPRAQSTPSPALPPDTKASDIDTSSSTLRKI
                     LMDPKYVSATGVTSTSVTTAIAEPVSAAPCLHEALPPPVESKKPLLEEKAAAPVTNTS
                     DTQVSEVPVATDKEKVTPVIAPKITSVISRMPVSIDLENSQKITLAKPAPQTLTGLVS
                     ALTGLVNVSLVPVNALAGPVNALKGPVKGSVATLKGLVNTPAGPVNVLKGPVNVLTGP
                     VNVLTAPVNAATGTVNTAAGAVTVSAGAVTAASGVVTATTTGAVTVAGAVIAPSAKCR
                     QRSGTNDNSRFHPGSMSVIDDRPADTGSGAGLRVNTSEGVVLLSYSGQKTEGPQRISA
                     KISQIPPASAMDIEFQQSVSKSQVKPDSVMPSQPPPKGPQAPSGYANVATHSTLVLTA
                     QTYNASPVISSVKADRPSLEKPEPIHLSVSTPVTQGGTVKVLTQGINTPPVLVHNQLV
                     LTPSIVTTNKKLADPVTLKIETKVLQPANLGSTLTPHHPPALPSKLPAEVNHVTSGPS
                     TPTDRTVSHLAATKPDVHSPRPSGPAPSPFPRACHPSSTTSAALSTNATVMLAAGIPV
                     PQFISSIHPEQSVIMPPHSITQTVSLSHLSQGEVRMNTPTLPSITYSIRPETLHSPRA
                     PLQPQQIEVRAPQPATAGVPALASQHPPEEEVHYHLPVARAAAPVQSEVLVMQSEYRL
                     HPYTVPRDVRIMVHPHVTAVSEQPRAADGVVKVPPASKAPQQPGKEAAKMADAKAAPA
                     PAPAPHGEARILTVTPSNQLQGLPLTPPVVVTHGVQIVHSSGELFQEYRYGDVRTYHS
                     PAQLAHTPFPAAASIGLPSRTKAPAQGLPPEGEPSQPLQPAQSAQPAQSTQTSQLSQP
                     GQPPSSKMPPVSQEAKGTQTGVEQPRLPNVPGNRPAEPHAQVHRAQAETSQTSYPSPV
                     SVSMKPDLPAPLPAQAAPKQPLFVPTPSGPSPPPGLALPHTETQPAPKQDSSPHLTSQ
                     RPVDMVQLLKKYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLSEGGPPLRIAQ
                     RMRLEASQLEGVARRMTVETDYCLLLALPCGRDQEDVVSQTESLKAAFITYLQAKQAA
                     GIINVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLLASISHISPHLMIVIASV"
     misc_feature    2143..2364
                     /gene="SPEN"
                     /note="RNA recognition motif 3 (RRM3) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM3_SHARP; cd12350"
                     /db_xref="CDD:409786"
     misc_feature    2365..2595
                     /gene="SPEN"
                     /note="RNA recognition motif 4 (RRM4) found in
                     SMART/HDAC1-associated repressor protein (SHARP) and
                     similar proteins; Region: RRM4_SHARP; cd12351"
                     /db_xref="CDD:409787"
     misc_feature    <2734..4596
                     /gene="SPEN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <5602..7113
                     /gene="SPEN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <7468..8772
                     /gene="SPEN"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <9658..11193
                     /gene="SPEN"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    11257..11739
                     /gene="SPEN"
                     /note="SPOC (Spen paralog and ortholog C-terminal) domain
                     found in SMART/HDAC1-associated repressor protein (SHARP)
                     and similar proteins; Region: SPOC_SHARP; cd21543"
                     /db_xref="CDD:439206"
     misc_feature    order(11287..11298,11389..11409,11443..11445,11551..11556,
                     11563..11565,11572..11580,11620..11622,11626..11628)
                     /gene="SPEN"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:439206"
ORIGIN      
        1 taggcaggta ttttgtattt gatatggtga aacagaaact cgtatttagg ggccccagat
       61 ggatttaaag ttttgggcat tctcaatgtt tcctattttg ggttggaaac ggaagtgatt
      121 tctatcccag tggctggtat cttatggaat cgtagaggat atttcctgca gctggttgga
      181 tatctactcc tgagatataa agtggtggaa gattttgtat tgcagcatca tttttggagt
      241 tacctgtctt ctagaattaa ttattccttc tcttggataa tgttaagtct ttccttggat
      301 atatcccttc tacctgatgg agctacttgg ctacagattt tgtggttgta ctatatggaa
      361 tatttctgga atattagagc ctacagattc ttttagaatt tgatatctgc ttctcagttt
      421 tcactacaca aagtgtacaa acgaattgga ttgtcaccaa aaaacctagc agaccatacg
      481 attcaacctc ttggattcta caaacaatac tttaacttgg aaatgtgtac ttggatgaag
      541 aagagtgaag gcaatgcttc atttttccat tttggatcta cacagtttcc atgttggaat
      601 tatactcctt gatggaatgg ggaaaaattg agatgatgga cgttcctaaa tcctggaata
      661 tagccattct tttctgtttg ctggaatgta tgggatgtcg tgcagtcaag attccattag
      721 cccaggagaa gaggattact atcttgtttc ttaagcaagt tgctgtccaa ttaaaggtac
      781 tttagctttg aacacatggt gacgatcagt tgtggataca gcgatcaaaa ttgactgtgc
      841 tggatggcta caaaggtgaa ctgttggcga gcaactgtgc cttcctcatt tggtggaatt
      901 gtagaggata tttcctcttc tgtcagctgc ctgattcata cttagggctg gacatttttg
      961 tgaatgtgga tcaatttata attttctgct atctcaagaa agaagtctgg gggtttgaga
     1021 gttacagttt gtctgggact gcttgcttcc agtggaatta ttttatctgg tcattaagat
     1081 tttttttttc cttgtggttc atctaaatat catttgacac ccttacccat taagaaggtg
     1141 gattaccccc ataagagggg ccaaaattgg ggaagttatg ttcacaattc tctccctaga
     1201 tttaattggg attataggtc gtgtttccac acttggaaaa gggcttcaga taacagggag
     1261 cgtgcttatg aacatagtgc ctatggacac catgaacggg ggacgggagg atttgatcgg
     1321 acgagacatt acgatcagga ttactataga gatcctcgcg agcggacttt acaacatggg
     1381 ctctattata cttctcggag tcgaagtcca aaccgttttg atgctcatga tccccgatac
     1441 gaacctaggg ctcgggagca gtttacactg cccagtgtgg tacacaggga tatctacagg
     1501 gatgatatta cccgggaggt acgaggcaga aggccagagc ggaattacca gcacagcagg
     1561 agtcgctcac cacattcatc ccagtctaga aatcagtctc ctcagaggct ggctagccaa
     1621 gcgtctagac ccgcaaggtc ccctagcggc agcggctcta ggagtagatc ctccagtagt
     1681 gattcaatca gcagcagcag tagtaccagc agtgacagca ctgattccag cagtagttca
     1741 agtgatgact ctccagcccg atcagttcaa tctgcagcag tcccagcacc cacttcccag
     1801 ttgctttcat ccctggaaaa agatgagccg cgtaaaagtt ttgggatcaa ggttcagaat
     1861 cttccagtac gctccacaga tacaagtctc aaagatggcc ttttccatga atttaagaaa
     1921 tttggaaagg tgacttcagt gcagatacat ggaacttcag aagaaaggta tggtctggta
     1981 ttcttccggc agcaggagga ccaagaaaaa gcattgactg catcaaaagg aaaacttttc
     2041 ttcggcatgc agattgaagt aacagcatgg atagggccag aaacagaaag tgaaaatgaa
     2101 tttcgccctt tggatgaaag gatagatgaa tttcacccca aagcaacaag aactctcttt
     2161 attggtaacc ttgaaaaaac cactacttat catgatcttc gcaacatctt ccaacgcttt
     2221 ggagaaattg tggatattga tattaagaaa gtaaatggag ttcctcagta tgcgttcttg
     2281 caatactgtg atattgccag cgtttgtaag gctattaaga agatggatgg ggaatacctt
     2341 ggaaataatc gtctcaagct gggttttgga aagagcatgc ctacaaactg tgtgtggtta
     2401 gatgggcttt cttcaaacgt atcggatcaa tatttaacac gacatttctg ccgatatggg
     2461 cctgtggtga aggtggtgtt tgaccgctta aaaggcatgg ccctggttct ctacaatgaa
     2521 attgaatatg cacaagcagc tgtaaaagag accaagggga ggaaaatcgg tgggaataaa
     2581 attaaggtgg attttgcaaa tcgggaaagt cagctggcat tttatcactg tatggaaaaa
     2641 tctggtcaag atatcagaga cttctatgaa atgttagcag aaagaagaga agaaagaagg
     2701 ggatcgtatg actatagcca agatcgtaca tattatgaga atgttcgtac tccaggcaca
     2761 tatgctgagg attccagacg ggactatcca gctcgaggga gagaatttta ttcagaatgg
     2821 gaaacttacc aaggagacta ctatgaatca cgatattacg atgatccccg ggaatatagg
     2881 gattacagaa atgatcctta tgaacaagat attcgggaat acagttacag gcaaagggaa
     2941 cgagaaagag aacgtgaaag atttgagtct gaccgggaca gagaccacga gaggaggcca
     3001 attgaacgca gtcagagtcc agttcacttg cgacgcccac agagtcctgg agcatcaccc
     3061 tcacagtcag agagattgcc tagtgattcc gagaggagga tttacagccg atcctcggac
     3121 cggagtggaa gctgtagctc actttcccct ccaagatatg ataaacttga caaacctcgt
     3181 ttggaacgct atacaaaaaa cgaaaagaca gataaagaac gaacttttga tcctgagaga
     3241 gtggaaagag agagacgttt aataaggaag gaaaaggtgg agaaggacaa aactgacaag
     3301 cagaaacgga aaggaaaagt tcattcccct agttctcagt cttcagaaac agaccaagaa
     3361 aatgagagag aacaaagccc tgaaaaatca aggagttcta ataaactgag cagagagaaa
     3421 gctgacaaag aaggagtagc aaaaaaccgc ttggaactca tgccttgtgt ggttttgact
     3481 cgagtgaaag aaaaagaggg gaaggttatt gaccatactc ctttggaaaa gctgaaagcc
     3541 aagcttgata atgacactgt caagtcttct gccttagatc agaaacttca ggtctctcag
     3601 acagagcctg caaaatctga gttgtctaaa ctagaatctg ttagaatgaa agcgccaaag
     3661 gaaagggggc tttcaagcca catagaagtg gtagataagg aaggcaggcc taaacccagg
     3721 aagcacctaa aaccagagca aactgttgat ggggtaagtg ctgtggatct ggagaagctg
     3781 gaagcgagga aaaggcgttt tgcagattcc aatttgaaag cagaaaggca aaaatcagat
     3841 gttaagaaaa gtagcccaga gatggaagat gctcgggtgc ttttaaagaa acagcctgac
     3901 atatcatcta gagatgtcat tctactgagg gaaggagagt ctgagaaaaa gacggtgagg
     3961 aaagaaattc ttaaaagaga atctaaaaaa atcaaactag acagacttaa tgctgttccc
     4021 agctccagag agtgtcagga gcttgccagc atttctgtgg ggactgtatc aaggcccaac
     4081 tcagatctgc aagcaaggct gagagaacca gtaggtgaat ctgtggaaaa ccaagaaatc
     4141 cagtccaaaa aacccactcc ttcaaaacca ccacttaaac agctggagct attagatgat
     4201 caaggaccag agagagaaga taataggaaa aactattgca gtcttcgtga tgaaccactt
     4261 gaatgtaaat caggccaaga taaaccacat tcagtaaata ctgaagaaaa aattggcatt
     4321 gatattgatc acacgcagag ttaccgaaaa caaatggagc agagtcgtag aaaacagcag
     4381 atggagatgg aaatagccaa gtccgaaaag tttggcagtc ctaaaaaaga tgtggatgaa
     4441 tatgaaagac gtagtcttgt tcacgaggtc ggcaaacccc ctcaggatgt cactgacgac
     4501 tctcctccca gcaaaaagaa gaggatggac catgttgatt ttgacatctg caccaagaga
     4561 gaacggaact acagaagttc acgccaaatc agtgaagatt ctgaaaggac tggtggttcc
     4621 cccagtgtcc gacatggttc cttccatgag gaagatgacc ctgttggttc ccctagggta
     4681 atgtcaataa aagggtctcc taaagtagat gaaaaaggtc tcccgtattc taatataaca
     4741 gtcagagaag agtccttaaa atttaatcct tatgattcta gcaggagaga acagatggca
     4801 gacatggcca aaataaagct atctgtcttg aatcctgaag atgaactaag tcggtgggac
     4861 tctcaaatga aacaagatgc cagcagattt gatgtgagtt tcccaaacag cataattaag
     4921 agagacagcc ttcgaaagag gtctgtacgt gacttggaac ctggtgaggt gccttctgat
     4981 tctgatgaag atggtgaaca caaatctcac tcacccagag cctctgcatt atttgaaagt
     5041 tctcggttgt cttttttatt gagggacaga gaagacaaac tacgtgagag agatgaaaga
     5101 ctctccagtt ctttagaaag gaacaaattt tattcttttg cattggataa gacaatcaca
     5161 ccagacacta aggctttgct tgaaagagct aaatccctgt cttcatctcg agaagaaaat
     5221 tggtcttttc ttgattggga ctcccgattt gctaattttc gaaacaacaa agataaagaa
     5281 aaggttgact ctgctccaag acctattcca tcctggtaca tgaaaaagaa gaaaattcgg
     5341 actgattcag aaggaaaaat ggatgataag aaagatgacc ataaagaaga agaacaggaa
     5401 aggcaagagt tatttgcttc tcgtttttta cacagctcaa tctttgaaca agattctaag
     5461 cgattgcagc atctagagag aaaagatgaa gaatctgact tcgtttctgg caggttatat
     5521 gggaggcaga catctgatgg agtgaatagc acaactgatt tgattcaaga gccagtagtt
     5581 cttttccata gcagatttat ggaactcaca cgaatgcaac agaaagaaaa agaaaaagac
     5641 caaaaaccca aagaggtcga gaaacaggag gatacagagg atcaccccaa gacctcagaa
     5701 tctgcttctg aaaataaaga gtcagaactg aaaactccac cttcgattgg gcctcctagt
     5761 gtcacagttg tagctccaga gtctgcagca tcatcactgg agaagacagc tgctgaaaga
     5821 acaggagagg tgccttcagt gacagaagag aagaccactc agccagcctc tgtctcagaa
     5881 gaagcaaaac ctgtatctga tctgactccc atcgctgtgg aacaacctga acaagtagac
     5941 ttgcccccag gagtggacac caggaaagac gttgctgaga ctcctttagt tgttgaagaa
     6001 aactcatcag tcgatcagct gccttatttg gacgccaagc ctccaactcc tggggcctca
     6061 ttttcccagg tagagatcag tgtagatcca gagcctgaca gtacccagac actttcaaaa
     6121 ccgactcaga agcctgagga agccgatgag ccaaaagtgg agaagccaga ctcagctgct
     6181 aatgtcgaac ctaatgcaag tcaaaacgct gaagatgttc acgaggtccc gcctccagct
     6241 actgaaggtg tagaggttga ccctccagtt gctgcaaaag ataaaaagcc gaacaaaagt
     6301 aaacgttcca agacccccat tcaggcagct gcagcaagta tcgtggagaa gcctgtcaca
     6361 aggaagagtg agaggataga ccgggaaaag ctcaagcggt ccagttctcc tcggggagaa
     6421 gcacagaagc ttttagaatt gaagatggag gcagagaaga ttacaagggc tgcctctaaa
     6481 aactcatccg cggaccctga acaccctgag ccaagcttgc ccctcagccg aaccaggcgc
     6541 cggaatgtaa ggagtgtcta cgcaaccgtg ggtgaccatg agagccgctc tcccgtcaag
     6601 gagcctgttg agcaaccacg agtgaccagg aagagactgg agcgggagct gcaggaggct
     6661 gcagtggttc ctacaacccc taggaggggg aggcctccaa aagcacgccg tcgagctgat
     6721 gaagatgatg agaccgaggc aaaagagcca gtggagacag tcaagccagc cgaggggtgg
     6781 aggtccccac gctcccagaa agtagctgct ggtgtccaac aggggaaaaa ggggaaaaat
     6841 gagccaaaag ttgatgctga acgtcctgag gccaccactg aggtgagtcc ccaattaaac
     6901 gtgaaagaaa ataacacaaa atccaagact gataaagaag aagcaggaag tgaacaaaaa
     6961 cgtgatagaa aagaaattag cacagacaaa aatccacccg aaaccccccc agttgaagtg
     7021 gtggagaaaa aaacagcccc tgagaaaaac tccaagtcca agagaggaag atctcgaaac
     7081 tcgagatcag cagtggacaa atctgcaaat ctgagaaatg tggaagccac tgtaagtccc
     7141 ggcgcggctg caggccctgc gggactgccg gcggaggaga cggctgcggt cgcggcagtt
     7201 tcccctgaga agagcgagag tccccaagag gaggctagtt tatcgttgcg tttgagcagt
     7261 gagccagctg atctggacaa ggaaccagag aaggaagatg ggtctgcctc taagccgtcc
     7321 ccggaagcaa atcagttagc caagcagatg gagctggagc aggccgtgga gaacatcgag
     7381 aagctcgcgg aaacctccac ccccacggct ttcaaggcgg cagctgcaga tgccccagag
     7441 cgcctctcca cagaggaccg ggacaagccc gcacaccagg ccagcgaaac agagctggct
     7501 gcggccatcg gttccatcat caatgacatt tctggggagc cagaaaactt cccagcacct
     7561 ccaccttacc ctgcagagtc tcagacagat cttcagtctc ctgaggaagg aatggagcct
     7621 gagaccgatg aggctgtgtc tggcatcttg gagactgagg ctgctacaga atcttctagg
     7681 ccaccaggca gtgcacctga cccctcagca ggcccagcag ataccaagga agccagagag
     7741 aacagcagcg aaacctccca cccagtgccg caagtcaaag gatcaaaaga agcagaagtt
     7801 actcttgctc ggaaagacaa agggcgccag aagaccactc gatcacgccg caaacggaat
     7861 acaaacaaga aaactggggg cgctacagag acccatgtct ctgaacctga ccaagttcaa
     7921 agcaagagcc ctgctacaag cgagggggcc acgacacagc ccccagaaac tccacaggaa
     7981 gaaaagcaga gtgacaagcc ccagtccact ccccctgagt catgtgcttc tgacccaagc
     8041 aagactacat cccagggaaa tttgtcccaa gaaagcagtg ttgaagaaaa gactccaacc
     8101 aaagcatctg cgctcccaga ccttcccccg gcctcacagc cagcccccgt ggatgacgag
     8161 cctcgagcca gattcaaggt gcactccatc attgaaagtg acccggtgac cccgcccagt
     8221 gactcaagca tgcccactcc cccaattcct tccgtaacga tagcaaagct cccaccccct
     8281 gtcgctgctg gggggatccc acaccagagt ccgccgacga aggtgacaga gtggatcacg
     8341 aggcaggagg agccacgggc gcaatccacc ccatctccgg cccttccccc agacacaaag
     8401 gcctctgaca tagacaccag ctccagtacg ctgaggaaga tcctcatgga ccctaaatac
     8461 gtatctgcca cgggcgtcac ttccacgagt gtcacaactg ccattgcaga gcctgtcagt
     8521 gctgcccctt gcctgcatga ggcactaccc cctccggttg aatctaaaaa gcctctttta
     8581 gaagaaaaag cagcagctcc agtaactaac acctccgaca cacaggtctc agaggttcca
     8641 gtggccactg acaaagaaaa ggtgactcca gtcattgctc ccaaaattac ttctgttatt
     8701 agccggatgc ctgtcagcat tgatttggag aattcgcaaa agataactct ggcgaagcca
     8761 gctcctcaga ccctgactgg cctggtgagc gccctgaccg gcctggtgaa tgtctccttg
     8821 gttccagtga atgcactggc cggcccagtg aatgccctga aaggccctgt gaagggctca
     8881 gtggccacgc tgaaaggctt ggtgaacact cccgctggcc ctgtgaatgt cctaaaggga
     8941 ccagtgaatg ttctgacggg gcccgtgaat gttctcacgg ctccagtgaa cgccgccacg
     9001 ggcacagtga acactgccgc gggtgcggtg acagtttccg cgggtgcggt gactgctgca
     9061 tctggggttg tgactgccac gacaacaggt gcagtgactg tggcaggtgc agtgattgca
     9121 ccatccgcaa agtgccgaca gagatccggc actaatgaca acagtcggtt ccacccaggg
     9181 tctatgtctg tgattgatga ccgtccggca gacacgggct ctggcgctgg gctgcgtgtg
     9241 aacacttcag aaggggttgt gctgctgagc tattcggggc agaagactga aggcccacag
     9301 cggatcagtg ccaagattag ccagatcccc ccagcaagtg caatggacat tgagtttcaa
     9361 cagtcggtgt ccaagtccca ggtcaaaccc gattctgtca tgccatctca gcctccgccc
     9421 aaaggccctc aggctccttc aggctatgca aacgtggcca cccattctac tctggtacta
     9481 actgcccaga cctataacgc atctcctgtg atttcatcgg ttaaggccga ccgtccgtcc
     9541 ttggagaagc ctgagcccat tcatctctct gtgtccacac ccgtcaccca gggtggcaca
     9601 gtaaaggtcc tcacccaggg cataaacaca cccccggtgc tggttcacaa ccagctggtc
     9661 ctcaccccaa gcatagtcac cactaacaaa aagcttgctg accccgtcac cctcaaaata
     9721 gagactaagg tccttcagcc agcaaacctg gggtccactc ttacacccca ccaccctcct
     9781 gctctgccca gcaaactgcc tgcagaagtg aaccacgtca cctcggggcc cagcaccccg
     9841 acagatcgga ctgtctccca tttggcagcc accaagccag atgtgcattc ccctcgacct
     9901 agcgggccgg ctccgtcccc attcccgagg gcatgccacc ccagcagcac cacatccgcc
     9961 gcgctctcca ctaatgccac ggtcatgctg gctgcgggca ttcctgtgcc gcagttcatc
    10021 tctagcatcc acccagagca gtccgtcatc atgccacccc acagcatcac ccagaccgtg
    10081 tcgctcagcc acctgtcaca gggcgaggtg aggatgaaca cgcccacgtt gcccagcatc
    10141 acctacagca tccggccaga gacacttcac tctcctcggg cccccctgca gccccagcaa
    10201 atagaggtcc gggccccgca gccagccaca gctggtgtgc ccgccctggc ctcccagcac
    10261 cctccagagg aagaagtgca ttatcacctc cccgttgctc gagccgcagc ccctgtgcag
    10321 tcggaggtgc tggtcatgca gtctgagtac cgactacacc cgtacactgt gccccgggat
    10381 gtgaggatca tggtgcatcc tcacgtgacg gccgtcagcg agcagccccg ggcagcggac
    10441 ggggtggtga aagtgccacc agccagcaag gcccctcagc agccagggaa agaagccgcc
    10501 aagatggcag atgccaaagc cgcccccgcc cccgcccccg ccccccacgg tgaggcccgc
    10561 atcctcacag tcacacccag caaccagctg caggggctgc ctctgacccc gcctgtggtg
    10621 gtgacgcacg gggtgcagat tgtgcactcc agcggggagc tcttccagga gtacaggtac
    10681 ggggacgtcc gcacctacca cagcccggct cagctcgcgc acacgccgtt tcctgctgct
    10741 gcctccattg gcctgccttc ccggaccaag gctcctgctc agggcctccc tcccgaaggc
    10801 gagccctcgc agcctctgca gcccgcgcag tccgcacagc cggcccagtc cacgcagacc
    10861 tcccagctca gccagccagg ccagccacca agcagcaaga tgcctccagt ctcccaggag
    10921 gcaaagggca cccagacagg agtagagcag ccgcgcctcc caaacgtacc tggaaacagg
    10981 ccggcggagc ctcatgccca ggtccacagg gctcaggcgg aaacaagcca gacctcctat
    11041 ccttcccccg tgtctgtctc gatgaagcct gacctcccgg cccctcttcc tgctcaggct
    11101 gccccaaagc agccgttgtt tgtccctaca ccctcaggcc ccagcccccc tccaggactg
    11161 gctctgccgc atactgaaac ccagcccgcc cccaaacaag attcctctcc tcatttgact
    11221 tcccagagac ctgtggatat ggtccagctt ctgaagaagt accccatcgt gtggcagggc
    11281 ctcctggccc tcaagaacga cacagctgct gtgcagctcc acttcgtctc tggcaacaat
    11341 gtcctggccc atcggtccct gccgctctct gaaggagggc cccccctgag gattgcccag
    11401 aggatgcggc tggaggcctc acagctggag ggggttgccc gaaggatgac ggtggagaca
    11461 gattactgtc tgctgctggc tctgccctgt ggccgtgacc aagaggacgt cgtgagccag
    11521 accgagtccc tcaaggctgc cttcatcacg tatctgcagg ccaagcaggc ggcaggcatc
    11581 atcaacgttc ccaaccctgg ctccaatcag cctgcctacg tgctgcagat cttcccgccc
    11641 tgcgaattct ctgagagtca cctgtcccgt ctggcccccg acctcctggc cagcatctcc
    11701 cacatttctc cccacctcat gatcgtcatt gcctccgtgt gagccaccga atggtcacca
    11761 ctcggcgtat cttcctgagg ctctgcagca aaaaataaaa cacaggacaa cccagccaag
    11821 tggaggaaga agctgccggg gggggacaga ctccactgcc agacggccag cctcgctctc
    11881 ctacccgccc gcccgcccgg ctcagtcaga cagaccccgc ctgggcagtg gtgctgctac
    11941 tcgtatgttt acatgacatt tagcccaagg acagaccacc aaccaatgga cttgcagaca
    12001 ccttgaggct gggtttctct ctcctcctct tggagaaaag gaacagggca gtggaatttt
    12061 tttgtttttg tttttaagaa acaaaacaga actgcctttg cactaaatta gtgacttgga
    12121 cttttgcaca gtgaagacag gctgtgacac tctggatgtc ttggtgtacg tgaacacaca
    12181 tggcacacac atcgcagact ctcatgcagg acttcaaact tctgctgaaa ccttggggtc
    12241 aaggaacatt tcattgggct gtgttgtccc cacccctccc ttccccttgc tcatttggat
    12301 gtcatctctc tttaattctc ctgctgccac catctctgat tcacccagga tgtacagttt
    12361 acaatcagaa aagagcaaac agaaggattt tctctcttgg tggaatatgc agaacttggg
    12421 atgtgtgtat atataaatat ataatatata taaatatata taatactgac ttaaaaatca
    12481 aattccccga catacatttt ttttaatctg tgccaaaaat gtgttttcag agaaaatctt
    12541 attttcatac tcagactttg tattgtcact catttgtata agtgcgcttc gttacagcac
    12601 gggccctgct cccgcaactt ggaagtgtca cacacacaaa aagactgtac aaaagactgg
    12661 cttcccttct tcctgtgacc ttgacctctc cccccaactt cctaacactt attaatttat
    12721 gaaaactgtt tttctcagcg cagttttgtt ttgtgtgtcc attggattac aaactttatt
    12781 aaaaaataca gaaca
//
LOCUS       XM_032650847            2719 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 17
            (ZBTB17), transcript variant X1, mRNA.
ACCESSION   XM_032650847
VERSION     XM_032650847.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2719
                     /gene="ZBTB17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763264"
     CDS             240..2618
                     /gene="ZBTB17"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 17
                     isoform X1"
                     /protein_id="XP_032506738.1"
                     /db_xref="GeneID:116763264"
                     /translation="MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVDFKAHKAVLAA
                     CSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLSSENVDDVLAVASFLQMQ
                     DIITACHALKSLAEPAASPGESMEASALEVGDKRAKEEKTAATTLNELDLARSSPPAG
                     LGREPKEERGGQAESAASGAEQTEKADAPREPVELKPDPTSGMAAAEAEAALSESSEQ
                     EMEVEPARKGEEREEEGAVPAVVKEEGPPLEKGEAPEESEESASTDSGQELGAEARGL
                     RSGTYGDRTESKAYGSVIHKCEDCGKEFTHTGNFKRHIRIHTGEKPFSCRECSKAFSD
                     PAACKAHEKTHSPLKPYGCEECGKSYRLISLLNLHKKRHSGEARYRCEDCGKLFTTSG
                     NLKRHQLVHSGEKPYQCDYCGRSFSDPTSKMRHLETHDTDKEHKCPHCDKKFNQVGNL
                     KAHLKIHIADGPLKCRECGKQFTTSGNLKRHLRIHSGEKPYVCVHCQRQFADPGALQR
                     HVRIHTGEKPCQCVMCGKAFTQASSLIAHVRQHTGEKPYVCERCGKRFVQSSQLANHI
                     RHHDNIRPHKCSVCSKAFVNVGDLSKHIIIHTGEKPYLCDKCGRGFNRVDNLRSHVKT
                     VHQGKAGIKILEPEEGGEVSVVTVDDMVTLATEALAATAVTQLTVVPVGAAVTADETE
                     VLKAEISKAVKQVQEEDPNTHILYACDSCGDKFLDANSLAQHVRIHTAQALVMFQTDA
                     DFYQQYGPGSTWPAGQVLQTGELVFRPRDGADGQPALAETPPTAPECPPSAE"
     misc_feature    243..578
                     /gene="ZBTB17"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 17 (ZBTB17); Region:
                     BTB_POZ_ZBTB17_MIZ1; cd18206"
                     /db_xref="CDD:349515"
     misc_feature    order(246..251,255..272,276..281,288..290,303..308,
                     351..353,357..359,366..374,387..389,465..470,477..488,
                     546..548)
                     /gene="ZBTB17"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349515"
     misc_feature    order(300..302,309..335,339..341,345..347,354..356,
                     414..419,423..428,432..434)
                     /gene="ZBTB17"
                     /note="putative tetramer (dimer of dimer) interface
                     [polypeptide binding]; other site"
                     /db_xref="CDD:349515"
     misc_feature    1122..2117
                     /gene="ZBTB17"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1128..1190
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1212..1274
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1296..1358
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1311..1313,1317..1319,1323..1325,1329..1334,
                     1341..1346,1353..1355,1395..1397,1401..1403,1413..1418,
                     1425..1430,1437..1439,1479..1481,1485..1487,1491..1493,
                     1497..1502,1509..1514,1521..1523)
                     /gene="ZBTB17"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1380..1442
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1464..1526
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1548..1610
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1632..1694
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1647..1649,1653..1655,1659..1661,1665..1670,
                     1677..1682,1689..1691,1731..1733,1737..1739,1749..1754,
                     1761..1766,1773..1775,1815..1817,1821..1823,1827..1829,
                     1833..1838,1845..1850,1857..1859)
                     /gene="ZBTB17"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1716..1778
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1800..1862
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1884..1946
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1968..2030
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2052..2111
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275370"
     misc_feature    2361..2423
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 atgcgccgga agttgcagac gggaagccag cgaggtcggt tccgcccgac tccaacatgg
       61 cggcgccctt tgtctgctct gaagtgctgt ccccggcctc ctcgctgccg tgatgtacct
      121 ccctctgcgg tggggtccag gacatggcag gtaatgagct ggaggaggag cgccaagctg
      181 gagttgcccc agacaaactg tcagaacaga gtagcctggg ctacttggaa atctgagcca
      241 tggattttcc ccagcacagc cagcatgtct tggagcagct gaaccagcag cggcaactgg
      301 ggcttttgtg tgactgcact tttgtggtgg atggtgttga ctttaaggct cataaagcag
      361 tgctggcggc ctgcagcgag tacttcaaga tgctcttcgt ggaccagaag gatgtggtgc
      421 acctggacat cagtaacgcg gcaggcctgg ggcaggtgct ggagtttatg tacacggcca
      481 agctgagcct gagctctgag aacgtggacg atgtgctggc tgtggccagc ttcctgcaga
      541 tgcaggacat catcacggcc tgccatgccc tcaagtcact ggctgagccg gctgccagcc
      601 ctggggagag tatggaggcc tcggccttgg aagtggggga caagagagcc aaagaagaga
      661 agacggctgc cactacactg aacgagctgg acctggccag aagcagtcca cccgcggggc
      721 tgggcaggga gcccaaagag gagcgaggcg gccaggccga gagcgcggcc agcggtgcag
      781 agcagacgga gaaggccgat gccccccggg agcctgtgga gctcaagccg gaccccacga
      841 gcggcatggc tgctgctgag gccgaggccg ccttgtcaga gagctcagag caagaaatgg
      901 aggtggagcc agccaggaag ggagaagaac gagaggagga gggcgccgtg cccgcggtgg
      961 tcaaggagga ggggccgccg ctggaaaagg gcgaggcccc cgaggagagc gaggagtcgg
     1021 ccagcacgga ctcgggccag gagctcggcg cggaggcgcg gggcctgcgc tcgggcacct
     1081 acggcgaccg cacggagtcc aaggcctacg gctccgtcat ccacaagtgc gaggactgtg
     1141 ggaaggagtt cacgcacacg ggcaacttca agcgacacat ccgcatccac acgggcgaga
     1201 agcccttctc gtgccgggag tgtagcaagg ccttctctga cccggccgcc tgcaaggccc
     1261 acgagaagac ccacagcccg ctgaagccgt acggctgcga ggagtgcggc aagagctacc
     1321 ggctcatcag cctgctgaac ctgcacaaga agcggcactc gggcgaggcg cgctaccgct
     1381 gcgaggactg cggcaagctc ttcaccacgt cgggcaacct caagcggcac cagctggtgc
     1441 acagcggcga gaagccctac cagtgcgact actgcggccg ctcgttctcc gaccccacgt
     1501 ccaagatgcg ccatctggag acgcacgaca ccgacaagga gcacaagtgc cctcactgcg
     1561 acaagaagtt caaccaggtg gggaacctga aggcccacct gaagatccac atcgccgacg
     1621 ggcccctcaa gtgccgggag tgtgggaagc agttcaccac ctcagggaac ctgaagcggc
     1681 accttcggat tcacagtggt gagaagccct acgtgtgcgt ccactgccag cggcagttcg
     1741 ctgaccccgg cgccctgcag cggcacgtcc gcatccacac gggtgagaag ccatgccagt
     1801 gcgtgatgtg cggcaaagcc ttcacccagg ccagctccct catcgcccac gtgcgccagc
     1861 acaccgggga gaagccttac gtctgcgagc gttgcggaaa gagatttgtc cagtctagcc
     1921 agctggccaa tcacatccgc caccatgaca acatccgtcc tcacaagtgc agcgtgtgca
     1981 gtaaggcctt cgtgaacgtg ggggacctgt ccaagcatat cattatccac actggagaga
     2041 agccttacct gtgtgacaag tgcggtcgcg gcttcaaccg ggtggacaac cttcgttccc
     2101 atgtgaagac tgtgcaccag ggcaaggcag gcatcaaaat cctggagccg gaggagggcg
     2161 gtgaggtcag cgtggtcacc gtcgatgaca tggtcacgct ggccactgag gcactggcgg
     2221 caacggccgt cactcagctc acagtggtgc cagtgggggc ggcggtgacc gcagatgaga
     2281 cagaagtact taaagccgag atcagcaaag ctgtgaagca agtgcaggaa gaagatccca
     2341 acactcacat cctctacgct tgtgactcct gtggagataa gttcctggat gccaacagcc
     2401 tggcccagca cgtgcggatc cacacggccc aggcactggt catgttccag acggatgcgg
     2461 acttctacca gcagtacggg ccaggcagca cgtggccggc cgggcaggtg ctgcagactg
     2521 gggagctagt cttccgccct cgggatgggg ctgatgggca gccggccctg gcagagacac
     2581 ctcccacagc ccctgaatgt ccaccgtctg ctgagtgagc aggcaccccc tcctcctgtt
     2641 tatttaaggt tggacggcac cctagaactg agaggggtga gcccattccc tagagagaat
     2701 aaatctgatt attttctaa
//
LOCUS       XM_032650851            2512 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 17
            (ZBTB17), transcript variant X2, mRNA.
ACCESSION   XM_032650851
VERSION     XM_032650851.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2512
                     /gene="ZBTB17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763264"
     CDS             261..2411
                     /gene="ZBTB17"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 17
                     isoform X2"
                     /protein_id="XP_032506742.1"
                     /db_xref="GeneID:116763264"
                     /translation="MYTAKLSLSSENVDDVLAVASFLQMQDIITACHALKSLAEPAAS
                     PGESMEASALEVGDKRAKEEKTAATTLNELDLARSSPPAGLGREPKEERGGQAESAAS
                     GAEQTEKADAPREPVELKPDPTSGMAAAEAEAALSESSEQEMEVEPARKGEEREEEGA
                     VPAVVKEEGPPLEKGEAPEESEESASTDSGQELGAEARGLRSGTYGDRTESKAYGSVI
                     HKCEDCGKEFTHTGNFKRHIRIHTGEKPFSCRECSKAFSDPAACKAHEKTHSPLKPYG
                     CEECGKSYRLISLLNLHKKRHSGEARYRCEDCGKLFTTSGNLKRHQLVHSGEKPYQCD
                     YCGRSFSDPTSKMRHLETHDTDKEHKCPHCDKKFNQVGNLKAHLKIHIADGPLKCREC
                     GKQFTTSGNLKRHLRIHSGEKPYVCVHCQRQFADPGALQRHVRIHTGEKPCQCVMCGK
                     AFTQASSLIAHVRQHTGEKPYVCERCGKRFVQSSQLANHIRHHDNIRPHKCSVCSKAF
                     VNVGDLSKHIIIHTGEKPYLCDKCGRGFNRVDNLRSHVKTVHQGKAGIKILEPEEGGE
                     VSVVTVDDMVTLATEALAATAVTQLTVVPVGAAVTADETEVLKAEISKAVKQVQEEDP
                     NTHILYACDSCGDKFLDANSLAQHVRIHTAQALVMFQTDADFYQQYGPGSTWPAGQVL
                     QTGELVFRPRDGADGQPALAETPPTAPECPPSAE"
     misc_feature    <261..371
                     /gene="ZBTB17"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; Region:
                     BTB_POZ; cl38908"
                     /db_xref="CDD:453885"
     misc_feature    915..1910
                     /gene="ZBTB17"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    921..983
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1005..1067
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1089..1151
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1104..1106,1110..1112,1116..1118,1122..1127,
                     1134..1139,1146..1148,1188..1190,1194..1196,1206..1211,
                     1218..1223,1230..1232,1272..1274,1278..1280,1284..1286,
                     1290..1295,1302..1307,1314..1316)
                     /gene="ZBTB17"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1173..1235
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1257..1319
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1341..1403
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1425..1487
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1440..1442,1446..1448,1452..1454,1458..1463,
                     1470..1475,1482..1484,1524..1526,1530..1532,1542..1547,
                     1554..1559,1566..1568,1608..1610,1614..1616,1620..1622,
                     1626..1631,1638..1643,1650..1652)
                     /gene="ZBTB17"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1509..1571
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1593..1655
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1677..1739
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1761..1823
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1845..1904
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275370"
     misc_feature    2154..2216
                     /gene="ZBTB17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 atgcgccgga agttgcagac gggaagccag cgaggtcggt tccgcccgac tccaacatgg
       61 cggcgccctt tgtctgctct gaagtgctgt ccccggcctc ctcgctgccg tgatgtacct
      121 ccctctgcgg tggggtccag gacatggcag gtaatgagct ggaggaggag cgccaagctg
      181 gagttgcccc agacaaactg tcagaacaga gtagcctggg ctacttggaa atctgaggcc
      241 tggggcaggt gctggagttt atgtacacgg ccaagctgag cctgagctct gagaacgtgg
      301 acgatgtgct ggctgtggcc agcttcctgc agatgcagga catcatcacg gcctgccatg
      361 ccctcaagtc actggctgag ccggctgcca gccctgggga gagtatggag gcctcggcct
      421 tggaagtggg ggacaagaga gccaaagaag agaagacggc tgccactaca ctgaacgagc
      481 tggacctggc cagaagcagt ccacccgcgg ggctgggcag ggagcccaaa gaggagcgag
      541 gcggccaggc cgagagcgcg gccagcggtg cagagcagac ggagaaggcc gatgcccccc
      601 gggagcctgt ggagctcaag ccggacccca cgagcggcat ggctgctgct gaggccgagg
      661 ccgccttgtc agagagctca gagcaagaaa tggaggtgga gccagccagg aagggagaag
      721 aacgagagga ggagggcgcc gtgcccgcgg tggtcaagga ggaggggccg ccgctggaaa
      781 agggcgaggc ccccgaggag agcgaggagt cggccagcac ggactcgggc caggagctcg
      841 gcgcggaggc gcggggcctg cgctcgggca cctacggcga ccgcacggag tccaaggcct
      901 acggctccgt catccacaag tgcgaggact gtgggaagga gttcacgcac acgggcaact
      961 tcaagcgaca catccgcatc cacacgggcg agaagccctt ctcgtgccgg gagtgtagca
     1021 aggccttctc tgacccggcc gcctgcaagg cccacgagaa gacccacagc ccgctgaagc
     1081 cgtacggctg cgaggagtgc ggcaagagct accggctcat cagcctgctg aacctgcaca
     1141 agaagcggca ctcgggcgag gcgcgctacc gctgcgagga ctgcggcaag ctcttcacca
     1201 cgtcgggcaa cctcaagcgg caccagctgg tgcacagcgg cgagaagccc taccagtgcg
     1261 actactgcgg ccgctcgttc tccgacccca cgtccaagat gcgccatctg gagacgcacg
     1321 acaccgacaa ggagcacaag tgccctcact gcgacaagaa gttcaaccag gtggggaacc
     1381 tgaaggccca cctgaagatc cacatcgccg acgggcccct caagtgccgg gagtgtggga
     1441 agcagttcac cacctcaggg aacctgaagc ggcaccttcg gattcacagt ggtgagaagc
     1501 cctacgtgtg cgtccactgc cagcggcagt tcgctgaccc cggcgccctg cagcggcacg
     1561 tccgcatcca cacgggtgag aagccatgcc agtgcgtgat gtgcggcaaa gccttcaccc
     1621 aggccagctc cctcatcgcc cacgtgcgcc agcacaccgg ggagaagcct tacgtctgcg
     1681 agcgttgcgg aaagagattt gtccagtcta gccagctggc caatcacatc cgccaccatg
     1741 acaacatccg tcctcacaag tgcagcgtgt gcagtaaggc cttcgtgaac gtgggggacc
     1801 tgtccaagca tatcattatc cacactggag agaagcctta cctgtgtgac aagtgcggtc
     1861 gcggcttcaa ccgggtggac aaccttcgtt cccatgtgaa gactgtgcac cagggcaagg
     1921 caggcatcaa aatcctggag ccggaggagg gcggtgaggt cagcgtggtc accgtcgatg
     1981 acatggtcac gctggccact gaggcactgg cggcaacggc cgtcactcag ctcacagtgg
     2041 tgccagtggg ggcggcggtg accgcagatg agacagaagt acttaaagcc gagatcagca
     2101 aagctgtgaa gcaagtgcag gaagaagatc ccaacactca catcctctac gcttgtgact
     2161 cctgtggaga taagttcctg gatgccaaca gcctggccca gcacgtgcgg atccacacgg
     2221 cccaggcact ggtcatgttc cagacggatg cggacttcta ccagcagtac gggccaggca
     2281 gcacgtggcc ggccgggcag gtgctgcaga ctggggagct agtcttccgc cctcgggatg
     2341 gggctgatgg gcagccggcc ctggcagaga cacctcccac agcccctgaa tgtccaccgt
     2401 ctgctgagtg agcaggcacc ccctcctcct gtttatttaa ggttggacgg caccctagaa
     2461 ctgagagggg tgagcccatt ccctagagag aataaatctg attattttct aa
//
LOCUS       XM_032650858             912 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763279
            (LOC116763279), mRNA.
ACCESSION   XM_032650858
VERSION     XM_032650858.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..912
                     /gene="LOC116763279"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116763279"
     CDS             30..872
                     /gene="LOC116763279"
                     /codon_start=1
                     /product="uncharacterized protein LOC116763279"
                     /protein_id="XP_032506749.1"
                     /db_xref="GeneID:116763279"
                     /translation="MPGKGCSTQRPVGRDLLVGEARLSLCRMGLEPRDPSRSKLVALP
                     ELGCGQHTRARETAAPRAPSGLLVGGFSSARREDRTSPLHLPPLWSHGCDPAPLCWEL
                     GPQGLATTAYQDPGHPYRAQLGGPFSQNSKLVPSTCNSSLRDGTISHRKHSSVWRSPR
                     DTASESSNSVVLVFPSPTPNSPACGGSSCWGSSAHQCHPPTGRQLLQGQPAPHPEEEG
                     TRGKTPRLPFLKMFLSLSERWLYSLINQSSNLKCLRHYAGASWDLEVSDEHHSTEKQF
                     KFSL"
ORIGIN      
        1 ctggggcggg gagctggcag ctgtggctga tgccagggaa gggttgctcc acccagcgac
       61 cagtcggcag agacctgctt gtgggggaag ccaggctgtc cctttgcaga atgggactgg
      121 agccccggga cccgtctaga agcaagctgg ttgctttgcc tgagttgggg tgtgggcagc
      181 acactcgggc cagagaaact gcggctccac gagccccatc tggcctcctc gttggaggct
      241 tctcgtcggc tcggcgtgag gatcggacct cccctctcca cctccctcca ctgtggagcc
      301 acggctgtga ccctgcgccc ttgtgttggg agctgggccc acagggcttg gccacaactg
      361 cttaccagga tccaggccac ccgtacagag cccagctcgg gggcccattc agccagaaca
      421 gcaagcttgt ccccagcacc tgtaattcct cactcagaga tggtaccatc tcgcaccgaa
      481 agcatagctc tgtttggagg agccccaggg atactgcaag tgagagcagc aactctgtgg
      541 tccttgtgtt cccgtccccc acgcccaact ccccagcttg tggtgggtcc agctgctggg
      601 gaagctcggc ccaccagtgc catcctccta ctgggaggca gctgctgcag ggccagcctg
      661 caccacaccc ggaggaggaa gggacaagag gcaagacccc aaggcttcct ttccttaaga
      721 tgtttctgag tttgagtgag aggtggcttt attctttaat caatcaatca tcaaatttga
      781 agtgccttcg acattacgca ggagccagtt gggaccttga agtgtcagat gaacaccaca
      841 gcactgaaaa acagttcaag ttcagtctgt gatgaaaatc ttcttttgta caaggtaaaa
      901 tgatccttgg gg
//
LOCUS       XR_004352481            1269 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763291
            (LOC116763291), ncRNA.
ACCESSION   XR_004352481
VERSION     XR_004352481.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1269
                     /gene="LOC116763291"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116763291"
     ncRNA           1..1269
                     /ncRNA_class="lncRNA"
                     /gene="LOC116763291"
                     /product="uncharacterized LOC116763291"
                     /db_xref="GeneID:116763291"
ORIGIN      
        1 tgaaaagaaa gcatcatagg ttttagactg aaacaaatca gggctaacca gtggctgaaa
       61 accaacaaat ggaagacaca agagagctgg aggaagcccc ttggcagtag atggctgggt
      121 ccccgagtca ccacctgaag aaggacaacc caggagtgtg tctaaccagg aaaccccact
      181 ttggactcgc cattgagatc tggctaagct gacccaccag tgtcccccag gatcaaggag
      241 gcagaactcg gaaggacatg aaggttgctt ttgacaccct cacggttgta ctattttcac
      301 tcttctgaat tcttatggct tctgttctca gacctaccca ggggcttctg gctctctcgt
      361 ggctccctga accctctgct gtgacagtaa gcttaggtcc accttaatta aaaaaaaaaa
      421 aagtagcaat aatgacaatc acagcgactg acattggctc tttctcatgt gcctgatgtt
      481 acgctaagaa tcacattcac attatcctcc atgactttcc tcagcagctg tatgaagtgg
      541 ctctgtgtgt gacagacacc tttggtgccc atctccatct ccttgctcca ccccaggaag
      601 cctcctgtgg gcagtctggt ctcctgcgtg atggcggtgt ctctctgcct gacatgtgct
      661 ctggcctcat gggaagatcc tcagcctagt tgggggctaa gcgggaagta cccatgaatc
      721 cttggcccag gaacaaccct caaccttgga agaatgggaa ttcctgtata aatcccccca
      781 gcttcctttc cctttgctgg gacaattctg aagcaagttc ccacagtgtc ccaaagggtc
      841 ctcacagggg ttgaaagcag tgaccacagt gggaacccct cactgaagcc acttggactg
      901 attttccccc cctcccatct cacttctcca gtggtcccag ggattaccac ccaaacttgc
      961 tccccattct tgactcaaga tttgcccttg ggggaatcca aactgagatc acacatgatt
     1021 gttcttacgt aacacaggag aagtggaggc ttagcgaggc tgaactgcct gctgttgtat
     1081 agctggtgga tggccaggca agactcgaac caggattatt attattctct ccctgcctta
     1141 ttctacttcc atcagaaata gtctggacca atttttctag ttaaataatt gaattaattt
     1201 atatatagct tctttgcaaa aaggacttga gtttgcagag cataactgat aactccttcc
     1261 ttccatcaa
//
LOCUS       XM_032650867            3499 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X1, mRNA.
ACCESSION   XM_032650867
VERSION     XM_032650867.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3499
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             507..3413
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X1"
                     /protein_id="XP_032506758.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGLVCWWGHCLPGGEGKPGRVVDIRGWDVETGRSVASVTWADGT
                     TNVYRVGHKGKVDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKC
                     LLDADILRDMQEGHGGWNPRMAKCIGQMGTVHRITDRGDVRVQFNHKTRWTFHPGALS
                     KHNSCSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKVFGDGNLGVLVN
                     GKLWTFSPSCLVAYRPEEDANLDVAERARENKSSLSVVLDKLRAQKSDLEHPGRLVVE
                     VALGNVARALDLLRRHPEQVDTKNHGRTALQVAAYLGQVELVRLLLQARAGVDLPDDE
                     GSTALHYAALGNQPEAARVLLSWGCGANTLNGTQSSALHVAVQRGFLEVVRVLCECGC
                     DVNLPDAHADTPLHCAISAGTGASGIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHT
                     LAVRRILARARQLVDAKKEDGFTALHLAALNDHREVAQVLIREGHCDVNVRNRKLQSP
                     LHLAVQQAHVGLVPLLVDAGCSANAEDEEGDTALHVALQRHQLLPLATDGAGGDPGAL
                     QLLSRLQASGLPGSMELTVGAAVACFLALEGADLSYANHRGRSPLDLAAEGRLLKALQ
                     GCAQRFRERQAGGGGGAAQGPRLALSAPNTVTNLHVAAPSGPEAAECLVCSELALLVL
                     FSPCQHRMVCEECARRMKKCIRCQAVIVKKLRPDGTEVVSAAPAPGPPRQLVEELQSR
                     YRQMEERITCPICIDSHIRLVFQCGHGACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    540..740
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    771..905
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(777..779,786..788,822..824,831..833,849..851,
                     858..860,876..878,888..890)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(777..779,786..788,849..851,858..860)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(780..782,813..815,819..821,837..839,843..845)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(816..818,861..863,894..896,903..905)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(822..824,831..833,876..878,888..890)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    984..1211
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1308..1505
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1524..1715
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1881..2684
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1929..1931,1935..1937,1947..1952,1959..1967,
                     1971..1976,1986..1988,1995..1997,2022..2024,2028..2030,
                     2034..2036,2046..2051,2058..2066,2070..2075,2085..2087,
                     2094..2096,2121..2123,2127..2129,2133..2135,2145..2150,
                     2157..2165,2169..2174,2184..2186,2193..2195,2220..2222)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1929..2024
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2028..2123
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2127..2222
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2226..2330
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2337..2432
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2340..2342,2352..2357,2364..2372,2376..2381,
                     2391..2393,2400..2402,2430..2432,2436..2438,2442..2444,
                     2454..2459,2466..2474,2478..2483,2493..2495,2502..2504,
                     2532..2534,2538..2540,2544..2546,2556..2561,2568..2576,
                     2580..2585,2595..2597,2604..2606,2631..2633)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2436..2534
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2517..2867
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2538..2633
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3033..3146
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3258..3410
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3276..3278,3285..3287,3318..3320,3324..3326,
                     3333..3335,3342..3344,3363..3365,3372..3374)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 tagcgggctg cggactacaa gtcccggcag gcctcgcggc ggccccagag ccccgagcgc
       61 cgggggcttc gggcggcctt ggccggtggg ctctggtgct gcgcggcgaa gcggggcggc
      121 ctggctggtt ggctgactct gagcagccta gctcgctggc cggccgccgc acacactgag
      181 gccgcagtcg gccggctgac agactcggct ctcttcaggc ccccggagcc cccacgcgaa
      241 gcaggcggga cgcaaacttc ggggcaagtg gaggggtaga caagggcacc agggccgggg
      301 actggcagcg gcgggggccc ggggcggctt cccgaggaag acttgctggc tggctacctg
      361 tttggttcgc tgtgttctgc gtcggcaatc gcttctagtt tccaacagga aatcctggtg
      421 tctgagcaaa cctgtgaccc acgaaagagc agctaagcat ccgggatgct gacgagaggc
      481 tggtgtgtgc tgtaaggtct cccaccatgg agccagaccc ccaggcgggc gtgcaggtgg
      541 gcatgcgcgt ggtacgcggc gtggactgga agtggggcca gcaggacggc ggcgagggcg
      601 gcgtgggcac ggtggtggag ctcggccgcc acggcagccc ttcgaccccc gaccgcacgg
      661 tggtcgtgca gtgggaccac ggcacgcgca ccaactaccg cgcgggctac cagggcgcgc
      721 atgacctgct gctctacgac aacgcccaga tcggcgtccg ccaccccaac attatctgcg
      781 actgctgcaa gaagcacggg ctgcggggca tgcgctggaa gtgccgcgtc tgcttcgact
      841 acgatctctg cacgcagtgc tacatgcaca acaggcacga cgtggcccac gccttcgagc
      901 gctacgagac ggcccactcg cgcccggtca cgctgagtcc ccgccagggc ctcccaagga
      961 tcccgttaag gggcatcttc cagggagcga aggtggttcg gggccccgac tgggagtggg
     1021 gttcgcagga tggcttagtc tgctggtggg gccactgtct cccaggaggg gaagggaagc
     1081 caggccgagt ggtggacatc cgtggctggg atgtggagac gggccggagc gtggccagcg
     1141 tgacatgggc cgacggcacc accaacgtgt accgcgtggg ccacaagggc aaggtggacc
     1201 tcaagtgtgt gggcgaggca gctggcggct tctactacag ggagcatctc ccgaggctcg
     1261 gcaagcccgc agagctgcgg cgcagggtga gcgccgacag ccagcccttc cagcacgggg
     1321 acaaggtcaa gtgtctgctg gacgcggaca tcctgaggga catgcaggaa ggccacggcg
     1381 gatggaaccc ccggatggcc aagtgcatcg gacagatggg caccgtacac cgcatcacgg
     1441 accgtgggga cgtgcgtgtg cagttcaacc acaagacccg ctggaccttc cacccggggg
     1501 ctctcagcaa gcacaactcc tgctcggtgg gggaagtcgt gcgggtcatc gacgacctcg
     1561 acatggtgaa gcggctgcag gccgggcacg gcgagtggac agatgacatg gcccccgctc
     1621 tgggccacgt cgggagagtg ctcaaggttt tcggagatgg gaacttgggt gtgctggtca
     1681 atggtaagct gtggaccttc agcccctcct gcctggtggc ctaccggcct gaggaggacg
     1741 ccaacctgga cgtggccgag cgcgcccggg agaacaaaag ctccctgagt gtcgtcctgg
     1801 acaagcttcg agcccagaag agtgatctgg agcacccggg gaggctggtg gtggaggtgg
     1861 ccctgggcaa cgtggcccgg gctctggacc tgctgcggcg gcacccggag caggtggaca
     1921 ccaagaacca tggcaggacc gccctgcagg tggctgccta tctaggccag gtggagctgg
     1981 tgcggctgct gctgcaggct cgggcgggcg tggacctgcc ggacgacgag ggcagcacgg
     2041 cactgcacta cgcggcgctg gggaaccagc cagaggccgc ccgggtgctc ctgagctggg
     2101 gttgcggggc caacactctt aacggcaccc agagctcggc gctgcacgtg gccgtgcaga
     2161 ggggcttcct ggaggtggtg agggtcctct gtgagtgcgg ctgtgacgtc aacctgcccg
     2221 acgcccatgc tgacacgccc ctgcactgcg ccatctcggc gggcactggc gccagcggca
     2281 tcgtggaggt cctcaccgag gtgccgggta tcgacgtcac tgccacgaac agccaaggct
     2341 tcaccctgct gcaccacgca tccctcaaag gccacacact agcagtcaga aggattctgg
     2401 cgcgggcccg gcagctggtg gacgccaaga aggaggatgg gttcacagcg ctgcacctgg
     2461 ccgccctgaa cgaccacagg gaggtggccc aggttctcat ccgagagggc cattgtgacg
     2521 tgaacgttcg caaccggaag ctccagtccc cgctgcacct ggctgtgcag caggcccacg
     2581 tggggctggt gccgctgctg gtggacgctg gctgcagcgc caatgccgag gacgaggagg
     2641 gggacacggc tctgcatgtg gcactgcagc ggcaccagct gctgcccctg gcgactgatg
     2701 gggccggggg ggacccaggg gccttgcagc tgctgtcaag gctacaggcc tcgggccttc
     2761 cgggcagcat ggagctgacg gtgggcgcgg cggtcgcctg cttcttggcg ctggagggcg
     2821 ccgacctgag ctatgccaac caccgcggcc ggagcccgct ggacctggca gctgagggcc
     2881 gcctgctcaa agccctgcag ggctgtgccc agcgcttccg ggagcggcag gctggcggcg
     2941 gcgggggcgc ggcccagggc ccaaggctgg cgctcagtgc ccccaacact gttaccaacc
     3001 tgcacgtcgc tgcgccgtcc gggcccgagg ccgccgagtg cctggtgtgt tcggagctgg
     3061 cgctgttggt gctgttctcg ccttgccagc accgcatggt gtgtgaggag tgcgcccgca
     3121 ggatgaagaa gtgcatcagg tgccaggcgg tcatcgtcaa gaagctgcgc ccagacggca
     3181 cggaggtggt cagcgccgcc cccgcccccg gcccaccgcg gcagctggtg gaggagctgc
     3241 agagccgcta ccggcagatg gaggagcgca tcacctgccc catctgcatc gacagccaca
     3301 tccgcctcgt gttccagtgc ggtcacggcg cctgcgcgcc ctgcggcgct gcgctcagcg
     3361 cctgccccat ctgccgccag cccatccgcg accgcatcca gatcttcgtg tagcccgcgc
     3421 cccctgcctc gtccggggcc acgccccgcg accgccttcg caggctccta ctctgtattt
     3481 tataaaaaga ttaatggac
//
LOCUS       XM_032650873            3316 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X2, mRNA.
ACCESSION   XM_032650873
VERSION     XM_032650873.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3316
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             324..3230
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X1"
                     /protein_id="XP_032506764.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGLVCWWGHCLPGGEGKPGRVVDIRGWDVETGRSVASVTWADGT
                     TNVYRVGHKGKVDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKC
                     LLDADILRDMQEGHGGWNPRMAKCIGQMGTVHRITDRGDVRVQFNHKTRWTFHPGALS
                     KHNSCSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKVFGDGNLGVLVN
                     GKLWTFSPSCLVAYRPEEDANLDVAERARENKSSLSVVLDKLRAQKSDLEHPGRLVVE
                     VALGNVARALDLLRRHPEQVDTKNHGRTALQVAAYLGQVELVRLLLQARAGVDLPDDE
                     GSTALHYAALGNQPEAARVLLSWGCGANTLNGTQSSALHVAVQRGFLEVVRVLCECGC
                     DVNLPDAHADTPLHCAISAGTGASGIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHT
                     LAVRRILARARQLVDAKKEDGFTALHLAALNDHREVAQVLIREGHCDVNVRNRKLQSP
                     LHLAVQQAHVGLVPLLVDAGCSANAEDEEGDTALHVALQRHQLLPLATDGAGGDPGAL
                     QLLSRLQASGLPGSMELTVGAAVACFLALEGADLSYANHRGRSPLDLAAEGRLLKALQ
                     GCAQRFRERQAGGGGGAAQGPRLALSAPNTVTNLHVAAPSGPEAAECLVCSELALLVL
                     FSPCQHRMVCEECARRMKKCIRCQAVIVKKLRPDGTEVVSAAPAPGPPRQLVEELQSR
                     YRQMEERITCPICIDSHIRLVFQCGHGACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    357..557
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    588..722
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(594..596,603..605,639..641,648..650,666..668,
                     675..677,693..695,705..707)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(594..596,603..605,666..668,675..677)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(597..599,630..632,636..638,654..656,660..662)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(633..635,678..680,711..713,720..722)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(639..641,648..650,693..695,705..707)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    801..1028
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1125..1322
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1341..1532
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1698..2501
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1746..1748,1752..1754,1764..1769,1776..1784,
                     1788..1793,1803..1805,1812..1814,1839..1841,1845..1847,
                     1851..1853,1863..1868,1875..1883,1887..1892,1902..1904,
                     1911..1913,1938..1940,1944..1946,1950..1952,1962..1967,
                     1974..1982,1986..1991,2001..2003,2010..2012,2037..2039)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1746..1841
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1845..1940
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1944..2039
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2043..2147
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2154..2249
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2157..2159,2169..2174,2181..2189,2193..2198,
                     2208..2210,2217..2219,2247..2249,2253..2255,2259..2261,
                     2271..2276,2283..2291,2295..2300,2310..2312,2319..2321,
                     2349..2351,2355..2357,2361..2363,2373..2378,2385..2393,
                     2397..2402,2412..2414,2421..2423,2448..2450)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2253..2351
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2334..2684
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2355..2450
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2850..2963
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3075..3227
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3093..3095,3102..3104,3135..3137,3141..3143,
                     3150..3152,3159..3161,3180..3182,3189..3191)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 tgtgcgtctt ggcatctccc cgccgccgca gggtcggatg gcacagggct tgcgctgaag
       61 ctcagcaagg ctcgaggcca gtccgcaagt ctccagacat cagggctgca gcctaccagt
      121 ctctgggcgg gcggggggcg tcggaacagc tagacagact tgctggctgg ctacctgttt
      181 ggttcgctgt gttctgcgtc ggcaatcgct tctagtttcc aacaggaaat cctggtgtct
      241 gagcaaacct gtgacccacg aaagagcagc taagcatccg ggatgctgac gagaggctgg
      301 tgtgtgctgt aaggtctccc accatggagc cagaccccca ggcgggcgtg caggtgggca
      361 tgcgcgtggt acgcggcgtg gactggaagt ggggccagca ggacggcggc gagggcggcg
      421 tgggcacggt ggtggagctc ggccgccacg gcagcccttc gacccccgac cgcacggtgg
      481 tcgtgcagtg ggaccacggc acgcgcacca actaccgcgc gggctaccag ggcgcgcatg
      541 acctgctgct ctacgacaac gcccagatcg gcgtccgcca ccccaacatt atctgcgact
      601 gctgcaagaa gcacgggctg cggggcatgc gctggaagtg ccgcgtctgc ttcgactacg
      661 atctctgcac gcagtgctac atgcacaaca ggcacgacgt ggcccacgcc ttcgagcgct
      721 acgagacggc ccactcgcgc ccggtcacgc tgagtccccg ccagggcctc ccaaggatcc
      781 cgttaagggg catcttccag ggagcgaagg tggttcgggg ccccgactgg gagtggggtt
      841 cgcaggatgg cttagtctgc tggtggggcc actgtctccc aggaggggaa gggaagccag
      901 gccgagtggt ggacatccgt ggctgggatg tggagacggg ccggagcgtg gccagcgtga
      961 catgggccga cggcaccacc aacgtgtacc gcgtgggcca caagggcaag gtggacctca
     1021 agtgtgtggg cgaggcagct ggcggcttct actacaggga gcatctcccg aggctcggca
     1081 agcccgcaga gctgcggcgc agggtgagcg ccgacagcca gcccttccag cacggggaca
     1141 aggtcaagtg tctgctggac gcggacatcc tgagggacat gcaggaaggc cacggcggat
     1201 ggaacccccg gatggccaag tgcatcggac agatgggcac cgtacaccgc atcacggacc
     1261 gtggggacgt gcgtgtgcag ttcaaccaca agacccgctg gaccttccac ccgggggctc
     1321 tcagcaagca caactcctgc tcggtggggg aagtcgtgcg ggtcatcgac gacctcgaca
     1381 tggtgaagcg gctgcaggcc gggcacggcg agtggacaga tgacatggcc cccgctctgg
     1441 gccacgtcgg gagagtgctc aaggttttcg gagatgggaa cttgggtgtg ctggtcaatg
     1501 gtaagctgtg gaccttcagc ccctcctgcc tggtggccta ccggcctgag gaggacgcca
     1561 acctggacgt ggccgagcgc gcccgggaga acaaaagctc cctgagtgtc gtcctggaca
     1621 agcttcgagc ccagaagagt gatctggagc acccggggag gctggtggtg gaggtggccc
     1681 tgggcaacgt ggcccgggct ctggacctgc tgcggcggca cccggagcag gtggacacca
     1741 agaaccatgg caggaccgcc ctgcaggtgg ctgcctatct aggccaggtg gagctggtgc
     1801 ggctgctgct gcaggctcgg gcgggcgtgg acctgccgga cgacgagggc agcacggcac
     1861 tgcactacgc ggcgctgggg aaccagccag aggccgcccg ggtgctcctg agctggggtt
     1921 gcggggccaa cactcttaac ggcacccaga gctcggcgct gcacgtggcc gtgcagaggg
     1981 gcttcctgga ggtggtgagg gtcctctgtg agtgcggctg tgacgtcaac ctgcccgacg
     2041 cccatgctga cacgcccctg cactgcgcca tctcggcggg cactggcgcc agcggcatcg
     2101 tggaggtcct caccgaggtg ccgggtatcg acgtcactgc cacgaacagc caaggcttca
     2161 ccctgctgca ccacgcatcc ctcaaaggcc acacactagc agtcagaagg attctggcgc
     2221 gggcccggca gctggtggac gccaagaagg aggatgggtt cacagcgctg cacctggccg
     2281 ccctgaacga ccacagggag gtggcccagg ttctcatccg agagggccat tgtgacgtga
     2341 acgttcgcaa ccggaagctc cagtccccgc tgcacctggc tgtgcagcag gcccacgtgg
     2401 ggctggtgcc gctgctggtg gacgctggct gcagcgccaa tgccgaggac gaggaggggg
     2461 acacggctct gcatgtggca ctgcagcggc accagctgct gcccctggcg actgatgggg
     2521 ccggggggga cccaggggcc ttgcagctgc tgtcaaggct acaggcctcg ggccttccgg
     2581 gcagcatgga gctgacggtg ggcgcggcgg tcgcctgctt cttggcgctg gagggcgccg
     2641 acctgagcta tgccaaccac cgcggccgga gcccgctgga cctggcagct gagggccgcc
     2701 tgctcaaagc cctgcagggc tgtgcccagc gcttccggga gcggcaggct ggcggcggcg
     2761 ggggcgcggc ccagggccca aggctggcgc tcagtgcccc caacactgtt accaacctgc
     2821 acgtcgctgc gccgtccggg cccgaggccg ccgagtgcct ggtgtgttcg gagctggcgc
     2881 tgttggtgct gttctcgcct tgccagcacc gcatggtgtg tgaggagtgc gcccgcagga
     2941 tgaagaagtg catcaggtgc caggcggtca tcgtcaagaa gctgcgccca gacggcacgg
     3001 aggtggtcag cgccgccccc gcccccggcc caccgcggca gctggtggag gagctgcaga
     3061 gccgctaccg gcagatggag gagcgcatca cctgccccat ctgcatcgac agccacatcc
     3121 gcctcgtgtt ccagtgcggt cacggcgcct gcgcgccctg cggcgctgcg ctcagcgcct
     3181 gccccatctg ccgccagccc atccgcgacc gcatccagat cttcgtgtag cccgcgcccc
     3241 ctgcctcgtc cggggccacg ccccgcgacc gccttcgcag gctcctactc tgtattttat
     3301 aaaaagatta atggac
//
LOCUS       XM_032650876            3317 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X3, mRNA.
ACCESSION   XM_032650876
VERSION     XM_032650876.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3317
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             325..3231
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X1"
                     /protein_id="XP_032506767.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGLVCWWGHCLPGGEGKPGRVVDIRGWDVETGRSVASVTWADGT
                     TNVYRVGHKGKVDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKC
                     LLDADILRDMQEGHGGWNPRMAKCIGQMGTVHRITDRGDVRVQFNHKTRWTFHPGALS
                     KHNSCSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKVFGDGNLGVLVN
                     GKLWTFSPSCLVAYRPEEDANLDVAERARENKSSLSVVLDKLRAQKSDLEHPGRLVVE
                     VALGNVARALDLLRRHPEQVDTKNHGRTALQVAAYLGQVELVRLLLQARAGVDLPDDE
                     GSTALHYAALGNQPEAARVLLSWGCGANTLNGTQSSALHVAVQRGFLEVVRVLCECGC
                     DVNLPDAHADTPLHCAISAGTGASGIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHT
                     LAVRRILARARQLVDAKKEDGFTALHLAALNDHREVAQVLIREGHCDVNVRNRKLQSP
                     LHLAVQQAHVGLVPLLVDAGCSANAEDEEGDTALHVALQRHQLLPLATDGAGGDPGAL
                     QLLSRLQASGLPGSMELTVGAAVACFLALEGADLSYANHRGRSPLDLAAEGRLLKALQ
                     GCAQRFRERQAGGGGGAAQGPRLALSAPNTVTNLHVAAPSGPEAAECLVCSELALLVL
                     FSPCQHRMVCEECARRMKKCIRCQAVIVKKLRPDGTEVVSAAPAPGPPRQLVEELQSR
                     YRQMEERITCPICIDSHIRLVFQCGHGACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    358..558
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    589..723
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(595..597,604..606,640..642,649..651,667..669,
                     676..678,694..696,706..708)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(595..597,604..606,667..669,676..678)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(598..600,631..633,637..639,655..657,661..663)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(634..636,679..681,712..714,721..723)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(640..642,649..651,694..696,706..708)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    802..1029
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1126..1323
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1342..1533
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1699..2502
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1747..1749,1753..1755,1765..1770,1777..1785,
                     1789..1794,1804..1806,1813..1815,1840..1842,1846..1848,
                     1852..1854,1864..1869,1876..1884,1888..1893,1903..1905,
                     1912..1914,1939..1941,1945..1947,1951..1953,1963..1968,
                     1975..1983,1987..1992,2002..2004,2011..2013,2038..2040)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1747..1842
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1846..1941
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1945..2040
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2044..2148
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2155..2250
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2158..2160,2170..2175,2182..2190,2194..2199,
                     2209..2211,2218..2220,2248..2250,2254..2256,2260..2262,
                     2272..2277,2284..2292,2296..2301,2311..2313,2320..2322,
                     2350..2352,2356..2358,2362..2364,2374..2379,2386..2394,
                     2398..2403,2413..2415,2422..2424,2449..2451)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2254..2352
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2335..2685
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2356..2451
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2851..2964
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3076..3228
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3094..3096,3103..3105,3136..3138,3142..3144,
                     3151..3153,3160..3162,3181..3183,3190..3192)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 caagtatctg aaggttgtgc tcccgtccaa gattggccct gtgcagtggc tgggtcgtga
       61 caccgcagtc tgcagggtgc ctgagggctt ccatctgggt ggccaagatt tgggtgatga
      121 tgacgtccct ctacttcctt cgggccttcc cccagctgac ttgctggctg gctacctgtt
      181 tggttcgctg tgttctgcgt cggcaatcgc ttctagtttc caacaggaaa tcctggtgtc
      241 tgagcaaacc tgtgacccac gaaagagcag ctaagcatcc gggatgctga cgagaggctg
      301 gtgtgtgctg taaggtctcc caccatggag ccagaccccc aggcgggcgt gcaggtgggc
      361 atgcgcgtgg tacgcggcgt ggactggaag tggggccagc aggacggcgg cgagggcggc
      421 gtgggcacgg tggtggagct cggccgccac ggcagccctt cgacccccga ccgcacggtg
      481 gtcgtgcagt gggaccacgg cacgcgcacc aactaccgcg cgggctacca gggcgcgcat
      541 gacctgctgc tctacgacaa cgcccagatc ggcgtccgcc accccaacat tatctgcgac
      601 tgctgcaaga agcacgggct gcggggcatg cgctggaagt gccgcgtctg cttcgactac
      661 gatctctgca cgcagtgcta catgcacaac aggcacgacg tggcccacgc cttcgagcgc
      721 tacgagacgg cccactcgcg cccggtcacg ctgagtcccc gccagggcct cccaaggatc
      781 ccgttaaggg gcatcttcca gggagcgaag gtggttcggg gccccgactg ggagtggggt
      841 tcgcaggatg gcttagtctg ctggtggggc cactgtctcc caggagggga agggaagcca
      901 ggccgagtgg tggacatccg tggctgggat gtggagacgg gccggagcgt ggccagcgtg
      961 acatgggccg acggcaccac caacgtgtac cgcgtgggcc acaagggcaa ggtggacctc
     1021 aagtgtgtgg gcgaggcagc tggcggcttc tactacaggg agcatctccc gaggctcggc
     1081 aagcccgcag agctgcggcg cagggtgagc gccgacagcc agcccttcca gcacggggac
     1141 aaggtcaagt gtctgctgga cgcggacatc ctgagggaca tgcaggaagg ccacggcgga
     1201 tggaaccccc ggatggccaa gtgcatcgga cagatgggca ccgtacaccg catcacggac
     1261 cgtggggacg tgcgtgtgca gttcaaccac aagacccgct ggaccttcca cccgggggct
     1321 ctcagcaagc acaactcctg ctcggtgggg gaagtcgtgc gggtcatcga cgacctcgac
     1381 atggtgaagc ggctgcaggc cgggcacggc gagtggacag atgacatggc ccccgctctg
     1441 ggccacgtcg ggagagtgct caaggttttc ggagatggga acttgggtgt gctggtcaat
     1501 ggtaagctgt ggaccttcag cccctcctgc ctggtggcct accggcctga ggaggacgcc
     1561 aacctggacg tggccgagcg cgcccgggag aacaaaagct ccctgagtgt cgtcctggac
     1621 aagcttcgag cccagaagag tgatctggag cacccgggga ggctggtggt ggaggtggcc
     1681 ctgggcaacg tggcccgggc tctggacctg ctgcggcggc acccggagca ggtggacacc
     1741 aagaaccatg gcaggaccgc cctgcaggtg gctgcctatc taggccaggt ggagctggtg
     1801 cggctgctgc tgcaggctcg ggcgggcgtg gacctgccgg acgacgaggg cagcacggca
     1861 ctgcactacg cggcgctggg gaaccagcca gaggccgccc gggtgctcct gagctggggt
     1921 tgcggggcca acactcttaa cggcacccag agctcggcgc tgcacgtggc cgtgcagagg
     1981 ggcttcctgg aggtggtgag ggtcctctgt gagtgcggct gtgacgtcaa cctgcccgac
     2041 gcccatgctg acacgcccct gcactgcgcc atctcggcgg gcactggcgc cagcggcatc
     2101 gtggaggtcc tcaccgaggt gccgggtatc gacgtcactg ccacgaacag ccaaggcttc
     2161 accctgctgc accacgcatc cctcaaaggc cacacactag cagtcagaag gattctggcg
     2221 cgggcccggc agctggtgga cgccaagaag gaggatgggt tcacagcgct gcacctggcc
     2281 gccctgaacg accacaggga ggtggcccag gttctcatcc gagagggcca ttgtgacgtg
     2341 aacgttcgca accggaagct ccagtccccg ctgcacctgg ctgtgcagca ggcccacgtg
     2401 gggctggtgc cgctgctggt ggacgctggc tgcagcgcca atgccgagga cgaggagggg
     2461 gacacggctc tgcatgtggc actgcagcgg caccagctgc tgcccctggc gactgatggg
     2521 gccggggggg acccaggggc cttgcagctg ctgtcaaggc tacaggcctc gggccttccg
     2581 ggcagcatgg agctgacggt gggcgcggcg gtcgcctgct tcttggcgct ggagggcgcc
     2641 gacctgagct atgccaacca ccgcggccgg agcccgctgg acctggcagc tgagggccgc
     2701 ctgctcaaag ccctgcaggg ctgtgcccag cgcttccggg agcggcaggc tggcggcggc
     2761 gggggcgcgg cccagggccc aaggctggcg ctcagtgccc ccaacactgt taccaacctg
     2821 cacgtcgctg cgccgtccgg gcccgaggcc gccgagtgcc tggtgtgttc ggagctggcg
     2881 ctgttggtgc tgttctcgcc ttgccagcac cgcatggtgt gtgaggagtg cgcccgcagg
     2941 atgaagaagt gcatcaggtg ccaggcggtc atcgtcaaga agctgcgccc agacggcacg
     3001 gaggtggtca gcgccgcccc cgcccccggc ccaccgcggc agctggtgga ggagctgcag
     3061 agccgctacc ggcagatgga ggagcgcatc acctgcccca tctgcatcga cagccacatc
     3121 cgcctcgtgt tccagtgcgg tcacggcgcc tgcgcgccct gcggcgctgc gctcagcgcc
     3181 tgccccatct gccgccagcc catccgcgac cgcatccaga tcttcgtgta gcccgcgccc
     3241 cctgcctcgt ccggggccac gccccgcgac cgccttcgca ggctcctact ctgtatttta
     3301 taaaaagatt aatggac
//
LOCUS       XM_032650880            3487 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X4, mRNA.
ACCESSION   XM_032650880
VERSION     XM_032650880.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3487
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             507..3401
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X2"
                     /protein_id="XP_032506771.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGLVCWWGHCLPGGEGKPGRVVDIRGWDVETGRSVASVTWADGT
                     TNVYRVGHKGKVDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKC
                     LLDADILRDMQEGHGGWNPRMAKMGTVHRITDRGDVRVQFNHKTRWTFHPGALSKHNS
                     CSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKVFGDGNLGVLVNGKLW
                     TFSPSCLVAYRPEEDANLDVAERARENKSSLSVVLDKLRAQKSDLEHPGRLVVEVALG
                     NVARALDLLRRHPEQVDTKNHGRTALQVAAYLGQVELVRLLLQARAGVDLPDDEGSTA
                     LHYAALGNQPEAARVLLSWGCGANTLNGTQSSALHVAVQRGFLEVVRVLCECGCDVNL
                     PDAHADTPLHCAISAGTGASGIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHTLAVR
                     RILARARQLVDAKKEDGFTALHLAALNDHREVAQVLIREGHCDVNVRNRKLQSPLHLA
                     VQQAHVGLVPLLVDAGCSANAEDEEGDTALHVALQRHQLLPLATDGAGGDPGALQLLS
                     RLQASGLPGSMELTVGAAVACFLALEGADLSYANHRGRSPLDLAAEGRLLKALQGCAQ
                     RFRERQAGGGGGAAQGPRLALSAPNTVTNLHVAAPSGPEAAECLVCSELALLVLFSPC
                     QHRMVCEECARRMKKCIRCQAVIVKKLRPDGTEVVSAAPAPGPPRQLVEELQSRYRQM
                     EERITCPICIDSHIRLVFQCGHGACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    540..740
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    771..905
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(777..779,786..788,822..824,831..833,849..851,
                     858..860,876..878,888..890)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(777..779,786..788,849..851,858..860)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(780..782,813..815,819..821,837..839,843..845)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(816..818,861..863,894..896,903..905)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(822..824,831..833,876..878,888..890)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    984..1211
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1308..1493
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1512..1703
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1869..2672
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1917..1919,1923..1925,1935..1940,1947..1955,
                     1959..1964,1974..1976,1983..1985,2010..2012,2016..2018,
                     2022..2024,2034..2039,2046..2054,2058..2063,2073..2075,
                     2082..2084,2109..2111,2115..2117,2121..2123,2133..2138,
                     2145..2153,2157..2162,2172..2174,2181..2183,2208..2210)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1917..2012
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2016..2111
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2115..2210
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2214..2318
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2325..2420
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2328..2330,2340..2345,2352..2360,2364..2369,
                     2379..2381,2388..2390,2418..2420,2424..2426,2430..2432,
                     2442..2447,2454..2462,2466..2471,2481..2483,2490..2492,
                     2520..2522,2526..2528,2532..2534,2544..2549,2556..2564,
                     2568..2573,2583..2585,2592..2594,2619..2621)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2424..2522
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2505..2855
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2526..2621
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3021..3134
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3246..3398
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3264..3266,3273..3275,3306..3308,3312..3314,
                     3321..3323,3330..3332,3351..3353,3360..3362)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 tagcgggctg cggactacaa gtcccggcag gcctcgcggc ggccccagag ccccgagcgc
       61 cgggggcttc gggcggcctt ggccggtggg ctctggtgct gcgcggcgaa gcggggcggc
      121 ctggctggtt ggctgactct gagcagccta gctcgctggc cggccgccgc acacactgag
      181 gccgcagtcg gccggctgac agactcggct ctcttcaggc ccccggagcc cccacgcgaa
      241 gcaggcggga cgcaaacttc ggggcaagtg gaggggtaga caagggcacc agggccgggg
      301 actggcagcg gcgggggccc ggggcggctt cccgaggaag acttgctggc tggctacctg
      361 tttggttcgc tgtgttctgc gtcggcaatc gcttctagtt tccaacagga aatcctggtg
      421 tctgagcaaa cctgtgaccc acgaaagagc agctaagcat ccgggatgct gacgagaggc
      481 tggtgtgtgc tgtaaggtct cccaccatgg agccagaccc ccaggcgggc gtgcaggtgg
      541 gcatgcgcgt ggtacgcggc gtggactgga agtggggcca gcaggacggc ggcgagggcg
      601 gcgtgggcac ggtggtggag ctcggccgcc acggcagccc ttcgaccccc gaccgcacgg
      661 tggtcgtgca gtgggaccac ggcacgcgca ccaactaccg cgcgggctac cagggcgcgc
      721 atgacctgct gctctacgac aacgcccaga tcggcgtccg ccaccccaac attatctgcg
      781 actgctgcaa gaagcacggg ctgcggggca tgcgctggaa gtgccgcgtc tgcttcgact
      841 acgatctctg cacgcagtgc tacatgcaca acaggcacga cgtggcccac gccttcgagc
      901 gctacgagac ggcccactcg cgcccggtca cgctgagtcc ccgccagggc ctcccaagga
      961 tcccgttaag gggcatcttc cagggagcga aggtggttcg gggccccgac tgggagtggg
     1021 gttcgcagga tggcttagtc tgctggtggg gccactgtct cccaggaggg gaagggaagc
     1081 caggccgagt ggtggacatc cgtggctggg atgtggagac gggccggagc gtggccagcg
     1141 tgacatgggc cgacggcacc accaacgtgt accgcgtggg ccacaagggc aaggtggacc
     1201 tcaagtgtgt gggcgaggca gctggcggct tctactacag ggagcatctc ccgaggctcg
     1261 gcaagcccgc agagctgcgg cgcagggtga gcgccgacag ccagcccttc cagcacgggg
     1321 acaaggtcaa gtgtctgctg gacgcggaca tcctgaggga catgcaggaa ggccacggcg
     1381 gatggaaccc ccggatggcc aagatgggca ccgtacaccg catcacggac cgtggggacg
     1441 tgcgtgtgca gttcaaccac aagacccgct ggaccttcca cccgggggct ctcagcaagc
     1501 acaactcctg ctcggtgggg gaagtcgtgc gggtcatcga cgacctcgac atggtgaagc
     1561 ggctgcaggc cgggcacggc gagtggacag atgacatggc ccccgctctg ggccacgtcg
     1621 ggagagtgct caaggttttc ggagatggga acttgggtgt gctggtcaat ggtaagctgt
     1681 ggaccttcag cccctcctgc ctggtggcct accggcctga ggaggacgcc aacctggacg
     1741 tggccgagcg cgcccgggag aacaaaagct ccctgagtgt cgtcctggac aagcttcgag
     1801 cccagaagag tgatctggag cacccgggga ggctggtggt ggaggtggcc ctgggcaacg
     1861 tggcccgggc tctggacctg ctgcggcggc acccggagca ggtggacacc aagaaccatg
     1921 gcaggaccgc cctgcaggtg gctgcctatc taggccaggt ggagctggtg cggctgctgc
     1981 tgcaggctcg ggcgggcgtg gacctgccgg acgacgaggg cagcacggca ctgcactacg
     2041 cggcgctggg gaaccagcca gaggccgccc gggtgctcct gagctggggt tgcggggcca
     2101 acactcttaa cggcacccag agctcggcgc tgcacgtggc cgtgcagagg ggcttcctgg
     2161 aggtggtgag ggtcctctgt gagtgcggct gtgacgtcaa cctgcccgac gcccatgctg
     2221 acacgcccct gcactgcgcc atctcggcgg gcactggcgc cagcggcatc gtggaggtcc
     2281 tcaccgaggt gccgggtatc gacgtcactg ccacgaacag ccaaggcttc accctgctgc
     2341 accacgcatc cctcaaaggc cacacactag cagtcagaag gattctggcg cgggcccggc
     2401 agctggtgga cgccaagaag gaggatgggt tcacagcgct gcacctggcc gccctgaacg
     2461 accacaggga ggtggcccag gttctcatcc gagagggcca ttgtgacgtg aacgttcgca
     2521 accggaagct ccagtccccg ctgcacctgg ctgtgcagca ggcccacgtg gggctggtgc
     2581 cgctgctggt ggacgctggc tgcagcgcca atgccgagga cgaggagggg gacacggctc
     2641 tgcatgtggc actgcagcgg caccagctgc tgcccctggc gactgatggg gccggggggg
     2701 acccaggggc cttgcagctg ctgtcaaggc tacaggcctc gggccttccg ggcagcatgg
     2761 agctgacggt gggcgcggcg gtcgcctgct tcttggcgct ggagggcgcc gacctgagct
     2821 atgccaacca ccgcggccgg agcccgctgg acctggcagc tgagggccgc ctgctcaaag
     2881 ccctgcaggg ctgtgcccag cgcttccggg agcggcaggc tggcggcggc gggggcgcgg
     2941 cccagggccc aaggctggcg ctcagtgccc ccaacactgt taccaacctg cacgtcgctg
     3001 cgccgtccgg gcccgaggcc gccgagtgcc tggtgtgttc ggagctggcg ctgttggtgc
     3061 tgttctcgcc ttgccagcac cgcatggtgt gtgaggagtg cgcccgcagg atgaagaagt
     3121 gcatcaggtg ccaggcggtc atcgtcaaga agctgcgccc agacggcacg gaggtggtca
     3181 gcgccgcccc cgcccccggc ccaccgcggc agctggtgga ggagctgcag agccgctacc
     3241 ggcagatgga ggagcgcatc acctgcccca tctgcatcga cagccacatc cgcctcgtgt
     3301 tccagtgcgg tcacggcgcc tgcgcgccct gcggcgctgc gctcagcgcc tgccccatct
     3361 gccgccagcc catccgcgac cgcatccaga tcttcgtgta gcccgcgccc cctgcctcgt
     3421 ccggggccac gccccgcgac cgccttcgca ggctcctact ctgtatttta taaaaagatt
     3481 aatggac
//
LOCUS       XM_032650882            3465 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X5, mRNA.
ACCESSION   XM_032650882
VERSION     XM_032650882.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3465
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3465
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             506..3379
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X3"
                     /protein_id="XP_032506773.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGGEGKPGRVVDIRGWDVETGRSVASVTWADGTTNVYRVGHKGK
                     VDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKCLLDADILRDMQ
                     EGHGGWNPRMAKCIGQMGTVHRITDRGDVRVQFNHKTRWTFHPGALSKHNSCSVGEVV
                     RVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKVFGDGNLGVLVNGKLWTFSPSCL
                     VAYRPEEDANLDVAERARENKSSLSVVLDKLRAQKSDLEHPGRLVVEVALGNVARALD
                     LLRRHPEQVDTKNHGRTALQVAAYLGQVELVRLLLQARAGVDLPDDEGSTALHYAALG
                     NQPEAARVLLSWGCGANTLNGTQSSALHVAVQRGFLEVVRVLCECGCDVNLPDAHADT
                     PLHCAISAGTGASGIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHTLAVRRILARAR
                     QLVDAKKEDGFTALHLAALNDHREVAQVLIREGHCDVNVRNRKLQSPLHLAVQQAHVG
                     LVPLLVDAGCSANAEDEEGDTALHVALQRHQLLPLATDGAGGDPGALQLLSRLQASGL
                     PGSMELTVGAAVACFLALEGADLSYANHRGRSPLDLAAEGRLLKALQGCAQRFRERQA
                     GGGGGAAQGPRLALSAPNTVTNLHVAAPSGPEAAECLVCSELALLVLFSPCQHRMVCE
                     ECARRMKKCIRCQAVIVKKLRPDGTEVVSAAPAPGPPRQLVEELQSRYRQMEERITCP
                     ICIDSHIRLVFQCGHGACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    539..739
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    770..904
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(776..778,785..787,821..823,830..832,848..850,
                     857..859,875..877,887..889)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(776..778,785..787,848..850,857..859)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(779..781,812..814,818..820,836..838,842..844)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(815..817,860..862,893..895,902..904)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(821..823,830..832,875..877,887..889)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    983..1177
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1274..1471
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1490..1681
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1847..2650
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1895..1897,1901..1903,1913..1918,1925..1933,
                     1937..1942,1952..1954,1961..1963,1988..1990,1994..1996,
                     2000..2002,2012..2017,2024..2032,2036..2041,2051..2053,
                     2060..2062,2087..2089,2093..2095,2099..2101,2111..2116,
                     2123..2131,2135..2140,2150..2152,2159..2161,2186..2188)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1895..1990
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1994..2089
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2093..2188
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2192..2296
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2303..2398
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2306..2308,2318..2323,2330..2338,2342..2347,
                     2357..2359,2366..2368,2396..2398,2402..2404,2408..2410,
                     2420..2425,2432..2440,2444..2449,2459..2461,2468..2470,
                     2498..2500,2504..2506,2510..2512,2522..2527,2534..2542,
                     2546..2551,2561..2563,2570..2572,2597..2599)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2402..2500
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2483..2833
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2504..2599
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2999..3112
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3224..3376
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3242..3244,3251..3253,3284..3286,3290..3292,
                     3299..3301,3308..3310,3329..3331,3338..3340)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 agcgggctgc ggactacaag tcccggcagg cctcgcggcg gccccagagc cccgagcgcc
       61 gggggcttcg ggcggccttg gccggtgggc tctggtgctg cgcggcgaag cggggcggcc
      121 tggctggttg gctgactctg agcagcctag ctcgctggcc ggccgccgca cacactgagg
      181 ccgcagtcgg ccggctgaca gactcggctc tcttcaggcc cccggagccc ccacgcgaag
      241 caggcgggac gcaaacttcg gggcaagtgg aggggtagac aagggcacca gggccgggga
      301 ctggcagcgg cgggggcccg gggcggcttc ccgaggaaga cttgctggct ggctacctgt
      361 ttggttcgct gtgttctgcg tcggcaatcg cttctagttt ccaacaggaa atcctggtgt
      421 ctgagcaaac ctgtgaccca cgaaagagca gctaagcatc cgggatgctg acgagaggct
      481 ggtgtgtgct gtaaggtctc ccaccatgga gccagacccc caggcgggcg tgcaggtggg
      541 catgcgcgtg gtacgcggcg tggactggaa gtggggccag caggacggcg gcgagggcgg
      601 cgtgggcacg gtggtggagc tcggccgcca cggcagccct tcgacccccg accgcacggt
      661 ggtcgtgcag tgggaccacg gcacgcgcac caactaccgc gcgggctacc agggcgcgca
      721 tgacctgctg ctctacgaca acgcccagat cggcgtccgc caccccaaca ttatctgcga
      781 ctgctgcaag aagcacgggc tgcggggcat gcgctggaag tgccgcgtct gcttcgacta
      841 cgatctctgc acgcagtgct acatgcacaa caggcacgac gtggcccacg ccttcgagcg
      901 ctacgagacg gcccactcgc gcccggtcac gctgagtccc cgccagggcc tcccaaggat
      961 cccgttaagg ggcatcttcc agggagcgaa ggtggttcgg ggccccgact gggagtgggg
     1021 ttcgcaggat ggaggggaag ggaagccagg ccgagtggtg gacatccgtg gctgggatgt
     1081 ggagacgggc cggagcgtgg ccagcgtgac atgggccgac ggcaccacca acgtgtaccg
     1141 cgtgggccac aagggcaagg tggacctcaa gtgtgtgggc gaggcagctg gcggcttcta
     1201 ctacagggag catctcccga ggctcggcaa gcccgcagag ctgcggcgca gggtgagcgc
     1261 cgacagccag cccttccagc acggggacaa ggtcaagtgt ctgctggacg cggacatcct
     1321 gagggacatg caggaaggcc acggcggatg gaacccccgg atggccaagt gcatcggaca
     1381 gatgggcacc gtacaccgca tcacggaccg tggggacgtg cgtgtgcagt tcaaccacaa
     1441 gacccgctgg accttccacc cgggggctct cagcaagcac aactcctgct cggtggggga
     1501 agtcgtgcgg gtcatcgacg acctcgacat ggtgaagcgg ctgcaggccg ggcacggcga
     1561 gtggacagat gacatggccc ccgctctggg ccacgtcggg agagtgctca aggttttcgg
     1621 agatgggaac ttgggtgtgc tggtcaatgg taagctgtgg accttcagcc cctcctgcct
     1681 ggtggcctac cggcctgagg aggacgccaa cctggacgtg gccgagcgcg cccgggagaa
     1741 caaaagctcc ctgagtgtcg tcctggacaa gcttcgagcc cagaagagtg atctggagca
     1801 cccggggagg ctggtggtgg aggtggccct gggcaacgtg gcccgggctc tggacctgct
     1861 gcggcggcac ccggagcagg tggacaccaa gaaccatggc aggaccgccc tgcaggtggc
     1921 tgcctatcta ggccaggtgg agctggtgcg gctgctgctg caggctcggg cgggcgtgga
     1981 cctgccggac gacgagggca gcacggcact gcactacgcg gcgctgggga accagccaga
     2041 ggccgcccgg gtgctcctga gctggggttg cggggccaac actcttaacg gcacccagag
     2101 ctcggcgctg cacgtggccg tgcagagggg cttcctggag gtggtgaggg tcctctgtga
     2161 gtgcggctgt gacgtcaacc tgcccgacgc ccatgctgac acgcccctgc actgcgccat
     2221 ctcggcgggc actggcgcca gcggcatcgt ggaggtcctc accgaggtgc cgggtatcga
     2281 cgtcactgcc acgaacagcc aaggcttcac cctgctgcac cacgcatccc tcaaaggcca
     2341 cacactagca gtcagaagga ttctggcgcg ggcccggcag ctggtggacg ccaagaagga
     2401 ggatgggttc acagcgctgc acctggccgc cctgaacgac cacagggagg tggcccaggt
     2461 tctcatccga gagggccatt gtgacgtgaa cgttcgcaac cggaagctcc agtccccgct
     2521 gcacctggct gtgcagcagg cccacgtggg gctggtgccg ctgctggtgg acgctggctg
     2581 cagcgccaat gccgaggacg aggaggggga cacggctctg catgtggcac tgcagcggca
     2641 ccagctgctg cccctggcga ctgatggggc cgggggggac ccaggggcct tgcagctgct
     2701 gtcaaggcta caggcctcgg gccttccggg cagcatggag ctgacggtgg gcgcggcggt
     2761 cgcctgcttc ttggcgctgg agggcgccga cctgagctat gccaaccacc gcggccggag
     2821 cccgctggac ctggcagctg agggccgcct gctcaaagcc ctgcagggct gtgcccagcg
     2881 cttccgggag cggcaggctg gcggcggcgg gggcgcggcc cagggcccaa ggctggcgct
     2941 cagtgccccc aacactgtta ccaacctgca cgtcgctgcg ccgtccgggc ccgaggccgc
     3001 cgagtgcctg gtgtgttcgg agctggcgct gttggtgctg ttctcgcctt gccagcaccg
     3061 catggtgtgt gaggagtgcg cccgcaggat gaagaagtgc atcaggtgcc aggcggtcat
     3121 cgtcaagaag ctgcgcccag acggcacgga ggtggtcagc gccgcccccg cccccggccc
     3181 accgcggcag ctggtggagg agctgcagag ccgctaccgg cagatggagg agcgcatcac
     3241 ctgccccatc tgcatcgaca gccacatccg cctcgtgttc cagtgcggtc acggcgcctg
     3301 cgcgccctgc ggcgctgcgc tcagcgcctg ccccatctgc cgccagccca tccgcgaccg
     3361 catccagatc ttcgtgtagc ccgcgccccc tgcctcgtcc ggggccacgc cccgcgaccg
     3421 ccttcgcagg ctcctactct gtattttata aaaagattaa tggac
//
LOCUS       XM_032650886            3453 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X6, mRNA.
ACCESSION   XM_032650886
VERSION     XM_032650886.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3453
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3453
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             506..3367
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X4"
                     /protein_id="XP_032506777.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGGEGKPGRVVDIRGWDVETGRSVASVTWADGTTNVYRVGHKGK
                     VDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKCLLDADILRDMQ
                     EGHGGWNPRMAKMGTVHRITDRGDVRVQFNHKTRWTFHPGALSKHNSCSVGEVVRVID
                     DLDMVKRLQAGHGEWTDDMAPALGHVGRVLKVFGDGNLGVLVNGKLWTFSPSCLVAYR
                     PEEDANLDVAERARENKSSLSVVLDKLRAQKSDLEHPGRLVVEVALGNVARALDLLRR
                     HPEQVDTKNHGRTALQVAAYLGQVELVRLLLQARAGVDLPDDEGSTALHYAALGNQPE
                     AARVLLSWGCGANTLNGTQSSALHVAVQRGFLEVVRVLCECGCDVNLPDAHADTPLHC
                     AISAGTGASGIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHTLAVRRILARARQLVD
                     AKKEDGFTALHLAALNDHREVAQVLIREGHCDVNVRNRKLQSPLHLAVQQAHVGLVPL
                     LVDAGCSANAEDEEGDTALHVALQRHQLLPLATDGAGGDPGALQLLSRLQASGLPGSM
                     ELTVGAAVACFLALEGADLSYANHRGRSPLDLAAEGRLLKALQGCAQRFRERQAGGGG
                     GAAQGPRLALSAPNTVTNLHVAAPSGPEAAECLVCSELALLVLFSPCQHRMVCEECAR
                     RMKKCIRCQAVIVKKLRPDGTEVVSAAPAPGPPRQLVEELQSRYRQMEERITCPICID
                     SHIRLVFQCGHGACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    539..739
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    770..904
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(776..778,785..787,821..823,830..832,848..850,
                     857..859,875..877,887..889)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(776..778,785..787,848..850,857..859)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(779..781,812..814,818..820,836..838,842..844)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(815..817,860..862,893..895,902..904)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(821..823,830..832,875..877,887..889)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    983..1177
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1274..1459
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1478..1669
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1835..2638
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1883..1885,1889..1891,1901..1906,1913..1921,
                     1925..1930,1940..1942,1949..1951,1976..1978,1982..1984,
                     1988..1990,2000..2005,2012..2020,2024..2029,2039..2041,
                     2048..2050,2075..2077,2081..2083,2087..2089,2099..2104,
                     2111..2119,2123..2128,2138..2140,2147..2149,2174..2176)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1883..1978
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1982..2077
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2081..2176
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2180..2284
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2291..2386
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2294..2296,2306..2311,2318..2326,2330..2335,
                     2345..2347,2354..2356,2384..2386,2390..2392,2396..2398,
                     2408..2413,2420..2428,2432..2437,2447..2449,2456..2458,
                     2486..2488,2492..2494,2498..2500,2510..2515,2522..2530,
                     2534..2539,2549..2551,2558..2560,2585..2587)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2390..2488
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2471..2821
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2492..2587
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2987..3100
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3212..3364
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3230..3232,3239..3241,3272..3274,3278..3280,
                     3287..3289,3296..3298,3317..3319,3326..3328)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 agcgggctgc ggactacaag tcccggcagg cctcgcggcg gccccagagc cccgagcgcc
       61 gggggcttcg ggcggccttg gccggtgggc tctggtgctg cgcggcgaag cggggcggcc
      121 tggctggttg gctgactctg agcagcctag ctcgctggcc ggccgccgca cacactgagg
      181 ccgcagtcgg ccggctgaca gactcggctc tcttcaggcc cccggagccc ccacgcgaag
      241 caggcgggac gcaaacttcg gggcaagtgg aggggtagac aagggcacca gggccgggga
      301 ctggcagcgg cgggggcccg gggcggcttc ccgaggaaga cttgctggct ggctacctgt
      361 ttggttcgct gtgttctgcg tcggcaatcg cttctagttt ccaacaggaa atcctggtgt
      421 ctgagcaaac ctgtgaccca cgaaagagca gctaagcatc cgggatgctg acgagaggct
      481 ggtgtgtgct gtaaggtctc ccaccatgga gccagacccc caggcgggcg tgcaggtggg
      541 catgcgcgtg gtacgcggcg tggactggaa gtggggccag caggacggcg gcgagggcgg
      601 cgtgggcacg gtggtggagc tcggccgcca cggcagccct tcgacccccg accgcacggt
      661 ggtcgtgcag tgggaccacg gcacgcgcac caactaccgc gcgggctacc agggcgcgca
      721 tgacctgctg ctctacgaca acgcccagat cggcgtccgc caccccaaca ttatctgcga
      781 ctgctgcaag aagcacgggc tgcggggcat gcgctggaag tgccgcgtct gcttcgacta
      841 cgatctctgc acgcagtgct acatgcacaa caggcacgac gtggcccacg ccttcgagcg
      901 ctacgagacg gcccactcgc gcccggtcac gctgagtccc cgccagggcc tcccaaggat
      961 cccgttaagg ggcatcttcc agggagcgaa ggtggttcgg ggccccgact gggagtgggg
     1021 ttcgcaggat ggaggggaag ggaagccagg ccgagtggtg gacatccgtg gctgggatgt
     1081 ggagacgggc cggagcgtgg ccagcgtgac atgggccgac ggcaccacca acgtgtaccg
     1141 cgtgggccac aagggcaagg tggacctcaa gtgtgtgggc gaggcagctg gcggcttcta
     1201 ctacagggag catctcccga ggctcggcaa gcccgcagag ctgcggcgca gggtgagcgc
     1261 cgacagccag cccttccagc acggggacaa ggtcaagtgt ctgctggacg cggacatcct
     1321 gagggacatg caggaaggcc acggcggatg gaacccccgg atggccaaga tgggcaccgt
     1381 acaccgcatc acggaccgtg gggacgtgcg tgtgcagttc aaccacaaga cccgctggac
     1441 cttccacccg ggggctctca gcaagcacaa ctcctgctcg gtgggggaag tcgtgcgggt
     1501 catcgacgac ctcgacatgg tgaagcggct gcaggccggg cacggcgagt ggacagatga
     1561 catggccccc gctctgggcc acgtcgggag agtgctcaag gttttcggag atgggaactt
     1621 gggtgtgctg gtcaatggta agctgtggac cttcagcccc tcctgcctgg tggcctaccg
     1681 gcctgaggag gacgccaacc tggacgtggc cgagcgcgcc cgggagaaca aaagctccct
     1741 gagtgtcgtc ctggacaagc ttcgagccca gaagagtgat ctggagcacc cggggaggct
     1801 ggtggtggag gtggccctgg gcaacgtggc ccgggctctg gacctgctgc ggcggcaccc
     1861 ggagcaggtg gacaccaaga accatggcag gaccgccctg caggtggctg cctatctagg
     1921 ccaggtggag ctggtgcggc tgctgctgca ggctcgggcg ggcgtggacc tgccggacga
     1981 cgagggcagc acggcactgc actacgcggc gctggggaac cagccagagg ccgcccgggt
     2041 gctcctgagc tggggttgcg gggccaacac tcttaacggc acccagagct cggcgctgca
     2101 cgtggccgtg cagaggggct tcctggaggt ggtgagggtc ctctgtgagt gcggctgtga
     2161 cgtcaacctg cccgacgccc atgctgacac gcccctgcac tgcgccatct cggcgggcac
     2221 tggcgccagc ggcatcgtgg aggtcctcac cgaggtgccg ggtatcgacg tcactgccac
     2281 gaacagccaa ggcttcaccc tgctgcacca cgcatccctc aaaggccaca cactagcagt
     2341 cagaaggatt ctggcgcggg cccggcagct ggtggacgcc aagaaggagg atgggttcac
     2401 agcgctgcac ctggccgccc tgaacgacca cagggaggtg gcccaggttc tcatccgaga
     2461 gggccattgt gacgtgaacg ttcgcaaccg gaagctccag tccccgctgc acctggctgt
     2521 gcagcaggcc cacgtggggc tggtgccgct gctggtggac gctggctgca gcgccaatgc
     2581 cgaggacgag gagggggaca cggctctgca tgtggcactg cagcggcacc agctgctgcc
     2641 cctggcgact gatggggccg ggggggaccc aggggccttg cagctgctgt caaggctaca
     2701 ggcctcgggc cttccgggca gcatggagct gacggtgggc gcggcggtcg cctgcttctt
     2761 ggcgctggag ggcgccgacc tgagctatgc caaccaccgc ggccggagcc cgctggacct
     2821 ggcagctgag ggccgcctgc tcaaagccct gcagggctgt gcccagcgct tccgggagcg
     2881 gcaggctggc ggcggcgggg gcgcggccca gggcccaagg ctggcgctca gtgcccccaa
     2941 cactgttacc aacctgcacg tcgctgcgcc gtccgggccc gaggccgccg agtgcctggt
     3001 gtgttcggag ctggcgctgt tggtgctgtt ctcgccttgc cagcaccgca tggtgtgtga
     3061 ggagtgcgcc cgcaggatga agaagtgcat caggtgccag gcggtcatcg tcaagaagct
     3121 gcgcccagac ggcacggagg tggtcagcgc cgcccccgcc cccggcccac cgcggcagct
     3181 ggtggaggag ctgcagagcc gctaccggca gatggaggag cgcatcacct gccccatctg
     3241 catcgacagc cacatccgcc tcgtgttcca gtgcggtcac ggcgcctgcg cgccctgcgg
     3301 cgctgcgctc agcgcctgcc ccatctgccg ccagcccatc cgcgaccgca tccagatctt
     3361 cgtgtagccc gcgccccctg cctcgtccgg ggccacgccc cgcgaccgcc ttcgcaggct
     3421 cctactctgt attttataaa aagattaatg gac
//
LOCUS       XM_032650895            3440 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X7, mRNA.
ACCESSION   XM_032650895
VERSION     XM_032650895.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3440
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3440
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 1 Protein, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             508..3354
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X5"
                     /protein_id="XP_032506786.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGGEGKPGRVVDIRGWDVETGRSVASVTWADGTTNVYRVGHKGK
                     VDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKCLLDADILRDMQ
                     EGHGGWNPRMAKHNSCSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKV
                     FGDGNLGVLVNGKLWTFSPSCLVAYRPEEDANLDVAERARENKSEGIQRGRLVGGEAA
                     PGHHRTSALPSPGSLSVVLDKLRAQKSDLEHPGRLVVEVALGNVARALDLLRRHPEQV
                     DTKNHGRTALQVAAYLGQVELVRLLLQARAGVDLPDDEGSTALHYAALGNQPEAARVL
                     LSWGCGANTLNGTQSSALHVAVQRGFLEVVRVLCECGCDVNLPDAHADTPLHCAISAG
                     TGASGIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHTLAVRRILARARQLVDAKKED
                     GFTALHLAALNDHREVAQVLIREGHCDVNVRNRKLQSPLHLAVQQAHVGLVPLLVDAG
                     CSANAEDEEGDTALHVALQRHQLLPLATDGAGGDPGALQLLSRLQASGLPGSMELTVG
                     AAVACFLALEGADLSYANHRGRSPLDLAAEGRLLKALQGCAQRFRERQAGGGGGAAQG
                     PRLALSAPNTVTNLHVAAPSGPEAAECLVCSELALLVLFSPCQHRMVCEECARRMKKC
                     IRCQAVIVKKLRPDGTEVVSAAPAPGPPRQLVEELQSRYRQMEERITCPICIDSHIRL
                     VFQCGHGACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    541..741
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    772..906
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(778..780,787..789,823..825,832..834,850..852,
                     859..861,877..879,889..891)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(778..780,787..789,850..852,859..861)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(781..783,814..816,820..822,838..840,844..846)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(817..819,862..864,895..897,904..906)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(823..825,832..834,877..879,889..891)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    985..1179
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1384..1575
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1822..2625
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1870..1872,1876..1878,1888..1893,1900..1908,
                     1912..1917,1927..1929,1936..1938,1963..1965,1969..1971,
                     1975..1977,1987..1992,1999..2007,2011..2016,2026..2028,
                     2035..2037,2062..2064,2068..2070,2074..2076,2086..2091,
                     2098..2106,2110..2115,2125..2127,2134..2136,2161..2163)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1870..1965
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1969..2064
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2068..2163
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2167..2271
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2278..2373
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2281..2283,2293..2298,2305..2313,2317..2322,
                     2332..2334,2341..2343,2371..2373,2377..2379,2383..2385,
                     2395..2400,2407..2415,2419..2424,2434..2436,2443..2445,
                     2473..2475,2479..2481,2485..2487,2497..2502,2509..2517,
                     2521..2526,2536..2538,2545..2547,2572..2574)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2377..2475
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2458..2808
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2479..2574
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2974..3087
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3199..3351
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3217..3219,3226..3228,3259..3261,3265..3267,
                     3274..3276,3283..3285,3304..3306,3313..3315)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 ttagcgggct gcggactaca agtcccggca ggcctcgcgg cggccccaga gccccgagcg
       61 ccgggggctt cgggcggcct tggccggtgg gctctggtgc tgcgcggcga agcggggcgg
      121 cctggctggt tggctgactc tgagcagcct agctcgctgg ccggccgccg cacacactga
      181 ggccgcagtc ggccggctga cagactcggc tctcttcagg cccccggagc ccccacgcga
      241 agcaggcggg acgcaaactt cggggcaagt ggaggggtag acaagggcac cagggccggg
      301 gactggcagc ggcgggggcc cggggcggct tcccgaggaa gacttgctgg ctggctacct
      361 gtttggttcg ctgtgttctg cgtcggcaat cgcttctagt ttccaacagg aaatcctggt
      421 gtctgagcaa acctgtgacc cacgaaagag cagctaagca tccgggatgc tgacgagagg
      481 ctggtgtgtg ctgtaaggtc tcccaccatg gagccagacc cccaggcggg cgtgcaggtg
      541 ggcatgcgcg tggtacgcgg cgtggactgg aagtggggcc agcaggacgg cggcgagggc
      601 ggcgtgggca cggtggtgga gctcggccgc cacggcagcc cttcgacccc cgaccgcacg
      661 gtggtcgtgc agtgggacca cggcacgcgc accaactacc gcgcgggcta ccagggcgcg
      721 catgacctgc tgctctacga caacgcccag atcggcgtcc gccaccccaa cattatctgc
      781 gactgctgca agaagcacgg gctgcggggc atgcgctgga agtgccgcgt ctgcttcgac
      841 tacgatctct gcacgcagtg ctacatgcac aacaggcacg acgtggccca cgccttcgag
      901 cgctacgaga cggcccactc gcgcccggtc acgctgagtc cccgccaggg cctcccaagg
      961 atcccgttaa ggggcatctt ccagggagcg aaggtggttc ggggccccga ctgggagtgg
     1021 ggttcgcagg atggagggga agggaagcca ggccgagtgg tggacatccg tggctgggat
     1081 gtggagacgg gccggagcgt ggccagcgtg acatgggccg acggcaccac caacgtgtac
     1141 cgcgtgggcc acaagggcaa ggtggacctc aagtgtgtgg gcgaggcagc tggcggcttc
     1201 tactacaggg agcatctccc gaggctcggc aagcccgcag agctgcggcg cagggtgagc
     1261 gccgacagcc agcccttcca gcacggggac aaggtcaagt gtctgctgga cgcggacatc
     1321 ctgagggaca tgcaggaagg ccacggcgga tggaaccccc ggatggccaa gcacaactcc
     1381 tgctcggtgg gggaagtcgt gcgggtcatc gacgacctcg acatggtgaa gcggctgcag
     1441 gccgggcacg gcgagtggac agatgacatg gcccccgctc tgggccacgt cgggagagtg
     1501 ctcaaggttt tcggagatgg gaacttgggt gtgctggtca atggtaagct gtggaccttc
     1561 agcccctcct gcctggtggc ctaccggcct gaggaggacg ccaacctgga cgtggccgag
     1621 cgcgcccggg agaacaaaag tgagggcatc cagcgcgggc ggctggtggg gggcgaggcc
     1681 gcccccggcc accaccgaac ctcagccctg ccctccccag gctccctgag tgtcgtcctg
     1741 gacaagcttc gagcccagaa gagtgatctg gagcacccgg ggaggctggt ggtggaggtg
     1801 gccctgggca acgtggcccg ggctctggac ctgctgcggc ggcacccgga gcaggtggac
     1861 accaagaacc atggcaggac cgccctgcag gtggctgcct atctaggcca ggtggagctg
     1921 gtgcggctgc tgctgcaggc tcgggcgggc gtggacctgc cggacgacga gggcagcacg
     1981 gcactgcact acgcggcgct ggggaaccag ccagaggccg cccgggtgct cctgagctgg
     2041 ggttgcgggg ccaacactct taacggcacc cagagctcgg cgctgcacgt ggccgtgcag
     2101 aggggcttcc tggaggtggt gagggtcctc tgtgagtgcg gctgtgacgt caacctgccc
     2161 gacgcccatg ctgacacgcc cctgcactgc gccatctcgg cgggcactgg cgccagcggc
     2221 atcgtggagg tcctcaccga ggtgccgggt atcgacgtca ctgccacgaa cagccaaggc
     2281 ttcaccctgc tgcaccacgc atccctcaaa ggccacacac tagcagtcag aaggattctg
     2341 gcgcgggccc ggcagctggt ggacgccaag aaggaggatg ggttcacagc gctgcacctg
     2401 gccgccctga acgaccacag ggaggtggcc caggttctca tccgagaggg ccattgtgac
     2461 gtgaacgttc gcaaccggaa gctccagtcc ccgctgcacc tggctgtgca gcaggcccac
     2521 gtggggctgg tgccgctgct ggtggacgct ggctgcagcg ccaatgccga ggacgaggag
     2581 ggggacacgg ctctgcatgt ggcactgcag cggcaccagc tgctgcccct ggcgactgat
     2641 ggggccgggg gggacccagg ggccttgcag ctgctgtcaa ggctacaggc ctcgggcctt
     2701 ccgggcagca tggagctgac ggtgggcgcg gcggtcgcct gcttcttggc gctggagggc
     2761 gccgacctga gctatgccaa ccaccgcggc cggagcccgc tggacctggc agctgagggc
     2821 cgcctgctca aagccctgca gggctgtgcc cagcgcttcc gggagcggca ggctggcggc
     2881 ggcgggggcg cggcccaggg cccaaggctg gcgctcagtg cccccaacac tgttaccaac
     2941 ctgcacgtcg ctgcgccgtc cgggcccgag gccgccgagt gcctggtgtg ttcggagctg
     3001 gcgctgttgg tgctgttctc gccttgccag caccgcatgg tgtgtgagga gtgcgcccgc
     3061 aggatgaaga agtgcatcag gtgccaggcg gtcatcgtca agaagctgcg cccagacggc
     3121 acggaggtgg tcagcgccgc ccccgccccc ggcccaccgc ggcagctggt ggaggagctg
     3181 cagagccgct accggcagat ggaggagcgc atcacctgcc ccatctgcat cgacagccac
     3241 atccgcctcg tgttccagtg cggtcacggc gcctgcgcgc cctgcggcgc tgcgctcagc
     3301 gcctgcccca tctgccgcca gcccatccgc gaccgcatcc agatcttcgt gtagcccgcg
     3361 ccccctgcct cgtccggggc cacgccccgc gaccgccttc gcaggctcct actctgtatt
     3421 ttataaaaag attaatggac
//
LOCUS       XM_032650900            3434 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X8, mRNA.
ACCESSION   XM_032650900
VERSION     XM_032650900.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3434
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763299"
     CDS             508..3348
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X6"
                     /protein_id="XP_032506791.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGLVCWWGHCLPGGEGKPGRVVDIRGWDVETGRSVASVTWADGT
                     TNVYRVGHKGKVDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKC
                     LLDADILRDMQEGHGGWNPRMAKCIGQMGTVHRITDRGDVRVQFNHKTRWTFHPGALS
                     KHNSCSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKVFGDGNLGVLVN
                     GKLWTFSPSCLVAYRPEEDANLDVAERARENKSSLSVVLDKLRAQKSDLEHPGRLVVE
                     VALGNVARALDLLRRHPEQVDTKNHGRTALQVAAYLGQVELVRLLLQARAGVDLPDDE
                     GSTALHYAALGNQPEAARVLLSWGCGANTLNGTQSSALHVAVQRGFLEVVRVLCECGC
                     DVNLPDAHADTPLHCAISAGTGASGIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHT
                     LAVRRILARARQLVDAKKEDGFTALHLAALNDHREVAQVLIREGHCDVNVRNRKLQSP
                     LHLAVQQAHVGLVPLLVDAGCSANAEDEEGDTALHVALQRHQLLPLATDGAGGDPGAL
                     QLLSRLQASGLPGSMELTVGAAVACFLALEGADLSYANHRGRSPLDLAAEGRLLKALQ
                     GCAQRFRERQAGGGGGAAQGPRLALSAPNTVTNLHVAAPSGPEAAECLVCSELALLVL
                     FSPCQHRMVCEDGTEVVSAAPAPGPPRQLVEELQSRYRQMEERITCPICIDSHIRLVF
                     QCGHGACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    541..741
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    772..906
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(778..780,787..789,823..825,832..834,850..852,
                     859..861,877..879,889..891)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(778..780,787..789,850..852,859..861)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(781..783,814..816,820..822,838..840,844..846)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(817..819,862..864,895..897,904..906)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(823..825,832..834,877..879,889..891)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    985..1212
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1309..1506
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1525..1716
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1882..2685
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1930..1932,1936..1938,1948..1953,1960..1968,
                     1972..1977,1987..1989,1996..1998,2023..2025,2029..2031,
                     2035..2037,2047..2052,2059..2067,2071..2076,2086..2088,
                     2095..2097,2122..2124,2128..2130,2134..2136,2146..2151,
                     2158..2166,2170..2175,2185..2187,2194..2196,2221..2223)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1930..2025
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2029..2124
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2128..2223
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2227..2331
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2338..2433
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2341..2343,2353..2358,2365..2373,2377..2382,
                     2392..2394,2401..2403,2431..2433,2437..2439,2443..2445,
                     2455..2460,2467..2475,2479..2484,2494..2496,2503..2505,
                     2533..2535,2539..2541,2545..2547,2557..2562,2569..2577,
                     2581..2586,2596..2598,2605..2607,2632..2634)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2437..2535
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2518..2868
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2539..2634
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3034..>3111
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    3193..3345
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3211..3213,3220..3222,3253..3255,3259..3261,
                     3268..3270,3277..3279,3298..3300,3307..3309)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 ttagcgggct gcggactaca agtcccggca ggcctcgcgg cggccccaga gccccgagcg
       61 ccgggggctt cgggcggcct tggccggtgg gctctggtgc tgcgcggcga agcggggcgg
      121 cctggctggt tggctgactc tgagcagcct agctcgctgg ccggccgccg cacacactga
      181 ggccgcagtc ggccggctga cagactcggc tctcttcagg cccccggagc ccccacgcga
      241 agcaggcggg acgcaaactt cggggcaagt ggaggggtag acaagggcac cagggccggg
      301 gactggcagc ggcgggggcc cggggcggct tcccgaggaa gacttgctgg ctggctacct
      361 gtttggttcg ctgtgttctg cgtcggcaat cgcttctagt ttccaacagg aaatcctggt
      421 gtctgagcaa acctgtgacc cacgaaagag cagctaagca tccgggatgc tgacgagagg
      481 ctggtgtgtg ctgtaaggtc tcccaccatg gagccagacc cccaggcggg cgtgcaggtg
      541 ggcatgcgcg tggtacgcgg cgtggactgg aagtggggcc agcaggacgg cggcgagggc
      601 ggcgtgggca cggtggtgga gctcggccgc cacggcagcc cttcgacccc cgaccgcacg
      661 gtggtcgtgc agtgggacca cggcacgcgc accaactacc gcgcgggcta ccagggcgcg
      721 catgacctgc tgctctacga caacgcccag atcggcgtcc gccaccccaa cattatctgc
      781 gactgctgca agaagcacgg gctgcggggc atgcgctgga agtgccgcgt ctgcttcgac
      841 tacgatctct gcacgcagtg ctacatgcac aacaggcacg acgtggccca cgccttcgag
      901 cgctacgaga cggcccactc gcgcccggtc acgctgagtc cccgccaggg cctcccaagg
      961 atcccgttaa ggggcatctt ccagggagcg aaggtggttc ggggccccga ctgggagtgg
     1021 ggttcgcagg atggcttagt ctgctggtgg ggccactgtc tcccaggagg ggaagggaag
     1081 ccaggccgag tggtggacat ccgtggctgg gatgtggaga cgggccggag cgtggccagc
     1141 gtgacatggg ccgacggcac caccaacgtg taccgcgtgg gccacaaggg caaggtggac
     1201 ctcaagtgtg tgggcgaggc agctggcggc ttctactaca gggagcatct cccgaggctc
     1261 ggcaagcccg cagagctgcg gcgcagggtg agcgccgaca gccagccctt ccagcacggg
     1321 gacaaggtca agtgtctgct ggacgcggac atcctgaggg acatgcagga aggccacggc
     1381 ggatggaacc cccggatggc caagtgcatc ggacagatgg gcaccgtaca ccgcatcacg
     1441 gaccgtgggg acgtgcgtgt gcagttcaac cacaagaccc gctggacctt ccacccgggg
     1501 gctctcagca agcacaactc ctgctcggtg ggggaagtcg tgcgggtcat cgacgacctc
     1561 gacatggtga agcggctgca ggccgggcac ggcgagtgga cagatgacat ggcccccgct
     1621 ctgggccacg tcgggagagt gctcaaggtt ttcggagatg ggaacttggg tgtgctggtc
     1681 aatggtaagc tgtggacctt cagcccctcc tgcctggtgg cctaccggcc tgaggaggac
     1741 gccaacctgg acgtggccga gcgcgcccgg gagaacaaaa gctccctgag tgtcgtcctg
     1801 gacaagcttc gagcccagaa gagtgatctg gagcacccgg ggaggctggt ggtggaggtg
     1861 gccctgggca acgtggcccg ggctctggac ctgctgcggc ggcacccgga gcaggtggac
     1921 accaagaacc atggcaggac cgccctgcag gtggctgcct atctaggcca ggtggagctg
     1981 gtgcggctgc tgctgcaggc tcgggcgggc gtggacctgc cggacgacga gggcagcacg
     2041 gcactgcact acgcggcgct ggggaaccag ccagaggccg cccgggtgct cctgagctgg
     2101 ggttgcgggg ccaacactct taacggcacc cagagctcgg cgctgcacgt ggccgtgcag
     2161 aggggcttcc tggaggtggt gagggtcctc tgtgagtgcg gctgtgacgt caacctgccc
     2221 gacgcccatg ctgacacgcc cctgcactgc gccatctcgg cgggcactgg cgccagcggc
     2281 atcgtggagg tcctcaccga ggtgccgggt atcgacgtca ctgccacgaa cagccaaggc
     2341 ttcaccctgc tgcaccacgc atccctcaaa ggccacacac tagcagtcag aaggattctg
     2401 gcgcgggccc ggcagctggt ggacgccaag aaggaggatg ggttcacagc gctgcacctg
     2461 gccgccctga acgaccacag ggaggtggcc caggttctca tccgagaggg ccattgtgac
     2521 gtgaacgttc gcaaccggaa gctccagtcc ccgctgcacc tggctgtgca gcaggcccac
     2581 gtggggctgg tgccgctgct ggtggacgct ggctgcagcg ccaatgccga ggacgaggag
     2641 ggggacacgg ctctgcatgt ggcactgcag cggcaccagc tgctgcccct ggcgactgat
     2701 ggggccgggg gggacccagg ggccttgcag ctgctgtcaa ggctacaggc ctcgggcctt
     2761 ccgggcagca tggagctgac ggtgggcgcg gcggtcgcct gcttcttggc gctggagggc
     2821 gccgacctga gctatgccaa ccaccgcggc cggagcccgc tggacctggc agctgagggc
     2881 cgcctgctca aagccctgca gggctgtgcc cagcgcttcc gggagcggca ggctggcggc
     2941 ggcgggggcg cggcccaggg cccaaggctg gcgctcagtg cccccaacac tgttaccaac
     3001 ctgcacgtcg ctgcgccgtc cgggcccgag gccgccgagt gcctggtgtg ttcggagctg
     3061 gcgctgttgg tgctgttctc gccttgccag caccgcatgg tgtgtgagga cggcacggag
     3121 gtggtcagcg ccgcccccgc ccccggccca ccgcggcagc tggtggagga gctgcagagc
     3181 cgctaccggc agatggagga gcgcatcacc tgccccatct gcatcgacag ccacatccgc
     3241 ctcgtgttcc agtgcggtca cggcgcctgc gcgccctgcg gcgctgcgct cagcgcctgc
     3301 cccatctgcc gccagcccat ccgcgaccgc atccagatct tcgtgtagcc cgcgccccct
     3361 gcctcgtccg gggccacgcc ccgcgaccgc cttcgcaggc tcctactctg tattttataa
     3421 aaagattaat ggac
//
LOCUS       XM_032650907            3390 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X9, mRNA.
ACCESSION   XM_032650907
VERSION     XM_032650907.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3390
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             506..3304
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X7"
                     /protein_id="XP_032506798.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGLVCWWGHCLPGGEGKPGRVVDIRGWDVETGRSVASVTWADGT
                     TNVYRVGHKGKVDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKC
                     LLDADILRDMQEGHGGWNPRMAKHNSCSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAP
                     ALGHVGRVLKVFGDGNLGVLVNGKLWTFSPSCLVAYRPEEDANLDVAERARENKSSLS
                     VVLDKLRAQKSDLEHPGRLVVEVALGNVARALDLLRRHPEQVDTKNHGRTALQVAAYL
                     GQVELVRLLLQARAGVDLPDDEGSTALHYAALGNQPEAARVLLSWGCGANTLNGTQSS
                     ALHVAVQRGFLEVVRVLCECGCDVNLPDAHADTPLHCAISAGTGASGIVEVLTEVPGI
                     DVTATNSQGFTLLHHASLKGHTLAVRRILARARQLVDAKKEDGFTALHLAALNDHREV
                     AQVLIREGHCDVNVRNRKLQSPLHLAVQQAHVGLVPLLVDAGCSANAEDEEGDTALHV
                     ALQRHQLLPLATDGAGGDPGALQLLSRLQASGLPGSMELTVGAAVACFLALEGADLSY
                     ANHRGRSPLDLAAEGRLLKALQGCAQRFRERQAGGGGGAAQGPRLALSAPNTVTNLHV
                     AAPSGPEAAECLVCSELALLVLFSPCQHRMVCEECARRMKKCIRCQAVIVKKLRPDGT
                     EVVSAAPAPGPPRQLVEELQSRYRQMEERITCPICIDSHIRLVFQCGHGACAPCGAAL
                     SACPICRQPIRDRIQIFV"
     misc_feature    539..739
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    770..904
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(776..778,785..787,821..823,830..832,848..850,
                     857..859,875..877,887..889)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(776..778,785..787,848..850,857..859)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(779..781,812..814,818..820,836..838,842..844)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(815..817,860..862,893..895,902..904)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(821..823,830..832,875..877,887..889)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    983..1210
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1415..1606
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1772..2575
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1820..1822,1826..1828,1838..1843,1850..1858,
                     1862..1867,1877..1879,1886..1888,1913..1915,1919..1921,
                     1925..1927,1937..1942,1949..1957,1961..1966,1976..1978,
                     1985..1987,2012..2014,2018..2020,2024..2026,2036..2041,
                     2048..2056,2060..2065,2075..2077,2084..2086,2111..2113)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1820..1915
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1919..2014
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2018..2113
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2117..2221
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2228..2323
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2231..2233,2243..2248,2255..2263,2267..2272,
                     2282..2284,2291..2293,2321..2323,2327..2329,2333..2335,
                     2345..2350,2357..2365,2369..2374,2384..2386,2393..2395,
                     2423..2425,2429..2431,2435..2437,2447..2452,2459..2467,
                     2471..2476,2486..2488,2495..2497,2522..2524)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2327..2425
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2408..2758
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2429..2524
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2924..3037
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3149..3301
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3167..3169,3176..3178,3209..3211,3215..3217,
                     3224..3226,3233..3235,3254..3256,3263..3265)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 agcgggctgc ggactacaag tcccggcagg cctcgcggcg gccccagagc cccgagcgcc
       61 gggggcttcg ggcggccttg gccggtgggc tctggtgctg cgcggcgaag cggggcggcc
      121 tggctggttg gctgactctg agcagcctag ctcgctggcc ggccgccgca cacactgagg
      181 ccgcagtcgg ccggctgaca gactcggctc tcttcaggcc cccggagccc ccacgcgaag
      241 caggcgggac gcaaacttcg gggcaagtgg aggggtagac aagggcacca gggccgggga
      301 ctggcagcgg cgggggcccg gggcggcttc ccgaggaaga cttgctggct ggctacctgt
      361 ttggttcgct gtgttctgcg tcggcaatcg cttctagttt ccaacaggaa atcctggtgt
      421 ctgagcaaac ctgtgaccca cgaaagagca gctaagcatc cgggatgctg acgagaggct
      481 ggtgtgtgct gtaaggtctc ccaccatgga gccagacccc caggcgggcg tgcaggtggg
      541 catgcgcgtg gtacgcggcg tggactggaa gtggggccag caggacggcg gcgagggcgg
      601 cgtgggcacg gtggtggagc tcggccgcca cggcagccct tcgacccccg accgcacggt
      661 ggtcgtgcag tgggaccacg gcacgcgcac caactaccgc gcgggctacc agggcgcgca
      721 tgacctgctg ctctacgaca acgcccagat cggcgtccgc caccccaaca ttatctgcga
      781 ctgctgcaag aagcacgggc tgcggggcat gcgctggaag tgccgcgtct gcttcgacta
      841 cgatctctgc acgcagtgct acatgcacaa caggcacgac gtggcccacg ccttcgagcg
      901 ctacgagacg gcccactcgc gcccggtcac gctgagtccc cgccagggcc tcccaaggat
      961 cccgttaagg ggcatcttcc agggagcgaa ggtggttcgg ggccccgact gggagtgggg
     1021 ttcgcaggat ggcttagtct gctggtgggg ccactgtctc ccaggagggg aagggaagcc
     1081 aggccgagtg gtggacatcc gtggctggga tgtggagacg ggccggagcg tggccagcgt
     1141 gacatgggcc gacggcacca ccaacgtgta ccgcgtgggc cacaagggca aggtggacct
     1201 caagtgtgtg ggcgaggcag ctggcggctt ctactacagg gagcatctcc cgaggctcgg
     1261 caagcccgca gagctgcggc gcagggtgag cgccgacagc cagcccttcc agcacgggga
     1321 caaggtcaag tgtctgctgg acgcggacat cctgagggac atgcaggaag gccacggcgg
     1381 atggaacccc cggatggcca agcacaactc ctgctcggtg ggggaagtcg tgcgggtcat
     1441 cgacgacctc gacatggtga agcggctgca ggccgggcac ggcgagtgga cagatgacat
     1501 ggcccccgct ctgggccacg tcgggagagt gctcaaggtt ttcggagatg ggaacttggg
     1561 tgtgctggtc aatggtaagc tgtggacctt cagcccctcc tgcctggtgg cctaccggcc
     1621 tgaggaggac gccaacctgg acgtggccga gcgcgcccgg gagaacaaaa gctccctgag
     1681 tgtcgtcctg gacaagcttc gagcccagaa gagtgatctg gagcacccgg ggaggctggt
     1741 ggtggaggtg gccctgggca acgtggcccg ggctctggac ctgctgcggc ggcacccgga
     1801 gcaggtggac accaagaacc atggcaggac cgccctgcag gtggctgcct atctaggcca
     1861 ggtggagctg gtgcggctgc tgctgcaggc tcgggcgggc gtggacctgc cggacgacga
     1921 gggcagcacg gcactgcact acgcggcgct ggggaaccag ccagaggccg cccgggtgct
     1981 cctgagctgg ggttgcgggg ccaacactct taacggcacc cagagctcgg cgctgcacgt
     2041 ggccgtgcag aggggcttcc tggaggtggt gagggtcctc tgtgagtgcg gctgtgacgt
     2101 caacctgccc gacgcccatg ctgacacgcc cctgcactgc gccatctcgg cgggcactgg
     2161 cgccagcggc atcgtggagg tcctcaccga ggtgccgggt atcgacgtca ctgccacgaa
     2221 cagccaaggc ttcaccctgc tgcaccacgc atccctcaaa ggccacacac tagcagtcag
     2281 aaggattctg gcgcgggccc ggcagctggt ggacgccaag aaggaggatg ggttcacagc
     2341 gctgcacctg gccgccctga acgaccacag ggaggtggcc caggttctca tccgagaggg
     2401 ccattgtgac gtgaacgttc gcaaccggaa gctccagtcc ccgctgcacc tggctgtgca
     2461 gcaggcccac gtggggctgg tgccgctgct ggtggacgct ggctgcagcg ccaatgccga
     2521 ggacgaggag ggggacacgg ctctgcatgt ggcactgcag cggcaccagc tgctgcccct
     2581 ggcgactgat ggggccgggg gggacccagg ggccttgcag ctgctgtcaa ggctacaggc
     2641 ctcgggcctt ccgggcagca tggagctgac ggtgggcgcg gcggtcgcct gcttcttggc
     2701 gctggagggc gccgacctga gctatgccaa ccaccgcggc cggagcccgc tggacctggc
     2761 agctgagggc cgcctgctca aagccctgca gggctgtgcc cagcgcttcc gggagcggca
     2821 ggctggcggc ggcgggggcg cggcccaggg cccaaggctg gcgctcagtg cccccaacac
     2881 tgttaccaac ctgcacgtcg ctgcgccgtc cgggcccgag gccgccgagt gcctggtgtg
     2941 ttcggagctg gcgctgttgg tgctgttctc gccttgccag caccgcatgg tgtgtgagga
     3001 gtgcgcccgc aggatgaaga agtgcatcag gtgccaggcg gtcatcgtca agaagctgcg
     3061 cccagacggc acggaggtgg tcagcgccgc ccccgccccc ggcccaccgc ggcagctggt
     3121 ggaggagctg cagagccgct accggcagat ggaggagcgc atcacctgcc ccatctgcat
     3181 cgacagccac atccgcctcg tgttccagtg cggtcacggc gcctgcgcgc cctgcggcgc
     3241 tgcgctcagc gcctgcccca tctgccgcca gcccatccgc gaccgcatcc agatcttcgt
     3301 gtagcccgcg ccccctgcct cgtccggggc cacgccccgc gaccgccttc gcaggctcct
     3361 actctgtatt ttataaaaag attaatggac
//
LOCUS       XM_032650916            3279 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X10, mRNA.
ACCESSION   XM_032650916
VERSION     XM_032650916.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3279
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3279
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763299"
     CDS             428..3193
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X8"
                     /protein_id="XP_032506807.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGGEGKPGRVVDIRGWDVETGRSVASVTWADGTTNVYRVGHKGK
                     VDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKCLLDADILRDMQ
                     EGHGGWNPRMAKHNSCSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKV
                     FGDGNLGVLVNGKLWTFSPSCLVAYRPEEDANLDVAERARENKSSLSVVLDKLRAQKS
                     DLEHPGRLVVEVALGNVARALDLLRRHPEQVDTKNHGRTALQVAAYLGQVELVRLLLQ
                     ARAGVDLPDDEGSTALHYAALGNQPEAARVLLSWGCGANTLNGTQSSALHVAVQRGFL
                     EVVRVLCECGCDVNLPDAHADTPLHCAISAGTGASGIVEVLTEVPGIDVTATNSQGFT
                     LLHHASLKGHTLAVRRILARARQLVDAKKEDGFTALHLAALNDHREVAQVLIREGHCD
                     VNVRNRKLQSPLHLAVQQAHVGLVPLLVDAGCSANAEDEEGDTALHVALQRHQLLPLA
                     TDGAGGDPGALQLLSRLQASGLPGSMELTVGAAVACFLALEGADLSYANHRGRSPLDL
                     AAEGRLLKALQGCAQRFRERQAGGGGGAAQGPRLALSAPNTVTNLHVAAPSGPEAAEC
                     LVCSELALLVLFSPCQHRMVCEECARRMKKCIRCQAVIVKKLRPDGTEVVSAAPAPGP
                     PRQLVEELQSRYRQMEERITCPICIDSHIRLVFQCGHGACAPCGAALSACPICRQPIR
                     DRIQIFV"
     misc_feature    461..661
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    692..826
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(698..700,707..709,743..745,752..754,770..772,
                     779..781,797..799,809..811)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(698..700,707..709,770..772,779..781)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(701..703,734..736,740..742,758..760,764..766)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(737..739,782..784,815..817,824..826)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(743..745,752..754,797..799,809..811)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    905..1099
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1304..1495
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1661..2464
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1709..1711,1715..1717,1727..1732,1739..1747,
                     1751..1756,1766..1768,1775..1777,1802..1804,1808..1810,
                     1814..1816,1826..1831,1838..1846,1850..1855,1865..1867,
                     1874..1876,1901..1903,1907..1909,1913..1915,1925..1930,
                     1937..1945,1949..1954,1964..1966,1973..1975,2000..2002)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1709..1804
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1808..1903
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1907..2002
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2006..2110
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2117..2212
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2120..2122,2132..2137,2144..2152,2156..2161,
                     2171..2173,2180..2182,2210..2212,2216..2218,2222..2224,
                     2234..2239,2246..2254,2258..2263,2273..2275,2282..2284,
                     2312..2314,2318..2320,2324..2326,2336..2341,2348..2356,
                     2360..2365,2375..2377,2384..2386,2411..2413)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2216..2314
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <2297..2647
                     /gene="MIB2"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    2318..2413
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2813..2926
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    3038..3190
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(3056..3058,3065..3067,3098..3100,3104..3106,
                     3113..3115,3122..3124,3143..3145,3152..3154)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 gcgggctgcg gactacaagt cccggcaggc ctcgcggcgg ccccagagcc ccgagcgccg
       61 ggggcttcgg gcggccttgg ccggtgggct ctggtgctgc gcggcgaagc ggggcggcct
      121 ggctggttgg ctgactctga gcagcctagc tcgctggccg gccgccgcac acactgaggc
      181 cgcagtcggc cggctgacag actcggctct cttcaggccc ccggagcccc cacgcgaagc
      241 aggcgggacg caaacttcgg gacttgctgg ctggctacct gtttggttcg ctgtgttctg
      301 cgtcggcaat cgcttctagt ttccaacagg aaatcctggt gtctgagcaa acctgtgacc
      361 cacgaaagag cagctaagca tccgggatgc tgacgagagg ctggtgtgtg ctgtaaggtc
      421 tcccaccatg gagccagacc cccaggcggg cgtgcaggtg ggcatgcgcg tggtacgcgg
      481 cgtggactgg aagtggggcc agcaggacgg cggcgagggc ggcgtgggca cggtggtgga
      541 gctcggccgc cacggcagcc cttcgacccc cgaccgcacg gtggtcgtgc agtgggacca
      601 cggcacgcgc accaactacc gcgcgggcta ccagggcgcg catgacctgc tgctctacga
      661 caacgcccag atcggcgtcc gccaccccaa cattatctgc gactgctgca agaagcacgg
      721 gctgcggggc atgcgctgga agtgccgcgt ctgcttcgac tacgatctct gcacgcagtg
      781 ctacatgcac aacaggcacg acgtggccca cgccttcgag cgctacgaga cggcccactc
      841 gcgcccggtc acgctgagtc cccgccaggg cctcccaagg atcccgttaa ggggcatctt
      901 ccagggagcg aaggtggttc ggggccccga ctgggagtgg ggttcgcagg atggagggga
      961 agggaagcca ggccgagtgg tggacatccg tggctgggat gtggagacgg gccggagcgt
     1021 ggccagcgtg acatgggccg acggcaccac caacgtgtac cgcgtgggcc acaagggcaa
     1081 ggtggacctc aagtgtgtgg gcgaggcagc tggcggcttc tactacaggg agcatctccc
     1141 gaggctcggc aagcccgcag agctgcggcg cagggtgagc gccgacagcc agcccttcca
     1201 gcacggggac aaggtcaagt gtctgctgga cgcggacatc ctgagggaca tgcaggaagg
     1261 ccacggcgga tggaaccccc ggatggccaa gcacaactcc tgctcggtgg gggaagtcgt
     1321 gcgggtcatc gacgacctcg acatggtgaa gcggctgcag gccgggcacg gcgagtggac
     1381 agatgacatg gcccccgctc tgggccacgt cgggagagtg ctcaaggttt tcggagatgg
     1441 gaacttgggt gtgctggtca atggtaagct gtggaccttc agcccctcct gcctggtggc
     1501 ctaccggcct gaggaggacg ccaacctgga cgtggccgag cgcgcccggg agaacaaaag
     1561 ctccctgagt gtcgtcctgg acaagcttcg agcccagaag agtgatctgg agcacccggg
     1621 gaggctggtg gtggaggtgg ccctgggcaa cgtggcccgg gctctggacc tgctgcggcg
     1681 gcacccggag caggtggaca ccaagaacca tggcaggacc gccctgcagg tggctgccta
     1741 tctaggccag gtggagctgg tgcggctgct gctgcaggct cgggcgggcg tggacctgcc
     1801 ggacgacgag ggcagcacgg cactgcacta cgcggcgctg gggaaccagc cagaggccgc
     1861 ccgggtgctc ctgagctggg gttgcggggc caacactctt aacggcaccc agagctcggc
     1921 gctgcacgtg gccgtgcaga ggggcttcct ggaggtggtg agggtcctct gtgagtgcgg
     1981 ctgtgacgtc aacctgcccg acgcccatgc tgacacgccc ctgcactgcg ccatctcggc
     2041 gggcactggc gccagcggca tcgtggaggt cctcaccgag gtgccgggta tcgacgtcac
     2101 tgccacgaac agccaaggct tcaccctgct gcaccacgca tccctcaaag gccacacact
     2161 agcagtcaga aggattctgg cgcgggcccg gcagctggtg gacgccaaga aggaggatgg
     2221 gttcacagcg ctgcacctgg ccgccctgaa cgaccacagg gaggtggccc aggttctcat
     2281 ccgagagggc cattgtgacg tgaacgttcg caaccggaag ctccagtccc cgctgcacct
     2341 ggctgtgcag caggcccacg tggggctggt gccgctgctg gtggacgctg gctgcagcgc
     2401 caatgccgag gacgaggagg gggacacggc tctgcatgtg gcactgcagc ggcaccagct
     2461 gctgcccctg gcgactgatg gggccggggg ggacccaggg gccttgcagc tgctgtcaag
     2521 gctacaggcc tcgggccttc cgggcagcat ggagctgacg gtgggcgcgg cggtcgcctg
     2581 cttcttggcg ctggagggcg ccgacctgag ctatgccaac caccgcggcc ggagcccgct
     2641 ggacctggca gctgagggcc gcctgctcaa agccctgcag ggctgtgccc agcgcttccg
     2701 ggagcggcag gctggcggcg gcgggggcgc ggcccagggc ccaaggctgg cgctcagtgc
     2761 ccccaacact gttaccaacc tgcacgtcgc tgcgccgtcc gggcccgagg ccgccgagtg
     2821 cctggtgtgt tcggagctgg cgctgttggt gctgttctcg ccttgccagc accgcatggt
     2881 gtgtgaggag tgcgcccgca ggatgaagaa gtgcatcagg tgccaggcgg tcatcgtcaa
     2941 gaagctgcgc ccagacggca cggaggtggt cagcgccgcc cccgcccccg gcccaccgcg
     3001 gcagctggtg gaggagctgc agagccgcta ccggcagatg gaggagcgca tcacctgccc
     3061 catctgcatc gacagccaca tccgcctcgt gttccagtgc ggtcacggcg cctgcgcgcc
     3121 ctgcggcgct gcgctcagcg cctgccccat ctgccgccag cccatccgcg accgcatcca
     3181 gatcttcgtg tagcccgcgc cccctgcctc gtccggggcc acgccccgcg accgccttcg
     3241 caggctccta ctctgtattt tataaaaaga ttaatggac
//
LOCUS       XM_032650925            2992 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mindbomb E3 ubiquitin protein ligase 2
            (MIB2), transcript variant X11, mRNA.
ACCESSION   XM_032650925
VERSION     XM_032650925.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2992
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2992
                     /gene="MIB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763299"
     CDS             429..2906
                     /gene="MIB2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MIB2 isoform X9"
                     /protein_id="XP_032506816.1"
                     /db_xref="GeneID:116763299"
                     /translation="MEPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGS
                     PSTPDRTVVVQWDHGTRTNYRAGYQGAHDLLLYDNAQIGVRHPNIICDCCKKHGLRGM
                     RWKCRVCFDYDLCTQCYMHNRHDVAHAFERYETAHSRPVTLSPRQGLPRIPLRGIFQG
                     AKVVRGPDWEWGSQDGGEGKPGRVVDIRGWDVETGRSVASVTWADGTTNVYRVGHKGK
                     VDLKCVGEAAGGFYYREHLPRLGKPAELRRRVSADSQPFQHGDKVKCLLDADILRDMQ
                     EGHGGWNPRMAKHNSCSVGEVVRVIDDLDMVKRLQAGHGEWTDDMAPALGHVGRVLKV
                     FGDGNLGVLVNGKLWTFSPSCLVAYRPEEDANLDVAERARENKSSLSVVLDKLRAQKS
                     DLEHPGRLVVEVALGNVARALDLLRRHPEQVDTKNHGRTALQVAAYLGQVELVRLLLQ
                     ARAGVDLPDDEGSTALHYAALGNQPEAARVLLSWGCGANTLNGTQSSALHVAVQRGFL
                     EVVRVLCECGCDVNLPDAHADTPLHCAISAGTGASGIVEVLTEVPGIDVTATNSQGFT
                     LLHHASLKGHTLAVRRILARARQLVDAKKEDGFTALHLAALNDHREVAQVLIREGHCD
                     VNVRNRKLQSPLHLAVQQAHVGLVPLLVDAGCSANAEDEEGDTALHVALQRHQLLPLA
                     TDGAGGDPGALQLLSRAAECLVCSELALLVLFSPCQHRMVCEECARRMKKCIRCQAVI
                     VKKLRPDGTEVVSAAPAPGPPRQLVEELQSRYRQMEERITCPICIDSHIRLVFQCGHG
                     ACAPCGAALSACPICRQPIRDRIQIFV"
     misc_feature    462..662
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    693..827
                     /gene="MIB2"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     Drosophila Mind bomb (D-mib) and related proteins. The ZZ
                     motif coordinates two zinc ions and most likely
                     participates in ligand binding or molecular scaffolding.
                     Mind bomb is an E3 ubiqitin ligase that has...; Region:
                     ZZ_Mind_bomb; cd02339"
                     /db_xref="CDD:239079"
     misc_feature    order(699..701,708..710,744..746,753..755,771..773,
                     780..782,798..800,810..812)
                     /gene="MIB2"
                     /note="Zinc-binding sites [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(699..701,708..710,771..773,780..782)
                     /gene="MIB2"
                     /note="zinc cluster 1 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    order(702..704,735..737,741..743,759..761,765..767)
                     /gene="MIB2"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(738..740,783..785,816..818,825..827)
                     /gene="MIB2"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239079"
     misc_feature    order(744..746,753..755,798..800,810..812)
                     /gene="MIB2"
                     /note="zinc cluster 2 [ion binding]; other site"
                     /db_xref="CDD:239079"
     misc_feature    906..1100
                     /gene="MIB2"
                     /note="Mib_herc2; Region: MIB_HERC2; pfam06701"
                     /db_xref="CDD:461991"
     misc_feature    1305..1496
                     /gene="MIB2"
                     /note="Mind bomb SH3 repeat domain; Region: SH3_15;
                     pfam18346"
                     /db_xref="CDD:465720"
     misc_feature    1662..2465
                     /gene="MIB2"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1710..1712,1716..1718,1728..1733,1740..1748,
                     1752..1757,1767..1769,1776..1778,1803..1805,1809..1811,
                     1815..1817,1827..1832,1839..1847,1851..1856,1866..1868,
                     1875..1877,1902..1904,1908..1910,1914..1916,1926..1931,
                     1938..1946,1950..1955,1965..1967,1974..1976,2001..2003)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1710..1805
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1809..1904
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1908..2003
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2007..2111
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2118..2213
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2121..2123,2133..2138,2145..2153,2157..2162,
                     2172..2174,2181..2183,2211..2213,2217..2219,2223..2225,
                     2235..2240,2247..2255,2259..2264,2274..2276,2283..2285,
                     2313..2315,2319..2321,2325..2327,2337..2342,2349..2357,
                     2361..2366,2376..2378,2385..2387,2412..2414)
                     /gene="MIB2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2217..2315
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2319..2414
                     /gene="MIB2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2526..2639
                     /gene="MIB2"
                     /note="first RING finger, HC subclass, found in mind bomb
                     2 (MIB2) and similar proteins; Region: RING-HC_MIB2_rpt1;
                     cd16726"
                     /db_xref="CDD:438386"
     misc_feature    2751..2903
                     /gene="MIB2"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(2769..2771,2778..2780,2811..2813,2817..2819,
                     2826..2828,2835..2837,2856..2858,2865..2867)
                     /gene="MIB2"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438388"
ORIGIN      
        1 agcgggctgc ggactacaag tcccggcagg cctcgcggcg gccccagagc cccgagcgcc
       61 gggggcttcg ggcggccttg gccggtgggc tctggtgctg cgcggcgaag cggggcggcc
      121 tggctggttg gctgactctg agcagcctag ctcgctggcc ggccgccgca cacactgagg
      181 ccgcagtcgg ccggctgaca gactcggctc tcttcaggcc cccggagccc ccacgcgaag
      241 caggcgggac gcaaacttcg ggacttgctg gctggctacc tgtttggttc gctgtgttct
      301 gcgtcggcaa tcgcttctag tttccaacag gaaatcctgg tgtctgagca aacctgtgac
      361 ccacgaaaga gcagctaagc atccgggatg ctgacgagag gctggtgtgt gctgtaaggt
      421 ctcccaccat ggagccagac ccccaggcgg gcgtgcaggt gggcatgcgc gtggtacgcg
      481 gcgtggactg gaagtggggc cagcaggacg gcggcgaggg cggcgtgggc acggtggtgg
      541 agctcggccg ccacggcagc ccttcgaccc ccgaccgcac ggtggtcgtg cagtgggacc
      601 acggcacgcg caccaactac cgcgcgggct accagggcgc gcatgacctg ctgctctacg
      661 acaacgccca gatcggcgtc cgccacccca acattatctg cgactgctgc aagaagcacg
      721 ggctgcgggg catgcgctgg aagtgccgcg tctgcttcga ctacgatctc tgcacgcagt
      781 gctacatgca caacaggcac gacgtggccc acgccttcga gcgctacgag acggcccact
      841 cgcgcccggt cacgctgagt ccccgccagg gcctcccaag gatcccgtta aggggcatct
      901 tccagggagc gaaggtggtt cggggccccg actgggagtg gggttcgcag gatggagggg
      961 aagggaagcc aggccgagtg gtggacatcc gtggctggga tgtggagacg ggccggagcg
     1021 tggccagcgt gacatgggcc gacggcacca ccaacgtgta ccgcgtgggc cacaagggca
     1081 aggtggacct caagtgtgtg ggcgaggcag ctggcggctt ctactacagg gagcatctcc
     1141 cgaggctcgg caagcccgca gagctgcggc gcagggtgag cgccgacagc cagcccttcc
     1201 agcacgggga caaggtcaag tgtctgctgg acgcggacat cctgagggac atgcaggaag
     1261 gccacggcgg atggaacccc cggatggcca agcacaactc ctgctcggtg ggggaagtcg
     1321 tgcgggtcat cgacgacctc gacatggtga agcggctgca ggccgggcac ggcgagtgga
     1381 cagatgacat ggcccccgct ctgggccacg tcgggagagt gctcaaggtt ttcggagatg
     1441 ggaacttggg tgtgctggtc aatggtaagc tgtggacctt cagcccctcc tgcctggtgg
     1501 cctaccggcc tgaggaggac gccaacctgg acgtggccga gcgcgcccgg gagaacaaaa
     1561 gctccctgag tgtcgtcctg gacaagcttc gagcccagaa gagtgatctg gagcacccgg
     1621 ggaggctggt ggtggaggtg gccctgggca acgtggcccg ggctctggac ctgctgcggc
     1681 ggcacccgga gcaggtggac accaagaacc atggcaggac cgccctgcag gtggctgcct
     1741 atctaggcca ggtggagctg gtgcggctgc tgctgcaggc tcgggcgggc gtggacctgc
     1801 cggacgacga gggcagcacg gcactgcact acgcggcgct ggggaaccag ccagaggccg
     1861 cccgggtgct cctgagctgg ggttgcgggg ccaacactct taacggcacc cagagctcgg
     1921 cgctgcacgt ggccgtgcag aggggcttcc tggaggtggt gagggtcctc tgtgagtgcg
     1981 gctgtgacgt caacctgccc gacgcccatg ctgacacgcc cctgcactgc gccatctcgg
     2041 cgggcactgg cgccagcggc atcgtggagg tcctcaccga ggtgccgggt atcgacgtca
     2101 ctgccacgaa cagccaaggc ttcaccctgc tgcaccacgc atccctcaaa ggccacacac
     2161 tagcagtcag aaggattctg gcgcgggccc ggcagctggt ggacgccaag aaggaggatg
     2221 ggttcacagc gctgcacctg gccgccctga acgaccacag ggaggtggcc caggttctca
     2281 tccgagaggg ccattgtgac gtgaacgttc gcaaccggaa gctccagtcc ccgctgcacc
     2341 tggctgtgca gcaggcccac gtggggctgg tgccgctgct ggtggacgct ggctgcagcg
     2401 ccaatgccga ggacgaggag ggggacacgg ctctgcatgt ggcactgcag cggcaccagc
     2461 tgctgcccct ggcgactgat ggggccgggg gggacccagg ggccttgcag ctgctgtcaa
     2521 gggccgccga gtgcctggtg tgttcggagc tggcgctgtt ggtgctgttc tcgccttgcc
     2581 agcaccgcat ggtgtgtgag gagtgcgccc gcaggatgaa gaagtgcatc aggtgccagg
     2641 cggtcatcgt caagaagctg cgcccagacg gcacggaggt ggtcagcgcc gcccccgccc
     2701 ccggcccacc gcggcagctg gtggaggagc tgcagagccg ctaccggcag atggaggagc
     2761 gcatcacctg ccccatctgc atcgacagcc acatccgcct cgtgttccag tgcggtcacg
     2821 gcgcctgcgc gccctgcggc gctgcgctca gcgcctgccc catctgccgc cagcccatcc
     2881 gcgaccgcat ccagatcttc gtgtagcccg cgccccctgc ctcgtccggg gccacgcccc
     2941 gcgaccgcct tcgcaggctc ctactctgta ttttataaaa agattaatgg ac
//
LOCUS       XR_004352494             254 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763356
            (LOC116763356), ncRNA.
ACCESSION   XR_004352494
VERSION     XR_004352494.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..254
                     /gene="LOC116763356"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116763356"
     ncRNA           1..254
                     /ncRNA_class="lncRNA"
                     /gene="LOC116763356"
                     /product="uncharacterized LOC116763356"
                     /db_xref="GeneID:116763356"
ORIGIN      
        1 ctagaatatg gaagctgtgt gctaaagatc gtggggcatg cagaaaggaa gaacctagaa
       61 acttaattat caaggagcca ccacaagtcc tgaactgctt aattctgcac ttctttattt
      121 tgaggaagag aagtctggaa cacagatgtg gttaataaag ccagcctcga ccatgccaac
      181 aatgaccaca ctgctggagc agtacgcagg cctcccactg ctgtggcctc tcccgctgcg
      241 gagcacaggt tccg
//
LOCUS       XM_032650944            4173 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dispatched RND transporter family member
            3 (DISP3), mRNA.
ACCESSION   XM_032650944
VERSION     XM_032650944.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1096              VOSU01000011.1     8954410-8955505
            1097-1245           VOSU01000011.1     8956446-8956594
            1246-1316           VOSU01000011.1     8956597-8956667
            1317-1453           VOSU01000011.1     8964014-8964150
            1454-1588           VOSU01000011.1     8965060-8965194
            1589-1749           VOSU01000011.1     8965624-8965784
            1750-1889           VOSU01000011.1     8967243-8967382
            1890-2038           VOSU01000011.1     8969036-8969184
            2039-2200           VOSU01000011.1     8969413-8969574
            2201-2362           VOSU01000011.1     8970486-8970647
            2363-2470           VOSU01000011.1     8972569-8972676
            2471-2607           VOSU01000011.1     8973705-8973841
            2608-2792           VOSU01000011.1     8975004-8975188
            2793-2923           VOSU01000011.1     8976995-8977125
            2924-3096           VOSU01000011.1     8977203-8977375
            3097-3223           VOSU01000011.1     8978354-8978480
            3224-3369           VOSU01000011.1     8979002-8979147
            3370-3529           VOSU01000011.1     8981103-8981262
            3530-3643           VOSU01000011.1     8981821-8981934
            3644-3810           VOSU01000011.1     8982363-8982529
            3811-4173           VOSU01000011.1     8983431-8983793
FEATURES             Location/Qualifiers
     source          1..4173
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4173
                     /gene="DISP3"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 8% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763360"
     CDS             1..4173
                     /gene="DISP3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein dispatched homolog
                     3"
                     /protein_id="XP_032506835.1"
                     /db_xref="GeneID:116763360"
                     /translation="MDSEDDPLLQDVWLEEAQEEEEEATGEAFRRAQKPGPQAGAGGQ
                     CCWWHWTLPSRPPASGFWNTLGWAFTNPCCAGLVLFLGCSIPMALSAFMFLYYPPLDI
                     DISYNAFEIRNHEASQRFDALALALKSQFGSWGRNRRDLADFTSETLQRLITEQLQQL
                     HPGNRSRPAARAPYQVPAALKLGPGLWDTSTAQKPAANRSGRLRRATPPLGSLAANQS
                     ETQVNQGLDRNGRRQPSAPPPTAAAANQSRSRRGASRWDYSHSYVSANTQTHAHWRIE
                     LIFLARGDAERNIFTSERLVTIHEIERKIMDHPGFREFCWKPHEVLKDLPLGSYSYCS
                     PPSSLMTYFFPTERGGKIYYDGMGQDLADIRGSLELAMTHPEFYWYVDEGLSAENLKS
                     SLLRSEILLAHPLPSYHSVDDRWEEQRAKFQSFVVTYVAMLAKQSTSKVQVLYGGTDL
                     FDYEVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIASIGLSCLVALFLYHV
                     VFGIQYLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDPQLRMIHTIQTAGKATF
                     FTSLTTAAAYAANVFSQIPAVHDFGLFMSLIVSCCWLAVLFTMPAALGIWSLYMAPLE
                     SACQTSCHQKCGCRSSLHFPGDVFAAAEWAGGSPAQGPMPYLDDDIPLLNVEEEPVSL
                     ELGDASLVSVPPKGLQPAPDGGSRGQLIAQLQELLHHWVLWSAVKSRWVIVGLFVSIL
                     ILSLVFASRLRPASRAPLLFRPDTNIQVLLDLKYNLSAEGISCITCSGLFQEKPHSLQ
                     NIRTSLEKKRGSEVSWAGRPEAALQDSPGTVYVSKVKSKGHPAVYRFSLNASLPGPWQ
                     TVSSGDGEVPSFQVYRAPFGNFTKKLTACMSTVGLLQAASPSGRWMVTTLACDTKRGW
                     KFDFSFYVAAKEHQHTRKLYFAQSHKPPFHGRVCAAPPGCLLGSSPDGPTKGFFYVPS
                     EKAPKARPSATFGFNPCVNTGCGKPAVRPLVDTGAMVFVVFGIVGINRTRQVDNHVIG
                     DPGSVIYDSSFDLFKEIGHLCRLCKAIAGNSELVKPGGAQCLPSGYSISSFLQMLHPE
                     CKQLPEPHLLPGQLSHGAVGVKDGRVQWVSMAFESTTYKGKSSFQTYSDYLRWESFLQ
                     QQLKMLPEGSALHRGFQTCEHWKRIFMEIIGVQSALYGLALSLLICVAAVTVFTTHVL
                     LLLPVLLSILGSVCLVVTVMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYLLAGE
                     NLPPHQAEDAHSQRQWRTLEAVRHVGVAIVSSALTTVIATVPLFFCIIAPFAKFGKIV
                     ALNTGVSILYTLTVSTALLGIMAPGSFTRTRTSFLKALGAVLLAGALGLGACLLLLQS
                     GYKIPLPDGTSL"
     misc_feature    <1153..>2253
                     /gene="DISP3"
                     /note="The Eukaryotic (Putative) Sterol Transporter (EST)
                     Family; Region: 2A060602; TIGR00918"
                     /db_xref="CDD:273338"
     misc_feature    <1291..>1839
                     /gene="DISP3"
                     /note="Predicted exporter protein, RND superfamily
                     [General function prediction only]; Region: MMPL; COG1033"
                     /db_xref="CDD:440656"
     misc_feature    <3553..>4026
                     /gene="DISP3"
                     /note="Predicted exporter protein, RND superfamily
                     [General function prediction only]; Region: MMPL; COG1033"
                     /db_xref="CDD:440656"
ORIGIN      
        1 atggactcgg aggatgaccc cttgctgcag gatgtgtggc tagaggaggc gcaggaagag
       61 gaggaggaag caacgggtga ggcctttagg agggcccaga agccggggcc ccaagctggg
      121 gcaggggggc agtgttgctg gtggcactgg accttgccct cccggccccc agcgtcaggc
      181 ttctggaata cactgggctg ggccttcacc aatccgtgct gtgcggggct ggtgctcttc
      241 ctcggctgca gcatccccat ggctctttca gccttcatgt tcctctacta cccgccgctg
      301 gacattgaca tctcctacaa tgcctttgag atccgcaacc atgaggcctc ccagcgtttc
      361 gacgccctcg cgctggcgct caaatcccag tttgggtcct gggggcgcaa ccggcgcgac
      421 ctggccgact tcacttctga gacgctccaa cgcctcatca cagagcagtt gcagcagcta
      481 catccaggca atcgctcgcg gccggccgcc cgggccccgt accaggtccc tgccgcgctg
      541 aagcttggcc caggactgtg ggacacctcc accgctcaga agccagcagc caatcggagc
      601 gggcgtcttc ggcgagcgac tccacccctg gggagcctgg cagccaacca gagtgaaacc
      661 caggtgaacc aggggctgga caggaatggg cggcgccaac ccagcgcccc tccccccaca
      721 gcggctgcgg ccaatcagag ccgttcccgc cgcggcgcct cgcgttggga ctactcacac
      781 tcctatgtga gcgccaacac ccagacgcac gctcactggc gcatcgagct cattttcctg
      841 gcacgtggcg acgcagagcg caacattttc acgagtgagc ggctggtcac aatccacgag
      901 attgagcgca agatcatgga ccacccgggc ttccgggagt tctgctggaa gccccatgaa
      961 gtgctgaaag acctgccgct cggctcctac tcttactgct ccccgcccag ctcgctcatg
     1021 acctacttct tccccactga gaggggtggc aagatttact atgatggcat gggccaggac
     1081 ctggccgaca tccggggctc cctagagctg gccatgactc acccggagtt ctactggtat
     1141 gtggacgaag gcctctctgc agaaaacctc aagagctccc tcctgcgcag cgagatcctc
     1201 ttggcgcacc ccctgcccag ctaccactcg gtggatgatc gctgggagga gcagcgggct
     1261 aagtttcaga gctttgtggt cacctatgtg gccatgctgg ccaagcagtc cactagcaaa
     1321 gtgcaggttc tgtatggggg gacggacctc tttgattacg aggttcgcag aaccttcaac
     1381 aatgacatgc tcctggcctt catcagcagc agctgcattg ccgccctcgt ctacattctc
     1441 acctcctgct cagtgttcct gtccttcttc ggaattgcca gcatcggcct cagttgcctg
     1501 gtggcactct tcctgtacca tgtggtcttt ggtatccagt acctgggcat cctcaatggg
     1561 gtggctgcct tcgtgatagt gggcattggc gtggacgacg tctttgtatt catcaacacc
     1621 taccgccagg ccacccacct ggaagacccg cagctgcgga tgatccatac catccagacg
     1681 gcgggcaagg ccaccttctt cacctccctg accacggctg ccgcctatgc agctaacgtc
     1741 ttctcccaga tcccggccgt ccacgacttt ggcctgttca tgtctctcat cgtgtcctgc
     1801 tgctggctgg ctgtgctctt caccatgcct gctgccctgg gcatctggag cctttatatg
     1861 gcaccgctgg agagcgcctg ccagaccagc tgccaccaga agtgtggctg caggagctcc
     1921 ctgcacttcc ccggggacgt gtttgctgct gctgagtggg ctgggggcag ccctgctcag
     1981 ggccccatgc cctacctgga tgatgacatc cccttgctca atgtggagga ggagccagtg
     2041 tcgctggagc tgggagacgc gtccctggtg tctgtgcccc ccaagggcct gcagccagcc
     2101 cccgatgggg gcagccgggg gcagctcatc gcccagctgc aggagctgct gcaccactgg
     2161 gtcctgtggt cggccgtcaa gagccgttgg gtgattgtgg ggctctttgt ctccatcctc
     2221 atcctgtccc tggtgttcgc cagccggctc cgccccgcca gccgggcccc gctgctcttc
     2281 cggccggata ccaacatcca ggtgctgcta gacctcaagt acaacttgag cgccgagggc
     2341 atctcctgca tcacctgttc aggtctgttc caggagaagc cccacagcct gcagaacatc
     2401 cggacgtccc tggagaagaa gcggggctcg gaggtgtcct gggccggccg gcctgaggcc
     2461 gccctacagg actccccggg cactgtgtac gtctccaagg tgaagagcaa aggccacccg
     2521 gctgtctaca ggttctccct caacgccagc ctgcctggcc cttggcagac cgtgtcctct
     2581 ggggacgggg aggtgccctc cttccaggtg tatagagcgc cttttggtaa cttcaccaag
     2641 aagctgaccg cttgtatgtc tacagtaggg ctgctccagg cggcgagccc ctccggcagg
     2701 tggatggtga cgaccttggc ctgcgacacc aagcggggct ggaagtttga ctttagcttc
     2761 tacgtggccg ccaaggagca ccagcacacc cggaaactgt actttgccca gtcccacaag
     2821 ccccctttcc acgggcgtgt gtgtgcggcc cctcctggct gcctgctcgg ctccagcccc
     2881 gatgggccga ccaaaggctt cttctacgtg cccagcgaga aagcgcccaa ggcccgcccc
     2941 tctgccacct tcggcttcaa cccctgcgtg aacacgggct gcgggaagcc ggcggtgcgg
     3001 ccgctcgtgg acacaggggc catggtcttc gtagtctttg gcatcgttgg catcaaccgc
     3061 acacggcagg tggacaacca tgtcatcgga gacccgggca gcgtcatcta cgacagcagc
     3121 tttgacctct tcaaagaaat cgggcacctg tgtcgcctct gcaaggccat cgcggggaac
     3181 tcagagctgg tgaagccggg tggggcccag tgcctgccct caggctacag catctcctcc
     3241 ttcctgcaga tgttgcaccc cgagtgcaag cagctgcctg agccccacct gctcccaggg
     3301 cagctgtcac acggggccgt gggcgtcaag gatggccgag tgcagtgggt ctccatggcc
     3361 ttcgagtcga ccacgtacaa gggcaagtcc tccttccaga cctactcgga ctacctgcgc
     3421 tgggagagct tcctgcagca gcagctgaag atgctccccg agggctcagc cctgcaccgc
     3481 ggcttccaga cgtgtgagca ctggaagcgg atcttcatgg agatcatagg ggtgcagagc
     3541 gccctgtacg gcctggccct ctccttgctc atctgcgtgg ctgcggtgac cgtgttcacc
     3601 acccacgtgc tgctcctgtt gcccgtactc ctgagcatcc tgggcagcgt ctgcctcgtg
     3661 gtgaccgtca tgtactggag cggctgggag atgggcgccg tggaagccat ctccctgtcc
     3721 atcctcgtcg gctcctccgt ggattactgc gtgcatctgg tcgagggcta tctgctggcc
     3781 ggagagaacc tgcccccgca ccaggccgag gatgcccact cgcagcgcca gtggcggacg
     3841 ctggaggctg tgcggcatgt gggcgtggcc atcgtctcca gcgccctcac cacagtcatc
     3901 gccacggtgc ccctcttctt ctgcatcatc gccccgtttg ccaagtttgg caagatcgtc
     3961 gcactcaaca ctggagtctc catcctctac acgctcacgg tcagcacagc cctgctcggc
     4021 atcatggcgc ccggctcctt cacccggacc aggacttcct tcctcaaagc cctgggtgcc
     4081 gtgctcctgg caggggccct ggggctgggc gcctgcctgc tgctcctcca gagcggctat
     4141 aagatccccc tgcccgatgg gacctccctg tag
//
LOCUS       XM_032650958            8671 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus VANGL planar cell polarity protein 1
            (VANGL1), transcript variant X1, mRNA.
ACCESSION   XM_032650958
VERSION     XM_032650958.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8671
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8671
                     /gene="VANGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 15
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763365"
     CDS             274..1848
                     /gene="VANGL1"
                     /codon_start=1
                     /product="vang-like protein 1"
                     /protein_id="XP_032506849.1"
                     /db_xref="GeneID:116763365"
                     /translation="MDTESTYSGYSYYSSHSKKSHRQGERNRERHKSPRNKDGRGSEK
                     SVTIQAPTGEPLLANDSTRTEEAQDDNWGETTTAITGTSEHSISQEDIARISKDMEDS
                     VGLDCRRYLGLTVATVLGLLVFLTPIAFILLPPILWREELEPCGTICEGLFISMAFKL
                     LILLIGTWALFFRKQRADVPRIFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQG
                     IVQYAVSLVDALLFIHYLAVVLLELRQLQPMFTLQVVRSTDGESRFYSFGHLSIQRAA
                     LVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAAR
                     RRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPRE
                     AAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLERYLSTGPT
                     LQYDRERWLAMQWRLVSDEAVTSGLRDGLVFVLKCLDFSLVVNVKKIPFIMLSEEFID
                     PKSHKFVLRLQSETSV"
     misc_feature    346..1845
                     /gene="VANGL1"
                     /note="Strabismus protein; Region: Strabismus; pfam06638"
                     /db_xref="CDD:461971"
ORIGIN      
        1 gacaggaagc ggaaagcagc agtgcagcgg cggcggcggc ggggctctgc ctctacagga
       61 gcccagtgca ggccgcagag tcggggccgc tgcgagccga gaccgcgggc cgcggagccc
      121 gcacggccgg cgcggagaat tcgttcctgc cgaagagtaa gtccttgatt cccaggccct
      181 ttgaggtctg aggaggagtc cagtaggtga gattctctac ctctaaggag aaacagtacc
      241 tgctccttca ccaagagcaa gctctccgtt gctatggata ccgaatccac gtattctgga
      301 tactcttact actccagtca ttcgaaaaaa tctcacagac aaggggaaag aaatagagag
      361 aggcacaaat caccccggaa taaagatggc agagggtcag aaaaatctgt caccattcaa
      421 gctcccactg gagagccctt gttggcaaat gattctactc ggacggagga agctcaggat
      481 gacaactggg gggagaccac cacggccatc acaggcactt cggagcatag catctcgcag
      541 gaggacatcg cccgcatcag caaggacatg gaggacagcg tggggctgga ctgcagacgc
      601 tacctgggcc tcaccgttgc cacggtgctc ggactcctgg tcttcctcac ccccattgcc
      661 ttcatcctgc tgccccccat cctgtggcgg gaggagctgg agccttgtgg caccatctgc
      721 gagggactct tcatctccat ggcattcaag ctcctgattc tgctcattgg gacctgggct
      781 ctgttcttcc gcaagcagag agccgacgtg ccgcggatct tcgtgttccg tgcgctcttg
      841 ttggtcctca tctttctctt cgtggtctcc tattggcttt tttacggggt ccgcattttg
      901 gactctcggg accgaaatta ccagggcatc gtgcaatacg ccgtctccct cgtggacgcc
      961 ctcctcttca tccactacct ggccgttgtc ctgctggagc tcagacagct gcagcccatg
     1021 ttcacgctgc aggtggtccg ctccactgat ggcgagtccc gcttctacag ctttggacac
     1081 ctgagtatcc agcgagcagc attggtggtt ctggaaaatt actataaaga tttcaccatc
     1141 tataacccca acctcctaac agcctccaaa ttccgagcag ccaagcacat ggccgggctg
     1201 aaagtctaca acgtagatgg ccccagtaat aacgccactg gtcagtcccg ggcaatgatc
     1261 gccgcagctg ctcggcgcag ggactcgagc cacaacgagt tgtattatga ggaggcggaa
     1321 catgaacggc gggtgaagaa gcggagagca aggctggtgg ttgcagtgga ggaggccttc
     1381 atccacatcc agcgtctcca ggctgaggag cagcagaaag ccccagggga ggtgatggac
     1441 cccagggagg ccgcccaggc catcttcccc tccatggccc gggctctgca gaagtacctg
     1501 cgcaccaccc ggcagcagca ctaccacagc atggagagca tcctgcagca cctggccttc
     1561 tgcatcacca acagcatgac cccaaaggcc ttcctcgagc ggtacctcag cacgggtccc
     1621 acgctgcagt acgaccggga gcgctggctc gccatgcagt ggcggctcgt cagtgatgag
     1681 gccgtgacca gcgggctgcg ggatggactc gtttttgtcc tcaaatgctt ggacttcagc
     1741 ctcgtagtca atgtgaagaa aattccattc atcatgctct cagaagagtt catagacccc
     1801 aagtctcaca aatttgtcct tcgcttacag tctgagacgt cagtttaaaa gttctatatt
     1861 tgtggcttta ttaaaaaaaa aaaaaagaat atatagagag atatatatgt ataccagagg
     1921 ggcatctttg tttttattat tcttcattgc tgactgaact ggcagatgag agaccagggt
     1981 cctttgacca tctgcacttt atttgggagg aagcagaaga tgtccgtcct ggaaaaaagt
     2041 gactgatgac atctggcttg gggatgggac gtctctcgag aagccgttcc ctggcgtttc
     2101 tgtgacagct gcaaaccaaa gcggagctgg aggttcttgg gaacctcgcc ttacgactcg
     2161 tccctgcctt tcgtccagca cccagccctg ccctgcttct ggccatccca ctcgtgggcc
     2221 tctggggaca cgtctttgtc ctgtttcagg gaaccagacg ggacatgtcc acacgcgttt
     2281 gtatatgtaa acatccggca ccacgggagc cacgggccgt tcacgaaatg cctgccttcg
     2341 tctttgttct ctgttgcctt gggttctgca gagaaagatc acaacgacaa acgtgcacta
     2401 tcagtttaca gctcttaatg atttgatttt tttccccaaa gagagaatct acctgcccca
     2461 gttttgacct gcttgcctac cagcttgagc aggtagctct ttcctaaccc agtgatggcc
     2521 tacctgaccc cgctccatcc cacccccacc ctcccaaaac acaccacacc ctacctggct
     2581 ggcagcccag ccttcagagc cgcccaggac ctggctcttc acgtgtgccc tcgggctcca
     2641 tgcacagcct caggtccgcc ccacggattg tttgtttacg tagggaaggg tgaagtaccc
     2701 cccaggtagg tcccagggag ggcatgccag ctaggatgtc cctttcaggc tgcggcagga
     2761 gcccctcccc ccactgctcc acacccacca gggggagacc cacgctgtga ctcagggact
     2821 ggcaagttca gctcagagcc tccatttccc tggaggtacg tcctcacaaa gctccatagc
     2881 aagctgtctt gccaagggac agctgcggcg tccagcccct gactctgacc accgtcactg
     2941 tgcgctcatc acctccgccc cttactaccc gtgcaggggc tcctttaggc cctggtgcta
     3001 aatcactcgt agttggcagt taagcgagga gagggaatgg gcaagctgca gcatctgggg
     3061 aaaggaaagt agggagccga gcttgtgatc cagaatgatg ccagcctggt ctgtttctta
     3121 gatggtttca gtgggcttgc ctgggcccgg gcccagggga gcagccgggc cgggcgagcg
     3181 gaggcgccaa ggggcagagc cccgcagcgg ccttcagttc ctgcatctgc cttcctgtat
     3241 ccacagcaaa cctttgcaga gtgttcactc tcgcttttcc ccagtgttta gggtaaccag
     3301 tcaccttgct atagccaagg atgacactgt caaatgctct ttgtgtatgt gttcgcatgt
     3361 accctttctg gtttatgcat tccacaagtg gtgcagtgtt tgttattact gtcttaaacc
     3421 aaaattggct tttgatattt gtcacacacc tgtacctgaa aaagtaaaca gcgttcttga
     3481 atctacagcc ttcaggtcaa caagaagatg tgttggaaaa gcaggaagga gaaaccagtc
     3541 ggtatggtgt gaagccaaga catactattt aactacgtgg tttccgttta tgaaaaacac
     3601 ataccatgta accgtggtgc ttttgttctt cttagttttg cctttaggtc ccttcaagcc
     3661 ggacattcct tttgatgtct ttctcaggaa tatattttgg gagactgggc aagggatggt
     3721 gaatgtataa gagactttgg ctgcataaag gttatactgt cccagactaa atgtatcaca
     3781 ggctgctgca tcagaaaccc ggcaatagaa gtgccatacg tgtatattca tctggttaat
     3841 aacgacacta tccatcagct ttctaaaaaa ctgtgcttac aaccctgtct tcaattacca
     3901 gtccagaagg ggttaagttg gattcatggc tttggtgcct gccttcccag cggggtgaag
     3961 aaaggtttaa attaaggaat ttcttttctc tctctcccag tctttgcata ggagaatgtc
     4021 agactttgtg aaattactgt ttctgtttta aattgaatat tgattttttt acactgactt
     4081 tgtactgagt ccttttcgaa agaacaacgt aataaaatgc gggatctttg tatcaaggct
     4141 ttgcacttgc caactcttca tagcctgagt tactggtaca gtgggaacaa tgtaaatggc
     4201 atttttttaa aaatgtaagt tttcagaaaa gctgtctcat acagttgaac acagtccttt
     4261 tcagttcttg cagtcaataa gctcttcttt tgaaaagggg taaactgtgc cctgggctag
     4321 tagaattaga agataagttc acattagagg atacaagatt ttgtttgcct gaaatgttta
     4381 tagattttct ataactttca acctgttatt aaaatgggaa cgttaaacag taaggagtag
     4441 aaaaacttaa tgaggagtat atgtctgaga ttgttctctt ccctggcgat gttttaacca
     4501 gtagatagtt tctgttctta agtgtgtact tttgaagata atgacaattt ttaatcgtcc
     4561 atgaactaaa cagtgaagtc tgcattcata gagctggaag ggattttaag gctttgtgat
     4621 tgatccatcc tttgcattat cggttaagtc aaaacgtgta atggttttgc gaaagttttt
     4681 aaagtaagcc ctagagaaaa tgcttgacta ttttttgccc agctgtcatc atctcccttc
     4741 cttcctctct gtcctctgtc tacgcacagg acaaattctg tacggccaac ggatagagga
     4801 aagtggccgt agtatatgtg tacgtgtgtg ttgtgctgcg gttcattgcc agagctcgga
     4861 cctcctttgc aatggggaga tggtggttgt tcgggtgtgt gttgggtggg catgaggtgc
     4921 tccgctgtct tcaccatagt tggtggtggt cgagtactct ctttcttgtg tctcctggtc
     4981 actttggtgt gcatgtatat agataagcct gtagccctgt gggaagccat gagcctgtta
     5041 ggctgacaga aactgatgac cctgcccctc cttacttttt cccgggagag tgagtgtagc
     5101 agccgctcaa tgaaatcagc aaaatcaagt ccttgtttac tctcgtctgt gtgaaccctg
     5161 ctatggaagg ctccctacac tgggacgcac atttgtttgt gggtgtgtgt ttctatatat
     5221 gtgagcattt ctctgagtgt aattaccaga tggacggcat gtttatgtta gccatctgaa
     5281 catctgtgtt atctgtaaca gatgggtgtg tatctcagca aataacttgt ggatgtgttt
     5341 atatagatga gtgtgtgaaa gtccatgtgt ttctacatat gccctgtgtt tgagagatac
     5401 cctaacagca cccatcttct gggaggttac tctaaagcca gatacttctc cctccccgcc
     5461 tttactcctc cccctaggtt acactggctt ctccccagga gtaaatggct ttagcacagc
     5521 agtgtcttct ggagagcctg ctgtcctgta ggcaagtcca ttagactttc ttgcctcagg
     5581 actttatgac ctgaaaacag caagaaagaa aggtcaagct ccatgataat gactgctcca
     5641 acttcactac cccggaagcc ttaccataga tttctcaata taacttaaaa attgagcttc
     5701 atttaaaaaa aaagattgat tactaaaagc agcacagaaa tggtgccata atattcaaat
     5761 agtccagcag agaccctgca gttgtaaagt ggtgtaagta tttctgggta gtgtttgtgc
     5821 tttgcgagtc ttgttttaca aaaaataaat cactactgtg aatttactgc tatgtaaccc
     5881 tgtggccata atccattata aataaaatat gagttattct taagcccata gcacagtttt
     5941 tgaatggtat tcagtgcagt agtgaataag gtaccttagg cactacattg aaatctccat
     6001 attgagcttt aaccaagtgg atgcctagaa aattagattt ggggtcacat ttttgacaaa
     6061 atatattttg gtcaaagaag gaagagaagg gtaataagat gtatctatca ggtatcgcat
     6121 gttaggcgtt gtcttagaat gtgaattcct ttaaggtagg cgttatctga attttacagg
     6181 taagaaaagg gatgagcaga gagggaggaa cttgcttgaa atctcatggc taataaatga
     6241 aatttcaaat ctaatgtttg atcccaatcc ctcagtcact acctcgaagt attacctaaa
     6301 taatctggca ttttctggat gtggaggaga gacctgagga tacttaacct tgaatcaaaa
     6361 gctgggattg ggggttcgtt ggaggcgaaa tcacatctgt tctttgacct cgggtttgca
     6421 ccagagctgt ggctccaggg aaggctgctc cgccgtgcta gcagatttct caggaatttt
     6481 gatggaaaga acttgaggat cctccttccc ttaggaaaac cagccctgct agcgctgcac
     6541 ctgctgtagg actcaggtgc tattgttctg gtagccaccc tttgcttctg tcccctcccc
     6601 ctccactccc accctgctgg cttgggcagg tgtgcacctt ggggaagtgt gcaggggctg
     6661 acctggcctc cctctgatct gaggaggcct cttcctggtg ttttgtcaac attatgcccc
     6721 aacagcttcc actggttggg gtgggagagg gactgcctgc agcccagcct agggaggttt
     6781 gggactggag cccctggcct ccatccttga cttcatgttc tcagcaagca ttttgcatcc
     6841 cactatcttc cccacatttg ccctctagag ttttaatcac tagacataaa acaggactct
     6901 gagcacactt ttttctctat tccaatgtct tgaggttttg gtttagttgt gcataaacta
     6961 ccttctctcc tgctgtttgc tttcagtaga ggataggaaa ggaaagataa cacacctctc
     7021 ggcattgctg cttattagga acgagtagga cacattttca gagggtaaat agggaatgta
     7081 taactactga ataaaattag attttagtac tctgtgtccc ttttaccagg cctgtccctg
     7141 tctacttaga taacccaatt tgttttgttt cacctgtaac ataaatctct tcaatgggtt
     7201 gttttagagt ctccccaaca cagcaacagg tttccgacac ctgaagcagc acggtgaaat
     7261 gttactccca atatggcacc aggaatctac aattgatatg tctctcagct tgaaaacatc
     7321 agtgttttgt ccttgtttta gtgggataaa aacactctta agccttgggg acaaatgtga
     7381 ccaattccca ggcttttatc ttgagtgtct ttggcacttc ttttggcact gaaataatac
     7441 ttggataaaa atatttgtgc agtgtctggt tttgtatttg cttgtattta tctcagcctt
     7501 cccttgtgca catgagcttt cattctgaag gaggtcatcc tttaggagct tttaaacccc
     7561 caaaagccct caccttggga aagcttcatg tctgaggcca gagactcttg ctcagggaat
     7621 tagtagtggg acccgggcat ctgatctgcg ggtgtcaagt ctagttcaat tcatgttgta
     7681 gcgaatttaa acagttaata caccatcacc attccagggg ccaggtggag agaggtggcg
     7741 gtcgctttgc attggccagc gcccctcagt tatagaaata atggaatatt cacttagtgt
     7801 tgatcatcat tctaaaaaaa aatccagact ttgctgagaa gtccttcttt ttataatgga
     7861 ttcacagtag gctttaacta aatagcagag tcctctggga ctcctaaatt atgacatgtt
     7921 taaaaaactt gatttccaag cagttgttta tgacaactat tgcatagagt ggaggacacc
     7981 agccaggatg agggcagtgg tggatactgg ctcactgggg tggtgaatta actcatgttg
     8041 tgatgaccac ttcctcaaca aagatgcttg ggagaagacc agagaggcag gagccaggtc
     8101 ttactcaagg gaagtttatt tgaccatcgc ttttgtgttg aaaggacttt acatttctgg
     8161 atttagaatc cagtatcaac ccagcaactt cagtgacaaa accatctgtc tatctgatgg
     8221 ggccattact gtttgtgcaa agatgtggcc aggggtcttt ttcattctcc cttattagtt
     8281 aatactgcac tttgtaacca gaaggggaag ttttgctggt tagcaaaatg cacaatcact
     8341 agatatgtat gacaaagtct gagtgtgact tcctgcataa actgggtggt gggctctatt
     8401 gagacattgc aaacatgtga atgaatgaat tacactacca gcaaccatct gcccaagtac
     8461 atttacgtat attcataaga tgtatgcagt gaagcctctt ttcattgtaa catcagtaac
     8521 aatgttagag tctatgaggg gcatagtgta cctggcatcc aagttatttt gttctctttt
     8581 gggcccccat tccaattaat tgtaaaacat tttacatgtt acatttttta tactgtaaaa
     8641 ctcggaaaat aaactgaaat cccaaattac a
//
LOCUS       XM_032650965            8958 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus VANGL planar cell polarity protein 1
            (VANGL1), transcript variant X2, mRNA.
ACCESSION   XM_032650965
VERSION     XM_032650965.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8958
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8958
                     /gene="VANGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 15
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116763365"
     CDS             561..2135
                     /gene="VANGL1"
                     /codon_start=1
                     /product="vang-like protein 1"
                     /protein_id="XP_032506856.1"
                     /db_xref="GeneID:116763365"
                     /translation="MDTESTYSGYSYYSSHSKKSHRQGERNRERHKSPRNKDGRGSEK
                     SVTIQAPTGEPLLANDSTRTEEAQDDNWGETTTAITGTSEHSISQEDIARISKDMEDS
                     VGLDCRRYLGLTVATVLGLLVFLTPIAFILLPPILWREELEPCGTICEGLFISMAFKL
                     LILLIGTWALFFRKQRADVPRIFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQG
                     IVQYAVSLVDALLFIHYLAVVLLELRQLQPMFTLQVVRSTDGESRFYSFGHLSIQRAA
                     LVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAAR
                     RRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPRE
                     AAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLERYLSTGPT
                     LQYDRERWLAMQWRLVSDEAVTSGLRDGLVFVLKCLDFSLVVNVKKIPFIMLSEEFID
                     PKSHKFVLRLQSETSV"
     misc_feature    633..2132
                     /gene="VANGL1"
                     /note="Strabismus protein; Region: Strabismus; pfam06638"
                     /db_xref="CDD:461971"
ORIGIN      
        1 tgcctggacc tgtgaatctg ggcaatgcaa ggaagggcat catatattgg gtgctgattc
       61 ggagcctatg tagctttctg gagaaccatg ccccagtcct gcaacatatc gccacctagc
      121 tggcacgata attgagtctt caagaggcca ttccactgtt gaatcgagcc atctgcttca
      181 gggtgctggt gaacacggca agaccggtga attctacaag cacgtgccca tcgctgcact
      241 tcctcctgcc tcactgcctt caaactggga catcagtgtt ttcctgcctt cggactcaaa
      301 ctgaaacagc agctcttcct gggttttaag actgccggcc ttcacacagg agctacacca
      361 ttagctctcc tggggctcca gcttgacaac tgcagatccg ggccttctca gcctccataa
      421 tcacaattcg ttcctgccga agagtaagtc cttgattccc aggccctttg aggtctgagg
      481 aggagtccag taggtgagat tctctacctc taaggagaaa cagtacctgc tccttcacca
      541 agagcaagct ctccgttgct atggataccg aatccacgta ttctggatac tcttactact
      601 ccagtcattc gaaaaaatct cacagacaag gggaaagaaa tagagagagg cacaaatcac
      661 cccggaataa agatggcaga gggtcagaaa aatctgtcac cattcaagct cccactggag
      721 agcccttgtt ggcaaatgat tctactcgga cggaggaagc tcaggatgac aactgggggg
      781 agaccaccac ggccatcaca ggcacttcgg agcatagcat ctcgcaggag gacatcgccc
      841 gcatcagcaa ggacatggag gacagcgtgg ggctggactg cagacgctac ctgggcctca
      901 ccgttgccac ggtgctcgga ctcctggtct tcctcacccc cattgccttc atcctgctgc
      961 cccccatcct gtggcgggag gagctggagc cttgtggcac catctgcgag ggactcttca
     1021 tctccatggc attcaagctc ctgattctgc tcattgggac ctgggctctg ttcttccgca
     1081 agcagagagc cgacgtgccg cggatcttcg tgttccgtgc gctcttgttg gtcctcatct
     1141 ttctcttcgt ggtctcctat tggctttttt acggggtccg cattttggac tctcgggacc
     1201 gaaattacca gggcatcgtg caatacgccg tctccctcgt ggacgccctc ctcttcatcc
     1261 actacctggc cgttgtcctg ctggagctca gacagctgca gcccatgttc acgctgcagg
     1321 tggtccgctc cactgatggc gagtcccgct tctacagctt tggacacctg agtatccagc
     1381 gagcagcatt ggtggttctg gaaaattact ataaagattt caccatctat aaccccaacc
     1441 tcctaacagc ctccaaattc cgagcagcca agcacatggc cgggctgaaa gtctacaacg
     1501 tagatggccc cagtaataac gccactggtc agtcccgggc aatgatcgcc gcagctgctc
     1561 ggcgcaggga ctcgagccac aacgagttgt attatgagga ggcggaacat gaacggcggg
     1621 tgaagaagcg gagagcaagg ctggtggttg cagtggagga ggccttcatc cacatccagc
     1681 gtctccaggc tgaggagcag cagaaagccc caggggaggt gatggacccc agggaggccg
     1741 cccaggccat cttcccctcc atggcccggg ctctgcagaa gtacctgcgc accacccggc
     1801 agcagcacta ccacagcatg gagagcatcc tgcagcacct ggccttctgc atcaccaaca
     1861 gcatgacccc aaaggccttc ctcgagcggt acctcagcac gggtcccacg ctgcagtacg
     1921 accgggagcg ctggctcgcc atgcagtggc ggctcgtcag tgatgaggcc gtgaccagcg
     1981 ggctgcggga tggactcgtt tttgtcctca aatgcttgga cttcagcctc gtagtcaatg
     2041 tgaagaaaat tccattcatc atgctctcag aagagttcat agaccccaag tctcacaaat
     2101 ttgtccttcg cttacagtct gagacgtcag tttaaaagtt ctatatttgt ggctttatta
     2161 aaaaaaaaaa aaagaatata tagagagata tatatgtata ccagaggggc atctttgttt
     2221 ttattattct tcattgctga ctgaactggc agatgagaga ccagggtcct ttgaccatct
     2281 gcactttatt tgggaggaag cagaagatgt ccgtcctgga aaaaagtgac tgatgacatc
     2341 tggcttgggg atgggacgtc tctcgagaag ccgttccctg gcgtttctgt gacagctgca
     2401 aaccaaagcg gagctggagg ttcttgggaa cctcgcctta cgactcgtcc ctgcctttcg
     2461 tccagcaccc agccctgccc tgcttctggc catcccactc gtgggcctct ggggacacgt
     2521 ctttgtcctg tttcagggaa ccagacggga catgtccaca cgcgtttgta tatgtaaaca
     2581 tccggcacca cgggagccac gggccgttca cgaaatgcct gccttcgtct ttgttctctg
     2641 ttgccttggg ttctgcagag aaagatcaca acgacaaacg tgcactatca gtttacagct
     2701 cttaatgatt tgattttttt ccccaaagag agaatctacc tgccccagtt ttgacctgct
     2761 tgcctaccag cttgagcagg tagctctttc ctaacccagt gatggcctac ctgaccccgc
     2821 tccatcccac ccccaccctc ccaaaacaca ccacacccta cctggctggc agcccagcct
     2881 tcagagccgc ccaggacctg gctcttcacg tgtgccctcg ggctccatgc acagcctcag
     2941 gtccgcccca cggattgttt gtttacgtag ggaagggtga agtacccccc aggtaggtcc
     3001 cagggagggc atgccagcta ggatgtccct ttcaggctgc ggcaggagcc cctcccccca
     3061 ctgctccaca cccaccaggg ggagacccac gctgtgactc agggactggc aagttcagct
     3121 cagagcctcc atttccctgg aggtacgtcc tcacaaagct ccatagcaag ctgtcttgcc
     3181 aagggacagc tgcggcgtcc agcccctgac tctgaccacc gtcactgtgc gctcatcacc
     3241 tccgcccctt actacccgtg caggggctcc tttaggccct ggtgctaaat cactcgtagt
     3301 tggcagttaa gcgaggagag ggaatgggca agctgcagca tctggggaaa ggaaagtagg
     3361 gagccgagct tgtgatccag aatgatgcca gcctggtctg tttcttagat ggtttcagtg
     3421 ggcttgcctg ggcccgggcc caggggagca gccgggccgg gcgagcggag gcgccaaggg
     3481 gcagagcccc gcagcggcct tcagttcctg catctgcctt cctgtatcca cagcaaacct
     3541 ttgcagagtg ttcactctcg cttttcccca gtgtttaggg taaccagtca ccttgctata
     3601 gccaaggatg acactgtcaa atgctctttg tgtatgtgtt cgcatgtacc ctttctggtt
     3661 tatgcattcc acaagtggtg cagtgtttgt tattactgtc ttaaaccaaa attggctttt
     3721 gatatttgtc acacacctgt acctgaaaaa gtaaacagcg ttcttgaatc tacagccttc
     3781 aggtcaacaa gaagatgtgt tggaaaagca ggaaggagaa accagtcggt atggtgtgaa
     3841 gccaagacat actatttaac tacgtggttt ccgtttatga aaaacacata ccatgtaacc
     3901 gtggtgcttt tgttcttctt agttttgcct ttaggtccct tcaagccgga cattcctttt
     3961 gatgtctttc tcaggaatat attttgggag actgggcaag ggatggtgaa tgtataagag
     4021 actttggctg cataaaggtt atactgtccc agactaaatg tatcacaggc tgctgcatca
     4081 gaaacccggc aatagaagtg ccatacgtgt atattcatct ggttaataac gacactatcc
     4141 atcagctttc taaaaaactg tgcttacaac cctgtcttca attaccagtc cagaaggggt
     4201 taagttggat tcatggcttt ggtgcctgcc ttcccagcgg ggtgaagaaa ggtttaaatt
     4261 aaggaatttc ttttctctct ctcccagtct ttgcatagga gaatgtcaga ctttgtgaaa
     4321 ttactgtttc tgttttaaat tgaatattga tttttttaca ctgactttgt actgagtcct
     4381 tttcgaaaga acaacgtaat aaaatgcggg atctttgtat caaggctttg cacttgccaa
     4441 ctcttcatag cctgagttac tggtacagtg ggaacaatgt aaatggcatt tttttaaaaa
     4501 tgtaagtttt cagaaaagct gtctcataca gttgaacaca gtccttttca gttcttgcag
     4561 tcaataagct cttcttttga aaaggggtaa actgtgccct gggctagtag aattagaaga
     4621 taagttcaca ttagaggata caagattttg tttgcctgaa atgtttatag attttctata
     4681 actttcaacc tgttattaaa atgggaacgt taaacagtaa ggagtagaaa aacttaatga
     4741 ggagtatatg tctgagattg ttctcttccc tggcgatgtt ttaaccagta gatagtttct
     4801 gttcttaagt gtgtactttt gaagataatg acaattttta atcgtccatg aactaaacag
     4861 tgaagtctgc attcatagag ctggaaggga ttttaaggct ttgtgattga tccatccttt
     4921 gcattatcgg ttaagtcaaa acgtgtaatg gttttgcgaa agtttttaaa gtaagcccta
     4981 gagaaaatgc ttgactattt tttgcccagc tgtcatcatc tcccttcctt cctctctgtc
     5041 ctctgtctac gcacaggaca aattctgtac ggccaacgga tagaggaaag tggccgtagt
     5101 atatgtgtac gtgtgtgttg tgctgcggtt cattgccaga gctcggacct cctttgcaat
     5161 ggggagatgg tggttgttcg ggtgtgtgtt gggtgggcat gaggtgctcc gctgtcttca
     5221 ccatagttgg tggtggtcga gtactctctt tcttgtgtct cctggtcact ttggtgtgca
     5281 tgtatataga taagcctgta gccctgtggg aagccatgag cctgttaggc tgacagaaac
     5341 tgatgaccct gcccctcctt actttttccc gggagagtga gtgtagcagc cgctcaatga
     5401 aatcagcaaa atcaagtcct tgtttactct cgtctgtgtg aaccctgcta tggaaggctc
     5461 cctacactgg gacgcacatt tgtttgtggg tgtgtgtttc tatatatgtg agcatttctc
     5521 tgagtgtaat taccagatgg acggcatgtt tatgttagcc atctgaacat ctgtgttatc
     5581 tgtaacagat gggtgtgtat ctcagcaaat aacttgtgga tgtgtttata tagatgagtg
     5641 tgtgaaagtc catgtgtttc tacatatgcc ctgtgtttga gagataccct aacagcaccc
     5701 atcttctggg aggttactct aaagccagat acttctccct ccccgccttt actcctcccc
     5761 ctaggttaca ctggcttctc cccaggagta aatggcttta gcacagcagt gtcttctgga
     5821 gagcctgctg tcctgtaggc aagtccatta gactttcttg cctcaggact ttatgacctg
     5881 aaaacagcaa gaaagaaagg tcaagctcca tgataatgac tgctccaact tcactacccc
     5941 ggaagcctta ccatagattt ctcaatataa cttaaaaatt gagcttcatt taaaaaaaaa
     6001 gattgattac taaaagcagc acagaaatgg tgccataata ttcaaatagt ccagcagaga
     6061 ccctgcagtt gtaaagtggt gtaagtattt ctgggtagtg tttgtgcttt gcgagtcttg
     6121 ttttacaaaa aataaatcac tactgtgaat ttactgctat gtaaccctgt ggccataatc
     6181 cattataaat aaaatatgag ttattcttaa gcccatagca cagtttttga atggtattca
     6241 gtgcagtagt gaataaggta ccttaggcac tacattgaaa tctccatatt gagctttaac
     6301 caagtggatg cctagaaaat tagatttggg gtcacatttt tgacaaaata tattttggtc
     6361 aaagaaggaa gagaagggta ataagatgta tctatcaggt atcgcatgtt aggcgttgtc
     6421 ttagaatgtg aattccttta aggtaggcgt tatctgaatt ttacaggtaa gaaaagggat
     6481 gagcagagag ggaggaactt gcttgaaatc tcatggctaa taaatgaaat ttcaaatcta
     6541 atgtttgatc ccaatccctc agtcactacc tcgaagtatt acctaaataa tctggcattt
     6601 tctggatgtg gaggagagac ctgaggatac ttaaccttga atcaaaagct gggattgggg
     6661 gttcgttgga ggcgaaatca catctgttct ttgacctcgg gtttgcacca gagctgtggc
     6721 tccagggaag gctgctccgc cgtgctagca gatttctcag gaattttgat ggaaagaact
     6781 tgaggatcct ccttccctta ggaaaaccag ccctgctagc gctgcacctg ctgtaggact
     6841 caggtgctat tgttctggta gccacccttt gcttctgtcc cctccccctc cactcccacc
     6901 ctgctggctt gggcaggtgt gcaccttggg gaagtgtgca ggggctgacc tggcctccct
     6961 ctgatctgag gaggcctctt cctggtgttt tgtcaacatt atgccccaac agcttccact
     7021 ggttggggtg ggagagggac tgcctgcagc ccagcctagg gaggtttggg actggagccc
     7081 ctggcctcca tccttgactt catgttctca gcaagcattt tgcatcccac tatcttcccc
     7141 acatttgccc tctagagttt taatcactag acataaaaca ggactctgag cacacttttt
     7201 tctctattcc aatgtcttga ggttttggtt tagttgtgca taaactacct tctctcctgc
     7261 tgtttgcttt cagtagagga taggaaagga aagataacac acctctcggc attgctgctt
     7321 attaggaacg agtaggacac attttcagag ggtaaatagg gaatgtataa ctactgaata
     7381 aaattagatt ttagtactct gtgtcccttt taccaggcct gtccctgtct acttagataa
     7441 cccaatttgt tttgtttcac ctgtaacata aatctcttca atgggttgtt ttagagtctc
     7501 cccaacacag caacaggttt ccgacacctg aagcagcacg gtgaaatgtt actcccaata
     7561 tggcaccagg aatctacaat tgatatgtct ctcagcttga aaacatcagt gttttgtcct
     7621 tgttttagtg ggataaaaac actcttaagc cttggggaca aatgtgacca attcccaggc
     7681 ttttatcttg agtgtctttg gcacttcttt tggcactgaa ataatacttg gataaaaata
     7741 tttgtgcagt gtctggtttt gtatttgctt gtatttatct cagccttccc ttgtgcacat
     7801 gagctttcat tctgaaggag gtcatccttt aggagctttt aaacccccaa aagccctcac
     7861 cttgggaaag cttcatgtct gaggccagag actcttgctc agggaattag tagtgggacc
     7921 cgggcatctg atctgcgggt gtcaagtcta gttcaattca tgttgtagcg aatttaaaca
     7981 gttaatacac catcaccatt ccaggggcca ggtggagaga ggtggcggtc gctttgcatt
     8041 ggccagcgcc cctcagttat agaaataatg gaatattcac ttagtgttga tcatcattct
     8101 aaaaaaaaat ccagactttg ctgagaagtc cttcttttta taatggattc acagtaggct
     8161 ttaactaaat agcagagtcc tctgggactc ctaaattatg acatgtttaa aaaacttgat
     8221 ttccaagcag ttgtttatga caactattgc atagagtgga ggacaccagc caggatgagg
     8281 gcagtggtgg atactggctc actggggtgg tgaattaact catgttgtga tgaccacttc
     8341 ctcaacaaag atgcttggga gaagaccaga gaggcaggag ccaggtctta ctcaagggaa
     8401 gtttatttga ccatcgcttt tgtgttgaaa ggactttaca tttctggatt tagaatccag
     8461 tatcaaccca gcaacttcag tgacaaaacc atctgtctat ctgatggggc cattactgtt
     8521 tgtgcaaaga tgtggccagg ggtctttttc attctccctt attagttaat actgcacttt
     8581 gtaaccagaa ggggaagttt tgctggttag caaaatgcac aatcactaga tatgtatgac
     8641 aaagtctgag tgtgacttcc tgcataaact gggtggtggg ctctattgag acattgcaaa
     8701 catgtgaatg aatgaattac actaccagca accatctgcc caagtacatt tacgtatatt
     8761 cataagatgt atgcagtgaa gcctcttttc attgtaacat cagtaacaat gttagagtct
     8821 atgaggggca tagtgtacct ggcatccaag ttattttgtt ctcttttggg cccccattcc
     8881 aattaattgt aaaacatttt acatgttaca ttttttatac tgtaaaactc ggaaaataaa
     8941 ctgaaatccc aaattaca
//
LOCUS       XM_032650975            8527 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus VANGL planar cell polarity protein 1
            (VANGL1), transcript variant X3, mRNA.
ACCESSION   XM_032650975
VERSION     XM_032650975.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8527
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8527
                     /gene="VANGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116763365"
     CDS             130..1704
                     /gene="VANGL1"
                     /codon_start=1
                     /product="vang-like protein 1"
                     /protein_id="XP_032506866.1"
                     /db_xref="GeneID:116763365"
                     /translation="MDTESTYSGYSYYSSHSKKSHRQGERNRERHKSPRNKDGRGSEK
                     SVTIQAPTGEPLLANDSTRTEEAQDDNWGETTTAITGTSEHSISQEDIARISKDMEDS
                     VGLDCRRYLGLTVATVLGLLVFLTPIAFILLPPILWREELEPCGTICEGLFISMAFKL
                     LILLIGTWALFFRKQRADVPRIFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQG
                     IVQYAVSLVDALLFIHYLAVVLLELRQLQPMFTLQVVRSTDGESRFYSFGHLSIQRAA
                     LVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAAR
                     RRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPRE
                     AAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLERYLSTGPT
                     LQYDRERWLAMQWRLVSDEAVTSGLRDGLVFVLKCLDFSLVVNVKKIPFIMLSEEFID
                     PKSHKFVLRLQSETSV"
     misc_feature    202..1701
                     /gene="VANGL1"
                     /note="Strabismus protein; Region: Strabismus; pfam06638"
                     /db_xref="CDD:461971"
ORIGIN      
        1 gtgtgctctt ccataagtcc ttgattccca ggccctttga ggtctgagga ggagtccagt
       61 aggtgagatt ctctacctct aaggagaaac agtacctgct ccttcaccaa gagcaagctc
      121 tccgttgcta tggataccga atccacgtat tctggatact cttactactc cagtcattcg
      181 aaaaaatctc acagacaagg ggaaagaaat agagagaggc acaaatcacc ccggaataaa
      241 gatggcagag ggtcagaaaa atctgtcacc attcaagctc ccactggaga gcccttgttg
      301 gcaaatgatt ctactcggac ggaggaagct caggatgaca actgggggga gaccaccacg
      361 gccatcacag gcacttcgga gcatagcatc tcgcaggagg acatcgcccg catcagcaag
      421 gacatggagg acagcgtggg gctggactgc agacgctacc tgggcctcac cgttgccacg
      481 gtgctcggac tcctggtctt cctcaccccc attgccttca tcctgctgcc ccccatcctg
      541 tggcgggagg agctggagcc ttgtggcacc atctgcgagg gactcttcat ctccatggca
      601 ttcaagctcc tgattctgct cattgggacc tgggctctgt tcttccgcaa gcagagagcc
      661 gacgtgccgc ggatcttcgt gttccgtgcg ctcttgttgg tcctcatctt tctcttcgtg
      721 gtctcctatt ggctttttta cggggtccgc attttggact ctcgggaccg aaattaccag
      781 ggcatcgtgc aatacgccgt ctccctcgtg gacgccctcc tcttcatcca ctacctggcc
      841 gttgtcctgc tggagctcag acagctgcag cccatgttca cgctgcaggt ggtccgctcc
      901 actgatggcg agtcccgctt ctacagcttt ggacacctga gtatccagcg agcagcattg
      961 gtggttctgg aaaattacta taaagatttc accatctata accccaacct cctaacagcc
     1021 tccaaattcc gagcagccaa gcacatggcc gggctgaaag tctacaacgt agatggcccc
     1081 agtaataacg ccactggtca gtcccgggca atgatcgccg cagctgctcg gcgcagggac
     1141 tcgagccaca acgagttgta ttatgaggag gcggaacatg aacggcgggt gaagaagcgg
     1201 agagcaaggc tggtggttgc agtggaggag gccttcatcc acatccagcg tctccaggct
     1261 gaggagcagc agaaagcccc aggggaggtg atggacccca gggaggccgc ccaggccatc
     1321 ttcccctcca tggcccgggc tctgcagaag tacctgcgca ccacccggca gcagcactac
     1381 cacagcatgg agagcatcct gcagcacctg gccttctgca tcaccaacag catgacccca
     1441 aaggccttcc tcgagcggta cctcagcacg ggtcccacgc tgcagtacga ccgggagcgc
     1501 tggctcgcca tgcagtggcg gctcgtcagt gatgaggccg tgaccagcgg gctgcgggat
     1561 ggactcgttt ttgtcctcaa atgcttggac ttcagcctcg tagtcaatgt gaagaaaatt
     1621 ccattcatca tgctctcaga agagttcata gaccccaagt ctcacaaatt tgtccttcgc
     1681 ttacagtctg agacgtcagt ttaaaagttc tatatttgtg gctttattaa aaaaaaaaaa
     1741 aagaatatat agagagatat atatgtatac cagaggggca tctttgtttt tattattctt
     1801 cattgctgac tgaactggca gatgagagac cagggtcctt tgaccatctg cactttattt
     1861 gggaggaagc agaagatgtc cgtcctggaa aaaagtgact gatgacatct ggcttgggga
     1921 tgggacgtct ctcgagaagc cgttccctgg cgtttctgtg acagctgcaa accaaagcgg
     1981 agctggaggt tcttgggaac ctcgccttac gactcgtccc tgcctttcgt ccagcaccca
     2041 gccctgccct gcttctggcc atcccactcg tgggcctctg gggacacgtc tttgtcctgt
     2101 ttcagggaac cagacgggac atgtccacac gcgtttgtat atgtaaacat ccggcaccac
     2161 gggagccacg ggccgttcac gaaatgcctg ccttcgtctt tgttctctgt tgccttgggt
     2221 tctgcagaga aagatcacaa cgacaaacgt gcactatcag tttacagctc ttaatgattt
     2281 gatttttttc cccaaagaga gaatctacct gccccagttt tgacctgctt gcctaccagc
     2341 ttgagcaggt agctctttcc taacccagtg atggcctacc tgaccccgct ccatcccacc
     2401 cccaccctcc caaaacacac cacaccctac ctggctggca gcccagcctt cagagccgcc
     2461 caggacctgg ctcttcacgt gtgccctcgg gctccatgca cagcctcagg tccgccccac
     2521 ggattgtttg tttacgtagg gaagggtgaa gtacccccca ggtaggtccc agggagggca
     2581 tgccagctag gatgtccctt tcaggctgcg gcaggagccc ctccccccac tgctccacac
     2641 ccaccagggg gagacccacg ctgtgactca gggactggca agttcagctc agagcctcca
     2701 tttccctgga ggtacgtcct cacaaagctc catagcaagc tgtcttgcca agggacagct
     2761 gcggcgtcca gcccctgact ctgaccaccg tcactgtgcg ctcatcacct ccgcccctta
     2821 ctacccgtgc aggggctcct ttaggccctg gtgctaaatc actcgtagtt ggcagttaag
     2881 cgaggagagg gaatgggcaa gctgcagcat ctggggaaag gaaagtaggg agccgagctt
     2941 gtgatccaga atgatgccag cctggtctgt ttcttagatg gtttcagtgg gcttgcctgg
     3001 gcccgggccc aggggagcag ccgggccggg cgagcggagg cgccaagggg cagagccccg
     3061 cagcggcctt cagttcctgc atctgccttc ctgtatccac agcaaacctt tgcagagtgt
     3121 tcactctcgc ttttccccag tgtttagggt aaccagtcac cttgctatag ccaaggatga
     3181 cactgtcaaa tgctctttgt gtatgtgttc gcatgtaccc tttctggttt atgcattcca
     3241 caagtggtgc agtgtttgtt attactgtct taaaccaaaa ttggcttttg atatttgtca
     3301 cacacctgta cctgaaaaag taaacagcgt tcttgaatct acagccttca ggtcaacaag
     3361 aagatgtgtt ggaaaagcag gaaggagaaa ccagtcggta tggtgtgaag ccaagacata
     3421 ctatttaact acgtggtttc cgtttatgaa aaacacatac catgtaaccg tggtgctttt
     3481 gttcttctta gttttgcctt taggtccctt caagccggac attccttttg atgtctttct
     3541 caggaatata ttttgggaga ctgggcaagg gatggtgaat gtataagaga ctttggctgc
     3601 ataaaggtta tactgtccca gactaaatgt atcacaggct gctgcatcag aaacccggca
     3661 atagaagtgc catacgtgta tattcatctg gttaataacg acactatcca tcagctttct
     3721 aaaaaactgt gcttacaacc ctgtcttcaa ttaccagtcc agaaggggtt aagttggatt
     3781 catggctttg gtgcctgcct tcccagcggg gtgaagaaag gtttaaatta aggaatttct
     3841 tttctctctc tcccagtctt tgcataggag aatgtcagac tttgtgaaat tactgtttct
     3901 gttttaaatt gaatattgat ttttttacac tgactttgta ctgagtcctt ttcgaaagaa
     3961 caacgtaata aaatgcggga tctttgtatc aaggctttgc acttgccaac tcttcatagc
     4021 ctgagttact ggtacagtgg gaacaatgta aatggcattt ttttaaaaat gtaagttttc
     4081 agaaaagctg tctcatacag ttgaacacag tccttttcag ttcttgcagt caataagctc
     4141 ttcttttgaa aaggggtaaa ctgtgccctg ggctagtaga attagaagat aagttcacat
     4201 tagaggatac aagattttgt ttgcctgaaa tgtttataga ttttctataa ctttcaacct
     4261 gttattaaaa tgggaacgtt aaacagtaag gagtagaaaa acttaatgag gagtatatgt
     4321 ctgagattgt tctcttccct ggcgatgttt taaccagtag atagtttctg ttcttaagtg
     4381 tgtacttttg aagataatga caatttttaa tcgtccatga actaaacagt gaagtctgca
     4441 ttcatagagc tggaagggat tttaaggctt tgtgattgat ccatcctttg cattatcggt
     4501 taagtcaaaa cgtgtaatgg ttttgcgaaa gtttttaaag taagccctag agaaaatgct
     4561 tgactatttt ttgcccagct gtcatcatct cccttccttc ctctctgtcc tctgtctacg
     4621 cacaggacaa attctgtacg gccaacggat agaggaaagt ggccgtagta tatgtgtacg
     4681 tgtgtgttgt gctgcggttc attgccagag ctcggacctc ctttgcaatg gggagatggt
     4741 ggttgttcgg gtgtgtgttg ggtgggcatg aggtgctccg ctgtcttcac catagttggt
     4801 ggtggtcgag tactctcttt cttgtgtctc ctggtcactt tggtgtgcat gtatatagat
     4861 aagcctgtag ccctgtggga agccatgagc ctgttaggct gacagaaact gatgaccctg
     4921 cccctcctta ctttttcccg ggagagtgag tgtagcagcc gctcaatgaa atcagcaaaa
     4981 tcaagtcctt gtttactctc gtctgtgtga accctgctat ggaaggctcc ctacactggg
     5041 acgcacattt gtttgtgggt gtgtgtttct atatatgtga gcatttctct gagtgtaatt
     5101 accagatgga cggcatgttt atgttagcca tctgaacatc tgtgttatct gtaacagatg
     5161 ggtgtgtatc tcagcaaata acttgtggat gtgtttatat agatgagtgt gtgaaagtcc
     5221 atgtgtttct acatatgccc tgtgtttgag agatacccta acagcaccca tcttctggga
     5281 ggttactcta aagccagata cttctccctc cccgccttta ctcctccccc taggttacac
     5341 tggcttctcc ccaggagtaa atggctttag cacagcagtg tcttctggag agcctgctgt
     5401 cctgtaggca agtccattag actttcttgc ctcaggactt tatgacctga aaacagcaag
     5461 aaagaaaggt caagctccat gataatgact gctccaactt cactaccccg gaagccttac
     5521 catagatttc tcaatataac ttaaaaattg agcttcattt aaaaaaaaag attgattact
     5581 aaaagcagca cagaaatggt gccataatat tcaaatagtc cagcagagac cctgcagttg
     5641 taaagtggtg taagtatttc tgggtagtgt ttgtgctttg cgagtcttgt tttacaaaaa
     5701 ataaatcact actgtgaatt tactgctatg taaccctgtg gccataatcc attataaata
     5761 aaatatgagt tattcttaag cccatagcac agtttttgaa tggtattcag tgcagtagtg
     5821 aataaggtac cttaggcact acattgaaat ctccatattg agctttaacc aagtggatgc
     5881 ctagaaaatt agatttgggg tcacattttt gacaaaatat attttggtca aagaaggaag
     5941 agaagggtaa taagatgtat ctatcaggta tcgcatgtta ggcgttgtct tagaatgtga
     6001 attcctttaa ggtaggcgtt atctgaattt tacaggtaag aaaagggatg agcagagagg
     6061 gaggaacttg cttgaaatct catggctaat aaatgaaatt tcaaatctaa tgtttgatcc
     6121 caatccctca gtcactacct cgaagtatta cctaaataat ctggcatttt ctggatgtgg
     6181 aggagagacc tgaggatact taaccttgaa tcaaaagctg ggattggggg ttcgttggag
     6241 gcgaaatcac atctgttctt tgacctcggg tttgcaccag agctgtggct ccagggaagg
     6301 ctgctccgcc gtgctagcag atttctcagg aattttgatg gaaagaactt gaggatcctc
     6361 cttcccttag gaaaaccagc cctgctagcg ctgcacctgc tgtaggactc aggtgctatt
     6421 gttctggtag ccaccctttg cttctgtccc ctccccctcc actcccaccc tgctggcttg
     6481 ggcaggtgtg caccttgggg aagtgtgcag gggctgacct ggcctccctc tgatctgagg
     6541 aggcctcttc ctggtgtttt gtcaacatta tgccccaaca gcttccactg gttggggtgg
     6601 gagagggact gcctgcagcc cagcctaggg aggtttggga ctggagcccc tggcctccat
     6661 ccttgacttc atgttctcag caagcatttt gcatcccact atcttcccca catttgccct
     6721 ctagagtttt aatcactaga cataaaacag gactctgagc acactttttt ctctattcca
     6781 atgtcttgag gttttggttt agttgtgcat aaactacctt ctctcctgct gtttgctttc
     6841 agtagaggat aggaaaggaa agataacaca cctctcggca ttgctgctta ttaggaacga
     6901 gtaggacaca ttttcagagg gtaaataggg aatgtataac tactgaataa aattagattt
     6961 tagtactctg tgtccctttt accaggcctg tccctgtcta cttagataac ccaatttgtt
     7021 ttgtttcacc tgtaacataa atctcttcaa tgggttgttt tagagtctcc ccaacacagc
     7081 aacaggtttc cgacacctga agcagcacgg tgaaatgtta ctcccaatat ggcaccagga
     7141 atctacaatt gatatgtctc tcagcttgaa aacatcagtg ttttgtcctt gttttagtgg
     7201 gataaaaaca ctcttaagcc ttggggacaa atgtgaccaa ttcccaggct tttatcttga
     7261 gtgtctttgg cacttctttt ggcactgaaa taatacttgg ataaaaatat ttgtgcagtg
     7321 tctggttttg tatttgcttg tatttatctc agccttccct tgtgcacatg agctttcatt
     7381 ctgaaggagg tcatccttta ggagctttta aacccccaaa agccctcacc ttgggaaagc
     7441 ttcatgtctg aggccagaga ctcttgctca gggaattagt agtgggaccc gggcatctga
     7501 tctgcgggtg tcaagtctag ttcaattcat gttgtagcga atttaaacag ttaatacacc
     7561 atcaccattc caggggccag gtggagagag gtggcggtcg ctttgcattg gccagcgccc
     7621 ctcagttata gaaataatgg aatattcact tagtgttgat catcattcta aaaaaaaatc
     7681 cagactttgc tgagaagtcc ttctttttat aatggattca cagtaggctt taactaaata
     7741 gcagagtcct ctgggactcc taaattatga catgtttaaa aaacttgatt tccaagcagt
     7801 tgtttatgac aactattgca tagagtggag gacaccagcc aggatgaggg cagtggtgga
     7861 tactggctca ctggggtggt gaattaactc atgttgtgat gaccacttcc tcaacaaaga
     7921 tgcttgggag aagaccagag aggcaggagc caggtcttac tcaagggaag tttatttgac
     7981 catcgctttt gtgttgaaag gactttacat ttctggattt agaatccagt atcaacccag
     8041 caacttcagt gacaaaacca tctgtctatc tgatggggcc attactgttt gtgcaaagat
     8101 gtggccaggg gtctttttca ttctccctta ttagttaata ctgcactttg taaccagaag
     8161 gggaagtttt gctggttagc aaaatgcaca atcactagat atgtatgaca aagtctgagt
     8221 gtgacttcct gcataaactg ggtggtgggc tctattgaga cattgcaaac atgtgaatga
     8281 atgaattaca ctaccagcaa ccatctgccc aagtacattt acgtatattc ataagatgta
     8341 tgcagtgaag cctcttttca ttgtaacatc agtaacaatg ttagagtcta tgaggggcat
     8401 agtgtacctg gcatccaagt tattttgttc tcttttgggc ccccattcca attaattgta
     8461 aaacatttta catgttacat tttttatact gtaaaactcg gaaaataaac tgaaatccca
     8521 aattaca
//
LOCUS       XM_032650988            1949 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gap junction protein alpha 8 (GJA8),
            mRNA.
ACCESSION   XM_032650988
VERSION     XM_032650988.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1949
                     /gene="GJA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 Proteins, and 31%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763378"
     CDS             1..1347
                     /gene="GJA8"
                     /codon_start=1
                     /product="gap junction alpha-8 protein"
                     /protein_id="XP_032506879.1"
                     /db_xref="GeneID:116763378"
                     /translation="MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAELV
                     WGDEQSDFVCNTQQPGCENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHIRM
                     EEKRKERAAEELCQQSPGNGGGERSPVPADQGSIKKGSSSSKGTKFRLEGTVLRTYVC
                     HIIFKTLFEVGFIVGHYFLYGFRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLA
                     MASVSLLLNILEVSYLGLKRIRSAFKKPVEQPLGEIPEKSLHSIAVSSIQKAKGYQLL
                     EEEKIVSHYFPFTEVGMVEASPLSAKPFSQFEEKMGTGPLGDLSRAYQETLPSYAQVG
                     AQEGEGEGEGQPAEAGAEPEVEAEPEVGENRQEAERVSTEGQETLAVLEGEKMETPEV
                     GKEVEKQELTPEKVSKQGLPPEKAPSLCPELPGDDTRPLSRLSKASSRARSDDLTV"
     misc_feature    7..708
                     /gene="GJA8"
                     /note="Region: Connexin; pfam00029"
                     /db_xref="CDD:459638"
     misc_feature    799..999
                     /gene="GJA8"
                     /note="Gap junction alpha-8 protein (Cx50); Region:
                     Connexin50; pfam03509"
                     /db_xref="CDD:460951"
     misc_feature    <1279..1344
                     /gene="GJA8"
                     /note="Connexin 40 C-terminal domain; Region:
                     Connexin40_C; cl46284"
                     /db_xref="CDD:480624"
ORIGIN      
        1 atgggcgact ggagtttcct ggggaacatc ctggaggagg tgaatgagca ctccacggtc
       61 atcggccgcg tgtggctcac ggtgcttttc atcttccgga tcctcatcct tggcacggcc
      121 gcggagcttg tgtgggggga tgagcagtcc gacttcgtgt gcaacaccca gcagccaggc
      181 tgcgagaatg tctgctacga cgaggccttc cccatctccc acatccgcct ctgggtcctg
      241 cagatcatct tcgtctccac gccgtcgctg gtgtacgtgg ggcacgcggt gcaccacatc
      301 cgcatggagg agaagcgcaa ggagcgcgcg gccgaggagc tgtgccagca gtcgccgggc
      361 aacggtggcg gcgagaggtc tcccgtccca gcggaccagg gcagcatcaa gaagggcagc
      421 agcagcagca aaggcaccaa gttccggctg gagggtaccg tgctgaggac ctacgtctgc
      481 cacatcatct tcaagaccct ctttgaagtg ggcttcatcg tgggccacta cttcctgtac
      541 ggtttccgga tcctgcctct ctatcgctgc agcaggtggc cctgccccaa cgtggtggac
      601 tgctttgtgt cacggcccac cgagaaaacc atcttcatcc tgttcatgct ggccatggcc
      661 tctgtgtccc tcctcctcaa tattctggag gtgagttacc tgggcctgaa gagaatccga
      721 tcggccttca agaagccagt ggagcagcca ctgggggaga ttcctgagaa gtccctccac
      781 tccattgctg tctcctccat ccagaaggcc aagggctacc agctcctcga agaagagaaa
      841 atcgtgtccc attatttccc ttttactgag gttgggatgg tggaggccag cccactttct
      901 gccaagcctt tcagtcaatt cgaggagaag atgggcaccg ggcccctagg ggacttgtcc
      961 agggcctacc aagagacact gccttcctac gctcaggtgg gagcccagga gggggagggg
     1021 gagggggagg ggcagcctgc ggaggcggga gcagaaccag aggtggaagc agaaccagag
     1081 gtgggagaga acaggcagga ggcagagaga gtgagcacgg aaggccagga gaccctggcc
     1141 gtgctggagg gggagaaaat ggagaccccc gaagtgggga aggaggttga gaaacaagag
     1201 ctgacgcctg agaaggtatc aaagcagggg ctgccgcctg agaaggcgcc ttcactgtgt
     1261 ccggagctac ctggggatga caccagaccc ctgagcaggc tgagcaaagc cagcagccgg
     1321 gccaggtcag acgatctaac ggtatgaagc agtgccaaag gaaaaaagaa aagaaaacac
     1381 ccgagctaac ctatggcaag atgaaaccta aagttgccaa catgctttga gtcttctgtc
     1441 cctcccctca cacccaccct ggttggacag gcactgcggt agaaccgtgc atgccgtaca
     1501 actaggaaac tgcctttccc gtatataaag gctatccaga tgaacccatt gtcccgtcaa
     1561 agttcccagt ctcatgactg ccctgcccct ctatgccaca gggaattctg ctttcatccc
     1621 catgtcccca tagaaatcct tccaatcaga attgtgattg tctcatagct tttcaccagt
     1681 cttgtctcaa gctcacaaac tccgctgaac tttttcaccc cagcacttcc ctagcagaca
     1741 ccgtgtgaca tatatcaggg atcccaaact taagcgcact ggtgaagtgc gcctgttcta
     1801 atgccatggg agagctacgg ctgtggaatt tgggaagcag agggcaactg ctgctcattt
     1861 ccaggcagcg attaccagac agtgttacct ggccatctga tttttcaaga gaagccagaa
     1921 atccaaacgt ttaagtgaag tttcccact
//
LOCUS       XM_032651003            1545 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ribosomal RNA processing 15 homolog
            (RRP15), transcript variant X1, mRNA.
ACCESSION   XM_032651003
VERSION     XM_032651003.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1545
                     /gene="RRP15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 93% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763383"
     CDS             196..1188
                     /gene="RRP15"
                     /codon_start=1
                     /product="RRP15-like protein isoform X1"
                     /protein_id="XP_032506894.1"
                     /db_xref="GeneID:116763383"
                     /translation="MPKSLVLQPDATLTERFRLGIMAAAVRESRVSAGKKLKNSLKKK
                     GKMKMISPAAASELEDKDKDATDNEGSVGSCGSEKDRFSSGEEAVEADNEDEAEPCDD
                     GSENAVEASVGTNVGWADAMAKILNKKTPKSKPTILVKNKELEKEKEKLKQERLEKRK
                     QLDKKREWEMMCRVKPDVVKDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAG
                     GSIRKRAKLISTVSKKDFISVLRGMDGSTNEKSLTGKNSKAKQMSWKEGGLSGEPQCC
                     LPRLDRETEAKSEEGPGWAILRDNFMMGASMKDWDKGSDGPDDNRLGSGSDSDT"
     misc_feature    574..918
                     /gene="RRP15"
                     /note="Region: Rrp15p; pfam07890"
                     /db_xref="CDD:462305"
ORIGIN      
        1 acaagggcga gctggcagag gagtcggccg agaacgtata ttcactgatt tttattatta
       61 ttattgtttt ttactggagc agacagcacg taaagacaac caattagtcc tctttccaat
      121 ccatattgtg agcctccagc ccgagaactc ccggctaaat ggcaccgccc cggaaccttg
      181 tatcaccgga actagatgcc gaagtccctt gtgttacagc cggacgcaac gctcacggaa
      241 cgcttccggt taggaatcat ggccgcggcc gttcgagagt cacgtgtgag tgcggggaaa
      301 aagctgaaaa attcactaaa gaagaagggg aagatgaaaa tgatatcccc ggctgcagca
      361 tcggagctgg aagataagga caaagatgct accgataatg aaggttctgt aggaagctgt
      421 ggatcggaaa aggatcgctt ttcctctggt gaagaagcag tagaagctga caatgaggat
      481 gaagctgagc cctgtgacga tggcagtgaa aatgctgtag aagctagtgt tggaactaat
      541 gtgggctggg cagatgccat ggctaaaatc cttaacaaga agactcctaa aagtaaaccc
      601 accattctgg tcaaaaacaa ggagctggaa aaggaaaaag agaagttaaa gcaagagaga
      661 ctagagaaaa gaaaacagct tgataagaag cgggaatggg aaatgatgtg cagagtaaag
      721 ccagatgttg tcaaagacaa agaaacagag agaaatcttc agagaattgc aacgaggggt
      781 gtggtgcaat tatttaatgc tgttcaaaag catcagaaga acgttgatga aaaagttaaa
      841 gaagctggag gctctattag aaagcgtgct aagctgatat caactgtttc caagaaagat
      901 ttcatcagtg ttctcagagg gatggatgga agcacaaatg agaaaagttt gactgggaag
      961 aactcgaaag ccaaacagat gagctggaaa gaaggggggc tgtctggcga gccccagtgt
     1021 tgcctgccca gactagacag agagactgaa gcaaaatcag aagagggccc aggatgggct
     1081 atcctacgtg ataatttcat gatgggagca tccatgaaag actgggacaa aggaagtgat
     1141 ggaccagatg acaacagact ggggtctgga agtgactctg acacataaag ctatataaga
     1201 aacacagttt ccattttatt tttcctagaa aaatactcgt gctctgaaag ttggggaatt
     1261 ataaagatac catttgtaag agagccaaaa gacttttact attatcaact tcggtgtttc
     1321 tctttttcat gtaaacttgg ttaaaatgat atttcagacc ttgtataatt ttaagcattg
     1381 ttctttagaa cgtttgtaga aatatttcta cttgagatat gcattttgcc aagtacatta
     1441 taggcttacc tgttgctttt ggatattggt gttttattta agtatcacca agggttgtag
     1501 aaatgcaata tcaattcata attaaaatga actccttgaa gttaa
//
LOCUS       XM_032651014            1474 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ribosomal RNA processing 15 homolog
            (RRP15), transcript variant X2, mRNA.
ACCESSION   XM_032651014
VERSION     XM_032651014.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1474
                     /gene="RRP15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763383"
     CDS             174..1100
                     /gene="RRP15"
                     /codon_start=1
                     /product="RRP15-like protein isoform X2"
                     /protein_id="XP_032506905.1"
                     /db_xref="GeneID:116763383"
                     /translation="MPKSLVLQPDATLTERFRLGIMAAAVRESRVSAGKKLKNSLKKK
                     GKMKMISPAAASELEDKDKDATDNEGSVGSCGSEKDRFSSGEEAVEADNEDEAEPCDD
                     GSENAVEASVGTNVGWADAMAKILNKKTPKSKPTILVKNKELEKEKEKLKQERLEKRK
                     QLDKKREWEMMCRVKPDVVKDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAG
                     GSIRKRAKLISTVSKKDFISVLRGMDGSTNEKSLTGKNSKAKQTEAKSEEGPGWAILR
                     DNFMMGASMKDWDKGSDGPDDNRLGSGSDSDT"
     misc_feature    552..896
                     /gene="RRP15"
                     /note="Region: Rrp15p; pfam07890"
                     /db_xref="CDD:462305"
ORIGIN      
        1 gtcggccgag aacgtatatt cactgatttt tattattatt attgtttttt actggagcag
       61 acagcacgta aagacaacca attagtcctc tttccaatcc atattgtgag cctccagccc
      121 gagaactccc ggctaaatgg caccgccccg gaaccttgta tcaccggaac tagatgccga
      181 agtcccttgt gttacagccg gacgcaacgc tcacggaacg cttccggtta ggaatcatgg
      241 ccgcggccgt tcgagagtca cgtgtgagtg cggggaaaaa gctgaaaaat tcactaaaga
      301 agaaggggaa gatgaaaatg atatccccgg ctgcagcatc ggagctggaa gataaggaca
      361 aagatgctac cgataatgaa ggttctgtag gaagctgtgg atcggaaaag gatcgctttt
      421 cctctggtga agaagcagta gaagctgaca atgaggatga agctgagccc tgtgacgatg
      481 gcagtgaaaa tgctgtagaa gctagtgttg gaactaatgt gggctgggca gatgccatgg
      541 ctaaaatcct taacaagaag actcctaaaa gtaaacccac cattctggtc aaaaacaagg
      601 agctggaaaa ggaaaaagag aagttaaagc aagagagact agagaaaaga aaacagcttg
      661 ataagaagcg ggaatgggaa atgatgtgca gagtaaagcc agatgttgtc aaagacaaag
      721 aaacagagag aaatcttcag agaattgcaa cgaggggtgt ggtgcaatta tttaatgctg
      781 ttcaaaagca tcagaagaac gttgatgaaa aagttaaaga agctggaggc tctattagaa
      841 agcgtgctaa gctgatatca actgtttcca agaaagattt catcagtgtt ctcagaggga
      901 tggatggaag cacaaatgag aaaagtttga ctgggaagaa ctcgaaagcc aaacagactg
      961 aagcaaaatc agaagagggc ccaggatggg ctatcctacg tgataatttc atgatgggag
     1021 catccatgaa agactgggac aaaggaagtg atggaccaga tgacaacaga ctggggtctg
     1081 gaagtgactc tgacacataa agctatataa gaaacacagt ttccatttta tttttcctag
     1141 aaaaatactc gtgctctgaa agttggggaa ttataaagat accatttgta agagagccaa
     1201 aagactttta ctattatcaa cttcggtgtt tctctttttc atgtaaactt ggttaaaatg
     1261 atatttcaga ccttgtataa ttttaagcat tgttctttag aacgtttgta gaaatatttc
     1321 tacttgagat atgcattttg ccaagtacat tataggctta cctgttgctt ttggatattg
     1381 gtgttttatt taagtatcac caagggttgt agaaatgcaa tatcaattca taattaaaat
     1441 gaactccttg aagttaatat ttttcagcct ctaa
//
LOCUS       XR_004352500            1090 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763388
            (LOC116763388), transcript variant X1, ncRNA.
ACCESSION   XR_004352500
VERSION     XR_004352500.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1090
                     /gene="LOC116763388"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 87% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763388"
     ncRNA           1..1090
                     /ncRNA_class="lncRNA"
                     /gene="LOC116763388"
                     /product="uncharacterized LOC116763388, transcript variant
                     X1"
                     /db_xref="GeneID:116763388"
ORIGIN      
        1 cccacccctc cctcccacct agctccgccc cgcccgctca aggcgtcaga ccgcgcggtg
       61 gagaccgaga aaacggcagc tctgccctcc gcggactgct cctgcctccc tcccggggcc
      121 agcttctccc tgagcttggc tgatgtgaga gcattgaaga gctttgaact actggacatg
      181 gaacagatga gaaggagaga tctttccatc atctccctcc tagcctgtct cccaagggcc
      241 tccaacaaat caccgtgtgt tctggaaatg caaaaccact ggaataatcg ccatatcaag
      301 atgaaatgag aaagaccaaa tgctcactgg aggggagtga tatgctgacc aaagacatcc
      361 ccaaacatga agctgtcctg ctgggactgt cctgccagtg gttgttttcc ttcctgccat
      421 ctcaaatact cccaacccca aagcaaagag cccctctgca caaagggtga gattgcgtcc
      481 cagctgtggc cataacaggg acatcgatcc tcatctgttc cccaccactg aattctccac
      541 tgcaggttag aaacaagcaa tgcagcctcc gctaccagcg acaccggcgg gacctggctt
      601 ttagaagtaa gattgaatgg ctattagaag aggtgacggc tataacctaa cactgtacag
      661 agagaccaag gtaatgaagt aacacaggtt tgtagaatgt ggagacctgg aaggctcttt
      721 agacatcatt ctggccaacc cctttgcttt acaggtgaag aaaaccagga ccgaagaggt
      781 taattgactc atccaaggtc gtagtgtgaa ttattgtcct ttggttgttc aggtcaccct
      841 taaacaaaaa tttttttccc aaggtttcta agagttcaga gttcgtagtc catcagcttt
      901 aatagtttaa atgcttccct ttagaactca ttcatcggcg gtgaatcatg gggacctatc
      961 atgaacatgc cccacatgtt ataggtgatt aaagaagggg aaagaggttt ctgcacctaa
     1021 tatcttacaa ttgaattgga gacttaagaa atataaatag caagaggaaa aatgaaattc
     1081 ttatgtatgt
//
LOCUS       XR_004352501             830 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763388
            (LOC116763388), transcript variant X2, ncRNA.
ACCESSION   XR_004352501
VERSION     XR_004352501.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..830
                     /gene="LOC116763388"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116763388"
     ncRNA           1..830
                     /ncRNA_class="lncRNA"
                     /gene="LOC116763388"
                     /product="uncharacterized LOC116763388, transcript variant
                     X2"
                     /db_xref="GeneID:116763388"
ORIGIN      
        1 cccacccctc cctcccacct agctccgccc cgcccgctca aggcgtcaga ccgcgcggtg
       61 gagaccgaga aaacggcagc tctgccctcc gcggactgct cctgcctccc tcccggggcc
      121 agcttctccc tgagcttggc tgatgtgaga gcattgaaga gctttgaact actggacatg
      181 gaacagatga gaaggagaga ccaaatgctc actggagggg agtgatatgc tgaccaaaga
      241 catccccaaa catgaagctg tcctgctggg actgtcctgc cagtggttgt tttccttcct
      301 gccatctcaa atactcccaa ccccaaagca aagagcccct ctgcacaaag ggtgagattg
      361 cgtcccagct gtggccataa cagggacatc gatcctcatc tgttccccac cactgaattc
      421 tccactgcag gttagaaaca agcaatgcag cctccgctac cagcgacacc ggcgggacct
      481 ggcttttaga agtaagattg aatggctatt agaagaggtg acggctataa cctaacactg
      541 tacagagaga ccaaggtaat gaagtaacac aggtttgtag aatgtggaga cctggaaggc
      601 tctttagaca tcattctggc caaccccttt gctttacagg tgaagaaaac caggaccgaa
      661 gaggttaatt gactcatcca aggtcgtagt gtgaattatt gtcctttggt tgttcaggtc
      721 acccttaaac aaaaattttt ttcccaaggt ttctaagagt tcagagttcg tagtccatca
      781 gctttaatag tttaaatgct tccctttaga actcattcat cggcggtgaa
//
LOCUS       XM_032651038            6597 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SKI proto-oncogene (SKI), mRNA.
ACCESSION   XM_032651038
VERSION     XM_032651038.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 38% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6597
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6597
                     /gene="SKI"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 2 Proteins, and
                     77% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763390"
     CDS             1..3768
                     /gene="SKI"
                     /codon_start=1
                     /product="ski oncogene"
                     /protein_id="XP_032506929.1"
                     /db_xref="GeneID:116763390"
                     /translation="MVSDLPLGALRASYAAFQKEPGSCRPTLGLGLAATWMQALPWNW
                     WEAQRLAVCGDHLAGSWGGRPCGQSSLGGVVSRLHRSGVPRTGCMMPVSRVGSPRCCN
                     PNVCSNPHRAARCPCPMWDVDRLARRPRCLRGDPGGEVGGGGCAAPSRPPLSCSAVVV
                     GTLCGFLGSGGDAAAGRAPSQPRRKLPPPDGGPGAQPPPPPPPSGLPAGGPERSRTGL
                     SPGRAGPSGAERSRAEPSSGRACPSAAERARVPGRRAGPSTAECGGAPIRAGASRRED
                     VRRAPRRRRRRGLRPPHRRSAVPEAARARARAGGQAAEPGAGGGVGAGRAGRPAAGAT
                     RPASAAGTSRAGAARWEERGGGGGAPREDGPAGPAPAPPLLPGPSASVAAAIRASRRR
                     HLPARPPRAPGPRALALALAARAGACPAPRARGARGGRAGGPGGGGGGRGAGRVDVAP
                     GPGGGGLQRRDPFAPPAFPFAPPGEAEAAAVIGREPAAGGGRGRGRGRRRGARGSGGG
                     RGGPGARERERPGEPERTMEAAAGGRGGFQPHPGLQKTLEQFHLSSMSSLGGPAAFSA
                     RWAQEAYKKESSKEAGAAAVPAPVPAAAEPPPVLHLPAIQPPPPVLPGPFFMPSDRST
                     ERCETVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINSVCDELHIYCSRCTAD
                     QLEILKVMGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALGLELS
                     ERSVRVYHECFGKCKGLLVPELYNSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTC
                     HWGFDSANWRAYILLSQDYTGKEEQARLGRCLDDVKEKFDYGNKYKRRVPRVSEPPAS
                     VRKADDAPSQHPTPSEKDKQSGWLRTLAGSSSKSLGCIHPRQRLSAFRPWSPAVSASD
                     KELSPHLPALIRDSFYSYKSFETGVAPNVALAPPAQHKVASSPPCATVVSRAPEPVTS
                     CIQPRKRKLTVDTPGAPETPAPGPAPEEEKDSEAEVEVEGREEFTSSLSSLSSPSFTS
                     SGSAKDLSSPGLLALPAAPGAPDAAAPADALSSGLEAELEHLRQALEGGLDTKEAKEK
                     FLHEVVKMRVKQEEKLSAALQAKRSLHQELEFLRVAKKEKLREATEAKRSLRKEIERL
                     RAENEKKMKEANEARLRLKRELEQARQARVCDKGCEAGRLRAKYSAQIEDLQVKLRHA
                     EADREQLRADLLREREAREHLEKVVKGLQEQLWPRPRSEPTGGESTAELEP"
     misc_feature    1849..2154
                     /gene="SKI"
                     /note="Dachshund-homology domain found in Ski and similar
                     proteins; Region: DHD_Ski; cd21083"
                     /db_xref="CDD:410786"
     misc_feature    2227..2511
                     /gene="SKI"
                     /note="c-SKI Smad4 binding domain; Region:
                     c-SKI_SMAD_bind; pfam08782"
                     /db_xref="CDD:462602"
     misc_feature    <3193..>3708
                     /gene="SKI"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 atggtctccg acttgccatt gggggccctt cgagccagct acgcggcctt tcagaaggag
       61 ccaggttcct gcagacccac cctgggcctg ggcctggcgg cgacctggat gcaagccctg
      121 ccctggaact ggtgggaggc ccagcggctg gctgtgtgtg gggaccacct tgcagggtca
      181 tggggtggcc ggccctgcgg ccagtcatcc cttgggggtg tcgtgtcgcg cctgcatcgc
      241 tcgggggtcc ccagaacagg ctgcatgatg cctgtgtccc gtgtggggtc tccgaggtgc
      301 tgcaatccca acgtgtgtag taacccacat cgtgctgctc ggtgtccctg tcctatgtgg
      361 gacgtggatc gtctggcccg gcgtccccgt tgcctgcgtg gggaccccgg gggggaggtg
      421 ggcggtggag ggtgtgccgc cccgtcccgt ccgccactca gctgctctgc ggttgtagtg
      481 gggaccttgt gtgggtttct gggctctggc ggcgatgcgg cggcgggtcg ggcgccttcg
      541 cagcctcgca ggaagctgcc gccaccggat gggggacccg gggcgcagcc gccgcccccg
      601 cccccgccga gtggccttcc ggcgggcggg cccgaacgga gccgaacggg gctgagtccc
      661 ggacgggcgg ggccgagcgg agccgagcgg agccgagcgg agccgagtag tggccgggcg
      721 tgcccgagcg cagccgagcg ggcccgagtc ccgggccggc gggcgggccc aagcacggcc
      781 gagtgcggcg gagcgccgat ccgagctgga gcgagccgcc gggaggatgt acgccgagcc
      841 ccgcgccgcc gccgccgccg cggtctgagg ccgccccaca ggcgctccgc cgtcccggaa
      901 gccgcgcgcg cgcgcgcgcg agcgggcggg caggccgcgg agccgggcgc gggcggcggg
      961 gtgggcgcgg gccgggccgg gaggccggcg gcgggcgcga cgcggccggc cagcgccgcc
     1021 gggacgagcc gggcgggcgc cgcgcggtgg gaggagcggg gcggcggcgg cggcgcgccg
     1081 cgcgaggacg gcccggcggg ccccgcgccc gcgcccccgc tcctcccggg cccctcggcc
     1141 tcggtcgccg cggcgattcg cgcctcgcgg cgccggcacc tgcccgcgcg ccccccgcga
     1201 gccccgggcc cgcgagcgtt ggcgttggcg ttggcggcgc gcgctggggc atgccccgcg
     1261 cctagggccc ggggggcgcg cggggggcgc gcggggggcc cgggcggcgg cggcggcggg
     1321 cgcggcgcgg ggcgcgtgga tgtggcgccg ggcccgggcg gcggcgggct ccagcggcgg
     1381 gaccccttcg ccccgcccgc cttcccgttc gctccgccgg gcgaggccga ggccgcggcc
     1441 gtgatcggcc gggagccggc ggcgggggga ggccggggcc ggggccgggg gcgccgccgg
     1501 ggcgcgcggg gcagcggcgg gggccgcggg ggcccgggcg cgcgggagcg ggagcggcct
     1561 ggggagccgg agcgcaccat ggaggcggcg gcgggtggcc gcggcggctt ccagccgcac
     1621 ccggggctgc agaagacgct ggagcagttc cacctgagct ccatgagctc gctgggcggc
     1681 ccggccgcct tctcggcgcg ctgggcgcag gaggcctaca agaaggagag ctccaaggag
     1741 gcgggcgcgg ctgcggtgcc ggcgccggtg cccgcggctg ccgagccgcc gccggtgctg
     1801 cacctgcccg ccatccagcc gccgccgccc gtgctgcccg ggcccttctt catgccgtcc
     1861 gaccgctcca cagagcgctg cgagaccgtg ctggagggcg agaccatctc gtgcttcgtg
     1921 gtgggcggcg agaagcgcct ctgtctgccg cagatcctca actcggtgct gcgcgacttc
     1981 tcgctgcagc agatcaactc ggtgtgcgac gagctgcaca tctactgctc gcgctgcacg
     2041 gccgaccagc tggagatcct caaagtcatg ggcatcctgc ccttctcggc gccctcgtgc
     2101 gggctcatca ccaagacgga cgctgagcgc ctgtgcaacg cgctgctgta cggcggcgcc
     2161 tacccgccgc cctgcaagaa ggagctggcg gccagcctgg cgctgggcct ggagctcagc
     2221 gagcgcagcg tgcgcgtgta ccacgagtgc ttcggcaagt gcaaggggct gctggtgccc
     2281 gagctctaca acagcccgag cgccgcctgc atccagtgcc tcgactgccg cctcatgtac
     2341 ccaccgcaca agttcgtggt gcactcgcac aaggccctgg agaaccggac ctgccactgg
     2401 ggcttcgact cggctaactg gcgggcctac atcctgctca gccaggacta cacgggcaag
     2461 gaggagcagg cgcgcctcgg ccgctgtctg gacgacgtca aggagaagtt cgactacggc
     2521 aacaagtaca agcggcgggt gccccgggtc tccgagcccc cggcctccgt aagaaaagca
     2581 gacgatgccc cctcccagca ccccacaccc tccgagaagg acaagcagtc tggctggctg
     2641 cggactctgg ccggctcctc cagcaagagc ctgggctgca tccaccctcg ccagcgcctc
     2701 tctgccttcc gaccctggtc ccctgcggtt tctgcgagtg acaaagagct ctccccacac
     2761 ctcccagccc tgattcgaga cagcttttac tcctacaaga gttttgagac gggcgtggcc
     2821 cccaacgtgg ccctagcacc gccagcccag cacaaggtgg cgagcagccc gccctgcgcc
     2881 acggtcgtct cccgggcccc cgagcccgtc accagctgca tccagcctcg gaagcggaag
     2941 ctgacagtgg acacccctgg agccccggag acgccggcac ccgggcctgc ccccgaggag
     3001 gagaaggact cggaggccga ggtggaggtg gagggaagag aggagttcac ctcctcgctg
     3061 tcctcgctgt cctccccgtc ctttacctca tccggctccg ccaaggacct gagctccccg
     3121 ggcctgctcg ccctgcctgc ggcgcccggc gcccccgatg ccgcggcccc cgccgacgcc
     3181 ctgagcagcg ggctggaggc cgagctggag catctgcggc aggccctgga gggcggcctg
     3241 gacaccaagg aagccaaaga gaagttcctg cacgaggtgg tgaagatgcg cgtgaagcag
     3301 gaggagaagc tgagcgccgc gctgcaggcc aagcgcagcc tccaccagga gctggagttc
     3361 ctgcgcgtgg ccaagaagga gaagctgcgg gaggccacgg aggccaagcg cagccttcgg
     3421 aaggagatcg agcggctccg ggctgagaat gagaagaaga tgaaggaggc caacgaggcg
     3481 cggctccgcc tgaagcggga gctggagcag gcgcggcagg cgcgcgtgtg cgacaagggc
     3541 tgtgaggccg gccgcctgcg ggccaagtac tcggcccaga tcgaggacct gcaggtgaag
     3601 ctgcggcacg cggaggccga ccgcgagcag ctgcgggctg acctcctgcg ggagcgggag
     3661 gcccgggagc acctggagaa ggtggtgaag gggctgcagg agcagctgtg gccacggccc
     3721 cgctctgagc ccacgggcgg cgagagcacg gccgagctgg agccctagcc ggacccactg
     3781 tctgctgcgc ggggcggacg ccgcagggcg ggcggcgggg ctgggggctc cgtgctggcg
     3841 gggccgctcc ccaccccccc cggccccccc agccccggtc catatagcac cacatcttac
     3901 tgtgcctaga accaagcaag cgtttggaac cacatatttt ggaatccact gcaaaatttt
     3961 ctactggcca aggtcaagcg agcaagccgg tccccaaccg cagccggagt cgaggccagc
     4021 tcggtagctg cagctggccc tccgcttgcc ggatcgttta acatttacac ttttgtgata
     4081 agctatttaa aacccataag gagacttgat attcaaagaa atcgacacgt tttttaatga
     4141 ctaactttta aaagccccac ccacacgcga cgccacctga ggacccgcca gggagccagg
     4201 gtggcagccg ccctgcccct cgaagccatc acagctcatc ccgcgcccgc ggccgcgtga
     4261 caacacaaag ggtttttctc cagagtctat tttttcagcc acaaggaacc ccttctcccg
     4321 tgctgccacc gggaagggca cggagagcac cgcgcaggca cgatgagctg gaacgctgcc
     4381 gccttacccg cccgccgctc cggcccgcct tccacaggtg tgtccgcagg tgtgctcgga
     4441 ggcgacggga gatgggtccg cgctggctgg gcacacgcgc cctcgaccag gcaaccctct
     4501 caattcggca aacgttgctc cttctgttcg gggactgagg ctgcagcgtt ggaacaaaac
     4561 agcattactt cacttcttgt ttgttcgttc atttaaacgt atatttagaa ctgcactttg
     4621 tcaaaaatct tccctgctct ttttattccc cggttaactg aggtttttac tttcaaatac
     4681 tgcaaaccga tttatagagc attcacatcc taagtgctca agtgtttaga aacccctctg
     4741 gtgcttggtt gaacaaggga atcacacgaa aacgaaaatg caaaaactga acttcggggg
     4801 gtagttctgt gccttccagc atcttgtaca gcaaaccctg acttgtcttt ttacccccaa
     4861 aatatgtctt cagtagctat cgaatctgcc actatcacag ttacttgcat ttattccaaa
     4921 taatctcgtt tactctcaac tgtatgcgaa ttgtataagg tttcttaacg cccaagcttg
     4981 aaaaatgatt tcccagtaga cgaggtggcc gcccgtccta aaatcatggt atttatttac
     5041 atggagagat cttaccagaa ccctctgccc gactccgttc cagcaccccg gcagctgcga
     5101 gcgtggccgg gggtggtgcc gcaaccgccg agtggagcgg agaccgggtg acggcatcgt
     5161 cggtggggtt ttgcccttgg tttactgggt gggggccggg tgctgccggc ctcccttcta
     5221 aagtgcaatg caaaagggac atcgtgtata tgcagcgttt gtttggttgt tgttgtttgt
     5281 ttctttttta atttttttgc ttctgttttt ctttgcagtt attaaatctg tatgcatgga
     5341 atttaaagcc tctgccatgc gtatatccac cgatgggcat tattaccgtg tcgtgtagag
     5401 ggtcggttgt gtcacgcaac actcagaatg ctgtgtttag ctttgttttt ccagagttgt
     5461 gtttttgcgg tcatttcttc aagggaaagt aaatgattta gttggagcaa agcgttgagc
     5521 gtgtgtcagt gtgcttctgt gcggctgtgc tctgttgcca agtctgaaaa tgcgtagtga
     5581 ggtcgcgggg cccccgggac ccgcccgagg ccacctgctt tgctccgttt actttctgag
     5641 tttttaggct ccagagggag atacgttttt ccaagttgcg agtgggggcc gctgcgcctc
     5701 ctggcccgtg ccctgtcccc tccggtcacc cgcacgtctc ggccatcggg tctacgccgc
     5761 cactgtccgg cttggtcccc agatgtcggg aagagctgga ggtggggtgg tggacccagg
     5821 cccgccccga ggtcccttgg cctgccagcg ccgtcggcgg cccctgggcg aggccggcca
     5881 tggggctgtc cacgcttgtc ctcgggggca gggtccccgg gctcctgccg tgcggccgca
     5941 gttggagttt cttttctgaa gaggcactct cccgtaggct gttgactctc cccgtgtgta
     6001 atacccatta tcgaagtgat cgtgtattca gtttaatcac tcattatttc tatgctgaaa
     6061 gaagactttt aacgaaggga aaaaacaaca gcaataacat tcatatctat ggagcagcta
     6121 actcactcac atgatttctt gcttttcgta cagaactcgc cgatgtacaa agcgaccatg
     6181 taaatacttt ttcctctgat actcgtgtat catacgtata cgtggtgggt cctttgccgg
     6241 gactctcttc ttacctggta gctgtcttgt tttctgggtt atttctacct gaggcagaac
     6301 acgcccaccg gctcgagccg gttttctggg cgacaccgcc cgccgcgccc actaggctcg
     6361 gggaggccgt cttgttcttg ctttaagtca ggagtcacaa atgacacttt ttctttcaat
     6421 taaggaaaaa aaccacagct ccgcctcgta cccgccggga gcgtctgcgt caccgtcccc
     6481 ttctctcctt cgctgctgct aacgacagta tgacgactta ctcactattc gagaactatt
     6541 tttatgtaat taatgtatgc tttcttgttt ataaatgcct gatttaaaaa gaaaaaa
//
LOCUS       XM_032651049            3172 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sphingosine-1-phosphate receptor 1
            (S1PR1), transcript variant X1, mRNA.
ACCESSION   XM_032651049
VERSION     XM_032651049.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3172
                     /gene="S1PR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 16 long SRA reads, 22
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116763398"
     CDS             439..1806
                     /gene="S1PR1"
                     /codon_start=1
                     /product="sphingosine 1-phosphate receptor 1 isoform X1"
                     /protein_id="XP_032506940.1"
                     /db_xref="GeneID:116763398"
                     /translation="MTPVCCGFFPDSLFVICLRLRFLRLSPATEKLHKKAWISLAQPP
                     PLPVKALSASPSSVHLEKYRPGLLGTARIMGSTNIPLVKALRSSVSDYVNYDIIVRHY
                     NYTGKLNIGADKENGIKLISVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNL
                     ALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYIT
                     MLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCISTLPSCSTVLPLYHKHYI
                     LFCTTVFTLLLLSIVILYCRIYSLVRTRSRRLTFRKNISKASRSSEKSLALLKTVIIV
                     LGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGTNPIIYTLSNKEMR
                     RAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDGDNPETIMSSGN
                     VNSSS"
     misc_feature    793..1623
                     /gene="S1PR1"
                     /note="sphingosine-1-phosphate receptor subtype 1 (S1PR1
                     or S1P1), also called endothelial differentiation gene 1
                     (Edg1), member of the class A family of
                     seven-transmembrane G protein-coupled receptors; Region:
                     7tmA_S1PR1_Edg1; cd15346"
                     /db_xref="CDD:320468"
     misc_feature    796..876
                     /gene="S1PR1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320468"
     misc_feature    895..972
                     /gene="S1PR1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320468"
     misc_feature    order(958..960,970..972,1015..1020,1027..1032,1039..1041,
                     1237..1239,1273..1275,1462..1464,1483..1485,1537..1539,
                     1546..1548)
                     /gene="S1PR1"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:320468"
     misc_feature    1006..1098
                     /gene="S1PR1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320468"
     misc_feature    1129..1191
                     /gene="S1PR1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320468"
     misc_feature    1249..1338
                     /gene="S1PR1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320468"
     misc_feature    1402..1494
                     /gene="S1PR1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320468"
     misc_feature    1525..1602
                     /gene="S1PR1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320468"
ORIGIN      
        1 aggctcttcg aaggagagac cagaagctgg tggtgagccc gccgccgagc gggtgaacgc
       61 ttcagagact ctttcgactg cggctggaaa ccttgtgggg tgggagcagc gttgggcgga
      121 ggtggggggg gggggttgag gaggcaagag tggggataaa tggggttcac ttttccaatt
      181 ttcccatttt ccatttaagt ggatgtaacc atagggggcg attttcgtct tgtcgcgtcg
      241 gaattttcag tttgggtaca tttttgtttt ttctcctttt ctttcttccc cttcttcctt
      301 tttttttttt tttctttgca agaaatgaga gtttgatttc ttttttgttt tctttaatcc
      361 ttcttcctgc actctcccca agtttcttta aaacaaatca acagcaagaa aactggagca
      421 gtacctttct tagaatgaat gacgccagtg tgctgtggct ttttccctga ctctctcttt
      481 gtgatttgtt taaggctgcg gtttctgagg ctctctccag ccacggaaaa gctgcacaaa
      541 aaagcctgga tctctctcgc tcaaccaccc ccgctgccag tgaaggctct ctccgcctcg
      601 ccctctagcg ttcatctgga gaagtaccgc cccgggctcc tggggacagc gcgcatcatg
      661 gggtccacca acatccctct ggtcaaggcc ctccgcagct ctgtctccga ctatgtcaac
      721 tacgacatca tcgtccggca ttataactac acgggaaagc tgaatatcgg cgcggacaag
      781 gaaaacggca ttaaactgat ctcagtggtg ttcattctca tctgctgctt tatcatccta
      841 gagaacatct ttgttttgct gaccatttgg aaaaccaaga agttccaccg acccatgtac
      901 tattttattg gcaacctcgc cctctcagac ctgttggcag gagtggctta cacagccaac
      961 ctgcttttgt ctggggccac cacctacaag ctaacccccg cccagtggtt tctgcgggaa
     1021 gggagtatgt ttgtggccct gtctgcctcc gtgttcagcc tcctagccat tgccattgag
     1081 cgctatatca ccatgctgaa gatgaaactc cacaatggga gcaacaggtt ccgctccttc
     1141 ctgctcatca gtgcctgctg ggttatctcc ctcatcctgg ggggcctgcc catcatgggc
     1201 tggaactgca tcagcacgct gcccagctgc tccacagtgc tgccgctcta ccacaagcac
     1261 tatatcctct tctgcaccac ggtcttcact ctgctccttc tctccatcgt catcctgtac
     1321 tgcaggatct actccttggt caggactcgg agccgccgtc tgactttccg caagaacatt
     1381 tcgaaggcca gccgcagctc tgagaagtcg ctggcactgc tgaagaccgt gattatcgtc
     1441 ctgggcgtct tcatcgcctg ctgggcgcca ctcttcatcc tgcttctgct ggacgtgggc
     1501 tgcaaggtga agacctgcga catcctcttc agaacggagt acttcctggt gttggctgtg
     1561 ctcaactctg gcaccaaccc catcatttac actttgtcca acaaggagat gcgtcgggcc
     1621 ttcgtccgga tcatgtcctg ctgcaagtgc cccagcggag actccgccgg caaattcaca
     1681 cgacccatca tcgccggcat ggaattcagc cgcagtaagt cagacaactc ctcccaccct
     1741 cagaaggatg atggggataa cccagagacc attatgtctt ctggaaacgt caactcttct
     1801 tcctaaaagt gaaaactgct gacccatggg gagcttgcat ggttgcccac caccccagtg
     1861 tttggaaaaa aacccaacaa ctctgtgcct ctgctgctgc caggcaggag ctgtctcaag
     1921 ccagagggag ggagggggag cttaagaaca gcctggtggt gcctggtgtt ggtgggtaga
     1981 cttagttcct gtgaacaatg cactgggaag ggtggagatc aggtcctcgc ctggaatcta
     2041 tttcctcccc tcgctggagc tttgattttg cactgagcca aaggtctagc attgtcaagc
     2101 tcctgaaggg ttcatctggc ccctcctcaa agactaatgt ccccgtgtga aagcgtctct
     2161 gttgggagct ttgaggagat gttttctttc actttagttt ccagcccaag tgagtgtgtg
     2221 cacttctgct tcgctaggta tgctctgcat atcctaccct cccttcccct tcacacccct
     2281 cctcagaatt cctttacttt atattttaac tacctggcat tcagagttgg gagtgtggca
     2341 cggtccattt cttgatgatg tgtagcaggt aggctgtgtc cagcaggtag actgtggtgg
     2401 agatggtttg gaaatgtaaa gcaatttcac ttgcggaagc caaagtttcc acgtaagctg
     2461 gatgagtggt tttgatttta gttgcagtca ctttaaaaaa aaaaaaaaaa cctttgcaat
     2521 gaaatgtatt acagtatatc caccatggct gaaaactgca ttaggaagtc caatttattt
     2581 aaatgacatc agccaggatc cttagtgtca taggagaaac aaacaagcaa aacaaggtga
     2641 aaactgactg gggggtgact ttgtaaacca agaaagattt cttaacgaat ttgtctaaca
     2701 aatacagcat ctgtctttgg cactttcgtt gatgtttctt tcagagtgtt gtgtgaatca
     2761 tttcaaccaa caggatggct gtattttgtt gtgttaaaag tactttttta ataatttttg
     2821 aatgtatttg tttcaacatt ttattggatt ttcctaacct gtgttaacac cattgaatgt
     2881 gtatttcttc agaaaatacc atcctcttgt gcccttaaag cattacttta actgataggg
     2941 aacataagaa gtttttcagt acattaaata gttaattgaa gatgtgtata aatgtcgcaa
     3001 agaataaaaa tatattggtg tctgtttagt gtggtttcca gtgcaattaa accgagaaat
     3061 gtcttttttt aaaaaaaaaa aatagtattt aataggtttc tgacaatgtg gatcattttg
     3121 cacatagctt tatcaacttt taaacattaa taaactgatt tttttttaaa ga
//
LOCUS       XM_032651059            3431 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sphingosine-1-phosphate receptor 1
            (S1PR1), transcript variant X2, mRNA.
ACCESSION   XM_032651059
VERSION     XM_032651059.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3431
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3431
                     /gene="S1PR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 mRNAs, 23 long SRA reads, 22
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763398"
     CDS             917..2065
                     /gene="S1PR1"
                     /codon_start=1
                     /product="sphingosine 1-phosphate receptor 1 isoform X2"
                     /protein_id="XP_032506950.1"
                     /db_xref="GeneID:116763398"
                     /translation="MGSTNIPLVKALRSSVSDYVNYDIIVRHYNYTGKLNIGADKENG
                     IKLISVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL
                     LLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNRFRS
                     FLLISACWVISLILGGLPIMGWNCISTLPSCSTVLPLYHKHYILFCTTVFTLLLLSIV
                     ILYCRIYSLVRTRSRRLTFRKNISKASRSSEKSLALLKTVIIVLGVFIACWAPLFILL
                     LLDVGCKVKTCDILFRTEYFLVLAVLNSGTNPIIYTLSNKEMRRAFVRIMSCCKCPSG
                     DSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDGDNPETIMSSGNVNSSS"
     misc_feature    1052..1882
                     /gene="S1PR1"
                     /note="sphingosine-1-phosphate receptor subtype 1 (S1PR1
                     or S1P1), also called endothelial differentiation gene 1
                     (Edg1), member of the class A family of
                     seven-transmembrane G protein-coupled receptors; Region:
                     7tmA_S1PR1_Edg1; cd15346"
                     /db_xref="CDD:320468"
     misc_feature    1055..1135
                     /gene="S1PR1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320468"
     misc_feature    1154..1231
                     /gene="S1PR1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320468"
     misc_feature    order(1217..1219,1229..1231,1274..1279,1286..1291,
                     1298..1300,1496..1498,1532..1534,1721..1723,1742..1744,
                     1796..1798,1805..1807)
                     /gene="S1PR1"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:320468"
     misc_feature    1265..1357
                     /gene="S1PR1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320468"
     misc_feature    1388..1450
                     /gene="S1PR1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320468"
     misc_feature    1508..1597
                     /gene="S1PR1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320468"
     misc_feature    1661..1753
                     /gene="S1PR1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320468"
     misc_feature    1784..1861
                     /gene="S1PR1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320468"
ORIGIN      
        1 ctctcctccc ccagaacgca gccgggactc gcggggtcgc ggcgcctgtt tcccctgcct
       61 ccgcagacgc ggccggggcc ggagaggagg gcggagcccg gccacaatca ccggactcca
      121 atcccccaag ggctgcgggg ctgggggacc agagaggtgc actacccacg ccaggccgtc
      181 ctctgtccct taagactttt ctggagaaaa gcttccaaca gctcttcacc tcctcccttt
      241 tctaaggcgc gggagaacgg tctccaccgc ccaggagcgg cggatttcag cgcgagggcc
      301 gagatttata cattaagagt cctgggggca ccaggctccg ccccttttcg ggtttttttt
      361 tttctttctt tttttggttg cctgtgggga aggaggggtt cttcttgtat gtgtgtttct
      421 gccccagatc tttcctggac agtgagtctc agcagcactg atcacggtct tcagccgcgg
      481 gcggagggcg tgtggggttg aggcactcac tcctccctgt ctcttcctaa agaagccact
      541 cagcctcagc ggggcgctcg gcgacttcag ctgaccggtc ggccgggccg cggcgagcgc
      601 gctggccatt ggagtgcgcg gctgcggagg gaggggaccc cgactcgagt aagttgagaa
      661 cgcggcgcgc tcagtcgggg gcagcagcaa gatgccgagc gtgccgtgca gacccggagc
      721 tccccgaacg cagcttcgtc cagcctgagc caggctgcgg tttctgaggc tctctccagc
      781 cacggaaaag ctgcacaaaa aagcctggat ctctctcgct caaccacccc cgctgccagt
      841 gaaggctctc tccgcctcgc cctctagcgt tcatctggag aagtaccgcc ccgggctcct
      901 ggggacagcg cgcatcatgg ggtccaccaa catccctctg gtcaaggccc tccgcagctc
      961 tgtctccgac tatgtcaact acgacatcat cgtccggcat tataactaca cgggaaagct
     1021 gaatatcggc gcggacaagg aaaacggcat taaactgatc tcagtggtgt tcattctcat
     1081 ctgctgcttt atcatcctag agaacatctt tgttttgctg accatttgga aaaccaagaa
     1141 gttccaccga cccatgtact attttattgg caacctcgcc ctctcagacc tgttggcagg
     1201 agtggcttac acagccaacc tgcttttgtc tggggccacc acctacaagc taacccccgc
     1261 ccagtggttt ctgcgggaag ggagtatgtt tgtggccctg tctgcctccg tgttcagcct
     1321 cctagccatt gccattgagc gctatatcac catgctgaag atgaaactcc acaatgggag
     1381 caacaggttc cgctccttcc tgctcatcag tgcctgctgg gttatctccc tcatcctggg
     1441 gggcctgccc atcatgggct ggaactgcat cagcacgctg cccagctgct ccacagtgct
     1501 gccgctctac cacaagcact atatcctctt ctgcaccacg gtcttcactc tgctccttct
     1561 ctccatcgtc atcctgtact gcaggatcta ctccttggtc aggactcgga gccgccgtct
     1621 gactttccgc aagaacattt cgaaggccag ccgcagctct gagaagtcgc tggcactgct
     1681 gaagaccgtg attatcgtcc tgggcgtctt catcgcctgc tgggcgccac tcttcatcct
     1741 gcttctgctg gacgtgggct gcaaggtgaa gacctgcgac atcctcttca gaacggagta
     1801 cttcctggtg ttggctgtgc tcaactctgg caccaacccc atcatttaca ctttgtccaa
     1861 caaggagatg cgtcgggcct tcgtccggat catgtcctgc tgcaagtgcc ccagcggaga
     1921 ctccgccggc aaattcacac gacccatcat cgccggcatg gaattcagcc gcagtaagtc
     1981 agacaactcc tcccaccctc agaaggatga tggggataac ccagagacca ttatgtcttc
     2041 tggaaacgtc aactcttctt cctaaaagtg aaaactgctg acccatgggg agcttgcatg
     2101 gttgcccacc accccagtgt ttggaaaaaa acccaacaac tctgtgcctc tgctgctgcc
     2161 aggcaggagc tgtctcaagc cagagggagg gagggggagc ttaagaacag cctggtggtg
     2221 cctggtgttg gtgggtagac ttagttcctg tgaacaatgc actgggaagg gtggagatca
     2281 ggtcctcgcc tggaatctat ttcctcccct cgctggagct ttgattttgc actgagccaa
     2341 aggtctagca ttgtcaagct cctgaagggt tcatctggcc cctcctcaaa gactaatgtc
     2401 cccgtgtgaa agcgtctctg ttgggagctt tgaggagatg ttttctttca ctttagtttc
     2461 cagcccaagt gagtgtgtgc acttctgctt cgctaggtat gctctgcata tcctaccctc
     2521 ccttcccctt cacacccctc ctcagaattc ctttacttta tattttaact acctggcatt
     2581 cagagttggg agtgtggcac ggtccatttc ttgatgatgt gtagcaggta ggctgtgtcc
     2641 agcaggtaga ctgtggtgga gatggtttgg aaatgtaaag caatttcact tgcggaagcc
     2701 aaagtttcca cgtaagctgg atgagtggtt ttgattttag ttgcagtcac tttaaaaaaa
     2761 aaaaaaaaac ctttgcaatg aaatgtatta cagtatatcc accatggctg aaaactgcat
     2821 taggaagtcc aatttattta aatgacatca gccaggatcc ttagtgtcat aggagaaaca
     2881 aacaagcaaa acaaggtgaa aactgactgg ggggtgactt tgtaaaccaa gaaagatttc
     2941 ttaacgaatt tgtctaacaa atacagcatc tgtctttggc actttcgttg atgtttcttt
     3001 cagagtgttg tgtgaatcat ttcaaccaac aggatggctg tattttgttg tgttaaaagt
     3061 acttttttaa taatttttga atgtatttgt ttcaacattt tattggattt tcctaacctg
     3121 tgttaacacc attgaatgtg tatttcttca gaaaatacca tcctcttgtg cccttaaagc
     3181 attactttaa ctgataggga acataagaag tttttcagta cattaaatag ttaattgaag
     3241 atgtgtataa atgtcgcaaa gaataaaaat atattggtgt ctgtttagtg tggtttccag
     3301 tgcaattaaa ccgagaaatg tcttttttta aaaaaaaaaa atagtattta ataggtttct
     3361 gacaatgtgg atcattttgc acatagcttt atcaactttt aaacattaat aaactgattt
     3421 ttttttaaag a
//
LOCUS       XM_032651066            2832 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sphingosine-1-phosphate receptor 1
            (S1PR1), transcript variant X3, mRNA.
ACCESSION   XM_032651066
VERSION     XM_032651066.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2832
                     /gene="S1PR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 15 long SRA reads, 22
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763398"
     CDS             318..1466
                     /gene="S1PR1"
                     /codon_start=1
                     /product="sphingosine 1-phosphate receptor 1 isoform X2"
                     /protein_id="XP_032506957.1"
                     /db_xref="GeneID:116763398"
                     /translation="MGSTNIPLVKALRSSVSDYVNYDIIVRHYNYTGKLNIGADKENG
                     IKLISVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL
                     LLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNRFRS
                     FLLISACWVISLILGGLPIMGWNCISTLPSCSTVLPLYHKHYILFCTTVFTLLLLSIV
                     ILYCRIYSLVRTRSRRLTFRKNISKASRSSEKSLALLKTVIIVLGVFIACWAPLFILL
                     LLDVGCKVKTCDILFRTEYFLVLAVLNSGTNPIIYTLSNKEMRRAFVRIMSCCKCPSG
                     DSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDGDNPETIMSSGNVNSSS"
     misc_feature    453..1283
                     /gene="S1PR1"
                     /note="sphingosine-1-phosphate receptor subtype 1 (S1PR1
                     or S1P1), also called endothelial differentiation gene 1
                     (Edg1), member of the class A family of
                     seven-transmembrane G protein-coupled receptors; Region:
                     7tmA_S1PR1_Edg1; cd15346"
                     /db_xref="CDD:320468"
     misc_feature    456..536
                     /gene="S1PR1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320468"
     misc_feature    555..632
                     /gene="S1PR1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320468"
     misc_feature    order(618..620,630..632,675..680,687..692,699..701,
                     897..899,933..935,1122..1124,1143..1145,1197..1199,
                     1206..1208)
                     /gene="S1PR1"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:320468"
     misc_feature    666..758
                     /gene="S1PR1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320468"
     misc_feature    789..851
                     /gene="S1PR1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320468"
     misc_feature    909..998
                     /gene="S1PR1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320468"
     misc_feature    1062..1154
                     /gene="S1PR1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320468"
     misc_feature    1185..1262
                     /gene="S1PR1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320468"
ORIGIN      
        1 gctgggtggt ggtggagggc agaggtgtgc gtctccgccc tcacattggc ggttgaggct
       61 cttcgaagga gagaccagaa gctggtggtg agcccgccgc cgagcgggtg aacgcttcag
      121 agactctttc gactgcggct ggaaaccttg tggggctgcg gtttctgagg ctctctccag
      181 ccacggaaaa gctgcacaaa aaagcctgga tctctctcgc tcaaccaccc ccgctgccag
      241 tgaaggctct ctccgcctcg ccctctagcg ttcatctgga gaagtaccgc cccgggctcc
      301 tggggacagc gcgcatcatg gggtccacca acatccctct ggtcaaggcc ctccgcagct
      361 ctgtctccga ctatgtcaac tacgacatca tcgtccggca ttataactac acgggaaagc
      421 tgaatatcgg cgcggacaag gaaaacggca ttaaactgat ctcagtggtg ttcattctca
      481 tctgctgctt tatcatccta gagaacatct ttgttttgct gaccatttgg aaaaccaaga
      541 agttccaccg acccatgtac tattttattg gcaacctcgc cctctcagac ctgttggcag
      601 gagtggctta cacagccaac ctgcttttgt ctggggccac cacctacaag ctaacccccg
      661 cccagtggtt tctgcgggaa gggagtatgt ttgtggccct gtctgcctcc gtgttcagcc
      721 tcctagccat tgccattgag cgctatatca ccatgctgaa gatgaaactc cacaatggga
      781 gcaacaggtt ccgctccttc ctgctcatca gtgcctgctg ggttatctcc ctcatcctgg
      841 ggggcctgcc catcatgggc tggaactgca tcagcacgct gcccagctgc tccacagtgc
      901 tgccgctcta ccacaagcac tatatcctct tctgcaccac ggtcttcact ctgctccttc
      961 tctccatcgt catcctgtac tgcaggatct actccttggt caggactcgg agccgccgtc
     1021 tgactttccg caagaacatt tcgaaggcca gccgcagctc tgagaagtcg ctggcactgc
     1081 tgaagaccgt gattatcgtc ctgggcgtct tcatcgcctg ctgggcgcca ctcttcatcc
     1141 tgcttctgct ggacgtgggc tgcaaggtga agacctgcga catcctcttc agaacggagt
     1201 acttcctggt gttggctgtg ctcaactctg gcaccaaccc catcatttac actttgtcca
     1261 acaaggagat gcgtcgggcc ttcgtccgga tcatgtcctg ctgcaagtgc cccagcggag
     1321 actccgccgg caaattcaca cgacccatca tcgccggcat ggaattcagc cgcagtaagt
     1381 cagacaactc ctcccaccct cagaaggatg atggggataa cccagagacc attatgtctt
     1441 ctggaaacgt caactcttct tcctaaaagt gaaaactgct gacccatggg gagcttgcat
     1501 ggttgcccac caccccagtg tttggaaaaa aacccaacaa ctctgtgcct ctgctgctgc
     1561 caggcaggag ctgtctcaag ccagagggag ggagggggag cttaagaaca gcctggtggt
     1621 gcctggtgtt ggtgggtaga cttagttcct gtgaacaatg cactgggaag ggtggagatc
     1681 aggtcctcgc ctggaatcta tttcctcccc tcgctggagc tttgattttg cactgagcca
     1741 aaggtctagc attgtcaagc tcctgaaggg ttcatctggc ccctcctcaa agactaatgt
     1801 ccccgtgtga aagcgtctct gttgggagct ttgaggagat gttttctttc actttagttt
     1861 ccagcccaag tgagtgtgtg cacttctgct tcgctaggta tgctctgcat atcctaccct
     1921 cccttcccct tcacacccct cctcagaatt cctttacttt atattttaac tacctggcat
     1981 tcagagttgg gagtgtggca cggtccattt cttgatgatg tgtagcaggt aggctgtgtc
     2041 cagcaggtag actgtggtgg agatggtttg gaaatgtaaa gcaatttcac ttgcggaagc
     2101 caaagtttcc acgtaagctg gatgagtggt tttgatttta gttgcagtca ctttaaaaaa
     2161 aaaaaaaaaa cctttgcaat gaaatgtatt acagtatatc caccatggct gaaaactgca
     2221 ttaggaagtc caatttattt aaatgacatc agccaggatc cttagtgtca taggagaaac
     2281 aaacaagcaa aacaaggtga aaactgactg gggggtgact ttgtaaacca agaaagattt
     2341 cttaacgaat ttgtctaaca aatacagcat ctgtctttgg cactttcgtt gatgtttctt
     2401 tcagagtgtt gtgtgaatca tttcaaccaa caggatggct gtattttgtt gtgttaaaag
     2461 tactttttta ataatttttg aatgtatttg tttcaacatt ttattggatt ttcctaacct
     2521 gtgttaacac cattgaatgt gtatttcttc agaaaatacc atcctcttgt gcccttaaag
     2581 cattacttta actgataggg aacataagaa gtttttcagt acattaaata gttaattgaa
     2641 gatgtgtata aatgtcgcaa agaataaaaa tatattggtg tctgtttagt gtggtttcca
     2701 gtgcaattaa accgagaaat gtcttttttt aaaaaaaaaa aatagtattt aataggtttc
     2761 tgacaatgtg gatcattttg cacatagctt tatcaacttt taaacattaa taaactgatt
     2821 tttttttaaa ga
//
LOCUS       XM_032651072            2782 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sphingosine-1-phosphate receptor 1
            (S1PR1), transcript variant X4, mRNA.
ACCESSION   XM_032651072
VERSION     XM_032651072.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2782
                     /gene="S1PR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 15 long SRA reads, 22
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763398"
     CDS             268..1416
                     /gene="S1PR1"
                     /codon_start=1
                     /product="sphingosine 1-phosphate receptor 1 isoform X2"
                     /protein_id="XP_032506963.1"
                     /db_xref="GeneID:116763398"
                     /translation="MGSTNIPLVKALRSSVSDYVNYDIIVRHYNYTGKLNIGADKENG
                     IKLISVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL
                     LLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNRFRS
                     FLLISACWVISLILGGLPIMGWNCISTLPSCSTVLPLYHKHYILFCTTVFTLLLLSIV
                     ILYCRIYSLVRTRSRRLTFRKNISKASRSSEKSLALLKTVIIVLGVFIACWAPLFILL
                     LLDVGCKVKTCDILFRTEYFLVLAVLNSGTNPIIYTLSNKEMRRAFVRIMSCCKCPSG
                     DSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDGDNPETIMSSGNVNSSS"
     misc_feature    403..1233
                     /gene="S1PR1"
                     /note="sphingosine-1-phosphate receptor subtype 1 (S1PR1
                     or S1P1), also called endothelial differentiation gene 1
                     (Edg1), member of the class A family of
                     seven-transmembrane G protein-coupled receptors; Region:
                     7tmA_S1PR1_Edg1; cd15346"
                     /db_xref="CDD:320468"
     misc_feature    406..486
                     /gene="S1PR1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320468"
     misc_feature    505..582
                     /gene="S1PR1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320468"
     misc_feature    order(568..570,580..582,625..630,637..642,649..651,
                     847..849,883..885,1072..1074,1093..1095,1147..1149,
                     1156..1158)
                     /gene="S1PR1"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:320468"
     misc_feature    616..708
                     /gene="S1PR1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320468"
     misc_feature    739..801
                     /gene="S1PR1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320468"
     misc_feature    859..948
                     /gene="S1PR1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320468"
     misc_feature    1012..1104
                     /gene="S1PR1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320468"
     misc_feature    1135..1212
                     /gene="S1PR1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320468"
ORIGIN      
        1 ggggataaat ggggttcact tttccaattt tcccattttc catttaagtg gatgtaacca
       61 tagggggcga ttttcgtctt gtcgcgtcgg aattttcagt ttgggctgcg gtttctgagg
      121 ctctctccag ccacggaaaa gctgcacaaa aaagcctgga tctctctcgc tcaaccaccc
      181 ccgctgccag tgaaggctct ctccgcctcg ccctctagcg ttcatctgga gaagtaccgc
      241 cccgggctcc tggggacagc gcgcatcatg gggtccacca acatccctct ggtcaaggcc
      301 ctccgcagct ctgtctccga ctatgtcaac tacgacatca tcgtccggca ttataactac
      361 acgggaaagc tgaatatcgg cgcggacaag gaaaacggca ttaaactgat ctcagtggtg
      421 ttcattctca tctgctgctt tatcatccta gagaacatct ttgttttgct gaccatttgg
      481 aaaaccaaga agttccaccg acccatgtac tattttattg gcaacctcgc cctctcagac
      541 ctgttggcag gagtggctta cacagccaac ctgcttttgt ctggggccac cacctacaag
      601 ctaacccccg cccagtggtt tctgcgggaa gggagtatgt ttgtggccct gtctgcctcc
      661 gtgttcagcc tcctagccat tgccattgag cgctatatca ccatgctgaa gatgaaactc
      721 cacaatggga gcaacaggtt ccgctccttc ctgctcatca gtgcctgctg ggttatctcc
      781 ctcatcctgg ggggcctgcc catcatgggc tggaactgca tcagcacgct gcccagctgc
      841 tccacagtgc tgccgctcta ccacaagcac tatatcctct tctgcaccac ggtcttcact
      901 ctgctccttc tctccatcgt catcctgtac tgcaggatct actccttggt caggactcgg
      961 agccgccgtc tgactttccg caagaacatt tcgaaggcca gccgcagctc tgagaagtcg
     1021 ctggcactgc tgaagaccgt gattatcgtc ctgggcgtct tcatcgcctg ctgggcgcca
     1081 ctcttcatcc tgcttctgct ggacgtgggc tgcaaggtga agacctgcga catcctcttc
     1141 agaacggagt acttcctggt gttggctgtg ctcaactctg gcaccaaccc catcatttac
     1201 actttgtcca acaaggagat gcgtcgggcc ttcgtccgga tcatgtcctg ctgcaagtgc
     1261 cccagcggag actccgccgg caaattcaca cgacccatca tcgccggcat ggaattcagc
     1321 cgcagtaagt cagacaactc ctcccaccct cagaaggatg atggggataa cccagagacc
     1381 attatgtctt ctggaaacgt caactcttct tcctaaaagt gaaaactgct gacccatggg
     1441 gagcttgcat ggttgcccac caccccagtg tttggaaaaa aacccaacaa ctctgtgcct
     1501 ctgctgctgc caggcaggag ctgtctcaag ccagagggag ggagggggag cttaagaaca
     1561 gcctggtggt gcctggtgtt ggtgggtaga cttagttcct gtgaacaatg cactgggaag
     1621 ggtggagatc aggtcctcgc ctggaatcta tttcctcccc tcgctggagc tttgattttg
     1681 cactgagcca aaggtctagc attgtcaagc tcctgaaggg ttcatctggc ccctcctcaa
     1741 agactaatgt ccccgtgtga aagcgtctct gttgggagct ttgaggagat gttttctttc
     1801 actttagttt ccagcccaag tgagtgtgtg cacttctgct tcgctaggta tgctctgcat
     1861 atcctaccct cccttcccct tcacacccct cctcagaatt cctttacttt atattttaac
     1921 tacctggcat tcagagttgg gagtgtggca cggtccattt cttgatgatg tgtagcaggt
     1981 aggctgtgtc cagcaggtag actgtggtgg agatggtttg gaaatgtaaa gcaatttcac
     2041 ttgcggaagc caaagtttcc acgtaagctg gatgagtggt tttgatttta gttgcagtca
     2101 ctttaaaaaa aaaaaaaaaa cctttgcaat gaaatgtatt acagtatatc caccatggct
     2161 gaaaactgca ttaggaagtc caatttattt aaatgacatc agccaggatc cttagtgtca
     2221 taggagaaac aaacaagcaa aacaaggtga aaactgactg gggggtgact ttgtaaacca
     2281 agaaagattt cttaacgaat ttgtctaaca aatacagcat ctgtctttgg cactttcgtt
     2341 gatgtttctt tcagagtgtt gtgtgaatca tttcaaccaa caggatggct gtattttgtt
     2401 gtgttaaaag tactttttta ataatttttg aatgtatttg tttcaacatt ttattggatt
     2461 ttcctaacct gtgttaacac cattgaatgt gtatttcttc agaaaatacc atcctcttgt
     2521 gcccttaaag cattacttta actgataggg aacataagaa gtttttcagt acattaaata
     2581 gttaattgaa gatgtgtata aatgtcgcaa agaataaaaa tatattggtg tctgtttagt
     2641 gtggtttcca gtgcaattaa accgagaaat gtcttttttt aaaaaaaaaa aatagtattt
     2701 aataggtttc tgacaatgtg gatcattttg cacatagctt tatcaacttt taaacattaa
     2761 taaactgatt tttttttaaa ga
//
LOCUS       XR_004352518             326 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763409
            (LOC116763409), ncRNA.
ACCESSION   XR_004352518
VERSION     XR_004352518.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..326
                     /gene="LOC116763409"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116763409"
     ncRNA           1..326
                     /ncRNA_class="lncRNA"
                     /gene="LOC116763409"
                     /product="uncharacterized LOC116763409"
                     /db_xref="GeneID:116763409"
ORIGIN      
        1 agttacctat gaatatactt ggttttacat gaaaagaaac tgaagtgcga acatcacaca
       61 agttaaaacc agttaatggg agaaatcaag attgcactga agaaagaaat gaagacagat
      121 ggggaacaac tcatagttga aatcctccaa tgcagaaata tcacctacaa atttaaatct
      181 cctgatcact taccagattt atatgtgaag atatatgtga tgaacatttc tacccaagaa
      241 aaagttgatc aagaaaaaaa caagagtatg tagacatgat cgagagcctt agttcaatga
      301 aacttttaga ttcagcctaa ctcctg
//
LOCUS       XM_032651092            1803 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein FAM71A-like (LOC116763413), mRNA.
ACCESSION   XM_032651092
VERSION     XM_032651092.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1803
                     /gene="LOC116763413"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 33% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763413"
     CDS             1..1803
                     /gene="LOC116763413"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1429..1431,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: protein FAM71A-like"
                     /protein_id="XP_032506983.1"
                     /db_xref="GeneID:116763413"
                     /translation="MSGDSLLPYHTAQSSTGVGLFNTTTGKLQQQLHKGEYDMFKDAP
                     VFESDFIQITKRGDLLDVHNCVCMVTVGITSSSPVLPLPDTMLLARWATGCDEHAEHS
                     QAAKGKSHEAAKTLELTRLLPLTLVSISTHNREKQQLRVKFATGRSWYLQLCAPLDAQ
                     EDLFTSWEELIYLLRPPVEGLSCTCAVPAWDMICMPVFEEQDDGRSPAVEDFQAMWDQ
                     DQVSICSLHTCSEVAGATSAAFAGGEEIQLDSHKPDTMPDVATAKAKPTVLDKASASR
                     ATTKVETAGVAGGTAAGALSVAVIKSPAPEEQSTATAATASNGPGGSKTSIATGGTAR
                     TSLRSRKTVLRTIQGMLAGAANYSGYASSTSTSLSPEAGMTVVGAEPTSKTVEGRADE
                     EDEGTLISTLPQEGKVSEQDGSSQRVSQARKGRRERREHWGEDRALTSLSLCSSVESH
                     HKAAGNKTIQKAAGPCSGGRRATRDDXKDKGHGSPGGSEQGTAHKGIGRAPITNESRT
                     SHKSGRSLSTESSGPSTERLSRISSFFRNVRASLTAKTVASSRDKYVSILAKPVEGTR
                     MEAIVETAESGQGLEITGGVTSDTMEPVTAEAHQ"
     misc_feature    343..537
                     /gene="LOC116763413"
                     /note="Protein of unknown function (DUF3699); Region:
                     DUF3699; pfam12480"
                     /db_xref="CDD:463601"
ORIGIN      
        1 atgagtgggg actctctgct cccgtatcac acggcccaga gcagcaccgg ggtgggcctg
       61 ttcaacacca ccacggggaa gctgcagcaa caactgcaca agggcgaata cgacatgttc
      121 aaggacgccc cggtattcga gagcgacttc atccagatca caaagagggg agacctgctt
      181 gacgtgcaca actgtgtctg catggtgacc gtgggcatca catccagcag ccccgtcctc
      241 ccactcccag acaccatgct gctggcccga tgggccaccg gctgtgacga gcacgctgag
      301 cacagccagg ccgccaaggg caagagccac gaggctgcaa agaccttaga gctcaccagg
      361 ctccttcccc tgacgctcgt gagcatctcc actcacaatc gtgagaaaca acagctgcgc
      421 gtgaagtttg ccactggccg ctcctggtac ctgcagctgt gcgcccctct ggacgcgcag
      481 gaagacctct tcacctcttg ggaagagctg atttacctcc tgcgaccacc agtggagggt
      541 ctcagctgca cctgcgccgt tccagcctgg gacatgatct gcatgcctgt gttcgaggag
      601 caggacgacg gcaggagccc ggcagtggag gatttccaag caatgtggga tcaggaccag
      661 gtgagcatct gcagcctcca cacgtgctct gaggtggccg gggccacgtc cgcagctttt
      721 gccggtgggg aggagatcca actggactcc cacaagcccg ataccatgcc cgatgtggcc
      781 actgcaaaag caaaacctac agtgcttgac aaagcgtcag catcgcgggc aacgacaaag
      841 gtggagacag caggggtggc aggaggcacc gcagcgggtg ctttgagcgt ggcagtgatc
      901 aagtctcctg cccctgaaga gcagagcacg gccacagcag ccacagccag caacggtccg
      961 ggaggaagca aaaccagcat agccactggg ggcaccgcca gaacatccct gaggagcagg
     1021 aaaacggtgc tgcgaacaat tcagggtatg ctggcaggtg ccgcgaacta ttcagggtat
     1081 gcttccagca catccaccag cctctcccca gaggccggca tgactgtggt cggagcagaa
     1141 cccaccagca agactgttga aggaagagcc gacgaggagg acgaggggac cctcatctca
     1201 accttgccac aggaaggcaa agtgagtgaa caggatggca gctcacagag ggtgtcccag
     1261 gcccgcaagg gaagaaggga gagaagagag cactggggag aggacagagc tcttacgagc
     1321 ctctcgctct gcagttcagt ggaaagccac cacaaggcag cggggaacaa gaccatccag
     1381 aaagcagctg gcccgtgctc aggcggccgc agagccacta gagatgacta aaaggacaaa
     1441 ggccacggca gcccgggggg cagcgagcag ggcactgctc acaaaggcat cggccgtgct
     1501 cccatcacca acgagtccag gacctcgcac aaatcgggca ggagcttatc tacagagagt
     1561 tcaggtccct ccaccgagag actcagcagg atcagctctt tcttcaggaa cgtcagagcc
     1621 agtctcactg caaagacagt ggcctcctca cgcgataaat atgtgagcat cctggcgaag
     1681 ccagtggaag ggacccgaat ggaggccatc gtagagacag cagagagtgg gcaggggctg
     1741 gagatcactg gaggtgtgac atctgacacc atggagccag tgaccgctga agcccatcaa
     1801 tag
//
LOCUS       XM_032651101            2588 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus activating transcription factor 3 (ATF3),
            transcript variant X1, mRNA.
ACCESSION   XM_032651101
VERSION     XM_032651101.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2588
                     /gene="ATF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 16 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763418"
     CDS             652..1317
                     /gene="ATF3"
                     /codon_start=1
                     /product="cyclic AMP-dependent transcription factor ATF-3
                     isoform X1"
                     /protein_id="XP_032506992.1"
                     /db_xref="GeneID:116763418"
                     /translation="MGKERASRGRARGRWGSPCPPRSAGRQDSAGSPERKLVGKMMLQ
                     HPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQSKHLCHRMSSAL
                     ESVTVSSRPLEMSVTKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
                     LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGT
                     LQS"
     misc_feature    1057..1218
                     /gene="ATF3"
                     /note="Basic leucine zipper (bZIP) domain of Activating
                     Transcription Factor-3 (ATF-3) and similar proteins: a
                     DNA-binding and dimerization domain; Region: bZIP_ATF3;
                     cd14722"
                     /db_xref="CDD:269870"
     misc_feature    1057..1209
                     /gene="ATF3"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269870"
     misc_feature    order(1090..1092,1099..1104,1111..1116,1120..1125,
                     1132..1137,1141..1146,1153..1158,1162..1167,1174..1179,
                     1183..1188,1195..1200,1204..1209)
                     /gene="ATF3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269870"
ORIGIN      
        1 cacaggcgca cgcagcgagg cgcacactgc acagcgctct ccccgcgccg ccgctccagc
       61 ggacccgcca gcccgcgcgc cggctgtgcg ccctctgtgc tcgcccgccg gccccacaaa
      121 cagcccgacc ccaccccgac cccgcccgcc ctccggaccc tgggcgcccc gagtggagcc
      181 aggaggtgag cgttggaagc cgagtgagcg cggcaagggt ggctcgcttt cattctcttt
      241 gcgcccctct ggtaaccagt cggcggcccc tgcgcccacc cccgacactt gccccccgcc
      301 tctggcttcg aacttctccc agccaccact gcttctcggc gctttagaaa ctttatcgca
      361 aagaactttc tcttttgccc tggggcgcga aatgctcctg gcaaccgaga gatcgggctc
      421 ccgctcctcc actggcgtcg gaccacagct cctctccgcc cttgcgttta cctaacccct
      481 gggagcggtc gacgggtggt gggtgctcag ggtgtccgag cctatcgggc tcgccgaccg
      541 gctccatccc ttgctcagtg cgcgggcact gccactcgcg agcccagcct tcccgagagg
      601 cgcggaggcc ggtgctcgcg gaagggctgc cccaggggcg gaacggaatg aatggggaag
      661 gagcgggcga gccggggtcg cgcgcgcggc cgctgggggt cgccctgccc gccccggagc
      721 gccgggaggc aggacagcgc cggtagcccg gagcgaaagt tagttggcaa aatgatgctt
      781 caacacccag gccaggtctc tgcctcggaa gtcagtgcct ctgccatcgt cccctgcctg
      841 tcccctcctg ggtcactggt gtttgaggat tttgctaacc tgacaccctt tgtcaaggaa
      901 gagctgaggt tcgccatcca gagcaagcac ctctgccacc ggatgtcctc ggcgctggag
      961 tcagtcaccg tcagcagcag acccctcgag atgtcagtca ccaaagccga ggtagcccct
     1021 gaagaagatg aaaggaaaaa gaggcgacgg gaaagaaata agattgcagc tgccaagtgc
     1081 cgaaacaaga agaaggagaa gacagagtgc ctgcagaagg agtcagagaa gctggagagt
     1141 gtgaatgccg aactgaaggc ccaaattgag gagctcaaga atgagaagca gcatttgata
     1201 tacatgctca acctgcaccg gcccacatgc attgtccggg ctcagaacgg gaggactcca
     1261 gaagatgaga gaaacctttt tatccaacag ataaaagagg gaacattgca gagctaagca
     1321 gccgtggtat ggggcaactg cggagtcctc atcgaatcct ccttttacat ccgaaaccct
     1381 gaagccattg gagatctgac ttcctgtgca cctcttgaat cccagcagca aagaaccatc
     1441 aaggtgggag ggccctcggt gactttccac tctaccccag agtggacttt ggaccagggc
     1501 aacaagggca tctttttcct taactccaga atttaggtct taacatattg gccttccttg
     1561 gattctccag atggcccctg gttagggtcc tgcctgcctt tcatctggat tctgcaaaaa
     1621 ccaggcctcc caccattagg attcatgcag aagcatcatc tgtaccttgg gtgggtgggg
     1681 tggggccacc tcctctgctg ccgctgccac tgtcacttgt aggggacgtg gggtgagaat
     1741 ggcattttgt gaagctgtgc gatggctagg gttgtgcttt ctagcaaata tgctgttctg
     1801 tacaggaatt accgtgtgca aggcgttcgt ttcaaaacta ggcgttgtgc tcttctgacg
     1861 tttgcgccac acaccaccac tgtgactttc tcatgacttt cctcagatct ggtttctgag
     1921 aatttgcggc ggggtgggtg gtgtgtctat catatcagca cgtgcagtgt cttgcaaagt
     1981 attcaggtgg ccagaagagg ttgtcagccc cgggagaaca gaattgtgcc agcctggact
     2041 gagtgcagtt ttgtgccaac agaaaaggcc tcttcccctt ggcacccaag cattaacgca
     2101 cgtcctctgt tgcaaactca gttataatgt cacaggaaga aagcagaaac agaatccagc
     2161 ttctgaaggg ttaggattct ctgctcagtg acttaggtca ggaatttttt ctaggccgga
     2221 agagccaaag aatattccat tttccttttc ttgtggttga aaaccacaat cagtggagat
     2281 gcatttgaag ccaggtgatg cctaggcttt agcattatta gatgttaatg gcattgtttc
     2341 tgtcatgcag atgtttgtag aaatcgggcc cagagcattt atagctgtga gacagtcact
     2401 cacactggcc acgaggactc tggctactgt ctgtttaaat tctgacgttt ctgtgaaatc
     2461 ctcagagtgt ttaatcctac tcagtagtat cattacaatt ttctgtaaaa gaagatatta
     2521 cttatttatc ctagtattcc taacctgtca atagaataaa tattggaacc aagacatggt
     2581 gaacttaa
//
LOCUS       XM_032651112            1999 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus activating transcription factor 3 (ATF3),
            transcript variant X2, mRNA.
ACCESSION   XM_032651112
VERSION     XM_032651112.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1999
                     /gene="ATF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 9 long SRA reads, 16
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763418"
     CDS             183..728
                     /gene="ATF3"
                     /codon_start=1
                     /product="cyclic AMP-dependent transcription factor ATF-3
                     isoform X2"
                     /protein_id="XP_032507003.1"
                     /db_xref="GeneID:116763418"
                     /translation="MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEE
                     LRFAIQSKHLCHRMSSALESVTVSSRPLEMSVTKAEVAPEEDERKKRRRERNKIAAAK
                     CRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNG
                     RTPEDERNLFIQQIKEGTLQS"
     misc_feature    468..629
                     /gene="ATF3"
                     /note="Basic leucine zipper (bZIP) domain of Activating
                     Transcription Factor-3 (ATF-3) and similar proteins: a
                     DNA-binding and dimerization domain; Region: bZIP_ATF3;
                     cd14722"
                     /db_xref="CDD:269870"
     misc_feature    468..620
                     /gene="ATF3"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269870"
     misc_feature    order(501..503,510..515,522..527,531..536,543..548,
                     552..557,564..569,573..578,585..590,594..599,606..611,
                     615..620)
                     /gene="ATF3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269870"
ORIGIN      
        1 gcacgcagcg aggcgcacac tgcacagcgc tctccccgcg ccgccgctcc agcggacccg
       61 ccagcccgcg cgccggctgt gcgccctctg tgctcgcccg ccggccccac aaacagcccg
      121 accccacccc gaccccgccc gccctccgga ccctgggcgc cccgagtgga gccaggagca
      181 aaatgatgct tcaacaccca ggccaggtct ctgcctcgga agtcagtgcc tctgccatcg
      241 tcccctgcct gtcccctcct gggtcactgg tgtttgagga ttttgctaac ctgacaccct
      301 ttgtcaagga agagctgagg ttcgccatcc agagcaagca cctctgccac cggatgtcct
      361 cggcgctgga gtcagtcacc gtcagcagca gacccctcga gatgtcagtc accaaagccg
      421 aggtagcccc tgaagaagat gaaaggaaaa agaggcgacg ggaaagaaat aagattgcag
      481 ctgccaagtg ccgaaacaag aagaaggaga agacagagtg cctgcagaag gagtcagaga
      541 agctggagag tgtgaatgcc gaactgaagg cccaaattga ggagctcaag aatgagaagc
      601 agcatttgat atacatgctc aacctgcacc ggcccacatg cattgtccgg gctcagaacg
      661 ggaggactcc agaagatgag agaaaccttt ttatccaaca gataaaagag ggaacattgc
      721 agagctaagc agccgtggta tggggcaact gcggagtcct catcgaatcc tccttttaca
      781 tccgaaaccc tgaagccatt ggagatctga cttcctgtgc acctcttgaa tcccagcagc
      841 aaagaaccat caaggtggga gggccctcgg tgactttcca ctctacccca gagtggactt
      901 tggaccaggg caacaagggc atctttttcc ttaactccag aatttaggtc ttaacatatt
      961 ggccttcctt ggattctcca gatggcccct ggttagggtc ctgcctgcct ttcatctgga
     1021 ttctgcaaaa accaggcctc ccaccattag gattcatgca gaagcatcat ctgtaccttg
     1081 ggtgggtggg gtggggccac ctcctctgct gccgctgcca ctgtcacttg taggggacgt
     1141 ggggtgagaa tggcattttg tgaagctgtg cgatggctag ggttgtgctt tctagcaaat
     1201 atgctgttct gtacaggaat taccgtgtgc aaggcgttcg tttcaaaact aggcgttgtg
     1261 ctcttctgac gtttgcgcca cacaccacca ctgtgacttt ctcatgactt tcctcagatc
     1321 tggtttctga gaatttgcgg cggggtgggt ggtgtgtcta tcatatcagc acgtgcagtg
     1381 tcttgcaaag tattcaggtg gccagaagag gttgtcagcc ccgggagaac agaattgtgc
     1441 cagcctggac tgagtgcagt tttgtgccaa cagaaaaggc ctcttcccct tggcacccaa
     1501 gcattaacgc acgtcctctg ttgcaaactc agttataatg tcacaggaag aaagcagaaa
     1561 cagaatccag cttctgaagg gttaggattc tctgctcagt gacttaggtc aggaattttt
     1621 tctaggccgg aagagccaaa gaatattcca ttttcctttt cttgtggttg aaaaccacaa
     1681 tcagtggaga tgcatttgaa gccaggtgat gcctaggctt tagcattatt agatgttaat
     1741 ggcattgttt ctgtcatgca gatgtttgta gaaatcgggc ccagagcatt tatagctgtg
     1801 agacagtcac tcacactggc cacgaggact ctggctactg tctgtttaaa ttctgacgtt
     1861 tctgtgaaat cctcagagtg tttaatccta ctcagtagta tcattacaat tttctgtaaa
     1921 agaagatatt acttatttat cctagtattc ctaacctgtc aatagaataa atattggaac
     1981 caagacatgg tgaacttaa
//
LOCUS       XM_032651122            1893 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus activating transcription factor 3 (ATF3),
            transcript variant X3, mRNA.
ACCESSION   XM_032651122
VERSION     XM_032651122.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1893
                     /gene="ATF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 16 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763418"
     CDS             77..622
                     /gene="ATF3"
                     /codon_start=1
                     /product="cyclic AMP-dependent transcription factor ATF-3
                     isoform X2"
                     /protein_id="XP_032507013.1"
                     /db_xref="GeneID:116763418"
                     /translation="MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEE
                     LRFAIQSKHLCHRMSSALESVTVSSRPLEMSVTKAEVAPEEDERKKRRRERNKIAAAK
                     CRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNG
                     RTPEDERNLFIQQIKEGTLQS"
     misc_feature    362..523
                     /gene="ATF3"
                     /note="Basic leucine zipper (bZIP) domain of Activating
                     Transcription Factor-3 (ATF-3) and similar proteins: a
                     DNA-binding and dimerization domain; Region: bZIP_ATF3;
                     cd14722"
                     /db_xref="CDD:269870"
     misc_feature    362..514
                     /gene="ATF3"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269870"
     misc_feature    order(395..397,404..409,416..421,425..430,437..442,
                     446..451,458..463,467..472,479..484,488..493,500..505,
                     509..514)
                     /gene="ATF3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269870"
ORIGIN      
        1 caagaggaga aatcctcccc taaatagggt gttccacagc ttcctaagga ttttcggcac
       61 ccatctcaaa atcaaaatga tgcttcaaca cccaggccag gtctctgcct cggaagtcag
      121 tgcctctgcc atcgtcccct gcctgtcccc tcctgggtca ctggtgtttg aggattttgc
      181 taacctgaca ccctttgtca aggaagagct gaggttcgcc atccagagca agcacctctg
      241 ccaccggatg tcctcggcgc tggagtcagt caccgtcagc agcagacccc tcgagatgtc
      301 agtcaccaaa gccgaggtag cccctgaaga agatgaaagg aaaaagaggc gacgggaaag
      361 aaataagatt gcagctgcca agtgccgaaa caagaagaag gagaagacag agtgcctgca
      421 gaaggagtca gagaagctgg agagtgtgaa tgccgaactg aaggcccaaa ttgaggagct
      481 caagaatgag aagcagcatt tgatatacat gctcaacctg caccggccca catgcattgt
      541 ccgggctcag aacgggagga ctccagaaga tgagagaaac ctttttatcc aacagataaa
      601 agagggaaca ttgcagagct aagcagccgt ggtatggggc aactgcggag tcctcatcga
      661 atcctccttt tacatccgaa accctgaagc cattggagat ctgacttcct gtgcacctct
      721 tgaatcccag cagcaaagaa ccatcaaggt gggagggccc tcggtgactt tccactctac
      781 cccagagtgg actttggacc agggcaacaa gggcatcttt ttccttaact ccagaattta
      841 ggtcttaaca tattggcctt ccttggattc tccagatggc ccctggttag ggtcctgcct
      901 gcctttcatc tggattctgc aaaaaccagg cctcccacca ttaggattca tgcagaagca
      961 tcatctgtac cttgggtggg tggggtgggg ccacctcctc tgctgccgct gccactgtca
     1021 cttgtagggg acgtggggtg agaatggcat tttgtgaagc tgtgcgatgg ctagggttgt
     1081 gctttctagc aaatatgctg ttctgtacag gaattaccgt gtgcaaggcg ttcgtttcaa
     1141 aactaggcgt tgtgctcttc tgacgtttgc gccacacacc accactgtga ctttctcatg
     1201 actttcctca gatctggttt ctgagaattt gcggcggggt gggtggtgtg tctatcatat
     1261 cagcacgtgc agtgtcttgc aaagtattca ggtggccaga agaggttgtc agccccggga
     1321 gaacagaatt gtgccagcct ggactgagtg cagttttgtg ccaacagaaa aggcctcttc
     1381 cccttggcac ccaagcatta acgcacgtcc tctgttgcaa actcagttat aatgtcacag
     1441 gaagaaagca gaaacagaat ccagcttctg aagggttagg attctctgct cagtgactta
     1501 ggtcaggaat tttttctagg ccggaagagc caaagaatat tccattttcc ttttcttgtg
     1561 gttgaaaacc acaatcagtg gagatgcatt tgaagccagg tgatgcctag gctttagcat
     1621 tattagatgt taatggcatt gtttctgtca tgcagatgtt tgtagaaatc gggcccagag
     1681 catttatagc tgtgagacag tcactcacac tggccacgag gactctggct actgtctgtt
     1741 taaattctga cgtttctgtg aaatcctcag agtgtttaat cctactcagt agtatcatta
     1801 caattttctg taaaagaaga tattacttat ttatcctagt attcctaacc tgtcaataga
     1861 ataaatattg gaaccaagac atggtgaact taa
//
LOCUS       XM_032651131            1869 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus activating transcription factor 3 (ATF3),
            transcript variant X4, mRNA.
ACCESSION   XM_032651131
VERSION     XM_032651131.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1869
                     /gene="ATF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 6 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763418"
     CDS             224..598
                     /gene="ATF3"
                     /codon_start=1
                     /product="cyclic AMP-dependent transcription factor ATF-3
                     isoform X3"
                     /protein_id="XP_032507022.1"
                     /db_xref="GeneID:116763418"
                     /translation="MSSALESVTVSSRPLEMSVTKAEVAPEEDERKKRRRERNKIAAA
                     KCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQN
                     GRTPEDERNLFIQQIKEGTLQS"
     misc_feature    338..499
                     /gene="ATF3"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cl21462"
                     /db_xref="CDD:473870"
     misc_feature    338..472
                     /gene="ATF3"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269870"
     misc_feature    order(371..373,380..385,392..397,401..406,413..418,
                     422..427,434..439,443..448,455..460,464..469)
                     /gene="ATF3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269870"
ORIGIN      
        1 gcacgcagcg aggcgcacac tgcacagcgc tctccccgcg ccgccgctcc agcggacccg
       61 ccagcccgcg cgccggctgt gcgccctctg tgctcgcccg ccggccccac aaacagcccg
      121 accccacccc gaccccgccc gccctccgga ccctgggcgc cccgagtgga gccaggagga
      181 agagctgagg ttcgccatcc agagcaagca cctctgccac cggatgtcct cggcgctgga
      241 gtcagtcacc gtcagcagca gacccctcga gatgtcagtc accaaagccg aggtagcccc
      301 tgaagaagat gaaaggaaaa agaggcgacg ggaaagaaat aagattgcag ctgccaagtg
      361 ccgaaacaag aagaaggaga agacagagtg cctgcagaag gagtcagaga agctggagag
      421 tgtgaatgcc gaactgaagg cccaaattga ggagctcaag aatgagaagc agcatttgat
      481 atacatgctc aacctgcacc ggcccacatg cattgtccgg gctcagaacg ggaggactcc
      541 agaagatgag agaaaccttt ttatccaaca gataaaagag ggaacattgc agagctaagc
      601 agccgtggta tggggcaact gcggagtcct catcgaatcc tccttttaca tccgaaaccc
      661 tgaagccatt ggagatctga cttcctgtgc acctcttgaa tcccagcagc aaagaaccat
      721 caaggtggga gggccctcgg tgactttcca ctctacccca gagtggactt tggaccaggg
      781 caacaagggc atctttttcc ttaactccag aatttaggtc ttaacatatt ggccttcctt
      841 ggattctcca gatggcccct ggttagggtc ctgcctgcct ttcatctgga ttctgcaaaa
      901 accaggcctc ccaccattag gattcatgca gaagcatcat ctgtaccttg ggtgggtggg
      961 gtggggccac ctcctctgct gccgctgcca ctgtcacttg taggggacgt ggggtgagaa
     1021 tggcattttg tgaagctgtg cgatggctag ggttgtgctt tctagcaaat atgctgttct
     1081 gtacaggaat taccgtgtgc aaggcgttcg tttcaaaact aggcgttgtg ctcttctgac
     1141 gtttgcgcca cacaccacca ctgtgacttt ctcatgactt tcctcagatc tggtttctga
     1201 gaatttgcgg cggggtgggt ggtgtgtcta tcatatcagc acgtgcagtg tcttgcaaag
     1261 tattcaggtg gccagaagag gttgtcagcc ccgggagaac agaattgtgc cagcctggac
     1321 tgagtgcagt tttgtgccaa cagaaaaggc ctcttcccct tggcacccaa gcattaacgc
     1381 acgtcctctg ttgcaaactc agttataatg tcacaggaag aaagcagaaa cagaatccag
     1441 cttctgaagg gttaggattc tctgctcagt gacttaggtc aggaattttt tctaggccgg
     1501 aagagccaaa gaatattcca ttttcctttt cttgtggttg aaaaccacaa tcagtggaga
     1561 tgcatttgaa gccaggtgat gcctaggctt tagcattatt agatgttaat ggcattgttt
     1621 ctgtcatgca gatgtttgta gaaatcgggc ccagagcatt tatagctgtg agacagtcac
     1681 tcacactggc cacgaggact ctggctactg tctgtttaaa ttctgacgtt tctgtgaaat
     1741 cctcagagtg tttaatccta ctcagtagta tcattacaat tttctgtaaa agaagatatt
     1801 acttatttat cctagtattc ctaacctgtc aatagaataa atattggaac caagacatgg
     1861 tgaacttaa
//
LOCUS       XR_004352523             890 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763430
            (LOC116763430), ncRNA.
ACCESSION   XR_004352523
VERSION     XR_004352523.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..890
                     /gene="LOC116763430"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116763430"
     ncRNA           1..890
                     /ncRNA_class="lncRNA"
                     /gene="LOC116763430"
                     /product="uncharacterized LOC116763430"
                     /db_xref="GeneID:116763430"
ORIGIN      
        1 tccaagttta ttctttcaga gccccagttt ccctctctgt cgaacgtgaa agtagatgaa
       61 ctaagcaaat tgatggtaaa tacttattaa tcctttcttt ttaaagtatg gaaacataaa
      121 cttggttaca gaaaactatt tttaatgcac ttgttaagag aacttacagt tccactgatg
      181 atttacatgc gtttctcaga tcaatgtttc ttgccatcgc cacttccccc ttccttcctc
      241 tctaattcgt tgttgtccat ggcagcttta aaactgtctt aagtttccta acggctgatt
      301 ggtggctcat ccagaaggta aatgcaagga aattcatccc cctccaccaa gacaaggaag
      361 atagattatc tcctgaaaga agtggtaaat ggtacttccc ccagatgctc tgtacagttt
      421 aggaactgcc cctgctatgt agttaaagca gcaaaattag gatgcctgtg tcacaggtga
      481 tagtttaaag gaactataca tgagttcaaa ggagcaggca tgcttcatgc gcatgaacgt
      541 tcaaggaagc gaggatgtct ctgaaaaatg gcattggtgg cggagtagcc ggtttttatt
      601 cccagcctgt gagtgttaca tatgtgcaca gggaaagagc aagggaccct ggttctgttc
      661 cagacctaag gaatcatatg ctctggagat tccagaaaat taggtggact gttttctttg
      721 aattatcaca cctatcctgt ctgaagttat actctctctt cctccccatc ctcactgcca
      781 ttcttttcca aatttgaaat acctgtttgc aacaatgaga cacaaacttg gaccttataa
      841 gagatgtaat tcaagtgaac acgaggagtt ctgaagagca cacttctgaa
//
LOCUS       XM_032651153            1032 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ALX homeobox 3 (ALX3), mRNA.
ACCESSION   XM_032651153
VERSION     XM_032651153.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1032
                     /gene="ALX3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins"
                     /db_xref="GeneID:116763433"
     CDS             1..1032
                     /gene="ALX3"
                     /codon_start=1
                     /product="homeobox protein aristaless-like 3"
                     /protein_id="XP_032507044.1"
                     /db_xref="GeneID:116763433"
                     /translation="MDPESCAPFGVGPGPRPYAAAGDEPPGPQGTPAAAPHLHPAPPR
                     GPRLTRFPACGPLEPYLPEPAKPPAKYLQDLGPSPALNGGHFYEGPAEAEEKASKAAS
                     FPQLPLDCRGGPRDGPSNLPGSPGPCLASLRVPLSPGLPDSMELAKNKSKKRRNRTTF
                     STFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQ
                     EGRNPFTSAYDISMLPRTDSHPQLQNSLWPSPGSGSPRGPCLMSPEGIPSPCMSPYSH
                     SHGNVAGFMGVPASPGAHPGIYSIHGFSPALGGPSFEPSPDGDYKSPSLISLRVKSKE
                     PPSLLNWTT"
     misc_feature    <19..>375
                     /gene="ALX3"
                     /note="DNA polymerase III subunits gamma and tau;
                     Provisional; Region: PRK14959"
                     /db_xref="CDD:184923"
     misc_feature    460..630
                     /gene="ALX3"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 atggacccgg agagctgcgc gcctttcggc gtggggcccg ggcctcgccc ctacgcggcc
       61 gccggggatg agcctccggg cccccagggg accccggccg ccgcgcctca cctgcaccct
      121 gcgccacccc gcggcccacg gctgacccgc tttccggcct gcgggcccct ggagccctac
      181 ctcccggagc cggccaagcc gcccgccaag tacctgcagg acctcggccc cagcccggcg
      241 ctcaacggcg gccacttcta cgagggcccc gcggaagctg aggagaaggc ctccaaagct
      301 gccagcttcc cccagctgcc cttggactgc cgagggggcc cccgagacgg gccctctaac
      361 ttgccaggct ccccaggccc ctgcttggcc agcctgcgtg tccctctgtc cccgggactc
      421 cctgactcca tggagttggc caagaacaag agcaagaagc gccgtaaccg cacgaccttc
      481 agcacgttcc agctggagga gctggagaaa gtcttccaga aaacccacta ccctgatgtg
      541 tatgcccggg agcagctggc tctgcgcacg gacctcaccg aggcccgggt acaggtctgg
      601 tttcagaacc gcagagccaa gtggcggaag cgtgagcgtt atgggaagat ccaggagggg
      661 cggaacccct tcacgtctgc ctatgacatc tccatgctgc cccgaaccga cagccatccc
      721 cagctgcaga actccctgtg gcccagtcca gggtctggga gccccagggg gccctgcctc
      781 atgtctccag agggcatccc ctccccatgc atgtctccat actcccactc tcatgggaat
      841 gtggctggct tcatgggggt accagcctct cctggagccc accctggcat ctactccatc
      901 catggctttt cccctgccct agggggcccc agctttgagc cctccccgga tggcgactat
      961 aagtctccaa gcctcatctc actcagggtg aagtccaagg agccacccag cctgctgaac
     1021 tggaccacat ga
//
LOCUS       XM_032651177            3094 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Scm polycomb group protein homolog 1
            (SCMH1), transcript variant X1, mRNA.
ACCESSION   XM_032651177
VERSION     XM_032651177.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3094
                     /gene="SCMH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763444"
     CDS             133..2094
                     /gene="SCMH1"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X1"
                     /protein_id="XP_032507068.1"
                     /db_xref="GeneID:116763444"
                     /translation="MQKSDPRKVIDWNDVRKHKYGHLSESASQYQEATDILELGHFTW
                     DKYLKETCSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARL
                     RLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNG
                     AEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGW
                     RGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPYPASEANTEKPSIHSNT
                     KTALEPQPGQRGRKPGKKRGRTPKPLIPHPISTPSKSAEPLKFPKKRGPKPGSKRKPR
                     TLLNPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKV
                     QQLPDHFGPAQASVVLQQAVQACIDCAYHQKTVFGFLKQGHGGAVISAVFDREQHTLN
                     LPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTTTEYSHSHDRYLPGETFA
                     LGNSLGRSLEPHSDSMDSTLNPTNLVSTSQNLRNPGYRPLLPSCGLPLGTASAVRRFC
                     SRGSDRRDASRQSGRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRS
                     DTMMKYMGLKLGPALKLSYHIDRLKQGKF"
     misc_feature    253..645
                     /gene="SCMH1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1; Region:
                     MBT_SCMH1_rpt1; cd20105"
                     /db_xref="CDD:439095"
     misc_feature    658..882
                     /gene="SCMH1"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1 (SCMH1) and
                     similar proteins; Region: MBT_SCMH1_rpt2; cd20108"
                     /db_xref="CDD:439098"
     misc_feature    order(703..705,712..714,718..723,727..729,775..777,
                     784..786,796..798,874..882)
                     /gene="SCMH1"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:439098"
     misc_feature    985..1146
                     /gene="SCMH1"
                     /note="RNA binding Region; Region: RBR; pfam17208"
                     /db_xref="CDD:465382"
     misc_feature    1246..1572
                     /gene="SCMH1"
                     /note="SLED domain; Region: SLED; pfam12140"
                     /db_xref="CDD:463469"
     misc_feature    1870..2082
                     /gene="SCMH1"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     Region: SAM_Scm; cd09578"
                     /db_xref="CDD:188977"
     misc_feature    order(1927..1929,2032..2043,2047..2052,2059..2061,
                     2068..2070)
                     /gene="SCMH1"
                     /note="oligomer interface EH [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
     misc_feature    order(1963..1977,1981..1986,1993..1998,2005..2010,
                     2014..2025)
                     /gene="SCMH1"
                     /note="oligomer interface ML [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
ORIGIN      
        1 tcctccctag ctcgctgcgc agcggaaaca tggcggcggg cagggagtga gccgctccgc
       61 gtcgtcgctg cgcccgcaga tgtctccatc ttgctaagga ggaaattcct attgggtata
      121 gctgatggta ccatgcaaaa atcagatcct cgaaaagtaa tagactggaa tgatgttaga
      181 aaacataaat atggtcacct atcagagtca gcatcccaat atcaagaagc tactgacatc
      241 ctggagctag gtcattttac ctgggacaaa tacctaaaag aaacatgttc agtcccagcg
      301 cctgtccatt gcttcaagca gtcctacaca cctccaagca acgagttcaa gatcagtatg
      361 aaattggaag cacaggatcc caggaacacc acatctacct gtattgccac agtagttgga
      421 ctgacaggcg ctcgcctccg ccttcgcctt gatggcagcg acaacaagaa tgacttctgg
      481 cgtctggttg actcagctga aatccagcct atcgggaatt gtgagaagaa tgggggtatg
      541 ctgcagcctc cgctgggatt tcggctgaat gcttcctctt ggcccatgtt ccttttgaag
      601 acgctaaatg gagcagagat ggctcccatc aggattttcc acaaggaacc accatcacct
      661 tctcacaact tcttcaaaat gggaatgaag ctggaagctg tggacaggaa gaaccctcat
      721 ttcatttgcc cagccactat tggggaggtg cgaggctcag aggtgcttgt cacttttgat
      781 gggtggcgag gggcctttga ctactggtgc cgcttcgact cccgggacat cttccctgtg
      841 ggctggtgtt ccttgactgg agacaacctg cagccgcctg gcactaaagt tgtgattcca
      901 aagaatccct atcctgcatc cgaggcgaac actgagaagc ccagcatcca cagcaacacc
      961 aaaactgcct tggagcctca accagggcag agggggcgta aaccaggaaa gaagcggggc
     1021 cggacaccca agcccctaat tccccatccc atctctaccc catccaagtc agctgaacct
     1081 ttgaaattcc caaagaagag gggtcccaaa cctggcagta agaggaaacc tcggactttg
     1141 ctgaacccac cacccacctc accaacaacc agcacccctg aaccggatac cagcactgta
     1201 ccccaagatg ctgccaccat ccccagctca gccatgcagg cccccacagt ttgtatttac
     1261 ttgaacaaga atggcagcac aggcccccac ttagataaga agaaggtcca gcagctccct
     1321 gaccattttg ggccagccca agcctccgtg gtgttgcagc aggctgtgca ggcttgcatc
     1381 gactgtgctt atcaccagaa aaccgtcttc ggcttcctca aacagggtca cggtggtgca
     1441 gttatctcag ccgtgtttga ccgtgagcag cacaccctca acctcccagc cgtcaacagc
     1501 atcacctacg tcctccgctt cctggagaaa ctctgccaca accttcgcag tgacaatctg
     1561 tttggcaacc agccctttac acagactcac ttgtcactca ccaccacaga gtacagccac
     1621 agccacgaca ggtacctacc aggtgagacc tttgccctgg gaaatagtct gggccggtcc
     1681 ttggagccac actcagactc aatggactcc accttgaatc ccaccaacct tgtcagcacc
     1741 tcccaaaatc ttcgaaaccc tgggtaccgg cctttgcttc catcctgtgg cctcccattg
     1801 ggcactgcct cggctgtgcg caggttctgc tccagggggt cggatcgccg ggatgcctct
     1861 cgacagagtg gccgggaccc ctcctcgtgg acagtcgagg acgtgatgca gtttgtccgg
     1921 gaagctgatc ctcagcttgg accccatgct gacctctttc gcaaacacga gatcgacggc
     1981 aaggccctgc ttctgctgcg tagcgacacg atgatgaagt acatgggtct gaagctgggg
     2041 cctgcgctca agctctccta ccacatcgac cggctgaagc agggcaagtt ctgaacaggg
     2101 agacgcagcc tagacgaccg agggaccgag cagaggggcc atccttctcc caggaaggag
     2161 ggccatcggc cccctcccag gcacctcagt ggggtccgag gctgcctcag gactccagga
     2221 ggccgtgtgg agctgcaagc actgcccctc ctgccatggt atgtccttcc atgaagggcc
     2281 gagacgggca cggggcccag ggttgccgct gctcttcccc tcagccctgc ctcggctctg
     2341 aggtctcctg tatttattgc tcaggcctgg ccggcctctc cccaggaatt tagactgaac
     2401 gccttccaag tgatggagga aggggctgac ccctgaggcc tcggaagacg gggccccgaa
     2461 gtgacactcg tgcccggtcc cctcaccacc cgctgggcct ggtgtggctc cccattaccc
     2521 catggctcct gccttcttct cacgagatcc gcggactcca aactcatggt gcagacctct
     2581 acctttttta agaaaagatc ttttcttatt aatttattgt ttctggcact tgggcaagcc
     2641 ctccagttca tacccctctc gcttcagaca ctgggtttca ggaggaggga gactgcccgg
     2701 ccccggcccc agacaggccc tctccagagc ggtgtggccc cttttcagag gacattacct
     2761 agggtccctg tccctctgcc tctcttcctc cactgggccc tctgcggcct cggcctcatc
     2821 tgtgggaatg ggagaccctg ccctgcactg tccccaccgc agctcccttg ccctggccag
     2881 aatctctgct gaagaaggtc gggcccaatg attttaagcc aatacggccc taaaatggat
     2941 gggagaaagg ggtctctagg ctggagtctg gttggaccca ctccactgtc cacatgcttc
     3001 ctttgtaagc aagtcagcag cacagctgcc cccgctgcca tctggactta ttttatgtca
     3061 atttgtttat aaataaaaaa caatacagat gcca
//
LOCUS       XM_032651184            3031 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Scm polycomb group protein homolog 1
            (SCMH1), transcript variant X2, mRNA.
ACCESSION   XM_032651184
VERSION     XM_032651184.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3031
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3031
                     /gene="SCMH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763444"
     CDS             70..2031
                     /gene="SCMH1"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X1"
                     /protein_id="XP_032507075.1"
                     /db_xref="GeneID:116763444"
                     /translation="MQKSDPRKVIDWNDVRKHKYGHLSESASQYQEATDILELGHFTW
                     DKYLKETCSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARL
                     RLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNG
                     AEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGW
                     RGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPYPASEANTEKPSIHSNT
                     KTALEPQPGQRGRKPGKKRGRTPKPLIPHPISTPSKSAEPLKFPKKRGPKPGSKRKPR
                     TLLNPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKV
                     QQLPDHFGPAQASVVLQQAVQACIDCAYHQKTVFGFLKQGHGGAVISAVFDREQHTLN
                     LPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTTTEYSHSHDRYLPGETFA
                     LGNSLGRSLEPHSDSMDSTLNPTNLVSTSQNLRNPGYRPLLPSCGLPLGTASAVRRFC
                     SRGSDRRDASRQSGRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRS
                     DTMMKYMGLKLGPALKLSYHIDRLKQGKF"
     misc_feature    190..582
                     /gene="SCMH1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1; Region:
                     MBT_SCMH1_rpt1; cd20105"
                     /db_xref="CDD:439095"
     misc_feature    595..819
                     /gene="SCMH1"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1 (SCMH1) and
                     similar proteins; Region: MBT_SCMH1_rpt2; cd20108"
                     /db_xref="CDD:439098"
     misc_feature    order(640..642,649..651,655..660,664..666,712..714,
                     721..723,733..735,811..819)
                     /gene="SCMH1"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:439098"
     misc_feature    922..1083
                     /gene="SCMH1"
                     /note="RNA binding Region; Region: RBR; pfam17208"
                     /db_xref="CDD:465382"
     misc_feature    1183..1509
                     /gene="SCMH1"
                     /note="SLED domain; Region: SLED; pfam12140"
                     /db_xref="CDD:463469"
     misc_feature    1807..2019
                     /gene="SCMH1"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     Region: SAM_Scm; cd09578"
                     /db_xref="CDD:188977"
     misc_feature    order(1864..1866,1969..1980,1984..1989,1996..1998,
                     2005..2007)
                     /gene="SCMH1"
                     /note="oligomer interface EH [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
     misc_feature    order(1900..1914,1918..1923,1930..1935,1942..1947,
                     1951..1962)
                     /gene="SCMH1"
                     /note="oligomer interface ML [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
ORIGIN      
        1 tcagcatgag atagagatgt ctccatcttg ctaaggagga aattcctatt gggtatagct
       61 gatggtacca tgcaaaaatc agatcctcga aaagtaatag actggaatga tgttagaaaa
      121 cataaatatg gtcacctatc agagtcagca tcccaatatc aagaagctac tgacatcctg
      181 gagctaggtc attttacctg ggacaaatac ctaaaagaaa catgttcagt cccagcgcct
      241 gtccattgct tcaagcagtc ctacacacct ccaagcaacg agttcaagat cagtatgaaa
      301 ttggaagcac aggatcccag gaacaccaca tctacctgta ttgccacagt agttggactg
      361 acaggcgctc gcctccgcct tcgccttgat ggcagcgaca acaagaatga cttctggcgt
      421 ctggttgact cagctgaaat ccagcctatc gggaattgtg agaagaatgg gggtatgctg
      481 cagcctccgc tgggatttcg gctgaatgct tcctcttggc ccatgttcct tttgaagacg
      541 ctaaatggag cagagatggc tcccatcagg attttccaca aggaaccacc atcaccttct
      601 cacaacttct tcaaaatggg aatgaagctg gaagctgtgg acaggaagaa ccctcatttc
      661 atttgcccag ccactattgg ggaggtgcga ggctcagagg tgcttgtcac ttttgatggg
      721 tggcgagggg cctttgacta ctggtgccgc ttcgactccc gggacatctt ccctgtgggc
      781 tggtgttcct tgactggaga caacctgcag ccgcctggca ctaaagttgt gattccaaag
      841 aatccctatc ctgcatccga ggcgaacact gagaagccca gcatccacag caacaccaaa
      901 actgccttgg agcctcaacc agggcagagg gggcgtaaac caggaaagaa gcggggccgg
      961 acacccaagc ccctaattcc ccatcccatc tctaccccat ccaagtcagc tgaacctttg
     1021 aaattcccaa agaagagggg tcccaaacct ggcagtaaga ggaaacctcg gactttgctg
     1081 aacccaccac ccacctcacc aacaaccagc acccctgaac cggataccag cactgtaccc
     1141 caagatgctg ccaccatccc cagctcagcc atgcaggccc ccacagtttg tatttacttg
     1201 aacaagaatg gcagcacagg cccccactta gataagaaga aggtccagca gctccctgac
     1261 cattttgggc cagcccaagc ctccgtggtg ttgcagcagg ctgtgcaggc ttgcatcgac
     1321 tgtgcttatc accagaaaac cgtcttcggc ttcctcaaac agggtcacgg tggtgcagtt
     1381 atctcagccg tgtttgaccg tgagcagcac accctcaacc tcccagccgt caacagcatc
     1441 acctacgtcc tccgcttcct ggagaaactc tgccacaacc ttcgcagtga caatctgttt
     1501 ggcaaccagc cctttacaca gactcacttg tcactcacca ccacagagta cagccacagc
     1561 cacgacaggt acctaccagg tgagaccttt gccctgggaa atagtctggg ccggtccttg
     1621 gagccacact cagactcaat ggactccacc ttgaatccca ccaaccttgt cagcacctcc
     1681 caaaatcttc gaaaccctgg gtaccggcct ttgcttccat cctgtggcct cccattgggc
     1741 actgcctcgg ctgtgcgcag gttctgctcc agggggtcgg atcgccggga tgcctctcga
     1801 cagagtggcc gggacccctc ctcgtggaca gtcgaggacg tgatgcagtt tgtccgggaa
     1861 gctgatcctc agcttggacc ccatgctgac ctctttcgca aacacgagat cgacggcaag
     1921 gccctgcttc tgctgcgtag cgacacgatg atgaagtaca tgggtctgaa gctggggcct
     1981 gcgctcaagc tctcctacca catcgaccgg ctgaagcagg gcaagttctg aacagggaga
     2041 cgcagcctag acgaccgagg gaccgagcag aggggccatc cttctcccag gaaggagggc
     2101 catcggcccc ctcccaggca cctcagtggg gtccgaggct gcctcaggac tccaggaggc
     2161 cgtgtggagc tgcaagcact gcccctcctg ccatggtatg tccttccatg aagggccgag
     2221 acgggcacgg ggcccagggt tgccgctgct cttcccctca gccctgcctc ggctctgagg
     2281 tctcctgtat ttattgctca ggcctggccg gcctctcccc aggaatttag actgaacgcc
     2341 ttccaagtga tggaggaagg ggctgacccc tgaggcctcg gaagacgggg ccccgaagtg
     2401 acactcgtgc ccggtcccct caccacccgc tgggcctggt gtggctcccc attaccccat
     2461 ggctcctgcc ttcttctcac gagatccgcg gactccaaac tcatggtgca gacctctacc
     2521 ttttttaaga aaagatcttt tcttattaat ttattgtttc tggcacttgg gcaagccctc
     2581 cagttcatac ccctctcgct tcagacactg ggtttcagga ggagggagac tgcccggccc
     2641 cggccccaga caggccctct ccagagcggt gtggcccctt ttcagaggac attacctagg
     2701 gtccctgtcc ctctgcctct cttcctccac tgggccctct gcggcctcgg cctcatctgt
     2761 gggaatggga gaccctgccc tgcactgtcc ccaccgcagc tcccttgccc tggccagaat
     2821 ctctgctgaa gaaggtcggg cccaatgatt ttaagccaat acggccctaa aatggatggg
     2881 agaaaggggt ctctaggctg gagtctggtt ggacccactc cactgtccac atgcttcctt
     2941 tgtaagcaag tcagcagcac agctgccccc gctgccatct ggacttattt tatgtcaatt
     3001 tgtttataaa taaaaaacaa tacagatgcc a
//
LOCUS       XM_032651191            3216 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Scm polycomb group protein homolog 1
            (SCMH1), transcript variant X3, mRNA.
ACCESSION   XM_032651191
VERSION     XM_032651191.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3216
                     /gene="SCMH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 9 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763444"
     CDS             267..2216
                     /gene="SCMH1"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X2"
                     /protein_id="XP_032507082.1"
                     /db_xref="GeneID:116763444"
                     /translation="MQPSVIDWNDVRKHKYGHLSESASQYQEATDILELGHFTWDKYL
                     KETCSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRL
                     DGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMA
                     PIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAF
                     DYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPYPASEANTEKPSIHSNTKTAL
                     EPQPGQRGRKPGKKRGRTPKPLIPHPISTPSKSAEPLKFPKKRGPKPGSKRKPRTLLN
                     PPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLP
                     DHFGPAQASVVLQQAVQACIDCAYHQKTVFGFLKQGHGGAVISAVFDREQHTLNLPAV
                     NSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTTTEYSHSHDRYLPGETFALGNS
                     LGRSLEPHSDSMDSTLNPTNLVSTSQNLRNPGYRPLLPSCGLPLGTASAVRRFCSRGS
                     DRRDASRQSGRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDTMM
                     KYMGLKLGPALKLSYHIDRLKQGKF"
     misc_feature    375..767
                     /gene="SCMH1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1; Region:
                     MBT_SCMH1_rpt1; cd20105"
                     /db_xref="CDD:439095"
     misc_feature    780..1004
                     /gene="SCMH1"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1 (SCMH1) and
                     similar proteins; Region: MBT_SCMH1_rpt2; cd20108"
                     /db_xref="CDD:439098"
     misc_feature    order(825..827,834..836,840..845,849..851,897..899,
                     906..908,918..920,996..1004)
                     /gene="SCMH1"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:439098"
     misc_feature    1107..1268
                     /gene="SCMH1"
                     /note="RNA binding Region; Region: RBR; pfam17208"
                     /db_xref="CDD:465382"
     misc_feature    1368..1694
                     /gene="SCMH1"
                     /note="SLED domain; Region: SLED; pfam12140"
                     /db_xref="CDD:463469"
     misc_feature    1992..2204
                     /gene="SCMH1"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     Region: SAM_Scm; cd09578"
                     /db_xref="CDD:188977"
     misc_feature    order(2049..2051,2154..2165,2169..2174,2181..2183,
                     2190..2192)
                     /gene="SCMH1"
                     /note="oligomer interface EH [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
     misc_feature    order(2085..2099,2103..2108,2115..2120,2127..2132,
                     2136..2147)
                     /gene="SCMH1"
                     /note="oligomer interface ML [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
ORIGIN      
        1 agctcgctgc gcagcggaaa catggcggcg ggcagggagt gagccgctcc gcgtcgtcgc
       61 tgcgcccgca gatgtctcca tcttgctaag gaggaaattc ctattgggta tagctgatgg
      121 taccatgcaa aaatcagatc ctcgaaaaga tggagaaatt aacatacaga gaaactgact
      181 tgtcagaggt cagagcaagg tattggtgga tccaggggta aatcccaaac ctcttaactc
      241 cctgaccagt ttttagtcca ttgactatgc aacctagcgt aatagactgg aatgatgtta
      301 gaaaacataa atatggtcac ctatcagagt cagcatccca atatcaagaa gctactgaca
      361 tcctggagct aggtcatttt acctgggaca aatacctaaa agaaacatgt tcagtcccag
      421 cgcctgtcca ttgcttcaag cagtcctaca cacctccaag caacgagttc aagatcagta
      481 tgaaattgga agcacaggat cccaggaaca ccacatctac ctgtattgcc acagtagttg
      541 gactgacagg cgctcgcctc cgccttcgcc ttgatggcag cgacaacaag aatgacttct
      601 ggcgtctggt tgactcagct gaaatccagc ctatcgggaa ttgtgagaag aatgggggta
      661 tgctgcagcc tccgctggga tttcggctga atgcttcctc ttggcccatg ttccttttga
      721 agacgctaaa tggagcagag atggctccca tcaggatttt ccacaaggaa ccaccatcac
      781 cttctcacaa cttcttcaaa atgggaatga agctggaagc tgtggacagg aagaaccctc
      841 atttcatttg cccagccact attggggagg tgcgaggctc agaggtgctt gtcacttttg
      901 atgggtggcg aggggccttt gactactggt gccgcttcga ctcccgggac atcttccctg
      961 tgggctggtg ttccttgact ggagacaacc tgcagccgcc tggcactaaa gttgtgattc
     1021 caaagaatcc ctatcctgca tccgaggcga acactgagaa gcccagcatc cacagcaaca
     1081 ccaaaactgc cttggagcct caaccagggc agagggggcg taaaccagga aagaagcggg
     1141 gccggacacc caagccccta attccccatc ccatctctac cccatccaag tcagctgaac
     1201 ctttgaaatt cccaaagaag aggggtccca aacctggcag taagaggaaa cctcggactt
     1261 tgctgaaccc accacccacc tcaccaacaa ccagcacccc tgaaccggat accagcactg
     1321 taccccaaga tgctgccacc atccccagct cagccatgca ggcccccaca gtttgtattt
     1381 acttgaacaa gaatggcagc acaggccccc acttagataa gaagaaggtc cagcagctcc
     1441 ctgaccattt tgggccagcc caagcctccg tggtgttgca gcaggctgtg caggcttgca
     1501 tcgactgtgc ttatcaccag aaaaccgtct tcggcttcct caaacagggt cacggtggtg
     1561 cagttatctc agccgtgttt gaccgtgagc agcacaccct caacctccca gccgtcaaca
     1621 gcatcaccta cgtcctccgc ttcctggaga aactctgcca caaccttcgc agtgacaatc
     1681 tgtttggcaa ccagcccttt acacagactc acttgtcact caccaccaca gagtacagcc
     1741 acagccacga caggtaccta ccaggtgaga cctttgccct gggaaatagt ctgggccggt
     1801 ccttggagcc acactcagac tcaatggact ccaccttgaa tcccaccaac cttgtcagca
     1861 cctcccaaaa tcttcgaaac cctgggtacc ggcctttgct tccatcctgt ggcctcccat
     1921 tgggcactgc ctcggctgtg cgcaggttct gctccagggg gtcggatcgc cgggatgcct
     1981 ctcgacagag tggccgggac ccctcctcgt ggacagtcga ggacgtgatg cagtttgtcc
     2041 gggaagctga tcctcagctt ggaccccatg ctgacctctt tcgcaaacac gagatcgacg
     2101 gcaaggccct gcttctgctg cgtagcgaca cgatgatgaa gtacatgggt ctgaagctgg
     2161 ggcctgcgct caagctctcc taccacatcg accggctgaa gcagggcaag ttctgaacag
     2221 ggagacgcag cctagacgac cgagggaccg agcagagggg ccatccttct cccaggaagg
     2281 agggccatcg gccccctccc aggcacctca gtggggtccg aggctgcctc aggactccag
     2341 gaggccgtgt ggagctgcaa gcactgcccc tcctgccatg gtatgtcctt ccatgaaggg
     2401 ccgagacggg cacggggccc agggttgccg ctgctcttcc cctcagccct gcctcggctc
     2461 tgaggtctcc tgtatttatt gctcaggcct ggccggcctc tccccaggaa tttagactga
     2521 acgccttcca agtgatggag gaaggggctg acccctgagg cctcggaaga cggggccccg
     2581 aagtgacact cgtgcccggt cccctcacca cccgctgggc ctggtgtggc tccccattac
     2641 cccatggctc ctgccttctt ctcacgagat ccgcggactc caaactcatg gtgcagacct
     2701 ctaccttttt taagaaaaga tcttttctta ttaatttatt gtttctggca cttgggcaag
     2761 ccctccagtt catacccctc tcgcttcaga cactgggttt caggaggagg gagactgccc
     2821 ggccccggcc ccagacaggc cctctccaga gcggtgtggc cccttttcag aggacattac
     2881 ctagggtccc tgtccctctg cctctcttcc tccactgggc cctctgcggc ctcggcctca
     2941 tctgtgggaa tgggagaccc tgccctgcac tgtccccacc gcagctccct tgccctggcc
     3001 agaatctctg ctgaagaagg tcgggcccaa tgattttaag ccaatacggc cctaaaatgg
     3061 atgggagaaa ggggtctcta ggctggagtc tggttggacc cactccactg tccacatgct
     3121 tcctttgtaa gcaagtcagc agcacagctg cccccgctgc catctggact tattttatgt
     3181 caatttgttt ataaataaaa aacaatacag atgcca
//
LOCUS       XM_032651200            3543 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Scm polycomb group protein homolog 1
            (SCMH1), transcript variant X4, mRNA.
ACCESSION   XM_032651200
VERSION     XM_032651200.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3543
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3543
                     /gene="SCMH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763444"
     CDS             624..2543
                     /gene="SCMH1"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X3"
                     /protein_id="XP_032507091.1"
                     /db_xref="GeneID:116763444"
                     /translation="MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETCSVPAPV
                     HCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFW
                     RLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPP
                     SPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRD
                     IFPVGWCSLTGDNLQPPGTKVVIPKNPYPASEANTEKPSIHSNTKTALEPQPGQRGRK
                     PGKKRGRTPKPLIPHPISTPSKSAEPLKFPKKRGPKPGSKRKPRTLLNPPPTSPTTST
                     PEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPAQASV
                     VLQQAVQACIDCAYHQKTVFGFLKQGHGGAVISAVFDREQHTLNLPAVNSITYVLRFL
                     EKLCHNLRSDNLFGNQPFTQTHLSLTTTEYSHSHDRYLPGETFALGNSLGRSLEPHSD
                     SMDSTLNPTNLVSTSQNLRNPGYRPLLPSCGLPLGTASAVRRFCSRGSDRRDASRQSG
                     RDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDTMMKYMGLKLGPA
                     LKLSYHIDRLKQGKF"
     misc_feature    702..1094
                     /gene="SCMH1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1; Region:
                     MBT_SCMH1_rpt1; cd20105"
                     /db_xref="CDD:439095"
     misc_feature    1107..1331
                     /gene="SCMH1"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1 (SCMH1) and
                     similar proteins; Region: MBT_SCMH1_rpt2; cd20108"
                     /db_xref="CDD:439098"
     misc_feature    order(1152..1154,1161..1163,1167..1172,1176..1178,
                     1224..1226,1233..1235,1245..1247,1323..1331)
                     /gene="SCMH1"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:439098"
     misc_feature    1434..1595
                     /gene="SCMH1"
                     /note="RNA binding Region; Region: RBR; pfam17208"
                     /db_xref="CDD:465382"
     misc_feature    1695..2021
                     /gene="SCMH1"
                     /note="SLED domain; Region: SLED; pfam12140"
                     /db_xref="CDD:463469"
     misc_feature    2319..2531
                     /gene="SCMH1"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     Region: SAM_Scm; cd09578"
                     /db_xref="CDD:188977"
     misc_feature    order(2376..2378,2481..2492,2496..2501,2508..2510,
                     2517..2519)
                     /gene="SCMH1"
                     /note="oligomer interface EH [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
     misc_feature    order(2412..2426,2430..2435,2442..2447,2454..2459,
                     2463..2474)
                     /gene="SCMH1"
                     /note="oligomer interface ML [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
ORIGIN      
        1 cggaaacatg gcggcgggca gggagtgagc cgctccgcgt cgtcgctgcg cccgcagatg
       61 tctccatctt gctaaggagg aaattcctat tgggtatagc tgatggtacc atgcaaaaat
      121 cagatcctcg aaaagatgga gaaattaaca tacagagaaa ctgacttgtc agaggtcaga
      181 gcaaggtatt ggtggatcca ggggtaaatc ccaaacctct taactccctg accagttttt
      241 agtccattga ctatgcaacc tagcgtaata gactggaatg atgttagaaa acataaatat
      301 ggtcacctat cagagtcagc atcccaatat caagaagcta ctgacatcct ggagctaggg
      361 ttgttaagaa gattacatga gctaatggat gtgaaaacat cttaaaaact ctcaaatact
      421 tttcaacttt ggaggattat tattttcatt tgttcagcga ctatcctcag actttaagtc
      481 aaatcttgtg acattctttg aagtgaagca ttctatgaat atgagctgaa gaaatgaatg
      541 aaatgaaata atgcagcatc tagtgctttt tgcatggccc aaaggggccc tgtgctgctc
      601 cactgcagag gaagcttcaa gaaatgctgg tttgctacag tgttttagct tgtgagagtc
      661 tctgggacct tccctgctcc atcatggggt cacctctagg tcattttacc tgggacaaat
      721 acctaaaaga aacatgttca gtcccagcgc ctgtccattg cttcaagcag tcctacacac
      781 ctccaagcaa cgagttcaag atcagtatga aattggaagc acaggatccc aggaacacca
      841 catctacctg tattgccaca gtagttggac tgacaggcgc tcgcctccgc cttcgccttg
      901 atggcagcga caacaagaat gacttctggc gtctggttga ctcagctgaa atccagccta
      961 tcgggaattg tgagaagaat gggggtatgc tgcagcctcc gctgggattt cggctgaatg
     1021 cttcctcttg gcccatgttc cttttgaaga cgctaaatgg agcagagatg gctcccatca
     1081 ggattttcca caaggaacca ccatcacctt ctcacaactt cttcaaaatg ggaatgaagc
     1141 tggaagctgt ggacaggaag aaccctcatt tcatttgccc agccactatt ggggaggtgc
     1201 gaggctcaga ggtgcttgtc acttttgatg ggtggcgagg ggcctttgac tactggtgcc
     1261 gcttcgactc ccgggacatc ttccctgtgg gctggtgttc cttgactgga gacaacctgc
     1321 agccgcctgg cactaaagtt gtgattccaa agaatcccta tcctgcatcc gaggcgaaca
     1381 ctgagaagcc cagcatccac agcaacacca aaactgcctt ggagcctcaa ccagggcaga
     1441 gggggcgtaa accaggaaag aagcggggcc ggacacccaa gcccctaatt ccccatccca
     1501 tctctacccc atccaagtca gctgaacctt tgaaattccc aaagaagagg ggtcccaaac
     1561 ctggcagtaa gaggaaacct cggactttgc tgaacccacc acccacctca ccaacaacca
     1621 gcacccctga accggatacc agcactgtac cccaagatgc tgccaccatc cccagctcag
     1681 ccatgcaggc ccccacagtt tgtatttact tgaacaagaa tggcagcaca ggcccccact
     1741 tagataagaa gaaggtccag cagctccctg accattttgg gccagcccaa gcctccgtgg
     1801 tgttgcagca ggctgtgcag gcttgcatcg actgtgctta tcaccagaaa accgtcttcg
     1861 gcttcctcaa acagggtcac ggtggtgcag ttatctcagc cgtgtttgac cgtgagcagc
     1921 acaccctcaa cctcccagcc gtcaacagca tcacctacgt cctccgcttc ctggagaaac
     1981 tctgccacaa ccttcgcagt gacaatctgt ttggcaacca gccctttaca cagactcact
     2041 tgtcactcac caccacagag tacagccaca gccacgacag gtacctacca ggtgagacct
     2101 ttgccctggg aaatagtctg ggccggtcct tggagccaca ctcagactca atggactcca
     2161 ccttgaatcc caccaacctt gtcagcacct cccaaaatct tcgaaaccct gggtaccggc
     2221 ctttgcttcc atcctgtggc ctcccattgg gcactgcctc ggctgtgcgc aggttctgct
     2281 ccagggggtc ggatcgccgg gatgcctctc gacagagtgg ccgggacccc tcctcgtgga
     2341 cagtcgagga cgtgatgcag tttgtccggg aagctgatcc tcagcttgga ccccatgctg
     2401 acctctttcg caaacacgag atcgacggca aggccctgct tctgctgcgt agcgacacga
     2461 tgatgaagta catgggtctg aagctggggc ctgcgctcaa gctctcctac cacatcgacc
     2521 ggctgaagca gggcaagttc tgaacaggga gacgcagcct agacgaccga gggaccgagc
     2581 agaggggcca tccttctccc aggaaggagg gccatcggcc ccctcccagg cacctcagtg
     2641 gggtccgagg ctgcctcagg actccaggag gccgtgtgga gctgcaagca ctgcccctcc
     2701 tgccatggta tgtccttcca tgaagggccg agacgggcac ggggcccagg gttgccgctg
     2761 ctcttcccct cagccctgcc tcggctctga ggtctcctgt atttattgct caggcctggc
     2821 cggcctctcc ccaggaattt agactgaacg ccttccaagt gatggaggaa ggggctgacc
     2881 cctgaggcct cggaagacgg ggccccgaag tgacactcgt gcccggtccc ctcaccaccc
     2941 gctgggcctg gtgtggctcc ccattacccc atggctcctg ccttcttctc acgagatccg
     3001 cggactccaa actcatggtg cagacctcta ccttttttaa gaaaagatct tttcttatta
     3061 atttattgtt tctggcactt gggcaagccc tccagttcat acccctctcg cttcagacac
     3121 tgggtttcag gaggagggag actgcccggc cccggcccca gacaggccct ctccagagcg
     3181 gtgtggcccc ttttcagagg acattaccta gggtccctgt ccctctgcct ctcttcctcc
     3241 actgggccct ctgcggcctc ggcctcatct gtgggaatgg gagaccctgc cctgcactgt
     3301 ccccaccgca gctcccttgc cctggccaga atctctgctg aagaaggtcg ggcccaatga
     3361 ttttaagcca atacggccct aaaatggatg ggagaaaggg gtctctaggc tggagtctgg
     3421 ttggacccac tccactgtcc acatgcttcc tttgtaagca agtcagcagc acagctgccc
     3481 ccgctgccat ctggacttat tttatgtcaa tttgtttata aataaaaaac aatacagatg
     3541 cca
//
LOCUS       XM_032651209            3093 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Scm polycomb group protein homolog 1
            (SCMH1), transcript variant X5, mRNA.
ACCESSION   XM_032651209
VERSION     XM_032651209.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3093
                     /gene="SCMH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763444"
     CDS             174..2093
                     /gene="SCMH1"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X3"
                     /protein_id="XP_032507100.1"
                     /db_xref="GeneID:116763444"
                     /translation="MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETCSVPAPV
                     HCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFW
                     RLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPP
                     SPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRD
                     IFPVGWCSLTGDNLQPPGTKVVIPKNPYPASEANTEKPSIHSNTKTALEPQPGQRGRK
                     PGKKRGRTPKPLIPHPISTPSKSAEPLKFPKKRGPKPGSKRKPRTLLNPPPTSPTTST
                     PEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPAQASV
                     VLQQAVQACIDCAYHQKTVFGFLKQGHGGAVISAVFDREQHTLNLPAVNSITYVLRFL
                     EKLCHNLRSDNLFGNQPFTQTHLSLTTTEYSHSHDRYLPGETFALGNSLGRSLEPHSD
                     SMDSTLNPTNLVSTSQNLRNPGYRPLLPSCGLPLGTASAVRRFCSRGSDRRDASRQSG
                     RDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDTMMKYMGLKLGPA
                     LKLSYHIDRLKQGKF"
     misc_feature    252..644
                     /gene="SCMH1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1; Region:
                     MBT_SCMH1_rpt1; cd20105"
                     /db_xref="CDD:439095"
     misc_feature    657..881
                     /gene="SCMH1"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1 (SCMH1) and
                     similar proteins; Region: MBT_SCMH1_rpt2; cd20108"
                     /db_xref="CDD:439098"
     misc_feature    order(702..704,711..713,717..722,726..728,774..776,
                     783..785,795..797,873..881)
                     /gene="SCMH1"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:439098"
     misc_feature    984..1145
                     /gene="SCMH1"
                     /note="RNA binding Region; Region: RBR; pfam17208"
                     /db_xref="CDD:465382"
     misc_feature    1245..1571
                     /gene="SCMH1"
                     /note="SLED domain; Region: SLED; pfam12140"
                     /db_xref="CDD:463469"
     misc_feature    1869..2081
                     /gene="SCMH1"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     Region: SAM_Scm; cd09578"
                     /db_xref="CDD:188977"
     misc_feature    order(1926..1928,2031..2042,2046..2051,2058..2060,
                     2067..2069)
                     /gene="SCMH1"
                     /note="oligomer interface EH [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
     misc_feature    order(1962..1976,1980..1985,1992..1997,2004..2009,
                     2013..2024)
                     /gene="SCMH1"
                     /note="oligomer interface ML [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
ORIGIN      
        1 atgcaaccta gcgtaataga ctggaatgat gttagaaaac ataaatatgg tcacctatca
       61 gagtcagcat cccaatatca agaagctact gacatcctgg agctagcatc tagtgctttt
      121 tgcatggccc aaaggggccc tgtgctgctc cactgcagag gaagcttcaa gaaatgctgg
      181 tttgctacag tgttttagct tgtgagagtc tctgggacct tccctgctcc atcatggggt
      241 cacctctagg tcattttacc tgggacaaat acctaaaaga aacatgttca gtcccagcgc
      301 ctgtccattg cttcaagcag tcctacacac ctccaagcaa cgagttcaag atcagtatga
      361 aattggaagc acaggatccc aggaacacca catctacctg tattgccaca gtagttggac
      421 tgacaggcgc tcgcctccgc cttcgccttg atggcagcga caacaagaat gacttctggc
      481 gtctggttga ctcagctgaa atccagccta tcgggaattg tgagaagaat gggggtatgc
      541 tgcagcctcc gctgggattt cggctgaatg cttcctcttg gcccatgttc cttttgaaga
      601 cgctaaatgg agcagagatg gctcccatca ggattttcca caaggaacca ccatcacctt
      661 ctcacaactt cttcaaaatg ggaatgaagc tggaagctgt ggacaggaag aaccctcatt
      721 tcatttgccc agccactatt ggggaggtgc gaggctcaga ggtgcttgtc acttttgatg
      781 ggtggcgagg ggcctttgac tactggtgcc gcttcgactc ccgggacatc ttccctgtgg
      841 gctggtgttc cttgactgga gacaacctgc agccgcctgg cactaaagtt gtgattccaa
      901 agaatcccta tcctgcatcc gaggcgaaca ctgagaagcc cagcatccac agcaacacca
      961 aaactgcctt ggagcctcaa ccagggcaga gggggcgtaa accaggaaag aagcggggcc
     1021 ggacacccaa gcccctaatt ccccatccca tctctacccc atccaagtca gctgaacctt
     1081 tgaaattccc aaagaagagg ggtcccaaac ctggcagtaa gaggaaacct cggactttgc
     1141 tgaacccacc acccacctca ccaacaacca gcacccctga accggatacc agcactgtac
     1201 cccaagatgc tgccaccatc cccagctcag ccatgcaggc ccccacagtt tgtatttact
     1261 tgaacaagaa tggcagcaca ggcccccact tagataagaa gaaggtccag cagctccctg
     1321 accattttgg gccagcccaa gcctccgtgg tgttgcagca ggctgtgcag gcttgcatcg
     1381 actgtgctta tcaccagaaa accgtcttcg gcttcctcaa acagggtcac ggtggtgcag
     1441 ttatctcagc cgtgtttgac cgtgagcagc acaccctcaa cctcccagcc gtcaacagca
     1501 tcacctacgt cctccgcttc ctggagaaac tctgccacaa ccttcgcagt gacaatctgt
     1561 ttggcaacca gccctttaca cagactcact tgtcactcac caccacagag tacagccaca
     1621 gccacgacag gtacctacca ggtgagacct ttgccctggg aaatagtctg ggccggtcct
     1681 tggagccaca ctcagactca atggactcca ccttgaatcc caccaacctt gtcagcacct
     1741 cccaaaatct tcgaaaccct gggtaccggc ctttgcttcc atcctgtggc ctcccattgg
     1801 gcactgcctc ggctgtgcgc aggttctgct ccagggggtc ggatcgccgg gatgcctctc
     1861 gacagagtgg ccgggacccc tcctcgtgga cagtcgagga cgtgatgcag tttgtccggg
     1921 aagctgatcc tcagcttgga ccccatgctg acctctttcg caaacacgag atcgacggca
     1981 aggccctgct tctgctgcgt agcgacacga tgatgaagta catgggtctg aagctggggc
     2041 ctgcgctcaa gctctcctac cacatcgacc ggctgaagca gggcaagttc tgaacaggga
     2101 gacgcagcct agacgaccga gggaccgagc agaggggcca tccttctccc aggaaggagg
     2161 gccatcggcc ccctcccagg cacctcagtg gggtccgagg ctgcctcagg actccaggag
     2221 gccgtgtgga gctgcaagca ctgcccctcc tgccatggta tgtccttcca tgaagggccg
     2281 agacgggcac ggggcccagg gttgccgctg ctcttcccct cagccctgcc tcggctctga
     2341 ggtctcctgt atttattgct caggcctggc cggcctctcc ccaggaattt agactgaacg
     2401 ccttccaagt gatggaggaa ggggctgacc cctgaggcct cggaagacgg ggccccgaag
     2461 tgacactcgt gcccggtccc ctcaccaccc gctgggcctg gtgtggctcc ccattacccc
     2521 atggctcctg ccttcttctc acgagatccg cggactccaa actcatggtg cagacctcta
     2581 ccttttttaa gaaaagatct tttcttatta atttattgtt tctggcactt gggcaagccc
     2641 tccagttcat acccctctcg cttcagacac tgggtttcag gaggagggag actgcccggc
     2701 cccggcccca gacaggccct ctccagagcg gtgtggcccc ttttcagagg acattaccta
     2761 gggtccctgt ccctctgcct ctcttcctcc actgggccct ctgcggcctc ggcctcatct
     2821 gtgggaatgg gagaccctgc cctgcactgt ccccaccgca gctcccttgc cctggccaga
     2881 atctctgctg aagaaggtcg ggcccaatga ttttaagcca atacggccct aaaatggatg
     2941 ggagaaaggg gtctctaggc tggagtctgg ttggacccac tccactgtcc acatgcttcc
     3001 tttgtaagca agtcagcagc acagctgccc ccgctgccat ctggacttat tttatgtcaa
     3061 tttgtttata aataaaaaac aatacagatg cca
//
LOCUS       XM_032651217            3329 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Scm polycomb group protein homolog 1
            (SCMH1), transcript variant X6, mRNA.
ACCESSION   XM_032651217
VERSION     XM_032651217.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3329
                     /gene="SCMH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763444"
     CDS             551..2329
                     /gene="SCMH1"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X4"
                     /protein_id="XP_032507108.1"
                     /db_xref="GeneID:116763444"
                     /translation="MQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLR
                     LDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEM
                     APIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGA
                     FDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPYPASEANTEKPSIHSNTKTA
                     LEPQPGQRGRKPGKKRGRTPKPLIPHPISTPSKSAEPLKFPKKRGPKPGSKRKPRTLL
                     NPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQL
                     PDHFGPAQASVVLQQAVQACIDCAYHQKTVFGFLKQGHGGAVISAVFDREQHTLNLPA
                     VNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTTTEYSHSHDRYLPGETFALGN
                     SLGRSLEPHSDSMDSTLNPTNLVSTSQNLRNPGYRPLLPSCGLPLGTASAVRRFCSRG
                     SDRRDASRQSGRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDTM
                     MKYMGLKLGPALKLSYHIDRLKQGKF"
     misc_feature    554..880
                     /gene="SCMH1"
                     /note="malignant brain tumor (MBT) repeat; Region: MBT;
                     cl45897"
                     /db_xref="CDD:459242"
     misc_feature    order(611..613,620..622,629..631,635..637,683..685,
                     692..694,704..706)
                     /gene="SCMH1"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:439080"
     misc_feature    893..1117
                     /gene="SCMH1"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1 (SCMH1) and
                     similar proteins; Region: MBT_SCMH1_rpt2; cd20108"
                     /db_xref="CDD:439098"
     misc_feature    order(938..940,947..949,953..958,962..964,1010..1012,
                     1019..1021,1031..1033,1109..1117)
                     /gene="SCMH1"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:439098"
     misc_feature    1220..1381
                     /gene="SCMH1"
                     /note="RNA binding Region; Region: RBR; pfam17208"
                     /db_xref="CDD:465382"
     misc_feature    1481..1807
                     /gene="SCMH1"
                     /note="SLED domain; Region: SLED; pfam12140"
                     /db_xref="CDD:463469"
     misc_feature    2105..2317
                     /gene="SCMH1"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     Region: SAM_Scm; cd09578"
                     /db_xref="CDD:188977"
     misc_feature    order(2162..2164,2267..2278,2282..2287,2294..2296,
                     2303..2305)
                     /gene="SCMH1"
                     /note="oligomer interface EH [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
     misc_feature    order(2198..2212,2216..2221,2228..2233,2240..2245,
                     2249..2260)
                     /gene="SCMH1"
                     /note="oligomer interface ML [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
ORIGIN      
        1 cggaaacatg gcggcgggca gggagtgagc cgctccgcgt cgtcgctgcg cccgcagatg
       61 tctccatctt gctaaggagg aaattcctat tgggtatagc tgatggtacc atgcaaaaat
      121 cagatcctcg aaaagatgga gaaattaaca tacagagaaa ctgacttgtc agaggtcaga
      181 gcaaggtatt ggtggatcca ggggtaaatc ccaaacctct taactccctg accagttttt
      241 agtccattga ctatgcaacc tagcgtaata gactggaatg atgttagaaa acataaatat
      301 ggtcacctat cagagtcagc atcccaatat caagaagcta ctgacatcct ggagctaggg
      361 ttgttaagaa gattacatga gctaatggat gtgaaaacat cttaaaaact ctcaaatact
      421 tttcaacttt ggaggattat tattttcatt tgttcagcga ctatcctcag actttaagtc
      481 aaatcttgtg acattctttg aagtgaagca ttctatgaat atgagctgaa gaaatgaatg
      541 aaatgaaata atgcagtcct acacacctcc aagcaacgag ttcaagatca gtatgaaatt
      601 ggaagcacag gatcccagga acaccacatc tacctgtatt gccacagtag ttggactgac
      661 aggcgctcgc ctccgccttc gccttgatgg cagcgacaac aagaatgact tctggcgtct
      721 ggttgactca gctgaaatcc agcctatcgg gaattgtgag aagaatgggg gtatgctgca
      781 gcctccgctg ggatttcggc tgaatgcttc ctcttggccc atgttccttt tgaagacgct
      841 aaatggagca gagatggctc ccatcaggat tttccacaag gaaccaccat caccttctca
      901 caacttcttc aaaatgggaa tgaagctgga agctgtggac aggaagaacc ctcatttcat
      961 ttgcccagcc actattgggg aggtgcgagg ctcagaggtg cttgtcactt ttgatgggtg
     1021 gcgaggggcc tttgactact ggtgccgctt cgactcccgg gacatcttcc ctgtgggctg
     1081 gtgttccttg actggagaca acctgcagcc gcctggcact aaagttgtga ttccaaagaa
     1141 tccctatcct gcatccgagg cgaacactga gaagcccagc atccacagca acaccaaaac
     1201 tgccttggag cctcaaccag ggcagagggg gcgtaaacca ggaaagaagc ggggccggac
     1261 acccaagccc ctaattcccc atcccatctc taccccatcc aagtcagctg aacctttgaa
     1321 attcccaaag aagaggggtc ccaaacctgg cagtaagagg aaacctcgga ctttgctgaa
     1381 cccaccaccc acctcaccaa caaccagcac ccctgaaccg gataccagca ctgtacccca
     1441 agatgctgcc accatcccca gctcagccat gcaggccccc acagtttgta tttacttgaa
     1501 caagaatggc agcacaggcc cccacttaga taagaagaag gtccagcagc tccctgacca
     1561 ttttgggcca gcccaagcct ccgtggtgtt gcagcaggct gtgcaggctt gcatcgactg
     1621 tgcttatcac cagaaaaccg tcttcggctt cctcaaacag ggtcacggtg gtgcagttat
     1681 ctcagccgtg tttgaccgtg agcagcacac cctcaacctc ccagccgtca acagcatcac
     1741 ctacgtcctc cgcttcctgg agaaactctg ccacaacctt cgcagtgaca atctgtttgg
     1801 caaccagccc tttacacaga ctcacttgtc actcaccacc acagagtaca gccacagcca
     1861 cgacaggtac ctaccaggtg agacctttgc cctgggaaat agtctgggcc ggtccttgga
     1921 gccacactca gactcaatgg actccacctt gaatcccacc aaccttgtca gcacctccca
     1981 aaatcttcga aaccctgggt accggccttt gcttccatcc tgtggcctcc cattgggcac
     2041 tgcctcggct gtgcgcaggt tctgctccag ggggtcggat cgccgggatg cctctcgaca
     2101 gagtggccgg gacccctcct cgtggacagt cgaggacgtg atgcagtttg tccgggaagc
     2161 tgatcctcag cttggacccc atgctgacct ctttcgcaaa cacgagatcg acggcaaggc
     2221 cctgcttctg ctgcgtagcg acacgatgat gaagtacatg ggtctgaagc tggggcctgc
     2281 gctcaagctc tcctaccaca tcgaccggct gaagcagggc aagttctgaa cagggagacg
     2341 cagcctagac gaccgaggga ccgagcagag gggccatcct tctcccagga aggagggcca
     2401 tcggccccct cccaggcacc tcagtggggt ccgaggctgc ctcaggactc caggaggccg
     2461 tgtggagctg caagcactgc ccctcctgcc atggtatgtc cttccatgaa gggccgagac
     2521 gggcacgggg cccagggttg ccgctgctct tcccctcagc cctgcctcgg ctctgaggtc
     2581 tcctgtattt attgctcagg cctggccggc ctctccccag gaatttagac tgaacgcctt
     2641 ccaagtgatg gaggaagggg ctgacccctg aggcctcgga agacggggcc ccgaagtgac
     2701 actcgtgccc ggtcccctca ccacccgctg ggcctggtgt ggctccccat taccccatgg
     2761 ctcctgcctt cttctcacga gatccgcgga ctccaaactc atggtgcaga cctctacctt
     2821 ttttaagaaa agatcttttc ttattaattt attgtttctg gcacttgggc aagccctcca
     2881 gttcataccc ctctcgcttc agacactggg tttcaggagg agggagactg cccggccccg
     2941 gccccagaca ggccctctcc agagcggtgt ggcccctttt cagaggacat tacctagggt
     3001 ccctgtccct ctgcctctct tcctccactg ggccctctgc ggcctcggcc tcatctgtgg
     3061 gaatgggaga ccctgccctg cactgtcccc accgcagctc ccttgccctg gccagaatct
     3121 ctgctgaaga aggtcgggcc caatgatttt aagccaatac ggccctaaaa tggatgggag
     3181 aaaggggtct ctaggctgga gtctggttgg acccactcca ctgtccacat gcttcctttg
     3241 taagcaagtc agcagcacag ctgcccccgc tgccatctgg acttatttta tgtcaatttg
     3301 tttataaata aaaaacaata cagatgcca
//
LOCUS       XM_032651226            3400 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Scm polycomb group protein homolog 1
            (SCMH1), transcript variant X7, mRNA.
ACCESSION   XM_032651226
VERSION     XM_032651226.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3400
                     /gene="SCMH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763444"
     CDS             664..2400
                     /gene="SCMH1"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X5"
                     /protein_id="XP_032507117.1"
                     /db_xref="GeneID:116763444"
                     /translation="MKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLV
                     DSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPS
                     HNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFP
                     VGWCSLTGDNLQPPGTKVVIPKNPYPASEANTEKPSIHSNTKTALEPQPGQRGRKPGK
                     KRGRTPKPLIPHPISTPSKSAEPLKFPKKRGPKPGSKRKPRTLLNPPPTSPTTSTPEP
                     DTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPAQASVVLQ
                     QAVQACIDCAYHQKTVFGFLKQGHGGAVISAVFDREQHTLNLPAVNSITYVLRFLEKL
                     CHNLRSDNLFGNQPFTQTHLSLTTTEYSHSHDRYLPGETFALGNSLGRSLEPHSDSMD
                     STLNPTNLVSTSQNLRNPGYRPLLPSCGLPLGTASAVRRFCSRGSDRRDASRQSGRDP
                     SSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDTMMKYMGLKLGPALKL
                     SYHIDRLKQGKF"
     misc_feature    <664..951
                     /gene="SCMH1"
                     /note="malignant brain tumor (MBT) repeat; Region: MBT;
                     cl45897"
                     /db_xref="CDD:459242"
     misc_feature    order(682..684,691..693,700..702,706..708,754..756,
                     763..765,775..777)
                     /gene="SCMH1"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:439080"
     misc_feature    964..1188
                     /gene="SCMH1"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1 (SCMH1) and
                     similar proteins; Region: MBT_SCMH1_rpt2; cd20108"
                     /db_xref="CDD:439098"
     misc_feature    order(1009..1011,1018..1020,1024..1029,1033..1035,
                     1081..1083,1090..1092,1102..1104,1180..1188)
                     /gene="SCMH1"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:439098"
     misc_feature    1291..1452
                     /gene="SCMH1"
                     /note="RNA binding Region; Region: RBR; pfam17208"
                     /db_xref="CDD:465382"
     misc_feature    1552..1878
                     /gene="SCMH1"
                     /note="SLED domain; Region: SLED; pfam12140"
                     /db_xref="CDD:463469"
     misc_feature    2176..2388
                     /gene="SCMH1"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     Region: SAM_Scm; cd09578"
                     /db_xref="CDD:188977"
     misc_feature    order(2233..2235,2338..2349,2353..2358,2365..2367,
                     2374..2376)
                     /gene="SCMH1"
                     /note="oligomer interface EH [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
     misc_feature    order(2269..2283,2287..2292,2299..2304,2311..2316,
                     2320..2331)
                     /gene="SCMH1"
                     /note="oligomer interface ML [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
ORIGIN      
        1 cggaaacatg gcggcgggca gggagtgagc cgctccgcgt cgtcgctgcg cccgcagatg
       61 tctccatctt gctaaggagg aaattcctat tgggtatagc tgatggtacc atgcaaaaat
      121 cagatcctcg aaaagatgga gaaattaaca tacagagaaa ctgacttgtc agaggtcaga
      181 gcaaggtatt ggtggatcca ggggtaaatc ccaaacctct taactccctg accagttttt
      241 agtccattga ctatgcaacc tagcgtaata gactggaatg atgttagaaa acataaatat
      301 ggtcacctat cagagtcagc atcccaatat caagaagcta ctgacatcct ggagctaggg
      361 ttgttaagaa gattacatga gctaatggat gtgaaaacat cttaaaaact ctcaaatact
      421 tttcaacttt ggaggattat tattttcatt tgttcagcga ctatcctcag actttaagtc
      481 aaatcttgtg acattctttg aagtgaagca ttctatgaat atgagctgaa gaaatgaatg
      541 aaatgaaata atgcaggtca ttttacctgg gacaaatacc taaaagaaac atgttcagtc
      601 ccagcgcctg tccattgctt caagcagtcc tacacacctc caagcaacga gttcaagatc
      661 agtatgaaat tggaagcaca ggatcccagg aacaccacat ctacctgtat tgccacagta
      721 gttggactga caggcgctcg cctccgcctt cgccttgatg gcagcgacaa caagaatgac
      781 ttctggcgtc tggttgactc agctgaaatc cagcctatcg ggaattgtga gaagaatggg
      841 ggtatgctgc agcctccgct gggatttcgg ctgaatgctt cctcttggcc catgttcctt
      901 ttgaagacgc taaatggagc agagatggct cccatcagga ttttccacaa ggaaccacca
      961 tcaccttctc acaacttctt caaaatggga atgaagctgg aagctgtgga caggaagaac
     1021 cctcatttca tttgcccagc cactattggg gaggtgcgag gctcagaggt gcttgtcact
     1081 tttgatgggt ggcgaggggc ctttgactac tggtgccgct tcgactcccg ggacatcttc
     1141 cctgtgggct ggtgttcctt gactggagac aacctgcagc cgcctggcac taaagttgtg
     1201 attccaaaga atccctatcc tgcatccgag gcgaacactg agaagcccag catccacagc
     1261 aacaccaaaa ctgccttgga gcctcaacca gggcagaggg ggcgtaaacc aggaaagaag
     1321 cggggccgga cacccaagcc cctaattccc catcccatct ctaccccatc caagtcagct
     1381 gaacctttga aattcccaaa gaagaggggt cccaaacctg gcagtaagag gaaacctcgg
     1441 actttgctga acccaccacc cacctcacca acaaccagca cccctgaacc ggataccagc
     1501 actgtacccc aagatgctgc caccatcccc agctcagcca tgcaggcccc cacagtttgt
     1561 atttacttga acaagaatgg cagcacaggc ccccacttag ataagaagaa ggtccagcag
     1621 ctccctgacc attttgggcc agcccaagcc tccgtggtgt tgcagcaggc tgtgcaggct
     1681 tgcatcgact gtgcttatca ccagaaaacc gtcttcggct tcctcaaaca gggtcacggt
     1741 ggtgcagtta tctcagccgt gtttgaccgt gagcagcaca ccctcaacct cccagccgtc
     1801 aacagcatca cctacgtcct ccgcttcctg gagaaactct gccacaacct tcgcagtgac
     1861 aatctgtttg gcaaccagcc ctttacacag actcacttgt cactcaccac cacagagtac
     1921 agccacagcc acgacaggta cctaccaggt gagacctttg ccctgggaaa tagtctgggc
     1981 cggtccttgg agccacactc agactcaatg gactccacct tgaatcccac caaccttgtc
     2041 agcacctccc aaaatcttcg aaaccctggg taccggcctt tgcttccatc ctgtggcctc
     2101 ccattgggca ctgcctcggc tgtgcgcagg ttctgctcca gggggtcgga tcgccgggat
     2161 gcctctcgac agagtggccg ggacccctcc tcgtggacag tcgaggacgt gatgcagttt
     2221 gtccgggaag ctgatcctca gcttggaccc catgctgacc tctttcgcaa acacgagatc
     2281 gacggcaagg ccctgcttct gctgcgtagc gacacgatga tgaagtacat gggtctgaag
     2341 ctggggcctg cgctcaagct ctcctaccac atcgaccggc tgaagcaggg caagttctga
     2401 acagggagac gcagcctaga cgaccgaggg accgagcaga ggggccatcc ttctcccagg
     2461 aaggagggcc atcggccccc tcccaggcac ctcagtgggg tccgaggctg cctcaggact
     2521 ccaggaggcc gtgtggagct gcaagcactg cccctcctgc catggtatgt ccttccatga
     2581 agggccgaga cgggcacggg gcccagggtt gccgctgctc ttcccctcag ccctgcctcg
     2641 gctctgaggt ctcctgtatt tattgctcag gcctggccgg cctctcccca ggaatttaga
     2701 ctgaacgcct tccaagtgat ggaggaaggg gctgacccct gaggcctcgg aagacggggc
     2761 cccgaagtga cactcgtgcc cggtcccctc accacccgct gggcctggtg tggctcccca
     2821 ttaccccatg gctcctgcct tcttctcacg agatccgcgg actccaaact catggtgcag
     2881 acctctacct tttttaagaa aagatctttt cttattaatt tattgtttct ggcacttggg
     2941 caagccctcc agttcatacc cctctcgctt cagacactgg gtttcaggag gagggagact
     3001 gcccggcccc ggccccagac aggccctctc cagagcggtg tggccccttt tcagaggaca
     3061 ttacctaggg tccctgtccc tctgcctctc ttcctccact gggccctctg cggcctcggc
     3121 ctcatctgtg ggaatgggag accctgccct gcactgtccc caccgcagct cccttgccct
     3181 ggccagaatc tctgctgaag aaggtcgggc ccaatgattt taagccaata cggccctaaa
     3241 atggatggga gaaaggggtc tctaggctgg agtctggttg gacccactcc actgtccaca
     3301 tgcttccttt gtaagcaagt cagcagcaca gctgcccccg ctgccatctg gacttatttt
     3361 atgtcaattt gtttataaat aaaaaacaat acagatgcca
//
LOCUS       XM_032651236            2861 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Scm polycomb group protein homolog 1
            (SCMH1), transcript variant X8, mRNA.
ACCESSION   XM_032651236
VERSION     XM_032651236.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2861
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2861
                     /gene="SCMH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763444"
     CDS             125..1861
                     /gene="SCMH1"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X5"
                     /protein_id="XP_032507127.1"
                     /db_xref="GeneID:116763444"
                     /translation="MKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLV
                     DSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPS
                     HNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFP
                     VGWCSLTGDNLQPPGTKVVIPKNPYPASEANTEKPSIHSNTKTALEPQPGQRGRKPGK
                     KRGRTPKPLIPHPISTPSKSAEPLKFPKKRGPKPGSKRKPRTLLNPPPTSPTTSTPEP
                     DTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPAQASVVLQ
                     QAVQACIDCAYHQKTVFGFLKQGHGGAVISAVFDREQHTLNLPAVNSITYVLRFLEKL
                     CHNLRSDNLFGNQPFTQTHLSLTTTEYSHSHDRYLPGETFALGNSLGRSLEPHSDSMD
                     STLNPTNLVSTSQNLRNPGYRPLLPSCGLPLGTASAVRRFCSRGSDRRDASRQSGRDP
                     SSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDTMMKYMGLKLGPALKL
                     SYHIDRLKQGKF"
     misc_feature    <125..412
                     /gene="SCMH1"
                     /note="malignant brain tumor (MBT) repeat; Region: MBT;
                     cl45897"
                     /db_xref="CDD:459242"
     misc_feature    order(143..145,152..154,161..163,167..169,215..217,
                     224..226,236..238)
                     /gene="SCMH1"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:439080"
     misc_feature    425..649
                     /gene="SCMH1"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Polycomb protein sex comb on midleg homolog 1 (SCMH1) and
                     similar proteins; Region: MBT_SCMH1_rpt2; cd20108"
                     /db_xref="CDD:439098"
     misc_feature    order(470..472,479..481,485..490,494..496,542..544,
                     551..553,563..565,641..649)
                     /gene="SCMH1"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:439098"
     misc_feature    752..913
                     /gene="SCMH1"
                     /note="RNA binding Region; Region: RBR; pfam17208"
                     /db_xref="CDD:465382"
     misc_feature    1013..1339
                     /gene="SCMH1"
                     /note="SLED domain; Region: SLED; pfam12140"
                     /db_xref="CDD:463469"
     misc_feature    1637..1849
                     /gene="SCMH1"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     Region: SAM_Scm; cd09578"
                     /db_xref="CDD:188977"
     misc_feature    order(1694..1696,1799..1810,1814..1819,1826..1828,
                     1835..1837)
                     /gene="SCMH1"
                     /note="oligomer interface EH [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
     misc_feature    order(1730..1744,1748..1753,1760..1765,1772..1777,
                     1781..1792)
                     /gene="SCMH1"
                     /note="oligomer interface ML [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188977"
ORIGIN      
        1 gactggaatg atgttagaaa acataaatat ggtcacctat cagagtcagc atcccaatat
       61 caagaagcta ctgacatcct ggagctagtc ctacacacct ccaagcaacg agttcaagat
      121 cagtatgaaa ttggaagcac aggatcccag gaacaccaca tctacctgta ttgccacagt
      181 agttggactg acaggcgctc gcctccgcct tcgccttgat ggcagcgaca acaagaatga
      241 cttctggcgt ctggttgact cagctgaaat ccagcctatc gggaattgtg agaagaatgg
      301 gggtatgctg cagcctccgc tgggatttcg gctgaatgct tcctcttggc ccatgttcct
      361 tttgaagacg ctaaatggag cagagatggc tcccatcagg attttccaca aggaaccacc
      421 atcaccttct cacaacttct tcaaaatggg aatgaagctg gaagctgtgg acaggaagaa
      481 ccctcatttc atttgcccag ccactattgg ggaggtgcga ggctcagagg tgcttgtcac
      541 ttttgatggg tggcgagggg cctttgacta ctggtgccgc ttcgactccc gggacatctt
      601 ccctgtgggc tggtgttcct tgactggaga caacctgcag ccgcctggca ctaaagttgt
      661 gattccaaag aatccctatc ctgcatccga ggcgaacact gagaagccca gcatccacag
      721 caacaccaaa actgccttgg agcctcaacc agggcagagg gggcgtaaac caggaaagaa
      781 gcggggccgg acacccaagc ccctaattcc ccatcccatc tctaccccat ccaagtcagc
      841 tgaacctttg aaattcccaa agaagagggg tcccaaacct ggcagtaaga ggaaacctcg
      901 gactttgctg aacccaccac ccacctcacc aacaaccagc acccctgaac cggataccag
      961 cactgtaccc caagatgctg ccaccatccc cagctcagcc atgcaggccc ccacagtttg
     1021 tatttacttg aacaagaatg gcagcacagg cccccactta gataagaaga aggtccagca
     1081 gctccctgac cattttgggc cagcccaagc ctccgtggtg ttgcagcagg ctgtgcaggc
     1141 ttgcatcgac tgtgcttatc accagaaaac cgtcttcggc ttcctcaaac agggtcacgg
     1201 tggtgcagtt atctcagccg tgtttgaccg tgagcagcac accctcaacc tcccagccgt
     1261 caacagcatc acctacgtcc tccgcttcct ggagaaactc tgccacaacc ttcgcagtga
     1321 caatctgttt ggcaaccagc cctttacaca gactcacttg tcactcacca ccacagagta
     1381 cagccacagc cacgacaggt acctaccagg tgagaccttt gccctgggaa atagtctggg
     1441 ccggtccttg gagccacact cagactcaat ggactccacc ttgaatccca ccaaccttgt
     1501 cagcacctcc caaaatcttc gaaaccctgg gtaccggcct ttgcttccat cctgtggcct
     1561 cccattgggc actgcctcgg ctgtgcgcag gttctgctcc agggggtcgg atcgccggga
     1621 tgcctctcga cagagtggcc gggacccctc ctcgtggaca gtcgaggacg tgatgcagtt
     1681 tgtccgggaa gctgatcctc agcttggacc ccatgctgac ctctttcgca aacacgagat
     1741 cgacggcaag gccctgcttc tgctgcgtag cgacacgatg atgaagtaca tgggtctgaa
     1801 gctggggcct gcgctcaagc tctcctacca catcgaccgg ctgaagcagg gcaagttctg
     1861 aacagggaga cgcagcctag acgaccgagg gaccgagcag aggggccatc cttctcccag
     1921 gaaggagggc catcggcccc ctcccaggca cctcagtggg gtccgaggct gcctcaggac
     1981 tccaggaggc cgtgtggagc tgcaagcact gcccctcctg ccatggtatg tccttccatg
     2041 aagggccgag acgggcacgg ggcccagggt tgccgctgct cttcccctca gccctgcctc
     2101 ggctctgagg tctcctgtat ttattgctca ggcctggccg gcctctcccc aggaatttag
     2161 actgaacgcc ttccaagtga tggaggaagg ggctgacccc tgaggcctcg gaagacgggg
     2221 ccccgaagtg acactcgtgc ccggtcccct caccacccgc tgggcctggt gtggctcccc
     2281 attaccccat ggctcctgcc ttcttctcac gagatccgcg gactccaaac tcatggtgca
     2341 gacctctacc ttttttaaga aaagatcttt tcttattaat ttattgtttc tggcacttgg
     2401 gcaagccctc cagttcatac ccctctcgct tcagacactg ggtttcagga ggagggagac
     2461 tgcccggccc cggccccaga caggccctct ccagagcggt gtggcccctt ttcagaggac
     2521 attacctagg gtccctgtcc ctctgcctct cttcctccac tgggccctct gcggcctcgg
     2581 cctcatctgt gggaatggga gaccctgccc tgcactgtcc ccaccgcagc tcccttgccc
     2641 tggccagaat ctctgctgaa gaaggtcggg cccaatgatt ttaagccaat acggccctaa
     2701 aatggatggg agaaaggggt ctctaggctg gagtctggtt ggacccactc cactgtccac
     2761 atgcttcctt tgtaagcaag tcagcagcac agctgccccc gctgccatct ggacttattt
     2821 tatgtcaatt tgtttataaa taaaaaacaa tacagatgcc a
//
LOCUS       XM_032651250            3344 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus saccharopine dehydrogenase (putative)
            (SCCPDH), transcript variant X1, mRNA.
ACCESSION   XM_032651250
VERSION     XM_032651250.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3344
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3344
                     /gene="SCCPDH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763476"
     CDS             135..1427
                     /gene="SCCPDH"
                     /codon_start=1
                     /product="saccharopine dehydrogenase-like oxidoreductase
                     isoform X1"
                     /protein_id="XP_032507141.1"
                     /db_xref="GeneID:116763476"
                     /translation="MATQQRPFHLVVFGASGFTGQFVTEEVAREQMSPERSSRLPWAV
                     AGRSREKLQRVLERAAMKLGRPTLSSEVGIIICDITNPASLDEMAKQATVVLNCVGPY
                     RFYGEPVVKACVENGTSCIDICGEPQFLELMYWKYHEKAAEKGAYIIGSSGFDSIPAD
                     LGVIYTRNKMNGTLTAVESFLTIHSGPEGLCTHDGTWKSAVYGFGDQSNLKKLRNESN
                     LKPVPIVGPKLKRRWPISYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAA
                     YVTVGGVTSVIKLMFAGLFFLFFVKFGIGRQLLIKFPWLFSFGYFSKQGPTQKQIDAS
                     SFTLTFFGQGYSQGFGPDKNKPNIRICTQVKGPEAGYVATPIAMVQAAITLLTDASDL
                     PKAAGRIGSQLCTNLWDLRRGFIISKIRKMDKSKRSHD"
     misc_feature    135..1325
                     /gene="SCCPDH"
                     /note="Uncharacterized conserved protein, related to
                     short-chain dehydrogenases [Function unknown]; Region:
                     COG3268"
                     /db_xref="CDD:442499"
ORIGIN      
        1 cgcggcgctc aggcgtcgga gactgcagca gccggggagg agacggttgc tgggccgggt
       61 cgtggggtcg ctgcttgagg cgcaggcgcc gtggactcag cccatccttg tccttgcatc
      121 gccgtgggct cgtaatggcg acccagcaga ggcctttcca cctggtggtg ttcggcgcct
      181 ctggctttac cggccagttc gtgaccgagg aggtggcccg ggagcagatg tccccggagc
      241 ggagctcccg cctgccatgg gctgtggcgg gccgttctcg ggagaagctg cagcgagtcc
      301 tggagagggc tgccatgaaa ctgggaaggc cgacactgtc atctgaagtt ggaataataa
      361 tttgtgatat cactaatcca gcctcacttg atgaaatggc taaacaggca acagttgtcc
      421 tcaactgtgt aggaccatac cgattttatg gagaacctgt agtgaaagca tgtgttgaaa
      481 atggaactag ctgtattgac atctgtggag aacctcagtt tctggaacta atgtattgga
      541 agtatcatga gaaagctgca gaaaaagggg cttatatcat tggaagcagt ggctttgact
      601 ccattccagc agatctggga gtaatatata ccagaaataa aatgaatggt acattgactg
      661 ctgtggaaag tttcctgact atacattcag gacctgaggg gttgtgcact catgatggta
      721 cctggaagtc agcggtttat ggttttggag atcagagtaa tttgaaaaaa ctacgaaatg
      781 agtccaattt gaagcctgtc ccaattgttg gtccaaaatt gaaaagaagg tggccaattt
      841 cttactgcag agaactcaac agttattcca ttcctttctt gggagcagat gtgtctgttg
      901 tgaagcggac tcagcgttac ttgcacgaaa atttagagca atcacctgtt cagtatgctg
      961 cttatgtaac tgtgggaggt gtcacctctg ttattaagct gatgtttgct ggacttttct
     1021 ttttattctt tgtgaagttt ggcattggaa ggcaactcct cataaaattc ccatggctct
     1081 tctcctttgg ttatttctca aaacaaggtc caacacaaaa acagattgat gcctcatcgt
     1141 ttacgttgac attttttggt caagggtaca gccaaggctt tggtcctgat aagaacaaac
     1201 caaatatcag aatttgtact caggtgaaag gaccagaagc tggctatgtg gctaccccca
     1261 tagccatggt ccaggcagcc ataactctac taactgacgc ctctgatctt cctaaggcgg
     1321 ctggtcgaat cgggtctcag ctgtgcacta atttgtggga ccttagaaga ggttttatca
     1381 tctctaaaat caggaagatg gacaagagca agagatctca tgactagctg catatccgaa
     1441 ccacaaacaa tgtaggttcc ccagcggacc ccagcaattt gcattcggga ggtgtgacgg
     1501 ttgggcccta ggaatctgtg gcttagatct gcactgggga gctactgggt gagactccat
     1561 gtgcatcttt ccacttttgc aacgagtgct gtgttgtgct ctagtgttga tgctgatatg
     1621 tgaccacctg tgtgaccctg tcctccagct tgaggtataa gtgtctcgtc ctgatattct
     1681 ttctaaccct ccaaggctcc acctgctcac ttgcagaaag tatatttact tgcctcaagc
     1741 aaattgtcca agaactttaa gtctcagtcc aagaggtaga agtcgttcct gcttcccatg
     1801 gcctcactgc tatcctgcct caaggacaaa ggctttcctg ggttctgtga tgctttgctg
     1861 acccttgtcc ctgccatcac caacatggag ctccacactt gggctccaag gttacaggtt
     1921 atattttagt tcatgtgcat acactcagcc aggacctgag ctacaggcaa aacccaagcc
     1981 cctcccataa gcccttgggt cctggtagta agctgaagtc accagcccag atgcctctgc
     2041 cttcccaagg agactcctct tggagccctt gatagccttt cctgccagta gagtttcagt
     2101 gcccctaact ttatatttta gggagcaagt attggagttg tcacctctgt tgcctccttc
     2161 ctgttcttat gcaaatcagt caaactgctc cttgggacag tcctgcatat taaggcccca
     2221 ggcctttggt taggaatgca gtcccagagt cagcccactg cttacagtgg cctggacaag
     2281 cctcgtttgt ttaaccttta aagcctcaaa atggggaaag taatagggcc acattcatag
     2341 aattatggtg aaaattaaat gagctcacag atgtttagca cttagattag tgcctggcac
     2401 acagtaagcc ctggataagt ctctgttatt gctgctattg ttagtctgtc taaggccgca
     2461 aaagttttct ttacaagcct ttccccagag cactcagtgc ccgtgggtcc ttaactaaga
     2521 ctcatcaatc agttctttgt ggaatcaaga tctctttgag attgactaat tcctggcaga
     2581 tgtcatagta aatcttaatc tctgccaccc caggcccttg cactgaacgg gtcccacagt
     2641 acaggcactt aacgatgctt aatgaattga acctatttca aataaaccta tgaagacaga
     2701 aaataagtgg aggtagaata tcaaatttgt tcagaacaag gatacaaaat gaggggcatg
     2761 aaataaccat tctctaggtg agacagcaag aaacttatca aaagctttta tttgaagttt
     2821 ggagctgtcg atcatgaaaa tattaacggc agttgcttac caattcctct gtgtgccaag
     2881 cacattctaa gttctttata ttcttttata tttgttaacc atctgcagta agtactgtta
     2941 ccgttcccct gtaacaggta aggaaagaga cttagagagg ggaagtcatt tgccccaaac
     3001 cacacaattg attagtgatg gattcagccc caggcagtca atcccagagc tcagagtgct
     3061 gaccattcac cttatgaatt tcccacctca ccttcaccct ggttatggat tcatttttac
     3121 atggttttaa atcaaattga agaagagttt tgcttaaaag tggtataata ggttgagtga
     3181 gtgggaaatg ggttgactag gttgagtcca caattcagtt ctgagagcca agttaaataa
     3241 gcttattagc tgcacaaata atctttccaa ctcaaagctc aaatgttttc agttggtgta
     3301 tcctcactat tccatatgca ataaacattc tctcttcttt ttca
//
LOCUS       XM_032651260            1891 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus saccharopine dehydrogenase (putative)
            (SCCPDH), transcript variant X2, mRNA.
ACCESSION   XM_032651260
VERSION     XM_032651260.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1891
                     /gene="SCCPDH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116763476"
     CDS             135..1427
                     /gene="SCCPDH"
                     /codon_start=1
                     /product="saccharopine dehydrogenase-like oxidoreductase
                     isoform X1"
                     /protein_id="XP_032507151.1"
                     /db_xref="GeneID:116763476"
                     /translation="MATQQRPFHLVVFGASGFTGQFVTEEVAREQMSPERSSRLPWAV
                     AGRSREKLQRVLERAAMKLGRPTLSSEVGIIICDITNPASLDEMAKQATVVLNCVGPY
                     RFYGEPVVKACVENGTSCIDICGEPQFLELMYWKYHEKAAEKGAYIIGSSGFDSIPAD
                     LGVIYTRNKMNGTLTAVESFLTIHSGPEGLCTHDGTWKSAVYGFGDQSNLKKLRNESN
                     LKPVPIVGPKLKRRWPISYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAA
                     YVTVGGVTSVIKLMFAGLFFLFFVKFGIGRQLLIKFPWLFSFGYFSKQGPTQKQIDAS
                     SFTLTFFGQGYSQGFGPDKNKPNIRICTQVKGPEAGYVATPIAMVQAAITLLTDASDL
                     PKAAGRIGSQLCTNLWDLRRGFIISKIRKMDKSKRSHD"
     misc_feature    135..1325
                     /gene="SCCPDH"
                     /note="Uncharacterized conserved protein, related to
                     short-chain dehydrogenases [Function unknown]; Region:
                     COG3268"
                     /db_xref="CDD:442499"
ORIGIN      
        1 cgcggcgctc aggcgtcgga gactgcagca gccggggagg agacggttgc tgggccgggt
       61 cgtggggtcg ctgcttgagg cgcaggcgcc gtggactcag cccatccttg tccttgcatc
      121 gccgtgggct cgtaatggcg acccagcaga ggcctttcca cctggtggtg ttcggcgcct
      181 ctggctttac cggccagttc gtgaccgagg aggtggcccg ggagcagatg tccccggagc
      241 ggagctcccg cctgccatgg gctgtggcgg gccgttctcg ggagaagctg cagcgagtcc
      301 tggagagggc tgccatgaaa ctgggaaggc cgacactgtc atctgaagtt ggaataataa
      361 tttgtgatat cactaatcca gcctcacttg atgaaatggc taaacaggca acagttgtcc
      421 tcaactgtgt aggaccatac cgattttatg gagaacctgt agtgaaagca tgtgttgaaa
      481 atggaactag ctgtattgac atctgtggag aacctcagtt tctggaacta atgtattgga
      541 agtatcatga gaaagctgca gaaaaagggg cttatatcat tggaagcagt ggctttgact
      601 ccattccagc agatctggga gtaatatata ccagaaataa aatgaatggt acattgactg
      661 ctgtggaaag tttcctgact atacattcag gacctgaggg gttgtgcact catgatggta
      721 cctggaagtc agcggtttat ggttttggag atcagagtaa tttgaaaaaa ctacgaaatg
      781 agtccaattt gaagcctgtc ccaattgttg gtccaaaatt gaaaagaagg tggccaattt
      841 cttactgcag agaactcaac agttattcca ttcctttctt gggagcagat gtgtctgttg
      901 tgaagcggac tcagcgttac ttgcacgaaa atttagagca atcacctgtt cagtatgctg
      961 cttatgtaac tgtgggaggt gtcacctctg ttattaagct gatgtttgct ggacttttct
     1021 ttttattctt tgtgaagttt ggcattggaa ggcaactcct cataaaattc ccatggctct
     1081 tctcctttgg ttatttctca aaacaaggtc caacacaaaa acagattgat gcctcatcgt
     1141 ttacgttgac attttttggt caagggtaca gccaaggctt tggtcctgat aagaacaaac
     1201 caaatatcag aatttgtact caggtgaaag gaccagaagc tggctatgtg gctaccccca
     1261 tagccatggt ccaggcagcc ataactctac taactgacgc ctctgatctt cctaaggcgg
     1321 ctggtcgaat cgggtctcag ctgtgcacta atttgtggga ccttagaaga ggttttatca
     1381 tctctaaaat caggaagatg gacaagagca agagatctca tgactagctg catatccgaa
     1441 ccacaaacaa tgctttctaa aagaagatgg tccacctctt gctccttgga attcccatca
     1501 agagaaaagc caaagcacca gaatttctca acagtattct ggaactaaca cgtgtaggcc
     1561 tcaccaaagt gactgaatct catgcaagtt tcccgatgat tgggatcctg tgtcaccaga
     1621 cagcgaatgc cagcccaggc ctcctctgtg gcagagaagc caccagcatg cctgcaccca
     1681 gagagggtct ctggaggaca gtctggggtg gggtggccat ggcaagctaa tgttggtctg
     1741 gggtcctggt ggtcccagag ccgtgggggc cagaggtgga aggaacggac tcgaggctgg
     1801 gactggggag gcccgggtgt tggctgaggc cctgtcacta gttcactatg gggttttggg
     1861 caaagcaccc gccctctcca ggcccacgtg t
//
LOCUS       XM_032651269            1948 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus saccharopine dehydrogenase (putative)
            (SCCPDH), transcript variant X3, mRNA.
ACCESSION   XM_032651269
VERSION     XM_032651269.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1948
                     /gene="SCCPDH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 6 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763476"
     CDS             133..1422
                     /gene="SCCPDH"
                     /codon_start=1
                     /product="saccharopine dehydrogenase-like oxidoreductase
                     isoform X2"
                     /protein_id="XP_032507160.1"
                     /db_xref="GeneID:116763476"
                     /translation="MATQQRPFHLVVFGASGFTGQFVTEEVAREQMSPERSSRLPWAV
                     AGRSREKLQRVLERAAMKLGRPTLSSEVGIIICDITNPASLDEMAKQATVVLNCVGPY
                     RFYGEPVVKACVENGTSCIDICGEPQFLELMYWKYHEKAAEKGAYIIGSSGFDSIPAD
                     LGVIYTRNKMNGTLTAVESFLTIHSGPEGLCTHDGTWKSAVYGFGDQSNLKKLRNESN
                     LKPVPIVGPKLKRRWPISYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAA
                     YVTVGGVTSVIKLMFAGLFFLFFVKFGIGRQLLIKFPWLFSFGYFSKQGPTQKQIDAS
                     SFTLTFFGQGYSQGFGPDKNKPNIRICTQVKGPEAGYVATPIAMVQAAITLLTDASDL
                     PKAGGVFTPGAAFSRTKLIDRLNQHGIEFSVISSSEV"
     misc_feature    133..1407
                     /gene="SCCPDH"
                     /note="Uncharacterized conserved protein, related to
                     short-chain dehydrogenases [Function unknown]; Region:
                     COG3268"
                     /db_xref="CDD:442499"
ORIGIN      
        1 cggcgctcag gcgtcggaga ctgcagcagc cggggaggag acggttgctg ggccgggtcg
       61 tggggtcgct gcttgaggcg caggcgccgt ggactcagcc catccttgtc cttgcatcgc
      121 cgtgggctcg taatggcgac ccagcagagg cctttccacc tggtggtgtt cggcgcctct
      181 ggctttaccg gccagttcgt gaccgaggag gtggcccggg agcagatgtc cccggagcgg
      241 agctcccgcc tgccatgggc tgtggcgggc cgttctcggg agaagctgca gcgagtcctg
      301 gagagggctg ccatgaaact gggaaggccg acactgtcat ctgaagttgg aataataatt
      361 tgtgatatca ctaatccagc ctcacttgat gaaatggcta aacaggcaac agttgtcctc
      421 aactgtgtag gaccataccg attttatgga gaacctgtag tgaaagcatg tgttgaaaat
      481 ggaactagct gtattgacat ctgtggagaa cctcagtttc tggaactaat gtattggaag
      541 tatcatgaga aagctgcaga aaaaggggct tatatcattg gaagcagtgg ctttgactcc
      601 attccagcag atctgggagt aatatatacc agaaataaaa tgaatggtac attgactgct
      661 gtggaaagtt tcctgactat acattcagga cctgaggggt tgtgcactca tgatggtacc
      721 tggaagtcag cggtttatgg ttttggagat cagagtaatt tgaaaaaact acgaaatgag
      781 tccaatttga agcctgtccc aattgttggt ccaaaattga aaagaaggtg gccaatttct
      841 tactgcagag aactcaacag ttattccatt cctttcttgg gagcagatgt gtctgttgtg
      901 aagcggactc agcgttactt gcacgaaaat ttagagcaat cacctgttca gtatgctgct
      961 tatgtaactg tgggaggtgt cacctctgtt attaagctga tgtttgctgg acttttcttt
     1021 ttattctttg tgaagtttgg cattggaagg caactcctca taaaattccc atggctcttc
     1081 tcctttggtt atttctcaaa acaaggtcca acacaaaaac agattgatgc ctcatcgttt
     1141 acgttgacat tttttggtca agggtacagc caaggctttg gtcctgataa gaacaaacca
     1201 aatatcagaa tttgtactca ggtgaaagga ccagaagctg gctatgtggc tacccccata
     1261 gccatggtcc aggcagccat aactctacta actgacgcct ctgatcttcc taaggcgggt
     1321 ggggtcttca ctcctggagc agctttctcc agaacaaagt tgattgacag actcaaccaa
     1381 catggcattg aatttagtgt cattagcagc tctgaagtct aaacatttga ataattaacc
     1441 gaagtcataa aatgcatgaa ttaacagctt tttaatttgc tatttgaaat tcttctataa
     1501 gcctgtctga ctatatgtgg aaaagattgt caaatctaaa atatgtatat agtaaaagca
     1561 gggaattgta ctagcttacc ataaatttca aatcttagct gatttttgtg attttattgc
     1621 ttgtgagaaa aaattaatat ttgacttttt catggaggaa ttcaaggtca gttttttaag
     1681 tgagctggaa gatcagaggg tgggatgggt ggctctctct gtggctgaca cgcccaggct
     1741 ggtggtcatg taagacggca gctgctcttt tccttgccat gatattgaat gtgatctcac
     1801 ttccccatga atttctctgc atagtgtagg cctttgccaa atgaaactgc agtttttgct
     1861 atattagcct actttttcac ccatccacac tgactgattt tggactctta cctaagttta
     1921 ataataaagg attgtcaatt gaacagtg
//
LOCUS       XR_004352538            1937 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus saccharopine dehydrogenase (putative)
            (SCCPDH), transcript variant X4, misc_RNA.
ACCESSION   XR_004352538
VERSION     XR_004352538.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1937
                     /gene="SCCPDH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116763476"
     misc_RNA        1..1937
                     /gene="SCCPDH"
                     /product="saccharopine dehydrogenase (putative),
                     transcript variant X4"
                     /db_xref="GeneID:116763476"
ORIGIN      
        1 cgcggcgctc aggcgtcgga gactgcagca gccggggagg agacggttgc tgggccgggt
       61 cgtggggtcg ctgcttgagg cgcaggcgcc gtggactcag cccatccttg tccttgcatc
      121 gccgtgggct cgtaatggcg acccagcaga ggcctttcca cctggtggtg ttcggcgcct
      181 ctggctttac cggccagttc gtgaccgagg aggtggcccg ggagcagatg tccccggagc
      241 ggagctcccg cctgccatgg gctgtggcgg gccgttctcg ggagaagctg cagcgagtcc
      301 tggagagggc tgccatgaaa ctgggaaggc cgacactgtc atctgaagtt ggaataataa
      361 tttgtgatat cactaatcca gcctcacttg atgaaatggc taaacaggca acagttgtcc
      421 tcaactgtgt aggaccatac cgattttatg gagaacctgt agtgaaagca tgtgttgaaa
      481 atggaactag ctgtattgac atctgtggag aacctcagtt tctggaacta atgtattgga
      541 agtatcatga gaaagctgca gaaaaagggg cttatatcat tggaagcagt ggctttgact
      601 ccattccagc agatctggga gtaatatata ccagaaataa aatgaatggt acattgactg
      661 ctgtggaaag tttcctgact atacattcag gacctgaggg gttgtgcact catgatggta
      721 cctggaagtc agcggtttat ggttttggag atcagagtaa tttgaaaaaa ctacgaaatg
      781 agtccaattt gaagcctgtc ccaattgttg gtccaaaatt gaaaagaagg tggccaattt
      841 cttactgcag agaactcaac agttattcca ttcctttctt gggagcagat gtgtctgttg
      901 tgaagcggac tcagcgttac ttgcacgaaa atttagagca atcacctgtt cagtatgctg
      961 cttatgtaac tgtgggaggt gtcacctctg ttattaagct gatgtttgct ggacttttct
     1021 ttttattctt tgtgaagttt ggcattggaa ggcaactcct cataaaattc ccatggctct
     1081 tctcctttgg ttatttctca aaacaaggtc caacacaaaa acagattgat gcctcatcgt
     1141 ttacgttgac attttttggt caagggtaca gccaaggctt tggtcctgat aagaacaaac
     1201 caaatatcag aatttgtact cagaagctgg ctatgtggct acccccatag ccatggtcca
     1261 ggcagccata actctactaa ctgacgcctc tgatcttcct aaggcgggtg gggtcttcac
     1321 tcctggagca gctttctcca gaacaaagtt gattgacaga ctcaaccaac atggcattga
     1381 atttagtgtc attagcagct ctgaagtcta aacatttgaa taattaaccg aagtcataaa
     1441 atgcatgaat taacagcttt ttaatttgct atttgaaatt cttctataag cctgtctgac
     1501 tatatgtgga aaagattgtc aaatctaaaa tatgtatata gtaaaagcag ggaattgtac
     1561 tagcttacca taaatttcaa atcttagctg atttttgtga ttttattgct tgtgagaaaa
     1621 aattaatatt tgactttttc atggaggaat tcaaggtcag ttttttaagt gagctggaag
     1681 atcagagggt gggatgggtg gctctctctg tggctgacac gcccaggctg gtggtcatgt
     1741 aagacggcag ctgctctttt ccttgccatg atattgaatg tgatctcact tccccatgaa
     1801 tttctctgca tagtgtaggc ctttgccaaa tgaaactgca gtttttgcta tattagccta
     1861 ctttttcacc catccacact gactgatttt ggactcttac ctaagtttaa taataaagga
     1921 ttgtcaattg aacagtg
//
LOCUS       XR_004352539            1428 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus saccharopine dehydrogenase (putative)
            (SCCPDH), transcript variant X5, misc_RNA.
ACCESSION   XR_004352539
VERSION     XR_004352539.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1428
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1428
                     /gene="SCCPDH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116763476"
     misc_RNA        1..1428
                     /gene="SCCPDH"
                     /product="saccharopine dehydrogenase (putative),
                     transcript variant X5"
                     /db_xref="GeneID:116763476"
ORIGIN      
        1 cgcggcgctc aggcgtcgga gactgcagca gccggggagg agacggttgc tgggccgggt
       61 cgtggggtcg ctgcttgagg cgcaggcgcc gtggactcag cccatccttg tccttgcatc
      121 gccgtgggct cgtaatggcg acccagcaga ggcctttcca cctggtggtg ttcggcgcct
      181 ctggctttac cggccagttc gtgaccgagg aggtggcccg ggagcagatg tccccggagc
      241 ggagctcccg cctgccatgg gctgtggcgg gccgttctcg ggagaagctg cagcgagtcc
      301 tggagagggc tgccatgaaa ctgggaaggc cgacactgtc atctgaagtt ggaataataa
      361 tttgtgatat cactaatcca gcctcacttg atgaaatggc taaacaggca acagttgtcc
      421 tcaactgtgt aggaccatac cgattttatg gagaacctgt agtgaaagca tgtgttgaaa
      481 atggaactag ctgtattgac atctgtggag aacctcagtt tctggaacta atgtattgga
      541 agtatcatga gaaagctgca gaaaaagggg cttatatcat tggaagcagt ggctttgact
      601 ccattccagc agatctggga gtaatatata ccagaaataa aatgaatggt acattgactg
      661 ctgtggaaag tttcctgact atacattcag gacctgaggg gttgtgcact catgatggta
      721 cctggaagtc agcggtttat ggttttggag atcagagtaa tttgaaaaaa ctacgaaatg
      781 agtccaattt gaagcctgtc ccaattgttg gtccaaaatt gaaaagaagg tggccaattt
      841 cttactgcag agaactcaac agttattcca ttcctttctt gggagcagat gtgtctgttg
      901 tgaagcggac tcagcgttac ttgcacgaaa atttagagca atcacctgtt cagtatgctg
      961 cttatgtaac tgtgggaggt gtcacctctg ttattaagct gatgtttgct ggacttttct
     1021 ttttattctt tgtgaagttt ggcattggaa ggcaactcct cataaaattc ccatggctct
     1081 tctcctttgg ttatttctca aaacaaggtc caacacaaaa acagattgat gcctcatcgt
     1141 ttacgttgac attttttggt caagggtaca gccaaggctt tggtcctgat aagaacaaac
     1201 caaatatcag aatttgtact cagaagctgg ctatgtggct acccccatag ccatggtcca
     1261 ggcagccata actctactaa ctgacgcctc tgatcttcct aaggcggctg gtcgaatcgg
     1321 gtctcagctg tgcactaatt tgtgggacct tagaagaggt tttatcatct ctaaaatcag
     1381 gaagatggac aagagcaaga gatctcatga ctagctgcat atccgaac
//
LOCUS       XM_032651291            4775 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X1, mRNA.
ACCESSION   XM_032651291
VERSION     XM_032651291.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4775
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4775
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763489"
     CDS             62..3595
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X1"
                     /protein_id="XP_032507182.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQVMKLNDDMLEPTPFQ
                     SPFHLHSLRELEEKRLHGHKSGYTNTNTLLSSLASRSSLVLLSSVSFSFYPSPTLETL
                     GYRNGKDSWGSIWSLGPQTVSLTFPEMGSQM"
     misc_feature    209..322
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1547..1630
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga gtattctacc ttgtaaatac tgttatttgt atatactgta
       61 aatgatgacg tcggtgggca ctaaccgagc ccggggaaac tgggaaccac ctcaaaacca
      121 aaatcagaca cagcacaagc agcggcccca ggccactgcg gaacaaattc gacttgcaca
      181 gatgatttcg gaccataatg atgctgactt tgaggaaaag gtgaaacaat tgattgatat
      241 cacaggcaag aaccaggatg aatgtgtcat tgctttgcat gactgcaacg gagatgtcaa
      301 cagagccatc aatgtactgc tggaaggaaa cccagatacg cattcctggg agatggttgg
      361 gaagaagaaa ggagtctcag gacagaagga cagtggccaa acggaatcca acgaggaagg
      421 caaagaaaat cgagaccggg acagagacta tagtcggcga cgtggtgggc caccaagacg
      481 ggggagaggt gccagccgcg gacgagagtt tcgaggtcag gaaaatggat tagatggcac
      541 caagagtgga gggccttctg gaagaggcac agaaagaggc agaagaggtc gtggccgagg
      601 cagaggtggc tctggtaggc ggggaggaag gttttctgct caaggaatgg gaacctttaa
      661 cccagctgat tatgcagagc cggccaatac tgatgataac tatggcaata atagcggcaa
      721 tacatggaac aacactggcc actttgaacc agatgatggg acgagtgcat ggaggactgc
      781 aacagaggag tggggaactg aagattggaa tgaagatctt tctgagacca agatcttcac
      841 tgcctctaat gtgtcgtcag tgcctctgcc tgcggagaat gtgacaatca ctgctggtca
      901 gagaattgac cttgctgttc tgttggggaa gacaccatct tcaatggaga atgattcatc
      961 taatctggat ccatctcagg ctccttctct tgcccagcct ctggtgttca gtaactcgaa
     1021 gcagagtgcc atatcacagc ctgcttcagg gaacacgttt tctcatcaca gtatggtgag
     1081 catgttaggg aaaggatttg gtgatgtcgg tgaagctaaa ggcagcagca ccacaggctc
     1141 ccagttcttg gagcaattca agactgctca ggccctggct cagttggcag ctcagcattc
     1201 tcaatctgga accaccacca cctcctcttg ggacatgggc tccaccacac aatccccatc
     1261 gctggtgcag tatgatttga agaacccaaa tgattcaaca gtgcacagcc cctttacaaa
     1321 gcgccaggct ttcacctcat cttcaaccat gatggaggtg ttccttcagg agaagccacc
     1381 tgcagtggct acctccactg ctgcacctcc acccccatct tctcctctgc caagcaaatc
     1441 cacctcggct ccacaaatgt ctcctgggtc ttcagacaac caatcgtcca gccctcagcc
     1501 ggctcagcaa aaactgaaac agcagaagaa aaaagcctcc ttgacttcta agattcctgc
     1561 tctggctgtg gagatgcctg gctcggcaga tatctcaggg ctaaatctgc agtttggggc
     1621 gttgcagttt gggtcagagc ctgtcctttc tgattatgag tccaccccca ccacgagcgc
     1681 ctcttcaagc caggctccaa gtagcctcta taccagcacg gccagtgaat cttcatccac
     1741 aatttcatct aaccagagtc aggagtctgg ttatcagagt ggcccaattc agtcgacaac
     1801 ctatacctcc caaaataatg ctcagggccc tctatatgaa cagagatcca cacagactcg
     1861 gcggtacccc agctccatct cttcatcacc ccaaaaggac ttgactcagg caaagaatgg
     1921 cttcagttct gtgcaggcca cgcagttaca gaccacgcaa tctgttgaag gtgctacagg
     1981 ctctgcagtg aaatctgact caccttccac ttctagcatc ccccctctca gtgaaacggt
     2041 atctgcagct tccttactga cgacaaccaa tcagcactca tcttccttgg gtggcttgag
     2101 ccacaatgag gagattccaa atagtaccac cacacaacac agcagcacgt tatctactca
     2161 gcagaatacc ctttcgtcat caacatcttc tgggcgcact tcgacatcca ctcttttgca
     2221 cacaagcgtg gagagtgagg cgaatcttca ttcttcctcc agcactttct ccaccacatc
     2281 cagcacagtc tctgcacctc ccccagtggt cagtgtctct tccagtctca atagtggcag
     2341 tagcttgggc ctcagcctag gcagcaactc taccgtcaca gcctccactc gaagctcagt
     2401 tgctacaact tcaggaaaag ctcctcccaa cctccctcct ggggtcccgc cgttgttgcc
     2461 taatccatat attatggctc cagggctgtt acatgcctac ccgccacaag tatatggtta
     2521 tgatgacttg cagatgcttc agacaagatt tccattggat tactacagca tcccatttcc
     2581 cacacccacc actccgctga ctgggaggga tggtagcctg gccagcaacc cttattctgg
     2641 tgacctcaca aagttcggcc gtggggatgc ctcctccccg gccccggcca caaccttggc
     2701 ccagccccag cagaaccaga cacagactca ccataccacg cagcagacat tcctgaaccc
     2761 ggcgctgcct cctggctaca gttacaccag cctgccatac tacacagggg ttccgggcct
     2821 ccccagcacc ttccagtatg ggcctgctgt gttccctgtg gctcctacct cttccaagca
     2881 gcatggtgtg aatgtcagtg tgaatgcatc agccacccct ttccaacagc caagtggata
     2941 tgggtctcat ggatacaaca ctggtgtatc agtcacctcc agtaacacag gcgtgccaga
     3001 tatctcgggt tctgtgtact ccaaaaccca gcagtccttt gagaaacaag gttttcattc
     3061 cggtactcct gctgcctcct tcaacttgcc ttcagcccta ggaagtgggg ggcccatcaa
     3121 tccggccaca gctgctgcct acccacctgc cccctttatg cacattctga ccccccatca
     3181 gcaaccgcac tcccagatac ttcaccatca cctgcagcag gatggccagc taccatattt
     3241 gcagatgatt ctctgttgcc agcgccagca ggaggagcag gtaatgaaac tgaatgatga
     3301 tatgcttgaa cccactcctt ttcagtcccc atttcacctc cacagtctca gggaacttga
     3361 agagaaaaga ttgcacggtc acaaatcggg atacacaaac acaaacacct tgctgagctc
     3421 tctggcctcc cgttcctctc ttgtcctcct ctcctcagtg tctttttctt tctacccttc
     3481 cccgactctt gaaacacttg gttaccggaa tggaaaggat tcttggggca gcatctggag
     3541 cctggggcct cagactgtct ctcttacctt tcctgaaatg ggctcgcaga tgtgatgtgt
     3601 ggtaggggtg gggagccctg gggtggtgca ggtgacctct cccccttcct cataggtggt
     3661 tgcggagcta gaataagggc tgccttgctc tcaaagacag atgtccaaat tgaggcattc
     3721 atggggatca gtgaaagtga aatcaccttg tgatcactca tctccaagag gctataattc
     3781 tctctagaga gtagcctttc ctcggatcag gggatggtgg gtttgggggg gtgaggagaa
     3841 ggtgaaattg aaaattagta gaactgatgc actatcttgt ctctcaaaat atcccaccct
     3901 cttttcatct ttcccttatt taaagtttta aagtgttttt ttacttgtca gaggtgctct
     3961 aactgctgta taaaacaaat ttcctatggt taagaagtaa gcttcagagt agtttctaag
     4021 caaggggaat gggagagtaa aacaatttcc agatttccac ctgaagatgt cataaatttg
     4081 tcccactaac tagacatctt tttcctcccc attcaccctc ccattcccct gcagacgggc
     4141 agcgggcaac gtagccagac cagctccatc ccgcagaagc cccagaccaa caagtctgcc
     4201 tacaacagct acagctgggg ggccaactga ggccctgact ctcttctccc ggtcccatct
     4261 tctgagaggg cttctcagcc tggcaactat ggaaacagca tcaaagagag aaaggaatgt
     4321 gggggggttc cactgccccc acccccagcg gcccatccca tgcctcagct tcatgtctgt
     4381 cccattccca taccatcccc actctgttgt atgtattata ggatttgtat tttctccttt
     4441 tttttttctt cctttcctct cctcctcccc ccttgcattc aagattatga aactttgctg
     4501 tgggccctgc cctccctttt cctcctcctg ttcaccctgg tggtgtgtgg gtgaggtagg
     4561 gaggggggac ccccaaatat atatcagccc aacagcccta agtctcctcc tttattatta
     4621 ggaaacaaaa caacaacaac aaaaaaatgg cgtcatgaat atgaacagca ttgtcagatg
     4681 aattagttga agtgtttttt ttttttttgt actgtgtcct caaatttaat ggattaatgt
     4741 gtcttgtata tataaaaaga aaacctctac cttca
//
LOCUS       XM_032651300            4079 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X2, mRNA.
ACCESSION   XM_032651300
VERSION     XM_032651300.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4079
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4079
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3534
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X2"
                     /protein_id="XP_032507191.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWG
                     TEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLD
                     PSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQ
                     FLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFT
                     KRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSS
                     PQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
                     PTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYE
                     QRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTS
                     SIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTS
                     SGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLG
                     SNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQM
                     LQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQ
                     QNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQH
                     GVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFH
                     SGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQL
                     PYLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1705..1788
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagacttgat ttcattgggg ttgaggggtc aaattatccc
      901 cgaaaatttg agactgctcc tggtgcatgg aggactgcaa cagaggagtg gggaactgaa
      961 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
     1021 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1081 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1141 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1201 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1261 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1321 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1381 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1441 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1501 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1561 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1621 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1681 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1741 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1801 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1861 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1921 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1981 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     2041 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2101 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2161 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2221 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2281 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2341 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2401 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2461 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2521 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2581 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2641 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2701 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2761 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2821 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2881 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2941 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     3001 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3061 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3121 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3181 aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc tgcctccttc
     3241 aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc tgctgcctac
     3301 ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc ccagatactt
     3361 caccatcacc tgcagcagga tggccagcta ccatatttgc agatgattct ctgttgccag
     3421 cgccagcagg aggagcagac gggcagcggg caacgtagcc agaccagctc catcccgcag
     3481 aagccccaga ccaacaagtc tgcctacaac agctacagct ggggggccaa ctgaggccct
     3541 gactctcttc tcccggtccc atcttctgag agggcttctc agcctggcaa ctatggaaac
     3601 agcatcaaag agagaaagga atgtgggggg gttccactgc ccccaccccc agcggcccat
     3661 cccatgcctc agcttcatgt ctgtcccatt cccataccat ccccactctg ttgtatgtat
     3721 tataggattt gtattttctc cttttttttt tcttcctttc ctctcctcct ccccccttgc
     3781 attcaagatt atgaaacttt gctgtgggcc ctgccctccc ttttcctcct cctgttcacc
     3841 ctggtggtgt gtgggtgagg tagggagggg ggacccccaa atatatatca gcccaacagc
     3901 cctaagtctc ctcctttatt attaggaaac aaaacaacaa caacaaaaaa atggcgtcat
     3961 gaatatgaac agcattgtca gatgaattag ttgaagtgtt tttttttttt ttgtactgtg
     4021 tcctcaaatt taatggatta atgtgtcttg tatatataaa aagaaaacct ctaccttca
//
LOCUS       XM_032651308            4076 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X3, mRNA.
ACCESSION   XM_032651308
VERSION     XM_032651308.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4076
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3531
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X3"
                     /protein_id="XP_032507199.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWG
                     TEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLD
                     PSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQ
                     FLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFT
                     KRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSS
                     PQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
                     PTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYE
                     QRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTS
                     SIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTS
                     SGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLG
                     SNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQM
                     LQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQ
                     QNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQH
                     GVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHS
                     GTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLP
                     YLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1705..1788
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagacttgat ttcattgggg ttgaggggtc aaattatccc
      901 cgaaaatttg agactgctcc tggtgcatgg aggactgcaa cagaggagtg gggaactgaa
      961 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
     1021 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1081 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1141 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1201 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1261 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1321 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1381 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1441 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1501 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1561 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1621 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1681 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1741 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1801 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1861 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1921 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1981 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     2041 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2101 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2161 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2221 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2281 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2341 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2401 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2461 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2521 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2581 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2641 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2701 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2761 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2821 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2881 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2941 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     3001 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3061 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3121 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3181 aaaacccagt cctttgagaa acaaggtttt cattccggta ctcctgctgc ctccttcaac
     3241 ttgccttcag ccctaggaag tggggggccc atcaatccgg ccacagctgc tgcctaccca
     3301 cctgccccct ttatgcacat tctgaccccc catcagcaac cgcactccca gatacttcac
     3361 catcacctgc agcaggatgg ccagctacca tatttgcaga tgattctctg ttgccagcgc
     3421 cagcaggagg agcagacggg cagcgggcaa cgtagccaga ccagctccat cccgcagaag
     3481 ccccagacca acaagtctgc ctacaacagc tacagctggg gggccaactg aggccctgac
     3541 tctcttctcc cggtcccatc ttctgagagg gcttctcagc ctggcaacta tggaaacagc
     3601 atcaaagaga gaaaggaatg tgggggggtt ccactgcccc cacccccagc ggcccatccc
     3661 atgcctcagc ttcatgtctg tcccattccc ataccatccc cactctgttg tatgtattat
     3721 aggatttgta ttttctcctt ttttttttct tcctttcctc tcctcctccc cccttgcatt
     3781 caagattatg aaactttgct gtgggccctg ccctcccttt tcctcctcct gttcaccctg
     3841 gtggtgtgtg ggtgaggtag ggagggggga cccccaaata tatatcagcc caacagccct
     3901 aagtctcctc ctttattatt aggaaacaaa acaacaacaa caaaaaaatg gcgtcatgaa
     3961 tatgaacagc attgtcagat gaattagttg aagtgttttt tttttttttg tactgtgtcc
     4021 tcaaatttaa tggattaatg tgtcttgtat atataaaaag aaaacctcta ccttca
//
LOCUS       XM_032651317            4028 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X4, mRNA.
ACCESSION   XM_032651317
VERSION     XM_032651317.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4028
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4028
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3483
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X4"
                     /protein_id="XP_032507208.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWG
                     TEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLD
                     PSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQ
                     FLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFT
                     KRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSS
                     PQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
                     PTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYE
                     QRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTS
                     SIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTS
                     SGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLG
                     SNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQM
                     LQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQ
                     QNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQH
                     GVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFH
                     SGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQT
                     GSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1705..1788
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagacttgat ttcattgggg ttgaggggtc aaattatccc
      901 cgaaaatttg agactgctcc tggtgcatgg aggactgcaa cagaggagtg gggaactgaa
      961 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
     1021 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1081 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1141 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1201 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1261 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1321 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1381 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1441 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1501 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1561 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1621 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1681 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1741 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1801 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1861 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1921 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1981 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     2041 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2101 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2161 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2221 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2281 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2341 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2401 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2461 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2521 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2581 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2641 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2701 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2761 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2821 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2881 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2941 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     3001 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3061 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3121 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3181 aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc tgcctccttc
     3241 aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc tgctgcctac
     3301 ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc ccagatactt
     3361 caccatcacc tgcagcagga tggccagacg ggcagcgggc aacgtagcca gaccagctcc
     3421 atcccgcaga agccccagac caacaagtct gcctacaaca gctacagctg gggggccaac
     3481 tgaggccctg actctcttct cccggtccca tcttctgaga gggcttctca gcctggcaac
     3541 tatggaaaca gcatcaaaga gagaaaggaa tgtggggggg ttccactgcc cccaccccca
     3601 gcggcccatc ccatgcctca gcttcatgtc tgtcccattc ccataccatc cccactctgt
     3661 tgtatgtatt ataggatttg tattttctcc tttttttttt cttcctttcc tctcctcctc
     3721 cccccttgca ttcaagatta tgaaactttg ctgtgggccc tgccctccct tttcctcctc
     3781 ctgttcaccc tggtggtgtg tgggtgaggt agggaggggg gacccccaaa tatatatcag
     3841 cccaacagcc ctaagtctcc tcctttatta ttaggaaaca aaacaacaac aacaaaaaaa
     3901 tggcgtcatg aatatgaaca gcattgtcag atgaattagt tgaagtgttt tttttttttt
     3961 tgtactgtgt cctcaaattt aatggattaa tgtgtcttgt atatataaaa agaaaacctc
     4021 taccttca
//
LOCUS       XM_032651323            4025 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X5, mRNA.
ACCESSION   XM_032651323
VERSION     XM_032651323.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4025
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4025
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3480
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X5"
                     /protein_id="XP_032507214.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWG
                     TEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLD
                     PSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQ
                     FLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFT
                     KRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSS
                     PQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
                     PTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYE
                     QRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTS
                     SIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTS
                     SGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLG
                     SNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQM
                     LQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQ
                     QNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQH
                     GVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHS
                     GTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTG
                     SGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1705..1788
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagacttgat ttcattgggg ttgaggggtc aaattatccc
      901 cgaaaatttg agactgctcc tggtgcatgg aggactgcaa cagaggagtg gggaactgaa
      961 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
     1021 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1081 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1141 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1201 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1261 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1321 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1381 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1441 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1501 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1561 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1621 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1681 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1741 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1801 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1861 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1921 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1981 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     2041 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2101 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2161 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2221 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2281 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2341 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2401 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2461 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2521 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2581 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2641 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2701 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2761 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2821 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2881 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2941 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     3001 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3061 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3121 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3181 aaaacccagt cctttgagaa acaaggtttt cattccggta ctcctgctgc ctccttcaac
     3241 ttgccttcag ccctaggaag tggggggccc atcaatccgg ccacagctgc tgcctaccca
     3301 cctgccccct ttatgcacat tctgaccccc catcagcaac cgcactccca gatacttcac
     3361 catcacctgc agcaggatgg ccagacgggc agcgggcaac gtagccagac cagctccatc
     3421 ccgcagaagc cccagaccaa caagtctgcc tacaacagct acagctgggg ggccaactga
     3481 ggccctgact ctcttctccc ggtcccatct tctgagaggg cttctcagcc tggcaactat
     3541 ggaaacagca tcaaagagag aaaggaatgt gggggggttc cactgccccc acccccagcg
     3601 gcccatccca tgcctcagct tcatgtctgt cccattccca taccatcccc actctgttgt
     3661 atgtattata ggatttgtat tttctccttt tttttttctt cctttcctct cctcctcccc
     3721 ccttgcattc aagattatga aactttgctg tgggccctgc cctccctttt cctcctcctg
     3781 ttcaccctgg tggtgtgtgg gtgaggtagg gaggggggac ccccaaatat atatcagccc
     3841 aacagcccta agtctcctcc tttattatta ggaaacaaaa caacaacaac aaaaaaatgg
     3901 cgtcatgaat atgaacagca ttgtcagatg aattagttga agtgtttttt ttttttttgt
     3961 actgtgtcct caaatttaat ggattaatgt gtcttgtata tataaaaaga aaacctctac
     4021 cttca
//
LOCUS       XM_032651331            3938 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X6, mRNA.
ACCESSION   XM_032651331
VERSION     XM_032651331.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3938
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3477
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X6"
                     /protein_id="XP_032507222.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWG
                     TEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLD
                     PSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQ
                     FLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFT
                     KRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSS
                     PQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
                     PTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYE
                     QRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTS
                     SIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTS
                     SGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLG
                     SNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQM
                     LQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQ
                     QNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQH
                     GVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFH
                     SGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQL
                     PYLQMILCCQRQQEEQDILSLVDDQLDE"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1705..1788
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagacttgat ttcattgggg ttgaggggtc aaattatccc
      901 cgaaaatttg agactgctcc tggtgcatgg aggactgcaa cagaggagtg gggaactgaa
      961 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
     1021 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1081 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1141 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1201 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1261 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1321 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1381 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1441 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1501 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1561 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1621 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1681 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1741 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1801 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1861 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1921 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1981 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     2041 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2101 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2161 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2221 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2281 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2341 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2401 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2461 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2521 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2581 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2641 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2701 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2761 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2821 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2881 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2941 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     3001 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3061 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3121 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3181 aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc tgcctccttc
     3241 aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc tgctgcctac
     3301 ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc ccagatactt
     3361 caccatcacc tgcagcagga tggccagcta ccatatttgc agatgattct ctgttgccag
     3421 cgccagcagg aggagcagga tatcctcagt ctcgtcgatg accagcttga tgaataagta
     3481 ttactgtacc aactgggcct tctctagcag gccccgaagg cagtggaata aaatgaaatc
     3541 ttcgcccttt aagaactcct ctgaccttaa tgtgctagta tcttgccctt gagggcattc
     3601 ccttccccct ctcccctaag aattacacag cgtggtgcct ggaaagaatc actgcaaatc
     3661 ttcatttcct ccagatctac agcagatttt aggcaatgaa gggatagcag atattgggtg
     3721 gaaagggaaa gggttaagca ggagttgaaa gaaatggctt tgtagaatca aagtgtaatt
     3781 tagatggatc caggcaaatg aactggaaag aaatgagggc aacatgcact gttggctagc
     3841 aaaactgaag cagtagttct tacttcttga gtgctttcac ttcaagtagc taatatccaa
     3901 ccccttgaaa aggagtctag agcaaggcca gggttggg
//
LOCUS       XM_032651342            4019 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X7, mRNA.
ACCESSION   XM_032651342
VERSION     XM_032651342.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4019
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4019
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3474
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X7"
                     /protein_id="XP_032507233.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPI
                     NPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSG
                     QRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1645..1728
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagtgcatgg aggactgcaa cagaggagtg gggaactgaa
      901 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
      961 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1021 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1081 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1141 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1201 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1261 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1321 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1381 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1441 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1501 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1561 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1621 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1681 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1741 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1801 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1861 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1921 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     1981 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2041 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2101 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2161 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2221 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2281 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2341 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2401 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2461 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2521 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2581 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2641 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2701 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2761 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2821 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2881 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     2941 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3001 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3061 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3121 aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc tgcctccttc
     3181 aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc tgctgcctac
     3241 ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc ccagatactt
     3301 caccatcacc tgcagcagga tggccagcta ccatatttgc agatgattct ctgttgccag
     3361 cgccagcagg aggagcagac gggcagcggg caacgtagcc agaccagctc catcccgcag
     3421 aagccccaga ccaacaagtc tgcctacaac agctacagct ggggggccaa ctgaggccct
     3481 gactctcttc tcccggtccc atcttctgag agggcttctc agcctggcaa ctatggaaac
     3541 agcatcaaag agagaaagga atgtgggggg gttccactgc ccccaccccc agcggcccat
     3601 cccatgcctc agcttcatgt ctgtcccatt cccataccat ccccactctg ttgtatgtat
     3661 tataggattt gtattttctc cttttttttt tcttcctttc ctctcctcct ccccccttgc
     3721 attcaagatt atgaaacttt gctgtgggcc ctgccctccc ttttcctcct cctgttcacc
     3781 ctggtggtgt gtgggtgagg tagggagggg ggacccccaa atatatatca gcccaacagc
     3841 cctaagtctc ctcctttatt attaggaaac aaaacaacaa caacaaaaaa atggcgtcat
     3901 gaatatgaac agcattgtca gatgaattag ttgaagtgtt tttttttttt ttgtactgtg
     3961 tcctcaaatt taatggatta atgtgtcttg tatatataaa aagaaaacct ctaccttca
//
LOCUS       XM_032651349            3991 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X8, mRNA.
ACCESSION   XM_032651349
VERSION     XM_032651349.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3991
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             99..3446
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X7"
                     /protein_id="XP_032507240.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPI
                     NPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSG
                     QRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    246..359
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1617..1700
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg agactgagta
       61 ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg gtgggcacta
      121 accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag cacaagcagc
      181 ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac cataatgatg
      241 ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac caggatgaat
      301 gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat gtactgctgg
      361 aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga gtctcaggac
      421 agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga gaccgggaca
      481 gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc agccgcggac
      541 gagagtgtat gcatggggct ttaacaaaac tagttgtggt tcgaggtcag gaaaatggat
      601 tagatggcac caagagtgga gggccttctg gaagaggcac agaaagaggc agaagaggtc
      661 gtggccgagg cagaggtggc tctggtaggc ggggaggaag gttttctgct caaggaatgg
      721 gaacctttaa cccagctgat tatgcagagc cggccaatac tgatgataac tatggcaata
      781 atagcggcaa tacatggaac aacactggcc actttgaacc agatgatggg acgagtgcat
      841 ggaggactgc aacagaggag tggggaactg aagattggaa tgaagatctt tctgagacca
      901 agatcttcac tgcctctaat gtgtcgtcag tgcctctgcc tgcggagaat gtgacaatca
      961 ctgctggtca gagaattgac cttgctgttc tgttggggaa gacaccatct tcaatggaga
     1021 atgattcatc taatctggat ccatctcagg ctccttctct tgcccagcct ctggtgttca
     1081 gtaactcgaa gcagagtgcc atatcacagc ctgcttcagg gaacacgttt tctcatcaca
     1141 gtatggtgag catgttaggg aaaggatttg gtgatgtcgg tgaagctaaa ggcagcagca
     1201 ccacaggctc ccagttcttg gagcaattca agactgctca ggccctggct cagttggcag
     1261 ctcagcattc tcaatctgga accaccacca cctcctcttg ggacatgggc tccaccacac
     1321 aatccccatc gctggtgcag tatgatttga agaacccaaa tgattcaaca gtgcacagcc
     1381 cctttacaaa gcgccaggct ttcacctcat cttcaaccat gatggaggtg ttccttcagg
     1441 agaagccacc tgcagtggct acctccactg ctgcacctcc acccccatct tctcctctgc
     1501 caagcaaatc cacctcggct ccacaaatgt ctcctgggtc ttcagacaac caatcgtcca
     1561 gccctcagcc ggctcagcaa aaactgaaac agcagaagaa aaaagcctcc ttgacttcta
     1621 agattcctgc tctggctgtg gagatgcctg gctcggcaga tatctcaggg ctaaatctgc
     1681 agtttggggc gttgcagttt gggtcagagc ctgtcctttc tgattatgag tccaccccca
     1741 ccacgagcgc ctcttcaagc caggctccaa gtagcctcta taccagcacg gccagtgaat
     1801 cttcatccac aatttcatct aaccagagtc aggagtctgg ttatcagagt ggcccaattc
     1861 agtcgacaac ctatacctcc caaaataatg ctcagggccc tctatatgaa cagagatcca
     1921 cacagactcg gcggtacccc agctccatct cttcatcacc ccaaaaggac ttgactcagg
     1981 caaagaatgg cttcagttct gtgcaggcca cgcagttaca gaccacgcaa tctgttgaag
     2041 gtgctacagg ctctgcagtg aaatctgact caccttccac ttctagcatc ccccctctca
     2101 gtgaaacggt atctgcagct tccttactga cgacaaccaa tcagcactca tcttccttgg
     2161 gtggcttgag ccacaatgag gagattccaa atagtaccac cacacaacac agcagcacgt
     2221 tatctactca gcagaatacc ctttcgtcat caacatcttc tgggcgcact tcgacatcca
     2281 ctcttttgca cacaagcgtg gagagtgagg cgaatcttca ttcttcctcc agcactttct
     2341 ccaccacatc cagcacagtc tctgcacctc ccccagtggt cagtgtctct tccagtctca
     2401 atagtggcag tagcttgggc ctcagcctag gcagcaactc taccgtcaca gcctccactc
     2461 gaagctcagt tgctacaact tcaggaaaag ctcctcccaa cctccctcct ggggtcccgc
     2521 cgttgttgcc taatccatat attatggctc cagggctgtt acatgcctac ccgccacaag
     2581 tatatggtta tgatgacttg cagatgcttc agacaagatt tccattggat tactacagca
     2641 tcccatttcc cacacccacc actccgctga ctgggaggga tggtagcctg gccagcaacc
     2701 cttattctgg tgacctcaca aagttcggcc gtggggatgc ctcctccccg gccccggcca
     2761 caaccttggc ccagccccag cagaaccaga cacagactca ccataccacg cagcagacat
     2821 tcctgaaccc ggcgctgcct cctggctaca gttacaccag cctgccatac tacacagggg
     2881 ttccgggcct ccccagcacc ttccagtatg ggcctgctgt gttccctgtg gctcctacct
     2941 cttccaagca gcatggtgtg aatgtcagtg tgaatgcatc agccacccct ttccaacagc
     3001 caagtggata tgggtctcat ggatacaaca ctggtgtatc agtcacctcc agtaacacag
     3061 gcgtgccaga tatctcgggt tctgtgtact ccaaaaccca gcagtccttt gagaaacaag
     3121 gttttcattc cggtactcct gctgcctcct tcaacttgcc ttcagcccta ggaagtgggg
     3181 ggcccatcaa tccggccaca gctgctgcct acccacctgc cccctttatg cacattctga
     3241 ccccccatca gcaaccgcac tcccagatac ttcaccatca cctgcagcag gatggccagc
     3301 taccatattt gcagatgatt ctctgttgcc agcgccagca ggaggagcag acgggcagcg
     3361 ggcaacgtag ccagaccagc tccatcccgc agaagcccca gaccaacaag tctgcctaca
     3421 acagctacag ctggggggcc aactgaggcc ctgactctct tctcccggtc ccatcttctg
     3481 agagggcttc tcagcctggc aactatggaa acagcatcaa agagagaaag gaatgtgggg
     3541 gggttccact gcccccaccc ccagcggccc atcccatgcc tcagcttcat gtctgtccca
     3601 ttcccatacc atccccactc tgttgtatgt attataggat ttgtattttc tccttttttt
     3661 tttcttcctt tcctctcctc ctcccccctt gcattcaaga ttatgaaact ttgctgtggg
     3721 ccctgccctc ccttttcctc ctcctgttca ccctggtggt gtgtgggtga ggtagggagg
     3781 ggggaccccc aaatatatat cagcccaaca gccctaagtc tcctccttta ttattaggaa
     3841 acaaaacaac aacaacaaaa aaatggcgtc atgaatatga acagcattgt cagatgaatt
     3901 agttgaagtg tttttttttt ttttgtactg tgtcctcaaa tttaatggat taatgtgtct
     3961 tgtatatata aaaagaaaac ctctaccttc a
//
LOCUS       XM_032651359            4019 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X9, mRNA.
ACCESSION   XM_032651359
VERSION     XM_032651359.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4019
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4019
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 95% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116763489"
     CDS             130..3474
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X8"
                     /protein_id="XP_032507250.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSRILNIFLCAIRTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLH
                     SSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAP
                     PNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPL
                     TGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPP
                     GYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGS
                     HGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPIN
                     PATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQ
                     RSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag caggatattg
     2221 aatatatttc tatgtgctat acgcacgtta tctactcagc agaataccct ttcgtcatca
     2281 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2341 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2401 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2461 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2521 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2581 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2641 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2701 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2761 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2821 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2881 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     2941 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3001 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3061 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3121 aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc tgcctccttc
     3181 aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc tgctgcctac
     3241 ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc ccagatactt
     3301 caccatcacc tgcagcagga tggccagcta ccatatttgc agatgattct ctgttgccag
     3361 cgccagcagg aggagcagac gggcagcggg caacgtagcc agaccagctc catcccgcag
     3421 aagccccaga ccaacaagtc tgcctacaac agctacagct ggggggccaa ctgaggccct
     3481 gactctcttc tcccggtccc atcttctgag agggcttctc agcctggcaa ctatggaaac
     3541 agcatcaaag agagaaagga atgtgggggg gttccactgc ccccaccccc agcggcccat
     3601 cccatgcctc agcttcatgt ctgtcccatt cccataccat ccccactctg ttgtatgtat
     3661 tataggattt gtattttctc cttttttttt tcttcctttc ctctcctcct ccccccttgc
     3721 attcaagatt atgaaacttt gctgtgggcc ctgccctccc ttttcctcct cctgttcacc
     3781 ctggtggtgt gtgggtgagg tagggagggg ggacccccaa atatatatca gcccaacagc
     3841 cctaagtctc ctcctttatt attaggaaac aaaacaacaa caacaaaaaa atggcgtcat
     3901 gaatatgaac agcattgtca gatgaattag ttgaagtgtt tttttttttt ttgtactgtg
     3961 tcctcaaatt taatggatta atgtgtcttg tatatataaa aagaaaacct ctaccttca
//
LOCUS       XM_032651369            3998 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X10, mRNA.
ACCESSION   XM_032651369
VERSION     XM_032651369.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3998
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3998
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3453
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X9"
                     /protein_id="XP_032507260.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSET
                     KIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPL
                     VFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQAL
                     AQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTM
                     MEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQ
                     KKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAP
                     SSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPS
                     SISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSA
                     ASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLH
                     TSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRS
                     SVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYS
                     IPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQ
                     QTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASAT
                     PFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLP
                     SALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSI
                     PQKPQTNKSAYNSYSWGAN"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1675..1758
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagacttgat
      841 ttcattgggg ttgaggggtc aaattatccc cgaaaatttg agactgctcc tggtgcatgg
      901 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      961 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
     1021 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1081 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1141 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1201 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1261 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1321 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1381 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1441 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1501 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1561 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1621 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1681 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1741 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1801 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1861 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1921 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1981 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     2041 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2101 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2161 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2221 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2281 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2341 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2401 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2461 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2521 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2581 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2641 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2701 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2761 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2821 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2881 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2941 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     3001 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3061 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3121 gtgccagata tctcgggttc tgtgtactcc aaaacccagc agtcctttga gaaacaaggt
     3181 tttcattccg gtactcctgc tgcctccttc aacttgcctt cagccctagg aagtgggggg
     3241 cccatcaatc cggccacagc tgctgcctac ccacctgccc cctttatgca cattctgacc
     3301 ccccatcagc aaccgcactc ccagatactt caccatcacc tgcagcagga tggccagacg
     3361 ggcagcgggc aacgtagcca gaccagctcc atcccgcaga agccccagac caacaagtct
     3421 gcctacaaca gctacagctg gggggccaac tgaggccctg actctcttct cccggtccca
     3481 tcttctgaga gggcttctca gcctggcaac tatggaaaca gcatcaaaga gagaaaggaa
     3541 tgtggggggg ttccactgcc cccaccccca gcggcccatc ccatgcctca gcttcatgtc
     3601 tgtcccattc ccataccatc cccactctgt tgtatgtatt ataggatttg tattttctcc
     3661 tttttttttt cttcctttcc tctcctcctc cccccttgca ttcaagatta tgaaactttg
     3721 ctgtgggccc tgccctccct tttcctcctc ctgttcaccc tggtggtgtg tgggtgaggt
     3781 agggaggggg gacccccaaa tatatatcag cccaacagcc ctaagtctcc tcctttatta
     3841 ttaggaaaca aaacaacaac aacaaaaaaa tggcgtcatg aatatgaaca gcattgtcag
     3901 atgaattagt tgaagtgttt tttttttttt tgtactgtgt cctcaaattt aatggattaa
     3961 tgtgtcttgt atatataaaa agaaaacctc taccttca
//
LOCUS       XM_032651380            3993 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X11, mRNA.
ACCESSION   XM_032651380
VERSION     XM_032651380.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3993
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             125..3448
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X9"
                     /protein_id="XP_032507271.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSET
                     KIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPL
                     VFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQAL
                     AQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTM
                     MEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQ
                     KKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAP
                     SSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPS
                     SISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSA
                     ASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLH
                     TSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRS
                     SVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYS
                     IPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQ
                     QTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASAT
                     PFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLP
                     SALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSI
                     PQKPQTNKSAYNSYSWGAN"
     misc_feature    272..385
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1670..1753
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 agtggggggg gccatgcggc tagagcctga gacgggggag agcgagaaag agcgcgagcg
       61 agctaggcct gggccccgcc tgagtattct accttgtaaa tactgttatt tgtatatact
      121 gtaaatgatg acgtcggtgg gcactaaccg agcccgggga aactgggaac cacctcaaaa
      181 ccaaaatcag acacagcaca agcagcggcc ccaggccact gcggaacaaa ttcgacttgc
      241 acagatgatt tcggaccata atgatgctga ctttgaggaa aaggtgaaac aattgattga
      301 tatcacaggc aagaaccagg atgaatgtgt cattgctttg catgactgca acggagatgt
      361 caacagagcc atcaatgtac tgctggaagg aaacccagat acgcattcct gggagatggt
      421 tgggaagaag aaaggagtct caggacagaa ggacagtggc caaacggaat ccaacgagga
      481 aggcaaagaa aatcgagacc gggacagaga ctatagtcgg cgacgtggtg ggccaccaag
      541 acgggggaga ggtgccagcc gcggacgaga gtttcgaggt caggaaaatg gattagatgg
      601 caccaagagt ggagggcctt ctggaagagg cacagaaaga ggcagaagag gtcgtggccg
      661 aggcagaggt ggctctggta ggcggggagg aaggttttct gctcaaggaa tgggaacctt
      721 taacccagct gattatgcag agccggccaa tactgatgat aactatggca ataatagcgg
      781 caatacatgg aacaacactg gccactttga accagatgat gggacgagac ttgatttcat
      841 tggggttgag gggtcaaatt atccccgaaa atttgagact gctcctggtg catggaggac
      901 tgcaacagag gagtggggaa ctgaagattg gaatgaagat ctttctgaga ccaagatctt
      961 cactgcctct aatgtgtcgt cagtgcctct gcctgcggag aatgtgacaa tcactgctgg
     1021 tcagagaatt gaccttgctg ttctgttggg gaagacacca tcttcaatgg agaatgattc
     1081 atctaatctg gatccatctc aggctccttc tcttgcccag cctctggtgt tcagtaactc
     1141 gaagcagagt gccatatcac agcctgcttc agggaacacg ttttctcatc acagtatggt
     1201 gagcatgtta gggaaaggat ttggtgatgt cggtgaagct aaaggcagca gcaccacagg
     1261 ctcccagttc ttggagcaat tcaagactgc tcaggccctg gctcagttgg cagctcagca
     1321 ttctcaatct ggaaccacca ccacctcctc ttgggacatg ggctccacca cacaatcccc
     1381 atcgctggtg cagtatgatt tgaagaaccc aaatgattca acagtgcaca gcccctttac
     1441 aaagcgccag gctttcacct catcttcaac catgatggag gtgttccttc aggagaagcc
     1501 acctgcagtg gctacctcca ctgctgcacc tccaccccca tcttctcctc tgccaagcaa
     1561 atccacctcg gctccacaaa tgtctcctgg gtcttcagac aaccaatcgt ccagccctca
     1621 gccggctcag caaaaactga aacagcagaa gaaaaaagcc tccttgactt ctaagattcc
     1681 tgctctggct gtggagatgc ctggctcggc agatatctca gggctaaatc tgcagtttgg
     1741 ggcgttgcag tttgggtcag agcctgtcct ttctgattat gagtccaccc ccaccacgag
     1801 cgcctcttca agccaggctc caagtagcct ctataccagc acggccagtg aatcttcatc
     1861 cacaatttca tctaaccaga gtcaggagtc tggttatcag agtggcccaa ttcagtcgac
     1921 aacctatacc tcccaaaata atgctcaggg ccctctatat gaacagagat ccacacagac
     1981 tcggcggtac cccagctcca tctcttcatc accccaaaag gacttgactc aggcaaagaa
     2041 tggcttcagt tctgtgcagg ccacgcagtt acagaccacg caatctgttg aaggtgctac
     2101 aggctctgca gtgaaatctg actcaccttc cacttctagc atcccccctc tcagtgaaac
     2161 ggtatctgca gcttccttac tgacgacaac caatcagcac tcatcttcct tgggtggctt
     2221 gagccacaat gaggagattc caaatagtac caccacacaa cacagcagca cgttatctac
     2281 tcagcagaat accctttcgt catcaacatc ttctgggcgc acttcgacat ccactctttt
     2341 gcacacaagc gtggagagtg aggcgaatct tcattcttcc tccagcactt tctccaccac
     2401 atccagcaca gtctctgcac ctcccccagt ggtcagtgtc tcttccagtc tcaatagtgg
     2461 cagtagcttg ggcctcagcc taggcagcaa ctctaccgtc acagcctcca ctcgaagctc
     2521 agttgctaca acttcaggaa aagctcctcc caacctccct cctggggtcc cgccgttgtt
     2581 gcctaatcca tatattatgg ctccagggct gttacatgcc tacccgccac aagtatatgg
     2641 ttatgatgac ttgcagatgc ttcagacaag atttccattg gattactaca gcatcccatt
     2701 tcccacaccc accactccgc tgactgggag ggatggtagc ctggccagca acccttattc
     2761 tggtgacctc acaaagttcg gccgtgggga tgcctcctcc ccggccccgg ccacaacctt
     2821 ggcccagccc cagcagaacc agacacagac tcaccatacc acgcagcaga cattcctgaa
     2881 cccggcgctg cctcctggct acagttacac cagcctgcca tactacacag gggttccggg
     2941 cctccccagc accttccagt atgggcctgc tgtgttccct gtggctccta cctcttccaa
     3001 gcagcatggt gtgaatgtca gtgtgaatgc atcagccacc cctttccaac agccaagtgg
     3061 atatgggtct catggataca acactggtgt atcagtcacc tccagtaaca caggcgtgcc
     3121 agatatctcg ggttctgtgt actccaaaac ccagcagtcc tttgagaaac aaggttttca
     3181 ttccggtact cctgctgcct ccttcaactt gccttcagcc ctaggaagtg gggggcccat
     3241 caatccggcc acagctgctg cctacccacc tgcccccttt atgcacattc tgacccccca
     3301 tcagcaaccg cactcccaga tacttcacca tcacctgcag caggatggcc agacgggcag
     3361 cgggcaacgt agccagacca gctccatccc gcagaagccc cagaccaaca agtctgccta
     3421 caacagctac agctgggggg ccaactgagg ccctgactct cttctcccgg tcccatcttc
     3481 tgagagggct tctcagcctg gcaactatgg aaacagcatc aaagagagaa aggaatgtgg
     3541 gggggttcca ctgcccccac ccccagcggc ccatcccatg cctcagcttc atgtctgtcc
     3601 cattcccata ccatccccac tctgttgtat gtattatagg atttgtattt tctccttttt
     3661 tttttcttcc tttcctctcc tcctcccccc ttgcattcaa gattatgaaa ctttgctgtg
     3721 ggccctgccc tcccttttcc tcctcctgtt caccctggtg gtgtgtgggt gaggtaggga
     3781 ggggggaccc ccaaatatat atcagcccaa cagccctaag tctcctcctt tattattagg
     3841 aaacaaaaca acaacaacaa aaaaatggcg tcatgaatat gaacagcatt gtcagatgaa
     3901 ttagttgaag tgtttttttt ttttttgtac tgtgtcctca aatttaatgg attaatgtgt
     3961 cttgtatata taaaaagaaa acctctacct tca
//
LOCUS       XM_032651388            3904 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X12, mRNA.
ACCESSION   XM_032651388
VERSION     XM_032651388.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3904
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3444
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X10"
                     /protein_id="XP_032507279.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSET
                     KIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPL
                     VFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQAL
                     AQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTM
                     MEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQ
                     KKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAP
                     SSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPS
                     SISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSA
                     ASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLH
                     TSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRS
                     SVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYS
                     IPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQ
                     QTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASAT
                     PFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLP
                     SALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQR
                     QQEEQDILSLVDDQLDE"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1672..1755
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtttcgag gtcaggaaaa tggattagat
      601 ggcaccaaga gtggagggcc ttctggaaga ggcacagaaa gaggcagaag aggtcgtggc
      661 cgaggcagag gtggctctgg taggcgggga ggaaggtttt ctgctcaagg aatgggaacc
      721 tttaacccag ctgattatgc agagccggcc aatactgatg ataactatgg caataatagc
      781 ggcaatacat ggaacaacac tggccacttt gaaccagatg atgggacgag acttgatttc
      841 attggggttg aggggtcaaa ttatccccga aaatttgaga ctgctcctgg tgcatggagg
      901 actgcaacag aggagtgggg aactgaagat tggaatgaag atctttctga gaccaagatc
      961 ttcactgcct ctaatgtgtc gtcagtgcct ctgcctgcgg agaatgtgac aatcactgct
     1021 ggtcagagaa ttgaccttgc tgttctgttg gggaagacac catcttcaat ggagaatgat
     1081 tcatctaatc tggatccatc tcaggctcct tctcttgccc agcctctggt gttcagtaac
     1141 tcgaagcaga gtgccatatc acagcctgct tcagggaaca cgttttctca tcacagtatg
     1201 gtgagcatgt tagggaaagg atttggtgat gtcggtgaag ctaaaggcag cagcaccaca
     1261 ggctcccagt tcttggagca attcaagact gctcaggccc tggctcagtt ggcagctcag
     1321 cattctcaat ctggaaccac caccacctcc tcttgggaca tgggctccac cacacaatcc
     1381 ccatcgctgg tgcagtatga tttgaagaac ccaaatgatt caacagtgca cagccccttt
     1441 acaaagcgcc aggctttcac ctcatcttca accatgatgg aggtgttcct tcaggagaag
     1501 ccacctgcag tggctacctc cactgctgca cctccacccc catcttctcc tctgccaagc
     1561 aaatccacct cggctccaca aatgtctcct gggtcttcag acaaccaatc gtccagccct
     1621 cagccggctc agcaaaaact gaaacagcag aagaaaaaag cctccttgac ttctaagatt
     1681 cctgctctgg ctgtggagat gcctggctcg gcagatatct cagggctaaa tctgcagttt
     1741 ggggcgttgc agtttgggtc agagcctgtc ctttctgatt atgagtccac ccccaccacg
     1801 agcgcctctt caagccaggc tccaagtagc ctctatacca gcacggccag tgaatcttca
     1861 tccacaattt catctaacca gagtcaggag tctggttatc agagtggccc aattcagtcg
     1921 acaacctata cctcccaaaa taatgctcag ggccctctat atgaacagag atccacacag
     1981 actcggcggt accccagctc catctcttca tcaccccaaa aggacttgac tcaggcaaag
     2041 aatggcttca gttctgtgca ggccacgcag ttacagacca cgcaatctgt tgaaggtgct
     2101 acaggctctg cagtgaaatc tgactcacct tccacttcta gcatcccccc tctcagtgaa
     2161 acggtatctg cagcttcctt actgacgaca accaatcagc actcatcttc cttgggtggc
     2221 ttgagccaca atgaggagat tccaaatagt accaccacac aacacagcag cacgttatct
     2281 actcagcaga ataccctttc gtcatcaaca tcttctgggc gcacttcgac atccactctt
     2341 ttgcacacaa gcgtggagag tgaggcgaat cttcattctt cctccagcac tttctccacc
     2401 acatccagca cagtctctgc acctccccca gtggtcagtg tctcttccag tctcaatagt
     2461 ggcagtagct tgggcctcag cctaggcagc aactctaccg tcacagcctc cactcgaagc
     2521 tcagttgcta caacttcagg aaaagctcct cccaacctcc ctcctggggt cccgccgttg
     2581 ttgcctaatc catatattat ggctccaggg ctgttacatg cctacccgcc acaagtatat
     2641 ggttatgatg acttgcagat gcttcagaca agatttccat tggattacta cagcatccca
     2701 tttcccacac ccaccactcc gctgactggg agggatggta gcctggccag caacccttat
     2761 tctggtgacc tcacaaagtt cggccgtggg gatgcctcct ccccggcccc ggccacaacc
     2821 ttggcccagc cccagcagaa ccagacacag actcaccata ccacgcagca gacattcctg
     2881 aacccggcgc tgcctcctgg ctacagttac accagcctgc catactacac aggggttccg
     2941 ggcctcccca gcaccttcca gtatgggcct gctgtgttcc ctgtggctcc tacctcttcc
     3001 aagcagcatg gtgtgaatgt cagtgtgaat gcatcagcca cccctttcca acagccaagt
     3061 ggatatgggt ctcatggata caacactggt gtatcagtca cctccagtaa cacaggcgtg
     3121 ccagatatct cgggttctgt gtactccaaa acccagcagt cctttgagaa acaaggtttt
     3181 cattccggta ctcctgctgc ctccttcaac ttgccttcag ccctaggaag tggggggccc
     3241 atcaatccgg ccacagctgc tgcctaccca cctgccccct ttatgcacat tctgaccccc
     3301 catcagcaac cgcactccca gatacttcac catcacctgc agcaggatgg ccagctacca
     3361 tatttgcaga tgattctctg ttgccagcgc cagcaggagg agcaggatat cctcagtctc
     3421 gtcgatgacc agcttgatga ataagtatta ctgtaccaac tgggccttct ctagcaggcc
     3481 ccgaaggcag tggaataaaa tgaaatcttc gccctttaag aactcctctg accttaatgt
     3541 gctagtatct tgcccttgag ggcattccct tccccctctc ccctaagaat tacacagcgt
     3601 ggtgcctgga aagaatcact gcaaatcttc atttcctcca gatctacagc agattttagg
     3661 caatgaaggg atagcagata ttgggtggaa agggaaaggg ttaagcagga gttgaaagaa
     3721 atggctttgt agaatcaaag tgtaatttag atggatccag gcaaatgaac tggaaagaaa
     3781 tgagggcaac atgcactgtt ggctagcaaa actgaagcag tagttcttac ttcttgagtg
     3841 ctttcacttc aagtagctaa tatccaaccc cttgaaaagg agtctagagc aaggccaggg
     3901 ttgg
//
LOCUS       XM_032651397            3989 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X13, mRNA.
ACCESSION   XM_032651397
VERSION     XM_032651397.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3989
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3989
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3444
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X11"
                     /protein_id="XP_032507288.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQK
                     PQTNKSAYNSYSWGAN"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3061 gtgccagata tctcgggttc tgtgtactcc aaaacccagc agtcctttga gaaacaaggt
     3121 tttcattccg gtactcctgc tgcctccttc aacttgcctt cagccctagg aagtgggggg
     3181 cccatcaatc cggccacagc tgctgcctac ccacctgccc cctttatgca cattctgacc
     3241 ccccatcagc aaccgcactc ccagatactt caccatcacc tgcagcagga tggccagcta
     3301 ccatatttgc agatgattct ctgttgccag cgccagcagg aggagcagac gggcagcggg
     3361 caacgtagcc agaccagctc catcccgcag aagccccaga ccaacaagtc tgcctacaac
     3421 agctacagct ggggggccaa ctgaggccct gactctcttc tcccggtccc atcttctgag
     3481 agggcttctc agcctggcaa ctatggaaac agcatcaaag agagaaagga atgtgggggg
     3541 gttccactgc ccccaccccc agcggcccat cccatgcctc agcttcatgt ctgtcccatt
     3601 cccataccat ccccactctg ttgtatgtat tataggattt gtattttctc cttttttttt
     3661 tcttcctttc ctctcctcct ccccccttgc attcaagatt atgaaacttt gctgtgggcc
     3721 ctgccctccc ttttcctcct cctgttcacc ctggtggtgt gtgggtgagg tagggagggg
     3781 ggacccccaa atatatatca gcccaacagc cctaagtctc ctcctttatt attaggaaac
     3841 aaaacaacaa caacaaaaaa atggcgtcat gaatatgaac agcattgtca gatgaattag
     3901 ttgaagtgtt tttttttttt ttgtactgtg tcctcaaatt taatggatta atgtgtcttg
     3961 tatatataaa aagaaaacct ctaccttca
//
LOCUS       XM_032651407            3958 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X14, mRNA.
ACCESSION   XM_032651407
VERSION     XM_032651407.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3958
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3958
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             99..3413
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X11"
                     /protein_id="XP_032507298.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQK
                     PQTNKSAYNSYSWGAN"
     misc_feature    246..359
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1584..1667
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg agactgagta
       61 ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg gtgggcacta
      121 accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag cacaagcagc
      181 ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac cataatgatg
      241 ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac caggatgaat
      301 gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat gtactgctgg
      361 aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga gtctcaggac
      421 agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga gaccgggaca
      481 gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc agccgcggac
      541 gagagtttcg aggtcaggaa aatggattag atggcaccaa gagtggaggg ccttctggaa
      601 gaggcacaga aagaggcaga agaggtcgtg gccgaggcag aggtggctct ggtaggcggg
      661 gaggaaggtt ttctgctcaa ggaatgggaa cctttaaccc agctgattat gcagagccgg
      721 ccaatactga tgataactat ggcaataata gcggcaatac atggaacaac actggccact
      781 ttgaaccaga tgatgggacg agtgcatgga ggactgcaac agaggagtgg ggaactgaag
      841 attggaatga agatctttct gagaccaaga tcttcactgc ctctaatgtg tcgtcagtgc
      901 ctctgcctgc ggagaatgtg acaatcactg ctggtcagag aattgacctt gctgttctgt
      961 tggggaagac accatcttca atggagaatg attcatctaa tctggatcca tctcaggctc
     1021 cttctcttgc ccagcctctg gtgttcagta actcgaagca gagtgccata tcacagcctg
     1081 cttcagggaa cacgttttct catcacagta tggtgagcat gttagggaaa ggatttggtg
     1141 atgtcggtga agctaaaggc agcagcacca caggctccca gttcttggag caattcaaga
     1201 ctgctcaggc cctggctcag ttggcagctc agcattctca atctggaacc accaccacct
     1261 cctcttggga catgggctcc accacacaat ccccatcgct ggtgcagtat gatttgaaga
     1321 acccaaatga ttcaacagtg cacagcccct ttacaaagcg ccaggctttc acctcatctt
     1381 caaccatgat ggaggtgttc cttcaggaga agccacctgc agtggctacc tccactgctg
     1441 cacctccacc cccatcttct cctctgccaa gcaaatccac ctcggctcca caaatgtctc
     1501 ctgggtcttc agacaaccaa tcgtccagcc ctcagccggc tcagcaaaaa ctgaaacagc
     1561 agaagaaaaa agcctccttg acttctaaga ttcctgctct ggctgtggag atgcctggct
     1621 cggcagatat ctcagggcta aatctgcagt ttggggcgtt gcagtttggg tcagagcctg
     1681 tcctttctga ttatgagtcc acccccacca cgagcgcctc ttcaagccag gctccaagta
     1741 gcctctatac cagcacggcc agtgaatctt catccacaat ttcatctaac cagagtcagg
     1801 agtctggtta tcagagtggc ccaattcagt cgacaaccta tacctcccaa aataatgctc
     1861 agggccctct atatgaacag agatccacac agactcggcg gtaccccagc tccatctctt
     1921 catcacccca aaaggacttg actcaggcaa agaatggctt cagttctgtg caggccacgc
     1981 agttacagac cacgcaatct gttgaaggtg ctacaggctc tgcagtgaaa tctgactcac
     2041 cttccacttc tagcatcccc cctctcagtg aaacggtatc tgcagcttcc ttactgacga
     2101 caaccaatca gcactcatct tccttgggtg gcttgagcca caatgaggag attccaaata
     2161 gtaccaccac acaacacagc agcacgttat ctactcagca gaataccctt tcgtcatcaa
     2221 catcttctgg gcgcacttcg acatccactc ttttgcacac aagcgtggag agtgaggcga
     2281 atcttcattc ttcctccagc actttctcca ccacatccag cacagtctct gcacctcccc
     2341 cagtggtcag tgtctcttcc agtctcaata gtggcagtag cttgggcctc agcctaggca
     2401 gcaactctac cgtcacagcc tccactcgaa gctcagttgc tacaacttca ggaaaagctc
     2461 ctcccaacct ccctcctggg gtcccgccgt tgttgcctaa tccatatatt atggctccag
     2521 ggctgttaca tgcctacccg ccacaagtat atggttatga tgacttgcag atgcttcaga
     2581 caagatttcc attggattac tacagcatcc catttcccac acccaccact ccgctgactg
     2641 ggagggatgg tagcctggcc agcaaccctt attctggtga cctcacaaag ttcggccgtg
     2701 gggatgcctc ctccccggcc ccggccacaa ccttggccca gccccagcag aaccagacac
     2761 agactcacca taccacgcag cagacattcc tgaacccggc gctgcctcct ggctacagtt
     2821 acaccagcct gccatactac acaggggttc cgggcctccc cagcaccttc cagtatgggc
     2881 ctgctgtgtt ccctgtggct cctacctctt ccaagcagca tggtgtgaat gtcagtgtga
     2941 atgcatcagc cacccctttc caacagccaa gtggatatgg gtctcatgga tacaacactg
     3001 gtgtatcagt cacctccagt aacacaggcg tgccagatat ctcgggttct gtgtactcca
     3061 aaacccagca gtcctttgag aaacaaggtt ttcattccgg tactcctgct gcctccttca
     3121 acttgccttc agccctagga agtggggggc ccatcaatcc ggccacagct gctgcctacc
     3181 cacctgcccc ctttatgcac attctgaccc cccatcagca accgcactcc cagatacttc
     3241 accatcacct gcagcaggat ggccagctac catatttgca gatgattctc tgttgccagc
     3301 gccagcagga ggagcagacg ggcagcgggc aacgtagcca gaccagctcc atcccgcaga
     3361 agccccagac caacaagtct gcctacaaca gctacagctg gggggccaac tgaggccctg
     3421 actctcttct cccggtccca tcttctgaga gggcttctca gcctggcaac tatggaaaca
     3481 gcatcaaaga gagaaaggaa tgtggggggg ttccactgcc cccaccccca gcggcccatc
     3541 ccatgcctca gcttcatgtc tgtcccattc ccataccatc cccactctgt tgtatgtatt
     3601 ataggatttg tattttctcc tttttttttt cttcctttcc tctcctcctc cccccttgca
     3661 ttcaagatta tgaaactttg ctgtgggccc tgccctccct tttcctcctc ctgttcaccc
     3721 tggtggtgtg tgggtgaggt agggaggggg gacccccaaa tatatatcag cccaacagcc
     3781 ctaagtctcc tcctttatta ttaggaaaca aaacaacaac aacaaaaaaa tggcgtcatg
     3841 aatatgaaca gcattgtcag atgaattagt tgaagtgttt tttttttttt tgtactgtgt
     3901 cctcaaattt aatggattaa tgtgtcttgt atatataaaa agaaaacctc taccttca
//
LOCUS       XM_032651418            3986 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X15, mRNA.
ACCESSION   XM_032651418
VERSION     XM_032651418.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3986
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3986
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3441
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X12"
                     /protein_id="XP_032507309.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKP
                     QTNKSAYNSYSWGAN"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3061 gtgccagata tctcgggttc tgtgtactcc aaaacccagt cctttgagaa acaaggtttt
     3121 cattccggta ctcctgctgc ctccttcaac ttgccttcag ccctaggaag tggggggccc
     3181 atcaatccgg ccacagctgc tgcctaccca cctgccccct ttatgcacat tctgaccccc
     3241 catcagcaac cgcactccca gatacttcac catcacctgc agcaggatgg ccagctacca
     3301 tatttgcaga tgattctctg ttgccagcgc cagcaggagg agcagacggg cagcgggcaa
     3361 cgtagccaga ccagctccat cccgcagaag ccccagacca acaagtctgc ctacaacagc
     3421 tacagctggg gggccaactg aggccctgac tctcttctcc cggtcccatc ttctgagagg
     3481 gcttctcagc ctggcaacta tggaaacagc atcaaagaga gaaaggaatg tgggggggtt
     3541 ccactgcccc cacccccagc ggcccatccc atgcctcagc ttcatgtctg tcccattccc
     3601 ataccatccc cactctgttg tatgtattat aggatttgta ttttctcctt ttttttttct
     3661 tcctttcctc tcctcctccc cccttgcatt caagattatg aaactttgct gtgggccctg
     3721 ccctcccttt tcctcctcct gttcaccctg gtggtgtgtg ggtgaggtag ggagggggga
     3781 cccccaaata tatatcagcc caacagccct aagtctcctc ctttattatt aggaaacaaa
     3841 acaacaacaa caaaaaaatg gcgtcatgaa tatgaacagc attgtcagat gaattagttg
     3901 aagtgttttt tttttttttg tactgtgtcc tcaaatttaa tggattaatg tgtcttgtat
     3961 atataaaaag aaaacctcta ccttca
//
LOCUS       XM_032651429            3955 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X16, mRNA.
ACCESSION   XM_032651429
VERSION     XM_032651429.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3955
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3955
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             99..3410
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X12"
                     /protein_id="XP_032507320.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKP
                     QTNKSAYNSYSWGAN"
     misc_feature    246..359
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1584..1667
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg agactgagta
       61 ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg gtgggcacta
      121 accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag cacaagcagc
      181 ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac cataatgatg
      241 ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac caggatgaat
      301 gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat gtactgctgg
      361 aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga gtctcaggac
      421 agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga gaccgggaca
      481 gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc agccgcggac
      541 gagagtttcg aggtcaggaa aatggattag atggcaccaa gagtggaggg ccttctggaa
      601 gaggcacaga aagaggcaga agaggtcgtg gccgaggcag aggtggctct ggtaggcggg
      661 gaggaaggtt ttctgctcaa ggaatgggaa cctttaaccc agctgattat gcagagccgg
      721 ccaatactga tgataactat ggcaataata gcggcaatac atggaacaac actggccact
      781 ttgaaccaga tgatgggacg agtgcatgga ggactgcaac agaggagtgg ggaactgaag
      841 attggaatga agatctttct gagaccaaga tcttcactgc ctctaatgtg tcgtcagtgc
      901 ctctgcctgc ggagaatgtg acaatcactg ctggtcagag aattgacctt gctgttctgt
      961 tggggaagac accatcttca atggagaatg attcatctaa tctggatcca tctcaggctc
     1021 cttctcttgc ccagcctctg gtgttcagta actcgaagca gagtgccata tcacagcctg
     1081 cttcagggaa cacgttttct catcacagta tggtgagcat gttagggaaa ggatttggtg
     1141 atgtcggtga agctaaaggc agcagcacca caggctccca gttcttggag caattcaaga
     1201 ctgctcaggc cctggctcag ttggcagctc agcattctca atctggaacc accaccacct
     1261 cctcttggga catgggctcc accacacaat ccccatcgct ggtgcagtat gatttgaaga
     1321 acccaaatga ttcaacagtg cacagcccct ttacaaagcg ccaggctttc acctcatctt
     1381 caaccatgat ggaggtgttc cttcaggaga agccacctgc agtggctacc tccactgctg
     1441 cacctccacc cccatcttct cctctgccaa gcaaatccac ctcggctcca caaatgtctc
     1501 ctgggtcttc agacaaccaa tcgtccagcc ctcagccggc tcagcaaaaa ctgaaacagc
     1561 agaagaaaaa agcctccttg acttctaaga ttcctgctct ggctgtggag atgcctggct
     1621 cggcagatat ctcagggcta aatctgcagt ttggggcgtt gcagtttggg tcagagcctg
     1681 tcctttctga ttatgagtcc acccccacca cgagcgcctc ttcaagccag gctccaagta
     1741 gcctctatac cagcacggcc agtgaatctt catccacaat ttcatctaac cagagtcagg
     1801 agtctggtta tcagagtggc ccaattcagt cgacaaccta tacctcccaa aataatgctc
     1861 agggccctct atatgaacag agatccacac agactcggcg gtaccccagc tccatctctt
     1921 catcacccca aaaggacttg actcaggcaa agaatggctt cagttctgtg caggccacgc
     1981 agttacagac cacgcaatct gttgaaggtg ctacaggctc tgcagtgaaa tctgactcac
     2041 cttccacttc tagcatcccc cctctcagtg aaacggtatc tgcagcttcc ttactgacga
     2101 caaccaatca gcactcatct tccttgggtg gcttgagcca caatgaggag attccaaata
     2161 gtaccaccac acaacacagc agcacgttat ctactcagca gaataccctt tcgtcatcaa
     2221 catcttctgg gcgcacttcg acatccactc ttttgcacac aagcgtggag agtgaggcga
     2281 atcttcattc ttcctccagc actttctcca ccacatccag cacagtctct gcacctcccc
     2341 cagtggtcag tgtctcttcc agtctcaata gtggcagtag cttgggcctc agcctaggca
     2401 gcaactctac cgtcacagcc tccactcgaa gctcagttgc tacaacttca ggaaaagctc
     2461 ctcccaacct ccctcctggg gtcccgccgt tgttgcctaa tccatatatt atggctccag
     2521 ggctgttaca tgcctacccg ccacaagtat atggttatga tgacttgcag atgcttcaga
     2581 caagatttcc attggattac tacagcatcc catttcccac acccaccact ccgctgactg
     2641 ggagggatgg tagcctggcc agcaaccctt attctggtga cctcacaaag ttcggccgtg
     2701 gggatgcctc ctccccggcc ccggccacaa ccttggccca gccccagcag aaccagacac
     2761 agactcacca taccacgcag cagacattcc tgaacccggc gctgcctcct ggctacagtt
     2821 acaccagcct gccatactac acaggggttc cgggcctccc cagcaccttc cagtatgggc
     2881 ctgctgtgtt ccctgtggct cctacctctt ccaagcagca tggtgtgaat gtcagtgtga
     2941 atgcatcagc cacccctttc caacagccaa gtggatatgg gtctcatgga tacaacactg
     3001 gtgtatcagt cacctccagt aacacaggcg tgccagatat ctcgggttct gtgtactcca
     3061 aaacccagtc ctttgagaaa caaggttttc attccggtac tcctgctgcc tccttcaact
     3121 tgccttcagc cctaggaagt ggggggccca tcaatccggc cacagctgct gcctacccac
     3181 ctgccccctt tatgcacatt ctgacccccc atcagcaacc gcactcccag atacttcacc
     3241 atcacctgca gcaggatggc cagctaccat atttgcagat gattctctgt tgccagcgcc
     3301 agcaggagga gcagacgggc agcgggcaac gtagccagac cagctccatc ccgcagaagc
     3361 cccagaccaa caagtctgcc tacaacagct acagctgggg ggccaactga ggccctgact
     3421 ctcttctccc ggtcccatct tctgagaggg cttctcagcc tggcaactat ggaaacagca
     3481 tcaaagagag aaaggaatgt gggggggttc cactgccccc acccccagcg gcccatccca
     3541 tgcctcagct tcatgtctgt cccattccca taccatcccc actctgttgt atgtattata
     3601 ggatttgtat tttctccttt tttttttctt cctttcctct cctcctcccc ccttgcattc
     3661 aagattatga aactttgctg tgggccctgc cctccctttt cctcctcctg ttcaccctgg
     3721 tggtgtgtgg gtgaggtagg gaggggggac ccccaaatat atatcagccc aacagcccta
     3781 agtctcctcc tttattatta ggaaacaaaa caacaacaac aaaaaaatgg cgtcatgaat
     3841 atgaacagca ttgtcagatg aattagttga agtgtttttt ttttttttgt actgtgtcct
     3901 caaatttaat ggattaatgt gtcttgtata tataaaaaga aaacctctac cttca
//
LOCUS       XM_032651440            3887 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X17, mRNA.
ACCESSION   XM_032651440
VERSION     XM_032651440.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3887
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3426
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X13"
                     /protein_id="XP_032507331.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWG
                     TEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLD
                     PSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQ
                     FLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFT
                     KRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSS
                     PQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
                     PTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYE
                     QRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTS
                     SIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTS
                     SGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLG
                     SNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQM
                     LQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQ
                     QNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQH
                     GVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFH
                     SGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQD
                     ILSLVDDQLDE"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1705..1788
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagacttgat ttcattgggg ttgaggggtc aaattatccc
      901 cgaaaatttg agactgctcc tggtgcatgg aggactgcaa cagaggagtg gggaactgaa
      961 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
     1021 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1081 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1141 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1201 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1261 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1321 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1381 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1441 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1501 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1561 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1621 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1681 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1741 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1801 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1861 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1921 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1981 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     2041 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2101 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2161 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2221 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2281 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2341 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2401 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2461 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2521 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2581 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2641 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2701 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2761 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2821 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2881 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2941 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     3001 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3061 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3121 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3181 aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc tgcctccttc
     3241 aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc tgctgcctac
     3301 ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc ccagatactt
     3361 caccatcacc tgcagcagga tggccaggat atcctcagtc tcgtcgatga ccagcttgat
     3421 gaataagtat tactgtacca actgggcctt ctctagcagg ccccgaaggc agtggaataa
     3481 aatgaaatct tcgcccttta agaactcctc tgaccttaat gtgctagtat cttgcccttg
     3541 agggcattcc cttccccctc tcccctaaga attacacagc gtggtgcctg gaaagaatca
     3601 ctgcaaatct tcatttcctc cagatctaca gcagatttta ggcaatgaag ggatagcaga
     3661 tattgggtgg aaagggaaag ggttaagcag gagttgaaag aaatggcttt gtagaatcaa
     3721 agtgtaattt agatggatcc aggcaaatga actggaaaga aatgagggca acatgcactg
     3781 ttggctagca aaactgaagc agtagttctt acttcttgag tgctttcact tcaagtagct
     3841 aatatccaac cccttgaaaa ggagtctaga gcaaggccag ggttggg
//
LOCUS       XM_032651450            3968 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X18, mRNA.
ACCESSION   XM_032651450
VERSION     XM_032651450.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3968
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3968
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3423
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X14"
                     /protein_id="XP_032507341.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPI
                     NPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKS
                     AYNSYSWGAN"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1645..1728
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagtgcatgg aggactgcaa cagaggagtg gggaactgaa
      901 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
      961 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1021 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1081 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1141 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1201 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1261 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1321 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1381 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1441 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1501 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1561 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1621 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1681 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1741 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1801 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1861 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1921 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     1981 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2041 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2101 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2161 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2221 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2281 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2341 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2401 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2461 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2521 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2581 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2641 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2701 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2761 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2821 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2881 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     2941 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3001 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3061 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3121 aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc tgcctccttc
     3181 aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc tgctgcctac
     3241 ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc ccagatactt
     3301 caccatcacc tgcagcagga tggccagacg ggcagcgggc aacgtagcca gaccagctcc
     3361 atcccgcaga agccccagac caacaagtct gcctacaaca gctacagctg gggggccaac
     3421 tgaggccctg actctcttct cccggtccca tcttctgaga gggcttctca gcctggcaac
     3481 tatggaaaca gcatcaaaga gagaaaggaa tgtggggggg ttccactgcc cccaccccca
     3541 gcggcccatc ccatgcctca gcttcatgtc tgtcccattc ccataccatc cccactctgt
     3601 tgtatgtatt ataggatttg tattttctcc tttttttttt cttcctttcc tctcctcctc
     3661 cccccttgca ttcaagatta tgaaactttg ctgtgggccc tgccctccct tttcctcctc
     3721 ctgttcaccc tggtggtgtg tgggtgaggt agggaggggg gacccccaaa tatatatcag
     3781 cccaacagcc ctaagtctcc tcctttatta ttaggaaaca aaacaacaac aacaaaaaaa
     3841 tggcgtcatg aatatgaaca gcattgtcag atgaattagt tgaagtgttt tttttttttt
     3901 tgtactgtgt cctcaaattt aatggattaa tgtgtcttgt atatataaaa agaaaacctc
     3961 taccttca
//
LOCUS       XM_032651456            3884 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X19, mRNA.
ACCESSION   XM_032651456
VERSION     XM_032651456.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3884
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3884
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3423
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X15"
                     /protein_id="XP_032507347.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWG
                     TEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLD
                     PSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQ
                     FLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFT
                     KRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSS
                     PQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
                     PTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYE
                     QRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTS
                     SIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTS
                     SGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLG
                     SNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQM
                     LQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQ
                     QNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQH
                     GVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHS
                     GTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDI
                     LSLVDDQLDE"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1705..1788
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagacttgat ttcattgggg ttgaggggtc aaattatccc
      901 cgaaaatttg agactgctcc tggtgcatgg aggactgcaa cagaggagtg gggaactgaa
      961 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
     1021 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1081 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1141 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1201 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1261 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1321 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1381 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1441 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1501 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1561 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1621 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1681 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1741 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1801 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1861 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1921 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1981 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     2041 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2101 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2161 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2221 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2281 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2341 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2401 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2461 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2521 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2581 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2641 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2701 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2761 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2821 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2881 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2941 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     3001 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3061 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3121 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3181 aaaacccagt cctttgagaa acaaggtttt cattccggta ctcctgctgc ctccttcaac
     3241 ttgccttcag ccctaggaag tggggggccc atcaatccgg ccacagctgc tgcctaccca
     3301 cctgccccct ttatgcacat tctgaccccc catcagcaac cgcactccca gatacttcac
     3361 catcacctgc agcaggatgg ccaggatatc ctcagtctcg tcgatgacca gcttgatgaa
     3421 taagtattac tgtaccaact gggccttctc tagcaggccc cgaaggcagt ggaataaaat
     3481 gaaatcttcg ccctttaaga actcctctga ccttaatgtg ctagtatctt gcccttgagg
     3541 gcattccctt ccccctctcc cctaagaatt acacagcgtg gtgcctggaa agaatcactg
     3601 caaatcttca tttcctccag atctacagca gattttaggc aatgaaggga tagcagatat
     3661 tgggtggaaa gggaaagggt taagcaggag ttgaaagaaa tggctttgta gaatcaaagt
     3721 gtaatttaga tggatccagg caaatgaact ggaaagaaat gagggcaaca tgcactgttg
     3781 gctagcaaaa ctgaagcagt agttcttact tcttgagtgc tttcacttca agtagctaat
     3841 atccaacccc ttgaaaagga gtctagagca aggccagggt tggg
//
LOCUS       XM_032651462            3965 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X20, mRNA.
ACCESSION   XM_032651462
VERSION     XM_032651462.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3965
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3420
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X16"
                     /protein_id="XP_032507353.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPIN
                     PATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSA
                     YNSYSWGAN"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1645..1728
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagtgcatgg aggactgcaa cagaggagtg gggaactgaa
      901 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
      961 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1021 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1081 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1141 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1201 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1261 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1321 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1381 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1441 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1501 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1561 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1621 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1681 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1741 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1801 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1861 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1921 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     1981 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2041 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2101 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2161 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2221 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2281 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2341 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2401 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2461 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2521 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2581 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2641 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2701 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2761 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2821 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2881 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     2941 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3001 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3061 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3121 aaaacccagt cctttgagaa acaaggtttt cattccggta ctcctgctgc ctccttcaac
     3181 ttgccttcag ccctaggaag tggggggccc atcaatccgg ccacagctgc tgcctaccca
     3241 cctgccccct ttatgcacat tctgaccccc catcagcaac cgcactccca gatacttcac
     3301 catcacctgc agcaggatgg ccagacgggc agcgggcaac gtagccagac cagctccatc
     3361 ccgcagaagc cccagaccaa caagtctgcc tacaacagct acagctgggg ggccaactga
     3421 ggccctgact ctcttctccc ggtcccatct tctgagaggg cttctcagcc tggcaactat
     3481 ggaaacagca tcaaagagag aaaggaatgt gggggggttc cactgccccc acccccagcg
     3541 gcccatccca tgcctcagct tcatgtctgt cccattccca taccatcccc actctgttgt
     3601 atgtattata ggatttgtat tttctccttt tttttttctt cctttcctct cctcctcccc
     3661 ccttgcattc aagattatga aactttgctg tgggccctgc cctccctttt cctcctcctg
     3721 ttcaccctgg tggtgtgtgg gtgaggtagg gaggggggac ccccaaatat atatcagccc
     3781 aacagcccta agtctcctcc tttattatta ggaaacaaaa caacaacaac aaaaaaatgg
     3841 cgtcatgaat atgaacagca ttgtcagatg aattagttga agtgtttttt ttttttttgt
     3901 actgtgtcct caaatttaat ggattaatgt gtcttgtata tataaaaaga aaacctctac
     3961 cttca
//
LOCUS       XM_032651466            3937 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X21, mRNA.
ACCESSION   XM_032651466
VERSION     XM_032651466.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3937
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3937
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             99..3392
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X16"
                     /protein_id="XP_032507357.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPIN
                     PATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSA
                     YNSYSWGAN"
     misc_feature    246..359
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1617..1700
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg agactgagta
       61 ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg gtgggcacta
      121 accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag cacaagcagc
      181 ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac cataatgatg
      241 ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac caggatgaat
      301 gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat gtactgctgg
      361 aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga gtctcaggac
      421 agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga gaccgggaca
      481 gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc agccgcggac
      541 gagagtgtat gcatggggct ttaacaaaac tagttgtggt tcgaggtcag gaaaatggat
      601 tagatggcac caagagtgga gggccttctg gaagaggcac agaaagaggc agaagaggtc
      661 gtggccgagg cagaggtggc tctggtaggc ggggaggaag gttttctgct caaggaatgg
      721 gaacctttaa cccagctgat tatgcagagc cggccaatac tgatgataac tatggcaata
      781 atagcggcaa tacatggaac aacactggcc actttgaacc agatgatggg acgagtgcat
      841 ggaggactgc aacagaggag tggggaactg aagattggaa tgaagatctt tctgagacca
      901 agatcttcac tgcctctaat gtgtcgtcag tgcctctgcc tgcggagaat gtgacaatca
      961 ctgctggtca gagaattgac cttgctgttc tgttggggaa gacaccatct tcaatggaga
     1021 atgattcatc taatctggat ccatctcagg ctccttctct tgcccagcct ctggtgttca
     1081 gtaactcgaa gcagagtgcc atatcacagc ctgcttcagg gaacacgttt tctcatcaca
     1141 gtatggtgag catgttaggg aaaggatttg gtgatgtcgg tgaagctaaa ggcagcagca
     1201 ccacaggctc ccagttcttg gagcaattca agactgctca ggccctggct cagttggcag
     1261 ctcagcattc tcaatctgga accaccacca cctcctcttg ggacatgggc tccaccacac
     1321 aatccccatc gctggtgcag tatgatttga agaacccaaa tgattcaaca gtgcacagcc
     1381 cctttacaaa gcgccaggct ttcacctcat cttcaaccat gatggaggtg ttccttcagg
     1441 agaagccacc tgcagtggct acctccactg ctgcacctcc acccccatct tctcctctgc
     1501 caagcaaatc cacctcggct ccacaaatgt ctcctgggtc ttcagacaac caatcgtcca
     1561 gccctcagcc ggctcagcaa aaactgaaac agcagaagaa aaaagcctcc ttgacttcta
     1621 agattcctgc tctggctgtg gagatgcctg gctcggcaga tatctcaggg ctaaatctgc
     1681 agtttggggc gttgcagttt gggtcagagc ctgtcctttc tgattatgag tccaccccca
     1741 ccacgagcgc ctcttcaagc caggctccaa gtagcctcta taccagcacg gccagtgaat
     1801 cttcatccac aatttcatct aaccagagtc aggagtctgg ttatcagagt ggcccaattc
     1861 agtcgacaac ctatacctcc caaaataatg ctcagggccc tctatatgaa cagagatcca
     1921 cacagactcg gcggtacccc agctccatct cttcatcacc ccaaaaggac ttgactcagg
     1981 caaagaatgg cttcagttct gtgcaggcca cgcagttaca gaccacgcaa tctgttgaag
     2041 gtgctacagg ctctgcagtg aaatctgact caccttccac ttctagcatc ccccctctca
     2101 gtgaaacggt atctgcagct tccttactga cgacaaccaa tcagcactca tcttccttgg
     2161 gtggcttgag ccacaatgag gagattccaa atagtaccac cacacaacac agcagcacgt
     2221 tatctactca gcagaatacc ctttcgtcat caacatcttc tgggcgcact tcgacatcca
     2281 ctcttttgca cacaagcgtg gagagtgagg cgaatcttca ttcttcctcc agcactttct
     2341 ccaccacatc cagcacagtc tctgcacctc ccccagtggt cagtgtctct tccagtctca
     2401 atagtggcag tagcttgggc ctcagcctag gcagcaactc taccgtcaca gcctccactc
     2461 gaagctcagt tgctacaact tcaggaaaag ctcctcccaa cctccctcct ggggtcccgc
     2521 cgttgttgcc taatccatat attatggctc cagggctgtt acatgcctac ccgccacaag
     2581 tatatggtta tgatgacttg cagatgcttc agacaagatt tccattggat tactacagca
     2641 tcccatttcc cacacccacc actccgctga ctgggaggga tggtagcctg gccagcaacc
     2701 cttattctgg tgacctcaca aagttcggcc gtggggatgc ctcctccccg gccccggcca
     2761 caaccttggc ccagccccag cagaaccaga cacagactca ccataccacg cagcagacat
     2821 tcctgaaccc ggcgctgcct cctggctaca gttacaccag cctgccatac tacacagggg
     2881 ttccgggcct ccccagcacc ttccagtatg ggcctgctgt gttccctgtg gctcctacct
     2941 cttccaagca gcatggtgtg aatgtcagtg tgaatgcatc agccacccct ttccaacagc
     3001 caagtggata tgggtctcat ggatacaaca ctggtgtatc agtcacctcc agtaacacag
     3061 gcgtgccaga tatctcgggt tctgtgtact ccaaaaccca gtcctttgag aaacaaggtt
     3121 ttcattccgg tactcctgct gcctccttca acttgccttc agccctagga agtggggggc
     3181 ccatcaatcc ggccacagct gctgcctacc cacctgcccc ctttatgcac attctgaccc
     3241 cccatcagca accgcactcc cagatacttc accatcacct gcagcaggat ggccagacgg
     3301 gcagcgggca acgtagccag accagctcca tcccgcagaa gccccagacc aacaagtctg
     3361 cctacaacag ctacagctgg ggggccaact gaggccctga ctctcttctc ccggtcccat
     3421 cttctgagag ggcttctcag cctggcaact atggaaacag catcaaagag agaaaggaat
     3481 gtgggggggt tccactgccc ccacccccag cggcccatcc catgcctcag cttcatgtct
     3541 gtcccattcc cataccatcc ccactctgtt gtatgtatta taggatttgt attttctcct
     3601 tttttttttc ttcctttcct ctcctcctcc ccccttgcat tcaagattat gaaactttgc
     3661 tgtgggccct gccctccctt ttcctcctcc tgttcaccct ggtggtgtgt gggtgaggta
     3721 gggagggggg acccccaaat atatatcagc ccaacagccc taagtctcct cctttattat
     3781 taggaaacaa aacaacaaca acaaaaaaat ggcgtcatga atatgaacag cattgtcaga
     3841 tgaattagtt gaagtgtttt tttttttttt gtactgtgtc ctcaaattta atggattaat
     3901 gtgtcttgta tatataaaaa gaaaacctct accttca
//
LOCUS       XM_032651471            3938 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X22, mRNA.
ACCESSION   XM_032651471
VERSION     XM_032651471.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3938
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3393
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X17"
                     /protein_id="XP_032507362.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3061 gtgccagata tctcgggttc tgtgtactcc aaaacccagc agtcctttga gaaacaaggt
     3121 tttcattccg gtactcctgc tgcctccttc aacttgcctt cagccctagg aagtgggggg
     3181 cccatcaatc cggccacagc tgctgcctac ccacctgccc cctttatgca cattctgacc
     3241 ccccatcagc aaccgcactc ccagatactt caccatcacc tgcagcagga tggccagacg
     3301 ggcagcgggc aacgtagcca gaccagctcc atcccgcaga agccccagac caacaagtct
     3361 gcctacaaca gctacagctg gggggccaac tgaggccctg actctcttct cccggtccca
     3421 tcttctgaga gggcttctca gcctggcaac tatggaaaca gcatcaaaga gagaaaggaa
     3481 tgtggggggg ttccactgcc cccaccccca gcggcccatc ccatgcctca gcttcatgtc
     3541 tgtcccattc ccataccatc cccactctgt tgtatgtatt ataggatttg tattttctcc
     3601 tttttttttt cttcctttcc tctcctcctc cccccttgca ttcaagatta tgaaactttg
     3661 ctgtgggccc tgccctccct tttcctcctc ctgttcaccc tggtggtgtg tgggtgaggt
     3721 agggaggggg gacccccaaa tatatatcag cccaacagcc ctaagtctcc tcctttatta
     3781 ttaggaaaca aaacaacaac aacaaaaaaa tggcgtcatg aatatgaaca gcattgtcag
     3841 atgaattagt tgaagtgttt tttttttttt tgtactgtgt cctcaaattt aatggattaa
     3901 tgtgtcttgt atatataaaa agaaaacctc taccttca
//
LOCUS       XM_032651479            3907 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X23, mRNA.
ACCESSION   XM_032651479
VERSION     XM_032651479.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3907
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3907
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             99..3362
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X17"
                     /protein_id="XP_032507370.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    246..359
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1584..1667
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg agactgagta
       61 ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg gtgggcacta
      121 accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag cacaagcagc
      181 ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac cataatgatg
      241 ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac caggatgaat
      301 gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat gtactgctgg
      361 aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga gtctcaggac
      421 agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga gaccgggaca
      481 gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc agccgcggac
      541 gagagtttcg aggtcaggaa aatggattag atggcaccaa gagtggaggg ccttctggaa
      601 gaggcacaga aagaggcaga agaggtcgtg gccgaggcag aggtggctct ggtaggcggg
      661 gaggaaggtt ttctgctcaa ggaatgggaa cctttaaccc agctgattat gcagagccgg
      721 ccaatactga tgataactat ggcaataata gcggcaatac atggaacaac actggccact
      781 ttgaaccaga tgatgggacg agtgcatgga ggactgcaac agaggagtgg ggaactgaag
      841 attggaatga agatctttct gagaccaaga tcttcactgc ctctaatgtg tcgtcagtgc
      901 ctctgcctgc ggagaatgtg acaatcactg ctggtcagag aattgacctt gctgttctgt
      961 tggggaagac accatcttca atggagaatg attcatctaa tctggatcca tctcaggctc
     1021 cttctcttgc ccagcctctg gtgttcagta actcgaagca gagtgccata tcacagcctg
     1081 cttcagggaa cacgttttct catcacagta tggtgagcat gttagggaaa ggatttggtg
     1141 atgtcggtga agctaaaggc agcagcacca caggctccca gttcttggag caattcaaga
     1201 ctgctcaggc cctggctcag ttggcagctc agcattctca atctggaacc accaccacct
     1261 cctcttggga catgggctcc accacacaat ccccatcgct ggtgcagtat gatttgaaga
     1321 acccaaatga ttcaacagtg cacagcccct ttacaaagcg ccaggctttc acctcatctt
     1381 caaccatgat ggaggtgttc cttcaggaga agccacctgc agtggctacc tccactgctg
     1441 cacctccacc cccatcttct cctctgccaa gcaaatccac ctcggctcca caaatgtctc
     1501 ctgggtcttc agacaaccaa tcgtccagcc ctcagccggc tcagcaaaaa ctgaaacagc
     1561 agaagaaaaa agcctccttg acttctaaga ttcctgctct ggctgtggag atgcctggct
     1621 cggcagatat ctcagggcta aatctgcagt ttggggcgtt gcagtttggg tcagagcctg
     1681 tcctttctga ttatgagtcc acccccacca cgagcgcctc ttcaagccag gctccaagta
     1741 gcctctatac cagcacggcc agtgaatctt catccacaat ttcatctaac cagagtcagg
     1801 agtctggtta tcagagtggc ccaattcagt cgacaaccta tacctcccaa aataatgctc
     1861 agggccctct atatgaacag agatccacac agactcggcg gtaccccagc tccatctctt
     1921 catcacccca aaaggacttg actcaggcaa agaatggctt cagttctgtg caggccacgc
     1981 agttacagac cacgcaatct gttgaaggtg ctacaggctc tgcagtgaaa tctgactcac
     2041 cttccacttc tagcatcccc cctctcagtg aaacggtatc tgcagcttcc ttactgacga
     2101 caaccaatca gcactcatct tccttgggtg gcttgagcca caatgaggag attccaaata
     2161 gtaccaccac acaacacagc agcacgttat ctactcagca gaataccctt tcgtcatcaa
     2221 catcttctgg gcgcacttcg acatccactc ttttgcacac aagcgtggag agtgaggcga
     2281 atcttcattc ttcctccagc actttctcca ccacatccag cacagtctct gcacctcccc
     2341 cagtggtcag tgtctcttcc agtctcaata gtggcagtag cttgggcctc agcctaggca
     2401 gcaactctac cgtcacagcc tccactcgaa gctcagttgc tacaacttca ggaaaagctc
     2461 ctcccaacct ccctcctggg gtcccgccgt tgttgcctaa tccatatatt atggctccag
     2521 ggctgttaca tgcctacccg ccacaagtat atggttatga tgacttgcag atgcttcaga
     2581 caagatttcc attggattac tacagcatcc catttcccac acccaccact ccgctgactg
     2641 ggagggatgg tagcctggcc agcaaccctt attctggtga cctcacaaag ttcggccgtg
     2701 gggatgcctc ctccccggcc ccggccacaa ccttggccca gccccagcag aaccagacac
     2761 agactcacca taccacgcag cagacattcc tgaacccggc gctgcctcct ggctacagtt
     2821 acaccagcct gccatactac acaggggttc cgggcctccc cagcaccttc cagtatgggc
     2881 ctgctgtgtt ccctgtggct cctacctctt ccaagcagca tggtgtgaat gtcagtgtga
     2941 atgcatcagc cacccctttc caacagccaa gtggatatgg gtctcatgga tacaacactg
     3001 gtgtatcagt cacctccagt aacacaggcg tgccagatat ctcgggttct gtgtactcca
     3061 aaacccagca gtcctttgag aaacaaggtt ttcattccgg tactcctgct gcctccttca
     3121 acttgccttc agccctagga agtggggggc ccatcaatcc ggccacagct gctgcctacc
     3181 cacctgcccc ctttatgcac attctgaccc cccatcagca accgcactcc cagatacttc
     3241 accatcacct gcagcaggat ggccagacgg gcagcgggca acgtagccag accagctcca
     3301 tcccgcagaa gccccagacc aacaagtctg cctacaacag ctacagctgg ggggccaact
     3361 gaggccctga ctctcttctc ccggtcccat cttctgagag ggcttctcag cctggcaact
     3421 atggaaacag catcaaagag agaaaggaat gtgggggggt tccactgccc ccacccccag
     3481 cggcccatcc catgcctcag cttcatgtct gtcccattcc cataccatcc ccactctgtt
     3541 gtatgtatta taggatttgt attttctcct tttttttttc ttcctttcct ctcctcctcc
     3601 ccccttgcat tcaagattat gaaactttgc tgtgggccct gccctccctt ttcctcctcc
     3661 tgttcaccct ggtggtgtgt gggtgaggta gggagggggg acccccaaat atatatcagc
     3721 ccaacagccc taagtctcct cctttattat taggaaacaa aacaacaaca acaaaaaaat
     3781 ggcgtcatga atatgaacag cattgtcaga tgaattagtt gaagtgtttt tttttttttt
     3841 gtactgtgtc ctcaaattta atggattaat gtgtcttgta tatataaaaa gaaaacctct
     3901 accttca
//
LOCUS       XM_032651486            3941 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X24, mRNA.
ACCESSION   XM_032651486
VERSION     XM_032651486.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3941
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3941
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             133..3396
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X17"
                     /protein_id="XP_032507377.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    280..393
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1618..1701
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gcagccgtag tggggggggc catgcggcta gagcctgaga cgggggagag cgagaaagag
       61 cgcgagcgag ctaggcctgg gccccgcctg agtattctac cttgtaaata ctgttatttg
      121 tatatactgt aaatgatgac gtcggtgggc actaaccgag cccggggaaa ctgggaacca
      181 cctcaaaacc aaaatcagac acagcacaag cagcggcccc aggccactgc ggaacaaatt
      241 cgacttgcac agatgatttc ggaccataat gatgctgact ttgaggaaaa ggtgaaacaa
      301 ttgattgata tcacaggcaa gaaccaggat gaatgtgtca ttgctttgca tgactgcaac
      361 ggagatgtca acagagccat caatgtactg ctggaaggaa acccagatac gcattcctgg
      421 gagatggttg ggaagaagaa aggagtctca ggacagaagg acagtggcca aacggaatcc
      481 aacgaggaag gcaaagaaaa tcgagaccgg gacagagact atagtcggcg acgtggtggg
      541 ccaccaagac gggggagagg tgccagccgc ggacgagagt ttcgaggtca ggaaaatgga
      601 ttagatggca ccaagagtgg agggccttct ggaagaggca cagaaagagg cagaagaggt
      661 cgtggccgag gcagaggtgg ctctggtagg cggggaggaa ggttttctgc tcaaggaatg
      721 ggaaccttta acccagctga ttatgcagag ccggccaata ctgatgataa ctatggcaat
      781 aatagcggca atacatggaa caacactggc cactttgaac cagatgatgg gacgagtgca
      841 tggaggactg caacagagga gtggggaact gaagattgga atgaagatct ttctgagacc
      901 aagatcttca ctgcctctaa tgtgtcgtca gtgcctctgc ctgcggagaa tgtgacaatc
      961 actgctggtc agagaattga ccttgctgtt ctgttgggga agacaccatc ttcaatggag
     1021 aatgattcat ctaatctgga tccatctcag gctccttctc ttgcccagcc tctggtgttc
     1081 agtaactcga agcagagtgc catatcacag cctgcttcag ggaacacgtt ttctcatcac
     1141 agtatggtga gcatgttagg gaaaggattt ggtgatgtcg gtgaagctaa aggcagcagc
     1201 accacaggct cccagttctt ggagcaattc aagactgctc aggccctggc tcagttggca
     1261 gctcagcatt ctcaatctgg aaccaccacc acctcctctt gggacatggg ctccaccaca
     1321 caatccccat cgctggtgca gtatgatttg aagaacccaa atgattcaac agtgcacagc
     1381 ccctttacaa agcgccaggc tttcacctca tcttcaacca tgatggaggt gttccttcag
     1441 gagaagccac ctgcagtggc tacctccact gctgcacctc cacccccatc ttctcctctg
     1501 ccaagcaaat ccacctcggc tccacaaatg tctcctgggt cttcagacaa ccaatcgtcc
     1561 agccctcagc cggctcagca aaaactgaaa cagcagaaga aaaaagcctc cttgacttct
     1621 aagattcctg ctctggctgt ggagatgcct ggctcggcag atatctcagg gctaaatctg
     1681 cagtttgggg cgttgcagtt tgggtcagag cctgtccttt ctgattatga gtccaccccc
     1741 accacgagcg cctcttcaag ccaggctcca agtagcctct ataccagcac ggccagtgaa
     1801 tcttcatcca caatttcatc taaccagagt caggagtctg gttatcagag tggcccaatt
     1861 cagtcgacaa cctatacctc ccaaaataat gctcagggcc ctctatatga acagagatcc
     1921 acacagactc ggcggtaccc cagctccatc tcttcatcac cccaaaagga cttgactcag
     1981 gcaaagaatg gcttcagttc tgtgcaggcc acgcagttac agaccacgca atctgttgaa
     2041 ggtgctacag gctctgcagt gaaatctgac tcaccttcca cttctagcat cccccctctc
     2101 agtgaaacgg tatctgcagc ttccttactg acgacaacca atcagcactc atcttccttg
     2161 ggtggcttga gccacaatga ggagattcca aatagtacca ccacacaaca cagcagcacg
     2221 ttatctactc agcagaatac cctttcgtca tcaacatctt ctgggcgcac ttcgacatcc
     2281 actcttttgc acacaagcgt ggagagtgag gcgaatcttc attcttcctc cagcactttc
     2341 tccaccacat ccagcacagt ctctgcacct cccccagtgg tcagtgtctc ttccagtctc
     2401 aatagtggca gtagcttggg cctcagccta ggcagcaact ctaccgtcac agcctccact
     2461 cgaagctcag ttgctacaac ttcaggaaaa gctcctccca acctccctcc tggggtcccg
     2521 ccgttgttgc ctaatccata tattatggct ccagggctgt tacatgccta cccgccacaa
     2581 gtatatggtt atgatgactt gcagatgctt cagacaagat ttccattgga ttactacagc
     2641 atcccatttc ccacacccac cactccgctg actgggaggg atggtagcct ggccagcaac
     2701 ccttattctg gtgacctcac aaagttcggc cgtggggatg cctcctcccc ggccccggcc
     2761 acaaccttgg cccagcccca gcagaaccag acacagactc accataccac gcagcagaca
     2821 ttcctgaacc cggcgctgcc tcctggctac agttacacca gcctgccata ctacacaggg
     2881 gttccgggcc tccccagcac cttccagtat gggcctgctg tgttccctgt ggctcctacc
     2941 tcttccaagc agcatggtgt gaatgtcagt gtgaatgcat cagccacccc tttccaacag
     3001 ccaagtggat atgggtctca tggatacaac actggtgtat cagtcacctc cagtaacaca
     3061 ggcgtgccag atatctcggg ttctgtgtac tccaaaaccc agcagtcctt tgagaaacaa
     3121 ggttttcatt ccggtactcc tgctgcctcc ttcaacttgc cttcagccct aggaagtggg
     3181 gggcccatca atccggccac agctgctgcc tacccacctg ccccctttat gcacattctg
     3241 accccccatc agcaaccgca ctcccagata cttcaccatc acctgcagca ggatggccag
     3301 acgggcagcg ggcaacgtag ccagaccagc tccatcccgc agaagcccca gaccaacaag
     3361 tctgcctaca acagctacag ctggggggcc aactgaggcc ctgactctct tctcccggtc
     3421 ccatcttctg agagggcttc tcagcctggc aactatggaa acagcatcaa agagagaaag
     3481 gaatgtgggg gggttccact gcccccaccc ccagcggccc atcccatgcc tcagcttcat
     3541 gtctgtccca ttcccatacc atccccactc tgttgtatgt attataggat ttgtattttc
     3601 tccttttttt tttcttcctt tcctctcctc ctcccccctt gcattcaaga ttatgaaact
     3661 ttgctgtggg ccctgccctc ccttttcctc ctcctgttca ccctggtggt gtgtgggtga
     3721 ggtagggagg ggggaccccc aaatatatat cagcccaaca gccctaagtc tcctccttta
     3781 ttattaggaa acaaaacaac aacaacaaaa aaatggcgtc atgaatatga acagcattgt
     3841 cagatgaatt agttgaagtg tttttttttt ttttgtactg tgtcctcaaa tttaatggat
     3901 taatgtgtct tgtatatata aaaagaaaac ctctaccttc a
//
LOCUS       XM_032651491            3850 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X25, mRNA.
ACCESSION   XM_032651491
VERSION     XM_032651491.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3850
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3850
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             124..3390
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X18"
                     /protein_id="XP_032507382.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSET
                     KIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPL
                     VFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQAL
                     AQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTM
                     MEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQ
                     KKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAP
                     SSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPS
                     SISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSA
                     ASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLH
                     TSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRS
                     SVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYS
                     IPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQ
                     QTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASAT
                     PFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLP
                     SALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILSLVDDQLDE
                     "
     misc_feature    271..384
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1669..1752
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 agtgtggagg agactgaggt aaagttggga gcgcagcggc gttggcggcg gcggcggcgg
       61 cggcggcagc gcggcggggc cggtattcta ccttgtaaat actgttattt gtatatactg
      121 taaatgatga cgtcggtggg cactaaccga gcccggggaa actgggaacc acctcaaaac
      181 caaaatcaga cacagcacaa gcagcggccc caggccactg cggaacaaat tcgacttgca
      241 cagatgattt cggaccataa tgatgctgac tttgaggaaa aggtgaaaca attgattgat
      301 atcacaggca agaaccagga tgaatgtgtc attgctttgc atgactgcaa cggagatgtc
      361 aacagagcca tcaatgtact gctggaagga aacccagata cgcattcctg ggagatggtt
      421 gggaagaaga aaggagtctc aggacagaag gacagtggcc aaacggaatc caacgaggaa
      481 ggcaaagaaa atcgagaccg ggacagagac tatagtcggc gacgtggtgg gccaccaaga
      541 cgggggagag gtgccagccg cggacgagag tttcgaggtc aggaaaatgg attagatggc
      601 accaagagtg gagggccttc tggaagaggc acagaaagag gcagaagagg tcgtggccga
      661 ggcagaggtg gctctggtag gcggggagga aggttttctg ctcaaggaat gggaaccttt
      721 aacccagctg attatgcaga gccggccaat actgatgata actatggcaa taatagcggc
      781 aatacatgga acaacactgg ccactttgaa ccagatgatg ggacgagact tgatttcatt
      841 ggggttgagg ggtcaaatta tccccgaaaa tttgagactg ctcctggtgc atggaggact
      901 gcaacagagg agtggggaac tgaagattgg aatgaagatc tttctgagac caagatcttc
      961 actgcctcta atgtgtcgtc agtgcctctg cctgcggaga atgtgacaat cactgctggt
     1021 cagagaattg accttgctgt tctgttgggg aagacaccat cttcaatgga gaatgattca
     1081 tctaatctgg atccatctca ggctccttct cttgcccagc ctctggtgtt cagtaactcg
     1141 aagcagagtg ccatatcaca gcctgcttca gggaacacgt tttctcatca cagtatggtg
     1201 agcatgttag ggaaaggatt tggtgatgtc ggtgaagcta aaggcagcag caccacaggc
     1261 tcccagttct tggagcaatt caagactgct caggccctgg ctcagttggc agctcagcat
     1321 tctcaatctg gaaccaccac cacctcctct tgggacatgg gctccaccac acaatcccca
     1381 tcgctggtgc agtatgattt gaagaaccca aatgattcaa cagtgcacag cccctttaca
     1441 aagcgccagg ctttcacctc atcttcaacc atgatggagg tgttccttca ggagaagcca
     1501 cctgcagtgg ctacctccac tgctgcacct ccacccccat cttctcctct gccaagcaaa
     1561 tccacctcgg ctccacaaat gtctcctggg tcttcagaca accaatcgtc cagccctcag
     1621 ccggctcagc aaaaactgaa acagcagaag aaaaaagcct ccttgacttc taagattcct
     1681 gctctggctg tggagatgcc tggctcggca gatatctcag ggctaaatct gcagtttggg
     1741 gcgttgcagt ttgggtcaga gcctgtcctt tctgattatg agtccacccc caccacgagc
     1801 gcctcttcaa gccaggctcc aagtagcctc tataccagca cggccagtga atcttcatcc
     1861 acaatttcat ctaaccagag tcaggagtct ggttatcaga gtggcccaat tcagtcgaca
     1921 acctatacct cccaaaataa tgctcagggc cctctatatg aacagagatc cacacagact
     1981 cggcggtacc ccagctccat ctcttcatca ccccaaaagg acttgactca ggcaaagaat
     2041 ggcttcagtt ctgtgcaggc cacgcagtta cagaccacgc aatctgttga aggtgctaca
     2101 ggctctgcag tgaaatctga ctcaccttcc acttctagca tcccccctct cagtgaaacg
     2161 gtatctgcag cttccttact gacgacaacc aatcagcact catcttcctt gggtggcttg
     2221 agccacaatg aggagattcc aaatagtacc accacacaac acagcagcac gttatctact
     2281 cagcagaata ccctttcgtc atcaacatct tctgggcgca cttcgacatc cactcttttg
     2341 cacacaagcg tggagagtga ggcgaatctt cattcttcct ccagcacttt ctccaccaca
     2401 tccagcacag tctctgcacc tcccccagtg gtcagtgtct cttccagtct caatagtggc
     2461 agtagcttgg gcctcagcct aggcagcaac tctaccgtca cagcctccac tcgaagctca
     2521 gttgctacaa cttcaggaaa agctcctccc aacctccctc ctggggtccc gccgttgttg
     2581 cctaatccat atattatggc tccagggctg ttacatgcct acccgccaca agtatatggt
     2641 tatgatgact tgcagatgct tcagacaaga tttccattgg attactacag catcccattt
     2701 cccacaccca ccactccgct gactgggagg gatggtagcc tggccagcaa cccttattct
     2761 ggtgacctca caaagttcgg ccgtggggat gcctcctccc cggccccggc cacaaccttg
     2821 gcccagcccc agcagaacca gacacagact caccatacca cgcagcagac attcctgaac
     2881 ccggcgctgc ctcctggcta cagttacacc agcctgccat actacacagg ggttccgggc
     2941 ctccccagca ccttccagta tgggcctgct gtgttccctg tggctcctac ctcttccaag
     3001 cagcatggtg tgaatgtcag tgtgaatgca tcagccaccc ctttccaaca gccaagtgga
     3061 tatgggtctc atggatacaa cactggtgta tcagtcacct ccagtaacac aggcgtgcca
     3121 gatatctcgg gttctgtgta ctccaaaacc cagcagtcct ttgagaaaca aggttttcat
     3181 tccggtactc ctgctgcctc cttcaacttg ccttcagccc taggaagtgg ggggcccatc
     3241 aatccggcca cagctgctgc ctacccacct gcccccttta tgcacattct gaccccccat
     3301 cagcaaccgc actcccagat acttcaccat cacctgcagc aggatggcca ggatatcctc
     3361 agtctcgtcg atgaccagct tgatgaataa gtattactgt accaactggg ccttctctag
     3421 caggccccga aggcagtgga ataaaatgaa atcttcgccc tttaagaact cctctgacct
     3481 taatgtgcta gtatcttgcc cttgagggca ttcccttccc cctctcccct aagaattaca
     3541 cagcgtggtg cctggaaaga atcactgcaa atcttcattt cctccagatc tacagcagat
     3601 tttaggcaat gaagggatag cagatattgg gtggaaaggg aaagggttaa gcaggagttg
     3661 aaagaaatgg ctttgtagaa tcaaagtgta atttagatgg atccaggcaa atgaactgga
     3721 aagaaatgag ggcaacatgc actgttggct agcaaaactg aagcagtagt tcttacttct
     3781 tgagtgcttt cacttcaagt agctaatatc caaccccttg aaaaggagtc tagagcaagg
     3841 ccagggttgg
//
LOCUS       XM_032651500            3928 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X26, mRNA.
ACCESSION   XM_032651500
VERSION     XM_032651500.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3928
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763489"
     CDS             120..3383
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X17"
                     /protein_id="XP_032507391.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    267..380
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1605..1688
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 aggtgtctcg tggcgaggcg gcacgcgcac gcttgcgtgc gcgtcctttt tcgcgtcacg
       61 tgctggggga cgcaggaagt attctacctt gtaaatactg ttatttgtat atactgtaaa
      121 tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct caaaaccaaa
      181 atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga cttgcacaga
      241 tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg attgatatca
      301 caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga gatgtcaaca
      361 gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag atggttggga
      421 agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac gaggaaggca
      481 aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca ccaagacggg
      541 ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta gatggcacca
      601 agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt ggccgaggca
      661 gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga acctttaacc
      721 cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat agcggcaata
      781 catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg aggactgcaa
      841 cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag atcttcactg
      901 cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact gctggtcaga
      961 gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat gattcatcta
     1021 atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt aactcgaagc
     1081 agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt atggtgagca
     1141 tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc acaggctccc
     1201 agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct cagcattctc
     1261 aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa tccccatcgc
     1321 tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc tttacaaagc
     1381 gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag aagccacctg
     1441 cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca agcaaatcca
     1501 cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc cctcagccgg
     1561 ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag attcctgctc
     1621 tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag tttggggcgt
     1681 tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc acgagcgcct
     1741 cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct tcatccacaa
     1801 tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag tcgacaacct
     1861 atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca cagactcggc
     1921 ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca aagaatggct
     1981 tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt gctacaggct
     2041 ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt gaaacggtat
     2101 ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt ggcttgagcc
     2161 acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta tctactcagc
     2221 agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact cttttgcaca
     2281 caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc accacatcca
     2341 gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat agtggcagta
     2401 gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga agctcagttg
     2461 ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg ttgttgccta
     2521 atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta tatggttatg
     2581 atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc ccatttccca
     2641 cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct tattctggtg
     2701 acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca accttggccc
     2761 agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc ctgaacccgg
     2821 cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt ccgggcctcc
     2881 ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct tccaagcagc
     2941 atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca agtggatatg
     3001 ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc gtgccagata
     3061 tctcgggttc tgtgtactcc aaaacccagc agtcctttga gaaacaaggt tttcattccg
     3121 gtactcctgc tgcctccttc aacttgcctt cagccctagg aagtgggggg cccatcaatc
     3181 cggccacagc tgctgcctac ccacctgccc cctttatgca cattctgacc ccccatcagc
     3241 aaccgcactc ccagatactt caccatcacc tgcagcagga tggccagacg ggcagcgggc
     3301 aacgtagcca gaccagctcc atcccgcaga agccccagac caacaagtct gcctacaaca
     3361 gctacagctg gggggccaac tgaggccctg actctcttct cccggtccca tcttctgaga
     3421 gggcttctca gcctggcaac tatggaaaca gcatcaaaga gagaaaggaa tgtggggggg
     3481 ttccactgcc cccaccccca gcggcccatc ccatgcctca gcttcatgtc tgtcccattc
     3541 ccataccatc cccactctgt tgtatgtatt ataggatttg tattttctcc tttttttttt
     3601 cttcctttcc tctcctcctc cccccttgca ttcaagatta tgaaactttg ctgtgggccc
     3661 tgccctccct tttcctcctc ctgttcaccc tggtggtgtg tgggtgaggt agggaggggg
     3721 gacccccaaa tatatatcag cccaacagcc ctaagtctcc tcctttatta ttaggaaaca
     3781 aaacaacaac aacaaaaaaa tggcgtcatg aatatgaaca gcattgtcag atgaattagt
     3841 tgaagtgttt tttttttttt tgtactgtgt cctcaaattt aatggattaa tgtgtcttgt
     3901 atatataaaa agaaaacctc taccttca
//
LOCUS       XM_032651507            3935 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X27, mRNA.
ACCESSION   XM_032651507
VERSION     XM_032651507.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3935
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3935
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3390
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X19"
                     /protein_id="XP_032507398.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3061 gtgccagata tctcgggttc tgtgtactcc aaaacccagt cctttgagaa acaaggtttt
     3121 cattccggta ctcctgctgc ctccttcaac ttgccttcag ccctaggaag tggggggccc
     3181 atcaatccgg ccacagctgc tgcctaccca cctgccccct ttatgcacat tctgaccccc
     3241 catcagcaac cgcactccca gatacttcac catcacctgc agcaggatgg ccagacgggc
     3301 agcgggcaac gtagccagac cagctccatc ccgcagaagc cccagaccaa caagtctgcc
     3361 tacaacagct acagctgggg ggccaactga ggccctgact ctcttctccc ggtcccatct
     3421 tctgagaggg cttctcagcc tggcaactat ggaaacagca tcaaagagag aaaggaatgt
     3481 gggggggttc cactgccccc acccccagcg gcccatccca tgcctcagct tcatgtctgt
     3541 cccattccca taccatcccc actctgttgt atgtattata ggatttgtat tttctccttt
     3601 tttttttctt cctttcctct cctcctcccc ccttgcattc aagattatga aactttgctg
     3661 tgggccctgc cctccctttt cctcctcctg ttcaccctgg tggtgtgtgg gtgaggtagg
     3721 gaggggggac ccccaaatat atatcagccc aacagcccta agtctcctcc tttattatta
     3781 ggaaacaaaa caacaacaac aaaaaaatgg cgtcatgaat atgaacagca ttgtcagatg
     3841 aattagttga agtgtttttt ttttttttgt actgtgtcct caaatttaat ggattaatgt
     3901 gtcttgtata tataaaaaga aaacctctac cttca
//
LOCUS       XM_032651516            3904 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X28, mRNA.
ACCESSION   XM_032651516
VERSION     XM_032651516.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3904
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             99..3359
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X19"
                     /protein_id="XP_032507407.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    246..359
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1584..1667
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg agactgagta
       61 ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg gtgggcacta
      121 accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag cacaagcagc
      181 ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac cataatgatg
      241 ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac caggatgaat
      301 gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat gtactgctgg
      361 aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga gtctcaggac
      421 agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga gaccgggaca
      481 gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc agccgcggac
      541 gagagtttcg aggtcaggaa aatggattag atggcaccaa gagtggaggg ccttctggaa
      601 gaggcacaga aagaggcaga agaggtcgtg gccgaggcag aggtggctct ggtaggcggg
      661 gaggaaggtt ttctgctcaa ggaatgggaa cctttaaccc agctgattat gcagagccgg
      721 ccaatactga tgataactat ggcaataata gcggcaatac atggaacaac actggccact
      781 ttgaaccaga tgatgggacg agtgcatgga ggactgcaac agaggagtgg ggaactgaag
      841 attggaatga agatctttct gagaccaaga tcttcactgc ctctaatgtg tcgtcagtgc
      901 ctctgcctgc ggagaatgtg acaatcactg ctggtcagag aattgacctt gctgttctgt
      961 tggggaagac accatcttca atggagaatg attcatctaa tctggatcca tctcaggctc
     1021 cttctcttgc ccagcctctg gtgttcagta actcgaagca gagtgccata tcacagcctg
     1081 cttcagggaa cacgttttct catcacagta tggtgagcat gttagggaaa ggatttggtg
     1141 atgtcggtga agctaaaggc agcagcacca caggctccca gttcttggag caattcaaga
     1201 ctgctcaggc cctggctcag ttggcagctc agcattctca atctggaacc accaccacct
     1261 cctcttggga catgggctcc accacacaat ccccatcgct ggtgcagtat gatttgaaga
     1321 acccaaatga ttcaacagtg cacagcccct ttacaaagcg ccaggctttc acctcatctt
     1381 caaccatgat ggaggtgttc cttcaggaga agccacctgc agtggctacc tccactgctg
     1441 cacctccacc cccatcttct cctctgccaa gcaaatccac ctcggctcca caaatgtctc
     1501 ctgggtcttc agacaaccaa tcgtccagcc ctcagccggc tcagcaaaaa ctgaaacagc
     1561 agaagaaaaa agcctccttg acttctaaga ttcctgctct ggctgtggag atgcctggct
     1621 cggcagatat ctcagggcta aatctgcagt ttggggcgtt gcagtttggg tcagagcctg
     1681 tcctttctga ttatgagtcc acccccacca cgagcgcctc ttcaagccag gctccaagta
     1741 gcctctatac cagcacggcc agtgaatctt catccacaat ttcatctaac cagagtcagg
     1801 agtctggtta tcagagtggc ccaattcagt cgacaaccta tacctcccaa aataatgctc
     1861 agggccctct atatgaacag agatccacac agactcggcg gtaccccagc tccatctctt
     1921 catcacccca aaaggacttg actcaggcaa agaatggctt cagttctgtg caggccacgc
     1981 agttacagac cacgcaatct gttgaaggtg ctacaggctc tgcagtgaaa tctgactcac
     2041 cttccacttc tagcatcccc cctctcagtg aaacggtatc tgcagcttcc ttactgacga
     2101 caaccaatca gcactcatct tccttgggtg gcttgagcca caatgaggag attccaaata
     2161 gtaccaccac acaacacagc agcacgttat ctactcagca gaataccctt tcgtcatcaa
     2221 catcttctgg gcgcacttcg acatccactc ttttgcacac aagcgtggag agtgaggcga
     2281 atcttcattc ttcctccagc actttctcca ccacatccag cacagtctct gcacctcccc
     2341 cagtggtcag tgtctcttcc agtctcaata gtggcagtag cttgggcctc agcctaggca
     2401 gcaactctac cgtcacagcc tccactcgaa gctcagttgc tacaacttca ggaaaagctc
     2461 ctcccaacct ccctcctggg gtcccgccgt tgttgcctaa tccatatatt atggctccag
     2521 ggctgttaca tgcctacccg ccacaagtat atggttatga tgacttgcag atgcttcaga
     2581 caagatttcc attggattac tacagcatcc catttcccac acccaccact ccgctgactg
     2641 ggagggatgg tagcctggcc agcaaccctt attctggtga cctcacaaag ttcggccgtg
     2701 gggatgcctc ctccccggcc ccggccacaa ccttggccca gccccagcag aaccagacac
     2761 agactcacca taccacgcag cagacattcc tgaacccggc gctgcctcct ggctacagtt
     2821 acaccagcct gccatactac acaggggttc cgggcctccc cagcaccttc cagtatgggc
     2881 ctgctgtgtt ccctgtggct cctacctctt ccaagcagca tggtgtgaat gtcagtgtga
     2941 atgcatcagc cacccctttc caacagccaa gtggatatgg gtctcatgga tacaacactg
     3001 gtgtatcagt cacctccagt aacacaggcg tgccagatat ctcgggttct gtgtactcca
     3061 aaacccagtc ctttgagaaa caaggttttc attccggtac tcctgctgcc tccttcaact
     3121 tgccttcagc cctaggaagt ggggggccca tcaatccggc cacagctgct gcctacccac
     3181 ctgccccctt tatgcacatt ctgacccccc atcagcaacc gcactcccag atacttcacc
     3241 atcacctgca gcaggatggc cagacgggca gcgggcaacg tagccagacc agctccatcc
     3301 cgcagaagcc ccagaccaac aagtctgcct acaacagcta cagctggggg gccaactgag
     3361 gccctgactc tcttctcccg gtcccatctt ctgagagggc ttctcagcct ggcaactatg
     3421 gaaacagcat caaagagaga aaggaatgtg ggggggttcc actgccccca cccccagcgg
     3481 cccatcccat gcctcagctt catgtctgtc ccattcccat accatcccca ctctgttgta
     3541 tgtattatag gatttgtatt ttctcctttt ttttttcttc ctttcctctc ctcctccccc
     3601 cttgcattca agattatgaa actttgctgt gggccctgcc ctcccttttc ctcctcctgt
     3661 tcaccctggt ggtgtgtggg tgaggtaggg aggggggacc cccaaatata tatcagccca
     3721 acagccctaa gtctcctcct ttattattag gaaacaaaac aacaacaaca aaaaaatggc
     3781 gtcatgaata tgaacagcat tgtcagatga attagttgaa gtgttttttt tttttttgta
     3841 ctgtgtcctc aaatttaatg gattaatgtg tcttgtatat ataaaaagaa aacctctacc
     3901 ttca
//
LOCUS       XM_032651522            3938 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X29, mRNA.
ACCESSION   XM_032651522
VERSION     XM_032651522.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3938
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             133..3393
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X19"
                     /protein_id="XP_032507413.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    280..393
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1618..1701
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gcagccgtag tggggggggc catgcggcta gagcctgaga cgggggagag cgagaaagag
       61 cgcgagcgag ctaggcctgg gccccgcctg agtattctac cttgtaaata ctgttatttg
      121 tatatactgt aaatgatgac gtcggtgggc actaaccgag cccggggaaa ctgggaacca
      181 cctcaaaacc aaaatcagac acagcacaag cagcggcccc aggccactgc ggaacaaatt
      241 cgacttgcac agatgatttc ggaccataat gatgctgact ttgaggaaaa ggtgaaacaa
      301 ttgattgata tcacaggcaa gaaccaggat gaatgtgtca ttgctttgca tgactgcaac
      361 ggagatgtca acagagccat caatgtactg ctggaaggaa acccagatac gcattcctgg
      421 gagatggttg ggaagaagaa aggagtctca ggacagaagg acagtggcca aacggaatcc
      481 aacgaggaag gcaaagaaaa tcgagaccgg gacagagact atagtcggcg acgtggtggg
      541 ccaccaagac gggggagagg tgccagccgc ggacgagagt ttcgaggtca ggaaaatgga
      601 ttagatggca ccaagagtgg agggccttct ggaagaggca cagaaagagg cagaagaggt
      661 cgtggccgag gcagaggtgg ctctggtagg cggggaggaa ggttttctgc tcaaggaatg
      721 ggaaccttta acccagctga ttatgcagag ccggccaata ctgatgataa ctatggcaat
      781 aatagcggca atacatggaa caacactggc cactttgaac cagatgatgg gacgagtgca
      841 tggaggactg caacagagga gtggggaact gaagattgga atgaagatct ttctgagacc
      901 aagatcttca ctgcctctaa tgtgtcgtca gtgcctctgc ctgcggagaa tgtgacaatc
      961 actgctggtc agagaattga ccttgctgtt ctgttgggga agacaccatc ttcaatggag
     1021 aatgattcat ctaatctgga tccatctcag gctccttctc ttgcccagcc tctggtgttc
     1081 agtaactcga agcagagtgc catatcacag cctgcttcag ggaacacgtt ttctcatcac
     1141 agtatggtga gcatgttagg gaaaggattt ggtgatgtcg gtgaagctaa aggcagcagc
     1201 accacaggct cccagttctt ggagcaattc aagactgctc aggccctggc tcagttggca
     1261 gctcagcatt ctcaatctgg aaccaccacc acctcctctt gggacatggg ctccaccaca
     1321 caatccccat cgctggtgca gtatgatttg aagaacccaa atgattcaac agtgcacagc
     1381 ccctttacaa agcgccaggc tttcacctca tcttcaacca tgatggaggt gttccttcag
     1441 gagaagccac ctgcagtggc tacctccact gctgcacctc cacccccatc ttctcctctg
     1501 ccaagcaaat ccacctcggc tccacaaatg tctcctgggt cttcagacaa ccaatcgtcc
     1561 agccctcagc cggctcagca aaaactgaaa cagcagaaga aaaaagcctc cttgacttct
     1621 aagattcctg ctctggctgt ggagatgcct ggctcggcag atatctcagg gctaaatctg
     1681 cagtttgggg cgttgcagtt tgggtcagag cctgtccttt ctgattatga gtccaccccc
     1741 accacgagcg cctcttcaag ccaggctcca agtagcctct ataccagcac ggccagtgaa
     1801 tcttcatcca caatttcatc taaccagagt caggagtctg gttatcagag tggcccaatt
     1861 cagtcgacaa cctatacctc ccaaaataat gctcagggcc ctctatatga acagagatcc
     1921 acacagactc ggcggtaccc cagctccatc tcttcatcac cccaaaagga cttgactcag
     1981 gcaaagaatg gcttcagttc tgtgcaggcc acgcagttac agaccacgca atctgttgaa
     2041 ggtgctacag gctctgcagt gaaatctgac tcaccttcca cttctagcat cccccctctc
     2101 agtgaaacgg tatctgcagc ttccttactg acgacaacca atcagcactc atcttccttg
     2161 ggtggcttga gccacaatga ggagattcca aatagtacca ccacacaaca cagcagcacg
     2221 ttatctactc agcagaatac cctttcgtca tcaacatctt ctgggcgcac ttcgacatcc
     2281 actcttttgc acacaagcgt ggagagtgag gcgaatcttc attcttcctc cagcactttc
     2341 tccaccacat ccagcacagt ctctgcacct cccccagtgg tcagtgtctc ttccagtctc
     2401 aatagtggca gtagcttggg cctcagccta ggcagcaact ctaccgtcac agcctccact
     2461 cgaagctcag ttgctacaac ttcaggaaaa gctcctccca acctccctcc tggggtcccg
     2521 ccgttgttgc ctaatccata tattatggct ccagggctgt tacatgccta cccgccacaa
     2581 gtatatggtt atgatgactt gcagatgctt cagacaagat ttccattgga ttactacagc
     2641 atcccatttc ccacacccac cactccgctg actgggaggg atggtagcct ggccagcaac
     2701 ccttattctg gtgacctcac aaagttcggc cgtggggatg cctcctcccc ggccccggcc
     2761 acaaccttgg cccagcccca gcagaaccag acacagactc accataccac gcagcagaca
     2821 ttcctgaacc cggcgctgcc tcctggctac agttacacca gcctgccata ctacacaggg
     2881 gttccgggcc tccccagcac cttccagtat gggcctgctg tgttccctgt ggctcctacc
     2941 tcttccaagc agcatggtgt gaatgtcagt gtgaatgcat cagccacccc tttccaacag
     3001 ccaagtggat atgggtctca tggatacaac actggtgtat cagtcacctc cagtaacaca
     3061 ggcgtgccag atatctcggg ttctgtgtac tccaaaaccc agtcctttga gaaacaaggt
     3121 tttcattccg gtactcctgc tgcctccttc aacttgcctt cagccctagg aagtgggggg
     3181 cccatcaatc cggccacagc tgctgcctac ccacctgccc cctttatgca cattctgacc
     3241 ccccatcagc aaccgcactc ccagatactt caccatcacc tgcagcagga tggccagacg
     3301 ggcagcgggc aacgtagcca gaccagctcc atcccgcaga agccccagac caacaagtct
     3361 gcctacaaca gctacagctg gggggccaac tgaggccctg actctcttct cccggtccca
     3421 tcttctgaga gggcttctca gcctggcaac tatggaaaca gcatcaaaga gagaaaggaa
     3481 tgtggggggg ttccactgcc cccaccccca gcggcccatc ccatgcctca gcttcatgtc
     3541 tgtcccattc ccataccatc cccactctgt tgtatgtatt ataggatttg tattttctcc
     3601 tttttttttt cttcctttcc tctcctcctc cccccttgca ttcaagatta tgaaactttg
     3661 ctgtgggccc tgccctccct tttcctcctc ctgttcaccc tggtggtgtg tgggtgaggt
     3721 agggaggggg gacccccaaa tatatatcag cccaacagcc ctaagtctcc tcctttatta
     3781 ttaggaaaca aaacaacaac aacaaaaaaa tggcgtcatg aatatgaaca gcattgtcag
     3841 atgaattagt tgaagtgttt tttttttttt tgtactgtgt cctcaaattt aatggattaa
     3901 tgtgtcttgt atatataaaa agaaaacctc taccttca
//
LOCUS       XM_032651532            3847 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X30, mRNA.
ACCESSION   XM_032651532
VERSION     XM_032651532.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3847
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3847
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3387
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X20"
                     /protein_id="XP_032507423.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQDILSLVDDQLDE"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3061 gtgccagata tctcgggttc tgtgtactcc aaaacccagc agtcctttga gaaacaaggt
     3121 tttcattccg gtactcctgc tgcctccttc aacttgcctt cagccctagg aagtgggggg
     3181 cccatcaatc cggccacagc tgctgcctac ccacctgccc cctttatgca cattctgacc
     3241 ccccatcagc aaccgcactc ccagatactt caccatcacc tgcagcagga tggccagcta
     3301 ccatatttgc agatgattct ctgttgccag cgccagcagg aggagcagga tatcctcagt
     3361 ctcgtcgatg accagcttga tgaataagta ttactgtacc aactgggcct tctctagcag
     3421 gccccgaagg cagtggaata aaatgaaatc ttcgcccttt aagaactcct ctgaccttaa
     3481 tgtgctagta tcttgccctt gagggcattc ccttccccct ctcccctaag aattacacag
     3541 cgtggtgcct ggaaagaatc actgcaaatc ttcatttcct ccagatctac agcagatttt
     3601 aggcaatgaa gggatagcag atattgggtg gaaagggaaa gggttaagca ggagttgaaa
     3661 gaaatggctt tgtagaatca aagtgtaatt tagatggatc caggcaaatg aactggaaag
     3721 aaatgagggc aacatgcact gttggctagc aaaactgaag cagtagttct tacttcttga
     3781 gtgctttcac ttcaagtagc taatatccaa ccccttgaaa aggagtctag agcaaggcca
     3841 gggttgg
//
LOCUS       XM_032651540            3844 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X31, mRNA.
ACCESSION   XM_032651540
VERSION     XM_032651540.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3844
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3844
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3384
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X21"
                     /protein_id="XP_032507431.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQDILSLVDDQLDE"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3061 gtgccagata tctcgggttc tgtgtactcc aaaacccagt cctttgagaa acaaggtttt
     3121 cattccggta ctcctgctgc ctccttcaac ttgccttcag ccctaggaag tggggggccc
     3181 atcaatccgg ccacagctgc tgcctaccca cctgccccct ttatgcacat tctgaccccc
     3241 catcagcaac cgcactccca gatacttcac catcacctgc agcaggatgg ccagctacca
     3301 tatttgcaga tgattctctg ttgccagcgc cagcaggagg agcaggatat cctcagtctc
     3361 gtcgatgacc agcttgatga ataagtatta ctgtaccaac tgggccttct ctagcaggcc
     3421 ccgaaggcag tggaataaaa tgaaatcttc gccctttaag aactcctctg accttaatgt
     3481 gctagtatct tgcccttgag ggcattccct tccccctctc ccctaagaat tacacagcgt
     3541 ggtgcctgga aagaatcact gcaaatcttc atttcctcca gatctacagc agattttagg
     3601 caatgaaggg atagcagata ttgggtggaa agggaaaggg ttaagcagga gttgaaagaa
     3661 atggctttgt agaatcaaag tgtaatttag atggatccag gcaaatgaac tggaaagaaa
     3721 tgagggcaac atgcactgtt ggctagcaaa actgaagcag tagttcttac ttcttgagtg
     3781 ctttcacttc aagtagctaa tatccaaccc cttgaaaagg agtctagagc aaggccaggg
     3841 ttgg
//
LOCUS       XM_032651549            3826 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X32, mRNA.
ACCESSION   XM_032651549
VERSION     XM_032651549.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3826
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3826
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3366
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X22"
                     /protein_id="XP_032507440.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPI
                     NPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILSLVDDQLDE"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1645..1728
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagtgcatgg aggactgcaa cagaggagtg gggaactgaa
      901 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
      961 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1021 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1081 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1141 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1201 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1261 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1321 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1381 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1441 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1501 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1561 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1621 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1681 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1741 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1801 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1861 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1921 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     1981 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2041 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2101 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2161 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2221 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2281 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2341 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2401 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2461 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2521 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2581 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2641 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2701 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2761 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2821 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2881 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     2941 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3001 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3061 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3121 aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc tgcctccttc
     3181 aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc tgctgcctac
     3241 ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc ccagatactt
     3301 caccatcacc tgcagcagga tggccaggat atcctcagtc tcgtcgatga ccagcttgat
     3361 gaataagtat tactgtacca actgggcctt ctctagcagg ccccgaaggc agtggaataa
     3421 aatgaaatct tcgcccttta agaactcctc tgaccttaat gtgctagtat cttgcccttg
     3481 agggcattcc cttccccctc tcccctaaga attacacagc gtggtgcctg gaaagaatca
     3541 ctgcaaatct tcatttcctc cagatctaca gcagatttta ggcaatgaag ggatagcaga
     3601 tattgggtgg aaagggaaag ggttaagcag gagttgaaag aaatggcttt gtagaatcaa
     3661 agtgtaattt agatggatcc aggcaaatga actggaaaga aatgagggca acatgcactg
     3721 ttggctagca aaactgaagc agtagttctt acttcttgag tgctttcact tcaagtagct
     3781 aatatccaac cccttgaaaa ggagtctaga gcaaggccag ggttgg
//
LOCUS       XM_032651558            3869 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X33, mRNA.
ACCESSION   XM_032651558
VERSION     XM_032651558.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3869
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3869
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             169..3408
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X22"
                     /protein_id="XP_032507449.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPI
                     NPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILSLVDDQLDE"
     misc_feature    316..429
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1687..1770
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 aagtgggagg gggaaggcgc gagagcgagc gcaagaggga aaaggaggga ggggggtagg
       61 gaggagggaa ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg
      121 agactgagta ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg
      181 gtgggcacta accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag
      241 cacaagcagc ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac
      301 cataatgatg ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac
      361 caggatgaat gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat
      421 gtactgctgg aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga
      481 gtctcaggac agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga
      541 gaccgggaca gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc
      601 agccgcggac gagagtgtat gcatggggct ttaacaaaac tagttgtggt tcgaggtcag
      661 gaaaatggat tagatggcac caagagtgga gggccttctg gaagaggcac agaaagaggc
      721 agaagaggtc gtggccgagg cagaggtggc tctggtaggc ggggaggaag gttttctgct
      781 caaggaatgg gaacctttaa cccagctgat tatgcagagc cggccaatac tgatgataac
      841 tatggcaata atagcggcaa tacatggaac aacactggcc actttgaacc agatgatggg
      901 acgagtgcat ggaggactgc aacagaggag tggggaactg aagattggaa tgaagatctt
      961 tctgagacca agatcttcac tgcctctaat gtgtcgtcag tgcctctgcc tgcggagaat
     1021 gtgacaatca ctgctggtca gagaattgac cttgctgttc tgttggggaa gacaccatct
     1081 tcaatggaga atgattcatc taatctggat ccatctcagg ctccttctct tgcccagcct
     1141 ctggtgttca gtaactcgaa gcagagtgcc atatcacagc ctgcttcagg gaacacgttt
     1201 tctcatcaca gtatggtgag catgttaggg aaaggatttg gtgatgtcgg tgaagctaaa
     1261 ggcagcagca ccacaggctc ccagttcttg gagcaattca agactgctca ggccctggct
     1321 cagttggcag ctcagcattc tcaatctgga accaccacca cctcctcttg ggacatgggc
     1381 tccaccacac aatccccatc gctggtgcag tatgatttga agaacccaaa tgattcaaca
     1441 gtgcacagcc cctttacaaa gcgccaggct ttcacctcat cttcaaccat gatggaggtg
     1501 ttccttcagg agaagccacc tgcagtggct acctccactg ctgcacctcc acccccatct
     1561 tctcctctgc caagcaaatc cacctcggct ccacaaatgt ctcctgggtc ttcagacaac
     1621 caatcgtcca gccctcagcc ggctcagcaa aaactgaaac agcagaagaa aaaagcctcc
     1681 ttgacttcta agattcctgc tctggctgtg gagatgcctg gctcggcaga tatctcaggg
     1741 ctaaatctgc agtttggggc gttgcagttt gggtcagagc ctgtcctttc tgattatgag
     1801 tccaccccca ccacgagcgc ctcttcaagc caggctccaa gtagcctcta taccagcacg
     1861 gccagtgaat cttcatccac aatttcatct aaccagagtc aggagtctgg ttatcagagt
     1921 ggcccaattc agtcgacaac ctatacctcc caaaataatg ctcagggccc tctatatgaa
     1981 cagagatcca cacagactcg gcggtacccc agctccatct cttcatcacc ccaaaaggac
     2041 ttgactcagg caaagaatgg cttcagttct gtgcaggcca cgcagttaca gaccacgcaa
     2101 tctgttgaag gtgctacagg ctctgcagtg aaatctgact caccttccac ttctagcatc
     2161 ccccctctca gtgaaacggt atctgcagct tccttactga cgacaaccaa tcagcactca
     2221 tcttccttgg gtggcttgag ccacaatgag gagattccaa atagtaccac cacacaacac
     2281 agcagcacgt tatctactca gcagaatacc ctttcgtcat caacatcttc tgggcgcact
     2341 tcgacatcca ctcttttgca cacaagcgtg gagagtgagg cgaatcttca ttcttcctcc
     2401 agcactttct ccaccacatc cagcacagtc tctgcacctc ccccagtggt cagtgtctct
     2461 tccagtctca atagtggcag tagcttgggc ctcagcctag gcagcaactc taccgtcaca
     2521 gcctccactc gaagctcagt tgctacaact tcaggaaaag ctcctcccaa cctccctcct
     2581 ggggtcccgc cgttgttgcc taatccatat attatggctc cagggctgtt acatgcctac
     2641 ccgccacaag tatatggtta tgatgacttg cagatgcttc agacaagatt tccattggat
     2701 tactacagca tcccatttcc cacacccacc actccgctga ctgggaggga tggtagcctg
     2761 gccagcaacc cttattctgg tgacctcaca aagttcggcc gtggggatgc ctcctccccg
     2821 gccccggcca caaccttggc ccagccccag cagaaccaga cacagactca ccataccacg
     2881 cagcagacat tcctgaaccc ggcgctgcct cctggctaca gttacaccag cctgccatac
     2941 tacacagggg ttccgggcct ccccagcacc ttccagtatg ggcctgctgt gttccctgtg
     3001 gctcctacct cttccaagca gcatggtgtg aatgtcagtg tgaatgcatc agccacccct
     3061 ttccaacagc caagtggata tgggtctcat ggatacaaca ctggtgtatc agtcacctcc
     3121 agtaacacag gcgtgccaga tatctcgggt tctgtgtact ccaaaaccca gcagtccttt
     3181 gagaaacaag gttttcattc cggtactcct gctgcctcct tcaacttgcc ttcagcccta
     3241 ggaagtgggg ggcccatcaa tccggccaca gctgctgcct acccacctgc cccctttatg
     3301 cacattctga ccccccatca gcaaccgcac tcccagatac ttcaccatca cctgcagcag
     3361 gatggccagg atatcctcag tctcgtcgat gaccagcttg atgaataagt attactgtac
     3421 caactgggcc ttctctagca ggccccgaag gcagtggaat aaaatgaaat cttcgccctt
     3481 taagaactcc tctgacctta atgtgctagt atcttgccct tgagggcatt cccttccccc
     3541 tctcccctaa gaattacaca gcgtggtgcc tggaaagaat cactgcaaat cttcatttcc
     3601 tccagatcta cagcagattt taggcaatga agggatagca gatattgggt ggaaagggaa
     3661 agggttaagc aggagttgaa agaaatggct ttgtagaatc aaagtgtaat ttagatggat
     3721 ccaggcaaat gaactggaaa gaaatgaggg caacatgcac tgttggctag caaaactgaa
     3781 gcagtagttc ttacttcttg agtgctttca cttcaagtag ctaatatcca accccttgaa
     3841 aaggagtcta gagcaaggcc agggttggg
//
LOCUS       XM_032651567            3824 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X34, mRNA.
ACCESSION   XM_032651567
VERSION     XM_032651567.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3824
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3824
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3363
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X23"
                     /protein_id="XP_032507458.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPIN
                     PATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILSLVDDQLDE"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1645..1728
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagtgcatgg aggactgcaa cagaggagtg gggaactgaa
      901 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
      961 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1021 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1081 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1141 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1201 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1261 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1321 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1381 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1441 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1501 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1561 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1621 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1681 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1741 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1801 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1861 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1921 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     1981 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2041 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2101 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2161 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2221 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2281 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2341 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2401 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2461 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2521 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2581 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2641 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2701 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2761 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2821 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2881 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     2941 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3001 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3061 ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc tgtgtactcc
     3121 aaaacccagt cctttgagaa acaaggtttt cattccggta ctcctgctgc ctccttcaac
     3181 ttgccttcag ccctaggaag tggggggccc atcaatccgg ccacagctgc tgcctaccca
     3241 cctgccccct ttatgcacat tctgaccccc catcagcaac cgcactccca gatacttcac
     3301 catcacctgc agcaggatgg ccaggatatc ctcagtctcg tcgatgacca gcttgatgaa
     3361 taagtattac tgtaccaact gggccttctc tagcaggccc cgaaggcagt ggaataaaat
     3421 gaaatcttcg ccctttaaga actcctctga ccttaatgtg ctagtatctt gcccttgagg
     3481 gcattccctt ccccctctcc cctaagaatt acacagcgtg gtgcctggaa agaatcactg
     3541 caaatcttca tttcctccag atctacagca gattttaggc aatgaaggga tagcagatat
     3601 tgggtggaaa gggaaagggt taagcaggag ttgaaagaaa tggctttgta gaatcaaagt
     3661 gtaatttaga tggatccagg caaatgaact ggaaagaaat gagggcaaca tgcactgttg
     3721 gctagcaaaa ctgaagcagt agttcttact tcttgagtgc tttcacttca agtagctaat
     3781 atccaacccc ttgaaaagga gtctagagca aggccagggt tggg
//
LOCUS       XM_032651576            3866 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X35, mRNA.
ACCESSION   XM_032651576
VERSION     XM_032651576.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3866
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 3
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             169..3405
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X23"
                     /protein_id="XP_032507467.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPIN
                     PATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILSLVDDQLDE"
     misc_feature    316..429
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1687..1770
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 aagtgggagg gggaaggcgc gagagcgagc gcaagaggga aaaggaggga ggggggtagg
       61 gaggagggaa ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg
      121 agactgagta ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg
      181 gtgggcacta accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag
      241 cacaagcagc ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac
      301 cataatgatg ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac
      361 caggatgaat gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat
      421 gtactgctgg aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga
      481 gtctcaggac agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga
      541 gaccgggaca gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc
      601 agccgcggac gagagtgtat gcatggggct ttaacaaaac tagttgtggt tcgaggtcag
      661 gaaaatggat tagatggcac caagagtgga gggccttctg gaagaggcac agaaagaggc
      721 agaagaggtc gtggccgagg cagaggtggc tctggtaggc ggggaggaag gttttctgct
      781 caaggaatgg gaacctttaa cccagctgat tatgcagagc cggccaatac tgatgataac
      841 tatggcaata atagcggcaa tacatggaac aacactggcc actttgaacc agatgatggg
      901 acgagtgcat ggaggactgc aacagaggag tggggaactg aagattggaa tgaagatctt
      961 tctgagacca agatcttcac tgcctctaat gtgtcgtcag tgcctctgcc tgcggagaat
     1021 gtgacaatca ctgctggtca gagaattgac cttgctgttc tgttggggaa gacaccatct
     1081 tcaatggaga atgattcatc taatctggat ccatctcagg ctccttctct tgcccagcct
     1141 ctggtgttca gtaactcgaa gcagagtgcc atatcacagc ctgcttcagg gaacacgttt
     1201 tctcatcaca gtatggtgag catgttaggg aaaggatttg gtgatgtcgg tgaagctaaa
     1261 ggcagcagca ccacaggctc ccagttcttg gagcaattca agactgctca ggccctggct
     1321 cagttggcag ctcagcattc tcaatctgga accaccacca cctcctcttg ggacatgggc
     1381 tccaccacac aatccccatc gctggtgcag tatgatttga agaacccaaa tgattcaaca
     1441 gtgcacagcc cctttacaaa gcgccaggct ttcacctcat cttcaaccat gatggaggtg
     1501 ttccttcagg agaagccacc tgcagtggct acctccactg ctgcacctcc acccccatct
     1561 tctcctctgc caagcaaatc cacctcggct ccacaaatgt ctcctgggtc ttcagacaac
     1621 caatcgtcca gccctcagcc ggctcagcaa aaactgaaac agcagaagaa aaaagcctcc
     1681 ttgacttcta agattcctgc tctggctgtg gagatgcctg gctcggcaga tatctcaggg
     1741 ctaaatctgc agtttggggc gttgcagttt gggtcagagc ctgtcctttc tgattatgag
     1801 tccaccccca ccacgagcgc ctcttcaagc caggctccaa gtagcctcta taccagcacg
     1861 gccagtgaat cttcatccac aatttcatct aaccagagtc aggagtctgg ttatcagagt
     1921 ggcccaattc agtcgacaac ctatacctcc caaaataatg ctcagggccc tctatatgaa
     1981 cagagatcca cacagactcg gcggtacccc agctccatct cttcatcacc ccaaaaggac
     2041 ttgactcagg caaagaatgg cttcagttct gtgcaggcca cgcagttaca gaccacgcaa
     2101 tctgttgaag gtgctacagg ctctgcagtg aaatctgact caccttccac ttctagcatc
     2161 ccccctctca gtgaaacggt atctgcagct tccttactga cgacaaccaa tcagcactca
     2221 tcttccttgg gtggcttgag ccacaatgag gagattccaa atagtaccac cacacaacac
     2281 agcagcacgt tatctactca gcagaatacc ctttcgtcat caacatcttc tgggcgcact
     2341 tcgacatcca ctcttttgca cacaagcgtg gagagtgagg cgaatcttca ttcttcctcc
     2401 agcactttct ccaccacatc cagcacagtc tctgcacctc ccccagtggt cagtgtctct
     2461 tccagtctca atagtggcag tagcttgggc ctcagcctag gcagcaactc taccgtcaca
     2521 gcctccactc gaagctcagt tgctacaact tcaggaaaag ctcctcccaa cctccctcct
     2581 ggggtcccgc cgttgttgcc taatccatat attatggctc cagggctgtt acatgcctac
     2641 ccgccacaag tatatggtta tgatgacttg cagatgcttc agacaagatt tccattggat
     2701 tactacagca tcccatttcc cacacccacc actccgctga ctgggaggga tggtagcctg
     2761 gccagcaacc cttattctgg tgacctcaca aagttcggcc gtggggatgc ctcctccccg
     2821 gccccggcca caaccttggc ccagccccag cagaaccaga cacagactca ccataccacg
     2881 cagcagacat tcctgaaccc ggcgctgcct cctggctaca gttacaccag cctgccatac
     2941 tacacagggg ttccgggcct ccccagcacc ttccagtatg ggcctgctgt gttccctgtg
     3001 gctcctacct cttccaagca gcatggtgtg aatgtcagtg tgaatgcatc agccacccct
     3061 ttccaacagc caagtggata tgggtctcat ggatacaaca ctggtgtatc agtcacctcc
     3121 agtaacacag gcgtgccaga tatctcgggt tctgtgtact ccaaaaccca gtcctttgag
     3181 aaacaaggtt ttcattccgg tactcctgct gcctccttca acttgccttc agccctagga
     3241 agtggggggc ccatcaatcc ggccacagct gctgcctacc cacctgcccc ctttatgcac
     3301 attctgaccc cccatcagca accgcactcc cagatacttc accatcacct gcagcaggat
     3361 ggccaggata tcctcagtct cgtcgatgac cagcttgatg aataagtatt actgtaccaa
     3421 ctgggccttc tctagcaggc cccgaaggca gtggaataaa atgaaatctt cgccctttaa
     3481 gaactcctct gaccttaatg tgctagtatc ttgcccttga gggcattccc ttccccctct
     3541 cccctaagaa ttacacagcg tggtgcctgg aaagaatcac tgcaaatctt catttcctcc
     3601 agatctacag cagattttag gcaatgaagg gatagcagat attgggtgga aagggaaagg
     3661 gttaagcagg agttgaaaga aatggctttg tagaatcaaa gtgtaattta gatggatcca
     3721 ggcaaatgaa ctggaaagaa atgagggcaa catgcactgt tggctagcaa aactgaagca
     3781 gtagttctta cttcttgagt gctttcactt caagtagcta atatccaacc ccttgaaaag
     3841 gagtctagag caaggccagg gttggg
//
LOCUS       XM_032651585            3795 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X36, mRNA.
ACCESSION   XM_032651585
VERSION     XM_032651585.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3795
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3795
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3336
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X24"
                     /protein_id="XP_032507476.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQDILSLVDDQLDE"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3061 gtgccagata tctcgggttc tgtgtactcc aaaacccagc agtcctttga gaaacaaggt
     3121 tttcattccg gtactcctgc tgcctccttc aacttgcctt cagccctagg aagtgggggg
     3181 cccatcaatc cggccacagc tgctgcctac ccacctgccc cctttatgca cattctgacc
     3241 ccccatcagc aaccgcactc ccagatactt caccatcacc tgcagcagga tggccaggat
     3301 atcctcagtc tcgtcgatga ccagcttgat gaataagtat tactgtacca actgggcctt
     3361 ctctagcagg ccccgaaggc agtggaataa aatgaaatct tcgcccttta agaactcctc
     3421 tgaccttaat gtgctagtat cttgcccttg agggcattcc cttccccctc tcccctaaga
     3481 attacacagc gtggtgcctg gaaagaatca ctgcaaatct tcatttcctc cagatctaca
     3541 gcagatttta ggcaatgaag ggatagcaga tattgggtgg aaagggaaag ggttaagcag
     3601 gagttgaaag aaatggcttt gtagaatcaa agtgtaattt agatggatcc aggcaaatga
     3661 actggaaaga aatgagggca acatgcactg ttggctagca aaactgaagc agtagttctt
     3721 acttcttgag tgctttcact tcaagtagct aatatccaac cccttgaaaa ggagtctaga
     3781 gcaaggccag ggttg
//
LOCUS       XM_032651594            3764 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X37, mRNA.
ACCESSION   XM_032651594
VERSION     XM_032651594.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3764
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3764
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             99..3305
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X24"
                     /protein_id="XP_032507485.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
                     PFMHILTPHQQPHSQILHHHLQQDGQDILSLVDDQLDE"
     misc_feature    246..359
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1584..1667
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ccttatatca cgtgacaggg gcggcgcggc ccggggtgtc agtgtggagg agactgagta
       61 ttctaccttg taaatactgt tatttgtata tactgtaaat gatgacgtcg gtgggcacta
      121 accgagcccg gggaaactgg gaaccacctc aaaaccaaaa tcagacacag cacaagcagc
      181 ggccccaggc cactgcggaa caaattcgac ttgcacagat gatttcggac cataatgatg
      241 ctgactttga ggaaaaggtg aaacaattga ttgatatcac aggcaagaac caggatgaat
      301 gtgtcattgc tttgcatgac tgcaacggag atgtcaacag agccatcaat gtactgctgg
      361 aaggaaaccc agatacgcat tcctgggaga tggttgggaa gaagaaagga gtctcaggac
      421 agaaggacag tggccaaacg gaatccaacg aggaaggcaa agaaaatcga gaccgggaca
      481 gagactatag tcggcgacgt ggtgggccac caagacgggg gagaggtgcc agccgcggac
      541 gagagtttcg aggtcaggaa aatggattag atggcaccaa gagtggaggg ccttctggaa
      601 gaggcacaga aagaggcaga agaggtcgtg gccgaggcag aggtggctct ggtaggcggg
      661 gaggaaggtt ttctgctcaa ggaatgggaa cctttaaccc agctgattat gcagagccgg
      721 ccaatactga tgataactat ggcaataata gcggcaatac atggaacaac actggccact
      781 ttgaaccaga tgatgggacg agtgcatgga ggactgcaac agaggagtgg ggaactgaag
      841 attggaatga agatctttct gagaccaaga tcttcactgc ctctaatgtg tcgtcagtgc
      901 ctctgcctgc ggagaatgtg acaatcactg ctggtcagag aattgacctt gctgttctgt
      961 tggggaagac accatcttca atggagaatg attcatctaa tctggatcca tctcaggctc
     1021 cttctcttgc ccagcctctg gtgttcagta actcgaagca gagtgccata tcacagcctg
     1081 cttcagggaa cacgttttct catcacagta tggtgagcat gttagggaaa ggatttggtg
     1141 atgtcggtga agctaaaggc agcagcacca caggctccca gttcttggag caattcaaga
     1201 ctgctcaggc cctggctcag ttggcagctc agcattctca atctggaacc accaccacct
     1261 cctcttggga catgggctcc accacacaat ccccatcgct ggtgcagtat gatttgaaga
     1321 acccaaatga ttcaacagtg cacagcccct ttacaaagcg ccaggctttc acctcatctt
     1381 caaccatgat ggaggtgttc cttcaggaga agccacctgc agtggctacc tccactgctg
     1441 cacctccacc cccatcttct cctctgccaa gcaaatccac ctcggctcca caaatgtctc
     1501 ctgggtcttc agacaaccaa tcgtccagcc ctcagccggc tcagcaaaaa ctgaaacagc
     1561 agaagaaaaa agcctccttg acttctaaga ttcctgctct ggctgtggag atgcctggct
     1621 cggcagatat ctcagggcta aatctgcagt ttggggcgtt gcagtttggg tcagagcctg
     1681 tcctttctga ttatgagtcc acccccacca cgagcgcctc ttcaagccag gctccaagta
     1741 gcctctatac cagcacggcc agtgaatctt catccacaat ttcatctaac cagagtcagg
     1801 agtctggtta tcagagtggc ccaattcagt cgacaaccta tacctcccaa aataatgctc
     1861 agggccctct atatgaacag agatccacac agactcggcg gtaccccagc tccatctctt
     1921 catcacccca aaaggacttg actcaggcaa agaatggctt cagttctgtg caggccacgc
     1981 agttacagac cacgcaatct gttgaaggtg ctacaggctc tgcagtgaaa tctgactcac
     2041 cttccacttc tagcatcccc cctctcagtg aaacggtatc tgcagcttcc ttactgacga
     2101 caaccaatca gcactcatct tccttgggtg gcttgagcca caatgaggag attccaaata
     2161 gtaccaccac acaacacagc agcacgttat ctactcagca gaataccctt tcgtcatcaa
     2221 catcttctgg gcgcacttcg acatccactc ttttgcacac aagcgtggag agtgaggcga
     2281 atcttcattc ttcctccagc actttctcca ccacatccag cacagtctct gcacctcccc
     2341 cagtggtcag tgtctcttcc agtctcaata gtggcagtag cttgggcctc agcctaggca
     2401 gcaactctac cgtcacagcc tccactcgaa gctcagttgc tacaacttca ggaaaagctc
     2461 ctcccaacct ccctcctggg gtcccgccgt tgttgcctaa tccatatatt atggctccag
     2521 ggctgttaca tgcctacccg ccacaagtat atggttatga tgacttgcag atgcttcaga
     2581 caagatttcc attggattac tacagcatcc catttcccac acccaccact ccgctgactg
     2641 ggagggatgg tagcctggcc agcaaccctt attctggtga cctcacaaag ttcggccgtg
     2701 gggatgcctc ctccccggcc ccggccacaa ccttggccca gccccagcag aaccagacac
     2761 agactcacca taccacgcag cagacattcc tgaacccggc gctgcctcct ggctacagtt
     2821 acaccagcct gccatactac acaggggttc cgggcctccc cagcaccttc cagtatgggc
     2881 ctgctgtgtt ccctgtggct cctacctctt ccaagcagca tggtgtgaat gtcagtgtga
     2941 atgcatcagc cacccctttc caacagccaa gtggatatgg gtctcatgga tacaacactg
     3001 gtgtatcagt cacctccagt aacacaggcg tgccagatat ctcgggttct gtgtactcca
     3061 aaacccagca gtcctttgag aaacaaggtt ttcattccgg tactcctgct gcctccttca
     3121 acttgccttc agccctagga agtggggggc ccatcaatcc ggccacagct gctgcctacc
     3181 cacctgcccc ctttatgcac attctgaccc cccatcagca accgcactcc cagatacttc
     3241 accatcacct gcagcaggat ggccaggata tcctcagtct cgtcgatgac cagcttgatg
     3301 aataagtatt actgtaccaa ctgggccttc tctagcaggc cccgaaggca gtggaataaa
     3361 atgaaatctt cgccctttaa gaactcctct gaccttaatg tgctagtatc ttgcccttga
     3421 gggcattccc ttccccctct cccctaagaa ttacacagcg tggtgcctgg aaagaatcac
     3481 tgcaaatctt catttcctcc agatctacag cagattttag gcaatgaagg gatagcagat
     3541 attgggtgga aagggaaagg gttaagcagg agttgaaaga aatggctttg tagaatcaaa
     3601 gtgtaattta gatggatcca ggcaaatgaa ctggaaagaa atgagggcaa catgcactgt
     3661 tggctagcaa aactgaagca gtagttctta cttcttgagt gctttcactt caagtagcta
     3721 atatccaacc ccttgaaaag gagtctagag caaggccagg gttg
//
LOCUS       XM_032651604            3793 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X38, mRNA.
ACCESSION   XM_032651604
VERSION     XM_032651604.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3793
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3793
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3333
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X25"
                     /protein_id="XP_032507495.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
                     SSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQDILSLVDDQLDE"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggtgtatcag tcacctccag taacacaggc
     3061 gtgccagata tctcgggttc tgtgtactcc aaaacccagt cctttgagaa acaaggtttt
     3121 cattccggta ctcctgctgc ctccttcaac ttgccttcag ccctaggaag tggggggccc
     3181 atcaatccgg ccacagctgc tgcctaccca cctgccccct ttatgcacat tctgaccccc
     3241 catcagcaac cgcactccca gatacttcac catcacctgc agcaggatgg ccaggatatc
     3301 ctcagtctcg tcgatgacca gcttgatgaa taagtattac tgtaccaact gggccttctc
     3361 tagcaggccc cgaaggcagt ggaataaaat gaaatcttcg ccctttaaga actcctctga
     3421 ccttaatgtg ctagtatctt gcccttgagg gcattccctt ccccctctcc cctaagaatt
     3481 acacagcgtg gtgcctggaa agaatcactg caaatcttca tttcctccag atctacagca
     3541 gattttaggc aatgaaggga tagcagatat tgggtggaaa gggaaagggt taagcaggag
     3601 ttgaaagaaa tggctttgta gaatcaaagt gtaatttaga tggatccagg caaatgaact
     3661 ggaaagaaat gagggcaaca tgcactgttg gctagcaaaa ctgaagcagt agttcttact
     3721 tcttgagtgc tttcacttca agtagctaat atccaacccc ttgaaaagga gtctagagca
     3781 aggccagggt tgg
//
LOCUS       XM_032651610            3525 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X39, mRNA.
ACCESSION   XM_032651610
VERSION     XM_032651610.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3525
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3525
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3171
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X26"
                     /protein_id="XP_032507501.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWG
                     TEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLD
                     PSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQ
                     FLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFT
                     KRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSS
                     PQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
                     PTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYE
                     QRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTS
                     SIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTS
                     SGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLG
                     SNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQM
                     LQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQ
                     QNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQH
                     GVNVSVNASATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1705..1788
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagacttgat ttcattgggg ttgaggggtc aaattatccc
      901 cgaaaatttg agactgctcc tggtgcatgg aggactgcaa cagaggagtg gggaactgaa
      961 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
     1021 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1081 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1141 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1201 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1261 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1321 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1381 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1441 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1501 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1561 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1621 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1681 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1741 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1801 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1861 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1921 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1981 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     2041 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2101 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2161 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2221 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2281 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2341 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2401 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2461 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2521 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2581 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2641 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2701 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2761 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2821 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2881 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2941 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     3001 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3061 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3121 ggaagaaaat atccaccccc ttacaagcat ttctggacgg cagagagcta atttggccca
     3181 aggctggggg ctgtgttttg tgtgtgtgtg taaatttgca ctgaagtctt gtttcagaaa
     3241 ccagaccact gaggagagcc tgctgagctg tggccatggc ctgcgtggct tggggaaatg
     3301 agttggtgga taccttctgg gcttttgaac ttgcccttcc cccatttccc tctcccccat
     3361 gtgtctgacc ccgtcttacc catttcgaat tcaagcggtg cagcacctcc tccgaagcac
     3421 caatgcacac acctgctgtt gcttttgatt tctggaaggc atgtagttcc aacttgtaac
     3481 aaaatatttg tagtcttcaa taaactgtgg tatttcttta gctaa
//
LOCUS       XM_032651619            3492 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X40, mRNA.
ACCESSION   XM_032651619
VERSION     XM_032651619.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3492
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3492
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3138
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X27"
                     /protein_id="XP_032507510.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSET
                     KIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPL
                     VFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQAL
                     AQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTM
                     MEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQ
                     KKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAP
                     SSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPS
                     SISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSA
                     ASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLH
                     TSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRS
                     SVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYS
                     IPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQ
                     QTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASAT
                     PFQQPSGYGSHGYNTGRKYPPPYKHFWTAES"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1672..1755
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtttcgag gtcaggaaaa tggattagat
      601 ggcaccaaga gtggagggcc ttctggaaga ggcacagaaa gaggcagaag aggtcgtggc
      661 cgaggcagag gtggctctgg taggcgggga ggaaggtttt ctgctcaagg aatgggaacc
      721 tttaacccag ctgattatgc agagccggcc aatactgatg ataactatgg caataatagc
      781 ggcaatacat ggaacaacac tggccacttt gaaccagatg atgggacgag acttgatttc
      841 attggggttg aggggtcaaa ttatccccga aaatttgaga ctgctcctgg tgcatggagg
      901 actgcaacag aggagtgggg aactgaagat tggaatgaag atctttctga gaccaagatc
      961 ttcactgcct ctaatgtgtc gtcagtgcct ctgcctgcgg agaatgtgac aatcactgct
     1021 ggtcagagaa ttgaccttgc tgttctgttg gggaagacac catcttcaat ggagaatgat
     1081 tcatctaatc tggatccatc tcaggctcct tctcttgccc agcctctggt gttcagtaac
     1141 tcgaagcaga gtgccatatc acagcctgct tcagggaaca cgttttctca tcacagtatg
     1201 gtgagcatgt tagggaaagg atttggtgat gtcggtgaag ctaaaggcag cagcaccaca
     1261 ggctcccagt tcttggagca attcaagact gctcaggccc tggctcagtt ggcagctcag
     1321 cattctcaat ctggaaccac caccacctcc tcttgggaca tgggctccac cacacaatcc
     1381 ccatcgctgg tgcagtatga tttgaagaac ccaaatgatt caacagtgca cagccccttt
     1441 acaaagcgcc aggctttcac ctcatcttca accatgatgg aggtgttcct tcaggagaag
     1501 ccacctgcag tggctacctc cactgctgca cctccacccc catcttctcc tctgccaagc
     1561 aaatccacct cggctccaca aatgtctcct gggtcttcag acaaccaatc gtccagccct
     1621 cagccggctc agcaaaaact gaaacagcag aagaaaaaag cctccttgac ttctaagatt
     1681 cctgctctgg ctgtggagat gcctggctcg gcagatatct cagggctaaa tctgcagttt
     1741 ggggcgttgc agtttgggtc agagcctgtc ctttctgatt atgagtccac ccccaccacg
     1801 agcgcctctt caagccaggc tccaagtagc ctctatacca gcacggccag tgaatcttca
     1861 tccacaattt catctaacca gagtcaggag tctggttatc agagtggccc aattcagtcg
     1921 acaacctata cctcccaaaa taatgctcag ggccctctat atgaacagag atccacacag
     1981 actcggcggt accccagctc catctcttca tcaccccaaa aggacttgac tcaggcaaag
     2041 aatggcttca gttctgtgca ggccacgcag ttacagacca cgcaatctgt tgaaggtgct
     2101 acaggctctg cagtgaaatc tgactcacct tccacttcta gcatcccccc tctcagtgaa
     2161 acggtatctg cagcttcctt actgacgaca accaatcagc actcatcttc cttgggtggc
     2221 ttgagccaca atgaggagat tccaaatagt accaccacac aacacagcag cacgttatct
     2281 actcagcaga ataccctttc gtcatcaaca tcttctgggc gcacttcgac atccactctt
     2341 ttgcacacaa gcgtggagag tgaggcgaat cttcattctt cctccagcac tttctccacc
     2401 acatccagca cagtctctgc acctccccca gtggtcagtg tctcttccag tctcaatagt
     2461 ggcagtagct tgggcctcag cctaggcagc aactctaccg tcacagcctc cactcgaagc
     2521 tcagttgcta caacttcagg aaaagctcct cccaacctcc ctcctggggt cccgccgttg
     2581 ttgcctaatc catatattat ggctccaggg ctgttacatg cctacccgcc acaagtatat
     2641 ggttatgatg acttgcagat gcttcagaca agatttccat tggattacta cagcatccca
     2701 tttcccacac ccaccactcc gctgactggg agggatggta gcctggccag caacccttat
     2761 tctggtgacc tcacaaagtt cggccgtggg gatgcctcct ccccggcccc ggccacaacc
     2821 ttggcccagc cccagcagaa ccagacacag actcaccata ccacgcagca gacattcctg
     2881 aacccggcgc tgcctcctgg ctacagttac accagcctgc catactacac aggggttccg
     2941 ggcctcccca gcaccttcca gtatgggcct gctgtgttcc ctgtggctcc tacctcttcc
     3001 aagcagcatg gtgtgaatgt cagtgtgaat gcatcagcca cccctttcca acagccaagt
     3061 ggatatgggt ctcatggata caacactgga agaaaatatc caccccctta caagcatttc
     3121 tggacggcag agagctaatt tggcccaagg ctgggggctg tgttttgtgt gtgtgtgtaa
     3181 atttgcactg aagtcttgtt tcagaaacca gaccactgag gagagcctgc tgagctgtgg
     3241 ccatggcctg cgtggcttgg ggaaatgagt tggtggatac cttctgggct tttgaacttg
     3301 cccttccccc atttccctct cccccatgtg tctgaccccg tcttacccat ttcgaattca
     3361 agcggtgcag cacctcctcc gaagcaccaa tgcacacacc tgctgttgct tttgatttct
     3421 ggaaggcatg tagttccaac ttgtaacaaa atatttgtag tcttcaataa actgtggtat
     3481 ttctttagct aa
//
LOCUS       XM_032651628            3570 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X41, mRNA.
ACCESSION   XM_032651628
VERSION     XM_032651628.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3570
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 16 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             205..3216
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X27"
                     /protein_id="XP_032507519.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSET
                     KIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPL
                     VFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQAL
                     AQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTM
                     MEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQ
                     KKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAP
                     SSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPS
                     SISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSA
                     ASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLH
                     TSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRS
                     SVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYS
                     IPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQ
                     QTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASAT
                     PFQQPSGYGSHGYNTGRKYPPPYKHFWTAES"
     misc_feature    352..465
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1750..1833
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggggcggcgc ggcccggggt gtcagtgtgg aggagactga ggaaatgtaa aactcaattc
       61 ttaatgactg catcaaacag caaagaccta tgtaacatat tgacccaact ggctgaagaa
      121 tttatccaca gggaagttgg ctttctttgt gacccaagaa acagtattct accttgtaaa
      181 tactgttatt tgtatatact gtaaatgatg acgtcggtgg gcactaaccg agcccgggga
      241 aactgggaac cacctcaaaa ccaaaatcag acacagcaca agcagcggcc ccaggccact
      301 gcggaacaaa ttcgacttgc acagatgatt tcggaccata atgatgctga ctttgaggaa
      361 aaggtgaaac aattgattga tatcacaggc aagaaccagg atgaatgtgt cattgctttg
      421 catgactgca acggagatgt caacagagcc atcaatgtac tgctggaagg aaacccagat
      481 acgcattcct gggagatggt tgggaagaag aaaggagtct caggacagaa ggacagtggc
      541 caaacggaat ccaacgagga aggcaaagaa aatcgagacc gggacagaga ctatagtcgg
      601 cgacgtggtg ggccaccaag acgggggaga ggtgccagcc gcggacgaga gtttcgaggt
      661 caggaaaatg gattagatgg caccaagagt ggagggcctt ctggaagagg cacagaaaga
      721 ggcagaagag gtcgtggccg aggcagaggt ggctctggta ggcggggagg aaggttttct
      781 gctcaaggaa tgggaacctt taacccagct gattatgcag agccggccaa tactgatgat
      841 aactatggca ataatagcgg caatacatgg aacaacactg gccactttga accagatgat
      901 gggacgagac ttgatttcat tggggttgag gggtcaaatt atccccgaaa atttgagact
      961 gctcctggtg catggaggac tgcaacagag gagtggggaa ctgaagattg gaatgaagat
     1021 ctttctgaga ccaagatctt cactgcctct aatgtgtcgt cagtgcctct gcctgcggag
     1081 aatgtgacaa tcactgctgg tcagagaatt gaccttgctg ttctgttggg gaagacacca
     1141 tcttcaatgg agaatgattc atctaatctg gatccatctc aggctccttc tcttgcccag
     1201 cctctggtgt tcagtaactc gaagcagagt gccatatcac agcctgcttc agggaacacg
     1261 ttttctcatc acagtatggt gagcatgtta gggaaaggat ttggtgatgt cggtgaagct
     1321 aaaggcagca gcaccacagg ctcccagttc ttggagcaat tcaagactgc tcaggccctg
     1381 gctcagttgg cagctcagca ttctcaatct ggaaccacca ccacctcctc ttgggacatg
     1441 ggctccacca cacaatcccc atcgctggtg cagtatgatt tgaagaaccc aaatgattca
     1501 acagtgcaca gcccctttac aaagcgccag gctttcacct catcttcaac catgatggag
     1561 gtgttccttc aggagaagcc acctgcagtg gctacctcca ctgctgcacc tccaccccca
     1621 tcttctcctc tgccaagcaa atccacctcg gctccacaaa tgtctcctgg gtcttcagac
     1681 aaccaatcgt ccagccctca gccggctcag caaaaactga aacagcagaa gaaaaaagcc
     1741 tccttgactt ctaagattcc tgctctggct gtggagatgc ctggctcggc agatatctca
     1801 gggctaaatc tgcagtttgg ggcgttgcag tttgggtcag agcctgtcct ttctgattat
     1861 gagtccaccc ccaccacgag cgcctcttca agccaggctc caagtagcct ctataccagc
     1921 acggccagtg aatcttcatc cacaatttca tctaaccaga gtcaggagtc tggttatcag
     1981 agtggcccaa ttcagtcgac aacctatacc tcccaaaata atgctcaggg ccctctatat
     2041 gaacagagat ccacacagac tcggcggtac cccagctcca tctcttcatc accccaaaag
     2101 gacttgactc aggcaaagaa tggcttcagt tctgtgcagg ccacgcagtt acagaccacg
     2161 caatctgttg aaggtgctac aggctctgca gtgaaatctg actcaccttc cacttctagc
     2221 atcccccctc tcagtgaaac ggtatctgca gcttccttac tgacgacaac caatcagcac
     2281 tcatcttcct tgggtggctt gagccacaat gaggagattc caaatagtac caccacacaa
     2341 cacagcagca cgttatctac tcagcagaat accctttcgt catcaacatc ttctgggcgc
     2401 acttcgacat ccactctttt gcacacaagc gtggagagtg aggcgaatct tcattcttcc
     2461 tccagcactt tctccaccac atccagcaca gtctctgcac ctcccccagt ggtcagtgtc
     2521 tcttccagtc tcaatagtgg cagtagcttg ggcctcagcc taggcagcaa ctctaccgtc
     2581 acagcctcca ctcgaagctc agttgctaca acttcaggaa aagctcctcc caacctccct
     2641 cctggggtcc cgccgttgtt gcctaatcca tatattatgg ctccagggct gttacatgcc
     2701 tacccgccac aagtatatgg ttatgatgac ttgcagatgc ttcagacaag atttccattg
     2761 gattactaca gcatcccatt tcccacaccc accactccgc tgactgggag ggatggtagc
     2821 ctggccagca acccttattc tggtgacctc acaaagttcg gccgtgggga tgcctcctcc
     2881 ccggccccgg ccacaacctt ggcccagccc cagcagaacc agacacagac tcaccatacc
     2941 acgcagcaga cattcctgaa cccggcgctg cctcctggct acagttacac cagcctgcca
     3001 tactacacag gggttccggg cctccccagc accttccagt atgggcctgc tgtgttccct
     3061 gtggctccta cctcttccaa gcagcatggt gtgaatgtca gtgtgaatgc atcagccacc
     3121 cctttccaac agccaagtgg atatgggtct catggataca acactggaag aaaatatcca
     3181 cccccttaca agcatttctg gacggcagag agctaatttg gcccaaggct gggggctgtg
     3241 ttttgtgtgt gtgtgtaaat ttgcactgaa gtcttgtttc agaaaccaga ccactgagga
     3301 gagcctgctg agctgtggcc atggcctgcg tggcttgggg aaatgagttg gtggatacct
     3361 tctgggcttt tgaacttgcc cttcccccat ttccctctcc cccatgtgtc tgaccccgtc
     3421 ttacccattt cgaattcaag cggtgcagca cctcctccga agcaccaatg cacacacctg
     3481 ctgttgcttt tgatttctgg aaggcatgta gttccaactt gtaacaaaat atttgtagtc
     3541 ttcaataaac tgtggtattt ctttagctaa
//
LOCUS       XM_032651637            3465 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X42, mRNA.
ACCESSION   XM_032651637
VERSION     XM_032651637.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3465
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3465
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             127..3111
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X28"
                     /protein_id="XP_032507528.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALTKLVV
                     VRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEP
                     ANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVS
                     SVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSA
                     ISQPASGNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQ
                     SGTTTTSSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKP
                     PAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSK
                     IPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTAS
                     ESSSTISSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKD
                     LTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQ
                     HSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANL
                     HSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKA
                     PPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTP
                     LTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALP
                     PGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYG
                     SHGYNTGRKYPPPYKHFWTAES"
     misc_feature    274..387
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1645..1728
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gtcagtgtgg aggagactga ggtaaagttg ggagcgcagc ggcgttggcg gcggcggcgg
       61 cggcggcggc agcgcggcgg ggccggtatt ctaccttgta aatactgtta tttgtatata
      121 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      181 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      241 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      301 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      361 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      421 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      481 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      541 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      601 gttgtggttc gaggtcagga aaatggatta gatggcacca agagtggagg gccttctgga
      661 agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc tggtaggcgg
      721 ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta tgcagagccg
      781 gccaatactg atgataacta tggcaataat agcggcaata catggaacaa cactggccac
      841 tttgaaccag atgatgggac gagtgcatgg aggactgcaa cagaggagtg gggaactgaa
      901 gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt gtcgtcagtg
      961 cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct tgctgttctg
     1021 ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc atctcaggct
     1081 ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat atcacagcct
     1141 gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa aggatttggt
     1201 gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga gcaattcaag
     1261 actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac caccaccacc
     1321 tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta tgatttgaag
     1381 aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt cacctcatct
     1441 tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac ctccactgct
     1501 gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc acaaatgtct
     1561 cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa actgaaacag
     1621 cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga gatgcctggc
     1681 tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg gtcagagcct
     1741 gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca ggctccaagt
     1801 agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa ccagagtcag
     1861 gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca aaataatgct
     1921 cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag ctccatctct
     1981 tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt gcaggccacg
     2041 cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa atctgactca
     2101 ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc cttactgacg
     2161 acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga gattccaaat
     2221 agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct ttcgtcatca
     2281 acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga gagtgaggcg
     2341 aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc tgcacctccc
     2401 ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct cagcctaggc
     2461 agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc aggaaaagct
     2521 cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat tatggctcca
     2581 gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca gatgcttcag
     2641 acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac tccgctgact
     2701 gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa gttcggccgt
     2761 ggggatgcct cctccccggc cccggccaca accttggccc agccccagca gaaccagaca
     2821 cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc tggctacagt
     2881 tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt ccagtatggg
     2941 cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa tgtcagtgtg
     3001 aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg atacaacact
     3061 ggaagaaaat atccaccccc ttacaagcat ttctggacgg cagagagcta atttggccca
     3121 aggctggggg ctgtgttttg tgtgtgtgtg taaatttgca ctgaagtctt gtttcagaaa
     3181 ccagaccact gaggagagcc tgctgagctg tggccatggc ctgcgtggct tggggaaatg
     3241 agttggtgga taccttctgg gcttttgaac ttgcccttcc cccatttccc tctcccccat
     3301 gtgtctgacc ccgtcttacc catttcgaat tcaagcggtg cagcacctcc tccgaagcac
     3361 caatgcacac acctgctgtt gcttttgatt tctggaaggc atgtagttcc aacttgtaac
     3421 aaaatatttg tagtcttcaa taaactgtgg tatttcttta gctaa
//
LOCUS       XM_032651645            3444 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X43, mRNA.
ACCESSION   XM_032651645
VERSION     XM_032651645.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3444
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3444
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763489"
     CDS             124..3090
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X29"
                     /protein_id="XP_032507536.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRVRGQENGLDGTKSGGPSGRGTERGRR
                     GRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNSGNTWNNTGHFEPDDG
                     TRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPA
                     ENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPAS
                     GNTFSHHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTT
                     SSWDMGSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATS
                     TAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAV
                     EMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTI
                     SSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKN
                     GFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLG
                     GLSHNEEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSST
                     FSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPP
                     GVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDG
                     SLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYT
                     SLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNT
                     GRKYPPPYKHFWTAES"
     misc_feature    271..384
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1624..1707
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 agtgtggagg agactgaggt aaagttggga gcgcagcggc gttggcggcg gcggcggcgg
       61 cggcggcagc gcggcggggc cggtattcta ccttgtaaat actgttattt gtatatactg
      121 taaatgatga cgtcggtggg cactaaccga gcccggggaa actgggaacc acctcaaaac
      181 caaaatcaga cacagcacaa gcagcggccc caggccactg cggaacaaat tcgacttgca
      241 cagatgattt cggaccataa tgatgctgac tttgaggaaa aggtgaaaca attgattgat
      301 atcacaggca agaaccagga tgaatgtgtc attgctttgc atgactgcaa cggagatgtc
      361 aacagagcca tcaatgtact gctggaagga aacccagata cgcattcctg ggagatggtt
      421 gggaagaaga aaggagtctc aggacagaag gacagtggcc aaacggaatc caacgaggaa
      481 ggcaaagaaa atcgagaccg ggacagagac tatagtcggc gacgtgttcg aggtcaggaa
      541 aatggattag atggcaccaa gagtggaggg ccttctggaa gaggcacaga aagaggcaga
      601 agaggtcgtg gccgaggcag aggtggctct ggtaggcggg gaggaaggtt ttctgctcaa
      661 ggaatgggaa cctttaaccc agctgattat gcagagccgg ccaatactga tgataactat
      721 ggcaataata gcggcaatac atggaacaac actggccact ttgaaccaga tgatgggacg
      781 agacttgatt tcattggggt tgaggggtca aattatcccc gaaaatttga gactgctcct
      841 ggtgcatgga ggactgcaac agaggagtgg ggaactgaag attggaatga agatctttct
      901 gagaccaaga tcttcactgc ctctaatgtg tcgtcagtgc ctctgcctgc ggagaatgtg
      961 acaatcactg ctggtcagag aattgacctt gctgttctgt tggggaagac accatcttca
     1021 atggagaatg attcatctaa tctggatcca tctcaggctc cttctcttgc ccagcctctg
     1081 gtgttcagta actcgaagca gagtgccata tcacagcctg cttcagggaa cacgttttct
     1141 catcacagta tggtgagcat gttagggaaa ggatttggtg atgtcggtga agctaaaggc
     1201 agcagcacca caggctccca gttcttggag caattcaaga ctgctcaggc cctggctcag
     1261 ttggcagctc agcattctca atctggaacc accaccacct cctcttggga catgggctcc
     1321 accacacaat ccccatcgct ggtgcagtat gatttgaaga acccaaatga ttcaacagtg
     1381 cacagcccct ttacaaagcg ccaggctttc acctcatctt caaccatgat ggaggtgttc
     1441 cttcaggaga agccacctgc agtggctacc tccactgctg cacctccacc cccatcttct
     1501 cctctgccaa gcaaatccac ctcggctcca caaatgtctc ctgggtcttc agacaaccaa
     1561 tcgtccagcc ctcagccggc tcagcaaaaa ctgaaacagc agaagaaaaa agcctccttg
     1621 acttctaaga ttcctgctct ggctgtggag atgcctggct cggcagatat ctcagggcta
     1681 aatctgcagt ttggggcgtt gcagtttggg tcagagcctg tcctttctga ttatgagtcc
     1741 acccccacca cgagcgcctc ttcaagccag gctccaagta gcctctatac cagcacggcc
     1801 agtgaatctt catccacaat ttcatctaac cagagtcagg agtctggtta tcagagtggc
     1861 ccaattcagt cgacaaccta tacctcccaa aataatgctc agggccctct atatgaacag
     1921 agatccacac agactcggcg gtaccccagc tccatctctt catcacccca aaaggacttg
     1981 actcaggcaa agaatggctt cagttctgtg caggccacgc agttacagac cacgcaatct
     2041 gttgaaggtg ctacaggctc tgcagtgaaa tctgactcac cttccacttc tagcatcccc
     2101 cctctcagtg aaacggtatc tgcagcttcc ttactgacga caaccaatca gcactcatct
     2161 tccttgggtg gcttgagcca caatgaggag attccaaata gtaccaccac acaacacagc
     2221 agcacgttat ctactcagca gaataccctt tcgtcatcaa catcttctgg gcgcacttcg
     2281 acatccactc ttttgcacac aagcgtggag agtgaggcga atcttcattc ttcctccagc
     2341 actttctcca ccacatccag cacagtctct gcacctcccc cagtggtcag tgtctcttcc
     2401 agtctcaata gtggcagtag cttgggcctc agcctaggca gcaactctac cgtcacagcc
     2461 tccactcgaa gctcagttgc tacaacttca ggaaaagctc ctcccaacct ccctcctggg
     2521 gtcccgccgt tgttgcctaa tccatatatt atggctccag ggctgttaca tgcctacccg
     2581 ccacaagtat atggttatga tgacttgcag atgcttcaga caagatttcc attggattac
     2641 tacagcatcc catttcccac acccaccact ccgctgactg ggagggatgg tagcctggcc
     2701 agcaaccctt attctggtga cctcacaaag ttcggccgtg gggatgcctc ctccccggcc
     2761 ccggccacaa ccttggccca gccccagcag aaccagacac agactcacca taccacgcag
     2821 cagacattcc tgaacccggc gctgcctcct ggctacagtt acaccagcct gccatactac
     2881 acaggggttc cgggcctccc cagcaccttc cagtatgggc ctgctgtgtt ccctgtggct
     2941 cctacctctt ccaagcagca tggtgtgaat gtcagtgtga atgcatcagc cacccctttc
     3001 caacagccaa gtggatatgg gtctcatgga tacaacactg gaagaaaata tccaccccct
     3061 tacaagcatt tctggacggc agagagctaa tttggcccaa ggctgggggc tgtgttttgt
     3121 gtgtgtgtgt aaatttgcac tgaagtcttg tttcagaaac cagaccactg aggagagcct
     3181 gctgagctgt ggccatggcc tgcgtggctt ggggaaatga gttggtggat accttctggg
     3241 cttttgaact tgcccttccc ccatttccct ctcccccatg tgtctgaccc cgtcttaccc
     3301 atttcgaatt caagcggtgc agcacctcct ccgaagcacc aatgcacaca cctgctgttg
     3361 cttttgattt ctggaaggca tgtagttcca acttgtaaca aaatatttgt agtcttcaat
     3421 aaactgtggt atttctttag ctaa
//
LOCUS       XM_032651654            3435 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X44, mRNA.
ACCESSION   XM_032651654
VERSION     XM_032651654.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3435
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3435
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 14 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             130..3081
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X30"
                     /protein_id="XP_032507545.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYP
                     PPYKHFWTAES"
     misc_feature    277..390
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1615..1698
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 ggtgtcagtg tggaggagac tgaggtaaag ttgggagcgc agcggcgttg gcggcggcgg
       61 cggcggcggc ggcagcgcgg cggggccggt attctacctt gtaaatactg ttatttgtat
      121 atactgtaaa tgatgacgtc ggtgggcact aaccgagccc ggggaaactg ggaaccacct
      181 caaaaccaaa atcagacaca gcacaagcag cggccccagg ccactgcgga acaaattcga
      241 cttgcacaga tgatttcgga ccataatgat gctgactttg aggaaaaggt gaaacaattg
      301 attgatatca caggcaagaa ccaggatgaa tgtgtcattg ctttgcatga ctgcaacgga
      361 gatgtcaaca gagccatcaa tgtactgctg gaaggaaacc cagatacgca ttcctgggag
      421 atggttggga agaagaaagg agtctcagga cagaaggaca gtggccaaac ggaatccaac
      481 gaggaaggca aagaaaatcg agaccgggac agagactata gtcggcgacg tggtgggcca
      541 ccaagacggg ggagaggtgc cagccgcgga cgagagtttc gaggtcagga aaatggatta
      601 gatggcacca agagtggagg gccttctgga agaggcacag aaagaggcag aagaggtcgt
      661 ggccgaggca gaggtggctc tggtaggcgg ggaggaaggt tttctgctca aggaatggga
      721 acctttaacc cagctgatta tgcagagccg gccaatactg atgataacta tggcaataat
      781 agcggcaata catggaacaa cactggccac tttgaaccag atgatgggac gagtgcatgg
      841 aggactgcaa cagaggagtg gggaactgaa gattggaatg aagatctttc tgagaccaag
      901 atcttcactg cctctaatgt gtcgtcagtg cctctgcctg cggagaatgt gacaatcact
      961 gctggtcaga gaattgacct tgctgttctg ttggggaaga caccatcttc aatggagaat
     1021 gattcatcta atctggatcc atctcaggct ccttctcttg cccagcctct ggtgttcagt
     1081 aactcgaagc agagtgccat atcacagcct gcttcaggga acacgttttc tcatcacagt
     1141 atggtgagca tgttagggaa aggatttggt gatgtcggtg aagctaaagg cagcagcacc
     1201 acaggctccc agttcttgga gcaattcaag actgctcagg ccctggctca gttggcagct
     1261 cagcattctc aatctggaac caccaccacc tcctcttggg acatgggctc caccacacaa
     1321 tccccatcgc tggtgcagta tgatttgaag aacccaaatg attcaacagt gcacagcccc
     1381 tttacaaagc gccaggcttt cacctcatct tcaaccatga tggaggtgtt ccttcaggag
     1441 aagccacctg cagtggctac ctccactgct gcacctccac ccccatcttc tcctctgcca
     1501 agcaaatcca cctcggctcc acaaatgtct cctgggtctt cagacaacca atcgtccagc
     1561 cctcagccgg ctcagcaaaa actgaaacag cagaagaaaa aagcctcctt gacttctaag
     1621 attcctgctc tggctgtgga gatgcctggc tcggcagata tctcagggct aaatctgcag
     1681 tttggggcgt tgcagtttgg gtcagagcct gtcctttctg attatgagtc cacccccacc
     1741 acgagcgcct cttcaagcca ggctccaagt agcctctata ccagcacggc cagtgaatct
     1801 tcatccacaa tttcatctaa ccagagtcag gagtctggtt atcagagtgg cccaattcag
     1861 tcgacaacct atacctccca aaataatgct cagggccctc tatatgaaca gagatccaca
     1921 cagactcggc ggtaccccag ctccatctct tcatcacccc aaaaggactt gactcaggca
     1981 aagaatggct tcagttctgt gcaggccacg cagttacaga ccacgcaatc tgttgaaggt
     2041 gctacaggct ctgcagtgaa atctgactca ccttccactt ctagcatccc ccctctcagt
     2101 gaaacggtat ctgcagcttc cttactgacg acaaccaatc agcactcatc ttccttgggt
     2161 ggcttgagcc acaatgagga gattccaaat agtaccacca cacaacacag cagcacgtta
     2221 tctactcagc agaataccct ttcgtcatca acatcttctg ggcgcacttc gacatccact
     2281 cttttgcaca caagcgtgga gagtgaggcg aatcttcatt cttcctccag cactttctcc
     2341 accacatcca gcacagtctc tgcacctccc ccagtggtca gtgtctcttc cagtctcaat
     2401 agtggcagta gcttgggcct cagcctaggc agcaactcta ccgtcacagc ctccactcga
     2461 agctcagttg ctacaacttc aggaaaagct cctcccaacc tccctcctgg ggtcccgccg
     2521 ttgttgccta atccatatat tatggctcca gggctgttac atgcctaccc gccacaagta
     2581 tatggttatg atgacttgca gatgcttcag acaagatttc cattggatta ctacagcatc
     2641 ccatttccca cacccaccac tccgctgact gggagggatg gtagcctggc cagcaaccct
     2701 tattctggtg acctcacaaa gttcggccgt ggggatgcct cctccccggc cccggccaca
     2761 accttggccc agccccagca gaaccagaca cagactcacc ataccacgca gcagacattc
     2821 ctgaacccgg cgctgcctcc tggctacagt tacaccagcc tgccatacta cacaggggtt
     2881 ccgggcctcc ccagcacctt ccagtatggg cctgctgtgt tccctgtggc tcctacctct
     2941 tccaagcagc atggtgtgaa tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca
     3001 agtggatatg ggtctcatgg atacaacact ggaagaaaat atccaccccc ttacaagcat
     3061 ttctggacgg cagagagcta atttggccca aggctggggg ctgtgttttg tgtgtgtgtg
     3121 taaatttgca ctgaagtctt gtttcagaaa ccagaccact gaggagagcc tgctgagctg
     3181 tggccatggc ctgcgtggct tggggaaatg agttggtgga taccttctgg gcttttgaac
     3241 ttgcccttcc cccatttccc tctcccccat gtgtctgacc ccgtcttacc catttcgaat
     3301 tcaagcggtg cagcacctcc tccgaagcac caatgcacac acctgctgtt gcttttgatt
     3361 tctggaaggc atgtagttcc aacttgtaac aaaatatttg tagtcttcaa taaactgtgg
     3421 tatttcttta gctaa
//
LOCUS       XM_032651662            3413 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X45, mRNA.
ACCESSION   XM_032651662
VERSION     XM_032651662.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3413
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 13 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             108..3059
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X30"
                     /protein_id="XP_032507553.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYP
                     PPYKHFWTAES"
     misc_feature    255..368
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1593..1676
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 aggagggaac cttatatcac gtgacagggg cggcgcggcc cggggtgtca gtgtggagga
       61 gactgagtat tctaccttgt aaatactgtt atttgtatat actgtaaatg atgacgtcgg
      121 tgggcactaa ccgagcccgg ggaaactggg aaccacctca aaaccaaaat cagacacagc
      181 acaagcagcg gccccaggcc actgcggaac aaattcgact tgcacagatg atttcggacc
      241 ataatgatgc tgactttgag gaaaaggtga aacaattgat tgatatcaca ggcaagaacc
      301 aggatgaatg tgtcattgct ttgcatgact gcaacggaga tgtcaacaga gccatcaatg
      361 tactgctgga aggaaaccca gatacgcatt cctgggagat ggttgggaag aagaaaggag
      421 tctcaggaca gaaggacagt ggccaaacgg aatccaacga ggaaggcaaa gaaaatcgag
      481 accgggacag agactatagt cggcgacgtg gtgggccacc aagacggggg agaggtgcca
      541 gccgcggacg agagtttcga ggtcaggaaa atggattaga tggcaccaag agtggagggc
      601 cttctggaag aggcacagaa agaggcagaa gaggtcgtgg ccgaggcaga ggtggctctg
      661 gtaggcgggg aggaaggttt tctgctcaag gaatgggaac ctttaaccca gctgattatg
      721 cagagccggc caatactgat gataactatg gcaataatag cggcaataca tggaacaaca
      781 ctggccactt tgaaccagat gatgggacga gtgcatggag gactgcaaca gaggagtggg
      841 gaactgaaga ttggaatgaa gatctttctg agaccaagat cttcactgcc tctaatgtgt
      901 cgtcagtgcc tctgcctgcg gagaatgtga caatcactgc tggtcagaga attgaccttg
      961 ctgttctgtt ggggaagaca ccatcttcaa tggagaatga ttcatctaat ctggatccat
     1021 ctcaggctcc ttctcttgcc cagcctctgg tgttcagtaa ctcgaagcag agtgccatat
     1081 cacagcctgc ttcagggaac acgttttctc atcacagtat ggtgagcatg ttagggaaag
     1141 gatttggtga tgtcggtgaa gctaaaggca gcagcaccac aggctcccag ttcttggagc
     1201 aattcaagac tgctcaggcc ctggctcagt tggcagctca gcattctcaa tctggaacca
     1261 ccaccacctc ctcttgggac atgggctcca ccacacaatc cccatcgctg gtgcagtatg
     1321 atttgaagaa cccaaatgat tcaacagtgc acagcccctt tacaaagcgc caggctttca
     1381 cctcatcttc aaccatgatg gaggtgttcc ttcaggagaa gccacctgca gtggctacct
     1441 ccactgctgc acctccaccc ccatcttctc ctctgccaag caaatccacc tcggctccac
     1501 aaatgtctcc tgggtcttca gacaaccaat cgtccagccc tcagccggct cagcaaaaac
     1561 tgaaacagca gaagaaaaaa gcctccttga cttctaagat tcctgctctg gctgtggaga
     1621 tgcctggctc ggcagatatc tcagggctaa atctgcagtt tggggcgttg cagtttgggt
     1681 cagagcctgt cctttctgat tatgagtcca cccccaccac gagcgcctct tcaagccagg
     1741 ctccaagtag cctctatacc agcacggcca gtgaatcttc atccacaatt tcatctaacc
     1801 agagtcagga gtctggttat cagagtggcc caattcagtc gacaacctat acctcccaaa
     1861 ataatgctca gggccctcta tatgaacaga gatccacaca gactcggcgg taccccagct
     1921 ccatctcttc atcaccccaa aaggacttga ctcaggcaaa gaatggcttc agttctgtgc
     1981 aggccacgca gttacagacc acgcaatctg ttgaaggtgc tacaggctct gcagtgaaat
     2041 ctgactcacc ttccacttct agcatccccc ctctcagtga aacggtatct gcagcttcct
     2101 tactgacgac aaccaatcag cactcatctt ccttgggtgg cttgagccac aatgaggaga
     2161 ttccaaatag taccaccaca caacacagca gcacgttatc tactcagcag aatacccttt
     2221 cgtcatcaac atcttctggg cgcacttcga catccactct tttgcacaca agcgtggaga
     2281 gtgaggcgaa tcttcattct tcctccagca ctttctccac cacatccagc acagtctctg
     2341 cacctccccc agtggtcagt gtctcttcca gtctcaatag tggcagtagc ttgggcctca
     2401 gcctaggcag caactctacc gtcacagcct ccactcgaag ctcagttgct acaacttcag
     2461 gaaaagctcc tcccaacctc cctcctgggg tcccgccgtt gttgcctaat ccatatatta
     2521 tggctccagg gctgttacat gcctacccgc cacaagtata tggttatgat gacttgcaga
     2581 tgcttcagac aagatttcca ttggattact acagcatccc atttcccaca cccaccactc
     2641 cgctgactgg gagggatggt agcctggcca gcaaccctta ttctggtgac ctcacaaagt
     2701 tcggccgtgg ggatgcctcc tccccggccc cggccacaac cttggcccag ccccagcaga
     2761 accagacaca gactcaccat accacgcagc agacattcct gaacccggcg ctgcctcctg
     2821 gctacagtta caccagcctg ccatactaca caggggttcc gggcctcccc agcaccttcc
     2881 agtatgggcc tgctgtgttc cctgtggctc ctacctcttc caagcagcat ggtgtgaatg
     2941 tcagtgtgaa tgcatcagcc acccctttcc aacagccaag tggatatggg tctcatggat
     3001 acaacactgg aagaaaatat ccaccccctt acaagcattt ctggacggca gagagctaat
     3061 ttggcccaag gctgggggct gtgttttgtg tgtgtgtgta aatttgcact gaagtcttgt
     3121 ttcagaaacc agaccactga ggagagcctg ctgagctgtg gccatggcct gcgtggcttg
     3181 gggaaatgag ttggtggata ccttctgggc ttttgaactt gcccttcccc catttccctc
     3241 tcccccatgt gtctgacccc gtcttaccca tttcgaattc aagcggtgca gcacctcctc
     3301 cgaagcacca atgcacacac ctgctgttgc ttttgatttc tggaaggcat gtagttccaa
     3361 cttgtaacaa aatatttgta gtcttcaata aactgtggta tttctttagc taa
//
LOCUS       XM_032651669            3438 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X46, mRNA.
ACCESSION   XM_032651669
VERSION     XM_032651669.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3438
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 14 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             133..3084
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X30"
                     /protein_id="XP_032507560.1"
                     /db_xref="GeneID:116763489"
                     /translation="MMTSVGTNRARGNWEPPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDSGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNNS
                     GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
                     TAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFS
                     HHSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDM
                     GSTTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPP
                     PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS
                     ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
                     QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
                     QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHN
                     EEIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
                     STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
                     LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
                     PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
                     TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYP
                     PPYKHFWTAES"
     misc_feature    280..393
                     /gene="UBAP2L"
                     /note="UBA domain found in ubiquitin-associated protein 2
                     (UBAP-2) like proteins; Region: UBA_UBP2_like; cd14277"
                     /db_xref="CDD:270463"
     misc_feature    1618..1701
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gcagccgtag tggggggggc catgcggcta gagcctgaga cgggggagag cgagaaagag
       61 cgcgagcgag ctaggcctgg gccccgcctg agtattctac cttgtaaata ctgttatttg
      121 tatatactgt aaatgatgac gtcggtgggc actaaccgag cccggggaaa ctgggaacca
      181 cctcaaaacc aaaatcagac acagcacaag cagcggcccc aggccactgc ggaacaaatt
      241 cgacttgcac agatgatttc ggaccataat gatgctgact ttgaggaaaa ggtgaaacaa
      301 ttgattgata tcacaggcaa gaaccaggat gaatgtgtca ttgctttgca tgactgcaac
      361 ggagatgtca acagagccat caatgtactg ctggaaggaa acccagatac gcattcctgg
      421 gagatggttg ggaagaagaa aggagtctca ggacagaagg acagtggcca aacggaatcc
      481 aacgaggaag gcaaagaaaa tcgagaccgg gacagagact atagtcggcg acgtggtggg
      541 ccaccaagac gggggagagg tgccagccgc ggacgagagt ttcgaggtca ggaaaatgga
      601 ttagatggca ccaagagtgg agggccttct ggaagaggca cagaaagagg cagaagaggt
      661 cgtggccgag gcagaggtgg ctctggtagg cggggaggaa ggttttctgc tcaaggaatg
      721 ggaaccttta acccagctga ttatgcagag ccggccaata ctgatgataa ctatggcaat
      781 aatagcggca atacatggaa caacactggc cactttgaac cagatgatgg gacgagtgca
      841 tggaggactg caacagagga gtggggaact gaagattgga atgaagatct ttctgagacc
      901 aagatcttca ctgcctctaa tgtgtcgtca gtgcctctgc ctgcggagaa tgtgacaatc
      961 actgctggtc agagaattga ccttgctgtt ctgttgggga agacaccatc ttcaatggag
     1021 aatgattcat ctaatctgga tccatctcag gctccttctc ttgcccagcc tctggtgttc
     1081 agtaactcga agcagagtgc catatcacag cctgcttcag ggaacacgtt ttctcatcac
     1141 agtatggtga gcatgttagg gaaaggattt ggtgatgtcg gtgaagctaa aggcagcagc
     1201 accacaggct cccagttctt ggagcaattc aagactgctc aggccctggc tcagttggca
     1261 gctcagcatt ctcaatctgg aaccaccacc acctcctctt gggacatggg ctccaccaca
     1321 caatccccat cgctggtgca gtatgatttg aagaacccaa atgattcaac agtgcacagc
     1381 ccctttacaa agcgccaggc tttcacctca tcttcaacca tgatggaggt gttccttcag
     1441 gagaagccac ctgcagtggc tacctccact gctgcacctc cacccccatc ttctcctctg
     1501 ccaagcaaat ccacctcggc tccacaaatg tctcctgggt cttcagacaa ccaatcgtcc
     1561 agccctcagc cggctcagca aaaactgaaa cagcagaaga aaaaagcctc cttgacttct
     1621 aagattcctg ctctggctgt ggagatgcct ggctcggcag atatctcagg gctaaatctg
     1681 cagtttgggg cgttgcagtt tgggtcagag cctgtccttt ctgattatga gtccaccccc
     1741 accacgagcg cctcttcaag ccaggctcca agtagcctct ataccagcac ggccagtgaa
     1801 tcttcatcca caatttcatc taaccagagt caggagtctg gttatcagag tggcccaatt
     1861 cagtcgacaa cctatacctc ccaaaataat gctcagggcc ctctatatga acagagatcc
     1921 acacagactc ggcggtaccc cagctccatc tcttcatcac cccaaaagga cttgactcag
     1981 gcaaagaatg gcttcagttc tgtgcaggcc acgcagttac agaccacgca atctgttgaa
     2041 ggtgctacag gctctgcagt gaaatctgac tcaccttcca cttctagcat cccccctctc
     2101 agtgaaacgg tatctgcagc ttccttactg acgacaacca atcagcactc atcttccttg
     2161 ggtggcttga gccacaatga ggagattcca aatagtacca ccacacaaca cagcagcacg
     2221 ttatctactc agcagaatac cctttcgtca tcaacatctt ctgggcgcac ttcgacatcc
     2281 actcttttgc acacaagcgt ggagagtgag gcgaatcttc attcttcctc cagcactttc
     2341 tccaccacat ccagcacagt ctctgcacct cccccagtgg tcagtgtctc ttccagtctc
     2401 aatagtggca gtagcttggg cctcagccta ggcagcaact ctaccgtcac agcctccact
     2461 cgaagctcag ttgctacaac ttcaggaaaa gctcctccca acctccctcc tggggtcccg
     2521 ccgttgttgc ctaatccata tattatggct ccagggctgt tacatgccta cccgccacaa
     2581 gtatatggtt atgatgactt gcagatgctt cagacaagat ttccattgga ttactacagc
     2641 atcccatttc ccacacccac cactccgctg actgggaggg atggtagcct ggccagcaac
     2701 ccttattctg gtgacctcac aaagttcggc cgtggggatg cctcctcccc ggccccggcc
     2761 acaaccttgg cccagcccca gcagaaccag acacagactc accataccac gcagcagaca
     2821 ttcctgaacc cggcgctgcc tcctggctac agttacacca gcctgccata ctacacaggg
     2881 gttccgggcc tccccagcac cttccagtat gggcctgctg tgttccctgt ggctcctacc
     2941 tcttccaagc agcatggtgt gaatgtcagt gtgaatgcat cagccacccc tttccaacag
     3001 ccaagtggat atgggtctca tggatacaac actggaagaa aatatccacc cccttacaag
     3061 catttctgga cggcagagag ctaatttggc ccaaggctgg gggctgtgtt ttgtgtgtgt
     3121 gtgtaaattt gcactgaagt cttgtttcag aaaccagacc actgaggaga gcctgctgag
     3181 ctgtggccat ggcctgcgtg gcttggggaa atgagttggt ggataccttc tgggcttttg
     3241 aacttgccct tcccccattt ccctctcccc catgtgtctg accccgtctt acccatttcg
     3301 aattcaagcg gtgcagcacc tcctccgaag caccaatgca cacacctgct gttgcttttg
     3361 atttctggaa ggcatgtagt tccaacttgt aacaaaatat ttgtagtctt caataaactg
     3421 tggtatttct ttagctaa
//
LOCUS       XM_032651674            4806 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X47, mRNA.
ACCESSION   XM_032651674
VERSION     XM_032651674.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4806
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4806
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             1472..4261
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X31"
                     /protein_id="XP_032507565.1"
                     /db_xref="GeneID:116763489"
                     /translation="MGTFNPADYAEPANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFI
                     GVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTIT
                     AGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFSH
                     HSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDMG
                     STTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPPP
                     PSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGSA
                     DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQSQ
                     ESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQ
                     ATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHNE
                     EIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSS
                     TVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLL
                     PNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNP
                     YSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYT
                     GVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTS
                     SNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKP
                     QTNKSAYNSYSWGAN"
     misc_feature    2432..2515
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 aagcgcaggt gagtgggtgg agaatgagga ccgggaactg ctcaagagga gggtctctac
       61 tgggtcagag gcgacagcag gaaatggggt gggggaatct cctcaccagg ctcccgtagg
      121 ccatcaccag cacgacattc acgccggaca gccagttact gccggacgcc atggcctccc
      181 caccccgcgc agaaccgctc cggtttaccc cgctgccctg cctcgtcagc ccgggctgcg
      241 ccgaggcaac ggcgcctggg ttccctgaag cgccccggcc atttccttac ggggaaagac
      301 caaggctgac cgggcctgaa aacatggcgg acgggggggt ggttaggaaa gaagaacgac
      361 gccttcccgc ttccccccag cacgtgactc aggcacgcaa tgacaaccgg gaccgacgag
      421 tgcggagacg cggaactacg ccatattcta ccttgtaaat actgttattt gtatatactg
      481 taaatgatga cgtcggtggg cactaaccga gcccggggaa actgggaacc acctcaaaac
      541 caaaatcaga cacagcacaa gcagcggccc caggccactg cggaacaaat tcgacttgca
      601 cagatgattt cggaccataa tgatgctgac tttgaggaaa aggtgaaaca attgattgat
      661 atcacaggca agaaccagga tgaatgtgtc attgctttgc atgactgcaa cggagatgtc
      721 aacagagcca tcaatgtact gctggaagga aacccagata cgcattcctg ggagatggtt
      781 gggaagaaga aaggagtctc aggacagaag gacagtggcc aaacggaatc caacgaggaa
      841 ggcaaagaaa atcgagaccg ggacagagac tatagtcggc gacgtggtgg gccaccaaga
      901 cgggggagag gtgccagccg cggacgagag tgtatgcatg gggctttaac aaaactagtt
      961 gtgggttagt aatgtctaga cttgagggat gtcagggctc tgcgaggctg gatctagtaa
     1021 ccattatatc atccttttga tttttcttaa aatcatctgt tctgagacct tggcatttct
     1081 tgcatgtagc cttttctagc aacagccacc agttgagcat gaagttacct tgtagccgtt
     1141 tgtaaaattg tttgactagt aaccattccc tagtaaccat catgttccat ccttccagct
     1201 cattttctct tctttgtttt tgtctcccca ccaccatgta tacataccat ttatgtacat
     1261 actttctatt cactttgctc tggccatctg tggtgttttg ttttgttttg ttttgttttg
     1321 tttttaaatt tcagttcgag gtcaggaaaa tggattagat ggcaccaaga gtggagggcc
     1381 ttctggaaga ggcacagaaa gaggcagaag aggtcgtggc cgaggcagag gtggctctgg
     1441 taggcgggga ggaaggtttt ctgctcaagg aatgggaacc tttaacccag ctgattatgc
     1501 agagccggcc aatactgatg ataactatgg caataatagc ggcaatacat ggaacaacac
     1561 tggccacttt gaaccagatg atgggacgag acttgatttc attggggttg aggggtcaaa
     1621 ttatccccga aaatttgaga ctgctcctgg tgcatggagg actgcaacag aggagtgggg
     1681 aactgaagat tggaatgaag atctttctga gaccaagatc ttcactgcct ctaatgtgtc
     1741 gtcagtgcct ctgcctgcgg agaatgtgac aatcactgct ggtcagagaa ttgaccttgc
     1801 tgttctgttg gggaagacac catcttcaat ggagaatgat tcatctaatc tggatccatc
     1861 tcaggctcct tctcttgccc agcctctggt gttcagtaac tcgaagcaga gtgccatatc
     1921 acagcctgct tcagggaaca cgttttctca tcacagtatg gtgagcatgt tagggaaagg
     1981 atttggtgat gtcggtgaag ctaaaggcag cagcaccaca ggctcccagt tcttggagca
     2041 attcaagact gctcaggccc tggctcagtt ggcagctcag cattctcaat ctggaaccac
     2101 caccacctcc tcttgggaca tgggctccac cacacaatcc ccatcgctgg tgcagtatga
     2161 tttgaagaac ccaaatgatt caacagtgca cagccccttt acaaagcgcc aggctttcac
     2221 ctcatcttca accatgatgg aggtgttcct tcaggagaag ccacctgcag tggctacctc
     2281 cactgctgca cctccacccc catcttctcc tctgccaagc aaatccacct cggctccaca
     2341 aatgtctcct gggtcttcag acaaccaatc gtccagccct cagccggctc agcaaaaact
     2401 gaaacagcag aagaaaaaag cctccttgac ttctaagatt cctgctctgg ctgtggagat
     2461 gcctggctcg gcagatatct cagggctaaa tctgcagttt ggggcgttgc agtttgggtc
     2521 agagcctgtc ctttctgatt atgagtccac ccccaccacg agcgcctctt caagccaggc
     2581 tccaagtagc ctctatacca gcacggccag tgaatcttca tccacaattt catctaacca
     2641 gagtcaggag tctggttatc agagtggccc aattcagtcg acaacctata cctcccaaaa
     2701 taatgctcag ggccctctat atgaacagag atccacacag actcggcggt accccagctc
     2761 catctcttca tcaccccaaa aggacttgac tcaggcaaag aatggcttca gttctgtgca
     2821 ggccacgcag ttacagacca cgcaatctgt tgaaggtgct acaggctctg cagtgaaatc
     2881 tgactcacct tccacttcta gcatcccccc tctcagtgaa acggtatctg cagcttcctt
     2941 actgacgaca accaatcagc actcatcttc cttgggtggc ttgagccaca atgaggagat
     3001 tccaaatagt accaccacac aacacagcag cacgttatct actcagcaga ataccctttc
     3061 gtcatcaaca tcttctgggc gcacttcgac atccactctt ttgcacacaa gcgtggagag
     3121 tgaggcgaat cttcattctt cctccagcac tttctccacc acatccagca cagtctctgc
     3181 acctccccca gtggtcagtg tctcttccag tctcaatagt ggcagtagct tgggcctcag
     3241 cctaggcagc aactctaccg tcacagcctc cactcgaagc tcagttgcta caacttcagg
     3301 aaaagctcct cccaacctcc ctcctggggt cccgccgttg ttgcctaatc catatattat
     3361 ggctccaggg ctgttacatg cctacccgcc acaagtatat ggttatgatg acttgcagat
     3421 gcttcagaca agatttccat tggattacta cagcatccca tttcccacac ccaccactcc
     3481 gctgactggg agggatggta gcctggccag caacccttat tctggtgacc tcacaaagtt
     3541 cggccgtggg gatgcctcct ccccggcccc ggccacaacc ttggcccagc cccagcagaa
     3601 ccagacacag actcaccata ccacgcagca gacattcctg aacccggcgc tgcctcctgg
     3661 ctacagttac accagcctgc catactacac aggggttccg ggcctcccca gcaccttcca
     3721 gtatgggcct gctgtgttcc ctgtggctcc tacctcttcc aagcagcatg gtgtgaatgt
     3781 cagtgtgaat gcatcagcca cccctttcca acagccaagt ggatatgggt ctcatggata
     3841 caacactggt gtatcagtca cctccagtaa cacaggcgtg ccagatatct cgggttctgt
     3901 gtactccaaa acccagcagt cctttgagaa acaaggtttt cattccggta ctcctgctgc
     3961 ctccttcaac ttgccttcag ccctaggaag tggggggccc atcaatccgg ccacagctgc
     4021 tgcctaccca cctgccccct ttatgcacat tctgaccccc catcagcaac cgcactccca
     4081 gatacttcac catcacctgc agcaggatgg ccagctacca tatttgcaga tgattctctg
     4141 ttgccagcgc cagcaggagg agcagacggg cagcgggcaa cgtagccaga ccagctccat
     4201 cccgcagaag ccccagacca acaagtctgc ctacaacagc tacagctggg gggccaactg
     4261 aggccctgac tctcttctcc cggtcccatc ttctgagagg gcttctcagc ctggcaacta
     4321 tggaaacagc atcaaagaga gaaaggaatg tgggggggtt ccactgcccc cacccccagc
     4381 ggcccatccc atgcctcagc ttcatgtctg tcccattccc ataccatccc cactctgttg
     4441 tatgtattat aggatttgta ttttctcctt ttttttttct tcctttcctc tcctcctccc
     4501 cccttgcatt caagattatg aaactttgct gtgggccctg ccctcccttt tcctcctcct
     4561 gttcaccctg gtggtgtgtg ggtgaggtag ggagggggga cccccaaata tatatcagcc
     4621 caacagccct aagtctcctc ctttattatt aggaaacaaa acaacaacaa caaaaaaatg
     4681 gcgtcatgaa tatgaacagc attgtcagat gaattagttg aagtgttttt tttttttttg
     4741 tactgtgtcc tcaaatttaa tggattaatg tgtcttgtat atataaaaag aaaacctcta
     4801 ccttca
//
LOCUS       XM_032651680            4364 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X48, mRNA.
ACCESSION   XM_032651680
VERSION     XM_032651680.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4364
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4364
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             1081..3819
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X32"
                     /protein_id="XP_032507571.1"
                     /db_xref="GeneID:116763489"
                     /translation="MGTFNPADYAEPANTDDNYGNNSGNTWNNTGHFEPDDGTRLDFI
                     GVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTIT
                     AGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFSH
                     HSMVSMLGKGFGDVGEAKGSSTTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDMG
                     STTQSPSLVQYDLKNPNDSTVHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPPP
                     PSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGSA
                     DISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQSQ
                     ESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQ
                     ATQLQTTQSVEGATGSAVKSDSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHNE
                     EIPNSTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSS
                     TVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLL
                     PNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNP
                     YSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYT
                     GVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTS
                     SNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAP
                     FMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    2041..2124
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 atcacgtgac aggggcggcg cggcccgggg tgtcagtgtg gaggagactg agtattctac
       61 cttgtaaata ctgttatttg tatatactgt aaatgatgac gtcggtgggc actaaccgag
      121 cccggggaaa ctgggaacca cctcaaaacc aaaatcagac acagcacaag cagcggcccc
      181 aggccactgc ggaacaaatt cgacttgcac agatgatttc ggaccataat gatgctgact
      241 ttgaggaaaa ggtgaaacaa ttgattgata tcacaggcaa gaaccaggat gaatgtgtca
      301 ttgctttgca tgactgcaac ggagatgtca acagagccat caatgtactg ctggaaggaa
      361 acccagatac gcattcctgg gagatggttg ggaagaagaa aggagtctca ggacagaagg
      421 acagtggcca aacggaatcc aacgaggaag gcaaagaaaa tcgagaccgg gacagagact
      481 atagtcggcg acgtggtggg ccaccaagac gggggagagg tgccagccgc ggacgagagt
      541 gtatgcatgg ggctttaaca aaactagttg tgggttagta atgtctagac ttgagggatg
      601 tcagggctct gcgaggctgg atctagtaac cattatatca tccttttgat ttttcttaaa
      661 atcatctgtt ctgagacctt ggcatttctt gcatgtagcc ttttctagca acagccacca
      721 gttgagcatg aagttacctt gtagccgttt gtaaaattgt ttgactagta accattccct
      781 agtaaccatc atgttccatc cttccagctc attttctctt ctttgttttt gtctccccac
      841 caccatgtat acataccatt tatgtacata ctttctattc actttgctct ggccatctgt
      901 ggtgttttgt tttgttttgt tttgttttgt ttttaaattt cagttcgagg tcaggaaaat
      961 ggattagatg gcaccaagag tggagggcct tctggaagag gcacagaaag aggcagaaga
     1021 ggtcgtggcc gaggcagagg tggctctggt aggcggggag gaaggttttc tgctcaagga
     1081 atgggaacct ttaacccagc tgattatgca gagccggcca atactgatga taactatggc
     1141 aataatagcg gcaatacatg gaacaacact ggccactttg aaccagatga tgggacgaga
     1201 cttgatttca ttggggttga ggggtcaaat tatccccgaa aatttgagac tgctcctggt
     1261 gcatggagga ctgcaacaga ggagtgggga actgaagatt ggaatgaaga tctttctgag
     1321 accaagatct tcactgcctc taatgtgtcg tcagtgcctc tgcctgcgga gaatgtgaca
     1381 atcactgctg gtcagagaat tgaccttgct gttctgttgg ggaagacacc atcttcaatg
     1441 gagaatgatt catctaatct ggatccatct caggctcctt ctcttgccca gcctctggtg
     1501 ttcagtaact cgaagcagag tgccatatca cagcctgctt cagggaacac gttttctcat
     1561 cacagtatgg tgagcatgtt agggaaagga tttggtgatg tcggtgaagc taaaggcagc
     1621 agcaccacag gctcccagtt cttggagcaa ttcaagactg ctcaggccct ggctcagttg
     1681 gcagctcagc attctcaatc tggaaccacc accacctcct cttgggacat gggctccacc
     1741 acacaatccc catcgctggt gcagtatgat ttgaagaacc caaatgattc aacagtgcac
     1801 agccccttta caaagcgcca ggctttcacc tcatcttcaa ccatgatgga ggtgttcctt
     1861 caggagaagc cacctgcagt ggctacctcc actgctgcac ctccaccccc atcttctcct
     1921 ctgccaagca aatccacctc ggctccacaa atgtctcctg ggtcttcaga caaccaatcg
     1981 tccagccctc agccggctca gcaaaaactg aaacagcaga agaaaaaagc ctccttgact
     2041 tctaagattc ctgctctggc tgtggagatg cctggctcgg cagatatctc agggctaaat
     2101 ctgcagtttg gggcgttgca gtttgggtca gagcctgtcc tttctgatta tgagtccacc
     2161 cccaccacga gcgcctcttc aagccaggct ccaagtagcc tctataccag cacggccagt
     2221 gaatcttcat ccacaatttc atctaaccag agtcaggagt ctggttatca gagtggccca
     2281 attcagtcga caacctatac ctcccaaaat aatgctcagg gccctctata tgaacagaga
     2341 tccacacaga ctcggcggta ccccagctcc atctcttcat caccccaaaa ggacttgact
     2401 caggcaaaga atggcttcag ttctgtgcag gccacgcagt tacagaccac gcaatctgtt
     2461 gaaggtgcta caggctctgc agtgaaatct gactcacctt ccacttctag catcccccct
     2521 ctcagtgaaa cggtatctgc agcttcctta ctgacgacaa ccaatcagca ctcatcttcc
     2581 ttgggtggct tgagccacaa tgaggagatt ccaaatagta ccaccacaca acacagcagc
     2641 acgttatcta ctcagcagaa taccctttcg tcatcaacat cttctgggcg cacttcgaca
     2701 tccactcttt tgcacacaag cgtggagagt gaggcgaatc ttcattcttc ctccagcact
     2761 ttctccacca catccagcac agtctctgca cctcccccag tggtcagtgt ctcttccagt
     2821 ctcaatagtg gcagtagctt gggcctcagc ctaggcagca actctaccgt cacagcctcc
     2881 actcgaagct cagttgctac aacttcagga aaagctcctc ccaacctccc tcctggggtc
     2941 ccgccgttgt tgcctaatcc atatattatg gctccagggc tgttacatgc ctacccgcca
     3001 caagtatatg gttatgatga cttgcagatg cttcagacaa gatttccatt ggattactac
     3061 agcatcccat ttcccacacc caccactccg ctgactggga gggatggtag cctggccagc
     3121 aacccttatt ctggtgacct cacaaagttc ggccgtgggg atgcctcctc cccggccccg
     3181 gccacaacct tggcccagcc ccagcagaac cagacacaga ctcaccatac cacgcagcag
     3241 acattcctga acccggcgct gcctcctggc tacagttaca ccagcctgcc atactacaca
     3301 ggggttccgg gcctccccag caccttccag tatgggcctg ctgtgttccc tgtggctcct
     3361 acctcttcca agcagcatgg tgtgaatgtc agtgtgaatg catcagccac ccctttccaa
     3421 cagccaagtg gatatgggtc tcatggatac aacactggtg tatcagtcac ctccagtaac
     3481 acaggcgtgc cagatatctc gggttctgtg tactccaaaa cccagcagtc ctttgagaaa
     3541 caaggttttc attccggtac tcctgctgcc tccttcaact tgccttcagc cctaggaagt
     3601 ggggggccca tcaatccggc cacagctgct gcctacccac ctgccccctt tatgcacatt
     3661 ctgacccccc atcagcaacc gcactcccag atacttcacc atcacctgca gcaggatggc
     3721 cagacgggca gcgggcaacg tagccagacc agctccatcc cgcagaagcc ccagaccaac
     3781 aagtctgcct acaacagcta cagctggggg gccaactgag gccctgactc tcttctcccg
     3841 gtcccatctt ctgagagggc ttctcagcct ggcaactatg gaaacagcat caaagagaga
     3901 aaggaatgtg ggggggttcc actgccccca cccccagcgg cccatcccat gcctcagctt
     3961 catgtctgtc ccattcccat accatcccca ctctgttgta tgtattatag gatttgtatt
     4021 ttctcctttt ttttttcttc ctttcctctc ctcctccccc cttgcattca agattatgaa
     4081 actttgctgt gggccctgcc ctcccttttc ctcctcctgt tcaccctggt ggtgtgtggg
     4141 tgaggtaggg aggggggacc cccaaatata tatcagccca acagccctaa gtctcctcct
     4201 ttattattag gaaacaaaac aacaacaaca aaaaaatggc gtcatgaata tgaacagcat
     4261 tgtcagatga attagttgaa gtgttttttt tttttttgta ctgtgtcctc aaatttaatg
     4321 gattaatgtg tcttgtatat ataaaaagaa aacctctacc ttca
//
LOCUS       XM_032651686            4458 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X49, mRNA.
ACCESSION   XM_032651686
VERSION     XM_032651686.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4458
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4458
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763489"
     CDS             1235..3913
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X33"
                     /protein_id="XP_032507577.1"
                     /db_xref="GeneID:116763489"
                     /translation="MGTFNPADYAEPANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRT
                     ATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMEN
                     DSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGS
                     STTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDST
                     VHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSS
                     DNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVL
                     SDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNA
                     QGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKS
                     DSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNT
                     LSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSS
                     LGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYG
                     YDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPAT
                     TLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAP
                     TSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSF
                     EKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHL
                     QQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
     misc_feature    2135..2218
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 agtgtggagg agactgaggt aaagttggga gcgcagcggc gttggcggcg gcggcggcgg
       61 cggcggcagc gcggcggggc cgggaaatgt aaaactcaat tcttaatgac tgcatcaaac
      121 agcaaagacc tatgtaacat attgacccaa ctggctgaag aatttatcca cagggaagtt
      181 ggctttcttt gtgacccaag aaacagtatt ctaccttgta aatactgtta tttgtatata
      241 ctgtaaatga tgacgtcggt gggcactaac cgagcccggg gaaactggga accacctcaa
      301 aaccaaaatc agacacagca caagcagcgg ccccaggcca ctgcggaaca aattcgactt
      361 gcacagatga tttcggacca taatgatgct gactttgagg aaaaggtgaa acaattgatt
      421 gatatcacag gcaagaacca ggatgaatgt gtcattgctt tgcatgactg caacggagat
      481 gtcaacagag ccatcaatgt actgctggaa ggaaacccag atacgcattc ctgggagatg
      541 gttgggaaga agaaaggagt ctcaggacag aaggacagtg gccaaacgga atccaacgag
      601 gaaggcaaag aaaatcgaga ccgggacaga gactatagtc ggcgacgtgg tgggccacca
      661 agacggggga gaggtgccag ccgcggacga gagtgtatgc atggggcttt aacaaaacta
      721 gttgtgggtt agtaatgtct agacttgagg gatgtcaggg ctctgcgagg ctggatctag
      781 taaccattat atcatccttt tgatttttct taaaatcatc tgttctgaga ccttggcatt
      841 tcttgcatgt agccttttct agcaacagcc accagttgag catgaagtta ccttgtagcc
      901 gtttgtaaaa ttgtttgact agtaaccatt ccctagtaac catcatgttc catccttcca
      961 gctcattttc tcttctttgt ttttgtctcc ccaccaccat gtatacatac catttatgta
     1021 catactttct attcactttg ctctggccat ctgtggtgtt ttgttttgtt ttgttttgtt
     1081 ttgtttttaa atttcagttc gaggtcagga aaatggatta gatggcacca agagtggagg
     1141 gccttctgga agaggcacag aaagaggcag aagaggtcgt ggccgaggca gaggtggctc
     1201 tggtaggcgg ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta
     1261 tgcagagccg gccaatactg atgataacta tggcaataat agcggcaata catggaacaa
     1321 cactggccac tttgaaccag atgatgggac gagtgcatgg aggactgcaa cagaggagtg
     1381 gggaactgaa gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt
     1441 gtcgtcagtg cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct
     1501 tgctgttctg ttggggaaga caccatcttc aatggagaat gattcatcta atctggatcc
     1561 atctcaggct ccttctcttg cccagcctct ggtgttcagt aactcgaagc agagtgccat
     1621 atcacagcct gcttcaggga acacgttttc tcatcacagt atggtgagca tgttagggaa
     1681 aggatttggt gatgtcggtg aagctaaagg cagcagcacc acaggctccc agttcttgga
     1741 gcaattcaag actgctcagg ccctggctca gttggcagct cagcattctc aatctggaac
     1801 caccaccacc tcctcttggg acatgggctc caccacacaa tccccatcgc tggtgcagta
     1861 tgatttgaag aacccaaatg attcaacagt gcacagcccc tttacaaagc gccaggcttt
     1921 cacctcatct tcaaccatga tggaggtgtt ccttcaggag aagccacctg cagtggctac
     1981 ctccactgct gcacctccac ccccatcttc tcctctgcca agcaaatcca cctcggctcc
     2041 acaaatgtct cctgggtctt cagacaacca atcgtccagc cctcagccgg ctcagcaaaa
     2101 actgaaacag cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga
     2161 gatgcctggc tcggcagata tctcagggct aaatctgcag tttggggcgt tgcagtttgg
     2221 gtcagagcct gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca
     2281 ggctccaagt agcctctata ccagcacggc cagtgaatct tcatccacaa tttcatctaa
     2341 ccagagtcag gagtctggtt atcagagtgg cccaattcag tcgacaacct atacctccca
     2401 aaataatgct cagggccctc tatatgaaca gagatccaca cagactcggc ggtaccccag
     2461 ctccatctct tcatcacccc aaaaggactt gactcaggca aagaatggct tcagttctgt
     2521 gcaggccacg cagttacaga ccacgcaatc tgttgaaggt gctacaggct ctgcagtgaa
     2581 atctgactca ccttccactt ctagcatccc ccctctcagt gaaacggtat ctgcagcttc
     2641 cttactgacg acaaccaatc agcactcatc ttccttgggt ggcttgagcc acaatgagga
     2701 gattccaaat agtaccacca cacaacacag cagcacgtta tctactcagc agaataccct
     2761 ttcgtcatca acatcttctg ggcgcacttc gacatccact cttttgcaca caagcgtgga
     2821 gagtgaggcg aatcttcatt cttcctccag cactttctcc accacatcca gcacagtctc
     2881 tgcacctccc ccagtggtca gtgtctcttc cagtctcaat agtggcagta gcttgggcct
     2941 cagcctaggc agcaactcta ccgtcacagc ctccactcga agctcagttg ctacaacttc
     3001 aggaaaagct cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccatatat
     3061 tatggctcca gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca
     3121 gatgcttcag acaagatttc cattggatta ctacagcatc ccatttccca cacccaccac
     3181 tccgctgact gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa
     3241 gttcggccgt ggggatgcct cctccccggc cccggccaca accttggccc agccccagca
     3301 gaaccagaca cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc
     3361 tggctacagt tacaccagcc tgccatacta cacaggggtt ccgggcctcc ccagcacctt
     3421 ccagtatggg cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa
     3481 tgtcagtgtg aatgcatcag ccaccccttt ccaacagcca agtggatatg ggtctcatgg
     3541 atacaacact ggtgtatcag tcacctccag taacacaggc gtgccagata tctcgggttc
     3601 tgtgtactcc aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc
     3661 tgcctccttc aacttgcctt cagccctagg aagtgggggg cccatcaatc cggccacagc
     3721 tgctgcctac ccacctgccc cctttatgca cattctgacc ccccatcagc aaccgcactc
     3781 ccagatactt caccatcacc tgcagcagga tggccagacg ggcagcgggc aacgtagcca
     3841 gaccagctcc atcccgcaga agccccagac caacaagtct gcctacaaca gctacagctg
     3901 gggggccaac tgaggccctg actctcttct cccggtccca tcttctgaga gggcttctca
     3961 gcctggcaac tatggaaaca gcatcaaaga gagaaaggaa tgtggggggg ttccactgcc
     4021 cccaccccca gcggcccatc ccatgcctca gcttcatgtc tgtcccattc ccataccatc
     4081 cccactctgt tgtatgtatt ataggatttg tattttctcc tttttttttt cttcctttcc
     4141 tctcctcctc cccccttgca ttcaagatta tgaaactttg ctgtgggccc tgccctccct
     4201 tttcctcctc ctgttcaccc tggtggtgtg tgggtgaggt agggaggggg gacccccaaa
     4261 tatatatcag cccaacagcc ctaagtctcc tcctttatta ttaggaaaca aaacaacaac
     4321 aacaaaaaaa tggcgtcatg aatatgaaca gcattgtcag atgaattagt tgaagtgttt
     4381 tttttttttt tgtactgtgt cctcaaattt aatggattaa tgtgtcttgt atatataaaa
     4441 agaaaacctc taccttca
//
LOCUS       XM_032651693            4213 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin associated protein 2 like
            (UBAP2L), transcript variant X50, mRNA.
ACCESSION   XM_032651693
VERSION     XM_032651693.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4213
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4213
                     /gene="UBAP2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116763489"
     CDS             1083..3752
                     /gene="UBAP2L"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like isoform X34"
                     /protein_id="XP_032507584.1"
                     /db_xref="GeneID:116763489"
                     /translation="MGTFNPADYAEPANTDDNYGNNSGNTWNNTGHFEPDDGTSAWRT
                     ATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMEN
                     DSSNLDPSQAPSLAQPLVFSNSKQSAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGS
                     STTGSQFLEQFKTAQALAQLAAQHSQSGTTTTSSWDMGSTTQSPSLVQYDLKNPNDST
                     VHSPFTKRQAFTSSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSS
                     DNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVL
                     SDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQSQESGYQSGPIQSTTYTSQNNA
                     QGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKS
                     DSPSTSSIPPLSETVSAASLLTTTNQHSSSLGGLSHNEEIPNSTTTQHSSTLSTQQNT
                     LSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSS
                     LGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYG
                     YDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPAT
                     TLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAP
                     TSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFE
                     KQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQ
                     QDGQLPYLQMILCCQRQQEEQDILSLVDDQLDE"
     misc_feature    1983..2066
                     /gene="UBAP2L"
                     /note="Ubiquitin-associated protein 2; Region: DUF3697;
                     pfam12478"
                     /db_xref="CDD:372135"
ORIGIN      
        1 gacgggggag agcgagaaag agcgcgagcg agctaggcct gggccccgcc tgagtattct
       61 accttgtaaa tactgttatt tgtatatact gtaaatgatg acgtcggtgg gcactaaccg
      121 agcccgggga aactgggaac cacctcaaaa ccaaaatcag acacagcaca agcagcggcc
      181 ccaggccact gcggaacaaa ttcgacttgc acagatgatt tcggaccata atgatgctga
      241 ctttgaggaa aaggtgaaac aattgattga tatcacaggc aagaaccagg atgaatgtgt
      301 cattgctttg catgactgca acggagatgt caacagagcc atcaatgtac tgctggaagg
      361 aaacccagat acgcattcct gggagatggt tgggaagaag aaaggagtct caggacagaa
      421 ggacagtggc caaacggaat ccaacgagga aggcaaagaa aatcgagacc gggacagaga
      481 ctatagtcgg cgacgtggtg ggccaccaag acgggggaga ggtgccagcc gcggacgaga
      541 gtgtatgcat ggggctttaa caaaactagt tgtgggttag taatgtctag acttgaggga
      601 tgtcagggct ctgcgaggct ggatctagta accattatat catccttttg atttttctta
      661 aaatcatctg ttctgagacc ttggcatttc ttgcatgtag ccttttctag caacagccac
      721 cagttgagca tgaagttacc ttgtagccgt ttgtaaaatt gtttgactag taaccattcc
      781 ctagtaacca tcatgttcca tccttccagc tcattttctc ttctttgttt ttgtctcccc
      841 accaccatgt atacatacca tttatgtaca tactttctat tcactttgct ctggccatct
      901 gtggtgtttt gttttgtttt gttttgtttt gtttttaaat ttcagttcga ggtcaggaaa
      961 atggattaga tggcaccaag agtggagggc cttctggaag aggcacagaa agaggcagaa
     1021 gaggtcgtgg ccgaggcaga ggtggctctg gtaggcgggg aggaaggttt tctgctcaag
     1081 gaatgggaac ctttaaccca gctgattatg cagagccggc caatactgat gataactatg
     1141 gcaataatag cggcaataca tggaacaaca ctggccactt tgaaccagat gatgggacga
     1201 gtgcatggag gactgcaaca gaggagtggg gaactgaaga ttggaatgaa gatctttctg
     1261 agaccaagat cttcactgcc tctaatgtgt cgtcagtgcc tctgcctgcg gagaatgtga
     1321 caatcactgc tggtcagaga attgaccttg ctgttctgtt ggggaagaca ccatcttcaa
     1381 tggagaatga ttcatctaat ctggatccat ctcaggctcc ttctcttgcc cagcctctgg
     1441 tgttcagtaa ctcgaagcag agtgccatat cacagcctgc ttcagggaac acgttttctc
     1501 atcacagtat ggtgagcatg ttagggaaag gatttggtga tgtcggtgaa gctaaaggca
     1561 gcagcaccac aggctcccag ttcttggagc aattcaagac tgctcaggcc ctggctcagt
     1621 tggcagctca gcattctcaa tctggaacca ccaccacctc ctcttgggac atgggctcca
     1681 ccacacaatc cccatcgctg gtgcagtatg atttgaagaa cccaaatgat tcaacagtgc
     1741 acagcccctt tacaaagcgc caggctttca cctcatcttc aaccatgatg gaggtgttcc
     1801 ttcaggagaa gccacctgca gtggctacct ccactgctgc acctccaccc ccatcttctc
     1861 ctctgccaag caaatccacc tcggctccac aaatgtctcc tgggtcttca gacaaccaat
     1921 cgtccagccc tcagccggct cagcaaaaac tgaaacagca gaagaaaaaa gcctccttga
     1981 cttctaagat tcctgctctg gctgtggaga tgcctggctc ggcagatatc tcagggctaa
     2041 atctgcagtt tggggcgttg cagtttgggt cagagcctgt cctttctgat tatgagtcca
     2101 cccccaccac gagcgcctct tcaagccagg ctccaagtag cctctatacc agcacggcca
     2161 gtgaatcttc atccacaatt tcatctaacc agagtcagga gtctggttat cagagtggcc
     2221 caattcagtc gacaacctat acctcccaaa ataatgctca gggccctcta tatgaacaga
     2281 gatccacaca gactcggcgg taccccagct ccatctcttc atcaccccaa aaggacttga
     2341 ctcaggcaaa gaatggcttc agttctgtgc aggccacgca gttacagacc acgcaatctg
     2401 ttgaaggtgc tacaggctct gcagtgaaat ctgactcacc ttccacttct agcatccccc
     2461 ctctcagtga aacggtatct gcagcttcct tactgacgac aaccaatcag cactcatctt
     2521 ccttgggtgg cttgagccac aatgaggaga ttccaaatag taccaccaca caacacagca
     2581 gcacgttatc tactcagcag aatacccttt cgtcatcaac atcttctggg cgcacttcga
     2641 catccactct tttgcacaca agcgtggaga gtgaggcgaa tcttcattct tcctccagca
     2701 ctttctccac cacatccagc acagtctctg cacctccccc agtggtcagt gtctcttcca
     2761 gtctcaatag tggcagtagc ttgggcctca gcctaggcag caactctacc gtcacagcct
     2821 ccactcgaag ctcagttgct acaacttcag gaaaagctcc tcccaacctc cctcctgggg
     2881 tcccgccgtt gttgcctaat ccatatatta tggctccagg gctgttacat gcctacccgc
     2941 cacaagtata tggttatgat gacttgcaga tgcttcagac aagatttcca ttggattact
     3001 acagcatccc atttcccaca cccaccactc cgctgactgg gagggatggt agcctggcca
     3061 gcaaccctta ttctggtgac ctcacaaagt tcggccgtgg ggatgcctcc tccccggccc
     3121 cggccacaac cttggcccag ccccagcaga accagacaca gactcaccat accacgcagc
     3181 agacattcct gaacccggcg ctgcctcctg gctacagtta caccagcctg ccatactaca
     3241 caggggttcc gggcctcccc agcaccttcc agtatgggcc tgctgtgttc cctgtggctc
     3301 ctacctcttc caagcagcat ggtgtgaatg tcagtgtgaa tgcatcagcc acccctttcc
     3361 aacagccaag tggatatggg tctcatggat acaacactgg tgtatcagtc acctccagta
     3421 acacaggcgt gccagatatc tcgggttctg tgtactccaa aacccagtcc tttgagaaac
     3481 aaggttttca ttccggtact cctgctgcct ccttcaactt gccttcagcc ctaggaagtg
     3541 gggggcccat caatccggcc acagctgctg cctacccacc tgcccccttt atgcacattc
     3601 tgacccccca tcagcaaccg cactcccaga tacttcacca tcacctgcag caggatggcc
     3661 agctaccata tttgcagatg attctctgtt gccagcgcca gcaggaggag caggatatcc
     3721 tcagtctcgt cgatgaccag cttgatgaat aagtattact gtaccaactg ggccttctct
     3781 agcaggcccc gaaggcagtg gaataaaatg aaatcttcgc cctttaagaa ctcctctgac
     3841 cttaatgtgc tagtatcttg cccttgaggg cattcccttc cccctctccc ctaagaatta
     3901 cacagcgtgg tgcctggaaa gaatcactgc aaatcttcat ttcctccaga tctacagcag
     3961 attttaggca atgaagggat agcagatatt gggtggaaag ggaaagggtt aagcaggagt
     4021 tgaaagaaat ggctttgtag aatcaaagtg taatttagat ggatccaggc aaatgaactg
     4081 gaaagaaatg agggcaacat gcactgttgg ctagcaaaac tgaagcagta gttcttactt
     4141 cttgagtgct ttcacttcaa gtagctaata tccaacccct tgaaaaggag tctagagcaa
     4201 ggccagggtt ggg
//
LOCUS       XM_032651706            1353 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus HCLS1 associated protein X-1 (HAX1),
            transcript variant X1, mRNA.
ACCESSION   XM_032651706
VERSION     XM_032651706.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1353
                     /gene="HAX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763664"
     CDS             311..1177
                     /gene="HAX1"
                     /codon_start=1
                     /product="HCLS1-associated protein X-1 isoform X1"
                     /protein_id="XP_032507597.1"
                     /db_xref="GeneID:116763664"
                     /translation="MSLFDLFRGFFGFSGPRRNLGGRSASTPSHRDPFFGGMTRDEDE
                     DDEEEEGATWGRGSSRFESPQPPEEFGFGFSFSPGGGMRFHDNFGFDDLVRDFNNIFS
                     EMGAWTLPSRPPELPGPESETPGERRQEGQTLRDSMLKYPDSHQPRIFRGALESDART
                     ESSKPAPGWGSQRPFHRFDDTWPVTPHSRAREDNDLDTQVSEEGLGPVLQPQPKSYFK
                     SISVTKITKPDGTVEERRTVVDSEGRKETTVTHQEAGGSPRDGPESPTPPSLDDAFSI
                     LDLFVGRWFRSR"
ORIGIN      
        1 ctcgaaacac cctgttggag cgggttgatc ggcaggaagg agaattgact taggaggcag
       61 gtgatcgttg taaaatgaaa attcagtacg cccgctccct tcacaggaaa cagtaaaaga
      121 aaacctttgg aacgtgatag gtccgtccgc cctgcccccc cacccagtcc ggcttacggt
      181 cgttttacga cagtgtccga tcgcaggctt gctttccggt agcgtggtct gacgcttcgc
      241 tcaatttccg tcagcgtagc tctggctaac cccagctgtg gggttcgaaa gttcgagtcc
      301 cactgcggga atgagcctct ttgacctctt tcggggcttt ttcggctttt ctggacctcg
      361 gagaaatctt ggtggccgat ctgcctccac ccctagccac agagatccct tttttggagg
      421 gatgactcgc gatgaagatg aagatgatga ggaagaagaa ggagccacgt ggggccgtgg
      481 gagctcgaga tttgagagtc cccagccccc cgaggaattt ggcttcggct tcagcttcag
      541 cccaggagga gggatgcgtt tccacgataa cttcggcttt gatgacctag tacgggattt
      601 caataacatc ttcagcgaga tgggggcctg gaccttgcct tcccgccctc ctgaacttcc
      661 aggtcctgag tcagagacac ctggtgagag acggcaggaa ggacagacgc ttcgggactc
      721 aatgcttaag tatccagata gtcaccagcc taggatcttt cgtggggcct tggagagtga
      781 cgcaagaact gaatcctcca aaccagcacc aggctggggc tcccagagac cttttcatag
      841 gtttgatgat acgtggcctg tgacccccca ttctagagcc agagaggaca atgatcttga
      901 tacccaggtt tccgaggagg gccttggccc agttctgcag ccccagccca aatcctattt
      961 caagagcatc tctgtgacta agatcactaa gccagatggg accgtagagg agcgccggac
     1021 tgtggtggac agtgagggcc ggaaagagac cacagtaacc catcaagaag caggtggctc
     1081 tcctagggat ggtccagaat caccaacacc tccatccctg gatgatgcct tttccatcct
     1141 ggatttgttc gtaggacgtt ggttccggtc ccggtagcct tgttaaccct cagaggcctt
     1201 taggttcttt tcgcctccca ccctttgctc accagcaatg ggcttagttc tcctcctgcc
     1261 acgtcagcac cttgggtgtg tggaacagtg aattgggggt atgtcagtat gtcactcacc
     1321 cagactgacc aataaaacct ttatttatgc taa
//
LOCUS       XM_032651713            1320 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus HCLS1 associated protein X-1 (HAX1),
            transcript variant X2, mRNA.
ACCESSION   XM_032651713
VERSION     XM_032651713.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1320
                     /gene="HAX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763664"
     CDS             311..1144
                     /gene="HAX1"
                     /codon_start=1
                     /product="HCLS1-associated protein X-1 isoform X2"
                     /protein_id="XP_032507604.1"
                     /db_xref="GeneID:116763664"
                     /translation="MSLFDLFRGFFGFSGPRSHRDPFFGGMTRDEDEDDEEEEGATWG
                     RGSSRFESPQPPEEFGFGFSFSPGGGMRFHDNFGFDDLVRDFNNIFSEMGAWTLPSRP
                     PELPGPESETPGERRQEGQTLRDSMLKYPDSHQPRIFRGALESDARTESSKPAPGWGS
                     QRPFHRFDDTWPVTPHSRAREDNDLDTQVSEEGLGPVLQPQPKSYFKSISVTKITKPD
                     GTVEERRTVVDSEGRKETTVTHQEAGGSPRDGPESPTPPSLDDAFSILDLFVGRWFRS
                     R"
ORIGIN      
        1 ctcgaaacac cctgttggag cgggttgatc ggcaggaagg agaattgact taggaggcag
       61 gtgatcgttg taaaatgaaa attcagtacg cccgctccct tcacaggaaa cagtaaaaga
      121 aaacctttgg aacgtgatag gtccgtccgc cctgcccccc cacccagtcc ggcttacggt
      181 cgttttacga cagtgtccga tcgcaggctt gctttccggt agcgtggtct gacgcttcgc
      241 tcaatttccg tcagcgtagc tctggctaac cccagctgtg gggttcgaaa gttcgagtcc
      301 cactgcggga atgagcctct ttgacctctt tcggggcttt ttcggctttt ctggacctcg
      361 gagccacaga gatccctttt ttggagggat gactcgcgat gaagatgaag atgatgagga
      421 agaagaagga gccacgtggg gccgtgggag ctcgagattt gagagtcccc agccccccga
      481 ggaatttggc ttcggcttca gcttcagccc aggaggaggg atgcgtttcc acgataactt
      541 cggctttgat gacctagtac gggatttcaa taacatcttc agcgagatgg gggcctggac
      601 cttgccttcc cgccctcctg aacttccagg tcctgagtca gagacacctg gtgagagacg
      661 gcaggaagga cagacgcttc gggactcaat gcttaagtat ccagatagtc accagcctag
      721 gatctttcgt ggggccttgg agagtgacgc aagaactgaa tcctccaaac cagcaccagg
      781 ctggggctcc cagagacctt ttcataggtt tgatgatacg tggcctgtga ccccccattc
      841 tagagccaga gaggacaatg atcttgatac ccaggtttcc gaggagggcc ttggcccagt
      901 tctgcagccc cagcccaaat cctatttcaa gagcatctct gtgactaaga tcactaagcc
      961 agatgggacc gtagaggagc gccggactgt ggtggacagt gagggccgga aagagaccac
     1021 agtaacccat caagaagcag gtggctctcc tagggatggt ccagaatcac caacacctcc
     1081 atccctggat gatgcctttt ccatcctgga tttgttcgta ggacgttggt tccggtcccg
     1141 gtagccttgt taaccctcag aggcctttag gttcttttcg cctcccaccc tttgctcacc
     1201 agcaatgggc ttagttctcc tcctgccacg tcagcacctt gggtgtgtgg aacagtgaat
     1261 tgggggtatg tcagtatgtc actcacccag actgaccaat aaaaccttta tttatgctaa
//
LOCUS       XM_032651721            1127 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus HCLS1 associated protein X-1 (HAX1),
            transcript variant X3, mRNA.
ACCESSION   XM_032651721
VERSION     XM_032651721.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1127
                     /gene="HAX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763664"
     CDS             196..951
                     /gene="HAX1"
                     /codon_start=1
                     /product="HCLS1-associated protein X-1 isoform X3"
                     /protein_id="XP_032507612.1"
                     /db_xref="GeneID:116763664"
                     /translation="MTRDEDEDDEEEEGATWGRGSSRFESPQPPEEFGFGFSFSPGGG
                     MRFHDNFGFDDLVRDFNNIFSEMGAWTLPSRPPELPGPESETPGERRQEGQTLRDSML
                     KYPDSHQPRIFRGALESDARTESSKPAPGWGSQRPFHRFDDTWPVTPHSRAREDNDLD
                     TQVSEEGLGPVLQPQPKSYFKSISVTKITKPDGTVEERRTVVDSEGRKETTVTHQEAG
                     GSPRDGPESPTPPSLDDAFSILDLFVGRWFRSR"
ORIGIN      
        1 ctcaatttcc gtcagcgtag ctctggctaa ccccagctgt ggggttcgaa agttcgagtc
       61 ccactgcggg aatgagcctc tttgacctct ttcggggctt tttcggcttt tctggacctc
      121 ggaggtgaga gcgggtccgg gccagagaac gtggggcggg atcctctgag ccacagagat
      181 cccttttttg gagggatgac tcgcgatgaa gatgaagatg atgaggaaga agaaggagcc
      241 acgtggggcc gtgggagctc gagatttgag agtccccagc cccccgagga atttggcttc
      301 ggcttcagct tcagcccagg aggagggatg cgtttccacg ataacttcgg ctttgatgac
      361 ctagtacggg atttcaataa catcttcagc gagatggggg cctggacctt gccttcccgc
      421 cctcctgaac ttccaggtcc tgagtcagag acacctggtg agagacggca ggaaggacag
      481 acgcttcggg actcaatgct taagtatcca gatagtcacc agcctaggat ctttcgtggg
      541 gccttggaga gtgacgcaag aactgaatcc tccaaaccag caccaggctg gggctcccag
      601 agaccttttc ataggtttga tgatacgtgg cctgtgaccc cccattctag agccagagag
      661 gacaatgatc ttgataccca ggtttccgag gagggccttg gcccagttct gcagccccag
      721 cccaaatcct atttcaagag catctctgtg actaagatca ctaagccaga tgggaccgta
      781 gaggagcgcc ggactgtggt ggacagtgag ggccggaaag agaccacagt aacccatcaa
      841 gaagcaggtg gctctcctag ggatggtcca gaatcaccaa cacctccatc cctggatgat
      901 gccttttcca tcctggattt gttcgtagga cgttggttcc ggtcccggta gccttgttaa
      961 ccctcagagg cctttaggtt cttttcgcct cccacccttt gctcaccagc aatgggctta
     1021 gttctcctcc tgccacgtca gcaccttggg tgtgtggaac agtgaattgg gggtatgtca
     1081 gtatgtcact cacccagact gaccaataaa acctttattt atgctaa
//
LOCUS       XM_032651730            1059 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus HCLS1 associated protein X-1 (HAX1),
            transcript variant X4, mRNA.
ACCESSION   XM_032651730
VERSION     XM_032651730.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1059
                     /gene="HAX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 97% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116763664"
     CDS             128..883
                     /gene="HAX1"
                     /codon_start=1
                     /product="HCLS1-associated protein X-1 isoform X3"
                     /protein_id="XP_032507621.1"
                     /db_xref="GeneID:116763664"
                     /translation="MTRDEDEDDEEEEGATWGRGSSRFESPQPPEEFGFGFSFSPGGG
                     MRFHDNFGFDDLVRDFNNIFSEMGAWTLPSRPPELPGPESETPGERRQEGQTLRDSML
                     KYPDSHQPRIFRGALESDARTESSKPAPGWGSQRPFHRFDDTWPVTPHSRAREDNDLD
                     TQVSEEGLGPVLQPQPKSYFKSISVTKITKPDGTVEERRTVVDSEGRKETTVTHQEAG
                     GSPRDGPESPTPPSLDDAFSILDLFVGRWFRSR"
ORIGIN      
        1 gctcaatttc cgtcagcgta gctctggcta accccagctg tggggttcga aagttcgagt
       61 cccactgcgg gaatgagcct ctttgacctc tttcggggct ttttcggctt ttctggacct
      121 cggagggatg actcgcgatg aagatgaaga tgatgaggaa gaagaaggag ccacgtgggg
      181 ccgtgggagc tcgagatttg agagtcccca gccccccgag gaatttggct tcggcttcag
      241 cttcagccca ggaggaggga tgcgtttcca cgataacttc ggctttgatg acctagtacg
      301 ggatttcaat aacatcttca gcgagatggg ggcctggacc ttgccttccc gccctcctga
      361 acttccaggt cctgagtcag agacacctgg tgagagacgg caggaaggac agacgcttcg
      421 ggactcaatg cttaagtatc cagatagtca ccagcctagg atctttcgtg gggccttgga
      481 gagtgacgca agaactgaat cctccaaacc agcaccaggc tggggctccc agagaccttt
      541 tcataggttt gatgatacgt ggcctgtgac cccccattct agagccagag aggacaatga
      601 tcttgatacc caggtttccg aggagggcct tggcccagtt ctgcagcccc agcccaaatc
      661 ctatttcaag agcatctctg tgactaagat cactaagcca gatgggaccg tagaggagcg
      721 ccggactgtg gtggacagtg agggccggaa agagaccaca gtaacccatc aagaagcagg
      781 tggctctcct agggatggtc cagaatcacc aacacctcca tccctggatg atgccttttc
      841 catcctggat ttgttcgtag gacgttggtt ccggtcccgg tagccttgtt aaccctcaga
      901 ggcctttagg ttcttttcgc ctcccaccct ttgctcacca gcaatgggct tagttctcct
      961 cctgccacgt cagcaccttg ggtgtgtgga acagtgaatt gggggtatgt cagtatgtca
     1021 ctcacccaga ctgaccaata aaacctttat ttatgctaa
//
LOCUS       XM_032651741            1824 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf43 homolog (C1H1orf43),
            transcript variant X1, mRNA.
ACCESSION   XM_032651741
VERSION     XM_032651741.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1824
                     /gene="C1H1orf43"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 mRNAs, 5 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763685"
     CDS             297..1058
                     /gene="C1H1orf43"
                     /codon_start=1
                     /product="uncharacterized protein C1orf43 homolog isoform
                     X1"
                     /protein_id="XP_032507632.1"
                     /db_xref="GeneID:116763685"
                     /translation="MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRR
                     GPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQNCYNYLY
                     RMKALDAIRASEIPFHAEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDG
                     YETARYGTGVFGQSEYLRYQEALSELATVVKARSGSSQRQHQSAAKDLTQSPEVSPTT
                     IQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL"
     misc_feature    312..860
                     /gene="C1H1orf43"
                     /note="NICE-3 protein; Region: NICE-3; pfam07406"
                     /db_xref="CDD:462157"
ORIGIN      
        1 gcggatagcc tccgtttcct cttactggcg tagttccgcg tctccgcact cgtcggtccc
       61 ggttgtcatt gcgtgcctga gtcacgtgct ggggggaagc gggaaggcgt cgttcttctt
      121 tcctaaccac ccccccgtcc gccatgtttt caggcccggt cagccttggt ctttccccgt
      181 aaggaaatgg ccggggcgct tcagggaacc caggcgccgt tgcctcggcg cagcccgggc
      241 tgacgaggca gggcagcggg gtaaaccgga gcggttctgc gcggggtggg gaggccatgg
      301 cgtccggcag taactggctg tccggcgtga atgtcgtgct ggtgatggcc tacgggagcc
      361 tggtgtttgt actgctattt atttttgtga agaggcaaat catgcgcttt gcaatgaaat
      421 cccgaagggg acctcatgtc cctgtgggac acaatgcccc caaggactta aaagaggaga
      481 ttgatatccg actatccagg gttcaggata tcaaatatga acctcagctc cttgcagatg
      541 atgacgcaag actgctacag ctggaaaccc agggaaatca aaattgctac aactatctat
      601 acaggatgaa agctctggat gccatccgtg cctctgagat cccatttcat gctgaaggcc
      661 ggcatccccg ttccttaatg ggcaagaatt tccgctccta tctgctagat cttcgaaaca
      721 ctagtactcc tttcaagggt gtgcgcaagg ccctcattga taccctgctg gatggctatg
      781 agacagcccg ctatgggaca ggggtctttg gccagagtga gtacctgcgc tatcaggagg
      841 ccctgagtga gctggccaca gtggtcaaag cccgaagtgg gagctctcag cgacaacatc
      901 agtcagcagc caaagaccta acccagtctc ctgaagtctc cccaacaacc atccaggtga
      961 catacctccc ctccagtcag aagagtaaac gtgccaagca cttcctcgaa ttgaagagct
     1021 ttaaggacaa ctataacaca ctggagagta ctctgtgatg gagctgaaga actctcactg
     1081 ttgatgaagc cagacagact gcagtgtgct tgccaggcag ccctcaggtc aatctggctc
     1141 agcagcccgg actggatcag ctgaagctct ggttaagttc agagctctta gagttcatgc
     1201 ctagaggtca ttttcccacc ctctcttacg gccagtttca gaacatcagt taagacttta
     1261 ttttcccttg gtagcacttt tctctggagt tgaattcaga tgtttttctt aatatttctg
     1321 ttaaagcttc cttaaaaatc ctcacttggt tttaatcatg gttcatctgt ccttttccag
     1381 actataaata atcccaaggg tgagagttgc gatgatgaga cttggtgtct tgtcttctgt
     1441 atctgtccct tcgaacacag ttgaatggga accatttggg tttgagacat ctaagagttc
     1501 attggtggga aaggtataca ggaactggtg gggagattgg gtgaggccat gagtggtatg
     1561 tggaacagct taccctggtg ctccacttaa accaggatgt gttgaaacat taacacaact
     1621 tccctggcgt gcgaggatct gccttctact ttcattccct actgtcatga ataaagtgaa
     1681 aagggaatgt tttgacacct gacataatcc catctctcct catgtgtggg gtagtgtgaa
     1741 ggaatggtca gaccaatata ttggtctgac tttatataaa ctatttaata aaatgaacaa
     1801 ttaaagaata aagcatatga ttca
//
LOCUS       XM_032651751            1591 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf43 homolog (C1H1orf43),
            transcript variant X2, mRNA.
ACCESSION   XM_032651751
VERSION     XM_032651751.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1591
                     /gene="C1H1orf43"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763685"
     CDS             166..825
                     /gene="C1H1orf43"
                     /codon_start=1
                     /product="uncharacterized protein C1orf43 homolog isoform
                     X2"
                     /protein_id="XP_032507642.1"
                     /db_xref="GeneID:116763685"
                     /translation="MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQL
                     LADDDARLLQLETQGNQNCYNYLYRMKALDAIRASEIPFHAEGRHPRSLMGKNFRSYL
                     LDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQSEYLRYQEALSELATVVKARS
                     GSSQRQHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLEST
                     L"
     misc_feature    181..627
                     /gene="C1H1orf43"
                     /note="NICE-3 protein; Region: NICE-3; pfam07406"
                     /db_xref="CDD:462157"
ORIGIN      
        1 cccccgtccg ccatgttttc aggcccggtc agccttggtc tttccccgta aggaaatggc
       61 cggggcgctt cagggaaccc aggcgccgtt gcctcggcgc agcccgggct gacgaggcag
      121 ggcagcgggg taaaccggag cggttctgcg cggggtgggg aggccatggc gtccggcagt
      181 aactggctgt ccggcgtgaa tgtcgtgctg gtgatggcct acgggagcct ggacttaaaa
      241 gaggagattg atatccgact atccagggtt caggatatca aatatgaacc tcagctcctt
      301 gcagatgatg acgcaagact gctacagctg gaaacccagg gaaatcaaaa ttgctacaac
      361 tatctataca ggatgaaagc tctggatgcc atccgtgcct ctgagatccc atttcatgct
      421 gaaggccggc atccccgttc cttaatgggc aagaatttcc gctcctatct gctagatctt
      481 cgaaacacta gtactccttt caagggtgtg cgcaaggccc tcattgatac cctgctggat
      541 ggctatgaga cagcccgcta tgggacaggg gtctttggcc agagtgagta cctgcgctat
      601 caggaggccc tgagtgagct ggccacagtg gtcaaagccc gaagtgggag ctctcagcga
      661 caacatcagt cagcagccaa agacctaacc cagtctcctg aagtctcccc aacaaccatc
      721 caggtgacat acctcccctc cagtcagaag agtaaacgtg ccaagcactt cctcgaattg
      781 aagagcttta aggacaacta taacacactg gagagtactc tgtgatggag ctgaagaact
      841 ctcactgttg atgaagccag acagactgca gtgtgcttgc caggcagccc tcaggtcaat
      901 ctggctcagc agcccggact ggatcagctg aagctctggt taagttcaga gctcttagag
      961 ttcatgccta gaggtcattt tcccaccctc tcttacggcc agtttcagaa catcagttaa
     1021 gactttattt tcccttggta gcacttttct ctggagttga attcagatgt ttttcttaat
     1081 atttctgtta aagcttcctt aaaaatcctc acttggtttt aatcatggtt catctgtcct
     1141 tttccagact ataaataatc ccaagggtga gagttgcgat gatgagactt ggtgtcttgt
     1201 cttctgtatc tgtcccttcg aacacagttg aatgggaacc atttgggttt gagacatcta
     1261 agagttcatt ggtgggaaag gtatacagga actggtgggg agattgggtg aggccatgag
     1321 tggtatgtgg aacagcttac cctggtgctc cacttaaacc aggatgtgtt gaaacattaa
     1381 cacaacttcc ctggcgtgcg aggatctgcc ttctactttc attccctact gtcatgaata
     1441 aagtgaaaag ggaatgtttt gacacctgac ataatcccat ctctcctcat gtgtggggta
     1501 gtgtgaagga atggtcagac caatatattg gtctgacttt atataaacta tttaataaaa
     1561 tgaacaatta aagaataaag catatgattc a
//
LOCUS       XM_032651759            1799 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf43 homolog (C1H1orf43),
            transcript variant X3, mRNA.
ACCESSION   XM_032651759
VERSION     XM_032651759.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1799
                     /gene="C1H1orf43"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763685"
     CDS             224..793
                     /gene="C1H1orf43"
                     /codon_start=1
                     /product="uncharacterized protein C1orf43 homolog isoform
                     X3"
                     /protein_id="XP_032507650.1"
                     /db_xref="GeneID:116763685"
                     /translation="MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRR
                     GPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQNCYNYLY
                     RMKALDAIRASEIPFHAEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDG
                     YETARYGTGVFGQSEYLRYQEALSELATV"
     misc_feature    239..787
                     /gene="C1H1orf43"
                     /note="NICE-3 protein; Region: NICE-3; pfam07406"
                     /db_xref="CDD:462157"
ORIGIN      
        1 tgcctgagtc acgtgctggg gggaagcggg aaggcgtcgt tcttctttcc taaccacccc
       61 cccgtccgcc atgttttcag gcccggtcag ccttggtctt tccccgtaag gaaatggccg
      121 gggcgcttca gggaacccag gcgccgttgc ctcggcgcag cccgggctga cgaggcaggg
      181 cagcggggta aaccggagcg gttctgcgcg gggtggggag gccatggcgt ccggcagtaa
      241 ctggctgtcc ggcgtgaatg tcgtgctggt gatggcctac gggagcctgg tgtttgtact
      301 gctatttatt tttgtgaaga ggcaaatcat gcgctttgca atgaaatccc gaaggggacc
      361 tcatgtccct gtgggacaca atgcccccaa ggacttaaaa gaggagattg atatccgact
      421 atccagggtt caggatatca aatatgaacc tcagctcctt gcagatgatg acgcaagact
      481 gctacagctg gaaacccagg gaaatcaaaa ttgctacaac tatctataca ggatgaaagc
      541 tctggatgcc atccgtgcct ctgagatccc atttcatgct gaaggccggc atccccgttc
      601 cttaatgggc aagaatttcc gctcctatct gctagatctt cgaaacacta gtactccttt
      661 caagggtgtg cgcaaggccc tcattgatac cctgctggat ggctatgaga cagcccgcta
      721 tgggacaggg gtctttggcc agagtgagta cctgcgctat caggaggccc tgagtgagct
      781 ggccacagtg tgagtttgga ggggaacatg tcaaagggag ctggttagag aatacagggt
      841 caaagcccga agtgggagct ctcagcgaca acatcagtca gcagccaaag acctaaccca
      901 gtctcctgaa gtctccccaa caaccatcca ggtgacatac ctcccctcca gtcagaagag
      961 taaacgtgcc aagcacttcc tcgaattgaa gagctttaag gacaactata acacactgga
     1021 gagtactctg tgatggagct gaagaactct cactgttgat gaagccagac agactgcagt
     1081 gtgcttgcca ggcagccctc aggtcaatct ggctcagcag cccggactgg atcagctgaa
     1141 gctctggtta agttcagagc tcttagagtt catgcctaga ggtcattttc ccaccctctc
     1201 ttacggccag tttcagaaca tcagttaaga ctttattttc ccttggtagc acttttctct
     1261 ggagttgaat tcagatgttt ttcttaatat ttctgttaaa gcttccttaa aaatcctcac
     1321 ttggttttaa tcatggttca tctgtccttt tccagactat aaataatccc aagggtgaga
     1381 gttgcgatga tgagacttgg tgtcttgtct tctgtatctg tcccttcgaa cacagttgaa
     1441 tgggaaccat ttgggtttga gacatctaag agttcattgg tgggaaaggt atacaggaac
     1501 tggtggggag attgggtgag gccatgagtg gtatgtggaa cagcttaccc tggtgctcca
     1561 cttaaaccag gatgtgttga aacattaaca caacttccct ggcgtgcgag gatctgcctt
     1621 ctactttcat tccctactgt catgaataaa gtgaaaaggg aatgttttga cacctgacat
     1681 aatcccatct ctcctcatgt gtggggtagt gtgaaggaat ggtcagacca atatattggt
     1741 ctgactttat ataaactatt taataaaatg aacaattaaa gaataaagca tatgattca
//
LOCUS       XM_032651767            3074 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of G protein signaling 4
            (RGS4), transcript variant X1, mRNA.
ACCESSION   XM_032651767
VERSION     XM_032651767.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3074
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3074
                     /gene="RGS4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 30 long SRA reads, 11 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116763699"
     CDS             380..1051
                     /gene="RGS4"
                     /codon_start=1
                     /product="regulator of G-protein signaling 4 isoform X1"
                     /protein_id="XP_032507658.1"
                     /db_xref="GeneID:116763699"
                     /translation="MKASISMEITFAFEISIHLVESRPCAMTGLSVMMENKISGFYLF
                     RILNVLPPFCILAFRLFFLCNVSRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEY
                     SEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNML
                     EPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLANLSSCGSEKQKGAKSSTDCPSL
                     VPQCA"
     misc_feature    620..961
                     /gene="RGS4"
                     /note="Regulator of G protein signaling (RGS) domain found
                     in the RGS4 protein; Region: RGS_RGS4; cd08714"
                     /db_xref="CDD:188669"
     misc_feature    order(680..685,692..697,809..811,815..817,824..826,
                     833..835,908..910,920..922)
                     /gene="RGS4"
                     /note="G-alpha-i1 interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:188669"
ORIGIN      
        1 gagaagctca gaggattctg acagtatctt taccggagaa aaggcaaagt gtgctcagaa
       61 cagaagccac agctctccct gctgcatttc tttcctaacg tgaatcccac actacacaag
      121 atgtgcaaag gacttgcagg tctgccggct tcttgcttga ggagtgcaaa agatatgaaa
      181 catcggctcg gtttcttgct gcagaagtct gattcctgtg aacataattc ttcccacagc
      241 aagagggaca aagtggtgat ttgtcagagg taagagaaaa ggccttggca aagagccact
      301 gcgtattaac tatctgatga cagaggtgtt ctgtaaggag aagaggaagt catgtcccta
      361 gttaacctag atttggctca tgaaggcctc catttccatg gagatcacgt ttgcatttga
      421 aatctccata catctagtgg aaagccggcc ctgtgcaatg acaggtctca gcgtaatgat
      481 ggaaaataaa atctctgggt tttatttatt caggatctta aatgttttgc ccccattttg
      541 tatcctagca ttcaggttat tctttctctg taatgtctct agggtgagcc aagaggaagt
      601 caaaaagtgg gctgaatcac tggaaaacct gattagtcat gaatgtggac tggccgcttt
      661 caaagctttc ttgaagtctg aatacagtga ggagaacatt gacttctgga tcagctgtga
      721 agagtacaag aaaatcaaat caccctctaa actaagtccc aaggccaaaa agatctataa
      781 tgaattcatc tcagtccagg caaccaaaga ggtaaacctg gactcttgca ccagggagga
      841 gacaagtcgt aacatgctgg agcctacgat aacctgcttt gatgaggctc agaagaagat
      901 tttcaacctg atggaaaagg attcataccg ccgcttcctc aagtcccgat tctatcttga
      961 tttggccaac ctttccagct gtgggtcaga gaagcagaaa ggagccaaaa gttctacaga
     1021 ctgtccttcc ctggtgcccc agtgtgccta attcttgctc agtggtggag gctgaaatgc
     1081 caagactctg tgcctggaaa acctgaggcc aaatattgat ctgtattaag catcagtgct
     1141 ttcttcacat tgtagcctag tgttcatgct gctggctatg tgtgagtcac tcccatacaa
     1201 aaactagatt ttgttttggt gttctggtgt tcatcagggc aggacctcat tccagtccaa
     1261 ttttcccaaa tttcttttag ggtgccatgt gagcaagtat ccaaataatg gccttgtggg
     1321 tctggatttt ctctcctgcc aacagtgtga cctcaggttg gttggttggt ggttgggaca
     1381 cttcatgtga catccacagg cacatgtgtt ctgttaacca gcactttctc caaactcgag
     1441 atgtttagat gaggttgatc tattttatgt acatatgtgt gtgcatgtgt gtgcgtctgt
     1501 gtatatatat atacacatgt acatatgtac atacacacat tctgtatata tgtatgtata
     1561 tatacataca tatatatttt tgcaagaatg gcaggaaaga ccctaggtgc tcataactag
     1621 agtgtgtgta catacataca tgcgtgttct gatccccagt ctttcactct gcaactgaac
     1681 agggcaaact aaaccagctg ccctgcaggc taagaaagga atgctcacct gtggaaagtt
     1741 gattctgtaa aactccatga gttttgctag agaaacatcc cagggatttc atgcttagtt
     1801 taaccaccga cagtctccaa gttggacagt attctacggc gcaaacataa agaatcttat
     1861 gcctgcctga cacagggctg tctttagctg gttatcagta atggcacttt tgagtcccca
     1921 agctgctggc ctccccttcc ttgcttgggt gcttggtgca taatagtggg agccagattg
     1981 gtatggagtt ggagatgagg tgcttgaaca gaatgaagaa acttaggtag ggcctcgcca
     2041 gctctaccta ctataagatg ctggctgagt aaggacacag gatttaaaga ttaatattct
     2101 tatcccctac tcttttttcc cctcttgatt aaggtgctct tctcattttg cttttccctg
     2161 agaactttag ccatcagatg aggctcctta gttcactgtg gttgtttgtt tccccataat
     2221 ggctctaggc tatttgccta ttccttataa accagcatca ggggagagat tctattttat
     2281 aaggggggaa catgttttca caaactgaaa agccctcata agtttctttt ttgaaggtag
     2341 aatctggttc attccatccc aaacatcagg actcacagac tgaaggcatt tctttctagg
     2401 ctctgagatg aaatgagaga gaaaagaaaa aaaagaggaa aaacagatac caatttttag
     2461 aactactgtt tagaactttt ctcaaggcac atgaaatact tgaaaatgtc tcctttatgt
     2521 tatttatgat gttttgtaca atgtttttat tactgtatcg ttttataaat ggaggtgcag
     2581 gatatcacct gaattattaa tgaatggcca ggaagtaatt ttcttctcat tcttttaaaa
     2641 ctactgcctt tgaagtgcac acacatgcat acctgaacac tgaaaggatt tttccagtat
     2701 aaattacatg catgggcacc tttgtggctt ttaagccatt agatgtaata ggctgcaaaa
     2761 tgaagacacc ggagtgtgtg tatacgaatc tcaatgtatt aaatgtatag gtttcctcag
     2821 ttgtacactt tttgtctctc tggcagtctt gctttcattg tccccagagt tcctcatcag
     2881 cgcccctttc tgttatatgc agttccacac tttgtctcta gttaactcca ggatccaaac
     2941 gtggtaactc tattggtctt gccctattag aactgttatg actttcagat tgtatctgta
     3001 ctcacagact gctgtctcac caataggtct ggaaagtcat tctgaatgag aagtaaatta
     3061 ttttatgtaa tact
//
LOCUS       XM_032651770            5671 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of G protein signaling 4
            (RGS4), transcript variant X2, mRNA.
ACCESSION   XM_032651770
VERSION     XM_032651770.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5671
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5671
                     /gene="RGS4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 53 long SRA reads, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763699"
     CDS             2983..3648
                     /gene="RGS4"
                     /codon_start=1
                     /product="regulator of G-protein signaling 4 isoform X2"
                     /protein_id="XP_032507661.1"
                     /db_xref="GeneID:116763699"
                     /translation="MSPLNCTIRVSSKESCVSLFFFFFFPPHLCSAKDMKHRLGFLLQ
                     KSDSCEHNSSHSKRDKVVICQRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSE
                     ENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEP
                     TITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLANLSSCGSEKQKGAKSSTDCPSLVP
                     QCA"
     misc_feature    3217..3558
                     /gene="RGS4"
                     /note="Regulator of G protein signaling (RGS) domain found
                     in the RGS4 protein; Region: RGS_RGS4; cd08714"
                     /db_xref="CDD:188669"
     misc_feature    order(3277..3282,3289..3294,3406..3408,3412..3414,
                     3421..3423,3430..3432,3505..3507,3517..3519)
                     /gene="RGS4"
                     /note="G-alpha-i1 interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:188669"
ORIGIN      
        1 agctcagagg attctgacag tatctttacc ggagaaaagg caaagtgtgc tcagaacaga
       61 agccacagct ctccctgctg catttctttc ctaacgtgaa tcccacacta cacaagatgt
      121 gcaaaggact tgcaggtctg ccggcttctt gcttgaggag gtaagattat tttcagccac
      181 taaaccagat agtgttaaac tttcagatag actttttaag ttatttgcat atcctactta
      241 ctaacctggt tctttggaat tagaaacaat gtggtgagga gagcatcagc ctcctagctt
      301 tccttcaaga ctagctagaa attgtgactt gggaagtgtt cactccaaat tttggcatcc
      361 catatgttgc tttctatgac cttggtcttg aggactgttc tgatcctctg accaagctag
      421 ttctaattaa gaagtgatat gaggtttttg gactgtatac agtggtctgt aatgtctcta
      481 cctatgttac tgctatttga atatcactga ggtacgtaga atcatgggtc tgggctttct
      541 tattgtatac tagatctcat ttttggggag gatacctcag aatgaagttt ggctacatca
      601 ccagaaaggc actatgctgt ctgtgtgatg ctgcagtatc tttcactctg tgtccttata
      661 agcaaatgct acaataaaat aagagtttca aaactaggtc tcccttatct ctctgcccct
      721 acctctagtt ctcgaaatgc catatgtgat tggtggttga gaagtattga tcataacaaa
      781 tcagctaagg gctctgtgga agatctcatc ttaaaggcat tgttttgtca acgtactgtc
      841 tcttgattaa aaaaaaaaaa ccttaaagat atgcagctac tcatatgtct ttcccgtttt
      901 aaaaaagata taaataaatg ctttcataga atgctcatat attagttagc tgaaaaacta
      961 caaaactagt gcatattaca ttacttaatc ttataaagta aaaagtcaat ttgtacatgt
     1021 accaccccct ctcttgttcc tgtgcaaacc ttaaatttgc aggtgaagtc accttaaatt
     1081 tcaattcaga attatctcag aaggcacagt cttttgtata atcctaagga gtttacctcc
     1141 tgtcattcag gagtatgaaa aaataatctc tttttttttt cattctttca tggctacttt
     1201 aaaatgaatc aggagggtct ggcagacagt acttatgaaa acagtggccc tgacctccac
     1261 cattaatttc ctgaactgaa tagagcaaat caatccaagc ttcagttaac tcatctagaa
     1321 aattaatcat acaaaataca ggagtgtcag gagaaggtta tgctctggta aatattttag
     1381 gagacaggtg agtaattact ctagagcttt gccttccagg agctaagagg ctaacctggg
     1441 gaggtaaact ctatatcagc agggtcaact gctcttccct ttcctcactg gtgaactgtg
     1501 aatcatcttg tccagcaccg tcattctcac attggtgcct gaggctccag agggaacgtg
     1561 aaatgctcaa ggtcacgtag gtggtgggtg gcagagtgca gatcaaatcc aggtttctta
     1621 cttcagaggt cagtggagtc atcttggttt ttatttctat ggttctattg tgttattagg
     1681 acaagtgtaa tgtacttgtt aagagtactt tcaagtcttc acgaaaagat tctgcgttgg
     1741 tcaataactg tcagatctca gctggacctg gcatatggaa acatgagatg atttctattt
     1801 tgacccaatc acaatatact tacattatca ccttagaatc actgcaggct tcatgattag
     1861 atcttgctat cactaaggaa gattttgtat cccgtgacca cttggggaaa cagaggaggg
     1921 agaacagtct cgtgagggaa agaagataat ataatggatt ttaaactttc tggagaaatg
     1981 cacatagata aggcattatt atatcagtag ccatcctaaa atgtcctttt atccttgtgg
     2041 cttcattttc ctccctctaa acaggaacaa ctcgtcattc atttagtctt tcatttcctt
     2101 caaaacaaca tttctccttt aaaactgtat ctcagctttt ataagaaaag agatccaagc
     2161 aaaagaataa ataacaaaaa gtgaggaggt tgagctcaaa gcttattaaa aggtcctcct
     2221 ttttgaatga gtcacatgcc ctgccgtacc ctagcgacct attaaacagt gaccataagc
     2281 tggaagctct gctccaatta aacaatcagg agcttcagtg atgactcttg cttgcttctc
     2341 cttattattg tttttaagcc tcaaatgtgc tttatagtgt aaatatcctt agagtgtaga
     2401 tgttaaaaag gaaagtagta gcaatagcag gaaagcttgc tttccttaga agcaaacctg
     2461 caggagctca ggtttcagca tgaacatttg tgtttacccc ctcattttcc actcctctct
     2521 gctggagctg cacacctcca taatgtgact tgctcaccac atccaggctg gaattgaaca
     2581 aacccttact tcctcaggtt cttctccatt gctctgctag cagtgaggca gatggaagta
     2641 gcaactaccc tccagaaggt ggcgcacaac aagcaagtgc tatatttcac cgttcactgc
     2701 ttgctctcca atatctaaaa cttactcaga gaatagtcaa gttttgaatg tgtttctgct
     2761 gaagatacct aagtgttcct ttggtcaaaa tgacaggttt acagaagagg ctccgcaggt
     2821 agactgaagg gtcaggattc cagttactga tgaaggaggc tgtgctccag gttttgcagt
     2881 aagtcatagg cagaagcaga agcagaatct cattttcctg agagttcttg ccagcttcaa
     2941 ctcctatatc ctaaataagt tacccctgcc cctttactag tgatgagccc tttgaactgt
     3001 accattaggg tatcttctaa agagagctgt gtgtcattat tctttttttt tttttttccc
     3061 cctcatctgt gcagtgcaaa agatatgaaa catcggctcg gtttcttgct gcagaagtct
     3121 gattcctgtg aacataattc ttcccacagc aagagggaca aagtggtgat ttgtcagagg
     3181 gtgagccaag aggaagtcaa aaagtgggct gaatcactgg aaaacctgat tagtcatgaa
     3241 tgtggactgg ccgctttcaa agctttcttg aagtctgaat acagtgagga gaacattgac
     3301 ttctggatca gctgtgaaga gtacaagaaa atcaaatcac cctctaaact aagtcccaag
     3361 gccaaaaaga tctataatga attcatctca gtccaggcaa ccaaagaggt aaacctggac
     3421 tcttgcacca gggaggagac aagtcgtaac atgctggagc ctacgataac ctgctttgat
     3481 gaggctcaga agaagatttt caacctgatg gaaaaggatt cataccgccg cttcctcaag
     3541 tcccgattct atcttgattt ggccaacctt tccagctgtg ggtcagagaa gcagaaagga
     3601 gccaaaagtt ctacagactg tccttccctg gtgccccagt gtgcctaatt cttgctcagt
     3661 ggtggaggct gaaatgccaa gactctgtgc ctggaaaacc tgaggccaaa tattgatctg
     3721 tattaagcat cagtgctttc ttcacattgt agcctagtgt tcatgctgct ggctatgtgt
     3781 gagtcactcc catacaaaaa ctagattttg ttttggtgtt ctggtgttca tcagggcagg
     3841 acctcattcc agtccaattt tcccaaattt cttttagggt gccatgtgag caagtatcca
     3901 aataatggcc ttgtgggtct ggattttctc tcctgccaac agtgtgacct caggttggtt
     3961 ggttggtggt tgggacactt catgtgacat ccacaggcac atgtgttctg ttaaccagca
     4021 ctttctccaa actcgagatg tttagatgag gttgatctat tttatgtaca tatgtgtgtg
     4081 catgtgtgtg cgtctgtgta tatatatata cacatgtaca tatgtacata cacacattct
     4141 gtatatatgt atgtatatat acatacatat atatttttgc aagaatggca ggaaagaccc
     4201 taggtgctca taactagagt gtgtgtacat acatacatgc gtgttctgat ccccagtctt
     4261 tcactctgca actgaacagg gcaaactaaa ccagctgccc tgcaggctaa gaaaggaatg
     4321 ctcacctgtg gaaagttgat tctgtaaaac tccatgagtt ttgctagaga aacatcccag
     4381 ggatttcatg cttagtttaa ccaccgacag tctccaagtt ggacagtatt ctacggcgca
     4441 aacataaaga atcttatgcc tgcctgacac agggctgtct ttagctggtt atcagtaatg
     4501 gcacttttga gtccccaagc tgctggcctc cccttccttg cttgggtgct tggtgcataa
     4561 tagtgggagc cagattggta tggagttgga gatgaggtgc ttgaacagaa tgaagaaact
     4621 taggtagggc ctcgccagct ctacctacta taagatgctg gctgagtaag gacacaggat
     4681 ttaaagatta atattcttat cccctactct tttttcccct cttgattaag gtgctcttct
     4741 cattttgctt ttccctgaga actttagcca tcagatgagg ctccttagtt cactgtggtt
     4801 gtttgtttcc ccataatggc tctaggctat ttgcctattc cttataaacc agcatcaggg
     4861 gagagattct attttataag gggggaacat gttttcacaa actgaaaagc cctcataagt
     4921 ttcttttttg aaggtagaat ctggttcatt ccatcccaaa catcaggact cacagactga
     4981 aggcatttct ttctaggctc tgagatgaaa tgagagagaa aagaaaaaaa agaggaaaaa
     5041 cagataccaa tttttagaac tactgtttag aacttttctc aaggcacatg aaatacttga
     5101 aaatgtctcc tttatgttat ttatgatgtt ttgtacaatg tttttattac tgtatcgttt
     5161 tataaatgga ggtgcaggat atcacctgaa ttattaatga atggccagga agtaattttc
     5221 ttctcattct tttaaaacta ctgcctttga agtgcacaca catgcatacc tgaacactga
     5281 aaggattttt ccagtataaa ttacatgcat gggcaccttt gtggctttta agccattaga
     5341 tgtaataggc tgcaaaatga agacaccgga gtgtgtgtat acgaatctca atgtattaaa
     5401 tgtataggtt tcctcagttg tacacttttt gtctctctgg cagtcttgct ttcattgtcc
     5461 ccagagttcc tcatcagcgc ccctttctgt tatatgcagt tccacacttt gtctctagtt
     5521 aactccagga tccaaacgtg gtaactctat tggtcttgcc ctattagaac tgttatgact
     5581 ttcagattgt atctgtactc acagactgct gtctcaccaa taggtctgga aagtcattct
     5641 gaatgagaag taaattattt tatgtaatac t
//
LOCUS       XM_032651781            2765 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of G protein signaling 4
            (RGS4), transcript variant X3, mRNA.
ACCESSION   XM_032651781
VERSION     XM_032651781.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2765
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2765
                     /gene="RGS4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 42 long SRA reads, 25
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763699"
     CDS             122..739
                     /gene="RGS4"
                     /codon_start=1
                     /product="regulator of G-protein signaling 4 isoform X3"
                     /protein_id="XP_032507672.1"
                     /db_xref="GeneID:116763699"
                     /translation="MCKGLAGLPASCLRSAKDMKHRLGFLLQKSDSCEHNSSHSKRDK
                     VVICQRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIK
                     SPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLM
                     EKDSYRRFLKSRFYLDLANLSSCGSEKQKGAKSSTDCPSLVPQCA"
     misc_feature    308..649
                     /gene="RGS4"
                     /note="Regulator of G protein signaling (RGS) domain found
                     in the RGS4 protein; Region: RGS_RGS4; cd08714"
                     /db_xref="CDD:188669"
     misc_feature    order(368..373,380..385,497..499,503..505,512..514,
                     521..523,596..598,608..610)
                     /gene="RGS4"
                     /note="G-alpha-i1 interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:188669"
ORIGIN      
        1 ggagaagctc agaggattct gacagtatct ttaccggaga aaaggcaaag tgtgctcaga
       61 acagaagcca cagctctccc tgctgcattt ctttcctaac gtgaatccca cactacacaa
      121 gatgtgcaaa ggacttgcag gtctgccggc ttcttgcttg aggagtgcaa aagatatgaa
      181 acatcggctc ggtttcttgc tgcagaagtc tgattcctgt gaacataatt cttcccacag
      241 caagagggac aaagtggtga tttgtcagag ggtgagccaa gaggaagtca aaaagtgggc
      301 tgaatcactg gaaaacctga ttagtcatga atgtggactg gccgctttca aagctttctt
      361 gaagtctgaa tacagtgagg agaacattga cttctggatc agctgtgaag agtacaagaa
      421 aatcaaatca ccctctaaac taagtcccaa ggccaaaaag atctataatg aattcatctc
      481 agtccaggca accaaagagg taaacctgga ctcttgcacc agggaggaga caagtcgtaa
      541 catgctggag cctacgataa cctgctttga tgaggctcag aagaagattt tcaacctgat
      601 ggaaaaggat tcataccgcc gcttcctcaa gtcccgattc tatcttgatt tggccaacct
      661 ttccagctgt gggtcagaga agcagaaagg agccaaaagt tctacagact gtccttccct
      721 ggtgccccag tgtgcctaat tcttgctcag tggtggaggc tgaaatgcca agactctgtg
      781 cctggaaaac ctgaggccaa atattgatct gtattaagca tcagtgcttt cttcacattg
      841 tagcctagtg ttcatgctgc tggctatgtg tgagtcactc ccatacaaaa actagatttt
      901 gttttggtgt tctggtgttc atcagggcag gacctcattc cagtccaatt ttcccaaatt
      961 tcttttaggg tgccatgtga gcaagtatcc aaataatggc cttgtgggtc tggattttct
     1021 ctcctgccaa cagtgtgacc tcaggttggt tggttggtgg ttgggacact tcatgtgaca
     1081 tccacaggca catgtgttct gttaaccagc actttctcca aactcgagat gtttagatga
     1141 ggttgatcta ttttatgtac atatgtgtgt gcatgtgtgt gcgtctgtgt atatatatat
     1201 acacatgtac atatgtacat acacacattc tgtatatatg tatgtatata tacatacata
     1261 tatatttttg caagaatggc aggaaagacc ctaggtgctc ataactagag tgtgtgtaca
     1321 tacatacatg cgtgttctga tccccagtct ttcactctgc aactgaacag ggcaaactaa
     1381 accagctgcc ctgcaggcta agaaaggaat gctcacctgt ggaaagttga ttctgtaaaa
     1441 ctccatgagt tttgctagag aaacatccca gggatttcat gcttagttta accaccgaca
     1501 gtctccaagt tggacagtat tctacggcgc aaacataaag aatcttatgc ctgcctgaca
     1561 cagggctgtc tttagctggt tatcagtaat ggcacttttg agtccccaag ctgctggcct
     1621 ccccttcctt gcttgggtgc ttggtgcata atagtgggag ccagattggt atggagttgg
     1681 agatgaggtg cttgaacaga atgaagaaac ttaggtaggg cctcgccagc tctacctact
     1741 ataagatgct ggctgagtaa ggacacagga tttaaagatt aatattctta tcccctactc
     1801 ttttttcccc tcttgattaa ggtgctcttc tcattttgct tttccctgag aactttagcc
     1861 atcagatgag gctccttagt tcactgtggt tgtttgtttc cccataatgg ctctaggcta
     1921 tttgcctatt ccttataaac cagcatcagg ggagagattc tattttataa ggggggaaca
     1981 tgttttcaca aactgaaaag ccctcataag tttctttttt gaaggtagaa tctggttcat
     2041 tccatcccaa acatcaggac tcacagactg aaggcatttc tttctaggct ctgagatgaa
     2101 atgagagaga aaagaaaaaa aagaggaaaa acagatacca atttttagaa ctactgttta
     2161 gaacttttct caaggcacat gaaatacttg aaaatgtctc ctttatgtta tttatgatgt
     2221 tttgtacaat gtttttatta ctgtatcgtt ttataaatgg aggtgcagga tatcacctga
     2281 attattaatg aatggccagg aagtaatttt cttctcattc ttttaaaact actgcctttg
     2341 aagtgcacac acatgcatac ctgaacactg aaaggatttt tccagtataa attacatgca
     2401 tgggcacctt tgtggctttt aagccattag atgtaatagg ctgcaaaatg aagacaccgg
     2461 agtgtgtgta tacgaatctc aatgtattaa atgtataggt ttcctcagtt gtacactttt
     2521 tgtctctctg gcagtcttgc tttcattgtc cccagagttc ctcatcagcg cccctttctg
     2581 ttatatgcag ttccacactt tgtctctagt taactccagg atccaaacgt ggtaactcta
     2641 ttggtcttgc cctattagaa ctgttatgac tttcagattg tatctgtact cacagactgc
     2701 tgtctcacca ataggtctgg aaagtcattc tgaatgagaa gtaaattatt ttatgtaata
     2761 ctttt
//
LOCUS       XM_032651787            5475 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of G protein signaling 4
            (RGS4), transcript variant X4, mRNA.
ACCESSION   XM_032651787
VERSION     XM_032651787.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5475
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5475
                     /gene="RGS4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 34 long SRA reads, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763699"
     CDS             2850..3452
                     /gene="RGS4"
                     /codon_start=1
                     /product="regulator of G-protein signaling 4 isoform X4"
                     /protein_id="XP_032507678.1"
                     /db_xref="GeneID:116763699"
                     /translation="MKEAVLQVLHAKDMKHRLGFLLQKSDSCEHNSSHSKRDKVVICQ
                     RVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKL
                     SPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSY
                     RRFLKSRFYLDLANLSSCGSEKQKGAKSSTDCPSLVPQCA"
     misc_feature    3021..3362
                     /gene="RGS4"
                     /note="Regulator of G protein signaling (RGS) domain found
                     in the RGS4 protein; Region: RGS_RGS4; cd08714"
                     /db_xref="CDD:188669"
     misc_feature    order(3081..3086,3093..3098,3210..3212,3216..3218,
                     3225..3227,3234..3236,3309..3311,3321..3323)
                     /gene="RGS4"
                     /note="G-alpha-i1 interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:188669"
ORIGIN      
        1 agctcagagg attctgacag tatctttacc ggagaaaagg caaagtgtgc tcagaacaga
       61 agccacagct ctccctgctg catttctttc ctaacgtgaa tcccacacta cacaagatgt
      121 gcaaaggact tgcaggtctg ccggcttctt gcttgaggag gtaagattat tttcagccac
      181 taaaccagat agtgttaaac tttcagatag actttttaag ttatttgcat atcctactta
      241 ctaacctggt tctttggaat tagaaacaat gtggtgagga gagcatcagc ctcctagctt
      301 tccttcaaga ctagctagaa attgtgactt gggaagtgtt cactccaaat tttggcatcc
      361 catatgttgc tttctatgac cttggtcttg aggactgttc tgatcctctg accaagctag
      421 ttctaattaa gaagtgatat gaggtttttg gactgtatac agtggtctgt aatgtctcta
      481 cctatgttac tgctatttga atatcactga ggtacgtaga atcatgggtc tgggctttct
      541 tattgtatac tagatctcat ttttggggag gatacctcag aatgaagttt ggctacatca
      601 ccagaaaggc actatgctgt ctgtgtgatg ctgcagtatc tttcactctg tgtccttata
      661 agcaaatgct acaataaaat aagagtttca aaactaggtc tcccttatct ctctgcccct
      721 acctctagtt ctcgaaatgc catatgtgat tggtggttga gaagtattga tcataacaaa
      781 tcagctaagg gctctgtgga agatctcatc ttaaaggcat tgttttgtca acgtactgtc
      841 tcttgattaa aaaaaaaaaa ccttaaagat atgcagctac tcatatgtct ttcccgtttt
      901 aaaaaagata taaataaatg ctttcataga atgctcatat attagttagc tgaaaaacta
      961 caaaactagt gcatattaca ttacttaatc ttataaagta aaaagtcaat ttgtacatgt
     1021 accaccccct ctcttgttcc tgtgcaaacc ttaaatttgc aggtgaagtc accttaaatt
     1081 tcaattcaga attatctcag aaggcacagt cttttgtata atcctaagga gtttacctcc
     1141 tgtcattcag gagtatgaaa aaataatctc tttttttttt cattctttca tggctacttt
     1201 aaaatgaatc aggagggtct ggcagacagt acttatgaaa acagtggccc tgacctccac
     1261 cattaatttc ctgaactgaa tagagcaaat caatccaagc ttcagttaac tcatctagaa
     1321 aattaatcat acaaaataca ggagtgtcag gagaaggtta tgctctggta aatattttag
     1381 gagacaggtg agtaattact ctagagcttt gccttccagg agctaagagg ctaacctggg
     1441 gaggtaaact ctatatcagc agggtcaact gctcttccct ttcctcactg gtgaactgtg
     1501 aatcatcttg tccagcaccg tcattctcac attggtgcct gaggctccag agggaacgtg
     1561 aaatgctcaa ggtcacgtag gtggtgggtg gcagagtgca gatcaaatcc aggtttctta
     1621 cttcagaggt cagtggagtc atcttggttt ttatttctat ggttctattg tgttattagg
     1681 acaagtgtaa tgtacttgtt aagagtactt tcaagtcttc acgaaaagat tctgcgttgg
     1741 tcaataactg tcagatctca gctggacctg gcatatggaa acatgagatg atttctattt
     1801 tgacccaatc acaatatact tacattatca ccttagaatc actgcaggct tcatgattag
     1861 atcttgctat cactaaggaa gattttgtat cccgtgacca cttggggaaa cagaggaggg
     1921 agaacagtct cgtgagggaa agaagataat ataatggatt ttaaactttc tggagaaatg
     1981 cacatagata aggcattatt atatcagtag ccatcctaaa atgtcctttt atccttgtgg
     2041 cttcattttc ctccctctaa acaggaacaa ctcgtcattc atttagtctt tcatttcctt
     2101 caaaacaaca tttctccttt aaaactgtat ctcagctttt ataagaaaag agatccaagc
     2161 aaaagaataa ataacaaaaa gtgaggaggt tgagctcaaa gcttattaaa aggtcctcct
     2221 ttttgaatga gtcacatgcc ctgccgtacc ctagcgacct attaaacagt gaccataagc
     2281 tggaagctct gctccaatta aacaatcagg agcttcagtg atgactcttg cttgcttctc
     2341 cttattattg tttttaagcc tcaaatgtgc tttatagtgt aaatatcctt agagtgtaga
     2401 tgttaaaaag gaaagtagta gcaatagcag gaaagcttgc tttccttaga agcaaacctg
     2461 caggagctca ggtttcagca tgaacatttg tgtttacccc ctcattttcc actcctctct
     2521 gctggagctg cacacctcca taatgtgact tgctcaccac atccaggctg gaattgaaca
     2581 aacccttact tcctcaggtt cttctccatt gctctgctag cagtgaggca gatggaagta
     2641 gcaactaccc tccagaaggt ggcgcacaac aagcaagtgc tatatttcac cgttcactgc
     2701 ttgctctcca atatctaaaa cttactcaga gaatagtcaa gttttgaatg tgtttctgct
     2761 gaagatacct aagtgttcct ttggtcaaaa tgacaggttt acagaagagg ctccgcaggt
     2821 agactgaagg gtcaggattc cagttactga tgaaggaggc tgtgctccag gttttgcatg
     2881 caaaagatat gaaacatcgg ctcggtttct tgctgcagaa gtctgattcc tgtgaacata
     2941 attcttccca cagcaagagg gacaaagtgg tgatttgtca gagggtgagc caagaggaag
     3001 tcaaaaagtg ggctgaatca ctggaaaacc tgattagtca tgaatgtgga ctggccgctt
     3061 tcaaagcttt cttgaagtct gaatacagtg aggagaacat tgacttctgg atcagctgtg
     3121 aagagtacaa gaaaatcaaa tcaccctcta aactaagtcc caaggccaaa aagatctata
     3181 atgaattcat ctcagtccag gcaaccaaag aggtaaacct ggactcttgc accagggagg
     3241 agacaagtcg taacatgctg gagcctacga taacctgctt tgatgaggct cagaagaaga
     3301 ttttcaacct gatggaaaag gattcatacc gccgcttcct caagtcccga ttctatcttg
     3361 atttggccaa cctttccagc tgtgggtcag agaagcagaa aggagccaaa agttctacag
     3421 actgtccttc cctggtgccc cagtgtgcct aattcttgct cagtggtgga ggctgaaatg
     3481 ccaagactct gtgcctggaa aacctgaggc caaatattga tctgtattaa gcatcagtgc
     3541 tttcttcaca ttgtagccta gtgttcatgc tgctggctat gtgtgagtca ctcccataca
     3601 aaaactagat tttgttttgg tgttctggtg ttcatcaggg caggacctca ttccagtcca
     3661 attttcccaa atttctttta gggtgccatg tgagcaagta tccaaataat ggccttgtgg
     3721 gtctggattt tctctcctgc caacagtgtg acctcaggtt ggttggttgg tggttgggac
     3781 acttcatgtg acatccacag gcacatgtgt tctgttaacc agcactttct ccaaactcga
     3841 gatgtttaga tgaggttgat ctattttatg tacatatgtg tgtgcatgtg tgtgcgtctg
     3901 tgtatatata tatacacatg tacatatgta catacacaca ttctgtatat atgtatgtat
     3961 atatacatac atatatattt ttgcaagaat ggcaggaaag accctaggtg ctcataacta
     4021 gagtgtgtgt acatacatac atgcgtgttc tgatccccag tctttcactc tgcaactgaa
     4081 cagggcaaac taaaccagct gccctgcagg ctaagaaagg aatgctcacc tgtggaaagt
     4141 tgattctgta aaactccatg agttttgcta gagaaacatc ccagggattt catgcttagt
     4201 ttaaccaccg acagtctcca agttggacag tattctacgg cgcaaacata aagaatctta
     4261 tgcctgcctg acacagggct gtctttagct ggttatcagt aatggcactt ttgagtcccc
     4321 aagctgctgg cctccccttc cttgcttggg tgcttggtgc ataatagtgg gagccagatt
     4381 ggtatggagt tggagatgag gtgcttgaac agaatgaaga aacttaggta gggcctcgcc
     4441 agctctacct actataagat gctggctgag taaggacaca ggatttaaag attaatattc
     4501 ttatccccta ctcttttttc ccctcttgat taaggtgctc ttctcatttt gcttttccct
     4561 gagaacttta gccatcagat gaggctcctt agttcactgt ggttgtttgt ttccccataa
     4621 tggctctagg ctatttgcct attccttata aaccagcatc aggggagaga ttctatttta
     4681 taagggggga acatgttttc acaaactgaa aagccctcat aagtttcttt tttgaaggta
     4741 gaatctggtt cattccatcc caaacatcag gactcacaga ctgaaggcat ttctttctag
     4801 gctctgagat gaaatgagag agaaaagaaa aaaaagagga aaaacagata ccaattttta
     4861 gaactactgt ttagaacttt tctcaaggca catgaaatac ttgaaaatgt ctcctttatg
     4921 ttatttatga tgttttgtac aatgttttta ttactgtatc gttttataaa tggaggtgca
     4981 ggatatcacc tgaattatta atgaatggcc aggaagtaat tttcttctca ttcttttaaa
     5041 actactgcct ttgaagtgca cacacatgca tacctgaaca ctgaaaggat ttttccagta
     5101 taaattacat gcatgggcac ctttgtggct tttaagccat tagatgtaat aggctgcaaa
     5161 atgaagacac cggagtgtgt gtatacgaat ctcaatgtat taaatgtata ggtttcctca
     5221 gttgtacact ttttgtctct ctggcagtct tgctttcatt gtccccagag ttcctcatca
     5281 gcgccccttt ctgttatatg cagttccaca ctttgtctct agttaactcc aggatccaaa
     5341 cgtggtaact ctattggtct tgccctatta gaactgttat gactttcaga ttgtatctgt
     5401 actcacagac tgctgtctca ccaataggtc tggaaagtca ttctgaatga gaagtaaatt
     5461 attttatgta atact
//
LOCUS       XM_032651794            2844 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of G protein signaling 4
            (RGS4), transcript variant X5, mRNA.
ACCESSION   XM_032651794
VERSION     XM_032651794.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2844
                     /gene="RGS4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 32 long SRA reads, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763699"
     CDS             219..821
                     /gene="RGS4"
                     /codon_start=1
                     /product="regulator of G-protein signaling 4 isoform X4"
                     /protein_id="XP_032507685.1"
                     /db_xref="GeneID:116763699"
                     /translation="MKEAVLQVLHAKDMKHRLGFLLQKSDSCEHNSSHSKRDKVVICQ
                     RVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKL
                     SPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSY
                     RRFLKSRFYLDLANLSSCGSEKQKGAKSSTDCPSLVPQCA"
     misc_feature    390..731
                     /gene="RGS4"
                     /note="Regulator of G protein signaling (RGS) domain found
                     in the RGS4 protein; Region: RGS_RGS4; cd08714"
                     /db_xref="CDD:188669"
     misc_feature    order(450..455,462..467,579..581,585..587,594..596,
                     603..605,678..680,690..692)
                     /gene="RGS4"
                     /note="G-alpha-i1 interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:188669"
ORIGIN      
        1 ggagaagctc agaggattct gacagtatct ttaccggaga aaaggcaaag tgtgctcaga
       61 acagaagcca cagctctccc tgctgcattt ctttcctaac gtgaatccca cactacacaa
      121 gatgtgcaaa ggacttgcag gtctgccggc ttcttgcttg aggaggttta cagaagaggc
      181 tccgcaggta gactgaaggg tcaggattcc agttactgat gaaggaggct gtgctccagg
      241 ttttgcatgc aaaagatatg aaacatcggc tcggtttctt gctgcagaag tctgattcct
      301 gtgaacataa ttcttcccac agcaagaggg acaaagtggt gatttgtcag agggtgagcc
      361 aagaggaagt caaaaagtgg gctgaatcac tggaaaacct gattagtcat gaatgtggac
      421 tggccgcttt caaagctttc ttgaagtctg aatacagtga ggagaacatt gacttctgga
      481 tcagctgtga agagtacaag aaaatcaaat caccctctaa actaagtccc aaggccaaaa
      541 agatctataa tgaattcatc tcagtccagg caaccaaaga ggtaaacctg gactcttgca
      601 ccagggagga gacaagtcgt aacatgctgg agcctacgat aacctgcttt gatgaggctc
      661 agaagaagat tttcaacctg atggaaaagg attcataccg ccgcttcctc aagtcccgat
      721 tctatcttga tttggccaac ctttccagct gtgggtcaga gaagcagaaa ggagccaaaa
      781 gttctacaga ctgtccttcc ctggtgcccc agtgtgccta attcttgctc agtggtggag
      841 gctgaaatgc caagactctg tgcctggaaa acctgaggcc aaatattgat ctgtattaag
      901 catcagtgct ttcttcacat tgtagcctag tgttcatgct gctggctatg tgtgagtcac
      961 tcccatacaa aaactagatt ttgttttggt gttctggtgt tcatcagggc aggacctcat
     1021 tccagtccaa ttttcccaaa tttcttttag ggtgccatgt gagcaagtat ccaaataatg
     1081 gccttgtggg tctggatttt ctctcctgcc aacagtgtga cctcaggttg gttggttggt
     1141 ggttgggaca cttcatgtga catccacagg cacatgtgtt ctgttaacca gcactttctc
     1201 caaactcgag atgtttagat gaggttgatc tattttatgt acatatgtgt gtgcatgtgt
     1261 gtgcgtctgt gtatatatat atacacatgt acatatgtac atacacacat tctgtatata
     1321 tgtatgtata tatacataca tatatatttt tgcaagaatg gcaggaaaga ccctaggtgc
     1381 tcataactag agtgtgtgta catacataca tgcgtgttct gatccccagt ctttcactct
     1441 gcaactgaac agggcaaact aaaccagctg ccctgcaggc taagaaagga atgctcacct
     1501 gtggaaagtt gattctgtaa aactccatga gttttgctag agaaacatcc cagggatttc
     1561 atgcttagtt taaccaccga cagtctccaa gttggacagt attctacggc gcaaacataa
     1621 agaatcttat gcctgcctga cacagggctg tctttagctg gttatcagta atggcacttt
     1681 tgagtcccca agctgctggc ctccccttcc ttgcttgggt gcttggtgca taatagtggg
     1741 agccagattg gtatggagtt ggagatgagg tgcttgaaca gaatgaagaa acttaggtag
     1801 ggcctcgcca gctctaccta ctataagatg ctggctgagt aaggacacag gatttaaaga
     1861 ttaatattct tatcccctac tcttttttcc cctcttgatt aaggtgctct tctcattttg
     1921 cttttccctg agaactttag ccatcagatg aggctcctta gttcactgtg gttgtttgtt
     1981 tccccataat ggctctaggc tatttgccta ttccttataa accagcatca ggggagagat
     2041 tctattttat aaggggggaa catgttttca caaactgaaa agccctcata agtttctttt
     2101 ttgaaggtag aatctggttc attccatccc aaacatcagg actcacagac tgaaggcatt
     2161 tctttctagg ctctgagatg aaatgagaga gaaaagaaaa aaaagaggaa aaacagatac
     2221 caatttttag aactactgtt tagaactttt ctcaaggcac atgaaatact tgaaaatgtc
     2281 tcctttatgt tatttatgat gttttgtaca atgtttttat tactgtatcg ttttataaat
     2341 ggaggtgcag gatatcacct gaattattaa tgaatggcca ggaagtaatt ttcttctcat
     2401 tcttttaaaa ctactgcctt tgaagtgcac acacatgcat acctgaacac tgaaaggatt
     2461 tttccagtat aaattacatg catgggcacc tttgtggctt ttaagccatt agatgtaata
     2521 ggctgcaaaa tgaagacacc ggagtgtgtg tatacgaatc tcaatgtatt aaatgtatag
     2581 gtttcctcag ttgtacactt tttgtctctc tggcagtctt gctttcattg tccccagagt
     2641 tcctcatcag cgcccctttc tgttatatgc agttccacac tttgtctcta gttaactcca
     2701 ggatccaaac gtggtaactc tattggtctt gccctattag aactgttatg actttcagat
     2761 tgtatctgta ctcacagact gctgtctcac caataggtct ggaaagtcat tctgaatgag
     2821 aagtaaatta ttttatgtaa tact
//
LOCUS       XM_032651804            4000 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase cation transporting 13A2
            (ATP13A2), transcript variant X1, mRNA.
ACCESSION   XM_032651804
VERSION     XM_032651804.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4000
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4000
                     /gene="ATP13A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 19 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763729"
     CDS             192..3716
                     /gene="ATP13A2"
                     /codon_start=1
                     /product="cation-transporting ATPase 13A2 isoform X1"
                     /protein_id="XP_032507695.1"
                     /db_xref="GeneID:116763729"
                     /translation="MSADSSPLVGNTPAGYGTLTIETSIDPLSSSVSSVRLSGYCGSP
                     WRVIGYHIVVWMMAGIPLLLFRWKPMWRVRLRLQPCSLARAETLVIEIRDKEDSSWQL
                     YTVQVQTEAISKDSLELPPQTQAEDGRSQAAVGTLPEGTWKDTAQLHRTEEAQRTLRY
                     YLFRGQRYVWIETQQAFCRVSLLDHGRTCDDLHCSSTGLSLQDQTVRKTIYGPNVISV
                     PVKSYPQLLVDEALNPYYGFQAFSIGLWLADYYYWYALCIFLISMVSICVSIYKTRKQ
                     SQTLRDMVQLSVQVCVCRPGGEEEWVDSSELVPGDCLVLPQEGGLMPCDAALVAGECM
                     VNESSLTGESVPVLKTALPEGPVPYFPETHQRHTLFCGTLILQARAFVGPHALAVVTQ
                     TGFCTAKGALVSSILHPRPINFKFYKHSVKFVAALSVLALLGTVYSIFILHRNHVPLD
                     EIVIRALDLVTVAVPPALPAAMTVCTLYAQNRLRSQGVFCTHPMRINLGGKLRLVCFD
                     KTGTLTEDSLDVMGVVPLKGQEFLPLVPEPRRLPMGPLLRALATCHTLSRLRDTPVGD
                     PMDLKMVESTGWVLEEGSAADSTFGTQVLAVMKPPLQELHLQGMEEPLVPVSILSHFP
                     FSSALQRMSVVVAWPGAARPEACVKGSPELVAGLCDPKTVPTDFAQMLQSYTAAGYRV
                     VALASKPLPIAPNMEAAQQLTRDAVEWRLSLLGLLVLQNLLKPQTTPVIQALRRTCIR
                     TVMVTGDNLQTAVTVAQGCGMVGPQERLVIIHANPPERGQPASLELLPVESSAAVNGA
                     QDPDQAASYTMEPDPRSSHLALSGSTFGVLMKHFPKLLPKVLVQGTVFARMAPEQKTE
                     LVCELQKLQYCVGMCGDGANDCGALKAADVGISLSQAEASVVSPFTSSVANIECVPMV
                     IREGRCSLDTSFSVFKYMALYSLTQFISVLILYTVNTNLGDVQFLVIDLAITTTVAVL
                     MSRTGPALALGRARPPGALLSVPALSSLLLQVALVASVQLGGYFLTVAQPWFVPLNRT
                     VPAPDNLPNYENTVVFCLSSFQYLILAVAVSKGAPFRRPLYTNVPFLVALVLLGSVLV
                     GLLLAPGLLQGVLALRTIADTYFKLLLLGLVAFNFVGAFMLESVLDQCLPGCLRWLRP
                     KRASKKRFKQLEQELAEQPWPPAAGPGR"
     misc_feature    306..3545
                     /gene="ATP13A2"
                     /note="P-type ATPase of unknown pump specificity (type V);
                     Region: P-ATPase-V; TIGR01657"
                     /db_xref="CDD:273738"
ORIGIN      
        1 agagggcggg gcggggcttg gcggtgcgca gagcctgact gcggcacctt cgccgccgct
       61 ccagccgctg ggtcctgcag gtgtcccggg ccgcccagct ccgcagcgcc ccgcgccccc
      121 ggccttccgc ctcggccccg accgcggggc atcgcgacgc ccgggcccgg cgatgagcgc
      181 gaggagccgc catgagcgca gacagcagcc cgctcgtggg caacacgccc gccggttatg
      241 ggaccctgac gatagagaca tctatagatc ccctcagctc ctcagtttca tccgtgaggc
      301 tcagcggcta ctgtggcagt ccatggaggg tcatcggcta tcacatcgtg gtctggatga
      361 tggcggggat ccctctgctg ctcttccgat ggaagcccat gtggcgggtg cggctgcggc
      421 tccagccgtg cagcctggcc cgcgccgaaa ccctcgttat cgaaataaga gacaaagagg
      481 atagttcgtg gcagctctat actgtccagg tgcagactga ggccatcagc aaagacagcc
      541 tggagctgcc cccacagacc caggcggagg acggccggag ccaggcagct gtggggacac
      601 taccagaggg gacatggaag gacaccgccc agctccacag gaccgaagag gcacagcgga
      661 cgctgcgcta ctaccttttc cggggccagc gctatgtctg gatcgagacc cagcaggcct
      721 tctgccgagt cagcctgctg gaccacggcc gcacctgtga cgacctccac tgctccagca
      781 ccggcctcag cctccaggac caaaccgtga ggaagaccat ctacggcccc aacgtgatca
      841 gtgtaccagt caagtcctat ccccagctgc tggtggacga ggcactgaac ccctactatg
      901 ggttccaggc cttcagcatc gggctgtggc tggctgacta ctactactgg tatgccctgt
      961 gcatcttcct gatctccatg gtctccatct gcgtgtcgat atacaagacc agaaagcaaa
     1021 gccagactct gagggacatg gtccagctgt ctgtacaggt gtgcgtgtgc cggcctgggg
     1081 gagaggagga atgggtcgac tccagtgagc tcgtgccggg agactgcctg gtgctgcccc
     1141 aggagggtgg gctgatgccc tgcgatgctg ccctggtggc tggcgagtgc atggtcaatg
     1201 agagctctct gacaggggag agcgttccag tgctgaagac cgccctgccg gagggaccgg
     1261 tgccctactt cccagagacc caccagcggc acacgctctt ctgtgggacc ctcatcttgc
     1321 aggcccgggc ctttgtagga ccccatgccc tggcagtggt gacccagaca gggttctgca
     1381 cggctaaagg ggccctggtg agctccatcc tgcatccccg gcccatcaac ttcaagttct
     1441 ataaacacag cgtgaagttt gtggctgccc tctccgtcct ggctctcctc ggcaccgtct
     1501 acagcatctt catcctccac cgcaaccacg tgcctctgga cgagatcgtg atccgggctc
     1561 tggacctggt gacggtggca gtgccgcccg ccctgcctgc cgccatgact gtgtgcacgc
     1621 tctacgccca gaaccggctg cggagccagg gcgtcttctg cacccacccg atgcgcatca
     1681 acctgggggg caagctccgg ctggtgtgtt tcgacaagac aggcacactc acagaggaca
     1741 gcttggacgt gatgggtgtg gtgcccctga aggggcagga gttcctgccg ctggtcccag
     1801 agccccgccg ccttcccatg gggcccctgc tccgggcact ggccacctgc cacaccctca
     1861 gccggctccg ggacacccca gtgggtgacc ccatggacct caagatggtg gaatctactg
     1921 gctgggtcct ggaggaggga tcagctgcgg actcgacatt tgggacccag gtcttagcgg
     1981 tgatgaaacc cccgcttcag gagctccacc tgcagggcat ggaggagccc ctggtgccgg
     2041 tcagcatcct cagccacttc cccttctcat cggctctaca gcgcatgagc gtggtggtgg
     2101 catggccggg ggcggctcgg cccgaggcct gcgtcaaggg ctcccccgag ctggtggcag
     2161 gcctctgcga ccccaagaca gtgcccaccg acttcgccca gatgctgcag agctacacag
     2221 ctgctggcta ccgcgtggtg gccctcgcca gcaagccgct gcccattgca cccaacatgg
     2281 aagcagctca gcaactgaca agggacgcag tggagtggag gctgagcctc ctggggctgc
     2341 tagttttgca gaatctgcta aagccacaga cgacccccgt catccaggct ctgcggagga
     2401 cctgcatccg cacggtcatg gtgacagggg acaacctgca gacggcggtc accgtggccc
     2461 agggctgcgg catggtgggc ccccaggagc gcctggtcat catccacgcc aacccgcctg
     2521 agcggggcca gcctgcctcc ctcgagcttc tgccagtgga gtcctctgca gccgtgaacg
     2581 gggctcagga tcctgaccag gccgcaagct acaccatgga gccagacccc cgatccagcc
     2641 acctggccct cagcgggtcc acctttggtg tccttatgaa gcacttcccc aagctgctgc
     2701 ccaaggtcct ggtccagggc accgtctttg cccgcatggc tcccgagcag aagacagagc
     2761 tggtgtgtga actacagaag cttcagtact gtgtgggcat gtgtggggat ggcgccaacg
     2821 actgcggggc cctgaaggcg gctgacgtgg gcatctcgct gtcccaggcc gaggcctcag
     2881 tggtctcgcc cttcacctcg agcgtggcca acattgagtg tgtgcccatg gtcatcaggg
     2941 aaggtcgttg ttccctggac acgtcgttca gcgtcttcaa gtacatggcc ctgtacagcc
     3001 tgacccagtt tatctctgtc ctgatcctct acacggtcaa caccaacctg ggcgacgtgc
     3061 agttcctggt catcgacctg gccatcacca ccacggtggc ggtgctcatg agccgcacgg
     3121 ggccggcgct ggctctgggt cgggcgcggc cgccgggggc cctgctcagc gtgcccgcac
     3181 ttagcagcct gctgctacag gtggccctgg tggccagcgt gcagctcggg ggctacttcc
     3241 tgaccgtggc ccagccctgg ttcgtgcctc tgaacaggac ggtacccgcg ccagacaacc
     3301 tgcccaacta tgagaacacg gtggtcttct gtctgtccag cttccagtac ctcatcctgg
     3361 ccgtggccgt gtccaagggg gcgcccttcc gccggccgct ctacaccaat gtgcccttcc
     3421 tggtggccct ggtgctcttg ggctctgtcc tggtgggcct cctcctggcc cccggcctcc
     3481 tgcagggggt actggcgctg aggaccatcg ctgacaccta cttcaagctg ctgctgctgg
     3541 gcctggtcgc cttcaacttc gtgggggcct tcatgctgga gagcgtgctg gaccagtgcc
     3601 tcccaggctg cctgcggtgg ctacggccca aacgggcctc caagaagcgc ttcaagcagc
     3661 tggagcagga gctggccgag cagccctggc caccggccgc cgggcccggg aggtagcgca
     3721 ggcccgccgg ccggcaccct aaacactgga tctccctgct tctgagccac cggccaggac
     3781 ccatctccag agacaccact gccatcgctc ctgcagccct gaggttggcg gttgtcacac
     3841 tcatgtccca cgtctgcccg gcccagcctt ccctgccccc gcctggggag atgctaacta
     3901 tccttgtccc ccacttcgga cgccccttgt agagacagcg gccaccaccc gcactcagag
     3961 ccactgtcag tgtagcaaat aaagtcataa tattttcctg
//
LOCUS       XM_032651811            3977 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase cation transporting 13A2
            (ATP13A2), transcript variant X2, mRNA.
ACCESSION   XM_032651811
VERSION     XM_032651811.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3977
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3977
                     /gene="ATP13A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763729"
     CDS             177..3698
                     /gene="ATP13A2"
                     /codon_start=1
                     /product="cation-transporting ATPase 13A2 isoform X2"
                     /protein_id="XP_032507702.1"
                     /db_xref="GeneID:116763729"
                     /translation="MSADSSPLVGNTPAGYGTLTIETSIDPLSSSVSSVRLSGYCGSP
                     WRVIGYHIVVWMMAGIPLLLFRWKPMWRVRLRLQPCSLARAETLVIEIRDKEDSSWQL
                     YTVQVQTEAISKDSLELPPQTQAEDGRSQAAVGTLPEGTWKDTAQLHRTEEARTLRYY
                     LFRGQRYVWIETQQAFCRVSLLDHGRTCDDLHCSSTGLSLQDQTVRKTIYGPNVISVP
                     VKSYPQLLVDEALNPYYGFQAFSIGLWLADYYYWYALCIFLISMVSICVSIYKTRKQS
                     QTLRDMVQLSVQVCVCRPGGEEEWVDSSELVPGDCLVLPQEGGLMPCDAALVAGECMV
                     NESSLTGESVPVLKTALPEGPVPYFPETHQRHTLFCGTLILQARAFVGPHALAVVTQT
                     GFCTAKGALVSSILHPRPINFKFYKHSVKFVAALSVLALLGTVYSIFILHRNHVPLDE
                     IVIRALDLVTVAVPPALPAAMTVCTLYAQNRLRSQGVFCTHPMRINLGGKLRLVCFDK
                     TGTLTEDSLDVMGVVPLKGQEFLPLVPEPRRLPMGPLLRALATCHTLSRLRDTPVGDP
                     MDLKMVESTGWVLEEGSAADSTFGTQVLAVMKPPLQELHLQGMEEPLVPVSILSHFPF
                     SSALQRMSVVVAWPGAARPEACVKGSPELVAGLCDPKTVPTDFAQMLQSYTAAGYRVV
                     ALASKPLPIAPNMEAAQQLTRDAVEWRLSLLGLLVLQNLLKPQTTPVIQALRRTCIRT
                     VMVTGDNLQTAVTVAQGCGMVGPQERLVIIHANPPERGQPASLELLPVESSAAVNGAQ
                     DPDQAASYTMEPDPRSSHLALSGSTFGVLMKHFPKLLPKVLVQGTVFARMAPEQKTEL
                     VCELQKLQYCVGMCGDGANDCGALKAADVGISLSQAEASVVSPFTSSVANIECVPMVI
                     REGRCSLDTSFSVFKYMALYSLTQFISVLILYTVNTNLGDVQFLVIDLAITTTVAVLM
                     SRTGPALALGRARPPGALLSVPALSSLLLQVALVASVQLGGYFLTVAQPWFVPLNRTV
                     PAPDNLPNYENTVVFCLSSFQYLILAVAVSKGAPFRRPLYTNVPFLVALVLLGSVLVG
                     LLLAPGLLQGVLALRTIADTYFKLLLLGLVAFNFVGAFMLESVLDQCLPGCLRWLRPK
                     RASKKRFKQLEQELAEQPWPPAAGPGR"
     misc_feature    291..3527
                     /gene="ATP13A2"
                     /note="P-type ATPase of unknown pump specificity (type V);
                     Region: P-ATPase-V; TIGR01657"
                     /db_xref="CDD:273738"
ORIGIN      
        1 gcttggcggt gcgcagagcc tgactgcggc accttcgccg ccgctccagc cgctgggtcc
       61 tgcaggtgtc ccgggccgcc cagctccgca gcgccccgcg cccccggcct tccgcctcgg
      121 ccccgaccgc ggggcatcgc gacgcccggg cccggcgatg agcgcgagga gccgccatga
      181 gcgcagacag cagcccgctc gtgggcaaca cgcccgccgg ttatgggacc ctgacgatag
      241 agacatctat agatcccctc agctcctcag tttcatccgt gaggctcagc ggctactgtg
      301 gcagtccatg gagggtcatc ggctatcaca tcgtggtctg gatgatggcg gggatccctc
      361 tgctgctctt ccgatggaag cccatgtggc gggtgcggct gcggctccag ccgtgcagcc
      421 tggcccgcgc cgaaaccctc gttatcgaaa taagagacaa agaggatagt tcgtggcagc
      481 tctatactgt ccaggtgcag actgaggcca tcagcaaaga cagcctggag ctgcccccac
      541 agacccaggc ggaggacggc cggagccagg cagctgtggg gacactacca gaggggacat
      601 ggaaggacac cgcccagctc cacaggaccg aagaggcacg gacgctgcgc tactaccttt
      661 tccggggcca gcgctatgtc tggatcgaga cccagcaggc cttctgccga gtcagcctgc
      721 tggaccacgg ccgcacctgt gacgacctcc actgctccag caccggcctc agcctccagg
      781 accaaaccgt gaggaagacc atctacggcc ccaacgtgat cagtgtacca gtcaagtcct
      841 atccccagct gctggtggac gaggcactga acccctacta tgggttccag gccttcagca
      901 tcgggctgtg gctggctgac tactactact ggtatgccct gtgcatcttc ctgatctcca
      961 tggtctccat ctgcgtgtcg atatacaaga ccagaaagca aagccagact ctgagggaca
     1021 tggtccagct gtctgtacag gtgtgcgtgt gccggcctgg gggagaggag gaatgggtcg
     1081 actccagtga gctcgtgccg ggagactgcc tggtgctgcc ccaggagggt gggctgatgc
     1141 cctgcgatgc tgccctggtg gctggcgagt gcatggtcaa tgagagctct ctgacagggg
     1201 agagcgttcc agtgctgaag accgccctgc cggagggacc ggtgccctac ttcccagaga
     1261 cccaccagcg gcacacgctc ttctgtggga ccctcatctt gcaggcccgg gcctttgtag
     1321 gaccccatgc cctggcagtg gtgacccaga cagggttctg cacggctaaa ggggccctgg
     1381 tgagctccat cctgcatccc cggcccatca acttcaagtt ctataaacac agcgtgaagt
     1441 ttgtggctgc cctctccgtc ctggctctcc tcggcaccgt ctacagcatc ttcatcctcc
     1501 accgcaacca cgtgcctctg gacgagatcg tgatccgggc tctggacctg gtgacggtgg
     1561 cagtgccgcc cgccctgcct gccgccatga ctgtgtgcac gctctacgcc cagaaccggc
     1621 tgcggagcca gggcgtcttc tgcacccacc cgatgcgcat caacctgggg ggcaagctcc
     1681 ggctggtgtg tttcgacaag acaggcacac tcacagagga cagcttggac gtgatgggtg
     1741 tggtgcccct gaaggggcag gagttcctgc cgctggtccc agagccccgc cgccttccca
     1801 tggggcccct gctccgggca ctggccacct gccacaccct cagccggctc cgggacaccc
     1861 cagtgggtga ccccatggac ctcaagatgg tggaatctac tggctgggtc ctggaggagg
     1921 gatcagctgc ggactcgaca tttgggaccc aggtcttagc ggtgatgaaa cccccgcttc
     1981 aggagctcca cctgcagggc atggaggagc ccctggtgcc ggtcagcatc ctcagccact
     2041 tccccttctc atcggctcta cagcgcatga gcgtggtggt ggcatggccg ggggcggctc
     2101 ggcccgaggc ctgcgtcaag ggctcccccg agctggtggc aggcctctgc gaccccaaga
     2161 cagtgcccac cgacttcgcc cagatgctgc agagctacac agctgctggc taccgcgtgg
     2221 tggccctcgc cagcaagccg ctgcccattg cacccaacat ggaagcagct cagcaactga
     2281 caagggacgc agtggagtgg aggctgagcc tcctggggct gctagttttg cagaatctgc
     2341 taaagccaca gacgaccccc gtcatccagg ctctgcggag gacctgcatc cgcacggtca
     2401 tggtgacagg ggacaacctg cagacggcgg tcaccgtggc ccagggctgc ggcatggtgg
     2461 gcccccagga gcgcctggtc atcatccacg ccaacccgcc tgagcggggc cagcctgcct
     2521 ccctcgagct tctgccagtg gagtcctctg cagccgtgaa cggggctcag gatcctgacc
     2581 aggccgcaag ctacaccatg gagccagacc cccgatccag ccacctggcc ctcagcgggt
     2641 ccacctttgg tgtccttatg aagcacttcc ccaagctgct gcccaaggtc ctggtccagg
     2701 gcaccgtctt tgcccgcatg gctcccgagc agaagacaga gctggtgtgt gaactacaga
     2761 agcttcagta ctgtgtgggc atgtgtgggg atggcgccaa cgactgcggg gccctgaagg
     2821 cggctgacgt gggcatctcg ctgtcccagg ccgaggcctc agtggtctcg cccttcacct
     2881 cgagcgtggc caacattgag tgtgtgccca tggtcatcag ggaaggtcgt tgttccctgg
     2941 acacgtcgtt cagcgtcttc aagtacatgg ccctgtacag cctgacccag tttatctctg
     3001 tcctgatcct ctacacggtc aacaccaacc tgggcgacgt gcagttcctg gtcatcgacc
     3061 tggccatcac caccacggtg gcggtgctca tgagccgcac ggggccggcg ctggctctgg
     3121 gtcgggcgcg gccgccgggg gccctgctca gcgtgcccgc acttagcagc ctgctgctac
     3181 aggtggccct ggtggccagc gtgcagctcg ggggctactt cctgaccgtg gcccagccct
     3241 ggttcgtgcc tctgaacagg acggtacccg cgccagacaa cctgcccaac tatgagaaca
     3301 cggtggtctt ctgtctgtcc agcttccagt acctcatcct ggccgtggcc gtgtccaagg
     3361 gggcgccctt ccgccggccg ctctacacca atgtgccctt cctggtggcc ctggtgctct
     3421 tgggctctgt cctggtgggc ctcctcctgg cccccggcct cctgcagggg gtactggcgc
     3481 tgaggaccat cgctgacacc tacttcaagc tgctgctgct gggcctggtc gccttcaact
     3541 tcgtgggggc cttcatgctg gagagcgtgc tggaccagtg cctcccaggc tgcctgcggt
     3601 ggctacggcc caaacgggcc tccaagaagc gcttcaagca gctggagcag gagctggccg
     3661 agcagccctg gccaccggcc gccgggcccg ggaggtagcg caggcccgcc ggccggcacc
     3721 ctaaacactg gatctccctg cttctgagcc accggccagg acccatctcc agagacacca
     3781 ctgccatcgc tcctgcagcc ctgaggttgg cggttgtcac actcatgtcc cacgtctgcc
     3841 cggcccagcc ttccctgccc ccgcctgggg agatgctaac tatccttgtc ccccacttcg
     3901 gacgcccctt gtagagacag cggccaccac ccgcactcag agccactgtc agtgtagcaa
     3961 ataaagtcat aatattt
//
LOCUS       XM_032651818            3953 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase cation transporting 13A2
            (ATP13A2), transcript variant X3, mRNA.
ACCESSION   XM_032651818
VERSION     XM_032651818.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3953
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3953
                     /gene="ATP13A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763729"
     CDS             177..3674
                     /gene="ATP13A2"
                     /codon_start=1
                     /product="cation-transporting ATPase 13A2 isoform X3"
                     /protein_id="XP_032507709.1"
                     /db_xref="GeneID:116763729"
                     /translation="MSADSSPLVGNTPAGYGTLTIETSIDPLSSSVSSVRLSGYCGSP
                     WRVIGYHIVVWMMAGIPLLLFRWKPMWRVRLRLQPCSLARAETLVIEIRDKEDSSWQL
                     YTVQVQTEAISKDSLELPPQTQAEDGRSQAAVGTLPEGTWKDTAQLHRTEEAQRTLRY
                     YLFRGQRYVWIETQQAFCRVSLLDHGRTCDDLHCSSTGLSLQDQTVRKTIYGPNVISV
                     PVKSYPQLLVDEAFSIGLWLADYYYWYALCIFLISMVSICVSIYKTRKQSQTLRDMVQ
                     LSVQVCVCRPGGEEEWVDSSELVPGDCLVLPQEGGLMPCDAALVAGECMVNESSLTGE
                     SVPVLKTALPEGPVPYFPETHQRHTLFCGTLILQARAFVGPHALAVVTQTGFCTAKGA
                     LVSSILHPRPINFKFYKHSVKFVAALSVLALLGTVYSIFILHRNHVPLDEIVIRALDL
                     VTVAVPPALPAAMTVCTLYAQNRLRSQGVFCTHPMRINLGGKLRLVCFDKTGTLTEDS
                     LDVMGVVPLKGQEFLPLVPEPRRLPMGPLLRALATCHTLSRLRDTPVGDPMDLKMVES
                     TGWVLEEGSAADSTFGTQVLAVMKPPLQELHLQGMEEPLVPVSILSHFPFSSALQRMS
                     VVVAWPGAARPEACVKGSPELVAGLCDPKTVPTDFAQMLQSYTAAGYRVVALASKPLP
                     IAPNMEAAQQLTRDAVEWRLSLLGLLVLQNLLKPQTTPVIQALRRTCIRTVMVTGDNL
                     QTAVTVAQGCGMVGPQERLVIIHANPPERGQPASLELLPVESSAAVNGAQDPDQAASY
                     TMEPDPRSSHLALSGSTFGVLMKHFPKLLPKVLVQGTVFARMAPEQKTELVCELQKLQ
                     YCVGMCGDGANDCGALKAADVGISLSQAEASVVSPFTSSVANIECVPMVIREGRCSLD
                     TSFSVFKYMALYSLTQFISVLILYTVNTNLGDVQFLVIDLAITTTVAVLMSRTGPALA
                     LGRARPPGALLSVPALSSLLLQVALVASVQLGGYFLTVAQPWFVPLNRTVPAPDNLPN
                     YENTVVFCLSSFQYLILAVAVSKGAPFRRPLYTNVPFLVALVLLGSVLVGLLLAPGLL
                     QGVLALRTIADTYFKLLLLGLVAFNFVGAFMLESVLDQCLPGCLRWLRPKRASKKRFK
                     QLEQELAEQPWPPAAGPGR"
     misc_feature    291..3503
                     /gene="ATP13A2"
                     /note="P-type ATPase of unknown pump specificity (type V);
                     Region: P-ATPase-V; TIGR01657"
                     /db_xref="CDD:273738"
ORIGIN      
        1 gcttggcggt gcgcagagcc tgactgcggc accttcgccg ccgctccagc cgctgggtcc
       61 tgcaggtgtc ccgggccgcc cagctccgca gcgccccgcg cccccggcct tccgcctcgg
      121 ccccgaccgc ggggcatcgc gacgcccggg cccggcgatg agcgcgagga gccgccatga
      181 gcgcagacag cagcccgctc gtgggcaaca cgcccgccgg ttatgggacc ctgacgatag
      241 agacatctat agatcccctc agctcctcag tttcatccgt gaggctcagc ggctactgtg
      301 gcagtccatg gagggtcatc ggctatcaca tcgtggtctg gatgatggcg gggatccctc
      361 tgctgctctt ccgatggaag cccatgtggc gggtgcggct gcggctccag ccgtgcagcc
      421 tggcccgcgc cgaaaccctc gttatcgaaa taagagacaa agaggatagt tcgtggcagc
      481 tctatactgt ccaggtgcag actgaggcca tcagcaaaga cagcctggag ctgcccccac
      541 agacccaggc ggaggacggc cggagccagg cagctgtggg gacactacca gaggggacat
      601 ggaaggacac cgcccagctc cacaggaccg aagaggcaca gcggacgctg cgctactacc
      661 ttttccgggg ccagcgctat gtctggatcg agacccagca ggccttctgc cgagtcagcc
      721 tgctggacca cggccgcacc tgtgacgacc tccactgctc cagcaccggc ctcagcctcc
      781 aggaccaaac cgtgaggaag accatctacg gccccaacgt gatcagtgta ccagtcaagt
      841 cctatcccca gctgctggtg gacgaggcct tcagcatcgg gctgtggctg gctgactact
      901 actactggta tgccctgtgc atcttcctga tctccatggt ctccatctgc gtgtcgatat
      961 acaagaccag aaagcaaagc cagactctga gggacatggt ccagctgtct gtacaggtgt
     1021 gcgtgtgccg gcctggggga gaggaggaat gggtcgactc cagtgagctc gtgccgggag
     1081 actgcctggt gctgccccag gagggtgggc tgatgccctg cgatgctgcc ctggtggctg
     1141 gcgagtgcat ggtcaatgag agctctctga caggggagag cgttccagtg ctgaagaccg
     1201 ccctgccgga gggaccggtg ccctacttcc cagagaccca ccagcggcac acgctcttct
     1261 gtgggaccct catcttgcag gcccgggcct ttgtaggacc ccatgccctg gcagtggtga
     1321 cccagacagg gttctgcacg gctaaagggg ccctggtgag ctccatcctg catccccggc
     1381 ccatcaactt caagttctat aaacacagcg tgaagtttgt ggctgccctc tccgtcctgg
     1441 ctctcctcgg caccgtctac agcatcttca tcctccaccg caaccacgtg cctctggacg
     1501 agatcgtgat ccgggctctg gacctggtga cggtggcagt gccgcccgcc ctgcctgccg
     1561 ccatgactgt gtgcacgctc tacgcccaga accggctgcg gagccagggc gtcttctgca
     1621 cccacccgat gcgcatcaac ctggggggca agctccggct ggtgtgtttc gacaagacag
     1681 gcacactcac agaggacagc ttggacgtga tgggtgtggt gcccctgaag gggcaggagt
     1741 tcctgccgct ggtcccagag ccccgccgcc ttcccatggg gcccctgctc cgggcactgg
     1801 ccacctgcca caccctcagc cggctccggg acaccccagt gggtgacccc atggacctca
     1861 agatggtgga atctactggc tgggtcctgg aggagggatc agctgcggac tcgacatttg
     1921 ggacccaggt cttagcggtg atgaaacccc cgcttcagga gctccacctg cagggcatgg
     1981 aggagcccct ggtgccggtc agcatcctca gccacttccc cttctcatcg gctctacagc
     2041 gcatgagcgt ggtggtggca tggccggggg cggctcggcc cgaggcctgc gtcaagggct
     2101 cccccgagct ggtggcaggc ctctgcgacc ccaagacagt gcccaccgac ttcgcccaga
     2161 tgctgcagag ctacacagct gctggctacc gcgtggtggc cctcgccagc aagccgctgc
     2221 ccattgcacc caacatggaa gcagctcagc aactgacaag ggacgcagtg gagtggaggc
     2281 tgagcctcct ggggctgcta gttttgcaga atctgctaaa gccacagacg acccccgtca
     2341 tccaggctct gcggaggacc tgcatccgca cggtcatggt gacaggggac aacctgcaga
     2401 cggcggtcac cgtggcccag ggctgcggca tggtgggccc ccaggagcgc ctggtcatca
     2461 tccacgccaa cccgcctgag cggggccagc ctgcctccct cgagcttctg ccagtggagt
     2521 cctctgcagc cgtgaacggg gctcaggatc ctgaccaggc cgcaagctac accatggagc
     2581 cagacccccg atccagccac ctggccctca gcgggtccac ctttggtgtc cttatgaagc
     2641 acttccccaa gctgctgccc aaggtcctgg tccagggcac cgtctttgcc cgcatggctc
     2701 ccgagcagaa gacagagctg gtgtgtgaac tacagaagct tcagtactgt gtgggcatgt
     2761 gtggggatgg cgccaacgac tgcggggccc tgaaggcggc tgacgtgggc atctcgctgt
     2821 cccaggccga ggcctcagtg gtctcgccct tcacctcgag cgtggccaac attgagtgtg
     2881 tgcccatggt catcagggaa ggtcgttgtt ccctggacac gtcgttcagc gtcttcaagt
     2941 acatggccct gtacagcctg acccagttta tctctgtcct gatcctctac acggtcaaca
     3001 ccaacctggg cgacgtgcag ttcctggtca tcgacctggc catcaccacc acggtggcgg
     3061 tgctcatgag ccgcacgggg ccggcgctgg ctctgggtcg ggcgcggccg ccgggggccc
     3121 tgctcagcgt gcccgcactt agcagcctgc tgctacaggt ggccctggtg gccagcgtgc
     3181 agctcggggg ctacttcctg accgtggccc agccctggtt cgtgcctctg aacaggacgg
     3241 tacccgcgcc agacaacctg cccaactatg agaacacggt ggtcttctgt ctgtccagct
     3301 tccagtacct catcctggcc gtggccgtgt ccaagggggc gcccttccgc cggccgctct
     3361 acaccaatgt gcccttcctg gtggccctgg tgctcttggg ctctgtcctg gtgggcctcc
     3421 tcctggcccc cggcctcctg cagggggtac tggcgctgag gaccatcgct gacacctact
     3481 tcaagctgct gctgctgggc ctggtcgcct tcaacttcgt gggggccttc atgctggaga
     3541 gcgtgctgga ccagtgcctc ccaggctgcc tgcggtggct acggcccaaa cgggcctcca
     3601 agaagcgctt caagcagctg gagcaggagc tggccgagca gccctggcca ccggccgccg
     3661 ggcccgggag gtagcgcagg cccgccggcc ggcaccctaa acactggatc tccctgcttc
     3721 tgagccaccg gccaggaccc atctccagag acaccactgc catcgctcct gcagccctga
     3781 ggttggcggt tgtcacactc atgtcccacg tctgcccggc ccagccttcc ctgcccccgc
     3841 ctggggagat gctaactatc cttgtccccc acttcggacg ccccttgtag agacagcggc
     3901 caccacccgc actcagagcc actgtcagtg tagcaaataa agtcataata ttt
//
LOCUS       XM_032651830            3422 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAP7 domain containing 1 (MAP7D1),
            transcript variant X1, mRNA.
ACCESSION   XM_032651830
VERSION     XM_032651830.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3422
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3422
                     /gene="MAP7D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 1
                     Protein, and 97% coverage of the annotated genomic feature
                     by RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116763746"
     CDS             318..2840
                     /gene="MAP7D1"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 1 isoform X1"
                     /protein_id="XP_032507721.1"
                     /db_xref="GeneID:116763746"
                     /translation="MESGSRSEPGAGAAPDVAARTPPEPRPSPEGDPSPPPPPPPMSA
                     LVPDTPPDTPPAMKNTTGPKQLPLEPESPPELVGPRPAPKQEESPFSEVKIRGPTPPA
                     TGPRDARPPRRSSQPSPTAGSAADSPPTKQDAKKAGERHKLAKERREERAKYLAAKKA
                     VWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQ
                     RSVKKTWAEIRQQRWSWAGALHHSSPGRKPSGSRCSVSAVNLPKHVDSIINKRLSKSS
                     ATLWNSPSRNRSLQLSPWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGHGPGR
                     APSRGGTGASLVSRPRPDRTHPSAAVPVCPRSASASPLTPCSIPRSGHRCAPAGERRK
                     ASAGGSPAPARLRPEASLVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPRARL
                     STVNTEFSPKSKARPSSPSTSWHRPASPCLSPGPGHALPPKPPSPRGTTASPKGRVRR
                     KDEAKETLSVAGPEDKNQSKGKALDEKEPAAPASPAPSPVPSPTPAQPQEEQPTEIPA
                     DTPVLTSPPAPAPLVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERRLQAER
                     DKRMREEQLAREFETRAEREAEARRREEQEAREKAQAEQEELERLQKQKEEAEARSRE
                     EAERQRLEREKHFQREEQERQERKKRLEEIMKRTRKSEAAETKQKQDRKEAKANNSSP
                     GIDPVKAMEARSSGLQKEAVQKEELAPQEPQWSLPNKESPGSLVNGLQPLPAHQENGF
                     SPKGPSGDKSLGRTPEALLPFAEAEAFLKKAVVQAPQVTEVL"
     misc_feature    <690..>1007
                     /gene="MAP7D1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1266..2084
                     /gene="MAP7D1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2070..2486
                     /gene="MAP7D1"
                     /note="MAP7 (E-MAP-115) family; Region: MAP7; pfam05672"
                     /db_xref="CDD:461709"
ORIGIN      
        1 ggtacgcgcc agcggcgagg ccaggcccag cccgggcggt acaatagggt tgggtcgcgg
       61 cggggactgg gccggcgctg ggcgaggagc aggatcgcgg ccggagccga cagacactgg
      121 gcggccggcg actccgaacc cgcaggccac cagccgagcc agcctcgacc taccccggag
      181 ctcccccccg cccttcgaat cgttgcccgc cgggccgggc cgggcgtgat gcaccgcggg
      241 acccctatcc tggccgctgg ccgccgccgc cgtcgccgct gctgaaatcc cgaagactcc
      301 ccagtgacgc cgcagccatg gagagcggct cacgttcgga gcccggtgcc ggcgcagccc
      361 cagatgtggc agccaggacc cctccagagc caagaccttc tccagaaggt gacccctccc
      421 cgccaccacc accaccaccg atgtcagccc tggtgcccga cactccccca gacacccctc
      481 ccgccatgaa gaacaccact ggccctaagc agctcccact ggaaccagaa agccccccag
      541 agctggtagg gcctaggcca gccccgaagc aggaagagtc ccctttctca gaagtgaaga
      601 tcaggggacc caccccacca gccacaggcc cacgggatgc caggcctcct cgaagaagca
      661 gccagccatc cccaacagca gggtcagctg ccgacagccc tcccacgaag caagatgcaa
      721 agaaggcagg agagagacac aagctggcga aggagcggcg ggaagagcgg gccaagtacc
      781 tggcggccaa gaaggcggtg tggctggaga aggaggagaa ggccaaggtg ctgcgggaga
      841 agcagctcca ggagcgccgg cggcggctgg aggagcagcg gctcaaagcc gagcaacgcc
      901 gagcagccct ggaggagcgg cagcggcaga aactggagaa aaacaaggag cgatatgaag
      961 cagccatcca gcggtcagtg aagaagacgt gggccgaaat ccggcagcag cgctggtcct
     1021 gggcaggggc cctgcaccac agctccccag gacggaagcc cagtgggagc aggtgctccg
     1081 tgtcggcagt aaacctgccc aaacacgtgg actctataat caacaagcgg ctctcaaagt
     1141 cctctgccac gctctggaac tcccccagta gaaatcgcag cctgcagctg agcccatggg
     1201 agagcagcat tgtggaccgt ctgatgacgc ccaccctctc cttcctggca cggagtcgca
     1261 gtgcagtcac cctgccccga aacggccggg accagggtag gggccacggt cctgggagag
     1321 ccccctcgag aggcgggaca ggggccagcc tcgtgagtag gccacgcccc gaccgcactc
     1381 atccctccgc agccgtgccc gtgtgccctc gctcggcctc cgccagcccc ctgacgccgt
     1441 gcagcatccc ccgaagcggg caccgctgcg cccccgccgg ggagcgccgc aaggccagcg
     1501 ccgggggcag ccctgccccg gcacgtctcc ggcccgaggc ttcgctggtg cagaaaaagg
     1561 agaagaagga caaggagcgg gaaaacgaga aggagaagag tgccctggcc cgggagcgca
     1621 gcctcaagaa gcgacagtcg ctgccggcct ctccgcgcgc gcgcctctcc actgtcaaca
     1681 cggagttcag tcccaaatcc aaggcccggc catcctctcc ctccacatcc tggcacaggc
     1741 ctgcctctcc ctgcctcagc ccagggccag gtcatgctct gcccccaaaa ccaccgtccc
     1801 cccgaggtac cactgcatca cccaaggggc gggttcggag gaaggatgaa gcaaaggaga
     1861 ccctcagtgt ggcggggcct gaggacaaga accagagcaa gggcaaggcc cttgacgaga
     1921 aggagcctgc agccccagcc tcacccgcac cctcgcctgt gccctcaccc accccagccc
     1981 agccccagga ggagcagccc acagagatcc ctgcagatac accagtcttg acctcacccc
     2041 cagcccctgc tcccctggtg acccctagca aaccgatggc tggcacgacg gaccgagaag
     2101 aggccactag gctcctggct gagaagcggc gccaggcccg ggagcagcgg gagcgcgagg
     2161 aacaggagcg gaggctgcag gcagaaaggg acaagcgaat gcgagaggag cagctggctc
     2221 gggagttcga gactcgggca gagcgggagg cggaggccag gaggcgggag gagcaggagg
     2281 cccgggagaa ggctcaggcg gagcaggagg agctggagcg gctgcagaag cagaaagagg
     2341 aggccgaagc tcgatcccga gaagaagcgg agcggcagcg tctggagcgg gaaaagcact
     2401 tccagcgcga ggagcaggag cggcaggagc gcaaaaagcg cctggaggaa atcatgaaga
     2461 ggactcggaa gtcagaagct gctgaaacca agcagaagca ggacagaaag gaggcaaagg
     2521 ccaacaattc cagcccaggg atagaccctg tgaaagccat ggaggctcgg tcttccgggc
     2581 tgcagaagga ggctgtgcag aaagaggagc tggcccccca ggagcctcag tggagcctgc
     2641 caaacaagga gtcgccaggg tccctggtga atggcctgca gcctctccca gcgcaccagg
     2701 agaatggctt ctcccctaag ggaccctctg gggacaagag tctgggacga actccagagg
     2761 cactcctgcc cttcgcagag gcagaagcct tcctcaagaa agctgtggtg caggccccgc
     2821 aggtcacaga agtcctttaa ggggttgcct tggatccagg cacaactatg agggctcctt
     2881 tgcatcatct accaggatgt ctgcaagaga aagagacaga acaaagctgg aagtggcctg
     2941 ggcccctgag ggttgggtcc tctctgttat ttttaacctg caccttatag actgatgtct
     3001 ctttggctgg agcccctcag tgcattcgtg tgctcacatg cgcggacacc ccccccccca
     3061 cacacacaca cacatacact cacagcctct ctggcctcct cccatgggga agcgctacct
     3121 gtagtatttg ccttggtttg gtggggtaca gtggatgtga atactgtaaa tagcttgtgc
     3181 tcagactcct ctgcgtggag gggtgggtgc aagaggcaga ccctcccaag actctctggg
     3241 gagatcttcc tccctctatt taactgtgac tgagggggaa cccaggtctg gggatggggg
     3301 gcaccttggg ccacaggata ccggttgctt taggagtacc catgccccct gccctcgcct
     3361 ggaatcagtg ttattgcatc tgatcaaact tctccagaaa taaaatgaga atcattctgc
     3421 ca
//
LOCUS       XM_032651840            3423 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAP7 domain containing 1 (MAP7D1),
            transcript variant X2, mRNA.
ACCESSION   XM_032651840
VERSION     XM_032651840.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3423
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3423
                     /gene="MAP7D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 17 long SRA reads, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763746"
     CDS             322..2841
                     /gene="MAP7D1"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 1 isoform X2"
                     /protein_id="XP_032507731.1"
                     /db_xref="GeneID:116763746"
                     /translation="MESGSRSEPGAGAAPDVAARTPPEPRPSPEGDPSPPPPPPPMSA
                     LVPDTPPDTPPAMKNTTGPKQLPLEPESPPELVGPRPAPKQEESPFSEVKIRGPTPPA
                     TGPRDARPPRRSSQPSPTAGSAADSPPTKQDAKKAGERHKLAKERREERAKYLAAKKA
                     VWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQ
                     RSVKKTWAEIRQQRWSWAGALHHSSPGRKPSGSRCSVSAVNLPKHVDSIINKRLSKSS
                     ATLWNSPSRNRSLQLSPWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGHGPGR
                     APSRGGTGASLVSRPRPDRTHPSAAVPVCPRSASASPLTPCSIPRSGHRCAPAGERRK
                     ASAGGSPAPARLRPEASLVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPRARL
                     STVNTEFSPKSKARPSSPSTSWHRPASPCLSPGPGHALPPKPPSPRGTTASPKGRVRR
                     KDEAKETLSVAGPEDKNQSKGKALDEKEPAAPASPAPSPVPSPTPAQPQEEQPTEIPA
                     DTPVLTSPPAPAPLVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERRLQAER
                     DKRMREEQLAREFETRAEREAEARRREEQEAREKAQAEQEELERLQKQKEEAEARSRE
                     EAERQRLEREKHFQREEQERQERKKRLEEIMKRTRKSEAAETKKQDRKEAKANNSSPG
                     IDPVKAMEARSSGLQKEAVQKEELAPQEPQWSLPNKESPGSLVNGLQPLPAHQENGFS
                     PKGPSGDKSLGRTPEALLPFAEAEAFLKKAVVQAPQVTEVL"
     misc_feature    <694..>1011
                     /gene="MAP7D1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1270..2088
                     /gene="MAP7D1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2074..2490
                     /gene="MAP7D1"
                     /note="MAP7 (E-MAP-115) family; Region: MAP7; pfam05672"
                     /db_xref="CDD:461709"
ORIGIN      
        1 acttggtacg cgccagcggc gaggccaggc ccagcccggg cggtacaata gggttgggtc
       61 gcggcgggga ctgggccggc gctgggcgag gagcaggatc gcggccggag ccgacagaca
      121 ctgggcggcc ggcgactccg aacccgcagg ccaccagccg agccagcctc gacctacccc
      181 ggagctcccc cccgcccttc gaatcgttgc ccgccgggcc gggccgggcg tgatgcaccg
      241 cgggacccct atcctggccg ctggccgccg ccgccgtcgc cgctgctgaa atcccgaaga
      301 ctccccagtg acgccgcagc catggagagc ggctcacgtt cggagcccgg tgccggcgca
      361 gccccagatg tggcagccag gacccctcca gagccaagac cttctccaga aggtgacccc
      421 tccccgccac caccaccacc accgatgtca gccctggtgc ccgacactcc cccagacacc
      481 cctcccgcca tgaagaacac cactggccct aagcagctcc cactggaacc agaaagcccc
      541 ccagagctgg tagggcctag gccagccccg aagcaggaag agtccccttt ctcagaagtg
      601 aagatcaggg gacccacccc accagccaca ggcccacggg atgccaggcc tcctcgaaga
      661 agcagccagc catccccaac agcagggtca gctgccgaca gccctcccac gaagcaagat
      721 gcaaagaagg caggagagag acacaagctg gcgaaggagc ggcgggaaga gcgggccaag
      781 tacctggcgg ccaagaaggc ggtgtggctg gagaaggagg agaaggccaa ggtgctgcgg
      841 gagaagcagc tccaggagcg ccggcggcgg ctggaggagc agcggctcaa agccgagcaa
      901 cgccgagcag ccctggagga gcggcagcgg cagaaactgg agaaaaacaa ggagcgatat
      961 gaagcagcca tccagcggtc agtgaagaag acgtgggccg aaatccggca gcagcgctgg
     1021 tcctgggcag gggccctgca ccacagctcc ccaggacgga agcccagtgg gagcaggtgc
     1081 tccgtgtcgg cagtaaacct gcccaaacac gtggactcta taatcaacaa gcggctctca
     1141 aagtcctctg ccacgctctg gaactccccc agtagaaatc gcagcctgca gctgagccca
     1201 tgggagagca gcattgtgga ccgtctgatg acgcccaccc tctccttcct ggcacggagt
     1261 cgcagtgcag tcaccctgcc ccgaaacggc cgggaccagg gtaggggcca cggtcctggg
     1321 agagccccct cgagaggcgg gacaggggcc agcctcgtga gtaggccacg ccccgaccgc
     1381 actcatccct ccgcagccgt gcccgtgtgc cctcgctcgg cctccgccag ccccctgacg
     1441 ccgtgcagca tcccccgaag cgggcaccgc tgcgcccccg ccggggagcg ccgcaaggcc
     1501 agcgccgggg gcagccctgc cccggcacgt ctccggcccg aggcttcgct ggtgcagaaa
     1561 aaggagaaga aggacaagga gcgggaaaac gagaaggaga agagtgccct ggcccgggag
     1621 cgcagcctca agaagcgaca gtcgctgccg gcctctccgc gcgcgcgcct ctccactgtc
     1681 aacacggagt tcagtcccaa atccaaggcc cggccatcct ctccctccac atcctggcac
     1741 aggcctgcct ctccctgcct cagcccaggg ccaggtcatg ctctgccccc aaaaccaccg
     1801 tccccccgag gtaccactgc atcacccaag gggcgggttc ggaggaagga tgaagcaaag
     1861 gagaccctca gtgtggcggg gcctgaggac aagaaccaga gcaagggcaa ggcccttgac
     1921 gagaaggagc ctgcagcccc agcctcaccc gcaccctcgc ctgtgccctc acccacccca
     1981 gcccagcccc aggaggagca gcccacagag atccctgcag atacaccagt cttgacctca
     2041 cccccagccc ctgctcccct ggtgacccct agcaaaccga tggctggcac gacggaccga
     2101 gaagaggcca ctaggctcct ggctgagaag cggcgccagg cccgggagca gcgggagcgc
     2161 gaggaacagg agcggaggct gcaggcagaa agggacaagc gaatgcgaga ggagcagctg
     2221 gctcgggagt tcgagactcg ggcagagcgg gaggcggagg ccaggaggcg ggaggagcag
     2281 gaggcccggg agaaggctca ggcggagcag gaggagctgg agcggctgca gaagcagaaa
     2341 gaggaggccg aagctcgatc ccgagaagaa gcggagcggc agcgtctgga gcgggaaaag
     2401 cacttccagc gcgaggagca ggagcggcag gagcgcaaaa agcgcctgga ggaaatcatg
     2461 aagaggactc ggaagtcaga agctgctgaa accaagaagc aggacagaaa ggaggcaaag
     2521 gccaacaatt ccagcccagg gatagaccct gtgaaagcca tggaggctcg gtcttccggg
     2581 ctgcagaagg aggctgtgca gaaagaggag ctggcccccc aggagcctca gtggagcctg
     2641 ccaaacaagg agtcgccagg gtccctggtg aatggcctgc agcctctccc agcgcaccag
     2701 gagaatggct tctcccctaa gggaccctct ggggacaaga gtctgggacg aactccagag
     2761 gcactcctgc ccttcgcaga ggcagaagcc ttcctcaaga aagctgtggt gcaggccccg
     2821 caggtcacag aagtccttta aggggttgcc ttggatccag gcacaactat gagggctcct
     2881 ttgcatcatc taccaggatg tctgcaagag aaagagacag aacaaagctg gaagtggcct
     2941 gggcccctga gggttgggtc ctctctgtta tttttaacct gcaccttata gactgatgtc
     3001 tctttggctg gagcccctca gtgcattcgt gtgctcacat gcgcggacac cccccccccc
     3061 acacacacac acacatacac tcacagcctc tctggcctcc tcccatgggg aagcgctacc
     3121 tgtagtattt gccttggttt ggtggggtac agtggatgtg aatactgtaa atagcttgtg
     3181 ctcagactcc tctgcgtgga ggggtgggtg caagaggcag accctcccaa gactctctgg
     3241 ggagatcttc ctccctctat ttaactgtga ctgaggggga acccaggtct ggggatgggg
     3301 ggcaccttgg gccacaggat accggttgct ttaggagtac ccatgccccc tgccctcgcc
     3361 tggaatcagt gttattgcat ctgatcaaac ttctccagaa ataaaatgag aatcattctg
     3421 cca
//
LOCUS       XM_032651851            3355 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAP7 domain containing 1 (MAP7D1),
            transcript variant X3, mRNA.
ACCESSION   XM_032651851
VERSION     XM_032651851.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3355
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3355
                     /gene="MAP7D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763746"
     CDS             314..2773
                     /gene="MAP7D1"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 1 isoform X3"
                     /protein_id="XP_032507742.1"
                     /db_xref="GeneID:116763746"
                     /translation="MESGSRSEPGAGAAPDVAARTPPEPRPSPEGDPSPPPPPPPMSA
                     LVPDTPPDTPPAMKNTTGPKQLPLEPESPPELVGPRPAPKQEESPFSEVKIRGPTPPA
                     TGPRDARPPRRSSQPSPTAGSAADSPPTKQDAKKAGERHKLAKERREERAKYLAAKKA
                     VWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQ
                     RSVKKTWAEIRQQRWSWAGALHHSSPGRKPSGSRCSVSAVNLPKHVDSIINKRLSKSS
                     ATLWNSPSRNRSLQLSPWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQAVPVCPRS
                     ASASPLTPCSIPRSGHRCAPAGERRKASAGGSPAPARLRPEASLVQKKEKKDKERENE
                     KEKSALARERSLKKRQSLPASPRARLSTVNTEFSPKSKARPSSPSTSWHRPASPCLSP
                     GPGHALPPKPPSPRGTTASPKGRVRRKDEAKETLSVAGPEDKNQSKGKALDEKEPAAP
                     ASPAPSPVPSPTPAQPQEEQPTEIPADTPVLTSPPAPAPLVTPSKPMAGTTDREEATR
                     LLAEKRRQAREQREREEQERRLQAERDKRMREEQLAREFETRAEREAEARRREEQEAR
                     EKAQAEQEELERLQKQKEEAEARSREEAERQRLEREKHFQREEQERQERKKRLEEIMK
                     RTRKSEAAETKVRMPPRAVLGVEKQDRKEAKANNSSPGIDPVKAMEARSSGLQKEAVQ
                     KEELAPQEPQWSLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPF
                     AEAEAFLKKAVVQAPQVTEVL"
     misc_feature    <686..>1003
                     /gene="MAP7D1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1313..1984
                     /gene="MAP7D1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1970..2386
                     /gene="MAP7D1"
                     /note="MAP7 (E-MAP-115) family; Region: MAP7; pfam05672"
                     /db_xref="CDD:461709"
ORIGIN      
        1 cgcgccagcg gcgaggccag gcccagcccg ggcggtacaa tagggttggg tcgcggcggg
       61 gactgggccg gcgctgggcg aggagcagga tcgcggccgg agccgacaga cactgggcgg
      121 ccggcgactc cgaacccgca ggccaccagc cgagccagcc tcgacctacc ccggagctcc
      181 cccccgccct tcgaatcgtt gcccgccggg ccgggccggg cgtgatgcac cgcgggaccc
      241 ctatcctggc cgctggccgc cgccgccgtc gccgctgctg aaatcccgaa gactccccag
      301 tgacgccgca gccatggaga gcggctcacg ttcggagccc ggtgccggcg cagccccaga
      361 tgtggcagcc aggacccctc cagagccaag accttctcca gaaggtgacc cctccccgcc
      421 accaccacca ccaccgatgt cagccctggt gcccgacact cccccagaca cccctcccgc
      481 catgaagaac accactggcc ctaagcagct cccactggaa ccagaaagcc ccccagagct
      541 ggtagggcct aggccagccc cgaagcagga agagtcccct ttctcagaag tgaagatcag
      601 gggacccacc ccaccagcca caggcccacg ggatgccagg cctcctcgaa gaagcagcca
      661 gccatcccca acagcagggt cagctgccga cagccctccc acgaagcaag atgcaaagaa
      721 ggcaggagag agacacaagc tggcgaagga gcggcgggaa gagcgggcca agtacctggc
      781 ggccaagaag gcggtgtggc tggagaagga ggagaaggcc aaggtgctgc gggagaagca
      841 gctccaggag cgccggcggc ggctggagga gcagcggctc aaagccgagc aacgccgagc
      901 agccctggag gagcggcagc ggcagaaact ggagaaaaac aaggagcgat atgaagcagc
      961 catccagcgg tcagtgaaga agacgtgggc cgaaatccgg cagcagcgct ggtcctgggc
     1021 aggggccctg caccacagct ccccaggacg gaagcccagt gggagcaggt gctccgtgtc
     1081 ggcagtaaac ctgcccaaac acgtggactc tataatcaac aagcggctct caaagtcctc
     1141 tgccacgctc tggaactccc ccagtagaaa tcgcagcctg cagctgagcc catgggagag
     1201 cagcattgtg gaccgtctga tgacgcccac cctctccttc ctggcacgga gtcgcagtgc
     1261 agtcaccctg ccccgaaacg gccgggacca ggccgtgccc gtgtgccctc gctcggcctc
     1321 cgccagcccc ctgacgccgt gcagcatccc ccgaagcggg caccgctgcg cccccgccgg
     1381 ggagcgccgc aaggccagcg ccgggggcag ccctgccccg gcacgtctcc ggcccgaggc
     1441 ttcgctggtg cagaaaaagg agaagaagga caaggagcgg gaaaacgaga aggagaagag
     1501 tgccctggcc cgggagcgca gcctcaagaa gcgacagtcg ctgccggcct ctccgcgcgc
     1561 gcgcctctcc actgtcaaca cggagttcag tcccaaatcc aaggcccggc catcctctcc
     1621 ctccacatcc tggcacaggc ctgcctctcc ctgcctcagc ccagggccag gtcatgctct
     1681 gcccccaaaa ccaccgtccc cccgaggtac cactgcatca cccaaggggc gggttcggag
     1741 gaaggatgaa gcaaaggaga ccctcagtgt ggcggggcct gaggacaaga accagagcaa
     1801 gggcaaggcc cttgacgaga aggagcctgc agccccagcc tcacccgcac cctcgcctgt
     1861 gccctcaccc accccagccc agccccagga ggagcagccc acagagatcc ctgcagatac
     1921 accagtcttg acctcacccc cagcccctgc tcccctggtg acccctagca aaccgatggc
     1981 tggcacgacg gaccgagaag aggccactag gctcctggct gagaagcggc gccaggcccg
     2041 ggagcagcgg gagcgcgagg aacaggagcg gaggctgcag gcagaaaggg acaagcgaat
     2101 gcgagaggag cagctggctc gggagttcga gactcgggca gagcgggagg cggaggccag
     2161 gaggcgggag gagcaggagg cccgggagaa ggctcaggcg gagcaggagg agctggagcg
     2221 gctgcagaag cagaaagagg aggccgaagc tcgatcccga gaagaagcgg agcggcagcg
     2281 tctggagcgg gaaaagcact tccagcgcga ggagcaggag cggcaggagc gcaaaaagcg
     2341 cctggaggaa atcatgaaga ggactcggaa gtcagaagct gctgaaacca aggtcaggat
     2401 gcccccaaga gcggtgctgg gagtggagaa gcaggacaga aaggaggcaa aggccaacaa
     2461 ttccagccca gggatagacc ctgtgaaagc catggaggct cggtcttccg ggctgcagaa
     2521 ggaggctgtg cagaaagagg agctggcccc ccaggagcct cagtggagcc tgccaaacaa
     2581 ggagtcgcca gggtccctgg tgaatggcct gcagcctctc ccagcgcacc aggagaatgg
     2641 cttctcccct aagggaccct ctggggacaa gagtctggga cgaactccag aggcactcct
     2701 gcccttcgca gaggcagaag ccttcctcaa gaaagctgtg gtgcaggccc cgcaggtcac
     2761 agaagtcctt taaggggttg ccttggatcc aggcacaact atgagggctc ctttgcatca
     2821 tctaccagga tgtctgcaag agaaagagac agaacaaagc tggaagtggc ctgggcccct
     2881 gagggttggg tcctctctgt tatttttaac ctgcacctta tagactgatg tctctttggc
     2941 tggagcccct cagtgcattc gtgtgctcac atgcgcggac accccccccc ccacacacac
     3001 acacacatac actcacagcc tctctggcct cctcccatgg ggaagcgcta cctgtagtat
     3061 ttgccttggt ttggtggggt acagtggatg tgaatactgt aaatagcttg tgctcagact
     3121 cctctgcgtg gaggggtggg tgcaagaggc agaccctccc aagactctct ggggagatct
     3181 tcctccctct atttaactgt gactgagggg gaacccaggt ctggggatgg ggggcacctt
     3241 gggccacagg ataccggttg ctttaggagt acccatgccc cctgccctcg cctggaatca
     3301 gtgttattgc atctgatcaa acttctccag aaataaaatg agaatcattc tgcca
//
LOCUS       XM_032651860            3314 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAP7 domain containing 1 (MAP7D1),
            transcript variant X4, mRNA.
ACCESSION   XM_032651860
VERSION     XM_032651860.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3314
                     /gene="MAP7D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 20 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763746"
     CDS             309..2732
                     /gene="MAP7D1"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 1 isoform X4"
                     /protein_id="XP_032507751.1"
                     /db_xref="GeneID:116763746"
                     /translation="MESGSRSEPGAGAAPDVAARTPPEPRPSPEGDPSPPPPPPPMSA
                     LVPDTPPDTPPAMKNTTGPKQLPLEPESPPELVGPRPAPKQEESPFSEVKIRGPTPPA
                     TGPRDARPPRRSSQPSPTAGSAADSPPTKQDAKKAGERHKLAKERREERAKYLAAKKA
                     VWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQ
                     RSVKKTWAEIRQQRWSWAGALHHSSPGRKPSGSRCSVSAVNLPKHVDSIINKRLSKSS
                     ATLWNSPSRNRSLQLSPWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQAVPVCPRS
                     ASASPLTPCSIPRSGHRCAPAGERRKASAGGSPAPARLRPEASLVQKKEKKDKERENE
                     KEKSALARERSLKKRQSLPASPRARLSTVNTEFSPKSKARPSSPSTSWHRPASPCLSP
                     GPGHALPPKPPSPRGTTASPKGRVRRKDEAKETLSVAGPEDKNQSKGKALDEKEPAAP
                     ASPAPSPVPSPTPAQPQEEQPTEIPADTPVLTSPPAPAPLVTPSKPMAGTTDREEATR
                     LLAEKRRQAREQREREEQERRLQAERDKRMREEQLAREFETRAEREAEARRREEQEAR
                     EKAQAEQEELERLQKQKEEAEARSREEAERQRLEREKHFQREEQERQERKKRLEEIMK
                     RTRKSEAAETKKQDRKEAKANNSSPGIDPVKAMEARSSGLQKEAVQKEELAPQEPQWS
                     LPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFAEAEAFLKKAVV
                     QAPQVTEVL"
     misc_feature    <681..>977
                     /gene="MAP7D1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1308..1979
                     /gene="MAP7D1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1965..2381
                     /gene="MAP7D1"
                     /note="MAP7 (E-MAP-115) family; Region: MAP7; pfam05672"
                     /db_xref="CDD:461709"
ORIGIN      
        1 cagcggcgag gccaggccca gcccgggcgg tacaataggg ttgggtcgcg gcggggactg
       61 ggccggcgct gggcgaggag caggatcgcg gccggagccg acagacactg ggcggccggc
      121 gactccgaac ccgcaggcca ccagccgagc cagcctcgac ctaccccgga gctccccccc
      181 gcccttcgaa tcgttgcccg ccgggccggg ccgggcgtga tgcaccgcgg gacccctatc
      241 ctggccgctg gccgccgccg ccgtcgccgc tgctgaaatc ccgaagactc cccagtgacg
      301 ccgcagccat ggagagcggc tcacgttcgg agcccggtgc cggcgcagcc ccagatgtgg
      361 cagccaggac ccctccagag ccaagacctt ctccagaagg tgacccctcc ccgccaccac
      421 caccaccacc gatgtcagcc ctggtgcccg acactccccc agacacccct cccgccatga
      481 agaacaccac tggccctaag cagctcccac tggaaccaga aagcccccca gagctggtag
      541 ggcctaggcc agccccgaag caggaagagt cccctttctc agaagtgaag atcaggggac
      601 ccaccccacc agccacaggc ccacgggatg ccaggcctcc tcgaagaagc agccagccat
      661 ccccaacagc agggtcagct gccgacagcc ctcccacgaa gcaagatgca aagaaggcag
      721 gagagagaca caagctggcg aaggagcggc gggaagagcg ggccaagtac ctggcggcca
      781 agaaggcggt gtggctggag aaggaggaga aggccaaggt gctgcgggag aagcagctcc
      841 aggagcgccg gcggcggctg gaggagcagc ggctcaaagc cgagcaacgc cgagcagccc
      901 tggaggagcg gcagcggcag aaactggaga aaaacaagga gcgatatgaa gcagccatcc
      961 agcggtcagt gaagaagacg tgggccgaaa tccggcagca gcgctggtcc tgggcagggg
     1021 ccctgcacca cagctcccca ggacggaagc ccagtgggag caggtgctcc gtgtcggcag
     1081 taaacctgcc caaacacgtg gactctataa tcaacaagcg gctctcaaag tcctctgcca
     1141 cgctctggaa ctcccccagt agaaatcgca gcctgcagct gagcccatgg gagagcagca
     1201 ttgtggaccg tctgatgacg cccaccctct ccttcctggc acggagtcgc agtgcagtca
     1261 ccctgccccg aaacggccgg gaccaggccg tgcccgtgtg ccctcgctcg gcctccgcca
     1321 gccccctgac gccgtgcagc atcccccgaa gcgggcaccg ctgcgccccc gccggggagc
     1381 gccgcaaggc cagcgccggg ggcagccctg ccccggcacg tctccggccc gaggcttcgc
     1441 tggtgcagaa aaaggagaag aaggacaagg agcgggaaaa cgagaaggag aagagtgccc
     1501 tggcccggga gcgcagcctc aagaagcgac agtcgctgcc ggcctctccg cgcgcgcgcc
     1561 tctccactgt caacacggag ttcagtccca aatccaaggc ccggccatcc tctccctcca
     1621 catcctggca caggcctgcc tctccctgcc tcagcccagg gccaggtcat gctctgcccc
     1681 caaaaccacc gtccccccga ggtaccactg catcacccaa ggggcgggtt cggaggaagg
     1741 atgaagcaaa ggagaccctc agtgtggcgg ggcctgagga caagaaccag agcaagggca
     1801 aggcccttga cgagaaggag cctgcagccc cagcctcacc cgcaccctcg cctgtgccct
     1861 cacccacccc agcccagccc caggaggagc agcccacaga gatccctgca gatacaccag
     1921 tcttgacctc acccccagcc cctgctcccc tggtgacccc tagcaaaccg atggctggca
     1981 cgacggaccg agaagaggcc actaggctcc tggctgagaa gcggcgccag gcccgggagc
     2041 agcgggagcg cgaggaacag gagcggaggc tgcaggcaga aagggacaag cgaatgcgag
     2101 aggagcagct ggctcgggag ttcgagactc gggcagagcg ggaggcggag gccaggaggc
     2161 gggaggagca ggaggcccgg gagaaggctc aggcggagca ggaggagctg gagcggctgc
     2221 agaagcagaa agaggaggcc gaagctcgat cccgagaaga agcggagcgg cagcgtctgg
     2281 agcgggaaaa gcacttccag cgcgaggagc aggagcggca ggagcgcaaa aagcgcctgg
     2341 aggaaatcat gaagaggact cggaagtcag aagctgctga aaccaagaag caggacagaa
     2401 aggaggcaaa ggccaacaat tccagcccag ggatagaccc tgtgaaagcc atggaggctc
     2461 ggtcttccgg gctgcagaag gaggctgtgc agaaagagga gctggccccc caggagcctc
     2521 agtggagcct gccaaacaag gagtcgccag ggtccctggt gaatggcctg cagcctctcc
     2581 cagcgcacca ggagaatggc ttctccccta agggaccctc tggggacaag agtctgggac
     2641 gaactccaga ggcactcctg cccttcgcag aggcagaagc cttcctcaag aaagctgtgg
     2701 tgcaggcccc gcaggtcaca gaagtccttt aaggggttgc cttggatcca ggcacaacta
     2761 tgagggctcc tttgcatcat ctaccaggat gtctgcaaga gaaagagaca gaacaaagct
     2821 ggaagtggcc tgggcccctg agggttgggt cctctctgtt atttttaacc tgcaccttat
     2881 agactgatgt ctctttggct ggagcccctc agtgcattcg tgtgctcaca tgcgcggaca
     2941 cccccccccc cacacacaca cacacataca ctcacagcct ctctggcctc ctcccatggg
     3001 gaagcgctac ctgtagtatt tgccttggtt tggtggggta cagtggatgt gaatactgta
     3061 aatagcttgt gctcagactc ctctgcgtgg aggggtgggt gcaagaggca gaccctccca
     3121 agactctctg gggagatctt cctccctcta tttaactgtg actgaggggg aacccaggtc
     3181 tggggatggg gggcaccttg ggccacagga taccggttgc tttaggagta cccatgcccc
     3241 ctgccctcgc ctggaatcag tgttattgca tctgatcaaa cttctccaga aataaaatga
     3301 gaatcattct gcca
//
LOCUS       XM_032651865            3305 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAP7 domain containing 1 (MAP7D1),
            transcript variant X5, mRNA.
ACCESSION   XM_032651865
VERSION     XM_032651865.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3305
                     /gene="MAP7D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 14 long SRA reads, 1
                     Protein, and 97% coverage of the annotated genomic feature
                     by RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116763746"
     CDS             315..2723
                     /gene="MAP7D1"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 1 isoform X5"
                     /protein_id="XP_032507756.1"
                     /db_xref="GeneID:116763746"
                     /translation="MESGSRSEPGAGAAPDVAARTPPEPRPSPEGDPSPPPPPPPMSA
                     LVPDTPPDTPPAMKNTTGPKQLPLEPESPPELVGPRPAPKQEESPFSEVKIRGPTPPA
                     TGPRDARPPRRSSQPSPTAGSAADSPPTKQDAKKAGERHKLAKERREERAKYLAAKKA
                     VWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQ
                     RSVKKTWAEIRQQRWSWAGALHHSSPGRKPNRSLQLSPWESSIVDRLMTPTLSFLARS
                     RSAVTLPRNGRDQGRGHGPGRAPSRGGTGASLVSRPRPDRTHPSAAVPVCPRSASASP
                     LTPCSIPRSGHRCAPAGERRKASAGGSPAPARLRPEASLVQKKEKKDKERENEKEKSA
                     LARERSLKKRQSLPASPRARLSTVNTEFSPKSKARPSSPSTSWHRPASPCLSPGPGHA
                     LPPKPPSPRGTTASPKGRVRRKDEAKETLSVAGPEDKNQSKGKALDEKEPAAPASPAP
                     SPVPSPTPAQPQEEQPTEIPADTPVLTSPPAPAPLVTPSKPMAGTTDREEATRLLAEK
                     RRQAREQREREEQERRLQAERDKRMREEQLAREFETRAEREAEARRREEQEAREKAQA
                     EQEELERLQKQKEEAEARSREEAERQRLEREKHFQREEQERQERKKRLEEIMKRTRKS
                     EAAETKKQDRKEAKANNSSPGIDPVKAMEARSSGLQKEAVQKEELAPQEPQWSLPNKE
                     SPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFAEAEAFLKKAVVQAPQV
                     TEVL"
     misc_feature    <687..>983
                     /gene="MAP7D1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1152..1970
                     /gene="MAP7D1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1956..2372
                     /gene="MAP7D1"
                     /note="MAP7 (E-MAP-115) family; Region: MAP7; pfam05672"
                     /db_xref="CDD:461709"
ORIGIN      
        1 acgcgccagc ggcgaggcca ggcccagccc gggcggtaca atagggttgg gtcgcggcgg
       61 ggactgggcc ggcgctgggc gaggagcagg atcgcggccg gagccgacag acactgggcg
      121 gccggcgact ccgaacccgc aggccaccag ccgagccagc ctcgacctac cccggagctc
      181 ccccccgccc ttcgaatcgt tgcccgccgg gccgggccgg gcgtgatgca ccgcgggacc
      241 cctatcctgg ccgctggccg ccgccgccgt cgccgctgct gaaatcccga agactcccca
      301 gtgacgccgc agccatggag agcggctcac gttcggagcc cggtgccggc gcagccccag
      361 atgtggcagc caggacccct ccagagccaa gaccttctcc agaaggtgac ccctccccgc
      421 caccaccacc accaccgatg tcagccctgg tgcccgacac tcccccagac acccctcccg
      481 ccatgaagaa caccactggc cctaagcagc tcccactgga accagaaagc cccccagagc
      541 tggtagggcc taggccagcc ccgaagcagg aagagtcccc tttctcagaa gtgaagatca
      601 ggggacccac cccaccagcc acaggcccac gggatgccag gcctcctcga agaagcagcc
      661 agccatcccc aacagcaggg tcagctgccg acagccctcc cacgaagcaa gatgcaaaga
      721 aggcaggaga gagacacaag ctggcgaagg agcggcggga agagcgggcc aagtacctgg
      781 cggccaagaa ggcggtgtgg ctggagaagg aggagaaggc caaggtgctg cgggagaagc
      841 agctccagga gcgccggcgg cggctggagg agcagcggct caaagccgag caacgccgag
      901 cagccctgga ggagcggcag cggcagaaac tggagaaaaa caaggagcga tatgaagcag
      961 ccatccagcg gtcagtgaag aagacgtggg ccgaaatccg gcagcagcgc tggtcctggg
     1021 caggggccct gcaccacagc tccccaggac ggaagcccaa tcgcagcctg cagctgagcc
     1081 catgggagag cagcattgtg gaccgtctga tgacgcccac cctctccttc ctggcacgga
     1141 gtcgcagtgc agtcaccctg ccccgaaacg gccgggacca gggtaggggc cacggtcctg
     1201 ggagagcccc ctcgagaggc gggacagggg ccagcctcgt gagtaggcca cgccccgacc
     1261 gcactcatcc ctccgcagcc gtgcccgtgt gccctcgctc ggcctccgcc agccccctga
     1321 cgccgtgcag catcccccga agcgggcacc gctgcgcccc cgccggggag cgccgcaagg
     1381 ccagcgccgg gggcagccct gccccggcac gtctccggcc cgaggcttcg ctggtgcaga
     1441 aaaaggagaa gaaggacaag gagcgggaaa acgagaagga gaagagtgcc ctggcccggg
     1501 agcgcagcct caagaagcga cagtcgctgc cggcctctcc gcgcgcgcgc ctctccactg
     1561 tcaacacgga gttcagtccc aaatccaagg cccggccatc ctctccctcc acatcctggc
     1621 acaggcctgc ctctccctgc ctcagcccag ggccaggtca tgctctgccc ccaaaaccac
     1681 cgtccccccg aggtaccact gcatcaccca aggggcgggt tcggaggaag gatgaagcaa
     1741 aggagaccct cagtgtggcg gggcctgagg acaagaacca gagcaagggc aaggcccttg
     1801 acgagaagga gcctgcagcc ccagcctcac ccgcaccctc gcctgtgccc tcacccaccc
     1861 cagcccagcc ccaggaggag cagcccacag agatccctgc agatacacca gtcttgacct
     1921 cacccccagc ccctgctccc ctggtgaccc ctagcaaacc gatggctggc acgacggacc
     1981 gagaagaggc cactaggctc ctggctgaga agcggcgcca ggcccgggag cagcgggagc
     2041 gcgaggaaca ggagcggagg ctgcaggcag aaagggacaa gcgaatgcga gaggagcagc
     2101 tggctcggga gttcgagact cgggcagagc gggaggcgga ggccaggagg cgggaggagc
     2161 aggaggcccg ggagaaggct caggcggagc aggaggagct ggagcggctg cagaagcaga
     2221 aagaggaggc cgaagctcga tcccgagaag aagcggagcg gcagcgtctg gagcgggaaa
     2281 agcacttcca gcgcgaggag caggagcggc aggagcgcaa aaagcgcctg gaggaaatca
     2341 tgaagaggac tcggaagtca gaagctgctg aaaccaagaa gcaggacaga aaggaggcaa
     2401 aggccaacaa ttccagccca gggatagacc ctgtgaaagc catggaggct cggtcttccg
     2461 ggctgcagaa ggaggctgtg cagaaagagg agctggcccc ccaggagcct cagtggagcc
     2521 tgccaaacaa ggagtcgcca gggtccctgg tgaatggcct gcagcctctc ccagcgcacc
     2581 aggagaatgg cttctcccct aagggaccct ctggggacaa gagtctggga cgaactccag
     2641 aggcactcct gcccttcgca gaggcagaag ccttcctcaa gaaagctgtg gtgcaggccc
     2701 cgcaggtcac agaagtcctt taaggggttg ccttggatcc aggcacaact atgagggctc
     2761 ctttgcatca tctaccagga tgtctgcaag agaaagagac agaacaaagc tggaagtggc
     2821 ctgggcccct gagggttggg tcctctctgt tatttttaac ctgcacctta tagactgatg
     2881 tctctttggc tggagcccct cagtgcattc gtgtgctcac atgcgcggac accccccccc
     2941 ccacacacac acacacatac actcacagcc tctctggcct cctcccatgg ggaagcgcta
     3001 cctgtagtat ttgccttggt ttggtggggt acagtggatg tgaatactgt aaatagcttg
     3061 tgctcagact cctctgcgtg gaggggtggg tgcaagaggc agaccctccc aagactctct
     3121 ggggagatct tcctccctct atttaactgt gactgagggg gaacccaggt ctggggatgg
     3181 ggggcacctt gggccacagg ataccggttg ctttaggagt acccatgccc cctgccctcg
     3241 cctggaatca gtgttattgc atctgatcaa acttctccag aaataaaatg agaatcattc
     3301 tgcca
//
LOCUS       XM_032651872            3209 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAP7 domain containing 1 (MAP7D1),
            transcript variant X6, mRNA.
ACCESSION   XM_032651872
VERSION     XM_032651872.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3209
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3209
                     /gene="MAP7D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763746"
     CDS             312..2627
                     /gene="MAP7D1"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 1 isoform X6"
                     /protein_id="XP_032507763.1"
                     /db_xref="GeneID:116763746"
                     /translation="MESGSRSEPGAGAAPDVAARTPPEPRPSPEGDPSPPPPPPPMSA
                     LVPDTPPDTPPAMKNTTGPKQLPLEPESPPELVGPRPAPKQEESPFSEVKIRGPTPPA
                     TGPRDARPPRRSSQPSPTAGSAADSPPTKQDAKKAGERHKLAKERREERAKYLAAKKA
                     VWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQ
                     RSVKKTWAEIRQQRWSWAGALHHSSPGRKPNRSLQLSPWESSIVDRLMTPTLSFLARS
                     RSAVTLPRNGRDQAVPVCPRSASASPLTPCSIPRSGHRCAPAGERRKASAGGSPAPAR
                     LRPEASLVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPRARLSTVNTEFSPKS
                     KARPSSPSTSWHRPASPCLSPGPGHALPPKPPSPRGTTASPKGRVRRKDEAKETLSVA
                     GPEDKNQSKGKALDEKEPAAPASPAPSPVPSPTPAQPQEEQPTEIPADTPVLTSPPAP
                     APLVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERRLQAERDKRMREEQLAR
                     EFETRAEREAEARRREEQEAREKAQAEQEELERLQKQKEEAEARSREEAERQRLEREK
                     HFQREEQERQERKKRLEEIMKRTRKSEAAETKQKQDRKEAKANNSSPGIDPVKAMEAR
                     SSGLQKEAVQKEELAPQEPQWSLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSL
                     GRTPEALLPFAEAEAFLKKAVVQAPQVTEVL"
     misc_feature    <684..>980
                     /gene="MAP7D1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1035..1871
                     /gene="MAP7D1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1857..2273
                     /gene="MAP7D1"
                     /note="MAP7 (E-MAP-115) family; Region: MAP7; pfam05672"
                     /db_xref="CDD:461709"
ORIGIN      
        1 cgccagcggc gaggccaggc ccagcccggg cggtacaata gggttgggtc gcggcgggga
       61 ctgggccggc gctgggcgag gagcaggatc gcggccggag ccgacagaca ctgggcggcc
      121 ggcgactccg aacccgcagg ccaccagccg agccagcctc gacctacccc ggagctcccc
      181 cccgcccttc gaatcgttgc ccgccgggcc gggccgggcg tgatgcaccg cgggacccct
      241 atcctggccg ctggccgccg ccgccgtcgc cgctgctgaa atcccgaaga ctccccagtg
      301 acgccgcagc catggagagc ggctcacgtt cggagcccgg tgccggcgca gccccagatg
      361 tggcagccag gacccctcca gagccaagac cttctccaga aggtgacccc tccccgccac
      421 caccaccacc accgatgtca gccctggtgc ccgacactcc cccagacacc cctcccgcca
      481 tgaagaacac cactggccct aagcagctcc cactggaacc agaaagcccc ccagagctgg
      541 tagggcctag gccagccccg aagcaggaag agtccccttt ctcagaagtg aagatcaggg
      601 gacccacccc accagccaca ggcccacggg atgccaggcc tcctcgaaga agcagccagc
      661 catccccaac agcagggtca gctgccgaca gccctcccac gaagcaagat gcaaagaagg
      721 caggagagag acacaagctg gcgaaggagc ggcgggaaga gcgggccaag tacctggcgg
      781 ccaagaaggc ggtgtggctg gagaaggagg agaaggccaa ggtgctgcgg gagaagcagc
      841 tccaggagcg ccggcggcgg ctggaggagc agcggctcaa agccgagcaa cgccgagcag
      901 ccctggagga gcggcagcgg cagaaactgg agaaaaacaa ggagcgatat gaagcagcca
      961 tccagcggtc agtgaagaag acgtgggccg aaatccggca gcagcgctgg tcctgggcag
     1021 gggccctgca ccacagctcc ccaggacgga agcccaatcg cagcctgcag ctgagcccat
     1081 gggagagcag cattgtggac cgtctgatga cgcccaccct ctccttcctg gcacggagtc
     1141 gcagtgcagt caccctgccc cgaaacggcc gggaccaggc cgtgcccgtg tgccctcgct
     1201 cggcctccgc cagccccctg acgccgtgca gcatcccccg aagcgggcac cgctgcgccc
     1261 ccgccgggga gcgccgcaag gccagcgccg ggggcagccc tgccccggca cgtctccggc
     1321 ccgaggcttc gctggtgcag aaaaaggaga agaaggacaa ggagcgggaa aacgagaagg
     1381 agaagagtgc cctggcccgg gagcgcagcc tcaagaagcg acagtcgctg ccggcctctc
     1441 cgcgcgcgcg cctctccact gtcaacacgg agttcagtcc caaatccaag gcccggccat
     1501 cctctccctc cacatcctgg cacaggcctg cctctccctg cctcagccca gggccaggtc
     1561 atgctctgcc cccaaaacca ccgtcccccc gaggtaccac tgcatcaccc aaggggcggg
     1621 ttcggaggaa ggatgaagca aaggagaccc tcagtgtggc ggggcctgag gacaagaacc
     1681 agagcaaggg caaggccctt gacgagaagg agcctgcagc cccagcctca cccgcaccct
     1741 cgcctgtgcc ctcacccacc ccagcccagc cccaggagga gcagcccaca gagatccctg
     1801 cagatacacc agtcttgacc tcacccccag cccctgctcc cctggtgacc cctagcaaac
     1861 cgatggctgg cacgacggac cgagaagagg ccactaggct cctggctgag aagcggcgcc
     1921 aggcccggga gcagcgggag cgcgaggaac aggagcggag gctgcaggca gaaagggaca
     1981 agcgaatgcg agaggagcag ctggctcggg agttcgagac tcgggcagag cgggaggcgg
     2041 aggccaggag gcgggaggag caggaggccc gggagaaggc tcaggcggag caggaggagc
     2101 tggagcggct gcagaagcag aaagaggagg ccgaagctcg atcccgagaa gaagcggagc
     2161 ggcagcgtct ggagcgggaa aagcacttcc agcgcgagga gcaggagcgg caggagcgca
     2221 aaaagcgcct ggaggaaatc atgaagagga ctcggaagtc agaagctgct gaaaccaagc
     2281 agaagcagga cagaaaggag gcaaaggcca acaattccag cccagggata gaccctgtga
     2341 aagccatgga ggctcggtct tccgggctgc agaaggaggc tgtgcagaaa gaggagctgg
     2401 ccccccagga gcctcagtgg agcctgccaa acaaggagtc gccagggtcc ctggtgaatg
     2461 gcctgcagcc tctcccagcg caccaggaga atggcttctc ccctaaggga ccctctgggg
     2521 acaagagtct gggacgaact ccagaggcac tcctgccctt cgcagaggca gaagccttcc
     2581 tcaagaaagc tgtggtgcag gccccgcagg tcacagaagt cctttaaggg gttgccttgg
     2641 atccaggcac aactatgagg gctcctttgc atcatctacc aggatgtctg caagagaaag
     2701 agacagaaca aagctggaag tggcctgggc ccctgagggt tgggtcctct ctgttatttt
     2761 taacctgcac cttatagact gatgtctctt tggctggagc ccctcagtgc attcgtgtgc
     2821 tcacatgcgc ggacaccccc ccccccacac acacacacac atacactcac agcctctctg
     2881 gcctcctccc atggggaagc gctacctgta gtatttgcct tggtttggtg gggtacagtg
     2941 gatgtgaata ctgtaaatag cttgtgctca gactcctctg cgtggagggg tgggtgcaag
     3001 aggcagaccc tcccaagact ctctggggag atcttcctcc ctctatttaa ctgtgactga
     3061 gggggaaccc aggtctgggg atggggggca ccttgggcca caggataccg gttgctttag
     3121 gagtacccat gccccctgcc ctcgcctgga atcagtgtta ttgcatctga tcaaacttct
     3181 ccagaaataa aatgagaatc attctgcca
//
LOCUS       XM_032651880            3203 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAP7 domain containing 1 (MAP7D1),
            transcript variant X7, mRNA.
ACCESSION   XM_032651880
VERSION     XM_032651880.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3203
                     /gene="MAP7D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 16 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763746"
     CDS             309..2621
                     /gene="MAP7D1"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 1 isoform X7"
                     /protein_id="XP_032507771.1"
                     /db_xref="GeneID:116763746"
                     /translation="MESGSRSEPGAGAAPDVAARTPPEPRPSPEGDPSPPPPPPPMSA
                     LVPDTPPDTPPAMKNTTGPKQLPLEPESPPELVGPRPAPKQEESPFSEVKIRGPTPPA
                     TGPRDARPPRRSSQPSPTAGSAADSPPTKQDAKKAGERHKLAKERREERAKYLAAKKA
                     VWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQ
                     RSVKKTWAEIRQQRWSWAGALHHSSPGRKPNRSLQLSPWESSIVDRLMTPTLSFLARS
                     RSAVTLPRNGRDQAVPVCPRSASASPLTPCSIPRSGHRCAPAGERRKASAGGSPAPAR
                     LRPEASLVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPRARLSTVNTEFSPKS
                     KARPSSPSTSWHRPASPCLSPGPGHALPPKPPSPRGTTASPKGRVRRKDEAKETLSVA
                     GPEDKNQSKGKALDEKEPAAPASPAPSPVPSPTPAQPQEEQPTEIPADTPVLTSPPAP
                     APLVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERRLQAERDKRMREEQLAR
                     EFETRAEREAEARRREEQEAREKAQAEQEELERLQKQKEEAEARSREEAERQRLEREK
                     HFQREEQERQERKKRLEEIMKRTRKSEAAETKKQDRKEAKANNSSPGIDPVKAMEARS
                     SGLQKEAVQKEELAPQEPQWSLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLG
                     RTPEALLPFAEAEAFLKKAVVQAPQVTEVL"
     misc_feature    <681..>977
                     /gene="MAP7D1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1032..1868
                     /gene="MAP7D1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1854..2270
                     /gene="MAP7D1"
                     /note="MAP7 (E-MAP-115) family; Region: MAP7; pfam05672"
                     /db_xref="CDD:461709"
ORIGIN      
        1 cagcggcgag gccaggccca gcccgggcgg tacaataggg ttgggtcgcg gcggggactg
       61 ggccggcgct gggcgaggag caggatcgcg gccggagccg acagacactg ggcggccggc
      121 gactccgaac ccgcaggcca ccagccgagc cagcctcgac ctaccccgga gctccccccc
      181 gcccttcgaa tcgttgcccg ccgggccggg ccgggcgtga tgcaccgcgg gacccctatc
      241 ctggccgctg gccgccgccg ccgtcgccgc tgctgaaatc ccgaagactc cccagtgacg
      301 ccgcagccat ggagagcggc tcacgttcgg agcccggtgc cggcgcagcc ccagatgtgg
      361 cagccaggac ccctccagag ccaagacctt ctccagaagg tgacccctcc ccgccaccac
      421 caccaccacc gatgtcagcc ctggtgcccg acactccccc agacacccct cccgccatga
      481 agaacaccac tggccctaag cagctcccac tggaaccaga aagcccccca gagctggtag
      541 ggcctaggcc agccccgaag caggaagagt cccctttctc agaagtgaag atcaggggac
      601 ccaccccacc agccacaggc ccacgggatg ccaggcctcc tcgaagaagc agccagccat
      661 ccccaacagc agggtcagct gccgacagcc ctcccacgaa gcaagatgca aagaaggcag
      721 gagagagaca caagctggcg aaggagcggc gggaagagcg ggccaagtac ctggcggcca
      781 agaaggcggt gtggctggag aaggaggaga aggccaaggt gctgcgggag aagcagctcc
      841 aggagcgccg gcggcggctg gaggagcagc ggctcaaagc cgagcaacgc cgagcagccc
      901 tggaggagcg gcagcggcag aaactggaga aaaacaagga gcgatatgaa gcagccatcc
      961 agcggtcagt gaagaagacg tgggccgaaa tccggcagca gcgctggtcc tgggcagggg
     1021 ccctgcacca cagctcccca ggacggaagc ccaatcgcag cctgcagctg agcccatggg
     1081 agagcagcat tgtggaccgt ctgatgacgc ccaccctctc cttcctggca cggagtcgca
     1141 gtgcagtcac cctgccccga aacggccggg accaggccgt gcccgtgtgc cctcgctcgg
     1201 cctccgccag ccccctgacg ccgtgcagca tcccccgaag cgggcaccgc tgcgcccccg
     1261 ccggggagcg ccgcaaggcc agcgccgggg gcagccctgc cccggcacgt ctccggcccg
     1321 aggcttcgct ggtgcagaaa aaggagaaga aggacaagga gcgggaaaac gagaaggaga
     1381 agagtgccct ggcccgggag cgcagcctca agaagcgaca gtcgctgccg gcctctccgc
     1441 gcgcgcgcct ctccactgtc aacacggagt tcagtcccaa atccaaggcc cggccatcct
     1501 ctccctccac atcctggcac aggcctgcct ctccctgcct cagcccaggg ccaggtcatg
     1561 ctctgccccc aaaaccaccg tccccccgag gtaccactgc atcacccaag gggcgggttc
     1621 ggaggaagga tgaagcaaag gagaccctca gtgtggcggg gcctgaggac aagaaccaga
     1681 gcaagggcaa ggcccttgac gagaaggagc ctgcagcccc agcctcaccc gcaccctcgc
     1741 ctgtgccctc acccacccca gcccagcccc aggaggagca gcccacagag atccctgcag
     1801 atacaccagt cttgacctca cccccagccc ctgctcccct ggtgacccct agcaaaccga
     1861 tggctggcac gacggaccga gaagaggcca ctaggctcct ggctgagaag cggcgccagg
     1921 cccgggagca gcgggagcgc gaggaacagg agcggaggct gcaggcagaa agggacaagc
     1981 gaatgcgaga ggagcagctg gctcgggagt tcgagactcg ggcagagcgg gaggcggagg
     2041 ccaggaggcg ggaggagcag gaggcccggg agaaggctca ggcggagcag gaggagctgg
     2101 agcggctgca gaagcagaaa gaggaggccg aagctcgatc ccgagaagaa gcggagcggc
     2161 agcgtctgga gcgggaaaag cacttccagc gcgaggagca ggagcggcag gagcgcaaaa
     2221 agcgcctgga ggaaatcatg aagaggactc ggaagtcaga agctgctgaa accaagaagc
     2281 aggacagaaa ggaggcaaag gccaacaatt ccagcccagg gatagaccct gtgaaagcca
     2341 tggaggctcg gtcttccggg ctgcagaagg aggctgtgca gaaagaggag ctggcccccc
     2401 aggagcctca gtggagcctg ccaaacaagg agtcgccagg gtccctggtg aatggcctgc
     2461 agcctctccc agcgcaccag gagaatggct tctcccctaa gggaccctct ggggacaaga
     2521 gtctgggacg aactccagag gcactcctgc ccttcgcaga ggcagaagcc ttcctcaaga
     2581 aagctgtggt gcaggccccg caggtcacag aagtccttta aggggttgcc ttggatccag
     2641 gcacaactat gagggctcct ttgcatcatc taccaggatg tctgcaagag aaagagacag
     2701 aacaaagctg gaagtggcct gggcccctga gggttgggtc ctctctgtta tttttaacct
     2761 gcaccttata gactgatgtc tctttggctg gagcccctca gtgcattcgt gtgctcacat
     2821 gcgcggacac cccccccccc acacacacac acacatacac tcacagcctc tctggcctcc
     2881 tcccatgggg aagcgctacc tgtagtattt gccttggttt ggtggggtac agtggatgtg
     2941 aatactgtaa atagcttgtg ctcagactcc tctgcgtgga ggggtgggtg caagaggcag
     3001 accctcccaa gactctctgg ggagatcttc ctccctctat ttaactgtga ctgaggggga
     3061 acccaggtct ggggatgggg ggcaccttgg gccacaggat accggttgct ttaggagtac
     3121 ccatgccccc tgccctcgcc tggaatcagt gttattgcat ctgatcaaac ttctccagaa
     3181 ataaaatgag aatcattctg cca
//
LOCUS       XM_032651889            2910 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAP7 domain containing 1 (MAP7D1),
            transcript variant X8, mRNA.
ACCESSION   XM_032651889
VERSION     XM_032651889.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2910
                     /gene="MAP7D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 16 long SRA reads, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763746"
     CDS             16..2328
                     /gene="MAP7D1"
                     /codon_start=1
                     /product="MAP7 domain-containing protein 1 isoform X8"
                     /protein_id="XP_032507780.1"
                     /db_xref="GeneID:116763746"
                     /translation="MAADPARELFRSAVSDVAARTPPEPRPSPEGDPSPPPPPPPMSA
                     LVPDTPPDTPPAMKNTTGPKQLPLEPESPPELVGPRPAPKQEESPFSEVKIRGPTPPA
                     TGPRDARPPRRSSQPSPTAGSAADSPPTKQDAKKAGERHKLAKERREERAKYLAAKKA
                     VWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQ
                     RSVKKTWAEIRQQRWSWAGALHHSSPGRKPNRSLQLSPWESSIVDRLMTPTLSFLARS
                     RSAVTLPRNGRDQAVPVCPRSASASPLTPCSIPRSGHRCAPAGERRKASAGGSPAPAR
                     LRPEASLVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPRARLSTVNTEFSPKS
                     KARPSSPSTSWHRPASPCLSPGPGHALPPKPPSPRGTTASPKGRVRRKDEAKETLSVA
                     GPEDKNQSKGKALDEKEPAAPASPAPSPVPSPTPAQPQEEQPTEIPADTPVLTSPPAP
                     APLVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERRLQAERDKRMREEQLAR
                     EFETRAEREAEARRREEQEAREKAQAEQEELERLQKQKEEAEARSREEAERQRLEREK
                     HFQREEQERQERKKRLEEIMKRTRKSEAAETKKQDRKEAKANNSSPGIDPVKAMEARS
                     SGLQKEAVQKEELAPQEPQWSLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLG
                     RTPEALLPFAEAEAFLKKAVVQAPQVTEVL"
     misc_feature    <388..>684
                     /gene="MAP7D1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <739..1575
                     /gene="MAP7D1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1561..1977
                     /gene="MAP7D1"
                     /note="MAP7 (E-MAP-115) family; Region: MAP7; pfam05672"
                     /db_xref="CDD:461709"
ORIGIN      
        1 tggaggctgg gaacaatggc cgccgacccg gccagagagc tcttcagatc tgcagtctca
       61 gatgtggcag ccaggacccc tccagagcca agaccttctc cagaaggtga cccctccccg
      121 ccaccaccac caccaccgat gtcagccctg gtgcccgaca ctcccccaga cacccctccc
      181 gccatgaaga acaccactgg ccctaagcag ctcccactgg aaccagaaag ccccccagag
      241 ctggtagggc ctaggccagc cccgaagcag gaagagtccc ctttctcaga agtgaagatc
      301 aggggaccca ccccaccagc cacaggccca cgggatgcca ggcctcctcg aagaagcagc
      361 cagccatccc caacagcagg gtcagctgcc gacagccctc ccacgaagca agatgcaaag
      421 aaggcaggag agagacacaa gctggcgaag gagcggcggg aagagcgggc caagtacctg
      481 gcggccaaga aggcggtgtg gctggagaag gaggagaagg ccaaggtgct gcgggagaag
      541 cagctccagg agcgccggcg gcggctggag gagcagcggc tcaaagccga gcaacgccga
      601 gcagccctgg aggagcggca gcggcagaaa ctggagaaaa acaaggagcg atatgaagca
      661 gccatccagc ggtcagtgaa gaagacgtgg gccgaaatcc ggcagcagcg ctggtcctgg
      721 gcaggggccc tgcaccacag ctccccagga cggaagccca atcgcagcct gcagctgagc
      781 ccatgggaga gcagcattgt ggaccgtctg atgacgccca ccctctcctt cctggcacgg
      841 agtcgcagtg cagtcaccct gccccgaaac ggccgggacc aggccgtgcc cgtgtgccct
      901 cgctcggcct ccgccagccc cctgacgccg tgcagcatcc cccgaagcgg gcaccgctgc
      961 gcccccgccg gggagcgccg caaggccagc gccgggggca gccctgcccc ggcacgtctc
     1021 cggcccgagg cttcgctggt gcagaaaaag gagaagaagg acaaggagcg ggaaaacgag
     1081 aaggagaaga gtgccctggc ccgggagcgc agcctcaaga agcgacagtc gctgccggcc
     1141 tctccgcgcg cgcgcctctc cactgtcaac acggagttca gtcccaaatc caaggcccgg
     1201 ccatcctctc cctccacatc ctggcacagg cctgcctctc cctgcctcag cccagggcca
     1261 ggtcatgctc tgcccccaaa accaccgtcc ccccgaggta ccactgcatc acccaagggg
     1321 cgggttcgga ggaaggatga agcaaaggag accctcagtg tggcggggcc tgaggacaag
     1381 aaccagagca agggcaaggc ccttgacgag aaggagcctg cagccccagc ctcacccgca
     1441 ccctcgcctg tgccctcacc caccccagcc cagccccagg aggagcagcc cacagagatc
     1501 cctgcagata caccagtctt gacctcaccc ccagcccctg ctcccctggt gacccctagc
     1561 aaaccgatgg ctggcacgac ggaccgagaa gaggccacta ggctcctggc tgagaagcgg
     1621 cgccaggccc gggagcagcg ggagcgcgag gaacaggagc ggaggctgca ggcagaaagg
     1681 gacaagcgaa tgcgagagga gcagctggct cgggagttcg agactcgggc agagcgggag
     1741 gcggaggcca ggaggcggga ggagcaggag gcccgggaga aggctcaggc ggagcaggag
     1801 gagctggagc ggctgcagaa gcagaaagag gaggccgaag ctcgatcccg agaagaagcg
     1861 gagcggcagc gtctggagcg ggaaaagcac ttccagcgcg aggagcagga gcggcaggag
     1921 cgcaaaaagc gcctggagga aatcatgaag aggactcgga agtcagaagc tgctgaaacc
     1981 aagaagcagg acagaaagga ggcaaaggcc aacaattcca gcccagggat agaccctgtg
     2041 aaagccatgg aggctcggtc ttccgggctg cagaaggagg ctgtgcagaa agaggagctg
     2101 gccccccagg agcctcagtg gagcctgcca aacaaggagt cgccagggtc cctggtgaat
     2161 ggcctgcagc ctctcccagc gcaccaggag aatggcttct cccctaaggg accctctggg
     2221 gacaagagtc tgggacgaac tccagaggca ctcctgccct tcgcagaggc agaagccttc
     2281 ctcaagaaag ctgtggtgca ggccccgcag gtcacagaag tcctttaagg ggttgccttg
     2341 gatccaggca caactatgag ggctcctttg catcatctac caggatgtct gcaagagaaa
     2401 gagacagaac aaagctggaa gtggcctggg cccctgaggg ttgggtcctc tctgttattt
     2461 ttaacctgca ccttatagac tgatgtctct ttggctggag cccctcagtg cattcgtgtg
     2521 ctcacatgcg cggacacccc cccccccaca cacacacaca catacactca cagcctctct
     2581 ggcctcctcc catggggaag cgctacctgt agtatttgcc ttggtttggt ggggtacagt
     2641 ggatgtgaat actgtaaata gcttgtgctc agactcctct gcgtggaggg gtgggtgcaa
     2701 gaggcagacc ctcccaagac tctctgggga gatcttcctc cctctattta actgtgactg
     2761 agggggaacc caggtctggg gatggggggc accttgggcc acaggatacc ggttgcttta
     2821 ggagtaccca tgccccctgc cctcgcctgg aatcagtgtt attgcatctg atcaaacttc
     2881 tccagaaata aaatgagaat cattctgcca
//
LOCUS       XM_032651898            1596 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 683 (ZNF683), mRNA.
ACCESSION   XM_032651898
VERSION     XM_032651898.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                VOSU01000011.1     20749719-20749785   c
            68-192              VOSU01000011.1     20748723-20748847   c
            193-397             VOSU01000011.1     20747904-20748108   c
            398-1092            VOSU01000011.1     20745821-20746515   c
            1093-1221           VOSU01000011.1     20744593-20744721   c
            1222-1257           VOSU01000011.1     20743540-20743575   c
            1258-1259           "NN"               1-2
            1260-1518           VOSU01000011.1     20743281-20743539   c
            1519-1519           "N"                1-1
            1520-1596           VOSU01000011.1     20743204-20743280   c
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1596
                     /gene="ZNF683"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 91% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116763773"
     CDS             79..1596
                     /gene="ZNF683"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: tissue-resident T-cell
                     transcription regulator protein ZNF683"
                     /protein_id="XP_032507789.1"
                     /db_xref="GeneID:116763773"
                     /translation="MKEEPAPELGCCHKTKPLESTGDSLSPHSDFQLCQGDQVLPGFR
                     PLPDTVDAHGPSCASWLCPLPLALARSSLLACPQGPDVYLCTLKSAPPGTAPQGLRED
                     ASSTRHQPPRRPAGSSNGEKLTAKYPLSRDKMGSQRGRAGEGSPGPSFSPHNSSFPNP
                     WQDKKSPSPLAFCSWPPPTPISKELPSHLCPFYPVYPLLLPSPYLVTCGGLPSVQCPS
                     LFMLPQNTSYTTMAVPTLLMNVYEAGHSSTQGETLHPYAGASQASGQTQPSQARNPGS
                     AAARTDSTGLEHAGRAVPAKSAPPGSQAGSSALPYPLKKKNGKTLYECNVCSKSFGQL
                     SNLKVHLRVHSGERPFQCALCQKSFTQFAHLQKHHLVHTGERPHKCPMCHKRFSSSSN
                     LXTHLRLHSGARPFQCSVCPSRFTQHIHLKLHHRLHAPRPCSLAHTHLPLASLACLAR
                     WHQGALDLVVAPSERQIDWDVDKVKVSSASXGKARAASLSSGARTALGRGQGQSN"
     misc_feature    1042..1110
                     /gene="ZNF683"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1048..1110
                     /gene="ZNF683"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1063..1065,1069..1071,1075..1077,1081..1086,
                     1093..1098,1105..1107,1147..1149,1153..1155,1165..1170,
                     1177..1182,1189..1191,1231..1233,1237..1239,1243..1245,
                     1249..1254,1261..1266,1273..1275)
                     /gene="ZNF683"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1084..1161
                     /gene="ZNF683"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1132..1194
                     /gene="ZNF683"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1168..1245
                     /gene="ZNF683"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1216..1278
                     /gene="ZNF683"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1252..1329
                     /gene="ZNF683"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1300..1362
                     /gene="ZNF683"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cagaggctgg tggcccacct gcccacctgc ttccttcccc agccagaagg gacttctgcc
       61 gagccaggta gtgggggcat gaaggaggaa cccgctccag agttgggttg ttgccacaag
      121 actaagcccc tggagagcac aggagactcc ctgtcccccc actcggactt ccagctctgc
      181 caaggcgatc aggtcttgcc aggcttcagg ccacttccag acacagtgga tgcccatggc
      241 ccgtcctgtg ccagctggct gtgccccttg ccactggcac tggccaggtc ttccctgctg
      301 gcctgccctc agggcccgga cgtatacctg tgcaccctga agtcggcacc cccgggcaca
      361 gccccgcagg gtctcagaga ggatgcctcg agcacaaggc accagccacc aaggcggcct
      421 gccggctcct ccaatggcga aaaactcaca gccaagtacc ctctgagcag ggacaagatg
      481 ggaagccagc ggggaagagc tggcgagggg tcccccggcc catccttctc tcctcacaac
      541 agctctttcc caaacccttg gcaagataaa aagagcccca gccccttggc tttctgctcc
      601 tggcccccac ccacccccat ttccaaagaa ctcccatccc acctctgccc gttctatcct
      661 gtgtacccac ttctcctccc ctcaccttac ctggtcacct gtgggggcct accttctgtg
      721 cagtgtccct ccctcttcat gctgccccag aacacctcct acaccaccat ggctgtgccc
      781 accttgctga tgaatgtcta tgaggccggg cactccagca cccaggggga gaccctgcac
      841 ccctacgcag gggcctctca agcctctggc caaacccaac cctcccaggc ccggaatcca
      901 ggctctgcag ctgccaggac cgactccaca gggctggagc atgctggccg ggcggttcca
      961 gcaaagtcgg ccccgccggg ctcccaggcg ggctcttcgg cactgcctta tccgctgaag
     1021 aaaaagaatg gcaaaaccct gtatgagtgc aacgtgtgca gcaagagctt tgggcagctc
     1081 tccaacctca aggtccatct gcgtgtgcac agcggggagc gcccgttcca gtgtgccctg
     1141 tgccagaaga gcttcaccca gttcgcccac ctgcagaagc accacctggt gcatactggg
     1201 gagcggcccc acaagtgccc gatgtgccac aaacgcttca gcagctccag caacctcnng
     1261 actcacctgc gcctgcactc aggggcccgg cccttccagt gcagtgtctg cccaagtcgc
     1321 ttcacgcagc acatccacct gaagctgcac catcggctgc atgcaccacg gccctgcagc
     1381 cttgctcaca cccacctgcc cctggcgtct cttgcctgcc ttgcccgatg gcaccagggg
     1441 gcactagatc ttgtggtggc cccatcagag aggcagatag actgggacgt ggacaaggtc
     1501 aaggtgtcct cagcatccnc ggggaaggca agggcagcca gcctgagcag tggtgccagg
     1561 actgccctgg ggagggggca ggggcagagc aattaa
//
LOCUS       XM_032651921            1752 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus EF-hand calcium binding domain 2
            (EFCAB2), mRNA.
ACCESSION   XM_032651921
VERSION     XM_032651921.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1752
                     /gene="EFCAB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763792"
     CDS             1141..1635
                     /gene="EFCAB2"
                     /codon_start=1
                     /product="dynein regulatory complex protein 8"
                     /protein_id="XP_032507812.1"
                     /db_xref="GeneID:116763792"
                     /translation="MADDRDREGTEIAVAEFHKKIKDAFEVFDHESNNTVDVREIGTI
                     IRSLGCCPSEGELHDLIAEVEEEEPTGYIRFEKFLPVMTEVLLERRYRPIPEDTLHRA
                     FEVLDPAKRGFLSKEELIKHMTGEGEPFSQEEMEEMLSAAIDPESNSIHYKDYITMMV
                     IDEN"
     misc_feature    1168..1620
                     /gene="EFCAB2"
                     /note="calmodulin; Provisional; Region: PTZ00184"
                     /db_xref="CDD:185504"
ORIGIN      
        1 ttttgaaggc ctcttaatat ttagtttata atcgattttt acataaaatc aagtaattaa
       61 attagtacac acatgcattt aaatagcatc taaaactcgt ttgaaaatat atatttgttt
      121 gaaccatacc attaggcata ttactcaaaa atcattttta aaagaaaata ttctagtata
      181 gtgaactttt ccttaaaatg agacgaaaac ttaacatcat gccacggctt cgaagtttta
      241 gaaaagcgag atttaaaact ttccttccca gtaattttaa cttgaggtct tgtcaaattt
      301 cacaagaaat ttcaagtacg taacagtgag cataagatgg gcacgtttct gttgctatga
      361 gaaccttcta ttttgtatca gaaattgcag ccttgacggc gcagtgtttg cgccgatttt
      421 acacgttttt ctacagcgat tccgctcctc cagtaataac agtttaatgg ctctggtctc
      481 ctcccgcgcc ggcccagttt tccgtcccag ctccagctct cgcccgccgg gcagtccccg
      541 tctctgggag cgagcggcga gcactggacg ggagaaaacg gggggccaga ggtggggcag
      601 gtccggcctc tccgcggggt gtggacggga agaagaggtg ggattgccgg ttggttctgt
      661 caccccggag ccgagttctg cacccgtctc tccaattgcg ttttaaaata tgcagtaaaa
      721 aaaaatcgag caacgccaca tcctacaaac tggaggggag ggggagagca ttgtgtcccc
      781 aaacggatca taaacaaggg aaaggagggt ttcggaactt tattattaaa cacttcacgc
      841 caggaaaacc agggctcagg cctcggtact gaagggatag gctgaagccc cagacgcggc
      901 tcagtggtcg cgagcggcgg gtccgggctt ccggtctccc gggcgccaga gagtcatggc
      961 gggaaggggg agggcgcgcg ctccaagctt tccctccccc acccacaccc agggtcttct
     1021 tccttcgaga ttcggagccg cctatcctcc agggccgact agccgcaggg ctgcgggggt
     1081 ccaggacgcc gcgacatagc ttagcgacaa cgctctcccc ggcgacggcg ccgcaacaag
     1141 atggcggacg acagagacag ggaaggcaca gagatagcag tagcagaatt tcacaaaaaa
     1201 atcaaagacg cttttgaagt atttgaccat gagtcaaata atacagtgga tgtgagagag
     1261 atcggaacaa ttatcaggtc attaggatgc tgccctagtg aaggagagct acatgatctc
     1321 attgcagagg tggaggaaga agaacccact ggatacattc gatttgaaaa atttcttcca
     1381 gtgatgactg aagtactact ggaaagaaga tatagaccaa ttccagaaga tacccttcat
     1441 cgagcttttg aggtgttaga tccagctaaa cgtggatttc tttctaagga agaattgatc
     1501 aagcatatga ctggagaagg tgagcctttt tctcaggagg aaatggaaga aatgttgtct
     1561 gctgcaattg atccagaatc gaattcaatt cattacaagg actatataac gatgatggtg
     1621 atagatgaaa attaaacact ctacagactt catttctaat tgaaagatca ttttaagaat
     1681 tgcttgtcct tgttaatttc acattttatt ttataattcc tacatactgc taattaatgc
     1741 cttgtgacaa ct
//
LOCUS       XM_032651933            2971 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 4A (SEMA4A), transcript
            variant X1, mRNA.
ACCESSION   XM_032651933
VERSION     XM_032651933.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2971
                     /gene="SEMA4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763798"
     CDS             59..2248
                     /gene="SEMA4A"
                     /codon_start=1
                     /product="semaphorin-4A isoform X1"
                     /protein_id="XP_032507824.1"
                     /db_xref="GeneID:116763798"
                     /translation="MALPALGLDSWSLLGLFLFQLLLLLLPPPTTARGDGQGPTPRVK
                     YYAGDGRRALSFFHQKGLQDFDTLLLSGDGDTLYVGAREAILALNIQDPGAPRLKNMI
                     PWPASDRKKSECAFKKKSNEELQDSNLLPISEDKVVEGKGQSPFDPAHKHTAVLADGM
                     LYSGTMNNFLGSEPILMRTLGSQPVLKTDNFLRWLQPDASFVAAIPSTHVVYFFFEET
                     ASEFEFFEKLHTSRVARVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAV
                     LLADNSSTDPYVYAVFTSQWQVGGTRSSAVCAFSLKDIKHVFEGKYKELNKETSRWTT
                     YGFSDISPRPGSCLEGPSSDKALTFMKDHFLMDEPVVGTPLLVKSGVEYTRLAVETAQ
                     GIYGNSHLVMYLGTSTGSLHKAVVSGDNNAYLVEEIQLLPDPEPVRNLQLAPTQGAVF
                     AGFSGGIWRVPRANCSVYDSCVDCVLARDPHCAWDPESQICSLLPTPIPKSWKQDMER
                     GNPEWACASGPMGRSGRPRSRPQIIKEVLAVPNSILELPCPHLSALASYHWSHGTAAI
                     PDISSTVYHGSLLLLLRDGVGGLYQCWATENDFSYPVVSYWVDSQDQPLALDPELAGI
                     PRERMEASLTGVGGGAALAAPRSYWPHFLTVTVLLALVLSGALILLLASPLGALRARG
                     KVQGCGTLPLGEKAPLSREQCLQSPKEFRTSASDVDADSNLQGTEVA"
     misc_feature    224..1447
                     /gene="SEMA4A"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1448..1582
                     /gene="SEMA4A"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    1658..1876
                     /gene="SEMA4A"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1688..1702
                     /gene="SEMA4A"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1724..1738
                     /gene="SEMA4A"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1781..1795
                     /gene="SEMA4A"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1823..1840
                     /gene="SEMA4A"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 cagagagtgg cgggtgcctg tttccccaga gccttctggt gacagcctct ggctgagcat
       61 ggcccttcca gccctgggcc tggactcctg gagcctcctg ggccttttcc tcttccagct
      121 gcttctgctg ctcctgccac caccgacgac tgcacggggt gacggacagg ggcccacacc
      181 cagggtcaaa tactacgcag gggatggacg cagagctctt agcttcttcc accagaaggg
      241 cctccaggat tttgacactc tgctcctgag tggtgatgga gacactctct atgtgggggc
      301 tcgagaggcc attctggctt tgaatatcca ggatccaggg gcaccaaggc tgaagaacat
      361 gataccctgg ccagccagtg accgaaaaaa gagtgaatgt gcctttaaga agaagagcaa
      421 tgaggaactc caagattcca acctgttgcc catctccgag gacaaggttg tagaggggaa
      481 aggccaaagc cccttcgacc ccgcccataa gcacacggct gtcctggcag atgggatgct
      541 ctattccggc accatgaaca acttcctggg cagtgagccc attctgatgc gcacactggg
      601 atcccagcct gtcctcaaga cggacaattt cctccgctgg ctgcaaccgg acgcctcctt
      661 cgtggcagcc atcccttcga cccacgtggt ctacttcttc ttcgaggaga cagccagcga
      721 gtttgagttc ttcgagaagc tccacacatc ccgggtggcc agagtctgca agaacgacgt
      781 gggcggcgaa aagctgctgc agaagaagtg gaccaccttc ttgaaggccc agctactctg
      841 cgcccagccg gggcagctgc ccttcaacat catccgtcac gctgtcctgc tggcagacaa
      901 ttcctccacc gatccctatg tctacgctgt cttcacctct cagtggcagg ttggtgggac
      961 caggagctct gctgtctgtg ctttctcact caaggacatc aagcatgtct ttgaggggaa
     1021 gtataaggaa ttgaacaaag agacttcacg ctggactact tacgggttct ctgatatcag
     1081 tcctcggcca ggcagctgct tggagggccc ctcctctgat aaagccttga ccttcatgaa
     1141 ggaccatttc ctgatggatg agccggtggt ggggacaccc ctgctggtga agtctggtgt
     1201 ggagtacaca cggcttgcgg tggagacagc ccagggcatc tacgggaata gccatctggt
     1261 catgtacctg ggcaccagca cagggtccct ccacaaggct gtggtgagtg gggacaacaa
     1321 tgcttatctg gtggaggaga tccagctgct ccctgaccct gagcctgttc gcaacctgca
     1381 gctggccccc acccagggcg cagtgtttgc aggcttctca ggaggcatct ggagggttcc
     1441 ccgagccaac tgtagtgtct acgacagctg tgtggactgt gtccttgccc gggaccctca
     1501 ctgtgcttgg gacccagagt cccaaatctg cagcctcctg cccaccccca tcccgaagtc
     1561 ctggaagcag gacatggagc gtgggaaccc agagtgggca tgtgccagtg gccccatggg
     1621 caggagcgga aggcctcgga gccgccccca aatcattaaa gaagtcctgg ctgtccccaa
     1681 ctctatcctg gagctcccct gcccccacct ctcagctctg gcctcttacc actggagtca
     1741 cggcacagca gcgatcccgg acatctcttc cacagtctac catggctccc tcttgctgct
     1801 actgcgagat ggggtggggg gtctctatca gtgctgggcc actgagaatg acttctcata
     1861 ccctgtggtc tcctactggg tggacagtca ggaccaaccc ctggccctgg atcctgaact
     1921 ggcgggcatt ccccgggaac gcatggaggc ctcgctgacc ggagtcggtg gtggggctgc
     1981 cctggctgcc ccgcggtcct actggcccca cttcctcacc gtcactgtac tccttgcctt
     2041 agtgctttca ggagccctca tcctcctcct cgcctcccct ttgggggcac tccgagcccg
     2101 gggcaaggtc caaggctgtg ggaccctgcc cctcggggag aaggccccat tgagcaggga
     2161 gcagtgcctc caatccccca aggaattcag gacctctgcc agtgatgtgg acgctgacag
     2221 caacctccag ggcactgagg tggcttaaac tctgggtaca agctggagct gtcgggtagg
     2281 gcagggcgcc tggccgtgct ggctgggggt accgggagca gtgcagccct ggctagggtg
     2341 ggcgtagcac aaaagaccac cttcctccca caagaggacc ttctctgcca ttctgtgcca
     2401 ccgatagcac tcagtggggc tgggcacagc ggtctgactc ccctatggga ctcccttctg
     2461 ccaagcacgt ggcctctcta atgggggctg ccccagacct ggacctaggc tatgatagga
     2521 ggacctagag aggatccttc agttctggcc attccgggat cttccagaaa catactgcta
     2581 caagagaccc taaaacacca aacacctaag caactataag atagcacacc acacctggag
     2641 actccactct aaaagcagct gccaccttgg acaccaacac tcccctctcc caaggctctc
     2701 caggactctg cagggagctg ctcccttcct gctcccctta tcaactcaac cagggaggtc
     2761 tttcctgaag tctcacctcc ttccatcttg cttcagttgg ggcagattta accccttctg
     2821 gcctggctag aacacagggg taatctgagc cttgttcact ccttttccct gactgacccc
     2881 tggacccctt tcctctcccc tctcctttgt tttgggattc aaaaatgact tgtcacagac
     2941 agtttatttt ttattaaaaa gacaaagctt a
//
LOCUS       XM_032651942            3163 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 4A (SEMA4A), transcript
            variant X2, mRNA.
ACCESSION   XM_032651942
VERSION     XM_032651942.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3163
                     /gene="SEMA4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763798"
     CDS             152..2440
                     /gene="SEMA4A"
                     /codon_start=1
                     /product="semaphorin-4A isoform X2"
                     /protein_id="XP_032507833.1"
                     /db_xref="GeneID:116763798"
                     /translation="MALPALGLDSWSLLGLFLFQLLLLLLPPPTTARGDGQGPTPRVK
                     YYAGDGRRALSFFHQKGLQDFDTLLLSGDGDTLYVGAREAILALNIQDPGAPRLKNMI
                     PWPASDRKKSECAFKKKSNETQCFNFIRVLVSFNATHLYACGTFAFSPACTFIELQDS
                     NLLPISEDKVVEGKGQSPFDPAHKHTAVLADGMLYSGTMNNFLGSEPILMRTLGSQPV
                     LKTDNFLRWLQPDASFVAAIPSTHVVYFFFEETASEFEFFEKLHTSRVARVCKNDVGG
                     EKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLADNSSTDPYVYAVFTSQWQVGGT
                     RSSAVCAFSLKDIKHVFEGKYKELNKETSRWTTYGFSDISPRPGSCLEGPSSDKALTF
                     MKDHFLMDEPVVGTPLLVKSGVEYTRLAVETAQGIYGNSHLVMYLGTSTGSLHKAVVS
                     GDNNAYLVEEIQLLPDPEPVRNLQLAPTQGAVFAGFSGGIWRVPRANCSVYDSCVDCV
                     LARDPHCAWDPESQICSLLPTPIPKSWKQDMERGNPEWACASGPMGRSGRPRSRPQII
                     KEVLAVPNSILELPCPHLSALASYHWSHGTAAIPDISSTVYHGSLLLLLRDGVGGLYQ
                     CWATENDFSYPVVSYWVDSQDQPLALDPELAGIPRERMEASLTGVGGGAALAAPRSYW
                     PHFLTVTVLLALVLSGALILLLASPLGALRARGKVQGCGTLPLGEKAPLSREQCLQSP
                     KEFRTSASDVDADSNLQGTEVA"
     misc_feature    317..1639
                     /gene="SEMA4A"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1640..1774
                     /gene="SEMA4A"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    1850..2068
                     /gene="SEMA4A"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1880..1894
                     /gene="SEMA4A"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1916..1930
                     /gene="SEMA4A"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1973..1987
                     /gene="SEMA4A"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2015..2032
                     /gene="SEMA4A"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gggtctgggt gggagtttcc cttgattctg agagtctaca aaatgttctc tgtgtggctt
       61 agaccatggc ttctcccaag gatctggcaa caagactcca tgagagtctg gagaagtctt
      121 agagccttct ggtgacagcc tctggctgag catggccctt ccagccctgg gcctggactc
      181 ctggagcctc ctgggccttt tcctcttcca gctgcttctg ctgctcctgc caccaccgac
      241 gactgcacgg ggtgacggac aggggcccac acccagggtc aaatactacg caggggatgg
      301 acgcagagct cttagcttct tccaccagaa gggcctccag gattttgaca ctctgctcct
      361 gagtggtgat ggagacactc tctatgtggg ggctcgagag gccattctgg ctttgaatat
      421 ccaggatcca ggggcaccaa ggctgaagaa catgataccc tggccagcca gtgaccgaaa
      481 aaagagtgaa tgtgccttta agaagaagag caatgagaca cagtgtttca actttattcg
      541 tgtcctggtc tccttcaatg ccacccatct ctacgcctgt ggcaccttcg ccttcagccc
      601 tgcttgtacc ttcattgaac tccaagattc caacctgttg cccatctccg aggacaaggt
      661 tgtagagggg aaaggccaaa gccccttcga ccccgcccat aagcacacgg ctgtcctggc
      721 agatgggatg ctctattccg gcaccatgaa caacttcctg ggcagtgagc ccattctgat
      781 gcgcacactg ggatcccagc ctgtcctcaa gacggacaat ttcctccgct ggctgcaacc
      841 ggacgcctcc ttcgtggcag ccatcccttc gacccacgtg gtctacttct tcttcgagga
      901 gacagccagc gagtttgagt tcttcgagaa gctccacaca tcccgggtgg ccagagtctg
      961 caagaacgac gtgggcggcg aaaagctgct gcagaagaag tggaccacct tcttgaaggc
     1021 ccagctactc tgcgcccagc cggggcagct gcccttcaac atcatccgtc acgctgtcct
     1081 gctggcagac aattcctcca ccgatcccta tgtctacgct gtcttcacct ctcagtggca
     1141 ggttggtggg accaggagct ctgctgtctg tgctttctca ctcaaggaca tcaagcatgt
     1201 ctttgagggg aagtataagg aattgaacaa agagacttca cgctggacta cttacgggtt
     1261 ctctgatatc agtcctcggc caggcagctg cttggagggc ccctcctctg ataaagcctt
     1321 gaccttcatg aaggaccatt tcctgatgga tgagccggtg gtggggacac ccctgctggt
     1381 gaagtctggt gtggagtaca cacggcttgc ggtggagaca gcccagggca tctacgggaa
     1441 tagccatctg gtcatgtacc tgggcaccag cacagggtcc ctccacaagg ctgtggtgag
     1501 tggggacaac aatgcttatc tggtggagga gatccagctg ctccctgacc ctgagcctgt
     1561 tcgcaacctg cagctggccc ccacccaggg cgcagtgttt gcaggcttct caggaggcat
     1621 ctggagggtt ccccgagcca actgtagtgt ctacgacagc tgtgtggact gtgtccttgc
     1681 ccgggaccct cactgtgctt gggacccaga gtcccaaatc tgcagcctcc tgcccacccc
     1741 catcccgaag tcctggaagc aggacatgga gcgtgggaac ccagagtggg catgtgccag
     1801 tggccccatg ggcaggagcg gaaggcctcg gagccgcccc caaatcatta aagaagtcct
     1861 ggctgtcccc aactctatcc tggagctccc ctgcccccac ctctcagctc tggcctctta
     1921 ccactggagt cacggcacag cagcgatccc ggacatctct tccacagtct accatggctc
     1981 cctcttgctg ctactgcgag atggggtggg gggtctctat cagtgctggg ccactgagaa
     2041 tgacttctca taccctgtgg tctcctactg ggtggacagt caggaccaac ccctggccct
     2101 ggatcctgaa ctggcgggca ttccccggga acgcatggag gcctcgctga ccggagtcgg
     2161 tggtggggct gccctggctg ccccgcggtc ctactggccc cacttcctca ccgtcactgt
     2221 actccttgcc ttagtgcttt caggagccct catcctcctc ctcgcctccc ctttgggggc
     2281 actccgagcc cggggcaagg tccaaggctg tgggaccctg cccctcgggg agaaggcccc
     2341 attgagcagg gagcagtgcc tccaatcccc caaggaattc aggacctctg ccagtgatgt
     2401 ggacgctgac agcaacctcc agggcactga ggtggcttaa actctgggta caagctggag
     2461 ctgtcgggta gggcagggcg cctggccgtg ctggctgggg gtaccgggag cagtgcagcc
     2521 ctggctaggg tgggcgtagc acaaaagacc accttcctcc cacaagagga ccttctctgc
     2581 cattctgtgc caccgatagc actcagtggg gctgggcaca gcggtctgac tcccctatgg
     2641 gactcccttc tgccaagcac gtggcctctc taatgggggc tgccccagac ctggacctag
     2701 gctatgatag gaggacctag agaggatcct tcagttctgg ccattccggg atcttccaga
     2761 aacatactgc tacaagagac cctaaaacac caaacaccta agcaactata agatagcaca
     2821 ccacacctgg agactccact ctaaaagcag ctgccacctt ggacaccaac actcccctct
     2881 cccaaggctc tccaggactc tgcagggagc tgctcccttc ctgctcccct tatcaactca
     2941 accagggagg tctttcctga agtctcacct ccttccatct tgcttcagtt ggggcagatt
     3001 taaccccttc tggcctggct agaacacagg ggtaatctga gccttgttca ctccttttcc
     3061 ctgactgacc cctggacccc tttcctctcc cctctccttt gttttgggat tcaaaaatga
     3121 cttgtcacag acagtttatt ttttattaaa aagacaaagc tta
//
LOCUS       XM_032651948            2286 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase related 4
            (PLPPR4), transcript variant X1, mRNA.
ACCESSION   XM_032651948
VERSION     XM_032651948.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2286
                     /gene="PLPPR4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins"
                     /db_xref="GeneID:116763810"
     CDS             139..2286
                     /gene="PLPPR4"
                     /codon_start=1
                     /product="phospholipid phosphatase-related protein type 4
                     isoform X1"
                     /protein_id="XP_032507839.1"
                     /db_xref="GeneID:116763810"
                     /translation="MSAKERPKGKVIKDSVTLLPCFYFVELPILASSVVSLYFLELTD
                     VFKPVHSGFSCYDRSLSMPYIEPTQEAIPFLMLLSLAFAGPAITIMVGEGILYCCLSK
                     RRNGIGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFL
                     TVCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHATLAAFAAVYISMY
                     FNSTLTDSSKLLKPLLVFTFIICGIICGLTRITQYKNHPVDVYCGFLIGGGIALYLGL
                     YAVGNFLPSEESMFQHREALRSLTDLNQDPSRVLSAKNGSSSDGIAHTEGILNRNHRD
                     ASSLTNLKRANADVEIITPRSPMGKENMVTFSNTLPRANTPSVEDPVRRNATIHASMD
                     SARSKQLLTQWKNKNESRKLSLQVIETEPGQSPPRSIEMRSSSEPSRVGVNGDHHGPG
                     NQYLKIQPGTVPGCNNSMPGGPRVSIQSRPGSSQLVHIPEETQENISTSPKSSSARAK
                     WLKAAEKTVACNRSNSQPRIMQVIAMSKQQGVLQSSPKNTEGSTVSCTGSIRYKTLTD
                     HEPSGIVRVEAHPENNRPVIQIPSTEGEGSGSWKWKAPEKGNLRQTYELNDLNRDSES
                     CESLKDSYGSGDRKRSNIDNHEHHHHGITTIRVTPVEGSEIGSETLSISSSRDSTLRR
                     KGNIILIPERSSSPENTRNIFYKGTSPTRAYKD"
     misc_feature    514..963
                     /gene="PLPPR4"
                     /note="PAP2, wunen subfamily. Most likely a family of
                     membrane associated phosphatidic acid phosphatases. Wunen
                     is a drosophila protein expressed in the central nervous
                     system, which provides repellent activity towards
                     primordial germ cells (PGCs), controls the...; Region:
                     PAP2_wunen; cd03384"
                     /db_xref="CDD:239479"
     misc_feature    order(583..585,604..606,742..750,883..885,901..903,
                     913..915)
                     /gene="PLPPR4"
                     /note="active site"
                     /db_xref="CDD:239479"
ORIGIN      
        1 cgcgctggct ccagcggtgc ccgcggggaa tgtgacatca gcggcgccgg gcgcttgcgg
       61 ctggaggagg catctcgcct cggctgcgct gtgcacacct cgccccgggg aaaacgcaga
      121 cccgggcagg cggcagggat gtcggcgaag gagaggccaa agggcaaagt gatcaaggac
      181 agcgtgaccc tcctgccctg cttttatttc gtggagttgc ctatattggc atcatcggtg
      241 gttagcctgt atttcctgga actcacagat gtcttcaaac ctgtgcactc tggattcagc
      301 tgctatgacc ggagtcttag catgccatac attgaaccca cacaggaggc aattccattc
      361 ctcatgctgc ttagcttggc tttcgccgga cctgcaatta cgattatggt aggggaagga
      421 attctctact gttgcctatc caaaagaagg aatggaattg gcctggagcc caatattaat
      481 gccggaggct gcaacttcaa ctctttcctt agaagagccg tcagattcgt tggtgttcat
      541 gtgtttggac tctgctctac agctctcatc acagatatca tccagctgtc cacaggctac
      601 caggcaccgt actttctgac tgtgtgcaag ccaaactata cctctctgaa tgtgtcttgc
      661 aaagagaatt cctacattgt agaagatatt tgctcaggat ctgatcttac agttatcaac
      721 agcggcagaa aatcattccc ttcacaacat gcgacccttg ctgcctttgc agctgtgtac
      781 atttcgatgt acttcaattc cacactaacg gattcctcta agcttctgaa acctctcttg
      841 gtcttcacct ttatcatctg tggaatcatc tgtgggctaa cacggataac tcagtataag
      901 aaccacccag ttgatgtcta ttgtggcttt ttaataggag gaggaattgc tctatacttg
      961 ggtctgtatg ctgtggggaa ttttctgcct agcgaagaga gtatgtttca gcacagagaa
     1021 gccctcaggt ctctgacaga cctcaatcaa gaccccagcc gagttttatc tgctaaaaat
     1081 ggtagcagta gtgacggaat tgctcacaca gaaggcatcc tcaaccgaaa ccatagagat
     1141 gctagctcat tgacaaacct caaaagggca aatgctgatg tagaaatcat cactccacgg
     1201 agccccatgg ggaaggaaaa catggttacc ttcagcaata ccttgcctag agccaacacc
     1261 ccatccgtgg aagaccctgt gagaagaaac gccaccattc atgcctctat ggattctgct
     1321 agatccaagc agctcctcac ccagtggaag aataagaatg aaagtcgtaa gttgtccctg
     1381 caggttatag agaccgagcc tggacagtca ccacccagat ccattgaaat gaggtcaagc
     1441 tcggagccgt cgagggtggg ggtcaatgga gaccaccatg gtcccggcaa tcagtacctc
     1501 aagatccagc ctggcaccgt ccccgggtgt aacaacagta tgcctggggg accaagagtg
     1561 tccattcagt cccgccccgg gtcctcacag ttagtgcaca tccctgagga gacgcaggaa
     1621 aacataagca cctcccccaa aagcagctcc gctcgggcca agtggctgaa agctgcggag
     1681 aagaccgtgg cctgtaatag aagcaacagc cagcctcgaa tcatgcaagt catagccatg
     1741 tccaagcagc agggcgtcct ccaaagcagc cccaagaaca ccgaaggcag tacggtctcc
     1801 tgcactggct ccatccgcta caaaaccttg acagaccacg agcccagtgg gatcgtgagg
     1861 gttgaggctc acccggagaa caacaggccc gtcatacaga tcccgtccac cgaaggtgaa
     1921 ggcagtggct cctggaaatg gaaagcccct gaaaagggca accttcgcca aacttatgaa
     1981 ctcaacgatc tcaacaggga ctccgaaagc tgtgagtccc tgaaagacag ttatggttct
     2041 ggagatcgaa agagaagcaa cattgataac catgagcatc accaccatgg aatcaccacc
     2101 atccgtgtca ccccagtaga gggcagcgaa attggttcag agaccctgtc catttcttcc
     2161 tcccgcgact ccaccctgcg gagaaagggc aacatcatct taattcctga aagaagcagc
     2221 agccctgaaa acactaggaa tatcttctac aaaggaacct ccccaacgcg ggcttataag
     2281 gattga
//
LOCUS       XM_032651949            2112 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase related 4
            (PLPPR4), transcript variant X2, mRNA.
ACCESSION   XM_032651949
VERSION     XM_032651949.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2112
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2112
                     /gene="PLPPR4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins"
                     /db_xref="GeneID:116763810"
     CDS             139..2112
                     /gene="PLPPR4"
                     /codon_start=1
                     /product="phospholipid phosphatase-related protein type 4
                     isoform X2"
                     /protein_id="XP_032507840.1"
                     /db_xref="GeneID:116763810"
                     /translation="MSAKERPKGKVIKDSVTLLPCFYFVELPILASSVVSLYFLELTD
                     VFKPVHSGFSCYDRSLSMPYIEPTQEAIPFLMLLSLAFAGPAITIMVGEGILYCCLSK
                     RRNGIGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFL
                     TVCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHATLAAFAAVYISGL
                     YAVGNFLPSEESMFQHREALRSLTDLNQDPSRVLSAKNGSSSDGIAHTEGILNRNHRD
                     ASSLTNLKRANADVEIITPRSPMGKENMVTFSNTLPRANTPSVEDPVRRNATIHASMD
                     SARSKQLLTQWKNKNESRKLSLQVIETEPGQSPPRSIEMRSSSEPSRVGVNGDHHGPG
                     NQYLKIQPGTVPGCNNSMPGGPRVSIQSRPGSSQLVHIPEETQENISTSPKSSSARAK
                     WLKAAEKTVACNRSNSQPRIMQVIAMSKQQGVLQSSPKNTEGSTVSCTGSIRYKTLTD
                     HEPSGIVRVEAHPENNRPVIQIPSTEGEGSGSWKWKAPEKGNLRQTYELNDLNRDSES
                     CESLKDSYGSGDRKRSNIDNHEHHHHGITTIRVTPVEGSEIGSETLSISSSRDSTLRR
                     KGNIILIPERSSSPENTRNIFYKGTSPTRAYKD"
     misc_feature    514..>795
                     /gene="PLPPR4"
                     /note="PAP2_like proteins, a super-family of histidine
                     phosphatases and vanadium haloperoxidases, includes type 2
                     phosphatidic acid phosphatase or lipid phosphate
                     phosphatase (LPP), Glucose-6-phosphatase,
                     Phosphatidylglycerophosphatase B and bacterial acid...;
                     Region: PAP2_like; cl00474"
                     /db_xref="CDD:469784"
ORIGIN      
        1 cgcgctggct ccagcggtgc ccgcggggaa tgtgacatca gcggcgccgg gcgcttgcgg
       61 ctggaggagg catctcgcct cggctgcgct gtgcacacct cgccccgggg aaaacgcaga
      121 cccgggcagg cggcagggat gtcggcgaag gagaggccaa agggcaaagt gatcaaggac
      181 agcgtgaccc tcctgccctg cttttatttc gtggagttgc ctatattggc atcatcggtg
      241 gttagcctgt atttcctgga actcacagat gtcttcaaac ctgtgcactc tggattcagc
      301 tgctatgacc ggagtcttag catgccatac attgaaccca cacaggaggc aattccattc
      361 ctcatgctgc ttagcttggc tttcgccgga cctgcaatta cgattatggt aggggaagga
      421 attctctact gttgcctatc caaaagaagg aatggaattg gcctggagcc caatattaat
      481 gccggaggct gcaacttcaa ctctttcctt agaagagccg tcagattcgt tggtgttcat
      541 gtgtttggac tctgctctac agctctcatc acagatatca tccagctgtc cacaggctac
      601 caggcaccgt actttctgac tgtgtgcaag ccaaactata cctctctgaa tgtgtcttgc
      661 aaagagaatt cctacattgt agaagatatt tgctcaggat ctgatcttac agttatcaac
      721 agcggcagaa aatcattccc ttcacaacat gcgacccttg ctgcctttgc agctgtgtac
      781 atttcgggtc tgtatgctgt ggggaatttt ctgcctagcg aagagagtat gtttcagcac
      841 agagaagccc tcaggtctct gacagacctc aatcaagacc ccagccgagt tttatctgct
      901 aaaaatggta gcagtagtga cggaattgct cacacagaag gcatcctcaa ccgaaaccat
      961 agagatgcta gctcattgac aaacctcaaa agggcaaatg ctgatgtaga aatcatcact
     1021 ccacggagcc ccatggggaa ggaaaacatg gttaccttca gcaatacctt gcctagagcc
     1081 aacaccccat ccgtggaaga ccctgtgaga agaaacgcca ccattcatgc ctctatggat
     1141 tctgctagat ccaagcagct cctcacccag tggaagaata agaatgaaag tcgtaagttg
     1201 tccctgcagg ttatagagac cgagcctgga cagtcaccac ccagatccat tgaaatgagg
     1261 tcaagctcgg agccgtcgag ggtgggggtc aatggagacc accatggtcc cggcaatcag
     1321 tacctcaaga tccagcctgg caccgtcccc gggtgtaaca acagtatgcc tgggggacca
     1381 agagtgtcca ttcagtcccg ccccgggtcc tcacagttag tgcacatccc tgaggagacg
     1441 caggaaaaca taagcacctc ccccaaaagc agctccgctc gggccaagtg gctgaaagct
     1501 gcggagaaga ccgtggcctg taatagaagc aacagccagc ctcgaatcat gcaagtcata
     1561 gccatgtcca agcagcaggg cgtcctccaa agcagcccca agaacaccga aggcagtacg
     1621 gtctcctgca ctggctccat ccgctacaaa accttgacag accacgagcc cagtgggatc
     1681 gtgagggttg aggctcaccc ggagaacaac aggcccgtca tacagatccc gtccaccgaa
     1741 ggtgaaggca gtggctcctg gaaatggaaa gcccctgaaa agggcaacct tcgccaaact
     1801 tatgaactca acgatctcaa cagggactcc gaaagctgtg agtccctgaa agacagttat
     1861 ggttctggag atcgaaagag aagcaacatt gataaccatg agcatcacca ccatggaatc
     1921 accaccatcc gtgtcacccc agtagagggc agcgaaattg gttcagagac cctgtccatt
     1981 tcttcctccc gcgactccac cctgcggaga aagggcaaca tcatcttaat tcctgaaaga
     2041 agcagcagcc ctgaaaacac taggaatatc ttctacaaag gaacctcccc aacgcgggct
     2101 tataaggatt ga
//
LOCUS       XM_032651951            3758 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus myelin protein zero like 1 (MPZL1), mRNA.
ACCESSION   XM_032651951
VERSION     XM_032651951.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3758
                     /gene="MPZL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 24 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763836"
     CDS             179..988
                     /gene="MPZL1"
                     /codon_start=1
                     /product="myelin protein zero-like protein 1"
                     /protein_id="XP_032507842.1"
                     /db_xref="GeneID:116763836"
                     /translation="MAAPAGAGALIASPDRRRWLWSVLAVALGLLTAGVSALEVYTPK
                     EIFVANGTQGKLTCKFKSTNTTGTLTSVSWSFQPEGTDTTVSFFHYSQGQVYAGNYPP
                     FKDRISWAGDLDKKDASINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKEIL
                     PAFPVWVVVGIVTAVVLGLTLLVTMILAVLYRRKNSKRDYTGCNTSENVSPVKQAPRK
                     SPSDTEGLVKSLPSGSHQGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN"
     misc_feature    290..640
                     /gene="MPZL1"
                     /note="Immunoglobulin (Ig)-like domain of protein zero
                     (P0) and similar proteins; Region: IgV_P0-like; cd05715"
                     /db_xref="CDD:409380"
     misc_feature    290..361
                     /gene="MPZL1"
                     /note="FR1 [structural motif]; Region: FR1"
                     /db_xref="CDD:409380"
     misc_feature    290..304
                     /gene="MPZL1"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409380"
     misc_feature    order(293..295,299..301,335..337,359..361,491..493,
                     500..502,545..550)
                     /gene="MPZL1"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409380"
     misc_feature    308..328
                     /gene="MPZL1"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409380"
     misc_feature    332..364
                     /gene="MPZL1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409380"
     misc_feature    362..388
                     /gene="MPZL1"
                     /note="CDR1 [structural motif]; Region: CDR1"
                     /db_xref="CDD:409380"
     misc_feature    386..412
                     /gene="MPZL1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409380"
     misc_feature    389..427
                     /gene="MPZL1"
                     /note="FR2 [structural motif]; Region: FR2"
                     /db_xref="CDD:409380"
     misc_feature    428..472
                     /gene="MPZL1"
                     /note="CDR2 [structural motif]; Region: CDR2"
                     /db_xref="CDD:409380"
     misc_feature    431..451
                     /gene="MPZL1"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409380"
     misc_feature    455..472
                     /gene="MPZL1"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409380"
     misc_feature    485..589
                     /gene="MPZL1"
                     /note="FR3 [structural motif]; Region: FR3"
                     /db_xref="CDD:409380"
     misc_feature    494..514
                     /gene="MPZL1"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409380"
     misc_feature    524..550
                     /gene="MPZL1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409380"
     misc_feature    569..592
                     /gene="MPZL1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409380"
     misc_feature    593..613
                     /gene="MPZL1"
                     /note="CDR3 [structural motif]; Region: CDR3"
                     /db_xref="CDD:409380"
     misc_feature    614..640
                     /gene="MPZL1"
                     /note="FR4 [structural motif]; Region: FR4"
                     /db_xref="CDD:409380"
     misc_feature    614..640
                     /gene="MPZL1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409380"
ORIGIN      
        1 gcggggccga ggtctgggcg gagggctggc tggcagcggc tggggccgcg agcggggatt
       61 gcggcgtgga ggtgctagca gacgcgggcg gcggcgagtc ccgagccccc gggccggagc
      121 cgagctaacc gcagtgggga ccggggccca gagccgcggc ggctgcggcc ggaggacgat
      181 ggcagcgccc gccggggccg gggcactgat tgcatcccca gaccgcaggc gctggctgtg
      241 gtcggtgctt gcggtggcgc tcgggctctt gactgctggt gtatcggccc tggaggtgta
      301 tacaccaaaa gaaatcttcg tggcaaatgg gacacaaggg aagctgacat gcaagttcaa
      361 gtctactaac acgaccggca cgttgacctc agtctcctgg agcttccagc cggaggggac
      421 tgacaccact gtgtcgtttt tccactactc ccaagggcaa gtgtatgccg ggaattaccc
      481 accatttaag gacagaatca gctgggctgg agacctcgac aagaaagatg catcaatcaa
      541 catagaaaat atgcagttta tacacaatgg cacctacatc tgtgatgtca aaaatccgcc
      601 tgacattgtt gtccagccag gacacattag gctttatgtt gtagagaaag agattttgcc
      661 tgcgtttccg gtttgggtgg tggtgggtat agttactgct gtggtcctag gtctcactct
      721 gcttgtcacc atgattctgg ctgtcctcta tagaaggaaa aactcgaaac gggattacac
      781 cggctgcaat acatcagaga atgtgtcacc ggttaagcag gctccacgga agtccccctc
      841 cgacacagag ggtctagtaa agagcctacc ttctggatct caccagggcc cagtcatata
      901 tgcgcagcta gaccactctg gcggacatca cagcgacaag attaacaagt cagagtctgt
      961 ggtgtacgca gacatccgga aaaattgaga agaccccagt catatcctga gcaagaaaca
     1021 aatccaaact ggactcttgt gcagaaaatg tagctcataa ccatgtgtgg ccttggaaac
     1081 ctggacacgg acaagcacat gtttattcat agagggagaa aaagaagtgt ataaagaata
     1141 tgtataaata ttctatttaa tcttcctgat gtgaggagcc agtattgcat gatgaagaga
     1201 tggtatgatt ctacgtatac gtaaatcgtc tgtttttgta cttcccttca gggtcattta
     1261 cggttgagaa aatttagaca cattcctgtc accatcattt agatgtggtt tgccttaatg
     1321 gagagggtag cagatctttt agtattctaa tagacatggc cttttcacgt aagggcttaa
     1381 cccgccttcg cgtttattgt acttggagag tggagatgct atgatggaag catgttcagg
     1441 gtggccttta gcccagggtg taccacctat ttggcggttg tttttagaaa gcatccattc
     1501 gctatgccac tcggagacag tgtgagagat tttgttgcta ttatacaggg cagtttttag
     1561 ctttcagtgt tgtgtagact gtaacatcac accctgtaag catattgtct caatttgtgg
     1621 attcatcaca gcaagatgag caaaggatca gtgccggaag tcacttcctt ccaggtactt
     1681 ttagatcaat accataatca atatataatt gaagtagaga acccaggcct ggcttgagga
     1741 gtactgtacc attgggagag caaaaggtgt gttacattct ttgctgaagt ccttcgtact
     1801 tgtaataaga gtccccatac acctgaagga gccgagtttc atttcctttt aagtaggcag
     1861 aaatggaatg attagattgc cagtctccag tatcgcagag tgctttctag agaatcttct
     1921 atataaagct tcagtcatgc ttccagtagg ggcagcgtca gtcatggctt ctagaataga
     1981 ttcacgacgc ctccaaggcc tttgaggcta aaaagggtct agatttttaa aatcagcaaa
     2041 caaggttagt acttctacgt tgggaatctc ttctgtttct gtttctttgt tcttttgata
     2101 aacggtgaga tgaggagaaa tctagacaat ttgggcatcc ttctcaattt attttctccc
     2161 attgaccgcc gcccccaaca ccccatctca aacctatgtg tttttttttt taactcagac
     2221 tgcaaagcat ggtgaaaatc attaaacact tatattgtca ttcccccatt ttctggattt
     2281 tttttttaaa taattttttt catttaaaat tgaaagccca cagttagagg aagaatactg
     2341 acaatagggt cccaggatgt gttcaggtaa gtagggatga caggtaatgt tggtttttct
     2401 ctcatttact ttgaggaccc ctaagagctg ccacctcacc ccaccccgcc ccatcttgtc
     2461 atctttgtga gggagtttga aggctgagtt ttaaggaaac aaagaaggat tgagatttaa
     2521 aggtgtgcac gaagcggtta catagagaaa gggtgtgtga gctacaaaac gaactctgcc
     2581 ccacacgtgt ggtcttttat ttgctgaggg actgttggtt gttattcaca tgatgctcca
     2641 acttacattc cgttgatatg tacgtgggca gggagcgggc tgtgtcatca cacataccgg
     2701 ccgtctccga agctggtgcg tctggcgtgt gttgcggcgt gggaagaaaa cctgctggct
     2761 ctgctgcgtc tgcctgttct gtgctcacag gtcccgcgca ggacacaggg acgcggagcg
     2821 ctctacccga gacggttctg caaagtggtc aactttgcct tgcaccttgg ggcttctctg
     2881 cctccacggt gaaaactcca ggaaccttta ggagacattt ttgtgtgttg ggaaggcggg
     2941 ggttggtgtt gggatgtcac ccttcaggct gatgccagga tgacgatact cttggtgagc
     3001 cctcccactg tgagaattgt acagccatcc gggacttcag ggggaaagaa gacacgtcgt
     3061 ggtgagacca agtgtgtgca ctgatatgtg taacttcctt acagtcgttt ttggcagaga
     3121 aaggggggga tcctccttat cctttcgcag aggtccagcg aatctactat atgtacttcc
     3181 tcacacctcc tgatagcaag agccctgatt tctctgcatg tttgtgaagc tgccacccag
     3241 agcaccaacc ctcactttcg ctaaccacag ccgtgggcct tccctcccct gcctccccgt
     3301 ggcctcctct gtggggcaag ggtggtcagc tgccagcttc ttactctggg tctgtgactg
     3361 attgtctgag agaagccact cacacctggg tggagcacct cagtgttggg gctttttcca
     3421 aaactcctca caccacctcc tgtggatctt ttgacccttt ctcctgtgtc ccagcatcct
     3481 cgtccctgga cacagatgac aacagcaggg ttgcttccaa atggcagggc tgtcctttcc
     3541 atgtctgatt attggcagaa tgagacctct taaaactaca catgattttt ctaagggggc
     3601 acctgaagga ttacttgaga ttaaaatttc aatctatctg tagtttttca atggaaatgt
     3661 attcagctag gtaaaaaaaa acatcaagtt cattaatttt tctttttcaa ttgttgtatt
     3721 tttgtgaaga ttttaataca tctttttcaa ttactgga
//
LOCUS       XM_032651952            5320 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitoguardin 1 (MIGA1), transcript variant
            X1, mRNA.
ACCESSION   XM_032651952
VERSION     XM_032651952.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5320
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5320
                     /gene="MIGA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763852"
     CDS             97..1899
                     /gene="MIGA1"
                     /codon_start=1
                     /product="mitoguardin 1 isoform X1"
                     /protein_id="XP_032507843.1"
                     /db_xref="GeneID:116763852"
                     /translation="MSEETVSESQFSLRTAALRVFDLPLSWYYSLCQIRFSPVAKKLF
                     VVTAVSVVSVIFLARHFKRRRGKKKGKILPWEPEHLILEYTKRAASDKGSSCSSSRQN
                     LTLSLSSAKDKGSQSYNYANGGLFSKYSGSAQSLASVQSVNSCHSCACGNSNSWDKAD
                     EDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACSSIKLGAGDA
                     IAEESIDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLANDMDKDTDITMKG
                     NMDDFGLRDTLSVTSTDSFASAAELAEHKEVQHIYSLESLCHCPFYEEAMHLVEEGKI
                     YSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSETANRIFLAESGRKILSALIVKAR
                     KNPKKFEDVFDEMIYFLEQTDHWDSTEMELAARGVKNLNFYDVVLDFILMDSFEDLEN
                     PPTSIQNVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPV
                     LAWGFLGPRNSLYDLCCFFKNQVLFFLKDIFDFEKVRYSSIETLAEDLMQLLIRRTEL
                     LMAYLGADALRHTSSCISSHSHVMPSGLLEAKVQ"
     misc_feature    175..1809
                     /gene="MIGA1"
                     /note="Mitoguardin; Region: Miga; pfam10265"
                     /db_xref="CDD:463034"
ORIGIN      
        1 acttcgcccc cggggtcggc ctgcggctcg ctgcggcggg gaagtaggcg tgggcaggct
       61 acacttaccc tggagcgcca gattagaaga ggagtcatgt cagaagaaac agtaagtgaa
      121 tcacagtttt ccctgaggac agcagcacta agagtgtttg atcttcctct gtcttggtac
      181 tattctctct gccagatcag attttcgcca gtagctaaaa agttatttgt ggtaactgca
      241 gtgagtgttg tatctgtaat ttttctggcc cgtcacttta aaagaagacg tggaaagaag
      301 aaaggaaaaa tattaccatg ggaaccagag catctcatac ttgaatacac taaaagagca
      361 gcatcagaca aaggttcaag ttgttccagt agcagacaga atttgacact atctttaagt
      421 tctgccaaag acaaaggatc tcagtcttat aattatgcta atggaggact cttcagtaaa
      481 tactcaggtt ctgcacagag tttggcctct gtccagagtg tcaattcttg tcatagctgt
      541 gcttgtggca attctaattc ctgggacaaa gcagatgaag atgatattaa acttgttaat
      601 attcctgtga ccactcctga gaacctatac ttgatgggta tggaattgtt tgaagaggca
      661 ttgcgtcgat gggaacaagc tctaaccttt cgaaatagac aggctgaaga cgaagcctgt
      721 agttccatta aattgggtgc gggagatgcc attgcagaag aaagtataga tgatattatt
      781 agtactgaat ttatccataa acttgaagct ctgctgcaaa gagcatatcg tctccaagag
      841 gagtttgaag ctaccctagg ggcatctgat cctaattccc ttgctaatga tatggacaaa
      901 gatacagata tcaccatgaa ggggaatatg gatgactttg gcctgagaga caccttgagt
      961 gtcacatcaa ccgattcttt tgcttcagca gcagagcttg cagaacacaa agaagtacag
     1021 catatctaca gtctggagtc tctttgccac tgcccttttt acgaagaggc catgcattta
     1081 gttgaagaag gaaaaattta ctcaagagtg cttagaactg aaatgttgga gtgcctagga
     1141 gacagtgatt ttcttgccaa acttcactgt attcgacagg cttttcaggt aattctttca
     1201 gaaacagcca acaggatatt ccttgctgaa agtgggagga aaattttatc agcgttaatt
     1261 gtaaaagcac gaaagaatcc gaagaagttt gaagatgttt ttgatgaaat gatctatttt
     1321 ttagagcaga ctgatcactg ggatagtact gaaatggaac ttgctgctag aggagtgaaa
     1381 aatctaaatt tttatgatgt tgttttggat tttatattaa tggattcctt tgaagattta
     1441 gaaaacccac ccacatccat acagaacgta gtaaataatc gctggctaaa ctcctccttc
     1501 aaagaaaccg ctgtggcttc aagttgttgg tcagtgttga aacagaaaag gcaacagatg
     1561 aagatcccag atggattttt tgcccatttt tatgccattt gtgagcacat cagccctgtc
     1621 ctagcctggg gttttttggg tcctagaaat tctctctatg acttatgttg cttctttaag
     1681 aatcaagttc ttttctttct caaagacatt tttgattttg agaaggtgcg ctactccagt
     1741 atagagactt tggctgaaga cctcatgcag ttgcttattc gccgcactga acttttaatg
     1801 gcctatcttg gagccgacgc actgaggcat acaagtagct gtataagtag tcatagtcat
     1861 gttatgccca gtggcctatt agaagccaaa gtacaataag taccataaaa atcagacaat
     1921 ttcagtgtgc tatgaaatat tttaaggtaa ctattgattt tgtaacatat attacacaga
     1981 attggtggat atggactcag ggagggaaaa aaaacctagt aacgaatgag tgattgtact
     2041 gtacttacac agaagttctg tcattgaatc cccatgtagt gtatccaaag tgcttttttt
     2101 ttttaatctt taggtaataa tctttgtgaa atgtatattt tacagaaata ctgcttgaat
     2161 tgaaaccagt acttgggagt taattgactt gttgtcttga agctgtctga aatgtccagt
     2221 ttcattctca gaagctttgt ttttatgctt tgcacctgga atatatatac tttagccaag
     2281 acttttatgg cccacacatg caagaatata ttactcctag tgtcaacaaa gttaactttg
     2341 cctgaaaatg tatttttaat tgtaaagtta tttgttgttt aatcaaattt aggcagtagt
     2401 ggtgtttaat acgtactgct tacgttattg cttgtgcatt tgcttaagta tttgaatcaa
     2461 agaaattgta atagccgagt atcgttacag aacgtttaaa cgaattgcca ccgagaagtt
     2521 tacaagttta tattagattt actgaagttt ccaaaataca ttacagttgg tcctatgtta
     2581 caatagagag actgaagaaa tttcttttat cttggtatag attagaacat ttcccttgaa
     2641 tgaatattga ttaaaaatat aacacttatt aactatgaca ggcaattaaa atttttccat
     2701 gtagttttga gaccatctcc caacatccta gggtattaat cttgatacag taaaatcatt
     2761 tcttctttct ccttatgcaa aactggcttt tagttgtttc tacagagaac ttagcacact
     2821 gagaatttgt catattataa ccatattttt aagttattca ttgacacttt gaatcttagg
     2881 gagttcttga aggtttttcc cccgaatata gaacaaaata ttttttaatg gtatggaagt
     2941 atgtttcctg tcctttatga tagatgtatg aacaagtggg ttgttcatat gaataaggtt
     3001 cttcagagta tattagatac tttcagagtt gtattaattt tgtgtgtaaa tcatatgcca
     3061 cttatttaga gtggctgtct gagtaaaaca atagattgga tttgttgatt ttgctcctaa
     3121 agtgggcttt attcatttta ggagtgagtt atccagaagg atctaaaata tattttttta
     3181 aatgcatttt taaagtgcct agtttccgat gaatgaatag aaaatgaaaa gtggggaaag
     3241 aagcataatc ttttaaggtt ttaagtttat atatgtgcca aatttatgta atattagtta
     3301 caaaatagga cattcagaac ctttatgctg tttgcatgta ctgtgttcca taatgtatag
     3361 gttacaacat taaacaatat gaaatattgc tctaatattt tttgagtata tagttccttg
     3421 acttttctta cacatattac atatattctt aatttaacac ttggctgttc ataattctta
     3481 ctgttgatgg aggagtatct ttagaggtat caaagctaaa aattgcatta tgtaatattt
     3541 tactttttaa tttgtatcct gtattttggt ttcttgttga ggtaccaccg gccttgaatg
     3601 attcacacac gtacacacgt gtgcacacac ctattcccat cattgtataa gcaagatagt
     3661 tattgcttat gttaattttc ctgtttgggg ggctgaatgt tttaagctgt ggttttataa
     3721 acaaagctat aagtaaactt aattactttt ttatttgagg aggatattgt ttgaaatctg
     3781 ttttgaagaa ttgcactatt taataatgct gctagtacat gaatcaactc tgggaaattt
     3841 atttcatcag gtaagatgaa tggctttcca gaaggtgttt ttgcttttac acttcacctt
     3901 aaaaaaaaaa agaaattgcc catatttaag agcatatcaa cctcaaattc agtgcttgag
     3961 gttggttagt ttctggtcat ttcagaagct actaccttag taagaggctt tctatgtggc
     4021 ctttgactta agagacaaga atgaccaaat agactttcaa ggtaataggt atagaaaaaa
     4081 ccctctctat tataagggaa gaaacttgac ctttctaaag aaacagctct taaaaatgtt
     4141 tctgaccact gaagagtact tgaggcatat gttccaattt cagtttgcct tgaaattggg
     4201 ttaaaagcag ttttaaaaaa taaaagtaag taaattagtc cagagccttt taggataaaa
     4261 ccctatttaa cacttcttca tggtagtatt atcagaatat tgcctttgcc accgtgagtt
     4321 ctaccatcta cttgcctatg tgaattataa gaggaccttg aattaatcat gagaaaatgg
     4381 attttttttc ctcctgtttt ctggaagaaa aaagataagt gttcaggtga tttatatttg
     4441 atgatttttt tttctatttt ggtttcccta catctttgtt caactaaaag tctagttatt
     4501 tattcttgca ggattgtgat atgtttatta aatgtcaaaa tgaaattctt tttaaaaaga
     4561 aggcaagttt ttcatagtgt tatagtcagc tccaaagaac tttttccttc tcataaaaaa
     4621 tttttttatt tgtatatatt tattgtgatt ctattaattt gttgaattaa ctgacttcat
     4681 aaaaaatatt tacaaacttt ttcttgcctt aagatgtaat attttccact taaatgatta
     4741 tctagggagt gattatttgc attacaaaag aattctttag tttatctttc ctttaaacct
     4801 gtgagatagg aatgccaaag taacatttaa catacttctc tgtacctttc ctaattagaa
     4861 agtttaaatt atgttcataa cataatttgc ttttatttta atatgaacac atattaggaa
     4921 attatttgga atatatattt caaagtggtt gtaagaatta ggctgaatta aaaaatatat
     4981 atttttttgc ttggattaat caaatttaga aatacctctc tgtatgtgag acttaagaat
     5041 ttgtatagtc tgtgattaat ggaaataagg gcatcctttt tttgttccta atgattatat
     5101 tatgttattg ttttgcttag tttgagaaca accgtgtatt agctttactt ggctgatatc
     5161 agtaaatgtg tctatttcct atatgtaagg actgcactta ttaatttatg taaaagtgaa
     5221 acactacagt agcagaaaaa aatagcactg gctctttagc caaaataagc actgtaacat
     5281 ggctgtattt ctacttctgc caaataaaaa agtgatggta
//
LOCUS       XM_032651953            5362 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitoguardin 1 (MIGA1), transcript variant
            X2, mRNA.
ACCESSION   XM_032651953
VERSION     XM_032651953.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5362
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5362
                     /gene="MIGA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763852"
     CDS             139..1941
                     /gene="MIGA1"
                     /codon_start=1
                     /product="mitoguardin 1 isoform X1"
                     /protein_id="XP_032507844.1"
                     /db_xref="GeneID:116763852"
                     /translation="MSEETVSESQFSLRTAALRVFDLPLSWYYSLCQIRFSPVAKKLF
                     VVTAVSVVSVIFLARHFKRRRGKKKGKILPWEPEHLILEYTKRAASDKGSSCSSSRQN
                     LTLSLSSAKDKGSQSYNYANGGLFSKYSGSAQSLASVQSVNSCHSCACGNSNSWDKAD
                     EDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACSSIKLGAGDA
                     IAEESIDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLANDMDKDTDITMKG
                     NMDDFGLRDTLSVTSTDSFASAAELAEHKEVQHIYSLESLCHCPFYEEAMHLVEEGKI
                     YSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSETANRIFLAESGRKILSALIVKAR
                     KNPKKFEDVFDEMIYFLEQTDHWDSTEMELAARGVKNLNFYDVVLDFILMDSFEDLEN
                     PPTSIQNVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPV
                     LAWGFLGPRNSLYDLCCFFKNQVLFFLKDIFDFEKVRYSSIETLAEDLMQLLIRRTEL
                     LMAYLGADALRHTSSCISSHSHVMPSGLLEAKVQ"
     misc_feature    217..1851
                     /gene="MIGA1"
                     /note="Mitoguardin; Region: Miga; pfam10265"
                     /db_xref="CDD:463034"
ORIGIN      
        1 caagagcgcc agcctgcgac ctctggactc cgagtgcggg tggaagaaca gaaagccgga
       61 gggaggcccg cccgggaccg ctgaatcagg gtgggctggc gaccgcttgg agccggagcg
      121 aggattagaa gaggagtcat gtcagaagaa acagtaagtg aatcacagtt ttccctgagg
      181 acagcagcac taagagtgtt tgatcttcct ctgtcttggt actattctct ctgccagatc
      241 agattttcgc cagtagctaa aaagttattt gtggtaactg cagtgagtgt tgtatctgta
      301 atttttctgg cccgtcactt taaaagaaga cgtggaaaga agaaaggaaa aatattacca
      361 tgggaaccag agcatctcat acttgaatac actaaaagag cagcatcaga caaaggttca
      421 agttgttcca gtagcagaca gaatttgaca ctatctttaa gttctgccaa agacaaagga
      481 tctcagtctt ataattatgc taatggagga ctcttcagta aatactcagg ttctgcacag
      541 agtttggcct ctgtccagag tgtcaattct tgtcatagct gtgcttgtgg caattctaat
      601 tcctgggaca aagcagatga agatgatatt aaacttgtta atattcctgt gaccactcct
      661 gagaacctat acttgatggg tatggaattg tttgaagagg cattgcgtcg atgggaacaa
      721 gctctaacct ttcgaaatag acaggctgaa gacgaagcct gtagttccat taaattgggt
      781 gcgggagatg ccattgcaga agaaagtata gatgatatta ttagtactga atttatccat
      841 aaacttgaag ctctgctgca aagagcatat cgtctccaag aggagtttga agctacccta
      901 ggggcatctg atcctaattc ccttgctaat gatatggaca aagatacaga tatcaccatg
      961 aaggggaata tggatgactt tggcctgaga gacaccttga gtgtcacatc aaccgattct
     1021 tttgcttcag cagcagagct tgcagaacac aaagaagtac agcatatcta cagtctggag
     1081 tctctttgcc actgcccttt ttacgaagag gccatgcatt tagttgaaga aggaaaaatt
     1141 tactcaagag tgcttagaac tgaaatgttg gagtgcctag gagacagtga ttttcttgcc
     1201 aaacttcact gtattcgaca ggcttttcag gtaattcttt cagaaacagc caacaggata
     1261 ttccttgctg aaagtgggag gaaaatttta tcagcgttaa ttgtaaaagc acgaaagaat
     1321 ccgaagaagt ttgaagatgt ttttgatgaa atgatctatt ttttagagca gactgatcac
     1381 tgggatagta ctgaaatgga acttgctgct agaggagtga aaaatctaaa tttttatgat
     1441 gttgttttgg attttatatt aatggattcc tttgaagatt tagaaaaccc acccacatcc
     1501 atacagaacg tagtaaataa tcgctggcta aactcctcct tcaaagaaac cgctgtggct
     1561 tcaagttgtt ggtcagtgtt gaaacagaaa aggcaacaga tgaagatccc agatggattt
     1621 tttgcccatt tttatgccat ttgtgagcac atcagccctg tcctagcctg gggttttttg
     1681 ggtcctagaa attctctcta tgacttatgt tgcttcttta agaatcaagt tcttttcttt
     1741 ctcaaagaca tttttgattt tgagaaggtg cgctactcca gtatagagac tttggctgaa
     1801 gacctcatgc agttgcttat tcgccgcact gaacttttaa tggcctatct tggagccgac
     1861 gcactgaggc atacaagtag ctgtataagt agtcatagtc atgttatgcc cagtggccta
     1921 ttagaagcca aagtacaata agtaccataa aaatcagaca atttcagtgt gctatgaaat
     1981 attttaaggt aactattgat tttgtaacat atattacaca gaattggtgg atatggactc
     2041 agggagggaa aaaaaaccta gtaacgaatg agtgattgta ctgtacttac acagaagttc
     2101 tgtcattgaa tccccatgta gtgtatccaa agtgcttttt ttttttaatc tttaggtaat
     2161 aatctttgtg aaatgtatat tttacagaaa tactgcttga attgaaacca gtacttggga
     2221 gttaattgac ttgttgtctt gaagctgtct gaaatgtcca gtttcattct cagaagcttt
     2281 gtttttatgc tttgcacctg gaatatatat actttagcca agacttttat ggcccacaca
     2341 tgcaagaata tattactcct agtgtcaaca aagttaactt tgcctgaaaa tgtattttta
     2401 attgtaaagt tatttgttgt ttaatcaaat ttaggcagta gtggtgttta atacgtactg
     2461 cttacgttat tgcttgtgca tttgcttaag tatttgaatc aaagaaattg taatagccga
     2521 gtatcgttac agaacgttta aacgaattgc caccgagaag tttacaagtt tatattagat
     2581 ttactgaagt ttccaaaata cattacagtt ggtcctatgt tacaatagag agactgaaga
     2641 aatttctttt atcttggtat agattagaac atttcccttg aatgaatatt gattaaaaat
     2701 ataacactta ttaactatga caggcaatta aaatttttcc atgtagtttt gagaccatct
     2761 cccaacatcc tagggtatta atcttgatac agtaaaatca tttcttcttt ctccttatgc
     2821 aaaactggct tttagttgtt tctacagaga acttagcaca ctgagaattt gtcatattat
     2881 aaccatattt ttaagttatt cattgacact ttgaatctta gggagttctt gaaggttttt
     2941 cccccgaata tagaacaaaa tattttttaa tggtatggaa gtatgtttcc tgtcctttat
     3001 gatagatgta tgaacaagtg ggttgttcat atgaataagg ttcttcagag tatattagat
     3061 actttcagag ttgtattaat tttgtgtgta aatcatatgc cacttattta gagtggctgt
     3121 ctgagtaaaa caatagattg gatttgttga ttttgctcct aaagtgggct ttattcattt
     3181 taggagtgag ttatccagaa ggatctaaaa tatatttttt taaatgcatt tttaaagtgc
     3241 ctagtttccg atgaatgaat agaaaatgaa aagtggggaa agaagcataa tcttttaagg
     3301 ttttaagttt atatatgtgc caaatttatg taatattagt tacaaaatag gacattcaga
     3361 acctttatgc tgtttgcatg tactgtgttc cataatgtat aggttacaac attaaacaat
     3421 atgaaatatt gctctaatat tttttgagta tatagttcct tgacttttct tacacatatt
     3481 acatatattc ttaatttaac acttggctgt tcataattct tactgttgat ggaggagtat
     3541 ctttagaggt atcaaagcta aaaattgcat tatgtaatat tttacttttt aatttgtatc
     3601 ctgtattttg gtttcttgtt gaggtaccac cggccttgaa tgattcacac acgtacacac
     3661 gtgtgcacac acctattccc atcattgtat aagcaagata gttattgctt atgttaattt
     3721 tcctgtttgg ggggctgaat gttttaagct gtggttttat aaacaaagct ataagtaaac
     3781 ttaattactt ttttatttga ggaggatatt gtttgaaatc tgttttgaag aattgcacta
     3841 tttaataatg ctgctagtac atgaatcaac tctgggaaat ttatttcatc aggtaagatg
     3901 aatggctttc cagaaggtgt ttttgctttt acacttcacc ttaaaaaaaa aaagaaattg
     3961 cccatattta agagcatatc aacctcaaat tcagtgcttg aggttggtta gtttctggtc
     4021 atttcagaag ctactacctt agtaagaggc tttctatgtg gcctttgact taagagacaa
     4081 gaatgaccaa atagactttc aaggtaatag gtatagaaaa aaccctctct attataaggg
     4141 aagaaacttg acctttctaa agaaacagct cttaaaaatg tttctgacca ctgaagagta
     4201 cttgaggcat atgttccaat ttcagtttgc cttgaaattg ggttaaaagc agttttaaaa
     4261 aataaaagta agtaaattag tccagagcct tttaggataa aaccctattt aacacttctt
     4321 catggtagta ttatcagaat attgcctttg ccaccgtgag ttctaccatc tacttgccta
     4381 tgtgaattat aagaggacct tgaattaatc atgagaaaat ggattttttt tcctcctgtt
     4441 ttctggaaga aaaaagataa gtgttcaggt gatttatatt tgatgatttt tttttctatt
     4501 ttggtttccc tacatctttg ttcaactaaa agtctagtta tttattcttg caggattgtg
     4561 atatgtttat taaatgtcaa aatgaaattc tttttaaaaa gaaggcaagt ttttcatagt
     4621 gttatagtca gctccaaaga actttttcct tctcataaaa aattttttta tttgtatata
     4681 tttattgtga ttctattaat ttgttgaatt aactgacttc ataaaaaata tttacaaact
     4741 ttttcttgcc ttaagatgta atattttcca cttaaatgat tatctaggga gtgattattt
     4801 gcattacaaa agaattcttt agtttatctt tcctttaaac ctgtgagata ggaatgccaa
     4861 agtaacattt aacatacttc tctgtacctt tcctaattag aaagtttaaa ttatgttcat
     4921 aacataattt gcttttattt taatatgaac acatattagg aaattatttg gaatatatat
     4981 ttcaaagtgg ttgtaagaat taggctgaat taaaaaatat atattttttt gcttggatta
     5041 atcaaattta gaaatacctc tctgtatgtg agacttaaga atttgtatag tctgtgatta
     5101 atggaaataa gggcatcctt tttttgttcc taatgattat attatgttat tgttttgctt
     5161 agtttgagaa caaccgtgta ttagctttac ttggctgata tcagtaaatg tgtctatttc
     5221 ctatatgtaa ggactgcact tattaattta tgtaaaagtg aaacactaca gtagcagaaa
     5281 aaaatagcac tggctcttta gccaaaataa gcactgtaac atggctgtat ttctacttct
     5341 gccaaataaa aaagtgatgg ta
//
LOCUS       XM_032651962            5121 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitoguardin 1 (MIGA1), transcript variant
            X3, mRNA.
ACCESSION   XM_032651962
VERSION     XM_032651962.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5121
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5121
                     /gene="MIGA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763852"
     CDS             97..1899
                     /gene="MIGA1"
                     /codon_start=1
                     /product="mitoguardin 1 isoform X1"
                     /protein_id="XP_032507853.1"
                     /db_xref="GeneID:116763852"
                     /translation="MSEETVSESQFSLRTAALRVFDLPLSWYYSLCQIRFSPVAKKLF
                     VVTAVSVVSVIFLARHFKRRRGKKKGKILPWEPEHLILEYTKRAASDKGSSCSSSRQN
                     LTLSLSSAKDKGSQSYNYANGGLFSKYSGSAQSLASVQSVNSCHSCACGNSNSWDKAD
                     EDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACSSIKLGAGDA
                     IAEESIDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLANDMDKDTDITMKG
                     NMDDFGLRDTLSVTSTDSFASAAELAEHKEVQHIYSLESLCHCPFYEEAMHLVEEGKI
                     YSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSETANRIFLAESGRKILSALIVKAR
                     KNPKKFEDVFDEMIYFLEQTDHWDSTEMELAARGVKNLNFYDVVLDFILMDSFEDLEN
                     PPTSIQNVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPV
                     LAWGFLGPRNSLYDLCCFFKNQVLFFLKDIFDFEKVRYSSIETLAEDLMQLLIRRTEL
                     LMAYLGADALRHTSSCISSHSHVMPSGLLEAKVQ"
     misc_feature    175..1809
                     /gene="MIGA1"
                     /note="Mitoguardin; Region: Miga; pfam10265"
                     /db_xref="CDD:463034"
ORIGIN      
        1 acttcgcccc cggggtcggc ctgcggctcg ctgcggcggg gaagtaggcg tgggcaggct
       61 acacttaccc tggagcgcca gattagaaga ggagtcatgt cagaagaaac agtaagtgaa
      121 tcacagtttt ccctgaggac agcagcacta agagtgtttg atcttcctct gtcttggtac
      181 tattctctct gccagatcag attttcgcca gtagctaaaa agttatttgt ggtaactgca
      241 gtgagtgttg tatctgtaat ttttctggcc cgtcacttta aaagaagacg tggaaagaag
      301 aaaggaaaaa tattaccatg ggaaccagag catctcatac ttgaatacac taaaagagca
      361 gcatcagaca aaggttcaag ttgttccagt agcagacaga atttgacact atctttaagt
      421 tctgccaaag acaaaggatc tcagtcttat aattatgcta atggaggact cttcagtaaa
      481 tactcaggtt ctgcacagag tttggcctct gtccagagtg tcaattcttg tcatagctgt
      541 gcttgtggca attctaattc ctgggacaaa gcagatgaag atgatattaa acttgttaat
      601 attcctgtga ccactcctga gaacctatac ttgatgggta tggaattgtt tgaagaggca
      661 ttgcgtcgat gggaacaagc tctaaccttt cgaaatagac aggctgaaga cgaagcctgt
      721 agttccatta aattgggtgc gggagatgcc attgcagaag aaagtataga tgatattatt
      781 agtactgaat ttatccataa acttgaagct ctgctgcaaa gagcatatcg tctccaagag
      841 gagtttgaag ctaccctagg ggcatctgat cctaattccc ttgctaatga tatggacaaa
      901 gatacagata tcaccatgaa ggggaatatg gatgactttg gcctgagaga caccttgagt
      961 gtcacatcaa ccgattcttt tgcttcagca gcagagcttg cagaacacaa agaagtacag
     1021 catatctaca gtctggagtc tctttgccac tgcccttttt acgaagaggc catgcattta
     1081 gttgaagaag gaaaaattta ctcaagagtg cttagaactg aaatgttgga gtgcctagga
     1141 gacagtgatt ttcttgccaa acttcactgt attcgacagg cttttcaggt aattctttca
     1201 gaaacagcca acaggatatt ccttgctgaa agtgggagga aaattttatc agcgttaatt
     1261 gtaaaagcac gaaagaatcc gaagaagttt gaagatgttt ttgatgaaat gatctatttt
     1321 ttagagcaga ctgatcactg ggatagtact gaaatggaac ttgctgctag aggagtgaaa
     1381 aatctaaatt tttatgatgt tgttttggat tttatattaa tggattcctt tgaagattta
     1441 gaaaacccac ccacatccat acagaacgta gtaaataatc gctggctaaa ctcctccttc
     1501 aaagaaaccg ctgtggcttc aagttgttgg tcagtgttga aacagaaaag gcaacagatg
     1561 aagatcccag atggattttt tgcccatttt tatgccattt gtgagcacat cagccctgtc
     1621 ctagcctggg gttttttggg tcctagaaat tctctctatg acttatgttg cttctttaag
     1681 aatcaagttc ttttctttct caaagacatt tttgattttg agaaggtgcg ctactccagt
     1741 atagagactt tggctgaaga cctcatgcag ttgcttattc gccgcactga acttttaatg
     1801 gcctatcttg gagccgacgc actgaggcat acaagtagct gtataagtag tcatagtcat
     1861 gttatgccca gtggcctatt agaagccaaa gtacaataag taccataaaa atcagacaat
     1921 ttcagtgtgc tatgaaatat tttaagaaat actgcttgaa ttgaaaccag tacttgggag
     1981 ttaattgact tgttgtcttg aagctgtctg aaatgtccag tttcattctc agaagctttg
     2041 tttttatgct ttgcacctgg aatatatata ctttagccaa gacttttatg gcccacacat
     2101 gcaagaatat attactccta gtgtcaacaa agttaacttt gcctgaaaat gtatttttaa
     2161 ttgtaaagtt atttgttgtt taatcaaatt taggcagtag tggtgtttaa tacgtactgc
     2221 ttacgttatt gcttgtgcat ttgcttaagt atttgaatca aagaaattgt aatagccgag
     2281 tatcgttaca gaacgtttaa acgaattgcc accgagaagt ttacaagttt atattagatt
     2341 tactgaagtt tccaaaatac attacagttg gtcctatgtt acaatagaga gactgaagaa
     2401 atttctttta tcttggtata gattagaaca tttcccttga atgaatattg attaaaaata
     2461 taacacttat taactatgac aggcaattaa aatttttcca tgtagttttg agaccatctc
     2521 ccaacatcct agggtattaa tcttgataca gtaaaatcat ttcttctttc tccttatgca
     2581 aaactggctt ttagttgttt ctacagagaa cttagcacac tgagaatttg tcatattata
     2641 accatatttt taagttattc attgacactt tgaatcttag ggagttcttg aaggtttttc
     2701 ccccgaatat agaacaaaat attttttaat ggtatggaag tatgtttcct gtcctttatg
     2761 atagatgtat gaacaagtgg gttgttcata tgaataaggt tcttcagagt atattagata
     2821 ctttcagagt tgtattaatt ttgtgtgtaa atcatatgcc acttatttag agtggctgtc
     2881 tgagtaaaac aatagattgg atttgttgat tttgctccta aagtgggctt tattcatttt
     2941 aggagtgagt tatccagaag gatctaaaat atattttttt aaatgcattt ttaaagtgcc
     3001 tagtttccga tgaatgaata gaaaatgaaa agtggggaaa gaagcataat cttttaaggt
     3061 tttaagttta tatatgtgcc aaatttatgt aatattagtt acaaaatagg acattcagaa
     3121 cctttatgct gtttgcatgt actgtgttcc ataatgtata ggttacaaca ttaaacaata
     3181 tgaaatattg ctctaatatt ttttgagtat atagttcctt gacttttctt acacatatta
     3241 catatattct taatttaaca cttggctgtt cataattctt actgttgatg gaggagtatc
     3301 tttagaggta tcaaagctaa aaattgcatt atgtaatatt ttacttttta atttgtatcc
     3361 tgtattttgg tttcttgttg aggtaccacc ggccttgaat gattcacaca cgtacacacg
     3421 tgtgcacaca cctattccca tcattgtata agcaagatag ttattgctta tgttaatttt
     3481 cctgtttggg gggctgaatg ttttaagctg tggttttata aacaaagcta taagtaaact
     3541 taattacttt tttatttgag gaggatattg tttgaaatct gttttgaaga attgcactat
     3601 ttaataatgc tgctagtaca tgaatcaact ctgggaaatt tatttcatca ggtaagatga
     3661 atggctttcc agaaggtgtt tttgctttta cacttcacct taaaaaaaaa aagaaattgc
     3721 ccatatttaa gagcatatca acctcaaatt cagtgcttga ggttggttag tttctggtca
     3781 tttcagaagc tactacctta gtaagaggct ttctatgtgg cctttgactt aagagacaag
     3841 aatgaccaaa tagactttca aggtaatagg tatagaaaaa accctctcta ttataaggga
     3901 agaaacttga cctttctaaa gaaacagctc ttaaaaatgt ttctgaccac tgaagagtac
     3961 ttgaggcata tgttccaatt tcagtttgcc ttgaaattgg gttaaaagca gttttaaaaa
     4021 ataaaagtaa gtaaattagt ccagagcctt ttaggataaa accctattta acacttcttc
     4081 atggtagtat tatcagaata ttgcctttgc caccgtgagt tctaccatct acttgcctat
     4141 gtgaattata agaggacctt gaattaatca tgagaaaatg gatttttttt cctcctgttt
     4201 tctggaagaa aaaagataag tgttcaggtg atttatattt gatgattttt ttttctattt
     4261 tggtttccct acatctttgt tcaactaaaa gtctagttat ttattcttgc aggattgtga
     4321 tatgtttatt aaatgtcaaa atgaaattct ttttaaaaag aaggcaagtt tttcatagtg
     4381 ttatagtcag ctccaaagaa ctttttcctt ctcataaaaa atttttttat ttgtatatat
     4441 ttattgtgat tctattaatt tgttgaatta actgacttca taaaaaatat ttacaaactt
     4501 tttcttgcct taagatgtaa tattttccac ttaaatgatt atctagggag tgattatttg
     4561 cattacaaaa gaattcttta gtttatcttt cctttaaacc tgtgagatag gaatgccaaa
     4621 gtaacattta acatacttct ctgtaccttt cctaattaga aagtttaaat tatgttcata
     4681 acataatttg cttttatttt aatatgaaca catattagga aattatttgg aatatatatt
     4741 tcaaagtggt tgtaagaatt aggctgaatt aaaaaatata tatttttttg cttggattaa
     4801 tcaaatttag aaatacctct ctgtatgtga gacttaagaa tttgtatagt ctgtgattaa
     4861 tggaaataag ggcatccttt ttttgttcct aatgattata ttatgttatt gttttgctta
     4921 gtttgagaac aaccgtgtat tagctttact tggctgatat cagtaaatgt gtctatttcc
     4981 tatatgtaag gactgcactt attaatttat gtaaaagtga aacactacag tagcagaaaa
     5041 aaatagcact ggctctttag ccaaaataag cactgtaaca tggctgtatt tctacttctg
     5101 ccaaataaaa aagtgatggt a
//
LOCUS       XM_032651971            5049 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitoguardin 1 (MIGA1), transcript variant
            X4, mRNA.
ACCESSION   XM_032651971
VERSION     XM_032651971.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5049
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5049
                     /gene="MIGA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763852"
     CDS             109..1827
                     /gene="MIGA1"
                     /codon_start=1
                     /product="mitoguardin 1 isoform X2"
                     /protein_id="XP_032507862.1"
                     /db_xref="GeneID:116763852"
                     /translation="MSEETIRFSPVAKKLFVVTAVSVVSVIFLARHFKRRRGKKKGKI
                     LPWEPEHLILEYTKRAASDKGSSCSSSRQNLTLSLSSAKDKGSQSYNYANGGLFSKYS
                     GSAQSLASVQSVNSCHSCACGNSNSWDKADEDDIKLVNIPVTTPENLYLMGMELFEEA
                     LRRWEQALTFRNRQAEDEACSSIKLGAGDAIAEESIDDIISTEFIHKLEALLQRAYRL
                     QEEFEATLGASDPNSLANDMDKDTDITMKGNMDDFGLRDTLSVTSTDSFASAAELAEH
                     KEVQHIYSLESLCHCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQA
                     FQVILSETANRIFLAESGRKILSALIVKARKNPKKFEDVFDEMIYFLEQTDHWDSTEM
                     ELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQNVVNNRWLNSSFKETAVASSCW
                     SVLKQKRQQMKIPDGFFAHFYAICEHISPVLAWGFLGPRNSLYDLCCFFKNQVLFFLK
                     DIFDFEKVRYSSIETLAEDLMQLLIRRTELLMAYLGADALRHTSSCISSHSHVMPSGL
                     LEAKVQ"
     misc_feature    124..1737
                     /gene="MIGA1"
                     /note="Mitoguardin; Region: Miga; pfam10265"
                     /db_xref="CDD:463034"
ORIGIN      
        1 gaccccggaa ggacttcgcc cccggggtcg gcctgcggct cgctgcggcg gggaagtagg
       61 cgtgggcagg ctacacttac cctggagcgc cagattagaa gaggagtcat gtcagaagaa
      121 acaatcagat tttcgccagt agctaaaaag ttatttgtgg taactgcagt gagtgttgta
      181 tctgtaattt ttctggcccg tcactttaaa agaagacgtg gaaagaagaa aggaaaaata
      241 ttaccatggg aaccagagca tctcatactt gaatacacta aaagagcagc atcagacaaa
      301 ggttcaagtt gttccagtag cagacagaat ttgacactat ctttaagttc tgccaaagac
      361 aaaggatctc agtcttataa ttatgctaat ggaggactct tcagtaaata ctcaggttct
      421 gcacagagtt tggcctctgt ccagagtgtc aattcttgtc atagctgtgc ttgtggcaat
      481 tctaattcct gggacaaagc agatgaagat gatattaaac ttgttaatat tcctgtgacc
      541 actcctgaga acctatactt gatgggtatg gaattgtttg aagaggcatt gcgtcgatgg
      601 gaacaagctc taacctttcg aaatagacag gctgaagacg aagcctgtag ttccattaaa
      661 ttgggtgcgg gagatgccat tgcagaagaa agtatagatg atattattag tactgaattt
      721 atccataaac ttgaagctct gctgcaaaga gcatatcgtc tccaagagga gtttgaagct
      781 accctagggg catctgatcc taattccctt gctaatgata tggacaaaga tacagatatc
      841 accatgaagg ggaatatgga tgactttggc ctgagagaca ccttgagtgt cacatcaacc
      901 gattcttttg cttcagcagc agagcttgca gaacacaaag aagtacagca tatctacagt
      961 ctggagtctc tttgccactg ccctttttac gaagaggcca tgcatttagt tgaagaagga
     1021 aaaatttact caagagtgct tagaactgaa atgttggagt gcctaggaga cagtgatttt
     1081 cttgccaaac ttcactgtat tcgacaggct tttcaggtaa ttctttcaga aacagccaac
     1141 aggatattcc ttgctgaaag tgggaggaaa attttatcag cgttaattgt aaaagcacga
     1201 aagaatccga agaagtttga agatgttttt gatgaaatga tctatttttt agagcagact
     1261 gatcactggg atagtactga aatggaactt gctgctagag gagtgaaaaa tctaaatttt
     1321 tatgatgttg ttttggattt tatattaatg gattcctttg aagatttaga aaacccaccc
     1381 acatccatac agaacgtagt aaataatcgc tggctaaact cctccttcaa agaaaccgct
     1441 gtggcttcaa gttgttggtc agtgttgaaa cagaaaaggc aacagatgaa gatcccagat
     1501 ggattttttg cccattttta tgccatttgt gagcacatca gccctgtcct agcctggggt
     1561 tttttgggtc ctagaaattc tctctatgac ttatgttgct tctttaagaa tcaagttctt
     1621 ttctttctca aagacatttt tgattttgag aaggtgcgct actccagtat agagactttg
     1681 gctgaagacc tcatgcagtt gcttattcgc cgcactgaac ttttaatggc ctatcttgga
     1741 gccgacgcac tgaggcatac aagtagctgt ataagtagtc atagtcatgt tatgcccagt
     1801 ggcctattag aagccaaagt acaataagta ccataaaaat cagacaattt cagtgtgcta
     1861 tgaaatattt taagaaatac tgcttgaatt gaaaccagta cttgggagtt aattgacttg
     1921 ttgtcttgaa gctgtctgaa atgtccagtt tcattctcag aagctttgtt tttatgcttt
     1981 gcacctggaa tatatatact ttagccaaga cttttatggc ccacacatgc aagaatatat
     2041 tactcctagt gtcaacaaag ttaactttgc ctgaaaatgt atttttaatt gtaaagttat
     2101 ttgttgttta atcaaattta ggcagtagtg gtgtttaata cgtactgctt acgttattgc
     2161 ttgtgcattt gcttaagtat ttgaatcaaa gaaattgtaa tagccgagta tcgttacaga
     2221 acgtttaaac gaattgccac cgagaagttt acaagtttat attagattta ctgaagtttc
     2281 caaaatacat tacagttggt cctatgttac aatagagaga ctgaagaaat ttcttttatc
     2341 ttggtataga ttagaacatt tcccttgaat gaatattgat taaaaatata acacttatta
     2401 actatgacag gcaattaaaa tttttccatg tagttttgag accatctccc aacatcctag
     2461 ggtattaatc ttgatacagt aaaatcattt cttctttctc cttatgcaaa actggctttt
     2521 agttgtttct acagagaact tagcacactg agaatttgtc atattataac catattttta
     2581 agttattcat tgacactttg aatcttaggg agttcttgaa ggtttttccc ccgaatatag
     2641 aacaaaatat tttttaatgg tatggaagta tgtttcctgt cctttatgat agatgtatga
     2701 acaagtgggt tgttcatatg aataaggttc ttcagagtat attagatact ttcagagttg
     2761 tattaatttt gtgtgtaaat catatgccac ttatttagag tggctgtctg agtaaaacaa
     2821 tagattggat ttgttgattt tgctcctaaa gtgggcttta ttcattttag gagtgagtta
     2881 tccagaagga tctaaaatat atttttttaa atgcattttt aaagtgccta gtttccgatg
     2941 aatgaataga aaatgaaaag tggggaaaga agcataatct tttaaggttt taagtttata
     3001 tatgtgccaa atttatgtaa tattagttac aaaataggac attcagaacc tttatgctgt
     3061 ttgcatgtac tgtgttccat aatgtatagg ttacaacatt aaacaatatg aaatattgct
     3121 ctaatatttt ttgagtatat agttccttga cttttcttac acatattaca tatattctta
     3181 atttaacact tggctgttca taattcttac tgttgatgga ggagtatctt tagaggtatc
     3241 aaagctaaaa attgcattat gtaatatttt actttttaat ttgtatcctg tattttggtt
     3301 tcttgttgag gtaccaccgg ccttgaatga ttcacacacg tacacacgtg tgcacacacc
     3361 tattcccatc attgtataag caagatagtt attgcttatg ttaattttcc tgtttggggg
     3421 gctgaatgtt ttaagctgtg gttttataaa caaagctata agtaaactta attacttttt
     3481 tatttgagga ggatattgtt tgaaatctgt tttgaagaat tgcactattt aataatgctg
     3541 ctagtacatg aatcaactct gggaaattta tttcatcagg taagatgaat ggctttccag
     3601 aaggtgtttt tgcttttaca cttcacctta aaaaaaaaaa gaaattgccc atatttaaga
     3661 gcatatcaac ctcaaattca gtgcttgagg ttggttagtt tctggtcatt tcagaagcta
     3721 ctaccttagt aagaggcttt ctatgtggcc tttgacttaa gagacaagaa tgaccaaata
     3781 gactttcaag gtaataggta tagaaaaaac cctctctatt ataagggaag aaacttgacc
     3841 tttctaaaga aacagctctt aaaaatgttt ctgaccactg aagagtactt gaggcatatg
     3901 ttccaatttc agtttgcctt gaaattgggt taaaagcagt tttaaaaaat aaaagtaagt
     3961 aaattagtcc agagcctttt aggataaaac cctatttaac acttcttcat ggtagtatta
     4021 tcagaatatt gcctttgcca ccgtgagttc taccatctac ttgcctatgt gaattataag
     4081 aggaccttga attaatcatg agaaaatgga ttttttttcc tcctgttttc tggaagaaaa
     4141 aagataagtg ttcaggtgat ttatatttga tgattttttt ttctattttg gtttccctac
     4201 atctttgttc aactaaaagt ctagttattt attcttgcag gattgtgata tgtttattaa
     4261 atgtcaaaat gaaattcttt ttaaaaagaa ggcaagtttt tcatagtgtt atagtcagct
     4321 ccaaagaact ttttccttct cataaaaaat ttttttattt gtatatattt attgtgattc
     4381 tattaatttg ttgaattaac tgacttcata aaaaatattt acaaactttt tcttgcctta
     4441 agatgtaata ttttccactt aaatgattat ctagggagtg attatttgca ttacaaaaga
     4501 attctttagt ttatctttcc tttaaacctg tgagatagga atgccaaagt aacatttaac
     4561 atacttctct gtacctttcc taattagaaa gtttaaatta tgttcataac ataatttgct
     4621 tttattttaa tatgaacaca tattaggaaa ttatttggaa tatatatttc aaagtggttg
     4681 taagaattag gctgaattaa aaaatatata tttttttgct tggattaatc aaatttagaa
     4741 atacctctct gtatgtgaga cttaagaatt tgtatagtct gtgattaatg gaaataaggg
     4801 catccttttt ttgttcctaa tgattatatt atgttattgt tttgcttagt ttgagaacaa
     4861 ccgtgtatta gctttacttg gctgatatca gtaaatgtgt ctatttccta tatgtaagga
     4921 ctgcacttat taatttatgt aaaagtgaaa cactacagta gcagaaaaaa atagcactgg
     4981 ctctttagcc aaaataagca ctgtaacatg gctgtatttc tacttctgcc aaataaaaaa
     5041 gtgatggta
//
LOCUS       XM_032651978            5128 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitoguardin 1 (MIGA1), transcript variant
            X5, mRNA.
ACCESSION   XM_032651978
VERSION     XM_032651978.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5128
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5128
                     /gene="MIGA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763852"
     CDS             97..1707
                     /gene="MIGA1"
                     /codon_start=1
                     /product="mitoguardin 1 isoform X3"
                     /protein_id="XP_032507869.1"
                     /db_xref="GeneID:116763852"
                     /translation="MSEETVSESQFSLRTAALRVFDLPLSWYYSLCQIRFSPVAKKLF
                     VVTAVSVVSVIFLARHFKRRRGKKKGKILPWEPEHLILEYTKRAASDKGSSCSSSRQN
                     LTLSLSSAKDKGSQSYNYANGGLFSKYSGSAQSLASVQSVNSCHSCACGNSNSWDKAD
                     EDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACSSIKLGAGDA
                     IAEESIDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLANDMDKDTDITMKG
                     NMDDFGLRDTLSVTSTDSFASAAEVILSETANRIFLAESGRKILSALIVKARKNPKKF
                     EDVFDEMIYFLEQTDHWDSTEMELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQ
                     NVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPVLAWGFL
                     GPRNSLYDLCCFFKNQVLFFLKDIFDFEKVRYSSIETLAEDLMQLLIRRTELLMAYLG
                     ADALRHTSSCISSHSHVMPSGLLEAKVQ"
     misc_feature    175..1617
                     /gene="MIGA1"
                     /note="Mitoguardin; Region: Miga; pfam10265"
                     /db_xref="CDD:463034"
ORIGIN      
        1 acttcgcccc cggggtcggc ctgcggctcg ctgcggcggg gaagtaggcg tgggcaggct
       61 acacttaccc tggagcgcca gattagaaga ggagtcatgt cagaagaaac agtaagtgaa
      121 tcacagtttt ccctgaggac agcagcacta agagtgtttg atcttcctct gtcttggtac
      181 tattctctct gccagatcag attttcgcca gtagctaaaa agttatttgt ggtaactgca
      241 gtgagtgttg tatctgtaat ttttctggcc cgtcacttta aaagaagacg tggaaagaag
      301 aaaggaaaaa tattaccatg ggaaccagag catctcatac ttgaatacac taaaagagca
      361 gcatcagaca aaggttcaag ttgttccagt agcagacaga atttgacact atctttaagt
      421 tctgccaaag acaaaggatc tcagtcttat aattatgcta atggaggact cttcagtaaa
      481 tactcaggtt ctgcacagag tttggcctct gtccagagtg tcaattcttg tcatagctgt
      541 gcttgtggca attctaattc ctgggacaaa gcagatgaag atgatattaa acttgttaat
      601 attcctgtga ccactcctga gaacctatac ttgatgggta tggaattgtt tgaagaggca
      661 ttgcgtcgat gggaacaagc tctaaccttt cgaaatagac aggctgaaga cgaagcctgt
      721 agttccatta aattgggtgc gggagatgcc attgcagaag aaagtataga tgatattatt
      781 agtactgaat ttatccataa acttgaagct ctgctgcaaa gagcatatcg tctccaagag
      841 gagtttgaag ctaccctagg ggcatctgat cctaattccc ttgctaatga tatggacaaa
      901 gatacagata tcaccatgaa ggggaatatg gatgactttg gcctgagaga caccttgagt
      961 gtcacatcaa ccgattcttt tgcttcagca gcagaggtaa ttctttcaga aacagccaac
     1021 aggatattcc ttgctgaaag tgggaggaaa attttatcag cgttaattgt aaaagcacga
     1081 aagaatccga agaagtttga agatgttttt gatgaaatga tctatttttt agagcagact
     1141 gatcactggg atagtactga aatggaactt gctgctagag gagtgaaaaa tctaaatttt
     1201 tatgatgttg ttttggattt tatattaatg gattcctttg aagatttaga aaacccaccc
     1261 acatccatac agaacgtagt aaataatcgc tggctaaact cctccttcaa agaaaccgct
     1321 gtggcttcaa gttgttggtc agtgttgaaa cagaaaaggc aacagatgaa gatcccagat
     1381 ggattttttg cccattttta tgccatttgt gagcacatca gccctgtcct agcctggggt
     1441 tttttgggtc ctagaaattc tctctatgac ttatgttgct tctttaagaa tcaagttctt
     1501 ttctttctca aagacatttt tgattttgag aaggtgcgct actccagtat agagactttg
     1561 gctgaagacc tcatgcagtt gcttattcgc cgcactgaac ttttaatggc ctatcttgga
     1621 gccgacgcac tgaggcatac aagtagctgt ataagtagtc atagtcatgt tatgcccagt
     1681 ggcctattag aagccaaagt acaataagta ccataaaaat cagacaattt cagtgtgcta
     1741 tgaaatattt taaggtaact attgattttg taacatatat tacacagaat tggtggatat
     1801 ggactcaggg agggaaaaaa aacctagtaa cgaatgagtg attgtactgt acttacacag
     1861 aagttctgtc attgaatccc catgtagtgt atccaaagtg cttttttttt ttaatcttta
     1921 ggtaataatc tttgtgaaat gtatatttta cagaaatact gcttgaattg aaaccagtac
     1981 ttgggagtta attgacttgt tgtcttgaag ctgtctgaaa tgtccagttt cattctcaga
     2041 agctttgttt ttatgctttg cacctggaat atatatactt tagccaagac ttttatggcc
     2101 cacacatgca agaatatatt actcctagtg tcaacaaagt taactttgcc tgaaaatgta
     2161 tttttaattg taaagttatt tgttgtttaa tcaaatttag gcagtagtgg tgtttaatac
     2221 gtactgctta cgttattgct tgtgcatttg cttaagtatt tgaatcaaag aaattgtaat
     2281 agccgagtat cgttacagaa cgtttaaacg aattgccacc gagaagttta caagtttata
     2341 ttagatttac tgaagtttcc aaaatacatt acagttggtc ctatgttaca atagagagac
     2401 tgaagaaatt tcttttatct tggtatagat tagaacattt cccttgaatg aatattgatt
     2461 aaaaatataa cacttattaa ctatgacagg caattaaaat ttttccatgt agttttgaga
     2521 ccatctccca acatcctagg gtattaatct tgatacagta aaatcatttc ttctttctcc
     2581 ttatgcaaaa ctggctttta gttgtttcta cagagaactt agcacactga gaatttgtca
     2641 tattataacc atatttttaa gttattcatt gacactttga atcttaggga gttcttgaag
     2701 gtttttcccc cgaatataga acaaaatatt ttttaatggt atggaagtat gtttcctgtc
     2761 ctttatgata gatgtatgaa caagtgggtt gttcatatga ataaggttct tcagagtata
     2821 ttagatactt tcagagttgt attaattttg tgtgtaaatc atatgccact tatttagagt
     2881 ggctgtctga gtaaaacaat agattggatt tgttgatttt gctcctaaag tgggctttat
     2941 tcattttagg agtgagttat ccagaaggat ctaaaatata tttttttaaa tgcattttta
     3001 aagtgcctag tttccgatga atgaatagaa aatgaaaagt ggggaaagaa gcataatctt
     3061 ttaaggtttt aagtttatat atgtgccaaa tttatgtaat attagttaca aaataggaca
     3121 ttcagaacct ttatgctgtt tgcatgtact gtgttccata atgtataggt tacaacatta
     3181 aacaatatga aatattgctc taatattttt tgagtatata gttccttgac ttttcttaca
     3241 catattacat atattcttaa tttaacactt ggctgttcat aattcttact gttgatggag
     3301 gagtatcttt agaggtatca aagctaaaaa ttgcattatg taatatttta ctttttaatt
     3361 tgtatcctgt attttggttt cttgttgagg taccaccggc cttgaatgat tcacacacgt
     3421 acacacgtgt gcacacacct attcccatca ttgtataagc aagatagtta ttgcttatgt
     3481 taattttcct gtttgggggg ctgaatgttt taagctgtgg ttttataaac aaagctataa
     3541 gtaaacttaa ttactttttt atttgaggag gatattgttt gaaatctgtt ttgaagaatt
     3601 gcactattta ataatgctgc tagtacatga atcaactctg ggaaatttat ttcatcaggt
     3661 aagatgaatg gctttccaga aggtgttttt gcttttacac ttcaccttaa aaaaaaaaag
     3721 aaattgccca tatttaagag catatcaacc tcaaattcag tgcttgaggt tggttagttt
     3781 ctggtcattt cagaagctac taccttagta agaggctttc tatgtggcct ttgacttaag
     3841 agacaagaat gaccaaatag actttcaagg taataggtat agaaaaaacc ctctctatta
     3901 taagggaaga aacttgacct ttctaaagaa acagctctta aaaatgtttc tgaccactga
     3961 agagtacttg aggcatatgt tccaatttca gtttgccttg aaattgggtt aaaagcagtt
     4021 ttaaaaaata aaagtaagta aattagtcca gagcctttta ggataaaacc ctatttaaca
     4081 cttcttcatg gtagtattat cagaatattg cctttgccac cgtgagttct accatctact
     4141 tgcctatgtg aattataaga ggaccttgaa ttaatcatga gaaaatggat tttttttcct
     4201 cctgttttct ggaagaaaaa agataagtgt tcaggtgatt tatatttgat gatttttttt
     4261 tctattttgg tttccctaca tctttgttca actaaaagtc tagttattta ttcttgcagg
     4321 attgtgatat gtttattaaa tgtcaaaatg aaattctttt taaaaagaag gcaagttttt
     4381 catagtgtta tagtcagctc caaagaactt tttccttctc ataaaaaatt tttttatttg
     4441 tatatattta ttgtgattct attaatttgt tgaattaact gacttcataa aaaatattta
     4501 caaacttttt cttgccttaa gatgtaatat tttccactta aatgattatc tagggagtga
     4561 ttatttgcat tacaaaagaa ttctttagtt tatctttcct ttaaacctgt gagataggaa
     4621 tgccaaagta acatttaaca tacttctctg tacctttcct aattagaaag tttaaattat
     4681 gttcataaca taatttgctt ttattttaat atgaacacat attaggaaat tatttggaat
     4741 atatatttca aagtggttgt aagaattagg ctgaattaaa aaatatatat ttttttgctt
     4801 ggattaatca aatttagaaa tacctctctg tatgtgagac ttaagaattt gtatagtctg
     4861 tgattaatgg aaataagggc atcctttttt tgttcctaat gattatatta tgttattgtt
     4921 ttgcttagtt tgagaacaac cgtgtattag ctttacttgg ctgatatcag taaatgtgtc
     4981 tatttcctat atgtaaggac tgcacttatt aatttatgta aaagtgaaac actacagtag
     5041 cagaaaaaaa tagcactggc tctttagcca aaataagcac tgtaacatgg ctgtatttct
     5101 acttctgcca aataaaaaag tgatggta
//
LOCUS       XM_032652003            1882 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gamma-aminobutyric acid type A receptor
            subunit delta (GABRD), mRNA.
ACCESSION   XM_032652003
VERSION     XM_032652003.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1882
                     /gene="GABRD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 11 Proteins"
                     /db_xref="GeneID:116763887"
     CDS             144..1487
                     /gene="GABRD"
                     /codon_start=1
                     /product="gamma-aminobutyric acid receptor subunit delta"
                     /protein_id="XP_032507894.1"
                     /db_xref="GeneID:116763887"
                     /translation="MDALAWLLPPLLLLCAQQHRGTRAMNDIGDYVGSNLEISWLPNL
                     DGLIEGYARNFRPGIGGPPVNVALAIEVASIDHISEANMEYTMTVFLHQSWRDSRLSY
                     NHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITS
                     TVACDMDLAKYPMDEQDCMLHLESYGYSSEDIVYYWSENQGQIHGLDRLQLAQFTITS
                     YRFTTELMNFKSAGQFPRLSLHVHLRRNRGVYIIQSYMPSILLVAMSWVSFWISQAAV
                     PARVSLGITTVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALVEYAFAHFN
                     ADYRKKQKAKVKVKEQRVEMDVKNAIVLFSLSAAGVTQELAASRRQCRAPGNLMGSYR
                     SVEVETEETKKQGPQGGLRALFKPIDADTIDIYARAVFPAAFAAVNVIYWAAYAM"
     misc_feature    330..881
                     /gene="GABRD"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); Region: LGIC_ECD;
                     cl28912"
                     /db_xref="CDD:475126"
     misc_feature    order(363..365,369..371,387..392,411..413,465..467,
                     471..473,507..512,516..518,522..527,564..572,576..578,
                     606..608,612..614,618..620,630..632,696..698,879..881)
                     /gene="GABRD"
                     /note="pentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349787"
     misc_feature    888..1478
                     /gene="GABRD"
                     /note="transmembrane domain of delta subunits of type-A
                     gamma-aminobutyric acid receptor (GABAAR); Region:
                     LGIC_TM_GABAAR_delta; cd19055"
                     /db_xref="CDD:349857"
     misc_feature    order(888..890,897..902,921..926,930..935,942..944,
                     951..959,966..977,981..989,993..998,1005..1010,1026..1031,
                     1035..1040,1059..1064,1095..1097,1107..1109,1116..1118,
                     1128..1130,1137..1142,1422..1424)
                     /gene="GABRD"
                     /note="pentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349857"
     misc_feature    888..959
                     /gene="GABRD"
                     /note="TM1 helix [structural motif]; Region: TM1 helix"
                     /db_xref="CDD:349857"
     misc_feature    969..1043
                     /gene="GABRD"
                     /note="TM2 helix [structural motif]; Region: TM2 helix"
                     /db_xref="CDD:349857"
     misc_feature    1065..1145
                     /gene="GABRD"
                     /note="TM3 helix [structural motif]; Region: TM3 helix"
                     /db_xref="CDD:349857"
     misc_feature    1395..1469
                     /gene="GABRD"
                     /note="TM4 helix [structural motif]; Region: TM4 helix"
                     /db_xref="CDD:349857"
ORIGIN      
        1 cctcgcgccc gcgccgcgcg ccctcccgct cccgccctct tgtgccgccg ccgccgcggc
       61 cgccggctaa gcaacttctc gagctcccgc gaccggccgg accccggcgc cgcccccggc
      121 ccagcgccca gccggccgag gccatggacg cgctggcctg gctgctgccc ccgcttctgc
      181 tgctctgcgc gcagcagcac cgcggcacca gggcaatgaa tgacattggc gactatgtcg
      241 gctccaacct ggaaatatcc tggctcccca acctggacgg tttgatagag ggctatgccc
      301 gcaacttccg gcctggcatc ggaggccccc ctgtgaacgt ggcactcgcc atcgaggtgg
      361 ccagcatcga ccacatctct gaggcgaaca tggagtacac catgacggtg tttctgcatc
      421 agagctggcg cgacagcagg ctgtcctaca accacaccaa tgagactctg ggcctggaca
      481 gccgcttcgt ggacaagctg tggctccctg acaccttcat cgtgaacgcc aagtccgcct
      541 ggttccacga tgtgacggtg gagaacaagc tcatccggct gcagcccgac ggggtgattc
      601 tctacagcat ccgaatcacc tccacggtgg cctgcgacat ggacctggcc aagtacccca
      661 tggacgagca ggactgcatg ctgcacctgg agagctacgg ctactcgtcc gaggacatcg
      721 tctactactg gtctgaaaac caggggcaga tccacgggct ggacaggctg cagctagcgc
      781 agttcaccat caccagctac cgcttcacca cggagctgat gaacttcaaa tcggccggcc
      841 agttcccccg gctcagcctg cacgtccacc tccggaggaa ccggggcgtc tacatcatcc
      901 agtcctacat gccctccatc ctcctggtcg ccatgtcctg ggtctccttc tggattagcc
      961 aggccgcagt gcccgccagg gtgtctctag gcatcaccac ggtgctgacc atgaccacac
     1021 tgatggtcag tgcccgctcc tccctgccgc gggcgtcggc catcaaggcg ctggatgtgt
     1081 acttctggat ctgctacgtc tttgtgtttg ccgccctggt ggagtacgcc ttcgcccact
     1141 tcaacgctga ctaccggaag aagcaaaagg ccaaggtcaa ggtcaaggag cagagggtcg
     1201 agatggacgt gaagaatgcc atcgtgctct tctccctttc ggccgcgggc gtcacccagg
     1261 agctggccgc gtcccgccgg cagtgccgcg cgcccgggaa cctcatgggt tcctacaggt
     1321 cggtggaggt ggagacagag gagacgaaga aacaggggcc ccaggggggc ctccgtgcgc
     1381 ttttcaagcc catcgacgcg gacaccatcg acatctacgc ccgtgccgtg ttccccgcgg
     1441 ccttcgccgc cgtcaacgtc atctactggg ccgcgtacgc catgtgaggc cggcttcgca
     1501 ggtcccatgc ccgggacctc ctgggggaag gacccccggg gcgctctgcg tgtttcacag
     1561 gggggaggac cacgggccac ataaaaggag aggaaggcct cagcctcgct cagcaccccc
     1621 aggctctgtc cccaccctca cccagacccc tggtctttag aagacggccc agcagcccag
     1681 cctcctgacc tgggagccag gcaggcaccg ggccccaggg agctttgcgt ctgactcgga
     1741 aaaggatcct gattctggga cttagctctg tgggtttgga ccacggaggg ggaggaggcc
     1801 gggcatggaa ggtacgcatc ttctcggtga gaaagcggga aggcctttgg tcccagcatg
     1861 aaataaaacg gagcctttgg cc
//
LOCUS       XM_032652012            6665 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATP binding cassette subfamily A member 4
            (ABCA4), mRNA.
ACCESSION   XM_032652012
VERSION     XM_032652012.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6665
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6665
                     /gene="ABCA4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 41
                     Proteins, and 82% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116763898"
     CDS             273..6263
                     /gene="ABCA4"
                     /codon_start=1
                     /product="retinal-specific phospholipid-transporting
                     ATPase ABCA4"
                     /protein_id="XP_032507903.1"
                     /db_xref="GeneID:116763898"
                     /translation="MSPRIQEFIHRPSVQDLLWVTRPLVQTGGPETFTQLMGTLSDLL
                     CGYPEGGGSRVFSFNWYEDNNYKAFLGIDSTRKDPIYSYDKRTTTFCNALIQSLESNP
                     LTKIAWRAAKPLLMGKILFTPDSPAIRRILKNANSTFEELERFRKLVKAWEEVGPQIW
                     YFFDKSMQMTMIRDTLENPTVKASWNRQLGEEGITAEAVLNFLYRGPREGQADDMDNF
                     DWRDIFNITDRTLRLANQYLECLILDKFESYDDEFQLTQRALSLLEENRFWAGVVFPD
                     MYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQD
                     MVEQGITRSQAQAEVPVGIYLQQMPYPCFVDDSFMIILNRCFPIFVVLAWIYSVSMTV
                     KSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSICLLTIFIMHGRILHYSN
                     PFILFLFLLAFSTATIMQCFLLSTFFSRASLAAACSGVIYFTLYLPHVLCFAWQDRMT
                     ADLKLAVSLLSPVAFGFGTEYLARFEEQGLGLQWNNIGNSPMEGDEFSFLMSMKMMLI
                     DAVLYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWQGGEGCSTREERALEKTEPVTEE
                     MEDPEHPAGINDCFFERELPGLVPGVCVKNLVKIFEHHGRPAVDHLNITFYENQITAF
                     LGHNGAGKTTTLSILTGLLPPTSGTVLIRGKDIETSLDAIRQSLGMCPQHNILFHHLT
                     VAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV
                     GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADILGDRIAIIAQ
                     GRLYCSGTPLFLKNCFGTGFYLTLVRKMKTIQGQGGGCEGTCSCASKGFSIRCPSCVD
                     EITPEQVLDGDVNELMDMVCHHVPEAKLVECVGQELIFLLPNKNFKQRAYASLFRELE
                     ETLGDLGLSSFGISDTPLEEIFLKVTEDCESGPLFAGGTQQKRENVSLRHPCLGSSRK
                     ARQTPQGSHDHPTEPAAPPEQDGHSQLNTGVQLALQHVQALLVKRFHHTVRSYKDFLA
                     QIVLPATFVFLALMLSIIIPPFGEYPALTLHPWIYGQQYTFFSMDQPDSERLMVLADV
                     LVNKPGFGNRCLKEEWLPEFPCGNSTPWKTPSVSPDVTHLLQRQIWTADHPSPSCRCS
                     AREKLTMLPECPGGAGGLPPPQRIQRSTEILQDLTDRNISDFLVKTYPALIRSSLKSK
                     YWVNEQRYGGISIGGKLPAPPITGEALVGFLSDLGQLMNVSGGPLTREASKEMSAFLK
                     HLETEDNIKVWFNNKGWHALVSFLNVAHNAILRASLHEDRNPEEYGITIVSQPLNLTK
                     EQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFVSGVSPTIY
                     WLTNFLWDIMNYTVSAALVVGIFIGFQKKAYTSSDSLPALVALLMLYGWAVIPMMYPA
                     SFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNQTLLRLSAVLRKLLVIFPHF
                     CLGRGLIDLALSQAVTDVYARFGEEHSSNLFQWDLIGKNLVAMAVEGLVYFLLTLLIQ
                     YQFFFTLWPAEPAKEPIIDEDDDVAEERQRIISGGNKTDILRLNELTKIYSGSSSPAV
                     DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDSTVTSGDATVAGKSILTNISDVHQS
                     MGYCPQFDAIDDQLTGREHLYLYARLRGVPAENIKRVTDWSIQSLGLSLYADCLAGTY
                     SAGNKRKLSTAIALIGCPLLVLLDEPTTGMDPQARRMLWNTIMSIIREGRAVVLTSHS
                     MEECEALCTRLAIMAKGTFQCLGTIQHLKYKFGDGYIVTMKIKSPKDDLLPDLGPVEQ
                     FFQGNFPGSVQRERHYNMLQFQVSSSSLARIFRLLVSHRDSLLIEEYSVTQTTLDQVF
                     VNFAKQQTETHDLPLHPRAAGASRQAKEVDKGNSAPQG"
     misc_feature    273..6227
                     /gene="ABCA4"
                     /note="retinal-specific rim ABC transporter; Region:
                     rim_protein; TIGR01257"
                     /db_xref="CDD:130324"
ORIGIN      
        1 ggtgctcact aacaaataga gaggggccgt ctcagcaaac caccacacgg ctcccgcctc
       61 tgtcgtgtca ggacctgggc gtgtgggtgg aagtgtaacc tccaaaccag accgtggagc
      121 caagagactc agagaggggt gttggggact cagcaccaac tggggccagc tgtgtttttc
      181 ctcagcccct tggagatcag aacttcccaa actcctggga cagcagttct caaggtatca
      241 atctgagatc gtggggaaga atattatctg atatgtcgcc aagaattcaa gaattcatcc
      301 accgaccaag tgttcaagac ttgctgtggg tgaccaggcc actcgtgcag actggcggtc
      361 cagagacgtt cacacagctg atgggcaccc tgtctgacct cttgtgtggc tacccagagg
      421 gaggaggctc tcgggtgttc tccttcaact ggtacgaaga caataactat aaagccttcc
      481 tggggattga ctccacaagg aaagatccta tctattctta tgacaaaaga acaacaacct
      541 tttgtaatgc attgatccag agcctggagt caaaccctct aaccaaaata gcctggaggg
      601 cggcaaagcc tttgctgatg ggaaaaatcc tctttactcc ggattccccc gcaatacgca
      661 ggatactgaa gaacgccaac tcgacgtttg aagagctgga gcgtttcagg aagttggtca
      721 aagcctggga agaagtaggg ccccagatct ggtacttctt tgacaagagc atgcagatga
      781 ccatgatcag agacaccctg gagaacccaa cagtaaaagc ctcttggaat aggcagcttg
      841 gtgaagaagg tattactgct gaagccgtac tgaacttcct ctataggggc ccacgagagg
      901 gccaggctga tgacatggac aacttcgact ggagggatat atttaacatc actgatcgca
      961 cactacgcct ggctaatcaa tacctggagt gcttgatcct ggataagttt gaaagctacg
     1021 atgatgaatt tcagctcacc caacgagccc tgtctctgct ggaggaaaac aggttctggg
     1081 ctggtgtggt atttcctgac atgtatccct ggaccagctc cctaccaccc catgtgaagt
     1141 acaagatccg aatggacata gatgtggtgg agaaaaccaa taagatcaaa gacagatact
     1201 gggattctgg ccccagagct gatcctgtgg aagacttccg atacatctgg ggcgggtttg
     1261 cctatctgca ggacatggtt gaacagggga tcacaaggag tcaggcccag gctgaggttc
     1321 cagttggaat ctacctccag cagatgcctt acccctgctt cgtggatgac tcgtttatga
     1381 tcatcctgaa ccgctgtttc cctatcttcg tggtgctggc ctggatctac tctgtctcca
     1441 tgactgtaaa gagcatcgtc ttggagaagg agttgagact gaaggagacc ttgaaaaatc
     1501 agggtgtctc caacgcagtg atttggtgta cctggttcct ggacagcttc tctatcatgt
     1561 cgatgagcat ctgtctcctg acgatattca tcatgcatgg aaggatcctg cattatagca
     1621 atccattcat cctcttccta ttcctgttgg ctttctccac tgctacaatc atgcagtgct
     1681 tcctgctcag caccttcttc tccagggcca gcctggcagc agcctgtagt ggtgtcatct
     1741 acttcaccct ctacctgcca cacgttctct gctttgcttg gcaggaccga atgacggccg
     1801 acctgaagct ggctgtgagc ctgctgtctc ctgtggcatt tgggtttggt actgagtacc
     1861 tggctcgctt tgaagagcaa ggcctggggc tacagtggaa caatattggg aatagtccca
     1921 tggaagggga tgaattcagt tttctgatgt ccatgaagat gatgcttatt gatgctgttc
     1981 tgtatggctt gcttgcctgg tatcttgacc aggtgtttcc aggggactat ggaaccccac
     2041 ttccttggta cttccttcta caagagtctt attggcaagg tggtgaaggg tgttcaacca
     2101 gagaagaaag ggccttggaa aagacggaac ccgtaacaga ggaaatggag gacccagaac
     2161 acccagcagg aataaatgac tgcttctttg aacgtgagct cccaggcttg gttcccgggg
     2221 tgtgtgtgaa gaatctggta aagatctttg agcaccatgg caggccagct gtggaccatc
     2281 ttaacatcac cttctatgaa aaccagatca ccgcatttct cggtcacaat ggagcaggga
     2341 aaaccacgac cttgtccatc ctgacgggtc tgttgccacc gacatccggg actgtgctca
     2401 ttaggggaaa ggacattgaa accagcctgg atgctatccg gcagagcctt ggcatgtgtc
     2461 cacagcacaa catcctgttc caccacctca cagtggctga acacatccta ttctacgcgc
     2521 agctgaaagg gaggtcctgg gaggaggccc agctggagat ggaagccatg ctggaggaca
     2581 caggcctcca ccacaagagg aatgaagaag ctcaggacct ctcaggtggc atgcagagga
     2641 agctgtccgt tgccattgcc ttcgtgggag atgccaaggt ggtggttctg gatgagccca
     2701 cctctggggt ggatccctac tcgaggcgct caatctggga cctgctcctg aaatatcgct
     2761 caggcagaac catcatcatg tccactcacc acatggacga ggccgacatc ctcggggacc
     2821 gcatcgccat catagcccag ggacggctct actgctccgg caccccgctc ttcctaaaga
     2881 actgctttgg cacaggcttc tacttaacct tggtgcgcaa gatgaagacc atccagggcc
     2941 aaggaggagg ctgtgagggg acctgcagct gtgcgtctaa gggtttctcc atcaggtgtc
     3001 catcctgcgt cgatgagata actccagaac aagtcttgga cggggatgtg aatgagctga
     3061 tggatatggt ttgccaccat gttccggagg cgaagctggt ggaatgtgtt ggtcaagagc
     3121 tcatcttcct tcttccaaat aagaatttca agcagagggc atatgccagc cttttcagag
     3181 agctggagga gaccctgggt gacctggggc tcagcagttt tggaatttct gacactcccc
     3241 tggaagagat ttttctgaag gtcacggagg attgtgagtc aggacctctg tttgctggcg
     3301 gcactcagca gaaaagagaa aacgtcagtc ttcgacaccc ctgtttgggt tctagcagga
     3361 aggccagaca gactccacag ggctcccacg accaccccac ggagcccgct gcacccccgg
     3421 agcaggatgg gcacagccaa cttaacacgg gagtgcagct ggccctccag cacgtgcagg
     3481 cgctgctggt caagcggttc caccacactg tccgcagcta caaggacttc ctggcccaga
     3541 ttgtgctccc ggccactttt gtgtttctgg ctctgatgct ttccatcatc atccctcctt
     3601 ttggcgaata tcctgctttg acccttcacc cctggatata tgggcagcag tataccttct
     3661 tcagcatgga ccagccggac agcgagcggc tcatggtgct tgcagatgtc ctcgtgaata
     3721 agccaggctt tggcaaccgc tgcctgaagg aagagtggct tccggagttc ccctgtggca
     3781 attcaacccc ctggaagact ccctctgtgt ccccggatgt cacccacctg ctccagaggc
     3841 agatatggac agcagaccac ccctcgcctt cctgcaggtg cagcgccaga gagaagctca
     3901 ccatgctccc cgagtgccct gggggcgcag gggggctccc accccctcag agaatacagc
     3961 gcagcactga aattctacaa gaccttacag acaggaacat ctccgacttc ttggtaaaaa
     4021 cgtatcctgc tcttatacga agcagtttga agagcaaata ctgggtcaat gaacagaggt
     4081 acggaggaat ttccattgga ggaaagctcc cggctccccc catcactgga gaagcccttg
     4141 ttggattttt aagtgacctt ggccagttaa tgaatgtgag cgggggccct ctcaccagag
     4201 aagcctctaa agaaatgtct gctttcctta aacatctaga aactgaagac aacattaagg
     4261 tgtggtttaa caacaaaggc tggcatgccc tggtcagctt cctcaacgtg gcccacaacg
     4321 ccatcttacg ggccagcctg catgaggaca ggaaccccga ggagtatggc atcaccattg
     4381 taagccagcc tctgaacctg accaaggagc agctctccga aattacagtg ctgaccactt
     4441 ctgtggatgc tgtggtggcc atctgtgtga tctttgccat gtccttcgtc cctgccagct
     4501 ttgtccttta tttgatccag gagagggtga acaaagctaa gcacctccag tttgtcagtg
     4561 gagtgagtcc caccatctac tggctgacca acttcctctg ggacatcatg aattacactg
     4621 tgagcgctgc actggtggtg ggcatcttca tcgggtttca gaagaaagcc tacacttctt
     4681 cagacagtct tccagccctg gtcgcactgc tcatgctgta cggatgggca gtcattccca
     4741 tgatgtaccc ggcatccttc ctatttgatg tccccagcac agcctatgtg gccttatctt
     4801 gtgctaatct gttcatcggc atcaacagca gtgccatcac cttcgttttg gaattatttg
     4861 agaataacca gacactgctc aggctcagtg ccgtgctgag gaagctgctc gttatcttcc
     4921 cccacttctg cctgggccgg ggcctcattg acctggcact gagccaggct gtgacagacg
     4981 tctatgcccg gtttggtgag gagcactctt caaatctgtt ccagtgggac ctgattggga
     5041 agaacctggt tgccatggca gtagaagggt tggtgtactt cctcctgacc ctcctcatcc
     5101 agtaccaatt cttcttcacc ctatggcctg ccgagcctgc taaggagcct atcatagatg
     5161 aagatgatga tgtggctgaa gaaagacaaa gaattattag tggaggaaat aaaactgata
     5221 tcttaaggct aaatgaacta accaagattt attcaggcag ctccagccca gcggtggaca
     5281 ggctgtgtgt gggagtccgc cctggagagt gctttggcct cctgggagtg aatggagctg
     5341 gcaaaacaac cacattcaag atgctcactg gggacagcac agtgacgtca ggggatgcca
     5401 ctgtcgcagg caagagtatt ttaaccaata tttctgacgt ccatcaaagt atgggctact
     5461 gtcctcagtt tgatgcaatc gatgaccagc ttacagggcg agaacatctt tacctttatg
     5521 cccggcttcg aggtgtacca gcagagaaca tcaagagggt gacagactgg agtattcaga
     5581 gcctgggcct gtctctctac gcagactgcc tggccggcac ctacagtgca ggcaataagc
     5641 ggaaactctc cacagccatt gcactgatag gctgcccact gttggtgcta ctggatgagc
     5701 ccaccacagg catggacccc caggcacgcc gcatgctgtg gaacaccatc atgagcatca
     5761 tcagagaagg gagagctgtg gtcctcactt cccacagcat ggaagagtgc gaggcgctgt
     5821 gtacccggct tgccatcatg gcgaagggca cctttcagtg tctgggcacc attcagcacc
     5881 tcaagtacaa gtttggagat ggctacatcg tcacaatgaa aatcaaatcc ccgaaggatg
     5941 acctgcttcc cgacctgggc cccgtggagc agttcttcca ggggaacttc ccaggcagcg
     6001 tgcagaggga gaggcactac aacatgctgc agttccaggt ctcctcctcc tccctggcca
     6061 ggatcttccg gctgctcgtc tcccaccggg acagcctgct catcgaggag tactcagtca
     6121 cgcagaccac gctggaccag gtgtttgtga actttgctaa gcagcagact gaaactcatg
     6181 acctcccttt gcaccctcga gctgctggag ccagtcgaca ggccaaggaa gtggacaaag
     6241 ggaattctgc acctcaagga tgacctaaat ggtgacttct gggcttttga gacactggaa
     6301 aggaactctg ggcagctgga attgcaggag cctttgccat atggtcgttc aatcaggcca
     6361 gccagcataa gtaatccctt ggcagcagaa acaaacatat gtgaggcaca cagcgaattc
     6421 caaatggggg ctcttttaga aggaaaccag aactgacttg ctcacctgga acacctgatg
     6481 gtgaaactga cccagccaaa tgagtgcaaa acccttttca tcggaaccac agaagtggaa
     6541 aacttggtcc atcttcctac tggctgtggc ctccacactg ctctcatttc aagtggatct
     6601 gcttttttct gtgtgtgttt tatttttaag gagaaaataa aatacaaaca tacttatcac
     6661 aaact
//
LOCUS       XR_004352677            2851 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116763915
            (LOC116763915), ncRNA.
ACCESSION   XR_004352677
VERSION     XR_004352677.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2851
                     /gene="LOC116763915"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116763915"
     ncRNA           1..2851
                     /ncRNA_class="lncRNA"
                     /gene="LOC116763915"
                     /product="uncharacterized LOC116763915"
                     /db_xref="GeneID:116763915"
ORIGIN      
        1 tctcccactt gttcatgtga ccctgcctgg agtcaaggag aagcaggctt ctcaatcaga
       61 gctccattct ccctgagccg ggccccatgc cctgggtttt tttcctccaa agagactgaa
      121 gcctggggag cacctccacc tcatcccacc ccagcaacct gatcagcttg tcctggagcg
      181 ggactgggac ctcagactca cgagtcatcc acgaagcagg gatttagtga ggaccgcact
      241 atcgggctgt cgaagtatgc aagtcgtcaa aatgacaaaa atactcccag ctctcactcc
      301 ccagcatggg gagtcaaggg agtggggtca catcagatac aagctgcttt gaagatcaga
      361 aagcctgcta ataaaagagt tttaaagaga gagagaaaca gtcccagcgg taaaccttcc
      421 tgcctctctg caaacacaca aggatggcca actgaggcaa gaacaaggag gaagaaagaa
      481 aataacagaa agccaaagtg atttcatcag ggaaatcatt cccagttaca attttatgac
      541 aggtaatgag gatggaggaa gaatttccta acatgtcttt tttttttctc ccccagaaga
      601 gaaaaaaatc attacccaga aaagagcaaa actaagaatt tcttttaatt tgaatattgg
      661 gaattgtcca cttttacaga tttgttaaag tgttgtattg tacttggatg tgttttatcc
      721 ttaacctcct gtttctataa cacactgggg ctattgtgcc atgtttcttt cttagaatgt
      781 aactcacaag aggtcagctg gccttgtctt gattaatctg ttcatggaat acttactgag
      841 agcctgcaat gtgccagagc ctgcttggct ccaggggtta caaggaggaa agataaaatc
      901 tcttactaaa agaaactcca gacctaatga gggagagggt tggagtaaac caacaatcag
      961 aatgcagaat gatcaggttc tggtgaaagc aagcctaggg tagtctagca gcccagtgga
     1021 ggggtgggtg ggggagtccc agagggctgc ctggaggaag agactcctga gcaggatgag
     1081 aatcagcagg aattagccaa gggaagaaag caagggaaag gtcagctcag gcacagggaa
     1141 tagctcgcag ggtttctgga gacctgcaag aatagaatag tggttccctt ccttggctgt
     1201 gctttagaac catcacggag ttttaaaagg acaactgtac tcaagtccca ccccaaacaa
     1261 tgaaatcaga ttctcaagag gcagggccaa ggcatcagca ttttgtcaaa cactccccag
     1321 cttgtgccaa tgtacagaga agaacgtagg tgagaggtaa gagatgtgta ctaagaaggc
     1381 aggtggggac caggtcagtt gccctgctgg gtttgcaggg tgaccagcca actgagaggt
     1441 ttcatgggat gcagggcttt ctatgctaaa atcaggagtt tcctggcaaa ccctaaaaag
     1501 ccacaagaaa ccactgtagg gttttaagca gaggcatgac atatgagatc agaccgtgtt
     1561 tctgaaagat cactggtggt gggaaggggg agcacgaagc ctggttagaa ggctgttgat
     1621 gtaacacagg cttaaaagaa catattaact ctcccacaga gcctgtgagt tacctggaat
     1681 cctcatttta ttgaagagga gacctaccag aggtcacgca gctagacggt ggcagagcct
     1741 gcattctctc cccatttttc aactccaggc ccagacttcc tcccacacca ggagccacag
     1801 gcaaagcctg atccacaggc tctccatgtg ctcatgactg tcttgcaaag taagagagga
     1861 caactattac ttatctctct ctctatttta aaataatcta tctctctctt cttttaaatc
     1921 agtttgtcga gtttaggacc gcatatatag ttttagtatt gacaaataga gtgaacctga
     1981 aattaaattt ctaaaataat catgaaagtt cttggggaga tggaaattct ctgcagtttc
     2041 ttttagctgt gacacacaca cacacacaca cacgcacagt attctaccaa ttccctcata
     2101 gcatcacagg gcccttggac agacggagtc atagagaggt cttacagtct gatgtgcttg
     2161 cttactgatg aggaaactgg catcctaggg ccttgctcca ggtcaatata ggtcagaagc
     2221 agaatatgaa tccatgtttt caagtgtcag gcctgaaggg tactgctgtt ccttcacatt
     2281 gctctaagag taagccatac tccaactaca aagtcggagc aacagaattc ctaaacaaga
     2341 tctcttgccc ctgtccagta ggtcagcact gtccagcaga actttctaca atgatggaaa
     2401 cgttctgttt ctgccctatc caacatggta gccagtaacc acatatggct attgaatact
     2461 tgaaatgtag ctagtgcatc tgaggcactg attttttcac tttatttaaa tttaaatagc
     2521 aacatgtggt tactgcacag ctctagagac agtaagttcc cggaggtcag gggccatgtc
     2581 ttattcatta ggtctctgga acagtatttc ctcatgaaag ggactcaata agtgtctact
     2641 gaattgaatt aattcaaatt tagaagtccc aaaagctgca agaaatataa ctttactact
     2701 gtgtgttttg aacataatcc tgtgcacccg aaatcagatg gtaaactagg agaaatcagt
     2761 gaaaggtgaa tttttgatat aatgttaata agagtataac tctcagtgaa gcaaaaaagc
     2821 taataaaaac aaacacattt taataatgtg a
//
LOCUS       XM_032652042            2612 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prostaglandin E receptor 3 (PTGER3),
            transcript variant X1, mRNA.
ACCESSION   XM_032652042
VERSION     XM_032652042.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2612
                     /gene="PTGER3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763919"
     CDS             572..1741
                     /gene="PTGER3"
                     /codon_start=1
                     /product="prostaglandin E2 receptor EP3 subtype isoform
                     X1"
                     /protein_id="XP_032507933.1"
                     /db_xref="GeneID:116763919"
                     /translation="MKETRGHASSPFCTRLNHSYPGIWAPERSAEARSNLTRPAGPGE
                     DFGSVSVAFPMTMLITGFVGNALAMLLVSQSYRRRESKRKKSFLLCIGWLALTDLVGQ
                     LLTSPVVIVLYLSHQRWEQLDPSGRLCTFFGLIMTVFGLSSLFIASAMAVERALATRA
                     PHWYASHMKTSSTRAVLLGVWLAVLAFALLPVLGVGQYTIQWPGTWCFINTGAGGNGT
                     SPSHNRGNIFFASSFAFLGLSALAVTFACNLATIKALVSRCRAKATASQSSAQWGRIT
                     TETAIQLMGIMCVLSVCWSPLLIMMLKMIFNHTSVEHCKSYTEKQKECSFFLIAVRLA
                     SLNQILDPWVYLLLRKILLQKFCQIRHHTNNYASSSTSLPHQCSSTLMWSDHLER"
     misc_feature    713..1642
                     /gene="PTGER3"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    719..793
                     /gene="PTGER3"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320274"
     misc_feature    833..901
                     /gene="PTGER3"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320274"
     misc_feature    959..1027
                     /gene="PTGER3"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320274"
     misc_feature    1094..1144
                     /gene="PTGER3"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320274"
     misc_feature    1247..1318
                     /gene="PTGER3"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320274"
     misc_feature    1409..1477
                     /gene="PTGER3"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320274"
     misc_feature    1541..1618
                     /gene="PTGER3"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320274"
ORIGIN      
        1 gtccgccttg gcaacttggc tgaggtgggg tagaccaggg agacactgta gcccccgccg
       61 cccacggacg ctcctctggc agagaaccgg aggaggcgcg gagccgggca cggcagcctg
      121 gctgggcgtc cgctctggcc aggatttgga acatttcgag aggagtcctc cgggggattt
      181 gccgagccca ggcggccaag gcattggtcg cgcagcagcc gagagaggcg ctcagtttct
      241 gccgcatccc ctcccacagc actttggccg acacccacgg gcgccccgcc cccctcgggc
      301 ttatagcacc tccacacgcc tgggagccgg acgcatcccg gagccgactg cgcggctgcc
      361 tgtgtctccg gaaagccccg ccgccgccgc cgccgccgaa gtggcgaagt gaggcggcgg
      421 ctgagccccg catcatggag ggcagctccg ccgcggcccc agccccagcc ccagtcccag
      481 tctccactga caaccgccgc ctcccgcgtc cggtcggccg gctctcgtcg ctgctctcag
      541 ggctccgttc cttcctcacc tcgaagacag tatgaaggag acgcggggcc atgcgagttc
      601 ccctttctgc acgcgcctca accactccta ccccggcatc tgggcgccgg agcgctccgc
      661 tgaggcgcgg agcaacctaa cgcgtcccgc ggggcccggc gaggatttcg gctcagtgtc
      721 tgtagccttc ccgatgacca tgctgatcac tggcttcgtg ggcaacgcgt tggccatgct
      781 gctcgtgtct cagagctacc ggcgccggga gagcaagcgc aagaagtcgt tcctgctatg
      841 catcggctgg ctggcgctca ccgacctggt cgggcagctg ctcaccagcc cggtggtcat
      901 cgtcctgtac ctgtcccacc agcgctggga gcagctcgac ccgtctggga ggctgtgcac
      961 cttcttcgga ctcatcatga ccgtctttgg gctctcttcg ctcttcatcg ccagcgccat
     1021 ggccgtcgag cgggcgctgg ccacccgggc gccgcactgg tacgcgagcc acatgaagac
     1081 gagctccacc cgcgccgtgc tgctcggcgt gtggctggcg gtgctcgcct tcgccctact
     1141 gccggtgctg ggcgtgggtc agtacaccat ccagtggccc gggacgtggt gcttcattaa
     1201 caccggggca gggggcaatg ggactagccc ttcgcacaac cggggcaaca ttttcttcgc
     1261 ttcctccttt gctttcctgg ggctgtcagc gctggcagtc accttcgcct gcaacttggc
     1321 caccattaag gccctagtgt cccgctgccg ggccaaggcc acggcgtcgc agtccagcgc
     1381 ccagtggggc cggatcacga ccgagacggc tatccagctc atggggatca tgtgcgtgct
     1441 gtcggtctgc tggtcgccgt tgctgataat gatgttgaaa atgatcttca atcatacatc
     1501 agttgagcac tgcaagtcgt acacagaaaa gcagaaagag tgcagcttct tcttaatagc
     1561 tgttcgcctg gcttcactga accagatctt ggatccctgg gtttatctgc tgctaagaaa
     1621 gatccttctt caaaagtttt gccagatcag gcaccacaca aacaactatg catccagctc
     1681 cacctcttta ccccaccagt gctcctcaac cctgatgtgg agtgaccact tggaaagata
     1741 atgaaagaac ggagttggac tttttattgt aattcctgct tccctgagtt tgtgtatttc
     1801 ttcctacttg agaaggagaa ttttatattt tgattttttc ttctttttca tcttttaaaa
     1861 aattttaatg ttttttcttg tcagtaatac ccactgagac caaatttatt actgtaatat
     1921 gtgtctttga gtattaaaaa ttggtttctg ggactggatt ttgagtatat atttaagaag
     1981 ctgggtacaa ttgcacaggt ggtgactgac gaaaaaatga gaaaaagaaa accccatcct
     2041 tcatgagttt taccccaact tcaaaccctt atgtgaatct caactgatgt ggatatcttt
     2101 acattttatg gtagttttga ttttacaata tgagtttgta aaatcagtaa aagattttgt
     2161 cagtgaaaag tcaacttact gagagcaaga attcaattaa taagacataa gcttcacgag
     2221 atagaaaagg atgccaaatg aaggcaggag ggtaccatga ccaaagatat ttatgcaaaa
     2281 tgtgtgatta atgttttgga gatgtgttct tctgggctaa gctgggaact aaaagttctt
     2341 aagtctgtat tctggttata tgtcatttag taattcagga atcagcataa ttgttatttc
     2401 tctgtctttg aagactgaaa tgtgtgatgc aatgaagagc tgtcttgaaa tgtcatagaa
     2461 aataatgaag ctaaggggtg aactgttgag ttggagcatt aaaaaatcca ggtgcagcct
     2521 ctgatccacc agtatcaatt cagcatttct tacaatttct tcttgggtga catacaaaag
     2581 acaaaattaa taaatgacat agttatcaac ta
//
LOCUS       XM_032652051            2436 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prostaglandin E receptor 3 (PTGER3),
            transcript variant X2, mRNA.
ACCESSION   XM_032652051
VERSION     XM_032652051.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2436
                     /gene="PTGER3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763919"
     CDS             576..1565
                     /gene="PTGER3"
                     /codon_start=1
                     /product="prostaglandin E2 receptor EP3 subtype isoform
                     X2"
                     /protein_id="XP_032507942.1"
                     /db_xref="GeneID:116763919"
                     /translation="MKETRGHASSPFCTRLNHSYPGIWAPERSAEARSNLTRPAGPGE
                     DFGSVSVAFPMTMLITGFVGNALAMLLVSQSYRRRESKRKKSFLLCIGWLALTDLVGQ
                     LLTSPVVIVLYLSHQRWEQLDPSGRLCTFFGLIMTVFGLSSLFIASAMAVERALATRA
                     PHWYASHMKTSSTRAVLLGVWLAVLAFALLPVLGVGQYTIQWPGTWCFINTGAGGNGT
                     SPSHNRGNIFFASSFAFLGLSALAVTFACNLATIKALVSRCRAKATASQSSAQWGRIT
                     TETAIQLMGIMCVLSVCWSPLLIRHHTNNYASSSTSLPHQCSSTLMWSDHLER"
     misc_feature    717..>1472
                     /gene="PTGER3"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    723..797
                     /gene="PTGER3"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320274"
     misc_feature    837..905
                     /gene="PTGER3"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320274"
     misc_feature    963..1031
                     /gene="PTGER3"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320274"
     misc_feature    1098..1148
                     /gene="PTGER3"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320274"
     misc_feature    1251..1322
                     /gene="PTGER3"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320274"
     misc_feature    1413..1472
                     /gene="PTGER3"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320274"
ORIGIN      
        1 tcaggtccgc cttggcaact tggctgaggt ggggtagacc agggagacac tgtagccccc
       61 gccgcccacg gacgctcctc tggcagagaa ccggaggagg cgcggagccg ggcacggcag
      121 cctggctggg cgtccgctct ggccaggatt tggaacattt cgagaggagt cctccggggg
      181 atttgccgag cccaggcggc caaggcattg gtcgcgcagc agccgagaga ggcgctcagt
      241 ttctgccgca tcccctccca cagcactttg gccgacaccc acgggcgccc cgcccccctc
      301 gggcttatag cacctccaca cgcctgggag ccggacgcat cccggagccg actgcgcggc
      361 tgcctgtgtc tccggaaagc cccgccgccg ccgccgccgc cgaagtggcg aagtgaggcg
      421 gcggctgagc cccgcatcat ggagggcagc tccgccgcgg ccccagcccc agccccagtc
      481 ccagtctcca ctgacaaccg ccgcctcccg cgtccggtcg gccggctctc gtcgctgctc
      541 tcagggctcc gttccttcct cacctcgaag acagtatgaa ggagacgcgg ggccatgcga
      601 gttccccttt ctgcacgcgc ctcaaccact cctaccccgg catctgggcg ccggagcgct
      661 ccgctgaggc gcggagcaac ctaacgcgtc ccgcggggcc cggcgaggat ttcggctcag
      721 tgtctgtagc cttcccgatg accatgctga tcactggctt cgtgggcaac gcgttggcca
      781 tgctgctcgt gtctcagagc taccggcgcc gggagagcaa gcgcaagaag tcgttcctgc
      841 tatgcatcgg ctggctggcg ctcaccgacc tggtcgggca gctgctcacc agcccggtgg
      901 tcatcgtcct gtacctgtcc caccagcgct gggagcagct cgacccgtct gggaggctgt
      961 gcaccttctt cggactcatc atgaccgtct ttgggctctc ttcgctcttc atcgccagcg
     1021 ccatggccgt cgagcgggcg ctggccaccc gggcgccgca ctggtacgcg agccacatga
     1081 agacgagctc cacccgcgcc gtgctgctcg gcgtgtggct ggcggtgctc gccttcgccc
     1141 tactgccggt gctgggcgtg ggtcagtaca ccatccagtg gcccgggacg tggtgcttca
     1201 ttaacaccgg ggcagggggc aatgggacta gcccttcgca caaccggggc aacattttct
     1261 tcgcttcctc ctttgctttc ctggggctgt cagcgctggc agtcaccttc gcctgcaact
     1321 tggccaccat taaggcccta gtgtcccgct gccgggccaa ggccacggcg tcgcagtcca
     1381 gcgcccagtg gggccggatc acgaccgaga cggctatcca gctcatgggg atcatgtgcg
     1441 tgctgtcggt ctgctggtcg ccgttgctga tcaggcacca cacaaacaac tatgcatcca
     1501 gctccacctc tttaccccac cagtgctcct caaccctgat gtggagtgac cacttggaaa
     1561 gataatgaaa gaacggagtt ggacttttta ttgtaattcc tgcttccctg agtttgtgta
     1621 tttcttccta cttgagaagg agaattttat attttgattt tttcttcttt ttcatctttt
     1681 aaaaaatttt aatgtttttt cttgtcagta atacccactg agaccaaatt tattactgta
     1741 atatgtgtct ttgagtatta aaaattggtt tctgggactg gattttgagt atatatttaa
     1801 gaagctgggt acaattgcac aggtggtgac tgacgaaaaa atgagaaaaa gaaaacccca
     1861 tccttcatga gttttacccc aacttcaaac ccttatgtga atctcaactg atgtggatat
     1921 ctttacattt tatggtagtt ttgattttac aatatgagtt tgtaaaatca gtaaaagatt
     1981 ttgtcagtga aaagtcaact tactgagagc aagaattcaa ttaataagac ataagcttca
     2041 cgagatagaa aaggatgcca aatgaaggca ggagggtacc atgaccaaag atatttatgc
     2101 aaaatgtgtg attaatgttt tggagatgtg ttcttctggg ctaagctggg aactaaaagt
     2161 tcttaagtct gtattctggt tatatgtcat ttagtaattc aggaatcagc ataattgtta
     2221 tttctctgtc tttgaagact gaaatgtgtg atgcaatgaa gagctgtctt gaaatgtcat
     2281 agaaaataat gaagctaagg ggtgaactgt tgagttggag cattaaaaaa tccaggtgca
     2341 gcctctgatc caccagtatc aattcagcat ttcttacaat ttcttcttgg gtgacataca
     2401 aaagacaaaa ttaataaatg acatagttat caacta
//
LOCUS       XM_032652062            1291 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5'-nucleotidase, cytosolic IA (NT5C1A),
            mRNA.
ACCESSION   XM_032652062
VERSION     XM_032652062.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1291
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1291
                     /gene="NT5C1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 Proteins, and 73%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763930"
     CDS             1..1098
                     /gene="NT5C1A"
                     /codon_start=1
                     /product="cytosolic 5'-nucleotidase 1A"
                     /protein_id="XP_032507953.1"
                     /db_xref="GeneID:116763930"
                     /translation="MEPGEPREPREPGPGAGTAAAPRWEEAKTFHDNLAPKKKPKSPK
                     PQNAVTIAVSSRALFRMDEEQRIYTEQGVEEYVRYQLEHENEPFSPGPAFPFVKALEA
                     VNRRLRELYPESEDVFDIVLVTNNHAQVGVRLINSINHYDLTIERFCMTGGNSPICYL
                     KAYHTNLYLSADAEKVQEAIDEGIAAATIFSPSRDVAVSQSQLRVAFDGDAVLFSDES
                     ERIVKAHGLDRFFEHEKVHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYL
                     VTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGA
                     QEMGTVAAHVPYGVAQTPRRTTPTKQATSAP"
     misc_feature    232..1050
                     /gene="NT5C1A"
                     /note="5'-nucleotidase; Region: 5-nucleotidase; pfam06189"
                     /db_xref="CDD:461846"
ORIGIN      
        1 atggagcctg gagagccccg ggagccccgc gagcccgggc cgggggcagg gaccgccgcg
       61 gccccgcgct gggaggaagc caagactttc cacgacaacc tcgcgcccaa gaagaaaccc
      121 aaatcgccca agcctcagaa tgcggtcacc attgctgtgt cttcccgagc cctgttccgc
      181 atggacgagg agcaacggat ctacacggag cagggtgtgg aggagtacgt gcgttaccag
      241 ctggaacacg agaacgagcc cttcagccct gggccggcct tccccttcgt gaaggctctg
      301 gaggctgtga acaggcggct gcgggagctg taccctgaga gcgaggacgt cttcgacatc
      361 gtcctcgtga ccaacaacca cgctcaagtg ggcgtccgtc tcatcaacag catcaaccac
      421 tatgacctga ccattgagag gttctgcatg acaggcggga acagccccat ctgctacctc
      481 aaggcctatc acaccaatct ctatttgtcg gctgatgcag aaaaagtgca ggaagccatt
      541 gatgaaggga tcgcagccgc caccatcttc agccccagca gggatgtggc tgtctctcag
      601 agtcagctgc gggtggcctt cgatggggat gctgtgctct tctcagatga gtcggaacgc
      661 atcgtgaagg cccatgggct ggacaggttc ttcgagcatg agaaggtcca cgagaacaaa
      721 cctttggccc agggcccctt aaagggtttt ctggaggctc tgggtaggct gcagaagaag
      781 ttctactcca agggcctgcg gctggagtgt ccaatccgca cctacttggt gacggcacgc
      841 agtgccgcca gttctggagc ccgggctctc aagaccctgc gcagctgggg cctggagaca
      901 gacgaggccc tgttcctcgc gggagcgccc aagggccccc tcctggagaa gatccgccca
      961 catatcttct ttgatgacca gatgttccac gtggctgggg ctcaggagat gggcacagtg
     1021 gccgcccacg tgccttacgg tgtggcgcag acaccccggc ggaccacacc cacgaagcaa
     1081 gccacatctg caccgtagct gaaccaccag ctttgctgac ccacattgct ccaggcatgg
     1141 ctccatgtca tacacgtcgc ccaatggacg cttctagttc ctcacctctc tgcccttctg
     1201 catgtccgcc ctcatcccta tgagtgaggt acttgtagga aattaggcag actggtccgg
     1261 cattctcacc ggctcccctt ttgggaaaac a
//
LOCUS       XM_032652073            8830 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neurofascin (NFASC), transcript variant
            X1, mRNA.
ACCESSION   XM_032652073
VERSION     XM_032652073.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8830
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8830
                     /gene="NFASC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 10 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763936"
     CDS             170..3403
                     /gene="NFASC"
                     /codon_start=1
                     /product="neurofascin isoform X1"
                     /protein_id="XP_032507964.1"
                     /db_xref="GeneID:116763936"
                     /translation="MARQQPPPWVHTAFLFCLLSLSGAIEIPMDLSQPPTITKQSVKE
                     HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR
                     PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP
                     GLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ
                     QKNPFNLKVLTNHPYNDSSLRNHPDMYSARGVAERTPSFMYPQGTASSQMVLRGMDLL
                     LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG
                     SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP
                     PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQL
                     IRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQG
                     IYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAKRGTTVQLECRVKHDPSLKLTV
                     YWLKDDEPLYVGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQ
                     ATPTNRLAALPKGRPDRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQ
                     PGVWHDHSKFPGSVNSAILQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPES
                     NPSDVKGEGTRKNNMEITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYV
                     VGQTPVYVPYEIRVQAENDFGKGPEPDTVIGYSGEDLPSAPRRFRVRQPNLETINLEW
                     DHPEHPNGILIGYTLKYVAFNGTKVGKQIVENFSPNQTKFTMQRADPVSRYRFSLSAR
                     TQVGSGEAVTEESPAPPNEAYTNNQADIATQGWFIGLMCAVALLVLTLLIVCFIKRSR
                     GGKYPVREKKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVD
                     YGEGGEGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA"
     misc_feature    272..556
                     /gene="NFASC"
                     /note="Immunoglobulin (Ig)-like domain of human
                     neurofascin (NF); member of the I-set of Ig superfamily
                     (IgSF) domains; Region: IgI_hNeurofascin_like; cd05875"
                     /db_xref="CDD:409459"
     misc_feature    272..286
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409459"
     misc_feature    299..313
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409459"
     misc_feature    326..349
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409459"
     misc_feature    365..382
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409459"
     misc_feature    389..397
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409459"
     misc_feature    416..427
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409459"
     misc_feature    440..454
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409459"
     misc_feature    491..517
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409459"
     misc_feature    524..556
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409459"
     misc_feature    581..853
                     /gene="NFASC"
                     /note="Second immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; member
                     of the I-set of Ig superfamily (IgSF) domains; Region:
                     IgI_2_L1-CAM_like; cd05845"
                     /db_xref="CDD:409432"
     misc_feature    581..592
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409432"
     misc_feature    596..610
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409432"
     misc_feature    617..643
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409432"
     misc_feature    662..682
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409432"
     misc_feature    689..700
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409432"
     misc_feature    716..730
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409432"
     misc_feature    734..748
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409432"
     misc_feature    779..805
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409432"
     misc_feature    812..853
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409432"
     misc_feature    956..1204
                     /gene="NFASC"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; Region:
                     Ig3_L1-CAM_like; cd05731"
                     /db_xref="CDD:409394"
     misc_feature    992..1006
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409394"
     misc_feature    1031..1045
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409394"
     misc_feature    1097..1111
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409394"
     misc_feature    1139..1156
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409394"
     misc_feature    1178..1189
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409394"
     misc_feature    1214..1480
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1262..1276
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1301..1315
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1373..1387
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1415..1432
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1454..1465
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1550..1756
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1583..1597
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1652..1666
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1694..1711
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1733..1744
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1784..2029
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1817..1831
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1862..1873
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1925..1939
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1967..1984
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2006..2017
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    2084..2356
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2084..2086,2282..2284,2327..2329)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    <2276..>3010
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    order(2330..2335,2339..2344)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2675..2950
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2675..2677,2876..2878,2921..2923)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(2924..2929,2933..2938)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    3074..3328
                     /gene="NFASC"
                     /note="Bravo-like intracellular region; Region:
                     Bravo_FIGEY; pfam13882"
                     /db_xref="CDD:464016"
ORIGIN      
        1 tttgggacgc tggagtgttc cttcccgctg cagactggaa gggagccccc tctggtgtta
       61 caggaaggag gctgaatgag gcagagacgc tgagctctgt ccgggaggcc cagttacagc
      121 ggctggaggc tgtgggccag ggagcaggga gcgaggccca gtgctcagga tggccaggca
      181 gcagccaccg ccctgggtcc acacagcctt cctcttctgc ctgctcagcc tcagcggggc
      241 catcgagatt cctatggatc tgtcccagcc cccaaccatc accaagcagt cagtgaagga
      301 gcacatcgtg gatccccgtg ataacatctt gattgagtgt gaagcaaaag ggaaccctgc
      361 ccccagcttc cactggactc gcaacagtag gttcttcaac atcgccaagg acccccgggt
      421 gtcgatgagg aggaggtctg gtaccctggt gatcgacttc cgcagtggcg ggcggccaga
      481 ggagtatgag ggggaatacc agtgttttgc ccgcaacaag tttggcacgg ccctgtccaa
      541 taggatccgc ctgcaggtgt ccaaatctcc tctgtggccc aaggaaaacc tagaccctgt
      601 cgtcgttcaa gaaggtgctc ccttgacgct ccagtgcaac cccccacctg gacttccgtc
      661 cccagtcatc ttctggatga gcagctccat ggagcccatc acccaagaca agcgtgtgtc
      721 ccagggccat aacggagacc tgtacttctc taatgtgatg ctgcaggaca tgcagacgga
      781 ctacagctgc aatgcccgct tccacttcac ccacaccatc cagcagaaga acccattcaa
      841 cctcaaagtc cttaccaacc acccctataa tgactcgtcc ttaagaaacc accctgacat
      901 gtacagtgcc cgaggagttg cagaaagaac acccagcttc atgtatcccc agggcactgc
      961 aagcagtcag atggtgctgc gtggcatgga cctcctgctg gagtgcatcg cctccggggt
     1021 cccaacacca gacatcgcat ggtacaagaa aggtggggac ctcccgtctg acaaagccaa
     1081 gttcgagaac tttaacaagg ccctgcgtat caccaacgtg tccgaggaag actccgggga
     1141 gtatttctgc ctggcctcca acaagatggg cagcatccgg cacacgatct cggtgagagt
     1201 gaaggctgct ccctactggc tggacgaacc caagaacctt atcctggctc ctggcgagga
     1261 cgggagactg gtgtgtcgag ccaacgggaa ccccaagccc accgtccagt ggatggtgaa
     1321 tggggaacct ttgcaatcgg caccacccaa cccaaaccgt gaggtggccg gggacaccat
     1381 catcttccgg gacacccaga tcagcagcag ggccgtgtac cagtgcaaca cctccaacga
     1441 gcacggctac ctgctggcca acgccttcgt cagcgtgctg gacgtgccgc ctcggatgct
     1501 gtcaccccgg aaccagctca tcagggtgat cctgtacaac cggacgcggc tggactgccc
     1561 gttctttggg tctcccatcc ccacactccg atggtttaag aatgggcaag gaagcaacct
     1621 ggatggtggc aactaccatg tctacgagaa cggcagtctg gaaatcaaga tgatccgcaa
     1681 agaggaccaa ggcatctaca cctgtgttgc caccaacatc ctgggcaaag ctgagaacca
     1741 ggtccgcctg gaggtcaaag accccaccag gatctaccgg atgcctgagg accaggtcgc
     1801 caaaaggggc accacggtgc agctggagtg tcgcgtgaag cacgacccct ccctgaagct
     1861 cacagtgtac tggctgaagg acgacgagcc cctctacgtc gggaacagga tgaagaaaga
     1921 agaggactcc ctgaccatct ttggtgtggc cgagcgggac cagggtagct acacatgcgt
     1981 tgccagcacc gagctggacc aagacctggc caaggcctac ctgaccgtgc tagctgatca
     2041 ggccactcca actaaccgtt tggctgccct gcccaaagga cggccagacc gaccccggga
     2101 cctggagctc accgacctgg ccgagaggag cgtgagactg acctggatcc cgggggacga
     2161 taacaacagc cccatcacag actacgttgt ccagtttgaa gaggaccagt tccagccagg
     2221 ggtctggcat gaccattcca agttcccagg cagtgtcaac tcagccatcc tccagctgtc
     2281 cccctatgtc aactaccagt tccgggtcat tgccatcaat gaggtgggca gcagccatcc
     2341 cagcctcccg tccgagcgct accgaaccag tggagcaccc cctgagtcca acccctctga
     2401 tgtgaaggga gaggggacca gaaagaacaa catggagatc acgtggacgc cgatgaacgc
     2461 cacctccgcc tttggcccca acctgcgcta catcgtcaag tggcggcgga gagagacccg
     2521 agagacctgg aacaatgtca ctgtgtgggg ctcccgctat gtggtggggc agacccctgt
     2581 ctacgtgccc tatgagatcc gagtccaggc ggaaaatgac tttgggaagg gccctgaacc
     2641 agacactgtc atcggttact ccggagaaga tttacccagt gcccccaggc gtttccgagt
     2701 ccggcagccc aacctggaga caatcaacct ggaatgggat catccagaac accccaatgg
     2761 gatcctgatt ggatacactc tcaaatacgt ggcctttaat ggaaccaaag taggaaagca
     2821 gatagtggaa aacttctctc ccaatcagac caagttcacg atgcaaagag cagaccccgt
     2881 gtcgcgctac cgcttttccc tcagtgccag gacgcaggtg ggctctgggg aagcagtcac
     2941 agaggagtca ccagcacccc cgaatgaagc ctacaccaac aaccaggcgg acatcgccac
     3001 ccagggctgg ttcattgggc tcatgtgtgc cgtcgccctc ctggtgctga ccctgctcat
     3061 cgtctgtttc atcaagagga gtcgaggcgg caagtaccca gtgcgagaaa agaaggatgt
     3121 tccccttggc cctgaagacc ccaaagaaga ggatggctcc tttgattaca gtgacgagga
     3181 caacaagccc ttgcagggca gccagacgtc cctggatggc accatcaagc agcaggagag
     3241 tgatgacagc ctggtggact atggcgaggg cggcgaggga cagttcaatg aggacggctc
     3301 cttcatcggc cagtacacag tcaaaaagga caaggaagag acagagggca acgaaagctc
     3361 agaggccaca tctcctgtca acgccatcta ttctctggcc taacagagcc ccccaggcac
     3421 agccactacc ttgcaagtag aaggagggga gagggggaga cgagccactg cagacctacc
     3481 acaaagccgc caccaccttc agggacaagg gtacaacatg ggagtctgcc aagctgtgag
     3541 gaccagtgac cacccagcca accgcaagcc ccctcccgat gacccccccg gggtgccacc
     3601 agtgggcgag ctggagccat ggctaagctc agctggaggg agcccaggtc ccttgctcag
     3661 cctcacagcc acccccagcc tctacccaca ctgcctgccc ttgacctcaa cacacacact
     3721 caccagtttc tgttggttac ggtacttaac tcattgtctt tatttttgct ttgtgggtct
     3781 tctcctccag acccaacatc tccattttct tttccttttg aagaaatgtc cctggaaaaa
     3841 aagaaagaat aggtggattc tcccccagga aacttcagag atagataggc aaaaaaagga
     3901 ttgatccgta aacgaacaca tagaaaagct atagtattca aaccgcagct gggccaacgt
     3961 atttccgaag gatgcctttc tcgccagatg cctcccctgg cccccaaccc atccacctca
     4021 gccttgtcag ttgctgagct gggcttggct cctttctgga aaatgacagt atttttggca
     4081 gggagagggt aagcaggcct ccttgccttg ctctggtgca gttgggaggt gggcttacct
     4141 cttgctcctg gctcttaccc tgcccctgcc tctggagtgt ctgagacgaa agctgcaatg
     4201 actgaaggag tttaaggaac aggagcggga aggacttcag ctccagtgac tgtgtacctc
     4261 aagcagagga aaaccaggcg tccgtcccta gggagctttg cccacctcta gagagaagga
     4321 aagggctagg tttggacttc ctgcctcccc atcagtgaaa ctcaggatgt gggagagagg
     4381 accacaccca ctgcatccag agtagagggt gcctcccacc tggtcggggt ctgtgctgct
     4441 gccctccagg agatggaccc ctgcgatgtg aaggctgtgc cggtgtgctt gggggtggaa
     4501 agcactgctc cccctttcgt ctctagcaga tggcagctcc tgtatgatgt tgaaactggt
     4561 gttttatggc gtgtggatgg ggccctgctg cccccaagac tgagccggtg tgtcctttcc
     4621 ttagggtatt tacctatcag gagcccctcc ccgccccccc caacagtgct gtaaaagcct
     4681 ggcctgggag tgctcttcat atgccttatg cagctctgac ctgtccctgc agttcccagg
     4741 tttccagccc ctccctgcaa gccttgaagc ctccagtgac atcagtctca aggagaatgg
     4801 ggcggcctat gcaagcatca cagcagaacc agaagcagcc agtcaaaatg tgtcctgcag
     4861 cccgttgccc cagatggaga cactcgcaga cctgcagttc tctgagaccc aaggcactgc
     4921 cttcacgctc cccacctact ccattttgaa accaaaggta cctagcctca gagagagaaa
     4981 gagagagaga tctagagcct aagagtaacc cttcagctgt tgctgcagct aaagtcggtt
     5041 tcaggagggt gaagctgacc cccagtagtg gaccacctgc cacagacaca gcctctgatt
     5101 ggagcctcca gcttcttgcc aggcgacctg ggcaggagca aggctgtgtc cttcagagac
     5161 attcttaaag catcgtttgc cacatgttta agccgcaaag gtattagcaa tgcctgcatc
     5221 acttaataat cagtcagttg aaggtcaagc ccataggcac acctactctg tctgcaggtg
     5281 agaaaatgta gcccagagct gagccagtta tgttgtctga acccgagcga gtaactgtcc
     5341 tttggtccaa gccgtagcca ggtgtgctgc ctggaagcct ggggggaagc gctctcgtga
     5401 tgatggggga cagggcgaat agtaggggac tagggagcca gctcaggggt cccctcccct
     5461 gcctttcctc ctccacctgc ctggatactg ctgggcattc ctgtagccta gggaatgtca
     5521 gggaagtgtg cctgtgagct gaattaaagg accggccttt ccagaaaaca ctctggatct
     5581 gagcagagca gtcagcctct caggccctca ttccatattg cacaggacgc actagtaaac
     5641 tcattgcacc ggaagtaagc tctttgggca ggatggaccg taagatgtca cacccgtccc
     5701 tctgcctcag gaaagtcctc cacacaactg atgatggggg aagggctgac agtcgtggaa
     5761 ctgagtcttg ggacagagtg gcattggttg gcattggttg gcactgagtg cttaagccgc
     5821 cagtggctcc aggctcaaag ggaagagctt tggagcggga acttggtcct gaagactggt
     5881 caagacaggg gcagtcctgc tgcctgagcc tctcttctct gccccttggg ccaagttgct
     5941 gaacttgtct gtattttggt gcctctgtct cccctagtca gtccctcctt tgaaaacctg
     6001 tccccacgga ggggcatggg cccagctaaa ggagcgggga ggccagtgtc tggggagggc
     6061 accactgcgg ggccggggga cagctgcctc tcaccttgcc tgggtcgttg tgaatgggac
     6121 ccttctttcc ttaccttgct tttggggaga tggttgagtt tcagctgaaa agtagccact
     6181 tccctcgtcc gttgccttcg ccctgagggg tcagaggcat ttggtctacc cccttcctgg
     6241 caggtcccaa ggtctcagtc ccaaggtccg agaggctgct ggtgccagta ctaatcaccc
     6301 tgcaagggga ccgctgcctg ggcccagacg gtgctttcat ggtttccgtg catgcagtta
     6361 gccctggaaa aggggtggga acagacccac agatacctgt ggcttttcca gccgctggac
     6421 tgcctccctg cacacagccg gcagccacac cggcacactc acagcagacc tagtggcagg
     6481 cgcctttgca gggcggcact ttcgggggag caatccagat tacgaccgtg tcttgaagag
     6541 gatgagtcca tagccaggcc cgctggagat gaaacgtgaa gggctgtgtg gggtgccgtg
     6601 cacaactcag ggcaggggaa ggaggctgcc catgctgggc cccacttggg caattcttgg
     6661 aggcaaaacc aagagagaca gagtctgatc caaaggagag cgaatcttcc ccaggaacag
     6721 cacaggcagc agctttttaa ggctcctggg gctcctcttt gcagtatcag agccaagtca
     6781 cagagcatcc caaacagccc gtgtgacgag agccgtgggg atttcacaca cccttgcctc
     6841 agtctttgca aggctgctcc actaacacgc tgaaaaggcg aggcttcctg ggctctcagc
     6901 tggtggggcg ggtgtcagga atcacttctc agcgggaggg cacagagcac actccctgcc
     6961 cgtgatacct cggtcaccac tgcaccagcc cctgccacac acacacaagc ccgtgttgta
     7021 attcgttcca cccagctagg tccactggaa agaaatcacc ctgtggatcc gagttgatct
     7081 ttacatggtg gcttaagagt agcatatagg gagatccctg attaaaacag aaaatcagag
     7141 gagtccaacg aatgaaacaa agagcttgaa atgtcaggag gacactcagt gccccgggca
     7201 gagcccaaat cctgggcagc ccctccttga aaccaggcag gggccacccc atgggagttc
     7261 aagccaacct tgtggctgtc cccagcctgc ccagcccaag ccagggcagt gccctttcct
     7321 tccctcccct actaagaacg ggttctgaga aggaacagag ggaaaggagg acagctgtcc
     7381 agggaagcca ccatacccca ccacccagta tctcaagcca cacccaaaac cagtgcccct
     7441 ctagcagtac attagtatta aatggatgtt ttgtaacgat aaggatggaa gtgaaatagg
     7501 tacaaagctg tctagcttaa gacaggatca gatctcagca cgcagaagga tcacagagct
     7561 gatctgattg aaggtactca tcgtaagcta aaatccaggg aggtaaaggg acttgcccaa
     7621 ggtcacacag ctagtaaatc aaggtgaggt agggcttgag ctcaggcctt ctgactcctt
     7681 gttcagtgtt ctttcatctc actgcagctg ctgccttggg agcagtggtg ttacttaaga
     7741 tctggcctgc tggttcactg tctcccacgt ctctttccac gtctcccaca tccccataca
     7801 cctccacaga tgaaatcagt ggatttttct gagtcccagc tcagccagtc tgtgccagcc
     7861 tgtggtgaac cagccgtgct gttcagggga gacccaagcc aggagaagag agtgacgagc
     7921 tgattggtgt ttgccaccat gaagcctaga gtatccccta gggtggtgtc tctcgcttcg
     7981 tcgtaatgca tcgcgccccc agcatactgt gtccctcgga agagcgacgg ccacagggtg
     8041 ccgaggggca gcagggccca tggaagctcc ccccgacccc gggatttgct gggctggagg
     8101 tcagcacgtg taaagacttc agtgaagcaa taaatacaaa aatctgggag aagaaatcca
     8161 gaattttgtg cacttctctg tttctttttc aaaaaggatg cagatcaggt gaccctgccc
     8221 tgctctcctt tctgattccc aaattcgacg tcctcggtca gtgttgtccc tctgcccagc
     8281 tcccagctct ttgccaacct cacatcctcc tgcactgagc atcagttgtc tgtggcgtgg
     8341 ccaccttctg tcccggtccc accctcaccc atgctgggcc ctggaggacc tcttgccctt
     8401 cacctccctt caacacacac attttccggt ttgttccttt cagtggggaa atcttttccg
     8461 aatgtctcca tcccttccca cctacccaca cacccacaaa ttggtctgat cttttcttcc
     8521 attggttaaa tatttaactc accatggcac acctcgtttt aacccctctc acatcgtgtt
     8581 ctttcctttt tgcgagttgt tttgcattaa ccaacgttgt cagtgacaga tgcatatctg
     8641 agggtgtcac gctcgacctt cagcagggaa ggcttctggg tcgtgaggac catctaatat
     8701 gtggacttat aaacgactgc atgagcaatg aaaaggccaa attattcaga attttttttg
     8761 aatcactgta aaaaaaaaaa actgatttct tttgtataga gaacactaaa cgtataataa
     8821 aagttgttca
//
LOCUS       XM_032652083            5782 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neurofascin (NFASC), transcript variant
            X2, mRNA.
ACCESSION   XM_032652083
VERSION     XM_032652083.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5782
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5782
                     /gene="NFASC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763936"
     CDS             321..3509
                     /gene="NFASC"
                     /codon_start=1
                     /product="neurofascin isoform X2"
                     /protein_id="XP_032507974.1"
                     /db_xref="GeneID:116763936"
                     /translation="MARQQPPPWVHTAFLFCLLSLSGAIEIPMDLSQPPTITKQSVKE
                     HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR
                     PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP
                     GLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ
                     QKNPFNLKVLTNHPYNDSSLRNHPDMYSARGVAERTPSFMYPQGTASSQMVLRGMDLL
                     LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG
                     SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP
                     PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQL
                     IRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQG
                     IYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAKRGTTVQLECRVKHDPSLKLTV
                     YWLKDDEPLYVGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLGRP
                     DRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVN
                     SAILQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNM
                     EITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQ
                     AENDFGKGPEPDTVIGYSGEDLPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTL
                     KYVAFNGTKVGKQIVENFSPNQTKFTMQRADPVSRYRFSLSARTQVGSGEAVTEESPA
                     PPNEAYTNNQADIATQGWFIGLMCAVALLVLTLLIVCFIKRSRGGKYPVREKKDVPLG
                     PEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSF
                     IGQYTVKKDKEETEGNESSEATSPVNAIYSLA"
     misc_feature    423..707
                     /gene="NFASC"
                     /note="Immunoglobulin (Ig)-like domain of human
                     neurofascin (NF); member of the I-set of Ig superfamily
                     (IgSF) domains; Region: IgI_hNeurofascin_like; cd05875"
                     /db_xref="CDD:409459"
     misc_feature    423..437
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409459"
     misc_feature    450..464
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409459"
     misc_feature    477..500
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409459"
     misc_feature    516..533
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409459"
     misc_feature    540..548
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409459"
     misc_feature    567..578
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409459"
     misc_feature    591..605
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409459"
     misc_feature    642..668
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409459"
     misc_feature    675..707
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409459"
     misc_feature    732..1004
                     /gene="NFASC"
                     /note="Second immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; member
                     of the I-set of Ig superfamily (IgSF) domains; Region:
                     IgI_2_L1-CAM_like; cd05845"
                     /db_xref="CDD:409432"
     misc_feature    732..743
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409432"
     misc_feature    747..761
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409432"
     misc_feature    768..794
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409432"
     misc_feature    813..833
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409432"
     misc_feature    840..851
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409432"
     misc_feature    867..881
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409432"
     misc_feature    885..899
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409432"
     misc_feature    930..956
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409432"
     misc_feature    963..1004
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409432"
     misc_feature    1107..1355
                     /gene="NFASC"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; Region:
                     Ig3_L1-CAM_like; cd05731"
                     /db_xref="CDD:409394"
     misc_feature    1143..1157
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409394"
     misc_feature    1182..1196
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409394"
     misc_feature    1248..1262
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409394"
     misc_feature    1290..1307
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409394"
     misc_feature    1329..1340
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409394"
     misc_feature    1365..1631
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1413..1427
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1452..1466
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1524..1538
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1566..1583
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1605..1616
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1701..1907
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1734..1748
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1803..1817
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1845..1862
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1884..1895
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1935..2180
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1968..1982
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    2013..2024
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    2076..2090
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2118..2135
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2157..2168
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    2190..2462
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2190..2192,2388..2390,2433..2435)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    <2382..>3116
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    order(2436..2441,2445..2450)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2781..3056
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2781..2783,2982..2984,3027..3029)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(3030..3035,3039..3044)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    3180..3434
                     /gene="NFASC"
                     /note="Bravo-like intracellular region; Region:
                     Bravo_FIGEY; pfam13882"
                     /db_xref="CDD:464016"
ORIGIN      
        1 gcgcacgggc tggtctctgc cctaatgcgg cggctggcgg cgagaggcgc tgcaggggac
       61 tctggggaag tggcggcgcc ggcagcggac agcaccgact gcacccaggg ccggagcccg
      121 agcccttgca ggttgattga cttatgtgca atttgggacg ctggagtgtt ccttcccgct
      181 gcagactgga agggagcccc ctctggtgtt acaggaagga ggctgaatga ggcagagacg
      241 ctgagctctg tccgggaggc ccagttacag cggctggagg ctgtgggcca gggagcaggg
      301 agcgaggccc agtgctcagg atggccaggc agcagccacc gccctgggtc cacacagcct
      361 tcctcttctg cctgctcagc ctcagcgggg ccatcgagat tcctatggat ctgtcccagc
      421 ccccaaccat caccaagcag tcagtgaagg agcacatcgt ggatccccgt gataacatct
      481 tgattgagtg tgaagcaaaa gggaaccctg cccccagctt ccactggact cgcaacagta
      541 ggttcttcaa catcgccaag gacccccggg tgtcgatgag gaggaggtct ggtaccctgg
      601 tgatcgactt ccgcagtggc gggcggccag aggagtatga gggggaatac cagtgttttg
      661 cccgcaacaa gtttggcacg gccctgtcca ataggatccg cctgcaggtg tccaaatctc
      721 ctctgtggcc caaggaaaac ctagaccctg tcgtcgttca agaaggtgct cccttgacgc
      781 tccagtgcaa ccccccacct ggacttccgt ccccagtcat cttctggatg agcagctcca
      841 tggagcccat cacccaagac aagcgtgtgt cccagggcca taacggagac ctgtacttct
      901 ctaatgtgat gctgcaggac atgcagacgg actacagctg caatgcccgc ttccacttca
      961 cccacaccat ccagcagaag aacccattca acctcaaagt ccttaccaac cacccctata
     1021 atgactcgtc cttaagaaac caccctgaca tgtacagtgc ccgaggagtt gcagaaagaa
     1081 cacccagctt catgtatccc cagggcactg caagcagtca gatggtgctg cgtggcatgg
     1141 acctcctgct ggagtgcatc gcctccgggg tcccaacacc agacatcgca tggtacaaga
     1201 aaggtgggga cctcccgtct gacaaagcca agttcgagaa ctttaacaag gccctgcgta
     1261 tcaccaacgt gtccgaggaa gactccgggg agtatttctg cctggcctcc aacaagatgg
     1321 gcagcatccg gcacacgatc tcggtgagag tgaaggctgc tccctactgg ctggacgaac
     1381 ccaagaacct tatcctggct cctggcgagg acgggagact ggtgtgtcga gccaacggga
     1441 accccaagcc caccgtccag tggatggtga atggggaacc tttgcaatcg gcaccaccca
     1501 acccaaaccg tgaggtggcc ggggacacca tcatcttccg ggacacccag atcagcagca
     1561 gggccgtgta ccagtgcaac acctccaacg agcacggcta cctgctggcc aacgccttcg
     1621 tcagcgtgct ggacgtgccg cctcggatgc tgtcaccccg gaaccagctc atcagggtga
     1681 tcctgtacaa ccggacgcgg ctggactgcc cgttctttgg gtctcccatc cccacactcc
     1741 gatggtttaa gaatgggcaa ggaagcaacc tggatggtgg caactaccat gtctacgaga
     1801 acggcagtct ggaaatcaag atgatccgca aagaggacca aggcatctac acctgtgttg
     1861 ccaccaacat cctgggcaaa gctgagaacc aggtccgcct ggaggtcaaa gaccccacca
     1921 ggatctaccg gatgcctgag gaccaggtcg ccaaaagggg caccacggtg cagctggagt
     1981 gtcgcgtgaa gcacgacccc tccctgaagc tcacagtgta ctggctgaag gacgacgagc
     2041 ccctctacgt cgggaacagg atgaagaaag aagaggactc cctgaccatc tttggtgtgg
     2101 ccgagcggga ccagggtagc tacacatgcg ttgccagcac cgagctggac caagacctgg
     2161 ccaaggccta cctgaccgtg ctaggacggc cagaccgacc ccgggacctg gagctcaccg
     2221 acctggccga gaggagcgtg agactgacct ggatcccggg ggacgataac aacagcccca
     2281 tcacagacta cgttgtccag tttgaagagg accagttcca gccaggggtc tggcatgacc
     2341 attccaagtt cccaggcagt gtcaactcag ccatcctcca gctgtccccc tatgtcaact
     2401 accagttccg ggtcattgcc atcaatgagg tgggcagcag ccatcccagc ctcccgtccg
     2461 agcgctaccg aaccagtgga gcaccccctg agtccaaccc ctctgatgtg aagggagagg
     2521 ggaccagaaa gaacaacatg gagatcacgt ggacgccgat gaacgccacc tccgcctttg
     2581 gccccaacct gcgctacatc gtcaagtggc ggcggagaga gacccgagag acctggaaca
     2641 atgtcactgt gtggggctcc cgctatgtgg tggggcagac ccctgtctac gtgccctatg
     2701 agatccgagt ccaggcggaa aatgactttg ggaagggccc tgaaccagac actgtcatcg
     2761 gttactccgg agaagattta cccagtgccc ccaggcgttt ccgagtccgg cagcccaacc
     2821 tggagacaat caacctggaa tgggatcatc cagaacaccc caatgggatc ctgattggat
     2881 acactctcaa atacgtggcc tttaatggaa ccaaagtagg aaagcagata gtggaaaact
     2941 tctctcccaa tcagaccaag ttcacgatgc aaagagcaga ccccgtgtcg cgctaccgct
     3001 tttccctcag tgccaggacg caggtgggct ctggggaagc agtcacagag gagtcaccag
     3061 cacccccgaa tgaagcctac accaacaacc aggcggacat cgccacccag ggctggttca
     3121 ttgggctcat gtgtgccgtc gccctcctgg tgctgaccct gctcatcgtc tgtttcatca
     3181 agaggagtcg aggcggcaag tacccagtgc gagaaaagaa ggatgttccc cttggccctg
     3241 aagaccccaa agaagaggat ggctcctttg attacagtga cgaggacaac aagcccttgc
     3301 agggcagcca gacgtccctg gatggcacca tcaagcagca ggagagtgat gacagcctgg
     3361 tggactatgg cgagggcggc gagggacagt tcaatgagga cggctccttc atcggccagt
     3421 acacagtcaa aaaggacaag gaagagacag agggcaacga aagctcagag gccacatctc
     3481 ctgtcaacgc catctattct ctggcctaac agagcccccc aggcacagcc actaccttgc
     3541 aagtagaagg aggggagagg gggagacgag ccactgcaga cctaccacaa agccgccacc
     3601 accttcaggg acaagggtac aacatgggag tctgccaagc tgtgaggacc agtgaccacc
     3661 cagccaaccg caagccccct cccgatgacc cccccggggt gccaccagtg ggcgagctgg
     3721 agccatggct aagctcagct ggagggagcc caggtccctt gctcagcctc acagccaccc
     3781 ccagcctcta cccacactgc ctgcccttga cctcaacaca cacactcacc agtttctgtt
     3841 ggttacggta cttaactcat tgtctttatt tttgctttgt gggtcttctc ctccagaccc
     3901 aacatctcca ttttcttttc cttttgaaga aatgtccctg gaaaaaaaga aagaataggt
     3961 ggattctccc ccaggaaact tcagagatag ataggcaaaa aaaggattga tccgtaaacg
     4021 aacacataga aaagctatag tattcaaacc gcagctgggc caacgtattt ccgaaggatg
     4081 cctttctcgc cagatgcctc ccctggcccc caacccatcc acctcagcct tgtcagttgc
     4141 tgagctgggc ttggctcctt tctggaaaat gacagtattt ttggcaggga gagggtaagc
     4201 aggcctcctt gccttgctct ggtgcagttg ggaggtgggc ttacctcttg ctcctggctc
     4261 ttaccctgcc cctgcctctg gagtgtctga gacgaaagct gcaatgactg aaggagttta
     4321 aggaacagga gcgggaagga cttcagctcc agtgactgtg tacctcaagc agaggaaaac
     4381 caggcgtccg tccctaggga gctttgccca cctctagaga gaaggaaagg gctaggtttg
     4441 gacttcctgc ctccccatca gtgaaactca ggatgtggga gagaggacca cacccactgc
     4501 atccagagta gagggtgcct cccacctggt cggggtctgt gctgctgccc tccaggagat
     4561 ggacccctgc gatgtgaagg ctgtgccggt gtgcttgggg gtggaaagca ctgctccccc
     4621 tttcgtctct agcagatggc agctcctgta tgatgttgaa actggtgttt tatggcgtgt
     4681 ggatggggcc ctgctgcccc caagactgag ccggtgtgtc ctttccttag ggtatttacc
     4741 tatcaggagc ccctccccgc cccccccaac agtgctgtaa aagcctggcc tgggagtgct
     4801 cttcatatgc cttatgcagc tctgacctgt ccctgcagtt cccaggtttc cagcccctcc
     4861 ctgcaagcct tgaagcctcc agtgacatca gtctcaagga gaatggggcg gcctatgcaa
     4921 gcatcacagc agaaccagaa gcagccagtc aaaatgtgtc ctgcagcccg ttgccccaga
     4981 tggagacact cgcagacctg cagttctctg agacccaagg cactgccttc acgctcccca
     5041 cctactccat tttgaaacca aaggtaccta gcctcagaga gagaaagaga gagagatcta
     5101 gagcctaaga gtaacccttc agctgttgct gcagctaaag tcggtttcag gagggtgaag
     5161 ctgaccccca gtagtggacc acctgccaca gacacagcct ctgattggag cctccagctt
     5221 cttgccaggc gacctgggca ggagcaaggc tgtgtccttc agagacattc ttaaagcatc
     5281 gtttgccaca tgtttaagcc gcaaaggtat tagcaatgcc tgcatcactt aataatcagt
     5341 cagttgaagg tcaagcccat aggcacacct actctgtctg caggtgagaa aatgtagccc
     5401 agagctgagc cagttatgtt gtctgaaccc gagcgagtaa ctgtcctttg gtccaagccg
     5461 tagccaggtg tgctgcctgg aagcctgggg ggaagcgctc tcgtgatgat gggggacagg
     5521 gcgaatagta ggggactagg gagccagctc aggggtcccc tcccctgcct ttcctcctcc
     5581 acctgcctgg atactgctgg gcattcctgt agcctaggga atgtcaggga agtgtgcctg
     5641 tgagctgaat taaaggaccg gcctttccag aaaacactct ggatctgagc agagcagtca
     5701 gcctctcagg ccctcattcc atattgcaca ggacgcacta gtaaactcat tgcaccggaa
     5761 gtaagctctt tgggcaggat gg
//
LOCUS       XM_032652094            3352 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neurofascin (NFASC), transcript variant
            X3, mRNA.
ACCESSION   XM_032652094
VERSION     XM_032652094.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3352
                     /gene="NFASC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116763936"
     CDS             170..3352
                     /gene="NFASC"
                     /codon_start=1
                     /product="neurofascin isoform X3"
                     /protein_id="XP_032507985.1"
                     /db_xref="GeneID:116763936"
                     /translation="MARQQPPPWVHTAFLFCLLSLSGAIEIPMDLSQPPTITKQSVKE
                     HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR
                     PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP
                     GLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ
                     QKNPFNLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK
                     KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL
                     DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT
                     QISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFG
                     SPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQV
                     RLEVKDPTRIYRMPEDQVAKRGTTVQLECRVKHDPSLKLTVYWLKDDEPLYVGNRMKK
                     EEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTNRLAALPKGRPDR
                     PRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSA
                     ILQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEI
                     TWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAE
                     NDFGKGPEPDTVIGYSGEDLPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKY
                     VAFNGTKVGKQIVENFSPNQTKFTMQRADPVSRYRFSLSARTQVGSGEAVTEESPAPP
                     NEAYTNNQADIATQGWFIGLMCAVALLVLTLLIVCFIKRSRGGKYPVREKKDVPLGPE
                     DPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIG
                     QYTVKKDKEETEGNESSEATSPVNAIYSLA"
     misc_feature    272..556
                     /gene="NFASC"
                     /note="Immunoglobulin (Ig)-like domain of human
                     neurofascin (NF); member of the I-set of Ig superfamily
                     (IgSF) domains; Region: IgI_hNeurofascin_like; cd05875"
                     /db_xref="CDD:409459"
     misc_feature    272..286
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409459"
     misc_feature    299..313
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409459"
     misc_feature    326..349
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409459"
     misc_feature    365..382
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409459"
     misc_feature    389..397
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409459"
     misc_feature    416..427
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409459"
     misc_feature    440..454
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409459"
     misc_feature    491..517
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409459"
     misc_feature    524..556
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409459"
     misc_feature    581..853
                     /gene="NFASC"
                     /note="Second immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; member
                     of the I-set of Ig superfamily (IgSF) domains; Region:
                     IgI_2_L1-CAM_like; cd05845"
                     /db_xref="CDD:409432"
     misc_feature    581..592
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409432"
     misc_feature    596..610
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409432"
     misc_feature    617..643
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409432"
     misc_feature    662..682
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409432"
     misc_feature    689..700
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409432"
     misc_feature    716..730
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409432"
     misc_feature    734..748
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409432"
     misc_feature    779..805
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409432"
     misc_feature    812..853
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409432"
     misc_feature    905..1153
                     /gene="NFASC"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; Region:
                     Ig3_L1-CAM_like; cd05731"
                     /db_xref="CDD:409394"
     misc_feature    941..955
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409394"
     misc_feature    980..994
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409394"
     misc_feature    1046..1060
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409394"
     misc_feature    1088..1105
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409394"
     misc_feature    1127..1138
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409394"
     misc_feature    1163..1429
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1211..1225
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1250..1264
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1322..1336
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1364..1381
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1403..1414
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1499..1705
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1532..1546
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1601..1615
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1643..1660
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1682..1693
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1733..1978
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1766..1780
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1811..1822
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1874..1888
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1916..1933
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1955..1966
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    2033..2305
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2033..2035,2231..2233,2276..2278)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    <2225..>2959
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    order(2279..2284,2288..2293)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2624..2899
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2624..2626,2825..2827,2870..2872)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(2873..2878,2882..2887)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    3023..3277
                     /gene="NFASC"
                     /note="Bravo-like intracellular region; Region:
                     Bravo_FIGEY; pfam13882"
                     /db_xref="CDD:464016"
ORIGIN      
        1 tttgggacgc tggagtgttc cttcccgctg cagactggaa gggagccccc tctggtgtta
       61 caggaaggag gctgaatgag gcagagacgc tgagctctgt ccgggaggcc cagttacagc
      121 ggctggaggc tgtgggccag ggagcaggga gcgaggccca gtgctcagga tggccaggca
      181 gcagccaccg ccctgggtcc acacagcctt cctcttctgc ctgctcagcc tcagcggggc
      241 catcgagatt cctatggatc tgtcccagcc cccaaccatc accaagcagt cagtgaagga
      301 gcacatcgtg gatccccgtg ataacatctt gattgagtgt gaagcaaaag ggaaccctgc
      361 ccccagcttc cactggactc gcaacagtag gttcttcaac atcgccaagg acccccgggt
      421 gtcgatgagg aggaggtctg gtaccctggt gatcgacttc cgcagtggcg ggcggccaga
      481 ggagtatgag ggggaatacc agtgttttgc ccgcaacaag tttggcacgg ccctgtccaa
      541 taggatccgc ctgcaggtgt ccaaatctcc tctgtggccc aaggaaaacc tagaccctgt
      601 cgtcgttcaa gaaggtgctc ccttgacgct ccagtgcaac cccccacctg gacttccgtc
      661 cccagtcatc ttctggatga gcagctccat ggagcccatc acccaagaca agcgtgtgtc
      721 ccagggccat aacggagacc tgtacttctc taatgtgatg ctgcaggaca tgcagacgga
      781 ctacagctgc aatgcccgct tccacttcac ccacaccatc cagcagaaga acccattcaa
      841 cctcaaagtc cttaccaccc gaggagttgc agaaagaaca cccagcttca tgtatcccca
      901 gggcactgca agcagtcaga tggtgctgcg tggcatggac ctcctgctgg agtgcatcgc
      961 ctccggggtc ccaacaccag acatcgcatg gtacaagaaa ggtggggacc tcccgtctga
     1021 caaagccaag ttcgagaact ttaacaaggc cctgcgtatc accaacgtgt ccgaggaaga
     1081 ctccggggag tatttctgcc tggcctccaa caagatgggc agcatccggc acacgatctc
     1141 ggtgagagtg aaggctgctc cctactggct ggacgaaccc aagaacctta tcctggctcc
     1201 tggcgaggac gggagactgg tgtgtcgagc caacgggaac cccaagccca ccgtccagtg
     1261 gatggtgaat ggggaacctt tgcaatcggc accacccaac ccaaaccgtg aggtggccgg
     1321 ggacaccatc atcttccggg acacccagat cagcagcagg gccgtgtacc agtgcaacac
     1381 ctccaacgag cacggctacc tgctggccaa cgccttcgtc agcgtgctgg acgtgccgcc
     1441 tcggatgctg tcaccccgga accagctcat cagggtgatc ctgtacaacc ggacgcggct
     1501 ggactgcccg ttctttgggt ctcccatccc cacactccga tggtttaaga atgggcaagg
     1561 aagcaacctg gatggtggca actaccatgt ctacgagaac ggcagtctgg aaatcaagat
     1621 gatccgcaaa gaggaccaag gcatctacac ctgtgttgcc accaacatcc tgggcaaagc
     1681 tgagaaccag gtccgcctgg aggtcaaaga ccccaccagg atctaccgga tgcctgagga
     1741 ccaggtcgcc aaaaggggca ccacggtgca gctggagtgt cgcgtgaagc acgacccctc
     1801 cctgaagctc acagtgtact ggctgaagga cgacgagccc ctctacgtcg ggaacaggat
     1861 gaagaaagaa gaggactccc tgaccatctt tggtgtggcc gagcgggacc agggtagcta
     1921 cacatgcgtt gccagcaccg agctggacca agacctggcc aaggcctacc tgaccgtgct
     1981 agctgatcag gccactccaa ctaaccgttt ggctgccctg cccaaaggac ggccagaccg
     2041 accccgggac ctggagctca ccgacctggc cgagaggagc gtgagactga cctggatccc
     2101 gggggacgat aacaacagcc ccatcacaga ctacgttgtc cagtttgaag aggaccagtt
     2161 ccagccaggg gtctggcatg accattccaa gttcccaggc agtgtcaact cagccatcct
     2221 ccagctgtcc ccctatgtca actaccagtt ccgggtcatt gccatcaatg aggtgggcag
     2281 cagccatccc agcctcccgt ccgagcgcta ccgaaccagt ggagcacccc ctgagtccaa
     2341 cccctctgat gtgaagggag aggggaccag aaagaacaac atggagatca cgtggacgcc
     2401 gatgaacgcc acctccgcct ttggccccaa cctgcgctac atcgtcaagt ggcggcggag
     2461 agagacccga gagacctgga acaatgtcac tgtgtggggc tcccgctatg tggtggggca
     2521 gacccctgtc tacgtgccct atgagatccg agtccaggcg gaaaatgact ttgggaaggg
     2581 ccctgaacca gacactgtca tcggttactc cggagaagat ttacccagtg cccccaggcg
     2641 tttccgagtc cggcagccca acctggagac aatcaacctg gaatgggatc atccagaaca
     2701 ccccaatggg atcctgattg gatacactct caaatacgtg gcctttaatg gaaccaaagt
     2761 aggaaagcag atagtggaaa acttctctcc caatcagacc aagttcacga tgcaaagagc
     2821 agaccccgtg tcgcgctacc gcttttccct cagtgccagg acgcaggtgg gctctgggga
     2881 agcagtcaca gaggagtcac cagcaccccc gaatgaagcc tacaccaaca accaggcgga
     2941 catcgccacc cagggctggt tcattgggct catgtgtgcc gtcgccctcc tggtgctgac
     3001 cctgctcatc gtctgtttca tcaagaggag tcgaggcggc aagtacccag tgcgagaaaa
     3061 gaaggatgtt ccccttggcc ctgaagaccc caaagaagag gatggctcct ttgattacag
     3121 tgacgaggac aacaagccct tgcagggcag ccagacgtcc ctggatggca ccatcaagca
     3181 gcaggagagt gatgacagcc tggtggacta tggcgagggc ggcgagggac agttcaatga
     3241 ggacggctcc ttcatcggcc agtacacagt caaaaaggac aaggaagaga cagagggcaa
     3301 cgaaagctca gaggccacat ctcctgtcaa cgccatctat tctctggcct aa
//
LOCUS       XM_032652104            8734 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neurofascin (NFASC), transcript variant
            X4, mRNA.
ACCESSION   XM_032652104
VERSION     XM_032652104.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8734
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8734
                     /gene="NFASC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 10 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763936"
     CDS             170..3307
                     /gene="NFASC"
                     /codon_start=1
                     /product="neurofascin isoform X4"
                     /protein_id="XP_032507995.1"
                     /db_xref="GeneID:116763936"
                     /translation="MARQQPPPWVHTAFLFCLLSLSGAIEIPMDLSQPPTITKQSVKE
                     HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR
                     PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP
                     GLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ
                     QKNPFNLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK
                     KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL
                     DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT
                     QISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFG
                     SPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQV
                     RLEVKDPTRIYRMPEDQVAKRGTTVQLECRVKHDPSLKLTVYWLKDDEPLYVGNRMKK
                     EEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLGRPDRPRDLELTDLAERSVR
                     LTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSAILQLSPYVNYQFRVI
                     AINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEITWTPMNATSAFGPNL
                     RYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAENDFGKGPEPDTVIGY
                     SGEDLPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVGKQIVEN
                     FSPNQTKFTMQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEAYTNNQADIATQG
                     WFIGLMCAVALLVLTLLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDED
                     NKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGNE
                     SSEATSPVNAIYSLA"
     misc_feature    272..556
                     /gene="NFASC"
                     /note="Immunoglobulin (Ig)-like domain of human
                     neurofascin (NF); member of the I-set of Ig superfamily
                     (IgSF) domains; Region: IgI_hNeurofascin_like; cd05875"
                     /db_xref="CDD:409459"
     misc_feature    272..286
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409459"
     misc_feature    299..313
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409459"
     misc_feature    326..349
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409459"
     misc_feature    365..382
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409459"
     misc_feature    389..397
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409459"
     misc_feature    416..427
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409459"
     misc_feature    440..454
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409459"
     misc_feature    491..517
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409459"
     misc_feature    524..556
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409459"
     misc_feature    581..853
                     /gene="NFASC"
                     /note="Second immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; member
                     of the I-set of Ig superfamily (IgSF) domains; Region:
                     IgI_2_L1-CAM_like; cd05845"
                     /db_xref="CDD:409432"
     misc_feature    581..592
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409432"
     misc_feature    596..610
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409432"
     misc_feature    617..643
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409432"
     misc_feature    662..682
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409432"
     misc_feature    689..700
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409432"
     misc_feature    716..730
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409432"
     misc_feature    734..748
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409432"
     misc_feature    779..805
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409432"
     misc_feature    812..853
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409432"
     misc_feature    905..1153
                     /gene="NFASC"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; Region:
                     Ig3_L1-CAM_like; cd05731"
                     /db_xref="CDD:409394"
     misc_feature    941..955
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409394"
     misc_feature    980..994
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409394"
     misc_feature    1046..1060
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409394"
     misc_feature    1088..1105
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409394"
     misc_feature    1127..1138
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409394"
     misc_feature    1163..1429
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1211..1225
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1250..1264
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1322..1336
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1364..1381
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1403..1414
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1499..1705
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1532..1546
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1601..1615
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1643..1660
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1682..1693
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1733..1978
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1766..1780
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1811..1822
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1874..1888
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1916..1933
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1955..1966
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1988..2260
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1988..1990,2186..2188,2231..2233)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    <2180..>2914
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    order(2234..2239,2243..2248)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2579..2854
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2579..2581,2780..2782,2825..2827)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(2828..2833,2837..2842)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2978..3232
                     /gene="NFASC"
                     /note="Bravo-like intracellular region; Region:
                     Bravo_FIGEY; pfam13882"
                     /db_xref="CDD:464016"
ORIGIN      
        1 tttgggacgc tggagtgttc cttcccgctg cagactggaa gggagccccc tctggtgtta
       61 caggaaggag gctgaatgag gcagagacgc tgagctctgt ccgggaggcc cagttacagc
      121 ggctggaggc tgtgggccag ggagcaggga gcgaggccca gtgctcagga tggccaggca
      181 gcagccaccg ccctgggtcc acacagcctt cctcttctgc ctgctcagcc tcagcggggc
      241 catcgagatt cctatggatc tgtcccagcc cccaaccatc accaagcagt cagtgaagga
      301 gcacatcgtg gatccccgtg ataacatctt gattgagtgt gaagcaaaag ggaaccctgc
      361 ccccagcttc cactggactc gcaacagtag gttcttcaac atcgccaagg acccccgggt
      421 gtcgatgagg aggaggtctg gtaccctggt gatcgacttc cgcagtggcg ggcggccaga
      481 ggagtatgag ggggaatacc agtgttttgc ccgcaacaag tttggcacgg ccctgtccaa
      541 taggatccgc ctgcaggtgt ccaaatctcc tctgtggccc aaggaaaacc tagaccctgt
      601 cgtcgttcaa gaaggtgctc ccttgacgct ccagtgcaac cccccacctg gacttccgtc
      661 cccagtcatc ttctggatga gcagctccat ggagcccatc acccaagaca agcgtgtgtc
      721 ccagggccat aacggagacc tgtacttctc taatgtgatg ctgcaggaca tgcagacgga
      781 ctacagctgc aatgcccgct tccacttcac ccacaccatc cagcagaaga acccattcaa
      841 cctcaaagtc cttaccaccc gaggagttgc agaaagaaca cccagcttca tgtatcccca
      901 gggcactgca agcagtcaga tggtgctgcg tggcatggac ctcctgctgg agtgcatcgc
      961 ctccggggtc ccaacaccag acatcgcatg gtacaagaaa ggtggggacc tcccgtctga
     1021 caaagccaag ttcgagaact ttaacaaggc cctgcgtatc accaacgtgt ccgaggaaga
     1081 ctccggggag tatttctgcc tggcctccaa caagatgggc agcatccggc acacgatctc
     1141 ggtgagagtg aaggctgctc cctactggct ggacgaaccc aagaacctta tcctggctcc
     1201 tggcgaggac gggagactgg tgtgtcgagc caacgggaac cccaagccca ccgtccagtg
     1261 gatggtgaat ggggaacctt tgcaatcggc accacccaac ccaaaccgtg aggtggccgg
     1321 ggacaccatc atcttccggg acacccagat cagcagcagg gccgtgtacc agtgcaacac
     1381 ctccaacgag cacggctacc tgctggccaa cgccttcgtc agcgtgctgg acgtgccgcc
     1441 tcggatgctg tcaccccgga accagctcat cagggtgatc ctgtacaacc ggacgcggct
     1501 ggactgcccg ttctttgggt ctcccatccc cacactccga tggtttaaga atgggcaagg
     1561 aagcaacctg gatggtggca actaccatgt ctacgagaac ggcagtctgg aaatcaagat
     1621 gatccgcaaa gaggaccaag gcatctacac ctgtgttgcc accaacatcc tgggcaaagc
     1681 tgagaaccag gtccgcctgg aggtcaaaga ccccaccagg atctaccgga tgcctgagga
     1741 ccaggtcgcc aaaaggggca ccacggtgca gctggagtgt cgcgtgaagc acgacccctc
     1801 cctgaagctc acagtgtact ggctgaagga cgacgagccc ctctacgtcg ggaacaggat
     1861 gaagaaagaa gaggactccc tgaccatctt tggtgtggcc gagcgggacc agggtagcta
     1921 cacatgcgtt gccagcaccg agctggacca agacctggcc aaggcctacc tgaccgtgct
     1981 aggacggcca gaccgacccc gggacctgga gctcaccgac ctggccgaga ggagcgtgag
     2041 actgacctgg atcccggggg acgataacaa cagccccatc acagactacg ttgtccagtt
     2101 tgaagaggac cagttccagc caggggtctg gcatgaccat tccaagttcc caggcagtgt
     2161 caactcagcc atcctccagc tgtcccccta tgtcaactac cagttccggg tcattgccat
     2221 caatgaggtg ggcagcagcc atcccagcct cccgtccgag cgctaccgaa ccagtggagc
     2281 accccctgag tccaacccct ctgatgtgaa gggagagggg accagaaaga acaacatgga
     2341 gatcacgtgg acgccgatga acgccacctc cgcctttggc cccaacctgc gctacatcgt
     2401 caagtggcgg cggagagaga cccgagagac ctggaacaat gtcactgtgt ggggctcccg
     2461 ctatgtggtg gggcagaccc ctgtctacgt gccctatgag atccgagtcc aggcggaaaa
     2521 tgactttggg aagggccctg aaccagacac tgtcatcggt tactccggag aagatttacc
     2581 cagtgccccc aggcgtttcc gagtccggca gcccaacctg gagacaatca acctggaatg
     2641 ggatcatcca gaacacccca atgggatcct gattggatac actctcaaat acgtggcctt
     2701 taatggaacc aaagtaggaa agcagatagt ggaaaacttc tctcccaatc agaccaagtt
     2761 cacgatgcaa agagcagacc ccgtgtcgcg ctaccgcttt tccctcagtg ccaggacgca
     2821 ggtgggctct ggggaagcag tcacagagga gtcaccagca cccccgaatg aagcctacac
     2881 caacaaccag gcggacatcg ccacccaggg ctggttcatt gggctcatgt gtgccgtcgc
     2941 cctcctggtg ctgaccctgc tcatcgtctg tttcatcaag aggagtcgag gcggcaagta
     3001 cccagtgcga gaaaagaagg atgttcccct tggccctgaa gaccccaaag aagaggatgg
     3061 ctcctttgat tacagtgacg aggacaacaa gcccttgcag ggcagccaga cgtccctgga
     3121 tggcaccatc aagcagcagg agagtgatga cagcctggtg gactatggcg agggcggcga
     3181 gggacagttc aatgaggacg gctccttcat cggccagtac acagtcaaaa aggacaagga
     3241 agagacagag ggcaacgaaa gctcagaggc cacatctcct gtcaacgcca tctattctct
     3301 ggcctaacag agccccccag gcacagccac taccttgcaa gtagaaggag gggagagggg
     3361 gagacgagcc actgcagacc taccacaaag ccgccaccac cttcagggac aagggtacaa
     3421 catgggagtc tgccaagctg tgaggaccag tgaccaccca gccaaccgca agccccctcc
     3481 cgatgacccc cccggggtgc caccagtggg cgagctggag ccatggctaa gctcagctgg
     3541 agggagccca ggtcccttgc tcagcctcac agccaccccc agcctctacc cacactgcct
     3601 gcccttgacc tcaacacaca cactcaccag tttctgttgg ttacggtact taactcattg
     3661 tctttatttt tgctttgtgg gtcttctcct ccagacccaa catctccatt ttcttttcct
     3721 tttgaagaaa tgtccctgga aaaaaagaaa gaataggtgg attctccccc aggaaacttc
     3781 agagatagat aggcaaaaaa aggattgatc cgtaaacgaa cacatagaaa agctatagta
     3841 ttcaaaccgc agctgggcca acgtatttcc gaaggatgcc tttctcgcca gatgcctccc
     3901 ctggccccca acccatccac ctcagccttg tcagttgctg agctgggctt ggctcctttc
     3961 tggaaaatga cagtattttt ggcagggaga gggtaagcag gcctccttgc cttgctctgg
     4021 tgcagttggg aggtgggctt acctcttgct cctggctctt accctgcccc tgcctctgga
     4081 gtgtctgaga cgaaagctgc aatgactgaa ggagtttaag gaacaggagc gggaaggact
     4141 tcagctccag tgactgtgta cctcaagcag aggaaaacca ggcgtccgtc cctagggagc
     4201 tttgcccacc tctagagaga aggaaagggc taggtttgga cttcctgcct ccccatcagt
     4261 gaaactcagg atgtgggaga gaggaccaca cccactgcat ccagagtaga gggtgcctcc
     4321 cacctggtcg gggtctgtgc tgctgccctc caggagatgg acccctgcga tgtgaaggct
     4381 gtgccggtgt gcttgggggt ggaaagcact gctccccctt tcgtctctag cagatggcag
     4441 ctcctgtatg atgttgaaac tggtgtttta tggcgtgtgg atggggccct gctgccccca
     4501 agactgagcc ggtgtgtcct ttccttaggg tatttaccta tcaggagccc ctccccgccc
     4561 cccccaacag tgctgtaaaa gcctggcctg ggagtgctct tcatatgcct tatgcagctc
     4621 tgacctgtcc ctgcagttcc caggtttcca gcccctccct gcaagccttg aagcctccag
     4681 tgacatcagt ctcaaggaga atggggcggc ctatgcaagc atcacagcag aaccagaagc
     4741 agccagtcaa aatgtgtcct gcagcccgtt gccccagatg gagacactcg cagacctgca
     4801 gttctctgag acccaaggca ctgccttcac gctccccacc tactccattt tgaaaccaaa
     4861 ggtacctagc ctcagagaga gaaagagaga gagatctaga gcctaagagt aacccttcag
     4921 ctgttgctgc agctaaagtc ggtttcagga gggtgaagct gacccccagt agtggaccac
     4981 ctgccacaga cacagcctct gattggagcc tccagcttct tgccaggcga cctgggcagg
     5041 agcaaggctg tgtccttcag agacattctt aaagcatcgt ttgccacatg tttaagccgc
     5101 aaaggtatta gcaatgcctg catcacttaa taatcagtca gttgaaggtc aagcccatag
     5161 gcacacctac tctgtctgca ggtgagaaaa tgtagcccag agctgagcca gttatgttgt
     5221 ctgaacccga gcgagtaact gtcctttggt ccaagccgta gccaggtgtg ctgcctggaa
     5281 gcctgggggg aagcgctctc gtgatgatgg gggacagggc gaatagtagg ggactaggga
     5341 gccagctcag gggtcccctc ccctgccttt cctcctccac ctgcctggat actgctgggc
     5401 attcctgtag cctagggaat gtcagggaag tgtgcctgtg agctgaatta aaggaccggc
     5461 ctttccagaa aacactctgg atctgagcag agcagtcagc ctctcaggcc ctcattccat
     5521 attgcacagg acgcactagt aaactcattg caccggaagt aagctctttg ggcaggatgg
     5581 accgtaagat gtcacacccg tccctctgcc tcaggaaagt cctccacaca actgatgatg
     5641 ggggaagggc tgacagtcgt ggaactgagt cttgggacag agtggcattg gttggcattg
     5701 gttggcactg agtgcttaag ccgccagtgg ctccaggctc aaagggaaga gctttggagc
     5761 gggaacttgg tcctgaagac tggtcaagac aggggcagtc ctgctgcctg agcctctctt
     5821 ctctgcccct tgggccaagt tgctgaactt gtctgtattt tggtgcctct gtctccccta
     5881 gtcagtccct cctttgaaaa cctgtcccca cggaggggca tgggcccagc taaaggagcg
     5941 gggaggccag tgtctgggga gggcaccact gcggggccgg gggacagctg cctctcacct
     6001 tgcctgggtc gttgtgaatg ggacccttct ttccttacct tgcttttggg gagatggttg
     6061 agtttcagct gaaaagtagc cacttccctc gtccgttgcc ttcgccctga ggggtcagag
     6121 gcatttggtc tacccccttc ctggcaggtc ccaaggtctc agtcccaagg tccgagaggc
     6181 tgctggtgcc agtactaatc accctgcaag gggaccgctg cctgggccca gacggtgctt
     6241 tcatggtttc cgtgcatgca gttagccctg gaaaaggggt gggaacagac ccacagatac
     6301 ctgtggcttt tccagccgct ggactgcctc cctgcacaca gccggcagcc acaccggcac
     6361 actcacagca gacctagtgg caggcgcctt tgcagggcgg cactttcggg ggagcaatcc
     6421 agattacgac cgtgtcttga agaggatgag tccatagcca ggcccgctgg agatgaaacg
     6481 tgaagggctg tgtggggtgc cgtgcacaac tcagggcagg ggaaggaggc tgcccatgct
     6541 gggccccact tgggcaattc ttggaggcaa aaccaagaga gacagagtct gatccaaagg
     6601 agagcgaatc ttccccagga acagcacagg cagcagcttt ttaaggctcc tggggctcct
     6661 ctttgcagta tcagagccaa gtcacagagc atcccaaaca gcccgtgtga cgagagccgt
     6721 ggggatttca cacacccttg cctcagtctt tgcaaggctg ctccactaac acgctgaaaa
     6781 ggcgaggctt cctgggctct cagctggtgg ggcgggtgtc aggaatcact tctcagcggg
     6841 agggcacaga gcacactccc tgcccgtgat acctcggtca ccactgcacc agcccctgcc
     6901 acacacacac aagcccgtgt tgtaattcgt tccacccagc taggtccact ggaaagaaat
     6961 caccctgtgg atccgagttg atctttacat ggtggcttaa gagtagcata tagggagatc
     7021 cctgattaaa acagaaaatc agaggagtcc aacgaatgaa acaaagagct tgaaatgtca
     7081 ggaggacact cagtgccccg ggcagagccc aaatcctggg cagcccctcc ttgaaaccag
     7141 gcaggggcca ccccatggga gttcaagcca accttgtggc tgtccccagc ctgcccagcc
     7201 caagccaggg cagtgccctt tccttccctc ccctactaag aacgggttct gagaaggaac
     7261 agagggaaag gaggacagct gtccagggaa gccaccatac cccaccaccc agtatctcaa
     7321 gccacaccca aaaccagtgc ccctctagca gtacattagt attaaatgga tgttttgtaa
     7381 cgataaggat ggaagtgaaa taggtacaaa gctgtctagc ttaagacagg atcagatctc
     7441 agcacgcaga aggatcacag agctgatctg attgaaggta ctcatcgtaa gctaaaatcc
     7501 agggaggtaa agggacttgc ccaaggtcac acagctagta aatcaaggtg aggtagggct
     7561 tgagctcagg ccttctgact ccttgttcag tgttctttca tctcactgca gctgctgcct
     7621 tgggagcagt ggtgttactt aagatctggc ctgctggttc actgtctccc acgtctcttt
     7681 ccacgtctcc cacatcccca tacacctcca cagatgaaat cagtggattt ttctgagtcc
     7741 cagctcagcc agtctgtgcc agcctgtggt gaaccagccg tgctgttcag gggagaccca
     7801 agccaggaga agagagtgac gagctgattg gtgtttgcca ccatgaagcc tagagtatcc
     7861 cctagggtgg tgtctctcgc ttcgtcgtaa tgcatcgcgc ccccagcata ctgtgtccct
     7921 cggaagagcg acggccacag ggtgccgagg ggcagcaggg cccatggaag ctccccccga
     7981 ccccgggatt tgctgggctg gaggtcagca cgtgtaaaga cttcagtgaa gcaataaata
     8041 caaaaatctg ggagaagaaa tccagaattt tgtgcacttc tctgtttctt tttcaaaaag
     8101 gatgcagatc aggtgaccct gccctgctct cctttctgat tcccaaattc gacgtcctcg
     8161 gtcagtgttg tccctctgcc cagctcccag ctctttgcca acctcacatc ctcctgcact
     8221 gagcatcagt tgtctgtggc gtggccacct tctgtcccgg tcccaccctc acccatgctg
     8281 ggccctggag gacctcttgc ccttcacctc ccttcaacac acacattttc cggtttgttc
     8341 ctttcagtgg ggaaatcttt tccgaatgtc tccatccctt cccacctacc cacacaccca
     8401 caaattggtc tgatcttttc ttccattggt taaatattta actcaccatg gcacacctcg
     8461 ttttaacccc tctcacatcg tgttctttcc tttttgcgag ttgttttgca ttaaccaacg
     8521 ttgtcagtga cagatgcata tctgagggtg tcacgctcga ccttcagcag ggaaggcttc
     8581 tgggtcgtga ggaccatcta atatgtggac ttataaacga ctgcatgagc aatgaaaagg
     8641 ccaaattatt cagaattttt tttgaatcac tgtaaaaaaa aaaaactgat ttcttttgta
     8701 tagagaacac taaacgtata ataaaagttg ttca
//
LOCUS       XM_032652115            2498 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neurofascin (NFASC), transcript variant
            X5, mRNA.
ACCESSION   XM_032652115
VERSION     XM_032652115.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2498
                     /gene="NFASC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763936"
     CDS             321..2162
                     /gene="NFASC"
                     /codon_start=1
                     /product="neurofascin isoform X5"
                     /protein_id="XP_032508006.1"
                     /db_xref="GeneID:116763936"
                     /translation="MARQQPPPWVHTAFLFCLLSLSGAIEIPMDLSQPPTITKQSVKE
                     HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR
                     PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP
                     GLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ
                     QKNPFNLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK
                     KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL
                     DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT
                     QISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFG
                     SPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQV
                     RLEVKDPTRIYRMPEDQVAKRGTTVQLECRVKHDPSLKLTVYWLKDDEPLYVGNRMKK
                     EEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLGNCRCPHWR"
     misc_feature    423..707
                     /gene="NFASC"
                     /note="Immunoglobulin (Ig)-like domain of human
                     neurofascin (NF); member of the I-set of Ig superfamily
                     (IgSF) domains; Region: IgI_hNeurofascin_like; cd05875"
                     /db_xref="CDD:409459"
     misc_feature    423..437
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409459"
     misc_feature    450..464
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409459"
     misc_feature    477..500
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409459"
     misc_feature    516..533
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409459"
     misc_feature    540..548
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409459"
     misc_feature    567..578
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409459"
     misc_feature    591..605
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409459"
     misc_feature    642..668
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409459"
     misc_feature    675..707
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409459"
     misc_feature    732..1004
                     /gene="NFASC"
                     /note="Second immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; member
                     of the I-set of Ig superfamily (IgSF) domains; Region:
                     IgI_2_L1-CAM_like; cd05845"
                     /db_xref="CDD:409432"
     misc_feature    732..743
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409432"
     misc_feature    747..761
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409432"
     misc_feature    768..794
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409432"
     misc_feature    813..833
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409432"
     misc_feature    840..851
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409432"
     misc_feature    867..881
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409432"
     misc_feature    885..899
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409432"
     misc_feature    930..956
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409432"
     misc_feature    963..1004
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409432"
     misc_feature    1056..1304
                     /gene="NFASC"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; Region:
                     Ig3_L1-CAM_like; cd05731"
                     /db_xref="CDD:409394"
     misc_feature    1092..1106
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409394"
     misc_feature    1131..1145
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409394"
     misc_feature    1197..1211
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409394"
     misc_feature    1239..1256
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409394"
     misc_feature    1278..1289
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409394"
     misc_feature    1314..1580
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1362..1376
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1401..1415
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1473..1487
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1515..1532
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1554..1565
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1650..1856
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1683..1697
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1752..1766
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1794..1811
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1833..1844
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1884..2129
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1917..1931
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1962..1973
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    2025..2039
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2067..2084
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2106..2117
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gcgcacgggc tggtctctgc cctaatgcgg cggctggcgg cgagaggcgc tgcaggggac
       61 tctggggaag tggcggcgcc ggcagcggac agcaccgact gcacccaggg ccggagcccg
      121 agcccttgca ggttgattga cttatgtgca atttgggacg ctggagtgtt ccttcccgct
      181 gcagactgga agggagcccc ctctggtgtt acaggaagga ggctgaatga ggcagagacg
      241 ctgagctctg tccgggaggc ccagttacag cggctggagg ctgtgggcca gggagcaggg
      301 agcgaggccc agtgctcagg atggccaggc agcagccacc gccctgggtc cacacagcct
      361 tcctcttctg cctgctcagc ctcagcgggg ccatcgagat tcctatggat ctgtcccagc
      421 ccccaaccat caccaagcag tcagtgaagg agcacatcgt ggatccccgt gataacatct
      481 tgattgagtg tgaagcaaaa gggaaccctg cccccagctt ccactggact cgcaacagta
      541 ggttcttcaa catcgccaag gacccccggg tgtcgatgag gaggaggtct ggtaccctgg
      601 tgatcgactt ccgcagtggc gggcggccag aggagtatga gggggaatac cagtgttttg
      661 cccgcaacaa gtttggcacg gccctgtcca ataggatccg cctgcaggtg tccaaatctc
      721 ctctgtggcc caaggaaaac ctagaccctg tcgtcgttca agaaggtgct cccttgacgc
      781 tccagtgcaa ccccccacct ggacttccgt ccccagtcat cttctggatg agcagctcca
      841 tggagcccat cacccaagac aagcgtgtgt cccagggcca taacggagac ctgtacttct
      901 ctaatgtgat gctgcaggac atgcagacgg actacagctg caatgcccgc ttccacttca
      961 cccacaccat ccagcagaag aacccattca acctcaaagt ccttaccacc cgaggagttg
     1021 cagaaagaac acccagcttc atgtatcccc agggcactgc aagcagtcag atggtgctgc
     1081 gtggcatgga cctcctgctg gagtgcatcg cctccggggt cccaacacca gacatcgcat
     1141 ggtacaagaa aggtggggac ctcccgtctg acaaagccaa gttcgagaac tttaacaagg
     1201 ccctgcgtat caccaacgtg tccgaggaag actccgggga gtatttctgc ctggcctcca
     1261 acaagatggg cagcatccgg cacacgatct cggtgagagt gaaggctgct ccctactggc
     1321 tggacgaacc caagaacctt atcctggctc ctggcgagga cgggagactg gtgtgtcgag
     1381 ccaacgggaa ccccaagccc accgtccagt ggatggtgaa tggggaacct ttgcaatcgg
     1441 caccacccaa cccaaaccgt gaggtggccg gggacaccat catcttccgg gacacccaga
     1501 tcagcagcag ggccgtgtac cagtgcaaca cctccaacga gcacggctac ctgctggcca
     1561 acgccttcgt cagcgtgctg gacgtgccgc ctcggatgct gtcaccccgg aaccagctca
     1621 tcagggtgat cctgtacaac cggacgcggc tggactgccc gttctttggg tctcccatcc
     1681 ccacactccg atggtttaag aatgggcaag gaagcaacct ggatggtggc aactaccatg
     1741 tctacgagaa cggcagtctg gaaatcaaga tgatccgcaa agaggaccaa ggcatctaca
     1801 cctgtgttgc caccaacatc ctgggcaaag ctgagaacca ggtccgcctg gaggtcaaag
     1861 accccaccag gatctaccgg atgcctgagg accaggtcgc caaaaggggc accacggtgc
     1921 agctggagtg tcgcgtgaag cacgacccct ccctgaagct cacagtgtac tggctgaagg
     1981 acgacgagcc cctctacgtc gggaacagga tgaagaaaga agaggactcc ctgaccatct
     2041 ttggtgtggc cgagcgggac cagggtagct acacatgcgt tgccagcacc gagctggacc
     2101 aagacctggc caaggcctac ctgaccgtgc taggtaactg ccgctgccca cactggcgct
     2161 gatccccacc ccctatttcc cgaggccaga gaagcggagg acggttccaa gggcagagcc
     2221 tgtgatcagt gagccagcca ggcctggtga tcctcctgcc aggcctggtg atcctcctgc
     2281 cttctggttt aagggttagg aagctgctcc tttccgaaca agctgtgctg gatgccttac
     2341 ctcctgaatg gaaccattaa cttgcccaaa tcctcacctg aagggtgcct gaaggagaga
     2401 gggaaatgga cagggggttc tcattgggat catttttacc aactttacag ctaactctaa
     2461 accactaagt caattaaaac aatccatcct tgaagcaa
//
LOCUS       XM_032652123            9607 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neurofascin (NFASC), transcript variant
            X6, mRNA.
ACCESSION   XM_032652123
VERSION     XM_032652123.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9607
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9607
                     /gene="NFASC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     92% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116763936"
     CDS             170..4180
                     /gene="NFASC"
                     /codon_start=1
                     /product="neurofascin isoform X6"
                     /protein_id="XP_032508014.1"
                     /db_xref="GeneID:116763936"
                     /translation="MARQQPPPWVHTAFLFCLLSLSGAIEIPMDLSQPPTITKQSVKE
                     HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR
                     PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP
                     GLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ
                     QKNPFNLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK
                     KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL
                     DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT
                     QISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFG
                     SPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQV
                     RLEVKDPTRIYRMPEDQVAKRGTTVQLECRVKHDPSLKLTVYWLKDDEPLYVGNRMKK
                     EEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTNRLAALPKGRPDR
                     PRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSA
                     ILQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEI
                     TWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAE
                     NDFGKGPEPDTVIGYSGEDYPRAAPTDVKIRVLNSTAISLQWNRVYSDTVQGQLREYR
                     AYYWRESSLLKNLWVSQKRQQAGFPGDRLRGVVSRLFPYSNYKLEMAVVNGRGDGPRS
                     ETKEFTTPEGVPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVG
                     KQIVENFSPNQTKFTMQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEAAPTAAP
                     PTSPPTTVGVTGTVGSTDATAATTEATTVPTIPTVAPSTVATTTVATTTTTTAAATTM
                     ESPPTTTRTEIQESAPDERSIWNVTVLPNSKWANITWKHNFGPGTDFVVEYIDSNHTK
                     KTVPVKAQAQPIQLTDLYPGMTYTLRVYSRDHEGISSTVITFMTSTAYTNNQADIATQ
                     GWFIGLMCAVALLVLTLLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDE
                     DNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGN
                     ESSEATSPVNAIYSLA"
     misc_feature    272..556
                     /gene="NFASC"
                     /note="Immunoglobulin (Ig)-like domain of human
                     neurofascin (NF); member of the I-set of Ig superfamily
                     (IgSF) domains; Region: IgI_hNeurofascin_like; cd05875"
                     /db_xref="CDD:409459"
     misc_feature    272..286
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409459"
     misc_feature    299..313
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409459"
     misc_feature    326..349
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409459"
     misc_feature    365..382
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409459"
     misc_feature    389..397
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409459"
     misc_feature    416..427
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409459"
     misc_feature    440..454
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409459"
     misc_feature    491..517
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409459"
     misc_feature    524..556
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409459"
     misc_feature    581..853
                     /gene="NFASC"
                     /note="Second immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; member
                     of the I-set of Ig superfamily (IgSF) domains; Region:
                     IgI_2_L1-CAM_like; cd05845"
                     /db_xref="CDD:409432"
     misc_feature    581..592
                     /gene="NFASC"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409432"
     misc_feature    596..610
                     /gene="NFASC"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409432"
     misc_feature    617..643
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409432"
     misc_feature    662..682
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409432"
     misc_feature    689..700
                     /gene="NFASC"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409432"
     misc_feature    716..730
                     /gene="NFASC"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409432"
     misc_feature    734..748
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409432"
     misc_feature    779..805
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409432"
     misc_feature    812..853
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409432"
     misc_feature    905..1153
                     /gene="NFASC"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains; Region:
                     Ig3_L1-CAM_like; cd05731"
                     /db_xref="CDD:409394"
     misc_feature    941..955
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409394"
     misc_feature    980..994
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409394"
     misc_feature    1046..1060
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409394"
     misc_feature    1088..1105
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409394"
     misc_feature    1127..1138
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409394"
     misc_feature    1163..1429
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1211..1225
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1250..1264
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1322..1336
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1364..1381
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1403..1414
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1499..1705
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1532..1546
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1601..1615
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1643..1660
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1682..1693
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1733..1978
                     /gene="NFASC"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1766..1780
                     /gene="NFASC"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1811..1822
                     /gene="NFASC"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1874..1888
                     /gene="NFASC"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1916..1933
                     /gene="NFASC"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1955..1966
                     /gene="NFASC"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    2033..2305
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2033..2035,2231..2233,2276..2278)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    <2225..>2761
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    order(2279..2284,2288..2293)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2633..2932
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2897..2902,2906..2911)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2945..3220
                     /gene="NFASC"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2945..2947,3146..3148,3191..3193)
                     /gene="NFASC"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(3194..3199,3203..3208)
                     /gene="NFASC"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    3497..3715
                     /gene="NFASC"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    3851..4105
                     /gene="NFASC"
                     /note="Bravo-like intracellular region; Region:
                     Bravo_FIGEY; pfam13882"
                     /db_xref="CDD:464016"
ORIGIN      
        1 tttgggacgc tggagtgttc cttcccgctg cagactggaa gggagccccc tctggtgtta
       61 caggaaggag gctgaatgag gcagagacgc tgagctctgt ccgggaggcc cagttacagc
      121 ggctggaggc tgtgggccag ggagcaggga gcgaggccca gtgctcagga tggccaggca
      181 gcagccaccg ccctgggtcc acacagcctt cctcttctgc ctgctcagcc tcagcggggc
      241 catcgagatt cctatggatc tgtcccagcc cccaaccatc accaagcagt cagtgaagga
      301 gcacatcgtg gatccccgtg ataacatctt gattgagtgt gaagcaaaag ggaaccctgc
      361 ccccagcttc cactggactc gcaacagtag gttcttcaac atcgccaagg acccccgggt
      421 gtcgatgagg aggaggtctg gtaccctggt gatcgacttc cgcagtggcg ggcggccaga
      481 ggagtatgag ggggaatacc agtgttttgc ccgcaacaag tttggcacgg ccctgtccaa
      541 taggatccgc ctgcaggtgt ccaaatctcc tctgtggccc aaggaaaacc tagaccctgt
      601 cgtcgttcaa gaaggtgctc ccttgacgct ccagtgcaac cccccacctg gacttccgtc
      661 cccagtcatc ttctggatga gcagctccat ggagcccatc acccaagaca agcgtgtgtc
      721 ccagggccat aacggagacc tgtacttctc taatgtgatg ctgcaggaca tgcagacgga
      781 ctacagctgc aatgcccgct tccacttcac ccacaccatc cagcagaaga acccattcaa
      841 cctcaaagtc cttaccaccc gaggagttgc agaaagaaca cccagcttca tgtatcccca
      901 gggcactgca agcagtcaga tggtgctgcg tggcatggac ctcctgctgg agtgcatcgc
      961 ctccggggtc ccaacaccag acatcgcatg gtacaagaaa ggtggggacc tcccgtctga
     1021 caaagccaag ttcgagaact ttaacaaggc cctgcgtatc accaacgtgt ccgaggaaga
     1081 ctccggggag tatttctgcc tggcctccaa caagatgggc agcatccggc acacgatctc
     1141 ggtgagagtg aaggctgctc cctactggct ggacgaaccc aagaacctta tcctggctcc
     1201 tggcgaggac gggagactgg tgtgtcgagc caacgggaac cccaagccca ccgtccagtg
     1261 gatggtgaat ggggaacctt tgcaatcggc accacccaac ccaaaccgtg aggtggccgg
     1321 ggacaccatc atcttccggg acacccagat cagcagcagg gccgtgtacc agtgcaacac
     1381 ctccaacgag cacggctacc tgctggccaa cgccttcgtc agcgtgctgg acgtgccgcc
     1441 tcggatgctg tcaccccgga accagctcat cagggtgatc ctgtacaacc ggacgcggct
     1501 ggactgcccg ttctttgggt ctcccatccc cacactccga tggtttaaga atgggcaagg
     1561 aagcaacctg gatggtggca actaccatgt ctacgagaac ggcagtctgg aaatcaagat
     1621 gatccgcaaa gaggaccaag gcatctacac ctgtgttgcc accaacatcc tgggcaaagc
     1681 tgagaaccag gtccgcctgg aggtcaaaga ccccaccagg atctaccgga tgcctgagga
     1741 ccaggtcgcc aaaaggggca ccacggtgca gctggagtgt cgcgtgaagc acgacccctc
     1801 cctgaagctc acagtgtact ggctgaagga cgacgagccc ctctacgtcg ggaacaggat
     1861 gaagaaagaa gaggactccc tgaccatctt tggtgtggcc gagcgggacc agggtagcta
     1921 cacatgcgtt gccagcaccg agctggacca agacctggcc aaggcctacc tgaccgtgct
     1981 agctgatcag gccactccaa ctaaccgttt ggctgccctg cccaaaggac ggccagaccg
     2041 accccgggac ctggagctca ccgacctggc cgagaggagc gtgagactga cctggatccc
     2101 gggggacgat aacaacagcc ccatcacaga ctacgttgtc cagtttgaag aggaccagtt
     2161 ccagccaggg gtctggcatg accattccaa gttcccaggc agtgtcaact cagccatcct
     2221 ccagctgtcc ccctatgtca actaccagtt ccgggtcatt gccatcaatg aggtgggcag
     2281 cagccatccc agcctcccgt ccgagcgcta ccgaaccagt ggagcacccc ctgagtccaa
     2341 cccctctgat gtgaagggag aggggaccag aaagaacaac atggagatca cgtggacgcc
     2401 gatgaacgcc acctccgcct ttggccccaa cctgcgctac atcgtcaagt ggcggcggag
     2461 agagacccga gagacctgga acaatgtcac tgtgtggggc tcccgctatg tggtggggca
     2521 gacccctgtc tacgtgccct atgagatccg agtccaggcg gaaaatgact ttgggaaggg
     2581 ccctgaacca gacactgtca tcggttactc cggagaagat tatcccaggg ctgcacccac
     2641 tgatgttaaa atccgagtcc tgaacagcac agccatcagc cttcagtgga accgcgtcta
     2701 ctccgacacg gtccagggcc agctcagaga gtaccgagcc tactactgga gggagagcag
     2761 cttgctgaag aacctgtggg tgtctcagaa gaggcagcaa gccggcttcc ccggcgaccg
     2821 cctccgtggc gtggtgtccc gcctcttccc ctacagtaac tacaagctgg agatggctgt
     2881 ggtcaatggg cgaggcgacg ggcctcgcag tgaaaccaag gagttcacca ccccggaagg
     2941 agtacccagt gcccccaggc gtttccgagt ccggcagccc aacctggaga caatcaacct
     3001 ggaatgggat catccagaac accccaatgg gatcctgatt ggatacactc tcaaatacgt
     3061 ggcctttaat ggaaccaaag taggaaagca gatagtggaa aacttctctc ccaatcagac
     3121 caagttcacg atgcaaagag cagaccccgt gtcgcgctac cgcttttccc tcagtgccag
     3181 gacgcaggtg ggctctgggg aagcagtcac agaggagtca ccagcacccc cgaatgaagc
     3241 tgctccaacc gcagctcctc ccacgtcgcc cccgaccacg gtgggtgtga cgggcacggt
     3301 gggcagtact gatgccactg ctgccaccac cgaagccaca acagtcccca ccatcccaac
     3361 tgtcgcaccc tccaccgtcg ccaccaccac cgtcgccaca actactacaa ccactgccgc
     3421 cgccaccacc atggagagtc ctcccaccac caccaggact gagattcaag aatccgcccc
     3481 cgacgagcga tccatctgga atgtcacagt gctccccaac agtaaatggg ccaacatcac
     3541 ctggaagcac aatttcgggc ccggaactga ctttgtggtt gagtacatcg acagcaacca
     3601 tacgaaaaaa actgtccctg ttaaggccca ggcccagccc atacagctga cagacctcta
     3661 tcccggtatg acatacacgt tgcgagttta ttcccgggac cacgagggca tcagcagtac
     3721 cgtcatcacc tttatgacca gtacagccta caccaacaac caggcggaca tcgccaccca
     3781 gggctggttc attgggctca tgtgtgccgt cgccctcctg gtgctgaccc tgctcatcgt
     3841 ctgtttcatc aagaggagtc gaggcggcaa gtacccagtg cgagaaaaga aggatgttcc
     3901 ccttggccct gaagacccca aagaagagga tggctccttt gattacagtg acgaggacaa
     3961 caagcccttg cagggcagcc agacgtccct ggatggcacc atcaagcagc aggagagtga
     4021 tgacagcctg gtggactatg gcgagggcgg cgagggacag ttcaatgagg acggctcctt
     4081 catcggccag tacacagtca aaaaggacaa ggaagagaca gagggcaacg aaagctcaga
     4141 ggccacatct cctgtcaacg ccatctattc tctggcctaa cagagccccc caggcacagc
     4201 cactaccttg caagtagaag gaggggagag ggggagacga gccactgcag acctaccaca
     4261 aagccgccac caccttcagg gacaagggta caacatggga gtctgccaag ctgtgaggac
     4321 cagtgaccac ccagccaacc gcaagccccc tcccgatgac ccccccgggg tgccaccagt
     4381 gggcgagctg gagccatggc taagctcagc tggagggagc ccaggtccct tgctcagcct
     4441 cacagccacc cccagcctct acccacactg cctgcccttg acctcaacac acacactcac
     4501 cagtttctgt tggttacggt acttaactca ttgtctttat ttttgctttg tgggtcttct
     4561 cctccagacc caacatctcc attttctttt ccttttgaag aaatgtccct ggaaaaaaag
     4621 aaagaatagg tggattctcc cccaggaaac ttcagagata gataggcaaa aaaaggattg
     4681 atccgtaaac gaacacatag aaaagctata gtattcaaac cgcagctggg ccaacgtatt
     4741 tccgaaggat gcctttctcg ccagatgcct cccctggccc ccaacccatc cacctcagcc
     4801 ttgtcagttg ctgagctggg cttggctcct ttctggaaaa tgacagtatt tttggcaggg
     4861 agagggtaag caggcctcct tgccttgctc tggtgcagtt gggaggtggg cttacctctt
     4921 gctcctggct cttaccctgc ccctgcctct ggagtgtctg agacgaaagc tgcaatgact
     4981 gaaggagttt aaggaacagg agcgggaagg acttcagctc cagtgactgt gtacctcaag
     5041 cagaggaaaa ccaggcgtcc gtccctaggg agctttgccc acctctagag agaaggaaag
     5101 ggctaggttt ggacttcctg cctccccatc agtgaaactc aggatgtggg agagaggacc
     5161 acacccactg catccagagt agagggtgcc tcccacctgg tcggggtctg tgctgctgcc
     5221 ctccaggaga tggacccctg cgatgtgaag gctgtgccgg tgtgcttggg ggtggaaagc
     5281 actgctcccc ctttcgtctc tagcagatgg cagctcctgt atgatgttga aactggtgtt
     5341 ttatggcgtg tggatggggc cctgctgccc ccaagactga gccggtgtgt cctttcctta
     5401 gggtatttac ctatcaggag cccctccccg ccccccccaa cagtgctgta aaagcctggc
     5461 ctgggagtgc tcttcatatg ccttatgcag ctctgacctg tccctgcagt tcccaggttt
     5521 ccagcccctc cctgcaagcc ttgaagcctc cagtgacatc agtctcaagg agaatggggc
     5581 ggcctatgca agcatcacag cagaaccaga agcagccagt caaaatgtgt cctgcagccc
     5641 gttgccccag atggagacac tcgcagacct gcagttctct gagacccaag gcactgcctt
     5701 cacgctcccc acctactcca ttttgaaacc aaaggtacct agcctcagag agagaaagag
     5761 agagagatct agagcctaag agtaaccctt cagctgttgc tgcagctaaa gtcggtttca
     5821 ggagggtgaa gctgaccccc agtagtggac cacctgccac agacacagcc tctgattgga
     5881 gcctccagct tcttgccagg cgacctgggc aggagcaagg ctgtgtcctt cagagacatt
     5941 cttaaagcat cgtttgccac atgtttaagc cgcaaaggta ttagcaatgc ctgcatcact
     6001 taataatcag tcagttgaag gtcaagccca taggcacacc tactctgtct gcaggtgaga
     6061 aaatgtagcc cagagctgag ccagttatgt tgtctgaacc cgagcgagta actgtccttt
     6121 ggtccaagcc gtagccaggt gtgctgcctg gaagcctggg gggaagcgct ctcgtgatga
     6181 tgggggacag ggcgaatagt aggggactag ggagccagct caggggtccc ctcccctgcc
     6241 tttcctcctc cacctgcctg gatactgctg ggcattcctg tagcctaggg aatgtcaggg
     6301 aagtgtgcct gtgagctgaa ttaaaggacc ggcctttcca gaaaacactc tggatctgag
     6361 cagagcagtc agcctctcag gccctcattc catattgcac aggacgcact agtaaactca
     6421 ttgcaccgga agtaagctct ttgggcagga tggaccgtaa gatgtcacac ccgtccctct
     6481 gcctcaggaa agtcctccac acaactgatg atgggggaag ggctgacagt cgtggaactg
     6541 agtcttggga cagagtggca ttggttggca ttggttggca ctgagtgctt aagccgccag
     6601 tggctccagg ctcaaaggga agagctttgg agcgggaact tggtcctgaa gactggtcaa
     6661 gacaggggca gtcctgctgc ctgagcctct cttctctgcc ccttgggcca agttgctgaa
     6721 cttgtctgta ttttggtgcc tctgtctccc ctagtcagtc cctcctttga aaacctgtcc
     6781 ccacggaggg gcatgggccc agctaaagga gcggggaggc cagtgtctgg ggagggcacc
     6841 actgcggggc cgggggacag ctgcctctca ccttgcctgg gtcgttgtga atgggaccct
     6901 tctttcctta ccttgctttt ggggagatgg ttgagtttca gctgaaaagt agccacttcc
     6961 ctcgtccgtt gccttcgccc tgaggggtca gaggcatttg gtctaccccc ttcctggcag
     7021 gtcccaaggt ctcagtccca aggtccgaga ggctgctggt gccagtacta atcaccctgc
     7081 aaggggaccg ctgcctgggc ccagacggtg ctttcatggt ttccgtgcat gcagttagcc
     7141 ctggaaaagg ggtgggaaca gacccacaga tacctgtggc ttttccagcc gctggactgc
     7201 ctccctgcac acagccggca gccacaccgg cacactcaca gcagacctag tggcaggcgc
     7261 ctttgcaggg cggcactttc gggggagcaa tccagattac gaccgtgtct tgaagaggat
     7321 gagtccatag ccaggcccgc tggagatgaa acgtgaaggg ctgtgtgggg tgccgtgcac
     7381 aactcagggc aggggaagga ggctgcccat gctgggcccc acttgggcaa ttcttggagg
     7441 caaaaccaag agagacagag tctgatccaa aggagagcga atcttcccca ggaacagcac
     7501 aggcagcagc tttttaaggc tcctggggct cctctttgca gtatcagagc caagtcacag
     7561 agcatcccaa acagcccgtg tgacgagagc cgtggggatt tcacacaccc ttgcctcagt
     7621 ctttgcaagg ctgctccact aacacgctga aaaggcgagg cttcctgggc tctcagctgg
     7681 tggggcgggt gtcaggaatc acttctcagc gggagggcac agagcacact ccctgcccgt
     7741 gatacctcgg tcaccactgc accagcccct gccacacaca cacaagcccg tgttgtaatt
     7801 cgttccaccc agctaggtcc actggaaaga aatcaccctg tggatccgag ttgatcttta
     7861 catggtggct taagagtagc atatagggag atccctgatt aaaacagaaa atcagaggag
     7921 tccaacgaat gaaacaaaga gcttgaaatg tcaggaggac actcagtgcc ccgggcagag
     7981 cccaaatcct gggcagcccc tccttgaaac caggcagggg ccaccccatg ggagttcaag
     8041 ccaaccttgt ggctgtcccc agcctgccca gcccaagcca gggcagtgcc ctttccttcc
     8101 ctcccctact aagaacgggt tctgagaagg aacagaggga aaggaggaca gctgtccagg
     8161 gaagccacca taccccacca cccagtatct caagccacac ccaaaaccag tgcccctcta
     8221 gcagtacatt agtattaaat ggatgttttg taacgataag gatggaagtg aaataggtac
     8281 aaagctgtct agcttaagac aggatcagat ctcagcacgc agaaggatca cagagctgat
     8341 ctgattgaag gtactcatcg taagctaaaa tccagggagg taaagggact tgcccaaggt
     8401 cacacagcta gtaaatcaag gtgaggtagg gcttgagctc aggccttctg actccttgtt
     8461 cagtgttctt tcatctcact gcagctgctg ccttgggagc agtggtgtta cttaagatct
     8521 ggcctgctgg ttcactgtct cccacgtctc tttccacgtc tcccacatcc ccatacacct
     8581 ccacagatga aatcagtgga tttttctgag tcccagctca gccagtctgt gccagcctgt
     8641 ggtgaaccag ccgtgctgtt caggggagac ccaagccagg agaagagagt gacgagctga
     8701 ttggtgtttg ccaccatgaa gcctagagta tcccctaggg tggtgtctct cgcttcgtcg
     8761 taatgcatcg cgcccccagc atactgtgtc cctcggaaga gcgacggcca cagggtgccg
     8821 aggggcagca gggcccatgg aagctccccc cgaccccggg atttgctggg ctggaggtca
     8881 gcacgtgtaa agacttcagt gaagcaataa atacaaaaat ctgggagaag aaatccagaa
     8941 ttttgtgcac ttctctgttt ctttttcaaa aaggatgcag atcaggtgac cctgccctgc
     9001 tctcctttct gattcccaaa ttcgacgtcc tcggtcagtg ttgtccctct gcccagctcc
     9061 cagctctttg ccaacctcac atcctcctgc actgagcatc agttgtctgt ggcgtggcca
     9121 ccttctgtcc cggtcccacc ctcacccatg ctgggccctg gaggacctct tgcccttcac
     9181 ctcccttcaa cacacacatt ttccggtttg ttcctttcag tggggaaatc ttttccgaat
     9241 gtctccatcc cttcccacct acccacacac ccacaaattg gtctgatctt ttcttccatt
     9301 ggttaaatat ttaactcacc atggcacacc tcgttttaac ccctctcaca tcgtgttctt
     9361 tcctttttgc gagttgtttt gcattaacca acgttgtcag tgacagatgc atatctgagg
     9421 gtgtcacgct cgaccttcag cagggaaggc ttctgggtcg tgaggaccat ctaatatgtg
     9481 gacttataaa cgactgcatg agcaatgaaa aggccaaatt attcagaatt ttttttgaat
     9541 cactgtaaaa aaaaaaaact gatttctttt gtatagagaa cactaaacgt ataataaaag
     9601 ttgttca
//
LOCUS       XM_032652137            1682 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uridine-cytidine kinase 2 (UCK2),
            transcript variant X1, mRNA.
ACCESSION   XM_032652137
VERSION     XM_032652137.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1682
                     /gene="UCK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763949"
     CDS             251..1036
                     /gene="UCK2"
                     /codon_start=1
                     /product="uridine-cytidine kinase 2 isoform X1"
                     /protein_id="XP_032508028.1"
                     /db_xref="GeneID:116763949"
                     /translation="MAGDSEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLL
                     GQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELIFKTLKEIT
                     EGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDAD
                     TRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAI
                     NLIVQHIQDILNGGLSKRQTNGYLNGYTPSRKRQASESSSRPH"
     misc_feature    314..934
                     /gene="UCK2"
                     /note="Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
                     also known as uridine kinase or uridine-cytidine kinase
                     (UCK), catalyzes the reversible phosphoryl transfer from
                     ATP to uridine or cytidine to yield UMP or CMP. In the
                     primidine nucleotide-salvage pathway; Region: UMPK;
                     cd02023"
                     /db_xref="CDD:238981"
     misc_feature    order(350..352,743..745,887..889)
                     /gene="UCK2"
                     /note="ATP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238981"
     misc_feature    order(434..436,506..508,746..748)
                     /gene="UCK2"
                     /note="Sugar specificity [active]"
                     /db_xref="CDD:238981"
     misc_feature    order(443..445,497..499,584..586,590..592,599..601,
                     770..772)
                     /gene="UCK2"
                     /note="Pyrimidine base specificity [active]"
                     /db_xref="CDD:238981"
ORIGIN      
        1 tggagcagca gcatcacgct gacctctgcc tgggatgtaa accggagcgg ccgcagcggg
       61 cagaggaagg ctctcggatc cttcgggaaa gccagctcca gcaccgggat ccgagcagtg
      121 cgcagggagc cgcgtcagcc tcgacctggg cagcgcccag cggaggctgc gggaaagcgg
      181 agggagcccg gcgcgggcgg ggagcgtgcg tccgttcgca caggcagtgg gaggaggggc
      241 ggcgcgagcc atggctgggg acagcgagca gaccctgcag aaccaccagc agcccaacgg
      301 cggcgagccc ttcctgatcg gcgttagcgg gggcacggcc agcggcaagt cttccgtttg
      361 tgctaagatt gttcagctcc tgggacagaa tgaggtggat tatcgccaga agcaggtggt
      421 catcctgagc caggatagct tctaccgtgt cctcacttca gagcagaagg ccaaagcctt
      481 gaagggccag ttcaattttg atcacccgga tgcctttgac aatgaactca tcttcaagac
      541 actcaaagaa atcaccgaag ggaaaacagt ccagattcct gtgtatgact ttgtctccca
      601 ttcccggaag gaggagacgg ttactgtcta ccctgcagac gtggtgctct tcgaagggat
      661 cctggccttc tactcccagg aagtgcgaga cctgttccag atgaagcttt tcgtggacac
      721 agatgcggac acccggctct cccgcagagt attaagggac atcagcgaaa gagggaggga
      781 ccttgagcag attttatctc agtacattac attcgtcaag cctgcctttg aggaattctg
      841 cttgccaaca aagaaatatg ctgatgtgat cattcctaga ggtgcagata atctagtggc
      901 catcaacctc atcgtgcagc acatccagga catcctgaac ggagggctct ccaaacggca
      961 gaccaacggc tatctcaatg gctatacccc ttcacgcaag aggcaggcct cggagtccag
     1021 cagccggccg cactgacccc cgtctcctca gaccctggcc ccgatctcca agggacagga
     1081 ggagggggca ggaggcactg tgcatctata catatggttt cctatgacat tgctgtattt
     1141 aagaaaacac catggagatg aaatgccttt tttttttttt ttttttttgg tacttcggag
     1201 cagcgaaatg aaacagaact tgaccctgag cttaaatgac aaactgtgcc aactactact
     1261 ggtgatgcct aattatgact tcaacgtgta accagttata aatacataca tatatatata
     1321 tatagaaaag gatctatttt tgtgtaaatg tacaaatact gtacagctgt ttgccgtaag
     1381 tattctgcag gagggcctgt acttgagtgt gttttggggg ctggagctgg agtttcacca
     1441 aagggaagtt gcctggtggg ttccaggtgg ggcaggctca ggcatctggg agggaggctc
     1501 acggctcgcg gctctcagtg tctgtgggtc tcgttggaag tggagattgg aacttttgat
     1561 cgcttcccct gccagatgcc accttcttgg tgctggagct ttaggataat gttaatgaga
     1621 gatcctcttt tctttttctt tttctttttt tttttttttt tttttttgag ttgaaattag
     1681 ac
//
LOCUS       XM_032652145            1458 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uridine-cytidine kinase 2 (UCK2),
            transcript variant X2, mRNA.
ACCESSION   XM_032652145
VERSION     XM_032652145.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1458
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1458
                     /gene="UCK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763949"
     CDS             42..812
                     /gene="UCK2"
                     /codon_start=1
                     /product="uridine-cytidine kinase 2 isoform X2"
                     /protein_id="XP_032508036.1"
                     /db_xref="GeneID:116763949"
                     /translation="MGGRGLGPSEVPGVLRPPITGLARSPAASSVCAKIVQLLGQNEV
                     DYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELIFKTLKEITEGKTV
                     QIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSR
                     RVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQ
                     HIQDILNGGLSKRQTNGYLNGYTPSRKRQASESSSRPH"
     misc_feature    126..710
                     /gene="UCK2"
                     /note="Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
                     also known as uridine kinase or uridine-cytidine kinase
                     (UCK), catalyzes the reversible phosphoryl transfer from
                     ATP to uridine or cytidine to yield UMP or CMP. In the
                     primidine nucleotide-salvage pathway; Region: UMPK;
                     cd02023"
                     /db_xref="CDD:238981"
     misc_feature    order(126..128,519..521,663..665)
                     /gene="UCK2"
                     /note="ATP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238981"
     misc_feature    order(210..212,282..284,522..524)
                     /gene="UCK2"
                     /note="Sugar specificity [active]"
                     /db_xref="CDD:238981"
     misc_feature    order(219..221,273..275,360..362,366..368,375..377,
                     546..548)
                     /gene="UCK2"
                     /note="Pyrimidine base specificity [active]"
                     /db_xref="CDD:238981"
ORIGIN      
        1 cagagtcttc cccgcgcaga ctccgggcgc cgcggcagtg gatgggcggc cggggactcg
       61 ggccatctga ggttccaggg gtactccggc caccgatcac agggctggca cgctccccgg
      121 cggcgtcttc cgtttgtgct aagattgttc agctcctggg acagaatgag gtggattatc
      181 gccagaagca ggtggtcatc ctgagccagg atagcttcta ccgtgtcctc acttcagagc
      241 agaaggccaa agccttgaag ggccagttca attttgatca cccggatgcc tttgacaatg
      301 aactcatctt caagacactc aaagaaatca ccgaagggaa aacagtccag attcctgtgt
      361 atgactttgt ctcccattcc cggaaggagg agacggttac tgtctaccct gcagacgtgg
      421 tgctcttcga agggatcctg gccttctact cccaggaagt gcgagacctg ttccagatga
      481 agcttttcgt ggacacagat gcggacaccc ggctctcccg cagagtatta agggacatca
      541 gcgaaagagg gagggacctt gagcagattt tatctcagta cattacattc gtcaagcctg
      601 cctttgagga attctgcttg ccaacaaaga aatatgctga tgtgatcatt cctagaggtg
      661 cagataatct agtggccatc aacctcatcg tgcagcacat ccaggacatc ctgaacggag
      721 ggctctccaa acggcagacc aacggctatc tcaatggcta taccccttca cgcaagaggc
      781 aggcctcgga gtccagcagc cggccgcact gacccccgtc tcctcagacc ctggccccga
      841 tctccaaggg acaggaggag ggggcaggag gcactgtgca tctatacata tggtttccta
      901 tgacattgct gtatttaaga aaacaccatg gagatgaaat gccttttttt tttttttttt
      961 ttttggtact tcggagcagc gaaatgaaac agaacttgac cctgagctta aatgacaaac
     1021 tgtgccaact actactggtg atgcctaatt atgacttcaa cgtgtaacca gttataaata
     1081 catacatata tatatatata gaaaaggatc tatttttgtg taaatgtaca aatactgtac
     1141 agctgtttgc cgtaagtatt ctgcaggagg gcctgtactt gagtgtgttt tgggggctgg
     1201 agctggagtt tcaccaaagg gaagttgcct ggtgggttcc aggtggggca ggctcaggca
     1261 tctgggaggg aggctcacgg ctcgcggctc tcagtgtctg tgggtctcgt tggaagtgga
     1321 gattggaact tttgatcgct tcccctgcca gatgccacct tcttggtgct ggagctttag
     1381 gataatgtta atgagagatc ctcttttctt tttctttttc tttttttttt tttttttttt
     1441 tttgagttga aattagac
//
LOCUS       XM_032652159            6678 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ecotropic viral integration site 5
            (EVI5), transcript variant X1, mRNA.
ACCESSION   XM_032652159
VERSION     XM_032652159.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6678
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6678
                     /gene="EVI5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763954"
     CDS             405..2882
                     /gene="EVI5"
                     /codon_start=1
                     /product="ecotropic viral integration site 5 protein
                     homolog isoform X1"
                     /protein_id="XP_032508050.1"
                     /db_xref="GeneID:116763954"
                     /translation="MASQVASPSASLHTTSSSTTLSTPALSPSSPSQLSPDDLELLAK
                     LEEQNRLLETDSKSLRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWE
                     DVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQYSELLKMTSPCEKLIRR
                     DIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEE
                     AFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYA
                     SSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQH
                     FQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTEN
                     RLLKQHIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELANIKQQSDEASAKLEQ
                     AENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIE
                     KRNNSFPDENNIARLQEELIAVKLREAEAITGLKELRQQVKDLEEHWQRHLARTTGRW
                     KDPPKKNAVNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEV
                     INLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELQQ
                     HIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHELRCLKGQRGFSGQPPFDG
                     IHIVSHLIGDDESFHSSDEEFIGNSLQESGIGFPLRRKSGLMSLDPTVADGSESEAED
                     SALKTRESSEVVQKERPLRSESYSTTV"
     misc_feature    750..1376
                     /gene="EVI5"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; Region: TBC; smart00164"
                     /db_xref="CDD:214540"
     misc_feature    <1488..>2468
                     /gene="EVI5"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 ttaagcgcta gggcggcccg gtctctttaa ggccctgccg cgcctgcgcc ttgagccttc
       61 ctgacgcggc cgggccggac ccgggaggag ccggcggcga gcacagtagg ggttgggtgg
      121 tagttgaaac cgcggcggcg cggggggagt gggttagcgt ctgaggcggc cccgagttcc
      181 tgagtgagcg cggcgctcaa gtgggggcgc gaacggcggc cggcggagcc gggagagagg
      241 ccgaggcgct gagacgcggc ggcgcggctg ccggctggat gggaagttaa tgtttacggc
      301 ggagtccacc cagcgtttcc aaggtggcga cagacaaggt tgcagaaaag ttgagttcta
      361 ctctctcatg ggtgaagaac acagtgtcac atacagtcag tcagatggcc agtcaggtgg
      421 caagtccatc tgcttcatta cacactacat cctcatctac cacactgtca acgccagccc
      481 tttcaccatc ttccccgtca cagttgagtc cagacgactt agaactcctg gctaaactgg
      541 aggaacaaaa tagattgtta gaaacagata gtaaatcttt aagatctgta aatggatcaa
      601 gaagaaacag tggctcctcc cttgtatcaa gttcatcagc ctccagcaac ctcagtcacc
      661 ttgaagaaga ctcttggatt ctttggggaa gaattgtgaa tgaatgggaa gatgtgcgca
      721 aaaagaagga aaagcaagtt aaggaacttg ttcgtaaagg gataccccat cattttagag
      781 caatagtttg gcaacttttg tgcagtgcac aaagtatgcc aattaaggat cagtattcag
      841 aactcctgaa aatgacctca ccttgtgaaa aattgatccg aagggacatt gctagaactt
      901 atcctgaaca caattttttt aaggaaaaag atagtcttgg acaggaggtt ttgtttaatg
      961 taatgaaggc ctattcttta gtggatcgtg aggttggtta ctgtcaagga agtgctttta
     1021 tagttggatt gttgcttatg cagatgccag aagaagaagc tttctgtgta tttgttaaat
     1081 taatgcaaga ttatagactt cgtgaacttt ttaaaccaag tatggcagaa ttaggccttt
     1141 gtatgtacca gtttgaatgc atgatacagg agcatcttcc agagctcttt gtgcattttc
     1201 agtctcagag ttttcatacc tcaatgtatg catcatcttg gtttctgact atcttcctta
     1261 cgacttttcc actaccaatt gctacaagga tatttgatat ctttatgtct gagggtttag
     1321 aaatagtgtt tcgggtagga ttagcgcttc ttcaaatgaa tcaggcagaa ctgatgcaac
     1381 tcgacatgga agggatgtta cagcactttc agaaggtcat tccacatcag tttgatggtg
     1441 gtccagacaa attaatccag gcagcttacc aagtcaagta taactcaaaa aaaatgaaaa
     1501 agcttgaaaa ggaatatact acaataaaaa ctaaagaaat ggaagaacaa gttgaaatta
     1561 aaaggttacg cacagaaaac agactattaa aacagcacat tgaaacatta gaaaaagaaa
     1621 gtgcttcctt ggcagataga ttgatacagg gacaagtgac aagagcccag gaggctgagg
     1681 aaaactacct cataaaacgg gagttggcca acatcaaaca gcagagtgat gaggccagtg
     1741 ctaaactgga gcaagctgaa aataccatca ggaagctcca gcaccaacag caatggcata
     1801 aatgcagttc caactacaat gaagattttg tgctacagct agagaaggaa ttggtccaag
     1861 cccgactgag tgaagctgag tctcagtgtg cactaaagga aatgcaggat aaagttctgg
     1921 atatagaaaa gagaaacaac tcgtttcctg atgagaataa cattgcaagg cttcaggagg
     1981 aactcattgc tgtgaaactg agagaggcag aagctattac gggtttaaaa gaacttagac
     2041 aacaagtcaa agatttagag gaacactggc agcgccactt agctcgtact actgggagat
     2101 ggaaagaccc acctaagaaa aatgctgtga atgagttaca agatgaactg atgaccattc
     2161 gacttagaga agctgaaaca caggcagaaa taagagaaat aaaacaaagg atgatggaaa
     2221 tggaaacaca gaaccagatc aatagtaatc atcttcgaag agcagaacaa gaggtgatca
     2281 atctacagga gaaggtgcag tatctttctg cacagaacaa agggctactt acccaattaa
     2341 gtgaagcaaa gcgcaaacaa gcagagattg aatgcaagaa caaggaagaa gtgatggctg
     2401 tgagactccg ggaagcagat agcatagctg ctgtggctga actacagcag cacattgctg
     2461 agcttgaaat ccagaaagaa gaaggaaagc ttcaagggca gcttaacaag tctgattcta
     2521 accagtacat tagggaactg aaagatcaga tagcagagct gaatcatgag ctcaggtgcc
     2581 taaaaggcca gaggggcttc tccggccaac ccccttttga tggaatccac atcgtcagcc
     2641 atttaatagg agatgatgaa tcattccatt cctctgatga agagttcata ggtaattcct
     2701 tacaggaaag tggcattggt tttcctttgc gcagaaaatc tggcctgatg tctttggacc
     2761 ctactgtggc agatggtagt gaaagcgaag cagaagacag tgcgctgaag accagagaga
     2821 gcagtgaagt ggttcaaaag gagcggcccc tgagaagcga gtcgtactca accactgtct
     2881 gaccatcact gtgacctaga ctgtggattt ttttaaggga tcagttatca tgactaaggg
     2941 tttttggaac acatctgttt catatgtata tatatataaa tatatatatt ttacaatctt
     3001 aactgccttt ttatctttgc caaatcttca ccactgactt accattgcta taaagtagag
     3061 tggaatatgg ttaatgggaa aaataaggtt ctagcagtat tactaaatat taatgtttct
     3121 tgtttagaaa atgcaattat atctatatgt gggaaccatt ttgaagttca gaactgtgga
     3181 aaattgaatt ttcttcagac aaaactgttc ttgtgcaata ttttatgctc agtgaacaaa
     3241 ttgtatattt atgtttatca gtttgttttc agggtggctg tctacacaca tttgaccaag
     3301 actgatttac atctgattta tcttggtttt tttgtgtttg gggaattttt tttttcaact
     3361 aaaattattg ctttattaat gggtcattga aaattcccaa acgcaaagcc tttttttcac
     3421 ataattttat aaacacaaat taatggttat ctgtcttgag aattctaaat tttgttttaa
     3481 tttcagattt ttatgtgcac ctgatgcttc tgtatgttgc ctaccagtca gagtagtaag
     3541 ttaactacaa atatagtggg tttttgtaca tatttataaa tctgcaccat gcaacattga
     3601 acattttatg tggagaatgt atctgttgca agatgactgc cttcagcatt ataaaaggac
     3661 ctctgtaaaa ggttaaaaga aaattgaaaa taaaaccaaa cactaatatt ttaatagctt
     3721 tagaattttg cttagcatgc aacactagca gattcataac tgatgcttgt tcaaagacac
     3781 tattgatgaa atcttttact tcatatgtat gtaactaata aatttttcat gattagagag
     3841 gtaatagcac acattactta gtgctaatat tctacttaat ataatttaat caatggactg
     3901 aggtccacaa tacacagcaa ttgtatctgc aaataatcta tgaacattat cttcagattc
     3961 tctagttact aatctataga taaagcaagc cataagaatc ctttcctacc aattctttat
     4021 tatctagact ttttttccct agaaaactga atgcctctca ttgataaatt agaggaaaca
     4081 cccaaactac acctgtacta tggaaagact acaaaaatgt gttgactgga tgctttctac
     4141 tctcattttc aacagcagcc tacggaaaaa aaaaaataac cttcaagaat aagaggaagg
     4201 tagaattcaa taaatatgga ggtacagttt tgcacgatat gttgcatgca gagaaaaaaa
     4261 aaattacatg acacaatgga acagaagaga caaaaatagt tttctgtcta aaccaaggag
     4321 ttaaggctta tggtgcattg tagaccagag tttcccagca aaccctttat agccgttttg
     4381 cttgagaaac aagattgaaa acatgcctat tgtctccata gctccaggct aaattctagt
     4441 ggttaagtaa tttacctgtg gtcacaagtt agtaagtgat cagagccaag attttaatcc
     4501 aaattgctct gacaccaaag catttgaaaa ggctcagcta atgaatttct caattccctg
     4561 cttttctgac agttaatgtg atttaaataa gtttgattta aattgtttcc tgaatatatt
     4621 atatagatat gtatctatat gtatagatat gcaagtatca acactcataa gctttacgca
     4681 gctcatgaac atagatacta ctcctagaat tgtctgactg gtgcctttga gattctctct
     4741 tggggttcat tgctatcagt ctagaggctg ttgatgccca agtgaaatga ggtgattcat
     4801 ggccacatga ttgctttgac cccccacatc aagaaatccg aatgatccag cccatgagcc
     4861 agttccagcc aacatcctgt tttcacgtga cccacaagct aagaatgatt tttacctttt
     4921 taaagagttg aggaaaaaat caaaataata atattttgtg tcacatgaaa atcatgacat
     4981 tcaaatttca gtgtctaagt tttattggcg catacccatg cttattcact tgcattttgt
     5041 ctgtggctgc ttttgtgcca cagtagcaaa gttgagtagc ttaaaatatc tattatctgt
     5101 ccctttagag aaagtttgca gaccttaatt tagatactct aaaatgtagg tttacctctt
     5161 cagtttgtct caagtagaag actgaaccat ttgcttttgc tgttgagcta atggtttgga
     5221 aacctaaaat ttcctggtgg atcctgtact tataactatt caacatggag agtgtgccag
     5281 ctattttaga ttacaaagtc ttcgaagcca tagacaaatt tggaagggta tctgtgcctt
     5341 tggaaatgga gaaagaaagg aaagaatacc agaatcctag cactgttctt gaaagcatgc
     5401 atcattgatt gacctttagg tttatgcttt atgcttcact gagtcagtgt tataatttga
     5461 ctttaaaagt aagaacatct ttctagaacc atgtttcaat tctaaacttt gaaagatatt
     5521 cttaaagaat ttcctaagta ctgtttctgg ttaggaatga gttgttaaaa gaatcatggt
     5581 aagtaaacct tactctgttg agactcttgt aatttggata atgaaaaact agaaacgaca
     5641 atcttctcat tcaagatctt tgattcaaat actccttaga agggtttaaa atcttcctgg
     5701 cctctaggat gtaataggat aacttactcc cttgggatag ttactctctg gtgtcattgc
     5761 catcctgggt tgaaatgctg agagaggcta caggtcacct gaataaaatg gaaattgcgt
     5821 tgaggtgatg aaacagaggc cttaaagatc aagaaaatat ttcaacagcc ttttaaaaaa
     5881 ttagtggtaa attttttctt cctggaaaaa taagtcaaag atgtaacttt acacaatttc
     5941 tacccttttt attgatcaat attaagcatt caatgtttga tgactaattg agacatcaag
     6001 tcctaactaa ctggttggct atttggggaa ggaaaaaaca actttttctt agctctggaa
     6061 tgtaatgcag cttgttactc tccagatagt gcctttgatt gaaaacaagg tctagacctt
     6121 ttaaagtatt ttatttctga catcataaga aatgatttgg ttcctcgttc ttctttatct
     6181 ttacatagtg cactataatt ttcagattta aagtaaaatg agtgtatgaa tcgtgtgtta
     6241 gtaaagccct tttatgacca gcttgatttt tgtgtaagta ccaagtgtca acagctaaca
     6301 tttcatgaaa tcagtgattt actttgtgaa aacaatgagc tttagcctga aaattattgc
     6361 tgctctgtcg ttaatgaaac agtaagtttt taaaattaat tttaatttaa ttcattctac
     6421 tgagattaaa ttttctgatt aaaaatggag tgaatgctat ttataatcca actttttaca
     6481 tcaatccatt gatctaccta ccccttcttt tcactccaaa gagaggatag aataatacat
     6541 tagatatact atagagatgc aaaattataa tgtatttcat tttactgttg gaatttctta
     6601 ttgtaacatt gtatgataac ctgaaatgtt tacttgtgcc tttgctttaa acaattaaag
     6661 ttttccattt tataagaa
//
LOCUS       XM_032652169            6531 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ecotropic viral integration site 5
            (EVI5), transcript variant X2, mRNA.
ACCESSION   XM_032652169
VERSION     XM_032652169.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6531
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6531
                     /gene="EVI5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 4
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763954"
     CDS             405..2735
                     /gene="EVI5"
                     /codon_start=1
                     /product="ecotropic viral integration site 5 protein
                     homolog isoform X2"
                     /protein_id="XP_032508060.1"
                     /db_xref="GeneID:116763954"
                     /translation="MASQVASPSASLHTTSSSTTLSTPALSPSSPSQLSPDDLELLAK
                     LEEQNRLLETDSKSLRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWE
                     DVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQYSELLKMTSPCEKLIRR
                     DIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEE
                     AFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYA
                     SSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQH
                     FQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTEN
                     RLLKQHIETLEKESASLADRLIQHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKE
                     MQDKVLDIEKRNNSFPDENNIARLQEELIAVKLREAEAITGLKELRQQVKDLEEHWQR
                     HLARTTGRWKDPPKKNAVNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSN
                     HLRRAEQEVINLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADS
                     IAAVAELQQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHELRCLKGQRG
                     FSGQPPFDGIHIVSHLIGDDESFHSSDEEFIGNSLQESGIGFPLRRKSGLMSLDPTVA
                     DGSESEAEDSALKTRESSEVVQKERPLRSESYSTTV"
     misc_feature    750..1376
                     /gene="EVI5"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; Region: TBC; smart00164"
                     /db_xref="CDD:214540"
     misc_feature    <1479..2414
                     /gene="EVI5"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 ttaagcgcta gggcggcccg gtctctttaa ggccctgccg cgcctgcgcc ttgagccttc
       61 ctgacgcggc cgggccggac ccgggaggag ccggcggcga gcacagtagg ggttgggtgg
      121 tagttgaaac cgcggcggcg cggggggagt gggttagcgt ctgaggcggc cccgagttcc
      181 tgagtgagcg cggcgctcaa gtgggggcgc gaacggcggc cggcggagcc gggagagagg
      241 ccgaggcgct gagacgcggc ggcgcggctg ccggctggat gggaagttaa tgtttacggc
      301 ggagtccacc cagcgtttcc aaggtggcga cagacaaggt tgcagaaaag ttgagttcta
      361 ctctctcatg ggtgaagaac acagtgtcac atacagtcag tcagatggcc agtcaggtgg
      421 caagtccatc tgcttcatta cacactacat cctcatctac cacactgtca acgccagccc
      481 tttcaccatc ttccccgtca cagttgagtc cagacgactt agaactcctg gctaaactgg
      541 aggaacaaaa tagattgtta gaaacagata gtaaatcttt aagatctgta aatggatcaa
      601 gaagaaacag tggctcctcc cttgtatcaa gttcatcagc ctccagcaac ctcagtcacc
      661 ttgaagaaga ctcttggatt ctttggggaa gaattgtgaa tgaatgggaa gatgtgcgca
      721 aaaagaagga aaagcaagtt aaggaacttg ttcgtaaagg gataccccat cattttagag
      781 caatagtttg gcaacttttg tgcagtgcac aaagtatgcc aattaaggat cagtattcag
      841 aactcctgaa aatgacctca ccttgtgaaa aattgatccg aagggacatt gctagaactt
      901 atcctgaaca caattttttt aaggaaaaag atagtcttgg acaggaggtt ttgtttaatg
      961 taatgaaggc ctattcttta gtggatcgtg aggttggtta ctgtcaagga agtgctttta
     1021 tagttggatt gttgcttatg cagatgccag aagaagaagc tttctgtgta tttgttaaat
     1081 taatgcaaga ttatagactt cgtgaacttt ttaaaccaag tatggcagaa ttaggccttt
     1141 gtatgtacca gtttgaatgc atgatacagg agcatcttcc agagctcttt gtgcattttc
     1201 agtctcagag ttttcatacc tcaatgtatg catcatcttg gtttctgact atcttcctta
     1261 cgacttttcc actaccaatt gctacaagga tatttgatat ctttatgtct gagggtttag
     1321 aaatagtgtt tcgggtagga ttagcgcttc ttcaaatgaa tcaggcagaa ctgatgcaac
     1381 tcgacatgga agggatgtta cagcactttc agaaggtcat tccacatcag tttgatggtg
     1441 gtccagacaa attaatccag gcagcttacc aagtcaagta taactcaaaa aaaatgaaaa
     1501 agcttgaaaa ggaatatact acaataaaaa ctaaagaaat ggaagaacaa gttgaaatta
     1561 aaaggttacg cacagaaaac agactattaa aacagcacat tgaaacatta gaaaaagaaa
     1621 gtgcttcctt ggcagataga ttgatacagc ataaatgcag ttccaactac aatgaagatt
     1681 ttgtgctaca gctagagaag gaattggtcc aagcccgact gagtgaagct gagtctcagt
     1741 gtgcactaaa ggaaatgcag gataaagttc tggatataga aaagagaaac aactcgtttc
     1801 ctgatgagaa taacattgca aggcttcagg aggaactcat tgctgtgaaa ctgagagagg
     1861 cagaagctat tacgggttta aaagaactta gacaacaagt caaagattta gaggaacact
     1921 ggcagcgcca cttagctcgt actactggga gatggaaaga cccacctaag aaaaatgctg
     1981 tgaatgagtt acaagatgaa ctgatgacca ttcgacttag agaagctgaa acacaggcag
     2041 aaataagaga aataaaacaa aggatgatgg aaatggaaac acagaaccag atcaatagta
     2101 atcatcttcg aagagcagaa caagaggtga tcaatctaca ggagaaggtg cagtatcttt
     2161 ctgcacagaa caaagggcta cttacccaat taagtgaagc aaagcgcaaa caagcagaga
     2221 ttgaatgcaa gaacaaggaa gaagtgatgg ctgtgagact ccgggaagca gatagcatag
     2281 ctgctgtggc tgaactacag cagcacattg ctgagcttga aatccagaaa gaagaaggaa
     2341 agcttcaagg gcagcttaac aagtctgatt ctaaccagta cattagggaa ctgaaagatc
     2401 agatagcaga gctgaatcat gagctcaggt gcctaaaagg ccagaggggc ttctccggcc
     2461 aacccccttt tgatggaatc cacatcgtca gccatttaat aggagatgat gaatcattcc
     2521 attcctctga tgaagagttc ataggtaatt ccttacagga aagtggcatt ggttttcctt
     2581 tgcgcagaaa atctggcctg atgtctttgg accctactgt ggcagatggt agtgaaagcg
     2641 aagcagaaga cagtgcgctg aagaccagag agagcagtga agtggttcaa aaggagcggc
     2701 ccctgagaag cgagtcgtac tcaaccactg tctgaccatc actgtgacct agactgtgga
     2761 tttttttaag ggatcagtta tcatgactaa gggtttttgg aacacatctg tttcatatgt
     2821 atatatatat aaatatatat attttacaat cttaactgcc tttttatctt tgccaaatct
     2881 tcaccactga cttaccattg ctataaagta gagtggaata tggttaatgg gaaaaataag
     2941 gttctagcag tattactaaa tattaatgtt tcttgtttag aaaatgcaat tatatctata
     3001 tgtgggaacc attttgaagt tcagaactgt ggaaaattga attttcttca gacaaaactg
     3061 ttcttgtgca atattttatg ctcagtgaac aaattgtata tttatgttta tcagtttgtt
     3121 ttcagggtgg ctgtctacac acatttgacc aagactgatt tacatctgat ttatcttggt
     3181 ttttttgtgt ttggggaatt ttttttttca actaaaatta ttgctttatt aatgggtcat
     3241 tgaaaattcc caaacgcaaa gccttttttt cacataattt tataaacaca aattaatggt
     3301 tatctgtctt gagaattcta aattttgttt taatttcaga tttttatgtg cacctgatgc
     3361 ttctgtatgt tgcctaccag tcagagtagt aagttaacta caaatatagt gggtttttgt
     3421 acatatttat aaatctgcac catgcaacat tgaacatttt atgtggagaa tgtatctgtt
     3481 gcaagatgac tgccttcagc attataaaag gacctctgta aaaggttaaa agaaaattga
     3541 aaataaaacc aaacactaat attttaatag ctttagaatt ttgcttagca tgcaacacta
     3601 gcagattcat aactgatgct tgttcaaaga cactattgat gaaatctttt acttcatatg
     3661 tatgtaacta ataaattttt catgattaga gaggtaatag cacacattac ttagtgctaa
     3721 tattctactt aatataattt aatcaatgga ctgaggtcca caatacacag caattgtatc
     3781 tgcaaataat ctatgaacat tatcttcaga ttctctagtt actaatctat agataaagca
     3841 agccataaga atcctttcct accaattctt tattatctag actttttttc cctagaaaac
     3901 tgaatgcctc tcattgataa attagaggaa acacccaaac tacacctgta ctatggaaag
     3961 actacaaaaa tgtgttgact ggatgctttc tactctcatt ttcaacagca gcctacggaa
     4021 aaaaaaaaat aaccttcaag aataagagga aggtagaatt caataaatat ggaggtacag
     4081 ttttgcacga tatgttgcat gcagagaaaa aaaaaattac atgacacaat ggaacagaag
     4141 agacaaaaat agttttctgt ctaaaccaag gagttaaggc ttatggtgca ttgtagacca
     4201 gagtttccca gcaaaccctt tatagccgtt ttgcttgaga aacaagattg aaaacatgcc
     4261 tattgtctcc atagctccag gctaaattct agtggttaag taatttacct gtggtcacaa
     4321 gttagtaagt gatcagagcc aagattttaa tccaaattgc tctgacacca aagcatttga
     4381 aaaggctcag ctaatgaatt tctcaattcc ctgcttttct gacagttaat gtgatttaaa
     4441 taagtttgat ttaaattgtt tcctgaatat attatataga tatgtatcta tatgtataga
     4501 tatgcaagta tcaacactca taagctttac gcagctcatg aacatagata ctactcctag
     4561 aattgtctga ctggtgcctt tgagattctc tcttggggtt cattgctatc agtctagagg
     4621 ctgttgatgc ccaagtgaaa tgaggtgatt catggccaca tgattgcttt gaccccccac
     4681 atcaagaaat ccgaatgatc cagcccatga gccagttcca gccaacatcc tgttttcacg
     4741 tgacccacaa gctaagaatg atttttacct ttttaaagag ttgaggaaaa aatcaaaata
     4801 ataatatttt gtgtcacatg aaaatcatga cattcaaatt tcagtgtcta agttttattg
     4861 gcgcataccc atgcttattc acttgcattt tgtctgtggc tgcttttgtg ccacagtagc
     4921 aaagttgagt agcttaaaat atctattatc tgtcccttta gagaaagttt gcagacctta
     4981 atttagatac tctaaaatgt aggtttacct cttcagtttg tctcaagtag aagactgaac
     5041 catttgcttt tgctgttgag ctaatggttt ggaaacctaa aatttcctgg tggatcctgt
     5101 acttataact attcaacatg gagagtgtgc cagctatttt agattacaaa gtcttcgaag
     5161 ccatagacaa atttggaagg gtatctgtgc ctttggaaat ggagaaagaa aggaaagaat
     5221 accagaatcc tagcactgtt cttgaaagca tgcatcattg attgaccttt aggtttatgc
     5281 tttatgcttc actgagtcag tgttataatt tgactttaaa agtaagaaca tctttctaga
     5341 accatgtttc aattctaaac tttgaaagat attcttaaag aatttcctaa gtactgtttc
     5401 tggttaggaa tgagttgtta aaagaatcat ggtaagtaaa ccttactctg ttgagactct
     5461 tgtaatttgg ataatgaaaa actagaaacg acaatcttct cattcaagat ctttgattca
     5521 aatactcctt agaagggttt aaaatcttcc tggcctctag gatgtaatag gataacttac
     5581 tcccttggga tagttactct ctggtgtcat tgccatcctg ggttgaaatg ctgagagagg
     5641 ctacaggtca cctgaataaa atggaaattg cgttgaggtg atgaaacaga ggccttaaag
     5701 atcaagaaaa tatttcaaca gccttttaaa aaattagtgg taaatttttt cttcctggaa
     5761 aaataagtca aagatgtaac tttacacaat ttctaccctt tttattgatc aatattaagc
     5821 attcaatgtt tgatgactaa ttgagacatc aagtcctaac taactggttg gctatttggg
     5881 gaaggaaaaa acaacttttt cttagctctg gaatgtaatg cagcttgtta ctctccagat
     5941 agtgcctttg attgaaaaca aggtctagac cttttaaagt attttatttc tgacatcata
     6001 agaaatgatt tggttcctcg ttcttcttta tctttacata gtgcactata attttcagat
     6061 ttaaagtaaa atgagtgtat gaatcgtgtg ttagtaaagc ccttttatga ccagcttgat
     6121 ttttgtgtaa gtaccaagtg tcaacagcta acatttcatg aaatcagtga tttactttgt
     6181 gaaaacaatg agctttagcc tgaaaattat tgctgctctg tcgttaatga aacagtaagt
     6241 ttttaaaatt aattttaatt taattcattc tactgagatt aaattttctg attaaaaatg
     6301 gagtgaatgc tatttataat ccaacttttt acatcaatcc attgatctac ctaccccttc
     6361 ttttcactcc aaagagagga tagaataata cattagatat actatagaga tgcaaaatta
     6421 taatgtattt cattttactg ttggaatttc ttattgtaac attgtatgat aacctgaaat
     6481 gtttacttgt gcctttgctt taaacaatta aagttttcca ttttataaga a
//
LOCUS       XM_032652180            6498 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ecotropic viral integration site 5
            (EVI5), transcript variant X3, mRNA.
ACCESSION   XM_032652180
VERSION     XM_032652180.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6498
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6498
                     /gene="EVI5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 5
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763954"
     CDS             405..2702
                     /gene="EVI5"
                     /codon_start=1
                     /product="ecotropic viral integration site 5 protein
                     homolog isoform X3"
                     /protein_id="XP_032508071.1"
                     /db_xref="GeneID:116763954"
                     /translation="MASQVASPSASLHTTSSSTTLSTPALSPSSPSQLSPDDLELLAK
                     LEEQNRLLETDSKSLRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWE
                     DVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQYSELLKMTSPCEKLIRR
                     DIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEE
                     AFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYA
                     SSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQH
                     FQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTEN
                     RLLKQHIETLEKHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKR
                     NNSFPDENNIARLQEELIAVKLREAEAITGLKELRQQVKDLEEHWQRHLARTTGRWKD
                     PPKKNAVNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVIN
                     LQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELQQHI
                     AELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHELRCLKGQRGFSGQPPFDGIH
                     IVSHLIGDDESFHSSDEEFIGNSLQESGIGFPLRRKSGLMSLDPTVADGSESEAEDSA
                     LKTRESSEVVQKERPLRSESYSTTV"
     misc_feature    750..1376
                     /gene="EVI5"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; Region: TBC; smart00164"
                     /db_xref="CDD:214540"
     misc_feature    <1479..2381
                     /gene="EVI5"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 ttaagcgcta gggcggcccg gtctctttaa ggccctgccg cgcctgcgcc ttgagccttc
       61 ctgacgcggc cgggccggac ccgggaggag ccggcggcga gcacagtagg ggttgggtgg
      121 tagttgaaac cgcggcggcg cggggggagt gggttagcgt ctgaggcggc cccgagttcc
      181 tgagtgagcg cggcgctcaa gtgggggcgc gaacggcggc cggcggagcc gggagagagg
      241 ccgaggcgct gagacgcggc ggcgcggctg ccggctggat gggaagttaa tgtttacggc
      301 ggagtccacc cagcgtttcc aaggtggcga cagacaaggt tgcagaaaag ttgagttcta
      361 ctctctcatg ggtgaagaac acagtgtcac atacagtcag tcagatggcc agtcaggtgg
      421 caagtccatc tgcttcatta cacactacat cctcatctac cacactgtca acgccagccc
      481 tttcaccatc ttccccgtca cagttgagtc cagacgactt agaactcctg gctaaactgg
      541 aggaacaaaa tagattgtta gaaacagata gtaaatcttt aagatctgta aatggatcaa
      601 gaagaaacag tggctcctcc cttgtatcaa gttcatcagc ctccagcaac ctcagtcacc
      661 ttgaagaaga ctcttggatt ctttggggaa gaattgtgaa tgaatgggaa gatgtgcgca
      721 aaaagaagga aaagcaagtt aaggaacttg ttcgtaaagg gataccccat cattttagag
      781 caatagtttg gcaacttttg tgcagtgcac aaagtatgcc aattaaggat cagtattcag
      841 aactcctgaa aatgacctca ccttgtgaaa aattgatccg aagggacatt gctagaactt
      901 atcctgaaca caattttttt aaggaaaaag atagtcttgg acaggaggtt ttgtttaatg
      961 taatgaaggc ctattcttta gtggatcgtg aggttggtta ctgtcaagga agtgctttta
     1021 tagttggatt gttgcttatg cagatgccag aagaagaagc tttctgtgta tttgttaaat
     1081 taatgcaaga ttatagactt cgtgaacttt ttaaaccaag tatggcagaa ttaggccttt
     1141 gtatgtacca gtttgaatgc atgatacagg agcatcttcc agagctcttt gtgcattttc
     1201 agtctcagag ttttcatacc tcaatgtatg catcatcttg gtttctgact atcttcctta
     1261 cgacttttcc actaccaatt gctacaagga tatttgatat ctttatgtct gagggtttag
     1321 aaatagtgtt tcgggtagga ttagcgcttc ttcaaatgaa tcaggcagaa ctgatgcaac
     1381 tcgacatgga agggatgtta cagcactttc agaaggtcat tccacatcag tttgatggtg
     1441 gtccagacaa attaatccag gcagcttacc aagtcaagta taactcaaaa aaaatgaaaa
     1501 agcttgaaaa ggaatatact acaataaaaa ctaaagaaat ggaagaacaa gttgaaatta
     1561 aaaggttacg cacagaaaac agactattaa aacagcacat tgaaacatta gaaaaacata
     1621 aatgcagttc caactacaat gaagattttg tgctacagct agagaaggaa ttggtccaag
     1681 cccgactgag tgaagctgag tctcagtgtg cactaaagga aatgcaggat aaagttctgg
     1741 atatagaaaa gagaaacaac tcgtttcctg atgagaataa cattgcaagg cttcaggagg
     1801 aactcattgc tgtgaaactg agagaggcag aagctattac gggtttaaaa gaacttagac
     1861 aacaagtcaa agatttagag gaacactggc agcgccactt agctcgtact actgggagat
     1921 ggaaagaccc acctaagaaa aatgctgtga atgagttaca agatgaactg atgaccattc
     1981 gacttagaga agctgaaaca caggcagaaa taagagaaat aaaacaaagg atgatggaaa
     2041 tggaaacaca gaaccagatc aatagtaatc atcttcgaag agcagaacaa gaggtgatca
     2101 atctacagga gaaggtgcag tatctttctg cacagaacaa agggctactt acccaattaa
     2161 gtgaagcaaa gcgcaaacaa gcagagattg aatgcaagaa caaggaagaa gtgatggctg
     2221 tgagactccg ggaagcagat agcatagctg ctgtggctga actacagcag cacattgctg
     2281 agcttgaaat ccagaaagaa gaaggaaagc ttcaagggca gcttaacaag tctgattcta
     2341 accagtacat tagggaactg aaagatcaga tagcagagct gaatcatgag ctcaggtgcc
     2401 taaaaggcca gaggggcttc tccggccaac ccccttttga tggaatccac atcgtcagcc
     2461 atttaatagg agatgatgaa tcattccatt cctctgatga agagttcata ggtaattcct
     2521 tacaggaaag tggcattggt tttcctttgc gcagaaaatc tggcctgatg tctttggacc
     2581 ctactgtggc agatggtagt gaaagcgaag cagaagacag tgcgctgaag accagagaga
     2641 gcagtgaagt ggttcaaaag gagcggcccc tgagaagcga gtcgtactca accactgtct
     2701 gaccatcact gtgacctaga ctgtggattt ttttaaggga tcagttatca tgactaaggg
     2761 tttttggaac acatctgttt catatgtata tatatataaa tatatatatt ttacaatctt
     2821 aactgccttt ttatctttgc caaatcttca ccactgactt accattgcta taaagtagag
     2881 tggaatatgg ttaatgggaa aaataaggtt ctagcagtat tactaaatat taatgtttct
     2941 tgtttagaaa atgcaattat atctatatgt gggaaccatt ttgaagttca gaactgtgga
     3001 aaattgaatt ttcttcagac aaaactgttc ttgtgcaata ttttatgctc agtgaacaaa
     3061 ttgtatattt atgtttatca gtttgttttc agggtggctg tctacacaca tttgaccaag
     3121 actgatttac atctgattta tcttggtttt tttgtgtttg gggaattttt tttttcaact
     3181 aaaattattg ctttattaat gggtcattga aaattcccaa acgcaaagcc tttttttcac
     3241 ataattttat aaacacaaat taatggttat ctgtcttgag aattctaaat tttgttttaa
     3301 tttcagattt ttatgtgcac ctgatgcttc tgtatgttgc ctaccagtca gagtagtaag
     3361 ttaactacaa atatagtggg tttttgtaca tatttataaa tctgcaccat gcaacattga
     3421 acattttatg tggagaatgt atctgttgca agatgactgc cttcagcatt ataaaaggac
     3481 ctctgtaaaa ggttaaaaga aaattgaaaa taaaaccaaa cactaatatt ttaatagctt
     3541 tagaattttg cttagcatgc aacactagca gattcataac tgatgcttgt tcaaagacac
     3601 tattgatgaa atcttttact tcatatgtat gtaactaata aatttttcat gattagagag
     3661 gtaatagcac acattactta gtgctaatat tctacttaat ataatttaat caatggactg
     3721 aggtccacaa tacacagcaa ttgtatctgc aaataatcta tgaacattat cttcagattc
     3781 tctagttact aatctataga taaagcaagc cataagaatc ctttcctacc aattctttat
     3841 tatctagact ttttttccct agaaaactga atgcctctca ttgataaatt agaggaaaca
     3901 cccaaactac acctgtacta tggaaagact acaaaaatgt gttgactgga tgctttctac
     3961 tctcattttc aacagcagcc tacggaaaaa aaaaaataac cttcaagaat aagaggaagg
     4021 tagaattcaa taaatatgga ggtacagttt tgcacgatat gttgcatgca gagaaaaaaa
     4081 aaattacatg acacaatgga acagaagaga caaaaatagt tttctgtcta aaccaaggag
     4141 ttaaggctta tggtgcattg tagaccagag tttcccagca aaccctttat agccgttttg
     4201 cttgagaaac aagattgaaa acatgcctat tgtctccata gctccaggct aaattctagt
     4261 ggttaagtaa tttacctgtg gtcacaagtt agtaagtgat cagagccaag attttaatcc
     4321 aaattgctct gacaccaaag catttgaaaa ggctcagcta atgaatttct caattccctg
     4381 cttttctgac agttaatgtg atttaaataa gtttgattta aattgtttcc tgaatatatt
     4441 atatagatat gtatctatat gtatagatat gcaagtatca acactcataa gctttacgca
     4501 gctcatgaac atagatacta ctcctagaat tgtctgactg gtgcctttga gattctctct
     4561 tggggttcat tgctatcagt ctagaggctg ttgatgccca agtgaaatga ggtgattcat
     4621 ggccacatga ttgctttgac cccccacatc aagaaatccg aatgatccag cccatgagcc
     4681 agttccagcc aacatcctgt tttcacgtga cccacaagct aagaatgatt tttacctttt
     4741 taaagagttg aggaaaaaat caaaataata atattttgtg tcacatgaaa atcatgacat
     4801 tcaaatttca gtgtctaagt tttattggcg catacccatg cttattcact tgcattttgt
     4861 ctgtggctgc ttttgtgcca cagtagcaaa gttgagtagc ttaaaatatc tattatctgt
     4921 ccctttagag aaagtttgca gaccttaatt tagatactct aaaatgtagg tttacctctt
     4981 cagtttgtct caagtagaag actgaaccat ttgcttttgc tgttgagcta atggtttgga
     5041 aacctaaaat ttcctggtgg atcctgtact tataactatt caacatggag agtgtgccag
     5101 ctattttaga ttacaaagtc ttcgaagcca tagacaaatt tggaagggta tctgtgcctt
     5161 tggaaatgga gaaagaaagg aaagaatacc agaatcctag cactgttctt gaaagcatgc
     5221 atcattgatt gacctttagg tttatgcttt atgcttcact gagtcagtgt tataatttga
     5281 ctttaaaagt aagaacatct ttctagaacc atgtttcaat tctaaacttt gaaagatatt
     5341 cttaaagaat ttcctaagta ctgtttctgg ttaggaatga gttgttaaaa gaatcatggt
     5401 aagtaaacct tactctgttg agactcttgt aatttggata atgaaaaact agaaacgaca
     5461 atcttctcat tcaagatctt tgattcaaat actccttaga agggtttaaa atcttcctgg
     5521 cctctaggat gtaataggat aacttactcc cttgggatag ttactctctg gtgtcattgc
     5581 catcctgggt tgaaatgctg agagaggcta caggtcacct gaataaaatg gaaattgcgt
     5641 tgaggtgatg aaacagaggc cttaaagatc aagaaaatat ttcaacagcc ttttaaaaaa
     5701 ttagtggtaa attttttctt cctggaaaaa taagtcaaag atgtaacttt acacaatttc
     5761 tacccttttt attgatcaat attaagcatt caatgtttga tgactaattg agacatcaag
     5821 tcctaactaa ctggttggct atttggggaa ggaaaaaaca actttttctt agctctggaa
     5881 tgtaatgcag cttgttactc tccagatagt gcctttgatt gaaaacaagg tctagacctt
     5941 ttaaagtatt ttatttctga catcataaga aatgatttgg ttcctcgttc ttctttatct
     6001 ttacatagtg cactataatt ttcagattta aagtaaaatg agtgtatgaa tcgtgtgtta
     6061 gtaaagccct tttatgacca gcttgatttt tgtgtaagta ccaagtgtca acagctaaca
     6121 tttcatgaaa tcagtgattt actttgtgaa aacaatgagc tttagcctga aaattattgc
     6181 tgctctgtcg ttaatgaaac agtaagtttt taaaattaat tttaatttaa ttcattctac
     6241 tgagattaaa ttttctgatt aaaaatggag tgaatgctat ttataatcca actttttaca
     6301 tcaatccatt gatctaccta ccccttcttt tcactccaaa gagaggatag aataatacat
     6361 tagatatact atagagatgc aaaattataa tgtatttcat tttactgttg gaatttctta
     6421 ttgtaacatt gtatgataac ctgaaatgtt tacttgtgcc tttgctttaa acaattaaag
     6481 ttttccattt tataagaa
//
LOCUS       XM_032652186            6456 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ecotropic viral integration site 5
            (EVI5), transcript variant X4, mRNA.
ACCESSION   XM_032652186
VERSION     XM_032652186.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6456
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6456
                     /gene="EVI5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 1
                     Protein, and 98% coverage of the annotated genomic feature
                     by RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116763954"
     CDS             405..2660
                     /gene="EVI5"
                     /codon_start=1
                     /product="ecotropic viral integration site 5 protein
                     homolog isoform X4"
                     /protein_id="XP_032508077.1"
                     /db_xref="GeneID:116763954"
                     /translation="MASQVASPSASLHTTSSSTTLSTPALSPSSPSQLSPDDLELLAK
                     LEEQNRLLETDSKSLRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWE
                     DVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQYSELLKMTSPCEKLIRR
                     DIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEE
                     AFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYA
                     SSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQH
                     FQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTEN
                     RLLKQHIETLEKLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSFPDENNIARLQ
                     EELIAVKLREAEAITGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAVNELQDEL
                     MTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVINLQEKVQYLSAQNKG
                     LLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQG
                     QLNKSDSNQYIRELKDQIAELNHELRCLKGQRGFSGQPPFDGIHIVSHLIGDDESFHS
                     SDEEFIGNSLQESGIGFPLRRKSGLMSLDPTVADGSESEAEDSALKTRESSEVVQKER
                     PLRSESYSTTV"
     misc_feature    750..1376
                     /gene="EVI5"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; Region: TBC; smart00164"
                     /db_xref="CDD:214540"
     misc_feature    <1488..>2372
                     /gene="EVI5"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 ttaagcgcta gggcggcccg gtctctttaa ggccctgccg cgcctgcgcc ttgagccttc
       61 ctgacgcggc cgggccggac ccgggaggag ccggcggcga gcacagtagg ggttgggtgg
      121 tagttgaaac cgcggcggcg cggggggagt gggttagcgt ctgaggcggc cccgagttcc
      181 tgagtgagcg cggcgctcaa gtgggggcgc gaacggcggc cggcggagcc gggagagagg
      241 ccgaggcgct gagacgcggc ggcgcggctg ccggctggat gggaagttaa tgtttacggc
      301 ggagtccacc cagcgtttcc aaggtggcga cagacaaggt tgcagaaaag ttgagttcta
      361 ctctctcatg ggtgaagaac acagtgtcac atacagtcag tcagatggcc agtcaggtgg
      421 caagtccatc tgcttcatta cacactacat cctcatctac cacactgtca acgccagccc
      481 tttcaccatc ttccccgtca cagttgagtc cagacgactt agaactcctg gctaaactgg
      541 aggaacaaaa tagattgtta gaaacagata gtaaatcttt aagatctgta aatggatcaa
      601 gaagaaacag tggctcctcc cttgtatcaa gttcatcagc ctccagcaac ctcagtcacc
      661 ttgaagaaga ctcttggatt ctttggggaa gaattgtgaa tgaatgggaa gatgtgcgca
      721 aaaagaagga aaagcaagtt aaggaacttg ttcgtaaagg gataccccat cattttagag
      781 caatagtttg gcaacttttg tgcagtgcac aaagtatgcc aattaaggat cagtattcag
      841 aactcctgaa aatgacctca ccttgtgaaa aattgatccg aagggacatt gctagaactt
      901 atcctgaaca caattttttt aaggaaaaag atagtcttgg acaggaggtt ttgtttaatg
      961 taatgaaggc ctattcttta gtggatcgtg aggttggtta ctgtcaagga agtgctttta
     1021 tagttggatt gttgcttatg cagatgccag aagaagaagc tttctgtgta tttgttaaat
     1081 taatgcaaga ttatagactt cgtgaacttt ttaaaccaag tatggcagaa ttaggccttt
     1141 gtatgtacca gtttgaatgc atgatacagg agcatcttcc agagctcttt gtgcattttc
     1201 agtctcagag ttttcatacc tcaatgtatg catcatcttg gtttctgact atcttcctta
     1261 cgacttttcc actaccaatt gctacaagga tatttgatat ctttatgtct gagggtttag
     1321 aaatagtgtt tcgggtagga ttagcgcttc ttcaaatgaa tcaggcagaa ctgatgcaac
     1381 tcgacatgga agggatgtta cagcactttc agaaggtcat tccacatcag tttgatggtg
     1441 gtccagacaa attaatccag gcagcttacc aagtcaagta taactcaaaa aaaatgaaaa
     1501 agcttgaaaa ggaatatact acaataaaaa ctaaagaaat ggaagaacaa gttgaaatta
     1561 aaaggttacg cacagaaaac agactattaa aacagcacat tgaaacatta gaaaaactag
     1621 agaaggaatt ggtccaagcc cgactgagtg aagctgagtc tcagtgtgca ctaaaggaaa
     1681 tgcaggataa agttctggat atagaaaaga gaaacaactc gtttcctgat gagaataaca
     1741 ttgcaaggct tcaggaggaa ctcattgctg tgaaactgag agaggcagaa gctattacgg
     1801 gtttaaaaga acttagacaa caagtcaaag atttagagga acactggcag cgccacttag
     1861 ctcgtactac tgggagatgg aaagacccac ctaagaaaaa tgctgtgaat gagttacaag
     1921 atgaactgat gaccattcga cttagagaag ctgaaacaca ggcagaaata agagaaataa
     1981 aacaaaggat gatggaaatg gaaacacaga accagatcaa tagtaatcat cttcgaagag
     2041 cagaacaaga ggtgatcaat ctacaggaga aggtgcagta tctttctgca cagaacaaag
     2101 ggctacttac ccaattaagt gaagcaaagc gcaaacaagc agagattgaa tgcaagaaca
     2161 aggaagaagt gatggctgtg agactccggg aagcagatag catagctgct gtggctgaac
     2221 tacagcagca cattgctgag cttgaaatcc agaaagaaga aggaaagctt caagggcagc
     2281 ttaacaagtc tgattctaac cagtacatta gggaactgaa agatcagata gcagagctga
     2341 atcatgagct caggtgccta aaaggccaga ggggcttctc cggccaaccc ccttttgatg
     2401 gaatccacat cgtcagccat ttaataggag atgatgaatc attccattcc tctgatgaag
     2461 agttcatagg taattcctta caggaaagtg gcattggttt tcctttgcgc agaaaatctg
     2521 gcctgatgtc tttggaccct actgtggcag atggtagtga aagcgaagca gaagacagtg
     2581 cgctgaagac cagagagagc agtgaagtgg ttcaaaagga gcggcccctg agaagcgagt
     2641 cgtactcaac cactgtctga ccatcactgt gacctagact gtggattttt ttaagggatc
     2701 agttatcatg actaagggtt tttggaacac atctgtttca tatgtatata tatataaata
     2761 tatatatttt acaatcttaa ctgccttttt atctttgcca aatcttcacc actgacttac
     2821 cattgctata aagtagagtg gaatatggtt aatgggaaaa ataaggttct agcagtatta
     2881 ctaaatatta atgtttcttg tttagaaaat gcaattatat ctatatgtgg gaaccatttt
     2941 gaagttcaga actgtggaaa attgaatttt cttcagacaa aactgttctt gtgcaatatt
     3001 ttatgctcag tgaacaaatt gtatatttat gtttatcagt ttgttttcag ggtggctgtc
     3061 tacacacatt tgaccaagac tgatttacat ctgatttatc ttggtttttt tgtgtttggg
     3121 gaattttttt tttcaactaa aattattgct ttattaatgg gtcattgaaa attcccaaac
     3181 gcaaagcctt tttttcacat aattttataa acacaaatta atggttatct gtcttgagaa
     3241 ttctaaattt tgttttaatt tcagattttt atgtgcacct gatgcttctg tatgttgcct
     3301 accagtcaga gtagtaagtt aactacaaat atagtgggtt tttgtacata tttataaatc
     3361 tgcaccatgc aacattgaac attttatgtg gagaatgtat ctgttgcaag atgactgcct
     3421 tcagcattat aaaaggacct ctgtaaaagg ttaaaagaaa attgaaaata aaaccaaaca
     3481 ctaatatttt aatagcttta gaattttgct tagcatgcaa cactagcaga ttcataactg
     3541 atgcttgttc aaagacacta ttgatgaaat cttttacttc atatgtatgt aactaataaa
     3601 tttttcatga ttagagaggt aatagcacac attacttagt gctaatattc tacttaatat
     3661 aatttaatca atggactgag gtccacaata cacagcaatt gtatctgcaa ataatctatg
     3721 aacattatct tcagattctc tagttactaa tctatagata aagcaagcca taagaatcct
     3781 ttcctaccaa ttctttatta tctagacttt ttttccctag aaaactgaat gcctctcatt
     3841 gataaattag aggaaacacc caaactacac ctgtactatg gaaagactac aaaaatgtgt
     3901 tgactggatg ctttctactc tcattttcaa cagcagccta cggaaaaaaa aaaataacct
     3961 tcaagaataa gaggaaggta gaattcaata aatatggagg tacagttttg cacgatatgt
     4021 tgcatgcaga gaaaaaaaaa attacatgac acaatggaac agaagagaca aaaatagttt
     4081 tctgtctaaa ccaaggagtt aaggcttatg gtgcattgta gaccagagtt tcccagcaaa
     4141 ccctttatag ccgttttgct tgagaaacaa gattgaaaac atgcctattg tctccatagc
     4201 tccaggctaa attctagtgg ttaagtaatt tacctgtggt cacaagttag taagtgatca
     4261 gagccaagat tttaatccaa attgctctga caccaaagca tttgaaaagg ctcagctaat
     4321 gaatttctca attccctgct tttctgacag ttaatgtgat ttaaataagt ttgatttaaa
     4381 ttgtttcctg aatatattat atagatatgt atctatatgt atagatatgc aagtatcaac
     4441 actcataagc tttacgcagc tcatgaacat agatactact cctagaattg tctgactggt
     4501 gcctttgaga ttctctcttg gggttcattg ctatcagtct agaggctgtt gatgcccaag
     4561 tgaaatgagg tgattcatgg ccacatgatt gctttgaccc cccacatcaa gaaatccgaa
     4621 tgatccagcc catgagccag ttccagccaa catcctgttt tcacgtgacc cacaagctaa
     4681 gaatgatttt taccttttta aagagttgag gaaaaaatca aaataataat attttgtgtc
     4741 acatgaaaat catgacattc aaatttcagt gtctaagttt tattggcgca tacccatgct
     4801 tattcacttg cattttgtct gtggctgctt ttgtgccaca gtagcaaagt tgagtagctt
     4861 aaaatatcta ttatctgtcc ctttagagaa agtttgcaga ccttaattta gatactctaa
     4921 aatgtaggtt tacctcttca gtttgtctca agtagaagac tgaaccattt gcttttgctg
     4981 ttgagctaat ggtttggaaa cctaaaattt cctggtggat cctgtactta taactattca
     5041 acatggagag tgtgccagct attttagatt acaaagtctt cgaagccata gacaaatttg
     5101 gaagggtatc tgtgcctttg gaaatggaga aagaaaggaa agaataccag aatcctagca
     5161 ctgttcttga aagcatgcat cattgattga cctttaggtt tatgctttat gcttcactga
     5221 gtcagtgtta taatttgact ttaaaagtaa gaacatcttt ctagaaccat gtttcaattc
     5281 taaactttga aagatattct taaagaattt cctaagtact gtttctggtt aggaatgagt
     5341 tgttaaaaga atcatggtaa gtaaacctta ctctgttgag actcttgtaa tttggataat
     5401 gaaaaactag aaacgacaat cttctcattc aagatctttg attcaaatac tccttagaag
     5461 ggtttaaaat cttcctggcc tctaggatgt aataggataa cttactccct tgggatagtt
     5521 actctctggt gtcattgcca tcctgggttg aaatgctgag agaggctaca ggtcacctga
     5581 ataaaatgga aattgcgttg aggtgatgaa acagaggcct taaagatcaa gaaaatattt
     5641 caacagcctt ttaaaaaatt agtggtaaat tttttcttcc tggaaaaata agtcaaagat
     5701 gtaactttac acaatttcta ccctttttat tgatcaatat taagcattca atgtttgatg
     5761 actaattgag acatcaagtc ctaactaact ggttggctat ttggggaagg aaaaaacaac
     5821 tttttcttag ctctggaatg taatgcagct tgttactctc cagatagtgc ctttgattga
     5881 aaacaaggtc tagacctttt aaagtatttt atttctgaca tcataagaaa tgatttggtt
     5941 cctcgttctt ctttatcttt acatagtgca ctataatttt cagatttaaa gtaaaatgag
     6001 tgtatgaatc gtgtgttagt aaagcccttt tatgaccagc ttgatttttg tgtaagtacc
     6061 aagtgtcaac agctaacatt tcatgaaatc agtgatttac tttgtgaaaa caatgagctt
     6121 tagcctgaaa attattgctg ctctgtcgtt aatgaaacag taagttttta aaattaattt
     6181 taatttaatt cattctactg agattaaatt ttctgattaa aaatggagtg aatgctattt
     6241 ataatccaac tttttacatc aatccattga tctacctacc ccttcttttc actccaaaga
     6301 gaggatagaa taatacatta gatatactat agagatgcaa aattataatg tatttcattt
     6361 tactgttgga atttcttatt gtaacattgt atgataacct gaaatgttta cttgtgcctt
     6421 tgctttaaac aattaaagtt ttccatttta taagaa
//
LOCUS       XM_032652199            2608 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus forkhead box D2 (FOXD2), mRNA.
ACCESSION   XM_032652199
VERSION     XM_032652199.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2608
                     /gene="FOXD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 27
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116763967"
     CDS             75..1532
                     /gene="FOXD2"
                     /codon_start=1
                     /product="forkhead box protein D2"
                     /protein_id="XP_032508090.1"
                     /db_xref="GeneID:116763967"
                     /translation="MTLGSCCCEIMSSESSPAALSEADADIDVVGGGGGSVGGEPPAR
                     SGPRAPRDLLPHGPEPPPEEAEGDAADDEEESGGCSDGEPRALAPRGAAAAAGSLGPG
                     TAAARGAAGPGPGPPSGGAATRSPLVKPPYSYIALITMAILQSPKKRLTLSEICEFIS
                     GRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSF
                     LRRRKRFKRQPLPPPHPHTHPHPELLLRGGAAAAGDAGAFLPGFAAYGAYGYGYGLAL
                     PAYGAPPPGPAPHPHPHPHAFAFAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAASA
                     PAPAPAPGTGSGPGPSGLPAFLGAELGCAKAFYPASLSPPAAGTALLRQGLKTDAGGG
                     GAGAGQRPSFSIDHIMGHGGGGAVPPGGGEGSPGSPFSAAAGPGGQAQVLAMLTTPAL
                     APVAGHIRLSHHGDALLSSGPPFAGKVAGLSGCHF"
     misc_feature    459..755
                     /gene="FOXD2"
                     /note="Forkhead (FH) domain found in Forkhead box proteins
                     FOXD1, FOXD2 and similar proteins; Region:
                     FH_FOXD1_D2-like; cd20046"
                     /db_xref="CDD:410820"
     misc_feature    order(462..479,528..533,585..590,594..602,606..614,
                     621..623,639..656,660..662,666..683,732..746)
                     /gene="FOXD2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410820"
ORIGIN      
        1 cacactcgcc ccagaggcag cgcggcggag cccgagccgc ggccggagcg gagccggtga
       61 gcggcggtgg caccatgacc ctgggcagct gctgctgcga gatcatgtcc tccgagagct
      121 ccccggccgc gctgtccgag gccgacgcag atatagacgt ggtgggcggc ggcggcggca
      181 gcgttggggg ggagccccct gcccgttccg gaccccgcgc cccccgggac ctactccccc
      241 acggccccga gcctcctcca gaggaagccg agggggacgc cgctgacgac gaagaggaat
      301 ccggcggctg ctcggacggc gagccccgcg ctctagcgcc ccgaggggcg gcggccgcag
      361 cgggaagcct agggccaggc actgcggccg cccggggcgc ggcggggccc gggcccggac
      421 cgccgtcggg gggcgcggcg actcggagcc cgctggtgaa gccgccctac tcgtacatcg
      481 cgctcatcac catggccatc ctgcagagcc ccaagaagcg cttgacgctg agcgagatct
      541 gcgagttcat cagcggccgc ttcccctact accgggagaa attccccgcc tggcagaaca
      601 gcatccgcca caacctatcg ctcaacgact gcttcgtcaa gattccccgc gagccgggca
      661 acccgggcaa gggcaactac tggacgctcg acccggagtc ggccgacatg ttcgacaacg
      721 gcagcttcct gcggcgccgc aagcgcttta agcggcagcc gctaccgccg ccgcatccac
      781 acacgcaccc tcaccctgag ctgctgttgc gcggcggggc tgcggcggcg ggggacgccg
      841 gcgccttcct gccgggcttc gcggcttatg gcgcctacgg ctacggctac gggctagcgc
      901 tcccggccta cggcgcaccc ccgccgggcc cggctccgca cccgcatcca cacccgcacg
      961 ccttcgcttt cgccgccgcc gctgcacctt gccagctgtc ggtaccccca ggccgtgccg
     1021 cggcgcctcc acccggacct ccgacggctt cggtgttcgc gggcgcagcc tcggctccgg
     1081 cccctgcgcc tgcgccgggc acaggatcgg gcccaggccc ctcaggcctg ccagccttcc
     1141 taggcgcgga gcttggctgc gccaaagcct tctaccccgc gtccctgagc cctcccgcag
     1201 caggcaccgc gctcctgcgc cagggcctca agacggacgc gggcggcggg ggcgccgggg
     1261 ccgggcagag gccttccttc tctatagacc acatcatggg ccacggtggc ggcggggcag
     1321 tacccccggg cgggggcgag ggctccccgg gatcgccgtt ttcggcggcg gcaggtcctg
     1381 ggggtcaggc ccaggtcttg gccatgctga ctaccccggc cctagctcca gtggccggcc
     1441 acatccgcct ctcgcaccac ggggacgcgc tcctgtcctc agggcccccg tttgccggca
     1501 aagtagcagg cctcagtggc tgccacttct gaccgtgtcg ggatctgggc cactgaagcc
     1561 cgcactcctc agtctctccc gggagctcct gcggtcgcag tggaactcag ggagtctatt
     1621 tatgaagcgt ctccagacct tgggccggcg cgcgtgactt agcacttcag gctccacgct
     1681 cataatctct ccgatagttg ggacgaagcg ggctccgtcg ctcagtggga ggcccgggtc
     1741 tatgcgacga ggtcgctagc catgatcccg ttccagtttg agcagtaaaa gggtgagggg
     1801 gaagtcttcg cttttcccca gtctctgcgc ctctcggcag ccccggaaga atgctctccc
     1861 ggagaggtgc ccgcccaggc ccggcagatc ccgccagaaa caccaacttc gcagagaggt
     1921 ctccctttct gcctctccca cactccttcc ccgactttga ggccctgatt gtccaatatt
     1981 ataatttaaa gacacctatt atctgctttg tgcttaaaag aaaaattcaa cttttttttt
     2041 tccttgctgt tctccaagga acttcgttct cttggaagcc tacagcaatg tctacacagg
     2101 cgaagttgaa cggacaggtg aagcgaggcc tcggtctcca caatccgtgc gcaatcccgg
     2161 aatcccactc cattgaggaa aatcgtccct cttttgtgtt ggggcgcttt tgaaggaact
     2221 ttaccccttt cctgtggccg gctgggtcca gccatccagg gccagcagcc ctctcagcgg
     2281 tctgctacgt cccaggccct gggatattta ttgtagctaa aggaaatgag gttggggtgg
     2341 gagaggaggg tctgggtcag ggactggaga ggcggggggc ggccagggca catcctgtgg
     2401 caggggtcct gtaattatgt gtaaatatct gtacagcggg ctgctatctg cattctctgt
     2461 ccactgggtg tgcattgatt tagacttctc cacttgggga gactctgtga aactgtctga
     2521 aggtttgtgt ggaagaaaag aaaaacctgt ctccccccac cccactcccc attggtgtca
     2581 attgaataaa tgtacgtgaa ctccagca
//
LOCUS       XM_032652206            5338 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus natriuretic peptide receptor 1 (NPR1),
            transcript variant X1, mRNA.
ACCESSION   XM_032652206
VERSION     XM_032652206.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5338
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5338
                     /gene="NPR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763973"
     CDS             1541..4720
                     /gene="NPR1"
                     /codon_start=1
                     /product="atrial natriuretic peptide receptor 1 isoform
                     X1"
                     /protein_id="XP_032508097.1"
                     /db_xref="GeneID:116763973"
                     /translation="MPRPGCPSGARLRLLLLLPLLLLLPGSYAGNLTVAVVLPLANTS
                     YPWSWARVGPAVELALARVKARPDLLPGWTVRTVLGSSESALGVCSDTAAPLAAVDLK
                     WEHNPAVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPAVGFGAKDEYALTTRAGPSHA
                     KLGDFVAALHRRLGWERQALVLYAYQPRDDQPCFFVVEGLYMQVRDRLNITVDHLEFA
                     EGDRDHYTMLLRTVRRKGRVVYICSSPDTFRTLMLLALEAGLSGEDYVFFHLDLFGQS
                     LQGAHGLAPHRPWERGDGQDVSAHQAFQAAKIITYKEPDNPEYLEFLQKLKHLAHEQF
                     NFTMEDGLVNTIPASFHDGLLLYVQAVSETLAHGGTVTDGEGITQRMWNRSFQGVTGY
                     LKMDSNGDRETDFSLWDMDPDTGAFRVVLNFNGTSQELVTVSGCKLNWPLGYPPPDVP
                     KCGFDNEDPACNQDHFSTLEVLALVGSLSLLSILIISFFIYRKMQLEKELASELWRVR
                     WEDLQPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQIFAKTAYYKGNLVAVKRV
                     NRKRIELTREVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQQDILEN
                     ESITLDWMFRYSLTHDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESF
                     RDPEPEQGHTLYAKKLWTAPELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFHVE
                     GLDLSPKEIIERVTRGEQPPFRPSLALQSHLEELGQLMQRCWAEDPQERPPFQQIRLM
                     LRKSNRENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVA
                     EQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFD
                     VYKVETIGDAYMVVSGLPVRNGRLHAREVARMALALLDAVRSFRIRHRPQEQLRLRIG
                     IHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFEL
                     ELRGDVEMKGKGKVRTYWLLGERASSTRG"
     misc_feature    1637..2860
                     /gene="NPR1"
                     /note="Ligand-binding domain of type A natriuretic peptide
                     receptor; Region: PBP1_NPR_A; cd06385"
                     /db_xref="CDD:380608"
     misc_feature    order(1784..1786,1880..1885)
                     /gene="NPR1"
                     /note="Cl binding site [ion binding]; other site"
                     /db_xref="CDD:380608"
     misc_feature    order(1826..1828,1838..1840,1886..1891,1898..1900,
                     1910..1912,1922..1927,2120..2125,2132..2134,2141..2143)
                     /gene="NPR1"
                     /note="dimer interface (closed form) [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380608"
     misc_feature    order(1886..1891,1898..1900,1910..1912,1964..1969,
                     2099..2101,2120..2125,2132..2134,2141..2146,2180..2182)
                     /gene="NPR1"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:380608"
     misc_feature    order(2225..2230,2288..2290,2309..2311)
                     /gene="NPR1"
                     /note="dimer interface (open form) [polypeptide binding];
                     other site"
                     /db_xref="CDD:380608"
     misc_feature    3131..3955
                     /gene="NPR1"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptors, GC-A and GC-B; Region: PK_GC-A_B;
                     cd14042"
                     /db_xref="CDD:270944"
     misc_feature    <3971..4117
                     /gene="NPR1"
                     /note="Heme NO binding associated; Region: HNOBA;
                     pfam07701"
                     /db_xref="CDD:462234"
     misc_feature    4052..4630
                     /gene="NPR1"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     Region: CYCc; smart00044"
                     /db_xref="CDD:214485"
     misc_feature    order(4169..4171,4175..4192,4295..4297,4301..4309,
                     4316..4318,4511..4519,4529..4534,4541..4546,4655..4657)
                     /gene="NPR1"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     misc_feature    order(4175..4177,4307..4309)
                     /gene="NPR1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143636"
     misc_feature    order(4190..4192,4226..4228,4235..4240,4247..4249,
                     4259..4261,4295..4300,4475..4477,4484..4486,4514..4525,
                     4532..4534,4655..4657)
                     /gene="NPR1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143636"
ORIGIN      
        1 tttgtcccaa atagagctcc tcaaatgtat ggaccatata tacatgatat atatgagata
       61 catatatata tacacacaca cacatatata tatagtctta atctttatac cttcagccgg
      121 tgcttaacac gtactaggtc ctctggaaat ctgcagtacg gaagaaattt cctgatcttt
      181 ggtcttgcct aggtacaggc ttgcagaggt tggcagcgca atacggtcaa cgacttctgc
      241 tggccattag agggcagact gattccgcag ctctccggcc cccagcccag ccgtcaaggg
      301 ccccaaaata ctctccccaa tttacccctc cgcttgtcat ttccaacact gtctcccacc
      361 gccccgacaa atcccatttt aataatcctc ctcaagacaa acacacactc acacgccggc
      421 agtgaccctg agatcacacc tgttcgctct tccagccacc cgcaagctct ccctccccgt
      481 tcctacagcc attggggaac taaagagtta actccgccct tctacctggt cctttttctc
      541 cgctaatccg ctcaatctgt aaaccggagg tggggggggg gtagatccta gatggactgg
      601 ttacggggac cctggattca cctactttaa cgccttttcc agaaaccgtc accctcccgc
      661 accaccccga cacacatcca aacacacact ttttcctacc aagatcccaa accagcacct
      721 ctttctctct tccccagacg gaaccaggta ggaggggagg gaaaggtggg gcgcaagagg
      781 ccctctgttg ttcccacaga cttctctatt ccgttcttcc cgacccggca acagagcccc
      841 ttctacccgt gccactcctc ggaggaggaa gaagtttgtc cgccgagaag cgcgaagagg
      901 ctctaaagga aagtgcgcgg gctgagagac tcggaagagc ccgcgacttc ggggcgggga
      961 cgaaggagtt aaagatccag gattggttct aaggtcacgg agtctgggag gggaagcggc
     1021 cgggagggag ggttcggagc ttggcttggg tcctccccag cacccccccg gactgccgga
     1081 gacttgggcc ggccggacgc cccttctggc acactctctg ggccaggcgc tcacgcacac
     1141 atacaaacac tcacactccc ctttccctcc ctggcgccct ctcccatcct tctccacgga
     1201 gcgctcgctc gcgctctcgt tttctctctc ctaacacaca catacacaca cacacacaca
     1261 cacgctctcg ctcacactcg cgtcctctcg gcccccgctc tctcctcgca cccacctgct
     1321 ctgcagcgcc ctgggcgcac ccctcggtcg cgcgcccctg gcgctcctgg cgcagactgt
     1381 cacagctaga aggggcagcg tgcctcgggg tgagcgcccc cgccccgctc gtcctccctc
     1441 ccacaggggc gctcctggtg cccagcatgg gccgctgagc cggaggggac gccagaggcc
     1501 atggtgggag cgcttgtccg cctcggtgcc cgctgaggcc atgccgcgcc ccggctgccc
     1561 ctccggcgcc cgcctgcgcc tgcttctgct cctgccgctg ctgctgctgc tcccaggcag
     1621 ctacgcgggc aacctgacgg tggccgtggt gctacctctg gccaacacct cgtacccgtg
     1681 gtcgtgggcg cgcgtgggac cggcggtgga gctggccctg gcccgggtga aggcgcggcc
     1741 ggacctgctg ccgggctgga cagtccgcac ggtgctgggc agcagcgaga gcgcgctggg
     1801 cgtctgctcc gacaccgccg cgcccctggc cgccgtggac ctcaagtggg agcacaaccc
     1861 cgcggtgttc ctgggccccg gctgcgtgta cgccgccgcc cccgtgggcc gcttcactgc
     1921 gcactggcgg gtgccgctgc tgaccgccgg cgccccggct gtggggttcg gggccaagga
     1981 cgagtacgcg ctgaccaccc gcgccgggcc cagccatgcc aagctgggcg acttcgtggc
     2041 ggctctgcac cgacggctgg gctgggagcg ccaggctcta gtgctctacg cctaccagcc
     2101 ccgcgacgac cagccctgct tcttcgtggt ggaggggctg tacatgcagg tccgcgaccg
     2161 cctcaacatc acggtggacc acctggagtt cgccgagggc gaccgcgacc actacaccat
     2221 gctgctgcgc accgtgcgac gcaaaggccg agttgtctac atctgcagct ccccagacac
     2281 cttcagaacc ctgatgcttc tggccctgga agctggcctg agtggggagg actatgtttt
     2341 cttccacctg gacctctttg ggcaaagcct gcaaggagca catggccttg ctccccacag
     2401 gccctgggag agaggagatg ggcaggatgt cagtgcccac caggcctttc aggctgccaa
     2461 aatcattaca tataaagagc cggataatcc tgagtacttg gaattcctac agaagctaaa
     2521 acacttggcc catgagcagt tcaacttcac catggaggat ggcctggtga acaccatccc
     2581 agcgtccttc cacgacgggc tcctgctcta tgtccaggca gtgtcggaga ctctagcaca
     2641 tgggggaact gtcaccgatg gggagggcat cactcagcgg atgtggaacc gaagcttcca
     2701 aggtgtgaca ggatacctga aaatggacag caatggagat cgggagactg acttctccct
     2761 ctgggatatg gatcctgaca ctggcgcctt cagggttgtt ctgaacttca atggaacctc
     2821 ccaagagctg gtgaccgtgt cagggtgcaa actgaactgg cctctggggt atccacctcc
     2881 tgatgtgccc aaatgtggtt ttgacaatga ggacccagcc tgcaaccaag accacttttc
     2941 caccctggag gtgctggctt tggtgggcag cctctccctg ctcagcattc tgatcatctc
     3001 cttcttcata tacagaaaga tgcagctgga gaaggaactg gcctcagagc tgtggcgggt
     3061 gcgttgggag gacctgcagc ccagcagcct agagaggcac ctccggagtg caggcagccg
     3121 gctgaccctg agcgggagag gctccaatta cggctccctg ctgaccacag agggccagtt
     3181 ccaaatcttt gccaagacag catattataa gggtaacctc gtggctgtga aacgtgtgaa
     3241 ccgtaaacgc attgagctga cgcgggaagt cctgtttgag ctgaagcata tgcgggatgt
     3301 gcagaacgaa cacctgacca ggtttgtggg ggcctgcact gaccccccca atatctgtat
     3361 cctcacagag tactgtcccc gtgggagctt gcagcaggat atcctggaga atgagagcat
     3421 caccctggac tggatgttcc ggtactcgct cacccatgac atcgtcaagg gtatgctgtt
     3481 cctgcacaac ggggccattt gctcccatgg gaacctcaag tcatccaact gcgtggtaga
     3541 cgggcgcttc gtgctcaaga tcactgacta cgggctggag agcttcaggg acccggagcc
     3601 cgagcaagga cacaccctct atgccaaaaa gttgtggaca gcccctgagc tcctgcgaat
     3661 ggcctcaccc cctgcccggg gctcccaggc tggtgacgtg tacagctttg ggatcatcct
     3721 tcaggagatt gccctgagga gtggtgtctt ccatgtggaa ggtttggatc tcagtcccaa
     3781 agagatcatc gagcgtgtga ctcggggcga gcagcccccc ttccggccct ccctggccct
     3841 gcagagtcac ctggaggaac tggggcagct gatgcagcgc tgctgggccg aggacccgca
     3901 ggagcggcca cccttccaac agatccgcct gatgctgcgc aaatctaaca gagagaacag
     3961 cagcaacatc ctggataacc tgctgtcgcg catggaacag tacgccaaca acctggaaga
     4021 gctggtggag gagcggaccc aggcctacct ggaggagaag cgcaaggcgg aggccctgct
     4081 ctaccagatt ctgcctcact cagtggctga gcagctgaag cgtggggaga cggtccaggc
     4141 cgaagctttt gacagcgtca ccatctactt cagcgacatt gtgggtttca cagccctgtc
     4201 ggcggagagc acgcccatgc aggtggtgac cctgctcaac gacctgtaca cttgctttga
     4261 tgctgtcata gacaactttg atgtctacaa ggtggagacc attggtgacg cctacatggt
     4321 ggtgtccggg ctcccagtgc ggaacgggag gctgcacgcc cgcgaggtgg cccgcatggc
     4381 cctggcgctg ctggacgcgg tgcgctcctt ccgcatccgc caccggcccc aggagcagct
     4441 gcgcttgcgc atcggcatcc acacaggacc cgtgtgtgca ggtgtggtag ggctgaagat
     4501 gccccgttac tgtctttttg gggacacagt aaacacggcc tcaagaatgg agtctaacgg
     4561 ggaagccctg aagatccact tgtcttctga gaccaaggct gtcctggagg agtttggtgg
     4621 tttcgagctg gagcttcgag gggatgtaga aatgaagggc aaaggcaaag ttcggaccta
     4681 ctggctactg ggggagcggg cgagtagcac ccgaggctga cctggctccc ctcctggcct
     4741 tccacacctc ctttccctgt gccagaggtg acagagaggt gccaggcctc agcctcgcct
     4801 gcagtatccc caccattgcc aaagaagtag tttgaacagc tcagatgtgc agaccccagt
     4861 ggagacacca gacattacct ctgaaagtgg actggtattg ggggagaact tggagctcac
     4921 aggactggac caaaactcac agccatgccc agggacacac acacacacac acacacacac
     4981 acacacacac acacgtaggc acacgcaccc actctccacc ctgactcagg ccaggccagg
     5041 ctgggacatg gattcctgga tcctcctgcc cctccctgtg ctctcttccc tcaaccgtgc
     5101 tacactgtga cttttatggg gaggaggaaa aggcaaaggg attataggtg aatcaagggg
     5161 ctggggggag tccacatctg ggcctagccc agatgggcca caaacaccac cacccccgtc
     5221 ccccaccacc caacctagaa tgcaatgcac aggggagaaa gggaaggaca gagggctgtg
     5281 ggcttgtgtg ccttgcttct cctgtgagtg gagaccatta aaatctttat tccagtga
//
LOCUS       XM_032652215            5251 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus natriuretic peptide receptor 1 (NPR1),
            transcript variant X2, mRNA.
ACCESSION   XM_032652215
VERSION     XM_032652215.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5251
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5251
                     /gene="NPR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763973"
     CDS             1454..4633
                     /gene="NPR1"
                     /codon_start=1
                     /product="atrial natriuretic peptide receptor 1 isoform
                     X1"
                     /protein_id="XP_032508106.1"
                     /db_xref="GeneID:116763973"
                     /translation="MPRPGCPSGARLRLLLLLPLLLLLPGSYAGNLTVAVVLPLANTS
                     YPWSWARVGPAVELALARVKARPDLLPGWTVRTVLGSSESALGVCSDTAAPLAAVDLK
                     WEHNPAVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPAVGFGAKDEYALTTRAGPSHA
                     KLGDFVAALHRRLGWERQALVLYAYQPRDDQPCFFVVEGLYMQVRDRLNITVDHLEFA
                     EGDRDHYTMLLRTVRRKGRVVYICSSPDTFRTLMLLALEAGLSGEDYVFFHLDLFGQS
                     LQGAHGLAPHRPWERGDGQDVSAHQAFQAAKIITYKEPDNPEYLEFLQKLKHLAHEQF
                     NFTMEDGLVNTIPASFHDGLLLYVQAVSETLAHGGTVTDGEGITQRMWNRSFQGVTGY
                     LKMDSNGDRETDFSLWDMDPDTGAFRVVLNFNGTSQELVTVSGCKLNWPLGYPPPDVP
                     KCGFDNEDPACNQDHFSTLEVLALVGSLSLLSILIISFFIYRKMQLEKELASELWRVR
                     WEDLQPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQIFAKTAYYKGNLVAVKRV
                     NRKRIELTREVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQQDILEN
                     ESITLDWMFRYSLTHDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESF
                     RDPEPEQGHTLYAKKLWTAPELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFHVE
                     GLDLSPKEIIERVTRGEQPPFRPSLALQSHLEELGQLMQRCWAEDPQERPPFQQIRLM
                     LRKSNRENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVA
                     EQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFD
                     VYKVETIGDAYMVVSGLPVRNGRLHAREVARMALALLDAVRSFRIRHRPQEQLRLRIG
                     IHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFEL
                     ELRGDVEMKGKGKVRTYWLLGERASSTRG"
     misc_feature    1550..2773
                     /gene="NPR1"
                     /note="Ligand-binding domain of type A natriuretic peptide
                     receptor; Region: PBP1_NPR_A; cd06385"
                     /db_xref="CDD:380608"
     misc_feature    order(1697..1699,1793..1798)
                     /gene="NPR1"
                     /note="Cl binding site [ion binding]; other site"
                     /db_xref="CDD:380608"
     misc_feature    order(1739..1741,1751..1753,1799..1804,1811..1813,
                     1823..1825,1835..1840,2033..2038,2045..2047,2054..2056)
                     /gene="NPR1"
                     /note="dimer interface (closed form) [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380608"
     misc_feature    order(1799..1804,1811..1813,1823..1825,1877..1882,
                     2012..2014,2033..2038,2045..2047,2054..2059,2093..2095)
                     /gene="NPR1"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:380608"
     misc_feature    order(2138..2143,2201..2203,2222..2224)
                     /gene="NPR1"
                     /note="dimer interface (open form) [polypeptide binding];
                     other site"
                     /db_xref="CDD:380608"
     misc_feature    3044..3868
                     /gene="NPR1"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptors, GC-A and GC-B; Region: PK_GC-A_B;
                     cd14042"
                     /db_xref="CDD:270944"
     misc_feature    <3884..4030
                     /gene="NPR1"
                     /note="Heme NO binding associated; Region: HNOBA;
                     pfam07701"
                     /db_xref="CDD:462234"
     misc_feature    3965..4543
                     /gene="NPR1"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     Region: CYCc; smart00044"
                     /db_xref="CDD:214485"
     misc_feature    order(4082..4084,4088..4105,4208..4210,4214..4222,
                     4229..4231,4424..4432,4442..4447,4454..4459,4568..4570)
                     /gene="NPR1"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     misc_feature    order(4088..4090,4220..4222)
                     /gene="NPR1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143636"
     misc_feature    order(4103..4105,4139..4141,4148..4153,4160..4162,
                     4172..4174,4208..4213,4388..4390,4397..4399,4427..4438,
                     4445..4447,4568..4570)
                     /gene="NPR1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143636"
ORIGIN      
        1 tttgtcccaa atagagctcc tcaaatgtat ggaccatata tacatgatat atatgagata
       61 catatatata tacacacaca cacatatata tatagtctta atctttatac cttcagccgg
      121 tgcttaacac gtactaggtc ctctggaaat ctgcagtacg gaagaaattt cctgatcttt
      181 ggtcttgcct aggtacaggc ttgcagaggt tggcagcgca atacggtcaa cgacttctgc
      241 tggccattag agggcagact gattccgcag ctctccggcc cccagcccag ccgtcaaggg
      301 ccccaaaata ctctccccaa tttacccctc cgcttgtcat ttccaacact gtctcccacc
      361 gccccgacaa atcccatttt aataatcctc ctcaagacaa acacacactc acacgccggc
      421 agtgaccctg agatcacacc tgttcgctct tccagccacc cgcaagctct ccctccccgt
      481 tcctacagcc attggggaac taaagagtta actccgccct tctacctggt cctttttctc
      541 cgctaatccg ctcaatctgt aaaccggagg tggggggggg gtagatccta gatggactgg
      601 ttacggggac cctggattca cctactttaa cgccttttcc agaaaccgtc accctcccgc
      661 accaccccga cacacatcca aacacacact ttttcctacc aagatcccaa accagcacct
      721 ctttctctct tccccagacg gaaccagagc cccttctacc cgtgccactc ctcggaggag
      781 gaagaagttt gtccgccgag aagcgcgaag aggctctaaa ggaaagtgcg cgggctgaga
      841 gactcggaag agcccgcgac ttcggggcgg ggacgaagga gttaaagatc caggattggt
      901 tctaaggtca cggagtctgg gaggggaagc ggccgggagg gagggttcgg agcttggctt
      961 gggtcctccc cagcaccccc ccggactgcc ggagacttgg gccggccgga cgccccttct
     1021 ggcacactct ctgggccagg cgctcacgca cacatacaaa cactcacact cccctttccc
     1081 tccctggcgc cctctcccat ccttctccac ggagcgctcg ctcgcgctct cgttttctct
     1141 ctcctaacac acacatacac acacacacac acacacgctc tcgctcacac tcgcgtcctc
     1201 tcggcccccg ctctctcctc gcacccacct gctctgcagc gccctgggcg cacccctcgg
     1261 tcgcgcgccc ctggcgctcc tggcgcagac tgtcacagct agaaggggca gcgtgcctcg
     1321 gggtgagcgc ccccgccccg ctcgtcctcc ctcccacagg ggcgctcctg gtgcccagca
     1381 tgggccgctg agccggaggg gacgccagag gccatggtgg gagcgcttgt ccgcctcggt
     1441 gcccgctgag gccatgccgc gccccggctg cccctccggc gcccgcctgc gcctgcttct
     1501 gctcctgccg ctgctgctgc tgctcccagg cagctacgcg ggcaacctga cggtggccgt
     1561 ggtgctacct ctggccaaca cctcgtaccc gtggtcgtgg gcgcgcgtgg gaccggcggt
     1621 ggagctggcc ctggcccggg tgaaggcgcg gccggacctg ctgccgggct ggacagtccg
     1681 cacggtgctg ggcagcagcg agagcgcgct gggcgtctgc tccgacaccg ccgcgcccct
     1741 ggccgccgtg gacctcaagt gggagcacaa ccccgcggtg ttcctgggcc ccggctgcgt
     1801 gtacgccgcc gcccccgtgg gccgcttcac tgcgcactgg cgggtgccgc tgctgaccgc
     1861 cggcgccccg gctgtggggt tcggggccaa ggacgagtac gcgctgacca cccgcgccgg
     1921 gcccagccat gccaagctgg gcgacttcgt ggcggctctg caccgacggc tgggctggga
     1981 gcgccaggct ctagtgctct acgcctacca gccccgcgac gaccagccct gcttcttcgt
     2041 ggtggagggg ctgtacatgc aggtccgcga ccgcctcaac atcacggtgg accacctgga
     2101 gttcgccgag ggcgaccgcg accactacac catgctgctg cgcaccgtgc gacgcaaagg
     2161 ccgagttgtc tacatctgca gctccccaga caccttcaga accctgatgc ttctggccct
     2221 ggaagctggc ctgagtgggg aggactatgt tttcttccac ctggacctct ttgggcaaag
     2281 cctgcaagga gcacatggcc ttgctcccca caggccctgg gagagaggag atgggcagga
     2341 tgtcagtgcc caccaggcct ttcaggctgc caaaatcatt acatataaag agccggataa
     2401 tcctgagtac ttggaattcc tacagaagct aaaacacttg gcccatgagc agttcaactt
     2461 caccatggag gatggcctgg tgaacaccat cccagcgtcc ttccacgacg ggctcctgct
     2521 ctatgtccag gcagtgtcgg agactctagc acatggggga actgtcaccg atggggaggg
     2581 catcactcag cggatgtgga accgaagctt ccaaggtgtg acaggatacc tgaaaatgga
     2641 cagcaatgga gatcgggaga ctgacttctc cctctgggat atggatcctg acactggcgc
     2701 cttcagggtt gttctgaact tcaatggaac ctcccaagag ctggtgaccg tgtcagggtg
     2761 caaactgaac tggcctctgg ggtatccacc tcctgatgtg cccaaatgtg gttttgacaa
     2821 tgaggaccca gcctgcaacc aagaccactt ttccaccctg gaggtgctgg ctttggtggg
     2881 cagcctctcc ctgctcagca ttctgatcat ctccttcttc atatacagaa agatgcagct
     2941 ggagaaggaa ctggcctcag agctgtggcg ggtgcgttgg gaggacctgc agcccagcag
     3001 cctagagagg cacctccgga gtgcaggcag ccggctgacc ctgagcggga gaggctccaa
     3061 ttacggctcc ctgctgacca cagagggcca gttccaaatc tttgccaaga cagcatatta
     3121 taagggtaac ctcgtggctg tgaaacgtgt gaaccgtaaa cgcattgagc tgacgcggga
     3181 agtcctgttt gagctgaagc atatgcggga tgtgcagaac gaacacctga ccaggtttgt
     3241 gggggcctgc actgaccccc ccaatatctg tatcctcaca gagtactgtc cccgtgggag
     3301 cttgcagcag gatatcctgg agaatgagag catcaccctg gactggatgt tccggtactc
     3361 gctcacccat gacatcgtca agggtatgct gttcctgcac aacggggcca tttgctccca
     3421 tgggaacctc aagtcatcca actgcgtggt agacgggcgc ttcgtgctca agatcactga
     3481 ctacgggctg gagagcttca gggacccgga gcccgagcaa ggacacaccc tctatgccaa
     3541 aaagttgtgg acagcccctg agctcctgcg aatggcctca ccccctgccc ggggctccca
     3601 ggctggtgac gtgtacagct ttgggatcat ccttcaggag attgccctga ggagtggtgt
     3661 cttccatgtg gaaggtttgg atctcagtcc caaagagatc atcgagcgtg tgactcgggg
     3721 cgagcagccc cccttccggc cctccctggc cctgcagagt cacctggagg aactggggca
     3781 gctgatgcag cgctgctggg ccgaggaccc gcaggagcgg ccacccttcc aacagatccg
     3841 cctgatgctg cgcaaatcta acagagagaa cagcagcaac atcctggata acctgctgtc
     3901 gcgcatggaa cagtacgcca acaacctgga agagctggtg gaggagcgga cccaggccta
     3961 cctggaggag aagcgcaagg cggaggccct gctctaccag attctgcctc actcagtggc
     4021 tgagcagctg aagcgtgggg agacggtcca ggccgaagct tttgacagcg tcaccatcta
     4081 cttcagcgac attgtgggtt tcacagccct gtcggcggag agcacgccca tgcaggtggt
     4141 gaccctgctc aacgacctgt acacttgctt tgatgctgtc atagacaact ttgatgtcta
     4201 caaggtggag accattggtg acgcctacat ggtggtgtcc gggctcccag tgcggaacgg
     4261 gaggctgcac gcccgcgagg tggcccgcat ggccctggcg ctgctggacg cggtgcgctc
     4321 cttccgcatc cgccaccggc cccaggagca gctgcgcttg cgcatcggca tccacacagg
     4381 acccgtgtgt gcaggtgtgg tagggctgaa gatgccccgt tactgtcttt ttggggacac
     4441 agtaaacacg gcctcaagaa tggagtctaa cggggaagcc ctgaagatcc acttgtcttc
     4501 tgagaccaag gctgtcctgg aggagtttgg tggtttcgag ctggagcttc gaggggatgt
     4561 agaaatgaag ggcaaaggca aagttcggac ctactggcta ctgggggagc gggcgagtag
     4621 cacccgaggc tgacctggct cccctcctgg ccttccacac ctcctttccc tgtgccagag
     4681 gtgacagaga ggtgccaggc ctcagcctcg cctgcagtat ccccaccatt gccaaagaag
     4741 tagtttgaac agctcagatg tgcagacccc agtggagaca ccagacatta cctctgaaag
     4801 tggactggta ttgggggaga acttggagct cacaggactg gaccaaaact cacagccatg
     4861 cccagggaca cacacacaca cacacacaca cacacacaca cacacacgta ggcacacgca
     4921 cccactctcc accctgactc aggccaggcc aggctgggac atggattcct ggatcctcct
     4981 gcccctccct gtgctctctt ccctcaaccg tgctacactg tgacttttat ggggaggagg
     5041 aaaaggcaaa gggattatag gtgaatcaag gggctggggg gagtccacat ctgggcctag
     5101 cccagatggg ccacaaacac caccaccccc gtcccccacc acccaaccta gaatgcaatg
     5161 cacaggggag aaagggaagg acagagggct gtgggcttgt gtgccttgct tctcctgtga
     5221 gtggagacca ttaaaatctt tattccagtg a
//
LOCUS       XM_032652224            5333 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus natriuretic peptide receptor 1 (NPR1),
            transcript variant X3, mRNA.
ACCESSION   XM_032652224
VERSION     XM_032652224.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5333
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5333
                     /gene="NPR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 20 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763973"
     CDS             1539..4715
                     /gene="NPR1"
                     /codon_start=1
                     /product="atrial natriuretic peptide receptor 1 isoform
                     X2"
                     /protein_id="XP_032508115.1"
                     /db_xref="GeneID:116763973"
                     /translation="MPRPGCPSGARLRLLLLLPLLLLLPGSYAGNLTVAVVLPLANTS
                     YPWSWARVGPAVELALARVKARPDLLPGWTVRTVLGSSESALGVCSDTAAPLAAVDLK
                     WEHNPAVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPAVGFGAKDEYALTTRAGPSHA
                     KLGDFVAALHRRLGWERQALVLYAYQPRDDQPCFFVVEGLYMQVRDRLNITVDHLEFA
                     EGDRDHYTMLLRTVRRKGRVVYICSSPDTFRTLMLLALEAGLSGEDYVFFHLDLFGQS
                     LQGAHGLAPHRPWERGDGQDVSAHQAFQAAKIITYKEPDNPEYLEFLQKLKHLAHEQF
                     NFTMEDGLVNTIPASFHDGLLLYVQAVSETLAHGGTVTDGEGITQRMWNRSFQGVTGY
                     LKMDSNGDRETDFSLWDMDPDTGAFRVVLNFNGTSQELVTVSGCKLNWPLGYPPPDVP
                     KCGFDNEDPACNQDHFSTLEVLALVGSLSLLSILIISFFIYRKMQLEKELASELWRVR
                     WEDLQPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQIFAKTAYYKGNLVAVKRV
                     NRKRIELTREVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQDILENE
                     SITLDWMFRYSLTHDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFR
                     DPEPEQGHTLYAKKLWTAPELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFHVEG
                     LDLSPKEIIERVTRGEQPPFRPSLALQSHLEELGQLMQRCWAEDPQERPPFQQIRLML
                     RKSNRENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAE
                     QLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDV
                     YKVETIGDAYMVVSGLPVRNGRLHAREVARMALALLDAVRSFRIRHRPQEQLRLRIGI
                     HTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFELE
                     LRGDVEMKGKGKVRTYWLLGERASSTRG"
     misc_feature    1635..2858
                     /gene="NPR1"
                     /note="Ligand-binding domain of type A natriuretic peptide
                     receptor; Region: PBP1_NPR_A; cd06385"
                     /db_xref="CDD:380608"
     misc_feature    order(1782..1784,1878..1883)
                     /gene="NPR1"
                     /note="Cl binding site [ion binding]; other site"
                     /db_xref="CDD:380608"
     misc_feature    order(1824..1826,1836..1838,1884..1889,1896..1898,
                     1908..1910,1920..1925,2118..2123,2130..2132,2139..2141)
                     /gene="NPR1"
                     /note="dimer interface (closed form) [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380608"
     misc_feature    order(1884..1889,1896..1898,1908..1910,1962..1967,
                     2097..2099,2118..2123,2130..2132,2139..2144,2178..2180)
                     /gene="NPR1"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:380608"
     misc_feature    order(2223..2228,2286..2288,2307..2309)
                     /gene="NPR1"
                     /note="dimer interface (open form) [polypeptide binding];
                     other site"
                     /db_xref="CDD:380608"
     misc_feature    3129..3950
                     /gene="NPR1"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptors, GC-A and GC-B; Region: PK_GC-A_B;
                     cd14042"
                     /db_xref="CDD:270944"
     misc_feature    <3966..4112
                     /gene="NPR1"
                     /note="Heme NO binding associated; Region: HNOBA;
                     pfam07701"
                     /db_xref="CDD:462234"
     misc_feature    4047..4625
                     /gene="NPR1"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     Region: CYCc; smart00044"
                     /db_xref="CDD:214485"
     misc_feature    order(4164..4166,4170..4187,4290..4292,4296..4304,
                     4311..4313,4506..4514,4524..4529,4536..4541,4650..4652)
                     /gene="NPR1"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     misc_feature    order(4170..4172,4302..4304)
                     /gene="NPR1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143636"
     misc_feature    order(4185..4187,4221..4223,4230..4235,4242..4244,
                     4254..4256,4290..4295,4470..4472,4479..4481,4509..4520,
                     4527..4529,4650..4652)
                     /gene="NPR1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143636"
ORIGIN      
        1 tgtcccaaat agagctcctc aaatgtatgg accatatata catgatatat atgagataca
       61 tatatatata cacacacaca catatatata tagtcttaat ctttatacct tcagccggtg
      121 cttaacacgt actaggtcct ctggaaatct gcagtacgga agaaatttcc tgatctttgg
      181 tcttgcctag gtacaggctt gcagaggttg gcagcgcaat acggtcaacg acttctgctg
      241 gccattagag ggcagactga ttccgcagct ctccggcccc cagcccagcc gtcaagggcc
      301 ccaaaatact ctccccaatt tacccctccg cttgtcattt ccaacactgt ctcccaccgc
      361 cccgacaaat cccattttaa taatcctcct caagacaaac acacactcac acgccggcag
      421 tgaccctgag atcacacctg ttcgctcttc cagccacccg caagctctcc ctccccgttc
      481 ctacagccat tggggaacta aagagttaac tccgcccttc tacctggtcc tttttctccg
      541 ctaatccgct caatctgtaa accggaggtg gggggggggt agatcctaga tggactggtt
      601 acggggaccc tggattcacc tactttaacg ccttttccag aaaccgtcac cctcccgcac
      661 caccccgaca cacatccaaa cacacacttt ttcctaccaa gatcccaaac cagcacctct
      721 ttctctcttc cccagacgga accaggtagg aggggaggga aaggtggggc gcaagaggcc
      781 ctctgttgtt cccacagact tctctattcc gttcttcccg acccggcaac agagcccctt
      841 ctacccgtgc cactcctcgg aggaggaaga agtttgtccg ccgagaagcg cgaagaggct
      901 ctaaaggaaa gtgcgcgggc tgagagactc ggaagagccc gcgacttcgg ggcggggacg
      961 aaggagttaa agatccagga ttggttctaa ggtcacggag tctgggaggg gaagcggccg
     1021 ggagggaggg ttcggagctt ggcttgggtc ctccccagca cccccccgga ctgccggaga
     1081 cttgggccgg ccggacgccc cttctggcac actctctggg ccaggcgctc acgcacacat
     1141 acaaacactc acactcccct ttccctccct ggcgccctct cccatccttc tccacggagc
     1201 gctcgctcgc gctctcgttt tctctctcct aacacacaca tacacacaca cacacacaca
     1261 cgctctcgct cacactcgcg tcctctcggc ccccgctctc tcctcgcacc cacctgctct
     1321 gcagcgccct gggcgcaccc ctcggtcgcg cgcccctggc gctcctggcg cagactgtca
     1381 cagctagaag gggcagcgtg cctcggggtg agcgcccccg ccccgctcgt cctccctccc
     1441 acaggggcgc tcctggtgcc cagcatgggc cgctgagccg gaggggacgc cagaggccat
     1501 ggtgggagcg cttgtccgcc tcggtgcccg ctgaggccat gccgcgcccc ggctgcccct
     1561 ccggcgcccg cctgcgcctg cttctgctcc tgccgctgct gctgctgctc ccaggcagct
     1621 acgcgggcaa cctgacggtg gccgtggtgc tacctctggc caacacctcg tacccgtggt
     1681 cgtgggcgcg cgtgggaccg gcggtggagc tggccctggc ccgggtgaag gcgcggccgg
     1741 acctgctgcc gggctggaca gtccgcacgg tgctgggcag cagcgagagc gcgctgggcg
     1801 tctgctccga caccgccgcg cccctggccg ccgtggacct caagtgggag cacaaccccg
     1861 cggtgttcct gggccccggc tgcgtgtacg ccgccgcccc cgtgggccgc ttcactgcgc
     1921 actggcgggt gccgctgctg accgccggcg ccccggctgt ggggttcggg gccaaggacg
     1981 agtacgcgct gaccacccgc gccgggccca gccatgccaa gctgggcgac ttcgtggcgg
     2041 ctctgcaccg acggctgggc tgggagcgcc aggctctagt gctctacgcc taccagcccc
     2101 gcgacgacca gccctgcttc ttcgtggtgg aggggctgta catgcaggtc cgcgaccgcc
     2161 tcaacatcac ggtggaccac ctggagttcg ccgagggcga ccgcgaccac tacaccatgc
     2221 tgctgcgcac cgtgcgacgc aaaggccgag ttgtctacat ctgcagctcc ccagacacct
     2281 tcagaaccct gatgcttctg gccctggaag ctggcctgag tggggaggac tatgttttct
     2341 tccacctgga cctctttggg caaagcctgc aaggagcaca tggccttgct ccccacaggc
     2401 cctgggagag aggagatggg caggatgtca gtgcccacca ggcctttcag gctgccaaaa
     2461 tcattacata taaagagccg gataatcctg agtacttgga attcctacag aagctaaaac
     2521 acttggccca tgagcagttc aacttcacca tggaggatgg cctggtgaac accatcccag
     2581 cgtccttcca cgacgggctc ctgctctatg tccaggcagt gtcggagact ctagcacatg
     2641 ggggaactgt caccgatggg gagggcatca ctcagcggat gtggaaccga agcttccaag
     2701 gtgtgacagg atacctgaaa atggacagca atggagatcg ggagactgac ttctccctct
     2761 gggatatgga tcctgacact ggcgccttca gggttgttct gaacttcaat ggaacctccc
     2821 aagagctggt gaccgtgtca gggtgcaaac tgaactggcc tctggggtat ccacctcctg
     2881 atgtgcccaa atgtggtttt gacaatgagg acccagcctg caaccaagac cacttttcca
     2941 ccctggaggt gctggctttg gtgggcagcc tctccctgct cagcattctg atcatctcct
     3001 tcttcatata cagaaagatg cagctggaga aggaactggc ctcagagctg tggcgggtgc
     3061 gttgggagga cctgcagccc agcagcctag agaggcacct ccggagtgca ggcagccggc
     3121 tgaccctgag cgggagaggc tccaattacg gctccctgct gaccacagag ggccagttcc
     3181 aaatctttgc caagacagca tattataagg gtaacctcgt ggctgtgaaa cgtgtgaacc
     3241 gtaaacgcat tgagctgacg cgggaagtcc tgtttgagct gaagcatatg cgggatgtgc
     3301 agaacgaaca cctgaccagg tttgtggggg cctgcactga cccccccaat atctgtatcc
     3361 tcacagagta ctgtccccgt gggagcttgc aggatatcct ggagaatgag agcatcaccc
     3421 tggactggat gttccggtac tcgctcaccc atgacatcgt caagggtatg ctgttcctgc
     3481 acaacggggc catttgctcc catgggaacc tcaagtcatc caactgcgtg gtagacgggc
     3541 gcttcgtgct caagatcact gactacgggc tggagagctt cagggacccg gagcccgagc
     3601 aaggacacac cctctatgcc aaaaagttgt ggacagcccc tgagctcctg cgaatggcct
     3661 caccccctgc ccggggctcc caggctggtg acgtgtacag ctttgggatc atccttcagg
     3721 agattgccct gaggagtggt gtcttccatg tggaaggttt ggatctcagt cccaaagaga
     3781 tcatcgagcg tgtgactcgg ggcgagcagc cccccttccg gccctccctg gccctgcaga
     3841 gtcacctgga ggaactgggg cagctgatgc agcgctgctg ggccgaggac ccgcaggagc
     3901 ggccaccctt ccaacagatc cgcctgatgc tgcgcaaatc taacagagag aacagcagca
     3961 acatcctgga taacctgctg tcgcgcatgg aacagtacgc caacaacctg gaagagctgg
     4021 tggaggagcg gacccaggcc tacctggagg agaagcgcaa ggcggaggcc ctgctctacc
     4081 agattctgcc tcactcagtg gctgagcagc tgaagcgtgg ggagacggtc caggccgaag
     4141 cttttgacag cgtcaccatc tacttcagcg acattgtggg tttcacagcc ctgtcggcgg
     4201 agagcacgcc catgcaggtg gtgaccctgc tcaacgacct gtacacttgc tttgatgctg
     4261 tcatagacaa ctttgatgtc tacaaggtgg agaccattgg tgacgcctac atggtggtgt
     4321 ccgggctccc agtgcggaac gggaggctgc acgcccgcga ggtggcccgc atggccctgg
     4381 cgctgctgga cgcggtgcgc tccttccgca tccgccaccg gccccaggag cagctgcgct
     4441 tgcgcatcgg catccacaca ggacccgtgt gtgcaggtgt ggtagggctg aagatgcccc
     4501 gttactgtct ttttggggac acagtaaaca cggcctcaag aatggagtct aacggggaag
     4561 ccctgaagat ccacttgtct tctgagacca aggctgtcct ggaggagttt ggtggtttcg
     4621 agctggagct tcgaggggat gtagaaatga agggcaaagg caaagttcgg acctactggc
     4681 tactggggga gcgggcgagt agcacccgag gctgacctgg ctcccctcct ggccttccac
     4741 acctcctttc cctgtgccag aggtgacaga gaggtgccag gcctcagcct cgcctgcagt
     4801 atccccacca ttgccaaaga agtagtttga acagctcaga tgtgcagacc ccagtggaga
     4861 caccagacat tacctctgaa agtggactgg tattggggga gaacttggag ctcacaggac
     4921 tggaccaaaa ctcacagcca tgcccaggga cacacacaca cacacacaca cacacacaca
     4981 cacacacacg taggcacacg cacccactct ccaccctgac tcaggccagg ccaggctggg
     5041 acatggattc ctggatcctc ctgcccctcc ctgtgctctc ttccctcaac cgtgctacac
     5101 tgtgactttt atggggagga ggaaaaggca aagggattat aggtgaatca aggggctggg
     5161 gggagtccac atctgggcct agcccagatg ggccacaaac accaccaccc ccgtccccca
     5221 ccacccaacc tagaatgcaa tgcacagggg agaaagggaa ggacagaggg ctgtgggctt
     5281 gtgtgccttg cttctcctgt gagtggagac cattaaaatc tttattccag tga
//
LOCUS       XM_032652230            5319 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus natriuretic peptide receptor 1 (NPR1),
            transcript variant X4, mRNA.
ACCESSION   XM_032652230
VERSION     XM_032652230.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5319
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5319
                     /gene="NPR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116763973"
     CDS             1543..4701
                     /gene="NPR1"
                     /codon_start=1
                     /product="atrial natriuretic peptide receptor 1 isoform
                     X3"
                     /protein_id="XP_032508121.1"
                     /db_xref="GeneID:116763973"
                     /translation="MPRPGCPSGARLRLLLLLPLLLLLPGSYAGNLTVAVVLPLANTS
                     YPWSWARVGPAVELALARVKARPDLLPGWTVRTVLGSSESALGVCSDTAAPLAAVDLK
                     WEHNPAVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPAVGFGAKDEYALTTRAGPSHA
                     KLGDFVAALHRRLGWERQALVLYAYQPRDDQPCFFVVEGLYMQVRDRLNITVDHLEFA
                     EGDRDHYTMLLRTVRRKGRVVYICSSPDTFRTLMLLALEAGLSGEDYVFFHLDLFGQS
                     LQGAHGLAPHRPWERGDGQDVSAHQAFQAAKIITYKEPDNPEYLEFLQKLKHLAHEQF
                     NFTMEDGLVNTIPASFHDGLLLYVQAVSETLAHGGTVTDGEGITQRMWNRSFQGVTGY
                     LKMDSNGDRETDFSLWDMDPDTGAFRVVLNFNGTSQELVTVSGCKLNWPLGYPPPDVP
                     KCGFDNEDPACNQDHFSTLEVLALVGSLSLLSILIISFFIYRKMQLEKELASELWRVR
                     WEDLQPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQIFAKTAYYKGNLVAVKRV
                     NRKRIELTREVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQQDILEN
                     ESITLDWMFRYSLTHDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESF
                     RDPEPEQGHTLYAKKLWTAPELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFHVE
                     EIIERVTRGEQPPFRPSLALQSHLEELGQLMQRCWAEDPQERPPFQQIRLMLRKSNRE
                     NSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGE
                     TVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDVYKVETI
                     GDAYMVVSGLPVRNGRLHAREVARMALALLDAVRSFRIRHRPQEQLRLRIGIHTGPVC
                     AGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFELELRGDVE
                     MKGKGKVRTYWLLGERASSTRG"
     misc_feature    1639..2862
                     /gene="NPR1"
                     /note="Ligand-binding domain of type A natriuretic peptide
                     receptor; Region: PBP1_NPR_A; cd06385"
                     /db_xref="CDD:380608"
     misc_feature    order(1786..1788,1882..1887)
                     /gene="NPR1"
                     /note="Cl binding site [ion binding]; other site"
                     /db_xref="CDD:380608"
     misc_feature    order(1828..1830,1840..1842,1888..1893,1900..1902,
                     1912..1914,1924..1929,2122..2127,2134..2136,2143..2145)
                     /gene="NPR1"
                     /note="dimer interface (closed form) [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380608"
     misc_feature    order(1888..1893,1900..1902,1912..1914,1966..1971,
                     2101..2103,2122..2127,2134..2136,2143..2148,2182..2184)
                     /gene="NPR1"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:380608"
     misc_feature    order(2227..2232,2290..2292,2311..2313)
                     /gene="NPR1"
                     /note="dimer interface (open form) [polypeptide binding];
                     other site"
                     /db_xref="CDD:380608"
     misc_feature    3133..3936
                     /gene="NPR1"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptors, GC-A and GC-B; Region: PK_GC-A_B;
                     cd14042"
                     /db_xref="CDD:270944"
     misc_feature    <3952..4098
                     /gene="NPR1"
                     /note="Heme NO binding associated; Region: HNOBA;
                     pfam07701"
                     /db_xref="CDD:462234"
     misc_feature    4033..4611
                     /gene="NPR1"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     Region: CYCc; smart00044"
                     /db_xref="CDD:214485"
     misc_feature    order(4150..4152,4156..4173,4276..4278,4282..4290,
                     4297..4299,4492..4500,4510..4515,4522..4527,4636..4638)
                     /gene="NPR1"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     misc_feature    order(4156..4158,4288..4290)
                     /gene="NPR1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143636"
     misc_feature    order(4171..4173,4207..4209,4216..4221,4228..4230,
                     4240..4242,4276..4281,4456..4458,4465..4467,4495..4506,
                     4513..4515,4636..4638)
                     /gene="NPR1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143636"
ORIGIN      
        1 tatttgtccc aaatagagct cctcaaatgt atggaccata tatacatgat atatatgaga
       61 tacatatata tatacacaca cacacatata tatatagtct taatctttat accttcagcc
      121 ggtgcttaac acgtactagg tcctctggaa atctgcagta cggaagaaat ttcctgatct
      181 ttggtcttgc ctaggtacag gcttgcagag gttggcagcg caatacggtc aacgacttct
      241 gctggccatt agagggcaga ctgattccgc agctctccgg cccccagccc agccgtcaag
      301 ggccccaaaa tactctcccc aatttacccc tccgcttgtc atttccaaca ctgtctccca
      361 ccgccccgac aaatcccatt ttaataatcc tcctcaagac aaacacacac tcacacgccg
      421 gcagtgaccc tgagatcaca cctgttcgct cttccagcca cccgcaagct ctccctcccc
      481 gttcctacag ccattgggga actaaagagt taactccgcc cttctacctg gtcctttttc
      541 tccgctaatc cgctcaatct gtaaaccgga ggtggggggg gggtagatcc tagatggact
      601 ggttacgggg accctggatt cacctacttt aacgcctttt ccagaaaccg tcaccctccc
      661 gcaccacccc gacacacatc caaacacaca ctttttccta ccaagatccc aaaccagcac
      721 ctctttctct cttccccaga cggaaccagg taggagggga gggaaaggtg gggcgcaaga
      781 ggccctctgt tgttcccaca gacttctcta ttccgttctt cccgacccgg caacagagcc
      841 ccttctaccc gtgccactcc tcggaggagg aagaagtttg tccgccgaga agcgcgaaga
      901 ggctctaaag gaaagtgcgc gggctgagag actcggaaga gcccgcgact tcggggcggg
      961 gacgaaggag ttaaagatcc aggattggtt ctaaggtcac ggagtctggg aggggaagcg
     1021 gccgggaggg agggttcgga gcttggcttg ggtcctcccc agcacccccc cggactgccg
     1081 gagacttggg ccggccggac gccccttctg gcacactctc tgggccaggc gctcacgcac
     1141 acatacaaac actcacactc ccctttccct ccctggcgcc ctctcccatc cttctccacg
     1201 gagcgctcgc tcgcgctctc gttttctctc tcctaacaca cacatacaca cacacacaca
     1261 cacacgctct cgctcacact cgcgtcctct cggcccccgc tctctcctcg cacccacctg
     1321 ctctgcagcg ccctgggcgc acccctcggt cgcgcgcccc tggcgctcct ggcgcagact
     1381 gtcacagcta gaaggggcag cgtgcctcgg ggtgagcgcc cccgccccgc tcgtcctccc
     1441 tcccacaggg gcgctcctgg tgcccagcat gggccgctga gccggagggg acgccagagg
     1501 ccatggtggg agcgcttgtc cgcctcggtg cccgctgagg ccatgccgcg ccccggctgc
     1561 ccctccggcg cccgcctgcg cctgcttctg ctcctgccgc tgctgctgct gctcccaggc
     1621 agctacgcgg gcaacctgac ggtggccgtg gtgctacctc tggccaacac ctcgtacccg
     1681 tggtcgtggg cgcgcgtggg accggcggtg gagctggccc tggcccgggt gaaggcgcgg
     1741 ccggacctgc tgccgggctg gacagtccgc acggtgctgg gcagcagcga gagcgcgctg
     1801 ggcgtctgct ccgacaccgc cgcgcccctg gccgccgtgg acctcaagtg ggagcacaac
     1861 cccgcggtgt tcctgggccc cggctgcgtg tacgccgccg cccccgtggg ccgcttcact
     1921 gcgcactggc gggtgccgct gctgaccgcc ggcgccccgg ctgtggggtt cggggccaag
     1981 gacgagtacg cgctgaccac ccgcgccggg cccagccatg ccaagctggg cgacttcgtg
     2041 gcggctctgc accgacggct gggctgggag cgccaggctc tagtgctcta cgcctaccag
     2101 ccccgcgacg accagccctg cttcttcgtg gtggaggggc tgtacatgca ggtccgcgac
     2161 cgcctcaaca tcacggtgga ccacctggag ttcgccgagg gcgaccgcga ccactacacc
     2221 atgctgctgc gcaccgtgcg acgcaaaggc cgagttgtct acatctgcag ctccccagac
     2281 accttcagaa ccctgatgct tctggccctg gaagctggcc tgagtgggga ggactatgtt
     2341 ttcttccacc tggacctctt tgggcaaagc ctgcaaggag cacatggcct tgctccccac
     2401 aggccctggg agagaggaga tgggcaggat gtcagtgccc accaggcctt tcaggctgcc
     2461 aaaatcatta catataaaga gccggataat cctgagtact tggaattcct acagaagcta
     2521 aaacacttgg cccatgagca gttcaacttc accatggagg atggcctggt gaacaccatc
     2581 ccagcgtcct tccacgacgg gctcctgctc tatgtccagg cagtgtcgga gactctagca
     2641 catgggggaa ctgtcaccga tggggagggc atcactcagc ggatgtggaa ccgaagcttc
     2701 caaggtgtga caggatacct gaaaatggac agcaatggag atcgggagac tgacttctcc
     2761 ctctgggata tggatcctga cactggcgcc ttcagggttg ttctgaactt caatggaacc
     2821 tcccaagagc tggtgaccgt gtcagggtgc aaactgaact ggcctctggg gtatccacct
     2881 cctgatgtgc ccaaatgtgg ttttgacaat gaggacccag cctgcaacca agaccacttt
     2941 tccaccctgg aggtgctggc tttggtgggc agcctctccc tgctcagcat tctgatcatc
     3001 tccttcttca tatacagaaa gatgcagctg gagaaggaac tggcctcaga gctgtggcgg
     3061 gtgcgttggg aggacctgca gcccagcagc ctagagaggc acctccggag tgcaggcagc
     3121 cggctgaccc tgagcgggag aggctccaat tacggctccc tgctgaccac agagggccag
     3181 ttccaaatct ttgccaagac agcatattat aagggtaacc tcgtggctgt gaaacgtgtg
     3241 aaccgtaaac gcattgagct gacgcgggaa gtcctgtttg agctgaagca tatgcgggat
     3301 gtgcagaacg aacacctgac caggtttgtg ggggcctgca ctgacccccc caatatctgt
     3361 atcctcacag agtactgtcc ccgtgggagc ttgcagcagg atatcctgga gaatgagagc
     3421 atcaccctgg actggatgtt ccggtactcg ctcacccatg acatcgtcaa gggtatgctg
     3481 ttcctgcaca acggggccat ttgctcccat gggaacctca agtcatccaa ctgcgtggta
     3541 gacgggcgct tcgtgctcaa gatcactgac tacgggctgg agagcttcag ggacccggag
     3601 cccgagcaag gacacaccct ctatgccaaa aagttgtgga cagcccctga gctcctgcga
     3661 atggcctcac cccctgcccg gggctcccag gctggtgacg tgtacagctt tgggatcatc
     3721 cttcaggaga ttgccctgag gagtggtgtc ttccatgtgg aagagatcat cgagcgtgtg
     3781 actcggggcg agcagccccc cttccggccc tccctggccc tgcagagtca cctggaggaa
     3841 ctggggcagc tgatgcagcg ctgctgggcc gaggacccgc aggagcggcc acccttccaa
     3901 cagatccgcc tgatgctgcg caaatctaac agagagaaca gcagcaacat cctggataac
     3961 ctgctgtcgc gcatggaaca gtacgccaac aacctggaag agctggtgga ggagcggacc
     4021 caggcctacc tggaggagaa gcgcaaggcg gaggccctgc tctaccagat tctgcctcac
     4081 tcagtggctg agcagctgaa gcgtggggag acggtccagg ccgaagcttt tgacagcgtc
     4141 accatctact tcagcgacat tgtgggtttc acagccctgt cggcggagag cacgcccatg
     4201 caggtggtga ccctgctcaa cgacctgtac acttgctttg atgctgtcat agacaacttt
     4261 gatgtctaca aggtggagac cattggtgac gcctacatgg tggtgtccgg gctcccagtg
     4321 cggaacggga ggctgcacgc ccgcgaggtg gcccgcatgg ccctggcgct gctggacgcg
     4381 gtgcgctcct tccgcatccg ccaccggccc caggagcagc tgcgcttgcg catcggcatc
     4441 cacacaggac ccgtgtgtgc aggtgtggta gggctgaaga tgccccgtta ctgtcttttt
     4501 ggggacacag taaacacggc ctcaagaatg gagtctaacg gggaagccct gaagatccac
     4561 ttgtcttctg agaccaaggc tgtcctggag gagtttggtg gtttcgagct ggagcttcga
     4621 ggggatgtag aaatgaaggg caaaggcaaa gttcggacct actggctact gggggagcgg
     4681 gcgagtagca cccgaggctg acctggctcc cctcctggcc ttccacacct cctttccctg
     4741 tgccagaggt gacagagagg tgccaggcct cagcctcgcc tgcagtatcc ccaccattgc
     4801 caaagaagta gtttgaacag ctcagatgtg cagaccccag tggagacacc agacattacc
     4861 tctgaaagtg gactggtatt gggggagaac ttggagctca caggactgga ccaaaactca
     4921 cagccatgcc cagggacaca cacacacaca cacacacaca cacacacaca cacacgtagg
     4981 cacacgcacc cactctccac cctgactcag gccaggccag gctgggacat ggattcctgg
     5041 atcctcctgc ccctccctgt gctctcttcc ctcaaccgtg ctacactgtg acttttatgg
     5101 ggaggaggaa aaggcaaagg gattataggt gaatcaaggg gctgggggga gtccacatct
     5161 gggcctagcc cagatgggcc acaaacacca ccacccccgt cccccaccac ccaacctaga
     5221 atgcaatgca caggggagaa agggaaggac agagggctgt gggcttgtgt gccttgcttc
     5281 tcctgtgagt ggagaccatt aaaatcttta ttccagtga
//
LOCUS       XM_032652241            2573 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 2 (MCOLN2), transcript variant
            X1, mRNA.
ACCESSION   XM_032652241
VERSION     XM_032652241.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2573
                     /gene="MCOLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763995"
     CDS             78..1778
                     /gene="MCOLN2"
                     /codon_start=1
                     /product="mucolipin-2 isoform X1"
                     /protein_id="XP_032508132.1"
                     /db_xref="GeneID:116763995"
                     /translation="MARGVEALDLQVWSRASGPSRGPQCRDAMAHLDSEVTEECLRED
                     LKFYFMNPCEKFRARQQIPWKMGLQILKIVMVTTQLVRFGLSNQLVVAFKEENTVAFK
                     HLFLRGYSGVDEDEYSCSVYTQEDTYESIFFAISQFHQLRNLSLGTLGYGENEDNRIG
                     LKVCKQHYKKGTMFPSNETLNIDSDIEIDCIHLDLQTLSKNPQDWKNSSFFRLAFYRL
                     LQVEISFHLKGIDLQTIHSRELPDCYIFQNTIIFDNKAHSGKIKIYFDSDANIEECKD
                     LNISGSIQKNTQYVLVFDAFVIVICLASLILCTRSIVLGLRLRKRFLNFFLEKYKRCV
                     CNADQWEFINRWYILVIISDLMSIIGSILKMEIKAKNLTNYDLCSILLGTSTLFVWVG
                     VIRYLGYFQAYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHDKFENLN
                     TVAECLFSLVNGDDMYATFAHIQQKSLLVWLFSRLYLYSFISLFIYMILSLFIAIITD
                     SYDTIKKYQQNGFPVTDLQEFLKECGSKEKCQKESSAFLSCICCLRRNGSDDHLMLIN
                     "
     misc_feature    408..908
                     /gene="MCOLN2"
                     /note="extracytosolic/lumenal domain (ELD) found in
                     transient receptor potential channel mucolipin 2 (TRPML2);
                     Region: ELD_TRPML2; cd21071"
                     /db_xref="CDD:410967"
     misc_feature    order(423..425,435..437,444..452,456..458,504..527,
                     579..581,597..602,609..611,615..617,759..761,771..776,
                     795..800,840..842,846..860,873..881,897..902)
                     /gene="MCOLN2"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:410967"
     misc_feature    <1215..1616
                     /gene="MCOLN2"
                     /note="Polycystin cation channel; Region: PKD_channel;
                     pfam08016"
                     /db_xref="CDD:462341"
ORIGIN      
        1 tgaaggcgct tctacccggc cctacagctc ggccgccacc caggaggtct ccttcccccg
       61 tcgctccggg cagcaccatg gctcgtggcg tggaggcgct ggacctgcag gtgtggagca
      121 gagcctcagg tccgtcccgg gggcctcagt gcagagatgc aatggctcat cttgattctg
      181 aggtgacaga agaatgtctg agagaagacc tgaagtttta cttcatgaac ccttgtgaaa
      241 aattccgagc cagacaacag attccgtgga aaatgggttt gcagattttg aagatagtca
      301 tggtcaccac acagcttgtt cgttttggtt taagtaacca gctggtggtg gctttcaaag
      361 aagaaaacac tgttgctttt aagcacttgt ttttgagagg atattccggt gtagatgaag
      421 atgaatacag ctgcagtgta tatactcaag aggacaccta tgagagcatc ttttttgcta
      481 ttagtcagtt tcatcagcta aggaatttat ctctggggac ccttggttat ggagaaaatg
      541 aagacaacag aattggatta aaagtctgta agcagcatta caagaaaggg accatgtttc
      601 cttctaatga gacgctaaat attgacagcg acattgaaat agactgcatt cacctagacc
      661 tccagaccct ctccaagaac cctcaggact ggaagaactc atcattcttc agactggcat
      721 tttatcgcct cttgcaagtt gaaatctcct ttcatctcaa aggcattgac ctgcagacga
      781 ttcattcccg agagctacca gactgttaca tctttcagaa tacgattatc tttgacaata
      841 aagctcacag tggcaaaatc aaaatctact ttgacagtga cgctaacatc gaggaatgta
      901 aagacttgaa catctccgga tctattcaga aaaatactca gtatgtcctg gtgtttgatg
      961 catttgtcat tgtgatttgc ttggcatctc ttattctgtg cacaagatcc attgttctgg
     1021 gtctaaggtt acgaaagaga ttcttaaatt tcttcctgga gaagtacaag cgatgtgtgt
     1081 gtaatgccga ccaatgggag ttcatcaaca gatggtatat cctggtgatt atcagcgacc
     1141 taatgtcaat aattggatcc atattaaaaa tggaaattaa agccaagaac ctcacaaatt
     1201 atgatctgtg cagcattttg cttggaacat ctacgctctt tgtctgggtt ggcgtcatca
     1261 gatacttggg ttacttccaa gcatataatg tgctcatttt aacaatgcaa gcctcactgc
     1321 caaaagttct tcgcttctgc gcgtgtgccg gtatgatcta tctgggttac accttctgcg
     1381 gctggattgt tttaggacca tatcacgaca agtttgaaaa tctgaacaca gttgctgagt
     1441 gtttgttttc tctggtcaac ggtgatgaca tgtatgcgac ctttgctcac atccagcaga
     1501 agagcctctt ggtgtggctg ttcagtcgcc tgtatttata ttccttcatc agtcttttca
     1561 tatatatgat tctcagcctt ttcattgcaa ttattacaga ttcttatgac accattaaga
     1621 aataccaaca gaatgggttt cctgtcacgg atcttcagga attcctgaag gagtgtggta
     1681 gcaaagagaa gtgtcagaaa gagtcatcag ccttcctgtc ctgcatctgc tgtctgagga
     1741 ggaatggaag cgatgaccac ttgatgctta ttaactaaaa ttctcctgct gaagataatc
     1801 gagttcaggt ctccgtatca agtgacaatg aagagggacc ccaaatggct tggaccagca
     1861 cttccaaaaa tactgattgc ggagtgggaa agaggactgg ctctgagctg tctgaataga
     1921 actgaagttt caaacttcct ttttataaac taggatgatg aagaatagac cacagtcaac
     1981 tactgggcat tggtgtaata gagcagtgcc ggtgaaattc tgtattagtc ttttaattta
     2041 tgacatcaca atgttgggat ggaaaaaaat cacatttcag agcgtgcaaa acaacggtat
     2101 ttaaagccat gcatttgaag atatgagttt atcatcaaat acgggtttgt cttaaaagtg
     2161 attcttgggt tagaagacat ttgttaattc atggtctgca caaaactgaa attggttgca
     2221 gtaacgattt aggcactcaa agctggagaa ctgttaagcc ttgtaaagat tacacttaaa
     2281 tcaacaaaaa gacctcttgc ggtggacatt tcttggctta ttttcctgtg gtcttctcag
     2341 catgatatga aactatcggc aaagtcagtg ggataaactg gaaacagtca tttggacacc
     2401 ttgttacaac ttgtgctaat tgttgattgt acacacatga catgtggaca ttatactaca
     2461 gcagtggtca ctcattttaa caaccaaact ccaccgtggt ggggatttac ccttgtcaag
     2521 caaggaagat ggtatttttt cccaaataaa ttaaattaac ttttatcata aca
//
LOCUS       XM_032652243            2550 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 2 (MCOLN2), transcript variant
            X2, mRNA.
ACCESSION   XM_032652243
VERSION     XM_032652243.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2550
                     /gene="MCOLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 20
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116763995"
     CDS             143..1759
                     /gene="MCOLN2"
                     /codon_start=1
                     /product="mucolipin-2 isoform X2"
                     /protein_id="XP_032508134.1"
                     /db_xref="GeneID:116763995"
                     /translation="MAHLDSEVTEECLREDLKFYFMNPCEKFRARQQIPWKMGLQILK
                     IVMVTTQLVRFGLSNQLVVAFKEENTVAFKHLFLRGYSGVDEDEYSCSVYTQEDTYES
                     IFFAISQFHQLRNLSLGTLGYGENEDNRIGLKVCKQHYKKGTMFPSNETLNIDSDIEI
                     DCIHLDLQTLSKNPQDWKNSSFFRLAFYRLLQVEISFHLKGIDLQTIHSRELPDCYIF
                     QNTIIFDNKAHSGKIKIYFDSDANIEECKDLNISGSIQKNTQYVLVFDAFVIVICLAS
                     LILCTRSIVLGLRLRKRFLNFFLEKYKRCVCNADQWEFINRWYILVIISDLMSIIGSI
                     LKMEIKAKNLTNYDLCSILLGTSTLFVWVGVIRYLGYFQAYNVLILTMQASLPKVLRF
                     CACAGMIYLGYTFCGWIVLGPYHDKFENLNTVAECLFSLVNGDDMYATFAHIQQKSLL
                     VWLFSRLYLYSFISLFIYMILSLFIAIITDSYDTIKKYQQNGFPVTDLQEFLKECGSK
                     EKCQKESSAFLSCICCLRRNGSDDHLMLIN"
     misc_feature    389..889
                     /gene="MCOLN2"
                     /note="extracytosolic/lumenal domain (ELD) found in
                     transient receptor potential channel mucolipin 2 (TRPML2);
                     Region: ELD_TRPML2; cd21071"
                     /db_xref="CDD:410967"
     misc_feature    order(404..406,416..418,425..433,437..439,485..508,
                     560..562,578..583,590..592,596..598,740..742,752..757,
                     776..781,821..823,827..841,854..862,878..883)
                     /gene="MCOLN2"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:410967"
     misc_feature    <1196..1597
                     /gene="MCOLN2"
                     /note="Polycystin cation channel; Region: PKD_channel;
                     pfam08016"
                     /db_xref="CDD:462341"
ORIGIN      
        1 ccttcctcgc cggcgcgcaa cgacccgccc ggcagcccgc cgccgccgcc gcccgagggg
       61 ggccagccgc ccccgcgact cgccgcgcct gccagagggc cggggtctgc gcgcccctgg
      121 cggctggtag gaaggagatg caatggctca tcttgattct gaggtgacag aagaatgtct
      181 gagagaagac ctgaagtttt acttcatgaa cccttgtgaa aaattccgag ccagacaaca
      241 gattccgtgg aaaatgggtt tgcagatttt gaagatagtc atggtcacca cacagcttgt
      301 tcgttttggt ttaagtaacc agctggtggt ggctttcaaa gaagaaaaca ctgttgcttt
      361 taagcacttg tttttgagag gatattccgg tgtagatgaa gatgaataca gctgcagtgt
      421 atatactcaa gaggacacct atgagagcat cttttttgct attagtcagt ttcatcagct
      481 aaggaattta tctctgggga cccttggtta tggagaaaat gaagacaaca gaattggatt
      541 aaaagtctgt aagcagcatt acaagaaagg gaccatgttt ccttctaatg agacgctaaa
      601 tattgacagc gacattgaaa tagactgcat tcacctagac ctccagaccc tctccaagaa
      661 ccctcaggac tggaagaact catcattctt cagactggca ttttatcgcc tcttgcaagt
      721 tgaaatctcc tttcatctca aaggcattga cctgcagacg attcattccc gagagctacc
      781 agactgttac atctttcaga atacgattat ctttgacaat aaagctcaca gtggcaaaat
      841 caaaatctac tttgacagtg acgctaacat cgaggaatgt aaagacttga acatctccgg
      901 atctattcag aaaaatactc agtatgtcct ggtgtttgat gcatttgtca ttgtgatttg
      961 cttggcatct cttattctgt gcacaagatc cattgttctg ggtctaaggt tacgaaagag
     1021 attcttaaat ttcttcctgg agaagtacaa gcgatgtgtg tgtaatgccg accaatggga
     1081 gttcatcaac agatggtata tcctggtgat tatcagcgac ctaatgtcaa taattggatc
     1141 catattaaaa atggaaatta aagccaagaa cctcacaaat tatgatctgt gcagcatttt
     1201 gcttggaaca tctacgctct ttgtctgggt tggcgtcatc agatacttgg gttacttcca
     1261 agcatataat gtgctcattt taacaatgca agcctcactg ccaaaagttc ttcgcttctg
     1321 cgcgtgtgcc ggtatgatct atctgggtta caccttctgc ggctggattg ttttaggacc
     1381 atatcacgac aagtttgaaa atctgaacac agttgctgag tgtttgtttt ctctggtcaa
     1441 cggtgatgac atgtatgcga cctttgctca catccagcag aagagcctct tggtgtggct
     1501 gttcagtcgc ctgtatttat attccttcat cagtcttttc atatatatga ttctcagcct
     1561 tttcattgca attattacag attcttatga caccattaag aaataccaac agaatgggtt
     1621 tcctgtcacg gatcttcagg aattcctgaa ggagtgtggt agcaaagaga agtgtcagaa
     1681 agagtcatca gccttcctgt cctgcatctg ctgtctgagg aggaatggaa gcgatgacca
     1741 cttgatgctt attaactaaa attctcctgc tgaagataat cgagttcagg tctccgtatc
     1801 aagtgacaat gaagagggac cccaaatggc ttggaccagc acttccaaaa atactgattg
     1861 cggagtggga aagaggactg gctctgagct gtctgaatag aactgaagtt tcaaacttcc
     1921 tttttataaa ctaggatgat gaagaataga ccacagtcaa ctactgggca ttggtgtaat
     1981 agagcagtgc cggtgaaatt ctgtattagt cttttaattt atgacatcac aatgttggga
     2041 tggaaaaaaa tcacatttca gagcgtgcaa aacaacggta tttaaagcca tgcatttgaa
     2101 gatatgagtt tatcatcaaa tacgggtttg tcttaaaagt gattcttggg ttagaagaca
     2161 tttgttaatt catggtctgc acaaaactga aattggttgc agtaacgatt taggcactca
     2221 aagctggaga actgttaagc cttgtaaaga ttacacttaa atcaacaaaa agacctcttg
     2281 cggtggacat ttcttggctt attttcctgt ggtcttctca gcatgatatg aaactatcgg
     2341 caaagtcagt gggataaact ggaaacagtc atttggacac cttgttacaa cttgtgctaa
     2401 ttgttgattg tacacacatg acatgtggac attatactac agcagtggtc actcatttta
     2461 acaaccaaac tccaccgtgg tggggattta cccttgtcaa gcaaggaaga tggtattttt
     2521 tcccaaataa attaaattaa cttttatcat
//
LOCUS       XM_032652245            2609 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 2 (MCOLN2), transcript variant
            X3, mRNA.
ACCESSION   XM_032652245
VERSION     XM_032652245.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2609
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2609
                     /gene="MCOLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 20
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116763995"
     CDS             202..1818
                     /gene="MCOLN2"
                     /codon_start=1
                     /product="mucolipin-2 isoform X2"
                     /protein_id="XP_032508136.1"
                     /db_xref="GeneID:116763995"
                     /translation="MAHLDSEVTEECLREDLKFYFMNPCEKFRARQQIPWKMGLQILK
                     IVMVTTQLVRFGLSNQLVVAFKEENTVAFKHLFLRGYSGVDEDEYSCSVYTQEDTYES
                     IFFAISQFHQLRNLSLGTLGYGENEDNRIGLKVCKQHYKKGTMFPSNETLNIDSDIEI
                     DCIHLDLQTLSKNPQDWKNSSFFRLAFYRLLQVEISFHLKGIDLQTIHSRELPDCYIF
                     QNTIIFDNKAHSGKIKIYFDSDANIEECKDLNISGSIQKNTQYVLVFDAFVIVICLAS
                     LILCTRSIVLGLRLRKRFLNFFLEKYKRCVCNADQWEFINRWYILVIISDLMSIIGSI
                     LKMEIKAKNLTNYDLCSILLGTSTLFVWVGVIRYLGYFQAYNVLILTMQASLPKVLRF
                     CACAGMIYLGYTFCGWIVLGPYHDKFENLNTVAECLFSLVNGDDMYATFAHIQQKSLL
                     VWLFSRLYLYSFISLFIYMILSLFIAIITDSYDTIKKYQQNGFPVTDLQEFLKECGSK
                     EKCQKESSAFLSCICCLRRNGSDDHLMLIN"
     misc_feature    448..948
                     /gene="MCOLN2"
                     /note="extracytosolic/lumenal domain (ELD) found in
                     transient receptor potential channel mucolipin 2 (TRPML2);
                     Region: ELD_TRPML2; cd21071"
                     /db_xref="CDD:410967"
     misc_feature    order(463..465,475..477,484..492,496..498,544..567,
                     619..621,637..642,649..651,655..657,799..801,811..816,
                     835..840,880..882,886..900,913..921,937..942)
                     /gene="MCOLN2"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:410967"
     misc_feature    <1255..1656
                     /gene="MCOLN2"
                     /note="Polycystin cation channel; Region: PKD_channel;
                     pfam08016"
                     /db_xref="CDD:462341"
ORIGIN      
        1 ccgcctagga gggatccgac ttcaggggag gcgttcccgg caaggctgaa acgcgtgcag
       61 tgaacggttt ctcctgctcc gaatcccgag agtcgtggaa agttttgaag gcgcaggcct
      121 ggcccggtag ccccgtcctt ttccccaggc caggaagcag aggaaagacc aagtgatttc
      181 aggttaactg tcagagatgc aatggctcat cttgattctg aggtgacaga agaatgtctg
      241 agagaagacc tgaagtttta cttcatgaac ccttgtgaaa aattccgagc cagacaacag
      301 attccgtgga aaatgggttt gcagattttg aagatagtca tggtcaccac acagcttgtt
      361 cgttttggtt taagtaacca gctggtggtg gctttcaaag aagaaaacac tgttgctttt
      421 aagcacttgt ttttgagagg atattccggt gtagatgaag atgaatacag ctgcagtgta
      481 tatactcaag aggacaccta tgagagcatc ttttttgcta ttagtcagtt tcatcagcta
      541 aggaatttat ctctggggac ccttggttat ggagaaaatg aagacaacag aattggatta
      601 aaagtctgta agcagcatta caagaaaggg accatgtttc cttctaatga gacgctaaat
      661 attgacagcg acattgaaat agactgcatt cacctagacc tccagaccct ctccaagaac
      721 cctcaggact ggaagaactc atcattcttc agactggcat tttatcgcct cttgcaagtt
      781 gaaatctcct ttcatctcaa aggcattgac ctgcagacga ttcattcccg agagctacca
      841 gactgttaca tctttcagaa tacgattatc tttgacaata aagctcacag tggcaaaatc
      901 aaaatctact ttgacagtga cgctaacatc gaggaatgta aagacttgaa catctccgga
      961 tctattcaga aaaatactca gtatgtcctg gtgtttgatg catttgtcat tgtgatttgc
     1021 ttggcatctc ttattctgtg cacaagatcc attgttctgg gtctaaggtt acgaaagaga
     1081 ttcttaaatt tcttcctgga gaagtacaag cgatgtgtgt gtaatgccga ccaatgggag
     1141 ttcatcaaca gatggtatat cctggtgatt atcagcgacc taatgtcaat aattggatcc
     1201 atattaaaaa tggaaattaa agccaagaac ctcacaaatt atgatctgtg cagcattttg
     1261 cttggaacat ctacgctctt tgtctgggtt ggcgtcatca gatacttggg ttacttccaa
     1321 gcatataatg tgctcatttt aacaatgcaa gcctcactgc caaaagttct tcgcttctgc
     1381 gcgtgtgccg gtatgatcta tctgggttac accttctgcg gctggattgt tttaggacca
     1441 tatcacgaca agtttgaaaa tctgaacaca gttgctgagt gtttgttttc tctggtcaac
     1501 ggtgatgaca tgtatgcgac ctttgctcac atccagcaga agagcctctt ggtgtggctg
     1561 ttcagtcgcc tgtatttata ttccttcatc agtcttttca tatatatgat tctcagcctt
     1621 ttcattgcaa ttattacaga ttcttatgac accattaaga aataccaaca gaatgggttt
     1681 cctgtcacgg atcttcagga attcctgaag gagtgtggta gcaaagagaa gtgtcagaaa
     1741 gagtcatcag ccttcctgtc ctgcatctgc tgtctgagga ggaatggaag cgatgaccac
     1801 ttgatgctta ttaactaaaa ttctcctgct gaagataatc gagttcaggt ctccgtatca
     1861 agtgacaatg aagagggacc ccaaatggct tggaccagca cttccaaaaa tactgattgc
     1921 ggagtgggaa agaggactgg ctctgagctg tctgaataga actgaagttt caaacttcct
     1981 ttttataaac taggatgatg aagaatagac cacagtcaac tactgggcat tggtgtaata
     2041 gagcagtgcc ggtgaaattc tgtattagtc ttttaattta tgacatcaca atgttgggat
     2101 ggaaaaaaat cacatttcag agcgtgcaaa acaacggtat ttaaagccat gcatttgaag
     2161 atatgagttt atcatcaaat acgggtttgt cttaaaagtg attcttgggt tagaagacat
     2221 ttgttaattc atggtctgca caaaactgaa attggttgca gtaacgattt aggcactcaa
     2281 agctggagaa ctgttaagcc ttgtaaagat tacacttaaa tcaacaaaaa gacctcttgc
     2341 ggtggacatt tcttggctta ttttcctgtg gtcttctcag catgatatga aactatcggc
     2401 aaagtcagtg ggataaactg gaaacagtca tttggacacc ttgttacaac ttgtgctaat
     2461 tgttgattgt acacacatga catgtggaca ttatactaca gcagtggtca ctcattttaa
     2521 caaccaaact ccaccgtggt ggggatttac ccttgtcaag caaggaagat ggtatttttt
     2581 cccaaataaa ttaaattaac ttttatcat
//
LOCUS       XM_032652247            2676 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 2 (MCOLN2), transcript variant
            X4, mRNA.
ACCESSION   XM_032652247
VERSION     XM_032652247.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2676
                     /gene="MCOLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 20
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116763995"
     CDS             269..1885
                     /gene="MCOLN2"
                     /codon_start=1
                     /product="mucolipin-2 isoform X2"
                     /protein_id="XP_032508138.1"
                     /db_xref="GeneID:116763995"
                     /translation="MAHLDSEVTEECLREDLKFYFMNPCEKFRARQQIPWKMGLQILK
                     IVMVTTQLVRFGLSNQLVVAFKEENTVAFKHLFLRGYSGVDEDEYSCSVYTQEDTYES
                     IFFAISQFHQLRNLSLGTLGYGENEDNRIGLKVCKQHYKKGTMFPSNETLNIDSDIEI
                     DCIHLDLQTLSKNPQDWKNSSFFRLAFYRLLQVEISFHLKGIDLQTIHSRELPDCYIF
                     QNTIIFDNKAHSGKIKIYFDSDANIEECKDLNISGSIQKNTQYVLVFDAFVIVICLAS
                     LILCTRSIVLGLRLRKRFLNFFLEKYKRCVCNADQWEFINRWYILVIISDLMSIIGSI
                     LKMEIKAKNLTNYDLCSILLGTSTLFVWVGVIRYLGYFQAYNVLILTMQASLPKVLRF
                     CACAGMIYLGYTFCGWIVLGPYHDKFENLNTVAECLFSLVNGDDMYATFAHIQQKSLL
                     VWLFSRLYLYSFISLFIYMILSLFIAIITDSYDTIKKYQQNGFPVTDLQEFLKECGSK
                     EKCQKESSAFLSCICCLRRNGSDDHLMLIN"
     misc_feature    515..1015
                     /gene="MCOLN2"
                     /note="extracytosolic/lumenal domain (ELD) found in
                     transient receptor potential channel mucolipin 2 (TRPML2);
                     Region: ELD_TRPML2; cd21071"
                     /db_xref="CDD:410967"
     misc_feature    order(530..532,542..544,551..559,563..565,611..634,
                     686..688,704..709,716..718,722..724,866..868,878..883,
                     902..907,947..949,953..967,980..988,1004..1009)
                     /gene="MCOLN2"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:410967"
     misc_feature    <1322..1723
                     /gene="MCOLN2"
                     /note="Polycystin cation channel; Region: PKD_channel;
                     pfam08016"
                     /db_xref="CDD:462341"
ORIGIN      
        1 gtcatgtggg tggcgtttca aagaggaggt cggataaggg agtctgttca agagagagat
       61 ttgccagagg tgcaaatgtg aaagtccaca tcctgtggat agtatttaaa gacacagaac
      121 tccatgaact cttctagaag ggaggataga ggatagaagt gccctggaca gtcctgaggc
      181 actctggcat ctggaagtca gatggaaaag gagccagtaa aggagagcca gagaagccca
      241 gtgaggcagg aagcaaacta gagatgcaat ggctcatctt gattctgagg tgacagaaga
      301 atgtctgaga gaagacctga agttttactt catgaaccct tgtgaaaaat tccgagccag
      361 acaacagatt ccgtggaaaa tgggtttgca gattttgaag atagtcatgg tcaccacaca
      421 gcttgttcgt tttggtttaa gtaaccagct ggtggtggct ttcaaagaag aaaacactgt
      481 tgcttttaag cacttgtttt tgagaggata ttccggtgta gatgaagatg aatacagctg
      541 cagtgtatat actcaagagg acacctatga gagcatcttt tttgctatta gtcagtttca
      601 tcagctaagg aatttatctc tggggaccct tggttatgga gaaaatgaag acaacagaat
      661 tggattaaaa gtctgtaagc agcattacaa gaaagggacc atgtttcctt ctaatgagac
      721 gctaaatatt gacagcgaca ttgaaataga ctgcattcac ctagacctcc agaccctctc
      781 caagaaccct caggactgga agaactcatc attcttcaga ctggcatttt atcgcctctt
      841 gcaagttgaa atctcctttc atctcaaagg cattgacctg cagacgattc attcccgaga
      901 gctaccagac tgttacatct ttcagaatac gattatcttt gacaataaag ctcacagtgg
      961 caaaatcaaa atctactttg acagtgacgc taacatcgag gaatgtaaag acttgaacat
     1021 ctccggatct attcagaaaa atactcagta tgtcctggtg tttgatgcat ttgtcattgt
     1081 gatttgcttg gcatctctta ttctgtgcac aagatccatt gttctgggtc taaggttacg
     1141 aaagagattc ttaaatttct tcctggagaa gtacaagcga tgtgtgtgta atgccgacca
     1201 atgggagttc atcaacagat ggtatatcct ggtgattatc agcgacctaa tgtcaataat
     1261 tggatccata ttaaaaatgg aaattaaagc caagaacctc acaaattatg atctgtgcag
     1321 cattttgctt ggaacatcta cgctctttgt ctgggttggc gtcatcagat acttgggtta
     1381 cttccaagca tataatgtgc tcattttaac aatgcaagcc tcactgccaa aagttcttcg
     1441 cttctgcgcg tgtgccggta tgatctatct gggttacacc ttctgcggct ggattgtttt
     1501 aggaccatat cacgacaagt ttgaaaatct gaacacagtt gctgagtgtt tgttttctct
     1561 ggtcaacggt gatgacatgt atgcgacctt tgctcacatc cagcagaaga gcctcttggt
     1621 gtggctgttc agtcgcctgt atttatattc cttcatcagt cttttcatat atatgattct
     1681 cagccttttc attgcaatta ttacagattc ttatgacacc attaagaaat accaacagaa
     1741 tgggtttcct gtcacggatc ttcaggaatt cctgaaggag tgtggtagca aagagaagtg
     1801 tcagaaagag tcatcagcct tcctgtcctg catctgctgt ctgaggagga atggaagcga
     1861 tgaccacttg atgcttatta actaaaattc tcctgctgaa gataatcgag ttcaggtctc
     1921 cgtatcaagt gacaatgaag agggacccca aatggcttgg accagcactt ccaaaaatac
     1981 tgattgcgga gtgggaaaga ggactggctc tgagctgtct gaatagaact gaagtttcaa
     2041 acttcctttt tataaactag gatgatgaag aatagaccac agtcaactac tgggcattgg
     2101 tgtaatagag cagtgccggt gaaattctgt attagtcttt taatttatga catcacaatg
     2161 ttgggatgga aaaaaatcac atttcagagc gtgcaaaaca acggtattta aagccatgca
     2221 tttgaagata tgagtttatc atcaaatacg ggtttgtctt aaaagtgatt cttgggttag
     2281 aagacatttg ttaattcatg gtctgcacaa aactgaaatt ggttgcagta acgatttagg
     2341 cactcaaagc tggagaactg ttaagccttg taaagattac acttaaatca acaaaaagac
     2401 ctcttgcggt ggacatttct tggcttattt tcctgtggtc ttctcagcat gatatgaaac
     2461 tatcggcaaa gtcagtggga taaactggaa acagtcattt ggacaccttg ttacaacttg
     2521 tgctaattgt tgattgtaca cacatgacat gtggacatta tactacagca gtggtcactc
     2581 attttaacaa ccaaactcca ccgtggtggg gatttaccct tgtcaagcaa ggaagatggt
     2641 attttttccc aaataaatta aattaacttt tatcat
//
LOCUS       XM_032652250            2362 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 2 (MCOLN2), transcript variant
            X5, mRNA.
ACCESSION   XM_032652250
VERSION     XM_032652250.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2362
                     /gene="MCOLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763995"
     CDS             74..1567
                     /gene="MCOLN2"
                     /codon_start=1
                     /product="mucolipin-2 isoform X3"
                     /protein_id="XP_032508141.1"
                     /db_xref="GeneID:116763995"
                     /translation="MARGVEALDLQVWSRASGPSRGPQCRDAMAHLDSEVTEECLRED
                     LKFYFMNPCEKFRARQQIPWKMGLQILKIVMVTTQLVRFGLSNQLVVAFKEENTVAFK
                     HLFLRGYSGVDEDEYSCSVYTQEDTYESIFFAISQFHQLRNLSLGTLGYGENEDNRIG
                     LKVCKQHYKKGTMFPSNETLNIDSDIEIDCIHLDLQTLSKNPQDWKNSSFFRLAFYRL
                     LQVEISFHLKGIDLQTIHSRELPDCYIFQNTIIFDNKAHSGKIKIYFDSDANIEECKD
                     LNISGSIQKNTQYVLVFDAFVIVICLASLILCTRSIVLGLRLRKRFLNFFLEKYKRCV
                     CNADQWEFINRWYILVIISDLMSIIGSILKMEIKAKNLTNYDLCSILLGTSTLFVWVG
                     VIRYLGYFQAYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHDKKYQQN
                     GFPVTDLQEFLKECGSKEKCQKESSAFLSCICCLRRNGSDDHLMLIN"
     misc_feature    404..904
                     /gene="MCOLN2"
                     /note="extracytosolic/lumenal domain (ELD) found in
                     transient receptor potential channel mucolipin 2 (TRPML2);
                     Region: ELD_TRPML2; cd21071"
                     /db_xref="CDD:410967"
     misc_feature    order(419..421,431..433,440..448,452..454,500..523,
                     575..577,593..598,605..607,611..613,755..757,767..772,
                     791..796,836..838,842..856,869..877,893..898)
                     /gene="MCOLN2"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:410967"
ORIGIN      
        1 ggcgcttcta cccggcccta cagctcggcc gccacccagg aggtctcctt cccccgtcgc
       61 tccgggcagc accatggctc gtggcgtgga ggcgctggac ctgcaggtgt ggagcagagc
      121 ctcaggtccg tcccgggggc ctcagtgcag agatgcaatg gctcatcttg attctgaggt
      181 gacagaagaa tgtctgagag aagacctgaa gttttacttc atgaaccctt gtgaaaaatt
      241 ccgagccaga caacagattc cgtggaaaat gggtttgcag attttgaaga tagtcatggt
      301 caccacacag cttgttcgtt ttggtttaag taaccagctg gtggtggctt tcaaagaaga
      361 aaacactgtt gcttttaagc acttgttttt gagaggatat tccggtgtag atgaagatga
      421 atacagctgc agtgtatata ctcaagagga cacctatgag agcatctttt ttgctattag
      481 tcagtttcat cagctaagga atttatctct ggggaccctt ggttatggag aaaatgaaga
      541 caacagaatt ggattaaaag tctgtaagca gcattacaag aaagggacca tgtttccttc
      601 taatgagacg ctaaatattg acagcgacat tgaaatagac tgcattcacc tagacctcca
      661 gaccctctcc aagaaccctc aggactggaa gaactcatca ttcttcagac tggcatttta
      721 tcgcctcttg caagttgaaa tctcctttca tctcaaaggc attgacctgc agacgattca
      781 ttcccgagag ctaccagact gttacatctt tcagaatacg attatctttg acaataaagc
      841 tcacagtggc aaaatcaaaa tctactttga cagtgacgct aacatcgagg aatgtaaaga
      901 cttgaacatc tccggatcta ttcagaaaaa tactcagtat gtcctggtgt ttgatgcatt
      961 tgtcattgtg atttgcttgg catctcttat tctgtgcaca agatccattg ttctgggtct
     1021 aaggttacga aagagattct taaatttctt cctggagaag tacaagcgat gtgtgtgtaa
     1081 tgccgaccaa tgggagttca tcaacagatg gtatatcctg gtgattatca gcgacctaat
     1141 gtcaataatt ggatccatat taaaaatgga aattaaagcc aagaacctca caaattatga
     1201 tctgtgcagc attttgcttg gaacatctac gctctttgtc tgggttggcg tcatcagata
     1261 cttgggttac ttccaagcat ataatgtgct cattttaaca atgcaagcct cactgccaaa
     1321 agttcttcgc ttctgcgcgt gtgccggtat gatctatctg ggttacacct tctgcggctg
     1381 gattgtttta ggaccatatc acgacaagaa ataccaacag aatgggtttc ctgtcacgga
     1441 tcttcaggaa ttcctgaagg agtgtggtag caaagagaag tgtcagaaag agtcatcagc
     1501 cttcctgtcc tgcatctgct gtctgaggag gaatggaagc gatgaccact tgatgcttat
     1561 taactaaaat tctcctgctg aagataatcg agttcaggtc tccgtatcaa gtgacaatga
     1621 agagggaccc caaatggctt ggaccagcac ttccaaaaat actgattgcg gagtgggaaa
     1681 gaggactggc tctgagctgt ctgaatagaa ctgaagtttc aaacttcctt tttataaact
     1741 aggatgatga agaatagacc acagtcaact actgggcatt ggtgtaatag agcagtgccg
     1801 gtgaaattct gtattagtct tttaatttat gacatcacaa tgttgggatg gaaaaaaatc
     1861 acatttcaga gcgtgcaaaa caacggtatt taaagccatg catttgaaga tatgagttta
     1921 tcatcaaata cgggtttgtc ttaaaagtga ttcttgggtt agaagacatt tgttaattca
     1981 tggtctgcac aaaactgaaa ttggttgcag taacgattta ggcactcaaa gctggagaac
     2041 tgttaagcct tgtaaagatt acacttaaat caacaaaaag acctcttgcg gtggacattt
     2101 cttggcttat tttcctgtgg tcttctcagc atgatatgaa actatcggca aagtcagtgg
     2161 gataaactgg aaacagtcat ttggacacct tgttacaact tgtgctaatt gttgattgta
     2221 cacacatgac atgtggacat tatactacag cagtggtcac tcattttaac aaccaaactc
     2281 caccgtggtg gggatttacc cttgtcaagc aaggaagatg gtattttttc ccaaataaat
     2341 taaattaact tttatcataa ca
//
LOCUS       XM_032652254            1523 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 2 (MCOLN2), transcript variant
            X6, mRNA.
ACCESSION   XM_032652254
VERSION     XM_032652254.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1523
                     /gene="MCOLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116763995"
     CDS             74..1510
                     /gene="MCOLN2"
                     /codon_start=1
                     /product="mucolipin-2 isoform X4"
                     /protein_id="XP_032508145.1"
                     /db_xref="GeneID:116763995"
                     /translation="MARGVEALDLQVWSRASGPSRGPQCRDAMAHLDSEVTEECLRED
                     LKFYFMNPCEKFRARQQIPWKMGLQILKIVMVTTQLVRFGLSNQLVVAFKEENTVAFK
                     HLFLRGYSGVDEDEYSCSVYTQEDTYESIFFAISQFHQLRNLSLGTLGYGENEDNRIG
                     LKVCKQHYKKGTMFPSNETLNIDSDIEIDCIHLDLQTLSKNPQDWKNSSFFRLAFYRL
                     LQVEISFHLKGIDLQTIHSRELPDCYIFQNTIIFDNKAHSGKIKIYFDSDANIEECKD
                     LNISGSIQKNTQYVLVFDAFVIVICLASLILCTRSIVLGLRLRKRFLNFFLEKYKRCV
                     CNADQWEFINRWYILVIISDLMSIIGSILKMEIKAKNLTNYDLCSILLGTSTLFVWVG
                     VIRYLGYFQAYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHDKFENLN
                     TVAECLFSLVNGDDMYATFAHIQQKSLL"
     misc_feature    404..904
                     /gene="MCOLN2"
                     /note="extracytosolic/lumenal domain (ELD) found in
                     transient receptor potential channel mucolipin 2 (TRPML2);
                     Region: ELD_TRPML2; cd21071"
                     /db_xref="CDD:410967"
     misc_feature    order(419..421,431..433,440..448,452..454,500..523,
                     575..577,593..598,605..607,611..613,755..757,767..772,
                     791..796,836..838,842..856,869..877,893..898)
                     /gene="MCOLN2"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:410967"
ORIGIN      
        1 ggcgcttcta cccggcccta cagctcggcc gccacccagg aggtctcctt cccccgtcgc
       61 tccgggcagc accatggctc gtggcgtgga ggcgctggac ctgcaggtgt ggagcagagc
      121 ctcaggtccg tcccgggggc ctcagtgcag agatgcaatg gctcatcttg attctgaggt
      181 gacagaagaa tgtctgagag aagacctgaa gttttacttc atgaaccctt gtgaaaaatt
      241 ccgagccaga caacagattc cgtggaaaat gggtttgcag attttgaaga tagtcatggt
      301 caccacacag cttgttcgtt ttggtttaag taaccagctg gtggtggctt tcaaagaaga
      361 aaacactgtt gcttttaagc acttgttttt gagaggatat tccggtgtag atgaagatga
      421 atacagctgc agtgtatata ctcaagagga cacctatgag agcatctttt ttgctattag
      481 tcagtttcat cagctaagga atttatctct ggggaccctt ggttatggag aaaatgaaga
      541 caacagaatt ggattaaaag tctgtaagca gcattacaag aaagggacca tgtttccttc
      601 taatgagacg ctaaatattg acagcgacat tgaaatagac tgcattcacc tagacctcca
      661 gaccctctcc aagaaccctc aggactggaa gaactcatca ttcttcagac tggcatttta
      721 tcgcctcttg caagttgaaa tctcctttca tctcaaaggc attgacctgc agacgattca
      781 ttcccgagag ctaccagact gttacatctt tcagaatacg attatctttg acaataaagc
      841 tcacagtggc aaaatcaaaa tctactttga cagtgacgct aacatcgagg aatgtaaaga
      901 cttgaacatc tccggatcta ttcagaaaaa tactcagtat gtcctggtgt ttgatgcatt
      961 tgtcattgtg atttgcttgg catctcttat tctgtgcaca agatccattg ttctgggtct
     1021 aaggttacga aagagattct taaatttctt cctggagaag tacaagcgat gtgtgtgtaa
     1081 tgccgaccaa tgggagttca tcaacagatg gtatatcctg gtgattatca gcgacctaat
     1141 gtcaataatt ggatccatat taaaaatgga aattaaagcc aagaacctca caaattatga
     1201 tctgtgcagc attttgcttg gaacatctac gctctttgtc tgggttggcg tcatcagata
     1261 cttgggttac ttccaagcat ataatgtgct cattttaaca atgcaagcct cactgccaaa
     1321 agttcttcgc ttctgcgcgt gtgccggtat gatctatctg ggttacacct tctgcggctg
     1381 gattgtttta ggaccatatc acgacaagtt tgaaaatctg aacacagttg ctgagtgttt
     1441 gttttctctg gtcaacggtg atgacatgta tgcgaccttt gctcacatcc agcagaagag
     1501 cctcttgtag ggaaagagtg aag
//
LOCUS       XR_004352710            3187 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mucolipin 2 (MCOLN2), transcript variant
            X7, misc_RNA.
ACCESSION   XR_004352710
VERSION     XR_004352710.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3187
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3187
                     /gene="MCOLN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116763995"
     misc_RNA        1..3187
                     /gene="MCOLN2"
                     /product="mucolipin 2, transcript variant X7"
                     /db_xref="GeneID:116763995"
ORIGIN      
        1 ggcgcaccgg cagcccagtg ttccaccgcg tgggcccctt ttgaaggcgc ttctacccgg
       61 ccctacagct cggccgccac ccaggaggtc tccttccccc gtcgctccgg gcagcaccat
      121 ggctcgtggc gtggaggcgc tggacctgca ggtgtggagc agagcctcag gtccgtcccg
      181 ggggcctcag tgcagagatg caatggctca tcttgattct gaggtgacag aagaatgtct
      241 gagagaagac ctgaagtttt acttcatgaa cccttgtgaa aaattccgag ccagacaaca
      301 gattccgtgg aaaatgggtt tgcagatttt gaagatagtc atggtcacca cacagcttgt
      361 tcgttttggt ttaagtaacc agctggtggt ggctttcaaa gaagaaaaca ctgttgcttt
      421 taagcacttg tttttgagag gatattccgg tgtagatgaa gatgaataca gctgcagtgt
      481 atatactcaa gaggacacct atgagagcat cttttttgct attagtcagt ttcatcagct
      541 aaggaattta tctctgggga cccttggtta tggagaaaat gaagacaaca gaattggatt
      601 aaaagtctgt aagcagcatt acaagaaagg gaccatgttt ccttctaatg agacgctaaa
      661 tattgacagc gacattgaaa tagactgcat tcacctagac ctccagaccc tctccaagaa
      721 ccctcaggac tggaagaact catcattctt cagactggca ttttatcgcc tcttgcaagt
      781 tgaaatctcc tttcatctca aaggcattga cctgcagacg attcattccc gagagctacc
      841 agactgttac atctttcaga atacgattat ctttgacaat aaagctcaca gtggcaaaat
      901 caaaatctac tttgacagtg acgctaacat cgaggaatgt aaagacttga acatctccgg
      961 atctattcag aaaaatactc agtatgtcct ggtgtttgat gcatttgtca ttgtgatttg
     1021 cttggcatct cttattctgt gcacaagatc cattgttctg ggtctaaggt tacgaaagag
     1081 attcttaaat ttcttcctgg agaagtacaa gcgatgtgtg tgtaatgccg accaatggga
     1141 gttcatcaac agatggtata tcctggtgat tatcagcgac ctaatgtcaa taattggatc
     1201 catattaaaa atggaaatta aagccaagaa cctcacaaat tatgatctgt gcagcatttt
     1261 gcttggaaca tctacgctct ttgtctgggt tggcgtcatc agatacttgg gttacttcca
     1321 agcatataat gtgctcattt taacaatgca agcctcactg ccaaaagttc ttcgcttctg
     1381 cgcgtgtgcc ggtatgatct atctgggtta caccttctgc ggctggattg ttttaggacc
     1441 atatcacgac aaggtgtgta gcctcattct tccttctaca catgaagcac ttgagaccct
     1501 taaatgtggg tttccagcac tgaccttcat cccacgtttc tccagcacgt aacctggaca
     1561 tcagtaagca tgtatctttg catcggtttt ctttttcttt cccttttccg gatattgaag
     1621 tggcttcggg atattgaaac aagaactgca gggaaccaga aagcacgttt catggttgtc
     1681 tgggtctggc ttaggggatc acctatgaac ccagccagtc accaagtaag aagtgtttgg
     1741 acgtgagatc actgtcataa aaatgaaaat taaatgagga aaagtattac aacatctttc
     1801 taattcaaag tattaagggt ttcatccaaa ttaactgagg agactggagg aggataaaga
     1861 ctggccagaa tgaccatgtt aggtttatga ttaaaatgat aacacatctt gcctttgcag
     1921 gtggttttga tttcagtgtc ctcttagtgc cttattaaag gtcagtatct gaattctaaa
     1981 cgattgttgg acttcagtca gtatcataag ctcaaggaca tcaaagttat gttcagctgt
     2041 tcttgtttta aaatgataaa tttgattcaa agatatagca ggaaatgaaa tgaggtaggc
     2101 cttgttttca aaccaaaaaa aggaaaagca atgactgcat ctcacagttt ttcttccatg
     2161 ggcctctggc agtcagaaca acaaaaataa aactaatagc agctaacact tgatgctata
     2221 ctaagcattt ctctcttctc tctcatttaa tctcgtcaat agcccagagt actgttatct
     2281 tggcttaggt gctgtaccag gagagaagta aaaatataat gatgctggta taacagctcg
     2341 gccttaagtt ttgaccttga tcgttgcatt aaacaaaaca cggtcgaatc tagtttacaa
     2401 actcttcaca aaaatcgagc agtccacaaa actcaaacgt tcggtattgt cctactaaaa
     2461 taaatcttag taacttggca tgcacccagg cttgctcctc tttaagtgtt tcatttagta
     2521 cgtccaaaga gaactacccg ttttcctacc tgagaaactg tataatcaac aaagtgccca
     2581 tctctgggtt aatagtaaat cttggtaata ttattgcttt ccagttccat tccactgcct
     2641 taaaggtgac tcatgagtaa aaattgttct tcgatgttat ctctctgatc cggagaactg
     2701 tcttagtgcc caggaaaatt tacgtttttc ttcctcgctt gttttatggt ctggatgctt
     2761 tgccacattt ttgccactag agggcagtgt tgcaccacgc ggcataaata ctgagcctcc
     2821 gaggccagtg aatcaagtgg tcctatctcc gtggccctcc gccttcccta cgccatcatt
     2881 attttggagg gtgctcagaa aatgttgctt gaatttcact aaactagcta ccattctgaa
     2941 gtgctgtgtg ctagataggt atggtgccca tgttctttac ctcccttgcg aggttaaccc
     3001 ttccagtagc cctgtgggga aatatccttt gacagaaaat agcgatctta atatgttaat
     3061 tttcctgagg ttgtatagtt agtgaatggc agagatagga cgcacaccca ggtctgcttg
     3121 accctaatac acatgctttg agcaataccc taagatcaga agagcctctt gtagggaaag
     3181 agtgaag
//
LOCUS       XM_032652259            2805 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BTG anti-proliferation factor 2 (BTG2),
            mRNA.
ACCESSION   XM_032652259
VERSION     XM_032652259.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2805
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2805
                     /gene="BTG2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764040"
     CDS             135..623
                     /gene="BTG2"
                     /codon_start=1
                     /product="protein BTG2"
                     /protein_id="XP_032508150.1"
                     /db_xref="GeneID:116764040"
                     /translation="MSQASWTGKRTDMLPEIAAAVGFLSSLLRTRGCVNEQRLQVFSG
                     ALQEALTEHYKHHWFPEKPSKGSGYRCIRINHKMDPIISKAASQIGLGQPQLRQLLPS
                     ELTLWVDPYEVSYRIGEDGSICVLYEEAPVATSYGLLTCKNQMMLGRSSPSKNYIMAV
                     SS"
     misc_feature    171..515
                     /gene="BTG2"
                     /note="BTG family; Region: BTG; pfam07742"
                     /db_xref="CDD:462251"
ORIGIN      
        1 aggcgtgtag caggtaaagt ccgggcaaag ccctcgcgac cggcgagcga gcagaggctt
       61 acggttcggc acgtcccatc agagacctct ctctgacccc cgcctccgcc accgctccca
      121 gagttgcaca cgacatgagc caggccagct ggaccgggaa gagaacagac atgctcccgg
      181 agatcgccgc cgctgtgggt ttcctctcca gccttctgag gacccggggc tgcgtgaacg
      241 agcagcgact tcaggttttc agcggggctc tccaggaagc cctgacggag cactacaaac
      301 accactggtt tcctgaaaaa ccatccaagg gctccggcta ccgctgcatc cgaatcaacc
      361 acaaaatgga ccccatcatc agcaaagcgg ccagccagat tggactcggc cagcctcagc
      421 tgcgccagct gctgcccagt gagctgaccc tgtgggtgga cccctacgag gtgtcctacc
      481 gcattgggga ggatggctcc atctgcgtcc tgtacgagga ggccccggtg gccacctcct
      541 atgggctcct cacctgcaag aaccaaatga tgctgggcag gagcagcccc tcaaagaact
      601 acatcatggc agtctccagt tagatccccc gccgccccac ccggcgctct gctgtactca
      661 ttctgctgtg acaacaggcc actgcatacc tctacctggg gaatcgtatt ttaagtgaag
      721 agttatttat atatatatat atataattat ttttttaaga aaagggggga aaaaaaacca
      781 aaagattttt ttaagaaaaa aatccttaaa gggagctgct tggaagtggc ctccccaggt
      841 gcctttggag agaattgttg tgtgcttgag tctgggaggc agtgtctgga atgggagggg
      901 ggaatggtcc ggggagggca tgggtctggc caaggtgagg tgggagaagc ttggctagca
      961 acccaggaag atgtgagagg gagaaagcaa ggttagtaac tgtgaatgag agaggtcagg
     1021 atctgccctg gggagagaag agaagctgag ttcaaacctc tcacccagga cacctgcatc
     1081 cctggcccct ctcttactct tactcagggc cattcaagcc tggacttaaa tcatacttta
     1141 ttgcctaatc ttctctttca atttttgatg agatcctagg cagagagtga aaaggcctct
     1201 cctgattcct tctgtcccga gcagcttttc ttgaaatcat gacttgtttc taattctatt
     1261 ctcagggggc tgtagatgtt gcttcccacc aagaatataa agctttttgt tttgggagtc
     1321 cagggagtga ggcaggggtt gagggttatt ggagttggga gagaagggca ctctgcacaa
     1381 aacctttgcc ttgctatgag ctgctctgta tgtgagtatg tgtggcaaat accttggggt
     1441 tgatttgcaa tggaattttg ggacccatag agtatccact gggatatttt ttggccaaaa
     1501 cctttctttt tgtaaccaga cggaagtcct cgtgatgatg ccattatccc tttgagaggt
     1561 ggctcaaaag ctacagggaa cttcaggtcc ttgaatactg ccttcttttt aaaagcacaa
     1621 cactcctctc taactgccgc cccgccgccc cccccccacc ccccgccact cctctcccct
     1681 tctggttggg tcatggagct accctatttt ctaggacaag agttctcagt cactgtgcaa
     1741 tatggcctcc tgggtcccag gaggatgtgg aggagaactg gctctcacaa cctcctggtg
     1801 ccctggtggg cttaaggaac catttctccc tctgtcctcc ggactatggc tggatgctta
     1861 gccttgtgga tattccttgg ctgaatggga gaatgcccca agttctgcag gagtacttgg
     1921 tattcttgta gggctgacac taaaagccaa accttgggca ttgttttttc tccctggtgc
     1981 tcagagcacc tgtgggagag gctactgtct ctctcagtac aatccaaatt tgtctataga
     2041 cttgtgcaat actcactgtt ctgggttgga gaaaaatgga aaattacaca gggaagaaat
     2101 ctccttcctt cagtttctcg gtgacattag tgagggatcc tcagaaggcc ttgagtttcc
     2161 caaacccgaa tcaccttaag aaggatgtag ctagaacatc tggtcaacct ggctaccctc
     2221 ctgctgttgc ctttagtgag gaaactttct ccccactgcc agtccccttt cctggatttc
     2281 ttacatgctc aattctgact caagggtgct agttaccaaa cactccccta cccattcctg
     2341 ccagtactgc ctcttcaact ttccagatcc cgagtacctt cccagatcct ttttccagtc
     2401 cttattgctt taaagttaac ttcaggccag tagacccaag agctcatttt ctggtctgtg
     2461 ggttgaaaca aagctgtgaa tcactgcaga ttgctgttgc atcttgtctg caaacaggtc
     2521 cctgcctttt tataagcagc ctcacggtct cattcttaat cttttctctc ttctttttca
     2581 cgttcacttt aaaaacaaca aaacacccag agctggactg ttgagcaggc ctgtctctcc
     2641 cgttaagtaa aaataagtag tacgtttgta agctattctg acagaaaaga caaaggttac
     2701 taattgtata atagtgtttt tatatggaag aatgtacagc tttatggaca aatggacaaa
     2761 tgtacacttt tttttggttt ctttaataaa aatgtagcag atgaa
//
LOCUS       XM_032652269            1498 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rab geranylgeranyltransferase subunit
            beta (RABGGTB), transcript variant X1, mRNA.
ACCESSION   XM_032652269
VERSION     XM_032652269.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1498
                     /gene="RABGGTB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 5 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764061"
     CDS             45..1040
                     /gene="RABGGTB"
                     /codon_start=1
                     /product="geranylgeranyl transferase type-2 subunit beta
                     isoform X1"
                     /protein_id="XP_032508160.1"
                     /db_xref="GeneID:116764061"
                     /translation="MGTPQKDVIIKSDAPDTLLVEKHADYIASYGSKKDDYEYCMSEY
                     LRMSGIYWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAV
                     QILTLYDSINVIDVNKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLD
                     AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHRVNSDLLGWW
                     LCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETG
                     GFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEILRRVNVQPELVS"
     misc_feature    96..947
                     /gene="RABGGTB"
                     /note="Geranylgeranyltransferase type II (GGTase-II)_like
                     proteins containing the protein prenyltransferase (PTase)
                     domain, beta subunit (alpha 6 - alpha 6 barrel fold).
                     GGTase-IIs are a subgroup of the protein prenyltransferase
                     family of lipid-modifying...; Region: GGTase-II; cd02894"
                     /db_xref="CDD:239224"
     misc_feature    order(165..167,174..179,186..188,198..200,324..326,
                     330..335,339..344,474..476,483..488,612..614,618..620,
                     630..632,756..758,762..767,774..776,882..884,909..914)
                     /gene="RABGGTB"
                     /note="active site cavity [active]"
                     /db_xref="CDD:239224"
     misc_feature    order(174..179,186..188,330..335,474..476,756..758,
                     882..884)
                     /gene="RABGGTB"
                     /note="peptide binding pocket [active]"
                     /db_xref="CDD:239224"
     misc_feature    order(186..188,195..197,474..476,483..485,612..614,
                     618..620,630..632,738..740,747..749,765..767,774..776,
                     909..911)
                     /gene="RABGGTB"
                     /note="lipid binding pocket [chemical binding];
                     lipid-binding site"
                     /db_xref="CDD:239224"
     misc_feature    order(459..461,573..575,603..608,621..623,693..695,
                     702..704,708..713,738..746)
                     /gene="RABGGTB"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:239224"
     misc_feature    order(756..758,762..764,912..914)
                     /gene="RABGGTB"
                     /note="Zn2+ binding site [ion binding]; other site"
                     /db_xref="CDD:239224"
ORIGIN      
        1 aaatccgccc agcgacaaga ctagttctct tttcggtctc agacatgggc acaccgcaga
       61 aggatgttat tatcaagtca gatgcacccg acaccctatt agtggagaag catgcagatt
      121 atatagcatc ctatggctca aagaaagatg attacgaata ctgtatgtct gaatatttga
      181 gaatgagtgg catctattgg ggtctgactg taatggatct catgggacag ctacatcgca
      241 tgaatagaga agagattctg acatttatta agtcttgtca acacgagtgt ggtggaataa
      301 gtgctagtat tggacatgat cctcatcttt tgtacactct tagtgctgtc cagattctta
      361 ctctctatga tagtattaat gttattgatg taaataaagt tgtggaatat gttcagagtc
      421 tacagaaaga agatggttct ttcgctggag atatttgggg agaaatcgac acaagattct
      481 ctttttgtgc ggtggcaacc ttggctctat tggggaagct ggatgctatt aatgtggaaa
      541 aggcaatcga atttgtttta tcatgtatga actttgatgg tggatttggt tgcaggccag
      601 gttctgaatc ccatgctggg cagatctatt gttgcacagg attcctggct attactagtc
      661 agttgcatcg agtaaattct gatttacttg gttggtggct ttgtgaacga cagcttccat
      721 caggtggact caatggaagg ccagagaagt taccagatgt gtgctattct tggtgggtgt
      781 tggcttccct aaagataatt ggaaggcttc actggattga cagagagaaa ctgcgcagtt
      841 tcattttagc atgtcaagat gaagaaacgg gaggatttgc ggacaggcca ggagatatgg
      901 tagatccttt tcatactcta tttggaattg ctggattgtc acttttggga gaagaacaga
      961 ttaaacctgt tagccctgtt ttttgcatgc ctgaagaaat acttcggaga gtgaatgttc
     1021 agcctgaact agtgagctag attagatccc ttgatgcaaa agttgcttag tgtagtttta
     1081 ctgtcttaac atttcagtat ttgaagtgct taacaaactt aatggctgcc atgttaatat
     1141 tttgtacatg aattgtgttg attttaataa attatataat tatacatact gtaaattaga
     1201 gacctttatt gtaccttcag ctttccgttt tcttctggaa tgctgttatt ctgagcgtaa
     1261 tattttgttt atgcttcagt gtatttatct tgtttgtctc cataacagca aactgagttg
     1321 aactctagct gatgaagtct tgtgttctga ttttcccatg tactcccttg atatgttata
     1381 tataactata gttaatataa attggtcttt gtcaatgaga atgttaactg ataaagaatt
     1441 gatgaacccc atagaaatta aaagatgaaa aaaaataaat ggctgaaatt tgggaata
//
LOCUS       XM_032652276            1269 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rab geranylgeranyltransferase subunit
            beta (RABGGTB), transcript variant X2, mRNA.
ACCESSION   XM_032652276
VERSION     XM_032652276.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1269
                     /gene="RABGGTB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764061"
     CDS             16..813
                     /gene="RABGGTB"
                     /codon_start=1
                     /product="geranylgeranyl transferase type-2 subunit beta
                     isoform X2"
                     /protein_id="XP_032508167.1"
                     /db_xref="GeneID:116764061"
                     /translation="MGTPQKDVIIKSDAPDTLLVEKHADYIASYGSKKDDYILTLYDS
                     INVIDVNKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAI
                     EFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHRVNSDLLGWWLCERQLPS
                     GGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGD
                     MVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEILRRVNVQPELVS"
     misc_feature    <127..720
                     /gene="RABGGTB"
                     /note="Geranylgeranyltransferase type II (GGTase-II)_like
                     proteins containing the protein prenyltransferase (PTase)
                     domain, beta subunit (alpha 6 - alpha 6 barrel fold).
                     GGTase-IIs are a subgroup of the protein prenyltransferase
                     family of lipid-modifying...; Region: GGTase-II; cd02894"
                     /db_xref="CDD:239224"
     misc_feature    order(232..234,346..348,376..381,394..396,466..468,
                     475..477,481..486,511..519)
                     /gene="RABGGTB"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:239224"
     misc_feature    order(247..249,256..258,385..387,391..393,403..405,
                     511..513,520..522,538..540,547..549,682..684)
                     /gene="RABGGTB"
                     /note="lipid binding pocket [chemical binding];
                     lipid-binding site"
                     /db_xref="CDD:239224"
     misc_feature    order(529..531,535..537,685..687)
                     /gene="RABGGTB"
                     /note="Zn2+ binding site [ion binding]; other site"
                     /db_xref="CDD:239224"
ORIGIN      
        1 ttttcggtct cagacatggg cacaccgcag aaggatgtta ttatcaagtc agatgcaccc
       61 gacaccctat tagtggagaa gcatgcagat tatatagcat cctatggctc aaagaaagat
      121 gattacattc ttactctcta tgatagtatt aatgttattg atgtaaataa agttgtggaa
      181 tatgttcaga gtctacagaa agaagatggt tctttcgctg gagatatttg gggagaaatc
      241 gacacaagat tctctttttg tgcggtggca accttggctc tattggggaa gctggatgct
      301 attaatgtgg aaaaggcaat cgaatttgtt ttatcatgta tgaactttga tggtggattt
      361 ggttgcaggc caggttctga atcccatgct gggcagatct attgttgcac aggattcctg
      421 gctattacta gtcagttgca tcgagtaaat tctgatttac ttggttggtg gctttgtgaa
      481 cgacagcttc catcaggtgg actcaatgga aggccagaga agttaccaga tgtgtgctat
      541 tcttggtggg tgttggcttc cctaaagata attggaaggc ttcactggat tgacagagag
      601 aaactgcgca gtttcatttt agcatgtcaa gatgaagaaa cgggaggatt tgcggacagg
      661 ccaggagata tggtagatcc ttttcatact ctatttggaa ttgctggatt gtcacttttg
      721 ggagaagaac agattaaacc tgttagccct gttttttgca tgcctgaaga aatacttcgg
      781 agagtgaatg ttcagcctga actagtgagc tagattagat cccttgatgc aaaagttgct
      841 tagtgtagtt ttactgtctt aacatttcag tatttgaagt gcttaacaaa cttaatggct
      901 gccatgttaa tattttgtac atgaattgtg ttgattttaa taaattatat aattatacat
      961 actgtaaatt agagaccttt attgtacctt cagctttccg ttttcttctg gaatgctgtt
     1021 attctgagcg taatattttg tttatgcttc agtgtattta tcttgtttgt ctccataaca
     1081 gcaaactgag ttgaactcta gctgatgaag tcttgtgttc tgattttccc atgtactccc
     1141 ttgatatgtt atatataact atagttaata taaattggtc tttgtcaatg agaatgttaa
     1201 ctgataaaga attgatgaac cccatagaaa ttaaaagatg aaaaaaaata aatggctgaa
     1261 atttgggaa
//
LOCUS       XM_032652289            7240 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X1, mRNA.
ACCESSION   XM_032652289
VERSION     XM_032652289.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7240
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7240
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             511..1437
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508180.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    931..1368
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 gaggccgcag cgcgcctggg accgggccgc gccttccgcc gggtccgcgg ggcggggtcc
       61 cggagcacct gccccgcctt gcggagtcgc ctcggccagc ggagacccct ccgtgtctgg
      121 accccggccc caccttcgga ctcttatcac atcacctcct cctggaagct accctgattg
      181 tcttcatctc ctttcttgaa atctggtgtc tcagaagtta gcagaaggct tgtgtaaatg
      241 ccctaggtgt gtgctgttgg gaggggcaca gccccctgtg atgggaacac cacattcaga
      301 ttcatcagtt tggaggaccc cttccacagt ctgcccaggc tggagccagt tttgttctgc
      361 ctgttctcat ttttggctgt gaaaacaaca gtcacgctta ctgaatattt actccgtgcc
      421 tgataccgtt ccaggcactt tcacctgcac taatttaatc cttacaacag tcctacgagg
      481 gttgcctgag gccctgccgc cccgtggatc atgtttaacg gggagccagt tccagcctca
      541 gctgcggcct ccaggaacgt ggtgcggagc tccagcatca gcggcgaaat ctgcggaccc
      601 cagcaggctg gggacgggac cgggaccacc acggccaaga agcggcgcag cagcctcggg
      661 gccaagatgg tggccatcgt gggcctgacc cagtggagca ggggcacact ccagctcccc
      721 caggctgaag gggccaccaa gaaactgcgc agcaacatcc ggcggagcac ggagacgggt
      781 gttgccgtgg agatgcggag tcgggtccct cgccagggca gccgggagtc cacggacggg
      841 agcaccaaca gcaatagctc cgatggcacg ttcatattcc ccaccacccg gcttggaggt
      901 gaaagccagt tcagcgattt cctggatggc ctgggaccag cccagattgt tgggcgacag
      961 acgctggcaa cgccaccaat gggggatgtg cacattgcca tcatggaccg gagcagccag
     1021 ctggaggtgg aagtgattga ggctcggggc ctgaccccca aaccaggctc caaatccctc
     1081 ccagccacct atatcaaggt ttacctactt gagaacgggg cctgcttggc caagaagaag
     1141 acaaaggtgg ccaagaagac ctgtgatccc ctgtaccagc aggctctgct ctttgacgag
     1201 gggccccagg gcaaggtgct gcaggtgatt gtctggggag actatggccg aatggaccac
     1261 aagtgcttca tgggcatggc ccagatcatg ctggacgagc tggacctgag tgctgcggtc
     1321 accggctggt acaaactctt ccccacgtcc tcagtggcag actctacgct cggctccctc
     1381 accaggcgcc tgtcccagtc ctccctggag agtgccacga gcccctcagg ctcctaaggg
     1441 cctcaggaag aggcctggat gcagtgtggg aaggggtgct gccacccccc gtctcctccc
     1501 ctgtacatag tcttcacgtc tttctggacc ccttgccttg ctgcatgcct gttggctact
     1561 gggcctgtcc cagctggcag tggagactct agtatgtgtg cgtgtgtgtt tgtgtgtgtg
     1621 tctgtgtgtg accatgttag atctgttcat ttgtctgggt gtatttggtc ttagtgacta
     1681 tatgggctaa aatccacgtc tctctgtgtc tcgttgtaaa gaaacccaaa ggagagttgc
     1741 gtggacggga ctccacttga gtccaggggt ggaagtggga gacgcagcca ttggtccatc
     1801 ccacctggtc ctaggctcag ggcagagcct gcgtgtcccc gcctgtgcct gttcttggtg
     1861 gtccctgctt agttttctgt cttgttcttt gttccacctc tgcctctccc agcgcctctg
     1921 ctcttttttg agaaatgtag cgtccactgc agctggccac agcgaggccc ctctgggaac
     1981 cctgacaccc ctcctcttca ctgggcactc cggctgctct tcccaccgaa tgcatccaca
     2041 gcatgtagca tctcacctag cgccctggcc agggctccgg gaggcagacg atgccgggga
     2101 gctgagggct taaagaccgc tttctccctc gggctggcgc cacctccttc ctacaagtga
     2161 gattgaagga ggtgtcagtt cccggggttg caggccaggt accttggagg aaagtgctgg
     2221 tacctccctt agaactgttc acctcctgtt tccctccaag cctcctcact tgcgacatgc
     2281 caaaggagct ctcccagcgg accccaggtg gtgtggagtg gacggtcttg acatgcaaga
     2341 ggttggcctc atagggacgt tacctgccaa agtgggcagc ccctggcggc acctgtgtcc
     2401 atcccaggtc cggagagtgg ccctgtgccc ctccgggctc gtcctggagg ggcctggctt
     2461 gttgaggatg tgcccagggc agggctgctg gcaggaatga ggagggctgg ggctgacttg
     2521 ctctgagaag cctgtccgac ctttggggat tagctgcatg aagttgatta ttgggggctc
     2581 tatttttttt tttttttttt ttttctcttt tccagaccag ggtccatgtc tgggagctca
     2641 gattcactga ggcttcagcc tcctggctcc acggacagct tggctgtaga ctctagacca
     2701 tcacggtcac cagctctgta taagcaatac tcacccctct cggccttcct gccccctgcc
     2761 ctctgccgct gccctctgga gggtagcctg gcctgctcta gacaccgcgc ctgcctctgc
     2821 tttctttcca cccttgtctg gttggagctt cccaaagcca ctcaaaccct gacctgattg
     2881 gacagctggg ccctgggggt gggcaccagg gcctggactg gaccttgtga gatgtctgct
     2941 gggaatcctg aagtctggtc tgggagtgcc caaatctgtc cctctccttc ctcaggtcta
     3001 gcatgaaagg caagaggttg cccaggaggt ggacacagca gcccttgggt tcacgtctgg
     3061 tggggtggac agaggcagca ggagggtcaa ggcctgggac gggctcgcgc tctgcctctt
     3121 ccccggaggg gtcaaggcct gggacgggct cgcgctctgc ctcttcccca gatatcaccc
     3181 ccgagagctg cacggactct aacccgcata cgtggggatc cgtggagagg tgcttggact
     3241 ccatccataa gcgaagccag ccgggcctgg gggtcgcttc cgaggcagga aggtggagac
     3301 agaggctgag acagagccat ccccaccgag gggtcctttc tggcaggaac cacattaggc
     3361 tgaagccagg gcctggccac ctccctcctg tgaaaaccag ggggagaagc caggtcccca
     3421 ctggtcctgc ccacagacaa aaagtgggtg agggcagtaa ggacaagata agctcctggg
     3481 ctcctgactc ctgctggagg ctccattcct gtatcatcat ggcgggaacg cttatgtgtg
     3541 tggagagaga gacagctagg ctgagttttc tctttctgca gagattctct cctagggtca
     3601 gactgggtaa cgcatgcatt tctcatgttt ctaaaataag gcaaagggct ctatgctctt
     3661 agatcctagg gtggggagtg ggggtgggaa ctcgcttgca aaagcgtatt tctgtgtcct
     3721 gtgggtgatg cagagccgcc agcctcagaa tggttgaaaa tccttgacgc ctttggggtg
     3781 gtgggatgat cagagacccg caggatggcg tagacatttg ctgacgtggc accgagcggt
     3841 gatacgcaga ccgtgcggtt acccccaggg aatgggggta tcagtgcagg gtgtcaccct
     3901 cgttcctcta gaggcgcagc aagacagaag gagctaccag cagaggctgc tgctggggag
     3961 ctgaaggctg ctggcccctt gcctctgagg aaggttggct ggcacaggga aagttctagc
     4021 cagaggtggg gcctgacatg tcggtgactt gggctgacct gcctacgacc cccagctgcc
     4081 aagactgccc aagagttggg ccactccact gttccacctc gataatggga ggtcattccc
     4141 cacacaagtt gatgctgggg aattatttct aaccctttgt accaaattaa gttactaatc
     4201 cccacctgga tttttctccc atgagggtaa agtcaagtga gactccgtgt taaactcctg
     4261 ggtttaaggg tctgtctctc agcctcctgg atgcaggggc ttgtttgaaa agctgttctg
     4321 gagcaagcct gtcccaggag aggagggagc acacgtgtga ctgctgccct tccctggagg
     4381 gggcagcatc tgtcccttga aggcatggcg gggagggaag gaacatgatc cccccagaca
     4441 ctgttagatg cagtgtcctg actccacatg ccctctcctt accccagggg accctggggc
     4501 tgatgacagg gtgggctctt tgtcattcca tctccctctg ctcaggcagg attcgtggaa
     4561 gatgtggcag agacagcagt ggtcctgcag cgatgctggg ctgagggcag gaaccgtgac
     4621 agatgatcca gaacatctgt cttcacgttt ctgctctgtt caatctgtcc cacttccttc
     4681 atagactcct tccctaaagg gaagtctgtg atgggtcttt ggtatgaatc aggctccagc
     4741 aaatggggcc aagtcttggt tcttccctga agaatcatat cccctttgtc aagccatctc
     4801 ctaaactact ccccacccag tctctccccc cacccagcac tcctaggaaa ggagccctca
     4861 ggaggctctc agtatgcagc aagcccaggc actgccagca tttcaggggg ccgagagaga
     4921 gggtgtccct ctagctcacc actcgtggga tcactggttc tcccaggggc ctgaccccca
     4981 ccagggcaag catgcctgag ctcttcttta ctgccagcct tgaggagagc agaagcctca
     5041 cacccctttc aaagacgcta gagccctcca agggtactct tttggaaatg aaatgtagca
     5101 caatcttaga ctgcgttacc aggagccctg gcacgcaacc agggttcttg ctccacaccc
     5161 tgctgtccag gagatgccgt gctcctcccc cgccggggct ccagagctcc tgatacctcc
     5221 ggttccccat cttcagccca gaaagcatca gggcttcagg aaagctgctc ttccgcttct
     5281 ttgattactt cctgcactgt gcgggagccc gtgcgagcaa ctgctgcctt tgcttggtgg
     5341 cggagacagg tggcgtgttc ttcagggcca ggtggtccag cagggtttcc gcactggctg
     5401 caaggagggg gaaaagaaga ggcctgctgc cctgccgact gctccctttc tcttcctctc
     5461 cccggagttt tcttctccga tatcctgaca cagaaagagg ttctctaaaa tgctgcttcc
     5521 tatactggat taccgttcac tgaatgatca ggaaggagat aggaatgtag actcatccct
     5581 tgccttctcc ttcaagtctg cttttcactc aggtcagaag aaattgggtc aaaacaaaac
     5641 aatcatgact gaagggcagg ggaaccccgc ccgatccagt gaggcctgat gggggctgga
     5701 taagcctagt ctggctggga aagggttatt ttgagagtgc ctgagcgtct cagagcgacg
     5761 tcagtgatgc caaagagagc gacttggcct cctcgggccc cagctctgcc agctgagccg
     5821 cacacatgca gctcaggtgt cagcatgccc gatggtggga ccttgttctc tgacaaaggg
     5881 cttaatcttt ccatgtagca aagcaacttc ccctccccca gaccctgagc tcaggctttt
     5941 gtgggcccag caaggctgtg cctgtgaagg aaactggcat tcccgcagag gcccagactg
     6001 gcttggggag gatgctcgtc aaaaagcatg agtgttactg ctctgggaaa accttcccag
     6061 gctctgattg gaaacttggc cagtaaggac aggagccttc gccctccctg ggagctcaca
     6121 ctgatgccag gaagggtcct tgggactggg ttccagagag cttggcaaag agaaatgggc
     6181 cctgggaatt ccaaaggcaa cagagcatcc gccccaatgg tcagtggcct ggacagctgg
     6241 ctacggagaa tcaaaggcta tcacatacag gcaagacttg tgcaagactc ctcacttttc
     6301 tgggcctcag cttcctcata tgcaaaacca gagcatttgc tagttactcc acggttccct
     6361 ccaggtttta agtctaatct ggagttgatg agggctgtga gcctggtgca cccggcacct
     6421 ggctccacag gctggttcct tccagacctg ggtgcccaag ctgggtgcag gtcctcaccc
     6481 gtccatgccc agatgctgct tctgacaaga actctgggaa tcctaacaga ctcttcttct
     6541 tccacctctt ccgggtttgt tgttgttttc ttacgtaatg agatcattaa gggttgtcta
     6601 caatggactt tttccaaggt gctgatgtga tgtcacaacc tcagatgcat cctgcgtagg
     6661 tcagtatccc caccagcaga tgaggctggg ttggtcctca tttctgcttc tagaatgaga
     6721 caatgggaga attttaaagg gagatgctct ctgatgggag gagagaggga acttatttcc
     6781 cttcaaagta ttttgcttct tgaaacaaaa aatgactctt ctccagaatg tcttttacca
     6841 gacaccatct cagcaggcag agtggctgct gctttcttag gaaaagttgg cctgattatt
     6901 ccatccactc ctttagaatg taaattcata ggaggcaaga accccttttt tagaatttct
     6961 aaatgcatcc tgcaaagaga gagagcagat agggactgag aagcacactg tttagataag
     7021 aagcaattag ccttttatat ctgtgctcta tacattttct atgtgcagca tctttccaaa
     7081 ctcgttgtgg ctcccaggtg gcaggtggat ggatgggaag gactgccggc tgtttcttac
     7141 aacactcttg ccaattccct tgaggagaaa attcttcaca tggcttctgc atgtacagta
     7201 tttgggcagc aaaaaatgat taaagtccgt tcgaaaatgg
//
LOCUS       XM_032652298            7243 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X2, mRNA.
ACCESSION   XM_032652298
VERSION     XM_032652298.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7243
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7243
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             514..1440
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508189.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    934..1371
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 gaggccgcag cgcgcctggg accgggccgc gccttccgcc gggtccgcgg ggcggggtcc
       61 cggagcacct gccccgcctt gcggagtcgc ctcggccagc ggagacccct ccgtgtctgg
      121 accccggccc caccttcgga ctcttatcac atcacctcct cctggaagct accctgattg
      181 tcttcatctc ctttcttgaa atctggtgtc tcagaagtta gcagaaggct tgtgtaaatg
      241 ccctaggtgt gtgctgttgg gaggggcaca gccccctgtg atgggaacac cacattcaga
      301 ttcatcagtt tgcaggagga ccccttccac agtctgccca ggctggagcc agttttgttc
      361 tgcctgttct catttttggc tgtgaaaaca acagtcacgc ttactgaata tttactccgt
      421 gcctgatacc gttccaggca ctttcacctg cactaattta atccttacaa cagtcctacg
      481 agggttgcct gaggccctgc cgccccgtgg atcatgttta acggggagcc agttccagcc
      541 tcagctgcgg cctccaggaa cgtggtgcgg agctccagca tcagcggcga aatctgcgga
      601 ccccagcagg ctggggacgg gaccgggacc accacggcca agaagcggcg cagcagcctc
      661 ggggccaaga tggtggccat cgtgggcctg acccagtgga gcaggggcac actccagctc
      721 ccccaggctg aaggggccac caagaaactg cgcagcaaca tccggcggag cacggagacg
      781 ggtgttgccg tggagatgcg gagtcgggtc cctcgccagg gcagccggga gtccacggac
      841 gggagcacca acagcaatag ctccgatggc acgttcatat tccccaccac ccggcttgga
      901 ggtgaaagcc agttcagcga tttcctggat ggcctgggac cagcccagat tgttgggcga
      961 cagacgctgg caacgccacc aatgggggat gtgcacattg ccatcatgga ccggagcagc
     1021 cagctggagg tggaagtgat tgaggctcgg ggcctgaccc ccaaaccagg ctccaaatcc
     1081 ctcccagcca cctatatcaa ggtttaccta cttgagaacg gggcctgctt ggccaagaag
     1141 aagacaaagg tggccaagaa gacctgtgat cccctgtacc agcaggctct gctctttgac
     1201 gaggggcccc agggcaaggt gctgcaggtg attgtctggg gagactatgg ccgaatggac
     1261 cacaagtgct tcatgggcat ggcccagatc atgctggacg agctggacct gagtgctgcg
     1321 gtcaccggct ggtacaaact cttccccacg tcctcagtgg cagactctac gctcggctcc
     1381 ctcaccaggc gcctgtccca gtcctccctg gagagtgcca cgagcccctc aggctcctaa
     1441 gggcctcagg aagaggcctg gatgcagtgt gggaaggggt gctgccaccc cccgtctcct
     1501 cccctgtaca tagtcttcac gtctttctgg accccttgcc ttgctgcatg cctgttggct
     1561 actgggcctg tcccagctgg cagtggagac tctagtatgt gtgcgtgtgt gtttgtgtgt
     1621 gtgtctgtgt gtgaccatgt tagatctgtt catttgtctg ggtgtatttg gtcttagtga
     1681 ctatatgggc taaaatccac gtctctctgt gtctcgttgt aaagaaaccc aaaggagagt
     1741 tgcgtggacg ggactccact tgagtccagg ggtggaagtg ggagacgcag ccattggtcc
     1801 atcccacctg gtcctaggct cagggcagag cctgcgtgtc cccgcctgtg cctgttcttg
     1861 gtggtccctg cttagttttc tgtcttgttc tttgttccac ctctgcctct cccagcgcct
     1921 ctgctctttt ttgagaaatg tagcgtccac tgcagctggc cacagcgagg cccctctggg
     1981 aaccctgaca cccctcctct tcactgggca ctccggctgc tcttcccacc gaatgcatcc
     2041 acagcatgta gcatctcacc tagcgccctg gccagggctc cgggaggcag acgatgccgg
     2101 ggagctgagg gcttaaagac cgctttctcc ctcgggctgg cgccacctcc ttcctacaag
     2161 tgagattgaa ggaggtgtca gttcccgggg ttgcaggcca ggtaccttgg aggaaagtgc
     2221 tggtacctcc cttagaactg ttcacctcct gtttccctcc aagcctcctc acttgcgaca
     2281 tgccaaagga gctctcccag cggaccccag gtggtgtgga gtggacggtc ttgacatgca
     2341 agaggttggc ctcataggga cgttacctgc caaagtgggc agcccctggc ggcacctgtg
     2401 tccatcccag gtccggagag tggccctgtg cccctccggg ctcgtcctgg aggggcctgg
     2461 cttgttgagg atgtgcccag ggcagggctg ctggcaggaa tgaggagggc tggggctgac
     2521 ttgctctgag aagcctgtcc gacctttggg gattagctgc atgaagttga ttattggggg
     2581 ctctattttt tttttttttt tttttttctc ttttccagac cagggtccat gtctgggagc
     2641 tcagattcac tgaggcttca gcctcctggc tccacggaca gcttggctgt agactctaga
     2701 ccatcacggt caccagctct gtataagcaa tactcacccc tctcggcctt cctgccccct
     2761 gccctctgcc gctgccctct ggagggtagc ctggcctgct ctagacaccg cgcctgcctc
     2821 tgctttcttt ccacccttgt ctggttggag cttcccaaag ccactcaaac cctgacctga
     2881 ttggacagct gggccctggg ggtgggcacc agggcctgga ctggaccttg tgagatgtct
     2941 gctgggaatc ctgaagtctg gtctgggagt gcccaaatct gtccctctcc ttcctcaggt
     3001 ctagcatgaa aggcaagagg ttgcccagga ggtggacaca gcagcccttg ggttcacgtc
     3061 tggtggggtg gacagaggca gcaggagggt caaggcctgg gacgggctcg cgctctgcct
     3121 cttccccgga ggggtcaagg cctgggacgg gctcgcgctc tgcctcttcc ccagatatca
     3181 cccccgagag ctgcacggac tctaacccgc atacgtgggg atccgtggag aggtgcttgg
     3241 actccatcca taagcgaagc cagccgggcc tgggggtcgc ttccgaggca ggaaggtgga
     3301 gacagaggct gagacagagc catccccacc gaggggtcct ttctggcagg aaccacatta
     3361 ggctgaagcc agggcctggc cacctccctc ctgtgaaaac cagggggaga agccaggtcc
     3421 ccactggtcc tgcccacaga caaaaagtgg gtgagggcag taaggacaag ataagctcct
     3481 gggctcctga ctcctgctgg aggctccatt cctgtatcat catggcggga acgcttatgt
     3541 gtgtggagag agagacagct aggctgagtt ttctctttct gcagagattc tctcctaggg
     3601 tcagactggg taacgcatgc atttctcatg tttctaaaat aaggcaaagg gctctatgct
     3661 cttagatcct agggtgggga gtgggggtgg gaactcgctt gcaaaagcgt atttctgtgt
     3721 cctgtgggtg atgcagagcc gccagcctca gaatggttga aaatccttga cgcctttggg
     3781 gtggtgggat gatcagagac ccgcaggatg gcgtagacat ttgctgacgt ggcaccgagc
     3841 ggtgatacgc agaccgtgcg gttaccccca gggaatgggg gtatcagtgc agggtgtcac
     3901 cctcgttcct ctagaggcgc agcaagacag aaggagctac cagcagaggc tgctgctggg
     3961 gagctgaagg ctgctggccc cttgcctctg aggaaggttg gctggcacag ggaaagttct
     4021 agccagaggt ggggcctgac atgtcggtga cttgggctga cctgcctacg acccccagct
     4081 gccaagactg cccaagagtt gggccactcc actgttccac ctcgataatg ggaggtcatt
     4141 ccccacacaa gttgatgctg gggaattatt tctaaccctt tgtaccaaat taagttacta
     4201 atccccacct ggatttttct cccatgaggg taaagtcaag tgagactccg tgttaaactc
     4261 ctgggtttaa gggtctgtct ctcagcctcc tggatgcagg ggcttgtttg aaaagctgtt
     4321 ctggagcaag cctgtcccag gagaggaggg agcacacgtg tgactgctgc ccttccctgg
     4381 agggggcagc atctgtccct tgaaggcatg gcggggaggg aaggaacatg atccccccag
     4441 acactgttag atgcagtgtc ctgactccac atgccctctc cttaccccag gggaccctgg
     4501 ggctgatgac agggtgggct ctttgtcatt ccatctccct ctgctcaggc aggattcgtg
     4561 gaagatgtgg cagagacagc agtggtcctg cagcgatgct gggctgaggg caggaaccgt
     4621 gacagatgat ccagaacatc tgtcttcacg tttctgctct gttcaatctg tcccacttcc
     4681 ttcatagact ccttccctaa agggaagtct gtgatgggtc tttggtatga atcaggctcc
     4741 agcaaatggg gccaagtctt ggttcttccc tgaagaatca tatccccttt gtcaagccat
     4801 ctcctaaact actccccacc cagtctctcc ccccacccag cactcctagg aaaggagccc
     4861 tcaggaggct ctcagtatgc agcaagccca ggcactgcca gcatttcagg gggccgagag
     4921 agagggtgtc cctctagctc accactcgtg ggatcactgg ttctcccagg ggcctgaccc
     4981 ccaccagggc aagcatgcct gagctcttct ttactgccag ccttgaggag agcagaagcc
     5041 tcacacccct ttcaaagacg ctagagccct ccaagggtac tcttttggaa atgaaatgta
     5101 gcacaatctt agactgcgtt accaggagcc ctggcacgca accagggttc ttgctccaca
     5161 ccctgctgtc caggagatgc cgtgctcctc ccccgccggg gctccagagc tcctgatacc
     5221 tccggttccc catcttcagc ccagaaagca tcagggcttc aggaaagctg ctcttccgct
     5281 tctttgatta cttcctgcac tgtgcgggag cccgtgcgag caactgctgc ctttgcttgg
     5341 tggcggagac aggtggcgtg ttcttcaggg ccaggtggtc cagcagggtt tccgcactgg
     5401 ctgcaaggag ggggaaaaga agaggcctgc tgccctgccg actgctccct ttctcttcct
     5461 ctccccggag ttttcttctc cgatatcctg acacagaaag aggttctcta aaatgctgct
     5521 tcctatactg gattaccgtt cactgaatga tcaggaagga gataggaatg tagactcatc
     5581 ccttgccttc tccttcaagt ctgcttttca ctcaggtcag aagaaattgg gtcaaaacaa
     5641 aacaatcatg actgaagggc aggggaaccc cgcccgatcc agtgaggcct gatgggggct
     5701 ggataagcct agtctggctg ggaaagggtt attttgagag tgcctgagcg tctcagagcg
     5761 acgtcagtga tgccaaagag agcgacttgg cctcctcggg ccccagctct gccagctgag
     5821 ccgcacacat gcagctcagg tgtcagcatg cccgatggtg ggaccttgtt ctctgacaaa
     5881 gggcttaatc tttccatgta gcaaagcaac ttcccctccc ccagaccctg agctcaggct
     5941 tttgtgggcc cagcaaggct gtgcctgtga aggaaactgg cattcccgca gaggcccaga
     6001 ctggcttggg gaggatgctc gtcaaaaagc atgagtgtta ctgctctggg aaaaccttcc
     6061 caggctctga ttggaaactt ggccagtaag gacaggagcc ttcgccctcc ctgggagctc
     6121 acactgatgc caggaagggt ccttgggact gggttccaga gagcttggca aagagaaatg
     6181 ggccctggga attccaaagg caacagagca tccgccccaa tggtcagtgg cctggacagc
     6241 tggctacgga gaatcaaagg ctatcacata caggcaagac ttgtgcaaga ctcctcactt
     6301 ttctgggcct cagcttcctc atatgcaaaa ccagagcatt tgctagttac tccacggttc
     6361 cctccaggtt ttaagtctaa tctggagttg atgagggctg tgagcctggt gcacccggca
     6421 cctggctcca caggctggtt ccttccagac ctgggtgccc aagctgggtg caggtcctca
     6481 cccgtccatg cccagatgct gcttctgaca agaactctgg gaatcctaac agactcttct
     6541 tcttccacct cttccgggtt tgttgttgtt ttcttacgta atgagatcat taagggttgt
     6601 ctacaatgga ctttttccaa ggtgctgatg tgatgtcaca acctcagatg catcctgcgt
     6661 aggtcagtat ccccaccagc agatgaggct gggttggtcc tcatttctgc ttctagaatg
     6721 agacaatggg agaattttaa agggagatgc tctctgatgg gaggagagag ggaacttatt
     6781 tcccttcaaa gtattttgct tcttgaaaca aaaaatgact cttctccaga atgtctttta
     6841 ccagacacca tctcagcagg cagagtggct gctgctttct taggaaaagt tggcctgatt
     6901 attccatcca ctcctttaga atgtaaattc ataggaggca agaacccctt ttttagaatt
     6961 tctaaatgca tcctgcaaag agagagagca gatagggact gagaagcaca ctgtttagat
     7021 aagaagcaat tagcctttta tatctgtgct ctatacattt tctatgtgca gcatctttcc
     7081 aaactcgttg tggctcccag gtggcaggtg gatggatggg aaggactgcc ggctgtttct
     7141 tacaacactc ttgccaattc ccttgaggag aaaattcttc acatggcttc tgcatgtaca
     7201 gtatttgggc agcaaaaaat gattaaagtc cgttcgaaaa tgg
//
LOCUS       XM_032652302            7140 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X3, mRNA.
ACCESSION   XM_032652302
VERSION     XM_032652302.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7140
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7140
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             411..1337
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508193.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    831..1268
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 gccaggccta tattcacatc ccagctctgc ggttctgaga ctcttatcac atcacctcct
       61 cctggaagct accctgattg tcttcatctc ctttcttgaa atctggtgtc tcagaagtta
      121 gcagaaggct tgtgtaaatg ccctaggtgt gtgctgttgg gaggggcaca gccccctgtg
      181 atgggaacac cacattcaga ttcatcagtt tggaggaccc cttccacagt ctgcccaggc
      241 tggagccagt tttgttctgc ctgttctcat ttttggctgt gaaaacaaca gtcacgctta
      301 ctgaatattt actccgtgcc tgataccgtt ccaggcactt tcacctgcac taatttaatc
      361 cttacaacag tcctacgagg gttgcctgag gccctgccgc cccgtggatc atgtttaacg
      421 gggagccagt tccagcctca gctgcggcct ccaggaacgt ggtgcggagc tccagcatca
      481 gcggcgaaat ctgcggaccc cagcaggctg gggacgggac cgggaccacc acggccaaga
      541 agcggcgcag cagcctcggg gccaagatgg tggccatcgt gggcctgacc cagtggagca
      601 ggggcacact ccagctcccc caggctgaag gggccaccaa gaaactgcgc agcaacatcc
      661 ggcggagcac ggagacgggt gttgccgtgg agatgcggag tcgggtccct cgccagggca
      721 gccgggagtc cacggacggg agcaccaaca gcaatagctc cgatggcacg ttcatattcc
      781 ccaccacccg gcttggaggt gaaagccagt tcagcgattt cctggatggc ctgggaccag
      841 cccagattgt tgggcgacag acgctggcaa cgccaccaat gggggatgtg cacattgcca
      901 tcatggaccg gagcagccag ctggaggtgg aagtgattga ggctcggggc ctgaccccca
      961 aaccaggctc caaatccctc ccagccacct atatcaaggt ttacctactt gagaacgggg
     1021 cctgcttggc caagaagaag acaaaggtgg ccaagaagac ctgtgatccc ctgtaccagc
     1081 aggctctgct ctttgacgag gggccccagg gcaaggtgct gcaggtgatt gtctggggag
     1141 actatggccg aatggaccac aagtgcttca tgggcatggc ccagatcatg ctggacgagc
     1201 tggacctgag tgctgcggtc accggctggt acaaactctt ccccacgtcc tcagtggcag
     1261 actctacgct cggctccctc accaggcgcc tgtcccagtc ctccctggag agtgccacga
     1321 gcccctcagg ctcctaaggg cctcaggaag aggcctggat gcagtgtggg aaggggtgct
     1381 gccacccccc gtctcctccc ctgtacatag tcttcacgtc tttctggacc ccttgccttg
     1441 ctgcatgcct gttggctact gggcctgtcc cagctggcag tggagactct agtatgtgtg
     1501 cgtgtgtgtt tgtgtgtgtg tctgtgtgtg accatgttag atctgttcat ttgtctgggt
     1561 gtatttggtc ttagtgacta tatgggctaa aatccacgtc tctctgtgtc tcgttgtaaa
     1621 gaaacccaaa ggagagttgc gtggacggga ctccacttga gtccaggggt ggaagtggga
     1681 gacgcagcca ttggtccatc ccacctggtc ctaggctcag ggcagagcct gcgtgtcccc
     1741 gcctgtgcct gttcttggtg gtccctgctt agttttctgt cttgttcttt gttccacctc
     1801 tgcctctccc agcgcctctg ctcttttttg agaaatgtag cgtccactgc agctggccac
     1861 agcgaggccc ctctgggaac cctgacaccc ctcctcttca ctgggcactc cggctgctct
     1921 tcccaccgaa tgcatccaca gcatgtagca tctcacctag cgccctggcc agggctccgg
     1981 gaggcagacg atgccgggga gctgagggct taaagaccgc tttctccctc gggctggcgc
     2041 cacctccttc ctacaagtga gattgaagga ggtgtcagtt cccggggttg caggccaggt
     2101 accttggagg aaagtgctgg tacctccctt agaactgttc acctcctgtt tccctccaag
     2161 cctcctcact tgcgacatgc caaaggagct ctcccagcgg accccaggtg gtgtggagtg
     2221 gacggtcttg acatgcaaga ggttggcctc atagggacgt tacctgccaa agtgggcagc
     2281 ccctggcggc acctgtgtcc atcccaggtc cggagagtgg ccctgtgccc ctccgggctc
     2341 gtcctggagg ggcctggctt gttgaggatg tgcccagggc agggctgctg gcaggaatga
     2401 ggagggctgg ggctgacttg ctctgagaag cctgtccgac ctttggggat tagctgcatg
     2461 aagttgatta ttgggggctc tatttttttt tttttttttt ttttctcttt tccagaccag
     2521 ggtccatgtc tgggagctca gattcactga ggcttcagcc tcctggctcc acggacagct
     2581 tggctgtaga ctctagacca tcacggtcac cagctctgta taagcaatac tcacccctct
     2641 cggccttcct gccccctgcc ctctgccgct gccctctgga gggtagcctg gcctgctcta
     2701 gacaccgcgc ctgcctctgc tttctttcca cccttgtctg gttggagctt cccaaagcca
     2761 ctcaaaccct gacctgattg gacagctggg ccctgggggt gggcaccagg gcctggactg
     2821 gaccttgtga gatgtctgct gggaatcctg aagtctggtc tgggagtgcc caaatctgtc
     2881 cctctccttc ctcaggtcta gcatgaaagg caagaggttg cccaggaggt ggacacagca
     2941 gcccttgggt tcacgtctgg tggggtggac agaggcagca ggagggtcaa ggcctgggac
     3001 gggctcgcgc tctgcctctt ccccggaggg gtcaaggcct gggacgggct cgcgctctgc
     3061 ctcttcccca gatatcaccc ccgagagctg cacggactct aacccgcata cgtggggatc
     3121 cgtggagagg tgcttggact ccatccataa gcgaagccag ccgggcctgg gggtcgcttc
     3181 cgaggcagga aggtggagac agaggctgag acagagccat ccccaccgag gggtcctttc
     3241 tggcaggaac cacattaggc tgaagccagg gcctggccac ctccctcctg tgaaaaccag
     3301 ggggagaagc caggtcccca ctggtcctgc ccacagacaa aaagtgggtg agggcagtaa
     3361 ggacaagata agctcctggg ctcctgactc ctgctggagg ctccattcct gtatcatcat
     3421 ggcgggaacg cttatgtgtg tggagagaga gacagctagg ctgagttttc tctttctgca
     3481 gagattctct cctagggtca gactgggtaa cgcatgcatt tctcatgttt ctaaaataag
     3541 gcaaagggct ctatgctctt agatcctagg gtggggagtg ggggtgggaa ctcgcttgca
     3601 aaagcgtatt tctgtgtcct gtgggtgatg cagagccgcc agcctcagaa tggttgaaaa
     3661 tccttgacgc ctttggggtg gtgggatgat cagagacccg caggatggcg tagacatttg
     3721 ctgacgtggc accgagcggt gatacgcaga ccgtgcggtt acccccaggg aatgggggta
     3781 tcagtgcagg gtgtcaccct cgttcctcta gaggcgcagc aagacagaag gagctaccag
     3841 cagaggctgc tgctggggag ctgaaggctg ctggcccctt gcctctgagg aaggttggct
     3901 ggcacaggga aagttctagc cagaggtggg gcctgacatg tcggtgactt gggctgacct
     3961 gcctacgacc cccagctgcc aagactgccc aagagttggg ccactccact gttccacctc
     4021 gataatggga ggtcattccc cacacaagtt gatgctgggg aattatttct aaccctttgt
     4081 accaaattaa gttactaatc cccacctgga tttttctccc atgagggtaa agtcaagtga
     4141 gactccgtgt taaactcctg ggtttaaggg tctgtctctc agcctcctgg atgcaggggc
     4201 ttgtttgaaa agctgttctg gagcaagcct gtcccaggag aggagggagc acacgtgtga
     4261 ctgctgccct tccctggagg gggcagcatc tgtcccttga aggcatggcg gggagggaag
     4321 gaacatgatc cccccagaca ctgttagatg cagtgtcctg actccacatg ccctctcctt
     4381 accccagggg accctggggc tgatgacagg gtgggctctt tgtcattcca tctccctctg
     4441 ctcaggcagg attcgtggaa gatgtggcag agacagcagt ggtcctgcag cgatgctggg
     4501 ctgagggcag gaaccgtgac agatgatcca gaacatctgt cttcacgttt ctgctctgtt
     4561 caatctgtcc cacttccttc atagactcct tccctaaagg gaagtctgtg atgggtcttt
     4621 ggtatgaatc aggctccagc aaatggggcc aagtcttggt tcttccctga agaatcatat
     4681 cccctttgtc aagccatctc ctaaactact ccccacccag tctctccccc cacccagcac
     4741 tcctaggaaa ggagccctca ggaggctctc agtatgcagc aagcccaggc actgccagca
     4801 tttcaggggg ccgagagaga gggtgtccct ctagctcacc actcgtggga tcactggttc
     4861 tcccaggggc ctgaccccca ccagggcaag catgcctgag ctcttcttta ctgccagcct
     4921 tgaggagagc agaagcctca cacccctttc aaagacgcta gagccctcca agggtactct
     4981 tttggaaatg aaatgtagca caatcttaga ctgcgttacc aggagccctg gcacgcaacc
     5041 agggttcttg ctccacaccc tgctgtccag gagatgccgt gctcctcccc cgccggggct
     5101 ccagagctcc tgatacctcc ggttccccat cttcagccca gaaagcatca gggcttcagg
     5161 aaagctgctc ttccgcttct ttgattactt cctgcactgt gcgggagccc gtgcgagcaa
     5221 ctgctgcctt tgcttggtgg cggagacagg tggcgtgttc ttcagggcca ggtggtccag
     5281 cagggtttcc gcactggctg caaggagggg gaaaagaaga ggcctgctgc cctgccgact
     5341 gctccctttc tcttcctctc cccggagttt tcttctccga tatcctgaca cagaaagagg
     5401 ttctctaaaa tgctgcttcc tatactggat taccgttcac tgaatgatca ggaaggagat
     5461 aggaatgtag actcatccct tgccttctcc ttcaagtctg cttttcactc aggtcagaag
     5521 aaattgggtc aaaacaaaac aatcatgact gaagggcagg ggaaccccgc ccgatccagt
     5581 gaggcctgat gggggctgga taagcctagt ctggctggga aagggttatt ttgagagtgc
     5641 ctgagcgtct cagagcgacg tcagtgatgc caaagagagc gacttggcct cctcgggccc
     5701 cagctctgcc agctgagccg cacacatgca gctcaggtgt cagcatgccc gatggtggga
     5761 ccttgttctc tgacaaaggg cttaatcttt ccatgtagca aagcaacttc ccctccccca
     5821 gaccctgagc tcaggctttt gtgggcccag caaggctgtg cctgtgaagg aaactggcat
     5881 tcccgcagag gcccagactg gcttggggag gatgctcgtc aaaaagcatg agtgttactg
     5941 ctctgggaaa accttcccag gctctgattg gaaacttggc cagtaaggac aggagccttc
     6001 gccctccctg ggagctcaca ctgatgccag gaagggtcct tgggactggg ttccagagag
     6061 cttggcaaag agaaatgggc cctgggaatt ccaaaggcaa cagagcatcc gccccaatgg
     6121 tcagtggcct ggacagctgg ctacggagaa tcaaaggcta tcacatacag gcaagacttg
     6181 tgcaagactc ctcacttttc tgggcctcag cttcctcata tgcaaaacca gagcatttgc
     6241 tagttactcc acggttccct ccaggtttta agtctaatct ggagttgatg agggctgtga
     6301 gcctggtgca cccggcacct ggctccacag gctggttcct tccagacctg ggtgcccaag
     6361 ctgggtgcag gtcctcaccc gtccatgccc agatgctgct tctgacaaga actctgggaa
     6421 tcctaacaga ctcttcttct tccacctctt ccgggtttgt tgttgttttc ttacgtaatg
     6481 agatcattaa gggttgtcta caatggactt tttccaaggt gctgatgtga tgtcacaacc
     6541 tcagatgcat cctgcgtagg tcagtatccc caccagcaga tgaggctggg ttggtcctca
     6601 tttctgcttc tagaatgaga caatgggaga attttaaagg gagatgctct ctgatgggag
     6661 gagagaggga acttatttcc cttcaaagta ttttgcttct tgaaacaaaa aatgactctt
     6721 ctccagaatg tcttttacca gacaccatct cagcaggcag agtggctgct gctttcttag
     6781 gaaaagttgg cctgattatt ccatccactc ctttagaatg taaattcata ggaggcaaga
     6841 accccttttt tagaatttct aaatgcatcc tgcaaagaga gagagcagat agggactgag
     6901 aagcacactg tttagataag aagcaattag ccttttatat ctgtgctcta tacattttct
     6961 atgtgcagca tctttccaaa ctcgttgtgg ctcccaggtg gcaggtggat ggatgggaag
     7021 gactgccggc tgtttcttac aacactcttg ccaattccct tgaggagaaa attcttcaca
     7081 tggcttctgc atgtacagta tttgggcagc aaaaaatgat taaagtccgt tcgaaaatgg
//
LOCUS       XM_032652306            7073 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X4, mRNA.
ACCESSION   XM_032652306
VERSION     XM_032652306.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7073
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7073
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             344..1270
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508197.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    764..1201
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 gaggccgcag cgcgcctggg accgggccgc gccttccgcc gggtccgcgg ggcggggtcc
       61 cggagcacct gccccgcctt gcggagtcgc ctcggccagc ggagacccct ccgtgtctgg
      121 accccggccc caccttcgga ctcttatcac atcacctcct cctggaagct accctgattg
      181 tcttcatctc ctttcttgaa atctggtgtc tcagaagtta gcagaaggct tgtgtaaatg
      241 ccctaggtgt gtgctgttgg gaggggcaca gccccctgtg atgggaacac cacattcaga
      301 ttcatcagtt tgggttgcct gaggccctgc cgccccgtgg atcatgttta acggggagcc
      361 agttccagcc tcagctgcgg cctccaggaa cgtggtgcgg agctccagca tcagcggcga
      421 aatctgcgga ccccagcagg ctggggacgg gaccgggacc accacggcca agaagcggcg
      481 cagcagcctc ggggccaaga tggtggccat cgtgggcctg acccagtgga gcaggggcac
      541 actccagctc ccccaggctg aaggggccac caagaaactg cgcagcaaca tccggcggag
      601 cacggagacg ggtgttgccg tggagatgcg gagtcgggtc cctcgccagg gcagccggga
      661 gtccacggac gggagcacca acagcaatag ctccgatggc acgttcatat tccccaccac
      721 ccggcttgga ggtgaaagcc agttcagcga tttcctggat ggcctgggac cagcccagat
      781 tgttgggcga cagacgctgg caacgccacc aatgggggat gtgcacattg ccatcatgga
      841 ccggagcagc cagctggagg tggaagtgat tgaggctcgg ggcctgaccc ccaaaccagg
      901 ctccaaatcc ctcccagcca cctatatcaa ggtttaccta cttgagaacg gggcctgctt
      961 ggccaagaag aagacaaagg tggccaagaa gacctgtgat cccctgtacc agcaggctct
     1021 gctctttgac gaggggcccc agggcaaggt gctgcaggtg attgtctggg gagactatgg
     1081 ccgaatggac cacaagtgct tcatgggcat ggcccagatc atgctggacg agctggacct
     1141 gagtgctgcg gtcaccggct ggtacaaact cttccccacg tcctcagtgg cagactctac
     1201 gctcggctcc ctcaccaggc gcctgtccca gtcctccctg gagagtgcca cgagcccctc
     1261 aggctcctaa gggcctcagg aagaggcctg gatgcagtgt gggaaggggt gctgccaccc
     1321 cccgtctcct cccctgtaca tagtcttcac gtctttctgg accccttgcc ttgctgcatg
     1381 cctgttggct actgggcctg tcccagctgg cagtggagac tctagtatgt gtgcgtgtgt
     1441 gtttgtgtgt gtgtctgtgt gtgaccatgt tagatctgtt catttgtctg ggtgtatttg
     1501 gtcttagtga ctatatgggc taaaatccac gtctctctgt gtctcgttgt aaagaaaccc
     1561 aaaggagagt tgcgtggacg ggactccact tgagtccagg ggtggaagtg ggagacgcag
     1621 ccattggtcc atcccacctg gtcctaggct cagggcagag cctgcgtgtc cccgcctgtg
     1681 cctgttcttg gtggtccctg cttagttttc tgtcttgttc tttgttccac ctctgcctct
     1741 cccagcgcct ctgctctttt ttgagaaatg tagcgtccac tgcagctggc cacagcgagg
     1801 cccctctggg aaccctgaca cccctcctct tcactgggca ctccggctgc tcttcccacc
     1861 gaatgcatcc acagcatgta gcatctcacc tagcgccctg gccagggctc cgggaggcag
     1921 acgatgccgg ggagctgagg gcttaaagac cgctttctcc ctcgggctgg cgccacctcc
     1981 ttcctacaag tgagattgaa ggaggtgtca gttcccgggg ttgcaggcca ggtaccttgg
     2041 aggaaagtgc tggtacctcc cttagaactg ttcacctcct gtttccctcc aagcctcctc
     2101 acttgcgaca tgccaaagga gctctcccag cggaccccag gtggtgtgga gtggacggtc
     2161 ttgacatgca agaggttggc ctcataggga cgttacctgc caaagtgggc agcccctggc
     2221 ggcacctgtg tccatcccag gtccggagag tggccctgtg cccctccggg ctcgtcctgg
     2281 aggggcctgg cttgttgagg atgtgcccag ggcagggctg ctggcaggaa tgaggagggc
     2341 tggggctgac ttgctctgag aagcctgtcc gacctttggg gattagctgc atgaagttga
     2401 ttattggggg ctctattttt tttttttttt tttttttctc ttttccagac cagggtccat
     2461 gtctgggagc tcagattcac tgaggcttca gcctcctggc tccacggaca gcttggctgt
     2521 agactctaga ccatcacggt caccagctct gtataagcaa tactcacccc tctcggcctt
     2581 cctgccccct gccctctgcc gctgccctct ggagggtagc ctggcctgct ctagacaccg
     2641 cgcctgcctc tgctttcttt ccacccttgt ctggttggag cttcccaaag ccactcaaac
     2701 cctgacctga ttggacagct gggccctggg ggtgggcacc agggcctgga ctggaccttg
     2761 tgagatgtct gctgggaatc ctgaagtctg gtctgggagt gcccaaatct gtccctctcc
     2821 ttcctcaggt ctagcatgaa aggcaagagg ttgcccagga ggtggacaca gcagcccttg
     2881 ggttcacgtc tggtggggtg gacagaggca gcaggagggt caaggcctgg gacgggctcg
     2941 cgctctgcct cttccccgga ggggtcaagg cctgggacgg gctcgcgctc tgcctcttcc
     3001 ccagatatca cccccgagag ctgcacggac tctaacccgc atacgtgggg atccgtggag
     3061 aggtgcttgg actccatcca taagcgaagc cagccgggcc tgggggtcgc ttccgaggca
     3121 ggaaggtgga gacagaggct gagacagagc catccccacc gaggggtcct ttctggcagg
     3181 aaccacatta ggctgaagcc agggcctggc cacctccctc ctgtgaaaac cagggggaga
     3241 agccaggtcc ccactggtcc tgcccacaga caaaaagtgg gtgagggcag taaggacaag
     3301 ataagctcct gggctcctga ctcctgctgg aggctccatt cctgtatcat catggcggga
     3361 acgcttatgt gtgtggagag agagacagct aggctgagtt ttctctttct gcagagattc
     3421 tctcctaggg tcagactggg taacgcatgc atttctcatg tttctaaaat aaggcaaagg
     3481 gctctatgct cttagatcct agggtgggga gtgggggtgg gaactcgctt gcaaaagcgt
     3541 atttctgtgt cctgtgggtg atgcagagcc gccagcctca gaatggttga aaatccttga
     3601 cgcctttggg gtggtgggat gatcagagac ccgcaggatg gcgtagacat ttgctgacgt
     3661 ggcaccgagc ggtgatacgc agaccgtgcg gttaccccca gggaatgggg gtatcagtgc
     3721 agggtgtcac cctcgttcct ctagaggcgc agcaagacag aaggagctac cagcagaggc
     3781 tgctgctggg gagctgaagg ctgctggccc cttgcctctg aggaaggttg gctggcacag
     3841 ggaaagttct agccagaggt ggggcctgac atgtcggtga cttgggctga cctgcctacg
     3901 acccccagct gccaagactg cccaagagtt gggccactcc actgttccac ctcgataatg
     3961 ggaggtcatt ccccacacaa gttgatgctg gggaattatt tctaaccctt tgtaccaaat
     4021 taagttacta atccccacct ggatttttct cccatgaggg taaagtcaag tgagactccg
     4081 tgttaaactc ctgggtttaa gggtctgtct ctcagcctcc tggatgcagg ggcttgtttg
     4141 aaaagctgtt ctggagcaag cctgtcccag gagaggaggg agcacacgtg tgactgctgc
     4201 ccttccctgg agggggcagc atctgtccct tgaaggcatg gcggggaggg aaggaacatg
     4261 atccccccag acactgttag atgcagtgtc ctgactccac atgccctctc cttaccccag
     4321 gggaccctgg ggctgatgac agggtgggct ctttgtcatt ccatctccct ctgctcaggc
     4381 aggattcgtg gaagatgtgg cagagacagc agtggtcctg cagcgatgct gggctgaggg
     4441 caggaaccgt gacagatgat ccagaacatc tgtcttcacg tttctgctct gttcaatctg
     4501 tcccacttcc ttcatagact ccttccctaa agggaagtct gtgatgggtc tttggtatga
     4561 atcaggctcc agcaaatggg gccaagtctt ggttcttccc tgaagaatca tatccccttt
     4621 gtcaagccat ctcctaaact actccccacc cagtctctcc ccccacccag cactcctagg
     4681 aaaggagccc tcaggaggct ctcagtatgc agcaagccca ggcactgcca gcatttcagg
     4741 gggccgagag agagggtgtc cctctagctc accactcgtg ggatcactgg ttctcccagg
     4801 ggcctgaccc ccaccagggc aagcatgcct gagctcttct ttactgccag ccttgaggag
     4861 agcagaagcc tcacacccct ttcaaagacg ctagagccct ccaagggtac tcttttggaa
     4921 atgaaatgta gcacaatctt agactgcgtt accaggagcc ctggcacgca accagggttc
     4981 ttgctccaca ccctgctgtc caggagatgc cgtgctcctc ccccgccggg gctccagagc
     5041 tcctgatacc tccggttccc catcttcagc ccagaaagca tcagggcttc aggaaagctg
     5101 ctcttccgct tctttgatta cttcctgcac tgtgcgggag cccgtgcgag caactgctgc
     5161 ctttgcttgg tggcggagac aggtggcgtg ttcttcaggg ccaggtggtc cagcagggtt
     5221 tccgcactgg ctgcaaggag ggggaaaaga agaggcctgc tgccctgccg actgctccct
     5281 ttctcttcct ctccccggag ttttcttctc cgatatcctg acacagaaag aggttctcta
     5341 aaatgctgct tcctatactg gattaccgtt cactgaatga tcaggaagga gataggaatg
     5401 tagactcatc ccttgccttc tccttcaagt ctgcttttca ctcaggtcag aagaaattgg
     5461 gtcaaaacaa aacaatcatg actgaagggc aggggaaccc cgcccgatcc agtgaggcct
     5521 gatgggggct ggataagcct agtctggctg ggaaagggtt attttgagag tgcctgagcg
     5581 tctcagagcg acgtcagtga tgccaaagag agcgacttgg cctcctcggg ccccagctct
     5641 gccagctgag ccgcacacat gcagctcagg tgtcagcatg cccgatggtg ggaccttgtt
     5701 ctctgacaaa gggcttaatc tttccatgta gcaaagcaac ttcccctccc ccagaccctg
     5761 agctcaggct tttgtgggcc cagcaaggct gtgcctgtga aggaaactgg cattcccgca
     5821 gaggcccaga ctggcttggg gaggatgctc gtcaaaaagc atgagtgtta ctgctctggg
     5881 aaaaccttcc caggctctga ttggaaactt ggccagtaag gacaggagcc ttcgccctcc
     5941 ctgggagctc acactgatgc caggaagggt ccttgggact gggttccaga gagcttggca
     6001 aagagaaatg ggccctggga attccaaagg caacagagca tccgccccaa tggtcagtgg
     6061 cctggacagc tggctacgga gaatcaaagg ctatcacata caggcaagac ttgtgcaaga
     6121 ctcctcactt ttctgggcct cagcttcctc atatgcaaaa ccagagcatt tgctagttac
     6181 tccacggttc cctccaggtt ttaagtctaa tctggagttg atgagggctg tgagcctggt
     6241 gcacccggca cctggctcca caggctggtt ccttccagac ctgggtgccc aagctgggtg
     6301 caggtcctca cccgtccatg cccagatgct gcttctgaca agaactctgg gaatcctaac
     6361 agactcttct tcttccacct cttccgggtt tgttgttgtt ttcttacgta atgagatcat
     6421 taagggttgt ctacaatgga ctttttccaa ggtgctgatg tgatgtcaca acctcagatg
     6481 catcctgcgt aggtcagtat ccccaccagc agatgaggct gggttggtcc tcatttctgc
     6541 ttctagaatg agacaatggg agaattttaa agggagatgc tctctgatgg gaggagagag
     6601 ggaacttatt tcccttcaaa gtattttgct tcttgaaaca aaaaatgact cttctccaga
     6661 atgtctttta ccagacacca tctcagcagg cagagtggct gctgctttct taggaaaagt
     6721 tggcctgatt attccatcca ctcctttaga atgtaaattc ataggaggca agaacccctt
     6781 ttttagaatt tctaaatgca tcctgcaaag agagagagca gatagggact gagaagcaca
     6841 ctgtttagat aagaagcaat tagcctttta tatctgtgct ctatacattt tctatgtgca
     6901 gcatctttcc aaactcgttg tggctcccag gtggcaggtg gatggatggg aaggactgcc
     6961 ggctgtttct tacaacactc ttgccaattc ccttgaggag aaaattcttc acatggcttc
     7021 tgcatgtaca gtatttgggc agcaaaaaat gattaaagtc cgttcgaaaa tgg
//
LOCUS       XM_032652314            6948 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X5, mRNA.
ACCESSION   XM_032652314
VERSION     XM_032652314.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6948
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6948
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             219..1145
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508205.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    639..1076
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 cccagctctg cggttctgag gaggacccct tccacagtct gcccaggctg gagccagttt
       61 tgttctgcct gttctcattt ttggctgtga aaacaacagt cacgcttact gaatatttac
      121 tccgtgcctg ataccgttcc aggcactttc acctgcacta atttaatcct tacaacagtc
      181 ctacgagggt tgcctgaggc cctgccgccc cgtggatcat gtttaacggg gagccagttc
      241 cagcctcagc tgcggcctcc aggaacgtgg tgcggagctc cagcatcagc ggcgaaatct
      301 gcggacccca gcaggctggg gacgggaccg ggaccaccac ggccaagaag cggcgcagca
      361 gcctcggggc caagatggtg gccatcgtgg gcctgaccca gtggagcagg ggcacactcc
      421 agctccccca ggctgaaggg gccaccaaga aactgcgcag caacatccgg cggagcacgg
      481 agacgggtgt tgccgtggag atgcggagtc gggtccctcg ccagggcagc cgggagtcca
      541 cggacgggag caccaacagc aatagctccg atggcacgtt catattcccc accacccggc
      601 ttggaggtga aagccagttc agcgatttcc tggatggcct gggaccagcc cagattgttg
      661 ggcgacagac gctggcaacg ccaccaatgg gggatgtgca cattgccatc atggaccgga
      721 gcagccagct ggaggtggaa gtgattgagg ctcggggcct gacccccaaa ccaggctcca
      781 aatccctccc agccacctat atcaaggttt acctacttga gaacggggcc tgcttggcca
      841 agaagaagac aaaggtggcc aagaagacct gtgatcccct gtaccagcag gctctgctct
      901 ttgacgaggg gccccagggc aaggtgctgc aggtgattgt ctggggagac tatggccgaa
      961 tggaccacaa gtgcttcatg ggcatggccc agatcatgct ggacgagctg gacctgagtg
     1021 ctgcggtcac cggctggtac aaactcttcc ccacgtcctc agtggcagac tctacgctcg
     1081 gctccctcac caggcgcctg tcccagtcct ccctggagag tgccacgagc ccctcaggct
     1141 cctaagggcc tcaggaagag gcctggatgc agtgtgggaa ggggtgctgc caccccccgt
     1201 ctcctcccct gtacatagtc ttcacgtctt tctggacccc ttgccttgct gcatgcctgt
     1261 tggctactgg gcctgtccca gctggcagtg gagactctag tatgtgtgcg tgtgtgtttg
     1321 tgtgtgtgtc tgtgtgtgac catgttagat ctgttcattt gtctgggtgt atttggtctt
     1381 agtgactata tgggctaaaa tccacgtctc tctgtgtctc gttgtaaaga aacccaaagg
     1441 agagttgcgt ggacgggact ccacttgagt ccaggggtgg aagtgggaga cgcagccatt
     1501 ggtccatccc acctggtcct aggctcaggg cagagcctgc gtgtccccgc ctgtgcctgt
     1561 tcttggtggt ccctgcttag ttttctgtct tgttctttgt tccacctctg cctctcccag
     1621 cgcctctgct cttttttgag aaatgtagcg tccactgcag ctggccacag cgaggcccct
     1681 ctgggaaccc tgacacccct cctcttcact gggcactccg gctgctcttc ccaccgaatg
     1741 catccacagc atgtagcatc tcacctagcg ccctggccag ggctccggga ggcagacgat
     1801 gccggggagc tgagggctta aagaccgctt tctccctcgg gctggcgcca cctccttcct
     1861 acaagtgaga ttgaaggagg tgtcagttcc cggggttgca ggccaggtac cttggaggaa
     1921 agtgctggta cctcccttag aactgttcac ctcctgtttc cctccaagcc tcctcacttg
     1981 cgacatgcca aaggagctct cccagcggac cccaggtggt gtggagtgga cggtcttgac
     2041 atgcaagagg ttggcctcat agggacgtta cctgccaaag tgggcagccc ctggcggcac
     2101 ctgtgtccat cccaggtccg gagagtggcc ctgtgcccct ccgggctcgt cctggagggg
     2161 cctggcttgt tgaggatgtg cccagggcag ggctgctggc aggaatgagg agggctgggg
     2221 ctgacttgct ctgagaagcc tgtccgacct ttggggatta gctgcatgaa gttgattatt
     2281 gggggctcta tttttttttt tttttttttt ttctcttttc cagaccaggg tccatgtctg
     2341 ggagctcaga ttcactgagg cttcagcctc ctggctccac ggacagcttg gctgtagact
     2401 ctagaccatc acggtcacca gctctgtata agcaatactc acccctctcg gccttcctgc
     2461 cccctgccct ctgccgctgc cctctggagg gtagcctggc ctgctctaga caccgcgcct
     2521 gcctctgctt tctttccacc cttgtctggt tggagcttcc caaagccact caaaccctga
     2581 cctgattgga cagctgggcc ctgggggtgg gcaccagggc ctggactgga ccttgtgaga
     2641 tgtctgctgg gaatcctgaa gtctggtctg ggagtgccca aatctgtccc tctccttcct
     2701 caggtctagc atgaaaggca agaggttgcc caggaggtgg acacagcagc ccttgggttc
     2761 acgtctggtg gggtggacag aggcagcagg agggtcaagg cctgggacgg gctcgcgctc
     2821 tgcctcttcc ccggaggggt caaggcctgg gacgggctcg cgctctgcct cttccccaga
     2881 tatcaccccc gagagctgca cggactctaa cccgcatacg tggggatccg tggagaggtg
     2941 cttggactcc atccataagc gaagccagcc gggcctgggg gtcgcttccg aggcaggaag
     3001 gtggagacag aggctgagac agagccatcc ccaccgaggg gtcctttctg gcaggaacca
     3061 cattaggctg aagccagggc ctggccacct ccctcctgtg aaaaccaggg ggagaagcca
     3121 ggtccccact ggtcctgccc acagacaaaa agtgggtgag ggcagtaagg acaagataag
     3181 ctcctgggct cctgactcct gctggaggct ccattcctgt atcatcatgg cgggaacgct
     3241 tatgtgtgtg gagagagaga cagctaggct gagttttctc tttctgcaga gattctctcc
     3301 tagggtcaga ctgggtaacg catgcatttc tcatgtttct aaaataaggc aaagggctct
     3361 atgctcttag atcctagggt ggggagtggg ggtgggaact cgcttgcaaa agcgtatttc
     3421 tgtgtcctgt gggtgatgca gagccgccag cctcagaatg gttgaaaatc cttgacgcct
     3481 ttggggtggt gggatgatca gagacccgca ggatggcgta gacatttgct gacgtggcac
     3541 cgagcggtga tacgcagacc gtgcggttac ccccagggaa tgggggtatc agtgcagggt
     3601 gtcaccctcg ttcctctaga ggcgcagcaa gacagaagga gctaccagca gaggctgctg
     3661 ctggggagct gaaggctgct ggccccttgc ctctgaggaa ggttggctgg cacagggaaa
     3721 gttctagcca gaggtggggc ctgacatgtc ggtgacttgg gctgacctgc ctacgacccc
     3781 cagctgccaa gactgcccaa gagttgggcc actccactgt tccacctcga taatgggagg
     3841 tcattcccca cacaagttga tgctggggaa ttatttctaa ccctttgtac caaattaagt
     3901 tactaatccc cacctggatt tttctcccat gagggtaaag tcaagtgaga ctccgtgtta
     3961 aactcctggg tttaagggtc tgtctctcag cctcctggat gcaggggctt gtttgaaaag
     4021 ctgttctgga gcaagcctgt cccaggagag gagggagcac acgtgtgact gctgcccttc
     4081 cctggagggg gcagcatctg tcccttgaag gcatggcggg gagggaagga acatgatccc
     4141 cccagacact gttagatgca gtgtcctgac tccacatgcc ctctccttac cccaggggac
     4201 cctggggctg atgacagggt gggctctttg tcattccatc tccctctgct caggcaggat
     4261 tcgtggaaga tgtggcagag acagcagtgg tcctgcagcg atgctgggct gagggcagga
     4321 accgtgacag atgatccaga acatctgtct tcacgtttct gctctgttca atctgtccca
     4381 cttccttcat agactccttc cctaaaggga agtctgtgat gggtctttgg tatgaatcag
     4441 gctccagcaa atggggccaa gtcttggttc ttccctgaag aatcatatcc cctttgtcaa
     4501 gccatctcct aaactactcc ccacccagtc tctcccccca cccagcactc ctaggaaagg
     4561 agccctcagg aggctctcag tatgcagcaa gcccaggcac tgccagcatt tcagggggcc
     4621 gagagagagg gtgtccctct agctcaccac tcgtgggatc actggttctc ccaggggcct
     4681 gacccccacc agggcaagca tgcctgagct cttctttact gccagccttg aggagagcag
     4741 aagcctcaca cccctttcaa agacgctaga gccctccaag ggtactcttt tggaaatgaa
     4801 atgtagcaca atcttagact gcgttaccag gagccctggc acgcaaccag ggttcttgct
     4861 ccacaccctg ctgtccagga gatgccgtgc tcctcccccg ccggggctcc agagctcctg
     4921 atacctccgg ttccccatct tcagcccaga aagcatcagg gcttcaggaa agctgctctt
     4981 ccgcttcttt gattacttcc tgcactgtgc gggagcccgt gcgagcaact gctgcctttg
     5041 cttggtggcg gagacaggtg gcgtgttctt cagggccagg tggtccagca gggtttccgc
     5101 actggctgca aggaggggga aaagaagagg cctgctgccc tgccgactgc tccctttctc
     5161 ttcctctccc cggagttttc ttctccgata tcctgacaca gaaagaggtt ctctaaaatg
     5221 ctgcttccta tactggatta ccgttcactg aatgatcagg aaggagatag gaatgtagac
     5281 tcatcccttg ccttctcctt caagtctgct tttcactcag gtcagaagaa attgggtcaa
     5341 aacaaaacaa tcatgactga agggcagggg aaccccgccc gatccagtga ggcctgatgg
     5401 gggctggata agcctagtct ggctgggaaa gggttatttt gagagtgcct gagcgtctca
     5461 gagcgacgtc agtgatgcca aagagagcga cttggcctcc tcgggcccca gctctgccag
     5521 ctgagccgca cacatgcagc tcaggtgtca gcatgcccga tggtgggacc ttgttctctg
     5581 acaaagggct taatctttcc atgtagcaaa gcaacttccc ctcccccaga ccctgagctc
     5641 aggcttttgt gggcccagca aggctgtgcc tgtgaaggaa actggcattc ccgcagaggc
     5701 ccagactggc ttggggagga tgctcgtcaa aaagcatgag tgttactgct ctgggaaaac
     5761 cttcccaggc tctgattgga aacttggcca gtaaggacag gagccttcgc cctccctggg
     5821 agctcacact gatgccagga agggtccttg ggactgggtt ccagagagct tggcaaagag
     5881 aaatgggccc tgggaattcc aaaggcaaca gagcatccgc cccaatggtc agtggcctgg
     5941 acagctggct acggagaatc aaaggctatc acatacaggc aagacttgtg caagactcct
     6001 cacttttctg ggcctcagct tcctcatatg caaaaccaga gcatttgcta gttactccac
     6061 ggttccctcc aggttttaag tctaatctgg agttgatgag ggctgtgagc ctggtgcacc
     6121 cggcacctgg ctccacaggc tggttccttc cagacctggg tgcccaagct gggtgcaggt
     6181 cctcacccgt ccatgcccag atgctgcttc tgacaagaac tctgggaatc ctaacagact
     6241 cttcttcttc cacctcttcc gggtttgttg ttgttttctt acgtaatgag atcattaagg
     6301 gttgtctaca atggactttt tccaaggtgc tgatgtgatg tcacaacctc agatgcatcc
     6361 tgcgtaggtc agtatcccca ccagcagatg aggctgggtt ggtcctcatt tctgcttcta
     6421 gaatgagaca atgggagaat tttaaaggga gatgctctct gatgggagga gagagggaac
     6481 ttatttccct tcaaagtatt ttgcttcttg aaacaaaaaa tgactcttct ccagaatgtc
     6541 ttttaccaga caccatctca gcaggcagag tggctgctgc tttcttagga aaagttggcc
     6601 tgattattcc atccactcct ttagaatgta aattcatagg aggcaagaac ccctttttta
     6661 gaatttctaa atgcatcctg caaagagaga gagcagatag ggactgagaa gcacactgtt
     6721 tagataagaa gcaattagcc ttttatatct gtgctctata cattttctat gtgcagcatc
     6781 tttccaaact cgttgtggct cccaggtggc aggtggatgg atgggaagga ctgccggctg
     6841 tttcttacaa cactcttgcc aattcccttg aggagaaaat tcttcacatg gcttctgcat
     6901 gtacagtatt tgggcagcaa aaaatgatta aagtccgttc gaaaatgg
//
LOCUS       XM_032652322            7065 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X6, mRNA.
ACCESSION   XM_032652322
VERSION     XM_032652322.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7065
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7065
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             336..1262
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508213.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    756..1193
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 cgcagcgcgc ctgggaccgg gccgcgcctt ccgccgggtc cgcggggcgg ggtcccggag
       61 cacctgcccc gccttgcgga gtcgcctcgg ccagcggaga cccctccgtg tctggacccc
      121 ggccccacct tcggcaggag gaccccttcc acagtctgcc caggctggag ccagttttgt
      181 tctgcctgtt ctcatttttg gctgtgaaaa caacagtcac gcttactgaa tatttactcc
      241 gtgcctgata ccgttccagg cactttcacc tgcactaatt taatccttac aacagtccta
      301 cgagggttgc ctgaggccct gccgccccgt ggatcatgtt taacggggag ccagttccag
      361 cctcagctgc ggcctccagg aacgtggtgc ggagctccag catcagcggc gaaatctgcg
      421 gaccccagca ggctggggac gggaccggga ccaccacggc caagaagcgg cgcagcagcc
      481 tcggggccaa gatggtggcc atcgtgggcc tgacccagtg gagcaggggc acactccagc
      541 tcccccaggc tgaaggggcc accaagaaac tgcgcagcaa catccggcgg agcacggaga
      601 cgggtgttgc cgtggagatg cggagtcggg tccctcgcca gggcagccgg gagtccacgg
      661 acgggagcac caacagcaat agctccgatg gcacgttcat attccccacc acccggcttg
      721 gaggtgaaag ccagttcagc gatttcctgg atggcctggg accagcccag attgttgggc
      781 gacagacgct ggcaacgcca ccaatggggg atgtgcacat tgccatcatg gaccggagca
      841 gccagctgga ggtggaagtg attgaggctc ggggcctgac ccccaaacca ggctccaaat
      901 ccctcccagc cacctatatc aaggtttacc tacttgagaa cggggcctgc ttggccaaga
      961 agaagacaaa ggtggccaag aagacctgtg atcccctgta ccagcaggct ctgctctttg
     1021 acgaggggcc ccagggcaag gtgctgcagg tgattgtctg gggagactat ggccgaatgg
     1081 accacaagtg cttcatgggc atggcccaga tcatgctgga cgagctggac ctgagtgctg
     1141 cggtcaccgg ctggtacaaa ctcttcccca cgtcctcagt ggcagactct acgctcggct
     1201 ccctcaccag gcgcctgtcc cagtcctccc tggagagtgc cacgagcccc tcaggctcct
     1261 aagggcctca ggaagaggcc tggatgcagt gtgggaaggg gtgctgccac cccccgtctc
     1321 ctcccctgta catagtcttc acgtctttct ggaccccttg ccttgctgca tgcctgttgg
     1381 ctactgggcc tgtcccagct ggcagtggag actctagtat gtgtgcgtgt gtgtttgtgt
     1441 gtgtgtctgt gtgtgaccat gttagatctg ttcatttgtc tgggtgtatt tggtcttagt
     1501 gactatatgg gctaaaatcc acgtctctct gtgtctcgtt gtaaagaaac ccaaaggaga
     1561 gttgcgtgga cgggactcca cttgagtcca ggggtggaag tgggagacgc agccattggt
     1621 ccatcccacc tggtcctagg ctcagggcag agcctgcgtg tccccgcctg tgcctgttct
     1681 tggtggtccc tgcttagttt tctgtcttgt tctttgttcc acctctgcct ctcccagcgc
     1741 ctctgctctt ttttgagaaa tgtagcgtcc actgcagctg gccacagcga ggcccctctg
     1801 ggaaccctga cacccctcct cttcactggg cactccggct gctcttccca ccgaatgcat
     1861 ccacagcatg tagcatctca cctagcgccc tggccagggc tccgggaggc agacgatgcc
     1921 ggggagctga gggcttaaag accgctttct ccctcgggct ggcgccacct ccttcctaca
     1981 agtgagattg aaggaggtgt cagttcccgg ggttgcaggc caggtacctt ggaggaaagt
     2041 gctggtacct cccttagaac tgttcacctc ctgtttccct ccaagcctcc tcacttgcga
     2101 catgccaaag gagctctccc agcggacccc aggtggtgtg gagtggacgg tcttgacatg
     2161 caagaggttg gcctcatagg gacgttacct gccaaagtgg gcagcccctg gcggcacctg
     2221 tgtccatccc aggtccggag agtggccctg tgcccctccg ggctcgtcct ggaggggcct
     2281 ggcttgttga ggatgtgccc agggcagggc tgctggcagg aatgaggagg gctggggctg
     2341 acttgctctg agaagcctgt ccgacctttg gggattagct gcatgaagtt gattattggg
     2401 ggctctattt tttttttttt tttttttttc tcttttccag accagggtcc atgtctggga
     2461 gctcagattc actgaggctt cagcctcctg gctccacgga cagcttggct gtagactcta
     2521 gaccatcacg gtcaccagct ctgtataagc aatactcacc cctctcggcc ttcctgcccc
     2581 ctgccctctg ccgctgccct ctggagggta gcctggcctg ctctagacac cgcgcctgcc
     2641 tctgctttct ttccaccctt gtctggttgg agcttcccaa agccactcaa accctgacct
     2701 gattggacag ctgggccctg ggggtgggca ccagggcctg gactggacct tgtgagatgt
     2761 ctgctgggaa tcctgaagtc tggtctggga gtgcccaaat ctgtccctct ccttcctcag
     2821 gtctagcatg aaaggcaaga ggttgcccag gaggtggaca cagcagccct tgggttcacg
     2881 tctggtgggg tggacagagg cagcaggagg gtcaaggcct gggacgggct cgcgctctgc
     2941 ctcttccccg gaggggtcaa ggcctgggac gggctcgcgc tctgcctctt ccccagatat
     3001 cacccccgag agctgcacgg actctaaccc gcatacgtgg ggatccgtgg agaggtgctt
     3061 ggactccatc cataagcgaa gccagccggg cctgggggtc gcttccgagg caggaaggtg
     3121 gagacagagg ctgagacaga gccatcccca ccgaggggtc ctttctggca ggaaccacat
     3181 taggctgaag ccagggcctg gccacctccc tcctgtgaaa accaggggga gaagccaggt
     3241 ccccactggt cctgcccaca gacaaaaagt gggtgagggc agtaaggaca agataagctc
     3301 ctgggctcct gactcctgct ggaggctcca ttcctgtatc atcatggcgg gaacgcttat
     3361 gtgtgtggag agagagacag ctaggctgag ttttctcttt ctgcagagat tctctcctag
     3421 ggtcagactg ggtaacgcat gcatttctca tgtttctaaa ataaggcaaa gggctctatg
     3481 ctcttagatc ctagggtggg gagtgggggt gggaactcgc ttgcaaaagc gtatttctgt
     3541 gtcctgtggg tgatgcagag ccgccagcct cagaatggtt gaaaatcctt gacgcctttg
     3601 gggtggtggg atgatcagag acccgcagga tggcgtagac atttgctgac gtggcaccga
     3661 gcggtgatac gcagaccgtg cggttacccc cagggaatgg gggtatcagt gcagggtgtc
     3721 accctcgttc ctctagaggc gcagcaagac agaaggagct accagcagag gctgctgctg
     3781 gggagctgaa ggctgctggc cccttgcctc tgaggaaggt tggctggcac agggaaagtt
     3841 ctagccagag gtggggcctg acatgtcggt gacttgggct gacctgccta cgacccccag
     3901 ctgccaagac tgcccaagag ttgggccact ccactgttcc acctcgataa tgggaggtca
     3961 ttccccacac aagttgatgc tggggaatta tttctaaccc tttgtaccaa attaagttac
     4021 taatccccac ctggattttt ctcccatgag ggtaaagtca agtgagactc cgtgttaaac
     4081 tcctgggttt aagggtctgt ctctcagcct cctggatgca ggggcttgtt tgaaaagctg
     4141 ttctggagca agcctgtccc aggagaggag ggagcacacg tgtgactgct gcccttccct
     4201 ggagggggca gcatctgtcc cttgaaggca tggcggggag ggaaggaaca tgatcccccc
     4261 agacactgtt agatgcagtg tcctgactcc acatgccctc tccttacccc aggggaccct
     4321 ggggctgatg acagggtggg ctctttgtca ttccatctcc ctctgctcag gcaggattcg
     4381 tggaagatgt ggcagagaca gcagtggtcc tgcagcgatg ctgggctgag ggcaggaacc
     4441 gtgacagatg atccagaaca tctgtcttca cgtttctgct ctgttcaatc tgtcccactt
     4501 ccttcataga ctccttccct aaagggaagt ctgtgatggg tctttggtat gaatcaggct
     4561 ccagcaaatg gggccaagtc ttggttcttc cctgaagaat catatcccct ttgtcaagcc
     4621 atctcctaaa ctactcccca cccagtctct ccccccaccc agcactccta ggaaaggagc
     4681 cctcaggagg ctctcagtat gcagcaagcc caggcactgc cagcatttca gggggccgag
     4741 agagagggtg tccctctagc tcaccactcg tgggatcact ggttctccca ggggcctgac
     4801 ccccaccagg gcaagcatgc ctgagctctt ctttactgcc agccttgagg agagcagaag
     4861 cctcacaccc ctttcaaaga cgctagagcc ctccaagggt actcttttgg aaatgaaatg
     4921 tagcacaatc ttagactgcg ttaccaggag ccctggcacg caaccagggt tcttgctcca
     4981 caccctgctg tccaggagat gccgtgctcc tcccccgccg gggctccaga gctcctgata
     5041 cctccggttc cccatcttca gcccagaaag catcagggct tcaggaaagc tgctcttccg
     5101 cttctttgat tacttcctgc actgtgcggg agcccgtgcg agcaactgct gcctttgctt
     5161 ggtggcggag acaggtggcg tgttcttcag ggccaggtgg tccagcaggg tttccgcact
     5221 ggctgcaagg agggggaaaa gaagaggcct gctgccctgc cgactgctcc ctttctcttc
     5281 ctctccccgg agttttcttc tccgatatcc tgacacagaa agaggttctc taaaatgctg
     5341 cttcctatac tggattaccg ttcactgaat gatcaggaag gagataggaa tgtagactca
     5401 tcccttgcct tctccttcaa gtctgctttt cactcaggtc agaagaaatt gggtcaaaac
     5461 aaaacaatca tgactgaagg gcaggggaac cccgcccgat ccagtgaggc ctgatggggg
     5521 ctggataagc ctagtctggc tgggaaaggg ttattttgag agtgcctgag cgtctcagag
     5581 cgacgtcagt gatgccaaag agagcgactt ggcctcctcg ggccccagct ctgccagctg
     5641 agccgcacac atgcagctca ggtgtcagca tgcccgatgg tgggaccttg ttctctgaca
     5701 aagggcttaa tctttccatg tagcaaagca acttcccctc ccccagaccc tgagctcagg
     5761 cttttgtggg cccagcaagg ctgtgcctgt gaaggaaact ggcattcccg cagaggccca
     5821 gactggcttg gggaggatgc tcgtcaaaaa gcatgagtgt tactgctctg ggaaaacctt
     5881 cccaggctct gattggaaac ttggccagta aggacaggag ccttcgccct ccctgggagc
     5941 tcacactgat gccaggaagg gtccttggga ctgggttcca gagagcttgg caaagagaaa
     6001 tgggccctgg gaattccaaa ggcaacagag catccgcccc aatggtcagt ggcctggaca
     6061 gctggctacg gagaatcaaa ggctatcaca tacaggcaag acttgtgcaa gactcctcac
     6121 ttttctgggc ctcagcttcc tcatatgcaa aaccagagca tttgctagtt actccacggt
     6181 tccctccagg ttttaagtct aatctggagt tgatgagggc tgtgagcctg gtgcacccgg
     6241 cacctggctc cacaggctgg ttccttccag acctgggtgc ccaagctggg tgcaggtcct
     6301 cacccgtcca tgcccagatg ctgcttctga caagaactct gggaatccta acagactctt
     6361 cttcttccac ctcttccggg tttgttgttg ttttcttacg taatgagatc attaagggtt
     6421 gtctacaatg gactttttcc aaggtgctga tgtgatgtca caacctcaga tgcatcctgc
     6481 gtaggtcagt atccccacca gcagatgagg ctgggttggt cctcatttct gcttctagaa
     6541 tgagacaatg ggagaatttt aaagggagat gctctctgat gggaggagag agggaactta
     6601 tttcccttca aagtattttg cttcttgaaa caaaaaatga ctcttctcca gaatgtcttt
     6661 taccagacac catctcagca ggcagagtgg ctgctgcttt cttaggaaaa gttggcctga
     6721 ttattccatc cactccttta gaatgtaaat tcataggagg caagaacccc ttttttagaa
     6781 tttctaaatg catcctgcaa agagagagag cagataggga ctgagaagca cactgtttag
     6841 ataagaagca attagccttt tatatctgtg ctctatacat tttctatgtg cagcatcttt
     6901 ccaaactcgt tgtggctccc aggtggcagg tggatggatg ggaaggactg ccggctgttt
     6961 cttacaacac tcttgccaat tcccttgagg agaaaattct tcacatggct tctgcatgta
     7021 cagtatttgg gcagcaaaaa atgattaaag tccgttcgaa aatgg
//
LOCUS       XM_032652333            7056 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X7, mRNA.
ACCESSION   XM_032652333
VERSION     XM_032652333.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7056
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7056
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             327..1253
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508224.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    747..1184
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 gcgcctggga ccgggccgcg ccttccgccg ggtccgcggg gcggggtccc ggagcacctg
       61 ccccgccttg cggagtcgcc tcggccagcg gagacccctc cgtgtctgga ccccggcccc
      121 accttcggga ggaccccttc cacagtctgc ccaggctgga gccagttttg ttctgcctgt
      181 tctcattttt ggctgtgaaa acaacagtca cgcttactga atatttactc cgtgcctgat
      241 accgttccag gcactttcac ctgcactaat ttaatcctta caacagtcct acgagggttg
      301 cctgaggccc tgccgccccg tggatcatgt ttaacgggga gccagttcca gcctcagctg
      361 cggcctccag gaacgtggtg cggagctcca gcatcagcgg cgaaatctgc ggaccccagc
      421 aggctgggga cgggaccggg accaccacgg ccaagaagcg gcgcagcagc ctcggggcca
      481 agatggtggc catcgtgggc ctgacccagt ggagcagggg cacactccag ctcccccagg
      541 ctgaaggggc caccaagaaa ctgcgcagca acatccggcg gagcacggag acgggtgttg
      601 ccgtggagat gcggagtcgg gtccctcgcc agggcagccg ggagtccacg gacgggagca
      661 ccaacagcaa tagctccgat ggcacgttca tattccccac cacccggctt ggaggtgaaa
      721 gccagttcag cgatttcctg gatggcctgg gaccagccca gattgttggg cgacagacgc
      781 tggcaacgcc accaatgggg gatgtgcaca ttgccatcat ggaccggagc agccagctgg
      841 aggtggaagt gattgaggct cggggcctga cccccaaacc aggctccaaa tccctcccag
      901 ccacctatat caaggtttac ctacttgaga acggggcctg cttggccaag aagaagacaa
      961 aggtggccaa gaagacctgt gatcccctgt accagcaggc tctgctcttt gacgaggggc
     1021 cccagggcaa ggtgctgcag gtgattgtct ggggagacta tggccgaatg gaccacaagt
     1081 gcttcatggg catggcccag atcatgctgg acgagctgga cctgagtgct gcggtcaccg
     1141 gctggtacaa actcttcccc acgtcctcag tggcagactc tacgctcggc tccctcacca
     1201 ggcgcctgtc ccagtcctcc ctggagagtg ccacgagccc ctcaggctcc taagggcctc
     1261 aggaagaggc ctggatgcag tgtgggaagg ggtgctgcca ccccccgtct cctcccctgt
     1321 acatagtctt cacgtctttc tggacccctt gccttgctgc atgcctgttg gctactgggc
     1381 ctgtcccagc tggcagtgga gactctagta tgtgtgcgtg tgtgtttgtg tgtgtgtctg
     1441 tgtgtgacca tgttagatct gttcatttgt ctgggtgtat ttggtcttag tgactatatg
     1501 ggctaaaatc cacgtctctc tgtgtctcgt tgtaaagaaa cccaaaggag agttgcgtgg
     1561 acgggactcc acttgagtcc aggggtggaa gtgggagacg cagccattgg tccatcccac
     1621 ctggtcctag gctcagggca gagcctgcgt gtccccgcct gtgcctgttc ttggtggtcc
     1681 ctgcttagtt ttctgtcttg ttctttgttc cacctctgcc tctcccagcg cctctgctct
     1741 tttttgagaa atgtagcgtc cactgcagct ggccacagcg aggcccctct gggaaccctg
     1801 acacccctcc tcttcactgg gcactccggc tgctcttccc accgaatgca tccacagcat
     1861 gtagcatctc acctagcgcc ctggccaggg ctccgggagg cagacgatgc cggggagctg
     1921 agggcttaaa gaccgctttc tccctcgggc tggcgccacc tccttcctac aagtgagatt
     1981 gaaggaggtg tcagttcccg gggttgcagg ccaggtacct tggaggaaag tgctggtacc
     2041 tcccttagaa ctgttcacct cctgtttccc tccaagcctc ctcacttgcg acatgccaaa
     2101 ggagctctcc cagcggaccc caggtggtgt ggagtggacg gtcttgacat gcaagaggtt
     2161 ggcctcatag ggacgttacc tgccaaagtg ggcagcccct ggcggcacct gtgtccatcc
     2221 caggtccgga gagtggccct gtgcccctcc gggctcgtcc tggaggggcc tggcttgttg
     2281 aggatgtgcc cagggcaggg ctgctggcag gaatgaggag ggctggggct gacttgctct
     2341 gagaagcctg tccgaccttt ggggattagc tgcatgaagt tgattattgg gggctctatt
     2401 tttttttttt tttttttttt ctcttttcca gaccagggtc catgtctggg agctcagatt
     2461 cactgaggct tcagcctcct ggctccacgg acagcttggc tgtagactct agaccatcac
     2521 ggtcaccagc tctgtataag caatactcac ccctctcggc cttcctgccc cctgccctct
     2581 gccgctgccc tctggagggt agcctggcct gctctagaca ccgcgcctgc ctctgctttc
     2641 tttccaccct tgtctggttg gagcttccca aagccactca aaccctgacc tgattggaca
     2701 gctgggccct gggggtgggc accagggcct ggactggacc ttgtgagatg tctgctggga
     2761 atcctgaagt ctggtctggg agtgcccaaa tctgtccctc tccttcctca ggtctagcat
     2821 gaaaggcaag aggttgccca ggaggtggac acagcagccc ttgggttcac gtctggtggg
     2881 gtggacagag gcagcaggag ggtcaaggcc tgggacgggc tcgcgctctg cctcttcccc
     2941 ggaggggtca aggcctggga cgggctcgcg ctctgcctct tccccagata tcacccccga
     3001 gagctgcacg gactctaacc cgcatacgtg gggatccgtg gagaggtgct tggactccat
     3061 ccataagcga agccagccgg gcctgggggt cgcttccgag gcaggaaggt ggagacagag
     3121 gctgagacag agccatcccc accgaggggt cctttctggc aggaaccaca ttaggctgaa
     3181 gccagggcct ggccacctcc ctcctgtgaa aaccaggggg agaagccagg tccccactgg
     3241 tcctgcccac agacaaaaag tgggtgaggg cagtaaggac aagataagct cctgggctcc
     3301 tgactcctgc tggaggctcc attcctgtat catcatggcg ggaacgctta tgtgtgtgga
     3361 gagagagaca gctaggctga gttttctctt tctgcagaga ttctctccta gggtcagact
     3421 gggtaacgca tgcatttctc atgtttctaa aataaggcaa agggctctat gctcttagat
     3481 cctagggtgg ggagtggggg tgggaactcg cttgcaaaag cgtatttctg tgtcctgtgg
     3541 gtgatgcaga gccgccagcc tcagaatggt tgaaaatcct tgacgccttt ggggtggtgg
     3601 gatgatcaga gacccgcagg atggcgtaga catttgctga cgtggcaccg agcggtgata
     3661 cgcagaccgt gcggttaccc ccagggaatg ggggtatcag tgcagggtgt caccctcgtt
     3721 cctctagagg cgcagcaaga cagaaggagc taccagcaga ggctgctgct ggggagctga
     3781 aggctgctgg ccccttgcct ctgaggaagg ttggctggca cagggaaagt tctagccaga
     3841 ggtggggcct gacatgtcgg tgacttgggc tgacctgcct acgaccccca gctgccaaga
     3901 ctgcccaaga gttgggccac tccactgttc cacctcgata atgggaggtc attccccaca
     3961 caagttgatg ctggggaatt atttctaacc ctttgtacca aattaagtta ctaatcccca
     4021 cctggatttt tctcccatga gggtaaagtc aagtgagact ccgtgttaaa ctcctgggtt
     4081 taagggtctg tctctcagcc tcctggatgc aggggcttgt ttgaaaagct gttctggagc
     4141 aagcctgtcc caggagagga gggagcacac gtgtgactgc tgcccttccc tggagggggc
     4201 agcatctgtc ccttgaaggc atggcgggga gggaaggaac atgatccccc cagacactgt
     4261 tagatgcagt gtcctgactc cacatgccct ctccttaccc caggggaccc tggggctgat
     4321 gacagggtgg gctctttgtc attccatctc cctctgctca ggcaggattc gtggaagatg
     4381 tggcagagac agcagtggtc ctgcagcgat gctgggctga gggcaggaac cgtgacagat
     4441 gatccagaac atctgtcttc acgtttctgc tctgttcaat ctgtcccact tccttcatag
     4501 actccttccc taaagggaag tctgtgatgg gtctttggta tgaatcaggc tccagcaaat
     4561 ggggccaagt cttggttctt ccctgaagaa tcatatcccc tttgtcaagc catctcctaa
     4621 actactcccc acccagtctc tccccccacc cagcactcct aggaaaggag ccctcaggag
     4681 gctctcagta tgcagcaagc ccaggcactg ccagcatttc agggggccga gagagagggt
     4741 gtccctctag ctcaccactc gtgggatcac tggttctccc aggggcctga cccccaccag
     4801 ggcaagcatg cctgagctct tctttactgc cagccttgag gagagcagaa gcctcacacc
     4861 cctttcaaag acgctagagc cctccaaggg tactcttttg gaaatgaaat gtagcacaat
     4921 cttagactgc gttaccagga gccctggcac gcaaccaggg ttcttgctcc acaccctgct
     4981 gtccaggaga tgccgtgctc ctcccccgcc ggggctccag agctcctgat acctccggtt
     5041 ccccatcttc agcccagaaa gcatcagggc ttcaggaaag ctgctcttcc gcttctttga
     5101 ttacttcctg cactgtgcgg gagcccgtgc gagcaactgc tgcctttgct tggtggcgga
     5161 gacaggtggc gtgttcttca gggccaggtg gtccagcagg gtttccgcac tggctgcaag
     5221 gagggggaaa agaagaggcc tgctgccctg ccgactgctc cctttctctt cctctccccg
     5281 gagttttctt ctccgatatc ctgacacaga aagaggttct ctaaaatgct gcttcctata
     5341 ctggattacc gttcactgaa tgatcaggaa ggagatagga atgtagactc atcccttgcc
     5401 ttctccttca agtctgcttt tcactcaggt cagaagaaat tgggtcaaaa caaaacaatc
     5461 atgactgaag ggcaggggaa ccccgcccga tccagtgagg cctgatgggg gctggataag
     5521 cctagtctgg ctgggaaagg gttattttga gagtgcctga gcgtctcaga gcgacgtcag
     5581 tgatgccaaa gagagcgact tggcctcctc gggccccagc tctgccagct gagccgcaca
     5641 catgcagctc aggtgtcagc atgcccgatg gtgggacctt gttctctgac aaagggctta
     5701 atctttccat gtagcaaagc aacttcccct cccccagacc ctgagctcag gcttttgtgg
     5761 gcccagcaag gctgtgcctg tgaaggaaac tggcattccc gcagaggccc agactggctt
     5821 ggggaggatg ctcgtcaaaa agcatgagtg ttactgctct gggaaaacct tcccaggctc
     5881 tgattggaaa cttggccagt aaggacagga gccttcgccc tccctgggag ctcacactga
     5941 tgccaggaag ggtccttggg actgggttcc agagagcttg gcaaagagaa atgggccctg
     6001 ggaattccaa aggcaacaga gcatccgccc caatggtcag tggcctggac agctggctac
     6061 ggagaatcaa aggctatcac atacaggcaa gacttgtgca agactcctca cttttctggg
     6121 cctcagcttc ctcatatgca aaaccagagc atttgctagt tactccacgg ttccctccag
     6181 gttttaagtc taatctggag ttgatgaggg ctgtgagcct ggtgcacccg gcacctggct
     6241 ccacaggctg gttccttcca gacctgggtg cccaagctgg gtgcaggtcc tcacccgtcc
     6301 atgcccagat gctgcttctg acaagaactc tgggaatcct aacagactct tcttcttcca
     6361 cctcttccgg gtttgttgtt gttttcttac gtaatgagat cattaagggt tgtctacaat
     6421 ggactttttc caaggtgctg atgtgatgtc acaacctcag atgcatcctg cgtaggtcag
     6481 tatccccacc agcagatgag gctgggttgg tcctcatttc tgcttctaga atgagacaat
     6541 gggagaattt taaagggaga tgctctctga tgggaggaga gagggaactt atttcccttc
     6601 aaagtatttt gcttcttgaa acaaaaaatg actcttctcc agaatgtctt ttaccagaca
     6661 ccatctcagc aggcagagtg gctgctgctt tcttaggaaa agttggcctg attattccat
     6721 ccactccttt agaatgtaaa ttcataggag gcaagaaccc cttttttaga atttctaaat
     6781 gcatcctgca aagagagaga gcagataggg actgagaagc acactgttta gataagaagc
     6841 aattagcctt ttatatctgt gctctataca ttttctatgt gcagcatctt tccaaactcg
     6901 ttgtggctcc caggtggcag gtggatggat gggaaggact gccggctgtt tcttacaaca
     6961 ctcttgccaa ttcccttgag gagaaaattc ttcacatggc ttctgcatgt acagtatttg
     7021 ggcagcaaaa aatgattaaa gtccgttcga aaatgg
//
LOCUS       XM_032652341            7043 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X8, mRNA.
ACCESSION   XM_032652341
VERSION     XM_032652341.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7043
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7043
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             314..1240
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508232.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    734..1171
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 ccgcagcgcg cctgggaccg ggccgcgcct tccgccgggt ccgcggggcg gggtcccgga
       61 gcacctgccc cgccttgcgg agtcgcctcg gccagcggag acccctccgt gtctggaccc
      121 cggccccacc ttcgggggag ggatgacttc tacgttggcc tcttactgac agtggagctg
      181 tttcctgcac tggtgttttg ctgacccaac aaaggagctg tgctgcctgg gctgtgtgtg
      241 aacggaggcc acgggttaga aacagttgtt ctctggttgg agggttgcct gaggccctgc
      301 cgccccgtgg atcatgttta acggggagcc agttccagcc tcagctgcgg cctccaggaa
      361 cgtggtgcgg agctccagca tcagcggcga aatctgcgga ccccagcagg ctggggacgg
      421 gaccgggacc accacggcca agaagcggcg cagcagcctc ggggccaaga tggtggccat
      481 cgtgggcctg acccagtgga gcaggggcac actccagctc ccccaggctg aaggggccac
      541 caagaaactg cgcagcaaca tccggcggag cacggagacg ggtgttgccg tggagatgcg
      601 gagtcgggtc cctcgccagg gcagccggga gtccacggac gggagcacca acagcaatag
      661 ctccgatggc acgttcatat tccccaccac ccggcttgga ggtgaaagcc agttcagcga
      721 tttcctggat ggcctgggac cagcccagat tgttgggcga cagacgctgg caacgccacc
      781 aatgggggat gtgcacattg ccatcatgga ccggagcagc cagctggagg tggaagtgat
      841 tgaggctcgg ggcctgaccc ccaaaccagg ctccaaatcc ctcccagcca cctatatcaa
      901 ggtttaccta cttgagaacg gggcctgctt ggccaagaag aagacaaagg tggccaagaa
      961 gacctgtgat cccctgtacc agcaggctct gctctttgac gaggggcccc agggcaaggt
     1021 gctgcaggtg attgtctggg gagactatgg ccgaatggac cacaagtgct tcatgggcat
     1081 ggcccagatc atgctggacg agctggacct gagtgctgcg gtcaccggct ggtacaaact
     1141 cttccccacg tcctcagtgg cagactctac gctcggctcc ctcaccaggc gcctgtccca
     1201 gtcctccctg gagagtgcca cgagcccctc aggctcctaa gggcctcagg aagaggcctg
     1261 gatgcagtgt gggaaggggt gctgccaccc cccgtctcct cccctgtaca tagtcttcac
     1321 gtctttctgg accccttgcc ttgctgcatg cctgttggct actgggcctg tcccagctgg
     1381 cagtggagac tctagtatgt gtgcgtgtgt gtttgtgtgt gtgtctgtgt gtgaccatgt
     1441 tagatctgtt catttgtctg ggtgtatttg gtcttagtga ctatatgggc taaaatccac
     1501 gtctctctgt gtctcgttgt aaagaaaccc aaaggagagt tgcgtggacg ggactccact
     1561 tgagtccagg ggtggaagtg ggagacgcag ccattggtcc atcccacctg gtcctaggct
     1621 cagggcagag cctgcgtgtc cccgcctgtg cctgttcttg gtggtccctg cttagttttc
     1681 tgtcttgttc tttgttccac ctctgcctct cccagcgcct ctgctctttt ttgagaaatg
     1741 tagcgtccac tgcagctggc cacagcgagg cccctctggg aaccctgaca cccctcctct
     1801 tcactgggca ctccggctgc tcttcccacc gaatgcatcc acagcatgta gcatctcacc
     1861 tagcgccctg gccagggctc cgggaggcag acgatgccgg ggagctgagg gcttaaagac
     1921 cgctttctcc ctcgggctgg cgccacctcc ttcctacaag tgagattgaa ggaggtgtca
     1981 gttcccgggg ttgcaggcca ggtaccttgg aggaaagtgc tggtacctcc cttagaactg
     2041 ttcacctcct gtttccctcc aagcctcctc acttgcgaca tgccaaagga gctctcccag
     2101 cggaccccag gtggtgtgga gtggacggtc ttgacatgca agaggttggc ctcataggga
     2161 cgttacctgc caaagtgggc agcccctggc ggcacctgtg tccatcccag gtccggagag
     2221 tggccctgtg cccctccggg ctcgtcctgg aggggcctgg cttgttgagg atgtgcccag
     2281 ggcagggctg ctggcaggaa tgaggagggc tggggctgac ttgctctgag aagcctgtcc
     2341 gacctttggg gattagctgc atgaagttga ttattggggg ctctattttt tttttttttt
     2401 tttttttctc ttttccagac cagggtccat gtctgggagc tcagattcac tgaggcttca
     2461 gcctcctggc tccacggaca gcttggctgt agactctaga ccatcacggt caccagctct
     2521 gtataagcaa tactcacccc tctcggcctt cctgccccct gccctctgcc gctgccctct
     2581 ggagggtagc ctggcctgct ctagacaccg cgcctgcctc tgctttcttt ccacccttgt
     2641 ctggttggag cttcccaaag ccactcaaac cctgacctga ttggacagct gggccctggg
     2701 ggtgggcacc agggcctgga ctggaccttg tgagatgtct gctgggaatc ctgaagtctg
     2761 gtctgggagt gcccaaatct gtccctctcc ttcctcaggt ctagcatgaa aggcaagagg
     2821 ttgcccagga ggtggacaca gcagcccttg ggttcacgtc tggtggggtg gacagaggca
     2881 gcaggagggt caaggcctgg gacgggctcg cgctctgcct cttccccgga ggggtcaagg
     2941 cctgggacgg gctcgcgctc tgcctcttcc ccagatatca cccccgagag ctgcacggac
     3001 tctaacccgc atacgtgggg atccgtggag aggtgcttgg actccatcca taagcgaagc
     3061 cagccgggcc tgggggtcgc ttccgaggca ggaaggtgga gacagaggct gagacagagc
     3121 catccccacc gaggggtcct ttctggcagg aaccacatta ggctgaagcc agggcctggc
     3181 cacctccctc ctgtgaaaac cagggggaga agccaggtcc ccactggtcc tgcccacaga
     3241 caaaaagtgg gtgagggcag taaggacaag ataagctcct gggctcctga ctcctgctgg
     3301 aggctccatt cctgtatcat catggcggga acgcttatgt gtgtggagag agagacagct
     3361 aggctgagtt ttctctttct gcagagattc tctcctaggg tcagactggg taacgcatgc
     3421 atttctcatg tttctaaaat aaggcaaagg gctctatgct cttagatcct agggtgggga
     3481 gtgggggtgg gaactcgctt gcaaaagcgt atttctgtgt cctgtgggtg atgcagagcc
     3541 gccagcctca gaatggttga aaatccttga cgcctttggg gtggtgggat gatcagagac
     3601 ccgcaggatg gcgtagacat ttgctgacgt ggcaccgagc ggtgatacgc agaccgtgcg
     3661 gttaccccca gggaatgggg gtatcagtgc agggtgtcac cctcgttcct ctagaggcgc
     3721 agcaagacag aaggagctac cagcagaggc tgctgctggg gagctgaagg ctgctggccc
     3781 cttgcctctg aggaaggttg gctggcacag ggaaagttct agccagaggt ggggcctgac
     3841 atgtcggtga cttgggctga cctgcctacg acccccagct gccaagactg cccaagagtt
     3901 gggccactcc actgttccac ctcgataatg ggaggtcatt ccccacacaa gttgatgctg
     3961 gggaattatt tctaaccctt tgtaccaaat taagttacta atccccacct ggatttttct
     4021 cccatgaggg taaagtcaag tgagactccg tgttaaactc ctgggtttaa gggtctgtct
     4081 ctcagcctcc tggatgcagg ggcttgtttg aaaagctgtt ctggagcaag cctgtcccag
     4141 gagaggaggg agcacacgtg tgactgctgc ccttccctgg agggggcagc atctgtccct
     4201 tgaaggcatg gcggggaggg aaggaacatg atccccccag acactgttag atgcagtgtc
     4261 ctgactccac atgccctctc cttaccccag gggaccctgg ggctgatgac agggtgggct
     4321 ctttgtcatt ccatctccct ctgctcaggc aggattcgtg gaagatgtgg cagagacagc
     4381 agtggtcctg cagcgatgct gggctgaggg caggaaccgt gacagatgat ccagaacatc
     4441 tgtcttcacg tttctgctct gttcaatctg tcccacttcc ttcatagact ccttccctaa
     4501 agggaagtct gtgatgggtc tttggtatga atcaggctcc agcaaatggg gccaagtctt
     4561 ggttcttccc tgaagaatca tatccccttt gtcaagccat ctcctaaact actccccacc
     4621 cagtctctcc ccccacccag cactcctagg aaaggagccc tcaggaggct ctcagtatgc
     4681 agcaagccca ggcactgcca gcatttcagg gggccgagag agagggtgtc cctctagctc
     4741 accactcgtg ggatcactgg ttctcccagg ggcctgaccc ccaccagggc aagcatgcct
     4801 gagctcttct ttactgccag ccttgaggag agcagaagcc tcacacccct ttcaaagacg
     4861 ctagagccct ccaagggtac tcttttggaa atgaaatgta gcacaatctt agactgcgtt
     4921 accaggagcc ctggcacgca accagggttc ttgctccaca ccctgctgtc caggagatgc
     4981 cgtgctcctc ccccgccggg gctccagagc tcctgatacc tccggttccc catcttcagc
     5041 ccagaaagca tcagggcttc aggaaagctg ctcttccgct tctttgatta cttcctgcac
     5101 tgtgcgggag cccgtgcgag caactgctgc ctttgcttgg tggcggagac aggtggcgtg
     5161 ttcttcaggg ccaggtggtc cagcagggtt tccgcactgg ctgcaaggag ggggaaaaga
     5221 agaggcctgc tgccctgccg actgctccct ttctcttcct ctccccggag ttttcttctc
     5281 cgatatcctg acacagaaag aggttctcta aaatgctgct tcctatactg gattaccgtt
     5341 cactgaatga tcaggaagga gataggaatg tagactcatc ccttgccttc tccttcaagt
     5401 ctgcttttca ctcaggtcag aagaaattgg gtcaaaacaa aacaatcatg actgaagggc
     5461 aggggaaccc cgcccgatcc agtgaggcct gatgggggct ggataagcct agtctggctg
     5521 ggaaagggtt attttgagag tgcctgagcg tctcagagcg acgtcagtga tgccaaagag
     5581 agcgacttgg cctcctcggg ccccagctct gccagctgag ccgcacacat gcagctcagg
     5641 tgtcagcatg cccgatggtg ggaccttgtt ctctgacaaa gggcttaatc tttccatgta
     5701 gcaaagcaac ttcccctccc ccagaccctg agctcaggct tttgtgggcc cagcaaggct
     5761 gtgcctgtga aggaaactgg cattcccgca gaggcccaga ctggcttggg gaggatgctc
     5821 gtcaaaaagc atgagtgtta ctgctctggg aaaaccttcc caggctctga ttggaaactt
     5881 ggccagtaag gacaggagcc ttcgccctcc ctgggagctc acactgatgc caggaagggt
     5941 ccttgggact gggttccaga gagcttggca aagagaaatg ggccctggga attccaaagg
     6001 caacagagca tccgccccaa tggtcagtgg cctggacagc tggctacgga gaatcaaagg
     6061 ctatcacata caggcaagac ttgtgcaaga ctcctcactt ttctgggcct cagcttcctc
     6121 atatgcaaaa ccagagcatt tgctagttac tccacggttc cctccaggtt ttaagtctaa
     6181 tctggagttg atgagggctg tgagcctggt gcacccggca cctggctcca caggctggtt
     6241 ccttccagac ctgggtgccc aagctgggtg caggtcctca cccgtccatg cccagatgct
     6301 gcttctgaca agaactctgg gaatcctaac agactcttct tcttccacct cttccgggtt
     6361 tgttgttgtt ttcttacgta atgagatcat taagggttgt ctacaatgga ctttttccaa
     6421 ggtgctgatg tgatgtcaca acctcagatg catcctgcgt aggtcagtat ccccaccagc
     6481 agatgaggct gggttggtcc tcatttctgc ttctagaatg agacaatggg agaattttaa
     6541 agggagatgc tctctgatgg gaggagagag ggaacttatt tcccttcaaa gtattttgct
     6601 tcttgaaaca aaaaatgact cttctccaga atgtctttta ccagacacca tctcagcagg
     6661 cagagtggct gctgctttct taggaaaagt tggcctgatt attccatcca ctcctttaga
     6721 atgtaaattc ataggaggca agaacccctt ttttagaatt tctaaatgca tcctgcaaag
     6781 agagagagca gatagggact gagaagcaca ctgtttagat aagaagcaat tagcctttta
     6841 tatctgtgct ctatacattt tctatgtgca gcatctttcc aaactcgttg tggctcccag
     6901 gtggcaggtg gatggatggg aaggactgcc ggctgtttct tacaacactc ttgccaattc
     6961 ccttgaggag aaaattcttc acatggcttc tgcatgtaca gtatttgggc agcaaaaaat
     7021 gattaaagtc cgttcgaaaa tgg
//
LOCUS       XM_032652352            6894 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X9, mRNA.
ACCESSION   XM_032652352
VERSION     XM_032652352.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6894
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6894
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             165..1091
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508243.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    585..1022
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 gcagcgcgcc tgggaccggg ccgcgccttc cgccgggtcc gcggggcggg gtcccggagc
       61 acctgccccg ccttgcggag tcgcctcggc cagcggagac ccctccgtgt ctggaccccg
      121 gccccacctt cggggttgcc tgaggccctg ccgccccgtg gatcatgttt aacggggagc
      181 cagttccagc ctcagctgcg gcctccagga acgtggtgcg gagctccagc atcagcggcg
      241 aaatctgcgg accccagcag gctggggacg ggaccgggac caccacggcc aagaagcggc
      301 gcagcagcct cggggccaag atggtggcca tcgtgggcct gacccagtgg agcaggggca
      361 cactccagct cccccaggct gaaggggcca ccaagaaact gcgcagcaac atccggcgga
      421 gcacggagac gggtgttgcc gtggagatgc ggagtcgggt ccctcgccag ggcagccggg
      481 agtccacgga cgggagcacc aacagcaata gctccgatgg cacgttcata ttccccacca
      541 cccggcttgg aggtgaaagc cagttcagcg atttcctgga tggcctggga ccagcccaga
      601 ttgttgggcg acagacgctg gcaacgccac caatggggga tgtgcacatt gccatcatgg
      661 accggagcag ccagctggag gtggaagtga ttgaggctcg gggcctgacc cccaaaccag
      721 gctccaaatc cctcccagcc acctatatca aggtttacct acttgagaac ggggcctgct
      781 tggccaagaa gaagacaaag gtggccaaga agacctgtga tcccctgtac cagcaggctc
      841 tgctctttga cgaggggccc cagggcaagg tgctgcaggt gattgtctgg ggagactatg
      901 gccgaatgga ccacaagtgc ttcatgggca tggcccagat catgctggac gagctggacc
      961 tgagtgctgc ggtcaccggc tggtacaaac tcttccccac gtcctcagtg gcagactcta
     1021 cgctcggctc cctcaccagg cgcctgtccc agtcctccct ggagagtgcc acgagcccct
     1081 caggctccta agggcctcag gaagaggcct ggatgcagtg tgggaagggg tgctgccacc
     1141 ccccgtctcc tcccctgtac atagtcttca cgtctttctg gaccccttgc cttgctgcat
     1201 gcctgttggc tactgggcct gtcccagctg gcagtggaga ctctagtatg tgtgcgtgtg
     1261 tgtttgtgtg tgtgtctgtg tgtgaccatg ttagatctgt tcatttgtct gggtgtattt
     1321 ggtcttagtg actatatggg ctaaaatcca cgtctctctg tgtctcgttg taaagaaacc
     1381 caaaggagag ttgcgtggac gggactccac ttgagtccag gggtggaagt gggagacgca
     1441 gccattggtc catcccacct ggtcctaggc tcagggcaga gcctgcgtgt ccccgcctgt
     1501 gcctgttctt ggtggtccct gcttagtttt ctgtcttgtt ctttgttcca cctctgcctc
     1561 tcccagcgcc tctgctcttt tttgagaaat gtagcgtcca ctgcagctgg ccacagcgag
     1621 gcccctctgg gaaccctgac acccctcctc ttcactgggc actccggctg ctcttcccac
     1681 cgaatgcatc cacagcatgt agcatctcac ctagcgccct ggccagggct ccgggaggca
     1741 gacgatgccg gggagctgag ggcttaaaga ccgctttctc cctcgggctg gcgccacctc
     1801 cttcctacaa gtgagattga aggaggtgtc agttcccggg gttgcaggcc aggtaccttg
     1861 gaggaaagtg ctggtacctc ccttagaact gttcacctcc tgtttccctc caagcctcct
     1921 cacttgcgac atgccaaagg agctctccca gcggacccca ggtggtgtgg agtggacggt
     1981 cttgacatgc aagaggttgg cctcataggg acgttacctg ccaaagtggg cagcccctgg
     2041 cggcacctgt gtccatccca ggtccggaga gtggccctgt gcccctccgg gctcgtcctg
     2101 gaggggcctg gcttgttgag gatgtgccca gggcagggct gctggcagga atgaggaggg
     2161 ctggggctga cttgctctga gaagcctgtc cgacctttgg ggattagctg catgaagttg
     2221 attattgggg gctctatttt tttttttttt ttttttttct cttttccaga ccagggtcca
     2281 tgtctgggag ctcagattca ctgaggcttc agcctcctgg ctccacggac agcttggctg
     2341 tagactctag accatcacgg tcaccagctc tgtataagca atactcaccc ctctcggcct
     2401 tcctgccccc tgccctctgc cgctgccctc tggagggtag cctggcctgc tctagacacc
     2461 gcgcctgcct ctgctttctt tccacccttg tctggttgga gcttcccaaa gccactcaaa
     2521 ccctgacctg attggacagc tgggccctgg gggtgggcac cagggcctgg actggacctt
     2581 gtgagatgtc tgctgggaat cctgaagtct ggtctgggag tgcccaaatc tgtccctctc
     2641 cttcctcagg tctagcatga aaggcaagag gttgcccagg aggtggacac agcagccctt
     2701 gggttcacgt ctggtggggt ggacagaggc agcaggaggg tcaaggcctg ggacgggctc
     2761 gcgctctgcc tcttccccgg aggggtcaag gcctgggacg ggctcgcgct ctgcctcttc
     2821 cccagatatc acccccgaga gctgcacgga ctctaacccg catacgtggg gatccgtgga
     2881 gaggtgcttg gactccatcc ataagcgaag ccagccgggc ctgggggtcg cttccgaggc
     2941 aggaaggtgg agacagaggc tgagacagag ccatccccac cgaggggtcc tttctggcag
     3001 gaaccacatt aggctgaagc cagggcctgg ccacctccct cctgtgaaaa ccagggggag
     3061 aagccaggtc cccactggtc ctgcccacag acaaaaagtg ggtgagggca gtaaggacaa
     3121 gataagctcc tgggctcctg actcctgctg gaggctccat tcctgtatca tcatggcggg
     3181 aacgcttatg tgtgtggaga gagagacagc taggctgagt tttctctttc tgcagagatt
     3241 ctctcctagg gtcagactgg gtaacgcatg catttctcat gtttctaaaa taaggcaaag
     3301 ggctctatgc tcttagatcc tagggtgggg agtgggggtg ggaactcgct tgcaaaagcg
     3361 tatttctgtg tcctgtgggt gatgcagagc cgccagcctc agaatggttg aaaatccttg
     3421 acgcctttgg ggtggtggga tgatcagaga cccgcaggat ggcgtagaca tttgctgacg
     3481 tggcaccgag cggtgatacg cagaccgtgc ggttaccccc agggaatggg ggtatcagtg
     3541 cagggtgtca ccctcgttcc tctagaggcg cagcaagaca gaaggagcta ccagcagagg
     3601 ctgctgctgg ggagctgaag gctgctggcc ccttgcctct gaggaaggtt ggctggcaca
     3661 gggaaagttc tagccagagg tggggcctga catgtcggtg acttgggctg acctgcctac
     3721 gacccccagc tgccaagact gcccaagagt tgggccactc cactgttcca cctcgataat
     3781 gggaggtcat tccccacaca agttgatgct ggggaattat ttctaaccct ttgtaccaaa
     3841 ttaagttact aatccccacc tggatttttc tcccatgagg gtaaagtcaa gtgagactcc
     3901 gtgttaaact cctgggttta agggtctgtc tctcagcctc ctggatgcag gggcttgttt
     3961 gaaaagctgt tctggagcaa gcctgtccca ggagaggagg gagcacacgt gtgactgctg
     4021 cccttccctg gagggggcag catctgtccc ttgaaggcat ggcggggagg gaaggaacat
     4081 gatcccccca gacactgtta gatgcagtgt cctgactcca catgccctct ccttacccca
     4141 ggggaccctg gggctgatga cagggtgggc tctttgtcat tccatctccc tctgctcagg
     4201 caggattcgt ggaagatgtg gcagagacag cagtggtcct gcagcgatgc tgggctgagg
     4261 gcaggaaccg tgacagatga tccagaacat ctgtcttcac gtttctgctc tgttcaatct
     4321 gtcccacttc cttcatagac tccttcccta aagggaagtc tgtgatgggt ctttggtatg
     4381 aatcaggctc cagcaaatgg ggccaagtct tggttcttcc ctgaagaatc atatcccctt
     4441 tgtcaagcca tctcctaaac tactccccac ccagtctctc cccccaccca gcactcctag
     4501 gaaaggagcc ctcaggaggc tctcagtatg cagcaagccc aggcactgcc agcatttcag
     4561 ggggccgaga gagagggtgt ccctctagct caccactcgt gggatcactg gttctcccag
     4621 gggcctgacc cccaccaggg caagcatgcc tgagctcttc tttactgcca gccttgagga
     4681 gagcagaagc ctcacacccc tttcaaagac gctagagccc tccaagggta ctcttttgga
     4741 aatgaaatgt agcacaatct tagactgcgt taccaggagc cctggcacgc aaccagggtt
     4801 cttgctccac accctgctgt ccaggagatg ccgtgctcct cccccgccgg ggctccagag
     4861 ctcctgatac ctccggttcc ccatcttcag cccagaaagc atcagggctt caggaaagct
     4921 gctcttccgc ttctttgatt acttcctgca ctgtgcggga gcccgtgcga gcaactgctg
     4981 cctttgcttg gtggcggaga caggtggcgt gttcttcagg gccaggtggt ccagcagggt
     5041 ttccgcactg gctgcaagga gggggaaaag aagaggcctg ctgccctgcc gactgctccc
     5101 tttctcttcc tctccccgga gttttcttct ccgatatcct gacacagaaa gaggttctct
     5161 aaaatgctgc ttcctatact ggattaccgt tcactgaatg atcaggaagg agataggaat
     5221 gtagactcat cccttgcctt ctccttcaag tctgcttttc actcaggtca gaagaaattg
     5281 ggtcaaaaca aaacaatcat gactgaaggg caggggaacc ccgcccgatc cagtgaggcc
     5341 tgatgggggc tggataagcc tagtctggct gggaaagggt tattttgaga gtgcctgagc
     5401 gtctcagagc gacgtcagtg atgccaaaga gagcgacttg gcctcctcgg gccccagctc
     5461 tgccagctga gccgcacaca tgcagctcag gtgtcagcat gcccgatggt gggaccttgt
     5521 tctctgacaa agggcttaat ctttccatgt agcaaagcaa cttcccctcc cccagaccct
     5581 gagctcaggc ttttgtgggc ccagcaaggc tgtgcctgtg aaggaaactg gcattcccgc
     5641 agaggcccag actggcttgg ggaggatgct cgtcaaaaag catgagtgtt actgctctgg
     5701 gaaaaccttc ccaggctctg attggaaact tggccagtaa ggacaggagc cttcgccctc
     5761 cctgggagct cacactgatg ccaggaaggg tccttgggac tgggttccag agagcttggc
     5821 aaagagaaat gggccctggg aattccaaag gcaacagagc atccgcccca atggtcagtg
     5881 gcctggacag ctggctacgg agaatcaaag gctatcacat acaggcaaga cttgtgcaag
     5941 actcctcact tttctgggcc tcagcttcct catatgcaaa accagagcat ttgctagtta
     6001 ctccacggtt ccctccaggt tttaagtcta atctggagtt gatgagggct gtgagcctgg
     6061 tgcacccggc acctggctcc acaggctggt tccttccaga cctgggtgcc caagctgggt
     6121 gcaggtcctc acccgtccat gcccagatgc tgcttctgac aagaactctg ggaatcctaa
     6181 cagactcttc ttcttccacc tcttccgggt ttgttgttgt tttcttacgt aatgagatca
     6241 ttaagggttg tctacaatgg actttttcca aggtgctgat gtgatgtcac aacctcagat
     6301 gcatcctgcg taggtcagta tccccaccag cagatgaggc tgggttggtc ctcatttctg
     6361 cttctagaat gagacaatgg gagaatttta aagggagatg ctctctgatg ggaggagaga
     6421 gggaacttat ttcccttcaa agtattttgc ttcttgaaac aaaaaatgac tcttctccag
     6481 aatgtctttt accagacacc atctcagcag gcagagtggc tgctgctttc ttaggaaaag
     6541 ttggcctgat tattccatcc actcctttag aatgtaaatt cataggaggc aagaacccct
     6601 tttttagaat ttctaaatgc atcctgcaaa gagagagagc agatagggac tgagaagcac
     6661 actgtttaga taagaagcaa ttagcctttt atatctgtgc tctatacatt ttctatgtgc
     6721 agcatctttc caaactcgtt gtggctccca ggtggcaggt ggatggatgg gaaggactgc
     6781 cggctgtttc ttacaacact cttgccaatt cccttgagga gaaaattctt cacatggctt
     6841 ctgcatgtac agtatttggg cagcaaaaaa tgattaaagt ccgttcgaaa atgg
//
LOCUS       XM_032652362            6926 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulating synaptic membrane exocytosis 3
            (RIMS3), transcript variant X10, mRNA.
ACCESSION   XM_032652362
VERSION     XM_032652362.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6926
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6926
                     /gene="RIMS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764079"
     CDS             197..1123
                     /gene="RIMS3"
                     /codon_start=1
                     /product="regulating synaptic membrane exocytosis protein
                     3"
                     /protein_id="XP_032508253.1"
                     /db_xref="GeneID:116764079"
                     /translation="MFNGEPVPASAAASRNVVRSSSISGEICGPQQAGDGTGTTTAKK
                     RRSSLGAKMVAIVGLTQWSRGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQ
                     GSRESTDGSTNSNSSDGTFIFPTTRLGGESQFSDFLDGLGPAQIVGRQTLATPPMGDV
                     HIAIMDRSSQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTC
                     DPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKL
                     FPTSSVADSTLGSLTRRLSQSSLESATSPSGS"
     misc_feature    617..1054
                     /gene="RIMS3"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
ORIGIN      
        1 gaccgggccg cgccttccgc cgggtccgcg gggcggggtc ccggagcacc tgccccgcct
       61 tgcggagtcg cctcggccag cggagacccc tccgtgtctg gaccccggcc ccaccttcgg
      121 gcactttcac ctgcactaat ttaatcctta caacagtcct acgagggttg cctgaggccc
      181 tgccgccccg tggatcatgt ttaacgggga gccagttcca gcctcagctg cggcctccag
      241 gaacgtggtg cggagctcca gcatcagcgg cgaaatctgc ggaccccagc aggctgggga
      301 cgggaccggg accaccacgg ccaagaagcg gcgcagcagc ctcggggcca agatggtggc
      361 catcgtgggc ctgacccagt ggagcagggg cacactccag ctcccccagg ctgaaggggc
      421 caccaagaaa ctgcgcagca acatccggcg gagcacggag acgggtgttg ccgtggagat
      481 gcggagtcgg gtccctcgcc agggcagccg ggagtccacg gacgggagca ccaacagcaa
      541 tagctccgat ggcacgttca tattccccac cacccggctt ggaggtgaaa gccagttcag
      601 cgatttcctg gatggcctgg gaccagccca gattgttggg cgacagacgc tggcaacgcc
      661 accaatgggg gatgtgcaca ttgccatcat ggaccggagc agccagctgg aggtggaagt
      721 gattgaggct cggggcctga cccccaaacc aggctccaaa tccctcccag ccacctatat
      781 caaggtttac ctacttgaga acggggcctg cttggccaag aagaagacaa aggtggccaa
      841 gaagacctgt gatcccctgt accagcaggc tctgctcttt gacgaggggc cccagggcaa
      901 ggtgctgcag gtgattgtct ggggagacta tggccgaatg gaccacaagt gcttcatggg
      961 catggcccag atcatgctgg acgagctgga cctgagtgct gcggtcaccg gctggtacaa
     1021 actcttcccc acgtcctcag tggcagactc tacgctcggc tccctcacca ggcgcctgtc
     1081 ccagtcctcc ctggagagtg ccacgagccc ctcaggctcc taagggcctc aggaagaggc
     1141 ctggatgcag tgtgggaagg ggtgctgcca ccccccgtct cctcccctgt acatagtctt
     1201 cacgtctttc tggacccctt gccttgctgc atgcctgttg gctactgggc ctgtcccagc
     1261 tggcagtgga gactctagta tgtgtgcgtg tgtgtttgtg tgtgtgtctg tgtgtgacca
     1321 tgttagatct gttcatttgt ctgggtgtat ttggtcttag tgactatatg ggctaaaatc
     1381 cacgtctctc tgtgtctcgt tgtaaagaaa cccaaaggag agttgcgtgg acgggactcc
     1441 acttgagtcc aggggtggaa gtgggagacg cagccattgg tccatcccac ctggtcctag
     1501 gctcagggca gagcctgcgt gtccccgcct gtgcctgttc ttggtggtcc ctgcttagtt
     1561 ttctgtcttg ttctttgttc cacctctgcc tctcccagcg cctctgctct tttttgagaa
     1621 atgtagcgtc cactgcagct ggccacagcg aggcccctct gggaaccctg acacccctcc
     1681 tcttcactgg gcactccggc tgctcttccc accgaatgca tccacagcat gtagcatctc
     1741 acctagcgcc ctggccaggg ctccgggagg cagacgatgc cggggagctg agggcttaaa
     1801 gaccgctttc tccctcgggc tggcgccacc tccttcctac aagtgagatt gaaggaggtg
     1861 tcagttcccg gggttgcagg ccaggtacct tggaggaaag tgctggtacc tcccttagaa
     1921 ctgttcacct cctgtttccc tccaagcctc ctcacttgcg acatgccaaa ggagctctcc
     1981 cagcggaccc caggtggtgt ggagtggacg gtcttgacat gcaagaggtt ggcctcatag
     2041 ggacgttacc tgccaaagtg ggcagcccct ggcggcacct gtgtccatcc caggtccgga
     2101 gagtggccct gtgcccctcc gggctcgtcc tggaggggcc tggcttgttg aggatgtgcc
     2161 cagggcaggg ctgctggcag gaatgaggag ggctggggct gacttgctct gagaagcctg
     2221 tccgaccttt ggggattagc tgcatgaagt tgattattgg gggctctatt tttttttttt
     2281 tttttttttt ctcttttcca gaccagggtc catgtctggg agctcagatt cactgaggct
     2341 tcagcctcct ggctccacgg acagcttggc tgtagactct agaccatcac ggtcaccagc
     2401 tctgtataag caatactcac ccctctcggc cttcctgccc cctgccctct gccgctgccc
     2461 tctggagggt agcctggcct gctctagaca ccgcgcctgc ctctgctttc tttccaccct
     2521 tgtctggttg gagcttccca aagccactca aaccctgacc tgattggaca gctgggccct
     2581 gggggtgggc accagggcct ggactggacc ttgtgagatg tctgctggga atcctgaagt
     2641 ctggtctggg agtgcccaaa tctgtccctc tccttcctca ggtctagcat gaaaggcaag
     2701 aggttgccca ggaggtggac acagcagccc ttgggttcac gtctggtggg gtggacagag
     2761 gcagcaggag ggtcaaggcc tgggacgggc tcgcgctctg cctcttcccc ggaggggtca
     2821 aggcctggga cgggctcgcg ctctgcctct tccccagata tcacccccga gagctgcacg
     2881 gactctaacc cgcatacgtg gggatccgtg gagaggtgct tggactccat ccataagcga
     2941 agccagccgg gcctgggggt cgcttccgag gcaggaaggt ggagacagag gctgagacag
     3001 agccatcccc accgaggggt cctttctggc aggaaccaca ttaggctgaa gccagggcct
     3061 ggccacctcc ctcctgtgaa aaccaggggg agaagccagg tccccactgg tcctgcccac
     3121 agacaaaaag tgggtgaggg cagtaaggac aagataagct cctgggctcc tgactcctgc
     3181 tggaggctcc attcctgtat catcatggcg ggaacgctta tgtgtgtgga gagagagaca
     3241 gctaggctga gttttctctt tctgcagaga ttctctccta gggtcagact gggtaacgca
     3301 tgcatttctc atgtttctaa aataaggcaa agggctctat gctcttagat cctagggtgg
     3361 ggagtggggg tgggaactcg cttgcaaaag cgtatttctg tgtcctgtgg gtgatgcaga
     3421 gccgccagcc tcagaatggt tgaaaatcct tgacgccttt ggggtggtgg gatgatcaga
     3481 gacccgcagg atggcgtaga catttgctga cgtggcaccg agcggtgata cgcagaccgt
     3541 gcggttaccc ccagggaatg ggggtatcag tgcagggtgt caccctcgtt cctctagagg
     3601 cgcagcaaga cagaaggagc taccagcaga ggctgctgct ggggagctga aggctgctgg
     3661 ccccttgcct ctgaggaagg ttggctggca cagggaaagt tctagccaga ggtggggcct
     3721 gacatgtcgg tgacttgggc tgacctgcct acgaccccca gctgccaaga ctgcccaaga
     3781 gttgggccac tccactgttc cacctcgata atgggaggtc attccccaca caagttgatg
     3841 ctggggaatt atttctaacc ctttgtacca aattaagtta ctaatcccca cctggatttt
     3901 tctcccatga gggtaaagtc aagtgagact ccgtgttaaa ctcctgggtt taagggtctg
     3961 tctctcagcc tcctggatgc aggggcttgt ttgaaaagct gttctggagc aagcctgtcc
     4021 caggagagga gggagcacac gtgtgactgc tgcccttccc tggagggggc agcatctgtc
     4081 ccttgaaggc atggcgggga gggaaggaac atgatccccc cagacactgt tagatgcagt
     4141 gtcctgactc cacatgccct ctccttaccc caggggaccc tggggctgat gacagggtgg
     4201 gctctttgtc attccatctc cctctgctca ggcaggattc gtggaagatg tggcagagac
     4261 agcagtggtc ctgcagcgat gctgggctga gggcaggaac cgtgacagat gatccagaac
     4321 atctgtcttc acgtttctgc tctgttcaat ctgtcccact tccttcatag actccttccc
     4381 taaagggaag tctgtgatgg gtctttggta tgaatcaggc tccagcaaat ggggccaagt
     4441 cttggttctt ccctgaagaa tcatatcccc tttgtcaagc catctcctaa actactcccc
     4501 acccagtctc tccccccacc cagcactcct aggaaaggag ccctcaggag gctctcagta
     4561 tgcagcaagc ccaggcactg ccagcatttc agggggccga gagagagggt gtccctctag
     4621 ctcaccactc gtgggatcac tggttctccc aggggcctga cccccaccag ggcaagcatg
     4681 cctgagctct tctttactgc cagccttgag gagagcagaa gcctcacacc cctttcaaag
     4741 acgctagagc cctccaaggg tactcttttg gaaatgaaat gtagcacaat cttagactgc
     4801 gttaccagga gccctggcac gcaaccaggg ttcttgctcc acaccctgct gtccaggaga
     4861 tgccgtgctc ctcccccgcc ggggctccag agctcctgat acctccggtt ccccatcttc
     4921 agcccagaaa gcatcagggc ttcaggaaag ctgctcttcc gcttctttga ttacttcctg
     4981 cactgtgcgg gagcccgtgc gagcaactgc tgcctttgct tggtggcgga gacaggtggc
     5041 gtgttcttca gggccaggtg gtccagcagg gtttccgcac tggctgcaag gagggggaaa
     5101 agaagaggcc tgctgccctg ccgactgctc cctttctctt cctctccccg gagttttctt
     5161 ctccgatatc ctgacacaga aagaggttct ctaaaatgct gcttcctata ctggattacc
     5221 gttcactgaa tgatcaggaa ggagatagga atgtagactc atcccttgcc ttctccttca
     5281 agtctgcttt tcactcaggt cagaagaaat tgggtcaaaa caaaacaatc atgactgaag
     5341 ggcaggggaa ccccgcccga tccagtgagg cctgatgggg gctggataag cctagtctgg
     5401 ctgggaaagg gttattttga gagtgcctga gcgtctcaga gcgacgtcag tgatgccaaa
     5461 gagagcgact tggcctcctc gggccccagc tctgccagct gagccgcaca catgcagctc
     5521 aggtgtcagc atgcccgatg gtgggacctt gttctctgac aaagggctta atctttccat
     5581 gtagcaaagc aacttcccct cccccagacc ctgagctcag gcttttgtgg gcccagcaag
     5641 gctgtgcctg tgaaggaaac tggcattccc gcagaggccc agactggctt ggggaggatg
     5701 ctcgtcaaaa agcatgagtg ttactgctct gggaaaacct tcccaggctc tgattggaaa
     5761 cttggccagt aaggacagga gccttcgccc tccctgggag ctcacactga tgccaggaag
     5821 ggtccttggg actgggttcc agagagcttg gcaaagagaa atgggccctg ggaattccaa
     5881 aggcaacaga gcatccgccc caatggtcag tggcctggac agctggctac ggagaatcaa
     5941 aggctatcac atacaggcaa gacttgtgca agactcctca cttttctggg cctcagcttc
     6001 ctcatatgca aaaccagagc atttgctagt tactccacgg ttccctccag gttttaagtc
     6061 taatctggag ttgatgaggg ctgtgagcct ggtgcacccg gcacctggct ccacaggctg
     6121 gttccttcca gacctgggtg cccaagctgg gtgcaggtcc tcacccgtcc atgcccagat
     6181 gctgcttctg acaagaactc tgggaatcct aacagactct tcttcttcca cctcttccgg
     6241 gtttgttgtt gttttcttac gtaatgagat cattaagggt tgtctacaat ggactttttc
     6301 caaggtgctg atgtgatgtc acaacctcag atgcatcctg cgtaggtcag tatccccacc
     6361 agcagatgag gctgggttgg tcctcatttc tgcttctaga atgagacaat gggagaattt
     6421 taaagggaga tgctctctga tgggaggaga gagggaactt atttcccttc aaagtatttt
     6481 gcttcttgaa acaaaaaatg actcttctcc agaatgtctt ttaccagaca ccatctcagc
     6541 aggcagagtg gctgctgctt tcttaggaaa agttggcctg attattccat ccactccttt
     6601 agaatgtaaa ttcataggag gcaagaaccc cttttttaga atttctaaat gcatcctgca
     6661 aagagagaga gcagataggg actgagaagc acactgttta gataagaagc aattagcctt
     6721 ttatatctgt gctctataca ttttctatgt gcagcatctt tccaaactcg ttgtggctcc
     6781 caggtggcag gtggatggat gggaaggact gccggctgtt tcttacaaca ctcttgccaa
     6841 ttcccttgag gagaaaattc ttcacatggc ttctgcatgt acagtatttg ggcagcaaaa
     6901 aatgattaaa gtccgttcga aaatgg
//
LOCUS       XM_032652375            1046 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus general transcription factor IIF subunit
            2-like (LOC116764109), mRNA.
ACCESSION   XM_032652375
VERSION     XM_032652375.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1046
                     /gene="LOC116764109"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764109"
     CDS             177..950
                     /gene="LOC116764109"
                     /codon_start=1
                     /product="general transcription factor IIF subunit 2-like"
                     /protein_id="XP_032508266.1"
                     /db_xref="GeneID:116764109"
                     /translation="MASRGSRPKPQNIPLSLEGIQQNQRMWLVKLPKYLSQQWSEASG
                     SGEVGKLQIAKNRGKSEISFILNKELTDIRGTDGQPAPVIAPREHQLVLQGVRGQVLT
                     VLTERAPDQLSLEGTVVHRGECRPALSENYMRLKRKQIEESSKPARTVQKLEKVVTTN
                     YKPVANHQYNTEYEKKKKENGKRVKADKDQVLALLFAAFEKHQYYNIKDLVGITMQPV
                     AYLKEILNEIGVQNVKGPHKNTWELKAEYRYYPAAAKSE"
     misc_feature    order(216..221,237..239,243..245,252..275,282..284,
                     291..293,300..302,315..341,357..359,468..497,510..512,
                     516..521,537..539)
                     /gene="LOC116764109"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:259828"
     misc_feature    237..920
                     /gene="LOC116764109"
                     /note="Transcription initiation factor IIF, beta subunit;
                     Region: TFIIF_beta; cl02122"
                     /db_xref="CDD:445677"
ORIGIN      
        1 cggggtcccg gagcacctgc cccgccttgc ggagtcgcct cggccagcgg agacccctcc
       61 gtgtctggac cccggcccca ccttcgggtt cctggactcc agcagctggt tctggtgtcc
      121 tgcttccctc ttcatcccta gctggcccac cctctgcacc ctcagctcag gtgcacatgg
      181 cctccagagg cagcagaccc aagccccaga acattccact cagcttggag ggaatccaac
      241 agaaccagcg gatgtggttg gtgaagcttc ctaaatacct gtcacagcag tggtctgaag
      301 cttctggaag cggtgaagta gggaagctgc agattgccaa aaatcgagga aagtctgaaa
      361 tctcatttat tttgaataag gaacttacag acattcgggg tacagatgga caacctgccc
      421 cggtcattgc tcccagggag catcagcttg tcttgcaggg ggtcagaggg caggtcctca
      481 cagtgctgac tgagcgtgca ccggatcagc tctccctgga aggaacggtg gtacatcggg
      541 gggaatgcag acctgctctg agcgaaaact acatgaggct gaagagaaag caaatagagg
      601 agtcttccaa acctgccaga accgtacaga aactggagaa ggtagtcacg accaattata
      661 aacctgttgc caatcatcag tacaacactg aatatgagaa gaaaaagaaa gaaaatggaa
      721 agagagtgaa ggctgataaa gaccaagttt tagccttgct atttgctgcc tttgagaaac
      781 accagtatta taacataaag gacttggttg gcatcactat gcaacctgtg gcgtacctga
      841 aggaaatctt gaatgaaatc ggtgttcaga acgtaaaagg gccccacaaa aacacgtggg
      901 agctaaaagc agagtaccgg tattatccgg cagcagctaa gagtgagtga gacagccctt
      961 tgtcaagaag cgtccatatg agcgtgacaa tcttccgacg ctaaaagtga tgtgaggctg
     1021 tgctattatt gctaagagat ggggcg
//
LOCUS       XM_032652388            2469 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuroblastoma breakpoint family member
            6-like protein (LOC116764116), mRNA.
ACCESSION   XM_032652388
VERSION     XM_032652388.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2469
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2469
                     /gene="LOC116764116"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 91% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764116"
     CDS             684..1646
                     /gene="LOC116764116"
                     /codon_start=1
                     /product="neuroblastoma breakpoint family member 6-like
                     protein"
                     /protein_id="XP_032508279.1"
                     /db_xref="GeneID:116764116"
                     /translation="MAVSAVSCAGPRVDSWPRYVCTGFGSTSSTISFSMAVSLTTFSG
                     QRSEMSILETNQYLRSQLEKSKQDFQDLTEKFLMSQATAYSLAKQLQKYKCEEYKDLI
                     ESVLEEEVLFEEGELAEKMRPAARLGRYDPLIQAQARELTHLRQKLQEGKGVCYFFMQ
                     HAKDTVKSFESLLRSTDVTYYQRQRFCELLAQGSQLAERLASKLTTGNHHDRKDEDGR
                     EPLAPRLSRGLQEEEVNEVLEDSLDERYLTHSSLHDSHQPPSSNAFVCDVQEATSAAD
                     VARCTSHFYRQVLESTSQLYNENRHQERKSEPSGSPESYSRGNN"
     misc_feature    1314..1505
                     /gene="LOC116764116"
                     /note="Olduvai domain; Region: Olduvai; pfam06758"
                     /db_xref="CDD:429104"
ORIGIN      
        1 gttttagggg aaagacccgg agtttcgttc agagccctgg ggccttcctt gaaagccttt
       61 tccacccagg ccgtccccct tcccacatcc gtcgtccttt atgatactgg agatcctggg
      121 tctcactctg ggagcctccc gtcccctgcc tccttttttg gaagacaaaa ttccaaaggt
      181 ttgcaccact cgaatgtttg ctttccagct atcggtcaag gtcctgaaag catctggacc
      241 acactcatca aaggagtaac tgaccaacag cagtcctctg acgtgcctga acttctgact
      301 tctgaattca ttcaactcag ttctctggca gctgggatgg agtcccctaa agagccctct
      361 agggaaactc gctagaggaa cgttacggaa cttaggcgtg gggaattctt agtagtcaag
      421 tctcagaggt gtcattggag caccctggcc tttgtacagg cacagctttg gattccagag
      481 cccaggtggg aatttgtagc cttgaggagg aactggatcc tagttgcagt tctggtccac
      541 accacgctcc caaaccacaa gggctctcag tgcagttggg agcggtggtg tccccaagtc
      601 caggtgtggt ggttgcagaa cgtgaactat tgggagtgtt atgagcttgc acccaacctt
      661 gaatttagaa catccgtagt ccaatggcag tatctgcggt ttcatgtgca ggaccccgtg
      721 ttgactcctg gccaaggtat gtgtgcacag gttttggctc tacttcatcc accataagct
      781 tcagcatggc agtatctctc accactttct ctggtcagag aagtgaaatg agcatcctgg
      841 aaaccaacca gtacttgcgc tcccagctgg aaaaaagcaa acaggacttt caagacctca
      901 cagagaaatt cctcatgtcc caagctactg cctactccct ggccaaacag ctgcagaaat
      961 acaaatgtga agagtacaaa gacctcatcg aatctgtgct ggaggaggaa gtgctgtttg
     1021 aggaggggga gctggcagag aagatgagac cggctgcaag gcttgggaga tatgatcccc
     1081 taattcaggc tcaggcccga gaactgaccc acttacgaca gaagctacag gaagggaaag
     1141 gtgtctgtta ttttttcatg cagcatgcaa aggacacagt caagtctttt gagagcctcc
     1201 tcaggagcac tgacgttacc tactaccaga gacagagatt ctgtgagcta ctggcccaag
     1261 gaagccagct ggcagagaga cttgccagca aactcaccac tggaaatcat catgatagga
     1321 aggatgaaga cggacgggaa ccactggcac ccaggctcag cagggggctc caggaggaag
     1381 aagtgaatga agtcctggag gactcactgg atgaaaggta tctgactcat tccagtctcc
     1441 acgactccca ccagcctccc agcagcaatg cctttgtgtg tgatgtgcag gaggcgacct
     1501 ctgctgcgga tgtagccaga tgcacttctc acttctacag gcaggtcttg gagtccactt
     1561 cccagctgta caatgaaaac agacatcagg aaagaaaatc agagccttct ggctcacctg
     1621 agtcatattc cagaggtaac aactaatgct ggaactatga gacgttctgt cttatttcaa
     1681 caaagcatag acacaaacat ttccccaatt gatgagaaaa acaacaaaac aagcaaaagt
     1741 ccaaatctga aaggaagagc aggatttcac agccactcca gacttctact ccaaatggat
     1801 agtttgatta cagaaatcac agcccttcag cctgcaaatg tgataactgc ctaagggaca
     1861 gcaataccta gattctcaga taatcttgag aagccctaac cctttttcct tcccaccccc
     1921 atcctgtgga taactggagt cagcagcagc tggaagaaaa tggcaaggat ttgggtgaag
     1981 aataagccag aatagtgtcg ctgcagacca ttcatgagct cttcagcaca tgtccttttt
     2041 ccttgaaggt tgggggttta taaagatcct agaatagagt ttattttata tacattctgt
     2101 tggctatcat ctttctgtgc aaatcaaaat tataaagctt tcttcagctt aaagcaggaa
     2161 actcaaactt taaagtgccc actgcattta taccccagag agatagaaac caggtctgag
     2221 tgcatcattt cattccaaaa ttaaatatta ttgtacacct gctattacaa agaaaatatt
     2281 cattgtgtct caccctctgg ggaccaagat actcagacaa aaagttctgc ccccacagtt
     2341 gggcatctgt aagcagagcc acggtctcgt acatatccac ctaacggggg acccaagggc
     2401 acagtgatag aatctctgcc agagaaggat cctgagagct tactgttcac tgttgtattt
     2461 ccgatacac
//
LOCUS       XM_032652400            2908 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA binding domain containing 6
            (ACBD6), transcript variant X1, mRNA.
ACCESSION   XM_032652400
VERSION     XM_032652400.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2908
                     /gene="ACBD6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 2 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764124"
     CDS             311..1159
                     /gene="ACBD6"
                     /codon_start=1
                     /product="acyl-CoA-binding domain-containing protein 6
                     isoform X1"
                     /protein_id="XP_032508291.1"
                     /db_xref="GeneID:116764124"
                     /translation="MASPFLPAGATTGDSGGELSSGDESVDMESLQSPETEASRRLTE
                     LFEKAAAHFRGLVQGASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKAL
                     GDSSPSRAMQEYIAVVKKLDPSWNPQSPEKKGKEANTVFGGPVVSSLYHEEIIREEDK
                     NIFDYCRENNIDHITKVFKSKNVDVNMKDEEGRALLHWACDRGHKELVTVLLQHRADI
                     NCQDNEGQTALHYAAACEFLDIVELLLQSGADPTVRDQDGCLPEEATGCRAVTLMLQQ
                     HTTGKV"
     misc_feature    440..664
                     /gene="ACBD6"
                     /note="Acyl CoA binding protein; Region: ACBP; pfam00887"
                     /db_xref="CDD:459982"
     misc_feature    order(458..460,467..472,476..478,485..490,494..496,
                     503..508,512..517,524..529,578..583,590..595,650..652)
                     /gene="ACBD6"
                     /note="acyl-CoA binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238248"
     misc_feature    order(470..472,515..517,524..529,593..595,650..652)
                     /gene="ACBD6"
                     /note="CoA binding site [chemical binding]; other site"
                     /db_xref="CDD:238248"
     misc_feature    <806..>1093
                     /gene="ACBD6"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(809..817,821..826,839..841,848..850,875..877,
                     881..883,887..889,899..904,911..919,923..928,938..940,
                     947..949,974..976,980..982,986..988,998..1003,1010..1018,
                     1022..1027,1037..1039,1046..1048,1073..1075)
                     /gene="ACBD6"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    881..976
                     /gene="ACBD6"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    980..1075
                     /gene="ACBD6"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 cttttctccc ggacttcctg ctgtgctgct cgcggacccc cgccgcgccg ctggagagac
       61 ctgagctatt cggagcgcgc tgttagcccg gggttaccgg aagaggccgg gcagcggggg
      121 agagctgcag agggtggtgg agccagccac gtacgcccgg ggagggcagg gggcgagagg
      181 gaggcagagc taagcgagga gcgcgagaaa gtgagcttgg gtccgacttg agctctggtt
      241 caagaccgag actggtgggc caggacccca agccggcgtc acaccccgtc tgtagaagac
      301 aggcggtcac atggcttcgc cattcctgcc tgcgggagcc actacgggcg acagcggcgg
      361 agagctgagc tcgggggacg agtccgtgga tatggaatct ctccagagcc cggagaccga
      421 ggcgtccagg aggctgacag agctgtttga gaaggctgcc gcgcacttcc gaggcctggt
      481 tcaaggggcc agcagggagc agctcttgta cctgtatgcc cggtacaagc aggtcaaagt
      541 tggaaattgc aatactccta aaccaagctt ctttgacttc gaaggaaagc aaaaatggga
      601 agcatggaaa gcacttggtg attcaagccc cagccgagca atgcaggagt atattgctgt
      661 agttaaaaaa ttagatccaa gttggaatcc tcagtcacca gagaagaaag gaaaagaagc
      721 aaatactgtt tttggtgggc cagttgttag ttctctgtat cacgaagaaa tcatcaggga
      781 agaagacaaa aacatatttg attactgcag agaaaacaac attgaccata taaccaaagt
      841 cttcaaatca aaaaacgtgg atgtgaatat gaaagatgaa gagggcagag ctctactcca
      901 ttgggcttgt gatcgaggac ataaggaact agtcacagtc ctgctacaac atagagctga
      961 tattaactgt caggacaatg aaggtcaaac agctctacat tatgctgctg cctgtgagtt
     1021 tttggacatt gttgagctgc tgctccagtc cggcgccgac cccacagtcc gagaccagga
     1081 tggctgcctg ccggaggagg cgacagggtg cagagcggtc actttgatgt tacagcagca
     1141 cacgactggc aaggtttaat caaaagactg gaaacccaca gtctgtaaca gcacagggct
     1201 tcagtggtga aagaaaactt caaaaataac acttcttttg ccacccctct ttggtataca
     1261 ctggctaata aaatcagttg tgagaaactg gggttttgaa gtctcagcaa ttccttctac
     1321 ttacatatat tccagcgagt accgtttggt gatgaacatg tgttctgtgc ataatacaat
     1381 ccaattccgc tgaacgtgct ctgaaattta tcactgttct agaggctggg agaggaggag
     1441 atgcatcgta tttcacaata ttaaacatga ctgctctttt aaaaaacata gagaagggaa
     1501 gtagaaccgg cagtactaca ctgacagtta gggaaagttc catgaaatcc caatatggtg
     1561 gagctcacag ggtcgcgtgg catttggtac agctaaaaca tctattcttt tgtcagacac
     1621 aattgggaag ataggaaaga agagggctgt taagaaagca aaagagagaa agggcagagt
     1681 tttgtcacgt aagggatata gaaatcagag gaacgaccag atttacggaa aaacctcaga
     1741 atcttggaca ttttaggatg gaaacacaga ttctagaaga atgcactggt taggtcagga
     1801 ttccttaaac tcacctttac aaaacaggga ggaacctccc tagggccctt ttaattgact
     1861 atcacgttcc tgttgcatat ggcagcagtc tctgtaactg gctcaggcct gaactgttag
     1921 gcctgtttgg gtctaatatg aaacagccat aatgccccag tacttaggtg tgactgaagt
     1981 tatttctgga gcacttctgt tttttattaa aaacatagac aagtacacca caggttttat
     2041 ttaaaggata gacaagtatg ccactggtga aactggctcc ctacatttcc ccctttaagc
     2101 ctcaagaact ccatctggga aattccttga catttcttat tatgtgagga aagtagatag
     2161 ttgtcatagg aagagaaatg aagaaacaag ttgagatgcc aagatgacca tttaaaagat
     2221 aatttttcta acgtgtcact cctaagatag caagtaataa acttgtttag tggagccctc
     2281 aacaatggac aagagtttca ttagctcaag ctaacctgtc cttctggaac aagcccctcc
     2341 agagcagaaa tgaggcatat tactaatgct gcttattttg tgatttttct aacctcttat
     2401 tttctgagat gtaaaccaaa accactcacc aaggttattc agtttttaaa tgacttctta
     2461 attatctgtg gaagtgatga gcacgttagt acatactgaa atgttactgt aattctagca
     2521 gagctttctc ttcgttatct gttcttttcc cacagtccca gctacatggc aacctactgt
     2581 tcagctaaat tctctcatgt tgcacattaa ttgaatgtgt tttaagtaac attattcatt
     2641 agttacagta aaagtgacca agatgttgca tgaagctttt aactgatatt actttgtgca
     2701 tttttcggac attagcaaat caaaaagtgt ttattcattt tcaatttaca gggtagttat
     2761 ctgagcaaga agctatcaag gaactccttt tttcatttct cttttgtaat tcgacctggg
     2821 tatgtattag acaagttttt aataagctgt tttgccacat ctaaaacagg ttgtttttaa
     2881 ataaagaatg taatttggtt tttattca
//
LOCUS       XM_032652408            5241 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA binding domain containing 6
            (ACBD6), transcript variant X2, mRNA.
ACCESSION   XM_032652408
VERSION     XM_032652408.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5241
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5241
                     /gene="ACBD6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 84% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764124"
     CDS             280..972
                     /gene="ACBD6"
                     /codon_start=1
                     /product="acyl-CoA-binding domain-containing protein 6
                     isoform X2"
                     /protein_id="XP_032508299.1"
                     /db_xref="GeneID:116764124"
                     /translation="MASPFLPAGATTGDSGGELSSGDESVDMESLQSPETEASRRLTE
                     LFEKAAAHFRGLVQGASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKAL
                     GDSSPSRAMQEYIAVVKKLDPSWNPQSPEKKGKEANTVFGGPVVSSLYHEEIIREEDK
                     NIFDYCRENNIDHITKVFKSKNVDVNMKDEEGRALLHWACDRGHKELVTVLLQHRADI
                     NCQLRIGNQVKR"
     misc_feature    409..633
                     /gene="ACBD6"
                     /note="Acyl CoA binding protein; Region: ACBP; pfam00887"
                     /db_xref="CDD:459982"
     misc_feature    order(427..429,436..441,445..447,454..459,463..465,
                     472..477,481..486,493..498,547..552,559..564,619..621)
                     /gene="ACBD6"
                     /note="acyl-CoA binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238248"
     misc_feature    order(439..441,484..486,493..498,562..564,619..621)
                     /gene="ACBD6"
                     /note="CoA binding site [chemical binding]; other site"
                     /db_xref="CDD:238248"
     misc_feature    <775..>957
                     /gene="ACBD6"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    850..942
                     /gene="ACBD6"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gcggaccccc gccgcgccgc tggagagacc tgagctattc ggagcgcgct gttagcccgg
       61 ggttaccgga agaggccggg cagcggggga gagctgcaga gggtggtgga gccagccacg
      121 tacgcccggg gagggcaggg ggcgagaggg aggcagagct aagcgaggag cgcgagaaag
      181 tgagcttggg tccgacttga gctctggttc aagaccgaga ctggtgggcc aggaccccaa
      241 gccggcgtca caccccgtct gtagaagaca ggcggtcaca tggcttcgcc attcctgcct
      301 gcgggagcca ctacgggcga cagcggcgga gagctgagct cgggggacga gtccgtggat
      361 atggaatctc tccagagccc ggagaccgag gcgtccagga ggctgacaga gctgtttgag
      421 aaggctgccg cgcacttccg aggcctggtt caaggggcca gcagggagca gctcttgtac
      481 ctgtatgccc ggtacaagca ggtcaaagtt ggaaattgca atactcctaa accaagcttc
      541 tttgacttcg aaggaaagca aaaatgggaa gcatggaaag cacttggtga ttcaagcccc
      601 agccgagcaa tgcaggagta tattgctgta gttaaaaaat tagatccaag ttggaatcct
      661 cagtcaccag agaagaaagg aaaagaagca aatactgttt ttggtgggcc agttgttagt
      721 tctctgtatc acgaagaaat catcagggaa gaagacaaaa acatatttga ttactgcaga
      781 gaaaacaaca ttgaccatat aaccaaagtc ttcaaatcaa aaaacgtgga tgtgaatatg
      841 aaagatgaag agggcagagc tctactccat tgggcttgtg atcgaggaca taaggaacta
      901 gtcacagtcc tgctacaaca tagagctgat attaactgtc agctaaggat aggtaatcaa
      961 gtcaaacgat aatgatccac atggtagcag gtatattctg ctgacctttc cctgtggtgc
     1021 agtgagtact gaagatggag tccagagaag actgcacaga ggaggtcagt gcagaagtgg
     1081 gagcagttaa tctctctcct gctctgatat ccgacagctg gtctcacatg ggcctggtgc
     1141 cagcagtgtc tttacaggct ttgtggcaga gattatttaa aggagattaa tccctctaaa
     1201 ccccttatat tttaattatt tctgtatgta tttataaaac ctgcagtctg cttgtttcag
     1261 ggcacagttg tccaagccct tgtctttaac ctggtttcca caatcagaca agtctatctc
     1321 tgttaccaca aaggataatt tgattttcct tgttactgaa attgttcggg gtttttttat
     1381 tcatttgttt tttggttggt tttggttttt ggtttctgtt tgatattatt aacattactg
     1441 tttgagagaa taactaaagt taatatgact tattttagaa tatctgctaa aatgctgttt
     1501 ttgtattaca tgataggaat ctaaagttgt agactgtagg atgtgaaaac ctctcggtat
     1561 tattaaaaaa acaatagatc tttcagggta ttatatttta aagattgatt agtggacatg
     1621 cctaccacgg tttccagcat tgtcagctaa ctttatgcct gaccagggca tccagaacaa
     1681 agatttctgc ctttccaatt tatgttattg aggactatca aaatttcctt cgaatttgag
     1741 tccacacagt atgaaagaac aaaaatcctt cattaaaaaa aaaatagcta tgaactatcc
     1801 tttgtggcat tggagcatca cgtctctagc caccatggaa gtgcttctgt ctttaacatg
     1861 caaggcagca tttctgcctc ttcatgcact ctattgcacc ttctttccaa tagctaggaa
     1921 aggaattctt tgggaatcat cctcctgaag gtcttccgcc ttctaaggaa cctctaatag
     1981 ggcctgtctt gatttagaat ttgttcatga tatttgtatc ttctaactac ttgttttaga
     2041 aagaaaacat atccgaatta agtacataca tagatacgta aataagatct gtgggagtag
     2101 cataaagatc ttttacgctc tacctatttt gtgaatgcgt tttaattggt gttagttgag
     2161 ctttttcctt ggtctttcca aaaaatgaat tctctttcct gtaactgtta tttttcaata
     2221 ataggtatta tggaagcata tattaccata acgaatcaga ttgtaatgta atagtataat
     2281 actgaataat ataaacaatc tattttgtat aatgttctca tatttgaact gatctaaact
     2341 tcctatatgt acaatgttaa tttttaaaac cataaaaata tgccaaattc tattaaaagc
     2401 gaaggaaatc cttagttaga aattcttatc tgacttgaag acaattagaa tatgcttcaa
     2461 agtttcaggt agaagaatgg catgcttagg acggtgcttg caaaagggat aggagaccag
     2521 ataaattatt agggaggctc ttgtaggaat tagtggatta gaaggttagg acctggttaa
     2581 ggtccattac tgtagagaaa gaaagaatca gatacagtac agaaggagaa ttcaatcaac
     2641 ttcacttgat gaaggacagt ataagaggta aagaaaaggg ataggttgaa agccataggc
     2701 aaaaaagttt tctggttttg atgtggctaa ctttaggggg ctatcctgaa attcatttaa
     2761 aatgtcctaa agaaaaagag aagccaaaag agaacatttg tacacacaga gatgtttttc
     2821 caaaacaata acagattcta agagaaggct gaatctttta ttttaaaatc tcagatactg
     2881 aaaagtctcc atataaatac gaagatatac agagaaaccc gtaaaatccc agtagtgttt
     2941 aagagcataa gctttgaagc cagagactta tttaagttct ggctctgcac cttataaatc
     3001 ctgtgacctc agacaaagtt acttaaccta cctaagcttc agtttcttca tttgtgaaat
     3061 gagataactt aatgcctact ttatgaggtt gttgcgtgga ttaataagag aacacataaa
     3121 ttgcttagtg cagtaaacag atttgctact accatcattg tttttactca caactgacta
     3181 aaatcagtct ttcttgctat attggcaggc tataggcaga aaggtataca aaatgaacta
     3241 tcattaaagt tgcccacaat actacatctt tgtctgtttt gctactcata caaggcatgt
     3301 atatctttat tatagaattc taattcatag atgacttgaa gtcttttgtt cttattttta
     3361 aatcaatacc agaagtaata cctttttatt tgactcttag ttgtacagcc atacacaaaa
     3421 gttattaaat tacagttggg aggtagaggt agagtagggg aataaactaa agcaaacatt
     3481 tattgagact cttaatacaa tcattcattc cccttaataa aatcagtcac ttatgccaga
     3541 aaaacagctc agaagagttt tatctttgaa tatgtggatt ttgctacctc tcttcccata
     3601 ggctgtgtcc ttttttattg ggtcccgaga aaacagctta tgtaatattt cttttggata
     3661 cccaggaaag aatttaggca gcaggactaa tgtggacagt aaaaactgaa gtcaaagtct
     3721 ttccatgttt ttaaagattt aaaaaattat tctaaaagag gatgaaagtg tgtggatggt
     3781 gataaaagcc accatttgat tatatttatc ggcaaatagt tctgaagaaa ttacagtatg
     3841 aaaaactgaa attgtagctt caggggaaat agagggttaa atctctgagc tgtagaagca
     3901 gattgtgttt tccttttgtg atctgggctg acaagacatc agtgttctat tcatctgttg
     3961 ggaattaggc tgttaatcca atcaatgact cttgagtgag ctgtggccta cctcccccac
     4021 tggggaacaa tcggatcaaa ctgcagattg tttaagagca cagtgctgtc ctcatgtcag
     4081 gtggaattct caaatgctcc ctggtgaatt ggggataggg aaagctgcct tggcccattt
     4141 atcctccttc ttaaataacc aggtgtctgc ttcatccata ggaaagcatt aggcaatagt
     4201 gacaacagga gtgcaataga aatccattaa ctttagctca caaaagtgtg ggtgaaagga
     4261 agcaatgctt ccaaacaccc cacaaaacag cttatataaa agtttattca tattttttcc
     4321 atactcctca aactctaaat cattttttct gtgggctttt tttttggttg ttgttaacaa
     4381 ttctatatca gtgaattttg ttaaccacca tgagctcttt ctgtgtattt atactgccct
     4441 gcctatattt ttataagtca tcagggtaga agtaaatttt aatatagatt atgggaacac
     4501 taattaaata aaattttaat tttaaaatat ctttctctga ggaatgctaa ttaaataaaa
     4561 ttttaatttt aaaatatcat agtctgagca tacataattt tgacatcttt tgcagcctag
     4621 caaaatttaa tttctaatta ctgatttaat agtccattaa gtacatttgg aaattattat
     4681 tgaactgatt agatagatgt tcagggttgc tgttaccttc tatgaaatgc tatctcaatt
     4741 tttcctttta aacagtaagg tgaaatgagc tatcataaag caaaatatcc aaagaggaat
     4801 tctcaaagaa ggtacttaca accccaatct tagtgaaagg cttaaaggat aattttattg
     4861 ctttctatct acattacgta ggagtgttcc aaaaagtatt tcctaaattt gccaatttta
     4921 tccattcatc ctgcgtttat agcacacacc ttttataccc aggactcttc ttaagcattg
     4981 gaactgggct tccctggtgg cgcagtggtt aagaatccgc ctgccaatgc aggggacacg
     5041 ggttcgagcc ctggtccggg aggattccgc atgccgcgga gcagctcagc ccgtgcacca
     5101 caactactga gcctgcgtgc cacaactact gaagcccacg tgtctagagc ccatgctctg
     5161 caacgggaga ggccaccgca atgagaagcc cacacacctc aacaagggag tagcccccgc
     5221 tcacagcaac gaagacccaa a
//
LOCUS       XM_032652419            1495 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 25 member 33
            (SLC25A33), mRNA.
ACCESSION   XM_032652419
VERSION     XM_032652419.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1495
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1495
                     /gene="SLC25A33"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764135"
     CDS             246..1211
                     /gene="SLC25A33"
                     /codon_start=1
                     /product="solute carrier family 25 member 33"
                     /protein_id="XP_032508310.1"
                     /db_xref="GeneID:116764135"
                     /translation="MATGSQQKENTLLHLFAGGCGGTVGAIFTCPLEVIKTRLQSSRL
                     ALRTVYYPQVHLGTISGAGMVRPTSVTPGLLQVLKSILEKEGPKSLFRGLGPNLVGVA
                     PSRAVYFACYSKAKEQFNGIFVPNSNTVHIFSAGSAAFVTNSLMNPIWMVKTRMQLER
                     KVRGSKQMNTLQCARYVYQTEGIRGFYRGLTASYAGISETIICFAIYENLKKYLKEAP
                     LASSTNGTEKNSTNFFGLMAAAALSKGCASCVAYPHEVIRTRLREEGTKYKSFVQTAR
                     LVFREEGYLAFYRGLFAQLIRQIPNTAIVLSTYELIVYLLEDHAQ"
     misc_feature    264..614
                     /gene="SLC25A33"
                     /note="Mitochondrial carrier protein; Region: Mito_carr;
                     pfam00153"
                     /db_xref="CDD:395101"
     misc_feature    618..893
                     /gene="SLC25A33"
                     /note="Mitochondrial carrier protein; Region: Mito_carr;
                     pfam00153"
                     /db_xref="CDD:395101"
     misc_feature    939..1202
                     /gene="SLC25A33"
                     /note="Mitochondrial carrier protein; Region: Mito_carr;
                     pfam00153"
                     /db_xref="CDD:395101"
ORIGIN      
        1 ctcccgctgg ccgttgggct cccgctgact gccgggctcg cgccgcagag gtaggtgagg
       61 cgcctgtggc cacgcggcag agggcgcggg ccgagggagc cagtcgtggg ggcgcgcgcg
      121 catggaggcg gtgccggcgg ccgcctgagg acaaccggga gagcggagag gccacctcgt
      181 gcatccgtca agccgcctcg agcccgcggc acccggcggc tgcgggccgc ggagccggcg
      241 cggccatggc gacgggcagt cagcagaagg agaacacgtt gctacacctc ttcgccggcg
      301 ggtgtggagg cacggttggt gctattttca cttgtccact agaagtcatt aagacgaggt
      361 tgcagtcttc aagattagct cttcggacag tctattatcc tcaggttcat ctggggacca
      421 tcagcggagc tgggatggtg agaccgacgt cagtgacgcc tggactctta caggttctga
      481 agtcgatctt ggagaaggaa ggaccaaagt cactttttag aggcttgggt ccaaatttgg
      541 ttggagttgc accatcaagg gctgtgtact ttgcatgcta ctccaaagcc aaagagcagt
      601 tcaatggcat tttcgtgcct aatagcaata ctgtgcacat tttctcagct ggctctgcag
      661 cttttgtcac aaattcctta atgaatccta tatggatggt taaaacccgg atgcagctag
      721 aacggaaagt gagaggctcc aagcagatga acacgctcca gtgtgctcgc tatgtttacc
      781 agacggaagg cattcgtggt ttctacaggg gactaactgc ctcgtacgct ggaatttcag
      841 aaaccatcat ctgttttgct atttatgaaa atttaaagaa gtatctgaaa gaagctccct
      901 tagcctcttc tacaaatggg actgagaaaa actccacaaa tttttttgga cttatggcag
      961 ctgctgctct ttccaagggg tgtgcttcct gtgtcgctta cccccatgaa gtcataagga
     1021 cacggctccg ggaggagggc accaagtaca agtcttttgt ccagactgct cggctggtct
     1081 tccgggaaga aggctacctg gccttttata gaggactctt tgcccagctc atccggcaga
     1141 taccaaatac tgccattgtg ttgtctacct atgagttaat tgtatacctg ttagaagacc
     1201 atgctcagta acagaccata aaattatggt ctagaagaat aaaactgaga aactctagag
     1261 aatttttttt ttttccattg atgtgtagaa tgtttgagac ggaaacagga aaggccgtag
     1321 actatctggc ttgtgtcacc tgttggacat ttccttttgg attcatgctt tctggaaggt
     1381 ttattttcat taacgttaac agttaattat aacttttggt tgtttttgtt ttgttttgtt
     1441 ttaacttaag agaattcagg ataaagcagc cagtaaatta aatcatggta tttaa
//
LOCUS       XM_032652432            2330 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf109 homolog
            (C1H1orf109), transcript variant X1, mRNA.
ACCESSION   XM_032652432
VERSION     XM_032652432.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2330
                     /gene="C1H1orf109"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764141"
     CDS             268..942
                     /gene="C1H1orf109"
                     /codon_start=1
                     /product="uncharacterized protein C1orf109 homolog isoform
                     X1"
                     /protein_id="XP_032508323.1"
                     /db_xref="GeneID:116764141"
                     /translation="MTQDQPLLAVQEALRKCFPVVEEQQGLWQSALRDCPPLLASLSN
                     LAEQLQAAQNLRFEDVPSLRDFPDLQERLRRKQLAAGDTLLDRLGERLAALLKVRDVV
                     SSHVEHVLQIYEQHADVISLDAVLQASATSPSVAEMLEWLQDIERHYRSLYLKRKYLL
                     SSIQWGDLGNIQALPKAWDRISEDEHPDLVRGTGFHLVLRVSSPPFFLCLTSLKACRD
                     ALMVPW"
     misc_feature    304..789
                     /gene="C1H1orf109"
                     /note="Casein Kinase 2 substrate; Region: CK2S; pfam15011"
                     /db_xref="CDD:464443"
ORIGIN      
        1 agactcggag gcaggctggg gccctaggaa ggttcttaaa ctttgattgc tttagcttta
       61 agttttcccg ctggtttagg gaaagcgacc cgcagcctca aggagaggag acaagcttct
      121 ggctctggac gcacggatag gcccggggaa cccgcagtct aaaacaggaa actgcccgaa
      181 cccggacgag cctcctccga gggatagtcc ggaaacgctt ctcgaggtgg gaaacaaggg
      241 tcctgccttc cgagagcccc tctaaagatg actcaagacc agcctttgct cgcggtgcag
      301 gaggccctga ggaagtgctt tcccgtggtg gaggagcagc agggcctgtg gcagagcgct
      361 ctcagggact gcccgcccct cctggcctcc ctcagcaacc tggcagagca gctgcaggcc
      421 gcacagaacc tacgatttga ggatgtgccg tcacttcggg acttcccaga cttacaggag
      481 cggctgaggc gcaagcagct ggcggctggt gacactctcc tggacaggct aggggagagg
      541 ctagccgccc tcctcaaggt gcgtgatgta gtcagcagcc acgtggaaca cgtgcttcag
      601 atctatgagc agcatgcaga cgtgatcagc ctcgatgctg tcctgcaggc ttcagctaca
      661 agcccctctg tggctgaaat gttggagtgg ttacaggata tcgagagaca ttatcgaagt
      721 ttgtacctga agaggaagta ccttctgtcc tcaatccagt ggggagactt gggaaacatc
      781 caagctttgc ccaaagcctg ggaccgaatt tcggaagacg aacacccaga ccttgtacga
      841 ggtactggtt ttcatttagt ccttcgtgtc tcctcccctc ctttctttct gtgtctcacc
      901 tctttgaaag catgtagaga tgccctcatg gtgccttggt agcttttaca aatctgatgt
      961 tttgtgtttt ctggagaggt ggtatgccat gtgttctctc tcctcctgtt ccaggtatcc
     1021 tgttgaacgt gtccttcttc ctggaagagt gaagaagccg tgtgtttatt gggagactag
     1081 ggggacgcag ttgaagaccg accttactgc gctctgatat ttctaaagaa atgtcagcat
     1141 tgcaactgga cttattggaa atgtcagtgc ctagagcctg aggattgtgc tggatgttgg
     1201 gtcttcttca tgccaggtcc tgggtgaggg cacatggtca cacctagccc tttcctaagg
     1261 ctcaggggag tggacagaga cagagaggat gcaggaaagg ccgtgcagaa gaacactggg
     1321 ggcagaagca acagccacag aagtagcaag gaaggaaagg acaggggtag agagtgccgc
     1381 tgcccccagc atcatccaaa gctctgagcc tcgttgacac caggtcctgg tttcgtgtat
     1441 ttgtgtcagt atccaactcc ttgatgaaaa aaagtggctt tgatgattta aagaagtaaa
     1501 gggtgggact tccctggtgg tccagtgctt aagaatccac cttccaatgc agggaacaca
     1561 ggtttgaacc ctggtcaggg aactaagatc tcacatgctg aggggcagct aagcctgcgt
     1621 gccacaacta gagaagcctg cgtgctgcaa cgaaagatcc cgtgtgccgc aactaagacc
     1681 tgacacaacc aaataaataa atagatattt ttaaaaaaat aaagaagtag aggtgatgtt
     1741 ggtggaaaac agtaactgtt ttcgaattgc agtagctcct tatcatcaaa acaattttag
     1801 tttccagagc ctaccaccag ggggaggtgg tgcagcatgg attattctga atgctttgtg
     1861 tttggagggg ttctcttgtt gctcttacta tctgagagta agtaactggg gatagtggga
     1921 ctcctcaaat aacagttttg ttttttgttt tttttaaacc aaagctggtg actgacttgc
     1981 tacagttctc tgatcttggg gtggctgcgt ggatgggaga acaccagctc acagtcaggt
     2041 gttcagggtt gggtttctga ggcccagtgc cttcatcagt gaaatggtcg tggtacttcc
     2101 cgacctgtca gcttcctggg ctggtgtaaa aatctgggtc attagatgta aagaggctta
     2161 ataaagaata tagatatttt tcaaagtgaa aatgactttt ttcgtattac aaaagtgata
     2221 tatgcttttt aaaaaacagt agagggcttc cctggtggcg cagtggttga gagtccgcct
     2281 gccgatgtag gggacgtggg ttcgtgtcct ggtccgggaa gatcccacat
//
LOCUS       XM_032652439            3470 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf109 homolog
            (C1H1orf109), transcript variant X2, mRNA.
ACCESSION   XM_032652439
VERSION     XM_032652439.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3470
                     /gene="C1H1orf109"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764141"
     CDS             292..903
                     /gene="C1H1orf109"
                     /codon_start=1
                     /product="uncharacterized protein C1orf109 homolog isoform
                     X2"
                     /protein_id="XP_032508330.1"
                     /db_xref="GeneID:116764141"
                     /translation="MTQDQPLLAVQEALRKCFPVVEEQQGLWQSALRDCPPLLASLSN
                     LAEQLQAAQNLRFEDVPSLRDFPDLQERLRRKQLAAGDTLLDRLGERLAALLKVRDVV
                     SSHVEHVLQIYEQHADVISLDAVLQASATSPSVAEMLEWLQDIERHYRSLYLKRKYLL
                     SSIQWGDLGNIQALPKAWDRISEDEHPDLVRGILLNVSFFLEE"
     misc_feature    328..813
                     /gene="C1H1orf109"
                     /note="Casein Kinase 2 substrate; Region: CK2S; pfam15011"
                     /db_xref="CDD:464443"
ORIGIN      
        1 agccatgttg gggcatgcgt agagagactc ggaggcaggc tggggcccta ggaaggttct
       61 taaactttga ttgctttagc tttaagtttt cccgctggtt tagggaaagc gacccgcagc
      121 ctcaaggaga ggagacaagc ttctggctct ggacgcacgg ataggcccgg ggaacccgca
      181 gtctaaaaca ggaaactgcc cgaacccgga cgagcctcct ccgagggata gtccggaaac
      241 gcttctcgag gtgggaaaca agggtcctgc cttccgagag cccctctaaa gatgactcaa
      301 gaccagcctt tgctcgcggt gcaggaggcc ctgaggaagt gctttcccgt ggtggaggag
      361 cagcagggcc tgtggcagag cgctctcagg gactgcccgc ccctcctggc ctccctcagc
      421 aacctggcag agcagctgca ggccgcacag aacctacgat ttgaggatgt gccgtcactt
      481 cgggacttcc cagacttaca ggagcggctg aggcgcaagc agctggcggc tggtgacact
      541 ctcctggaca ggctagggga gaggctagcc gccctcctca aggtgcgtga tgtagtcagc
      601 agccacgtgg aacacgtgct tcagatctat gagcagcatg cagacgtgat cagcctcgat
      661 gctgtcctgc aggcttcagc tacaagcccc tctgtggctg aaatgttgga gtggttacag
      721 gatatcgaga gacattatcg aagtttgtac ctgaagagga agtaccttct gtcctcaatc
      781 cagtggggag acttgggaaa catccaagct ttgcccaaag cctgggaccg aatttcggaa
      841 gacgaacacc cagaccttgt acgaggtatc ctgttgaacg tgtccttctt cctggaagag
      901 tgaagaagcc gtgtgtttat tgggagacta gggggacgca gttgaagacc gaccttactg
      961 cgctctgata tttctaaaga aatgtcagca ttgcaactgg acttattgga aatgtcagtg
     1021 cctagagcct gaggattgtg ctggatgttg ggtcttcttc atgccaggtc ctgggtgagg
     1081 gcacatggtc acacctagcc ctttcctaag gctcagggga gtggacagag acagagagga
     1141 tgcaggaaag gccgtgcaga agaacactgg gggcagaagc aacagccaca gaagtagcaa
     1201 ggaaggaaag gacaggggta gagagtgccg ctgcccccag catcatccaa agctctgagc
     1261 ctcgttgaca ccaggtcctg gtttcgtgta tttgtgtcag tatccaactc cttgatgaaa
     1321 aaaagtggct ttgatgattt aaagaagtaa agggtgggac ttccctggtg gtccagtgct
     1381 taagaatcca ccttccaatg cagggaacac aggtttgaac cctggtcagg gaactaagat
     1441 ctcacatgct gaggggcagc taagcctgcg tgccacaact agagaagcct gcgtgctgca
     1501 acgaaagatc ccgtgtgccg caactaagac ctgacacaac caaataaata aatagatatt
     1561 tttaaaaaaa taaagaagta gaggtgatgt tggtggaaaa cagtaactgt tttcgaattg
     1621 cagtagctcc ttatcatcaa aacaatttta gtttccagag cctaccacca gggggaggtg
     1681 gtgcagcatg gattattctg aatgctttgt gtttggaggg gttctcttgt tgctcttact
     1741 atctgagagt aagtaactgg ggatagtggg actcctcaaa taacagtttt gttttttgtt
     1801 ttttttaaac caaagctggt gactgacttg ctacagttct ctgatcttgg ggtggctgcg
     1861 tggatgggag aacaccagct cacagtcagg tgttcagggt tgggtttctg aggcccagtg
     1921 ccttcatcag tgaaatggtc gtggtacttc ccgacctgtc agcttcctgg gctggtgtaa
     1981 aaatctgggt cattagatgt aaagaggctt aataaagaat atagatattt ttcaaagtga
     2041 aaatgacttt tttcgtatta caaaagtgat atatgctttt taaaaaacag tagagggctt
     2101 ccctggtggc gcagtggttg agagtccgcc tgccgatgta ggggacgtgg gttcgtgtcc
     2161 tggtccggga agatcccaca tgctgcggag cgactgggcc cgtgagccat ggctgctgag
     2221 cctgcacgtc cggagcctgt gctccgcaac gggagaagcc acaacagtga gaggcccgcg
     2281 tacggcaaaa aaacagaaaa attgtagaaa acatttaaaa tgcagaaaaa tataaaacaa
     2341 gctccaccag agatattttg ttaagtatct ttttagtgtc catattcaca agttttttta
     2401 acaaaacaat tagggtgtta ttgataaata ttgttgttta aattatcttt taaaaaaatc
     2461 ttaatatagt ttggccagtt tttcatatct gtgaatctag ctcaacacaa ttatatacca
     2521 ttttatgaat gtattataat gttatatttt acatgtattc ttttaagtca tcatgttttt
     2581 ctacctgtaa ggataataca ttctggctgt gaaagattga agtattacag aaagtgaaaa
     2641 atgcacaatg tccacctacc agatatgtaa tcatttttaa taatgtggtg tatattcttc
     2701 caggaatttt tttttcttcc agaaattaaa aaaaaatcta ttctatcaca tatataataa
     2761 ttgtaaataa cttaactcaa gatatttggt atcaggtctt atgatgtgct gtgggtacag
     2821 aggtgaagga gagcactaaa aagatttata gttcaaccag ggaaagattt aaaccagtgt
     2881 ttctcaagtt tgaaaatgta tgtaaatcac tagtatctgg ttaaaattta gatttccatt
     2941 ctgtaggtcc tggggtgggg ccctggactc tgcatttcta acgaggtccc aggtgatgct
     3001 gatggtccaa ggaccagact ttaagtgaag agatttaaac ggtaatataa taatgctgta
     3061 tttgagatca aaacagaatt ccatgagaga atagaggtga cagccaactg cttgtgggac
     3121 tacttcgtgg tgactgtgac atctgagtca ggccttgagg ctcagaaagg agtgcagggt
     3181 gctgcatgta caggggcagt ctaagcaaag gcagtatttg agaaagaatg gaagctgata
     3241 cctcctggaa gtgtgtgggc atcgtgcttg tggcttgtac cccctagaac tggaagcatt
     3301 aacagttgac tatagcaagt cactggagtt cacaggggga cagaagagtg gcaggaaatg
     3361 ggtctgtaaa ggtgaactgg aatgaatttg tgaatgccat gatcaagagt atgtattttg
     3421 caaatgggag ttgcttgttt gtttgtgtgt gtgtgtgtgt gtgtgtgtgt
//
LOCUS       XR_004352737            2369 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf109 homolog
            (C1H1orf109), transcript variant X3, misc_RNA.
ACCESSION   XR_004352737
VERSION     XR_004352737.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2369
                     /gene="C1H1orf109"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764141"
     misc_RNA        1..2369
                     /gene="C1H1orf109"
                     /product="chromosome 1 C1orf109 homolog, transcript
                     variant X3"
                     /db_xref="GeneID:116764141"
ORIGIN      
        1 ggggcatgcg tagagagact cggaggcagg ctggggccct aggaaggttc ttaaactttg
       61 attgctttag ctttaagttt tcccgctggt ttagggaaag cgacccgcag cctcaaggag
      121 aggagacaag cttctggctc tggacgcacg gataggcccg gggaacccgc agtctaaaac
      181 aggaaactgc ccgaacccgg acgagcctcc tccgagggat agtccggaaa cgcttctcga
      241 ggtgggaaac aagggtcctg ccttccgaga gcccctctaa agatgactca agaccagcct
      301 ttgctcgcgg tgcaggaggc cctgaggaag tgctttcccg tggtggagga gcagcagggc
      361 ctgtggcaga gcgctctcag ggactgcccg cccctcctgg cctccctcag caacctggca
      421 gagcagctgc aggccgcaca gaacctacga tttgaggatg tgccgtcact tcgggacttc
      481 ccagacttac aggagcggct gaggcgcaag cagctggcgg ctggtgacac tctcctggac
      541 aggctagggg agaggctagc cgccctcctc aaggtgcgtg atgtagtcag cagccacgtg
      601 gaacacgtgc ttcagatcta tgagcagcat gcagacgtga tcagcctcga tgctgtcctg
      661 caggcttcag ctacaagccc ctctgtggct gaaatgttgg agtggttaca ggatatcgag
      721 agacattatc gaagtttgta cctgaagagg aagtaccttc tgtcctcaat ccagtgggga
      781 gacttgggaa acatccaagc tttgcccaaa gcctgggacc gaatttcgga agacgaacac
      841 ccagaccttg tacgaggtat cctgttgaac gtgtccttct tcctggaaga gtgaagaagc
      901 cgtgtgttta ttgggagact agggggacgc agttgaagac cgaccttact gcgctctgat
      961 atttctaaag aaatgtcagc attgcaactg gacttattgg aaatgtcagt gcctagagcc
     1021 tgaggattgt gctggatgtt gggtcttctt catgccaggt cctgggtgag ggcacatggt
     1081 cacacctagc cctttcctaa ggctcagggg agtggacaga gacagagagg atgcaggaaa
     1141 ggccgtgcag aagaacactg ggggcagaag caacagccac agaagtagca aggaaggaaa
     1201 ggacaggggt agagagtgcc gctgccccca gcatcatcca aagctctgag cctcgttgac
     1261 accaggtcct ggtttcgtgt atttgtgtca gtatccaact ccttgatgaa aaaaagtggc
     1321 tttgatgatt taaagaagta aagggggagt ccctctaatt gtcctttttt aagttgcaat
     1381 taatttggtt tattttttga gtaagtgata ctttcacatt gtacaaaatt catagggtgc
     1441 aagtgtatat tcagtgaaga gttccccgtt actcagtccc cctccctgga ggcagccagt
     1501 gttaaatgtt tcctatgtgt ccttccagaa atattctttg cctctatgag tgcaggggtg
     1561 gttaccctcc aagatagccc catagatccc aatgatccat gcccttgtat actcccctcc
     1621 ccttcagtgt gggctgacct tacagattcg cttctgatga atagaagaca gtggtagtgg
     1681 tggtcatttc tggaactagg ttatgaggaa agactggctt ccatggtggg tgctgtccct
     1741 tgctctcctg gggaagtcat ctgtgaggca gccctgtgga gagctcacat gagagcctga
     1801 tgcctgccag caaccctgag tgaacttggg agcagaccct cttcccgagc tgagccttca
     1861 gatgagacca cagtcccagc taacagcttg actacaacct cgtggggacc taagccaaag
     1921 gcaacctagc tcagccggac ccggattcct ggcctgtgga aacagataat aaatgtttgt
     1981 cttaagtcat taagttttgg ggtaatttgt tacacaatga taggtgacta atgcaagaag
     2041 caaatatttt tgtattctct acaacttcat acaaatagta gcatgctgta tatccagttt
     2101 tgcacctcgt tttttccacc tactgtatct tagagatcat tccgtatgaa tacgtaaaga
     2161 gcttccgtaa ttttttctaa aaacagttgc atagttttct gttgtgtggg tgtaacataa
     2221 tttatttagc cccttactga tggccattta ggttgtttcc aaagtcttga cacttgttag
     2281 gttttggtag ccctccctct cactcccacc cctgctcatg gttttttcct tggaattttc
     2341 agttagttaa taccacccca cccactcac
//
LOCUS       XM_032652457            2308 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zyg-11 family member A, cell cycle
            regulator (ZYG11A), mRNA.
ACCESSION   XM_032652457
VERSION     XM_032652457.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2308
                     /gene="ZYG11A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 4%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764150"
     CDS             1..2271
                     /gene="ZYG11A"
                     /codon_start=1
                     /product="protein zyg-11 homolog A"
                     /protein_id="XP_032508348.1"
                     /db_xref="GeneID:116764150"
                     /translation="MVHFLHPGLSPRTIVPPDAQKDDLGCGVAQEEASPYSLVNICLN
                     VLVANLEKLCSERSDGTLCLPEHWSFPQELADQFVGVMTWQGKLTDRTASIFRGNQMK
                     LKLVSIQKAKISTAAFTQAFCHHRLIELDATAVHTDLSIPDILRGLCSNSWIQQNLRC
                     LLLDSASIPRNSRLLFFGQLTGLRILSVFSVCFHSEDLANVSQLPRLESLDISNTLVT
                     DISALLTCKDRLRSLTMHYLKCLTMTKPQILAVIRELKCLLHLDISDHRQLKSDLAFH
                     LLQQKDILPNIVSLDISGGSCITDEAVELFIQQRPAMQFVGLLATDAGYSEFFATAQD
                     LRVAGGANMSQISEALSRYRNRSCFMKEALYRLFAETFATQVAMPAILKLVAIGMRNH
                     PLDLPVQFTASACALNLTRQDLARGMPVRLLSEVTCLLFKALKNFPHYQQLQKNCLLS
                     LTNSRILVDVPFDRFDAAKFVMRWLCKHENPKMQTMAVSITSILALQLSPEQTAQLKE
                     ELFMAVKELLAIVKQKTTENLDDVTFLFTLKALWNLTDESPAACKHVIENQGLAIFIQ
                     VLETFSESTIQSKVLGLLNNIAEVRELSSKLMTDDVVKHVSSLLHSKELEVSYLAAGI
                     IAHLTSDKQPWISHDLQRRALLQDLYTTIQNWPSSSCKMTALVTYRSFKAFFPLLGNV
                     SRPEVQLWALWAMYHVCSKNPSKYCKMLVEEEGLQLLCDIQKHSEADPQAQHIAASLL
                     DDFRMHFMNYRRLPLC"
     misc_feature    <376..1029
                     /gene="ZYG11A"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    472..546
                     /gene="ZYG11A"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    547..618
                     /gene="ZYG11A"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    619..687
                     /gene="ZYG11A"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    688..771
                     /gene="ZYG11A"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    772..858
                     /gene="ZYG11A"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
ORIGIN      
        1 atggttcact tcttgcaccc aggcctctcg ccccggacta tcgtccctcc ggacgctcag
       61 aaggacgacc tgggctgcgg cgtggcgcag gaggaggcgt ctccctactc tttggtcaac
      121 atctgcctga acgtcctggt tgctaacctg gagaaattgt gttctgaaag atctgatgga
      181 acactttgtc ttccggagca ttggagtttc cctcaggaat tagctgatca attcgttggg
      241 gtcatgactt ggcaaggcaa gctgactgat agaacggcaa gcattttccg aggcaaccaa
      301 atgaaactga agctggtcag tattcaaaaa gctaaaatat ctacagctgc attcacacaa
      361 gccttctgcc atcacagact cattgaactg gatgctactg cagtacacac tgacctctca
      421 attccagaca tcctacgtgg actctgcagc aatagctgga tccagcaaaa cctccgctgt
      481 ctcctgttgg actcagcaag catccctcgc aattcaagac tgttgttctt tggtcagctc
      541 accggtcttc gcatcttaag tgttttcagt gtttgttttc atagtgaaga cctggctaat
      601 gtttctcagt tacccagact ggaaagcttg gatatctcca atactctggt cactgacatc
      661 tctgcgctcc tcacctgtaa ggatcgactc agatctctca caatgcacta tctaaaatgc
      721 ctgaccatga ccaaaccaca gattctcgca gtcattagag aacttaaatg tctgcttcac
      781 cttgatattt ctgatcacag gcaactcaag tcagatctag cttttcattt gctacagcag
      841 aaggatattc tgcctaacat cgtgtcactg gacatttctg ggggcagttg catcactgac
      901 gaagctgtag aactgtttat acagcagcgg cctgcgatgc aatttgtggg actcttggct
      961 acggatgctg gttattctga attctttgct acggcccaag acttgagggt tgccggagga
     1021 gccaatatga gtcagatttc agaagcactg agccgataca ggaataggtc atgttttatg
     1081 aaggaagccc tctacaggct cttcgcagag acatttgcaa cgcaagtagc catgcctgct
     1141 attttaaagc ttgtggctat aggaatgagg aatcatccat tggatttgcc agtgcagttc
     1201 acagccagtg cttgtgccct caacttaaca cgccaggacc tggccagggg gatgcctgtt
     1261 cgtctgttgt cagaggttac ctgtctactt ttcaaggctc tgaaaaattt cccccattac
     1321 cagcagttac agaagaattg ccttctctcc ttaaccaatt ccaggattct tgtggatgtt
     1381 ccatttgaca ggttcgatgc tgccaaattt gttatgagat ggctctgtaa gcatgaaaac
     1441 cccaagatgc aaacaatggc agtgagcata acctctattc tagccctgca gctctcacct
     1501 gagcaaactg cacaacttaa agaagagctc ttcatggcag ttaaggaact tctagcaata
     1561 gtaaaacaaa agactactga gaatttagat gatgtcacct tcttgtttac tttgaaagca
     1621 ctttggaatc ttacagatga atctccagct gcctgcaagc acgttattga aaatcaagga
     1681 ttggcgatct tcatccaagt cttggagact ttttcagagt caacaataca aagcaaagta
     1741 cttggtcttt tgaacaacat agctgaagtc agagaactct cttccaagtt gatgactgac
     1801 gatgtggtaa agcatgtcag cagcttgctg catagtaagg aactggaagt cagctattta
     1861 gctgcaggca tcatagccca cctgacatct gacaaacagc cctggatatc ccatgacctc
     1921 cagaggagag cacttctcca ggatctgtat acaaccatcc agaattggcc aagttcaagt
     1981 tgtaagatga cagcattggt gacctacaga tccttcaagg catttttccc actccttggc
     2041 aacgtctctc gaccagaggt tcagctctgg gcactatggg ccatgtatca tgtctgcagt
     2101 aaaaacccca gcaaatactg caaaatgtta gtcgaagaag aaggactgca gcttttgtgt
     2161 gacatccaga agcacagtga ggcagacccc caagcacagc acattgcagc ctcccttcta
     2221 gatgacttca gaatgcattt catgaattat cggagactcc ctctctgctg aatgcccttc
     2281 ttatcctcag gggcttcaga ggtgctct
//
LOCUS       XM_032652468             507 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KiSS-1 metastasis suppressor (KISS1),
            mRNA.
ACCESSION   XM_032652468
VERSION     XM_032652468.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..507
                     /gene="KISS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764158"
     CDS             75..491
                     /gene="KISS1"
                     /codon_start=1
                     /product="metastasis-suppressor KiSS-1"
                     /protein_id="XP_032508359.1"
                     /db_xref="GeneID:116764158"
                     /translation="MNSLVSWQLMIFLCAISFRETLEKAPPMENPRATGPRLRPPALL
                     ASGAQSPRCAERKPAAAGPSPRGASPCPPPESSAGPQLPGLCAPRSRLIPAPRGAVLV
                     QREKDLSAYNWNSFGLRYGKRQAAPPGSRGQGAGRG"
     misc_feature    216..437
                     /gene="KISS1"
                     /note="Region: Kisspeptin; pfam15152"
                     /db_xref="CDD:434504"
ORIGIN      
        1 actcagccaa gcagtgtcat cacctccgag acccctcagg acggagccaa ggcaaggaca
       61 cttccaggac cacgatgaac tcactggttt cttggcagct gatgattttc ctttgtgcca
      121 tctccttcag ggagacatta gaaaaggcgc cgcccatgga gaatcctaga gccacaggcc
      181 cgcggctcag acccccggcg ctcctggcct ccggggcgca gagcccgcgg tgcgcggaga
      241 ggaaacccgc cgctgccggg ccgagccctc ggggggcctc gccgtgccct ccacccgaga
      301 gctccgctgg gccccagctg ccgggcctgt gcgccccccg cagtcgcctg atccccgccc
      361 cgcgcggcgc ggtgctggtg cagcgggaga aggacctgtc cgcctacaac tggaactcct
      421 tcggcctacg ttacggaaag cggcaggctg cgccgcccgg cagccgcggc caaggcgccg
      481 ggcggggctg agcgcggagg tgcggcc
//
LOCUS       XR_004352739            2386 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764161
            (LOC116764161), ncRNA.
ACCESSION   XR_004352739
VERSION     XR_004352739.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2386
                     /gene="LOC116764161"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116764161"
     ncRNA           1..2386
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764161"
                     /product="uncharacterized LOC116764161"
                     /db_xref="GeneID:116764161"
ORIGIN      
        1 taagtacata gatggaagct tctggagatc ctgctccgtc gccccagtgt tcagactacc
       61 tgttcaggac aatgccgttg tacagtagtc tgcacattgg ttagactggg caagggagag
      121 caacgccatg gacagctggg gacaaaagtt gctgtttccg aggagaagac atttgtttgc
      181 cccttttttg aatctcatat ccagtgtttt tcttcacagg ttttgcacag tagggaccag
      241 gaagccctcg ggacactgcc gagaaaggac tgctcgaggg aagacctgtg gggatcatgg
      301 gatctattcc agaggaaact aaccaacaat gaacaacttc tactaaaact acccctggat
      361 gtaatggttg catgcatcat tcctttaatt gagcagagtt aactggatca aattatttat
      421 gggagagaga gggaaagcta tacagaatta cagtaatttt aaatttccac caatatactc
      481 tttgtaagtg aatcactcca taaatatttt ctgttgcact gaatgcagca acaataacaa
      541 aatagtttct taaggtattt gtttttgcat actctggcct tgtaattatt taaacagcag
      601 ccaagtttag tgatgttttt tattctgtca agaaaaaaaa aataagtcct ctactcagaa
      661 gtgatgacca gaaacagaat ctgacattta ttttttgaaa ttaaataaat aaatggaaag
      721 ttgcatttat caactctttg ttaaaactgt accatatcta atcactgcat aaaagttcag
      781 atgtgtagaa tactgtcatt tttttcagtc tctaaaaact attttgctct ccataaactt
      841 tctatttgct attttctcag aattttacaa ttaaagcaaa ataacaaact acttgttttc
      901 cttaaaattc tttgaaaaaa tccctaagta cacattcctt ggacaataag gttttgtttt
      961 gttttttaaa attctattta ttggaatttt gaatatctgg atattttatt ttttaaagag
     1021 cagggaaatt tgttaaatac ctctacggaa gtgaattgat catttatatt aaaataacca
     1081 gtagaattat tctcaagtca ccagaattaa attttctaac tgtatattta acaccattaa
     1141 ttctttctta tatgaatttt aaggaaattt tccagagggt ctggttttac tttttagata
     1201 cgaaatgaag ctttctcttc tgtgtttaag gtactatttt gtaactgcac tgcactaaca
     1261 atgtccaata tacattgtga gcatcactgt gggtaacaac tttttagctt ataccctttt
     1321 gattcatggc acagccctgt agttaattaa gaggaggaaa acttaagctc acaactgctt
     1381 tttatttggt tttcaaatcc atactttaaa actttgcatt aaaaaaatat gagaaattta
     1441 tataagttcc tgttgcgtaa taaaatattg ataaaaatac atccccttgt caaaatccca
     1501 ctaacaaagc atcagatacc aaagtccatt tgttgcattg tcgaatacat taggctcatt
     1561 aattattttg aaaatggctg ccatttccat gtaaatgaca agtttctttt tcatgggcta
     1621 gattatggta cttacctatt acaagaaaca tgtataaaca tagtctttat ctttaacttc
     1681 agttttaaaa tatgcagagt tttgtgaaga ggaaaaacat ctggttcaat tactctgaac
     1741 tctgactgca tgtgggccag tagtaatatg aactggattt aagaataaac cttgtgttta
     1801 gtcttttttg ttgttgtttt atccttaaaa tttcaatgtg agttttctgc tctgtcaatt
     1861 atccatgtta gcacatttgg aatgaatgta taagtgtact ttctgaataa agtcaaaagt
     1921 ctaacttgtt tttagttcca taatgtttta atgtttaatt ctattgtgtg tttttctccc
     1981 tttcccctga ccctccaaaa tcaccaaatc tggaaaacag actgattgta tctgcccatg
     2041 agcaaaggaa acctgaagga accaagggcc tggctggacg gagttgtcat gtgtctgcct
     2101 gtctacactt gctgtgcaga acatccgctc acctgtacag caggcacaga caggcagtca
     2161 catgacaacc cagcctgaat gacaaccagc cattgaaaga aagcagccct cacaccatag
     2221 catctacacc aagagctaca accaaaatga ggggcgcggg gcctggggtt ttaatttgtt
     2281 ggtttcttaa ctcttatgta ttattatttt gattcaaata ttgaaaccca ccaaaagtaa
     2341 agtgagtggt gcttatgaaa tataataaaa cccatttctg aaaatg
//
LOCUS       XR_004352744             450 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764165
            (LOC116764165), ncRNA.
ACCESSION   XR_004352744
VERSION     XR_004352744.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..450
                     /gene="LOC116764165"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764165"
     ncRNA           1..450
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764165"
                     /product="uncharacterized LOC116764165"
                     /db_xref="GeneID:116764165"
ORIGIN      
        1 gagaagaggg tgcttccggt cccgtgttct ctttggccct cggggaatct aaaggtgcag
       61 tgtttacggc cagaccgtaa ggcagccgtc ctaagtgttc cttccccacc tcttccgggg
      121 ctggcctagg acctgcagca caagcgcact gtcccaccga ttccggggct ggcctcgtac
      181 cggtagcccg tactcacttc ttgaccttcg ccgcggcggg cctcggactt gcagcacgcg
      241 cacacctaga ggaagacccg acagtcaatc tggttgtttc cgttgctgtg ctcagggcat
      301 tgtagtttgg atcaagatca tctcttgctt aaatgatttc tccatctcca gttcccaccc
      361 caccacttgt tggattattc taaagtgcaa atgtgatcat taaaatgtgt catgacttcc
      421 ctgtgcccct aaaataaagt accaacacct
//
LOCUS       XM_032652498            1575 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proteasome 20S subunit alpha 5 (PSMA5),
            transcript variant X1, mRNA.
ACCESSION   XM_032652498
VERSION     XM_032652498.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1575
                     /gene="PSMA5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 89% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764168"
     CDS             108..863
                     /gene="PSMA5"
                     /codon_start=1
                     /product="proteasome subunit alpha type-5 isoform X1"
                     /protein_id="XP_032508389.1"
                     /db_xref="GeneID:116764168"
                     /translation="MFLTRSEYDSSASYMLSDFGQISQPLCVSTSSSQKWGVNTFSPE
                     GRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC
                     AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMS
                     RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLK
                     EAIKSSLIILKQVMEEKLNATNIEVFFCFIQIS"
     misc_feature    216..836
                     /gene="PSMA5"
                     /note="The 20S proteasome, multisubunit proteolytic
                     complex, is the central enzyme of nonlysosomal protein
                     degradation in both the cytosol and nucleus. It is
                     composed of 28 subunits arranged as four homoheptameric
                     rings that stack on top of one another forming...; Region:
                     proteasome_alpha_type_5; cd03753"
                     /db_xref="CDD:239722"
     misc_feature    order(216..224,228..233,237..242,252..254,261..263,
                     270..275,282..284,306..308,351..353,357..362,429..437,
                     441..446,537..539,546..548,555..560,582..596,645..647,
                     660..665,669..671,675..680,684..686)
                     /gene="PSMA5"
                     /note="alpha subunit interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239722"
     misc_feature    order(288..290,336..338,342..344,381..383,699..701)
                     /gene="PSMA5"
                     /note="active site"
                     /db_xref="CDD:239722"
ORIGIN      
        1 taacggagac ttggctgtgt ggcggtgtgg gtgagttggg tgcaggtgga ctcgtcttgg
       61 ccctcagaat ccccgagtgg ccgctgccgc tttctcctgc ccttaccatg tttctcaccc
      121 ggtctgagta cgacagttct gcctcttata tgctgagtga ctttgggcaa attagtcaac
      181 ctctttgtgt ctcaacttcc tcatctcaaa aatggggtgt gaatactttt tctcctgaag
      241 gaagattatt tcaagtggaa tatgccattg aggctatcaa gcttggttct acagccattg
      301 ggatccagac atcagagggt gtgtgcctag ctgtggagaa gagaattacc tctccactca
      361 tggagcccag cagcattgag aaaattgtag agattgatgc tcacataggt tgtgccatga
      421 gtgggctaat tgctgatgct aagactttaa ttgataaagc cagagtggag acacagaacc
      481 actggttcac ctacaatgag accatgacag tggagagtgt gactcaggct gtgtcaaatc
      541 tggctctaca gtttggagaa gaagatgcag atccaggtgc catgtctcgt ccctttggag
      601 tagcactgtt atttggagga gttgatgaaa aaggacccca gctgtttcat atggacccat
      661 ctggaacctt tgtacagtgt gatgctcgag cgattggctc tgcttcagag ggtgcccaga
      721 gctccttgca agaagtttac cacaagtcta tgacactgaa agaagccatc aaatcttcac
      781 tcataatcct caaacaagta atggaggaga agctgaatgc aactaacata gaggtatttt
      841 tctgttttat tcagatatca tagctctcat tgctgaagat caagatagta acatttttgt
      901 atgctcagtt ctcaagaagt tattatcctg tgaataagca actttagtaa cgtggtatgg
      961 cagaagccag aatttggtga gttaaagaat aaaagggagt gatgaagtgg acaaaacaag
     1021 aatatgctgc cttctcaaga agtaattaat gtcagtagca ggcagcatta aagaaaagga
     1081 tttttgtctt tttaaggatg gggaaagact tgaaaatact tatatagtct gagaagcaag
     1141 tagtggatag aaaaatgtta aaagaattaa gggcttccct ggtggtgcag tggttgagag
     1201 tctgcctgcc gatgcagggg acacgggttc gtgccctggt ccaggaggat cccacgtgcc
     1261 gcggagcggc tgggcccatg agccatggcc gctgggcctg cgcatctgga gcctgtgctc
     1321 tgcgacagga gaggccacag cagtgagagg cccgcgtacc acaaaaaaaa aaaaaaaaaa
     1381 aaaagaatta aaagtggaag ttagatagtg atggaaaagt tctagaagag agaagccatg
     1441 gtacaaatga aggagttggt tttgaaaaat agaattgatt cagcattata ctgaataccc
     1501 attacatgcc aggtactatg tagatgccag ggatacagac acagaaaatc cagttcccat
     1561 taagtagtat agagg
//
LOCUS       XM_032652507            1004 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proteasome 20S subunit alpha 5 (PSMA5),
            transcript variant X2, mRNA.
ACCESSION   XM_032652507
VERSION     XM_032652507.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1004
                     /gene="PSMA5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 2 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764168"
     CDS             113..838
                     /gene="PSMA5"
                     /codon_start=1
                     /product="proteasome subunit alpha type-5 isoform X2"
                     /protein_id="XP_032508398.1"
                     /db_xref="GeneID:116764168"
                     /translation="MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSE
                     GVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFT
                     YNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSG
                     TFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELA
                     TVQPGQNFHMFTKEELEEVIKDI"
     misc_feature    134..772
                     /gene="PSMA5"
                     /note="The 20S proteasome, multisubunit proteolytic
                     complex, is the central enzyme of nonlysosomal protein
                     degradation in both the cytosol and nucleus. It is
                     composed of 28 subunits arranged as four homoheptameric
                     rings that stack on top of one another forming...; Region:
                     proteasome_alpha_type_5; cd03753"
                     /db_xref="CDD:239722"
     misc_feature    order(140..151,155..160,164..169,179..181,188..190,
                     197..202,209..211,233..235,278..280,284..289,356..364,
                     368..373,464..466,473..475,482..487,509..523,572..574,
                     587..592,596..598,602..607,611..613)
                     /gene="PSMA5"
                     /note="alpha subunit interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239722"
     misc_feature    order(215..217,263..265,269..271,308..310,626..628)
                     /gene="PSMA5"
                     /note="active site"
                     /db_xref="CDD:239722"
ORIGIN      
        1 gttggtaacg gagacttggc tgtgtggcgg tgtgggtgag ttgggtgcag gtggactcgt
       61 cttggccctc agaatccccg agtggccgct gccgctttct cctgccctta ccatgtttct
      121 cacccggtct gagtacgaca ggggtgtgaa tactttttct cctgaaggaa gattatttca
      181 agtggaatat gccattgagg ctatcaagct tggttctaca gccattggga tccagacatc
      241 agagggtgtg tgcctagctg tggagaagag aattacctct ccactcatgg agcccagcag
      301 cattgagaaa attgtagaga ttgatgctca cataggttgt gccatgagtg ggctaattgc
      361 tgatgctaag actttaattg ataaagccag agtggagaca cagaaccact ggttcaccta
      421 caatgagacc atgacagtgg agagtgtgac tcaggctgtg tcaaatctgg ctctacagtt
      481 tggagaagaa gatgcagatc caggtgccat gtctcgtccc tttggagtag cactgttatt
      541 tggaggagtt gatgaaaaag gaccccagct gtttcatatg gacccatctg gaacctttgt
      601 acagtgtgat gctcgagcga ttggctctgc ttcagagggt gcccagagct ccttgcaaga
      661 agtttaccac aagtctatga cactgaaaga agccatcaaa tcttcactca taatcctcaa
      721 acaagtaatg gaggagaagc tgaatgcaac taacatagag ctagccacag tgcagcctgg
      781 ccagaatttc cacatgttca caaaggaaga acttgaagag gttatcaagg acatttaagg
      841 aagcgtggtc ctcagaattt cttggggaca gtttcagttc tcctagttgc ccttaacttt
      901 tatttccagc tccaattcct tggaaaatct ccagtgtatg tgcatttttt tatgatgtct
      961 gtacataaag gcagttctga aataaagaaa aattttgaat attt
//
LOCUS       XM_032652513             929 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proteasome 20S subunit alpha 5 (PSMA5),
            transcript variant X3, mRNA.
ACCESSION   XM_032652513
VERSION     XM_032652513.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..929
                     /gene="PSMA5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764168"
     CDS             212..763
                     /gene="PSMA5"
                     /codon_start=1
                     /product="proteasome subunit alpha type-5 isoform X3"
                     /protein_id="XP_032508404.1"
                     /db_xref="GeneID:116764168"
                     /translation="MEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFT
                     YNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSG
                     TFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELA
                     TVQPGQNFHMFTKEELEEVIKDI"
     misc_feature    <212..697
                     /gene="PSMA5"
                     /note="The Ntn hydrolases (N-terminal nucleophile) are a
                     diverse superfamily of of enzymes that are activated
                     autocatalytically via an N-terminally lcated nucleophilic
                     amino acid. N-terminal nucleophile (NTN-) hydrolase
                     superfamily, which contains a...; Region: Ntn_hydrolase;
                     cl00467"
                     /db_xref="CDD:469781"
ORIGIN      
        1 gcgggctgaa ggggttgcga gcgcacgcgc agttggtaac ggagacttgg ctgtgtggcg
       61 gtgtgggggt gtgaatactt tttctcctga aggaagatta tttcaagtgg aatatgccat
      121 tgaggctatc aagcttggtt ctacagccat tgggatccag acatcagagg gtgtgtgcct
      181 agctgtggag aagagaatta cctctccact catggagccc agcagcattg agaaaattgt
      241 agagattgat gctcacatag gttgtgccat gagtgggcta attgctgatg ctaagacttt
      301 aattgataaa gccagagtgg agacacagaa ccactggttc acctacaatg agaccatgac
      361 agtggagagt gtgactcagg ctgtgtcaaa tctggctcta cagtttggag aagaagatgc
      421 agatccaggt gccatgtctc gtccctttgg agtagcactg ttatttggag gagttgatga
      481 aaaaggaccc cagctgtttc atatggaccc atctggaacc tttgtacagt gtgatgctcg
      541 agcgattggc tctgcttcag agggtgccca gagctccttg caagaagttt accacaagtc
      601 tatgacactg aaagaagcca tcaaatcttc actcataatc ctcaaacaag taatggagga
      661 gaagctgaat gcaactaaca tagagctagc cacagtgcag cctggccaga atttccacat
      721 gttcacaaag gaagaacttg aagaggttat caaggacatt taaggaagcg tggtcctcag
      781 aatttcttgg ggacagtttc agttctccta gttgccctta acttttattt ccagctccaa
      841 ttccttggaa aatctccagt gtatgtgcat ttttttatga tgtctgtaca taaaggcagt
      901 tctgaaataa agaaaaattt tgaatattt
//
LOCUS       XM_032652527            1313 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 81 (TMEM81), mRNA.
ACCESSION   XM_032652527
VERSION     XM_032652527.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1313
                     /gene="TMEM81"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764182"
     CDS             5..835
                     /gene="TMEM81"
                     /codon_start=1
                     /product="transmembrane protein 81"
                     /protein_id="XP_032508418.1"
                     /db_xref="GeneID:116764182"
                     /translation="MKTLATSFILGNLVLAFYLPLVMTLPKTLAIPEKLQEAVGKVIV
                     NATTCTVTCGLGYKEETVCEVGPDGVRRKCKSQRLECLTNWICGMLHFTVLTGQEFKL
                     SCLSSDILEVGQEAFRFTWRLARGIISTDDEVFKPFRASFHFIKFQSAQEYDSGTYRC
                     DVQLLKNLRLVKRLYFGLRVLPPNLVNLNFHQSLTEDQKLIDEGLEVNLDNYSRPQRP
                     PWKKKVTIAVGIGIASGVTGGVLVSIALCGGLRVIHSSAILETLQTLLPKGWLLRKPN
                     "
     misc_feature    281..490
                     /gene="TMEM81"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
ORIGIN      
        1 agacatgaag actttggcca ctagtttcat ccttgggaac ctggtgttgg ccttctatct
       61 acctttggtg atgactttac ctaaaacact ggccattcct gagaaactgc aagaagctgt
      121 ggggaaagtt attgtcaatg ccacaacctg tactgtcacc tgtggccttg gctataagga
      181 ggagaccgtc tgtgaggtgg gccctgatgg agtgagaagg aagtgtaagt ctcagcgctt
      241 ggaatgtctg accaactgga tctgtggaat gctccatttc accgttctca cagggcagga
      301 atttaagctg agctgtctga gttcagacat cctggaggtt ggacaggaag ctttccgatt
      361 cacctggaga cttgctcggg gtatcatctc aactgatgat gaagtcttca aacccttccg
      421 agccagtttc cactttataa agtttcagtc cgctcaggag tatgactctg ggacctaccg
      481 gtgtgatgtg cagctgttaa aaaacttgag acttgtcaag aggctctatt tcgggctgag
      541 ggtccttcct cctaacttgg tgaacctgaa tttccatcag tcccttactg aggatcagaa
      601 gttaatagat gagggcctgg aagtgaatct ggacaactat tccaggcctc agcgcccacc
      661 gtggaaaaag aaggtgacca tagctgtggg gataggaatt gccagtggtg tgactggtgg
      721 cgtgttggtg agcatcgccc tgtgcggtgg actgagggtg atccacagca gtgccatcct
      781 tgagacctta caaaccttgc tgccgaaggg ctggctgctc aggaagccaa actagctttt
      841 caggggagtg ttctgcctgc ctgattgtgg attgactaag aggggggctt ccactaccaa
      901 aggagtgagt gggggttgtg atgcggggca acatcatggt agctgtgggc aatattccct
      961 aattctgtgt cccagatgga tctcttccag atcttccctg cccactaggt acccaggaaa
     1021 cctgactgca ggcatctccc tgctcctggg aagagttctg tcttccgagt ttgcattcat
     1081 tttctaccct ttacaacttg tatgcccccc taccttgatc tcccttctga gcagtataat
     1141 catggagaag gatataatag cttttctagt gaaagtgtct ttttcctctt caataaagac
     1201 gattcccagt agctgtttgg aaacctaacc ttttctgccc tttagtttaa aatttcttgc
     1261 agttgtttaa attgtcccac aatcagtctg gtttggggtt aaacttacac cag
//
LOCUS       XM_032652541            1680 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus EPS8 like 3 (EPS8L3), transcript variant
            X1, mRNA.
ACCESSION   XM_032652541
VERSION     XM_032652541.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1680
                     /gene="EPS8L3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 8% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764187"
     CDS             1..1680
                     /gene="EPS8L3"
                     /codon_start=1
                     /product="epidermal growth factor receptor kinase
                     substrate 8-like protein 3 isoform X1"
                     /protein_id="XP_032508432.1"
                     /db_xref="GeneID:116764187"
                     /translation="MSRPSSRAIYLHRKEYLQNLTSQPTHLQLRVEHLLTCKLGMQRV
                     QEPKDALQKLQEMDAQGKVWSQDLLLQVKGGWLQLLDIETKEELESYRLDSIKDMDVA
                     LNTCSYNSVLSITVQDSGLPATSTLLLQCQEVGAEQLKTSLQKALEEELEQRPRFGAL
                     LPGQDRCRGPLLERPIPKEQVPPLECGPPPEQHHWMTPEHNTPPTPRPLPHHSIIQNS
                     SAFTLPPSRRSPSPGDPERDKEVLSHVLRDIELFMEKLKEDQSNTSHKKKKQRKKKIK
                     PQGGITEAHYIDCFQKIKYSFNLLGKLATRLQDTSAPEFVHLLFQTLNSILEQCPEPG
                     LAVQVISPLLTTKAIDLLQSCLSPPESNLWKGLGIAWTTSQANWTGSEPLPYQPTFYD
                     GWQLPEPSYEEEPSRCQDSTSLRGGSPRLGSNSHFAQEETHNHGPHPVPSRPGPVKPA
                     VKMQVLYEFEARNPRELTVVQGEVLEVLDQSKRWWLVKNEMGRSGYIPSNILEPLQSG
                     LPGSQSKSFPPAPGLRLSSRPEEVTAWLQAENFSTVTVKTLGSMPGTSCFT"
     misc_feature    73..462
                     /gene="EPS8L3"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; Region:
                     PTB_EPS8; cd01210"
                     /db_xref="CDD:269921"
     misc_feature    order(94..96,328..330,388..390)
                     /gene="EPS8L3"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:269921"
     misc_feature    order(286..303,349..351,418..420,430..432)
                     /gene="EPS8L3"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:269921"
     misc_feature    1357..1515
                     /gene="EPS8L3"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; Region:
                     SH3_Eps8; cd11764"
                     /db_xref="CDD:212698"
     misc_feature    order(1357..1371,1375..1377,1384..1386,1393..1401,
                     1420..1437,1441..1467,1480..1491,1501..1515)
                     /gene="EPS8L3"
                     /note="swapped dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212698"
     misc_feature    order(1375..1377,1387..1395,1444..1452,1456..1458,
                     1483..1488,1492..1503)
                     /gene="EPS8L3"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212698"
     misc_feature    1567..>1674
                     /gene="EPS8L3"
                     /note="SAM (Sterile alpha motif); Region: SAM_superfamily;
                     cl15755"
                     /db_xref="CDD:472832"
ORIGIN      
        1 atgtcccggc ccagcagcag agccatttac ttgcaccgga aggagtactt gcagaatctc
       61 acctcacagc ccacccacct gcagctcagg gtggagcacc tgctgacatg taagctgggg
      121 atgcagagag tccaggagcc caaggatgcc ctgcaaaagc tgcaggaaat ggacgctcag
      181 ggcaaggtgt ggagccagga cttgctcctg caggtcaagg gtggctggct ccagctgctg
      241 gacatcgaga caaaggagga actggaatct taccgcctgg acagcatcaa ggacatggac
      301 gtggcactca acacctgctc ctacaactct gtcctgtcca tcactgtgca ggattcaggc
      361 ctgccagcca ctagcactct gcttctccag tgccaggaag tgggggcaga gcaactgaag
      421 accagcctgc agaaggctct ggaggaggag ctagagcaaa ggccccgatt cggagccctt
      481 ctcccaggtc aggacagatg cagggggcct cttctggaaa ggccgatccc taaggagcag
      541 gtacctcctc tggagtgcgg accccctcca gagcagcacc actggatgac cccagagcac
      601 aacacaccac caaccccgag gcccctgcca caccactcca tcatccaaaa ctcaagtgcc
      661 ttcactttgc ctccttcgag gaggtcccca tcccccgggg atccagaacg ggataaggag
      721 gtgctgagcc acgtcctaag agacatcgag ctattcatgg aaaagctgaa ggaggaccag
      781 tcaaacacca gtcataagaa gaagaaacag aggaagaaaa agataaagcc tcaggggggg
      841 ataacagagg cacattacat cgactgcttc cagaagatca agtacagctt caacctcctg
      901 ggaaagctgg ccacgaggct gcaggataca agcgcccctg agttcgtaca cctcctcttc
      961 caaactctga actccatcct ggagcagtgc cctgagcctg gcctagcagt ccaagtgatc
     1021 tcacccctcc tcaccaccaa ggccattgat ctgctgcagt cctgtctaag cccacctgag
     1081 agtaacctct ggaaggggct gggcatagcc tggaccacca gccaggccaa ctggacaggc
     1141 agtgagcccc tgccctacca acccacattc tatgacggtt ggcagcttcc agaaccttcc
     1201 tacgaggagg aaccttcaag atgccaagac tctacttccc tccgtggggg aagccctagg
     1261 ttagggagca actcgcactt tgctcaagag gagacacaca accacggacc ccaccctgtg
     1321 ccctccagac ccggacctgt caagccagcc gtgaaaatgc aagtcctata tgagtttgaa
     1381 gctaggaacc cacgggaact gactgtggtc cagggagagg tactggaggt tctggaccag
     1441 agtaagcggt ggtggctggt gaagaatgaa atgggacgga gcggctacat ccccagcaac
     1501 atcctggagc ccctgcagtc ggggctccct ggaagccaga gcaagtcgtt ccctccggct
     1561 ccagggcttc gacttagctc aaggcctgag gaggtcacag cctggttgca ggcagagaac
     1621 ttctccactg tcacagtgaa gactctcggg tccatgccgg gcaccagctg cttcacatga
//
LOCUS       XM_032652547            1599 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus EPS8 like 3 (EPS8L3), transcript variant
            X2, mRNA.
ACCESSION   XM_032652547
VERSION     XM_032652547.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1599
                     /gene="EPS8L3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 8% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764187"
     CDS             1..1599
                     /gene="EPS8L3"
                     /codon_start=1
                     /product="epidermal growth factor receptor kinase
                     substrate 8-like protein 3 isoform X2"
                     /protein_id="XP_032508438.1"
                     /db_xref="GeneID:116764187"
                     /translation="MSRPSSRAIYLHRKEYLQNLTSQPTHLQLRVEHLLTCKLGMQRV
                     QEPKDALQKLQEMDAQGKVWSQDLLLQVKGGWLQLLDIETKEELESYRLDSIKDMDVA
                     LNTCSYNSVLSITVQDSGLPATSTLLLQCQEVGAEQLKTSLQKALEEELEQRPRFGAL
                     LPGQDRCRGPLLERPIPKEQVPPLECGPPPEQHHWMTPEHNTPPTPRPLPHHSIIQNS
                     SAFTLPPSRRSPSPGDPERDKEVLSHVLRDIELFMEKLKEDQSNTSHKKKKQRKKKIK
                     PQGGITEAHYIDCFQKIKYSFNLLGKLATRLQDTSAPEFVHLLFQTLNSILEQCPEPG
                     LAVQVISPLLTTKAIDLLQSCLSPPESNLWKGLGIAWTTSQANWTGSEPLPYQPTFYD
                     GWQLPEPSYEEETHNHGPHPVPSRPGPVKPAVKMQVLYEFEARNPRELTVVQGEVLEV
                     LDQSKRWWLVKNEMGRSGYIPSNILEPLQSGLPGSQSKSFPPAPGLRLSSRPEEVTAW
                     LQAENFSTVTVKTLGSMPGTSCFT"
     misc_feature    73..462
                     /gene="EPS8L3"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; Region:
                     PTB_EPS8; cd01210"
                     /db_xref="CDD:269921"
     misc_feature    order(94..96,328..330,388..390)
                     /gene="EPS8L3"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:269921"
     misc_feature    order(286..303,349..351,418..420,430..432)
                     /gene="EPS8L3"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:269921"
     misc_feature    1276..1434
                     /gene="EPS8L3"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; Region:
                     SH3_Eps8; cd11764"
                     /db_xref="CDD:212698"
     misc_feature    order(1276..1290,1294..1296,1303..1305,1312..1320,
                     1339..1356,1360..1386,1399..1410,1420..1434)
                     /gene="EPS8L3"
                     /note="swapped dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212698"
     misc_feature    order(1294..1296,1306..1314,1363..1371,1375..1377,
                     1402..1407,1411..1422)
                     /gene="EPS8L3"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212698"
     misc_feature    1486..>1593
                     /gene="EPS8L3"
                     /note="SAM (Sterile alpha motif); Region: SAM_superfamily;
                     cl15755"
                     /db_xref="CDD:472832"
ORIGIN      
        1 atgtcccggc ccagcagcag agccatttac ttgcaccgga aggagtactt gcagaatctc
       61 acctcacagc ccacccacct gcagctcagg gtggagcacc tgctgacatg taagctgggg
      121 atgcagagag tccaggagcc caaggatgcc ctgcaaaagc tgcaggaaat ggacgctcag
      181 ggcaaggtgt ggagccagga cttgctcctg caggtcaagg gtggctggct ccagctgctg
      241 gacatcgaga caaaggagga actggaatct taccgcctgg acagcatcaa ggacatggac
      301 gtggcactca acacctgctc ctacaactct gtcctgtcca tcactgtgca ggattcaggc
      361 ctgccagcca ctagcactct gcttctccag tgccaggaag tgggggcaga gcaactgaag
      421 accagcctgc agaaggctct ggaggaggag ctagagcaaa ggccccgatt cggagccctt
      481 ctcccaggtc aggacagatg cagggggcct cttctggaaa ggccgatccc taaggagcag
      541 gtacctcctc tggagtgcgg accccctcca gagcagcacc actggatgac cccagagcac
      601 aacacaccac caaccccgag gcccctgcca caccactcca tcatccaaaa ctcaagtgcc
      661 ttcactttgc ctccttcgag gaggtcccca tcccccgggg atccagaacg ggataaggag
      721 gtgctgagcc acgtcctaag agacatcgag ctattcatgg aaaagctgaa ggaggaccag
      781 tcaaacacca gtcataagaa gaagaaacag aggaagaaaa agataaagcc tcaggggggg
      841 ataacagagg cacattacat cgactgcttc cagaagatca agtacagctt caacctcctg
      901 ggaaagctgg ccacgaggct gcaggataca agcgcccctg agttcgtaca cctcctcttc
      961 caaactctga actccatcct ggagcagtgc cctgagcctg gcctagcagt ccaagtgatc
     1021 tcacccctcc tcaccaccaa ggccattgat ctgctgcagt cctgtctaag cccacctgag
     1081 agtaacctct ggaaggggct gggcatagcc tggaccacca gccaggccaa ctggacaggc
     1141 agtgagcccc tgccctacca acccacattc tatgacggtt ggcagcttcc agaaccttcc
     1201 tacgaggagg agacacacaa ccacggaccc caccctgtgc cctccagacc cggacctgtc
     1261 aagccagccg tgaaaatgca agtcctatat gagtttgaag ctaggaaccc acgggaactg
     1321 actgtggtcc agggagaggt actggaggtt ctggaccaga gtaagcggtg gtggctggtg
     1381 aagaatgaaa tgggacggag cggctacatc cccagcaaca tcctggagcc cctgcagtcg
     1441 gggctccctg gaagccagag caagtcgttc cctccggctc cagggcttcg acttagctca
     1501 aggcctgagg aggtcacagc ctggttgcag gcagagaact tctccactgt cacagtgaag
     1561 actctcgggt ccatgccggg caccagctgc ttcacatga
//
LOCUS       XM_032652559            5192 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1614 ortholog (KIAA1614), transcript
            variant X1, mRNA.
ACCESSION   XM_032652559
VERSION     XM_032652559.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5192
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5192
                     /gene="KIAA1614"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764196"
     CDS             544..4182
                     /gene="KIAA1614"
                     /codon_start=1
                     /product="uncharacterized protein KIAA1614 homolog isoform
                     X1"
                     /protein_id="XP_032508450.1"
                     /db_xref="GeneID:116764196"
                     /translation="MEGMEAAARPAGGSLQGPKIGSRTASSMEVTSAVERSGPEPQPE
                     NGHLPRHWPCPREDRTHSLMAPQPPGAQGIQVQGPSVLESKVRALKEKMTAGKQGASL
                     CLTSHERPSLKKPKCRRVKVGGTRTPSEGSSLPDAVVVHHAQNPNNGLLDSSITEEES
                     ARNGAPGPPRLPASGLQSWNRRSPWPPEAVRTLPDHDRAMPPGPSSLQESPMHRVTPS
                     QPEGSGPCNKTTHRPSLRKGRSHPLQDGLVTQEDLDSLSLTSEEDFVPRPALLGELWR
                     AGDLGALGTGGSTLSLSDRVERNRLLLQEMLSVGGQGPSKVGSPAWTSSRDRAVPERL
                     AGDVDWDSGISLQDADQSRSFSPKPEPVLSPRHEEAKHLLQRARMKARTRPIRASHDI
                     VPTLAQGSRDGRKSPALDPRMTLACRDNLQNGNTSDSSSGESSSGQWPKRASSPSHVR
                     FEDESARDAESRYLERLQQRQRQVLSTTLQPADQGPLRSKPDLADYVHGGCRRQDAGA
                     GSLHPLLGGLEPRGLPAPPLAQGSERRCRACGHCIAPDPRVLREREAACGMEGALAQL
                     RSPRGLGGPLRLFPAEPGLHTEWIRETHIGGQARPEEVDSALDSTDTSDSCRTDSEEA
                     GTSQPSRVRGSSPRLRASRPRGGQRLFRKAEMGPLRSPQAPHYLPGLELVEVLDEVTE
                     GMGQTPEGTLLPREDAFSKPLVQDSKRASLGSQPGPGLENHWAQPVDSRTAYAIASSV
                     KVGSSGPGRQAQVVDSQESLGTDSLNQSHTEPSAPHQAQQPTASLSPEGWVPTPPSSK
                     KTTSPVSHRKAALAGLCRPGDQGEPMDTSVPSSRSLVPRACELTRPQPQPRSPCVTRP
                     LRAPSTSHCDNSTPQGLQEPWGEAILAGSGEKGTYSQKPAVPPEDHGDGGLQGCLTSA
                     AVGTISSMGITFSPASEETESGQEPEGGLQRTEPSSVGRVSSRALPGVNVGPSLPSAA
                     PSDKNKKSSGSISSTLGLKKFFLALTSQGTRPKLGKSRSYSVEQLQPPAPSPASHTSA
                     PKMKRAPSLQSLHPVSPSRQRWKAASFQNLHSLLSGKVDRSNLYLVGEPGHHNAADRP
                     AKAPPRPSLSVEDVSAPGLARAVGRMVEVFPDGTSQLQLQRSPEGTFGFCVASGNGRR
                     DSGLYVQEMADESTAKLYSGLLGVGDEILEVNGAKVAGLGLAHIRELLAHAESLSIRV
                     LRQRPVPR"
     misc_feature    1600..1974
                     /gene="KIAA1614"
                     /note="Domain of unknown function (DUF4685); Region:
                     DUF4685; pfam15737"
                     /db_xref="CDD:464834"
     misc_feature    <2854..3696
                     /gene="KIAA1614"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3922..4161
                     /gene="KIAA1614"
                     /note="canonical PDZ domain; Region: PDZ_canonical;
                     cl49608"
                     /db_xref="CDD:483948"
     misc_feature    order(3943..3963,4000..4002,4009..4011,4102..4104,
                     4114..4116,4123..4128)
                     /gene="KIAA1614"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467153"
ORIGIN      
        1 ccccgtccga gtccccaaac tcgcgggctt gctcgtcgct tagacgtctg gagagcatca
       61 ctcgccgccg ccgggagggg cagctccgca gggcgcgggc ggccgggacc ggggccgcgg
      121 cgagcgcgga gggcggcggg gcagggtggg ggccggggcc gctcctctag ccccttccgc
      181 cgcccctcct ttctgctctc ccgctccttc ttcccgtccc ggccgggaag gcgccgggct
      241 tggcctctct ccccttcgtg gccgaaccat gagctaacag cccatgccgc ttcctccccg
      301 cccgaccccg cgtcctctcc ccggacccgg agggaggccg tggcccgcga gtcggctgct
      361 ccggcccgac cccactcgga gccccggggc ggcccgcaga gccaggagac gagccgggag
      421 cgccccgagg gccgaggctt gcgggccaca ctctcggagc cccggccgag cccgcgcgcc
      481 cccggtcccc gaagcgggcc cgggagggag agggggggag aggaggcccc ggcctcgccg
      541 gggatggaag ggatggaggc ggcggcccga cctgccggcg gcagccttca aggacccaaa
      601 atagggagca gaacagccag ctccatggag gtgacctcag ctgtggagag aagtggccct
      661 gagccacagc cggagaatgg acacctccca agacactggc cctgtcctcg agaagacaga
      721 acacacagcc tgatggcccc ccagcctcct ggggcacagg ggatacaggt ccaaggcccc
      781 tctgtgctgg agtccaaggt gagggccttg aaggagaaga tgacagcagg caaacagggg
      841 gcaagcctct gcctcacttc tcacgagcgg ccatccctca agaaacccaa atgcagacga
      901 gtcaaggtgg gtggaaccag gactccatca gaggggtctt ccctacctga tgccgtggtg
      961 gtccatcatg ctcagaaccc aaacaatggg ctgctggaca gcagcatcac tgaggaggag
     1021 tccgccagga acggggcccc cgggcctccc aggttgccgg cctctgggct ccagagctgg
     1081 aacaggagga gcccgtggcc tccagaagca gtacggacac tgcctgacca cgacagggct
     1141 atgccgccag ggcccagctc gttgcaagag agccccatgc acagagtcac tccaagccag
     1201 cctgagggct ctggtccttg taacaaaacc acccacaggc ccagcctgag gaaaggaagg
     1261 tcacaccccc tgcaggatgg tctcgtcaca caggaagacc tggacagctt gtctctgacg
     1321 tccgaggagg acttcgtccc caggccagcc ctgctggggg agctctggag agctggagac
     1381 ctgggggccc tgggcaccgg gggcagcacc ttgtccctgt ctgaccgcgt ggagaggaac
     1441 cgccttctgt tgcaggagat gctaagtgtt ggggggcagg gcccctccaa ggtgggaagc
     1501 ccagcctgga cttcatcccg ggacagagct gtgccagagc gactagcagg ggacgtggac
     1561 tgggactccg gcatctccct gcaggatgct gaccagagca ggtcctttag tcccaagccg
     1621 gagcccgtgc tgagccccag gcatgaggaa gccaagcatc tgcttcagcg agcccgcatg
     1681 aaggccagga cccggcccat ccgtgccagc cacgatattg tgcccaccct tgcccagggc
     1741 agccgagatg ggcggaaaag cccagccttg gacccgagga tgacccttgc ctgcagagac
     1801 aacctccaga acgggaacac aagtgactcc tccagcgggg agtccagcag cgggcagtgg
     1861 ccgaagcggg cctcctcccc gtcccacgtc cgctttgagg atgaatcagc ccgcgacgcc
     1921 gagtcccgct acctcgagcg gctgcagcag cgtcagcgcc aggtgctgag caccacgctg
     1981 cagccggcgg accagggccc cctgcgctcc aagcccgacc tcgccgacta cgtccacggg
     2041 ggctgccggc gccaggacgc aggcgcaggg tctctccacc cgctgctggg cgggctggag
     2101 ccccggggcc ttcccgcgcc gccgctcgct cagggcagcg agaggaggtg ccgagcctgc
     2161 ggccactgca tcgcccccga cccgagggtc ctccgggagc gcgaagccgc ctgcgggatg
     2221 gagggggcgt tggcgcagct ccgcagccct cggggcctgg gcgggcccct ccggctcttc
     2281 cctgcggagc ctggactcca caccgagtgg atccgggaga cgcacatcgg gggccaggcg
     2341 cgccccgagg aggtagactc ggccctggac agcacggaca cctccgacag ctgcaggacc
     2401 gacagtgagg aggccgggac ctcccagccc agtagggtcc gtggcagcag cccccgtctc
     2461 cgggcctcca gacctcgggg aggccaaagg ttgttccgaa aggctgaaat ggggccgctc
     2521 cggagccccc aggccccgca ctacctgcct gggctggagc tagtggaggt gttggatgag
     2581 gtgacagaag gcatgggaca gacgcctgag gggactttgc tccccagaga agatgctttc
     2641 tctaagcctc ttgtccagga ctctaagagg gcttccctgg ggtcccagcc tggaccaggg
     2701 ctggaaaatc actgggctca gcccgtggat tcccggacag cctatgccat cgcctcttcc
     2761 gtgaaggtgg gctcctcggg gccaggcaga caagcccagg ttgtagacag ccaagagtct
     2821 ctgggaactg actccctgaa tcagagccac acagagccct ctgcccccca ccaggcccag
     2881 cagccaaccg cttccctctc ccccgaaggc tgggtgccga cccctccctc ttcaaagaaa
     2941 accacctccc ctgtgtctca caggaaggca gccctggctg gactttgcag gccgggtgac
     3001 cagggagagc ctatggacac ctctgtgccg tcttccagaa gcctagttcc cagggcctgt
     3061 gagctcaccc ggccgcagcc ccagccccgc agcccctgtg tcacgcgccc cctgcgggcc
     3121 ccgtccacca gtcactgcga caacagcacg ccccaggggc tgcaggagcc ctggggagaa
     3181 gccatcctcg cgggcagtgg ggagaagggc acctacagcc agaagcctgc agtaccgccg
     3241 gaggaccatg gagatggagg actccagggc tgtctcacct cagcagctgt tggcaccatc
     3301 agctccatgg gcatcacctt ctccccggcc tcagaggaga cagagtccgg ccaggaacca
     3361 gagggcggcc tgcagaggac agagccgagt tctgtagggc gtgtgtcatc ccgagcattg
     3421 ccaggggtca atgtgggacc cagcctgccc tcagctgccc cttctgacaa gaacaagaaa
     3481 agcagcggca gcatctcctc caccctgggg ctgaaaaagt tcttcttggc cctgacaagt
     3541 cagggcacaa ggcccaagct gggcaagtcc cgcagctaca gtgtggagca gctgcagccc
     3601 cctgcgccca gcccggcttc acacaccagc gcccccaaaa tgaagagagc cccatcgtta
     3661 caatccctgc atccggtgtc accctctcgc caacgttgga aagctgcctc ttttcagaac
     3721 ctccattctc tgctgagtgg caaggtggac cggtccaacc tctacctggt aggggagcca
     3781 gggcatcaca atgcagctga caggccagcc aaggcgccgc cccggccctc cctcagcgtg
     3841 gaggacgtga gtgccccggg cctggctcgc gccgtgggcc gcatggtgga ggtgttcccg
     3901 gacggcacga gccagctgca gctacagcgc tccccggagg gcactttcgg cttctgtgtg
     3961 gcctctggga atggacgccg ggactcaggg ctctatgtgc aggagatggc tgatgagagc
     4021 acggccaagc tgtactcggg gctgctggga gtgggggatg agatcctcga ggtgaacggg
     4081 gccaaggttg caggactggg cttggctcac attagggagc tcctggccca cgcggagagc
     4141 ttgtcgatcc gtgtgctgag gcagaggcct gtcccacggt gacccagagg tgcctttgcc
     4201 ctcaccgtca cccccttgga aactctgaac caccccaggg ggtggctggg aatgcactac
     4261 ataaagctgc tttgtctact gaaaatgaac atggtggcac gtaacccctt gggccttggc
     4321 agggcttctg tgactggcca ctttagcaga gggaaggagc ctgtttgtgt attttgtttg
     4381 aggatgttaa tttatgcaga accggggaaa agatatgggt cttccgccct gaccaggcct
     4441 gaggtgttgt caacatcttc ctgcaccttt gttggcaggg ggaggggaga gattcagtgg
     4501 gtccttcggt tggtccctga gcatcgcctt acccccaggt cccctcccac actgtcaagg
     4561 gctcccccag cccctcccac tcaagagcca aagaaagtac tcagccatat tggccttgag
     4621 cccgcctttt tgagtctcat ttctcccagc tcccattcga cacctttgct ttttttccag
     4681 aaatggacaa agtgtcctgg agtaacagcc ttacagccat tgaccatata ttccaaaccc
     4741 aaaattagca catgtggtct ggtggtagaa catctgggag atgttatctg gtagtcagaa
     4801 tattaggaca ttctgggaaa tctttgtgat ataaggttga agaaacaaaa tgaaaccgag
     4861 accaatttca gggaagtgca gctgtggcca gtgggaccgg ccagaccagc cctgcccccc
     4921 accacagcct ggccatgagg acctctgtct tccttctcct gtgaccttgg acacgggctg
     4981 cagctggtgc caagctgtcc ccagccacaa gctctctgcc cagactccct gagggcagct
     5041 gtaggtgggc cgctggcagg gagatggcag ggcacgagca gcaggatggg ctgtcctgcc
     5101 tgggcacatc cactgcccaa agggttggga ctctctggga gtaggtggct gtgtgtcagt
     5161 cttaaattat taaagaacaa cgctgaaact ta
//
LOCUS       XM_032652566            5458 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1614 ortholog (KIAA1614), transcript
            variant X2, mRNA.
ACCESSION   XM_032652566
VERSION     XM_032652566.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5458
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5458
                     /gene="KIAA1614"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764196"
     CDS             891..4448
                     /gene="KIAA1614"
                     /codon_start=1
                     /product="uncharacterized protein KIAA1614 homolog isoform
                     X2"
                     /protein_id="XP_032508457.1"
                     /db_xref="GeneID:116764196"
                     /translation="MEVTSAVERSGPEPQPENGHLPRHWPCPREDRTHSLMAPQPPGA
                     QGIQVQGPSVLESKVRALKEKMTAGKQGASLCLTSHERPSLKKPKCRRVKVGGTRTPS
                     EGSSLPDAVVVHHAQNPNNGLLDSSITEEESARNGAPGPPRLPASGLQSWNRRSPWPP
                     EAVRTLPDHDRAMPPGPSSLQESPMHRVTPSQPEGSGPCNKTTHRPSLRKGRSHPLQD
                     GLVTQEDLDSLSLTSEEDFVPRPALLGELWRAGDLGALGTGGSTLSLSDRVERNRLLL
                     QEMLSVGGQGPSKVGSPAWTSSRDRAVPERLAGDVDWDSGISLQDADQSRSFSPKPEP
                     VLSPRHEEAKHLLQRARMKARTRPIRASHDIVPTLAQGSRDGRKSPALDPRMTLACRD
                     NLQNGNTSDSSSGESSSGQWPKRASSPSHVRFEDESARDAESRYLERLQQRQRQVLST
                     TLQPADQGPLRSKPDLADYVHGGCRRQDAGAGSLHPLLGGLEPRGLPAPPLAQGSERR
                     CRACGHCIAPDPRVLREREAACGMEGALAQLRSPRGLGGPLRLFPAEPGLHTEWIRET
                     HIGGQARPEEVDSALDSTDTSDSCRTDSEEAGTSQPSRVRGSSPRLRASRPRGGQRLF
                     RKAEMGPLRSPQAPHYLPGLELVEVLDEVTEGMGQTPEGTLLPREDAFSKPLVQDSKR
                     ASLGSQPGPGLENHWAQPVDSRTAYAIASSVKVGSSGPGRQAQVVDSQESLGTDSLNQ
                     SHTEPSAPHQAQQPTASLSPEGWVPTPPSSKKTTSPVSHRKAALAGLCRPGDQGEPMD
                     TSVPSSRSLVPRACELTRPQPQPRSPCVTRPLRAPSTSHCDNSTPQGLQEPWGEAILA
                     GSGEKGTYSQKPAVPPEDHGDGGLQGCLTSAAVGTISSMGITFSPASEETESGQEPEG
                     GLQRTEPSSVGRVSSRALPGVNVGPSLPSAAPSDKNKKSSGSISSTLGLKKFFLALTS
                     QGTRPKLGKSRSYSVEQLQPPAPSPASHTSAPKMKRAPSLQSLHPVSPSRQRWKAASF
                     QNLHSLLSGKVDRSNLYLVGEPGHHNAADRPAKAPPRPSLSVEDVSAPGLARAVGRMV
                     EVFPDGTSQLQLQRSPEGTFGFCVASGNGRRDSGLYVQEMADESTAKLYSGLLGVGDE
                     ILEVNGAKVAGLGLAHIRELLAHAESLSIRVLRQRPVPR"
     misc_feature    1866..2240
                     /gene="KIAA1614"
                     /note="Domain of unknown function (DUF4685); Region:
                     DUF4685; pfam15737"
                     /db_xref="CDD:464834"
     misc_feature    <3120..3962
                     /gene="KIAA1614"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    4188..4427
                     /gene="KIAA1614"
                     /note="canonical PDZ domain; Region: PDZ_canonical;
                     cl49608"
                     /db_xref="CDD:483948"
     misc_feature    order(4209..4229,4266..4268,4275..4277,4368..4370,
                     4380..4382,4389..4394)
                     /gene="KIAA1614"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467153"
ORIGIN      
        1 ccccgtccga gtccccaaac tcgcgggctt gctcgtcgct tagacgtctg gagagcatca
       61 ctcgccgccg ccgggagggg cagctccgca gggcgcgggc ggccgggacc ggggccgcgg
      121 cgagcgcgga gggcggcggg gcagggtggg ggccggggcc gctcctctag ccccttccgc
      181 cgcccctcct ttctgctctc ccgctccttc ttcccgtccc ggccgggaag gcgccgggct
      241 tggcctctct ccccttcgtg gccgaaccat gagctaacag cccatgccgc ttcctccccg
      301 cccgaccccg cgtcctctcc ccggacccgg agggaggccg tggcccgcga gtcggctgct
      361 ccggcccgac cccactcgga gccccggggc ggcccgcaga gccaggagac gagccgggag
      421 cgccccgagg gccgaggctt gcgggccaca ctctcggagc cccggccgag cccgcgcgcc
      481 cccggtcccc gaagcgggcc cgggagggag agggggggag aggaggcccc ggcctcgccg
      541 gggatggaag ggatggaggc ggcggcccga cctgccggcg gcagccttca cgtctccggc
      601 ttagagaagt acagcacttg ggccgtagac ttcggtggtg ccgagccgca caagtcgata
      661 cccactgttc cccaggggaa ggtcgcatcc ttccaggtct ccggagatgg atgatctctg
      721 gaatgctgtt cgaatttacc cgaaagaaag ttcttgtaat gtgactgaaa ttgctcccat
      781 taccttcacg tcccctgctt tctggattga accttagaag agaggaacgg gtggccgggc
      841 cgccaagaca aagctgagga cccaaaatag ggagcagaac agccagctcc atggaggtga
      901 cctcagctgt ggagagaagt ggccctgagc cacagccgga gaatggacac ctcccaagac
      961 actggccctg tcctcgagaa gacagaacac acagcctgat ggccccccag cctcctgggg
     1021 cacaggggat acaggtccaa ggcccctctg tgctggagtc caaggtgagg gccttgaagg
     1081 agaagatgac agcaggcaaa cagggggcaa gcctctgcct cacttctcac gagcggccat
     1141 ccctcaagaa acccaaatgc agacgagtca aggtgggtgg aaccaggact ccatcagagg
     1201 ggtcttccct acctgatgcc gtggtggtcc atcatgctca gaacccaaac aatgggctgc
     1261 tggacagcag catcactgag gaggagtccg ccaggaacgg ggcccccggg cctcccaggt
     1321 tgccggcctc tgggctccag agctggaaca ggaggagccc gtggcctcca gaagcagtac
     1381 ggacactgcc tgaccacgac agggctatgc cgccagggcc cagctcgttg caagagagcc
     1441 ccatgcacag agtcactcca agccagcctg agggctctgg tccttgtaac aaaaccaccc
     1501 acaggcccag cctgaggaaa ggaaggtcac accccctgca ggatggtctc gtcacacagg
     1561 aagacctgga cagcttgtct ctgacgtccg aggaggactt cgtccccagg ccagccctgc
     1621 tgggggagct ctggagagct ggagacctgg gggccctggg caccgggggc agcaccttgt
     1681 ccctgtctga ccgcgtggag aggaaccgcc ttctgttgca ggagatgcta agtgttgggg
     1741 ggcagggccc ctccaaggtg ggaagcccag cctggacttc atcccgggac agagctgtgc
     1801 cagagcgact agcaggggac gtggactggg actccggcat ctccctgcag gatgctgacc
     1861 agagcaggtc ctttagtccc aagccggagc ccgtgctgag ccccaggcat gaggaagcca
     1921 agcatctgct tcagcgagcc cgcatgaagg ccaggacccg gcccatccgt gccagccacg
     1981 atattgtgcc cacccttgcc cagggcagcc gagatgggcg gaaaagccca gccttggacc
     2041 cgaggatgac ccttgcctgc agagacaacc tccagaacgg gaacacaagt gactcctcca
     2101 gcggggagtc cagcagcggg cagtggccga agcgggcctc ctccccgtcc cacgtccgct
     2161 ttgaggatga atcagcccgc gacgccgagt cccgctacct cgagcggctg cagcagcgtc
     2221 agcgccaggt gctgagcacc acgctgcagc cggcggacca gggccccctg cgctccaagc
     2281 ccgacctcgc cgactacgtc cacgggggct gccggcgcca ggacgcaggc gcagggtctc
     2341 tccacccgct gctgggcggg ctggagcccc ggggccttcc cgcgccgccg ctcgctcagg
     2401 gcagcgagag gaggtgccga gcctgcggcc actgcatcgc ccccgacccg agggtcctcc
     2461 gggagcgcga agccgcctgc gggatggagg gggcgttggc gcagctccgc agccctcggg
     2521 gcctgggcgg gcccctccgg ctcttccctg cggagcctgg actccacacc gagtggatcc
     2581 gggagacgca catcgggggc caggcgcgcc ccgaggaggt agactcggcc ctggacagca
     2641 cggacacctc cgacagctgc aggaccgaca gtgaggaggc cgggacctcc cagcccagta
     2701 gggtccgtgg cagcagcccc cgtctccggg cctccagacc tcggggaggc caaaggttgt
     2761 tccgaaaggc tgaaatgggg ccgctccgga gcccccaggc cccgcactac ctgcctgggc
     2821 tggagctagt ggaggtgttg gatgaggtga cagaaggcat gggacagacg cctgagggga
     2881 ctttgctccc cagagaagat gctttctcta agcctcttgt ccaggactct aagagggctt
     2941 ccctggggtc ccagcctgga ccagggctgg aaaatcactg ggctcagccc gtggattccc
     3001 ggacagccta tgccatcgcc tcttccgtga aggtgggctc ctcggggcca ggcagacaag
     3061 cccaggttgt agacagccaa gagtctctgg gaactgactc cctgaatcag agccacacag
     3121 agccctctgc cccccaccag gcccagcagc caaccgcttc cctctccccc gaaggctggg
     3181 tgccgacccc tccctcttca aagaaaacca cctcccctgt gtctcacagg aaggcagccc
     3241 tggctggact ttgcaggccg ggtgaccagg gagagcctat ggacacctct gtgccgtctt
     3301 ccagaagcct agttcccagg gcctgtgagc tcacccggcc gcagccccag ccccgcagcc
     3361 cctgtgtcac gcgccccctg cgggccccgt ccaccagtca ctgcgacaac agcacgcccc
     3421 aggggctgca ggagccctgg ggagaagcca tcctcgcggg cagtggggag aagggcacct
     3481 acagccagaa gcctgcagta ccgccggagg accatggaga tggaggactc cagggctgtc
     3541 tcacctcagc agctgttggc accatcagct ccatgggcat caccttctcc ccggcctcag
     3601 aggagacaga gtccggccag gaaccagagg gcggcctgca gaggacagag ccgagttctg
     3661 tagggcgtgt gtcatcccga gcattgccag gggtcaatgt gggacccagc ctgccctcag
     3721 ctgccccttc tgacaagaac aagaaaagca gcggcagcat ctcctccacc ctggggctga
     3781 aaaagttctt cttggccctg acaagtcagg gcacaaggcc caagctgggc aagtcccgca
     3841 gctacagtgt ggagcagctg cagccccctg cgcccagccc ggcttcacac accagcgccc
     3901 ccaaaatgaa gagagcccca tcgttacaat ccctgcatcc ggtgtcaccc tctcgccaac
     3961 gttggaaagc tgcctctttt cagaacctcc attctctgct gagtggcaag gtggaccggt
     4021 ccaacctcta cctggtaggg gagccagggc atcacaatgc agctgacagg ccagccaagg
     4081 cgccgccccg gccctccctc agcgtggagg acgtgagtgc cccgggcctg gctcgcgccg
     4141 tgggccgcat ggtggaggtg ttcccggacg gcacgagcca gctgcagcta cagcgctccc
     4201 cggagggcac tttcggcttc tgtgtggcct ctgggaatgg acgccgggac tcagggctct
     4261 atgtgcagga gatggctgat gagagcacgg ccaagctgta ctcggggctg ctgggagtgg
     4321 gggatgagat cctcgaggtg aacggggcca aggttgcagg actgggcttg gctcacatta
     4381 gggagctcct ggcccacgcg gagagcttgt cgatccgtgt gctgaggcag aggcctgtcc
     4441 cacggtgacc cagaggtgcc tttgccctca ccgtcacccc cttggaaact ctgaaccacc
     4501 ccagggggtg gctgggaatg cactacataa agctgctttg tctactgaaa atgaacatgg
     4561 tggcacgtaa ccccttgggc cttggcaggg cttctgtgac tggccacttt agcagaggga
     4621 aggagcctgt ttgtgtattt tgtttgagga tgttaattta tgcagaaccg gggaaaagat
     4681 atgggtcttc cgccctgacc aggcctgagg tgttgtcaac atcttcctgc acctttgttg
     4741 gcagggggag gggagagatt cagtgggtcc ttcggttggt ccctgagcat cgccttaccc
     4801 ccaggtcccc tcccacactg tcaagggctc ccccagcccc tcccactcaa gagccaaaga
     4861 aagtactcag ccatattggc cttgagcccg cctttttgag tctcatttct cccagctccc
     4921 attcgacacc tttgcttttt ttccagaaat ggacaaagtg tcctggagta acagccttac
     4981 agccattgac catatattcc aaacccaaaa ttagcacatg tggtctggtg gtagaacatc
     5041 tgggagatgt tatctggtag tcagaatatt aggacattct gggaaatctt tgtgatataa
     5101 ggttgaagaa acaaaatgaa accgagacca atttcaggga agtgcagctg tggccagtgg
     5161 gaccggccag accagccctg ccccccacca cagcctggcc atgaggacct ctgtcttcct
     5221 tctcctgtga ccttggacac gggctgcagc tggtgccaag ctgtccccag ccacaagctc
     5281 tctgcccaga ctccctgagg gcagctgtag gtgggccgct ggcagggaga tggcagggca
     5341 cgagcagcag gatgggctgt cctgcctggg cacatccact gcccaaaggg ttgggactct
     5401 ctgggagtag gtggctgtgt gtcagtctta aattattaaa gaacaacgct gaaactta
//
LOCUS       XM_032652576            4902 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1614 ortholog (KIAA1614), transcript
            variant X3, mRNA.
ACCESSION   XM_032652576
VERSION     XM_032652576.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4902
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4902
                     /gene="KIAA1614"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764196"
     CDS             335..3892
                     /gene="KIAA1614"
                     /codon_start=1
                     /product="uncharacterized protein KIAA1614 homolog isoform
                     X2"
                     /protein_id="XP_032508467.1"
                     /db_xref="GeneID:116764196"
                     /translation="MEVTSAVERSGPEPQPENGHLPRHWPCPREDRTHSLMAPQPPGA
                     QGIQVQGPSVLESKVRALKEKMTAGKQGASLCLTSHERPSLKKPKCRRVKVGGTRTPS
                     EGSSLPDAVVVHHAQNPNNGLLDSSITEEESARNGAPGPPRLPASGLQSWNRRSPWPP
                     EAVRTLPDHDRAMPPGPSSLQESPMHRVTPSQPEGSGPCNKTTHRPSLRKGRSHPLQD
                     GLVTQEDLDSLSLTSEEDFVPRPALLGELWRAGDLGALGTGGSTLSLSDRVERNRLLL
                     QEMLSVGGQGPSKVGSPAWTSSRDRAVPERLAGDVDWDSGISLQDADQSRSFSPKPEP
                     VLSPRHEEAKHLLQRARMKARTRPIRASHDIVPTLAQGSRDGRKSPALDPRMTLACRD
                     NLQNGNTSDSSSGESSSGQWPKRASSPSHVRFEDESARDAESRYLERLQQRQRQVLST
                     TLQPADQGPLRSKPDLADYVHGGCRRQDAGAGSLHPLLGGLEPRGLPAPPLAQGSERR
                     CRACGHCIAPDPRVLREREAACGMEGALAQLRSPRGLGGPLRLFPAEPGLHTEWIRET
                     HIGGQARPEEVDSALDSTDTSDSCRTDSEEAGTSQPSRVRGSSPRLRASRPRGGQRLF
                     RKAEMGPLRSPQAPHYLPGLELVEVLDEVTEGMGQTPEGTLLPREDAFSKPLVQDSKR
                     ASLGSQPGPGLENHWAQPVDSRTAYAIASSVKVGSSGPGRQAQVVDSQESLGTDSLNQ
                     SHTEPSAPHQAQQPTASLSPEGWVPTPPSSKKTTSPVSHRKAALAGLCRPGDQGEPMD
                     TSVPSSRSLVPRACELTRPQPQPRSPCVTRPLRAPSTSHCDNSTPQGLQEPWGEAILA
                     GSGEKGTYSQKPAVPPEDHGDGGLQGCLTSAAVGTISSMGITFSPASEETESGQEPEG
                     GLQRTEPSSVGRVSSRALPGVNVGPSLPSAAPSDKNKKSSGSISSTLGLKKFFLALTS
                     QGTRPKLGKSRSYSVEQLQPPAPSPASHTSAPKMKRAPSLQSLHPVSPSRQRWKAASF
                     QNLHSLLSGKVDRSNLYLVGEPGHHNAADRPAKAPPRPSLSVEDVSAPGLARAVGRMV
                     EVFPDGTSQLQLQRSPEGTFGFCVASGNGRRDSGLYVQEMADESTAKLYSGLLGVGDE
                     ILEVNGAKVAGLGLAHIRELLAHAESLSIRVLRQRPVPR"
     misc_feature    1310..1684
                     /gene="KIAA1614"
                     /note="Domain of unknown function (DUF4685); Region:
                     DUF4685; pfam15737"
                     /db_xref="CDD:464834"
     misc_feature    <2564..3406
                     /gene="KIAA1614"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3632..3871
                     /gene="KIAA1614"
                     /note="canonical PDZ domain; Region: PDZ_canonical;
                     cl49608"
                     /db_xref="CDD:483948"
     misc_feature    order(3653..3673,3710..3712,3719..3721,3812..3814,
                     3824..3826,3833..3838)
                     /gene="KIAA1614"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467153"
ORIGIN      
        1 ggaggcccgt ccgtcacgtc cgtcttcatt tcagcgtctc cggcttagag aagtacagca
       61 cttgggccgt agacttcggt ggtgccgagc cgcacaagtc gatacccact gttccccagg
      121 ggaaggtcgc atccttccag gtctccggag atggatgatc tctggaatgc tgttcgaatt
      181 tacccgaaag aaagttcttg taatgtgact gaaattgctc ccattacctt cacgtcccct
      241 gctttctgga ttgaacctta gaagagagga acgggtggcc gggccgccaa gacaaagctg
      301 aggacccaaa atagggagca gaacagccag ctccatggag gtgacctcag ctgtggagag
      361 aagtggccct gagccacagc cggagaatgg acacctccca agacactggc cctgtcctcg
      421 agaagacaga acacacagcc tgatggcccc ccagcctcct ggggcacagg ggatacaggt
      481 ccaaggcccc tctgtgctgg agtccaaggt gagggccttg aaggagaaga tgacagcagg
      541 caaacagggg gcaagcctct gcctcacttc tcacgagcgg ccatccctca agaaacccaa
      601 atgcagacga gtcaaggtgg gtggaaccag gactccatca gaggggtctt ccctacctga
      661 tgccgtggtg gtccatcatg ctcagaaccc aaacaatggg ctgctggaca gcagcatcac
      721 tgaggaggag tccgccagga acggggcccc cgggcctccc aggttgccgg cctctgggct
      781 ccagagctgg aacaggagga gcccgtggcc tccagaagca gtacggacac tgcctgacca
      841 cgacagggct atgccgccag ggcccagctc gttgcaagag agccccatgc acagagtcac
      901 tccaagccag cctgagggct ctggtccttg taacaaaacc acccacaggc ccagcctgag
      961 gaaaggaagg tcacaccccc tgcaggatgg tctcgtcaca caggaagacc tggacagctt
     1021 gtctctgacg tccgaggagg acttcgtccc caggccagcc ctgctggggg agctctggag
     1081 agctggagac ctgggggccc tgggcaccgg gggcagcacc ttgtccctgt ctgaccgcgt
     1141 ggagaggaac cgccttctgt tgcaggagat gctaagtgtt ggggggcagg gcccctccaa
     1201 ggtgggaagc ccagcctgga cttcatcccg ggacagagct gtgccagagc gactagcagg
     1261 ggacgtggac tgggactccg gcatctccct gcaggatgct gaccagagca ggtcctttag
     1321 tcccaagccg gagcccgtgc tgagccccag gcatgaggaa gccaagcatc tgcttcagcg
     1381 agcccgcatg aaggccagga cccggcccat ccgtgccagc cacgatattg tgcccaccct
     1441 tgcccagggc agccgagatg ggcggaaaag cccagccttg gacccgagga tgacccttgc
     1501 ctgcagagac aacctccaga acgggaacac aagtgactcc tccagcgggg agtccagcag
     1561 cgggcagtgg ccgaagcggg cctcctcccc gtcccacgtc cgctttgagg atgaatcagc
     1621 ccgcgacgcc gagtcccgct acctcgagcg gctgcagcag cgtcagcgcc aggtgctgag
     1681 caccacgctg cagccggcgg accagggccc cctgcgctcc aagcccgacc tcgccgacta
     1741 cgtccacggg ggctgccggc gccaggacgc aggcgcaggg tctctccacc cgctgctggg
     1801 cgggctggag ccccggggcc ttcccgcgcc gccgctcgct cagggcagcg agaggaggtg
     1861 ccgagcctgc ggccactgca tcgcccccga cccgagggtc ctccgggagc gcgaagccgc
     1921 ctgcgggatg gagggggcgt tggcgcagct ccgcagccct cggggcctgg gcgggcccct
     1981 ccggctcttc cctgcggagc ctggactcca caccgagtgg atccgggaga cgcacatcgg
     2041 gggccaggcg cgccccgagg aggtagactc ggccctggac agcacggaca cctccgacag
     2101 ctgcaggacc gacagtgagg aggccgggac ctcccagccc agtagggtcc gtggcagcag
     2161 cccccgtctc cgggcctcca gacctcgggg aggccaaagg ttgttccgaa aggctgaaat
     2221 ggggccgctc cggagccccc aggccccgca ctacctgcct gggctggagc tagtggaggt
     2281 gttggatgag gtgacagaag gcatgggaca gacgcctgag gggactttgc tccccagaga
     2341 agatgctttc tctaagcctc ttgtccagga ctctaagagg gcttccctgg ggtcccagcc
     2401 tggaccaggg ctggaaaatc actgggctca gcccgtggat tcccggacag cctatgccat
     2461 cgcctcttcc gtgaaggtgg gctcctcggg gccaggcaga caagcccagg ttgtagacag
     2521 ccaagagtct ctgggaactg actccctgaa tcagagccac acagagccct ctgcccccca
     2581 ccaggcccag cagccaaccg cttccctctc ccccgaaggc tgggtgccga cccctccctc
     2641 ttcaaagaaa accacctccc ctgtgtctca caggaaggca gccctggctg gactttgcag
     2701 gccgggtgac cagggagagc ctatggacac ctctgtgccg tcttccagaa gcctagttcc
     2761 cagggcctgt gagctcaccc ggccgcagcc ccagccccgc agcccctgtg tcacgcgccc
     2821 cctgcgggcc ccgtccacca gtcactgcga caacagcacg ccccaggggc tgcaggagcc
     2881 ctggggagaa gccatcctcg cgggcagtgg ggagaagggc acctacagcc agaagcctgc
     2941 agtaccgccg gaggaccatg gagatggagg actccagggc tgtctcacct cagcagctgt
     3001 tggcaccatc agctccatgg gcatcacctt ctccccggcc tcagaggaga cagagtccgg
     3061 ccaggaacca gagggcggcc tgcagaggac agagccgagt tctgtagggc gtgtgtcatc
     3121 ccgagcattg ccaggggtca atgtgggacc cagcctgccc tcagctgccc cttctgacaa
     3181 gaacaagaaa agcagcggca gcatctcctc caccctgggg ctgaaaaagt tcttcttggc
     3241 cctgacaagt cagggcacaa ggcccaagct gggcaagtcc cgcagctaca gtgtggagca
     3301 gctgcagccc cctgcgccca gcccggcttc acacaccagc gcccccaaaa tgaagagagc
     3361 cccatcgtta caatccctgc atccggtgtc accctctcgc caacgttgga aagctgcctc
     3421 ttttcagaac ctccattctc tgctgagtgg caaggtggac cggtccaacc tctacctggt
     3481 aggggagcca gggcatcaca atgcagctga caggccagcc aaggcgccgc cccggccctc
     3541 cctcagcgtg gaggacgtga gtgccccggg cctggctcgc gccgtgggcc gcatggtgga
     3601 ggtgttcccg gacggcacga gccagctgca gctacagcgc tccccggagg gcactttcgg
     3661 cttctgtgtg gcctctggga atggacgccg ggactcaggg ctctatgtgc aggagatggc
     3721 tgatgagagc acggccaagc tgtactcggg gctgctggga gtgggggatg agatcctcga
     3781 ggtgaacggg gccaaggttg caggactggg cttggctcac attagggagc tcctggccca
     3841 cgcggagagc ttgtcgatcc gtgtgctgag gcagaggcct gtcccacggt gacccagagg
     3901 tgcctttgcc ctcaccgtca cccccttgga aactctgaac caccccaggg ggtggctggg
     3961 aatgcactac ataaagctgc tttgtctact gaaaatgaac atggtggcac gtaacccctt
     4021 gggccttggc agggcttctg tgactggcca ctttagcaga gggaaggagc ctgtttgtgt
     4081 attttgtttg aggatgttaa tttatgcaga accggggaaa agatatgggt cttccgccct
     4141 gaccaggcct gaggtgttgt caacatcttc ctgcaccttt gttggcaggg ggaggggaga
     4201 gattcagtgg gtccttcggt tggtccctga gcatcgcctt acccccaggt cccctcccac
     4261 actgtcaagg gctcccccag cccctcccac tcaagagcca aagaaagtac tcagccatat
     4321 tggccttgag cccgcctttt tgagtctcat ttctcccagc tcccattcga cacctttgct
     4381 ttttttccag aaatggacaa agtgtcctgg agtaacagcc ttacagccat tgaccatata
     4441 ttccaaaccc aaaattagca catgtggtct ggtggtagaa catctgggag atgttatctg
     4501 gtagtcagaa tattaggaca ttctgggaaa tctttgtgat ataaggttga agaaacaaaa
     4561 tgaaaccgag accaatttca gggaagtgca gctgtggcca gtgggaccgg ccagaccagc
     4621 cctgcccccc accacagcct ggccatgagg acctctgtct tccttctcct gtgaccttgg
     4681 acacgggctg cagctggtgc caagctgtcc ccagccacaa gctctctgcc cagactccct
     4741 gagggcagct gtaggtgggc cgctggcagg gagatggcag ggcacgagca gcaggatggg
     4801 ctgtcctgcc tgggcacatc cactgcccaa agggttggga ctctctggga gtaggtggct
     4861 gtgtgtcagt cttaaattat taaagaacaa cgctgaaact ta
//
LOCUS       XM_032652586            4715 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1614 ortholog (KIAA1614), transcript
            variant X4, mRNA.
ACCESSION   XM_032652586
VERSION     XM_032652586.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4715
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4715
                     /gene="KIAA1614"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764196"
     CDS             148..3705
                     /gene="KIAA1614"
                     /codon_start=1
                     /product="uncharacterized protein KIAA1614 homolog isoform
                     X2"
                     /protein_id="XP_032508477.1"
                     /db_xref="GeneID:116764196"
                     /translation="MEVTSAVERSGPEPQPENGHLPRHWPCPREDRTHSLMAPQPPGA
                     QGIQVQGPSVLESKVRALKEKMTAGKQGASLCLTSHERPSLKKPKCRRVKVGGTRTPS
                     EGSSLPDAVVVHHAQNPNNGLLDSSITEEESARNGAPGPPRLPASGLQSWNRRSPWPP
                     EAVRTLPDHDRAMPPGPSSLQESPMHRVTPSQPEGSGPCNKTTHRPSLRKGRSHPLQD
                     GLVTQEDLDSLSLTSEEDFVPRPALLGELWRAGDLGALGTGGSTLSLSDRVERNRLLL
                     QEMLSVGGQGPSKVGSPAWTSSRDRAVPERLAGDVDWDSGISLQDADQSRSFSPKPEP
                     VLSPRHEEAKHLLQRARMKARTRPIRASHDIVPTLAQGSRDGRKSPALDPRMTLACRD
                     NLQNGNTSDSSSGESSSGQWPKRASSPSHVRFEDESARDAESRYLERLQQRQRQVLST
                     TLQPADQGPLRSKPDLADYVHGGCRRQDAGAGSLHPLLGGLEPRGLPAPPLAQGSERR
                     CRACGHCIAPDPRVLREREAACGMEGALAQLRSPRGLGGPLRLFPAEPGLHTEWIRET
                     HIGGQARPEEVDSALDSTDTSDSCRTDSEEAGTSQPSRVRGSSPRLRASRPRGGQRLF
                     RKAEMGPLRSPQAPHYLPGLELVEVLDEVTEGMGQTPEGTLLPREDAFSKPLVQDSKR
                     ASLGSQPGPGLENHWAQPVDSRTAYAIASSVKVGSSGPGRQAQVVDSQESLGTDSLNQ
                     SHTEPSAPHQAQQPTASLSPEGWVPTPPSSKKTTSPVSHRKAALAGLCRPGDQGEPMD
                     TSVPSSRSLVPRACELTRPQPQPRSPCVTRPLRAPSTSHCDNSTPQGLQEPWGEAILA
                     GSGEKGTYSQKPAVPPEDHGDGGLQGCLTSAAVGTISSMGITFSPASEETESGQEPEG
                     GLQRTEPSSVGRVSSRALPGVNVGPSLPSAAPSDKNKKSSGSISSTLGLKKFFLALTS
                     QGTRPKLGKSRSYSVEQLQPPAPSPASHTSAPKMKRAPSLQSLHPVSPSRQRWKAASF
                     QNLHSLLSGKVDRSNLYLVGEPGHHNAADRPAKAPPRPSLSVEDVSAPGLARAVGRMV
                     EVFPDGTSQLQLQRSPEGTFGFCVASGNGRRDSGLYVQEMADESTAKLYSGLLGVGDE
                     ILEVNGAKVAGLGLAHIRELLAHAESLSIRVLRQRPVPR"
     misc_feature    1123..1497
                     /gene="KIAA1614"
                     /note="Domain of unknown function (DUF4685); Region:
                     DUF4685; pfam15737"
                     /db_xref="CDD:464834"
     misc_feature    <2377..3219
                     /gene="KIAA1614"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3445..3684
                     /gene="KIAA1614"
                     /note="canonical PDZ domain; Region: PDZ_canonical;
                     cl49608"
                     /db_xref="CDD:483948"
     misc_feature    order(3466..3486,3523..3525,3532..3534,3625..3627,
                     3637..3639,3646..3651)
                     /gene="KIAA1614"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467153"
ORIGIN      
        1 gtggtgtttc cgcagctttg gctcgcgtgg agccgcgtcc cacggccgcg ctctcccaga
       61 agcctcggct gcaggcgctc gccgggcgga ctaggctacc cgggccgcaa gagaggaccc
      121 aaaataggga gcagaacagc cagctccatg gaggtgacct cagctgtgga gagaagtggc
      181 cctgagccac agccggagaa tggacacctc ccaagacact ggccctgtcc tcgagaagac
      241 agaacacaca gcctgatggc cccccagcct cctggggcac aggggataca ggtccaaggc
      301 ccctctgtgc tggagtccaa ggtgagggcc ttgaaggaga agatgacagc aggcaaacag
      361 ggggcaagcc tctgcctcac ttctcacgag cggccatccc tcaagaaacc caaatgcaga
      421 cgagtcaagg tgggtggaac caggactcca tcagaggggt cttccctacc tgatgccgtg
      481 gtggtccatc atgctcagaa cccaaacaat gggctgctgg acagcagcat cactgaggag
      541 gagtccgcca ggaacggggc ccccgggcct cccaggttgc cggcctctgg gctccagagc
      601 tggaacagga ggagcccgtg gcctccagaa gcagtacgga cactgcctga ccacgacagg
      661 gctatgccgc cagggcccag ctcgttgcaa gagagcccca tgcacagagt cactccaagc
      721 cagcctgagg gctctggtcc ttgtaacaaa accacccaca ggcccagcct gaggaaagga
      781 aggtcacacc ccctgcagga tggtctcgtc acacaggaag acctggacag cttgtctctg
      841 acgtccgagg aggacttcgt ccccaggcca gccctgctgg gggagctctg gagagctgga
      901 gacctggggg ccctgggcac cgggggcagc accttgtccc tgtctgaccg cgtggagagg
      961 aaccgccttc tgttgcagga gatgctaagt gttggggggc agggcccctc caaggtggga
     1021 agcccagcct ggacttcatc ccgggacaga gctgtgccag agcgactagc aggggacgtg
     1081 gactgggact ccggcatctc cctgcaggat gctgaccaga gcaggtcctt tagtcccaag
     1141 ccggagcccg tgctgagccc caggcatgag gaagccaagc atctgcttca gcgagcccgc
     1201 atgaaggcca ggacccggcc catccgtgcc agccacgata ttgtgcccac ccttgcccag
     1261 ggcagccgag atgggcggaa aagcccagcc ttggacccga ggatgaccct tgcctgcaga
     1321 gacaacctcc agaacgggaa cacaagtgac tcctccagcg gggagtccag cagcgggcag
     1381 tggccgaagc gggcctcctc cccgtcccac gtccgctttg aggatgaatc agcccgcgac
     1441 gccgagtccc gctacctcga gcggctgcag cagcgtcagc gccaggtgct gagcaccacg
     1501 ctgcagccgg cggaccaggg ccccctgcgc tccaagcccg acctcgccga ctacgtccac
     1561 gggggctgcc ggcgccagga cgcaggcgca gggtctctcc acccgctgct gggcgggctg
     1621 gagccccggg gccttcccgc gccgccgctc gctcagggca gcgagaggag gtgccgagcc
     1681 tgcggccact gcatcgcccc cgacccgagg gtcctccggg agcgcgaagc cgcctgcggg
     1741 atggaggggg cgttggcgca gctccgcagc cctcggggcc tgggcgggcc cctccggctc
     1801 ttccctgcgg agcctggact ccacaccgag tggatccggg agacgcacat cgggggccag
     1861 gcgcgccccg aggaggtaga ctcggccctg gacagcacgg acacctccga cagctgcagg
     1921 accgacagtg aggaggccgg gacctcccag cccagtaggg tccgtggcag cagcccccgt
     1981 ctccgggcct ccagacctcg gggaggccaa aggttgttcc gaaaggctga aatggggccg
     2041 ctccggagcc cccaggcccc gcactacctg cctgggctgg agctagtgga ggtgttggat
     2101 gaggtgacag aaggcatggg acagacgcct gaggggactt tgctccccag agaagatgct
     2161 ttctctaagc ctcttgtcca ggactctaag agggcttccc tggggtccca gcctggacca
     2221 gggctggaaa atcactgggc tcagcccgtg gattcccgga cagcctatgc catcgcctct
     2281 tccgtgaagg tgggctcctc ggggccaggc agacaagccc aggttgtaga cagccaagag
     2341 tctctgggaa ctgactccct gaatcagagc cacacagagc cctctgcccc ccaccaggcc
     2401 cagcagccaa ccgcttccct ctcccccgaa ggctgggtgc cgacccctcc ctcttcaaag
     2461 aaaaccacct cccctgtgtc tcacaggaag gcagccctgg ctggactttg caggccgggt
     2521 gaccagggag agcctatgga cacctctgtg ccgtcttcca gaagcctagt tcccagggcc
     2581 tgtgagctca cccggccgca gccccagccc cgcagcccct gtgtcacgcg ccccctgcgg
     2641 gccccgtcca ccagtcactg cgacaacagc acgccccagg ggctgcagga gccctgggga
     2701 gaagccatcc tcgcgggcag tggggagaag ggcacctaca gccagaagcc tgcagtaccg
     2761 ccggaggacc atggagatgg aggactccag ggctgtctca cctcagcagc tgttggcacc
     2821 atcagctcca tgggcatcac cttctccccg gcctcagagg agacagagtc cggccaggaa
     2881 ccagagggcg gcctgcagag gacagagccg agttctgtag ggcgtgtgtc atcccgagca
     2941 ttgccagggg tcaatgtggg acccagcctg ccctcagctg ccccttctga caagaacaag
     3001 aaaagcagcg gcagcatctc ctccaccctg gggctgaaaa agttcttctt ggccctgaca
     3061 agtcagggca caaggcccaa gctgggcaag tcccgcagct acagtgtgga gcagctgcag
     3121 ccccctgcgc ccagcccggc ttcacacacc agcgccccca aaatgaagag agccccatcg
     3181 ttacaatccc tgcatccggt gtcaccctct cgccaacgtt ggaaagctgc ctcttttcag
     3241 aacctccatt ctctgctgag tggcaaggtg gaccggtcca acctctacct ggtaggggag
     3301 ccagggcatc acaatgcagc tgacaggcca gccaaggcgc cgccccggcc ctccctcagc
     3361 gtggaggacg tgagtgcccc gggcctggct cgcgccgtgg gccgcatggt ggaggtgttc
     3421 ccggacggca cgagccagct gcagctacag cgctccccgg agggcacttt cggcttctgt
     3481 gtggcctctg ggaatggacg ccgggactca gggctctatg tgcaggagat ggctgatgag
     3541 agcacggcca agctgtactc ggggctgctg ggagtggggg atgagatcct cgaggtgaac
     3601 ggggccaagg ttgcaggact gggcttggct cacattaggg agctcctggc ccacgcggag
     3661 agcttgtcga tccgtgtgct gaggcagagg cctgtcccac ggtgacccag aggtgccttt
     3721 gccctcaccg tcaccccctt ggaaactctg aaccacccca gggggtggct gggaatgcac
     3781 tacataaagc tgctttgtct actgaaaatg aacatggtgg cacgtaaccc cttgggcctt
     3841 ggcagggctt ctgtgactgg ccactttagc agagggaagg agcctgtttg tgtattttgt
     3901 ttgaggatgt taatttatgc agaaccgggg aaaagatatg ggtcttccgc cctgaccagg
     3961 cctgaggtgt tgtcaacatc ttcctgcacc tttgttggca gggggagggg agagattcag
     4021 tgggtccttc ggttggtccc tgagcatcgc cttaccccca ggtcccctcc cacactgtca
     4081 agggctcccc cagcccctcc cactcaagag ccaaagaaag tactcagcca tattggcctt
     4141 gagcccgcct ttttgagtct catttctccc agctcccatt cgacaccttt gctttttttc
     4201 cagaaatgga caaagtgtcc tggagtaaca gccttacagc cattgaccat atattccaaa
     4261 cccaaaatta gcacatgtgg tctggtggta gaacatctgg gagatgttat ctggtagtca
     4321 gaatattagg acattctggg aaatctttgt gatataaggt tgaagaaaca aaatgaaacc
     4381 gagaccaatt tcagggaagt gcagctgtgg ccagtgggac cggccagacc agccctgccc
     4441 cccaccacag cctggccatg aggacctctg tcttccttct cctgtgacct tggacacggg
     4501 ctgcagctgg tgccaagctg tccccagcca caagctctct gcccagactc cctgagggca
     4561 gctgtaggtg ggccgctggc agggagatgg cagggcacga gcagcaggat gggctgtcct
     4621 gcctgggcac atccactgcc caaagggttg ggactctctg ggagtaggtg gctgtgtgtc
     4681 agtcttaaat tattaaagaa caacgctgaa actta
//
LOCUS       XR_004352756             461 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764211
            (LOC116764211), ncRNA.
ACCESSION   XR_004352756
VERSION     XR_004352756.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..461
                     /gene="LOC116764211"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764211"
     ncRNA           1..461
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764211"
                     /product="uncharacterized LOC116764211"
                     /db_xref="GeneID:116764211"
ORIGIN      
        1 gctgtggccc caaccaatgg ggcttgcttt ctctttccgc ccagagggag gggacaggtc
       61 cccaactata tccaaagctt tttttccaca acaaacggga aacagtaaga gaattaggac
      121 ccaggaggtt ccggaaatct ctacaaagga aaagtgctga tcgtttcctt ctgccaacaa
      181 gcttcactct caagcgcggt tgctatttgc actgaggcac tacagtcacc atctagatga
      241 cagacctagc aacagtaagg accacgcagt gcgctaactg ctgcgcagag ccaggaaggg
      301 tggcagggaa ggatgagaag ggaccatgtg aggacagcga gaaggcagct agctgtctgc
      361 aagccaagca gttacgcttc tagagaaacc aaatctgcta acatcttgat ctctacctac
      421 cagccttcag gacgagaaat aaatttctgt tatttaagct a
//
LOCUS       XM_032652606            1362 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 6 (SLAMF6), transcript
            variant X1, mRNA.
ACCESSION   XM_032652606
VERSION     XM_032652606.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1362
                     /gene="SLAMF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764214"
     CDS             19..1074
                     /gene="SLAMF6"
                     /codon_start=1
                     /product="SLAM family member 6 isoform X1"
                     /protein_id="XP_032508497.1"
                     /db_xref="GeneID:116764214"
                     /translation="MPRTLTALRSPAPFSTAKSMIWLLQSLTLVSCLGPGNTVSQTSS
                     TPLIVNGVLGESVTLILKFPVEEKITSITWLHDGKSAVFIEPNEALNRVTDPKRKNRL
                     NVTESYSLHLSNLTMADSGHYRAQITTLTSLLFTSYDLRIFRRLRNLQVVPHTKWSNN
                     RTCEILLTCSVENPNDNILFRWQVSGNTLQSEANLTISWDPKSFNEETYTCIAENPVS
                     NSSFSVSVQSLCKSVTNEKNEHLDTTWIVVAVSSICIVVIIVSLFVWRKKIGFFQFST
                     QQTQCPAETVRNLEYASFSPGSTVYAQVTHSKREIEIPKPVKNNDSTTIYSEVQQSQA
                     KAHLFQDNCPSQCHVIR"
     misc_feature    163..447
                     /gene="SLAMF6"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    187..201
                     /gene="SLAMF6"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    229..243
                     /gene="SLAMF6"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    340..354
                     /gene="SLAMF6"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    382..399
                     /gene="SLAMF6"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ctttcagtct atgagagaat gccaagaaca ttgactgcct tgaggtctcc agcaccattc
       61 tccactgcta agagcatgat ctggctgctc cagtctctca cacttgtctc ctgccttggc
      121 ccagggaaca cagtttcaca aaccagctca acaccattga ttgtgaacgg ggtcctgggg
      181 gagtctgtaa cacttatcct gaagtttcct gtggaagaga agatcacgtc catcacctgg
      241 ctacatgatg gaaaatctgc cgtcttcata gagccaaatg aagcactaaa cagggtgact
      301 gacccaaagc ggaaaaatcg attgaatgtc accgagtcct attccttgca tctcagcaac
      361 ctgacgatgg cagactcagg acattacaga gcccagataa ccacactgac ctctttactg
      421 tttaccagtt atgatctgag aatcttcaga cgactgagga acttacaagt tgtccctcac
      481 accaaatggt ctaataatag gacctgtgag atcctcctga cctgctctgt ggagaatcca
      541 aatgataaca tcttattcag gtggcaggtc tcaggaaaca cacttcaaag tgaagcaaac
      601 cttactatct cctgggaccc caagagtttc aatgaagaga cctacacctg catagctgag
      661 aatcctgtca gcaattcatc cttctctgtc tctgtccaga gtctctgcaa aagtgttact
      721 aatgaaaaaa atgaacacct ggataccacg tggattgtag tggcagtttc ttcaatatgt
      781 atagttgtca tcatcgtgtc attatttgtt tggaggaaaa aaataggttt ctttcaattc
      841 tctactcagc aaacccagtg tcctgcagag actgtgagga acttagagta tgcttccttc
      901 tctccaggga gcactgtgta tgctcaggtc acccattcaa agagggaaat agaaatccca
      961 aaacctgtga aaaacaatga ctccaccaca atttactctg aagttcaaca gtcccaagcg
     1021 aaagcccatc tattccagga caactgccct tcacaatgtc atgtaattcg ctgaaagtct
     1081 tcaaaggaat tcaggaacga cacatcttct aatcctgtgg gagagaacag agcttggttt
     1141 ctgtctgaca acagaatttg aatatctagg attatcagac ttgaatctgc ttacctaggt
     1201 caaacattta aggaataaca tcatctccag catatgaccc aaataacaat ttctaatcag
     1261 ctccaagtga aaacatacat cagataccat gcttgaaaaa gtcctcaaca aaatactagc
     1321 aatccgaatc caacaataca ttaaaaggat catacaccat ga
//
LOCUS       XM_032652614            1314 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 6 (SLAMF6), transcript
            variant X2, mRNA.
ACCESSION   XM_032652614
VERSION     XM_032652614.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1314
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1314
                     /gene="SLAMF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764214"
     CDS             19..1026
                     /gene="SLAMF6"
                     /codon_start=1
                     /product="SLAM family member 6 isoform X2"
                     /protein_id="XP_032508505.1"
                     /db_xref="GeneID:116764214"
                     /translation="MPRTLTALRSPAPFSTAKSMIWLLQSLTLVSCLGPGNTVSQTSS
                     TPLIVNGVLGESVTLILKFPVEEKITSITWLHDGKSAVFIEPNEALNRVTDPKRKNRL
                     NVTESYSLHLSNLTMADSGHYRAQITTLTSLLFTSYDLRIFRRLRNLQVVPHTKWSNN
                     RTCEILLTCSVENPNDNILFRWQVSGNTLQSEANLTISWDPKSFNEETYTCIAENPVS
                     NSSFSVSVQSLCKSVTNEKNEHLDTTWIVVAVSSICFFQFSTQQTQCPAETVRNLEYA
                     SFSPGSTVYAQVTHSKREIEIPKPVKNNDSTTIYSEVQQSQAKAHLFQDNCPSQCHVI
                     R"
     misc_feature    163..447
                     /gene="SLAMF6"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    187..201
                     /gene="SLAMF6"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    229..243
                     /gene="SLAMF6"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    340..354
                     /gene="SLAMF6"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    382..399
                     /gene="SLAMF6"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ctttcagtct atgagagaat gccaagaaca ttgactgcct tgaggtctcc agcaccattc
       61 tccactgcta agagcatgat ctggctgctc cagtctctca cacttgtctc ctgccttggc
      121 ccagggaaca cagtttcaca aaccagctca acaccattga ttgtgaacgg ggtcctgggg
      181 gagtctgtaa cacttatcct gaagtttcct gtggaagaga agatcacgtc catcacctgg
      241 ctacatgatg gaaaatctgc cgtcttcata gagccaaatg aagcactaaa cagggtgact
      301 gacccaaagc ggaaaaatcg attgaatgtc accgagtcct attccttgca tctcagcaac
      361 ctgacgatgg cagactcagg acattacaga gcccagataa ccacactgac ctctttactg
      421 tttaccagtt atgatctgag aatcttcaga cgactgagga acttacaagt tgtccctcac
      481 accaaatggt ctaataatag gacctgtgag atcctcctga cctgctctgt ggagaatcca
      541 aatgataaca tcttattcag gtggcaggtc tcaggaaaca cacttcaaag tgaagcaaac
      601 cttactatct cctgggaccc caagagtttc aatgaagaga cctacacctg catagctgag
      661 aatcctgtca gcaattcatc cttctctgtc tctgtccaga gtctctgcaa aagtgttact
      721 aatgaaaaaa atgaacacct ggataccacg tggattgtag tggcagtttc ttcaatatgt
      781 ttctttcaat tctctactca gcaaacccag tgtcctgcag agactgtgag gaacttagag
      841 tatgcttcct tctctccagg gagcactgtg tatgctcagg tcacccattc aaagagggaa
      901 atagaaatcc caaaacctgt gaaaaacaat gactccacca caatttactc tgaagttcaa
      961 cagtcccaag cgaaagccca tctattccag gacaactgcc cttcacaatg tcatgtaatt
     1021 cgctgaaagt cttcaaagga attcaggaac gacacatctt ctaatcctgt gggagagaac
     1081 agagcttggt ttctgtctga caacagaatt tgaatatcta ggattatcag acttgaatct
     1141 gcttacctag gtcaaacatt taaggaataa catcatctcc agcatatgac ccaaataaca
     1201 atttctaatc agctccaagt gaaaacatac atcagatacc atgcttgaaa aagtcctcaa
     1261 caaaatacta gcaatccgaa tccaacaata cattaaaagg atcatacacc atga
//
LOCUS       XM_032652615            1248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 6 (SLAMF6), transcript
            variant X3, mRNA.
ACCESSION   XM_032652615
VERSION     XM_032652615.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1248
                     /gene="SLAMF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764214"
     CDS             19..960
                     /gene="SLAMF6"
                     /codon_start=1
                     /product="SLAM family member 6 isoform X3"
                     /protein_id="XP_032508506.1"
                     /db_xref="GeneID:116764214"
                     /translation="MPRTLTALRSPAPFSTAKSMIWLLQSLTLVSCLGPGNTVSQTSS
                     TPLIVNGVLGESVTLILKFPVEEKITSITWLHDGKSAVFIEPNEALNRVTDPKRKNRL
                     NVTESYSLHLSNLTMADSGHYRAQITTLTSLLFTSYDLRIFRRLRNLQVVPHTKWSNN
                     RTCEILLTCSVENPNDNILFRWQVSGNTLQSEANLTISWDPKSFNEETYTCIAENPVS
                     NSSFSVSVQSLCKSFFQFSTQQTQCPAETVRNLEYASFSPGSTVYAQVTHSKREIEIP
                     KPVKNNDSTTIYSEVQQSQAKAHLFQDNCPSQCHVIR"
     misc_feature    163..447
                     /gene="SLAMF6"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    187..201
                     /gene="SLAMF6"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    229..243
                     /gene="SLAMF6"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    340..354
                     /gene="SLAMF6"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    382..399
                     /gene="SLAMF6"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ctttcagtct atgagagaat gccaagaaca ttgactgcct tgaggtctcc agcaccattc
       61 tccactgcta agagcatgat ctggctgctc cagtctctca cacttgtctc ctgccttggc
      121 ccagggaaca cagtttcaca aaccagctca acaccattga ttgtgaacgg ggtcctgggg
      181 gagtctgtaa cacttatcct gaagtttcct gtggaagaga agatcacgtc catcacctgg
      241 ctacatgatg gaaaatctgc cgtcttcata gagccaaatg aagcactaaa cagggtgact
      301 gacccaaagc ggaaaaatcg attgaatgtc accgagtcct attccttgca tctcagcaac
      361 ctgacgatgg cagactcagg acattacaga gcccagataa ccacactgac ctctttactg
      421 tttaccagtt atgatctgag aatcttcaga cgactgagga acttacaagt tgtccctcac
      481 accaaatggt ctaataatag gacctgtgag atcctcctga cctgctctgt ggagaatcca
      541 aatgataaca tcttattcag gtggcaggtc tcaggaaaca cacttcaaag tgaagcaaac
      601 cttactatct cctgggaccc caagagtttc aatgaagaga cctacacctg catagctgag
      661 aatcctgtca gcaattcatc cttctctgtc tctgtccaga gtctctgcaa aagtttcttt
      721 caattctcta ctcagcaaac ccagtgtcct gcagagactg tgaggaactt agagtatgct
      781 tccttctctc cagggagcac tgtgtatgct caggtcaccc attcaaagag ggaaatagaa
      841 atcccaaaac ctgtgaaaaa caatgactcc accacaattt actctgaagt tcaacagtcc
      901 caagcgaaag cccatctatt ccaggacaac tgcccttcac aatgtcatgt aattcgctga
      961 aagtcttcaa aggaattcag gaacgacaca tcttctaatc ctgtgggaga gaacagagct
     1021 tggtttctgt ctgacaacag aatttgaata tctaggatta tcagacttga atctgcttac
     1081 ctaggtcaaa catttaagga ataacatcat ctccagcata tgacccaaat aacaatttct
     1141 aatcagctcc aagtgaaaac atacatcaga taccatgctt gaaaaagtcc tcaacaaaat
     1201 actagcaatc cgaatccaac aatacattaa aaggatcata caccatga
//
LOCUS       XM_032652616            1282 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 6 (SLAMF6), transcript
            variant X4, mRNA.
ACCESSION   XM_032652616
VERSION     XM_032652616.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1282
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1282
                     /gene="SLAMF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764214"
     CDS             19..900
                     /gene="SLAMF6"
                     /codon_start=1
                     /product="SLAM family member 6 isoform X4"
                     /protein_id="XP_032508507.1"
                     /db_xref="GeneID:116764214"
                     /translation="MPRTLTALRSPAPFSTAKSMIWLLQSLTLVSCLGPGNTVSQTSS
                     TPLIVNGVLGESVTLILKFPVEEKITSITWLHDGKSAVFIEPNEALNRVTDPKRKNRL
                     NVTESYSLHLSNLTMADSGHYRAQITTLTSLLFTSYDLRIFRRLRNLQVVPHTKWSNN
                     RTCEILLTCSVENPNDNILFRWQVSGNTLQSEANLTISWDPKSFNEETYTCIAENPVS
                     NSSFSVSVQSLCKSVTNEKNEHLDTTWIVVAVSSICIVVIIVSLFVWRKKIGFFQFST
                     QQTQCPGNRNPKTCEKQ"
     misc_feature    163..447
                     /gene="SLAMF6"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    187..201
                     /gene="SLAMF6"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    229..243
                     /gene="SLAMF6"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    340..354
                     /gene="SLAMF6"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    382..399
                     /gene="SLAMF6"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ctttcagtct atgagagaat gccaagaaca ttgactgcct tgaggtctcc agcaccattc
       61 tccactgcta agagcatgat ctggctgctc cagtctctca cacttgtctc ctgccttggc
      121 ccagggaaca cagtttcaca aaccagctca acaccattga ttgtgaacgg ggtcctgggg
      181 gagtctgtaa cacttatcct gaagtttcct gtggaagaga agatcacgtc catcacctgg
      241 ctacatgatg gaaaatctgc cgtcttcata gagccaaatg aagcactaaa cagggtgact
      301 gacccaaagc ggaaaaatcg attgaatgtc accgagtcct attccttgca tctcagcaac
      361 ctgacgatgg cagactcagg acattacaga gcccagataa ccacactgac ctctttactg
      421 tttaccagtt atgatctgag aatcttcaga cgactgagga acttacaagt tgtccctcac
      481 accaaatggt ctaataatag gacctgtgag atcctcctga cctgctctgt ggagaatcca
      541 aatgataaca tcttattcag gtggcaggtc tcaggaaaca cacttcaaag tgaagcaaac
      601 cttactatct cctgggaccc caagagtttc aatgaagaga cctacacctg catagctgag
      661 aatcctgtca gcaattcatc cttctctgtc tctgtccaga gtctctgcaa aagtgttact
      721 aatgaaaaaa atgaacacct ggataccacg tggattgtag tggcagtttc ttcaatatgt
      781 atagttgtca tcatcgtgtc attatttgtt tggaggaaaa aaataggttt ctttcaattc
      841 tctactcagc aaacccagtg tcctggaaat agaaatccca aaacctgtga aaaacaatga
      901 ctccaccaca atttactctg aagttcaaca gtcccaagcg aaagcccatc tattccagga
      961 caactgccct tcacaatgtc atgtaattcg ctgaaagtct tcaaaggaat tcaggaacga
     1021 cacatcttct aatcctgtgg gagagaacag agcttggttt ctgtctgaca acagaatttg
     1081 aatatctagg attatcagac ttgaatctgc ttacctaggt caaacattta aggaataaca
     1141 tcatctccag catatgaccc aaataacaat ttctaatcag ctccaagtga aaacatacat
     1201 cagataccat gcttgaaaaa gtcctcaaca aaatactagc aatccgaatc caacaataca
     1261 ttaaaaggat catacaccat ga
//
LOCUS       XM_032652623            3107 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA2013 ortholog (KIAA2013), mRNA.
ACCESSION   XM_032652623
VERSION     XM_032652623.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3107
                     /gene="KIAA2013"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764223"
     CDS             515..2419
                     /gene="KIAA2013"
                     /codon_start=1
                     /product="uncharacterized protein KIAA2013 homolog"
                     /protein_id="XP_032508514.1"
                     /db_xref="GeneID:116764223"
                     /translation="MWLQQRLKGLPGLLSSSWARRLLCLLGLLVLLLWFAGSGARRAA
                     GGLQLLPWPRGEPGAAEPSACLEAATRAWRGLRERGEAVPLGPGVPALVANGFLALDV
                     VANRLWVTPGEREPAVAPDFVPFVQLRPLSALSEAGESVLLLREGLLRRVRCLQLGTP
                     GPGPAAAGPGPASASDLVTGSGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAAL
                     QTVGPTAGPVPKAFTSTLEKVGDHQFLLYSGRSPPFPTGLVHLLVVAAKKLVNRLQVA
                     PKTQLDETVLWVVHVSGPLNPQVLKSKAGKELKVLQDLARKEMLELLEMPAAELLQDH
                     QRLWAQLFSPGVEMKKITDAHTPSGLTVNLTLYYMLSCSPAPLLSPDLSHRERDQMES
                     TLNYEDHCFSGHATMHAGNLWPGRLSSIQQILQLWDLWRLTLQKRGCKGLVRAGAPGI
                     LQGMVLSFGGLQFTENHLQFQADPDVLHNSYALHGIRYKNDHINLAVLADPEGKPYLH
                     VSVESRGQLVKIYACEAGCLDEPVELTSAPQGHTFSVMVTQPITPLLYISTDLTHLQD
                     LRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKP
                     LFRSKEDPSV"
     misc_feature    530..2401
                     /gene="KIAA2013"
                     /note="Uncharacterized conserved protein (DUF2152);
                     Region: DUF2152; pfam10222"
                     /db_xref="CDD:431148"
ORIGIN      
        1 ttaaaattag tttttaaaaa tcttggggct gttgaatcca ttagtagcga atggggcaca
       61 acacgtgttc ggtttggcta gcgcggttgg ttttttcgtt tctgttttaa gttcccatga
      121 attggccgct tccagtcctc cgcagacccc tctcctcttc tggacttgac ttttcaggcc
      181 cgagaactgg tggtcaaacc ccggcggtgc ccgccccctc ctcgctgtgg ccacgcctcc
      241 ttctcccggg cccgcccctc tcccctccct ccgccctctc cttttccatc tgtcgcaaaa
      301 gagtaggtgg cgcttgacgg cccgcgtcgt ttgacggccg gaggcaaccg agaaggagga
      361 gggagcagtt gtggcggctg ccgcggcgcc tgtgacgggg gctggggtgg gcgccgcggt
      421 ccgggcccgg gagtgaggcg cgggcggccg ggccggtggg ctgggcggcg ggcccggcgg
      481 ccgcccccgc gccgcgcccg cgcctggcgg cccgatgtgg ctgcagcagc ggcttaaggg
      541 gctgccggga ctgctgtcga gcagctgggc ccgccgccta ctctgcctgc tcggcctcct
      601 ggtgctgctt ctgtggttcg cgggctccgg ggcgcggcgg gcggcgggcg gtctgcagct
      661 gttgccctgg ccccgcggcg agccgggcgc cgccgagccc tctgcctgtc tggaggcagc
      721 cacccgcgcg tggcgcggcc tgcgggagcg gggcgaggct gtaccgctgg gccccggagt
      781 gccggccctg gtggccaacg gcttcctggc cctggacgtg gtcgccaacc ggctgtgggt
      841 gacccccggg gagcgggagc ccgccgtggc gccggacttc gtgcccttcg tgcagctgcg
      901 cccgctgagc gcgctctctg aagctggaga gtcagtgttg ctgctgcggg aagggctgct
      961 gcggcgggtg cgctgcctgc agctcgggac tccgggtccc ggccctgcgg ccgccggccc
     1021 gggccccgcc tcggcctccg acctcgtcac gggatccggc cgagactgcg tgctgctgca
     1081 agaggacttt ctggcgcacc ggggccgacc ccacgtctat ctgcagcgca tccagctcaa
     1141 caaccccacg gaacgcgtgg ccgcgctgca gactgtcggg cccactgccg gcccggtgcc
     1201 caaggccttc accagcaccc tggagaaggt cggagaccat cagttcctcc tctactcggg
     1261 ccggtccccg ccttttccca cggggctggt gcacctgctg gtggtggccg ccaagaagtt
     1321 agtgaaccgt ctccaagtgg ctcccaagac gcaactggac gagactgtgc tgtgggtggt
     1381 gcacgtctcc ggccctctta acccccaggt gctcaaaagc aaagcaggca aggagctcaa
     1441 ggtgctccag gacttggcac ggaaggaaat gctggagctc ttggagatgc cggcggcgga
     1501 gctgcttcag gaccaccagc gcctctgggc ccagctcttc agcccaggtg tggaaatgaa
     1561 gaagatcacc gatgcccaca ctccatcagg tctgaccgtg aacctgacgc tgtactacat
     1621 gctttcctgc tcccccgcgc cactgctcag ccctgacctg agccacaggg agcgagacca
     1681 gatggagtcg acactcaact atgaagatca ctgcttcagc ggccacgcca ccatgcacgc
     1741 tgggaacctc tggccgggcc gcctgtcctc catccagcag atcctgcagc tctgggacct
     1801 gtggaggctg accctgcaga agcgcggctg caaggggctg gtgcgggcgg gcgccccggg
     1861 catcctgcag ggcatggtgc tcagcttcgg cggcctgcag ttcaccgaga accacctcca
     1921 gttccaggct gaccccgacg tgttgcacaa cagctacgcc ctgcatggca tccgctacaa
     1981 gaatgaccac atcaacctgg ccgtgctcgc ggaccccgag ggcaagccgt acctgcacgt
     2041 gtctgtggag tcccgcggcc agctcgtcaa gatctacgcc tgcgaagcgg gctgcctgga
     2101 cgagcctgtg gagctgacct cggcgcccca gggccacacc ttctcggtca tggtgacgca
     2161 gcccatcacg ccgctgctct acatctccac tgacctcacg cacctgcagg acctgcggca
     2221 cacgctgcat ctcaaggcca tcctggccca cgacgagcac atggcccagc aggaccccgg
     2281 gctgcccttc ctcttctggt tcagcgtggc ctccctcatc accctcttcc acctcttcct
     2341 attcaagctc atctacaacg agtactgtgg gcctggcgcc aaacccctct tcaggagtaa
     2401 ggaagatccc agtgtctgag tggcatcagt cctgctttca gtcgccactt gcacaagaca
     2461 cccagcactg aaagtcctgc tgctgcgaac aagggatcct ttgaaagcac ccagcctttt
     2521 gtgccttgtt gggggacacc agtgactcgg aagtgcgcgt ggatgttcag gagtttgcat
     2581 cagggagcgg gaggggcggg gctggtggac cttttgtacg ctttcgactc aataaagtga
     2641 acctatatgg aaaatacttg aaattgaact cactctttcc actttccccc tttcttctgt
     2701 cccaggaaat agaccctctt ttgaaaagac tcttgtctag gaaaaaatgt gttcttttcc
     2761 taatttaatg tgttctttct tgaatgaatt tttaatttat tgttgagatt ttgctggatg
     2821 gcttttgcat ccactctcgg tagggaatct tggcagtgat ttccaatatg caccacctcg
     2881 ggaggtttgg aggcccgcac gccgcctgcg tgaaggggtg ggtctccgtc accctcgggt
     2941 ttgcacattg cgtctttctt atcatgagcc tatggagatc tgtggttttg tacctctggg
     3001 ctttagggga ggtgtttaac tttctagtga tcgatgattg ttgggttttg gaataccaaa
     3061 gctttttctt gtgctctgtt tttaaataaa tctctttcaa acctcca
//
LOCUS       XM_032652634            1148 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus C1q and TNF related 12 (C1QTNF12), mRNA.
ACCESSION   XM_032652634
VERSION     XM_032652634.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1148
                     /gene="C1QTNF12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764231"
     CDS             159..1058
                     /gene="C1QTNF12"
                     /codon_start=1
                     /product="adipolin"
                     /protein_id="XP_032508525.1"
                     /db_xref="GeneID:116764231"
                     /translation="MRWVWAAAAALLWPQLTLLGGVRARREPKRPRKPGQHPAAPNAT
                     TSSSEGLLGFPKLPEASGPEFTDAHMTWLNFVRRPDDGASKKRCRGQDKKSRGPPGPP
                     GPPGAEVTQEAVLREFQGMLKEATERRSSAPLGPPLPEGTGRWLVSEAFHCRLKGPVL
                     VDKRTLVELQGFQAPAAQGAFLRGSGLSLASGRFTAPVTAIFQFFASLHVDPRELQGR
                     ARLRARDTVRVLVCIESLCHRHTSLEAISGLESGGRVFTVHVQGLLQLQAGQYTSVFV
                     DNGSGAALTVQSSSSFSGLLLGT"
ORIGIN      
        1 tcctcccgct tcccttgcta gcccggctca tcccgcgcag acatgcacca gtggtggccg
       61 ggcagccctc cgggctgtgc tcccgcgccg gggctctgag tgccttcagg cacctgggct
      121 cacatcactg agccgccgca gccgacccgg cagccaacat gcgctgggtc tgggcggccg
      181 ccgcggccct cctctggcca cagctcacgc tccttggggg cgtgagggcc cggcgggagc
      241 ccaagaggcc acggaagccc ggccagcacc ccgcagcccc caacgccacc acgtccagca
      301 gcgaggggct actgggcttc cccaagctgc ctgaggcctc agggcctgag ttcacagatg
      361 cccacatgac atggctgaac ttcgtccggc gccccgatga cggggcctca aagaaacggt
      421 gccgaggcca ggacaagaag tcgcgaggcc cccctggccc cccaggaccg cccggtgcgg
      481 aagtgaccca ggaggctgtg ctccgggagt ttcaggggat gctgaaggag gctaccgagc
      541 gtcggtcctc agcgccgctg ggccccccgc tgcccgaggg gacggggagg tggctggtgt
      601 ccgaggcctt ccactgtcgg ctgaagggcc cggtgctggt ggacaagagg acgctggtgg
      661 agctgcaggg cttccaggcc cccgctgccc agggcgcctt cctgcggggg tctggcctga
      721 gcctggcctc cggtcggttc acggccccgg tcactgccat cttccaattc tttgctagcc
      781 tgcacgtgga ccccagggag ctgcagggca gggcccggct gcgggcccgg gacacagtgc
      841 gtgtgctggt ctgcatcgag tccctgtgcc atcgccacac gtccctggag gccatctccg
      901 gcctggagag cggcggcagg gtcttcacgg tgcacgtgca ggggctgctg cagctgcagg
      961 cgggacagta cacctccgtc tttgtggaca atggctccgg cgcagccctc accgtccaga
     1021 gcagctccag cttctccggc ctgctcctgg gcacgtgagg ggccgacggg ccgcggggga
     1081 gctgccgcaa ccctcacccc gctgccctcc ggtaaacctg gggtcacagc aataaagagc
     1141 ccccagcc
//
LOCUS       XM_032652646            3184 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 12 receptor subunit beta 2
            (IL12RB2), transcript variant X1, mRNA.
ACCESSION   XM_032652646
VERSION     XM_032652646.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3184
                     /gene="IL12RB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764238"
     CDS             171..2750
                     /gene="IL12RB2"
                     /codon_start=1
                     /product="interleukin-12 receptor subunit beta-2 isoform
                     X1"
                     /protein_id="XP_032508537.1"
                     /db_xref="GeneID:116764238"
                     /translation="MAHTVNGCPLALIFIVVWLLVKAKIDVCKRGDVTVQPSHVISLG
                     SAVNISCSLKTKQGCLQFSSFNKLILYKFDRRIYFQHGHSLSSQVTGLPLGTTLFVCK
                     LACSSNDEIRICGAEISVGVIPEQPQNLSCIQKGERGTVRCTWDRGQDTHLYTAYTLQ
                     LKGPKNLTWQKQCNDHYCDHLDLGINLTPESPESSYTAKVTAINSLGSASSFPSSFTL
                     LDIVRPLPPWDIRIKFVNASVSRCTLQWRDEGLVLLNRLRYRPINSRSWNMVNATNAK
                     GRHDLLDLKPFTEYEFQISSKLHLYKGSWSDWSESLRTQTPEEEPTGTLDVWYMRQHI
                     DYNRQQISLFWKNLSLSEAKGKILHYQVTLQEVAGGKATLQNITERTSWTWVIPRTGN
                     WAVSVSAANSKGSSLPTHINITDLCGAGLLAPQQVSANSEGVDNLMVTWTPPGKAATA
                     VQEYVVEWRELHPGASTQPPLGWLWSPPYNLSALISENIKPYICYEIRVHALSGDQGG
                     CNSIRGNSKHKAPLSGPHINAISEEKGSILISWNEIPAREQMGCILHYRIYWKEQDSN
                     SQPQLCEIPYRVSPNSHPIDSLRSRVTYILWMTALTAAGESPQGNEREFCLQGKANWS
                     TFVAPSICLGVIMVGVLSVRCFRQKVFVLLLALRPQWCSKEIPDPANSTWAKNFVEEK
                     TQLALDRLLTDCPTPEEPETLVINKVLHQVTPAFRRSHHPNWPEKGQGVQGHYTSEED
                     TGYSASSPPPPRALTAETGQGVDLYKVLGSKGPDSTPGNPASPSTVLPVDYLPAHEGY
                     LPSNIDYLPSHEPPITDPQEELPRHISLSIFPSSSLHPLTFSCGEKLTLDQLKMRCGS
                     LML"
     misc_feature    252..500
                     /gene="IL12RB2"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    <570..1388
                     /gene="IL12RB2"
                     /note="Phage-related protein, tail protein J [Mobilome:
                     prophages, transposons]; Region: COG4733"
                     /db_xref="CDD:443767"
     misc_feature    840..1118
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(840..842,1026..1028,1080..1082)
                     /gene="IL12RB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1083..1088,1092..1097)
                     /gene="IL12RB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1437..1694
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    1731..2015
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1731..1733,1938..1940,1983..1985)
                     /gene="IL12RB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1986..1991,1995..2000)
                     /gene="IL12RB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
ORIGIN      
        1 gggtcacagg cggggcgcgc atgggcaccg gaacgcccgg agcgcacact gcctgcgccg
       61 cacgtgcgtc ccgcagcacc cgggccatcg gctccgcgcc gccccgcagc gggcccgcgg
      121 gctggagacg cgcggaaaaa tacagaggtg tatcccagag ttgactgttc atggcacata
      181 cagttaacgg gtgcccattg gcacttattt ttattgtcgt gtggctgtta gttaaagcaa
      241 aaatagatgt gtgcaagaga ggggatgtga ctgtgcagcc ttcccatgta atttcacttg
      301 ggtcagctgt caacatttcg tgctctttga agaccaaaca aggctgcttg caattctcca
      361 gttttaacaa gttaatcctc tacaagtttg acagaagaat ctattttcag catggtcact
      421 cactcagctc acaagtcaca ggtcttcccc tgggtacaac cctgtttgtc tgcaaactgg
      481 cctgtagcag taatgacgag attcgaatat gtggggcaga gatctccgtt ggtgttattc
      541 cagaacagcc tcaaaactta tcttgtatac agaagggaga acgtgggacc gtgagatgca
      601 cctgggatag aggacaagac acccacctct atactgctta tactttacag ttaaagggac
      661 ccaaaaattt aacttggcag aagcaatgta atgatcacta ttgtgatcat ttggaccttg
      721 gaattaacct aacccctgaa tcacctgaat ctagttacac agccaaggtt actgctatca
      781 atagtcttgg gagtgcttct tcattcccat cctcattcac attgttggac atagtgaggc
      841 ctcttcctcc gtgggacatc agaatcaaat ttgtaaacgc ttccgtgagc aggtgtaccc
      901 ttcagtggag agatgagggg ctggtgctgc ttaatcgact cagataccgg cccattaaca
      961 gcaggtcctg gaatatggtt aatgccacaa atgccaaagg aagacatgat ttgctggatc
     1021 tgaaaccctt tacagaatat gaatttcaga tttcctctaa gttacatctt tataaaggta
     1081 gttggagtga ttggagtgaa tcattgagaa cacaaacacc agaagaagag cctactggaa
     1141 cattagatgt ctggtacatg agacagcaca ttgactacaa tagacaacag atttctcttt
     1201 tctggaagaa tctgagccta tcagaggcaa aaggaaaaat cctccactat caagtgacct
     1261 tgcaggaggt agcaggggga aaagccacac tacagaacat cacagaacgc acctcctgga
     1321 cctgggtcat tcccagaact gggaactggg ctgtgtccgt gtctgcagct aactcgaaag
     1381 gcagttcctt gcccactcat attaacataa cagacctgtg tggggcaggg ttgctggctc
     1441 ctcaacaggt ctcagcaaac tcagagggcg tggacaacct catggtgaca tggacacctc
     1501 cagggaaagc tgccactgct gtgcaggagt atgtggtgga atggagggaa ctccatccgg
     1561 gggccagcac gcagccccct ctaggctggt tgtggagtcc cccctacaac ctgtctgctc
     1621 tgatttcaga aaacataaaa ccctacatct gttatgaaat ccgcgtgcat gcactttcag
     1681 gggaccaggg aggatgcaac tccatccggg gtaactctaa acacaaagca ccactgagtg
     1741 gcccccacat taatgccatc tcagaggaaa aagggagcat tttaatttca tggaatgaaa
     1801 ttccagcccg ggagcaaatg ggctgcatcc tccattacag gatatattgg aaggaacagg
     1861 actccaattc ccagcctcag ctttgtgaaa ttccctatag agtctcccca aattctcatc
     1921 ccatagacag cctgcggtcc agagtgacat acattctatg gatgacagct ctgacagctg
     1981 ctggtgaaag cccccaagga aatgaaagag aattttgtct gcaaggtaaa gccaattgga
     2041 gcacatttgt ggcaccaagc atttgcctgg gtgtcatcat ggtgggcgtt ctctcagtgc
     2101 gttgcttccg gcaaaaggta tttgttctcc ttttggccct cagacctcag tggtgtagca
     2161 aagaaattcc agacccagcg aatagcactt gggccaagaa ctttgtggag gagaagacgc
     2221 agctggcctt ggataggctc ctgacagact gtcccactcc cgaggaacct gagaccctgg
     2281 tcatcaacaa agtccttcac caagtgaccc cagccttcag acgttcccat caccccaact
     2341 ggccagaaaa gggacaagga gtccaaggtc actatacctc tgaggaagac acaggataca
     2401 gtgcctcgag ccccccacct ccgagagctc tcacagcaga gacaggacaa ggggtggatc
     2461 tgtacaaggt gctggggagc aagggccccg actcaacacc gggaaaccca gccagcccct
     2521 cgacagtcct cccagtggac taccttcctg cccatgaagg ctacttaccc tccaacatag
     2581 attatctccc ttcacatgag cctcccataa ctgaccctca ggaagaactg cctcggcaca
     2641 tctctctttc cattttcccc tcgagttccc ttcacccact caccttctcc tgtggtgaga
     2701 agctgactct ggatcagtta aagatgaggt gtggctccct catgctctga gtggcaaagc
     2761 ttgaagtttg gaaagtcgat gtgcctccac gtggcacagt gtgccccatc tccccagcca
     2821 cctgctccag tggttgttac gtctgggtgc taccatcagg tctggttgca gctagagggc
     2881 aggcaagcca actcagggtg aatctcatct caagatacct catcttgcct tctccagagc
     2941 cttaagatca catcctctgc tgtgtggacc tagagactcc aatctgggtt cctgcaactt
     3001 tcttggctat gttggccaga aaggagaaag gcaagagtgg aaaccaaaac tcttactagc
     3061 aatggcagac agtccagagg accattcatc caacagctat ttactgttga ccctgaataa
     3121 tgtttgagct gcatgggtcc acctatatac agattttttt taataataaa ttctacagta
     3181 ctac
//
LOCUS       XM_032652655            3195 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 12 receptor subunit beta 2
            (IL12RB2), transcript variant X2, mRNA.
ACCESSION   XM_032652655
VERSION     XM_032652655.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3195
                     /gene="IL12RB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764238"
     CDS             182..2761
                     /gene="IL12RB2"
                     /codon_start=1
                     /product="interleukin-12 receptor subunit beta-2 isoform
                     X1"
                     /protein_id="XP_032508546.1"
                     /db_xref="GeneID:116764238"
                     /translation="MAHTVNGCPLALIFIVVWLLVKAKIDVCKRGDVTVQPSHVISLG
                     SAVNISCSLKTKQGCLQFSSFNKLILYKFDRRIYFQHGHSLSSQVTGLPLGTTLFVCK
                     LACSSNDEIRICGAEISVGVIPEQPQNLSCIQKGERGTVRCTWDRGQDTHLYTAYTLQ
                     LKGPKNLTWQKQCNDHYCDHLDLGINLTPESPESSYTAKVTAINSLGSASSFPSSFTL
                     LDIVRPLPPWDIRIKFVNASVSRCTLQWRDEGLVLLNRLRYRPINSRSWNMVNATNAK
                     GRHDLLDLKPFTEYEFQISSKLHLYKGSWSDWSESLRTQTPEEEPTGTLDVWYMRQHI
                     DYNRQQISLFWKNLSLSEAKGKILHYQVTLQEVAGGKATLQNITERTSWTWVIPRTGN
                     WAVSVSAANSKGSSLPTHINITDLCGAGLLAPQQVSANSEGVDNLMVTWTPPGKAATA
                     VQEYVVEWRELHPGASTQPPLGWLWSPPYNLSALISENIKPYICYEIRVHALSGDQGG
                     CNSIRGNSKHKAPLSGPHINAISEEKGSILISWNEIPAREQMGCILHYRIYWKEQDSN
                     SQPQLCEIPYRVSPNSHPIDSLRSRVTYILWMTALTAAGESPQGNEREFCLQGKANWS
                     TFVAPSICLGVIMVGVLSVRCFRQKVFVLLLALRPQWCSKEIPDPANSTWAKNFVEEK
                     TQLALDRLLTDCPTPEEPETLVINKVLHQVTPAFRRSHHPNWPEKGQGVQGHYTSEED
                     TGYSASSPPPPRALTAETGQGVDLYKVLGSKGPDSTPGNPASPSTVLPVDYLPAHEGY
                     LPSNIDYLPSHEPPITDPQEELPRHISLSIFPSSSLHPLTFSCGEKLTLDQLKMRCGS
                     LML"
     misc_feature    263..511
                     /gene="IL12RB2"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    <581..1399
                     /gene="IL12RB2"
                     /note="Phage-related protein, tail protein J [Mobilome:
                     prophages, transposons]; Region: COG4733"
                     /db_xref="CDD:443767"
     misc_feature    851..1129
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(851..853,1037..1039,1091..1093)
                     /gene="IL12RB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1094..1099,1103..1108)
                     /gene="IL12RB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1448..1705
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    1742..2026
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1742..1744,1949..1951,1994..1996)
                     /gene="IL12RB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1997..2002,2006..2011)
                     /gene="IL12RB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
ORIGIN      
        1 gagcagcaaa gggcatgtct tgctcaagga acagtctgaa ggccagtgtg aatgaagcag
       61 agctggcaag gcaaaaacgt agagcaaatg atggtggcaa gataggagac atgaagccat
      121 gcagtggctg agagagtcat gtatggaaaa atacagaggt gtatcccaga gttgactgtt
      181 catggcacat acagttaacg ggtgcccatt ggcacttatt tttattgtcg tgtggctgtt
      241 agttaaagca aaaatagatg tgtgcaagag aggggatgtg actgtgcagc cttcccatgt
      301 aatttcactt gggtcagctg tcaacatttc gtgctctttg aagaccaaac aaggctgctt
      361 gcaattctcc agttttaaca agttaatcct ctacaagttt gacagaagaa tctattttca
      421 gcatggtcac tcactcagct cacaagtcac aggtcttccc ctgggtacaa ccctgtttgt
      481 ctgcaaactg gcctgtagca gtaatgacga gattcgaata tgtggggcag agatctccgt
      541 tggtgttatt ccagaacagc ctcaaaactt atcttgtata cagaagggag aacgtgggac
      601 cgtgagatgc acctgggata gaggacaaga cacccacctc tatactgctt atactttaca
      661 gttaaaggga cccaaaaatt taacttggca gaagcaatgt aatgatcact attgtgatca
      721 tttggacctt ggaattaacc taacccctga atcacctgaa tctagttaca cagccaaggt
      781 tactgctatc aatagtcttg ggagtgcttc ttcattccca tcctcattca cattgttgga
      841 catagtgagg cctcttcctc cgtgggacat cagaatcaaa tttgtaaacg cttccgtgag
      901 caggtgtacc cttcagtgga gagatgaggg gctggtgctg cttaatcgac tcagataccg
      961 gcccattaac agcaggtcct ggaatatggt taatgccaca aatgccaaag gaagacatga
     1021 tttgctggat ctgaaaccct ttacagaata tgaatttcag atttcctcta agttacatct
     1081 ttataaaggt agttggagtg attggagtga atcattgaga acacaaacac cagaagaaga
     1141 gcctactgga acattagatg tctggtacat gagacagcac attgactaca atagacaaca
     1201 gatttctctt ttctggaaga atctgagcct atcagaggca aaaggaaaaa tcctccacta
     1261 tcaagtgacc ttgcaggagg tagcaggggg aaaagccaca ctacagaaca tcacagaacg
     1321 cacctcctgg acctgggtca ttcccagaac tgggaactgg gctgtgtccg tgtctgcagc
     1381 taactcgaaa ggcagttcct tgcccactca tattaacata acagacctgt gtggggcagg
     1441 gttgctggct cctcaacagg tctcagcaaa ctcagagggc gtggacaacc tcatggtgac
     1501 atggacacct ccagggaaag ctgccactgc tgtgcaggag tatgtggtgg aatggaggga
     1561 actccatccg ggggccagca cgcagccccc tctaggctgg ttgtggagtc ccccctacaa
     1621 cctgtctgct ctgatttcag aaaacataaa accctacatc tgttatgaaa tccgcgtgca
     1681 tgcactttca ggggaccagg gaggatgcaa ctccatccgg ggtaactcta aacacaaagc
     1741 accactgagt ggcccccaca ttaatgccat ctcagaggaa aaagggagca ttttaatttc
     1801 atggaatgaa attccagccc gggagcaaat gggctgcatc ctccattaca ggatatattg
     1861 gaaggaacag gactccaatt cccagcctca gctttgtgaa attccctata gagtctcccc
     1921 aaattctcat cccatagaca gcctgcggtc cagagtgaca tacattctat ggatgacagc
     1981 tctgacagct gctggtgaaa gcccccaagg aaatgaaaga gaattttgtc tgcaaggtaa
     2041 agccaattgg agcacatttg tggcaccaag catttgcctg ggtgtcatca tggtgggcgt
     2101 tctctcagtg cgttgcttcc ggcaaaaggt atttgttctc cttttggccc tcagacctca
     2161 gtggtgtagc aaagaaattc cagacccagc gaatagcact tgggccaaga actttgtgga
     2221 ggagaagacg cagctggcct tggataggct cctgacagac tgtcccactc ccgaggaacc
     2281 tgagaccctg gtcatcaaca aagtccttca ccaagtgacc ccagccttca gacgttccca
     2341 tcaccccaac tggccagaaa agggacaagg agtccaaggt cactatacct ctgaggaaga
     2401 cacaggatac agtgcctcga gccccccacc tccgagagct ctcacagcag agacaggaca
     2461 aggggtggat ctgtacaagg tgctggggag caagggcccc gactcaacac cgggaaaccc
     2521 agccagcccc tcgacagtcc tcccagtgga ctaccttcct gcccatgaag gctacttacc
     2581 ctccaacata gattatctcc cttcacatga gcctcccata actgaccctc aggaagaact
     2641 gcctcggcac atctctcttt ccattttccc ctcgagttcc cttcacccac tcaccttctc
     2701 ctgtggtgag aagctgactc tggatcagtt aaagatgagg tgtggctccc tcatgctctg
     2761 agtggcaaag cttgaagttt ggaaagtcga tgtgcctcca cgtggcacag tgtgccccat
     2821 ctccccagcc acctgctcca gtggttgtta cgtctgggtg ctaccatcag gtctggttgc
     2881 agctagaggg caggcaagcc aactcagggt gaatctcatc tcaagatacc tcatcttgcc
     2941 ttctccagag ccttaagatc acatcctctg ctgtgtggac ctagagactc caatctgggt
     3001 tcctgcaact ttcttggcta tgttggccag aaaggagaaa ggcaagagtg gaaaccaaaa
     3061 ctcttactag caatggcaga cagtccagag gaccattcat ccaacagcta tttactgttg
     3121 accctgaata atgtttgagc tgcatgggtc cacctatata cagatttttt ttaataataa
     3181 attctacagt actac
//
LOCUS       XM_032652663            2287 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 12 receptor subunit beta 2
            (IL12RB2), transcript variant X3, mRNA.
ACCESSION   XM_032652663
VERSION     XM_032652663.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2287
                     /gene="IL12RB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764238"
     CDS             54..2273
                     /gene="IL12RB2"
                     /codon_start=1
                     /product="interleukin-12 receptor subunit beta-2 isoform
                     X2"
                     /protein_id="XP_032508554.1"
                     /db_xref="GeneID:116764238"
                     /translation="MTRFEYVGQRSPLVKGERGTVRCTWDRGQDTHLYTAYTLQLKGP
                     KNLTWQKQCNDHYCDHLDLGINLTPESPESSYTAKVTAINSLGSASSFPSSFTLLDIV
                     RPLPPWDIRIKFVNASVSRCTLQWRDEGLVLLNRLRYRPINSRSWNMVNATNAKGRHD
                     LLDLKPFTEYEFQISSKLHLYKGSWSDWSESLRTQTPEEEPTGTLDVWYMRQHIDYNR
                     QQISLFWKNLSLSEAKGKILHYQVTLQEVAGGKATLQNITERTSWTWVIPRTGNWAVS
                     VSAANSKGSSLPTHINITDLCGAGLLAPQQVSANSEGVDNLMVTWTPPGKAATAVQEY
                     VVEWRELHPGASTQPPLGWLWSPPYNLSALISENIKPYICYEIRVHALSGDQGGCNSI
                     RGNSKHKAPLSGPHINAISEEKGSILISWNEIPAREQMGCILHYRIYWKEQDSNSQPQ
                     LCEIPYRVSPNSHPIDSLRSRVTYILWMTALTAAGESPQGNEREFCLQGKANWSTFVA
                     PSICLGVIMVGVLSVRCFRQKVFVLLLALRPQWCSKEIPDPANSTWAKNFVEEKTQLA
                     LDRLLTDCPTPEEPETLVINKVLHQVTPAFRRSHHPNWPEKGQGVQGHYTSEEDTGYS
                     ASSPPPPRALTAETGQGVDLYKVLGSKGPDSTPGNPASPSTVLPVDYLPAHEGYLPSN
                     IDYLPSHEPPITDPQEELPRHISLSIFPSSSLHPLTFSCGEKLTLDQLKMRCGSLML"
     misc_feature    <102..911
                     /gene="IL12RB2"
                     /note="Phage-related protein, tail protein J [Mobilome:
                     prophages, transposons]; Region: COG4733"
                     /db_xref="CDD:443767"
     misc_feature    363..641
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(363..365,549..551,603..605)
                     /gene="IL12RB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(606..611,615..620)
                     /gene="IL12RB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    960..1217
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    1254..1538
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1254..1256,1461..1463,1506..1508)
                     /gene="IL12RB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1509..1514,1518..1523)
                     /gene="IL12RB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
ORIGIN      
        1 aggtcttccc ctgggtacaa ccctgtttgt ctgcaaactg gcctgtagca gtaatgacga
       61 gattcgaata tgtggggcag agatctccgt tggtgaaggg agaacgtggg accgtgagat
      121 gcacctggga tagaggacaa gacacccacc tctatactgc ttatacttta cagttaaagg
      181 gacccaaaaa tttaacttgg cagaagcaat gtaatgatca ctattgtgat catttggacc
      241 ttggaattaa cctaacccct gaatcacctg aatctagtta cacagccaag gttactgcta
      301 tcaatagtct tgggagtgct tcttcattcc catcctcatt cacattgttg gacatagtga
      361 ggcctcttcc tccgtgggac atcagaatca aatttgtaaa cgcttccgtg agcaggtgta
      421 cccttcagtg gagagatgag gggctggtgc tgcttaatcg actcagatac cggcccatta
      481 acagcaggtc ctggaatatg gttaatgcca caaatgccaa aggaagacat gatttgctgg
      541 atctgaaacc ctttacagaa tatgaatttc agatttcctc taagttacat ctttataaag
      601 gtagttggag tgattggagt gaatcattga gaacacaaac accagaagaa gagcctactg
      661 gaacattaga tgtctggtac atgagacagc acattgacta caatagacaa cagatttctc
      721 ttttctggaa gaatctgagc ctatcagagg caaaaggaaa aatcctccac tatcaagtga
      781 ccttgcagga ggtagcaggg ggaaaagcca cactacagaa catcacagaa cgcacctcct
      841 ggacctgggt cattcccaga actgggaact gggctgtgtc cgtgtctgca gctaactcga
      901 aaggcagttc cttgcccact catattaaca taacagacct gtgtggggca gggttgctgg
      961 ctcctcaaca ggtctcagca aactcagagg gcgtggacaa cctcatggtg acatggacac
     1021 ctccagggaa agctgccact gctgtgcagg agtatgtggt ggaatggagg gaactccatc
     1081 cgggggccag cacgcagccc cctctaggct ggttgtggag tcccccctac aacctgtctg
     1141 ctctgatttc agaaaacata aaaccctaca tctgttatga aatccgcgtg catgcacttt
     1201 caggggacca gggaggatgc aactccatcc ggggtaactc taaacacaaa gcaccactga
     1261 gtggccccca cattaatgcc atctcagagg aaaaagggag cattttaatt tcatggaatg
     1321 aaattccagc ccgggagcaa atgggctgca tcctccatta caggatatat tggaaggaac
     1381 aggactccaa ttcccagcct cagctttgtg aaattcccta tagagtctcc ccaaattctc
     1441 atcccataga cagcctgcgg tccagagtga catacattct atggatgaca gctctgacag
     1501 ctgctggtga aagcccccaa ggaaatgaaa gagaattttg tctgcaaggt aaagccaatt
     1561 ggagcacatt tgtggcacca agcatttgcc tgggtgtcat catggtgggc gttctctcag
     1621 tgcgttgctt ccggcaaaag gtatttgttc tccttttggc cctcagacct cagtggtgta
     1681 gcaaagaaat tccagaccca gcgaatagca cttgggccaa gaactttgtg gaggagaaga
     1741 cgcagctggc cttggatagg ctcctgacag actgtcccac tcccgaggaa cctgagaccc
     1801 tggtcatcaa caaagtcctt caccaagtga ccccagcctt cagacgttcc catcacccca
     1861 actggccaga aaagggacaa ggagtccaag gtcactatac ctctgaggaa gacacaggat
     1921 acagtgcctc gagcccccca cctccgagag ctctcacagc agagacagga caaggggtgg
     1981 atctgtacaa ggtgctgggg agcaagggcc ccgactcaac accgggaaac ccagccagcc
     2041 cctcgacagt cctcccagtg gactaccttc ctgcccatga aggctactta ccctccaaca
     2101 tagattatct cccttcacat gagcctccca taactgaccc tcaggaagaa ctgcctcggc
     2161 acatctctct ttccattttc ccctcgagtt cccttcaccc actcaccttc tcctgtggtg
     2221 agaagctgac tctggatcag ttaaagatga ggtgtggctc cctcatgctc tgagtggcaa
     2281 agcttga
//
LOCUS       XM_032652673            2286 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 12 receptor subunit beta 2
            (IL12RB2), transcript variant X4, mRNA.
ACCESSION   XM_032652673
VERSION     XM_032652673.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2286
                     /gene="IL12RB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764238"
     CDS             146..2272
                     /gene="IL12RB2"
                     /codon_start=1
                     /product="interleukin-12 receptor subunit beta-2 isoform
                     X3"
                     /protein_id="XP_032508564.1"
                     /db_xref="GeneID:116764238"
                     /translation="MWGRDLRWWLKGPKNLTWQKQCNDHYCDHLDLGINLTPESPESS
                     YTAKVTAINSLGSASSFPSSFTLLDIVRPLPPWDIRIKFVNASVSRCTLQWRDEGLVL
                     LNRLRYRPINSRSWNMVNATNAKGRHDLLDLKPFTEYEFQISSKLHLYKGSWSDWSES
                     LRTQTPEEEPTGTLDVWYMRQHIDYNRQQISLFWKNLSLSEAKGKILHYQVTLQEVAG
                     GKATLQNITERTSWTWVIPRTGNWAVSVSAANSKGSSLPTHINITDLCGAGLLAPQQV
                     SANSEGVDNLMVTWTPPGKAATAVQEYVVEWRELHPGASTQPPLGWLWSPPYNLSALI
                     SENIKPYICYEIRVHALSGDQGGCNSIRGNSKHKAPLSGPHINAISEEKGSILISWNE
                     IPAREQMGCILHYRIYWKEQDSNSQPQLCEIPYRVSPNSHPIDSLRSRVTYILWMTAL
                     TAAGESPQGNEREFCLQGKANWSTFVAPSICLGVIMVGVLSVRCFRQKVFVLLLALRP
                     QWCSKEIPDPANSTWAKNFVEEKTQLALDRLLTDCPTPEEPETLVINKVLHQVTPAFR
                     RSHHPNWPEKGQGVQGHYTSEEDTGYSASSPPPPRALTAETGQGVDLYKVLGSKGPDS
                     TPGNPASPSTVLPVDYLPAHEGYLPSNIDYLPSHEPPITDPQEELPRHISLSIFPSSS
                     LHPLTFSCGEKLTLDQLKMRCGSLML"
     misc_feature    362..640
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(362..364,548..550,602..604)
                     /gene="IL12RB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(605..610,614..619)
                     /gene="IL12RB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    959..1216
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    1253..1537
                     /gene="IL12RB2"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1253..1255,1460..1462,1505..1507)
                     /gene="IL12RB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1508..1513,1517..1522)
                     /gene="IL12RB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
ORIGIN      
        1 ttaacaagtt aatcctctac aagtttgaca gaagaatcta ttttcagcat ggtcactcac
       61 tcagctcaca agtcacaggt cttcccctgg gtacaaccct gtttgtctgc aaactggcct
      121 gtagcagtaa tgacgagatt cgaatatgtg gggcagagat ctccgttggt ggttaaaggg
      181 acccaaaaat ttaacttggc agaagcaatg taatgatcac tattgtgatc atttggacct
      241 tggaattaac ctaacccctg aatcacctga atctagttac acagccaagg ttactgctat
      301 caatagtctt gggagtgctt cttcattccc atcctcattc acattgttgg acatagtgag
      361 gcctcttcct ccgtgggaca tcagaatcaa atttgtaaac gcttccgtga gcaggtgtac
      421 ccttcagtgg agagatgagg ggctggtgct gcttaatcga ctcagatacc ggcccattaa
      481 cagcaggtcc tggaatatgg ttaatgccac aaatgccaaa ggaagacatg atttgctgga
      541 tctgaaaccc tttacagaat atgaatttca gatttcctct aagttacatc tttataaagg
      601 tagttggagt gattggagtg aatcattgag aacacaaaca ccagaagaag agcctactgg
      661 aacattagat gtctggtaca tgagacagca cattgactac aatagacaac agatttctct
      721 tttctggaag aatctgagcc tatcagaggc aaaaggaaaa atcctccact atcaagtgac
      781 cttgcaggag gtagcagggg gaaaagccac actacagaac atcacagaac gcacctcctg
      841 gacctgggtc attcccagaa ctgggaactg ggctgtgtcc gtgtctgcag ctaactcgaa
      901 aggcagttcc ttgcccactc atattaacat aacagacctg tgtggggcag ggttgctggc
      961 tcctcaacag gtctcagcaa actcagaggg cgtggacaac ctcatggtga catggacacc
     1021 tccagggaaa gctgccactg ctgtgcagga gtatgtggtg gaatggaggg aactccatcc
     1081 gggggccagc acgcagcccc ctctaggctg gttgtggagt cccccctaca acctgtctgc
     1141 tctgatttca gaaaacataa aaccctacat ctgttatgaa atccgcgtgc atgcactttc
     1201 aggggaccag ggaggatgca actccatccg gggtaactct aaacacaaag caccactgag
     1261 tggcccccac attaatgcca tctcagagga aaaagggagc attttaattt catggaatga
     1321 aattccagcc cgggagcaaa tgggctgcat cctccattac aggatatatt ggaaggaaca
     1381 ggactccaat tcccagcctc agctttgtga aattccctat agagtctccc caaattctca
     1441 tcccatagac agcctgcggt ccagagtgac atacattcta tggatgacag ctctgacagc
     1501 tgctggtgaa agcccccaag gaaatgaaag agaattttgt ctgcaaggta aagccaattg
     1561 gagcacattt gtggcaccaa gcatttgcct gggtgtcatc atggtgggcg ttctctcagt
     1621 gcgttgcttc cggcaaaagg tatttgttct ccttttggcc ctcagacctc agtggtgtag
     1681 caaagaaatt ccagacccag cgaatagcac ttgggccaag aactttgtgg aggagaagac
     1741 gcagctggcc ttggataggc tcctgacaga ctgtcccact cccgaggaac ctgagaccct
     1801 ggtcatcaac aaagtccttc accaagtgac cccagccttc agacgttccc atcaccccaa
     1861 ctggccagaa aagggacaag gagtccaagg tcactatacc tctgaggaag acacaggata
     1921 cagtgcctcg agccccccac ctccgagagc tctcacagca gagacaggac aaggggtgga
     1981 tctgtacaag gtgctgggga gcaagggccc cgactcaaca ccgggaaacc cagccagccc
     2041 ctcgacagtc ctcccagtgg actaccttcc tgcccatgaa ggctacttac cctccaacat
     2101 agattatctc ccttcacatg agcctcccat aactgaccct caggaagaac tgcctcggca
     2161 catctctctt tccattttcc cctcgagttc ccttcaccca ctcaccttct cctgtggtga
     2221 gaagctgact ctggatcagt taaagatgag gtgtggctcc ctcatgctct gagtggcaaa
     2281 gcttga
//
LOCUS       XR_004352821            3845 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764252
            (LOC116764252), ncRNA.
ACCESSION   XR_004352821
VERSION     XR_004352821.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3845
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3845
                     /gene="LOC116764252"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764252"
     ncRNA           1..3845
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764252"
                     /product="uncharacterized LOC116764252"
                     /db_xref="GeneID:116764252"
ORIGIN      
        1 cgactttcca aacttcaagc tttgccactc agagcatgag ggagccacac ctcatcttta
       61 actgatccag agtcagcttc tcaccacagg agaagatctc caaagcctgc tttcatgaag
      121 cccctagtga ctgttccctc cactggattc ctacaacagc aaagaagcca cctgttaggt
      181 tcttagcaca agaagcttta tgctgtcact tttttttttt ttttaacatg tctgtaagct
      241 atctgcaagt agggaccatg ccttaaggga ggaggagaat aacaaaaaat agcattagga
      301 cagggcaaac cctgaggact agtcccaact cggagactct acagcttggg aaaactcagt
      361 ctacttgtct ggcctttgga tccctcatct gtcggatgcc aagttgtgca agaatggttt
      421 ggtttggact ggcctctgat gtccccaccc ttgccttgag catggcaatt gtccccaaag
      481 tgaatgacga tgctgtctta gggtagactt ctgcaaaggg cgctgagcag ccagagggta
      541 cgtgtgtact tttctttcgg gagcctgctt tttccctatt gctatgcaaa ctggccctgg
      601 cacattggtg tggcttggaa cgtgactggc agcggcctaa gtgctgagac cactgctatg
      661 gaagagatct cactggataa ggatcacgtt gttttcacag tgcgaggctc tgccttcttg
      721 aaagctctgg cagtatcaat agaggctgtt cctcagagct tttacaaagc agcccccctg
      781 gctgacaagt cctggggcaa ggcgtcttgg accactaata actcaggtac atcatggaaa
      841 ctattttaag cttttacaag ctcaaaatag ataacatccc agtgatcccc tttatgactg
      901 ggccttttcc tctacagctt taagacccat ggctttttag ccacatttta agaagtggta
      961 gggggatgta cagtctgaga acttaaagca cattttgttg gaggtgaaag actgttgtgt
     1021 ttctgatgtc tgccccagcc tgtcaccagg agagcagttt gggtctttaa aaacagttta
     1081 ccccttcaag ggtcaagtga catggggttc tgaggctgcc acaaggccat catagatggc
     1141 atgtttaatt ttttttttaa ttttctaatt tactggttat ttttgcaaaa gaaatatatg
     1201 cacatagttt tgtaaaacaa aaattttaag ttcaaaggga atttgtaata aaaattaagt
     1261 gggcttcatg cctacagctg cctccccaaa ggcaaccacc attatcagtt tcatatttag
     1321 gcttccagaa atatcctgtg cacatgttgg agattgtgtg tgtgtgtata aaatcatctt
     1381 tttatacaaa tgagaaccca ctttagacaa ttagtacaaa ctttgctttt tttcactttt
     1441 aaatatatta gagatgttag acacatacag atctcatttt tttttagtag ttgcataaca
     1501 tcctgttgta cagatatacc caaatgttta acctagcccc ctggtggccg gttacgttat
     1561 ggcttctgtt tataatgctg cagtgaacat actcatactg tacaactttg ggcatgtgta
     1621 tggcaatttc tgttactttt tccacgtgtt actttctcta actctttgtc tttctcagca
     1681 tctcttctag gcttttatgg gctcttcagt ggctctgcat gcctctgtat cccctcatgt
     1741 ccaggcagtg gcaaatagag gccatgatgc cacagctacc agcttgggag ccaggtgtca
     1801 gcgactgacc cagagctgct tctcactgtg ctatttcagg cttttaggac atgggactgt
     1861 ggaatctccg cattggaaga gagagatctt agagctcagt tgattcagtt cctggtacct
     1921 gaatcccctc taatactagc agtggcatcc ttattgagtg ccttcccata ggtcatcaca
     1981 atattgccac caagtgaggg cccagtgtgt gaacacctct tgagttagtc tgttcagctc
     2041 agaggttttg actgctggaa acacacccct caccctgtgc ttaagatctt ttagaacgta
     2101 tagtataatg gaggacagca catcctgctt gtatgtgaat ccagggtcca cttactagct
     2161 gactaacact gggcaagtta ctgagtcctc tgtccctcac tttcctcatc tgaaaaatgg
     2221 ggataataat attacaatct cataaagctg ttgtacagat taggtgttaa tgcatgaaaa
     2281 ttttttttta agtgcctggc atagagaaag taatgtatgt tatgtgtata tataaatgta
     2341 aatatattat tatgtaatac tgttgtatat catatataat tatatgtcat gtataatcaa
     2401 atatatatca aacatctatc atatatacga catatacacg cacatacata tactgttatt
     2461 attatactgt tcttgctact gtaacttaac agcaacaaaa ctcctcaata gagagaggag
     2521 acttcaagtg taaatcttcc tgggaagaaa atgaatgatc tttgccttgt atgagccgtg
     2581 tgctttacat ggcatcttac ttagtcttca caacaatata tatgagagat actgtcaatt
     2641 cctatcttac ggaggatgaa actaaggctc gtgtcatcgg gcaagcgctc aagggtcatt
     2701 gacatagtaa gtggcagagg tggccttatt tcaaaggcat taaactgcgg tgacttaact
     2761 tcctacggag acagacatgg ctgggaccag ctctttctct gagaggcggc tggtaccact
     2821 ggcttctgga tgaggcatgg gtgaccgaag agaagaatct tggaggagga gggctatatg
     2881 atgcgagagt gcggggctgc caaggcgccg ggtgatggga agaatgtgga cacccctctc
     2941 ctccccttca agaccctccg tcagagacag accctgctgc ccgctgtgag ctgctcttcc
     3001 ctcctaggac tgtgtcagcc gctccctgcg tgtcctttac tcccagcatg ctcctctgcc
     3061 agctgagcaa cctctcctgc cttcaaacct tttccttgca caatggaatg acttactggc
     3121 ttcctgccaa gaccaaaata gtctgggctc tatttatctg ttctgtgctc acacaggacg
     3181 gggaacatca cagtaaagct tcagtgctct tgaatttgga tgagccaatg ctcagactag
     3241 tgcttggcaa atatatttgc ttttaaaatt tcttttgaag tgagttgagg tgaggagagg
     3301 aacagaaggc atagagagga atgaaaagtt atgggtcttt tagtcttggt cataagcttc
     3361 agaaaattcc tgtgcatggg agtgatgact cagatggtaa cctagcactc gtgataagca
     3421 gcttatccat aggatctaac caccggggtt tccctgtact acaatgaaag acttagatgt
     3481 actgatcacc agaaccccat cgactgacca ctaaggcttt ataccttacc tccacaaagt
     3541 tcttggccca agtgctattc gctgggtctg gaatttcttt gctacaccac tgaggtctga
     3601 gggccaaaag gagaacaaat accctgcagg taaaagaaaa cagtggcatt ggttaagtgg
     3661 gcacacggtg gcctggaagc acagtgactt cagtgtaggg gtatgcaaat gagtaaactg
     3721 taaacactgc aggagaaaga tgatgcatca tccaagtctg gactagtttt ctgtgaagtt
     3781 tggatagatg ataaagactc gtggtgcaac gacttagggt ttgctaaata aactatggaa
     3841 ctttt
//
LOCUS       XR_004352823            1388 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764256
            (LOC116764256), transcript variant X1, ncRNA.
ACCESSION   XR_004352823
VERSION     XR_004352823.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1388
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1388
                     /gene="LOC116764256"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764256"
     ncRNA           1..1388
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764256"
                     /product="uncharacterized LOC116764256, transcript variant
                     X1"
                     /db_xref="GeneID:116764256"
ORIGIN      
        1 caggagagct ggacccaaag gtgcaccctc tgtggcaacc ctctgtgcat ctctgaccaa
       61 ggatgcgggc tccacaaggg taaaggtctt tggtgttctg ttcatcaccg tctcctcagg
      121 acccaggaca gggcctggcg tgcagaaggc actcagtatt tatcaaaaga aagttgaatg
      181 gatgcgagtg tggccctctg gcctgcagcc tgatcctgag agcacgataa gccctagaga
      241 gatggatccc gaccccctcc caacctctac ggaagctggc agccagcact ctctccagga
      301 gccagggcca ccagccttca cagccctgtt gtagcacaga cacctcttgg tgcagaggaa
      361 gcaccactgc acaagcaatc aggagacttg ggctccatca cttcaaatca ttactaagca
      421 cctactactt gccaggcgct atcttcagga ggcaagggct ctgcctcatg gggcttctat
      481 tctaataggg gaggctgttg atgaacaaac acatgcctga gatcattaca gatgatgaca
      541 gcaagcaggg taatgggaca gatgatggct gaacaggtta gtttgagtcg tgaggagggt
      601 ggaaccaagg agggcctctc tgaagaggtg acattggagc tgtgatctgt atgtgagaag
      661 gcggcagccg tgtaaaaatc tgagagaggt gtggtccctc cctgggaagt agcaagtgca
      721 aaggtcctga ggcagaaatg agcttgtgtt tgggcaaata tgaccggcga gagggacaag
      781 aggaagagta taaaaagagt ctccttccct ttgtcattat ctctgtggga tttgagtaca
      841 tcttatctcc ttatttgacc cctaaatttt ggacatctct aagtttaaac aaacctttct
      901 tggtcctatt tccaattttt attttaacat ctttcgtaca gaggacagga tattattagt
      961 ctgagagtca gaagacctaa attatggccc cagagtttcc agtagtgagc agtgtgacct
     1021 tggacaaatc ccttttctca tctttaaacc aggagattgg accacaagct ccaaaggccc
     1081 ttctggctga gacatcccag caccgggaat tcatgttaac tcttcttgat cctatttatt
     1141 ttcagcccac atgtggatct gctcagcata catctgctcc ttcttccagg atctgcgcgc
     1201 atttattaga tgcttttaaa cacaagagac aacctgtaca gacattagca ggagatggtc
     1261 gaatatatca tgcagctatt aaaagaagaa tgagttacac tgaaatcccc tgagctggac
     1321 ggaagcgcac gatgtaagcg ataaaactag ctgtgggatg ttagagaaag actcccgatt
     1381 ttgtgaaa
//
LOCUS       XR_004352824             819 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764256
            (LOC116764256), transcript variant X2, ncRNA.
ACCESSION   XR_004352824
VERSION     XR_004352824.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..819
                     /gene="LOC116764256"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764256"
     ncRNA           1..819
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764256"
                     /product="uncharacterized LOC116764256, transcript variant
                     X2"
                     /db_xref="GeneID:116764256"
ORIGIN      
        1 caggagagct ggacccaaag gtgcaccctc tgtggcaacc ctctgtgcat ctctgaccaa
       61 ggatgcgggc tccacaaggg taaaggtctt tggtgttctg ttcatcaccg tctcctcagg
      121 acccaggaca gggcctggcg tgcagaaggc actcagtatt tatcaaaaga aagttgaatg
      181 gatgcgagtg tggccctctg gcctgcagcc tgatcctgag agcacgataa gccctagaga
      241 gatggatccc gaccccctcc caacctctac ggaagctggc agccagcact ctctccagga
      301 gccagggcca ccagccttca cagccctgtt gtagcacaga cacctcttgg tgcagaggaa
      361 gcaccactgc acaagcaatc aggagacttg ggctccatca cttcaaatca ttactaagca
      421 cctactactt gccaggcgct atcttcagga ggcaagggct ctgcctcatg gggcttctat
      481 tctaataggg gaggctgttg atgaacaaac acatgcctga gatcattaca gatgatgaca
      541 gcaagcaggg taatgggaca gatgatggct gaacagccca catgtggatc tgctcagcat
      601 acatctgctc cttcttccag gatctgcgcg catttattag atgcttttaa acacaagaga
      661 caacctgtac agacattagc aggagatggt cgaatatatc atgcagctat taaaagaaga
      721 atgagttaca ctgaaatccc ctgagctgga cggaagcgca cgatgtaagc gataaaacta
      781 gctgtgggat gttagagaaa gactcccgat tttgtgaaa
//
LOCUS       XM_032652705           10746 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus abnormal spindle-like
            microcephaly-associated protein homolog (LOC116764264), mRNA.
ACCESSION   XM_032652705
VERSION     XM_032652705.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10746
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10746
                     /gene="LOC116764264"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 29 long SRA reads, 12
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116764264"
     CDS             206..10594
                     /gene="LOC116764264"
                     /codon_start=1
                     /product="abnormal spindle-like microcephaly-associated
                     protein homolog"
                     /protein_id="XP_032508596.1"
                     /db_xref="GeneID:116764264"
                     /translation="MATRRRGRDRWERSPPEPRPRGSRAEEEAASPPVLSLSHFCRSP
                     FLCFGDVRLGASRTLPLALDNPNEETTAVRLSRGPAAECGFTVWPSAFVLQPKEKIVI
                     SITWTPLKGGRVREIVTFLVNDVLKHQAILLGNAEEPKKKKRSLWDTINKKKVSASSG
                     HNQKISNIQNVDKTFNVSSKFDRVRSPLQACENLATNESCSPTENNSLNLEENKIPIS
                     PISPTFQECHGETCLPVSVHQSTTYTSLPASENGEVLKVEGANIVNDFHFNETVITET
                     SFDSINNLSDQIEENSKLTLTPNYSSTLNITQSQGNFLSPDSFVNNSRAANNERELVM
                     CLSPGMCVKGNSRPVILESKSVCEIYRTILSPDSFINDNYGLNQDLGSESINPILSPN
                     QFLKDNMAYICVSQQTCKLSPLSNVNSQASQPSQDERKNEVLPCIPECQCSKSPKATF
                     EESKALEMKSNCYTFKKRNQPKFSAVQDISSHNHDKPLKRRPILSATVTKRKPTCARE
                     NQTEADKPKAKRCLSVVVGECEKETDDHKEKGDFHSFLPARDLILSRPKSCKNVITPP
                     SKVALVARKRKSEGNTEDANLKVTVTEYTEVQEIKRIHYSPVESKTSTVKNTKKVITS
                     TSKCISNREKLKLKKKTESLGHRTPNLKKNKKTKPIVPVAQSNLTFIKPLKTGIPRHP
                     MPFAAKNMFYDERWKEKQEQGFTWWLNFILTPDDFTVKTNISEVNASTLLLGLESQHK
                     ISVPRAPTKDEVSLRAYTARCNLNRLRRAACRLFTSEKMVKAMKKLEIEIEARRLIVR
                     KDRHLWKDVGERQKVLNWLLSYNPLWLRIGLETIYGELIPLEDNSDITGLAMFILNRL
                     LWNPDIAAEYRHPTVPHLYGDGHEEALSKFTLKKLLLLVCFLDYAKISRLIDHDPCLF
                     CKDAEFKASKEILLAFSRNFLGGEGDLSRHLSFLGLPVNHVQTPFDEFDFAVTNLAVD
                     LQCGVRLVRTMELLTRNWNLSKKLRIPAISRLQKMHNVDIVLEVLKSRGIQLNDEHGN
                     TILSKDIVDRHKEKTLALLWKIVLAFQVDISLNLDQLKEEIDFLKHTQSMKRKMSALS
                     CHSDAVISKKKDKRHSGHFEQYSESVKLLMDWVNAVCDFYNKKVENFTVSFSDGRVLC
                     YLIHHYHPCYVRFAAICQRTTQTVECTQTGSVVLNSSSESDESSLDLSLKALDQENTS
                     ELYKELLENEKKNFQLVRSAARDLGGIPAMIHHSDMSNTIPDEKVVITYLSFLCARLL
                     DLRKETRAARLIQTTWRKYKLKKDLKRHQKRDKAARIIQSAVINFLTKGRFKKEVNAA
                     LVIQKYWRRLLAKRKLLMLKKEKLEKVQNKSASVIQRYWRRYSTRKQFLKLKYYSIIL
                     QSRIRMIIAVASYKRYLWAAVTIQRHWRACSRRKQDQQRYEMLRSSTLIIQSAFRRWR
                     QRKMQLQTEAAITLQIAFRERCVRKQVKEEKAAMVIQSWYRMQRELRKYIHIRSCVVI
                     IQTRFRCFQAQKLYKRKKESILSLQKYYKAYLKGKVERTSYLQKRAAAIRLQAAFRGM
                     KARKLRKQITAACVFQSYWRMRQDRLRFLNLKKNIIRLQAHIRKHQQLQKYKKMKKAA
                     LVIQIHFRAYISAKKVLASYQKTRSAVIVLQSAFRGVQARKKFIHILTSVIRIQSYYR
                     AYVSRKNFLRLKNAAVKLQSIVKMKQTRKQYLHLRAAALKREEHMRASCIKLQAFVRG
                     YLVRKQVRLQRKAAVSLQSHFRMRKMRLYYLKIYKATVVIQSYYRAYKAQVNQRKNFL
                     QVKRAVICLQATYRGYKVRQLIKQQSTAALKIQTAFRGYSKRMKYQSVLQSTLKIQRW
                     YRTHKTASDIRTHFLKTRAAVISLQSAYRGWKVRKQIRREHQAAVKIQSAFRMAKAQK
                     EFGLLKTAASVIQQHLRARAAGRRERLEYTALRLAAVMLQSTWRGRAARRQVQKQHKC
                     AVLIQSCYRMYVQRKKWKIMKKAACLIQMYYRAYSTGRKQHHLYLETKAAVVILQSAY
                     RGMRVRKKIKEHHKAAAAIQSSYTAYQTKKKYATYRASAVIIQRWYRDTKIADRQRKE
                     YLTLKKAAVKIQAVYRGVTVRRQTQHLHAAATLIQAVFKMQQSRRRYHQMRTAAVIIQ
                     VRYRAYHQGRTQRAKYLTTLKAVTILQASFRGGRVRQTLRRMQTAATLIQSHYRRHRQ
                     QAYFNKLKKVTRLVQQKYRAVRERNIQFQRYNKLRHSVICIQAAFRGMEARRHLKVMH
                     SAAAMIQRRFRTLMMRRRFLSLRNTAVWIQRKYRANVCAKHRLQQLLRLQKAALKIQS
                     WYRGWVVRKKVQEMHRAATVLQAAFRRHRAHVRYQAWRHASRVIQQQYRASRAKPLQR
                     QLYLQQRHSAVVLQAAFRGMQARRHLKRMHASATLIQSRFRSLVMRKRFLSLKKAAIF
                     VQRKYRATICAKHHLHQFLELQKAVITIQPSYRRLMAKKKLQEMHRAAALIQATFRMH
                     RTHLTFQTWKHASILIQQHYRAYRAAKLQREHYVQQRHSAVVIQAAYKGMKARQLLRE
                     KHRAAVIIQSTYRMYRQYFFYQKLQWATKVIQERYRANKKKALQHNALKKAATCVQAD
                     FQDMIIRREIQEKRHQAAITLQKHFRAFKTRKHHLHFRAKAVFVQRRYRTLVAVQTQA
                     VICIQSYYRGFKARRGIQLMHLAATRIQSFYRMYRARMDYQAKRMAIVVIQNYYRSYA
                     RVKMERKKCLAIQKSVRPIQAAFSGMKVRQKFKNMPEVKMAVPATQSAFCCHRTETQY
                     EAGQSPALTVQRQCKASLVGPLQEAEYPSERKAAVTIQKAFRKMVTRRLEKHKRAAVR
                     IQSFLQMAVYRRRFIQQKRAAVTLQRHFRKRQTRKQFSLYGEAAVVLQNHHRAFLSAK
                     RQREVYLQIRSSVIVIQARMEGFIQKRKFQKIKDSTIKIQTAWRRHKARKYLREVKAA
                     CEIQAWYRCWKARKDYLAVLRAVRIIQGCFCTKLQRRRFLNVRASTIIIQRKWRAVLS
                     GRTAHEQFLMTKGYQAACLIQANFRGYKGRQVFLQQKSAALTIQRYIRARKTGKCERI
                     KYVELKKSTVVLQALVRGWLVRKRILEQRAKMRLLHFTAAAFYHLSALRIQRAYRLHR
                     ALKNADDKQVNSAICIQRWFRARLQHKRFLQKHRFMKIQNEAQERMSQQNRAASVIQK
                     AVRRFLLRKKQEKLNNRVTKIQALWRGYSWRKKNDCTKIKAIRQRLQCVNREIREENK
                     LYHRTALALHYLLTYKYLSAILEALKHLEVVTGLSSLCCENMAQSGAISKIFVLIRSC
                     NRSVPCMEVIGYAVQVLLNVAKYEKTTSAVYDVENCVDTLLELLQMYQEKPGDKVADK
                     SRSIFTKTCCLLAVLLKRTNRASDVRSRSKVVDRIYSLYKLTAHKHKVNTERILCKQK
                     KKSMSISFIPETPVRTRMVSRLKPDWVLRRDNLEEIMNPLKAIQMVMDTLGIPY"
     misc_feature    302..595
                     /gene="LOC116764264"
                     /note="Abnormal spindle-like microcephaly-assoc'd,
                     ASPM-SPD-2-Hydin; Region: ASH; pfam15780"
                     /db_xref="CDD:464865"
     misc_feature    3026..3364
                     /gene="LOC116764264"
                     /note="first calponin homology (CH) domain found in
                     abnormal spindle-like microcephaly-associated protein
                     (ASPM) and similar proteins; Region: CH_ASPM_rpt1;
                     cd21223"
                     /db_xref="CDD:409072"
     misc_feature    order(3035..3037,3047..3049,3218..3220,3224..3229,
                     3236..3241,3245..3247,3287..3313,3326..3328,3332..3337,
                     3341..3346,3353..3358)
                     /gene="LOC116764264"
                     /note="putative actin binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:409072"
     misc_feature    3545..3991
                     /gene="LOC116764264"
                     /note="second calponin homology (CH) domain found in
                     abnormal spindle-like microcephaly-associated protein
                     (ASPM) and similar proteins; Region: CH_ASPM_rpt2;
                     cd21224"
                     /db_xref="CDD:409073"
     misc_feature    order(3554..3556,3842..3844,3848..3853,3860..3865,
                     3869..3871,3896..3922,3941..3943,3947..3952,3956..3961,
                     3968..3973,3980..3982)
                     /gene="LOC116764264"
                     /note="putative actin binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:409073"
     misc_feature    <4010..>4387
                     /gene="LOC116764264"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <4250..>4663
                     /gene="LOC116764264"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <4799..>5338
                     /gene="LOC116764264"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <5456..>5947
                     /gene="LOC116764264"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <5996..>6538
                     /gene="LOC116764264"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <6560..>7129
                     /gene="LOC116764264"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <6989..>7489
                     /gene="LOC116764264"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <8558..>9037
                     /gene="LOC116764264"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
ORIGIN      
        1 gcgggaagtt taaacagagc aaacaacctg cgctgtttgc tcctgtttcc agtttgcgag
       61 tctgtgtgtc cggcttattt accgggtccc ggcgatcgca cgagaaaggg ggcgaattcg
      121 ctccaattcc cccagcttcc cgagaggaca cggtgggcgt tcctgcacgg cggctcggag
      181 cagcccgttg ggcccagagg ccgccatggc gactaggcgt cgggggcgcg accgctggga
      241 gcggagcccc ccggaaccga ggccgcgggg ctcccgggcc gaggaggagg cggcctcccc
      301 gccggtcctg tccctcagcc acttctgcag gtcgcccttc ctctgcttcg gggacgtgcg
      361 cctgggagcc tcgcggacgc tgcccctggc cctggacaac cccaacgagg agacgaccgc
      421 cgtgaggctg tcccgtggcc cggccgccga gtgcggcttc accgtctggc cgagcgcctt
      481 cgtgctgcag cctaaagaaa aaattgttat ttctattacc tggacaccgt taaaaggagg
      541 ccgagtaaga gagatcgtga catttcttgt aaatgatgtt ctgaaacacc aagctatatt
      601 actaggaaat gcagaagagc cgaaaaagaa aaagaggagt ctttgggata ccattaataa
      661 aaagaaagta tcagcctctt caggtcataa ccagaagatt tcaaatattc aaaatgtaga
      721 taaaacattt aatgtttcct caaaatttga cagagttagg agcccactac aagcatgtga
      781 gaatctggct acgaacgaaa gctgttcccc aacagaaaac aattctttaa accttgaaga
      841 aaataaaata cccatatcac ctatcagtcc cactttccaa gagtgccatg gggagacctg
      901 cttgccagtt tctgtccatc aatctactac ctacacatcc cttcctgcat ctgaaaatgg
      961 ggaagtatta aaagtagaag gtgccaacat tgtaaacgat tttcatttta atgagacagt
     1021 cataactgaa acttcctttg actccataaa taatcttagt gaccaaattg aagagaacag
     1081 taaacttact cttaccccaa actattcttc aacattgaac atcacacaaa gccaaggaaa
     1141 ttttctaagt ccggattcct ttgtgaataa cagccgtgca gctaataatg aacgagaatt
     1201 agtgatgtgt ctttcaccag gtatgtgtgt gaaaggtaat tcaaggcctg tgattttgga
     1261 gtcaaaaagt gtatgtgaaa tttatcggac aattttaagt ccagattctt tcataaatga
     1321 taattatgga ctaaatcagg atctaggatc agagtcaatt aatccaattc tatccccaaa
     1381 tcaattttta aaagataata tggcatacat atgtgtatct cagcaaacat gtaaattgtc
     1441 accattatca aatgtaaatt ctcaggcctc acaaccttct caggatgaga gaaaaaatga
     1501 agttttacct tgtattcctg aatgtcagtg ttcaaaatct ccaaaagcta cttttgaaga
     1561 atccaaagct ttagaaatga agtcaaattg ttatactttt aagaaacgga accagcctaa
     1621 attttctgca gttcaggata tttctagtca caaccatgat aaacctctta agagacgccc
     1681 aatactttct gccactgtta ctaaaagaaa gcccacttgt gccagagaaa accaaacgga
     1741 ggctgataaa ccgaaggcaa aaagatgtct cagtgttgta gtgggtgagt gtgaaaaaga
     1801 aacagatgat cacaaagaga aaggtgattt tcattctttt cttccagcta gagatttaat
     1861 actgagtaga cctaagagtt gtaaaaatgt gataactcct ccctcaaagg tagctttagt
     1921 tgctcgtaaa agaaagagtg agggaaacac agaagatgca aatttgaagg ttacagttac
     1981 agaatacaca gaagtacaag aaatcaaaag gatccattat tctcctgtgg agtccaaaac
     2041 atcaactgtt aaaaacacaa agaaagtgat aacctccacc tcgaaatgta ttagcaacag
     2101 agagaaatta aagctgaaga agaaaactga gtctttagga cacagaactc ctaatttaaa
     2161 aaaaaacaaa aagacaaaac ccattgttcc tgtggcacaa tctaatttga ccttcataaa
     2221 accactaaaa acaggtattc ctagacaccc aatgccgttt gctgcaaaaa acatgtttta
     2281 tgatgaacgc tggaaggaaa agcaggagca gggctttact tggtggctaa attttatatt
     2341 aactcctgat gacttcactg taaaaacaaa tatttctgaa gtaaatgctt ccactcttct
     2401 tttgggactg gagagtcaac ataaaataag tgtcccgaga gctcctacca aggatgaagt
     2461 gtctctcaga gcttataccg ctcgctgcaa tttgaataga ttacgtcgtg ctgcgtgtcg
     2521 cttatttact tctgaaaaaa tggttaaagc tatgaaaaag cttgaaattg aaattgaagc
     2581 taggcggtta attgttcgaa aagacagaca cctctggaaa gatgtgggag aacggcagaa
     2641 agtcttgaat tggctgttgt catataatcc tttgtggcta cgaatcggcc tagagacaat
     2701 atatggagaa ctcatccctt tggaagacaa cagtgacatc acagggttgg caatgtttat
     2761 tctgaatcgc ttgctttgga atcctgatat tgcagccgag taccggcacc ctaccgttcc
     2821 tcatctatat ggagatggtc atgaagaagc tttgtctaag tttacattga aaaagctatt
     2881 gctgctggtt tgtttccttg attatgctaa aatctccaga cttattgatc acgatccttg
     2941 tctcttctgt aaagatgctg agttcaaggc tagtaaagaa attcttctgg ctttttcacg
     3001 aaacttccta ggcggtgaag gtgacctttc ccgtcacctg agcttcctgg gattacctgt
     3061 gaaccatgtt cagacacctt tcgatgaatt tgattttgct gttacaaatc ttgctgtaga
     3121 cttgcagtgt ggggtgcgtc ttgtgcgaac catggaactt ctcacacgaa actggaatct
     3181 ctcaaagaaa cttaggattc ctgcaataag tcgtcttcaa aagatgcaca atgttgacat
     3241 tgttcttgaa gttcttaaat cacgaggaat tcagttgaat gatgagcatg gaaatacaat
     3301 cctctctaag gatattgtgg ataggcacaa agaaaaaact ctggctttgc tttggaagat
     3361 agtattggct tttcaggtgg atatttccct taatttagat cagttaaagg aagaaattga
     3421 ctttttaaag cacacacaga gtatgaagag aaaaatgtct gcactgtcat gccattctga
     3481 tgctgttatc agtaagaaaa aagacaaaag gcatagtggt cactttgaac aatatagtga
     3541 aagcgtaaag ctactgatgg attgggtaaa tgctgtctgt gacttctata ataaaaaagt
     3601 ggagaatttt acagtgtctt tctcagatgg ccgggtgtta tgttacctga tccaccacta
     3661 ccatccttgc tacgtgcgtt ttgctgccat atgtcagcgt accacccaaa ccgtagagtg
     3721 tacgcaaact ggttctgtgg tgttaaactc atcatctgaa tctgatgaaa gttccctgga
     3781 tttgtctctt aaagcacttg atcaggaaaa tacttcggaa ctatacaaag aactcctaga
     3841 aaacgaaaag aagaattttc agttggtcag gtctgcagct agagacctcg gtggaatacc
     3901 tgctatgatc catcactcag atatgtcaaa tacaattccc gacgagaagg tggttattac
     3961 ctatctgtca tttctttgtg cgaggctttt ggatcttcgt aaagaaacga gagccgctcg
     4021 acttatacaa acaacttgga gaaaatataa gctaaaaaag gatctaaaac gccatcagaa
     4081 gagagacaaa gctgcaagaa ttattcagtc agctgtaatc aattttctaa ctaaaggacg
     4141 attcaaaaag gaggtcaacg cagcattggt cattcagaaa tattggcgaa gactcttagc
     4201 gaagagaaaa ttattaatgt taaaaaagga aaaactagaa aaagttcaaa ataaatcagc
     4261 atctgttatt cagagatatt ggagaagata ttccactaga aaacagtttc tgaagctgaa
     4321 atattattca atcatcctgc aatctaggat aagaatgatc attgctgttg cttcttacaa
     4381 acgatacctt tgggctgcag ttacaattca gaggcattgg cgtgcttgtt caagaagaaa
     4441 gcaggatcaa cagagatatg aaatgctaag atcatcaacc cttataatcc agtctgcgtt
     4501 cagaagatgg aggcaacgta aaatgcagct acaaacagaa gctgcaataa cactgcaaat
     4561 agcttttaga gaacggtgtg tcaggaaaca ggttaaagaa gagaaagctg ccatggtcat
     4621 acaatcctgg tacaggatgc agagagaatt acggaaatac attcatatta gatcttgtgt
     4681 tgtcatcatt cagacaagat ttcggtgctt tcaagcccaa aagttatata aaaggaaaaa
     4741 agagtctatc ctctctctcc agaagtacta caaagcatat ctgaaaggaa aggttgagcg
     4801 caccagctat ttgcagaaac gggctgcagc catccgacta caggccgctt tcaggggaat
     4861 gaaagctcgt aagttacgca aacagatcac cgctgcttgt gtctttcagt catactggag
     4921 aatgagacag gacagacttc gatttctaaa ccttaagaaa aatattatca gattgcaggc
     4981 acacatcagg aagcatcaac aactacagaa atataagaaa atgaagaaag ctgcccttgt
     5041 aattcagatt cattttcgag cttacatttc agccaagaaa gttctagctt cttaccagaa
     5101 gacacgatct gctgtcattg ttctgcagtc tgcatttaga ggggtgcagg ccaggaaaaa
     5161 gtttattcac atcctcacgt ctgttataag gattcaatca tattacaggg cttatgtttc
     5221 cagaaaaaat tttctgaggc taaaaaatgc tgcagtgaag ttacaatcca ttgtcaagat
     5281 gaagcaaact cgtaaacaat atttacattt aagagcagct gcactaaaga gagaagaaca
     5341 catgcgggca tcttgcatca aactgcaagc ttttgtcaga gggtacctgg ttcgaaagca
     5401 agtgaggttg cagagaaaag ctgctgtttc actacagtct catttcagga tgagaaagat
     5461 gcgcctgtac tacctgaaaa tctataaagc aactgttgtc attcagagtt actatcgtgc
     5521 atacaaagcg caggtcaatc agaggaagaa cttcttgcaa gtcaaaagag cagttatctg
     5581 cttgcaggcc acttacagag gttataaggt acgccagcta atcaaacaac aatctacagc
     5641 tgctcttaaa attcaaactg cctttagagg ctacagtaag aggatgaaat atcaatcggt
     5701 gcttcagtct actctcaaga ttcagagatg gtacaggaca cacaagactg cttctgacat
     5761 aagaacacat tttttaaaga caagggcagc tgtgatttct ctacagtccg cttaccgtgg
     5821 ctggaaagtt cggaagcaga tcagaaggga acatcaagct gcagtgaaga ttcagtctgc
     5881 tttcagaatg gccaaggccc agaaagagtt cgggttgtta aaaacggcag catccgtcat
     5941 ccagcaacat ctgagagcgc gggctgcagg gaggagggaa cggttggagt acactgcgct
     6001 ccgccttgca gcagtgatgc tccagtccac gtggaggggc agagcagcga gaagacaggt
     6061 tcagaagcaa cacaaatgtg ctgtcctcat acagtcgtgc taccgaatgt acgtgcagcg
     6121 aaagaagtgg aaaatcatga aaaaagcggc ttgtctgatt caaatgtact atcgggctta
     6181 cagtactggg agaaaacagc atcatttgta tttggaaacc aaagcagcag tagtaatcct
     6241 acagtcagct taccgaggta tgagagtgcg gaaaaaaata aaggagcacc acaaggcggc
     6301 agccgctata caatctagtt acacagctta ccaaaccaaa aagaagtacg ccacctacag
     6361 agcgtcagct gttataattc agaggtggta tcgagatact aaaattgcag accgtcagcg
     6421 taaggaatat cttactttaa agaaggcggc tgtgaaaatc caagctgttt atagaggtgt
     6481 tacagtaaga agacagactc agcacctgca cgcagcggcc actcttattc aagccgtgtt
     6541 taaaatgcag caatcaagga ggcgatatca tcaaatgaga acagcagccg tcataattca
     6601 ggtaaggtac agagcgtatc atcagggtag aactcaacgt gcaaagtacc tgacaacttt
     6661 gaaagctgtt accattctcc aggccagttt cagaggagga cgagttagac agaccctgag
     6721 aaggatgcag accgcagcaa cactcatcca gtcccactac agaagacaca gacaacaagc
     6781 ttattttaat aagttgaaga aggtgacaag attggtgcag caaaagtacc gggcagtgag
     6841 ggaaaggaac atacaatttc aaaggtataa caaactgaga cattccgtaa tctgcattca
     6901 ggctgctttt agggggatgg aagctagaag acacttaaaa gtcatgcact cagccgcggc
     6961 tatgattcag aggagattta ggactctgat gatgagaagg agattcctgt ctctcaggaa
     7021 taccgctgtg tggattcaga gaaaatatcg tgcaaatgtt tgcgcaaagc atcgcttaca
     7081 acagttacta cggttacaaa aggcagccct caaaatccag tcctggtaca gagggtgggt
     7141 ggtgaggaag aaggtgcaag agatgcaccg ggctgctacc gttctccagg cggctttcag
     7201 aaggcaccgt gcacatgtga gataccaggc ctggaggcat gcctcgcggg tcatccagca
     7261 gcaataccgg gcaagcaggg ccaaaccgct gcagaggcag ctctacctcc agcaaagaca
     7321 ctctgctgtg gtcctccagg ctgcattcag gggtatgcaa gccagaagac atttgaaaag
     7381 gatgcatgcc tctgcaaccc tgattcagag caggtttaga tctttagtga tgaggaaaag
     7441 gttcctttcc ctcaagaaag cagctatttt tgttcagagg aaatatcgag ccaccatttg
     7501 tgccaaacat cacttgcacc aattcttgga gttacagaag gcagtcatta caatccagcc
     7561 atcttaccga aggctgatgg caaagaagaa gttacaggag atgcacaggg ccgcagccct
     7621 catccaggca actttcagaa tgcacagaac acaccttacc tttcagacct ggaaacacgc
     7681 ctcgattctc attcagcaac attaccgagc atacagagct gcaaaattgc aaagagagca
     7741 ttatgtccaa caaaggcatt ctgcagtggt cattcaggct gcctataagg ggatgaaagc
     7801 aagacagctt ttaagggaaa agcacagagc tgctgtcata atacaaagca catacagaat
     7861 gtacaggcag tattttttct accaaaagct tcagtgggct acaaaagtaa tacaagaaag
     7921 atatagagcc aataaaaaga aagctcttca gcacaatgca ctcaagaaag cagcaacctg
     7981 tgtccaagca gactttcagg atatgattat aaggagagag attcaggaaa agcggcatca
     8041 ggctgccatt actcttcaga agcattttag agcctttaaa acaaggaagc accatctcca
     8101 ctttagagca aaggcagttt ttgttcaaag aaggtacaga acactagttg cagtgcaaac
     8161 ccaggcagtc atttgtatac agtcttacta cagaggcttt aaggcacgaa ggggtatcca
     8221 actcatgcac ctggctgcca cccgaattca gtcattctac cgaatgtaca gggccagaat
     8281 ggattatcag gcaaagagaa tggcaattgt tgttatacag aattattaca ggtcatacgc
     8341 cagagtaaaa atggaaagaa aaaaatgttt agccattcag aaatctgtaa gacctattca
     8401 ggctgctttt agcggcatga aagttagaca gaaatttaaa aacatgcccg aagtaaaaat
     8461 ggcagtccct gctacccaat ctgcattctg ctgtcacaga actgaaactc agtatgaagc
     8521 tggccaaagc ccagcactta cggttcaaag gcagtgtaaa gcttctctgg ttggtccctt
     8581 acaggaagca gagtatcctt ctgaaagaaa ggctgcagtg acaattcaaa aagcttttcg
     8641 taaaatggtc acaagaagat tggaaaagca caagcgggct gccgtgcgaa ttcagtcctt
     8701 ccttcagatg gctgtgtatc gaagaagatt cattcagcag aaaagggcgg ctgtcacttt
     8761 gcagcggcat ttcaggaaaa ggcaaaccag aaaacagttt tcattgtatg gagaagcagc
     8821 agtcgtttta caaaatcacc acagagcctt tttgtctgca aaacgtcaaa gagaagttta
     8881 tttacaaata agaagcagtg ttatcgttat tcaagctaga atggaaggat ttatacagaa
     8941 acggaagttt cagaaaatta aagatagcac cataaaaatc cagactgcgt ggaggagaca
     9001 taaagccagg aaatatttac gtgaagtgaa agctgcctgc gagattcaag cctggtacag
     9061 gtgttggaaa gcacgtaaag actatctggc tgtgttaaga gctgttagaa tcattcaggg
     9121 ttgcttctgt accaaactgc agagaagacg gtttttgaac gtgagagcat caacaatcat
     9181 cattcagaga aaatggagag ctgtactttc tggaagaaca gctcacgagc aattcttaat
     9241 gacaaaagga tatcaagctg cttgtttgat ccaagcaaat ttcagaggat ataaaggaag
     9301 gcaggtcttt ctccagcaga aatcagctgc tttgaccata caaagataca tacgagccag
     9361 gaagactggg aagtgtgaaa ggataaaata tgttgaatta aaaaaatcta cagttgttct
     9421 acaagcactg gtgcgtggtt ggttagtaag aaaaaggatt ttagaacaga gagccaaaat
     9481 gaggcttctt cacttcacag cagctgcctt ttatcacctg tctgctctta gaattcaaag
     9541 agcgtacaga cttcacaggg ctctgaagaa tgctgatgat aaacaggtta actcagccat
     9601 ctgtattcag agatggtttc gagcaagatt acagcataag aggtttcttc agaaacatcg
     9661 cttcatgaaa attcagaatg aagctcaaga acgtatgagc cagcaaaata gggctgcatc
     9721 agtgatacag aaagccgtac gccgtttcct cctccgtaaa aagcaggaaa agcttaataa
     9781 tagagtcact aaaatccagg cgttatggag aggatattct tggaggaaga aaaatgattg
     9841 tacaaaaatt aaagccattc gacagagact tcagtgtgtt aaccgggaga ttcgagaaga
     9901 aaacaagctc taccacagaa ccgcacttgc cctgcactat ctcctgacat acaagtacct
     9961 ttccgctatt cttgaggctc taaagcacct ggaggtagtt actggactgt cttcactttg
    10021 ctgtgagaat atggcccaga gtggagcaat ttctaaaata ttcgtcttga tccgaagctg
    10081 taaccgtagt gtcccttgta tggaggtcat cggatacgct gtgcaggtct tgcttaacgt
    10141 tgccaagtat gagaaaacga cttcagcagt ttacgatgta gaaaactgtg tagatacact
    10201 gctggagctt ctgcaaatgt accaagaaaa gcccggtgac aaagttgcag acaagagtag
    10261 aagcattttc acaaaaactt gttgtttgtt agctgtttta ctgaagagga caaatcgagc
    10321 ttctgatgtt cgaagtaggt ccaaagttgt tgaccgtatt tatagtctct ataaacttac
    10381 agctcataaa cataaagtga atactgaaag aatcctttgt aaacaaaaga agaaatctat
    10441 gagcatttcc tttattccag aaacgcctgt aagaaccaga atggtttcaa gacttaaacc
    10501 ggattgggtt ttgagaagag ataacttgga agaaatcatg aatcctctga aagctattca
    10561 aatggtgatg gacacacttg gcattcctta ttagcaaagg caaacgtctc agtatgtaca
    10621 ggaaaagaaa taggaaagct gatcacatgt atggaaagtg cttttggctt gctttgtaca
    10681 acttttaaaa tctgactttg tgttaaagtt aaaaagaggt atgtaacaaa taaactttta
    10741 atattc
//
LOCUS       XM_032652716             618 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus polyadenylate-binding protein 2-like
            (LOC116764270), mRNA.
ACCESSION   XM_032652716
VERSION     XM_032652716.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..618
                     /gene="LOC116764270"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 79% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764270"
     CDS             1..408
                     /gene="LOC116764270"
                     /codon_start=1
                     /product="polyadenylate-binding protein 2-like"
                     /protein_id="XP_032508607.1"
                     /db_xref="GeneID:116764270"
                     /translation="MEEETEKLKELQNEVEKQVNMSLPADNAGPVIMSTEKMEADSCS
                     IYVGNVDYGATAEELEAHFHGCGSVNSVTILCDKFSGHPKGFAYIEFSDKESVRTSLA
                     LDESLFRGRQIKVIPKQTNRPGISTTDQGFPRA"
     misc_feature    130..357
                     /gene="LOC116764270"
                     /note="RNA recognition motif in type II
                     polyadenylate-binding protein 2 (PABP-2) and similar
                     proteins; Region: RRM_II_PABPN1; cd12550"
                     /db_xref="CDD:409966"
ORIGIN      
        1 atggaagaag aaactgagaa gctaaaggag ctacagaacg aggtagagaa gcaggtgaat
       61 atgagtctac ctgcagacaa cgctggccca gtgatcatgt ccactgagaa gatggaggct
      121 gattcctgtt ccatctatgt tggcaatgtg gactatggtg caacagcaga agagctggaa
      181 gcacactttc atggctgtgg ttcagtcaac tctgttacta tattatgtga caaatttagt
      241 ggccatccca aagggtttgc atatatagag ttctcagaca aagagtcagt gaggacttcc
      301 ttggccttag atgagtccct atttagagga agacaaatca aggtgatccc aaaacaaacc
      361 aacagaccag gcatcagcac aacagaccag ggtttcccac gagcctgata ccgtgcccgg
      421 accaccaact acagcagttc ccgctcttga ttctgcagtg gttttaacag caggccctgg
      481 ggtcatgtct acaggggccg ggctagagtg acatcatggt attcccctta ctataaaaaa
      541 gtgtgtatta ggaggagaga gaggaaaaaa gagaaaagaa gggaaaaaat agaattaaga
      601 ataaaaagaa aagcagaa
//
LOCUS       XM_032652729             309 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATP synthase subunit g,
            mitochondrial-like (LOC116764278), mRNA.
ACCESSION   XM_032652729
VERSION     XM_032652729.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..309
                     /gene="LOC116764278"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764278"
     CDS             1..303
                     /gene="LOC116764278"
                     /codon_start=1
                     /product="ATP synthase subunit g, mitochondrial-like"
                     /protein_id="XP_032508620.1"
                     /db_xref="GeneID:116764278"
                     /translation="MAQFARNLAEKSPALVSAAVTHSKPRLATFWHYAKVELVPPTPA
                     EIPTAIQILKKIINSAQTGSFKQLTVKEALLNGLVATEVWMWFYVGEIIDKRGIIG"
     misc_feature    28..300
                     /gene="LOC116764278"
                     /note="Mitochondrial ATP synthase g subunit; Region:
                     ATP-synt_G; pfam04718"
                     /db_xref="CDD:461408"
ORIGIN      
        1 atggcccagt ttgcccgtaa cctcgcggag aagtccccag cgctggtcag cgctgctgtg
       61 actcactcga agcctcgatt ggccacattt tggcactatg ccaaggttga gctggttcct
      121 ccaacccctg ctgagatccc tacagctatt cagatcttga aaaaaattat caatagtgct
      181 caaactggta gcttcaaaca gcttacagtt aaggaagctc tactgaatgg tttggtggcc
      241 actgaggtgt ggatgtggtt ttatgttggc gagatcatag acaagcgtgg catcattggc
      301 taaaatgtt
//
LOCUS       XM_032652743            3417 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus flavin containing dimethylaniline
            monoxygenase 4 (FMO4), mRNA.
ACCESSION   XM_032652743
VERSION     XM_032652743.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                VOSU01000011.1     128165688-128165772
            86-225              VOSU01000011.1     128169219-128169358
            226-414             VOSU01000011.1     128171546-128171734
            415-577             VOSU01000011.1     128172363-128172525
            578-720             VOSU01000011.1     128182754-128182896
            721-917             VOSU01000011.1     128183800-128183996
            918-1270            VOSU01000011.1     128185066-128185418
            1271-1340           VOSU01000011.1     128191195-128191264
            1341-1695           VOSU01000011.1     128197615-128197969
            1696-3417           VOSU01000011.1     128197971-128199692
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3417
                     /gene="FMO4"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 19 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116764283"
     CDS             34..1767
                     /gene="FMO4"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: dimethylaniline
                     monooxygenase [N-oxide-forming] 4"
                     /protein_id="XP_032508634.1"
                     /db_xref="GeneID:116764283"
                     /translation="MGKCFQKLLSQRMYTFLEHTMAKRVAVIGAGVSGLSSIKCCLDE
                     DLEPTCFERSNDIGGLWKFTETSKDGMTRVYKSLVTNVCKEMSCYSDFPFQEDYPNFM
                     KQEKFWDYLQEFAEHFDLLKYIRFRTTVCSVTKRPDFSETGQWDVVTETEGELDRAIF
                     DAVMVCTGHFLNPRLPLESFPGIHKFKGQILHSQEYKIPTGFQDKRVLVIGLGNTGGD
                     IAVELSRTAAQVLLSTRTGTWVISRSSNGGYPFNMMATRRHNFTAQVLPSCVLKWSQE
                     RGLNKRFDHTNYGLNITKGKKPKTIVNDELPTCILCGTVTMKTSVKEFTETSALFEDG
                     TVEENIDVVIFTTGYTFSFPFLEEPLKSLCTKKTFLYKLVFPSNLERTTLAMIGFISL
                     TGSILAGTELQARWATRVFKGLCKIPPSQKLMAEATKKEQLIERGLMKDTSGDKLDYI
                     SYMDELAACIGTKPNVPLLFLKDPRLAWEVFFGPCTPYQYRLMGPGKWDGARNAILTQ
                     WDRTLKPLKTRIVPDSSKPASMSHYLKAWGAPILLASLLLICKSSLFLKLVPEKLWDR
                     ISPYLISIWRG"
     misc_feature    97..1683
                     /gene="FMO4"
                     /note="Flavin-binding monooxygenase-like; Region:
                     FMO-like; pfam00743"
                     /db_xref="CDD:395602"
ORIGIN      
        1 gtaagtgtcc tggatttttt tttttttttt tttatgggga aatgtttcca gaagctgctt
       61 tcacagagga tgtatacttt ccttgaacac accatggcca agcgagttgc agtgattgga
      121 gctggtgtga gtggcctgtc ctccatcaaa tgctgcttgg atgaagacct ggagcctacc
      181 tgctttgaaa gaagtaatga catcggggga ctgtggaagt ttaccgaaac ttctaaagat
      241 gggatgacca gagtctacaa gtcattagtg acaaacgtct gcaaagaaat gtcatgttac
      301 agcgacttcc ccttccaaga agattatccc aattttatga agcaagaaaa attttgggac
      361 tacctccaag agtttgctga gcactttgac cttctgaaat acattcggtt tagaaccaca
      421 gtgtgcagcg taacaaagcg tcccgacttc tccgaaactg gtcagtggga tgttgtcaca
      481 gagacagagg gggagctgga cagagctatc tttgatgctg tcatggtttg cactggacac
      541 ttcctgaatc cccgtttacc tttggagtca tttcctggaa tccataagtt taaaggccag
      601 atcctgcaca gtcaagagta caagatccca acaggctttc aggacaaacg cgtcttagtg
      661 atcggtcttg ggaacactgg aggggacatt gcagtggagc tcagtcgaac cgcagctcag
      721 gttcttctca gtactagaac aggtacctgg gtcatcagcc gctcttcaaa tgggggctac
      781 ccatttaata tgatggctac aagacgccac aattttactg cacaagttct gccttcatgt
      841 gtactaaagt ggagtcaaga gaggggcttg aataaaagat ttgatcatac gaattatgga
      901 ctaaatatta ctaaggggaa aaaaccaaaa acaattgtga atgatgagct gccaacctgt
      961 atcctctgtg ggacagtcac tatgaaaacc agcgtgaagg agtttacaga aacctctgct
     1021 ctctttgaag acgggacagt ggaagaaaac atcgatgttg tgatcttcac tacaggatac
     1081 accttttctt ttccctttct ggaagaacct ctcaaaagcc tttgtacaaa gaagacattc
     1141 ctgtataagc tggtctttcc ctcaaaccta gagaggacaa cactggctat gattggcttc
     1201 atcagcctta caggatccat cttagcaggc acagagctcc aagcacgatg ggccacaaga
     1261 gtattcaaag gactctgtaa gatacctcca tctcaaaaat tgatggctga ggctacgaaa
     1321 aaggagcagc tcatagaaag gggtttgatg aaagatacca gtggagacaa acttgactac
     1381 atttcctaca tggatgaact cgctgcctgc ataggcacga agcccaatgt cccacttctg
     1441 ttcctcaagg atcccagact agcttgggaa gttttctttg gaccatgtac tccttaccag
     1501 tatcgcctaa tgggccctgg aaaatgggat ggagccagaa atgccatcct cacccagtgg
     1561 gacaggacac tgaaaccctt aaaaactcga atagttcccg attcctccaa gcctgcctcc
     1621 atgtcacatt atttgaaagc ttggggggca cctatcctgc tcgcctccct tctactgatc
     1681 tgtaaatctt cacttttttt gaaattggtg ccagaaaaac tatgggacag aatttctcct
     1741 tacttaataa gtatttggcg aggataaatc tgcttgatta tgagggttgt accaagtcat
     1801 attaattcta ttcccaaata tcttgtgttt ttcacttctc catcataact gttatcatcc
     1861 aaggttaggt ctaatcatct cttatctgaa ttattgtact atcttcctct ctagtctcag
     1921 tatccccttt ttttttgcct cctttaccta agcaattatt ctaaaataaa aaatattgtc
     1981 attgtttcta tcaagatcct ggccggaata agatagaact caaattaggt aatttaatat
     2041 aaagattatg tcaagtggtt tgggcagagt gtagggaaat cataagtaga atgaaattct
     2101 gccagactag taacaatgag gtgcttctac catctgtagg cctaatgagg aaaggggaga
     2161 aaacaattac gaatgagaga gagggagaga gagagagaga ttatgtacag agggccacct
     2221 ctcaagaact atgacctcca gctgaccaat gaaggcagtc catggtgacc ccaaaagtac
     2281 tagggaaatt aattgccgaa tcttaggctc ttccatccca ctgcccgtgc tccccagtgg
     2341 cctaacccaa ccaaaattta gagggcaagg ttactgacta ttgtggattt aattgcaccc
     2401 ccccacacac cagaagatat attcacgtcg taacccctgg tacctgtgaa cgtgacctta
     2461 cttggaagta ggatctttgc aaatgtatat aagttaagat gagatcatac tgaagtaggg
     2521 tgagctaaat ccaatataaa aagagaatcc ttataaaaag aggataagac acacagagac
     2581 acagtcacag tggagaatgc cacgtgaaga caggcagaga ttggagtgat gcatctaagg
     2641 atcgccaagc aagcaaacac tggaaggtaa gagagaggca cagatcagat tctccctcaa
     2701 aagctccaga gggagcaacc ctgccaacaa ttccggactc ctagcctcca gaactgtgaa
     2761 agaataagcc acccactctg tggtactttg ctatggcaat cctaggttac caatacaccc
     2821 actgatgtgt taggaggtga gcctcctaag ccacagagca aagcaaagat gatggggagt
     2881 gtataggaaa gggcaaccag aaaggatcca gagcagacat gttgctttcc aatgtaaaaa
     2941 tccttcaaag tttgtccctt gattagagat tataaattcc ttagcctgga agaggagact
     3001 cttcatgacc tgagaccctt tgcctaggtc accagaatcc tgtcctgcag ctacccctcc
     3061 acttcaaacc ctgccatcta gtactaccag actacggact gtgctgtacc tcctcacttt
     3121 ggcacaagct gttgcctctt ccaacccctc gaatccatac ctgactgtct ttctagagag
     3181 agcttgatct tcgccctctg tgaagccttc cctgattccc caaagcagag ttgactgccc
     3241 cttcgtaatg attgtgcctc atgtactact ctgtcgttgt tctgttctta ctatagtata
     3301 attttctttt tgtgtctgtc tcctaatgaa tggtgagttc ttgagaggaa ccatgttcag
     3361 ctaaaacact gcctgataaa aagactgcaa aataaatatt tgatgactga acagtga
//
LOCUS       XM_032652756            1821 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 183A (TMEM183A),
            transcript variant X1, mRNA.
ACCESSION   XM_032652756
VERSION     XM_032652756.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1821
                     /gene="TMEM183A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 mRNAs, 3 long SRA reads, 6
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764288"
     CDS             115..1245
                     /gene="TMEM183A"
                     /codon_start=1
                     /product="transmembrane protein 183A isoform X1"
                     /protein_id="XP_032508647.1"
                     /db_xref="GeneID:116764288"
                     /translation="MARGPGPLTRPRPDTVAMPKRGKRLKFRAQDACSGRVTVADYAN
                     SDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAVEAFSGAGEPCDIIDSSDEIDA
                     QEESIHERTASRKKKSKRHKEDLDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNA
                     WTVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARI
                     SKNPAIPESTPSTLKNSKCLLFWCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCMGGLQ
                     PPIQYEDVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQ
                     DSPVHGGRKLRSEQGVQVILDPVHSIRLFDWWHPQYPFSLRA"
ORIGIN      
        1 gcgacgcgga gccctgtcca aagcctcgcg agagctgcgg tcctggagcg gaatggctgc
       61 ggagccgggc agagctggcc tttggctcct gcttcccgct ctctggcctg aaacatggcc
      121 cggggtcctg gcccgctaac ccggcctcgc cccgacacag tcgccatgcc caagagagga
      181 aagcgactca agttccgggc ccaagacgcc tgctctgggc gagtgactgt ggcggattat
      241 gccaactcgg atccggccgt cgtgaggtct ggaagggtca agaaagccgt cgccaatgct
      301 gttcagcagg aagtcaaatc tctttgtggc ttggaagcct cccaggttcc tgcagtagaa
      361 gctttctctg gggctggtga gccctgtgac atcattgaca gcagtgatga gattgatgcc
      421 caggaggaaa gcatccatga aagaactgcc tccagaaaaa agaaaagcaa gaggcacaaa
      481 gaagatctgg atggggctgg aggagaagag tatcccatgg atatttggct cttactggcc
      541 tcctatatcc gtcctgagga cattgtgaat ttttccctga tttgtaagaa tgcctggact
      601 gtcacttgca ctgctgcctt ttggaccagg ttgtaccgaa ggcactacac gctggatgcc
      661 tctctgcctt tgcgcctgcg accagagtca atggagaagc tgcgctgtct ccgggcatgt
      721 gtgatccgat ctctgtacca tatgtatgag ccatttgctg ctcgaatctc caagaatcca
      781 gccattccag aaagcactcc tagcacatta aagaattcca aatgcttact tttctggtgc
      841 agaaagattg ttgggaacag acaggagcca atgtgggaat tcaacttcaa gttcaaaaag
      901 cagtccccta gattaaagag caagtgtatg ggaggattgc agcctcccat tcagtatgaa
      961 gatgttcata ccaacccaga ccaggactgc tgcctactgc aggtcaccac cctcaatttc
     1021 atctttattc caattgtcat gggaatgata tttaccctgt ttactatcaa tgtgagcacg
     1081 gacatgcggc atcatcgagt gagactggtg ttccaagatt ctcctgtcca tggaggtcgg
     1141 aaactgcgca gtgaacaggg tgtgcaagtc atcctggacc cagtgcacag cattcgactt
     1201 tttgactggt ggcatcctca gtatccattc tccctgaggg catagatact gcttcccgtc
     1261 actgagggca gccctgagct aggccagtcc atttgtaatc agattccagt ttggaagggg
     1321 cagctgattg tatatctggt cagtaatgca catgctcttc aggtttctgg ggctccttct
     1381 aggggaagga gaaggattga atcaggagta aaaacattat gatttataaa catattttaa
     1441 tgtaaaattt tgcatttgaa aggtgaaacc tggccctatt ttctgtgtta aaccccattt
     1501 ggtgctactg agtttgttct ttattctttt atcccagcca gagtggatga tctcgcttta
     1561 ggggaaaatt aaactcttaa atctccaaac aaggaaattt cagcattccc ttatggatca
     1621 gagtaacctt agaggcttaa aattgttgct actgttgctt ccaatttagc tgcccctcaa
     1681 attcaagtga atatttcctc ttctcccttt acccctctct agaaataaag caggtgacag
     1741 ggttttcata aacttatgag attgacttgt gtatctttct ttaaaaatat ttgtcacata
     1801 aatatttttc tgccagtttt g
//
LOCUS       XM_032652766            1720 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 183A (TMEM183A),
            transcript variant X2, mRNA.
ACCESSION   XM_032652766
VERSION     XM_032652766.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1720
                     /gene="TMEM183A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764288"
     CDS             82..1209
                     /gene="TMEM183A"
                     /codon_start=1
                     /product="transmembrane protein 183A isoform X2"
                     /protein_id="XP_032508657.1"
                     /db_xref="GeneID:116764288"
                     /translation="MARGPGPLTRPRPDTVAMPKRGKRLKFRAQDACSGRVTVADYAN
                     SDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAVEAFSGAGEPCDIIDSSDEIDA
                     QEESIHERTASRKKKSKRHKDLDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAW
                     TVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARIS
                     KNPAIPESTPSTLKNSKCLLFWCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCMGGLQP
                     PIQYEDVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQD
                     SPVHGGRKLRSEQGVQVILDPVHSIRLFDWWHPQYPFSLRA"
ORIGIN      
        1 gctgcggtcc tggagcggaa tggctgcgga gccgggcaga gctggccttt ggctcctgct
       61 tcccgctctc tggcctgaaa catggcccgg ggtcctggcc cgctaacccg gcctcgcccc
      121 gacacagtcg ccatgcccaa gagaggaaag cgactcaagt tccgggccca agacgcctgc
      181 tctgggcgag tgactgtggc ggattatgcc aactcggatc cggccgtcgt gaggtctgga
      241 agggtcaaga aagccgtcgc caatgctgtt cagcaggaag tcaaatctct ttgtggcttg
      301 gaagcctccc aggttcctgc agtagaagct ttctctgggg ctggtgagcc ctgtgacatc
      361 attgacagca gtgatgagat tgatgcccag gaggaaagca tccatgaaag aactgcctcc
      421 agaaaaaaga aaagcaagag gcacaaagat ctggatgggg ctggaggaga agagtatccc
      481 atggatattt ggctcttact ggcctcctat atccgtcctg aggacattgt gaatttttcc
      541 ctgatttgta agaatgcctg gactgtcact tgcactgctg ccttttggac caggttgtac
      601 cgaaggcact acacgctgga tgcctctctg cctttgcgcc tgcgaccaga gtcaatggag
      661 aagctgcgct gtctccgggc atgtgtgatc cgatctctgt accatatgta tgagccattt
      721 gctgctcgaa tctccaagaa tccagccatt ccagaaagca ctcctagcac attaaagaat
      781 tccaaatgct tacttttctg gtgcagaaag attgttggga acagacagga gccaatgtgg
      841 gaattcaact tcaagttcaa aaagcagtcc cctagattaa agagcaagtg tatgggagga
      901 ttgcagcctc ccattcagta tgaagatgtt cataccaacc cagaccagga ctgctgccta
      961 ctgcaggtca ccaccctcaa tttcatcttt attccaattg tcatgggaat gatatttacc
     1021 ctgtttacta tcaatgtgag cacggacatg cggcatcatc gagtgagact ggtgttccaa
     1081 gattctcctg tccatggagg tcggaaactg cgcagtgaac agggtgtgca agtcatcctg
     1141 gacccagtgc acagcattcg actttttgac tggtggcatc ctcagtatcc attctccctg
     1201 agggcataga tactgcttcc cgtcactgag ggcagccctg agctaggcca gtccatttgt
     1261 aatcagattc cagtttggaa ggggcagctg attgtatatc tggtcagtaa tgcacatgct
     1321 cttcaggttt ctggggctcc ttctagggga aggagaagga ttgaatcagg agtaaaaaca
     1381 ttatgattta taaacatatt ttaatgtaaa attttgcatt tgaaaggtga aacctggccc
     1441 tattttctgt gttaaacccc atttggtgct actgagtttg ttctttattc ttttatccca
     1501 gccagagtgg atgatctcgc tttaggggaa aattaaactc ttaaatctcc aaacaaggaa
     1561 atttcagcat tcccttatgg atcagagtaa ccttagaggc ttaaaattgt tgctactgtt
     1621 gcttccaatt tagctgcccc tcaaattcaa gtgaatattt cctcttctcc ctttacccct
     1681 ctctagaaat aaagcaggtg acagggtttt cataaactta
//
LOCUS       XM_032652775             987 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 183A (TMEM183A),
            transcript variant X3, mRNA.
ACCESSION   XM_032652775
VERSION     XM_032652775.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..987
                     /gene="TMEM183A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764288"
     CDS             82..858
                     /gene="TMEM183A"
                     /codon_start=1
                     /product="transmembrane protein 183A isoform X3"
                     /protein_id="XP_032508666.1"
                     /db_xref="GeneID:116764288"
                     /translation="MARGPGPLTRPRPDTVAMPKRGKRLKFRAQDACSGRVTVADYAN
                     SDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAVEAFSGAGEPCDIIDSSDEIDA
                     QEESIHERTASRKKKSKRHKEDLDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNA
                     WTVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARI
                     SKNPAIPESTPSTLKNSKKDCWEQTGANVGIQLQVQKAVP"
ORIGIN      
        1 gctgcggtcc tggagcggaa tggctgcgga gccgggcaga gctggccttt ggctcctgct
       61 tcccgctctc tggcctgaaa catggcccgg ggtcctggcc cgctaacccg gcctcgcccc
      121 gacacagtcg ccatgcccaa gagaggaaag cgactcaagt tccgggccca agacgcctgc
      181 tctgggcgag tgactgtggc ggattatgcc aactcggatc cggccgtcgt gaggtctgga
      241 agggtcaaga aagccgtcgc caatgctgtt cagcaggaag tcaaatctct ttgtggcttg
      301 gaagcctccc aggttcctgc agtagaagct ttctctgggg ctggtgagcc ctgtgacatc
      361 attgacagca gtgatgagat tgatgcccag gaggaaagca tccatgaaag aactgcctcc
      421 agaaaaaaga aaagcaagag gcacaaagaa gatctggatg gggctggagg agaagagtat
      481 cccatggata tttggctctt actggcctcc tatatccgtc ctgaggacat tgtgaatttt
      541 tccctgattt gtaagaatgc ctggactgtc acttgcactg ctgccttttg gaccaggttg
      601 taccgaaggc actacacgct ggatgcctct ctgcctttgc gcctgcgacc agagtcaatg
      661 gagaagctgc gctgtctccg ggcatgtgtg atccgatctc tgtaccatat gtatgagcca
      721 tttgctgctc gaatctccaa gaatccagcc attccagaaa gcactcctag cacattaaag
      781 aattccaaaa aagattgttg ggaacagaca ggagccaatg tgggaattca acttcaagtt
      841 caaaaagcag tcccctagat taaagagcaa gtgtatggga ggattgcagc ctcccattca
      901 gtatgaagat gttcatacca acccagacca ggactgctgc ctactgcagg tcaccaccct
      961 caatttcatc tttattccaa ttgtcat
//
LOCUS       XM_032652816            1118 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus carbonic anhydrase 6 (CA6), mRNA.
ACCESSION   XM_032652816
VERSION     XM_032652816.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1118
                     /gene="CA6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 Proteins, and 49%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764305"
     CDS             156..1109
                     /gene="CA6"
                     /codon_start=1
                     /product="carbonic anhydrase 6"
                     /protein_id="XP_032508707.1"
                     /db_xref="GeneID:116764305"
                     /translation="MTALVTLLSLLLLGPQAQQGAEWTYSGGVLDEAHWPREYPDCRG
                     KRQSPIDLQRKKVWYNPSLRALNLSGYEVQHGAFLMINNGHTVQISLPPTMCMTAADG
                     TQYITQQMHFHWGGASLEISGSEHTIDGIRYVIEIHIVHYNSKYKSYDKAQKARDGLA
                     VLAALVEVKDNAENTYYSNFISHLKSVRYPGQNTVLRGLDVQDMLPGNLHYYYSYWGS
                     LTTPPCTENVHWFVLADTVKLSRAQVWKLEHSLLNHQNKTFHNDYRGTQTLNNRVVEA
                     NFMSQLNQCSELQFYLNNIDSNLEYLRRFIEQKKAKRKRQG"
     misc_feature    246..989
                     /gene="CA6"
                     /note="Carbonic anhydrase alpha (vertebrate-like) group.
                     Carbonic anhydrases (CAs) are zinc-containing enzymes that
                     catalyze the reversible hydration of carbon dioxide in a
                     two-step mechanism: a nucleophilic attack of a zinc-bound
                     hydroxide ion on carbon...; Region: alpha_CA; cl00012"
                     /db_xref="CDD:469577"
     misc_feature    order(408..410,480..482,486..488,492..494,528..530,
                     567..569,813..815)
                     /gene="CA6"
                     /note="active site"
                     /db_xref="CDD:238200"
     misc_feature    order(486..488,492..494,567..569)
                     /gene="CA6"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:238200"
ORIGIN      
        1 tgcagagggc ccggtgagaa ggccgtgctg tttttcagtg ggcgcagcaa agggtggatc
       61 agctgaccag actcggtaaa ttgttattta cagtttctga acttttaaaa gaagagcttc
      121 cccagaatcg gccctgattc cagacccaca gcgtcatgac ggctctggtc accctgctgt
      181 ccctgctcct gctgggaccc caggcccagc aaggggccga gtggacctac tcaggtgggg
      241 tgctggatga agcacactgg ccgagggagt accccgactg cagggggaag agacagtcgc
      301 ccatcgacct gcagaggaag aaagtgtggt acaacccttc cctgagggct ctgaacctgt
      361 caggctacga ggtccagcac ggggcgttcc ttatgatcaa caatggccac acagtacaga
      421 tcagcctgcc ccccacaatg tgcatgacgg ctgccgacgg cacccagtac ataacccagc
      481 agatgcactt ccactggggt ggcgcctcct tggagatcag cggttccgag cacaccattg
      541 atgggatcag atatgtgatc gagattcaca ttgttcatta caattctaaa tacaagagct
      601 acgataaggc tcagaaagca cgggacggtt tggctgtgct ggcagccctc gttgaggtca
      661 aggataatgc tgaaaatact tactacagca acttcatttc tcacctgaag agcgtcaggt
      721 atccaggaca gaacacagtt ctgaggggcc ttgatgttca ggacatgcta cctgggaacc
      781 tccactacta ctacagctac tgggggtcac tcaccactcc tccctgtact gagaatgtcc
      841 actggtttgt gctggcggat accgtcaagc tctccagggc acaggtttgg aagctggagc
      901 attccttatt gaatcaccag aacaagacct tccacaatga ttaccgtggg acccagaccc
      961 tgaacaacag agtggtagaa gccaacttca tgtctcaact taatcagtgc tctgagctcc
     1021 agttttatct aaacaatatt gacagtaacc tcgagtactt gagaaggttt attgaacaga
     1081 agaaagcaaa gagaaaaaga caagggtaat gaccttga
//
LOCUS       XM_032652831            5453 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leptin receptor overlapping transcript
            (LEPROT), transcript variant X1, mRNA.
ACCESSION   XM_032652831
VERSION     XM_032652831.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5453
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5453
                     /gene="LEPROT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764306"
     CDS             16..501
                     /gene="LEPROT"
                     /codon_start=1
                     /product="leptin receptor gene-related protein isoform X1"
                     /protein_id="XP_032508722.1"
                     /db_xref="GeneID:116764306"
                     /translation="MAGVKGTSEVLGSLVLPWDRRLGSGMRLELRLQRVALVALSFSG
                     AIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPYFIAKRATYDSDATSSACRELAYF
                     FTTGIVVSAFGFPVILARVAVIKWGACGLVLAGNAVIFLTIQGFFLVFGRGDDFSWEQ
                     W"
     misc_feature    124..477
                     /gene="LEPROT"
                     /note="Vacuolar protein sorting 55; Region: Vps55;
                     pfam04133"
                     /db_xref="CDD:461188"
ORIGIN      
        1 cccagctcgg gagacatggc gggcgttaaa ggtacatccg aggtcctcgg ctcgctggtc
       61 ctgccgtggg atcgccgcct cggctctggg atgaggctgg agctgcgcct tcagcgcgtg
      121 gctcttgtgg cattatcctt cagtggggct attgggctga cttttcttat gctgggatgt
      181 gccttagagg attatggtgt ttactggccc ttgtttgtcc tgatattcca tgccatctct
      241 cccatcccct atttcattgc caaacgagca acgtatgact ccgatgcaac aagtagtgcc
      301 tgtcgggaac tggcttattt tttcactacc ggaattgttg tttctgcctt tggatttcct
      361 gttattcttg ctcgtgtggc cgtgatcaag tggggagcct gtggcctggt gctggcaggc
      421 aatgcagtga ttttccttac aattcaaggt tttttccttg tatttggaag aggagacgat
      481 tttagctggg agcagtggta gcacgcgctt tattctgatt aaatgcattt aatttcctag
      541 aattcatact gtttgtatat gtgtgcacat gtggcctttt actatgaaat ttaatatact
      601 gtttctttat acctttgtaa tcatgttcac tttaaggagg actacatggg gaaaaggtta
      661 gttttattcc cagccagtag acctctccat ttactcaagt tgaattatgt tatttgttta
      721 gcttttcata gagtcatggt gctctcagaa aatatgttaa ctcagtcttg tagacagttg
      781 ctcactcagt gtgctgcatc tccacctttg gcccggggat gtgcttgagt gggcacatag
      841 cactggggct gtctcagctc tgcccaggac ttccaagata tacctgtggc ccagagacac
      901 agaggcggct ccctctttat gttgcagact cttgcttctc caagtgtggt ccgtagacca
      961 agagcatcag catctcgaag cgtggtccat aggagcttat tacaaatgca gcgtctgggg
     1021 ccccatcctc aacctaatac attttgatga gaccccaagt gaatcgcagg cacattaaag
     1081 tctgagaagc gctgtcatga aggaagaagc attgccttcc ccttggctca accccttagc
     1141 ctctctgggc gttagctgct tgtaaaaact gtttcccctg cccttcgtgt tgaggcctac
     1201 ttcagactgt ccttggaatg tatgaaatgt ccaaagctat actttatagg ctgttcctca
     1261 catttgtgaa gtgttctcag tagggaacag ctatggcttc acattgtctg aaaggcagtg
     1321 gctgtcttca cagtgctggg gggacagatc cctcactggg aggcagggga gggaggctgg
     1381 gctggaaccg gcccctgctt tagcaagatg gggaagaatg gataagtaac gctgtttaat
     1441 ttcccttcat aatctgacat ttctccccag ttccttccct gtgctgctgc ccacccacct
     1501 tcaccagccc cgccaaacac acacactccc agcagttccg atttgcccta tcttcttcat
     1561 ggctcggctt ctccttccta tagagacgtg gagccaagta agcaagcaga gggtgagctg
     1621 cttaatttta tttacatgtg atgtacttgt ctttcatgtc ctgtaggact tttaaaatat
     1681 atatatatgt atatatatat atatatatat atatatatat atatatataa aacactttat
     1741 gccactttta aatgaatcat tgagaattca tgtcatgctg ggtcctgtaa tcacaggttt
     1801 tctagctcaa ctttttgtcc aaggcctatc gagaaaggga aatatgggaa ctagaaccac
     1861 gtgattagaa tgtaagcagt gattttaaag cattgttaat gtgtgataac agacatacat
     1921 tcaaaacact gaaaccttga agtttgtaac cccttcatat tctggaatga tcctgggagc
     1981 aggagaagac aagagtgata cctaaaagga taatatgcaa agtgatattt cagccttatg
     2041 catgatttta tgttttcagt gtactatgta cgtatagaac tgttaaagtt atttccaata
     2101 tttatattag aaaaattata tagacacttt ataattttaa ccagcatttt taataacaca
     2161 cttactgtat tgtaataaat tttactttta acagaaaaga aaagcttaat tttaaaagtt
     2221 tttattctga tgtcaccttg cttaaaaggt aacaaaaata tgaaaatttc tttgtgttct
     2281 gaaatgtgca gttgtgagca ataatctgtc ctgcattaga ataatagcag gaagttgtaa
     2341 gataccattt tcgatgtgga gttggcttgt aatagcttct cttttcctaa gatggagata
     2401 ctgtttaatt tatactatct tttgcaaaag tgcccttgtt gcttatacac attttaaata
     2461 accaaggtag ccttaatgtg tagccctaaa gcattgcctc ttgattgtat ttctagaacg
     2521 atataaagca cttgcatata gaatatttgt agttattccc tactaatgga atggtttatc
     2581 gaagtgatag attattggat ttgccatatg tatgaaacag agacatttat tctgcagcac
     2641 ctagtatcat ttaagtaata aatgtcagta gggagtattg ctgtatgtga atgtacggta
     2701 caaaagtttc atctctgtaa cacaaatgtt gggctttttt tgtgtgtgtg tggtacgcgg
     2761 gcctctctct gttgtggcct ctcccgttgc ggagcacagg ctccagacgc gcaggctcag
     2821 cggccatggc tcatgggccc agccgctccg cggatgtggg atcttcccgg accggcgcac
     2881 gaacccgcgt cctctgcatc gtcaggcgga ctctcaacca ctgcgccacc agggaagccc
     2941 aatgttgggc attttttaat tccttataaa aggttcattt gttttctata caccatagaa
     3001 tatattttgg agattcaaag cacgttgatt acattctaaa actgagaatg cacataaaga
     3061 gttgcccaga agtaagtaat cttatgaaga gattctctat catgttccaa acaactggct
     3121 tatactttga aacacttttc ccacagaaac aatatcatgc taccatgggt tacgaggcca
     3181 agccttctga ggaaggctaa accctcacat agctgtcctt taatactcaa ggaacctgcc
     3241 tgagttttgg atcttggcaa cagggtcgtg tcaacagttt gaacgatgga aaatgtaaat
     3301 ttccacctcc cttcctaaga acaaggtctt tcttgcttca atttttgcag ccctctctat
     3361 cccctaatgc ccttggggtc cattaaacct gtgatgtttg ctggcctcct ctcctgactc
     3421 ggaggcttcc tcttagtctg ccccacctcc cggggttctt catattccca aatcacccgc
     3481 ctttctactg ctaccaatca gttttcttag tagagctgat atcttgtgat gtttaaagag
     3541 aaagcagtcg gttcatactc tttcccagaa agaatgactg tgatcatctt ccccacatct
     3601 ggaacgcatc cataccagcc tcgtgcagtt accacgcagg gctgcagctg catttttttt
     3661 tttttttttt tttttgcggt gcacgggcct ctcactgctg cggagcacag gctccggacg
     3721 tgcaggctca gcggccatgg ctcacgggcc cagccgctcc gcggcatgtg ggatcttccc
     3781 ggaccggggc acgaacccgc gtcgcctgca tcggcaggca gactctcaac cactgcgcca
     3841 ccagggaagc cctgcagctg cctttttaca agggcatgcc ttggaaccca tttgcagaaa
     3901 tggcaatgtt ccacagtaaa gtgaaaaaag cattccagca gtttatagaa ggacagtaat
     3961 attttcggcc aggagcaagc aagcctatca cacttcatcc gttcctcacg gtgagttctc
     4021 agctggtcct acatttcata gttgtttctt ttcctccact tatgaaccca cagagttttc
     4081 ttacagtcct caggaagtct ttacctctga ggtatcttct tggtgaagac tcttctaggg
     4141 agtgaaatgt ttcatgaagt taatagcatt ccttaggctc tcagagaaat gcttaggaga
     4201 tgtcacaaaa atgtgccttt tcgaagtttg caaaattcag gttttgcacc ataatttaac
     4261 caaaatattt atgaagatgc tagcattttc caagtatagt aattagttca caactgggaa
     4321 atattattcc tgtagatgaa tataagttct gcatttaaat gtcctttatg ccattctgcc
     4381 tcatgaagta ccttatatgc aaaaatctca gtgtataata actcatgagt tacaatctgc
     4441 tttcatgtgg ccatgttcct ggagtagagc agtgacatgt gaccccaaac actgtgcaag
     4501 gtccccaaga ttgctttaga atgcaattat gtacatatga tggggatgat tttctttctt
     4561 tctttttttt tttcttcctc cagctaggcc accagagggt gatttccttt aaaatcaagc
     4621 ttgtcattta tacttgaaca aagactttta tgtacattat taaactaaaa cttctatatt
     4681 ttactttggg atgcattata tttggaaagg agaccagcag atttctttcc ccggtgtttt
     4741 tgtttggata atcttaatta aacttggaga atttgtctag ttttgagccc atatttattg
     4801 cggttgatag aagtagtcca agaatgtgtg taaccgggag gaatcgagtc cctagttaca
     4861 gctttgctaa catcccaagg ttgaaggtgg ttgtgtggga catggttaat caagaatttg
     4921 ctgttttgga aaagagaaaa agtccacact tttaaaaagt gctgtacata ttctgaagag
     4981 tcattttgta cactacagtg aagaatgcac acaggtaaag tactgcttaa ggagtaacgt
     5041 gtccccctta tacacagagc atttggggaa gatctgatgt ttcacaggtg gattgaggca
     5101 gttagttaga ttataaagaa actgagctag atatttcgtt gtattgccca actaagtgta
     5161 aagttaaatt cttagtagaa atttggttat accaacatca ctgtaaaatg cccataagaa
     5221 aaaatagttc ccaaggaagc ttctgtggtc caagggcttg tatataagaa ttttcgttta
     5281 gaaaaagcac actggatgca ttgagagacc ttgtcggggg ctgagaatgg atgtgtctgg
     5341 agaaatcatg tacctgttat ttaaacatag catcttctgt cttgagattt ttttaaaaaa
     5401 tacttgcctg tctttttggt cagctaaatg taaataaaaa gtattatctg tta
//
LOCUS       XM_032652838            5417 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leptin receptor overlapping transcript
            (LEPROT), transcript variant X2, mRNA.
ACCESSION   XM_032652838
VERSION     XM_032652838.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5417
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5417
                     /gene="LEPROT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 12
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764306"
     CDS             70..465
                     /gene="LEPROT"
                     /codon_start=1
                     /product="leptin receptor gene-related protein isoform X2"
                     /protein_id="XP_032508729.1"
                     /db_xref="GeneID:116764306"
                     /translation="MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAI
                     SPIPYFIAKRATYDSDATSSACRELAYFFTTGIVVSAFGFPVILARVAVIKWGACGLV
                     LAGNAVIFLTIQGFFLVFGRGDDFSWEQW"
     misc_feature    88..441
                     /gene="LEPROT"
                     /note="Vacuolar protein sorting 55; Region: Vps55;
                     pfam04133"
                     /db_xref="CDD:461188"
ORIGIN      
        1 accgggcctg ggcgggggca ggggccgtgg caagaagccg gaagcagccg cggccccagc
       61 tcgggagaca tggcgggcgt taaagctctt gtggcattat ccttcagtgg ggctattggg
      121 ctgacttttc ttatgctggg atgtgcctta gaggattatg gtgtttactg gcccttgttt
      181 gtcctgatat tccatgccat ctctcccatc ccctatttca ttgccaaacg agcaacgtat
      241 gactccgatg caacaagtag tgcctgtcgg gaactggctt attttttcac taccggaatt
      301 gttgtttctg cctttggatt tcctgttatt cttgctcgtg tggccgtgat caagtgggga
      361 gcctgtggcc tggtgctggc aggcaatgca gtgattttcc ttacaattca aggttttttc
      421 cttgtatttg gaagaggaga cgattttagc tgggagcagt ggtagcacgc gctttattct
      481 gattaaatgc atttaatttc ctagaattca tactgtttgt atatgtgtgc acatgtggcc
      541 ttttactatg aaatttaata tactgtttct ttataccttt gtaatcatgt tcactttaag
      601 gaggactaca tggggaaaag gttagtttta ttcccagcca gtagacctct ccatttactc
      661 aagttgaatt atgttatttg tttagctttt catagagtca tggtgctctc agaaaatatg
      721 ttaactcagt cttgtagaca gttgctcact cagtgtgctg catctccacc tttggcccgg
      781 ggatgtgctt gagtgggcac atagcactgg ggctgtctca gctctgccca ggacttccaa
      841 gatatacctg tggcccagag acacagaggc ggctccctct ttatgttgca gactcttgct
      901 tctccaagtg tggtccgtag accaagagca tcagcatctc gaagcgtggt ccataggagc
      961 ttattacaaa tgcagcgtct ggggccccat cctcaaccta atacattttg atgagacccc
     1021 aagtgaatcg caggcacatt aaagtctgag aagcgctgtc atgaaggaag aagcattgcc
     1081 ttccccttgg ctcaacccct tagcctctct gggcgttagc tgcttgtaaa aactgtttcc
     1141 cctgcccttc gtgttgaggc ctacttcaga ctgtccttgg aatgtatgaa atgtccaaag
     1201 ctatacttta taggctgttc ctcacatttg tgaagtgttc tcagtaggga acagctatgg
     1261 cttcacattg tctgaaaggc agtggctgtc ttcacagtgc tggggggaca gatccctcac
     1321 tgggaggcag gggagggagg ctgggctgga accggcccct gctttagcaa gatggggaag
     1381 aatggataag taacgctgtt taatttccct tcataatctg acatttctcc ccagttcctt
     1441 ccctgtgctg ctgcccaccc accttcacca gccccgccaa acacacacac tcccagcagt
     1501 tccgatttgc cctatcttct tcatggctcg gcttctcctt cctatagaga cgtggagcca
     1561 agtaagcaag cagagggtga gctgcttaat tttatttaca tgtgatgtac ttgtctttca
     1621 tgtcctgtag gacttttaaa atatatatat atgtatatat atatatatat atatatatat
     1681 atatatatat ataaaacact ttatgccact tttaaatgaa tcattgagaa ttcatgtcat
     1741 gctgggtcct gtaatcacag gttttctagc tcaacttttt gtccaaggcc tatcgagaaa
     1801 gggaaatatg ggaactagaa ccacgtgatt agaatgtaag cagtgatttt aaagcattgt
     1861 taatgtgtga taacagacat acattcaaaa cactgaaacc ttgaagtttg taaccccttc
     1921 atattctgga atgatcctgg gagcaggaga agacaagagt gatacctaaa aggataatat
     1981 gcaaagtgat atttcagcct tatgcatgat tttatgtttt cagtgtacta tgtacgtata
     2041 gaactgttaa agttatttcc aatatttata ttagaaaaat tatatagaca ctttataatt
     2101 ttaaccagca tttttaataa cacacttact gtattgtaat aaattttact tttaacagaa
     2161 aagaaaagct taattttaaa agtttttatt ctgatgtcac cttgcttaaa aggtaacaaa
     2221 aatatgaaaa tttctttgtg ttctgaaatg tgcagttgtg agcaataatc tgtcctgcat
     2281 tagaataata gcaggaagtt gtaagatacc attttcgatg tggagttggc ttgtaatagc
     2341 ttctcttttc ctaagatgga gatactgttt aatttatact atcttttgca aaagtgccct
     2401 tgttgcttat acacatttta aataaccaag gtagccttaa tgtgtagccc taaagcattg
     2461 cctcttgatt gtatttctag aacgatataa agcacttgca tatagaatat ttgtagttat
     2521 tccctactaa tggaatggtt tatcgaagtg atagattatt ggatttgcca tatgtatgaa
     2581 acagagacat ttattctgca gcacctagta tcatttaagt aataaatgtc agtagggagt
     2641 attgctgtat gtgaatgtac ggtacaaaag tttcatctct gtaacacaaa tgttgggctt
     2701 tttttgtgtg tgtgtggtac gcgggcctct ctctgttgtg gcctctcccg ttgcggagca
     2761 caggctccag acgcgcaggc tcagcggcca tggctcatgg gcccagccgc tccgcggatg
     2821 tgggatcttc ccggaccggc gcacgaaccc gcgtcctctg catcgtcagg cggactctca
     2881 accactgcgc caccagggaa gcccaatgtt gggcattttt taattcctta taaaaggttc
     2941 atttgttttc tatacaccat agaatatatt ttggagattc aaagcacgtt gattacattc
     3001 taaaactgag aatgcacata aagagttgcc cagaagtaag taatcttatg aagagattct
     3061 ctatcatgtt ccaaacaact ggcttatact ttgaaacact tttcccacag aaacaatatc
     3121 atgctaccat gggttacgag gccaagcctt ctgaggaagg ctaaaccctc acatagctgt
     3181 cctttaatac tcaaggaacc tgcctgagtt ttggatcttg gcaacagggt cgtgtcaaca
     3241 gtttgaacga tggaaaatgt aaatttccac ctcccttcct aagaacaagg tctttcttgc
     3301 ttcaattttt gcagccctct ctatccccta atgcccttgg ggtccattaa acctgtgatg
     3361 tttgctggcc tcctctcctg actcggaggc ttcctcttag tctgccccac ctcccggggt
     3421 tcttcatatt cccaaatcac ccgcctttct actgctacca atcagttttc ttagtagagc
     3481 tgatatcttg tgatgtttaa agagaaagca gtcggttcat actctttccc agaaagaatg
     3541 actgtgatca tcttccccac atctggaacg catccatacc agcctcgtgc agttaccacg
     3601 cagggctgca gctgcatttt tttttttttt tttttttttg cggtgcacgg gcctctcact
     3661 gctgcggagc acaggctccg gacgtgcagg ctcagcggcc atggctcacg ggcccagccg
     3721 ctccgcggca tgtgggatct tcccggaccg gggcacgaac ccgcgtcgcc tgcatcggca
     3781 ggcagactct caaccactgc gccaccaggg aagccctgca gctgcctttt tacaagggca
     3841 tgccttggaa cccatttgca gaaatggcaa tgttccacag taaagtgaaa aaagcattcc
     3901 agcagtttat agaaggacag taatattttc ggccaggagc aagcaagcct atcacacttc
     3961 atccgttcct cacggtgagt tctcagctgg tcctacattt catagttgtt tcttttcctc
     4021 cacttatgaa cccacagagt tttcttacag tcctcaggaa gtctttacct ctgaggtatc
     4081 ttcttggtga agactcttct agggagtgaa atgtttcatg aagttaatag cattccttag
     4141 gctctcagag aaatgcttag gagatgtcac aaaaatgtgc cttttcgaag tttgcaaaat
     4201 tcaggttttg caccataatt taaccaaaat atttatgaag atgctagcat tttccaagta
     4261 tagtaattag ttcacaactg ggaaatatta ttcctgtaga tgaatataag ttctgcattt
     4321 aaatgtcctt tatgccattc tgcctcatga agtaccttat atgcaaaaat ctcagtgtat
     4381 aataactcat gagttacaat ctgctttcat gtggccatgt tcctggagta gagcagtgac
     4441 atgtgacccc aaacactgtg caaggtcccc aagattgctt tagaatgcaa ttatgtacat
     4501 atgatgggga tgattttctt tctttctttt tttttttctt cctccagcta ggccaccaga
     4561 gggtgatttc ctttaaaatc aagcttgtca tttatacttg aacaaagact tttatgtaca
     4621 ttattaaact aaaacttcta tattttactt tgggatgcat tatatttgga aaggagacca
     4681 gcagatttct ttccccggtg tttttgtttg gataatctta attaaacttg gagaatttgt
     4741 ctagttttga gcccatattt attgcggttg atagaagtag tccaagaatg tgtgtaaccg
     4801 ggaggaatcg agtccctagt tacagctttg ctaacatccc aaggttgaag gtggttgtgt
     4861 gggacatggt taatcaagaa tttgctgttt tggaaaagag aaaaagtcca cacttttaaa
     4921 aagtgctgta catattctga agagtcattt tgtacactac agtgaagaat gcacacaggt
     4981 aaagtactgc ttaaggagta acgtgtcccc cttatacaca gagcatttgg ggaagatctg
     5041 atgtttcaca ggtggattga ggcagttagt tagattataa agaaactgag ctagatattt
     5101 cgttgtattg cccaactaag tgtaaagtta aattcttagt agaaatttgg ttataccaac
     5161 atcactgtaa aatgcccata agaaaaaata gttcccaagg aagcttctgt ggtccaaggg
     5221 cttgtatata agaattttcg tttagaaaaa gcacactgga tgcattgaga gaccttgtcg
     5281 ggggctgaga atggatgtgt ctggagaaat catgtacctg ttatttaaac atagcatctt
     5341 ctgtcttgag atttttttaa aaaatacttg cctgtctttt tggtcagcta aatgtaaata
     5401 aaaagtatta tctgtta
//
LOCUS       XM_032652853           10675 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cadherin EGF LAG seven-pass G-type
            receptor 2 (CELSR2), transcript variant X1, mRNA.
ACCESSION   XM_032652853
VERSION     XM_032652853.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10675
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10675
                     /gene="CELSR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764316"
     CDS             370..9129
                     /gene="CELSR2"
                     /codon_start=1
                     /product="cadherin EGF LAG seven-pass G-type receptor 2
                     isoform X1"
                     /protein_id="XP_032508744.1"
                     /db_xref="GeneID:116764316"
                     /translation="MRSPAARAPLPTPLPLLLLLLPPLLGDQVGPCRSLGPGGRGSSG
                     ACAPVGWLCPASSSNLWLYTSRCRDAGTELTGHLVPHHDGLRVWCPESGAHIPLPPAP
                     KGCPWSCRLLGVGGHLSPQGKLALPHEHLCLKAPRLRCQSCKLVQTPGFRAGESSAEA
                     SMGGRRKRNVNTAPQFQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDAL
                     FDSRSNHFFSLDPITGAVTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTD
                     TNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYCLLEGPGGSPSEV
                     FEIDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSATASVFLSVEDDNDNAP
                     QFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNALVHYSIMSGNARGQFYLDAQTGA
                     LDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQAT
                     VLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVAAELDRE
                     EVDFYSFGVEARDHGTPALTASASVSVTILDVNDNNPTFTQPEYTVRLNEDAAVGTSV
                     VTVSAVDRDAHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTA
                     SDGTRQDTAQVVVNVTDANTHRPVFQSSHYTVNINEDRPAGTTVVLISATDEDTGENA
                     RITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYLEI
                     LVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDSGLNGRVFYTFQGGDDGG
                     GDFIVESTSGIVRTLRRLDRENVAQYALRAYAVDKGMPPARTPMDVTVAVLDVNDNPP
                     VFEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSGE
                     LTALVDLDYEDRPEYILVIQATSAPLVSRATVHVRLLDRNDNPPVLGNFEILFNNYVT
                     NRSSSFPGGAIGRVPAHDPDISDSLTYSFERGNELSLVLLNASTGELRLSRALDNNRP
                     LEAIMSVLVSDGVHSVTAQCALRVTIITDEMLTHSITLRLEDMSPERFLSPLLGLFIQ
                     AVAATLATPPDHVVVFNVQRDTDAPGGHILNVSLSVGQPPGPGGGPPFLPSEDLQERL
                     YLNRSLLTAISAQRVLPFDDNICLREPCENYMRCVSVLRFDSSAPFIASSSVLFRPIH
                     PVGGLRCRCPPGFTGDYCETEVDLCYSRPCGSHGRCRSREGGYTCLCRDGYTGEHCEV
                     SARSGRCTPGVCKNGGTCVNLLVGGFKCDCPSGDFEKPFCQVTTRSFPARSFITFRGL
                     RQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQEQVQLTFSAGESTTTVSP
                     FVSGGVSDGQWHTVQLKYYNKPLLGQTGLPQGPSEQKVAVVTVDGCDTGAALRFGALL
                     GNYSCAAQGTQGGSKKSLDLTGPLLLGGVPDLPESFPVRTRHFVGCMRNLQVDSRHVD
                     MADFIANNGTVPGCPAKKNVCDSNTCHNGGTCVNQWDAFSCECPLGFGGKSCAQEMAN
                     PQRFLGSSLVAWHGLSLPISQPWHLSLMFRTRQADGVLLQAVTRGRSTITLQLQEGHV
                     VLSVEGTGLQASSLRLEPGRANDGDWHHAQLALGASGGPGHTILSFDYGQQRAEGNLG
                     PRLHGLHLSNITVGGVPGPASGVARGFRGCLQGVRVSETPEGISSLDPSRGESINVEP
                     GCSLPDPCDSNPCPANSYCSDDWDSYSCSCDPGYYGDNCTNVCDLNPCEHQSVCTRKP
                     SDPHGYICECPENYLGPYCETRIDQPCPRGWWGHPTCGPCNCDVSKGFDPDCNKTSGE
                     CHCKENHYRPPGSPACLLCDCYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPFAE
                     VTTNGCEVNYDSCPRAIEAGIWWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLPPN
                     LFNCTSVTFSELKGFAERLQRNESGLDSGRSQRLALLLRNATQHTAGYFGSDVKVAYQ
                     LAARLLAHESTQRGFGLSATQDVHFTENLLQVGSALLDAANKRHWELIQQTEGGTAWL
                     LQHYEAYASALAQNMRHTYLSPFTIVTPNIVISVVRLDKGNFAGAKLPRYEALRGERP
                     PDLETTVILPESVFRETLPVVRPAGLGEAQEPEELARRQRRHPELSQGEAVASVIIYR
                     TLAGLLPHNYDPDKRSLRVPKRPVINTPVVSISVHDDEELLPRALDKPVTVQFRLLET
                     EERTKPICVFWNHSILVSGTGGWSARGCEVVFRNESHVSCQCNHMTSFAVLMDVSRRE
                     NGEILPLKTLTYVALGVTLAALLLTFLFLTILRALRSNQHGIQRNLTAALGLAQLVFL
                     LGINQADLPFACTVIAILLHFLYLCTFSWALLEALHLYRALTEVRDVNAGPMRFYYML
                     GWGVPAFITGLAVGLDPEGYGNPDFCWLSIYDRLIWSFAGPVAFAVSMSVFLYILAAR
                     ASCAAQRQGFEKKGPVSGLRPSFAVLLLLSATWLLALLSVNSDTLLFHYLFAASNCIQ
                     GPFIFLSYVVLSKEVRKALKFACSRKPSPDPALTTKSTLTSSYNCPSPYADGRLYQPY
                     GDSAGSLHSASRSGKSQPSYIPFLLREESTLNPGQGPPGLGNPGGLFLEGQDQQHDPD
                     TDSDSDLSLEDDQSGSYASTHSSDSEEEEEEEEAEATFPGEPGWDSLLGPGAERLPLH
                     STPKDGGLGPGKAPWPGDFGIAAKDSGGNGASEERPRENGDALPREGSLGPLPGPSAQ
                     PHKGEQGILKKKCLPTISEKSSLLRLPLEQGTGSSRGSSASEGSRGGPPPRPPPRQSL
                     QEQLNGVMPIAMSIKAGTVDEDSSGSDSDETSI"
     misc_feature    907..1209
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(928..933,1096..1098,1102..1104,1195..1197,
                     1201..1206)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1231..1539
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1252..1257,1420..1422,1426..1428,1525..1527,
                     1531..1536)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1564..1857
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1582..1587,1741..1743,1747..1749,1843..1845,
                     1849..1854)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1879..2172
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1900..1905,2059..2061,2065..2067,2158..2160,
                     2164..2169)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2194..2478
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2215..2220,2374..2376,2380..2382,2464..2466,
                     2470..2475)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2500..2787
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2521..2526,2674..2676,2680..2682,2773..2775,
                     2779..2784)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2809..3105
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2830..2835,2992..2994,2998..3000,3091..3093,
                     3097..3102)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3127..3411
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3148..3153,3307..3309,3313..3315,3397..3399,
                     3403..3408)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3478..3714
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4219..4326
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    4351..4452
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    4459..5010
                     /gene="CELSR2"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cd00110"
                     /db_xref="CDD:238058"
     misc_feature    5086..5181
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5206..5655
                     /gene="CELSR2"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cd00110"
                     /db_xref="CDD:238058"
     misc_feature    5737..5841
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5848..5949
                     /gene="CELSR2"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    6124..6261
                     /gene="CELSR2"
                     /note="Laminin-type epidermal growth factor-like domai;
                     Region: EGF_Lam; smart00180"
                     /db_xref="CDD:214543"
     misc_feature    order(6124..6126,6130..6132,6160..6162,6181..6183,
                     6187..6189,6214..6216)
                     /gene="CELSR2"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    6268..6456
                     /gene="CELSR2"
                     /note="Domain present in hormone receptors; Region: HormR;
                     smart00008"
                     /db_xref="CDD:214468"
     misc_feature    6505..7221
                     /gene="CELSR2"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     Region: GAIN; pfam16489"
                     /db_xref="CDD:465137"
     misc_feature    7297..7458
                     /gene="CELSR2"
                     /note="G-protein-coupled receptor proteolytic site domain;
                     Region: GPS; smart00303"
                     /db_xref="CDD:197639"
     misc_feature    7471..8232
                     /gene="CELSR2"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    7480..7554
                     /gene="CELSR2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320658"
     misc_feature    7579..7644
                     /gene="CELSR2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320658"
     misc_feature    7672..7740
                     /gene="CELSR2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320658"
     misc_feature    7795..7845
                     /gene="CELSR2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320658"
     misc_feature    7900..7971
                     /gene="CELSR2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320658"
     misc_feature    8038..8106
                     /gene="CELSR2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320658"
     misc_feature    8116..8193
                     /gene="CELSR2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320658"
ORIGIN      
        1 cggccggggc cgggccgggg tccgggtgcg cagctccgcg ggagcaggtg ggctatcccg
       61 cgggagcgag gaacactccg aggatctggg ggccggcagg gccaagggcg cgcggggtcc
      121 gcgggcgcag gtggcgagag acgggtgtgc cagtggaggc gcggcgccag cccgtggtgg
      181 tcggtgtgac cggggcgcgg gcccggctta gggaacggtg ggagcccggt ctccggtgag
      241 gcatcaagga gcaggccccc ggggactgac gccctggcct gggcatgagg cgcggcgggg
      301 cgggcaggag cgggaggagg agccgccgcc gccgccgccg ttgacccggc cggccgggaa
      361 gagggagaga tgcggagccc ggcggcccgc gccccacttc caacaccact gccgctgcta
      421 ctgctcctgc tgccgccact actgggagac caggtggggc cctgtcgttc cctggggcct
      481 gggggacgcg gttcttcggg ggcctgcgct cccgtgggct ggctctgtcc agcctcatcc
      541 tcgaacctct ggctctacac cagccgctgc agggatgcgg ggacggaact gactggccat
      601 ttggtgcccc atcatgatgg tctgagggtc tggtgtccag aatccggggc ccacatcccc
      661 ttgccgccag cgcccaaagg ctgcccctgg agctgtcgtc ttctgggcgt tggaggccac
      721 ctttccccac agggcaagct tgccctgccc catgagcacc tgtgcttaaa ggccccacgg
      781 ctgagatgcc agtcctgtaa gctggtgcag accccagggt tcagggcagg ggaaagctca
      841 gcagaagcgt ccatgggtgg acgtcggaag aggaatgtga atacagcccc ccagtttcag
      901 ccccccagct accaggccac agtgcccgag aaccagccag caggtacccc tgtggcatct
      961 ctgcgggcca tcgacccaga tgagggtgag gcaggtcggc ttgagtacac tatggatgcc
     1021 ctcttcgata gccgctccaa ccatttcttc tccctggacc caatcaccgg tgcagtaacc
     1081 acagccgagg agctggatcg tgagaccaag agcacccatg tcttcagagt cacagcgcag
     1141 gatcacggca tgccccgacg cagtgccctg gccacgctca ccatcttggt gactgatacc
     1201 aatgatcatg accctgtttt tgagcagcag gagtacaagg agagcctcag ggagaacctg
     1261 gaggtgggct atgaggtgct caccgtcaga gccacagatg gtgatgcccc tcccaatgcc
     1321 aatattctgt actgcctgct ggaggggcct gggggcagcc cctctgaagt ctttgagatt
     1381 gaccctcgct ctggggtaat acgaacccgt ggccctgtgg atagggaaga ggtggaatcc
     1441 taccagttga cagtggaagc aagtgatcag ggtcgggacc ccggtccacg gagtgccaca
     1501 gcttctgttt tcctgtctgt ggaggatgat aatgacaatg ccccccagtt cagcgagaag
     1561 cgctatgtgg tccaggtgcg ggaggatgtg accccaggag ctccggtact ccgggtcaca
     1621 gcctcggata gagacaaggg cagcaatgcc ctggtgcatt acagcatcat gagtggcaac
     1681 gcgcggggac agttttactt agatgcccag actggggctc tggacgtggt gagccctctt
     1741 gactatgaga cgaccaagga atacacccta cgggttcgag cacaggatgg cggccgcccc
     1801 cctctctcca acgtctccgg cttggtgaca gtgcaggttc tggatatcaa tgacaacgct
     1861 cccatcttcg tcagcacccc cttccaggct actgtcctgg agagtgtccc cttaggctac
     1921 ctggttctcc atgtccaggc catcgatgct gatgctggtg acaatgcccg cctggaatac
     1981 cgccttgcgg gggtcgggca tgacttcccc ttcaccatca acaatggcac aggctggatc
     2041 tccgtggcgg ctgagctgga ccgggaagag gttgatttct acagctttgg agtagaagcc
     2101 cgcgaccatg gcaccccagc actcactgcc tcggccagtg tcagcgtgac catcctggat
     2161 gtcaatgaca ataacccgac ctttacccaa ccagagtaca cggtgcggct caacgaggat
     2221 gcggccgtgg gcaccagcgt ggtgacggtg tcggccgtgg accgtgatgc ccacagtgtc
     2281 atcacctacc agatcaccag cggcaacacc cgaaaccgct tctccatcac cagccagagt
     2341 gggggggggc tggtgtccct cgccctgcca ctggactaca aactggagcg gcagtacgtg
     2401 ctggctgtta ctgcctctga tggcacacga caggacacag cgcaagtggt ggtgaacgtc
     2461 accgacgcta acacccatcg tcccgtattt cagagctctc actacacggt gaatattaac
     2521 gaggaccggc cagcaggcac cacggtggtg ctgatcagtg ccacagatga ggacacaggt
     2581 gagaatgccc gcatcaccta ctttatggag gacagcatcc cccagttccg cattgatgca
     2641 gatacaggtg ctgtcaccac ccaggccgag ctggattatg aggaccaggt gtcctacacc
     2701 ctggctatca ctgcccggga caatggcatt ccccagaagt ctgacaccac ctacctggag
     2761 atcctggtga acgatgtgaa tgacaatgcc cctcagtttc tgcgggactc ctaccagggc
     2821 agtgtctatg aggatgtgcc ccccttcacc agtgtcctgc agatctcggc cactgaccgt
     2881 gattctggcc ttaacggcag ggtcttctac accttccaag gaggcgatga tggaggtggt
     2941 gactttattg tagagtccac gtcaggcatt gtgcgaacac tgcggaggct ggatcgtgaa
     3001 aatgtggccc agtacgcctt gcgggcatat gcagtggaca aggggatgcc tccagctcgc
     3061 acgcccatgg acgtgacggt cgctgtcttg gatgtgaacg acaatccacc tgtttttgag
     3121 caggatgagt ttgatgtgtt tgttgaagag aacagcccca ttgggctggc tgtggctcgc
     3181 gtcacagcca cggaccctga cgaaggcact aatgcccaga tcatgtacca gatcgtggag
     3241 ggcaacatcc ctgaggtctt ccagctggac atcttctctg gggagctgac cgctctggtg
     3301 gacttggact acgaggaccg gcctgaatac atcctggtca tccaggccac gtcggctccc
     3361 ctggtgagcc gggctacagt gcacgtccgc ctgcttgacc gcaatgacaa cccaccggtg
     3421 ctgggcaact ttgagatcct tttcaacaac tatgtcacca accgctcgag cagcttcccc
     3481 gggggtgcca tcggccgggt gcctgcccac gaccctgaca tctccgacag cctgacttac
     3541 agcttcgagc ggggaaacga actcagcctg gtcctgctca acgcgtccac gggcgagctg
     3601 aggctgagtc gggcactgga caacaaccga cctctggagg ccatcatgag cgtgctggtg
     3661 tcagatggcg tgcacagtgt gaccgctcag tgcgcactgc gcgtcaccat cattaccgac
     3721 gagatgctca cgcacagcat cacgctgcgc ctggaggaca tgtcgcctga gcgcttcctg
     3781 tcgcccctcc tgggtctctt catccaggcc gtggccgcca cgctggccac acccccagac
     3841 cacgtggtgg tcttcaacgt gcagcgggac accgacgccc cgggcggcca catcctcaat
     3901 gtgagcctgt cggtgggcca gccgccaggg cccgggggcg ggcctccctt cctgccttct
     3961 gaggacctgc aggagcgcct gtacctcaac cgcagtctgc tcacggccat ctcggcgcag
     4021 cgcgtgctgc ccttcgacga caacatctgc ctgcgcgagc cctgcgagaa ctacatgcgc
     4081 tgcgtgtcgg tgctgcgctt cgactcctcc gcgcccttca tcgcctcctc ctccgtgctc
     4141 ttccggccca ttcacccagt gggggggctg cgctgccgct gcccgcctgg cttcacgggc
     4201 gactactgcg agacggaggt ggacctctgc tactcgcggc cctgcggctc ccacggccgc
     4261 tgccgcagcc gtgagggcgg ctacacctgc ctctgccgcg atggctacac cggtgagcac
     4321 tgtgaggtga gtgcccgctc aggccgttgc accccgggtg tctgcaagaa tgggggcacc
     4381 tgtgtcaacc tgctggtggg cggcttcaag tgcgactgcc catccggaga ctttgagaag
     4441 cccttctgcc aggtgaccac gcgcagcttc cccgcccgct ccttcatcac cttccggggc
     4501 ctacgccagc gcttccactt caccctggcc ctctcgtttg ccaccaagga gcgtgatggg
     4561 ctgctgttgt acaatgggcg cttcaatgag aagcatgact ttgtggccct cgaggtgatc
     4621 caggagcagg tccagctcac cttctctgca ggggagtcga ccaccaccgt gtccccgttc
     4681 gtgtccggag gggtcagtga cggccagtgg cacacagtgc agctgaagta ctacaataag
     4741 ccgctgttgg gtcagacagg gctcccgcag ggcccatccg agcagaaggt ggccgtggtg
     4801 accgtggatg gctgtgacac aggcgcggcc ctgcgcttcg gagctctgct gggcaactac
     4861 tcctgcgctg cccagggcac ccagggtggc agcaagaagt ctctggacct gacagggccc
     4921 ctgctgctgg gcggggtgcc tgacctgcct gagagcttcc ctgtccgaac ccggcacttc
     4981 gtgggctgca tgaggaacct gcaggtggac agccgccatg tcgacatggc tgacttcatt
     5041 gccaacaacg gcaccgtgcc cggctgccct gccaagaaga acgtgtgtga cagcaacact
     5101 tgccacaatg ggggcacctg tgtgaaccag tgggatgcct tcagctgcga gtgccctctg
     5161 ggcttcgggg gcaagagctg tgcccaggaa atggccaacc cgcagcgctt cctgggcagc
     5221 agcctggtgg cctggcatgg cctctcgctg cccatctctc agccctggca cctcagcctc
     5281 atgttccgca cacgccaggc cgacggcgtc ctgctgcagg ctgtcaccag ggggcgcagc
     5341 accatcaccc tgcagcttca ggagggccac gtcgtgctga gcgtggaggg caccggactc
     5401 caggcctcgt ctctccggct ggagccaggc cgggccaatg atggtgactg gcaccatgca
     5461 cagctggcac tgggagccag tgggggcccc ggccacacca tcctgtcctt cgactatggg
     5521 cagcagcggg cagagggcaa cctgggcccc cggctgcatg ggctacacct gagcaacatt
     5581 accgtcgggg gagtgcctgg gccggccagt ggtgtggccc gcggcttccg gggctgtttg
     5641 cagggtgttc gggtaagcga gacgcccgag ggtattagca gtctggatcc cagccgtggg
     5701 gaaagcatca atgtggagcc aggctgtagc ctgccagacc cctgtgactc gaacccatgt
     5761 cctgccaaca gctattgcag tgacgactgg gacagctatt cctgcagctg cgatccaggt
     5821 tactatggtg acaactgtac taacgtgtgt gacctgaacc catgtgagca tcagtccgtg
     5881 tgtacccgaa agcccagtga cccccatggc tatatctgcg agtgtcccga aaattacctt
     5941 gggccatact gtgagaccag gattgaccag ccttgccccc gaggctggtg gggacacccc
     6001 acgtgcggcc catgcaactg tgacgtcagc aaaggcttcg atccggattg caacaagaca
     6061 agcggcgagt gccactgcaa ggagaaccac taccggcccc ctggcagccc cgcctgcctg
     6121 ctgtgtgact gctaccccac gggctctctg tcccgagtct gtgaccctga ggatggccag
     6181 tgtccatgca agccaggtgt cattgggcgc cagtgtgatc gctgtgacaa cccttttgct
     6241 gaggtcacta ccaacggctg tgaagtgaat tatgacagct gcccacgggc catcgaggct
     6301 gggatctggt ggccccgtac ccgcttcggg ctgcctgctg ctgccccctg ccccaaaggc
     6361 tcctttggga ctgctgtgcg ccactgtgac gagcacagag ggtggctccc cccaaacctc
     6421 ttcaactgca catcagtcac cttctcagag ctgaagggct ttgctgagcg gctgcagcga
     6481 aacgagtcag gcctggactc ggggcgctcc cagcggctgg ccctgcttct gcgtaacgct
     6541 acccaacaca cggctggcta cttcggcagt gacgtcaagg tggcctacca gctggccgct
     6601 cggctattgg cccacgagag cacccagcga ggcttcgggc tgtccgccac acaggatgtg
     6661 cacttcaccg agaatctgct gcaggtgggc agcgccctcc tggatgcagc caacaagcgg
     6721 cactgggagc tgatccagca gacagagggt ggcaccgcct ggctgctcca gcactatgag
     6781 gcctacgcca gtgccctggc ccagaacatg cggcacacct acctaagccc cttcaccatc
     6841 gtcacgccca acattgtcat ctctgtagtt cgcctggaca agggaaactt cgctggggcc
     6901 aagctgcccc gctacgaggc gctgagaggg gagcggcccc cggaccttga gacaacggtc
     6961 attctgcctg agtccgtctt cagagaaaca ctccccgtgg tcaggcccgc gggccttgga
     7021 gaggcccagg agccagagga gctggcacgg cgtcagcggc ggcacccgga gctgagtcag
     7081 ggtgaggcgg tggccagtgt catcatctac cgcaccctgg ctgggctgct gccccataac
     7141 tacgacccag acaagcgcag cctgagagtt cccaaacgcc ctgtcatcaa cacgcccgtg
     7201 gtgagcatca gcgtccacga cgacgaggag cttctgcccc gtgctttgga caagccagtc
     7261 acggtgcagt tccggctgct ggagacggag gagcggacga agcccatctg tgtcttctgg
     7321 aaccattcga tcctggtcag tggcacaggt ggctggtcag cccgaggctg cgaagttgtc
     7381 ttccgcaacg agagccacgt cagctgccag tgcaaccaca tgacgagctt cgccgtgctc
     7441 atggacgtgt ccaggcggga gaatggggag atcctgccac tgaagacgct gacctatgtg
     7501 gccctagggg tcaccttggc tgccctactg ctcactttcc tcttcctcac tattctgcgt
     7561 gccctgcgct ccaaccagca cggcatccaa cggaacctga ctgccgccct gggcctagct
     7621 cagctggtct tcctcctggg aatcaaccag gctgacctcc cttttgcctg cacagtcatc
     7681 gccatcctgc tgcacttcct gtacctctgc accttttcct gggctctgct ggaggccttg
     7741 cacctgtacc gggcactcac cgaggtgcgc gacgtcaatg ccggccccat gcgcttctac
     7801 tacatgctag gctggggtgt gcccgccttc atcacaggtc tagccgtggg cctggacccg
     7861 gagggctatg ggaaccctga cttctgctgg ctctccatct acgataggct catctggagt
     7921 tttgctggcc ccgtggcctt tgctgtctcg atgagtgtct tcctgtacat cctggcggcc
     7981 cgggcgtcct gtgctgccca gcggcagggc tttgagaaga aaggccctgt ctcgggcctg
     8041 cggccctcct tcgctgtcct cctgctgctg agcgccacgt ggctactggc actgctgtct
     8101 gtcaacagtg acaccctcct cttccactac ctctttgctg cttccaattg catccagggc
     8161 cccttcatct tcctctccta tgtggtgctt agcaaggagg tccggaaagc actcaagttt
     8221 gcctgtagcc gcaagcccag ccctgaccct gctctgacca ccaagtccac tctgacctcg
     8281 tcctacaact gccccagccc ctatgcagat ggaaggcttt accagcccta tggagactca
     8341 gcaggctctc tgcacagcgc cagccgctcg ggcaagagtc agcccagcta catccccttc
     8401 ttgctgaggg aggagtccac actgaaccct ggccaagggc cccctggcct ggggaaccct
     8461 ggtggcctat tcctggaagg tcaagaccag cagcatgatc cagacacaga ctctgacagt
     8521 gacctgtccc tggaagatga ccagagtggc tcctatgcct ctacccactc atcagatagt
     8581 gaggaggagg aagaggagga agaggcagag gccaccttcc ctggagagcc gggctgggac
     8641 agcctgctgg ggcctggggc ggagagactg cccctgcaca gtacccccaa ggatgggggc
     8701 ctggggcccg ggaaggcccc ctggccagga gactttggga tcgcagcaaa ggacagtggt
     8761 ggcaatgggg cctctgagga gcggccgcgg gagaatggag atgccctgcc tcgggagggg
     8821 tccctgggtc cccttccagg cccttctgcc caacctcaca aaggtgagca gggcatcctt
     8881 aagaagaagt gtctgcccac catcagtgag aagagcagcc tcctacggct acccctggag
     8941 cagggcacag ggtcttcccg gggctcctca gccagcgagg gcagccgggg tgggccccct
     9001 ccccgccctc caccccggca gagcctccag gagcagctga atggggtcat gcccatcgcc
     9061 atgagcatca aggcaggcac ggtggatgag gactcgtcag gctcggacag cgacgaaaca
     9121 tccatctgag gagcctgggc cttgccggga ggggcaccca ccccacccaa ggccatctag
     9181 tgccaactcc ctcccccacc atccccctca ctgcactttg gacccttggg gccaacatct
     9241 ccaagacaaa gtttttcaga aaagaggaaa aaagaaattt aaaaaaggaa ctccactctt
     9301 catgacttca gggattaatt ttttttatac gctgggaatt gactcccctt tccctcccca
     9361 aagaggatag gacctcccag gatgctttcc cagcctctcc tcagtttccc atctgctgtg
     9421 cctctgggag gaaagggact cttgggggac ctgcccctcg tttgccatca ccaaaaggaa
     9481 aggacaaagc cacatgcacc cagggcatca agccctgcgg gccgcaccgg gcaggcctca
     9541 gtgcggtgag ggcgcagggc cgtgggcact cctcaccccg cctgtgccgc cccttccagg
     9601 aactgaaaaa gccctgtccg gagagcgggc agaaggactc agcgccccca gacccccaaa
     9661 tgctgcatga acacattctg aagggaaccc atgcccctgg gtggcggccg ggccacccca
     9721 gcccctctcc tttccctgga ctctggccgt gcactgcagc ccgggtgttt gctcagttcg
     9781 ctgacccaaa agtgcttcat ttccctgccc gccccatgct ggggaaggcc agtcatgtgt
     9841 tgagcttctt tgctattgtg tgggtgggac agggaggaag aggacagatg gggctggcac
     9901 ggttgccccg tgctgtctcc agcccaggtc tccagtctgg gttccagggt ccactcgccc
     9961 tcctctgaga ccagacaaac cccactgacc tgctgtggcc tctgagacat gttctatttt
    10021 tatccccttc ttggaattgg ctctcttctt cgaaggacca ggtccctatt cctctttctc
    10081 ccccctcacc acccagctcc ctgcgaagag agagttaata tatatttttt atttatttgc
    10141 tttttgtgtt gggatgggtc cagtcccagg gggtctgatg tggccatcag tcaggtcggg
    10201 tgtgtaccca gcagtcctgg cgagggggcc tcaggccctt ccccttgctc caggctgtca
    10261 tctccccacc tctccctccc tcctcagttt tgccaactgc tgttcatctg agtcaccatt
    10321 tatgctgagc atgtattcca gacttgtcac ctattttcct ctggagcagg tggctagaaa
    10381 aagaggctat gagtagaaaa agtgttccta tttctcattt gtaaggctgg tctctggctt
    10441 ttctgccatg gattctttcc ctggcctctc ccctcagcaa ttcctgcaaa gggttaaaaa
    10501 cttaactgtt ttttactact gatgacttga cttaaaaaaa tacaaagatg ctggatgcta
    10561 acttgatact aaccatctga ttgtacagtt tgattgtaac tgtaaatatg gtagcatttt
    10621 gtgctttgtt ttttcagttc tccatgccac tgaataaaac tagttctctg cgggc
//
LOCUS       XM_032652861           10794 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cadherin EGF LAG seven-pass G-type
            receptor 2 (CELSR2), transcript variant X2, mRNA.
ACCESSION   XM_032652861
VERSION     XM_032652861.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10794
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10794
                     /gene="CELSR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764316"
     CDS             498..9248
                     /gene="CELSR2"
                     /codon_start=1
                     /product="cadherin EGF LAG seven-pass G-type receptor 2
                     isoform X2"
                     /protein_id="XP_032508752.1"
                     /db_xref="GeneID:116764316"
                     /translation="MRSPAARAPLPTPLPLLLLLLPPLLGDQVGPCRSLGPGGRGSSG
                     ACAPVGWLCPASSSNLWLYTSRCRDAGTELTGHLVPHHDGLRVWCPESGAHIPLPPAP
                     KGCPWSCRLLGVGGHLSPQGKLALPHEHLCLKAPRLRCQSCKLVQTPGFRAGESSAEA
                     SMGGRRKRNVNTAPQFQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDAL
                     FDSRSNHFFSLDPITGAVTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTD
                     TNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYCLLEGPGGSPSEV
                     FEIDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSATASVFLSVEDDNDNAP
                     QFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNALVHYSIMSGNARGQFYLDAQTGA
                     LDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQAT
                     VLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVAAELDRE
                     EVDFYSFGVEARDHGTPALTASASVSVTILDVNDNNPTFTQPEYTVRLNEDAAVGTSV
                     VTVSAVDRDAHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTA
                     SDGTRQDTAQVVVNVTDANTHRPVFQSSHYTVNINEDRPAGTTVVLISATDEDTGENA
                     RITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYLEI
                     LVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDSGLNGRVFYTFQGGDDGG
                     GDFIVESTSGIVRTLRRLDRENVAQYALRAYAVDKGMPPARTPMDVTVAVLDVNDNPP
                     VFEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSGE
                     LTALVDLDYEDRPEYILVIQATSAPLVSRATVHVRLLDRNDNPPVLGNFEILFNNYVT
                     NRSSSFPGGAIGRVPAHDPDISDSLTYSFERGNELSLVLLNASTGELRLSRALDNNRP
                     LEAIMSVLVSDGVHSVTAQCALRVTIITDEMLTHSITLRLEDMSPERFLSPLLGLFIQ
                     AVAATLATPPDHVVVFNVQRDTDAPGGHILNVSLSVGQPPGPGGGPPFLPSEDLQERL
                     YLNRSLLTAISAQRVLPFDDNICLREPCENYMRCVSVLRFDSSAPFIASSSVLFRPIH
                     PVGGLRCRCPPGFTGDYCETEVDLCYSRPCGSHGRCRSREGGYTCLCRDGYTGEHCEV
                     SARSGRCTPGVCKNGGTCVNLLVGGFKCDCPSGDFEKPFCQVTTRSFPARSFITFRGL
                     RQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQEQVQLTFSAGESTTTVSP
                     FVSGGVSDGQWHTVQLKYYNKPLLGQTGLPQGPSEQKVAVVTVDGCDTGAALRFGALL
                     GNYSCAAQGTQGGSKKSLDLTGPLLLGGVPDLPESFPVRTRHFVGCMRNLQVDSRHVD
                     MADFIANNGTVPGCPAKKNVCDSNTCHNGGTCVNQWDAFSCECPLGFGGKSCAQEMAN
                     PQRFLGSSLVAWHGLSLPISQPWHLSLMFRTRQADGVLLQAVTRGRSTITLQLQEGHV
                     VLSVEGTGLQASSLRLEPGRANDGDWHHAQLALGASGGPGHTILSFDYGQQRAEGNLG
                     PRLHGLHLSNITVGGVPGPASGVARGFRGCLQGVRVSETPEGISSLDPSRGESINVEP
                     GCSLPDPCDSNPCPANSYCSDDWDSYSCSCDPGYYGDNCTNVCDLNPCEHQSVCTRKP
                     SDPHGYICECPENYLGPYCETRIDQPCPRGWWGHPTCGPCNCDVSKGFDPDCNKTSGE
                     CHCKENHYRPPGSPACLLCDCYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPFAE
                     VTTNGCEVNYDSCPRAIEAGIWWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLPPN
                     LFNCTSVTFSELKGFAERLQRNESGLDSGRSQRLALLLRNATQHTAGYFGSDVKVAYQ
                     LAARLLAHESTQRGFGLSATQDVHFTENLLQVGSALLDAANKRHWELIQQTEGGTAWL
                     LQHYEAYASALAQNMRHTYLSPFTIVTPNIVISVVRLDKGNFAGAKLPRYEALRGERP
                     PDLETTVILPESVFRETLPVVRPAGLGEAQEPEELARRQRRHPELSQGEAVASVIIYR
                     TLAGLLPHNYDPDKRSLRVPKRPVINTPVVSISVHDDEELLPRALDKPVTVQFRLLET
                     EERTKPICVFWNHSILVSGTGGWSARGCEVVFRNESHVSCQCNHMTSFAVLMDVSRRE
                     NGEILPLKTLTYVALGVTLAALLLTFLFLTILRALRSNQHGIQRNLTAALGLAQLVFL
                     LGINQADLPFACTVIAILLHFLYLCTFSWALLEALHLYRALTEVRDVNAGPMRFYYML
                     GWGVPAFITGLAVGLDPEGYGNPDFCWLSIYDRLIWSFAGPVAFAVSMSVFLYILAAR
                     ASCAAQRQGFEKKGPVSGLRPSFAVLLLLSATWLLALLSVNSDTLLFHYLFAASNCIQ
                     GPFIFLSYVVLSKEVRKALKFACSRKPSPDPALTTKSTLTSSYNCPSPYADGRLYQPY
                     GDSAGSLHSASRSGKSQPSYIPFLLREESTLNPGQGPPGLGNPGGLFLEGQDQQHDPD
                     TDSDSDLSLEDDQSGSYASTHSSDSEEEEEEEEAEATFPGEPGWDSLLGPGAERLPLH
                     STPKDGGLGPGKAPWPGDFGIAAKDSGGNGASEERPRENGDALPREGSLGPLPGPSAQ
                     PHKGILKKKCLPTISEKSSLLRLPLEQGTGSSRGSSASEGSRGGPPPRPPPRQSLQEQ
                     LNGVMPIAMSIKAGTVDEDSSGSDSDETSI"
     misc_feature    1035..1337
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1056..1061,1224..1226,1230..1232,1323..1325,
                     1329..1334)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1359..1667
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1380..1385,1548..1550,1554..1556,1653..1655,
                     1659..1664)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1692..1985
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1710..1715,1869..1871,1875..1877,1971..1973,
                     1977..1982)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2007..2300
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2028..2033,2187..2189,2193..2195,2286..2288,
                     2292..2297)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2322..2606
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2343..2348,2502..2504,2508..2510,2592..2594,
                     2598..2603)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2628..2915
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2649..2654,2802..2804,2808..2810,2901..2903,
                     2907..2912)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2937..3233
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2958..2963,3120..3122,3126..3128,3219..3221,
                     3225..3230)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3255..3539
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3276..3281,3435..3437,3441..3443,3525..3527,
                     3531..3536)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3606..3842
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4347..4454
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    4479..4580
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    4587..5138
                     /gene="CELSR2"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cd00110"
                     /db_xref="CDD:238058"
     misc_feature    5214..5309
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5334..5783
                     /gene="CELSR2"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cd00110"
                     /db_xref="CDD:238058"
     misc_feature    5865..5969
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5976..6077
                     /gene="CELSR2"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    6252..6389
                     /gene="CELSR2"
                     /note="Laminin-type epidermal growth factor-like domai;
                     Region: EGF_Lam; smart00180"
                     /db_xref="CDD:214543"
     misc_feature    order(6252..6254,6258..6260,6288..6290,6309..6311,
                     6315..6317,6342..6344)
                     /gene="CELSR2"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    6396..6584
                     /gene="CELSR2"
                     /note="Domain present in hormone receptors; Region: HormR;
                     smart00008"
                     /db_xref="CDD:214468"
     misc_feature    6633..7349
                     /gene="CELSR2"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     Region: GAIN; pfam16489"
                     /db_xref="CDD:465137"
     misc_feature    7425..7586
                     /gene="CELSR2"
                     /note="G-protein-coupled receptor proteolytic site domain;
                     Region: GPS; smart00303"
                     /db_xref="CDD:197639"
     misc_feature    7599..8360
                     /gene="CELSR2"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    7608..7682
                     /gene="CELSR2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320658"
     misc_feature    7707..7772
                     /gene="CELSR2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320658"
     misc_feature    7800..7868
                     /gene="CELSR2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320658"
     misc_feature    7923..7973
                     /gene="CELSR2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320658"
     misc_feature    8028..8099
                     /gene="CELSR2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320658"
     misc_feature    8166..8234
                     /gene="CELSR2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320658"
     misc_feature    8244..8321
                     /gene="CELSR2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320658"
ORIGIN      
        1 gcagagctcg cccgcccgcc cgcctgggag gcgagggagc gtggggctgg gcccggggcc
       61 gcggcgacag cagcagcagc agcggcgggg acgcggggca cgagcgggcg gcactgggcc
      121 gtcgggggcg gccggggccg ggccggggtc cgggtgcgca gctccgcggg agcaggtggg
      181 ctatcccgcg ggagcgagga acactccgag gatctggggg ccggcagggc caagggcgcg
      241 cggggtccgc gggcgcaggt ggcgagagac gggtgtgcca gtggaggcgc ggcgccagcc
      301 cgtggtggtc ggtgtgaccg gggcgcgggc ccggcttagg gaacggtggg agcccggtct
      361 ccggtgaggc atcaaggagc aggcccccgg ggactgacgc cctggcctgg gcatgaggcg
      421 cggcggggcg ggcaggagcg ggaggaggag ccgccgccgc cgccgccgtt gacccggccg
      481 gccgggaaga gggagagatg cggagcccgg cggcccgcgc cccacttcca acaccactgc
      541 cgctgctact gctcctgctg ccgccactac tgggagacca ggtggggccc tgtcgttccc
      601 tggggcctgg gggacgcggt tcttcggggg cctgcgctcc cgtgggctgg ctctgtccag
      661 cctcatcctc gaacctctgg ctctacacca gccgctgcag ggatgcgggg acggaactga
      721 ctggccattt ggtgccccat catgatggtc tgagggtctg gtgtccagaa tccggggccc
      781 acatcccctt gccgccagcg cccaaaggct gcccctggag ctgtcgtctt ctgggcgttg
      841 gaggccacct ttccccacag ggcaagcttg ccctgcccca tgagcacctg tgcttaaagg
      901 ccccacggct gagatgccag tcctgtaagc tggtgcagac cccagggttc agggcagggg
      961 aaagctcagc agaagcgtcc atgggtggac gtcggaagag gaatgtgaat acagcccccc
     1021 agtttcagcc ccccagctac caggccacag tgcccgagaa ccagccagca ggtacccctg
     1081 tggcatctct gcgggccatc gacccagatg agggtgaggc aggtcggctt gagtacacta
     1141 tggatgccct cttcgatagc cgctccaacc atttcttctc cctggaccca atcaccggtg
     1201 cagtaaccac agccgaggag ctggatcgtg agaccaagag cacccatgtc ttcagagtca
     1261 cagcgcagga tcacggcatg ccccgacgca gtgccctggc cacgctcacc atcttggtga
     1321 ctgataccaa tgatcatgac cctgtttttg agcagcagga gtacaaggag agcctcaggg
     1381 agaacctgga ggtgggctat gaggtgctca ccgtcagagc cacagatggt gatgcccctc
     1441 ccaatgccaa tattctgtac tgcctgctgg aggggcctgg gggcagcccc tctgaagtct
     1501 ttgagattga ccctcgctct ggggtaatac gaacccgtgg ccctgtggat agggaagagg
     1561 tggaatccta ccagttgaca gtggaagcaa gtgatcaggg tcgggacccc ggtccacgga
     1621 gtgccacagc ttctgttttc ctgtctgtgg aggatgataa tgacaatgcc ccccagttca
     1681 gcgagaagcg ctatgtggtc caggtgcggg aggatgtgac cccaggagct ccggtactcc
     1741 gggtcacagc ctcggataga gacaagggca gcaatgccct ggtgcattac agcatcatga
     1801 gtggcaacgc gcggggacag ttttacttag atgcccagac tggggctctg gacgtggtga
     1861 gccctcttga ctatgagacg accaaggaat acaccctacg ggttcgagca caggatggcg
     1921 gccgcccccc tctctccaac gtctccggct tggtgacagt gcaggttctg gatatcaatg
     1981 acaacgctcc catcttcgtc agcaccccct tccaggctac tgtcctggag agtgtcccct
     2041 taggctacct ggttctccat gtccaggcca tcgatgctga tgctggtgac aatgcccgcc
     2101 tggaataccg ccttgcgggg gtcgggcatg acttcccctt caccatcaac aatggcacag
     2161 gctggatctc cgtggcggct gagctggacc gggaagaggt tgatttctac agctttggag
     2221 tagaagcccg cgaccatggc accccagcac tcactgcctc ggccagtgtc agcgtgacca
     2281 tcctggatgt caatgacaat aacccgacct ttacccaacc agagtacacg gtgcggctca
     2341 acgaggatgc ggccgtgggc accagcgtgg tgacggtgtc ggccgtggac cgtgatgccc
     2401 acagtgtcat cacctaccag atcaccagcg gcaacacccg aaaccgcttc tccatcacca
     2461 gccagagtgg gggggggctg gtgtccctcg ccctgccact ggactacaaa ctggagcggc
     2521 agtacgtgct ggctgttact gcctctgatg gcacacgaca ggacacagcg caagtggtgg
     2581 tgaacgtcac cgacgctaac acccatcgtc ccgtatttca gagctctcac tacacggtga
     2641 atattaacga ggaccggcca gcaggcacca cggtggtgct gatcagtgcc acagatgagg
     2701 acacaggtga gaatgcccgc atcacctact ttatggagga cagcatcccc cagttccgca
     2761 ttgatgcaga tacaggtgct gtcaccaccc aggccgagct ggattatgag gaccaggtgt
     2821 cctacaccct ggctatcact gcccgggaca atggcattcc ccagaagtct gacaccacct
     2881 acctggagat cctggtgaac gatgtgaatg acaatgcccc tcagtttctg cgggactcct
     2941 accagggcag tgtctatgag gatgtgcccc ccttcaccag tgtcctgcag atctcggcca
     3001 ctgaccgtga ttctggcctt aacggcaggg tcttctacac cttccaagga ggcgatgatg
     3061 gaggtggtga ctttattgta gagtccacgt caggcattgt gcgaacactg cggaggctgg
     3121 atcgtgaaaa tgtggcccag tacgccttgc gggcatatgc agtggacaag gggatgcctc
     3181 cagctcgcac gcccatggac gtgacggtcg ctgtcttgga tgtgaacgac aatccacctg
     3241 tttttgagca ggatgagttt gatgtgtttg ttgaagagaa cagccccatt gggctggctg
     3301 tggctcgcgt cacagccacg gaccctgacg aaggcactaa tgcccagatc atgtaccaga
     3361 tcgtggaggg caacatccct gaggtcttcc agctggacat cttctctggg gagctgaccg
     3421 ctctggtgga cttggactac gaggaccggc ctgaatacat cctggtcatc caggccacgt
     3481 cggctcccct ggtgagccgg gctacagtgc acgtccgcct gcttgaccgc aatgacaacc
     3541 caccggtgct gggcaacttt gagatccttt tcaacaacta tgtcaccaac cgctcgagca
     3601 gcttccccgg gggtgccatc ggccgggtgc ctgcccacga ccctgacatc tccgacagcc
     3661 tgacttacag cttcgagcgg ggaaacgaac tcagcctggt cctgctcaac gcgtccacgg
     3721 gcgagctgag gctgagtcgg gcactggaca acaaccgacc tctggaggcc atcatgagcg
     3781 tgctggtgtc agatggcgtg cacagtgtga ccgctcagtg cgcactgcgc gtcaccatca
     3841 ttaccgacga gatgctcacg cacagcatca cgctgcgcct ggaggacatg tcgcctgagc
     3901 gcttcctgtc gcccctcctg ggtctcttca tccaggccgt ggccgccacg ctggccacac
     3961 ccccagacca cgtggtggtc ttcaacgtgc agcgggacac cgacgccccg ggcggccaca
     4021 tcctcaatgt gagcctgtcg gtgggccagc cgccagggcc cgggggcggg cctcccttcc
     4081 tgccttctga ggacctgcag gagcgcctgt acctcaaccg cagtctgctc acggccatct
     4141 cggcgcagcg cgtgctgccc ttcgacgaca acatctgcct gcgcgagccc tgcgagaact
     4201 acatgcgctg cgtgtcggtg ctgcgcttcg actcctccgc gcccttcatc gcctcctcct
     4261 ccgtgctctt ccggcccatt cacccagtgg gggggctgcg ctgccgctgc ccgcctggct
     4321 tcacgggcga ctactgcgag acggaggtgg acctctgcta ctcgcggccc tgcggctccc
     4381 acggccgctg ccgcagccgt gagggcggct acacctgcct ctgccgcgat ggctacaccg
     4441 gtgagcactg tgaggtgagt gcccgctcag gccgttgcac cccgggtgtc tgcaagaatg
     4501 ggggcacctg tgtcaacctg ctggtgggcg gcttcaagtg cgactgccca tccggagact
     4561 ttgagaagcc cttctgccag gtgaccacgc gcagcttccc cgcccgctcc ttcatcacct
     4621 tccggggcct acgccagcgc ttccacttca ccctggccct ctcgtttgcc accaaggagc
     4681 gtgatgggct gctgttgtac aatgggcgct tcaatgagaa gcatgacttt gtggccctcg
     4741 aggtgatcca ggagcaggtc cagctcacct tctctgcagg ggagtcgacc accaccgtgt
     4801 ccccgttcgt gtccggaggg gtcagtgacg gccagtggca cacagtgcag ctgaagtact
     4861 acaataagcc gctgttgggt cagacagggc tcccgcaggg cccatccgag cagaaggtgg
     4921 ccgtggtgac cgtggatggc tgtgacacag gcgcggccct gcgcttcgga gctctgctgg
     4981 gcaactactc ctgcgctgcc cagggcaccc agggtggcag caagaagtct ctggacctga
     5041 cagggcccct gctgctgggc ggggtgcctg acctgcctga gagcttccct gtccgaaccc
     5101 ggcacttcgt gggctgcatg aggaacctgc aggtggacag ccgccatgtc gacatggctg
     5161 acttcattgc caacaacggc accgtgcccg gctgccctgc caagaagaac gtgtgtgaca
     5221 gcaacacttg ccacaatggg ggcacctgtg tgaaccagtg ggatgccttc agctgcgagt
     5281 gccctctggg cttcgggggc aagagctgtg cccaggaaat ggccaacccg cagcgcttcc
     5341 tgggcagcag cctggtggcc tggcatggcc tctcgctgcc catctctcag ccctggcacc
     5401 tcagcctcat gttccgcaca cgccaggccg acggcgtcct gctgcaggct gtcaccaggg
     5461 ggcgcagcac catcaccctg cagcttcagg agggccacgt cgtgctgagc gtggagggca
     5521 ccggactcca ggcctcgtct ctccggctgg agccaggccg ggccaatgat ggtgactggc
     5581 accatgcaca gctggcactg ggagccagtg ggggccccgg ccacaccatc ctgtccttcg
     5641 actatgggca gcagcgggca gagggcaacc tgggcccccg gctgcatggg ctacacctga
     5701 gcaacattac cgtcggggga gtgcctgggc cggccagtgg tgtggcccgc ggcttccggg
     5761 gctgtttgca gggtgttcgg gtaagcgaga cgcccgaggg tattagcagt ctggatccca
     5821 gccgtgggga aagcatcaat gtggagccag gctgtagcct gccagacccc tgtgactcga
     5881 acccatgtcc tgccaacagc tattgcagtg acgactggga cagctattcc tgcagctgcg
     5941 atccaggtta ctatggtgac aactgtacta acgtgtgtga cctgaaccca tgtgagcatc
     6001 agtccgtgtg tacccgaaag cccagtgacc cccatggcta tatctgcgag tgtcccgaaa
     6061 attaccttgg gccatactgt gagaccagga ttgaccagcc ttgcccccga ggctggtggg
     6121 gacaccccac gtgcggccca tgcaactgtg acgtcagcaa aggcttcgat ccggattgca
     6181 acaagacaag cggcgagtgc cactgcaagg agaaccacta ccggccccct ggcagccccg
     6241 cctgcctgct gtgtgactgc taccccacgg gctctctgtc ccgagtctgt gaccctgagg
     6301 atggccagtg tccatgcaag ccaggtgtca ttgggcgcca gtgtgatcgc tgtgacaacc
     6361 cttttgctga ggtcactacc aacggctgtg aagtgaatta tgacagctgc ccacgggcca
     6421 tcgaggctgg gatctggtgg ccccgtaccc gcttcgggct gcctgctgct gccccctgcc
     6481 ccaaaggctc ctttgggact gctgtgcgcc actgtgacga gcacagaggg tggctccccc
     6541 caaacctctt caactgcaca tcagtcacct tctcagagct gaagggcttt gctgagcggc
     6601 tgcagcgaaa cgagtcaggc ctggactcgg ggcgctccca gcggctggcc ctgcttctgc
     6661 gtaacgctac ccaacacacg gctggctact tcggcagtga cgtcaaggtg gcctaccagc
     6721 tggccgctcg gctattggcc cacgagagca cccagcgagg cttcgggctg tccgccacac
     6781 aggatgtgca cttcaccgag aatctgctgc aggtgggcag cgccctcctg gatgcagcca
     6841 acaagcggca ctgggagctg atccagcaga cagagggtgg caccgcctgg ctgctccagc
     6901 actatgaggc ctacgccagt gccctggccc agaacatgcg gcacacctac ctaagcccct
     6961 tcaccatcgt cacgcccaac attgtcatct ctgtagttcg cctggacaag ggaaacttcg
     7021 ctggggccaa gctgccccgc tacgaggcgc tgagagggga gcggcccccg gaccttgaga
     7081 caacggtcat tctgcctgag tccgtcttca gagaaacact ccccgtggtc aggcccgcgg
     7141 gccttggaga ggcccaggag ccagaggagc tggcacggcg tcagcggcgg cacccggagc
     7201 tgagtcaggg tgaggcggtg gccagtgtca tcatctaccg caccctggct gggctgctgc
     7261 cccataacta cgacccagac aagcgcagcc tgagagttcc caaacgccct gtcatcaaca
     7321 cgcccgtggt gagcatcagc gtccacgacg acgaggagct tctgccccgt gctttggaca
     7381 agccagtcac ggtgcagttc cggctgctgg agacggagga gcggacgaag cccatctgtg
     7441 tcttctggaa ccattcgatc ctggtcagtg gcacaggtgg ctggtcagcc cgaggctgcg
     7501 aagttgtctt ccgcaacgag agccacgtca gctgccagtg caaccacatg acgagcttcg
     7561 ccgtgctcat ggacgtgtcc aggcgggaga atggggagat cctgccactg aagacgctga
     7621 cctatgtggc cctaggggtc accttggctg ccctactgct cactttcctc ttcctcacta
     7681 ttctgcgtgc cctgcgctcc aaccagcacg gcatccaacg gaacctgact gccgccctgg
     7741 gcctagctca gctggtcttc ctcctgggaa tcaaccaggc tgacctccct tttgcctgca
     7801 cagtcatcgc catcctgctg cacttcctgt acctctgcac cttttcctgg gctctgctgg
     7861 aggccttgca cctgtaccgg gcactcaccg aggtgcgcga cgtcaatgcc ggccccatgc
     7921 gcttctacta catgctaggc tggggtgtgc ccgccttcat cacaggtcta gccgtgggcc
     7981 tggacccgga gggctatggg aaccctgact tctgctggct ctccatctac gataggctca
     8041 tctggagttt tgctggcccc gtggcctttg ctgtctcgat gagtgtcttc ctgtacatcc
     8101 tggcggcccg ggcgtcctgt gctgcccagc ggcagggctt tgagaagaaa ggccctgtct
     8161 cgggcctgcg gccctccttc gctgtcctcc tgctgctgag cgccacgtgg ctactggcac
     8221 tgctgtctgt caacagtgac accctcctct tccactacct ctttgctgct tccaattgca
     8281 tccagggccc cttcatcttc ctctcctatg tggtgcttag caaggaggtc cggaaagcac
     8341 tcaagtttgc ctgtagccgc aagcccagcc ctgaccctgc tctgaccacc aagtccactc
     8401 tgacctcgtc ctacaactgc cccagcccct atgcagatgg aaggctttac cagccctatg
     8461 gagactcagc aggctctctg cacagcgcca gccgctcggg caagagtcag cccagctaca
     8521 tccccttctt gctgagggag gagtccacac tgaaccctgg ccaagggccc cctggcctgg
     8581 ggaaccctgg tggcctattc ctggaaggtc aagaccagca gcatgatcca gacacagact
     8641 ctgacagtga cctgtccctg gaagatgacc agagtggctc ctatgcctct acccactcat
     8701 cagatagtga ggaggaggaa gaggaggaag aggcagaggc caccttccct ggagagccgg
     8761 gctgggacag cctgctgggg cctggggcgg agagactgcc cctgcacagt acccccaagg
     8821 atgggggcct ggggcccggg aaggccccct ggccaggaga ctttgggatc gcagcaaagg
     8881 acagtggtgg caatggggcc tctgaggagc ggccgcggga gaatggagat gccctgcctc
     8941 gggaggggtc cctgggtccc cttccaggcc cttctgccca acctcacaaa ggcatcctta
     9001 agaagaagtg tctgcccacc atcagtgaga agagcagcct cctacggcta cccctggagc
     9061 agggcacagg gtcttcccgg ggctcctcag ccagcgaggg cagccggggt gggccccctc
     9121 cccgccctcc accccggcag agcctccagg agcagctgaa tggggtcatg cccatcgcca
     9181 tgagcatcaa ggcaggcacg gtggatgagg actcgtcagg ctcggacagc gacgaaacat
     9241 ccatctgagg agcctgggcc ttgccgggag gggcacccac cccacccaag gccatctagt
     9301 gccaactccc tcccccacca tccccctcac tgcactttgg acccttgggg ccaacatctc
     9361 caagacaaag tttttcagaa aagaggaaaa aagaaattta aaaaaggaac tccactcttc
     9421 atgacttcag ggattaattt tttttatacg ctgggaattg actccccttt ccctccccaa
     9481 agaggatagg acctcccagg atgctttccc agcctctcct cagtttccca tctgctgtgc
     9541 ctctgggagg aaagggactc ttgggggacc tgcccctcgt ttgccatcac caaaaggaaa
     9601 ggacaaagcc acatgcaccc agggcatcaa gccctgcggg ccgcaccggg caggcctcag
     9661 tgcggtgagg gcgcagggcc gtgggcactc ctcaccccgc ctgtgccgcc ccttccagga
     9721 actgaaaaag ccctgtccgg agagcgggca gaaggactca gcgcccccag acccccaaat
     9781 gctgcatgaa cacattctga agggaaccca tgcccctggg tggcggccgg gccaccccag
     9841 cccctctcct ttccctggac tctggccgtg cactgcagcc cgggtgtttg ctcagttcgc
     9901 tgacccaaaa gtgcttcatt tccctgcccg ccccatgctg gggaaggcca gtcatgtgtt
     9961 gagcttcttt gctattgtgt gggtgggaca gggaggaaga ggacagatgg ggctggcacg
    10021 gttgccccgt gctgtctcca gcccaggtct ccagtctggg ttccagggtc cactcgccct
    10081 cctctgagac cagacaaacc ccactgacct gctgtggcct ctgagacatg ttctattttt
    10141 atccccttct tggaattggc tctcttcttc gaaggaccag gtccctattc ctctttctcc
    10201 cccctcacca cccagctccc tgcgaagaga gagttaatat atatttttta tttatttgct
    10261 ttttgtgttg ggatgggtcc agtcccaggg ggtctgatgt ggccatcagt caggtcgggt
    10321 gtgtacccag cagtcctggc gagggggcct caggcccttc cccttgctcc aggctgtcat
    10381 ctccccacct ctccctccct cctcagtttt gccaactgct gttcatctga gtcaccattt
    10441 atgctgagca tgtattccag acttgtcacc tattttcctc tggagcaggt ggctagaaaa
    10501 agaggctatg agtagaaaaa gtgttcctat ttctcatttg taaggctggt ctctggcttt
    10561 tctgccatgg attctttccc tggcctctcc cctcagcaat tcctgcaaag ggttaaaaac
    10621 ttaactgttt tttactactg atgacttgac ttaaaaaaat acaaagatgc tggatgctaa
    10681 cttgatacta accatctgat tgtacagttt gattgtaact gtaaatatgg tagcattttg
    10741 tgctttgttt tttcagttct ccatgccact gaataaaact agttctctgc gggc
//
LOCUS       XM_032652866           10422 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cadherin EGF LAG seven-pass G-type
            receptor 2 (CELSR2), transcript variant X3, mRNA.
ACCESSION   XM_032652866
VERSION     XM_032652866.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10422
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10422
                     /gene="CELSR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764316"
     CDS             370..9114
                     /gene="CELSR2"
                     /codon_start=1
                     /product="cadherin EGF LAG seven-pass G-type receptor 2
                     isoform X3"
                     /protein_id="XP_032508757.1"
                     /db_xref="GeneID:116764316"
                     /translation="MRSPAARAPLPTPLPLLLLLLPPLLGDQVGPCRSLGPGGRGSSG
                     ACAPVGWLCPASSSNLWLYTSRCRDAGTELTGHLVPHHDGLRVWCPESGAHIPLPPAP
                     KGCPWSCRLLGVGGHLSPQGKLALPHEHLCLKAPRLRCQSCKLVQTPGFRAGESSAEA
                     SMGGRRKRNVNTAPQFQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDAL
                     FDSRSNHFFSLDPITGAVTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTD
                     TNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYCLLEGPGGSPSEV
                     FEIDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSATASVFLSVEDDNDNAP
                     QFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNALVHYSIMSGNARGQFYLDAQTGA
                     LDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQAT
                     VLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVAAELDRE
                     EVDFYSFGVEARDHGTPALTASASVSVTILDVNDNNPTFTQPEYTVRLNEDAAVGTSV
                     VTVSAVDRDAHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTA
                     SDGTRQDTAQVVVNVTDANTHRPVFQSSHYTVNINEDRPAGTTVVLISATDEDTGENA
                     RITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYLEI
                     LVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDSGLNGRVFYTFQGGDDGG
                     GDFIVESTSGIVRTLRRLDRENVAQYALRAYAVDKGMPPARTPMDVTVAVLDVNDNPP
                     VFEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSGE
                     LTALVDLDYEDRPEYILVIQATSAPLVSRATVHVRLLDRNDNPPVLGNFEILFNNYVT
                     NRSSSFPGGAIGRVPAHDPDISDSLTYSFERGNELSLVLLNASTGELRLSRALDNNRP
                     LEAIMSVLVSDGVHSVTAQCALRVTIITDEMLTHSITLRLEDMSPERFLSPLLGLFIQ
                     AVAATLATPPDHVVVFNVQRDTDAPGGHILNVSLSVGQPPGPGGGPPFLPSEDLQERL
                     YLNRSLLTAISAQRVLPFDDNICLREPCENYMRCVSVLRFDSSAPFIASSSVLFRPIH
                     PVGGLRCRCPPGFTGDYCETEVDLCYSRPCGSHGRCRSREGGYTCLCRDGYTGEHCEV
                     SARSGRCTPGVCKNGGTCVNLLVGGFKCDCPSGDFEKPFCQVTTRSFPARSFITFRGL
                     RQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQEQVQLTFSAGESTTTVSP
                     FVSGGVSDGQWHTVQLKYYNKPLLGQTGLPQGPSEQKVAVVTVDGCDTGAALRFGALL
                     GNYSCAAQGTQGGSKKSLDLTGPLLLGGVPDLPESFPVRTRHFVGCMRNLQVDSRHVD
                     MADFIANNGTVPGCPAKKNVCDSNTCHNGGTCVNQWDAFSCECPLGFGGKSCAQEMAN
                     PQRFLGSSLVAWHGLSLPISQPWHLSLMFRTRQADGVLLQAVTRGRSTITLQLQEGHV
                     VLSVEGTGLQASSLRLEPGRANDGDWHHAQLALGASGGPGHTILSFDYGQQRAEGNLG
                     PRLHGLHLSNITVGGVPGPASGVARGFRGCLQGVRVSETPEGISSLDPSRGESINVEP
                     GCSLPDPCDSNPCPANSYCSDDWDSYSCSCDPGYYGDNCTNVCDLNPCEHQSVCTRKP
                     SDPHGYICECPENYLGPYCETRIDQPCPRGWWGHPTCGPCNCDVSKGFDPDCNKTSGE
                     CHCKENHYRPPGSPACLLCDCYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPFAE
                     VTTNGCEVNYDSCPRAIEAGIWWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLPPN
                     LFNCTSVTFSELKGFAERLQRNESGLDSGRSQRLALLLRNATQHTAGYFGSDVKVAYQ
                     LAARLLAHESTQRGFGLSATQDVHFTENLLQVGSALLDAANKRHWELIQQTEGGTAWL
                     LQHYEAYASALAQNMRHTYLSPFTIVTPNIVISVVRLDKGNFAGAKLPRYEALRGERP
                     PDLETTVILPESVFRETLPVVRPAGLGEAQEPEELARRQRRHPELSQGEAVASVIIYR
                     TLAGLLPHNYDPDKRSLRVPKRPVINTPVVSISVHDDEELLPRALDKPVTVQFRLLET
                     EERTKPICVFWNHSILVSGTGGWSARGCEVVFRNESHVSCQCNHMTSFAVLMDVSRRE
                     NGEILPLKTLTYVALGVTLAALLLTFLFLTILRALRSNQHGIQRNLTAALGLAQLVFL
                     LGINQADLPFACTVIAILLHFLYLCTFSWALLEALHLYRALTEVRDVNAGPMRFYYML
                     GWGVPAFITGLAVGLDPEGYGNPDFCWLSIYDRLIWSFAGPVAFAVSMSVFLYILAAR
                     ASCAAQRQGFEKKGPVSGLRPSFAVLLLLSATWLLALLSVNSDTLLFHYLFAASNCIQ
                     GPFIFLSYVVLSKEVRKALKFACSRKPSPDPALTTKSTLTSSYNCPSPYADGRLYQPY
                     GDSAGSLHSASRSGKSQPSYIPFLLREESTLNPGQGPPGLGNPGGLFLEGQDQQHDPD
                     TDSDSDLSLEDDQSGSYASTHSSDSEEEEEEEEAEATFPGEPGWDSLLGPGAERLPLH
                     STPKDGGLGPGKAPWPGDFGIAAKDSGGNGASEERPRENGDALPREGSLGPLPGPSAQ
                     PHKGEQGILKKKCLPTISEKSSLLRLPLEQGTGSSRGSSASEGSRGGPPPRPPPRQSL
                     QEQLNGVMPIAMSIKAGTVDEDSSGSEG"
     misc_feature    907..1209
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(928..933,1096..1098,1102..1104,1195..1197,
                     1201..1206)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1231..1539
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1252..1257,1420..1422,1426..1428,1525..1527,
                     1531..1536)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1564..1857
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1582..1587,1741..1743,1747..1749,1843..1845,
                     1849..1854)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1879..2172
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1900..1905,2059..2061,2065..2067,2158..2160,
                     2164..2169)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2194..2478
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2215..2220,2374..2376,2380..2382,2464..2466,
                     2470..2475)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2500..2787
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2521..2526,2674..2676,2680..2682,2773..2775,
                     2779..2784)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2809..3105
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2830..2835,2992..2994,2998..3000,3091..3093,
                     3097..3102)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3127..3411
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3148..3153,3307..3309,3313..3315,3397..3399,
                     3403..3408)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3478..3714
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4219..4326
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    4351..4452
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    4459..5010
                     /gene="CELSR2"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cd00110"
                     /db_xref="CDD:238058"
     misc_feature    5086..5181
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5206..5655
                     /gene="CELSR2"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cd00110"
                     /db_xref="CDD:238058"
     misc_feature    5737..5841
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5848..5949
                     /gene="CELSR2"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    6124..6261
                     /gene="CELSR2"
                     /note="Laminin-type epidermal growth factor-like domai;
                     Region: EGF_Lam; smart00180"
                     /db_xref="CDD:214543"
     misc_feature    order(6124..6126,6130..6132,6160..6162,6181..6183,
                     6187..6189,6214..6216)
                     /gene="CELSR2"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    6268..6456
                     /gene="CELSR2"
                     /note="Domain present in hormone receptors; Region: HormR;
                     smart00008"
                     /db_xref="CDD:214468"
     misc_feature    6505..7221
                     /gene="CELSR2"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     Region: GAIN; pfam16489"
                     /db_xref="CDD:465137"
     misc_feature    7297..7458
                     /gene="CELSR2"
                     /note="G-protein-coupled receptor proteolytic site domain;
                     Region: GPS; smart00303"
                     /db_xref="CDD:197639"
     misc_feature    7471..8232
                     /gene="CELSR2"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    7480..7554
                     /gene="CELSR2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320658"
     misc_feature    7579..7644
                     /gene="CELSR2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320658"
     misc_feature    7672..7740
                     /gene="CELSR2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320658"
     misc_feature    7795..7845
                     /gene="CELSR2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320658"
     misc_feature    7900..7971
                     /gene="CELSR2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320658"
     misc_feature    8038..8106
                     /gene="CELSR2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320658"
     misc_feature    8116..8193
                     /gene="CELSR2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320658"
ORIGIN      
        1 cggccggggc cgggccgggg tccgggtgcg cagctccgcg ggagcaggtg ggctatcccg
       61 cgggagcgag gaacactccg aggatctggg ggccggcagg gccaagggcg cgcggggtcc
      121 gcgggcgcag gtggcgagag acgggtgtgc cagtggaggc gcggcgccag cccgtggtgg
      181 tcggtgtgac cggggcgcgg gcccggctta gggaacggtg ggagcccggt ctccggtgag
      241 gcatcaagga gcaggccccc ggggactgac gccctggcct gggcatgagg cgcggcgggg
      301 cgggcaggag cgggaggagg agccgccgcc gccgccgccg ttgacccggc cggccgggaa
      361 gagggagaga tgcggagccc ggcggcccgc gccccacttc caacaccact gccgctgcta
      421 ctgctcctgc tgccgccact actgggagac caggtggggc cctgtcgttc cctggggcct
      481 gggggacgcg gttcttcggg ggcctgcgct cccgtgggct ggctctgtcc agcctcatcc
      541 tcgaacctct ggctctacac cagccgctgc agggatgcgg ggacggaact gactggccat
      601 ttggtgcccc atcatgatgg tctgagggtc tggtgtccag aatccggggc ccacatcccc
      661 ttgccgccag cgcccaaagg ctgcccctgg agctgtcgtc ttctgggcgt tggaggccac
      721 ctttccccac agggcaagct tgccctgccc catgagcacc tgtgcttaaa ggccccacgg
      781 ctgagatgcc agtcctgtaa gctggtgcag accccagggt tcagggcagg ggaaagctca
      841 gcagaagcgt ccatgggtgg acgtcggaag aggaatgtga atacagcccc ccagtttcag
      901 ccccccagct accaggccac agtgcccgag aaccagccag caggtacccc tgtggcatct
      961 ctgcgggcca tcgacccaga tgagggtgag gcaggtcggc ttgagtacac tatggatgcc
     1021 ctcttcgata gccgctccaa ccatttcttc tccctggacc caatcaccgg tgcagtaacc
     1081 acagccgagg agctggatcg tgagaccaag agcacccatg tcttcagagt cacagcgcag
     1141 gatcacggca tgccccgacg cagtgccctg gccacgctca ccatcttggt gactgatacc
     1201 aatgatcatg accctgtttt tgagcagcag gagtacaagg agagcctcag ggagaacctg
     1261 gaggtgggct atgaggtgct caccgtcaga gccacagatg gtgatgcccc tcccaatgcc
     1321 aatattctgt actgcctgct ggaggggcct gggggcagcc cctctgaagt ctttgagatt
     1381 gaccctcgct ctggggtaat acgaacccgt ggccctgtgg atagggaaga ggtggaatcc
     1441 taccagttga cagtggaagc aagtgatcag ggtcgggacc ccggtccacg gagtgccaca
     1501 gcttctgttt tcctgtctgt ggaggatgat aatgacaatg ccccccagtt cagcgagaag
     1561 cgctatgtgg tccaggtgcg ggaggatgtg accccaggag ctccggtact ccgggtcaca
     1621 gcctcggata gagacaaggg cagcaatgcc ctggtgcatt acagcatcat gagtggcaac
     1681 gcgcggggac agttttactt agatgcccag actggggctc tggacgtggt gagccctctt
     1741 gactatgaga cgaccaagga atacacccta cgggttcgag cacaggatgg cggccgcccc
     1801 cctctctcca acgtctccgg cttggtgaca gtgcaggttc tggatatcaa tgacaacgct
     1861 cccatcttcg tcagcacccc cttccaggct actgtcctgg agagtgtccc cttaggctac
     1921 ctggttctcc atgtccaggc catcgatgct gatgctggtg acaatgcccg cctggaatac
     1981 cgccttgcgg gggtcgggca tgacttcccc ttcaccatca acaatggcac aggctggatc
     2041 tccgtggcgg ctgagctgga ccgggaagag gttgatttct acagctttgg agtagaagcc
     2101 cgcgaccatg gcaccccagc actcactgcc tcggccagtg tcagcgtgac catcctggat
     2161 gtcaatgaca ataacccgac ctttacccaa ccagagtaca cggtgcggct caacgaggat
     2221 gcggccgtgg gcaccagcgt ggtgacggtg tcggccgtgg accgtgatgc ccacagtgtc
     2281 atcacctacc agatcaccag cggcaacacc cgaaaccgct tctccatcac cagccagagt
     2341 gggggggggc tggtgtccct cgccctgcca ctggactaca aactggagcg gcagtacgtg
     2401 ctggctgtta ctgcctctga tggcacacga caggacacag cgcaagtggt ggtgaacgtc
     2461 accgacgcta acacccatcg tcccgtattt cagagctctc actacacggt gaatattaac
     2521 gaggaccggc cagcaggcac cacggtggtg ctgatcagtg ccacagatga ggacacaggt
     2581 gagaatgccc gcatcaccta ctttatggag gacagcatcc cccagttccg cattgatgca
     2641 gatacaggtg ctgtcaccac ccaggccgag ctggattatg aggaccaggt gtcctacacc
     2701 ctggctatca ctgcccggga caatggcatt ccccagaagt ctgacaccac ctacctggag
     2761 atcctggtga acgatgtgaa tgacaatgcc cctcagtttc tgcgggactc ctaccagggc
     2821 agtgtctatg aggatgtgcc ccccttcacc agtgtcctgc agatctcggc cactgaccgt
     2881 gattctggcc ttaacggcag ggtcttctac accttccaag gaggcgatga tggaggtggt
     2941 gactttattg tagagtccac gtcaggcatt gtgcgaacac tgcggaggct ggatcgtgaa
     3001 aatgtggccc agtacgcctt gcgggcatat gcagtggaca aggggatgcc tccagctcgc
     3061 acgcccatgg acgtgacggt cgctgtcttg gatgtgaacg acaatccacc tgtttttgag
     3121 caggatgagt ttgatgtgtt tgttgaagag aacagcccca ttgggctggc tgtggctcgc
     3181 gtcacagcca cggaccctga cgaaggcact aatgcccaga tcatgtacca gatcgtggag
     3241 ggcaacatcc ctgaggtctt ccagctggac atcttctctg gggagctgac cgctctggtg
     3301 gacttggact acgaggaccg gcctgaatac atcctggtca tccaggccac gtcggctccc
     3361 ctggtgagcc gggctacagt gcacgtccgc ctgcttgacc gcaatgacaa cccaccggtg
     3421 ctgggcaact ttgagatcct tttcaacaac tatgtcacca accgctcgag cagcttcccc
     3481 gggggtgcca tcggccgggt gcctgcccac gaccctgaca tctccgacag cctgacttac
     3541 agcttcgagc ggggaaacga actcagcctg gtcctgctca acgcgtccac gggcgagctg
     3601 aggctgagtc gggcactgga caacaaccga cctctggagg ccatcatgag cgtgctggtg
     3661 tcagatggcg tgcacagtgt gaccgctcag tgcgcactgc gcgtcaccat cattaccgac
     3721 gagatgctca cgcacagcat cacgctgcgc ctggaggaca tgtcgcctga gcgcttcctg
     3781 tcgcccctcc tgggtctctt catccaggcc gtggccgcca cgctggccac acccccagac
     3841 cacgtggtgg tcttcaacgt gcagcgggac accgacgccc cgggcggcca catcctcaat
     3901 gtgagcctgt cggtgggcca gccgccaggg cccgggggcg ggcctccctt cctgccttct
     3961 gaggacctgc aggagcgcct gtacctcaac cgcagtctgc tcacggccat ctcggcgcag
     4021 cgcgtgctgc ccttcgacga caacatctgc ctgcgcgagc cctgcgagaa ctacatgcgc
     4081 tgcgtgtcgg tgctgcgctt cgactcctcc gcgcccttca tcgcctcctc ctccgtgctc
     4141 ttccggccca ttcacccagt gggggggctg cgctgccgct gcccgcctgg cttcacgggc
     4201 gactactgcg agacggaggt ggacctctgc tactcgcggc cctgcggctc ccacggccgc
     4261 tgccgcagcc gtgagggcgg ctacacctgc ctctgccgcg atggctacac cggtgagcac
     4321 tgtgaggtga gtgcccgctc aggccgttgc accccgggtg tctgcaagaa tgggggcacc
     4381 tgtgtcaacc tgctggtggg cggcttcaag tgcgactgcc catccggaga ctttgagaag
     4441 cccttctgcc aggtgaccac gcgcagcttc cccgcccgct ccttcatcac cttccggggc
     4501 ctacgccagc gcttccactt caccctggcc ctctcgtttg ccaccaagga gcgtgatggg
     4561 ctgctgttgt acaatgggcg cttcaatgag aagcatgact ttgtggccct cgaggtgatc
     4621 caggagcagg tccagctcac cttctctgca ggggagtcga ccaccaccgt gtccccgttc
     4681 gtgtccggag gggtcagtga cggccagtgg cacacagtgc agctgaagta ctacaataag
     4741 ccgctgttgg gtcagacagg gctcccgcag ggcccatccg agcagaaggt ggccgtggtg
     4801 accgtggatg gctgtgacac aggcgcggcc ctgcgcttcg gagctctgct gggcaactac
     4861 tcctgcgctg cccagggcac ccagggtggc agcaagaagt ctctggacct gacagggccc
     4921 ctgctgctgg gcggggtgcc tgacctgcct gagagcttcc ctgtccgaac ccggcacttc
     4981 gtgggctgca tgaggaacct gcaggtggac agccgccatg tcgacatggc tgacttcatt
     5041 gccaacaacg gcaccgtgcc cggctgccct gccaagaaga acgtgtgtga cagcaacact
     5101 tgccacaatg ggggcacctg tgtgaaccag tgggatgcct tcagctgcga gtgccctctg
     5161 ggcttcgggg gcaagagctg tgcccaggaa atggccaacc cgcagcgctt cctgggcagc
     5221 agcctggtgg cctggcatgg cctctcgctg cccatctctc agccctggca cctcagcctc
     5281 atgttccgca cacgccaggc cgacggcgtc ctgctgcagg ctgtcaccag ggggcgcagc
     5341 accatcaccc tgcagcttca ggagggccac gtcgtgctga gcgtggaggg caccggactc
     5401 caggcctcgt ctctccggct ggagccaggc cgggccaatg atggtgactg gcaccatgca
     5461 cagctggcac tgggagccag tgggggcccc ggccacacca tcctgtcctt cgactatggg
     5521 cagcagcggg cagagggcaa cctgggcccc cggctgcatg ggctacacct gagcaacatt
     5581 accgtcgggg gagtgcctgg gccggccagt ggtgtggccc gcggcttccg gggctgtttg
     5641 cagggtgttc gggtaagcga gacgcccgag ggtattagca gtctggatcc cagccgtggg
     5701 gaaagcatca atgtggagcc aggctgtagc ctgccagacc cctgtgactc gaacccatgt
     5761 cctgccaaca gctattgcag tgacgactgg gacagctatt cctgcagctg cgatccaggt
     5821 tactatggtg acaactgtac taacgtgtgt gacctgaacc catgtgagca tcagtccgtg
     5881 tgtacccgaa agcccagtga cccccatggc tatatctgcg agtgtcccga aaattacctt
     5941 gggccatact gtgagaccag gattgaccag ccttgccccc gaggctggtg gggacacccc
     6001 acgtgcggcc catgcaactg tgacgtcagc aaaggcttcg atccggattg caacaagaca
     6061 agcggcgagt gccactgcaa ggagaaccac taccggcccc ctggcagccc cgcctgcctg
     6121 ctgtgtgact gctaccccac gggctctctg tcccgagtct gtgaccctga ggatggccag
     6181 tgtccatgca agccaggtgt cattgggcgc cagtgtgatc gctgtgacaa cccttttgct
     6241 gaggtcacta ccaacggctg tgaagtgaat tatgacagct gcccacgggc catcgaggct
     6301 gggatctggt ggccccgtac ccgcttcggg ctgcctgctg ctgccccctg ccccaaaggc
     6361 tcctttggga ctgctgtgcg ccactgtgac gagcacagag ggtggctccc cccaaacctc
     6421 ttcaactgca catcagtcac cttctcagag ctgaagggct ttgctgagcg gctgcagcga
     6481 aacgagtcag gcctggactc ggggcgctcc cagcggctgg ccctgcttct gcgtaacgct
     6541 acccaacaca cggctggcta cttcggcagt gacgtcaagg tggcctacca gctggccgct
     6601 cggctattgg cccacgagag cacccagcga ggcttcgggc tgtccgccac acaggatgtg
     6661 cacttcaccg agaatctgct gcaggtgggc agcgccctcc tggatgcagc caacaagcgg
     6721 cactgggagc tgatccagca gacagagggt ggcaccgcct ggctgctcca gcactatgag
     6781 gcctacgcca gtgccctggc ccagaacatg cggcacacct acctaagccc cttcaccatc
     6841 gtcacgccca acattgtcat ctctgtagtt cgcctggaca agggaaactt cgctggggcc
     6901 aagctgcccc gctacgaggc gctgagaggg gagcggcccc cggaccttga gacaacggtc
     6961 attctgcctg agtccgtctt cagagaaaca ctccccgtgg tcaggcccgc gggccttgga
     7021 gaggcccagg agccagagga gctggcacgg cgtcagcggc ggcacccgga gctgagtcag
     7081 ggtgaggcgg tggccagtgt catcatctac cgcaccctgg ctgggctgct gccccataac
     7141 tacgacccag acaagcgcag cctgagagtt cccaaacgcc ctgtcatcaa cacgcccgtg
     7201 gtgagcatca gcgtccacga cgacgaggag cttctgcccc gtgctttgga caagccagtc
     7261 acggtgcagt tccggctgct ggagacggag gagcggacga agcccatctg tgtcttctgg
     7321 aaccattcga tcctggtcag tggcacaggt ggctggtcag cccgaggctg cgaagttgtc
     7381 ttccgcaacg agagccacgt cagctgccag tgcaaccaca tgacgagctt cgccgtgctc
     7441 atggacgtgt ccaggcggga gaatggggag atcctgccac tgaagacgct gacctatgtg
     7501 gccctagggg tcaccttggc tgccctactg ctcactttcc tcttcctcac tattctgcgt
     7561 gccctgcgct ccaaccagca cggcatccaa cggaacctga ctgccgccct gggcctagct
     7621 cagctggtct tcctcctggg aatcaaccag gctgacctcc cttttgcctg cacagtcatc
     7681 gccatcctgc tgcacttcct gtacctctgc accttttcct gggctctgct ggaggccttg
     7741 cacctgtacc gggcactcac cgaggtgcgc gacgtcaatg ccggccccat gcgcttctac
     7801 tacatgctag gctggggtgt gcccgccttc atcacaggtc tagccgtggg cctggacccg
     7861 gagggctatg ggaaccctga cttctgctgg ctctccatct acgataggct catctggagt
     7921 tttgctggcc ccgtggcctt tgctgtctcg atgagtgtct tcctgtacat cctggcggcc
     7981 cgggcgtcct gtgctgccca gcggcagggc tttgagaaga aaggccctgt ctcgggcctg
     8041 cggccctcct tcgctgtcct cctgctgctg agcgccacgt ggctactggc actgctgtct
     8101 gtcaacagtg acaccctcct cttccactac ctctttgctg cttccaattg catccagggc
     8161 cccttcatct tcctctccta tgtggtgctt agcaaggagg tccggaaagc actcaagttt
     8221 gcctgtagcc gcaagcccag ccctgaccct gctctgacca ccaagtccac tctgacctcg
     8281 tcctacaact gccccagccc ctatgcagat ggaaggcttt accagcccta tggagactca
     8341 gcaggctctc tgcacagcgc cagccgctcg ggcaagagtc agcccagcta catccccttc
     8401 ttgctgaggg aggagtccac actgaaccct ggccaagggc cccctggcct ggggaaccct
     8461 ggtggcctat tcctggaagg tcaagaccag cagcatgatc cagacacaga ctctgacagt
     8521 gacctgtccc tggaagatga ccagagtggc tcctatgcct ctacccactc atcagatagt
     8581 gaggaggagg aagaggagga agaggcagag gccaccttcc ctggagagcc gggctgggac
     8641 agcctgctgg ggcctggggc ggagagactg cccctgcaca gtacccccaa ggatgggggc
     8701 ctggggcccg ggaaggcccc ctggccagga gactttggga tcgcagcaaa ggacagtggt
     8761 ggcaatgggg cctctgagga gcggccgcgg gagaatggag atgccctgcc tcgggagggg
     8821 tccctgggtc cccttccagg cccttctgcc caacctcaca aaggtgagca gggcatcctt
     8881 aagaagaagt gtctgcccac catcagtgag aagagcagcc tcctacggct acccctggag
     8941 cagggcacag ggtcttcccg gggctcctca gccagcgagg gcagccgggg tgggccccct
     9001 ccccgccctc caccccggca gagcctccag gagcagctga atggggtcat gcccatcgcc
     9061 atgagcatca aggcaggcac ggtggatgag gactcgtcag gctcggaagg ataggacctc
     9121 ccaggatgct ttcccagcct ctcctcagtt tcccatctgc tgtgcctctg ggaggaaagg
     9181 gactcttggg ggacctgccc ctcgtttgcc atcaccaaaa ggaaaggaca aagccacatg
     9241 cacccagggc atcaagccct gcgggccgca ccgggcaggc ctcagtgcgg tgagggcgca
     9301 gggccgtggg cactcctcac cccgcctgtg ccgccccttc caggaactga aaaagccctg
     9361 tccggagagc gggcagaagg actcagcgcc cccagacccc caaatgctgc atgaacacat
     9421 tctgaaggga acccatgccc ctgggtggcg gccgggccac cccagcccct ctcctttccc
     9481 tggactctgg ccgtgcactg cagcccgggt gtttgctcag ttcgctgacc caaaagtgct
     9541 tcatttccct gcccgcccca tgctggggaa ggccagtcat gtgttgagct tctttgctat
     9601 tgtgtgggtg ggacagggag gaagaggaca gatggggctg gcacggttgc cccgtgctgt
     9661 ctccagccca ggtctccagt ctgggttcca gggtccactc gccctcctct gagaccagac
     9721 aaaccccact gacctgctgt ggcctctgag acatgttcta tttttatccc cttcttggaa
     9781 ttggctctct tcttcgaagg accaggtccc tattcctctt tctcccccct caccacccag
     9841 ctccctgcga agagagagtt aatatatatt ttttatttat ttgctttttg tgttgggatg
     9901 ggtccagtcc cagggggtct gatgtggcca tcagtcaggt cgggtgtgta cccagcagtc
     9961 ctggcgaggg ggcctcaggc ccttcccctt gctccaggct gtcatctccc cacctctccc
    10021 tccctcctca gttttgccaa ctgctgttca tctgagtcac catttatgct gagcatgtat
    10081 tccagacttg tcacctattt tcctctggag caggtggcta gaaaaagagg ctatgagtag
    10141 aaaaagtgtt cctatttctc atttgtaagg ctggtctctg gcttttctgc catggattct
    10201 ttccctggcc tctcccctca gcaattcctg caaagggtta aaaacttaac tgttttttac
    10261 tactgatgac ttgacttaaa aaaatacaaa gatgctggat gctaacttga tactaaccat
    10321 ctgattgtac agtttgattg taactgtaaa tatggtagca ttttgtgctt tgttttttca
    10381 gttctccatg ccactgaata aaactagttc tctgcgggct ga
//
LOCUS       XM_032652874           10186 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cadherin EGF LAG seven-pass G-type
            receptor 2 (CELSR2), transcript variant X4, mRNA.
ACCESSION   XM_032652874
VERSION     XM_032652874.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10186
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10186
                     /gene="CELSR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764316"
     CDS             370..9114
                     /gene="CELSR2"
                     /codon_start=1
                     /product="cadherin EGF LAG seven-pass G-type receptor 2
                     isoform X4"
                     /protein_id="XP_032508765.1"
                     /db_xref="GeneID:116764316"
                     /translation="MRSPAARAPLPTPLPLLLLLLPPLLGDQVGPCRSLGPGGRGSSG
                     ACAPVGWLCPASSSNLWLYTSRCRDAGTELTGHLVPHHDGLRVWCPESGAHIPLPPAP
                     KGCPWSCRLLGVGGHLSPQGKLALPHEHLCLKAPRLRCQSCKLVQTPGFRAGESSAEA
                     SMGGRRKRNVNTAPQFQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDAL
                     FDSRSNHFFSLDPITGAVTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTD
                     TNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYCLLEGPGGSPSEV
                     FEIDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSATASVFLSVEDDNDNAP
                     QFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNALVHYSIMSGNARGQFYLDAQTGA
                     LDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQAT
                     VLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVAAELDRE
                     EVDFYSFGVEARDHGTPALTASASVSVTILDVNDNNPTFTQPEYTVRLNEDAAVGTSV
                     VTVSAVDRDAHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTA
                     SDGTRQDTAQVVVNVTDANTHRPVFQSSHYTVNINEDRPAGTTVVLISATDEDTGENA
                     RITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYLEI
                     LVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDSGLNGRVFYTFQGGDDGG
                     GDFIVESTSGIVRTLRRLDRENVAQYALRAYAVDKGMPPARTPMDVTVAVLDVNDNPP
                     VFEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSGE
                     LTALVDLDYEDRPEYILVIQATSAPLVSRATVHVRLLDRNDNPPVLGNFEILFNNYVT
                     NRSSSFPGGAIGRVPAHDPDISDSLTYSFERGNELSLVLLNASTGELRLSRALDNNRP
                     LEAIMSVLVSDGVHSVTAQCALRVTIITDEMLTHSITLRLEDMSPERFLSPLLGLFIQ
                     AVAATLATPPDHVVVFNVQRDTDAPGGHILNVSLSVGQPPGPGGGPPFLPSEDLQERL
                     YLNRSLLTAISAQRVLPFDDNICLREPCENYMRCVSVLRFDSSAPFIASSSVLFRPIH
                     PVGGLRCRCPPGFTGDYCETEVDLCYSRPCGSHGRCRSREGGYTCLCRDGYTGEHCEV
                     SARSGRCTPGVCKNGGTCVNLLVGGFKCDCPSGDFEKPFCQVTTRSFPARSFITFRGL
                     RQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQEQVQLTFSAGESTTTVSP
                     FVSGGVSDGQWHTVQLKYYNKPLLGQTGLPQGPSEQKVAVVTVDGCDTGAALRFGALL
                     GNYSCAAQGTQGGSKKSLDLTGPLLLGGVPDLPESFPVRTRHFVGCMRNLQVDSRHVD
                     MADFIANNGTVPGCPAKKNVCDSNTCHNGGTCVNQWDAFSCECPLGFGGKSCAQEMAN
                     PQRFLGSSLVAWHGLSLPISQPWHLSLMFRTRQADGVLLQAVTRGRSTITLQLQEGHV
                     VLSVEGTGLQASSLRLEPGRANDGDWHHAQLALGASGGPGHTILSFDYGQQRAEGNLG
                     PRLHGLHLSNITVGGVPGPASGVARGFRGCLQGVRVSETPEGISSLDPSRGESINVEP
                     GCSLPDPCDSNPCPANSYCSDDWDSYSCSCDPGYYGDNCTNVCDLNPCEHQSVCTRKP
                     SDPHGYICECPENYLGPYCETRIDQPCPRGWWGHPTCGPCNCDVSKGFDPDCNKTSGE
                     CHCKENHYRPPGSPACLLCDCYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPFAE
                     VTTNGCEVNYDSCPRAIEAGIWWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLPPN
                     LFNCTSVTFSELKGFAERLQRNESGLDSGRSQRLALLLRNATQHTAGYFGSDVKVAYQ
                     LAARLLAHESTQRGFGLSATQDVHFTENLLQVGSALLDAANKRHWELIQQTEGGTAWL
                     LQHYEAYASALAQNMRHTYLSPFTIVTPNIVISVVRLDKGNFAGAKLPRYEALRGERP
                     PDLETTVILPESVFRETLPVVRPAGLGEAQEPEELARRQRRHPELSQGEAVASVIIYR
                     TLAGLLPHNYDPDKRSLRVPKRPVINTPVVSISVHDDEELLPRALDKPVTVQFRLLET
                     EERTKPICVFWNHSILVSGTGGWSARGCEVVFRNESHVSCQCNHMTSFAVLMDVSRRE
                     NGEILPLKTLTYVALGVTLAALLLTFLFLTILRALRSNQHGIQRNLTAALGLAQLVFL
                     LGINQADLPFACTVIAILLHFLYLCTFSWALLEALHLYRALTEVRDVNAGPMRFYYML
                     GWGVPAFITGLAVGLDPEGYGNPDFCWLSIYDRLIWSFAGPVAFAVSMSVFLYILAAR
                     ASCAAQRQGFEKKGPVSGLRPSFAVLLLLSATWLLALLSVNSDTLLFHYLFAASNCIQ
                     GPFIFLSYVVLSKEVRKALKFACSRKPSPDPALTTKSTLTSSYNCPSPYADGRLYQPY
                     GDSAGSLHSASRSGKSQPSYIPFLLREESTLNPGQGPPGLGNPGGLFLEGQDQQHDPD
                     TDSDSDLSLEDDQSGSYASTHSSDSEEEEEEEEAEATFPGEPGWDSLLGPGAERLPLH
                     STPKDGGLGPGKAPWPGDFGIAAKDSGGNGASEERPRENGDALPREGSLGPLPGPSAQ
                     PHKGEQGILKKKCLPTISEKSSLLRLPLEQGTGSSRGSSASEGSRGGPPPRPPPRQSL
                     QEQLNGVMPIAMSIKAGTVDEDSSGSEN"
     misc_feature    907..1209
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(928..933,1096..1098,1102..1104,1195..1197,
                     1201..1206)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1231..1539
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1252..1257,1420..1422,1426..1428,1525..1527,
                     1531..1536)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1564..1857
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1582..1587,1741..1743,1747..1749,1843..1845,
                     1849..1854)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1879..2172
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1900..1905,2059..2061,2065..2067,2158..2160,
                     2164..2169)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2194..2478
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2215..2220,2374..2376,2380..2382,2464..2466,
                     2470..2475)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2500..2787
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2521..2526,2674..2676,2680..2682,2773..2775,
                     2779..2784)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2809..3105
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2830..2835,2992..2994,2998..3000,3091..3093,
                     3097..3102)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3127..3411
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3148..3153,3307..3309,3313..3315,3397..3399,
                     3403..3408)
                     /gene="CELSR2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3478..3714
                     /gene="CELSR2"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4219..4326
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    4351..4452
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    4459..5010
                     /gene="CELSR2"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cd00110"
                     /db_xref="CDD:238058"
     misc_feature    5086..5181
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5206..5655
                     /gene="CELSR2"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cd00110"
                     /db_xref="CDD:238058"
     misc_feature    5737..5841
                     /gene="CELSR2"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    5848..5949
                     /gene="CELSR2"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    6124..6261
                     /gene="CELSR2"
                     /note="Laminin-type epidermal growth factor-like domai;
                     Region: EGF_Lam; smart00180"
                     /db_xref="CDD:214543"
     misc_feature    order(6124..6126,6130..6132,6160..6162,6181..6183,
                     6187..6189,6214..6216)
                     /gene="CELSR2"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    6268..6456
                     /gene="CELSR2"
                     /note="Domain present in hormone receptors; Region: HormR;
                     smart00008"
                     /db_xref="CDD:214468"
     misc_feature    6505..7221
                     /gene="CELSR2"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     Region: GAIN; pfam16489"
                     /db_xref="CDD:465137"
     misc_feature    7297..7458
                     /gene="CELSR2"
                     /note="G-protein-coupled receptor proteolytic site domain;
                     Region: GPS; smart00303"
                     /db_xref="CDD:197639"
     misc_feature    7471..8232
                     /gene="CELSR2"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    7480..7554
                     /gene="CELSR2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320658"
     misc_feature    7579..7644
                     /gene="CELSR2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320658"
     misc_feature    7672..7740
                     /gene="CELSR2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320658"
     misc_feature    7795..7845
                     /gene="CELSR2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320658"
     misc_feature    7900..7971
                     /gene="CELSR2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320658"
     misc_feature    8038..8106
                     /gene="CELSR2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320658"
     misc_feature    8116..8193
                     /gene="CELSR2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320658"
ORIGIN      
        1 cggccggggc cgggccgggg tccgggtgcg cagctccgcg ggagcaggtg ggctatcccg
       61 cgggagcgag gaacactccg aggatctggg ggccggcagg gccaagggcg cgcggggtcc
      121 gcgggcgcag gtggcgagag acgggtgtgc cagtggaggc gcggcgccag cccgtggtgg
      181 tcggtgtgac cggggcgcgg gcccggctta gggaacggtg ggagcccggt ctccggtgag
      241 gcatcaagga gcaggccccc ggggactgac gccctggcct gggcatgagg cgcggcgggg
      301 cgggcaggag cgggaggagg agccgccgcc gccgccgccg ttgacccggc cggccgggaa
      361 gagggagaga tgcggagccc ggcggcccgc gccccacttc caacaccact gccgctgcta
      421 ctgctcctgc tgccgccact actgggagac caggtggggc cctgtcgttc cctggggcct
      481 gggggacgcg gttcttcggg ggcctgcgct cccgtgggct ggctctgtcc agcctcatcc
      541 tcgaacctct ggctctacac cagccgctgc agggatgcgg ggacggaact gactggccat
      601 ttggtgcccc atcatgatgg tctgagggtc tggtgtccag aatccggggc ccacatcccc
      661 ttgccgccag cgcccaaagg ctgcccctgg agctgtcgtc ttctgggcgt tggaggccac
      721 ctttccccac agggcaagct tgccctgccc catgagcacc tgtgcttaaa ggccccacgg
      781 ctgagatgcc agtcctgtaa gctggtgcag accccagggt tcagggcagg ggaaagctca
      841 gcagaagcgt ccatgggtgg acgtcggaag aggaatgtga atacagcccc ccagtttcag
      901 ccccccagct accaggccac agtgcccgag aaccagccag caggtacccc tgtggcatct
      961 ctgcgggcca tcgacccaga tgagggtgag gcaggtcggc ttgagtacac tatggatgcc
     1021 ctcttcgata gccgctccaa ccatttcttc tccctggacc caatcaccgg tgcagtaacc
     1081 acagccgagg agctggatcg tgagaccaag agcacccatg tcttcagagt cacagcgcag
     1141 gatcacggca tgccccgacg cagtgccctg gccacgctca ccatcttggt gactgatacc
     1201 aatgatcatg accctgtttt tgagcagcag gagtacaagg agagcctcag ggagaacctg
     1261 gaggtgggct atgaggtgct caccgtcaga gccacagatg gtgatgcccc tcccaatgcc
     1321 aatattctgt actgcctgct ggaggggcct gggggcagcc cctctgaagt ctttgagatt
     1381 gaccctcgct ctggggtaat acgaacccgt ggccctgtgg atagggaaga ggtggaatcc
     1441 taccagttga cagtggaagc aagtgatcag ggtcgggacc ccggtccacg gagtgccaca
     1501 gcttctgttt tcctgtctgt ggaggatgat aatgacaatg ccccccagtt cagcgagaag
     1561 cgctatgtgg tccaggtgcg ggaggatgtg accccaggag ctccggtact ccgggtcaca
     1621 gcctcggata gagacaaggg cagcaatgcc ctggtgcatt acagcatcat gagtggcaac
     1681 gcgcggggac agttttactt agatgcccag actggggctc tggacgtggt gagccctctt
     1741 gactatgaga cgaccaagga atacacccta cgggttcgag cacaggatgg cggccgcccc
     1801 cctctctcca acgtctccgg cttggtgaca gtgcaggttc tggatatcaa tgacaacgct
     1861 cccatcttcg tcagcacccc cttccaggct actgtcctgg agagtgtccc cttaggctac
     1921 ctggttctcc atgtccaggc catcgatgct gatgctggtg acaatgcccg cctggaatac
     1981 cgccttgcgg gggtcgggca tgacttcccc ttcaccatca acaatggcac aggctggatc
     2041 tccgtggcgg ctgagctgga ccgggaagag gttgatttct acagctttgg agtagaagcc
     2101 cgcgaccatg gcaccccagc actcactgcc tcggccagtg tcagcgtgac catcctggat
     2161 gtcaatgaca ataacccgac ctttacccaa ccagagtaca cggtgcggct caacgaggat
     2221 gcggccgtgg gcaccagcgt ggtgacggtg tcggccgtgg accgtgatgc ccacagtgtc
     2281 atcacctacc agatcaccag cggcaacacc cgaaaccgct tctccatcac cagccagagt
     2341 gggggggggc tggtgtccct cgccctgcca ctggactaca aactggagcg gcagtacgtg
     2401 ctggctgtta ctgcctctga tggcacacga caggacacag cgcaagtggt ggtgaacgtc
     2461 accgacgcta acacccatcg tcccgtattt cagagctctc actacacggt gaatattaac
     2521 gaggaccggc cagcaggcac cacggtggtg ctgatcagtg ccacagatga ggacacaggt
     2581 gagaatgccc gcatcaccta ctttatggag gacagcatcc cccagttccg cattgatgca
     2641 gatacaggtg ctgtcaccac ccaggccgag ctggattatg aggaccaggt gtcctacacc
     2701 ctggctatca ctgcccggga caatggcatt ccccagaagt ctgacaccac ctacctggag
     2761 atcctggtga acgatgtgaa tgacaatgcc cctcagtttc tgcgggactc ctaccagggc
     2821 agtgtctatg aggatgtgcc ccccttcacc agtgtcctgc agatctcggc cactgaccgt
     2881 gattctggcc ttaacggcag ggtcttctac accttccaag gaggcgatga tggaggtggt
     2941 gactttattg tagagtccac gtcaggcatt gtgcgaacac tgcggaggct ggatcgtgaa
     3001 aatgtggccc agtacgcctt gcgggcatat gcagtggaca aggggatgcc tccagctcgc
     3061 acgcccatgg acgtgacggt cgctgtcttg gatgtgaacg acaatccacc tgtttttgag
     3121 caggatgagt ttgatgtgtt tgttgaagag aacagcccca ttgggctggc tgtggctcgc
     3181 gtcacagcca cggaccctga cgaaggcact aatgcccaga tcatgtacca gatcgtggag
     3241 ggcaacatcc ctgaggtctt ccagctggac atcttctctg gggagctgac cgctctggtg
     3301 gacttggact acgaggaccg gcctgaatac atcctggtca tccaggccac gtcggctccc
     3361 ctggtgagcc gggctacagt gcacgtccgc ctgcttgacc gcaatgacaa cccaccggtg
     3421 ctgggcaact ttgagatcct tttcaacaac tatgtcacca accgctcgag cagcttcccc
     3481 gggggtgcca tcggccgggt gcctgcccac gaccctgaca tctccgacag cctgacttac
     3541 agcttcgagc ggggaaacga actcagcctg gtcctgctca acgcgtccac gggcgagctg
     3601 aggctgagtc gggcactgga caacaaccga cctctggagg ccatcatgag cgtgctggtg
     3661 tcagatggcg tgcacagtgt gaccgctcag tgcgcactgc gcgtcaccat cattaccgac
     3721 gagatgctca cgcacagcat cacgctgcgc ctggaggaca tgtcgcctga gcgcttcctg
     3781 tcgcccctcc tgggtctctt catccaggcc gtggccgcca cgctggccac acccccagac
     3841 cacgtggtgg tcttcaacgt gcagcgggac accgacgccc cgggcggcca catcctcaat
     3901 gtgagcctgt cggtgggcca gccgccaggg cccgggggcg ggcctccctt cctgccttct
     3961 gaggacctgc aggagcgcct gtacctcaac cgcagtctgc tcacggccat ctcggcgcag
     4021 cgcgtgctgc ccttcgacga caacatctgc ctgcgcgagc cctgcgagaa ctacatgcgc
     4081 tgcgtgtcgg tgctgcgctt cgactcctcc gcgcccttca tcgcctcctc ctccgtgctc
     4141 ttccggccca ttcacccagt gggggggctg cgctgccgct gcccgcctgg cttcacgggc
     4201 gactactgcg agacggaggt ggacctctgc tactcgcggc cctgcggctc ccacggccgc
     4261 tgccgcagcc gtgagggcgg ctacacctgc ctctgccgcg atggctacac cggtgagcac
     4321 tgtgaggtga gtgcccgctc aggccgttgc accccgggtg tctgcaagaa tgggggcacc
     4381 tgtgtcaacc tgctggtggg cggcttcaag tgcgactgcc catccggaga ctttgagaag
     4441 cccttctgcc aggtgaccac gcgcagcttc cccgcccgct ccttcatcac cttccggggc
     4501 ctacgccagc gcttccactt caccctggcc ctctcgtttg ccaccaagga gcgtgatggg
     4561 ctgctgttgt acaatgggcg cttcaatgag aagcatgact ttgtggccct cgaggtgatc
     4621 caggagcagg tccagctcac cttctctgca ggggagtcga ccaccaccgt gtccccgttc
     4681 gtgtccggag gggtcagtga cggccagtgg cacacagtgc agctgaagta ctacaataag
     4741 ccgctgttgg gtcagacagg gctcccgcag ggcccatccg agcagaaggt ggccgtggtg
     4801 accgtggatg gctgtgacac aggcgcggcc ctgcgcttcg gagctctgct gggcaactac
     4861 tcctgcgctg cccagggcac ccagggtggc agcaagaagt ctctggacct gacagggccc
     4921 ctgctgctgg gcggggtgcc tgacctgcct gagagcttcc ctgtccgaac ccggcacttc
     4981 gtgggctgca tgaggaacct gcaggtggac agccgccatg tcgacatggc tgacttcatt
     5041 gccaacaacg gcaccgtgcc cggctgccct gccaagaaga acgtgtgtga cagcaacact
     5101 tgccacaatg ggggcacctg tgtgaaccag tgggatgcct tcagctgcga gtgccctctg
     5161 ggcttcgggg gcaagagctg tgcccaggaa atggccaacc cgcagcgctt cctgggcagc
     5221 agcctggtgg cctggcatgg cctctcgctg cccatctctc agccctggca cctcagcctc
     5281 atgttccgca cacgccaggc cgacggcgtc ctgctgcagg ctgtcaccag ggggcgcagc
     5341 accatcaccc tgcagcttca ggagggccac gtcgtgctga gcgtggaggg caccggactc
     5401 caggcctcgt ctctccggct ggagccaggc cgggccaatg atggtgactg gcaccatgca
     5461 cagctggcac tgggagccag tgggggcccc ggccacacca tcctgtcctt cgactatggg
     5521 cagcagcggg cagagggcaa cctgggcccc cggctgcatg ggctacacct gagcaacatt
     5581 accgtcgggg gagtgcctgg gccggccagt ggtgtggccc gcggcttccg gggctgtttg
     5641 cagggtgttc gggtaagcga gacgcccgag ggtattagca gtctggatcc cagccgtggg
     5701 gaaagcatca atgtggagcc aggctgtagc ctgccagacc cctgtgactc gaacccatgt
     5761 cctgccaaca gctattgcag tgacgactgg gacagctatt cctgcagctg cgatccaggt
     5821 tactatggtg acaactgtac taacgtgtgt gacctgaacc catgtgagca tcagtccgtg
     5881 tgtacccgaa agcccagtga cccccatggc tatatctgcg agtgtcccga aaattacctt
     5941 gggccatact gtgagaccag gattgaccag ccttgccccc gaggctggtg gggacacccc
     6001 acgtgcggcc catgcaactg tgacgtcagc aaaggcttcg atccggattg caacaagaca
     6061 agcggcgagt gccactgcaa ggagaaccac taccggcccc ctggcagccc cgcctgcctg
     6121 ctgtgtgact gctaccccac gggctctctg tcccgagtct gtgaccctga ggatggccag
     6181 tgtccatgca agccaggtgt cattgggcgc cagtgtgatc gctgtgacaa cccttttgct
     6241 gaggtcacta ccaacggctg tgaagtgaat tatgacagct gcccacgggc catcgaggct
     6301 gggatctggt ggccccgtac ccgcttcggg ctgcctgctg ctgccccctg ccccaaaggc
     6361 tcctttggga ctgctgtgcg ccactgtgac gagcacagag ggtggctccc cccaaacctc
     6421 ttcaactgca catcagtcac cttctcagag ctgaagggct ttgctgagcg gctgcagcga
     6481 aacgagtcag gcctggactc ggggcgctcc cagcggctgg ccctgcttct gcgtaacgct
     6541 acccaacaca cggctggcta cttcggcagt gacgtcaagg tggcctacca gctggccgct
     6601 cggctattgg cccacgagag cacccagcga ggcttcgggc tgtccgccac acaggatgtg
     6661 cacttcaccg agaatctgct gcaggtgggc agcgccctcc tggatgcagc caacaagcgg
     6721 cactgggagc tgatccagca gacagagggt ggcaccgcct ggctgctcca gcactatgag
     6781 gcctacgcca gtgccctggc ccagaacatg cggcacacct acctaagccc cttcaccatc
     6841 gtcacgccca acattgtcat ctctgtagtt cgcctggaca agggaaactt cgctggggcc
     6901 aagctgcccc gctacgaggc gctgagaggg gagcggcccc cggaccttga gacaacggtc
     6961 attctgcctg agtccgtctt cagagaaaca ctccccgtgg tcaggcccgc gggccttgga
     7021 gaggcccagg agccagagga gctggcacgg cgtcagcggc ggcacccgga gctgagtcag
     7081 ggtgaggcgg tggccagtgt catcatctac cgcaccctgg ctgggctgct gccccataac
     7141 tacgacccag acaagcgcag cctgagagtt cccaaacgcc ctgtcatcaa cacgcccgtg
     7201 gtgagcatca gcgtccacga cgacgaggag cttctgcccc gtgctttgga caagccagtc
     7261 acggtgcagt tccggctgct ggagacggag gagcggacga agcccatctg tgtcttctgg
     7321 aaccattcga tcctggtcag tggcacaggt ggctggtcag cccgaggctg cgaagttgtc
     7381 ttccgcaacg agagccacgt cagctgccag tgcaaccaca tgacgagctt cgccgtgctc
     7441 atggacgtgt ccaggcggga gaatggggag atcctgccac tgaagacgct gacctatgtg
     7501 gccctagggg tcaccttggc tgccctactg ctcactttcc tcttcctcac tattctgcgt
     7561 gccctgcgct ccaaccagca cggcatccaa cggaacctga ctgccgccct gggcctagct
     7621 cagctggtct tcctcctggg aatcaaccag gctgacctcc cttttgcctg cacagtcatc
     7681 gccatcctgc tgcacttcct gtacctctgc accttttcct gggctctgct ggaggccttg
     7741 cacctgtacc gggcactcac cgaggtgcgc gacgtcaatg ccggccccat gcgcttctac
     7801 tacatgctag gctggggtgt gcccgccttc atcacaggtc tagccgtggg cctggacccg
     7861 gagggctatg ggaaccctga cttctgctgg ctctccatct acgataggct catctggagt
     7921 tttgctggcc ccgtggcctt tgctgtctcg atgagtgtct tcctgtacat cctggcggcc
     7981 cgggcgtcct gtgctgccca gcggcagggc tttgagaaga aaggccctgt ctcgggcctg
     8041 cggccctcct tcgctgtcct cctgctgctg agcgccacgt ggctactggc actgctgtct
     8101 gtcaacagtg acaccctcct cttccactac ctctttgctg cttccaattg catccagggc
     8161 cccttcatct tcctctccta tgtggtgctt agcaaggagg tccggaaagc actcaagttt
     8221 gcctgtagcc gcaagcccag ccctgaccct gctctgacca ccaagtccac tctgacctcg
     8281 tcctacaact gccccagccc ctatgcagat ggaaggcttt accagcccta tggagactca
     8341 gcaggctctc tgcacagcgc cagccgctcg ggcaagagtc agcccagcta catccccttc
     8401 ttgctgaggg aggagtccac actgaaccct ggccaagggc cccctggcct ggggaaccct
     8461 ggtggcctat tcctggaagg tcaagaccag cagcatgatc cagacacaga ctctgacagt
     8521 gacctgtccc tggaagatga ccagagtggc tcctatgcct ctacccactc atcagatagt
     8581 gaggaggagg aagaggagga agaggcagag gccaccttcc ctggagagcc gggctgggac
     8641 agcctgctgg ggcctggggc ggagagactg cccctgcaca gtacccccaa ggatgggggc
     8701 ctggggcccg ggaaggcccc ctggccagga gactttggga tcgcagcaaa ggacagtggt
     8761 ggcaatgggg cctctgagga gcggccgcgg gagaatggag atgccctgcc tcgggagggg
     8821 tccctgggtc cccttccagg cccttctgcc caacctcaca aaggtgagca gggcatcctt
     8881 aagaagaagt gtctgcccac catcagtgag aagagcagcc tcctacggct acccctggag
     8941 cagggcacag ggtcttcccg gggctcctca gccagcgagg gcagccgggg tgggccccct
     9001 ccccgccctc caccccggca gagcctccag gagcagctga atggggtcat gcccatcgcc
     9061 atgagcatca aggcaggcac ggtggatgag gactcgtcag gctcggagaa ctgaaaaagc
     9121 cctgtccgga gagcgggcag aaggactcag cgcccccaga cccccaaatg ctgcatgaac
     9181 acattctgaa gggaacccat gcccctgggt ggcggccggg ccaccccagc ccctctcctt
     9241 tccctggact ctggccgtgc actgcagccc gggtgtttgc tcagttcgct gacccaaaag
     9301 tgcttcattt ccctgcccgc cccatgctgg ggaaggccag tcatgtgttg agcttctttg
     9361 ctattgtgtg ggtgggacag ggaggaagag gacagatggg gctggcacgg ttgccccgtg
     9421 ctgtctccag cccaggtctc cagtctgggt tccagggtcc actcgccctc ctctgagacc
     9481 agacaaaccc cactgacctg ctgtggcctc tgagacatgt tctattttta tccccttctt
     9541 ggaattggct ctcttcttcg aaggaccagg tccctattcc tctttctccc ccctcaccac
     9601 ccagctccct gcgaagagag agttaatata tattttttat ttatttgctt tttgtgttgg
     9661 gatgggtcca gtcccagggg gtctgatgtg gccatcagtc aggtcgggtg tgtacccagc
     9721 agtcctggcg agggggcctc aggcccttcc ccttgctcca ggctgtcatc tccccacctc
     9781 tccctccctc ctcagttttg ccaactgctg ttcatctgag tcaccattta tgctgagcat
     9841 gtattccaga cttgtcacct attttcctct ggagcaggtg gctagaaaaa gaggctatga
     9901 gtagaaaaag tgttcctatt tctcatttgt aaggctggtc tctggctttt ctgccatgga
     9961 ttctttccct ggcctctccc ctcagcaatt cctgcaaagg gttaaaaact taactgtttt
    10021 ttactactga tgacttgact taaaaaaata caaagatgct ggatgctaac ttgatactaa
    10081 ccatctgatt gtacagtttg attgtaactg taaatatggt agcattttgt gctttgtttt
    10141 ttcagttctc catgccactg aataaaacta gttctctgcg ggctga
//
LOCUS       XM_032652888             843 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A10
            (S100A10), mRNA.
ACCESSION   XM_032652888
VERSION     XM_032652888.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..843
                     /gene="S100A10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 7 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764335"
     CDS             299..592
                     /gene="S100A10"
                     /codon_start=1
                     /product="protein S100-A10"
                     /protein_id="XP_032508779.1"
                     /db_xref="GeneID:116764335"
                     /translation="MPSQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLE
                     NQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK"
     misc_feature    305..577
                     /gene="S100A10"
                     /note="A subgroup of the S-100A10 domain found in proteins
                     similar to S100A10. S100A10 is a member of the S100 family
                     of EF-hand superfamily of calcium-binding proteins. Note
                     that the S-100 hierarchy, to which this S-100A10 group
                     belongs, contains only S-100...; Region: S-100A10;
                     cd05024"
                     /db_xref="CDD:240151"
     misc_feature    order(305..307,311..313,320..325,332..334,347..349,
                     410..415,515..517,524..529,548..550,557..559)
                     /gene="S100A10"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240151"
     misc_feature    order(314..316,326..328,335..337,422..424,431..436,
                     545..547,554..556,569..571)
                     /gene="S100A10"
                     /note="annexin 2 binding sites [active]"
                     /db_xref="CDD:240151"
ORIGIN      
        1 aggctcctcc gcacagcgaa agaagggtgt gtgcgctgcg cccggggtgt cagtgttagg
       61 tgcgggggca ggaagaagag ggaggagaag gggtggggtg agcggaggcc ctgacaccgg
      121 cccaggctcc tcctgcatcc cccgctcccc gcccccactt actaaggcgc ccagcccgcg
      181 gcgctctgct cactggccgc gtgtccccgc cagccgagcg cccccgccag ccgagcaccc
      241 ccgcctgcca agcgtccccg cctcgcctcc tgccacggtt ccaacagacc tcaccaaaat
      301 gccctctcaa atggaacacg ccatggaaac catgatgttc acatttcaca agtttgctgg
      361 ggataaaggc tacttaacga aggaggacct gagagtactc atggaaaagg agttccctgg
      421 atttttggaa aatcaaaaag accctctggc tgtggacaaa ataatgaagg acctggacca
      481 gtgccgagac ggcaaagtgg gcttccagag cttcttttca ctaatcgctg ggctcaccat
      541 cgcgtgcaat gactattttg tagtacacat gaagcagaag ggaaagaagt aggcagcatt
      601 gagcaattac tcccaccctg ataagaattc tcataaaggg tcacttaagg aatctgccct
      661 acagctaccc ctgtataagg atttcctggg cagatgggga cccttagaaa atgtacaaat
      721 aaaatccagc tccaccttga gaagcagaga aagaaaagtc aattaaagtc agataagctt
      781 ttgattttta tattgcttgc atccccttgc cctcaataaa caaattcctt ttttagttct
      841 gaa
//
LOCUS       XM_032652914            4880 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 281 (ZNF281),
            transcript variant X1, mRNA.
ACCESSION   XM_032652914
VERSION     XM_032652914.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4880
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4880
                     /gene="ZNF281"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764343"
     CDS             126..2738
                     /gene="ZNF281"
                     /codon_start=1
                     /product="zinc finger protein 281"
                     /protein_id="XP_032508805.1"
                     /db_xref="GeneID:116764343"
                     /translation="MKVGSAFLSGGGGGAGSGGRAEMEPSFPPGMVMFNHRLPPVASF
                     ARPAGAAAPPPQCVLAAAPAAAPAAEPPPAPAPDVTFKKEPAAPGAAFPAQRTSWGFL
                     QSLVSIKQEKPADPEEPPGAPHPHYGGLFAGADERAPGLGAGDAGGPGVIQDLSVLHP
                     PPPPAPHPRDVLLGRTDDPRGPEEPKPDASVKKAKRPKPESQGIKAKRKPGASSKPSL
                     AGDGEGAVLSPSQKPHICDHCSAAFRSSYHLRRHVLIHTGERPFQCSQCSMGFIQKYL
                     LQRHEKIHSREKPFGCDQCSMKFIQKYHMERHKRTHSGEKPYKCDTCQQYFSRTDRLL
                     KHRRTCGEALAKGAPSAEPGSSSNHSTVGNLAVLSQGSTSSSRRKAKSRSIAVENKEP
                     KAGKANESHMSNSIHMQSYSVEMPTVSSSGGIIGPGIEELQKRVPKLIFKKGGRKSMD
                     KNYLNFVSPLPDIVGQKSLSGKPSGSLGIVSNSSVETISLLQSTSGKQGQISSNYDDA
                     MQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVIQSAGVGVLDSEAPLSLIDSSALNAE
                     IKSCHDKSGIPDEVLQSILDQYSNKSESQKEDPFNITEPRVDLHTSGEHSELVQEENL
                     SPGTQTASNDKASMLQEYSKYLQQAFEKSTNAGFTLGHGFQFVSLSSPLHNHTLFPEK
                     QIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGLYLSALDATHQQLTPSQELD
                     DLIDSQKNLETSSAFQSSSQKLTSQKEQPKNLESSTSFQIPSQELAGQMDPQKDVEPR
                     TTYQIENFAQAFGSQFKSGSRVPMTFITNSNGEVDHRARTSVSDFSGYTNMMSDVSEP
                     CSTRGKTPTSQSYR"
     misc_feature    825..893
                     /gene="ZNF281"
                     /note="C2H2-type zinc finger; Region: zf-C2H2_4;
                     pfam13894"
                     /db_xref="CDD:464025"
     misc_feature    831..893
                     /gene="ZNF281"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(846..848,852..854,858..860,864..869,876..881,
                     888..890,930..932,936..938,948..953,960..965,972..974,
                     1014..1016,1020..1022,1026..1028,1032..1037,1044..1049,
                     1056..1058)
                     /gene="ZNF281"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    867..944
                     /gene="ZNF281"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    915..977
                     /gene="ZNF281"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    987..>1700
                     /gene="ZNF281"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    999..1061
                     /gene="ZNF281"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1035..1112
                     /gene="ZNF281"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1083..1142
                     /gene="ZNF281"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 tccattgtgg agaggacggc gttattttta ttaaccggag cggcggcggc ggcggcggcg
       61 gcggcggctg cggcgcggcg gcggcggcgg cggcggcggc gggaccccca ggcctgctcc
      121 ggggcatgaa agtcggcagc gcgttcctga gcggcggcgg cggcggcgcg ggcagcggcg
      181 ggcgggcgga gatggagccc agcttcccgc cgggcatggt gatgttcaac caccggctgc
      241 ccccggtcgc cagcttcgcg cggccggcgg gcgcggccgc ccctcccccg cagtgcgtgc
      301 tggccgccgc cccggccgcg gccccggccg ccgagccccc cccggcgccc gccccggacg
      361 tgactttcaa gaaggagccg gcggcgcccg gcgcggcctt cccggcgcag aggacctcct
      421 ggggcttcct gcagtcgctg gtcagcatca agcaggagaa gccggcagac cccgaggagc
      481 cgccgggcgc cccccatcct cactacgggg ggctgttcgc gggggccgac gagcgggcgc
      541 cggggctggg cgctggggac gcgggcggcc cgggcgtcat ccaggacctg agcgtcctgc
      601 acccgccgcc gccgcccgcc ccccaccccc gcgacgtgct gctcggccgg actgacgacc
      661 cccgcggccc cgaggagccc aagccggacg cgagcgtcaa gaaggccaag aggccaaagc
      721 cagaatctca gggaatcaaa gccaagagga agccgggcgc atcttccaag ccgtcgctgg
      781 cgggagacgg agaaggcgcc gtcctgtccc caagccagaa acctcacatc tgcgaccact
      841 gcagcgccgc tttccgcagc tcctaccacc tgcggaggca cgtcctcatc cacaccggag
      901 agcgaccctt ccagtgcagc cagtgcagca tgggcttcat ccagaagtac ctgctgcaga
      961 ggcacgagaa gatccacagc cgggagaagc ccttcgggtg tgatcagtgc agcatgaagt
     1021 tcatccagaa gtaccatatg gagagacaca agcggacgca cagtggagag aagccataca
     1081 aatgtgacac ttgccagcag tatttctcaa ggaccgatag gctgttgaag cacaggcgca
     1141 cgtgcggcga agccctggcc aagggggcgc ccagtgcaga gcctgggtca tccagcaacc
     1201 atagcaccgt gggtaacctg gctgtgttgt ctcagggaag tacaagttct tcaaggagaa
     1261 aagcgaagtc gagaagcata gctgttgaaa acaaggagcc caaggctggg aaagcaaatg
     1321 aatcccatat gtcaaacagc atacacatgc agagttactc agtagaaatg cctactgtgt
     1381 cttccagcgg gggcatcatc ggccctggca tagaggagct ccagaagagg gtgccaaaac
     1441 tgatctttaa gaaaggaggc cggaagagca tggataaaaa ctacctgaac ttcgtgtcac
     1501 cgttaccaga catagttgga cagaagtcct tgtctgggaa accgagtggc tcccttggca
     1561 tcgtgtcaaa cagtagcgtg gagaccatta gtcttctgca aagtacaagt ggcaaacaag
     1621 gtcaaataag cagtaattat gacgacgcca tgcagttctc aaagaaaaga agatacctgc
     1681 ccaccgccag cagcaacagt gccttttccg tgaatgtggg acacatggtc tcccagcagt
     1741 ccgtcattca gtcggcgggc gtcggtgttt tggacagtga ggccccgttg tcccttattg
     1801 actcctcggc cctgaatgcg gaaattaagt cttgtcacga caagtcggga attcctgacg
     1861 aggttttaca aagtattttg gatcagtact ccaacaagtc agagagccag aaggaggatc
     1921 ctttcaacat aacagaacca cgagtggatc tgcacacctc aggagaacac tcagaactgg
     1981 ttcaagaaga aaatttgagc ccgggcaccc agactgcttc aaatgacaag gcaagcatgt
     2041 tgcaagaata ctccaaatac ctccaacagg ctttcgaaaa atccacgaat gcaggtttta
     2101 ctctgggaca cggtttccaa tttgtcagtc tgtcttcacc tctccacaac cacactttat
     2161 ttccagaaaa acagatttac actacatctc ctttggagtg tggtttcggc cagtctgtta
     2221 cctcagtgtt gccatcttcg ttgccaaagc ctccttttgg gatgttgttt gggtctcagc
     2281 cgggtcttta tttgtctgct ttggatgcca cacatcagca gttgacacct tcccaggagc
     2341 tggatgacct gatagattct cagaagaatc tagagacttc gtcagccttc cagtcctcat
     2401 ctcagaaact gactagccag aaggaacaac cgaaaaactt agagtcctca acgagctttc
     2461 agatcccatc tcaggagtta gccggccaga tggatcctca gaaggatgta gagcccagaa
     2521 caacgtacca gattgagaac tttgcacagg cgttcggttc tcagttcaag tcgggcagca
     2581 gggtgccaat gacctttatc acgaactcta atggagaagt ggaccataga gcaaggactt
     2641 cagtgtcaga tttctcaggg tatacaaaca tgatgtctga tgttagtgag ccatgtagta
     2701 ccagaggaaa gacccccacc agccagagtt acaggtaagg tcccaagagt gaccaggctg
     2761 gaggtcttct aatgtaattt tgttttattt tgagaacact gccattggaa tgtttctaca
     2821 cgatcctgtt aagaataatg taatgccctt tcaatgcaac ttttcatatt tagtttattt
     2881 tgttagtgtg attttagctc tgtttgtatt atgattttta atcaaaatca atagattaaa
     2941 atagtttgac attcgaagtg acaatgttta gcaatcaaat ttacatgtat agatcgtcag
     3001 ggaatagccc aaaagtttta aatgcaaaaa aaaacaaaca aaaaaaccca caaaaaaacc
     3061 atacaaaaaa aaaaaaaaaa gaaaacaaaa aaaaaaacac aaaaaaaaaa aaacaaaaaa
     3121 aaaatttgtt gctaggatta aggttattct aattgcttta ctctcaggaa agtgtaataa
     3181 cgcatgggaa ttctgtacgt tatcactgta atggaatatc caatttacag atagtatgat
     3241 aatacatttc attacttaag taagggatcg aaaacatttc aaattgctct gtctgggctg
     3301 atacgataca cgtgtcatca tttaagtaag ggatcgaaaa catttcaaat tgctgtctcc
     3361 atctgggctg atccaaaatt ctgagatgtt ggctacctat attttgttgc agcttttaaa
     3421 tgtactctga acttccaaac cacattcatt ccagcctggt agaacaaata ttcttgaatc
     3481 tttgatcaaa gcctggaatg atagctttaa taataggaaa aaaaaaaaaa aaaaaaaaaa
     3541 aggcaccctc tccttatccc aactgtaaca aggctgtgtg actcccatca agagttgatg
     3601 ggaacagtgt tgaagcccaa gtggttggtt ggttgcagta ttagaaccca agttggaatt
     3661 acataattct ttgaaatttg gggtgtgtgt tatttattat acatggccta aaaacactgt
     3721 tctctgtctc tgtgactaca tgtcacccac acttctgggg gtattttgtg ttatttttgt
     3781 tcttaacctg tcctctcaga gctctgggcc ttccctgttc cctcttctct ccgtctggac
     3841 agtttcaatt ttagaatgat tcacatttag gtaatttgtt atgcatttcc tatgccttcc
     3901 ggcatccaaa cagtagaata aacatccacc ctcccccttt tgaaaaacag aacccacaca
     3961 gatgtccatg tataataaag ccccacatgc tcagagctgt ggatattaat aaggtggtaa
     4021 ttccaactgg tgacaaagcc gatgggaggg gtaggagtgg cttatttagt aatgacatca
     4081 gaacctcttt gtgaaattgc agcctgtgta atgtacattt taaaagggtg cgttagtcag
     4141 tattgtacag gggtcttgta aagtcatcca aacttgctat gaacgctaat ttgccatttg
     4201 aagccactgg tagacagtgg ctctgctctc aaccactttt tagccattgt atttttttcc
     4261 tgattatatt tttaatgtac tttgatgttt atgctgatga gttttttatg tacttttggt
     4321 gatgtttcgg tcttacgtac tcttctgacg tgggaaaagt accactggtt gttggcagtc
     4381 ttactgtgtg atccgcctac cacaggcttc catgtataat aaagtaatca atattgtgca
     4441 agtgtaaaac acttccgtta tgaaagcagt gtttggaaaa tgagaaatta tttaaaatgg
     4501 ttacaacata ctagttaatt tcctttcccc actttcctcc cttaagtcta ctttacccgc
     4561 tgaagggtcg cttattgtta ttgcaaggac cttagaaaat gtgtttaatc ctcttaaata
     4621 cactcagtac taaaaagtat gtatttcttc ttttgctaag tgcggcaagt tctgttgggt
     4681 acagagtaca agctgtaatc aaaggatgga gaggaccttt accactgtat ctcttgagct
     4741 gtatgatttt tctccagtgt tttgttttat acaggttttg aatttcttta acttttattg
     4801 tgtgtactga atactgcata tgtactattc tgattgtttg ctctagttta ctaccaataa
     4861 aagacctgtt aatcacaaaa
//
LOCUS       XM_032652920            4882 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 281 (ZNF281),
            transcript variant X2, mRNA.
ACCESSION   XM_032652920
VERSION     XM_032652920.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4882
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4882
                     /gene="ZNF281"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764343"
     CDS             128..2740
                     /gene="ZNF281"
                     /codon_start=1
                     /product="zinc finger protein 281"
                     /protein_id="XP_032508811.1"
                     /db_xref="GeneID:116764343"
                     /translation="MKVGSAFLSGGGGGAGSGGRAEMEPSFPPGMVMFNHRLPPVASF
                     ARPAGAAAPPPQCVLAAAPAAAPAAEPPPAPAPDVTFKKEPAAPGAAFPAQRTSWGFL
                     QSLVSIKQEKPADPEEPPGAPHPHYGGLFAGADERAPGLGAGDAGGPGVIQDLSVLHP
                     PPPPAPHPRDVLLGRTDDPRGPEEPKPDASVKKAKRPKPESQGIKAKRKPGASSKPSL
                     AGDGEGAVLSPSQKPHICDHCSAAFRSSYHLRRHVLIHTGERPFQCSQCSMGFIQKYL
                     LQRHEKIHSREKPFGCDQCSMKFIQKYHMERHKRTHSGEKPYKCDTCQQYFSRTDRLL
                     KHRRTCGEALAKGAPSAEPGSSSNHSTVGNLAVLSQGSTSSSRRKAKSRSIAVENKEP
                     KAGKANESHMSNSIHMQSYSVEMPTVSSSGGIIGPGIEELQKRVPKLIFKKGGRKSMD
                     KNYLNFVSPLPDIVGQKSLSGKPSGSLGIVSNSSVETISLLQSTSGKQGQISSNYDDA
                     MQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVIQSAGVGVLDSEAPLSLIDSSALNAE
                     IKSCHDKSGIPDEVLQSILDQYSNKSESQKEDPFNITEPRVDLHTSGEHSELVQEENL
                     SPGTQTASNDKASMLQEYSKYLQQAFEKSTNAGFTLGHGFQFVSLSSPLHNHTLFPEK
                     QIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGLYLSALDATHQQLTPSQELD
                     DLIDSQKNLETSSAFQSSSQKLTSQKEQPKNLESSTSFQIPSQELAGQMDPQKDVEPR
                     TTYQIENFAQAFGSQFKSGSRVPMTFITNSNGEVDHRARTSVSDFSGYTNMMSDVSEP
                     CSTRGKTPTSQSYR"
     misc_feature    827..895
                     /gene="ZNF281"
                     /note="C2H2-type zinc finger; Region: zf-C2H2_4;
                     pfam13894"
                     /db_xref="CDD:464025"
     misc_feature    833..895
                     /gene="ZNF281"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(848..850,854..856,860..862,866..871,878..883,
                     890..892,932..934,938..940,950..955,962..967,974..976,
                     1016..1018,1022..1024,1028..1030,1034..1039,1046..1051,
                     1058..1060)
                     /gene="ZNF281"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    869..946
                     /gene="ZNF281"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    917..979
                     /gene="ZNF281"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    989..>1702
                     /gene="ZNF281"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1001..1063
                     /gene="ZNF281"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1037..1114
                     /gene="ZNF281"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1085..1144
                     /gene="ZNF281"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 tttaattcca ttgtggagag gacggcgtta tttttattaa ccggagcggc ggcggcggcg
       61 gcggcggcgg cggctgcggc gcggcggcgg cggcggcggc ggcggcggga cccgcctgct
      121 ccggggcatg aaagtcggca gcgcgttcct gagcggcggc ggcggcggcg cgggcagcgg
      181 cgggcgggcg gagatggagc ccagcttccc gccgggcatg gtgatgttca accaccggct
      241 gcccccggtc gccagcttcg cgcggccggc gggcgcggcc gcccctcccc cgcagtgcgt
      301 gctggccgcc gccccggccg cggccccggc cgccgagccc cccccggcgc ccgccccgga
      361 cgtgactttc aagaaggagc cggcggcgcc cggcgcggcc ttcccggcgc agaggacctc
      421 ctggggcttc ctgcagtcgc tggtcagcat caagcaggag aagccggcag accccgagga
      481 gccgccgggc gccccccatc ctcactacgg ggggctgttc gcgggggccg acgagcgggc
      541 gccggggctg ggcgctgggg acgcgggcgg cccgggcgtc atccaggacc tgagcgtcct
      601 gcacccgccg ccgccgcccg ccccccaccc ccgcgacgtg ctgctcggcc ggactgacga
      661 cccccgcggc cccgaggagc ccaagccgga cgcgagcgtc aagaaggcca agaggccaaa
      721 gccagaatct cagggaatca aagccaagag gaagccgggc gcatcttcca agccgtcgct
      781 ggcgggagac ggagaaggcg ccgtcctgtc cccaagccag aaacctcaca tctgcgacca
      841 ctgcagcgcc gctttccgca gctcctacca cctgcggagg cacgtcctca tccacaccgg
      901 agagcgaccc ttccagtgca gccagtgcag catgggcttc atccagaagt acctgctgca
      961 gaggcacgag aagatccaca gccgggagaa gcccttcggg tgtgatcagt gcagcatgaa
     1021 gttcatccag aagtaccata tggagagaca caagcggacg cacagtggag agaagccata
     1081 caaatgtgac acttgccagc agtatttctc aaggaccgat aggctgttga agcacaggcg
     1141 cacgtgcggc gaagccctgg ccaagggggc gcccagtgca gagcctgggt catccagcaa
     1201 ccatagcacc gtgggtaacc tggctgtgtt gtctcaggga agtacaagtt cttcaaggag
     1261 aaaagcgaag tcgagaagca tagctgttga aaacaaggag cccaaggctg ggaaagcaaa
     1321 tgaatcccat atgtcaaaca gcatacacat gcagagttac tcagtagaaa tgcctactgt
     1381 gtcttccagc gggggcatca tcggccctgg catagaggag ctccagaaga gggtgccaaa
     1441 actgatcttt aagaaaggag gccggaagag catggataaa aactacctga acttcgtgtc
     1501 accgttacca gacatagttg gacagaagtc cttgtctggg aaaccgagtg gctcccttgg
     1561 catcgtgtca aacagtagcg tggagaccat tagtcttctg caaagtacaa gtggcaaaca
     1621 aggtcaaata agcagtaatt atgacgacgc catgcagttc tcaaagaaaa gaagatacct
     1681 gcccaccgcc agcagcaaca gtgccttttc cgtgaatgtg ggacacatgg tctcccagca
     1741 gtccgtcatt cagtcggcgg gcgtcggtgt tttggacagt gaggccccgt tgtcccttat
     1801 tgactcctcg gccctgaatg cggaaattaa gtcttgtcac gacaagtcgg gaattcctga
     1861 cgaggtttta caaagtattt tggatcagta ctccaacaag tcagagagcc agaaggagga
     1921 tcctttcaac ataacagaac cacgagtgga tctgcacacc tcaggagaac actcagaact
     1981 ggttcaagaa gaaaatttga gcccgggcac ccagactgct tcaaatgaca aggcaagcat
     2041 gttgcaagaa tactccaaat acctccaaca ggctttcgaa aaatccacga atgcaggttt
     2101 tactctggga cacggtttcc aatttgtcag tctgtcttca cctctccaca accacacttt
     2161 atttccagaa aaacagattt acactacatc tcctttggag tgtggtttcg gccagtctgt
     2221 tacctcagtg ttgccatctt cgttgccaaa gcctcctttt gggatgttgt ttgggtctca
     2281 gccgggtctt tatttgtctg ctttggatgc cacacatcag cagttgacac cttcccagga
     2341 gctggatgac ctgatagatt ctcagaagaa tctagagact tcgtcagcct tccagtcctc
     2401 atctcagaaa ctgactagcc agaaggaaca accgaaaaac ttagagtcct caacgagctt
     2461 tcagatccca tctcaggagt tagccggcca gatggatcct cagaaggatg tagagcccag
     2521 aacaacgtac cagattgaga actttgcaca ggcgttcggt tctcagttca agtcgggcag
     2581 cagggtgcca atgaccttta tcacgaactc taatggagaa gtggaccata gagcaaggac
     2641 ttcagtgtca gatttctcag ggtatacaaa catgatgtct gatgttagtg agccatgtag
     2701 taccagagga aagaccccca ccagccagag ttacaggtaa ggtcccaaga gtgaccaggc
     2761 tggaggtctt ctaatgtaat tttgttttat tttgagaaca ctgccattgg aatgtttcta
     2821 cacgatcctg ttaagaataa tgtaatgccc tttcaatgca acttttcata tttagtttat
     2881 tttgttagtg tgattttagc tctgtttgta ttatgatttt taatcaaaat caatagatta
     2941 aaatagtttg acattcgaag tgacaatgtt tagcaatcaa atttacatgt atagatcgtc
     3001 agggaatagc ccaaaagttt taaatgcaaa aaaaaacaaa caaaaaaacc cacaaaaaaa
     3061 ccatacaaaa aaaaaaaaaa aagaaaacaa aaaaaaaaac acaaaaaaaa aaaaacaaaa
     3121 aaaaaatttg ttgctaggat taaggttatt ctaattgctt tactctcagg aaagtgtaat
     3181 aacgcatggg aattctgtac gttatcactg taatggaata tccaatttac agatagtatg
     3241 ataatacatt tcattactta agtaagggat cgaaaacatt tcaaattgct ctgtctgggc
     3301 tgatacgata cacgtgtcat catttaagta agggatcgaa aacatttcaa attgctgtct
     3361 ccatctgggc tgatccaaaa ttctgagatg ttggctacct atattttgtt gcagctttta
     3421 aatgtactct gaacttccaa accacattca ttccagcctg gtagaacaaa tattcttgaa
     3481 tctttgatca aagcctggaa tgatagcttt aataatagga aaaaaaaaaa aaaaaaaaaa
     3541 aaaggcaccc tctccttatc ccaactgtaa caaggctgtg tgactcccat caagagttga
     3601 tgggaacagt gttgaagccc aagtggttgg ttggttgcag tattagaacc caagttggaa
     3661 ttacataatt ctttgaaatt tggggtgtgt gttatttatt atacatggcc taaaaacact
     3721 gttctctgtc tctgtgacta catgtcaccc acacttctgg gggtattttg tgttattttt
     3781 gttcttaacc tgtcctctca gagctctggg ccttccctgt tccctcttct ctccgtctgg
     3841 acagtttcaa ttttagaatg attcacattt aggtaatttg ttatgcattt cctatgcctt
     3901 ccggcatcca aacagtagaa taaacatcca ccctccccct tttgaaaaac agaacccaca
     3961 cagatgtcca tgtataataa agccccacat gctcagagct gtggatatta ataaggtggt
     4021 aattccaact ggtgacaaag ccgatgggag gggtaggagt ggcttattta gtaatgacat
     4081 cagaacctct ttgtgaaatt gcagcctgtg taatgtacat tttaaaaggg tgcgttagtc
     4141 agtattgtac aggggtcttg taaagtcatc caaacttgct atgaacgcta atttgccatt
     4201 tgaagccact ggtagacagt ggctctgctc tcaaccactt tttagccatt gtattttttt
     4261 cctgattata tttttaatgt actttgatgt ttatgctgat gagtttttta tgtacttttg
     4321 gtgatgtttc ggtcttacgt actcttctga cgtgggaaaa gtaccactgg ttgttggcag
     4381 tcttactgtg tgatccgcct accacaggct tccatgtata ataaagtaat caatattgtg
     4441 caagtgtaaa acacttccgt tatgaaagca gtgtttggaa aatgagaaat tatttaaaat
     4501 ggttacaaca tactagttaa tttcctttcc ccactttcct cccttaagtc tactttaccc
     4561 gctgaagggt cgcttattgt tattgcaagg accttagaaa atgtgtttaa tcctcttaaa
     4621 tacactcagt actaaaaagt atgtatttct tcttttgcta agtgcggcaa gttctgttgg
     4681 gtacagagta caagctgtaa tcaaaggatg gagaggacct ttaccactgt atctcttgag
     4741 ctgtatgatt tttctccagt gttttgtttt atacaggttt tgaatttctt taacttttat
     4801 tgtgtgtact gaatactgca tatgtactat tctgattgtt tgctctagtt tactaccaat
     4861 aaaagacctg ttaatcacaa aa
//
LOCUS       XM_032652926            3124 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCAR3 adaptor protein, NSP family member
            (BCAR3), transcript variant X1, mRNA.
ACCESSION   XM_032652926
VERSION     XM_032652926.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3124
                     /gene="BCAR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 5 long SRA reads, 22
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764359"
     CDS             187..2664
                     /gene="BCAR3"
                     /codon_start=1
                     /product="breast cancer anti-estrogen resistance protein 3
                     isoform X1"
                     /protein_id="XP_032508817.1"
                     /db_xref="GeneID:116764359"
                     /translation="MAAGKFASLPRNMPVNHQFPLASSMDLLSSKSPLAEHRTDAYQD
                     VSIHGTLPRKKKGPPPVRSCDNFSHMGTLPHSKSPRQPSPLSQDVIQEHPPQDWKGKT
                     FTFRDQHLLDPTLEYVKFSKERHVMDRTQERLKKELEEELLLSSEDLRSHAWYHGRIP
                     RQVSENLVQRDGDFLVRDSLSSPGNFVLTCQWKNLPQHFKIRRTVLRLSEAYSRVQYQ
                     FEMESFDSIPGLVRCYVGNRRPISQQSGAIIFQPINRRVPLRCLEEQYSTSPSQAQEG
                     SLVEGRPDVAKRLSLTMGSPQAREQSLPRGNLLRNREKSGSQPACLDHMQDRRALSLK
                     AHQSESYLPIGGKLPPQSPGVGTRPCPNSPVFRTGSEPTLSPAVVRRVSSDARAGGAL
                     RGSDSQLCPKPPPKPCKAPMLKAPRSPSTWLNSEANYCELNPALAAGCDGAARPPFCA
                     QDSYVDLLTAKQNGGPAARNSDTSYLILDDDDGAKPWEPLPTQRDKGQEDEGTFVTPL
                     LETASSFKPNDLESKLLPPENKPLETAMLKRAKELFTNNDPKVIAQHMLSMDCKVARI
                     LEVSEEMRKNMGMSSGLELITLPYGHQLRLDIIERHNTMAIGIAVDILGCTGTLEDRA
                     ATLNRIIQVAVELKDSMGDLYSFSAIMKALEMPQITRLEKTWTALRHQYTQTAILYEK
                     QLKPFSKILHEGRESTCVPPNNISVPLLMPLVTLMEREAVTFEGTDMWEKNDESCEIM
                     LNHLATARLMAEAADSYRMNAERILAGFQPDEEMSEIFKTEFQMRLLWGSKGAQVNQT
                     ERYEKFNQILTALSRKLEPPPIKQAEL"
     misc_feature    628..1032
                     /gene="BCAR3"
                     /note="Src homology 2 (SH2) domain in the Breast Cancer
                     Anti-estrogen Resistance protein 3; Region: SH2_BCAR3;
                     cd10337"
                     /db_xref="CDD:198200"
     misc_feature    order(667..669,715..717,778..780,784..786)
                     /gene="BCAR3"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198200"
     misc_feature    order(781..783,886..888)
                     /gene="BCAR3"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198200"
     misc_feature    1816..2643
                     /gene="BCAR3"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases; Region: RasGEF; smart00147"
                     /db_xref="CDD:214539"
     misc_feature    order(1921..1929,1969..1974,1978..1986,1990..1995,
                     2002..2007,2014..2016,2119..2121,2128..2133,2137..2145,
                     2149..2160,2164..2169,2218..2220,2233..2241,2248..2250,
                     2311..2319,2326..2334,2338..2346,2350..2361,2401..2403,
                     2413..2415,2536..2538,2545..2550)
                     /gene="BCAR3"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
ORIGIN      
        1 tgggcgggag cgagagccgc aaacgccggg cgcacaggcg agccgcgcgc ggtcttctcg
       61 gccggcgcgc cccaccgatc atgagcggct cctgctccgg gagcagccgc ggcgcagggc
      121 agacagtgca gcgcctctga gccccagccg gagagcccgg gcgccgcgcg gggagagttg
      181 agaatcatgg ctgcgggaaa gtttgcaagc cttcctagaa acatgccagt gaatcaccag
      241 ttccccctgg cctcatccat ggacctcctg agcagcaagt cacctctcgc tgagcatcgc
      301 acagatgcct atcaagacgt gtctatacac ggcacccttc cacggaagaa gaaaggccct
      361 cctcccgtaa ggtcctgtga taacttcagt cacatgggga ccctccccca ttccaaatcc
      421 ccacggcagc cctcacctct gagccaagac gtcatccagg agcacccacc gcaagactgg
      481 aaaggcaaaa ccttcacctt cagggatcag catcttctgg acccaactct ggaatatgtg
      541 aagttctcca aggagaggca cgtcatggac aggacccagg agaggctgaa gaaggagctg
      601 gaagaggagc tgctgctgag cagcgaggac ttgcgcagcc acgcctggta ccacggccgc
      661 atcccccgac aggtgtcaga aaacctcgtg cagcgagacg gtgacttcct ggttcgtgat
      721 tctctgtcca gccccgggaa ctttgtcctg acctgccagt ggaagaacct ccctcagcac
      781 ttcaagatcc gccggacggt cctgcggctc agtgaggcct acagccgagt gcagtaccag
      841 tttgagatgg agagcttcga ctccatcccc ggcctggtgc gctgctatgt gggcaaccgg
      901 cggcccatct cccagcagag cggagccatc atcttccagc ccatcaacag gagggtgccc
      961 ctgcggtgcc tggaggagca gtacagcacc tcccccagcc aggcccagga gggcagcctc
     1021 gtcgagggaa ggccagacgt ggccaagagg ctgagcctca ccatgggcag cccccaggcc
     1081 cgagagcaga gcttgcccag gggcaacctc ctcagaaata gagagaagag tggtagccag
     1141 ccagcctgcc tggatcacat gcaggacaga agagccttgt ccctcaaagc ccaccagtcg
     1201 gaaagttacc tgccaattgg tggtaagctg ccccctcagt ccccaggtgt gggcacaaga
     1261 ccctgcccaa actcaccggt ttttaggaca ggcagtgagc ccaccctgag cccagcagtg
     1321 gttcggaggg tctcctcgga cgctagggca gggggggcgc tgaggggctc agacagccag
     1381 ctatgcccca aaccgccccc caagccctgc aaagcgccca tgctcaaggc tccccggtct
     1441 ccgtccacct ggctcaactc agaggccaac tactgcgaac tgaacccagc cttggccgca
     1501 ggctgcgatg gggcagcacg gccgcccttc tgtgcccagg acagctacgt ggacctgctg
     1561 accgccaagc agaacggcgg gccggctgcc cggaactctg acaccagcta cttgatcctt
     1621 gatgacgatg acggggcaaa gccttgggag ccgctgccga ctcagaggga caaggggcag
     1681 gaggacgagg gtacattcgt gacacccctc ctggagactg cctcctcctt caagcccaac
     1741 gaccttgagt cgaagctcct tcctcctgag aacaagcccc tggaaaccgc gatgctgaag
     1801 cgtgcgaaag aactgttcac caacaacgac cccaaggtca tcgcccagca catgctgagc
     1861 atggactgca aggtcgcgag gatacttgaa gtctctgaag agatgaggaa gaacatgggc
     1921 atgagctcag ggctggagct catcaccttg ccttatggcc accagctgcg cctggacatc
     1981 atcgaaagac acaacacgat ggccatcggc attgcagtgg acattctggg ctgcacgggc
     2041 actttggagg acagagcagc caccctcaat aggatcatcc aggtggcagt ggagctgaaa
     2101 gactccatgg gggacctcta ttctttctcg gccatcatga aggccttgga aatgccgcag
     2161 atcacaaggt tagaaaaaac gtggactgcc ctgcggcacc agtacacaca aaccgccatc
     2221 ctctatgaga aacagctgaa gccttttagc aaaatcctgc acgaaggcag agagtctacg
     2281 tgtgttcccc caaacaatat atcagtccca ctgctgatgc ctcttgtgac cttaatggag
     2341 cgcgaggctg tcacttttga aggaactgac atgtgggaaa aaaacgacga aagctgtgag
     2401 attatgctga accatttggc aacagcccga ctcatggcag aagctgccga cagctaccgg
     2461 atgaatgctg agaggatcct ggcaggtttt caaccagatg aagaaatgag tgaaatcttc
     2521 aagactgaat tccaaatgag attgctatgg ggcagcaaag gtgcacaagt caatcagaca
     2581 gagagatatg agaaattcaa ccagatttta actgccctct cacgtaaatt ggaacctcct
     2641 cctataaagc aggcagagct ttgataactg actctccaga ggaccttagg atataatttc
     2701 aagcttatcc agtttcttct ttgagaaagc ttatcctttg ataaagtaag gtaataatgt
     2761 gcgaatctga cgacatacaa gcttttagta tccgcaggat attaaacatg taaattgcac
     2821 agagcacact tatttatgaa ttgtttaaaa ttactactga ctttaaaatg aatgataatt
     2881 tattaaggta actattgcta atgctgatca acaaatttaa gtgaagaccc agctacattg
     2941 gctggttgct ttctattacc gaggtatttg accattttag ttttaataat tccatgtcag
     3001 ataagtgtaa atagaagagt ttaaaagcat gaaacatttc agaaggtatc agttgtatga
     3061 tattctttaa ctaaatatga aaaatgtaaa tagtcatatg aaaatatatc tttttgtgaa
     3121 acag
//
LOCUS       XM_032652934            3003 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCAR3 adaptor protein, NSP family member
            (BCAR3), transcript variant X2, mRNA.
ACCESSION   XM_032652934
VERSION     XM_032652934.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3003
                     /gene="BCAR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 5 long SRA reads, 22
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116764359"
     CDS             66..2543
                     /gene="BCAR3"
                     /codon_start=1
                     /product="breast cancer anti-estrogen resistance protein 3
                     isoform X1"
                     /protein_id="XP_032508825.1"
                     /db_xref="GeneID:116764359"
                     /translation="MAAGKFASLPRNMPVNHQFPLASSMDLLSSKSPLAEHRTDAYQD
                     VSIHGTLPRKKKGPPPVRSCDNFSHMGTLPHSKSPRQPSPLSQDVIQEHPPQDWKGKT
                     FTFRDQHLLDPTLEYVKFSKERHVMDRTQERLKKELEEELLLSSEDLRSHAWYHGRIP
                     RQVSENLVQRDGDFLVRDSLSSPGNFVLTCQWKNLPQHFKIRRTVLRLSEAYSRVQYQ
                     FEMESFDSIPGLVRCYVGNRRPISQQSGAIIFQPINRRVPLRCLEEQYSTSPSQAQEG
                     SLVEGRPDVAKRLSLTMGSPQAREQSLPRGNLLRNREKSGSQPACLDHMQDRRALSLK
                     AHQSESYLPIGGKLPPQSPGVGTRPCPNSPVFRTGSEPTLSPAVVRRVSSDARAGGAL
                     RGSDSQLCPKPPPKPCKAPMLKAPRSPSTWLNSEANYCELNPALAAGCDGAARPPFCA
                     QDSYVDLLTAKQNGGPAARNSDTSYLILDDDDGAKPWEPLPTQRDKGQEDEGTFVTPL
                     LETASSFKPNDLESKLLPPENKPLETAMLKRAKELFTNNDPKVIAQHMLSMDCKVARI
                     LEVSEEMRKNMGMSSGLELITLPYGHQLRLDIIERHNTMAIGIAVDILGCTGTLEDRA
                     ATLNRIIQVAVELKDSMGDLYSFSAIMKALEMPQITRLEKTWTALRHQYTQTAILYEK
                     QLKPFSKILHEGRESTCVPPNNISVPLLMPLVTLMEREAVTFEGTDMWEKNDESCEIM
                     LNHLATARLMAEAADSYRMNAERILAGFQPDEEMSEIFKTEFQMRLLWGSKGAQVNQT
                     ERYEKFNQILTALSRKLEPPPIKQAEL"
     misc_feature    507..911
                     /gene="BCAR3"
                     /note="Src homology 2 (SH2) domain in the Breast Cancer
                     Anti-estrogen Resistance protein 3; Region: SH2_BCAR3;
                     cd10337"
                     /db_xref="CDD:198200"
     misc_feature    order(546..548,594..596,657..659,663..665)
                     /gene="BCAR3"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198200"
     misc_feature    order(660..662,765..767)
                     /gene="BCAR3"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198200"
     misc_feature    1695..2522
                     /gene="BCAR3"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases; Region: RasGEF; smart00147"
                     /db_xref="CDD:214539"
     misc_feature    order(1800..1808,1848..1853,1857..1865,1869..1874,
                     1881..1886,1893..1895,1998..2000,2007..2012,2016..2024,
                     2028..2039,2043..2048,2097..2099,2112..2120,2127..2129,
                     2190..2198,2205..2213,2217..2225,2229..2240,2280..2282,
                     2292..2294,2415..2417,2424..2429)
                     /gene="BCAR3"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
ORIGIN      
        1 ggaggtacga agagagccaa actctaaaat ccgggcagag gagggcaagg cgagagttga
       61 gaatcatggc tgcgggaaag tttgcaagcc ttcctagaaa catgccagtg aatcaccagt
      121 tccccctggc ctcatccatg gacctcctga gcagcaagtc acctctcgct gagcatcgca
      181 cagatgccta tcaagacgtg tctatacacg gcacccttcc acggaagaag aaaggccctc
      241 ctcccgtaag gtcctgtgat aacttcagtc acatggggac cctcccccat tccaaatccc
      301 cacggcagcc ctcacctctg agccaagacg tcatccagga gcacccaccg caagactgga
      361 aaggcaaaac cttcaccttc agggatcagc atcttctgga cccaactctg gaatatgtga
      421 agttctccaa ggagaggcac gtcatggaca ggacccagga gaggctgaag aaggagctgg
      481 aagaggagct gctgctgagc agcgaggact tgcgcagcca cgcctggtac cacggccgca
      541 tcccccgaca ggtgtcagaa aacctcgtgc agcgagacgg tgacttcctg gttcgtgatt
      601 ctctgtccag ccccgggaac tttgtcctga cctgccagtg gaagaacctc cctcagcact
      661 tcaagatccg ccggacggtc ctgcggctca gtgaggccta cagccgagtg cagtaccagt
      721 ttgagatgga gagcttcgac tccatccccg gcctggtgcg ctgctatgtg ggcaaccggc
      781 ggcccatctc ccagcagagc ggagccatca tcttccagcc catcaacagg agggtgcccc
      841 tgcggtgcct ggaggagcag tacagcacct cccccagcca ggcccaggag ggcagcctcg
      901 tcgagggaag gccagacgtg gccaagaggc tgagcctcac catgggcagc ccccaggccc
      961 gagagcagag cttgcccagg ggcaacctcc tcagaaatag agagaagagt ggtagccagc
     1021 cagcctgcct ggatcacatg caggacagaa gagccttgtc cctcaaagcc caccagtcgg
     1081 aaagttacct gccaattggt ggtaagctgc cccctcagtc cccaggtgtg ggcacaagac
     1141 cctgcccaaa ctcaccggtt tttaggacag gcagtgagcc caccctgagc ccagcagtgg
     1201 ttcggagggt ctcctcggac gctagggcag ggggggcgct gaggggctca gacagccagc
     1261 tatgccccaa accgcccccc aagccctgca aagcgcccat gctcaaggct ccccggtctc
     1321 cgtccacctg gctcaactca gaggccaact actgcgaact gaacccagcc ttggccgcag
     1381 gctgcgatgg ggcagcacgg ccgcccttct gtgcccagga cagctacgtg gacctgctga
     1441 ccgccaagca gaacggcggg ccggctgccc ggaactctga caccagctac ttgatccttg
     1501 atgacgatga cggggcaaag ccttgggagc cgctgccgac tcagagggac aaggggcagg
     1561 aggacgaggg tacattcgtg acacccctcc tggagactgc ctcctccttc aagcccaacg
     1621 accttgagtc gaagctcctt cctcctgaga acaagcccct ggaaaccgcg atgctgaagc
     1681 gtgcgaaaga actgttcacc aacaacgacc ccaaggtcat cgcccagcac atgctgagca
     1741 tggactgcaa ggtcgcgagg atacttgaag tctctgaaga gatgaggaag aacatgggca
     1801 tgagctcagg gctggagctc atcaccttgc cttatggcca ccagctgcgc ctggacatca
     1861 tcgaaagaca caacacgatg gccatcggca ttgcagtgga cattctgggc tgcacgggca
     1921 ctttggagga cagagcagcc accctcaata ggatcatcca ggtggcagtg gagctgaaag
     1981 actccatggg ggacctctat tctttctcgg ccatcatgaa ggccttggaa atgccgcaga
     2041 tcacaaggtt agaaaaaacg tggactgccc tgcggcacca gtacacacaa accgccatcc
     2101 tctatgagaa acagctgaag ccttttagca aaatcctgca cgaaggcaga gagtctacgt
     2161 gtgttccccc aaacaatata tcagtcccac tgctgatgcc tcttgtgacc ttaatggagc
     2221 gcgaggctgt cacttttgaa ggaactgaca tgtgggaaaa aaacgacgaa agctgtgaga
     2281 ttatgctgaa ccatttggca acagcccgac tcatggcaga agctgccgac agctaccgga
     2341 tgaatgctga gaggatcctg gcaggttttc aaccagatga agaaatgagt gaaatcttca
     2401 agactgaatt ccaaatgaga ttgctatggg gcagcaaagg tgcacaagtc aatcagacag
     2461 agagatatga gaaattcaac cagattttaa ctgccctctc acgtaaattg gaacctcctc
     2521 ctataaagca ggcagagctt tgataactga ctctccagag gaccttagga tataatttca
     2581 agcttatcca gtttcttctt tgagaaagct tatcctttga taaagtaagg taataatgtg
     2641 cgaatctgac gacatacaag cttttagtat ccgcaggata ttaaacatgt aaattgcaca
     2701 gagcacactt atttatgaat tgtttaaaat tactactgac tttaaaatga atgataattt
     2761 attaaggtaa ctattgctaa tgctgatcaa caaatttaag tgaagaccca gctacattgg
     2821 ctggttgctt tctattaccg aggtatttga ccattttagt tttaataatt ccatgtcaga
     2881 taagtgtaaa tagaagagtt taaaagcatg aaacatttca gaaggtatca gttgtatgat
     2941 attctttaac taaatatgaa aaatgtaaat agtcatatga aaatatatct ttttgtgaaa
     3001 cag
//
LOCUS       XM_032652943            2808 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCAR3 adaptor protein, NSP family member
            (BCAR3), transcript variant X3, mRNA.
ACCESSION   XM_032652943
VERSION     XM_032652943.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2808
                     /gene="BCAR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 15
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764359"
     CDS             147..2351
                     /gene="BCAR3"
                     /codon_start=1
                     /product="breast cancer anti-estrogen resistance protein 3
                     isoform X2"
                     /protein_id="XP_032508834.1"
                     /db_xref="GeneID:116764359"
                     /translation="MPKECNAFHALSAALCCFYHRKSFLGVKFSKERHVMDRTQERLK
                     KELEEELLLSSEDLRSHAWYHGRIPRQVSENLVQRDGDFLVRDSLSSPGNFVLTCQWK
                     NLPQHFKIRRTVLRLSEAYSRVQYQFEMESFDSIPGLVRCYVGNRRPISQQSGAIIFQ
                     PINRRVPLRCLEEQYSTSPSQAQEGSLVEGRPDVAKRLSLTMGSPQAREQSLPRGNLL
                     RNREKSGSQPACLDHMQDRRALSLKAHQSESYLPIGGKLPPQSPGVGTRPCPNSPVFR
                     TGSEPTLSPAVVRRVSSDARAGGALRGSDSQLCPKPPPKPCKAPMLKAPRSPSTWLNS
                     EANYCELNPALAAGCDGAARPPFCAQDSYVDLLTAKQNGGPAARNSDTSYLILDDDDG
                     AKPWEPLPTQRDKGQEDEGTFVTPLLETASSFKPNDLESKLLPPENKPLETAMLKRAK
                     ELFTNNDPKVIAQHMLSMDCKVARILEVSEEMRKNMGMSSGLELITLPYGHQLRLDII
                     ERHNTMAIGIAVDILGCTGTLEDRAATLNRIIQVAVELKDSMGDLYSFSAIMKALEMP
                     QITRLEKTWTALRHQYTQTAILYEKQLKPFSKILHEGRESTCVPPNNISVPLLMPLVT
                     LMEREAVTFEGTDMWEKNDESCEIMLNHLATARLMAEAADSYRMNAERILAGFQPDEE
                     MSEIFKTEFQMRLLWGSKGAQVNQTERYEKFNQILTALSRKLEPPPIKQAEL"
     misc_feature    315..719
                     /gene="BCAR3"
                     /note="Src homology 2 (SH2) domain in the Breast Cancer
                     Anti-estrogen Resistance protein 3; Region: SH2_BCAR3;
                     cd10337"
                     /db_xref="CDD:198200"
     misc_feature    order(354..356,402..404,465..467,471..473)
                     /gene="BCAR3"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198200"
     misc_feature    order(468..470,573..575)
                     /gene="BCAR3"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198200"
     misc_feature    1503..2330
                     /gene="BCAR3"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases; Region: RasGEF; smart00147"
                     /db_xref="CDD:214539"
     misc_feature    order(1608..1616,1656..1661,1665..1673,1677..1682,
                     1689..1694,1701..1703,1806..1808,1815..1820,1824..1832,
                     1836..1847,1851..1856,1905..1907,1920..1928,1935..1937,
                     1998..2006,2013..2021,2025..2033,2037..2048,2088..2090,
                     2100..2102,2223..2225,2232..2237)
                     /gene="BCAR3"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
ORIGIN      
        1 gccggggaga aggagcctct cactgccctg cggcccgcgg gctggagcag cacagctgct
       61 gcagcgggac tggagctctc acgcctcaag ccccctctcc tttaacccta aagaaagtgt
      121 gtggtccagg gactgaagac tgaaagatgc ctaaggaatg caatgctttc cacgccctct
      181 cggctgctct gtgctgcttc tatcaccgca agtctttcct tggagtaaag ttctccaagg
      241 agaggcacgt catggacagg acccaggaga ggctgaagaa ggagctggaa gaggagctgc
      301 tgctgagcag cgaggacttg cgcagccacg cctggtacca cggccgcatc ccccgacagg
      361 tgtcagaaaa cctcgtgcag cgagacggtg acttcctggt tcgtgattct ctgtccagcc
      421 ccgggaactt tgtcctgacc tgccagtgga agaacctccc tcagcacttc aagatccgcc
      481 ggacggtcct gcggctcagt gaggcctaca gccgagtgca gtaccagttt gagatggaga
      541 gcttcgactc catccccggc ctggtgcgct gctatgtggg caaccggcgg cccatctccc
      601 agcagagcgg agccatcatc ttccagccca tcaacaggag ggtgcccctg cggtgcctgg
      661 aggagcagta cagcacctcc cccagccagg cccaggaggg cagcctcgtc gagggaaggc
      721 cagacgtggc caagaggctg agcctcacca tgggcagccc ccaggcccga gagcagagct
      781 tgcccagggg caacctcctc agaaatagag agaagagtgg tagccagcca gcctgcctgg
      841 atcacatgca ggacagaaga gccttgtccc tcaaagccca ccagtcggaa agttacctgc
      901 caattggtgg taagctgccc cctcagtccc caggtgtggg cacaagaccc tgcccaaact
      961 caccggtttt taggacaggc agtgagccca ccctgagccc agcagtggtt cggagggtct
     1021 cctcggacgc tagggcaggg ggggcgctga ggggctcaga cagccagcta tgccccaaac
     1081 cgccccccaa gccctgcaaa gcgcccatgc tcaaggctcc ccggtctccg tccacctggc
     1141 tcaactcaga ggccaactac tgcgaactga acccagcctt ggccgcaggc tgcgatgggg
     1201 cagcacggcc gcccttctgt gcccaggaca gctacgtgga cctgctgacc gccaagcaga
     1261 acggcgggcc ggctgcccgg aactctgaca ccagctactt gatccttgat gacgatgacg
     1321 gggcaaagcc ttgggagccg ctgccgactc agagggacaa ggggcaggag gacgagggta
     1381 cattcgtgac acccctcctg gagactgcct cctccttcaa gcccaacgac cttgagtcga
     1441 agctccttcc tcctgagaac aagcccctgg aaaccgcgat gctgaagcgt gcgaaagaac
     1501 tgttcaccaa caacgacccc aaggtcatcg cccagcacat gctgagcatg gactgcaagg
     1561 tcgcgaggat acttgaagtc tctgaagaga tgaggaagaa catgggcatg agctcagggc
     1621 tggagctcat caccttgcct tatggccacc agctgcgcct ggacatcatc gaaagacaca
     1681 acacgatggc catcggcatt gcagtggaca ttctgggctg cacgggcact ttggaggaca
     1741 gagcagccac cctcaatagg atcatccagg tggcagtgga gctgaaagac tccatggggg
     1801 acctctattc tttctcggcc atcatgaagg ccttggaaat gccgcagatc acaaggttag
     1861 aaaaaacgtg gactgccctg cggcaccagt acacacaaac cgccatcctc tatgagaaac
     1921 agctgaagcc ttttagcaaa atcctgcacg aaggcagaga gtctacgtgt gttcccccaa
     1981 acaatatatc agtcccactg ctgatgcctc ttgtgacctt aatggagcgc gaggctgtca
     2041 cttttgaagg aactgacatg tgggaaaaaa acgacgaaag ctgtgagatt atgctgaacc
     2101 atttggcaac agcccgactc atggcagaag ctgccgacag ctaccggatg aatgctgaga
     2161 ggatcctggc aggttttcaa ccagatgaag aaatgagtga aatcttcaag actgaattcc
     2221 aaatgagatt gctatggggc agcaaaggtg cacaagtcaa tcagacagag agatatgaga
     2281 aattcaacca gattttaact gccctctcac gtaaattgga acctcctcct ataaagcagg
     2341 cagagctttg ataactgact ctccagagga ccttaggata taatttcaag cttatccagt
     2401 ttcttctttg agaaagctta tcctttgata aagtaaggta ataatgtgcg aatctgacga
     2461 catacaagct tttagtatcc gcaggatatt aaacatgtaa attgcacaga gcacacttat
     2521 ttatgaattg tttaaaatta ctactgactt taaaatgaat gataatttat taaggtaact
     2581 attgctaatg ctgatcaaca aatttaagtg aagacccagc tacattggct ggttgctttc
     2641 tattaccgag gtatttgacc attttagttt taataattcc atgtcagata agtgtaaata
     2701 gaagagttta aaagcatgaa acatttcaga aggtatcagt tgtatgatat tctttaacta
     2761 aatatgaaaa atgtaaatag tcatatgaaa atatatcttt ttgtgaaa
//
LOCUS       XM_032652952            2857 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCAR3 adaptor protein, NSP family member
            (BCAR3), transcript variant X4, mRNA.
ACCESSION   XM_032652952
VERSION     XM_032652952.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2857
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2857
                     /gene="BCAR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 14 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764359"
     CDS             301..2400
                     /gene="BCAR3"
                     /codon_start=1
                     /product="breast cancer anti-estrogen resistance protein 3
                     isoform X3"
                     /protein_id="XP_032508843.1"
                     /db_xref="GeneID:116764359"
                     /translation="MDRTQERLKKELEEELLLSSEDLRSHAWYHGRIPRQVSENLVQR
                     DGDFLVRDSLSSPGNFVLTCQWKNLPQHFKIRRTVLRLSEAYSRVQYQFEMESFDSIP
                     GLVRCYVGNRRPISQQSGAIIFQPINRRVPLRCLEEQYSTSPSQAQEGSLVEGRPDVA
                     KRLSLTMGSPQAREQSLPRGNLLRNREKSGSQPACLDHMQDRRALSLKAHQSESYLPI
                     GGKLPPQSPGVGTRPCPNSPVFRTGSEPTLSPAVVRRVSSDARAGGALRGSDSQLCPK
                     PPPKPCKAPMLKAPRSPSTWLNSEANYCELNPALAAGCDGAARPPFCAQDSYVDLLTA
                     KQNGGPAARNSDTSYLILDDDDGAKPWEPLPTQRDKGQEDEGTFVTPLLETASSFKPN
                     DLESKLLPPENKPLETAMLKRAKELFTNNDPKVIAQHMLSMDCKVARILEVSEEMRKN
                     MGMSSGLELITLPYGHQLRLDIIERHNTMAIGIAVDILGCTGTLEDRAATLNRIIQVA
                     VELKDSMGDLYSFSAIMKALEMPQITRLEKTWTALRHQYTQTAILYEKQLKPFSKILH
                     EGRESTCVPPNNISVPLLMPLVTLMEREAVTFEGTDMWEKNDESCEIMLNHLATARLM
                     AEAADSYRMNAERILAGFQPDEEMSEIFKTEFQMRLLWGSKGAQVNQTERYEKFNQIL
                     TALSRKLEPPPIKQAEL"
     misc_feature    364..768
                     /gene="BCAR3"
                     /note="Src homology 2 (SH2) domain in the Breast Cancer
                     Anti-estrogen Resistance protein 3; Region: SH2_BCAR3;
                     cd10337"
                     /db_xref="CDD:198200"
     misc_feature    order(403..405,451..453,514..516,520..522)
                     /gene="BCAR3"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198200"
     misc_feature    order(517..519,622..624)
                     /gene="BCAR3"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198200"
     misc_feature    1552..2379
                     /gene="BCAR3"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases; Region: RasGEF; smart00147"
                     /db_xref="CDD:214539"
     misc_feature    order(1657..1665,1705..1710,1714..1722,1726..1731,
                     1738..1743,1750..1752,1855..1857,1864..1869,1873..1881,
                     1885..1896,1900..1905,1954..1956,1969..1977,1984..1986,
                     2047..2055,2062..2070,2074..2082,2086..2097,2137..2139,
                     2149..2151,2272..2274,2281..2286)
                     /gene="BCAR3"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
ORIGIN      
        1 aggaattggc tgctgaagtg aaagaagcag gagtctgaga agcaaccagg ccttgggatc
       61 tctggtagcc agggagggaa tcgtgtcctc atccacagtc taccctgggc tgtaggagga
      121 aagatccccc aagttgaggg aaataataac aaggatctca cggtctgagg ctctgaaagg
      181 gaaacgcatt tcaggacaag tgacatcaac aagctgccca cagttcaaag gaggaacagg
      241 gatcagcatc ttctggaccc aactctggaa tatgtgaagt tctccaagga gaggcacgtc
      301 atggacagga cccaggagag gctgaagaag gagctggaag aggagctgct gctgagcagc
      361 gaggacttgc gcagccacgc ctggtaccac ggccgcatcc cccgacaggt gtcagaaaac
      421 ctcgtgcagc gagacggtga cttcctggtt cgtgattctc tgtccagccc cgggaacttt
      481 gtcctgacct gccagtggaa gaacctccct cagcacttca agatccgccg gacggtcctg
      541 cggctcagtg aggcctacag ccgagtgcag taccagtttg agatggagag cttcgactcc
      601 atccccggcc tggtgcgctg ctatgtgggc aaccggcggc ccatctccca gcagagcgga
      661 gccatcatct tccagcccat caacaggagg gtgcccctgc ggtgcctgga ggagcagtac
      721 agcacctccc ccagccaggc ccaggagggc agcctcgtcg agggaaggcc agacgtggcc
      781 aagaggctga gcctcaccat gggcagcccc caggcccgag agcagagctt gcccaggggc
      841 aacctcctca gaaatagaga gaagagtggt agccagccag cctgcctgga tcacatgcag
      901 gacagaagag ccttgtccct caaagcccac cagtcggaaa gttacctgcc aattggtggt
      961 aagctgcccc ctcagtcccc aggtgtgggc acaagaccct gcccaaactc accggttttt
     1021 aggacaggca gtgagcccac cctgagccca gcagtggttc ggagggtctc ctcggacgct
     1081 agggcagggg gggcgctgag gggctcagac agccagctat gccccaaacc gccccccaag
     1141 ccctgcaaag cgcccatgct caaggctccc cggtctccgt ccacctggct caactcagag
     1201 gccaactact gcgaactgaa cccagccttg gccgcaggct gcgatggggc agcacggccg
     1261 cccttctgtg cccaggacag ctacgtggac ctgctgaccg ccaagcagaa cggcgggccg
     1321 gctgcccgga actctgacac cagctacttg atccttgatg acgatgacgg ggcaaagcct
     1381 tgggagccgc tgccgactca gagggacaag gggcaggagg acgagggtac attcgtgaca
     1441 cccctcctgg agactgcctc ctccttcaag cccaacgacc ttgagtcgaa gctccttcct
     1501 cctgagaaca agcccctgga aaccgcgatg ctgaagcgtg cgaaagaact gttcaccaac
     1561 aacgacccca aggtcatcgc ccagcacatg ctgagcatgg actgcaaggt cgcgaggata
     1621 cttgaagtct ctgaagagat gaggaagaac atgggcatga gctcagggct ggagctcatc
     1681 accttgcctt atggccacca gctgcgcctg gacatcatcg aaagacacaa cacgatggcc
     1741 atcggcattg cagtggacat tctgggctgc acgggcactt tggaggacag agcagccacc
     1801 ctcaatagga tcatccaggt ggcagtggag ctgaaagact ccatggggga cctctattct
     1861 ttctcggcca tcatgaaggc cttggaaatg ccgcagatca caaggttaga aaaaacgtgg
     1921 actgccctgc ggcaccagta cacacaaacc gccatcctct atgagaaaca gctgaagcct
     1981 tttagcaaaa tcctgcacga aggcagagag tctacgtgtg ttcccccaaa caatatatca
     2041 gtcccactgc tgatgcctct tgtgacctta atggagcgcg aggctgtcac ttttgaagga
     2101 actgacatgt gggaaaaaaa cgacgaaagc tgtgagatta tgctgaacca tttggcaaca
     2161 gcccgactca tggcagaagc tgccgacagc taccggatga atgctgagag gatcctggca
     2221 ggttttcaac cagatgaaga aatgagtgaa atcttcaaga ctgaattcca aatgagattg
     2281 ctatggggca gcaaaggtgc acaagtcaat cagacagaga gatatgagaa attcaaccag
     2341 attttaactg ccctctcacg taaattggaa cctcctccta taaagcaggc agagctttga
     2401 taactgactc tccagaggac cttaggatat aatttcaagc ttatccagtt tcttctttga
     2461 gaaagcttat cctttgataa agtaaggtaa taatgtgcga atctgacgac atacaagctt
     2521 ttagtatccg caggatatta aacatgtaaa ttgcacagag cacacttatt tatgaattgt
     2581 ttaaaattac tactgacttt aaaatgaatg ataatttatt aaggtaacta ttgctaatgc
     2641 tgatcaacaa atttaagtga agacccagct acattggctg gttgctttct attaccgagg
     2701 tatttgacca ttttagtttt aataattcca tgtcagataa gtgtaaatag aagagtttaa
     2761 aagcatgaaa catttcagaa ggtatcagtt gtatgatatt ctttaactaa atatgaaaaa
     2821 tgtaaatagt catatgaaaa tatatctttt tgtgaaa
//
LOCUS       XM_032652958            2536 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCAR3 adaptor protein, NSP family member
            (BCAR3), transcript variant X5, mRNA.
ACCESSION   XM_032652958
VERSION     XM_032652958.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2536
                     /gene="BCAR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764359"
     CDS             262..2079
                     /gene="BCAR3"
                     /codon_start=1
                     /product="breast cancer anti-estrogen resistance protein 3
                     isoform X4"
                     /protein_id="XP_032508849.1"
                     /db_xref="GeneID:116764359"
                     /translation="MESFDSIPGLVRCYVGNRRPISQQSGAIIFQPINRRVPLRCLEE
                     QYSTSPSQAQEGSLVEGRPDVAKRLSLTMGSPQAREQSLPRGNLLRNREKSGSQPACL
                     DHMQDRRALSLKAHQSESYLPIGGKLPPQSPGVGTRPCPNSPVFRTGSEPTLSPAVVR
                     RVSSDARAGGALRGSDSQLCPKPPPKPCKAPMLKAPRSPSTWLNSEANYCELNPALAA
                     GCDGAARPPFCAQDSYVDLLTAKQNGGPAARNSDTSYLILDDDDGAKPWEPLPTQRDK
                     GQEDEGTFVTPLLETASSFKPNDLESKLLPPENKPLETAMLKRAKELFTNNDPKVIAQ
                     HMLSMDCKVARILEVSEEMRKNMGMSSGLELITLPYGHQLRLDIIERHNTMAIGIAVD
                     ILGCTGTLEDRAATLNRIIQVAVELKDSMGDLYSFSAIMKALEMPQITRLEKTWTALR
                     HQYTQTAILYEKQLKPFSKILHEGRESTCVPPNNISVPLLMPLVTLMEREAVTFEGTD
                     MWEKNDESCEIMLNHLATARLMAEAADSYRMNAERILAGFQPDEEMSEIFKTEFQMRL
                     LWGSKGAQVNQTERYEKFNQILTALSRKLEPPPIKQAEL"
     misc_feature    <262..447
                     /gene="BCAR3"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    1231..2058
                     /gene="BCAR3"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases; Region: RasGEF; smart00147"
                     /db_xref="CDD:214539"
     misc_feature    order(1336..1344,1384..1389,1393..1401,1405..1410,
                     1417..1422,1429..1431,1534..1536,1543..1548,1552..1560,
                     1564..1575,1579..1584,1633..1635,1648..1656,1663..1665,
                     1726..1734,1741..1749,1753..1761,1765..1776,1816..1818,
                     1828..1830,1951..1953,1960..1965)
                     /gene="BCAR3"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
ORIGIN      
        1 aattaaactc ttacctgtaa ttctcccttc tggagatgac cactatgaac atttcgatat
       61 aaatcctgcc agacttttcc aaatcaagtg tcagaaaacc tcgtgcagcg agacggtgac
      121 ttcctggttc gtgattctct gtccagcccc gggaactttg tcctgacctg ccagtggaag
      181 aacctccctc agcacttcaa gatccgccgg acggtcctgc ggctcagtga ggcctacagc
      241 cgagtgcagt accagtttga gatggagagc ttcgactcca tccccggcct ggtgcgctgc
      301 tatgtgggca accggcggcc catctcccag cagagcggag ccatcatctt ccagcccatc
      361 aacaggaggg tgcccctgcg gtgcctggag gagcagtaca gcacctcccc cagccaggcc
      421 caggagggca gcctcgtcga gggaaggcca gacgtggcca agaggctgag cctcaccatg
      481 ggcagccccc aggcccgaga gcagagcttg cccaggggca acctcctcag aaatagagag
      541 aagagtggta gccagccagc ctgcctggat cacatgcagg acagaagagc cttgtccctc
      601 aaagcccacc agtcggaaag ttacctgcca attggtggta agctgccccc tcagtcccca
      661 ggtgtgggca caagaccctg cccaaactca ccggttttta ggacaggcag tgagcccacc
      721 ctgagcccag cagtggttcg gagggtctcc tcggacgcta gggcaggggg ggcgctgagg
      781 ggctcagaca gccagctatg ccccaaaccg ccccccaagc cctgcaaagc gcccatgctc
      841 aaggctcccc ggtctccgtc cacctggctc aactcagagg ccaactactg cgaactgaac
      901 ccagccttgg ccgcaggctg cgatggggca gcacggccgc ccttctgtgc ccaggacagc
      961 tacgtggacc tgctgaccgc caagcagaac ggcgggccgg ctgcccggaa ctctgacacc
     1021 agctacttga tccttgatga cgatgacggg gcaaagcctt gggagccgct gccgactcag
     1081 agggacaagg ggcaggagga cgagggtaca ttcgtgacac ccctcctgga gactgcctcc
     1141 tccttcaagc ccaacgacct tgagtcgaag ctccttcctc ctgagaacaa gcccctggaa
     1201 accgcgatgc tgaagcgtgc gaaagaactg ttcaccaaca acgaccccaa ggtcatcgcc
     1261 cagcacatgc tgagcatgga ctgcaaggtc gcgaggatac ttgaagtctc tgaagagatg
     1321 aggaagaaca tgggcatgag ctcagggctg gagctcatca ccttgcctta tggccaccag
     1381 ctgcgcctgg acatcatcga aagacacaac acgatggcca tcggcattgc agtggacatt
     1441 ctgggctgca cgggcacttt ggaggacaga gcagccaccc tcaataggat catccaggtg
     1501 gcagtggagc tgaaagactc catgggggac ctctattctt tctcggccat catgaaggcc
     1561 ttggaaatgc cgcagatcac aaggttagaa aaaacgtgga ctgccctgcg gcaccagtac
     1621 acacaaaccg ccatcctcta tgagaaacag ctgaagcctt ttagcaaaat cctgcacgaa
     1681 ggcagagagt ctacgtgtgt tcccccaaac aatatatcag tcccactgct gatgcctctt
     1741 gtgaccttaa tggagcgcga ggctgtcact tttgaaggaa ctgacatgtg ggaaaaaaac
     1801 gacgaaagct gtgagattat gctgaaccat ttggcaacag cccgactcat ggcagaagct
     1861 gccgacagct accggatgaa tgctgagagg atcctggcag gttttcaacc agatgaagaa
     1921 atgagtgaaa tcttcaagac tgaattccaa atgagattgc tatggggcag caaaggtgca
     1981 caagtcaatc agacagagag atatgagaaa ttcaaccaga ttttaactgc cctctcacgt
     2041 aaattggaac ctcctcctat aaagcaggca gagctttgat aactgactct ccagaggacc
     2101 ttaggatata atttcaagct tatccagttt cttctttgag aaagcttatc ctttgataaa
     2161 gtaaggtaat aatgtgcgaa tctgacgaca tacaagcttt tagtatccgc aggatattaa
     2221 acatgtaaat tgcacagagc acacttattt atgaattgtt taaaattact actgacttta
     2281 aaatgaatga taatttatta aggtaactat tgctaatgct gatcaacaaa tttaagtgaa
     2341 gacccagcta cattggctgg ttgctttcta ttaccgaggt atttgaccat tttagtttta
     2401 ataattccat gtcagataag tgtaaataga agagtttaaa agcatgaaac atttcagaag
     2461 gtatcagttg tatgatattc tttaactaaa tatgaaaaat gtaaatagtc atatgaaaat
     2521 atatcttttt gtgaaa
//
LOCUS       XM_032652968            2186 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCAR3 adaptor protein, NSP family member
            (BCAR3), transcript variant X6, mRNA.
ACCESSION   XM_032652968
VERSION     XM_032652968.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2186
                     /gene="BCAR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764359"
     CDS             224..1729
                     /gene="BCAR3"
                     /codon_start=1
                     /product="breast cancer anti-estrogen resistance protein 3
                     isoform X5"
                     /protein_id="XP_032508859.1"
                     /db_xref="GeneID:116764359"
                     /translation="MQDRRALSLKAHQSESYLPIGGKLPPQSPGVGTRPCPNSPVFRT
                     GSEPTLSPAVVRRVSSDARAGGALRGSDSQLCPKPPPKPCKAPMLKAPRSPSTWLNSE
                     ANYCELNPALAAGCDGAARPPFCAQDSYVDLLTAKQNGGPAARNSDTSYLILDDDDGA
                     KPWEPLPTQRDKGQEDEGTFVTPLLETASSFKPNDLESKLLPPENKPLETAMLKRAKE
                     LFTNNDPKVIAQHMLSMDCKVARILEVSEEMRKNMGMSSGLELITLPYGHQLRLDIIE
                     RHNTMAIGIAVDILGCTGTLEDRAATLNRIIQVAVELKDSMGDLYSFSAIMKALEMPQ
                     ITRLEKTWTALRHQYTQTAILYEKQLKPFSKILHEGRESTCVPPNNISVPLLMPLVTL
                     MEREAVTFEGTDMWEKNDESCEIMLNHLATARLMAEAADSYRMNAERILAGFQPDEEM
                     SEIFKTEFQMRLLWGSKGAQVNQTERYEKFNQILTALSRKLEPPPIKQAEL"
     misc_feature    881..1708
                     /gene="BCAR3"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases; Region: RasGEF; smart00147"
                     /db_xref="CDD:214539"
     misc_feature    order(986..994,1034..1039,1043..1051,1055..1060,
                     1067..1072,1079..1081,1184..1186,1193..1198,1202..1210,
                     1214..1225,1229..1234,1283..1285,1298..1306,1313..1315,
                     1376..1384,1391..1399,1403..1411,1415..1426,1466..1468,
                     1478..1480,1601..1603,1610..1615)
                     /gene="BCAR3"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
ORIGIN      
        1 tgatggggcc ctggtgtccg accgaccgct ggcggtgatc actgcttaaa tatcgcctcg
       61 ctgaagctac tgccttttgg aatttgccct ctgccctgct ttatctctga ggggttgctg
      121 gaatttctct gttgctggaa gtttggggtg gtttgtttta tttctttggt gcttgcaaag
      181 aaatagagag aagagtggta gccagccagc ctgcctggat cacatgcagg acagaagagc
      241 cttgtccctc aaagcccacc agtcggaaag ttacctgcca attggtggta agctgccccc
      301 tcagtcccca ggtgtgggca caagaccctg cccaaactca ccggttttta ggacaggcag
      361 tgagcccacc ctgagcccag cagtggttcg gagggtctcc tcggacgcta gggcaggggg
      421 ggcgctgagg ggctcagaca gccagctatg ccccaaaccg ccccccaagc cctgcaaagc
      481 gcccatgctc aaggctcccc ggtctccgtc cacctggctc aactcagagg ccaactactg
      541 cgaactgaac ccagccttgg ccgcaggctg cgatggggca gcacggccgc ccttctgtgc
      601 ccaggacagc tacgtggacc tgctgaccgc caagcagaac ggcgggccgg ctgcccggaa
      661 ctctgacacc agctacttga tccttgatga cgatgacggg gcaaagcctt gggagccgct
      721 gccgactcag agggacaagg ggcaggagga cgagggtaca ttcgtgacac ccctcctgga
      781 gactgcctcc tccttcaagc ccaacgacct tgagtcgaag ctccttcctc ctgagaacaa
      841 gcccctggaa accgcgatgc tgaagcgtgc gaaagaactg ttcaccaaca acgaccccaa
      901 ggtcatcgcc cagcacatgc tgagcatgga ctgcaaggtc gcgaggatac ttgaagtctc
      961 tgaagagatg aggaagaaca tgggcatgag ctcagggctg gagctcatca ccttgcctta
     1021 tggccaccag ctgcgcctgg acatcatcga aagacacaac acgatggcca tcggcattgc
     1081 agtggacatt ctgggctgca cgggcacttt ggaggacaga gcagccaccc tcaataggat
     1141 catccaggtg gcagtggagc tgaaagactc catgggggac ctctattctt tctcggccat
     1201 catgaaggcc ttggaaatgc cgcagatcac aaggttagaa aaaacgtgga ctgccctgcg
     1261 gcaccagtac acacaaaccg ccatcctcta tgagaaacag ctgaagcctt ttagcaaaat
     1321 cctgcacgaa ggcagagagt ctacgtgtgt tcccccaaac aatatatcag tcccactgct
     1381 gatgcctctt gtgaccttaa tggagcgcga ggctgtcact tttgaaggaa ctgacatgtg
     1441 ggaaaaaaac gacgaaagct gtgagattat gctgaaccat ttggcaacag cccgactcat
     1501 ggcagaagct gccgacagct accggatgaa tgctgagagg atcctggcag gttttcaacc
     1561 agatgaagaa atgagtgaaa tcttcaagac tgaattccaa atgagattgc tatggggcag
     1621 caaaggtgca caagtcaatc agacagagag atatgagaaa ttcaaccaga ttttaactgc
     1681 cctctcacgt aaattggaac ctcctcctat aaagcaggca gagctttgat aactgactct
     1741 ccagaggacc ttaggatata atttcaagct tatccagttt cttctttgag aaagcttatc
     1801 ctttgataaa gtaaggtaat aatgtgcgaa tctgacgaca tacaagcttt tagtatccgc
     1861 aggatattaa acatgtaaat tgcacagagc acacttattt atgaattgtt taaaattact
     1921 actgacttta aaatgaatga taatttatta aggtaactat tgctaatgct gatcaacaaa
     1981 tttaagtgaa gacccagcta cattggctgg ttgctttcta ttaccgaggt atttgaccat
     2041 tttagtttta ataattccat gtcagataag tgtaaataga agagtttaaa agcatgaaac
     2101 atttcagaag gtatcagttg tatgatattc tttaactaaa tatgaaaaat gtaaatagtc
     2161 atatgaaaat atatcttttt gtgaaa
//
LOCUS       XM_032652979            7890 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spectrin alpha, erythrocytic 1 (SPTA1),
            transcript variant X1, mRNA.
ACCESSION   XM_032652979
VERSION     XM_032652979.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7890
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7890
                     /gene="SPTA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764384"
     CDS             276..7529
                     /gene="SPTA1"
                     /codon_start=1
                     /product="spectrin alpha chain, erythrocytic 1 isoform X1"
                     /protein_id="XP_032508870.1"
                     /db_xref="GeneID:116764384"
                     /translation="MESGGPKVLETAEEIQERRQEVLTRYRRFKELVAERGQKLEDSY
                     YYQVFIRDADDLEKWILEKIKIAGDKSYEDPTNIQGKYQKHESFEAEVQAKSRVIPEL
                     EETRKIRFPEGHFAHEDTKVLLEELSHLWDLLLELTQEKSTLLLRALKLQQYLQECAD
                     ILEWIGDKEAIVTSVELGEDWERTEVLHKKFEDFQADLAVRKERLNGVNQYANECAEE
                     KHPELPLIQSKQEEVNAAWERLHGLALQRQKKLSSAADLQRFKRDVTEAIQWIKEKEP
                     QVTSEDYGKDLVNSEALFHSHKTLERNLAVMNDKVKELCAKADKLKLSHPSDAAQIQQ
                     MKEDLVSNWGHIRTLATSRYEKLQASYRYQRFLSDYDELSGWMKEKTALINADELPTD
                     VTGGEALLDRHQQHKHEIDSYDDRFQSANETGQALLDASHEASDEVMDKMAVLTSHWD
                     ALLELWDKRWQQYEQCLELHLFYRDSEQVDSWMSRQEAFLENEDLGNSLGSVEALLQK
                     HDDFEEAFTAQEEKITTLDKTATKLIDNDHYDSENIAAIRDGLLARQNALRERAATRR
                     RLLEDSLLLQQLYQDSDDLKNWINKKKKLADDEDYKDTQNLKSQVQKQQVFEEELAAN
                     EIQLNNIQKTGQEMIESNHYASESVDARLSEVAKLWTELLEATAQKGTQLYEANKQLQ
                     FENNAEDLKHWLEEVEWQARSEDYGKGLADIQNLLRKHGLLESAMAARQDQVDTLTDL
                     AAYIEELGHPNAGDVRARQESLVSRFEDLKKQLANRKNKLIDLLLLHQICRDTEDEEA
                     WIQETEPSAASTYLGKDLIASKNLLNRHQVIQANIANHEPRIQVITERGNKMVEEGHF
                     AAEDVASRVKSLNENMESLQARAARRQNDLEANVQFQQYLADLHEAEAWIREREPIVD
                     NTNYGADEEAAGALLKKHEAFLVDLKAFGNSMQALRDQAEACQQQQAAPVEEAAREER
                     VVALYDFQARSPREVTMKKDDILTLLSSINKDWWKVEADDHQGFVPAVYVRKLARDEF
                     PMLPQRRREEPGNITQRQEQIENQYLSLLDRAEERRRHLLQRYNEFLLAYEAGDMLDW
                     IREKKAENSGVELDDVWELQKKFDEFQMDLKTNEPRLRDINKVADDLQFEELLTPEGA
                     QIQQELNARWGSLQRLAEEQRQLLGSAHAVQMFHREADDTKEQIEKKCQALSAADPGS
                     DLFSVQALQRQHEGFERDLIPLEEKVAVLGETADRLSESHPDATDDLQRQRLELNQAW
                     DDLLGLTEERKETLQEDLKFFLFLSQARDQQNWLSGIGGMVSSQELAEDLTGTEIMIE
                     RHQEHLAEMEAEAPTFQALEDFGTDLISSGHRASPKIEEELQAVKLERDELEKAWKQR
                     KKMLDQCLELQFFRGNCDQAESWMVVRENYLRSDDKGSLDSLEALMKKRDDLDKAITA
                     QENKITELELFAEQLIADDHYAQEEISARRQRVLDRWKALKEQLIAERTKLGDYADLK
                     QFYHDLKDQEEWISEMLPIACDESYKDPTNIQRKYLKHKTFENEVYGRAEQVKGVITL
                     GNTLIERRACDGNEETMKGQVEELEKNWDYLFERTIDKGQKLNEASRQQRFNTGIRDF
                     EFWLSEAETLLSMKDHARDLASAGNLLKKHQLLETEMLARKDALKDLNTLAADLISSG
                     TFNTDQIVEKRDNVNERFLNVQKLAAEHHEKLKEAYALFQFFQDLDNEEFWIEEKLVR
                     VRSQDYGRDLQGVQNLLKKHKRLEGELVTHEPIIQNVLDMAERLGDKAAVGREEIQER
                     LNQFVQHWDQLKELTKARGIRLGESLEYLEFMENAEEEEAWISEKEAMVTQGDSGDTL
                     AATQSLLKKLEALENDFAVHEIRVQNVYAQGEDILSKEESQHKEKVSTKIEALKEKTP
                     SLAKAMAAWKLQLEDDYDFQQFNWKADVVEAWIAEKETSLKTNGNGADLAAFLTLLAK
                     QDTLHASLQSFQQERLSEITDLKNQLVAAEHSQTEAIKERHAALLRLWEQLLEASEAH
                     RQELLEKQLPLQKAEDLFMEFAHKASAFNNWCENAEEDLSEPVHCVSLDAIQRLKKDH
                     EDFLASLARAQGDFNYLLELDQQIKALNVSSSPYTWLTVEVLERIWNHLSDIVKEREQ
                     ELEKEESRQVKNFEMCQEFEQNASAFLDWIVQTRFLIWTSISRDYFLDGSLLKETGTL
                     ESQLEANKRKQKEIQAMKRKLTKIEDLGENLEEALVLDIKYSTIGLAQQWDQLYQLGM
                     RRQHSLEQQIQARDITGLSEETLQEFETAFRHFDENLTGRLSHKDFRSCLRGLNYYLP
                     MVEEGEPEPKFEKFLDAVDPGRKGYISQTDYTDFLIVKESENIKSSDELEDAFQALAE
                     GKAYITKEDMKQALTPEQVSFCASHMQQYMDPRGRSQPAGYDYVGFISSYFGK"
     misc_feature    402..419
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    411..716
                     /gene="SPTA1"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    723..1358
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    1035..1052
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    1359..1994
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    1671..1688
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    1992..2297
                     /gene="SPTA1"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    2310..2939
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2622..2639
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2946..3797
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    3192..3347
                     /gene="SPTA1"
                     /note="Src homology 3 domain of Alpha Spectrin; Region:
                     SH3_Alpha_Spectrin; cd11808"
                     /db_xref="CDD:212742"
     misc_feature    order(3204..3206,3210..3212,3219..3221,3285..3290,
                     3327..3329,3333..3338)
                     /gene="SPTA1"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212742"
     misc_feature    3489..3506
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    3804..4433
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4110..4127
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    4434..5066
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4743..4760
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5070..5705
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    5382..5399
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5745..6341
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    6021..6038
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    6372..7049
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    6684..6701
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    7092..7274
                     /gene="SPTA1"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     Region: EFh; cl08302"
                     /db_xref="CDD:415501"
     misc_feature    order(7119..7121,7125..7127,7131..7133,7152..7154,
                     7248..7250,7254..7256,7260..7262)
                     /gene="SPTA1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238008"
     misc_feature    7317..7523
                     /gene="SPTA1"
                     /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen;
                     pfam08726"
                     /db_xref="CDD:430177"
ORIGIN      
        1 tagctggcgg gattctggcc caagtgaagg gctacttttt ttctttgtct tgccacatat
       61 gtaacgtttc tctcatctct atctgaatta gactagacaa ctacatgtga attgtttctc
      121 tttctctccc tttgtctctc tgtctctctc tctctctctc tctgtgtgtc ttttggatac
      181 attttatttt gacaggttct tgacctttag gaaaagcgta acactttcca aaggaaaccg
      241 atcagcaaga attgtttctt gattcttaag aggctatgga gagtggtggg ccaaaggtgc
      301 tggaaacagc agaagagatc caggagagac gtcaggaggt gttgacccgg taccggaggt
      361 tcaaggaact ggttgctgag aggggtcaga agcttgaaga ttcctattat taccaggttt
      421 tcatacgaga cgcagatgac ctcgagaaat ggatcttgga gaaaatcaag attgcaggcg
      481 ataaaagcta tgaagaccca actaacatac aggggaaata tcagaagcat gaatcctttg
      541 aagcagaggt gcaagcaaaa tcgagggtca ttcctgagct ggaagaaacc aggaaaattc
      601 gatttcctga ggggcatttt gcccatgagg acaccaaggt ccttctggag gaactcagcc
      661 acctgtggga cctgcttctg gagctgactc aagagaagag caccctgctg ctgcgggccc
      721 tgaagcttca gcagtactta caggagtgtg ctgacatctt ggagtggatt ggagacaagg
      781 aggctatagt gacatcagtg gagctgggtg aggactggga gcgcacagag gttctgcata
      841 agaagtttga agatttccaa gcagatctgg cagttcgaaa ggagaggttg aatggagtga
      901 accaatatgc caatgagtgt gctgaggaaa agcatcctga gctgccctta attcagtcaa
      961 agcaggagga agtgaatgca gcctgggagc ggctccatgg tctggctctc caacgacaga
     1021 aaaagctgtc cagcgctgca gacctccagc gattcaaaag ggatgtgact gaagccatcc
     1081 agtggattaa agagaaggag cctcaagtca cctctgaaga ctatggcaaa gaccttgtga
     1141 actctgaggc actgtttcac agtcacaaga cacttgagag gaaccttgca gtcatgaatg
     1201 acaaggtgaa ggagttatgt gccaaagcag acaagttgaa gctttcccat ccttcagatg
     1261 cagcgcagat ccagcagatg aaagaggatc tggtctccaa ctgggggcac attcgcacct
     1321 tggctaccag cagatatgaa aagctgcagg cttcttatag gtaccagcgg ttcttatctg
     1381 actatgatga gctctcaggc tggatgaagg agaagactgc tttgatcaat gctgatgagc
     1441 tgcccacaga tgtgactggt ggggaagccc tactggacag gcatcagcag cataagcatg
     1501 agattgactc ttatgatgac cgatttcaat ctgctaatga gactggtcaa gccctgctgg
     1561 atgccagtca tgaagcatct gatgaagtca tggataagat ggcagtactt acctcccatt
     1621 gggatgctct gctggaactg tgggacaagc gttggcagca gtatgagcag tgcctggaac
     1681 tacacctctt ctaccgtgac agtgagcaag tggacagttg gatgagtaga caagaggcct
     1741 tcctggaaaa tgaggacttg ggaaactcct tgggcagtgt tgaagccctt cttcagaagc
     1801 atgatgactt tgaggaagcc tttactgccc aggaggagaa gatcacaacc ttagacaaga
     1861 ctgcaaccaa actgattgat aatgaccatt atgattcaga gaacattgct gctatccggg
     1921 atgggctgtt ggcccgacag aatgctttac gtgaaagggc tgccactcga cgcagattgc
     1981 tggaggattc attgcttctg cagcaactgt atcaggactc agatgaccta aagaactgga
     2041 taaacaagaa gaaaaagttg gcagatgatg aagattacaa ggatacacag aacttgaaga
     2101 gccaggttca aaagcagcaa gtctttgaag aagaattggc agctaatgag atccagctca
     2161 ataacataca gaaaactggc caggagatga ttgagagcaa tcattatgcc tctgaaagtg
     2221 tggatgctcg tttgagtgaa gttgccaaac tctggacgga attgctggag gctacagcac
     2281 agaaagggac tcagttatat gaagctaaca agcagctgca atttgaaaat aatgcagaag
     2341 acctgaagca ctggctggag gaggtggaat ggcaggctag gtctgaggat tatgggaaag
     2401 gtctggctga tatacagaat ctgctcagga aacacggcct cctggagtct gccatggctg
     2461 ctcgtcagga tcaggtggac accctcacag acctggcagc atatattgaa gaactaggcc
     2521 atcccaatgc tggggacgta cgggcaaggc aggagtccct ggtgtctcgg tttgaagacc
     2581 tgaaaaagca gctggccaac cggaagaata agctcattga ccttctcctc ctgcaccaga
     2641 tctgcagaga cacagaggat gaggaggcct ggatccaaga gactgaacct tctgcagctt
     2701 ccacctacct tggcaaggac ctgattgcct ccaagaatct tctgaacaga caccaagtca
     2761 tccaggctaa tattgccaac catgagccac gcatccaagt gataacagag aggggaaaca
     2821 aaatggtaga ggaaggacac tttgctgcag aagatgtggc ctctagggtc aagagtttga
     2881 atgagaatat ggaatctctc caggctcgag ctgctagacg gcagaatgat cttgaagcca
     2941 atgtccagtt ccagcaatac ctagctgacc tgcatgaagc agaagcatgg attagagaga
     3001 gggaacctat agtagacaac actaactatg gggctgatga agaagcagct ggggctcttc
     3061 taaagaagca tgaggccttt ctagtggatc tgaaggcttt tggaaacagt atgcaagctc
     3121 ttcgggatca ggcagaagcc tgccagcaac aacaggctgc acctgtggag gaagctgctc
     3181 gagaagagag ggttgtggcc ttatatgact tccaggcccg cagcccccga gaagtcacca
     3241 tgaagaaaga tgatatctta acactgctca gttccatcaa caaggactgg tggaaagtgg
     3301 aagctgatga tcaccagggc tttgtgccag ctgtctacgt caggaaactt gcccgtgatg
     3361 agtttcctat gctcccgcaa cggaggcgag aagaaccagg caacatcacc cagcgtcagg
     3421 aacagattga aaaccagtac ctttctctcc tggatcgggc agaagaacgc agacgtcatc
     3481 tactgcaacg ttacaatgag tttttgctgg cctatgaggc aggagacatg ctggactgga
     3541 tccgagagaa aaaggcagaa aacagcgggg tggaattaga tgatgtttgg gagctgcaga
     3601 aaaagtttga tgagttccaa atggatttga agaccaatga gcctcggctg agggatatca
     3661 acaaggtggc tgatgatctt caatttgaag agcttctgac accagaagga gctcaaatac
     3721 agcaggagtt gaatgcccgc tgggggtcct tgcagaggct ggcagaggaa cagcgccagc
     3781 tcttgggcag tgcccatgct gtccaaatgt ttcacagaga agcagatgac accaaggaac
     3841 agattgagaa gaagtgccag gccctcagtg ctgctgaccc tggctcagac ttgttcagtg
     3901 ttcaggccct tcagcgacag cacgagggct ttgagagaga cctcataccc ctggaggaaa
     3961 aggtggctgt actgggggag acagcagatc ggctcagtga gtcccaccca gatgccaccg
     4021 atgacctgca aaggcagcga ctggagctga atcaggcctg ggatgacctg ctggggctta
     4081 cggaggaacg taaggagacc ctacaggagg acctaaaatt cttcctgttc ctcagccagg
     4141 ccagggacca acagaattgg ctcagtggca ttggtggtat ggtatcatcc caggagctag
     4201 ctgaggactt aactggcaca gagatcatga tagagcgaca ccaggagcat cttgctgaaa
     4261 tggaggccga ggctcccacc ttccaagcct tagaagactt cggtacagat cttataagca
     4321 gtgggcaccg tgccagccct aaaattgaag aagaacttca agctgtcaaa ctagagagag
     4381 atgagttgga gaaagcttgg aaacaacgga agaagatgct agatcagtgt cttgaattgc
     4441 agtttttccg agggaactgt gatcaggctg agagctggat ggtggtacgt gagaattacc
     4501 taaggtcaga tgataagggt tccttagaca gtctggaggc cttgatgaag aaacgtgatg
     4561 atttggacaa agcaatcact gcccaggaaa ataagatcac tgaactagaa ctttttgctg
     4621 agcagctcat agctgatgac cactatgccc aggaagagat ttctgctcgg cgccaacggg
     4681 tactagacag atggaaagct ctcaaagaac agctgattgc tgagcgaacg aaacttggag
     4741 actatgctga cctaaaacaa ttctaccatg acctcaagga ccaagaagaa tggatcagtg
     4801 agatgctgcc catagcctgt gatgaatctt acaaagaccc caccaacatt cagagaaaat
     4861 atctgaagca caagaccttt gaaaatgagg tctatggccg agctgaacag gtgaaaggag
     4921 tcatcacctt ggggaacact ctgattgaga ggagggcatg tgatggcaat gaagagacca
     4981 tgaagggtca agtagaagag ttggagaaaa actgggacta cttgtttgag agaacaattg
     5041 acaaaggaca gaagctcaac gaagctagtc gccagcagag gttcaacaca ggcatccggg
     5101 actttgagtt ctggctctca gaggcagaga cactgctgtc catgaaagat cacgccaggg
     5161 acttggcttc ggcaggaaac ttgctaaaga agcatcagct attggaaaca gagatgttgg
     5221 cccgaaagga tgcactcaag gacctgaata ccttggctgc agatctgatc tccagcggga
     5281 ccttcaatac tgaccagatt gtggagaaaa gggataatgt caacgagcgc ttcctgaatg
     5341 tccagaaatt ggcagctgaa catcatgaga aactgaaaga ggcttatgcc ttgttccagt
     5401 tcttccagga cctagacaat gaggaattct ggatagagga gaagttggta cgagtgcgat
     5461 cccaggatta tgggagggat ctgcaggggg ttcagaactt actgaagaag cacaaacgcc
     5521 tagaagggga gttggtgaca catgaaccca tcatccagaa tgtgctggat atggcggaga
     5581 ggctgggaga caaggctgcc gtggggcgag aggagatcca ggagaggctg aatcagtttg
     5641 ttcaacactg ggaccagctc aaagagttga ccaaggctcg agggattcgg ctgggagagt
     5701 ccctagaata cttggaattc atggagaatg ctgaggagga ggaagcttgg atcagtgaaa
     5761 aggaagctat ggttacccaa ggggattctg gagacacttt ggctgctact caaagcttgc
     5821 taaagaaact cgaagctttg gagaatgact tcgctgtcca tgagatccga gtgcaaaatg
     5881 tgtatgctca aggagaagac atcctgagca aggaggaaag tcagcataaa gagaaggttt
     5941 ctaccaagat agaggctcta aaagaaaaga ccccttctct ggccaaggca atggctgctt
     6001 ggaagttaca actagaagat gattatgact ttcagcagtt caactggaag gctgatgtgg
     6061 ttgaggcctg gatagctgag aaagaaacaa gcctgaagac caatggcaat ggtgcagacc
     6121 tcgctgcctt cctcactctc ctggcaaagc aggacacact gcatgccagt ctgcagagtt
     6181 tccagcaaga gagactgtct gagataactg acctgaagaa ccaactggtg gctgctgagc
     6241 acagccagac tgaagccatt aaagagcgcc atgctgccct gctgaggctc tgggaacagc
     6301 tgctggaagc ttctgaagcc cacagacagg aattgctgga aaaacagctg cccctacaga
     6361 aggccgagga tctattcatg gaatttgcac acaaggcttc agctttcaac aactggtgtg
     6421 agaatgctga ggaggacctg tcagagcctg tgcactgtgt ctcactggat gcaattcagc
     6481 ggctgaagaa ggaccatgag gacttcttgg cctccttggc aagggcccaa ggagacttca
     6541 actatttgct agagctagac cagcagatta aggccttaaa tgtgtcctct agtccctata
     6601 cgtggttaac agtggaggtg ctagaaagga tctggaatca cctatctgac atcgtcaagg
     6661 aaagggagca ggagctggaa aaggaagagt caagacaggt caagaacttt gagatgtgcc
     6721 aagaatttga acagaatgcc agtgccttcc ttgattggat cgtgcagacc agattcctga
     6781 tctggacctc catatccagg gattattttc tggatggatc tttgctaaaa gaaacaggaa
     6841 ctctagaatc ccagctggaa gcaaataaaa ggaagcagaa ggagatccag gcaatgaagc
     6901 gtaagctgac caagattgag gacctggggg aaaacttaga agaggctctg gtcctggaca
     6961 ttaaatacag caccattggg ctggctcagc agtgggacca gctctaccag cttgggatga
     7021 gaaggcaaca cagtctggaa caacagatcc aagccagaga catcactggt ctgagtgagg
     7081 agacactaca ggagtttgaa acagccttca ggcactttga tgagaatttg acaggtcgct
     7141 taagtcacaa agatttccgg tcctgcctga gagggctcaa ttactacttg cccatggtgg
     7201 aggaaggtga acctgagccc aagtttgaga aattcctgga tgctgttgat ccagggagaa
     7261 agggctatat ctcacaaacc gactataccg acttcctgat cgtcaaggag tcagagaaca
     7321 tcaagtccag cgatgaacta gaggatgctt tccaagccct ggcagagggc aaggcctata
     7381 ttaccaaaga ggacatgaag caggccctaa ccccagaaca agtgtcattc tgtgcctcac
     7441 atatgcagca atacatggac ccacggggcc gaagccagcc tgctggctat gattatgttg
     7501 gcttcatcag ttcctacttt ggcaagtgat aagcagctat tcctgggtca gagaatcttg
     7561 atgttgtggg aagtattggg ggatgtagga gacaggcgag tacagagggt ggaaagatag
     7621 tcgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtggggtg tgtgtgtgtg ttttacattt
     7681 attgcaggac ctgaaaaaat tctcaggctt gggagataaa ggcattaata aaattggagg
     7741 agaggaggcc atgggtttgt tttatatgca actagtcact gctgaggggt attaaacaag
     7801 gtctctattt ttcgtttgtt gagttctacc tatccttatt attttgtgtt tttttctgat
     7861 tatagaataa agtatttcct ttcaaaaaaa
//
LOCUS       XM_032652987            7905 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spectrin alpha, erythrocytic 1 (SPTA1),
            transcript variant X2, mRNA.
ACCESSION   XM_032652987
VERSION     XM_032652987.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7905
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7905
                     /gene="SPTA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764384"
     CDS             291..7544
                     /gene="SPTA1"
                     /codon_start=1
                     /product="spectrin alpha chain, erythrocytic 1 isoform X1"
                     /protein_id="XP_032508878.1"
                     /db_xref="GeneID:116764384"
                     /translation="MESGGPKVLETAEEIQERRQEVLTRYRRFKELVAERGQKLEDSY
                     YYQVFIRDADDLEKWILEKIKIAGDKSYEDPTNIQGKYQKHESFEAEVQAKSRVIPEL
                     EETRKIRFPEGHFAHEDTKVLLEELSHLWDLLLELTQEKSTLLLRALKLQQYLQECAD
                     ILEWIGDKEAIVTSVELGEDWERTEVLHKKFEDFQADLAVRKERLNGVNQYANECAEE
                     KHPELPLIQSKQEEVNAAWERLHGLALQRQKKLSSAADLQRFKRDVTEAIQWIKEKEP
                     QVTSEDYGKDLVNSEALFHSHKTLERNLAVMNDKVKELCAKADKLKLSHPSDAAQIQQ
                     MKEDLVSNWGHIRTLATSRYEKLQASYRYQRFLSDYDELSGWMKEKTALINADELPTD
                     VTGGEALLDRHQQHKHEIDSYDDRFQSANETGQALLDASHEASDEVMDKMAVLTSHWD
                     ALLELWDKRWQQYEQCLELHLFYRDSEQVDSWMSRQEAFLENEDLGNSLGSVEALLQK
                     HDDFEEAFTAQEEKITTLDKTATKLIDNDHYDSENIAAIRDGLLARQNALRERAATRR
                     RLLEDSLLLQQLYQDSDDLKNWINKKKKLADDEDYKDTQNLKSQVQKQQVFEEELAAN
                     EIQLNNIQKTGQEMIESNHYASESVDARLSEVAKLWTELLEATAQKGTQLYEANKQLQ
                     FENNAEDLKHWLEEVEWQARSEDYGKGLADIQNLLRKHGLLESAMAARQDQVDTLTDL
                     AAYIEELGHPNAGDVRARQESLVSRFEDLKKQLANRKNKLIDLLLLHQICRDTEDEEA
                     WIQETEPSAASTYLGKDLIASKNLLNRHQVIQANIANHEPRIQVITERGNKMVEEGHF
                     AAEDVASRVKSLNENMESLQARAARRQNDLEANVQFQQYLADLHEAEAWIREREPIVD
                     NTNYGADEEAAGALLKKHEAFLVDLKAFGNSMQALRDQAEACQQQQAAPVEEAAREER
                     VVALYDFQARSPREVTMKKDDILTLLSSINKDWWKVEADDHQGFVPAVYVRKLARDEF
                     PMLPQRRREEPGNITQRQEQIENQYLSLLDRAEERRRHLLQRYNEFLLAYEAGDMLDW
                     IREKKAENSGVELDDVWELQKKFDEFQMDLKTNEPRLRDINKVADDLQFEELLTPEGA
                     QIQQELNARWGSLQRLAEEQRQLLGSAHAVQMFHREADDTKEQIEKKCQALSAADPGS
                     DLFSVQALQRQHEGFERDLIPLEEKVAVLGETADRLSESHPDATDDLQRQRLELNQAW
                     DDLLGLTEERKETLQEDLKFFLFLSQARDQQNWLSGIGGMVSSQELAEDLTGTEIMIE
                     RHQEHLAEMEAEAPTFQALEDFGTDLISSGHRASPKIEEELQAVKLERDELEKAWKQR
                     KKMLDQCLELQFFRGNCDQAESWMVVRENYLRSDDKGSLDSLEALMKKRDDLDKAITA
                     QENKITELELFAEQLIADDHYAQEEISARRQRVLDRWKALKEQLIAERTKLGDYADLK
                     QFYHDLKDQEEWISEMLPIACDESYKDPTNIQRKYLKHKTFENEVYGRAEQVKGVITL
                     GNTLIERRACDGNEETMKGQVEELEKNWDYLFERTIDKGQKLNEASRQQRFNTGIRDF
                     EFWLSEAETLLSMKDHARDLASAGNLLKKHQLLETEMLARKDALKDLNTLAADLISSG
                     TFNTDQIVEKRDNVNERFLNVQKLAAEHHEKLKEAYALFQFFQDLDNEEFWIEEKLVR
                     VRSQDYGRDLQGVQNLLKKHKRLEGELVTHEPIIQNVLDMAERLGDKAAVGREEIQER
                     LNQFVQHWDQLKELTKARGIRLGESLEYLEFMENAEEEEAWISEKEAMVTQGDSGDTL
                     AATQSLLKKLEALENDFAVHEIRVQNVYAQGEDILSKEESQHKEKVSTKIEALKEKTP
                     SLAKAMAAWKLQLEDDYDFQQFNWKADVVEAWIAEKETSLKTNGNGADLAAFLTLLAK
                     QDTLHASLQSFQQERLSEITDLKNQLVAAEHSQTEAIKERHAALLRLWEQLLEASEAH
                     RQELLEKQLPLQKAEDLFMEFAHKASAFNNWCENAEEDLSEPVHCVSLDAIQRLKKDH
                     EDFLASLARAQGDFNYLLELDQQIKALNVSSSPYTWLTVEVLERIWNHLSDIVKEREQ
                     ELEKEESRQVKNFEMCQEFEQNASAFLDWIVQTRFLIWTSISRDYFLDGSLLKETGTL
                     ESQLEANKRKQKEIQAMKRKLTKIEDLGENLEEALVLDIKYSTIGLAQQWDQLYQLGM
                     RRQHSLEQQIQARDITGLSEETLQEFETAFRHFDENLTGRLSHKDFRSCLRGLNYYLP
                     MVEEGEPEPKFEKFLDAVDPGRKGYISQTDYTDFLIVKESENIKSSDELEDAFQALAE
                     GKAYITKEDMKQALTPEQVSFCASHMQQYMDPRGRSQPAGYDYVGFISSYFGK"
     misc_feature    417..434
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    426..731
                     /gene="SPTA1"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    738..1373
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    1050..1067
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    1374..2009
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    1686..1703
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2007..2312
                     /gene="SPTA1"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    2325..2954
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2637..2654
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2961..3812
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    3207..3362
                     /gene="SPTA1"
                     /note="Src homology 3 domain of Alpha Spectrin; Region:
                     SH3_Alpha_Spectrin; cd11808"
                     /db_xref="CDD:212742"
     misc_feature    order(3219..3221,3225..3227,3234..3236,3300..3305,
                     3342..3344,3348..3353)
                     /gene="SPTA1"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212742"
     misc_feature    3504..3521
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    3819..4448
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4125..4142
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    4449..5081
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4758..4775
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5085..5720
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    5397..5414
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5760..6356
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    6036..6053
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    6387..7064
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    6699..6716
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    7107..7289
                     /gene="SPTA1"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     Region: EFh; cl08302"
                     /db_xref="CDD:415501"
     misc_feature    order(7134..7136,7140..7142,7146..7148,7167..7169,
                     7263..7265,7269..7271,7275..7277)
                     /gene="SPTA1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238008"
     misc_feature    7332..7538
                     /gene="SPTA1"
                     /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen;
                     pfam08726"
                     /db_xref="CDD:430177"
ORIGIN      
        1 tagctggcgg gattctggcc caagtgaagg gctacttttt ttctttgtct tgccacatat
       61 gtaacgtttc tctcatctct atctgaatta gactagacaa ctacatgtga attgtttctc
      121 tttctctccc tttgtctctc tgtctctctc tctctctctc tctgtgtgtc ttttggatac
      181 attttatttt gacaggttct tgacctttag gaaaagcgta acactttcca aaggaaaccg
      241 atcagcaaga attgtttctt gattcttaag agatttttaa cttgcaggct atggagagtg
      301 gtgggccaaa ggtgctggaa acagcagaag agatccagga gagacgtcag gaggtgttga
      361 cccggtaccg gaggttcaag gaactggttg ctgagagggg tcagaagctt gaagattcct
      421 attattacca ggttttcata cgagacgcag atgacctcga gaaatggatc ttggagaaaa
      481 tcaagattgc aggcgataaa agctatgaag acccaactaa catacagggg aaatatcaga
      541 agcatgaatc ctttgaagca gaggtgcaag caaaatcgag ggtcattcct gagctggaag
      601 aaaccaggaa aattcgattt cctgaggggc attttgccca tgaggacacc aaggtccttc
      661 tggaggaact cagccacctg tgggacctgc ttctggagct gactcaagag aagagcaccc
      721 tgctgctgcg ggccctgaag cttcagcagt acttacagga gtgtgctgac atcttggagt
      781 ggattggaga caaggaggct atagtgacat cagtggagct gggtgaggac tgggagcgca
      841 cagaggttct gcataagaag tttgaagatt tccaagcaga tctggcagtt cgaaaggaga
      901 ggttgaatgg agtgaaccaa tatgccaatg agtgtgctga ggaaaagcat cctgagctgc
      961 ccttaattca gtcaaagcag gaggaagtga atgcagcctg ggagcggctc catggtctgg
     1021 ctctccaacg acagaaaaag ctgtccagcg ctgcagacct ccagcgattc aaaagggatg
     1081 tgactgaagc catccagtgg attaaagaga aggagcctca agtcacctct gaagactatg
     1141 gcaaagacct tgtgaactct gaggcactgt ttcacagtca caagacactt gagaggaacc
     1201 ttgcagtcat gaatgacaag gtgaaggagt tatgtgccaa agcagacaag ttgaagcttt
     1261 cccatccttc agatgcagcg cagatccagc agatgaaaga ggatctggtc tccaactggg
     1321 ggcacattcg caccttggct accagcagat atgaaaagct gcaggcttct tataggtacc
     1381 agcggttctt atctgactat gatgagctct caggctggat gaaggagaag actgctttga
     1441 tcaatgctga tgagctgccc acagatgtga ctggtgggga agccctactg gacaggcatc
     1501 agcagcataa gcatgagatt gactcttatg atgaccgatt tcaatctgct aatgagactg
     1561 gtcaagccct gctggatgcc agtcatgaag catctgatga agtcatggat aagatggcag
     1621 tacttacctc ccattgggat gctctgctgg aactgtggga caagcgttgg cagcagtatg
     1681 agcagtgcct ggaactacac ctcttctacc gtgacagtga gcaagtggac agttggatga
     1741 gtagacaaga ggccttcctg gaaaatgagg acttgggaaa ctccttgggc agtgttgaag
     1801 cccttcttca gaagcatgat gactttgagg aagcctttac tgcccaggag gagaagatca
     1861 caaccttaga caagactgca accaaactga ttgataatga ccattatgat tcagagaaca
     1921 ttgctgctat ccgggatggg ctgttggccc gacagaatgc tttacgtgaa agggctgcca
     1981 ctcgacgcag attgctggag gattcattgc ttctgcagca actgtatcag gactcagatg
     2041 acctaaagaa ctggataaac aagaagaaaa agttggcaga tgatgaagat tacaaggata
     2101 cacagaactt gaagagccag gttcaaaagc agcaagtctt tgaagaagaa ttggcagcta
     2161 atgagatcca gctcaataac atacagaaaa ctggccagga gatgattgag agcaatcatt
     2221 atgcctctga aagtgtggat gctcgtttga gtgaagttgc caaactctgg acggaattgc
     2281 tggaggctac agcacagaaa gggactcagt tatatgaagc taacaagcag ctgcaatttg
     2341 aaaataatgc agaagacctg aagcactggc tggaggaggt ggaatggcag gctaggtctg
     2401 aggattatgg gaaaggtctg gctgatatac agaatctgct caggaaacac ggcctcctgg
     2461 agtctgccat ggctgctcgt caggatcagg tggacaccct cacagacctg gcagcatata
     2521 ttgaagaact aggccatccc aatgctgggg acgtacgggc aaggcaggag tccctggtgt
     2581 ctcggtttga agacctgaaa aagcagctgg ccaaccggaa gaataagctc attgaccttc
     2641 tcctcctgca ccagatctgc agagacacag aggatgagga ggcctggatc caagagactg
     2701 aaccttctgc agcttccacc taccttggca aggacctgat tgcctccaag aatcttctga
     2761 acagacacca agtcatccag gctaatattg ccaaccatga gccacgcatc caagtgataa
     2821 cagagagggg aaacaaaatg gtagaggaag gacactttgc tgcagaagat gtggcctcta
     2881 gggtcaagag tttgaatgag aatatggaat ctctccaggc tcgagctgct agacggcaga
     2941 atgatcttga agccaatgtc cagttccagc aatacctagc tgacctgcat gaagcagaag
     3001 catggattag agagagggaa cctatagtag acaacactaa ctatggggct gatgaagaag
     3061 cagctggggc tcttctaaag aagcatgagg cctttctagt ggatctgaag gcttttggaa
     3121 acagtatgca agctcttcgg gatcaggcag aagcctgcca gcaacaacag gctgcacctg
     3181 tggaggaagc tgctcgagaa gagagggttg tggccttata tgacttccag gcccgcagcc
     3241 cccgagaagt caccatgaag aaagatgata tcttaacact gctcagttcc atcaacaagg
     3301 actggtggaa agtggaagct gatgatcacc agggctttgt gccagctgtc tacgtcagga
     3361 aacttgcccg tgatgagttt cctatgctcc cgcaacggag gcgagaagaa ccaggcaaca
     3421 tcacccagcg tcaggaacag attgaaaacc agtacctttc tctcctggat cgggcagaag
     3481 aacgcagacg tcatctactg caacgttaca atgagttttt gctggcctat gaggcaggag
     3541 acatgctgga ctggatccga gagaaaaagg cagaaaacag cggggtggaa ttagatgatg
     3601 tttgggagct gcagaaaaag tttgatgagt tccaaatgga tttgaagacc aatgagcctc
     3661 ggctgaggga tatcaacaag gtggctgatg atcttcaatt tgaagagctt ctgacaccag
     3721 aaggagctca aatacagcag gagttgaatg cccgctgggg gtccttgcag aggctggcag
     3781 aggaacagcg ccagctcttg ggcagtgccc atgctgtcca aatgtttcac agagaagcag
     3841 atgacaccaa ggaacagatt gagaagaagt gccaggccct cagtgctgct gaccctggct
     3901 cagacttgtt cagtgttcag gcccttcagc gacagcacga gggctttgag agagacctca
     3961 tacccctgga ggaaaaggtg gctgtactgg gggagacagc agatcggctc agtgagtccc
     4021 acccagatgc caccgatgac ctgcaaaggc agcgactgga gctgaatcag gcctgggatg
     4081 acctgctggg gcttacggag gaacgtaagg agaccctaca ggaggaccta aaattcttcc
     4141 tgttcctcag ccaggccagg gaccaacaga attggctcag tggcattggt ggtatggtat
     4201 catcccagga gctagctgag gacttaactg gcacagagat catgatagag cgacaccagg
     4261 agcatcttgc tgaaatggag gccgaggctc ccaccttcca agccttagaa gacttcggta
     4321 cagatcttat aagcagtggg caccgtgcca gccctaaaat tgaagaagaa cttcaagctg
     4381 tcaaactaga gagagatgag ttggagaaag cttggaaaca acggaagaag atgctagatc
     4441 agtgtcttga attgcagttt ttccgaggga actgtgatca ggctgagagc tggatggtgg
     4501 tacgtgagaa ttacctaagg tcagatgata agggttcctt agacagtctg gaggccttga
     4561 tgaagaaacg tgatgatttg gacaaagcaa tcactgccca ggaaaataag atcactgaac
     4621 tagaactttt tgctgagcag ctcatagctg atgaccacta tgcccaggaa gagatttctg
     4681 ctcggcgcca acgggtacta gacagatgga aagctctcaa agaacagctg attgctgagc
     4741 gaacgaaact tggagactat gctgacctaa aacaattcta ccatgacctc aaggaccaag
     4801 aagaatggat cagtgagatg ctgcccatag cctgtgatga atcttacaaa gaccccacca
     4861 acattcagag aaaatatctg aagcacaaga cctttgaaaa tgaggtctat ggccgagctg
     4921 aacaggtgaa aggagtcatc accttgggga acactctgat tgagaggagg gcatgtgatg
     4981 gcaatgaaga gaccatgaag ggtcaagtag aagagttgga gaaaaactgg gactacttgt
     5041 ttgagagaac aattgacaaa ggacagaagc tcaacgaagc tagtcgccag cagaggttca
     5101 acacaggcat ccgggacttt gagttctggc tctcagaggc agagacactg ctgtccatga
     5161 aagatcacgc cagggacttg gcttcggcag gaaacttgct aaagaagcat cagctattgg
     5221 aaacagagat gttggcccga aaggatgcac tcaaggacct gaataccttg gctgcagatc
     5281 tgatctccag cgggaccttc aatactgacc agattgtgga gaaaagggat aatgtcaacg
     5341 agcgcttcct gaatgtccag aaattggcag ctgaacatca tgagaaactg aaagaggctt
     5401 atgccttgtt ccagttcttc caggacctag acaatgagga attctggata gaggagaagt
     5461 tggtacgagt gcgatcccag gattatggga gggatctgca gggggttcag aacttactga
     5521 agaagcacaa acgcctagaa ggggagttgg tgacacatga acccatcatc cagaatgtgc
     5581 tggatatggc ggagaggctg ggagacaagg ctgccgtggg gcgagaggag atccaggaga
     5641 ggctgaatca gtttgttcaa cactgggacc agctcaaaga gttgaccaag gctcgaggga
     5701 ttcggctggg agagtcccta gaatacttgg aattcatgga gaatgctgag gaggaggaag
     5761 cttggatcag tgaaaaggaa gctatggtta cccaagggga ttctggagac actttggctg
     5821 ctactcaaag cttgctaaag aaactcgaag ctttggagaa tgacttcgct gtccatgaga
     5881 tccgagtgca aaatgtgtat gctcaaggag aagacatcct gagcaaggag gaaagtcagc
     5941 ataaagagaa ggtttctacc aagatagagg ctctaaaaga aaagacccct tctctggcca
     6001 aggcaatggc tgcttggaag ttacaactag aagatgatta tgactttcag cagttcaact
     6061 ggaaggctga tgtggttgag gcctggatag ctgagaaaga aacaagcctg aagaccaatg
     6121 gcaatggtgc agacctcgct gccttcctca ctctcctggc aaagcaggac acactgcatg
     6181 ccagtctgca gagtttccag caagagagac tgtctgagat aactgacctg aagaaccaac
     6241 tggtggctgc tgagcacagc cagactgaag ccattaaaga gcgccatgct gccctgctga
     6301 ggctctggga acagctgctg gaagcttctg aagcccacag acaggaattg ctggaaaaac
     6361 agctgcccct acagaaggcc gaggatctat tcatggaatt tgcacacaag gcttcagctt
     6421 tcaacaactg gtgtgagaat gctgaggagg acctgtcaga gcctgtgcac tgtgtctcac
     6481 tggatgcaat tcagcggctg aagaaggacc atgaggactt cttggcctcc ttggcaaggg
     6541 cccaaggaga cttcaactat ttgctagagc tagaccagca gattaaggcc ttaaatgtgt
     6601 cctctagtcc ctatacgtgg ttaacagtgg aggtgctaga aaggatctgg aatcacctat
     6661 ctgacatcgt caaggaaagg gagcaggagc tggaaaagga agagtcaaga caggtcaaga
     6721 actttgagat gtgccaagaa tttgaacaga atgccagtgc cttccttgat tggatcgtgc
     6781 agaccagatt cctgatctgg acctccatat ccagggatta ttttctggat ggatctttgc
     6841 taaaagaaac aggaactcta gaatcccagc tggaagcaaa taaaaggaag cagaaggaga
     6901 tccaggcaat gaagcgtaag ctgaccaaga ttgaggacct gggggaaaac ttagaagagg
     6961 ctctggtcct ggacattaaa tacagcacca ttgggctggc tcagcagtgg gaccagctct
     7021 accagcttgg gatgagaagg caacacagtc tggaacaaca gatccaagcc agagacatca
     7081 ctggtctgag tgaggagaca ctacaggagt ttgaaacagc cttcaggcac tttgatgaga
     7141 atttgacagg tcgcttaagt cacaaagatt tccggtcctg cctgagaggg ctcaattact
     7201 acttgcccat ggtggaggaa ggtgaacctg agcccaagtt tgagaaattc ctggatgctg
     7261 ttgatccagg gagaaagggc tatatctcac aaaccgacta taccgacttc ctgatcgtca
     7321 aggagtcaga gaacatcaag tccagcgatg aactagagga tgctttccaa gccctggcag
     7381 agggcaaggc ctatattacc aaagaggaca tgaagcaggc cctaacccca gaacaagtgt
     7441 cattctgtgc ctcacatatg cagcaataca tggacccacg gggccgaagc cagcctgctg
     7501 gctatgatta tgttggcttc atcagttcct actttggcaa gtgataagca gctattcctg
     7561 ggtcagagaa tcttgatgtt gtgggaagta ttgggggatg taggagacag gcgagtacag
     7621 agggtggaaa gatagtcgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg gggtgtgtgt
     7681 gtgtgtttta catttattgc aggacctgaa aaaattctca ggcttgggag ataaaggcat
     7741 taataaaatt ggaggagagg aggccatggg tttgttttat atgcaactag tcactgctga
     7801 ggggtattaa acaaggtctc tatttttcgt ttgttgagtt ctacctatcc ttattatttt
     7861 gtgttttttt ctgattatag aataaagtat ttcctttcaa aaaaa
//
LOCUS       XM_032652996            7857 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spectrin alpha, erythrocytic 1 (SPTA1),
            transcript variant X3, mRNA.
ACCESSION   XM_032652996
VERSION     XM_032652996.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7857
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7857
                     /gene="SPTA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764384"
     CDS             243..7496
                     /gene="SPTA1"
                     /codon_start=1
                     /product="spectrin alpha chain, erythrocytic 1 isoform X1"
                     /protein_id="XP_032508887.1"
                     /db_xref="GeneID:116764384"
                     /translation="MESGGPKVLETAEEIQERRQEVLTRYRRFKELVAERGQKLEDSY
                     YYQVFIRDADDLEKWILEKIKIAGDKSYEDPTNIQGKYQKHESFEAEVQAKSRVIPEL
                     EETRKIRFPEGHFAHEDTKVLLEELSHLWDLLLELTQEKSTLLLRALKLQQYLQECAD
                     ILEWIGDKEAIVTSVELGEDWERTEVLHKKFEDFQADLAVRKERLNGVNQYANECAEE
                     KHPELPLIQSKQEEVNAAWERLHGLALQRQKKLSSAADLQRFKRDVTEAIQWIKEKEP
                     QVTSEDYGKDLVNSEALFHSHKTLERNLAVMNDKVKELCAKADKLKLSHPSDAAQIQQ
                     MKEDLVSNWGHIRTLATSRYEKLQASYRYQRFLSDYDELSGWMKEKTALINADELPTD
                     VTGGEALLDRHQQHKHEIDSYDDRFQSANETGQALLDASHEASDEVMDKMAVLTSHWD
                     ALLELWDKRWQQYEQCLELHLFYRDSEQVDSWMSRQEAFLENEDLGNSLGSVEALLQK
                     HDDFEEAFTAQEEKITTLDKTATKLIDNDHYDSENIAAIRDGLLARQNALRERAATRR
                     RLLEDSLLLQQLYQDSDDLKNWINKKKKLADDEDYKDTQNLKSQVQKQQVFEEELAAN
                     EIQLNNIQKTGQEMIESNHYASESVDARLSEVAKLWTELLEATAQKGTQLYEANKQLQ
                     FENNAEDLKHWLEEVEWQARSEDYGKGLADIQNLLRKHGLLESAMAARQDQVDTLTDL
                     AAYIEELGHPNAGDVRARQESLVSRFEDLKKQLANRKNKLIDLLLLHQICRDTEDEEA
                     WIQETEPSAASTYLGKDLIASKNLLNRHQVIQANIANHEPRIQVITERGNKMVEEGHF
                     AAEDVASRVKSLNENMESLQARAARRQNDLEANVQFQQYLADLHEAEAWIREREPIVD
                     NTNYGADEEAAGALLKKHEAFLVDLKAFGNSMQALRDQAEACQQQQAAPVEEAAREER
                     VVALYDFQARSPREVTMKKDDILTLLSSINKDWWKVEADDHQGFVPAVYVRKLARDEF
                     PMLPQRRREEPGNITQRQEQIENQYLSLLDRAEERRRHLLQRYNEFLLAYEAGDMLDW
                     IREKKAENSGVELDDVWELQKKFDEFQMDLKTNEPRLRDINKVADDLQFEELLTPEGA
                     QIQQELNARWGSLQRLAEEQRQLLGSAHAVQMFHREADDTKEQIEKKCQALSAADPGS
                     DLFSVQALQRQHEGFERDLIPLEEKVAVLGETADRLSESHPDATDDLQRQRLELNQAW
                     DDLLGLTEERKETLQEDLKFFLFLSQARDQQNWLSGIGGMVSSQELAEDLTGTEIMIE
                     RHQEHLAEMEAEAPTFQALEDFGTDLISSGHRASPKIEEELQAVKLERDELEKAWKQR
                     KKMLDQCLELQFFRGNCDQAESWMVVRENYLRSDDKGSLDSLEALMKKRDDLDKAITA
                     QENKITELELFAEQLIADDHYAQEEISARRQRVLDRWKALKEQLIAERTKLGDYADLK
                     QFYHDLKDQEEWISEMLPIACDESYKDPTNIQRKYLKHKTFENEVYGRAEQVKGVITL
                     GNTLIERRACDGNEETMKGQVEELEKNWDYLFERTIDKGQKLNEASRQQRFNTGIRDF
                     EFWLSEAETLLSMKDHARDLASAGNLLKKHQLLETEMLARKDALKDLNTLAADLISSG
                     TFNTDQIVEKRDNVNERFLNVQKLAAEHHEKLKEAYALFQFFQDLDNEEFWIEEKLVR
                     VRSQDYGRDLQGVQNLLKKHKRLEGELVTHEPIIQNVLDMAERLGDKAAVGREEIQER
                     LNQFVQHWDQLKELTKARGIRLGESLEYLEFMENAEEEEAWISEKEAMVTQGDSGDTL
                     AATQSLLKKLEALENDFAVHEIRVQNVYAQGEDILSKEESQHKEKVSTKIEALKEKTP
                     SLAKAMAAWKLQLEDDYDFQQFNWKADVVEAWIAEKETSLKTNGNGADLAAFLTLLAK
                     QDTLHASLQSFQQERLSEITDLKNQLVAAEHSQTEAIKERHAALLRLWEQLLEASEAH
                     RQELLEKQLPLQKAEDLFMEFAHKASAFNNWCENAEEDLSEPVHCVSLDAIQRLKKDH
                     EDFLASLARAQGDFNYLLELDQQIKALNVSSSPYTWLTVEVLERIWNHLSDIVKEREQ
                     ELEKEESRQVKNFEMCQEFEQNASAFLDWIVQTRFLIWTSISRDYFLDGSLLKETGTL
                     ESQLEANKRKQKEIQAMKRKLTKIEDLGENLEEALVLDIKYSTIGLAQQWDQLYQLGM
                     RRQHSLEQQIQARDITGLSEETLQEFETAFRHFDENLTGRLSHKDFRSCLRGLNYYLP
                     MVEEGEPEPKFEKFLDAVDPGRKGYISQTDYTDFLIVKESENIKSSDELEDAFQALAE
                     GKAYITKEDMKQALTPEQVSFCASHMQQYMDPRGRSQPAGYDYVGFISSYFGK"
     misc_feature    369..386
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    378..683
                     /gene="SPTA1"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    690..1325
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    1002..1019
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    1326..1961
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    1638..1655
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    1959..2264
                     /gene="SPTA1"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    2277..2906
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2589..2606
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2913..3764
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    3159..3314
                     /gene="SPTA1"
                     /note="Src homology 3 domain of Alpha Spectrin; Region:
                     SH3_Alpha_Spectrin; cd11808"
                     /db_xref="CDD:212742"
     misc_feature    order(3171..3173,3177..3179,3186..3188,3252..3257,
                     3294..3296,3300..3305)
                     /gene="SPTA1"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212742"
     misc_feature    3456..3473
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    3771..4400
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4077..4094
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    4401..5033
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4710..4727
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5037..5672
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    5349..5366
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5712..6308
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    5988..6005
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    6339..7016
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    6651..6668
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    7059..7241
                     /gene="SPTA1"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     Region: EFh; cl08302"
                     /db_xref="CDD:415501"
     misc_feature    order(7086..7088,7092..7094,7098..7100,7119..7121,
                     7215..7217,7221..7223,7227..7229)
                     /gene="SPTA1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238008"
     misc_feature    7284..7490
                     /gene="SPTA1"
                     /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen;
                     pfam08726"
                     /db_xref="CDD:430177"
ORIGIN      
        1 tagctggcgg gattctggcc caagtgaagg gctacttttt ttctttgtct tgccacatat
       61 gtaacgtttc tctcatctct atctgaatta gactagacaa ctacatgtga attgtttctc
      121 tttctctccc tttgtctctc tgtctctctc tctctctctc tctgtgtgtc ttttggatac
      181 attttatttt gacaggttct tgacctttag gaaaagcgta acactttcca aaggaaaccg
      241 ctatggagag tggtgggcca aaggtgctgg aaacagcaga agagatccag gagagacgtc
      301 aggaggtgtt gacccggtac cggaggttca aggaactggt tgctgagagg ggtcagaagc
      361 ttgaagattc ctattattac caggttttca tacgagacgc agatgacctc gagaaatgga
      421 tcttggagaa aatcaagatt gcaggcgata aaagctatga agacccaact aacatacagg
      481 ggaaatatca gaagcatgaa tcctttgaag cagaggtgca agcaaaatcg agggtcattc
      541 ctgagctgga agaaaccagg aaaattcgat ttcctgaggg gcattttgcc catgaggaca
      601 ccaaggtcct tctggaggaa ctcagccacc tgtgggacct gcttctggag ctgactcaag
      661 agaagagcac cctgctgctg cgggccctga agcttcagca gtacttacag gagtgtgctg
      721 acatcttgga gtggattgga gacaaggagg ctatagtgac atcagtggag ctgggtgagg
      781 actgggagcg cacagaggtt ctgcataaga agtttgaaga tttccaagca gatctggcag
      841 ttcgaaagga gaggttgaat ggagtgaacc aatatgccaa tgagtgtgct gaggaaaagc
      901 atcctgagct gcccttaatt cagtcaaagc aggaggaagt gaatgcagcc tgggagcggc
      961 tccatggtct ggctctccaa cgacagaaaa agctgtccag cgctgcagac ctccagcgat
     1021 tcaaaaggga tgtgactgaa gccatccagt ggattaaaga gaaggagcct caagtcacct
     1081 ctgaagacta tggcaaagac cttgtgaact ctgaggcact gtttcacagt cacaagacac
     1141 ttgagaggaa ccttgcagtc atgaatgaca aggtgaagga gttatgtgcc aaagcagaca
     1201 agttgaagct ttcccatcct tcagatgcag cgcagatcca gcagatgaaa gaggatctgg
     1261 tctccaactg ggggcacatt cgcaccttgg ctaccagcag atatgaaaag ctgcaggctt
     1321 cttataggta ccagcggttc ttatctgact atgatgagct ctcaggctgg atgaaggaga
     1381 agactgcttt gatcaatgct gatgagctgc ccacagatgt gactggtggg gaagccctac
     1441 tggacaggca tcagcagcat aagcatgaga ttgactctta tgatgaccga tttcaatctg
     1501 ctaatgagac tggtcaagcc ctgctggatg ccagtcatga agcatctgat gaagtcatgg
     1561 ataagatggc agtacttacc tcccattggg atgctctgct ggaactgtgg gacaagcgtt
     1621 ggcagcagta tgagcagtgc ctggaactac acctcttcta ccgtgacagt gagcaagtgg
     1681 acagttggat gagtagacaa gaggccttcc tggaaaatga ggacttggga aactccttgg
     1741 gcagtgttga agcccttctt cagaagcatg atgactttga ggaagccttt actgcccagg
     1801 aggagaagat cacaacctta gacaagactg caaccaaact gattgataat gaccattatg
     1861 attcagagaa cattgctgct atccgggatg ggctgttggc ccgacagaat gctttacgtg
     1921 aaagggctgc cactcgacgc agattgctgg aggattcatt gcttctgcag caactgtatc
     1981 aggactcaga tgacctaaag aactggataa acaagaagaa aaagttggca gatgatgaag
     2041 attacaagga tacacagaac ttgaagagcc aggttcaaaa gcagcaagtc tttgaagaag
     2101 aattggcagc taatgagatc cagctcaata acatacagaa aactggccag gagatgattg
     2161 agagcaatca ttatgcctct gaaagtgtgg atgctcgttt gagtgaagtt gccaaactct
     2221 ggacggaatt gctggaggct acagcacaga aagggactca gttatatgaa gctaacaagc
     2281 agctgcaatt tgaaaataat gcagaagacc tgaagcactg gctggaggag gtggaatggc
     2341 aggctaggtc tgaggattat gggaaaggtc tggctgatat acagaatctg ctcaggaaac
     2401 acggcctcct ggagtctgcc atggctgctc gtcaggatca ggtggacacc ctcacagacc
     2461 tggcagcata tattgaagaa ctaggccatc ccaatgctgg ggacgtacgg gcaaggcagg
     2521 agtccctggt gtctcggttt gaagacctga aaaagcagct ggccaaccgg aagaataagc
     2581 tcattgacct tctcctcctg caccagatct gcagagacac agaggatgag gaggcctgga
     2641 tccaagagac tgaaccttct gcagcttcca cctaccttgg caaggacctg attgcctcca
     2701 agaatcttct gaacagacac caagtcatcc aggctaatat tgccaaccat gagccacgca
     2761 tccaagtgat aacagagagg ggaaacaaaa tggtagagga aggacacttt gctgcagaag
     2821 atgtggcctc tagggtcaag agtttgaatg agaatatgga atctctccag gctcgagctg
     2881 ctagacggca gaatgatctt gaagccaatg tccagttcca gcaataccta gctgacctgc
     2941 atgaagcaga agcatggatt agagagaggg aacctatagt agacaacact aactatgggg
     3001 ctgatgaaga agcagctggg gctcttctaa agaagcatga ggcctttcta gtggatctga
     3061 aggcttttgg aaacagtatg caagctcttc gggatcaggc agaagcctgc cagcaacaac
     3121 aggctgcacc tgtggaggaa gctgctcgag aagagagggt tgtggcctta tatgacttcc
     3181 aggcccgcag cccccgagaa gtcaccatga agaaagatga tatcttaaca ctgctcagtt
     3241 ccatcaacaa ggactggtgg aaagtggaag ctgatgatca ccagggcttt gtgccagctg
     3301 tctacgtcag gaaacttgcc cgtgatgagt ttcctatgct cccgcaacgg aggcgagaag
     3361 aaccaggcaa catcacccag cgtcaggaac agattgaaaa ccagtacctt tctctcctgg
     3421 atcgggcaga agaacgcaga cgtcatctac tgcaacgtta caatgagttt ttgctggcct
     3481 atgaggcagg agacatgctg gactggatcc gagagaaaaa ggcagaaaac agcggggtgg
     3541 aattagatga tgtttgggag ctgcagaaaa agtttgatga gttccaaatg gatttgaaga
     3601 ccaatgagcc tcggctgagg gatatcaaca aggtggctga tgatcttcaa tttgaagagc
     3661 ttctgacacc agaaggagct caaatacagc aggagttgaa tgcccgctgg gggtccttgc
     3721 agaggctggc agaggaacag cgccagctct tgggcagtgc ccatgctgtc caaatgtttc
     3781 acagagaagc agatgacacc aaggaacaga ttgagaagaa gtgccaggcc ctcagtgctg
     3841 ctgaccctgg ctcagacttg ttcagtgttc aggcccttca gcgacagcac gagggctttg
     3901 agagagacct catacccctg gaggaaaagg tggctgtact gggggagaca gcagatcggc
     3961 tcagtgagtc ccacccagat gccaccgatg acctgcaaag gcagcgactg gagctgaatc
     4021 aggcctggga tgacctgctg gggcttacgg aggaacgtaa ggagacccta caggaggacc
     4081 taaaattctt cctgttcctc agccaggcca gggaccaaca gaattggctc agtggcattg
     4141 gtggtatggt atcatcccag gagctagctg aggacttaac tggcacagag atcatgatag
     4201 agcgacacca ggagcatctt gctgaaatgg aggccgaggc tcccaccttc caagccttag
     4261 aagacttcgg tacagatctt ataagcagtg ggcaccgtgc cagccctaaa attgaagaag
     4321 aacttcaagc tgtcaaacta gagagagatg agttggagaa agcttggaaa caacggaaga
     4381 agatgctaga tcagtgtctt gaattgcagt ttttccgagg gaactgtgat caggctgaga
     4441 gctggatggt ggtacgtgag aattacctaa ggtcagatga taagggttcc ttagacagtc
     4501 tggaggcctt gatgaagaaa cgtgatgatt tggacaaagc aatcactgcc caggaaaata
     4561 agatcactga actagaactt tttgctgagc agctcatagc tgatgaccac tatgcccagg
     4621 aagagatttc tgctcggcgc caacgggtac tagacagatg gaaagctctc aaagaacagc
     4681 tgattgctga gcgaacgaaa cttggagact atgctgacct aaaacaattc taccatgacc
     4741 tcaaggacca agaagaatgg atcagtgaga tgctgcccat agcctgtgat gaatcttaca
     4801 aagaccccac caacattcag agaaaatatc tgaagcacaa gacctttgaa aatgaggtct
     4861 atggccgagc tgaacaggtg aaaggagtca tcaccttggg gaacactctg attgagagga
     4921 gggcatgtga tggcaatgaa gagaccatga agggtcaagt agaagagttg gagaaaaact
     4981 gggactactt gtttgagaga acaattgaca aaggacagaa gctcaacgaa gctagtcgcc
     5041 agcagaggtt caacacaggc atccgggact ttgagttctg gctctcagag gcagagacac
     5101 tgctgtccat gaaagatcac gccagggact tggcttcggc aggaaacttg ctaaagaagc
     5161 atcagctatt ggaaacagag atgttggccc gaaaggatgc actcaaggac ctgaatacct
     5221 tggctgcaga tctgatctcc agcgggacct tcaatactga ccagattgtg gagaaaaggg
     5281 ataatgtcaa cgagcgcttc ctgaatgtcc agaaattggc agctgaacat catgagaaac
     5341 tgaaagaggc ttatgccttg ttccagttct tccaggacct agacaatgag gaattctgga
     5401 tagaggagaa gttggtacga gtgcgatccc aggattatgg gagggatctg cagggggttc
     5461 agaacttact gaagaagcac aaacgcctag aaggggagtt ggtgacacat gaacccatca
     5521 tccagaatgt gctggatatg gcggagaggc tgggagacaa ggctgccgtg gggcgagagg
     5581 agatccagga gaggctgaat cagtttgttc aacactggga ccagctcaaa gagttgacca
     5641 aggctcgagg gattcggctg ggagagtccc tagaatactt ggaattcatg gagaatgctg
     5701 aggaggagga agcttggatc agtgaaaagg aagctatggt tacccaaggg gattctggag
     5761 acactttggc tgctactcaa agcttgctaa agaaactcga agctttggag aatgacttcg
     5821 ctgtccatga gatccgagtg caaaatgtgt atgctcaagg agaagacatc ctgagcaagg
     5881 aggaaagtca gcataaagag aaggtttcta ccaagataga ggctctaaaa gaaaagaccc
     5941 cttctctggc caaggcaatg gctgcttgga agttacaact agaagatgat tatgactttc
     6001 agcagttcaa ctggaaggct gatgtggttg aggcctggat agctgagaaa gaaacaagcc
     6061 tgaagaccaa tggcaatggt gcagacctcg ctgccttcct cactctcctg gcaaagcagg
     6121 acacactgca tgccagtctg cagagtttcc agcaagagag actgtctgag ataactgacc
     6181 tgaagaacca actggtggct gctgagcaca gccagactga agccattaaa gagcgccatg
     6241 ctgccctgct gaggctctgg gaacagctgc tggaagcttc tgaagcccac agacaggaat
     6301 tgctggaaaa acagctgccc ctacagaagg ccgaggatct attcatggaa tttgcacaca
     6361 aggcttcagc tttcaacaac tggtgtgaga atgctgagga ggacctgtca gagcctgtgc
     6421 actgtgtctc actggatgca attcagcggc tgaagaagga ccatgaggac ttcttggcct
     6481 ccttggcaag ggcccaagga gacttcaact atttgctaga gctagaccag cagattaagg
     6541 ccttaaatgt gtcctctagt ccctatacgt ggttaacagt ggaggtgcta gaaaggatct
     6601 ggaatcacct atctgacatc gtcaaggaaa gggagcagga gctggaaaag gaagagtcaa
     6661 gacaggtcaa gaactttgag atgtgccaag aatttgaaca gaatgccagt gccttccttg
     6721 attggatcgt gcagaccaga ttcctgatct ggacctccat atccagggat tattttctgg
     6781 atggatcttt gctaaaagaa acaggaactc tagaatccca gctggaagca aataaaagga
     6841 agcagaagga gatccaggca atgaagcgta agctgaccaa gattgaggac ctgggggaaa
     6901 acttagaaga ggctctggtc ctggacatta aatacagcac cattgggctg gctcagcagt
     6961 gggaccagct ctaccagctt gggatgagaa ggcaacacag tctggaacaa cagatccaag
     7021 ccagagacat cactggtctg agtgaggaga cactacagga gtttgaaaca gccttcaggc
     7081 actttgatga gaatttgaca ggtcgcttaa gtcacaaaga tttccggtcc tgcctgagag
     7141 ggctcaatta ctacttgccc atggtggagg aaggtgaacc tgagcccaag tttgagaaat
     7201 tcctggatgc tgttgatcca gggagaaagg gctatatctc acaaaccgac tataccgact
     7261 tcctgatcgt caaggagtca gagaacatca agtccagcga tgaactagag gatgctttcc
     7321 aagccctggc agagggcaag gcctatatta ccaaagagga catgaagcag gccctaaccc
     7381 cagaacaagt gtcattctgt gcctcacata tgcagcaata catggaccca cggggccgaa
     7441 gccagcctgc tggctatgat tatgttggct tcatcagttc ctactttggc aagtgataag
     7501 cagctattcc tgggtcagag aatcttgatg ttgtgggaag tattggggga tgtaggagac
     7561 aggcgagtac agagggtgga aagatagtcg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     7621 tggggtgtgt gtgtgtgttt tacatttatt gcaggacctg aaaaaattct caggcttggg
     7681 agataaaggc attaataaaa ttggaggaga ggaggccatg ggtttgtttt atatgcaact
     7741 agtcactgct gaggggtatt aaacaaggtc tctatttttc gtttgttgag ttctacctat
     7801 ccttattatt ttgtgttttt ttctgattat agaataaagt atttcctttc aaaaaaa
//
LOCUS       XM_032653005            7863 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spectrin alpha, erythrocytic 1 (SPTA1),
            transcript variant X4, mRNA.
ACCESSION   XM_032653005
VERSION     XM_032653005.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7863
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7863
                     /gene="SPTA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764384"
     CDS             276..7502
                     /gene="SPTA1"
                     /codon_start=1
                     /product="spectrin alpha chain, erythrocytic 1 isoform X2"
                     /protein_id="XP_032508896.1"
                     /db_xref="GeneID:116764384"
                     /translation="MESGGPKVLETAEEIQERRQEVLTRYRRFKELVAERGQKLEDSY
                     YYQVFIRDADDLEKWILEKIKIAGDKSYEDPTNIQGKYQKHESFEAEVQAKSRVIPEL
                     EETRKIRFPEGHFAHEDTKVLLEELSHLWDLLLELTQEKSTLLLRALKLQQYLQECAD
                     ILEWIGDKEAIVTSVELGEDWERTEVLHKKFEDFQADLAVRKERLNGVNQYANECAEE
                     KHPELPLIQSKQEEVNAAWERLHGLALQRQKKLSSAADLQRFKRDVTEAIQWIKEKEP
                     QVTSEDYGKDLVNSEALFHSHKTLERNLAVMNDKVKELCAKADKLKLSHPSDAAQIQQ
                     MKEDLVSNWGHIRTLATSRYEKLQASYRYQRFLSDYDELSGWMKEKTALINADELPTD
                     VTGGEALLDRHQQHKHEIDSYDDRFQSANETGQALLDASHEASDEVMDKMAVLTSHWD
                     ALLELWDKRWQQYEQCLELHLFYRDSEQVDSWMSRQEAFLENEDLGNSLGSVEALLQK
                     HDDFEEAFTAQEEKITTLDKTATKLIDNDHYDSENIAAIRDGLLARQNALRERAATRR
                     RLLEDSLLLQQLYQDSDDLKNWINKKKKLADDEDYKDTQNLKSQVQKQQVFEEELAAN
                     EIQLNNIQKTGQEMIESNHYASESVDARLSEVAKLWTELLEATAQKGTQLYEANKQLQ
                     FENNAEDLKHWLEEVEWQARSEDYGKGLADIQNLLRKHGLLESAMAARQDQVDTLTDL
                     AAYIEELGHPNAGDVRARQESLVSRFEDLKKQLANRKNKLIDLLLLHQICRDTEDEEA
                     WIQETEPSAASTYLGKDLIASKNLLNRHQVIQANIANHEPRIQVITERGNKMVEEGHF
                     AAEDVASRVKSLNENMESLQARAARRQNDLEANVQFQQYLADLHEAEAWIREREPIVD
                     NTNYGADEEAAGALLKKHEAFLVDLKAFGNSMQALRDQAEACQQQQAAPVEEAAREER
                     VVALYDFQARSPREVTMKKDDILTLLSSINKDWWKVEADDHQGFVPAVYVRKLARDEF
                     PMLPQRRREEPGNITQRQEQIENQYLSLLDRAEERRRHLLQRYNEFLLAYEAGDMLDW
                     IREKKAENSGVELDDVWELQKKFDEFQMDLKTNEPRLRDINKVADDLQFEELLTPEGA
                     QIQQELNARWGSLQRLAEEQRQLLGSAHAVQMFHREADDTKEQIEKKCQALSAADPGS
                     DLFSVQALQRQHEGFERDLIPLEEKVAVLGETADRLSESHPDATDDLQRQRLELNQAW
                     DDLLGLTEERKETLQEDLKFFLFLSQARDQQNWLSGIGGMVSSQELAEDLTGTEIMIE
                     RHQEHLAEMEAEAPTFQALEDFGTDLISSGHRASPKIEEELQAVKLERDELEKAWKQR
                     KKMLDQCLELQFFRGNCDQAESWMVVRENYLRSDDKGSLDSLEALMKKRDDLDKAITA
                     QENKITELELFAEQLIADDHYAQEEISARRQRVLDRWKALKEQLIAERTKLGDYADLK
                     QFYHDLKDQEEWISEMLPIACDESYKDPTNIQRKYLKHKTFENEVYGRAEQVKGVITL
                     GNTLIERRACDGNEETMKGQVEELEKNWDYLFERTIDKGQKLNEASRQQRFNTGIRDF
                     EFWLSEAETLLSMKDHARDLASAGNLLKKHQLLETEMLARKDALKDLNTLAADLISSG
                     TFNTDQIVEKRDNVNERFLNVQKLAAEHHEKLKEAYALFQFFQDLDNEEFWIEEKLVR
                     VRSQDYGRDLQGVQNLLKKHKRLEGELVTHEPIIQNVLDMAERLGDKAAVGREEIQER
                     LNQFVQHWDQLKELTKARGIRLGESLEYLEFMENAEEEEAWISEKEAMVTQGDSGDTL
                     AATQSLLKKLEALENDFAVHEIRVQNVYAQGEDILSKEESQHKEKVSTKIEALKEKTP
                     SLAKAMAAWKLQLEDDYDFQQFNWKADVVEAWIAEKETSLKTNGNGADLAAFLTLLAK
                     QDTLHASLQSFQQERLSEITDLKNQLVAAEHSQTEAIKERHAALLRLWEQLLEASEAH
                     RQELLEKQLPLQKAEDLFMEFAHKASAFNNWCENAEEDLSEPVHCVSLDAIQRLKKDH
                     EDFLASLARAQGDFNYLLELDQQIKALNVSSSPYTWLTVEVLERIWNHLSDIVKEREQ
                     ELEKEESRQVKNFEMCQEFEQNASAFLDWIVQTRDYFLDGSLLKETGTLESQLEANKR
                     KQKEIQAMKRKLTKIEDLGENLEEALVLDIKYSTIGLAQQWDQLYQLGMRRQHSLEQQ
                     IQARDITGLSEETLQEFETAFRHFDENLTGRLSHKDFRSCLRGLNYYLPMVEEGEPEP
                     KFEKFLDAVDPGRKGYISQTDYTDFLIVKESENIKSSDELEDAFQALAEGKAYITKED
                     MKQALTPEQVSFCASHMQQYMDPRGRSQPAGYDYVGFISSYFGK"
     misc_feature    402..419
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    411..716
                     /gene="SPTA1"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    723..1358
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    1035..1052
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    1359..1994
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    1671..1688
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    1992..2297
                     /gene="SPTA1"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    2310..2939
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2622..2639
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2946..3797
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    3192..3347
                     /gene="SPTA1"
                     /note="Src homology 3 domain of Alpha Spectrin; Region:
                     SH3_Alpha_Spectrin; cd11808"
                     /db_xref="CDD:212742"
     misc_feature    order(3204..3206,3210..3212,3219..3221,3285..3290,
                     3327..3329,3333..3338)
                     /gene="SPTA1"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212742"
     misc_feature    3489..3506
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    3804..4433
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4110..4127
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    4434..5066
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4743..4760
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5070..5705
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    5382..5399
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5745..6341
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    6021..6038
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    6372..7022
                     /gene="SPTA1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    6684..6701
                     /gene="SPTA1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    7065..7247
                     /gene="SPTA1"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     Region: EFh; cl08302"
                     /db_xref="CDD:415501"
     misc_feature    order(7092..7094,7098..7100,7104..7106,7125..7127,
                     7221..7223,7227..7229,7233..7235)
                     /gene="SPTA1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238008"
     misc_feature    7290..7496
                     /gene="SPTA1"
                     /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen;
                     pfam08726"
                     /db_xref="CDD:430177"
ORIGIN      
        1 tagctggcgg gattctggcc caagtgaagg gctacttttt ttctttgtct tgccacatat
       61 gtaacgtttc tctcatctct atctgaatta gactagacaa ctacatgtga attgtttctc
      121 tttctctccc tttgtctctc tgtctctctc tctctctctc tctgtgtgtc ttttggatac
      181 attttatttt gacaggttct tgacctttag gaaaagcgta acactttcca aaggaaaccg
      241 atcagcaaga attgtttctt gattcttaag aggctatgga gagtggtggg ccaaaggtgc
      301 tggaaacagc agaagagatc caggagagac gtcaggaggt gttgacccgg taccggaggt
      361 tcaaggaact ggttgctgag aggggtcaga agcttgaaga ttcctattat taccaggttt
      421 tcatacgaga cgcagatgac ctcgagaaat ggatcttgga gaaaatcaag attgcaggcg
      481 ataaaagcta tgaagaccca actaacatac aggggaaata tcagaagcat gaatcctttg
      541 aagcagaggt gcaagcaaaa tcgagggtca ttcctgagct ggaagaaacc aggaaaattc
      601 gatttcctga ggggcatttt gcccatgagg acaccaaggt ccttctggag gaactcagcc
      661 acctgtggga cctgcttctg gagctgactc aagagaagag caccctgctg ctgcgggccc
      721 tgaagcttca gcagtactta caggagtgtg ctgacatctt ggagtggatt ggagacaagg
      781 aggctatagt gacatcagtg gagctgggtg aggactggga gcgcacagag gttctgcata
      841 agaagtttga agatttccaa gcagatctgg cagttcgaaa ggagaggttg aatggagtga
      901 accaatatgc caatgagtgt gctgaggaaa agcatcctga gctgccctta attcagtcaa
      961 agcaggagga agtgaatgca gcctgggagc ggctccatgg tctggctctc caacgacaga
     1021 aaaagctgtc cagcgctgca gacctccagc gattcaaaag ggatgtgact gaagccatcc
     1081 agtggattaa agagaaggag cctcaagtca cctctgaaga ctatggcaaa gaccttgtga
     1141 actctgaggc actgtttcac agtcacaaga cacttgagag gaaccttgca gtcatgaatg
     1201 acaaggtgaa ggagttatgt gccaaagcag acaagttgaa gctttcccat ccttcagatg
     1261 cagcgcagat ccagcagatg aaagaggatc tggtctccaa ctgggggcac attcgcacct
     1321 tggctaccag cagatatgaa aagctgcagg cttcttatag gtaccagcgg ttcttatctg
     1381 actatgatga gctctcaggc tggatgaagg agaagactgc tttgatcaat gctgatgagc
     1441 tgcccacaga tgtgactggt ggggaagccc tactggacag gcatcagcag cataagcatg
     1501 agattgactc ttatgatgac cgatttcaat ctgctaatga gactggtcaa gccctgctgg
     1561 atgccagtca tgaagcatct gatgaagtca tggataagat ggcagtactt acctcccatt
     1621 gggatgctct gctggaactg tgggacaagc gttggcagca gtatgagcag tgcctggaac
     1681 tacacctctt ctaccgtgac agtgagcaag tggacagttg gatgagtaga caagaggcct
     1741 tcctggaaaa tgaggacttg ggaaactcct tgggcagtgt tgaagccctt cttcagaagc
     1801 atgatgactt tgaggaagcc tttactgccc aggaggagaa gatcacaacc ttagacaaga
     1861 ctgcaaccaa actgattgat aatgaccatt atgattcaga gaacattgct gctatccggg
     1921 atgggctgtt ggcccgacag aatgctttac gtgaaagggc tgccactcga cgcagattgc
     1981 tggaggattc attgcttctg cagcaactgt atcaggactc agatgaccta aagaactgga
     2041 taaacaagaa gaaaaagttg gcagatgatg aagattacaa ggatacacag aacttgaaga
     2101 gccaggttca aaagcagcaa gtctttgaag aagaattggc agctaatgag atccagctca
     2161 ataacataca gaaaactggc caggagatga ttgagagcaa tcattatgcc tctgaaagtg
     2221 tggatgctcg tttgagtgaa gttgccaaac tctggacgga attgctggag gctacagcac
     2281 agaaagggac tcagttatat gaagctaaca agcagctgca atttgaaaat aatgcagaag
     2341 acctgaagca ctggctggag gaggtggaat ggcaggctag gtctgaggat tatgggaaag
     2401 gtctggctga tatacagaat ctgctcagga aacacggcct cctggagtct gccatggctg
     2461 ctcgtcagga tcaggtggac accctcacag acctggcagc atatattgaa gaactaggcc
     2521 atcccaatgc tggggacgta cgggcaaggc aggagtccct ggtgtctcgg tttgaagacc
     2581 tgaaaaagca gctggccaac cggaagaata agctcattga ccttctcctc ctgcaccaga
     2641 tctgcagaga cacagaggat gaggaggcct ggatccaaga gactgaacct tctgcagctt
     2701 ccacctacct tggcaaggac ctgattgcct ccaagaatct tctgaacaga caccaagtca
     2761 tccaggctaa tattgccaac catgagccac gcatccaagt gataacagag aggggaaaca
     2821 aaatggtaga ggaaggacac tttgctgcag aagatgtggc ctctagggtc aagagtttga
     2881 atgagaatat ggaatctctc caggctcgag ctgctagacg gcagaatgat cttgaagcca
     2941 atgtccagtt ccagcaatac ctagctgacc tgcatgaagc agaagcatgg attagagaga
     3001 gggaacctat agtagacaac actaactatg gggctgatga agaagcagct ggggctcttc
     3061 taaagaagca tgaggccttt ctagtggatc tgaaggcttt tggaaacagt atgcaagctc
     3121 ttcgggatca ggcagaagcc tgccagcaac aacaggctgc acctgtggag gaagctgctc
     3181 gagaagagag ggttgtggcc ttatatgact tccaggcccg cagcccccga gaagtcacca
     3241 tgaagaaaga tgatatctta acactgctca gttccatcaa caaggactgg tggaaagtgg
     3301 aagctgatga tcaccagggc tttgtgccag ctgtctacgt caggaaactt gcccgtgatg
     3361 agtttcctat gctcccgcaa cggaggcgag aagaaccagg caacatcacc cagcgtcagg
     3421 aacagattga aaaccagtac ctttctctcc tggatcgggc agaagaacgc agacgtcatc
     3481 tactgcaacg ttacaatgag tttttgctgg cctatgaggc aggagacatg ctggactgga
     3541 tccgagagaa aaaggcagaa aacagcgggg tggaattaga tgatgtttgg gagctgcaga
     3601 aaaagtttga tgagttccaa atggatttga agaccaatga gcctcggctg agggatatca
     3661 acaaggtggc tgatgatctt caatttgaag agcttctgac accagaagga gctcaaatac
     3721 agcaggagtt gaatgcccgc tgggggtcct tgcagaggct ggcagaggaa cagcgccagc
     3781 tcttgggcag tgcccatgct gtccaaatgt ttcacagaga agcagatgac accaaggaac
     3841 agattgagaa gaagtgccag gccctcagtg ctgctgaccc tggctcagac ttgttcagtg
     3901 ttcaggccct tcagcgacag cacgagggct ttgagagaga cctcataccc ctggaggaaa
     3961 aggtggctgt actgggggag acagcagatc ggctcagtga gtcccaccca gatgccaccg
     4021 atgacctgca aaggcagcga ctggagctga atcaggcctg ggatgacctg ctggggctta
     4081 cggaggaacg taaggagacc ctacaggagg acctaaaatt cttcctgttc ctcagccagg
     4141 ccagggacca acagaattgg ctcagtggca ttggtggtat ggtatcatcc caggagctag
     4201 ctgaggactt aactggcaca gagatcatga tagagcgaca ccaggagcat cttgctgaaa
     4261 tggaggccga ggctcccacc ttccaagcct tagaagactt cggtacagat cttataagca
     4321 gtgggcaccg tgccagccct aaaattgaag aagaacttca agctgtcaaa ctagagagag
     4381 atgagttgga gaaagcttgg aaacaacgga agaagatgct agatcagtgt cttgaattgc
     4441 agtttttccg agggaactgt gatcaggctg agagctggat ggtggtacgt gagaattacc
     4501 taaggtcaga tgataagggt tccttagaca gtctggaggc cttgatgaag aaacgtgatg
     4561 atttggacaa agcaatcact gcccaggaaa ataagatcac tgaactagaa ctttttgctg
     4621 agcagctcat agctgatgac cactatgccc aggaagagat ttctgctcgg cgccaacggg
     4681 tactagacag atggaaagct ctcaaagaac agctgattgc tgagcgaacg aaacttggag
     4741 actatgctga cctaaaacaa ttctaccatg acctcaagga ccaagaagaa tggatcagtg
     4801 agatgctgcc catagcctgt gatgaatctt acaaagaccc caccaacatt cagagaaaat
     4861 atctgaagca caagaccttt gaaaatgagg tctatggccg agctgaacag gtgaaaggag
     4921 tcatcacctt ggggaacact ctgattgaga ggagggcatg tgatggcaat gaagagacca
     4981 tgaagggtca agtagaagag ttggagaaaa actgggacta cttgtttgag agaacaattg
     5041 acaaaggaca gaagctcaac gaagctagtc gccagcagag gttcaacaca ggcatccggg
     5101 actttgagtt ctggctctca gaggcagaga cactgctgtc catgaaagat cacgccaggg
     5161 acttggcttc ggcaggaaac ttgctaaaga agcatcagct attggaaaca gagatgttgg
     5221 cccgaaagga tgcactcaag gacctgaata ccttggctgc agatctgatc tccagcggga
     5281 ccttcaatac tgaccagatt gtggagaaaa gggataatgt caacgagcgc ttcctgaatg
     5341 tccagaaatt ggcagctgaa catcatgaga aactgaaaga ggcttatgcc ttgttccagt
     5401 tcttccagga cctagacaat gaggaattct ggatagagga gaagttggta cgagtgcgat
     5461 cccaggatta tgggagggat ctgcaggggg ttcagaactt actgaagaag cacaaacgcc
     5521 tagaagggga gttggtgaca catgaaccca tcatccagaa tgtgctggat atggcggaga
     5581 ggctgggaga caaggctgcc gtggggcgag aggagatcca ggagaggctg aatcagtttg
     5641 ttcaacactg ggaccagctc aaagagttga ccaaggctcg agggattcgg ctgggagagt
     5701 ccctagaata cttggaattc atggagaatg ctgaggagga ggaagcttgg atcagtgaaa
     5761 aggaagctat ggttacccaa ggggattctg gagacacttt ggctgctact caaagcttgc
     5821 taaagaaact cgaagctttg gagaatgact tcgctgtcca tgagatccga gtgcaaaatg
     5881 tgtatgctca aggagaagac atcctgagca aggaggaaag tcagcataaa gagaaggttt
     5941 ctaccaagat agaggctcta aaagaaaaga ccccttctct ggccaaggca atggctgctt
     6001 ggaagttaca actagaagat gattatgact ttcagcagtt caactggaag gctgatgtgg
     6061 ttgaggcctg gatagctgag aaagaaacaa gcctgaagac caatggcaat ggtgcagacc
     6121 tcgctgcctt cctcactctc ctggcaaagc aggacacact gcatgccagt ctgcagagtt
     6181 tccagcaaga gagactgtct gagataactg acctgaagaa ccaactggtg gctgctgagc
     6241 acagccagac tgaagccatt aaagagcgcc atgctgccct gctgaggctc tgggaacagc
     6301 tgctggaagc ttctgaagcc cacagacagg aattgctgga aaaacagctg cccctacaga
     6361 aggccgagga tctattcatg gaatttgcac acaaggcttc agctttcaac aactggtgtg
     6421 agaatgctga ggaggacctg tcagagcctg tgcactgtgt ctcactggat gcaattcagc
     6481 ggctgaagaa ggaccatgag gacttcttgg cctccttggc aagggcccaa ggagacttca
     6541 actatttgct agagctagac cagcagatta aggccttaaa tgtgtcctct agtccctata
     6601 cgtggttaac agtggaggtg ctagaaagga tctggaatca cctatctgac atcgtcaagg
     6661 aaagggagca ggagctggaa aaggaagagt caagacaggt caagaacttt gagatgtgcc
     6721 aagaatttga acagaatgcc agtgccttcc ttgattggat cgtgcagacc agggattatt
     6781 ttctggatgg atctttgcta aaagaaacag gaactctaga atcccagctg gaagcaaata
     6841 aaaggaagca gaaggagatc caggcaatga agcgtaagct gaccaagatt gaggacctgg
     6901 gggaaaactt agaagaggct ctggtcctgg acattaaata cagcaccatt gggctggctc
     6961 agcagtggga ccagctctac cagcttggga tgagaaggca acacagtctg gaacaacaga
     7021 tccaagccag agacatcact ggtctgagtg aggagacact acaggagttt gaaacagcct
     7081 tcaggcactt tgatgagaat ttgacaggtc gcttaagtca caaagatttc cggtcctgcc
     7141 tgagagggct caattactac ttgcccatgg tggaggaagg tgaacctgag cccaagtttg
     7201 agaaattcct ggatgctgtt gatccaggga gaaagggcta tatctcacaa accgactata
     7261 ccgacttcct gatcgtcaag gagtcagaga acatcaagtc cagcgatgaa ctagaggatg
     7321 ctttccaagc cctggcagag ggcaaggcct atattaccaa agaggacatg aagcaggccc
     7381 taaccccaga acaagtgtca ttctgtgcct cacatatgca gcaatacatg gacccacggg
     7441 gccgaagcca gcctgctggc tatgattatg ttggcttcat cagttcctac tttggcaagt
     7501 gataagcagc tattcctggg tcagagaatc ttgatgttgt gggaagtatt gggggatgta
     7561 ggagacaggc gagtacagag ggtggaaaga tagtcgtgtg tgtgtgtgtg tgtgtgtgtg
     7621 tgtgtgtggg gtgtgtgtgt gtgttttaca tttattgcag gacctgaaaa aattctcagg
     7681 cttgggagat aaaggcatta ataaaattgg aggagaggag gccatgggtt tgttttatat
     7741 gcaactagtc actgctgagg ggtattaaac aaggtctcta tttttcgttt gttgagttct
     7801 acctatcctt attattttgt gtttttttct gattatagaa taaagtattt cctttcaaaa
     7861 aaa
//
LOCUS       XM_032653012            3315 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hook microtubule tethering protein 1
            (HOOK1), transcript variant X1, mRNA.
ACCESSION   XM_032653012
VERSION     XM_032653012.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3315
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3315
                     /gene="HOOK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764403"
     CDS             133..2319
                     /gene="HOOK1"
                     /codon_start=1
                     /product="protein Hook homolog 1 isoform X1"
                     /protein_id="XP_032508903.1"
                     /db_xref="GeneID:116764403"
                     /translation="MEETQPLPQSELPLCDSLIIWLQTFNTAAPCQDVKQLTNGVAMA
                     QVLHQIDVAWFNESWLSRIKEDIGDNWRIKASNLKKVLQGIMGYYSEFLGQQISEELI
                     PDLNQITECSDSVELGRLLQLILGCAVNCEKKQEHIQNIMTLEESVQHVVMTAIQELM
                     SKEIVSSPTNDAVGELEQQLKRALEELQEALAEKEELRQRCQELDMQVTALQDEKNSL
                     VSENEMMSEKLDQLDGSFDDPNTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCE
                     ELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQKLQDLN
                     DLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSETKRA
                     DTLAFEMKRLEEKHEALLKEKERLIEQLDTLKETNEELRCSQVQQDHLNQTDASATKS
                     YENLAAEIMPVEYREVFIRLQHENKMLRLQQEGTENERIEELQEQLEQKHRKMNELET
                     EQRLSKEQIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQK
                     KQELIEDLQPDVNQNVQKINELEAALQKKDEDMKAMEERYKMYLEKARNVIKTLDPKL
                     NPASAEIMLLRKQLAEKERRIEILESECKVAKFRDYEEKLIVSAWYNKSLAFQKLGME
                     SRLVSGSGAYRDTGACAPARSFLAQQRHITSTRRNLSVKVPATTSD"
     misc_feature    172..621
                     /gene="HOOK1"
                     /note="Hook domain found in protein Hook 1 (Hook1) and
                     similar proteins; Region: HkD_Hook1; cd22225"
                     /db_xref="CDD:411796"
     misc_feature    order(517..519,535..537,544..549,553..558,568..570,
                     577..582,586..591,598..603,610..612)
                     /gene="HOOK1"
                     /note="putative LIC-binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:411796"
     misc_feature    688..2289
                     /gene="HOOK1"
                     /note="HOOK protein coiled-coil region; Region: HOOK;
                     pfam05622"
                     /db_xref="CDD:461694"
ORIGIN      
        1 agcggcgcgg tcgctgggcc tggctaccga gctttcctga cgggcgagca ggtcctcgac
       61 accggcgcct ggcggagcgc ggggaggagg gaggttttgg tgtcagcggt gtagttgacg
      121 gcagtcccgg ccatggaaga gacgcagccg cttccgcagt ccgagctgcc actgtgcgac
      181 agcctcatca tctggctgca gacattcaat actgctgcac cttgtcagga tgtgaaacag
      241 ctgactaatg gagttgccat ggcacaagtt cttcatcaaa ttgatgtagc ttggttcaat
      301 gaatcttggt taagccgaat taaagaggat atcggtgaca actggcgaat aaaggctagt
      361 aatttaaaga aggtacttca aggaattatg ggttattaca gtgagttttt gggacaacag
      421 atttctgaag aacttatccc tgatttaaac caaataactg aatgttcaga ttctgtggag
      481 cttgggaggt tgctccagct tattttaggt tgtgctgtca actgtgaaaa gaagcaagaa
      541 catattcaaa atataatgac actggaagag tctgttcaac atgtggtcat gactgccatt
      601 caagagttga tgagtaaaga aatagtgagc tctcctacaa atgatgctgt tggagaatta
      661 gagcaacagc ttaaaagggc cctggaagaa cttcaggaag cactagcaga aaaagaagaa
      721 ctgaggcaaa gatgccaaga actagatatg caggtgacag cacttcaaga tgaaaagaat
      781 tcactagttt ctgagaatga gatgatgagt gaaaaacttg accagttgga tggctctttt
      841 gatgatccaa atacaatggt tgcaaaaaag tattttcatg cacagttgca actagaacaa
      901 ttacaggaag aaaacttcag gctcgaagct gcaaaagatg attaccgtgt tcactgtgaa
      961 gaacttgaaa agcaattaat tgaatttcaa cataggaatg atgagttgac tagtcttgct
     1021 gaggaaacaa gagccctgaa agatgaaata gatgttctta gggctacctc tgataaagca
     1081 aataaactgg agtcaacagt tgagatatat cgtcagaagc tccaagatct gaatgacctt
     1141 cgcaagcagg tgaaaacttt acaggaaaca aacatgatgt atatgcataa tacagtcagc
     1201 ctagaagaag aattaaagaa ggcaaatgca gcacgtacac aattagaaac atacaagaga
     1261 caggttcagg atcttcacgt taaactttcc tctgaaacca aaagggcgga cacactagca
     1321 tttgaaatga agcggcttga agaaaaacac gaagctttac ttaaggaaaa agagagacta
     1381 atagaacagc ttgatactct gaaagaaaca aatgaagagc ttcgatgttc acaagtacaa
     1441 caggatcacc taaaccaaac agatgcatct gctacaaaaa gctatgagaa tcttgctgct
     1501 gagattatgc cagtggagta tagggaggtg tttattcgac tgcaacatga aaataagatg
     1561 cttcggttac agcaggaagg tactgagaat gaacgtattg aagaacttca ggaacagctg
     1621 gaacagaagc accgcaagat gaatgaattg gaaactgagc agaggctgag caaagaacaa
     1681 attcgagaat tgcagcagca gattgaggac ctccagaagt ctttgcaaga acaaggctcc
     1741 aagtctgaag gagaaagttc cagcaaacta aagcagaagt tggaagctca tatggaaaaa
     1801 ctaacggagg tccatgaaga attacagaag aaacaagagc tcattgaaga cctccagcca
     1861 gatgtaaacc agaatgtaca aaagatcaac gaacttgaag ctgctcttca gaagaaagat
     1921 gaagatatga aagcaatgga ggaaagatac aaaatgtact tagagaaagc aagaaatgta
     1981 ataaaaactt tagaccccaa gttaaatcca gcatcagctg aaataatgct acttagaaag
     2041 cagttggcag agaaagagag aagaattgaa attctggaga gtgaatgtaa agtagcaaaa
     2101 ttccgtgatt atgaagaaaa actcattgtt tctgcctggt ataataagag tctagcattc
     2161 cagaaattag ggatggaatc tagactcgtg agcggcagtg gtgcttacag agacacgggg
     2221 gcttgtgctc ctgcccggtc tttcctagca cagcagcggc acatcaccag caccagaaga
     2281 aatctctctg ttaaagttcc tgctacgaca tctgattaaa ctgcaaaaga acacgtaaac
     2341 agaagtgccc ttaaaatatt ttgtatcttt caactaacta ccaggttgga aaagtagtgt
     2401 atgattctgg atatcagcta ttttaaaatc aaaatgcata aaattagtct tgccagctga
     2461 ttttgaaaac agaatgtgaa attagctatc tggggaagca tgtgtgaata aatggaagat
     2521 ataataaggc aaaaatctca aacatttgtc ttttgagagt attatattat ttcaaattga
     2581 ctttgtatat tttagtttaa tgttttcggt tggaccagta actaatttgc aatgtgtaat
     2641 cggtaatatg taatctaaaa atacatctat tttagtgttt tggtataaaa atagttgtga
     2701 aaagaaacag ttgtgaggta ggcacgtgga gaactataca agagttatat tttttgactt
     2761 gacctacaca aggcattacc tctgtcctct aattctgttg ctgaatgggt atattttatc
     2821 atgtaatgga agatataaca tttggaagat tggactatta aaatgacttc tccatagaag
     2881 tgactacttg gcaattttgc agatttagaa gaggtcacag ttctcatatg tacctactat
     2941 aaactaaggc ttctgtacag aatggttgaa acgttaaggg tatagaaatg aactgacttt
     3001 aagagatgac tttctgatgg gaagcaagct aaaaaatata cttcgtgtga aatgcccaca
     3061 ctattttaat ataattaatg aagattacaa ttaattatta ttacttttaa gcatagaatt
     3121 atcaaggttt ctgctaaaaa aaaaaagatg cattagtagt tttgcctctt cactgaaaag
     3181 agatagtgaa gtagaggaac aatttggaat cacttttttt tttttttttt gcggtacgcg
     3241 agcctctcac tgttgttgtg gcctttcccg ttgcggagca caggctccgg aagcgcaggc
     3301 tcatgggccc agccg
//
LOCUS       XM_032653020            3249 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hook microtubule tethering protein 1
            (HOOK1), transcript variant X2, mRNA.
ACCESSION   XM_032653020
VERSION     XM_032653020.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3249
                     /gene="HOOK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764403"
     CDS             193..2253
                     /gene="HOOK1"
                     /codon_start=1
                     /product="protein Hook homolog 1 isoform X2"
                     /protein_id="XP_032508911.1"
                     /db_xref="GeneID:116764403"
                     /translation="MAQVLHQIDVAWFNESWLSRIKEDIGDNWRIKASNLKKVLQGIM
                     GYYSEFLGQQISEELIPDLNQITECSDSVELGRLLQLILGCAVNCEKKQEHIQNIMTL
                     EESVQHVVMTAIQELMSKEIVSSPTNDAVGELEQQLKRALEELQEALAEKEELRQRCQ
                     ELDMQVTALQDEKNSLVSENEMMSEKLDQLDGSFDDPNTMVAKKYFHAQLQLEQLQEE
                     NFRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANK
                     LESTVEIYRQKLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKR
                     QVQDLHVKLSSETKRADTLAFEMKRLEEKHEALLKEKERLIEQLDTLKETNEELRCSQ
                     VQQDHLNQTDASATKSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGTENERIEEL
                     QEQLEQKHRKMNELETEQRLSKEQIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKL
                     EAHMEKLTEVHEELQKKQELIEDLQPDVNQNVQKINELEAALQKKDEDMKAMEERYKM
                     YLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKERRIEILESECKVAKFRDYEEKLIV
                     SAWYNKSLAFQKLGMESRLVSGSGAYRDTGACAPARSFLAQQRHITSTRRNLSVKVPA
                     TTSD"
     misc_feature    193..555
                     /gene="HOOK1"
                     /note="Hook domain-containing proteins superfamily;
                     Region: HkD_SF; cl41774"
                     /db_xref="CDD:425405"
     misc_feature    order(451..453,502..504,511..516,520..525,532..537,
                     544..546)
                     /gene="HOOK1"
                     /note="LIC-binding interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:411792"
     misc_feature    622..2223
                     /gene="HOOK1"
                     /note="HOOK protein coiled-coil region; Region: HOOK;
                     pfam05622"
                     /db_xref="CDD:461694"
ORIGIN      
        1 gttgacggca gtcccggcca tggaagagac gcagccgctt ccgcagtccg agctgccact
       61 gtgcgacagc ctcatcatct ggaaattctg aagtacttca tacatgacat caatacgttt
      121 gactattagc tgcagacatt caatactgct gcaccttgtc aggatgtgaa acagctgact
      181 aatggagttg ccatggcaca agttcttcat caaattgatg tagcttggtt caatgaatct
      241 tggttaagcc gaattaaaga ggatatcggt gacaactggc gaataaaggc tagtaattta
      301 aagaaggtac ttcaaggaat tatgggttat tacagtgagt ttttgggaca acagatttct
      361 gaagaactta tccctgattt aaaccaaata actgaatgtt cagattctgt ggagcttggg
      421 aggttgctcc agcttatttt aggttgtgct gtcaactgtg aaaagaagca agaacatatt
      481 caaaatataa tgacactgga agagtctgtt caacatgtgg tcatgactgc cattcaagag
      541 ttgatgagta aagaaatagt gagctctcct acaaatgatg ctgttggaga attagagcaa
      601 cagcttaaaa gggccctgga agaacttcag gaagcactag cagaaaaaga agaactgagg
      661 caaagatgcc aagaactaga tatgcaggtg acagcacttc aagatgaaaa gaattcacta
      721 gtttctgaga atgagatgat gagtgaaaaa cttgaccagt tggatggctc ttttgatgat
      781 ccaaatacaa tggttgcaaa aaagtatttt catgcacagt tgcaactaga acaattacag
      841 gaagaaaact tcaggctcga agctgcaaaa gatgattacc gtgttcactg tgaagaactt
      901 gaaaagcaat taattgaatt tcaacatagg aatgatgagt tgactagtct tgctgaggaa
      961 acaagagccc tgaaagatga aatagatgtt cttagggcta cctctgataa agcaaataaa
     1021 ctggagtcaa cagttgagat atatcgtcag aagctccaag atctgaatga ccttcgcaag
     1081 caggtgaaaa ctttacagga aacaaacatg atgtatatgc ataatacagt cagcctagaa
     1141 gaagaattaa agaaggcaaa tgcagcacgt acacaattag aaacatacaa gagacaggtt
     1201 caggatcttc acgttaaact ttcctctgaa accaaaaggg cggacacact agcatttgaa
     1261 atgaagcggc ttgaagaaaa acacgaagct ttacttaagg aaaaagagag actaatagaa
     1321 cagcttgata ctctgaaaga aacaaatgaa gagcttcgat gttcacaagt acaacaggat
     1381 cacctaaacc aaacagatgc atctgctaca aaaagctatg agaatcttgc tgctgagatt
     1441 atgccagtgg agtataggga ggtgtttatt cgactgcaac atgaaaataa gatgcttcgg
     1501 ttacagcagg aaggtactga gaatgaacgt attgaagaac ttcaggaaca gctggaacag
     1561 aagcaccgca agatgaatga attggaaact gagcagaggc tgagcaaaga acaaattcga
     1621 gaattgcagc agcagattga ggacctccag aagtctttgc aagaacaagg ctccaagtct
     1681 gaaggagaaa gttccagcaa actaaagcag aagttggaag ctcatatgga aaaactaacg
     1741 gaggtccatg aagaattaca gaagaaacaa gagctcattg aagacctcca gccagatgta
     1801 aaccagaatg tacaaaagat caacgaactt gaagctgctc ttcagaagaa agatgaagat
     1861 atgaaagcaa tggaggaaag atacaaaatg tacttagaga aagcaagaaa tgtaataaaa
     1921 actttagacc ccaagttaaa tccagcatca gctgaaataa tgctacttag aaagcagttg
     1981 gcagagaaag agagaagaat tgaaattctg gagagtgaat gtaaagtagc aaaattccgt
     2041 gattatgaag aaaaactcat tgtttctgcc tggtataata agagtctagc attccagaaa
     2101 ttagggatgg aatctagact cgtgagcggc agtggtgctt acagagacac gggggcttgt
     2161 gctcctgccc ggtctttcct agcacagcag cggcacatca ccagcaccag aagaaatctc
     2221 tctgttaaag ttcctgctac gacatctgat taaactgcaa aagaacacgt aaacagaagt
     2281 gcccttaaaa tattttgtat ctttcaacta actaccaggt tggaaaagta gtgtatgatt
     2341 ctggatatca gctattttaa aatcaaaatg cataaaatta gtcttgccag ctgattttga
     2401 aaacagaatg tgaaattagc tatctgggga agcatgtgtg aataaatgga agatataata
     2461 aggcaaaaat ctcaaacatt tgtcttttga gagtattata ttatttcaaa ttgactttgt
     2521 atattttagt ttaatgtttt cggttggacc agtaactaat ttgcaatgtg taatcggtaa
     2581 tatgtaatct aaaaatacat ctattttagt gttttggtat aaaaatagtt gtgaaaagaa
     2641 acagttgtga ggtaggcacg tggagaacta tacaagagtt atattttttg acttgaccta
     2701 cacaaggcat tacctctgtc ctctaattct gttgctgaat gggtatattt tatcatgtaa
     2761 tggaagatat aacatttgga agattggact attaaaatga cttctccata gaagtgacta
     2821 cttggcaatt ttgcagattt agaagaggtc acagttctca tatgtaccta ctataaacta
     2881 aggcttctgt acagaatggt tgaaacgtta agggtataga aatgaactga ctttaagaga
     2941 tgactttctg atgggaagca agctaaaaaa tatacttcgt gtgaaatgcc cacactattt
     3001 taatataatt aatgaagatt acaattaatt attattactt ttaagcatag aattatcaag
     3061 gtttctgcta aaaaaaaaaa gatgcattag tagttttgcc tcttcactga aaagagatag
     3121 tgaagtagag gaacaatttg gaatcacttt tttttttttt ttttgcggta cgcgagcctc
     3181 tcactgttgt tgtggccttt cccgttgcgg agcacaggct ccggaagcgc aggctcatgg
     3241 gcccagccg
//
LOCUS       XM_032653031            1865 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytochrome P450 2J2 (LOC116764420),
            transcript variant X1, mRNA.
ACCESSION   XM_032653031
VERSION     XM_032653031.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1865
                     /gene="LOC116764420"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 8 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764420"
     CDS             47..1555
                     /gene="LOC116764420"
                     /codon_start=1
                     /product="cytochrome P450 2J2 isoform X1"
                     /protein_id="XP_032508922.1"
                     /db_xref="GeneID:116764420"
                     /translation="MLAAVGSLAVAFWTVLRPRTVLLGAVAFLFFADFLKRRRPKNYP
                     PGPLRLPFVGNFFHLDFEKGHLSLQRFVKKYGNLFSLEFGDLPSVIITGLPLIKEVLV
                     HQEQKFLNRPITPIRERVFKKNGLIMSIGQVWKEQRRFALTTLKSFGLGRKSLEERIQ
                     EETHFLIQAMGEENGQPFDPHFKINNAVSNIICSITFGERFDYEDTQFQELLRLLDEV
                     TYLETSMWCQLYNVFPRIMNFLPGPHQMLFRNWEKLKMFVARVIENHKRGWNPAEARD
                     FIDAYLKEIEKHKGSATSSFHEENLIYSTLDLFFAGTETTSTTLRWGLLYMALYPEIQ
                     EKVQAEIDRVLGQSQQPSTAARESMPYTNAVIHEVQRMGNIIPMNVPREVTVDTTLGG
                     YHLPKGTMVLTNLTALHRDPAEWATPDVFNPEHFLENGQFKKREAFLPFSVGKRMCLG
                     EQLARTELFIFFTSLVQKFTFRPPNNEKLSLNFRMSLTISPVSHRLCAVPRA"
     misc_feature    269..1534
                     /gene="LOC116764420"
                     /note="cytochrome P450 family 2, subfamily J; Region:
                     CYP2J; cd20662"
                     /db_xref="CDD:410755"
     misc_feature    order(377..379,422..427,446..448,458..460,968..970,
                     977..982,989..994,1001..1003,1154..1156,1172..1174,
                     1184..1186,1190..1192,1259..1261,1364..1372,1382..1384,
                     1388..1396,1403..1408)
                     /gene="LOC116764420"
                     /note="heme binding site [chemical binding]; other site"
                     /db_xref="CDD:410755"
     misc_feature    order(386..388,425..430,689..691,698..703,710..712,
                     797..799,806..811,818..820,953..955,962..967,974..979,
                     989..991,1172..1174,1184..1186,1505..1510)
                     /gene="LOC116764420"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:410755"
ORIGIN      
        1 accttcgctg gatcagaccg cggaagaggg agccgaggtc gccgccatgc tcgcagcggt
       61 gggctccctg gcggttgcct tctggaccgt tctccgtccc cgcactgtcc tgttgggggc
      121 cgtcgccttt ctcttctttg ctgatttcct caaaaggcgg cgcccgaaga actacccgcc
      181 gggacccctc cgcctgccct tcgtaggcaa cttcttccat ctggactttg agaaggggca
      241 cctgtcgctt cagaggtttg tgaagaaata tgggaacctt tttagcctgg aattcggtga
      301 cttgccttca gttattataa ctggattgcc cttaatcaaa gaagtccttg tccaccagga
      361 gcaaaagttt ttgaaccgcc ctataacccc tattcgagaa cgtgttttta agaaaaatgg
      421 cttgatcatg tccataggcc aggtgtggaa ggaacaaaga aggtttgccc tgacaacact
      481 gaagagcttt ggtttaggaa ggaagagctt agaggagcgc attcaggaag agacccactt
      541 cctcatccag gcaatgggag aggagaacgg acagcctttc gaccctcact tcaaaatcaa
      601 caatgcagtt tccaatatta tttgctccat cacatttggg gagcgctttg actacgagga
      661 cactcagttc caggagctgc tgaggctgct ggatgaggtc acatatctcg agacatcaat
      721 gtggtgccag ctctacaacg tctttccaag gataatgaat ttccttcctg gaccccacca
      781 aatgctcttc aggaactggg agaagctgaa aatgtttgtt gcccgtgtga tcgaaaacca
      841 caagagaggt tggaatcctg ctgaagcaag agacttcatt gatgcttacc tcaaggaaat
      901 agaaaagcat aagggcagtg ctacttcaag tttccacgaa gaaaacctca tctacagcac
      961 cctggacctc ttctttgctg gaacggagac aacttcgacc accctgcgct ggggtctgct
     1021 ctacatggcc ctctaccccg aaatccaaga aaaagtccaa gctgagatcg acagggtgct
     1081 tggccaatca cagcagccga gcacggcagc tcgagagtcc atgccctaca ccaacgctgt
     1141 catccacgag gtgcagagaa tgggaaacat catccccatg aatgtgccca gagaggtgac
     1201 agtggacacc accctgggtg gataccacct gcccaagggg accatggtcc tgaccaacct
     1261 gactgcactg cacagggacc ccgcagagtg ggccaccccc gacgttttca atccggagca
     1321 ttttctggag aatggacagt ttaagaaaag ggaagccttt ctgcctttct cagtaggtaa
     1381 gcggatgtgc cttggagaac agttggcgag aactgagttg tttattttct ttacttccct
     1441 tgtgcaaaaa tttaccttca ggcctccaaa caatgagaag ctgagtctga acttcagaat
     1501 gagtctgacc atctctccag tcagccaccg cctctgtgcc gttcctcggg catgaagttg
     1561 tcagggaggg agaggggaag gaaagcagga agaatggccg tgtcccccca aggcaggagc
     1621 gcctgctcag cagtgaggga acagcatgca gtgcctctga ggacaggtca taggaactgg
     1681 actcagagga aacaggatcc aaaccccagc tttgccatct ccagtggagc cttgagcaaa
     1741 tcaggtatgt tgtgagtgat ttgcctctcc agccaggaaa tgaaaagaga atagtgattc
     1801 cttctctaaa ggaagaattg ctgtaaaaac cagagtgatt tggaaaccat aaagcacatc
     1861 ataaa
//
LOCUS       XR_004352879            1753 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytochrome P450 2J2 (LOC116764420),
            transcript variant X2, misc_RNA.
ACCESSION   XR_004352879
VERSION     XR_004352879.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1753
                     /gene="LOC116764420"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764420"
     misc_RNA        1..1753
                     /gene="LOC116764420"
                     /product="cytochrome P450 2J2, transcript variant X2"
                     /db_xref="GeneID:116764420"
ORIGIN      
        1 aggtcgccgc catgctcgca gcggtgggct ccctggcggt tgccttctgg accgttctcc
       61 gtccccgcac tgtcctgttg ggggccgtcg cctttctctt ctttgctgat ttcctcaaaa
      121 ggcggcgccc gaagaactac ccgccgggac ccctccgcct gcccttcgta ggcaacttct
      181 tccatctgga ctttgagaag gggcacctgt cgcttcagag gtttgtgaag aaatatggga
      241 acctttttag cctggaattc ggtgacttgc cttcagttat tataactgga ttgcccttaa
      301 tcaaagaagt ccttgtccac caggagcaaa agtttttgaa ccgccctata acccctattc
      361 gagaacgtgt ttttaagaaa aatggcttga tcatgtccat aggccaggtg tggaaggaac
      421 aaagaaggtt tgccctgaca acactgaaga gctttggttt aggaaggaag agcttagagg
      481 agcgcattca ggaagagacc cacttcctca tccaggcaat gggagaggag aacggacagc
      541 ctttcgaccc tcacttcaaa atcaacaatg cagtttccaa tattatttgc tccatcacat
      601 ttggggagcg ctttgactac gaggacactc agttccagga gctgctgagg ctgctggatg
      661 aggtcacata tctcgagaca tcaatgtggt gccagctcta caacgtcttt ccaaggataa
      721 tgaatttcct tcctggaccc caccaaatgc tcttcaggaa ctgggagaag ctgaaaatgt
      781 ttgttgcccg tgtgatcgaa aaccacaaga gaggttggaa tcctgctgaa gcaagagact
      841 tcattgatgc ttacctcaag gaaatagaaa agcataaggg cagtgctact tcaagtttcc
      901 acgaagaaaa cctcatctac agcaccctgg acctcttctt tgctggaacg gagacaactt
      961 cgaccaccct gcgctggggt ctgctctaca tggccctcta ccccgaaatc caagaaaaag
     1021 tccaagctga gatcgacagg gtgcttggcc aatcacagca gccgagcacg gcagctcgag
     1081 agtccatgcc ctacaccaac gctgtcatcc acgaggtgca gagaatggga aacatcatcc
     1141 ccatgaatgt gcccagagag gtgacagtgg acaccaccct gggtggatac cacctgccca
     1201 aggggaccat ggtcctgacc aacctgactg cactgcacag ggaccccgca gagtgggcca
     1261 cccccgacgt tttcaatccg gagcattttc tggagaatgg acagtttaag aaaagggaag
     1321 cctttctgcc tttctcagta ggtaagcgga tgtgccttgg agaacagttg gcgagaactg
     1381 agttgtttat tttctttact tcccttgtgc aaaaatttac cttcaggcct ccaaacaatg
     1441 agaagctgag tctgaacttc agaatgagtc tgaccatctc tccagtcagc caccgcctct
     1501 gtgccgttcc tcgggcatga agttgtcagg gagggagagg ggaaggaaag caggaagaat
     1561 ggccgtgtcc ccccaaggca ggagcgcctg ctcagcagtg agggaacagc atgcagtgcc
     1621 tctgaggaca ggtcatagga actggactca gaggaaacag gatccaaacc ccagctttgc
     1681 catctccagt ggagccttga gcaaatcaga gacactgaag tgtggcagac tgcccggatg
     1741 tttagtaagt cgg
//
LOCUS       XM_032653042            1729 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytochrome P450 2J2 (LOC116764420),
            transcript variant X3, mRNA.
ACCESSION   XM_032653042
VERSION     XM_032653042.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1729
                     /gene="LOC116764420"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764420"
     CDS             12..1364
                     /gene="LOC116764420"
                     /codon_start=1
                     /product="cytochrome P450 2J2 isoform X2"
                     /protein_id="XP_032508933.1"
                     /db_xref="GeneID:116764420"
                     /translation="MLAAVGSLAVAFWTVLRPRTVLLGAVAFLFFADFLKRRRPKNYP
                     PGPLRLPFVGNFFHLDFEKGHLSLQRFVKKYGNLFSLEFGDLPSVIITGLPLIKEVLV
                     HQEQKFLNRPITPIRERVFKKNGLIMSIGQVWKEQRRFALTTLKSFGLGRKSLEERIQ
                     EETHFLIQAMGEENGQPFDPHFKINNAVSNIICSITFGERFDYEDTQFQELLRLLDEV
                     TYLETSMWCQLYNVFPRIMNFLPGPHQMLFRNWEKLKMFVARVIENHKRGWNPAEARD
                     FIDAYLKEIEKHKGSATSSFHEENLIYSTLDLFFAGTETTSTTLRWGLLYMALYPEIQ
                     EKVQAEIDRVLGQSQQPSTAARESMPYTNAVIHEVQRMGNIIPMNVPREVTVDTTLGG
                     YHLPKGTMVLTNLTALHRDPAEWATPDVFNPEHFLENGQFKKREAFLPFSVGLQTMRS
                     "
     misc_feature    234..1343
                     /gene="LOC116764420"
                     /note="cytochrome P450 (CYP) superfamily; Region:
                     cytochrome_P450; cl41757"
                     /db_xref="CDD:477761"
     misc_feature    order(663..668,930..932,939..944,954..956,1143..1154)
                     /gene="LOC116764420"
                     /note="chemical substrate binding pocket [chemical
                     binding]; other site"
                     /db_xref="CDD:410651"
ORIGIN      
        1 aggtcgccgc catgctcgca gcggtgggct ccctggcggt tgccttctgg accgttctcc
       61 gtccccgcac tgtcctgttg ggggccgtcg cctttctctt ctttgctgat ttcctcaaaa
      121 ggcggcgccc gaagaactac ccgccgggac ccctccgcct gcccttcgta ggcaacttct
      181 tccatctgga ctttgagaag gggcacctgt cgcttcagag gtttgtgaag aaatatggga
      241 acctttttag cctggaattc ggtgacttgc cttcagttat tataactgga ttgcccttaa
      301 tcaaagaagt ccttgtccac caggagcaaa agtttttgaa ccgccctata acccctattc
      361 gagaacgtgt ttttaagaaa aatggcttga tcatgtccat aggccaggtg tggaaggaac
      421 aaagaaggtt tgccctgaca acactgaaga gctttggttt aggaaggaag agcttagagg
      481 agcgcattca ggaagagacc cacttcctca tccaggcaat gggagaggag aacggacagc
      541 ctttcgaccc tcacttcaaa atcaacaatg cagtttccaa tattatttgc tccatcacat
      601 ttggggagcg ctttgactac gaggacactc agttccagga gctgctgagg ctgctggatg
      661 aggtcacata tctcgagaca tcaatgtggt gccagctcta caacgtcttt ccaaggataa
      721 tgaatttcct tcctggaccc caccaaatgc tcttcaggaa ctgggagaag ctgaaaatgt
      781 ttgttgcccg tgtgatcgaa aaccacaaga gaggttggaa tcctgctgaa gcaagagact
      841 tcattgatgc ttacctcaag gaaatagaaa agcataaggg cagtgctact tcaagtttcc
      901 acgaagaaaa cctcatctac agcaccctgg acctcttctt tgctggaacg gagacaactt
      961 cgaccaccct gcgctggggt ctgctctaca tggccctcta ccccgaaatc caagaaaaag
     1021 tccaagctga gatcgacagg gtgcttggcc aatcacagca gccgagcacg gcagctcgag
     1081 agtccatgcc ctacaccaac gctgtcatcc acgaggtgca gagaatggga aacatcatcc
     1141 ccatgaatgt gcccagagag gtgacagtgg acaccaccct gggtggatac cacctgccca
     1201 aggggaccat ggtcctgacc aacctgactg cactgcacag ggaccccgca gagtgggcca
     1261 cccccgacgt tttcaatccg gagcattttc tggagaatgg acagtttaag aaaagggaag
     1321 cctttctgcc tttctcagta ggcctccaaa caatgagaag ctgagtctga acttcagaat
     1381 gagtctgacc atctctccag tcagccaccg cctctgtgcc gttcctcggg catgaagttg
     1441 tcagggaggg agaggggaag gaaagcagga agaatggccg tgtcccccca aggcaggagc
     1501 gcctgctcag cagtgaggga acagcatgca gtgcctctga ggacaggtca taggaactgg
     1561 actcagagga aacaggatcc aaaccccagc tttgccatct ccagtggagc cttgagcaaa
     1621 tcaggtatgt tgtgagtgat ttgcctctcc agccaggaaa tgaaaagaga atagtgattc
     1681 cttctctaaa ggaagaattg ctgtaaaaac cagagtgatt tggaaacca
//
LOCUS       XM_032653055             815 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 28S ribosomal protein S15,
            mitochondrial-like (LOC116764431), mRNA.
ACCESSION   XM_032653055
VERSION     XM_032653055.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..815
                     /gene="LOC116764431"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 Proteins, and 68%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764431"
     CDS             22..801
                     /gene="LOC116764431"
                     /codon_start=1
                     /product="28S ribosomal protein S15, mitochondrial-like"
                     /protein_id="XP_032508946.1"
                     /db_xref="GeneID:116764431"
                     /translation="MLRAAWRALSSIRTQAVTQAPVLGLPGGGCAMLLSIQRDLPSSP
                     GGLILRAARRYATQTPVQPSHEDDLSPSMLLKDYQDIPGIEKVDDVVKKLLSLEMANQ
                     KEKLKIKKEQLMNKVVEKPKDTSSLEARIVALTIKIRSCEEHMKKHRKDKSHKRYLMM
                     SIDQRKKMLKNLLKTNYTVFEKTCRELGIEYTFPPLYYRKTHLHWVTKKALCIRVFQE
                     AQKLEKQNRALKAVAAAVQKQVQKNPESPSKTGPEAIKENQ"
     misc_feature    349..588
                     /gene="LOC116764431"
                     /note="Ribosomal protein S15; Region: Ribosomal_S15;
                     pfam00312"
                     /db_xref="CDD:459756"
ORIGIN      
        1 cctcgggggt cagaagccac catgctgagg gcggcgtgga gggcgctgag ttcgattcgg
       61 acccaggcag tgactcaggc cccagtcctc gggctgccgg gtggagggtg cgccatgctt
      121 ctctccatcc agcgggacct tccctcaagt cctggaggtc tcatcctccg ggctgcccgc
      181 aggtatgcca cccagacacc agtccagccc agccatgaag atgacctgtc cccttctatg
      241 ctgctcaagg actaccagga catccctgga attgagaagg ttgatgatgt cgtgaaaaaa
      301 ctcttatctt tggaaatggc caaccagaaa gagaagctaa aaatcaagaa agagcagttg
      361 atgaacaagg tcgtggaaaa gcctaaggac accagctccc tggaggctcg aattgttgcg
      421 ttgactatca agatccgcag ttgtgaagaa cacatgaaga aacatcgaaa ggacaaatcc
      481 cacaagcgct atctgatgat gagcattgac cagaggaaaa agatgctcaa aaacctcctc
      541 aagaccaact atactgtctt tgagaagaca tgcagggagc tggggattga gtacaccttt
      601 ccccctctgt actaccgaaa aacccacctc cactgggtga ccaaaaaggc tctgtgcatt
      661 cgggttttcc aagaggctca aaagctggag aagcaaaaca gggccttaaa agctgtagct
      721 gcagcagtcc agaaacaagt ccagaagaac ccagagagcc cttccaaaac tggaccagag
      781 gcaatcaaag aaaaccaata aatgttaaaa ttaaa
//
LOCUS       XM_032653068            4227 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus formin binding protein 1 like (FNBP1L),
            transcript variant X1, mRNA.
ACCESSION   XM_032653068
VERSION     XM_032653068.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4227
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4227
                     /gene="FNBP1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 15
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116764436"
     CDS             158..1975
                     /gene="FNBP1L"
                     /codon_start=1
                     /product="formin-binding protein 1-like isoform X1"
                     /protein_id="XP_032508959.1"
                     /db_xref="GeneID:116764436"
                     /translation="MSWGTELWDQFDSLDKHTQWGIDFLERYAKFVKERIEIEQNYAK
                     QLRNLVKKYCPKRSTKDEEPRFTSCIAFFNILNELNDYAGQREVVAEEMAHRVYGELM
                     RYAHDLKTERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDND
                     TNATKADVEKAKQQLNLRTHMADENKNEYAAQLQNFNGEQHKHFYVVIPQIYKQLQEM
                     DERRTIKLSECYRGFADSERKVIPIISKCLEGMILAAKSVDERRDSQMVVDSFKSGFE
                     PPGDFPFEDYSQHIYRTISDGTISASKQESGKVDAKTTVGKAKGKLWLFGKKPKPQSP
                     PLTPTSLFTSSTPNGSQFLTFSIEPVHYCMNEIKTGKPRIPSFRSLKRGWSVKMGPAL
                     EDFSHLPPEQRRKKLQQRIDELNRELQKESDQKEALNKMKDVYEKNPQMGDPGSLQPK
                     LAETMNNIDRLRMEIHKNEAWLSEVEGKTGGRGDRRHSSDINHLVTQGRESPEGSYTD
                     DANQEVRGPPQQHGHHSEFDDEFEDDDPLPAIGHCKAIYPFDGHNEGTLAMKEGEVLY
                     IIEEDKGDGWTRARRQNGEEGYVPTSYIDVTLEKNSKGS"
     misc_feature    170..925
                     /gene="FNBP1L"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Formin Binding Protein
                     1-Like; Region: F-BAR_FNBP1L; cd07675"
                     /db_xref="CDD:153359"
     misc_feature    order(185..187,194..196,215..217,224..229,236..238,
                     245..250,257..262,269..271,281..283,290..292,302..304,
                     392..394,401..403,713..715,725..727,803..805,815..817,
                     824..826,833..838,845..847,857..859,866..868,878..880,
                     890..892,899..904,911..913)
                     /gene="FNBP1L"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153359"
     misc_feature    order(254..256,287..289,308..313,323..325,482..484,
                     491..496,548..550,569..571,581..583,590..592,602..604)
                     /gene="FNBP1L"
                     /note="putative membrane interaction site; other site"
                     /db_xref="CDD:153359"
     misc_feature    1352..1594
                     /gene="FNBP1L"
                     /note="Protein kinase C-related kinase homology region 1
                     (HR1) Rho-binding domain of vertebrate Cdc42-Interacting
                     Protein 4 and FormiN Binding Protein 1-Like; Region:
                     HR1_CIP4_FNBP1L; cd11628"
                     /db_xref="CDD:212018"
     misc_feature    order(1391..1393,1400..1402,1409..1414,1421..1426,
                     1430..1435,1442..1447,1451..1456,1508..1513,1520..1522,
                     1529..1534,1541..1543)
                     /gene="FNBP1L"
                     /note="putative Rho binding site 1 [polypeptide binding];
                     other site"
                     /db_xref="CDD:212018"
     misc_feature    order(1415..1420,1424..1429,1436..1441,1445..1450,
                     1457..1462,1493..1498,1502..1504)
                     /gene="FNBP1L"
                     /note="putative Rho binding site 2 [polypeptide binding];
                     other site"
                     /db_xref="CDD:212018"
     misc_feature    1778..1948
                     /gene="FNBP1L"
                     /note="Src Homology 3 domain of Formin Binding Protein
                     1-Like; Region: SH3_FNBP1L; cd12072"
                     /db_xref="CDD:213005"
     misc_feature    order(1796..1798,1802..1804,1811..1813,1823..1825,
                     1880..1885,1925..1927,1931..1936)
                     /gene="FNBP1L"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:213005"
ORIGIN      
        1 tctcccacac tggggaaacc ggcggtggcg gcaccttcag aggctgagca gctgagccgc
       61 gagcccgcca gtgggaggtc ggacagactg actgcagagc cgacagacgg acggacagcg
      121 gggcagccag acggctcgag tcgcctcgag ttccgccatg agctggggca cggagctttg
      181 ggatcagttc gacagcttag acaaacatac acaatgggga attgacttct tggaaagata
      241 cgccaaattt gttaaagaga ggatagaaat tgaacagaac tatgcaaaac aattgagaaa
      301 tctggttaag aagtactgtc ccaaacgttc caccaaagat gaagagccaa ggtttacttc
      361 gtgtatagcc ttttttaaca tccttaacga gttaaatgac tatgcaggac agcgagaagt
      421 agtagcagaa gaaatggcgc acagagttta tggtgaatta atgagatatg ctcatgatct
      481 gaaaactgaa agaaaaatgc atcttcaaga gggacgaaaa gctcagcaat accttgacat
      541 gtgctggaaa cagatggata atagtaaaaa gaaatttgaa agagaatgta gagaggcaga
      601 gaaggcacaa cagagttatg aaagattgga taatgatact aacgcaacca aggcagatgt
      661 tgaaaaggct aaacagcagt tgaatctacg tacacatatg gctgacgaaa ataagaatga
      721 atatgctgca caattacaaa acttcaatgg agaacagcac aaacatttct acgtagtgat
      781 tcctcagatt tacaagcaac tacaagaaat ggatgaaaga aggactatta aactcagtga
      841 gtgttacaga ggatttgcag actcagaacg caaagttatt cctatcattt caaagtgttt
      901 ggaaggaatg attcttgcag caaaatcagt tgacgaaaga agagactctc agatggtagt
      961 agactccttt aagtccggat ttgaacctcc aggagacttt ccatttgaag attacagtca
     1021 gcatatttat agaaccattt ctgatgggac tatcagtgca tccaaacagg aaagtgggaa
     1081 ggtggatgcc aaaaccacag taggaaaggc caagggcaag ttgtggctct ttggaaagaa
     1141 gccaaagcca cagtccccac ccttaacccc tactagttta ttcacatcca gtactcctaa
     1201 tgggtcccag tttctcacat tctccattga gcccgtgcat tattgtatga atgaaataaa
     1261 aacagggaag cccagaattc cttctttcag aagtctcaaa agagggtggt cggtgaagat
     1321 gggcccagca ctagaagatt tcagtcatct gccaccagaa cagagacgta aaaaactaca
     1381 gcagcgcatc gatgaactta acagagaact acaaaaagaa tcagaccaaa aagaagcact
     1441 caacaaaatg aaagatgtat atgagaaaaa tccacaaatg ggggacccag ggagtttgca
     1501 gcctaaatta gcagagacca tgaataacat tgaccgcctg cgaatggaaa tccacaagaa
     1561 tgaggcttgg ctgtctgaag ttgaaggcaa aacaggtgga agaggagaca gaagacatag
     1621 cagtgacata aatcaccttg taacacaggg acgagaaagc cctgagggaa gctatactga
     1681 tgatgcaaac caagaagtcc gtgggccacc ccaacagcat ggtcaccaca gtgagtttga
     1741 tgatgagttt gaagatgacg atcccttgcc tgctattgga cactgcaaag ctatctaccc
     1801 tttcgatgga cataatgaag gtactctggc aatgaaagaa ggtgaagttc tatacattat
     1861 tgaggaggac aagggtgacg gatggacaag agctcggaga cagaatggtg aagaaggcta
     1921 cgttcccaca tcatacatag atgtaactct agagaaaaac agtaaaggtt cctgaagagg
     1981 gtttctgagg aaatgggcaa gatgttgaag gaggttacat gcagctgctt ttggggggag
     2041 ggtattagag ttgtcaggcc cagagagagt gagagaagca agttgcatga gtgcatgcag
     2101 acatgattat ttttttacta acttcattag catttccgta cattgtttaa aaaaatcatt
     2161 gtaataccaa cccttaaact tgtcaattac agttattcac ataaaggaaa aaagccaaca
     2221 atggctaacc tttttttttt ttttccattt attttactga tatccaaatc ggaaagaatg
     2281 cagagctgtc cttaagtttg tcatatctga ctgtcccaac aggactgtcc attgcagctc
     2341 ttttaattgg cttttagacc cattgtctgt tagaatcctt gccatttgtc agtgtctgcc
     2401 tgcgtcacct ctgtgcttgc ttaacatcct gttgcatgtc tagagtgatc gggtttagag
     2461 ttttcaggca tgtctttata atcccttgtt cttgtcaaag cctttgtttt gttttacatt
     2521 tgtagtgcaa atcactttgt cagacatctc tagcactaat gtttccatcc tagtatttgt
     2581 gtacgctgct ataacttccc cactgcaaaa cattccagtt ttggcattat gaagaagcag
     2641 tttgtgaacc tgaagtattt atgatcagaa gaaaaaacat ctctgctcta gcctacagcc
     2701 cagttgaaag aactctttga aacatgatac atcttcagca cctcagtctg ggaagaatct
     2761 atagtcagca ctgaaatcct ggcataataa acacagaaga tactcaccgc ctcaagacaa
     2821 aggactgttg tcagaagtca gctgcttcca ttcaaacgct gccttaaact agagtgccta
     2881 aatctgctga ttgccaacac taccactaca gtatcccaca aagggcttta tgtgtcagct
     2941 cagtgcgacc tccattaact cggcagtgct gctatagctg ccgctacaac ctcggtaggt
     3001 ggcttttaga gctctaccat gtttgttggt gcatcttcaa atttacgcat caaactaaag
     3061 acatgtctga gtccatttta cttagtgttt ttatgagaag ttttatggac ctccctccca
     3121 ttgtctttta atttggggtt actgttttct caattattac aatgatagtc tgtttccaag
     3181 tgatgatttt atttgaacca catacaattt agtgaaactt tgtaatgatc tatgtgcact
     3241 tttccttgta aaaatgggag tttctgtatg tttatacttg taaatataat tgtcatcagt
     3301 gcccctatgc tcatgttgct catgttgtcc tccctcgcat ttgtgattct gttaatgact
     3361 tgtatcttaa ctaatttctt agtggcattt aatggggagg tgggtgggag tggggggata
     3421 tttgtaacat ggaagcttca ttaatttggt tctttactgt tttgaaggaa gaaagaacgt
     3481 gaaatggtct gtgtattgtt ggatttcaag cgatatttta gaaactgtgt gactgcttta
     3541 ataatttttc ccagtgttat ttgaatcgta ctaccagtta tactaaagct gaatgacaat
     3601 tgtgtgaaag tcgatgcctt cgtaagatca agtactccca ttacacagct gacatgatag
     3661 tgtattacct ttaaggctag taaactatga agttttagat tttaaatctc gttacagggt
     3721 tatttatata aagtgacatt attcagtact gacagactac ataaagtagt tttcagatcc
     3781 agtgctattt ttattttaaa ggttagcaat gaagaggaaa cctgagctgg ctgtgtttgt
     3841 cttctgtaca aagcctgagg tgcttgtgct ttttggcaac agccacagag ggcaaagttt
     3901 aaggctttct tgtgaggact aactgttctt ttcaagctac tgtttgtttt tcttaaagca
     3961 ggatttgctt ccgtaggagg caagttccct cacgtggaat agtgcaacct gtgtatgggt
     4021 tattacgata ggaaagacat ttgtacttgc acagtttaaa tcattcttaa atttgaatat
     4081 gtgaattgtc caaaagaagt ctttaatttt ttcagtaatt tttactcttt ttgtgcacat
     4141 gttgatttat taatgtaaat gctttgttta agatagtgtt ctctgttgag aatattttca
     4201 tggaataaaa taatcttttc atggtca
//
LOCUS       XM_032653078            5399 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus formin binding protein 1 like (FNBP1L),
            transcript variant X2, mRNA.
ACCESSION   XM_032653078
VERSION     XM_032653078.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5399
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5399
                     /gene="FNBP1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 15 long SRA reads, 22
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764436"
     CDS             209..1864
                     /gene="FNBP1L"
                     /codon_start=1
                     /product="formin-binding protein 1-like isoform X2"
                     /protein_id="XP_032508969.1"
                     /db_xref="GeneID:116764436"
                     /translation="MSWGTELWDQFDSLDKHTQWGIDFLERYAKFVKERIEIEQNYAK
                     QLRNLVKKYCPKRSTKDEEPRFTSCIAFFNILNELNDYAGQREVVAEEMAHRVYGELM
                     RYAHDLKTERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDND
                     TNATKADVEKAKQQLNLRTHMADENKNEYAAQLQNFNGEQHKHFYVVIPQIYKQLQEM
                     DERRTIKLSECYRGFADSERKVIPIISKCLEGMILAAKSVDERRDSQMVVDSFKSGFE
                     PPGDFPFEDYSQHIYRTISDGTISASKQESGKVDAKTTVGKAKGKLWLFGKKPKGPAL
                     EDFSHLPPEQRRKKLQQRIDELNRELQKESDQKEALNKMKDVYEKNPQMGDPGSLQPK
                     LAETMNNIDRLRMEIHKNEAWLSEVEGKTGGRGDRRHSSDINHLVTQGRESPEGSYTD
                     DANQEVRGPPQQHGHHSEFDDEFEDDDPLPAIGHCKAIYPFDGHNEGTLAMKEGEVLY
                     IIEEDKGDGWTRARRQNGEEGYVPTSYIDVTLEKNSKGAVTYI"
     misc_feature    221..976
                     /gene="FNBP1L"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Formin Binding Protein
                     1-Like; Region: F-BAR_FNBP1L; cd07675"
                     /db_xref="CDD:153359"
     misc_feature    order(236..238,245..247,266..268,275..280,287..289,
                     296..301,308..313,320..322,332..334,341..343,353..355,
                     443..445,452..454,764..766,776..778,854..856,866..868,
                     875..877,884..889,896..898,908..910,917..919,929..931,
                     941..943,950..955,962..964)
                     /gene="FNBP1L"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153359"
     misc_feature    order(305..307,338..340,359..364,374..376,533..535,
                     542..547,599..601,620..622,632..634,641..643,653..655)
                     /gene="FNBP1L"
                     /note="putative membrane interaction site; other site"
                     /db_xref="CDD:153359"
     misc_feature    1229..1471
                     /gene="FNBP1L"
                     /note="Protein kinase C-related kinase homology region 1
                     (HR1) Rho-binding domain of vertebrate Cdc42-Interacting
                     Protein 4 and FormiN Binding Protein 1-Like; Region:
                     HR1_CIP4_FNBP1L; cd11628"
                     /db_xref="CDD:212018"
     misc_feature    order(1268..1270,1277..1279,1286..1291,1298..1303,
                     1307..1312,1319..1324,1328..1333,1385..1390,1397..1399,
                     1406..1411,1418..1420)
                     /gene="FNBP1L"
                     /note="putative Rho binding site 1 [polypeptide binding];
                     other site"
                     /db_xref="CDD:212018"
     misc_feature    order(1292..1297,1301..1306,1313..1318,1322..1327,
                     1334..1339,1370..1375,1379..1381)
                     /gene="FNBP1L"
                     /note="putative Rho binding site 2 [polypeptide binding];
                     other site"
                     /db_xref="CDD:212018"
     misc_feature    1655..1825
                     /gene="FNBP1L"
                     /note="Src Homology 3 domain of Formin Binding Protein
                     1-Like; Region: SH3_FNBP1L; cd12072"
                     /db_xref="CDD:213005"
     misc_feature    order(1673..1675,1679..1681,1688..1690,1700..1702,
                     1757..1762,1802..1804,1808..1813)
                     /gene="FNBP1L"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:213005"
ORIGIN      
        1 aggctttggg aggcggggac gcggcgtcgg cggcttctct agtcgcgtct ttctcccaca
       61 ctggggaaac cggcggtggc ggcaccttca gaggctgagc agctgagccg cgagcccgcc
      121 agtgggaggt cggacagact gactgcagag ccgacagacg gacggacagc ggggcagcca
      181 gacggctcga gtcgcctcga gttccgccat gagctggggc acggagcttt gggatcagtt
      241 cgacagctta gacaaacata cacaatgggg aattgacttc ttggaaagat acgccaaatt
      301 tgttaaagag aggatagaaa ttgaacagaa ctatgcaaaa caattgagaa atctggttaa
      361 gaagtactgt cccaaacgtt ccaccaaaga tgaagagcca aggtttactt cgtgtatagc
      421 cttttttaac atccttaacg agttaaatga ctatgcagga cagcgagaag tagtagcaga
      481 agaaatggcg cacagagttt atggtgaatt aatgagatat gctcatgatc tgaaaactga
      541 aagaaaaatg catcttcaag agggacgaaa agctcagcaa taccttgaca tgtgctggaa
      601 acagatggat aatagtaaaa agaaatttga aagagaatgt agagaggcag agaaggcaca
      661 acagagttat gaaagattgg ataatgatac taacgcaacc aaggcagatg ttgaaaaggc
      721 taaacagcag ttgaatctac gtacacatat ggctgacgaa aataagaatg aatatgctgc
      781 acaattacaa aacttcaatg gagaacagca caaacatttc tacgtagtga ttcctcagat
      841 ttacaagcaa ctacaagaaa tggatgaaag aaggactatt aaactcagtg agtgttacag
      901 aggatttgca gactcagaac gcaaagttat tcctatcatt tcaaagtgtt tggaaggaat
      961 gattcttgca gcaaaatcag ttgacgaaag aagagactct cagatggtag tagactcctt
     1021 taagtccgga tttgaacctc caggagactt tccatttgaa gattacagtc agcatattta
     1081 tagaaccatt tctgatggga ctatcagtgc atccaaacag gaaagtggga aggtggatgc
     1141 caaaaccaca gtaggaaagg ccaagggcaa gttgtggctc tttggaaaga agccaaaggg
     1201 cccagcacta gaagatttca gtcatctgcc accagaacag agacgtaaaa aactacagca
     1261 gcgcatcgat gaacttaaca gagaactaca aaaagaatca gaccaaaaag aagcactcaa
     1321 caaaatgaaa gatgtatatg agaaaaatcc acaaatgggg gacccaggga gtttgcagcc
     1381 taaattagca gagaccatga ataacattga ccgcctgcga atggaaatcc acaagaatga
     1441 ggcttggctg tctgaagttg aaggcaaaac aggtggaaga ggagacagaa gacatagcag
     1501 tgacataaat caccttgtaa cacagggacg agaaagccct gagggaagct atactgatga
     1561 tgcaaaccaa gaagtccgtg ggccacccca acagcatggt caccacagtg agtttgatga
     1621 tgagtttgaa gatgacgatc ccttgcctgc tattggacac tgcaaagcta tctacccttt
     1681 cgatggacat aatgaaggta ctctggcaat gaaagaaggt gaagttctat acattattga
     1741 ggaggacaag ggtgacggat ggacaagagc tcggagacag aatggtgaag aaggctacgt
     1801 tcccacatca tacatagatg taactctaga gaaaaacagt aaaggtgcag taacttacat
     1861 ctaaactaac ccggcagctt tgtaacatgt atgacatagg aatgataaca aaatgaaaac
     1921 acagtcaatg ggtgggaaaa cataagaaag ctgaaagggc atccaagatt tattgttcac
     1981 tgtgtgagct gagtgtaggc tcgatcttag agatgtgact attacaagaa actgttctcg
     2041 tgacgcttta ccatttgagt gatgttggtg tgaagcttaa ttgatgcctt ttgctttatg
     2101 tcctgcttaa gtctgtgtga aggatttgtg tttttctgcc ttataaatca taaaatttaa
     2161 tctactgggc aggaatccat cctgtagagg ggtagggata gaaagctccc tacccctcta
     2221 cactttgctt caggaaacac agtgattgta gtgaactcaa gtaaaactgc tctgaaatgc
     2281 ttgctataaa aagctgatgc ccaaaagagt ggtttggtct aggggtttga aattgtagct
     2341 acagtttcta ggaaaaatgt aataatagtt ggctaattgg ataaaatacg aatgtaatca
     2401 ttttcatttt tgtccttatt ctcaacttca gtttcctaaa ggaagaaaac aggcacctaa
     2461 cacataatct gttttagtag taggctaatc aagagacgtg caaaataaac aggcctggtc
     2521 ttgctcttta agtgaataaa atggctttct tttgagaccc aaggatattt tcaggttttc
     2581 tagtaatttt caataatgta caagctttct tctaaattaa tgctggtatt ttttatcttt
     2641 aaatgtcttt tgagaaatac cactttagtg atactagcat ttagcaatta tacataggaa
     2701 agtggattct aaataaacta agaggaaatc ttgcatggag gagaagtact ggcaaatttt
     2761 gcttgaaagc aaaaatgact tttttcacta actgggttgg aggaatatat ctctgccatc
     2821 actgagggca tttcctcatt ttagctgaat cgtcaattat taggagtttt tttttccaat
     2881 tttaataagc atttgttgga aacactgtat aatcaagaca ttgatagcag tgctagttgt
     2941 gtaggggagt aaagtgagga agcaattaag agactggtcc ttaattttgc tcatgttcca
     3001 acatgttttg gtgtttttaa tagctgacta taaaatgatt ttagagacat ttgggatgga
     3061 cactttgaac actccttttg gtcttaccaa aggtcttcag taattgttct tttctttttc
     3121 ctcctggact gcaggttcct gaagagggtt tctgaggaaa tgggcaagat gttgaaggag
     3181 gttacatgca gctgcttttg gggggagggt attagagttg tcaggcccag agagagtgag
     3241 agaagcaagt tgcatgagtg catgcagaca tgattatttt tttactaact tcattagcat
     3301 ttccgtacat tgtttaaaaa aatcattgta ataccaaccc ttaaacttgt caattacagt
     3361 tattcacata aaggaaaaaa gccaacaatg gctaaccttt tttttttttt tccatttatt
     3421 ttactgatat ccaaatcgga aagaatgcag agctgtcctt aagtttgtca tatctgactg
     3481 tcccaacagg actgtccatt gcagctcttt taattggctt ttagacccat tgtctgttag
     3541 aatccttgcc atttgtcagt gtctgcctgc gtcacctctg tgcttgctta acatcctgtt
     3601 gcatgtctag agtgatcggg tttagagttt tcaggcatgt ctttataatc ccttgttctt
     3661 gtcaaagcct ttgttttgtt ttacatttgt agtgcaaatc actttgtcag acatctctag
     3721 cactaatgtt tccatcctag tatttgtgta cgctgctata acttccccac tgcaaaacat
     3781 tccagttttg gcattatgaa gaagcagttt gtgaacctga agtatttatg atcagaagaa
     3841 aaaacatctc tgctctagcc tacagcccag ttgaaagaac tctttgaaac atgatacatc
     3901 ttcagcacct cagtctggga agaatctata gtcagcactg aaatcctggc ataataaaca
     3961 cagaagatac tcaccgcctc aagacaaagg actgttgtca gaagtcagct gcttccattc
     4021 aaacgctgcc ttaaactaga gtgcctaaat ctgctgattg ccaacactac cactacagta
     4081 tcccacaaag ggctttatgt gtcagctcag tgcgacctcc attaactcgg cagtgctgct
     4141 atagctgccg ctacaacctc ggtaggtggc ttttagagct ctaccatgtt tgttggtgca
     4201 tcttcaaatt tacgcatcaa actaaagaca tgtctgagtc cattttactt agtgttttta
     4261 tgagaagttt tatggacctc cctcccattg tcttttaatt tggggttact gttttctcaa
     4321 ttattacaat gatagtctgt ttccaagtga tgattttatt tgaaccacat acaatttagt
     4381 gaaactttgt aatgatctat gtgcactttt ccttgtaaaa atgggagttt ctgtatgttt
     4441 atacttgtaa atataattgt catcagtgcc cctatgctca tgttgctcat gttgtcctcc
     4501 ctcgcatttg tgattctgtt aatgacttgt atcttaacta atttcttagt ggcatttaat
     4561 ggggaggtgg gtgggagtgg ggggatattt gtaacatgga agcttcatta atttggttct
     4621 ttactgtttt gaaggaagaa agaacgtgaa atggtctgtg tattgttgga tttcaagcga
     4681 tattttagaa actgtgtgac tgctttaata atttttccca gtgttatttg aatcgtacta
     4741 ccagttatac taaagctgaa tgacaattgt gtgaaagtcg atgccttcgt aagatcaagt
     4801 actcccatta cacagctgac atgatagtgt attaccttta aggctagtaa actatgaagt
     4861 tttagatttt aaatctcgtt acagggttat ttatataaag tgacattatt cagtactgac
     4921 agactacata aagtagtttt cagatccagt gctattttta ttttaaaggt tagcaatgaa
     4981 gaggaaacct gagctggctg tgtttgtctt ctgtacaaag cctgaggtgc ttgtgctttt
     5041 tggcaacagc cacagagggc aaagtttaag gctttcttgt gaggactaac tgttcttttc
     5101 aagctactgt ttgtttttct taaagcagga tttgcttccg taggaggcaa gttccctcac
     5161 gtggaatagt gcaacctgtg tatgggttat tacgatagga aagacatttg tacttgcaca
     5221 gtttaaatca ttcttaaatt tgaatatgtg aattgtccaa aagaagtctt taattttttc
     5281 agtaattttt actctttttg tgcacatgtt gatttattaa tgtaaatgct ttgtttaaga
     5341 tagtgttctc tgttgagaat attttcatgg aataaaataa tcttttcatg gtcagttaa
//
LOCUS       XM_032653085            4104 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus formin binding protein 1 like (FNBP1L),
            transcript variant X3, mRNA.
ACCESSION   XM_032653085
VERSION     XM_032653085.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4104
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4104
                     /gene="FNBP1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 13 long SRA reads, 18
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764436"
     CDS             209..1852
                     /gene="FNBP1L"
                     /codon_start=1
                     /product="formin-binding protein 1-like isoform X3"
                     /protein_id="XP_032508976.1"
                     /db_xref="GeneID:116764436"
                     /translation="MSWGTELWDQFDSLDKHTQWGIDFLERYAKFVKERIEIEQNYAK
                     QLRNLVKKYCPKRSTKDEEPRFTSCIAFFNILNELNDYAGQREVVAEEMAHRVYGELM
                     RYAHDLKTERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDND
                     TNATKADVEKAKQQLNLRTHMADENKNEYAAQLQNFNGEQHKHFYVVIPQIYKQLQEM
                     DERRTIKLSECYRGFADSERKVIPIISKCLEGMILAAKSVDERRDSQMVVDSFKSGFE
                     PPGDFPFEDYSQHIYRTISDGTISASKQESGKVDAKTTVGKAKGKLWLFGKKPKGPAL
                     EDFSHLPPEQRRKKLQQRIDELNRELQKESDQKEALNKMKDVYEKNPQMGDPGSLQPK
                     LAETMNNIDRLRMEIHKNEAWLSEVEGKTGGRGDRRHSSDINHLVTQGRESPEGSYTD
                     DANQEVRGPPQQHGHHSEFDDEFEDDDPLPAIGHCKAIYPFDGHNEGTLAMKEGEVLY
                     IIEEDKGDGWTRARRQNGEEGYVPTSYIDVTLEKNSKGS"
     misc_feature    221..976
                     /gene="FNBP1L"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Formin Binding Protein
                     1-Like; Region: F-BAR_FNBP1L; cd07675"
                     /db_xref="CDD:153359"
     misc_feature    order(236..238,245..247,266..268,275..280,287..289,
                     296..301,308..313,320..322,332..334,341..343,353..355,
                     443..445,452..454,764..766,776..778,854..856,866..868,
                     875..877,884..889,896..898,908..910,917..919,929..931,
                     941..943,950..955,962..964)
                     /gene="FNBP1L"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153359"
     misc_feature    order(305..307,338..340,359..364,374..376,533..535,
                     542..547,599..601,620..622,632..634,641..643,653..655)
                     /gene="FNBP1L"
                     /note="putative membrane interaction site; other site"
                     /db_xref="CDD:153359"
     misc_feature    1229..1471
                     /gene="FNBP1L"
                     /note="Protein kinase C-related kinase homology region 1
                     (HR1) Rho-binding domain of vertebrate Cdc42-Interacting
                     Protein 4 and FormiN Binding Protein 1-Like; Region:
                     HR1_CIP4_FNBP1L; cd11628"
                     /db_xref="CDD:212018"
     misc_feature    order(1268..1270,1277..1279,1286..1291,1298..1303,
                     1307..1312,1319..1324,1328..1333,1385..1390,1397..1399,
                     1406..1411,1418..1420)
                     /gene="FNBP1L"
                     /note="putative Rho binding site 1 [polypeptide binding];
                     other site"
                     /db_xref="CDD:212018"
     misc_feature    order(1292..1297,1301..1306,1313..1318,1322..1327,
                     1334..1339,1370..1375,1379..1381)
                     /gene="FNBP1L"
                     /note="putative Rho binding site 2 [polypeptide binding];
                     other site"
                     /db_xref="CDD:212018"
     misc_feature    1655..1825
                     /gene="FNBP1L"
                     /note="Src Homology 3 domain of Formin Binding Protein
                     1-Like; Region: SH3_FNBP1L; cd12072"
                     /db_xref="CDD:213005"
     misc_feature    order(1673..1675,1679..1681,1688..1690,1700..1702,
                     1757..1762,1802..1804,1808..1813)
                     /gene="FNBP1L"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:213005"
ORIGIN      
        1 aggctttggg aggcggggac gcggcgtcgg cggcttctct agtcgcgtct ttctcccaca
       61 ctggggaaac cggcggtggc ggcaccttca gaggctgagc agctgagccg cgagcccgcc
      121 agtgggaggt cggacagact gactgcagag ccgacagacg gacggacagc ggggcagcca
      181 gacggctcga gtcgcctcga gttccgccat gagctggggc acggagcttt gggatcagtt
      241 cgacagctta gacaaacata cacaatgggg aattgacttc ttggaaagat acgccaaatt
      301 tgttaaagag aggatagaaa ttgaacagaa ctatgcaaaa caattgagaa atctggttaa
      361 gaagtactgt cccaaacgtt ccaccaaaga tgaagagcca aggtttactt cgtgtatagc
      421 cttttttaac atccttaacg agttaaatga ctatgcagga cagcgagaag tagtagcaga
      481 agaaatggcg cacagagttt atggtgaatt aatgagatat gctcatgatc tgaaaactga
      541 aagaaaaatg catcttcaag agggacgaaa agctcagcaa taccttgaca tgtgctggaa
      601 acagatggat aatagtaaaa agaaatttga aagagaatgt agagaggcag agaaggcaca
      661 acagagttat gaaagattgg ataatgatac taacgcaacc aaggcagatg ttgaaaaggc
      721 taaacagcag ttgaatctac gtacacatat ggctgacgaa aataagaatg aatatgctgc
      781 acaattacaa aacttcaatg gagaacagca caaacatttc tacgtagtga ttcctcagat
      841 ttacaagcaa ctacaagaaa tggatgaaag aaggactatt aaactcagtg agtgttacag
      901 aggatttgca gactcagaac gcaaagttat tcctatcatt tcaaagtgtt tggaaggaat
      961 gattcttgca gcaaaatcag ttgacgaaag aagagactct cagatggtag tagactcctt
     1021 taagtccgga tttgaacctc caggagactt tccatttgaa gattacagtc agcatattta
     1081 tagaaccatt tctgatggga ctatcagtgc atccaaacag gaaagtggga aggtggatgc
     1141 caaaaccaca gtaggaaagg ccaagggcaa gttgtggctc tttggaaaga agccaaaggg
     1201 cccagcacta gaagatttca gtcatctgcc accagaacag agacgtaaaa aactacagca
     1261 gcgcatcgat gaacttaaca gagaactaca aaaagaatca gaccaaaaag aagcactcaa
     1321 caaaatgaaa gatgtatatg agaaaaatcc acaaatgggg gacccaggga gtttgcagcc
     1381 taaattagca gagaccatga ataacattga ccgcctgcga atggaaatcc acaagaatga
     1441 ggcttggctg tctgaagttg aaggcaaaac aggtggaaga ggagacagaa gacatagcag
     1501 tgacataaat caccttgtaa cacagggacg agaaagccct gagggaagct atactgatga
     1561 tgcaaaccaa gaagtccgtg ggccacccca acagcatggt caccacagtg agtttgatga
     1621 tgagtttgaa gatgacgatc ccttgcctgc tattggacac tgcaaagcta tctacccttt
     1681 cgatggacat aatgaaggta ctctggcaat gaaagaaggt gaagttctat acattattga
     1741 ggaggacaag ggtgacggat ggacaagagc tcggagacag aatggtgaag aaggctacgt
     1801 tcccacatca tacatagatg taactctaga gaaaaacagt aaaggttcct gaagagggtt
     1861 tctgaggaaa tgggcaagat gttgaaggag gttacatgca gctgcttttg gggggagggt
     1921 attagagttg tcaggcccag agagagtgag agaagcaagt tgcatgagtg catgcagaca
     1981 tgattatttt tttactaact tcattagcat ttccgtacat tgtttaaaaa aatcattgta
     2041 ataccaaccc ttaaacttgt caattacagt tattcacata aaggaaaaaa gccaacaatg
     2101 gctaaccttt tttttttttt tccatttatt ttactgatat ccaaatcgga aagaatgcag
     2161 agctgtcctt aagtttgtca tatctgactg tcccaacagg actgtccatt gcagctcttt
     2221 taattggctt ttagacccat tgtctgttag aatccttgcc atttgtcagt gtctgcctgc
     2281 gtcacctctg tgcttgctta acatcctgtt gcatgtctag agtgatcggg tttagagttt
     2341 tcaggcatgt ctttataatc ccttgttctt gtcaaagcct ttgttttgtt ttacatttgt
     2401 agtgcaaatc actttgtcag acatctctag cactaatgtt tccatcctag tatttgtgta
     2461 cgctgctata acttccccac tgcaaaacat tccagttttg gcattatgaa gaagcagttt
     2521 gtgaacctga agtatttatg atcagaagaa aaaacatctc tgctctagcc tacagcccag
     2581 ttgaaagaac tctttgaaac atgatacatc ttcagcacct cagtctggga agaatctata
     2641 gtcagcactg aaatcctggc ataataaaca cagaagatac tcaccgcctc aagacaaagg
     2701 actgttgtca gaagtcagct gcttccattc aaacgctgcc ttaaactaga gtgcctaaat
     2761 ctgctgattg ccaacactac cactacagta tcccacaaag ggctttatgt gtcagctcag
     2821 tgcgacctcc attaactcgg cagtgctgct atagctgccg ctacaacctc ggtaggtggc
     2881 ttttagagct ctaccatgtt tgttggtgca tcttcaaatt tacgcatcaa actaaagaca
     2941 tgtctgagtc cattttactt agtgttttta tgagaagttt tatggacctc cctcccattg
     3001 tcttttaatt tggggttact gttttctcaa ttattacaat gatagtctgt ttccaagtga
     3061 tgattttatt tgaaccacat acaatttagt gaaactttgt aatgatctat gtgcactttt
     3121 ccttgtaaaa atgggagttt ctgtatgttt atacttgtaa atataattgt catcagtgcc
     3181 cctatgctca tgttgctcat gttgtcctcc ctcgcatttg tgattctgtt aatgacttgt
     3241 atcttaacta atttcttagt ggcatttaat ggggaggtgg gtgggagtgg ggggatattt
     3301 gtaacatgga agcttcatta atttggttct ttactgtttt gaaggaagaa agaacgtgaa
     3361 atggtctgtg tattgttgga tttcaagcga tattttagaa actgtgtgac tgctttaata
     3421 atttttccca gtgttatttg aatcgtacta ccagttatac taaagctgaa tgacaattgt
     3481 gtgaaagtcg atgccttcgt aagatcaagt actcccatta cacagctgac atgatagtgt
     3541 attaccttta aggctagtaa actatgaagt tttagatttt aaatctcgtt acagggttat
     3601 ttatataaag tgacattatt cagtactgac agactacata aagtagtttt cagatccagt
     3661 gctattttta ttttaaaggt tagcaatgaa gaggaaacct gagctggctg tgtttgtctt
     3721 ctgtacaaag cctgaggtgc ttgtgctttt tggcaacagc cacagagggc aaagtttaag
     3781 gctttcttgt gaggactaac tgttcttttc aagctactgt ttgtttttct taaagcagga
     3841 tttgcttccg taggaggcaa gttccctcac gtggaatagt gcaacctgtg tatgggttat
     3901 tacgatagga aagacatttg tacttgcaca gtttaaatca ttcttaaatt tgaatatgtg
     3961 aattgtccaa aagaagtctt taattttttc agtaattttt actctttttg tgcacatgtt
     4021 gatttattaa tgtaaatgct ttgtttaaga tagtgttctc tgttgagaat attttcatgg
     4081 aataaaataa tcttttcatg gtca
//
LOCUS       XM_032653108            2187 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus suppressor of IKBKE 1 (SIKE1), transcript
            variant X1, mRNA.
ACCESSION   XM_032653108
VERSION     XM_032653108.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2187
                     /gene="SIKE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 6 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764457"
     CDS             93..716
                     /gene="SIKE1"
                     /codon_start=1
                     /product="suppressor of IKBKE 1 isoform X1"
                     /protein_id="XP_032508999.1"
                     /db_xref="GeneID:116764457"
                     /translation="MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMR
                     EAGTALPDQYQEDASDIKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALE
                     LIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDD
                     DQFCKIQEKLAQLELENKELRELLSISSESLRVRKENSMNTASQAIK"
     misc_feature    96..653
                     /gene="SIKE1"
                     /note="SIKE family; Region: SIKE; pfam05769"
                     /db_xref="CDD:461735"
ORIGIN      
        1 ggaagtgacg tctgtaaagc tgagaccggc tcagggagat ctgaactctt cgcgcaggtg
       61 agcggttctg cgactgtcgt cctggggccg ctatgagctg caccatcgag aagattctga
      121 cagacgctaa gactctactg gagaggctgc gggagcacga tgcagccgcc gagtcgctag
      181 tggatcaatc agcggcgctg caccggcggg tggccgctat gcgggaggcg gggacagcgc
      241 ttccggacca gtatcaagag gatgcatccg atataaagga catgtccaaa tacaaacctc
      301 acattctgct gtcccaagag aatacacaga ttagagactt gcagcaggaa aacagagagc
      361 tatgggtttc cttggaggaa caccaggatg ctttggaact catcatgagc aaataccgga
      421 aacagatgtt acaattaatg gttgctaaaa aagcagtgga tgctgaacca gtcctgaaag
      481 ctcaccagtc tcactctgca gaaattgaga gtcagatcga cagaatctgt gaaatgggag
      541 aagtgatgag gaaagcagtt caaatggatg atgatcaatt ttgtaagatt caggaaaaac
      601 tagcacaatt agagcttgaa aataaggaac ttcgagaatt attgtccatc agtagtgagt
      661 ctcttcgggt caggaaggaa aactcaatga acactgcttc ccaagctatc aaataattca
      721 acttctgaat gacggctaga gattgtttat cgaggaagga agttattatc tctctattcg
      781 agtattgtcc attcagtgtc ttgcctcaga cttgatttaa cgttgattaa atgtatcaag
      841 tggcagttta gaattctcag tcaaaagtgg ctgtccacga aacagttttg gggtatgtta
      901 gtgaaaatac tcactaaaat acactgagtt tcaccattcc tttctctaag agactacttt
      961 taattttcat ttctgggacc tcaatttata tgaactgttt tcagttcatt tttgttcttt
     1021 catatctctg aaacttagag cattttatta taaaccagca attttatttt atataggatt
     1081 gtaaattgca attcttaaaa aatttaaaaa gagattagct ttttcaatat atttggcata
     1141 aacctggatt tgtttccatt tgagaaaaat aatacaattc cacagaagta gattggcaga
     1201 ttctctaatt tgtaatgtca ttcacctttt ttgatgtttt aagtctctct ggtgctaaga
     1261 gttgacactt tatggcctgg tgtctttact cttaatttga gagaacctat tgctagtccc
     1321 tgggaaacat acttgaaaat aagtcaactg tttttttact agtgggagga taatcatcgt
     1381 attgttcaaa gaatgctgaa aaatttgtcc tgtgtgtgtt tacacacaca tgtgctctta
     1441 gttcagatgc taaaagtaac ttttatttat tctattagat gttagtagtc aatttttcaa
     1501 ttttgtccta ctaggaaatc ttcagcttgg gtagtttacc cagtgtgaag aagatataat
     1561 tggtttattc acatcatagt tcttaggtac tacattctac agtttatata taactttcat
     1621 ttataattaa gaaccatcac ttacttggat gtctttcatt actagtacta gtagttggct
     1681 tttttttaga tccatttttc acaggaagca aagttttatc acttaatgag agtttattac
     1741 attcatagaa gctgtgttga gattcaaatg ctaagtggtc agctaggccc actcatcatt
     1801 tcattccccc atctcagttt actcacattt caaagttata aattacttcg tgtaatacta
     1861 tcaatttagg tttgcccaaa aataattgaa ataatgaatg ctaaacctgt caatatttcc
     1921 cagtaaccgt aagcactata ctgcatggga gagacacatc attagaaaga gctttttgtt
     1981 agtgctttgt gtggcgtaac cttttttttg tacagccata aagaattaac tccaaataaa
     2041 acaacagaat ttctccatga tatcctaaga gcatctgatc ccagtaatac caaaggactt
     2101 tgcctaaaat ggtaggctgt aatgaatcgg tatatgtcat ttttgaattt gtcaaatttc
     2161 tattcagaat cctgcgaaca atttcca
//
LOCUS       XM_032653114             917 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus suppressor of IKBKE 1 (SIKE1), transcript
            variant X2, mRNA.
ACCESSION   XM_032653114
VERSION     XM_032653114.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..917
                     /gene="SIKE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764457"
     CDS             68..598
                     /gene="SIKE1"
                     /codon_start=1
                     /product="suppressor of IKBKE 1 isoform X2"
                     /protein_id="XP_032509005.1"
                     /db_xref="GeneID:116764457"
                     /translation="MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMR
                     EAGTALPDQYQEDASDIKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALE
                     LIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDD
                     DQFCKIQEKLAQLEDV"
     misc_feature    71..589
                     /gene="SIKE1"
                     /note="SIKE family; Region: SIKE; pfam05769"
                     /db_xref="CDD:461735"
ORIGIN      
        1 ccggctcagg gagatctgaa ctcttcgcgc aggtgagcgg ttctgcgact gtcgtcctgg
       61 ggccgctatg agctgcacca tcgagaagat tctgacagac gctaagactc tactggagag
      121 gctgcgggag cacgatgcag ccgccgagtc gctagtggat caatcagcgg cgctgcaccg
      181 gcgggtggcc gctatgcggg aggcggggac agcgcttccg gaccagtatc aagaggatgc
      241 atccgatata aaggacatgt ccaaatacaa acctcacatt ctgctgtccc aagagaatac
      301 acagattaga gacttgcagc aggaaaacag agagctatgg gtttccttgg aggaacacca
      361 ggatgctttg gaactcatca tgagcaaata ccggaaacag atgttacaat taatggttgc
      421 taaaaaagca gtggatgctg aaccagtcct gaaagctcac cagtctcact ctgcagaaat
      481 tgagagtcag atcgacagaa tctgtgaaat gggagaagtg atgaggaaag cagttcaaat
      541 ggatgatgat caattttgta agattcagga aaaactagca caattagagg acgtctagga
      601 gagaagattg agcagagtga aattattatt aggaatttga aagatagaag aaacaatact
      661 aaaacttgtg ggaaccataa aaagtttgac aagcagtgaa ttcctcaagt ggagagggac
      721 cttgtttttt tctgtgtagt cctaacacgt ggcatgtgga aattactcag taaatgtttt
      781 ttaaatgaat aaataagtag aattttagga aattctcagt tcttttgttt ccttaaaact
      841 tttaaaatta aaataatatg ctttctgttt caggcccaaa acaatgtgtt ctgatgcaat
      901 ttgacagtca aaatacc
//
LOCUS       XM_032653123             897 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 190
            (CCDC190), mRNA.
ACCESSION   XM_032653123
VERSION     XM_032653123.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                VOSU01000011.1     120199610-120199684 c
            76-76               "N"                1-1
            77-178              VOSU01000011.1     120199508-120199609 c
            179-302             VOSU01000011.1     120194617-120194740 c
            303-873             VOSU01000011.1     120193766-120194336 c
            874-897             VOSU01000011.1     120193741-120193764 c
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..897
                     /gene="CCDC190"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 76% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116764470"
     CDS             1..897
                     /gene="CCDC190"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; substituted 1 base at 1 genomic
                     stop codon"
                     /codon_start=1
                     /transl_except=(pos:163..165,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: coiled-coil
                     domain-containing protein 190"
                     /protein_id="XP_032509014.1"
                     /db_xref="GeneID:116764470"
                     /translation="MERHMVRGPLQKHFDLERENAKQAEXQRLQRLEDICLYHVKLLT
                     RKQRRLQKELXRLQQDIIKKMFSSYFEKGSQKRPEDVLMFSSQGGQKHRVLQANKFRA
                     LTTKTIQEIYKTKSQMPPFHHTGPKDPMKSKRQSLSQNHRTSHFIEEKPQAQEKYSIN
                     PLKGKDSNKGISLLCQDQDVSTHTLDQGPSSSPAGGSRMAHGDETRSNDANKRPDHTT
                     GKQIPLNPMECGGNFKGEPKTSTYSELFAKARNTHYLRHQVPPESERLLSIGEISGHK
                     ESSQYRAEKGCRNRVPSKLLPL"
     misc_feature    22..816
                     /gene="CCDC190"
                     /note="Coiled-coil domain-containing protein 190; Region:
                     CC190; pfam15768"
                     /db_xref="CDD:464856"
ORIGIN      
        1 atggagaggc acatggtcag gggaccacta cagaagcact ttgatttgga gagggagaac
       61 gccaagcagg ctgaangcca aagactgcag agactagagg atatctgcct ataccatgtg
      121 aagttgttga ccaggaagca gagacggctc caaaaagaac tgtagaggtt gcagcaagat
      181 atcatcaaga aaatgttctc ctcttacttt gagaagggaa gtcaaaagag accagaagat
      241 gttcttatgt tctcatcaca gggaggacag aagcacaggg ttctacaggc taataaattt
      301 agagcactga cgacaaagac gatccaagaa atatacaaaa ccaagtccca gatgcctcct
      361 ttccatcaca ctggtcccaa ggaccccatg aaaagcaaaa ggcagtcgct atctcaaaat
      421 cacagaactt cccactttat agaagagaag ccgcaagccc aagagaaata ttctataaac
      481 ccactgaagg gcaaagactc caacaagggc atctctcttc tatgtcaaga tcaagacgtc
      541 tccactcaca ccctagacca aggccccagt tccagcccag ctggtggtag cagaatggca
      601 cacggcgatg agaccagatc aaatgatgcc aacaaaaggc cagaccacac cactgggaaa
      661 caaattcccc tgaatcccat ggaatgtgga gggaacttca aaggcgagcc caaaacatca
      721 acctattcag agttgtttgc aaaggccaga aacactcact acctccggca ccaggtcccg
      781 cctgagtctg agagattgct tagcattggg gagatctctg ggcacaagga atcctcacag
      841 tacagagcag aaaagggctg tagaaacagg gtgccatcta agttacttcc tctctaa
//
LOCUS       XM_032653134            1875 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeats and IQ motif
            containing 3 (LRRIQ3), mRNA.
ACCESSION   XM_032653134
VERSION     XM_032653134.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1875
                     /gene="LRRIQ3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 26% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764475"
     CDS             1..1815
                     /gene="LRRIQ3"
                     /codon_start=1
                     /product="leucine-rich repeat and IQ domain-containing
                     protein 3"
                     /protein_id="XP_032509025.1"
                     /db_xref="GeneID:116764475"
                     /translation="MFHGTVTEELTNHREWSHYNENIIEDQKDFVFVKFSGLHLKSME
                     SFQSCISLRVCIVSNNFITDIRPLQSCIKLVKLDLHGNHIKSLPDTRFWSRLKNLKLL
                     YLHDNGLAKLKNVCMLSACPSLIALTMFDCPVSLKKGYRHVLVNSIWALKALDHHVIS
                     DEEIIQSWHLPERFKTYNHRLFFNFCPALKKGSTYKDEIDNIKFIISKINEILAHNSP
                     VLIVQRWIRGFLVRKKVSHLFLYKKHQEKTISESEKKWIYKHKGFEDKLFKDLLFHPG
                     TNITEKYARWKHNIHSPVDLKFSSEQRKHVSSILYELKTGKPRHLIQKGQKESEDKIE
                     DEELDVSFRISMFKLPVRTSDSLRYAALLKAKEQDYFPVYTEPLCTTHQKPVIKIKDM
                     LLEKSVRREFFTTQRTGMKLQALYDIDKYCSEQKKQASYKNKVTAVRVAQVAQERVRL
                     TIQENLNKKIYATHKLTARDNKTIQNGLQRLWQDRSNYLEKVKERRVLFLEEKNQKAK
                     DRLLIQNLNNERTLLTKEMTKIDRLKKKQAVLKEKSLVVQQKLATEKYQKDLLKQMKE
                     IRAQEIDKRHCEEKIVNDIIAFQKACERFQDTKTKAAM"
     misc_feature    <130..>405
                     /gene="LRRIQ3"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    154..219
                     /gene="LRRIQ3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    220..294
                     /gene="LRRIQ3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    295..336
                     /gene="LRRIQ3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    <1270..>1752
                     /gene="LRRIQ3"
                     /note="Family of unknown function (DUF5401); Region:
                     DUF5401; pfam17380"
                     /db_xref="CDD:375164"
ORIGIN      
        1 atgtttcatg gaacagtcac agaagagcta accaatcata gagaatggag tcactataat
       61 gaaaatataa tagaagatca aaaagatttt gtttttgtga agttcagtgg ccttcattta
      121 aaatctatgg aaagttttca atcttgtatc tctcttagag tgtgcatcgt ctcaaacaat
      181 tttattacag atattcgtcc acttcagagt tgtataaaat tagtcaaact tgatctccat
      241 ggaaatcaca tcaagagtct accagatacc agattttgga gtagattgaa gaacctaaaa
      301 cttctctatc tacatgacaa tgggcttgca aagttaaaga atgtatgtat gttatctgct
      361 tgtccaagcc tcattgctct cactatgttt gattgtccag taagccttaa aaaaggatat
      421 agacatgttc ttgtcaacag tatatgggct ctcaaagcac tggatcatca tgtgatttct
      481 gatgaagaaa taattcagag ctggcatctt cctgaaagat tcaaaacata taaccaccga
      541 cttttcttta atttctgccc tgctttgaaa aagggatcaa cctataagga tgaaattgat
      601 aatatcaaat ttattatttc aaaaattaat gaaattctgg ctcataactc accagttttg
      661 attgttcaaa gatggatacg tggtttctta gttaggaaaa aagtgagcca cttgttcttg
      721 tataaaaaac atcaggaaaa aactattagt gaaagtgaaa aaaaatggat ttacaaacac
      781 aaaggatttg aagataagct ctttaaggat ctcttatttc atcctggaac caatataaca
      841 gaaaagtatg cacgctggaa acataatata cattctcctg ttgatttaaa attttctagt
      901 gaacagagaa aacatgtttc ttctatttta tatgaattaa aaacaggaaa accaagacat
      961 ctcattcaaa aaggtcagaa agagtctgaa gataaaattg aggatgaaga attggatgtc
     1021 agttttagga tatcaatgtt caaactacca gtacgtactt cagattcact gaggtatgct
     1081 gcattattga aagcaaaaga acaagattat tttcctgtgt ataccgagcc actttgtacc
     1141 actcatcaaa aaccagtaat taaaataaaa gacatgctgt tggagaagag tgtaagaaga
     1201 gagtttttta caacacaaag aactggtatg aaactccaag cactttatga tattgataaa
     1261 tattgctcag aacaaaagaa gcaggcaagc tataaaaata aagtaacagc tgttagagtg
     1321 gcacaagtgg cccaagaacg agttagatta actattcaag aaaatttaaa taagaaaata
     1381 tatgctacgc ataaactaac tgcaagagat aataagacca ttcagaatgg tttacaacga
     1441 ctttggcagg acagatccaa ctaccttgag aaagttaaag agaggagagt cctgtttctg
     1501 gaagaaaaaa accaaaaggc taaagaccgt ttattaattc aaaacttaaa taatgagcgc
     1561 actcttttga ccaaagaaat gactaaaatt gacagattga agaagaagca ggctgtctta
     1621 aaagagaaga gcctagttgt tcagcaaaaa ctggcaactg aaaaatatca aaaggattta
     1681 cttaaacaaa tgaaggaaat tagggctcaa gaaatagata aaagacactg tgaagaaaag
     1741 attgttaatg atataattgc ctttcaaaaa gcttgtgaaa gatttcaaga tactaaaaca
     1801 aaagctgcaa tgtgaaaaga atttaatcct taaagttccc gatggaatga caaagtgaac
     1861 caatgccaga tcaca
//
LOCUS       XR_004352894             733 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764480
            (LOC116764480), transcript variant X1, ncRNA.
ACCESSION   XR_004352894
VERSION     XR_004352894.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..733
                     /gene="LOC116764480"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764480"
     ncRNA           1..733
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764480"
                     /product="uncharacterized LOC116764480, transcript variant
                     X1"
                     /db_xref="GeneID:116764480"
ORIGIN      
        1 tggggcggag gcttgtatat agccgggact gggtatgaag ttgaggtcta attggatgta
       61 tgtgacctat tgatttgggg cgggttatag gacaaaggat tgatttggaa gaaaaagcaa
      121 gctgtggggt cacagggctt aggtgagggg aagcatgtag tttgaacgat gttagaaggt
      181 gccagagagg gcaaggctaa agagagtgtg caaaaagttt tgtagatgta tttatcacct
      241 atgatggtgg tgagggggga aaaataggaa ctttactttc ctgaacagta aaacgaattc
      301 aatcagagaa ccgggaatgg aatagggtat gaaactgaga aggaaaataa gtgacacttt
      361 aaacgtgaag aagaaaaatt ggctaagaga aaaaggaaca ccagaaatta ctcctttatt
      421 gagggcagtg ttagccaaag gagaggttct ggtaagaatt aggtttcata actagatttt
      481 ccttatctcc taatttaaga aaatgagagg atagaaggag ttggggggca gtagcttgtt
      541 attcaactgc agaagaaaga acaaagataa tctctggttg aaggaatcta ctctgcacct
      601 aggtactgcg agattcagaa gattatcaga tttttatatt ttacagggga acaccagggc
      661 tagttcctaa caataccgaa gccttaaggt tgcagagcac aggctccaga cgcacaggcg
      721 cagcggccat ggc
//
LOCUS       XR_004352895             166 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764480
            (LOC116764480), transcript variant X2, ncRNA.
ACCESSION   XR_004352895
VERSION     XR_004352895.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..166
                     /gene="LOC116764480"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764480"
     ncRNA           1..166
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764480"
                     /product="uncharacterized LOC116764480, transcript variant
                     X2"
                     /db_xref="GeneID:116764480"
ORIGIN      
        1 ccgggactgg acttggcagg tggacgtgcg gagccggatc agggtcttgc aatagacgcg
       61 ggtctagatt tttatatttt acaggggaac accagggcta gttcctaaca ataccgaagc
      121 cttaaggttg cagagcacag gctccagacg cacaggcgca gcggcc
//
LOCUS       XM_032653153            1151 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor subfamily 0 group B
            member 2 (NR0B2), mRNA.
ACCESSION   XM_032653153
VERSION     XM_032653153.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1151
                     /gene="NR0B2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764488"
     CDS             10..792
                     /gene="NR0B2"
                     /codon_start=1
                     /product="nuclear receptor subfamily 0 group B member 2"
                     /protein_id="XP_032509044.1"
                     /db_xref="GeneID:116764488"
                     /translation="MSSSQPGTCPCQGAAGRPTILYALLSPSVRDWPSVPPARGHCLC
                     RQHRPVRLCTPHRTCREALDVLAKTLAFLRNLPSFCQLPPQDRRQLLQCCWGPLFLLG
                     LAQDTVTFEVAELPVPSILKKILLEEPTSGAGNGQVLDRPQPSLAAVQWLQCCLESFW
                     SLELGPKEYAYLKGTILFNPDVPGLHASSHIGHLQQEARQALWEVLEPWCPAGQSRLA
                     RVLLTASTLKSVPPSLLGDLFFHPVIGDVDIAGLLEDMLLLR"
     misc_feature    112..780
                     /gene="NR0B2"
                     /note="The ligand binding domain of nuclear receptors, a
                     family of ligand-activated transcription regulators;
                     Region: NR_LBD; cl11397"
                     /db_xref="CDD:472173"
     misc_feature    order(181..186,193..195,202..207,292..297,304..309,
                     316..318,325..327,463..465)
                     /gene="NR0B2"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132726"
     misc_feature    order(208..210,217..219,229..231,244..246,259..264,
                     268..273,280..285)
                     /gene="NR0B2"
                     /note="coregulator recognition site [active]"
                     /db_xref="CDD:132726"
ORIGIN      
        1 tcctcaacca tgagctccag ccagccaggg acctgcccat gccagggtgc tgcaggccgc
       61 ccaaccattc tgtatgcact tctgagcccc agcgtcaggg actggccctc tgtgccccca
      121 gcccgtggcc actgcctgtg caggcagcac cggcccgtcc ggctgtgtac tccccatcgc
      181 acctgccggg aggccttgga tgttctggcc aagacgttgg ctttcctcag gaacctgccg
      241 tccttctgcc agctgccccc ccaggatcgg cgacagctgc tgcagtgctg ctggggcccc
      301 ctcttcctgc ttgggttggc ccaagacact gtgaccttcg aggtggctga gctcccagtt
      361 cccagcatac tcaagaagat cctgctggag gagcccacca gcggtgcagg caatggccag
      421 gtgttggatc ggccccagcc ctcactggct gcagtgcagt ggcttcagtg ctgcctggag
      481 tccttctgga gtctggagct gggccccaaa gaatatgcct acctgaaagg gaccatcctc
      541 ttcaaccctg acgtgccagg cctccacgcc tcctcccaca ttgggcacct gcagcaggag
      601 gcgcgccagg ccctgtggga ggtcctggag ccctggtgcc cagcaggcca aagccgcctg
      661 gctcgtgtcc tcctcacggc ctccactctc aagtctgttc cacccagcct gcttggagac
      721 ctgttctttc accctgtcat tggagacgtt gacatcgctg gcctcctcga agacatgctt
      781 ttgctgaggt gacctgctcc agctcaagca gagactgggt ggaggctggc agcactgatt
      841 aggcctggtc gttccctggg tgacccagtg ttcccagagg cttcccatga gcagctggtc
      901 ccggcccagc caggtgggct atggggccct cactcagccc aaccccatct tggccttcct
      961 cagtttggac acagtgctcc agctgtctgg ccagcccttg gtggtcccac agcctctggg
     1021 ccaagactcc tatcccttcc tgggacgggg ttggaagttt cgactgctca ttgggccagg
     1081 agtcctattg actttgtaca gaactgactt aagttattgg gttttgtaat aaaaggtgtg
     1141 atacacttgg a
//
LOCUS       XM_032653165            1724 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TATA-box binding protein associated
            factor, RNA polymerase I subunit A (TAF1A), transcript variant X1,
            mRNA.
ACCESSION   XM_032653165
VERSION     XM_032653165.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1724
                     /gene="TAF1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764495"
     CDS             111..1463
                     /gene="TAF1A"
                     /codon_start=1
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit A isoform X1"
                     /protein_id="XP_032509056.1"
                     /db_xref="GeneID:116764495"
                     /translation="MSDFSEELIRPTTEDEQGEPRAPSGTGMCFPWLQKHIETIATGG
                     KQEKDFAQTTSACLSLIQEALLKHQWQRAAEYMHSYFQILEDSDSNKRQIAPEIIWRL
                     GSEILYYHPKSSVETFNTFADRMKNIGVMNYLKISLQHALYLLHHGMLEDANRNLSQA
                     ETWRYGEKSSSQEVLINLIQAYKGLLQYYIWSKKKMELSQLDEDDYAYNTASQNMLNH
                     SWKTSINLCALIQIPGVWDPFVKSYVEMLEFYGDQDGAREVLTNYAYDEKFPSNPNAH
                     IYLYNFLKREKAPREKLISVLKILYQIVPSHKLMLEFHRLLRKSENEEHHKLGLEVLF
                     GVLDFAGCTKNITAWKYLARYLRQTLMGSHLAWVQEEWNSRKNWWPSFHFSYFWAKSD
                     WKEDKALACEKALVAGLLLGKGCRYFRNISKQDHQVLKKKIKQMKKSVKKYSIVNPGL
                     "
     misc_feature    297..1379
                     /gene="TAF1A"
                     /note="TAF RNA Polymerase I subunit A; Region: TAF1_subA;
                     pfam14929"
                     /db_xref="CDD:434323"
ORIGIN      
        1 ttcgctctca agccgctaac tctgtgagag tttgcccacg ctcgtccgca gtctggagac
       61 tgagtttggt gtcgcagaag aactctggct ttagtcagtc tggaataggt atgagtgatt
      121 tcagtgaaga attgataagg cccacaacag aggatgaaca gggggaaccg cgtgcgccct
      181 ctggtacagg gatgtgtttt ccttggctcc aaaagcatat agaaaccata gcgactggag
      241 gaaaacagga gaaggatttt gctcagacaa caagtgcttg tttaagtctt atccaagaag
      301 ctctgctgaa gcaccagtgg cagcgagctg cagaatacat gcacagttac tttcagatct
      361 tggaagattc agatagcaac aagagacaga ttgcaccaga gattatttgg aggcttggaa
      421 gtgaaattct ttattatcat cccaaaagca gtgtggagac tttcaatacc tttgctgacc
      481 ggatgaaaaa tattggtgtc atgaattact tgaagatctc cttacaacat gcattatacc
      541 ttctgcatca tggtatgctt gaggatgcga acagaaatct cagccaggca gagacatggc
      601 gatacggtga aaagtcgtct tctcaggaag tgttaatcaa ccttattcaa gcctataaag
      661 ggcttttgca gtattatatt tggtctaaaa agaagatgga attgtctcag cttgatgagg
      721 atgattatgc ttacaacaca gcgtcccaga atatgctcaa ccacagctgg aagacatcta
      781 taaacctttg tgcattgatt caaattcctg gagtttggga cccttttgtg aagagttatg
      841 tagagatgct ggaattctat ggggatcaag atggagcccg agaggttctt accaattacg
      901 cctatgatga aaagttccca tcaaatccaa atgctcatat ctacttatac aactttttaa
      961 agagagagaa ggcaccaaga gagaaactga taagtgtgct taagattttg tatcagattg
     1021 taccatctca taaactgatg ttagaattcc atagattact gagaaaatca gaaaacgaag
     1081 aacaccataa actggggttg gaggtattat ttggagtctt agattttgct ggatgcacta
     1141 aaaatataac tgcttggaaa tatttggcaa gatatctcag acagacttta atggggagtc
     1201 atcttgcctg ggttcaagaa gagtggaact ccaggaaaaa ctggtggcca agctttcact
     1261 tcagctactt ttgggcaaaa agtgattgga aggaagataa agctttggct tgtgagaaag
     1321 ctttggtagc tgggttattg ttaggaaaag gttgtagata ctttcggaat atttcaaaac
     1381 aagatcatca agtcttaaag aagaaaatta agcagatgaa gaaatcagtg aaaaaataca
     1441 gcattgtaaa tccaggactc tgatactgaa ttttagttac ttcagattag tagctacaga
     1501 atagtaactc agttgatagc tttaaatgta tttatttatt tgatatttta agaaggtagc
     1561 ttatttggct atgaaaaagt tatattttct tttactatcg gttatagctg aagaaacagt
     1621 ctcattgcct ttgctctttg taaatatatt tttccttttt ttttgtactg ttaaatgtaa
     1681 catttattaa ggaataatct tcaaataaaa atatatttgt ttaa
//
LOCUS       XM_032653174            1702 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TATA-box binding protein associated
            factor, RNA polymerase I subunit A (TAF1A), transcript variant X2,
            mRNA.
ACCESSION   XM_032653174
VERSION     XM_032653174.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1702
                     /gene="TAF1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764495"
     CDS             89..1441
                     /gene="TAF1A"
                     /codon_start=1
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit A isoform X1"
                     /protein_id="XP_032509065.1"
                     /db_xref="GeneID:116764495"
                     /translation="MSDFSEELIRPTTEDEQGEPRAPSGTGMCFPWLQKHIETIATGG
                     KQEKDFAQTTSACLSLIQEALLKHQWQRAAEYMHSYFQILEDSDSNKRQIAPEIIWRL
                     GSEILYYHPKSSVETFNTFADRMKNIGVMNYLKISLQHALYLLHHGMLEDANRNLSQA
                     ETWRYGEKSSSQEVLINLIQAYKGLLQYYIWSKKKMELSQLDEDDYAYNTASQNMLNH
                     SWKTSINLCALIQIPGVWDPFVKSYVEMLEFYGDQDGAREVLTNYAYDEKFPSNPNAH
                     IYLYNFLKREKAPREKLISVLKILYQIVPSHKLMLEFHRLLRKSENEEHHKLGLEVLF
                     GVLDFAGCTKNITAWKYLARYLRQTLMGSHLAWVQEEWNSRKNWWPSFHFSYFWAKSD
                     WKEDKALACEKALVAGLLLGKGCRYFRNISKQDHQVLKKKIKQMKKSVKKYSIVNPGL
                     "
     misc_feature    275..1357
                     /gene="TAF1A"
                     /note="TAF RNA Polymerase I subunit A; Region: TAF1_subA;
                     pfam14929"
                     /db_xref="CDD:434323"
ORIGIN      
        1 ccgctaactc tgtgagagtt tgcccacgct cgtccgcagt ctggagactg agtttggtgt
       61 cgcagaagaa ctctggcttt agtcaggtat gagtgatttc agtgaagaat tgataaggcc
      121 cacaacagag gatgaacagg gggaaccgcg tgcgccctct ggtacaggga tgtgttttcc
      181 ttggctccaa aagcatatag aaaccatagc gactggagga aaacaggaga aggattttgc
      241 tcagacaaca agtgcttgtt taagtcttat ccaagaagct ctgctgaagc accagtggca
      301 gcgagctgca gaatacatgc acagttactt tcagatcttg gaagattcag atagcaacaa
      361 gagacagatt gcaccagaga ttatttggag gcttggaagt gaaattcttt attatcatcc
      421 caaaagcagt gtggagactt tcaatacctt tgctgaccgg atgaaaaata ttggtgtcat
      481 gaattacttg aagatctcct tacaacatgc attatacctt ctgcatcatg gtatgcttga
      541 ggatgcgaac agaaatctca gccaggcaga gacatggcga tacggtgaaa agtcgtcttc
      601 tcaggaagtg ttaatcaacc ttattcaagc ctataaaggg cttttgcagt attatatttg
      661 gtctaaaaag aagatggaat tgtctcagct tgatgaggat gattatgctt acaacacagc
      721 gtcccagaat atgctcaacc acagctggaa gacatctata aacctttgtg cattgattca
      781 aattcctgga gtttgggacc cttttgtgaa gagttatgta gagatgctgg aattctatgg
      841 ggatcaagat ggagcccgag aggttcttac caattacgcc tatgatgaaa agttcccatc
      901 aaatccaaat gctcatatct acttatacaa ctttttaaag agagagaagg caccaagaga
      961 gaaactgata agtgtgctta agattttgta tcagattgta ccatctcata aactgatgtt
     1021 agaattccat agattactga gaaaatcaga aaacgaagaa caccataaac tggggttgga
     1081 ggtattattt ggagtcttag attttgctgg atgcactaaa aatataactg cttggaaata
     1141 tttggcaaga tatctcagac agactttaat ggggagtcat cttgcctggg ttcaagaaga
     1201 gtggaactcc aggaaaaact ggtggccaag ctttcacttc agctactttt gggcaaaaag
     1261 tgattggaag gaagataaag ctttggcttg tgagaaagct ttggtagctg ggttattgtt
     1321 aggaaaaggt tgtagatact ttcggaatat ttcaaaacaa gatcatcaag tcttaaagaa
     1381 gaaaattaag cagatgaaga aatcagtgaa aaaatacagc attgtaaatc caggactctg
     1441 atactgaatt ttagttactt cagattagta gctacagaat agtaactcag ttgatagctt
     1501 taaatgtatt tatttatttg atattttaag aaggtagctt atttggctat gaaaaagtta
     1561 tattttcttt tactatcggt tatagctgaa gaaacagtct cattgccttt gctctttgta
     1621 aatatatttt tccttttttt ttgtactgtt aaatgtaaca tttattaagg aataatcttc
     1681 aaataaaaat atatttgttt aa
//
LOCUS       XM_032653180            2390 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TATA-box binding protein associated
            factor, RNA polymerase I subunit A (TAF1A), transcript variant X3,
            mRNA.
ACCESSION   XM_032653180
VERSION     XM_032653180.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2390
                     /gene="TAF1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764495"
     CDS             87..1337
                     /gene="TAF1A"
                     /codon_start=1
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit A isoform X2"
                     /protein_id="XP_032509071.1"
                     /db_xref="GeneID:116764495"
                     /translation="MPLLRPATGGKQEKDFAQTTSACLSLIQEALLKHQWQRAAEYMH
                     SYFQILEDSDSNKRQIAPEIIWRLGSEILYYHPKSSVETFNTFADRMKNIGVMNYLKI
                     SLQHALYLLHHGMLEDANRNLSQAETWRYGEKSSSQEVLINLIQAYKGLLQYYIWSKK
                     KMELSQLDEDDYAYNTASQNMLNHSWKTSINLCALIQIPGVWDPFVKSYVEMLEFYGD
                     QDGAREVLTNYAYDEKFPSNPNAHIYLYNFLKREKAPREKLISVLKILYQIVPSHKLM
                     LEFHRLLRKSENEEHHKLGLEVLFGVLDFAGCTKNITAWKYLARYLRQTLMGSHLAWV
                     QEEWNSRKNWWPSFHFSYFWAKSDWKEDKALACEKALVAGLLLGKGCRYFRNISKQDH
                     QVLKKKIKQMKKSVKKYSIVNPGL"
     misc_feature    171..1253
                     /gene="TAF1A"
                     /note="TAF RNA Polymerase I subunit A; Region: TAF1_subA;
                     pfam14929"
                     /db_xref="CDD:434323"
ORIGIN      
        1 gtcagggaat tagatcctgc atgcggcaac taaaagatct ggcacacagc aactgaagat
       61 cccgcgtgct gcaatgaaga tgctgcatgc cactactaag acccgcgact ggaggaaaac
      121 aggagaagga ttttgctcag acaacaagtg cttgtttaag tcttatccaa gaagctctgc
      181 tgaagcacca gtggcagcga gctgcagaat acatgcacag ttactttcag atcttggaag
      241 attcagatag caacaagaga cagattgcac cagagattat ttggaggctt ggaagtgaaa
      301 ttctttatta tcatcccaaa agcagtgtgg agactttcaa tacctttgct gaccggatga
      361 aaaatattgg tgtcatgaat tacttgaaga tctccttaca acatgcatta taccttctgc
      421 atcatggtat gcttgaggat gcgaacagaa atctcagcca ggcagagaca tggcgatacg
      481 gtgaaaagtc gtcttctcag gaagtgttaa tcaaccttat tcaagcctat aaagggcttt
      541 tgcagtatta tatttggtct aaaaagaaga tggaattgtc tcagcttgat gaggatgatt
      601 atgcttacaa cacagcgtcc cagaatatgc tcaaccacag ctggaagaca tctataaacc
      661 tttgtgcatt gattcaaatt cctggagttt gggacccttt tgtgaagagt tatgtagaga
      721 tgctggaatt ctatggggat caagatggag cccgagaggt tcttaccaat tacgcctatg
      781 atgaaaagtt cccatcaaat ccaaatgctc atatctactt atacaacttt ttaaagagag
      841 agaaggcacc aagagagaaa ctgataagtg tgcttaagat tttgtatcag attgtaccat
      901 ctcataaact gatgttagaa ttccatagat tactgagaaa atcagaaaac gaagaacacc
      961 ataaactggg gttggaggta ttatttggag tcttagattt tgctggatgc actaaaaata
     1021 taactgcttg gaaatatttg gcaagatatc tcagacagac tttaatgggg agtcatcttg
     1081 cctgggttca agaagagtgg aactccagga aaaactggtg gccaagcttt cacttcagct
     1141 acttttgggc aaaaagtgat tggaaggaag ataaagcttt ggcttgtgag aaagctttgg
     1201 tagctgggtt attgttagga aaaggttgta gatactttcg gaatatttca aaacaagatc
     1261 atcaagtctt aaagaagaaa attaagcaga tgaagaaatc agtgaaaaaa tacagcattg
     1321 taaatccagg actctgatac tgaattttag ttacttcaga ttagtagcta cagaatagta
     1381 actcagttga tagctttaaa tgtatttatt tatttgatat tttaagaagg tagcttattt
     1441 ggctatgaaa aagttatatt ttcttttact atcggttata gctgaagaaa cagtctcatt
     1501 gcctttgctc tttgtaaata tatttttcct ttttttttgt actgttaaat gtaacattta
     1561 ttaaggaata atcttcaaat aaaaatatat ttgtttaatc agagcatata gctctacagc
     1621 agttattgct gtttgcagat aatttgcctc tgataattgt gtaatgaaat ataacttgtg
     1681 ggactgttaa atgagcgtgt gtattcgttt agatgcaaat ggtctatgtt aggtttacca
     1741 ccatgaagaa catattggtg atgaattctg ttgaggaaac agagaaggat ttagaaaaga
     1801 actccttctc tttctctttt ggtagtaaga catggcagtg tggagttaag tgacctctgg
     1861 tagagagcta cctttgactc tggaggactc atttgggtca gagagggtag gaggggcctg
     1921 gttgctttta gctggcactg gcctaacttt aaaggattct agctttgttg gttttgcttg
     1981 tttgccttgc acagcaatct aagacatgtt ctagaactac tgtgtccctc tccttgctct
     2041 tggaaaccag aatgcaaaag taggtagctg gacagtggag aaatagtgtc ccagggtcat
     2101 acaggaagcc cattggaaag ctttgctcag aagccaagaa caactttcct ggaatatcag
     2161 ctgagctttc taatatgttg tggtaactgg tggagtaagt gcttcttgaa aactgtcttg
     2221 gctcatatac atttactgtt cagataacta gtatttgagt tccatgaagg ctccttaact
     2281 tcagagcaag tccaatatta aggtggcaaa ccgcacgttt tccccattgg cttatattcc
     2341 taccaatttc aaaccatctg tcagaaaatt aggggacaaa ttatgctttg
//
LOCUS       XM_032653189            5300 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nucleolar protein 9 (NOL9), mRNA.
ACCESSION   XM_032653189
VERSION     XM_032653189.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5300
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5300
                     /gene="NOL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 21 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764506"
     CDS             28..2100
                     /gene="NOL9"
                     /codon_start=1
                     /product="polynucleotide 5'-hydroxyl-kinase NOL9"
                     /protein_id="XP_032509080.1"
                     /db_xref="GeneID:116764506"
                     /translation="MADSLLLFKRGPSRSTWLRARKARPHLILSYRPRRRLGRLRWRS
                     RRRFRRRLLQAQAAGVDWREGGCLVSRAAAPRRPKTAAPSPRLAKDPAPSCSAILPIP
                     PVRSAGSGRAVLLLPLGQGFTFSGICRVTCLYGQVQVFGFTISQGQPAQNVFSTYTHS
                     RLTINAVHYSVHEKSKKEMKREARSLLRSYLNQDDRYCLMKNFSPLCSILLLERLKTS
                     TVNFIISHPGLSYVFVQEIPTFQINSEYFALKSVGIRRERKKNGLRLTESAFSVMEEL
                     VSISCEEADGCPVILVCGSQDIGKSTFIRYLINQLLNSISCIDYLECDLGQTEFTPPG
                     CISLLNVTEPVLGPPFTHQRTPQNMVYYGKPSCKNSFENYIEIIKYVFSSYKRESPLI
                     VNTMGWVADQGLLLLIDLIRLLSPSHVVQFSSDRGRYMPDLSPSYVDSMDGLYTKSTS
                     KVRNRGFHLAEFADSLEFADEEKENPLLFTGYKLMSVKSEFVSGKTPRNRESHNKVLR
                     ELAVLSYLGQLQPPVPKPLCPLHGLTPYQVPFNAVALRIIHADVAPTHILYAVNASWV
                     GLCKILDDVRGYASGPILLAQTPICDCLGFGICRGIDMEKRLYHILTPVPPEELRNVN
                     CLLVGTISIPQCVLKSQRGLEGTIPYITTDYNFKLPGASEKIGARETEETRKEKVHPK
                     PKFYRKTN"
     misc_feature    883..1929
                     /gene="NOL9"
                     /note="Pre-mRNA cleavage complex II protein Clp1; Region:
                     Clp1; cl42059"
                     /db_xref="CDD:477931"
     misc_feature    907..>1305
                     /gene="NOL9"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; Region: P-loop
                     containing Nucleoside Triphosphate Hydrolases; cl38936"
                     /db_xref="CDD:476819"
ORIGIN      
        1 gtcgaggagc aggcgccagt gggcagcatg gccgactcgt tgctgctgtt taagaggggt
       61 ccttctcgct ccacgtggct gcgggcccgc aaggcccggc cgcacctcat cctcagctac
      121 cggccccgcc gccggctcgg gaggctgcgc tggcgcagcc gaaggcgctt tcggcggcga
      181 ctgctgcagg cccaggcggc cggcgtggac tggcgggagg gcggctgcct ggtgtcgcgt
      241 gcggcggcgc cccggaggcc caagaccgcg gcccccagtc cccgcctggc caaggatccg
      301 gccccgagtt gttccgcgat cctccccatc ccgcctgtgc ggtcggccgg ctcgggccgc
      361 gccgtgttgc tgctgccgct ggggcagggc tttactttta gcgggatctg tcgtgtgacc
      421 tgcctctatg gccaggtgca ggtgtttggt tttaccatca gccaaggcca acctgcccaa
      481 aatgtcttct ctacctatac ccactctcgc ctgactatca atgcagttca ttactcagtg
      541 catgagaaaa gcaagaagga gatgaaaagg gaagcccgaa gtttgctcag atcttatctg
      601 aaccaagacg acagatactg tttgatgaag aatttttctc ctctgtgttc cattctgttg
      661 ctggaacgtc tgaaaacctc cactgtgaac ttcataatca gccatccagg tttatcttac
      721 gttttcgtac aagagattcc aactttccag attaactctg agtatttcgc cttgaaatct
      781 gtcggcatta gaagagagag aaaaaaaaac ggccttcgtt taacggagag tgccttttca
      841 gtcatggaag agttagtcag catttcttgt gaagaagcag acggctgccc tgtcattctg
      901 gtttgtggct ctcaggacat tggaaagtca acatttatta gatacctgat taaccagttg
      961 ttaaatagta tatcctgcat tgactatttg gaatgtgacc tgggacagac agaatttact
     1021 ccaccaggtt gcatttctct acttaatgtt acagaaccgg ttctaggacc acctttcacc
     1081 caccagagga caccccagaa catggtctat tatgggaagc cttcttgtaa aaacagcttt
     1141 gaaaattata ttgagataat aaagtatgtg ttcagctcct acaagagaga gtcccctctt
     1201 atcgtcaaca cgatgggctg ggtggcagac cagggtctcc tgcttcttat tgacctgatc
     1261 cgactgctgt ctcccagcca cgtcgttcag ttcagctccg accggggtag gtacatgcca
     1321 gacctcagcc caagctacgt ggacagcatg gacggcttgt acacaaagag cacgtccaaa
     1381 gtcagaaaca gaggattcca cctggcagaa tttgcagaca gtttagaatt tgctgacgaa
     1441 gaaaaggaga atccacttct ctttactgga tacaaactga tgtccgttaa gtcggagttt
     1501 gtgtctggaa aaactccaag aaatagagaa tcacataaca aagtccttcg cgagttggca
     1561 gtgctgagtt accttggcca gctgcagccc ccagtgccaa agccactgtg tcccttacat
     1621 ggtctgacac cctatcaggt ccctttcaat gctgtggcac tccggattat ccacgctgat
     1681 gtcgctccta cccacatatt atacgctgtg aatgccagct gggttgggct ttgcaagatc
     1741 ctggatgatg tcagaggata tgcaagtggg cccatcctgc ttgcccagac gcccatctgt
     1801 gattgtttgg ggtttggaat ttgtagaggg atcgacatgg agaagaggct ttaccacatc
     1861 ctcactcctg tgcccccaga agagctaaga aacgtgaact gtctgctggt tggaaccatt
     1921 tccattccac agtgtgttct caagagccag cgtgggctcg aagggacgat accttacatc
     1981 acaacagatt ataattttaa acttcctgga gcatcagaga aaattggagc aagagaaact
     2041 gaggaaacac gtaaagagaa agtgcacccc aaacctaaat tctatcgaaa aacaaactga
     2101 tcctgatgtt cttaataagg gaaggacctt ttcttccgag agcttgactc tgtctccagg
     2161 ctggcaccag cggactgatg gggttctgtg gccacgaacg gaacggcgcg cttacgtagc
     2221 aaatggtgca gtgttttctg cataactcgt ggatatgttt agagtacatt taagtctgtt
     2281 cttaagtcga catgacctag aggtttgccc tggtcttctg ttttattttc taagggagta
     2341 aagcagcagg gaagagtttg tgcgccattg aaacagaaag aacatggtag attcctcgta
     2401 aagtttttgc aggacctggt tgttggcatc tggataaaaa tagagtaatg ggagccacag
     2461 aaacatccca aggaggaagg cagtctggcc agcaggatgg agggcatagc ggaatgtggt
     2521 ggcgccctgt ggtccttccc ccccggggcg gggggcgttc ccatccctgc gcgttggatg
     2581 ctctccaacc ccgtccatgc gtgtgggcca agggttaagc ctctgtttgg tctgttaaag
     2641 gtaatcaatg tttcagagat aaaagtttga ctccagagcc cttcttcttc ctttttaaaa
     2701 tctgatgctg aaaaatttta tgctgaaaaa atgctctcaa atccaggaag cctgtcttgg
     2761 ggcctcttta aaaccagatt tgtcctaatt gacttcacat ctgagattaa aaacgcacag
     2821 tgggcagagc cagacactag gctgtttgga ggaaggaccg ggggagcagc tcatcgtgct
     2881 cttgggctcg gtggctggac ctgaactctg tgtcggtgat ggtgctgttc tcccaggggg
     2941 ctttggggcc aacgatggaa ctccatcttc tccctggtgg tcaggattct ttaacctccc
     3001 aggttggaag tggttttggt aaacaatccg gacagccagg tcaggtcacc atttctgcgt
     3061 ttaggacgct gaggtagcct ttcaaactgg tgttgtgaat tccagcttcc tagcagaatg
     3121 tgttgaagga cagctattag gatgtgtggg ttttaatgtt tacattcatt taaactgttg
     3181 actgtcattg tcttaagtac tcacgtggct tctcatctca tcttgtagag cccttgtcac
     3241 cgtccaggat caggtgtgat accctagaga ccatttaatg tctagcttcc cttttttttt
     3301 tttttgcagt gggaaccatt taatctgcat acggagactt gtatttactg tgattgtttc
     3361 taccagagga acaaaggggg ccctgcagga agggcttctt ttttaaataa gatttattat
     3421 ttttttttat acagcaggtt ctcattagtt atccatttta tacatattag tgtatacatg
     3481 tcaatcccaa tcgcccagtt catcccaccc ccccacccta atgtctagct tcttagttgc
     3541 ttcttattta tatctaaatt taacttgtac atggttttct ttcttggcct tgcaaagact
     3601 attaacagac aatccaccat caactttttg cctccttccc aagttcctgt acctttacaa
     3661 taatactgta ggtctttagc agcaagtggt ggcctgtcat ttgcgttttc attaaatcca
     3721 ggctcgcttt ttgcctgttt cctgctgacc attaaggctg cgggcttcag tccccatcgg
     3781 taaagaaaac aaacgttgcc gctagaggga gctgtcagcc attggtcagc tggccatacg
     3841 gaggctggag atggcctggc caaggagccc acctaggcct ctgtcagcat ccagggatgc
     3901 tggagacagg gcgctgtggt cagctccagg tgtgccagtc agactggcaa cggtgcatcc
     3961 acctggtgtg tttgactatc agtggcgatg gtttgggctt tctgtcattt ccactgtctg
     4021 tgatggctca ggatgggtag tgacagttct gcattggaga tactcttaac aaaaactcag
     4081 tcatttctgt gtgtgatttt taaagcagta catgcttatt ttaagaaaat taaaggaata
     4141 tatgacttag aacaagaacc cttagtcact gattttgtgg ttctggaaaa tcagctctca
     4201 gatagatctg tttccaggac aggtagacat gaaaatgaaa agattctcca attctaggat
     4261 tgattttatt ttgtgaagac aggtagttct gtttccatct gtcccccgat aggcgttggg
     4321 ggcagacacc actgtatcct ctgaggcccc agattagaac tgaggactta ggaaagggga
     4381 gacgggtcgg tgaactgcct cttgaggtgc cttggtgttt gaaaaatcgg atcctggaag
     4441 tagctggcca gagaggacat gggggtggtg gggtcccggc tgccgctcct ggggtccctg
     4501 tgacaggcgg gtcctcaccc ttctgggcac tcaggtttct gcccgacaga cggcgagagg
     4561 accgagggac gtgggacggt gattattaaa gcgtctggta gttgtttccc ttagatttcg
     4621 ttgaggccat gtcgtggtta aggcagcagg ctttgatgtt ggagctctga gttcaccttc
     4681 tggctgggcc actggctagc agtgtagctc tgagggcgta tttaacctga gcctgtgtcc
     4741 tctaagatgg gcggatagcg cttccctcgg ggcccctgcg tgaggagggc gagaggcgtg
     4801 tctacagcag gcgaagcagt aactcttagc atgcggcctg tctctaaggg ttgtaaatcc
     4861 agaaggcagg accacgatcg tatccctcac agtcacaccg ggacaaagca gaaactgtcg
     4921 gcaccggaaa ccatcttacc cggcagtccc cgggcaggtt tcccttaaca gcgttcttcc
     4981 tgctgtgggt cctgcccagg gctccagaga ggaaggtccc agggcttcca ccgatcaccc
     5041 gctcctggga gtttctcata aaccctgcta actgctttta aaattgtgtg accagttcac
     5101 ccatgtagga aatgatcctg aagtccaccg ccgcggaatc cctgtggatg ctgtgatact
     5161 gtctcgtcca gtatttttct aaaatgcaca tgtgtgtttg ttttataaaa ctggtgttca
     5221 actgtatgtg tggtttctat ccagcccttt tcacttaata tgtgaacttc tgtatcatta
     5281 aatatttttg agaatgtgaa
//
LOCUS       XM_032653199            3594 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KTI12 chromatin associated homolog
            (KTI12), mRNA.
ACCESSION   XM_032653199
VERSION     XM_032653199.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3594
                     /gene="KTI12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 long SRA reads, 2
                     Proteins, and 89% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764516"
     CDS             1951..3015
                     /gene="KTI12"
                     /codon_start=1
                     /product="protein KTI12 homolog"
                     /protein_id="XP_032509090.1"
                     /db_xref="GeneID:116764516"
                     /translation="MPLVVFCGLPYSGKSRRAEELRVALAAEGCAVYVVDDAEVLGAE
                     DATVYGDSAREKALRGALRAAVERRLSRHEVVILDSLNYIKGFRYELYCLARAARTPL
                     CLVYCVRPGGLSGGPRVAGADESASRNVSVSWRPRAEEGGRPLAAGTGVLGEPQAVES
                     VISGRAQAEVPKELEREETRTPDFPALVTSEFEKSAEHVSGAFYPPELLEALALRFEA
                     PDSRNRWDRPLFTLVGLEEPLPLSEIRAALFENRAPPPHQSTQSQPLASGTFLHQLDQ
                     VTSQVLAGLMEAQKSAVPGDLLKLSGTTEHLRFTRPLTMAELSRLRRQFISYTKMHPN
                     NENLPQLANMFLQYLSQSLH"
     misc_feature    1957..3000
                     /gene="KTI12"
                     /note="Chromatin associated protein KTI12; Region: KTI12;
                     pfam08433"
                     /db_xref="CDD:400643"
ORIGIN      
        1 cggatgggct gagtagcact tggaaaccgc gcggactttc tgctaggact cgggccctac
       61 gtctgctcag ccccgtggct ccgcgcacct accaccatgg agctgcggcc tcgtctcgga
      121 gccacctgtt tgctgggctt cagtttcctg ctcctcgtca cctcttctga tggacataat
      181 gggcttggaa agggttttgg agatcacatt cattggagga cactagaaga tgggaagaaa
      241 gaagcagctg ccaggtacaa gatatggttt taggttactt atggtggtaa aacactttcc
      301 agccatcaac ttagcattaa tttcaggtga aggattatgc caaggcagag caatggaggg
      361 gctgcctgat aagaacaaaa ataataatac tacctaacat ttattaagtg cttactatgc
      421 accagacatt gaattatgtg aattaactca tttaattctc acaacaactc ttttgaggtg
      481 ggtactgttg ttatcttcat tttacagatg agaaaactaa ggcatagatc agttaaataa
      541 cttgcccaag atcacacagc taattaagtg gtggagccaa gatctggacc cagacactct
      601 ggcttcagag cctacactca accagtaagc catactgcct aatagtctca agttccaagt
      661 agctttagtc tattcacaga agacttatac aaaggaggag aaaaaggcag aacaggggag
      721 gaaaggctaa acattgatct gagtgcttta tattcattaa tttatttaat cctcacaacc
      781 tatgaggttg gttcagcctg tgaaataaga accattgtta ttattttaca ggagaggaaa
      841 tttagataca caatggttac ataacttgac aatagtttac acagctagta agtagcagag
      901 ccaagacttg aacattctct actatactgt actggagaga tataaagata caatgtatgt
      961 gtacttcgtt tatacacaca catccttgca cagaaatact cacacttctg cacctaccaa
     1021 actatagtgc ttgcttttgc tagaacagat cctacagctt catggctctg agcctcatac
     1081 cttctgcagg agtagggttg ccagatttag caaataaaaa taaagcgtgc ccagttaaat
     1141 ttgaatttca ggtaaacaat aagtaatttt aaatatgccc caagtaatac ttgagacata
     1201 cttattttaa aaacattttt tgttgattgt ctgaaattca aatttaacta ggcatcctat
     1261 attttatctg gcatccttac ccaggagaaa aattcctatt agtttttcac gttctaaatc
     1321 aaatgactat tcctaggtaa agtcttcggc aatttttgtg ggcattttgt ttttctcttc
     1381 tgtactttta caacccaacc tacctctatc cgttagagtg tatgttattc tgcctgtagg
     1441 tgcctgactt ttcccattcc gacccttgct ttgtcggggg actgttttat gttcatctct
     1501 gaattcccaa ccatgaagat attgaatgat tgaaatggtt attgaataaa cagttactga
     1561 atgttattgg ctataaggaa tgaaggggaa ctagtatttg tgaattgtct tccatttgct
     1621 aaatatagtg ctgattgttt tgcaatattt aatgttcttt aaggctccat tataaattga
     1681 tggacatagt ctttggccgc caggagatca cattctcctg agacgtataa catttcacag
     1741 aaatagccga cgccgttcta agctccatct cctttctgag agagcaggat ctggctctcg
     1801 ttggtctaga actcctgttt ccatagcaac agaggtcctg taagagtcaa gggaggcagg
     1861 aagtgtggct tgcatttccg gtttgcgtcg gagcagccgg caacccggaa gttgacgctg
     1921 cgcggttgca catggccgcg ccctgggagg atgccgctgg tggtgttttg cgggctgccg
     1981 tacagcggca agagccggcg cgcggaggag ctccgcgtgg cactggcggc cgagggctgc
     2041 gcggtgtacg tggtggacga cgcggaggtg ctgggcgcgg aggacgcgac agtgtacggc
     2101 gattcggccc gtgagaaggc cttgcgtggg gccctgcgag cggccgtgga gcggcgcctg
     2161 agtcgccacg aagtggtcat cctcgactcg cttaattaca tcaagggctt ccgctacgag
     2221 ctgtactgcc tggcgcgggc ggcgcgcact ccgctctgcc tggtctactg cgtaaggcca
     2281 ggcggtctga gcgggggacc gcgggtggcc ggcgcggatg agagtgcgag ccgcaatgtc
     2341 agtgtgagtt ggaggccgcg agctgaggag ggagggagac ctctggcggc gggcaccggt
     2401 gtcctcgggg aaccgcaggc agtggagtct gtaataagtg ggagagccca ggcagaagta
     2461 cctaaggaac tggagcggga ggaaaccagg acgccagatt ttccagctct tgtgacttcg
     2521 gaattcgaga aatctgcaga gcatgtgtcc ggtgcctttt accctcccga acttctggag
     2581 gccctagcgc tgcgcttcga agctcccgac tctcggaacc gctgggaccg gcccctgttc
     2641 accttggtgg gcttagagga gccgttgcct ctgtcagaga tcagagctgc cttgtttgag
     2701 aaccgggctc ctccacccca tcagtctaca cagtcacagc cacttgcctc cggcaccttt
     2761 ctgcaccagt tggaccaggt caccagccag gtgttggcag gactgatgga agctcagaag
     2821 agcgcagtcc ctggagactt gcttaagctt tctggcacca cagagcatct gcggtttacc
     2881 cggcctttga ccatggcaga actgagtcgc ctccgtcgcc agtttatttc ctacaccaaa
     2941 atgcatccca ataatgagaa cctgcctcaa ctggccaaca tgtttctgca gtatctgagc
     3001 cagagcctgc actaaccaga gctggtgggg gaaagtcatg gctccttgtc taactactgc
     3061 actctctgtt tctctgggaa gaataatctg aaggtctgca gaatatattg atccgtggaa
     3121 atagagctat tgtgatcgat tcactcgtac gtttctgaat gcctctgtgc caggccttga
     3181 gtttacagca taaattgaga ctagaaagaa tggagaacta gcttggagga gcttggcaag
     3241 tttctctaga ggacagagct ctggtggaca gggtttactt agattgggtt ctacttgggg
     3301 tatcacatac cattgatttc ccccatctga attgtgggaa agcagactgg atggatgaat
     3361 tgttttaaaa taattgtgaa cagaactgaa gatgacacag ttttgcatct gtactggccc
     3421 ttttttcata ccacagtttt ttgagtactg tgcctacttt ttgctagtct ctgtcctggg
     3481 gcctgggatc acagatagat ccactggttt ctgtccttgg gaagttttgg ttctaatggt
     3541 gaaagacaaa accactagat tgtttcattt aataaaatct tttagatgaa gaca
//
LOCUS       XM_032653211            1354 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus thioredoxin domain containing 12
            (TXNDC12), transcript variant X1, mRNA.
ACCESSION   XM_032653211
VERSION     XM_032653211.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1354
                     /gene="TXNDC12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 94% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764524"
     CDS             74..631
                     /gene="TXNDC12"
                     /codon_start=1
                     /product="thioredoxin domain-containing protein 12 isoform
                     X1"
                     /protein_id="XP_032509102.1"
                     /db_xref="GeneID:116764524"
                     /translation="MELRPRLGATCLLGFSFLLLVTSSDGHNGLGKDEERKMGHRSHI
                     ASFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELAHNF
                     VMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVRPEIINENGNPSYKYFYISAEQV
                     VQGMKEAQERLTGDAFREKHLEDEL"
     misc_feature    218..568
                     /gene="TXNDC12"
                     /note="Endoplasmic reticulum protein 19 (ERp19) family;
                     ERp19 is also known as ERp18, a protein located in the ER
                     containing one redox active TRX domain. Denaturation
                     studies indicate that the reduced form is more stable than
                     the oxidized form, suggesting that...; Region: ERp19;
                     cd02959"
                     /db_xref="CDD:239257"
     misc_feature    order(308..310,317..319)
                     /gene="TXNDC12"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239257"
ORIGIN      
        1 aaaccgcgcg gactttctgc taggactcgg gccctacgtc tgctcagccc cgtggctccg
       61 cgcacctacc accatggagc tgcggcctcg tctcggagcc acctgtttgc tgggcttcag
      121 tttcctgctc ctcgtcacct cttctgatgg acataatggg cttggaaagg atgaagaacg
      181 taaaatggga cacaggagtc acatagctag ttttggagat cacattcatt ggaggacact
      241 agaagatggg aagaaagaag cagctgccag tggattaccc ctgatggtga ttatccataa
      301 gtcctggtgt ggagcttgca aagctttaaa gcccaagttt gcagaatcta cagaaatttc
      361 agaacttgcc cataattttg ttatggtaaa tcttgaggat gaagaagagc ccaaagatga
      421 agatttcagc cctgatgggg gttatattcc acgaatcctg ttcctggatc ccagtggcaa
      481 ggtccgtcct gaaatcatca atgagaatgg aaaccccagc tacaagtatt tctacatcag
      541 tgctgagcaa gttgttcagg ggatgaagga agctcaggaa aggctgacgg gtgatgcctt
      601 cagagagaaa catctcgaag atgagttgta acatgaatgt atccctcctt tcatcaaagt
      661 tactgttctg gaaggaaggc agtagggaag ggaatattga ggaatcactc agaacattta
      721 aaccttgttc ctgcctccat gggaaggggc cctctcactg tggaagagtt ctgctgccag
      781 aagctggtct ccgtgtttgt gatccagcag agtgtggcag acttccttct cctgtcccct
      841 ctcacctaaa tgtctctgtc attgaaggta aagaatgaca ccttttgaca caaaacttga
      901 gccatttgga gatttactcc tcacgctgca gtagttgaat ctttccattt cctcctgctt
      961 tactcacctt agtggtgaag agagaccaga agcatctgtt ttataatgtt aaaattgcag
     1021 aaatagctta tcatttaaaa caagtcctaa atgtaaatcc gtaattctac cccaccaagg
     1081 agaccagcct gtttcttctc tttctctcct gggaataatc tttggccttc ttcctgaatc
     1141 ccttcaactt ccttcctctt ctctggcttg gcttccctgt ttgcacgcat gcgtgtgcag
     1201 gaatggctgt gtgctttgga ctcagcccag ctggaagcat gctttcccct gttactgttg
     1261 gagaaactca aaccttcaag ccctagatgg agccattttt gtcaagtcgt caactgtatt
     1321 tttgtactgg ggttaaccaa aaaaaaaaaa aaaa
//
LOCUS       XM_032653215            1424 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus thioredoxin domain containing 12
            (TXNDC12), transcript variant X2, mRNA.
ACCESSION   XM_032653215
VERSION     XM_032653215.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1424
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1424
                     /gene="TXNDC12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 6 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764524"
     CDS             128..646
                     /gene="TXNDC12"
                     /codon_start=1
                     /product="thioredoxin domain-containing protein 12 isoform
                     X2"
                     /protein_id="XP_032509106.1"
                     /db_xref="GeneID:116764524"
                     /translation="MELRPRLGATCLLGFSFLLLVTSSDGHNGLGKGFGDHIHWRTLE
                     DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELAHNFVMVNLEDEEEPKD
                     EDFSPDGGYIPRILFLDPSGKVRPEIINENGNPSYKYFYISAEQVVQGMKEAQERLTG
                     DAFREKHLEDEL"
     misc_feature    233..583
                     /gene="TXNDC12"
                     /note="Endoplasmic reticulum protein 19 (ERp19) family;
                     ERp19 is also known as ERp18, a protein located in the ER
                     containing one redox active TRX domain. Denaturation
                     studies indicate that the reduced form is more stable than
                     the oxidized form, suggesting that...; Region: ERp19;
                     cd02959"
                     /db_xref="CDD:239257"
     misc_feature    order(323..325,332..334)
                     /gene="TXNDC12"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239257"
ORIGIN      
        1 aaaaaaaaaa aaaaaaatct gggaacagga gcggatgggc tgagtagcac ttggaaaccg
       61 cgcggacttt ctgctaggac tcgggcccta cgtctgctca gccccgtggc tccgcgcacc
      121 taccaccatg gagctgcggc ctcgtctcgg agccacctgt ttgctgggct tcagtttcct
      181 gctcctcgtc acctcttctg atggacataa tgggcttgga aagggttttg gagatcacat
      241 tcattggagg acactagaag atgggaagaa agaagcagct gccagtggat tacccctgat
      301 ggtgattatc cataagtcct ggtgtggagc ttgcaaagct ttaaagccca agtttgcaga
      361 atctacagaa atttcagaac ttgcccataa ttttgttatg gtaaatcttg aggatgaaga
      421 agagcccaaa gatgaagatt tcagccctga tgggggttat attccacgaa tcctgttcct
      481 ggatcccagt ggcaaggtcc gtcctgaaat catcaatgag aatggaaacc ccagctacaa
      541 gtatttctac atcagtgctg agcaagttgt tcaggggatg aaggaagctc aggaaaggct
      601 gacgggtgat gccttcagag agaaacatct cgaagatgag ttgtaacatg aatgtatccc
      661 tcctttcatc aaagttactg ttctggaagg aaggcagtag ggaagggaat attgaggaat
      721 cactcagaac atttaaacct tgttcctgcc tccatgggaa ggggccctct cactgtggaa
      781 gagttctgct gccagaagct ggtctccgtg tttgtgatcc agcagagtgt ggcagacttc
      841 cttctcctgt cccctctcac ctaaatgtct ctgtcattga aggtaaagaa tgacaccttt
      901 tgacacaaaa cttgagccat ttggagattt actcctcacg ctgcagtagt tgaatctttc
      961 catttcctcc tgctttactc accttagtgg tgaagagaga ccagaagcat ctgttttata
     1021 atgttaaaat tgcagaaata gcttatcatt taaaacaagt cctaaatgta aatccgtaat
     1081 tctaccccac caaggagacc agcctgtttc ttctctttct ctcctgggaa taatctttgg
     1141 ccttcttcct gaatcccttc aacttccttc ctcttctctg gcttggcttc cctgtttgca
     1201 cgcatgcgtg tgcaggaatg gctgtgtgct ttggactcag cccagctgga agcatgcttt
     1261 cccctgttac tgttggagaa actcaaacct tcaagcccta gatggagcca tttttgtcaa
     1321 gtcgtcaact gtatttttgt actggggtta accaaaaaaa aaaaaaaaat atatatatat
     1381 atattaattg ttccattaaa ctttaataaa actttaaaag gaaa
//
LOCUS       XM_032653224            1401 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus thioredoxin domain containing 12
            (TXNDC12), transcript variant X3, mRNA.
ACCESSION   XM_032653224
VERSION     XM_032653224.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1401
                     /gene="TXNDC12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764524"
     CDS             107..589
                     /gene="TXNDC12"
                     /codon_start=1
                     /product="thioredoxin domain-containing protein 12 isoform
                     X3"
                     /protein_id="XP_032509115.1"
                     /db_xref="GeneID:116764524"
                     /translation="MELRPRLGATCLLGFSFLLLVTSSDGHNGLGKGFGDHIHWRTLE
                     DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELAHNFVMVNLEDEEEPKD
                     EDFSPDGGYIPRILFLDPSGKVRPEIINENGNPSYKYFYISAEQVSSEYLQPVTGVQL
                     "
     misc_feature    212..547
                     /gene="TXNDC12"
                     /note="Endoplasmic reticulum protein 19 (ERp19) family;
                     ERp19 is also known as ERp18, a protein located in the ER
                     containing one redox active TRX domain. Denaturation
                     studies indicate that the reduced form is more stable than
                     the oxidized form, suggesting that...; Region: ERp19;
                     cd02959"
                     /db_xref="CDD:239257"
     misc_feature    order(302..304,311..313)
                     /gene="TXNDC12"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239257"
ORIGIN      
        1 ggaacaggag cggatgggct gagtagcact tggaaaccgc gcggactttc tgctaggact
       61 cgggccctac gtctgctcag ccccgtggct ccgcgcacct accaccatgg agctgcggcc
      121 tcgtctcgga gccacctgtt tgctgggctt cagtttcctg ctcctcgtca cctcttctga
      181 tggacataat gggcttggaa agggttttgg agatcacatt cattggagga cactagaaga
      241 tgggaagaaa gaagcagctg ccagtggatt acccctgatg gtgattatcc ataagtcctg
      301 gtgtggagct tgcaaagctt taaagcccaa gtttgcagaa tctacagaaa tttcagaact
      361 tgcccataat tttgttatgg taaatcttga ggatgaagaa gagcccaaag atgaagattt
      421 cagccctgat gggggttata ttccacgaat cctgttcctg gatcccagtg gcaaggtccg
      481 tcctgaaatc atcaatgaga atggaaaccc cagctacaag tatttctaca tcagtgctga
      541 gcaagtgtca agtgaatatc tacagcctgt gacaggggtt caactctaat cctggaggtt
      601 gttcagggga tgaaggaagc tcaggaaagg ctgacgggtg atgccttcag agagaaacat
      661 ctcgaagatg agttgtaaca tgaatgtatc cctcctttca tcaaagttac tgttctggaa
      721 ggaaggcagt agggaaggga atattgagga atcactcaga acatttaaac cttgttcctg
      781 cctccatggg aaggggccct ctcactgtgg aagagttctg ctgccagaag ctggtctccg
      841 tgtttgtgat ccagcagagt gtggcagact tccttctcct gtcccctctc acctaaatgt
      901 ctctgtcatt gaaggtaaag aatgacacct tttgacacaa aacttgagcc atttggagat
      961 ttactcctca cgctgcagta gttgaatctt tccatttcct cctgctttac tcaccttagt
     1021 ggtgaagaga gaccagaagc atctgtttta taatgttaaa attgcagaaa tagcttatca
     1081 tttaaaacaa gtcctaaatg taaatccgta attctacccc accaaggaga ccagcctgtt
     1141 tcttctcttt ctctcctggg aataatcttt ggccttcttc ctgaatccct tcaacttcct
     1201 tcctcttctc tggcttggct tccctgtttg cacgcatgcg tgtgcaggaa tggctgtgtg
     1261 ctttggactc agcccagctg gaagcatgct ttcccctgtt actgttggag aaactcaaac
     1321 cttcaagccc tagatggagc catttttgtc aagtcgtcaa ctgtattttt gtactggggt
     1381 taaccaaaaa aaaaaaaaaa a
//
LOCUS       XM_032653257             831 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAB42, member RAS oncogene family
            (RAB42), mRNA.
ACCESSION   XM_032653257
VERSION     XM_032653257.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..831
                     /gene="RAB42"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 Proteins, and 90%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764548"
     CDS             14..676
                     /gene="RAB42"
                     /codon_start=1
                     /product="ras-related protein Rab-42"
                     /protein_id="XP_032509148.1"
                     /db_xref="GeneID:116764548"
                     /translation="MEAGGCRYQFRIALLGDAAVGKTSLLRRYVAGAPGIPEPEPELE
                     SVPTVGVEFYSRTLQLRAGPRVKLQLWDTAGQERFRCITRSFYRNVVGVLLVFDVTNR
                     KSFEHIQYWHQEVMATQGPDKAIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFMET
                     SAKNNCNVDLAFNTLTDAIQQALQQGDIKLEEDWGGVRLIQNTQIPRHPSSTQHPGPC
                     KC"
     misc_feature    35..607
                     /gene="RAB42"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; Region: P-loop
                     containing Nucleoside Triphosphate Hydrolases; cl38936"
                     /db_xref="CDD:476819"
     misc_feature    59..82
                     /gene="RAB42"
                     /note="G1 box; other site"
                     /db_xref="CDD:133311"
     misc_feature    order(65..85,236..238,404..409,413..415,494..502)
                     /gene="RAB42"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133311"
     misc_feature    155..157
                     /gene="RAB42"
                     /note="G2 box; other site"
                     /db_xref="CDD:133311"
     misc_feature    167..175
                     /gene="RAB42"
                     /note="Switch I region; other site"
                     /db_xref="CDD:133311"
     misc_feature    227..238
                     /gene="RAB42"
                     /note="G3 box; other site"
                     /db_xref="CDD:133311"
     misc_feature    order(233..238,284..289)
                     /gene="RAB42"
                     /note="Switch II region; other site"
                     /db_xref="CDD:133311"
     misc_feature    404..415
                     /gene="RAB42"
                     /note="G4 box; other site"
                     /db_xref="CDD:133311"
     misc_feature    494..502
                     /gene="RAB42"
                     /note="G5 box; other site"
                     /db_xref="CDD:133311"
ORIGIN      
        1 ccagacgtcc gacatggagg cggggggctg ccgctaccag tttcggatcg cgctgctggg
       61 ggacgcggcc gtgggcaaga cgtcgctgct gcggcgctac gtggcgggcg cgcctgggat
      121 cccggaaccc gagccggagc tcgagtcggt gcccacggtg ggcgtcgagt tctacagccg
      181 cactctgcag ctgcgggccg ggccgcgcgt gaagctgcag ctctgggaca cggcgggcca
      241 agagcgcttc aggtgcatca ccaggtcctt ttaccggaat gtggtgggtg tcctgctggt
      301 ctttgatgtg acaaacagga agtcctttga acacatccaa tactggcacc aggaggtcat
      361 ggccactcag ggccccgaca aggcgatctt cctgctggtt ggccacaaga gtgacctgca
      421 gagcacccgt tgtgtctcag cccaggaggc agaggagctg gctgcttccc tgggcatggc
      481 cttcatggag acctccgcca aaaataactg caacgtggac ctggccttca acaccctcac
      541 tgatgccatc cagcaggccc tgcagcaggg ggacatcaaa ctggaggagg actggggggg
      601 tgtccggctc atccagaaca cccaaatccc caggcacccc agcagcacac agcacccggg
      661 cccatgcaag tgttgactct gggagggaaa gggttaaagc agtgtggacc tcataagtgc
      721 tggtgagatg gggagtgtta gtatctctct ggagggcata tggcagaatc tatcctgagg
      781 gttaatataa acagtatcct ggtacagtct tgtctcctgg atttgggggt c
//
LOCUS       XM_032653266            3231 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gap junction protein alpha 5 (GJA5),
            mRNA.
ACCESSION   XM_032653266
VERSION     XM_032653266.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3231
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3231
                     /gene="GJA5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764554"
     CDS             126..1202
                     /gene="GJA5"
                     /codon_start=1
                     /product="gap junction alpha-5 protein"
                     /protein_id="XP_032509157.1"
                     /db_xref="GeneID:116764554"
                     /translation="MGDWSFLGEFLEEAHKHSTVIGKVWLTVLFIFRMLVLGTAAESS
                     WGDEQADFQCDTIQPGCENVCYDQAFPISHIRYWVLQVIFVSTPSLVYLGHAVHTVRM
                     QEKRKLREGERVKEVRGAASYEYPVAEKTELSCWEEANGKIPLRGSLLNTYVCSILIR
                     TTVEVAFIVGQYLLYGIFLDTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAGLS
                     LFLSLAELYHLGWKKIRQRFVKSQQRMDECQLPGPSARIVKSCTPPPDFSQCLENGPG
                     GKFLNPFSNKMASQQNTDNLATEQVRGQEQIPGEGFIHIRYAQKPEVPNEGSPGHRLP
                     HGYQGDKRRLSKASSKARSDDLSV"
     misc_feature    132..818
                     /gene="GJA5"
                     /note="Region: Connexin; pfam00029"
                     /db_xref="CDD:459638"
     misc_feature    897..1199
                     /gene="GJA5"
                     /note="Connexin 40 C-terminal domain; Region:
                     Connexin40_C; pfam16791"
                     /db_xref="CDD:465272"
ORIGIN      
        1 aggctggaga gcaaggaaga gtgggcagcg ggggagaggc ggccagagaa ccaagaagcc
       61 aactggaatt ccagacagga ggaaaagagg aaggagtctt ggcatctgtc ttctgctgag
      121 ccaagatggg tgactggagc ttcctgggag agttcctgga ggaagcacac aagcattcca
      181 cggtgatcgg taaggtctgg ctcaccgtcc tcttcatatt ccgcatgctg gtgctgggca
      241 cggctgccga gtcctcctgg ggggacgagc aggctgattt ccagtgtgat acgattcagc
      301 ctggttgcga gaacgtctgc tatgaccaag ccttccccat ctcgcacatt cgctattggg
      361 tgctgcaggt catcttcgtc tccacaccct ctctagtgta cttgggccac gccgtgcaca
      421 cggtgcgcat gcaggagaag cggaagctac gggagggcga gagggtcaaa gaggttcggg
      481 gcgctgcctc ttacgagtac ccagtggccg agaagacaga gctgtcctgc tgggaagaag
      541 cgaatggaaa gattccgctc cggggcagtc tgctcaacac ttacgtctgc agtatcctga
      601 tccgcaccac cgtggaggtg gccttcatcg tgggccagta cctcctctat ggcatcttcc
      661 tggacaccct gcacgtctgc cgcaggagtc cctgtcccca tcctgtcaac tgttatgtgt
      721 cccggcccac ggagaagaat gtcttcattg tctttatgct ggctgtggcc ggactgtccc
      781 ttttcctcag ccttgctgaa ctctaccacc tgggctggaa aaagatcaga cagcgatttg
      841 tcaagtcaca gcagcgcatg gatgagtgcc agcttcctgg tccctctgcc cgcatagtca
      901 agagctgcac accaccccct gacttcagtc agtgcctgga gaatggccct ggggggaaat
      961 tcctcaatcc attcagtaac aagatggcct cgcagcagaa cacagataac ctggccactg
     1021 agcaagtgcg aggccaggag cagattcctg gagagggttt cattcatatc cgttatgccc
     1081 agaagcctga ggtacccaat gaaggctccc caggtcaccg cctcccccat ggctaccagg
     1141 gtgacaagcg ccgtctcagc aaggccagca gcaaggccag gtcagatgac ctatcagtgt
     1201 gacccaccgg tgtggcggaa ccaggaccgg gtgggaacaa aggaggctca gagagggaag
     1261 gtgtgtccct tctgacccca tctctctcat tctcatcact gctctactca gtttgggccc
     1321 tggatctcaa tggcattgct cattttttcc agaagctatg accaggtctt tgtgggtgca
     1381 gtaagagaca tggctaccta cccaggctcc ttcaccctcc actcagaatc ctcagtgaag
     1441 cctttcatat tactcagtga atgggataga ggaagggacg gggaccatga caaatctgac
     1501 ctgggcggga cagccagggg gataggatga ctctctacat accagccaca caccagatgg
     1561 atcctctaag cccctctggc gtcgttgacc cgatcaccct tcctcctgca aggaagagcc
     1621 caaagttccc ggccagcaat gagcatgaat caaggaactt gcattatatg tgctcttgaa
     1681 tctgttgtct ccttggacca taccttgggg tggtggtcag gtcgccatgg gatgcccttg
     1741 gctgcccctc cctctacccg gtcttactta aaaagaggcc cttagaactt gaccagcagc
     1801 ctcaacttta caagtgcctt ggtatgtacc tctggcaaat gtctcacctt ggtgatgttg
     1861 cagcctttcc ttctgccagg gtgtacaacg agcccgggga gggggtttga aaagctctcc
     1921 tagggagtca ctgtgcacac tgactccact ggcattcctg ccaccacata tcaacctgca
     1981 gctcttttac agttcaacct gatggtagaa accatccctt ccagtcctcc cttggctgtc
     2041 catccagtgc tcccctaaaa accttattga ccagaatgcc caagaagcca tcatcctctc
     2101 tcacattctg accagatcac cagccatgga ggccagtgga atttccccag gtcttattaa
     2161 aacaaagagg gcattgtgct tctcagattc cccttgggaa aaaaaataat tctgctgtga
     2221 agataaaaat gaaaaaggag agaaaatact ggaaaactat ttttccctcc tgtttgcttc
     2281 ccttgctgac tgccaactta gagtgccaag aggaggtgtg atgacaacta tggaggcccc
     2341 catatctctc tttccctgga ggatttagca ggggcatgaa agcagaaagg gaatctccag
     2401 ctctcttggc aggacccttg tttaagagca cagagatgcc tgtgtctccc cagtgatcct
     2461 aaagagactg ccaaaaaagc agtggggact acagaaaagc cctgccttcc cagggactgg
     2521 ccaggtttct ctcttcagtc catctgtaat aggtggttgc cattttggat gaaggtaaag
     2581 gatgctcaga agtggctgcc gaaacttata gggagacagt tacttttaaa gatgcatgtg
     2641 tgtgtttgtg tgtgtatgta tatgttgata agctgggtga aagggaggga agtcctgaag
     2701 taaggaaagc atgccttaga gacacttgtg tcttcctgcc ctttcctcca gatgcctggc
     2761 agaggggctg agcctcactg ttttcagtgt ctttaacctg aatagataag catgagaggt
     2821 tgggacagag gaggctgaag cctcagaagg aggcttcagc ctctgcccca cctgcccatc
     2881 tctgggcccc tctgctgata cttggttgtt attggtgggt agagagaagg atgagggtag
     2941 aggggtggag gaaactgact gggatgccat ttagggaaga atgactggtc atcccagatt
     3001 cctggagggg acacctttta atctattctc tggcactggc attaagactc tttctccaaa
     3061 acaaagcaaa aaagactctc tttccttcca tctctgaagt gtgtttgttt tgtgaaacga
     3121 gtgttcttgg attagaaatt ctgtgagatc agtcctgatg atggggcttt caggaaggaa
     3181 aaaggaaata atatgtgtcg tttgtcctaa taaagtctgg ccctacattt a
//
LOCUS       XR_004352934            1300 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764562
            (LOC116764562), transcript variant X1, ncRNA.
ACCESSION   XR_004352934
VERSION     XR_004352934.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1300
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1300
                     /gene="LOC116764562"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764562"
     ncRNA           1..1300
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764562"
                     /product="uncharacterized LOC116764562, transcript variant
                     X1"
                     /db_xref="GeneID:116764562"
ORIGIN      
        1 agcccctcag gccggcaggt tggaagtctc caggagctgg cggtcagcgt gtgtaggagt
       61 gagtccgcga gtttgccaag ctgattggca gaaaaaacaa gtgtgcaccc tccaagctgc
      121 actattacaa ctgggagatg agcctcaacc agaagtccct gaagaaattc tacaaaagat
      181 tcaaaggccc atccaaaaag taataaaaaa ttgcctgatc tgcatcagaa acaatcctaa
      241 aaccaggcca cgcccgataa tgaaaggggt gcaaacctga gggacaaaag caggagatga
      301 ttggttgttg attaatcaaa gctggagtta ttttacggag atagcactgt gcatgtgcaa
      361 gacaggaacc tgtgtctcca ggatgacctt ggaaccaaga gtctacagaa ctcaaagaat
      421 agaaatcttg ccaccagagc cctttacaaa gtgagaagtc cttcaataag gaaaagctga
      481 cttccagcag catgagtagc tcatatggac taattcaaga ctaaccaatc aatcaccatc
      541 caggtttgaa attccactaa ccccttaaat ttcaccccag actctggctt gaggagacag
      601 gtttgaaaac cttgcctcct gtctctttgt cagtcgacct cgtgataaag ctctttcttt
      661 tctcaaaaat cagtgccata gtactggctt ctatgcacat caggcagcga gcccttgctc
      721 agtaatgtag ggaacaccac catttaaggg aagggcagag aaagagaggc ctgagaagga
      781 gaatgataag gagtggcaga gatagaaaag acttaggtat caaggaagcc aagagaagaa
      841 aggttcgaag aagaagggag tggacagcag tgtcaaatgg aactgagaag tcaagtgatg
      901 gacggaccaa gtgtctcctg gatttgacaa aatattcttt ggtcactaaa gtgagagcgg
      961 tttcaatgaa atagtggggt gaaaattaaa tagaagtggg tagtgagtgg gaagtaagtg
     1021 tagacatctt caagaagttt agctgagaag aggaggtgaa caaatacagt atcgggaggt
     1081 gtttgattca ggaagttaag ggagaactgt cttttgaaga tgggataagt ttctatgtat
     1141 gtttaaatgt tgatagaaag aaggctatag ataggaagag gctgaaaata caagagacag
     1201 gataatcgag tgaagtgctt aagagggtag gaaatgatga gaaataaatg taaaagtcat
     1261 tagcctcaga aggagaaggt acgtattgtc aatgttgaca
//
LOCUS       XR_004352935            1175 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764562
            (LOC116764562), transcript variant X2, ncRNA.
ACCESSION   XR_004352935
VERSION     XR_004352935.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1175
                     /gene="LOC116764562"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116764562"
     ncRNA           1..1175
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764562"
                     /product="uncharacterized LOC116764562, transcript variant
                     X2"
                     /db_xref="GeneID:116764562"
ORIGIN      
        1 agcccctcag gccggcaggt tggaagtctc caggagctgg cggtcagcgt gtgtaggagt
       61 gagtccgcga gtttgccaag ctgattggca gaaaaaacaa gtgtgcaccc tccaagctgc
      121 actattacaa ctgggagatg agcctcaacc agaagtccct gaagaaattc tacaaaaggt
      181 tgttgattaa tcaaagctgg agttatttta cggagatagc actgtgcatg tgcaagacag
      241 gaacctgtgt ctccaggatg accttggaac caagagtcta cagaactcaa agaatagaaa
      301 tcttgccacc agagcccttt acaaagtgag aagtccttca ataaggaaaa gctgacttcc
      361 agcagcatga gtagctcata tggactaatt caagactaac caatcaatca ccatccaggt
      421 ttgaaattcc actaacccct taaatttcac cccagactct ggcttgagga gacaggtttg
      481 aaaaccttgc ctcctgtctc tttgtcagtc gacctcgtga taaagctctt tcttttctca
      541 aaaatcagtg ccatagtact ggcttctatg cacatcaggc agcgagccct tgctcagtaa
      601 tgtagggaac accaccattt aagggaaggg cagagaaaga gaggcctgag aaggagaatg
      661 ataaggagtg gcagagatag aaaagactta ggtatcaagg aagccaagag aagaaaggtt
      721 cgaagaagaa gggagtggac agcagtgtca aatggaactg agaagtcaag tgatggacgg
      781 accaagtgtc tcctggattt gacaaaatat tctttggtca ctaaagtgag agcggtttca
      841 atgaaatagt ggggtgaaaa ttaaatagaa gtgggtagtg agtgggaagt aagtgtagac
      901 atcttcaaga agtttagctg agaagaggag gtgaacaaat acagtatcgg gaggtgtttg
      961 attcaggaag ttaagggaga actgtctttt gaagatggga taagtttcta tgtatgttta
     1021 aatgttgata gaaagaaggc tatagatagg aagaggctga aaatacaaga gacaggataa
     1081 tcgagtgaag tgcttaagag ggtaggaaat gatgagaaat aaatgtaaaa gtcattagcc
     1141 tcagaaggag aaggtacgta ttgtcaatgt tgaca
//
LOCUS       XR_004352936             354 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764567
            (LOC116764567), ncRNA.
ACCESSION   XR_004352936
VERSION     XR_004352936.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..354
                     /gene="LOC116764567"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764567"
     ncRNA           1..354
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764567"
                     /product="uncharacterized LOC116764567"
                     /db_xref="GeneID:116764567"
ORIGIN      
        1 aggctcccca actccggacc agaatgctag gaaccaccgc tagatgtcca aagcagggga
       61 caaccaaggc caatgatttg ccatcacgag tgagtggaga aatgggccaa gccacaatgc
      121 agaaggtgtt caccagaaga agaaaacgtg ggctgagtgg ctccttggta cctgccttgt
      181 tctcgtcatg gagacttgtc tgtgaagtgc agtggtctca gcatctcctg aagagtgagg
      241 aattctccag atcacgggaa gacagaactg taggctcact gccttttgcc ccttttcggc
      301 ctggagaatc acgtccgagg ttagagatga ggttgcatca gacactctca gccc
//
LOCUS       XM_032653299            3111 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein subunit beta 1 (GNB1),
            transcript variant X1, mRNA.
ACCESSION   XM_032653299
VERSION     XM_032653299.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3111
                     /gene="GNB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 30 long SRA reads, 54 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116764574"
     CDS             363..1385
                     /gene="GNB1"
                     /codon_start=1
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-1"
                     /protein_id="XP_032509190.1"
                     /db_xref="GeneID:116764574"
                     /translation="MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNVDPVGRIQ
                     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT
                     CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS
                     SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC
                     RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELVTYSHDNIICGITSV
                     SFSRSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS
                     FLKIWN"
     misc_feature    504..1382
                     /gene="GNB1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    order(522..524,576..578,588..590,606..611,630..635,
                     702..704,714..716,732..737,783..788,837..839,849..851,
                     867..872,909..911,960..962,975..977,993..998,1032..1037,
                     1089..1091,1101..1103,1119..1124,1155..1160,1218..1220,
                     1233..1235,1251..1256,1290..1295,1347..1349,1359..1361,
                     1377..1382)
                     /gene="GNB1"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    534..647
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    663..785
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    798..905
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    924..1031
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1047..1157
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1179..1289
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1305..1379
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 cgaggctgcg ggcaggggcc gccgcgccca tcccgatggc tggaggcgtc tgaggggcgg
       61 acggaggcgg cggcggcggc ggcggcggcg ggagcgggcg cgggcgcggg agtggagcag
      121 ccgccgcggg accgacagac tgagcctcgc cggcgcacct gcccgcagcg cccgcggagc
      181 ggcccgagcg cgaccatctc ccggagcggc ggccgaggcg gctgaggcgg cggggagcgg
      241 gcgcggcagg cgggacgcgg tgtcgagaca attttacatg ttttggagac cagaccagaa
      301 gcacttctga attaagatct aagattcttt gaggtggctt tgaagagcac taagattaga
      361 agatgagtga acttgaccag ttacggcagg aggccgaaca gcttaaaaac cagattagag
      421 atgctagaaa agcgtgtgcc gatgcaactc tctcccagat cacaaacaac gtcgacccag
      481 tgggaagaat ccagatgcgt accaggagaa cgctgagggg gcacttggcc aaaatctacg
      541 ccatgcactg gggcacagat tccaggcttc tagttagtgc ctcacaggat ggtaagctta
      601 tcatctggga tagctacacc acgaacaagg ttcatgccat ccctctgcgt tcctcgtggg
      661 tcatgacatg tgcatatgcc ccttctggca actatgtggc ctgcggtggc ctggataaca
      721 tttgctccat ttacaatctg aaaactcgtg aagggaatgt acgtgtgagt cgtgaactgg
      781 ctggacatac aggttacctg tcctgctgcc gttttctgga tgacaatcag attgttacca
      841 gctctggaga caccacctgt gccctgtggg acattgagac cggccagcag acgaccacgt
      901 tcacgggaca cactggcgat gtcatgagcc tctcgctcgc tccggacacc agactgtttg
      961 tctctggtgc ttgtgatgct tcagccaaac tctgggacgt gcgagaaggg atgtgccggc
     1021 agaccttcac cggccacgag tccgacatca acgccatctg tttctttcca aacggcaacg
     1081 catttgccac tggctcggac gacgctacct gcaggctgtt cgacctccgc gcggatcagg
     1141 agctcgtgac ttactcccac gacaacatca tctgcgggat cacgtccgtg tccttctcca
     1201 ggagcgggcg cctcctgctc gcgggctacg acgacttcaa ctgcaacgtc tgggacgccc
     1261 tcaaggccga cagggcaggg gtcttggccg ggcatgacaa ccgcgtcagc tgcctggggg
     1321 tgactgacga cgggatggcc gtggcaacag ggtcctggga cagcttcctc aagatctgga
     1381 actaacacca acagcaggtg gacgccgctg tgactggaag accattccaa ccttggagcg
     1441 ttacagtgat agcatttcca atccacccct actaacgcgg atgccctgca cccctcagaa
     1501 cttcaaaagg gcaagacctt ttcccttcac ttattgctga aaccaagagc acaattccca
     1561 ttaagagaag aatctctgtg ctgtaaacta aaacaaatcg tgcattcctt ccgggaccat
     1621 tgtctttgtt tttctttttt tgtttgtttt tctttttttt ttgtcttgaa tgaatttcaa
     1681 aggaaatact ataataaaaa tgttaaccag aaggtaaact tgagtgtaat tgtaaggcag
     1741 acacactttt ctactagttt ctttgaattc tagatcagtg atcctgtttt gtgatgttca
     1801 tggcgaacaa gttgaggact tcatcttgta attgattcta agtttcagat tgtgtttgta
     1861 acaggatttt gcagacattc atatttcctt cttaaaatat attcctttct gttcagtagt
     1921 taaacagaga aagagggtct agtgcagcct ctctggaatt gttaatgatg tacatttagt
     1981 ccctagttgt tttactttcc gtctcgtgtc acatgatggc tgtgtgcaca cacggcatag
     2041 aagggtgatg ctgagaagcc aaggaacaga gctcgcgccg tggacgaaca gtgaacacca
     2101 gttaggcacc tttgctcccc aacccgccct ctctaccttc tcagttcagt ttttaatctc
     2161 accctgggtc tccttgtgaa gttggaggga agtttataca acagcaacag cgcgacacga
     2221 ccgtgtgccc caccctgacc gtcaggagcc tctgctctca agcgaggtgc ccgtcctgtg
     2281 cttggatagt cagtcagtta tttgtgtatg aaacaatgta caaatcaatg ttttgaaaat
     2341 aatgatctca aactttctaa gttaaatttt aaaaaatttg atcgtttgcc atatcgggtg
     2401 ggtttactct tagaatcgca tgctgtagaa atgctcaaaa gtgcatatag gactcagtcc
     2461 ttagatgttc tctttctttt cagaaataac ctctttaaag ctgtagccat tgctcctctc
     2521 tgcacacgca tcgcatcgga agccgtgcag ccagcggctc tacacactca cctagcggga
     2581 cattcactgt tttctttatt cctttaaaaa caagtcctgt tccaaacgat tgctgttgga
     2641 attggggggt ggggcggggt gacagggaat ggagaccccg gcctcccttt gtggattcct
     2701 cacagcccgg ctctcccgtg gaaccagcct tttgcaccga ggcagaccat ttttctaaca
     2761 tgcagacgtc cctggttttg tgcgcgtcca gtgtggagca gtggcgttgg gacggcacag
     2821 gcctcctccc cgcaccaagc actcccgtag aggcagcagc ggcttctcca tcctgtgttt
     2881 gcaccatcct gtgtgccctg tgccctggac ccgcaaagag tgggacaagc accaccaccc
     2941 ccaccccagc cctacccccc tcagcacccc tgtagagctc tctgcaccct gtccctcacc
     3001 ttttgtattt aattttaaag tcagtgtact gcaaggaagc tggatgcaag atagatccta
     3061 tattcactgt actgttattt aagatgtaat aaagcagttt gacatgaggg a
//
LOCUS       XM_032653304            6423 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein subunit beta 1 (GNB1),
            transcript variant X2, mRNA.
ACCESSION   XM_032653304
VERSION     XM_032653304.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6423
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6423
                     /gene="GNB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 long SRA reads, 54 Proteins,
                     and 55% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:116764574"
     CDS             3675..4697
                     /gene="GNB1"
                     /codon_start=1
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-1"
                     /protein_id="XP_032509195.1"
                     /db_xref="GeneID:116764574"
                     /translation="MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNVDPVGRIQ
                     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT
                     CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS
                     SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC
                     RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELVTYSHDNIICGITSV
                     SFSRSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS
                     FLKIWN"
     misc_feature    3816..4694
                     /gene="GNB1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    order(3834..3836,3888..3890,3900..3902,3918..3923,
                     3942..3947,4014..4016,4026..4028,4044..4049,4095..4100,
                     4149..4151,4161..4163,4179..4184,4221..4223,4272..4274,
                     4287..4289,4305..4310,4344..4349,4401..4403,4413..4415,
                     4431..4436,4467..4472,4530..4532,4545..4547,4563..4568,
                     4602..4607,4659..4661,4671..4673,4689..4694)
                     /gene="GNB1"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    3846..3959
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    3975..4097
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    4110..4217
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    4236..4343
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    4359..4469
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    4491..4601
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    4617..4691
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 atattcatca gtgatattgg tctgtaattt tctttttttg tagtgtcttt gtctggtttt
       61 ggtatcaggg tgatggtggc ctcgtagaat gagtttggga gtgttccttc ctctgcaatt
      121 ttttggaaga gtttgagaag gatgagtgtt cgctttcctc taaatgtttg atagaattca
      181 tctgtgaagc catctgatcc tggacttttg tttgttggaa gatttttaat cacagtttca
      241 attccattac ttgtgatggg tctgttcata ttttctgttt cttcctggtc cagtcttgga
      301 aggttatacc tttctaagag tttgtccatt tcttccaggt tgtccatttt attggcatag
      361 agttgcttgt agtagtctct taggatgctt tgtatttctg cggtgtctgt tgtaacttct
      421 cctttttcat ttctaatttc attggtttga gtcctctccc tctttttctt gatgagtctg
      481 gctaatggtt tgtcaatttt gtttatcttc tcaaagaacc aacttttagg tttattgatc
      541 tttgctatcg ttttctttgt ttctgtttca tttatttctg ctctgatctt tatgatttct
      601 ttccttctgc taactttggg ttttgtttgt tctttctcta gttcctttag gtgtaaactt
      661 agatggttta tttgagatgt ttcttatttc ttgaggtagg cttgtatagc tataaacttc
      721 cctcttagaa ctgcttttgc tgcattcagt aggtttcggg tcgtcatgtt ttcattgtca
      781 tttgtctcta ggtatttttt gatttcctct tcgatttctt cagtgatctc ttggttattt
      841 agtaacgtat tgtttagcct ccttttttac gtttttttcc cctgtaattc atttctaatc
      901 tcatagcgtt gtggtcagaa aagatgcttg atatgatttc agttttctta aatttactga
      961 gacttgattt gtgacccaag atgtgatcta tcctggagaa gaatgttccg tgcacacttg
     1021 agaagaaagt gtaatctgct gtttttggat gcgatgtcct ataaatatca attaaatctg
     1081 tttggtctgt tgtgtcattt aaagcttctg tttccttatt tattttcatt ttggatgatc
     1141 tgtccattgg tgtaagtgag gtgttaaagt cccccactgt tattgtgtta ctgttgattt
     1201 tctctttcat agctgttagc agttacctta tgtattgagg tgctcctatg ttgggtgcat
     1261 atatatttat aattgttata tcttcctgga ttgatctctt gatcattata tagtgtcctt
     1321 ccttgtctct tgtaacattc tttattttaa agtctatttt atctgatatg agtactgcta
     1381 ctccagcttt cttttgattt ccatttgcat ggaatatctt tttccatccc ctcacttttc
     1441 agtctgtacg tgtccctagt tctgaagtgg ttctcttgta gacagcatat atttgggtct
     1501 tgtttttgta tccattcagg aagcctgtgt cttttggttg gagcatttaa cccattcacg
     1561 tttaaggtaa ttatcaatat gtatgttcct attaccattt tcttaatttt gtggggtttg
     1621 tttttgtagg tccttttctt ctcttgtgtt tcccacttag agacgttcct ttagcatttg
     1681 tagtagagct ggtttggtgg tgctgaattc tcttagcttt tgatttttcc atcgaatctg
     1741 aatgagatcc ttgctgggta gagttatctt ggttatagtt tcttcccttt cataacttta
     1801 agtatatcat gccactccct tctggcttgt agaatttctg ctgagaaatc agctgttaac
     1861 cttatggggg ttcccttgta tgttatttgt cgtttttccc ttgctgcttt caataatttt
     1921 tgtttgtctt taatttttgc caacttgatt actttgtgtc tcggtgtgtt tctccttggg
     1981 tttgtcctgt atgggacttg ctgcgcttcc tgaacttggg tggctgtttc ctttcccatg
     2041 ttagggaagt ttcgactata atctcttcaa atattttctc tcatcctttc tctctctctt
     2101 ctccttctgg gacccctata atgcgaatgt tgttgcgttt aatgttgtcc cagaggtctc
     2161 ttaggctgtc ttcatttctt ttcattcttt tttctttgtt ctgttccgca gcagtgaatt
     2221 ccaccattct gtcttccagg tcacttatcc attctgcctc atttattctg ctattgattc
     2281 cttctagtgt agttttcgtt tcagttattg cattgttcct ctctgtttgt ttgttcttta
     2341 attcttctag gtctttgtta aacatttctt gcatcttctc gatctttgcc tccattcttt
     2401 ttctgaggtc ctggatcatc ttcactatca ttattctgaa ttctttttct ggaaggttgc
     2461 ctatctccat ttcatttagt tgtttttctg gggttttatc ttgttccttc atctggtaca
     2521 tagccctctg ccttttcatc ttgtctatct ttctgtgaat gtggtttttg ttccacaggc
     2581 tgcaggactg tagttctttt tgcttctgct gtctgccctc tggtggatga ggctatctaa
     2641 gaggcttgtg caagcttcct gatgggaggg actgctggtg ggtatagcta ggtgttgctc
     2701 tgctgggcag agctcagtaa aactttaatc cgattgactg ctgatgggtg gggctgggtt
     2761 ccctccctgt tggttgtttg gcctgaggca gtgcagtact ggagcctacc tgggctcttt
     2821 ggtggggcta ataacagact ctgggagggc tcacgccaag gagtacttcc cagaacttct
     2881 gctgccagtg tccttgtccc caaggtgagc cacagccact ccccgcctct gcaggagacc
     2941 ctccaacatt agcaggagtc accaaaatgg gacatagaga cacaaagcga gtaaatgctg
     3001 ttggaaaaac ggcgctgatg gacttgctca acatggggcc gtcacaactc ttcagtttgt
     3061 agaaaacgcg gtatctctga agtgcagtaa aacaaagtat gcctgtaaat attcctaaat
     3121 atttggccca aactggtgta tggcacaaga acaggttcac gaaatgcttt tctaacagag
     3181 accacataat aaacacagac gtcagttgag cttcacagta aagagcactg ccggattctg
     3241 aatggtctga aggcccagag tgtctgtgat tcttgcttct ttccagttcc catcataaat
     3301 cacagacgct ttagaatatg agtgacagaa acacttcaat tcagagcgcc ttctgttttg
     3361 cagttttcac aggaaataca atgctcacgt cttcagctgc agcacccctc gtggctggac
     3421 ttcagagtaa ccatggagcg tcctccctgc cagcctgctg cctgagaacc atcttttctc
     3481 ctgactgtct ggccatgcgc cgccccctcc cctgtgggcc ctggaaaccc gtcggccagg
     3541 ctcatcagtc tagtgtgctc agcccttagg ggtctaaaga caattttaca tgttttggag
     3601 accagaccag aagcacttct gaattaagat ctaagattct ttgaggtggc tttgaagagc
     3661 actaagatta gaagatgagt gaacttgacc agttacggca ggaggccgaa cagcttaaaa
     3721 accagattag agatgctaga aaagcgtgtg ccgatgcaac tctctcccag atcacaaaca
     3781 acgtcgaccc agtgggaaga atccagatgc gtaccaggag aacgctgagg gggcacttgg
     3841 ccaaaatcta cgccatgcac tggggcacag attccaggct tctagttagt gcctcacagg
     3901 atggtaagct tatcatctgg gatagctaca ccacgaacaa ggttcatgcc atccctctgc
     3961 gttcctcgtg ggtcatgaca tgtgcatatg ccccttctgg caactatgtg gcctgcggtg
     4021 gcctggataa catttgctcc atttacaatc tgaaaactcg tgaagggaat gtacgtgtga
     4081 gtcgtgaact ggctggacat acaggttacc tgtcctgctg ccgttttctg gatgacaatc
     4141 agattgttac cagctctgga gacaccacct gtgccctgtg ggacattgag accggccagc
     4201 agacgaccac gttcacggga cacactggcg atgtcatgag cctctcgctc gctccggaca
     4261 ccagactgtt tgtctctggt gcttgtgatg cttcagccaa actctgggac gtgcgagaag
     4321 ggatgtgccg gcagaccttc accggccacg agtccgacat caacgccatc tgtttctttc
     4381 caaacggcaa cgcatttgcc actggctcgg acgacgctac ctgcaggctg ttcgacctcc
     4441 gcgcggatca ggagctcgtg acttactccc acgacaacat catctgcggg atcacgtccg
     4501 tgtccttctc caggagcggg cgcctcctgc tcgcgggcta cgacgacttc aactgcaacg
     4561 tctgggacgc cctcaaggcc gacagggcag gggtcttggc cgggcatgac aaccgcgtca
     4621 gctgcctggg ggtgactgac gacgggatgg ccgtggcaac agggtcctgg gacagcttcc
     4681 tcaagatctg gaactaacac caacagcagg tggacgccgc tgtgactgga agaccattcc
     4741 aaccttggag cgttacagtg atagcatttc caatccaccc ctactaacgc ggatgccctg
     4801 cacccctcag aacttcaaaa gggcaagacc ttttcccttc acttattgct gaaaccaaga
     4861 gcacaattcc cattaagaga agaatctctg tgctgtaaac taaaacaaat cgtgcattcc
     4921 ttccgggacc attgtctttg tttttctttt tttgtttgtt tttctttttt ttttgtcttg
     4981 aatgaatttc aaaggaaata ctataataaa aatgttaacc agaaggtaaa cttgagtgta
     5041 attgtaaggc agacacactt ttctactagt ttctttgaat tctagatcag tgatcctgtt
     5101 ttgtgatgtt catggcgaac aagttgagga cttcatcttg taattgattc taagtttcag
     5161 attgtgtttg taacaggatt ttgcagacat tcatatttcc ttcttaaaat atattccttt
     5221 ctgttcagta gttaaacaga gaaagagggt ctagtgcagc ctctctggaa ttgttaatga
     5281 tgtacattta gtccctagtt gttttacttt ccgtctcgtg tcacatgatg gctgtgtgca
     5341 cacacggcat agaagggtga tgctgagaag ccaaggaaca gagctcgcgc cgtggacgaa
     5401 cagtgaacac cagttaggca cctttgctcc ccaacccgcc ctctctacct tctcagttca
     5461 gtttttaatc tcaccctggg tctccttgtg aagttggagg gaagtttata caacagcaac
     5521 agcgcgacac gaccgtgtgc cccaccctga ccgtcaggag cctctgctct caagcgaggt
     5581 gcccgtcctg tgcttggata gtcagtcagt tatttgtgta tgaaacaatg tacaaatcaa
     5641 tgttttgaaa ataatgatct caaactttct aagttaaatt ttaaaaaatt tgatcgtttg
     5701 ccatatcggg tgggtttact cttagaatcg catgctgtag aaatgctcaa aagtgcatat
     5761 aggactcagt ccttagatgt tctctttctt ttcagaaata acctctttaa agctgtagcc
     5821 attgctcctc tctgcacacg catcgcatcg gaagccgtgc agccagcggc tctacacact
     5881 cacctagcgg gacattcact gttttcttta ttcctttaaa aacaagtcct gttccaaacg
     5941 attgctgttg gaattggggg gtggggcggg gtgacaggga atggagaccc cggcctccct
     6001 ttgtggattc ctcacagccc ggctctcccg tggaaccagc cttttgcacc gaggcagacc
     6061 atttttctaa catgcagacg tccctggttt tgtgcgcgtc cagtgtggag cagtggcgtt
     6121 gggacggcac aggcctcctc cccgcaccaa gcactcccgt agaggcagca gcggcttctc
     6181 catcctgtgt ttgcaccatc ctgtgtgccc tgtgccctgg acccgcaaag agtgggacaa
     6241 gcaccaccac ccccacccca gccctacccc cctcagcacc cctgtagagc tctctgcacc
     6301 ctgtccctca ccttttgtat ttaattttaa agtcagtgta ctgcaaggaa gctggatgca
     6361 agatagatcc tatattcact gtactgttat ttaagatgta ataaagcagt ttgacatgag
     6421 gga
//
LOCUS       XM_032653308            3062 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein subunit beta 1 (GNB1),
            transcript variant X3, mRNA.
ACCESSION   XM_032653308
VERSION     XM_032653308.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3062
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3062
                     /gene="GNB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 27 long SRA reads, 54
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764574"
     CDS             314..1336
                     /gene="GNB1"
                     /codon_start=1
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-1"
                     /protein_id="XP_032509199.1"
                     /db_xref="GeneID:116764574"
                     /translation="MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNVDPVGRIQ
                     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT
                     CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS
                     SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC
                     RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELVTYSHDNIICGITSV
                     SFSRSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS
                     FLKIWN"
     misc_feature    455..1333
                     /gene="GNB1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    order(473..475,527..529,539..541,557..562,581..586,
                     653..655,665..667,683..688,734..739,788..790,800..802,
                     818..823,860..862,911..913,926..928,944..949,983..988,
                     1040..1042,1052..1054,1070..1075,1106..1111,1169..1171,
                     1184..1186,1202..1207,1241..1246,1298..1300,1310..1312,
                     1328..1333)
                     /gene="GNB1"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    485..598
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    614..736
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    749..856
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    875..982
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    998..1108
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1130..1240
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1256..1330
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 cgaggctgcg ggcaggggcc gccgcgccca tcccgatggc tggaggcgtc tgaggggcgg
       61 acggaggcgg cggcggcggc ggcggcggcg ggagcgggcg cgggcgcggg agtggagcag
      121 ccgccgcggg accgacagac tgagcctcgc cggcgcacct gcccgcagcg cccgcggagc
      181 ggcccgagcg cgaccatctc ccggagcggc ggccgaggcg gctgaggcgg cggggagcgg
      241 gcgcggcagg cgggacgcgg tgtcgagatc taagattctt tgaggtggct ttgaagagca
      301 ctaagattag aagatgagtg aacttgacca gttacggcag gaggccgaac agcttaaaaa
      361 ccagattaga gatgctagaa aagcgtgtgc cgatgcaact ctctcccaga tcacaaacaa
      421 cgtcgaccca gtgggaagaa tccagatgcg taccaggaga acgctgaggg ggcacttggc
      481 caaaatctac gccatgcact ggggcacaga ttccaggctt ctagttagtg cctcacagga
      541 tggtaagctt atcatctggg atagctacac cacgaacaag gttcatgcca tccctctgcg
      601 ttcctcgtgg gtcatgacat gtgcatatgc cccttctggc aactatgtgg cctgcggtgg
      661 cctggataac atttgctcca tttacaatct gaaaactcgt gaagggaatg tacgtgtgag
      721 tcgtgaactg gctggacata caggttacct gtcctgctgc cgttttctgg atgacaatca
      781 gattgttacc agctctggag acaccacctg tgccctgtgg gacattgaga ccggccagca
      841 gacgaccacg ttcacgggac acactggcga tgtcatgagc ctctcgctcg ctccggacac
      901 cagactgttt gtctctggtg cttgtgatgc ttcagccaaa ctctgggacg tgcgagaagg
      961 gatgtgccgg cagaccttca ccggccacga gtccgacatc aacgccatct gtttctttcc
     1021 aaacggcaac gcatttgcca ctggctcgga cgacgctacc tgcaggctgt tcgacctccg
     1081 cgcggatcag gagctcgtga cttactccca cgacaacatc atctgcggga tcacgtccgt
     1141 gtccttctcc aggagcgggc gcctcctgct cgcgggctac gacgacttca actgcaacgt
     1201 ctgggacgcc ctcaaggccg acagggcagg ggtcttggcc gggcatgaca accgcgtcag
     1261 ctgcctgggg gtgactgacg acgggatggc cgtggcaaca gggtcctggg acagcttcct
     1321 caagatctgg aactaacacc aacagcaggt ggacgccgct gtgactggaa gaccattcca
     1381 accttggagc gttacagtga tagcatttcc aatccacccc tactaacgcg gatgccctgc
     1441 acccctcaga acttcaaaag ggcaagacct tttcccttca cttattgctg aaaccaagag
     1501 cacaattccc attaagagaa gaatctctgt gctgtaaact aaaacaaatc gtgcattcct
     1561 tccgggacca ttgtctttgt ttttcttttt ttgtttgttt ttcttttttt tttgtcttga
     1621 atgaatttca aaggaaatac tataataaaa atgttaacca gaaggtaaac ttgagtgtaa
     1681 ttgtaaggca gacacacttt tctactagtt tctttgaatt ctagatcagt gatcctgttt
     1741 tgtgatgttc atggcgaaca agttgaggac ttcatcttgt aattgattct aagtttcaga
     1801 ttgtgtttgt aacaggattt tgcagacatt catatttcct tcttaaaata tattcctttc
     1861 tgttcagtag ttaaacagag aaagagggtc tagtgcagcc tctctggaat tgttaatgat
     1921 gtacatttag tccctagttg ttttactttc cgtctcgtgt cacatgatgg ctgtgtgcac
     1981 acacggcata gaagggtgat gctgagaagc caaggaacag agctcgcgcc gtggacgaac
     2041 agtgaacacc agttaggcac ctttgctccc caacccgccc tctctacctt ctcagttcag
     2101 tttttaatct caccctgggt ctccttgtga agttggaggg aagtttatac aacagcaaca
     2161 gcgcgacacg accgtgtgcc ccaccctgac cgtcaggagc ctctgctctc aagcgaggtg
     2221 cccgtcctgt gcttggatag tcagtcagtt atttgtgtat gaaacaatgt acaaatcaat
     2281 gttttgaaaa taatgatctc aaactttcta agttaaattt taaaaaattt gatcgtttgc
     2341 catatcgggt gggtttactc ttagaatcgc atgctgtaga aatgctcaaa agtgcatata
     2401 ggactcagtc cttagatgtt ctctttcttt tcagaaataa cctctttaaa gctgtagcca
     2461 ttgctcctct ctgcacacgc atcgcatcgg aagccgtgca gccagcggct ctacacactc
     2521 acctagcggg acattcactg ttttctttat tcctttaaaa acaagtcctg ttccaaacga
     2581 ttgctgttgg aattgggggg tggggcgggg tgacagggaa tggagacccc ggcctccctt
     2641 tgtggattcc tcacagcccg gctctcccgt ggaaccagcc ttttgcaccg aggcagacca
     2701 tttttctaac atgcagacgt ccctggtttt gtgcgcgtcc agtgtggagc agtggcgttg
     2761 ggacggcaca ggcctcctcc ccgcaccaag cactcccgta gaggcagcag cggcttctcc
     2821 atcctgtgtt tgcaccatcc tgtgtgccct gtgccctgga cccgcaaaga gtgggacaag
     2881 caccaccacc cccaccccag ccctaccccc ctcagcaccc ctgtagagct ctctgcaccc
     2941 tgtccctcac cttttgtatt taattttaaa gtcagtgtac tgcaaggaag ctggatgcaa
     3001 gatagatcct atattcactg tactgttatt taagatgtaa taaagcagtt tgacatgagg
     3061 ga
//
LOCUS       XM_032653316            3115 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein subunit beta 1 (GNB1),
            transcript variant X4, mRNA.
ACCESSION   XM_032653316
VERSION     XM_032653316.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3115
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3115
                     /gene="GNB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 54 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116764574"
     CDS             364..1386
                     /gene="GNB1"
                     /codon_start=1
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-1"
                     /protein_id="XP_032509207.1"
                     /db_xref="GeneID:116764574"
                     /translation="MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNVDPVGRIQ
                     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT
                     CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS
                     SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC
                     RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELVTYSHDNIICGITSV
                     SFSRSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS
                     FLKIWN"
     misc_feature    505..1383
                     /gene="GNB1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    order(523..525,577..579,589..591,607..612,631..636,
                     703..705,715..717,733..738,784..789,838..840,850..852,
                     868..873,910..912,961..963,976..978,994..999,1033..1038,
                     1090..1092,1102..1104,1120..1125,1156..1161,1219..1221,
                     1234..1236,1252..1257,1291..1296,1348..1350,1360..1362,
                     1378..1383)
                     /gene="GNB1"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    535..648
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    664..786
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    799..906
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    925..1032
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1048..1158
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1180..1290
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1306..1380
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ccgaggctgc gggcaggggc cgccgcgccc atcccgatgg ctggaggcgt ctgaggggcg
       61 gacggaggcg gcggcggcgg cggcggcggc gggagcgggc gcgggcgcgg gagtggagca
      121 gccgccgcgg gaccgacaga ctgagcctcg ccggcgcacc tgcccgcagc gcccgcggag
      181 cggcccgagc gcgaccatct cccggagcgg cggccgaggc ggctgaggcg gcggggagcg
      241 ggcgcggcag gcgggacgcg gtgtcgagac aattttacat gttttggaga ccagaccaga
      301 agcacttctg aattaagatc taagattctt tgaggtggct ttgaagagca ctaagattag
      361 aagatgagtg aacttgacca gttacggcag gaggccgaac agcttaaaaa ccagattaga
      421 gatgctagaa aagcgtgtgc cgatgcaact ctctcccaga tcacaaacaa cgtcgaccca
      481 gtgggaagaa tccagatgcg taccaggaga acgctgaggg ggcacttggc caaaatctac
      541 gccatgcact ggggcacaga ttccaggctt ctagttagtg cctcacagga tggtaagctt
      601 atcatctggg atagctacac cacgaacaag gttcatgcca tccctctgcg ttcctcgtgg
      661 gtcatgacat gtgcatatgc cccttctggc aactatgtgg cctgcggtgg cctggataac
      721 atttgctcca tttacaatct gaaaactcgt gaagggaatg tacgtgtgag tcgtgaactg
      781 gctggacata caggttacct gtcctgctgc cgttttctgg atgacaatca gattgttacc
      841 agctctggag acaccacctg tgccctgtgg gacattgaga ccggccagca gacgaccacg
      901 ttcacgggac acactggcga tgtcatgagc ctctcgctcg ctccggacac cagactgttt
      961 gtctctggtg cttgtgatgc ttcagccaaa ctctgggacg tgcgagaagg gatgtgccgg
     1021 cagaccttca ccggccacga gtccgacatc aacgccatct gtttctttcc aaacggcaac
     1081 gcatttgcca ctggctcgga cgacgctacc tgcaggctgt tcgacctccg cgcggatcag
     1141 gagctcgtga cttactccca cgacaacatc atctgcggga tcacgtccgt gtccttctcc
     1201 aggagcgggc gcctcctgct cgcgggctac gacgacttca actgcaacgt ctgggacgcc
     1261 ctcaaggccg acagggcagg ggtcttggcc gggcatgaca accgcgtcag ctgcctgggg
     1321 gtgactgacg acgggatggc cgtggcaaca gggtcctggg acagcttcct caagatctgg
     1381 aactaacacc aacagcagca ggtggacgcc gctgtgactg gaagaccatt ccaaccttgg
     1441 agcgttacag tgatagcatt tccaatccac ccctactaac gcggatgccc tgcacccctc
     1501 agaacttcaa aagggcaaga ccttttccct tcacttattg ctgaaaccaa gagcacaatt
     1561 cccattaaga gaagaatctc tgtgctgtaa actaaaacaa atcgtgcatt ccttccggga
     1621 ccattgtctt tgtttttctt tttttgtttg tttttctttt ttttttgtct tgaatgaatt
     1681 tcaaaggaaa tactataata aaaatgttaa ccagaaggta aacttgagtg taattgtaag
     1741 gcagacacac ttttctacta gtttctttga attctagatc agtgatcctg ttttgtgatg
     1801 ttcatggcga acaagttgag gacttcatct tgtaattgat tctaagtttc agattgtgtt
     1861 tgtaacagga ttttgcagac attcatattt ccttcttaaa atatattcct ttctgttcag
     1921 tagttaaaca gagaaagagg gtctagtgca gcctctctgg aattgttaat gatgtacatt
     1981 tagtccctag ttgttttact ttccgtctcg tgtcacatga tggctgtgtg cacacacggc
     2041 atagaagggt gatgctgaga agccaaggaa cagagctcgc gccgtggacg aacagtgaac
     2101 accagttagg cacctttgct ccccaacccg ccctctctac cttctcagtt cagtttttaa
     2161 tctcaccctg ggtctccttg tgaagttgga gggaagttta tacaacagca acagcgcgac
     2221 acgaccgtgt gccccaccct gaccgtcagg agcctctgct ctcaagcgag gtgcccgtcc
     2281 tgtgcttgga tagtcagtca gttatttgtg tatgaaacaa tgtacaaatc aatgttttga
     2341 aaataatgat ctcaaacttt ctaagttaaa ttttaaaaaa tttgatcgtt tgccatatcg
     2401 ggtgggttta ctcttagaat cgcatgctgt agaaatgctc aaaagtgcat ataggactca
     2461 gtccttagat gttctctttc ttttcagaaa taacctcttt aaagctgtag ccattgctcc
     2521 tctctgcaca cgcatcgcat cggaagccgt gcagccagcg gctctacaca ctcacctagc
     2581 gggacattca ctgttttctt tattccttta aaaacaagtc ctgttccaaa cgattgctgt
     2641 tggaattggg gggtggggcg gggtgacagg gaatggagac cccggcctcc ctttgtggat
     2701 tcctcacagc ccggctctcc cgtggaacca gccttttgca ccgaggcaga ccatttttct
     2761 aacatgcaga cgtccctggt tttgtgcgcg tccagtgtgg agcagtggcg ttgggacggc
     2821 acaggcctcc tccccgcacc aagcactccc gtagaggcag cagcggcttc tccatcctgt
     2881 gtttgcacca tcctgtgtgc cctgtgccct ggacccgcaa agagtgggac aagcaccacc
     2941 acccccaccc cagccctacc cccctcagca cccctgtaga gctctctgca ccctgtccct
     3001 caccttttgt atttaatttt aaagtcagtg tactgcaagg aagctggatg caagatagat
     3061 cctatattca ctgtactgtt atttaagatg taataaagca gtttgacatg aggga
//
LOCUS       XM_032653324            2916 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein subunit beta 1 (GNB1),
            transcript variant X5, mRNA.
ACCESSION   XM_032653324
VERSION     XM_032653324.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2916
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2916
                     /gene="GNB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 54 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 6 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116764574"
     CDS             165..1187
                     /gene="GNB1"
                     /codon_start=1
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-1"
                     /protein_id="XP_032509215.1"
                     /db_xref="GeneID:116764574"
                     /translation="MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNVDPVGRIQ
                     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT
                     CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS
                     SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC
                     RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELVTYSHDNIICGITSV
                     SFSRSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS
                     FLKIWN"
     misc_feature    306..1184
                     /gene="GNB1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    order(324..326,378..380,390..392,408..413,432..437,
                     504..506,516..518,534..539,585..590,639..641,651..653,
                     669..674,711..713,762..764,777..779,795..800,834..839,
                     891..893,903..905,921..926,957..962,1020..1022,1035..1037,
                     1053..1058,1092..1097,1149..1151,1161..1163,1179..1184)
                     /gene="GNB1"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    336..449
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    465..587
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    600..707
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    726..833
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    849..959
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    981..1091
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1107..1181
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 cgtcggccgg gaccgagacc gaagtcccgg gctcgggcct ggattggggc tccggggttt
       61 ggagtccaga caattttaca tgttttggag accagaccag aagcacttct gaattaagat
      121 ctaagattct ttgaggtggc tttgaagagc actaagatta gaagatgagt gaacttgacc
      181 agttacggca ggaggccgaa cagcttaaaa accagattag agatgctaga aaagcgtgtg
      241 ccgatgcaac tctctcccag atcacaaaca acgtcgaccc agtgggaaga atccagatgc
      301 gtaccaggag aacgctgagg gggcacttgg ccaaaatcta cgccatgcac tggggcacag
      361 attccaggct tctagttagt gcctcacagg atggtaagct tatcatctgg gatagctaca
      421 ccacgaacaa ggttcatgcc atccctctgc gttcctcgtg ggtcatgaca tgtgcatatg
      481 ccccttctgg caactatgtg gcctgcggtg gcctggataa catttgctcc atttacaatc
      541 tgaaaactcg tgaagggaat gtacgtgtga gtcgtgaact ggctggacat acaggttacc
      601 tgtcctgctg ccgttttctg gatgacaatc agattgttac cagctctgga gacaccacct
      661 gtgccctgtg ggacattgag accggccagc agacgaccac gttcacggga cacactggcg
      721 atgtcatgag cctctcgctc gctccggaca ccagactgtt tgtctctggt gcttgtgatg
      781 cttcagccaa actctgggac gtgcgagaag ggatgtgccg gcagaccttc accggccacg
      841 agtccgacat caacgccatc tgtttctttc caaacggcaa cgcatttgcc actggctcgg
      901 acgacgctac ctgcaggctg ttcgacctcc gcgcggatca ggagctcgtg acttactccc
      961 acgacaacat catctgcggg atcacgtccg tgtccttctc caggagcggg cgcctcctgc
     1021 tcgcgggcta cgacgacttc aactgcaacg tctgggacgc cctcaaggcc gacagggcag
     1081 gggtcttggc cgggcatgac aaccgcgtca gctgcctggg ggtgactgac gacgggatgg
     1141 ccgtggcaac agggtcctgg gacagcttcc tcaagatctg gaactaacac caacagcagc
     1201 aggtggacgc cgctgtgact ggaagaccat tccaaccttg gagcgttaca gtgatagcat
     1261 ttccaatcca cccctactaa cgcggatgcc ctgcacccct cagaacttca aaagggcaag
     1321 accttttccc ttcacttatt gctgaaacca agagcacaat tcccattaag agaagaatct
     1381 ctgtgctgta aactaaaaca aatcgtgcat tccttccggg accattgtct ttgtttttct
     1441 ttttttgttt gtttttcttt tttttttgtc ttgaatgaat ttcaaaggaa atactataat
     1501 aaaaatgtta accagaaggt aaacttgagt gtaattgtaa ggcagacaca cttttctact
     1561 agtttctttg aattctagat cagtgatcct gttttgtgat gttcatggcg aacaagttga
     1621 ggacttcatc ttgtaattga ttctaagttt cagattgtgt ttgtaacagg attttgcaga
     1681 cattcatatt tccttcttaa aatatattcc tttctgttca gtagttaaac agagaaagag
     1741 ggtctagtgc agcctctctg gaattgttaa tgatgtacat ttagtcccta gttgttttac
     1801 tttccgtctc gtgtcacatg atggctgtgt gcacacacgg catagaaggg tgatgctgag
     1861 aagccaagga acagagctcg cgccgtggac gaacagtgaa caccagttag gcacctttgc
     1921 tccccaaccc gccctctcta ccttctcagt tcagttttta atctcaccct gggtctcctt
     1981 gtgaagttgg agggaagttt atacaacagc aacagcgcga cacgaccgtg tgccccaccc
     2041 tgaccgtcag gagcctctgc tctcaagcga ggtgcccgtc ctgtgcttgg atagtcagtc
     2101 agttatttgt gtatgaaaca atgtacaaat caatgttttg aaaataatga tctcaaactt
     2161 tctaagttaa attttaaaaa atttgatcgt ttgccatatc gggtgggttt actcttagaa
     2221 tcgcatgctg tagaaatgct caaaagtgca tataggactc agtccttaga tgttctcttt
     2281 cttttcagaa ataacctctt taaagctgta gccattgctc ctctctgcac acgcatcgca
     2341 tcggaagccg tgcagccagc ggctctacac actcacctag cgggacattc actgttttct
     2401 ttattccttt aaaaacaagt cctgttccaa acgattgctg ttggaattgg ggggtggggc
     2461 ggggtgacag ggaatggaga ccccggcctc cctttgtgga ttcctcacag cccggctctc
     2521 ccgtggaacc agccttttgc accgaggcag accatttttc taacatgcag acgtccctgg
     2581 ttttgtgcgc gtccagtgtg gagcagtggc gttgggacgg cacaggcctc ctccccgcac
     2641 caagcactcc cgtagaggca gcagcggctt ctccatcctg tgtttgcacc atcctgtgtg
     2701 ccctgtgccc tggacccgca aagagtggga caagcaccac cacccccacc ccagccctac
     2761 ccccctcagc acccctgtag agctctctgc accctgtccc tcaccttttg tatttaattt
     2821 taaagtcagt gtactgcaag gaagctggat gcaagataga tcctatattc actgtactgt
     2881 tatttaagat gtaataaagc agtttgacat gaggga
//
LOCUS       XM_032653332            3131 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein subunit beta 1 (GNB1),
            transcript variant X6, mRNA.
ACCESSION   XM_032653332
VERSION     XM_032653332.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3131
                     /gene="GNB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 54 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764574"
     CDS             380..1402
                     /gene="GNB1"
                     /codon_start=1
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-1"
                     /protein_id="XP_032509223.1"
                     /db_xref="GeneID:116764574"
                     /translation="MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNVDPVGRIQ
                     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT
                     CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS
                     SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC
                     RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELVTYSHDNIICGITSV
                     SFSRSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS
                     FLKIWN"
     misc_feature    521..1399
                     /gene="GNB1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    order(539..541,593..595,605..607,623..628,647..652,
                     719..721,731..733,749..754,800..805,854..856,866..868,
                     884..889,926..928,977..979,992..994,1010..1015,1049..1054,
                     1106..1108,1118..1120,1136..1141,1172..1177,1235..1237,
                     1250..1252,1268..1273,1307..1312,1364..1366,1376..1378,
                     1394..1399)
                     /gene="GNB1"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    551..664
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    680..802
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    815..922
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    941..1048
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1064..1174
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1196..1306
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1322..1396
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ccgcggtgcg ggggcggggg cggtggggac cccgcggccg tcggccggga ccgagaccga
       61 agtcccgggc tcgggcctgg attggggctc cggggtttgg agtccagcac ccctcgtggc
      121 tggacttcag agtaaccatg gagcgtcctc cctgccagcc tgctgcctga gaaccatctt
      181 ttctcctgac tgtctggcca tgcgccgccc cctcccctgt gggccctgga aacccgtcgg
      241 ccaggctcat cagtctagtg tgctcagccc ttaggggtct aaagacaatt ttacatgttt
      301 tggagaccag accagaagca cttctgaatt aagatctaag attctttgag gtggctttga
      361 agagcactaa gattagaaga tgagtgaact tgaccagtta cggcaggagg ccgaacagct
      421 taaaaaccag attagagatg ctagaaaagc gtgtgccgat gcaactctct cccagatcac
      481 aaacaacgtc gacccagtgg gaagaatcca gatgcgtacc aggagaacgc tgagggggca
      541 cttggccaaa atctacgcca tgcactgggg cacagattcc aggcttctag ttagtgcctc
      601 acaggatggt aagcttatca tctgggatag ctacaccacg aacaaggttc atgccatccc
      661 tctgcgttcc tcgtgggtca tgacatgtgc atatgcccct tctggcaact atgtggcctg
      721 cggtggcctg gataacattt gctccattta caatctgaaa actcgtgaag ggaatgtacg
      781 tgtgagtcgt gaactggctg gacatacagg ttacctgtcc tgctgccgtt ttctggatga
      841 caatcagatt gttaccagct ctggagacac cacctgtgcc ctgtgggaca ttgagaccgg
      901 ccagcagacg accacgttca cgggacacac tggcgatgtc atgagcctct cgctcgctcc
      961 ggacaccaga ctgtttgtct ctggtgcttg tgatgcttca gccaaactct gggacgtgcg
     1021 agaagggatg tgccggcaga ccttcaccgg ccacgagtcc gacatcaacg ccatctgttt
     1081 ctttccaaac ggcaacgcat ttgccactgg ctcggacgac gctacctgca ggctgttcga
     1141 cctccgcgcg gatcaggagc tcgtgactta ctcccacgac aacatcatct gcgggatcac
     1201 gtccgtgtcc ttctccagga gcgggcgcct cctgctcgcg ggctacgacg acttcaactg
     1261 caacgtctgg gacgccctca aggccgacag ggcaggggtc ttggccgggc atgacaaccg
     1321 cgtcagctgc ctgggggtga ctgacgacgg gatggccgtg gcaacagggt cctgggacag
     1381 cttcctcaag atctggaact aacaccaaca gcagcaggtg gacgccgctg tgactggaag
     1441 accattccaa ccttggagcg ttacagtgat agcatttcca atccacccct actaacgcgg
     1501 atgccctgca cccctcagaa cttcaaaagg gcaagacctt ttcccttcac ttattgctga
     1561 aaccaagagc acaattccca ttaagagaag aatctctgtg ctgtaaacta aaacaaatcg
     1621 tgcattcctt ccgggaccat tgtctttgtt tttctttttt tgtttgtttt tctttttttt
     1681 ttgtcttgaa tgaatttcaa aggaaatact ataataaaaa tgttaaccag aaggtaaact
     1741 tgagtgtaat tgtaaggcag acacactttt ctactagttt ctttgaattc tagatcagtg
     1801 atcctgtttt gtgatgttca tggcgaacaa gttgaggact tcatcttgta attgattcta
     1861 agtttcagat tgtgtttgta acaggatttt gcagacattc atatttcctt cttaaaatat
     1921 attcctttct gttcagtagt taaacagaga aagagggtct agtgcagcct ctctggaatt
     1981 gttaatgatg tacatttagt ccctagttgt tttactttcc gtctcgtgtc acatgatggc
     2041 tgtgtgcaca cacggcatag aagggtgatg ctgagaagcc aaggaacaga gctcgcgccg
     2101 tggacgaaca gtgaacacca gttaggcacc tttgctcccc aacccgccct ctctaccttc
     2161 tcagttcagt ttttaatctc accctgggtc tccttgtgaa gttggaggga agtttataca
     2221 acagcaacag cgcgacacga ccgtgtgccc caccctgacc gtcaggagcc tctgctctca
     2281 agcgaggtgc ccgtcctgtg cttggatagt cagtcagtta tttgtgtatg aaacaatgta
     2341 caaatcaatg ttttgaaaat aatgatctca aactttctaa gttaaatttt aaaaaatttg
     2401 atcgtttgcc atatcgggtg ggtttactct tagaatcgca tgctgtagaa atgctcaaaa
     2461 gtgcatatag gactcagtcc ttagatgttc tctttctttt cagaaataac ctctttaaag
     2521 ctgtagccat tgctcctctc tgcacacgca tcgcatcgga agccgtgcag ccagcggctc
     2581 tacacactca cctagcggga cattcactgt tttctttatt cctttaaaaa caagtcctgt
     2641 tccaaacgat tgctgttgga attggggggt ggggcggggt gacagggaat ggagaccccg
     2701 gcctcccttt gtggattcct cacagcccgg ctctcccgtg gaaccagcct tttgcaccga
     2761 ggcagaccat ttttctaaca tgcagacgtc cctggttttg tgcgcgtcca gtgtggagca
     2821 gtggcgttgg gacggcacag gcctcctccc cgcaccaagc actcccgtag aggcagcagc
     2881 ggcttctcca tcctgtgttt gcaccatcct gtgtgccctg tgccctggac ccgcaaagag
     2941 tgggacaagc accaccaccc ccaccccagc cctacccccc tcagcacccc tgtagagctc
     3001 tctgcaccct gtccctcacc ttttgtattt aattttaaag tcagtgtact gcaaggaagc
     3061 tggatgcaag atagatccta tattcactgt actgttattt aagatgtaat aaagcagttt
     3121 gacatgaggg a
//
LOCUS       XM_032653341            2915 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein subunit beta 1 (GNB1),
            transcript variant X7, mRNA.
ACCESSION   XM_032653341
VERSION     XM_032653341.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2915
                     /gene="GNB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 54 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:116764574"
     CDS             167..1189
                     /gene="GNB1"
                     /codon_start=1
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-1"
                     /protein_id="XP_032509232.1"
                     /db_xref="GeneID:116764574"
                     /translation="MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNVDPVGRIQ
                     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT
                     CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS
                     SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC
                     RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELVTYSHDNIICGITSV
                     SFSRSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS
                     FLKIWN"
     misc_feature    308..1186
                     /gene="GNB1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    order(326..328,380..382,392..394,410..415,434..439,
                     506..508,518..520,536..541,587..592,641..643,653..655,
                     671..676,713..715,764..766,779..781,797..802,836..841,
                     893..895,905..907,923..928,959..964,1022..1024,1037..1039,
                     1055..1060,1094..1099,1151..1153,1163..1165,1181..1186)
                     /gene="GNB1"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    338..451
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    467..589
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    602..709
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    728..835
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    851..961
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    983..1093
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1109..1183
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 cagcccgagg gacttgatgc ctctagaagc ccagcacttc cccttctgct tccttcccgg
       61 cccgccccag cagctaatgg cgttttgtgg ctgtgaatag atgtgggctg gtgggtgcag
      121 atctaagatt ctttgaggtg gctttgaaga gcactaagat tagaagatga gtgaacttga
      181 ccagttacgg caggaggccg aacagcttaa aaaccagatt agagatgcta gaaaagcgtg
      241 tgccgatgca actctctccc agatcacaaa caacgtcgac ccagtgggaa gaatccagat
      301 gcgtaccagg agaacgctga gggggcactt ggccaaaatc tacgccatgc actggggcac
      361 agattccagg cttctagtta gtgcctcaca ggatggtaag cttatcatct gggatagcta
      421 caccacgaac aaggttcatg ccatccctct gcgttcctcg tgggtcatga catgtgcata
      481 tgccccttct ggcaactatg tggcctgcgg tggcctggat aacatttgct ccatttacaa
      541 tctgaaaact cgtgaaggga atgtacgtgt gagtcgtgaa ctggctggac atacaggtta
      601 cctgtcctgc tgccgttttc tggatgacaa tcagattgtt accagctctg gagacaccac
      661 ctgtgccctg tgggacattg agaccggcca gcagacgacc acgttcacgg gacacactgg
      721 cgatgtcatg agcctctcgc tcgctccgga caccagactg tttgtctctg gtgcttgtga
      781 tgcttcagcc aaactctggg acgtgcgaga agggatgtgc cggcagacct tcaccggcca
      841 cgagtccgac atcaacgcca tctgtttctt tccaaacggc aacgcatttg ccactggctc
      901 ggacgacgct acctgcaggc tgttcgacct ccgcgcggat caggagctcg tgacttactc
      961 ccacgacaac atcatctgcg ggatcacgtc cgtgtccttc tccaggagcg ggcgcctcct
     1021 gctcgcgggc tacgacgact tcaactgcaa cgtctgggac gccctcaagg ccgacagggc
     1081 aggggtcttg gccgggcatg acaaccgcgt cagctgcctg ggggtgactg acgacgggat
     1141 ggccgtggca acagggtcct gggacagctt cctcaagatc tggaactaac accaacagca
     1201 ggtggacgcc gctgtgactg gaagaccatt ccaaccttgg agcgttacag tgatagcatt
     1261 tccaatccac ccctactaac gcggatgccc tgcacccctc agaacttcaa aagggcaaga
     1321 ccttttccct tcacttattg ctgaaaccaa gagcacaatt cccattaaga gaagaatctc
     1381 tgtgctgtaa actaaaacaa atcgtgcatt ccttccggga ccattgtctt tgtttttctt
     1441 tttttgtttg tttttctttt ttttttgtct tgaatgaatt tcaaaggaaa tactataata
     1501 aaaatgttaa ccagaaggta aacttgagtg taattgtaag gcagacacac ttttctacta
     1561 gtttctttga attctagatc agtgatcctg ttttgtgatg ttcatggcga acaagttgag
     1621 gacttcatct tgtaattgat tctaagtttc agattgtgtt tgtaacagga ttttgcagac
     1681 attcatattt ccttcttaaa atatattcct ttctgttcag tagttaaaca gagaaagagg
     1741 gtctagtgca gcctctctgg aattgttaat gatgtacatt tagtccctag ttgttttact
     1801 ttccgtctcg tgtcacatga tggctgtgtg cacacacggc atagaagggt gatgctgaga
     1861 agccaaggaa cagagctcgc gccgtggacg aacagtgaac accagttagg cacctttgct
     1921 ccccaacccg ccctctctac cttctcagtt cagtttttaa tctcaccctg ggtctccttg
     1981 tgaagttgga gggaagttta tacaacagca acagcgcgac acgaccgtgt gccccaccct
     2041 gaccgtcagg agcctctgct ctcaagcgag gtgcccgtcc tgtgcttgga tagtcagtca
     2101 gttatttgtg tatgaaacaa tgtacaaatc aatgttttga aaataatgat ctcaaacttt
     2161 ctaagttaaa ttttaaaaaa tttgatcgtt tgccatatcg ggtgggttta ctcttagaat
     2221 cgcatgctgt agaaatgctc aaaagtgcat ataggactca gtccttagat gttctctttc
     2281 ttttcagaaa taacctcttt aaagctgtag ccattgctcc tctctgcaca cgcatcgcat
     2341 cggaagccgt gcagccagcg gctctacaca ctcacctagc gggacattca ctgttttctt
     2401 tattccttta aaaacaagtc ctgttccaaa cgattgctgt tggaattggg gggtggggcg
     2461 gggtgacagg gaatggagac cccggcctcc ctttgtggat tcctcacagc ccggctctcc
     2521 cgtggaacca gccttttgca ccgaggcaga ccatttttct aacatgcaga cgtccctggt
     2581 tttgtgcgcg tccagtgtgg agcagtggcg ttgggacggc acaggcctcc tccccgcacc
     2641 aagcactccc gtagaggcag cagcggcttc tccatcctgt gtttgcacca tcctgtgtgc
     2701 cctgtgccct ggacccgcaa agagtgggac aagcaccacc acccccaccc cagccctacc
     2761 cccctcagca cccctgtaga gctctctgca ccctgtccct caccttttgt atttaatttt
     2821 aaagtcagtg tactgcaagg aagctggatg caagatagat cctatattca ctgtactgtt
     2881 atttaagatg taataaagca gtttgacatg aggga
//
LOCUS       XM_032653350            3066 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein subunit beta 1 (GNB1),
            transcript variant X8, mRNA.
ACCESSION   XM_032653350
VERSION     XM_032653350.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3066
                     /gene="GNB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, 54
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764574"
     CDS             315..1337
                     /gene="GNB1"
                     /codon_start=1
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-1"
                     /protein_id="XP_032509241.1"
                     /db_xref="GeneID:116764574"
                     /translation="MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNVDPVGRIQ
                     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT
                     CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS
                     SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC
                     RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELVTYSHDNIICGITSV
                     SFSRSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS
                     FLKIWN"
     misc_feature    456..1334
                     /gene="GNB1"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cd00200"
                     /db_xref="CDD:238121"
     misc_feature    order(474..476,528..530,540..542,558..563,582..587,
                     654..656,666..668,684..689,735..740,789..791,801..803,
                     819..824,861..863,912..914,927..929,945..950,984..989,
                     1041..1043,1053..1055,1071..1076,1107..1112,1170..1172,
                     1185..1187,1203..1208,1242..1247,1299..1301,1311..1313,
                     1329..1334)
                     /gene="GNB1"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    486..599
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    615..737
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    750..857
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    876..983
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    999..1109
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1131..1241
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1257..1331
                     /gene="GNB1"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ccgaggctgc gggcaggggc cgccgcgccc atcccgatgg ctggaggcgt ctgaggggcg
       61 gacggaggcg gcggcggcgg cggcggcggc gggagcgggc gcgggcgcgg gagtggagca
      121 gccgccgcgg gaccgacaga ctgagcctcg ccggcgcacc tgcccgcagc gcccgcggag
      181 cggcccgagc gcgaccatct cccggagcgg cggccgaggc ggctgaggcg gcggggagcg
      241 ggcgcggcag gcgggacgcg gtgtcgagat ctaagattct ttgaggtggc tttgaagagc
      301 actaagatta gaagatgagt gaacttgacc agttacggca ggaggccgaa cagcttaaaa
      361 accagattag agatgctaga aaagcgtgtg ccgatgcaac tctctcccag atcacaaaca
      421 acgtcgaccc agtgggaaga atccagatgc gtaccaggag aacgctgagg gggcacttgg
      481 ccaaaatcta cgccatgcac tggggcacag attccaggct tctagttagt gcctcacagg
      541 atggtaagct tatcatctgg gatagctaca ccacgaacaa ggttcatgcc atccctctgc
      601 gttcctcgtg ggtcatgaca tgtgcatatg ccccttctgg caactatgtg gcctgcggtg
      661 gcctggataa catttgctcc atttacaatc tgaaaactcg tgaagggaat gtacgtgtga
      721 gtcgtgaact ggctggacat acaggttacc tgtcctgctg ccgttttctg gatgacaatc
      781 agattgttac cagctctgga gacaccacct gtgccctgtg ggacattgag accggccagc
      841 agacgaccac gttcacggga cacactggcg atgtcatgag cctctcgctc gctccggaca
      901 ccagactgtt tgtctctggt gcttgtgatg cttcagccaa actctgggac gtgcgagaag
      961 ggatgtgccg gcagaccttc accggccacg agtccgacat caacgccatc tgtttctttc
     1021 caaacggcaa cgcatttgcc actggctcgg acgacgctac ctgcaggctg ttcgacctcc
     1081 gcgcggatca ggagctcgtg acttactccc acgacaacat catctgcggg atcacgtccg
     1141 tgtccttctc caggagcggg cgcctcctgc tcgcgggcta cgacgacttc aactgcaacg
     1201 tctgggacgc cctcaaggcc gacagggcag gggtcttggc cgggcatgac aaccgcgtca
     1261 gctgcctggg ggtgactgac gacgggatgg ccgtggcaac agggtcctgg gacagcttcc
     1321 tcaagatctg gaactaacac caacagcagc aggtggacgc cgctgtgact ggaagaccat
     1381 tccaaccttg gagcgttaca gtgatagcat ttccaatcca cccctactaa cgcggatgcc
     1441 ctgcacccct cagaacttca aaagggcaag accttttccc ttcacttatt gctgaaacca
     1501 agagcacaat tcccattaag agaagaatct ctgtgctgta aactaaaaca aatcgtgcat
     1561 tccttccggg accattgtct ttgtttttct ttttttgttt gtttttcttt tttttttgtc
     1621 ttgaatgaat ttcaaaggaa atactataat aaaaatgtta accagaaggt aaacttgagt
     1681 gtaattgtaa ggcagacaca cttttctact agtttctttg aattctagat cagtgatcct
     1741 gttttgtgat gttcatggcg aacaagttga ggacttcatc ttgtaattga ttctaagttt
     1801 cagattgtgt ttgtaacagg attttgcaga cattcatatt tccttcttaa aatatattcc
     1861 tttctgttca gtagttaaac agagaaagag ggtctagtgc agcctctctg gaattgttaa
     1921 tgatgtacat ttagtcccta gttgttttac tttccgtctc gtgtcacatg atggctgtgt
     1981 gcacacacgg catagaaggg tgatgctgag aagccaagga acagagctcg cgccgtggac
     2041 gaacagtgaa caccagttag gcacctttgc tccccaaccc gccctctcta ccttctcagt
     2101 tcagttttta atctcaccct gggtctcctt gtgaagttgg agggaagttt atacaacagc
     2161 aacagcgcga cacgaccgtg tgccccaccc tgaccgtcag gagcctctgc tctcaagcga
     2221 ggtgcccgtc ctgtgcttgg atagtcagtc agttatttgt gtatgaaaca atgtacaaat
     2281 caatgttttg aaaataatga tctcaaactt tctaagttaa attttaaaaa atttgatcgt
     2341 ttgccatatc gggtgggttt actcttagaa tcgcatgctg tagaaatgct caaaagtgca
     2401 tataggactc agtccttaga tgttctcttt cttttcagaa ataacctctt taaagctgta
     2461 gccattgctc ctctctgcac acgcatcgca tcggaagccg tgcagccagc ggctctacac
     2521 actcacctag cgggacattc actgttttct ttattccttt aaaaacaagt cctgttccaa
     2581 acgattgctg ttggaattgg ggggtggggc ggggtgacag ggaatggaga ccccggcctc
     2641 cctttgtgga ttcctcacag cccggctctc ccgtggaacc agccttttgc accgaggcag
     2701 accatttttc taacatgcag acgtccctgg ttttgtgcgc gtccagtgtg gagcagtggc
     2761 gttgggacgg cacaggcctc ctccccgcac caagcactcc cgtagaggca gcagcggctt
     2821 ctccatcctg tgtttgcacc atcctgtgtg ccctgtgccc tggacccgca aagagtggga
     2881 caagcaccac cacccccacc ccagccctac ccccctcagc acccctgtag agctctctgc
     2941 accctgtccc tcaccttttg tatttaattt taaagtcagt gtactgcaag gaagctggat
     3001 gcaagataga tcctatattc actgtactgt tatttaagat gtaataaagc agtttgacat
     3061 gaggga
//
LOCUS       XM_032653360            1008 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus deoxyribonuclease 2 beta (DNASE2B),
            transcript variant X1, mRNA.
ACCESSION   XM_032653360
VERSION     XM_032653360.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1008
                     /gene="DNASE2B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 59% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764604"
     CDS             1..1008
                     /gene="DNASE2B"
                     /codon_start=1
                     /product="deoxyribonuclease-2-beta isoform X1"
                     /protein_id="XP_032509251.1"
                     /db_xref="GeneID:116764604"
                     /translation="MTARLLRTPLALLFLGLFGILKATTISCRNEEGEAVDWFTFYKL
                     PKRQDKESRETGVEYLYLDSATRSWRRSKQLMNTTKSVLGRTLQQLYEAYASEDNNTA
                     YLIYNDGVPKSMNYSRKYGHTKVPEEGYEYPPTGRRNGQTGICITFKYNQYEAIDSQL
                     LVCNPNVYSCSIPVTFHQELVHMPQLCARSSSSEIPGRHLTTLQSAQGQKFLHFAKSD
                     YFLDDIFAAWMAQRLKTHLLTETWQRKRQELPSNCSLPYHVYNVKAIKLSRQSYFSSY
                     QDHAKWCISQKGTKNRWTCIGDLNRSPHQAFRSGGFICTQNQHIYQAFQGLVLYYENC
                     N"
     misc_feature    79..969
                     /gene="DNASE2B"
                     /note="Deoxyribonuclease II; Region: DNase_II; pfam03265"
                     /db_xref="CDD:460868"
ORIGIN      
        1 atgacagcaa gacttctaag aacacccctg gctttgctct tccttggcct ctttgggatc
       61 ctgaaggcga caacaatatc gtgcagaaac gaggaaggtg aagctgtgga ttggtttaca
      121 ttttataagt tgcctaaaag gcaagacaag gaaagtcgag agactggggt agagtaccta
      181 tacctagact ctgcaaccag aagctggaga aggagtaagc aactaatgaa taccaccaag
      241 agtgttttgg gaaggacatt acagcagcta tatgaagcat atgcttccga ggataacaac
      301 acagcctatc taatatacaa tgatggagtc cctaaatcca tgaattacag cagaaagtat
      361 ggacacacca aagttcctga agaaggctat gagtatccac ccacagggag acgaaatgga
      421 caaactggca tctgcataac tttcaagtac aaccagtatg aagcaataga ttctcagctc
      481 ttggtctgca acccaaacgt ttatagctgt tccatcccag taacctttca ccaggagctc
      541 gttcacatgc cccagctgtg tgccagatcc agctcatcag agatccctgg ccggcatctc
      601 accacacttc agtcagccca gggacaaaaa ttcctccatt ttgcaaagtc tgattatttt
      661 cttgacgaca tctttgcagc ctggatggct caacggttga agactcactt gctaacagaa
      721 acctggcagc gaaagagaca agagcttcct tcaaactgct cccttcctta ccatgtctac
      781 aatgtcaaag caattaagtt atctagacaa tcttatttca gctcttatca ggatcatgcc
      841 aaatggtgta tttcccaaaa gggcaccaaa aatcgctgga catgtattgg agacctaaat
      901 cggagcccac accaagcctt cagaagtgga ggattcattt gtacccagaa tcagcatatt
      961 taccaagcat tccaaggatt agttttatat tatgagaact gtaactaa
//
LOCUS       XM_032653365            1009 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus deoxyribonuclease 2 beta (DNASE2B),
            transcript variant X2, mRNA.
ACCESSION   XM_032653365
VERSION     XM_032653365.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1009
                     /gene="DNASE2B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 64%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764604"
     CDS             75..869
                     /gene="DNASE2B"
                     /codon_start=1
                     /product="deoxyribonuclease-2-beta isoform X2"
                     /protein_id="XP_032509256.1"
                     /db_xref="GeneID:116764604"
                     /translation="MSLQDNNTAYLIYNDGVPKSMNYSRKYGHTKGLLLWNRIQGFWL
                     IHSIPHFPPIPEEGYEYPPTGRRNGQTGICITFKYNQYEAIDSQLLVCNPNVYSCSIP
                     VTFHQELVHMPQLCARSSSSEIPGRHLTTLQSAQGQKFLHFAKSDYFLDDIFAAWMAQ
                     RLKTHLLTETWQRKRQELPSNCSLPYHVYNVKAIKLSRQSYFSSYQDHAKWCISQKGT
                     KNRWTCIGDLNRSPHQAFRSGGFICTQNQHIYQAFQGLVLYYENCN"
     misc_feature    <84..830
                     /gene="DNASE2B"
                     /note="Deoxyribonuclease II; Region: DNase_II; pfam03265"
                     /db_xref="CDD:460868"
ORIGIN      
        1 attgcaggcc gggtagctgg tagaaatgtt gtgagcattt atgagtgaaa gatttatgcc
       61 attataaccc taaaatgtcc ctgcaggata acaacacagc ctatctaata tacaatgatg
      121 gagtccctaa atccatgaat tacagcagaa agtatggaca caccaaaggt ttacttctgt
      181 ggaacagaat ccaggggttc tggttgattc attccattcc ccattttcct ccaattcctg
      241 aagaaggcta tgagtatcca cccacaggga gacgaaatgg acaaactggc atctgcataa
      301 ctttcaagta caaccagtat gaagcaatag attctcagct cttggtctgc aacccaaacg
      361 tttatagctg ttccatccca gtaacctttc accaggagct cgttcacatg ccccagctgt
      421 gtgccagatc cagctcatca gagatccctg gccggcatct caccacactt cagtcagccc
      481 agggacaaaa attcctccat tttgcaaagt ctgattattt tcttgacgac atctttgcag
      541 cctggatggc tcaacggttg aagactcact tgctaacaga aacctggcag cgaaagagac
      601 aagagcttcc ttcaaactgc tcccttcctt accatgtcta caatgtcaaa gcaattaagt
      661 tatctagaca atcttatttc agctcttatc aggatcatgc caaatggtgt atttcccaaa
      721 agggcaccaa aaatcgctgg acatgtattg gagacctaaa tcggagccca caccaagcct
      781 tcagaagtgg aggattcatt tgtacccaga atcagcatat ttaccaagca ttccaaggat
      841 tagttttata ttatgagaac tgtaactaaa cttggtgaaa ggacatatgt gctatcattt
      901 tcaacactga tatggtatct tcttctacta gatctattct ttatatatta aaagcctgtg
      961 aatttactta tggtccacat accatcaaat aaaatgtttt tctcccatg
//
LOCUS       XM_032653375            2319 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 3
            (VAMP3), transcript variant X1, mRNA.
ACCESSION   XM_032653375
VERSION     XM_032653375.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2319
                     /gene="VAMP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 3 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764619"
     CDS             122..469
                     /gene="VAMP3"
                     /codon_start=1
                     /product="vesicle-associated membrane protein 3 isoform
                     X1"
                     /protein_id="XP_032509266.1"
                     /db_xref="GeneID:116764619"
                     /translation="MTTSAPAGSSAASGGSRRLQQTQNQVDEVVDIMRVNVDKVLERD
                     QKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGISVVIIIIVIIIGEFS
                     CPRLLAEVSSAHN"
     misc_feature    170..358
                     /gene="VAMP3"
                     /note="SNARE motif of VAMP2; Region: R-SNARE_VAMP2;
                     cd15870"
                     /db_xref="CDD:277223"
     misc_feature    order(173..181,185..190,194..211,215..223,227..229,
                     236..241,245..253,257..274,278..295,299..316,320..337,
                     341..349,356..358)
                     /gene="VAMP3"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277223"
     misc_feature    248..250
                     /gene="VAMP3"
                     /note="zero layer; other site"
                     /db_xref="CDD:277223"
ORIGIN      
        1 cccatcggcc catcccggtg acgtcaccgc ccccgcgccg ccccgcccag gtctgaggtc
       61 tcaggtctcc tgtcccgctg cgccggtccg ccgatcctcg cccgctgccg ccgctgccaa
      121 aatgactaca agcgcacctg cagggtcaag cgctgcttct ggcggtagta gaagacttca
      181 gcagacacaa aatcaagtgg atgaggtggt ggacatcatg agggtcaacg tggataaggt
      241 gttggaaaga gatcagaagc tctctgagtt ggatgaccgt gcagacgcac tgcaggcagg
      301 agcctcccaa tttgaaacga gtgctgccaa gctgaagaga aaatactggt ggaagaattg
      361 caagatgtgg gcaataggga tcagcgttgt catcatcatc atcgtcatca tcatcggtga
      421 gttctcctgc cccaggctcc ttgcagaagt ctcctctgct cacaactgac tgcatataca
      481 agaactccac ataaaagttc ctcggagatt gtggagtgtt tcttcctgaa gaaccagtga
      541 aactccagcc tgctgttcaa gaaacctctt caagagtttt gatttagaac ctgctatatt
      601 atcaagctta cctactgtta tatctaaaat gattattttc ttttcgtgac tgtaaagttc
      661 gttttctagg aaatgtgcct tcgttttgta atatgcactc caaactagag gtgtagtcag
      721 cccagccccc attttgcaca gtgccttttc aaatttacat atgggctgat gaagaggact
      781 tcttaagttg cagagtgtaa taacctagca gtaatgttgt ctgattaact gccagtgatt
      841 ccagttaagg aaatttgttc caagttagct gtcctagtca tatgacatta ccctcatttc
      901 aaacctttgg gtagtcagat tccaatttgt gccttccaga aagaacacta ctgcctaaca
      961 caaatacaga ctgtgcctta ttttgctatt tttctgattc cctttaagag aactctctac
     1021 tgtttataaa cactgctgac tctttggctg tatttaaaac aagatgctgg taaagagctt
     1081 ttgctcctgc cttagatatg aagatgttta ctttcttgtt actgttatgt atcacttgct
     1141 aaaaatattg ttttaatcag aaataataac ctcgttaaaa catttttata gaactgtggc
     1201 tgtgaccaaa gtttctgttt tgccaaaaag ttaaatccca gtcagatgtc aagtctgttc
     1261 ctggtagata agttcagaaa agtgaccagt gggactcaag gtgcccttca gaattaaaat
     1321 tgtaagattg tgtgtgaacc tctgacatcc tggcaggcct ttcttgccct tgaaaggctg
     1381 taggtcttgc gactctcctt ccgacccagc atttttcctg ggggttagag aaggtttgag
     1441 ctcgactgac catctcattc ctgtagacag agttttaccc agccatttgc agattatcag
     1501 ctgtagactc cgatatgttt ctaataatta tgtgaccaac agttctgtag tcttcaagtg
     1561 agaccatctg tgaactggtc attttctggt ccagttccca cggacgatag ctttttgggg
     1621 tttgtttcct attttgatcc atagtccact tcctaaatct gccttctaaa ttatgctctc
     1681 gattaggcat tggtcagggg gaacgagttt ttacagagga tagctaacca gagacacttt
     1741 ctttctttga tgtcacagac tgtctgcata agatgctgct ttgggaatag ctgttgtcat
     1801 ctgagaggct tttgttgtgt acgtgagact ttggacgtca gggtgtgtgg cttaaggaca
     1861 ggaattcagg taggaatgaa aacagacgag gcactgaggg gaaaggagtc ttaccgccct
     1921 gtggctcacc gttagcggaa tattctaaaa tgctttgttc acacactagt ttgtgactta
     1981 acaaagtgac agttaaggtg caccaggacc caggttccat ttctgtaata tctgttcccc
     2041 tgatatcagt gtaatggtgt gaagttgaaa ttatgccttg cagtgtgccc acctgggaag
     2101 gagggagcag ctgtcagtgt tgggacgttg gcccaccctc ggctcaggtc tccggccggg
     2161 tcgactctga atcctcggtg ctctctcctt ggcctcgatg ctcagtccca cgtaacccac
     2221 tggctgctgc gttaacccag gaatacttcg cctatatctg tgcatttagc tgggaagtcg
     2281 cccactataa caaactgaat aaagtgttta taaacataa
//
LOCUS       XR_004352961            2839 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 3
            (VAMP3), transcript variant X2, misc_RNA.
ACCESSION   XR_004352961
VERSION     XR_004352961.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2839
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2839
                     /gene="VAMP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764619"
     misc_RNA        1..2839
                     /gene="VAMP3"
                     /product="vesicle associated membrane protein 3,
                     transcript variant X2"
                     /db_xref="GeneID:116764619"
ORIGIN      
        1 cccatcggcc catcccggtg acgtcaccgc ccccgcgccg ccccgcccag gtctgaggtc
       61 tcaggtctcc tgtcccgctg cgccggtccg ccgatcctcg cccgctgccg ccgctgccaa
      121 aatgactaca agcgcacctg cagggtcaag cgctgcttct ggcggtagta gaagacttca
      181 gcagacacaa aatcaagtgg atgaggtggt ggacatcatg agggtcaacg tggataaggt
      241 gttggaaaga gatcagaagc tctctgagtt ggatgaccgt gcagacgcac tgcaggcagg
      301 agcctcccaa tttgaaacga gtgctgccaa gctgaagaga aaatactggt ggaagaattg
      361 caagatgtgg gcaataggga tcagcgttgt catcatcatc atcgtcatca tcatcggtga
      421 gttctcctgc cccaggctcc ttgcagaagt ctcctctgct cacaactgac tgcatataca
      481 agaactccac ataaaagttc ctcggagatg ttagtttatc ccaaaggttt ttgttttcgt
      541 tattaagtgt tttaagtact tgggtgctga gtctgagatt ttccaatata aacagtaatc
      601 ctttgaagtt agagaaaatg tactcatttc cactgaatga gtggaagtaa gttttctctc
      661 tgaatatatt ttcatcagag gtttcctttt atgagaaata gtgtagtcta gcgattaaaa
      721 gtgtgggcta cctgtgatcc accctagctc caccatccag ttgtgtggcc ttgggcaagt
      781 aatttaatat ctctgaacct cagtttcctc atttataaaa tggggataat aatagtacct
      841 acctcatatg tttgttatga ggacaaagct gttaatatat aaaaggtgct taggatggtg
      901 cctggcatat aataataata gttatataaa gaaatatata tacacgcaac tatcattatt
      961 attattatga tcatttctac tgctaccgtg tacaatactg gaacagccca ttgccattca
     1021 tagcccagta cgtgagaact atttaaagaa atatatcttg gatccttttt tagacagcct
     1081 cctctagccc tccaaaaaat gtagaaaagc cactaatagg aaattggaca gaaattgaat
     1141 ttctgttcac acttagactg cagtgtttga tgtttattct gtatttgcac tgaacgacta
     1201 aactgttgtt tttccacttt tttgcatctc ccctgcttat tagtgtggag tgtttcttcc
     1261 tgaagaacca gtgaaactcc agcctgctgt tcaagaaacc tcttcaagag ttttgattta
     1321 gaacctgcta tattatcaag cttacctact gttatatcta aaatgattat tttcttttcg
     1381 tgactgtaaa gttcgttttc taggaaatgt gccttcgttt tgtaatatgc actccaaact
     1441 agaggtgtag tcagcccagc ccccattttg cacagtgcct tttcaaattt acatatgggc
     1501 tgatgaagag gacttcttaa gttgcagagt gtaataacct agcagtaatg ttgtctgatt
     1561 aactgccagt gattccagtt aaggaaattt gttccaagtt agctgtccta gtcatatgac
     1621 attaccctca tttcaaacct ttgggtagtc agattccaat ttgtgccttc cagaaagaac
     1681 actactgcct aacacaaata cagactgtgc cttattttgc tatttttctg attcccttta
     1741 agagaactct ctactgttta taaacactgc tgactctttg gctgtattta aaacaagatg
     1801 ctggtaaaga gcttttgctc ctgccttaga tatgaagatg tttactttct tgttactgtt
     1861 atgtatcact tgctaaaaat attgttttaa tcagaaataa taacctcgtt aaaacatttt
     1921 tatagaactg tggctgtgac caaagtttct gttttgccaa aaagttaaat cccagtcaga
     1981 tgtcaagtct gttcctggta gataagttca gaaaagtgac cagtgggact caaggtgccc
     2041 ttcagaatta aaattgtaag attgtgtgtg aacctctgac atcctggcag gcctttcttg
     2101 cccttgaaag gctgtaggtc ttgcgactct ccttccgacc cagcattttt cctgggggtt
     2161 agagaaggtt tgagctcgac tgaccatctc attcctgtag acagagtttt acccagccat
     2221 ttgcagatta tcagctgtag actccgatat gtttctaata attatgtgac caacagttct
     2281 gtagtcttca agtgagacca tctgtgaact ggtcattttc tggtccagtt cccacggacg
     2341 atagcttttt ggggtttgtt tcctattttg atccatagtc cacttcctaa atctgccttc
     2401 taaattatgc tctcgattag gcattggtca gggggaacga gtttttacag aggatagcta
     2461 accagagaca ctttctttct ttgatgtcac agactgtctg cataagatgc tgctttggga
     2521 atagctgttg tcatctgaga ggcttttgtt gtgtacgtga gactttggac gtcagggtgt
     2581 gtggcttaag gacaggaatt cagtgtgccc acctgggaag gagggagcag ctgtcagtgt
     2641 tgggacgttg gcccaccctc ggctcaggtc tccggccggg tcgactctga atcctcggtg
     2701 ctctctcctt ggcctcgatg ctcagtccca cgtaacccac tggctgctgc gttaacccag
     2761 gaatacttcg cctatatctg tgcatttagc tgggaagtcg cccactataa caaactgaat
     2821 aaagtgttta taaacataa
//
LOCUS       XM_032653387            2226 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 3
            (VAMP3), transcript variant X3, mRNA.
ACCESSION   XM_032653387
VERSION     XM_032653387.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2226
                     /gene="VAMP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764619"
     CDS             122..436
                     /gene="VAMP3"
                     /codon_start=1
                     /product="vesicle-associated membrane protein 3 isoform
                     X2"
                     /protein_id="XP_032509278.1"
                     /db_xref="GeneID:116764619"
                     /translation="MTTSAPAGSSAASGGSRRLQQTQNQVDEVVDIMRVNVDKVLERD
                     QKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGISVVIIIIVIIIVWSV
                     SS"
     misc_feature    170..358
                     /gene="VAMP3"
                     /note="SNARE motif of VAMP2; Region: R-SNARE_VAMP2;
                     cd15870"
                     /db_xref="CDD:277223"
     misc_feature    order(173..181,185..190,194..211,215..223,227..229,
                     236..241,245..253,257..274,278..295,299..316,320..337,
                     341..349,356..358)
                     /gene="VAMP3"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277223"
     misc_feature    248..250
                     /gene="VAMP3"
                     /note="zero layer; other site"
                     /db_xref="CDD:277223"
ORIGIN      
        1 cccatcggcc catcccggtg acgtcaccgc ccccgcgccg ccccgcccag gtctgaggtc
       61 tcaggtctcc tgtcccgctg cgccggtccg ccgatcctcg cccgctgccg ccgctgccaa
      121 aatgactaca agcgcacctg cagggtcaag cgctgcttct ggcggtagta gaagacttca
      181 gcagacacaa aatcaagtgg atgaggtggt ggacatcatg agggtcaacg tggataaggt
      241 gttggaaaga gatcagaagc tctctgagtt ggatgaccgt gcagacgcac tgcaggcagg
      301 agcctcccaa tttgaaacga gtgctgccaa gctgaagaga aaatactggt ggaagaattg
      361 caagatgtgg gcaataggga tcagcgttgt catcatcatc atcgtcatca tcatcgtgtg
      421 gagtgtttct tcctgaagaa ccagtgaaac tccagcctgc tgttcaagaa acctcttcaa
      481 gagttttgat ttagaacctg ctatattatc aagcttacct actgttatat ctaaaatgat
      541 tattttcttt tcgtgactgt aaagttcgtt ttctaggaaa tgtgccttcg ttttgtaata
      601 tgcactccaa actagaggtg tagtcagccc agcccccatt ttgcacagtg ccttttcaaa
      661 tttacatatg ggctgatgaa gaggacttct taagttgcag agtgtaataa cctagcagta
      721 atgttgtctg attaactgcc agtgattcca gttaaggaaa tttgttccaa gttagctgtc
      781 ctagtcatat gacattaccc tcatttcaaa cctttgggta gtcagattcc aatttgtgcc
      841 ttccagaaag aacactactg cctaacacaa atacagactg tgccttattt tgctattttt
      901 ctgattccct ttaagagaac tctctactgt ttataaacac tgctgactct ttggctgtat
      961 ttaaaacaag atgctggtaa agagcttttg ctcctgcctt agatatgaag atgtttactt
     1021 tcttgttact gttatgtatc acttgctaaa aatattgttt taatcagaaa taataacctc
     1081 gttaaaacat ttttatagaa ctgtggctgt gaccaaagtt tctgttttgc caaaaagtta
     1141 aatcccagtc agatgtcaag tctgttcctg gtagataagt tcagaaaagt gaccagtggg
     1201 actcaaggtg cccttcagaa ttaaaattgt aagattgtgt gtgaacctct gacatcctgg
     1261 caggcctttc ttgcccttga aaggctgtag gtcttgcgac tctccttccg acccagcatt
     1321 tttcctgggg gttagagaag gtttgagctc gactgaccat ctcattcctg tagacagagt
     1381 tttacccagc catttgcaga ttatcagctg tagactccga tatgtttcta ataattatgt
     1441 gaccaacagt tctgtagtct tcaagtgaga ccatctgtga actggtcatt ttctggtcca
     1501 gttcccacgg acgatagctt tttggggttt gtttcctatt ttgatccata gtccacttcc
     1561 taaatctgcc ttctaaatta tgctctcgat taggcattgg tcagggggaa cgagttttta
     1621 cagaggatag ctaaccagag acactttctt tctttgatgt cacagactgt ctgcataaga
     1681 tgctgctttg ggaatagctg ttgtcatctg agaggctttt gttgtgtacg tgagactttg
     1741 gacgtcaggg tgtgtggctt aaggacagga attcaggtag gaatgaaaac agacgaggca
     1801 ctgaggggaa aggagtctta ccgccctgtg gctcaccgtt agcggaatat tctaaaatgc
     1861 tttgttcaca cactagtttg tgacttaaca aagtgacagt taaggtgcac caggacccag
     1921 gttccatttc tgtaatatct gttcccctga tatcagtgta atggtgtgaa gttgaaatta
     1981 tgccttgcag tgtgcccacc tgggaaggag ggagcagctg tcagtgttgg gacgttggcc
     2041 caccctcggc tcaggtctcc ggccgggtcg actctgaatc ctcggtgctc tctccttggc
     2101 ctcgatgctc agtcccacgt aacccactgg ctgctgcgtt aacccaggaa tacttcgcct
     2161 atatctgtgc atttagctgg gaagtcgccc actataacaa actgaataaa gtgtttataa
     2221 acataa
//
LOCUS       XR_004352963            2012 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 3
            (VAMP3), transcript variant X4, misc_RNA.
ACCESSION   XR_004352963
VERSION     XR_004352963.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2012
                     /gene="VAMP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764619"
     misc_RNA        1..2012
                     /gene="VAMP3"
                     /product="vesicle associated membrane protein 3,
                     transcript variant X4"
                     /db_xref="GeneID:116764619"
ORIGIN      
        1 cccatcggcc catcccggtg acgtcaccgc ccccgcgccg ccccgcccag gtctgaggtc
       61 tcaggtctcc tgtcccgctg cgccggtccg ccgatcctcg cccgctgccg ccgctgccaa
      121 aatgactaca agcgcacctg cagggtcaag cgctgcttct ggcggtagta gaagacttca
      181 gcagacacaa aatcaagtgg atgaggtggt ggacatcatg agggtcaacg tggataaggt
      241 gttggaaaga gatcagaagc tctctgagtt ggatgaccgt gcagacgcac tgcaggcagg
      301 agcctcccaa tttgaaacga gtgctgccaa gctgaagaga aaatactggt ggaagaattg
      361 caagatgtgg gcaataggga tcagcgttgt catcatcatc atcgtcatca tcatcgtgtg
      421 gagtgtttct tcctgaagaa ccagtgaaac tccagcctgc tgttcaagaa acctcttcaa
      481 gagttttgat ttagaacctg ctatattatc aagcttacct actgttatat ctaaaatgat
      541 tattttcttt tcgtgactgt aaagttcgtt ttctaggaaa tgtgccttcg ttttgtaata
      601 tgcactccaa actagaggtg tagtcagccc agcccccatt ttgcacagtg ccttttcaaa
      661 tttacatatg ggctgatgaa gaggacttct taagttgcag agtgtaataa cctagcagta
      721 atgttgtctg attaactgcc agtgattcca gttaaggaaa tttgttccaa gttagctgtc
      781 ctagtcatat gacattaccc tcatttcaaa cctttgggta gtcagattcc aatttgtgcc
      841 ttccagaaag aacactactg cctaacacaa atacagactg tgccttattt tgctattttt
      901 ctgattccct ttaagagaac tctctactgt ttataaacac tgctgactct ttggctgtat
      961 ttaaaacaag atgctggtaa agagcttttg ctcctgcctt agatatgaag atgtttactt
     1021 tcttgttact gttatgtatc acttgctaaa aatattgttt taatcagaaa taataacctc
     1081 gttaaaacat ttttatagaa ctgtggctgt gaccaaagtt tctgttttgc caaaaagtta
     1141 aatcccagtc agatgtcaag tctgttcctg gtagataagt tcagaaaagt gaccagtggg
     1201 actcaaggtg cccttcagaa ttaaaattgt aagattgtgt gtgaacctct gacatcctgg
     1261 caggcctttc ttgcccttga aaggctgtag gtcttgcgac tctccttccg acccagcatt
     1321 tttcctgggg gttagagaag gtttgagctc gactgaccat ctcattcctg tagacagagt
     1381 tttacccagc catttgcaga ttatcagctg tagactccga tatgtttcta ataattatgt
     1441 gaccaacagt tctgtagtct tcaagtgaga ccatctgtga actggtcatt ttctggtcca
     1501 gttcccacgg acgatagctt tttggggttt gtttcctatt ttgatccata gtccacttcc
     1561 taaatctgcc ttctaaatta tgctctcgat taggcattgg tcagggggaa cgagttttta
     1621 cagaggatag ctaaccagag acactttctt tctttgatgt cacagactgt ctgcataaga
     1681 tgctgctttg ggaatagctg ttgtcatctg agaggctttt gttgtgtacg tgagactttg
     1741 gacgtcaggg tgtgtggctt aaggacagga attcagtgtg cccacctggg aaggagggag
     1801 cagctgtcag tgttgggacg ttggcccacc ctcggctcag gtctccggcc gggtcgactc
     1861 tgaatcctcg gtgctctctc cttggcctcg atgctcagtc ccacgtaacc cactggctgc
     1921 tgcgttaacc caggaatact tcgcctatat ctgtgcattt agctgggaag tcgcccacta
     1981 taacaaactg aataaagtgt ttataaacat aa
//
LOCUS       XR_004352964            1995 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 3
            (VAMP3), transcript variant X5, misc_RNA.
ACCESSION   XR_004352964
VERSION     XR_004352964.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1995
                     /gene="VAMP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 5 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764619"
     misc_RNA        1..1995
                     /gene="VAMP3"
                     /product="vesicle associated membrane protein 3,
                     transcript variant X5"
                     /db_xref="GeneID:116764619"
ORIGIN      
        1 cccatcggcc catcccggtg acgtcaccgc ccccgcgccg ccccgcccag gtctgaggtc
       61 tcaggtctcc tgtcccgctg cgccggtccg ccgatcctcg cccgctgccg ccgctgccaa
      121 aatgactaca agcgcacctg cagggtcaag cgctgcttct ggcggtagta gaagacttca
      181 gcagacacaa aatcaagtgg atgaggtggt ggacatcatg agggtcaacg tggataaggt
      241 gttggaaaga gatcagaagc tctctgagtt ggatgaccgt gcagacgcac tgcaggcagg
      301 agcctcccaa tttgaaacga gtgctgccaa gctgaagaga aaatactggt ggaagaattg
      361 caagatgtgg gcaataggga tcagcgttgt catcatcatc atcgtcatca tcatcgtgtg
      421 gagtgtttct tcctgaagaa ccagtgaaac tccagcctgc tgttcaagaa acctcttcaa
      481 gagttttgat ttagaacctg ctatattatc aagcttacct actgttatat ctaaaatgat
      541 tattttcttt tcgtgactgt aaagttcgtt ttctaggaaa tgtgccttcg ttttgtaata
      601 tgcactccaa actagaggtg tagtcagccc agcccccatt ttgcacagtg ccttttcaaa
      661 tttacatatg ggctgatgaa gaggacttct taagttgcag agtgtaataa cctagcagta
      721 atgttgtctg attaactgcc agtgattcca gttaaggaaa tttgttccaa gttagctgtc
      781 ctagtcatat gacattaccc tcatttcaaa cctttgggta gtcagattcc aatttgtgcc
      841 ttccagaaag aacactactg cctaacacaa atacagactg tgccttattt tgctattttt
      901 ctgattccct ttaagagaac tctctactgt ttataaacac tgctgactct ttggctgtat
      961 ttaaaacaag atgctggtaa agagcttttg ctcctgcctt agatatgaag atgtttactt
     1021 tcttgttact gttatgtatc acttgctaaa aatattgttt taatcagaaa taataacctc
     1081 gttaaaacat ttttatagaa ctgtggctgt gaccaaagtt tctgttttgc caaaaagtta
     1141 aatcccagtc agatgtcaag tctgttcctg gtagataagt tcagaaaagt gaccagtggg
     1201 actcaaggtg cccttcagaa ttaaaattgt aagattgtgt gtgaacctct gacatcctgg
     1261 caggcctttc ttgcccttga aaggctgtag gtcttgcgac tctccttccg acccagcatt
     1321 tttcctgggg gttagagaag gtttgagctc gactgaccat ctcattcctg tagacagagt
     1381 tttacccagc catttgcaga ttatcagctg tagactccga tatgtttcta ataattatgt
     1441 gaccaacagt tctgtagtct tcaagtgaga ccatctgtga actggtcatt ttctggtcca
     1501 gttcccacgg acgatagctt tttggggttt gtttcctatt ttgatccata gtccacttcc
     1561 taaatctgcc ttctaaatta tgctctcgat taggcattgg tcagggggaa cgagttttta
     1621 cagaggatag ctaaccagag acactttctt tctttgatgt cacagactgt ctgcataaga
     1681 tgctgctttg ggaatagctg ttgtcatctg agaggctttt gttgtgtacg tgagactttg
     1741 gacgtcaggg tgtgtggctt aaggacagga attcaggagg gagcagctgt cagtgttggg
     1801 acgttggccc accctcggct caggtctccg gccgggtcga ctctgaatcc tcggtgctct
     1861 ctccttggcc tcgatgctca gtcccacgta acccactggc tgctgcgtta acccaggaat
     1921 acttcgccta tatctgtgca tttagctggg aagtcgccca ctataacaaa ctgaataaag
     1981 tgtttataaa cataa
//
LOCUS       XR_004352965            1873 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vesicle associated membrane protein 3
            (VAMP3), transcript variant X6, misc_RNA.
ACCESSION   XR_004352965
VERSION     XR_004352965.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1873
                     /gene="VAMP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 5 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764619"
     misc_RNA        1..1873
                     /gene="VAMP3"
                     /product="vesicle associated membrane protein 3,
                     transcript variant X6"
                     /db_xref="GeneID:116764619"
ORIGIN      
        1 cccatcggcc catcccggtg acgtcaccgc ccccgcgccg ccccgcccag gtctgaggtc
       61 tcaggtctcc tgtcccgctg cgccggtccg ccgatcctcg cccgctgccg ccgctgccaa
      121 aatgactaca agcgcacctg cagggtcaag cgctgcttct ggcggtagta gaagacttca
      181 gcagacacaa aatcaagtgg atgaggtggt ggacatcatg agggtcaacg tggataaggt
      241 gttggaaaga gatcagaagc tctctgagtt ggatgaccgt gcagacgcac tgcaggcagg
      301 agcctcccaa tttgaaacga gtgctgccaa gctgaagaga aaatactggt ggaagaattg
      361 caagatgtgg gcaataggga tcagcgttgt catcatcatc atcgtcatca tcatcgtgtg
      421 gagtgtttct tcctgaagaa ccagtgaaac tccagcctgc tgttcaagaa acctcttcaa
      481 gagttttgat ttagaacctg ctatattatc aagcttacct actgttatat ctaaaatgat
      541 tattttcttt tcgtgactgt aaagttcgtt ttctaggaaa tgtgccttcg ttttgtaata
      601 tgcactccaa actagaggtg tagtcagccc agcccccatt ttgcacagtg ccttttcaaa
      661 tttacatatg ggctgatgaa gaggacttct taagttgcag agtgtaataa cctagcagta
      721 atgttgtctg attaactgcc agtgattcca gttaaggaaa tttgttccaa gttagctgtc
      781 ctagtcatat gacattaccc tcatttcaaa cctttgggta gtcagattcc aatttgtgcc
      841 ttccagaaag aacactactg cctaacacaa atacagactg tgccttattt tgctattttt
      901 ctgattccct ttaagagaac tctctactgt ttataaacac tgctgactct ttggctgtat
      961 ttaaaacaag atgctggtaa agagcttttg ctcctgcctt agatatgaag atgtttactt
     1021 tcttgttact gttatgtatc acttgctaaa aatattgttt taatcagaaa taataacctc
     1081 gttaaaacat ttttatagaa ctgtggctgt gaccaaagtt tctgttttgc caaaaagtta
     1141 aatcccagtc agatgtcaag tctgttcctg gtagataagt tcagaaaagt gaccagtggg
     1201 actcaaggtg cccttcagaa ttaaaattgt aagattgtgt gtgaacctct gacatcctgg
     1261 caggcctttc ttgcccttga aaggctgtag gtcttgcgac tctccttccg acccagcatt
     1321 tttcctgggg gttagagaag gtttgagctc gactgaccat ctcattcctg tagacagagt
     1381 tttacccagc catttgcaga ttatcagctg tagactccga tatgtttcta ataattatgt
     1441 gaccaacagt tctgtagtct tcaagtgaga ccatctgtga actggtcatt ttctggtcca
     1501 gttcccacgg acgatagctt tttgggactg tctgcataag atgctgcttt gggaatagct
     1561 gttgtcatct gagaggcttt tgttgtgtac gtgagacttt ggacgtcagg gtgtgtggct
     1621 taaggacagg aattcagtgt gcccacctgg gaaggaggga gcagctgtca gtgttgggac
     1681 gttggcccac cctcggctca ggtctccggc cgggtcgact ctgaatcctc ggtgctctct
     1741 ccttggcctc gatgctcagt cccacgtaac ccactggctg ctgcgttaac ccaggaatac
     1801 ttcgcctata tctgtgcatt tagctgggaa gtcgcccact ataacaaact gaataaagtg
     1861 tttataaaca taa
//
LOCUS       XM_032653409            2021 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate-binding protein 1-like
            (LOC116764638), transcript variant X1, mRNA.
ACCESSION   XM_032653409
VERSION     XM_032653409.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2021
                     /gene="LOC116764638"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764638"
     CDS             67..1998
                     /gene="LOC116764638"
                     /codon_start=1
                     /product="guanylate-binding protein 1-like isoform X1"
                     /protein_id="XP_032509300.1"
                     /db_xref="GeneID:116764638"
                     /translation="MASETHMSGPECLIENTNGRLLVNPKALKILSAIQQPVVVVAIV
                     GLYRTGKSYLMNKLAGENKGFSLGSTVQSHTKGIWMWCVPHPKKPERTLVLLDTEGLG
                     DVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQAMDQLHYVTELTDRIRAKASPDV
                     DGVEDSADFVSFFPDFVWTLRDFSLDLEADGQSITADEYLENSLKLKKGTSQKDKNFN
                     LPRLCIRKFFPKKKCFIFDRPTDRKKLGQLEELCDDKLDPEFVQQAAVFCSYIFRNSK
                     TKTLSGGIKVNGPRLETLVQTYVSAINSGDLPCMENAVLALSEIENTAAVKKAIAHYD
                     QQMDQKLQLPTETLQELLDLHRTIEKEAIEVFMRMSWKDIDHLFQKELAPPPLWSSGF
                     GRAGSAAMAHGPSCSVECGIFPHWGTNPCPLHRQADSQPLCHQAQLDEKRDDFCKKNR
                     KASSDRCSALLKDIFSPLEEGVKEGIYSKPGGYRLFIEKIQELKKKYLQEPRKGIQAE
                     EILQEYLKSKESVTAAILQTDQTLSEKDRLIEVERVKAESAQAAAKMLEEMQIKNQQM
                     MEQKEKSYQEHVKQLTEKMERDRAQLLEEQERTLSLKLQEQRRLLQEGFQEENRRLHE
                     EIQNLQKKMKKPRKQCCLS"
     misc_feature    118..906
                     /gene="LOC116764638"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    910..1956
                     /gene="LOC116764638"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 gcacgaaccc atgtgctctg catcggcagg ccgactctca accactgcac caccagacaa
       61 gggaacatgg cctcagagac ccacatgtca ggcccagagt gcctcatcga gaacactaat
      121 gggcgactgt tggttaatcc gaaagctctg aagatcctgt ctgccattca gcagcccgtt
      181 gtggtggtgg ctatcgtggg cctctaccgc accggtaaat cctacctgat gaacaagctg
      241 gctggggaga acaagggttt ttctctgggc tccacggtgc agtctcacac gaagggcatc
      301 tggatgtggt gtgtgcctca tcccaagaag ccagaacgta ctctagttct gcttgatact
      361 gagggcctgg gggatgtgga gaagggtgac aaccagaatg actcctggat atttgcccta
      421 gcaatactcc tgagcagcac ttttgtgtac aatagtatgg gaaccatcaa ccagcaggcc
      481 atggaccaac ttcactatgt gacggagctc acagatagaa tcagggcaaa agcttcacct
      541 gatgtggatg gggttgagga ttcagctgac tttgtgagct tctttccaga ctttgtatgg
      601 acactgaggg atttctccct agacttggag gcagatggac aatccatcac agcagacgag
      661 tacctggaga attcactcaa gcttaagaaa ggtaccagtc aaaaagataa aaattttaat
      721 ctgcctcgac tctgtatccg gaagttcttc ccaaagaaga aatgctttat cttcgatcgg
      781 cccactgata ggaagaaact gggccagctt gaggaactgt gtgatgataa gctggacccc
      841 gaatttgtgc aacaagctgc agtcttctgt tcctacatct ttagaaattc caaaactaaa
      901 accctttcag gaggcatcaa ggtcaatgga cctcgtctag aaaccctggt gcagacctat
      961 gtcagtgcca tcaatagtgg ggatctgccc tgcatggaga atgcagtcct ggccttgtct
     1021 gagatcgaga acacagctgc agtgaaaaag gccattgccc actatgacca gcagatggat
     1081 cagaagctgc agctgcccac ggaaaccctc caggagctgc tggacctgca caggactatt
     1141 gagaaggagg ccattgaagt cttcatgagg atgtcctgga aagatataga ccatttattt
     1201 caaaaggaat tagcgcctcc cccattgtgg agctcaggct tcggacgcgc aggctcagca
     1261 gccatggctc acgggcccag ctgctccgtg gaatgtggga tcttcccgca ctggggcacg
     1321 aacccgtgtc ccctgcatcg gcaggcggac tctcaaccac tgtgccacca ggcccagcta
     1381 gacgaaaagc gagatgactt ttgtaaaaag aatcgtaaag catcatcaga tcgttgctca
     1441 gctttactta aggatatttt cagtcctcta gaagaaggtg tgaaagaggg gatttattct
     1501 aaaccaggag gctatcgcct cttcattgaa aagatacaag agctgaagaa aaagtatctt
     1561 caggagccca ggaagggaat acaggctgaa gaaattcttc aggaatactt gaagtccaag
     1621 gagtctgtga ctgctgcaat tctacagaca gaccagactc tctcagagaa ggacaggttg
     1681 attgaagtgg aacgtgtgaa agctgaatct gcacaagctg cagcaaaaat gctggaggaa
     1741 atgcaaataa agaatcagca gatgatggaa cagaaagaaa agagttatca ggaacatgtg
     1801 aaacaactga ctgagaagat ggagagggat agggcccagt tgctggaaga gcaagagaga
     1861 actctctctc tcaaacttca ggaacagcgc cgactactac aggaaggatt ccaagaagag
     1921 aacagacgac ttcatgaaga aatacagaat ctccagaaga agatgaaaaa accaaggaag
     1981 caatgttgcc taagctaaag aactaaaaat tagagttttc c
//
LOCUS       XM_032653418            3137 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate-binding protein 1-like
            (LOC116764638), transcript variant X2, mRNA.
ACCESSION   XM_032653418
VERSION     XM_032653418.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3137
                     /gene="LOC116764638"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764638"
     CDS             135..2066
                     /gene="LOC116764638"
                     /codon_start=1
                     /product="guanylate-binding protein 1-like isoform X1"
                     /protein_id="XP_032509309.1"
                     /db_xref="GeneID:116764638"
                     /translation="MASETHMSGPECLIENTNGRLLVNPKALKILSAIQQPVVVVAIV
                     GLYRTGKSYLMNKLAGENKGFSLGSTVQSHTKGIWMWCVPHPKKPERTLVLLDTEGLG
                     DVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQAMDQLHYVTELTDRIRAKASPDV
                     DGVEDSADFVSFFPDFVWTLRDFSLDLEADGQSITADEYLENSLKLKKGTSQKDKNFN
                     LPRLCIRKFFPKKKCFIFDRPTDRKKLGQLEELCDDKLDPEFVQQAAVFCSYIFRNSK
                     TKTLSGGIKVNGPRLETLVQTYVSAINSGDLPCMENAVLALSEIENTAAVKKAIAHYD
                     QQMDQKLQLPTETLQELLDLHRTIEKEAIEVFMRMSWKDIDHLFQKELAPPPLWSSGF
                     GRAGSAAMAHGPSCSVECGIFPHWGTNPCPLHRQADSQPLCHQAQLDEKRDDFCKKNR
                     KASSDRCSALLKDIFSPLEEGVKEGIYSKPGGYRLFIEKIQELKKKYLQEPRKGIQAE
                     EILQEYLKSKESVTAAILQTDQTLSEKDRLIEVERVKAESAQAAAKMLEEMQIKNQQM
                     MEQKEKSYQEHVKQLTEKMERDRAQLLEEQERTLSLKLQEQRRLLQEGFQEENRRLHE
                     EIQNLQKKMKKPRKQCCLS"
     misc_feature    186..974
                     /gene="LOC116764638"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    978..2024
                     /gene="LOC116764638"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 tgtctggtct ctacaggaaa tcaggcaagt cccatgacat tgggtgagtg aaataaaagt
       61 ctaaccatct agtgagagac agagaagtta cagaaccact ccacctaaac tgagaagaaa
      121 acagacaagg gaacatggcc tcagagaccc acatgtcagg cccagagtgc ctcatcgaga
      181 acactaatgg gcgactgttg gttaatccga aagctctgaa gatcctgtct gccattcagc
      241 agcccgttgt ggtggtggct atcgtgggcc tctaccgcac cggtaaatcc tacctgatga
      301 acaagctggc tggggagaac aagggttttt ctctgggctc cacggtgcag tctcacacga
      361 agggcatctg gatgtggtgt gtgcctcatc ccaagaagcc agaacgtact ctagttctgc
      421 ttgatactga gggcctgggg gatgtggaga agggtgacaa ccagaatgac tcctggatat
      481 ttgccctagc aatactcctg agcagcactt ttgtgtacaa tagtatggga accatcaacc
      541 agcaggccat ggaccaactt cactatgtga cggagctcac agatagaatc agggcaaaag
      601 cttcacctga tgtggatggg gttgaggatt cagctgactt tgtgagcttc tttccagact
      661 ttgtatggac actgagggat ttctccctag acttggaggc agatggacaa tccatcacag
      721 cagacgagta cctggagaat tcactcaagc ttaagaaagg taccagtcaa aaagataaaa
      781 attttaatct gcctcgactc tgtatccgga agttcttccc aaagaagaaa tgctttatct
      841 tcgatcggcc cactgatagg aagaaactgg gccagcttga ggaactgtgt gatgataagc
      901 tggaccccga atttgtgcaa caagctgcag tcttctgttc ctacatcttt agaaattcca
      961 aaactaaaac cctttcagga ggcatcaagg tcaatggacc tcgtctagaa accctggtgc
     1021 agacctatgt cagtgccatc aatagtgggg atctgccctg catggagaat gcagtcctgg
     1081 ccttgtctga gatcgagaac acagctgcag tgaaaaaggc cattgcccac tatgaccagc
     1141 agatggatca gaagctgcag ctgcccacgg aaaccctcca ggagctgctg gacctgcaca
     1201 ggactattga gaaggaggcc attgaagtct tcatgaggat gtcctggaaa gatatagacc
     1261 atttatttca aaaggaatta gcgcctcccc cattgtggag ctcaggcttc ggacgcgcag
     1321 gctcagcagc catggctcac gggcccagct gctccgtgga atgtgggatc ttcccgcact
     1381 ggggcacgaa cccgtgtccc ctgcatcggc aggcggactc tcaaccactg tgccaccagg
     1441 cccagctaga cgaaaagcga gatgactttt gtaaaaagaa tcgtaaagca tcatcagatc
     1501 gttgctcagc tttacttaag gatattttca gtcctctaga agaaggtgtg aaagagggga
     1561 tttattctaa accaggaggc tatcgcctct tcattgaaaa gatacaagag ctgaagaaaa
     1621 agtatcttca ggagcccagg aagggaatac aggctgaaga aattcttcag gaatacttga
     1681 agtccaagga gtctgtgact gctgcaattc tacagacaga ccagactctc tcagagaagg
     1741 acaggttgat tgaagtggaa cgtgtgaaag ctgaatctgc acaagctgca gcaaaaatgc
     1801 tggaggaaat gcaaataaag aatcagcaga tgatggaaca gaaagaaaag agttatcagg
     1861 aacatgtgaa acaactgact gagaagatgg agagggatag ggcccagttg ctggaagagc
     1921 aagagagaac tctctctctc aaacttcagg aacagcgccg actactacag gaaggattcc
     1981 aagaagagaa cagacgactt catgaagaaa tacagaatct ccagaagaag atgaaaaaac
     2041 caaggaagca atgttgccta agctaaagaa ctaaaaatta gagttttcct ggtcactctt
     2101 atcagaggca ttactcaagc agtttaaaat taagaaaaat gtcaccacac ttgataatat
     2161 ttagatttca cagttttatt atactaaata tttgcaaagg catgcagtac tataattgaa
     2221 atcatgtcca tcttcctcac aatactgtaa actgtgtaac aagatgcatt ttacctctgt
     2281 gccaacccag gaggtatcat aacctggtac cacccaggag cttcttcttc cagatgacta
     2341 cgagttagac aagtggacac tgagcaaagt cttaggttaa agtcttggga catagttggt
     2401 catgagtttg gccaagtgca ccacaagttc caatatcagg gacaaccatt ctagcttctt
     2461 agtgaagaca gtatacagtg tcccattgtt tcaagactgc acagtctgtc agcaatgatg
     2521 tgattcctgg acactgggaa tgggtaacac ttactggtga attccaagct aaagcaaatc
     2581 accttatata gtgatctaga agctctacag aatgtctgta ggaagatgga agaagccatt
     2641 agcatgagta tgagttggat cataaataaa tgggctaaag aaggaaattt tcccttcttg
     2701 ctcagttcac ccagattata actgtaatgg gaccctttag aactttaggt aagtgaccct
     2761 ggactaaaca tagtaacatg atgacaagta tacattgtgt gtttgtagta atttataatt
     2821 tgcaaagatg aacttgaaat gatgactgac aatatgttag aaaactgagc taaattaatt
     2881 attagatcat ttataaccct agagtttagg ctatcttttc ccacttctta agaagcatac
     2941 ttgaaagcct gcttattttc ccccaagaga atatgcgttg ttttttactt tttttgacca
     3001 gtaaaataat gctcttgata ttacttagta tagactttat cacaattgtc aaaagcccta
     3061 ggtatgtggt tgaagtttct taaagcaatt aagaattatt ttcaatctgg aaataaatta
     3121 tgcttcactg aacttta
//
LOCUS       XM_032653424            2981 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate-binding protein 1-like
            (LOC116764638), transcript variant X3, mRNA.
ACCESSION   XM_032653424
VERSION     XM_032653424.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2981
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2981
                     /gene="LOC116764638"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, 1 long SRA read, 40
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764638"
     CDS             142..1917
                     /gene="LOC116764638"
                     /codon_start=1
                     /product="guanylate-binding protein 1-like isoform X2"
                     /protein_id="XP_032509315.1"
                     /db_xref="GeneID:116764638"
                     /translation="MASETHMSGPECLIENTNGRLLVNPKALKILSAIQQPVVVVAIV
                     GLYRTGKSYLMNKLAGENKGFSLGSTVQSHTKGIWMWCVPHPKKPERTLVLLDTEGLG
                     DVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQAMDQLHYVTELTDRIRAKASPDV
                     DGVEDSADFVSFFPDFVWTLRDFSLDLEADGQSITADEYLENSLKLKKGTSQKDKNFN
                     LPRLCIRKFFPKKKCFIFDRPTDRKKLGQLEELCDDKLDPEFVQQAAVFCSYIFRNSK
                     TKTLSGGIKVNGPRLETLVQTYVSAINSGDLPCMENAVLALSEIENTAAVKKAIAHYD
                     QQMDQKLQLPTETLQELLDLHRTIEKEAIEVFMRMSWKDIDHLFQKELAAQLDEKRDD
                     FCKKNRKASSDRCSALLKDIFSPLEEGVKEGIYSKPGGYRLFIEKIQELKKKYLQEPR
                     KGIQAEEILQEYLKSKESVTAAILQTDQTLSEKDRLIEVERVKAESAQAAAKMLEEMQ
                     IKNQQMMEQKEKSYQEHVKQLTEKMERDRAQLLEEQERTLSLKLQEQRRLLQEGFQEE
                     NRRLHEEIQNLQKKMKKPRKQCCLS"
     misc_feature    193..981
                     /gene="LOC116764638"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    985..1875
                     /gene="LOC116764638"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 gcacttctgt ctggtctcta caggaaatca ggcaagtccc atgacattgg gtgagtgaaa
       61 taaaagtcta accatctagt gagagacaga gaagttacag aaccactcca cctaaactga
      121 gaagaaaaca gacaagggaa catggcctca gagacccaca tgtcaggccc agagtgcctc
      181 atcgagaaca ctaatgggcg actgttggtt aatccgaaag ctctgaagat cctgtctgcc
      241 attcagcagc ccgttgtggt ggtggctatc gtgggcctct accgcaccgg taaatcctac
      301 ctgatgaaca agctggctgg ggagaacaag ggtttttctc tgggctccac ggtgcagtct
      361 cacacgaagg gcatctggat gtggtgtgtg cctcatccca agaagccaga acgtactcta
      421 gttctgcttg atactgaggg cctgggggat gtggagaagg gtgacaacca gaatgactcc
      481 tggatatttg ccctagcaat actcctgagc agcacttttg tgtacaatag tatgggaacc
      541 atcaaccagc aggccatgga ccaacttcac tatgtgacgg agctcacaga tagaatcagg
      601 gcaaaagctt cacctgatgt ggatggggtt gaggattcag ctgactttgt gagcttcttt
      661 ccagactttg tatggacact gagggatttc tccctagact tggaggcaga tggacaatcc
      721 atcacagcag acgagtacct ggagaattca ctcaagctta agaaaggtac cagtcaaaaa
      781 gataaaaatt ttaatctgcc tcgactctgt atccggaagt tcttcccaaa gaagaaatgc
      841 tttatcttcg atcggcccac tgataggaag aaactgggcc agcttgagga actgtgtgat
      901 gataagctgg accccgaatt tgtgcaacaa gctgcagtct tctgttccta catctttaga
      961 aattccaaaa ctaaaaccct ttcaggaggc atcaaggtca atggacctcg tctagaaacc
     1021 ctggtgcaga cctatgtcag tgccatcaat agtggggatc tgccctgcat ggagaatgca
     1081 gtcctggcct tgtctgagat cgagaacaca gctgcagtga aaaaggccat tgcccactat
     1141 gaccagcaga tggatcagaa gctgcagctg cccacggaaa ccctccagga gctgctggac
     1201 ctgcacagga ctattgagaa ggaggccatt gaagtcttca tgaggatgtc ctggaaagat
     1261 atagaccatt tatttcaaaa ggaattagcg gcccagctag acgaaaagcg agatgacttt
     1321 tgtaaaaaga atcgtaaagc atcatcagat cgttgctcag ctttacttaa ggatattttc
     1381 agtcctctag aagaaggtgt gaaagagggg atttattcta aaccaggagg ctatcgcctc
     1441 ttcattgaaa agatacaaga gctgaagaaa aagtatcttc aggagcccag gaagggaata
     1501 caggctgaag aaattcttca ggaatacttg aagtccaagg agtctgtgac tgctgcaatt
     1561 ctacagacag accagactct ctcagagaag gacaggttga ttgaagtgga acgtgtgaaa
     1621 gctgaatctg cacaagctgc agcaaaaatg ctggaggaaa tgcaaataaa gaatcagcag
     1681 atgatggaac agaaagaaaa gagttatcag gaacatgtga aacaactgac tgagaagatg
     1741 gagagggata gggcccagtt gctggaagag caagagagaa ctctctctct caaacttcag
     1801 gaacagcgcc gactactaca ggaaggattc caagaagaga acagacgact tcatgaagaa
     1861 atacagaatc tccagaagaa gatgaaaaaa ccaaggaagc aatgttgcct aagctaaaga
     1921 actaaaaatt agagttttcc tggtcactct tatcagaggc attactcaag cagtttaaaa
     1981 ttaagaaaaa tgtcaccaca cttgataata tttagatttc acagttttat tatactaaat
     2041 atttgcaaag gcatgcagta ctataattga aatcatgtcc atcttcctca caatactgta
     2101 aactgtgtaa caagatgcat tttacctctg tgccaaccca ggaggtatca taacctggta
     2161 ccacccagga gcttcttctt ccagatgact acgagttaga caagtggaca ctgagcaaag
     2221 tcttaggtta aagtcttggg acatagttgg tcatgagttt ggccaagtgc accacaagtt
     2281 ccaatatcag ggacaaccat tctagcttct tagtgaagac agtatacagt gtcccattgt
     2341 ttcaagactg cacagtctgt cagcaatgat gtgattcctg gacactggga atgggtaaca
     2401 cttactggtg aattccaagc taaagcaaat caccttatat agtgatctag aagctctaca
     2461 gaatgtctgt aggaagatgg aagaagccat tagcatgagt atgagttgga tcataaataa
     2521 atgggctaaa gaaggaaatt ttcccttctt gctcagttca cccagattat aactgtaatg
     2581 ggacccttta gaactttagg taagtgaccc tggactaaac atagtaacat gatgacaagt
     2641 atacattgtg tgtttgtagt aatttataat ttgcaaagat gaacttgaaa tgatgactga
     2701 caatatgtta gaaaactgag ctaaattaat tattagatca tttataaccc tagagtttag
     2761 gctatctttt cccacttctt aagaagcata cttgaaagcc tgcttatttt cccccaagag
     2821 aatatgcgtt gttttttact ttttttgacc agtaaaataa tgctcttgat attacttagt
     2881 atagacttta tcacaattgt caaaagccct aggtatgtgg ttgaagtttc ttaaagcaat
     2941 taagaattat tttcaatctg gaaataaatt atgcttcact g
//
LOCUS       XM_032653432            1847 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate-binding protein 1-like
            (LOC116764638), transcript variant X4, mRNA.
ACCESSION   XM_032653432
VERSION     XM_032653432.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1847
                     /gene="LOC116764638"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 41 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764638"
     CDS             49..1824
                     /gene="LOC116764638"
                     /codon_start=1
                     /product="guanylate-binding protein 1-like isoform X2"
                     /protein_id="XP_032509323.1"
                     /db_xref="GeneID:116764638"
                     /translation="MASETHMSGPECLIENTNGRLLVNPKALKILSAIQQPVVVVAIV
                     GLYRTGKSYLMNKLAGENKGFSLGSTVQSHTKGIWMWCVPHPKKPERTLVLLDTEGLG
                     DVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQAMDQLHYVTELTDRIRAKASPDV
                     DGVEDSADFVSFFPDFVWTLRDFSLDLEADGQSITADEYLENSLKLKKGTSQKDKNFN
                     LPRLCIRKFFPKKKCFIFDRPTDRKKLGQLEELCDDKLDPEFVQQAAVFCSYIFRNSK
                     TKTLSGGIKVNGPRLETLVQTYVSAINSGDLPCMENAVLALSEIENTAAVKKAIAHYD
                     QQMDQKLQLPTETLQELLDLHRTIEKEAIEVFMRMSWKDIDHLFQKELAAQLDEKRDD
                     FCKKNRKASSDRCSALLKDIFSPLEEGVKEGIYSKPGGYRLFIEKIQELKKKYLQEPR
                     KGIQAEEILQEYLKSKESVTAAILQTDQTLSEKDRLIEVERVKAESAQAAAKMLEEMQ
                     IKNQQMMEQKEKSYQEHVKQLTEKMERDRAQLLEEQERTLSLKLQEQRRLLQEGFQEE
                     NRRLHEEIQNLQKKMKKPRKQCCLS"
     misc_feature    100..888
                     /gene="LOC116764638"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    892..1782
                     /gene="LOC116764638"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 accagaaatt ctaattcatc ccatctcttc ccctgcagac aagggaacat ggcctcagag
       61 acccacatgt caggcccaga gtgcctcatc gagaacacta atgggcgact gttggttaat
      121 ccgaaagctc tgaagatcct gtctgccatt cagcagcccg ttgtggtggt ggctatcgtg
      181 ggcctctacc gcaccggtaa atcctacctg atgaacaagc tggctgggga gaacaagggt
      241 ttttctctgg gctccacggt gcagtctcac acgaagggca tctggatgtg gtgtgtgcct
      301 catcccaaga agccagaacg tactctagtt ctgcttgata ctgagggcct gggggatgtg
      361 gagaagggtg acaaccagaa tgactcctgg atatttgccc tagcaatact cctgagcagc
      421 acttttgtgt acaatagtat gggaaccatc aaccagcagg ccatggacca acttcactat
      481 gtgacggagc tcacagatag aatcagggca aaagcttcac ctgatgtgga tggggttgag
      541 gattcagctg actttgtgag cttctttcca gactttgtat ggacactgag ggatttctcc
      601 ctagacttgg aggcagatgg acaatccatc acagcagacg agtacctgga gaattcactc
      661 aagcttaaga aaggtaccag tcaaaaagat aaaaatttta atctgcctcg actctgtatc
      721 cggaagttct tcccaaagaa gaaatgcttt atcttcgatc ggcccactga taggaagaaa
      781 ctgggccagc ttgaggaact gtgtgatgat aagctggacc ccgaatttgt gcaacaagct
      841 gcagtcttct gttcctacat ctttagaaat tccaaaacta aaaccctttc aggaggcatc
      901 aaggtcaatg gacctcgtct agaaaccctg gtgcagacct atgtcagtgc catcaatagt
      961 ggggatctgc cctgcatgga gaatgcagtc ctggccttgt ctgagatcga gaacacagct
     1021 gcagtgaaaa aggccattgc ccactatgac cagcagatgg atcagaagct gcagctgccc
     1081 acggaaaccc tccaggagct gctggacctg cacaggacta ttgagaagga ggccattgaa
     1141 gtcttcatga ggatgtcctg gaaagatata gaccatttat ttcaaaagga attagcggcc
     1201 cagctagacg aaaagcgaga tgacttttgt aaaaagaatc gtaaagcatc atcagatcgt
     1261 tgctcagctt tacttaagga tattttcagt cctctagaag aaggtgtgaa agaggggatt
     1321 tattctaaac caggaggcta tcgcctcttc attgaaaaga tacaagagct gaagaaaaag
     1381 tatcttcagg agcccaggaa gggaatacag gctgaagaaa ttcttcagga atacttgaag
     1441 tccaaggagt ctgtgactgc tgcaattcta cagacagacc agactctctc agagaaggac
     1501 aggttgattg aagtggaacg tgtgaaagct gaatctgcac aagctgcagc aaaaatgctg
     1561 gaggaaatgc aaataaagaa tcagcagatg atggaacaga aagaaaagag ttatcaggaa
     1621 catgtgaaac aactgactga gaagatggag agggataggg cccagttgct ggaagagcaa
     1681 gagagaactc tctctctcaa acttcaggaa cagcgccgac tactacagga aggattccaa
     1741 gaagagaaca gacgacttca tgaagaaata cagaatctcc agaagaagat gaaaaaacca
     1801 aggaagcaat gttgcctaag ctaaagaact aaaaattaga gttttcc
//
LOCUS       XM_032653446            3661 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate-binding protein 4-like
            (LOC116764652), transcript variant X1, mRNA.
ACCESSION   XM_032653446
VERSION     XM_032653446.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3661
                     /gene="LOC116764652"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 56 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764652"
     CDS             288..2189
                     /gene="LOC116764652"
                     /codon_start=1
                     /product="guanylate-binding protein 4-like"
                     /protein_id="XP_032509337.1"
                     /db_xref="GeneID:116764652"
                     /translation="MASGSTIMDPIRLVENQNNQLTVNPKALKILDQISQPVVVVAIV
                     GLYRTGKSFLMNRLAGQNHGFRLGSTVRSETKGIWMWCVPHPSKESHTLVLLDTEGLG
                     DVEKGDSKNDSWIFALAVLLSSILVYNSMNTINHQALEQLHYVTELTELIRITSSASS
                     DEVQNSAEFVSFFPDFVWAVRDFMLELELDGYPITEDEYLENALKLIPGKNPQIQNSN
                     MPRECIRKFFPKRKCFVFDRPTSDKTLLLHIEEVPDNQLDENFQKQSNHFCSYIFTHA
                     KPKTLRERITVTGAGLGTLVVAYIDAINSGGVPCLENAVITLAERENSAAVQKAADHY
                     SEQMAQRLRLPTDTLQELLEVHAACETEAIAIFLGRSFKDDKQTFQKKLVDIMEKKKD
                     VFMIQNEEASVKHCQAELKKLSESLMTSISGGTFFVPGGHSLYLEARSKFEQDYKLVP
                     RKGVKANEVLQSFLQSQAGVEEAILQADKAFTDVDKALAVECAKKHAAEREQQLLREK
                     QNEEEKKMAAQERSFEENMTQLEEKMNRERENLLGEQETMLNHKQKVQEELLTEGFKK
                     QAEELNKEIKKLKEAIEITKNIKSINVSEVLDVASMALVAVLPGNRKFFGLGVKFLSY
                     AMKRTENPY"
     misc_feature    339..1130
                     /gene="LOC116764652"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    1140..2024
                     /gene="LOC116764652"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 ataaacccaa cccataacgg aatggctttt gataatcggc tggcttttca gcttctaaat
       61 aagagtcggt ttccagagga gccagacgca ggaggaaccc caggggcgag ccggagcagc
      121 taacttgacc ccggccgcaa ccgcgccacg ggactatcac tgatgactcc ttccggtgga
      181 agattttccc cctggtgtct gtaattgaca attcttcctg taactgacct ccaggcagta
      241 gttctgcatg agacctcccc cttctggcct gctgactcca tcttcccatg gcgtctggat
      301 ccaccataat ggaccccatc cgtctggtgg aaaaccagaa caatcagctg acagtaaatc
      361 caaaagcact gaagattctt gaccagattt ctcagcctgt ggtggtggtg gccattgtag
      421 ggctgtatcg gacgggaaaa tccttcctga tgaaccgcct ggcagggcag aaccacggct
      481 tccgtctggg ctccacagtg aggtctgaaa ctaagggcat ctggatgtgg tgtgtgcccc
      541 acccctccaa ggagagccac accctggtcc ttctggacac cgagggcctg ggtgatgtgg
      601 aaaagggtga ctccaagaat gactcgtgga tctttgccct ggccgtgctt ctgagcagca
      661 tccttgtcta caacagcatg aacaccatca accaccaggc cctggagcag ctgcactacg
      721 tgactgaact aacagagcta atcaggataa catcttctgc cagctctgat gaagtacaaa
      781 actcagccga gtttgtgagt ttctttccag actttgtttg ggctgtacgg gatttcatgc
      841 tggagctgga gttagatgga taccccatca ctgaagatga gtacttggag aatgccttga
      901 agttgattcc aggcaagaat ccccaaatcc aaaattccaa catgcccaga gagtgtatca
      961 ggaagttttt tccaaaaaga aagtgctttg tctttgaccg gcctacaagt gacaaaacat
     1021 tattactcca tattgaggaa gtgccagata accaactgga tgagaatttc cagaagcaat
     1081 caaaccattt ctgctcatat atctttaccc atgcaaaacc caagacccta agagaaagaa
     1141 tcactgtcac aggggcaggg ttggggactc tggtggtggc ctacatagat gccatcaaca
     1201 gtggaggagt tccttgtttg gagaacgcag tgataactct ggccgagcgt gagaactcag
     1261 cggccgtgca gaaggcagcc gaccactaca gtgagcagat ggcccagcga ctgaggctcc
     1321 ccacggacac gctccaggag cttctggagg tgcacgcagc ctgtgagacg gaagccattg
     1381 caatcttctt ggggcgctcc ttcaaggatg acaagcagac attccagaag aagctggtgg
     1441 acatcatgga gaaaaagaag gacgttttca tgatccaaaa tgaagaggcc tctgtcaaac
     1501 attgtcaggc tgagcttaag aagctttcag aatccttgat gacaagtatt tcaggaggaa
     1561 ctttctttgt ccctggagga cacagtctct acttagaagc aaggagcaag tttgaacagg
     1621 actataaact ggttcccagg aaaggagtta aggcaaatga ggtcctccag agcttcctgc
     1681 agtcccaggc aggagtagag gaagccatcc tgcaggcaga caaagccttc actgatgtgg
     1741 acaaggcctt ggcagttgag tgtgccaaga agcatgcagc tgagagggaa cagcagctgc
     1801 taagagagaa acagaatgaa gaggagaaaa aaatggcggc acaagagaga agcttcgagg
     1861 aaaacatgac ccaactggaa gagaagatga atagggaaag agaaaacctt ctaggagagc
     1921 aggaaacaat gctgaaccac aagcagaagg tgcaagaaga actacttaca gaaggattta
     1981 aaaagcaagc tgaagagtta aataaagaga taaaaaaact aaaggaagcc attgaaataa
     2041 ctaaaaatat taagtccata aatgtttcag aggtccttga tgtggctagc atggcattag
     2101 ttgcagtact acctgggaat cgtaaatttt ttggtctggg agtgaaattt ctcagttatg
     2161 ctatgaaaag gactgagaat ccctattaag tatatcttga aaggcttctt atgttttaat
     2221 agtgtaacac tgtagttcat ttttaaaata tgttgtcatg acagttttgt tgaagaggag
     2281 tttaaaaata aaaactgatt accagagaat taccaaagtg attaccaggg cctgaaatgc
     2341 aaaaagaacg aacaattttg agaattagtt aagttaaaga aatggaaaac aagttggagg
     2401 atatgattaa ttatagaaaa gtgttaagaa gagcaaaaaa ccaaatggta agaggaagaa
     2461 cagtcgcaat ctatgataca gtcatggaga tcaattcatt aagttataag gagcccttat
     2521 aaatcagtga ggaaagagca acaaacaaaa tattttaaat gtgcgaaaat ataccaagag
     2581 aataaatgtg ttcaacttta ctgattataa atgatgtaca aggtaaaatt aggaggtacc
     2641 tgtgtcacct ctcagatggg ccaggaagta cagtttggac agggcaccag ctagcaagag
     2701 ttccaggaag ttggcagtct ctgatatttg ctagggagag tgcaaactga tgcaaatata
     2761 taccaaaaat ttaaatgcaa atactgctga tacagaagtc cacatttagg aatttatctt
     2821 acagatttat ttacccaagt tgaaaatggc ttgtgtagta gtatatttgt tgaaggattg
     2881 ttgtaattcc agaagattgg aaacaacttt caagtctctc tgtcacatac ttgtgaagta
     2941 aatcctgaga cacacttaca aaggaatact ctacagtcac tgaaatggaa agggaaactt
     3001 ttatttgtgc taacatgaga aaatctcaag gtgcagaaag tgtgtatagt tgtattacca
     3061 atttaaaaaa ataatgaggg ggcttccctg gtggtgcagt ggttgagagt ccatctgctg
     3121 atgcagggga catgggttcg tgccccagtc cgagaagatc ccacatgctg cggaacggct
     3181 gggcccgtga gccatggccg ctgagcctgc gcatccggag cctgtgctcc gcaacgggag
     3241 aagccacaac agtgagaggc ctgcgtacca aaaaataaaa ataaataata ataataataa
     3301 tgagtatatg catatattat catctatctt tggaaaatac aaaagaaatt ggtatccatg
     3361 aacataacag gaatggacct gcatatttga ggtaagacat gagaggataa ctaactttgc
     3421 atgacacatt cttctgtgcc ttttatattt tctacgaatt cttgcttatt gaaacataaa
     3481 taaatacagt tattaaaatc agaaataata atacatggaa tgcaaaagtg cccatgacag
     3541 gatgaaagtt ttttttttta catttatttt attatttatt tattttgcct gcaccaggtc
     3601 ttagttgcag catgcaggat atttatttat ttatttattt ttggctgcat tgggtcttcg
     3661 t
//
LOCUS       XM_032653452            3521 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate-binding protein 4-like
            (LOC116764652), transcript variant X2, mRNA.
ACCESSION   XM_032653452
VERSION     XM_032653452.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3521
                     /gene="LOC116764652"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 55 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764652"
     CDS             148..2049
                     /gene="LOC116764652"
                     /codon_start=1
                     /product="guanylate-binding protein 4-like"
                     /protein_id="XP_032509343.1"
                     /db_xref="GeneID:116764652"
                     /translation="MASGSTIMDPIRLVENQNNQLTVNPKALKILDQISQPVVVVAIV
                     GLYRTGKSFLMNRLAGQNHGFRLGSTVRSETKGIWMWCVPHPSKESHTLVLLDTEGLG
                     DVEKGDSKNDSWIFALAVLLSSILVYNSMNTINHQALEQLHYVTELTELIRITSSASS
                     DEVQNSAEFVSFFPDFVWAVRDFMLELELDGYPITEDEYLENALKLIPGKNPQIQNSN
                     MPRECIRKFFPKRKCFVFDRPTSDKTLLLHIEEVPDNQLDENFQKQSNHFCSYIFTHA
                     KPKTLRERITVTGAGLGTLVVAYIDAINSGGVPCLENAVITLAERENSAAVQKAADHY
                     SEQMAQRLRLPTDTLQELLEVHAACETEAIAIFLGRSFKDDKQTFQKKLVDIMEKKKD
                     VFMIQNEEASVKHCQAELKKLSESLMTSISGGTFFVPGGHSLYLEARSKFEQDYKLVP
                     RKGVKANEVLQSFLQSQAGVEEAILQADKAFTDVDKALAVECAKKHAAEREQQLLREK
                     QNEEEKKMAAQERSFEENMTQLEEKMNRERENLLGEQETMLNHKQKVQEELLTEGFKK
                     QAEELNKEIKKLKEAIEITKNIKSINVSEVLDVASMALVAVLPGNRKFFGLGVKFLSY
                     AMKRTENPY"
     misc_feature    199..990
                     /gene="LOC116764652"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    1000..1884
                     /gene="LOC116764652"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 aacccataac ggaatggctt ttgataatcg gctggctttt cagcttctaa ataagagtcg
       61 gtttccagag gagccagacg caggaggaac cccaggggcg agccggagca gctaacttga
      121 ccccggccgc aaccgcgcca ccttcccatg gcgtctggat ccaccataat ggaccccatc
      181 cgtctggtgg aaaaccagaa caatcagctg acagtaaatc caaaagcact gaagattctt
      241 gaccagattt ctcagcctgt ggtggtggtg gccattgtag ggctgtatcg gacgggaaaa
      301 tccttcctga tgaaccgcct ggcagggcag aaccacggct tccgtctggg ctccacagtg
      361 aggtctgaaa ctaagggcat ctggatgtgg tgtgtgcccc acccctccaa ggagagccac
      421 accctggtcc ttctggacac cgagggcctg ggtgatgtgg aaaagggtga ctccaagaat
      481 gactcgtgga tctttgccct ggccgtgctt ctgagcagca tccttgtcta caacagcatg
      541 aacaccatca accaccaggc cctggagcag ctgcactacg tgactgaact aacagagcta
      601 atcaggataa catcttctgc cagctctgat gaagtacaaa actcagccga gtttgtgagt
      661 ttctttccag actttgtttg ggctgtacgg gatttcatgc tggagctgga gttagatgga
      721 taccccatca ctgaagatga gtacttggag aatgccttga agttgattcc aggcaagaat
      781 ccccaaatcc aaaattccaa catgcccaga gagtgtatca ggaagttttt tccaaaaaga
      841 aagtgctttg tctttgaccg gcctacaagt gacaaaacat tattactcca tattgaggaa
      901 gtgccagata accaactgga tgagaatttc cagaagcaat caaaccattt ctgctcatat
      961 atctttaccc atgcaaaacc caagacccta agagaaagaa tcactgtcac aggggcaggg
     1021 ttggggactc tggtggtggc ctacatagat gccatcaaca gtggaggagt tccttgtttg
     1081 gagaacgcag tgataactct ggccgagcgt gagaactcag cggccgtgca gaaggcagcc
     1141 gaccactaca gtgagcagat ggcccagcga ctgaggctcc ccacggacac gctccaggag
     1201 cttctggagg tgcacgcagc ctgtgagacg gaagccattg caatcttctt ggggcgctcc
     1261 ttcaaggatg acaagcagac attccagaag aagctggtgg acatcatgga gaaaaagaag
     1321 gacgttttca tgatccaaaa tgaagaggcc tctgtcaaac attgtcaggc tgagcttaag
     1381 aagctttcag aatccttgat gacaagtatt tcaggaggaa ctttctttgt ccctggagga
     1441 cacagtctct acttagaagc aaggagcaag tttgaacagg actataaact ggttcccagg
     1501 aaaggagtta aggcaaatga ggtcctccag agcttcctgc agtcccaggc aggagtagag
     1561 gaagccatcc tgcaggcaga caaagccttc actgatgtgg acaaggcctt ggcagttgag
     1621 tgtgccaaga agcatgcagc tgagagggaa cagcagctgc taagagagaa acagaatgaa
     1681 gaggagaaaa aaatggcggc acaagagaga agcttcgagg aaaacatgac ccaactggaa
     1741 gagaagatga atagggaaag agaaaacctt ctaggagagc aggaaacaat gctgaaccac
     1801 aagcagaagg tgcaagaaga actacttaca gaaggattta aaaagcaagc tgaagagtta
     1861 aataaagaga taaaaaaact aaaggaagcc attgaaataa ctaaaaatat taagtccata
     1921 aatgtttcag aggtccttga tgtggctagc atggcattag ttgcagtact acctgggaat
     1981 cgtaaatttt ttggtctggg agtgaaattt ctcagttatg ctatgaaaag gactgagaat
     2041 ccctattaag tatatcttga aaggcttctt atgttttaat agtgtaacac tgtagttcat
     2101 ttttaaaata tgttgtcatg acagttttgt tgaagaggag tttaaaaata aaaactgatt
     2161 accagagaat taccaaagtg attaccaggg cctgaaatgc aaaaagaacg aacaattttg
     2221 agaattagtt aagttaaaga aatggaaaac aagttggagg atatgattaa ttatagaaaa
     2281 gtgttaagaa gagcaaaaaa ccaaatggta agaggaagaa cagtcgcaat ctatgataca
     2341 gtcatggaga tcaattcatt aagttataag gagcccttat aaatcagtga ggaaagagca
     2401 acaaacaaaa tattttaaat gtgcgaaaat ataccaagag aataaatgtg ttcaacttta
     2461 ctgattataa atgatgtaca aggtaaaatt aggaggtacc tgtgtcacct ctcagatggg
     2521 ccaggaagta cagtttggac agggcaccag ctagcaagag ttccaggaag ttggcagtct
     2581 ctgatatttg ctagggagag tgcaaactga tgcaaatata taccaaaaat ttaaatgcaa
     2641 atactgctga tacagaagtc cacatttagg aatttatctt acagatttat ttacccaagt
     2701 tgaaaatggc ttgtgtagta gtatatttgt tgaaggattg ttgtaattcc agaagattgg
     2761 aaacaacttt caagtctctc tgtcacatac ttgtgaagta aatcctgaga cacacttaca
     2821 aaggaatact ctacagtcac tgaaatggaa agggaaactt ttatttgtgc taacatgaga
     2881 aaatctcaag gtgcagaaag tgtgtatagt tgtattacca atttaaaaaa ataatgaggg
     2941 ggcttccctg gtggtgcagt ggttgagagt ccatctgctg atgcagggga catgggttcg
     3001 tgccccagtc cgagaagatc ccacatgctg cggaacggct gggcccgtga gccatggccg
     3061 ctgagcctgc gcatccggag cctgtgctcc gcaacgggag aagccacaac agtgagaggc
     3121 ctgcgtacca aaaaataaaa ataaataata ataataataa tgagtatatg catatattat
     3181 catctatctt tggaaaatac aaaagaaatt ggtatccatg aacataacag gaatggacct
     3241 gcatatttga ggtaagacat gagaggataa ctaactttgc atgacacatt cttctgtgcc
     3301 ttttatattt tctacgaatt cttgcttatt gaaacataaa taaatacagt tattaaaatc
     3361 agaaataata atacatggaa tgcaaaagtg cccatgacag gatgaaagtt ttttttttta
     3421 catttatttt attatttatt tattttgcct gcaccaggtc ttagttgcag catgcaggat
     3481 atttatttat ttatttattt ttggctgcat tgggtcttcg t
//
LOCUS       XM_032653466            3875 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate binding protein 5 (GBP5),
            transcript variant X1, mRNA.
ACCESSION   XM_032653466
VERSION     XM_032653466.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3875
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3875
                     /gene="GBP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 43 Proteins, and
                     91% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764663"
     CDS             479..2236
                     /gene="GBP5"
                     /codon_start=1
                     /product="guanylate-binding protein 5"
                     /protein_id="XP_032509357.1"
                     /db_xref="GeneID:116764663"
                     /translation="MAPVVHMPEPLCLIENTNGQLLVNPKALKILSAIQQPVVVVAIV
                     GLYRTGKSYLMNKLAGKNKGFCVGSTVQTHTKGIWMWCVPHPEKPNHILVLLDTEGLG
                     DIEKDDKKSDTQIFVLALLLSSTFVYNTMNTIDQRAIDLLHYVTELSNLLRTVTSPDL
                     DGVDNAPDFMNVCPDLVWTVRDFYLDLEANGRLITADEYLENSLRPKQGTDRHLQNFN
                     LPRLCIQKFFPIKKCFIFDLPTHRKKLAQLETLHNDDLDPEFVQQVADFCSYIFSHSK
                     TKTLSGGIKVNGSHLESLVRTCVSAINSGDLPCMENVLALAQIKNSSAVQKAIDHYDQ
                     QMGQKLQLPTETLQELLDLHRVSEKGAMEVFMKNSFEDIDQGFQETLEILLEAKQNDF
                     CKRNLEASLNRCSALLQDIFRPLEEDVKQGIYSKPGGHRLFLQKREELKAKYYQAPRK
                     GIQAEKALQKYLQSKESVSVTIWQTDLVLTAREKEMEEARVKAEFMKAEEKRLGAILM
                     QHQQRMEQRERLHREQVRQMEIKRLYQQALQQRDQERRLKEEAEKLKERFQAESRKLQ
                     DEIQHPQRNDSPDDTCILL"
     misc_feature    530..1318
                     /gene="GBP5"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    1322..2191
                     /gene="GBP5"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 attctcagtt atattaatag aaaatggagt atcgaatttt gtcctgaagt tgactcagaa
       61 atttcacacc cacagaagag gtggagccta tgactcagga gatcttggat gcggtggaag
      121 cacctcccat tttggtgccc cggactgcga cgccagggac acgagcagta gcaaggccct
      181 aacaacccta gagacacaag caaggacaag aaggcaccaa agtacacctc tgacagaggc
      241 agtggagggt ggaaagtgcc aactctctaa tataaccaac cagagtcacg cagagtggag
      301 tggaaagaaa agaaatctcc aggactggat aagaaaaaag tatatcagaa accaacacag
      361 ctaacctgag ggacagattt agaactcttg ccaatttctc attgaagcac ctttgttacc
      421 agctctaaaa gatctctgct gctgatttca ccgttaaggt caggtgaccc ccctgaacat
      481 ggccccagtg gttcacatgc cagaaccctt gtgcctcatc gagaacacta atgggcaact
      541 gttggttaat ccgaaagctc tgaagatcct gtctgccatt cagcagcccg ttgtggtggt
      601 ggctatcgtg ggcctctacc gcaccggtaa atcctacctg atgaacaagc tggctgggaa
      661 gaacaagggt ttctgtgttg gatccacggt gcagactcac accaagggca tctggatgtg
      721 gtgtgtgcct caccctgaga agcctaacca catcctggtt cttcttgaca cggagggact
      781 tggagacata gagaaggatg acaagaagag tgacacccag atatttgtac tggcactact
      841 actgagtagt acctttgtat ataatactat gaacacaatt gaccagaggg ctatcgacct
      901 cctgcactat gtgacagaac tgtcaaatct gctcagaaca gttacctcac ctgatcttga
      961 tggggtagac aatgcacctg actttatgaa cgtctgtcca gacttagtgt ggactgtgag
     1021 agatttctac cttgacctgg aagcaaatgg gcgactcatc acagcagatg agtacctgga
     1081 gaattcattg aggccaaagc aaggcaccga tcgacatctt caaaatttta atttgccccg
     1141 tctgtgtata cagaaattct ttccaataaa gaaatgcttt atttttgact tgcccactca
     1201 tcggaaaaag cttgcccagc ttgagacact gcataatgat gacctggatc ctgaatttgt
     1261 acaacaagtg gcagatttct gttcctacat cttcagccat tccaagacta aaactctttc
     1321 aggaggcatc aaggtcaatg gatctcatct agagagcctg gtacggacct gtgtcagcgc
     1381 catcaacagt ggggatctgc cctgcatgga gaacgttctg gccttggccc agattaagaa
     1441 ctcatccgca gtgcaaaagg ccattgacca ctatgaccag cagatgggcc agaagctgca
     1501 gctgcccacg gaaaccctcc aggagctgct ggacctgcac agggtcagtg agaaaggggc
     1561 tatggaagtc ttcatgaaga actctttcga ggatatagac caaggattcc aggaaacatt
     1621 agagatcctg ctagaagcca aacagaatga cttttgtaaa cggaatttgg aggcatcact
     1681 gaatcgctgt tcagctttac ttcaggatat ttttcgtcct ctagaagaag atgtgaagca
     1741 agggatttat tcaaaacctg gggggcatcg tctcttcctt cagaagagag aagagctgaa
     1801 ggcaaagtac tatcaggcgc ccaggaaagg aatacaggct gagaaagctc tgcagaaata
     1861 tttacagtcc aaggagtctg tgagtgttac catttggcag acagatctgg ttctcacagc
     1921 gagggaaaag gagatggaag aggcacgtgt gaaagcagag tttatgaagg ctgaagaaaa
     1981 gaggttgggg gcaattctaa tgcagcacca gcaaaggatg gagcagaggg agagactcca
     2041 tcgggaacaa gtgagacaaa tggagataaa aagattgtac cagcaggccc tgcaacagag
     2101 ggaccaagaa cgtcggctca aggaggaggc tgaaaagctc aaggagagat tccaagctga
     2161 gagcagaaaa cttcaggatg agatccagca tccccagagg aatgactcac cagatgatac
     2221 atgtatctta ctctaaagaa ctaaacacta gaacttcatt ttcttgttca ctttcactga
     2281 agacacaaag gaacaagaaa ctatagaact tgagacaatc accatttaaa taaacttcat
     2341 aataattata ctgagctttt gtattgagtt ataaggttac gatgctcata attggtaaaa
     2401 cgtgcatttc actaatttca atagtttaaa tgttgtttgc ttccttaaag agattatgac
     2461 ttgtattata agggacatat taacattgcc gctattggca gtggtattgg gcaggatcta
     2521 taaagggaga ctttctcttg tacaccaata ccacccctct aattttccat atttgtctca
     2581 gtggggattg gaagagacct gggagggtgt ttctacaata aactaagtca catggaattt
     2641 gcccagtgac ttggactcag gtgggcatca ctcctgccaa gtggttttgt gctggatgcc
     2701 atcagggaga ggcactgatg ataaaacaca cgcaaaaaaa ctaaccaaac ttcgtagtgg
     2761 agacgtgtgt ggttctcaac tgggtggagg ctgctcagtc tatgggcaat tatatgactc
     2821 ctggtcatgg tcagtagaca gtctgcttag actattctaa gctgtaagca aataacatca
     2881 taatgaaata gaggtgctct agaagatgga aggaactacc agcatggaaa ttgtgtcata
     2941 ggctgaagag ctaaagaagc ctaaccttcc tgttatcctc accaagggca taacttaaat
     3001 aggacattat atattatgaa gcaatttata ttggacttgg tgattgtgta tcacatcttt
     3061 ataatccttt aagtctgtaa ataaatggta taaggcaggg gttcccaatg cctgggccat
     3121 ggacaagtac cagtccatgg cctgttagga accaggtcgc acagcaggag gtgagcagct
     3181 agcaagcgag caaagtttca tctgtattta cagccactcc ccatcgctcg atattaccac
     3241 ctgagctccg cctcctgtca gatcagcggt ggcattagat tctcatagga gcgcgaaccc
     3301 tcttgtgaac tgtgcatgcg agggatctag gttgcacgct ccttgtgaga atctaatgcc
     3361 tgatgatctg agggggagct gaggcggtga tgctagtgct ggggagcggc ggcaaatacc
     3421 gattatcatt agcagagagg tttgactgca cagagaccat aataaatcaa ttgcttgcag
     3481 acatatcgaa accctatcag tgagtggcag gtgaaaacaa gctcagggct cccaccgatt
     3541 ctgcattatg gtgagttgta taattatttc attatatact acaatgtaat aataatagaa
     3601 ataactacac aataaatgta atgcgtttga atcatcctga aaccatcccc cctcccccag
     3661 tccatggaaa aattgtcttc catgaaacct gtccctgatg ccaaaaaggt tggggactgc
     3721 tggtgtaagg tatgcaagat aatgttccaa aagatctcat gggacttatt taattttatg
     3781 cttgcttgta gtactaaaat taaatgattt taattctttg caatcatata tgaaagccta
     3841 ctgattttta ttaaaaacta tggattctgt aaata
//
LOCUS       XM_032653474            3655 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate binding protein 5 (GBP5),
            transcript variant X2, mRNA.
ACCESSION   XM_032653474
VERSION     XM_032653474.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3655
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3655
                     /gene="GBP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 40 Proteins, and
                     88% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764663"
     CDS             259..2016
                     /gene="GBP5"
                     /codon_start=1
                     /product="guanylate-binding protein 5"
                     /protein_id="XP_032509365.1"
                     /db_xref="GeneID:116764663"
                     /translation="MAPVVHMPEPLCLIENTNGQLLVNPKALKILSAIQQPVVVVAIV
                     GLYRTGKSYLMNKLAGKNKGFCVGSTVQTHTKGIWMWCVPHPEKPNHILVLLDTEGLG
                     DIEKDDKKSDTQIFVLALLLSSTFVYNTMNTIDQRAIDLLHYVTELSNLLRTVTSPDL
                     DGVDNAPDFMNVCPDLVWTVRDFYLDLEANGRLITADEYLENSLRPKQGTDRHLQNFN
                     LPRLCIQKFFPIKKCFIFDLPTHRKKLAQLETLHNDDLDPEFVQQVADFCSYIFSHSK
                     TKTLSGGIKVNGSHLESLVRTCVSAINSGDLPCMENVLALAQIKNSSAVQKAIDHYDQ
                     QMGQKLQLPTETLQELLDLHRVSEKGAMEVFMKNSFEDIDQGFQETLEILLEAKQNDF
                     CKRNLEASLNRCSALLQDIFRPLEEDVKQGIYSKPGGHRLFLQKREELKAKYYQAPRK
                     GIQAEKALQKYLQSKESVSVTIWQTDLVLTAREKEMEEARVKAEFMKAEEKRLGAILM
                     QHQQRMEQRERLHREQVRQMEIKRLYQQALQQRDQERRLKEEAEKLKERFQAESRKLQ
                     DEIQHPQRNDSPDDTCILL"
     misc_feature    310..1098
                     /gene="GBP5"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    1102..1971
                     /gene="GBP5"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 cagttatatt aatagaaaat ggagtatcga attttgtcct gaagttgact cagaaatttc
       61 acacccacag aagagtggag tggaaagaaa agaaatctcc aggactggat aagaaaaaag
      121 tatatcagaa accaacacag ctaacctgag ggacagattt agaactcttg ccaatttctc
      181 attgaagcac ctttgttacc agctctaaaa gatctctgct gctgatttca ccgttaaggt
      241 caggtgaccc ccctgaacat ggccccagtg gttcacatgc cagaaccctt gtgcctcatc
      301 gagaacacta atgggcaact gttggttaat ccgaaagctc tgaagatcct gtctgccatt
      361 cagcagcccg ttgtggtggt ggctatcgtg ggcctctacc gcaccggtaa atcctacctg
      421 atgaacaagc tggctgggaa gaacaagggt ttctgtgttg gatccacggt gcagactcac
      481 accaagggca tctggatgtg gtgtgtgcct caccctgaga agcctaacca catcctggtt
      541 cttcttgaca cggagggact tggagacata gagaaggatg acaagaagag tgacacccag
      601 atatttgtac tggcactact actgagtagt acctttgtat ataatactat gaacacaatt
      661 gaccagaggg ctatcgacct cctgcactat gtgacagaac tgtcaaatct gctcagaaca
      721 gttacctcac ctgatcttga tggggtagac aatgcacctg actttatgaa cgtctgtcca
      781 gacttagtgt ggactgtgag agatttctac cttgacctgg aagcaaatgg gcgactcatc
      841 acagcagatg agtacctgga gaattcattg aggccaaagc aaggcaccga tcgacatctt
      901 caaaatttta atttgccccg tctgtgtata cagaaattct ttccaataaa gaaatgcttt
      961 atttttgact tgcccactca tcggaaaaag cttgcccagc ttgagacact gcataatgat
     1021 gacctggatc ctgaatttgt acaacaagtg gcagatttct gttcctacat cttcagccat
     1081 tccaagacta aaactctttc aggaggcatc aaggtcaatg gatctcatct agagagcctg
     1141 gtacggacct gtgtcagcgc catcaacagt ggggatctgc cctgcatgga gaacgttctg
     1201 gccttggccc agattaagaa ctcatccgca gtgcaaaagg ccattgacca ctatgaccag
     1261 cagatgggcc agaagctgca gctgcccacg gaaaccctcc aggagctgct ggacctgcac
     1321 agggtcagtg agaaaggggc tatggaagtc ttcatgaaga actctttcga ggatatagac
     1381 caaggattcc aggaaacatt agagatcctg ctagaagcca aacagaatga cttttgtaaa
     1441 cggaatttgg aggcatcact gaatcgctgt tcagctttac ttcaggatat ttttcgtcct
     1501 ctagaagaag atgtgaagca agggatttat tcaaaacctg gggggcatcg tctcttcctt
     1561 cagaagagag aagagctgaa ggcaaagtac tatcaggcgc ccaggaaagg aatacaggct
     1621 gagaaagctc tgcagaaata tttacagtcc aaggagtctg tgagtgttac catttggcag
     1681 acagatctgg ttctcacagc gagggaaaag gagatggaag aggcacgtgt gaaagcagag
     1741 tttatgaagg ctgaagaaaa gaggttgggg gcaattctaa tgcagcacca gcaaaggatg
     1801 gagcagaggg agagactcca tcgggaacaa gtgagacaaa tggagataaa aagattgtac
     1861 cagcaggccc tgcaacagag ggaccaagaa cgtcggctca aggaggaggc tgaaaagctc
     1921 aaggagagat tccaagctga gagcagaaaa cttcaggatg agatccagca tccccagagg
     1981 aatgactcac cagatgatac atgtatctta ctctaaagaa ctaaacacta gaacttcatt
     2041 ttcttgttca ctttcactga agacacaaag gaacaagaaa ctatagaact tgagacaatc
     2101 accatttaaa taaacttcat aataattata ctgagctttt gtattgagtt ataaggttac
     2161 gatgctcata attggtaaaa cgtgcatttc actaatttca atagtttaaa tgttgtttgc
     2221 ttccttaaag agattatgac ttgtattata agggacatat taacattgcc gctattggca
     2281 gtggtattgg gcaggatcta taaagggaga ctttctcttg tacaccaata ccacccctct
     2341 aattttccat atttgtctca gtggggattg gaagagacct gggagggtgt ttctacaata
     2401 aactaagtca catggaattt gcccagtgac ttggactcag gtgggcatca ctcctgccaa
     2461 gtggttttgt gctggatgcc atcagggaga ggcactgatg ataaaacaca cgcaaaaaaa
     2521 ctaaccaaac ttcgtagtgg agacgtgtgt ggttctcaac tgggtggagg ctgctcagtc
     2581 tatgggcaat tatatgactc ctggtcatgg tcagtagaca gtctgcttag actattctaa
     2641 gctgtaagca aataacatca taatgaaata gaggtgctct agaagatgga aggaactacc
     2701 agcatggaaa ttgtgtcata ggctgaagag ctaaagaagc ctaaccttcc tgttatcctc
     2761 accaagggca taacttaaat aggacattat atattatgaa gcaatttata ttggacttgg
     2821 tgattgtgta tcacatcttt ataatccttt aagtctgtaa ataaatggta taaggcaggg
     2881 gttcccaatg cctgggccat ggacaagtac cagtccatgg cctgttagga accaggtcgc
     2941 acagcaggag gtgagcagct agcaagcgag caaagtttca tctgtattta cagccactcc
     3001 ccatcgctcg atattaccac ctgagctccg cctcctgtca gatcagcggt ggcattagat
     3061 tctcatagga gcgcgaaccc tcttgtgaac tgtgcatgcg agggatctag gttgcacgct
     3121 ccttgtgaga atctaatgcc tgatgatctg agggggagct gaggcggtga tgctagtgct
     3181 ggggagcggc ggcaaatacc gattatcatt agcagagagg tttgactgca cagagaccat
     3241 aataaatcaa ttgcttgcag acatatcgaa accctatcag tgagtggcag gtgaaaacaa
     3301 gctcagggct cccaccgatt ctgcattatg gtgagttgta taattatttc attatatact
     3361 acaatgtaat aataatagaa ataactacac aataaatgta atgcgtttga atcatcctga
     3421 aaccatcccc cctcccccag tccatggaaa aattgtcttc catgaaacct gtccctgatg
     3481 ccaaaaaggt tggggactgc tggtgtaagg tatgcaagat aatgttccaa aagatctcat
     3541 gggacttatt taattttatg cttgcttgta gtactaaaat taaatgattt taattctttg
     3601 caatcatata tgaaagccta ctgattttta ttaaaaacta tggattctgt aaata
//
LOCUS       XR_004352977            4733 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764678
            (LOC116764678), ncRNA.
ACCESSION   XR_004352977
VERSION     XR_004352977.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4733
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4733
                     /gene="LOC116764678"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764678"
     ncRNA           1..4733
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764678"
                     /product="uncharacterized LOC116764678"
                     /db_xref="GeneID:116764678"
ORIGIN      
        1 cggaggatta cagtatgaaa caaaaacaaa gtggaagggg gtttttgaaa tgttgctgca
       61 ggaaactgaa accccgtcca aactgaaacc acaagccaat ctgaaaccac aagccaaatt
      121 gtacacggaa gagaactttg aaatcatttg catttttttc tactccaaac tgtcctcggg
      181 gctatgagaa accataataa gtctacagta acagtgaata taaccccaag tccacctgga
      241 attgattttt tttgaatgcc atctggtatt gagcagtgca cctcctggat gttcacctgg
      301 cttaaaagga gaaatgatca gacatagatt atatactgat tcatggccta atggacaatg
      361 gtttgcctgg atgatcaggg acttaaaagg aacatgattg gaaaattgat gggaaagaat
      421 ttggagaaaa tgtatgtcta ctgttctctc tgaaagggta aaaaacatga agatatttgc
      481 atcctatgtg aattgtcacc taagtgtgac cctcagcaga gaaggatttt ggtaatcaag
      541 agggagggtg gcagggatgg aggtcataca tgggctcaac aacatggatt tctgctcacc
      601 aaggctgctc tggctaacac cactgctgag tatctagcca gtagcagaga tcaacaccaa
      661 ccactgacat ggcccatgat ggtgccttct ctacatgtaa tgcttttgtc aagattacta
      721 tccgtggact tacagcatgc cttatccacc accctggcat tccacacagc attgcttctg
      781 atcaaggaac tcacttcaca gcaaatgaac tgtgacaata ggcccatgct cattgaattc
      841 attgatctta ctgttcccca ccatcttgaa gcagctggct tgatagaact gtgaaataac
      901 ccttttaaaa ctcaattaca gtgccagcta ggtgtccaca aaccttgcaa ggctggggca
      961 ggtttcttca aaatactgta tatgctctga atcagtgtcc aatatatgtt gctgattctt
     1021 tgacagtcaa gattcttgag tccaggaatc aagggataga aataggagtg gcaccactca
     1081 ctattaccac tagggacccc ctaggaaaag ttttgcctcc tcttttcaca actctatgct
     1141 ctgctagttt agaggtctta attccagagg taggaatgct tctaccagga gacacaataa
     1201 agattccaat gaactagaag ttaagactgc catctggcca ctttggtgtc cttgtgcctc
     1261 tgaatcaaca ggcaaagaag ggagtgacag tgttggctgg aatgactgac cctgattacc
     1321 aaggggaaat tggactacta ctccataatg gaggtgggga agagtgtgtc tggaatatag
     1381 aggatcctta gggcatccct taatattacc atgcataatt gttagcgaaa gtggggtcca
     1441 gctgctctcc acttgaaagc caataaagag gcaaggttgg tggaaaggac agtttgcttt
     1501 attttggagg ccagcaactg gagagaggtg gactcgtgtc caaaggccaa ctccccccac
     1561 tgacagtcag tgggaaagag cttttaaagg gaagtttcag ggatgtatag gcaggaggag
     1621 ggggctacat gcagaagtag cacagtaaac tctgacagtc atcttgaaat tggttgtgca
     1681 atgggctcag catcatctcg attgttttaa gtagtgaagc ttcagttcca ggatcggttt
     1741 gttcccattt ccctgaggcc agttctcaga attgtggcag cttatgtcat ggctacagtc
     1801 tggtcatcat gtagttaact tctttctcct ggtaggggtc tcagtaccta gaagacagct
     1861 cacacgatat ggctcagaat attatctata gcccttgaag agggaactaa aggtccttgt
     1921 ctttgtttaa tgtctaaacg aatattattt ggtctcgttt gactgttttc tttgcttcta
     1981 tattttctca cttctctgat taaacttatt ctttggataa agttttccta cagacaaaag
     2041 gcaggcagag gacatggggg ggaaggccca gaggccctgc tccgtttcat aatgattaag
     2101 gtcaacagaa cactaaaata acccaatcca ggcaggacta ctaatggtcc agacccttca
     2161 gaaatgaagg tttgggtcac cccacatcat gtaaagaacc atgaccagct gagatgcttg
     2221 ttaaaggcaa agagaatatg aagtgggtag tagcaaaagg tagttataca taccacatga
     2281 ctagttacag aaacacagac tgtaattgtc atgagcattt cctccttatt tagctataat
     2341 atgtttgcat gtatgtgtat atatacaaag ttttgttttc tttcctctct tagtctttca
     2401 agtaacataa gacttattga ttttacatca tagttttaag caccgttaac ttttaacttt
     2461 tcacagtatt taagttatgg gatatcaagg agaagagtaa acattactca aggactttac
     2521 ctccttttct ggggaaggga ttagtgcact tttgaatgtg tgttctgtag ctgtatcatg
     2581 ttatatggaa ctatgacctt gttattgtct ttatttggag aataactatg atttaaggag
     2641 ctgtatatgg gtgccaaatt gacaaaaggt gaacttataa tggttaatct tatgtttcaa
     2701 cttgactggc tttggactgc ccagattaaa caatatttct gagtgtgtct aagacggtgt
     2761 ttccagatgt gattagcatt tgaatcagtg gactcagcag attgtcctct ctaacatggt
     2821 gggcaaaatc caatccactg aagacaggaa tagaacaaaa agtattggaa ggaggaattc
     2881 attccttttt ttcccctgct gcttcactgt tgagctagaa catttcatct tctcctgccc
     2941 ttggaatgga atttacacta atggcttccc tggttctcag gccttgggac tcaaactgaa
     3001 ttcaccacca gctttcctgg gtctccagca tgcagatggc aggtcatggg acttctcaat
     3061 taattacaag agccaaatcc ttaatgtatg tgtgtgtttg tgtgtgtgtg tgtgtgtgtg
     3121 tgtacagata gatacataga tagatagaca tattatctct ttatttttat atctatctat
     3181 ctatacacac acacacacac acacacaccc ctacctctag ataggtaggt aggtagatag
     3241 atggatagat agatagatag acagataaat agatagatag ttagatccat ctcctattgg
     3301 gtctgcttct ctagagatcc taactaatac atcccctaaa aggaaaatca gatcaaagaa
     3361 tgactccatt ttattcctgt gatatgacat ttaggtggtt ctccagggct ggctgagacc
     3421 atactgagtc attgtctgat ctattgtagc atgaattttc agtcatggtg aaggtgaaca
     3481 ctcggttttt ggattggaat ttatctgagg tggagttgga aacagcagct cctactctca
     3541 aatgcaggct atataaaaat catgcattaa gtgtagtaga ttccattaaa ggtgtactga
     3601 agggggcatc tcttttccta agacctcttt tctcatcaca gctttgatgg gtatacaagc
     3661 cttctgctcc accaaaactc attctctttc taccttgatg actccattct ctcttcctta
     3721 ctctgtctgc tttcctctac tcactacctt gctttttgga acaaacaggt ttccactggg
     3781 acttacatcc ttgtatttgc tacctctgct ccaacaggca tgtcaattaa tttttacaga
     3841 catgcacatt tccccttcca gcaagaattt tggtgtgaaa tgttcactac taaacatatg
     3901 ctttaccttt ttataatatg ttatcccagt aactcttcca ctgctagaga gtaggaggct
     3961 gaattaaaaa tgtggggcat tgtaaattgt gcagacacct gtgctctgga aaccatgtga
     4021 aaaaatgtcc tacaggagtc cagaggcatg cggcttaaaa tgaattatac attttgtgag
     4081 ctctgagcct ttggtgatgt ttccagacaa gcagaagctg catgtgaaat ttttctagcc
     4141 agggaaacac agggggccac agtggaaaaa ggaggtagct agtaaccctc ttcaaagcca
     4201 tcctcaggaa cagtggcttc attgtccttt gaacaatttt tatgcagtct ggtacaagtt
     4261 taaatatttt aagagtgatg ttcttgtttt gctagaacag aagagcagct gatttcctag
     4321 aattgagcct gttatacaag taactgttta ttgctttcag tttcaatctg aattccatcc
     4381 cagaacatgc tgttttgagt aaccttgaat tgacctaagg gattattttc ctggctggaa
     4441 aacattgagt aggagaacat ttacagtagg tcatttaaca atgtgatacc tggaaatgcc
     4501 tgtaactttt gggggctaag gagggagttc cagcgcttcc ctttttattg ttgcttttca
     4561 ggagcaagtg tgtggcattt agatctttta aatctttcta caaacaggct ggtcaataca
     4621 ggaagctgca gagggaacaa ttgatagggc tgatatcatg acttataatc attattttcg
     4681 attgttttca attcattctc cactcagtag atagtgattt aaaaaaaaca aaa
//
LOCUS       XM_032653503            2088 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus alpha-L-fucosidase 1 (FUCA1), mRNA.
ACCESSION   XM_032653503
VERSION     XM_032653503.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2088
                     /gene="FUCA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 8 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764684"
     CDS             59..1459
                     /gene="FUCA1"
                     /codon_start=1
                     /product="tissue alpha-L-fucosidase"
                     /protein_id="XP_032509394.1"
                     /db_xref="GeneID:116764684"
                     /translation="MKLRVVGAKLLLLLVLGAVRAPRCTHPPRCTDPPRRYTADWPSL
                     DSRPLPAWFDEAKFGVFVHWGVFSVPAWGSEWFWWHWKGEKLPQYESFMKENYPPNFT
                     YGDFGPRFTARFFHPDSWANLFEAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSEDLGP
                     HRDLVGELGTAIRSRNIRYGLYHSLLEWFHPLYLRDKKNGFKTQHFVRAKTMPELYDL
                     VIRYKPDLIWSDGEWECPDTYWNSTNFLAWLYNDSPVKDVVVVNDRWGQNCSCRHGGY
                     YNCQDKFKPETLPDHKWEMCTSIDKLSWGYRRNMAMADITSESRIISELIQTVSLGGN
                     YLLNIGPTKDGLIVPIFQERLLAVGKWLSINGEAIYASKPWRVQSEKNTTSVWYTSKG
                     SAVYAIFLHWPEDGILSLKSPITTSTTEVTMLGIEKYLKWSPNPGKGLLVYLPQLPPS
                     ALPTEFAWAVKLTGVE"
     misc_feature    155..1297
                     /gene="FUCA1"
                     /note="Alpha-L-fucosidase; Region: Alpha_L_fucos;
                     smart00812"
                     /db_xref="CDD:214829"
     misc_feature    1190..1447
                     /gene="FUCA1"
                     /note="Alpha-L-fucosidase C-terminal domain; Region:
                     Fucosidase_C; pfam16757"
                     /db_xref="CDD:465259"
ORIGIN      
        1 gcacttgcgc gttcagtggc ggcggtgggg ctccaaggct gctgtgccaa atcccgagat
       61 gaagttgcgg gtggtgggcg cgaagctgtt gctgctgctg gtgctcggcg cggtgcgggc
      121 tccgcgctgc acccaccctc cgcgctgcac cgaccctccg cgtcgctaca ccgcagactg
      181 gccgagtctg gactcccggc cgctgccggc ctggttcgac gaggccaaat ttggagtgtt
      241 tgtgcactgg ggcgtgtttt cggtgccggc ctggggcagt gagtggttct ggtggcattg
      301 gaagggcgaa aagctgccac agtacgagag tttcatgaag gagaactacc cgcccaattt
      361 cacctatggc gacttcgggc caagattcac tgcgcgcttc ttccacccgg acagctgggc
      421 caacctgttc gaggccgccg gggcgaagta tgtagtcctg acaacaaagc atcacgaagg
      481 cttcacaaac tggccaagtc ctgtgtcttg gaactggaac tctgaggatc tggggcccca
      541 tcgtgatttg gttggtgagt tgggaacagc catccgaagt aggaacatac gctatggact
      601 ctatcactca ctattagaat ggttccatcc tctctaccta cgtgataaga aaaatggctt
      661 caaaacacag cattttgtcc gtgcaaaaac aatgccagag ctatatgacc tcgttatcag
      721 gtacaaacct gacttgattt ggtctgatgg agagtgggaa tgtcctgata cttattggaa
      781 ctctacaaat tttcttgctt ggctctacaa tgatagccca gttaaggatg ttgtcgtagt
      841 aaatgaccga tggggtcaga actgttcctg tcgccatgga ggatactaca actgtcaaga
      901 taaattcaag ccagagacct tgccagatca caagtgggag atgtgcacct caatagacaa
      961 gctgtcctgg ggctatcgtc gcaacatggc aatggctgac atcacaagtg aatctcgaat
     1021 catttcggaa ctgattcaga cagtaagttt gggaggcaac tatcttctca acattggacc
     1081 aactaaagat ggactgattg ttcccatctt ccaagaaagg cttcttgctg ttgggaagtg
     1141 gctgagcatc aatggggagg ctatctatgc ctccaaacca tggagggtac aatctgaaaa
     1201 aaacacgacc tctgtgtggt atacctcaaa aggatcagct gtttatgcca ttttcctgca
     1261 ctggccagaa gatggaatct taagccttaa atcccccata actacttcga ctacagaggt
     1321 aacaatgctg ggaatcgaaa agtatctgaa gtggtcccca aatccaggta aaggtctcct
     1381 cgtgtacctg ccccagttac caccctctgc tcttccgact gagtttgctt gggctgtaaa
     1441 gctgacagga gtggagtgat cattggagtt caacaagaaa gggacactgc ctacactttg
     1501 attttcctct tatagtacca tcactgtaat caactactct tgtctactca cacatctctt
     1561 ttccaacgca ttttaataaa aggaaggaat tacgttacgc tgatgtctca caggatcaaa
     1621 agatctgaga tcgattgcta gcgtctctct ctctgatcag cagaagggat tgagcagtta
     1681 agctcatcct aactttggga attatctacg atggaaactt cactccattc tgtgtttcat
     1741 aacctgcttg tttactcaaa tgacttcaga tcaagaataa gccaagtcat cccattgcct
     1801 atgggaggag ctgaaaagga tttggcaaaa tccaccacat gctatttatt tagcatcaaa
     1861 cgtgaccagt tactcccagc tacccccagg agcaggagat cctggagggg aaggaaagtg
     1921 cttcctaggc tgctaataat cagcttttta gaagtttcca aagcaaacta agagctctga
     1981 aattcagttt atttacagtg atactatgaa gaaaatgaat gtgattctgc cctgctttct
     2041 ttaacacaat caaagaaatt tgtacattaa attattttct accaaaaa
//
LOCUS       XM_032653514            3666 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus von Willebrand factor A domain containing
            5B1 (VWA5B1), mRNA.
ACCESSION   XM_032653514
VERSION     XM_032653514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3666
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3666
                     /gene="VWA5B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 3% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764692"
     CDS             1..3666
                     /gene="VWA5B1"
                     /codon_start=1
                     /product="von Willebrand factor A domain-containing
                     protein 5B1"
                     /protein_id="XP_032509405.1"
                     /db_xref="GeneID:116764692"
                     /translation="MPGLLNQITGAALPLTASDVTSFVSGYALGLTASLTYGNLEAQP
                     FQGLFVYPLDEYTTVIGFEAVIADRVVTVQIKDKAKMEGGHLDATGLRATTVAGKKAR
                     KAETFCIIPPSCTPGKVALDEDLERILFVVNLGTIAPMENVTIFVSTSSELPTLPSGA
                     VRVLLPAVCAPTVPQFCTESTGPSNQQTHGKDRHCFGPRDLDSWNKLSLATLLDTDVS
                     NPMEYEFNFQLEIRGPCLLAGVESPTHEIRADASPSARSAKSIIITLANRHTFDRPVE
                     ILIHPSEPYMPHVLMEKGDMTLGEFDQHLKGRTDFIKGVKKDSSAERKTEIIRKRLHK
                     DIPHHSVIMLNFCPDLQSVQPNLRKTHGEFIFLIDRSGSMNGTNMHRVKDAMLVALKS
                     LMPACLFNVIGFGSTFKTLFPSSQTYNEESLAKACDNIRRMQADMGGTNILSPLKWVI
                     RQPVPRGHPRLLFVITDGAVNNTGKVLELLRNHAFSTRCYSFGIGPNVCHRLVKGLAT
                     VSKGSAEFLVEGERLQPKMVKSLKKAMAPVLSDVTVEWVFPETTEVLISPVSTSSLFP
                     GERLVGYGIVCDASLYISNPRTDKRRRYSMLHSQESGSSVFYHSQDEGPSPDSGDCAK
                     SLGTPFNLRQAKDAQPSSGDSATSPGLDFSQRRRAYSTNQITTHKPSPRALTASDPTT
                     AARRYPLRKTKLQDLTKQTSLDDPQWQIDLQPLLNSGPDLSQGPRLWGLVARRPSLLP
                     QGCQPFLPSGQETQAWSPMNELDLGSGLKPASDSCSPGDLELSHHPSAFETETSSDWE
                     PLAESEEQASPRRPVSPGPVLGKAVVKGLRDSQPLQWEVSFELGPPGPKRGGAREPDL
                     WGETFHHLAARAIIRDFEQLAEREREIEQGSSRRYQVNAVHTSKACNVISKYTAFVPV
                     DRSKSHYLPTVVGYPNSGAVLRMVSSRVLTQQSRGTSAGFGRSQTMPGEDSAAGDDVE
                     ESPTAPFSENTSPGREKYGGSPGPLRSLATNTLSSLKASEALFGSRLNLNKSRLLTRA
                     AKGFLGKPLTKAPESAPGSQSLDYVPLVSLQLASGAFLLNQAFCEATHIPMEKLKWTS
                     PFTCHRVSLTARQPPSPQTCTSPSPRHPSCDSFSPEPLAEGKPGWEPRAAVEHTGQLW
                     ATVVALAWLEHSSASYFVEWELVAAKANSWLEQQEVPEGRTRGTLKAAARQLFVLLRH
                     WDESLGFNMLCYNPNYV"
     misc_feature    4..237
                     /gene="VWA5B1"
                     /note="Vault protein inter-alpha-trypsin domain; Region:
                     VIT_2; pfam13757"
                     /db_xref="CDD:404621"
     misc_feature    43..435
                     /gene="VWA5B1"
                     /note="Vault protein inter-alpha-trypsin domain; Region:
                     VIT; pfam08487"
                     /db_xref="CDD:462492"
     misc_feature    1078..1587
                     /gene="VWA5B1"
                     /note="vWA_interalpha trypsin inhibitor (ITI): ITI is a
                     glycoprotein composed of three polypeptides- two heavy
                     chains and one light chain (bikunin). Bikunin confers the
                     protease-inhibitor function while the heavy chains are
                     involved in rendering stability to...; Region:
                     vWA_interalpha_trypsin_inhibitor; cd01461"
                     /db_xref="CDD:238738"
     misc_feature    order(1105..1107,1111..1113,1117..1119,1318..1320,
                     1399..1401)
                     /gene="VWA5B1"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238738"
ORIGIN      
        1 atgcctggtc tgctgaacca gatcacaggg gcagccctgc ccctcaccgc atccgacgtc
       61 acctcctttg tcagtggtta cgccctgggt ctcaccgcct ccctcaccta tggcaacctg
      121 gaagcccagc ccttccaggg tctctttgta tacccactgg atgagtacac cacggtgatc
      181 ggctttgagg cagtcattgc cgaccgagtc gtgacagtac agatcaagga caaagccaag
      241 atggagggtg gccacttaga tgccactggc ctccgagcta caactgttgc aggtaagaag
      301 gccagaaagg ctgaaacatt ctgcatcatc cctccttcct gcacaccagg aaaggtggct
      361 ttggacgagg atttggagcg gatcctcttt gtggtcaacc tggggacaat cgcccctatg
      421 gagaacgtca ccatctttgt cagcacctcc tcggagctcc cgacgctgcc cagcggggct
      481 gtgagagtcc tactacctgc tgtctgcgcc ccaaccgtgc ctcagttctg caccgagagc
      541 actggcccct ccaaccaaca gacccatggc aaggacaggc attgcttcgg cccccgggac
      601 ctggactcct ggaacaaatt gagcctggcg actctcctgg acaccgatgt gtccaacccc
      661 atggaatacg agttcaactt ccagctggag atccgtgggc cctgcctgct cgcaggggtg
      721 gagagtccca cccacgagat ccgagctgac gcctccccgt ccgcacgctc cgccaagagt
      781 atcattatca ccctggccaa caggcacacc ttcgaccggc ccgtggagat cctcatccac
      841 cccagcgagc cctacatgcc acatgtcctg atggagaaag gggacatgac cctgggagag
      901 tttgaccagc acttgaaggg aagaacagat ttcattaaag gggtgaagaa ggacagcagt
      961 gcagagcgaa agacagaaat catccggaaa cgcctccata aggacattcc ccaccattct
     1021 gtcatcatgc tcaacttctg tcctgacctc cagtcagtcc agccgaacct aagaaagacc
     1081 catggcgagt ttatcttcct catcgacagg agtggcagca tgaatgggac caacatgcac
     1141 cgagtcaagg atgccatgct ggtcgctctt aagagcctca tgccagcctg cctcttcaat
     1201 gtcattgggt ttggatccac gtttaagacc ctcttccctt ccagtcagac ctacaatgag
     1261 gagagtttgg ccaaggcctg tgacaacatc cggagaatgc aagctgacat gggtggcacc
     1321 aacattctct ccccgctcaa gtgggtcatc cggcagccag tgccccgagg ccacccgagg
     1381 ctgctcttcg tcatcacaga tggtgccgtc aacaacaccg ggaaggtgct ggagctgctg
     1441 cgaaaccatg ccttctccac caggtgctat agctttggaa ttggacccaa cgtctgccac
     1501 agactggtga aagggctggc aactgtgtcc aagggcagtg ctgagttcct ggtggagggg
     1561 gagcggctgc aacccaagat ggtcaaatcc ctgaagaagg ccatggcccc agtcctgagt
     1621 gatgtgactg tggagtgggt cttccctgag actaccgagg tcctgatctc acctgtcagc
     1681 accagctccc tcttccctgg agaacggctg gtggggtatg gcattgtatg tgatgcctcc
     1741 ttatacatct ccaatcccag aacagacaag agaagacgat acagcatgct acactctcag
     1801 gagtccggca gctctgtctt ctaccactca caggatgagg gacctagccc agacagtgga
     1861 gactgtgcca agagcttggg gacacccttc aacctgaggc aggccaaaga tgcccagcca
     1921 tccagcggag actccgccac cagtcctggt ctagacttct cccagcgacg gcgggcatac
     1981 agcaccaacc agatcaccac ccacaagccc tctccaaggg cccttacagc cagcgacccc
     2041 acaacagctg ccaggagata cccactgagg aaaaccaagc tgcaggacct caccaagcag
     2101 accagcctgg atgatccgca gtggcagatt gatttgcagc ccttgctgaa cagtggcccg
     2161 gacctgagcc agggccccag actctggggt ctagtggccc gcaggccctc tctgctgccc
     2221 caaggctgcc agcccttcct gccctccggc caggagaccc aggcttggag ccccatgaac
     2281 gagctggatc ttgggtctgg tctgaagcct gcctcagaca gctgcagccc tggggacctg
     2341 gagctgtccc atcacccctc cgccttcgag accgagacgt cctcggactg ggagccccta
     2401 gccgagtccg aggagcaggc cagtccccgc aggcccgtca gcccaggacc cgtgctgggc
     2461 aaggccgtgg tcaagggcct gcgcgacagc cagcctttgc agtgggaagt gagctttgag
     2521 ctggggcctc ccggccccaa gaggggcggc gcgcgcgagc ccgacctgtg gggcgagacc
     2581 ttccaccacc tggcggcccg cgccatcatc cgcgacttcg agcagctggc ggagcgcgag
     2641 cgagagatcg agcaagggtc cagccgccgc taccaagtga acgccgtgca caccagcaag
     2701 gcctgcaacg tcatcagcaa gtacacagcc ttcgtgcctg tggacagaag caagagccat
     2761 tacctgccca ccgtcgtggg ataccccaac tctggtgctg tgttgcggat ggtcagctct
     2821 cgggtgctga cccaacagtc gaggggcact tctgctggtt tcgggcggtc ccagacgatg
     2881 cctggggaag actcggctgc cggagatgat gtggaggaaa gccccactgc gcccttcagt
     2941 gagaacacat ccccgggccg cgagaagtat ggtggctctc caggtcccct gcgcagtctg
     3001 gccaccaaca ccctttcttc cttgaaggcc tcagaggctc tctttggatc caggctgaat
     3061 ctcaacaagt ccaggctgct gacgcgagcg gccaagggct tcctgggcaa gccgctgacc
     3121 aaggctccag agtcagcccc aggaagccag agcttggact acgtccccct ggtgtctctg
     3181 cagctggcct ccggagcctt ccttctcaac caagccttct gtgaggccac ccatatcccc
     3241 atggagaagc tcaagtggac ctcacccttc acctgccacc gagtgtccct caccgcccgc
     3301 cagcccccga gtccccagac gtgcaccagc ccctcacctc ggcacccctc ctgtgacagc
     3361 ttctccccgg agcctctggc cgagggcaag ccgggctggg agcccagggc tgcggtagag
     3421 cacacagggc agctgtgggc cacagtggtg gcgctggcgt ggctggagca cagctccgcc
     3481 tcctacttcg ttgagtggga gctggtggcc gccaaggcca actcgtggct ggagcagcag
     3541 gaggtgcccg agggccgcac gcggggcacg ctcaaggctg ccgcccgcca gctgtttgtg
     3601 ctcctgaggc actgggatga gagcctcggg ttcaatatgc tctgctataa cccgaattat
     3661 gtgtag
//
LOCUS       XM_032653528            5007 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ligand dependent nuclear receptor
            interacting factor 1 (LRIF1), transcript variant X1, mRNA.
ACCESSION   XM_032653528
VERSION     XM_032653528.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5007
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5007
                     /gene="LRIF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764699"
     CDS             562..2850
                     /gene="LRIF1"
                     /codon_start=1
                     /product="ligand-dependent nuclear receptor-interacting
                     factor 1 isoform X1"
                     /protein_id="XP_032509419.1"
                     /db_xref="GeneID:116764699"
                     /translation="MSNNLQRVFLKPTEEKSGSASHCVSGCMYQVVQTIGSDGKNLLQ
                     LLPIPNSSGNLIPLVQSTVMSDALKGNTGNPVQVTFQTQISSSSTSASVQLPIFQPAS
                     SSNYFLTRTVDTAEKVRVTSVGTENFTSSVSKVQRHGVKIDGLTMQTFAVSPSSTQND
                     SSYILVNTQSLPMTVKSPVLPSGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTST
                     SGTVEASQIPTVIYVSPVNTVKNVVTKNFQNIYPKPVTEIAKPMILNTTQIPMNVAKE
                     TQLKGGQHSQAAPVKWIFQENLQPCTPSLVPVKSSNNVASKILKTFVDRKSLGDNTVN
                     LPPLSTISPSGTQSKSMPIKDNALVMFNGKVYLLAKKGTDVLPSQIDQENSVSPDIPP
                     RKDTSQIVSSSPVTEISREVVSIVLAKSKSSQMETKSLSNTQLASMANLRAEKNKKVE
                     KPSLSTPNPHSMNQSINYLKHSKTLFSKPDFPDGFSTGQNSPRKGNIIHSIEKISSSV
                     DATTVTSQQCVFRDQEPKIQNEMASTLEKVTQERNDKSNSQGRSNKASYLNNDAELRK
                     IFGLTKDLSVCLTRIPHHLGSGGGFDSFSCLVKSDTYKETEFIVKEEGRKQGFDKKRK
                     AKTNKKMDHTKKRRTESVYNTTVNGGTNVTSSQLVSSILPTSNVSHHNILRGHNKTRE
                     EKRSEVEHSTHGNEEKGTLSSNTAFEQSHFFSKNYTEDIFPMTPPELEETIRDEKIRR
                     LKQVLREKEAALEEMRKKMNQK"
     misc_feature    643..2844
                     /gene="LRIF1"
                     /note="Ligand-dependent nuclear receptor-interacting
                     factor 1; Region: LRIF1; pfam15741"
                     /db_xref="CDD:464837"
ORIGIN      
        1 tgatccggaa gaagagacag caaacatcac ctgcgattgg atcgcagcat aagggcgggg
       61 cgttagcgag ccattcacct tggcgaccgg atgtggcgat accggaagct gctaggctga
      121 gctttgctct cgctggcggc cttggtgggc ggggtcggcc gagcccctct ggcttggtct
      181 tcaccactga cccggcaccg ataggggcgg cgccattaag gccacgcctc ccgcgctgat
      241 tcccggtgac tctggagcga tctcctaggc gctgaggagg cggagactca gggctgtttt
      301 ctcagaggtt agggacggac ccggaccgtc agcctcttcg attcttccgg tttctggtgg
      361 ctgcgccgcc tccatccgaa gcctgaggat acgccctctc gagagcccgc cgtcgctctc
      421 ctttcagctt ctaacctctc tgagctgcta cggggcaact ccatccctac attctctcgc
      481 tctggttctc gccacttgga ggacctcggc cccgacactg ccccctttcc tggatgtact
      541 ggtcccttcc actcctctaa aatgtccaat aacctacaga gggtcttcct gaaacctaca
      601 gaggaaaagt caggcagcgc ctcgcactgt gtttcaggct gcatgtacca agtagttcag
      661 acgattggct cggatggaaa aaatcttctg caattacttc caattcctaa ttcctctgga
      721 aatcttatac cactagttca atctacagtc atgtctgatg ctttgaaagg gaatacagga
      781 aatccagttc aagttacttt tcagactcag atttccagct cctccacaag tgcatcagtt
      841 caattgccca tttttcagcc agccagttct tcaaactatt ttcttacaag aacagtagac
      901 acagcagaaa aagttagagt tacttctgtg ggaactgaaa attttacctc atcagtttct
      961 aaagttcaga ggcatggtgt gaaaattgat ggactcacca tgcaaacgtt tgctgtttct
     1021 ccctcctcaa cacaaaatga ttcatcttat attttagtaa atacccagag tcttccaatg
     1081 actgtgaagt ctccggtttt gccttctggg catcatttac agattccagc ccatgctgaa
     1141 gtgaaatctg taccagcgtc ttcattgcct ccttcagttc agcaaaagat acttgcaact
     1201 gcaaccacaa gtacctcagg aacagttgag gcctcccaaa taccaactgt tatttatgta
     1261 tctcctgtaa atacagtgaa aaatgtagtt accaagaact ttcaaaacat ttacccaaaa
     1321 cctgttacag aaatagcaaa gccaatgata ctaaacacca cacagattcc aatgaatgtt
     1381 gctaaagaga cacaattaaa aggtggtcag cattctcaag ctgctccagt gaaatggatt
     1441 tttcaagaga atctacagcc ttgcactcca tctcttgttc ctgttaaatc ttcaaataat
     1501 gtggcttcaa agattttaaa aacttttgta gataggaaaa gtttgggaga taatactgta
     1561 aatttgccac cattgagtac catcagtcct agtgggacac aatccaaaag tatgcctatt
     1621 aaagataatg ctttggttat gtttaatggg aaagtctatc tattggctaa aaaggggaca
     1681 gatgttttgc catcacaaat tgaccaagag aattctgttt ctcctgatat tccaccaaga
     1741 aaagatacat cacagatagt aagttcaagt ccagtcacag aaatatccag agaggttgta
     1801 agtattgttt tggctaaaag taaatcttcc cagatggaga caaaatcact ttcaaatacc
     1861 cagcttgctt ccatggccaa tctaagggca gagaagaata agaaagtgga gaaaccatct
     1921 ctttctaccc caaacccaca tagtatgaac caatccatta actacttaaa gcacagtaag
     1981 actttattct caaagccaga ctttccagat ggatttagta caggacaaaa ttcccccaga
     2041 aaaggaaata tcatccacag catagagaaa ataagttcct ctgttgatgc aacaactgtt
     2101 acttcacaac agtgtgtttt cagagaccaa gaaccaaaga tccagaatga gatggcatca
     2161 acattagaaa aagttactca agaaagaaat gacaagagca attcccaagg aagaagcaat
     2221 aaggcatcat atctgaacaa tgatgctgaa cttagaaaga tatttggtct cactaaagat
     2281 ttgagcgtgt gccttactcg gattcctcac catttgggct ctggaggagg ttttgattcc
     2341 tttagctgtt tggtgaaaag tgatacttac aaagagacag agtttatagt gaaggaggaa
     2401 gggagaaaac agggttttga taagaaaaga aaagcaaaaa ccaataagaa gatggatcac
     2461 acaaagaaga gaagaactga gagtgtttat aacacaactg taaatggagg aactaatgtc
     2521 accagttccc aactcgttag cagtatttta ccaacttcaa atgtatcaca ccataacatt
     2581 ctcagaggcc acaataaaac cagggaagaa aagagatctg aggtagaaca ctctacccat
     2641 gggaatgaag agaaaggcac actgagttca aatacagctt ttgagcaaag ccatttcttc
     2701 agtaaaaact atactgaaga tattttcccc atgacaccac cagagttaga agaaaccatt
     2761 agagatgaaa aaataagaag acttaagcag gtgctgagag aaaaagaagc agctcttgaa
     2821 gaaatgcgta agaagatgaa ccaaaaataa tgaaatgttg ctatacgtaa agaccagtga
     2881 aatagctgtg ttttttcata tacttttgca ttaagttaat tatagatgca ttctgaaagt
     2941 gtctttgaat attaaacttg tcttttcatc agttgattat aaaattttat ttaaggaata
     3001 cagaaaaggt tgattatatg acttttgtga ataatctcat ggggtatctg aatctttgtc
     3061 tagatacctc tttttggaag gaaaagtttt ctatttttct attactttaa cttgaattcc
     3121 ccaagtttga atatttgtta ttgtttgtac atttagctaa attgctcaga tgttattcca
     3181 acaataggta attattgtgt actttttaaa ttatacaatc caacagagga aatcagctct
     3241 aaacttagct tttccaatgg gcttgtatat ctatatgtct ctttacccat aaatgataca
     3301 ttctcaccat tgttgtaagt tttttttaat ttcatgaaag aaaatgtatt atagcagcat
     3361 tatttaaaaa ttcaaacatt tctcaaaagt gagggacatt tgttttataa cctttacaaa
     3421 gtagtttcat ataatacaaa atgggtttta gaattcaggc tatatagtgt attgtttgct
     3481 tcaagtgata tgttattatt cctagacaaa tgcttccttt ttttgtgggg gggggaatat
     3541 gtacatatgt gacttggatt gtgtgaaaag taaatatgaa catggccaca tttaatactt
     3601 tttaaagtgg taaagtgtag tttttcataa tagaggcaga cattttccta tctggttatc
     3661 tttgatttgg cgagttggag agtggtgtag agatggggat taagggagag gaaatggtta
     3721 ttttttttta aatgtttaac aatttcctgg aagtagtgtt ggtcaaataa aacctggaca
     3781 ttggcaacaa aatagaaaac aataagtcag aaaatactga gaaggagtag aacaaatgca
     3841 aactgagcat cagctagatt ctcttgcctt tttgggtttt tgtaacagct ttattaagat
     3901 aatttgtata tcataaagtt cacccttttg aagtgtacaa ctcagtggtg gttatattca
     3961 cagagttgtg caaccatcaa catgatctaa ttagaacatt ttcattacct ccaaaaaacc
     4021 tcatacccat tagcagtcac tccccagacc ctccttcccc cagccgttgg caaccaccaa
     4081 cactttctgc ctgtataaat ttgcctgttt gggatattca tatgcatgga atgaatcatt
     4141 caatatatgt ccctttgtga ctggtttctt tcacttaatg ttttcaagtt tcatctgtgt
     4201 tggggcatgt attagtatgt aattcttttt taattgctga gtaatattcc actgtatgga
     4261 tataacacac tttatcattc atttgtctat ggacatttgg gttgtgtaca catttggcta
     4321 ctaggatgtt atgttgctgt gttgctctta acgtttgggt acatgttttg gtgtggacat
     4381 aatgttttca agtctcttgg gtatatacct aggagtgtaa ttgctggtca taccctaact
     4441 cattgaggaa ctgccaaact attccaggca gatttttctc cccctactcc accaaaatgg
     4501 atcttgttaa ggacaccagt gacttccatg ttactagatg cagtggtcaa ttgtcagtct
     4561 taatttatct atcagtggga atataatttc atgaattatt acctcctttg aaaaaatttt
     4621 aaacatttta taaaagaatc agtacatgtc cattgtggga aaattgaaaa tacaaactaa
     4681 aatattaaaa attcactttc ccatcaagct aaaacattaa atttgggggc taggagatac
     4741 atagttaaag gctatcagta aatagatatt atttgaagtc ataggtctgg aaaacttcac
     4801 ttagggaaac agtataaaca gagaagttaa aatggtgggc tcatgtcaga atacatttaa
     4861 aggttggaaa aagggcaatc tcaaatgaat tttgaggatt ggaagattat tgaatgaatt
     4921 gtatttataa atccttgaat agtgcttgac acatagcaat gtatcaatgt ttgttaaata
     4981 aaataaattc aactaaaatc atcctaa
//
LOCUS       XM_032653533            4508 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ligand dependent nuclear receptor
            interacting factor 1 (LRIF1), transcript variant X2, mRNA.
ACCESSION   XM_032653533
VERSION     XM_032653533.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4508
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4508
                     /gene="LRIF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764699"
     CDS             144..2351
                     /gene="LRIF1"
                     /codon_start=1
                     /product="ligand-dependent nuclear receptor-interacting
                     factor 1 isoform X2"
                     /protein_id="XP_032509424.1"
                     /db_xref="GeneID:116764699"
                     /translation="MYQVVQTIGSDGKNLLQLLPIPNSSGNLIPLVQSTVMSDALKGN
                     TGNPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTAEKVRVTSVGTENFT
                     SSVSKVQRHGVKIDGLTMQTFAVSPSSTQNDSSYILVNTQSLPMTVKSPVLPSGHHLQ
                     IPAHAEVKSVPASSLPPSVQQKILATATTSTSGTVEASQIPTVIYVSPVNTVKNVVTK
                     NFQNIYPKPVTEIAKPMILNTTQIPMNVAKETQLKGGQHSQAAPVKWIFQENLQPCTP
                     SLVPVKSSNNVASKILKTFVDRKSLGDNTVNLPPLSTISPSGTQSKSMPIKDNALVMF
                     NGKVYLLAKKGTDVLPSQIDQENSVSPDIPPRKDTSQIVSSSPVTEISREVVSIVLAK
                     SKSSQMETKSLSNTQLASMANLRAEKNKKVEKPSLSTPNPHSMNQSINYLKHSKTLFS
                     KPDFPDGFSTGQNSPRKGNIIHSIEKISSSVDATTVTSQQCVFRDQEPKIQNEMASTL
                     EKVTQERNDKSNSQGRSNKASYLNNDAELRKIFGLTKDLSVCLTRIPHHLGSGGGFDS
                     FSCLVKSDTYKETEFIVKEEGRKQGFDKKRKAKTNKKMDHTKKRRTESVYNTTVNGGT
                     NVTSSQLVSSILPTSNVSHHNILRGHNKTREEKRSEVEHSTHGNEEKGTLSSNTAFEQ
                     SHFFSKNYTEDIFPMTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMNQK"
     misc_feature    144..2345
                     /gene="LRIF1"
                     /note="Ligand-dependent nuclear receptor-interacting
                     factor 1; Region: LRIF1; pfam15741"
                     /db_xref="CDD:464837"
ORIGIN      
        1 ccacttggag gacctcggcc ccgacactgc cccctttcct ggatgtactg gtcccttcca
       61 ctcctctaaa atgtccaata acctacagag ggtcttcctg aaacctacag aggaaaagtc
      121 aggcagcgcc tcgcactggc tgcatgtacc aagtagttca gacgattggc tcggatggaa
      181 aaaatcttct gcaattactt ccaattccta attcctctgg aaatcttata ccactagttc
      241 aatctacagt catgtctgat gctttgaaag ggaatacagg aaatccagtt caagttactt
      301 ttcagactca gatttccagc tcctccacaa gtgcatcagt tcaattgccc atttttcagc
      361 cagccagttc ttcaaactat tttcttacaa gaacagtaga cacagcagaa aaagttagag
      421 ttacttctgt gggaactgaa aattttacct catcagtttc taaagttcag aggcatggtg
      481 tgaaaattga tggactcacc atgcaaacgt ttgctgtttc tccctcctca acacaaaatg
      541 attcatctta tattttagta aatacccaga gtcttccaat gactgtgaag tctccggttt
      601 tgccttctgg gcatcattta cagattccag cccatgctga agtgaaatct gtaccagcgt
      661 cttcattgcc tccttcagtt cagcaaaaga tacttgcaac tgcaaccaca agtacctcag
      721 gaacagttga ggcctcccaa ataccaactg ttatttatgt atctcctgta aatacagtga
      781 aaaatgtagt taccaagaac tttcaaaaca tttacccaaa acctgttaca gaaatagcaa
      841 agccaatgat actaaacacc acacagattc caatgaatgt tgctaaagag acacaattaa
      901 aaggtggtca gcattctcaa gctgctccag tgaaatggat ttttcaagag aatctacagc
      961 cttgcactcc atctcttgtt cctgttaaat cttcaaataa tgtggcttca aagattttaa
     1021 aaacttttgt agataggaaa agtttgggag ataatactgt aaatttgcca ccattgagta
     1081 ccatcagtcc tagtgggaca caatccaaaa gtatgcctat taaagataat gctttggtta
     1141 tgtttaatgg gaaagtctat ctattggcta aaaaggggac agatgttttg ccatcacaaa
     1201 ttgaccaaga gaattctgtt tctcctgata ttccaccaag aaaagataca tcacagatag
     1261 taagttcaag tccagtcaca gaaatatcca gagaggttgt aagtattgtt ttggctaaaa
     1321 gtaaatcttc ccagatggag acaaaatcac tttcaaatac ccagcttgct tccatggcca
     1381 atctaagggc agagaagaat aagaaagtgg agaaaccatc tctttctacc ccaaacccac
     1441 atagtatgaa ccaatccatt aactacttaa agcacagtaa gactttattc tcaaagccag
     1501 actttccaga tggatttagt acaggacaaa attcccccag aaaaggaaat atcatccaca
     1561 gcatagagaa aataagttcc tctgttgatg caacaactgt tacttcacaa cagtgtgttt
     1621 tcagagacca agaaccaaag atccagaatg agatggcatc aacattagaa aaagttactc
     1681 aagaaagaaa tgacaagagc aattcccaag gaagaagcaa taaggcatca tatctgaaca
     1741 atgatgctga acttagaaag atatttggtc tcactaaaga tttgagcgtg tgccttactc
     1801 ggattcctca ccatttgggc tctggaggag gttttgattc ctttagctgt ttggtgaaaa
     1861 gtgatactta caaagagaca gagtttatag tgaaggagga agggagaaaa cagggttttg
     1921 ataagaaaag aaaagcaaaa accaataaga agatggatca cacaaagaag agaagaactg
     1981 agagtgttta taacacaact gtaaatggag gaactaatgt caccagttcc caactcgtta
     2041 gcagtatttt accaacttca aatgtatcac accataacat tctcagaggc cacaataaaa
     2101 ccagggaaga aaagagatct gaggtagaac actctaccca tgggaatgaa gagaaaggca
     2161 cactgagttc aaatacagct tttgagcaaa gccatttctt cagtaaaaac tatactgaag
     2221 atattttccc catgacacca ccagagttag aagaaaccat tagagatgaa aaaataagaa
     2281 gacttaagca ggtgctgaga gaaaaagaag cagctcttga agaaatgcgt aagaagatga
     2341 accaaaaata atgaaatgtt gctatacgta aagaccagtg aaatagctgt gttttttcat
     2401 atacttttgc attaagttaa ttatagatgc attctgaaag tgtctttgaa tattaaactt
     2461 gtcttttcat cagttgatta taaaatttta tttaaggaat acagaaaagg ttgattatat
     2521 gacttttgtg aataatctca tggggtatct gaatctttgt ctagatacct ctttttggaa
     2581 ggaaaagttt tctatttttc tattacttta acttgaattc cccaagtttg aatatttgtt
     2641 attgtttgta catttagcta aattgctcag atgttattcc aacaataggt aattattgtg
     2701 tactttttaa attatacaat ccaacagagg aaatcagctc taaacttagc ttttccaatg
     2761 ggcttgtata tctatatgtc tctttaccca taaatgatac attctcacca ttgttgtaag
     2821 ttttttttaa tttcatgaaa gaaaatgtat tatagcagca ttatttaaaa attcaaacat
     2881 ttctcaaaag tgagggacat ttgttttata acctttacaa agtagtttca tataatacaa
     2941 aatgggtttt agaattcagg ctatatagtg tattgtttgc ttcaagtgat atgttattat
     3001 tcctagacaa atgcttcctt tttttgtggg ggggggaata tgtacatatg tgacttggat
     3061 tgtgtgaaaa gtaaatatga acatggccac atttaatact ttttaaagtg gtaaagtgta
     3121 gtttttcata atagaggcag acattttcct atctggttat ctttgatttg gcgagttgga
     3181 gagtggtgta gagatgggga ttaagggaga ggaaatggtt attttttttt aaatgtttaa
     3241 caatttcctg gaagtagtgt tggtcaaata aaacctggac attggcaaca aaatagaaaa
     3301 caataagtca gaaaatactg agaaggagta gaacaaatgc aaactgagca tcagctagat
     3361 tctcttgcct ttttgggttt ttgtaacagc tttattaaga taatttgtat atcataaagt
     3421 tcaccctttt gaagtgtaca actcagtggt ggttatattc acagagttgt gcaaccatca
     3481 acatgatcta attagaacat tttcattacc tccaaaaaac ctcataccca ttagcagtca
     3541 ctccccagac cctccttccc ccagccgttg gcaaccacca acactttctg cctgtataaa
     3601 tttgcctgtt tgggatattc atatgcatgg aatgaatcat tcaatatatg tccctttgtg
     3661 actggtttct ttcacttaat gttttcaagt ttcatctgtg ttggggcatg tattagtatg
     3721 taattctttt ttaattgctg agtaatattc cactgtatgg atataacaca ctttatcatt
     3781 catttgtcta tggacatttg ggttgtgtac acatttggct actaggatgt tatgttgctg
     3841 tgttgctctt aacgtttggg tacatgtttt ggtgtggaca taatgttttc aagtctcttg
     3901 ggtatatacc taggagtgta attgctggtc ataccctaac tcattgagga actgccaaac
     3961 tattccaggc agatttttct ccccctactc caccaaaatg gatcttgtta aggacaccag
     4021 tgacttccat gttactagat gcagtggtca attgtcagtc ttaatttatc tatcagtggg
     4081 aatataattt catgaattat tacctccttt gaaaaaattt taaacatttt ataaaagaat
     4141 cagtacatgt ccattgtggg aaaattgaaa atacaaacta aaatattaaa aattcacttt
     4201 cccatcaagc taaaacatta aatttggggg ctaggagata catagttaaa ggctatcagt
     4261 aaatagatat tatttgaagt cataggtctg gaaaacttca cttagggaaa cagtataaac
     4321 agagaagtta aaatggtggg ctcatgtcag aatacattta aaggttggaa aaagggcaat
     4381 ctcaaatgaa ttttgaggat tggaagatta ttgaatgaat tgtatttata aatccttgaa
     4441 tagtgcttga cacatagcaa tgtatcaatg tttgttaaat aaaataaatt caactaaaat
     4501 catcctaa
//
LOCUS       XM_032653542            3492 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ligand dependent nuclear receptor
            interacting factor 1 (LRIF1), transcript variant X3, mRNA.
ACCESSION   XM_032653542
VERSION     XM_032653542.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3492
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3492
                     /gene="LRIF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764699"
     CDS             637..1335
                     /gene="LRIF1"
                     /codon_start=1
                     /product="ligand-dependent nuclear receptor-interacting
                     factor 1 isoform X3"
                     /protein_id="XP_032509433.1"
                     /db_xref="GeneID:116764699"
                     /translation="MASTLEKVTQERNDKSNSQGRSNKASYLNNDAELRKIFGLTKDL
                     SVCLTRIPHHLGSGGGFDSFSCLVKSDTYKETEFIVKEEGRKQGFDKKRKAKTNKKMD
                     HTKKRRTESVYNTTVNGGTNVTSSQLVSSILPTSNVSHHNILRGHNKTREEKRSEVEH
                     STHGNEEKGTLSSNTAFEQSHFFSKNYTEDIFPMTPPELEETIRDEKIRRLKQVLREK
                     EAALEEMRKKMNQK"
     misc_feature    <637..1329
                     /gene="LRIF1"
                     /note="Ligand-dependent nuclear receptor-interacting
                     factor 1; Region: LRIF1; pfam15741"
                     /db_xref="CDD:464837"
ORIGIN      
        1 cggaagaaga gacagcaaac atcacctgcg attggatcgc agcataaggg cggggcgtta
       61 gcgagccatt caccttggcg accggatgtg gcgataccgg aagctgctag gctgagcttt
      121 gctctcgctg gcggccttgg tgggcggggt cggccgagcc cctctggctt ggtcttcacc
      181 actgacccgg caccgatagg ggcggcgcca ttaaggccac gcctcccgcg ctgattcccg
      241 gtgactctgg agcgatctcc taggcgctga ggaggcggag actcagggct gttttctcag
      301 aggttaggga cggacccgga ccgtcagcct cttcgattct tccggtttct ggtggctgcg
      361 ccgcctccat ccgaagcctg aggatacgcc ctctcgagag cccgccgtcg ctctcctttc
      421 agcttctaac ctctctgagc tgctacgggg caactccatc cctacattct ctcgctctgg
      481 ttctcgccac ttggaggacc tcggccccga cactgccccc tttcctggat gtactggtcc
      541 cttccactcc tctaaaatgt ccaataacct acagagggtc ttcctgaaac ctacagagga
      601 aaagtcaggc agcgcctcgc actgatccag aatgagatgg catcaacatt agaaaaagtt
      661 actcaagaaa gaaatgacaa gagcaattcc caaggaagaa gcaataaggc atcatatctg
      721 aacaatgatg ctgaacttag aaagatattt ggtctcacta aagatttgag cgtgtgcctt
      781 actcggattc ctcaccattt gggctctgga ggaggttttg attcctttag ctgtttggtg
      841 aaaagtgata cttacaaaga gacagagttt atagtgaagg aggaagggag aaaacagggt
      901 tttgataaga aaagaaaagc aaaaaccaat aagaagatgg atcacacaaa gaagagaaga
      961 actgagagtg tttataacac aactgtaaat ggaggaacta atgtcaccag ttcccaactc
     1021 gttagcagta ttttaccaac ttcaaatgta tcacaccata acattctcag aggccacaat
     1081 aaaaccaggg aagaaaagag atctgaggta gaacactcta cccatgggaa tgaagagaaa
     1141 ggcacactga gttcaaatac agcttttgag caaagccatt tcttcagtaa aaactatact
     1201 gaagatattt tccccatgac accaccagag ttagaagaaa ccattagaga tgaaaaaata
     1261 agaagactta agcaggtgct gagagaaaaa gaagcagctc ttgaagaaat gcgtaagaag
     1321 atgaaccaaa aataatgaaa tgttgctata cgtaaagacc agtgaaatag ctgtgttttt
     1381 tcatatactt ttgcattaag ttaattatag atgcattctg aaagtgtctt tgaatattaa
     1441 acttgtcttt tcatcagttg attataaaat tttatttaag gaatacagaa aaggttgatt
     1501 atatgacttt tgtgaataat ctcatggggt atctgaatct ttgtctagat acctcttttt
     1561 ggaaggaaaa gttttctatt tttctattac tttaacttga attccccaag tttgaatatt
     1621 tgttattgtt tgtacattta gctaaattgc tcagatgtta ttccaacaat aggtaattat
     1681 tgtgtacttt ttaaattata caatccaaca gaggaaatca gctctaaact tagcttttcc
     1741 aatgggcttg tatatctata tgtctcttta cccataaatg atacattctc accattgttg
     1801 taagtttttt ttaatttcat gaaagaaaat gtattatagc agcattattt aaaaattcaa
     1861 acatttctca aaagtgaggg acatttgttt tataaccttt acaaagtagt ttcatataat
     1921 acaaaatggg ttttagaatt caggctatat agtgtattgt ttgcttcaag tgatatgtta
     1981 ttattcctag acaaatgctt cctttttttg tggggggggg aatatgtaca tatgtgactt
     2041 ggattgtgtg aaaagtaaat atgaacatgg ccacatttaa tactttttaa agtggtaaag
     2101 tgtagttttt cataatagag gcagacattt tcctatctgg ttatctttga tttggcgagt
     2161 tggagagtgg tgtagagatg gggattaagg gagaggaaat ggttattttt ttttaaatgt
     2221 ttaacaattt cctggaagta gtgttggtca aataaaacct ggacattggc aacaaaatag
     2281 aaaacaataa gtcagaaaat actgagaagg agtagaacaa atgcaaactg agcatcagct
     2341 agattctctt gcctttttgg gtttttgtaa cagctttatt aagataattt gtatatcata
     2401 aagttcaccc ttttgaagtg tacaactcag tggtggttat attcacagag ttgtgcaacc
     2461 atcaacatga tctaattaga acattttcat tacctccaaa aaacctcata cccattagca
     2521 gtcactcccc agaccctcct tcccccagcc gttggcaacc accaacactt tctgcctgta
     2581 taaatttgcc tgtttgggat attcatatgc atggaatgaa tcattcaata tatgtccctt
     2641 tgtgactggt ttctttcact taatgttttc aagtttcatc tgtgttgggg catgtattag
     2701 tatgtaattc ttttttaatt gctgagtaat attccactgt atggatataa cacactttat
     2761 cattcatttg tctatggaca tttgggttgt gtacacattt ggctactagg atgttatgtt
     2821 gctgtgttgc tcttaacgtt tgggtacatg ttttggtgtg gacataatgt tttcaagtct
     2881 cttgggtata tacctaggag tgtaattgct ggtcataccc taactcattg aggaactgcc
     2941 aaactattcc aggcagattt ttctccccct actccaccaa aatggatctt gttaaggaca
     3001 ccagtgactt ccatgttact agatgcagtg gtcaattgtc agtcttaatt tatctatcag
     3061 tgggaatata atttcatgaa ttattacctc ctttgaaaaa attttaaaca ttttataaaa
     3121 gaatcagtac atgtccattg tgggaaaatt gaaaatacaa actaaaatat taaaaattca
     3181 ctttcccatc aagctaaaac attaaatttg ggggctagga gatacatagt taaaggctat
     3241 cagtaaatag atattatttg aagtcatagg tctggaaaac ttcacttagg gaaacagtat
     3301 aaacagagaa gttaaaatgg tgggctcatg tcagaataca tttaaaggtt ggaaaaaggg
     3361 caatctcaaa tgaattttga ggattggaag attattgaat gaattgtatt tataaatcct
     3421 tgaatagtgc ttgacacata gcaatgtatc aatgtttgtt aaataaaata aattcaacta
     3481 aaatcatcct aa
//
LOCUS       XM_032653552            2246 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus carbonic anhydrase 14 (CA14), mRNA.
ACCESSION   XM_032653552
VERSION     XM_032653552.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2246
                     /gene="CA14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 Proteins, and 6%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764717"
     CDS             839..1849
                     /gene="CA14"
                     /codon_start=1
                     /product="carbonic anhydrase 14"
                     /protein_id="XP_032509443.1"
                     /db_xref="GeneID:116764717"
                     /translation="MLFFTLLLEVIWTLAANGGQHWTYDGPHGQDHWPASYPECGSNA
                     QSPINIQTGSVTFNPELLPLQPHGYEQPGTEPLDLHNNGHTVQLSLPPTLYLEGLPRK
                     YVAAQLHLHWGQKGSPGGSEHQINGEATAAELHIVHYDSDSYESLSEAAQRPQGLAVL
                     GILIEVGETKNPAYEHILSHLHEIRHKDQKTSVPPFNLRELFPPLLAQYFRYNGSLTT
                     PPCYQSVLWTVFSRRAQISTGQLEKLQETLFSTEEEPSKLLVQNYRAPQPLNQRTVFA
                     SFIQVGSLYTTGEMLSLGVGILVGCLCLLLAIYFIARKIRKKRLGNRKSVVFTSARAT
                     EA"
     misc_feature    923..1672
                     /gene="CA14"
                     /note="Carbonic anhydrase alpha (vertebrate-like) group.
                     Carbonic anhydrases (CAs) are zinc-containing enzymes that
                     catalyze the reversible hydration of carbon dioxide in a
                     two-step mechanism: a nucleophilic attack of a zinc-bound
                     hydroxide ion on carbon...; Region: alpha_CA; cl00012"
                     /db_xref="CDD:469577"
     misc_feature    order(1088..1090,1157..1159,1163..1165,1169..1171,
                     1202..1204,1241..1243,1487..1489)
                     /gene="CA14"
                     /note="active site"
                     /db_xref="CDD:238200"
     misc_feature    order(1163..1165,1169..1171,1241..1243)
                     /gene="CA14"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:238200"
ORIGIN      
        1 gcctcacttc tcttccttat tttccacacc ccacgttctg gtccttgact tcctcccctc
       61 cacccgcacc ctgagtctcc cagctccttc tcgtttacct ctctcctaac tctgcactct
      121 tcctattcca gggtgctcac attctgcagg gcgtggggaa cgggtcctcc caccatctgc
      181 cctacaccat ccagggagtt gctcctcaga ggagaagcca gatggggaat aagaacccct
      241 gagggagctg gatgggaccc caaaggatcg gacccccaaa ccctccgttc ctgcccccgc
      301 ccattccagt gtctgtgtga atagcagagg aaggaagagc tcaccccagc tgcgctcctg
      361 agccagggcc agggcccctg tgaaacccac tgcgctgcgc tctgagcaag gccatcctgc
      421 atgcttaatc ggctatttaa ggagctgttc gccaacaacc cagacagtcc ccactctcca
      481 cgtacacccg tccagagcca ccttaaaagc gggaggcaat tgtgaagtag ctggccagca
      541 agtggagtga agactgcaga gggagataaa aaagagaggg cagaaagaga ggcagagaga
      601 gatttatcct ggggacccag aaactcacgg taccccactg aaaaccaaat cccctggaag
      661 cccgcagagg cacaaagaaa gcaagagaaa aagataaata cactcaactc caggaaactt
      721 ctcttctctc tctcccaccc ctccgcctct ctctctcccc tcctgtcttc ccctctctcc
      781 ctgccctagt cctctagtcc ccaaactccc agtaccttgt gtttcttcca gggataccat
      841 gttgttcttc acgctcctgc tagaggtgat ttggaccctg gctgccaacg ggggtcaaca
      901 ctggacatat gacggtccac atggtcaaga ccactggcca gcctcttacc ctgagtgtgg
      961 aagcaacgcc cagtccccca tcaacattca gacaggcagt gtgactttta accctgagtt
     1021 gctacctctg cagccccatg gatatgaaca gcctggcacc gagcctttgg acctgcacaa
     1081 taatggccac acagtgcaac tctctctgcc ccctaccctg tatctggaag gacttccccg
     1141 aaaatacgta gctgcccagc tccacctgca ctggggtcag aaaggatccc cgggggggtc
     1201 agagcaccag atcaatggcg aagccacagc tgcagagctc cacatcgtac attatgattc
     1261 tgattcctac gaaagcttaa gtgaggctgc tcagaggcct cagggcctgg ctgtcttggg
     1321 catcctcatt gaggtgggtg agactaagaa tccagcttat gaacacattc tgagtcactt
     1381 gcatgaaatc aggcataaag atcagaagac ctcagtgcct cccttcaacc tgagagagtt
     1441 gttcccgcca ctgctggcac agtacttccg ttacaatggc tcgctcacca caccgccctg
     1501 ctaccagagt gtgctctgga cagtcttcag tcgaagggcc cagatttcaa caggacagct
     1561 ggaaaagctt caagagacac tgttctccac ggaagaggag ccctctaagc tcctggtaca
     1621 gaactaccga gccccccagc ctctcaatca gcgaacggtc tttgcttcgt tcatccaagt
     1681 gggatccttg tataccacag gtgaaatgct gagtctggga gtgggaatcc tggttggctg
     1741 tctctgcctt ctgctggcta tttatttcat tgctagaaag attcggaaga agagactggg
     1801 aaaccggaaa agtgtggtct tcacctcagc acgagccacc gaggcataga ctccttcccg
     1861 gtcaccacag atggcttccc ctcgcctatc agggagcttc taaagtgggg tgctgggact
     1921 ggccagaaaa tactgtagga gtaggctgac atccctcctt cctccagaca gcccctacac
     1981 agaggtatgg acaggctctc attcaaggaa gaacagaacc ttcagcctct caaaacatgt
     2041 agataaggac agccctatgt tgacaatgca gagggtgaac tgtgtttagt tgtaggggaa
     2101 gctggggatg tgccccaaag tcccccaccc cctcatcttt gtatccctgt cccgagatat
     2161 agtacaagat ctccccttag gaaaaagggt tgctgctgct atgttttttt ccctcaatat
     2221 attaggaaat taaatttgcc gactcc
//
LOCUS       XM_032653563            4963 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 1
            (TOR1AIP1), transcript variant X1, mRNA.
ACCESSION   XM_032653563
VERSION     XM_032653563.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4963
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4963
                     /gene="TOR1AIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764724"
     CDS             1326..3215
                     /gene="TOR1AIP1"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 1 isoform X1"
                     /protein_id="XP_032509454.1"
                     /db_xref="GeneID:116764724"
                     /translation="MAGEGWRAEPEKEGWGLYVTPRAPLREARPRLAPQNGGGSDAPA
                     YGTPTPSRHGRREVRFSEEPPEVYGDFEPRAAKEKAPVGRQIPLEEFRPDSAKEEVRE
                     RSYYLRSRQRRQPRLQEAEMKTRRATRLQQQQHSQPPPLQPSPITTRRGLRDSHLSEE
                     DEPPSQTVLSPTVSKNTLRRTQTPVVSKDPVIGLCRPPLRSSRFDSSYKTNGNTKMSE
                     LESEFELFQEATSVQQKVNFSEEGEMEENDQDSSDSDVTVVKVRSEDSVESGDQTTRS
                     SSQYPESFWQSSQSRDFTAYDKQPLALSSGYQKNPQEWVEQTTKIRTRMQTVKYYRTP
                     SSPGNRSIYGSFSDDDGVQKSELGNQSPSTSSQQVTGQPQSASFVKVNWWWPLVLIAA
                     LLIGCFLYTRTPEAETTAVQEFQNQMKQLMNKYQGQDEKLWKRSLTFLEKHLNSSHPR
                     PQPAILLLTAARDAEEALKCLSEQIADAYSSFQSVPAIRIDGTGKATQDSDVVKREVD
                     EELSTGFRNGQNAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEETLA
                     TSLGLKEIEEKVRDFLKVKFTNSDTPNSYKHMDPDKLSGLWSRISHLVLPVQPENDLK
                     RGICL"
     misc_feature    1764..2513
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2523..3212
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 tgaacacctt aagatttcac taaattgaaa tctgtgccca gtttggacaa atgagttgct
       61 caaaaacatt ctaaagtgat tttaaataca ggaaagaata aacaaatacc ttcaaaattt
      121 tcaggctcgt tcattataat tgctatccaa attgcaactt tttaaatcta gtcactaaaa
      181 tcaattatag aaagccgtcc aagaagtgtg tgtatatttg aaggcaagat taatcttttt
      241 tcaataattg ttcagacttt atactaaatt aacattccct cagtgtctaa atttggttag
      301 atatttgcag attatccaca tctgcaaata cgatacacag aggtggaaca taggctttta
      361 tcatgctttc ttattcagta aactaaacgc aggaaaaccc tatatcaaat gcagtatatc
      421 aaatcatgcc cagaatcaaa gtaaaaataa tggatcacaa gtgaaaatta cagtgccgtc
      481 attaaagtac ttgttcattt ctcactgtcc ataacacagc actagcaagc tttctgaaca
      541 gtgctgctgg actacagctt ttatacgaaa ccaggaataa gactgcttgc tatgcgcaca
      601 ttttgcaaat gttaatccac cccagtatgc ctgtagatcc gatttcgtac actcaacgag
      661 gcacttaaaa cttaaaaagt ggttaaatgc cttcccaagg accttgaaac taaaattttc
      721 tccaagatga cacctacaaa agtatctttc ttatcaaccc ctgctaagaa acactcggaa
      781 aggtacggcg gaggcagcag tcgatcagag gctgcgggaa aactgcgcaa cagcctgggg
      841 gtgaggaccg aaacttcccc tccactctgc ctttcccagg ttctcggtac tgggggactg
      901 gccggacgtc tcctgcgtgc cggcaacagt tgccaggagc agcgggctga gtaccggcac
      961 tctgcccaac cagtggtctc ttctccgtcg tcccctcctt ccctccctga aggctgagga
     1021 cagcgacgtc ctcctccctc ttctcctcct ctttggtgcc ttcagccagg aggcgggagt
     1081 gacccgcggc agctgaccca gcacaggcac tgcctctccc acagccctca gaacacacga
     1141 tgggcccaga ggcgggtttg cagcacagca gcgacgacgc aggcggcagc cccagcgact
     1201 ctcaactgcc tccctgaccg tcgacaccac tgccgaacac ccgaaaaacc atcgccacca
     1261 acggcgagag actctacagg ccctccaaaa caccttctcg atcaactcaa gctacgtcaa
     1321 caactatggc aggcgagggg tggcgggcgg agccggagaa ggaaggatgg gggctgtacg
     1381 tcacgcccag ggctccgcta cgggaggcga ggccccggct cgcccctcaa aatggcggcg
     1441 gcagtgacgc gcctgcgtat ggtactccta cgccgtcgcg ccacggccgg cgggaagtga
     1501 ggttctcaga agagccgccc gaagtgtacg gcgacttcga gccccgggcg gccaaagaaa
     1561 aggccccggt gggaagacaa attccgctag aagagttccg gcccgattcg gcgaaagagg
     1621 aagtgagaga acgctcctat taccttcggt ctcggcagcg gaggcagccg cgactccagg
     1681 aagccgagat gaagacgcga agggctactc gccttcagca gcagcagcac tcacagccgc
     1741 ctccgctgca gccgtctccg attacgaccc ggagaggatt acgggactcc catttatccg
     1801 aagaggatga accaccttca caaactgttt taagcccaac tgtctcaaag aatactctca
     1861 ggagaacaca gactccagtg gtgagtaaag atcctgtaat cggcctgtgt agaccccctc
     1921 taagaagctc aagatttgat tcgtcatata aaacaaatgg aaatactaaa atgagtgaat
     1981 tagaaagtga atttgagctt tttcaagaag ccaccagtgt ccaacagaag gtcaatttct
     2041 cagaagaagg ggaaatggag gaaaatgatc aagacagctc tgacagtgat gttacggttg
     2101 ttaaggtcag atccgaggat tctgttgagt ccggagacca aaccaccaga tcatcaagtc
     2161 aatatccaga atcattttgg cagtcatcac aaagtcgaga cttcacagct tatgataagc
     2221 aaccattagc gctaagctcg ggatatcaaa aaaatcctca ggaatgggtt gaacaaacca
     2281 caaaaataag gactaggatg caaacagtga agtattaccg tacaccatca tcaccaggca
     2341 atcgttcgat atatggcagt ttttcagatg atgacggtgt tcagaaatca gagcttggaa
     2401 accaatctcc atcaacctcc agccaacaag tgactggaca accccaaagt gcatcttttg
     2461 tcaaggtgaa ctggtggtgg ccccttgttc tgatagctgc gcttctcatt gggtgttttt
     2521 tgtacactcg tactcctgaa gcagaaacca ctgctgttca agagttccag aaccagatga
     2581 aacaacttat gaataagtac caaggtcaag atgagaagct gtggaaaagg agcctaacat
     2641 tcctggaaaa acatcttaat agctcccacc ctcggcctca gcctgctatc ttgctgctca
     2701 ctgctgcccg agatgctgaa gaagcactca agtgtctgag tgaacaaatt gccgatgcct
     2761 attcttcctt ccaaagtgtt cctgcaatcc ggattgatgg gacgggcaaa gcaactcaag
     2821 acagtgatgt tgtcaaacga gaggtagatg aggagctgag cacaggattc cgaaatggcc
     2881 agaatgcagc tgtggtccac cgctttgagt cactgcctgc aggctctact ttgatcttct
     2941 ataagtattg tgatcatgaa aatgcagcct tcaaagatgt agccttagtc ctaactgtct
     3001 tgttagagga ggagacactt gcaaccagtc taggcctaaa ggaaattgaa gaaaaagtga
     3061 gggatttcct caaagtcaag ttcaccaact ctgatacacc caactcctac aaacatatgg
     3121 acccagacaa attgagtggg ctctggagcc gtatttctca cttagtcctg ccagtacaac
     3181 ctgaaaatga cctgaaaagg ggcatctgct tataagagga gacagaagag aaaatcatgt
     3241 ctcaagttct gagaattttt caaactttct aaccatagac aggatccaga gctctttttg
     3301 aaagaactgg tttcttttta aaggaggtta agttcttagg taaacgtggg atatgtaaat
     3361 cgtttattca acctaattat ctgttttttg agagaatcgt ttccttgttt ccattgaggt
     3421 ctgtgttaat gatatctgag gactgtaaat tatatgcagt cccatagagg atcgattctg
     3481 ggttgaatca ttattgctat ggtatgacca gtgggaggga ttaggctcct tcctatgaat
     3541 ccacccaatt ttttaactta gatttttttc acagtttgtc gagttattag taagacagct
     3601 ccctgaacat aactgtgggt tttccctttt gtcctcttct acatcgttta gatgtgaatt
     3661 ctgtagtcag cttctgctta taggaacaaa aataatgaaa ggccatccaa gtgtgtgttt
     3721 gggatttttg ggttttgttt ttttcctttg attttggagg gcaaggagaa ggagacatgg
     3781 gaaaagttgt ggaatgggga gagaaagggg ggaaaaagtc ttcaaggtga aatgttaaaa
     3841 taagccactg agggaattcc ctggcggtcc agtggttagg actccacact ttcaatgccg
     3901 agggcccagg tttgatccct ggtcagggaa ctaagatcct gcaagctgtc ccacgtggcc
     3961 agaaagaaag ccactgaggc ttagggttag tcaaacatag ttatatgaac tgcattctca
     4021 gtgaattctg ttgggacttg tttttcacat gtcctttttt ttcctttcag aaatttttat
     4081 tcctcccaga gattctgaag catgtatatg atgaggttta gtatgtttgt tcacttggct
     4141 cttaagaatg ggtaagttca gagccattta ttttggtcat atcctgaaag ttttgttaag
     4201 aaatacaatt tcaggaattg gtaaaccatt tgttaaccag ctctcctggg ctgttgaaga
     4261 aggatttgat tttctgcatg tctacttgtt gcattctgag tcctttaatg acacttttgt
     4321 aacaagagta aagatttaca atgcacatga taaattctac taagagtgcc tcaagcgaaa
     4381 aagaaagtga agtttaccat atatgaagaa tgttaaaatg tactattgta cattactgta
     4441 ctactataga atttcagttt taacttagca tcactaacag ctttctcatc cgtcaactgc
     4501 tttggttttc ttagaagctt aaaattctgg atccacttta tttttttatt gtctacaaac
     4561 ctttaaatga aaatattgtt tttagaatac tggagcccgt caatggcttc atcatttacc
     4621 ttttaaggat cccatgactg gtggtagagt acagtctcgt ttcttcccac taggactacc
     4681 agtattcata aatttatacc ccttattgta atttgttcct gactgtcaga agtcaaatat
     4741 tctgatttat agaggattct aaaacaagag tttttgaaaa gacttatttt atacctatat
     4801 atattatatg gagaaacatg tttttttaaa tgtttcattg accaaaataa ttttaaagta
     4861 attaatatta cttatatcag gaaaaataat tgtagcagct gatctgtaaa tgactttaaa
     4921 agctatttta gtaatttaaa taaatttact ttcttggttt gta
//
LOCUS       XM_032653573            4929 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 1
            (TOR1AIP1), transcript variant X2, mRNA.
ACCESSION   XM_032653573
VERSION     XM_032653573.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4929
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4929
                     /gene="TOR1AIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764724"
     CDS             1313..3181
                     /gene="TOR1AIP1"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 1 isoform X2"
                     /protein_id="XP_032509464.1"
                     /db_xref="GeneID:116764724"
                     /translation="MAGEGWRAEPEKEGWGLYVTPRAPLREARPRLAPQNGGGSDAPA
                     YGTPTPSRHGRREVRFSEEPPEVYGDFEPRAAKEKAPVGRQIPLEEFRPDSAKEEVRE
                     RSYYLRSRQRRQPRLQEAEMKTRRATRLQQQQHSQPPPLQPSPITTRRGLRDSHLSEE
                     DEPPSQTVLSPTVSKNTLRRTQTPVVSKDPVIGLCRPPLRSSRFDSSYKTNGNTKMSE
                     LESEFELFQEATSVQQKVNFSEEGEMEENDQDSSDSDVTVVKVRSEDSVESGDQTTRS
                     SSQYPESFWQSSQSRDFTAYDKQPLALSSGYQKNPQEWVEQTTKIRTRMQTSSPGNRS
                     IYGSFSDDDGVQKSELGNQSPSTSSQQVTGQPQSASFVKVNWWWPLVLIAALLIGCFL
                     YTRTPEAETTAVQEFQNQMKQLMNKYQGQDEKLWKRSLTFLEKHLNSSHPRPQPAILL
                     LTAARDAEEALKCLSEQIADAYSSFQSVPAIRIDGTGKATQDSDVVKREVDEELSTGF
                     RNGQNAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEETLATSLGLKE
                     IEEKVRDFLKVKFTNSDTPNSYKHMDPDKLSGLWSRISHLVLPVQPENDLKRGICL"
     misc_feature    1751..2479
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2489..3178
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 atttcactaa attgaaatct gtgcccagtt tggacaaatg agttgctcaa aaacattcta
       61 aagtgatttt aaatacagga aagaataaac aaataccttc aaaattttca ggctcgttca
      121 ttataattgc tatccaaatt gcaacttttt aaatctagtc actaaaatca attatagaaa
      181 gccgtccaag aagtgtgtgt atatttgaag gcaagattaa tcttttttca ataattgttc
      241 agactttata ctaaattaac attccctcag tgtctaaatt tggttagata tttgcagatt
      301 atccacatct gcaaatacga tacacagagg tggaacatag gcttttatca tgctttctta
      361 ttcagtaaac taaacgcagg aaaaccctat atcaaatgca gtatatcaaa tcatgcccag
      421 aatcaaagta aaaataatgg atcacaagtg aaaattacag tgccgtcatt aaagtacttg
      481 ttcatttctc actgtccata acacagcact agcaagcttt ctgaacagtg ctgctggact
      541 acagctttta tacgaaacca ggaataagac tgcttgctat gcgcacattt tgcaaatgtt
      601 aatccacccc agtatgcctg tagatccgat ttcgtacact caacgaggca cttaaaactt
      661 aaaaagtggt taaatgcctt cccaaggacc ttgaaactaa aattttctcc aagatgacac
      721 ctacaaaagt atctttctta tcaacccctg ctaagaaaca ctcggaaagg tacggcggag
      781 gcagcagtcg atcagaggct gcgggaaaac tgcgcaacag cctgggggtg aggaccgaaa
      841 cttcccctcc actctgcctt tcccaggttc tcggtactgg gggactggcc ggacgtctcc
      901 tgcgtgccgg caacagttgc caggagcagc gggctgagta ccggcactct gcccaaccag
      961 tggtctcttc tccgtcgtcc cctccttccc tccctgaagg ctgaggacag cgacgtcctc
     1021 ctccctcttc tcctcctctt tggtgccttc agccaggagg cgggagtgac ccgcggcagc
     1081 tgacccagca caggcactgc ctctcccaca gccctcagaa cacacgatgg gcccagaggc
     1141 gggtttgcag cacagcagcg acgacgcagg cggcagcccc agcgactctc aactgcctcc
     1201 ctgaccgtcg acaccactgc cgaacacccg aaaaaccatc gccaccaacg gcgagagact
     1261 ctacaggccc tccaaaacac cttctcgatc aactcaagct acgtcaacaa ctatggcagg
     1321 cgaggggtgg cgggcggagc cggagaagga aggatggggg ctgtacgtca cgcccagggc
     1381 tccgctacgg gaggcgaggc cccggctcgc ccctcaaaat ggcggcggca gtgacgcgcc
     1441 tgcgtatggt actcctacgc cgtcgcgcca cggccggcgg gaagtgaggt tctcagaaga
     1501 gccgcccgaa gtgtacggcg acttcgagcc ccgggcggcc aaagaaaagg ccccggtggg
     1561 aagacaaatt ccgctagaag agttccggcc cgattcggcg aaagaggaag tgagagaacg
     1621 ctcctattac cttcggtctc ggcagcggag gcagccgcga ctccaggaag ccgagatgaa
     1681 gacgcgaagg gctactcgcc ttcagcagca gcagcactca cagccgcctc cgctgcagcc
     1741 gtctccgatt acgacccgga gaggattacg ggactcccat ttatccgaag aggatgaacc
     1801 accttcacaa actgttttaa gcccaactgt ctcaaagaat actctcagga gaacacagac
     1861 tccagtggtg agtaaagatc ctgtaatcgg cctgtgtaga ccccctctaa gaagctcaag
     1921 atttgattcg tcatataaaa caaatggaaa tactaaaatg agtgaattag aaagtgaatt
     1981 tgagcttttt caagaagcca ccagtgtcca acagaaggtc aatttctcag aagaagggga
     2041 aatggaggaa aatgatcaag acagctctga cagtgatgtt acggttgtta aggtcagatc
     2101 cgaggattct gttgagtccg gagaccaaac caccagatca tcaagtcaat atccagaatc
     2161 attttggcag tcatcacaaa gtcgagactt cacagcttat gataagcaac cattagcgct
     2221 aagctcggga tatcaaaaaa atcctcagga atgggttgaa caaaccacaa aaataaggac
     2281 taggatgcaa acatcatcac caggcaatcg ttcgatatat ggcagttttt cagatgatga
     2341 cggtgttcag aaatcagagc ttggaaacca atctccatca acctccagcc aacaagtgac
     2401 tggacaaccc caaagtgcat cttttgtcaa ggtgaactgg tggtggcccc ttgttctgat
     2461 agctgcgctt ctcattgggt gttttttgta cactcgtact cctgaagcag aaaccactgc
     2521 tgttcaagag ttccagaacc agatgaaaca acttatgaat aagtaccaag gtcaagatga
     2581 gaagctgtgg aaaaggagcc taacattcct ggaaaaacat cttaatagct cccaccctcg
     2641 gcctcagcct gctatcttgc tgctcactgc tgcccgagat gctgaagaag cactcaagtg
     2701 tctgagtgaa caaattgccg atgcctattc ttccttccaa agtgttcctg caatccggat
     2761 tgatgggacg ggcaaagcaa ctcaagacag tgatgttgtc aaacgagagg tagatgagga
     2821 gctgagcaca ggattccgaa atggccagaa tgcagctgtg gtccaccgct ttgagtcact
     2881 gcctgcaggc tctactttga tcttctataa gtattgtgat catgaaaatg cagccttcaa
     2941 agatgtagcc ttagtcctaa ctgtcttgtt agaggaggag acacttgcaa ccagtctagg
     3001 cctaaaggaa attgaagaaa aagtgaggga tttcctcaaa gtcaagttca ccaactctga
     3061 tacacccaac tcctacaaac atatggaccc agacaaattg agtgggctct ggagccgtat
     3121 ttctcactta gtcctgccag tacaacctga aaatgacctg aaaaggggca tctgcttata
     3181 agaggagaca gaagagaaaa tcatgtctca agttctgaga atttttcaaa ctttctaacc
     3241 atagacagga tccagagctc tttttgaaag aactggtttc tttttaaagg aggttaagtt
     3301 cttaggtaaa cgtgggatat gtaaatcgtt tattcaacct aattatctgt tttttgagag
     3361 aatcgtttcc ttgtttccat tgaggtctgt gttaatgata tctgaggact gtaaattata
     3421 tgcagtccca tagaggatcg attctgggtt gaatcattat tgctatggta tgaccagtgg
     3481 gagggattag gctccttcct atgaatccac ccaatttttt aacttagatt tttttcacag
     3541 tttgtcgagt tattagtaag acagctccct gaacataact gtgggttttc ccttttgtcc
     3601 tcttctacat cgtttagatg tgaattctgt agtcagcttc tgcttatagg aacaaaaata
     3661 atgaaaggcc atccaagtgt gtgtttggga tttttgggtt ttgttttttt cctttgattt
     3721 tggagggcaa ggagaaggag acatgggaaa agttgtggaa tggggagaga aaggggggaa
     3781 aaagtcttca aggtgaaatg ttaaaataag ccactgaggg aattccctgg cggtccagtg
     3841 gttaggactc cacactttca atgccgaggg cccaggtttg atccctggtc agggaactaa
     3901 gatcctgcaa gctgtcccac gtggccagaa agaaagccac tgaggcttag ggttagtcaa
     3961 acatagttat atgaactgca ttctcagtga attctgttgg gacttgtttt tcacatgtcc
     4021 ttttttttcc tttcagaaat ttttattcct cccagagatt ctgaagcatg tatatgatga
     4081 ggtttagtat gtttgttcac ttggctctta agaatgggta agttcagagc catttatttt
     4141 ggtcatatcc tgaaagtttt gttaagaaat acaatttcag gaattggtaa accatttgtt
     4201 aaccagctct cctgggctgt tgaagaagga tttgattttc tgcatgtcta cttgttgcat
     4261 tctgagtcct ttaatgacac ttttgtaaca agagtaaaga tttacaatgc acatgataaa
     4321 ttctactaag agtgcctcaa gcgaaaaaga aagtgaagtt taccatatat gaagaatgtt
     4381 aaaatgtact attgtacatt actgtactac tatagaattt cagttttaac ttagcatcac
     4441 taacagcttt ctcatccgtc aactgctttg gttttcttag aagcttaaaa ttctggatcc
     4501 actttatttt tttattgtct acaaaccttt aaatgaaaat attgttttta gaatactgga
     4561 gcccgtcaat ggcttcatca tttacctttt aaggatccca tgactggtgg tagagtacag
     4621 tctcgtttct tcccactagg actaccagta ttcataaatt tatacccctt attgtaattt
     4681 gttcctgact gtcagaagtc aaatattctg atttatagag gattctaaaa caagagtttt
     4741 tgaaaagact tattttatac ctatatatat tatatggaga aacatgtttt tttaaatgtt
     4801 tcattgacca aaataatttt aaagtaatta atattactta tatcaggaaa aataattgta
     4861 gcagctgatc tgtaaatgac tttaaaagct attttagtaa tttaaataaa tttactttct
     4921 tggtttgta
//
LOCUS       XM_032653581            4934 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 1
            (TOR1AIP1), transcript variant X3, mRNA.
ACCESSION   XM_032653581
VERSION     XM_032653581.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4934
                     /gene="TOR1AIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764724"
     CDS             1321..3186
                     /gene="TOR1AIP1"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 1 isoform X3"
                     /protein_id="XP_032509472.1"
                     /db_xref="GeneID:116764724"
                     /translation="MAGEGWRAEPEKEGWGLYVTPRAPLREARPRLAPQNGGGSDAPA
                     YGTPTPSRHGRREVRFSEEPPEVYGDFEPRAAKEKAPVGRQIPLEEFRPDSAKEEVRE
                     RSYYLRSRQRRQPRLQEAEMKTRRATRLQQQQHSQPPPLQPSPITTRRGLRDSHLSEE
                     DEPPSQTVLSPTVSKNTLRRTQTPVVSKDPVIGLCRPPLRSSRFDSSYKTNGNTKMSE
                     LEATSVQQKVNFSEEGEMEENDQDSSDSDVTVVKVRSEDSVESGDQTTRSSSQYPESF
                     WQSSQSRDFTAYDKQPLALSSGYQKNPQEWVEQTTKIRTRMQTVKYYRTPSSPGNRSI
                     YGSFSDDDGVQKSELGNQSPSTSSQQVTGQPQSASFVKVNWWWPLVLIAALLIGCFLY
                     TRTPEAETTAVQEFQNQMKQLMNKYQGQDEKLWKRSLTFLEKHLNSSHPRPQPAILLL
                     TAARDAEEALKCLSEQIADAYSSFQSVPAIRIDGTGKATQDSDVVKREVDEELSTGFR
                     NGQNAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEETLATSLGLKEI
                     EEKVRDFLKVKFTNSDTPNSYKHMDPDKLSGLWSRISHLVLPVQPENDLKRGICL"
     misc_feature    1759..2484
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2494..3183
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 accttaagat ttcactaaat tgaaatctgt gcccagtttg gacaaatgag ttgctcaaaa
       61 acattctaaa gtgattttaa atacaggaaa gaataaacaa ataccttcaa aattttcagg
      121 ctcgttcatt ataattgcta tccaaattgc aactttttaa atctagtcac taaaatcaat
      181 tatagaaagc cgtccaagaa gtgtgtgtat atttgaaggc aagattaatc ttttttcaat
      241 aattgttcag actttatact aaattaacat tccctcagtg tctaaatttg gttagatatt
      301 tgcagattat ccacatctgc aaatacgata cacagaggtg gaacataggc ttttatcatg
      361 ctttcttatt cagtaaacta aacgcaggaa aaccctatat caaatgcagt atatcaaatc
      421 atgcccagaa tcaaagtaaa aataatggat cacaagtgaa aattacagtg ccgtcattaa
      481 agtacttgtt catttctcac tgtccataac acagcactag caagctttct gaacagtgct
      541 gctggactac agcttttata cgaaaccagg aataagactg cttgctatgc gcacattttg
      601 caaatgttaa tccaccccag tatgcctgta gatccgattt cgtacactca acgaggcact
      661 taaaacttaa aaagtggtta aatgccttcc caaggacctt gaaactaaaa ttttctccaa
      721 gatgacacct acaaaagtat ctttcttatc aacccctgct aagaaacact cggaaaggta
      781 cggcggaggc agcagtcgat cagaggctgc gggaaaactg cgcaacagcc tgggggtgag
      841 gaccgaaact tcccctccac tctgcctttc ccaggttctc ggtactgggg gactggccgg
      901 acgtctcctg cgtgccggca acagttgcca ggagcagcgg gctgagtacc ggcactctgc
      961 ccaaccagtg gtctcttctc cgtcgtcccc tccttccctc cctgaaggct gaggacagcg
     1021 acgtcctcct ccctcttctc ctcctctttg gtgccttcag ccaggaggcg ggagtgaccc
     1081 gcggcagctg acccagcaca ggcactgcct ctcccacagc cctcagaaca cacgatgggc
     1141 ccagaggcgg gtttgcagca cagcagcgac gacgcaggcg gcagccccag cgactctcaa
     1201 ctgcctccct gaccgtcgac accactgccg aacacccgaa aaaccatcgc caccaacggc
     1261 gagagactct acaggccctc caaaacacct tctcgatcaa ctcaagctac gtcaacaact
     1321 atggcaggcg aggggtggcg ggcggagccg gagaaggaag gatgggggct gtacgtcacg
     1381 cccagggctc cgctacggga ggcgaggccc cggctcgccc ctcaaaatgg cggcggcagt
     1441 gacgcgcctg cgtatggtac tcctacgccg tcgcgccacg gccggcggga agtgaggttc
     1501 tcagaagagc cgcccgaagt gtacggcgac ttcgagcccc gggcggccaa agaaaaggcc
     1561 ccggtgggaa gacaaattcc gctagaagag ttccggcccg attcggcgaa agaggaagtg
     1621 agagaacgct cctattacct tcggtctcgg cagcggaggc agccgcgact ccaggaagcc
     1681 gagatgaaga cgcgaagggc tactcgcctt cagcagcagc agcactcaca gccgcctccg
     1741 ctgcagccgt ctccgattac gacccggaga ggattacggg actcccattt atccgaagag
     1801 gatgaaccac cttcacaaac tgttttaagc ccaactgtct caaagaatac tctcaggaga
     1861 acacagactc cagtggtgag taaagatcct gtaatcggcc tgtgtagacc ccctctaaga
     1921 agctcaagat ttgattcgtc atataaaaca aatggaaata ctaaaatgag tgaattagaa
     1981 gccaccagtg tccaacagaa ggtcaatttc tcagaagaag gggaaatgga ggaaaatgat
     2041 caagacagct ctgacagtga tgttacggtt gttaaggtca gatccgagga ttctgttgag
     2101 tccggagacc aaaccaccag atcatcaagt caatatccag aatcattttg gcagtcatca
     2161 caaagtcgag acttcacagc ttatgataag caaccattag cgctaagctc gggatatcaa
     2221 aaaaatcctc aggaatgggt tgaacaaacc acaaaaataa ggactaggat gcaaacagtg
     2281 aagtattacc gtacaccatc atcaccaggc aatcgttcga tatatggcag tttttcagat
     2341 gatgacggtg ttcagaaatc agagcttgga aaccaatctc catcaacctc cagccaacaa
     2401 gtgactggac aaccccaaag tgcatctttt gtcaaggtga actggtggtg gccccttgtt
     2461 ctgatagctg cgcttctcat tgggtgtttt ttgtacactc gtactcctga agcagaaacc
     2521 actgctgttc aagagttcca gaaccagatg aaacaactta tgaataagta ccaaggtcaa
     2581 gatgagaagc tgtggaaaag gagcctaaca ttcctggaaa aacatcttaa tagctcccac
     2641 cctcggcctc agcctgctat cttgctgctc actgctgccc gagatgctga agaagcactc
     2701 aagtgtctga gtgaacaaat tgccgatgcc tattcttcct tccaaagtgt tcctgcaatc
     2761 cggattgatg ggacgggcaa agcaactcaa gacagtgatg ttgtcaaacg agaggtagat
     2821 gaggagctga gcacaggatt ccgaaatggc cagaatgcag ctgtggtcca ccgctttgag
     2881 tcactgcctg caggctctac tttgatcttc tataagtatt gtgatcatga aaatgcagcc
     2941 ttcaaagatg tagccttagt cctaactgtc ttgttagagg aggagacact tgcaaccagt
     3001 ctaggcctaa aggaaattga agaaaaagtg agggatttcc tcaaagtcaa gttcaccaac
     3061 tctgatacac ccaactccta caaacatatg gacccagaca aattgagtgg gctctggagc
     3121 cgtatttctc acttagtcct gccagtacaa cctgaaaatg acctgaaaag gggcatctgc
     3181 ttataagagg agacagaaga gaaaatcatg tctcaagttc tgagaatttt tcaaactttc
     3241 taaccataga caggatccag agctcttttt gaaagaactg gtttcttttt aaaggaggtt
     3301 aagttcttag gtaaacgtgg gatatgtaaa tcgtttattc aacctaatta tctgtttttt
     3361 gagagaatcg tttccttgtt tccattgagg tctgtgttaa tgatatctga ggactgtaaa
     3421 ttatatgcag tcccatagag gatcgattct gggttgaatc attattgcta tggtatgacc
     3481 agtgggaggg attaggctcc ttcctatgaa tccacccaat tttttaactt agattttttt
     3541 cacagtttgt cgagttatta gtaagacagc tccctgaaca taactgtggg ttttcccttt
     3601 tgtcctcttc tacatcgttt agatgtgaat tctgtagtca gcttctgctt ataggaacaa
     3661 aaataatgaa aggccatcca agtgtgtgtt tgggattttt gggttttgtt tttttccttt
     3721 gattttggag ggcaaggaga aggagacatg ggaaaagttg tggaatgggg agagaaaggg
     3781 gggaaaaagt cttcaaggtg aaatgttaaa ataagccact gagggaattc cctggcggtc
     3841 cagtggttag gactccacac tttcaatgcc gagggcccag gtttgatccc tggtcaggga
     3901 actaagatcc tgcaagctgt cccacgtggc cagaaagaaa gccactgagg cttagggtta
     3961 gtcaaacata gttatatgaa ctgcattctc agtgaattct gttgggactt gtttttcaca
     4021 tgtccttttt tttcctttca gaaattttta ttcctcccag agattctgaa gcatgtatat
     4081 gatgaggttt agtatgtttg ttcacttggc tcttaagaat gggtaagttc agagccattt
     4141 attttggtca tatcctgaaa gttttgttaa gaaatacaat ttcaggaatt ggtaaaccat
     4201 ttgttaacca gctctcctgg gctgttgaag aaggatttga ttttctgcat gtctacttgt
     4261 tgcattctga gtcctttaat gacacttttg taacaagagt aaagatttac aatgcacatg
     4321 ataaattcta ctaagagtgc ctcaagcgaa aaagaaagtg aagtttacca tatatgaaga
     4381 atgttaaaat gtactattgt acattactgt actactatag aatttcagtt ttaacttagc
     4441 atcactaaca gctttctcat ccgtcaactg ctttggtttt cttagaagct taaaattctg
     4501 gatccacttt atttttttat tgtctacaaa cctttaaatg aaaatattgt ttttagaata
     4561 ctggagcccg tcaatggctt catcatttac cttttaagga tcccatgact ggtggtagag
     4621 tacagtctcg tttcttccca ctaggactac cagtattcat aaatttatac cccttattgt
     4681 aatttgttcc tgactgtcag aagtcaaata ttctgattta tagaggattc taaaacaaga
     4741 gtttttgaaa agacttattt tatacctata tatattatat ggagaaacat gtttttttaa
     4801 atgtttcatt gaccaaaata attttaaagt aattaatatt acttatatca ggaaaaataa
     4861 ttgtagcagc tgatctgtaa atgactttaa aagctatttt agtaatttaa ataaatttac
     4921 tttcttggtt tgta
//
LOCUS       XM_032653590            4900 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 1
            (TOR1AIP1), transcript variant X4, mRNA.
ACCESSION   XM_032653590
VERSION     XM_032653590.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4900
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4900
                     /gene="TOR1AIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764724"
     CDS             1308..3152
                     /gene="TOR1AIP1"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 1 isoform X4"
                     /protein_id="XP_032509481.1"
                     /db_xref="GeneID:116764724"
                     /translation="MAGEGWRAEPEKEGWGLYVTPRAPLREARPRLAPQNGGGSDAPA
                     YGTPTPSRHGRREVRFSEEPPEVYGDFEPRAAKEKAPVGRQIPLEEFRPDSAKEEVRE
                     RSYYLRSRQRRQPRLQEAEMKTRRATRLQQQQHSQPPPLQPSPITTRRGLRDSHLSEE
                     DEPPSQTVLSPTVSKNTLRRTQTPVVSKDPVIGLCRPPLRSSRFDSSYKTNGNTKMSE
                     LEATSVQQKVNFSEEGEMEENDQDSSDSDVTVVKVRSEDSVESGDQTTRSSSQYPESF
                     WQSSQSRDFTAYDKQPLALSSGYQKNPQEWVEQTTKIRTRMQTSSPGNRSIYGSFSDD
                     DGVQKSELGNQSPSTSSQQVTGQPQSASFVKVNWWWPLVLIAALLIGCFLYTRTPEAE
                     TTAVQEFQNQMKQLMNKYQGQDEKLWKRSLTFLEKHLNSSHPRPQPAILLLTAARDAE
                     EALKCLSEQIADAYSSFQSVPAIRIDGTGKATQDSDVVKREVDEELSTGFRNGQNAAV
                     VHRFESLPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEETLATSLGLKEIEEKVRDF
                     LKVKFTNSDTPNSYKHMDPDKLSGLWSRISHLVLPVQPENDLKRGICL"
     misc_feature    1746..2450
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2460..3149
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 actaaattga aatctgtgcc cagtttggac aaatgagttg ctcaaaaaca ttctaaagtg
       61 attttaaata caggaaagaa taaacaaata ccttcaaaat tttcaggctc gttcattata
      121 attgctatcc aaattgcaac tttttaaatc tagtcactaa aatcaattat agaaagccgt
      181 ccaagaagtg tgtgtatatt tgaaggcaag attaatcttt tttcaataat tgttcagact
      241 ttatactaaa ttaacattcc ctcagtgtct aaatttggtt agatatttgc agattatcca
      301 catctgcaaa tacgatacac agaggtggaa cataggcttt tatcatgctt tcttattcag
      361 taaactaaac gcaggaaaac cctatatcaa atgcagtata tcaaatcatg cccagaatca
      421 aagtaaaaat aatggatcac aagtgaaaat tacagtgccg tcattaaagt acttgttcat
      481 ttctcactgt ccataacaca gcactagcaa gctttctgaa cagtgctgct ggactacagc
      541 ttttatacga aaccaggaat aagactgctt gctatgcgca cattttgcaa atgttaatcc
      601 accccagtat gcctgtagat ccgatttcgt acactcaacg aggcacttaa aacttaaaaa
      661 gtggttaaat gccttcccaa ggaccttgaa actaaaattt tctccaagat gacacctaca
      721 aaagtatctt tcttatcaac ccctgctaag aaacactcgg aaaggtacgg cggaggcagc
      781 agtcgatcag aggctgcggg aaaactgcgc aacagcctgg gggtgaggac cgaaacttcc
      841 cctccactct gcctttccca ggttctcggt actgggggac tggccggacg tctcctgcgt
      901 gccggcaaca gttgccagga gcagcgggct gagtaccggc actctgccca accagtggtc
      961 tcttctccgt cgtcccctcc ttccctccct gaaggctgag gacagcgacg tcctcctccc
     1021 tcttctcctc ctctttggtg ccttcagcca ggaggcggga gtgacccgcg gcagctgacc
     1081 cagcacaggc actgcctctc ccacagccct cagaacacac gatgggccca gaggcgggtt
     1141 tgcagcacag cagcgacgac gcaggcggca gccccagcga ctctcaactg cctccctgac
     1201 cgtcgacacc actgccgaac acccgaaaaa ccatcgccac caacggcgag agactctaca
     1261 ggccctccaa aacaccttct cgatcaactc aagctacgtc aacaactatg gcaggcgagg
     1321 ggtggcgggc ggagccggag aaggaaggat gggggctgta cgtcacgccc agggctccgc
     1381 tacgggaggc gaggccccgg ctcgcccctc aaaatggcgg cggcagtgac gcgcctgcgt
     1441 atggtactcc tacgccgtcg cgccacggcc ggcgggaagt gaggttctca gaagagccgc
     1501 ccgaagtgta cggcgacttc gagccccggg cggccaaaga aaaggccccg gtgggaagac
     1561 aaattccgct agaagagttc cggcccgatt cggcgaaaga ggaagtgaga gaacgctcct
     1621 attaccttcg gtctcggcag cggaggcagc cgcgactcca ggaagccgag atgaagacgc
     1681 gaagggctac tcgccttcag cagcagcagc actcacagcc gcctccgctg cagccgtctc
     1741 cgattacgac ccggagagga ttacgggact cccatttatc cgaagaggat gaaccacctt
     1801 cacaaactgt tttaagccca actgtctcaa agaatactct caggagaaca cagactccag
     1861 tggtgagtaa agatcctgta atcggcctgt gtagaccccc tctaagaagc tcaagatttg
     1921 attcgtcata taaaacaaat ggaaatacta aaatgagtga attagaagcc accagtgtcc
     1981 aacagaaggt caatttctca gaagaagggg aaatggagga aaatgatcaa gacagctctg
     2041 acagtgatgt tacggttgtt aaggtcagat ccgaggattc tgttgagtcc ggagaccaaa
     2101 ccaccagatc atcaagtcaa tatccagaat cattttggca gtcatcacaa agtcgagact
     2161 tcacagctta tgataagcaa ccattagcgc taagctcggg atatcaaaaa aatcctcagg
     2221 aatgggttga acaaaccaca aaaataagga ctaggatgca aacatcatca ccaggcaatc
     2281 gttcgatata tggcagtttt tcagatgatg acggtgttca gaaatcagag cttggaaacc
     2341 aatctccatc aacctccagc caacaagtga ctggacaacc ccaaagtgca tcttttgtca
     2401 aggtgaactg gtggtggccc cttgttctga tagctgcgct tctcattggg tgttttttgt
     2461 acactcgtac tcctgaagca gaaaccactg ctgttcaaga gttccagaac cagatgaaac
     2521 aacttatgaa taagtaccaa ggtcaagatg agaagctgtg gaaaaggagc ctaacattcc
     2581 tggaaaaaca tcttaatagc tcccaccctc ggcctcagcc tgctatcttg ctgctcactg
     2641 ctgcccgaga tgctgaagaa gcactcaagt gtctgagtga acaaattgcc gatgcctatt
     2701 cttccttcca aagtgttcct gcaatccgga ttgatgggac gggcaaagca actcaagaca
     2761 gtgatgttgt caaacgagag gtagatgagg agctgagcac aggattccga aatggccaga
     2821 atgcagctgt ggtccaccgc tttgagtcac tgcctgcagg ctctactttg atcttctata
     2881 agtattgtga tcatgaaaat gcagccttca aagatgtagc cttagtccta actgtcttgt
     2941 tagaggagga gacacttgca accagtctag gcctaaagga aattgaagaa aaagtgaggg
     3001 atttcctcaa agtcaagttc accaactctg atacacccaa ctcctacaaa catatggacc
     3061 cagacaaatt gagtgggctc tggagccgta tttctcactt agtcctgcca gtacaacctg
     3121 aaaatgacct gaaaaggggc atctgcttat aagaggagac agaagagaaa atcatgtctc
     3181 aagttctgag aatttttcaa actttctaac catagacagg atccagagct ctttttgaaa
     3241 gaactggttt ctttttaaag gaggttaagt tcttaggtaa acgtgggata tgtaaatcgt
     3301 ttattcaacc taattatctg ttttttgaga gaatcgtttc cttgtttcca ttgaggtctg
     3361 tgttaatgat atctgaggac tgtaaattat atgcagtccc atagaggatc gattctgggt
     3421 tgaatcatta ttgctatggt atgaccagtg ggagggatta ggctccttcc tatgaatcca
     3481 cccaattttt taacttagat ttttttcaca gtttgtcgag ttattagtaa gacagctccc
     3541 tgaacataac tgtgggtttt cccttttgtc ctcttctaca tcgtttagat gtgaattctg
     3601 tagtcagctt ctgcttatag gaacaaaaat aatgaaaggc catccaagtg tgtgtttggg
     3661 atttttgggt tttgtttttt tcctttgatt ttggagggca aggagaagga gacatgggaa
     3721 aagttgtgga atggggagag aaagggggga aaaagtcttc aaggtgaaat gttaaaataa
     3781 gccactgagg gaattccctg gcggtccagt ggttaggact ccacactttc aatgccgagg
     3841 gcccaggttt gatccctggt cagggaacta agatcctgca agctgtccca cgtggccaga
     3901 aagaaagcca ctgaggctta gggttagtca aacatagtta tatgaactgc attctcagtg
     3961 aattctgttg ggacttgttt ttcacatgtc cttttttttc ctttcagaaa tttttattcc
     4021 tcccagagat tctgaagcat gtatatgatg aggtttagta tgtttgttca cttggctctt
     4081 aagaatgggt aagttcagag ccatttattt tggtcatatc ctgaaagttt tgttaagaaa
     4141 tacaatttca ggaattggta aaccatttgt taaccagctc tcctgggctg ttgaagaagg
     4201 atttgatttt ctgcatgtct acttgttgca ttctgagtcc tttaatgaca cttttgtaac
     4261 aagagtaaag atttacaatg cacatgataa attctactaa gagtgcctca agcgaaaaag
     4321 aaagtgaagt ttaccatata tgaagaatgt taaaatgtac tattgtacat tactgtacta
     4381 ctatagaatt tcagttttaa cttagcatca ctaacagctt tctcatccgt caactgcttt
     4441 ggttttctta gaagcttaaa attctggatc cactttattt ttttattgtc tacaaacctt
     4501 taaatgaaaa tattgttttt agaatactgg agcccgtcaa tggcttcatc atttaccttt
     4561 taaggatccc atgactggtg gtagagtaca gtctcgtttc ttcccactag gactaccagt
     4621 attcataaat ttatacccct tattgtaatt tgttcctgac tgtcagaagt caaatattct
     4681 gatttataga ggattctaaa acaagagttt ttgaaaagac ttattttata cctatatata
     4741 ttatatggag aaacatgttt ttttaaatgt ttcattgacc aaaataattt taaagtaatt
     4801 aatattactt atatcaggaa aaataattgt agcagctgat ctgtaaatga ctttaaaagc
     4861 tattttagta atttaaataa atttactttc ttggtttgta
//
LOCUS       XM_032653598            4888 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 1
            (TOR1AIP1), transcript variant X5, mRNA.
ACCESSION   XM_032653598
VERSION     XM_032653598.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4888
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4888
                     /gene="TOR1AIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764724"
     CDS             1314..3140
                     /gene="TOR1AIP1"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 1 isoform X5"
                     /protein_id="XP_032509489.1"
                     /db_xref="GeneID:116764724"
                     /translation="MAGEGWRAEPEKEGWGLYVTPRAPLREARPRLAPQNGGGSDAPA
                     YGTPTPSRHGRREVRFSEEPPEVYGDFEPRAAKEKAPVGRQIPLEEFRPDSAKEEVRE
                     RSYYLRSRQRRQPRLQEAEMKTRRATRLQQQQHSQPPPLQPSPITTRRGLRDSHLSEE
                     DEPPSQTVLSPTVSKNTLRRTQTPVVSKDPVIGLCRPPLRSSRFDSSYKTNGNTKMSE
                     LESEFELFQGEMEENDQDSSDSDVTVVKVRSEDSVESGDQTTRSSSQYPESFWQSSQS
                     RDFTAYDKQPLALSSGYQKNPQEWVEQTTKIRTRMQTSSPGNRSIYGSFSDDDGVQKS
                     ELGNQSPSTSSQQVTGQPQSASFVKVNWWWPLVLIAALLIGCFLYTRTPEAETTAVQE
                     FQNQMKQLMNKYQGQDEKLWKRSLTFLEKHLNSSHPRPQPAILLLTAARDAEEALKCL
                     SEQIADAYSSFQSVPAIRIDGTGKATQDSDVVKREVDEELSTGFRNGQNAAVVHRFES
                     LPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEETLATSLGLKEIEEKVRDFLKVKFT
                     NSDTPNSYKHMDPDKLSGLWSRISHLVLPVQPENDLKRGICL"
     misc_feature    1752..2438
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2448..3137
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 gatttcacta aattgaaatc tgtgcccagt ttggacaaat gagttgctca aaaacattct
       61 aaagtgattt taaatacagg aaagaataaa caaatacctt caaaattttc aggctcgttc
      121 attataattg ctatccaaat tgcaactttt taaatctagt cactaaaatc aattatagaa
      181 agccgtccaa gaagtgtgtg tatatttgaa ggcaagatta atcttttttc aataattgtt
      241 cagactttat actaaattaa cattccctca gtgtctaaat ttggttagat atttgcagat
      301 tatccacatc tgcaaatacg atacacagag gtggaacata ggcttttatc atgctttctt
      361 attcagtaaa ctaaacgcag gaaaacccta tatcaaatgc agtatatcaa atcatgccca
      421 gaatcaaagt aaaaataatg gatcacaagt gaaaattaca gtgccgtcat taaagtactt
      481 gttcatttct cactgtccat aacacagcac tagcaagctt tctgaacagt gctgctggac
      541 tacagctttt atacgaaacc aggaataaga ctgcttgcta tgcgcacatt ttgcaaatgt
      601 taatccaccc cagtatgcct gtagatccga tttcgtacac tcaacgaggc acttaaaact
      661 taaaaagtgg ttaaatgcct tcccaaggac cttgaaacta aaattttctc caagatgaca
      721 cctacaaaag tatctttctt atcaacccct gctaagaaac actcggaaag gtacggcgga
      781 ggcagcagtc gatcagaggc tgcgggaaaa ctgcgcaaca gcctgggggt gaggaccgaa
      841 acttcccctc cactctgcct ttcccaggtt ctcggtactg ggggactggc cggacgtctc
      901 ctgcgtgccg gcaacagttg ccaggagcag cgggctgagt accggcactc tgcccaacca
      961 gtggtctctt ctccgtcgtc ccctccttcc ctccctgaag gctgaggaca gcgacgtcct
     1021 cctccctctt ctcctcctct ttggtgcctt cagccaggag gcgggagtga cccgcggcag
     1081 ctgacccagc acaggcactg cctctcccac agccctcaga acacacgatg ggcccagagg
     1141 cgggtttgca gcacagcagc gacgacgcag gcggcagccc cagcgactct caactgcctc
     1201 cctgaccgtc gacaccactg ccgaacaccc gaaaaaccat cgccaccaac ggcgagagac
     1261 tctacaggcc ctccaaaaca ccttctcgat caactcaagc tacgtcaaca actatggcag
     1321 gcgaggggtg gcgggcggag ccggagaagg aaggatgggg gctgtacgtc acgcccaggg
     1381 ctccgctacg ggaggcgagg ccccggctcg cccctcaaaa tggcggcggc agtgacgcgc
     1441 ctgcgtatgg tactcctacg ccgtcgcgcc acggccggcg ggaagtgagg ttctcagaag
     1501 agccgcccga agtgtacggc gacttcgagc cccgggcggc caaagaaaag gccccggtgg
     1561 gaagacaaat tccgctagaa gagttccggc ccgattcggc gaaagaggaa gtgagagaac
     1621 gctcctatta ccttcggtct cggcagcgga ggcagccgcg actccaggaa gccgagatga
     1681 agacgcgaag ggctactcgc cttcagcagc agcagcactc acagccgcct ccgctgcagc
     1741 cgtctccgat tacgacccgg agaggattac gggactccca tttatccgaa gaggatgaac
     1801 caccttcaca aactgtttta agcccaactg tctcaaagaa tactctcagg agaacacaga
     1861 ctccagtggt gagtaaagat cctgtaatcg gcctgtgtag accccctcta agaagctcaa
     1921 gatttgattc gtcatataaa acaaatggaa atactaaaat gagtgaatta gaaagtgaat
     1981 ttgagctttt tcaaggggaa atggaggaaa atgatcaaga cagctctgac agtgatgtta
     2041 cggttgttaa ggtcagatcc gaggattctg ttgagtccgg agaccaaacc accagatcat
     2101 caagtcaata tccagaatca ttttggcagt catcacaaag tcgagacttc acagcttatg
     2161 ataagcaacc attagcgcta agctcgggat atcaaaaaaa tcctcaggaa tgggttgaac
     2221 aaaccacaaa aataaggact aggatgcaaa catcatcacc aggcaatcgt tcgatatatg
     2281 gcagtttttc agatgatgac ggtgttcaga aatcagagct tggaaaccaa tctccatcaa
     2341 cctccagcca acaagtgact ggacaacccc aaagtgcatc ttttgtcaag gtgaactggt
     2401 ggtggcccct tgttctgata gctgcgcttc tcattgggtg ttttttgtac actcgtactc
     2461 ctgaagcaga aaccactgct gttcaagagt tccagaacca gatgaaacaa cttatgaata
     2521 agtaccaagg tcaagatgag aagctgtgga aaaggagcct aacattcctg gaaaaacatc
     2581 ttaatagctc ccaccctcgg cctcagcctg ctatcttgct gctcactgct gcccgagatg
     2641 ctgaagaagc actcaagtgt ctgagtgaac aaattgccga tgcctattct tccttccaaa
     2701 gtgttcctgc aatccggatt gatgggacgg gcaaagcaac tcaagacagt gatgttgtca
     2761 aacgagaggt agatgaggag ctgagcacag gattccgaaa tggccagaat gcagctgtgg
     2821 tccaccgctt tgagtcactg cctgcaggct ctactttgat cttctataag tattgtgatc
     2881 atgaaaatgc agccttcaaa gatgtagcct tagtcctaac tgtcttgtta gaggaggaga
     2941 cacttgcaac cagtctaggc ctaaaggaaa ttgaagaaaa agtgagggat ttcctcaaag
     3001 tcaagttcac caactctgat acacccaact cctacaaaca tatggaccca gacaaattga
     3061 gtgggctctg gagccgtatt tctcacttag tcctgccagt acaacctgaa aatgacctga
     3121 aaaggggcat ctgcttataa gaggagacag aagagaaaat catgtctcaa gttctgagaa
     3181 tttttcaaac tttctaacca tagacaggat ccagagctct ttttgaaaga actggtttct
     3241 ttttaaagga ggttaagttc ttaggtaaac gtgggatatg taaatcgttt attcaaccta
     3301 attatctgtt ttttgagaga atcgtttcct tgtttccatt gaggtctgtg ttaatgatat
     3361 ctgaggactg taaattatat gcagtcccat agaggatcga ttctgggttg aatcattatt
     3421 gctatggtat gaccagtggg agggattagg ctccttccta tgaatccacc caatttttta
     3481 acttagattt ttttcacagt ttgtcgagtt attagtaaga cagctccctg aacataactg
     3541 tgggttttcc cttttgtcct cttctacatc gtttagatgt gaattctgta gtcagcttct
     3601 gcttatagga acaaaaataa tgaaaggcca tccaagtgtg tgtttgggat ttttgggttt
     3661 tgtttttttc ctttgatttt ggagggcaag gagaaggaga catgggaaaa gttgtggaat
     3721 ggggagagaa aggggggaaa aagtcttcaa ggtgaaatgt taaaataagc cactgaggga
     3781 attccctggc ggtccagtgg ttaggactcc acactttcaa tgccgagggc ccaggtttga
     3841 tccctggtca gggaactaag atcctgcaag ctgtcccacg tggccagaaa gaaagccact
     3901 gaggcttagg gttagtcaaa catagttata tgaactgcat tctcagtgaa ttctgttggg
     3961 acttgttttt cacatgtcct tttttttcct ttcagaaatt tttattcctc ccagagattc
     4021 tgaagcatgt atatgatgag gtttagtatg tttgttcact tggctcttaa gaatgggtaa
     4081 gttcagagcc atttattttg gtcatatcct gaaagttttg ttaagaaata caatttcagg
     4141 aattggtaaa ccatttgtta accagctctc ctgggctgtt gaagaaggat ttgattttct
     4201 gcatgtctac ttgttgcatt ctgagtcctt taatgacact tttgtaacaa gagtaaagat
     4261 ttacaatgca catgataaat tctactaaga gtgcctcaag cgaaaaagaa agtgaagttt
     4321 accatatatg aagaatgtta aaatgtacta ttgtacatta ctgtactact atagaatttc
     4381 agttttaact tagcatcact aacagctttc tcatccgtca actgctttgg ttttcttaga
     4441 agcttaaaat tctggatcca ctttattttt ttattgtcta caaaccttta aatgaaaata
     4501 ttgtttttag aatactggag cccgtcaatg gcttcatcat ttacctttta aggatcccat
     4561 gactggtggt agagtacagt ctcgtttctt cccactagga ctaccagtat tcataaattt
     4621 atacccctta ttgtaatttg ttcctgactg tcagaagtca aatattctga tttatagagg
     4681 attctaaaac aagagttttt gaaaagactt attttatacc tatatatatt atatggagaa
     4741 acatgttttt ttaaatgttt cattgaccaa aataatttta aagtaattaa tattacttat
     4801 atcaggaaaa ataattgtag cagctgatct gtaaatgact ttaaaagcta ttttagtaat
     4861 ttaaataaat ttactttctt ggtttgta
//
LOCUS       XM_032653607            4890 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 1
            (TOR1AIP1), transcript variant X6, mRNA.
ACCESSION   XM_032653607
VERSION     XM_032653607.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4890
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4890
                     /gene="TOR1AIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764724"
     CDS             1322..3142
                     /gene="TOR1AIP1"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 1 isoform X6"
                     /protein_id="XP_032509498.1"
                     /db_xref="GeneID:116764724"
                     /translation="MAGEGWRAEPEKEGWGLYVTPRAPLREARPRLAPQNGGGSDAPA
                     YGTPTPSRHGRREVRFSEEPPEVYGDFEPRAAKEKAPVGRQIPLEEFRPDSAKEEVRE
                     RSYYLRSRQRRQPRLQEAEMKTRRATRLQQQQHSQPPPLQPSPITTRRGLRDSHLSEE
                     DEPPSQTVLSPTVSKNTLRRTQTPVVSKDPVIGLCRPPLRSSRFEATSVQQKVNFSEE
                     GEMEENDQDSSDSDVTVVKVRSEDSVESGDQTTRSSSQYPESFWQSSQSRDFTAYDKQ
                     PLALSSGYQKNPQEWVEQTTKIRTRMQTVKYYRTPSSPGNRSIYGSFSDDDGVQKSEL
                     GNQSPSTSSQQVTGQPQSASFVKVNWWWPLVLIAALLIGCFLYTRTPEAETTAVQEFQ
                     NQMKQLMNKYQGQDEKLWKRSLTFLEKHLNSSHPRPQPAILLLTAARDAEEALKCLSE
                     QIADAYSSFQSVPAIRIDGTGKATQDSDVVKREVDEELSTGFRNGQNAAVVHRFESLP
                     AGSTLIFYKYCDHENAAFKDVALVLTVLLEEETLATSLGLKEIEEKVRDFLKVKFTNS
                     DTPNSYKHMDPDKLSGLWSRISHLVLPVQPENDLKRGICL"
     misc_feature    1760..2440
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2450..3139
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 caccttaaga tttcactaaa ttgaaatctg tgcccagttt ggacaaatga gttgctcaaa
       61 aacattctaa agtgatttta aatacaggaa agaataaaca aataccttca aaattttcag
      121 gctcgttcat tataattgct atccaaattg caacttttta aatctagtca ctaaaatcaa
      181 ttatagaaag ccgtccaaga agtgtgtgta tatttgaagg caagattaat cttttttcaa
      241 taattgttca gactttatac taaattaaca ttccctcagt gtctaaattt ggttagatat
      301 ttgcagatta tccacatctg caaatacgat acacagaggt ggaacatagg cttttatcat
      361 gctttcttat tcagtaaact aaacgcagga aaaccctata tcaaatgcag tatatcaaat
      421 catgcccaga atcaaagtaa aaataatgga tcacaagtga aaattacagt gccgtcatta
      481 aagtacttgt tcatttctca ctgtccataa cacagcacta gcaagctttc tgaacagtgc
      541 tgctggacta cagcttttat acgaaaccag gaataagact gcttgctatg cgcacatttt
      601 gcaaatgtta atccacccca gtatgcctgt agatccgatt tcgtacactc aacgaggcac
      661 ttaaaactta aaaagtggtt aaatgccttc ccaaggacct tgaaactaaa attttctcca
      721 agatgacacc tacaaaagta tctttcttat caacccctgc taagaaacac tcggaaaggt
      781 acggcggagg cagcagtcga tcagaggctg cgggaaaact gcgcaacagc ctgggggtga
      841 ggaccgaaac ttcccctcca ctctgccttt cccaggttct cggtactggg ggactggccg
      901 gacgtctcct gcgtgccggc aacagttgcc aggagcagcg ggctgagtac cggcactctg
      961 cccaaccagt ggtctcttct ccgtcgtccc ctccttccct ccctgaaggc tgaggacagc
     1021 gacgtcctcc tccctcttct cctcctcttt ggtgccttca gccaggaggc gggagtgacc
     1081 cgcggcagct gacccagcac aggcactgcc tctcccacag ccctcagaac acacgatggg
     1141 cccagaggcg ggtttgcagc acagcagcga cgacgcaggc ggcagcccca gcgactctca
     1201 actgcctccc tgaccgtcga caccactgcc gaacacccga aaaaccatcg ccaccaacgg
     1261 cgagagactc tacaggccct ccaaaacacc ttctcgatca actcaagcta cgtcaacaac
     1321 tatggcaggc gaggggtggc gggcggagcc ggagaaggaa ggatgggggc tgtacgtcac
     1381 gcccagggct ccgctacggg aggcgaggcc ccggctcgcc cctcaaaatg gcggcggcag
     1441 tgacgcgcct gcgtatggta ctcctacgcc gtcgcgccac ggccggcggg aagtgaggtt
     1501 ctcagaagag ccgcccgaag tgtacggcga cttcgagccc cgggcggcca aagaaaaggc
     1561 cccggtggga agacaaattc cgctagaaga gttccggccc gattcggcga aagaggaagt
     1621 gagagaacgc tcctattacc ttcggtctcg gcagcggagg cagccgcgac tccaggaagc
     1681 cgagatgaag acgcgaaggg ctactcgcct tcagcagcag cagcactcac agccgcctcc
     1741 gctgcagccg tctccgatta cgacccggag aggattacgg gactcccatt tatccgaaga
     1801 ggatgaacca ccttcacaaa ctgttttaag cccaactgtc tcaaagaata ctctcaggag
     1861 aacacagact ccagtggtga gtaaagatcc tgtaatcggc ctgtgtagac cccctctaag
     1921 aagctcaaga tttgaagcca ccagtgtcca acagaaggtc aatttctcag aagaagggga
     1981 aatggaggaa aatgatcaag acagctctga cagtgatgtt acggttgtta aggtcagatc
     2041 cgaggattct gttgagtccg gagaccaaac caccagatca tcaagtcaat atccagaatc
     2101 attttggcag tcatcacaaa gtcgagactt cacagcttat gataagcaac cattagcgct
     2161 aagctcggga tatcaaaaaa atcctcagga atgggttgaa caaaccacaa aaataaggac
     2221 taggatgcaa acagtgaagt attaccgtac accatcatca ccaggcaatc gttcgatata
     2281 tggcagtttt tcagatgatg acggtgttca gaaatcagag cttggaaacc aatctccatc
     2341 aacctccagc caacaagtga ctggacaacc ccaaagtgca tcttttgtca aggtgaactg
     2401 gtggtggccc cttgttctga tagctgcgct tctcattggg tgttttttgt acactcgtac
     2461 tcctgaagca gaaaccactg ctgttcaaga gttccagaac cagatgaaac aacttatgaa
     2521 taagtaccaa ggtcaagatg agaagctgtg gaaaaggagc ctaacattcc tggaaaaaca
     2581 tcttaatagc tcccaccctc ggcctcagcc tgctatcttg ctgctcactg ctgcccgaga
     2641 tgctgaagaa gcactcaagt gtctgagtga acaaattgcc gatgcctatt cttccttcca
     2701 aagtgttcct gcaatccgga ttgatgggac gggcaaagca actcaagaca gtgatgttgt
     2761 caaacgagag gtagatgagg agctgagcac aggattccga aatggccaga atgcagctgt
     2821 ggtccaccgc tttgagtcac tgcctgcagg ctctactttg atcttctata agtattgtga
     2881 tcatgaaaat gcagccttca aagatgtagc cttagtccta actgtcttgt tagaggagga
     2941 gacacttgca accagtctag gcctaaagga aattgaagaa aaagtgaggg atttcctcaa
     3001 agtcaagttc accaactctg atacacccaa ctcctacaaa catatggacc cagacaaatt
     3061 gagtgggctc tggagccgta tttctcactt agtcctgcca gtacaacctg aaaatgacct
     3121 gaaaaggggc atctgcttat aagaggagac agaagagaaa atcatgtctc aagttctgag
     3181 aatttttcaa actttctaac catagacagg atccagagct ctttttgaaa gaactggttt
     3241 ctttttaaag gaggttaagt tcttaggtaa acgtgggata tgtaaatcgt ttattcaacc
     3301 taattatctg ttttttgaga gaatcgtttc cttgtttcca ttgaggtctg tgttaatgat
     3361 atctgaggac tgtaaattat atgcagtccc atagaggatc gattctgggt tgaatcatta
     3421 ttgctatggt atgaccagtg ggagggatta ggctccttcc tatgaatcca cccaattttt
     3481 taacttagat ttttttcaca gtttgtcgag ttattagtaa gacagctccc tgaacataac
     3541 tgtgggtttt cccttttgtc ctcttctaca tcgtttagat gtgaattctg tagtcagctt
     3601 ctgcttatag gaacaaaaat aatgaaaggc catccaagtg tgtgtttggg atttttgggt
     3661 tttgtttttt tcctttgatt ttggagggca aggagaagga gacatgggaa aagttgtgga
     3721 atggggagag aaagggggga aaaagtcttc aaggtgaaat gttaaaataa gccactgagg
     3781 gaattccctg gcggtccagt ggttaggact ccacactttc aatgccgagg gcccaggttt
     3841 gatccctggt cagggaacta agatcctgca agctgtccca cgtggccaga aagaaagcca
     3901 ctgaggctta gggttagtca aacatagtta tatgaactgc attctcagtg aattctgttg
     3961 ggacttgttt ttcacatgtc cttttttttc ctttcagaaa tttttattcc tcccagagat
     4021 tctgaagcat gtatatgatg aggtttagta tgtttgttca cttggctctt aagaatgggt
     4081 aagttcagag ccatttattt tggtcatatc ctgaaagttt tgttaagaaa tacaatttca
     4141 ggaattggta aaccatttgt taaccagctc tcctgggctg ttgaagaagg atttgatttt
     4201 ctgcatgtct acttgttgca ttctgagtcc tttaatgaca cttttgtaac aagagtaaag
     4261 atttacaatg cacatgataa attctactaa gagtgcctca agcgaaaaag aaagtgaagt
     4321 ttaccatata tgaagaatgt taaaatgtac tattgtacat tactgtacta ctatagaatt
     4381 tcagttttaa cttagcatca ctaacagctt tctcatccgt caactgcttt ggttttctta
     4441 gaagcttaaa attctggatc cactttattt ttttattgtc tacaaacctt taaatgaaaa
     4501 tattgttttt agaatactgg agcccgtcaa tggcttcatc atttaccttt taaggatccc
     4561 atgactggtg gtagagtaca gtctcgtttc ttcccactag gactaccagt attcataaat
     4621 ttatacccct tattgtaatt tgttcctgac tgtcagaagt caaatattct gatttataga
     4681 ggattctaaa acaagagttt ttgaaaagac ttattttata cctatatata ttatatggag
     4741 aaacatgttt ttttaaatgt ttcattgacc aaaataattt taaagtaatt aatattactt
     4801 atatcaggaa aaataattgt agcagctgat ctgtaaatga ctttaaaagc tattttagta
     4861 atttaaataa atttactttc ttggtttgta
//
LOCUS       XM_032653617            4855 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 1
            (TOR1AIP1), transcript variant X7, mRNA.
ACCESSION   XM_032653617
VERSION     XM_032653617.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4855
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4855
                     /gene="TOR1AIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764724"
     CDS             1308..3107
                     /gene="TOR1AIP1"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 1 isoform X7"
                     /protein_id="XP_032509508.1"
                     /db_xref="GeneID:116764724"
                     /translation="MAGEGWRAEPEKEGWGLYVTPRAPLREARPRLAPQNGGGSDAPA
                     YGTPTPSRHGRREVRFSEEPPEVYGDFEPRAAKEKAPVGRQIPLEEFRPDSAKEEVRE
                     RSYYLRSRQRRQPRLQEAEMKTRRATRLQQQQHSQPPPLQPSPITTRRGLRDSHLSEE
                     DEPPSQTVLSPTVSKNTLRRTQTPVVSKDPVIGLCRPPLRSSRFEATSVQQKVNFSEE
                     GEMEENDQDSSDSDVTVVKVRSEDSVESGDQTTRSSSQYPESFWQSSQSRDFTAYDKQ
                     PLALSSGYQKNPQEWVEQTTKIRTRMQTSSPGNRSIYGSFSDDDGVQKSELGNQSPST
                     SSQQVTGQPQSASFVKVNWWWPLVLIAALLIGCFLYTRTPEAETTAVQEFQNQMKQLM
                     NKYQGQDEKLWKRSLTFLEKHLNSSHPRPQPAILLLTAARDAEEALKCLSEQIADAYS
                     SFQSVPAIRIDGTGKATQDSDVVKREVDEELSTGFRNGQNAAVVHRFESLPAGSTLIF
                     YKYCDHENAAFKDVALVLTVLLEEETLATSLGLKEIEEKVRDFLKVKFTNSDTPNSYK
                     HMDPDKLSGLWSRISHLVLPVQPENDLKRGICL"
     misc_feature    1746..2405
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2415..3104
                     /gene="TOR1AIP1"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 actaaattga aatctgtgcc cagtttggac aaatgagttg ctcaaaaaca ttctaaagtg
       61 attttaaata caggaaagaa taaacaaata ccttcaaaat tttcaggctc gttcattata
      121 attgctatcc aaattgcaac tttttaaatc tagtcactaa aatcaattat agaaagccgt
      181 ccaagaagtg tgtgtatatt tgaaggcaag attaatcttt tttcaataat tgttcagact
      241 ttatactaaa ttaacattcc ctcagtgtct aaatttggtt agatatttgc agattatcca
      301 catctgcaaa tacgatacac agaggtggaa cataggcttt tatcatgctt tcttattcag
      361 taaactaaac gcaggaaaac cctatatcaa atgcagtata tcaaatcatg cccagaatca
      421 aagtaaaaat aatggatcac aagtgaaaat tacagtgccg tcattaaagt acttgttcat
      481 ttctcactgt ccataacaca gcactagcaa gctttctgaa cagtgctgct ggactacagc
      541 ttttatacga aaccaggaat aagactgctt gctatgcgca cattttgcaa atgttaatcc
      601 accccagtat gcctgtagat ccgatttcgt acactcaacg aggcacttaa aacttaaaaa
      661 gtggttaaat gccttcccaa ggaccttgaa actaaaattt tctccaagat gacacctaca
      721 aaagtatctt tcttatcaac ccctgctaag aaacactcgg aaaggtacgg cggaggcagc
      781 agtcgatcag aggctgcggg aaaactgcgc aacagcctgg gggtgaggac cgaaacttcc
      841 cctccactct gcctttccca ggttctcggt actgggggac tggccggacg tctcctgcgt
      901 gccggcaaca gttgccagga gcagcgggct gagtaccggc actctgccca accagtggtc
      961 tcttctccgt cgtcccctcc ttccctccct gaaggctgag gacagcgacg tcctcctccc
     1021 tcttctcctc ctctttggtg ccttcagcca ggaggcggga gtgacccgcg gcagctgacc
     1081 cagcacaggc actgcctctc ccacagccct cagaacacac gatgggccca gaggcgggtt
     1141 tgcagcacag cagcgacgac gcaggcggca gccccagcga ctctcaactg cctccctgac
     1201 cgtcgacacc actgccgaac acccgaaaaa ccatcgccac caacggcgag agactctaca
     1261 ggccctccaa aacaccttct cgatcaactc aagctacgtc aacaactatg gcaggcgagg
     1321 ggtggcgggc ggagccggag aaggaaggat gggggctgta cgtcacgccc agggctccgc
     1381 tacgggaggc gaggccccgg ctcgcccctc aaaatggcgg cggcagtgac gcgcctgcgt
     1441 atggtactcc tacgccgtcg cgccacggcc ggcgggaagt gaggttctca gaagagccgc
     1501 ccgaagtgta cggcgacttc gagccccggg cggccaaaga aaaggccccg gtgggaagac
     1561 aaattccgct agaagagttc cggcccgatt cggcgaaaga ggaagtgaga gaacgctcct
     1621 attaccttcg gtctcggcag cggaggcagc cgcgactcca ggaagccgag atgaagacgc
     1681 gaagggctac tcgccttcag cagcagcagc actcacagcc gcctccgctg cagccgtctc
     1741 cgattacgac ccggagagga ttacgggact cccatttatc cgaagaggat gaaccacctt
     1801 cacaaactgt tttaagccca actgtctcaa agaatactct caggagaaca cagactccag
     1861 tggtgagtaa agatcctgta atcggcctgt gtagaccccc tctaagaagc tcaagatttg
     1921 aagccaccag tgtccaacag aaggtcaatt tctcagaaga aggggaaatg gaggaaaatg
     1981 atcaagacag ctctgacagt gatgttacgg ttgttaaggt cagatccgag gattctgttg
     2041 agtccggaga ccaaaccacc agatcatcaa gtcaatatcc agaatcattt tggcagtcat
     2101 cacaaagtcg agacttcaca gcttatgata agcaaccatt agcgctaagc tcgggatatc
     2161 aaaaaaatcc tcaggaatgg gttgaacaaa ccacaaaaat aaggactagg atgcaaacat
     2221 catcaccagg caatcgttcg atatatggca gtttttcaga tgatgacggt gttcagaaat
     2281 cagagcttgg aaaccaatct ccatcaacct ccagccaaca agtgactgga caaccccaaa
     2341 gtgcatcttt tgtcaaggtg aactggtggt ggccccttgt tctgatagct gcgcttctca
     2401 ttgggtgttt tttgtacact cgtactcctg aagcagaaac cactgctgtt caagagttcc
     2461 agaaccagat gaaacaactt atgaataagt accaaggtca agatgagaag ctgtggaaaa
     2521 ggagcctaac attcctggaa aaacatctta atagctccca ccctcggcct cagcctgcta
     2581 tcttgctgct cactgctgcc cgagatgctg aagaagcact caagtgtctg agtgaacaaa
     2641 ttgccgatgc ctattcttcc ttccaaagtg ttcctgcaat ccggattgat gggacgggca
     2701 aagcaactca agacagtgat gttgtcaaac gagaggtaga tgaggagctg agcacaggat
     2761 tccgaaatgg ccagaatgca gctgtggtcc accgctttga gtcactgcct gcaggctcta
     2821 ctttgatctt ctataagtat tgtgatcatg aaaatgcagc cttcaaagat gtagccttag
     2881 tcctaactgt cttgttagag gaggagacac ttgcaaccag tctaggccta aaggaaattg
     2941 aagaaaaagt gagggatttc ctcaaagtca agttcaccaa ctctgataca cccaactcct
     3001 acaaacatat ggacccagac aaattgagtg ggctctggag ccgtatttct cacttagtcc
     3061 tgccagtaca acctgaaaat gacctgaaaa ggggcatctg cttataagag gagacagaag
     3121 agaaaatcat gtctcaagtt ctgagaattt ttcaaacttt ctaaccatag acaggatcca
     3181 gagctctttt tgaaagaact ggtttctttt taaaggaggt taagttctta ggtaaacgtg
     3241 ggatatgtaa atcgtttatt caacctaatt atctgttttt tgagagaatc gtttccttgt
     3301 ttccattgag gtctgtgtta atgatatctg aggactgtaa attatatgca gtcccataga
     3361 ggatcgattc tgggttgaat cattattgct atggtatgac cagtgggagg gattaggctc
     3421 cttcctatga atccacccaa ttttttaact tagatttttt tcacagtttg tcgagttatt
     3481 agtaagacag ctccctgaac ataactgtgg gttttccctt ttgtcctctt ctacatcgtt
     3541 tagatgtgaa ttctgtagtc agcttctgct tataggaaca aaaataatga aaggccatcc
     3601 aagtgtgtgt ttgggatttt tgggttttgt ttttttcctt tgattttgga gggcaaggag
     3661 aaggagacat gggaaaagtt gtggaatggg gagagaaagg ggggaaaaag tcttcaaggt
     3721 gaaatgttaa aataagccac tgagggaatt ccctggcggt ccagtggtta ggactccaca
     3781 ctttcaatgc cgagggccca ggtttgatcc ctggtcaggg aactaagatc ctgcaagctg
     3841 tcccacgtgg ccagaaagaa agccactgag gcttagggtt agtcaaacat agttatatga
     3901 actgcattct cagtgaattc tgttgggact tgtttttcac atgtcctttt ttttcctttc
     3961 agaaattttt attcctccca gagattctga agcatgtata tgatgaggtt tagtatgttt
     4021 gttcacttgg ctcttaagaa tgggtaagtt cagagccatt tattttggtc atatcctgaa
     4081 agttttgtta agaaatacaa tttcaggaat tggtaaacca tttgttaacc agctctcctg
     4141 ggctgttgaa gaaggatttg attttctgca tgtctacttg ttgcattctg agtcctttaa
     4201 tgacactttt gtaacaagag taaagattta caatgcacat gataaattct actaagagtg
     4261 cctcaagcga aaaagaaagt gaagtttacc atatatgaag aatgttaaaa tgtactattg
     4321 tacattactg tactactata gaatttcagt tttaacttag catcactaac agctttctca
     4381 tccgtcaact gctttggttt tcttagaagc ttaaaattct ggatccactt tattttttta
     4441 ttgtctacaa acctttaaat gaaaatattg tttttagaat actggagccc gtcaatggct
     4501 tcatcattta ccttttaagg atcccatgac tggtggtaga gtacagtctc gtttcttccc
     4561 actaggacta ccagtattca taaatttata ccccttattg taatttgttc ctgactgtca
     4621 gaagtcaaat attctgattt atagaggatt ctaaaacaag agtttttgaa aagacttatt
     4681 ttatacctat atatattata tggagaaaca tgttttttta aatgtttcat tgaccaaaat
     4741 aattttaaag taattaatat tacttatatc aggaaaaata attgtagcag ctgatctgta
     4801 aatgacttta aaagctattt tagtaattta aataaattta ctttcttggt ttgta
//
LOCUS       XM_032653630            6470 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 2
            (TOR1AIP2), transcript variant X1, mRNA.
ACCESSION   XM_032653630
VERSION     XM_032653630.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6470
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6470
                     /gene="TOR1AIP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 26 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764746"
     CDS             474..1883
                     /gene="TOR1AIP2"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 2"
                     /protein_id="XP_032509521.1"
                     /db_xref="GeneID:116764746"
                     /translation="MTDRGLRDPPEDPQKDLENDPSINCQAQETTVTASTTEEAQTPN
                     PASGLNKDHQEVESVGPGSTDTDGQSESPDETDDRKYPKDTEGENGQSFQGGEQGHPL
                     PSESLGEDLLDPEPNCSPSDKVGRTDARLVSSSAALPEHVSDRPGALQEPPVLDPQDT
                     QSPGHSSAGLESQDTLRKRLLAPEVERHQQETQKLEGNKENAQDTISKINKKRFQSYG
                     PICLGLLFLIVLLRSVNSYYSSPAQQVPKNPALEAFLVHFSHLKDKYPGQSSFLWQRG
                     RKFLQKHLNASHPTEPATIIFTAAREGRETLKCLSHHVANAYTSAQKVSAIQIDGAGK
                     TFQDSDKVKESVDNELSSGFEKGGKAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVA
                     LVLTILLEEETLEASVSPRETEEKVRDLLWARFTNSNTPSSFSHMDSDKLSGLWSRIS
                     HLVLPVQPVRSIEEQGCFL"
     misc_feature    474..1133
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    1179..1877
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 cccgcggagg tcgcggtcac gtgggcaggg acaggacgac gttctgttcc gccgcgtccg
       61 aggggagcag ctcagcgttg tggagcagaa agaacactct taagggctct cctgacattg
      121 acagtcgacg atttaaaacc ccgctagaat ttgtgtgtga agcattccca gacccttcaa
      181 ccaactcagc agcagctact tccctgtgac tgggtcctga ttaaggtcct cccaagaaag
      241 acttcattgg atccacgctc aagaggactc tgccaggttt tcctgaccct tctacatcgc
      301 tataaagtgc caaggcctta agacttggtc actgtatata tgccttgttt cctgggtcca
      361 cgggaagcat gagcctgttg ggacttggga caagaagaaa acaagacatc tgcacaagga
      421 aaaccagaca ctaacaaaaa gtatcccaaa gtctgaagag ataaaacgca aacatgaccg
      481 acagaggact tagggatcct ccagaggacc ctcaaaagga tttggaaaat gatccatcaa
      541 taaattgtca ggcacaggag actacagtga cagcaagtac cactgaagaa gctcagaccc
      601 caaaccctgc ctctggtctt aacaaagacc accaagaggt agaatcagtt ggtccaggaa
      661 gtacagatac agatggtcaa tcagaaagtc cagatgaaac agatgatagg aaatatccaa
      721 aggatacaga aggtgagaac ggccagagtt tccagggtgg agaacaaggg catccactcc
      781 cttcagaaag tctgggtgaa gacctcttgg atccagaacc caactgttct ccaagtgaca
      841 aggtgggaag aacagacgca cgcttagtga gcagctctgc agccctccct gagcacgtga
      901 gcgacagacc cggagctttg caggagccac ctgtccttga ccctcaggat acccagagtc
      961 ctgggcattc cagtgcaggg ctggagagcc aggacacact gaggaagcga ctgctggcac
     1021 cagaggttga gagacatcaa caagaaacac aaaaattgga aggaaacaag gagaatgcac
     1081 aggataccat aagcaagatt aataaaaagc gttttcagag ctatggcccc atctgtcttg
     1141 gcctcctgtt tctgattgtt ttgctacgtt ctgttaatag ctattattcc tctccggccc
     1201 agcaagtgcc caaaaatcca gctttggagg ccttcttggt tcatttcagc catttgaagg
     1261 ataaatatcc aggccagagt tcctttctgt ggcagagagg acgtaagttt ctccagaagc
     1321 acctcaatgc ttcacacccc actgagccag ccaccatcat atttacagca gctcgagagg
     1381 gaagagagac cctgaagtgc ctcagccacc acgttgcgaa tgcctacacg tctgcccaga
     1441 aagtctctgc cattcagatt gatggagctg gaaaaacctt tcaggacagt gataaggtca
     1501 aggagtcagt tgacaacgag ctgagctctg gatttgagaa gggcgggaag gctgctgtgg
     1561 tccaccgctt tgaatccctt cctgcaggct ccaccttgat cttctacaag tattgtgacc
     1621 atgagaacgc tgcctttaaa gatgtggccc tggtcctgac catcctactg gaggaggaaa
     1681 cattagaagc aagtgtcagc ccaagggaaa ctgaagagaa agtgcgagat ttactttggg
     1741 cgaggtttac caactctaac actcccagct ccttcagcca catggattca gacaaactga
     1801 gtggactgtg gagccgtatt tcccacctgg tgctgcctgt ccagccagtg aggagcatag
     1861 aagaacaggg ctgctttcta taagctaagc acagagttgg ttatgttcag catgggttta
     1921 ttaaaaagtc agtttaaaag ccttccattt atatggaagg aggttgacga atgtgaggaa
     1981 atagcctgga aagcacaaat gagcttattt gagaaaagaa attttcattt tttacttttt
     2041 gtaaaatctt tctaatctaa gcttgacaaa gctaaaagtt gacctgactt tttttccttg
     2101 cctgcctttc aagcaaatca gatatatata actgaggaat gttcttcaat ccaaaagtag
     2161 agcaacagaa tcattacatg ggaagataat cttctcagta actacagagt gatttttgtt
     2221 ttcttgaggc tctaaggagc cttttggata gtatttggac tcagattaaa gcaattacaa
     2281 ttataaaact gaaaattttt ttaaaaattt ctatcacatg ttaaatattt ttaaaattca
     2341 ttttaataac ctagttgtgg gattacatct tatgcttttt tgcacttttg aatagtatga
     2401 aaaaggaaat aagaattcaa atacttattt acctgaatac tatatgtaag gcactgtgtt
     2461 tttgttccgt taatgagctc tgagggaaaa gcagctgtgc tcaagaaatg ttcttaaaaa
     2521 ttgaaaacaa tgggggaatt gtttataatc actgcaaatg aagaaattcc aattggctgt
     2581 gtcttcgctt caattttctt gaatgattta gagcagtgat tttcaggctg tctactggca
     2641 cccctcccct ttgtatcaaa gaagttcttc tttttcccat tttatatatt gggctcctcc
     2701 ataagattta attggattta attggaataa agagttccac taataatgaa gtttgaaaat
     2761 cactgattaa gtgaaaaagc atcttggaag ataggaaaaa aaatgaaaat attaaaactc
     2821 atgagtaggt tgaaaataaa atacaggttt atcaagagac atgctattta tgaagaatga
     2881 agacttacag atgaatagca gaatgtataa actagtattt actagcatat ttctatgctt
     2941 ttggttaatc tctgttatca tttctgtctc ccctgaatgg aattttataa ttgtctacaa
     3001 tgagagtttg agtgctttaa gaagaacaga ttttaataac cagttgaatc atagattttt
     3061 atataggtac attagcataa ctttaccata ctgtttactt attatacagt gatggaacat
     3121 ttatctaatg cagttcattt cttgaccagc tagttagaag tatgattagg ttaacaatta
     3181 gaaaaatgca agagatgcta tacttagtga gaggaagtgg aaatggtaga tagattctaa
     3241 gaggttttaa cagctagtat taattgttag accatgttct gtgattgtaa gaaagcttga
     3301 gaaagatgct tatggagaca gtgattgttg atttgcatct caaccccgaa ggcagaactt
     3361 tagtaaaatg atcctgacct aatgaaggat ttgtcccatt acatggcata cctaggaact
     3421 accaccatga acctggaata tttcagttag gttttggcct ctgaagtcat gtgactaaat
     3481 tatggaagga tttttggaaa cagtaagaag atataggggt ctttgttgat gcctaaacag
     3541 agagcataaa gacatggggg gaagaatcta tttgaaagtg tttgtcacag gaaaaacaga
     3601 tctgttctaa ccaagacctg acattgtgct caattgagcg taaggccata cctaaaggaa
     3661 ctgttttcat ttgggacttt gtgaaagact cttccgctag atttgaggag agaccttcct
     3721 gaacaaaaag ttaaagcata gtgaatataa tatcaatcca atttaaaatc agtggaaact
     3781 gaagaaaaat ctatatgcca tattcaatat tttttgatat ttctggatct cagatgctag
     3841 cattacatca cacaaaacca ttggtgcctt gtagaactgg tgcctgctga cctgtgctac
     3901 ctcagattta taaagaacca atatgaagtg tgcatatcta atctgtcagt gactcagatc
     3961 acagctgaga caaagatggt ttcgtcattc agttgaatat ggtttttcat catttcagta
     4021 taatttagaa aatatttcca aatgtcacaa tttttttttt tactgttcag cctttgttaa
     4081 aaaaacgtgt ctccttccat gtataagtgc aatcaactga aactgttgtc agttttctgt
     4141 ccactatttc aaaaatcatt tttaaaagaa gcagtatatt agctctgtgt cctcatgaat
     4201 aaaatgatga ttcttagagc ataaaacttt gtatttttta aatgtacaaa taaaatctat
     4261 tatctaatgt acccttaggt taatttctat tcaattgtac ctgttttttt acacttttca
     4321 agtttctaaa ttttcttttg ggtgtctagt agttcatctt tcattactat aatagatagt
     4381 ttgcttgttt gacttagaac aatgacttgt gggcatttta tatgataccc aaacatcacc
     4441 atttaattat tatcatagaa caactctaat tgttatatat taatataaat cacttcttga
     4501 gtgataccag agttctagaa ccaactggta gaattataaa ctgtctcttg agttttttcc
     4561 cctgtggggt aaattttagg tttcccagtt agctcccaag caatgctgtt gtttctactt
     4621 ctaattttta aatcaataaa gtaatttaaa tatatttcat ttgaaagctg ccaagcttat
     4681 gtggtaaggt tcagcaggcc tgtgacccac catcctccag gtaatgacac ggttgaacag
     4741 tgttcgcagc tgaggtggtt ttgacccttt cacggttttt gtttgtttta tacaggaaac
     4801 gtaaggagca ctgatgataa aatgtaacaa attcagcatg taaaagtgat actaattcag
     4861 caagatgatc ttctccagga ctatatttgc atacatctga ccagtttcta tgcagaatag
     4921 tcaggtgtct agtacttcaa aacctaatgt taagcagaag acatactcat tatagctgat
     4981 taccactgac tgagaataaa gcttatatcc atacacagtt tatttgtaga ggagtacttt
     5041 caaataggaa catgatacct tttttctttt atcatctgaa aataaaatat agcaattata
     5101 aaaataaacc aagacatctt tgtaaagccc tcaatatgtc attttataaa agcagttttt
     5161 agtctgcttt tcatgttgaa tgtatggtta aatattaatc tttattttaa tattttgtcc
     5221 accaatctga gcataatgta tttcattttg aaatttgttg aaaagttagt ggttctgttt
     5281 tctcttgttt ttgatttttt caaaaattaa agtaccttta acactgtcac ttgttcaatg
     5341 ggaatgttga cgtttgtctt tatatatgta ttgtgaatat taatgattat gaatcactat
     5401 cataatccat agaaatacga tgaagtgatt attttaaaat atttctaagg gtatctatga
     5461 gattatgaaa tactgaggct tatgagtcac gtgggaaata cttgctatga ataatatatt
     5521 tgcaaagaag gtgttaccaa ttctagagag aactaaagat atctgtgtaa aacagttttt
     5581 ccagatgact ttaaaatatg ccttattcct attatgttaa gttttaggta ttaggttgta
     5641 aagtagctga tgatgtgggc ctaaatttgc ctcattcaga ctgagactgg gctactgaaa
     5701 ctcacttcca actaatacac ggccctatca gttctgtata tggcagtgct tctcgatctg
     5761 tttttaaaaa tatacaaact agttaagagc actagcctta tccaaagggc ctgagaacac
     5821 aaccagtatc ccctaatctg taaataattg gtaaagatat aaataattca gtttgcaatg
     5881 cctttccttc caggattata tgctgtgttt acttcagctt gttttgatgt ctttaaaaat
     5941 ccatagcttg gttcctatac tgggaaatga tctcccactt ttcctcattg aggcttcata
     6001 aactaacttt gctcttggct aagagcagtt acctgaaccc aaaagaatgt ttttggactt
     6061 gggaagcagt gggctcagta ggtagggtag agctggcaag aagatgtgaa ggcccgcggc
     6121 agttccagcc ttccttctcc ctgtgcccac actagcctca gccttctcag cccaaagctc
     6181 caggcagctg cttctggttg agcggattac aggagattta aatgtttgcc atccctgtcc
     6241 taaaagaaac ggcacattaa ctttcaaaca actgcaattt gctttttttt ttttttttac
     6301 ctaacaaaaa gaaacgggct ttgccagtat taatgtcaaa attcttggca tcccccttct
     6361 tccttatgta accatgattg tgtttgcatt tgtttcttat agatgttgaa gaatgtgcct
     6421 tattcaagtt agttgtgcgg ttttacgaaa aataaatctc cttaattttt
//
LOCUS       XM_032653635            6286 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 2
            (TOR1AIP2), transcript variant X2, mRNA.
ACCESSION   XM_032653635
VERSION     XM_032653635.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6286
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6286
                     /gene="TOR1AIP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 25 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764746"
     CDS             290..1699
                     /gene="TOR1AIP2"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 2"
                     /protein_id="XP_032509526.1"
                     /db_xref="GeneID:116764746"
                     /translation="MTDRGLRDPPEDPQKDLENDPSINCQAQETTVTASTTEEAQTPN
                     PASGLNKDHQEVESVGPGSTDTDGQSESPDETDDRKYPKDTEGENGQSFQGGEQGHPL
                     PSESLGEDLLDPEPNCSPSDKVGRTDARLVSSSAALPEHVSDRPGALQEPPVLDPQDT
                     QSPGHSSAGLESQDTLRKRLLAPEVERHQQETQKLEGNKENAQDTISKINKKRFQSYG
                     PICLGLLFLIVLLRSVNSYYSSPAQQVPKNPALEAFLVHFSHLKDKYPGQSSFLWQRG
                     RKFLQKHLNASHPTEPATIIFTAAREGRETLKCLSHHVANAYTSAQKVSAIQIDGAGK
                     TFQDSDKVKESVDNELSSGFEKGGKAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVA
                     LVLTILLEEETLEASVSPRETEEKVRDLLWARFTNSNTPSSFSHMDSDKLSGLWSRIS
                     HLVLPVQPVRSIEEQGCFL"
     misc_feature    290..949
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    995..1693
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 ggtcgcggtc acgtgggcag ggacaggacg acgttctgtt ccgccgcgtc cgaggggagc
       61 agctcagcgt tgtggagcag aaagaacact cttaagggct ctcctgacat tgacagtcga
      121 cgatttaaaa ccccgctaga attttcactg tatatatgcc ttgtttcctg ggtccacggg
      181 aagcatgagc ctgttgggac ttgggacaag aagaaaacaa gacatctgca caaggaaaac
      241 cagacactaa caaaaagtat cccaaagtct gaagagataa aacgcaaaca tgaccgacag
      301 aggacttagg gatcctccag aggaccctca aaaggatttg gaaaatgatc catcaataaa
      361 ttgtcaggca caggagacta cagtgacagc aagtaccact gaagaagctc agaccccaaa
      421 ccctgcctct ggtcttaaca aagaccacca agaggtagaa tcagttggtc caggaagtac
      481 agatacagat ggtcaatcag aaagtccaga tgaaacagat gataggaaat atccaaagga
      541 tacagaaggt gagaacggcc agagtttcca gggtggagaa caagggcatc cactcccttc
      601 agaaagtctg ggtgaagacc tcttggatcc agaacccaac tgttctccaa gtgacaaggt
      661 gggaagaaca gacgcacgct tagtgagcag ctctgcagcc ctccctgagc acgtgagcga
      721 cagacccgga gctttgcagg agccacctgt ccttgaccct caggataccc agagtcctgg
      781 gcattccagt gcagggctgg agagccagga cacactgagg aagcgactgc tggcaccaga
      841 ggttgagaga catcaacaag aaacacaaaa attggaagga aacaaggaga atgcacagga
      901 taccataagc aagattaata aaaagcgttt tcagagctat ggccccatct gtcttggcct
      961 cctgtttctg attgttttgc tacgttctgt taatagctat tattcctctc cggcccagca
     1021 agtgcccaaa aatccagctt tggaggcctt cttggttcat ttcagccatt tgaaggataa
     1081 atatccaggc cagagttcct ttctgtggca gagaggacgt aagtttctcc agaagcacct
     1141 caatgcttca caccccactg agccagccac catcatattt acagcagctc gagagggaag
     1201 agagaccctg aagtgcctca gccaccacgt tgcgaatgcc tacacgtctg cccagaaagt
     1261 ctctgccatt cagattgatg gagctggaaa aacctttcag gacagtgata aggtcaagga
     1321 gtcagttgac aacgagctga gctctggatt tgagaagggc gggaaggctg ctgtggtcca
     1381 ccgctttgaa tcccttcctg caggctccac cttgatcttc tacaagtatt gtgaccatga
     1441 gaacgctgcc tttaaagatg tggccctggt cctgaccatc ctactggagg aggaaacatt
     1501 agaagcaagt gtcagcccaa gggaaactga agagaaagtg cgagatttac tttgggcgag
     1561 gtttaccaac tctaacactc ccagctcctt cagccacatg gattcagaca aactgagtgg
     1621 actgtggagc cgtatttccc acctggtgct gcctgtccag ccagtgagga gcatagaaga
     1681 acagggctgc tttctataag ctaagcacag agttggttat gttcagcatg ggtttattaa
     1741 aaagtcagtt taaaagcctt ccatttatat ggaaggaggt tgacgaatgt gaggaaatag
     1801 cctggaaagc acaaatgagc ttatttgaga aaagaaattt tcatttttta ctttttgtaa
     1861 aatctttcta atctaagctt gacaaagcta aaagttgacc tgactttttt tccttgcctg
     1921 cctttcaagc aaatcagata tatataactg aggaatgttc ttcaatccaa aagtagagca
     1981 acagaatcat tacatgggaa gataatcttc tcagtaacta cagagtgatt tttgttttct
     2041 tgaggctcta aggagccttt tggatagtat ttggactcag attaaagcaa ttacaattat
     2101 aaaactgaaa atttttttaa aaatttctat cacatgttaa atatttttaa aattcatttt
     2161 aataacctag ttgtgggatt acatcttatg cttttttgca cttttgaata gtatgaaaaa
     2221 ggaaataaga attcaaatac ttatttacct gaatactata tgtaaggcac tgtgtttttg
     2281 ttccgttaat gagctctgag ggaaaagcag ctgtgctcaa gaaatgttct taaaaattga
     2341 aaacaatggg ggaattgttt ataatcactg caaatgaaga aattccaatt ggctgtgtct
     2401 tcgcttcaat tttcttgaat gatttagagc agtgattttc aggctgtcta ctggcacccc
     2461 tcccctttgt atcaaagaag ttcttctttt tcccatttta tatattgggc tcctccataa
     2521 gatttaattg gatttaattg gaataaagag ttccactaat aatgaagttt gaaaatcact
     2581 gattaagtga aaaagcatct tggaagatag gaaaaaaaat gaaaatatta aaactcatga
     2641 gtaggttgaa aataaaatac aggtttatca agagacatgc tatttatgaa gaatgaagac
     2701 ttacagatga atagcagaat gtataaacta gtatttacta gcatatttct atgcttttgg
     2761 ttaatctctg ttatcatttc tgtctcccct gaatggaatt ttataattgt ctacaatgag
     2821 agtttgagtg ctttaagaag aacagatttt aataaccagt tgaatcatag atttttatat
     2881 aggtacatta gcataacttt accatactgt ttacttatta tacagtgatg gaacatttat
     2941 ctaatgcagt tcatttcttg accagctagt tagaagtatg attaggttaa caattagaaa
     3001 aatgcaagag atgctatact tagtgagagg aagtggaaat ggtagataga ttctaagagg
     3061 ttttaacagc tagtattaat tgttagacca tgttctgtga ttgtaagaaa gcttgagaaa
     3121 gatgcttatg gagacagtga ttgttgattt gcatctcaac cccgaaggca gaactttagt
     3181 aaaatgatcc tgacctaatg aaggatttgt cccattacat ggcataccta ggaactacca
     3241 ccatgaacct ggaatatttc agttaggttt tggcctctga agtcatgtga ctaaattatg
     3301 gaaggatttt tggaaacagt aagaagatat aggggtcttt gttgatgcct aaacagagag
     3361 cataaagaca tggggggaag aatctatttg aaagtgtttg tcacaggaaa aacagatctg
     3421 ttctaaccaa gacctgacat tgtgctcaat tgagcgtaag gccataccta aaggaactgt
     3481 tttcatttgg gactttgtga aagactcttc cgctagattt gaggagagac cttcctgaac
     3541 aaaaagttaa agcatagtga atataatatc aatccaattt aaaatcagtg gaaactgaag
     3601 aaaaatctat atgccatatt caatattttt tgatatttct ggatctcaga tgctagcatt
     3661 acatcacaca aaaccattgg tgccttgtag aactggtgcc tgctgacctg tgctacctca
     3721 gatttataaa gaaccaatat gaagtgtgca tatctaatct gtcagtgact cagatcacag
     3781 ctgagacaaa gatggtttcg tcattcagtt gaatatggtt tttcatcatt tcagtataat
     3841 ttagaaaata tttccaaatg tcacaatttt tttttttact gttcagcctt tgttaaaaaa
     3901 acgtgtctcc ttccatgtat aagtgcaatc aactgaaact gttgtcagtt ttctgtccac
     3961 tatttcaaaa atcattttta aaagaagcag tatattagct ctgtgtcctc atgaataaaa
     4021 tgatgattct tagagcataa aactttgtat tttttaaatg tacaaataaa atctattatc
     4081 taatgtaccc ttaggttaat ttctattcaa ttgtacctgt ttttttacac ttttcaagtt
     4141 tctaaatttt cttttgggtg tctagtagtt catctttcat tactataata gatagtttgc
     4201 ttgtttgact tagaacaatg acttgtgggc attttatatg atacccaaac atcaccattt
     4261 aattattatc atagaacaac tctaattgtt atatattaat ataaatcact tcttgagtga
     4321 taccagagtt ctagaaccaa ctggtagaat tataaactgt ctcttgagtt ttttcccctg
     4381 tggggtaaat tttaggtttc ccagttagct cccaagcaat gctgttgttt ctacttctaa
     4441 tttttaaatc aataaagtaa tttaaatata tttcatttga aagctgccaa gcttatgtgg
     4501 taaggttcag caggcctgtg acccaccatc ctccaggtaa tgacacggtt gaacagtgtt
     4561 cgcagctgag gtggttttga ccctttcacg gtttttgttt gttttataca ggaaacgtaa
     4621 ggagcactga tgataaaatg taacaaattc agcatgtaaa agtgatacta attcagcaag
     4681 atgatcttct ccaggactat atttgcatac atctgaccag tttctatgca gaatagtcag
     4741 gtgtctagta cttcaaaacc taatgttaag cagaagacat actcattata gctgattacc
     4801 actgactgag aataaagctt atatccatac acagtttatt tgtagaggag tactttcaaa
     4861 taggaacatg ataccttttt tcttttatca tctgaaaata aaatatagca attataaaaa
     4921 taaaccaaga catctttgta aagccctcaa tatgtcattt tataaaagca gtttttagtc
     4981 tgcttttcat gttgaatgta tggttaaata ttaatcttta ttttaatatt ttgtccacca
     5041 atctgagcat aatgtatttc attttgaaat ttgttgaaaa gttagtggtt ctgttttctc
     5101 ttgtttttga ttttttcaaa aattaaagta cctttaacac tgtcacttgt tcaatgggaa
     5161 tgttgacgtt tgtctttata tatgtattgt gaatattaat gattatgaat cactatcata
     5221 atccatagaa atacgatgaa gtgattattt taaaatattt ctaagggtat ctatgagatt
     5281 atgaaatact gaggcttatg agtcacgtgg gaaatacttg ctatgaataa tatatttgca
     5341 aagaaggtgt taccaattct agagagaact aaagatatct gtgtaaaaca gtttttccag
     5401 atgactttaa aatatgcctt attcctatta tgttaagttt taggtattag gttgtaaagt
     5461 agctgatgat gtgggcctaa atttgcctca ttcagactga gactgggcta ctgaaactca
     5521 cttccaacta atacacggcc ctatcagttc tgtatatggc agtgcttctc gatctgtttt
     5581 taaaaatata caaactagtt aagagcacta gccttatcca aagggcctga gaacacaacc
     5641 agtatcccct aatctgtaaa taattggtaa agatataaat aattcagttt gcaatgcctt
     5701 tccttccagg attatatgct gtgtttactt cagcttgttt tgatgtcttt aaaaatccat
     5761 agcttggttc ctatactggg aaatgatctc ccacttttcc tcattgaggc ttcataaact
     5821 aactttgctc ttggctaaga gcagttacct gaacccaaaa gaatgttttt ggacttggga
     5881 agcagtgggc tcagtaggta gggtagagct ggcaagaaga tgtgaaggcc cgcggcagtt
     5941 ccagccttcc ttctccctgt gcccacacta gcctcagcct tctcagccca aagctccagg
     6001 cagctgcttc tggttgagcg gattacagga gatttaaatg tttgccatcc ctgtcctaaa
     6061 agaaacggca cattaacttt caaacaactg caatttgctt tttttttttt ttttacctaa
     6121 caaaaagaaa cgggctttgc cagtattaat gtcaaaattc ttggcatccc ccttcttcct
     6181 tatgtaacca tgattgtgtt tgcatttgtt tcttatagat gttgaagaat gtgccttatt
     6241 caagttagtt gtgcggtttt acgaaaaata aatctcctta attttt
//
LOCUS       XM_032653640            8078 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 2
            (TOR1AIP2), transcript variant X3, mRNA.
ACCESSION   XM_032653640
VERSION     XM_032653640.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8078
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8078
                     /gene="TOR1AIP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 23 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764746"
     CDS             2082..3491
                     /gene="TOR1AIP2"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 2"
                     /protein_id="XP_032509531.1"
                     /db_xref="GeneID:116764746"
                     /translation="MTDRGLRDPPEDPQKDLENDPSINCQAQETTVTASTTEEAQTPN
                     PASGLNKDHQEVESVGPGSTDTDGQSESPDETDDRKYPKDTEGENGQSFQGGEQGHPL
                     PSESLGEDLLDPEPNCSPSDKVGRTDARLVSSSAALPEHVSDRPGALQEPPVLDPQDT
                     QSPGHSSAGLESQDTLRKRLLAPEVERHQQETQKLEGNKENAQDTISKINKKRFQSYG
                     PICLGLLFLIVLLRSVNSYYSSPAQQVPKNPALEAFLVHFSHLKDKYPGQSSFLWQRG
                     RKFLQKHLNASHPTEPATIIFTAAREGRETLKCLSHHVANAYTSAQKVSAIQIDGAGK
                     TFQDSDKVKESVDNELSSGFEKGGKAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVA
                     LVLTILLEEETLEASVSPRETEEKVRDLLWARFTNSNTPSSFSHMDSDKLSGLWSRIS
                     HLVLPVQPVRSIEEQGCFL"
     misc_feature    2082..2741
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2787..3485
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 catcccttca gaaatgtgtt attaggttta tcaaaactta ggaatttaac tagccagaac
       61 tactctttaa gacaatataa aaataaacta ttcaccaatg atgctttaca acaaaattac
      121 attactttag aaaatttaaa agatgggcta aagcagaaga atgaaaaacg tgtagatcct
      181 tatagattta ctaaaataga agtatatcct ttatgtgtta aaaaaaatta acttatacaa
      241 ctgcaccagc ctgtgtggga gagtcaatac aatttaacat atatattttt tgccttctaa
      301 agcattcttc cagatattgg agatacagaa tgaacataag cacggaagta taacgtggtc
      361 cttcaaatac ataaatatat atgtagggtc tttgtcttca gaagttgaca atcttaagag
      421 agataaaact aacatatata tgggttaaac tgtcttgaat tgctactccc aatactaatt
      481 tacattatct ttaacatagt ttccaaaatc aacacatctt ccaatgtggc agcacgtgtt
      541 aggtcgtaaa tgtgcagcct attactctgc tctaaactga aaatccacct cctcttcatc
      601 atatccatca aaggtctatc actaactatg taattccatt atgattcaaa tcccctgatt
      661 ttacctcata ggtgccctac ggggagccaa catgaaactt catctctgac tcagtgttag
      721 atggggagag ggggcagggt gggagacgat ggactaaggg agttgattca tctgtgactt
      781 tcctaaaact atacaatcac cttgtcagta tccttgcggc ccattcagac gacaactaat
      841 taaaagtctt gctttgtctg gctactagtt aaccattgac ggtccccaac atgcaaattt
      901 ttgccagaga ccaccacact ctagaaagag cgatcagctc aagtttatca ggcactggga
      961 agcttcaagt tcaggataac tgccttaccc tatttcggtg taagtatttg ggtgggccct
     1021 caaatcaatt aatcaactac acttgttctc aaaacggcca ctcacaaaat tcccctccct
     1081 ctctccccac ctaggtagtg atggagaaag actggaaggt tagatgagaa ccaaaattct
     1141 cagctaggga cttctggcct ctgagagtta aaggaggaaa tggaactggc tttggtagaa
     1201 acatccgcag gacaaagaga accgatatga aacccagccc ggagtgattc agtgtcccgc
     1261 ctgccgccta actcgccgtc ccaacgtgca agcctgcaga aaagaggcaa tcctgacacc
     1321 cctaaattga tgcccaagga tgcacgcggc tccacggctc tgctcaagta gctccgcacg
     1381 actgccttcc cttccagtgc ccccgcccct gccgctttcc cgccagcggt cggggcggac
     1441 cgggcgtcgg gtcgcacgcc catccgggcg gagaagcccc gagggggtga ggtccagaaa
     1501 ggcacacgcc cggccgaggc gcacacgccc tctgcgcgcg cacgctcgcg gcactccctc
     1561 cctggctcgg ggctgagact gttacctctg tcggcctcac cttcggataa atgggagtcc
     1621 cgtaatcctc tccgggtcgt aatcggagac ggctgcagcg gaggcggctg tgagtgctgc
     1681 tgctgctgaa ggcgagtagc ccttcgcgtc ttcatctcgg cttcctggag tcgcggctgc
     1741 ctccgctgcc gagaccgaag gtgtgtgaag cattcccaga cccttcaacc aactcagcag
     1801 cagctacttc cctgtgactg ggtcctgatt aaggtcctcc caagaaagac ttcattggat
     1861 ccacgctcaa gaggactctg ccaggttttc ctgacccttc tacatcgcta taaagtgcca
     1921 aggccttaag acttggtcac tgtatatatg ccttgtttcc tgggtccacg ggaagcatga
     1981 gcctgttggg acttgggaca agaagaaaac aagacatctg cacaaggaaa accagacact
     2041 aacaaaaagt atcccaaagt ctgaagagat aaaacgcaaa catgaccgac agaggactta
     2101 gggatcctcc agaggaccct caaaaggatt tggaaaatga tccatcaata aattgtcagg
     2161 cacaggagac tacagtgaca gcaagtacca ctgaagaagc tcagacccca aaccctgcct
     2221 ctggtcttaa caaagaccac caagaggtag aatcagttgg tccaggaagt acagatacag
     2281 atggtcaatc agaaagtcca gatgaaacag atgataggaa atatccaaag gatacagaag
     2341 gtgagaacgg ccagagtttc cagggtggag aacaagggca tccactccct tcagaaagtc
     2401 tgggtgaaga cctcttggat ccagaaccca actgttctcc aagtgacaag gtgggaagaa
     2461 cagacgcacg cttagtgagc agctctgcag ccctccctga gcacgtgagc gacagacccg
     2521 gagctttgca ggagccacct gtccttgacc ctcaggatac ccagagtcct gggcattcca
     2581 gtgcagggct ggagagccag gacacactga ggaagcgact gctggcacca gaggttgaga
     2641 gacatcaaca agaaacacaa aaattggaag gaaacaagga gaatgcacag gataccataa
     2701 gcaagattaa taaaaagcgt tttcagagct atggccccat ctgtcttggc ctcctgtttc
     2761 tgattgtttt gctacgttct gttaatagct attattcctc tccggcccag caagtgccca
     2821 aaaatccagc tttggaggcc ttcttggttc atttcagcca tttgaaggat aaatatccag
     2881 gccagagttc ctttctgtgg cagagaggac gtaagtttct ccagaagcac ctcaatgctt
     2941 cacaccccac tgagccagcc accatcatat ttacagcagc tcgagaggga agagagaccc
     3001 tgaagtgcct cagccaccac gttgcgaatg cctacacgtc tgcccagaaa gtctctgcca
     3061 ttcagattga tggagctgga aaaacctttc aggacagtga taaggtcaag gagtcagttg
     3121 acaacgagct gagctctgga tttgagaagg gcgggaaggc tgctgtggtc caccgctttg
     3181 aatcccttcc tgcaggctcc accttgatct tctacaagta ttgtgaccat gagaacgctg
     3241 cctttaaaga tgtggccctg gtcctgacca tcctactgga ggaggaaaca ttagaagcaa
     3301 gtgtcagccc aagggaaact gaagagaaag tgcgagattt actttgggcg aggtttacca
     3361 actctaacac tcccagctcc ttcagccaca tggattcaga caaactgagt ggactgtgga
     3421 gccgtatttc ccacctggtg ctgcctgtcc agccagtgag gagcatagaa gaacagggct
     3481 gctttctata agctaagcac agagttggtt atgttcagca tgggtttatt aaaaagtcag
     3541 tttaaaagcc ttccatttat atggaaggag gttgacgaat gtgaggaaat agcctggaaa
     3601 gcacaaatga gcttatttga gaaaagaaat tttcattttt tactttttgt aaaatctttc
     3661 taatctaagc ttgacaaagc taaaagttga cctgactttt tttccttgcc tgcctttcaa
     3721 gcaaatcaga tatatataac tgaggaatgt tcttcaatcc aaaagtagag caacagaatc
     3781 attacatggg aagataatct tctcagtaac tacagagtga tttttgtttt cttgaggctc
     3841 taaggagcct tttggatagt atttggactc agattaaagc aattacaatt ataaaactga
     3901 aaattttttt aaaaatttct atcacatgtt aaatattttt aaaattcatt ttaataacct
     3961 agttgtggga ttacatctta tgcttttttg cacttttgaa tagtatgaaa aaggaaataa
     4021 gaattcaaat acttatttac ctgaatacta tatgtaaggc actgtgtttt tgttccgtta
     4081 atgagctctg agggaaaagc agctgtgctc aagaaatgtt cttaaaaatt gaaaacaatg
     4141 ggggaattgt ttataatcac tgcaaatgaa gaaattccaa ttggctgtgt cttcgcttca
     4201 attttcttga atgatttaga gcagtgattt tcaggctgtc tactggcacc cctccccttt
     4261 gtatcaaaga agttcttctt tttcccattt tatatattgg gctcctccat aagatttaat
     4321 tggatttaat tggaataaag agttccacta ataatgaagt ttgaaaatca ctgattaagt
     4381 gaaaaagcat cttggaagat aggaaaaaaa atgaaaatat taaaactcat gagtaggttg
     4441 aaaataaaat acaggtttat caagagacat gctatttatg aagaatgaag acttacagat
     4501 gaatagcaga atgtataaac tagtatttac tagcatattt ctatgctttt ggttaatctc
     4561 tgttatcatt tctgtctccc ctgaatggaa ttttataatt gtctacaatg agagtttgag
     4621 tgctttaaga agaacagatt ttaataacca gttgaatcat agatttttat ataggtacat
     4681 tagcataact ttaccatact gtttacttat tatacagtga tggaacattt atctaatgca
     4741 gttcatttct tgaccagcta gttagaagta tgattaggtt aacaattaga aaaatgcaag
     4801 agatgctata cttagtgaga ggaagtggaa atggtagata gattctaaga ggttttaaca
     4861 gctagtatta attgttagac catgttctgt gattgtaaga aagcttgaga aagatgctta
     4921 tggagacagt gattgttgat ttgcatctca accccgaagg cagaacttta gtaaaatgat
     4981 cctgacctaa tgaaggattt gtcccattac atggcatacc taggaactac caccatgaac
     5041 ctggaatatt tcagttaggt tttggcctct gaagtcatgt gactaaatta tggaaggatt
     5101 tttggaaaca gtaagaagat ataggggtct ttgttgatgc ctaaacagag agcataaaga
     5161 catgggggga agaatctatt tgaaagtgtt tgtcacagga aaaacagatc tgttctaacc
     5221 aagacctgac attgtgctca attgagcgta aggccatacc taaaggaact gttttcattt
     5281 gggactttgt gaaagactct tccgctagat ttgaggagag accttcctga acaaaaagtt
     5341 aaagcatagt gaatataata tcaatccaat ttaaaatcag tggaaactga agaaaaatct
     5401 atatgccata ttcaatattt tttgatattt ctggatctca gatgctagca ttacatcaca
     5461 caaaaccatt ggtgccttgt agaactggtg cctgctgacc tgtgctacct cagatttata
     5521 aagaaccaat atgaagtgtg catatctaat ctgtcagtga ctcagatcac agctgagaca
     5581 aagatggttt cgtcattcag ttgaatatgg tttttcatca tttcagtata atttagaaaa
     5641 tatttccaaa tgtcacaatt ttttttttta ctgttcagcc tttgttaaaa aaacgtgtct
     5701 ccttccatgt ataagtgcaa tcaactgaaa ctgttgtcag ttttctgtcc actatttcaa
     5761 aaatcatttt taaaagaagc agtatattag ctctgtgtcc tcatgaataa aatgatgatt
     5821 cttagagcat aaaactttgt attttttaaa tgtacaaata aaatctatta tctaatgtac
     5881 ccttaggtta atttctattc aattgtacct gtttttttac acttttcaag tttctaaatt
     5941 ttcttttggg tgtctagtag ttcatctttc attactataa tagatagttt gcttgtttga
     6001 cttagaacaa tgacttgtgg gcattttata tgatacccaa acatcaccat ttaattatta
     6061 tcatagaaca actctaattg ttatatatta atataaatca cttcttgagt gataccagag
     6121 ttctagaacc aactggtaga attataaact gtctcttgag ttttttcccc tgtggggtaa
     6181 attttaggtt tcccagttag ctcccaagca atgctgttgt ttctacttct aatttttaaa
     6241 tcaataaagt aatttaaata tatttcattt gaaagctgcc aagcttatgt ggtaaggttc
     6301 agcaggcctg tgacccacca tcctccaggt aatgacacgg ttgaacagtg ttcgcagctg
     6361 aggtggtttt gaccctttca cggtttttgt ttgttttata caggaaacgt aaggagcact
     6421 gatgataaaa tgtaacaaat tcagcatgta aaagtgatac taattcagca agatgatctt
     6481 ctccaggact atatttgcat acatctgacc agtttctatg cagaatagtc aggtgtctag
     6541 tacttcaaaa cctaatgtta agcagaagac atactcatta tagctgatta ccactgactg
     6601 agaataaagc ttatatccat acacagttta tttgtagagg agtactttca aataggaaca
     6661 tgataccttt tttcttttat catctgaaaa taaaatatag caattataaa aataaaccaa
     6721 gacatctttg taaagccctc aatatgtcat tttataaaag cagtttttag tctgcttttc
     6781 atgttgaatg tatggttaaa tattaatctt tattttaata ttttgtccac caatctgagc
     6841 ataatgtatt tcattttgaa atttgttgaa aagttagtgg ttctgttttc tcttgttttt
     6901 gattttttca aaaattaaag tacctttaac actgtcactt gttcaatggg aatgttgacg
     6961 tttgtcttta tatatgtatt gtgaatatta atgattatga atcactatca taatccatag
     7021 aaatacgatg aagtgattat tttaaaatat ttctaagggt atctatgaga ttatgaaata
     7081 ctgaggctta tgagtcacgt gggaaatact tgctatgaat aatatatttg caaagaaggt
     7141 gttaccaatt ctagagagaa ctaaagatat ctgtgtaaaa cagtttttcc agatgacttt
     7201 aaaatatgcc ttattcctat tatgttaagt tttaggtatt aggttgtaaa gtagctgatg
     7261 atgtgggcct aaatttgcct cattcagact gagactgggc tactgaaact cacttccaac
     7321 taatacacgg ccctatcagt tctgtatatg gcagtgcttc tcgatctgtt tttaaaaata
     7381 tacaaactag ttaagagcac tagccttatc caaagggcct gagaacacaa ccagtatccc
     7441 ctaatctgta aataattggt aaagatataa ataattcagt ttgcaatgcc tttccttcca
     7501 ggattatatg ctgtgtttac ttcagcttgt tttgatgtct ttaaaaatcc atagcttggt
     7561 tcctatactg ggaaatgatc tcccactttt cctcattgag gcttcataaa ctaactttgc
     7621 tcttggctaa gagcagttac ctgaacccaa aagaatgttt ttggacttgg gaagcagtgg
     7681 gctcagtagg tagggtagag ctggcaagaa gatgtgaagg cccgcggcag ttccagcctt
     7741 ccttctccct gtgcccacac tagcctcagc cttctcagcc caaagctcca ggcagctgct
     7801 tctggttgag cggattacag gagatttaaa tgtttgccat ccctgtccta aaagaaacgg
     7861 cacattaact ttcaaacaac tgcaatttgc tttttttttt ttttttacct aacaaaaaga
     7921 aacgggcttt gccagtatta atgtcaaaat tcttggcatc ccccttcttc cttatgtaac
     7981 catgattgtg tttgcatttg tttcttatag atgttgaaga atgtgcctta ttcaagttag
     8041 ttgtgcggtt ttacgaaaaa taaatctcct taattttt
//
LOCUS       XM_032653650            7902 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 2
            (TOR1AIP2), transcript variant X4, mRNA.
ACCESSION   XM_032653650
VERSION     XM_032653650.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7902
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7902
                     /gene="TOR1AIP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 26 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764746"
     CDS             1906..3315
                     /gene="TOR1AIP2"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 2"
                     /protein_id="XP_032509541.1"
                     /db_xref="GeneID:116764746"
                     /translation="MTDRGLRDPPEDPQKDLENDPSINCQAQETTVTASTTEEAQTPN
                     PASGLNKDHQEVESVGPGSTDTDGQSESPDETDDRKYPKDTEGENGQSFQGGEQGHPL
                     PSESLGEDLLDPEPNCSPSDKVGRTDARLVSSSAALPEHVSDRPGALQEPPVLDPQDT
                     QSPGHSSAGLESQDTLRKRLLAPEVERHQQETQKLEGNKENAQDTISKINKKRFQSYG
                     PICLGLLFLIVLLRSVNSYYSSPAQQVPKNPALEAFLVHFSHLKDKYPGQSSFLWQRG
                     RKFLQKHLNASHPTEPATIIFTAAREGRETLKCLSHHVANAYTSAQKVSAIQIDGAGK
                     TFQDSDKVKESVDNELSSGFEKGGKAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVA
                     LVLTILLEEETLEASVSPRETEEKVRDLLWARFTNSNTPSSFSHMDSDKLSGLWSRIS
                     HLVLPVQPVRSIEEQGCFL"
     misc_feature    1906..2565
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    2611..3309
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 catcccttca gaaatgtgtt attaggttta tcaaaactta ggaatttaac tagccagaac
       61 tactctttaa gacaatataa aaataaacta ttcaccaatg atgctttaca acaaaattac
      121 attactttag aaaatttaaa agatgggcta aagcagaaga atgaaaaacg tgtagatcct
      181 tatagattta ctaaaataga agtatatcct ttatgtgtta aaaaaaatta acttatacaa
      241 ctgcaccagc ctgtgtggga gagtcaatac aatttaacat atatattttt tgccttctaa
      301 agcattcttc cagatattgg agatacagaa tgaacataag cacggaagta taacgtggtc
      361 cttcaaatac ataaatatat atgtagggtc tttgtcttca gaagttgaca atcttaagag
      421 agataaaact aacatatata tgggttaaac tgtcttgaat tgctactccc aatactaatt
      481 tacattatct ttaacatagt ttccaaaatc aacacatctt ccaatgtggc agcacgtgtt
      541 aggtcgtaaa tgtgcagcct attactctgc tctaaactga aaatccacct cctcttcatc
      601 atatccatca aaggtctatc actaactatg taattccatt atgattcaaa tcccctgatt
      661 ttacctcata ggtgccctac ggggagccaa catgaaactt catctctgac tcagtgttag
      721 atggggagag ggggcagggt gggagacgat ggactaaggg agttgattca tctgtgactt
      781 tcctaaaact atacaatcac cttgtcagta tccttgcggc ccattcagac gacaactaat
      841 taaaagtctt gctttgtctg gctactagtt aaccattgac ggtccccaac atgcaaattt
      901 ttgccagaga ccaccacact ctagaaagag cgatcagctc aagtttatca ggcactggga
      961 agcttcaagt tcaggataac tgccttaccc tatttcggtg taagtatttg ggtgggccct
     1021 caaatcaatt aatcaactac acttgttctc aaaacggcca ctcacaaaat tcccctccct
     1081 ctctccccac ctaggtagtg atggagaaag actggaaggt tagatgagaa ccaaaattct
     1141 cagctaggga cttctggcct ctgagagtta aaggaggaaa tggaactggc tttggtagaa
     1201 acatccgcag gacaaagaga accgatatga aacccagccc ggagtgattc agtgtcccgc
     1261 ctgccgccta actcgccgtc ccaacgtgca agcctgcaga aaagaggcaa tcctgacacc
     1321 cctaaattga tgcccaagga tgcacgcggc tccacggctc tgctcaagta gctccgcacg
     1381 actgccttcc cttccagtgc ccccgcccct gccgctttcc cgccagcggt cggggcggac
     1441 cgggcgtcgg gtcgcacgcc catccgggcg gagaagcccc gagggggtga ggtccagaaa
     1501 ggcacacgcc cggccgaggc gcacacgccc tctgcgcgcg cacgctcgcg gcactccctc
     1561 cctggctcgg ggctgagact gttacctctg tcggcctcac cttcggataa atgggagtcc
     1621 cgtaatcctc tccgggtcgt aatcggagac ggctgcagcg gaggcggctg tgagtgctgc
     1681 tgctgctgaa ggcgagtagc ccttcgcgtc ttcatctcgg cttcctggag tcgcggctgc
     1741 ctccgctgcc gagaccgaag tcactgtata tatgccttgt ttcctgggtc cacgggaagc
     1801 atgagcctgt tgggacttgg gacaagaaga aaacaagaca tctgcacaag gaaaaccaga
     1861 cactaacaaa aagtatccca aagtctgaag agataaaacg caaacatgac cgacagagga
     1921 cttagggatc ctccagagga ccctcaaaag gatttggaaa atgatccatc aataaattgt
     1981 caggcacagg agactacagt gacagcaagt accactgaag aagctcagac cccaaaccct
     2041 gcctctggtc ttaacaaaga ccaccaagag gtagaatcag ttggtccagg aagtacagat
     2101 acagatggtc aatcagaaag tccagatgaa acagatgata ggaaatatcc aaaggataca
     2161 gaaggtgaga acggccagag tttccagggt ggagaacaag ggcatccact cccttcagaa
     2221 agtctgggtg aagacctctt ggatccagaa cccaactgtt ctccaagtga caaggtggga
     2281 agaacagacg cacgcttagt gagcagctct gcagccctcc ctgagcacgt gagcgacaga
     2341 cccggagctt tgcaggagcc acctgtcctt gaccctcagg atacccagag tcctgggcat
     2401 tccagtgcag ggctggagag ccaggacaca ctgaggaagc gactgctggc accagaggtt
     2461 gagagacatc aacaagaaac acaaaaattg gaaggaaaca aggagaatgc acaggatacc
     2521 ataagcaaga ttaataaaaa gcgttttcag agctatggcc ccatctgtct tggcctcctg
     2581 tttctgattg ttttgctacg ttctgttaat agctattatt cctctccggc ccagcaagtg
     2641 cccaaaaatc cagctttgga ggccttcttg gttcatttca gccatttgaa ggataaatat
     2701 ccaggccaga gttcctttct gtggcagaga ggacgtaagt ttctccagaa gcacctcaat
     2761 gcttcacacc ccactgagcc agccaccatc atatttacag cagctcgaga gggaagagag
     2821 accctgaagt gcctcagcca ccacgttgcg aatgcctaca cgtctgccca gaaagtctct
     2881 gccattcaga ttgatggagc tggaaaaacc tttcaggaca gtgataaggt caaggagtca
     2941 gttgacaacg agctgagctc tggatttgag aagggcggga aggctgctgt ggtccaccgc
     3001 tttgaatccc ttcctgcagg ctccaccttg atcttctaca agtattgtga ccatgagaac
     3061 gctgccttta aagatgtggc cctggtcctg accatcctac tggaggagga aacattagaa
     3121 gcaagtgtca gcccaaggga aactgaagag aaagtgcgag atttactttg ggcgaggttt
     3181 accaactcta acactcccag ctccttcagc cacatggatt cagacaaact gagtggactg
     3241 tggagccgta tttcccacct ggtgctgcct gtccagccag tgaggagcat agaagaacag
     3301 ggctgctttc tataagctaa gcacagagtt ggttatgttc agcatgggtt tattaaaaag
     3361 tcagtttaaa agccttccat ttatatggaa ggaggttgac gaatgtgagg aaatagcctg
     3421 gaaagcacaa atgagcttat ttgagaaaag aaattttcat tttttacttt ttgtaaaatc
     3481 tttctaatct aagcttgaca aagctaaaag ttgacctgac tttttttcct tgcctgcctt
     3541 tcaagcaaat cagatatata taactgagga atgttcttca atccaaaagt agagcaacag
     3601 aatcattaca tgggaagata atcttctcag taactacaga gtgatttttg ttttcttgag
     3661 gctctaagga gccttttgga tagtatttgg actcagatta aagcaattac aattataaaa
     3721 ctgaaaattt ttttaaaaat ttctatcaca tgttaaatat ttttaaaatt cattttaata
     3781 acctagttgt gggattacat cttatgcttt tttgcacttt tgaatagtat gaaaaaggaa
     3841 ataagaattc aaatacttat ttacctgaat actatatgta aggcactgtg tttttgttcc
     3901 gttaatgagc tctgagggaa aagcagctgt gctcaagaaa tgttcttaaa aattgaaaac
     3961 aatgggggaa ttgtttataa tcactgcaaa tgaagaaatt ccaattggct gtgtcttcgc
     4021 ttcaattttc ttgaatgatt tagagcagtg attttcaggc tgtctactgg cacccctccc
     4081 ctttgtatca aagaagttct tctttttccc attttatata ttgggctcct ccataagatt
     4141 taattggatt taattggaat aaagagttcc actaataatg aagtttgaaa atcactgatt
     4201 aagtgaaaaa gcatcttgga agataggaaa aaaaatgaaa atattaaaac tcatgagtag
     4261 gttgaaaata aaatacaggt ttatcaagag acatgctatt tatgaagaat gaagacttac
     4321 agatgaatag cagaatgtat aaactagtat ttactagcat atttctatgc ttttggttaa
     4381 tctctgttat catttctgtc tcccctgaat ggaattttat aattgtctac aatgagagtt
     4441 tgagtgcttt aagaagaaca gattttaata accagttgaa tcatagattt ttatataggt
     4501 acattagcat aactttacca tactgtttac ttattataca gtgatggaac atttatctaa
     4561 tgcagttcat ttcttgacca gctagttaga agtatgatta ggttaacaat tagaaaaatg
     4621 caagagatgc tatacttagt gagaggaagt ggaaatggta gatagattct aagaggtttt
     4681 aacagctagt attaattgtt agaccatgtt ctgtgattgt aagaaagctt gagaaagatg
     4741 cttatggaga cagtgattgt tgatttgcat ctcaaccccg aaggcagaac tttagtaaaa
     4801 tgatcctgac ctaatgaagg atttgtccca ttacatggca tacctaggaa ctaccaccat
     4861 gaacctggaa tatttcagtt aggttttggc ctctgaagtc atgtgactaa attatggaag
     4921 gatttttgga aacagtaaga agatataggg gtctttgttg atgcctaaac agagagcata
     4981 aagacatggg gggaagaatc tatttgaaag tgtttgtcac aggaaaaaca gatctgttct
     5041 aaccaagacc tgacattgtg ctcaattgag cgtaaggcca tacctaaagg aactgttttc
     5101 atttgggact ttgtgaaaga ctcttccgct agatttgagg agagaccttc ctgaacaaaa
     5161 agttaaagca tagtgaatat aatatcaatc caatttaaaa tcagtggaaa ctgaagaaaa
     5221 atctatatgc catattcaat attttttgat atttctggat ctcagatgct agcattacat
     5281 cacacaaaac cattggtgcc ttgtagaact ggtgcctgct gacctgtgct acctcagatt
     5341 tataaagaac caatatgaag tgtgcatatc taatctgtca gtgactcaga tcacagctga
     5401 gacaaagatg gtttcgtcat tcagttgaat atggtttttc atcatttcag tataatttag
     5461 aaaatatttc caaatgtcac aatttttttt tttactgttc agcctttgtt aaaaaaacgt
     5521 gtctccttcc atgtataagt gcaatcaact gaaactgttg tcagttttct gtccactatt
     5581 tcaaaaatca tttttaaaag aagcagtata ttagctctgt gtcctcatga ataaaatgat
     5641 gattcttaga gcataaaact ttgtattttt taaatgtaca aataaaatct attatctaat
     5701 gtacccttag gttaatttct attcaattgt acctgttttt ttacactttt caagtttcta
     5761 aattttcttt tgggtgtcta gtagttcatc tttcattact ataatagata gtttgcttgt
     5821 ttgacttaga acaatgactt gtgggcattt tatatgatac ccaaacatca ccatttaatt
     5881 attatcatag aacaactcta attgttatat attaatataa atcacttctt gagtgatacc
     5941 agagttctag aaccaactgg tagaattata aactgtctct tgagtttttt cccctgtggg
     6001 gtaaatttta ggtttcccag ttagctccca agcaatgctg ttgtttctac ttctaatttt
     6061 taaatcaata aagtaattta aatatatttc atttgaaagc tgccaagctt atgtggtaag
     6121 gttcagcagg cctgtgaccc accatcctcc aggtaatgac acggttgaac agtgttcgca
     6181 gctgaggtgg ttttgaccct ttcacggttt ttgtttgttt tatacaggaa acgtaaggag
     6241 cactgatgat aaaatgtaac aaattcagca tgtaaaagtg atactaattc agcaagatga
     6301 tcttctccag gactatattt gcatacatct gaccagtttc tatgcagaat agtcaggtgt
     6361 ctagtacttc aaaacctaat gttaagcaga agacatactc attatagctg attaccactg
     6421 actgagaata aagcttatat ccatacacag tttatttgta gaggagtact ttcaaatagg
     6481 aacatgatac cttttttctt ttatcatctg aaaataaaat atagcaatta taaaaataaa
     6541 ccaagacatc tttgtaaagc cctcaatatg tcattttata aaagcagttt ttagtctgct
     6601 tttcatgttg aatgtatggt taaatattaa tctttatttt aatattttgt ccaccaatct
     6661 gagcataatg tatttcattt tgaaatttgt tgaaaagtta gtggttctgt tttctcttgt
     6721 ttttgatttt ttcaaaaatt aaagtacctt taacactgtc acttgttcaa tgggaatgtt
     6781 gacgtttgtc tttatatatg tattgtgaat attaatgatt atgaatcact atcataatcc
     6841 atagaaatac gatgaagtga ttattttaaa atatttctaa gggtatctat gagattatga
     6901 aatactgagg cttatgagtc acgtgggaaa tacttgctat gaataatata tttgcaaaga
     6961 aggtgttacc aattctagag agaactaaag atatctgtgt aaaacagttt ttccagatga
     7021 ctttaaaata tgccttattc ctattatgtt aagttttagg tattaggttg taaagtagct
     7081 gatgatgtgg gcctaaattt gcctcattca gactgagact gggctactga aactcacttc
     7141 caactaatac acggccctat cagttctgta tatggcagtg cttctcgatc tgtttttaaa
     7201 aatatacaaa ctagttaaga gcactagcct tatccaaagg gcctgagaac acaaccagta
     7261 tcccctaatc tgtaaataat tggtaaagat ataaataatt cagtttgcaa tgcctttcct
     7321 tccaggatta tatgctgtgt ttacttcagc ttgttttgat gtctttaaaa atccatagct
     7381 tggttcctat actgggaaat gatctcccac ttttcctcat tgaggcttca taaactaact
     7441 ttgctcttgg ctaagagcag ttacctgaac ccaaaagaat gtttttggac ttgggaagca
     7501 gtgggctcag taggtagggt agagctggca agaagatgtg aaggcccgcg gcagttccag
     7561 ccttccttct ccctgtgccc acactagcct cagccttctc agcccaaagc tccaggcagc
     7621 tgcttctggt tgagcggatt acaggagatt taaatgtttg ccatccctgt cctaaaagaa
     7681 acggcacatt aactttcaaa caactgcaat ttgctttttt tttttttttt acctaacaaa
     7741 aagaaacggg ctttgccagt attaatgtca aaattcttgg catccccctt cttccttatg
     7801 taaccatgat tgtgtttgca tttgtttctt atagatgttg aagaatgtgc cttattcaag
     7861 ttagttgtgc ggttttacga aaaataaatc tccttaattt tt
//
LOCUS       XM_032653660            6357 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin 1A interacting protein 2
            (TOR1AIP2), transcript variant X5, mRNA.
ACCESSION   XM_032653660
VERSION     XM_032653660.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6357
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6357
                     /gene="TOR1AIP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 22 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764746"
     CDS             361..1770
                     /gene="TOR1AIP2"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 2"
                     /protein_id="XP_032509551.1"
                     /db_xref="GeneID:116764746"
                     /translation="MTDRGLRDPPEDPQKDLENDPSINCQAQETTVTASTTEEAQTPN
                     PASGLNKDHQEVESVGPGSTDTDGQSESPDETDDRKYPKDTEGENGQSFQGGEQGHPL
                     PSESLGEDLLDPEPNCSPSDKVGRTDARLVSSSAALPEHVSDRPGALQEPPVLDPQDT
                     QSPGHSSAGLESQDTLRKRLLAPEVERHQQETQKLEGNKENAQDTISKINKKRFQSYG
                     PICLGLLFLIVLLRSVNSYYSSPAQQVPKNPALEAFLVHFSHLKDKYPGQSSFLWQRG
                     RKFLQKHLNASHPTEPATIIFTAAREGRETLKCLSHHVANAYTSAQKVSAIQIDGAGK
                     TFQDSDKVKESVDNELSSGFEKGGKAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVA
                     LVLTILLEEETLEASVSPRETEEKVRDLLWARFTNSNTPSSFSHMDSDKLSGLWSRIS
                     HLVLPVQPVRSIEEQGCFL"
     misc_feature    361..1020
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, N-terminal;
                     Region: LAP1_N; pfam20443"
                     /db_xref="CDD:466592"
     misc_feature    1066..1764
                     /gene="TOR1AIP2"
                     /note="Lamina-associated polypeptide 1, AAA+ activator
                     domain; Region: LAP1_C; pfam05609"
                     /db_xref="CDD:461691"
ORIGIN      
        1 cacgtgggca gggacaggac gacgttctgt tccgccgcgt ccgaggggag cagctcagcg
       61 ttgtggagca gaaagaacac tcttaagggc tctcctgaca ttgacagtcg acgatttaaa
      121 accccgctag aattttacta cacggtctgt ggttgattga atccgaggat gcagaacaat
      181 ggctacagag gaactgcata tacgaagagc tgacttcact gtatatatgc cttgtttcct
      241 gggtccacgg gaagcatgag cctgttggga cttgggacaa gaagaaaaca agacatctgc
      301 acaaggaaaa ccagacacta acaaaaagta tcccaaagtc tgaagagata aaacgcaaac
      361 atgaccgaca gaggacttag ggatcctcca gaggaccctc aaaaggattt ggaaaatgat
      421 ccatcaataa attgtcaggc acaggagact acagtgacag caagtaccac tgaagaagct
      481 cagaccccaa accctgcctc tggtcttaac aaagaccacc aagaggtaga atcagttggt
      541 ccaggaagta cagatacaga tggtcaatca gaaagtccag atgaaacaga tgataggaaa
      601 tatccaaagg atacagaagg tgagaacggc cagagtttcc agggtggaga acaagggcat
      661 ccactccctt cagaaagtct gggtgaagac ctcttggatc cagaacccaa ctgttctcca
      721 agtgacaagg tgggaagaac agacgcacgc ttagtgagca gctctgcagc cctccctgag
      781 cacgtgagcg acagacccgg agctttgcag gagccacctg tccttgaccc tcaggatacc
      841 cagagtcctg ggcattccag tgcagggctg gagagccagg acacactgag gaagcgactg
      901 ctggcaccag aggttgagag acatcaacaa gaaacacaaa aattggaagg aaacaaggag
      961 aatgcacagg ataccataag caagattaat aaaaagcgtt ttcagagcta tggccccatc
     1021 tgtcttggcc tcctgtttct gattgttttg ctacgttctg ttaatagcta ttattcctct
     1081 ccggcccagc aagtgcccaa aaatccagct ttggaggcct tcttggttca tttcagccat
     1141 ttgaaggata aatatccagg ccagagttcc tttctgtggc agagaggacg taagtttctc
     1201 cagaagcacc tcaatgcttc acaccccact gagccagcca ccatcatatt tacagcagct
     1261 cgagagggaa gagagaccct gaagtgcctc agccaccacg ttgcgaatgc ctacacgtct
     1321 gcccagaaag tctctgccat tcagattgat ggagctggaa aaacctttca ggacagtgat
     1381 aaggtcaagg agtcagttga caacgagctg agctctggat ttgagaaggg cgggaaggct
     1441 gctgtggtcc accgctttga atcccttcct gcaggctcca ccttgatctt ctacaagtat
     1501 tgtgaccatg agaacgctgc ctttaaagat gtggccctgg tcctgaccat cctactggag
     1561 gaggaaacat tagaagcaag tgtcagccca agggaaactg aagagaaagt gcgagattta
     1621 ctttgggcga ggtttaccaa ctctaacact cccagctcct tcagccacat ggattcagac
     1681 aaactgagtg gactgtggag ccgtatttcc cacctggtgc tgcctgtcca gccagtgagg
     1741 agcatagaag aacagggctg ctttctataa gctaagcaca gagttggtta tgttcagcat
     1801 gggtttatta aaaagtcagt ttaaaagcct tccatttata tggaaggagg ttgacgaatg
     1861 tgaggaaata gcctggaaag cacaaatgag cttatttgag aaaagaaatt ttcatttttt
     1921 actttttgta aaatctttct aatctaagct tgacaaagct aaaagttgac ctgacttttt
     1981 ttccttgcct gcctttcaag caaatcagat atatataact gaggaatgtt cttcaatcca
     2041 aaagtagagc aacagaatca ttacatggga agataatctt ctcagtaact acagagtgat
     2101 ttttgttttc ttgaggctct aaggagcctt ttggatagta tttggactca gattaaagca
     2161 attacaatta taaaactgaa aattttttta aaaatttcta tcacatgtta aatattttta
     2221 aaattcattt taataaccta gttgtgggat tacatcttat gcttttttgc acttttgaat
     2281 agtatgaaaa aggaaataag aattcaaata cttatttacc tgaatactat atgtaaggca
     2341 ctgtgttttt gttccgttaa tgagctctga gggaaaagca gctgtgctca agaaatgttc
     2401 ttaaaaattg aaaacaatgg gggaattgtt tataatcact gcaaatgaag aaattccaat
     2461 tggctgtgtc ttcgcttcaa ttttcttgaa tgatttagag cagtgatttt caggctgtct
     2521 actggcaccc ctcccctttg tatcaaagaa gttcttcttt ttcccatttt atatattggg
     2581 ctcctccata agatttaatt ggatttaatt ggaataaaga gttccactaa taatgaagtt
     2641 tgaaaatcac tgattaagtg aaaaagcatc ttggaagata ggaaaaaaaa tgaaaatatt
     2701 aaaactcatg agtaggttga aaataaaata caggtttatc aagagacatg ctatttatga
     2761 agaatgaaga cttacagatg aatagcagaa tgtataaact agtatttact agcatatttc
     2821 tatgcttttg gttaatctct gttatcattt ctgtctcccc tgaatggaat tttataattg
     2881 tctacaatga gagtttgagt gctttaagaa gaacagattt taataaccag ttgaatcata
     2941 gatttttata taggtacatt agcataactt taccatactg tttacttatt atacagtgat
     3001 ggaacattta tctaatgcag ttcatttctt gaccagctag ttagaagtat gattaggtta
     3061 acaattagaa aaatgcaaga gatgctatac ttagtgagag gaagtggaaa tggtagatag
     3121 attctaagag gttttaacag ctagtattaa ttgttagacc atgttctgtg attgtaagaa
     3181 agcttgagaa agatgcttat ggagacagtg attgttgatt tgcatctcaa ccccgaaggc
     3241 agaactttag taaaatgatc ctgacctaat gaaggatttg tcccattaca tggcatacct
     3301 aggaactacc accatgaacc tggaatattt cagttaggtt ttggcctctg aagtcatgtg
     3361 actaaattat ggaaggattt ttggaaacag taagaagata taggggtctt tgttgatgcc
     3421 taaacagaga gcataaagac atggggggaa gaatctattt gaaagtgttt gtcacaggaa
     3481 aaacagatct gttctaacca agacctgaca ttgtgctcaa ttgagcgtaa ggccatacct
     3541 aaaggaactg ttttcatttg ggactttgtg aaagactctt ccgctagatt tgaggagaga
     3601 ccttcctgaa caaaaagtta aagcatagtg aatataatat caatccaatt taaaatcagt
     3661 ggaaactgaa gaaaaatcta tatgccatat tcaatatttt ttgatatttc tggatctcag
     3721 atgctagcat tacatcacac aaaaccattg gtgccttgta gaactggtgc ctgctgacct
     3781 gtgctacctc agatttataa agaaccaata tgaagtgtgc atatctaatc tgtcagtgac
     3841 tcagatcaca gctgagacaa agatggtttc gtcattcagt tgaatatggt ttttcatcat
     3901 ttcagtataa tttagaaaat atttccaaat gtcacaattt ttttttttac tgttcagcct
     3961 ttgttaaaaa aacgtgtctc cttccatgta taagtgcaat caactgaaac tgttgtcagt
     4021 tttctgtcca ctatttcaaa aatcattttt aaaagaagca gtatattagc tctgtgtcct
     4081 catgaataaa atgatgattc ttagagcata aaactttgta ttttttaaat gtacaaataa
     4141 aatctattat ctaatgtacc cttaggttaa tttctattca attgtacctg tttttttaca
     4201 cttttcaagt ttctaaattt tcttttgggt gtctagtagt tcatctttca ttactataat
     4261 agatagtttg cttgtttgac ttagaacaat gacttgtggg cattttatat gatacccaaa
     4321 catcaccatt taattattat catagaacaa ctctaattgt tatatattaa tataaatcac
     4381 ttcttgagtg ataccagagt tctagaacca actggtagaa ttataaactg tctcttgagt
     4441 tttttcccct gtggggtaaa ttttaggttt cccagttagc tcccaagcaa tgctgttgtt
     4501 tctacttcta atttttaaat caataaagta atttaaatat atttcatttg aaagctgcca
     4561 agcttatgtg gtaaggttca gcaggcctgt gacccaccat cctccaggta atgacacggt
     4621 tgaacagtgt tcgcagctga ggtggttttg accctttcac ggtttttgtt tgttttatac
     4681 aggaaacgta aggagcactg atgataaaat gtaacaaatt cagcatgtaa aagtgatact
     4741 aattcagcaa gatgatcttc tccaggacta tatttgcata catctgacca gtttctatgc
     4801 agaatagtca ggtgtctagt acttcaaaac ctaatgttaa gcagaagaca tactcattat
     4861 agctgattac cactgactga gaataaagct tatatccata cacagtttat ttgtagagga
     4921 gtactttcaa ataggaacat gatacctttt ttcttttatc atctgaaaat aaaatatagc
     4981 aattataaaa ataaaccaag acatctttgt aaagccctca atatgtcatt ttataaaagc
     5041 agtttttagt ctgcttttca tgttgaatgt atggttaaat attaatcttt attttaatat
     5101 tttgtccacc aatctgagca taatgtattt cattttgaaa tttgttgaaa agttagtggt
     5161 tctgttttct cttgtttttg attttttcaa aaattaaagt acctttaaca ctgtcacttg
     5221 ttcaatggga atgttgacgt ttgtctttat atatgtattg tgaatattaa tgattatgaa
     5281 tcactatcat aatccataga aatacgatga agtgattatt ttaaaatatt tctaagggta
     5341 tctatgagat tatgaaatac tgaggcttat gagtcacgtg ggaaatactt gctatgaata
     5401 atatatttgc aaagaaggtg ttaccaattc tagagagaac taaagatatc tgtgtaaaac
     5461 agtttttcca gatgacttta aaatatgcct tattcctatt atgttaagtt ttaggtatta
     5521 ggttgtaaag tagctgatga tgtgggccta aatttgcctc attcagactg agactgggct
     5581 actgaaactc acttccaact aatacacggc cctatcagtt ctgtatatgg cagtgcttct
     5641 cgatctgttt ttaaaaatat acaaactagt taagagcact agccttatcc aaagggcctg
     5701 agaacacaac cagtatcccc taatctgtaa ataattggta aagatataaa taattcagtt
     5761 tgcaatgcct ttccttccag gattatatgc tgtgtttact tcagcttgtt ttgatgtctt
     5821 taaaaatcca tagcttggtt cctatactgg gaaatgatct cccacttttc ctcattgagg
     5881 cttcataaac taactttgct cttggctaag agcagttacc tgaacccaaa agaatgtttt
     5941 tggacttggg aagcagtggg ctcagtaggt agggtagagc tggcaagaag atgtgaaggc
     6001 ccgcggcagt tccagccttc cttctccctg tgcccacact agcctcagcc ttctcagccc
     6061 aaagctccag gcagctgctt ctggttgagc ggattacagg agatttaaat gtttgccatc
     6121 cctgtcctaa aagaaacggc acattaactt tcaaacaact gcaatttgct tttttttttt
     6181 tttttaccta acaaaaagaa acgggctttg ccagtattaa tgtcaaaatt cttggcatcc
     6241 cccttcttcc ttatgtaacc atgattgtgt ttgcatttgt ttcttataga tgttgaagaa
     6301 tgtgccttat tcaagttagt tgtgcggttt tacgaaaaat aaatctcctt aattttt
//
LOCUS       XM_032653676            1034 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin-1A-interacting protein 2
            (LOC116764762), mRNA.
ACCESSION   XM_032653676
VERSION     XM_032653676.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1034
                     /gene="LOC116764762"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764762"
     CDS             501..896
                     /gene="LOC116764762"
                     /codon_start=1
                     /product="torsin-1A-interacting protein 2"
                     /protein_id="XP_032509567.1"
                     /db_xref="GeneID:116764762"
                     /translation="MFSDNSHCPDCGQQWFPSLELGHWLYQTELVENECYQVFLDRIN
                     RADYCPECYPDNPANRSLVLPWSFPLEWAPQNLTRWTFEKACHPFLLGPPLVRKRIHD
                     SRVAGFNPALQLILTRTDKTLNKKLGQSK"
ORIGIN      
        1 gacttgggta cgtgtattac aacggcaaga gtgccagcgc ccaccaaaga cccattggac
       61 ctgtcagctc ctctgtttca ccaagcagac ataataactt accagcaaag cagagtaagc
      121 cagatgcctc tgcatgatac caccagctga taacacacaa gaaaaaataa ttaacttaga
      181 ctagaaccct gtcttttctt gagaagctgg gatttaaagg agctattctg agatctgtgc
      241 tgttagtaag tgactaataa catagactgg atcagtccct gagttcagag actgggttgc
      301 aagtgagtga aaaatagaca acgaaatctt gaagaattgc acggaggtgc aagccacatt
      361 ttaccctctc caagtaatgg tggttggact gagaaagtgc taaaccaaac ctgtaatagg
      421 actggttgtt tgggtgtctc tttttatcat tgttgcctct tacagttaca ttgctttctg
      481 tgttgtctct ctaggtccca atgttctcag ataattcaca ttgccctgac tgtggacagc
      541 aatggttccc tagtttagaa ctaggccatt ggttgtacca aactgaactg gttgagaatg
      601 aatgttacca agtattctta gaccgtatta acagagctga ttattgccct gagtgttatc
      661 ctgataatcc tgctaataga agccttgttc ttccttggtc tttcccactt gagtgggctc
      721 cccagaatct taccaggtgg acctttgaaa aagcttgcca cccatttctt ctgggtcctc
      781 cactggttag aaaaaggata catgactcta gagttgctgg ttttaaccct gcattacagt
      841 taatcctgac cagaacagat aaaaccttga acaaaaaact tggccaaagc aaataacttc
      901 tgaaacagtc aaaatcatgg agactctaga gggttttgta ctagtagccc aaggaagatg
      961 gaaaaatgac tcctttctat atctgatcca gactgtcact actctgggaa actgcttaaa
     1021 ttgttggatc tgct
//
LOCUS       XM_032653688            1433 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus V-set and immunoglobulin domain
            containing 8 (VSIG8), mRNA.
ACCESSION   XM_032653688
VERSION     XM_032653688.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1433
                     /gene="VSIG8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 82% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764766"
     CDS             1..1227
                     /gene="VSIG8"
                     /codon_start=1
                     /product="V-set and immunoglobulin domain-containing
                     protein 8"
                     /protein_id="XP_032509579.1"
                     /db_xref="GeneID:116764766"
                     /translation="MRVHGAFHLLLVCLSPALLPAVRISGDDKEVLNLAEGDSVRLNC
                     PYILDPEDSGSDALGIEWMQVNPEPSRQEKVFLSYRDKNINHGDLPNLQQRVHFAAPD
                     PSQYDASINFSNLQVADAAIYECRVKKTTVATRRVIITVSARPVVPKCWFEGHMSYGH
                     DVMLKCFVSGGSPPFTYKWNKLRGTHHPYRASSYQSQDTFQSEFSYDESFSSISQGMS
                     HGDLMLLHLSHKDDGLYQCTVANHAGHSVCVVEVKVSGGWHIGIIIGIVLGSLLLLGC
                     LMLGIWGLVCCCCRRPRGAFFCRGPVRRNACCDLPNDIREDDVAPGCKAKGRGSSVTH
                     ILGYPMQKIRHSLSLKYAPAHCEGPEDLALASSAAAAALDCKADQSQVYVKVQSAEPA
                     ACAAEGPLPCKDGLLV"
     misc_feature    100..387
                     /gene="VSIG8"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    118..132
                     /gene="VSIG8"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    175..189
                     /gene="VSIG8"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    322..336
                     /gene="VSIG8"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    364..381
                     /gene="VSIG8"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    475..762
                     /gene="VSIG8"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    484..498
                     /gene="VSIG8"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    526..540
                     /gene="VSIG8"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    658..672
                     /gene="VSIG8"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    700..717
                     /gene="VSIG8"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 atgagagtcc atggagcatt ccaccttctg ctcgtgtgcc tgagcccagc actgctgccc
       61 gctgtgcgga tcagtgggga tgataaagaa gtcctgaacc tggcagaagg tgacagtgtg
      121 agactgaact gcccctacat cctggaccct gaggactctg gttctgatgc tctgggcatc
      181 gagtggatgc aggtcaaccc agaaccctca cgtcaggaga aagtgttcct tagttaccgg
      241 gacaagaaca tcaaccatgg cgacctcccc aatctgcagc agagggtcca ctttgcagcc
      301 ccagatccca gccagtacga tgcctccatc aacttctcga acctgcaggt agccgacgca
      361 gctatctatg agtgccgggt gaagaagacc accgtggcca cccggagggt catcatcact
      421 gtctcagcac ggcctgtggt gcccaagtgc tggtttgagg gccacatgtc atacggccac
      481 gatgtgatgc tgaagtgctt tgtcagtggg ggcagcccgc ctttcaccta caagtggaac
      541 aagctcaggg ggacacacca cccctaccgt gccagttcct accagtccca ggacaccttc
      601 cagtctgagt tctcctacga cgagtccttc agctccataa gtcaaggcat gagccatggt
      661 gatttgatgt tgctgcacct ctcccacaag gatgatgggc tgtatcagtg cacagtggcc
      721 aaccatgcag gccacagcgt atgtgtggtg gaggtgaagg tctcaggagg ctggcacata
      781 ggaataatca ttggcatagt gctgggctct ttactcttgc tgggctgcct gatgttgggc
      841 atctgggggc tcgtctgctg ctgctgcagg cggccccgcg gtgccttctt ctgccgtggc
      901 ccggtccgca gaaatgcctg ctgcgacttg cctaatgata tcagagagga cgacgtggcg
      961 cccgggtgca aggccaaagg gcgcggcagc agcgttaccc acatcctggg gtacccgatg
     1021 cagaagatca ggcactccct gagcctcaaa tacgcgcctg ctcactgcga aggccccgag
     1081 gacttggccc tggcgtccag cgccgccgcc gccgctctag actgcaaagc ggaccagtcc
     1141 caggtctacg tcaaggtcca gagtgcagag ccagccgcct gcgccgccga ggggccgctg
     1201 ccgtgcaagg atggcctcct ggtgtgagcg cgcggcgccc ggctcctgcc cggccaggag
     1261 gagggtgcgg gctctctgcc tgcagctggg gacgcgctcg ggccggcgcc gacctcgcct
     1321 gcccagggcc gcctggcggc agggggcctg gaagagtttc cctcgggagc tgagttgggc
     1381 ggctgcgcct cctcccctaa agtgggaggg ggaggaggag ggaacagagg cca
//
LOCUS       XM_032653704            3448 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif containing 46 (TRIM46),
            transcript variant X1, mRNA.
ACCESSION   XM_032653704
VERSION     XM_032653704.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3448
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3448
                     /gene="TRIM46"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764768"
     CDS             350..2707
                     /gene="TRIM46"
                     /codon_start=1
                     /product="tripartite motif-containing protein 46 isoform
                     X1"
                     /protein_id="XP_032509595.1"
                     /db_xref="GeneID:116764768"
                     /translation="MATRARLSQGRCQLCSPQPLPSPSLRVPPSFVSAAPLTGMAAKR
                     GTKTSMKNMEKELLCPVCQEMYKQPLVLPCTHNVCQACAREVLGQQGYVGHGGDPSSE
                     PTSPASTPSTRSPRLSRRTLPKPDRLDRLLKSGFGTYPGRKRGALHPQVIMFPCPACQ
                     GDVELGERGLAGLFRNLTLERVVERYRQSVSVGGAILCQLCKPPPLEATKGCTECRAT
                     FCNECFKLFHPWGTQKAQHEPTLPTLSFRPKGLMCPDHKEEVTHYCKTCQRLVCQLCR
                     VRRTHSGHKITPVLSAYQALKDKLTKSLTYILGNQDTVQTQICELEETVRHTEVSGQQ
                     AKEEVSQLVRGLGAVLEERRASLLQAIEECQQERLARLSAQIQEHRSLLDGSGLVGYA
                     QEVLKETDQPCFVQAAKQLHNRIARATEALQMFRPAASSSFRHCQLDVGREMKLLTEL
                     NFLRVPEAPVIDTQRTFAYDQIFLCWRLPPHSPPAWHYTIEFRRTDVPAQPGPTRWQR
                     REEVRGTSALLENPDTGSVYVLRVRGCNKAGYGEYSEDVHLHTPPAPVLHFFLDGRWG
                     TSRERLAISKDQRAVRSVPGLPLLLAAERLLTGCHLSVDVVLGDVAVTQGRSYWACAV
                     DPASYLVKVGVGLESKLQESFQGAPDVISPRYDPDSGHDSGAEDATVEASPPFAFLTI
                     GMGKILLGAGASSNAGLTGRDGPAASCTVPLPPRLGICLDYERGRVSFLDAVSFRGLL
                     ECPLDCSGPVCPAFCFIGGGAVQLQEPVGTKPERKVTIGGFAKLD"
     misc_feature    491..>715
                     /gene="TRIM46"
                     /note="DNA repair protein rad18; Region: rad18; TIGR00599"
                     /db_xref="CDD:273165"
     misc_feature    506..>610
                     /gene="TRIM46"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 46 (TRIM46) and similar proteins;
                     Region: RING-HC_TRIM46_C-I; cd16757"
                     /db_xref="CDD:438415"
     misc_feature    932..1087
                     /gene="TRIM46"
                     /note="B-box-type 1 zinc finger found in tripartite
                     motif-containing protein 46 (TRIM46) and similar proteins;
                     Region: Bbox1_TRIM46_C-I; cd19849"
                     /db_xref="CDD:380907"
     misc_feature    1094..1231
                     /gene="TRIM46"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 46 (TRIM46) and similar proteins;
                     Region: Bbox2_TRIM46_C-I; cd19786"
                     /db_xref="CDD:380844"
     misc_feature    1235..1612
                     /gene="TRIM46"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; Region: CC_brat-like;
                     cl29238"
                     /db_xref="CDD:475168"
     misc_feature    1544..1693
                     /gene="TRIM46"
                     /note="TRIM C-terminal subgroup One Signature domain;
                     Region: COS; pfam18568"
                     /db_xref="CDD:465805"
     misc_feature    1757..2002
                     /gene="TRIM46"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1967..1972,1976..1981)
                     /gene="TRIM46"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2021..2650
                     /gene="TRIM46"
                     /note="PRY/SPRY domain in tripartite motif-containing
                     protein 46 (TRIM46); Region: SPRY_PRY_TRIM46; cd12895"
                     /db_xref="CDD:293952"
ORIGIN      
        1 ggactgggag ggtcgggatg caggtatgag agggtaatcc cgggggcagc cgggaggtga
       61 atgccgtgaa ggcgtccatc cgctggggtg tgaggaacat gtagctaccc ggacgcagcg
      121 ggtggcttgg ggtagcctcc agccgtgcac cggggctgga gctgcagggc aacggggcta
      181 tgctatgagg agggggcgtg agtgagcttg gatatattcc aagaaaactg aggacaggtg
      241 gggggcgagg aaagggccgc cccacggtgc agttcccaat ttgagcccct ccgcaagacc
      301 ccaccccact gcacccccac tcagggctgc ctctgagcct tcggttgtca tggcaacccg
      361 ggcccggctc tcccaggggc ggtgccagct ttgctccccc caaccacttc cttccccctc
      421 cctccgtgtc cctccctcct ttgtgtcagc tgcgcccctg accgggatgg ctgcgaagag
      481 agggaccaag acgagcatga agaacatgga gaaggaactg ctgtgcccag tgtgtcaaga
      541 gatgtacaag cagccactgg tgctgccctg tacccacaat gtatgccagg cctgtgcccg
      601 ggaggtgctg ggccagcagg gctacgtagg ccatggtggg gaccccagct ctgagcccac
      661 ctctcctgcc tccacccctt ctacccgaag tccccgcctc tcccgcagaa ctctccccaa
      721 gccagaccgc ttggaccgac tgcttaagtc aggctttggg acataccccg ggcggaagcg
      781 aggtgctctg caccctcagg tgatcatgtt tccgtgccca gcctgccagg gcgatgtgga
      841 gctgggggag cggggcttgg cagggctgtt ccggaacctg accctggagc gtgtggtgga
      901 gcggtaccgc cagagtgtga gtgtgggtgg cgccatcctg tgccagctgt gcaagccccc
      961 gccactagag gccaccaagg gctgcactga gtgccgcgcc accttctgca acgaatgctt
     1021 caagctcttc cacccctggg gcacccagaa ggcccaacat gagcccaccc tgcccaccct
     1081 ctccttccgc cccaagggcc tgatgtgccc agatcacaaa gaagaggtga cccactactg
     1141 caagacctgc caacgactgg tatgccaact ttgccgtgtg cgacgcaccc acagcggcca
     1201 caagatcaca cctgtgctca gtgcctacca ggccctcaag gacaagctga caaagagcct
     1261 gacatacatc ctgggaaacc aggacacagt acagacccag atctgtgagc tggaggagac
     1321 cgtgaggcac actgaggtga gtggtcagca ggccaaggag gaggtgtccc agctggtgcg
     1381 ggggctgggg gctgtgctgg aggagaggcg ggcatcgctg cttcaggcca ttgaggagtg
     1441 ccagcaggag cggctggccc gtctcagcgc ccagatccag gagcaccgga gcctgctgga
     1501 tggctcaggc ctggtgggct acgctcagga ggtgcttaag gaaacagacc agccttgctt
     1561 tgtgcaagca gccaaacagc tgcacaacag gattgcccga gctacggagg ccctccagat
     1621 gttccggcca gctgccagct cctccttccg ccattgccag ctggacgtgg ggcgtgagat
     1681 gaagctgctg acagagctta acttcctgcg agtgcccgag gctccggtca ttgacaccca
     1741 gcgcaccttt gcctacgacc agatcttcct gtgctggcgg ctgccccccc actcaccacc
     1801 tgcctggcac tacaccattg agttccggcg cacggatgtg ccggcccagc caggccccac
     1861 ccgctggcag cggcgggaag aggtgagagg caccagcgcc ctgcttgaga accctgacac
     1921 aggctctgtg tacgtgctgc gtgtccgtgg ctgcaacaag gccggctacg gcgagtacag
     1981 tgaagatgtg cacctgcaca cgcccccagc gcccgtcctg cacttcttcc tcgacggccg
     2041 ctggggcaca agccgagagc ggctggccat cagcaaggac cagcgagcgg tgcggagtgt
     2101 tccagggctg cccctgctgc tggctgctga gcggctactg acgggctgcc acctgagcgt
     2161 ggatgtggtc ctgggcgatg tggctgtgac ccagggccgc agctactggg cctgcgccgt
     2221 agacccagcc tcctacttgg tgaaggtggg cgtcgggctg gagagcaagc ttcaggaaag
     2281 cttccagggt gcccccgatg tgatcagccc caggtacgac ccggacagtg ggcatgacag
     2341 cggtgccgag gatgccacag tggaggcgtc gccacccttc gctttcctaa ccattggcat
     2401 gggcaagatc ctgctggggg ctggggccag ctcaaatgca gggctgacag ggagggatgg
     2461 cccagcggcc agctgcacag tgcccctgcc gccccgcctg ggcatctgcc tggactacga
     2521 gcggggtcgg gtttccttcc tggatgctgt gtccttccga gggctcctgg agtgccccct
     2581 ggactgctcg ggacctgtgt gccctgcctt ttgttttatt gggggtggtg cagtacagtt
     2641 acaggagccc gtgggcacta agcccgagag gaaggtcacc attgggggct ttgccaagct
     2701 ggactgaccc ttccaggcct ctcctgggcc ttggccttcc aagcctcctg aagctgggtt
     2761 attcctccca aagcttctcc ctcaaactct tcctgccatg tggtcctgtc ccttccccta
     2821 cgtctgtgtc ttcccagggc cttctcttga ccaagggact cttctctgct cgcctctctg
     2881 gatgtccccc attctctcca ctgcctgtta atccaggctc ccactcccat gtctctgccc
     2941 cgtgacctgc ccttggcatc ttacccgagt catggagaca gcccctttcc cgtccctgcc
     3001 ctgtgctcct ccccaggctg attgggaggg aaggcacctg gaacactggg catgctcccc
     3061 agctctgccc tctgccctgc caagctccct gactcatcca tgctgaacta cagctttggg
     3121 gcgtgcaggc tttttggctg gacactgccc aggcactccc tggtgagggg aaagggaccc
     3181 tatcatcctg ctttatttat ttgggtccct gtacccccag ccgcatgcct cttaactccc
     3241 tcttgcatgc tttacctgtc ctgcacccat gccaacgtgc caagtctccc ttggggagcc
     3301 agctgaggtt gagtgtcccc attgggttgg gcctggcaag gcctctggtg cccgctgttg
     3361 cctccccctg cggtgagcac tgctaggcct atgtcaagca acagctgtta ttttcatggt
     3421 ttataaacaa taaactgtga tgccaggc
//
LOCUS       XM_032653715            3131 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif containing 46 (TRIM46),
            transcript variant X2, mRNA.
ACCESSION   XM_032653715
VERSION     XM_032653715.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3131
                     /gene="TRIM46"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 long SRA reads, 13
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764768"
     CDS             111..2390
                     /gene="TRIM46"
                     /codon_start=1
                     /product="tripartite motif-containing protein 46 isoform
                     X2"
                     /protein_id="XP_032509606.1"
                     /db_xref="GeneID:116764768"
                     /translation="MAEGEDMQAFTSIMDALVRISTSMKNMEKELLCPVCQEMYKQPL
                     VLPCTHNVCQACAREVLGQQGYVGHGGDPSSEPTSPASTPSTRSPRLSRRTLPKPDRL
                     DRLLKSGFGTYPGRKRGALHPQVIMFPCPACQGDVELGERGLAGLFRNLTLERVVERY
                     RQSVSVGGAILCQLCKPPPLEATKGCTECRATFCNECFKLFHPWGTQKAQHEPTLPTL
                     SFRPKGLMCPDHKEEVTHYCKTCQRLVCQLCRVRRTHSGHKITPVLSAYQALKDKLTK
                     SLTYILGNQDTVQTQICELEETVRHTEVSGQQAKEEVSQLVRGLGAVLEERRASLLQA
                     IEECQQERLARLSAQIQEHRSLLDGSGLVGYAQEVLKETDQPCFVQAAKQLHNRIARA
                     TEALQMFRPAASSSFRHCQLDVGREMKLLTELNFLRVPEAPVIDTQRTFAYDQIFLCW
                     RLPPHSPPAWHYTIEFRRTDVPAQPGPTRWQRREEVRGTSALLENPDTGSVYVLRVRG
                     CNKAGYGEYSEDVHLHTPPAPVLHFFLDGRWGTSRERLAISKDQRAVRSVPGLPLLLA
                     AERLLTGCHLSVDVVLGDVAVTQGRSYWACAVDPASYLVKVGVGLESKLQESFQGAPD
                     VISPRYDPDSGHDSGAEDATVEASPPFAFLTIGMGKILLGAGASSNAGLTGRDGPAAS
                     CTVPLPPRLGICLDYERGRVSFLDAVSFRGLLECPLDCSGPVCPAFCFIGGGAVQLQE
                     PVGTKPERKVTIGGFAKLD"
     misc_feature    174..>398
                     /gene="TRIM46"
                     /note="DNA repair protein rad18; Region: rad18; TIGR00599"
                     /db_xref="CDD:273165"
     misc_feature    189..>293
                     /gene="TRIM46"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 46 (TRIM46) and similar proteins;
                     Region: RING-HC_TRIM46_C-I; cd16757"
                     /db_xref="CDD:438415"
     misc_feature    615..770
                     /gene="TRIM46"
                     /note="B-box-type 1 zinc finger found in tripartite
                     motif-containing protein 46 (TRIM46) and similar proteins;
                     Region: Bbox1_TRIM46_C-I; cd19849"
                     /db_xref="CDD:380907"
     misc_feature    777..914
                     /gene="TRIM46"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 46 (TRIM46) and similar proteins;
                     Region: Bbox2_TRIM46_C-I; cd19786"
                     /db_xref="CDD:380844"
     misc_feature    918..1295
                     /gene="TRIM46"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; Region: CC_brat-like;
                     cl29238"
                     /db_xref="CDD:475168"
     misc_feature    1227..1376
                     /gene="TRIM46"
                     /note="TRIM C-terminal subgroup One Signature domain;
                     Region: COS; pfam18568"
                     /db_xref="CDD:465805"
     misc_feature    1440..1685
                     /gene="TRIM46"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1650..1655,1659..1664)
                     /gene="TRIM46"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1704..2333
                     /gene="TRIM46"
                     /note="PRY/SPRY domain in tripartite motif-containing
                     protein 46 (TRIM46); Region: SPRY_PRY_TRIM46; cd12895"
                     /db_xref="CDD:293952"
ORIGIN      
        1 acatctcacc ccacccctcc ccacatcccc accgggctcc tgcattaagc tcggggttcg
       61 cagccgcagc cgggatcggg cacacggggg cgggcgggca tggtagggcc atggctgagg
      121 gtgaggatat gcaggccttc acttccatca tggatgcact ggtccgcatc agtacgagca
      181 tgaagaacat ggagaaggaa ctgctgtgcc cagtgtgtca agagatgtac aagcagccac
      241 tggtgctgcc ctgtacccac aatgtatgcc aggcctgtgc ccgggaggtg ctgggccagc
      301 agggctacgt aggccatggt ggggacccca gctctgagcc cacctctcct gcctccaccc
      361 cttctacccg aagtccccgc ctctcccgca gaactctccc caagccagac cgcttggacc
      421 gactgcttaa gtcaggcttt gggacatacc ccgggcggaa gcgaggtgct ctgcaccctc
      481 aggtgatcat gtttccgtgc ccagcctgcc agggcgatgt ggagctgggg gagcggggct
      541 tggcagggct gttccggaac ctgaccctgg agcgtgtggt ggagcggtac cgccagagtg
      601 tgagtgtggg tggcgccatc ctgtgccagc tgtgcaagcc cccgccacta gaggccacca
      661 agggctgcac tgagtgccgc gccaccttct gcaacgaatg cttcaagctc ttccacccct
      721 ggggcaccca gaaggcccaa catgagccca ccctgcccac cctctccttc cgccccaagg
      781 gcctgatgtg cccagatcac aaagaagagg tgacccacta ctgcaagacc tgccaacgac
      841 tggtatgcca actttgccgt gtgcgacgca cccacagcgg ccacaagatc acacctgtgc
      901 tcagtgccta ccaggccctc aaggacaagc tgacaaagag cctgacatac atcctgggaa
      961 accaggacac agtacagacc cagatctgtg agctggagga gaccgtgagg cacactgagg
     1021 tgagtggtca gcaggccaag gaggaggtgt cccagctggt gcgggggctg ggggctgtgc
     1081 tggaggagag gcgggcatcg ctgcttcagg ccattgagga gtgccagcag gagcggctgg
     1141 cccgtctcag cgcccagatc caggagcacc ggagcctgct ggatggctca ggcctggtgg
     1201 gctacgctca ggaggtgctt aaggaaacag accagccttg ctttgtgcaa gcagccaaac
     1261 agctgcacaa caggattgcc cgagctacgg aggccctcca gatgttccgg ccagctgcca
     1321 gctcctcctt ccgccattgc cagctggacg tggggcgtga gatgaagctg ctgacagagc
     1381 ttaacttcct gcgagtgccc gaggctccgg tcattgacac ccagcgcacc tttgcctacg
     1441 accagatctt cctgtgctgg cggctgcccc cccactcacc acctgcctgg cactacacca
     1501 ttgagttccg gcgcacggat gtgccggccc agccaggccc cacccgctgg cagcggcggg
     1561 aagaggtgag aggcaccagc gccctgcttg agaaccctga cacaggctct gtgtacgtgc
     1621 tgcgtgtccg tggctgcaac aaggccggct acggcgagta cagtgaagat gtgcacctgc
     1681 acacgccccc agcgcccgtc ctgcacttct tcctcgacgg ccgctggggc acaagccgag
     1741 agcggctggc catcagcaag gaccagcgag cggtgcggag tgttccaggg ctgcccctgc
     1801 tgctggctgc tgagcggcta ctgacgggct gccacctgag cgtggatgtg gtcctgggcg
     1861 atgtggctgt gacccagggc cgcagctact gggcctgcgc cgtagaccca gcctcctact
     1921 tggtgaaggt gggcgtcggg ctggagagca agcttcagga aagcttccag ggtgcccccg
     1981 atgtgatcag ccccaggtac gacccggaca gtgggcatga cagcggtgcc gaggatgcca
     2041 cagtggaggc gtcgccaccc ttcgctttcc taaccattgg catgggcaag atcctgctgg
     2101 gggctggggc cagctcaaat gcagggctga cagggaggga tggcccagcg gccagctgca
     2161 cagtgcccct gccgccccgc ctgggcatct gcctggacta cgagcggggt cgggtttcct
     2221 tcctggatgc tgtgtccttc cgagggctcc tggagtgccc cctggactgc tcgggacctg
     2281 tgtgccctgc cttttgtttt attgggggtg gtgcagtaca gttacaggag cccgtgggca
     2341 ctaagcccga gaggaaggtc accattgggg gctttgccaa gctggactga cccttccagg
     2401 cctctcctgg gccttggcct tccaagcctc ctgaagctgg gttattcctc ccaaagcttc
     2461 tccctcaaac tcttcctgcc atgtggtcct gtcccttccc ctacgtctgt gtcttcccag
     2521 ggccttctct tgaccaaggg actcttctct gctcgcctct ctggatgtcc cccattctct
     2581 ccactgcctg ttaatccagg ctcccactcc catgtctctg ccccgtgacc tgcccttggc
     2641 atcttacccg agtcatggag acagcccctt tcccgtccct gccctgtgct cctccccagg
     2701 ctgattggga gggaaggcac ctggaacact gggcatgctc cccagctctg ccctctgccc
     2761 tgccaagctc cctgactcat ccatgctgaa ctacagcttt ggggcgtgca ggctttttgg
     2821 ctggacactg cccaggcact ccctggtgag gggaaaggga ccctatcatc ctgctttatt
     2881 tatttgggtc cctgtacccc cagccgcatg cctcttaact ccctcttgca tgctttacct
     2941 gtcctgcacc catgccaacg tgccaagtct cccttgggga gccagctgag gttgagtgtc
     3001 cccattgggt tgggcctggc aaggcctctg gtgcccgctg ttgcctcccc ctgcggtgag
     3061 cactgctagg cctatgtcaa gcaacagctg ttattttcat ggtttataaa caataaactg
     3121 tgatgccagg c
//
LOCUS       XM_032653730             603 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus keratinocyte associated protein 2
            (KRTCAP2), mRNA.
ACCESSION   XM_032653730
VERSION     XM_032653730.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..603
                     /gene="KRTCAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116764769"
     CDS             149..562
                     /gene="KRTCAP2"
                     /codon_start=1
                     /product="keratinocyte-associated protein 2"
                     /protein_id="XP_032509621.1"
                     /db_xref="GeneID:116764769"
                     /translation="MMVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLL
                     GSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFS
                     MVGLYYINKISSTLYQATAPVLTPAKVTGKGKKRN"
     misc_feature    158..544
                     /gene="KRTCAP2"
                     /note="Keratinocyte-associated protein 2; Region:
                     Keratin_assoc; pfam09775"
                     /db_xref="CDD:401649"
ORIGIN      
        1 gcgctgcatt caggcgccaa gagggagaaa gaggaagacg tgggggagaa gcaagtccac
       61 gttgggggct gacgcatgcg cacagccaac cgtgcccggt tcggctctcc tcttgtacag
      121 aggcgcggat tggacccgag ggcagggcat gatggtggtg ggtacaggca cctcgctggc
      181 gctctcctcc ctcctgtccc tgctgctctt cgctgggatg cagatgtaca gccgccagct
      241 ggcctccacc gagtggctca ccatccaggg cggcctgctt ggttccggcc ttttcgtctt
      301 ctctctcact gccttcaata acctggagaa tcttgtcttt ggcaaaggat tccaagcaaa
      361 gatcttcccc gagattctcc tctgcctcct gttggctctc tttgcatctg gcctcatcca
      421 ccgagtctgt gtcaccacct gcttcatctt ctccatggtt ggtctgtact acatcaacaa
      481 gatctcttcc actctgtacc aggcaacagc tccagtcctc acaccagcca aggtgacggg
      541 caagggcaaa aagagaaact gaccctacat gtttaataaa gttgattctt tgtagctctg
      601 tga
//
LOCUS       XM_032653746            2174 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hemojuvelin BMP co-receptor (HJV), mRNA.
ACCESSION   XM_032653746
VERSION     XM_032653746.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2174
                     /gene="HJV"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 54%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764773"
     CDS             255..1538
                     /gene="HJV"
                     /codon_start=1
                     /product="hemojuvelin"
                     /protein_id="XP_032509637.1"
                     /db_xref="GeneID:116764773"
                     /translation="MGDPGQSPSPWCPHGSPPTLSILTLLLLLCGHAHSQCKILRCNA
                     EYVSSTLSLRGGGSPGALRGGGRGGGVGSSGLCRALRSYALCTRRTARTCRGDLAFHS
                     AVHGIEDLMIQHNCSRQGPTAPPPPRGPALPGAGPVRSSGPPAPDPCDYEGRFFRLNG
                     QPPGFLHCASFGDPHVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPVASGANATTT
                     RKLTIIFKNMQECIDQKVYQAEVDNLPAAFEDGSINGGDRPGGSSLSIRTANPGSHVE
                     IRAAYIGTTIIIRQTAGQLSFSIKAAEDVARAFSAEQDLQLCVGGCPPSQRLSRSERS
                     RRGAITIDTARQLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDL
                     EKLHLFPSDAGVPLSSATLLAPLLSGVFVLWLCIQ"
     misc_feature    363..932
                     /gene="HJV"
                     /note="Repulsive guidance molecule (RGM) N-terminus;
                     Region: RGM_N; pfam06535"
                     /db_xref="CDD:461940"
     misc_feature    945..1424
                     /gene="HJV"
                     /note="Repulsive guidance molecule (RGM) C-terminus;
                     Region: RGM_C; pfam06534"
                     /db_xref="CDD:461939"
ORIGIN      
        1 ctgacctcag tgagattgca gccggtctgg ggacctaggg gagacatgga gaaagagacg
       61 ggggatcccc tggctggagc tgactgacag tagacagtca tggctggaga attggatatc
      121 agactaatgc ttgacctctg gaaacaccaa atctcttttt tcagtccctt acaggacgtc
      181 cggtcaaaat tcactaggta ggagggtcac cagctggaaa gaaccggaac ctggggggac
      241 ctggctggat aggtatgggg gatccaggcc agtcccctag tccctggtgc ccccatggca
      301 gtcccccaac tctaagcatt ctcactctcc tgctgctcct ctgtggacat gctcattctc
      361 agtgcaagat cctccgctgc aatgctgagt atgtatcttc cactctgagc cttagaggtg
      421 ggggttcacc aggagccctt cgaggaggag gccggggtgg aggggtgggc tccagcggcc
      481 tctgccgagc cctccgctcc tacgcgctct gcactcggcg cacggcccgc acctgccgcg
      541 gggacctcgc cttccattct gctgtgcacg gcatcgaaga cctgatgatt cagcacaact
      601 gctcccgcca gggccccacg gcccctcccc caccccgggg cccagccctt ccaggcgcag
      661 gcccggtgcg ctcctctggt cccccagccc cggacccctg tgactatgaa ggccggtttt
      721 tccggctgaa cggtcagccc ccaggcttct tgcattgcgc ctccttcggg gaccctcacg
      781 tgcgcagctt ccatcaccac tttcacacgt gccgtgttca aggagcttgg cccttgctgg
      841 ataatgactt cctttttgtc caggccacca gctcccccgt ggcatcgggg gccaacgcca
      901 ccaccacccg gaagctcacc attatattta agaacatgca ggaatgcatt gatcagaagg
      961 tctaccaggc tgaggtggac aatcttcccg cagcctttga agatggttct atcaatggag
     1021 gtgaccgacc tgggggctca agtttatcca ttcgaactgc taaccctggg agccatgtgg
     1081 agatccgagc tgcctacatt ggcacaacta taatcattcg gcagacagct gggcagctct
     1141 ccttctccat caaagcagca gaggatgtgg ccagggcctt ctcagctgag caggacttgc
     1201 agctctgcgt tgggggatgc cctccaagtc agcgactctc acgctcagag cgcagtcgtc
     1261 ggggagctat aaccattgat actgccagac agctgtgcaa ggaagggctg ccagttgaag
     1321 acgcttactt ccattcctgt gtctttgatg ttttaatctc tggtgacccc aactttactg
     1381 tggcagcaca ggcagctctg gaggatgccc gagccttcct gccggacttg gaaaaacttc
     1441 acctcttccc ctcggatgct ggggttcctc tttcctcagc aaccctccta gccccactcc
     1501 tttctggggt ctttgttctg tggctttgca ttcaataact aggccagcaa tctcatgact
     1561 ggtttagaag tgatttgtgg atagagattg gcaaggaaga acgtaaagaa tcactgaagg
     1621 aaacagtggg gactaagaga cacgtgaaac aatgacattt atccagagtg agagaggctg
     1681 cagtccaggg ttgaaatgat cacagaggga ggattctggg caaggtttct gcattccaga
     1741 cctcaataag ggcttgtcac taattttccc agtcttgttt atagtaagca aattgttcca
     1801 gtccatctac tcctgagatc acccctacaa gcttagaggt tatggggtcc tgaccatcag
     1861 tagaaaactt aagggttcag acttttaata gagaagaact gaaagagaaa gaggtgatca
     1921 ttacccatca gaaactcaaa atctaatgat attttctctt ggaaggtgga aagaggagga
     1981 aatgataagg agaagagtct atttgataag aatatgtggg taagatgtgt tctgctttct
     2041 tggttcagag atgaagtggg ggttgtctgg atttttggtg aagggaatct ctgtctttgg
     2101 agaatagcac agataggaaa gaagctatca tccccacccc taactaatct gttattaaag
     2161 ttatgaattc ttca
//
LOCUS       XM_032653758            4255 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus forkhead associated phosphopeptide
            binding domain 1 (FHAD1), transcript variant X1, mRNA.
ACCESSION   XM_032653758
VERSION     XM_032653758.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4255
                     /gene="FHAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764777"
     CDS             140..4222
                     /gene="FHAD1"
                     /codon_start=1
                     /product="forkhead-associated domain-containing protein 1
                     isoform X1"
                     /protein_id="XP_032509649.1"
                     /db_xref="GeneID:116764777"
                     /translation="MRAYLKSAEGFFVLNKSTTIGRHEDSDLVLESTDIDNHHALIEY
                     NEAESSFVLQDFNSRNGTFVNECHIQNVAVKLLPGDILRFGSGGLTYELVIENPASVS
                     FPCVRGPAPWPRPQPPPATQQPNQSPSPPQTPFHPGIWPAPVQRSWSPGFPGPPMVPP
                     ASHKRPVSASGKMFSFVVDRAAHRVPIIKQVWTNAVELSERSVAEEIPGAGFSREIFV
                     DQDLAQHDKDEIILLLGKEVSRLSDFELESKYKDTVIASLHNEVANLSQKLLETAASR
                     QKERVIPPKFQVPHEEDDAQQREIQSLKDQISALQQGYSQVLCQTLSERNLEITSLKN
                     EAENLRREAAITSEMVSSLQRDVLVKDDQVQQLKQEVNQLKSENKEKDHQLQALSSKC
                     SVLKEELQKEDAQNEHWEAQEKELKLCKTQIHDMEKEMKTLREELKRSSTEQSLISKT
                     LREKSKVEEKLQEDSRRKLLQLQEMGTRENLIKANLERAVGQLELFRSQVIKATYGRV
                     KPFQDRPVSDEQLIEKITRVTEDNINFRQKKRTLQKETQLSSCEQEEMTENIVKLKTS
                     LDSCQACMKMSCCSNDLKKEVDLLQRLQVSPPVSGLQKVALDILRLSLSWLEETEHLL
                     HELGIQFSSSDKGLPLYLKYLLEHYQKITSWTQELQIKIKSSQETQQYLLQEKLRQHL
                     AEKEKLTEERLQQEEKLKARIKRLTEEKSALEETISQEKSRAKEALEEEQSKVQELEN
                     RLTRQKEISESSIAYEKHKAKEAIEKEKKKVQDLENRITKQKEEIDLKMQKEDILNDK
                     LNDALAMVEKTQKTKTAESLKAESLTTKLSETLAELETAKTKMIMMEERMQLQQLTVR
                     ALQEEQESQKHGFEKQIMEYKDQIKQHTQTIVSLEERLQKETEHRKKIGEIATLKDND
                     PAQEGETQQDTVAAPPVESSAKDAVCEHLIEDLLTAQKEILSQQEIMRLRKNLTEAHS
                     RMSDLRGELNERQKMELERNVALVQQQSSELSVLKEKMAQMSSLLEKKDKELEALKRA
                     LRASQEKHRLQLHKEKEQKPRNTTQMCDISVQIEPIHTDIFLSSQEEQSFGDLGAKCK
                     GSRHEEVIQRQKKALSELRARIKELEKASSSNHKDHMDGSFLDVKTLGMEKNVQKIWD
                     VKPDLPTFSRVEIRAPQNGLSSPGSIMATEKLGKTDVAEALDLSEKLYMDMSKTLGSL
                     MNIKDMSGHVSMKHLSPKEREKVNQLRQRDLDLVFDKITLLKNQLERKEELLRRYEKD
                     IEQLRQSKVSVQMYQSQVAKLEDDIYREAEEKALLKEALERVEQRLHQEKRVHRAIRR
                     QEVGARKDTPKMDQEREMLKREASSKSSQSLLFSKPGGRN"
     misc_feature    143..430
                     /gene="FHAD1"
                     /note="forkhead associated (FHA) domain found in
                     forkhead-associated domain-containing protein 1 (FHAD1)
                     and similar proteins; Region: FHA_FHAD1; cd22700"
                     /db_xref="CDD:438752"
     misc_feature    194..>811
                     /gene="FHAD1"
                     /note="Predicted component of the type VI protein
                     secretion system, contains a FHA domain [Signal
                     transduction mechanisms, Intracellular trafficking,
                     secretion, and vesicular transport]; Region: COG3456"
                     /db_xref="CDD:442679"
     misc_feature    order(200..205,245..250,254..256,311..313,317..322)
                     /gene="FHAD1"
                     /note="putative phosphopeptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438752"
     misc_feature    998..>3277
                     /gene="FHAD1"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3824..>4192
                     /gene="FHAD1"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 tgggccgcag gctggagact ccgcgggagt gcggccgggc ggcttcgccc agagcgggcc
       61 cggcgcctcc cgagcggtca gggctctcgg cggaggacga ggcgtgggct tcttcctctg
      121 gccaggggaa gcagagagca tgagagccta tctaaagagc gcagaaggct tttttgtcct
      181 gaataaaagc actacgattg gaaggcatga agattcagac cttgttttag agtctacaga
      241 catcgacaac catcacgcgc tcattgaata taatgaggcc gagagcagct ttgttctcca
      301 ggacttcaat tcccgcaacg gcacattcgt caacgagtgc cacattcaga acgtggctgt
      361 gaagctctta cccggagaca tcctgaggtt tgggtccgga gggctgacct atgaactggt
      421 catcgaaaac ccagcctcgg tctccttccc atgcgtgagg ggcccagcac cttggccaag
      481 gccacagcca cctccggcca cccagcaacc gaaccagtca ccctcaccac cacagacccc
      541 cttccacccg ggcatctggc cagcgccagt gcagaggagc tggtccccgg gattccccgg
      601 gccccccatg gtcccacctg cctcccacaa gcggcccgtg agtgccagcg ggaagatgtt
      661 ctccttcgtg gtggacagag ccgcccacag ggttcccatc atcaagcaag tgtggaccaa
      721 cgccgtggaa ctgtcggaac gatcagtggc cgaggaaatt cctggggcag ggttctccag
      781 agaaattttt gtggaccagg acctggccca gcacgataag gatgaaataa ttctgctgct
      841 gggaaaagaa gtcagccgtc tctcggattt tgaacttgaa tccaaataca aagacaccgt
      901 gatagcaagc ctgcacaacg aagtggccaa cctgagccag aagctgttgg aaacagccgc
      961 ctccaggcag aaggagaggg tgatcccgcc caagtttcag gttccgcatg aagaggacga
     1021 tgcccaacag agagagatcc agagcttgaa agaccagatc agtgccctac agcaaggcta
     1081 cagccaggtg ctgtgccaga ccctgtctga gagaaactta gaaatcacat ccctgaagaa
     1141 cgaggccgag aacttaagga gggaagccgc catcacatca gagatggtgt catctttgca
     1201 aagagatgtg ttagtaaagg atgatcaagt tcaacaacta aaacaggagg tgaatcaact
     1261 aaagagtgag aacaaagaaa aggatcacca gctccaagcc ctcagctcca aatgctcagt
     1321 gctgaaagaa gagttacaga aggaagatgc ccagaatgag cactgggaag cccaggagaa
     1381 agagttaaaa ctctgcaaaa cccaaatcca tgacatggag aaagaaatga agacgctcag
     1441 ggaggagctg aaaaggagca gtaccgagca gagcttgatc tctaagacgc tacgggaaaa
     1501 gagcaaggtt gaagagaagc ttcaggagga ttccagaagg aaattgcttc agctgcaaga
     1561 aatggggacc agagaaaacc tcattaaagc caatttggaa agggcagtag gtcagctgga
     1621 gcttttcaga agtcaggtca tcaaggccac ctatggacgc gtgaaaccgt tccaggacag
     1681 acccgtctcc gatgagcagt taatagagaa gatcaccagg gtcacagagg acaatatcaa
     1741 ctttcggcag aaaaagcgga ccctgcagaa ggagacccag ctcagcagct gcgaacagga
     1801 ggaaatgaca gagaacatcg tgaagctgaa gacatcctta gacagttgcc aggcgtgcat
     1861 gaaaatgtct tgctgtagca atgacctgaa gaaggaggtc gacctcctgc agcgcctgca
     1921 ggtgagccca cctgtctcag ggctccagaa ggtggcgctg gacatcttgc gcctgtcact
     1981 gtcctggctg gaggaaacgg agcatctcct ccacgagctg gggatccagt tctccagctc
     2041 cgacaaagga ttgcctttgt atctgaaata ccttctggaa cattatcaaa agattacaag
     2101 ctggacccag gaacttcaga tcaagatcaa aagttctcag gaaactcagc agtatttgct
     2161 gcaagaaaag ttacggcagc atctggcaga gaaggagaag ctgaccgagg aaaggctaca
     2221 gcaagaggag aagctgaaag ccagaatcaa gcggctaacg gaagagaaat cggctttgga
     2281 ggaaaccatt tctcaggaga aaagcagagc aaaggaagca ttagaagaag aacagagcaa
     2341 agtccaagag ctggagaatc gcttaacccg ccagaaggag atttcagaga gcagcatcgc
     2401 ctacgagaaa cacaaagcga aggaggccat agagaaggaa aagaaaaagg tacaagatct
     2461 ggagaaccgc ataaccaagc agaaggagga aatagattta aaaatgcaaa aagaagacat
     2521 tttaaatgat aaattaaatg atgcattggc catggtagaa aagactcaga aaacaaagac
     2581 ggctgaaagt ctaaaagcag agagcctcac cacgaaatta agtgaaacat tagctgaact
     2641 ggaaactgct aagacgaaaa tgatcatgat ggaggagcgg atgcagctgc aacagctcac
     2701 agtaagggcc ctccaagaag aacaggaatc tcagaagcac ggatttgaaa aacagatcat
     2761 ggaatacaag gaccaaatca aacagcacac ccagacgatt gtgagtcttg aagaaagact
     2821 ccagaaagag accgaacacc gtaaaaaaat aggagagatt gcaacgttga aggacaatga
     2881 cccagcccag gagggggaaa cacagcaaga cactgtggca gcacctccgg tggagagctc
     2941 cgccaaagac gcagtgtgtg aacacctgat agaggactta ttgactgctc agaaggaaat
     3001 cctgtctcag caggagatca tgaggttaag gaagaacctc actgaagccc atagccgaat
     3061 gtcagatttg agaggggagc ttaacgagag gcagaagatg gagctggagc ggaatgtggc
     3121 gctggtccag caacaaagca gtgagctgag tgtgctcaag gaaaagatgg cacagatgag
     3181 cagcctgctg gagaagaagg acaaggagct agaggccctc aagcgggcac tcagggcctc
     3241 ccaagagaaa cacagactcc agctgcacaa ggagaaggaa cagaagccca ggaacacaac
     3301 ccagatgtgt gacatctcgg tgcagataga accaatccac accgatattt tcttgagcag
     3361 ccaggaagag cagtccttcg gtgatctagg ggccaagtgc aaagggtccc gacatgagga
     3421 agtcattcag cgtcagaaaa aggccttatc cgagcttcgt gcgcgaatta aagaacttga
     3481 gaaggccagc tcgtcaaatc ataaagacca catggatgga tcatttctag acgtaaagac
     3541 cctcgggatg gaaaaaaatg ttcagaaaat atgggatgta aaacctgact tgccaacttt
     3601 ttcaagagta gagatccgag cgcctcaaaa tggcctttcc agcccagggt ccatcatggc
     3661 cactgagaag ttagggaaaa cggatgtggc tgaggcttta gatcttagtg aaaagctgta
     3721 catggatatg agcaaaaccc tcgggagtct gatgaatatc aaagatatgt caggtcacgt
     3781 gtccatgaaa cacctctccc caaaagagag ggagaaggtc aaccagcttc gacaaagaga
     3841 cctcgacctg gtgtttgata agatcaccct actcaagaac cagctggaga gaaaagaaga
     3901 gcttttgagg cgatacgaga aagacattga acagctcagg cagagcaaag tgtcggttca
     3961 gatgtaccag tcacaggtgg ccaagctgga agacgacatc tacagagagg ccgaagaaaa
     4021 ggcgctgctg aaggaggccc tggagcgcgt ggaacagcgg ctgcaccagg agaagagggt
     4081 ccacagggcg atcaggcggc aggaggttgg agccagaaaa gacaccccaa agatggacca
     4141 agaacgggag atgctgaaga gagaagcgtc cagcaaatcc agccagagcc ttctgttttc
     4201 taaacctggt ggaaggaact agaaacgccg tcccgctggg cctcgcgtga tcctc
//
LOCUS       XM_032653769            4323 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus forkhead associated phosphopeptide
            binding domain 1 (FHAD1), transcript variant X2, mRNA.
ACCESSION   XM_032653769
VERSION     XM_032653769.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4323
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4323
                     /gene="FHAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764777"
     CDS             208..4290
                     /gene="FHAD1"
                     /codon_start=1
                     /product="forkhead-associated domain-containing protein 1
                     isoform X1"
                     /protein_id="XP_032509660.1"
                     /db_xref="GeneID:116764777"
                     /translation="MRAYLKSAEGFFVLNKSTTIGRHEDSDLVLESTDIDNHHALIEY
                     NEAESSFVLQDFNSRNGTFVNECHIQNVAVKLLPGDILRFGSGGLTYELVIENPASVS
                     FPCVRGPAPWPRPQPPPATQQPNQSPSPPQTPFHPGIWPAPVQRSWSPGFPGPPMVPP
                     ASHKRPVSASGKMFSFVVDRAAHRVPIIKQVWTNAVELSERSVAEEIPGAGFSREIFV
                     DQDLAQHDKDEIILLLGKEVSRLSDFELESKYKDTVIASLHNEVANLSQKLLETAASR
                     QKERVIPPKFQVPHEEDDAQQREIQSLKDQISALQQGYSQVLCQTLSERNLEITSLKN
                     EAENLRREAAITSEMVSSLQRDVLVKDDQVQQLKQEVNQLKSENKEKDHQLQALSSKC
                     SVLKEELQKEDAQNEHWEAQEKELKLCKTQIHDMEKEMKTLREELKRSSTEQSLISKT
                     LREKSKVEEKLQEDSRRKLLQLQEMGTRENLIKANLERAVGQLELFRSQVIKATYGRV
                     KPFQDRPVSDEQLIEKITRVTEDNINFRQKKRTLQKETQLSSCEQEEMTENIVKLKTS
                     LDSCQACMKMSCCSNDLKKEVDLLQRLQVSPPVSGLQKVALDILRLSLSWLEETEHLL
                     HELGIQFSSSDKGLPLYLKYLLEHYQKITSWTQELQIKIKSSQETQQYLLQEKLRQHL
                     AEKEKLTEERLQQEEKLKARIKRLTEEKSALEETISQEKSRAKEALEEEQSKVQELEN
                     RLTRQKEISESSIAYEKHKAKEAIEKEKKKVQDLENRITKQKEEIDLKMQKEDILNDK
                     LNDALAMVEKTQKTKTAESLKAESLTTKLSETLAELETAKTKMIMMEERMQLQQLTVR
                     ALQEEQESQKHGFEKQIMEYKDQIKQHTQTIVSLEERLQKETEHRKKIGEIATLKDND
                     PAQEGETQQDTVAAPPVESSAKDAVCEHLIEDLLTAQKEILSQQEIMRLRKNLTEAHS
                     RMSDLRGELNERQKMELERNVALVQQQSSELSVLKEKMAQMSSLLEKKDKELEALKRA
                     LRASQEKHRLQLHKEKEQKPRNTTQMCDISVQIEPIHTDIFLSSQEEQSFGDLGAKCK
                     GSRHEEVIQRQKKALSELRARIKELEKASSSNHKDHMDGSFLDVKTLGMEKNVQKIWD
                     VKPDLPTFSRVEIRAPQNGLSSPGSIMATEKLGKTDVAEALDLSEKLYMDMSKTLGSL
                     MNIKDMSGHVSMKHLSPKEREKVNQLRQRDLDLVFDKITLLKNQLERKEELLRRYEKD
                     IEQLRQSKVSVQMYQSQVAKLEDDIYREAEEKALLKEALERVEQRLHQEKRVHRAIRR
                     QEVGARKDTPKMDQEREMLKREASSKSSQSLLFSKPGGRN"
     misc_feature    211..498
                     /gene="FHAD1"
                     /note="forkhead associated (FHA) domain found in
                     forkhead-associated domain-containing protein 1 (FHAD1)
                     and similar proteins; Region: FHA_FHAD1; cd22700"
                     /db_xref="CDD:438752"
     misc_feature    262..>879
                     /gene="FHAD1"
                     /note="Predicted component of the type VI protein
                     secretion system, contains a FHA domain [Signal
                     transduction mechanisms, Intracellular trafficking,
                     secretion, and vesicular transport]; Region: COG3456"
                     /db_xref="CDD:442679"
     misc_feature    order(268..273,313..318,322..324,379..381,385..390)
                     /gene="FHAD1"
                     /note="putative phosphopeptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438752"
     misc_feature    1066..>3345
                     /gene="FHAD1"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3892..>4260
                     /gene="FHAD1"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 ctggagactc cgcgggagtg cggccgggcg gcttcgccca gagcgggccc ggcgcctccc
       61 gagcggtcag ggctctcggc ggaggacgag gcgtgggctt cttcctctgg ccaggtgaga
      121 gcggcgcgcg aggaggcggc gggcggaaac ctgggccgga ggagtccagc cctgcgaggt
      181 caagggcgtt gcggggaagc agagagcatg agagcctatc taaagagcgc agaaggcttt
      241 tttgtcctga ataaaagcac tacgattgga aggcatgaag attcagacct tgttttagag
      301 tctacagaca tcgacaacca tcacgcgctc attgaatata atgaggccga gagcagcttt
      361 gttctccagg acttcaattc ccgcaacggc acattcgtca acgagtgcca cattcagaac
      421 gtggctgtga agctcttacc cggagacatc ctgaggtttg ggtccggagg gctgacctat
      481 gaactggtca tcgaaaaccc agcctcggtc tccttcccat gcgtgagggg cccagcacct
      541 tggccaaggc cacagccacc tccggccacc cagcaaccga accagtcacc ctcaccacca
      601 cagaccccct tccacccggg catctggcca gcgccagtgc agaggagctg gtccccggga
      661 ttccccgggc cccccatggt cccacctgcc tcccacaagc ggcccgtgag tgccagcggg
      721 aagatgttct ccttcgtggt ggacagagcc gcccacaggg ttcccatcat caagcaagtg
      781 tggaccaacg ccgtggaact gtcggaacga tcagtggccg aggaaattcc tggggcaggg
      841 ttctccagag aaatttttgt ggaccaggac ctggcccagc acgataagga tgaaataatt
      901 ctgctgctgg gaaaagaagt cagccgtctc tcggattttg aacttgaatc caaatacaaa
      961 gacaccgtga tagcaagcct gcacaacgaa gtggccaacc tgagccagaa gctgttggaa
     1021 acagccgcct ccaggcagaa ggagagggtg atcccgccca agtttcaggt tccgcatgaa
     1081 gaggacgatg cccaacagag agagatccag agcttgaaag accagatcag tgccctacag
     1141 caaggctaca gccaggtgct gtgccagacc ctgtctgaga gaaacttaga aatcacatcc
     1201 ctgaagaacg aggccgagaa cttaaggagg gaagccgcca tcacatcaga gatggtgtca
     1261 tctttgcaaa gagatgtgtt agtaaaggat gatcaagttc aacaactaaa acaggaggtg
     1321 aatcaactaa agagtgagaa caaagaaaag gatcaccagc tccaagccct cagctccaaa
     1381 tgctcagtgc tgaaagaaga gttacagaag gaagatgccc agaatgagca ctgggaagcc
     1441 caggagaaag agttaaaact ctgcaaaacc caaatccatg acatggagaa agaaatgaag
     1501 acgctcaggg aggagctgaa aaggagcagt accgagcaga gcttgatctc taagacgcta
     1561 cgggaaaaga gcaaggttga agagaagctt caggaggatt ccagaaggaa attgcttcag
     1621 ctgcaagaaa tggggaccag agaaaacctc attaaagcca atttggaaag ggcagtaggt
     1681 cagctggagc ttttcagaag tcaggtcatc aaggccacct atggacgcgt gaaaccgttc
     1741 caggacagac ccgtctccga tgagcagtta atagagaaga tcaccagggt cacagaggac
     1801 aatatcaact ttcggcagaa aaagcggacc ctgcagaagg agacccagct cagcagctgc
     1861 gaacaggagg aaatgacaga gaacatcgtg aagctgaaga catccttaga cagttgccag
     1921 gcgtgcatga aaatgtcttg ctgtagcaat gacctgaaga aggaggtcga cctcctgcag
     1981 cgcctgcagg tgagcccacc tgtctcaggg ctccagaagg tggcgctgga catcttgcgc
     2041 ctgtcactgt cctggctgga ggaaacggag catctcctcc acgagctggg gatccagttc
     2101 tccagctccg acaaaggatt gcctttgtat ctgaaatacc ttctggaaca ttatcaaaag
     2161 attacaagct ggacccagga acttcagatc aagatcaaaa gttctcagga aactcagcag
     2221 tatttgctgc aagaaaagtt acggcagcat ctggcagaga aggagaagct gaccgaggaa
     2281 aggctacagc aagaggagaa gctgaaagcc agaatcaagc ggctaacgga agagaaatcg
     2341 gctttggagg aaaccatttc tcaggagaaa agcagagcaa aggaagcatt agaagaagaa
     2401 cagagcaaag tccaagagct ggagaatcgc ttaacccgcc agaaggagat ttcagagagc
     2461 agcatcgcct acgagaaaca caaagcgaag gaggccatag agaaggaaaa gaaaaaggta
     2521 caagatctgg agaaccgcat aaccaagcag aaggaggaaa tagatttaaa aatgcaaaaa
     2581 gaagacattt taaatgataa attaaatgat gcattggcca tggtagaaaa gactcagaaa
     2641 acaaagacgg ctgaaagtct aaaagcagag agcctcacca cgaaattaag tgaaacatta
     2701 gctgaactgg aaactgctaa gacgaaaatg atcatgatgg aggagcggat gcagctgcaa
     2761 cagctcacag taagggccct ccaagaagaa caggaatctc agaagcacgg atttgaaaaa
     2821 cagatcatgg aatacaagga ccaaatcaaa cagcacaccc agacgattgt gagtcttgaa
     2881 gaaagactcc agaaagagac cgaacaccgt aaaaaaatag gagagattgc aacgttgaag
     2941 gacaatgacc cagcccagga gggggaaaca cagcaagaca ctgtggcagc acctccggtg
     3001 gagagctccg ccaaagacgc agtgtgtgaa cacctgatag aggacttatt gactgctcag
     3061 aaggaaatcc tgtctcagca ggagatcatg aggttaagga agaacctcac tgaagcccat
     3121 agccgaatgt cagatttgag aggggagctt aacgagaggc agaagatgga gctggagcgg
     3181 aatgtggcgc tggtccagca acaaagcagt gagctgagtg tgctcaagga aaagatggca
     3241 cagatgagca gcctgctgga gaagaaggac aaggagctag aggccctcaa gcgggcactc
     3301 agggcctccc aagagaaaca cagactccag ctgcacaagg agaaggaaca gaagcccagg
     3361 aacacaaccc agatgtgtga catctcggtg cagatagaac caatccacac cgatattttc
     3421 ttgagcagcc aggaagagca gtccttcggt gatctagggg ccaagtgcaa agggtcccga
     3481 catgaggaag tcattcagcg tcagaaaaag gccttatccg agcttcgtgc gcgaattaaa
     3541 gaacttgaga aggccagctc gtcaaatcat aaagaccaca tggatggatc atttctagac
     3601 gtaaagaccc tcgggatgga aaaaaatgtt cagaaaatat gggatgtaaa acctgacttg
     3661 ccaacttttt caagagtaga gatccgagcg cctcaaaatg gcctttccag cccagggtcc
     3721 atcatggcca ctgagaagtt agggaaaacg gatgtggctg aggctttaga tcttagtgaa
     3781 aagctgtaca tggatatgag caaaaccctc gggagtctga tgaatatcaa agatatgtca
     3841 ggtcacgtgt ccatgaaaca cctctcccca aaagagaggg agaaggtcaa ccagcttcga
     3901 caaagagacc tcgacctggt gtttgataag atcaccctac tcaagaacca gctggagaga
     3961 aaagaagagc ttttgaggcg atacgagaaa gacattgaac agctcaggca gagcaaagtg
     4021 tcggttcaga tgtaccagtc acaggtggcc aagctggaag acgacatcta cagagaggcc
     4081 gaagaaaagg cgctgctgaa ggaggccctg gagcgcgtgg aacagcggct gcaccaggag
     4141 aagagggtcc acagggcgat caggcggcag gaggttggag ccagaaaaga caccccaaag
     4201 atggaccaag aacgggagat gctgaagaga gaagcgtcca gcaaatccag ccagagcctt
     4261 ctgttttcta aacctggtgg aaggaactag aaacgccgtc ccgctgggcc tcgcgtgatc
     4321 ctc
//
LOCUS       XM_032653773            4147 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus forkhead associated phosphopeptide
            binding domain 1 (FHAD1), transcript variant X3, mRNA.
ACCESSION   XM_032653773
VERSION     XM_032653773.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4147
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4147
                     /gene="FHAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764777"
     CDS             140..4114
                     /gene="FHAD1"
                     /codon_start=1
                     /product="forkhead-associated domain-containing protein 1
                     isoform X2"
                     /protein_id="XP_032509664.1"
                     /db_xref="GeneID:116764777"
                     /translation="MRAYLKSAEGFFVLNKSTTIGRHEDSDLVLESTDIDNHHALIEY
                     NEAESSFVLQDFNSRNGTFVNECHIQNVAVKLLPGDILRFGSGGLTYELVIENPASVS
                     FPCVRGPAPWPRPQPPPATQQPNQSPSPPQTPFHPGIWPAPVQRSWSPGFPGPPMVPP
                     ASHKRPVSASGKMFSFVVDRAAHRVPIIKQVWTNAVELSERSVAEEIPGAGFSREIFV
                     DQDLAQHDKDEIILLLGKEVSRLSDFELESKYKDTVIASLHNEVANLSQKLLETAASR
                     QKERVIPPKFQVPHEEDDAQQREIQSLKDQISALQQGYSQVLCQTLSERNLEITSLKN
                     EAENLRREAAITSEMVSSLQRDVLVKDDQVQQLKQEVNQLKSENKEKDHQLQALSSKC
                     SVLKEELQKEDAQNEHWEAQEKELKLCKTQIHDMEKEMKTLREELKRSSTEQSLISKT
                     LREKSKLELFRSQVIKATYGRVKPFQDRPVSDEQLIEKITRVTEDNINFRQKKRTLQK
                     ETQLSSCEQEEMTENIVKLKTSLDSCQACMKMSCCSNDLKKEVDLLQRLQVSPPVSGL
                     QKVALDILRLSLSWLEETEHLLHELGIQFSSSDKGLPLYLKYLLEHYQKITSWTQELQ
                     IKIKSSQETQQYLLQEKLRQHLAEKEKLTEERLQQEEKLKARIKRLTEEKSALEETIS
                     QEKSRAKEALEEEQSKVQELENRLTRQKEISESSIAYEKHKAKEAIEKEKKKVQDLEN
                     RITKQKEEIDLKMQKEDILNDKLNDALAMVEKTQKTKTAESLKAESLTTKLSETLAEL
                     ETAKTKMIMMEERMQLQQLTVRALQEEQESQKHGFEKQIMEYKDQIKQHTQTIVSLEE
                     RLQKETEHRKKIGEIATLKDNDPAQEGETQQDTVAAPPVESSAKDAVCEHLIEDLLTA
                     QKEILSQQEIMRLRKNLTEAHSRMSDLRGELNERQKMELERNVALVQQQSSELSVLKE
                     KMAQMSSLLEKKDKELEALKRALRASQEKHRLQLHKEKEQKPRNTTQMCDISVQIEPI
                     HTDIFLSSQEEQSFGDLGAKCKGSRHEEVIQRQKKALSELRARIKELEKASSSNHKDH
                     MDGSFLDVKTLGMEKNVQKIWDVKPDLPTFSRVEIRAPQNGLSSPGSIMATEKLGKTD
                     VAEALDLSEKLYMDMSKTLGSLMNIKDMSGHVSMKHLSPKEREKVNQLRQRDLDLVFD
                     KITLLKNQLERKEELLRRYEKDIEQLRQSKVSVQMYQSQVAKLEDDIYREAEEKALLK
                     EALERVEQRLHQEKRVHRAIRRQEVGARKDTPKMDQEREMLKREASSKSSQSLLFSKP
                     GGRN"
     misc_feature    143..430
                     /gene="FHAD1"
                     /note="forkhead associated (FHA) domain found in
                     forkhead-associated domain-containing protein 1 (FHAD1)
                     and similar proteins; Region: FHA_FHAD1; cd22700"
                     /db_xref="CDD:438752"
     misc_feature    194..>811
                     /gene="FHAD1"
                     /note="Predicted component of the type VI protein
                     secretion system, contains a FHA domain [Signal
                     transduction mechanisms, Intracellular trafficking,
                     secretion, and vesicular transport]; Region: COG3456"
                     /db_xref="CDD:442679"
     misc_feature    order(200..205,245..250,254..256,311..313,317..322)
                     /gene="FHAD1"
                     /note="putative phosphopeptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438752"
     misc_feature    872..>3157
                     /gene="FHAD1"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3716..>4084
                     /gene="FHAD1"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 tgggccgcag gctggagact ccgcgggagt gcggccgggc ggcttcgccc agagcgggcc
       61 cggcgcctcc cgagcggtca gggctctcgg cggaggacga ggcgtgggct tcttcctctg
      121 gccaggggaa gcagagagca tgagagccta tctaaagagc gcagaaggct tttttgtcct
      181 gaataaaagc actacgattg gaaggcatga agattcagac cttgttttag agtctacaga
      241 catcgacaac catcacgcgc tcattgaata taatgaggcc gagagcagct ttgttctcca
      301 ggacttcaat tcccgcaacg gcacattcgt caacgagtgc cacattcaga acgtggctgt
      361 gaagctctta cccggagaca tcctgaggtt tgggtccgga gggctgacct atgaactggt
      421 catcgaaaac ccagcctcgg tctccttccc atgcgtgagg ggcccagcac cttggccaag
      481 gccacagcca cctccggcca cccagcaacc gaaccagtca ccctcaccac cacagacccc
      541 cttccacccg ggcatctggc cagcgccagt gcagaggagc tggtccccgg gattccccgg
      601 gccccccatg gtcccacctg cctcccacaa gcggcccgtg agtgccagcg ggaagatgtt
      661 ctccttcgtg gtggacagag ccgcccacag ggttcccatc atcaagcaag tgtggaccaa
      721 cgccgtggaa ctgtcggaac gatcagtggc cgaggaaatt cctggggcag ggttctccag
      781 agaaattttt gtggaccagg acctggccca gcacgataag gatgaaataa ttctgctgct
      841 gggaaaagaa gtcagccgtc tctcggattt tgaacttgaa tccaaataca aagacaccgt
      901 gatagcaagc ctgcacaacg aagtggccaa cctgagccag aagctgttgg aaacagccgc
      961 ctccaggcag aaggagaggg tgatcccgcc caagtttcag gttccgcatg aagaggacga
     1021 tgcccaacag agagagatcc agagcttgaa agaccagatc agtgccctac agcaaggcta
     1081 cagccaggtg ctgtgccaga ccctgtctga gagaaactta gaaatcacat ccctgaagaa
     1141 cgaggccgag aacttaagga gggaagccgc catcacatca gagatggtgt catctttgca
     1201 aagagatgtg ttagtaaagg atgatcaagt tcaacaacta aaacaggagg tgaatcaact
     1261 aaagagtgag aacaaagaaa aggatcacca gctccaagcc ctcagctcca aatgctcagt
     1321 gctgaaagaa gagttacaga aggaagatgc ccagaatgag cactgggaag cccaggagaa
     1381 agagttaaaa ctctgcaaaa cccaaatcca tgacatggag aaagaaatga agacgctcag
     1441 ggaggagctg aaaaggagca gtaccgagca gagcttgatc tctaagacgc tacgggaaaa
     1501 gagcaagctg gagcttttca gaagtcaggt catcaaggcc acctatggac gcgtgaaacc
     1561 gttccaggac agacccgtct ccgatgagca gttaatagag aagatcacca gggtcacaga
     1621 ggacaatatc aactttcggc agaaaaagcg gaccctgcag aaggagaccc agctcagcag
     1681 ctgcgaacag gaggaaatga cagagaacat cgtgaagctg aagacatcct tagacagttg
     1741 ccaggcgtgc atgaaaatgt cttgctgtag caatgacctg aagaaggagg tcgacctcct
     1801 gcagcgcctg caggtgagcc cacctgtctc agggctccag aaggtggcgc tggacatctt
     1861 gcgcctgtca ctgtcctggc tggaggaaac ggagcatctc ctccacgagc tggggatcca
     1921 gttctccagc tccgacaaag gattgccttt gtatctgaaa taccttctgg aacattatca
     1981 aaagattaca agctggaccc aggaacttca gatcaagatc aaaagttctc aggaaactca
     2041 gcagtatttg ctgcaagaaa agttacggca gcatctggca gagaaggaga agctgaccga
     2101 ggaaaggcta cagcaagagg agaagctgaa agccagaatc aagcggctaa cggaagagaa
     2161 atcggctttg gaggaaacca tttctcagga gaaaagcaga gcaaaggaag cattagaaga
     2221 agaacagagc aaagtccaag agctggagaa tcgcttaacc cgccagaagg agatttcaga
     2281 gagcagcatc gcctacgaga aacacaaagc gaaggaggcc atagagaagg aaaagaaaaa
     2341 ggtacaagat ctggagaacc gcataaccaa gcagaaggag gaaatagatt taaaaatgca
     2401 aaaagaagac attttaaatg ataaattaaa tgatgcattg gccatggtag aaaagactca
     2461 gaaaacaaag acggctgaaa gtctaaaagc agagagcctc accacgaaat taagtgaaac
     2521 attagctgaa ctggaaactg ctaagacgaa aatgatcatg atggaggagc ggatgcagct
     2581 gcaacagctc acagtaaggg ccctccaaga agaacaggaa tctcagaagc acggatttga
     2641 aaaacagatc atggaataca aggaccaaat caaacagcac acccagacga ttgtgagtct
     2701 tgaagaaaga ctccagaaag agaccgaaca ccgtaaaaaa ataggagaga ttgcaacgtt
     2761 gaaggacaat gacccagccc aggaggggga aacacagcaa gacactgtgg cagcacctcc
     2821 ggtggagagc tccgccaaag acgcagtgtg tgaacacctg atagaggact tattgactgc
     2881 tcagaaggaa atcctgtctc agcaggagat catgaggtta aggaagaacc tcactgaagc
     2941 ccatagccga atgtcagatt tgagagggga gcttaacgag aggcagaaga tggagctgga
     3001 gcggaatgtg gcgctggtcc agcaacaaag cagtgagctg agtgtgctca aggaaaagat
     3061 ggcacagatg agcagcctgc tggagaagaa ggacaaggag ctagaggccc tcaagcgggc
     3121 actcagggcc tcccaagaga aacacagact ccagctgcac aaggagaagg aacagaagcc
     3181 caggaacaca acccagatgt gtgacatctc ggtgcagata gaaccaatcc acaccgatat
     3241 tttcttgagc agccaggaag agcagtcctt cggtgatcta ggggccaagt gcaaagggtc
     3301 ccgacatgag gaagtcattc agcgtcagaa aaaggcctta tccgagcttc gtgcgcgaat
     3361 taaagaactt gagaaggcca gctcgtcaaa tcataaagac cacatggatg gatcatttct
     3421 agacgtaaag accctcggga tggaaaaaaa tgttcagaaa atatgggatg taaaacctga
     3481 cttgccaact ttttcaagag tagagatccg agcgcctcaa aatggccttt ccagcccagg
     3541 gtccatcatg gccactgaga agttagggaa aacggatgtg gctgaggctt tagatcttag
     3601 tgaaaagctg tacatggata tgagcaaaac cctcgggagt ctgatgaata tcaaagatat
     3661 gtcaggtcac gtgtccatga aacacctctc cccaaaagag agggagaagg tcaaccagct
     3721 tcgacaaaga gacctcgacc tggtgtttga taagatcacc ctactcaaga accagctgga
     3781 gagaaaagaa gagcttttga ggcgatacga gaaagacatt gaacagctca ggcagagcaa
     3841 agtgtcggtt cagatgtacc agtcacaggt ggccaagctg gaagacgaca tctacagaga
     3901 ggccgaagaa aaggcgctgc tgaaggaggc cctggagcgc gtggaacagc ggctgcacca
     3961 ggagaagagg gtccacaggg cgatcaggcg gcaggaggtt ggagccagaa aagacacccc
     4021 aaagatggac caagaacggg agatgctgaa gagagaagcg tccagcaaat ccagccagag
     4081 ccttctgttt tctaaacctg gtggaaggaa ctagaaacgc cgtcccgctg ggcctcgcgt
     4141 gatcctc
//
LOCUS       XM_032653785            1192 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ETS variant transcription factor 3 like
            (ETV3L), mRNA.
ACCESSION   XM_032653785
VERSION     XM_032653785.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1192
                     /gene="ETV3L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 Proteins, and 14%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764787"
     CDS             110..1192
                     /gene="ETV3L"
                     /codon_start=1
                     /product="ETS translocation variant 3-like protein"
                     /protein_id="XP_032509676.1"
                     /db_xref="GeneID:116764787"
                     /translation="MHCSCLDEGTPAITSCNFWISGLVFPDWACKAESSPGSRQIQLW
                     HFILELLQKEEFRHVIAWQQGEYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRY
                     YYNKRILHKTKGKRFTYKFNFSKLIVVNYPLWEVRAPPSLHLLLGAPALFQPALVPMG
                     VQSELLHSRLSTRWAMAEQLAGQRTPQGPPEASRDKKGSSSIVHRLGSAPAPCRLSPC
                     CHLGSLQDKLPSFASFTPPLPPPVPSDWPHLSGPFLPPVPTGQHFPGSSMPDTLLPGP
                     VGAAGTPGARHFPGLPLLAGLAQGARERLWLPSLRPEGLEVKPDATMDPREGFSSERQ
                     EPYIVEESPVSPNLENFKAVWPLDPP"
     misc_feature    227..487
                     /gene="ETV3L"
                     /note="erythroblast transformation specific domain;
                     Region: ETS; smart00413"
                     /db_xref="CDD:197710"
ORIGIN      
        1 cttcctcttt cacctccttc tcccctgcct tctttagctt cctcctaaga agggaccatt
       61 tccccccaag acccagacac agctcttgcc cccccccccg gaatggacaa tgcactgcag
      121 ctgcctggat gagggcaccc ctgccatcac ctcctgtaac ttctggatct caggcctggt
      181 cttccccgac tgggcctgca aagccgagtc gtccccgggc tcccggcaga tccagctatg
      241 gcacttcatc ctggagctgc tgcagaagga ggagttccgc catgtcatcg cctggcagca
      301 gggagagtac ggggagtttg tcatcaagga tccagacgag gtggcccgcc tctggggccg
      361 caggaagtgc aaaccacaga tgaattatga caagctgagc cgggccctca gatattacta
      421 caataagagg atcctgcaca agaccaaagg caaaaggttc acttacaagt tcaacttcag
      481 caagctcatc gtagtcaact accctctgtg ggaggtgcgg gcaccgccat ccctccactt
      541 gctgctggga gcccctgctc tctttcaacc agccctggtg cccatgggtg tacagagtga
      601 gctcctacat agcaggctgt ccacccgttg ggccatggca gagcagctgg ctggacagcg
      661 gacccctcaa ggaccaccag aggcctccag ggacaagaag ggaagcagca gcattgtcca
      721 ccgacttggc tctgccccag ccccctgccg gctcagccct tgctgccatt tggggagcct
      781 ccaagacaaa cttcccagtt ttgcctcctt cacccctccc ctgccacccc ctgtcccctc
      841 tgactggccc cacctctcag ggcctttttt gccccctgtc cccacagggc aacacttccc
      901 agggtcctcc atgccggaca ccctgctccc aggacctgta ggggctgcag ggaccccagg
      961 ggcccggcat tttcctggcc ttcctctgtt ggccgggctg gcgcaggggg ctagggagag
     1021 gctctggctc ccaagcctga ggcccgaggg gctggaggta aagcctgatg ccacgatgga
     1081 tcccagagag ggcttctcct cagagaggca ggaaccctac attgtagagg aaagtcctgt
     1141 gtcccccaat ctggagaact tcaaagcagt gtggcccttg gatcctcctt aa
//
LOCUS       XM_032653796            3240 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tetratricopeptide repeat domain 34
            (TTC34), mRNA.
ACCESSION   XM_032653796
VERSION     XM_032653796.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3240
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3240
                     /gene="TTC34"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:116764794"
     CDS             1..3240
                     /gene="TTC34"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 34"
                     /protein_id="XP_032509687.1"
                     /db_xref="GeneID:116764794"
                     /translation="MSAQELAACLCWQGDRHLAQGETPLATAFYLAAFSCHAPSALRS
                     VRAALAGARGPPVVATLEAWCRGDSQIPAIHWDGMAVVSLTGTLARAFLATLCPDHPA
                     AALHSLAGLLAHGYHGEVVQRCGALLDAHSQQSLELRLTRALAWLLSRTQVDAGVADY
                     LQAFAASADRMVAFVHTHQQPYLPALVSTLQDYISGCQEAGDGASQQETDCRRLLAAL
                     DPVGTWSNTPSPEALLQGGRYEDCQVACSRALEAASAGSRPQGERRATLLVTRAAATF
                     LLDSGAQDLLRDLHEAFSERPSGARRQLEAVLSAGDRERLRAQVQEAADVGFARFQET
                     VRSRPELREDSGRELLAPVTRALRVLWRVAPPGARQALGTRLAECLLLRGDAVGARAL
                     CERLLRPWSTGDRARDRAGDRAPLLALRGFCALHTGDAGRAQEDFQAVVELGPPHPGS
                     CVRALCGRGLLRVLAGSAFLGALDYVTACRLRPEEALLVTKAYVPWNQRGLLMTVLRE
                     EGRRMLQRGPEPGSESRPGRRSKAAETDSRAAQEGDARGVYQLAMLLMELDTEDEASR
                     LLAADALYRLGRLDDAHKALLVALSRRPQAAPVLVRLALLQLRRGFSYDASQLVKKVV
                     QSGDTACLQPTLDVFRHEDRQLLQGHCHARALAILQTQPGGAEGRAHTREAIAYLSLA
                     IFAAGSQASESLLARARCYGFLGQKKTAMFDVTSVLRAEPRNVQALCGRALLHLALDQ
                     QKEAVDDILSALKLSPRTAVPEIRSLKPEVQALITQGLSSRCRALLIQLPGTGARLSS
                     EDTQSLLAAGEALIEMDAAQPSWHILLADVLAAAGSFEKAGARLQKVLHLAPASEAAR
                     ARRGLLRLKKGDVPAATQDLQCLAETDTQDLGFLLRLLEASERQSLAQAAAQEADTLM
                     SSGQPGQALGYCSLAVLAGGGSACHLRRRAACLAELREFGRALGDLDHVLREGSGDGD
                     LQARAEDFCSQGRLLLGLGDEAGAAGAFTQALRLAPAVAQSNLWQRPGRAPAAHALLC
                     RAQHCLDEQRYTEAWTAAEGGLLVDPEHSGLKRLKARIRREAASGCRLH"
     misc_feature    <16..1230
                     /gene="TTC34"
                     /note="Predicted ATPase [General function prediction
                     only]; Region: COG3903"
                     /db_xref="CDD:443109"
     misc_feature    <709..1830
                     /gene="TTC34"
                     /note="Predicted ATPase [General function prediction
                     only]; Region: COG3903"
                     /db_xref="CDD:443109"
     misc_feature    1675..>3222
                     /gene="TTC34"
                     /note="putative PEP-CTERM system TPR-repeat lipoprotein;
                     Region: PEP_TPR_lipo; TIGR02917"
                     /db_xref="CDD:274350"
     misc_feature    2065..2160
                     /gene="TTC34"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    2173..2259
                     /gene="TTC34"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
ORIGIN      
        1 atgtcggccc aggagcttgc agcctgcctc tgctggcagg gggaccggca cctggcccag
       61 ggggagacac cactggccac cgccttctac ctggctgcct tcagctgcca cgccccctcg
      121 gccttgcgga gcgtccgagc tgccctggcc ggggctcggg ggccccccgt ggtggccacg
      181 ctggaggcct ggtgccgagg tgacagccag atcccggcca tccactggga tggcatggcg
      241 gtggtctctc tgacggggac cctggcccgc gccttcctgg ccacgctctg ccccgaccac
      301 ccagctgcag ccctgcactc cctggcaggc ctgctggccc acgggtacca cggggaggtg
      361 gtgcagcgct gcggggccct gctggacgct cactcccagc aaagtctgga gctgcggctg
      421 acccgtgccc tggcctggct cctgtccagg acgcaggtgg acgccggggt ggccgactac
      481 ctccaggcct ttgcagccag cgccgaccgg atggtggcct tcgttcacac ccaccagcag
      541 ccctacctcc ccgctctggt cagcaccctc caggactaca tctcgggatg ccaggaggct
      601 ggggacggtg ccagccagca ggagaccgac tgccggagac tcctggcagc cctggaccct
      661 gtgggcacct ggagcaacac cccgtcgccc gaagccctgc tccaaggtgg caggtatgag
      721 gactgccagg tggcctgcag ccgggccctg gaggccgcct cagcgggcag cagaccccaa
      781 ggtgagcgtc gggccaccct gctggtcacc cgcgctgccg cgaccttcct cctggacagc
      841 ggggcccagg acctccttcg ggacctgcac gaggccttct ccgagaggcc ctcaggagcg
      901 cggaggcagt tagaggccgt gctctcagcc ggggaccggg agcgtctgcg ggcgcaggtg
      961 caggaggccg cggacgtagg cttcgcgcgc ttccaggaga ccgtgcggag ccgccccgag
     1021 ctccgcgagg actcgggccg cgagctgctg gccccggtga cccgcgcgct ccgagtcctg
     1081 tggcgcgtgg caccgcccgg ggcgcgccag gcactgggca cccggctggc cgagtgcctg
     1141 ctgctgcggg gggacgcggt gggcgctcgg gctctgtgcg agcgcttgct gcggccctgg
     1201 agcaccgggg accgtgcgcg ggaccgggcc ggggaccgcg cgcccctgct ggcgctgcgc
     1261 ggcttctgcg cgttgcacac cggcgacgcg gggcgcgccc aggaggactt ccaggcggtg
     1321 gtggagctgg ggccgccgca ccctggtagc tgcgtgcgag ccctgtgcgg ccgcgggctg
     1381 ctgcgggtgc tggcgggcag tgcgttcctg ggcgcgctgg actatgtcac cgcctgccgc
     1441 ctgcggcccg aggaagctct gcttgtcaca aaggcctacg tgccctggaa ccagcggggg
     1501 ctgctaatga ccgtgctgcg ggaagagggc cgtaggatgc tgcagcgggg gccggagccg
     1561 ggatccgaga gcaggccagg ccgcaggagc aaggctgcgg agaccgacag ccgcgctgct
     1621 caggaagggg acgcccgtgg cgtgtaccag ctggccatgc tcctgatgga gctggacacg
     1681 gaggatgagg cttcgcgcct cctggcggcc gatgccctgt accgcctggg ccgcctggac
     1741 gacgcccaca aggccctgct ggtggccctc tcccgaaggc ctcaggcagc ccctgtgctg
     1801 gtgcggctgg ccctgctgca gctccggagg ggcttctcct atgatgccag ccagctggtg
     1861 aagaaggtgg tccagtctgg agacacagcc tgcctccagc ccaccctgga cgtcttccgc
     1921 catgaggacc gccagctgct gcagggccac tgccacgcaa gggccctggc catcctgcag
     1981 acgcaaccag gcggcgccga gggcagagcc cacaccaggg aggccatcgc ctacctctct
     2041 ctggccatct ttgctgcagg gagtcaggca agtgagtccc tgctcgcccg cgcccgctgt
     2101 tacgggttcc tgggccagaa gaagacggcc atgttcgacg tcacctccgt gctaagggct
     2161 gagccgagga acgtgcaggc gctgtgcgga cgggcgctct tgcacctggc cctggaccag
     2221 cagaaggagg ctgtggacga catcctctcg gctctgaagc tcagcccaag aacggcggtc
     2281 cctgagatcc gctctctgaa gccagaggtc caggccctca tcacgcaggg cctctcatcc
     2341 cgctgccggg ccctgttgat ccagctgcca ggcacagggg cccgcctgag cagcgaggac
     2401 acccagagcc tcctggccgc gggggaagca ctgatcgaaa tggatgccgc gcagcccagc
     2461 tggcacatcc tcctggcaga cgtgctggct gcagcgggca gctttgagaa ggccggcgcc
     2521 cgcctgcaaa aagtcctgca cctggcccct gcatcggagg cggcccgggc ccggcgtggc
     2581 ctgctccggc tcaagaaggg tgatgtgccg gccgccacac aggacctgca gtgtctggca
     2641 gagacagaca cccaggacct cggcttcctg ctgcgtctcc tggaggcctc agagaggcag
     2701 agcctcgccc aggccgcagc ccaggaagct gacaccctca tgagctcagg gcagcccggc
     2761 caggcgctgg gctactgctc actggccgtc ctggcaggtg gcggtagcgc ctgtcacctg
     2821 cgccggcggg ctgcctgcct agccgagcta cgggagtttg gccgggcact cggggacctg
     2881 gaccacgtgc tccgagaggg ttcaggggac ggtgacctcc aggcacgggc ggaggacttc
     2941 tgctcccagg gccgcctgct tctgggcctg ggggacgagg ccggggccgc cggggccttt
     3001 acccaggccc tcaggctggc gcccgccgta gcccagagca acctgtggca gcggccaggc
     3061 cgggcccccg ctgcccacgc gctcctgtgc agggcgcagc actgcctgga cgagcagcgc
     3121 tacacggagg cctggacggc agccgagggc ggcctcctgg tggacccgga gcacagcggc
     3181 ctgaagagac tgaaggcgag aatccggcgg gaggcagcct cgggctgccg gctccactga
//
LOCUS       XM_032653803           15329 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X1, mRNA.
ACCESSION   XM_032653803
VERSION     XM_032653803.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15329
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15329
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..3084
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X1"
                     /protein_id="XP_032509694.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLEL
                     GGSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQE
                     AQLELADVKSKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELK
                     SDNQRLKDENGALIRVISKLSK"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2776..3081
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 catgaacgac tttctaggtt ggaattggga ggcagtgacg ccagcagcga gcgggcctcg
     2701 gccagagccc gccgggaggc ccgcgaggcc cgcctggcca ccctgagcag ccgcgcgggg
     2761 gaagacagca gcagggacta cagaaagctc tacgagagcg ccctgaccga aaaccagaaa
     2821 ctgaagacaa aacttcagga ggcccagctc gagctggcag acgtgaaatc caagcttgag
     2881 aagatggccc agcagaaaca agacaagacc gccgaccggt cgtcggtgct ggagatggag
     2941 aagcgggaga ggcgagcctt ggagcggaag atgtcggaga tggaggagga gatgaaggtc
     3001 ctgacagaac tgaaatccga caaccagagg ctgaaggacg agaatggcgc cctcatcagg
     3061 gtcatcagca agctgtccaa gtaggccagg cgctggcttc ccgggacggc gctggccccg
     3121 cctctccccc gccggcgccc accggccaag aggagccacg aggacctttc tctggccgtc
     3181 atccagttgc cacctctgca ccctccgtgt cccctcctcc ggcccccgcc gctggggttc
     3241 agacagtttc catcgaagca cgactgcgat ccctcaaccg atagagccat ctggtggagg
     3301 cctgggggtc gccaggccag ccgtggaccc ggcctccggt tgccgggcca ctggtccacg
     3361 tagcacttgg tccaggcccc agccctgctg ccaccgccat gcgctctgat gtgggacaca
     3421 cgtggggagg tctctggagc tgccgccact agatccaagt tgacagtgac tccacgtcgg
     3481 ggcccctgct tgtccttgcc tctcaggaac tgacttttct ctaactcccg ccggtggtgg
     3541 tggaattttt tctaccagca acccagtggc acctgactgg tcttaacgcc cgttccctcc
     3601 gtgtctggcc ctctccccag ggctcaggtg accgggcttg cctcttctct ttctgccctt
     3661 ttactttcct tcctccgtcc gccccgcggc gcgtaccccg ggaggtgggc gctgggacag
     3721 agcaccgacc ccagcggtgt gcccgggcag tggcaccgcc ggcctctccc cggccaggcc
     3781 gggctcagct ccccaccgtc ctccccacgc agcgtttctc tgctagaaca cccgcctgcc
     3841 ccacctccct ttgacctggt ctcctctcct gaagagaagt gatgccgctg tgaggaggcg
     3901 tgggggcgtc tgaggccccc cccttcatgc cttgtgctgt gagcgtggtg ggcttgatgg
     3961 catctggggc gtgtccaggg gagagacgat tgtttgttcg gaagccagca ggaggaacga
     4021 gtctggactc ggagtggcga gacccggtgg ccaaggctgt gtcccaggga ccccaccccg
     4081 ctgtcaggga gcctctggcg gctgcgcctt gatcgctcga aagctgggcg gcttggatga
     4141 gagttgaggt cttcctgagg gtccccctgt aacgtgacag ccctgccgta cctgcggctg
     4201 gggaccccca aggtgctgac gctcccctgg gcctggaagt cggtccccac gcgccctgct
     4261 tttcccacct gacccgtctt ggctatcctc ctctggacga aaacctggac aggtggctcc
     4321 cttggttcag cacagaatta ggtcatgagt tcttgatgat gccccagcat taacacttaa
     4381 gtgtttgctt tttgtaggcg ctttatccct cggctggttt gagtgtgcag gtcgctttgg
     4441 ggttgccgga gacatttagt gtgtagcggt ccgttctcaa catacgctac ctctgtctag
     4501 tttctctttc tttccagccc cttccatggc cctcagaaac gtcacatgct ctttaaccca
     4561 gagccatgat caaggtccca gttcgggata ggagatttgt ctcgtggggc aaaacccctt
     4621 tctcagagtg tgcaaaatct tccatgtccg gccatttcct gcgaggagcg acgcctgggc
     4681 acgggtgatt tgtgttgtcg gggccggggg tgggttgcgt ggggggatgc tgagagcgaa
     4741 gtttcatatc ttccactgta gcgtttcctt tgttctgggg gaggggagcg ggcacgaggc
     4801 cttggccttg accctgactc tccggcacac cctgggtgct gggccaggac tggaaaagga
     4861 aactgaatta ttaggacgtc acctggactc tcttgcatca ggcagaccag gcagaggggc
     4921 cgcagcacgc cctccgctcc gtctgtgcct ttcgggggcg cgggcggctc tcggaacccg
     4981 gtcgggctgt gtcccgcgcc tccctccagc ccttctgtgt caggcctctc cactcaggaa
     5041 gccaggctct gtggctagag cccgtggtgt ggaccagccc gtgatctcag gcgctctctc
     5101 tcttatgcaa ctaagtctgt gagacagact ctgaatctgg tctctttcca ggctgtgctg
     5161 gtccgcgagg tgatggtcag gggccccctc gctacctctg gggttgcgcc ctgtcaccgc
     5221 ggtgcctgga tgggtggtca gcgctggggg gagggcctcg tcggccttgg ccagcggttt
     5281 tctggacagg tcgcacctct gggagtgaca accagcctct gagagtctga gtctctggct
     5341 gaagcctcac tgcttctccc cctcgtgcct gaggccccag gttgggcctt ggaagggtct
     5401 gaaggaagga cgagccctgg cctgtctcct cggcccactt gcagggcgtc agctcctctg
     5461 cttccctgcc ctgagcaaat cgtgtgcatg ttagcgccac tcggggcaaa cggcagctgg
     5521 aatcccactt ccaagcccgt ggaccccacc aaggtgtgtg tgagctacca gcgtggaggg
     5581 gagccgctcg tctccgtctc caggtttctg gccctggagc aggcctctcc cacccagacg
     5641 ggcacagaca gaggggcttc ccagcttcca ggccaccgtg tggctccgaa gggaaaacct
     5701 cggggactca gcagctgggc cagtagggag tgggcccctg gttccatccg ctgggtgagc
     5761 gctggcgtcc tggcctccag caccacccct gactctggac atggcggcca gcggtcatag
     5821 gtggtcctgc ccctgtcggg gcccagttac aagtacagag cgtggtcccc attacggggt
     5881 tttaaggcag gtttcagcac ctcggagggt gtgtctcctg accttgcagg aaggcagctg
     5941 tggcggcaga acgaggccgc tgaaaggacc gggcatcggg gcccggggcc agcgcctgtc
     6001 ctgaccagcc gtgtggccgt ctgtgaaagg gggctgggtc ggtggtcctc aggacccctt
     6061 cttggcttga gagtctgtga tgatttgttg attcctgaga ccagaacatt tctcactcag
     6121 agtttttgct ctaacttcaa aaattctttt cttctcattc agatggttta agagtgtgtc
     6181 aaggtgggaa ggtgaattca gtctggaggg tagtggccgt ccctcctgat ggcctggtga
     6241 gaatgtgcaa acccgcgggg gtggaaacac ggcctctgga tgagtggttc tcacgggagg
     6301 ggcctggctc ctggcgtcca gacagcagac ccgctgtgtt tccccccacc ggccactcag
     6361 tctcagctct gccttaagca ccagagggcc ttcctcgagg aaaccccagc ctttagtttt
     6421 gtggggccat cagatctgga cctgggctgt cgcaagccga ggtccctccc ctgagcaggg
     6481 ctgcagggag tttacaccaa aggctgcagg accgagcagc ccccggggag gagggggagg
     6541 gccagggtct ggggcccgca tccctcagcc tccaaacaag ccgaagcttt gctcggcccc
     6601 cccggatggg tatgtagact gtgtcaagga tggccattga tcgcttgtgc tctgattaga
     6661 ttgggcagta gatcagcttc actgcggccc cgggaaccgt cattgtcaca gctgcttggg
     6721 agtgaggtgg gctcgggaga atctggaccg gcgtagcagg cgatgcagcc cctcctgtga
     6781 gggtcgtggt cggacgtcag gttgaggagg ggtcctggga gcccctcctt gggaagtaca
     6841 tctagagaca gacacggctg agggttggcc tgatgctgcc ttaggaggtt tcgagctttg
     6901 gggatcactc ttgcttctaa gcctgtgtgc gcacgcgtgt ttgctacatg gagatttcaa
     6961 aatgcaacct catcacccag tttcatccaa gtgtgttact ctgttaacgc atctcttttg
     7021 cttcccccct ccattcccca gaggacgtct ctctgagctt cttctccagt taatctgttc
     7081 atttcggact gggaatctgc cagagtgacc tcttctgtta cttctccaga ttttccccta
     7141 atgctcccag taaacttttc ctgggtggcc ctttaaggtg acctcacgcc gctcctgtct
     7201 ttgcaaaata aacacacctt tcaccctccc gcctactctc atcttcctcc ccattaattt
     7261 tttgcttttc tcacttggag ctggtggtgc tttagaggag agattgtcca cgaatcagcc
     7321 ccgactcctc tggttgcaaa gctgactggc tgtgccactt tcccctcgaa ggtgaggttt
     7381 ggccctagcc tgggcggggc ccatgggcag cctggcctcg tctgcacagc tagagactga
     7441 gtgagtcctc aggagggcac cgggcagtgt cggtgcgtct gggacagtgg ctcatctgct
     7501 gttgccttgc aggagcgggt tcaggaaagg cagggccccg ggggcctcgt tgaagcctcg
     7561 atggtctcac agaagcagga ctcggggtgg gggcaggtcc tggacgtggg gtgctaggct
     7621 ggcctctgag cctgacctgc gtcttctctc cataccgcgc tcttctgggg agggggctcg
     7681 gagggaaata cgaggggctc aagccaagac agcaggaggt gggccgcagg ggtgggggtt
     7741 cccttgcacc cctgaaaggc tggggctgct gtcaggctgg cccccaggtg ggggagggcg
     7801 agactgtccc catgttccgc catgggggac tctgactcag gctgcagcgc cgtggtcccc
     7861 cctcgtcccc ctccgttccc tctgcctctg tcttgatcgg tggaaagagc tgtgagaccc
     7921 tccctggggt ctccacaccc ccattccagg ggtagcattt tgtctctgtt caccttaccc
     7981 ccacctgact tcccctccaa gaaagcacca gagggaccgt tttaagtcgg ctccgttgta
     8041 aatacacgtg gtggggatag gggtttaggg agggacccag atgcgctttg tgagctgaat
     8101 gtatttttat gcaattctga gtggcctttc aactccgaga tgaatgactt tgttttactg
     8161 gttattatat agtgttatta agtattctgt gtttgaaagt ttgggaataa taatatccac
     8221 atctacatga tgcctgtaaa cgcaacagta tttataaata agtaaattgt gttttaactt
     8281 tgtgactgtg tccacagttt aggaaatggg gtttatagaa ccttacatag ggccagcctg
     8341 tggtagtttc acgtcaccat ccttgccact gggggcctct gtcccaggga tggccacagg
     8401 ggccaaggag gagcctgggg ggctcccagc ctcgggggtg ggcactggtg ctctcacccc
     8461 gggaggccgg ggccctgaga aggtggcttc cttgggttcc cggggtctct gcccgctgct
     8521 ccgtgcagta ctgtctctgc agggccaccg ctcagttcag ggcagccgga accactccat
     8581 ggctccagac tctaaaggca gctggtgggg gtcactggag gctaaggtgc tcggccgctg
     8641 gcaggggggc cagggtcggg ccctccgtcc gtcctagtgc accccgtctg gtttgctcag
     8701 accccattca cacccagcgg aggccccgtc accgagctgc aggtcacgga ggtgagggag
     8761 ggaggcgtct tctcccctgc ggccacccag ctgctggcct gcggcccaaa tcggaggcaa
     8821 aggatcaggt ctggagtgag ggctcctctg ggtgcccgct gggcccgggg aagtcagcgg
     8881 agactgggca tcgcctggag gcggtgaggc ccggcccttc cctcctgaag actccccagc
     8941 cctcgtgctg cgctggcctt gcccccctca atcccagcct ctgccaggcc agccttacag
     9001 gctctgcctt ctcgtccctg gagcttgccc ctgagccgga tgcccccctc cacctgtggc
     9061 agaggggctg cgggggcctc cctgaggaga tggcccccag atcgcagtga ggacgggtca
     9121 cccttccagg tctgggggcg gtgctgccct accgtctctt tccagaaaat cctgaagccc
     9181 cgtcctcggc ctcaggagtc acagacgtct gaagaagtcg gctgcggtga gctaaccgag
     9241 ggcttgtagg aaccgtccct cctctgaccc caccccaggg ccagatggtg gccgcgcccc
     9301 gagcccggct ctgctggcag cggggagccg ggggtctagt ccaccccagc ccccgggagg
     9361 cctcgcccca gcagctgccc tgagggccca cgcgcccacc gcccagctgg acctggcctg
     9421 gccttctggt tcctccagcc cctgagggaa gagccgtgtc cccagcctca ccccccgcgc
     9481 tgaccctggg agcggctcct gctccccagc ccagcaggaa caaccagaga ccgcccccag
     9541 cgtgctttca gctcattcct ttaataagga aatgccgctt attacaaaag aacatgttga
     9601 caagaaatga gacaagaaca gagtccacgg ggctgggggc ggggggggtg ctggacgtgg
     9661 gtccttcctg ggacggcgaa ggcaggggtc ctggtggggc tgcgcgtgcc agggggcctg
     9721 gggcctgccc accatgctct tgcagtcttc agaccccagg atttcagaag cagcggatcc
     9781 cgccctcgca gaggaggcgc cagggcagaa catctggctt ctcggaaggg gtcctagggt
     9841 cccgatggct gaggggggcc ctacgcgccc ccggctcccg ccaccccccc agcacaaggg
     9901 gcctggctcg tagcgcacag ggcccacctg cccacctgcg gcctcgtcgg tgctcctgtc
     9961 agaccccctg catttccccc tcctcccatc agggctggcc ggaggggtcg ctcccgtgcg
    10021 tggcgttcct ctgcaccggg gcctgcggct cctgtccctc ctggttcagc gagatggctc
    10081 gggacctggg gtcccccggc ccccttccac ctcccgccct cccatgggac acctggccgg
    10141 ggctgggctg gggcaccggt gagggtccct cgagccagag ccgcccagcc gcaggagaga
    10201 gcatgcgggg gagcttggcc taccgtgctc tccagccccc ggggtccctc cccactgcca
    10261 ccctcggccc cccaagcccc cagtgtcacg tgagcagggc tggttgtcca gctgggcggc
    10321 atcagggacc tgaccacaga ctcggccacc aacagctcct gagaaccctc gtcgcctgca
    10381 cggggtaccc ccgtggccca tccacccccc actacgtgga gtcagactgc aacaccaggt
    10441 gagggagccg ggccagcggg ggcatctgct ggggccccac tgggagacct ggacaccatc
    10501 cgtcctcgca acgtggggct gggagcagac gtgacgatgg gtgagccctt cacgagtgtc
    10561 ctgaggggag ccctgggagg atggcttttc agtgaattca gagagtggga ggagggggca
    10621 caccacacac acacacacac aggacacagg gctggacgca gggcgccgag ggtcagctct
    10681 gcccacggtc ccctggtcag accagggcca gaggccaact ccccccggcg cgtggcaggg
    10741 caggggggcc gggagggcga ggggaaggac tttacacaca aagtcgaagg agcagctcaa
    10801 gttgtgtaaa acggggctgg gggcactcag cattgccatg cggttattta cagagttgag
    10861 acatgcgtct tggtgggacg agactggggt cgtgttcaca ggtgaccacc ctctccgtga
    10921 ggctcaaatg gcttcagaag gttctcgttt tgttgtcgct taaaagatat attcttgtgt
    10981 cttcaagtca cagtgtcccc cttcccaata ttgcagctca aagaatgggt agaatcctgg
    11041 tgacctgtcc ctgccccctg aggctagggg tgagggcgag gcagaagtgg tcgcaggact
    11101 ggcctgccag acagagcatg gacggcgggg cagcctgagt ttcggtagac tttgggagtg
    11161 aaaacgcaca gcctggaggc ctccagaacc cctcgtagcc aaccttaatt ctgtcccact
    11221 caggacagga tcccgacacc ccagaaacaa gcctggtggc agtgaaggtg ctctgtggac
    11281 tggcccgggc cctaggacca gcccacagtc ttcgtcaggt cccagcttct cggcatcaag
    11341 tgaagaatga cttcctgagg accgagggcc acgagcaagc ctgagcccca ctgcccagct
    11401 gctgctcccg gaggagacgg cttctcacca cctgcccagc cgggaaacgc agccgggcag
    11461 gaacacacgc ctgctccttt ctgacagtga aagagacgtc cctctgcctc aggtgcccgc
    11521 ggacgccagg gtggctagac ggggtgggag gtgccgccac gtgtgctggg aaagaggcgc
    11581 agctccgggt ctgggaagcc ttgagtgttc tgcgccgagg agagggccag ggcctgcagc
    11641 cgcagagacg agggcggctg aggggggccg ggggccggat gctctcgccc aggctgcagg
    11701 tttggaagga gactcggcgc acactggact aacgtatata tggcttttta tcgatgctgg
    11761 ggacacgagg tgcgcgggga acgaggacag tgaccgcggg gcagaacccg gcccgtgtcc
    11821 tccgccaccc ctcggaatgg ctgccctgcc cctcgggatt cacagcaagt ccctcaggaa
    11881 tgctaggcgg ggcctccccg cagggcccct gggaaagctc agccagctgt ccactaccct
    11941 cccctcctta cctgggcctc aggggaacta agaacctgta aaccttcctt ttcaagccct
    12001 ctggctctga acggataccg tgtcttcaga cagcgctgct ccactttgat taagggagga
    12061 gcacaggcgg gagggtgaga gatgccagtg actgctggct cccgtcctag aaagggagcc
    12121 ggcgtctggg tctcccaccg caagggcaaa ggcccggcag tttcatttgg gcctttccgg
    12181 gaagcgggtc ttctgtttct ttgcggtttg acatcacccg tcagcaaggt gaggtcgcgg
    12241 gacggacagt ccccgttcga gtccagccag tctagcctgt agctcaggtc tgtggtgtcc
    12301 cgggaagccc ccggcagcag gaggaggtcc acgccggcag cgggctttgg tcctggctct
    12361 gcacagtcca gtctccccgt ctcgcctccc aaacagccac tcccacgcag cgtgggagct
    12421 ccccagtccg agcagggttc taagccctct gctcccacac ggcaccctgt ctgcggccct
    12481 ccacgagcac ggaggatgcg cacacacgca cggatccctg gccgctggtt gccttccgtc
    12541 aggagtcagg tgctgccatt ccgttggtcc ggaacgctca gaaaatgcca ccacttcctg
    12601 ccaagagagc ctccctcgag gcccccggca gcgtgctgag cgcctgggag cagaagggca
    12661 gacgcatcct cgcgaggtga caaaggtcac acccgagagg ccagcaggag gcacctcggg
    12721 acctcagagg gagtgacgtc cggctggtgg atcttcacgt aggggtctgc gcggaggcag
    12781 cgggcgaggc cctgagcacg cacccggccc gccagcttcc aggccagggt ggccagaggt
    12841 gaagcctctg ggaccccgcc atggctgtgg ccgcctggag ctcgggccca cagggagagc
    12901 agcggaaagg cagctctcag cggggctccc cgccccgccc tgccctgagg acccaaagcc
    12961 gctcagacag cctgtgtgtc ccacgcatct gacgcctgct atccaggtcg agggctctgg
    13021 gccgcgaccg gctggcaggt gccccgcgat ggcggccaga agccacgcac acacctgaaa
    13081 ggccccccac gtccatcttc ttgaggttct tggcctccag gatgcagacg agcgagctgc
    13141 tgtcctccaa gccctcggca tccctttcct tgtgttagcg tcacagggca aggacctcgt
    13201 gactagcaag agggggctcc cgggcccgag agctcggccg gcgccatggc acagtcgagg
    13261 cttctcagag gcgggcctcg ggacccaggc tggccgcctc gcccacagcc cggtcagggt
    13321 gctgaccctt cctccgggcg acctgagccc cgaggtccct ccactcctcg atgggctgcc
    13381 ccaggtccac ggtgttcatg ggcaccttta cctccccgat gatgtcgtgc ttggagaagc
    13441 ggtcaaagtc gtagatggcc atcaccaggg tcttgccccc cagctcctgg aggaagacct
    13501 tgacgtaagg gtccgaggtg ccgcccatgt ccagggcggg cagctccgct gcctgcagga
    13561 cgcccacgcc ggggtgcccg ccccgtggag ccctgggggc cgccccgcgc acctggttgg
    13621 cctggaagtc atagtccagg gagaactgca gcttccccag gttctccggc tcctcgccct
    13681 cgccctcgcc ctcgccctcc gtcaggcccg tctcggcatc atcgtcgtcc tggggggctg
    13741 aggaggggag ggagggtcaa gggagaaaag gcggggagcc tgcccccgtg cagaccccaa
    13801 cccagagctg gaggggctcc gtcgggccct gcttcccctc agcccccagc ccggccctgt
    13861 ccctgcgggg ccagcacggc ccagatgcca cgcggcttct tgagtggcgg agcctccctg
    13921 tgacccccca ccccgccccc agctcaggcc accacgtggg cagcacgtac caggcgtgca
    13981 ggccgggcgt ccaggccagg cgagtccaca ggtgggagga gaagggagag agtggtaaga
    14041 aaatcctgca gctcagacca gccgcatggc agggccgggg cccccacagg ctcacacgca
    14101 cacgcacgtc cacgtgcgtg ctcacacacg ctctcacaca tgtgcacacg cagactcaaa
    14161 ggccacggcc cctggctgac ctcctgagat cagccctcct tcctccctcc acactgattc
    14221 cttgagcaag aaattcctcc cagaacaaac atggggaaag tgaggtgccc ggggcctctg
    14281 caaacttaaa aggagacaca ggtacatcag ggcgtcttcc aggctgctcc ctgaaagatg
    14341 gggagaagag ccacgtcttt gtggacgaga gacggaccca cagggcccca caatgaggac
    14401 atggtccagc agccctgccg gcaggaaacc gggtcacacg atggtggctt cccggtgggc
    14461 gggggtctct cttcccagca ttttgtccca acggcctcct ttcgggtcag tcaaggacag
    14521 tccctgctga cctgagcgag ctcttcccac ctggagagca tcgaggggcc tctggtcacc
    14581 cggccccgcc tacctggcca cccttcatgt ccttcatgtt catggcgttc ttggcgccct
    14641 tgcccttctc cttcttgttc ttcttcttct tccagcagca cttcttgcag atgcagaagc
    14701 agcaggtgag gagcagaagg cccaggagca ccgcgatggc gcccagcgcc caggggggca
    14761 ctgcccacag ggagacgggg tcagcggcgc tcgggcagcc ccgacccctc gaggatagaa
    14821 agctgggtcg gggcccggcc ccgctgccgc accccgcgtt gtaaacccac gttaagttgc
    14881 atgcttcggt gccctcccct ttctgccacc ccagcaggga cagcctgtga cagggacagc
    14941 agccaggcgc acaccacggg gccctcatct gggctctgct gagatctgac ggctttgacc
    15001 cttggaactg tggctcacac gaaggatggg agggtcctca tcagaccccg gtggggtagg
    15061 aaggcccggc cctcaggcgc agtcctgaga gggctgagcc tgcgccagga ggccgggctc
    15121 agagggcccg cgggtctggg gaagtgcggg gaggggcggg ccgcgggccg gccggggctg
    15181 ctctccgagg tgctgaagca ccgcctccct ccagtggggc tgctccccga atccggacct
    15241 cgggtttctc cccacagcct ttaccaggaa tccaggaagc agtagggggt tttattttct
    15301 atcttgcaaa ataaagcagt tttaaagta
//
LOCUS       XM_032653804           15451 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X2, mRNA.
ACCESSION   XM_032653804
VERSION     XM_032653804.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15451
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15451
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..3084
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X1"
                     /protein_id="XP_032509695.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLEL
                     GGSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQE
                     AQLELADVKSKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELK
                     SDNQRLKDENGALIRVISKLSK"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2776..3081
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 catgaacgac tttctaggtt ggaattggga ggcagtgacg ccagcagcga gcgggcctcg
     2701 gccagagccc gccgggaggc ccgcgaggcc cgcctggcca ccctgagcag ccgcgcgggg
     2761 gaagacagca gcagggacta cagaaagctc tacgagagcg ccctgaccga aaaccagaaa
     2821 ctgaagacaa aacttcagga ggcccagctc gagctggcag acgtgaaatc caagcttgag
     2881 aagatggccc agcagaaaca agacaagacc gccgaccggt cgtcggtgct ggagatggag
     2941 aagcgggaga ggcgagcctt ggagcggaag atgtcggaga tggaggagga gatgaaggtc
     3001 ctgacagaac tgaaatccga caaccagagg ctgaaggacg agaatggcgc cctcatcagg
     3061 gtcatcagca agctgtccaa gtaggccagg cgctggcttc ccgggacggc gctggccccg
     3121 cctctccccc gccggcgccc accggccaag aggagccacg aggacctttc tctggccgtc
     3181 atccagttgc cacctctgca ccctccgtgt cccctcctcc ggcccccgcc gctggggttc
     3241 agacagtttc catcgaagca cgactgcgat ccctcaaccg atagagccat ctggtggagg
     3301 cctgggggtc gccaggccag ccgtggaccc ggcctccggt tgccgggcca ctggtccacg
     3361 tagcacttgg tccaggcccc agccctgctg ccaccgccat gcgctctgat gtgggacaca
     3421 cgtggggagg tctctggagc tgccgccact agatccaagt tgacagtgac tccacgtcgg
     3481 ggcccctgct tgtccttgcc tctcaggaac tgacttttct ctaactcccg ccggtggtgg
     3541 tggaattttt tctaccagca acccagtggc acctgactgg tcttaacgcc cgttccctcc
     3601 gtgtctggcc ctctccccag ggctcaggtg accgggcttg cctcttctct ttctgccctt
     3661 ttactttcct tcctccgtcc gccccgcggc gcgtaccccg ggaggtgggc gctgggacag
     3721 agcaccgacc ccagcggtgt gcccgggcag tggcaccgcc ggcctctccc cggccaggcc
     3781 gggctcagct ccccaccgtc ctccccacgc agcgtttctc tgctagaaca cccgcctgcc
     3841 ccacctccct ttgacctggt ctcctctcct gaagagaagt gatgccgctg tgaggaggcg
     3901 tgggggcgtc tgaggccccc cccttcatgc cttgtgctgt gagcgtggtg ggcttgatgg
     3961 catctggggc gtgtccaggg gagagacgat tgtttgttcg gaagccagca ggaggaacga
     4021 gtctggactc ggagtggcga gacccggtgg ccaaggctgt gtcccaggga ccccaccccg
     4081 ctgtcaggga gcctctggcg gctgcgcctt gatcgctcga aagctgggcg gcttggatga
     4141 gagttgaggt cttcctgagg gtccccctgt aacgtgacag ccctgccgta cctgcggctg
     4201 gggaccccca aggtgctgac gctcccctgg gcctggaagt cggtccccac gcgccctgct
     4261 tttcccacct gacccgtctt ggctatcctc ctctggacga aaacctggac aggtggctcc
     4321 cttggttcag cacagaatta ggtcatgagt tcttgatgat gccccagcat taacacttaa
     4381 gtgtttgctt tttgtaggcg ctttatccct cggctggttt gagtgtgcag gtcgctttgg
     4441 ggttgccgga gacatttagt gtgtagcggt ccgttctcaa catacgctac ctctgtctag
     4501 tttctctttc tttccagccc cttccatggc cctcagaaac gtcacatgct ctttaaccca
     4561 gagccatgat caaggtccca gttcgggata ggagatttgt ctcgtggggc aaaacccctt
     4621 tctcagagtg tgcaaaatct tccatgtccg gccatttcct gcgaggagcg acgcctgggc
     4681 acgggtgatt tgtgttgtcg gggccggggg tgggttgcgt ggggggatgc tgagagcgaa
     4741 gtttcatatc ttccactgta gcgtttcctt tgttctgggg gaggggagcg ggcacgaggc
     4801 cttggccttg accctgactc tccggcacac cctgggtgct gggccaggac tggaaaagga
     4861 aactgaatta ttaggacgtc acctggactc tcttgcatca ggcagaccag gcagaggggc
     4921 cgcagcacgc cctccgctcc gtctgtgcct ttcgggggcg cgggcggctc tcggaacccg
     4981 gtcgggctgt gtcccgcgcc tccctccagc ccttctgtgt caggcctctc cactcaggaa
     5041 gccaggctct gtggctagag cccgtggtgt ggaccagccc gtgatctcag gcgctctctc
     5101 tcttatgcaa ctaagtctgt gagacagact ctgaatctgg tctctttcca ggctgtgctg
     5161 gtccgcgagg tgatggtcag gggccccctc gctacctctg gggttgcgcc ctgtcaccgc
     5221 ggtgcctgga tgggtggtca gcgctggggg gagggcctcg tcggccttgg ccagcggttt
     5281 tctggacagg tcgcacctct gggagtgaca accagcctct gagagtctga gtctctggct
     5341 gaagcctcac tgcttctccc cctcgtgcct gaggccccag gttgggcctt ggaagggtct
     5401 gaaggaagga cgagccctgg cctgtctcct cggcccactt gcagggcgtc agctcctctg
     5461 cttccctgcc ctgagcaaat cgtgtgcatg ttagcgccac tcggggcaaa cggcagctgg
     5521 aatcccactt ccaagcccgt ggaccccacc aaggtgtgtg tgagctacca gcgtggaggg
     5581 gagccgctcg tctccgtctc caggtttctg gccctggagc aggcctctcc cacccagacg
     5641 ggcacagaca gaggggcttc ccagcttcca ggccaccgtg tggctccgaa gggaaaacct
     5701 cggggactca gcagctgggc cagtagggag tgggcccctg gttccatccg ctgggtgagc
     5761 gctggcgtcc tggcctccag caccacccct gactctggac atggcggcca gcggtcatag
     5821 gtggtcctgc ccctgtcggg gcccagttac aagtacagag cgtggtcccc attacggggt
     5881 tttaaggcag gtttcagcac ctcggagggt gtgtctcctg accttgcagg aaggcagctg
     5941 tggcggcaga acgaggccgc tgaaaggacc gggcatcggg gcccggggcc agcgcctgtc
     6001 ctgaccagcc gtgtggccgt ctgtgaaagg gggctgggtc ggtggtcctc aggacccctt
     6061 cttggcttga gagtctgtga tgatttgttg attcctgaga ccagaacatt tctcactcag
     6121 agtttttgct ctaacttcaa aaattctttt cttctcattc agatggttta agagtgtgtc
     6181 aaggtgggaa ggtgaattca gtctggaggg tagtggccgt ccctcctgat ggcctggtga
     6241 gaatgtgcaa acccgcgggg gtggaaacac ggcctctgga tgagtggttc tcacgggagg
     6301 ggcctggctc ctggcgtcca gacagcagac ccgctgtgtt tccccccacc ggccactcag
     6361 tctcagctct gccttaagca ccagagggcc ttcctcgagg aaaccccagc ctttagtttt
     6421 gtggggccat cagatctgga cctgggctgt cgcaagccga ggtccctccc ctgagcaggg
     6481 ctgcagggag tttacaccaa aggctgcagg accgagcagc ccccggggag gagggggagg
     6541 gccagggtct ggggcccgca tccctcagcc tccaaacaag ccgaagcttt gctcggcccc
     6601 cccggatggg tatgtagact gtgtcaagga tggccattga tcgcttgtgc tctgattaga
     6661 ttgggcagta gatcagcttc actgcggccc cgggaaccgt cattgtcaca gctgcttggg
     6721 agtgaggtgg gctcgggaga atctggaccg gcgtagcagg cgatgcagcc cctcctgtga
     6781 gggtcgtggt cggacgtcag gttgaggagg ggtcctggga gcccctcctt gggaagtaca
     6841 tctagagaca gacacggctg agggttggcc tgatgctgcc ttaggaggtt tcgagctttg
     6901 gggatcactc ttgcttctaa gcctgtgtgc gcacgcgtgt ttgctacatg gagatttcaa
     6961 aatgcaacct catcacccag tttcatccaa gtgtgttact ctgttaacgc atctcttttg
     7021 cttcccccct ccattcccca gaggacgtct ctctgagctt cttctccagt taatctgttc
     7081 atttcggact gggaatctgc cagagtgacc tcttctgtta cttctccaga ttttccccta
     7141 atgctcccag taaacttttc ctgggtggcc ctttaaggtg acctcacgcc gctcctgtct
     7201 ttgcaaaata aacacacctt tcaccctccc gcctactctc atcttcctcc ccattaattt
     7261 tttgcttttc tcacttggag ctggtggtgc tttagaggag agattgtcca cgaatcagcc
     7321 ccgactcctc tggttgcaaa gctgactggc tgtgccactt tcccctcgaa ggtgaggttt
     7381 ggccctagcc tgggcggggc ccatgggcag cctggcctcg tctgcacagc tagagactga
     7441 gtgagtcctc aggagggcac cgggcagtgt cggtgcgtct gggacagtgg ctcatctgct
     7501 gttgccttgc aggagcgggt tcaggaaagg cagggccccg ggggcctcgt tgaagcctcg
     7561 atggtctcac agaagcagga ctcggggtgg gggcaggtcc tggacgtggg gtgctaggct
     7621 ggcctctgag cctgacctgc gtcttctctc cataccgcgc tcttctgggg agggggctcg
     7681 gagggaaata cgaggggctc aagccaagac agcaggaggt gggccgcagg ggtgggggtt
     7741 cccttgcacc cctgaaaggc tggggctgct gtcaggctgg cccccaggtg ggggagggcg
     7801 agactgtccc catgttccgc catgggggac tctgactcag gctgcagcgc cgtggtcccc
     7861 cctcgtcccc ctccgttccc tctgcctctg tcttgatcgg tggaaagagc tgtgagaccc
     7921 tccctggggt ctccacaccc ccattccagg ggtagcattt tgtctctgtt caccttaccc
     7981 ccacctgact tcccctccaa gaaagcacca gagggaccgt tttaagtcgg ctccgttgta
     8041 aatacacgtg gtggggatag gggtttaggg agggacccag atgcgctttg tgagctgaat
     8101 gtatttttat gcaattctga gtggcctttc aactccgaga tgaatgactt tgttttactg
     8161 gttattatat agtgttatta agtattctgt gtttgaaagt ttgggaataa taatatccac
     8221 atctacatga tgcctgtaaa cgcaacagta tttataaata agtaaattgt gttttaactt
     8281 tgtgactgtg tccacagttt aggaaatggg gtttatagaa ccttacatag ggccagcctg
     8341 tggtagtttc acgtcaccat ccttgccact gggggcctct gtcccaggga tggccacagg
     8401 ggccaaggag gagcctgggg ggctcccagc ctcgggggtg ggcactggtg ctctcacccc
     8461 gggaggccgg ggccctgaga aggtggcttc cttgggttcc cggggtctct gcccgctgct
     8521 ccgtgcagta ctgtctctgc agggccaccg ctcagttcag ggcagccgga accactccat
     8581 ggctccagac tctaaaggca gctggtgggg gtcactggag gctaaggtgc tcggccgctg
     8641 gcaggggggc cagggtcggg ccctccgtcc gtcctagtgc accccgtctg gtttgctcag
     8701 accccattca cacccagcgg aggccccgtc accgagctgc aggtcacgga ggtgagggag
     8761 ggaggcgtct tctcccctgc ggccacccag ctgctggcct gcggcccaaa tcggaggcaa
     8821 aggatcaggt ctggagtgag ggctcctctg ggtgcccgct gggcccgggg aagtcagcgg
     8881 agactgggca tcgcctggag gcggtgaggc ccggcccttc cctcctgaag actccccagc
     8941 cctcgtgctg cgctggcctt gcccccctca atcccagcct ctgccaggcc agccttacag
     9001 gctctgcctt ctcgtccctg gagcttgccc ctgagccgga tgcccccctc cacctgtggc
     9061 agaggggctg cgggggcctc cctgaggaga tggcccccag atcgcagtga ggacgggtca
     9121 cccttccagg tctgggggcg gtgctgccct accgtctctt tccagaaaat cctgaagccc
     9181 cgtcctcggc ctcaggagtc acagacgtct gaagaagtcg gctgcggtga gctaaccgag
     9241 ggcttgtagg aaccgtccct cctctgaccc caccccaggg ccagatggtg gccgcgcccc
     9301 gagcccggct ctgctggcag cggggagccg ggggtctagt ccaccccagc ccccgggagg
     9361 cctcgcccca gcagctgccc tgagggccca cgcgcccacc gcccagctgg acctggcctg
     9421 gccttctggt tcctccagcc cctgagggaa gagccgtgtc cccagcctca ccccccgcgc
     9481 tgaccctggg agcggctcct gctccccagc ccagcaggaa caaccagaga ccgcccccag
     9541 cgtgctttca gctcattcct ttaataagga aatgccgctt attacaaaag aacatgttga
     9601 caagaaatga gacaagaaca gagtccacgg ggctgggggc ggggggggtg ctggacgtgg
     9661 gtccttcctg ggacggcgaa ggcaggggtc ctggtggggc tgcgcgtgcc agggggcctg
     9721 gggcctgccc accatgctct tgcagtcttc agaccccagg atttcagaag cagcggatcc
     9781 cgccctcgca gaggaggcgc cagggcagaa catctggctt ctcggaaggg gtcctagggt
     9841 cccgatggct gaggggggcc ctacgcgccc ccggctcccg ccaccccccc agcacaaggg
     9901 gcctggctcg tagcgcacag ggcccacctg cccacctgcg gcctcgtcgg tgctcctgtc
     9961 agaccccctg catttccccc tcctcccatc agggctggcc ggaggggtcg ctcccgtgcg
    10021 tggcgttcct ctgcaccggg gcctgcggct cctgtccctc ctggttcagc gagatggctc
    10081 gggacctggg gtcccccggc ccccttccac ctcccgccct cccatgggac acctggccgg
    10141 ggctgggctg gggcaccggt gagggtccct cgagccagag ccgcccagcc gcaggagaga
    10201 gcatgcgggg gagcttggcc taccgtgctc tccagccccc ggggtccctc cccactgcca
    10261 ccctcggccc cccaagcccc cagtgtcacg tgagcagggc tggttgtcca gctgggcggc
    10321 atcagggacc tgaccacaga ctcggccacc aacagctcct gagaaccctc gtcgcctgca
    10381 cggggtaccc ccgtggccca tccacccccc actacgtgga gtcagactgc aacaccaggt
    10441 gagggagccg ggccagcggg ggcatctgct ggggccccac tgggagacct ggacaccatc
    10501 cgtcctcgca acgtggggct gggagcagac gtgacgatgg gtgagccctt cacgagtgtc
    10561 ctgaggggag ccctgggagg atggcttttc agtgaattca gagagtggga ggagggggca
    10621 caccacacac acacacacac aggacacagg gctggacgca gggcgccgag ggtcagctct
    10681 gcccacggtc ccctggtcag accagggcca gaggccaact ccccccggcg cgtggcaggg
    10741 caggggggcc gggagggcga ggggaaggac tttacacaca aagtcgaagg agcagctcaa
    10801 gttgtgtaaa acggggctgg gggcactcag cattgccatg cggttattta cagagttgag
    10861 acatgcgtct tggtgggacg agactggggt cgtgttcaca ggtgaccacc ctctccgtga
    10921 ggctcaaatg gcttcagaag gttctcgttt tgttgtcgct taaaagatat attcttgtgt
    10981 cttcaagtca cagtgtcccc cttcccaata ttgcagctca aagaatgggt agaatcctgg
    11041 tgacctgtcc ctgccccctg aggctagggg tgagggcgag gcagaagtgg tcgcaggact
    11101 ggcctgccag acagagcatg gacggcgggg cagcctgagt ttcggtagac tttgggagtg
    11161 aaaacgcaca gcctggaggc ctccagaacc cctcgtagcc aaccttaatt ctgtcccact
    11221 caggacagga tcccgacacc ccagaaacaa gcctggtggc agtgaaggtg ctctgtggac
    11281 tggcccgggc cctaggacca gcccacagtc ttcgtcaggt cccagcttct cggcatcaag
    11341 tgaagaatga cttcctgagg accgagggcc acgagcaagc ctgagcccca ctgcccagct
    11401 gctgctcccg gaggagacgg cttctcacca cctgcccagc cgggaaacgc agccgggcag
    11461 gaacacacgc ctgctccttt ctgacagtga aagagacgtc cctctgcctc aggtgcccgc
    11521 ggacgccagg gtggctagac ggggtgggag gtgccgccac gtgtgctggg aaagaggcgc
    11581 agctccgggt ctgggaagcc ttgagtgttc tgcgccgagg agagggccag ggcctgcagc
    11641 cgcagagacg agggcggctg aggggggccg ggggccggat gctctcgccc aggctgcagg
    11701 tttggaagga gactcggcgc acactggact aacgtatata tggcttttta tcgatgctgg
    11761 ggacacgagg tgcgcgggga acgaggacag tgaccgcggg gcagaacccg gcccgtgtcc
    11821 tccgccaccc ctcggaatgg ctgccctgcc cctcgggatt cacagcaagt ccctcaggaa
    11881 tgctaggcgg ggcctccccg cagggcccct gggaaagctc agccagctgt ccactaccct
    11941 cccctcctta cctgggcctc aggggaacta agaacctgta aaccttcctt ttcaagccct
    12001 ctggctctga acggataccg tgtcttcaga cagcgctgct ccactttgat taagggagga
    12061 gcacaggcgg gagggtgaga gatgccagtg actgctggct cccgtcctag aaagggagcc
    12121 ggcgtctggg tctcccaccg caagggcaaa ggcccggcag tttcatttgg gcctttccgg
    12181 gaagcgggtc ttctgtttct ttgcggtttg acatcacccg tcagcaaggt gaggtcgcgg
    12241 gacggacagt ccccgttcga gtccagccag tctagcctgt agctcaggtc tgtggtgtcc
    12301 cgggaagccc ccggcagcag gaggaggtcc acgccggcag cgggctttgg tcctggctct
    12361 gcacagtcca gtctccccgt ctcgcctccc aaacagccac tcccacgcag cgtgggagct
    12421 ccccagtccg agcagggttc taagccctct gctcccacac ggcaccctgt ctgcggccct
    12481 ccacgagcac ggaggatgcg cacacacgca cggatccctg gccgctggtt gccttccgtc
    12541 aggagtcagg tgctgccatt ccgttggtcc ggaacgctca gaaaatgcca ccacttcctg
    12601 ccaagagagc ctccctcgag gcccccggca gcgtgctgag cgcctgggag cagaagggca
    12661 gacgcatcct cgcgaggtga caaaggtcac acccgagagg ccagcaggag gcacctcggg
    12721 acctcagagg gagtgacgtc cggctgccca gcacctggat ctgctcgaag gggatctcga
    12781 agctgaagga ctcgttgaag tacgggttca gggtcttctt cttcaccgtc gtcttcttct
    12841 tcttgagcct cttgccgttc tgcatcaggt ggatcttcac gtaggggtct gcgcggaggc
    12901 agcgggcgag gccctgagca cgcacccggc ccgccagctt ccaggccagg gtggccagag
    12961 gtgaagcctc tgggaccccg ccatggctgt ggccgcctgg agctcgggcc cacagggaga
    13021 gcagcggaaa ggcagctctc agcggggctc cccgccccgc cctgccctga ggacccaaag
    13081 ccgctcagac agcctgtgtg tcccacgcat ctgacgcctg ctatccaggt cgagggctct
    13141 gggccgcgac cggctggcag gtgccccgcg atggcggcca gaagccacgc acacacctga
    13201 aaggcccccc acgtccatct tcttgaggtt cttggcctcc aggatgcaga cgagcgagct
    13261 gctgtcctcc aagccctcgg catccctttc cttgtgttag cgtcacaggg caaggacctc
    13321 gtgactagca agagggggct cccgggcccg agagctcggc cggcgccatg gcacagtcga
    13381 ggcttctcag aggcgggcct cgggacccag gctggccgcc tcgcccacag cccggtcagg
    13441 gtgctgaccc ttcctccggg cgacctgagc cccgaggtcc ctccactcct cgatgggctg
    13501 ccccaggtcc acggtgttca tgggcacctt tacctccccg atgatgtcgt gcttggagaa
    13561 gcggtcaaag tcgtagatgg ccatcaccag ggtcttgccc cccagctcct ggaggaagac
    13621 cttgacgtaa gggtccgagg tgccgcccat gtccagggcg ggcagctccg ctgcctgcag
    13681 gacgcccacg ccggggtgcc cgccccgtgg agccctgggg gccgccccgc gcacctggtt
    13741 ggcctggaag tcatagtcca gggagaactg cagcttcccc aggttctccg gctcctcgcc
    13801 ctcgccctcg ccctcgccct ccgtcaggcc cgtctcggca tcatcgtcgt cctggggggc
    13861 tgaggagggg agggagggtc aagggagaaa aggcggggag cctgcccccg tgcagacccc
    13921 aacccagagc tggaggggct ccgtcgggcc ctgcttcccc tcagccccca gcccggccct
    13981 gtccctgcgg ggccagcacg gcccagatgc cacgcggctt cttgagtggc ggagcctccc
    14041 tgtgaccccc caccccgccc ccagctcagg ccaccacgtg ggcagcacgt accaggcgtg
    14101 caggccgggc gtccaggcca ggcgagtcca caggtgggag gagaagggag agagtggtaa
    14161 gaaaatcctg cagctcagac cagccgcatg gcagggccgg ggcccccaca ggctcacacg
    14221 cacacgcacg tccacgtgcg tgctcacaca cgctctcaca catgtgcaca cgcagactca
    14281 aaggccacgg cccctggctg acctcctgag atcagccctc cttcctccct ccacactgat
    14341 tccttgagca agaaattcct cccagaacaa acatggggaa agtgaggtgc ccggggcctc
    14401 tgcaaactta aaaggagaca caggtacatc agggcgtctt ccaggctgct ccctgaaaga
    14461 tggggagaag agccacgtct ttgtggacga gagacggacc cacagggccc cacaatgagg
    14521 acatggtcca gcagccctgc cggcaggaaa ccgggtcaca cgatggtggc ttcccggtgg
    14581 gcgggggtct ctcttcccag cattttgtcc caacggcctc ctttcgggtc agtcaaggac
    14641 agtccctgct gacctgagcg agctcttccc acctggagag catcgagggg cctctggtca
    14701 cccggccccg cctacctggc cacccttcat gtccttcatg ttcatggcgt tcttggcgcc
    14761 cttgcccttc tccttcttgt tcttcttctt cttccagcag cacttcttgc agatgcagaa
    14821 gcagcaggtg aggagcagaa ggcccaggag caccgcgatg gcgcccagcg cccagggggg
    14881 cactgcccac agggagacgg ggtcagcggc gctcgggcag ccccgacccc tcgaggatag
    14941 aaagctgggt cggggcccgg ccccgctgcc gcaccccgcg ttgtaaaccc acgttaagtt
    15001 gcatgcttcg gtgccctccc ctttctgcca ccccagcagg gacagcctgt gacagggaca
    15061 gcagccaggc gcacaccacg gggccctcat ctgggctctg ctgagatctg acggctttga
    15121 cccttggaac tgtggctcac acgaaggatg ggagggtcct catcagaccc cggtggggta
    15181 ggaaggcccg gccctcaggc gcagtcctga gagggctgag cctgcgccag gaggccgggc
    15241 tcagagggcc cgcgggtctg gggaagtgcg gggaggggcg ggccgcgggc cggccggggc
    15301 tgctctccga ggtgctgaag caccgcctcc ctccagtggg gctgctcccc gaatccggac
    15361 ctcgggtttc tccccacagc ctttaccagg aatccaggaa gcagtagggg gttttatttt
    15421 ctatcttgca aaataaagca gttttaaagt a
//
LOCUS       XM_032653805           14853 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X3, mRNA.
ACCESSION   XM_032653805
VERSION     XM_032653805.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14853
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..14853
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..3084
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X1"
                     /protein_id="XP_032509696.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLEL
                     GGSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQE
                     AQLELADVKSKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELK
                     SDNQRLKDENGALIRVISKLSK"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2776..3081
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 catgaacgac tttctaggtt ggaattggga ggcagtgacg ccagcagcga gcgggcctcg
     2701 gccagagccc gccgggaggc ccgcgaggcc cgcctggcca ccctgagcag ccgcgcgggg
     2761 gaagacagca gcagggacta cagaaagctc tacgagagcg ccctgaccga aaaccagaaa
     2821 ctgaagacaa aacttcagga ggcccagctc gagctggcag acgtgaaatc caagcttgag
     2881 aagatggccc agcagaaaca agacaagacc gccgaccggt cgtcggtgct ggagatggag
     2941 aagcgggaga ggcgagcctt ggagcggaag atgtcggaga tggaggagga gatgaaggtc
     3001 ctgacagaac tgaaatccga caaccagagg ctgaaggacg agaatggcgc cctcatcagg
     3061 gtcatcagca agctgtccaa gtaggccagg cgctggcttc ccgggacggc gctggccccg
     3121 cctctccccc gccggcgccc accggccaag aggagccacg aggacctttc tctggccgtc
     3181 atccagttgc cacctctgca ccctccgtgt cccctcctcc ggcccccgcc gctggggttc
     3241 agacagtttc catcgaagca cgactgcgat ccctcaaccg atagagccat ctggtggagg
     3301 cctgggggtc gccaggccag ccgtggaccc ggcctccggt tgccgggcca ctggtccacg
     3361 tagcacttgg tccaggcccc agccctgctg ccaccgccat gcgctctgat gtgggacaca
     3421 cgtggggagg tctctggagc tgccgccact agatccaagt tgacagtgac tccacgtcgg
     3481 ggcccctgct tgtccttgcc tctcaggaac tgacttttct ctaactcccg ccggtggtgg
     3541 tggaattttt tctaccagca acccagtggc acctgactgg tcttaacgcc cgttccctcc
     3601 gtgtctggcc ctctccccag ggctcaggtg accgggcttg cctcttctct ttctgccctt
     3661 ttactttcct tcctccgtcc gccccgcggc gcgtaccccg ggaggtgggc gctgggacag
     3721 agcaccgacc ccagcggtgt gcccgggcag tggcaccgcc ggcctctccc cggccaggcc
     3781 gggctcagct ccccaccgtc ctccccacgc agcgtttctc tgctagaaca cccgcctgcc
     3841 ccacctccct ttgacctggt ctcctctcct gaagagaagt gatgccgctg tgaggaggcg
     3901 tgggggcgtc tgaggccccc cccttcatgc cttgtgctgt gagcgtggtg ggcttgatgg
     3961 catctggggc gtgtccaggg gagagacgat tgtttgttcg gaagccagca ggaggaacga
     4021 gtctggactc ggagtggcga gacccggtgg ccaaggctgt gtcccaggga ccccaccccg
     4081 ctgtcaggga gcctctggcg gctgcgcctt gatcgctcga aagctgggcg gcttggatga
     4141 gagttgaggt cttcctgagg gtccccctgt aacgtgacag ccctgccgta cctgcggctg
     4201 gggaccccca aggtgctgac gctcccctgg gcctggaagt cggtccccac gcgccctgct
     4261 tttcccacct gacccgtctt ggctatcctc ctctggacga aaacctggac aggtggctcc
     4321 cttggttcag cacagaatta ggtcatgagt tcttgatgat gccccagcat taacacttaa
     4381 gtgtttgctt tttgtaggcg ctttatccct cggctggttt gagtgtgcag gtcgctttgg
     4441 ggttgccgga gacatttagt gtgtagcggt ccgttctcaa catacgctac ctctgtctag
     4501 tttctctttc tttccagccc cttccatggc cctcagaaac gtcacatgct ctttaaccca
     4561 gagccatgat caaggtccca gttcgggata ggagatttgt ctcgtggggc aaaacccctt
     4621 tctcagagtg tgcaaaatct tccatgtccg gccatttcct gcgaggagcg acgcctgggc
     4681 acgggtgatt tgtgttgtcg gggccggggg tgggttgcgt ggggggatgc tgagagcgaa
     4741 gtttcatatc ttccactgta gcgtttcctt tgttctgggg gaggggagcg ggcacgaggc
     4801 cttggccttg accctgactc tccggcacac cctgggtgct gggccaggac tggaaaagga
     4861 aactgaatta ttaggacgtc acctggactc tcttgcatca ggcagaccag gcagaggggc
     4921 cgcagcacgc cctccgctcc gtctgtgcct ttcgggggcg cgggcggctc tcggaacccg
     4981 gtcgggctgt gtcccgcgcc tccctccagc ccttctgtgt caggcctctc cactcaggaa
     5041 gccaggctct gtggctagag cccgtggtgt ggaccagccc gtgatctcag gcgctctctc
     5101 tcttatgcaa ctaagtctgt gagacagact ctgaatctgg tctctttcca ggctgtgctg
     5161 gtccgcgagg tgatggtcag gggccccctc gctacctctg gggttgcgcc ctgtcaccgc
     5221 ggtgcctgga tgggtggtca gcgctggggg gagggcctcg tcggccttgg ccagcggttt
     5281 tctggacagg tcgcacctct gggagtgaca accagcctct gagagtctga gtctctggct
     5341 gaagcctcac tgcttctccc cctcgtgcct gaggccccag gttgggcctt ggaagggtct
     5401 gaaggaagga cgagccctgg cctgtctcct cggcccactt gcagggcgtc agctcctctg
     5461 cttccctgcc ctgagcaaat cgtgtgcatg ttagcgccac tcggggcaaa cggcagctgg
     5521 aatcccactt ccaagcccgt ggaccccacc aaggtgtgtg tgagctacca gcgtggaggg
     5581 gagccgctcg tctccgtctc caggtttctg gccctggagc aggcctctcc cacccagacg
     5641 ggcacagaca gaggggcttc ccagcttcca ggccaccgtg tggctccgaa gggaaaacct
     5701 cggggactca gcagctgggc cagtagggag tgggcccctg gttccatccg ctgggtgagc
     5761 gctggcgtcc tggcctccag caccacccct gactctggac atggcggcca gcggtcatag
     5821 gtggtcctgc ccctgtcggg gcccagttac aagtacagag cgtggtcccc attacggggt
     5881 tttaaggcag gtttcagcac ctcggagggt gtgtctcctg accttgcagg aaggcagctg
     5941 tggcggcaga acgaggccgc tgaaaggacc gggcatcggg gcccggggcc agcgcctgtc
     6001 ctgaccagcc gtgtggccgt ctgtgaaagg gggctgggtc ggtggtcctc aggacccctt
     6061 cttggcttga gagtctgtga tgatttgttg attcctgaga ccagaacatt tctcactcag
     6121 agtttttgct ctaacttcaa aaattctttt cttctcattc agatggttta agagtgtgtc
     6181 aaggtgggaa ggtgaattca gtctggaggg tagtggccgt ccctcctgat ggcctggtga
     6241 gaatgtgcaa acccgcgggg gtggaaacac ggcctctgga tgagtggttc tcacgggagg
     6301 ggcctggctc ctggcgtcca gacagcagac ccgctgtgtt tccccccacc ggccactcag
     6361 tctcagctct gccttaagca ccagagggcc ttcctcgagg aaaccccagc ctttagtttt
     6421 gtggggccat cagatctgga cctgggctgt cgcaagccga ggtccctccc ctgagcaggg
     6481 ctgcagggag tttacaccaa aggctgcagg accgagcagc ccccggggag gagggggagg
     6541 gccagggtct ggggcccgca tccctcagcc tccaaacaag ccgaagcttt gctcggcccc
     6601 cccggatggg tatgtagact gtgtcaagga tggccattga tcgcttgtgc tctgattaga
     6661 ttgggcagta gatcagcttc actgcggccc cgggaaccgt cattgtcaca gctgcttggg
     6721 agtgaggtgg gctcgggaga atctggaccg gcgtagcagg cgatgcagcc cctcctgtga
     6781 gggtcgtggt cggacgtcag gttgaggagg ggtcctggga gcccctcctt gggaagtaca
     6841 tctagagaca gacacggctg agggttggcc tgatgctgcc ttaggaggtt tcgagctttg
     6901 gggatcactc ttgcttctaa gcctgtgtgc gcacgcgtgt ttgctacatg gagatttcaa
     6961 aatgcaacct catcacccag tttcatccaa gtgtgttact ctgttaacgc atctcttttg
     7021 cttcccccct ccattcccca gaggacgtct ctctgagctt cttctccagt taatctgttc
     7081 atttcggact gggaatctgc cagagtgacc tcttctgtta cttctccaga ttttccccta
     7141 atgctcccag taaacttttc ctgggtggcc ctttaaggtg acctcacgcc gctcctgtct
     7201 ttgcaaaata aacacacctt tcaccctccc gcctactctc atcttcctcc ccattaattt
     7261 tttgcttttc tcacttggag ctggtggtgc tttagaggag agattgtcca cgaatcagcc
     7321 ccgactcctc tggttgcaaa gctgactggc tgtgccactt tcccctcgaa ggtgaggttt
     7381 ggccctagcc tgggcggggc ccatgggcag cctggcctcg tctgcacagc tagagactga
     7441 gtgagtcctc aggagggcac cgggcagtgt cggtgcgtct gggacagtgg ctcatctgct
     7501 gttgccttgc aggagcgggt tcaggaaagg cagggccccg ggggcctcgt tgaagcctcg
     7561 atggtctcac agaagcagga ctcggggtgg gggcaggtcc tggacgtggg gtgctaggct
     7621 ggcctctgag cctgacctgc gtcttctctc cataccgcgc tcttctgggg agggggctcg
     7681 gagggaaata cgaggggctc aagccaagac agcaggaggt gggccgcagg ggtgggggtt
     7741 cccttgcacc cctgaaaggc tggggctgct gtcaggctgg cccccaggtg ggggagggcg
     7801 agactgtccc catgttccgc catgggggac tctgactcag gctgcagcgc cgtggtcccc
     7861 cctcgtcccc ctccgttccc tctgcctctg tcttgatcgg tggaaagagc tgtgagaccc
     7921 tccctggggt ctccacaccc ccattccagg ggtagcattt tgtctctgtt caccttaccc
     7981 ccacctgact tcccctccaa gaaagcacca gagggaccgt tttaagtcgg ctccgttgta
     8041 aatacacgtg gtggggatag gggtttaggg agggacccag atgcgctttg tgagctgaat
     8101 gtatttttat gcaattctga gtggcctttc aactccgaga tgaatgactt tgttttactg
     8161 gttattatat agtgttatta agtattctgt gtttgaaagt ttgggaataa taatatccac
     8221 atctacatga tgcctgtaaa cgcaacagta tttataaata agtaaattgt gttttaactt
     8281 tgtgactgtg tccacagttt aggaaatggg gtttatagaa ccttacatag ggccagcctg
     8341 tggtagtttc acgtcaccat ccttgccact gggggcctct gtcccaggga tggccacagg
     8401 ggccaaggag gagcctgggg ggctcccagc ctcgggggtg ggcactggtg ctctcacccc
     8461 gggaggccgg ggccctgaga aggtggcttc cttgggttcc cggggtctct gcccgctgct
     8521 ccgtgcagta ctgtctctgc agggccaccg ctcagttcag ggcagccgga accactccat
     8581 ggctccagac tctaaaggca gctggtgggg gtcactggag gctaaggtgc tcggccgctg
     8641 gcaggggggc cagggtcggg ccctccgtcc gtcctagtgc accccgtctg gtttgctcag
     8701 accccattca cacccagcgg aggccccgtc accgagctgc aggtcacgga ggtgagggag
     8761 ggaggcgtct tctcccctgc ggccacccag ctgctggcct gcggcccaaa tcggaggcaa
     8821 aggatcaggt ctggagtgag ggctcctctg ggtgcccgct gggcccgggg aagtcagcgg
     8881 agactgggca tcgcctggag gcggtgaggc ccggcccttc cctcctgaag actccccagc
     8941 cctcgtgctg cgctggcctt gcccccctca atcccagcct ctgccaggcc agccttacag
     9001 gctctgcctt ctcgtccctg gagcttgccc ctgagccgga tgcccccctc cacctgtggc
     9061 agaggggctg cgggggcctc cctgaggaga tggcccccag atcgcagtga ggacgggtca
     9121 cccttccagg tctgggggcg gtgctgccct accgtctctt tccagaaaat cctgaagccc
     9181 cgtcctcggc ctcaggagtc acagacgtct gaagaagtcg gctgcggtga gctaaccgag
     9241 ggcttgtagg aaccgtccct cctctgaccc caccccaggg ccagatggtg gccgcgcccc
     9301 gagcccggct ctgctggcag cggggagccg ggggtctagt ccaccccagc ccccgggagg
     9361 cctcgcccca gcagctgccc tgagggccca cgcgcccacc gcccagctgg acctggcctg
     9421 gccttctggt tcctccagcc cctgagggaa gagccgtgtc cccagcctca ccccccgcgc
     9481 tgaccctggg agcggctcct gctccccagc ccagcaggaa caaccagaga ccgcccccag
     9541 cgtgctttca gctcattcct ttaataagga aatgccgctt attacaaaag aacatgttga
     9601 caagaaatga gacaagaaca gagtccacgg ggctgggggc ggggggggtg ctggacgtgg
     9661 gtccttcctg ggacggcgaa ggcaggggtc ctggtggggc tgcgcgtgcc agggggcctg
     9721 gggcctgccc accatgctct tgcagtcttc agaccccagg atttcagaag cagcggatcc
     9781 cgccctcgca gaggaggcgc cagggcagaa catctggctt ctcggaaggg gtcctagggt
     9841 cccgatggct gaggggggcc ctacgcgccc ccggctcccg ccaccccccc agcacaaggg
     9901 gcctggctcg tagcgcacag ggcccacctg cccacctgcg gcctcgtcgg tgctcctgtc
     9961 agaccccctg catttccccc tcctcccatc agggctggcc ggaggggtcg ctcccgtgcg
    10021 tggcgttcct ctgcaccggg gcctgcggct cctgtccctc ctggttcagc gagatggctc
    10081 gggacctggg gtcccccggc ccccttccac ctcccgccct cccatgggac acctggccgg
    10141 ggctgggctg gggcaccggt gagggtccct cgagccagag ccgcccagcc gcaggagaga
    10201 gcatgcgggg gagcttggcc taccgtgctc tccagccccc ggggtccctc cccactgcca
    10261 ccctcggccc cccaagcccc cagtgtcacg tgagcagggc tggttgtcca gctgggcggc
    10321 atcagggacc tgaccacaga ctcggccacc aacagctcct gagaaccctc gtcgcctgca
    10381 cggggtaccc ccgtggccca tccacccccc actacgtgga gtcagactgc aacaccaggt
    10441 gagggagccg ggccagcggg ggcatctgct ggggccccac tgggagacct ggacaccatc
    10501 cgtcctcgca acgtggggct gggagcagac gtgacgatgg ctcaaagaat gggtagaatc
    10561 ctggtgacct gtccctgccc cctgaggcta ggggtgaggg cgaggcagaa gtggtcgcag
    10621 gactggcctg ccagacagag catggacggc ggggcagcct gagtttcggt agactttggg
    10681 agtgaaaacg cacagcctgg aggcctccag aacccctcgt agccaacctt aattctgtcc
    10741 cactcaggac aggatcccga caccccagaa acaagcctgg tggcagtgaa ggtgctctgt
    10801 ggactggccc gggccctagg accagcccac agtcttcgtc aggtcccagc ttctcggcat
    10861 caagtgaaga atgacttcct gaggaccgag ggccacgagc aagcctgagc cccactgccc
    10921 agctgctgct cccggaggag acggcttctc accacctgcc cagccgggaa acgcagccgg
    10981 gcaggaacac acgcctgctc ctttctgaca gtgaaagaga cgtccctctg cctcaggtgc
    11041 ccgcggacgc cagggtggct agacggggtg ggaggtgccg ccacgtgtgc tgggaaagag
    11101 gcgcagctcc gggtctggga agccttgagt gttctgcgcc gaggagaggg ccagggcctg
    11161 cagccgcaga gacgagggcg gctgaggggg gccgggggcc ggatgctctc gcccaggctg
    11221 caggtttgga aggagactcg gcgcacactg gactaacgta tatatggctt tttatcgatg
    11281 ctggggacac gaggtgcgcg gggaacgagg acagtgaccg cggggcagaa cccggcccgt
    11341 gtcctccgcc acccctcgga atggctgccc tgcccctcgg gattcacagc aagtccctca
    11401 ggaatgctag gcggggcctc cccgcagggc ccctgggaaa gctcagccag ctgtccacta
    11461 ccctcccctc cttacctggg cctcagggga actaagaacc tgtaaacctt ccttttcaag
    11521 ccctctggct ctgaacggat accgtgtctt cagacagcgc tgctccactt tgattaaggg
    11581 aggagcacag gcgggagggt gagagatgcc agtgactgct ggctcccgtc ctagaaaggg
    11641 agccggcgtc tgggtctccc accgcaaggg caaaggcccg gcagtttcat ttgggccttt
    11701 ccgggaagcg ggtcttctgt ttctttgcgg tttgacatca cccgtcagca aggtgaggtc
    11761 gcgggacgga cagtccccgt tcgagtccag ccagtctagc ctgtagctca ggtctgtggt
    11821 gtcccgggaa gcccccggca gcaggaggag gtccacgccg gcagcgggct ttggtcctgg
    11881 ctctgcacag tccagtctcc ccgtctcgcc tcccaaacag ccactcccac gcagcgtggg
    11941 agctccccag tccgagcagg gttctaagcc ctctgctccc acacggcacc ctgtctgcgg
    12001 ccctccacga gcacggagga tgcgcacaca cgcacggatc cctggccgct ggttgccttc
    12061 cgtcaggagt caggtgctgc cattccgttg gtccggaacg ctcagaaaat gccaccactt
    12121 cctgccaaga gagcctccct cgaggccccc ggcagcgtgc tgagcgcctg ggagcagaag
    12181 ggcagacgca tcctcgcgag gtgacaaagg tcacacccga gaggccagca ggaggcacct
    12241 cgggacctca gagggagtga cgtccggctg gtggatcttc acgtaggggt ctgcgcggag
    12301 gcagcgggcg aggccctgag cacgcacccg gcccgccagc ttccaggcca gggtggccag
    12361 aggtgaagcc tctgggaccc cgccatggct gtggccgcct ggagctcggg cccacaggga
    12421 gagcagcgga aaggcagctc tcagcggggc tccccgcccc gccctgccct gaggacccaa
    12481 agccgctcag acagcctgtg tgtcccacgc atctgacgcc tgctatccag gtcgagggct
    12541 ctgggccgcg accggctggc aggtgccccg cgatggcggc cagaagccac gcacacacct
    12601 gaaaggcccc ccacgtccat cttcttgagg ttcttggcct ccaggatgca gacgagcgag
    12661 ctgctgtcct ccaagccctc ggcatccctt tccttgtgtt agcgtcacag ggcaaggacc
    12721 tcgtgactag caagaggggg ctcccgggcc cgagagctcg gccggcgcca tggcacagtc
    12781 gaggcttctc agaggcgggc ctcgggaccc aggctggccg cctcgcccac agcccggtca
    12841 gggtgctgac ccttcctccg ggcgacctga gccccgaggt ccctccactc ctcgatgggc
    12901 tgccccaggt ccacggtgtt catgggcacc tttacctccc cgatgatgtc gtgcttggag
    12961 aagcggtcaa agtcgtagat ggccatcacc agggtcttgc cccccagctc ctggaggaag
    13021 accttgacgt aagggtccga ggtgccgccc atgtccaggg cgggcagctc cgctgcctgc
    13081 aggacgccca cgccggggtg cccgccccgt ggagccctgg gggccgcccc gcgcacctgg
    13141 ttggcctgga agtcatagtc cagggagaac tgcagcttcc ccaggttctc cggctcctcg
    13201 ccctcgccct cgccctcgcc ctccgtcagg cccgtctcgg catcatcgtc gtcctggggg
    13261 gctgaggagg ggagggaggg tcaagggaga aaaggcgggg agcctgcccc cgtgcagacc
    13321 ccaacccaga gctggagggg ctccgtcggg ccctgcttcc cctcagcccc cagcccggcc
    13381 ctgtccctgc ggggccagca cggcccagat gccacgcggc ttcttgagtg gcggagcctc
    13441 cctgtgaccc cccaccccgc ccccagctca ggccaccacg tgggcagcac gtaccaggcg
    13501 tgcaggccgg gcgtccaggc caggcgagtc cacaggtggg aggagaaggg agagagtggt
    13561 aagaaaatcc tgcagctcag accagccgca tggcagggcc ggggccccca caggctcaca
    13621 cgcacacgca cgtccacgtg cgtgctcaca cacgctctca cacatgtgca cacgcagact
    13681 caaaggccac ggcccctggc tgacctcctg agatcagccc tccttcctcc ctccacactg
    13741 attccttgag caagaaattc ctcccagaac aaacatgggg aaagtgaggt gcccggggcc
    13801 tctgcaaact taaaaggaga cacaggtaca tcagggcgtc ttccaggctg ctccctgaaa
    13861 gatggggaga agagccacgt ctttgtggac gagagacgga cccacagggc cccacaatga
    13921 ggacatggtc cagcagccct gccggcagga aaccgggtca cacgatggtg gcttcccggt
    13981 gggcgggggt ctctcttccc agcattttgt cccaacggcc tcctttcggg tcagtcaagg
    14041 acagtccctg ctgacctgag cgagctcttc ccacctggag agcatcgagg ggcctctggt
    14101 cacccggccc cgcctacctg gccacccttc atgtccttca tgttcatggc gttcttggcg
    14161 cccttgccct tctccttctt gttcttcttc ttcttccagc agcacttctt gcagatgcag
    14221 aagcagcagg tgaggagcag aaggcccagg agcaccgcga tggcgcccag cgcccagggg
    14281 ggcactgccc acagggagac ggggtcagcg gcgctcgggc agccccgacc cctcgaggat
    14341 agaaagctgg gtcggggccc ggccccgctg ccgcaccccg cgttgtaaac ccacgttaag
    14401 ttgcatgctt cggtgccctc ccctttctgc caccccagca gggacagcct gtgacaggga
    14461 cagcagccag gcgcacacca cggggccctc atctgggctc tgctgagatc tgacggcttt
    14521 gacccttgga actgtggctc acacgaagga tgggagggtc ctcatcagac cccggtgggg
    14581 taggaaggcc cggccctcag gcgcagtcct gagagggctg agcctgcgcc aggaggccgg
    14641 gctcagaggg cccgcgggtc tggggaagtg cggggagggg cgggccgcgg gccggccggg
    14701 gctgctctcc gaggtgctga agcaccgcct ccctccagtg gggctgctcc ccgaatccgg
    14761 acctcgggtt tctccccaca gcctttacca ggaatccagg aagcagtagg gggttttatt
    14821 ttctatcttg caaaataaag cagttttaaa gta
//
LOCUS       XM_032653806           14751 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X4, mRNA.
ACCESSION   XM_032653806
VERSION     XM_032653806.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14751
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..14751
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..3084
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X1"
                     /protein_id="XP_032509697.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLEL
                     GGSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQE
                     AQLELADVKSKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELK
                     SDNQRLKDENGALIRVISKLSK"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2776..3081
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 catgaacgac tttctaggtt ggaattggga ggcagtgacg ccagcagcga gcgggcctcg
     2701 gccagagccc gccgggaggc ccgcgaggcc cgcctggcca ccctgagcag ccgcgcgggg
     2761 gaagacagca gcagggacta cagaaagctc tacgagagcg ccctgaccga aaaccagaaa
     2821 ctgaagacaa aacttcagga ggcccagctc gagctggcag acgtgaaatc caagcttgag
     2881 aagatggccc agcagaaaca agacaagacc gccgaccggt cgtcggtgct ggagatggag
     2941 aagcgggaga ggcgagcctt ggagcggaag atgtcggaga tggaggagga gatgaaggtc
     3001 ctgacagaac tgaaatccga caaccagagg ctgaaggacg agaatggcgc cctcatcagg
     3061 gtcatcagca agctgtccaa gtaggccagg cgctggcttc ccgggacggc gctggccccg
     3121 cctctccccc gccggcgccc accggccaag aggagccacg aggacctttc tctggccgtc
     3181 atccagttgc cacctctgca ccctccgtgt cccctcctcc ggcccccgcc gctggggttc
     3241 agacagtttc catcgaagca cgactgcgat ccctcaaccg atagagccat ctggtggagg
     3301 cctgggggtc gccaggccag ccgtggaccc ggcctccggt tgccgggcca ctggtccacg
     3361 tagcacttgg tccaggcccc agccctgctg ccaccgccat gcgctctgat gtgggacaca
     3421 cgtggggagg tctctggagc tgccgccact agatccaagt tgacagtgac tccacgtcgg
     3481 ggcccctgct tgtccttgcc tctcaggaac tgacttttct ctaactcccg ccggtggtgg
     3541 tggaattttt tctaccagca acccagtggc acctgactgg tcttaacgcc cgttccctcc
     3601 gtgtctggcc ctctccccag ggctcaggtg accgggcttg cctcttctct ttctgccctt
     3661 ttactttcct tcctccgtcc gccccgcggc gcgtaccccg ggaggtgggc gctgggacag
     3721 agcaccgacc ccagcggtgt gcccgggcag tggcaccgcc ggcctctccc cggccaggcc
     3781 gggctcagct ccccaccgtc ctccccacgc agcgtttctc tgctagaaca cccgcctgcc
     3841 ccacctccct ttgacctggt ctcctctcct gaagagaagt gatgccgctg tgaggaggcg
     3901 tgggggcgtc tgaggccccc cccttcatgc cttgtgctgt gagcgtggtg ggcttgatgg
     3961 catctggggc gtgtccaggg gagagacgat tgtttgttcg gaagccagca ggaggaacga
     4021 gtctggactc ggagtggcga gacccggtgg ccaaggctgt gtcccaggga ccccaccccg
     4081 ctgtcaggga gcctctggcg gctgcgcctt gatcgctcga aagctgggcg gcttggatga
     4141 gagttgaggt cttcctgagg gtccccctgt aacgtgacag ccctgccgta cctgcggctg
     4201 gggaccccca aggtgctgac gctcccctgg gcctggaagt cggtccccac gcgccctgct
     4261 tttcccacct gacccgtctt ggctatcctc ctctggacga aaacctggac aggtggctcc
     4321 cttggttcag cacagaatta ggtcatgagt tcttgatgat gccccagcat taacacttaa
     4381 gtgtttgctt tttgtaggcg ctttatccct cggctggttt gagtgtgcag gtcgctttgg
     4441 ggttgccgga gacatttagt gtgtagcggt ccgttctcaa catacgctac ctctgtctag
     4501 tttctctttc tttccagccc cttccatggc cctcagaaac gtcacatgct ctttaaccca
     4561 gagccatgat caaggtccca gttcgggata ggagatttgt ctcgtggggc aaaacccctt
     4621 tctcagagtg tgcaaaatct tccatgtccg gccatttcct gcgaggagcg acgcctgggc
     4681 acgggtgatt tgtgttgtcg gggccggggg tgggttgcgt ggggggatgc tgagagcgaa
     4741 gtttcatatc ttccactgta gcgtttcctt tgttctgggg gaggggagcg ggcacgaggc
     4801 cttggccttg accctgactc tccggcacac cctgggtgct gggccaggac tggaaaagga
     4861 aactgaatta ttaggacgtc acctggactc tcttgcatca ggcagaccag gcagaggggc
     4921 cgcagcacgc cctccgctcc gtctgtgcct ttcgggggcg cgggcggctc tcggaacccg
     4981 gtcgggctgt gtcccgcgcc tccctccagc ccttctgtgt caggcctctc cactcaggaa
     5041 gccaggctct gtggctagag cccgtggtgt ggaccagccc gtgatctcag gcgctctctc
     5101 tcttatgcaa ctaagtctgt gagacagact ctgaatctgg tctctttcca ggctgtgctg
     5161 gtccgcgagg tgatggtcag gggccccctc gctacctctg gggttgcgcc ctgtcaccgc
     5221 ggtgcctgga tgggtggtca gcgctggggg gagggcctcg tcggccttgg ccagcggttt
     5281 tctggacagg tcgcacctct gggagtgaca accagcctct gagagtctga gtctctggct
     5341 gaagcctcac tgcttctccc cctcgtgcct gaggccccag gttgggcctt ggaagggtct
     5401 gaaggaagga cgagccctgg cctgtctcct cggcccactt gcagggcgtc agctcctctg
     5461 cttccctgcc ctgagcaaat cgtgtgcatg ttagcgccac tcggggcaaa cggcagctgg
     5521 aatcccactt ccaagcccgt ggaccccacc aaggtgtgtg tgagctacca gcgtggaggg
     5581 gagccgctcg tctccgtctc caggtttctg gccctggagc aggcctctcc cacccagacg
     5641 ggcacagaca gaggggcttc ccagcttcca ggccaccgtg tggctccgaa gggaaaacct
     5701 cggggactca gcagctgggc cagtagggag tgggcccctg gttccatccg ctgggtgagc
     5761 gctggcgtcc tggcctccag caccacccct gactctggac atggcggcca gcggtcatag
     5821 gtggtcctgc ccctgtcggg gcccagttac aagtacagag cgtggtcccc attacggggt
     5881 tttaaggcag gtttcagcac ctcggagggt gtgtctcctg accttgcagg aaggcagctg
     5941 tggcggcaga acgaggccgc tgaaaggacc gggcatcggg gcccggggcc agcgcctgtc
     6001 ctgaccagcc gtgtggccgt ctgtgaaagg gggctgggtc ggtggtcctc aggacccctt
     6061 cttggcttga gagtctgtga tgatttgttg attcctgaga ccagaacatt tctcactcag
     6121 agtttttgct ctaacttcaa aaattctttt cttctcattc agatggttta agagtgtgtc
     6181 aaggtgggaa ggtgaattca gtctggaggg tagtggccgt ccctcctgat ggcctggtga
     6241 gaatgtgcaa acccgcgggg gtggaaacac ggcctctgga tgagtggttc tcacgggagg
     6301 ggcctggctc ctggcgtcca gacagcagac ccgctgtgtt tccccccacc ggccactcag
     6361 tctcagctct gccttaagca ccagagggcc ttcctcgagg aaaccccagc ctttagtttt
     6421 gtggggccat cagatctgga cctgggctgt cgcaagccga ggtccctccc ctgagcaggg
     6481 ctgcagggag tttacaccaa aggctgcagg accgagcagc ccccggggag gagggggagg
     6541 gccagggtct ggggcccgca tccctcagcc tccaaacaag ccgaagcttt gctcggcccc
     6601 cccggatggg tatgtagact gtgtcaagga tggccattga tcgcttgtgc tctgattaga
     6661 ttgggcagta gatcagcttc actgcggccc cgggaaccgt cattgtcaca gctgcttggg
     6721 agtgaggtgg gctcgggaga atctggaccg gcgtagcagg cgatgcagcc cctcctgtga
     6781 gggtcgtggt cggacgtcag gttgaggagg ggtcctggga gcccctcctt gggaagtaca
     6841 tctagagaca gacacggctg agggttggcc tgatgctgcc ttaggaggtt tcgagctttg
     6901 gggatcactc ttgcttctaa gcctgtgtgc gcacgcgtgt ttgctacatg gagatttcaa
     6961 aatgcaacct catcacccag tttcatccaa gtgtgttact ctgttaacgc atctcttttg
     7021 cttcccccct ccattcccca gaggacgtct ctctgagctt cttctccagt taatctgttc
     7081 atttcggact gggaatctgc cagagtgacc tcttctgtta cttctccaga ttttccccta
     7141 atgctcccag taaacttttc ctgggtggcc ctttaaggtg acctcacgcc gctcctgtct
     7201 ttgcaaaata aacacacctt tcaccctccc gcctactctc atcttcctcc ccattaattt
     7261 tttgcttttc tcacttggag ctggtggtgc tttagaggag agattgtcca cgaatcagcc
     7321 ccgactcctc tggttgcaaa gctgactggc tgtgccactt tcccctcgaa ggtgaggttt
     7381 ggccctagcc tgggcggggc ccatgggcag cctggcctcg tctgcacagc tagagactga
     7441 gtgagtcctc aggagggcac cgggcagtgt cggtgcgtct gggacagtgg ctcatctgct
     7501 gttgccttgc aggagcgggt tcaggaaagg cagggccccg ggggcctcgt tgaagcctcg
     7561 atggtctcac agaagcagga ctcggggtgg gggcaggtcc tggacgtggg gtgctaggct
     7621 ggcctctgag cctgacctgc gtcttctctc cataccgcgc tcttctgggg agggggctcg
     7681 gagggaaata cgaggggctc aagccaagac agcaggaggt gggccgcagg ggtgggggtt
     7741 cccttgcacc cctgaaaggc tggggctgct gtcaggctgg cccccaggtg ggggagggcg
     7801 agactgtccc catgttccgc catgggggac tctgactcag gctgcagcgc cgtggtcccc
     7861 cctcgtcccc ctccgttccc tctgcctctg tcttgatcgg tggaaagagc tgtgagaccc
     7921 tccctggggt ctccacaccc ccattccagg ggtagcattt tgtctctgtt caccttaccc
     7981 ccacctgact tcccctccaa gaaagcacca gagggaccgt tttaagtcgg ctccgttgta
     8041 aatacacgtg gtggggatag gggtttaggg agggacccag atgcgctttg tgagctgaat
     8101 gtatttttat gcaattctga gtggcctttc aactccgaga tgaatgactt tgttttactg
     8161 gttattatat agtgttatta agtattctgt gtttgaaagt ttgggaataa taatatccac
     8221 atctacatga tgcctgtaaa cgcaacagta tttataaata agtaaattgt gttttaactt
     8281 tgtgactgtg tccacagttt aggaaatggg gtttatagaa ccttacatag ggccagcctg
     8341 tggtagtttc acgtcaccat ccttgccact gggggcctct gtcccaggga tggccacagg
     8401 ggccaaggag gagcctgggg ggctcccagc ctcgggggtg ggcactggtg ctctcacccc
     8461 gggaggccgg ggccctgaga aggtggcttc cttgggttcc cggggtctct gcccgctgct
     8521 ccgtgcagta ctgtctctgc agggccaccg ctcagttcag ggcagccgga accactccat
     8581 ggctccagac tctaaaggca gctggtgggg gtcactggag gctaaggtgc tcggccgctg
     8641 gcaggggggc cagggtcggg ccctccgtcc gtcctagtgc accccgtctg gtttgctcag
     8701 accccattca cacccagcgg aggccccgtc accgagctgc aggtcacgga ggtgagggag
     8761 ggaggcgtct tctcccctgc ggccacccag ctgctggcct gcggcccaaa tcggaggcaa
     8821 aggatcaggt ctggagtgag ggctcctctg ggtgcccgct gggcccgggg aagtcagcgg
     8881 agactgggca tcgcctggag gcggtgaggc ccggcccttc cctcctgaag actccccagc
     8941 cctcgtgctg cgctggcctt gcccccctca atcccagcct ctgccaggcc agccttacag
     9001 gctctgcctt ctcgtccctg gagcttgccc ctgagccgga tgcccccctc cacctgtggc
     9061 agaggggctg cgggggcctc cctgaggaga tggcccccag atcgcagtga ggacgggtca
     9121 cccttccagg tctgggggcg gtgctgccct accgtctctt tccagaaaat cctgaagccc
     9181 cgtcctcggc ctcaggagtc acagacgtct gaagaagtcg gctgcggtga gctaaccgag
     9241 ggcttgtagg aaccgtccct cctctgaccc caccccaggg ccagatggtg gccgcgcccc
     9301 gagcccggct ctgctggcag cggggagccg ggggtctagt ccaccccagc ccccgggagg
     9361 cctcgcccca gcagctgccc tgagggccca cgcgcccacc gcccagctgg acctggcctg
     9421 gccttctggt tcctccagcc cctgagggaa gagccgtgtc cccagcctca ccccccgcgc
     9481 tgaccctggg agcggctcct gctccccagc ccagcaggaa caaccagaga ccgcccccag
     9541 cgtgctttca gctcattcct ttaataagga aatgccgctt attacaaaag aacatgttga
     9601 caagaaatga gacaagaaca gagtccacgg ggctgggggc ggggggggtg ctggacgtgg
     9661 gtccttcctg ggacggcgaa ggcaggggtc ctggtggggc tgcgcgtgcc agggggcctg
     9721 gggcctgccc accatgctct tgcagtcttc agaccccagg atttcagaag cagcggatcc
     9781 cgccctcgca gaggaggcgc cagggcagaa catctggctt ctcggaaggg gtcctagggt
     9841 cccgatggct gaggggggcc ctacgcgccc ccggctcccg ccaccccccc agcacaaggg
     9901 gcctggctcg tagcgcacag ggcccacctg cccacctgcg gcctcgtcgg tgctcctgtc
     9961 agaccccctg catttccccc tcctcccatc agggctggcc ggaggggtcg ctcccgtgcg
    10021 tggcgttcct ctgcaccggg gcctgcggct cctgtccctc ctggttcagc gagatggctc
    10081 gggacctggg gtcccccggc ccccttccac ctcccgccct cccatgggac acctggccgg
    10141 ggctgggctg gggcaccggt gagggtccct cgagccagag ccgcccagcc gcaggagaga
    10201 gcatgcgggg gagcttggcc taccgtgctc tccagccccc ggggtccctc cccactgcca
    10261 ccctcggccc cccaagcccc cagtgtcacg tgagcagggc tggttgtcca gctgggcggc
    10321 atcagggacc tgaccacaga ctcggccacc aacagctcct gagaaccctc gtcgcctgca
    10381 cggggtaccc ccgtggccca tccacccccc actacgtgga gtcagactgc aacaccagct
    10441 caaagaatgg gtagaatcct ggtgacctgt ccctgccccc tgaggctagg ggtgagggcg
    10501 aggcagaagt ggtcgcagga ctggcctgcc agacagagca tggacggcgg ggcagcctga
    10561 gtttcggtag actttgggag tgaaaacgca cagcctggag gcctccagaa cccctcgtag
    10621 ccaaccttaa ttctgtccca ctcaggacag gatcccgaca ccccagaaac aagcctggtg
    10681 gcagtgaagg tgctctgtgg actggcccgg gccctaggac cagcccacag tcttcgtcag
    10741 gtcccagctt ctcggcatca agtgaagaat gacttcctga ggaccgaggg ccacgagcaa
    10801 gcctgagccc cactgcccag ctgctgctcc cggaggagac ggcttctcac cacctgccca
    10861 gccgggaaac gcagccgggc aggaacacac gcctgctcct ttctgacagt gaaagagacg
    10921 tccctctgcc tcaggtgccc gcggacgcca gggtggctag acggggtggg aggtgccgcc
    10981 acgtgtgctg ggaaagaggc gcagctccgg gtctgggaag ccttgagtgt tctgcgccga
    11041 ggagagggcc agggcctgca gccgcagaga cgagggcggc tgaggggggc cgggggccgg
    11101 atgctctcgc ccaggctgca ggtttggaag gagactcggc gcacactgga ctaacgtata
    11161 tatggctttt tatcgatgct ggggacacga ggtgcgcggg gaacgaggac agtgaccgcg
    11221 gggcagaacc cggcccgtgt cctccgccac ccctcggaat ggctgccctg cccctcggga
    11281 ttcacagcaa gtccctcagg aatgctaggc ggggcctccc cgcagggccc ctgggaaagc
    11341 tcagccagct gtccactacc ctcccctcct tacctgggcc tcaggggaac taagaacctg
    11401 taaaccttcc ttttcaagcc ctctggctct gaacggatac cgtgtcttca gacagcgctg
    11461 ctccactttg attaagggag gagcacaggc gggagggtga gagatgccag tgactgctgg
    11521 ctcccgtcct agaaagggag ccggcgtctg ggtctcccac cgcaagggca aaggcccggc
    11581 agtttcattt gggcctttcc gggaagcggg tcttctgttt ctttgcggtt tgacatcacc
    11641 cgtcagcaag gtgaggtcgc gggacggaca gtccccgttc gagtccagcc agtctagcct
    11701 gtagctcagg tctgtggtgt cccgggaagc ccccggcagc aggaggaggt ccacgccggc
    11761 agcgggcttt ggtcctggct ctgcacagtc cagtctcccc gtctcgcctc ccaaacagcc
    11821 actcccacgc agcgtgggag ctccccagtc cgagcagggt tctaagccct ctgctcccac
    11881 acggcaccct gtctgcggcc ctccacgagc acggaggatg cgcacacacg cacggatccc
    11941 tggccgctgg ttgccttccg tcaggagtca ggtgctgcca ttccgttggt ccggaacgct
    12001 cagaaaatgc caccacttcc tgccaagaga gcctccctcg aggcccccgg cagcgtgctg
    12061 agcgcctggg agcagaaggg cagacgcatc ctcgcgaggt gacaaaggtc acacccgaga
    12121 ggccagcagg aggcacctcg ggacctcaga gggagtgacg tccggctggt ggatcttcac
    12181 gtaggggtct gcgcggaggc agcgggcgag gccctgagca cgcacccggc ccgccagctt
    12241 ccaggccagg gtggccagag gtgaagcctc tgggaccccg ccatggctgt ggccgcctgg
    12301 agctcgggcc cacagggaga gcagcggaaa ggcagctctc agcggggctc cccgccccgc
    12361 cctgccctga ggacccaaag ccgctcagac agcctgtgtg tcccacgcat ctgacgcctg
    12421 ctatccaggt cgagggctct gggccgcgac cggctggcag gtgccccgcg atggcggcca
    12481 gaagccacgc acacacctga aaggcccccc acgtccatct tcttgaggtt cttggcctcc
    12541 aggatgcaga cgagcgagct gctgtcctcc aagccctcgg catccctttc cttgtgttag
    12601 cgtcacaggg caaggacctc gtgactagca agagggggct cccgggcccg agagctcggc
    12661 cggcgccatg gcacagtcga ggcttctcag aggcgggcct cgggacccag gctggccgcc
    12721 tcgcccacag cccggtcagg gtgctgaccc ttcctccggg cgacctgagc cccgaggtcc
    12781 ctccactcct cgatgggctg ccccaggtcc acggtgttca tgggcacctt tacctccccg
    12841 atgatgtcgt gcttggagaa gcggtcaaag tcgtagatgg ccatcaccag ggtcttgccc
    12901 cccagctcct ggaggaagac cttgacgtaa gggtccgagg tgccgcccat gtccagggcg
    12961 ggcagctccg ctgcctgcag gacgcccacg ccggggtgcc cgccccgtgg agccctgggg
    13021 gccgccccgc gcacctggtt ggcctggaag tcatagtcca gggagaactg cagcttcccc
    13081 aggttctccg gctcctcgcc ctcgccctcg ccctcgccct ccgtcaggcc cgtctcggca
    13141 tcatcgtcgt cctggggggc tgaggagggg agggagggtc aagggagaaa aggcggggag
    13201 cctgcccccg tgcagacccc aacccagagc tggaggggct ccgtcgggcc ctgcttcccc
    13261 tcagccccca gcccggccct gtccctgcgg ggccagcacg gcccagatgc cacgcggctt
    13321 cttgagtggc ggagcctccc tgtgaccccc caccccgccc ccagctcagg ccaccacgtg
    13381 ggcagcacgt accaggcgtg caggccgggc gtccaggcca ggcgagtcca caggtgggag
    13441 gagaagggag agagtggtaa gaaaatcctg cagctcagac cagccgcatg gcagggccgg
    13501 ggcccccaca ggctcacacg cacacgcacg tccacgtgcg tgctcacaca cgctctcaca
    13561 catgtgcaca cgcagactca aaggccacgg cccctggctg acctcctgag atcagccctc
    13621 cttcctccct ccacactgat tccttgagca agaaattcct cccagaacaa acatggggaa
    13681 agtgaggtgc ccggggcctc tgcaaactta aaaggagaca caggtacatc agggcgtctt
    13741 ccaggctgct ccctgaaaga tggggagaag agccacgtct ttgtggacga gagacggacc
    13801 cacagggccc cacaatgagg acatggtcca gcagccctgc cggcaggaaa ccgggtcaca
    13861 cgatggtggc ttcccggtgg gcgggggtct ctcttcccag cattttgtcc caacggcctc
    13921 ctttcgggtc agtcaaggac agtccctgct gacctgagcg agctcttccc acctggagag
    13981 catcgagggg cctctggtca cccggccccg cctacctggc cacccttcat gtccttcatg
    14041 ttcatggcgt tcttggcgcc cttgcccttc tccttcttgt tcttcttctt cttccagcag
    14101 cacttcttgc agatgcagaa gcagcaggtg aggagcagaa ggcccaggag caccgcgatg
    14161 gcgcccagcg cccagggggg cactgcccac agggagacgg ggtcagcggc gctcgggcag
    14221 ccccgacccc tcgaggatag aaagctgggt cggggcccgg ccccgctgcc gcaccccgcg
    14281 ttgtaaaccc acgttaagtt gcatgcttcg gtgccctccc ctttctgcca ccccagcagg
    14341 gacagcctgt gacagggaca gcagccaggc gcacaccacg gggccctcat ctgggctctg
    14401 ctgagatctg acggctttga cccttggaac tgtggctcac acgaaggatg ggagggtcct
    14461 catcagaccc cggtggggta ggaaggcccg gccctcaggc gcagtcctga gagggctgag
    14521 cctgcgccag gaggccgggc tcagagggcc cgcgggtctg gggaagtgcg gggaggggcg
    14581 ggccgcgggc cggccggggc tgctctccga ggtgctgaag caccgcctcc ctccagtggg
    14641 gctgctcccc gaatccggac ctcgggtttc tccccacagc ctttaccagg aatccaggaa
    14701 gcagtagggg gttttatttt ctatcttgca aaataaagca gttttaaagt a
//
LOCUS       XM_032653807           15326 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X5, mRNA.
ACCESSION   XM_032653807
VERSION     XM_032653807.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15326
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15326
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..3084
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X1"
                     /protein_id="XP_032509698.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLEL
                     GGSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQE
                     AQLELADVKSKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELK
                     SDNQRLKDENGALIRVISKLSK"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2776..3081
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 catgaacgac tttctaggtt ggaattggga ggcagtgacg ccagcagcga gcgggcctcg
     2701 gccagagccc gccgggaggc ccgcgaggcc cgcctggcca ccctgagcag ccgcgcgggg
     2761 gaagacagca gcagggacta cagaaagctc tacgagagcg ccctgaccga aaaccagaaa
     2821 ctgaagacaa aacttcagga ggcccagctc gagctggcag acgtgaaatc caagcttgag
     2881 aagatggccc agcagaaaca agacaagacc gccgaccggt cgtcggtgct ggagatggag
     2941 aagcgggaga ggcgagcctt ggagcggaag atgtcggaga tggaggagga gatgaaggtc
     3001 ctgacagaac tgaaatccga caaccagagg ctgaaggacg agaatggcgc cctcatcagg
     3061 gtcatcagca agctgtccaa gtaggccagg cgctggcttc ccgggacggc gctggccccg
     3121 cctctccccc gccggcgccc accggccaag aggagccacg aggacctttc tctggccgtc
     3181 atccagttgc cacctctgca ccctccgtgt cccctcctcc ggcccccgcc gctggggttc
     3241 agacagtttc catcgaagca cgactgcgat ccctcaaccg atagagccat ctggtggagg
     3301 cctgggggtc gccaggccag ccgtggaccc ggcctccggt tgccgggcca ctggtccacg
     3361 tagcacttgg tccaggcccc agccctgctg ccaccgccat gcgctctgat gtgggacaca
     3421 cgtggggagg tctctggagc tgccgccact agatccaagt tgacagtgac tccacgtcgg
     3481 ggcccctgct tgtccttgcc tctcaggaac tgacttttct ctaactcccg ccggtggtgg
     3541 tggaattttt tctaccagca acccagtggc acctgactgg tcttaacgcc cgttccctcc
     3601 gtgtctggcc ctctccccag ggctcaggtg accgggcttg cctcttctct ttctgccctt
     3661 ttactttcct tcctccgtcc gccccgcggc gcgtaccccg ggaggtgggc gctgggacag
     3721 agcaccgacc ccagcggtgt gcccgggcag tggcaccgcc ggcctctccc cggccaggcc
     3781 gggctcagct ccccaccgtc ctccccacgc agcgtttctc tgctagaaca cccgcctgcc
     3841 ccacctccct ttgacctggt ctcctctcct gaagagaagt gatgccgctg tgaggaggcg
     3901 tgggggcgtc tgaggccccc cccttcatgc cttgtgctgt gagcgtggtg ggcttgatgg
     3961 catctggggc gtgtccaggg gagagacgat tgtttgttcg gaagccagca ggaggaacga
     4021 gtctggactc ggagtggcga gacccggtgg ccaaggctgt gtcccaggga ccccaccccg
     4081 ctgtcaggga gcctctggcg gctgcgcctt gatcgctcga aagctgggcg gcttggatga
     4141 gagttgaggt cttcctgagg gtccccctgt aacgtgacag ccctgccgta cctgcggctg
     4201 gggaccccca aggtgctgac gctcccctgg gcctggaagt cggtccccac gcgccctgct
     4261 tttcccacct gacccgtctt ggctatcctc ctctggacga aaacctggac aggtggctcc
     4321 cttggttcag cacagaatta ggtcatgagt tcttgatgat gccccagcat taacacttaa
     4381 gtgtttgctt tttgtaggcg ctttatccct cggctggttt gagtgtgcag gtcgctttgg
     4441 ggttgccgga gacatttagt gtgtagcggt ccgttctcaa catacgctac ctctgtctag
     4501 tttctctttc tttccagccc cttccatggc cctcagaaac gtcacatgct ctttaaccca
     4561 gagccatgat caaggtccca gttcgggata ggagatttgt ctcgtggggc aaaacccctt
     4621 tctcagagtg tgcaaaatct tccatgtccg gccatttcct gcgaggagcg acgcctgggc
     4681 acgggtgatt tgtgttgtcg gggccggggg tgggttgcgt ggggggatgc tgagagcgaa
     4741 gtttcatatc ttccactgta gcgtttcctt tgttctgggg gaggggagcg ggcacgaggc
     4801 cttggccttg accctgactc tccggcacac cctgggtgct gggccaggac tggaaaagga
     4861 aactgaatta ttaggacgtc acctggactc tcttgcatca ggcagaccag gcagaggggc
     4921 cgcagcacgc cctccgctcc gtctgtgcct ttcgggggcg cgggcggctc tcggaacccg
     4981 gtcgggctgt gtcccgcgcc tccctccagc ccttctgtgt caggcctctc cactcaggaa
     5041 gccaggctct gtggctagag cccgtggtgt ggaccagccc gtgatctcag gcgctctctc
     5101 tcttatgcaa ctaagtctgt gagacagact ctgaatctgg tctctttcca ggctgtgctg
     5161 gtccgcgagg tgatggtcag gggccccctc gctacctctg gggttgcgcc ctgtcaccgc
     5221 ggtgcctgga tgggtggtca gcgctggggg gagggcctcg tcggccttgg ccagcggttt
     5281 tctggacagg tcgcacctct gggagtgaca accagcctct gagagtctga gtctctggct
     5341 gaagcctcac tgcttctccc cctcgtgcct gaggccccag gttgggcctt ggaagggtct
     5401 gaaggaagga cgagccctgg cctgtctcct cggcccactt gcagggcgtc agctcctctg
     5461 cttccctgcc ctgagcaaat cgtgtgcatg ttagcgccac tcggggcaaa cggcagctgg
     5521 aatcccactt ccaagcccgt ggaccccacc aaggtgtgtg tgagctacca gcgtggaggg
     5581 gagccgctcg tctccgtctc caggtttctg gccctggagc aggcctctcc cacccagacg
     5641 ggcacagaca gaggggcttc ccagcttcca ggccaccgtg tggctccgaa gggaaaacct
     5701 cggggactca gcagctgggc cagtagggag tgggcccctg gttccatccg ctgggtgagc
     5761 gctggcgtcc tggcctccag caccacccct gactctggac atggcggcca gcggtcatag
     5821 gtggtcctgc ccctgtcggg gcccagttac aagtacagag cgtggtcccc attacggggt
     5881 tttaaggcag gtttcagcac ctcggagggt gtgtctcctg accttgcagg aaggcagctg
     5941 tggcggcaga acgaggccgc tgaaaggacc gggcatcggg gcccggggcc agcgcctgtc
     6001 ctgaccagcc gtgtggccgt ctgtgaaagg gggctgggtc ggtggtcctc aggacccctt
     6061 cttggcttga gagtctgtga tgatttgttg attcctgaga ccagaacatt tctcactcag
     6121 agtttttgct ctaacttcaa aaattctttt cttctcattc agatggttta agagtgtgtc
     6181 aaggtgggaa ggtgaattca gtctggaggg tagtggccgt ccctcctgat ggcctggtga
     6241 gaatgtgcaa acccgcgggg gtggaaacac ggcctctgga tgagtggttc tcacgggagg
     6301 ggcctggctc ctggcgtcca gacagcagac ccgctgtgtt tccccccacc ggccactcag
     6361 tctcagctct gccttaagca ccagagggcc ttcctcgagg aaaccccagc ctttagtttt
     6421 gtggggccat cagatctgga cctgggctgt cgcaagccga ggtccctccc ctgagcaggg
     6481 ctgcagggag tttacaccaa aggctgcagg accgagcagc ccccggggag gagggggagg
     6541 gccagggtct ggggcccgca tccctcagcc tccaaacaag ccgaagcttt gctcggcccc
     6601 cccggatggg tatgtagact gtgtcaagga tggccattga tcgcttgtgc tctgattaga
     6661 ttgggcagta gatcagcttc actgcggccc cgggaaccgt cattgtcaca gctgcttggg
     6721 agtgaggtgg gctcgggaga atctggaccg gcgtagcagg cgatgcagcc cctcctgtga
     6781 gggtcgtggt cggacgtcag gttgaggagg ggtcctggga gcccctcctt gggaagtaca
     6841 tctagagaca gacacggctg agggttggcc tgatgctgcc ttaggaggtt tcgagctttg
     6901 gggatcactc ttgcttctaa gcctgtgtgc gcacgcgtgt ttgctacatg gagatttcaa
     6961 aatgcaacct catcacccag tttcatccaa gtgtgttact ctgttaacgc atctcttttg
     7021 cttcccccct ccattcccca gaggacgtct ctctgagctt cttctccagt taatctgttc
     7081 atttcggact gggaatctgc cagagtgacc tcttctgtta cttctccaga ttttccccta
     7141 atgctcccag taaacttttc ctgggtggcc ctttaaggtg acctcacgcc gctcctgtct
     7201 ttgcaaaata aacacacctt tcaccctccc gcctactctc atcttcctcc ccattaattt
     7261 tttgcttttc tcacttggag ctggtggtgc tttagaggag agattgtcca cgaatcagcc
     7321 ccgactcctc tggttgcaaa gctgactggc tgtgccactt tcccctcgaa ggtgaggttt
     7381 ggccctagcc tgggcggggc ccatgggcag cctggcctcg tctgcacagc tagagactga
     7441 gtgagtcctc aggagggcac cgggcagtgt cggtgcgtct gggacagtgg ctcatctgct
     7501 gttgccttgc aggagcgggt tcaggaaagg cagggccccg ggggcctcgt tgaagcctcg
     7561 atggtctcac agaagcagga ctcggggtgg gggcaggtcc tggacgtggg gtgctaggct
     7621 ggcctctgag cctgacctgc gtcttctctc cataccgcgc tcttctgggg agggggctcg
     7681 gagggaaata cgaggggctc aagccaagac agcaggaggt gggccgcagg ggtgggggtt
     7741 cccttgcacc cctgaaaggc tggggctgct gtcaggctgg cccccaggtg ggggagggcg
     7801 agactgtccc catgttccgc catgggggac tctgactcag gctgcagcgc cgtggtcccc
     7861 cctcgtcccc ctccgttccc tctgcctctg tcttgatcgg tggaaagagc tgtgagaccc
     7921 tccctggggt ctccacaccc ccattccagg ggtagcattt tgtctctgtt caccttaccc
     7981 ccacctgact tcccctccaa gaaagcacca gagggaccgt tttaagtcgg ctccgttgta
     8041 aatacacgtg gtggggatag gggtttaggg agggacccag atgcgctttg tgagctgaat
     8101 gtatttttat gcaattctga gtggcctttc aactccgaga tgaatgactt tgttttactg
     8161 gttattatat agtgttatta agtattctgt gtttgaaagt ttgggaataa taatatccac
     8221 atctacatga tgcctgtaaa cgcaacagta tttataaata agtaaattgt gttttaactt
     8281 tgtgactgtg tccacagttt aggaaatggg gtttatagaa ccttacatag ggccagcctg
     8341 tggtagtttc acgtcaccat ccttgccact gggggcctct gtcccaggga tggccacagg
     8401 ggccaaggag gagcctgggg ggctcccagc ctcgggggtg ggcactggtg ctctcacccc
     8461 gggaggccgg ggccctgaga aggtggcttc cttgggttcc cggggtctct gcccgctgct
     8521 ccgtgcagta ctgtctctgc agggccaccg ctcagttcag ggcagccgga accactccat
     8581 ggctccagac tctaaaggca gctggtgggg gtcactggag gctaaggtgc tcggccgctg
     8641 gcaggggggc cagggtcggg ccctccgtcc gtcctagtgc accccgtctg gtttgctcag
     8701 accccattca cacccagcgg aggccccgtc accgagctgc aggtcacgga ggtgagggag
     8761 ggaggcgtct tctcccctgc ggccacccag ctgctggcct gcggcccaaa tcggaggcaa
     8821 aggatcaggt ctggagtgag ggctcctctg ggtgcccgct gggcccgggg aagtcagcgg
     8881 agactgggca tcgcctggag gcggtgaggc ccggcccttc cctcctgaag actccccagc
     8941 cctcgtgctg cgctggcctt gcccccctca atcccagcct ctgccaggcc agccttacag
     9001 gctctgcctt ctcgtccctg gagcttgccc ctgagccgga tgcccccctc cacctgtggc
     9061 agaggggctg cgggggcctc cctgaggaga tggcccccag atcgcagtga ggacgggtca
     9121 cccttccagg tctgggggcg gtgctgccct accgtctctt tccagaaaat cctgaagccc
     9181 cgtcctcggc ctcaggagtc acagacgtct gaagaagtcg gctgcggtga gctaaccgag
     9241 ggcttgtagg aaccgtccct cctctgaccc caccccaggg ccagatggtg gccgcgcccc
     9301 gagcccggct ctgctggcag cggggagccg ggggtctagt ccaccccagc ccccgggagg
     9361 cctcgcccca gcagctgccc tgagggccca cgcgcccacc gcccagctgg acctggcctg
     9421 gccttctggt tcctccagcc cctgagggaa gagccgtgtc cccagcctca ccccccgcgc
     9481 tgaccctggg agcggctcct gctccccagc ccagcaggaa caaccagaga ccgcccccag
     9541 cgtgctttca gctcattcct ttaataagga aatgccgctt attacaaaag aacatgttga
     9601 caagaaatga gacaagaaca gagtccacgg ggctgggggc ggggggggtg ctggacgtgg
     9661 gtccttcctg ggacggcgaa ggcaggggtc ctggtggggc tgcgcgtgcc agggggcctg
     9721 gggcctgccc accatgctct tgcagtcttc agaccccagg atttcagaag cagcggatcc
     9781 cgccctcgca gaggaggcgc cagggcagaa catctggctt ctcggaaggg gtcctagggt
     9841 cccgatggct gaggggggcc ctacgcgccc ccggctcccg ccaccccccc agcacaaggg
     9901 gcctggctcg tagcgcacag ggcccacctg cccacctgcg gcctcgtcgg tgctcctgtc
     9961 agaccccctg catttccccc tcctcccatc agggctggcc ggaggggtcg ctcccgtgcg
    10021 tggcgttcct ctgcaccggg gcctgcggct cctgtccctc ctggttcagc gagatggctc
    10081 gggacctggg gtcccccggc ccccttccac ctcccgccct cccatgggac acctggccgg
    10141 ggctgggctg gggcaccggt gagggtccct cgagccagag ccgcccagcc gcaggagaga
    10201 gcatgcgggg gagcttggcc taccgtgctc tccagccccc ggggtccctc cccactgcca
    10261 ccctcggccc cccaagcccc cagtgtcacg tgagcagggc tggttgtcca gctgggcggc
    10321 atcagggacc tgaccacaga ctcggccacc aacagctcct gagaaccctc gtcgcctgca
    10381 cggggtaccc ccgtggccca tccacccccc actacgtgga gtcagactgc aacaccaggt
    10441 gagggagccg ggccagcggg ggcatctgct ggggccccac tgggagacct ggacaccatc
    10501 cgtcctcgca acgtggggct gggagcagac gtgacgatgg gtgagccctt cacgagtgtc
    10561 ctgaggggag ccctgggagg atggcttttc agtgaattca gagagtggga ggagggggca
    10621 caccacacac acacacacac aggacacagg gctggacgca gggcgccgag ggtcagctct
    10681 gcccacggtc ccctggtcag accagggcca gaggccaact ccccccggcg cgtggcaggg
    10741 caggggggcc gggagggcga ggggaaggac tttacacaca aagtcgaagg agcagctcaa
    10801 gttgtgtaaa acggggctgg gggcactcag cattgccatg cggttattta cagagttgag
    10861 acatgcgtct tggtgggacg agactggggt cgtgttcaca ggtgaccacc ctctccgtga
    10921 ggctcaaatg gcttcagaag gttctcgttt tgttgtcgct taaaagatat attcttgtgt
    10981 cttcaagtca cagtgtcccc cttcccaata ttgcagctca aagaatgggt agaatcctgg
    11041 tgacctgtcc ctgccccctg aggctagggg tgagggcgag gcagaagtgg tcgcaggact
    11101 ggcctgccag acagagcatg gacggcgggg cagcctgagt ttcggacttt gggagtgaaa
    11161 acgcacagcc tggaggcctc cagaacccct cgtagccaac cttaattctg tcccactcag
    11221 gacaggatcc cgacacccca gaaacaagcc tggtggcagt gaaggtgctc tgtggactgg
    11281 cccgggccct aggaccagcc cacagtcttc gtcaggtccc agcttctcgg catcaagtga
    11341 agaatgactt cctgaggacc gagggccacg agcaagcctg agccccactg cccagctgct
    11401 gctcccggag gagacggctt ctcaccacct gcccagccgg gaaacgcagc cgggcaggaa
    11461 cacacgcctg ctcctttctg acagtgaaag agacgtccct ctgcctcagg tgcccgcgga
    11521 cgccagggtg gctagacggg gtgggaggtg ccgccacgtg tgctgggaaa gaggcgcagc
    11581 tccgggtctg ggaagccttg agtgttctgc gccgaggaga gggccagggc ctgcagccgc
    11641 agagacgagg gcggctgagg ggggccgggg gccggatgct ctcgcccagg ctgcaggttt
    11701 ggaaggagac tcggcgcaca ctggactaac gtatatatgg ctttttatcg atgctgggga
    11761 cacgaggtgc gcggggaacg aggacagtga ccgcggggca gaacccggcc cgtgtcctcc
    11821 gccacccctc ggaatggctg ccctgcccct cgggattcac agcaagtccc tcaggaatgc
    11881 taggcggggc ctccccgcag ggcccctggg aaagctcagc cagctgtcca ctaccctccc
    11941 ctccttacct gggcctcagg ggaactaaga acctgtaaac cttccttttc aagccctctg
    12001 gctctgaacg gataccgtgt cttcagacag cgctgctcca ctttgattaa gggaggagca
    12061 caggcgggag ggtgagagat gccagtgact gctggctccc gtcctagaaa gggagccggc
    12121 gtctgggtct cccaccgcaa gggcaaaggc ccggcagttt catttgggcc tttccgggaa
    12181 gcgggtcttc tgtttctttg cggtttgaca tcacccgtca gcaaggtgag gtcgcgggac
    12241 ggacagtccc cgttcgagtc cagccagtct agcctgtagc tcaggtctgt ggtgtcccgg
    12301 gaagcccccg gcagcaggag gaggtccacg ccggcagcgg gctttggtcc tggctctgca
    12361 cagtccagtc tccccgtctc gcctcccaaa cagccactcc cacgcagcgt gggagctccc
    12421 cagtccgagc agggttctaa gccctctgct cccacacggc accctgtctg cggccctcca
    12481 cgagcacgga ggatgcgcac acacgcacgg atccctggcc gctggttgcc ttccgtcagg
    12541 agtcaggtgc tgccattccg ttggtccgga acgctcagaa aatgccacca cttcctgcca
    12601 agagagcctc cctcgaggcc cccggcagcg tgctgagcgc ctgggagcag aagggcagac
    12661 gcatcctcgc gaggtgacaa aggtcacacc cgagaggcca gcaggaggca cctcgggacc
    12721 tcagagggag tgacgtccgg ctggtggatc ttcacgtagg ggtctgcgcg gaggcagcgg
    12781 gcgaggccct gagcacgcac ccggcccgcc agcttccagg ccagggtggc cagaggtgaa
    12841 gcctctggga ccccgccatg gctgtggccg cctggagctc gggcccacag ggagagcagc
    12901 ggaaaggcag ctctcagcgg ggctccccgc cccgccctgc cctgaggacc caaagccgct
    12961 cagacagcct gtgtgtccca cgcatctgac gcctgctatc caggtcgagg gctctgggcc
    13021 gcgaccggct ggcaggtgcc ccgcgatggc ggccagaagc cacgcacaca cctgaaaggc
    13081 cccccacgtc catcttcttg aggttcttgg cctccaggat gcagacgagc gagctgctgt
    13141 cctccaagcc ctcggcatcc ctttccttgt gttagcgtca cagggcaagg acctcgtgac
    13201 tagcaagagg gggctcccgg gcccgagagc tcggccggcg ccatggcaca gtcgaggctt
    13261 ctcagaggcg ggcctcggga cccaggctgg ccgcctcgcc cacagcccgg tcagggtgct
    13321 gacccttcct ccgggcgacc tgagccccga ggtccctcca ctcctcgatg ggctgcccca
    13381 ggtccacggt gttcatgggc acctttacct ccccgatgat gtcgtgcttg gagaagcggt
    13441 caaagtcgta gatggccatc accagggtct tgccccccag ctcctggagg aagaccttga
    13501 cgtaagggtc cgaggtgccg cccatgtcca gggcgggcag ctccgctgcc tgcaggacgc
    13561 ccacgccggg gtgcccgccc cgtggagccc tgggggccgc cccgcgcacc tggttggcct
    13621 ggaagtcata gtccagggag aactgcagct tccccaggtt ctccggctcc tcgccctcgc
    13681 cctcgccctc gccctccgtc aggcccgtct cggcatcatc gtcgtcctgg ggggctgagg
    13741 aggggaggga gggtcaaggg agaaaaggcg gggagcctgc ccccgtgcag accccaaccc
    13801 agagctggag gggctccgtc gggccctgct tcccctcagc ccccagcccg gccctgtccc
    13861 tgcggggcca gcacggccca gatgccacgc ggcttcttga gtggcggagc ctccctgtga
    13921 ccccccaccc cgcccccagc tcaggccacc acgtgggcag cacgtaccag gcgtgcaggc
    13981 cgggcgtcca ggccaggcga gtccacaggt gggaggagaa gggagagagt ggtaagaaaa
    14041 tcctgcagct cagaccagcc gcatggcagg gccggggccc ccacaggctc acacgcacac
    14101 gcacgtccac gtgcgtgctc acacacgctc tcacacatgt gcacacgcag actcaaaggc
    14161 cacggcccct ggctgacctc ctgagatcag ccctccttcc tccctccaca ctgattcctt
    14221 gagcaagaaa ttcctcccag aacaaacatg gggaaagtga ggtgcccggg gcctctgcaa
    14281 acttaaaagg agacacaggt acatcagggc gtcttccagg ctgctccctg aaagatgggg
    14341 agaagagcca cgtctttgtg gacgagagac ggacccacag ggccccacaa tgaggacatg
    14401 gtccagcagc cctgccggca ggaaaccggg tcacacgatg gtggcttccc ggtgggcggg
    14461 ggtctctctt cccagcattt tgtcccaacg gcctcctttc gggtcagtca aggacagtcc
    14521 ctgctgacct gagcgagctc ttcccacctg gagagcatcg aggggcctct ggtcacccgg
    14581 ccccgcctac ctggccaccc ttcatgtcct tcatgttcat ggcgttcttg gcgcccttgc
    14641 ccttctcctt cttgttcttc ttcttcttcc agcagcactt cttgcagatg cagaagcagc
    14701 aggtgaggag cagaaggccc aggagcaccg cgatggcgcc cagcgcccag gggggcactg
    14761 cccacaggga gacggggtca gcggcgctcg ggcagccccg acccctcgag gatagaaagc
    14821 tgggtcgggg cccggccccg ctgccgcacc ccgcgttgta aacccacgtt aagttgcatg
    14881 cttcggtgcc ctcccctttc tgccacccca gcagggacag cctgtgacag ggacagcagc
    14941 caggcgcaca ccacggggcc ctcatctggg ctctgctgag atctgacggc tttgaccctt
    15001 ggaactgtgg ctcacacgaa ggatgggagg gtcctcatca gaccccggtg gggtaggaag
    15061 gcccggccct caggcgcagt cctgagaggg ctgagcctgc gccaggaggc cgggctcaga
    15121 gggcccgcgg gtctggggaa gtgcggggag gggcgggccg cgggccggcc ggggctgctc
    15181 tccgaggtgc tgaagcaccg cctccctcca gtggggctgc tccccgaatc cggacctcgg
    15241 gtttctcccc acagccttta ccaggaatcc aggaagcagt agggggtttt attttctatc
    15301 ttgcaaaata aagcagtttt aaagta
//
LOCUS       XM_032653808           15105 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X6, mRNA.
ACCESSION   XM_032653808
VERSION     XM_032653808.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15105
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15105
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..3084
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X1"
                     /protein_id="XP_032509699.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLEL
                     GGSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQE
                     AQLELADVKSKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELK
                     SDNQRLKDENGALIRVISKLSK"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2776..3081
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 catgaacgac tttctaggtt ggaattggga ggcagtgacg ccagcagcga gcgggcctcg
     2701 gccagagccc gccgggaggc ccgcgaggcc cgcctggcca ccctgagcag ccgcgcgggg
     2761 gaagacagca gcagggacta cagaaagctc tacgagagcg ccctgaccga aaaccagaaa
     2821 ctgaagacaa aacttcagga ggcccagctc gagctggcag acgtgaaatc caagcttgag
     2881 aagatggccc agcagaaaca agacaagacc gccgaccggt cgtcggtgct ggagatggag
     2941 aagcgggaga ggcgagcctt ggagcggaag atgtcggaga tggaggagga gatgaaggtc
     3001 ctgacagaac tgaaatccga caaccagagg ctgaaggacg agaatggcgc cctcatcagg
     3061 gtcatcagca agctgtccaa gtaggccagg cgctggcttc ccgggacggc gctggccccg
     3121 cctctccccc gccggcgccc accggccaag aggagccacg aggacctttc tctggccgtc
     3181 atccagttgc cacctctgca ccctccgtgt cccctcctcc ggcccccgcc gctggggttc
     3241 agacagtttc catcgaagca cgactgcgat ccctcaaccg atagagccat ctggtggagg
     3301 cctgggggtc gccaggccag ccgtggaccc ggcctccggt tgccgggcca ctggtccacg
     3361 tagcacttgg tccaggcccc agccctgctg ccaccgccat gcgctctgat gtgggacaca
     3421 cgtggggagg tctctggagc tgccgccact agatccaagt tgacagtgac tccacgtcgg
     3481 ggcccctgct tgtccttgcc tctcaggaac tgacttttct ctaactcccg ccggtggtgg
     3541 tggaattttt tctaccagca acccagtggc acctgactgg tcttaacgcc cgttccctcc
     3601 gtgtctggcc ctctccccag ggctcaggtg accgggcttg cctcttctct ttctgccctt
     3661 ttactttcct tcctccgtcc gccccgcggc gcgtaccccg ggaggtgggc gctgggacag
     3721 agcaccgacc ccagcggtgt gcccgggcag tggcaccgcc ggcctctccc cggccaggcc
     3781 gggctcagct ccccaccgtc ctccccacgc agcgtttctc tgctagaaca cccgcctgcc
     3841 ccacctccct ttgacctggt ctcctctcct gaagagaagt gatgccgctg tgaggaggcg
     3901 tgggggcgtc tgaggccccc cccttcatgc cttgtgctgt gagcgtggtg ggcttgatgg
     3961 catctggggc gtgtccaggg gagagacgat tgtttgttcg gaagccagca ggaggaacga
     4021 gtctggactc ggagtggcga gacccggtgg ccaaggctgt gtcccaggga ccccaccccg
     4081 ctgtcaggga gcctctggcg gctgcgcctt gatcgctcga aagctgggcg gcttggatga
     4141 gagttgaggt cttcctgagg gtccccctgt aacgtgacag ccctgccgta cctgcggctg
     4201 gggaccccca aggtgctgac gctcccctgg gcctggaagt cggtccccac gcgccctgct
     4261 tttcccacct gacccgtctt ggctatcctc ctctggacga aaacctggac aggtggctcc
     4321 cttggttcag cacagaatta ggtcatgagt tcttgatgat gccccagcat taacacttaa
     4381 gtgtttgctt tttgtaggcg ctttatccct cggctggttt gagtgtgcag gtcgctttgg
     4441 ggttgccgga gacatttagt gtgtagcggt ccgttctcaa catacgctac ctctgtctag
     4501 tttctctttc tttccagccc cttccatggc cctcagaaac gtcacatgct ctttaaccca
     4561 gagccatgat caaggtccca gttcgggata ggagatttgt ctcgtggggc aaaacccctt
     4621 tctcagagtg tgcaaaatct tccatgtccg gccatttcct gcgaggagcg acgcctgggc
     4681 acgggtgatt tgtgttgtcg gggccggggg tgggttgcgt ggggggatgc tgagagcgaa
     4741 gtttcatatc ttccactgta gcgtttcctt tgttctgggg gaggggagcg ggcacgaggc
     4801 cttggccttg accctgactc tccggcacac cctgggtgct gggccaggac tggaaaagga
     4861 aactgaatta ttaggacgtc acctggactc tcttgcatca ggcagaccag gcagaggggc
     4921 cgcagcacgc cctccgctcc gtctgtgcct ttcgggggcg cgggcggctc tcggaacccg
     4981 gtcgggctgt gtcccgcgcc tccctccagc ccttctgtgt caggcctctc cactcaggaa
     5041 gccaggctct gtggctagag cccgtggtgt ggaccagccc gtgatctcag gcgctctctc
     5101 tcttatgcaa ctaagtctgt gagacagact ctgaatctgg tctctttcca ggctgtgctg
     5161 gtccgcgagg tgatggtcag gggccccctc gctacctctg gggttgcgcc ctgtcaccgc
     5221 ggtgcctgga tgggtggtca gcgctggggg gagggcctcg tcggccttgg ccagcggttt
     5281 tctggacagg tcgcacctct gggagtgaca accagcctct gagagtctga gtctctggct
     5341 gaagcctcac tgcttctccc cctcgtgcct gaggccccag gttgggcctt ggaagggtct
     5401 gaaggaagga cgagccctgg cctgtctcct cggcccactt gcagggcgtc agctcctctg
     5461 cttccctgcc ctgagcaaat cgtgtgcatg ttagcgccac tcggggcaaa cggcagctgg
     5521 aatcccactt ccaagcccgt ggaccccacc aaggtgtgtg tgagctacca gcgtggaggg
     5581 gagccgctcg tctccgtctc caggtttctg gccctggagc aggcctctcc cacccagacg
     5641 ggcacagaca gaggggcttc ccagcttcca ggccaccgtg tggctccgaa gggaaaacct
     5701 cggggactca gcagctgggc cagtagggag tgggcccctg gttccatccg ctgggtgagc
     5761 gctggcgtcc tggcctccag caccacccct gactctggac atggcggcca gcggtcatag
     5821 gtggtcctgc ccctgtcggg gcccagttac aagtacagag cgtggtcccc attacggggt
     5881 tttaaggcag gtttcagcac ctcggagggt gtgtctcctg accttgcagg aaggcagctg
     5941 tggcggcaga acgaggccgc tgaaaggacc gggcatcggg gcccggggcc agcgcctgtc
     6001 ctgaccagcc gtgtggccgt ctgtgaaagg gggctgggtc ggtggtcctc aggacccctt
     6061 cttggcttga gagtctgtga tgatttgttg attcctgaga ccagaacatt tctcactcag
     6121 agtttttgct ctaacttcaa aaattctttt cttctcattc agatggttta agagtgtgtc
     6181 aaggtgggaa ggtgaattca gtctggaggg tagtggccgt ccctcctgat ggcctggtga
     6241 gaatgtgcaa acccgcgggg gtggaaacac ggcctctgga tgagtggttc tcacgggagg
     6301 ggcctggctc ctggcgtcca gacagcagac ccgctgtgtt tccccccacc ggccactcag
     6361 tctcagctct gccttaagca ccagagggcc ttcctcgagg aaaccccagc ctttagtttt
     6421 gtggggccat cagatctgga cctgggctgt cgcaagccga ggtccctccc ctgagcaggg
     6481 ctgcagggag tttacaccaa aggctgcagg accgagcagc ccccggggag gagggggagg
     6541 gccagggtct ggggcccgca tccctcagcc tccaaacaag ccgaagcttt gctcggcccc
     6601 cccggatggg tatgtagact gtgtcaagga tggccattga tcgcttgtgc tctgattaga
     6661 ttgggcagta gatcagcttc actgcggccc cgggaaccgt cattgtcaca gctgcttggg
     6721 agtgaggtgg gctcgggaga atctggaccg gcgtagcagg cgatgcagcc cctcctgtga
     6781 gggtcgtggt cggacgtcag gttgaggagg ggtcctggga gcccctcctt gggaagtaca
     6841 tctagagaca gacacggctg agggttggcc tgatgctgcc ttaggaggtt tcgagctttg
     6901 gggatcactc ttgcttctaa gcctgtgtgc gcacgcgtgt ttgctacatg gagatttcaa
     6961 aatgcaacct catcacccag tttcatccaa gtgtgttact ctgttaacgc atctcttttg
     7021 cttcccccct ccattcccca gaggacgtct ctctgagctt cttctccagt taatctgttc
     7081 atttcggact gggaatctgc cagagtgacc tcttctgtta cttctccaga ttttccccta
     7141 atgctcccag taaacttttc ctgggtggcc ctttaaggtg acctcacgcc gctcctgtct
     7201 ttgcaaaata aacacacctt tcaccctccc gcctactctc atcttcctcc ccattaattt
     7261 tttgcttttc tcacttggag ctggtggtgc tttagaggag agattgtcca cgaatcagcc
     7321 ccgactcctc tggttgcaaa gctgactggc tgtgccactt tcccctcgaa ggtgaggttt
     7381 ggccctagcc tgggcggggc ccatgggcag cctggcctcg tctgcacagc tagagactga
     7441 gtgagtcctc aggagggcac cgggcagtgt cggtgcgtct gggacagtgg ctcatctgct
     7501 gttgccttgc aggagcgggt tcaggaaagg cagggccccg ggggcctcgt tgaagcctcg
     7561 atggtctcac agaagcagga ctcggggtgg gggcaggtcc tggacgtggg gtgctaggct
     7621 ggcctctgag cctgacctgc gtcttctctc cataccgcgc tcttctgggg agggggctcg
     7681 gagggaaata cgaggggctc aagccaagac agcaggaggt gggccgcagg ggtgggggtt
     7741 cccttgcacc cctgaaaggc tggggctgct gtcaggctgg cccccaggtg ggggagggcg
     7801 agactgtccc catgttccgc catgggggac tctgactcag gctgcagcgc cgtggtcccc
     7861 cctcgtcccc ctccgttccc tctgcctctg tcttgatcgg tggaaagagc tgtgagaccc
     7921 tccctggggt ctccacaccc ccattccagg ggtagcattt tgtctctgtt caccttaccc
     7981 ccacctgact tcccctccaa gaaagcacca gagggaccgt tttaagtcgg ctccgttgta
     8041 aatacacgtg gtggggatag gggtttaggg agggacccag atgcgctttg tgagctgaat
     8101 gtatttttat gcaattctga gtggcctttc aactccgaga tgaatgactt tgttttactg
     8161 gttattatat agtgttatta agtattctgt gtttgaaagt ttgggaataa taatatccac
     8221 atctacatga tgcctgtaaa cgcaacagta tttataaata agtaaattgt gttttaactt
     8281 tgtgactgtg tccacagttt aggaaatggg gtttatagaa ccttacatag ggccagcctg
     8341 tggtagtttc acgtcaccat ccttgccact gggggcctct gtcccaggga tggccacagg
     8401 ggccaaggag gagcctgggg ggctcccagc ctcgggggtg ggcactggtg ctctcacccc
     8461 gggaggccgg ggccctgaga aggtggcttc cttgggttcc cggggtctct gcccgctgct
     8521 ccgtgcagta ctgtctctgc agggccaccg ctcagttcag ggcagccgga accactccat
     8581 ggctccagac tctaaaggca gctggtgggg gtcactggag gctaaggtgc tcggccgctg
     8641 gcaggggggc cagggtcggg ccctccgtcc gtcctagtgc accccgtctg gtttgctcag
     8701 accccattca cacccagcgg aggccccgtc accgagctgc aggtcacgga ggtgagggag
     8761 ggaggcgtct tctcccctgc ggccacccag ctgctggcct gcggcccaaa tcggaggcaa
     8821 aggatcaggt ctggagtgag ggctcctctg ggtgcccgct gggcccgggg aagtcagcgg
     8881 agactgggca tcgcctggag gcggtgaggc ccggcccttc cctcctgaag actccccagc
     8941 cctcgtgctg cgctggcctt gcccccctca atcccagcct ctgccaggcc agccttacag
     9001 gctctgcctt ctcgtccctg gagcttgccc ctgagccgga tgcccccctc cacctgtggc
     9061 agaggggctg cgggggcctc cctgaggaga tggcccccag atcgcagtga ggacgggtca
     9121 cccttccagg tctgggggcg gtgctgccct accgtctctt tccagaaaat cctgaagccc
     9181 cgtcctcggc ctcaggagtc acagacgtct gaagaagtcg gctgcggtga gctaaccgag
     9241 ggcttgtagg aaccgtccct cctctgaccc caccccaggg ccagatggtg gccgcgcccc
     9301 gagcccggct ctgctggcag cggggagccg ggggtctagt ccaccccagc ccccgggagg
     9361 cctcgcccca gcagctgccc tgagggccca cgcgcccacc gcccagctgg acctggcctg
     9421 gccttctggt tcctccagcc cctgagggaa gagccgtgtc cccagcctca ccccccgcgc
     9481 tgaccctggg agcggctcct gctccccagc ccagcaggaa caaccagaga ccgcccccag
     9541 cgtgctttca gctcattcct ttaataagga aatgccgctt attacaaaag aacatgttga
     9601 caagaaatga gacaagaaca gagtccacgg ggctgggggc ggggggggtg ctggacgtgg
     9661 gtccttcctg ggacggcgaa ggcaggggtc ctggtggggc tgcgcgtgcc agggggcctg
     9721 gggcctgccc accatgctct tgcagtcttc agaccccagg atttcagaag cagcggatcc
     9781 cgccctcgca gaggaggcgc cagggcagaa catctggctt ctcggaaggg gtcctagggt
     9841 cccgatggct gaggggggcc ctacgcgccc ccggctcccg ccaccccccc agcacaaggg
     9901 gcctggctcg tagcgcacag ggcccacctg cccacctgcg gcctcgtcgg tgctcctgtc
     9961 agaccccctg catttccccc tcctcccatc agggctggcc ggaggggtcg ctcccgtgcg
    10021 tggcgttcct ctgcaccggg gcctgcggct cctgtccctc ctggttcagc gagatggctc
    10081 gggacctggg gtcccccggc ccccttccac ctcccgccct cccatgggac acctggccgg
    10141 ggctgggctg gggcaccggt gagggtccct cgagccagag ccgcccagcc gcaggagaga
    10201 gcatgcgggg gagcttggcc taccgtgctc tccagccccc ggggtccctc cccactgcca
    10261 ccctcggccc cccaagcccc cagtgtcacg tgagcagggc tggttgtcca gctgggcggc
    10321 atcagggacc tgaccacaga ctcggccacc aacagctcct gagaaccctc gtcgcctgca
    10381 cggggtaccc ccgtggccca tccacccccc actacgtgga gtcagactgc aacaccaggt
    10441 gagggagccg ggccagcggg ggcatctgct ggggccccac tgggagacct ggacaccatc
    10501 cgtcctcgca acgtggggct gggagcagac gtgacgatgg gtgagccctt cacgagtgtc
    10561 ctgaggggag ccctgggagg atggcttttc agtgaattca gagagtggga ggagggggca
    10621 caccacacac acacacacac aggacacagg gctggacgca gggcgccgag ggtcagctct
    10681 gcccacggtc ccctggtcag accagggcca gaggccaact ccccccggcg cgtggcaggg
    10741 caggggggcc gggagggcga ggggaaggac tttacacaca aagtcgaagg agcagctcaa
    10801 gttgtgtaaa acggggctgg gggcactcag cattgccatg cggttattta cagagttgag
    10861 acatgcgtct tggtgggacg agactggggt cgtgttcaca ggtgaccacc ctctccgtga
    10921 ggctcaaatg gcttcagaag gttctcgttt tgttgtcgct taaaagatat attcttgtgt
    10981 cttcaagtca cagtgtcccc cttcccaata ttgcagctca aagaatgggt agaatcctgg
    11041 tgacctgtcc ctgccccctg aggctagggg tgagggcgag gcagaagtgg tcgcaggact
    11101 ggcctgccag acagagcatg gacggcgggg cagcctgagt ttcggtagac tttgggagtg
    11161 aaaacgcaca gcctggaggc ctccagaacc cctcgtagcc aaccttaatt ctgtcccact
    11221 caggacagga tcccgacacc ccagaaacaa gcctggtggc agtgaaggtg ctctgtggac
    11281 tggcccgggc cctaggacca gcccacagtc ttcgtcaggt cccagcttct cggcatcaag
    11341 tgaagaatga cttcctgagg accgagggcc acgagcaagc ctgagcccca ctgcccagct
    11401 gctgctcccg gaggagacgg cttctcacca cctgcccagc cgggaaacgc agccgggcag
    11461 gaacacacgc ctgctccttt ctgacagtga aagagacgtc cctctgcctc aggtgcccgc
    11521 ggacgccagg gtggctagac ggggtgggag gtgccgccac gtgtgctggg aaagaggcgc
    11581 agctccgggt ctgggaagcc ttgagtgttc tgcgccgagg agagggccag ggcctgcagc
    11641 cgcagagacg agggcggctg aggggggccg ggggccggat gctctcgccc aggctgcagg
    11701 tttggaagga gactcggcgc acactggact aacgtatata tggcttttta tcgatgctgg
    11761 ggacacgagg tgcgcgggga acgaggacag tgaccgcggg gcagaacccg gcccgtgtcc
    11821 tccgccaccc ctcggaatgg ctgccctgcc cctcgggatt cacagcaagt ccctcaggaa
    11881 tgctaggcgg ggcctccccg cagggcccct gggaaagctc agccagctgt ccactaccct
    11941 cccctcctta cctgggcctc aggggaacta agaacctgta aaccttcctt ttcaagccct
    12001 ctggctctga acggataccg tgtcttcaga cagcgctgct ccactttgat taagggagga
    12061 gcacaggcgg gagggtgaga gatgccagtg actgctggct cccgtcctag aaagggagcc
    12121 ggcgtctggg tctcccaccg caagggcaaa ggcccggcag tttcatttgg gcctttccgg
    12181 gaagcgggtc ttctgtttct ttgcggtttg acatcacccg tcagcaaggt gaggtcgcgg
    12241 gacggacagt ccccgttcga gtccagccag tctagcctgt agctcaggtc tgtggtgtcc
    12301 cgggaagccc ccggcagcag gaggaggtcc acgccggcag cgggctttgg tcctggctct
    12361 gcacagtcca gtctccccgt ctcgcctccc aaacagccac tcccacgcag cgtgggagct
    12421 ccccagtccg agcagggttc taagccctct gctcccacac ggcaccctgt ctgcggccct
    12481 ccacgagcac ggaggatgcg cacacacgca cggatccctg gccgctggtt gccttccgtc
    12541 aggagtcagg tgctgccatt ccgttggtcc ggaacgctca gaaaatgcca ccacttcctg
    12601 ccaagagagc ctccctcgag gcccccggca gcgtgctgag cgcctgggag cagaagggca
    12661 gacgcatcct cgcgaggtga caaaggtcac acccgagagg ccagcaggag gcacctcggg
    12721 acctcagagg gagtgacgtc cggctggtgg atcttcacgt aggggtctgc gcggaggcag
    12781 cgggcgaggc cctgagcacg cacccggccc gccagcttcc aggccagggt ggccagaggt
    12841 gaagcctctg ggaccccgcc atggctgtgg ccgcctggag ctcgggccca cagggagagc
    12901 agcggaaagg cagctctcag cggggctccc cgccccgccc tgccctgagg acccaaagcc
    12961 gctcagacag cctgtgtgtc ccacgcatct gacgcctgct atccaggtcg agggctctgg
    13021 gccgcgaccg gctggcaggt gccccgcgat ggcggccaga agccacgcac acacctgaaa
    13081 ggccccccac gtccatcttc ttgaggttct tggcctccag gatgcagacg gtccctccac
    13141 tcctcgatgg gctgccccag gtccacggtg ttcatgggca cctttacctc cccgatgatg
    13201 tcgtgcttgg agaagcggtc aaagtcgtag atggccatca ccagggtctt gccccccagc
    13261 tcctggagga agaccttgac gtaagggtcc gaggtgccgc ccatgtccag ggcgggcagc
    13321 tccgctgcct gcaggacgcc cacgccgggg tgcccgcccc gtggagccct gggggccgcc
    13381 ccgcgcacct ggttggcctg gaagtcatag tccagggaga actgcagctt ccccaggttc
    13441 tccggctcct cgccctcgcc ctcgccctcg ccctccgtca ggcccgtctc ggcatcatcg
    13501 tcgtcctggg gggctgagga ggggagggag ggtcaaggga gaaaaggcgg ggagcctgcc
    13561 cccgtgcaga ccccaaccca gagctggagg ggctccgtcg ggccctgctt cccctcagcc
    13621 cccagcccgg ccctgtccct gcggggccag cacggcccag atgccacgcg gcttcttgag
    13681 tggcggagcc tccctgtgac cccccacccc gcccccagct caggccacca cgtgggcagc
    13741 acgtaccagg cgtgcaggcc gggcgtccag gccaggcgag tccacaggtg ggaggagaag
    13801 ggagagagtg gtaagaaaat cctgcagctc agaccagccg catggcaggg ccggggcccc
    13861 cacaggctca cacgcacacg cacgtccacg tgcgtgctca cacacgctct cacacatgtg
    13921 cacacgcaga ctcaaaggcc acggcccctg gctgacctcc tgagatcagc cctccttcct
    13981 ccctccacac tgattccttg agcaagaaat tcctcccaga acaaacatgg ggaaagtgag
    14041 gtgcccgggg cctctgcaaa cttaaaagga gacacaggta catcagggcg tcttccaggc
    14101 tgctccctga aagatgggga gaagagccac gtctttgtgg acgagagacg gacccacagg
    14161 gccccacaat gaggacatgg tccagcagcc ctgccggcag gaaaccgggt cacacgatgg
    14221 tggcttcccg gtgggcgggg gtctctcttc ccagcatttt gtcccaacgg cctcctttcg
    14281 ggtcagtcaa ggacagtccc tgctgacctg agcgagctct tcccacctgg agagcatcga
    14341 ggggcctctg gtcacccggc cccgcctacc tggccaccct tcatgtcctt catgttcatg
    14401 gcgttcttgg cgcccttgcc cttctccttc ttgttcttct tcttcttcca gcagcacttc
    14461 ttgcagatgc agaagcagca ggtgaggagc agaaggccca ggagcaccgc gatggcgccc
    14521 agcgcccagg ggggcactgc ccacagggag acggggtcag cggcgctcgg gcagccccga
    14581 cccctcgagg atagaaagct gggtcggggc ccggccccgc tgccgcaccc cgcgttgtaa
    14641 acccacgtta agttgcatgc ttcggtgccc tcccctttct gccaccccag cagggacagc
    14701 ctgtgacagg gacagcagcc aggcgcacac cacggggccc tcatctgggc tctgctgaga
    14761 tctgacggct ttgacccttg gaactgtggc tcacacgaag gatgggaggg tcctcatcag
    14821 accccggtgg ggtaggaagg cccggccctc aggcgcagtc ctgagagggc tgagcctgcg
    14881 ccaggaggcc gggctcagag ggcccgcggg tctggggaag tgcggggagg ggcgggccgc
    14941 gggccggccg gggctgctct ccgaggtgct gaagcaccgc ctccctccag tggggctgct
    15001 ccccgaatcc ggacctcggg tttctcccca cagcctttac caggaatcca ggaagcagta
    15061 gggggtttta ttttctatct tgcaaaataa agcagtttta aagta
//
LOCUS       XM_032653809           15326 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X7, mRNA.
ACCESSION   XM_032653809
VERSION     XM_032653809.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15326
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15326
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..3081
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X2"
                     /protein_id="XP_032509700.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLEL
                     GGSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQE
                     AQLELADVKSKLEKMAQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELKS
                     DNQRLKDENGALIRVISKLSK"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2776..3078
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 catgaacgac tttctaggtt ggaattggga ggcagtgacg ccagcagcga gcgggcctcg
     2701 gccagagccc gccgggaggc ccgcgaggcc cgcctggcca ccctgagcag ccgcgcgggg
     2761 gaagacagca gcagggacta cagaaagctc tacgagagcg ccctgaccga aaaccagaaa
     2821 ctgaagacaa aacttcagga ggcccagctc gagctggcag acgtgaaatc caagcttgag
     2881 aagatggccc agaaacaaga caagaccgcc gaccggtcgt cggtgctgga gatggagaag
     2941 cgggagaggc gagccttgga gcggaagatg tcggagatgg aggaggagat gaaggtcctg
     3001 acagaactga aatccgacaa ccagaggctg aaggacgaga atggcgccct catcagggtc
     3061 atcagcaagc tgtccaagta ggccaggcgc tggcttcccg ggacggcgct ggccccgcct
     3121 ctcccccgcc ggcgcccacc ggccaagagg agccacgagg acctttctct ggccgtcatc
     3181 cagttgccac ctctgcaccc tccgtgtccc ctcctccggc ccccgccgct ggggttcaga
     3241 cagtttccat cgaagcacga ctgcgatccc tcaaccgata gagccatctg gtggaggcct
     3301 gggggtcgcc aggccagccg tggacccggc ctccggttgc cgggccactg gtccacgtag
     3361 cacttggtcc aggccccagc cctgctgcca ccgccatgcg ctctgatgtg ggacacacgt
     3421 ggggaggtct ctggagctgc cgccactaga tccaagttga cagtgactcc acgtcggggc
     3481 ccctgcttgt ccttgcctct caggaactga cttttctcta actcccgccg gtggtggtgg
     3541 aattttttct accagcaacc cagtggcacc tgactggtct taacgcccgt tccctccgtg
     3601 tctggccctc tccccagggc tcaggtgacc gggcttgcct cttctctttc tgccctttta
     3661 ctttccttcc tccgtccgcc ccgcggcgcg taccccggga ggtgggcgct gggacagagc
     3721 accgacccca gcggtgtgcc cgggcagtgg caccgccggc ctctccccgg ccaggccggg
     3781 ctcagctccc caccgtcctc cccacgcagc gtttctctgc tagaacaccc gcctgcccca
     3841 cctccctttg acctggtctc ctctcctgaa gagaagtgat gccgctgtga ggaggcgtgg
     3901 gggcgtctga ggcccccccc ttcatgcctt gtgctgtgag cgtggtgggc ttgatggcat
     3961 ctggggcgtg tccaggggag agacgattgt ttgttcggaa gccagcagga ggaacgagtc
     4021 tggactcgga gtggcgagac ccggtggcca aggctgtgtc ccagggaccc caccccgctg
     4081 tcagggagcc tctggcggct gcgccttgat cgctcgaaag ctgggcggct tggatgagag
     4141 ttgaggtctt cctgagggtc cccctgtaac gtgacagccc tgccgtacct gcggctgggg
     4201 acccccaagg tgctgacgct cccctgggcc tggaagtcgg tccccacgcg ccctgctttt
     4261 cccacctgac ccgtcttggc tatcctcctc tggacgaaaa cctggacagg tggctccctt
     4321 ggttcagcac agaattaggt catgagttct tgatgatgcc ccagcattaa cacttaagtg
     4381 tttgcttttt gtaggcgctt tatccctcgg ctggtttgag tgtgcaggtc gctttggggt
     4441 tgccggagac atttagtgtg tagcggtccg ttctcaacat acgctacctc tgtctagttt
     4501 ctctttcttt ccagcccctt ccatggccct cagaaacgtc acatgctctt taacccagag
     4561 ccatgatcaa ggtcccagtt cgggatagga gatttgtctc gtggggcaaa acccctttct
     4621 cagagtgtgc aaaatcttcc atgtccggcc atttcctgcg aggagcgacg cctgggcacg
     4681 ggtgatttgt gttgtcgggg ccgggggtgg gttgcgtggg gggatgctga gagcgaagtt
     4741 tcatatcttc cactgtagcg tttcctttgt tctgggggag gggagcgggc acgaggcctt
     4801 ggccttgacc ctgactctcc ggcacaccct gggtgctggg ccaggactgg aaaaggaaac
     4861 tgaattatta ggacgtcacc tggactctct tgcatcaggc agaccaggca gaggggccgc
     4921 agcacgccct ccgctccgtc tgtgcctttc gggggcgcgg gcggctctcg gaacccggtc
     4981 gggctgtgtc ccgcgcctcc ctccagccct tctgtgtcag gcctctccac tcaggaagcc
     5041 aggctctgtg gctagagccc gtggtgtgga ccagcccgtg atctcaggcg ctctctctct
     5101 tatgcaacta agtctgtgag acagactctg aatctggtct ctttccaggc tgtgctggtc
     5161 cgcgaggtga tggtcagggg ccccctcgct acctctgggg ttgcgccctg tcaccgcggt
     5221 gcctggatgg gtggtcagcg ctggggggag ggcctcgtcg gccttggcca gcggttttct
     5281 ggacaggtcg cacctctggg agtgacaacc agcctctgag agtctgagtc tctggctgaa
     5341 gcctcactgc ttctccccct cgtgcctgag gccccaggtt gggccttgga agggtctgaa
     5401 ggaaggacga gccctggcct gtctcctcgg cccacttgca gggcgtcagc tcctctgctt
     5461 ccctgccctg agcaaatcgt gtgcatgtta gcgccactcg gggcaaacgg cagctggaat
     5521 cccacttcca agcccgtgga ccccaccaag gtgtgtgtga gctaccagcg tggaggggag
     5581 ccgctcgtct ccgtctccag gtttctggcc ctggagcagg cctctcccac ccagacgggc
     5641 acagacagag gggcttccca gcttccaggc caccgtgtgg ctccgaaggg aaaacctcgg
     5701 ggactcagca gctgggccag tagggagtgg gcccctggtt ccatccgctg ggtgagcgct
     5761 ggcgtcctgg cctccagcac cacccctgac tctggacatg gcggccagcg gtcataggtg
     5821 gtcctgcccc tgtcggggcc cagttacaag tacagagcgt ggtccccatt acggggtttt
     5881 aaggcaggtt tcagcacctc ggagggtgtg tctcctgacc ttgcaggaag gcagctgtgg
     5941 cggcagaacg aggccgctga aaggaccggg catcggggcc cggggccagc gcctgtcctg
     6001 accagccgtg tggccgtctg tgaaaggggg ctgggtcggt ggtcctcagg accccttctt
     6061 ggcttgagag tctgtgatga tttgttgatt cctgagacca gaacatttct cactcagagt
     6121 ttttgctcta acttcaaaaa ttcttttctt ctcattcaga tggtttaaga gtgtgtcaag
     6181 gtgggaaggt gaattcagtc tggagggtag tggccgtccc tcctgatggc ctggtgagaa
     6241 tgtgcaaacc cgcgggggtg gaaacacggc ctctggatga gtggttctca cgggaggggc
     6301 ctggctcctg gcgtccagac agcagacccg ctgtgtttcc ccccaccggc cactcagtct
     6361 cagctctgcc ttaagcacca gagggccttc ctcgaggaaa ccccagcctt tagttttgtg
     6421 gggccatcag atctggacct gggctgtcgc aagccgaggt ccctcccctg agcagggctg
     6481 cagggagttt acaccaaagg ctgcaggacc gagcagcccc cggggaggag ggggagggcc
     6541 agggtctggg gcccgcatcc ctcagcctcc aaacaagccg aagctttgct cggccccccc
     6601 ggatgggtat gtagactgtg tcaaggatgg ccattgatcg cttgtgctct gattagattg
     6661 ggcagtagat cagcttcact gcggccccgg gaaccgtcat tgtcacagct gcttgggagt
     6721 gaggtgggct cgggagaatc tggaccggcg tagcaggcga tgcagcccct cctgtgaggg
     6781 tcgtggtcgg acgtcaggtt gaggaggggt cctgggagcc cctccttggg aagtacatct
     6841 agagacagac acggctgagg gttggcctga tgctgcctta ggaggtttcg agctttgggg
     6901 atcactcttg cttctaagcc tgtgtgcgca cgcgtgtttg ctacatggag atttcaaaat
     6961 gcaacctcat cacccagttt catccaagtg tgttactctg ttaacgcatc tcttttgctt
     7021 cccccctcca ttccccagag gacgtctctc tgagcttctt ctccagttaa tctgttcatt
     7081 tcggactggg aatctgccag agtgacctct tctgttactt ctccagattt tcccctaatg
     7141 ctcccagtaa acttttcctg ggtggccctt taaggtgacc tcacgccgct cctgtctttg
     7201 caaaataaac acacctttca ccctcccgcc tactctcatc ttcctcccca ttaatttttt
     7261 gcttttctca cttggagctg gtggtgcttt agaggagaga ttgtccacga atcagccccg
     7321 actcctctgg ttgcaaagct gactggctgt gccactttcc cctcgaaggt gaggtttggc
     7381 cctagcctgg gcggggccca tgggcagcct ggcctcgtct gcacagctag agactgagtg
     7441 agtcctcagg agggcaccgg gcagtgtcgg tgcgtctggg acagtggctc atctgctgtt
     7501 gccttgcagg agcgggttca ggaaaggcag ggccccgggg gcctcgttga agcctcgatg
     7561 gtctcacaga agcaggactc ggggtggggg caggtcctgg acgtggggtg ctaggctggc
     7621 ctctgagcct gacctgcgtc ttctctccat accgcgctct tctggggagg gggctcggag
     7681 ggaaatacga ggggctcaag ccaagacagc aggaggtggg ccgcaggggt gggggttccc
     7741 ttgcacccct gaaaggctgg ggctgctgtc aggctggccc ccaggtgggg gagggcgaga
     7801 ctgtccccat gttccgccat gggggactct gactcaggct gcagcgccgt ggtcccccct
     7861 cgtccccctc cgttccctct gcctctgtct tgatcggtgg aaagagctgt gagaccctcc
     7921 ctggggtctc cacaccccca ttccaggggt agcattttgt ctctgttcac cttaccccca
     7981 cctgacttcc cctccaagaa agcaccagag ggaccgtttt aagtcggctc cgttgtaaat
     8041 acacgtggtg gggatagggg tttagggagg gacccagatg cgctttgtga gctgaatgta
     8101 tttttatgca attctgagtg gcctttcaac tccgagatga atgactttgt tttactggtt
     8161 attatatagt gttattaagt attctgtgtt tgaaagtttg ggaataataa tatccacatc
     8221 tacatgatgc ctgtaaacgc aacagtattt ataaataagt aaattgtgtt ttaactttgt
     8281 gactgtgtcc acagtttagg aaatggggtt tatagaacct tacatagggc cagcctgtgg
     8341 tagtttcacg tcaccatcct tgccactggg ggcctctgtc ccagggatgg ccacaggggc
     8401 caaggaggag cctggggggc tcccagcctc gggggtgggc actggtgctc tcaccccggg
     8461 aggccggggc cctgagaagg tggcttcctt gggttcccgg ggtctctgcc cgctgctccg
     8521 tgcagtactg tctctgcagg gccaccgctc agttcagggc agccggaacc actccatggc
     8581 tccagactct aaaggcagct ggtgggggtc actggaggct aaggtgctcg gccgctggca
     8641 ggggggccag ggtcgggccc tccgtccgtc ctagtgcacc ccgtctggtt tgctcagacc
     8701 ccattcacac ccagcggagg ccccgtcacc gagctgcagg tcacggaggt gagggaggga
     8761 ggcgtcttct cccctgcggc cacccagctg ctggcctgcg gcccaaatcg gaggcaaagg
     8821 atcaggtctg gagtgagggc tcctctgggt gcccgctggg cccggggaag tcagcggaga
     8881 ctgggcatcg cctggaggcg gtgaggcccg gcccttccct cctgaagact ccccagccct
     8941 cgtgctgcgc tggccttgcc cccctcaatc ccagcctctg ccaggccagc cttacaggct
     9001 ctgccttctc gtccctggag cttgcccctg agccggatgc ccccctccac ctgtggcaga
     9061 ggggctgcgg gggcctccct gaggagatgg cccccagatc gcagtgagga cgggtcaccc
     9121 ttccaggtct gggggcggtg ctgccctacc gtctctttcc agaaaatcct gaagccccgt
     9181 cctcggcctc aggagtcaca gacgtctgaa gaagtcggct gcggtgagct aaccgagggc
     9241 ttgtaggaac cgtccctcct ctgaccccac cccagggcca gatggtggcc gcgccccgag
     9301 cccggctctg ctggcagcgg ggagccgggg gtctagtcca ccccagcccc cgggaggcct
     9361 cgccccagca gctgccctga gggcccacgc gcccaccgcc cagctggacc tggcctggcc
     9421 ttctggttcc tccagcccct gagggaagag ccgtgtcccc agcctcaccc cccgcgctga
     9481 ccctgggagc ggctcctgct ccccagccca gcaggaacaa ccagagaccg cccccagcgt
     9541 gctttcagct cattccttta ataaggaaat gccgcttatt acaaaagaac atgttgacaa
     9601 gaaatgagac aagaacagag tccacggggc tgggggcggg gggggtgctg gacgtgggtc
     9661 cttcctggga cggcgaaggc aggggtcctg gtggggctgc gcgtgccagg gggcctgggg
     9721 cctgcccacc atgctcttgc agtcttcaga ccccaggatt tcagaagcag cggatcccgc
     9781 cctcgcagag gaggcgccag ggcagaacat ctggcttctc ggaaggggtc ctagggtccc
     9841 gatggctgag gggggcccta cgcgcccccg gctcccgcca cccccccagc acaaggggcc
     9901 tggctcgtag cgcacagggc ccacctgccc acctgcggcc tcgtcggtgc tcctgtcaga
     9961 ccccctgcat ttccccctcc tcccatcagg gctggccgga ggggtcgctc ccgtgcgtgg
    10021 cgttcctctg caccggggcc tgcggctcct gtccctcctg gttcagcgag atggctcggg
    10081 acctggggtc ccccggcccc cttccacctc ccgccctccc atgggacacc tggccggggc
    10141 tgggctgggg caccggtgag ggtccctcga gccagagccg cccagccgca ggagagagca
    10201 tgcgggggag cttggcctac cgtgctctcc agcccccggg gtccctcccc actgccaccc
    10261 tcggcccccc aagcccccag tgtcacgtga gcagggctgg ttgtccagct gggcggcatc
    10321 agggacctga ccacagactc ggccaccaac agctcctgag aaccctcgtc gcctgcacgg
    10381 ggtacccccg tggcccatcc accccccact acgtggagtc agactgcaac accaggtgag
    10441 ggagccgggc cagcgggggc atctgctggg gccccactgg gagacctgga caccatccgt
    10501 cctcgcaacg tggggctggg agcagacgtg acgatgggtg agcccttcac gagtgtcctg
    10561 aggggagccc tgggaggatg gcttttcagt gaattcagag agtgggagga gggggcacac
    10621 cacacacaca cacacacagg acacagggct ggacgcaggg cgccgagggt cagctctgcc
    10681 cacggtcccc tggtcagacc agggccagag gccaactccc cccggcgcgt ggcagggcag
    10741 gggggccggg agggcgaggg gaaggacttt acacacaaag tcgaaggagc agctcaagtt
    10801 gtgtaaaacg gggctggggg cactcagcat tgccatgcgg ttatttacag agttgagaca
    10861 tgcgtcttgg tgggacgaga ctggggtcgt gttcacaggt gaccaccctc tccgtgaggc
    10921 tcaaatggct tcagaaggtt ctcgttttgt tgtcgcttaa aagatatatt cttgtgtctt
    10981 caagtcacag tgtccccctt cccaatattg cagctcaaag aatgggtaga atcctggtga
    11041 cctgtccctg ccccctgagg ctaggggtga gggcgaggca gaagtggtcg caggactggc
    11101 ctgccagaca gagcatggac ggcggggcag cctgagtttc ggtagacttt gggagtgaaa
    11161 acgcacagcc tggaggcctc cagaacccct cgtagccaac cttaattctg tcccactcag
    11221 gacaggatcc cgacacccca gaaacaagcc tggtggcagt gaaggtgctc tgtggactgg
    11281 cccgggccct aggaccagcc cacagtcttc gtcaggtccc agcttctcgg catcaagtga
    11341 agaatgactt cctgaggacc gagggccacg agcaagcctg agccccactg cccagctgct
    11401 gctcccggag gagacggctt ctcaccacct gcccagccgg gaaacgcagc cgggcaggaa
    11461 cacacgcctg ctcctttctg acagtgaaag agacgtccct ctgcctcagg tgcccgcgga
    11521 cgccagggtg gctagacggg gtgggaggtg ccgccacgtg tgctgggaaa gaggcgcagc
    11581 tccgggtctg ggaagccttg agtgttctgc gccgaggaga gggccagggc ctgcagccgc
    11641 agagacgagg gcggctgagg ggggccgggg gccggatgct ctcgcccagg ctgcaggttt
    11701 ggaaggagac tcggcgcaca ctggactaac gtatatatgg ctttttatcg atgctgggga
    11761 cacgaggtgc gcggggaacg aggacagtga ccgcggggca gaacccggcc cgtgtcctcc
    11821 gccacccctc ggaatggctg ccctgcccct cgggattcac agcaagtccc tcaggaatgc
    11881 taggcggggc ctccccgcag ggcccctggg aaagctcagc cagctgtcca ctaccctccc
    11941 ctccttacct gggcctcagg ggaactaaga acctgtaaac cttccttttc aagccctctg
    12001 gctctgaacg gataccgtgt cttcagacag cgctgctcca ctttgattaa gggaggagca
    12061 caggcgggag ggtgagagat gccagtgact gctggctccc gtcctagaaa gggagccggc
    12121 gtctgggtct cccaccgcaa gggcaaaggc ccggcagttt catttgggcc tttccgggaa
    12181 gcgggtcttc tgtttctttg cggtttgaca tcacccgtca gcaaggtgag gtcgcgggac
    12241 ggacagtccc cgttcgagtc cagccagtct agcctgtagc tcaggtctgt ggtgtcccgg
    12301 gaagcccccg gcagcaggag gaggtccacg ccggcagcgg gctttggtcc tggctctgca
    12361 cagtccagtc tccccgtctc gcctcccaaa cagccactcc cacgcagcgt gggagctccc
    12421 cagtccgagc agggttctaa gccctctgct cccacacggc accctgtctg cggccctcca
    12481 cgagcacgga ggatgcgcac acacgcacgg atccctggcc gctggttgcc ttccgtcagg
    12541 agtcaggtgc tgccattccg ttggtccgga acgctcagaa aatgccacca cttcctgcca
    12601 agagagcctc cctcgaggcc cccggcagcg tgctgagcgc ctgggagcag aagggcagac
    12661 gcatcctcgc gaggtgacaa aggtcacacc cgagaggcca gcaggaggca cctcgggacc
    12721 tcagagggag tgacgtccgg ctggtggatc ttcacgtagg ggtctgcgcg gaggcagcgg
    12781 gcgaggccct gagcacgcac ccggcccgcc agcttccagg ccagggtggc cagaggtgaa
    12841 gcctctggga ccccgccatg gctgtggccg cctggagctc gggcccacag ggagagcagc
    12901 ggaaaggcag ctctcagcgg ggctccccgc cccgccctgc cctgaggacc caaagccgct
    12961 cagacagcct gtgtgtccca cgcatctgac gcctgctatc caggtcgagg gctctgggcc
    13021 gcgaccggct ggcaggtgcc ccgcgatggc ggccagaagc cacgcacaca cctgaaaggc
    13081 cccccacgtc catcttcttg aggttcttgg cctccaggat gcagacgagc gagctgctgt
    13141 cctccaagcc ctcggcatcc ctttccttgt gttagcgtca cagggcaagg acctcgtgac
    13201 tagcaagagg gggctcccgg gcccgagagc tcggccggcg ccatggcaca gtcgaggctt
    13261 ctcagaggcg ggcctcggga cccaggctgg ccgcctcgcc cacagcccgg tcagggtgct
    13321 gacccttcct ccgggcgacc tgagccccga ggtccctcca ctcctcgatg ggctgcccca
    13381 ggtccacggt gttcatgggc acctttacct ccccgatgat gtcgtgcttg gagaagcggt
    13441 caaagtcgta gatggccatc accagggtct tgccccccag ctcctggagg aagaccttga
    13501 cgtaagggtc cgaggtgccg cccatgtcca gggcgggcag ctccgctgcc tgcaggacgc
    13561 ccacgccggg gtgcccgccc cgtggagccc tgggggccgc cccgcgcacc tggttggcct
    13621 ggaagtcata gtccagggag aactgcagct tccccaggtt ctccggctcc tcgccctcgc
    13681 cctcgccctc gccctccgtc aggcccgtct cggcatcatc gtcgtcctgg ggggctgagg
    13741 aggggaggga gggtcaaggg agaaaaggcg gggagcctgc ccccgtgcag accccaaccc
    13801 agagctggag gggctccgtc gggccctgct tcccctcagc ccccagcccg gccctgtccc
    13861 tgcggggcca gcacggccca gatgccacgc ggcttcttga gtggcggagc ctccctgtga
    13921 ccccccaccc cgcccccagc tcaggccacc acgtgggcag cacgtaccag gcgtgcaggc
    13981 cgggcgtcca ggccaggcga gtccacaggt gggaggagaa gggagagagt ggtaagaaaa
    14041 tcctgcagct cagaccagcc gcatggcagg gccggggccc ccacaggctc acacgcacac
    14101 gcacgtccac gtgcgtgctc acacacgctc tcacacatgt gcacacgcag actcaaaggc
    14161 cacggcccct ggctgacctc ctgagatcag ccctccttcc tccctccaca ctgattcctt
    14221 gagcaagaaa ttcctcccag aacaaacatg gggaaagtga ggtgcccggg gcctctgcaa
    14281 acttaaaagg agacacaggt acatcagggc gtcttccagg ctgctccctg aaagatgggg
    14341 agaagagcca cgtctttgtg gacgagagac ggacccacag ggccccacaa tgaggacatg
    14401 gtccagcagc cctgccggca ggaaaccggg tcacacgatg gtggcttccc ggtgggcggg
    14461 ggtctctctt cccagcattt tgtcccaacg gcctcctttc gggtcagtca aggacagtcc
    14521 ctgctgacct gagcgagctc ttcccacctg gagagcatcg aggggcctct ggtcacccgg
    14581 ccccgcctac ctggccaccc ttcatgtcct tcatgttcat ggcgttcttg gcgcccttgc
    14641 ccttctcctt cttgttcttc ttcttcttcc agcagcactt cttgcagatg cagaagcagc
    14701 aggtgaggag cagaaggccc aggagcaccg cgatggcgcc cagcgcccag gggggcactg
    14761 cccacaggga gacggggtca gcggcgctcg ggcagccccg acccctcgag gatagaaagc
    14821 tgggtcgggg cccggccccg ctgccgcacc ccgcgttgta aacccacgtt aagttgcatg
    14881 cttcggtgcc ctcccctttc tgccacccca gcagggacag cctgtgacag ggacagcagc
    14941 caggcgcaca ccacggggcc ctcatctggg ctctgctgag atctgacggc tttgaccctt
    15001 ggaactgtgg ctcacacgaa ggatgggagg gtcctcatca gaccccggtg gggtaggaag
    15061 gcccggccct caggcgcagt cctgagaggg ctgagcctgc gccaggaggc cgggctcaga
    15121 gggcccgcgg gtctggggaa gtgcggggag gggcgggccg cgggccggcc ggggctgctc
    15181 tccgaggtgc tgaagcaccg cctccctcca gtggggctgc tccccgaatc cggacctcgg
    15241 gtttctcccc acagccttta ccaggaatcc aggaagcagt agggggtttt attttctatc
    15301 ttgcaaaata aagcagtttt aaagta
//
LOCUS       XM_032653810           15251 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X8, mRNA.
ACCESSION   XM_032653810
VERSION     XM_032653810.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15251
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15251
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..3006
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X3"
                     /protein_id="XP_032509701.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTEGEEADLGGQSSNRLSIRERRRPKERRRG
                     TGISFWTKDEDETDVSEEVKAAWHERLSRLELGGSDASSERASARARREAREARLATL
                     SSRAGEDSSRDYRKLYESALTENQKLKTKLQEAQLELADVKSKLEKMAQQKQDKTADR
                     SSVLEMEKRERRALERKMSEMEEEMKVLTELKSDNQRLKDENGALIRVISKLSK"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2388
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2698..3003
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacggagg gcgaagaagc agatttgggt ggtcagtcgt ctaacaggct gtccattcgt
     2461 gagaggaggc ggcccaagga gcgacgaaga ggcacaggca tcagcttctg gacgaaggat
     2521 gaagatgaaa ctgatgtctc ggaagaggtg aaagcagcgt ggcatgaacg actttctagg
     2581 ttggaattgg gaggcagtga cgccagcagc gagcgggcct cggccagagc ccgccgggag
     2641 gcccgcgagg cccgcctggc caccctgagc agccgcgcgg gggaagacag cagcagggac
     2701 tacagaaagc tctacgagag cgccctgacc gaaaaccaga aactgaagac aaaacttcag
     2761 gaggcccagc tcgagctggc agacgtgaaa tccaagcttg agaagatggc ccagcagaaa
     2821 caagacaaga ccgccgaccg gtcgtcggtg ctggagatgg agaagcggga gaggcgagcc
     2881 ttggagcgga agatgtcgga gatggaggag gagatgaagg tcctgacaga actgaaatcc
     2941 gacaaccaga ggctgaagga cgagaatggc gccctcatca gggtcatcag caagctgtcc
     3001 aagtaggcca ggcgctggct tcccgggacg gcgctggccc cgcctctccc ccgccggcgc
     3061 ccaccggcca agaggagcca cgaggacctt tctctggccg tcatccagtt gccacctctg
     3121 caccctccgt gtcccctcct ccggcccccg ccgctggggt tcagacagtt tccatcgaag
     3181 cacgactgcg atccctcaac cgatagagcc atctggtgga ggcctggggg tcgccaggcc
     3241 agccgtggac ccggcctccg gttgccgggc cactggtcca cgtagcactt ggtccaggcc
     3301 ccagccctgc tgccaccgcc atgcgctctg atgtgggaca cacgtgggga ggtctctgga
     3361 gctgccgcca ctagatccaa gttgacagtg actccacgtc ggggcccctg cttgtccttg
     3421 cctctcagga actgactttt ctctaactcc cgccggtggt ggtggaattt tttctaccag
     3481 caacccagtg gcacctgact ggtcttaacg cccgttccct ccgtgtctgg ccctctcccc
     3541 agggctcagg tgaccgggct tgcctcttct ctttctgccc ttttactttc cttcctccgt
     3601 ccgccccgcg gcgcgtaccc cgggaggtgg gcgctgggac agagcaccga ccccagcggt
     3661 gtgcccgggc agtggcaccg ccggcctctc cccggccagg ccgggctcag ctccccaccg
     3721 tcctccccac gcagcgtttc tctgctagaa cacccgcctg ccccacctcc ctttgacctg
     3781 gtctcctctc ctgaagagaa gtgatgccgc tgtgaggagg cgtgggggcg tctgaggccc
     3841 cccccttcat gccttgtgct gtgagcgtgg tgggcttgat ggcatctggg gcgtgtccag
     3901 gggagagacg attgtttgtt cggaagccag caggaggaac gagtctggac tcggagtggc
     3961 gagacccggt ggccaaggct gtgtcccagg gaccccaccc cgctgtcagg gagcctctgg
     4021 cggctgcgcc ttgatcgctc gaaagctggg cggcttggat gagagttgag gtcttcctga
     4081 gggtccccct gtaacgtgac agccctgccg tacctgcggc tggggacccc caaggtgctg
     4141 acgctcccct gggcctggaa gtcggtcccc acgcgccctg cttttcccac ctgacccgtc
     4201 ttggctatcc tcctctggac gaaaacctgg acaggtggct cccttggttc agcacagaat
     4261 taggtcatga gttcttgatg atgccccagc attaacactt aagtgtttgc tttttgtagg
     4321 cgctttatcc ctcggctggt ttgagtgtgc aggtcgcttt ggggttgccg gagacattta
     4381 gtgtgtagcg gtccgttctc aacatacgct acctctgtct agtttctctt tctttccagc
     4441 cccttccatg gccctcagaa acgtcacatg ctctttaacc cagagccatg atcaaggtcc
     4501 cagttcggga taggagattt gtctcgtggg gcaaaacccc tttctcagag tgtgcaaaat
     4561 cttccatgtc cggccatttc ctgcgaggag cgacgcctgg gcacgggtga tttgtgttgt
     4621 cggggccggg ggtgggttgc gtggggggat gctgagagcg aagtttcata tcttccactg
     4681 tagcgtttcc tttgttctgg gggaggggag cgggcacgag gccttggcct tgaccctgac
     4741 tctccggcac accctgggtg ctgggccagg actggaaaag gaaactgaat tattaggacg
     4801 tcacctggac tctcttgcat caggcagacc aggcagaggg gccgcagcac gccctccgct
     4861 ccgtctgtgc ctttcggggg cgcgggcggc tctcggaacc cggtcgggct gtgtcccgcg
     4921 cctccctcca gcccttctgt gtcaggcctc tccactcagg aagccaggct ctgtggctag
     4981 agcccgtggt gtggaccagc ccgtgatctc aggcgctctc tctcttatgc aactaagtct
     5041 gtgagacaga ctctgaatct ggtctctttc caggctgtgc tggtccgcga ggtgatggtc
     5101 aggggccccc tcgctacctc tggggttgcg ccctgtcacc gcggtgcctg gatgggtggt
     5161 cagcgctggg gggagggcct cgtcggcctt ggccagcggt tttctggaca ggtcgcacct
     5221 ctgggagtga caaccagcct ctgagagtct gagtctctgg ctgaagcctc actgcttctc
     5281 cccctcgtgc ctgaggcccc aggttgggcc ttggaagggt ctgaaggaag gacgagccct
     5341 ggcctgtctc ctcggcccac ttgcagggcg tcagctcctc tgcttccctg ccctgagcaa
     5401 atcgtgtgca tgttagcgcc actcggggca aacggcagct ggaatcccac ttccaagccc
     5461 gtggacccca ccaaggtgtg tgtgagctac cagcgtggag gggagccgct cgtctccgtc
     5521 tccaggtttc tggccctgga gcaggcctct cccacccaga cgggcacaga cagaggggct
     5581 tcccagcttc caggccaccg tgtggctccg aagggaaaac ctcggggact cagcagctgg
     5641 gccagtaggg agtgggcccc tggttccatc cgctgggtga gcgctggcgt cctggcctcc
     5701 agcaccaccc ctgactctgg acatggcggc cagcggtcat aggtggtcct gcccctgtcg
     5761 gggcccagtt acaagtacag agcgtggtcc ccattacggg gttttaaggc aggtttcagc
     5821 acctcggagg gtgtgtctcc tgaccttgca ggaaggcagc tgtggcggca gaacgaggcc
     5881 gctgaaagga ccgggcatcg gggcccgggg ccagcgcctg tcctgaccag ccgtgtggcc
     5941 gtctgtgaaa gggggctggg tcggtggtcc tcaggacccc ttcttggctt gagagtctgt
     6001 gatgatttgt tgattcctga gaccagaaca tttctcactc agagtttttg ctctaacttc
     6061 aaaaattctt ttcttctcat tcagatggtt taagagtgtg tcaaggtggg aaggtgaatt
     6121 cagtctggag ggtagtggcc gtccctcctg atggcctggt gagaatgtgc aaacccgcgg
     6181 gggtggaaac acggcctctg gatgagtggt tctcacggga ggggcctggc tcctggcgtc
     6241 cagacagcag acccgctgtg tttcccccca ccggccactc agtctcagct ctgccttaag
     6301 caccagaggg ccttcctcga ggaaacccca gcctttagtt ttgtggggcc atcagatctg
     6361 gacctgggct gtcgcaagcc gaggtccctc ccctgagcag ggctgcaggg agtttacacc
     6421 aaaggctgca ggaccgagca gcccccgggg aggaggggga gggccagggt ctggggcccg
     6481 catccctcag cctccaaaca agccgaagct ttgctcggcc cccccggatg ggtatgtaga
     6541 ctgtgtcaag gatggccatt gatcgcttgt gctctgatta gattgggcag tagatcagct
     6601 tcactgcggc cccgggaacc gtcattgtca cagctgcttg ggagtgaggt gggctcggga
     6661 gaatctggac cggcgtagca ggcgatgcag cccctcctgt gagggtcgtg gtcggacgtc
     6721 aggttgagga ggggtcctgg gagcccctcc ttgggaagta catctagaga cagacacggc
     6781 tgagggttgg cctgatgctg ccttaggagg tttcgagctt tggggatcac tcttgcttct
     6841 aagcctgtgt gcgcacgcgt gtttgctaca tggagatttc aaaatgcaac ctcatcaccc
     6901 agtttcatcc aagtgtgtta ctctgttaac gcatctcttt tgcttccccc ctccattccc
     6961 cagaggacgt ctctctgagc ttcttctcca gttaatctgt tcatttcgga ctgggaatct
     7021 gccagagtga cctcttctgt tacttctcca gattttcccc taatgctccc agtaaacttt
     7081 tcctgggtgg ccctttaagg tgacctcacg ccgctcctgt ctttgcaaaa taaacacacc
     7141 tttcaccctc ccgcctactc tcatcttcct ccccattaat tttttgcttt tctcacttgg
     7201 agctggtggt gctttagagg agagattgtc cacgaatcag ccccgactcc tctggttgca
     7261 aagctgactg gctgtgccac tttcccctcg aaggtgaggt ttggccctag cctgggcggg
     7321 gcccatgggc agcctggcct cgtctgcaca gctagagact gagtgagtcc tcaggagggc
     7381 accgggcagt gtcggtgcgt ctgggacagt ggctcatctg ctgttgcctt gcaggagcgg
     7441 gttcaggaaa ggcagggccc cgggggcctc gttgaagcct cgatggtctc acagaagcag
     7501 gactcggggt gggggcaggt cctggacgtg gggtgctagg ctggcctctg agcctgacct
     7561 gcgtcttctc tccataccgc gctcttctgg ggagggggct cggagggaaa tacgaggggc
     7621 tcaagccaag acagcaggag gtgggccgca ggggtggggg ttcccttgca cccctgaaag
     7681 gctggggctg ctgtcaggct ggcccccagg tgggggaggg cgagactgtc cccatgttcc
     7741 gccatggggg actctgactc aggctgcagc gccgtggtcc cccctcgtcc ccctccgttc
     7801 cctctgcctc tgtcttgatc ggtggaaaga gctgtgagac cctccctggg gtctccacac
     7861 ccccattcca ggggtagcat tttgtctctg ttcaccttac ccccacctga cttcccctcc
     7921 aagaaagcac cagagggacc gttttaagtc ggctccgttg taaatacacg tggtggggat
     7981 aggggtttag ggagggaccc agatgcgctt tgtgagctga atgtattttt atgcaattct
     8041 gagtggcctt tcaactccga gatgaatgac tttgttttac tggttattat atagtgttat
     8101 taagtattct gtgtttgaaa gtttgggaat aataatatcc acatctacat gatgcctgta
     8161 aacgcaacag tatttataaa taagtaaatt gtgttttaac tttgtgactg tgtccacagt
     8221 ttaggaaatg gggtttatag aaccttacat agggccagcc tgtggtagtt tcacgtcacc
     8281 atccttgcca ctgggggcct ctgtcccagg gatggccaca ggggccaagg aggagcctgg
     8341 ggggctccca gcctcggggg tgggcactgg tgctctcacc ccgggaggcc ggggccctga
     8401 gaaggtggct tccttgggtt cccggggtct ctgcccgctg ctccgtgcag tactgtctct
     8461 gcagggccac cgctcagttc agggcagccg gaaccactcc atggctccag actctaaagg
     8521 cagctggtgg gggtcactgg aggctaaggt gctcggccgc tggcaggggg gccagggtcg
     8581 ggccctccgt ccgtcctagt gcaccccgtc tggtttgctc agaccccatt cacacccagc
     8641 ggaggccccg tcaccgagct gcaggtcacg gaggtgaggg agggaggcgt cttctcccct
     8701 gcggccaccc agctgctggc ctgcggccca aatcggaggc aaaggatcag gtctggagtg
     8761 agggctcctc tgggtgcccg ctgggcccgg ggaagtcagc ggagactggg catcgcctgg
     8821 aggcggtgag gcccggccct tccctcctga agactcccca gccctcgtgc tgcgctggcc
     8881 ttgcccccct caatcccagc ctctgccagg ccagccttac aggctctgcc ttctcgtccc
     8941 tggagcttgc ccctgagccg gatgcccccc tccacctgtg gcagaggggc tgcgggggcc
     9001 tccctgagga gatggccccc agatcgcagt gaggacgggt cacccttcca ggtctggggg
     9061 cggtgctgcc ctaccgtctc tttccagaaa atcctgaagc cccgtcctcg gcctcaggag
     9121 tcacagacgt ctgaagaagt cggctgcggt gagctaaccg agggcttgta ggaaccgtcc
     9181 ctcctctgac cccaccccag ggccagatgg tggccgcgcc ccgagcccgg ctctgctggc
     9241 agcggggagc cgggggtcta gtccacccca gcccccggga ggcctcgccc cagcagctgc
     9301 cctgagggcc cacgcgccca ccgcccagct ggacctggcc tggccttctg gttcctccag
     9361 cccctgaggg aagagccgtg tccccagcct caccccccgc gctgaccctg ggagcggctc
     9421 ctgctcccca gcccagcagg aacaaccaga gaccgccccc agcgtgcttt cagctcattc
     9481 ctttaataag gaaatgccgc ttattacaaa agaacatgtt gacaagaaat gagacaagaa
     9541 cagagtccac ggggctgggg gcgggggggg tgctggacgt gggtccttcc tgggacggcg
     9601 aaggcagggg tcctggtggg gctgcgcgtg ccagggggcc tggggcctgc ccaccatgct
     9661 cttgcagtct tcagacccca ggatttcaga agcagcggat cccgccctcg cagaggaggc
     9721 gccagggcag aacatctggc ttctcggaag gggtcctagg gtcccgatgg ctgagggggg
     9781 ccctacgcgc ccccggctcc cgccaccccc ccagcacaag gggcctggct cgtagcgcac
     9841 agggcccacc tgcccacctg cggcctcgtc ggtgctcctg tcagaccccc tgcatttccc
     9901 cctcctccca tcagggctgg ccggaggggt cgctcccgtg cgtggcgttc ctctgcaccg
     9961 gggcctgcgg ctcctgtccc tcctggttca gcgagatggc tcgggacctg gggtcccccg
    10021 gcccccttcc acctcccgcc ctcccatggg acacctggcc ggggctgggc tggggcaccg
    10081 gtgagggtcc ctcgagccag agccgcccag ccgcaggaga gagcatgcgg gggagcttgg
    10141 cctaccgtgc tctccagccc ccggggtccc tccccactgc caccctcggc cccccaagcc
    10201 cccagtgtca cgtgagcagg gctggttgtc cagctgggcg gcatcaggga cctgaccaca
    10261 gactcggcca ccaacagctc ctgagaaccc tcgtcgcctg cacggggtac ccccgtggcc
    10321 catccacccc ccactacgtg gagtcagact gcaacaccag gtgagggagc cgggccagcg
    10381 ggggcatctg ctggggcccc actgggagac ctggacacca tccgtcctcg caacgtgggg
    10441 ctgggagcag acgtgacgat gggtgagccc ttcacgagtg tcctgagggg agccctggga
    10501 ggatggcttt tcagtgaatt cagagagtgg gaggaggggg cacaccacac acacacacac
    10561 acaggacaca gggctggacg cagggcgccg agggtcagct ctgcccacgg tcccctggtc
    10621 agaccagggc cagaggccaa ctccccccgg cgcgtggcag ggcagggggg ccgggagggc
    10681 gaggggaagg actttacaca caaagtcgaa ggagcagctc aagttgtgta aaacggggct
    10741 gggggcactc agcattgcca tgcggttatt tacagagttg agacatgcgt cttggtggga
    10801 cgagactggg gtcgtgttca caggtgacca ccctctccgt gaggctcaaa tggcttcaga
    10861 aggttctcgt tttgttgtcg cttaaaagat atattcttgt gtcttcaagt cacagtgtcc
    10921 cccttcccaa tattgcagct caaagaatgg gtagaatcct ggtgacctgt ccctgccccc
    10981 tgaggctagg ggtgagggcg aggcagaagt ggtcgcagga ctggcctgcc agacagagca
    11041 tggacggcgg ggcagcctga gtttcggtag actttgggag tgaaaacgca cagcctggag
    11101 gcctccagaa cccctcgtag ccaaccttaa ttctgtccca ctcaggacag gatcccgaca
    11161 ccccagaaac aagcctggtg gcagtgaagg tgctctgtgg actggcccgg gccctaggac
    11221 cagcccacag tcttcgtcag gtcccagctt ctcggcatca agtgaagaat gacttcctga
    11281 ggaccgaggg ccacgagcaa gcctgagccc cactgcccag ctgctgctcc cggaggagac
    11341 ggcttctcac cacctgccca gccgggaaac gcagccgggc aggaacacac gcctgctcct
    11401 ttctgacagt gaaagagacg tccctctgcc tcaggtgccc gcggacgcca gggtggctag
    11461 acggggtggg aggtgccgcc acgtgtgctg ggaaagaggc gcagctccgg gtctgggaag
    11521 ccttgagtgt tctgcgccga ggagagggcc agggcctgca gccgcagaga cgagggcggc
    11581 tgaggggggc cgggggccgg atgctctcgc ccaggctgca ggtttggaag gagactcggc
    11641 gcacactgga ctaacgtata tatggctttt tatcgatgct ggggacacga ggtgcgcggg
    11701 gaacgaggac agtgaccgcg gggcagaacc cggcccgtgt cctccgccac ccctcggaat
    11761 ggctgccctg cccctcggga ttcacagcaa gtccctcagg aatgctaggc ggggcctccc
    11821 cgcagggccc ctgggaaagc tcagccagct gtccactacc ctcccctcct tacctgggcc
    11881 tcaggggaac taagaacctg taaaccttcc ttttcaagcc ctctggctct gaacggatac
    11941 cgtgtcttca gacagcgctg ctccactttg attaagggag gagcacaggc gggagggtga
    12001 gagatgccag tgactgctgg ctcccgtcct agaaagggag ccggcgtctg ggtctcccac
    12061 cgcaagggca aaggcccggc agtttcattt gggcctttcc gggaagcggg tcttctgttt
    12121 ctttgcggtt tgacatcacc cgtcagcaag gtgaggtcgc gggacggaca gtccccgttc
    12181 gagtccagcc agtctagcct gtagctcagg tctgtggtgt cccgggaagc ccccggcagc
    12241 aggaggaggt ccacgccggc agcgggcttt ggtcctggct ctgcacagtc cagtctcccc
    12301 gtctcgcctc ccaaacagcc actcccacgc agcgtgggag ctccccagtc cgagcagggt
    12361 tctaagccct ctgctcccac acggcaccct gtctgcggcc ctccacgagc acggaggatg
    12421 cgcacacacg cacggatccc tggccgctgg ttgccttccg tcaggagtca ggtgctgcca
    12481 ttccgttggt ccggaacgct cagaaaatgc caccacttcc tgccaagaga gcctccctcg
    12541 aggcccccgg cagcgtgctg agcgcctggg agcagaaggg cagacgcatc ctcgcgaggt
    12601 gacaaaggtc acacccgaga ggccagcagg aggcacctcg ggacctcaga gggagtgacg
    12661 tccggctggt ggatcttcac gtaggggtct gcgcggaggc agcgggcgag gccctgagca
    12721 cgcacccggc ccgccagctt ccaggccagg gtggccagag gtgaagcctc tgggaccccg
    12781 ccatggctgt ggccgcctgg agctcgggcc cacagggaga gcagcggaaa ggcagctctc
    12841 agcggggctc cccgccccgc cctgccctga ggacccaaag ccgctcagac agcctgtgtg
    12901 tcccacgcat ctgacgcctg ctatccaggt cgagggctct gggccgcgac cggctggcag
    12961 gtgccccgcg atggcggcca gaagccacgc acacacctga aaggcccccc acgtccatct
    13021 tcttgaggtt cttggcctcc aggatgcaga cgagcgagct gctgtcctcc aagccctcgg
    13081 catccctttc cttgtgttag cgtcacaggg caaggacctc gtgactagca agagggggct
    13141 cccgggcccg agagctcggc cggcgccatg gcacagtcga ggcttctcag aggcgggcct
    13201 cgggacccag gctggccgcc tcgcccacag cccggtcagg gtgctgaccc ttcctccggg
    13261 cgacctgagc cccgaggtcc ctccactcct cgatgggctg ccccaggtcc acggtgttca
    13321 tgggcacctt tacctccccg atgatgtcgt gcttggagaa gcggtcaaag tcgtagatgg
    13381 ccatcaccag ggtcttgccc cccagctcct ggaggaagac cttgacgtaa gggtccgagg
    13441 tgccgcccat gtccagggcg ggcagctccg ctgcctgcag gacgcccacg ccggggtgcc
    13501 cgccccgtgg agccctgggg gccgccccgc gcacctggtt ggcctggaag tcatagtcca
    13561 gggagaactg cagcttcccc aggttctccg gctcctcgcc ctcgccctcg ccctcgccct
    13621 ccgtcaggcc cgtctcggca tcatcgtcgt cctggggggc tgaggagggg agggagggtc
    13681 aagggagaaa aggcggggag cctgcccccg tgcagacccc aacccagagc tggaggggct
    13741 ccgtcgggcc ctgcttcccc tcagccccca gcccggccct gtccctgcgg ggccagcacg
    13801 gcccagatgc cacgcggctt cttgagtggc ggagcctccc tgtgaccccc caccccgccc
    13861 ccagctcagg ccaccacgtg ggcagcacgt accaggcgtg caggccgggc gtccaggcca
    13921 ggcgagtcca caggtgggag gagaagggag agagtggtaa gaaaatcctg cagctcagac
    13981 cagccgcatg gcagggccgg ggcccccaca ggctcacacg cacacgcacg tccacgtgcg
    14041 tgctcacaca cgctctcaca catgtgcaca cgcagactca aaggccacgg cccctggctg
    14101 acctcctgag atcagccctc cttcctccct ccacactgat tccttgagca agaaattcct
    14161 cccagaacaa acatggggaa agtgaggtgc ccggggcctc tgcaaactta aaaggagaca
    14221 caggtacatc agggcgtctt ccaggctgct ccctgaaaga tggggagaag agccacgtct
    14281 ttgtggacga gagacggacc cacagggccc cacaatgagg acatggtcca gcagccctgc
    14341 cggcaggaaa ccgggtcaca cgatggtggc ttcccggtgg gcgggggtct ctcttcccag
    14401 cattttgtcc caacggcctc ctttcgggtc agtcaaggac agtccctgct gacctgagcg
    14461 agctcttccc acctggagag catcgagggg cctctggtca cccggccccg cctacctggc
    14521 cacccttcat gtccttcatg ttcatggcgt tcttggcgcc cttgcccttc tccttcttgt
    14581 tcttcttctt cttccagcag cacttcttgc agatgcagaa gcagcaggtg aggagcagaa
    14641 ggcccaggag caccgcgatg gcgcccagcg cccagggggg cactgcccac agggagacgg
    14701 ggtcagcggc gctcgggcag ccccgacccc tcgaggatag aaagctgggt cggggcccgg
    14761 ccccgctgcc gcaccccgcg ttgtaaaccc acgttaagtt gcatgcttcg gtgccctccc
    14821 ctttctgcca ccccagcagg gacagcctgt gacagggaca gcagccaggc gcacaccacg
    14881 gggccctcat ctgggctctg ctgagatctg acggctttga cccttggaac tgtggctcac
    14941 acgaaggatg ggagggtcct catcagaccc cggtggggta ggaaggcccg gccctcaggc
    15001 gcagtcctga gagggctgag cctgcgccag gaggccgggc tcagagggcc cgcgggtctg
    15061 gggaagtgcg gggaggggcg ggccgcgggc cggccggggc tgctctccga ggtgctgaag
    15121 caccgcctcc ctccagtggg gctgctcccc gaatccggac ctcgggtttc tccccacagc
    15181 ctttaccagg aatccaggaa gcagtagggg gttttatttt ctatcttgca aaataaagca
    15241 gttttaaagt a
//
LOCUS       XM_032653811            2818 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X9, mRNA.
ACCESSION   XM_032653811
VERSION     XM_032653811.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2818
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2818
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..2733
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X4"
                     /protein_id="XP_032509702.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWGARFQCRRT
                     SQTQRTVSHRFLRLRWDTSSH"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 ggtgcccgat tccagtgtag gagaacgtca cagacacagc gcacggtctc tcaccgattc
     2701 ctccgcctca gatgggacac gtcttcacat taaaaagccc atgcatgaac gactttctag
     2761 gttggaattg ggaggcagtg acgccagcag cgagcgggcc tcggccagag cccgccgg
//
LOCUS       XM_032653819            3210 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X10, mRNA.
ACCESSION   XM_032653819
VERSION     XM_032653819.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3210
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..2709
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X5"
                     /protein_id="XP_032509710.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWVDAGLGQPR
                     RRGLFTRDWFHGR"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 gtggacgctg ggctgggtca gccacggagg agaggcttgt tcaccagaga ctggttccat
     2701 ggcagatgaa caccaaggcc acctaccctg ttctgaatcc tcccacgatc aacgttccat
     2761 gagcgtctgc tacgtaagta ggcctgtact agatctggaa tcgagagatg aaagacacag
     2821 tccctgccct cagggagcca gcagtctaac tggggagatg agaagggaac tccaggatta
     2881 taacaagggg aagtgaatct tctaataaag gtacgtgggc ccaggtgctt tgttttagga
     2941 ggccggtcaa gcggagatgc ataaggccgt tgaacggaca gtgaaagcaa gcagtgcatg
     3001 accaaggtgg agaagagacg agaggaagga gagtgctact ctgagagctg cagatcgtgt
     3061 ggctgggaca ggagcatgaa cgactttcta ggttggaatt gggaggcagt gacgccagca
     3121 gcgagcgggc ctcggccaga gcccgccggg aggcccgcga ggcccgcctg gccaccctga
     3181 gcagccgcgc gggggaagac agcagcaggg
//
LOCUS       XM_032653828            3059 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X11, mRNA.
ACCESSION   XM_032653828
VERSION     XM_032653828.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3059
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..2709
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X5"
                     /protein_id="XP_032509719.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGE
                     EADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWVDAGLGQPR
                     RRGLFTRDWFHGR"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2454
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggta ggtcttcagc ccctgattca gagagttcag agccccccgc cagccctgca
     2461 ggggcaaagg aaatggacag aaacgagggc gaagaagcag atttgggtgg tcagtcgtct
     2521 aacaggctgt ccattcgtga gaggaggcgg cccaaggagc gacgaagagg cacaggcatc
     2581 agcttctgga cgaaggatga agatgaaact gatgtctcgg aagaggtgaa agcagcgtgg
     2641 gtggacgctg ggctgggtca gccacggagg agaggcttgt tcaccagaga ctggttccat
     2701 ggcagatgaa caccaaggcc acctaccctg ttctgaatcc tcccacgatc aacgttccat
     2761 gagcgtctgc tacgtgcttt gttttaggag gccggtcaag cggagatgca taaggccgtt
     2821 gaacggacag tgaaagcaag cagtgcatga ccaaggtgga gaagagacga gaggaaggag
     2881 agtgctactc tgagagctgc agatcgtgtg gctgggacag gagcatgaac gactttctag
     2941 gttggaattg ggaggcagtg acgccagcag cgagcgggcc tcggccagag cccgccggga
     3001 ggcccgcgag gcccgcctgg ccaccctgag cagccgcgcg ggggaagaca gcagcaggg
//
LOCUS       XM_032653837            2451 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X12, mRNA.
ACCESSION   XM_032653837
VERSION     XM_032653837.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2451
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..2424
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X6"
                     /protein_id="XP_032509728.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRI
                     PAQPDKPMTPVSPPAPRPSLYTSSYLLRTGAPGP"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1717..2388
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagcctgt gtatcgtcgc ctgaggattc cggctcagcc agacaaaccc
     2341 atgacaccag tgtcacctcc tgccccgaga ccctccctct acaccagttc ctacctgctc
     2401 cggacgggtg ccccaggtcc ttaagatcca cgccttgttt tctctctgac c
//
LOCUS       XM_032653844            2472 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X13, mRNA.
ACCESSION   XM_032653844
VERSION     XM_032653844.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2472
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764804"
     CDS             100..2301
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X7"
                     /protein_id="XP_032509735.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSR
                     AERQAQEQPSPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQT"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1972..2142
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag gtcgtatctg actcctgtac gggacgagga agcagagtca
     2041 ttacggaaag cgcgctccag acaagctcgg cagactcgca ggtctaccca aggtgtaacc
     2101 ctgacggatc tccaggaagc agaaaggacg ttcagccggt cgagggcaga gcgtcaggct
     2161 caggaacagc ccagcccgaa gcccgtgggc cccagagggc tcgacggcag cgcccagaag
     2221 catgagcccc tggcagcccc tgcagaggaa gctggggaga gccgccagcc ctgggaccgg
     2281 agtctggagg atcagacttg acctctgaca tctcatcatg tggattgttc cagcctgtgt
     2341 atcgtcgcct gaggattccg gctcagccag acaaacccat gacaccagtg tcacctcctg
     2401 ccccgagacc ctccctctac accagttcct acctgctccg gacgggtagg tcttcagccc
     2461 ctgattcaga ga
//
LOCUS       XM_032653855           14500 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X14, mRNA.
ACCESSION   XM_032653855
VERSION     XM_032653855.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14500
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..14500
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             168..2255
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X8"
                     /protein_id="XP_032509746.1"
                     /db_xref="GeneID:116764804"
                     /translation="MLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKNKEKLLYEEE
                     TPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTGGHCLSQDKK
                     PGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDESPSSWRLGL
                     RKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESRSSFSALGPR
                     RLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTYVTTYLKRPP
                     YKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTDSSVEARERR
                     RSYLTPVRDEEAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSRAERQAQEQP
                     SPKPVGPRGLDGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRIPAQPDKPMT
                     PVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGEEADLGGQSS
                     NRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLELGGSDASSER
                     ASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQEAQLELADVK
                     SKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELKSDNQRLKDE
                     NGALIRVISKLSK"
     misc_feature    <888..1625
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1143..1313
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    1947..2252
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 ctgcaggacg cccgccagtg gctcaacagc gggaaaatac aggatgtgag gcaggcgcgc
       61 tcaggggcca ctgccctcca tgtggctgcc gccaagggct actctgaggt cctcagggcc
      121 agacaccgtt tgatgtggct gacgagggcc tcgtggagca cctggagatg ctgcagaaga
      181 agcagagcgt gcttcgaagt gaaaaagaga cacggaataa gctcattgag tcggatctga
      241 acagcaagtt gcacggtaga ctctttaaga acaaagagaa gttgctctat gaggaggaga
      301 caccgaagcc ccaagaaatg gaggatgaaa acaaagaatc cagcagctcc agctcagacg
      361 aggacgaagg tgaagatgag gcttctgagt cagaaaccga gaaggaggcg ggtgatgccg
      421 agaccctctg tctgcagagc acggggggcc actgcttgtc acaagataaa aagccgggag
      481 ccatcgtcga ccgttgcaac tctgaaagca agagtagtgc cacagagcag acaccagcac
      541 cagcgcagat catctcctcc acctcttcag ccaggagatt ctccggcctt ttcaacaagc
      601 cggaagagcc cagagatgag tctccgtctt cgtggaggct gggcctcagg aagaccggca
      661 gccagaacgt gctgggcgag gcggccaggt ccagggaggc cctgcgggac cggggcgcgt
      721 ccatccaccg ctcggcctcc agcccccgca tctccactgt gctggacacc agagaaaagg
      781 agcgagaaag cagaagctct ttcagcgcac tggggccgcg gaggctgagc gccgccagcg
      841 acctggagga gaaggagaac agagagtcgg ctgctcacct ggtgcggagt ggcccccccg
      901 cccgccagct gcggagggac ggagcggagg ggagcgaatc tctgcagatg gccgcccctt
      961 ccacctacgt gacaacctac ctgaaaaggc ctccttacaa atcccaggct gactccgcag
     1021 cggagagaac agtagacggt gtctcttgcg gcaccccgct ctgtgtgatc acgaatcgcc
     1081 ccccacctag cactgccaat ggggttgcag ctgccgctct gctctccact cctggaacgg
     1141 actcctctgt ggaagccagg gagaggagga ggtcgtatct gactcctgta cgggacgagg
     1201 aagcagagtc attacggaaa gcgcgctcca gacaagctcg gcagactcgc aggtctaccc
     1261 aaggtgtaac cctgacggat ctccaggaag cagaaaggac gttcagccgg tcgagggcag
     1321 agcgtcaggc tcaggaacag cccagcccga agcccgtggg ccccagaggg ctcgacggca
     1381 gcgcccagaa gcatgagccc ctggcagccc ctgcagagga agctggggag agccgccagc
     1441 cctgggaccg gagtctggag gatcagcctg tgtatcgtcg cctgaggatt ccggctcagc
     1501 cagacaaacc catgacacca gtgtcacctc ctgccccgag accctccctc tacaccagtt
     1561 cctacctgct ccggacgggt aggtcttcag cccctgattc agagagttca gagccccccg
     1621 ccagccctgc aggggcaaag gaaatggaca gaaacgaggg cgaagaagca gatttgggtg
     1681 gtcagtcgtc taacaggctg tccattcgtg agaggaggcg gcccaaggag cgacgaagag
     1741 gcacaggcat cagcttctgg acgaaggatg aagatgaaac tgatgtctcg gaagaggtga
     1801 aagcagcgtg gcatgaacga ctttctaggt tggaattggg aggcagtgac gccagcagcg
     1861 agcgggcctc ggccagagcc cgccgggagg cccgcgaggc ccgcctggcc accctgagca
     1921 gccgcgcggg ggaagacagc agcagggact acagaaagct ctacgagagc gccctgaccg
     1981 aaaaccagaa actgaagaca aaacttcagg aggcccagct cgagctggca gacgtgaaat
     2041 ccaagcttga gaagatggcc cagcagaaac aagacaagac cgccgaccgg tcgtcggtgc
     2101 tggagatgga gaagcgggag aggcgagcct tggagcggaa gatgtcggag atggaggagg
     2161 agatgaaggt cctgacagaa ctgaaatccg acaaccagag gctgaaggac gagaatggcg
     2221 ccctcatcag ggtcatcagc aagctgtcca agtaggccag gcgctggctt cccgggacgg
     2281 cgctggcccc gcctctcccc cgccggcgcc caccggccaa gaggagccac gaggaccttt
     2341 ctctggccgt catccagttg ccacctctgc accctccgtg tcccctcctc cggcccccgc
     2401 cgctggggtt cagacagttt ccatcgaagc acgactgcga tccctcaacc gatagagcca
     2461 tctggtggag gcctgggggt cgccaggcca gccgtggacc cggcctccgg ttgccgggcc
     2521 actggtccac gtagcacttg gtccaggccc cagccctgct gccaccgcca tgcgctctga
     2581 tgtgggacac acgtggggag gtctctggag ctgccgccac tagatccaag ttgacagtga
     2641 ctccacgtcg gggcccctgc ttgtccttgc ctctcaggaa ctgacttttc tctaactccc
     2701 gccggtggtg gtggaatttt ttctaccagc aacccagtgg cacctgactg gtcttaacgc
     2761 ccgttccctc cgtgtctggc cctctcccca gggctcaggt gaccgggctt gcctcttctc
     2821 tttctgccct tttactttcc ttcctccgtc cgccccgcgg cgcgtacccc gggaggtggg
     2881 cgctgggaca gagcaccgac cccagcggtg tgcccgggca gtggcaccgc cggcctctcc
     2941 ccggccaggc cgggctcagc tccccaccgt cctccccacg cagcgtttct ctgctagaac
     3001 acccgcctgc cccacctccc tttgacctgg tctcctctcc tgaagagaag tgatgccgct
     3061 gtgaggaggc gtgggggcgt ctgaggcccc ccccttcatg ccttgtgctg tgagcgtggt
     3121 gggcttgatg gcatctgggg cgtgtccagg ggagagacga ttgtttgttc ggaagccagc
     3181 aggaggaacg agtctggact cggagtggcg agacccggtg gccaaggctg tgtcccaggg
     3241 accccacccc gctgtcaggg agcctctggc ggctgcgcct tgatcgctcg aaagctgggc
     3301 ggcttggatg agagttgagg tcttcctgag ggtccccctg taacgtgaca gccctgccgt
     3361 acctgcggct ggggaccccc aaggtgctga cgctcccctg ggcctggaag tcggtcccca
     3421 cgcgccctgc ttttcccacc tgacccgtct tggctatcct cctctggacg aaaacctgga
     3481 caggtggctc ccttggttca gcacagaatt aggtcatgag ttcttgatga tgccccagca
     3541 ttaacactta agtgtttgct ttttgtaggc gctttatccc tcggctggtt tgagtgtgca
     3601 ggtcgctttg gggttgccgg agacatttag tgtgtagcgg tccgttctca acatacgcta
     3661 cctctgtcta gtttctcttt ctttccagcc ccttccatgg ccctcagaaa cgtcacatgc
     3721 tctttaaccc agagccatga tcaaggtccc agttcgggat aggagatttg tctcgtgggg
     3781 caaaacccct ttctcagagt gtgcaaaatc ttccatgtcc ggccatttcc tgcgaggagc
     3841 gacgcctggg cacgggtgat ttgtgttgtc ggggccgggg gtgggttgcg tggggggatg
     3901 ctgagagcga agtttcatat cttccactgt agcgtttcct ttgttctggg ggaggggagc
     3961 gggcacgagg ccttggcctt gaccctgact ctccggcaca ccctgggtgc tgggccagga
     4021 ctggaaaagg aaactgaatt attaggacgt cacctggact ctcttgcatc aggcagacca
     4081 ggcagagggg ccgcagcacg ccctccgctc cgtctgtgcc tttcgggggc gcgggcggct
     4141 ctcggaaccc ggtcgggctg tgtcccgcgc ctccctccag cccttctgtg tcaggcctct
     4201 ccactcagga agccaggctc tgtggctaga gcccgtggtg tggaccagcc cgtgatctca
     4261 ggcgctctct ctcttatgca actaagtctg tgagacagac tctgaatctg gtctctttcc
     4321 aggctgtgct ggtccgcgag gtgatggtca ggggccccct cgctacctct ggggttgcgc
     4381 cctgtcaccg cggtgcctgg atgggtggtc agcgctgggg ggagggcctc gtcggccttg
     4441 gccagcggtt ttctggacag gtcgcacctc tgggagtgac aaccagcctc tgagagtctg
     4501 agtctctggc tgaagcctca ctgcttctcc ccctcgtgcc tgaggcccca ggttgggcct
     4561 tggaagggtc tgaaggaagg acgagccctg gcctgtctcc tcggcccact tgcagggcgt
     4621 cagctcctct gcttccctgc cctgagcaaa tcgtgtgcat gttagcgcca ctcggggcaa
     4681 acggcagctg gaatcccact tccaagcccg tggaccccac caaggtgtgt gtgagctacc
     4741 agcgtggagg ggagccgctc gtctccgtct ccaggtttct ggccctggag caggcctctc
     4801 ccacccagac gggcacagac agaggggctt cccagcttcc aggccaccgt gtggctccga
     4861 agggaaaacc tcggggactc agcagctggg ccagtaggga gtgggcccct ggttccatcc
     4921 gctgggtgag cgctggcgtc ctggcctcca gcaccacccc tgactctgga catggcggcc
     4981 agcggtcata ggtggtcctg cccctgtcgg ggcccagtta caagtacaga gcgtggtccc
     5041 cattacgggg ttttaaggca ggtttcagca cctcggaggg tgtgtctcct gaccttgcag
     5101 gaaggcagct gtggcggcag aacgaggccg ctgaaaggac cgggcatcgg ggcccggggc
     5161 cagcgcctgt cctgaccagc cgtgtggccg tctgtgaaag ggggctgggt cggtggtcct
     5221 caggacccct tcttggcttg agagtctgtg atgatttgtt gattcctgag accagaacat
     5281 ttctcactca gagtttttgc tctaacttca aaaattcttt tcttctcatt cagatggttt
     5341 aagagtgtgt caaggtggga aggtgaattc agtctggagg gtagtggccg tccctcctga
     5401 tggcctggtg agaatgtgca aacccgcggg ggtggaaaca cggcctctgg atgagtggtt
     5461 ctcacgggag gggcctggct cctggcgtcc agacagcaga cccgctgtgt ttccccccac
     5521 cggccactca gtctcagctc tgccttaagc accagagggc cttcctcgag gaaaccccag
     5581 cctttagttt tgtggggcca tcagatctgg acctgggctg tcgcaagccg aggtccctcc
     5641 cctgagcagg gctgcaggga gtttacacca aaggctgcag gaccgagcag cccccgggga
     5701 ggagggggag ggccagggtc tggggcccgc atccctcagc ctccaaacaa gccgaagctt
     5761 tgctcggccc ccccggatgg gtatgtagac tgtgtcaagg atggccattg atcgcttgtg
     5821 ctctgattag attgggcagt agatcagctt cactgcggcc ccgggaaccg tcattgtcac
     5881 agctgcttgg gagtgaggtg ggctcgggag aatctggacc ggcgtagcag gcgatgcagc
     5941 ccctcctgtg agggtcgtgg tcggacgtca ggttgaggag gggtcctggg agcccctcct
     6001 tgggaagtac atctagagac agacacggct gagggttggc ctgatgctgc cttaggaggt
     6061 ttcgagcttt ggggatcact cttgcttcta agcctgtgtg cgcacgcgtg tttgctacat
     6121 ggagatttca aaatgcaacc tcatcaccca gtttcatcca agtgtgttac tctgttaacg
     6181 catctctttt gcttcccccc tccattcccc agaggacgtc tctctgagct tcttctccag
     6241 ttaatctgtt catttcggac tgggaatctg ccagagtgac ctcttctgtt acttctccag
     6301 attttcccct aatgctccca gtaaactttt cctgggtggc cctttaaggt gacctcacgc
     6361 cgctcctgtc tttgcaaaat aaacacacct ttcaccctcc cgcctactct catcttcctc
     6421 cccattaatt ttttgctttt ctcacttgga gctggtggtg ctttagagga gagattgtcc
     6481 acgaatcagc cccgactcct ctggttgcaa agctgactgg ctgtgccact ttcccctcga
     6541 aggtgaggtt tggccctagc ctgggcgggg cccatgggca gcctggcctc gtctgcacag
     6601 ctagagactg agtgagtcct caggagggca ccgggcagtg tcggtgcgtc tgggacagtg
     6661 gctcatctgc tgttgccttg caggagcggg ttcaggaaag gcagggcccc gggggcctcg
     6721 ttgaagcctc gatggtctca cagaagcagg actcggggtg ggggcaggtc ctggacgtgg
     6781 ggtgctaggc tggcctctga gcctgacctg cgtcttctct ccataccgcg ctcttctggg
     6841 gagggggctc ggagggaaat acgaggggct caagccaaga cagcaggagg tgggccgcag
     6901 gggtgggggt tcccttgcac ccctgaaagg ctggggctgc tgtcaggctg gcccccaggt
     6961 gggggagggc gagactgtcc ccatgttccg ccatggggga ctctgactca ggctgcagcg
     7021 ccgtggtccc ccctcgtccc cctccgttcc ctctgcctct gtcttgatcg gtggaaagag
     7081 ctgtgagacc ctccctgggg tctccacacc cccattccag gggtagcatt ttgtctctgt
     7141 tcaccttacc cccacctgac ttcccctcca agaaagcacc agagggaccg ttttaagtcg
     7201 gctccgttgt aaatacacgt ggtggggata ggggtttagg gagggaccca gatgcgcttt
     7261 gtgagctgaa tgtattttta tgcaattctg agtggccttt caactccgag atgaatgact
     7321 ttgttttact ggttattata tagtgttatt aagtattctg tgtttgaaag tttgggaata
     7381 ataatatcca catctacatg atgcctgtaa acgcaacagt atttataaat aagtaaattg
     7441 tgttttaact ttgtgactgt gtccacagtt taggaaatgg ggtttataga accttacata
     7501 gggccagcct gtggtagttt cacgtcacca tccttgccac tgggggcctc tgtcccaggg
     7561 atggccacag gggccaagga ggagcctggg gggctcccag cctcgggggt gggcactggt
     7621 gctctcaccc cgggaggccg gggccctgag aaggtggctt ccttgggttc ccggggtctc
     7681 tgcccgctgc tccgtgcagt actgtctctg cagggccacc gctcagttca gggcagccgg
     7741 aaccactcca tggctccaga ctctaaaggc agctggtggg ggtcactgga ggctaaggtg
     7801 ctcggccgct ggcagggggg ccagggtcgg gccctccgtc cgtcctagtg caccccgtct
     7861 ggtttgctca gaccccattc acacccagcg gaggccccgt caccgagctg caggtcacgg
     7921 aggtgaggga gggaggcgtc ttctcccctg cggccaccca gctgctggcc tgcggcccaa
     7981 atcggaggca aaggatcagg tctggagtga gggctcctct gggtgcccgc tgggcccggg
     8041 gaagtcagcg gagactgggc atcgcctgga ggcggtgagg cccggccctt ccctcctgaa
     8101 gactccccag ccctcgtgct gcgctggcct tgcccccctc aatcccagcc tctgccaggc
     8161 cagccttaca ggctctgcct tctcgtccct ggagcttgcc cctgagccgg atgcccccct
     8221 ccacctgtgg cagaggggct gcgggggcct ccctgaggag atggccccca gatcgcagtg
     8281 aggacgggtc acccttccag gtctgggggc ggtgctgccc taccgtctct ttccagaaaa
     8341 tcctgaagcc ccgtcctcgg cctcaggagt cacagacgtc tgaagaagtc ggctgcggtg
     8401 agctaaccga gggcttgtag gaaccgtccc tcctctgacc ccaccccagg gccagatggt
     8461 ggccgcgccc cgagcccggc tctgctggca gcggggagcc gggggtctag tccaccccag
     8521 cccccgggag gcctcgcccc agcagctgcc ctgagggccc acgcgcccac cgcccagctg
     8581 gacctggcct ggccttctgg ttcctccagc ccctgaggga agagccgtgt ccccagcctc
     8641 accccccgcg ctgaccctgg gagcggctcc tgctccccag cccagcagga acaaccagag
     8701 accgccccca gcgtgctttc agctcattcc tttaataagg aaatgccgct tattacaaaa
     8761 gaacatgttg acaagaaatg agacaagaac agagtccacg gggctggggg cggggggggt
     8821 gctggacgtg ggtccttcct gggacggcga aggcaggggt cctggtgggg ctgcgcgtgc
     8881 cagggggcct ggggcctgcc caccatgctc ttgcagtctt cagaccccag gatttcagaa
     8941 gcagcggatc ccgccctcgc agaggaggcg ccagggcaga acatctggct tctcggaagg
     9001 ggtcctaggg tcccgatggc tgaggggggc cctacgcgcc cccggctccc gccacccccc
     9061 cagcacaagg ggcctggctc gtagcgcaca gggcccacct gcccacctgc ggcctcgtcg
     9121 gtgctcctgt cagaccccct gcatttcccc ctcctcccat cagggctggc cggaggggtc
     9181 gctcccgtgc gtggcgttcc tctgcaccgg ggcctgcggc tcctgtccct cctggttcag
     9241 cgagatggct cgggacctgg ggtcccccgg cccccttcca cctcccgccc tcccatggga
     9301 cacctggccg gggctgggct ggggcaccgg tgagggtccc tcgagccaga gccgcccagc
     9361 cgcaggagag agcatgcggg ggagcttggc ctaccgtgct ctccagcccc cggggtccct
     9421 ccccactgcc accctcggcc ccccaagccc ccagtgtcac gtgagcaggg ctggttgtcc
     9481 agctgggcgg catcagggac ctgaccacag actcggccac caacagctcc tgagaaccct
     9541 cgtcgcctgc acggggtacc cccgtggccc atccaccccc cactacgtgg agtcagactg
     9601 caacaccagg tgagggagcc gggccagcgg gggcatctgc tggggcccca ctgggagacc
     9661 tggacaccat ccgtcctcgc aacgtggggc tgggagcaga cgtgacgatg ggtgagccct
     9721 tcacgagtgt cctgagggga gccctgggag gatggctttt cagtgaattc agagagtggg
     9781 aggagggggc acaccacaca cacacacaca caggacacag ggctggacgc agggcgccga
     9841 gggtcagctc tgcccacggt cccctggtca gaccagggcc agaggccaac tccccccggc
     9901 gcgtggcagg gcaggggggc cgggagggcg aggggaagga ctttacacac aaagtcgaag
     9961 gagcagctca agttgtgtaa aacggggctg ggggcactca gcattgccat gcggttattt
    10021 acagagttga gacatgcgtc ttggtgggac gagactgggg tcgtgttcac aggtgaccac
    10081 cctctccgtg aggctcaaat ggcttcagaa ggttctcgtt ttgttgtcgc ttaaaagata
    10141 tattcttgtg tcttcaagtc acagtgtccc ccttcccaat attgcagctc aaagaatggg
    10201 tagaatcctg gtgacctgtc cctgccccct gaggctaggg gtgagggcga ggcagaagtg
    10261 gtcgcaggac tggcctgcca gacagagcat ggacggcggg gcagcctgag tttcggtaga
    10321 ctttgggagt gaaaacgcac agcctggagg cctccagaac ccctcgtagc caaccttaat
    10381 tctgtcccac tcaggacagg atcccgacac cccagaaaca agcctggtgg cagtgaaggt
    10441 gctctgtgga ctggcccggg ccctaggacc agcccacagt cttcgtcagg tcccagcttc
    10501 tcggcatcaa gtgaagaatg acttcctgag gaccgagggc cacgagcaag cctgagcccc
    10561 actgcccagc tgctgctccc ggaggagacg gcttctcacc acctgcccag ccgggaaacg
    10621 cagccgggca ggaacacacg cctgctcctt tctgacagtg aaagagacgt ccctctgcct
    10681 caggtgcccg cggacgccag ggtggctaga cggggtggga ggtgccgcca cgtgtgctgg
    10741 gaaagaggcg cagctccggg tctgggaagc cttgagtgtt ctgcgccgag gagagggcca
    10801 gggcctgcag ccgcagagac gagggcggct gaggggggcc gggggccgga tgctctcgcc
    10861 caggctgcag gtttggaagg agactcggcg cacactggac taacgtatat atggcttttt
    10921 atcgatgctg gggacacgag gtgcgcgggg aacgaggaca gtgaccgcgg ggcagaaccc
    10981 ggcccgtgtc ctccgccacc cctcggaatg gctgccctgc ccctcgggat tcacagcaag
    11041 tccctcagga atgctaggcg gggcctcccc gcagggcccc tgggaaagct cagccagctg
    11101 tccactaccc tcccctcctt acctgggcct caggggaact aagaacctgt aaaccttcct
    11161 tttcaagccc tctggctctg aacggatacc gtgtcttcag acagcgctgc tccactttga
    11221 ttaagggagg agcacaggcg ggagggtgag agatgccagt gactgctggc tcccgtccta
    11281 gaaagggagc cggcgtctgg gtctcccacc gcaagggcaa aggcccggca gtttcatttg
    11341 ggcctttccg ggaagcgggt cttctgtttc tttgcggttt gacatcaccc gtcagcaagg
    11401 tgaggtcgcg ggacggacag tccccgttcg agtccagcca gtctagcctg tagctcaggt
    11461 ctgtggtgtc ccgggaagcc cccggcagca ggaggaggtc cacgccggca gcgggctttg
    11521 gtcctggctc tgcacagtcc agtctccccg tctcgcctcc caaacagcca ctcccacgca
    11581 gcgtgggagc tccccagtcc gagcagggtt ctaagccctc tgctcccaca cggcaccctg
    11641 tctgcggccc tccacgagca cggaggatgc gcacacacgc acggatccct ggccgctggt
    11701 tgccttccgt caggagtcag gtgctgccat tccgttggtc cggaacgctc agaaaatgcc
    11761 accacttcct gccaagagag cctccctcga ggcccccggc agcgtgctga gcgcctggga
    11821 gcagaagggc agacgcatcc tcgcgaggtg acaaaggtca cacccgagag gccagcagga
    11881 ggcacctcgg gacctcagag ggagtgacgt ccggctggtg gatcttcacg taggggtctg
    11941 cgcggaggca gcgggcgagg ccctgagcac gcacccggcc cgccagcttc caggccaggg
    12001 tggccagagg tgaagcctct gggaccccgc catggctgtg gccgcctgga gctcgggccc
    12061 acagggagag cagcggaaag gcagctctca gcggggctcc ccgccccgcc ctgccctgag
    12121 gacccaaagc cgctcagaca gcctgtgtgt cccacgcatc tgacgcctgc tatccaggtc
    12181 gagggctctg ggccgcgacc ggctggcagg tgccccgcga tggcggccag aagccacgca
    12241 cacacctgaa aggcccccca cgtccatctt cttgaggttc ttggcctcca ggatgcagac
    12301 gagcgagctg ctgtcctcca agccctcggc atccctttcc ttgtgttagc gtcacagggc
    12361 aaggacctcg tgactagcaa gagggggctc ccgggcccga gagctcggcc ggcgccatgg
    12421 cacagtcgag gcttctcaga ggcgggcctc gggacccagg ctggccgcct cgcccacagc
    12481 ccggtcaggg tgctgaccct tcctccgggc gacctgagcc ccgaggtccc tccactcctc
    12541 gatgggctgc cccaggtcca cggtgttcat gggcaccttt acctccccga tgatgtcgtg
    12601 cttggagaag cggtcaaagt cgtagatggc catcaccagg gtcttgcccc ccagctcctg
    12661 gaggaagacc ttgacgtaag ggtccgaggt gccgcccatg tccagggcgg gcagctccgc
    12721 tgcctgcagg acgcccacgc cggggtgccc gccccgtgga gccctggggg ccgccccgcg
    12781 cacctggttg gcctggaagt catagtccag ggagaactgc agcttcccca ggttctccgg
    12841 ctcctcgccc tcgccctcgc cctcgccctc cgtcaggccc gtctcggcat catcgtcgtc
    12901 ctggggggct gaggagggga gggagggtca agggagaaaa ggcggggagc ctgcccccgt
    12961 gcagacccca acccagagct ggaggggctc cgtcgggccc tgcttcccct cagcccccag
    13021 cccggccctg tccctgcggg gccagcacgg cccagatgcc acgcggcttc ttgagtggcg
    13081 gagcctccct gtgacccccc accccgcccc cagctcaggc caccacgtgg gcagcacgta
    13141 ccaggcgtgc aggccgggcg tccaggccag gcgagtccac aggtgggagg agaagggaga
    13201 gagtggtaag aaaatcctgc agctcagacc agccgcatgg cagggccggg gcccccacag
    13261 gctcacacgc acacgcacgt ccacgtgcgt gctcacacac gctctcacac atgtgcacac
    13321 gcagactcaa aggccacggc ccctggctga cctcctgaga tcagccctcc ttcctccctc
    13381 cacactgatt ccttgagcaa gaaattcctc ccagaacaaa catggggaaa gtgaggtgcc
    13441 cggggcctct gcaaacttaa aaggagacac aggtacatca gggcgtcttc caggctgctc
    13501 cctgaaagat ggggagaaga gccacgtctt tgtggacgag agacggaccc acagggcccc
    13561 acaatgagga catggtccag cagccctgcc ggcaggaaac cgggtcacac gatggtggct
    13621 tcccggtggg cgggggtctc tcttcccagc attttgtccc aacggcctcc tttcgggtca
    13681 gtcaaggaca gtccctgctg acctgagcga gctcttccca cctggagagc atcgaggggc
    13741 ctctggtcac ccggccccgc ctacctggcc acccttcatg tccttcatgt tcatggcgtt
    13801 cttggcgccc ttgcccttct ccttcttgtt cttcttcttc ttccagcagc acttcttgca
    13861 gatgcagaag cagcaggtga ggagcagaag gcccaggagc accgcgatgg cgcccagcgc
    13921 ccaggggggc actgcccaca gggagacggg gtcagcggcg ctcgggcagc cccgacccct
    13981 cgaggataga aagctgggtc ggggcccggc cccgctgccg caccccgcgt tgtaaaccca
    14041 cgttaagttg catgcttcgg tgccctcccc tttctgccac cccagcaggg acagcctgtg
    14101 acagggacag cagccaggcg cacaccacgg ggccctcatc tgggctctgc tgagatctga
    14161 cggctttgac ccttggaact gtggctcaca cgaaggatgg gagggtcctc atcagacccc
    14221 ggtggggtag gaaggcccgg ccctcaggcg cagtcctgag agggctgagc ctgcgccagg
    14281 aggccgggct cagagggccc gcgggtctgg ggaagtgcgg ggaggggcgg gccgcgggcc
    14341 ggccggggct gctctccgag gtgctgaagc accgcctccc tccagtgggg ctgctccccg
    14401 aatccggacc tcgggtttct ccccacagcc tttaccagga atccaggaag cagtaggggg
    14461 ttttattttc tatcttgcaa aataaagcag ttttaaagta
//
LOCUS       XM_032653863            2141 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X15, mRNA.
ACCESSION   XM_032653863
VERSION     XM_032653863.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2141
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             100..2007
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X9"
                     /protein_id="XP_032509754.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRPPYKSQADSAAERTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTD
                     SSVEARERRRV"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaaggcc tccttacaaa tcccaggctg actccgcagc ggagagaaca
     1861 gtagacggtg tctcttgcgg caccccgctc tgtgtgatca cgaatcgccc cccacctagc
     1921 actgccaatg gggttgcagc tgccgctctg ctctccactc ctggaacgga ctcctctgtg
     1981 gaagccaggg agaggaggag ggtgtaaccc tgacggatct ccaggaagca gaaaggacgt
     2041 tcagccggtc gagggcagag cgtcaggctc aggaacagcc cagcccgaag cccgtgggcc
     2101 ccagagggct cgacggcagc gcccagaagc atgagcccct g
//
LOCUS       XM_032653869            1987 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X16, mRNA.
ACCESSION   XM_032653869
VERSION     XM_032653869.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1987
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764804"
     CDS             100..1833
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X10"
                     /protein_id="XP_032509760.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRSIKI"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaagatc catcaagata tgaaactcgc aagtctggtg cagagaaggc
     1861 ctccttacaa atcccaggct gactccgcag cggagagaac agtagacggt gtctcttgcg
     1921 gcaccccgct ctgtgtgatc acgaatcgcc ccccacctag cactgccaat ggggttgcag
     1981 ctgccgc
//
LOCUS       XM_032653876            2142 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X17, mRNA.
ACCESSION   XM_032653876
VERSION     XM_032653876.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2142
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764804"
     CDS             100..1833
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X10"
                     /protein_id="XP_032509767.1"
                     /db_xref="GeneID:116764804"
                     /translation="MAEMEHLGGKRAESARARRAEQLRRWRGSLTEQEPADRPGAELP
                     PQAQRGGPRVRFEDGAVFLAACSSGDTDEVRRLLARGADVDTANVDGLTALHQACIDE
                     NVDMVKFLVENGASVNQQDSEGWTPLHAAASCGHLNIAEYFINHGASVSVVNSEGEVP
                     SDLAEEPAVKDLLLQQVKKQGVDLEQSRKAEEQQMLQDARQWLNSGKIQDVRQARSGA
                     TALHVAAAKGYSEVLRLLTQAGYELNVQDRDGWTPLHAAAHWGVKEACSILAEALCDM
                     DVRSKLGQTPFDVADEGLVEHLEMLQKKQSVLRSEKETRNKLIESDLNSKLHGRLFKN
                     KEKLLYEEETPKPQEMEDENKESSSSSSDEDEGEDEASESETEKEAGDAETLCLQSTG
                     GHCLSQDKKPGAIVDRCNSESKSSATEQTPAPAQIISSTSSARRFSGLFNKPEEPRDE
                     SPSSWRLGLRKTGSQNVLGEAARSREALRDRGASIHRSASSPRISTVLDTREKERESR
                     SSFSALGPRRLSAASDLEEKENRESAAHLVRSGPPARQLRRDGAEGSESLQMAAPSTY
                     VTTYLKRSIKI"
     misc_feature    <283..969
                     /gene="PPP1R12B"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(298..306,310..315,325..327,334..336,361..363,
                     367..369,373..375,385..390,397..405,409..414,424..426,
                     433..435,460..462,466..468,472..474,484..489,496..504,
                     508..513,523..525,532..534,559..561)
                     /gene="PPP1R12B"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    367..462
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    466..561
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    565..840
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    844..936
                     /gene="PPP1R12B"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 agcggagcag taaagatggc cgcgcgcggg tctccgccct ccgctcccgg ctgaggcgct
       61 tggcggcggc tgcggcggcg gcccgcagca gcggcggcga tggcggagat ggagcacctg
      121 ggcgggaagc gggccgagtc ggcgcgggca cggcgggccg agcagctgcg gcgctggcgg
      181 ggctcgctga cggagcagga gcccgccgac cggccgggcg cggagctgcc gccgcaggct
      241 cagcgcgggg gcccgcgggt ccgcttcgag gacggcgccg tgttcctggc cgcctgctct
      301 agcggggaca ccgacgaggt gaggcggctc ctggcccggg gcgccgacgt ggacacggcc
      361 aacgtggacg gcctgaccgc cctgcaccag gcttgtattg atgaaaatgt ggacatggtg
      421 aagtttctgg tggagaacgg agccagtgtg aaccagcagg acagcgaggg ctggacgccc
      481 ctccacgcag cagcgtcctg tggccacctc aacatcgcgg agtatttcat taaccatgga
      541 gccagcgtga gtgttgtgaa cagtgaaggg gaagtcccct ctgacctcgc agaagagcct
      601 gccgtgaagg atcttcttct gcagcaagtg aagaagcaag gggtcgatct cgagcagtcg
      661 aggaaggcag aggaacagca gatgctgcag gacgcccgcc agtggctcaa cagcgggaaa
      721 atacaggatg tgaggcaggc gcgctcaggg gccactgccc tccatgtggc tgccgccaag
      781 ggctactctg aggtcctcag acttttgact caggctggct atgagctcaa tgtccaggac
      841 cgcgacggct ggaccccgct ccatgccgcc gcacactggg gggtgaagga ggcgtgctcc
      901 atcctggcag aagccctctg tgacatggac gtcaggagca aactgggcca gacaccgttt
      961 gatgtggctg acgagggcct cgtggagcac ctggagatgc tgcagaagaa gcagagcgtg
     1021 cttcgaagtg aaaaagagac acggaataag ctcattgagt cggatctgaa cagcaagttg
     1081 cacggtagac tctttaagaa caaagagaag ttgctctatg aggaggagac accgaagccc
     1141 caagaaatgg aggatgaaaa caaagaatcc agcagctcca gctcagacga ggacgaaggt
     1201 gaagatgagg cttctgagtc agaaaccgag aaggaggcgg gtgatgccga gaccctctgt
     1261 ctgcagagca cggggggcca ctgcttgtca caagataaaa agccgggagc catcgtcgac
     1321 cgttgcaact ctgaaagcaa gagtagtgcc acagagcaga caccagcacc agcgcagatc
     1381 atctcctcca cctcttcagc caggagattc tccggccttt tcaacaagcc ggaagagccc
     1441 agagatgagt ctccgtcttc gtggaggctg ggcctcagga agaccggcag ccagaacgtg
     1501 ctgggcgagg cggccaggtc cagggaggcc ctgcgggacc ggggcgcgtc catccaccgc
     1561 tcggcctcca gcccccgcat ctccactgtg ctggacacca gagaaaagga gcgagaaagc
     1621 agaagctctt tcagcgcact ggggccgcgg aggctgagcg ccgccagcga cctggaggag
     1681 aaggagaaca gagagtcggc tgctcacctg gtgcggagtg gcccccccgc ccgccagctg
     1741 cggagggacg gagcggaggg gagcgaatct ctgcagatgg ccgccccttc cacctacgtg
     1801 acaacctacc tgaaaagatc catcaagata tgaaactcgc aagtctggtg cagagaagtg
     1861 cgtcctgtgg tggacgtagt ggcccctcaa gcccctacct ctcagccaat cacaacccac
     1921 ctccggctgc ctcactcatt accattggtt cctccagctc tgggggcggc aggtggcagc
     1981 ccgccgcctg ctcccccgct ccactcagtg cagacactgc tgcatctgtg caccacgcag
     2041 gcctccttac aaatcccagg ctgactccgc agcggagaga acagtagacg gtgtctcttg
     2101 cggcaccccg ctctgtgtga tcacgaatcg ccccccacct ag
//
LOCUS       XM_032653884           14621 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X18, mRNA.
ACCESSION   XM_032653884
VERSION     XM_032653884.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14621
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..14621
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             667..2376
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X11"
                     /protein_id="XP_032509775.1"
                     /db_xref="GeneID:116764804"
                     /translation="MKGLQIRTTSSWYLLRWVGFEVAKRRQTRSLNQSPVCAGRQVYE
                     HLSLEKGPVAVSAATCAPPARPPTSQFMPCPGQRAGPVFCFVSVLHPQRVGCSPGAEW
                     PPRPPAAEGRSGGERISADGRPFHLRDNLPEKIHQDMKLASLVQRRPPYKSQADSAAE
                     RTVDGVSCGTPLCVITNRPPPSTANGVAAAALLSTPGTDSSVEARERRRSYLTPVRDE
                     EAESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSRAERQAQEQPSPKPVGPRGL
                     DGSAQKHEPLAAPAEEAGESRQPWDRSLEDQPVYRRLRIPAQPDKPMTPVSPPAPRPS
                     LYTSSYLLRTGRSSAPDSESSEPPASPAGAKEMDRNEGEEADLGGQSSNRLSIRERRR
                     PKERRRGTGISFWTKDEDETDVSEEVKAAWHERLSRLELGGSDASSERASARARREAR
                     EARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQEAQLELADVKSKLEKMAQQK
                     QDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELKSDNQRLKDENGALIRVISK
                     LSK"
     misc_feature    <730..1746
                     /gene="PPP1R12B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1264..1434
                     /gene="PPP1R12B"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); Region: IPD_MYPT1;
                     cd21944"
                     /db_xref="CDD:412019"
     misc_feature    2068..2373
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 ccgccctccc accccggagc cctagccctc cgcccgcgcc ttgccggtgc tgggccgtca
       61 gctcgactct cccgtgtggg ttcgctttag tccacagctg gctctgtgca catggggtct
      121 gtgtccaccg gaggctcagg cgctcctcgt gccaggacag ggcctgtccc ctggggaaca
      181 ctaaaaatgt ggttatttaa ttgaactgat caacttctaa tttgtaagta aagtcttcct
      241 catcagttaa aatgaatatg ggaatgttga ggtatcgctg catctcagag cagagcctgg
      301 gctagagccc tgcttctcaa ggtgtggtcc tccagccagc agcaccgggg ccactggaag
      361 cccgttagca atgcagagtc tcagtcccgc ccagacctgc tgaagtagat gggcgcttgc
      421 acaaagtccc ctcggtggtt gaaaggcgcg ttaaagcttc ggaaggactg ccctggggga
      481 cctccccggg ttaccagctg tggttaggaa gaggtgccag ggccgctcct ggccgtcgcc
      541 cgtgtaggaa gctgaggagg ctccttcact tgcacgcacg tcctctctgc ctcccccgtc
      601 ctgcctctgc ttactttgag cagccctgcc aggctttcta actgaggaac gaagtgaccc
      661 ctccttatga aagggctcca gatccgcacc acaagcagtt ggtacctact gagatgggtt
      721 ggctttgaag ttgctaaaag gaggcagaca cgaagcctta accagtcccc cgtctgtgcg
      781 gggagacagg tgtatgaaca cctatctctt gaaaagggcc ctgttgctgt ctctgcagcc
      841 acatgcgctc cgcctgcccg gccccccacc tcccagttta tgccgtgccc tggacagagg
      901 gcggggccag tgttttgttt tgtgtccgtc ctgcatccac agagagtcgg ctgctcacct
      961 ggtgcggagt ggcccccccg cccgccagct gcggagggac ggagcggagg ggagcgaatc
     1021 tctgcagatg gccgcccctt ccacctacgt gacaacctac ctgaaaagat ccatcaagat
     1081 atgaaactcg caagtctggt gcagagaagg cctccttaca aatcccaggc tgactccgca
     1141 gcggagagaa cagtagacgg tgtctcttgc ggcaccccgc tctgtgtgat cacgaatcgc
     1201 cccccaccta gcactgccaa tggggttgca gctgccgctc tgctctccac tcctggaacg
     1261 gactcctctg tggaagccag ggagaggagg aggtcgtatc tgactcctgt acgggacgag
     1321 gaagcagagt cattacggaa agcgcgctcc agacaagctc ggcagactcg caggtctacc
     1381 caaggtgtaa ccctgacgga tctccaggaa gcagaaagga cgttcagccg gtcgagggca
     1441 gagcgtcagg ctcaggaaca gcccagcccg aagcccgtgg gccccagagg gctcgacggc
     1501 agcgcccaga agcatgagcc cctggcagcc cctgcagagg aagctgggga gagccgccag
     1561 ccctgggacc ggagtctgga ggatcagcct gtgtatcgtc gcctgaggat tccggctcag
     1621 ccagacaaac ccatgacacc agtgtcacct cctgccccga gaccctccct ctacaccagt
     1681 tcctacctgc tccggacggg taggtcttca gcccctgatt cagagagttc agagcccccc
     1741 gccagccctg caggggcaaa ggaaatggac agaaacgagg gcgaagaagc agatttgggt
     1801 ggtcagtcgt ctaacaggct gtccattcgt gagaggaggc ggcccaagga gcgacgaaga
     1861 ggcacaggca tcagcttctg gacgaaggat gaagatgaaa ctgatgtctc ggaagaggtg
     1921 aaagcagcgt ggcatgaacg actttctagg ttggaattgg gaggcagtga cgccagcagc
     1981 gagcgggcct cggccagagc ccgccgggag gcccgcgagg cccgcctggc caccctgagc
     2041 agccgcgcgg gggaagacag cagcagggac tacagaaagc tctacgagag cgccctgacc
     2101 gaaaaccaga aactgaagac aaaacttcag gaggcccagc tcgagctggc agacgtgaaa
     2161 tccaagcttg agaagatggc ccagcagaaa caagacaaga ccgccgaccg gtcgtcggtg
     2221 ctggagatgg agaagcggga gaggcgagcc ttggagcgga agatgtcgga gatggaggag
     2281 gagatgaagg tcctgacaga actgaaatcc gacaaccaga ggctgaagga cgagaatggc
     2341 gccctcatca gggtcatcag caagctgtcc aagtaggcca ggcgctggct tcccgggacg
     2401 gcgctggccc cgcctctccc ccgccggcgc ccaccggcca agaggagcca cgaggacctt
     2461 tctctggccg tcatccagtt gccacctctg caccctccgt gtcccctcct ccggcccccg
     2521 ccgctggggt tcagacagtt tccatcgaag cacgactgcg atccctcaac cgatagagcc
     2581 atctggtgga ggcctggggg tcgccaggcc agccgtggac ccggcctccg gttgccgggc
     2641 cactggtcca cgtagcactt ggtccaggcc ccagccctgc tgccaccgcc atgcgctctg
     2701 atgtgggaca cacgtgggga ggtctctgga gctgccgcca ctagatccaa gttgacagtg
     2761 actccacgtc ggggcccctg cttgtccttg cctctcagga actgactttt ctctaactcc
     2821 cgccggtggt ggtggaattt tttctaccag caacccagtg gcacctgact ggtcttaacg
     2881 cccgttccct ccgtgtctgg ccctctcccc agggctcagg tgaccgggct tgcctcttct
     2941 ctttctgccc ttttactttc cttcctccgt ccgccccgcg gcgcgtaccc cgggaggtgg
     3001 gcgctgggac agagcaccga ccccagcggt gtgcccgggc agtggcaccg ccggcctctc
     3061 cccggccagg ccgggctcag ctccccaccg tcctccccac gcagcgtttc tctgctagaa
     3121 cacccgcctg ccccacctcc ctttgacctg gtctcctctc ctgaagagaa gtgatgccgc
     3181 tgtgaggagg cgtgggggcg tctgaggccc cccccttcat gccttgtgct gtgagcgtgg
     3241 tgggcttgat ggcatctggg gcgtgtccag gggagagacg attgtttgtt cggaagccag
     3301 caggaggaac gagtctggac tcggagtggc gagacccggt ggccaaggct gtgtcccagg
     3361 gaccccaccc cgctgtcagg gagcctctgg cggctgcgcc ttgatcgctc gaaagctggg
     3421 cggcttggat gagagttgag gtcttcctga gggtccccct gtaacgtgac agccctgccg
     3481 tacctgcggc tggggacccc caaggtgctg acgctcccct gggcctggaa gtcggtcccc
     3541 acgcgccctg cttttcccac ctgacccgtc ttggctatcc tcctctggac gaaaacctgg
     3601 acaggtggct cccttggttc agcacagaat taggtcatga gttcttgatg atgccccagc
     3661 attaacactt aagtgtttgc tttttgtagg cgctttatcc ctcggctggt ttgagtgtgc
     3721 aggtcgcttt ggggttgccg gagacattta gtgtgtagcg gtccgttctc aacatacgct
     3781 acctctgtct agtttctctt tctttccagc cccttccatg gccctcagaa acgtcacatg
     3841 ctctttaacc cagagccatg atcaaggtcc cagttcggga taggagattt gtctcgtggg
     3901 gcaaaacccc tttctcagag tgtgcaaaat cttccatgtc cggccatttc ctgcgaggag
     3961 cgacgcctgg gcacgggtga tttgtgttgt cggggccggg ggtgggttgc gtggggggat
     4021 gctgagagcg aagtttcata tcttccactg tagcgtttcc tttgttctgg gggaggggag
     4081 cgggcacgag gccttggcct tgaccctgac tctccggcac accctgggtg ctgggccagg
     4141 actggaaaag gaaactgaat tattaggacg tcacctggac tctcttgcat caggcagacc
     4201 aggcagaggg gccgcagcac gccctccgct ccgtctgtgc ctttcggggg cgcgggcggc
     4261 tctcggaacc cggtcgggct gtgtcccgcg cctccctcca gcccttctgt gtcaggcctc
     4321 tccactcagg aagccaggct ctgtggctag agcccgtggt gtggaccagc ccgtgatctc
     4381 aggcgctctc tctcttatgc aactaagtct gtgagacaga ctctgaatct ggtctctttc
     4441 caggctgtgc tggtccgcga ggtgatggtc aggggccccc tcgctacctc tggggttgcg
     4501 ccctgtcacc gcggtgcctg gatgggtggt cagcgctggg gggagggcct cgtcggcctt
     4561 ggccagcggt tttctggaca ggtcgcacct ctgggagtga caaccagcct ctgagagtct
     4621 gagtctctgg ctgaagcctc actgcttctc cccctcgtgc ctgaggcccc aggttgggcc
     4681 ttggaagggt ctgaaggaag gacgagccct ggcctgtctc ctcggcccac ttgcagggcg
     4741 tcagctcctc tgcttccctg ccctgagcaa atcgtgtgca tgttagcgcc actcggggca
     4801 aacggcagct ggaatcccac ttccaagccc gtggacccca ccaaggtgtg tgtgagctac
     4861 cagcgtggag gggagccgct cgtctccgtc tccaggtttc tggccctgga gcaggcctct
     4921 cccacccaga cgggcacaga cagaggggct tcccagcttc caggccaccg tgtggctccg
     4981 aagggaaaac ctcggggact cagcagctgg gccagtaggg agtgggcccc tggttccatc
     5041 cgctgggtga gcgctggcgt cctggcctcc agcaccaccc ctgactctgg acatggcggc
     5101 cagcggtcat aggtggtcct gcccctgtcg gggcccagtt acaagtacag agcgtggtcc
     5161 ccattacggg gttttaaggc aggtttcagc acctcggagg gtgtgtctcc tgaccttgca
     5221 ggaaggcagc tgtggcggca gaacgaggcc gctgaaagga ccgggcatcg gggcccgggg
     5281 ccagcgcctg tcctgaccag ccgtgtggcc gtctgtgaaa gggggctggg tcggtggtcc
     5341 tcaggacccc ttcttggctt gagagtctgt gatgatttgt tgattcctga gaccagaaca
     5401 tttctcactc agagtttttg ctctaacttc aaaaattctt ttcttctcat tcagatggtt
     5461 taagagtgtg tcaaggtggg aaggtgaatt cagtctggag ggtagtggcc gtccctcctg
     5521 atggcctggt gagaatgtgc aaacccgcgg gggtggaaac acggcctctg gatgagtggt
     5581 tctcacggga ggggcctggc tcctggcgtc cagacagcag acccgctgtg tttcccccca
     5641 ccggccactc agtctcagct ctgccttaag caccagaggg ccttcctcga ggaaacccca
     5701 gcctttagtt ttgtggggcc atcagatctg gacctgggct gtcgcaagcc gaggtccctc
     5761 ccctgagcag ggctgcaggg agtttacacc aaaggctgca ggaccgagca gcccccgggg
     5821 aggaggggga gggccagggt ctggggcccg catccctcag cctccaaaca agccgaagct
     5881 ttgctcggcc cccccggatg ggtatgtaga ctgtgtcaag gatggccatt gatcgcttgt
     5941 gctctgatta gattgggcag tagatcagct tcactgcggc cccgggaacc gtcattgtca
     6001 cagctgcttg ggagtgaggt gggctcggga gaatctggac cggcgtagca ggcgatgcag
     6061 cccctcctgt gagggtcgtg gtcggacgtc aggttgagga ggggtcctgg gagcccctcc
     6121 ttgggaagta catctagaga cagacacggc tgagggttgg cctgatgctg ccttaggagg
     6181 tttcgagctt tggggatcac tcttgcttct aagcctgtgt gcgcacgcgt gtttgctaca
     6241 tggagatttc aaaatgcaac ctcatcaccc agtttcatcc aagtgtgtta ctctgttaac
     6301 gcatctcttt tgcttccccc ctccattccc cagaggacgt ctctctgagc ttcttctcca
     6361 gttaatctgt tcatttcgga ctgggaatct gccagagtga cctcttctgt tacttctcca
     6421 gattttcccc taatgctccc agtaaacttt tcctgggtgg ccctttaagg tgacctcacg
     6481 ccgctcctgt ctttgcaaaa taaacacacc tttcaccctc ccgcctactc tcatcttcct
     6541 ccccattaat tttttgcttt tctcacttgg agctggtggt gctttagagg agagattgtc
     6601 cacgaatcag ccccgactcc tctggttgca aagctgactg gctgtgccac tttcccctcg
     6661 aaggtgaggt ttggccctag cctgggcggg gcccatgggc agcctggcct cgtctgcaca
     6721 gctagagact gagtgagtcc tcaggagggc accgggcagt gtcggtgcgt ctgggacagt
     6781 ggctcatctg ctgttgcctt gcaggagcgg gttcaggaaa ggcagggccc cgggggcctc
     6841 gttgaagcct cgatggtctc acagaagcag gactcggggt gggggcaggt cctggacgtg
     6901 gggtgctagg ctggcctctg agcctgacct gcgtcttctc tccataccgc gctcttctgg
     6961 ggagggggct cggagggaaa tacgaggggc tcaagccaag acagcaggag gtgggccgca
     7021 ggggtggggg ttcccttgca cccctgaaag gctggggctg ctgtcaggct ggcccccagg
     7081 tgggggaggg cgagactgtc cccatgttcc gccatggggg actctgactc aggctgcagc
     7141 gccgtggtcc cccctcgtcc ccctccgttc cctctgcctc tgtcttgatc ggtggaaaga
     7201 gctgtgagac cctccctggg gtctccacac ccccattcca ggggtagcat tttgtctctg
     7261 ttcaccttac ccccacctga cttcccctcc aagaaagcac cagagggacc gttttaagtc
     7321 ggctccgttg taaatacacg tggtggggat aggggtttag ggagggaccc agatgcgctt
     7381 tgtgagctga atgtattttt atgcaattct gagtggcctt tcaactccga gatgaatgac
     7441 tttgttttac tggttattat atagtgttat taagtattct gtgtttgaaa gtttgggaat
     7501 aataatatcc acatctacat gatgcctgta aacgcaacag tatttataaa taagtaaatt
     7561 gtgttttaac tttgtgactg tgtccacagt ttaggaaatg gggtttatag aaccttacat
     7621 agggccagcc tgtggtagtt tcacgtcacc atccttgcca ctgggggcct ctgtcccagg
     7681 gatggccaca ggggccaagg aggagcctgg ggggctccca gcctcggggg tgggcactgg
     7741 tgctctcacc ccgggaggcc ggggccctga gaaggtggct tccttgggtt cccggggtct
     7801 ctgcccgctg ctccgtgcag tactgtctct gcagggccac cgctcagttc agggcagccg
     7861 gaaccactcc atggctccag actctaaagg cagctggtgg gggtcactgg aggctaaggt
     7921 gctcggccgc tggcaggggg gccagggtcg ggccctccgt ccgtcctagt gcaccccgtc
     7981 tggtttgctc agaccccatt cacacccagc ggaggccccg tcaccgagct gcaggtcacg
     8041 gaggtgaggg agggaggcgt cttctcccct gcggccaccc agctgctggc ctgcggccca
     8101 aatcggaggc aaaggatcag gtctggagtg agggctcctc tgggtgcccg ctgggcccgg
     8161 ggaagtcagc ggagactggg catcgcctgg aggcggtgag gcccggccct tccctcctga
     8221 agactcccca gccctcgtgc tgcgctggcc ttgcccccct caatcccagc ctctgccagg
     8281 ccagccttac aggctctgcc ttctcgtccc tggagcttgc ccctgagccg gatgcccccc
     8341 tccacctgtg gcagaggggc tgcgggggcc tccctgagga gatggccccc agatcgcagt
     8401 gaggacgggt cacccttcca ggtctggggg cggtgctgcc ctaccgtctc tttccagaaa
     8461 atcctgaagc cccgtcctcg gcctcaggag tcacagacgt ctgaagaagt cggctgcggt
     8521 gagctaaccg agggcttgta ggaaccgtcc ctcctctgac cccaccccag ggccagatgg
     8581 tggccgcgcc ccgagcccgg ctctgctggc agcggggagc cgggggtcta gtccacccca
     8641 gcccccggga ggcctcgccc cagcagctgc cctgagggcc cacgcgccca ccgcccagct
     8701 ggacctggcc tggccttctg gttcctccag cccctgaggg aagagccgtg tccccagcct
     8761 caccccccgc gctgaccctg ggagcggctc ctgctcccca gcccagcagg aacaaccaga
     8821 gaccgccccc agcgtgcttt cagctcattc ctttaataag gaaatgccgc ttattacaaa
     8881 agaacatgtt gacaagaaat gagacaagaa cagagtccac ggggctgggg gcgggggggg
     8941 tgctggacgt gggtccttcc tgggacggcg aaggcagggg tcctggtggg gctgcgcgtg
     9001 ccagggggcc tggggcctgc ccaccatgct cttgcagtct tcagacccca ggatttcaga
     9061 agcagcggat cccgccctcg cagaggaggc gccagggcag aacatctggc ttctcggaag
     9121 gggtcctagg gtcccgatgg ctgagggggg ccctacgcgc ccccggctcc cgccaccccc
     9181 ccagcacaag gggcctggct cgtagcgcac agggcccacc tgcccacctg cggcctcgtc
     9241 ggtgctcctg tcagaccccc tgcatttccc cctcctccca tcagggctgg ccggaggggt
     9301 cgctcccgtg cgtggcgttc ctctgcaccg gggcctgcgg ctcctgtccc tcctggttca
     9361 gcgagatggc tcgggacctg gggtcccccg gcccccttcc acctcccgcc ctcccatggg
     9421 acacctggcc ggggctgggc tggggcaccg gtgagggtcc ctcgagccag agccgcccag
     9481 ccgcaggaga gagcatgcgg gggagcttgg cctaccgtgc tctccagccc ccggggtccc
     9541 tccccactgc caccctcggc cccccaagcc cccagtgtca cgtgagcagg gctggttgtc
     9601 cagctgggcg gcatcaggga cctgaccaca gactcggcca ccaacagctc ctgagaaccc
     9661 tcgtcgcctg cacggggtac ccccgtggcc catccacccc ccactacgtg gagtcagact
     9721 gcaacaccag gtgagggagc cgggccagcg ggggcatctg ctggggcccc actgggagac
     9781 ctggacacca tccgtcctcg caacgtgggg ctgggagcag acgtgacgat gggtgagccc
     9841 ttcacgagtg tcctgagggg agccctggga ggatggcttt tcagtgaatt cagagagtgg
     9901 gaggaggggg cacaccacac acacacacac acaggacaca gggctggacg cagggcgccg
     9961 agggtcagct ctgcccacgg tcccctggtc agaccagggc cagaggccaa ctccccccgg
    10021 cgcgtggcag ggcagggggg ccgggagggc gaggggaagg actttacaca caaagtcgaa
    10081 ggagcagctc aagttgtgta aaacggggct gggggcactc agcattgcca tgcggttatt
    10141 tacagagttg agacatgcgt cttggtggga cgagactggg gtcgtgttca caggtgacca
    10201 ccctctccgt gaggctcaaa tggcttcaga aggttctcgt tttgttgtcg cttaaaagat
    10261 atattcttgt gtcttcaagt cacagtgtcc cccttcccaa tattgcagct caaagaatgg
    10321 gtagaatcct ggtgacctgt ccctgccccc tgaggctagg ggtgagggcg aggcagaagt
    10381 ggtcgcagga ctggcctgcc agacagagca tggacggcgg ggcagcctga gtttcggtag
    10441 actttgggag tgaaaacgca cagcctggag gcctccagaa cccctcgtag ccaaccttaa
    10501 ttctgtccca ctcaggacag gatcccgaca ccccagaaac aagcctggtg gcagtgaagg
    10561 tgctctgtgg actggcccgg gccctaggac cagcccacag tcttcgtcag gtcccagctt
    10621 ctcggcatca agtgaagaat gacttcctga ggaccgaggg ccacgagcaa gcctgagccc
    10681 cactgcccag ctgctgctcc cggaggagac ggcttctcac cacctgccca gccgggaaac
    10741 gcagccgggc aggaacacac gcctgctcct ttctgacagt gaaagagacg tccctctgcc
    10801 tcaggtgccc gcggacgcca gggtggctag acggggtggg aggtgccgcc acgtgtgctg
    10861 ggaaagaggc gcagctccgg gtctgggaag ccttgagtgt tctgcgccga ggagagggcc
    10921 agggcctgca gccgcagaga cgagggcggc tgaggggggc cgggggccgg atgctctcgc
    10981 ccaggctgca ggtttggaag gagactcggc gcacactgga ctaacgtata tatggctttt
    11041 tatcgatgct ggggacacga ggtgcgcggg gaacgaggac agtgaccgcg gggcagaacc
    11101 cggcccgtgt cctccgccac ccctcggaat ggctgccctg cccctcggga ttcacagcaa
    11161 gtccctcagg aatgctaggc ggggcctccc cgcagggccc ctgggaaagc tcagccagct
    11221 gtccactacc ctcccctcct tacctgggcc tcaggggaac taagaacctg taaaccttcc
    11281 ttttcaagcc ctctggctct gaacggatac cgtgtcttca gacagcgctg ctccactttg
    11341 attaagggag gagcacaggc gggagggtga gagatgccag tgactgctgg ctcccgtcct
    11401 agaaagggag ccggcgtctg ggtctcccac cgcaagggca aaggcccggc agtttcattt
    11461 gggcctttcc gggaagcggg tcttctgttt ctttgcggtt tgacatcacc cgtcagcaag
    11521 gtgaggtcgc gggacggaca gtccccgttc gagtccagcc agtctagcct gtagctcagg
    11581 tctgtggtgt cccgggaagc ccccggcagc aggaggaggt ccacgccggc agcgggcttt
    11641 ggtcctggct ctgcacagtc cagtctcccc gtctcgcctc ccaaacagcc actcccacgc
    11701 agcgtgggag ctccccagtc cgagcagggt tctaagccct ctgctcccac acggcaccct
    11761 gtctgcggcc ctccacgagc acggaggatg cgcacacacg cacggatccc tggccgctgg
    11821 ttgccttccg tcaggagtca ggtgctgcca ttccgttggt ccggaacgct cagaaaatgc
    11881 caccacttcc tgccaagaga gcctccctcg aggcccccgg cagcgtgctg agcgcctggg
    11941 agcagaaggg cagacgcatc ctcgcgaggt gacaaaggtc acacccgaga ggccagcagg
    12001 aggcacctcg ggacctcaga gggagtgacg tccggctggt ggatcttcac gtaggggtct
    12061 gcgcggaggc agcgggcgag gccctgagca cgcacccggc ccgccagctt ccaggccagg
    12121 gtggccagag gtgaagcctc tgggaccccg ccatggctgt ggccgcctgg agctcgggcc
    12181 cacagggaga gcagcggaaa ggcagctctc agcggggctc cccgccccgc cctgccctga
    12241 ggacccaaag ccgctcagac agcctgtgtg tcccacgcat ctgacgcctg ctatccaggt
    12301 cgagggctct gggccgcgac cggctggcag gtgccccgcg atggcggcca gaagccacgc
    12361 acacacctga aaggcccccc acgtccatct tcttgaggtt cttggcctcc aggatgcaga
    12421 cgagcgagct gctgtcctcc aagccctcgg catccctttc cttgtgttag cgtcacaggg
    12481 caaggacctc gtgactagca agagggggct cccgggcccg agagctcggc cggcgccatg
    12541 gcacagtcga ggcttctcag aggcgggcct cgggacccag gctggccgcc tcgcccacag
    12601 cccggtcagg gtgctgaccc ttcctccggg cgacctgagc cccgaggtcc ctccactcct
    12661 cgatgggctg ccccaggtcc acggtgttca tgggcacctt tacctccccg atgatgtcgt
    12721 gcttggagaa gcggtcaaag tcgtagatgg ccatcaccag ggtcttgccc cccagctcct
    12781 ggaggaagac cttgacgtaa gggtccgagg tgccgcccat gtccagggcg ggcagctccg
    12841 ctgcctgcag gacgcccacg ccggggtgcc cgccccgtgg agccctgggg gccgccccgc
    12901 gcacctggtt ggcctggaag tcatagtcca gggagaactg cagcttcccc aggttctccg
    12961 gctcctcgcc ctcgccctcg ccctcgccct ccgtcaggcc cgtctcggca tcatcgtcgt
    13021 cctggggggc tgaggagggg agggagggtc aagggagaaa aggcggggag cctgcccccg
    13081 tgcagacccc aacccagagc tggaggggct ccgtcgggcc ctgcttcccc tcagccccca
    13141 gcccggccct gtccctgcgg ggccagcacg gcccagatgc cacgcggctt cttgagtggc
    13201 ggagcctccc tgtgaccccc caccccgccc ccagctcagg ccaccacgtg ggcagcacgt
    13261 accaggcgtg caggccgggc gtccaggcca ggcgagtcca caggtgggag gagaagggag
    13321 agagtggtaa gaaaatcctg cagctcagac cagccgcatg gcagggccgg ggcccccaca
    13381 ggctcacacg cacacgcacg tccacgtgcg tgctcacaca cgctctcaca catgtgcaca
    13441 cgcagactca aaggccacgg cccctggctg acctcctgag atcagccctc cttcctccct
    13501 ccacactgat tccttgagca agaaattcct cccagaacaa acatggggaa agtgaggtgc
    13561 ccggggcctc tgcaaactta aaaggagaca caggtacatc agggcgtctt ccaggctgct
    13621 ccctgaaaga tggggagaag agccacgtct ttgtggacga gagacggacc cacagggccc
    13681 cacaatgagg acatggtcca gcagccctgc cggcaggaaa ccgggtcaca cgatggtggc
    13741 ttcccggtgg gcgggggtct ctcttcccag cattttgtcc caacggcctc ctttcgggtc
    13801 agtcaaggac agtccctgct gacctgagcg agctcttccc acctggagag catcgagggg
    13861 cctctggtca cccggccccg cctacctggc cacccttcat gtccttcatg ttcatggcgt
    13921 tcttggcgcc cttgcccttc tccttcttgt tcttcttctt cttccagcag cacttcttgc
    13981 agatgcagaa gcagcaggtg aggagcagaa ggcccaggag caccgcgatg gcgcccagcg
    14041 cccagggggg cactgcccac agggagacgg ggtcagcggc gctcgggcag ccccgacccc
    14101 tcgaggatag aaagctgggt cggggcccgg ccccgctgcc gcaccccgcg ttgtaaaccc
    14161 acgttaagtt gcatgcttcg gtgccctccc ctttctgcca ccccagcagg gacagcctgt
    14221 gacagggaca gcagccaggc gcacaccacg gggccctcat ctgggctctg ctgagatctg
    14281 acggctttga cccttggaac tgtggctcac acgaaggatg ggagggtcct catcagaccc
    14341 cggtggggta ggaaggcccg gccctcaggc gcagtcctga gagggctgag cctgcgccag
    14401 gaggccgggc tcagagggcc cgcgggtctg gggaagtgcg gggaggggcg ggccgcgggc
    14461 cggccggggc tgctctccga ggtgctgaag caccgcctcc ctccagtggg gctgctcccc
    14521 gaatccggac ctcgggtttc tccccacagc ctttaccagg aatccaggaa gcagtagggg
    14581 gttttatttt ctatcttgca aaataaagca gttttaaagt a
//
LOCUS       XM_032653894           13652 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X19, mRNA.
ACCESSION   XM_032653894
VERSION     XM_032653894.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13652
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..13652
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             664..1407
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X12"
                     /protein_id="XP_032509785.1"
                     /db_xref="GeneID:116764804"
                     /translation="MTPVSPPAPRPSLYTSSYLLRTGRSSAPDSESSEPPASPAGAKE
                     MDRNEGEEADLGGQSSNRLSIRERRRPKERRRGTGISFWTKDEDETDVSEEVKAAWHE
                     RLSRLELGGSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQK
                     LKTKLQEAQLELADVKSKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEM
                     KVLTELKSDNQRLKDENGALIRVISKLSK"
     misc_feature    1099..1404
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 ctcagccaat cacaacccac ctccggctgc ctcactcatt accattggtt cctccagctc
       61 tgggggcggc aggtggcagc ccgccgcctg ctcccccgct ccactcagtg cagacactgc
      121 tgcatctgtg caccacgcag gcctccttac aaatcccagg ctgactccgc agcggagaga
      181 acagtagacg gtgtctcttg cggcaccccg ctctgtgtga tcacgaatcg ccccccacct
      241 agcactgcca atggggttgc agctgccgct ctgctctcca ctcctggaac ggactcctct
      301 gtggaagcca gggagaggag gaggtcgtat ctgactcctg tacgggacga ggaagcagag
      361 tcattacgga aagcgcgctc cagacaagct cggcagactc gcaggtctac ccaaggtgta
      421 accctgacgg atctccagga agcagaaagg acgttcagcc ggtcgagggc agagcgtcag
      481 gctcaggaac agcccagccc gaagcccgtg ggccccagag ggctcgacgg cagcgcccag
      541 aagcatgagc ccctggcagc ccctgcagag gaagctgggg agagccgcca gccctgggac
      601 cggagtctgg aggatcagcc tgtgtatcgt cgcctgagga ttccggctca gccagacaaa
      661 cccatgacac cagtgtcacc tcctgccccg agaccctccc tctacaccag ttcctacctg
      721 ctccggacgg gtaggtcttc agcccctgat tcagagagtt cagagccccc cgccagccct
      781 gcaggggcaa aggaaatgga cagaaacgag ggcgaagaag cagatttggg tggtcagtcg
      841 tctaacaggc tgtccattcg tgagaggagg cggcccaagg agcgacgaag aggcacaggc
      901 atcagcttct ggacgaagga tgaagatgaa actgatgtct cggaagaggt gaaagcagcg
      961 tggcatgaac gactttctag gttggaattg ggaggcagtg acgccagcag cgagcgggcc
     1021 tcggccagag cccgccggga ggcccgcgag gcccgcctgg ccaccctgag cagccgcgcg
     1081 ggggaagaca gcagcaggga ctacagaaag ctctacgaga gcgccctgac cgaaaaccag
     1141 aaactgaaga caaaacttca ggaggcccag ctcgagctgg cagacgtgaa atccaagctt
     1201 gagaagatgg cccagcagaa acaagacaag accgccgacc ggtcgtcggt gctggagatg
     1261 gagaagcggg agaggcgagc cttggagcgg aagatgtcgg agatggagga ggagatgaag
     1321 gtcctgacag aactgaaatc cgacaaccag aggctgaagg acgagaatgg cgccctcatc
     1381 agggtcatca gcaagctgtc caagtaggcc aggcgctggc ttcccgggac ggcgctggcc
     1441 ccgcctctcc cccgccggcg cccaccggcc aagaggagcc acgaggacct ttctctggcc
     1501 gtcatccagt tgccacctct gcaccctccg tgtcccctcc tccggccccc gccgctgggg
     1561 ttcagacagt ttccatcgaa gcacgactgc gatccctcaa ccgatagagc catctggtgg
     1621 aggcctgggg gtcgccaggc cagccgtgga cccggcctcc ggttgccggg ccactggtcc
     1681 acgtagcact tggtccaggc cccagccctg ctgccaccgc catgcgctct gatgtgggac
     1741 acacgtgggg aggtctctgg agctgccgcc actagatcca agttgacagt gactccacgt
     1801 cggggcccct gcttgtcctt gcctctcagg aactgacttt tctctaactc ccgccggtgg
     1861 tggtggaatt ttttctacca gcaacccagt ggcacctgac tggtcttaac gcccgttccc
     1921 tccgtgtctg gccctctccc cagggctcag gtgaccgggc ttgcctcttc tctttctgcc
     1981 cttttacttt ccttcctccg tccgccccgc ggcgcgtacc ccgggaggtg ggcgctggga
     2041 cagagcaccg accccagcgg tgtgcccggg cagtggcacc gccggcctct ccccggccag
     2101 gccgggctca gctccccacc gtcctcccca cgcagcgttt ctctgctaga acacccgcct
     2161 gccccacctc cctttgacct ggtctcctct cctgaagaga agtgatgccg ctgtgaggag
     2221 gcgtgggggc gtctgaggcc ccccccttca tgccttgtgc tgtgagcgtg gtgggcttga
     2281 tggcatctgg ggcgtgtcca ggggagagac gattgtttgt tcggaagcca gcaggaggaa
     2341 cgagtctgga ctcggagtgg cgagacccgg tggccaaggc tgtgtcccag ggaccccacc
     2401 ccgctgtcag ggagcctctg gcggctgcgc cttgatcgct cgaaagctgg gcggcttgga
     2461 tgagagttga ggtcttcctg agggtccccc tgtaacgtga cagccctgcc gtacctgcgg
     2521 ctggggaccc ccaaggtgct gacgctcccc tgggcctgga agtcggtccc cacgcgccct
     2581 gcttttccca cctgacccgt cttggctatc ctcctctgga cgaaaacctg gacaggtggc
     2641 tcccttggtt cagcacagaa ttaggtcatg agttcttgat gatgccccag cattaacact
     2701 taagtgtttg ctttttgtag gcgctttatc cctcggctgg tttgagtgtg caggtcgctt
     2761 tggggttgcc ggagacattt agtgtgtagc ggtccgttct caacatacgc tacctctgtc
     2821 tagtttctct ttctttccag ccccttccat ggccctcaga aacgtcacat gctctttaac
     2881 ccagagccat gatcaaggtc ccagttcggg ataggagatt tgtctcgtgg ggcaaaaccc
     2941 ctttctcaga gtgtgcaaaa tcttccatgt ccggccattt cctgcgagga gcgacgcctg
     3001 ggcacgggtg atttgtgttg tcggggccgg gggtgggttg cgtgggggga tgctgagagc
     3061 gaagtttcat atcttccact gtagcgtttc ctttgttctg ggggagggga gcgggcacga
     3121 ggccttggcc ttgaccctga ctctccggca caccctgggt gctgggccag gactggaaaa
     3181 ggaaactgaa ttattaggac gtcacctgga ctctcttgca tcaggcagac caggcagagg
     3241 ggccgcagca cgccctccgc tccgtctgtg cctttcgggg gcgcgggcgg ctctcggaac
     3301 ccggtcgggc tgtgtcccgc gcctccctcc agcccttctg tgtcaggcct ctccactcag
     3361 gaagccaggc tctgtggcta gagcccgtgg tgtggaccag cccgtgatct caggcgctct
     3421 ctctcttatg caactaagtc tgtgagacag actctgaatc tggtctcttt ccaggctgtg
     3481 ctggtccgcg aggtgatggt caggggcccc ctcgctacct ctggggttgc gccctgtcac
     3541 cgcggtgcct ggatgggtgg tcagcgctgg ggggagggcc tcgtcggcct tggccagcgg
     3601 ttttctggac aggtcgcacc tctgggagtg acaaccagcc tctgagagtc tgagtctctg
     3661 gctgaagcct cactgcttct ccccctcgtg cctgaggccc caggttgggc cttggaaggg
     3721 tctgaaggaa ggacgagccc tggcctgtct cctcggccca cttgcagggc gtcagctcct
     3781 ctgcttccct gccctgagca aatcgtgtgc atgttagcgc cactcggggc aaacggcagc
     3841 tggaatccca cttccaagcc cgtggacccc accaaggtgt gtgtgagcta ccagcgtgga
     3901 ggggagccgc tcgtctccgt ctccaggttt ctggccctgg agcaggcctc tcccacccag
     3961 acgggcacag acagaggggc ttcccagctt ccaggccacc gtgtggctcc gaagggaaaa
     4021 cctcggggac tcagcagctg ggccagtagg gagtgggccc ctggttccat ccgctgggtg
     4081 agcgctggcg tcctggcctc cagcaccacc cctgactctg gacatggcgg ccagcggtca
     4141 taggtggtcc tgcccctgtc ggggcccagt tacaagtaca gagcgtggtc cccattacgg
     4201 ggttttaagg caggtttcag cacctcggag ggtgtgtctc ctgaccttgc aggaaggcag
     4261 ctgtggcggc agaacgaggc cgctgaaagg accgggcatc ggggcccggg gccagcgcct
     4321 gtcctgacca gccgtgtggc cgtctgtgaa agggggctgg gtcggtggtc ctcaggaccc
     4381 cttcttggct tgagagtctg tgatgatttg ttgattcctg agaccagaac atttctcact
     4441 cagagttttt gctctaactt caaaaattct tttcttctca ttcagatggt ttaagagtgt
     4501 gtcaaggtgg gaaggtgaat tcagtctgga gggtagtggc cgtccctcct gatggcctgg
     4561 tgagaatgtg caaacccgcg ggggtggaaa cacggcctct ggatgagtgg ttctcacggg
     4621 aggggcctgg ctcctggcgt ccagacagca gacccgctgt gtttcccccc accggccact
     4681 cagtctcagc tctgccttaa gcaccagagg gccttcctcg aggaaacccc agcctttagt
     4741 tttgtggggc catcagatct ggacctgggc tgtcgcaagc cgaggtccct cccctgagca
     4801 gggctgcagg gagtttacac caaaggctgc aggaccgagc agcccccggg gaggaggggg
     4861 agggccaggg tctggggccc gcatccctca gcctccaaac aagccgaagc tttgctcggc
     4921 ccccccggat gggtatgtag actgtgtcaa ggatggccat tgatcgcttg tgctctgatt
     4981 agattgggca gtagatcagc ttcactgcgg ccccgggaac cgtcattgtc acagctgctt
     5041 gggagtgagg tgggctcggg agaatctgga ccggcgtagc aggcgatgca gcccctcctg
     5101 tgagggtcgt ggtcggacgt caggttgagg aggggtcctg ggagcccctc cttgggaagt
     5161 acatctagag acagacacgg ctgagggttg gcctgatgct gccttaggag gtttcgagct
     5221 ttggggatca ctcttgcttc taagcctgtg tgcgcacgcg tgtttgctac atggagattt
     5281 caaaatgcaa cctcatcacc cagtttcatc caagtgtgtt actctgttaa cgcatctctt
     5341 ttgcttcccc cctccattcc ccagaggacg tctctctgag cttcttctcc agttaatctg
     5401 ttcatttcgg actgggaatc tgccagagtg acctcttctg ttacttctcc agattttccc
     5461 ctaatgctcc cagtaaactt ttcctgggtg gccctttaag gtgacctcac gccgctcctg
     5521 tctttgcaaa ataaacacac ctttcaccct cccgcctact ctcatcttcc tccccattaa
     5581 ttttttgctt ttctcacttg gagctggtgg tgctttagag gagagattgt ccacgaatca
     5641 gccccgactc ctctggttgc aaagctgact ggctgtgcca ctttcccctc gaaggtgagg
     5701 tttggcccta gcctgggcgg ggcccatggg cagcctggcc tcgtctgcac agctagagac
     5761 tgagtgagtc ctcaggaggg caccgggcag tgtcggtgcg tctgggacag tggctcatct
     5821 gctgttgcct tgcaggagcg ggttcaggaa aggcagggcc ccgggggcct cgttgaagcc
     5881 tcgatggtct cacagaagca ggactcgggg tgggggcagg tcctggacgt ggggtgctag
     5941 gctggcctct gagcctgacc tgcgtcttct ctccataccg cgctcttctg gggagggggc
     6001 tcggagggaa atacgagggg ctcaagccaa gacagcagga ggtgggccgc aggggtgggg
     6061 gttcccttgc acccctgaaa ggctggggct gctgtcaggc tggcccccag gtgggggagg
     6121 gcgagactgt ccccatgttc cgccatgggg gactctgact caggctgcag cgccgtggtc
     6181 ccccctcgtc cccctccgtt ccctctgcct ctgtcttgat cggtggaaag agctgtgaga
     6241 ccctccctgg ggtctccaca cccccattcc aggggtagca ttttgtctct gttcacctta
     6301 cccccacctg acttcccctc caagaaagca ccagagggac cgttttaagt cggctccgtt
     6361 gtaaatacac gtggtgggga taggggttta gggagggacc cagatgcgct ttgtgagctg
     6421 aatgtatttt tatgcaattc tgagtggcct ttcaactccg agatgaatga ctttgtttta
     6481 ctggttatta tatagtgtta ttaagtattc tgtgtttgaa agtttgggaa taataatatc
     6541 cacatctaca tgatgcctgt aaacgcaaca gtatttataa ataagtaaat tgtgttttaa
     6601 ctttgtgact gtgtccacag tttaggaaat ggggtttata gaaccttaca tagggccagc
     6661 ctgtggtagt ttcacgtcac catccttgcc actgggggcc tctgtcccag ggatggccac
     6721 aggggccaag gaggagcctg gggggctccc agcctcgggg gtgggcactg gtgctctcac
     6781 cccgggaggc cggggccctg agaaggtggc ttccttgggt tcccggggtc tctgcccgct
     6841 gctccgtgca gtactgtctc tgcagggcca ccgctcagtt cagggcagcc ggaaccactc
     6901 catggctcca gactctaaag gcagctggtg ggggtcactg gaggctaagg tgctcggccg
     6961 ctggcagggg ggccagggtc gggccctccg tccgtcctag tgcaccccgt ctggtttgct
     7021 cagaccccat tcacacccag cggaggcccc gtcaccgagc tgcaggtcac ggaggtgagg
     7081 gagggaggcg tcttctcccc tgcggccacc cagctgctgg cctgcggccc aaatcggagg
     7141 caaaggatca ggtctggagt gagggctcct ctgggtgccc gctgggcccg gggaagtcag
     7201 cggagactgg gcatcgcctg gaggcggtga ggcccggccc ttccctcctg aagactcccc
     7261 agccctcgtg ctgcgctggc cttgcccccc tcaatcccag cctctgccag gccagcctta
     7321 caggctctgc cttctcgtcc ctggagcttg cccctgagcc ggatgccccc ctccacctgt
     7381 ggcagagggg ctgcgggggc ctccctgagg agatggcccc cagatcgcag tgaggacggg
     7441 tcacccttcc aggtctgggg gcggtgctgc cctaccgtct ctttccagaa aatcctgaag
     7501 ccccgtcctc ggcctcagga gtcacagacg tctgaagaag tcggctgcgg tgagctaacc
     7561 gagggcttgt aggaaccgtc cctcctctga ccccacccca gggccagatg gtggccgcgc
     7621 cccgagcccg gctctgctgg cagcggggag ccgggggtct agtccacccc agcccccggg
     7681 aggcctcgcc ccagcagctg ccctgagggc ccacgcgccc accgcccagc tggacctggc
     7741 ctggccttct ggttcctcca gcccctgagg gaagagccgt gtccccagcc tcaccccccg
     7801 cgctgaccct gggagcggct cctgctcccc agcccagcag gaacaaccag agaccgcccc
     7861 cagcgtgctt tcagctcatt cctttaataa ggaaatgccg cttattacaa aagaacatgt
     7921 tgacaagaaa tgagacaaga acagagtcca cggggctggg ggcggggggg gtgctggacg
     7981 tgggtccttc ctgggacggc gaaggcaggg gtcctggtgg ggctgcgcgt gccagggggc
     8041 ctggggcctg cccaccatgc tcttgcagtc ttcagacccc aggatttcag aagcagcgga
     8101 tcccgccctc gcagaggagg cgccagggca gaacatctgg cttctcggaa ggggtcctag
     8161 ggtcccgatg gctgaggggg gccctacgcg cccccggctc ccgccacccc cccagcacaa
     8221 ggggcctggc tcgtagcgca cagggcccac ctgcccacct gcggcctcgt cggtgctcct
     8281 gtcagacccc ctgcatttcc ccctcctccc atcagggctg gccggagggg tcgctcccgt
     8341 gcgtggcgtt cctctgcacc ggggcctgcg gctcctgtcc ctcctggttc agcgagatgg
     8401 ctcgggacct ggggtccccc ggcccccttc cacctcccgc cctcccatgg gacacctggc
     8461 cggggctggg ctggggcacc ggtgagggtc cctcgagcca gagccgccca gccgcaggag
     8521 agagcatgcg ggggagcttg gcctaccgtg ctctccagcc cccggggtcc ctccccactg
     8581 ccaccctcgg ccccccaagc ccccagtgtc acgtgagcag ggctggttgt ccagctgggc
     8641 ggcatcaggg acctgaccac agactcggcc accaacagct cctgagaacc ctcgtcgcct
     8701 gcacggggta cccccgtggc ccatccaccc cccactacgt ggagtcagac tgcaacacca
     8761 ggtgagggag ccgggccagc gggggcatct gctggggccc cactgggaga cctggacacc
     8821 atccgtcctc gcaacgtggg gctgggagca gacgtgacga tgggtgagcc cttcacgagt
     8881 gtcctgaggg gagccctggg aggatggctt ttcagtgaat tcagagagtg ggaggagggg
     8941 gcacaccaca cacacacaca cacaggacac agggctggac gcagggcgcc gagggtcagc
     9001 tctgcccacg gtcccctggt cagaccaggg ccagaggcca actccccccg gcgcgtggca
     9061 gggcaggggg gccgggaggg cgaggggaag gactttacac acaaagtcga aggagcagct
     9121 caagttgtgt aaaacggggc tgggggcact cagcattgcc atgcggttat ttacagagtt
     9181 gagacatgcg tcttggtggg acgagactgg ggtcgtgttc acaggtgacc accctctccg
     9241 tgaggctcaa atggcttcag aaggttctcg ttttgttgtc gcttaaaaga tatattcttg
     9301 tgtcttcaag tcacagtgtc ccccttccca atattgcagc tcaaagaatg ggtagaatcc
     9361 tggtgacctg tccctgcccc ctgaggctag gggtgagggc gaggcagaag tggtcgcagg
     9421 actggcctgc cagacagagc atggacggcg gggcagcctg agtttcggta gactttggga
     9481 gtgaaaacgc acagcctgga ggcctccaga acccctcgta gccaacctta attctgtccc
     9541 actcaggaca ggatcccgac accccagaaa caagcctggt ggcagtgaag gtgctctgtg
     9601 gactggcccg ggccctagga ccagcccaca gtcttcgtca ggtcccagct tctcggcatc
     9661 aagtgaagaa tgacttcctg aggaccgagg gccacgagca agcctgagcc ccactgccca
     9721 gctgctgctc ccggaggaga cggcttctca ccacctgccc agccgggaaa cgcagccggg
     9781 caggaacaca cgcctgctcc tttctgacag tgaaagagac gtccctctgc ctcaggtgcc
     9841 cgcggacgcc agggtggcta gacggggtgg gaggtgccgc cacgtgtgct gggaaagagg
     9901 cgcagctccg ggtctgggaa gccttgagtg ttctgcgccg aggagagggc cagggcctgc
     9961 agccgcagag acgagggcgg ctgagggggg ccgggggccg gatgctctcg cccaggctgc
    10021 aggtttggaa ggagactcgg cgcacactgg actaacgtat atatggcttt ttatcgatgc
    10081 tggggacacg aggtgcgcgg ggaacgagga cagtgaccgc ggggcagaac ccggcccgtg
    10141 tcctccgcca cccctcggaa tggctgccct gcccctcggg attcacagca agtccctcag
    10201 gaatgctagg cggggcctcc ccgcagggcc cctgggaaag ctcagccagc tgtccactac
    10261 cctcccctcc ttacctgggc ctcaggggaa ctaagaacct gtaaaccttc cttttcaagc
    10321 cctctggctc tgaacggata ccgtgtcttc agacagcgct gctccacttt gattaaggga
    10381 ggagcacagg cgggagggtg agagatgcca gtgactgctg gctcccgtcc tagaaaggga
    10441 gccggcgtct gggtctccca ccgcaagggc aaaggcccgg cagtttcatt tgggcctttc
    10501 cgggaagcgg gtcttctgtt tctttgcggt ttgacatcac ccgtcagcaa ggtgaggtcg
    10561 cgggacggac agtccccgtt cgagtccagc cagtctagcc tgtagctcag gtctgtggtg
    10621 tcccgggaag cccccggcag caggaggagg tccacgccgg cagcgggctt tggtcctggc
    10681 tctgcacagt ccagtctccc cgtctcgcct cccaaacagc cactcccacg cagcgtggga
    10741 gctccccagt ccgagcaggg ttctaagccc tctgctccca cacggcaccc tgtctgcggc
    10801 cctccacgag cacggaggat gcgcacacac gcacggatcc ctggccgctg gttgccttcc
    10861 gtcaggagtc aggtgctgcc attccgttgg tccggaacgc tcagaaaatg ccaccacttc
    10921 ctgccaagag agcctccctc gaggcccccg gcagcgtgct gagcgcctgg gagcagaagg
    10981 gcagacgcat cctcgcgagg tgacaaaggt cacacccgag aggccagcag gaggcacctc
    11041 gggacctcag agggagtgac gtccggctgg tggatcttca cgtaggggtc tgcgcggagg
    11101 cagcgggcga ggccctgagc acgcacccgg cccgccagct tccaggccag ggtggccaga
    11161 ggtgaagcct ctgggacccc gccatggctg tggccgcctg gagctcgggc ccacagggag
    11221 agcagcggaa aggcagctct cagcggggct ccccgccccg ccctgccctg aggacccaaa
    11281 gccgctcaga cagcctgtgt gtcccacgca tctgacgcct gctatccagg tcgagggctc
    11341 tgggccgcga ccggctggca ggtgccccgc gatggcggcc agaagccacg cacacacctg
    11401 aaaggccccc cacgtccatc ttcttgaggt tcttggcctc caggatgcag acgagcgagc
    11461 tgctgtcctc caagccctcg gcatcccttt ccttgtgtta gcgtcacagg gcaaggacct
    11521 cgtgactagc aagagggggc tcccgggccc gagagctcgg ccggcgccat ggcacagtcg
    11581 aggcttctca gaggcgggcc tcgggaccca ggctggccgc ctcgcccaca gcccggtcag
    11641 ggtgctgacc cttcctccgg gcgacctgag ccccgaggtc cctccactcc tcgatgggct
    11701 gccccaggtc cacggtgttc atgggcacct ttacctcccc gatgatgtcg tgcttggaga
    11761 agcggtcaaa gtcgtagatg gccatcacca gggtcttgcc ccccagctcc tggaggaaga
    11821 ccttgacgta agggtccgag gtgccgccca tgtccagggc gggcagctcc gctgcctgca
    11881 ggacgcccac gccggggtgc ccgccccgtg gagccctggg ggccgccccg cgcacctggt
    11941 tggcctggaa gtcatagtcc agggagaact gcagcttccc caggttctcc ggctcctcgc
    12001 cctcgccctc gccctcgccc tccgtcaggc ccgtctcggc atcatcgtcg tcctgggggg
    12061 ctgaggaggg gagggagggt caagggagaa aaggcgggga gcctgccccc gtgcagaccc
    12121 caacccagag ctggaggggc tccgtcgggc cctgcttccc ctcagccccc agcccggccc
    12181 tgtccctgcg gggccagcac ggcccagatg ccacgcggct tcttgagtgg cggagcctcc
    12241 ctgtgacccc ccaccccgcc cccagctcag gccaccacgt gggcagcacg taccaggcgt
    12301 gcaggccggg cgtccaggcc aggcgagtcc acaggtggga ggagaaggga gagagtggta
    12361 agaaaatcct gcagctcaga ccagccgcat ggcagggccg gggcccccac aggctcacac
    12421 gcacacgcac gtccacgtgc gtgctcacac acgctctcac acatgtgcac acgcagactc
    12481 aaaggccacg gcccctggct gacctcctga gatcagccct ccttcctccc tccacactga
    12541 ttccttgagc aagaaattcc tcccagaaca aacatgggga aagtgaggtg cccggggcct
    12601 ctgcaaactt aaaaggagac acaggtacat cagggcgtct tccaggctgc tccctgaaag
    12661 atggggagaa gagccacgtc tttgtggacg agagacggac ccacagggcc ccacaatgag
    12721 gacatggtcc agcagccctg ccggcaggaa accgggtcac acgatggtgg cttcccggtg
    12781 ggcgggggtc tctcttccca gcattttgtc ccaacggcct cctttcgggt cagtcaagga
    12841 cagtccctgc tgacctgagc gagctcttcc cacctggaga gcatcgaggg gcctctggtc
    12901 acccggcccc gcctacctgg ccacccttca tgtccttcat gttcatggcg ttcttggcgc
    12961 ccttgccctt ctccttcttg ttcttcttct tcttccagca gcacttcttg cagatgcaga
    13021 agcagcaggt gaggagcaga aggcccagga gcaccgcgat ggcgcccagc gcccaggggg
    13081 gcactgccca cagggagacg gggtcagcgg cgctcgggca gccccgaccc ctcgaggata
    13141 gaaagctggg tcggggcccg gccccgctgc cgcaccccgc gttgtaaacc cacgttaagt
    13201 tgcatgcttc ggtgccctcc cctttctgcc accccagcag ggacagcctg tgacagggac
    13261 agcagccagg cgcacaccac ggggccctca tctgggctct gctgagatct gacggctttg
    13321 acccttggaa ctgtggctca cacgaaggat gggagggtcc tcatcagacc ccggtggggt
    13381 aggaaggccc ggccctcagg cgcagtcctg agagggctga gcctgcgcca ggaggccggg
    13441 ctcagagggc ccgcgggtct ggggaagtgc ggggaggggc gggccgcggg ccggccgggg
    13501 ctgctctccg aggtgctgaa gcaccgcctc cctccagtgg ggctgctccc cgaatccgga
    13561 cctcgggttt ctccccacag cctttaccag gaatccagga agcagtaggg ggttttattt
    13621 tctatcttgc aaaataaagc agttttaaag ta
//
LOCUS       XM_032653903           13788 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            12B (PPP1R12B), transcript variant X20, mRNA.
ACCESSION   XM_032653903
VERSION     XM_032653903.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13788
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..13788
                     /gene="PPP1R12B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764804"
     CDS             998..1543
                     /gene="PPP1R12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B
                     isoform X13"
                     /protein_id="XP_032509794.1"
                     /db_xref="GeneID:116764804"
                     /translation="MSSLHGRGKDLARSRTAQSDSPPGSPSLTARTLRHERLSRLELG
                     GSDASSERASARARREAREARLATLSSRAGEDSSRDYRKLYESALTENQKLKTKLQEA
                     QLELADVKSKLEKMAQQKQDKTADRSSVLEMEKRERRALERKMSEMEEEMKVLTELKS
                     DNQRLKDENGALIRVISKLSK"
     misc_feature    1235..1540
                     /gene="PPP1R12B"
                     /note="cGMP-dependent protein kinase interacting domain;
                     Region: PRKG1_interact; pfam15898"
                     /db_xref="CDD:464927"
ORIGIN      
        1 tcagaggctc tgccgtccag gtctcttgtg tacggagagc ttcctctgcc gtggccggag
       61 tttcaacttg cagcttcctc ggggggcggc aggaatgacg tgtcgttaaa cttggacaaa
      121 aaagggctga aggtgctttg actgctgtgt ctgtctgggc tttgttactt agggacccag
      181 acgtggaaaa gtccccgctc tcccacgtgg cagagcgtct gagaagccgg ccgagggggt
      241 gggtgccagg ggtggtggct ttgtccctga gcccccaggg ggcccccctg aattcccaga
      301 ggccggcggg ctttcctctc ctgctgcaag tggaaacccg aattctgagt ggaaagtaca
      361 tctttgccct tggccggtgt ccagcattcc tcgctgagcg aatgggattt ggaatgtcag
      421 aggcggaggg cgggagcgtg tggggctgcg tgtttatatg tgaacgcagc ctcctctggc
      481 ttcctgaaac tgcttccttc tcctaagctc ctagtacctt atttatgtgt tgttctttgg
      541 tttttgtttt taagtcgttt aaggtgcgtt tatcacggcg gttggtcaca ggggcacttc
      601 cagaccccgt tcagccctgg agcccggctc cggggaggca gcatggtgtc cagaggattt
      661 gcgtgtcttc cctccggatg aagagacagg agctgttcgc aggctcgtcc tccgggggat
      721 ctgaggtcgt ctcctccggg gcgtgacctg ctgtcccgga acctggaccc aggttctgtg
      781 gggcacaggc ctccgtgagc ggcgcccttc gggaagactg gggccgggct gggtcggcag
      841 cggggcccag cccagcgcct gtgctggagc tggactgaga cacgcctcgt cccccatgtg
      901 actgtggact cattgactgg gtggcttcta cccttgattc agttcagctc gaaggcgcga
      961 tctgggggtg cccgaccggc tctgccgccg aggggccatg tcctccctgc acggccgagg
     1021 caaggacctc gctcggagca ggacggctca gtcggactcg cccccgggct cgccctccct
     1081 gacggccagg acgctccgac atgaacgact ttctaggttg gaattgggag gcagtgacgc
     1141 cagcagcgag cgggcctcgg ccagagcccg ccgggaggcc cgcgaggccc gcctggccac
     1201 cctgagcagc cgcgcggggg aagacagcag cagggactac agaaagctct acgagagcgc
     1261 cctgaccgaa aaccagaaac tgaagacaaa acttcaggag gcccagctcg agctggcaga
     1321 cgtgaaatcc aagcttgaga agatggccca gcagaaacaa gacaagaccg ccgaccggtc
     1381 gtcggtgctg gagatggaga agcgggagag gcgagccttg gagcggaaga tgtcggagat
     1441 ggaggaggag atgaaggtcc tgacagaact gaaatccgac aaccagaggc tgaaggacga
     1501 gaatggcgcc ctcatcaggg tcatcagcaa gctgtccaag taggccaggc gctggcttcc
     1561 cgggacggcg ctggccccgc ctctcccccg ccggcgccca ccggccaaga ggagccacga
     1621 ggacctttct ctggccgtca tccagttgcc acctctgcac cctccgtgtc ccctcctccg
     1681 gcccccgccg ctggggttca gacagtttcc atcgaagcac gactgcgatc cctcaaccga
     1741 tagagccatc tggtggaggc ctgggggtcg ccaggccagc cgtggacccg gcctccggtt
     1801 gccgggccac tggtccacgt agcacttggt ccaggcccca gccctgctgc caccgccatg
     1861 cgctctgatg tgggacacac gtggggaggt ctctggagct gccgccacta gatccaagtt
     1921 gacagtgact ccacgtcggg gcccctgctt gtccttgcct ctcaggaact gacttttctc
     1981 taactcccgc cggtggtggt ggaatttttt ctaccagcaa cccagtggca cctgactggt
     2041 cttaacgccc gttccctccg tgtctggccc tctccccagg gctcaggtga ccgggcttgc
     2101 ctcttctctt tctgcccttt tactttcctt cctccgtccg ccccgcggcg cgtaccccgg
     2161 gaggtgggcg ctgggacaga gcaccgaccc cagcggtgtg cccgggcagt ggcaccgccg
     2221 gcctctcccc ggccaggccg ggctcagctc cccaccgtcc tccccacgca gcgtttctct
     2281 gctagaacac ccgcctgccc cacctccctt tgacctggtc tcctctcctg aagagaagtg
     2341 atgccgctgt gaggaggcgt gggggcgtct gaggcccccc ccttcatgcc ttgtgctgtg
     2401 agcgtggtgg gcttgatggc atctggggcg tgtccagggg agagacgatt gtttgttcgg
     2461 aagccagcag gaggaacgag tctggactcg gagtggcgag acccggtggc caaggctgtg
     2521 tcccagggac cccaccccgc tgtcagggag cctctggcgg ctgcgccttg atcgctcgaa
     2581 agctgggcgg cttggatgag agttgaggtc ttcctgaggg tccccctgta acgtgacagc
     2641 cctgccgtac ctgcggctgg ggacccccaa ggtgctgacg ctcccctggg cctggaagtc
     2701 ggtccccacg cgccctgctt ttcccacctg acccgtcttg gctatcctcc tctggacgaa
     2761 aacctggaca ggtggctccc ttggttcagc acagaattag gtcatgagtt cttgatgatg
     2821 ccccagcatt aacacttaag tgtttgcttt ttgtaggcgc tttatccctc ggctggtttg
     2881 agtgtgcagg tcgctttggg gttgccggag acatttagtg tgtagcggtc cgttctcaac
     2941 atacgctacc tctgtctagt ttctctttct ttccagcccc ttccatggcc ctcagaaacg
     3001 tcacatgctc tttaacccag agccatgatc aaggtcccag ttcgggatag gagatttgtc
     3061 tcgtggggca aaaccccttt ctcagagtgt gcaaaatctt ccatgtccgg ccatttcctg
     3121 cgaggagcga cgcctgggca cgggtgattt gtgttgtcgg ggccgggggt gggttgcgtg
     3181 gggggatgct gagagcgaag tttcatatct tccactgtag cgtttccttt gttctggggg
     3241 aggggagcgg gcacgaggcc ttggccttga ccctgactct ccggcacacc ctgggtgctg
     3301 ggccaggact ggaaaaggaa actgaattat taggacgtca cctggactct cttgcatcag
     3361 gcagaccagg cagaggggcc gcagcacgcc ctccgctccg tctgtgcctt tcgggggcgc
     3421 gggcggctct cggaacccgg tcgggctgtg tcccgcgcct ccctccagcc cttctgtgtc
     3481 aggcctctcc actcaggaag ccaggctctg tggctagagc ccgtggtgtg gaccagcccg
     3541 tgatctcagg cgctctctct cttatgcaac taagtctgtg agacagactc tgaatctggt
     3601 ctctttccag gctgtgctgg tccgcgaggt gatggtcagg ggccccctcg ctacctctgg
     3661 ggttgcgccc tgtcaccgcg gtgcctggat gggtggtcag cgctgggggg agggcctcgt
     3721 cggccttggc cagcggtttt ctggacaggt cgcacctctg ggagtgacaa ccagcctctg
     3781 agagtctgag tctctggctg aagcctcact gcttctcccc ctcgtgcctg aggccccagg
     3841 ttgggccttg gaagggtctg aaggaaggac gagccctggc ctgtctcctc ggcccacttg
     3901 cagggcgtca gctcctctgc ttccctgccc tgagcaaatc gtgtgcatgt tagcgccact
     3961 cggggcaaac ggcagctgga atcccacttc caagcccgtg gaccccacca aggtgtgtgt
     4021 gagctaccag cgtggagggg agccgctcgt ctccgtctcc aggtttctgg ccctggagca
     4081 ggcctctccc acccagacgg gcacagacag aggggcttcc cagcttccag gccaccgtgt
     4141 ggctccgaag ggaaaacctc ggggactcag cagctgggcc agtagggagt gggcccctgg
     4201 ttccatccgc tgggtgagcg ctggcgtcct ggcctccagc accacccctg actctggaca
     4261 tggcggccag cggtcatagg tggtcctgcc cctgtcgggg cccagttaca agtacagagc
     4321 gtggtcccca ttacggggtt ttaaggcagg tttcagcacc tcggagggtg tgtctcctga
     4381 ccttgcagga aggcagctgt ggcggcagaa cgaggccgct gaaaggaccg ggcatcgggg
     4441 cccggggcca gcgcctgtcc tgaccagccg tgtggccgtc tgtgaaaggg ggctgggtcg
     4501 gtggtcctca ggaccccttc ttggcttgag agtctgtgat gatttgttga ttcctgagac
     4561 cagaacattt ctcactcaga gtttttgctc taacttcaaa aattcttttc ttctcattca
     4621 gatggtttaa gagtgtgtca aggtgggaag gtgaattcag tctggagggt agtggccgtc
     4681 cctcctgatg gcctggtgag aatgtgcaaa cccgcggggg tggaaacacg gcctctggat
     4741 gagtggttct cacgggaggg gcctggctcc tggcgtccag acagcagacc cgctgtgttt
     4801 ccccccaccg gccactcagt ctcagctctg ccttaagcac cagagggcct tcctcgagga
     4861 aaccccagcc tttagttttg tggggccatc agatctggac ctgggctgtc gcaagccgag
     4921 gtccctcccc tgagcagggc tgcagggagt ttacaccaaa ggctgcagga ccgagcagcc
     4981 cccggggagg agggggaggg ccagggtctg gggcccgcat ccctcagcct ccaaacaagc
     5041 cgaagctttg ctcggccccc ccggatgggt atgtagactg tgtcaaggat ggccattgat
     5101 cgcttgtgct ctgattagat tgggcagtag atcagcttca ctgcggcccc gggaaccgtc
     5161 attgtcacag ctgcttggga gtgaggtggg ctcgggagaa tctggaccgg cgtagcaggc
     5221 gatgcagccc ctcctgtgag ggtcgtggtc ggacgtcagg ttgaggaggg gtcctgggag
     5281 cccctccttg ggaagtacat ctagagacag acacggctga gggttggcct gatgctgcct
     5341 taggaggttt cgagctttgg ggatcactct tgcttctaag cctgtgtgcg cacgcgtgtt
     5401 tgctacatgg agatttcaaa atgcaacctc atcacccagt ttcatccaag tgtgttactc
     5461 tgttaacgca tctcttttgc ttcccccctc cattccccag aggacgtctc tctgagcttc
     5521 ttctccagtt aatctgttca tttcggactg ggaatctgcc agagtgacct cttctgttac
     5581 ttctccagat tttcccctaa tgctcccagt aaacttttcc tgggtggccc tttaaggtga
     5641 cctcacgccg ctcctgtctt tgcaaaataa acacaccttt caccctcccg cctactctca
     5701 tcttcctccc cattaatttt ttgcttttct cacttggagc tggtggtgct ttagaggaga
     5761 gattgtccac gaatcagccc cgactcctct ggttgcaaag ctgactggct gtgccacttt
     5821 cccctcgaag gtgaggtttg gccctagcct gggcggggcc catgggcagc ctggcctcgt
     5881 ctgcacagct agagactgag tgagtcctca ggagggcacc gggcagtgtc ggtgcgtctg
     5941 ggacagtggc tcatctgctg ttgccttgca ggagcgggtt caggaaaggc agggccccgg
     6001 gggcctcgtt gaagcctcga tggtctcaca gaagcaggac tcggggtggg ggcaggtcct
     6061 ggacgtgggg tgctaggctg gcctctgagc ctgacctgcg tcttctctcc ataccgcgct
     6121 cttctgggga gggggctcgg agggaaatac gaggggctca agccaagaca gcaggaggtg
     6181 ggccgcaggg gtgggggttc ccttgcaccc ctgaaaggct ggggctgctg tcaggctggc
     6241 ccccaggtgg gggagggcga gactgtcccc atgttccgcc atgggggact ctgactcagg
     6301 ctgcagcgcc gtggtccccc ctcgtccccc tccgttccct ctgcctctgt cttgatcggt
     6361 ggaaagagct gtgagaccct ccctggggtc tccacacccc cattccaggg gtagcatttt
     6421 gtctctgttc accttacccc cacctgactt cccctccaag aaagcaccag agggaccgtt
     6481 ttaagtcggc tccgttgtaa atacacgtgg tggggatagg ggtttaggga gggacccaga
     6541 tgcgctttgt gagctgaatg tatttttatg caattctgag tggcctttca actccgagat
     6601 gaatgacttt gttttactgg ttattatata gtgttattaa gtattctgtg tttgaaagtt
     6661 tgggaataat aatatccaca tctacatgat gcctgtaaac gcaacagtat ttataaataa
     6721 gtaaattgtg ttttaacttt gtgactgtgt ccacagttta ggaaatgggg tttatagaac
     6781 cttacatagg gccagcctgt ggtagtttca cgtcaccatc cttgccactg ggggcctctg
     6841 tcccagggat ggccacaggg gccaaggagg agcctggggg gctcccagcc tcgggggtgg
     6901 gcactggtgc tctcaccccg ggaggccggg gccctgagaa ggtggcttcc ttgggttccc
     6961 ggggtctctg cccgctgctc cgtgcagtac tgtctctgca gggccaccgc tcagttcagg
     7021 gcagccggaa ccactccatg gctccagact ctaaaggcag ctggtggggg tcactggagg
     7081 ctaaggtgct cggccgctgg caggggggcc agggtcgggc cctccgtccg tcctagtgca
     7141 ccccgtctgg tttgctcaga ccccattcac acccagcgga ggccccgtca ccgagctgca
     7201 ggtcacggag gtgagggagg gaggcgtctt ctcccctgcg gccacccagc tgctggcctg
     7261 cggcccaaat cggaggcaaa ggatcaggtc tggagtgagg gctcctctgg gtgcccgctg
     7321 ggcccgggga agtcagcgga gactgggcat cgcctggagg cggtgaggcc cggcccttcc
     7381 ctcctgaaga ctccccagcc ctcgtgctgc gctggccttg cccccctcaa tcccagcctc
     7441 tgccaggcca gccttacagg ctctgccttc tcgtccctgg agcttgcccc tgagccggat
     7501 gcccccctcc acctgtggca gaggggctgc gggggcctcc ctgaggagat ggcccccaga
     7561 tcgcagtgag gacgggtcac ccttccaggt ctgggggcgg tgctgcccta ccgtctcttt
     7621 ccagaaaatc ctgaagcccc gtcctcggcc tcaggagtca cagacgtctg aagaagtcgg
     7681 ctgcggtgag ctaaccgagg gcttgtagga accgtccctc ctctgacccc accccagggc
     7741 cagatggtgg ccgcgccccg agcccggctc tgctggcagc ggggagccgg gggtctagtc
     7801 caccccagcc cccgggaggc ctcgccccag cagctgccct gagggcccac gcgcccaccg
     7861 cccagctgga cctggcctgg ccttctggtt cctccagccc ctgagggaag agccgtgtcc
     7921 ccagcctcac cccccgcgct gaccctggga gcggctcctg ctccccagcc cagcaggaac
     7981 aaccagagac cgcccccagc gtgctttcag ctcattcctt taataaggaa atgccgctta
     8041 ttacaaaaga acatgttgac aagaaatgag acaagaacag agtccacggg gctgggggcg
     8101 gggggggtgc tggacgtggg tccttcctgg gacggcgaag gcaggggtcc tggtggggct
     8161 gcgcgtgcca gggggcctgg ggcctgccca ccatgctctt gcagtcttca gaccccagga
     8221 tttcagaagc agcggatccc gccctcgcag aggaggcgcc agggcagaac atctggcttc
     8281 tcggaagggg tcctagggtc ccgatggctg aggggggccc tacgcgcccc cggctcccgc
     8341 caccccccca gcacaagggg cctggctcgt agcgcacagg gcccacctgc ccacctgcgg
     8401 cctcgtcggt gctcctgtca gaccccctgc atttccccct cctcccatca gggctggccg
     8461 gaggggtcgc tcccgtgcgt ggcgttcctc tgcaccgggg cctgcggctc ctgtccctcc
     8521 tggttcagcg agatggctcg ggacctgggg tcccccggcc cccttccacc tcccgccctc
     8581 ccatgggaca cctggccggg gctgggctgg ggcaccggtg agggtccctc gagccagagc
     8641 cgcccagccg caggagagag catgcggggg agcttggcct accgtgctct ccagcccccg
     8701 gggtccctcc ccactgccac cctcggcccc ccaagccccc agtgtcacgt gagcagggct
     8761 ggttgtccag ctgggcggca tcagggacct gaccacagac tcggccacca acagctcctg
     8821 agaaccctcg tcgcctgcac ggggtacccc cgtggcccat ccacccccca ctacgtggag
     8881 tcagactgca acaccaggtg agggagccgg gccagcgggg gcatctgctg gggccccact
     8941 gggagacctg gacaccatcc gtcctcgcaa cgtggggctg ggagcagacg tgacgatggg
     9001 tgagcccttc acgagtgtcc tgaggggagc cctgggagga tggcttttca gtgaattcag
     9061 agagtgggag gagggggcac accacacaca cacacacaca ggacacaggg ctggacgcag
     9121 ggcgccgagg gtcagctctg cccacggtcc cctggtcaga ccagggccag aggccaactc
     9181 cccccggcgc gtggcagggc aggggggccg ggagggcgag gggaaggact ttacacacaa
     9241 agtcgaagga gcagctcaag ttgtgtaaaa cggggctggg ggcactcagc attgccatgc
     9301 ggttatttac agagttgaga catgcgtctt ggtgggacga gactggggtc gtgttcacag
     9361 gtgaccaccc tctccgtgag gctcaaatgg cttcagaagg ttctcgtttt gttgtcgctt
     9421 aaaagatata ttcttgtgtc ttcaagtcac agtgtccccc ttcccaatat tgcagctcaa
     9481 agaatgggta gaatcctggt gacctgtccc tgccccctga ggctaggggt gagggcgagg
     9541 cagaagtggt cgcaggactg gcctgccaga cagagcatgg acggcggggc agcctgagtt
     9601 tcggtagact ttgggagtga aaacgcacag cctggaggcc tccagaaccc ctcgtagcca
     9661 accttaattc tgtcccactc aggacaggat cccgacaccc cagaaacaag cctggtggca
     9721 gtgaaggtgc tctgtggact ggcccgggcc ctaggaccag cccacagtct tcgtcaggtc
     9781 ccagcttctc ggcatcaagt gaagaatgac ttcctgagga ccgagggcca cgagcaagcc
     9841 tgagccccac tgcccagctg ctgctcccgg aggagacggc ttctcaccac ctgcccagcc
     9901 gggaaacgca gccgggcagg aacacacgcc tgctcctttc tgacagtgaa agagacgtcc
     9961 ctctgcctca ggtgcccgcg gacgccaggg tggctagacg gggtgggagg tgccgccacg
    10021 tgtgctggga aagaggcgca gctccgggtc tgggaagcct tgagtgttct gcgccgagga
    10081 gagggccagg gcctgcagcc gcagagacga gggcggctga ggggggccgg gggccggatg
    10141 ctctcgccca ggctgcaggt ttggaaggag actcggcgca cactggacta acgtatatat
    10201 ggctttttat cgatgctggg gacacgaggt gcgcggggaa cgaggacagt gaccgcgggg
    10261 cagaacccgg cccgtgtcct ccgccacccc tcggaatggc tgccctgccc ctcgggattc
    10321 acagcaagtc cctcaggaat gctaggcggg gcctccccgc agggcccctg ggaaagctca
    10381 gccagctgtc cactaccctc ccctccttac ctgggcctca ggggaactaa gaacctgtaa
    10441 accttccttt tcaagccctc tggctctgaa cggataccgt gtcttcagac agcgctgctc
    10501 cactttgatt aagggaggag cacaggcggg agggtgagag atgccagtga ctgctggctc
    10561 ccgtcctaga aagggagccg gcgtctgggt ctcccaccgc aagggcaaag gcccggcagt
    10621 ttcatttggg cctttccggg aagcgggtct tctgtttctt tgcggtttga catcacccgt
    10681 cagcaaggtg aggtcgcggg acggacagtc cccgttcgag tccagccagt ctagcctgta
    10741 gctcaggtct gtggtgtccc gggaagcccc cggcagcagg aggaggtcca cgccggcagc
    10801 gggctttggt cctggctctg cacagtccag tctccccgtc tcgcctccca aacagccact
    10861 cccacgcagc gtgggagctc cccagtccga gcagggttct aagccctctg ctcccacacg
    10921 gcaccctgtc tgcggccctc cacgagcacg gaggatgcgc acacacgcac ggatccctgg
    10981 ccgctggttg ccttccgtca ggagtcaggt gctgccattc cgttggtccg gaacgctcag
    11041 aaaatgccac cacttcctgc caagagagcc tccctcgagg cccccggcag cgtgctgagc
    11101 gcctgggagc agaagggcag acgcatcctc gcgaggtgac aaaggtcaca cccgagaggc
    11161 cagcaggagg cacctcggga cctcagaggg agtgacgtcc ggctggtgga tcttcacgta
    11221 ggggtctgcg cggaggcagc gggcgaggcc ctgagcacgc acccggcccg ccagcttcca
    11281 ggccagggtg gccagaggtg aagcctctgg gaccccgcca tggctgtggc cgcctggagc
    11341 tcgggcccac agggagagca gcggaaaggc agctctcagc ggggctcccc gccccgccct
    11401 gccctgagga cccaaagccg ctcagacagc ctgtgtgtcc cacgcatctg acgcctgcta
    11461 tccaggtcga gggctctggg ccgcgaccgg ctggcaggtg ccccgcgatg gcggccagaa
    11521 gccacgcaca cacctgaaag gccccccacg tccatcttct tgaggttctt ggcctccagg
    11581 atgcagacga gcgagctgct gtcctccaag ccctcggcat ccctttcctt gtgttagcgt
    11641 cacagggcaa ggacctcgtg actagcaaga gggggctccc gggcccgaga gctcggccgg
    11701 cgccatggca cagtcgaggc ttctcagagg cgggcctcgg gacccaggct ggccgcctcg
    11761 cccacagccc ggtcagggtg ctgacccttc ctccgggcga cctgagcccc gaggtccctc
    11821 cactcctcga tgggctgccc caggtccacg gtgttcatgg gcacctttac ctccccgatg
    11881 atgtcgtgct tggagaagcg gtcaaagtcg tagatggcca tcaccagggt cttgcccccc
    11941 agctcctgga ggaagacctt gacgtaaggg tccgaggtgc cgcccatgtc cagggcgggc
    12001 agctccgctg cctgcaggac gcccacgccg gggtgcccgc cccgtggagc cctgggggcc
    12061 gccccgcgca cctggttggc ctggaagtca tagtccaggg agaactgcag cttccccagg
    12121 ttctccggct cctcgccctc gccctcgccc tcgccctccg tcaggcccgt ctcggcatca
    12181 tcgtcgtcct ggggggctga ggaggggagg gagggtcaag ggagaaaagg cggggagcct
    12241 gcccccgtgc agaccccaac ccagagctgg aggggctccg tcgggccctg cttcccctca
    12301 gcccccagcc cggccctgtc cctgcggggc cagcacggcc cagatgccac gcggcttctt
    12361 gagtggcgga gcctccctgt gaccccccac cccgccccca gctcaggcca ccacgtgggc
    12421 agcacgtacc aggcgtgcag gccgggcgtc caggccaggc gagtccacag gtgggaggag
    12481 aagggagaga gtggtaagaa aatcctgcag ctcagaccag ccgcatggca gggccggggc
    12541 ccccacaggc tcacacgcac acgcacgtcc acgtgcgtgc tcacacacgc tctcacacat
    12601 gtgcacacgc agactcaaag gccacggccc ctggctgacc tcctgagatc agccctcctt
    12661 cctccctcca cactgattcc ttgagcaaga aattcctccc agaacaaaca tggggaaagt
    12721 gaggtgcccg gggcctctgc aaacttaaaa ggagacacag gtacatcagg gcgtcttcca
    12781 ggctgctccc tgaaagatgg ggagaagagc cacgtctttg tggacgagag acggacccac
    12841 agggccccac aatgaggaca tggtccagca gccctgccgg caggaaaccg ggtcacacga
    12901 tggtggcttc ccggtgggcg ggggtctctc ttcccagcat tttgtcccaa cggcctcctt
    12961 tcgggtcagt caaggacagt ccctgctgac ctgagcgagc tcttcccacc tggagagcat
    13021 cgaggggcct ctggtcaccc ggccccgcct acctggccac ccttcatgtc cttcatgttc
    13081 atggcgttct tggcgccctt gcccttctcc ttcttgttct tcttcttctt ccagcagcac
    13141 ttcttgcaga tgcagaagca gcaggtgagg agcagaaggc ccaggagcac cgcgatggcg
    13201 cccagcgccc aggggggcac tgcccacagg gagacggggt cagcggcgct cgggcagccc
    13261 cgacccctcg aggatagaaa gctgggtcgg ggcccggccc cgctgccgca ccccgcgttg
    13321 taaacccacg ttaagttgca tgcttcggtg ccctcccctt tctgccaccc cagcagggac
    13381 agcctgtgac agggacagca gccaggcgca caccacgggg ccctcatctg ggctctgctg
    13441 agatctgacg gctttgaccc ttggaactgt ggctcacacg aaggatggga gggtcctcat
    13501 cagaccccgg tggggtagga aggcccggcc ctcaggcgca gtcctgagag ggctgagcct
    13561 gcgccaggag gccgggctca gagggcccgc gggtctgggg aagtgcgggg aggggcgggc
    13621 cgcgggccgg ccggggctgc tctccgaggt gctgaagcac cgcctccctc cagtggggct
    13681 gctccccgaa tccggacctc gggtttctcc ccacagcctt taccaggaat ccaggaagca
    13741 gtagggggtt ttattttcta tcttgcaaaa taaagcagtt ttaaagta
//
LOCUS       XM_032653919            1583 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin 2 (SYT2), mRNA.
ACCESSION   XM_032653919
VERSION     XM_032653919.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1583
                     /gene="SYT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 Proteins, and 82% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764923"
     CDS             82..1338
                     /gene="SYT2"
                     /codon_start=1
                     /product="synaptotagmin-2"
                     /protein_id="XP_032509810.1"
                     /db_xref="GeneID:116764923"
                     /translation="MRNIFKRNQEPMVAPTTTTTTMPAEPLDNSTESGGAREGKGDLF
                     ATLKDRFFNEMVKFPLPPWALGAIAVLLGLLLLTCCFCICKKCCWKKKKNKKEKGKGA
                     KNAMNMKDMKGGQDDDDAETGLTEGEGEGEGEEPENLGKLQFSLDYDFQANQLTVGVL
                     QAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNETFTFKVPYQELGG
                     KTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKEEPEKLGDICTS
                     LRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNP
                     YFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSSATGTELRHWSDMLA
                     NPRRPIAQWHSLKPEEEVDALLGKNK"
     misc_feature    91..420
                     /gene="SYT2"
                     /note="N-terminal domain of synaptotagmin-2 (Syt2) and
                     similar proteins; Region: Syt2_N; cd21964"
                     /db_xref="CDD:409249"
     misc_feature    order(211..213,220..225,229..237,241..246)
                     /gene="SYT2"
                     /note="Botolinum neurotoxin B binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:409249"
     misc_feature    502..861
                     /gene="SYT2"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; Region: C2A_Synaptotagmin-1-5-6-9-10;
                     cd08385"
                     /db_xref="CDD:176031"
     misc_feature    order(586..588,604..606,760..762,766..768,784..786)
                     /gene="SYT2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176031"
     misc_feature    889..1296
                     /gene="SYT2"
                     /note="C2 domain second repeat present in Synaptotagmin 1;
                     Region: C2B_Synaptotagmin-1; cd08402"
                     /db_xref="CDD:176047"
     misc_feature    order(979..981,997..999,1159..1161,1165..1167,1183..1185)
                     /gene="SYT2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176047"
ORIGIN      
        1 gagcgcggcg tcctgcccgc tgccctcgcc gagagctcgg gcacaccgcg ccggaacgtc
       61 cccggccgtc cctctgccac catgaggaac atcttcaaga ggaaccagga gcccatggtg
      121 gctcccacca ccaccaccac caccatgcct gctgagcccc tggacaactc caccgagagc
      181 ggaggcgcca gggagggcaa gggggacctg tttgccacgt tgaaggaccg attcttcaat
      241 gagatggtca agttccctct gcccccctgg gcgctgggcg ccatcgcggt gctcctgggc
      301 cttctgctcc tcacctgctg cttctgcatc tgcaagaagt gctgctggaa gaagaagaag
      361 aacaagaagg agaagggcaa gggcgccaag aacgccatga acatgaagga catgaagggt
      421 ggccaggacg acgatgatgc cgagacgggc ctgacggagg gcgagggcga gggcgagggc
      481 gaggagccgg agaacctggg gaagctgcag ttctccctgg actatgactt ccaggccaac
      541 cagctcaccg tgggcgtcct gcaggcagcg gagctgcccg ccctggacat gggcggcacc
      601 tcggaccctt acgtcaaggt cttcctcctt ccagacaaga agaagaaata tgagaccaaa
      661 gtccatcgga agacgctgaa ccccgccttc aacgagactt tcaccttcaa ggtgccctac
      721 caggagctgg ggggcaagac cctggtgatg gccatctacg actttgaccg cttctccaag
      781 cacgacatca tcggggaggt aaaggtgccc atgaacaccg tggacctggg gcagcccatc
      841 gaggagtgga gggacctgca gggcggagag aaggaggagc cggagaagct gggtgacatc
      901 tgcacctcgt tgcgctacgt gcccacggct gggaagctca ccgtctgcat cctggaggcc
      961 aagaacctca agaagatgga cgtggggggc ctttcagacc cctacgtgaa gatccacctg
     1021 atgcagaacg gcaagaggct caagaagaag aagacgacgg tgaagaagaa gaccctgaac
     1081 ccgtacttca acgagtcctt cagcttcgag atccccttcg agcagatcca gaaagtccag
     1141 gtggtggtca ccgtgctgga ttacgacaag ctgggcaaga acgaagccat tggcaagatc
     1201 ttcgtgggca gcagtgccac gggcacggag ctgcggcact ggtctgacat gctggccaac
     1261 ccccgccggc ccatcgccca gtggcactca ctcaagcccg aggaggaggt ggacgcgctg
     1321 ctgggcaaga acaagtaggg gccgcggccc gagccgctgc tgcctcagcc gggcagccct
     1381 cgaggcatcc ctgcccaccc gtgtgcggcc gtgccctcgc tcctctgccc tcgtcctctt
     1441 tctaaagacc ccctccctcc gacggtggct gaggagggcc cctcggaggt gagagaagcc
     1501 tggcccgtcg tcgccccggg agcttcctcg ctgcatgccc gccaccctcc tcctccaaag
     1561 ctccgcccag ccctcacctc gag
//
LOCUS       XM_032653931            4675 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tenascin N (TNN), mRNA.
ACCESSION   XM_032653931
VERSION     XM_032653931.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4675
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4675
                     /gene="TNN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 6%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116764929"
     CDS             1..3891
                     /gene="TNN"
                     /codon_start=1
                     /product="tenascin-N"
                     /protein_id="XP_032509822.1"
                     /db_xref="GeneID:116764929"
                     /translation="MGLQGMFCFPLGLLFGSVLLVASAPSALESTGCSEKEQQVTVSH
                     TYKIDVPKSALVQVEADPQPLRDDGASLLAPGEAEEQNIIFRHNIRLQTPQKDCELAG
                     SIQDLLARVKKLEEEMAEVKERCSAPRCCPGAAGLSHHCSGHGTFSPDTCSCHCVQGW
                     EGADCERPACPGACSGHGRCVDGRCLCEQPYVGADCAYPACAENCSGHGVCVRGVCQC
                     HEDFMSEDCSERRCPGDCSGQGFCNAGECYCEEGFTGLDCAQVVAPQGLQLLKSTEDS
                     LLVSWEPSSQVDHYLLSYYPLGKELSVKQIQVPKEQHSYEILGLLPGTKYIVTLRNVK
                     KEISSSPQHLLATTDLAVLGTAWVTDETENSLHVEWENPPTKVEYYKLQYGPLTGQEV
                     AEVTVPKSSDPKSQYDITGLQPGTEYKITVVPMRGDLEGKPILLNGRTEIDSPTNLVT
                     DRVTEDTAVVSWNPVQAVIDKYVVRYISTDRETKDTAVYREQSSTVLTGLKPGEVYKV
                     YVWAERGNQESKKADTKALTDIDSPKNLVTDQVTENTVTVSWDPVQAVIDRYLVHYTS
                     ADGDSGEVLVGKEQSSTVLTGLRPGVEYTVHVWAQKGDRESRKANTTAPTEIDSPQNL
                     VTDQVTENTATISWDPVQAVIDRYLVRYTSAEGDSREVPVGKEQSSAVLTGLRPGVEY
                     TVHVWAQKGDRESRKADTTAPTEIDSPQNLVTDQVTENTATISWDLVQAVIDRYLVCY
                     TSANGDSGEVPVGKDQSSAVLTGLRPGVEYTVHVWAQKGDQESRKADTKAPTDIDSPQ
                     NLVTDRVTENTATISWDPVQAVIDRYLVRYTSAEGDSGEVPVGKERSSAVLMGLRPGV
                     EYTVHVWAQKGDRESRKADTTAPTDIDSPKNLVTDQVTENTATVSWDPVQAVIDRYLV
                     CYTSAEGDSGEVPVGKEQSSAVLTGLRPGVEYTVHVWAQKGDRESRKADTTAPTDIDP
                     PQNLHPSAVTQSGGVLTWTPPSAQIDGYILTYQFPDGTVKEVQLGRGDQRFELQGLEQ
                     GVTLPVSLVALKGDRRSRSVSTTLSTVGARFPHPSDCSQVQQNSNVASGLYTVYLHGD
                     ASRPLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRTYVEGFGDPMREFWLGLDKLHN
                     LTTGTPTRYEVRVDLQTANESAYAIYDSFRVASSKERYRLTVGKYRGTAGDALTYHNG
                     WKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNGRYGETKHSEGVNWEPWKGHEF
                     SIPFVELKIRPHGYSGEHVLGRKKQTLGENSRTF"
     misc_feature    <505..756
                     /gene="TNN"
                     /note="MXAN_6577-like cysteine-rich domain; Region:
                     C_rich_MXAN6577; NF041328"
                     /db_xref="CDD:469225"
     misc_feature    508..591
                     /gene="TNN"
                     /note="Tenascin EGF domain; Region: EGF_Tenascin; cl46594"
                     /db_xref="CDD:480934"
     misc_feature    787..993
                     /gene="TNN"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1072..1299
                     /gene="TNN"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1228..2451
                     /gene="TNN"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    2209..>3099
                     /gene="TNN"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    3184..3819
                     /gene="TNN"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; Region: FReD; cd00087"
                     /db_xref="CDD:238040"
     misc_feature    3553..3555
                     /gene="TNN"
                     /note="gamma-gamma dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238040"
     misc_feature    order(3637..3639,3643..3645,3649..3651)
                     /gene="TNN"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238040"
     misc_feature    order(3661..3663,3670..3675,3700..3705)
                     /gene="TNN"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
ORIGIN      
        1 atgggtctcc aggggatgtt ctgcttcccc ctggggctcc tgtttggctc tgtgctcttg
       61 gtggcctcag ccccgtccgc tcttgagtct accggctgca gcgagaagga gcaacaggtc
      121 accgtcagcc acacctacaa gattgatgtg cccaagtccg ccctggtcca ggtagaggct
      181 gacccccagc ccctccgtga tgatggagcc tcactcctgg ccccagggga ggctgaggaa
      241 cagaacatca tcttcaggca caacatccgc ctgcagacgc cccagaagga ctgcgagtta
      301 gcaggcagca tccaggacct cctggctcgg gtgaagaagc tggaggaaga gatggcggag
      361 gtgaaggagc ggtgtagtgc cccgcgctgc tgcccgggag ctgctggtct gagtcaccac
      421 tgcagcggcc acgggacctt ctccccggac acctgcagct gccactgtgt gcagggctgg
      481 gagggcgccg actgcgagcg gcccgcctgc cccggcgcat gcagcggcca cgggcgctgc
      541 gtggacggcc gctgcctgtg cgagcagccc tacgtggggg ccgactgcgc ctaccccgcc
      601 tgcgcggaaa actgcagcgg gcacggcgtg tgcgtgcgcg gcgtctgtca gtgccacgag
      661 gacttcatgt ctgaggactg cagcgagcgg cgctgccccg gcgactgcag cggccaaggc
      721 ttctgcaacg cgggcgagtg ctactgcgag gagggcttca caggcctcga ctgcgcccag
      781 gtggtcgccc cccagggtct gcagctgctc aaaagcacag aggattccct gctggtgagc
      841 tgggagccct ccagccaggt ggaccactac ctcctcagct actaccccct ggggaaggag
      901 ctctctgtca agcagatcca agtgcccaag gagcagcaca gctatgagat ccttggcttg
      961 ctgcctggaa ccaagtacat agtcaccctg cgcaacgtga agaaagagat ttccagcagc
     1021 ccacagcacc tacttgccac cacagatctt gctgtgcttg gcactgcctg ggtgacggat
     1081 gagactgaga actccctcca cgtggagtgg gagaaccccc cgaccaaggt ggaatactac
     1141 aagctgcagt atggccccct gacagggcaa gaggtggccg aggtcaccgt gcccaagagc
     1201 agtgacccca agagccaata tgacatcacg ggtctgcagc ccgggacaga atataagatc
     1261 acagtcgtcc ccatgagggg agacctcgag ggcaagccga ttctcctgaa tggcaggaca
     1321 gagattgata gcccaaccaa tttggtcact gatcgagtga cagaagacac agcggtggtc
     1381 tcctggaacc cagtccaggc tgtcattgat aagtatgtgg tgcgctacat ctccactgat
     1441 agggagacga aggacacagc tgtgtacagg gagcagagca gcaccgtcct gacaggcctg
     1501 aagccgggag aggtgtacaa agtctacgtg tgggctgaga ggggcaacca ggagagcaag
     1561 aaggccgaca ccaaggccct cacagacatt gacagcccca aaaacctagt gaccgaccag
     1621 gtgacagaga acacggtcac cgtctcctgg gacccggtgc aggccgtgat tgacagatac
     1681 ctggtgcact acacctctgc tgatggagac tccggggagg tcctggtggg gaaggagcag
     1741 agcagcaccg tcctgacggg cctgaggccg ggcgtggagt acacggtgca cgtgtgggcc
     1801 cagaaggggg accgggagag caggaaggcc aacaccacgg ccccgacaga aatcgacagc
     1861 ccccaaaacc tggtgactga ccaggtgaca gagaacacgg ccaccatctc ctgggacccg
     1921 gtgcaggccg tcatcgacag gtacctggtg cgctacacct ctgctgaagg agactccagg
     1981 gaggttccag tggggaagga gcagagcagc gccgtcctga cgggcctgag gccgggcgtg
     2041 gagtacacgg tgcatgtgtg ggcccagaag ggggaccggg agagcaggaa ggctgacacc
     2101 acggccccga cagaaattga cagcccccaa aacctggtga ctgaccaggt gacagagaac
     2161 acggccacca tctcctggga cctggtgcag gccgtcatcg acaggtacct ggtgtgctac
     2221 acctctgcta atggagactc cggggaggtt ccagtgggga aggatcagag cagcgctgtt
     2281 ctgacgggcc tgaggccggg cgtggagtac acggtgcacg tgtgggccca gaagggggac
     2341 caggagagca ggaaggccga caccaaggct ccaacagaca ttgacagccc ccaaaacctg
     2401 gtgaccgacc gggtgacaga gaacacggcc accatctcct gggacccggt gcaggccgtc
     2461 atcgacaggt acctggtgcg ctacacctct gctgaaggag actctgggga ggttccggtg
     2521 gggaaggagc ggagcagcgc cgtcctgatg ggcctgaggc cgggcgtgga gtacacggtg
     2581 cacgtgtggg cccagaaggg ggaccgggag agcaggaagg ccgacaccac agccccgaca
     2641 gacattgaca gccccaaaaa cctggtgacc gaccaggtga cagagaacac ggccaccgtc
     2701 tcctgggacc cggtgcaggc cgtgattgac aggtacctgg tgtgctacac ctctgctgaa
     2761 ggagactccg gggaggttcc ggtggggaag gagcagagca gcgccgtcct gacgggcctg
     2821 aggccgggcg tggagtacac ggtgcacgtg tgggcccaga agggggaccg ggagagcagg
     2881 aaggccgaca ccacagcccc gacagacatt gaccctcccc aaaaccttca tccatctgct
     2941 gtaacacagt ctggtggggt attgacctgg acacccccct ctgctcagat cgatggctat
     3001 attctgacct accaattccc agatggcact gtcaaggagg tgcagcttgg aagaggggac
     3061 cagaggtttg agttgcaagg ccttgagcag ggtgtcaccc tccctgtctc cttggttgcc
     3121 ttgaagggtg atcgccggag caggagtgta tccaccaccc tttccacagt tggtgcccgt
     3181 tttccacacc cttcggactg cagtcaagtt cagcagaata gcaacgtcgc cagtggtctc
     3241 tacaccgtct acctgcacgg ggatgccagt cggcccctgc aggtgtactg tgacatggac
     3301 acggatggag gtggctggat cgtcttccag aggcggaaca ctgggcagct ggatttcttc
     3361 aagcgctggc ggacctacgt ggaaggcttc ggggacccca tgagggagtt ctggcttgga
     3421 ctcgacaagc tacacaacct caccacaggc acgcccaccc gctatgaggt gagagtggac
     3481 ttacagactg ccaacgaatc tgcctatgcc atatatgact ccttccgagt agcctccagc
     3541 aaggagcggt acaggctgac agttgggaaa tacagaggca cagcagggga cgctcttact
     3601 taccacaatg gatggaagtt tacaaccttt gacagagaca atgatatcgc cctcagcaac
     3661 tgtgccctga cgcatcatgg cggctggtgg tacaagaact gccacttggc caaccctaat
     3721 ggcagatacg gggagaccaa gcatagtgag ggggtgaact gggagccatg gaaaggacat
     3781 gagttctcca ttccttttgt ggagttgaag atccgccctc atggctacag cggggaacat
     3841 gtcctgggca gaaagaagca aacactggga gaaaattcga gaacattctg acggcccatt
     3901 catgcactta ttgcacaaga ggagaccagc ccggggttgg ggcctgtgta agcatggggt
     3961 ggggtgggta ctaatgactg gctaatggaa gtctgagggg tgctcatagc ccttggcttc
     4021 tgagatggct cgataacctg caggacaaag catgtcacca agcttccaac cacatagctc
     4081 acttccttgt cacctgcatt ttgcccacct gtattgtggg cctgaaaatc aacacaaaaa
     4141 tagctgcaca atgtgtatgg gcaagacagc actggaactg caaggttttc tgctctatct
     4201 tcagtaacaa acatacggga ttagggcaaa aaaaaaaggg gcggcggata aagaatcacc
     4261 tagtgcttct tcaattggaa atctctggaa atttgtatat atatatgcag ggctctgcta
     4321 atacaaatct tctgtctaaa aagaaacacc aaaggggtgt ttgacgacaa ggggctgagg
     4381 tagcctgaaa cttaccttcc attaccactg gaaaattggt aaaatctttt ttgaggaaaa
     4441 agacataaat cttccccttt taaaaataat tgctgatgtt atgaggaaga ataaagggaa
     4501 ccaaaaggga ccaagaggga tttgaatttt gctgtgttct gaccagtttc cggcgtgctg
     4561 gaaaccccag cttccaggtc actgttattt ttaagtgccc cctttccagc cacctgcatt
     4621 atcactcttg tagatctgcg tatgttgtga ataaattctc acttatttca acttt
//
LOCUS       XR_004353090             736 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764934
            (LOC116764934), ncRNA.
ACCESSION   XR_004353090
VERSION     XR_004353090.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..736
                     /gene="LOC116764934"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116764934"
     ncRNA           1..736
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764934"
                     /product="uncharacterized LOC116764934"
                     /db_xref="GeneID:116764934"
ORIGIN      
        1 catttggttg ggaaatgact gaaccaggcc agttttggta gctccgcttc cccctgggtg
       61 gggcagcaac cccaataaaa agggcctctg ctgcacgaca gctatcctcc tgctactcga
      121 gttccgattg actttggaga acctgatata aagattccag aaagatgtct tctcaagagc
      181 agcagtgcaa gcagcagtgc aagatacctc cagtgtgccc aacacagtgc cctgatcctt
      241 gctcacctaa aaagggtaca gacccttgcc cacctataaa gtgcactgag aaatgcactc
      301 ctgtgccacc tccccagcaa tgccagcaga agtgcccacc caaggacaag taacagcttc
      361 aggttttatc tgcctctgga aaggataagc acaatcagct catctagttc cacagctcca
      421 ccttcatctt ctcttcaaag cctatcatgg atacagaaga agctttccac ccttcagcct
      481 gcagtgtgcg ttggggattc ctgacggaca gaggtttcct atctgagtct gctatgctga
      541 ttccctctgg gaggtgtccg aaaaagcatc ccagagcctc agagggaagg gcagtatctc
      601 tcctcttgag tgtcctctga ggattctctc agagtcttct gtgtgtatct gtcacatggg
      661 cagtggtttc tgccagatga gcagttgtta cttatcctcc atttcctgaa taaaatacaa
      721 ttttttttgg ggatgg
//
LOCUS       XM_032653950            1757 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus migration and invasion inhibitory protein
            (MIIP), transcript variant X1, mRNA.
ACCESSION   XM_032653950
VERSION     XM_032653950.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1757
                     /gene="MIIP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764939"
     CDS             181..1452
                     /gene="MIIP"
                     /codon_start=1
                     /product="migration and invasion-inhibitory protein
                     isoform X1"
                     /protein_id="XP_032509841.1"
                     /db_xref="GeneID:116764939"
                     /translation="MVETRDLAQLRQLNLELLRQLWVGQDAVRRSVAKAASESSLGSS
                     SSYNSEMPSSQETSSVASRASPQDAHQGDPCDRDGASSGVVSLPPAKCLHQESPGPLR
                     PRSAPLLATSDSSDPELSAELESLDTQEAQALKSLLAQRSKLSEPRVTNKESPVPEKS
                     WRLRPCLGYDWIAGVAGPRAQGHGWRPQLASAPACAPSGRCCSFSDCFTPLGSPDNSS
                     PVTSKPEAFFSKLQKFREANKEECICSDPESQFLGLQESSAAEGDHECVYCYCVNRRL
                     FLVPSDPRTPCRLCRTPRGQRGPETLAEPAQVRVSIPLSVLDPPHRYRIHRRKSFDAS
                     DTLALPRHCLLGWDILPPKSEKSSAPKSLDLWSSVSSEAQRRKLSATSPSHRVRSRVP
                     WERQMPWSSLGTAESWRAGLGPCQRGSQPPP"
     misc_feature    328..1356
                     /gene="MIIP"
                     /note="Migration and invasion-inhibitory; Region: MIIP;
                     pfam15734"
                     /db_xref="CDD:464831"
ORIGIN      
        1 aaggccccgc cccctgccgc cgaaccgtag ggtggcctgt gcggaactac cggcggcgca
       61 ggcggcggtg ggctgcgcgg ctctggggct tcctggaggt aggagaactt ggccgtgagg
      121 gcactctatg gcccgggagt tggtgacacc tgtcgtggga agccagtgga tacgcctggg
      181 atggtggaga ccagagatct ggcacagcta cggcagctca acctggagct cctgaggcag
      241 ctgtgggtcg gacaggatgc cgtgcggcgg tccgtggcca aggcagcctc agagtcaagc
      301 ctgggctcca gcagcagcta caactcagag atgccgtcat cccaagagac gtcctcagtg
      361 gcctcgagag cctccccaca ggatgcccac caaggtgacc cctgtgatag ggacggggcc
      421 agctccgggg tggtctctct tccacctgcc aagtgcctcc accaggagtc cccgggccca
      481 ctgaggcccc gctcggctcc cttgctggcc acctcagact cgagcgaccc agagctttca
      541 gcagagctgg agagtctaga cacccaggag gcacaggccc tgaagtccct cctggctcaa
      601 cggagcaagc tgtccgagcc gagagtgacc aacaaggagt ctccagtgcc tgagaagagc
      661 tggcgcctca gaccgtgcct gggctacgac tggattgcag gtgtggctgg cccccgtgcc
      721 cagggacacg ggtggaggcc ccagcttgct tctgcacctg cctgcgcccc cagcgggcgc
      781 tgctgctctt tctccgactg tttcaccccc ctcgggtctc cggacaatag ctctcccgtc
      841 accagcaagc ccgaggcctt cttctcgaag ctgcagaagt tccgggaagc caacaaggag
      901 gagtgtattt gcagtgaccc tgaatcccag ttcctaggcc tgcaggagag tagtgctgcg
      961 gagggggacc acgaatgtgt gtattgttac tgtgtcaacc ggcgcctgtt tctggtgcct
     1021 tcggatcccc gcaccccctg ccgcctgtgc cggacaccac ggggccagcg gggtccagag
     1081 accctggcag agccagcgca ggtcagggtg agcatcccgc tgtctgtcct ggaccccccg
     1141 caccggtacc gcatccaccg gcggaagagc ttcgacgcct ccgacacgct ggcgctgccc
     1201 cggcactgcc tgctgggctg ggacattctt cctccgaagt ctgagaaaag ctcagccccc
     1261 aagagcctgg acctctggtc cagtgtctct tctgaggccc aacgtcggaa gctgtcagcc
     1321 accagccctt ctcaccgggt acgatccagg gtgccctggg agagacagat gccttggagc
     1381 agcctgggga ccgcagagtc ctggagggca ggattggggc cgtgccaacg cgggtcccag
     1441 cccccaccct aatctggtca gaaccctcca tgccccagcc ccgtgccgcc cggccgaagc
     1501 cctgaggact ggccactggg aggtggacag tgcccctacc gtcgtttcag cctctctcct
     1561 ccggcagggg cgcccacgag aggggagctt tgcccagcct cagctggagg tggactctgg
     1621 ccctaccttc ctaggctggg ccggtgggtg gcctcaggcc tgtctccttc ctggggacag
     1681 atgagaccct ggggttggga agaggggctt ctgtgacacg tttgtaaata aagctcagca
     1741 ctccctgcag ctccaga
//
LOCUS       XM_032653960            1677 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus migration and invasion inhibitory protein
            (MIIP), transcript variant X2, mRNA.
ACCESSION   XM_032653960
VERSION     XM_032653960.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1677
                     /gene="MIIP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764939"
     CDS             181..1425
                     /gene="MIIP"
                     /codon_start=1
                     /product="migration and invasion-inhibitory protein
                     isoform X2"
                     /protein_id="XP_032509851.1"
                     /db_xref="GeneID:116764939"
                     /translation="MVETRDLAQLRQLNLELLRQLWVGQDAVRRSVAKAASESSLGSS
                     SSYNSEMPSSQETSSVASRASPQDAHQGDPCDRDGASSGVVSLPPAKCLHQESPGPLR
                     PRSAPLLATSDSSDPELSAELESLDTQEAQALKSLLAQRSKLSEPRVTNKESPVPEKS
                     WRLRPCLGYDWIAGVAGPRAQGHGWRPQLASAPACAPSGRCCSFSDCFTPLGSPDNSS
                     PVTSKPEAFFSKLQKFREANKEECICSDPESQFLGLQESSAAEGDHECVYCYCVNRRL
                     FLVPSDPRTPCRLCRTPRGQRGPETLAEPAQVRVSIPLSVLDPPHRYRIHRRKSFDAS
                     DTLALPRHCLLGWDILPPKSEKSSAPKSLDLWSSVSSEAQRRKLSATSPSHRAVPTRV
                     PAPTLIWSEPSMPQPRAARPKP"
     misc_feature    328..1389
                     /gene="MIIP"
                     /note="Migration and invasion-inhibitory; Region: MIIP;
                     pfam15734"
                     /db_xref="CDD:464831"
ORIGIN      
        1 aaggccccgc cccctgccgc cgaaccgtag ggtggcctgt gcggaactac cggcggcgca
       61 ggcggcggtg ggctgcgcgg ctctggggct tcctggaggt aggagaactt ggccgtgagg
      121 gcactctatg gcccgggagt tggtgacacc tgtcgtggga agccagtgga tacgcctggg
      181 atggtggaga ccagagatct ggcacagcta cggcagctca acctggagct cctgaggcag
      241 ctgtgggtcg gacaggatgc cgtgcggcgg tccgtggcca aggcagcctc agagtcaagc
      301 ctgggctcca gcagcagcta caactcagag atgccgtcat cccaagagac gtcctcagtg
      361 gcctcgagag cctccccaca ggatgcccac caaggtgacc cctgtgatag ggacggggcc
      421 agctccgggg tggtctctct tccacctgcc aagtgcctcc accaggagtc cccgggccca
      481 ctgaggcccc gctcggctcc cttgctggcc acctcagact cgagcgaccc agagctttca
      541 gcagagctgg agagtctaga cacccaggag gcacaggccc tgaagtccct cctggctcaa
      601 cggagcaagc tgtccgagcc gagagtgacc aacaaggagt ctccagtgcc tgagaagagc
      661 tggcgcctca gaccgtgcct gggctacgac tggattgcag gtgtggctgg cccccgtgcc
      721 cagggacacg ggtggaggcc ccagcttgct tctgcacctg cctgcgcccc cagcgggcgc
      781 tgctgctctt tctccgactg tttcaccccc ctcgggtctc cggacaatag ctctcccgtc
      841 accagcaagc ccgaggcctt cttctcgaag ctgcagaagt tccgggaagc caacaaggag
      901 gagtgtattt gcagtgaccc tgaatcccag ttcctaggcc tgcaggagag tagtgctgcg
      961 gagggggacc acgaatgtgt gtattgttac tgtgtcaacc ggcgcctgtt tctggtgcct
     1021 tcggatcccc gcaccccctg ccgcctgtgc cggacaccac ggggccagcg gggtccagag
     1081 accctggcag agccagcgca ggtcagggtg agcatcccgc tgtctgtcct ggaccccccg
     1141 caccggtacc gcatccaccg gcggaagagc ttcgacgcct ccgacacgct ggcgctgccc
     1201 cggcactgcc tgctgggctg ggacattctt cctccgaagt ctgagaaaag ctcagccccc
     1261 aagagcctgg acctctggtc cagtgtctct tctgaggccc aacgtcggaa gctgtcagcc
     1321 accagccctt ctcaccgggc cgtgccaacg cgggtcccag cccccaccct aatctggtca
     1381 gaaccctcca tgccccagcc ccgtgccgcc cggccgaagc cctgaggact ggccactggg
     1441 aggtggacag tgcccctacc gtcgtttcag cctctctcct ccggcagggg cgcccacgag
     1501 aggggagctt tgcccagcct cagctggagg tggactctgg ccctaccttc ctaggctggg
     1561 ccggtgggtg gcctcaggcc tgtctccttc ctggggacag atgagaccct ggggttggga
     1621 agaggggctt ctgtgacacg tttgtaaata aagctcagca ctccctgcag ctccaga
//
LOCUS       XM_032653971            1643 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus migration and invasion inhibitory protein
            (MIIP), transcript variant X3, mRNA.
ACCESSION   XM_032653971
VERSION     XM_032653971.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1643
                     /gene="MIIP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116764939"
     CDS             181..1338
                     /gene="MIIP"
                     /codon_start=1
                     /product="migration and invasion-inhibitory protein
                     isoform X3"
                     /protein_id="XP_032509862.1"
                     /db_xref="GeneID:116764939"
                     /translation="MVETRDLAQLRQLNLELLRQLWVGQDAVRRSVAKAASESSLGSS
                     SSYNSEMPSSQETSSVASRASPQDAHQGDPCDRDGASSGVVSLPPAKCLHQESPGPLR
                     PRSAPLLATSDSSDPELSAELESLDTQEAQALKSLLAQRSKLSEPRVTNKESPVPEKS
                     WRLRPCLGYDWIAGSPDNSSPVTSKPEAFFSKLQKFREANKEECICSDPESQFLGLQE
                     SSAAEGDHECVYCYCVNRRLFLVPSDPRTPCRLCRTPRGQRGPETLAEPAQVRVSIPL
                     SVLDPPHRYRIHRRKSFDASDTLALPRHCLLGWDILPPKSEKSSAPKSLDLWSSVSSE
                     AQRRKLSATSPSHRVRSRVPWERQMPWSSLGTAESWRAGLGPCQRGSQPPP"
     misc_feature    328..1242
                     /gene="MIIP"
                     /note="Migration and invasion-inhibitory; Region: MIIP;
                     pfam15734"
                     /db_xref="CDD:464831"
ORIGIN      
        1 aaggccccgc cccctgccgc cgaaccgtag ggtggcctgt gcggaactac cggcggcgca
       61 ggcggcggtg ggctgcgcgg ctctggggct tcctggaggt aggagaactt ggccgtgagg
      121 gcactctatg gcccgggagt tggtgacacc tgtcgtggga agccagtgga tacgcctggg
      181 atggtggaga ccagagatct ggcacagcta cggcagctca acctggagct cctgaggcag
      241 ctgtgggtcg gacaggatgc cgtgcggcgg tccgtggcca aggcagcctc agagtcaagc
      301 ctgggctcca gcagcagcta caactcagag atgccgtcat cccaagagac gtcctcagtg
      361 gcctcgagag cctccccaca ggatgcccac caaggtgacc cctgtgatag ggacggggcc
      421 agctccgggg tggtctctct tccacctgcc aagtgcctcc accaggagtc cccgggccca
      481 ctgaggcccc gctcggctcc cttgctggcc acctcagact cgagcgaccc agagctttca
      541 gcagagctgg agagtctaga cacccaggag gcacaggccc tgaagtccct cctggctcaa
      601 cggagcaagc tgtccgagcc gagagtgacc aacaaggagt ctccagtgcc tgagaagagc
      661 tggcgcctca gaccgtgcct gggctacgac tggattgcag ggtctccgga caatagctct
      721 cccgtcacca gcaagcccga ggccttcttc tcgaagctgc agaagttccg ggaagccaac
      781 aaggaggagt gtatttgcag tgaccctgaa tcccagttcc taggcctgca ggagagtagt
      841 gctgcggagg gggaccacga atgtgtgtat tgttactgtg tcaaccggcg cctgtttctg
      901 gtgccttcgg atccccgcac cccctgccgc ctgtgccgga caccacgggg ccagcggggt
      961 ccagagaccc tggcagagcc agcgcaggtc agggtgagca tcccgctgtc tgtcctggac
     1021 cccccgcacc ggtaccgcat ccaccggcgg aagagcttcg acgcctccga cacgctggcg
     1081 ctgccccggc actgcctgct gggctgggac attcttcctc cgaagtctga gaaaagctca
     1141 gcccccaaga gcctggacct ctggtccagt gtctcttctg aggcccaacg tcggaagctg
     1201 tcagccacca gcccttctca ccgggtacga tccagggtgc cctgggagag acagatgcct
     1261 tggagcagcc tggggaccgc agagtcctgg agggcaggat tggggccgtg ccaacgcggg
     1321 tcccagcccc caccctaatc tggtcagaac cctccatgcc ccagccccgt gccgcccggc
     1381 cgaagccctg aggactggcc actgggaggt ggacagtgcc cctaccgtcg tttcagcctc
     1441 tctcctccgg caggggcgcc cacgagaggg gagctttgcc cagcctcagc tggaggtgga
     1501 ctctggccct accttcctag gctgggccgg tgggtggcct caggcctgtc tccttcctgg
     1561 ggacagatga gaccctgggg ttgggaagag gggcttctgt gacacgtttg taaataaagc
     1621 tcagcactcc ctgcagctcc aga
//
LOCUS       XM_032653980            1563 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus migration and invasion inhibitory protein
            (MIIP), transcript variant X4, mRNA.
ACCESSION   XM_032653980
VERSION     XM_032653980.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1563
                     /gene="MIIP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764939"
     CDS             181..1311
                     /gene="MIIP"
                     /codon_start=1
                     /product="migration and invasion-inhibitory protein
                     isoform X4"
                     /protein_id="XP_032509871.1"
                     /db_xref="GeneID:116764939"
                     /translation="MVETRDLAQLRQLNLELLRQLWVGQDAVRRSVAKAASESSLGSS
                     SSYNSEMPSSQETSSVASRASPQDAHQGDPCDRDGASSGVVSLPPAKCLHQESPGPLR
                     PRSAPLLATSDSSDPELSAELESLDTQEAQALKSLLAQRSKLSEPRVTNKESPVPEKS
                     WRLRPCLGYDWIAGSPDNSSPVTSKPEAFFSKLQKFREANKEECICSDPESQFLGLQE
                     SSAAEGDHECVYCYCVNRRLFLVPSDPRTPCRLCRTPRGQRGPETLAEPAQVRVSIPL
                     SVLDPPHRYRIHRRKSFDASDTLALPRHCLLGWDILPPKSEKSSAPKSLDLWSSVSSE
                     AQRRKLSATSPSHRAVPTRVPAPTLIWSEPSMPQPRAARPKP"
     misc_feature    328..1275
                     /gene="MIIP"
                     /note="Migration and invasion-inhibitory; Region: MIIP;
                     pfam15734"
                     /db_xref="CDD:464831"
ORIGIN      
        1 aaggccccgc cccctgccgc cgaaccgtag ggtggcctgt gcggaactac cggcggcgca
       61 ggcggcggtg ggctgcgcgg ctctggggct tcctggaggt aggagaactt ggccgtgagg
      121 gcactctatg gcccgggagt tggtgacacc tgtcgtggga agccagtgga tacgcctggg
      181 atggtggaga ccagagatct ggcacagcta cggcagctca acctggagct cctgaggcag
      241 ctgtgggtcg gacaggatgc cgtgcggcgg tccgtggcca aggcagcctc agagtcaagc
      301 ctgggctcca gcagcagcta caactcagag atgccgtcat cccaagagac gtcctcagtg
      361 gcctcgagag cctccccaca ggatgcccac caaggtgacc cctgtgatag ggacggggcc
      421 agctccgggg tggtctctct tccacctgcc aagtgcctcc accaggagtc cccgggccca
      481 ctgaggcccc gctcggctcc cttgctggcc acctcagact cgagcgaccc agagctttca
      541 gcagagctgg agagtctaga cacccaggag gcacaggccc tgaagtccct cctggctcaa
      601 cggagcaagc tgtccgagcc gagagtgacc aacaaggagt ctccagtgcc tgagaagagc
      661 tggcgcctca gaccgtgcct gggctacgac tggattgcag ggtctccgga caatagctct
      721 cccgtcacca gcaagcccga ggccttcttc tcgaagctgc agaagttccg ggaagccaac
      781 aaggaggagt gtatttgcag tgaccctgaa tcccagttcc taggcctgca ggagagtagt
      841 gctgcggagg gggaccacga atgtgtgtat tgttactgtg tcaaccggcg cctgtttctg
      901 gtgccttcgg atccccgcac cccctgccgc ctgtgccgga caccacgggg ccagcggggt
      961 ccagagaccc tggcagagcc agcgcaggtc agggtgagca tcccgctgtc tgtcctggac
     1021 cccccgcacc ggtaccgcat ccaccggcgg aagagcttcg acgcctccga cacgctggcg
     1081 ctgccccggc actgcctgct gggctgggac attcttcctc cgaagtctga gaaaagctca
     1141 gcccccaaga gcctggacct ctggtccagt gtctcttctg aggcccaacg tcggaagctg
     1201 tcagccacca gcccttctca ccgggccgtg ccaacgcggg tcccagcccc caccctaatc
     1261 tggtcagaac cctccatgcc ccagccccgt gccgcccggc cgaagccctg aggactggcc
     1321 actgggaggt ggacagtgcc cctaccgtcg tttcagcctc tctcctccgg caggggcgcc
     1381 cacgagaggg gagctttgcc cagcctcagc tggaggtgga ctctggccct accttcctag
     1441 gctgggccgg tgggtggcct caggcctgtc tccttcctgg ggacagatga gaccctgggg
     1501 ttgggaagag gggcttctgt gacacgtttg taaataaagc tcagcactcc ctgcagctcc
     1561 aga
//
LOCUS       XM_032653988            1448 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus migration and invasion inhibitory protein
            (MIIP), transcript variant X5, mRNA.
ACCESSION   XM_032653988
VERSION     XM_032653988.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1448
                     /gene="MIIP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764939"
     CDS             184..1143
                     /gene="MIIP"
                     /codon_start=1
                     /product="migration and invasion-inhibitory protein
                     isoform X5"
                     /protein_id="XP_032509879.1"
                     /db_xref="GeneID:116764939"
                     /translation="MQMGRRAFRRQTCSKSHVEQGGGQTLVLQPPSPRLSPGAHVRPR
                     VTNKESPVPEKSWRLRPCLGYDWIAGVAGPRAQGHGWRPQLASAPACAPSGRCCSFSD
                     CFTPLGSPDNSSPVTSKPEAFFSKLQKFREANKEECICSDPESQFLGLQESSAAEGDH
                     ECVYCYCVNRRLFLVPSDPRTPCRLCRTPRGQRGPETLAEPAQVRVSIPLSVLDPPHR
                     YRIHRRKSFDASDTLALPRHCLLGWDILPPKSEKSSAPKSLDLWSSVSSEAQRRKLSA
                     TSPSHRVRSRVPWERQMPWSSLGTAESWRAGLGPCQRGSQPPP"
     misc_feature    <307..1047
                     /gene="MIIP"
                     /note="Migration and invasion-inhibitory; Region: MIIP;
                     pfam15734"
                     /db_xref="CDD:464831"
ORIGIN      
        1 ctgatgggca cttccttgag cctcagtttc ccccctgaca catgcactca tgggcagcct
       61 cccttccagg gtgaggctcc tgggaggtac cgtgagtcaa gtccagctca gcctaagtgc
      121 ttgataactt gtggccatta gtttctcaga cagcactttg ggaagaaggt gaccagcccc
      181 attatgcaga tgggaagacg ggcgttcaga agacagactt gttcaaagtc acacgtggag
      241 cagggtgggg gccaaactct tgtcctccag cccccaagcc ctcggctgag ccctggggcc
      301 catgtcaggc cgagagtgac caacaaggag tctccagtgc ctgagaagag ctggcgcctc
      361 agaccgtgcc tgggctacga ctggattgca ggtgtggctg gcccccgtgc ccagggacac
      421 gggtggaggc cccagcttgc ttctgcacct gcctgcgccc ccagcgggcg ctgctgctct
      481 ttctccgact gtttcacccc cctcgggtct ccggacaata gctctcccgt caccagcaag
      541 cccgaggcct tcttctcgaa gctgcagaag ttccgggaag ccaacaagga ggagtgtatt
      601 tgcagtgacc ctgaatccca gttcctaggc ctgcaggaga gtagtgctgc ggagggggac
      661 cacgaatgtg tgtattgtta ctgtgtcaac cggcgcctgt ttctggtgcc ttcggatccc
      721 cgcaccccct gccgcctgtg ccggacacca cggggccagc ggggtccaga gaccctggca
      781 gagccagcgc aggtcagggt gagcatcccg ctgtctgtcc tggacccccc gcaccggtac
      841 cgcatccacc ggcggaagag cttcgacgcc tccgacacgc tggcgctgcc ccggcactgc
      901 ctgctgggct gggacattct tcctccgaag tctgagaaaa gctcagcccc caagagcctg
      961 gacctctggt ccagtgtctc ttctgaggcc caacgtcgga agctgtcagc caccagccct
     1021 tctcaccggg tacgatccag ggtgccctgg gagagacaga tgccttggag cagcctgggg
     1081 accgcagagt cctggagggc aggattgggg ccgtgccaac gcgggtccca gcccccaccc
     1141 taatctggtc agaaccctcc atgccccagc cccgtgccgc ccggccgaag ccctgaggac
     1201 tggccactgg gaggtggaca gtgcccctac cgtcgtttca gcctctctcc tccggcaggg
     1261 gcgcccacga gaggggagct ttgcccagcc tcagctggag gtggactctg gccctacctt
     1321 cctaggctgg gccggtgggt ggcctcaggc ctgtctcctt cctggggaca gatgagaccc
     1381 tggggttggg aagaggggct tctgtgacac gtttgtaaat aaagctcagc actccctgca
     1441 gctccaga
//
LOCUS       XM_032653999             861 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus bisphosphoglycerate mutase-like
            (LOC116764955), mRNA.
ACCESSION   XM_032653999
VERSION     XM_032653999.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..861
                     /gene="LOC116764955"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 61% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764955"
     CDS             82..861
                     /gene="LOC116764955"
                     /codon_start=1
                     /product="bisphosphoglycerate mutase-like"
                     /protein_id="XP_032509890.1"
                     /db_xref="GeneID:116764955"
                     /translation="MSKYKLIMLRHGEGAWDKENRFCSWVDQKLNSERMEEAQNCGQQ
                     LKALNFEFGPVFTSILNRSILTAWLILEELGQERVSVESSWHFDECHYGALIGLNREQ
                     IVLNHGKEQVRLWRKSYNVTPPPIEESHPYYHEIYNDWRYKVCAIPLDQLPRSESLKD
                     VLERLLPYWNERIAPEVLSGKTILMSAHGNSSQALLKHLEGISDEDIINITCPTGVPI
                     LLELDENLHAVGPHQFLGNQEAIQAAIKKVEDQGKVECNDK"
     misc_feature    91..792
                     /gene="LOC116764955"
                     /note="Phosphoglycerate mutase (BPG-dependent)
                     [Carbohydrate transport and metabolism]; Region: GpmA;
                     COG0588"
                     /db_xref="CDD:440353"
ORIGIN      
        1 cgctggtggc ctttttgcag atgtattgct gtccctgaac actggcccat tggaaagcac
       61 tagagaagtt cagccatcag tatgtccaag tacaaactga ttatgttaag acatggagag
      121 ggtgcttggg ataaagagaa ccgtttttgt agctgggtgg atcaaaaact taacagtgaa
      181 agaatggaag aagctcagaa ctgtgggcag caactcaaag cgctaaactt tgagtttggt
      241 cctgtgttca catccatcct gaaccggtcc atcctcacag cctggctgat cctggaagag
      301 ctggggcagg agcgggtttc tgtggaaagc tcctggcatt tcgatgagtg tcactatgga
      361 gccttgatcg gtctcaacag ggagcaaatt gttttgaatc atggcaagga acaagtgagg
      421 ctgtggagaa agagctacaa tgtgacccca ccacccatag aggagtccca tccttactac
      481 catgaaatct acaacgactg gaggtacaaa gtgtgcgcca ttcctttgga tcagctgcca
      541 cgatccgaga gcttaaagga tgttctggag agactccttc cttattggaa cgaaaggatt
      601 gctcctgaag tattaagtgg taaaaccatt ctgatgtctg ctcatggaaa tagcagccag
      661 gcactcctga aacatctgga aggtatctca gatgaagaca ttatcaacat tacttgtcct
      721 actggagtcc ccattctcct ggaactggat gagaacctgc atgctgttgg acctcaccag
      781 ttcctgggca accaagaggc tatccaagca gccattaaga aagtagagga tcaaggaaaa
      841 gtggaatgca atgacaaata a
//
LOCUS       XM_032654012            1374 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cellular repressor of E1A stimulated
            genes 1 (CREG1), transcript variant X1, mRNA.
ACCESSION   XM_032654012
VERSION     XM_032654012.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1374
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1374
                     /gene="CREG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116764961"
     CDS             88..747
                     /gene="CREG1"
                     /codon_start=1
                     /product="protein CREG1 isoform X1"
                     /protein_id="XP_032509903.1"
                     /db_xref="GeneID:116764961"
                     /translation="MAGCARGSARAVLAFLLAPALVALLVAPARGRGGRGHGDWGAAE
                     LLPPRENAALVARFVTNVCDWGALATISTQEGVRGRPFADVLSLSDGPPAKGSGVPYF
                     YLSPMQQSVGNLKENPYATLTMSLAETSFCRKYGFDPQSPLCAHIILSGTVIKVSEAE
                     MDVARNSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNATFQY
                     S"
     misc_feature    226..726
                     /gene="CREG1"
                     /note="Pyridoxamine 5'-phosphate oxidase; Region:
                     Pyrid_oxidase_2; pfam13883"
                     /db_xref="CDD:404723"
ORIGIN      
        1 cggtagtgct ggtcgaggcc cgtaacgctg ggctagcctt gggcctccta ggtcataggg
       61 ttccggactc tcgaaggggt caccgccatg gccgggtgtg cccgcgggtc cgctcgtgca
      121 gttctcgcct tcctgctggc gcctgcactg gtggccctac tggtggcgcc ggcgcggggc
      181 cggggtggcc ggggccacgg ggactggggc gccgccgagc tgctgccgcc ccgcgagaac
      241 gcggcgctgg tggctcgctt cgtgacgaac gtctgcgact ggggcgcgct ggccaccatc
      301 tccactcagg agggggtgcg aggccgcccc ttcgccgacg tcttatcgct cagcgacggg
      361 cccccggcca agggcagcgg cgtgccctac ttctacctga gcccgatgca gcagtcggtg
      421 ggcaacctga aggagaatcc atatgctaca ctgaccatgt ctttggcaga gactagtttc
      481 tgcaggaaat atggatttga tccccagagt cccctctgtg ctcacataat actatcagga
      541 actgttatca aggtgagtga agcagaaatg gatgttgcaa ggaattcatt attcattcga
      601 caccctgaga tgaaaacctg gccatccagc cataattggt tcttcgctaa gttgaatata
      661 accaatatct gggtcctgga ctactttggt ggaccaaaaa tagtgacgcc tgaagaatat
      721 tataatgcca catttcaata ttcttgaatg agatgatcac agcagccaca gctgctgatg
      781 aatgtttcag cccagcagcg tttgctaagt gtgtcagcat catacttgga gaggaggaat
      841 gatggccgag atgaagattc ctagctaggc ctgaccctaa accagaactc aggaatctgc
      901 attttagcaa actcagatga ttcttttttt aaattttttt aatttgcaaa tcatatattt
      961 gataaggggt taatatccaa aatatataaa gaattcatac aactcaatag caaataaaac
     1021 aaacaatcca attacaaatg ggcagaggat ccgatcagac gtttctccaa gaagacatac
     1081 gtggccaggt acacgaaaag atgctcagcg tcaccgatca tcaggaagat gcaagtcaga
     1141 accttaatga gatatcacct cacatgtgtt agaatggctg ttatcaaaaa gacaagaaat
     1201 aacaagtatt ggtgaggatg tggagaacgg ggaaccccta tgcactgtta atgggaatgc
     1261 aaattggcgc agccaccatg gaaaacagca tggagattcc tcgaaaactt aaaaacagaa
     1321 ctaacatgtt tccagcaatt ccatttctgg atatttatct gaagaaaatg aaaa
//
LOCUS       XM_032654016            2104 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cellular repressor of E1A stimulated
            genes 1 (CREG1), transcript variant X2, mRNA.
ACCESSION   XM_032654016
VERSION     XM_032654016.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2104
                     /gene="CREG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764961"
     CDS             104..757
                     /gene="CREG1"
                     /codon_start=1
                     /product="protein CREG1 isoform X2"
                     /protein_id="XP_032509907.1"
                     /db_xref="GeneID:116764961"
                     /translation="MAGCARGSARAVLAFLLAPALVALLVAPARGRGGRGHGDWGAAE
                     LLPPRENAALVARFVTNVCDWGALATISTQEGVRGRPFADVLSLSDGPPAKGSGVPYF
                     YLSPMQQSVGNLKENPYATLTMSLAETSFCRKYGFDPQSPLCAHIILSGTVIKVSEAE
                     MDVARNSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNATFQ"
     misc_feature    242..742
                     /gene="CREG1"
                     /note="Pyridoxamine 5'-phosphate oxidase; Region:
                     Pyrid_oxidase_2; pfam13883"
                     /db_xref="CDD:404723"
ORIGIN      
        1 ccgcggtggg cggggccggt agtgctggtc gaggcccgta acgctgggct agccttgggc
       61 ctcctaggtc atagggttcc ggactctcga aggggtcacc gccatggccg ggtgtgcccg
      121 cgggtccgct cgtgcagttc tcgccttcct gctggcgcct gcactggtgg ccctactggt
      181 ggcgccggcg cggggccggg gtggccgggg ccacggggac tggggcgccg ccgagctgct
      241 gccgccccgc gagaacgcgg cgctggtggc tcgcttcgtg acgaacgtct gcgactgggg
      301 cgcgctggcc accatctcca ctcaggaggg ggtgcgaggc cgccccttcg ccgacgtctt
      361 atcgctcagc gacgggcccc cggccaaggg cagcggcgtg ccctacttct acctgagccc
      421 gatgcagcag tcggtgggca acctgaagga gaatccatat gctacactga ccatgtcttt
      481 ggcagagact agtttctgca ggaaatatgg atttgatccc cagagtcccc tctgtgctca
      541 cataatacta tcaggaactg ttatcaaggt gagtgaagca gaaatggatg ttgcaaggaa
      601 ttcattattc attcgacacc ctgagatgaa aacctggcca tccagccata attggttctt
      661 cgctaagttg aatataacca atatctgggt cctggactac tttggtggac caaaaatagt
      721 gacgcctgaa gaatattata atgccacatt tcagtgaagc agcatatggc gaatttaacc
      781 tcatgtgcga agtttcttag gaagtttcat gcagacttaa agcacttaat gtttctttat
      841 ggaaagttcc agaatattag acagttttct ttccttgctt gcatgtttac agaattgaga
      901 tggattgtta ctgcatttct tggaagatga gattgctgga tatatttaca tatttttttg
      961 tattttgaag ccattttcat agagacatgt cattcgttat gatcaaagaa gttttgttcc
     1021 atcaattcca aatagtttgc caatggtgct ccttaaagag gagtgggtac cagttttaga
     1081 ttgcccattg gcatttgaaa gtacccaagt acgtgttttt aattactgaa aaccactgtg
     1141 ctggggagag gtgtcatgcc tccacggctg ctgccttagc ctgtattaag ggcttggctc
     1201 ctgttacaag tgcacctgaa taaatcttgc caagacaaac aaacagtgat gaaacacaaa
     1261 tggagcatcc cactcatggt ccatttatgt ctgacagtcc tgggtgttgt tgattcaaca
     1321 cagggcaaga ctatttctta taaagaagtt taaaaaaagc ttttgaggtc taaagtgata
     1381 attatctaga acaaaggaag ttcataaaac ttcctgaatt tgatttaatc aaggaagttc
     1441 ataaaatttt ctgaatttga tttccccagc taggtggaca ctgtataatt agtttcctcc
     1501 actcaaaata cagagataca agcacacttt tttttttttt ttgccccaaa atgggattgc
     1561 gaagaaagaa aagaaaggag gggattttgt gtgtaaattg tttctggtgt tcttttctaa
     1621 gttaagttaa cgcagatata gaccagttta aaccagggcc caaatccatc tcccaaccac
     1681 tctctctagc tttttttcta atgctactct caaaaatgaa ctaagccttc ctcaactgct
     1741 tcaaatctct aaatggcttc taatgctgtt actacctaaa tcatgtcatc agagggaaaa
     1801 caacgtgact tttagaaaag aaatcacatt tcttcagaag ggaaaaaact gtttgctttt
     1861 attacctata tacatgattt cagaagactg tatgagatcc ttcataaaga gctgtgtcag
     1921 gagtcaagca actgaatctt taatggctaa gagaggaagt tgaatatgag tttgaagact
     1981 acaaaatgaa cttatctgaa atcgagcaaa cagcttctct ttaagaaaaa tgatgtatct
     2041 taaacttggt agagtaggtt tcttattcaa ggcattaata attaaaagca ttattttcat
     2101 gaaa
//
LOCUS       XM_032654026            4603 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cellular repressor of E1A stimulated
            genes 1 (CREG1), transcript variant X3, mRNA.
ACCESSION   XM_032654026
VERSION     XM_032654026.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4603
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4603
                     /gene="CREG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116764961"
     CDS             88..741
                     /gene="CREG1"
                     /codon_start=1
                     /product="protein CREG1 isoform X3"
                     /protein_id="XP_032509917.1"
                     /db_xref="GeneID:116764961"
                     /translation="MAGCARGSARAVLAFLLAPALVALLVAPARGRGGRGHGDWGAAE
                     LLPPRENAALVARFVTNVCDWGALATISTQEGVRGRPFADVLSLSDGPPAKGSGVPYF
                     YLSPMQQSVGNLKENPYATLTMSLAETSFCRKYGFDPQSPLCAHIILSGTVIKVSEAE
                     MDVARNSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNATFQ"
     misc_feature    226..726
                     /gene="CREG1"
                     /note="Pyridoxamine 5'-phosphate oxidase; Region:
                     Pyrid_oxidase_2; pfam13883"
                     /db_xref="CDD:404723"
ORIGIN      
        1 cggtagtgct ggtcgaggcc cgtaacgctg ggctagcctt gggcctccta ggtcataggg
       61 ttccggactc tcgaaggggt caccgccatg gccgggtgtg cccgcgggtc cgctcgtgca
      121 gttctcgcct tcctgctggc gcctgcactg gtggccctac tggtggcgcc ggcgcggggc
      181 cggggtggcc ggggccacgg ggactggggc gccgccgagc tgctgccgcc ccgcgagaac
      241 gcggcgctgg tggctcgctt cgtgacgaac gtctgcgact ggggcgcgct ggccaccatc
      301 tccactcagg agggggtgcg aggccgcccc ttcgccgacg tcttatcgct cagcgacggg
      361 cccccggcca agggcagcgg cgtgccctac ttctacctga gcccgatgca gcagtcggtg
      421 ggcaacctga aggagaatcc atatgctaca ctgaccatgt ctttggcaga gactagtttc
      481 tgcaggaaat atggatttga tccccagagt cccctctgtg ctcacataat actatcagga
      541 actgttatca aggtgagtga agcagaaatg gatgttgcaa ggaattcatt attcattcga
      601 caccctgaga tgaaaacctg gccatccagc cataattggt tcttcgctaa gttgaatata
      661 accaatatct gggtcctgga ctactttggt ggaccaaaaa tagtgacgcc tgaagaatat
      721 tataatgcca catttcagta agtatttaca tgtctttcat ctttctaata ttacagccct
      781 tttagaaggt cctcaacctt ctaaagcaag ggggtcttaa ccatttcatg taccatggat
      841 ccctttggca agctggtaag gcctacaact cccctaggaa taatattttt taaatgcatg
      901 aagtacacag gattacaaaa gaaatcaact atattgaaat acctttataa aaatatttta
      961 taaaatgcgt ggtgtagtaa tatgttggct ttttaatgaa tacgttaaat aataaggtct
     1021 agcgcgtcca taactttcct gcactttcag agtagtgaga actgaatata ttaagacatc
     1081 tgcagcaact ctaccatgat gtgagagtat ctgcaatttc tatatttctg ttgctggccg
     1141 tcacagatac actgtcacca ctgtggttta ttgcctacat tcatcattga aaagaatgat
     1201 acatttcagt tagagcttaa tgaaaatgaa aactttttcc atcccagttt tttcccatca
     1261 caaaccccct gaactctgtc tacaaactag gacactaggt ggagattcta ttattttttc
     1321 ttctttttgt ctgcacccta tggcttgaag gatcttaata ccctgaccag ggattgaacc
     1381 tgggccgtgg cattgaacgc gtggagccct aaccactgga ctgccaggga attcctgaga
     1441 ccccatttta aggctatgct tctggggccc tgggtggaga ccagttctga cctgtgatgg
     1501 cattttctca taagaatcag acctgggtgc ttccagacca tgaaggatcc acatcgagtc
     1561 cgagcacgtg acccctgtcc cctcaacccc gagtcctgtg agcacctgtg gaggtgtgtg
     1621 gtgtatccct ccaggaagtg gatacttaga gggaaggagt catgggagag aatgaacgag
     1681 aagaacatta cctgaagatg ggaaagggac aggaaagaag ggtctgatca gattctttga
     1741 aattaggtca gggttcaaat gaaggaatac agggacttcc ctggtggtcc agaggttaga
     1801 acttcgcact tagttcccca tttggggaac taagatcctg caagctgcaa ggcatgacga
     1861 aaaacaaaca agcaaacaaa acaaaacaac cccccgccgc aaaacaaatg aagccataca
     1921 agggactgat acttttccca ggcgacacag gtcactgtgg catgtctggc agcctcaagg
     1981 tctagcagat ggtgatgaca ataacagtag cagtagcgtt tgttgagcat tgctggctgg
     2041 tgctgtactg gcagctttac atgtctgaac tcactgaact ctcactgcaa tcctatgagt
     2101 taggtagtgt ttttcttcat ttatgagata gagagctgat gcacagaaaa gaaagaaact
     2161 gacctaaagc cttacagcca gtaagcaatg gtgctgggat gcaaacccca gcattctagc
     2221 tccacagccc tcaacttgct tctaaccaag atgttttgct gcccctctgg ttaccttact
     2281 ggcagctggc caggcttcaa ttccagtgta atttaaacac tttctactta caacagactg
     2341 agtgctgttt gtggagatta gggtgacatg ctaagctaga cctgtaggtt gcagttcagg
     2401 tttgggttta aattcgcagt attcgtttat tctgtcttat tctattgtac aacagttctg
     2461 tggtgaccta ttgactttcc accatgactg taagtctctt cacagcaaag ctcaggtttt
     2521 agttttggtt tttctggacc taggacagta catggcacag agcgggtgtt taataaatac
     2581 tggctacttg tcaggctgat cctttgagac aaagattctc gacttccttg tttgaataaa
     2641 gaatctaaca gtcatggtgt ttattctgct gccgtgcatg caggagaaga gacctgggcc
     2701 agtgattgtc tcctggacac gaaaagccat cttactttat aggaagacag aggtagcaat
     2761 tacaacatta tggcagggca acaaattatc aaggaggaag gccagtaaga ggcctgctct
     2821 ttgaggttaa agttcacttt tacaggatat aacaatctct gaagtacagt tatctttgta
     2881 taaataatat gcccgagggc aatgcttgct ttaataacaa aataaaactg ggttttccca
     2941 taagtctcca cgctgaataa gtgagtaaaa tagataaatt tgaggttccc acttaattaa
     3001 cacagacgag tgggcctttt ctgcagctca gagttaaaag agagcactct ctcctgtcct
     3061 tctgagagga ggacagaaga ctagcccagg gtgtgatcca tcctgagaca ggactccaga
     3121 atcctaggaa tgggcagtga cttgaaggtg accttcccga acagctgcct ctgactccat
     3181 ttcagagtcc aggagtgggt gccccaccat cccacccacc aggtttgcca tcagaactgt
     3241 tcaatagccc aagagagtat acagtagtcc ttgccttgct ggactcatat tgaatggaag
     3301 gttgatgttc acccaaagta tttgcgctca tgcttgagta agcagttctc ataagtacca
     3361 gcaattgctt cctctctctg ttaagtatga gcagcaggtc tctgggctgc ccacgtgttc
     3421 cctggcaaag acagaggtaa taagaggtca cagcctacaa gcctgcccgc tctgccttac
     3481 ctggagctgg atttcctgat ggcagtggtc ggggccgcaa caggaaaatg ggtcaaggtc
     3541 atgtcctcgg ttggatgctg gctgattgcc gctcttttgc cctaatgttc agaacccctt
     3601 ctgttctcga ctgtttttgt cttttaaacc ttcagatatt cttgaatgag atgatcacag
     3661 cagccacagc tgctgatgaa tgtttcagcc cagcagcgtt tgctaagtgt gtcagcatca
     3721 tacttggaga ggaggaatga tggccgagat gaagattcct agctaggcct gaccctaaac
     3781 cagaactcag gaatctgcat tttagcaaac tcagatgatt ctttttttaa atttttttaa
     3841 tttgcaaatc atatatttga taaggggtta atatccaaaa tatataaaga attcatacaa
     3901 ctcaatagca aataaaacaa acaatccaat tacaaatggg cagaggatcc gatcagacgt
     3961 ttctccaaga agacatacgt ggccaggtac acgaaaagat gctcagcgtc accgatcatc
     4021 aggaagatgc aagtcagaac cttaatgaga tatcacctca catgtgttag aatggctgtt
     4081 atcaaaaaga caagaaataa caagtattgg tgaggatgtg gagaacgggg aacccctatg
     4141 cactgttaat gggaatgcaa attggcgcag ccaccatgga aaacagcatg gagattcctc
     4201 gaaaacttaa aaacagaact aacatgtttc cagcaattcc atttctggat atttatctga
     4261 agaaaatgaa aaccctaatt tgaaaagctg tatgcacccc atgttcattg cagcatcatt
     4321 cgcaatagcc aagacaggga agcaacctgt gtccattgat ggatggatag aaaaagaaaa
     4381 tgtgattgct gtatctctct atgtagatat aggaatatta ttcagccata taaaagaagg
     4441 aaatcttgtc atttgtaaca aaatggatgt actttgagtg cattatgcta agtgaaaaag
     4501 tcagacagag aaaaatactg tattatatgt ggaatctaaa caacaaataa gcaaaccaac
     4561 aaaaaaccaa agcaaagcaa actcataggt acagagaaca gat
//
LOCUS       XM_032654031            1968 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cellular repressor of E1A stimulated
            genes 1 (CREG1), transcript variant X4, mRNA.
ACCESSION   XM_032654031
VERSION     XM_032654031.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1968
                     /gene="CREG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116764961"
     CDS             88..621
                     /gene="CREG1"
                     /codon_start=1
                     /product="protein CREG1 isoform X4"
                     /protein_id="XP_032509922.1"
                     /db_xref="GeneID:116764961"
                     /translation="MAGCARGSARAVLAFLLAPALVALLVAPARGRGGRGHGDWGAAE
                     LLPPRENAALVARFVTNVCDWGALATISTQEGVRGRPFADVLSLSDGPPAKGSGVPYF
                     YLSPMQQSVGNLKVSEAEMDVARNSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYF
                     GGPKIVTPEEYYNATFQ"
     misc_feature    226..606
                     /gene="CREG1"
                     /note="Pyridoxamine 5'-phosphate oxidase; Region:
                     Pyrid_oxidase_2; pfam13883"
                     /db_xref="CDD:404723"
ORIGIN      
        1 cggtagtgct ggtcgaggcc cgtaacgctg ggctagcctt gggcctccta ggtcataggg
       61 ttccggactc tcgaaggggt caccgccatg gccgggtgtg cccgcgggtc cgctcgtgca
      121 gttctcgcct tcctgctggc gcctgcactg gtggccctac tggtggcgcc ggcgcggggc
      181 cggggtggcc ggggccacgg ggactggggc gccgccgagc tgctgccgcc ccgcgagaac
      241 gcggcgctgg tggctcgctt cgtgacgaac gtctgcgact ggggcgcgct ggccaccatc
      301 tccactcagg agggggtgcg aggccgcccc ttcgccgacg tcttatcgct cagcgacggg
      361 cccccggcca agggcagcgg cgtgccctac ttctacctga gcccgatgca gcagtcggtg
      421 ggcaacctga aggtgagtga agcagaaatg gatgttgcaa ggaattcatt attcattcga
      481 caccctgaga tgaaaacctg gccatccagc cataattggt tcttcgctaa gttgaatata
      541 accaatatct gggtcctgga ctactttggt ggaccaaaaa tagtgacgcc tgaagaatat
      601 tataatgcca catttcagtg aagcagcata tggcgaattt aacctcatgt gcgaagtttc
      661 ttaggaagtt tcatgcagac ttaaagcact taatgtttct ttatggaaag ttccagaata
      721 ttagacagtt ttctttcctt gcttgcatgt ttacagaatt gagatggatt gttactgcat
      781 ttcttggaag atgagattgc tggatatatt tacatatttt tttgtatttt gaagccattt
      841 tcatagagac atgtcattcg ttatgatcaa agaagttttg ttccatcaat tccaaatagt
      901 ttgccaatgg tgctccttaa agaggagtgg gtaccagttt tagattgccc attggcattt
      961 gaaagtaccc aagtacgtgt ttttaattac tgaaaaccac tgtgctgggg agaggtgtca
     1021 tgcctccacg gctgctgcct tagcctgtat taagggcttg gctcctgtta caagtgcacc
     1081 tgaataaatc ttgccaagac aaacaaacag tgatgaaaca caaatggagc atcccactca
     1141 tggtccattt atgtctgaca gtcctgggtg ttgttgattc aacacagggc aagactattt
     1201 cttataaaga agtttaaaaa aagcttttga ggtctaaagt gataattatc tagaacaaag
     1261 gaagttcata aaacttcctg aatttgattt aatcaaggaa gttcataaaa ttttctgaat
     1321 ttgatttccc cagctaggtg gacactgtat aattagtttc ctccactcaa aatacagaga
     1381 tacaagcaca cttttttttt ttttttgccc caaaatggga ttgcgaagaa agaaaagaaa
     1441 ggaggggatt ttgtgtgtaa attgtttctg gtgttctttt ctaagttaag ttaacgcaga
     1501 tatagaccag tttaaaccag ggcccaaatc catctcccaa ccactctctc tagctttttt
     1561 tctaatgcta ctctcaaaaa tgaactaagc cttcctcaac tgcttcaaat ctctaaatgg
     1621 cttctaatgc tgttactacc taaatcatgt catcagaggg aaaacaacgt gacttttaga
     1681 aaagaaatca catttcttca gaagggaaaa aactgtttgc ttttattacc tatatacatg
     1741 atttcagaag actgtatgag atccttcata aagagctgtg tcaggagtca agcaactgaa
     1801 tctttaatgg ctaagagagg aagttgaata tgagtttgaa gactacaaaa tgaacttatc
     1861 tgaaatcgag caaacagctt ctctttaaga aaaatgatgt atcttaaact tggtagagta
     1921 ggtttcttat tcaaggcatt aataattaaa agcattattt tcatgaaa
//
LOCUS       XR_004353110             736 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116764979
            (LOC116764979), ncRNA.
ACCESSION   XR_004353110
VERSION     XR_004353110.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..736
                     /gene="LOC116764979"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116764979"
     ncRNA           1..736
                     /ncRNA_class="lncRNA"
                     /gene="LOC116764979"
                     /product="uncharacterized LOC116764979"
                     /db_xref="GeneID:116764979"
ORIGIN      
        1 catttggttg ggaaatgact gaaccaggcc agttttggta gctccgcttc cccctgggtg
       61 gggcagcaac cccaataaaa agggcctctg ctgcacgaca gctatcctcc tgctactcga
      121 gttccgattg actttggaga acctgatata aagattccag aaagatgtct tctcaagagc
      181 agcagtgcaa gcagcagtgc aagatacctc cagtgtgccc aacacagtgc cctgatcctt
      241 gctcacctaa aaagggtaca gacccttgcc cacctataaa gtgcactgag aaatgcactc
      301 ctgtgccacc tccccagcaa tgccagcaga agtgcccacc caaggacaag taacagcttc
      361 aggttttatc tgcctctgga aaggataagc acaatcagct catctagttc cacagctcca
      421 ccttcatctt ctcttcaaag cctatcatgg atacagaaga agctttccac ccttcagcct
      481 gcagtgtgcg ttggggattc ctgacggaca gaggtttcct atctgagtct gctatgctga
      541 ttccctctgg gaggtgtccg aaaaagcatc ccagagcctc agagggaagg gcagtatctc
      601 tcctcttgag tgtcctctga ggattctctc agagtcttct gtgtgtatct gtcacatggg
      661 cagtggtttc tgccagatga gcagttgtta cttatcctcc atttcctgaa taaaatacaa
      721 ttttttttgg ggatgg
//
LOCUS       XM_032654037            3142 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type VIII alpha 2 chain
            (COL8A2), transcript variant X1, mRNA.
ACCESSION   XM_032654037
VERSION     XM_032654037.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3142
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3142
                     /gene="COL8A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 13
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116764988"
     CDS             365..2485
                     /gene="COL8A2"
                     /codon_start=1
                     /product="collagen alpha-2(VIII) chain isoform X1"
                     /protein_id="XP_032509928.1"
                     /db_xref="GeneID:116764988"
                     /translation="MRGALTSLSSLPPPLLLLLLLVLGCGLRAAASGGAAGAAGYPPV
                     QYVQPMHKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGK
                     PGTGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGP
                     PGPPGLPGPSGIAVPGKPGPQGVPGPPGFGGEPGPQGEPGPPGDRGLKGENGVGQPGL
                     PGAPGQGGAPGPPGLPGPAGLGKPGLDGFPGAPGDKGESGPPGLPGPRGEPGALGPKG
                     PPGLDGMGVPGSAGVPGPQGPPGAKGEPGTRGPPGLIGPTGYGIPGLPGPKGDRGPAG
                     VPGLLGDRGEPGEDGEQGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGETGPGGPPGV
                     PGIRGDQGPSGLAGKPGLPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQK
                     GDLGLPGQPGLRGPSGIPGLQGPSGPIGPQGLPGLKGEPGLPGAPGEGKVGEPGMAGP
                     TGPPGVPGSPGLTGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVQGAVLGKGTKPR
                     FGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYY
                     FAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPS
                     DQANGLYSTEYIHSSFSGFLLCPT"
     misc_feature    <737..>1423
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <1181..>1876
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    2075..2482
                     /gene="COL8A2"
                     /note="Complement component C1q domain; Region: C1Q;
                     smart00110"
                     /db_xref="CDD:128420"
ORIGIN      
        1 ggtagtgaca gcagtttggg ttggaggtgt atgagggaca gccaggcgaa aatgctcagc
       61 tcatagtcaa accaggagtt ggggctcagg agagaggtag ctggaaacag aatgtgggag
      121 tccttggtga tgggattgga actgtgggag tctggggaga gctggaaact gcaggagaaa
      181 acatccagag agaagagaag aggcctgagc cagctccttt gggcaagact gggtctgcag
      241 agtgggcaga gggaaggagc agagaagaat ctgaggaaga gcctttccag gaaggaggaa
      301 agcagggtca caaggcggga gtcagtgctg gagagaagga aacacgagca agcctaagga
      361 cgccatgcgg ggggctctga cgtccctgtc ttcgctgccg ccacctctgc tgctgctgct
      421 gctgctggtg ctggggtgcg ggctgagggc ggccgccagc ggtggagccg ccggggcagc
      481 gggctacccg ccggtgcagt acgtgcagcc catgcacaaa ggacccgtgg ggccgccctt
      541 ccgcgagggc aagggccaat acctggaaat gcctctaccg ctgttgccaa tggacctgaa
      601 aggagagcct ggtcccccag gaaaacccgg accgcggggt ccccctggcc ctcctggctt
      661 cccaggaaaa ccaggcactg gaaaaccagg gctacatggg cagcctggac ccgctggccc
      721 ccctggcttc tcccggatgg gcaaggctgg tcccccaggg cttccaggca aggttggccc
      781 accagggcag ccggggcttc ggggggagcc agggatacga ggggaccagg gcctccgggg
      841 gcccccaggg ccccctggcc tacctgggcc ctcaggcatt gctgtccctg gaaaaccagg
      901 tccccagggg gtgccagggc ccccaggatt tgggggggag ccagggcccc agggagagcc
      961 tgggcccccg ggtgatcgag gcctcaaggg tgaaaatgga gtgggccaac cagggcttcc
     1021 tggagcccca ggccaggggg gtgcccccgg accccctggt ctccctggtc cagctggctt
     1081 gggcaaacca ggtttggatg ggtttcctgg ggcccctgga gataagggtg agtctgggcc
     1141 tcctgggctg ccaggaccca ggggggagcc aggagctttg ggccccaaag ggccccctgg
     1201 gctggatggt atgggggtac cagggtcagc aggggtgcca gggccacagg gcccaccagg
     1261 ggccaaaggg gagccaggca cccggggccc tcctggcctg ataggcccca ctggctatgg
     1321 gataccaggg ctgccaggtc ccaaggggga caggggccca gctggggtcc cggggctctt
     1381 gggggacagg ggcgagccag gtgaggatgg ggagcagggg gaacaggggc cacagggcct
     1441 tgggggcccc cctggacttc cggggtctgc agggctacct ggccgacgtg ggcccccggg
     1501 gcctaagggg gagacggggc ctggaggacc cccaggagtg cctggcattc ggggtgacca
     1561 ggggcctagt ggcctggctg ggaaacctgg gctcccagga gagagggggc ttccaggggc
     1621 tcatggacct cctggaccga ctgggcccaa aggcgagcca ggtttcacgg gccgccctgg
     1681 aggaccaggg gtggcaggag ccctggggca gaagggtgac ttggggctcc ctgggcagcc
     1741 tggcctgaga ggcccttctg gaatcccagg actccaaggt ccgtctggcc ctattgggcc
     1801 gcagggtctg ccaggcctga agggtgaacc aggcctgccg ggggcccctg gagaggggaa
     1861 agtgggagaa cctggcatgg ctgggcctac agggcctcct ggggtcccag gttccccagg
     1921 actcacgggc cctcctgggc ctcccggacc tcccgggccc cctggtgcac ccggggcctt
     1981 cgatgagact ggcatcgctg gcctgcacct gcccaacggc ggcgtgcagg gagctgtgct
     2041 gggcaagggg accaagcccc ggtttgggct gggcgagctg tcggcccatg ccacgcccgc
     2101 cttcaccgct gtgctcacct cacccttccc cgcctcaggc atgcctgtga agtttgaccg
     2161 gaccctctac aatggccaca gtggctacaa cccagccacc ggcatcttca cctgccccgt
     2221 gggcggggtc tactactttg cttaccacgt gcacgtcaag ggcaccaatg tgtgggtggc
     2281 cctgtacaag aacaacgtgc cagccaccta cacctatgac gagtacaaga agggctacct
     2341 ggaccaggcg tctggggggg ccgtgctcca gctgcggccc aacgaccagg tctgggtgca
     2401 gatgccctcg gaccaggcca atggcctcta ctccaccgag tacatccact cctccttttc
     2461 aggattcttg ctgtgcccca cataacccat gctgccccgg cctcctcctc tttagcggta
     2521 gagagacctt ctcacttaca aagaacctcc atttaaagaa aaaaccaaag gccaaacaga
     2581 ggcgggagca gaggcggccg cggccttggc ccgaggagac tgactgggtt tctccctcca
     2641 cgcaggctga ggttgtttct ggaagaaggt ggcctgcgtt cctctccccc gagtgtctgt
     2701 gcagcatcgg ggttgtgccc cctctcctgc cctgcctggc ctgcaggcag ggccccagga
     2761 tgctctgccc agctggtggg gacccctggc ccccgtgagt gctgggctct gctgggcggc
     2821 gaaggagtca gagctgagag gggaccgagt tcccccaccc attcccccgg ggagacatct
     2881 tcccagccct gcccttcctg cctgcccgca gacggcccct gctcaaggaa tggggcaggg
     2941 cctccctcag ttcttggctg gggctcttcc ggctgccccg cgggacctcc agcataagac
     3001 ggtgggtccc ctgaagagtt tttgtttctc tccaggggaa gggagaggag ggggaccatc
     3061 gaggtggcca gtggacaccc tgtcaggact gccaccctag cagtggggtg gtggcatcag
     3121 gcctgtccct ggcaggtaca gg
//
LOCUS       XM_032654040            2966 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type VIII alpha 2 chain
            (COL8A2), transcript variant X2, mRNA.
ACCESSION   XM_032654040
VERSION     XM_032654040.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2966
                     /gene="COL8A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 13
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116764988"
     CDS             189..2309
                     /gene="COL8A2"
                     /codon_start=1
                     /product="collagen alpha-2(VIII) chain isoform X1"
                     /protein_id="XP_032509931.1"
                     /db_xref="GeneID:116764988"
                     /translation="MRGALTSLSSLPPPLLLLLLLVLGCGLRAAASGGAAGAAGYPPV
                     QYVQPMHKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGK
                     PGTGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGP
                     PGPPGLPGPSGIAVPGKPGPQGVPGPPGFGGEPGPQGEPGPPGDRGLKGENGVGQPGL
                     PGAPGQGGAPGPPGLPGPAGLGKPGLDGFPGAPGDKGESGPPGLPGPRGEPGALGPKG
                     PPGLDGMGVPGSAGVPGPQGPPGAKGEPGTRGPPGLIGPTGYGIPGLPGPKGDRGPAG
                     VPGLLGDRGEPGEDGEQGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGETGPGGPPGV
                     PGIRGDQGPSGLAGKPGLPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQK
                     GDLGLPGQPGLRGPSGIPGLQGPSGPIGPQGLPGLKGEPGLPGAPGEGKVGEPGMAGP
                     TGPPGVPGSPGLTGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVQGAVLGKGTKPR
                     FGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYY
                     FAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPS
                     DQANGLYSTEYIHSSFSGFLLCPT"
     misc_feature    <561..>1247
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <1005..>1700
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    1899..2306
                     /gene="COL8A2"
                     /note="Complement component C1q domain; Region: C1Q;
                     smart00110"
                     /db_xref="CDD:128420"
ORIGIN      
        1 ggggcggccg gcagagcgac gcggagcctc gccggcgcgg accccgacga cgcccctgcc
       61 cggagcccgc gcgccccggg ccgccctcga gggccgggaa gtggcgccag gcgggccgcc
      121 cctgcaggcc ttgtctctgc tggcaccttc agaggcccct ccgacctgaa agcaagccta
      181 aggacgccat gcggggggct ctgacgtccc tgtcttcgct gccgccacct ctgctgctgc
      241 tgctgctgct ggtgctgggg tgcgggctga gggcggccgc cagcggtgga gccgccgggg
      301 cagcgggcta cccgccggtg cagtacgtgc agcccatgca caaaggaccc gtggggccgc
      361 ccttccgcga gggcaagggc caatacctgg aaatgcctct accgctgttg ccaatggacc
      421 tgaaaggaga gcctggtccc ccaggaaaac ccggaccgcg gggtccccct ggccctcctg
      481 gcttcccagg aaaaccaggc actggaaaac cagggctaca tgggcagcct ggacccgctg
      541 gcccccctgg cttctcccgg atgggcaagg ctggtccccc agggcttcca ggcaaggttg
      601 gcccaccagg gcagccgggg cttcgggggg agccagggat acgaggggac cagggcctcc
      661 gggggccccc agggccccct ggcctacctg ggccctcagg cattgctgtc cctggaaaac
      721 caggtcccca gggggtgcca gggcccccag gatttggggg ggagccaggg ccccagggag
      781 agcctgggcc cccgggtgat cgaggcctca agggtgaaaa tggagtgggc caaccagggc
      841 ttcctggagc cccaggccag gggggtgccc ccggaccccc tggtctccct ggtccagctg
      901 gcttgggcaa accaggtttg gatgggtttc ctggggcccc tggagataag ggtgagtctg
      961 ggcctcctgg gctgccagga cccagggggg agccaggagc tttgggcccc aaagggcccc
     1021 ctgggctgga tggtatgggg gtaccagggt cagcaggggt gccagggcca cagggcccac
     1081 caggggccaa aggggagcca ggcacccggg gccctcctgg cctgataggc cccactggct
     1141 atgggatacc agggctgcca ggtcccaagg gggacagggg cccagctggg gtcccggggc
     1201 tcttggggga caggggcgag ccaggtgagg atggggagca gggggaacag gggccacagg
     1261 gccttggggg cccccctgga cttccggggt ctgcagggct acctggccga cgtgggcccc
     1321 cggggcctaa gggggagacg gggcctggag gacccccagg agtgcctggc attcggggtg
     1381 accaggggcc tagtggcctg gctgggaaac ctgggctccc aggagagagg gggcttccag
     1441 gggctcatgg acctcctgga ccgactgggc ccaaaggcga gccaggtttc acgggccgcc
     1501 ctggaggacc aggggtggca ggagccctgg ggcagaaggg tgacttgggg ctccctgggc
     1561 agcctggcct gagaggccct tctggaatcc caggactcca aggtccgtct ggccctattg
     1621 ggccgcaggg tctgccaggc ctgaagggtg aaccaggcct gccgggggcc cctggagagg
     1681 ggaaagtggg agaacctggc atggctgggc ctacagggcc tcctggggtc ccaggttccc
     1741 caggactcac gggccctcct gggcctcccg gacctcccgg gccccctggt gcacccgggg
     1801 ccttcgatga gactggcatc gctggcctgc acctgcccaa cggcggcgtg cagggagctg
     1861 tgctgggcaa ggggaccaag ccccggtttg ggctgggcga gctgtcggcc catgccacgc
     1921 ccgccttcac cgctgtgctc acctcaccct tccccgcctc aggcatgcct gtgaagtttg
     1981 accggaccct ctacaatggc cacagtggct acaacccagc caccggcatc ttcacctgcc
     2041 ccgtgggcgg ggtctactac tttgcttacc acgtgcacgt caagggcacc aatgtgtggg
     2101 tggccctgta caagaacaac gtgccagcca cctacaccta tgacgagtac aagaagggct
     2161 acctggacca ggcgtctggg ggggccgtgc tccagctgcg gcccaacgac caggtctggg
     2221 tgcagatgcc ctcggaccag gccaatggcc tctactccac cgagtacatc cactcctcct
     2281 tttcaggatt cttgctgtgc cccacataac ccatgctgcc ccggcctcct cctctttagc
     2341 ggtagagaga ccttctcact tacaaagaac ctccatttaa agaaaaaacc aaaggccaaa
     2401 cagaggcggg agcagaggcg gccgcggcct tggcccgagg agactgactg ggtttctccc
     2461 tccacgcagg ctgaggttgt ttctggaaga aggtggcctg cgttcctctc ccccgagtgt
     2521 ctgtgcagca tcggggttgt gccccctctc ctgccctgcc tggcctgcag gcagggcccc
     2581 aggatgctct gcccagctgg tggggacccc tggcccccgt gagtgctggg ctctgctggg
     2641 cggcgaagga gtcagagctg agaggggacc gagttccccc acccattccc ccggggagac
     2701 atcttcccag ccctgccctt cctgcctgcc cgcagacggc ccctgctcaa ggaatggggc
     2761 agggcctccc tcagttcttg gctggggctc ttccggctgc cccgcgggac ctccagcata
     2821 agacggtggg tcccctgaag agtttttgtt tctctccagg ggaagggaga ggagggggac
     2881 catcgaggtg gccagtggac accctgtcag gactgccacc ctagcagtgg ggtggtggca
     2941 tcaggcctgt ccctggcagg tacagg
//
LOCUS       XM_032654045            3039 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type VIII alpha 2 chain
            (COL8A2), transcript variant X3, mRNA.
ACCESSION   XM_032654045
VERSION     XM_032654045.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3039
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3039
                     /gene="COL8A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 13
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116764988"
     CDS             262..2382
                     /gene="COL8A2"
                     /codon_start=1
                     /product="collagen alpha-2(VIII) chain isoform X1"
                     /protein_id="XP_032509936.1"
                     /db_xref="GeneID:116764988"
                     /translation="MRGALTSLSSLPPPLLLLLLLVLGCGLRAAASGGAAGAAGYPPV
                     QYVQPMHKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGK
                     PGTGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGP
                     PGPPGLPGPSGIAVPGKPGPQGVPGPPGFGGEPGPQGEPGPPGDRGLKGENGVGQPGL
                     PGAPGQGGAPGPPGLPGPAGLGKPGLDGFPGAPGDKGESGPPGLPGPRGEPGALGPKG
                     PPGLDGMGVPGSAGVPGPQGPPGAKGEPGTRGPPGLIGPTGYGIPGLPGPKGDRGPAG
                     VPGLLGDRGEPGEDGEQGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGETGPGGPPGV
                     PGIRGDQGPSGLAGKPGLPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQK
                     GDLGLPGQPGLRGPSGIPGLQGPSGPIGPQGLPGLKGEPGLPGAPGEGKVGEPGMAGP
                     TGPPGVPGSPGLTGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVQGAVLGKGTKPR
                     FGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYY
                     FAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPS
                     DQANGLYSTEYIHSSFSGFLLCPT"
     misc_feature    <634..>1320
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <1078..>1773
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    1972..2379
                     /gene="COL8A2"
                     /note="Complement component C1q domain; Region: C1Q;
                     smart00110"
                     /db_xref="CDD:128420"
ORIGIN      
        1 aaacattctt ttcatagttc ctggagcaca gcaaatccgg ctgcttagcc aggaatgcag
       61 agccccctcc tgcaacggca gcaggggctt gggcaaggga gcccctggag gtcaggcaag
      121 acagggcgct ctgcgaagta agaattgctc ccatggtatt gaccaggaag ctgaggcaca
      181 gaccactgag gtcactgctg gccttgtctc tgctggcacc ttcagaggcc cctccgacct
      241 gaaagcaagc ctaaggacgc catgcggggg gctctgacgt ccctgtcttc gctgccgcca
      301 cctctgctgc tgctgctgct gctggtgctg gggtgcgggc tgagggcggc cgccagcggt
      361 ggagccgccg gggcagcggg ctacccgccg gtgcagtacg tgcagcccat gcacaaagga
      421 cccgtggggc cgcccttccg cgagggcaag ggccaatacc tggaaatgcc tctaccgctg
      481 ttgccaatgg acctgaaagg agagcctggt cccccaggaa aacccggacc gcggggtccc
      541 cctggccctc ctggcttccc aggaaaacca ggcactggaa aaccagggct acatgggcag
      601 cctggacccg ctggcccccc tggcttctcc cggatgggca aggctggtcc cccagggctt
      661 ccaggcaagg ttggcccacc agggcagccg gggcttcggg gggagccagg gatacgaggg
      721 gaccagggcc tccgggggcc cccagggccc cctggcctac ctgggccctc aggcattgct
      781 gtccctggaa aaccaggtcc ccagggggtg ccagggcccc caggatttgg gggggagcca
      841 gggccccagg gagagcctgg gcccccgggt gatcgaggcc tcaagggtga aaatggagtg
      901 ggccaaccag ggcttcctgg agccccaggc caggggggtg cccccggacc ccctggtctc
      961 cctggtccag ctggcttggg caaaccaggt ttggatgggt ttcctggggc ccctggagat
     1021 aagggtgagt ctgggcctcc tgggctgcca ggacccaggg gggagccagg agctttgggc
     1081 cccaaagggc cccctgggct ggatggtatg ggggtaccag ggtcagcagg ggtgccaggg
     1141 ccacagggcc caccaggggc caaaggggag ccaggcaccc ggggccctcc tggcctgata
     1201 ggccccactg gctatgggat accagggctg ccaggtccca agggggacag gggcccagct
     1261 ggggtcccgg ggctcttggg ggacaggggc gagccaggtg aggatgggga gcagggggaa
     1321 caggggccac agggccttgg gggcccccct ggacttccgg ggtctgcagg gctacctggc
     1381 cgacgtgggc ccccggggcc taagggggag acggggcctg gaggaccccc aggagtgcct
     1441 ggcattcggg gtgaccaggg gcctagtggc ctggctggga aacctgggct cccaggagag
     1501 agggggcttc caggggctca tggacctcct ggaccgactg ggcccaaagg cgagccaggt
     1561 ttcacgggcc gccctggagg accaggggtg gcaggagccc tggggcagaa gggtgacttg
     1621 gggctccctg ggcagcctgg cctgagaggc ccttctggaa tcccaggact ccaaggtccg
     1681 tctggcccta ttgggccgca gggtctgcca ggcctgaagg gtgaaccagg cctgccgggg
     1741 gcccctggag aggggaaagt gggagaacct ggcatggctg ggcctacagg gcctcctggg
     1801 gtcccaggtt ccccaggact cacgggccct cctgggcctc ccggacctcc cgggccccct
     1861 ggtgcacccg gggccttcga tgagactggc atcgctggcc tgcacctgcc caacggcggc
     1921 gtgcagggag ctgtgctggg caaggggacc aagccccggt ttgggctggg cgagctgtcg
     1981 gcccatgcca cgcccgcctt caccgctgtg ctcacctcac ccttccccgc ctcaggcatg
     2041 cctgtgaagt ttgaccggac cctctacaat ggccacagtg gctacaaccc agccaccggc
     2101 atcttcacct gccccgtggg cggggtctac tactttgctt accacgtgca cgtcaagggc
     2161 accaatgtgt gggtggccct gtacaagaac aacgtgccag ccacctacac ctatgacgag
     2221 tacaagaagg gctacctgga ccaggcgtct gggggggccg tgctccagct gcggcccaac
     2281 gaccaggtct gggtgcagat gccctcggac caggccaatg gcctctactc caccgagtac
     2341 atccactcct ccttttcagg attcttgctg tgccccacat aacccatgct gccccggcct
     2401 cctcctcttt agcggtagag agaccttctc acttacaaag aacctccatt taaagaaaaa
     2461 accaaaggcc aaacagaggc gggagcagag gcggccgcgg ccttggcccg aggagactga
     2521 ctgggtttct ccctccacgc aggctgaggt tgtttctgga agaaggtggc ctgcgttcct
     2581 ctcccccgag tgtctgtgca gcatcggggt tgtgccccct ctcctgccct gcctggcctg
     2641 caggcagggc cccaggatgc tctgcccagc tggtggggac ccctggcccc cgtgagtgct
     2701 gggctctgct gggcggcgaa ggagtcagag ctgagagggg accgagttcc cccacccatt
     2761 cccccgggga gacatcttcc cagccctgcc cttcctgcct gcccgcagac ggcccctgct
     2821 caaggaatgg ggcagggcct ccctcagttc ttggctgggg ctcttccggc tgccccgcgg
     2881 gacctccagc ataagacggt gggtcccctg aagagttttt gtttctctcc aggggaaggg
     2941 agaggagggg gaccatcgag gtggccagtg gacaccctgt caggactgcc accctagcag
     3001 tggggtggtg gcatcaggcc tgtccctggc aggtacagg
//
LOCUS       XM_032654050            2751 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type VIII alpha 2 chain
            (COL8A2), transcript variant X4, mRNA.
ACCESSION   XM_032654050
VERSION     XM_032654050.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2751
                     /gene="COL8A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764988"
     CDS             28..2094
                     /gene="COL8A2"
                     /codon_start=1
                     /product="collagen alpha-2(VIII) chain isoform X2"
                     /protein_id="XP_032509941.1"
                     /db_xref="GeneID:116764988"
                     /translation="MKLTRLILSSALRSKNCSHGIDQEAEAQTTEVTAGLVSAGTFRG
                     PSDLKEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGTGKPGLHGQPGPAGPP
                     GFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGIAVPGKP
                     GPQGVPGPPGFGGEPGPQGEPGPPGDRGLKGENGVGQPGLPGAPGQGGAPGPPGLPGP
                     AGLGKPGLDGFPGAPGDKGESGPPGLPGPRGEPGALGPKGPPGLDGMGVPGSAGVPGP
                     QGPPGAKGEPGTRGPPGLIGPTGYGIPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEQG
                     EQGPQGLGGPPGLPGSAGLPGRRGPPGPKGETGPGGPPGVPGIRGDQGPSGLAGKPGL
                     PGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIP
                     GLQGPSGPIGPQGLPGLKGEPGLPGAPGEGKVGEPGMAGPTGPPGVPGSPGLTGPPGP
                     PGPPGPPGAPGAFDETGIAGLHLPNGGVQGAVLGKGTKPRFGLGELSAHATPAFTAVL
                     TSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYK
                     NNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSG
                     FLLCPT"
     misc_feature    <346..>1032
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <790..>1485
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    1684..2091
                     /gene="COL8A2"
                     /note="Complement component C1q domain; Region: C1Q;
                     smart00110"
                     /db_xref="CDD:128420"
ORIGIN      
        1 tgccaagcac tgcttgaagt cggctacatg aaattaacgc gtttaatcct ctccagcgct
       61 ctgcgaagta agaattgctc ccatggtatt gaccaggaag ctgaggcaca gaccactgag
      121 gtcactgctg gccttgtctc tgctggcacc ttcagaggcc cctccgacct gaaagaaatg
      181 cctctaccgc tgttgccaat ggacctgaaa ggagagcctg gtcccccagg aaaacccgga
      241 ccgcggggtc cccctggccc tcctggcttc ccaggaaaac caggcactgg aaaaccaggg
      301 ctacatgggc agcctggacc cgctggcccc cctggcttct cccggatggg caaggctggt
      361 cccccagggc ttccaggcaa ggttggccca ccagggcagc cggggcttcg gggggagcca
      421 gggatacgag gggaccaggg cctccggggg cccccagggc cccctggcct acctgggccc
      481 tcaggcattg ctgtccctgg aaaaccaggt ccccaggggg tgccagggcc cccaggattt
      541 gggggggagc cagggcccca gggagagcct gggcccccgg gtgatcgagg cctcaagggt
      601 gaaaatggag tgggccaacc agggcttcct ggagccccag gccagggggg tgcccccgga
      661 ccccctggtc tccctggtcc agctggcttg ggcaaaccag gtttggatgg gtttcctggg
      721 gcccctggag ataagggtga gtctgggcct cctgggctgc caggacccag gggggagcca
      781 ggagctttgg gccccaaagg gccccctggg ctggatggta tgggggtacc agggtcagca
      841 ggggtgccag ggccacaggg cccaccaggg gccaaagggg agccaggcac ccggggccct
      901 cctggcctga taggccccac tggctatggg ataccagggc tgccaggtcc caagggggac
      961 aggggcccag ctggggtccc ggggctcttg ggggacaggg gcgagccagg tgaggatggg
     1021 gagcaggggg aacaggggcc acagggcctt gggggccccc ctggacttcc ggggtctgca
     1081 gggctacctg gccgacgtgg gcccccgggg cctaaggggg agacggggcc tggaggaccc
     1141 ccaggagtgc ctggcattcg gggtgaccag gggcctagtg gcctggctgg gaaacctggg
     1201 ctcccaggag agagggggct tccaggggct catggacctc ctggaccgac tgggcccaaa
     1261 ggcgagccag gtttcacggg ccgccctgga ggaccagggg tggcaggagc cctggggcag
     1321 aagggtgact tggggctccc tgggcagcct ggcctgagag gcccttctgg aatcccagga
     1381 ctccaaggtc cgtctggccc tattgggccg cagggtctgc caggcctgaa gggtgaacca
     1441 ggcctgccgg gggcccctgg agaggggaaa gtgggagaac ctggcatggc tgggcctaca
     1501 gggcctcctg gggtcccagg ttccccagga ctcacgggcc ctcctgggcc tcccggacct
     1561 cccgggcccc ctggtgcacc cggggccttc gatgagactg gcatcgctgg cctgcacctg
     1621 cccaacggcg gcgtgcaggg agctgtgctg ggcaagggga ccaagccccg gtttgggctg
     1681 ggcgagctgt cggcccatgc cacgcccgcc ttcaccgctg tgctcacctc acccttcccc
     1741 gcctcaggca tgcctgtgaa gtttgaccgg accctctaca atggccacag tggctacaac
     1801 ccagccaccg gcatcttcac ctgccccgtg ggcggggtct actactttgc ttaccacgtg
     1861 cacgtcaagg gcaccaatgt gtgggtggcc ctgtacaaga acaacgtgcc agccacctac
     1921 acctatgacg agtacaagaa gggctacctg gaccaggcgt ctgggggggc cgtgctccag
     1981 ctgcggccca acgaccaggt ctgggtgcag atgccctcgg accaggccaa tggcctctac
     2041 tccaccgagt acatccactc ctccttttca ggattcttgc tgtgccccac ataacccatg
     2101 ctgccccggc ctcctcctct ttagcggtag agagaccttc tcacttacaa agaacctcca
     2161 tttaaagaaa aaaccaaagg ccaaacagag gcgggagcag aggcggccgc ggccttggcc
     2221 cgaggagact gactgggttt ctccctccac gcaggctgag gttgtttctg gaagaaggtg
     2281 gcctgcgttc ctctcccccg agtgtctgtg cagcatcggg gttgtgcccc ctctcctgcc
     2341 ctgcctggcc tgcaggcagg gccccaggat gctctgccca gctggtgggg acccctggcc
     2401 cccgtgagtg ctgggctctg ctgggcggcg aaggagtcag agctgagagg ggaccgagtt
     2461 cccccaccca ttcccccggg gagacatctt cccagccctg cccttcctgc ctgcccgcag
     2521 acggcccctg ctcaaggaat ggggcagggc ctccctcagt tcttggctgg ggctcttccg
     2581 gctgccccgc gggacctcca gcataagacg gtgggtcccc tgaagagttt ttgtttctct
     2641 ccaggggaag ggagaggagg gggaccatcg aggtggccag tggacaccct gtcaggactg
     2701 ccaccctagc agtggggtgg tggcatcagg cctgtccctg gcaggtacag g
//
LOCUS       XM_032654057            2924 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type VIII alpha 2 chain
            (COL8A2), transcript variant X5, mRNA.
ACCESSION   XM_032654057
VERSION     XM_032654057.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2924
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2924
                     /gene="COL8A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764988"
     CDS             351..2267
                     /gene="COL8A2"
                     /codon_start=1
                     /product="collagen alpha-2(VIII) chain isoform X3"
                     /protein_id="XP_032509948.1"
                     /db_xref="GeneID:116764988"
                     /translation="MPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGTGKPGLHG
                     QPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPS
                     GIAVPGKPGPQGVPGPPGFGGEPGPQGEPGPPGDRGLKGENGVGQPGLPGAPGQGGAP
                     GPPGLPGPAGLGKPGLDGFPGAPGDKGESGPPGLPGPRGEPGALGPKGPPGLDGMGVP
                     GSAGVPGPQGPPGAKGEPGTRGPPGLIGPTGYGIPGLPGPKGDRGPAGVPGLLGDRGE
                     PGEDGEQGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGETGPGGPPGVPGIRGDQGPS
                     GLAGKPGLPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPG
                     LRGPSGIPGLQGPSGPIGPQGLPGLKGEPGLPGAPGEGKVGEPGMAGPTGPPGVPGSP
                     GLTGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVQGAVLGKGTKPRFGLGELSAHA
                     TPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGT
                     NVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTE
                     YIHSSFSGFLLCPT"
     misc_feature    <519..>1205
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <963..>1658
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    1857..2264
                     /gene="COL8A2"
                     /note="Complement component C1q domain; Region: C1Q;
                     smart00110"
                     /db_xref="CDD:128420"
ORIGIN      
        1 ggtagtgaca gcagtttggg ttggaggtgt atgagggaca gccaggcgaa aatgctcagc
       61 tcatagtcaa accaggagtt ggggctcagg agagaggtag ctggaaacag aatgtgggag
      121 tccttggtga tgggattgga actgtgggag tctggggaga gctggaaact gcaggagaaa
      181 acatccagag agaagagaag aggcctgagc cagctccttt gggcaagact gggtctgcag
      241 agtgggcaga gggaaggagc agagaagaat ctgaggaaga gcctttccag gaaggaggaa
      301 agcagggtca caaggcggga gtcagtgctg gagagaagga aacacgagaa atgcctctac
      361 cgctgttgcc aatggacctg aaaggagagc ctggtccccc aggaaaaccc ggaccgcggg
      421 gtccccctgg ccctcctggc ttcccaggaa aaccaggcac tggaaaacca gggctacatg
      481 ggcagcctgg acccgctggc ccccctggct tctcccggat gggcaaggct ggtcccccag
      541 ggcttccagg caaggttggc ccaccagggc agccggggct tcggggggag ccagggatac
      601 gaggggacca gggcctccgg gggcccccag ggccccctgg cctacctggg ccctcaggca
      661 ttgctgtccc tggaaaacca ggtccccagg gggtgccagg gcccccagga tttggggggg
      721 agccagggcc ccagggagag cctgggcccc cgggtgatcg aggcctcaag ggtgaaaatg
      781 gagtgggcca accagggctt cctggagccc caggccaggg gggtgccccc ggaccccctg
      841 gtctccctgg tccagctggc ttgggcaaac caggtttgga tgggtttcct ggggcccctg
      901 gagataaggg tgagtctggg cctcctgggc tgccaggacc caggggggag ccaggagctt
      961 tgggccccaa agggccccct gggctggatg gtatgggggt accagggtca gcaggggtgc
     1021 cagggccaca gggcccacca ggggccaaag gggagccagg cacccggggc cctcctggcc
     1081 tgataggccc cactggctat gggataccag ggctgccagg tcccaagggg gacaggggcc
     1141 cagctggggt cccggggctc ttgggggaca ggggcgagcc aggtgaggat ggggagcagg
     1201 gggaacaggg gccacagggc cttgggggcc cccctggact tccggggtct gcagggctac
     1261 ctggccgacg tgggcccccg gggcctaagg gggagacggg gcctggagga cccccaggag
     1321 tgcctggcat tcggggtgac caggggccta gtggcctggc tgggaaacct gggctcccag
     1381 gagagagggg gcttccaggg gctcatggac ctcctggacc gactgggccc aaaggcgagc
     1441 caggtttcac gggccgccct ggaggaccag gggtggcagg agccctgggg cagaagggtg
     1501 acttggggct ccctgggcag cctggcctga gaggcccttc tggaatccca ggactccaag
     1561 gtccgtctgg ccctattggg ccgcagggtc tgccaggcct gaagggtgaa ccaggcctgc
     1621 cgggggcccc tggagagggg aaagtgggag aacctggcat ggctgggcct acagggcctc
     1681 ctggggtccc aggttcccca ggactcacgg gccctcctgg gcctcccgga cctcccgggc
     1741 cccctggtgc acccggggcc ttcgatgaga ctggcatcgc tggcctgcac ctgcccaacg
     1801 gcggcgtgca gggagctgtg ctgggcaagg ggaccaagcc ccggtttggg ctgggcgagc
     1861 tgtcggccca tgccacgccc gccttcaccg ctgtgctcac ctcacccttc cccgcctcag
     1921 gcatgcctgt gaagtttgac cggaccctct acaatggcca cagtggctac aacccagcca
     1981 ccggcatctt cacctgcccc gtgggcgggg tctactactt tgcttaccac gtgcacgtca
     2041 agggcaccaa tgtgtgggtg gccctgtaca agaacaacgt gccagccacc tacacctatg
     2101 acgagtacaa gaagggctac ctggaccagg cgtctggggg ggccgtgctc cagctgcggc
     2161 ccaacgacca ggtctgggtg cagatgccct cggaccaggc caatggcctc tactccaccg
     2221 agtacatcca ctcctccttt tcaggattct tgctgtgccc cacataaccc atgctgcccc
     2281 ggcctcctcc tctttagcgg tagagagacc ttctcactta caaagaacct ccatttaaag
     2341 aaaaaaccaa aggccaaaca gaggcgggag cagaggcggc cgcggccttg gcccgaggag
     2401 actgactggg tttctccctc cacgcaggct gaggttgttt ctggaagaag gtggcctgcg
     2461 ttcctctccc ccgagtgtct gtgcagcatc ggggttgtgc cccctctcct gccctgcctg
     2521 gcctgcaggc agggccccag gatgctctgc ccagctggtg gggacccctg gcccccgtga
     2581 gtgctgggct ctgctgggcg gcgaaggagt cagagctgag aggggaccga gttcccccac
     2641 ccattccccc ggggagacat cttcccagcc ctgcccttcc tgcctgcccg cagacggccc
     2701 ctgctcaagg aatggggcag ggcctccctc agttcttggc tggggctctt ccggctgccc
     2761 cgcgggacct ccagcataag acggtgggtc ccctgaagag tttttgtttc tctccagggg
     2821 aagggagagg agggggacca tcgaggtggc cagtggacac cctgtcagga ctgccaccct
     2881 agcagtgggg tggtggcatc aggcctgtcc ctggcaggta cagg
//
LOCUS       XM_032654062            2815 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type VIII alpha 2 chain
            (COL8A2), transcript variant X6, mRNA.
ACCESSION   XM_032654062
VERSION     XM_032654062.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2815
                     /gene="COL8A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116764988"
     CDS             242..2158
                     /gene="COL8A2"
                     /codon_start=1
                     /product="collagen alpha-2(VIII) chain isoform X3"
                     /protein_id="XP_032509953.1"
                     /db_xref="GeneID:116764988"
                     /translation="MPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGTGKPGLHG
                     QPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPS
                     GIAVPGKPGPQGVPGPPGFGGEPGPQGEPGPPGDRGLKGENGVGQPGLPGAPGQGGAP
                     GPPGLPGPAGLGKPGLDGFPGAPGDKGESGPPGLPGPRGEPGALGPKGPPGLDGMGVP
                     GSAGVPGPQGPPGAKGEPGTRGPPGLIGPTGYGIPGLPGPKGDRGPAGVPGLLGDRGE
                     PGEDGEQGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGETGPGGPPGVPGIRGDQGPS
                     GLAGKPGLPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPG
                     LRGPSGIPGLQGPSGPIGPQGLPGLKGEPGLPGAPGEGKVGEPGMAGPTGPPGVPGSP
                     GLTGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVQGAVLGKGTKPRFGLGELSAHA
                     TPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGT
                     NVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTE
                     YIHSSFSGFLLCPT"
     misc_feature    <410..>1096
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <854..>1549
                     /gene="COL8A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    1748..2155
                     /gene="COL8A2"
                     /note="Complement component C1q domain; Region: C1Q;
                     smart00110"
                     /db_xref="CDD:128420"
ORIGIN      
        1 tcttttcata gttcctggag cacagcaaat ccggctgctt agccaggaat gcagagcccc
       61 ctcctgcaac ggcagcaggg gcttgggcaa gggagcccct ggaggtcagg caagacaggg
      121 cgctctgcga agtaagaatt gctcccatgg tattgaccag gaagctgagg cacagaccac
      181 tgaggtcact gctggccttg tctctgctgg caccttcaga ggcccctccg acctgaaaga
      241 aatgcctcta ccgctgttgc caatggacct gaaaggagag cctggtcccc caggaaaacc
      301 cggaccgcgg ggtccccctg gccctcctgg cttcccagga aaaccaggca ctggaaaacc
      361 agggctacat gggcagcctg gacccgctgg cccccctggc ttctcccgga tgggcaaggc
      421 tggtccccca gggcttccag gcaaggttgg cccaccaggg cagccggggc ttcgggggga
      481 gccagggata cgaggggacc agggcctccg ggggccccca gggccccctg gcctacctgg
      541 gccctcaggc attgctgtcc ctggaaaacc aggtccccag ggggtgccag ggcccccagg
      601 atttgggggg gagccagggc cccagggaga gcctgggccc ccgggtgatc gaggcctcaa
      661 gggtgaaaat ggagtgggcc aaccagggct tcctggagcc ccaggccagg ggggtgcccc
      721 cggaccccct ggtctccctg gtccagctgg cttgggcaaa ccaggtttgg atgggtttcc
      781 tggggcccct ggagataagg gtgagtctgg gcctcctggg ctgccaggac ccagggggga
      841 gccaggagct ttgggcccca aagggccccc tgggctggat ggtatggggg taccagggtc
      901 agcaggggtg ccagggccac agggcccacc aggggccaaa ggggagccag gcacccgggg
      961 ccctcctggc ctgataggcc ccactggcta tgggatacca gggctgccag gtcccaaggg
     1021 ggacaggggc ccagctgggg tcccggggct cttgggggac aggggcgagc caggtgagga
     1081 tggggagcag ggggaacagg ggccacaggg ccttgggggc ccccctggac ttccggggtc
     1141 tgcagggcta cctggccgac gtgggccccc ggggcctaag ggggagacgg ggcctggagg
     1201 acccccagga gtgcctggca ttcggggtga ccaggggcct agtggcctgg ctgggaaacc
     1261 tgggctccca ggagagaggg ggcttccagg ggctcatgga cctcctggac cgactgggcc
     1321 caaaggcgag ccaggtttca cgggccgccc tggaggacca ggggtggcag gagccctggg
     1381 gcagaagggt gacttggggc tccctgggca gcctggcctg agaggccctt ctggaatccc
     1441 aggactccaa ggtccgtctg gccctattgg gccgcagggt ctgccaggcc tgaagggtga
     1501 accaggcctg ccgggggccc ctggagaggg gaaagtggga gaacctggca tggctgggcc
     1561 tacagggcct cctggggtcc caggttcccc aggactcacg ggccctcctg ggcctcccgg
     1621 acctcccggg ccccctggtg cacccggggc cttcgatgag actggcatcg ctggcctgca
     1681 cctgcccaac ggcggcgtgc agggagctgt gctgggcaag gggaccaagc cccggtttgg
     1741 gctgggcgag ctgtcggccc atgccacgcc cgccttcacc gctgtgctca cctcaccctt
     1801 ccccgcctca ggcatgcctg tgaagtttga ccggaccctc tacaatggcc acagtggcta
     1861 caacccagcc accggcatct tcacctgccc cgtgggcggg gtctactact ttgcttacca
     1921 cgtgcacgtc aagggcacca atgtgtgggt ggccctgtac aagaacaacg tgccagccac
     1981 ctacacctat gacgagtaca agaagggcta cctggaccag gcgtctgggg gggccgtgct
     2041 ccagctgcgg cccaacgacc aggtctgggt gcagatgccc tcggaccagg ccaatggcct
     2101 ctactccacc gagtacatcc actcctcctt ttcaggattc ttgctgtgcc ccacataacc
     2161 catgctgccc cggcctcctc ctctttagcg gtagagagac cttctcactt acaaagaacc
     2221 tccatttaaa gaaaaaacca aaggccaaac agaggcggga gcagaggcgg ccgcggcctt
     2281 ggcccgagga gactgactgg gtttctccct ccacgcaggc tgaggttgtt tctggaagaa
     2341 ggtggcctgc gttcctctcc cccgagtgtc tgtgcagcat cggggttgtg ccccctctcc
     2401 tgccctgcct ggcctgcagg cagggcccca ggatgctctg cccagctggt ggggacccct
     2461 ggcccccgtg agtgctgggc tctgctgggc ggcgaaggag tcagagctga gaggggaccg
     2521 agttccccca cccattcccc cggggagaca tcttcccagc cctgcccttc ctgcctgccc
     2581 gcagacggcc cctgctcaag gaatggggca gggcctccct cagttcttgg ctggggctct
     2641 tccggctgcc ccgcgggacc tccagcataa gacggtgggt cccctgaaga gtttttgttt
     2701 ctctccaggg gaagggagag gagggggacc atcgaggtgg ccagtggaca ccctgtcagg
     2761 actgccaccc tagcagtggg gtggtggcat caggcctgtc cctggcaggt acagg
//
LOCUS       XM_032654071            1642 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADP-ribosylserine hydrolase (ADPRS),
            mRNA.
ACCESSION   XM_032654071
VERSION     XM_032654071.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1642
                     /gene="ADPRS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 2 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765030"
     CDS             13..1110
                     /gene="ADPRS"
                     /codon_start=1
                     /product="ADP-ribose glycohydrolase ARH3"
                     /protein_id="XP_032509962.1"
                     /db_xref="GeneID:116765030"
                     /translation="MAAAAVMTAAGCGGAGAARSLSRFRGCLAGALLGDCVGAVYEAR
                     DTVDLTSVLRRVQDLEPDPGSPGSARTETLCYTDDTAMARALARSLLAKGAFDEVDMA
                     HRFAQEYKKDPDRGYGAGVITVFRKLLSPKCRDVFEPARAQFNGKGSYGNGGAMRVAG
                     ISLAYSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLEQLLG
                     HMEELESDAQSVSDARELGMEERPYSSRLKKIGELLEQDSVTREEVVSELGNGIAAFE
                     SVPTAIYCFLRCMEPDPEIPSAFNSLQRTLIYSISLGGDTDTIATMAGAIAGAYYGME
                     QVPESWQQSCEGYEETDVLAQSLHRVFQKNL"
     misc_feature    73..1095
                     /gene="ADPRS"
                     /note="ADP-ribosylglycohydrolase [Posttranslational
                     modification, protein turnover, chaperones]; Region: DraG;
                     COG1397"
                     /db_xref="CDD:441007"
ORIGIN      
        1 tggtacgcgc ggatggcggc ggctgcggtg atgacggcgg caggctgcgg aggggctggg
       61 gcggctcgct ccctctcccg cttccgcggc tgcctggcgg gcgcgctgct cggggactgc
      121 gtgggcgccg tctacgaggc gcgcgacacc gtcgacctga cgtcagtgct gcgtcgggtc
      181 caggacctgg agccggaccc cggctcgccg gggagcgcgc ggacagaaac attgtgctac
      241 acggacgaca cggccatggc cagggcgctg gcgcggtccc tgctggccaa gggggccttc
      301 gacgaggtgg acatggcgca caggtttgcg caggagtaca agaaagaccc tgaccggggt
      361 tatggtgctg gagtgatcac cgtcttcagg aagctcctga gccccaagtg ccgtgatgtc
      421 ttcgagcctg cccgggccca gtttaatggc aaaggctcct acggcaacgg gggcgccatg
      481 cgggtggccg gcatctccct ggcctatagc agtgtccagg atgtgcagaa gtttgcccgg
      541 ctctcggccc agctgacaca cgcctcctcc ctgggttaca acggtgccat cctgcaggcc
      601 ctggctgtgc acctggcttt gcagggtgag tcgtccagtg agcacttcct tgaacaactc
      661 ctgggccaca tggaggagct ggagagtgat gcccagtctg tgtcagatgc ccgggagttg
      721 ggcatggagg agcgtccata ctccagccga ctgaagaaga ttggggagct tctagagcag
      781 gactcagtga ccagagagga ggtggtgtcc gagctaggga acggcatcgc tgcctttgag
      841 tctgtgccca ccgccatcta ttgcttcctg cgctgcatgg agcccgaccc cgagatcccc
      901 tctgccttca acagcctcca gaggactctc atctactcca tctcgcttgg tggggacaca
      961 gacaccattg ccaccatggc cggggccatt gctggcgcct actatggcat ggaacaggtg
     1021 ccagagagct ggcagcaaag ctgtgagggc tatgaggaga ctgacgtcct ggcccagagc
     1081 ctgcaccggg tcttccagaa gaatctgtga gggccacagc tccgccatac ccagcaggac
     1141 caactacagc tcggatcgga aaccctgggc tcccttaggc ttggctccct gcctcgacct
     1201 tcctgcggtg tggccggagt gcacccttgg ggctggggac tcctctgggg aggtcactga
     1261 acagcgaggg agggacgggt gccttctggt gctgggttcc tggcttctgc agagccttgg
     1321 tgctcctgag tcagacataa gggaccgggg caggttttgt tttggagcag tacttgtggt
     1381 gttttccttt attatctagg acatgggatt tggggaggtg gaagtgatct gtggcatcgt
     1441 ttctccttgt tgggatttaa ccagtttgcc aggatgcctg cctttgactg cacagggccc
     1501 ccaagcgcca agtttatacg gatcaggagg tggacacgtg aatctagctg atctagatgc
     1561 acacctggcc cttggctgtc atgggtcttg ttaacagctt cccgacgaag ttacagagca
     1621 ataaacagtt ctttaaatcc ca
//
LOCUS       XR_004353111             736 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116765041
            (LOC116765041), ncRNA.
ACCESSION   XR_004353111
VERSION     XR_004353111.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..736
                     /gene="LOC116765041"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116765041"
     ncRNA           1..736
                     /ncRNA_class="lncRNA"
                     /gene="LOC116765041"
                     /product="uncharacterized LOC116765041"
                     /db_xref="GeneID:116765041"
ORIGIN      
        1 catttggttg ggaaatgact gaaccaggcc agttttggta gctccgcttc cccctgggtg
       61 gggcagcaac cccaataaaa agggcctctg ctgcacgaca gctatcctcc tgctactcga
      121 gttccgattg actttggaga acctgatata aagattccag aaagatgtct tctcaagagc
      181 agcagtgcaa gcagcagtgc aagatacctc cagtgtgccc aacacagtgc cctgatcctt
      241 gctcacctaa aaagggtaca gacccttgcc cacctataaa gtgcactgag aaatgcactc
      301 ctgtgccacc tccccagcaa tgccagcaga agtgcccacc caaggacaag taacagcttc
      361 aggttttatc tgcctctgga aaggataagc acaatcagct catctagttc cacagctcca
      421 ccttcatctt ctcttcaaag cctatcatgg atacagaaga agctttccac ccttcagcct
      481 gcagtgtgcg ttggggattc ctgacggaca gaggtttcct atctgagtct gctatgctga
      541 ttccctctgg gaggtgtccg aaaaagcatc ccagagcctc agagggaagg gcagtatctc
      601 tcctcttgag tgtcctctga ggattctctc agagtcttct gtgtgtatct gtcacatggg
      661 cagtggtttc tgccagatga gcagttgtta cttatcctcc atttcctgaa taaaatacaa
      721 ttttttttgg ggatgg
//
LOCUS       XM_032654086            1706 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X1, mRNA.
ACCESSION   XM_032654086
VERSION     XM_032654086.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1706
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1706
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 15
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             234..1247
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X1"
                     /protein_id="XP_032509977.1"
                     /db_xref="GeneID:116765048"
                     /translation="MATASPAADGGRGRPWEGGLVSWPPAPPLTIPWTWMGPSWGQHP
                     GHWGFPALTEPSASPAASLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVL
                     GSHLFSPCGVPEFCSISTRKLAAHSFGASMAAMMSFPPQRYHYFLVLDFEATCDKPQI
                     HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQ
                     QVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLK
                     KAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS
                     KPF"
     misc_feature    669..1202
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(681..692,696..698,828..830,966..980,990..992,
                     1152..1154,1167..1169)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(681..692,696..698,828..830,966..980,990..992,
                     1152..1154,1167..1169)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
     misc_feature    order(681..683,687..689,978..980,1152..1154,1167..1169)
                     /gene="ERI3"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99836"
ORIGIN      
        1 gtgagtcggt gtgttgtgga ctcgtggtgc tggctgccgc tgttgaggcg gccgggaacg
       61 ggcggtgggg agcgggcgga gctggccctg cctctgcctg gccggcgccg cagtcggcgc
      121 gggccgcgcc cgccgccgta aactgccctg agcgcctgct caggccgagg gagaagtcgg
      181 ggcctgcacc tggagggagc ctgccgcgct ggccccgagg agggggcgtt gccatggcga
      241 cagcctctcc cgctgctgac ggggggcggg ggcggccctg ggaaggaggg ctggtctcct
      301 ggccccctgc tcctcccctt acaattccct ggacttggat gggcccgagt tgggggcaac
      361 accccgggca ttggggcttt ccagctctca cagaaccttc agcatcccca gcggccagtc
      421 ttggcatctt cgaagtaagg agagttttag atgcttctgg atgttcaatg ctagcacctt
      481 tacagactgg agcagctcga ttttcttcat atttactttc aagagcaaga aaagtgctgg
      541 gctcccactt attttctccc tgtggtgttc cggagttctg ctccatatcc accagaaagc
      601 tggcggccca cagctttggc gcatccatgg cggcaatgat gtccttccct ccccagaggt
      661 atcactactt tttagtgctg gactttgagg ccacgtgtga caagccgcag attcatcctc
      721 aggaaatcat cgagttcccc atcctgaagc taaatggccg gaccatggag attgagtcta
      781 cctttcacat gtatgtccag cccgtagtcc atccacagct tactcctttc tgtacagagc
      841 tcaccgggat tattcaagcc atggtggatg gtcagccaag cctgcagcaa gtgctggaga
      901 gggtcgatga gtggatggcg aaggaaggcc tcttagatcc aaacgtcaag tcaatttttg
      961 tcacctgtgg agactgggac ttaaaagtca tgctcccggg ccagtgccag tacttgggct
     1021 tgccagtggc agattacttc aagcagtgga ttaatctgaa aaaggcttac agcttcgcca
     1081 tgggctgctg gcccaagaat ggacttctag acatgaacaa gggcctcagc ctgcaacaca
     1141 taggccggcc ccacagcggc attgatgact gcaagaacat cgccaacatc atgaagacac
     1201 tcgcataccg aggcttcatc ttcaagcaga catcaaagcc gttctgactg gccgaggatg
     1261 ggatggggca ggacagggta gctgcttggc ccagcccaaa accctcctct ccctcaccag
     1321 aggggcaaag ggagagtggc acagctctac gtccagagtg tcccccagcc cgccctgtgg
     1381 gcttgtgtcc tgggtaaggc ttggccactt ggcccctctg gaacagacac tttgtgcccc
     1441 ctaccccctc ccctcaacct cagcccagta tcaggccctc ccattgtggg cctgggctgg
     1501 gggacctcct cctcactgtc tcctcccagt acaggcttct tgctggggcc accaagcccc
     1561 cctgtgcccc ctcccatctg tagtgcatgg tgtgtggtgc ccccagggct ccaggacaga
     1621 tcaggcccca ccttgtgtct acccccatcc ccgctgtgaa cgtgccactg aataaagtcg
     1681 gggaaacgag gccctgtgtg tgtgtg
//
LOCUS       XM_032654095            1573 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X2, mRNA.
ACCESSION   XM_032654095
VERSION     XM_032654095.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1573
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             107..1114
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X2"
                     /protein_id="XP_032509986.1"
                     /db_xref="GeneID:116765048"
                     /translation="MATASPAADGGRGRPWEGGLVSWPPAPPLTIPWTWMGPSWGQHP
                     GHWGFPALTEPSASPAASLGIFEVRRDASGCSMLAPLQTGAARFSSYLLSRARKVLGS
                     HLFSPCGVPEFCSISTRKLAAHSFGASMAAMMSFPPQRYHYFLVLDFEATCDKPQIHP
                     QEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQV
                     LERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKA
                     YSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKP
                     F"
     misc_feature    536..1069
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(548..559,563..565,695..697,833..847,857..859,
                     1019..1021,1034..1036)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(548..559,563..565,695..697,833..847,857..859,
                     1019..1021,1034..1036)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
     misc_feature    order(548..550,554..556,845..847,1019..1021,1034..1036)
                     /gene="ERI3"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99836"
ORIGIN      
        1 gcccgccgcc gtaaactgcc ctgagcgcct gctcaggccg agggagaagt cggggcctgc
       61 acctggaggg agcctgccgc gctggccccg aggagggggc gttgccatgg cgacagcctc
      121 tcccgctgct gacggggggc gggggcggcc ctgggaagga gggctggtct cctggccccc
      181 tgctcctccc cttacaattc cctggacttg gatgggcccg agttgggggc aacaccccgg
      241 gcattggggc tttccagctc tcacagaacc ttcagcatcc ccagcggcca gtcttggcat
      301 cttcgaagta aggagagatg cttctggatg ttcaatgcta gcacctttac agactggagc
      361 agctcgattt tcttcatatt tactttcaag agcaagaaaa gtgctgggct cccacttatt
      421 ttctccctgt ggtgttccgg agttctgctc catatccacc agaaagctgg cggcccacag
      481 ctttggcgca tccatggcgg caatgatgtc cttccctccc cagaggtatc actacttttt
      541 agtgctggac tttgaggcca cgtgtgacaa gccgcagatt catcctcagg aaatcatcga
      601 gttccccatc ctgaagctaa atggccggac catggagatt gagtctacct ttcacatgta
      661 tgtccagccc gtagtccatc cacagcttac tcctttctgt acagagctca ccgggattat
      721 tcaagccatg gtggatggtc agccaagcct gcagcaagtg ctggagaggg tcgatgagtg
      781 gatggcgaag gaaggcctct tagatccaaa cgtcaagtca atttttgtca cctgtggaga
      841 ctgggactta aaagtcatgc tcccgggcca gtgccagtac ttgggcttgc cagtggcaga
      901 ttacttcaag cagtggatta atctgaaaaa ggcttacagc ttcgccatgg gctgctggcc
      961 caagaatgga cttctagaca tgaacaaggg cctcagcctg caacacatag gccggcccca
     1021 cagcggcatt gatgactgca agaacatcgc caacatcatg aagacactcg cataccgagg
     1081 cttcatcttc aagcagacat caaagccgtt ctgactggcc gaggatggga tggggcagga
     1141 cagggtagct gcttggccca gcccaaaacc ctcctctccc tcaccagagg ggcaaaggga
     1201 gagtggcaca gctctacgtc cagagtgtcc cccagcccgc cctgtgggct tgtgtcctgg
     1261 gtaaggcttg gccacttggc ccctctggaa cagacacttt gtgcccccta ccccctcccc
     1321 tcaacctcag cccagtatca ggccctccca ttgtgggcct gggctggggg acctcctcct
     1381 cactgtctcc tcccagtaca ggcttcttgc tggggccacc aagcccccct gtgccccctc
     1441 ccatctgtag tgcatggtgt gtggtgcccc cagggctcca ggacagatca ggccccacct
     1501 tgtgtctacc cccatccccg ctgtgaacgt gccactgaat aaagtcgggg aaacgaggcc
     1561 ctgtgtgtgt gtg
//
LOCUS       XM_032654104            1467 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X3, mRNA.
ACCESSION   XM_032654104
VERSION     XM_032654104.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1467
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116765048"
     CDS             111..971
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X3"
                     /protein_id="XP_032509995.1"
                     /db_xref="GeneID:116765048"
                     /translation="MATASPAADGGRGRPWEGGLVSWPPAPPLTIPWTWMGPSWGQHP
                     GHWGFPALTEPSASPAASLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVL
                     GSHLFSPCGVPEFCSISTRKLAAHSFGASMAAMMSFPPQRYHYFLVLDFEATCDKPQI
                     HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQ
                     QVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLK
                     KMTARTSPTS"
     misc_feature    546..>953
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(558..569,573..575,705..707,843..857,867..869)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(558..569,573..575,705..707,843..857,867..869)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
ORIGIN      
        1 ccgcgcccgc cgccgtaaac tgccctgagc gcctgctcag gccgagggag aagtcggggc
       61 ctgcacctgg agggagcctg ccgcgctggc cccgaggagg gggcgttgcc atggcgacag
      121 cctctcccgc tgctgacggg gggcgggggc ggccctggga aggagggctg gtctcctggc
      181 cccctgctcc tccccttaca attccctgga cttggatggg cccgagttgg gggcaacacc
      241 ccgggcattg gggctttcca gctctcacag aaccttcagc atccccagcg gccagtcttg
      301 gcatcttcga agtaaggaga gttttagatg cttctggatg ttcaatgcta gcacctttac
      361 agactggagc agctcgattt tcttcatatt tactttcaag agcaagaaaa gtgctgggct
      421 cccacttatt ttctccctgt ggtgttccgg agttctgctc catatccacc agaaagctgg
      481 cggcccacag ctttggcgca tccatggcgg caatgatgtc cttccctccc cagaggtatc
      541 actacttttt agtgctggac tttgaggcca cgtgtgacaa gccgcagatt catcctcagg
      601 aaatcatcga gttccccatc ctgaagctaa atggccggac catggagatt gagtctacct
      661 ttcacatgta tgtccagccc gtagtccatc cacagcttac tcctttctgt acagagctca
      721 ccgggattat tcaagccatg gtggatggtc agccaagcct gcagcaagtg ctggagaggg
      781 tcgatgagtg gatggcgaag gaaggcctct tagatccaaa cgtcaagtca atttttgtca
      841 cctgtggaga ctgggactta aaagtcatgc tcccgggcca gtgccagtac ttgggcttgc
      901 cagtggcaga ttacttcaag cagtggatta atctgaaaaa gatgactgca agaacatcgc
      961 caacatcatg aagacactcg cataccgagg cttcatcttc aagcagacat caaagccgtt
     1021 ctgactggcc gaggatggga tggggcagga cagggtagct gcttggccca gcccaaaacc
     1081 ctcctctccc tcaccagagg ggcaaaggga gagtggcaca gctctacgtc cagagtgtcc
     1141 cccagcccgc cctgtgggct tgtgtcctgg gtaaggcttg gccacttggc ccctctggaa
     1201 cagacacttt gtgcccccta ccccctcccc tcaacctcag cccagtatca ggccctccca
     1261 ttgtgggcct gggctggggg acctcctcct cactgtctcc tcccagtaca ggcttcttgc
     1321 tggggccacc aagcccccct gtgccccctc ccatctgtag tgcatggtgt gtggtgcccc
     1381 cagggctcca ggacagatca ggccccacct tgtgtctacc cccatccccg ctgtgaacgt
     1441 gccactgaat aaagtcgggg aaacgag
//
LOCUS       XM_032654112            4136 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X4, mRNA.
ACCESSION   XM_032654112
VERSION     XM_032654112.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4136
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4136
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             2898..3677
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X4"
                     /protein_id="XP_032510003.1"
                     /db_xref="GeneID:116765048"
                     /translation="MLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRK
                     LAAHSFGASMAAMMSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
                     ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNV
                     KSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK
                     GLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF"
     misc_feature    3099..3632
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(3111..3122,3126..3128,3258..3260,3396..3410,
                     3420..3422,3582..3584,3597..3599)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(3111..3122,3126..3128,3258..3260,3396..3410,
                     3420..3422,3582..3584,3597..3599)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
     misc_feature    order(3111..3113,3117..3119,3408..3410,3582..3584,
                     3597..3599)
                     /gene="ERI3"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99836"
ORIGIN      
        1 gcgcggaggt gagtcggtgt gttgtggact cgtggtgctg gctgccgctg ttgaggcggc
       61 cgggaacggg cggtggggag cgggcggagc tggccctgcc tctgcctggc cggcgccgca
      121 gtcggcgcgg gccgcgcccg ccgccgtaaa ctgccctgag cgcctgctca ggccgaggga
      181 gaagtcgggg cctgcacctg gagggagcct gccgcgctgg ccccgaggag ggggcgttgc
      241 catggcgaca gcctctcccg ctgctgacgg ggggcggggg cggccctggg aaggagggct
      301 ggtctcctgg ccccctgctc ctccccttac aattccctgg acttggatgg gcccgagttg
      361 ggggcaacac cccggggtgg gtgatgcggc gaggcccccc cagattgggc cctggtaatg
      421 catgcggggt gagggtcgcg gcgcgcagtt tgtgcagcct ggggtgctgg cccatgtgct
      481 caccctggat gcatggtcta ctgagaaacg tttaggcgga gaaggagagg ggcagggctt
      541 tgaaagacag gctgggtgag gtgattaagc atgctgactt cctacctggg attgcttagg
      601 aggaggaaga gagctttgac caaagaggat agaaaactag caaggagatg gtagagagaa
      661 cattcccttt accctctccc caacacacac acagacacac aagcttagca gtttacttgt
      721 ttttgtaaat ctgttgcggt ggtcgtagtt acggtggaag gattgaataa ggggcctaac
      781 ttggctagct ttctgtttgc ttttcctgca aatgctccag caacaggtgt tttcttaaaa
      841 caaaaaggca tgaacttgga ttggggcttg attgcgagtt cttgcaaaat ataactgctc
      901 cttgttgact tggaagatgc tgaacgtggc ttctcattgg gggtttggat tctgtcctta
      961 gggctggact ttgtaaactg atagtaccca tcattctctc tgctataggt ctctggccac
     1021 ttctctggta ttagttcttg tcagacattt tatcagtttc cccggcgaag ggcaaaatac
     1081 caggaatccc attggctaaa gaccgtacac tatttgaacg atagtaggtt gtgattggct
     1141 gaatgatttt tgattgtaga gtttctacca gaaattggct tcatcaaatt ctgctttatt
     1201 ctgactttat catacacagc atgccttgtt ttggtgggtt catgcctgga gcttaagtat
     1261 attatacctg aatcccctag catttgaaag ccaatttata aacagggact tggagtgtga
     1321 ctccactaat gtgtgtgtct gtgatcttgg ttagaaaccc acttggctgc ctttcgtggg
     1381 gggagttggg ggaggtagct gccgggaagt gattgataag gtttccttta tggattctgt
     1441 ggtgcttcac tggagctcag agcactttgg caacttaagc actccaaatt aaaagctcat
     1501 taacaattcc tgcccaaaga tcctgtaaat aatcggctag ctaggtcaca gagcttggct
     1561 gagagctctc cttgcaactt gaaatttcca aataaaagtg cttttattcc ctttcatttt
     1621 gaaaagtgtt ttctttgcgg tggggtaggt tggcgagtgg catttttcca ggggatctga
     1681 gtagaataaa gtgttaaatg tgtagagtgg tagaaggaat agattggttc caaacctagg
     1741 tgtttctttg tgcaagggcg ttgctagctt acaagggcac ttcggcaact tctaatcctt
     1801 ttgaagatct gatgagtaaa aggtgcaaga tttaagtgat ctgaagagaa accggagtat
     1861 gaattaagtg ataaatatga taggcgtcca ttgatgattt gatttggggt ttgattacct
     1921 tgactttttt agaacttgag gcagacctag atatatcctg caagtgtttc ctggtctgtg
     1981 tggccatttg cagtatggcc tgtggctttg tggcaaccag tgtttccccc aatccctgct
     2041 tcagtgcctg agttctgaat attgtcagcc tttactagga tcccctcctt ggctagacta
     2101 ggattcggga ttatccagag agccacgact tcatggccat ctctctcagt ccaagctcag
     2161 atattgtaaa tgtttagtat ttccaggaga taaacctcct taggaagaaa agtatgccac
     2221 tagagaagat gaaattcatc attgcaaaaa tatatattgt tgaccattga aaaaacgcag
     2281 aggttagggt aaccgactcc ccacacagtt gaaaatctgc ttataacttt tgactcccca
     2341 aaaatgtaac tactaatagc gttgaccaga agccttactg ataacataag cagttgatta
     2401 acacatattt tgtatgttat gtgtatatct acttatattt aatgcattca cgacctccta
     2461 actttttctt aattcttttg gtatttctag gctatgtggt ttatctgcgg gctttttcaa
     2521 attgtcacaa atctccaaaa aaaatctccc aatatattta tttattgaga aacatctgca
     2581 cataagaagt ggacctgcgc agttcaaatc tgtgttgttc aaaggtcaac tgtagtacta
     2641 gtagcttctg aaagctctgt actggcactg tgcttccaca tagataactg ttatcccaaa
     2701 gtagtttgag tttaggagtt tgaagtatgg tgtgatcttt aagttgtttc aaacagtatt
     2761 gaaatagagt tgttgcagag atctgtattt atccacagca ttggggcttt ccagctctca
     2821 cagaaccttc agcatcccca gcggccagtc ttggcatctt cgaagtaagg agagttttag
     2881 atgcttctgg atgttcaatg ctagcacctt tacagactgg agcagctcga ttttcttcat
     2941 atttactttc aagagcaaga aaagtgctgg gctcccactt attttctccc tgtggtgttc
     3001 cggagttctg ctccatatcc accagaaagc tggcggccca cagctttggc gcatccatgg
     3061 cggcaatgat gtccttccct ccccagaggt atcactactt tttagtgctg gactttgagg
     3121 ccacgtgtga caagccgcag attcatcctc aggaaatcat cgagttcccc atcctgaagc
     3181 taaatggccg gaccatggag attgagtcta cctttcacat gtatgtccag cccgtagtcc
     3241 atccacagct tactcctttc tgtacagagc tcaccgggat tattcaagcc atggtggatg
     3301 gtcagccaag cctgcagcaa gtgctggaga gggtcgatga gtggatggcg aaggaaggcc
     3361 tcttagatcc aaacgtcaag tcaatttttg tcacctgtgg agactgggac ttaaaagtca
     3421 tgctcccggg ccagtgccag tacttgggct tgccagtggc agattacttc aagcagtgga
     3481 ttaatctgaa aaaggcttac agcttcgcca tgggctgctg gcccaagaat ggacttctag
     3541 acatgaacaa gggcctcagc ctgcaacaca taggccggcc ccacagcggc attgatgact
     3601 gcaagaacat cgccaacatc atgaagacac tcgcataccg aggcttcatc ttcaagcaga
     3661 catcaaagcc gttctgactg gccgaggatg ggatggggca ggacagggta gctgcttggc
     3721 ccagcccaaa accctcctct ccctcaccag aggggcaaag ggagagtggc acagctctac
     3781 gtccagagtg tcccccagcc cgccctgtgg gcttgtgtcc tgggtaaggc ttggccactt
     3841 ggcccctctg gaacagacac tttgtgcccc ctaccccctc ccctcaacct cagcccagta
     3901 tcaggccctc ccattgtggg cctgggctgg gggacctcct cctcactgtc tcctcccagt
     3961 acaggcttct tgctggggcc accaagcccc cctgtgcccc ctcccatctg tagtgcatgg
     4021 tgtgtggtgc ccccagggct ccaggacaga tcaggcccca ccttgtgtct acccccatcc
     4081 ccgctgtgaa cgtgccactg aataaagtcg gggaaacgag gccctgtgtg tgtgtg
//
LOCUS       XM_032654121            1352 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X5, mRNA.
ACCESSION   XM_032654121
VERSION     XM_032654121.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1352
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1352
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             114..893
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X4"
                     /protein_id="XP_032510012.1"
                     /db_xref="GeneID:116765048"
                     /translation="MLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRK
                     LAAHSFGASMAAMMSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
                     ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNV
                     KSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK
                     GLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF"
     misc_feature    315..848
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(327..338,342..344,474..476,612..626,636..638,
                     798..800,813..815)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(327..338,342..344,474..476,612..626,636..638,
                     798..800,813..815)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
     misc_feature    order(327..329,333..335,624..626,798..800,813..815)
                     /gene="ERI3"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99836"
ORIGIN      
        1 cagagtgcgc ggagcattgg ggctttccag ctctcacaga accttcagca tccccagcgg
       61 ccagtcttgg catcttcgaa gtaaggagag ttttagatgc ttctggatgt tcaatgctag
      121 cacctttaca gactggagca gctcgatttt cttcatattt actttcaaga gcaagaaaag
      181 tgctgggctc ccacttattt tctccctgtg gtgttccgga gttctgctcc atatccacca
      241 gaaagctggc ggcccacagc tttggcgcat ccatggcggc aatgatgtcc ttccctcccc
      301 agaggtatca ctacttttta gtgctggact ttgaggccac gtgtgacaag ccgcagattc
      361 atcctcagga aatcatcgag ttccccatcc tgaagctaaa tggccggacc atggagattg
      421 agtctacctt tcacatgtat gtccagcccg tagtccatcc acagcttact cctttctgta
      481 cagagctcac cgggattatt caagccatgg tggatggtca gccaagcctg cagcaagtgc
      541 tggagagggt cgatgagtgg atggcgaagg aaggcctctt agatccaaac gtcaagtcaa
      601 tttttgtcac ctgtggagac tgggacttaa aagtcatgct cccgggccag tgccagtact
      661 tgggcttgcc agtggcagat tacttcaagc agtggattaa tctgaaaaag gcttacagct
      721 tcgccatggg ctgctggccc aagaatggac ttctagacat gaacaagggc ctcagcctgc
      781 aacacatagg ccggccccac agcggcattg atgactgcaa gaacatcgcc aacatcatga
      841 agacactcgc ataccgaggc ttcatcttca agcagacatc aaagccgttc tgactggccg
      901 aggatgggat ggggcaggac agggtagctg cttggcccag cccaaaaccc tcctctccct
      961 caccagaggg gcaaagggag agtggcacag ctctacgtcc agagtgtccc ccagcccgcc
     1021 ctgtgggctt gtgtcctggg taaggcttgg ccacttggcc cctctggaac agacactttg
     1081 tgccccctac cccctcccct caacctcagc ccagtatcag gccctcccat tgtgggcctg
     1141 ggctggggga cctcctcctc actgtctcct cccagtacag gcttcttgct ggggccacca
     1201 agcccccctg tgccccctcc catctgtagt gcatggtgtg tggtgccccc agggctccag
     1261 gacagatcag gccccacctt gtgtctaccc ccatccccgc tgtgaacgtg ccactgaata
     1321 aagtcgggga aacgaggccc tgtgtgtgtg tg
//
LOCUS       XM_032654132            1346 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X6, mRNA.
ACCESSION   XM_032654132
VERSION     XM_032654132.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1346
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             108..887
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X4"
                     /protein_id="XP_032510023.1"
                     /db_xref="GeneID:116765048"
                     /translation="MLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRK
                     LAAHSFGASMAAMMSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
                     ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNV
                     KSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK
                     GLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF"
     misc_feature    309..842
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(321..332,336..338,468..470,606..620,630..632,
                     792..794,807..809)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(321..332,336..338,468..470,606..620,630..632,
                     792..794,807..809)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
     misc_feature    order(321..323,327..329,618..620,792..794,807..809)
                     /gene="ERI3"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99836"
ORIGIN      
        1 aaaatgtcta tttacccaag acgccagaat gactcctctg tggttccact aatctggtga
       61 tttggtgctt ccctggtctc tcagttttag atgcttctgg atgttcaatg ctagcacctt
      121 tacagactgg agcagctcga ttttcttcat atttactttc aagagcaaga aaagtgctgg
      181 gctcccactt attttctccc tgtggtgttc cggagttctg ctccatatcc accagaaagc
      241 tggcggccca cagctttggc gcatccatgg cggcaatgat gtccttccct ccccagaggt
      301 atcactactt tttagtgctg gactttgagg ccacgtgtga caagccgcag attcatcctc
      361 aggaaatcat cgagttcccc atcctgaagc taaatggccg gaccatggag attgagtcta
      421 cctttcacat gtatgtccag cccgtagtcc atccacagct tactcctttc tgtacagagc
      481 tcaccgggat tattcaagcc atggtggatg gtcagccaag cctgcagcaa gtgctggaga
      541 gggtcgatga gtggatggcg aaggaaggcc tcttagatcc aaacgtcaag tcaatttttg
      601 tcacctgtgg agactgggac ttaaaagtca tgctcccggg ccagtgccag tacttgggct
      661 tgccagtggc agattacttc aagcagtgga ttaatctgaa aaaggcttac agcttcgcca
      721 tgggctgctg gcccaagaat ggacttctag acatgaacaa gggcctcagc ctgcaacaca
      781 taggccggcc ccacagcggc attgatgact gcaagaacat cgccaacatc atgaagacac
      841 tcgcataccg aggcttcatc ttcaagcaga catcaaagcc gttctgactg gccgaggatg
      901 ggatggggca ggacagggta gctgcttggc ccagcccaaa accctcctct ccctcaccag
      961 aggggcaaag ggagagtggc acagctctac gtccagagtg tcccccagcc cgccctgtgg
     1021 gcttgtgtcc tgggtaaggc ttggccactt ggcccctctg gaacagacac tttgtgcccc
     1081 ctaccccctc ccctcaacct cagcccagta tcaggccctc ccattgtggg cctgggctgg
     1141 gggacctcct cctcactgtc tcctcccagt acaggcttct tgctggggcc accaagcccc
     1201 cctgtgcccc ctcccatctg tagtgcatgg tgtgtggtgc ccccagggct ccaggacaga
     1261 tcaggcccca ccttgtgtct acccccatcc ccgctgtgaa cgtgccactg aataaagtcg
     1321 gggaaacgag gccctgtgtg tgtgtg
//
LOCUS       XM_032654142            2245 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X7, mRNA.
ACCESSION   XM_032654142
VERSION     XM_032654142.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2245
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             112..873
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X5"
                     /protein_id="XP_032510033.1"
                     /db_xref="GeneID:116765048"
                     /translation="MATASPAADGGRGRPWEGGLVSWPPAPPLTIPWTWMGPSWGQHP
                     GHWGFPALTEPSASPAASLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVL
                     GSHLFSPCGVPEFCSISTRKLAAHSFGASMAAMMSFPPQRYHYFLVLDFEATCDKPQI
                     HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQ
                     QVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVI"
     misc_feature    547..>870
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(559..570,574..576,706..708,844..858,868..870)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(559..570,574..576,706..708,844..858,868..870)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
ORIGIN      
        1 gccgcgcccg ccgccgtaaa ctgccctgag cgcctgctca ggccgaggga gaagtcgggg
       61 cctgcacctg gagggagcct gccgcgctgg ccccgaggag ggggcgttgc catggcgaca
      121 gcctctcccg ctgctgacgg ggggcggggg cggccctggg aaggagggct ggtctcctgg
      181 ccccctgctc ctccccttac aattccctgg acttggatgg gcccgagttg ggggcaacac
      241 cccgggcatt ggggctttcc agctctcaca gaaccttcag catccccagc ggccagtctt
      301 ggcatcttcg aagtaaggag agttttagat gcttctggat gttcaatgct agcaccttta
      361 cagactggag cagctcgatt ttcttcatat ttactttcaa gagcaagaaa agtgctgggc
      421 tcccacttat tttctccctg tggtgttccg gagttctgct ccatatccac cagaaagctg
      481 gcggcccaca gctttggcgc atccatggcg gcaatgatgt ccttccctcc ccagaggtat
      541 cactactttt tagtgctgga ctttgaggcc acgtgtgaca agccgcagat tcatcctcag
      601 gaaatcatcg agttccccat cctgaagcta aatggccgga ccatggagat tgagtctacc
      661 tttcacatgt atgtccagcc cgtagtccat ccacagctta ctcctttctg tacagagctc
      721 accgggatta ttcaagccat ggtggatggt cagccaagcc tgcagcaagt gctggagagg
      781 gtcgatgagt ggatggcgaa ggaaggcctc ttagatccaa acgtcaagtc aatttttgtc
      841 acctgtggag actgggactt aaaagtcata tgactgaacc ctttccagac tgcataggtt
      901 tcccttcttg ttgtttcaag tacaaacaaa catgatgtct ttgattgaaa aaaaaaaaaa
      961 agacactcgc tcatattacc ctactcactg cttgatttgg gggcatgcac tcaatgggga
     1021 ctactgaggg tcatgcagcc aagactgtgg aagagcagag actgctgtca cctggagtga
     1081 agtcccatgg cggtggaagc acccgcctgg ggagcactgt ggggcaggga ctgtctcgtg
     1141 gggcgtgtag atgaaggctg aaatgctgag ccggtgacct gcttgatggg ggtcagtctg
     1201 ggccctcttg gcatcattca gcaaagctga ccacttcatc cttcttgaag cactcttcat
     1261 ttctacttat gtctcctgtt tctctgactt ttccttcaca gtacttttgg cagattcttc
     1321 tttccttttt tcttaaattt ggtgtttctt aaatattggt atttcttcga cctctctcct
     1381 agctgtcttt tctttttatc cgacacactc acacttatca gagtgatcta ttccccagct
     1441 tcagttatcc tctgtatgct gtcttctcat ttttcctcca tctgagaagt gggaactgac
     1501 atggcagcag tgatcccact ggagaaaagg aatcggctcc atctgccatc tgaactccaa
     1561 gccttcatat ccagcccctg ttctctctct cacctagata tacaccgacc ccttaaagct
     1621 caggtgttac tttttcccaa caccttgtcc tccaccattc tcttaaataa tgattgactg
     1681 gtaccatcta cttagtagtt ctgtcagaaa cctgagaatc acccttggtt cctcccttta
     1741 gccataacaa attaattgcc aaatcctatt gatcctttgt cccagaggtt tctcagagtc
     1801 tttgccttct ttccaaaccc agtaccactg ccctagttca ggtcaccata ttcttcttgg
     1861 attcctacga aagtcttctt tctcactggt ctctctgact gtcttgcttc ttctgttcct
     1921 ttctcctaat tgtagcagat tacatcacac ctgcttagca gccttcaagg cttccccttg
     1981 ccctccaggc aaagtcacac tatttattgg agcgttcaag gctcttgttt atttctcttg
     2041 cctcatctct tgatgctctc tatgtattta gtccccaccc cagccagatg ctctaactgg
     2101 cctattccta aggatcccct cctaacgtct ttctccaggt gccttcctgt gtgttcttgg
     2161 agcacatgtg cttattgata catgaaagtg tgctgtagct gcctcaactt gcctgtctct
     2221 ttccctagat tgtgggcacc attac
//
LOCUS       XM_032654153            1252 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X8, mRNA.
ACCESSION   XM_032654153
VERSION     XM_032654153.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1252
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             114..740
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X6"
                     /protein_id="XP_032510044.1"
                     /db_xref="GeneID:116765048"
                     /translation="MLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRK
                     LAAHSFGASMAAMMSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
                     ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNV
                     KSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKMTARTSPTS"
     misc_feature    315..>722
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(327..338,342..344,474..476,612..626,636..638)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(327..338,342..344,474..476,612..626,636..638)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
ORIGIN      
        1 cagagtgcgc ggagcattgg ggctttccag ctctcacaga accttcagca tccccagcgg
       61 ccagtcttgg catcttcgaa gtaaggagag ttttagatgc ttctggatgt tcaatgctag
      121 cacctttaca gactggagca gctcgatttt cttcatattt actttcaaga gcaagaaaag
      181 tgctgggctc ccacttattt tctccctgtg gtgttccgga gttctgctcc atatccacca
      241 gaaagctggc ggcccacagc tttggcgcat ccatggcggc aatgatgtcc ttccctcccc
      301 agaggtatca ctacttttta gtgctggact ttgaggccac gtgtgacaag ccgcagattc
      361 atcctcagga aatcatcgag ttccccatcc tgaagctaaa tggccggacc atggagattg
      421 agtctacctt tcacatgtat gtccagcccg tagtccatcc acagcttact cctttctgta
      481 cagagctcac cgggattatt caagccatgg tggatggtca gccaagcctg cagcaagtgc
      541 tggagagggt cgatgagtgg atggcgaagg aaggcctctt agatccaaac gtcaagtcaa
      601 tttttgtcac ctgtggagac tgggacttaa aagtcatgct cccgggccag tgccagtact
      661 tgggcttgcc agtggcagat tacttcaagc agtggattaa tctgaaaaag atgactgcaa
      721 gaacatcgcc aacatcatga agacactcgc ataccgaggc ttcatcttca agcagacatc
      781 aaagccgttc tgactggccg aggatgggat ggggcaggac agggtagctg cttggcccag
      841 cccaaaaccc tcctctccct caccagaggg gcaaagggag agtggcacag ctctacgtcc
      901 agagtgtccc ccagcccgcc ctgtgggctt gtgtcctggg taaggcttgg ccacttggcc
      961 cctctggaac agacactttg tgccccctac cccctcccct caacctcagc ccagtatcag
     1021 gccctcccat tgtgggcctg ggctggggga cctcctcctc actgtctcct cccagtacag
     1081 gcttcttgct ggggccacca agcccccctg tgccccctcc catctgtagt gcatggtgtg
     1141 tggtgccccc agggctccag gacagatcag gccccacctt gtgtctaccc ccatccccgc
     1201 tgtgaacgtg ccactgaata aagtcgggga aacgaggccc tgtgtgtgtg tg
//
LOCUS       XM_032654162            1256 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X9, mRNA.
ACCESSION   XM_032654162
VERSION     XM_032654162.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1256
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1256
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116765048"
     CDS             193..813
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X7"
                     /protein_id="XP_032510053.1"
                     /db_xref="GeneID:116765048"
                     /translation="MAAMMSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNG
                     RTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGL
                     LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGL
                     LDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF"
     misc_feature    235..768
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(247..258,262..264,394..396,532..546,556..558,
                     718..720,733..735)
                     /gene="ERI3"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(247..258,262..264,394..396,532..546,556..558,
                     718..720,733..735)
                     /gene="ERI3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
     misc_feature    order(247..249,253..255,544..546,718..720,733..735)
                     /gene="ERI3"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99836"
ORIGIN      
        1 agagtgcgcg gagcattggg gctttccagc tctcacagaa ccttcagcat ccccagcggc
       61 cagtcttggc atcttcgaag taaggagaga gcaagaaaag tgctgggctc ccacttattt
      121 tctccctgtg gtgttccgga gttctgctcc atatccacca gaaagctggc ggcccacagc
      181 tttggcgcat ccatggcggc aatgatgtcc ttccctcccc agaggtatca ctacttttta
      241 gtgctggact ttgaggccac gtgtgacaag ccgcagattc atcctcagga aatcatcgag
      301 ttccccatcc tgaagctaaa tggccggacc atggagattg agtctacctt tcacatgtat
      361 gtccagcccg tagtccatcc acagcttact cctttctgta cagagctcac cgggattatt
      421 caagccatgg tggatggtca gccaagcctg cagcaagtgc tggagagggt cgatgagtgg
      481 atggcgaagg aaggcctctt agatccaaac gtcaagtcaa tttttgtcac ctgtggagac
      541 tgggacttaa aagtcatgct cccgggccag tgccagtact tgggcttgcc agtggcagat
      601 tacttcaagc agtggattaa tctgaaaaag gcttacagct tcgccatggg ctgctggccc
      661 aagaatggac ttctagacat gaacaagggc ctcagcctgc aacacatagg ccggccccac
      721 agcggcattg atgactgcaa gaacatcgcc aacatcatga agacactcgc ataccgaggc
      781 ttcatcttca agcagacatc aaagccgttc tgactggccg aggatgggat ggggcaggac
      841 agggtagctg cttggcccag cccaaaaccc tcctctccct caccagaggg gcaaagggag
      901 agtggcacag ctctacgtcc agagtgtccc ccagcccgcc ctgtgggctt gtgtcctggg
      961 taaggcttgg ccacttggcc cctctggaac agacactttg tgccccctac cccctcccct
     1021 caacctcagc ccagtatcag gccctcccat tgtgggcctg ggctggggga cctcctcctc
     1081 actgtctcct cccagtacag gcttcttgct ggggccacca agcccccctg tgccccctcc
     1141 catctgtagt gcatggtgtg tggtgccccc agggctccag gacagatcag gccccacctt
     1201 gtgtctaccc ccatccccgc tgtgaacgtg ccactgaata aagtcgggga aacgag
//
LOCUS       XM_032654170            3836 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X10, mRNA.
ACCESSION   XM_032654170
VERSION     XM_032654170.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3836
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3836
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             2911..3393
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X8"
                     /protein_id="XP_032510061.1"
                     /db_xref="GeneID:116765048"
                     /translation="MEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVL
                     ERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAY
                     SFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
                     "
     misc_feature    2911..3348
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
ORIGIN      
        1 aggtgagtcg gtgtgttgtg gactcgtggt gctggctgcc gctgttgagg cggccgggaa
       61 cgggcggtgg ggagcgggcg gagctggccc tgcctctgcc tggccggcgc cgcagtcggc
      121 gcgggccgcg cccgccgccg taaactgccc tgagcgcctg ctcaggccga gggagaagtc
      181 ggggcctgca cctggaggga gcctgccgcg ctggccccga ggagggggcg ttgccatggc
      241 gacagcctct cccgctgctg acggggggcg ggggcggccc tgggaaggag ggctggtctc
      301 ctggccccct gctcctcccc ttacaattcc ctggacttgg atgggcccga gttgggggca
      361 acaccccggg gtgggtgatg cggcgaggcc cccccagatt gggccctggt aatgcatgcg
      421 gggtgagggt cgcggcgcgc agtttgtgca gcctggggtg ctggcccatg tgctcaccct
      481 ggatgcatgg tctactgaga aacgtttagg cggagaagga gaggggcagg gctttgaaag
      541 acaggctggg tgaggtgatt aagcatgctg acttcctacc tgggattgct taggaggagg
      601 aagagagctt tgaccaaaga ggatagaaaa ctagcaagga gatggtagag agaacattcc
      661 ctttaccctc tccccaacac acacacagac acacaagctt agcagtttac ttgtttttgt
      721 aaatctgttg cggtggtcgt agttacggtg gaaggattga ataaggggcc taacttggct
      781 agctttctgt ttgcttttcc tgcaaatgct ccagcaacag gtgttttctt aaaacaaaaa
      841 ggcatgaact tggattgggg cttgattgcg agttcttgca aaatataact gctccttgtt
      901 gacttggaag atgctgaacg tggcttctca ttgggggttt ggattctgtc cttagggctg
      961 gactttgtaa actgatagta cccatcattc tctctgctat aggtctctgg ccacttctct
     1021 ggtattagtt cttgtcagac attttatcag tttccccggc gaagggcaaa ataccaggaa
     1081 tcccattggc taaagaccgt acactatttg aacgatagta ggttgtgatt ggctgaatga
     1141 tttttgattg tagagtttct accagaaatt ggcttcatca aattctgctt tattctgact
     1201 ttatcataca cagcatgcct tgttttggtg ggttcatgcc tggagcttaa gtatattata
     1261 cctgaatccc ctagcatttg aaagccaatt tataaacagg gacttggagt gtgactccac
     1321 taatgtgtgt gtctgtgatc ttggttagaa acccacttgg ctgcctttcg tggggggagt
     1381 tgggggaggt agctgccggg aagtgattga taaggtttcc tttatggatt ctgtggtgct
     1441 tcactggagc tcagagcact ttggcaactt aagcactcca aattaaaagc tcattaacaa
     1501 ttcctgccca aagatcctgt aaataatcgg ctagctaggt cacagagctt ggctgagagc
     1561 tctccttgca acttgaaatt tccaaataaa agtgctttta ttccctttca ttttgaaaag
     1621 tgttttcttt gcggtggggt aggttggcga gtggcatttt tccaggggat ctgagtagaa
     1681 taaagtgtta aatgtgtaga gtggtagaag gaatagattg gttccaaacc taggtgtttc
     1741 tttgtgcaag ggcgttgcta gcttacaagg gcacttcggc aacttctaat ccttttgaag
     1801 atctgatgag taaaaggtgc aagatttaag tgatctgaag agaaaccgga gtatgaatta
     1861 agtgataaat atgataggcg tccattgatg atttgatttg gggtttgatt accttgactt
     1921 ttttagaact tgaggcagac ctagatatat cctgcaagtg tttcctggtc tgtgtggcca
     1981 tttgcagtat ggcctgtggc tttgtggcaa ccagtgtttc ccccaatccc tgcttcagtg
     2041 cctgagttct gaatattgtc agcctttact aggatcccct ccttggctag actaggattc
     2101 gggattatcc agagagccac gacttcatgg ccatctctct cagtccaagc tcagatattg
     2161 taaatgttta gtatttccag gagataaacc tccttaggaa gaaaagtatg ccactagaga
     2221 agatgaaatt catcattgca aaaatatata ttgttgacca ttgaaaaaac gcagaggtta
     2281 gggtaaccga ctccccacac agttgaaaat ctgcttataa cttttgactc cccaaaaatg
     2341 taactactaa tagcgttgac cagaagcctt actgataaca taagcagttg attaacacat
     2401 attttgtatg ttatgtgtat atctacttat atttaatgca ttcacgacct cctaactttt
     2461 tcttaattct tttggtattt ctaggctatg tggtttatct gcgggctttt tcaaattgtc
     2521 acaaatctcc aaaaaaaatc tcccaatata tttatttatt gagaaacatc tgcacataag
     2581 aagtggacct gcgcagttca aatctgtgtt gttcaaaggt caactgtagt actagtagct
     2641 tctgaaagct ctgtactggc actgtgcttc cacatagata actgttatcc caaagtagtt
     2701 tgagtttagg agtttgaagt atggtgtgat ctttaagttg tttcaaacag tattgaaata
     2761 gagttgttgc agagatctgt atttatccac agcattgggg ctttccagct ctcacagaac
     2821 cttcagcatc cccagcggcc agtcttggca tcttcgaagt aaggagagga aatcatcgag
     2881 ttccccatcc tgaagctaaa tggccggacc atggagattg agtctacctt tcacatgtat
     2941 gtccagcccg tagtccatcc acagcttact cctttctgta cagagctcac cgggattatt
     3001 caagccatgg tggatggtca gccaagcctg cagcaagtgc tggagagggt cgatgagtgg
     3061 atggcgaagg aaggcctctt agatccaaac gtcaagtcaa tttttgtcac ctgtggagac
     3121 tgggacttaa aagtcatgct cccgggccag tgccagtact tgggcttgcc agtggcagat
     3181 tacttcaagc agtggattaa tctgaaaaag gcttacagct tcgccatggg ctgctggccc
     3241 aagaatggac ttctagacat gaacaagggc ctcagcctgc aacacatagg ccggccccac
     3301 agcggcattg atgactgcaa gaacatcgcc aacatcatga agacactcgc ataccgaggc
     3361 ttcatcttca agcagacatc aaagccgttc tgactggccg aggatgggat ggggcaggac
     3421 agggtagctg cttggcccag cccaaaaccc tcctctccct caccagaggg gcaaagggag
     3481 agtggcacag ctctacgtcc agagtgtccc ccagcccgcc ctgtgggctt gtgtcctggg
     3541 taaggcttgg ccacttggcc cctctggaac agacactttg tgccccctac cccctcccct
     3601 caacctcagc ccagtatcag gccctcccat tgtgggcctg ggctggggga cctcctcctc
     3661 actgtctcct cccagtacag gcttcttgct ggggccacca agcccccctg tgccccctcc
     3721 catctgtagt gcatggtgtg tggtgccccc agggctccag gacagatcag gccccacctt
     3781 gtgtctaccc ccatccccgc tgtgaacgtg ccactgaata aagtcgggga aacgag
//
LOCUS       XM_032654180            1080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X11, mRNA.
ACCESSION   XM_032654180
VERSION     XM_032654180.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1080
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765048"
     CDS             139..621
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X8"
                     /protein_id="XP_032510071.1"
                     /db_xref="GeneID:116765048"
                     /translation="MEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVL
                     ERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAY
                     SFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
                     "
     misc_feature    139..576
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
ORIGIN      
        1 cggggtcaga gtgcgcggag cattggggct ttccagctct cacagaacct tcagcatccc
       61 cagcggccag tcttggcatc ttcgaagtaa ggagaggaaa tcatcgagtt ccccatcctg
      121 aagctaaatg gccggaccat ggagattgag tctacctttc acatgtatgt ccagcccgta
      181 gtccatccac agcttactcc tttctgtaca gagctcaccg ggattattca agccatggtg
      241 gatggtcagc caagcctgca gcaagtgctg gagagggtcg atgagtggat ggcgaaggaa
      301 ggcctcttag atccaaacgt caagtcaatt tttgtcacct gtggagactg ggacttaaaa
      361 gtcatgctcc cgggccagtg ccagtacttg ggcttgccag tggcagatta cttcaagcag
      421 tggattaatc tgaaaaaggc ttacagcttc gccatgggct gctggcccaa gaatggactt
      481 ctagacatga acaagggcct cagcctgcaa cacataggcc ggccccacag cggcattgat
      541 gactgcaaga acatcgccaa catcatgaag acactcgcat accgaggctt catcttcaag
      601 cagacatcaa agccgttctg actggccgag gatgggatgg ggcaggacag ggtagctgct
      661 tggcccagcc caaaaccctc ctctccctca ccagaggggc aaagggagag tggcacagct
      721 ctacgtccag agtgtccccc agcccgccct gtgggcttgt gtcctgggta aggcttggcc
      781 acttggcccc tctggaacag acactttgtg ccccctaccc cctcccctca acctcagccc
      841 agtatcaggc cctcccattg tgggcctggg ctgggggacc tcctcctcac tgtctcctcc
      901 cagtacaggc ttcttgctgg ggccaccaag cccccctgtg ccccctccca tctgtagtgc
      961 atggtgtgtg gtgcccccag ggctccagga cagatcaggc cccaccttgt gtctaccccc
     1021 atccccgctg tgaacgtgcc actgaataaa gtcggggaaa cgaggccctg tgtgtgtgtg
//
LOCUS       XM_032654190             985 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ERI1 exoribonuclease family member 3
            (ERI3), transcript variant X12, mRNA.
ACCESSION   XM_032654190
VERSION     XM_032654190.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..985
                     /gene="ERI3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116765048"
     CDS             60..542
                     /gene="ERI3"
                     /codon_start=1
                     /product="ERI1 exoribonuclease 3 isoform X8"
                     /protein_id="XP_032510081.1"
                     /db_xref="GeneID:116765048"
                     /translation="MEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVL
                     ERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAY
                     SFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
                     "
     misc_feature    60..497
                     /gene="ERI3"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
ORIGIN      
        1 ggtcagagtg cgcggaggaa atcatcgagt tccccatcct gaagctaaat ggccggacca
       61 tggagattga gtctaccttt cacatgtatg tccagcccgt agtccatcca cagcttactc
      121 ctttctgtac agagctcacc gggattattc aagccatggt ggatggtcag ccaagcctgc
      181 agcaagtgct ggagagggtc gatgagtgga tggcgaagga aggcctctta gatccaaacg
      241 tcaagtcaat ttttgtcacc tgtggagact gggacttaaa agtcatgctc ccgggccagt
      301 gccagtactt gggcttgcca gtggcagatt acttcaagca gtggattaat ctgaaaaagg
      361 cttacagctt cgccatgggc tgctggccca agaatggact tctagacatg aacaagggcc
      421 tcagcctgca acacataggc cggccccaca gcggcattga tgactgcaag aacatcgcca
      481 acatcatgaa gacactcgca taccgaggct tcatcttcaa gcagacatca aagccgttct
      541 gactggccga ggatgggatg gggcaggaca gggtagctgc ttggcccagc ccaaaaccct
      601 cctctccctc accagagggg caaagggaga gtggcacagc tctacgtcca gagtgtcccc
      661 cagcccgccc tgtgggcttg tgtcctgggt aaggcttggc cacttggccc ctctggaaca
      721 gacactttgt gccccctacc ccctcccctc aacctcagcc cagtatcagg ccctcccatt
      781 gtgggcctgg gctgggggac ctcctcctca ctgtctcctc ccagtacagg cttcttgctg
      841 gggccaccaa gcccccctgt gccccctccc atctgtagtg catggtgtgt ggtgccccca
      901 gggctccagg acagatcagg ccccaccttg tgtctacccc catccccgct gtgaacgtgc
      961 cactgaataa agtcggggaa acgag
//
LOCUS       XM_032654200            3716 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus importin 13 (IPO13), transcript variant
            X1, mRNA.
ACCESSION   XM_032654200
VERSION     XM_032654200.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3716
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3716
                     /gene="IPO13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 13 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765071"
     CDS             749..3640
                     /gene="IPO13"
                     /codon_start=1
                     /product="importin-13 isoform X1"
                     /protein_id="XP_032510091.1"
                     /db_xref="GeneID:116765071"
                     /translation="MERREEQPGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKNL
                     AQKWLMQAQVSPQAWHFSWQLLQPNKVPEIQYFGASALHIKISRYWSDIPTDQYESLK
                     AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQ
                     GRCLALLELLTVLPEEFQTSRLPQYRKSLVRASLAVECGAVFPLLEQLLQQPSSPSCV
                     RQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYV
                     NTLLKLIPLVLGLQDQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFL
                     ALVNMIMFCTGIPGHFPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQ
                     LVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKL
                     GRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADT
                     VMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSISSVSTLKKICRECKYDLPPYA
                     ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL
                     AEEIPNPSNKLAIVHILGLLSNLFTTLDVSHHEDDHEGSELRKLPVPQGPNPVVVVLQ
                     QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ
                     ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLA
                     QALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVEPVGK
                     VVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSVWIKEALQSPGFP
                     SARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGTDYTADY"
     misc_feature    881..1075
                     /gene="IPO13"
                     /note="Importin-beta N-terminal domain; Region: IBN_N;
                     smart00913"
                     /db_xref="CDD:197981"
     misc_feature    1094..1537
                     /gene="IPO13"
                     /note="Exportin 1-like protein; Region: Xpo1; pfam08389"
                     /db_xref="CDD:462459"
     misc_feature    1952..2071
                     /gene="IPO13"
                     /note="Importin 13 repeat; Region: Importin_rep;
                     pfam18773"
                     /db_xref="CDD:436727"
     misc_feature    2498..2629
                     /gene="IPO13"
                     /note="Importin 13 repeat; Region: Importin_rep_2;
                     pfam18786"
                     /db_xref="CDD:408557"
     misc_feature    2639..2755
                     /gene="IPO13"
                     /note="Importin 13 repeat; Region: Importin_rep_2;
                     pfam18786"
                     /db_xref="CDD:408557"
     misc_feature    3224..3448
                     /gene="IPO13"
                     /note="Importin 13 repeat; Region: Importin_rep_3;
                     pfam18806"
                     /db_xref="CDD:465873"
ORIGIN      
        1 aggcgcgggt tggggggtac ggcctctgag tctgcggtgc cggggacagg cgctcggggc
       61 atcccgcccc tctctgaggt ccccgcccgg tcccggccgg gccagctcgc ctgtcagtca
      121 gtggggcgga ggcagcgacg gtagaggggc cggagccggg cacggagaag agcgcgggcc
      181 aggccgagcg gtggggacct gccccttaac tccacggact cttcgcccca gacttgcgaa
      241 gctgtacccc ctgcgcttcg ttggacgcct ccgtaacccg cgaagggctc tcttcccccg
      301 tagcctccca cccccgtgac ctcttcctag gacccgagag ctcactcaga agagggtgtt
      361 gtgggtacag gccatcgacc ctgtgacccc tcacgggcca gggccttggt ttccctcagg
      421 cctccctccc ctatgactcc ctcctcatag cttctgggga cagagccctg acctaccacc
      481 aggacccctg cctgcgaact cctcactgac ggcttcctcc taggagtccc cctcagtggg
      541 tctcctccta agagcatccc ttttggcctc tggcaagccc ccccgccaac cgaggtgggg
      601 aggcctcggc agccatgctc tccctgggcc ccctgtcacc ccaccatccc ctgggcaccg
      661 aagccggagt ctagcagggg gccagcagcc aagaggctgg ggcaggagac aggtcacggt
      721 ccacctccct gctggggagg gagcaaagat ggagcggcgg gaggagcagc cgggggctgc
      781 aggggctgga gcagcaccag ccttggactt cactgtggag aacgtggaga aggcgctgca
      841 ccagctctac tacgacccca acattgagaa caagaacctg gctcagaagt ggctgatgca
      901 ggcccaggtc tccccacagg cctggcactt cagctggcag ctcctgcagc ccaacaaggt
      961 gcctgagatc cagtactttg gggccagtgc cctgcacatc aagatctctc gctactggag
     1021 tgacatcccc actgaccagt atgagagtct aaaggcacag ctcttcacgc agatcacccg
     1081 ctttgccagt ggctccaaga ttgtgctgac tcggctgtgc gtggcgctgg cctcgctggc
     1141 tctcagcatg atgcctgatg cctggccctg tgctgtggca gatatggtgc ggctcttcca
     1201 ggctgaggac tccccagtgg acggccaggg ccgctgcctg gccctgctag agctgctgac
     1261 agtgctgccc gaggagttcc agaccagccg cctgccccag tatcgcaaaa gcctggtgcg
     1321 ggccagcctg gcagtggagt gcggggctgt cttcccgctg ctggagcagc tgctgcagca
     1381 gcccagctca cccagctgtg tgcgtcagaa ggtgctcaag tgcttttcca gctgggtgca
     1441 gctggaggtg cccctgcagg actgtgaggc gctcattcag gctgccttcg ctgctctgca
     1501 ggactcagag ctcttcgaca gcagcgtgga ggccatcgtc aatgccatct cacagcctga
     1561 tgcccagagg tatgtgaaca cactcctgaa actcatccca ctggtactgg gactgcagga
     1621 tcaactgcga caggcagtgc agaatgggga catggagacc tcccacggca tctgtcgcat
     1681 tgctgtggcc ctgggcgaga accactcccg ggccttgctg gaccaagtgg agcactggca
     1741 gagctttctg gcccttgtca acatgatcat gttctgcacg ggcatccctg gccacttccc
     1801 tgtcaatgag accaccagct ccctgaccct caccttctgg tacacgctgc aggatgacat
     1861 tctgtccttt gaggcagaga agcaggctgt gtaccagcag gtataccggc cggtctactt
     1921 ccagctggta gatgtgcttc tgcacaaggc ccagttccct tctgatgaag aatatggatt
     1981 ctggtcctca gatgagaagg agcagttccg aatttacagg gtggacatct cagatacact
     2041 catgtatgtc tatgagatgc tgggggccga gctgctcagc aacctctatg acaagctggg
     2101 ccgtttgctt accagctcag aggagcccta ctcctggcag cacacagagg ccctgctcta
     2161 tggcttccag tccatcgcgg agaccatcga tgtcaactat tctgatgtgg tgcccgggct
     2221 cattggcctc atcccacgga tcagcatcag caatgtgcag ctggcggaca ctgtcatgtt
     2281 caccattgga gctctgtctg aatggctggc tgaccacccc gtcatgatca acagcgttct
     2341 acccttagta ctgcatgccc taggcaatcc cgagctctct atctcttctg tgtccaccct
     2401 caagaagatc tgccgagaat gcaagtatga cctgccgccc tatgctgcca atatcgtggc
     2461 tgtctcccag gatgtgctga tgaaacagat ccataagacg agccagtgca tgtggctgat
     2521 gcaggcactg ggcttcctgc tgtcggccct gcaagtggag gagatcctta aaaacctgca
     2581 ctcgctcatc tcaccgtata tccagcagct ggagaagctg gcagaggaga tacctaatcc
     2641 ctccaacaag ctggccattg tccacatctt ggggcttctc tccaacctct tcaccacgct
     2701 ggacgtcagt catcatgaag atgatcatga aggctctgag ctccggaagc tgccagtgcc
     2761 gcagggaccc aaccctgtgg tggtggtact gcagcaggtc ttccagctta tccagaaggt
     2821 gctgagcaaa tggctgaatg atgcccaggt ggtggaggcg gtgtgcgcta tcttcgagaa
     2881 gtcagttaag acgctgctgg acgactttgc ccccatggtg ccacagctgt gtgagatgct
     2941 gggtcggatg tacagcacca tccctcaggc ctccgctctt gacctcactc gacagctggt
     3001 ccacatcttt gctcatgagc ctgcccactt tcccccaatc gaggccctct tcctgctcgt
     3061 cacctccgtc acactcaccc tcttccagca agggcccagg gatcatcctg atattgttga
     3121 ttcatttatg caactcctgg cacaggctct gaagcggaag ccagatttgt tcctgtgtga
     3181 acgattggat gtcaaagctg tgttccagtg tgctgtgctg gccctcaagt tccccgaagc
     3241 acctactgtc aaggcctcct gtggcttctt tacagagctg ctgcctcggt gtggggaagt
     3301 agaacctgtg ggaaaggtgg tacaggagga tggccgtatg ctgctcatag cagtgctgga
     3361 ggccattggg ggccaggcct cccgcagcct catggactgc tttgccgaca tcctatttgc
     3421 tctgaacaaa cactgcttca gcctcctgag cgtgtggatc aaggaggcac ttcagtcacc
     3481 tggttttccc tctgcccgcc tcagccctga acagaaggac accttcagcc aacagatcct
     3541 tcgcgagcga gtaaacaaga ggcgggtgaa ggagatggtg aaggagttca cactgctgtg
     3601 ccgggggcta catggcacag attacacagc tgactactga ggggcgcccc cgtcccaccc
     3661 acacctcctc ctcacccctt cctatcccca aagagtaaac ttgaaccttc actgca
//
LOCUS       XM_032654209            3580 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus importin 13 (IPO13), transcript variant
            X2, mRNA.
ACCESSION   XM_032654209
VERSION     XM_032654209.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3580
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3580
                     /gene="IPO13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116765071"
     CDS             757..3504
                     /gene="IPO13"
                     /codon_start=1
                     /product="importin-13 isoform X2"
                     /protein_id="XP_032510100.1"
                     /db_xref="GeneID:116765071"
                     /translation="MERREEQPGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKNL
                     AQKWLMQAQVSPQAWHFSWQLLQPNKVPEIQYFGASALHIKISRYWSDIPTDQYESLK
                     AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQ
                     GRCLALLELLTVLPEEFQTSRLPQYRKSLVRASLAVECGAVFPLLEQLLQQPSSPSCV
                     RQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYV
                     NTLLKLIPLVLGLQDQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFL
                     ALVNMIMFCTGIPGHFPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQ
                     LVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKL
                     GRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADT
                     VMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSISSVSTLKKICRECKYDLPPYA
                     ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL
                     AEEIVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM
                     LGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPD
                     IVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLP
                     RCGEVEPVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSVWI
                     KEALQSPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGTDYTAD
                     Y"
     misc_feature    814..>2841
                     /gene="IPO13"
                     /note="Importin beta-related nuclear transport receptor
                     [Nuclear structure / Intracellular trafficking and
                     secretion]; Region: CRM1; COG5101"
                     /db_xref="CDD:227432"
     misc_feature    889..1083
                     /gene="IPO13"
                     /note="Importin-beta N-terminal domain; Region: IBN_N;
                     smart00913"
                     /db_xref="CDD:197981"
     misc_feature    1102..1545
                     /gene="IPO13"
                     /note="Exportin 1-like protein; Region: Xpo1; pfam08389"
                     /db_xref="CDD:462459"
     misc_feature    1960..2079
                     /gene="IPO13"
                     /note="Importin 13 repeat; Region: Importin_rep;
                     pfam18773"
                     /db_xref="CDD:436727"
     misc_feature    2506..2637
                     /gene="IPO13"
                     /note="Importin 13 repeat; Region: Importin_rep_2;
                     pfam18786"
                     /db_xref="CDD:408557"
     misc_feature    3088..3312
                     /gene="IPO13"
                     /note="Importin 13 repeat; Region: Importin_rep_3;
                     pfam18806"
                     /db_xref="CDD:465873"
ORIGIN      
        1 gccagggcag gcgcgggttg gggggtacgg cctctgagtc tgcggtgccg gggacaggcg
       61 ctcggggcat cccgcccctc tctgaggtcc ccgcccggtc ccggccgggc cagctcgcct
      121 gtcagtcagt ggggcggagg cagcgacggt agaggggccg gagccgggca cggagaagag
      181 cgcgggccag gccgagcggt ggggacctgc cccttaactc cacggactct tcgccccaga
      241 cttgcgaagc tgtaccccct gcgcttcgtt ggacgcctcc gtaacccgcg aagggctctc
      301 ttcccccgta gcctcccacc cccgtgacct cttcctagga cccgagagct cactcagaag
      361 agggtgttgt gggtacaggc catcgaccct gtgacccctc acgggccagg gccttggttt
      421 ccctcaggcc tccctcccct atgactccct cctcatagct tctggggaca gagccctgac
      481 ctaccaccag gacccctgcc tgcgaactcc tcactgacgg cttcctccta ggagtccccc
      541 tcagtgggtc tcctcctaag agcatccctt ttggcctctg gcaagccccc ccgccaaccg
      601 aggtggggag gcctcggcag ccatgctctc cctgggcccc ctgtcacccc accatcccct
      661 gggcaccgaa gccggagtct agcagggggc cagcagccaa gaggctgggg caggagacag
      721 gtcacggtcc acctccctgc tggggaggga gcaaagatgg agcggcggga ggagcagccg
      781 ggggctgcag gggctggagc agcaccagcc ttggacttca ctgtggagaa cgtggagaag
      841 gcgctgcacc agctctacta cgaccccaac attgagaaca agaacctggc tcagaagtgg
      901 ctgatgcagg cccaggtctc cccacaggcc tggcacttca gctggcagct cctgcagccc
      961 aacaaggtgc ctgagatcca gtactttggg gccagtgccc tgcacatcaa gatctctcgc
     1021 tactggagtg acatccccac tgaccagtat gagagtctaa aggcacagct cttcacgcag
     1081 atcacccgct ttgccagtgg ctccaagatt gtgctgactc ggctgtgcgt ggcgctggcc
     1141 tcgctggctc tcagcatgat gcctgatgcc tggccctgtg ctgtggcaga tatggtgcgg
     1201 ctcttccagg ctgaggactc cccagtggac ggccagggcc gctgcctggc cctgctagag
     1261 ctgctgacag tgctgcccga ggagttccag accagccgcc tgccccagta tcgcaaaagc
     1321 ctggtgcggg ccagcctggc agtggagtgc ggggctgtct tcccgctgct ggagcagctg
     1381 ctgcagcagc ccagctcacc cagctgtgtg cgtcagaagg tgctcaagtg cttttccagc
     1441 tgggtgcagc tggaggtgcc cctgcaggac tgtgaggcgc tcattcaggc tgccttcgct
     1501 gctctgcagg actcagagct cttcgacagc agcgtggagg ccatcgtcaa tgccatctca
     1561 cagcctgatg cccagaggta tgtgaacaca ctcctgaaac tcatcccact ggtactggga
     1621 ctgcaggatc aactgcgaca ggcagtgcag aatggggaca tggagacctc ccacggcatc
     1681 tgtcgcattg ctgtggccct gggcgagaac cactcccggg ccttgctgga ccaagtggag
     1741 cactggcaga gctttctggc ccttgtcaac atgatcatgt tctgcacggg catccctggc
     1801 cacttccctg tcaatgagac caccagctcc ctgaccctca ccttctggta cacgctgcag
     1861 gatgacattc tgtcctttga ggcagagaag caggctgtgt accagcaggt ataccggccg
     1921 gtctacttcc agctggtaga tgtgcttctg cacaaggccc agttcccttc tgatgaagaa
     1981 tatggattct ggtcctcaga tgagaaggag cagttccgaa tttacagggt ggacatctca
     2041 gatacactca tgtatgtcta tgagatgctg ggggccgagc tgctcagcaa cctctatgac
     2101 aagctgggcc gtttgcttac cagctcagag gagccctact cctggcagca cacagaggcc
     2161 ctgctctatg gcttccagtc catcgcggag accatcgatg tcaactattc tgatgtggtg
     2221 cccgggctca ttggcctcat cccacggatc agcatcagca atgtgcagct ggcggacact
     2281 gtcatgttca ccattggagc tctgtctgaa tggctggctg accaccccgt catgatcaac
     2341 agcgttctac ccttagtact gcatgcccta ggcaatcccg agctctctat ctcttctgtg
     2401 tccaccctca agaagatctg ccgagaatgc aagtatgacc tgccgcccta tgctgccaat
     2461 atcgtggctg tctcccagga tgtgctgatg aaacagatcc ataagacgag ccagtgcatg
     2521 tggctgatgc aggcactggg cttcctgctg tcggccctgc aagtggagga gatccttaaa
     2581 aacctgcact cgctcatctc accgtatatc cagcagctgg agaagctggc agaggagata
     2641 gtggtggtgg tactgcagca ggtcttccag cttatccaga aggtgctgag caaatggctg
     2701 aatgatgccc aggtggtgga ggcggtgtgc gctatcttcg agaagtcagt taagacgctg
     2761 ctggacgact ttgcccccat ggtgccacag ctgtgtgaga tgctgggtcg gatgtacagc
     2821 accatccctc aggcctccgc tcttgacctc actcgacagc tggtccacat ctttgctcat
     2881 gagcctgccc actttccccc aatcgaggcc ctcttcctgc tcgtcacctc cgtcacactc
     2941 accctcttcc agcaagggcc cagggatcat cctgatattg ttgattcatt tatgcaactc
     3001 ctggcacagg ctctgaagcg gaagccagat ttgttcctgt gtgaacgatt ggatgtcaaa
     3061 gctgtgttcc agtgtgctgt gctggccctc aagttccccg aagcacctac tgtcaaggcc
     3121 tcctgtggct tctttacaga gctgctgcct cggtgtgggg aagtagaacc tgtgggaaag
     3181 gtggtacagg aggatggccg tatgctgctc atagcagtgc tggaggccat tgggggccag
     3241 gcctcccgca gcctcatgga ctgctttgcc gacatcctat ttgctctgaa caaacactgc
     3301 ttcagcctcc tgagcgtgtg gatcaaggag gcacttcagt cacctggttt tccctctgcc
     3361 cgcctcagcc ctgaacagaa ggacaccttc agccaacaga tccttcgcga gcgagtaaac
     3421 aagaggcggg tgaaggagat ggtgaaggag ttcacactgc tgtgccgggg gctacatggc
     3481 acagattaca cagctgacta ctgaggggcg cccccgtccc acccacacct cctcctcacc
     3541 ccttcctatc cccaaagagt aaacttgaac cttcactgca
//
LOCUS       XM_032654223            1446 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus forkhead box D3 (FOXD3), mRNA.
ACCESSION   XM_032654223
VERSION     XM_032654223.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1446
                     /gene="FOXD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 Proteins"
                     /db_xref="GeneID:116765077"
     CDS             1..1446
                     /gene="FOXD3"
                     /codon_start=1
                     /product="forkhead box protein D3"
                     /protein_id="XP_032510114.1"
                     /db_xref="GeneID:116765077"
                     /translation="MTLSGGGSASDMSGQTVLTAEDVDIDVVGEGDDGLEEKDSDAGC
                     DSPAGPPELRLDEADEVTLAAPHHGQPQPPHQQPLALPKEATGAGAGPGGEAGASEAD
                     GCKGGVGGEESGGSGGGPGSGSGAAGGLAPNKPKNSLVKPPYSYIALITMAILQSPQK
                     KLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD
                     PQSEDMFDNGSFLRRRKRFKRHQQEHLREQTALMMQSFGAYSLAAAAGAAGPYGRPYG
                     LHPAAAAGAYSHPAAAACAAAAAALQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFG
                     SQLGPGLQLQLNSLGAAAAAAGTAGAAGTTASLIKSEPSARPSFSIENIIGGGPAAPG
                     GSAAGAGGAGVTGGTGGSGGGGAAQSFLRPPGTVQSAALIATHQPLSLSRTTATIAPI
                     LSVPLSGQFLQPAASAAAAAAAAAQAKWPAQ"
     misc_feature    418..708
                     /gene="FOXD3"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     D3 (FOXD3) and similar proteins; Region: FH_FOXD3;
                     cd20047"
                     /db_xref="CDD:410821"
     misc_feature    order(424..441,490..495,547..552,556..564,568..576,
                     583..585,601..618,622..624,628..645,694..708)
                     /gene="FOXD3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410821"
ORIGIN      
        1 atgaccctct ccggcggcgg cagcgccagc gacatgtccg gccagacggt gctgacggcc
       61 gaggacgtgg acatcgatgt ggtgggcgag ggcgatgacg ggctggagga gaaggacagc
      121 gacgcgggct gcgatagccc cgcggggccg cccgagctgc gcctggacga ggcggacgag
      181 gtgacgctgg cggcccccca ccatgggcag cctcagccgc cgcaccagca gcccctggca
      241 ctgcccaagg aggccactgg agccggggcc gggccagggg gcgaggcggg cgcgtccgag
      301 gccgacggct gcaagggcgg cgttggcggc gaggagagcg gcgggagcgg tggcgggcct
      361 ggctcgggca gcggtgcggc gggaggcctg gcaccgaaca agcccaagaa cagcctggtg
      421 aagccgccct actcgtacat cgcgctcatc actatggcta tcctgcagag cccgcagaag
      481 aagctgaccc tgagtggcat ctgcgagttc atcagcaacc gcttccccta ctaccgggag
      541 aagttccccg cctggcagaa cagcatccgc cacaatctct cgctcaacga ctgcttcgtc
      601 aagatccccc gtgaaccggg caacccgggg aagggcaact actggaccct ggacccgcag
      661 tccgaggaca tgttcgacaa cggcagcttc ctgcggcgcc ggaaacgctt caagcgccac
      721 cagcaggagc acctgcgtga gcagacggcg ctcatgatgc agagcttcgg cgcctacagc
      781 ctggcggcgg cggccggcgc cgcggggccc tacggccgcc cctacggcct gcaccctgcg
      841 gccgcggccg gcgcctactc gcaccctgct gctgcggcat gcgcggcggc ggccgcggcg
      901 ctccagtacc cgtacgctct gccgccggtg gcacccgtgc tgccgcccgc cgtgccgctg
      961 ctgccctcgg gcgagttggg ccgcaaagcg gccgcgttcg gctcgcagct cggcccgggc
     1021 ctgcagctgc agctcaacag tttgggcgct gccgcggccg ccgcgggcac ggcgggcgcc
     1081 gctggcacca cggcgtcgct cattaagtcc gagccgagtg cgcgaccgtc gttcagcatc
     1141 gagaacatca tcggtggggg gcccgcggcg cccgggggct cggcggcggg cgctgggggc
     1201 gccggggtaa ctgggggcac cgggggtagc gggggcggcg gggcggcgca gtcctttctg
     1261 cggccgcccg ggaccgtgca gtcagcagcg ctcatagcca cgcaccagcc tctctcgctg
     1321 agtcggacga cggcgaccat cgcgcccatc ctgagcgtgc cgctctctgg acagtttctg
     1381 cagcctgcag cctcggccgc cgccgctgcc gccgccgcag cgcaggccaa gtggcccgct
     1441 caatag
//
LOCUS       XR_004353133             697 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116765079
            (LOC116765079), ncRNA.
ACCESSION   XR_004353133
VERSION     XR_004353133.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..697
                     /gene="LOC116765079"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116765079"
     ncRNA           1..697
                     /ncRNA_class="lncRNA"
                     /gene="LOC116765079"
                     /product="uncharacterized LOC116765079"
                     /db_xref="GeneID:116765079"
ORIGIN      
        1 actccgcttc cccttgggtg gggcagcaaa ccccaataaa aagggcctct gctgcacgac
       61 agctatcctc ctgctactcg agttccgatt gactttggag aacctgatat aaagattcca
      121 gaaagatgtc ttctcaagag cagcagtgca agcagcagtg caagatacct ccagtgtgcc
      181 caacacagtg ccctgatcct tgctcaccta aaaagggtac agacccttgc ccacctataa
      241 agtgcactga gaaatgcact cctgtgccac ctccccagca atgccagcag aagtgcccac
      301 ccaaggacaa gtaacagctt caggttttat ctgcctctgg aaaggataag cacaatcagc
      361 tcatctagtt ccacagctcc accttcatct tctcttcaaa gcctatcatg gatacagaag
      421 aagctttcca cccttcagcc tgcagtgtgc gttggggatt cctgacggac agaggtttcc
      481 tatctgagtc tgctatgctg attccctctg ggaggtgtcc gaaaaagcat cccagagcct
      541 cagagggaag ggcagtatct ctcctcttga gtgtcctctg aggattctct cagagtcttc
      601 tgtgtgtatc tgtcacatgg gcagtggttt ctgccagatg agcagttgtt acttatcctc
      661 catttcctga ataaaataca attttttttg gggatgg
//
LOCUS       XM_032654260            4076 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus intracisternal A particle-promoted
            polypeptide (IPP), transcript variant X1, mRNA.
ACCESSION   XM_032654260
VERSION     XM_032654260.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4076
                     /gene="IPP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765087"
     CDS             547..2301
                     /gene="IPP"
                     /codon_start=1
                     /product="actin-binding protein IPP isoform X1"
                     /protein_id="XP_032510151.1"
                     /db_xref="GeneID:116765087"
                     /translation="MANEGCAKAGDSPFSSDKHAQLILAQINKMRNGQHFCDVQLQVG
                     KETFKVHRLVLAASSPYFAALFAGGMKESSKDVVQILGIEAGIFQILLDFIYTGIVNI
                     GVNNVQELIVAADMLQLTEVVNLCCEFLKGQIDPLNCIGIFQFSEQIACHDLLEFTEN
                     YIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKH
                     VVEVLDPIRFPLLPPQRLLKYIEGISDFNLRVALQTLLKEYCEVCKSPKENKFSSFLQ
                     TSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARC
                     GLGVAVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAI
                     YALGGWVGAEIGNTIERFDPDENKWEVVGNMAMSRYYFGCCEMQGLIYVIGGISNEGI
                     ELCSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSIGGWNETQDALHTVEKYSF
                     EEEKWVEVASMKVPRAGMCAVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTW
                     TEIGNMITSRCEGGVAVL"
     misc_feature    595..969
                     /gene="IPP"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in intracisternal
                     A particle-promoted polypeptide (IPP); Region:
                     BTB_POZ_KLHL27_IPP; cd18256"
                     /db_xref="CDD:349565"
     misc_feature    634..2271
                     /gene="IPP"
                     /note="kelch-like protein; Provisional; Region: PHA03098"
                     /db_xref="CDD:222983"
     misc_feature    1543..1674
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1684..1818
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1825..1965
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1969..2106
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    2113..2268
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 ggtgcaaact gcaagccgtt tagccagcca gttgttgact tcctggggag cagcgtcata
       61 ggctgcgtga ggagaggaga tcccgactct ttcattagca ctgaggctcg ctggttgcct
      121 gagacgccac aagaatcgag agagggtagg cggcgtggaa acggcaagcc ggccagcccc
      181 agaaggcggg agcttaagct ggccaaaggc cattgccctc cgggaatcaa gcacgagccc
      241 agcggcgcag cagccggcac cgagagccgc cgctctacgt gaacgaaaga gcagagcgca
      301 cgcgcaaacc cgccctgcca tcggagcgaa gaggccccct cagccggccg gacctcgcct
      361 caagccctca acgatctgca ctgcccattc acccgcgcct tgtcaccccg ccgggctttc
      421 cccgccccgt ctgtgcgcta gcttatcgcg gctgcgcact cagagcctga gcgggcgcca
      481 gcgggaaggg gaagcggcgg ggaccagatt atgggcaaca gtccttttaa ttaatgtgtc
      541 atcatcatgg ctaatgaggg ctgtgccaag gctggtgata gtcctttttc atcagataaa
      601 catgctcaac tcatcttggc ccagatcaat aaaatgagaa atggacagca tttctgtgat
      661 gtgcagctgc aagttggaaa ggaaactttc aaagttcatc ggctggtttt ggctgccagt
      721 agtccttact ttgcagcttt gttcgctgga ggaatgaaag agtcctcaaa agatgttgta
      781 cagattctag gaattgaagc tggaatcttt caaatacttc tagatttcat ttacacaggt
      841 atagtgaaca taggagtgaa taatgtccaa gagctgattg ttgcagcaga catgctacag
      901 ttgactgaag ttgttaatct ttgctgtgaa tttctgaaag gacaaattga tccactgaac
      961 tgcattggga tctttcagtt ctctgagcag attgcctgcc atgatctttt ggaatttaca
     1021 gaaaactaca ttcatgtcca ttttttggag gttcatagtg gggaagagtt cctggcactt
     1081 acaaaagatc agttgatcaa aattttgcga agtgaagagc ttagcatcga ggatgaatac
     1141 caggtcttct tagctgcaat gcagtggatt ctgaaagatc tcggaaagag aagaaaacat
     1201 gtggtggaag tgctagaccc aattcgattc cctttattac ctcctcagag gcttttaaag
     1261 tatatagaag gaatatccga ttttaatctt cgtgttgcat tgcaaacact tttgaaagag
     1321 tactgtgagg tgtgcaaatc tcccaaagag aacaaatttt ctagttttct gcagacatct
     1381 aaggttcgac ctcggaagaa agcaagaaag tacctgtatg cagtaggtgg atatactcgg
     1441 ttgcaggggg gtcgttggag tgatagtaga gccctcagtt gtgtagaacg ttttgacacc
     1501 tttagccagt actggaccac tgtgtcttca cttcatcagg ctcgatgtgg actgggagta
     1561 gcagttctgg gagggatggt ctacgcaatt ggaggtgaaa aggattcaat gatttttgac
     1621 tgtactgaat gctatgatcc agttactaaa cagtggacaa ctgtagcttc aatgaatcac
     1681 ccccgctgtg gcttgggagt gtgtgtgtgt tatggggcta tctatgcttt gggtggttgg
     1741 gttggagctg agatagggaa caccattgaa cgatttgatc ccgatgaaaa taaatgggaa
     1801 gtagttggca acatggctat gtcacgctac tactttgggt gttgtgaaat gcaaggttta
     1861 atttatgtga ttgggggcat cagcaatgaa ggaatagagc tttgttcttt tgaagtttat
     1921 gatccacttt ccaagcgttg gtctccactt cctccaatgg gaaccagaag agcatatctt
     1981 ggggtggctg cactcaatga ctgcatctat tctattggag ggtggaatga gacacaagat
     2041 gctcttcaca ctgtagaaaa atattccttt gaagaggaaa agtgggttga agttgcttca
     2101 atgaaagtgc ctagagcagg catgtgtgct gtggcagtca atgggcttct gtatgtttct
     2161 ggaggtcgat cttccagtca tgatttcttg gccccaggta ccttggactc agttgaagtt
     2221 tataaccctc attcagatac atggacagaa attggtaaca tgatcaccag tcgttgtgaa
     2281 ggaggtgttg ctgtactatg aaatagtaag cataagagag cacaggaaac attttgaaaa
     2341 tacagggtct caccttttgc aaatcacact tgtgtttggt gataggaccc tttcatctgt
     2401 tgagttttct gtgaatttgg tagataaatg agtaaaaaat gatttttttt aaagaatttg
     2461 agtgagaagc gatatggaat atatcctaaa tcaataaaga gttcacacaa atttgccaag
     2521 cttaccagta gatatgctgt ttatgctcta gaattgtcca attaggagta gagtcctatt
     2581 tgtaaaaatg atttgctaga agcttcttgg caaatagtcc ctttagctgt ttctccagtg
     2641 cagttaagct gtaacatgac cattgtgtca tttaagaata tcaatgagac agtttaaaga
     2701 tatctataca ttcatgattc aatccagagt gcaattttcc atggtcatag tttaccctac
     2761 aaagaaaagc caatgaagca acttcctact tttattttat tccaggagtt ttcactagtc
     2821 ccaaactttt tattaacagc aggaaaactg ggagggacat gtgggaaata tctagctatt
     2881 tatatatata agttttcacc tgttgataac agcatataaa aagcttttgc tcacttatgg
     2941 ttttgtcttg atgctggaat gcagatgagg aattaatagg aggttcttag tgacagtcct
     3001 ttattgcaat aggatgatgt aatgggtgat agagcccagc aggttgaatg cacctttttc
     3061 taaatagtta ccaaaaatac gtttagcttt gggaagaggg aatttattag attatcaagc
     3121 ttggtaaagc atactcacac ttgggcaagc ctaaatatga gtttagtaca aagctgctcc
     3181 ctggcttgga gaagatggaa ttgtaggtac ttgtaaaact ttttacagat actaactcat
     3241 aagtgtacgc tgaaaggcct ctgacccaaa actgcttctc aaaacttctc attttccctg
     3301 agaagcattc taaagaattg ttttctgtcc atttctgaga tgaagattct ttgtgtacat
     3361 gatcatcact tttaaattat ttctactagt cagttggagc catatatatt aaaggtctta
     3421 tacatttagg tttacctggc tgttccagga tttgatttgt atatccctga tttccccttt
     3481 tctgtacaat cctccagtat attataggca tcagtggctt atttagatag aaaacctttg
     3541 gtaagcatta aagactcagg cagcactcat atccaaaata tttggataga ctcacaaaga
     3601 tactttcctt cataacttaa ccatatgcat atattaagaa aagcttacgt agtgcagaca
     3661 gaaagctctg tatcccattc tttggggtac cctgaaagtc tgaagagtca cagatgcctg
     3721 gctgggatct gtaaaatgtc aaggaatgaa gtatcaagat aatttgtaaa ctatttgagt
     3781 tgtaactcat gtgcctttaa tatttctagt taaagagaat ctgcattctg gttcaagaga
     3841 tttacaaatt ttcctatcat ttaattttca ttattgcctg atgccaacct aaaatggcac
     3901 tatgaaggga ggcattttgt actgctgtgg cagaaatgta gtcaacacaa tcagtgtttg
     3961 ggcctaatag gtccagacaa tgcctgaaaa taagtaatta taaatatgct tatttcctag
     4021 gtaatgacag attgttttaa aaagaatgta ctaataaagt atcttgattt ctttgc
//
LOCUS       XM_032654268            3852 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus intracisternal A particle-promoted
            polypeptide (IPP), transcript variant X2, mRNA.
ACCESSION   XM_032654268
VERSION     XM_032654268.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3852
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3852
                     /gene="IPP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765087"
     CDS             323..2077
                     /gene="IPP"
                     /codon_start=1
                     /product="actin-binding protein IPP isoform X1"
                     /protein_id="XP_032510159.1"
                     /db_xref="GeneID:116765087"
                     /translation="MANEGCAKAGDSPFSSDKHAQLILAQINKMRNGQHFCDVQLQVG
                     KETFKVHRLVLAASSPYFAALFAGGMKESSKDVVQILGIEAGIFQILLDFIYTGIVNI
                     GVNNVQELIVAADMLQLTEVVNLCCEFLKGQIDPLNCIGIFQFSEQIACHDLLEFTEN
                     YIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKH
                     VVEVLDPIRFPLLPPQRLLKYIEGISDFNLRVALQTLLKEYCEVCKSPKENKFSSFLQ
                     TSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARC
                     GLGVAVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAI
                     YALGGWVGAEIGNTIERFDPDENKWEVVGNMAMSRYYFGCCEMQGLIYVIGGISNEGI
                     ELCSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSIGGWNETQDALHTVEKYSF
                     EEEKWVEVASMKVPRAGMCAVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTW
                     TEIGNMITSRCEGGVAVL"
     misc_feature    371..745
                     /gene="IPP"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in intracisternal
                     A particle-promoted polypeptide (IPP); Region:
                     BTB_POZ_KLHL27_IPP; cd18256"
                     /db_xref="CDD:349565"
     misc_feature    410..2047
                     /gene="IPP"
                     /note="kelch-like protein; Provisional; Region: PHA03098"
                     /db_xref="CDD:222983"
     misc_feature    1319..1450
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1460..1594
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1601..1741
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1745..1882
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1889..2044
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 tgtcccgggg gcgcctttga cgggattggg aattttctcc tcggctgtct ccggctctcg
       61 ggatccttga ggaggagagt gcgaggagcc tcaggaaccg gcttcctcct gccgttcagg
      121 cgtgcctcta ataatcgaag tgttttcgcc cggaacgtcg tctagtccgg tcccttcctg
      181 ccgctcttct ccccgccccc actggggaat ccgaggccga gttccggccc gtctgttgtc
      241 accagaagta tttgaggtgt cttccccgcc gtttagggac cagattatgg gcaacagtcc
      301 ttttaattaa tgtgtcatca tcatggctaa tgagggctgt gccaaggctg gtgatagtcc
      361 tttttcatca gataaacatg ctcaactcat cttggcccag atcaataaaa tgagaaatgg
      421 acagcatttc tgtgatgtgc agctgcaagt tggaaaggaa actttcaaag ttcatcggct
      481 ggttttggct gccagtagtc cttactttgc agctttgttc gctggaggaa tgaaagagtc
      541 ctcaaaagat gttgtacaga ttctaggaat tgaagctgga atctttcaaa tacttctaga
      601 tttcatttac acaggtatag tgaacatagg agtgaataat gtccaagagc tgattgttgc
      661 agcagacatg ctacagttga ctgaagttgt taatctttgc tgtgaatttc tgaaaggaca
      721 aattgatcca ctgaactgca ttgggatctt tcagttctct gagcagattg cctgccatga
      781 tcttttggaa tttacagaaa actacattca tgtccatttt ttggaggttc atagtgggga
      841 agagttcctg gcacttacaa aagatcagtt gatcaaaatt ttgcgaagtg aagagcttag
      901 catcgaggat gaataccagg tcttcttagc tgcaatgcag tggattctga aagatctcgg
      961 aaagagaaga aaacatgtgg tggaagtgct agacccaatt cgattccctt tattacctcc
     1021 tcagaggctt ttaaagtata tagaaggaat atccgatttt aatcttcgtg ttgcattgca
     1081 aacacttttg aaagagtact gtgaggtgtg caaatctccc aaagagaaca aattttctag
     1141 ttttctgcag acatctaagg ttcgacctcg gaagaaagca agaaagtacc tgtatgcagt
     1201 aggtggatat actcggttgc aggggggtcg ttggagtgat agtagagccc tcagttgtgt
     1261 agaacgtttt gacaccttta gccagtactg gaccactgtg tcttcacttc atcaggctcg
     1321 atgtggactg ggagtagcag ttctgggagg gatggtctac gcaattggag gtgaaaagga
     1381 ttcaatgatt tttgactgta ctgaatgcta tgatccagtt actaaacagt ggacaactgt
     1441 agcttcaatg aatcaccccc gctgtggctt gggagtgtgt gtgtgttatg gggctatcta
     1501 tgctttgggt ggttgggttg gagctgagat agggaacacc attgaacgat ttgatcccga
     1561 tgaaaataaa tgggaagtag ttggcaacat ggctatgtca cgctactact ttgggtgttg
     1621 tgaaatgcaa ggtttaattt atgtgattgg gggcatcagc aatgaaggaa tagagctttg
     1681 ttcttttgaa gtttatgatc cactttccaa gcgttggtct ccacttcctc caatgggaac
     1741 cagaagagca tatcttgggg tggctgcact caatgactgc atctattcta ttggagggtg
     1801 gaatgagaca caagatgctc ttcacactgt agaaaaatat tcctttgaag aggaaaagtg
     1861 ggttgaagtt gcttcaatga aagtgcctag agcaggcatg tgtgctgtgg cagtcaatgg
     1921 gcttctgtat gtttctggag gtcgatcttc cagtcatgat ttcttggccc caggtacctt
     1981 ggactcagtt gaagtttata accctcattc agatacatgg acagaaattg gtaacatgat
     2041 caccagtcgt tgtgaaggag gtgttgctgt actatgaaat agtaagcata agagagcaca
     2101 ggaaacattt tgaaaataca gggtctcacc ttttgcaaat cacacttgtg tttggtgata
     2161 ggaccctttc atctgttgag ttttctgtga atttggtaga taaatgagta aaaaatgatt
     2221 ttttttaaag aatttgagtg agaagcgata tggaatatat cctaaatcaa taaagagttc
     2281 acacaaattt gccaagctta ccagtagata tgctgtttat gctctagaat tgtccaatta
     2341 ggagtagagt cctatttgta aaaatgattt gctagaagct tcttggcaaa tagtcccttt
     2401 agctgtttct ccagtgcagt taagctgtaa catgaccatt gtgtcattta agaatatcaa
     2461 tgagacagtt taaagatatc tatacattca tgattcaatc cagagtgcaa ttttccatgg
     2521 tcatagttta ccctacaaag aaaagccaat gaagcaactt cctactttta ttttattcca
     2581 ggagttttca ctagtcccaa actttttatt aacagcagga aaactgggag ggacatgtgg
     2641 gaaatatcta gctatttata tatataagtt ttcacctgtt gataacagca tataaaaagc
     2701 ttttgctcac ttatggtttt gtcttgatgc tggaatgcag atgaggaatt aataggaggt
     2761 tcttagtgac agtcctttat tgcaatagga tgatgtaatg ggtgatagag cccagcaggt
     2821 tgaatgcacc tttttctaaa tagttaccaa aaatacgttt agctttggga agagggaatt
     2881 tattagatta tcaagcttgg taaagcatac tcacacttgg gcaagcctaa atatgagttt
     2941 agtacaaagc tgctccctgg cttggagaag atggaattgt aggtacttgt aaaacttttt
     3001 acagatacta actcataagt gtacgctgaa aggcctctga cccaaaactg cttctcaaaa
     3061 cttctcattt tccctgagaa gcattctaaa gaattgtttt ctgtccattt ctgagatgaa
     3121 gattctttgt gtacatgatc atcactttta aattatttct actagtcagt tggagccata
     3181 tatattaaag gtcttataca tttaggttta cctggctgtt ccaggatttg atttgtatat
     3241 ccctgatttc cccttttctg tacaatcctc cagtatatta taggcatcag tggcttattt
     3301 agatagaaaa cctttggtaa gcattaaaga ctcaggcagc actcatatcc aaaatatttg
     3361 gatagactca caaagatact ttccttcata acttaaccat atgcatatat taagaaaagc
     3421 ttacgtagtg cagacagaaa gctctgtatc ccattctttg gggtaccctg aaagtctgaa
     3481 gagtcacaga tgcctggctg ggatctgtaa aatgtcaagg aatgaagtat caagataatt
     3541 tgtaaactat ttgagttgta actcatgtgc ctttaatatt tctagttaaa gagaatctgc
     3601 attctggttc aagagattta caaattttcc tatcatttaa ttttcattat tgcctgatgc
     3661 caacctaaaa tggcactatg aagggaggca ttttgtactg ctgtggcaga aatgtagtca
     3721 acacaatcag tgtttgggcc taataggtcc agacaatgcc tgaaaataag taattataaa
     3781 tatgcttatt tcctaggtaa tgacagattg ttttaaaaag aatgtactaa taaagtatct
     3841 tgatttcttt gc
//
LOCUS       XM_032654276            3756 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus intracisternal A particle-promoted
            polypeptide (IPP), transcript variant X3, mRNA.
ACCESSION   XM_032654276
VERSION     XM_032654276.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3756
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3756
                     /gene="IPP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116765087"
     CDS             551..1981
                     /gene="IPP"
                     /codon_start=1
                     /product="actin-binding protein IPP isoform X2"
                     /protein_id="XP_032510167.1"
                     /db_xref="GeneID:116765087"
                     /translation="MANEGCAKAGDSPFSSDKHAQLILAQINKMRNGQHFCDVQLQVG
                     KETFKVHRLVLAASSPYFAALFAGGMKESSKDVVQILGIEAGIFQILLDFIYTGIVNI
                     GVNNVQELIVAADMLQLTEVVNLCCEFLKGQIDPLNCIGIFQFSEQIACHDLLEFTEN
                     YIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKH
                     VVEVLDPIRFPLLPPQRLLKYIEGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLG
                     VCVCYGAIYALGGWVGAEIGNTIERFDPDENKWEVVGNMAMSRYYFGCCEMQGLIYVI
                     GGISNEGIELCSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSIGGWNETQDAL
                     HTVEKYSFEEEKWVEVASMKVPRAGMCAVAVNGLLYVSGGRSSSHDFLAPGTLDSVEV
                     YNPHSDTWTEIGNMITSRCEGGVAVL"
     misc_feature    599..973
                     /gene="IPP"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in intracisternal
                     A particle-promoted polypeptide (IPP); Region:
                     BTB_POZ_KLHL27_IPP; cd18256"
                     /db_xref="CDD:349565"
     misc_feature    638..1954
                     /gene="IPP"
                     /note="kelch-like protein; Provisional; Region: PHA03098"
                     /db_xref="CDD:222983"
     misc_feature    950..1258
                     /gene="IPP"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     intracisternal A particle-promoted polypeptide (IPP);
                     Region: BACK_KLHL27_IPP; cd18466"
                     /db_xref="CDD:350541"
     misc_feature    1364..1495
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1505..1639
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1649..1786
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1793..1948
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 tggaggtgca aactgcaagc cgtttagcca gccagttgtt gacttcctgg ggagcagcgt
       61 cataggctgc gtgaggagag gagatcccga ctctttcatt agcactgagg ctcgctggtt
      121 gcctgagacg ccacaagaat cgagagaggg taggcggcgt ggaaacggca agccggccag
      181 ccccagaagg cgggagctta agctggccaa aggccattgc cctccgggaa tcaagcacga
      241 gcccagcggc gcagcagccg gcaccgagag ccgccgctct acgtgaacga aagagcagag
      301 cgcacgcgca aacccgccct gccatcggag cgaagaggcc ccctcagccg gccggacctc
      361 gcctcaagcc ctcaacgatc tgcactgccc attcacccgc gccttgtcac cccgccgggc
      421 tttccccgcc ccgtctgtgc gctagcttat cgcggctgcg cactcagagc ctgagcgggc
      481 gccagcggga aggggaagcg gcggggacca gattatgggc aacagtcctt ttaattaatg
      541 tgtcatcatc atggctaatg agggctgtgc caaggctggt gatagtcctt tttcatcaga
      601 taaacatgct caactcatct tggcccagat caataaaatg agaaatggac agcatttctg
      661 tgatgtgcag ctgcaagttg gaaaggaaac tttcaaagtt catcggctgg ttttggctgc
      721 cagtagtcct tactttgcag ctttgttcgc tggaggaatg aaagagtcct caaaagatgt
      781 tgtacagatt ctaggaattg aagctggaat ctttcaaata cttctagatt tcatttacac
      841 aggtatagtg aacataggag tgaataatgt ccaagagctg attgttgcag cagacatgct
      901 acagttgact gaagttgtta atctttgctg tgaatttctg aaaggacaaa ttgatccact
      961 gaactgcatt gggatctttc agttctctga gcagattgcc tgccatgatc ttttggaatt
     1021 tacagaaaac tacattcatg tccatttttt ggaggttcat agtggggaag agttcctggc
     1081 acttacaaaa gatcagttga tcaaaatttt gcgaagtgaa gagcttagca tcgaggatga
     1141 ataccaggtc ttcttagctg caatgcagtg gattctgaaa gatctcggaa agagaagaaa
     1201 acatgtggtg gaagtgctag acccaattcg attcccttta ttacctcctc agaggctttt
     1261 aaagtatata gaaggtgaaa aggattcaat gatttttgac tgtactgaat gctatgatcc
     1321 agttactaaa cagtggacaa ctgtagcttc aatgaatcac ccccgctgtg gcttgggagt
     1381 gtgtgtgtgt tatggggcta tctatgcttt gggtggttgg gttggagctg agatagggaa
     1441 caccattgaa cgatttgatc ccgatgaaaa taaatgggaa gtagttggca acatggctat
     1501 gtcacgctac tactttgggt gttgtgaaat gcaaggttta atttatgtga ttgggggcat
     1561 cagcaatgaa ggaatagagc tttgttcttt tgaagtttat gatccacttt ccaagcgttg
     1621 gtctccactt cctccaatgg gaaccagaag agcatatctt ggggtggctg cactcaatga
     1681 ctgcatctat tctattggag ggtggaatga gacacaagat gctcttcaca ctgtagaaaa
     1741 atattccttt gaagaggaaa agtgggttga agttgcttca atgaaagtgc ctagagcagg
     1801 catgtgtgct gtggcagtca atgggcttct gtatgtttct ggaggtcgat cttccagtca
     1861 tgatttcttg gccccaggta ccttggactc agttgaagtt tataaccctc attcagatac
     1921 atggacagaa attggtaaca tgatcaccag tcgttgtgaa ggaggtgttg ctgtactatg
     1981 aaatagtaag cataagagag cacaggaaac attttgaaaa tacagggtct caccttttgc
     2041 aaatcacact tgtgtttggt gataggaccc tttcatctgt tgagttttct gtgaatttgg
     2101 tagataaatg agtaaaaaat gatttttttt aaagaatttg agtgagaagc gatatggaat
     2161 atatcctaaa tcaataaaga gttcacacaa atttgccaag cttaccagta gatatgctgt
     2221 ttatgctcta gaattgtcca attaggagta gagtcctatt tgtaaaaatg atttgctaga
     2281 agcttcttgg caaatagtcc ctttagctgt ttctccagtg cagttaagct gtaacatgac
     2341 cattgtgtca tttaagaata tcaatgagac agtttaaaga tatctataca ttcatgattc
     2401 aatccagagt gcaattttcc atggtcatag tttaccctac aaagaaaagc caatgaagca
     2461 acttcctact tttattttat tccaggagtt ttcactagtc ccaaactttt tattaacagc
     2521 aggaaaactg ggagggacat gtgggaaata tctagctatt tatatatata agttttcacc
     2581 tgttgataac agcatataaa aagcttttgc tcacttatgg ttttgtcttg atgctggaat
     2641 gcagatgagg aattaatagg aggttcttag tgacagtcct ttattgcaat aggatgatgt
     2701 aatgggtgat agagcccagc aggttgaatg cacctttttc taaatagtta ccaaaaatac
     2761 gtttagcttt gggaagaggg aatttattag attatcaagc ttggtaaagc atactcacac
     2821 ttgggcaagc ctaaatatga gtttagtaca aagctgctcc ctggcttgga gaagatggaa
     2881 ttgtaggtac ttgtaaaact ttttacagat actaactcat aagtgtacgc tgaaaggcct
     2941 ctgacccaaa actgcttctc aaaacttctc attttccctg agaagcattc taaagaattg
     3001 ttttctgtcc atttctgaga tgaagattct ttgtgtacat gatcatcact tttaaattat
     3061 ttctactagt cagttggagc catatatatt aaaggtctta tacatttagg tttacctggc
     3121 tgttccagga tttgatttgt atatccctga tttccccttt tctgtacaat cctccagtat
     3181 attataggca tcagtggctt atttagatag aaaacctttg gtaagcatta aagactcagg
     3241 cagcactcat atccaaaata tttggataga ctcacaaaga tactttcctt cataacttaa
     3301 ccatatgcat atattaagaa aagcttacgt agtgcagaca gaaagctctg tatcccattc
     3361 tttggggtac cctgaaagtc tgaagagtca cagatgcctg gctgggatct gtaaaatgtc
     3421 aaggaatgaa gtatcaagat aatttgtaaa ctatttgagt tgtaactcat gtgcctttaa
     3481 tatttctagt taaagagaat ctgcattctg gttcaagaga tttacaaatt ttcctatcat
     3541 ttaattttca ttattgcctg atgccaacct aaaatggcac tatgaaggga ggcattttgt
     3601 actgctgtgg cagaaatgta gtcaacacaa tcagtgtttg ggcctaatag gtccagacaa
     3661 tgcctgaaaa taagtaatta taaatatgct tatttcctag gtaatgacag attgttttaa
     3721 aaagaatgta ctaataaagt atcttgattt ctttgc
//
LOCUS       XM_032654285            3735 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus intracisternal A particle-promoted
            polypeptide (IPP), transcript variant X4, mRNA.
ACCESSION   XM_032654285
VERSION     XM_032654285.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3735
                     /gene="IPP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765087"
     CDS             551..1960
                     /gene="IPP"
                     /codon_start=1
                     /product="actin-binding protein IPP isoform X3"
                     /protein_id="XP_032510176.1"
                     /db_xref="GeneID:116765087"
                     /translation="MLQLTEVVNLCCEFLKGQIDPLNCIGIFQFSEQIACHDLLEFTE
                     NYIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRK
                     HVVEVLDPIRFPLLPPQRLLKYIEGISDFNLRVALQTLLKEYCEVCKSPKENKFSSFL
                     QTSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQAR
                     CGLGVAVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGA
                     IYALGGWVGAEIGNTIERFDPDENKWEVVGNMAMSRYYFGCCEMQGLIYVIGGISNEG
                     IELCSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSIGGWNETQDALHTVEKYS
                     FEEEKWVEVASMKVPRAGMCAVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDT
                     WTEIGNMITSRCEGGVAVL"
     misc_feature    554..1930
                     /gene="IPP"
                     /note="kelch-like protein; Provisional; Region: PHA03098"
                     /db_xref="CDD:222983"
     misc_feature    605..913
                     /gene="IPP"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     intracisternal A particle-promoted polypeptide (IPP);
                     Region: BACK_KLHL27_IPP; cd18466"
                     /db_xref="CDD:350541"
     misc_feature    1202..1333
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1343..1477
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1484..1624
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1628..1765
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    1772..1927
                     /gene="IPP"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 gcaaactgca agccgtttag ccagccagtt gttgacttcc tggggagcag cgtcataggc
       61 tgcgtgagga gaggagatcc cgactctttc attagcactg aggctcgctg gttgcctgag
      121 acgccacaag aatcgagaga gggtaggcgg cgtggaaacg gcaagccggc cagccccaga
      181 aggcgggagc ttaagctggc caaaggccat tgccctccgg gaatcaagca cgagcccagc
      241 ggcgcagcag ccggcaccga gagccgccgc tctacgtgaa cgaaagagca gagcgcacgc
      301 gcaaacccgc cctgccatcg gagcgaagag gccccctcag ccggccggac ctcgcctcaa
      361 gccctcaacg atctgcactg cccattcacc cgcgccttgt caccccgccg ggctttcccc
      421 gccccgtctg tgcgctagct tatcgcggct gcgcactcag agcctgagcg ggcgccagcg
      481 ggaaggggaa gcggcgggta tagtgaacat aggagtgaat aatgtccaag agctgattgt
      541 tgcagcagac atgctacagt tgactgaagt tgttaatctt tgctgtgaat ttctgaaagg
      601 acaaattgat ccactgaact gcattgggat ctttcagttc tctgagcaga ttgcctgcca
      661 tgatcttttg gaatttacag aaaactacat tcatgtccat tttttggagg ttcatagtgg
      721 ggaagagttc ctggcactta caaaagatca gttgatcaaa attttgcgaa gtgaagagct
      781 tagcatcgag gatgaatacc aggtcttctt agctgcaatg cagtggattc tgaaagatct
      841 cggaaagaga agaaaacatg tggtggaagt gctagaccca attcgattcc ctttattacc
      901 tcctcagagg cttttaaagt atatagaagg aatatccgat tttaatcttc gtgttgcatt
      961 gcaaacactt ttgaaagagt actgtgaggt gtgcaaatct cccaaagaga acaaattttc
     1021 tagttttctg cagacatcta aggttcgacc tcggaagaaa gcaagaaagt acctgtatgc
     1081 agtaggtgga tatactcggt tgcagggggg tcgttggagt gatagtagag ccctcagttg
     1141 tgtagaacgt tttgacacct ttagccagta ctggaccact gtgtcttcac ttcatcaggc
     1201 tcgatgtgga ctgggagtag cagttctggg agggatggtc tacgcaattg gaggtgaaaa
     1261 ggattcaatg atttttgact gtactgaatg ctatgatcca gttactaaac agtggacaac
     1321 tgtagcttca atgaatcacc cccgctgtgg cttgggagtg tgtgtgtgtt atggggctat
     1381 ctatgctttg ggtggttggg ttggagctga gatagggaac accattgaac gatttgatcc
     1441 cgatgaaaat aaatgggaag tagttggcaa catggctatg tcacgctact actttgggtg
     1501 ttgtgaaatg caaggtttaa tttatgtgat tgggggcatc agcaatgaag gaatagagct
     1561 ttgttctttt gaagtttatg atccactttc caagcgttgg tctccacttc ctccaatggg
     1621 aaccagaaga gcatatcttg gggtggctgc actcaatgac tgcatctatt ctattggagg
     1681 gtggaatgag acacaagatg ctcttcacac tgtagaaaaa tattcctttg aagaggaaaa
     1741 gtgggttgaa gttgcttcaa tgaaagtgcc tagagcaggc atgtgtgctg tggcagtcaa
     1801 tgggcttctg tatgtttctg gaggtcgatc ttccagtcat gatttcttgg ccccaggtac
     1861 cttggactca gttgaagttt ataaccctca ttcagataca tggacagaaa ttggtaacat
     1921 gatcaccagt cgttgtgaag gaggtgttgc tgtactatga aatagtaagc ataagagagc
     1981 acaggaaaca ttttgaaaat acagggtctc accttttgca aatcacactt gtgtttggtg
     2041 ataggaccct ttcatctgtt gagttttctg tgaatttggt agataaatga gtaaaaaatg
     2101 atttttttta aagaatttga gtgagaagcg atatggaata tatcctaaat caataaagag
     2161 ttcacacaaa tttgccaagc ttaccagtag atatgctgtt tatgctctag aattgtccaa
     2221 ttaggagtag agtcctattt gtaaaaatga tttgctagaa gcttcttggc aaatagtccc
     2281 tttagctgtt tctccagtgc agttaagctg taacatgacc attgtgtcat ttaagaatat
     2341 caatgagaca gtttaaagat atctatacat tcatgattca atccagagtg caattttcca
     2401 tggtcatagt ttaccctaca aagaaaagcc aatgaagcaa cttcctactt ttattttatt
     2461 ccaggagttt tcactagtcc caaacttttt attaacagca ggaaaactgg gagggacatg
     2521 tgggaaatat ctagctattt atatatataa gttttcacct gttgataaca gcatataaaa
     2581 agcttttgct cacttatggt tttgtcttga tgctggaatg cagatgagga attaatagga
     2641 ggttcttagt gacagtcctt tattgcaata ggatgatgta atgggtgata gagcccagca
     2701 ggttgaatgc acctttttct aaatagttac caaaaatacg tttagctttg ggaagaggga
     2761 atttattaga ttatcaagct tggtaaagca tactcacact tgggcaagcc taaatatgag
     2821 tttagtacaa agctgctccc tggcttggag aagatggaat tgtaggtact tgtaaaactt
     2881 tttacagata ctaactcata agtgtacgct gaaaggcctc tgacccaaaa ctgcttctca
     2941 aaacttctca ttttccctga gaagcattct aaagaattgt tttctgtcca tttctgagat
     3001 gaagattctt tgtgtacatg atcatcactt ttaaattatt tctactagtc agttggagcc
     3061 atatatatta aaggtcttat acatttaggt ttacctggct gttccaggat ttgatttgta
     3121 tatccctgat ttcccctttt ctgtacaatc ctccagtata ttataggcat cagtggctta
     3181 tttagataga aaacctttgg taagcattaa agactcaggc agcactcata tccaaaatat
     3241 ttggatagac tcacaaagat actttccttc ataacttaac catatgcata tattaagaaa
     3301 agcttacgta gtgcagacag aaagctctgt atcccattct ttggggtacc ctgaaagtct
     3361 gaagagtcac agatgcctgg ctgggatctg taaaatgtca aggaatgaag tatcaagata
     3421 atttgtaaac tatttgagtt gtaactcatg tgcctttaat atttctagtt aaagagaatc
     3481 tgcattctgg ttcaagagat ttacaaattt tcctatcatt taattttcat tattgcctga
     3541 tgccaaccta aaatggcact atgaagggag gcattttgta ctgctgtggc agaaatgtag
     3601 tcaacacaat cagtgtttgg gcctaatagg tccagacaat gcctgaaaat aagtaattat
     3661 aaatatgctt atttcctagg taatgacaga ttgttttaaa aagaatgtac taataaagta
     3721 tcttgatttc tttgc
//
LOCUS       XM_032654300            2160 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 69 (TMEM69),
            transcript variant X1, mRNA.
ACCESSION   XM_032654300
VERSION     XM_032654300.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2160
                     /gene="TMEM69"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116765101"
     CDS             161..928
                     /gene="TMEM69"
                     /codon_start=1
                     /product="transmembrane protein 69"
                     /protein_id="XP_032510191.1"
                     /db_xref="GeneID:116765101"
                     /translation="MGPTMVHFIQKFSRASSKMLKYPSTIRLGARRRIEKFSLKTGLQ
                     QNFSPLFPRPWLVSSFPVCMCKTQYYHTSPCSFKKKQEQAVLPARPPQTISYLPDSPK
                     PALYITLAGLIPFIAPPLVMVMTKTYIPILAFTQMAYGASFLSFLGGIRWGFTLPQGS
                     PAKPDFLNLANSTAPVVFSWLAFFVSERLSEAIVTVIIGLGIALHTELFLLPHYPNWF
                     KALRMVVTLVAFISFVITLLVKGFYPEKGPKRLRQVE"
     misc_feature    458..874
                     /gene="TMEM69"
                     /note="Protein of unknown function (DUF3429); Region:
                     DUF3429; pfam11911"
                     /db_xref="CDD:463393"
ORIGIN      
        1 gccggaagtg cttttccgca gtaccaagct gttcttgcaa ttcagctttc cacctccccg
       61 cgcgacgctg gcagcaacat gcttctgatt cagatgttcc actgagctat aaaaatacat
      121 taatcagaac tgtgtggcat cttcctaagc aagactttca atggggccca ctatggttca
      181 cttcatccag aagttttctc gagcatcttc aaagatgctg aagtaccctt ccacaatcag
      241 actaggagcc agaaggagaa tagaaaaatt ttctctcaaa acaggcctcc agcagaactt
      301 ttcccctttg tttccaaggc cttggcttgt ctcatcattt ccagtgtgta tgtgcaagac
      361 acaatattat cacacttccc catgcagctt taagaagaag caagagcaag cagtacttcc
      421 agccaggcca ccacaaacca tcagttacct gcctgacagc ccaaagccag cattatacat
      481 aactctggca ggactaatcc ccttcattgc tccaccactt gtcatggtga tgacaaagac
      541 ttatattccc atattagctt ttactcagat ggcttatgga gccagtttcc tatctttctt
      601 gggagggatc agatggggtt ttactctgcc acaaggtagt ccagccaaac cagacttcct
      661 caatttagct aatagtacag ctcctgttgt gttttcatgg cttgcgttct ttgtttctga
      721 aagactcagt gaagctatag tcacagtaat aataggtttg gggatagcat tacacactga
      781 actttttctc ttgccacatt atcccaattg gttcaaagcc ctgaggatgg tagtcacttt
      841 agtggccttt atttcatttg taatcacttt actagttaaa ggtttttatc cagagaaggg
      901 acccaagaga cttaggcaag tagaataaat ataaaactac tctgtagatg acgttagcat
      961 gttggctaga agccttgtaa ggttgtgttt tggcatcacc tttttctacc tctccagttt
     1021 agctcttttt tccccaccag tggtgattta ttcttcccaa attattcttc atttctagaa
     1081 atctttattt tataaggaat cactgagaaa cagcttgaaa acccttaaca agtccttttc
     1141 atgttatatt aggttatagt tcttattcag tctttttatg aactttatag tcatccactt
     1201 aaaaatttca atgttttaat tgttttgaaa aatgtaaatt aaaagatgaa aaacctttgt
     1261 gctagagctt taggatcatt gaaaacacac acacacacac acacaccccc tccctccctc
     1321 cctccctccc tccctcagag gaaaacttgg tatccatgag tgtctgaaaa taataggtgg
     1381 ctccagtgtg gagttttcat tgcagttgcc cctgggaatt gcatttccaa gctcttttta
     1441 cctggcacaa cctagttatt tgaactgaaa ggatctgtgg ctctgaagtc agtagggagc
     1501 agtgtcacga gggaaaacta tgttcaaaga aaagctagac acattttcca ggttttacca
     1561 ggatatttgg cagaatatag atgcaactta tctccaaaca taacactagc tggtcaaaaa
     1621 tagttagcct ctaggatata caaactagga aaagtcaagc tggagacatc ttaatgttct
     1681 atctagtttt gcatgtcaac tcacacaaaa gcttttttaa aacagtaaaa gcaacacctt
     1741 gaattctaac tttaaaactt agtcttttga gatgcttagt ctcataaaaa aggagaaaca
     1801 ttttcaatgt tataagaatt taaatcagga aatgttatca tctggtatac gttacctttg
     1861 tataagtatt cgaatattag gtaacttaaa tttcgtaagt aaattatata catataattt
     1921 ttactttaat gattcttgct gtggaaagat cataatctaa agtggtaact tgtttactct
     1981 gttacacacc tgttacaaga tttttttatg aattgtgtgt tcaactccta atccacagca
     2041 tctcagaatg tgaccttact tgcagatagg gtctttacag agttattaat aaggttaaag
     2101 tgaggttata agggtaggtt gtaatgtaat attactggtg ttcttataat ggaaaatgta
//
LOCUS       XR_004353145             497 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 69 (TMEM69),
            transcript variant X2, misc_RNA.
ACCESSION   XR_004353145
VERSION     XR_004353145.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..497
                     /gene="TMEM69"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116765101"
     misc_RNA        1..497
                     /gene="TMEM69"
                     /product="transmembrane protein 69, transcript variant X2"
                     /db_xref="GeneID:116765101"
ORIGIN      
        1 gccggaagtg cttttccgca gtaccaagct gttcttgcaa ttcagctttc cacctccccg
       61 cgcgacgctg gcagcaacat gcttctgatt cagatgttcc actgagctat aaaaatacat
      121 taatcagaac tgtgtggcat cttcctaagc aagactttca atggggccca ctatggttca
      181 cttcatccag aagttttctc gagcatcttc aaagatgctg aagtaccctt ccacaatcag
      241 actaggagcc agaaggagaa tagaaaaatt ttctctcaaa acaggcctcc agcagaactt
      301 ttcccctttg tttccaaggc cttggcttgt ctcatcattt ccagtgtaga gaataccatg
      361 tgaacatgaa gatctacatg ccaaggagag aagccttgaa tagatccctc cttcttagcc
      421 ctcagaagga accaactcca ccaacacctt gacttcaggc ctccaaaacc gtgagacaat
      481 aaattctgtt gtttcaa
//
LOCUS       XM_032654315            2487 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LysM domain containing 1 (LYSMD1), mRNA.
ACCESSION   XM_032654315
VERSION     XM_032654315.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2487
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2487
                     /gene="LYSMD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 2 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765107"
     CDS             717..1394
                     /gene="LYSMD1"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 1"
                     /protein_id="XP_032510206.1"
                     /db_xref="GeneID:116765107"
                     /translation="MASPSRQAPLGGSGLLQGSRARSYGSLVQSACSPVRERRLEHQL
                     APGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEE
                     KDGEEEVQPTKDEVGPHSAERKKQETGSGRANGEVLPTAGQEPPIHDLSASDFLKKLD
                     SQISLSKKAAAQKLKKGESGIPGEDSGLHLSSPRMQQRAVLGPVPLTRTSRTRTLRDQ
                     EDEIFKL"
     misc_feature    <783..971
                     /gene="LYSMD1"
                     /note="LysM repeat [Cell wall/membrane/envelope
                     biogenesis]; Region: LysM; COG1388"
                     /db_xref="CDD:440998"
ORIGIN      
        1 cggatgggga ctgcatttcc tatggtgccc tgcgaccccg ccggcgcgga gcctttaggg
       61 aaatgaagtc tttttttcaa agaacttgcc gctgggctgg atacaggccc ctgcatcttg
      121 acagattcga gggtttggag ggataagaac ctagatgtgg agcccgaatt tgagggtgtg
      181 actaatttga tgtggagggt acctttgagg atctctgagg ggaaagtgtg ctgtagactc
      241 tcgctttcat cacgcgcttc tcctgcggcc acagcccacc tggggtgggc ctgatttgtt
      301 cccgacccta gccggcccac cccgggacgg ggcggagtcg gggtgttgag gggccgggag
      361 gtcgggctgc cggacctagg ggcaaactga gctgagtgtt gaggaggttg tctagaattc
      421 aaaggtcaga ggtcaatgtc gcgagttgtc gtggggaatc gaaagtcgga ggggtgctaa
      481 ggagagactc aggtagagac tgaatagtcg gagtacagat tggtgggaaa ggggcttgga
      541 gggaggagaa gcgagggctg tgaggtcgcg tagtgccggg ggaggcgggg agacttagga
      601 cagaagactg aaggggaaag gaatcctcta agtcttagag accccgggcc cgtcactatt
      661 ggtcacttag acaggcctcc cgcagttgca atcccagttg tccgcagggt gaggagatgg
      721 cttctccctc tagacaggcc ccccttggcg ggtcaggact gcttcaaggg agccgggctc
      781 gttcttatgg aagcctggtg cagtctgcct gctccccggt gagggaaaga cgcctggagc
      841 atcagttggc gcccggagac accctggctg gactagcact caaatacggg gtgacgatgg
      901 aacagattaa gcgtgcaaac cgcctttata ctaatgactc gatcttcctg aagaaaaccc
      961 tctacatccc catcctgaca gagcccagag acctgttcaa tggtttggat tctgaggaag
     1021 agaaggatgg agaggaagag gtacagccaa ctaaggatga agttgggcca cactcagctg
     1081 agaggaagaa acaagagaca ggttcgggac gtgccaatgg tgaagtcctt cccacagctg
     1141 gccaggagcc ccccattcat gacctctctg cctctgattt ccttaagaag cttgattcac
     1201 agatcagctt gtcaaagaag gctgctgccc agaaactgaa aaagggagaa agtgggatac
     1261 ctggggagga ttcaggtctt cacctgagtt ctcctcggat gcagcaacga gcagtcctag
     1321 gtcctgtgcc gctgacccgg acctctcgga cccggacact tcgggaccag gaggatgaaa
     1381 tcttcaaact ctgatgtctc cagaactgat tgagagaagc cagatgttga aggagcaact
     1441 tgagggagag aggagcctga ggtgaggctc aggaacatgg cctcccagcc cacctccctt
     1501 actcctgcca tcttccgagc ctacttgtcc gtcaggagtt ccttggtctg gagcagttct
     1561 attggcaagg gtaggggatg ggaaatagac cccttctcag ttctggggct gaatctaggg
     1621 ttgtccttta gattcaaaag gctcttttaa catccctgct gcctttccca tccctttcac
     1681 cattccttgg ccttagagca gggaggcagg gactctcaca gccccgaact tcctccccat
     1741 ctccaactat gttacctaat ttatttggtg ctatattgaa gtattattta tttgctatat
     1801 cttattcttt cccactatta gctgaaaaac gggatttcta tagccctggg atgaggggaa
     1861 cccaggaaca gtaagtgagc cagtgactcc tggcccacct tccccgcctt cttagccagc
     1921 cgtgttattg agaacgggca atcagtgatc tagcactgct gcagggaatg gcagactgtg
     1981 cctcgccccc agtctcaaat ggaagaattt gggctcagtc ttgactaacc aggtcactat
     2041 aactttttca caactcttgc tctgagaaaa aaacagctat gtagggtcct gaactctcca
     2101 tgccaccagt tcacccttct aatctgctcc tctgttcagc ctgtgtgagg ctaagggatg
     2161 gaagaagaat tgctgtggag tttgaagagg aggacagttg tgggagtctt tttcttatat
     2221 cctctcccga ccagagccta ttgatctatg tcttgctcct cactgcatat ttatttgcaa
     2281 tttgtagcac tgatctgcgg tacagttttt tttgagtttc ttaaacagaa gaagtaggca
     2341 agggaacccc ggtgatgctg gaaatatgcc tcagtctcct gtatggaaat ggtgagaggt
     2401 gagatgagtg gtgtttatat acctctttcc tctgtgatga tcataagata caagaagctg
     2461 gagagattaa acattgagcc ctgtgca
//
LOCUS       XM_032654326            1270 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF alpha induced protein 8 like 2
            (TNFAIP8L2), transcript variant X1, mRNA.
ACCESSION   XM_032654326
VERSION     XM_032654326.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1270
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1270
                     /gene="TNFAIP8L2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 18 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765111"
     CDS             199..753
                     /gene="TNFAIP8L2"
                     /codon_start=1
                     /product="tumor necrosis factor alpha-induced protein
                     8-like protein 2"
                     /protein_id="XP_032510217.1"
                     /db_xref="GeneID:116765111"
                     /translation="MESFSSKSLALQAEKKLLSKMAGRSVAHLFVDETSSEVLDELYR
                     VSKEYTHSRPQAQRVIKDLIKVAVKVAVLHRSGCFSPSELALATRFRQKLRQGAMTAL
                     SFGEVDFTFEAAVLAGLLTECRDVLLELVERHLTPKSHGRIRHVFDHFSDPGLLTALY
                     GPDYTQHLGKICDGLRKLLDEGKL"
     misc_feature    271..744
                     /gene="TNFAIP8L2"
                     /note="Domain of unknown function (DUF758); Region:
                     DUF758; pfam05527"
                     /db_xref="CDD:461672"
ORIGIN      
        1 ccttttattt ctaggaggct gtcggggtca tagagcttct tggtgacagt gtgatgaagg
       61 gaggttgagc acagagtagg taggcggggc ttaggggtgg ggccaggcca aagggcctct
      121 cacttaggag cttctccatt ctgtcagctc tcccggaaca tccaaggcaa gactggcacc
      181 cagggcgcag caggaatcat ggagtccttc agttcaaaga gtctggcgct gcaagcagag
      241 aagaagctgc tgagtaagat ggcaggtcga tctgtggctc atctcttcgt cgatgagacg
      301 agcagcgagg tgctagacga gctctaccgt gtgtccaaag aatacacaca cagcaggccc
      361 caggcccagc gggttatcaa ggacctgatc aaggtggccg tcaaggtggc cgtgctgcac
      421 cgcagtggct gcttcagccc cagcgagctg gccttggcta cccgctttcg ccagaagctg
      481 cggcagggcg ccatgaccgc actcagcttc ggcgaggtgg acttcacctt tgaggctgct
      541 gtgctggccg gcctgctgac cgagtgccgg gatgtgctgc tggaactggt ggagcgccac
      601 ctcacaccca agtcacatgg ccgcatccgc cacgtgtttg atcacttctc tgacccaggc
      661 ctgctcacgg ccctctatgg gcctgactac actcagcacc ttggcaagat ctgtgatggg
      721 ctcaggaagc tgctggatga agggaagctc tgagaaccct gaccctggca cgttccttct
      781 tggcaaaatg gctgactgag aaaaaaacag ataatgggct ctctaaccct gctcatctgc
      841 actaatgctt ttcaaccctc aggtttcagt ctttcccaag agtgcctgtg actctgagac
      901 caccccatgc ccagctgctg gtggagaaga agcgatgctg agggttgagg cctctctcct
      961 actccagccc caagacagga aacaaaactg cctgaaaaag atgaagcgaa acttggatct
     1021 ctattttccc cacaagggac ctttcaaaca gggaagcccc ctcccctcag aaccagggga
     1081 agagggcgta gcccatctca ctcctctggg gacactaaag acaggcggcg cagggagcct
     1141 ttagagatat cctagacttt cagttctagg cggagtctgg acagatacca gagactctgc
     1201 tccagagggc aggaagaagg ggctagggca ggggagagtc tcacagagga aataaaacta
     1261 ttaaaacatg
//
LOCUS       XM_032654337            2911 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF alpha induced protein 8 like 2
            (TNFAIP8L2), transcript variant X2, mRNA.
ACCESSION   XM_032654337
VERSION     XM_032654337.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2911
                     /gene="TNFAIP8L2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765111"
     CDS             786..1340
                     /gene="TNFAIP8L2"
                     /codon_start=1
                     /product="tumor necrosis factor alpha-induced protein
                     8-like protein 2"
                     /protein_id="XP_032510228.1"
                     /db_xref="GeneID:116765111"
                     /translation="MESFSSKSLALQAEKKLLSKMAGRSVAHLFVDETSSEVLDELYR
                     VSKEYTHSRPQAQRVIKDLIKVAVKVAVLHRSGCFSPSELALATRFRQKLRQGAMTAL
                     SFGEVDFTFEAAVLAGLLTECRDVLLELVERHLTPKSHGRIRHVFDHFSDPGLLTALY
                     GPDYTQHLGKICDGLRKLLDEGKL"
     misc_feature    858..1331
                     /gene="TNFAIP8L2"
                     /note="Domain of unknown function (DUF758); Region:
                     DUF758; pfam05527"
                     /db_xref="CDD:461672"
ORIGIN      
        1 gtggcagaag agtcctagct ctgtcagcct gagctttcca tattgtgaga ctctcatttg
       61 atagaattct tgagccccca gtggggaggt ccagctcagt tcttcctggg gccaggcagc
      121 ctcagtaaga catggtttgg tttgggtggg ggcagggctg agggatggcg gtggataagg
      181 gtatgtgaga gactactgag aggtgcaagg agatcttagg agacatggag gtagatgtag
      241 gggccagcag gagagcatgg ccagagggcc acagggcagg actcagacaa gagaaaacag
      301 gagactgaaa cacggagagg gggagaggac agtggacaaa acgtgagatg gcaacggggg
      361 cactggagag ctgggtagca ggaaggccaa ggaggaagga aggctcacat ggagcaatct
      421 cctcttccgg atgtacagcc tggtccagaa agccccaggc aaagccggga gcagagcaag
      481 gttccagatt cccactggac cgattcagct gggggagaac cacccctcct cccagttacc
      541 cacctcccct gcttcttcag actcctattt cgtttggggg agagggcaag gctgctcctc
      601 actgcggtca gagccacatc ctgcagagca ggggaggggg aagtaagaag caaaacaagc
      661 agaaccacca caggcgaaga ccatggggag agcgccctgg atacttgcag ctgatgtgcc
      721 accaggaggt cctcagcaca gtcccagcag agaacctgag acctctagga ctgtcttgag
      781 gaatcatgga gtccttcagt tcaaagagtc tggcgctgca agcagagaag aagctgctga
      841 gtaagatggc aggtcgatct gtggctcatc tcttcgtcga tgagacgagc agcgaggtgc
      901 tagacgagct ctaccgtgtg tccaaagaat acacacacag caggccccag gcccagcggg
      961 ttatcaagga cctgatcaag gtggccgtca aggtggccgt gctgcaccgc agtggctgct
     1021 tcagccccag cgagctggcc ttggctaccc gctttcgcca gaagctgcgg cagggcgcca
     1081 tgaccgcact cagcttcggc gaggtggact tcacctttga ggctgctgtg ctggccggcc
     1141 tgctgaccga gtgccgggat gtgctgctgg aactggtgga gcgccacctc acacccaagt
     1201 cacatggccg catccgccac gtgtttgatc acttctctga cccaggcctg ctcacggccc
     1261 tctatgggcc tgactacact cagcaccttg gcaagatctg tgatgggctc aggaagctgc
     1321 tggatgaagg gaagctctga gaaccctgac cctggcacgt tccttcttgg caaaatggct
     1381 gactgagaaa aaaacagata atgggctctc taaccctgct catctgcact aatgcttttc
     1441 aaccctcagg tttcagtctt tcccaagagt gcctgtgact ctgagaccac cccatgccca
     1501 gctgctggtg gagaagaagc gatgctgagg gttgaggcct ctctcctact ccagccccaa
     1561 gacaggaaac aaaactgcct gaaaaagatg aagcgaaact tggatctcta ttttccccac
     1621 aagggacctt tcaaacaggg aagccccctc ccctcagaac caggggaaga gggcgtagcc
     1681 catctcactc ctctggggac actaaagaca ggcggcgcag ggagccttta gagatatcct
     1741 agactttcag ttctaggcgg agtctggaca gataccagag actctgctcc agagggcagg
     1801 aagaaggggc tagggcaggg gagagtctca cagaggaaat aaaactatta aaacatgcac
     1861 agggctcaat gtttaatctc tccagcttct tgtatcttat gatcatcaca gaggaaagag
     1921 gtatataaac accactcatc tcacctctca ccatttccat acaggagact gaggcatatt
     1981 tccagcatca ccggggttcc cttgcctact tcttctgttt aagaaactca aaaaaaactg
     2041 taccgcagat cagtgctaca aattgcaaat aaatatgcag tgaggagcaa gacatagatc
     2101 aataggctct ggtcgggaga ggatataaga aaaagactcc cacaactgtc ctcctcttca
     2161 aactccacag caattcttct tccatccctt agcctcacac aggctgaaca gaggagcaga
     2221 ttagaagggt gaactggtgg catggagagt tcaggaccct acatagctgt ttttttctca
     2281 gagcaagagt tgtgaaaaag ttatagtgac ctggttagtc aagactgagc ccaaattctt
     2341 ccatttgaga ctgggggcga ggcacagtct gccattccct gcagcagtgc tagatcactg
     2401 attgcccgtt ctcaataaca cggctggcta agaaggcggg gaaggtgggc caggagtcac
     2461 tggctcactt actgttcctg ggttcccctc atcccagggc tatagaaatc ccgtttttca
     2521 gctaatagtg ggaaagaata agatatagca aataaataat acttcaatat agcaccaaat
     2581 aaattaggta acatagttgg agatggggag gaagttcggg gctgtgagag tccctgcctc
     2641 cctgctctaa ggccaaggaa tggtgaaagg gatgggaaag gcagcaggga tgttaaaaga
     2701 gccttttgaa tctaaaggac aaccctagat tcagccccag aactgagaag gggtctattt
     2761 cccatcccct acccttgcca atagaactgc tccagaccaa ggaactcctg acggacaagt
     2821 aggctcggaa gatggcagga gtaagggagg tgggctggga ggccatgttc ctgagcctca
     2881 cctcaggctc ctctctccct caagttgctc c
//
LOCUS       XM_032654350            2370 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fibronectin type III domain containing 7
            (FNDC7), mRNA.
ACCESSION   XM_032654350
VERSION     XM_032654350.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2370
                     /gene="FNDC7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 6%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116765118"
     CDS             21..2222
                     /gene="FNDC7"
                     /codon_start=1
                     /product="fibronectin type III domain-containing protein
                     7"
                     /protein_id="XP_032510241.1"
                     /db_xref="GeneID:116765118"
                     /translation="MAGGQVKCLSVIGFSLICLNMVASTKTAPKIPTIDQAYSKISNS
                     ITVEWATVPGATGYLLTARDGNAVIETVVASSPGTVTGLKAATLYQITIRSISPAGRS
                     QASPPKQAKTVLAAPILQVSSPSPDSILVQWETVYMATGFSVSIMRANGLGRIWKENT
                     TNTSLTFTSLDAGTLYTIKAYAWNASGTPGDDSTCNQRTGPRAPANIQVSFDSGSLKA
                     YVSWAPTEGAFNYTVMALSDSSRLSCSTTFSSCTISSLQCGTEYLISVLATNDAGSSR
                     SISAVTLRTVACAPGRVTIQEDPPGHLSVVWSSVHLGDYYVAFVKNDDGLEVHCNTSL
                     TQCNFLSECGFTYFISVFAYNKAGQSPLGDVFNYTTAPCCPGDINPVLVSSDRVEIVW
                     SPVRGAELYETKAVDGFSVVECNDTVPACTLSALECDTKYNITVYSFSEVRGSNTPCT
                     SRFITTAPCSPEIKNVSKDAFSMINVYWRSTNDEATYTVTAQGEKGLHRCSSTGESCT
                     LWGLPCGSVFSVTAVAETPAGRSLPSYSVPLETVPCCPASLTVTQVTQSVINVSWTVG
                     TGAQTYVTALESHTGQSKCHTHQNHCLLGCVTCGINYTVALKAISATGLTADCGYQSY
                     SSSSCCPLGVKLYRLVPNGIRIHWQASRGSANYSTDLYGSKGIFTCAPSAGLSFCDIT
                     EIPCGDVYTVMVSPVAETGLKLTFCPKKIYSVTCSGSTLGMVIYRGKRNAV"
     misc_feature    <84..992
                     /gene="FNDC7"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
ORIGIN      
        1 tgagtgctca gtccaacagg atggctggtg gacaggtgaa atgtttgtct gtgattggat
       61 tcagtcttat ctgccttaat atggttgctt caacaaaaac agctcccaaa atacccacta
      121 tcgatcaggc atattcaaaa atcagcaaca gtatcactgt ggaatgggct acagtgccag
      181 gggccaccgg ttacctcctc acggccagag acgggaacgc tgtcattgaa acagtggtgg
      241 ccagttcccc aggcactgtg acaggcctga aggctgcaac cttgtaccaa atcaccatca
      301 gatccatcag tcctgctggg agaagccagg catcgcctcc aaaacaggca aagacagtgc
      361 tggctgcacc aattctacaa gtaagctctc caagtccaga ctctattctt gtgcagtggg
      421 aaaccgtata tatggcaact ggattttctg tgtccattat gcgagctaat ggtttgggga
      481 gaatatggaa agaaaatacc accaacacct ccttgacatt caccagttta gacgctggga
      541 ctctctacac cataaaggcc tatgcgtgga atgccagcgg aacacctggg gatgactcca
      601 cctgcaatca gagaacaggt cctcgtgctc ctgccaacat tcaagtctct tttgatagtg
      661 gttctctgaa ggcatatgtt tcatgggcac caacagaagg agctttcaac tataccgtga
      721 tggctttgag tgactcttcc aggctgagct gtagtacgac tttcagttcc tgcaccatct
      781 cctctctcca gtgtggaacc gagtacctga tatcagtttt agcaactaat gatgccggat
      841 ctagcagatc aatttcagca gtgaccctga gaactgttgc ttgtgcacct ggaagggtga
      901 caatccaaga agatccccct ggccacctgt ctgtggtttg gtccagcgtg catctgggtg
      961 attactatgt ggcctttgtg aagaatgacg atggcttgga agtacactgc aacacctccc
     1021 tcacccagtg caatttctta tctgagtgtg gcttcacgta ctttattagt gtttttgcct
     1081 ataacaaggc aggacagagt cctttgggtg atgtgtttaa ttataccaca gccccctgtt
     1141 gtcctggcga cattaaccct gtgttggtgt ctagtgacag agtagagatc gtctggtctc
     1201 ctgtccgtgg tgccgaactt tatgaaacca aggctgtaga tgggttcagc gtggttgaat
     1261 gcaatgacac tgttccggct tgcacccttt ctgctctaga gtgtgacacc aagtacaaca
     1321 tcacggtgta ttccttcagt gaagtccggg gcagcaatac accgtgtact tcccgattta
     1381 taaccacagc tccttgcagt cctgaaatca aaaatgtttc gaaggatgcc ttttccatga
     1441 ttaacgtgta ctggcgatcc actaatgatg aggccactta cacggtgact gcccagggag
     1501 agaaagggct gcaccggtgc agcagcacgg gagagtcctg caccttgtgg ggcttgccct
     1561 gcggctcagt gttctccgtc accgctgtgg ctgaaacacc agcaggacgg agcctgccca
     1621 gctacagtgt gcccttagaa acggtgccgt gctgcccagc cagtctgaca gtaactcagg
     1681 tcacacaatc ggtaatcaac gtgagctgga ctgttgggac cggcgcccaa acctatgtga
     1741 cagctctgga gtcacacact ggacagtcta agtgtcacac ccatcaaaac cactgcctcc
     1801 tgggatgcgt cacatgcggc atcaattaca cagtggcatt aaaagcaatt agtgccactg
     1861 ggttgactgc ggactgtggc taccaaagtt attcctcgag ttcctgctgc cctttggggg
     1921 tgaaattata taggctggtc cctaatggca tccggatcca ctggcaggcc tccaggggct
     1981 ctgccaatta cagcactgac ctctatggtt ccaaaggcat tttcacgtgt gccccaagcg
     2041 ctggcctcag tttctgtgat atcaccgaga taccctgcgg ggatgtatat accgtgatgg
     2101 tctccccagt tgctgagaca ggactgaagc ttactttctg tccaaaaaaa atatattcag
     2161 taacctgctc tggaagtaca cttggaatgg tgatttacag agggaagaga aatgcggtgt
     2221 gacatagtga accatggata aaaaaagaga cttgactaag tttcctcaat tgttagtgtg
     2281 attagagatg gaaaagatct attagaatac aaaatgcctc taggatagga caagcccttt
     2341 tggcctttag agaaccactc tagctccatt
//
LOCUS       XM_032654359             410 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase H+ transporting V1 subunit G3
            (ATP6V1G3), mRNA.
ACCESSION   XM_032654359
VERSION     XM_032654359.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..410
                     /gene="ATP6V1G3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116765122"
     CDS             14..370
                     /gene="ATP6V1G3"
                     /codon_start=1
                     /product="V-type proton ATPase subunit G 3"
                     /protein_id="XP_032510250.1"
                     /db_xref="GeneID:116765122"
                     /translation="MTSQSQGIHQLLQAEKRAKDKLEEAKKRKAKRLRQAKEEAMAEI
                     DQYRMQRDQEFRQKHAKIMGSQSNISEEIEAQTLEKIKELNGSYNKSMESVINQLLSI
                     VCDVKPEIHANYRIAN"
     misc_feature    20..334
                     /gene="ATP6V1G3"
                     /note="Vacuolar (H+)-ATPase G subunit; Region: V-ATPase_G;
                     pfam03179"
                     /db_xref="CDD:460836"
ORIGIN      
        1 tggagccgcc gccatgacca gccagtctca agggatccac cagctcctcc aggcagagaa
       61 aagggccaag gacaagctcg aggaggctaa gaagagaaaa gccaagcgtt tgcgtcaagc
      121 caaggaggaa gcaatggcag aaattgacca gtacagaatg cagagagatc aggaatttcg
      181 acagaaacac gctaagataa tgggctctca gagtaatatc tcagaagaaa tagaagcgca
      241 aacgctagag aagataaaag aactgaatgg aagctacaac aagtccatgg aaagtgtgat
      301 caaccagctt ttgagcatcg tctgtgacgt gaaaccagaa atccacgcaa actacagaat
      361 tgccaactaa atgtgcaccc cattgttcaa taaatggtgt ctgcatgccc
//
LOCUS       XM_032654372            1949 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus troponin I1, slow skeletal type (TNNI1),
            transcript variant X1, mRNA.
ACCESSION   XM_032654372
VERSION     XM_032654372.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1949
                     /gene="TNNI1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765125"
     CDS             751..1605
                     /gene="TNNI1"
                     /codon_start=1
                     /product="troponin I, slow skeletal muscle isoform X1"
                     /protein_id="XP_032510263.1"
                     /db_xref="GeneID:116765125"
                     /translation="MQGQRDGPLSPRPPGALAPPLLGAPSSRLSIPPFRGCRLLGGGR
                     CVQRRRVLLSRAHVCLQARRLLCLLRCPLRESAVNRKARPSHPRRPRKVPPHRRHAGR
                     RKPKITASRKLLLKSLMLAKAKECWEQEHEAREAEKSRYLAERIPALQTRGLSLSALQ
                     DLCRDLHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVLDLRGKFKRPPLRRVRVSAD
                     AMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPVEVGDWRKNVEAMSGMEGRKKMFD
                     AAKSPTSQ"
     misc_feature    1084..1479
                     /gene="TNNI1"
                     /note="Region: Troponin; pfam00992"
                     /db_xref="CDD:460018"
ORIGIN      
        1 ccccgttctc cctccctggc agccttcttg catggaggct tcccaaaggt gacctgacca
       61 acgcaaaatc agagcaactt ctgctggccc agagggaggc gcctctacca ctccctggca
      121 cttgggtatg tcccctgagg acagccctgt ccacgagctc tgttcccacc cgactgacac
      181 ttggctagag ctccccagct tcttgctgct gacaagacct ttcctggcct ccgagagggg
      241 tcagcgtcct gcttgtcctg ccctagcctg ggctcccggc tcatgagatg accaataata
      301 atagccgctg gattaacata gcaggcattg tcttcctctg accatagggt gggtattagg
      361 tgttcatcca tcatcctaaa aatagccagt gaacaggtgc agcccctgca caccagcccc
      421 ccggatactg ttggcatgtg gccgtgacag agggtgggtc aggggacaga gggagttagt
      481 ttcaccaagt tccaggcacg gtgtgtgggg cgccgtttgg aacctgggaa acccaccagg
      541 agagggtgca gagcatctgt ggaccctcag acgccatgag cttgaaggtc agcttagccc
      601 caggaccctc actggacccc ctcagcactg tttacatcac ccccaggtcc aggagtctcc
      661 ctggcgcacg tgtagcagag cctcagaaga tgcccgaatg tcaagccttt tgccctcttg
      721 gagcctggtt cccgcattcc cttgcgagag atgcagggcc agcgagacgg ccccctttcc
      781 cccaggcctc ccggtgccct ggcgccaccc ctgcttggag ccccatccag tcggctatcc
      841 attccccctt tccggggctg ccgtctccta ggtggtggcc gctgtgtgca gaggcgccgt
      901 gtcctcctga gccgggcaca cgtgtgtctt caagcccgcc ggctgctgtg cctgctgcgg
      961 tgtccccttc gcgagtctgc agtcaaccgc aaggcgagac catctcaccc acggagaccc
     1021 aggaaggtgc cgccccaccg ccgccatgcc ggacgtagaa aacccaagat tactgcctcc
     1081 cgcaaactcc tgctgaagag cctgatgctg gccaaggcca aggagtgctg ggagcaagag
     1141 cacgaggcgc gggaggccga gaagagtcgc tacctggccg agcgcatccc cgcgctgcag
     1201 acccgaggcc tgtcgctcag cgccctgcag gacctgtgcc gggacctgca cgccaaggtg
     1261 gaggtggtgg acgaggagag atatgacatc gaggccaaat gcctgcataa cacccgggag
     1321 atcaaggacc tgaagctcaa ggtgctggac ctgcgcggga agttcaagcg cccccccctg
     1381 cggcgcgtcc gcgtctcggc cgacgccatg ctgcgcgccc tgctgggctc caagcacaag
     1441 gtgtccatgg acctgcgcgc caacctcaag tctgtgaaaa aggaggacac ggagaaggag
     1501 cggcccgtgg aggtgggcga ctggaggaag aacgtggagg ccatgtccgg gatggagggc
     1561 cgcaagaaga tgttcgatgc tgccaagtcc ccgacctccc agtagaggca gctggccaaa
     1621 ctgtgctccg ggtgccctgc ctgctccttc ctgcagcccc gcccgccggc ctctcagcat
     1681 acccccctgc actgcagagc gcgccccctc ctcccacgtc tcccttccag cctgagcgcc
     1741 ttccggcggg actgggatta acagacacaa gaggggagga acggcagcgt ctgaagacgg
     1801 cgcctggctg gcgggtgggc tccctggggc tccctggggc tccctgggtc tccggccgct
     1861 gtggggcaac caggcctcga ggaggcatgc accctccact ctgtatgtca agcgcccgtg
     1921 ggcgtcacag cctctccatt aaaaccagt
//
LOCUS       XM_032654381            1042 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus troponin I1, slow skeletal type (TNNI1),
            transcript variant X2, mRNA.
ACCESSION   XM_032654381
VERSION     XM_032654381.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1042
                     /gene="TNNI1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116765125"
     CDS             135..698
                     /gene="TNNI1"
                     /codon_start=1
                     /product="troponin I, slow skeletal muscle isoform X2"
                     /protein_id="XP_032510272.1"
                     /db_xref="GeneID:116765125"
                     /translation="MPDVERKPKITASRKLLLKSLMLAKAKECWEQEHEAREAEKSRY
                     LAERIPALQTRGLSLSALQDLCRDLHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVL
                     DLRGKFKRPPLRRVRVSADAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPVEVGD
                     WRKNVEAMSGMEGRKKMFDAAKSPTSQ"
     misc_feature    177..572
                     /gene="TNNI1"
                     /note="Region: Troponin; pfam00992"
                     /db_xref="CDD:460018"
ORIGIN      
        1 agaaaacaga caggagaact cggaagcttc acatatttaa aaacatcttt cctccaccct
       61 ccagtctgca gtcaaccgca aggcgagacc atctcaccca cggagaccca ggaaggtgcc
      121 gccccaccgc cgccatgccg gacgttgaga gaaaacccaa gattactgcc tcccgcaaac
      181 tcctgctgaa gagcctgatg ctggccaagg ccaaggagtg ctgggagcaa gagcacgagg
      241 cgcgggaggc cgagaagagt cgctacctgg ccgagcgcat ccccgcgctg cagacccgag
      301 gcctgtcgct cagcgccctg caggacctgt gccgggacct gcacgccaag gtggaggtgg
      361 tggacgagga gagatatgac atcgaggcca aatgcctgca taacacccgg gagatcaagg
      421 acctgaagct caaggtgctg gacctgcgcg ggaagttcaa gcgccccccc ctgcggcgcg
      481 tccgcgtctc ggccgacgcc atgctgcgcg ccctgctggg ctccaagcac aaggtgtcca
      541 tggacctgcg cgccaacctc aagtctgtga aaaaggagga cacggagaag gagcggcccg
      601 tggaggtggg cgactggagg aagaacgtgg aggccatgtc cgggatggag ggccgcaaga
      661 agatgttcga tgctgccaag tccccgacct cccagtagag gcagctggcc aaactgtgct
      721 ccgggtgccc tgcctgctcc ttcctgcagc cccgcccgcc ggcctctcag catacccccc
      781 tgcactgcag agcgcgcccc ctcctcccac gtctcccttc cagcctgagc gccttccggc
      841 gggactggga ttaacagaca caagagggga ggaacggcag cgtctgaaga cggcgcctgg
      901 ctggcgggtg ggctccctgg ggctccctgg ggctccctgg gtctccggcc gctgtggggc
      961 aaccaggcct cgaggaggca tgcaccctcc actctgtatg tcaagcgccc gtgggcgtca
     1021 cagcctctcc attaaaacca gt
//
LOCUS       XM_032654392            1654 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 222 (TMEM222),
            transcript variant X1, mRNA.
ACCESSION   XM_032654392
VERSION     XM_032654392.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1654
                     /gene="TMEM222"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765137"
     CDS             16..648
                     /gene="TMEM222"
                     /codon_start=1
                     /product="transmembrane protein 222 isoform X1"
                     /protein_id="XP_032510283.1"
                     /db_xref="GeneID:116765137"
                     /translation="MAEAEGSSPLLLPPSPLPPPPGMAEVEAPTAAETDKKQFGCAGG
                     GVMDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSTGVIRDFAGPYFVSEDNMAFG
                     KPAKYWKLDPAQVYASGPNAWDTAVHDASEEYKHRMHSLCCDNCHSHVALALNLMRYN
                     NSTNWNMVTLCFFCLLYGKYVSIGAFVKTWLPFVLLLGVILSVSLVFNLR"
     misc_feature    202..555
                     /gene="TMEM222"
                     /note="Protein of unknown function (DUF778); Region:
                     DUF778; pfam05608"
                     /db_xref="CDD:428540"
ORIGIN      
        1 cggggcgcgc gcagcatggc ggaagcggaa gggagttcgc cactcctgtt gccgccgtcg
       61 ccgctgccac ccccgcccgg gatggcggaa gtggaggcgc cgacggcggc cgagacggac
      121 aagaagcagt ttggctgtgc tggcggcggc gtcatggacg tggagcggag ccgctttcct
      181 tactgcgtgg tgtggactcc cataccggtg ctcacgtggt ttttccccat cattggccac
      241 atgggcatct gcacatccac aggagtcatt cgggactttg ctggccccta ctttgtgtcg
      301 gaagacaaca tggccttcgg gaagcctgcc aagtactgga agctggaccc tgctcaggta
      361 tatgctagcg ggcccaatgc gtgggacacg gctgtgcacg acgcttctga ggaatacaag
      421 caccgcatgc acagtctctg ctgtgacaac tgccactcac atgtggcctt ggccctgaac
      481 ctgatgcgct acaacaacag caccaactgg aacatggtga ctctctgctt cttctgcctg
      541 ctgtatggga agtacgtcag catcggcgcc ttcgtgaaga cctggctgcc cttcgtcctc
      601 ctcctgggcg tcatcctaag cgtcagcctg gtctttaacc tgcggtgatg gctgccccct
      661 ggccctgggc ccaccaggct cctgaggcgg cagctgccat cacctttcgt tccagattct
      721 ttctcctcgc cccggaaggc agggatgggc ctgctggttt tggcccaggg gtctgggcta
      781 agtggggtag aataagggct gaggatgagc atggcgtgga ggtgtttgca ttttgtgtct
      841 cactggtcgc tcagaagctc cctgccccct ccttcccagg cttgtgactc ccacccttga
      901 ggcacccttt gttcatctgt tggaaaagcc ttagcttccc tctagagctg tgtctgccac
      961 tgcctgctgg gctccctctg cctcagccca gtgcctggtg ggggagggaa ggatatttgg
     1021 acccaccaga caaggcagca cagggaccag agctggattt gaagcccatt ctcctgccag
     1081 gactctgttc ccagggtgga ggtacactaa gaagtctgca taaactcagc caccctgggg
     1141 ccttctccac gggcctctag aatggtccag tagggctgac gggccccctt cagatgtctg
     1201 ccagaagctg cactaggggt agtttgtgcc ccgctcctgg cggccgccag cccgtgcagc
     1261 cccctcttcc cgctctccca gggcctccaa gtacttgggc ccatctcccc cctgcagttt
     1321 gggacctggg ctcccccaac caggctggag agttgagtga cactgacgta tccagagtga
     1381 cccctgcaga tcagagcgat gtaacaaagc ttgtccttgg ccccgggtac aggcctcgca
     1441 ctggtgacgg caccccttgg gtccgagatg tcggggggcc gtcggaacat ccagcgccat
     1501 cagggagctg aatgggagct gtctcctccc acctcccacg gctccccctt ctcttcaagt
     1561 tgtgggacag gcctgtgctg cccccctcac ccctgctcca cggattcctt tgtgcggggc
     1621 tccctgggca ggacaataaa gagttttaac tcca
//
LOCUS       XM_032654402            1645 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 222 (TMEM222),
            transcript variant X2, mRNA.
ACCESSION   XM_032654402
VERSION     XM_032654402.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1645
                     /gene="TMEM222"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765137"
     CDS             16..639
                     /gene="TMEM222"
                     /codon_start=1
                     /product="transmembrane protein 222 isoform X2"
                     /protein_id="XP_032510293.1"
                     /db_xref="GeneID:116765137"
                     /translation="MAEAEGSSPLLLPPSPLPPPPGMAEVEAPTAAETDKKQFGCAGG
                     GVMDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSTGVIRDFAGPYFVSEDNMAFG
                     KPAKYWKLDPAQVYASGPNAWDTAVHDASEEYKHRMHSLCCDNCHSHVALALNLMRYN
                     NSTNWNMVTLCFFCLLYGNIGAFVKTWLPFVLLLGVILSVSLVFNLR"
     misc_feature    202..549
                     /gene="TMEM222"
                     /note="Protein of unknown function (DUF778); Region:
                     DUF778; pfam05608"
                     /db_xref="CDD:428540"
ORIGIN      
        1 cggggcgcgc gcagcatggc ggaagcggaa gggagttcgc cactcctgtt gccgccgtcg
       61 ccgctgccac ccccgcccgg gatggcggaa gtggaggcgc cgacggcggc cgagacggac
      121 aagaagcagt ttggctgtgc tggcggcggc gtcatggacg tggagcggag ccgctttcct
      181 tactgcgtgg tgtggactcc cataccggtg ctcacgtggt ttttccccat cattggccac
      241 atgggcatct gcacatccac aggagtcatt cgggactttg ctggccccta ctttgtgtcg
      301 gaagacaaca tggccttcgg gaagcctgcc aagtactgga agctggaccc tgctcaggta
      361 tatgctagcg ggcccaatgc gtgggacacg gctgtgcacg acgcttctga ggaatacaag
      421 caccgcatgc acagtctctg ctgtgacaac tgccactcac atgtggcctt ggccctgaac
      481 ctgatgcgct acaacaacag caccaactgg aacatggtga ctctctgctt cttctgcctg
      541 ctgtatggga acatcggcgc cttcgtgaag acctggctgc ccttcgtcct cctcctgggc
      601 gtcatcctaa gcgtcagcct ggtctttaac ctgcggtgat ggctgccccc tggccctggg
      661 cccaccaggc tcctgaggcg gcagctgcca tcacctttcg ttccagattc tttctcctcg
      721 ccccggaagg cagggatggg cctgctggtt ttggcccagg ggtctgggct aagtggggta
      781 gaataagggc tgaggatgag catggcgtgg aggtgtttgc attttgtgtc tcactggtcg
      841 ctcagaagct ccctgccccc tccttcccag gcttgtgact cccacccttg aggcaccctt
      901 tgttcatctg ttggaaaagc cttagcttcc ctctagagct gtgtctgcca ctgcctgctg
      961 ggctccctct gcctcagccc agtgcctggt gggggaggga aggatatttg gacccaccag
     1021 acaaggcagc acagggacca gagctggatt tgaagcccat tctcctgcca ggactctgtt
     1081 cccagggtgg aggtacacta agaagtctgc ataaactcag ccaccctggg gccttctcca
     1141 cgggcctcta gaatggtcca gtagggctga cgggccccct tcagatgtct gccagaagct
     1201 gcactagggg tagtttgtgc cccgctcctg gcggccgcca gcccgtgcag ccccctcttc
     1261 ccgctctccc agggcctcca agtacttggg cccatctccc ccctgcagtt tgggacctgg
     1321 gctcccccaa ccaggctgga gagttgagtg acactgacgt atccagagtg acccctgcag
     1381 atcagagcga tgtaacaaag cttgtccttg gccccgggta caggcctcgc actggtgacg
     1441 gcaccccttg ggtccgagat gtcggggggc cgtcggaaca tccagcgcca tcagggagct
     1501 gaatgggagc tgtctcctcc cacctcccac ggctccccct tctcttcaag ttgtgggaca
     1561 ggcctgtgct gcccccctca cccctgctcc acggattcct ttgtgcgggg ctccctgggc
     1621 aggacaataa agagttttaa ctcca
//
LOCUS       XM_032654417            1829 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 3'(2'), 5'-bisphosphate nucleotidase 1
            (BPNT1), mRNA.
ACCESSION   XM_032654417
VERSION     XM_032654417.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1829
                     /gene="BPNT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 5 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765144"
     CDS             167..1093
                     /gene="BPNT1"
                     /codon_start=1
                     /product="3'(2'),5'-bisphosphate nucleotidase 1"
                     /protein_id="XP_032510308.1"
                     /db_xref="GeneID:116765144"
                     /translation="MASSHTVLMRLVASAYSIAQKAGTIVRRVIAEGDLGIVEKTCAT
                     DLQTKADRLVQMSICSSLARKFPKLTIIGEEDLPPEDVDQELIEDGQWEEILKQPCPS
                     QYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGVINQPYYNYQAG
                     PDAVLGRTIWGVLGLGAFGFQLKEVPAGKHIITTTRSHNSQLVTDCVAAMNPDDVLRV
                     GGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNALQYNKEV
                     KHMNSAGVLATLRNYDYYASRVPESVKNVLVP"
     misc_feature    197..1057
                     /gene="BPNT1"
                     /note="Inositol polyphosphate-1-phosphatase, a member of
                     the Mg++ dependent family of inositol monophosphatase-like
                     domains, hydrolyzes the 1' position phosphate from
                     inositol 1,3,4-trisphosphate and inositol
                     1,4-bisphosphate. Members in this group may also...;
                     Region: IPPase; cd01640"
                     /db_xref="CDD:238818"
     misc_feature    order(317..319,386..391,515..532,536..538,749..751,
                     818..829,836..838,872..874,878..880,890..895,902..907)
                     /gene="BPNT1"
                     /note="active site"
                     /db_xref="CDD:238818"
ORIGIN      
        1 tgctcagtag ctgaggtagg tttagtctgc atccactgat gacctatccg cggagggtaa
       61 gcgctgtact ggacgctgcg ggggacctgt tgcttggtaa cgcttttttg gttacccctg
      121 aagtctcttt cgtctgactt ggtgccagtc ttgtcactgg cacatcatgg cttccagtca
      181 cactgtgttg atgcggttgg tggcttcagc atattctatt gctcaaaagg caggaacgat
      241 agtcaggcgt gttattgctg aaggagacct gggtatcgtg gagaagacct gtgcaacaga
      301 cttgcagacc aaggcggacc gattagttca aatgagcata tgctcttctt tggcacggaa
      361 attccccaaa ctaacaatta taggggaaga ggatctgcct cctgaagacg tggatcaaga
      421 gttgattgaa gatggtcagt gggaggagat actgaagcaa ccatgcccat cacagtacag
      481 tgctatcaaa gaggaagacc ttgtggtctg ggttgatcct ctggatggta ccaaggaata
      541 tactgaaggt cttcttgaca atgtaacagt tcttattgga attgcttatg aaggaaaagc
      601 catagcagga gttattaacc agccatatta caactaccag gcaggaccag atgctgtgtt
      661 ggggagaaca atctggggag ttttaggttt aggtgccttc gggtttcagc tgaaagaagt
      721 gcctgccgga aaacacatta tcacaactac ccggtcccat aacagccagt tggttacgga
      781 ctgcgttgca gctatgaacc ctgatgatgt gctgcgggtg ggaggagcag gaaataagat
      841 tatccagcta atcgaaggca aagcctctgc ttatgtattt gcaagtcctg gatgtaagaa
      901 gtgggatacc tgtgctccag aagtcatttt acatgctgtg ggaggcaagt taaccgatat
      961 ccatggaaat gcccttcagt ataacaagga agtgaagcac atgaactcag ctggcgtcct
     1021 ggccacactg aggaattatg actactatgc aagtcgagtt cccgaatctg ttaaaaatgt
     1081 acttgttcct tgaagggaaa tcccgtcgac tcaccaggag aaggacttgc tcctcaaaaa
     1141 ctaattggat ggaatttgag ctctaccttt acttcattca ttgttgatca ccgatttaca
     1201 tttggttact taggagtaga aaattgaatt tttaaacgtc ttgattaatg aatcaaccag
     1261 accaattttg acatctggaa aacttgtaaa gtcagtatat ttcacatttc atttctcctc
     1321 cttttatttg gagcagtgaa agtaaagctt agttccaact ggccatcctg gcgccctgtt
     1381 gaatcagcat tcctgttttg taaaccagat ttctttaggg cacagaacca caagttatta
     1441 cctaaatctc attcttgtct ttcacagtaa tgtaaaacgt tttcctactc ccattctgaa
     1501 tacattaaaa tatcattcta tatgttgatg aaacagattt tggagaaata tttctttata
     1561 ataaattatt taattctagc tctctctctt attcaccagc tttttttgtt tttaagtagt
     1621 tggaaactat gtgttctctg ctgtgggcat tactttatcc ttatggcatc attatgcagt
     1681 ttaactgtgg aaagttaggt aattgctcct attccttcca aaggaagatt ataatgtatg
     1741 ctatcaaaat tattctgaca ttctgcctag gtttttattg tttaggtctc tgtcctgtgc
     1801 ttttaaataa atttctctcg ttgtattaa
//
LOCUS       XM_032654427            1104 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus left-right determination factor 2-like
            (LOC116765150), transcript variant X1, mRNA.
ACCESSION   XM_032654427
VERSION     XM_032654427.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1104
                     /gene="LOC116765150"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins"
                     /db_xref="GeneID:116765150"
     CDS             1..1104
                     /gene="LOC116765150"
                     /codon_start=1
                     /product="left-right determination factor 2-like isoform
                     X1"
                     /protein_id="XP_032510318.1"
                     /db_xref="GeneID:116765150"
                     /translation="MRPLWLCWALWALPLAGPGAALTEERVLGSLLRQLRLSEAPVLD
                     EADVERLIIPAHVRAQYVTLLQRSHGARSRGKRFSQSFREVAGRFLVSEVSSHLLVFD
                     MEQRLPPHSELVQAVLRLFQEPVPKAALRRHERLFPRSDRARITVQWLHVRDDGSNRT
                     SLIDSRLVSIHESGWKALDVTDAVNFWQQLRRPRQSLLLQVSVQREHLGPLASSAHTL
                     VRFASQGPSGAGQREPQLELHTLDLRDYGAQGNCDPKAPATEATRCCRREVYIDLQGM
                     KWAENWVLEPPGFLAYECVGTCQQPPEPLTFRWPFLGPRQCIASETTSLPMIVSIPEG
                     GKPRPQVVSLPNMRVQKCSCASDGAPVPRKLEP"
     misc_feature    <106..609
                     /gene="LOC116765150"
                     /note="TGF-beta propeptide; Region: TGFb_propeptide;
                     cl46657"
                     /db_xref="CDD:480997"
     misc_feature    787..1062
                     /gene="LOC116765150"
                     /note="transforming growth factor beta (TGF-beta) like
                     domain found in left-right determination factor 1
                     (lefty-1), factor 2 (lefty-2) and similar proteins;
                     Region: TGF_beta_LEFTY1_2; cd13758"
                     /db_xref="CDD:381636"
     misc_feature    order(805..813,820..828,832..834,865..867,871..885,
                     946..957,964..966,1033..1047)
                     /gene="LOC116765150"
                     /note="putative homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381636"
ORIGIN      
        1 atgcggcccc tctggctctg ctgggcgctc tgggcgctgc ccctggccgg ccccggggcg
       61 gccctgaccg aggagcgggt cctgggcagc ctgctgcggc agctgcgcct cagcgaggct
      121 cccgtcctgg acgaggccga tgtggagagg ctgatcatcc ctgcccacgt gagggcccag
      181 tacgtgaccc tgctgcagcg cagccacggg gcccgctccc gggggaagag gttcagccag
      241 agcttccgag aggtggccgg caggttcctg gtgtccgagg tctcctcgca cctgctggtg
      301 ttcgacatgg agcagcggct gccgccccac agcgagctgg tgcaggccgt gctgcgcctc
      361 ttccaggagc cggtccccaa ggccgcgctc cgcagacacg agcggctctt cccgcgcagc
      421 gaccgcgccc ggatcaccgt ccagtggctg cacgtccgcg acgacggttc caaccgcacc
      481 tccctcatcg actccaggct ggtgtccatc cacgagagcg gctggaaggc cttggacgtg
      541 acggacgccg tgaacttctg gcagcagctg cgccggcccc ggcagtcgct gctgctgcag
      601 gtgtcggtgc agcgggagca cctgggcccg ctggcctcca gcgcccacac gctggtccgc
      661 ttcgcctcgc aggggccgtc gggcgccggg cagcgggagc cccagctgga gctgcacacc
      721 ctggacctca gggattacgg agctcaggga aactgtgatc ctaaggcacc agcgaccgag
      781 gccacccgct gctgccgccg ggaggtgtac attgacctgc aggggatgaa gtgggctgag
      841 aactgggtcc tggagccccc aggcttcctg gcctatgaat gtgtgggcac ctgccagcag
      901 cccccagagc ccctgacctt caggtggcca tttctggggc cgagacagtg catcgcctca
      961 gagacgacct cgctgcccat gattgtcagc atcccggagg gaggcaagcc caggccccag
     1021 gtggtcagct tgcccaacat gagggtgcag aagtgcagct gtgcctcgga tggggcgcct
     1081 gtaccaagga agctggagcc gtag
//
LOCUS       XM_032654436            1002 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus left-right determination factor 2-like
            (LOC116765150), transcript variant X2, mRNA.
ACCESSION   XM_032654436
VERSION     XM_032654436.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1002
                     /gene="LOC116765150"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:116765150"
     CDS             1..1002
                     /gene="LOC116765150"
                     /codon_start=1
                     /product="left-right determination factor 2-like isoform
                     X2"
                     /protein_id="XP_032510327.1"
                     /db_xref="GeneID:116765150"
                     /translation="MRPLWLCWALWALPLAGPGAALTEERVLGSLLRQLRLSEAPVLD
                     EADVERLIIPAHVRAQYVTLLQRSHGARSRGKRFSQSFREVAGRFLVSEAALRRHERL
                     FPRSDRARITVQWLHVRDDGSNRTSLIDSRLVSIHESGWKALDVTDAVNFWQQLRRPR
                     QSLLLQVSVQREHLGPLASSAHTLVRFASQGPSGAGQREPQLELHTLDLRDYGAQGNC
                     DPKAPATEATRCCRREVYIDLQGMKWAENWVLEPPGFLAYECVGTCQQPPEPLTFRWP
                     FLGPRQCIASETTSLPMIVSIPEGGKPRPQVVSLPNMRVQKCSCASDGAPVPRKLEP"
     misc_feature    <106..507
                     /gene="LOC116765150"
                     /note="TGF-beta propeptide; Region: TGFb_propeptide;
                     cl46657"
                     /db_xref="CDD:480997"
     misc_feature    685..960
                     /gene="LOC116765150"
                     /note="transforming growth factor beta (TGF-beta) like
                     domain found in left-right determination factor 1
                     (lefty-1), factor 2 (lefty-2) and similar proteins;
                     Region: TGF_beta_LEFTY1_2; cd13758"
                     /db_xref="CDD:381636"
     misc_feature    order(703..711,718..726,730..732,763..765,769..783,
                     844..855,862..864,931..945)
                     /gene="LOC116765150"
                     /note="putative homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381636"
ORIGIN      
        1 atgcggcccc tctggctctg ctgggcgctc tgggcgctgc ccctggccgg ccccggggcg
       61 gccctgaccg aggagcgggt cctgggcagc ctgctgcggc agctgcgcct cagcgaggct
      121 cccgtcctgg acgaggccga tgtggagagg ctgatcatcc ctgcccacgt gagggcccag
      181 tacgtgaccc tgctgcagcg cagccacggg gcccgctccc gggggaagag gttcagccag
      241 agcttccgag aggtggccgg caggttcctg gtgtccgagg ccgcgctccg cagacacgag
      301 cggctcttcc cgcgcagcga ccgcgcccgg atcaccgtcc agtggctgca cgtccgcgac
      361 gacggttcca accgcacctc cctcatcgac tccaggctgg tgtccatcca cgagagcggc
      421 tggaaggcct tggacgtgac ggacgccgtg aacttctggc agcagctgcg ccggccccgg
      481 cagtcgctgc tgctgcaggt gtcggtgcag cgggagcacc tgggcccgct ggcctccagc
      541 gcccacacgc tggtccgctt cgcctcgcag gggccgtcgg gcgccgggca gcgggagccc
      601 cagctggagc tgcacaccct ggacctcagg gattacggag ctcagggaaa ctgtgatcct
      661 aaggcaccag cgaccgaggc cacccgctgc tgccgccggg aggtgtacat tgacctgcag
      721 gggatgaagt gggctgagaa ctgggtcctg gagcccccag gcttcctggc ctatgaatgt
      781 gtgggcacct gccagcagcc cccagagccc ctgaccttca ggtggccatt tctggggccg
      841 agacagtgca tcgcctcaga gacgacctcg ctgcccatga ttgtcagcat cccggaggga
      901 ggcaagccca ggccccaggt ggtcagcttg cccaacatga gggtgcagaa gtgcagctgt
      961 gcctcggatg gggcgcctgt accaaggaag ctggagccgt ag
//
LOCUS       XM_032654450            3211 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 76 member
            A (FAM76A), transcript variant X1, mRNA.
ACCESSION   XM_032654450
VERSION     XM_032654450.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3211
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3211
                     /gene="FAM76A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 4 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765162"
     CDS             97..1020
                     /gene="FAM76A"
                     /codon_start=1
                     /product="protein FAM76A"
                     /protein_id="XP_032510341.1"
                     /db_xref="GeneID:116765162"
                     /translation="MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTE
                     YQQESKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCE
                     QCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRASHQEKEQY
                     SRLSGGSHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLALDSPGTDHFVII
                     AQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTE
                     QLQAKNRELLKQAAALSKSKKSEKSGAITSP"
     misc_feature    106..972
                     /gene="FAM76A"
                     /note="FAM76 protein; Region: FAM76; pfam16046"
                     /db_xref="CDD:464993"
ORIGIN      
        1 gcagcccgca gcctgccgcc gccaggttgt gcttcagact gtcagataaa gcagcgggcc
       61 gggccggtag ggttgtgagc acggcccggg ccggacatgg cggcgctcta cgcctgcacc
      121 aagtgccacc agcgcttccc cttcgaggcg ctgtctcagg ggcagcagct gtgcaaggaa
      181 tgtcggattg cacaccctgt tgtgaagtgt acctactgta ggactgagta ccagcaggag
      241 agtaaaacca atacaatatg caagaaatgt gctcagaatg tgcagttgta tggaacgccc
      301 aaaccttgtc agtattgcaa cataattgca gcatttattg gcaacaaatg tcagcgctgc
      361 acaaattcag agaagaagta tggaccacca tattcttgtg aacagtgcaa gcagcagtgt
      421 gcatttgaca ggaaagatga tagaaagaag gtagatggga aattgctatg ctggctgtgc
      481 acactttcat acaaacgagt ccttcagaag accaaagagc agaggaagca cctgagcagt
      541 tcttcccgtg caagccacca ggagaaggag cagtacagtc gactgagtgg tggcagccat
      601 tataacagtc agaaaacact ttctacatct tcaattcaaa atgaaatccc aaagaaaaaa
      661 tccaagtttg agtcgatcac aaccaatgga gatagctttt ccccagacct ggctctggac
      721 tcaccaggca ctgaccattt tgtcatcatt gcccaactga aggaagaagt agccactcta
      781 aagaagatgc tgcatcaaaa ggatcaaatg attttagaga aagagaagaa gatcacagag
      841 ctgaaggctg attttcaata ccaagaatct cagatgaggg ccaaaatgaa ccagatggag
      901 aaaacccaca aagaagttac agaacaattg caggccaaaa accgagagct cctgaagcag
      961 gcagctgcct tgtccaagag caagaagtca gagaagtcag gagctataac ctctccatga
     1021 gagaccacaa ggacgctcct ggcaatagca atggattcct gggttagggt ggcaatgtag
     1081 ctgttctctg ggaattgcaa gctttcttaa gaaatctcta ttttactata gttatccttc
     1141 tttgtgcgat tgcagtgggg ctgagtggaa acacctggtt tgtgctatat tatgactgca
     1201 tgcttgaatg tttggggttt caggctctct ctctctctct ctctctccca ctctctctca
     1261 ctctccctca ctcccctctc tacccccaac cctcctctca gtactactgt ctctctgtct
     1321 gtctctcttt tgttactttt ttatgtgtgt gtggtggtca ctgctcagtg ttatgtgcag
     1381 aatggtttgg ttttttttgt ttggtccagc atggcatcct gccataccca tgagcaaata
     1441 gttggcatta attacatatc actgccaccc tctgaacttt gaaaactgcc accttaagac
     1501 ttggtacagt ggaagagaat ttttctctcc agtaaacctt ttgcttcagg gtatactctt
     1561 gggttttttt ccaggtgtat tatgtacttt gtactatgta tagccagagt tttatttatt
     1621 ttttaaaaaa agaaactttt tcttgataaa ggagtaatgg tagcctagct tgttcttctt
     1681 gtaaaagtaa tgcctcttaa aaaaaagtcc tactctctag cgtttagtaa aagaatcaga
     1741 tcttttcttt cttgttacct tggagtctta aaaactgatt gctaaggtga aacaattcaa
     1801 tatataagta tggagttaag tgccttttgg aggatttctt ggaagaccat gtaagaagat
     1861 acttaaggta gcaaagattt gggcagtctg tctttctaag taaaggcaga aagaagggtt
     1921 gtccaggttg tactggacac ttctctcccc aacccctttc ttgattgttt tacatgactg
     1981 attttaaatt ctcacactgc cacctctttt ttaaaaaacg ccctttactt atatcggttg
     2041 tcatactggg ccattttcag gtaacttttt tttttacatg attcaaaatg ggataatatt
     2101 cagactacag agcattttgg aggttagtat gagctgctca agtatggact gtaagtcctg
     2161 ggagaatgat atcactgtac cttttcccca ctcctcctca cccaccccag cctgtacact
     2221 ccctgccttt aatggaaatg tgttgaaaac aggtgcttct cgaaagcagc ttggccacag
     2281 cctgaactgt gtcctgtttt cccttcttga cccaataggc acatggattc tcttttccag
     2341 gtgagaggat agatttgcat ttctagccgt actctcaggt cctctagatg atgtttgtga
     2401 aaggaactag agatgtgtag tgtgccatga aacagtaaaa ccagctacct tggaatcatt
     2461 aatgcagggg gtggtactag agttagaggt aatcataagg gcagatgaca tttgtacctc
     2521 agtctaccaa aagtgtagca gtaagtttaa cttgctaggc atttcctagg agcaaatgct
     2581 tctaatctgt gagcattctc acaagtggag ccatgcacat aattggacag agatgtggca
     2641 atgagtggct tccttctggt aagaggaaca atggaccatg ttacttatct atcactctag
     2701 tagaggatgt aattttccct tctaagcaag ggaaatggca gtgctaaaca gttttgtaac
     2761 tttttgaatg agaaactttt aggtaaagat aaactgtcag ataatatttt cagctgcatt
     2821 tacattgact atggggaaaa gattgtgaaa aaagttacag tcattttttt tttattttaa
     2881 aggcttgaga aattctgtta catgaagtga caatgtaaaa acacatttag ttttatacta
     2941 aatctttttt taaggtcttg gcatttaata taaagcaaat ccacacattt tctaactttc
     3001 cacaagttcc aaaaagggaa ggaagaaact tcaatcttga aattttggtt tttaaaaatc
     3061 atgacactgt tttaccgtga aattgagtag ctaacttttg gtaacacctt ttgtttattt
     3121 gtatgtttgt aataatggac cttttaaaac acaggaatgt tttggtttgt acagactttg
     3181 aaaaatgtgt gttaataaaa attcatattg a
//
LOCUS       XR_004353159            3417 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 76 member
            A (FAM76A), transcript variant X2, misc_RNA.
ACCESSION   XR_004353159
VERSION     XR_004353159.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3417
                     /gene="FAM76A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116765162"
     misc_RNA        1..3417
                     /gene="FAM76A"
                     /product="family with sequence similarity 76 member A,
                     transcript variant X2"
                     /db_xref="GeneID:116765162"
ORIGIN      
        1 gcagcccgca gcctgccgcc gccaggttgt gcttcagact gtcagataaa gcagcgggcc
       61 gggccggtag ggttgtgagc acggcccggg ccggacatgg cggcgctcta cgcctgcacc
      121 aagtgccacc agcgcttccc cttcgaggcg ctgtctcagg ggcagcagct gtgcaaggaa
      181 tgtcggattg cacaccctgt tgtgaagtgt acctactgta ggactgagta ccagcaggag
      241 agtaaaacca atacaatatg caagaaatgt gctcagaatg tgcagttgta tggaacgccc
      301 aaaccttgtc agtattgcaa cataattgca gcatttattg gcaacaaatg tcagcgctgc
      361 acaaattcag agaagaagta tggaccacca tattcttgtg aacagtgcaa gcagcagtgt
      421 gcatttgaca ggaaagatga tagaaagaag gtagatggga aattgctatg ctggctgtgc
      481 acactttcat acaaacgagt ccttcagaag accaaagagc agaggaagca cctgagcagt
      541 tcttcccgtg caagccacca ggagaaggag cagtacagtc gactgagtgg tggcagccat
      601 tataacagtc agaaaacact ttctacatct tcaattcaaa atgaaatccc aaagaaaaaa
      661 tccaagtttg agtcgatcac aaccaatgga gatagctttt ccccagacct ggctctggac
      721 tcaccaggca ctgaccattt tgtcatcatt gcccaactga aggaagaagt agccactcta
      781 aagaagatgc tgcatcaaaa ggatcaaatg attttagaga aagagaagaa gatgaggaag
      841 tggacccaag aggattaaac gaccaaatta aatgtccgaa tcacacagct gataaatgac
      901 agaacaaagg aatgaaccca aatcttcctg accctactgt gctgtgtttc tactctgcca
      961 gtaaggtgga gattcatggg aagagaccag tattctttcc aatttactac atgactgtca
     1021 gatgaaagca gacccaaatc acagagctga aggctgattt tcaataccaa gaatctcaga
     1081 tgagggccaa aatgaaccag atggagaaaa cccacaaaga agttacagaa caattgcagg
     1141 ccaaaaaccg agagctcctg aagcaggcag ctgccttgtc caagagcaag aagtcagaga
     1201 agtcaggagc tataacctct ccatgagaga ccacaaggac gctcctggca atagcaatgg
     1261 attcctgggt tagggtggca atgtagctgt tctctgggaa ttgcaagctt tcttaagaaa
     1321 tctctatttt actatagtta tccttctttg tgcgattgca gtggggctga gtggaaacac
     1381 ctggtttgtg ctatattatg actgcatgct tgaatgtttg gggtttcagg ctctctctct
     1441 ctctctctct ctcccactct ctctcactct ccctcactcc cctctctacc cccaaccctc
     1501 ctctcagtac tactgtctct ctgtctgtct ctcttttgtt acttttttat gtgtgtgtgg
     1561 tggtcactgc tcagtgttat gtgcagaatg gtttggtttt ttttgtttgg tccagcatgg
     1621 catcctgcca tacccatgag caaatagttg gcattaatta catatcactg ccaccctctg
     1681 aactttgaaa actgccacct taagacttgg tacagtggaa gagaattttt ctctccagta
     1741 aaccttttgc ttcagggtat actcttgggt ttttttccag gtgtattatg tactttgtac
     1801 tatgtatagc cagagtttta tttatttttt aaaaaaagaa actttttctt gataaaggag
     1861 taatggtagc ctagcttgtt cttcttgtaa aagtaatgcc tcttaaaaaa aagtcctact
     1921 ctctagcgtt tagtaaaaga atcagatctt ttctttcttg ttaccttgga gtcttaaaaa
     1981 ctgattgcta aggtgaaaca attcaatata taagtatgga gttaagtgcc ttttggagga
     2041 tttcttggaa gaccatgtaa gaagatactt aaggtagcaa agatttgggc agtctgtctt
     2101 tctaagtaaa ggcagaaaga agggttgtcc aggttgtact ggacacttct ctccccaacc
     2161 cctttcttga ttgttttaca tgactgattt taaattctca cactgccacc tcttttttaa
     2221 aaaacgccct ttacttatat cggttgtcat actgggccat tttcaggtaa cttttttttt
     2281 tacatgattc aaaatgggat aatattcaga ctacagagca ttttggaggt tagtatgagc
     2341 tgctcaagta tggactgtaa gtcctgggag aatgatatca ctgtaccttt tccccactcc
     2401 tcctcaccca ccccagcctg tacactccct gcctttaatg gaaatgtgtt gaaaacaggt
     2461 gcttctcgaa agcagcttgg ccacagcctg aactgtgtcc tgttttccct tcttgaccca
     2521 ataggcacat ggattctctt ttccaggtga gaggatagat ttgcatttct agccgtactc
     2581 tcaggtcctc tagatgatgt ttgtgaaagg aactagagat gtgtagtgtg ccatgaaaca
     2641 gtaaaaccag ctaccttgga atcattaatg cagggggtgg tactagagtt agaggtaatc
     2701 ataagggcag atgacatttg tacctcagtc taccaaaagt gtagcagtaa gtttaacttg
     2761 ctaggcattt cctaggagca aatgcttcta atctgtgagc attctcacaa gtggagccat
     2821 gcacataatt ggacagagat gtggcaatga gtggcttcct tctggtaaga ggaacaatgg
     2881 accatgttac ttatctatca ctctagtaga ggatgtaatt ttcccttcta agcaagggaa
     2941 atggcagtgc taaacagttt tgtaactttt tgaatgagaa acttttaggt aaagataaac
     3001 tgtcagataa tattttcagc tgcatttaca ttgactatgg ggaaaagatt gtgaaaaaag
     3061 ttacagtcat ttttttttta ttttaaaggc ttgagaaatt ctgttacatg aagtgacaat
     3121 gtaaaaacac atttagtttt atactaaatc tttttttaag gtcttggcat ttaatataaa
     3181 gcaaatccac acattttcta actttccaca agttccaaaa agggaaggaa gaaacttcaa
     3241 tcttgaaatt ttggttttta aaaatcatga cactgtttta ccgtgaaatt gagtagctaa
     3301 cttttggtaa caccttttgt ttatttgtat gtttgtaata atggaccttt taaaacacag
     3361 gaatgttttg gtttgtacag actttgaaaa atgtgtgtta ataaaaattc atattga
//
LOCUS       XM_032654465            1155 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diencephalon/mesencephalon homeobox 1
            (DMBX1), transcript variant X1, mRNA.
ACCESSION   XM_032654465
VERSION     XM_032654465.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1155
                     /gene="DMBX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 25% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116765170"
     CDS             1..1155
                     /gene="DMBX1"
                     /codon_start=1
                     /product="diencephalon/mesencephalon homeobox protein 1
                     isoform X1"
                     /protein_id="XP_032510356.1"
                     /db_xref="GeneID:116765170"
                     /translation="MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHAL
                     TLAERLAGCTFQDIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRE
                     RLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKTEAPTPDT
                     QLEADQPPSLPSGDPPAELHLSLSEQSASESAPEDQPDREEEPRAGAADPKTEKSPGA
                     ESKGLGCKRGSPKSDSPGSLALAPAAPGGGLLGPSHSYSSSPLSLFRLQEQFRQHMAA
                     TNNLVHYSSFEVGGPAPAAAAAAAAAAVPYLGVNMAPLGSLHCQSYYQSLSAAAAAHQ
                     GVWGSPLLPAPPAGLAPASAALNSKTTSIENLRLRAKQHAASLGLDTLPN"
     misc_feature    214..384
                     /gene="DMBX1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    424..>738
                     /gene="DMBX1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
ORIGIN      
        1 atgcagcact acggggtgaa cgggtactcg ttgcacgcca tgaactcgct cagcgccatg
       61 tacaacctgc accagcaggc ggcccagcag gcccagcatg cccccgacta ccggccctcg
      121 gtgcacgcgc ttaccctggc cgagcgcctg gccggctgta catttcaaga catcatcttg
      181 gaggcccgct atggctccca gcaccgcaaa cagcgtcgca gccgcacggc gttcacggct
      241 cagcagctcg aggccctgga aaagaccttc cagaagactc actacccgga tgtggtgatg
      301 cgtgagaggc tggccatgtg caccaaccta cctgaggccc gggtacaggt gtggttcaag
      361 aaccgcaggg ccaagttccg gaagaagcag cgcagcctgc agaaagagca gctccagaag
      421 cagaaggagg ctgagggctc ccacggggaa ggaaagaccg aggccccgac tccagacacc
      481 cagctggagg ccgaccagcc ccccagcctg cccagcggcg acccccctgc tgagcttcac
      541 ctgagcctat ccgagcagtc ggccagtgag tcagcccccg aagaccagcc agaccgggag
      601 gaagagcccc gggcaggggc tgcggatccc aaaactgaga agagccctgg ggctgagagc
      661 aaggggctgg gctgcaagag gggcagcccc aagtcagatt ccccgggcag cctggccctg
      721 gcccctgcag cccccggggg cggcctcctg ggcccctccc actcttactc ctcatccccg
      781 ctgagcctct tccgtctgca ggagcaattc cgccagcaca tggccgccac caacaacctg
      841 gtgcactact cttccttcga agtggggggc ccggcccctg ctgctgctgc ggctgccgcc
      901 gccgccgccg tgccctacct gggcgtcaac atggcccctc tgggctcact gcactgccag
      961 tcctactacc agtcgctgtc agcggccgct gctgcccacc agggcgtatg ggggtctcca
     1021 ctgctgcccg caccccccgc aggcctggca cctgcctcgg ctgccctgaa cagtaaaacc
     1081 acgagcatcg agaacctgcg gcttcgggcc aagcagcacg cggcgtccct gggactcgat
     1141 acgctgccca actga
//
LOCUS       XM_032654476            1149 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diencephalon/mesencephalon homeobox 1
            (DMBX1), transcript variant X2, mRNA.
ACCESSION   XM_032654476
VERSION     XM_032654476.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1149
                     /gene="DMBX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 25%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116765170"
     CDS             10..1149
                     /gene="DMBX1"
                     /codon_start=1
                     /product="diencephalon/mesencephalon homeobox protein 1
                     isoform X2"
                     /protein_id="XP_032510367.1"
                     /db_xref="GeneID:116765170"
                     /translation="MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHAL
                     TLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMC
                     TNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKTEAPTPDTQLEAD
                     QPPSLPSGDPPAELHLSLSEQSASESAPEDQPDREEEPRAGAADPKTEKSPGAESKGL
                     GCKRGSPKSDSPGSLALAPAAPGGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLV
                     HYSSFEVGGPAPAAAAAAAAAAVPYLGVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGS
                     PLLPAPPAGLAPASAALNSKTTSIENLRLRAKQHAASLGLDTLPN"
     misc_feature    208..378
                     /gene="DMBX1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 catgccgcga tgcagcacta cggggtgaac gggtactcgt tgcacgccat gaactcgctc
       61 agcgccatgt acaacctgca ccagcaggcg gcccagcagg cccagcatgc ccccgactac
      121 cggccctcgg tgcacgcgct taccctggcc gagcgcctgg ctgacatcat cttggaggcc
      181 cgctatggct cccagcaccg caaacagcgt cgcagccgca cggcgttcac ggctcagcag
      241 ctcgaggccc tggaaaagac cttccagaag actcactacc cggatgtggt gatgcgtgag
      301 aggctggcca tgtgcaccaa cctacctgag gcccgggtac aggtgtggtt caagaaccgc
      361 agggccaagt tccggaagaa gcagcgcagc ctgcagaaag agcagctcca gaagcagaag
      421 gaggctgagg gctcccacgg ggaaggaaag accgaggccc cgactccaga cacccagctg
      481 gaggccgacc agccccccag cctgcccagc ggcgaccccc ctgctgagct tcacctgagc
      541 ctatccgagc agtcggccag tgagtcagcc cccgaagacc agccagaccg ggaggaagag
      601 ccccgggcag gggctgcgga tcccaaaact gagaagagcc ctggggctga gagcaagggg
      661 ctgggctgca agaggggcag ccccaagtca gattccccgg gcagcctggc cctggcccct
      721 gcagcccccg ggggcggcct cctgggcccc tcccactctt actcctcatc cccgctgagc
      781 ctcttccgtc tgcaggagca attccgccag cacatggccg ccaccaacaa cctggtgcac
      841 tactcttcct tcgaagtggg gggcccggcc cctgctgctg ctgcggctgc cgccgccgcc
      901 gccgtgccct acctgggcgt caacatggcc cctctgggct cactgcactg ccagtcctac
      961 taccagtcgc tgtcagcggc cgctgctgcc caccagggcg tatgggggtc tccactgctg
     1021 cccgcacccc ccgcaggcct ggcacctgcc tcggctgccc tgaacagtaa aaccacgagc
     1081 atcgagaacc tgcggcttcg ggccaagcag cacgcggcgt ccctgggact cgatacgctg
     1141 cccaactga
//
LOCUS       XM_032654490            1763 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TATA-box binding protein associated
            factor 13 (TAF13), mRNA.
ACCESSION   XM_032654490
VERSION     XM_032654490.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1763
                     /gene="TAF13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765175"
     CDS             50..424
                     /gene="TAF13"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     13"
                     /protein_id="XP_032510381.1"
                     /db_xref="GeneID:116765175"
                     /translation="MADEEEDPAFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFG
                     DDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKD
                     LLTMNEELKRARKAFDEANYGS"
     misc_feature    137..406
                     /gene="TAF13"
                     /note="Transcription initiation factor IID, 18kD subunit;
                     Region: TFIID-18kDa; pfam02269"
                     /db_xref="CDD:190265"
     misc_feature    order(143..145,152..157,161..184,194..199,203..208,
                     215..220,224..259,266..268)
                     /gene="TAF13"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467023"
ORIGIN      
        1 acccgctcca tgggaggcgg gcgcgccctg gaggtggctg gctgccggga tggcagatga
       61 agaagaagac cccgcgtttg aggaagaaaa tgaagaaatt ggaggaggtg cagaaggtgg
      121 acagggtaaa agaaagagac ttttttctaa agaattacgg tgtatgatgt atgggtttgg
      181 ggatgaccag aatccttata ctgagtcagt agatattctt gaagaccttg tcatagagtt
      241 catcactgaa atgactcaca aggcaatgtc aattggaaga caaggtcggg tacaagttga
      301 agatatcgtc ttcttgattc gaaaggaccc aagaaagttt gctagggtta aagacttgct
      361 tactatgaat gaagaattga aacgagctag aaaagcattt gatgaagcaa actatggatc
      421 ttgacacctt tggtactttc tgaaggttca ttattttctg gggaaaccat atttaataac
      481 tatattttcc acagtaaggt tctgatatct agccatgtga atgaaagata gagaaccaca
      541 acgttttcag tctttattca tgtcttcaat tttagagtga tatttgagcc tttaattgcc
      601 tgccgttata ttactatact ttgaattact tactggattt taatgaccac atgtaagtca
      661 aagtaccttg caaaccattc agttccttct gatttcgtgc cattgtaggc tttactgtgg
      721 ctgtttaata tgtgaaatct caatggtacc tttgatagct aagacatgtg tttgatgttt
      781 ctaaagtttt tagattacag tagtctaagt tattaaaaga tagtgaactg gtttgtgttt
      841 cttttaagga gaaaatgata gaaaatacag cctttttaag agtgtttgtc ttaagataat
      901 ttgttttaat actcttttct ttagataaca agtgattttt tgagaaacta aaagtttcct
      961 atgaattctt ctgtgttgaa agacctattt gatttaaaat cttttgggct gggcttccct
     1021 ggtggcacag tggttgagag tccgcctgcc gatggggggg acacgggttt gtgtcccggt
     1081 ccgggaggat tctgcgtgcc gcggagcagc tgggcccgtg agccgtggcc gctgggcctg
     1141 cccgtccgga gcctgtgctc cgccacggta gaggccacag cagtgagagg cccgcgtacc
     1201 gcaaaaaaaa aaaatctttg ggtcttatac tgtttgtcag gttttaagag aactcatttc
     1261 cccaggtcaa attaaagctt ctaaatataa gtgttttcag tagcaggaat ggcattgctg
     1321 aaaagctgat ggtaggataa gcatttgggg tagtgtttta ttaacatatt tgttagtact
     1381 tgttcattgt ggaaatgtgt acttgactaa gaccacgtgt ggctatggaa accacttttg
     1441 tagttcagca tatacaggtt ttgtgtgtat ttagcttatt gtattattct ttcacttagc
     1501 ttaaagtaag gatttaaaat tgcatttaag gggatcattg gatattactg tttgtgaaac
     1561 tgaatgtttt atatgctgct tataaacatt atgaatcagt acttaggaaa attttacttt
     1621 actttcttaa cctatcaata taaggaataa actatgaaaa attaaaaaga ttaatacttg
     1681 aatttgacta tgtgatttat cagcttttct ccccaatgta attctagctg cttaatgtca
     1741 ctaaaaactt tttttccatg tta
//
LOCUS       XM_032654502            2355 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial E3 ubiquitin protein ligase
            1 (MUL1), mRNA.
ACCESSION   XM_032654502
VERSION     XM_032654502.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2355
                     /gene="MUL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 10 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765181"
     CDS             139..1197
                     /gene="MUL1"
                     /codon_start=1
                     /product="mitochondrial ubiquitin ligase activator of NFKB
                     1"
                     /protein_id="XP_032510393.1"
                     /db_xref="GeneID:116765181"
                     /translation="MESGGRPSLGQFILLGTSSVVTAVLYSLYRQKAQVAQELKGAKR
                     IHLGEDLKSILSEAPGKCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMV
                     WNRTTRLWNDCSKIIHQRTNVVPFDLVPHEDGMDVAVRVLKPLDSLDLGLETVYEKFH
                     PSVQSFTDVIGHYISGEQPKGVQETEEMLKVGAALTGVGELVLDSSCIRLQPPKQGMQ
                     YYLSSQDFDSLLQRQESSVRLWKVLTLVFGFATCATLFFILRKQYVQRRERLRLQQME
                     EAFREHEAQLLSRANPEDRESLKNACVMCLSSFRSCVFLECGHVCSCAECYHALPEPK
                     RCPICRQAITRVIPLYNS"
     misc_feature    427..897
                     /gene="MUL1"
                     /note="E3 Ubiquitin ligase; Region: GIDE; pfam12483"
                     /db_xref="CDD:403620"
     misc_feature    1033..1188
                     /gene="MUL1"
                     /note="Modified RING finger, HC subclass (C3HC5-type),
                     found in mitochondrial-anchored protein ligase (MAPL) and
                     similar proteins; Region: mRING-HC-C3HC5_MAPL; cd16648"
                     /db_xref="CDD:438310"
ORIGIN      
        1 tgcgcgtttc cgggagagac agtgctgggg gtgcggttcc gggtgaaggg aggtggcgcg
       61 aggcggaggg cggaggtcgc gtgtcgtggg gcctgacctc ggcggcgtcc cagtccgcgc
      121 ccagggctcg gcgcggccat ggagagcgga gggcggccct cgctgggcca gttcatcctc
      181 ctgggcacca gctctgtcgt caccgctgtc ctgtactctt tgtaccggca gaaggcccag
      241 gtcgcccaag agctcaaggg agctaaaaga atccacttgg gtgaagactt aaagagtatt
      301 ctttcagaag ctccaggaaa atgtgtgcct tacgctgtta ttgaaggagc cgttcggtct
      361 gttaaagaaa cgcttaacag ccagtttgta gaaaattgca agggggtgat ccagcggctg
      421 acgcttcagg agcacaagat ggtgtggaac cggacaactc gcctctggaa cgactgttcc
      481 aagatcattc accagaggac caacgtggtg ccctttgacc tggtgcccca cgaggatggc
      541 atggatgtgg ccgtgcgggt gctgaagccc ctggactcgc tggatctggg cctggagacg
      601 gtgtacgaga agttccaccc ctccgtccag tccttcacgg acgtcatcgg ccactacatc
      661 agtggggagc agcccaaggg cgtccaggag accgaggaga tgctgaaggt gggggccgcc
      721 ctcacggggg tgggcgagct ggtcctggac agcagctgca tccgtctgca gccccccaag
      781 cagggcatgc agtactacct gagcagccag gacttcgaca gcctgctgca gaggcaggag
      841 tccagcgtca ggctctggaa ggtcctgacg ctggtgttcg gctttgccac gtgcgctacc
      901 ctcttcttca tcctccggaa gcagtatgtg cagcgtcgag agcgactgcg cctccagcag
      961 atggaggagg cgttccggga gcacgaggcc cagctgctga gccgagccaa tcccgaggac
     1021 cgggagagtc tgaagaacgc ctgcgtcatg tgcctgagca gcttccggtc ttgcgtcttc
     1081 ctggagtgcg ggcacgtgtg ttcctgcgcc gagtgctacc acgccttgcc ggagcccaag
     1141 aggtgcccca tctgcaggca ggcgatcacc cgggtgattc ccttgtacaa cagctaatgg
     1201 tctcgaggcc ccacagtgag acccccccgc cccgcttcag ggctgtttat ctccaggcct
     1261 ttcgaagagc agtggtgggc ggctgtcatc tcacagcccc agcagcaggg ggcggccttt
     1321 ccaatgtgca ggggaccttt tccggcactg agcacagact cacagctgca ccctggggca
     1381 ggcgccgtgg caccgcgtcc cttccctgga ggccctgagc gtgcgtggct gaggacagct
     1441 caccgctcaa gtgccaaagt cagtggcctc cagcttttct gttctggtgt cttctcgtcc
     1501 tttctggtga ggtgtcggtc cctgtggact tgagccttga atgactctgc cagagcgggg
     1561 gcaaagttgc cttgcggagc cgcttctgaa gagactgcgc agtctccttc ccccttgctt
     1621 acagcccgga agaaagttgt caggctggac gcgtcactcg agtccctttc cctcacgtgc
     1681 tggcctccta cacgtgcgca cacgtgtgtc aggacaaaag gaagtgaaat cctgcacctg
     1741 ccctctaaca gggcgggact ctggtcagag aatggagaga ggtcatttgc gggggcactt
     1801 ggaccggtgc ccattcagtg atccccgtgg cagtgaggat ggggccgctt agctgcagcc
     1861 ctgctggggc caccacggac ctaacgagag ggccaccggc gcacgcgtcc gccctggctt
     1921 ggaactcccg aggcctgagc gggctgaggg ctctggtttt cccagaggaa gcagtaaggg
     1981 cactgctgcc ccagcctcgg gctttcccag ctcctctcca aggctggccc cacggagaag
     2041 tagcagccgg catcttgagc gcacccctgg aaagttcaca tcccgtgggt gtaatcacac
     2101 cgcccttctc acaggcctgc tcacccctca gctgtcccgc tcgagtctgt gagtgtggag
     2161 aagtggggaa gcctctctca ccacctctga gtgtccaagg gcacgtgcac ggcgctttcc
     2221 tctctccctt ccctggctta gaatatccat gcccgatcct cctttgtgcg ggggagatgg
     2281 gggtgctctc agggggctga cgccggttct ctgtgcgtcc agcatggacg gcacaaataa
     2341 aagacgttat agcca
//
LOCUS       XM_032654509            1326 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nescient helix-loop-helix 2 (NHLH2),
            mRNA.
ACCESSION   XM_032654509
VERSION     XM_032654509.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1326
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1326
                     /gene="NHLH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 32%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116765183"
     CDS             864..1271
                     /gene="NHLH2"
                     /codon_start=1
                     /product="helix-loop-helix protein 2"
                     /protein_id="XP_032510400.1"
                     /db_xref="GeneID:116765183"
                     /translation="MMLSPDQAADSDHPSSAPSDPESLGGADAKVLGSVSDLEPVEEA
                     EGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRK
                     LLPTLPPDKKLSKIEILRLAICYISYLNHVLDV"
     misc_feature    1050..1268
                     /gene="NHLH2"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     helix-loop-helix protein 2 (HEN-2) and similar proteins;
                     Region: bHLH_TS_HEN2; cd19702"
                     /db_xref="CDD:381545"
     misc_feature    order(1098..1100,1110..1112,1116..1124,1128..1130,
                     1143..1145,1197..1208)
                     /gene="NHLH2"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381545"
     misc_feature    order(1137..1142,1149..1154,1158..1163,1209..1211,
                     1218..1220,1230..1232,1236..1241,1251..1253,1257..1262)
                     /gene="NHLH2"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381545"
ORIGIN      
        1 ctcccaccct cccgcatctt tctccgcttc cctgtcactg ttactccggg agacgttcac
       61 ttttcaccaa cctttctcca aacatctcca agccactgac tatatatatt ttgctacaag
      121 gtaaagaaag gagggggtgg gggtgggaga tgtaaccaag ccttgaaaga ctttgaaact
      181 ggaaatatgt gtctgtttat acaacataca agtaaatgag ggaagaggaa gaggcaagct
      241 aagccccgag ttacagtatt gtgttcctgg gaactgggga gacatcagct gaacaaagcc
      301 ttatctcaaa aaaaaaaaaa aaagagagaa ttacttctga gcaagattgc atctctgcct
      361 tgcacttccc agtttctgct cagtagtatt aagggaagga aaggcgttct acaggagcgg
      421 aatcttatct taaccatctt tcttattgat tcttccgcta ttagaaagtg gaggaatcag
      481 ccctttgatg tgattgtgtt tatctctgca tctcttttgt tatttataga gacctagaag
      541 aggaaaagag gcacgagact tttcaacaca tcgtttaaga aaaatcaaca acgaatttcc
      601 cgaaacgttt gagaacaatt aaaaggaaaa gccgtttttg atctatcaac taagtgaaca
      661 atcattcata tcgtccacat cctgagatat tatcgtccct cgctgtggac accagcgaga
      721 tgacagctgc tttttcattt ttgaatgtaa taaatatttg ctgcttctaa tatatttcgg
      781 aatttctccc tgctattccc tgggatttta actctaaaag attggagaaa agattatcga
      841 aaaggctttt acaagcctcc aaaatgatgc tgagtccaga ccaagccgcc gactcggacc
      901 accccagttc ggcgccctcg gacccggagt cgctgggtgg cgcggacgcc aaggtgctgg
      961 gcagcgtgtc ggacctggag ccggtggagg aggccgaagg cgacggcaag ggcggcagcc
     1021 gggccgcgct ctacccgcac ccgcagcagc tgagccgcga ggagaagcgc cgccgccggc
     1081 gagccacggc caagtaccgc tcggcccacg ccacccgcga gcgcatccgc gtggaggcct
     1141 tcaacctggc cttcgccgag ctccgcaaac tgctgcccac gctgcccccg gacaagaagc
     1201 tgtccaagat cgagatcctg cgcctggcca tctgctacat ctcctatctc aaccacgtcc
     1261 tggatgtgta gggccggggt cgcggcgcgg ggccgcctgg ccgggagtgg gtgaaacgcg
     1321 gccaac
//
LOCUS       XM_032654524            3401 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kazrin, periplakin interacting protein
            (KAZN), transcript variant X1, mRNA.
ACCESSION   XM_032654524
VERSION     XM_032654524.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3401
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3401
                     /gene="KAZN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 82% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116765188"
     CDS             16..2346
                     /gene="KAZN"
                     /codon_start=1
                     /product="kazrin isoform X1"
                     /protein_id="XP_032510415.1"
                     /db_xref="GeneID:116765188"
                     /translation="MMEDNKQLALRIDGAVQSASQEMTNLRAELTATNRRLAELSGGG
                     GGPGPGPGAAASASAAADLAAANMENHQHSAQALLREEVSRLQEEVHLLRQMKEMLMK
                     DLEESQGGKSSEVLAATELRVQLAQKGQELARAREALQAMKADRKRLKGEKTDLVSQM
                     QQLYATLESREEQLRDFIRNYEQHRKESEDAVKALAKEKDLLEREKWELRRQAKEATD
                     HATALRSQLDLKDNRMKELEAELAMAKQSLATLTKDVPKRHSLAMPGETVLNGNQEWV
                     VQADLPLTAAIRQSQQTLYHSHPPHPGDRQAVRVSPCHSRQPSVISDASAAEGDRSST
                     PSDINSPRHRTHSLCNGDSPGPVQKNLHNPIVQSLEDLEDQKRKKKKEKMGFGSISRV
                     FARGKQRKSLDPGLFDDSDSQCSPTRQSLSLSEGEEQTDRLQQVELVRTTPMSHWKAG
                     TVQAWLEVVMAMPMYVKACAENVKSGKVLLSLSDEDLELGLGVCSSLHRRKLRLAIED
                     YRDAEAGRSLSKAADLDHHWVAKAWLNDIGLSQYSQAFQNHLVDGRMLNSLMKRDLEK
                     HLNVSKKFHQISILLGIELLYQVNFSREALQERRARCETQNIDPVVWTNQRVLKWVRD
                     IDLKEYADNLTNSGVHGAVLVLEPTFNAEAMATALGIPSGKHILRRHLAEEMSAIFHP
                     ANSTGIREAERFGTPPGRASSITRAGKEENSGGIKYKAGRLPLGKIGRSFSSKDPDFH
                     DDYGSLQNEDCGDDDSQGRPEQCRLEGYNGLEVTNV"
     misc_feature    <46..>801
                     /gene="KAZN"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    1345..1554
                     /gene="KAZN"
                     /note="SAM domain of kazrin proteins repeat 1; Region:
                     SAM_kazrin_repeat1; cd09564"
                     /db_xref="CDD:188963"
     misc_feature    1582..1776
                     /gene="KAZN"
                     /note="SAM domain of kazrin proteins repeat 2; Region:
                     SAM_kazrin_repeat2; cd09567"
                     /db_xref="CDD:188966"
     misc_feature    1840..2055
                     /gene="KAZN"
                     /note="SAM domain of kazrin proteins repeat 3; Region:
                     SAM_kazrin_repeat3; cd09570"
                     /db_xref="CDD:188969"
ORIGIN      
        1 gccaaaatcc tgagcatgat ggaagacaat aagcagctcg cgctccgcat cgatggggcg
       61 gtccagtcgg ccagccagga gatgaccaac ctgcgagccg aactcacggc caccaaccgg
      121 agactggcgg aactgagcgg cggcggcggc ggccccggcc cgggcccggg agcagcggcc
      181 agcgcctcgg cggcggcgga cttggcggcg gcgaacatgg agaaccacca gcacagcgcg
      241 caagcactgc tgcgggagga agtgtcccgg ctccaggagg aagtccacct tctccggcag
      301 atgaaggaga tgctgatgaa ggacctggag gagtcgcagg gcggcaagtc ctccgaggtc
      361 ctcgcggcca ccgagctcag ggtccagctg gcccagaagg ggcaggagct agccagagcc
      421 agagaagcgt tgcaggcgat gaaagccgac cgaaagcgcc taaagggtga aaagacggac
      481 ctggtgagcc agatgcagca gctgtatgcc acgctggaga gccgcgagga gcagctgcgc
      541 gatttcatcc gcaactacga gcagcaccgc aaggagagcg aggacgctgt caaagccctg
      601 gccaaggaga aggacctgct ggagcgcgag aagtgggagc tgcggcgcca agccaaggag
      661 gccacggacc acgccacggc actgcgctcc cagctggacc tcaaggataa ccgcatgaag
      721 gagctggagg cggagctggc catggccaag cagtccttag ccacgctgac caaggatgtc
      781 cccaagcggc attcactcgc catgccgggc gagacggtgc ttaatggcaa ccaggagtgg
      841 gtggtgcagg cggacctccc actgaccgca gccatccggc agagccagca gactctctac
      901 cactcacacc ccccccaccc tggggaccgg caagcggtca gggtgagccc ctgccactcc
      961 cggcagccct ccgtcatctc cgacgcatct gccgccgaag gcgaccggtc gtccacgcca
     1021 agcgacatca actcccctcg acaccggacg cactccctct gcaacggcga cagtcccggc
     1081 ccagttcaga agaacctgca caaccccatt gtacagtcac tagaggatct tgaagaccaa
     1141 aaacggaaaa agaagaaaga gaagatggga ttcggctcca tctcgcgtgt cttcgccaga
     1201 gggaagcagc ggaagtccct cgaccccggc ctctttgatg actcggacag ccagtgcagc
     1261 cccacgcgac agagcctcag cctgtcggag ggcgaggagc agacagaccg gctgcagcag
     1321 gtggagctgg tcaggaccac gcccatgtcg cactggaagg ccggcaccgt ccaggcctgg
     1381 ctggaggtgg tcatggccat gcccatgtac gtcaaggcct gtgcggagaa cgtcaagagt
     1441 gggaaggtgt tgctgagcct gagtgacgag gacctagagc tgggcctggg tgtgtgcagc
     1501 tccctgcacc ggcgcaagct ccggctggcc attgaggact accgcgacgc cgaggcgggc
     1561 aggagcctgt ccaaagccgc tgacctggac catcactggg tggccaaggc ctggctgaat
     1621 gacatcggcc tgtcccagta ctcccaggcc ttccaaaacc acctggtcga tgggcggatg
     1681 ctgaactccc tgatgaagcg ggacctggag aagcacctga atgtgtccaa gaagttccac
     1741 cagatcagca tccttctggg aatcgagctg ctgtaccaag tgaacttcag cagggaggcc
     1801 ctccaggagc gccgggctcg ctgcgagacg cagaacatag accccgtggt gtggaccaac
     1861 cagcgggtgc tcaagtgggt gcgagacatt gacctgaagg agtacgcaga caacctgacc
     1921 aacagtggtg tccacggtgc cgtgctggtg ctggaaccca cgttcaacgc tgaggccatg
     1981 gccacggccc tgggcatccc cagcgggaag cacattctcc ggaggcacct ggcggaggag
     2041 atgagtgcca tcttccaccc ggccaactcc acaggcatcc gggaggctga gcgattcgga
     2101 acgcccccgg ggagggcctc cagcatcacc cgggcgggga aggaggagaa cagcggtggg
     2161 atcaagtaca aggctggccg gctgcccctg ggaaagatag gaaggagctt cagcagcaaa
     2221 gaccccgatt tccacgatga ctatggctct cttcaaaacg aagattgcgg agatgatgac
     2281 tcgcagggca ggcccgagca gtgccgtctg gagggctaca atggcctgga ggtcaccaac
     2341 gtgtaaggag ccgatgctcc accagaccca acacagagag acccggggat gaaggacagc
     2401 cagggactgt cgctgttgta catagtgatc tcggcctgag ggtgctcccc tagtcccggg
     2461 aaatcccagt agactgctgt gactgcggat gggaaccctg gggaacgagg gggcaccagc
     2521 ctgcctgact tgagcgggct gtggacttcc gtgctcactg gagggagact ggcccagagg
     2581 gcccgtcagg gtgcccagca cctctgtcat caaggctcta cctcggagag actcagccac
     2641 tgagcagttc aagtggtccc gggagccttg aaatgagcca ccaggatgga aggaggtaca
     2701 gggttcccca aaacaccctc ccaggaggaa caggtgggac tccagccaga cacgcagagc
     2761 ccggcagtga cagcaccagg agctagcaaa gctggaggct gaccggtcac cacggggacc
     2821 cttctggcca gcctggcgga ggtctcagct ccagcatcca tgccccccat gaccaataac
     2881 ttggcttctg acttgggtca ctgaatctct cttgggagaa ggcacaacgg gaaggtcatt
     2941 cccatcctaa aagccgtgtg tcacatccgg gtggacatgt taaagggcta cttgctccct
     3001 cctcccggga gtggctgtcc tgggtggagg caggtgacat ccctgcgggg gtggggctga
     3061 gcagtgacgt tgccaggaaa tgcagatatc tggtcatcag gatgaaggat atcgtgtcga
     3121 taggatcggg gttgactgag ttaggtccgt gacaactgta ccaagtgtga cagtgggttt
     3181 gggactggga acagggaaac gcttgtcatc gttaacccag caaaccttgt tgtgacgtct
     3241 gtcacctgac acacaggtgt gcttgccagt gtcctaattg agctgaatct cacaggtcgc
     3301 taaggtggta cagaggatcc ccagccctct tcttgactct actactgttt tgctgtgtgg
     3361 cttcttccca gtggcctcac ctctctgtgc ctcaatgtct t
//
LOCUS       XM_032654533            3626 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kazrin, periplakin interacting protein
            (KAZN), transcript variant X2, mRNA.
ACCESSION   XM_032654533
VERSION     XM_032654533.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3626
                     /gene="KAZN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 6 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765188"
     CDS             1..1248
                     /gene="KAZN"
                     /codon_start=1
                     /product="kazrin isoform X2"
                     /protein_id="XP_032510424.1"
                     /db_xref="GeneID:116765188"
                     /translation="MRAADSGTWERVRQLAAQGEPAPSCGAGAGPARPPGPAACEPGA
                     DAAGPGDRPRAGAPSVRADGDCSQPALLREEVSRLQEEVHLLRQMKEMLMKDLEESQG
                     GKSSEVLAATELRVQLAQKGQELARAREALQAMKADRKRLKGEKTDLVSQMQQLYATL
                     ESREEQLRDFIRNYEQHRKESEDAVKALAKEKDLLEREKWELRRQAKEATDHATALRS
                     QLDLKDNRMKELEAELAMAKQSLATLTKDVPKRHSLAMPGETVLNGNQEWVVQADLPL
                     TAAIRQSQQTLYHSHPPHPGDRQAVRVSPCHSRQPSVISDASAAEGDRSSTPSDINSP
                     RHRTHSLCNGDSPGPVQKNLHNPIVQSLEDLEDQKRKKKKEKMGFGSISRVFARGKQR
                     KSLDPGLFDGTAPDYYIEEDADW"
     misc_feature    <214..>765
                     /gene="KAZN"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 atgcgggcgg ccgactctgg cacctgggag cgcgtccgcc agctcgcggc tcagggcgag
       61 ccggcgcctt cctgcggggc gggggctggg cctgcgcgcc ccccgggacc ggcagcctgc
      121 gagccgggtg cggacgcggc ggggcccggc gatcggcccc gcgccggggc gccctccgtt
      181 cgagcggatg gcgactgcag ccagccggca ctgctgcggg aggaagtgtc ccggctccag
      241 gaggaagtcc accttctccg gcagatgaag gagatgctga tgaaggacct ggaggagtcg
      301 cagggcggca agtcctccga ggtcctcgcg gccaccgagc tcagggtcca gctggcccag
      361 aaggggcagg agctagccag agccagagaa gcgttgcagg cgatgaaagc cgaccgaaag
      421 cgcctaaagg gtgaaaagac ggacctggtg agccagatgc agcagctgta tgccacgctg
      481 gagagccgcg aggagcagct gcgcgatttc atccgcaact acgagcagca ccgcaaggag
      541 agcgaggacg ctgtcaaagc cctggccaag gagaaggacc tgctggagcg cgagaagtgg
      601 gagctgcggc gccaagccaa ggaggccacg gaccacgcca cggcactgcg ctcccagctg
      661 gacctcaagg ataaccgcat gaaggagctg gaggcggagc tggccatggc caagcagtcc
      721 ttagccacgc tgaccaagga tgtccccaag cggcattcac tcgccatgcc gggcgagacg
      781 gtgcttaatg gcaaccagga gtgggtggtg caggcggacc tcccactgac cgcagccatc
      841 cggcagagcc agcagactct ctaccactca cacccccccc accctgggga ccggcaagcg
      901 gtcagggtga gcccctgcca ctcccggcag ccctccgtca tctccgacgc atctgccgcc
      961 gaaggcgacc ggtcgtccac gccaagcgac atcaactccc ctcgacaccg gacgcactcc
     1021 ctctgcaacg gcgacagtcc cggcccagtt cagaagaacc tgcacaaccc cattgtacag
     1081 tcactagagg atcttgaaga ccaaaaacgg aaaaagaaga aagagaagat gggattcggc
     1141 tccatctcgc gtgtcttcgc cagagggaag cagcggaagt ccctcgaccc cggcctcttt
     1201 gatggtaccg cccctgatta ttacatagag gaggacgcgg actggtgata cccgcctccc
     1261 ttcgcctgct gcccggcggg cgtgtctgtg cgtgtggacg tgcgtgcgag cggggaatgc
     1321 gcggctgggc gtgcgtggcg gtgcgtgtgc gcgtgcgtgg gagctctcgc gcacgtgggc
     1381 gggggggggg tacggctgag gcccgctcgc gtgggcccct ccccggcgtc accacctctg
     1441 taattgatgt acatactaca aacgtgtgtg aacatgtcaa ctctctgttg tcctcggagc
     1501 gatacagttg tgttgttaat ctgggtttgt ttttgttttt ttcagtgttt ttttttttcc
     1561 gctttttggt tcgttggggt ttttgggttt tttttggtcc cttcccccct tcccttttta
     1621 tgaaacttga aaacttgaag gactgctgtg tatctgtaaa taacaaaact attgtgcact
     1681 ccgtgcttgt aaacgtccct cgtccgaact gctacttctg gagcccgtct ccccgaggat
     1741 gtagtctgtg tttgatgttc cccccactcc accccgccgc ccacccgtcc ccgcggtgtg
     1801 aacgtgtggg accagaccct gttctcgggg tgcgcccaag tcactttaac ccccaaacgc
     1861 catcgtcatc agggtaaggt ccactctcca caaagacttg cgagcccagc ccaggggccc
     1921 tgtcttgtct cggtgtgtca gaggccaaac gggctctttc taacggcctg ccagttttta
     1981 aattgcgttg ccgtttcttt ctttacgggg aaaagaaaag aaaattgttc cgtttaattt
     2041 atttgcacaa atgcagaaga cttattctat ctaaattatt acgtaaatat tggaatgtat
     2101 atttttccac agggtgcggg cgggaggcgg gttctctgtt gacttgtctg ttctatgatc
     2161 atgctgctgc cgagctgtgc aaggtggagt ttagggtggc cagaacccag ggaccgttgg
     2221 acttccaagc ttgcttttct cgttctttct tcttctctct cccccattct cccatccctg
     2281 catgggagtg cgctccgcct ttcttcctgc ctgtagctct ctccaggcct ttctatatat
     2341 acttatttat ctgaaataac agagcactga cctcagtgaa cagagtgcct gctgtcgtgg
     2401 tcaccttctc ttgggtctgt cttttgagaa aggctgctgc gtacagggcg agacagccga
     2461 ctgcatgagc acagggtccg accacaggga ccctcagccc gagttggttc cccgagggtc
     2521 ctggagcagc acgcgttcct cgctgcagct gtgtctcatc cttggttgat tttgcacgtt
     2581 ggccaggcgg gtgtcatggg ggaggcgccc gtctcaaggg gcggcctgtt ggggacacag
     2641 catccagcac cagcacctct gccctcccca ttctgcttgg ttcctccagc cacatcgcac
     2701 agagtctctc gggatccctc gggccctcct ccaacttgtc acagcagcct gagcctgctc
     2761 acccgaggag agaagggcgg gcaggagcat ctgcctattt ggaaagcagt gttggccccg
     2821 gtgaggcttc accagcaaag gaaccgtgag cactgtaaca ccgggtgatg gagaacacgt
     2881 gagcttccga gccagggcct cccgaagtct aaaactagct ttcccttttc tcttaacctg
     2941 tgaaccccca cctctgcacc accttaaata ctaacagctc aattcacaca ccctctaaac
     3001 aacagtagtt gcgcttcctg ctagcagtaa cgttttcagc tcttaccaag aaacaggaga
     3061 attttaaatg ctggagcatc tcttatcaga agggatagga tattttgtcc aaagtctcta
     3121 aaacaaacag aaaagcccca gtctgctgct ccctttcctt ctgacctgat gggggcgttg
     3181 gaaaggagta ggcagggtac ctaataagga tctttctggc cttcggctga gccgtttcac
     3241 ccagcctggc ggcgggggag agcggctgga gctggcatct ttctctacag agagatattt
     3301 taggaaatac ttttctcccc cccccatgaa tttttttctt ttggttgatt tttattgttt
     3361 gccctttatt tacaagaaaa taagattgca accccctcct ggtaatgatt tagtagttcc
     3421 ttttcatttc agtttttgga aattaggaga taattctaag agttactaag gatgatttat
     3481 ttaagagaac tacgtcaaat agcgaatgag ttatgggtaa cagtagatga aaataacctt
     3541 tcctgtggga aaggtttctc gaaggcatgg atgcaaatat aaaatattaa aaaaaaaatc
     3601 taaataaagc ttattttaaa atatga
//
LOCUS       XM_032654549             174 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 60S ribosomal protein L39-like
            (LOC116765192), mRNA.
ACCESSION   XM_032654549
VERSION     XM_032654549.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..174
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..174
                     /gene="LOC116765192"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins"
                     /db_xref="GeneID:116765192"
     CDS             1..174
                     /gene="LOC116765192"
                     /codon_start=1
                     /product="60S ribosomal protein L39-like"
                     /protein_id="XP_032510440.1"
                     /db_xref="GeneID:116765192"
                     /translation="MSSHKTLRIKRFLAKKQKQNRPIPQWIQMKSGNKIRASLVAQYD
                     SKRRHWRRTKLGL"
     misc_feature    28..168
                     /gene="LOC116765192"
                     /note="Ribosomal L39 protein; Region: Ribosomal_L39;
                     pfam00832"
                     /db_xref="CDD:425894"
ORIGIN      
        1 atgtcttccc acaagacttt gaggatcaag cgattcctgg ccaagaaaca aaagcagaat
       61 cgtcccattc cccaatggat tcaaatgaaa agtggtaata aaatcagggc ttccctggtg
      121 gcgcagtacg actccaagag aagacattgg agaagaacca agctgggtct ataa
//
LOCUS       XM_032654565             665 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf194 homolog
            (C1H1orf194), transcript variant X1, mRNA.
ACCESSION   XM_032654565
VERSION     XM_032654565.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..665
                     /gene="C1H1orf194"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 Proteins"
                     /db_xref="GeneID:116765193"
     CDS             71..583
                     /gene="C1H1orf194"
                     /codon_start=1
                     /product="protein C1orf194 homolog isoform X1"
                     /protein_id="XP_032510456.1"
                     /db_xref="GeneID:116765193"
                     /translation="MPLTRDPFQNPTLENDDSYLGKLRASEKLPYKNPTHLAQQQEPW
                     CRLSSTPTITSMRQAVYFFDPEIPKDDLDFRLAALYNHHTGTFKSKSETLIHQETIQD
                     AHGIKIQFSGEFLSPPQPPAITSRANIRHWINPKKESIHSIQGSIVSPHTAASNGGYS
                     RKNDGGFFST"
     misc_feature    173..454
                     /gene="C1H1orf194"
                     /note="Protein of unknown function (DUF3695); Region:
                     DUF3695; pfam12494"
                     /db_xref="CDD:463607"
ORIGIN      
        1 gcgtgcaaga ttgtgagcgg ctgcgcgggc ctctcatcac tcttaagcgt gtctcgctcg
       61 acattttacc atgcctctca cccgagaccc tttccagaat cctacgttgg aaaacgatga
      121 ttcctacttg gggaaactgc gggcttccga gaaactgcca tataagaacc caactcacct
      181 tgctcagcaa caggaaccct ggtgtcgact cagctcaact cccacaatca cgtccatgag
      241 gcaggctgtt tatttttttg atcctgagat accgaaggat gatctggatt tccgattagc
      301 agccttgtac aaccaccaca cagggacgtt caagagcaaa agtgagacac tgatacacca
      361 ggagaccatt caggatgccc atggaatcaa gatccaattc tctggagaat ttttatcccc
      421 tccccagcca cccgcgatca cttcccgagc taacatcaga cactggatca accctaagaa
      481 ggagtctatt cacagcatcc agggatccat agtgtcccct cacactgcag ccagcaatgg
      541 agggtattcc cgaaagaatg atggtggctt cttctccacc taagtgttga cgggcccctg
      601 gactaattaa tcatagtgga acatcctgcc gcccacctcc atgaaataga tttgtgtaag
      661 atgaa
//
LOCUS       XM_032654575             527 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf194 homolog
            (C1H1orf194), transcript variant X2, mRNA.
ACCESSION   XM_032654575
VERSION     XM_032654575.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..527
                     /gene="C1H1orf194"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 Proteins"
                     /db_xref="GeneID:116765193"
     CDS             54..449
                     /gene="C1H1orf194"
                     /codon_start=1
                     /product="protein C1orf194 homolog isoform X2"
                     /protein_id="XP_032510466.1"
                     /db_xref="GeneID:116765193"
                     /translation="MPLTRDPFQNPTLENDDSYLGKLRASEIPKDDLDFRLAALYNHH
                     TGTFKSKSETLIHQETIQDAHGIKIQFSGEFLSPPQPPAITSRANIRHWINPKKESIH
                     SIQGSIVSPHTAASNGGYSRKNDGGFFST"
     misc_feature    75..320
                     /gene="C1H1orf194"
                     /note="Protein of unknown function (DUF3695); Region:
                     DUF3695; pfam12494"
                     /db_xref="CDD:463607"
ORIGIN      
        1 cggctgcgcg ggcctctcat cactcttaag cgtgtctcgc tcgacatttt accatgcctc
       61 tcacccgaga ccctttccag aatcctacgt tggaaaacga tgattcctac ttggggaaac
      121 tgcgggcttc cgagataccg aaggatgatc tggatttccg attagcagcc ttgtacaacc
      181 accacacagg gacgttcaag agcaaaagtg agacactgat acaccaggag accattcagg
      241 atgcccatgg aatcaagatc caattctctg gagaattttt atcccctccc cagccacccg
      301 cgatcacttc ccgagctaac atcagacact ggatcaaccc taagaaggag tctattcaca
      361 gcatccaggg atccatagtg tcccctcaca ctgcagccag caatggaggg tattcccgaa
      421 agaatgatgg tggcttcttc tccacctaag tgttgacggg cccctggact aattaatcat
      481 agtggaacat cctgccgccc acctccatga aatagatttg tgtaaga
//
LOCUS       XM_032654588            1392 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus actin related protein T2 (ACTRT2), mRNA.
ACCESSION   XM_032654588
VERSION     XM_032654588.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1392
                     /gene="ACTRT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 15 Proteins"
                     /db_xref="GeneID:116765197"
     CDS             192..1325
                     /gene="ACTRT2"
                     /codon_start=1
                     /product="actin-related protein T2"
                     /protein_id="XP_032510479.1"
                     /db_xref="GeneID:116765197"
                     /translation="MLNPRVLDSPAVIFDNGSGLCKAGLAGEVGPRHVVHSIVGHPKV
                     KMPSVGANQKKYFVGEEALHGGEVLHLHYPIERGLITGWDDMEKLWKHLFERELGVKA
                     SDRPVLMTERSLNPRETREKMAEVMFESFDVPAFYLSDQAVLALYASACITGLVVDSG
                     DGVTCTVPIFEGYSLPHAITKLYVAGRDITEHLTRLLLASGRTFPCVLDKALVDDIKE
                     KLCYVALEPEKELSRRSEEVLREYKLPDGSIICIGDQLYQAPEALFSPEQLGIQSPGL
                     SKMVSGSIARCDADIQKMLYGEIVLSGGTTLFRGLDGRLLRELEQAASKGTTIKITAP
                     PDRCFSTWIGASIITSLSSFKQMWVTSADFKEFGTSVVQRRCF"
     misc_feature    219..1295
                     /gene="ACTRT2"
                     /note="nucleotide-binding domain (NBD) of actin,
                     actin-related proteins T1-T3 (Arp-T1-3), and similar
                     proteins; Region: ASKHA_NBD_actin_Arp-T1-3; cd13397"
                     /db_xref="CDD:466848"
ORIGIN      
        1 agagcagatc cgtgggtggg gatggagggc tctcggggac cggctgtctg ctagccctgc
       61 ctgggagacg cccagagaac cgtggaatcc tgtgccctcg aaacctccag aggagcctct
      121 tacgtcacaa agtggcccag gaggttcttc cgtcttcatt ttggcgaagt gtggatgagg
      181 atgccacagg catgcttaac ccacgcgtgt tagattctcc ggctgtcatt tttgacaatg
      241 ggtccgggct ctgtaaggca ggcctggctg gagaggttgg cccccgccac gtcgtccact
      301 ccatcgtggg gcaccccaag gtcaagatgc cttcggtggg ggccaatcag aagaagtact
      361 ttgtggggga agaggccctg cacgggggcg aggtcttaca cctgcactac cccatcgaac
      421 gaggcctgat cacaggctgg gatgacatgg agaagctctg gaagcatctc ttcgagcggg
      481 agctgggggt caaagccagc gaccggccgg tgctcatgac ggagcgctcg ctgaacccca
      541 gggagacccg ggagaagatg gccgaggtga tgtttgagag cttcgacgtg cccgccttct
      601 acctgtcgga ccaggctgtg ctggccctct acgcctcggc ctgcatcacg ggcctggtgg
      661 tggacagcgg ggacggggtc acctgcaccg tccccatctt tgagggctac tccctgcccc
      721 acgccatcac caagctctac gtggcgggga gagacatcac ggagcacctc acccggctgc
      781 tgctggccag cgggaggacc ttcccgtgcg tgctggacaa agccctggtg gatgacatca
      841 aggagaagct ctgctatgtg gccctggagc cggagaagga gctgtcgcgg aggtcagagg
      901 aggtgctcag ggagtacaag ctgcctgacg gcagcatcat ctgtatcggg gaccagctgt
      961 accaggcgcc cgaggccctg ttctcgcctg agcagctggg catccaaagc ccgggcctct
     1021 ccaaaatggt ctccggcagc atcgccaggt gtgacgccga catccagaag atgctctatg
     1081 gggagattgt gctgtccggg ggcaccacgc tcttccgggg gctggatggc cgtcttctga
     1141 gggagctgga gcaggcagct tccaaaggga ccaccatcaa gatcacagcg ccgcccgacc
     1201 gctgcttctc cacgtggatt ggcgcctcca tcatcacttc cctgagcagc ttcaagcaga
     1261 tgtgggtcac ctctgcggac ttcaaggagt ttgggacgtc cgtggttcag agaaggtgct
     1321 tctgaggggc ccgcgcgcag ggtggctgca gtggggagtg agctcaccgt ttggcaacca
     1381 cgggatgttc aa
//
LOCUS       XM_032654602            1125 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 50 member 1
            (SLC50A1), transcript variant X1, mRNA.
ACCESSION   XM_032654602
VERSION     XM_032654602.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1125
                     /gene="SLC50A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116765203"
     CDS             27..839
                     /gene="SLC50A1"
                     /codon_start=1
                     /product="sugar transporter SWEET1 isoform X1"
                     /protein_id="XP_032510493.1"
                     /db_xref="GeneID:116765203"
                     /translation="MCGSLGGRVPGSKLVGLGGSVIHVCPVDRPSHRKPAVWLKGEGI
                     TQRLGDSWQSLLLREETGKRLQQTAKNLPIPGSDLKHMRMTRSVDSVQFLPFLTTDVN
                     NLSWLSYGALKGNWTLIVVNAVGAVLQTLYILVYLHYCHRKHAVLLQTATLLGVLVLG
                     FGYFWLLVPDTETRLQQLGLFCSVFTISMYLSPLADLAKVIRTKSTQRLSFSLTIATL
                     LTSASWTFYGFRLKDPYIVVPNLPGILTSFIRFWLFWKYPQEQDRNYQLLQT"
     misc_feature    249..458
                     /gene="SLC50A1"
                     /note="Sugar efflux transporter for intercellular
                     exchange; Region: MtN3_slv; pfam03083"
                     /db_xref="CDD:397278"
     misc_feature    552..812
                     /gene="SLC50A1"
                     /note="Sugar efflux transporter for intercellular
                     exchange; Region: MtN3_slv; pfam03083"
                     /db_xref="CDD:397278"
ORIGIN      
        1 ctcgccccac agccccacca gcagagatgt gtgggagtct gggagggaga gttcccggca
       61 gcaagttggt tggactaggg gggtcggtga tacacgtttg tccagtggat cggccaagtc
      121 acagaaagcc ggcagtgtgg ctgaaggggg agggcatcac acaaagactt ggtgattcct
      181 ggcagtccct gttacttagg gaagagaccg gaaagaggct tcagcaaaca gcgaaaaatc
      241 tcccaatccc tggctcggac ctcaagcaca tgcggatgac ccggagtgtg gacagtgtcc
      301 agttcctgcc ctttctcacc acggatgtca acaacctgag ctggctgagt tatggggccc
      361 tgaagggaaa ctggacgcta atcgtcgtca acgccgtggg tgctgtgctt cagaccctgt
      421 atatcttggt gtatctgcac tactgccatc ggaagcatgc tgtgctcctt cagactgcaa
      481 ccctgctggg ggtccttgtc ctgggttttg gctacttttg gctcctggtg cccgacactg
      541 agacccggct tcagcagctg ggcctcttct gcagtgtctt caccatcagt atgtacctct
      601 caccactagc tgacttggcc aaggtcattc gtactaaatc gacccaacgt ctctcctttt
      661 cactcaccat tgccaccctc ctcacctctg cctcctggac gttctatggg tttcgactaa
      721 aagatcccta cattgtggtg cccaaccttc caggaatcct caccagcttc attcgcttct
      781 ggcttttctg gaaatacccc caggagcaag acaggaacta tcaacttcta caaacctgag
      841 ggagttcacc tgaccactgg gcaccttaat gccaacatac taccaaagaa accttgtttc
      901 agctcttcct gctggtcacc tccactggtg aagtgcgttg tggtaaagga aaagaactgc
      961 tttgagaatc cagggactaa agaaagggct ttacttagaa gactggatgg aacctgggag
     1021 atgaatcact tttttttttt ttcaagattt tattttttaa tttgggaggt cgggggaaat
     1081 ctttagaatg tgccttaaaa taaactgttt cctacccctt gccca
//
LOCUS       XM_032654613            1037 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 50 member 1
            (SLC50A1), transcript variant X2, mRNA.
ACCESSION   XM_032654613
VERSION     XM_032654613.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1037
                     /gene="SLC50A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116765203"
     CDS             86..751
                     /gene="SLC50A1"
                     /codon_start=1
                     /product="sugar transporter SWEET1 isoform X2"
                     /protein_id="XP_032510504.1"
                     /db_xref="GeneID:116765203"
                     /translation="MEAGGLADSLLSGACVLFTLGMFSTGLSDLKHMRMTRSVDSVQF
                     LPFLTTDVNNLSWLSYGALKGNWTLIVVNAVGAVLQTLYILVYLHYCHRKHAVLLQTA
                     TLLGVLVLGFGYFWLLVPDTETRLQQLGLFCSVFTISMYLSPLADLAKVIRTKSTQRL
                     SFSLTIATLLTSASWTFYGFRLKDPYIVVPNLPGILTSFIRFWLFWKYPQEQDRNYQL
                     LQT"
     misc_feature    110..370
                     /gene="SLC50A1"
                     /note="Sugar efflux transporter for intercellular
                     exchange; Region: MtN3_slv; pfam03083"
                     /db_xref="CDD:397278"
     misc_feature    464..724
                     /gene="SLC50A1"
                     /note="Sugar efflux transporter for intercellular
                     exchange; Region: MtN3_slv; pfam03083"
                     /db_xref="CDD:397278"
ORIGIN      
        1 caaaggggcg gggctccggc gtcgcgggct ccggttcctg ctagctggcc gcaggcgccg
       61 agctcgggat ccgactcggg gagggatgga ggcgggcgga ttggccgact cgcttctttc
      121 cggagcttgc gtgctcttca ccctcggcat gttctccacc ggcctctcgg acctcaagca
      181 catgcggatg acccggagtg tggacagtgt ccagttcctg ccctttctca ccacggatgt
      241 caacaacctg agctggctga gttatggggc cctgaaggga aactggacgc taatcgtcgt
      301 caacgccgtg ggtgctgtgc ttcagaccct gtatatcttg gtgtatctgc actactgcca
      361 tcggaagcat gctgtgctcc ttcagactgc aaccctgctg ggggtccttg tcctgggttt
      421 tggctacttt tggctcctgg tgcccgacac tgagacccgg cttcagcagc tgggcctctt
      481 ctgcagtgtc ttcaccatca gtatgtacct ctcaccacta gctgacttgg ccaaggtcat
      541 tcgtactaaa tcgacccaac gtctctcctt ttcactcacc attgccaccc tcctcacctc
      601 tgcctcctgg acgttctatg ggtttcgact aaaagatccc tacattgtgg tgcccaacct
      661 tccaggaatc ctcaccagct tcattcgctt ctggcttttc tggaaatacc cccaggagca
      721 agacaggaac tatcaacttc tacaaacctg agggagttca cctgaccact gggcacctta
      781 atgccaacat actaccaaag aaaccttgtt tcagctcttc ctgctggtca cctccactgg
      841 tgaagtgcgt tgtggtaaag gaaaagaact gctttgagaa tccagggact aaagaaaggg
      901 ctttacttag aagactggat ggaacctggg agatgaatca cttttttttt ttttcaagat
      961 tttatttttt aatttgggag gtcgggggaa atctttagaa tgtgccttaa aataaactgt
     1021 ttcctacccc ttgccca
//
LOCUS       XM_032602342             877 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 50 member 1
            (SLC50A1), transcript variant X3, mRNA.
ACCESSION   XM_032602342
VERSION     XM_032602342.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..877
                     /gene="SLC50A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116765203"
     CDS             88..591
                     /gene="SLC50A1"
                     /codon_start=1
                     /product="sugar transporter SWEET1 isoform X3"
                     /protein_id="XP_032458233.1"
                     /db_xref="GeneID:116765203"
                     /translation="MEAGGLADSLLSGACVLFTLGMFSTGLSDLKHMRMTRSVDSVQF
                     LPFLTTDVNNLSWLSYGALKGNWTLIVVNAVGAVLQTLYILVYLHYCHRKAKVIRTKS
                     TQRLSFSLTIATLLTSASWTFYGFRLKDPYIVVPNLPGILTSFIRFWLFWKYPQEQDR
                     NYQLLQT"
     misc_feature    112..372
                     /gene="SLC50A1"
                     /note="Sugar efflux transporter for intercellular
                     exchange; Region: MtN3_slv; pfam03083"
                     /db_xref="CDD:397278"
     misc_feature    <370..564
                     /gene="SLC50A1"
                     /note="Sugar efflux transporter for intercellular
                     exchange; Region: MtN3_slv; pfam03083"
                     /db_xref="CDD:397278"
ORIGIN      
        1 cgcaaagggg cggggctccg gcgtcgcggg ctccggttcc tgctagctgg ccgcaggcgc
       61 cgagctcggg atccgactcg gggagggatg gaggcgggcg gattggccga ctcgcttctt
      121 tccggagctt gcgtgctctt caccctcggc atgttctcca ccggcctctc ggacctcaag
      181 cacatgcgga tgacccggag tgtggacagt gtccagttcc tgccctttct caccacggat
      241 gtcaacaacc tgagctggct gagttatggg gccctgaagg gaaactggac gctaatcgtc
      301 gtcaacgccg tgggtgctgt gcttcagacc ctgtatatct tggtgtatct gcactactgc
      361 catcggaagg ccaaggtcat tcgtactaaa tcgacccaac gtctctcctt ttcactcacc
      421 attgccaccc tcctcacctc tgcctcctgg acgttctatg ggtttcgact aaaagatccc
      481 tacattgtgg tgcccaacct tccaggaatc ctcaccagct tcattcgctt ctggcttttc
      541 tggaaatacc cccaggagca agacaggaac tatcaacttc tacaaacctg agggagttca
      601 cctgaccact gggcacctta atgccaacat actaccaaag aaaccttgtt tcagctcttc
      661 ctgctggtca cctccactgg tgaagtgcgt tgtggtaaag gaaaagaact gctttgagaa
      721 tccagggact aaagaaaggg ctttacttag aagactggat ggaacctggg agatgaatca
      781 cttttttttt ttttcaagat tttatttttt aatttgggag gtcgggggaa atctttagaa
      841 tgtgccttaa aataaactgt ttcctacccc ttgccca
//
LOCUS       XM_032602352            1088 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 50 member 1
            (SLC50A1), transcript variant X4, mRNA.
ACCESSION   XM_032602352
VERSION     XM_032602352.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1088
                     /gene="SLC50A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 88% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116765203"
     CDS             5..802
                     /gene="SLC50A1"
                     /codon_start=1
                     /product="sugar transporter SWEET1 isoform X4"
                     /protein_id="XP_032458243.1"
                     /db_xref="GeneID:116765203"
                     /translation="MAERAGAEPGAQRGGAPASRAPVPASWPQAPSSGSDSGRDGGGR
                     IGRLASFRSLRALHPRHVLHRPLGPQAHADDPECGQCPVPALSHHGCQVRGAINLSWL
                     SYGALKGNWTLIVVNAVGAVLQTLYILVYLHYCHRKHAVLLQTATLLGVLVLGFGYFW
                     LLVPDTETRLQQLGLFCSVFTISMYLSPLADLAKVIRTKSTQRLSFSLTIATLLTSAS
                     WTFYGFRLKDPYIVVPNLPGILTSFIRFWLFWKYPQEQDRNYQLLQT"
     misc_feature    <296..421
                     /gene="SLC50A1"
                     /note="Sugar efflux transporter for intercellular
                     exchange; Region: MtN3_slv; cl46784"
                     /db_xref="CDD:481124"
     misc_feature    515..775
                     /gene="SLC50A1"
                     /note="Sugar efflux transporter for intercellular
                     exchange; Region: MtN3_slv; pfam03083"
                     /db_xref="CDD:397278"
ORIGIN      
        1 ggggatggcc gagcgcgcag gggcggagcc gggggcgcaa aggggcgggg ctccggcgtc
       61 gcgggctccg gttcctgcta gctggccgca ggcgccgagc tcgggatccg actcggggag
      121 ggatggaggc gggcggattg gccgactcgc ttctttccgg agcttgcgtg ctcttcaccc
      181 tcggcatgtt ctccaccggc ctctcggacc tcaagcacat gcggatgacc cggagtgtgg
      241 acagtgtcca gttcctgccc tttctcacca cggatgtcaa gtgagagggg cgatcaacct
      301 gagctggctg agttatgggg ccctgaaggg aaactggacg ctaatcgtcg tcaacgccgt
      361 gggtgctgtg cttcagaccc tgtatatctt ggtgtatctg cactactgcc atcggaagca
      421 tgctgtgctc cttcagactg caaccctgct gggggtcctt gtcctgggtt ttggctactt
      481 ttggctcctg gtgcccgaca ctgagacccg gcttcagcag ctgggcctct tctgcagtgt
      541 cttcaccatc agtatgtacc tctcaccact agctgacttg gccaaggtca ttcgtactaa
      601 atcgacccaa cgtctctcct tttcactcac cattgccacc ctcctcacct ctgcctcctg
      661 gacgttctat gggtttcgac taaaagatcc ctacattgtg gtgcccaacc ttccaggaat
      721 cctcaccagc ttcattcgct tctggctttt ctggaaatac ccccaggagc aagacaggaa
      781 ctatcaactt ctacaaacct gagggagttc acctgaccac tgggcacctt aatgccaaca
      841 tactaccaaa gaaaccttgt ttcagctctt cctgctggtc acctccactg gtgaagtgcg
      901 ttgtggtaaa ggaaaagaac tgctttgaga atccagggac taaagaaagg gctttactta
      961 gaagactgga tggaacctgg gagatgaatc actttttttt tttttcaaga ttttattttt
     1021 taatttggga ggtcggggga aatctttaga atgtgcctta aaataaactg tttcctaccc
     1081 cttgccca
//
LOCUS       XM_032602367            1560 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ephrin A1 (EFNA1), mRNA.
ACCESSION   XM_032602367
VERSION     XM_032602367.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1560
                     /gene="EFNA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738713"
     CDS             141..758
                     /gene="EFNA1"
                     /codon_start=1
                     /product="ephrin-A1"
                     /protein_id="XP_032458258.1"
                     /db_xref="GeneID:116738713"
                     /translation="MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTVHVQLN
                     DYLDIICPHYEDESVADAAMERYTLYLVEREQYQLCQPQSKDQVRWQCNQPSARHGPE
                     KLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHYQEDQCLRLKVNVNGKITHSPQAHAN
                     AQEKRLPADDPEVQVLHSIGHSAAPRLFPLAWAVLLLPFLLLQTL"
     misc_feature    195..581
                     /gene="EFNA1"
                     /note="Ectodomain of Ephrin A; Region:
                     Ephrin-A_Ectodomain; cd10425"
                     /db_xref="CDD:259896"
     misc_feature    order(276..278,399..413,447..452,471..488,492..497)
                     /gene="EFNA1"
                     /note="receptor binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:259896"
ORIGIN      
        1 cgccggccca aaaggcggag tcgcgaggcg gagggcccag agctgtgagc actgtgctga
       61 gtgcgccgcg gagaaatcct gcgggaaccc agacccggag gagaccctcg tccccgcccg
      121 gcctggcccg gccccgcgct atggagttcc tctgggcccc tctcttgggt ctgtgctgca
      181 gtctggccgc tgctgaccgc cacaccgtct tctggaacag ttcaaacccc aagtttcgga
      241 atgaggacta cacagtacac gtgcagttaa atgactacct ggacatcatc tgtcctcatt
      301 atgaggatga gtctgtggca gacgctgcca tggagcggta cacactgtac ctggtggagc
      361 gcgagcagta ccaactgtgc caaccccaat ccaaggacca ggtccgctgg cagtgcaacc
      421 agcccagtgc caggcatggc ccagagaagc tgtctgagaa gttccagcgc ttcacaccct
      481 ttaccctggg caaggagttc aaagagggac acagctacta ctacatctcc aaacccatcc
      541 actaccagga agaccagtgc ttgaggttga aggtgaacgt caatggcaaa atcactcaca
      601 gtcctcaggc ccatgccaat gcacaggaga agaggcttcc agcagatgac ccagaggtgc
      661 aggttctaca tagcattggt cacagtgccg ccccccgcct cttcccactc gcctgggctg
      721 tgctgctcct gccattcctg ctgctgcaaa ccctatgaag gtgtatgctg tgtgcattgt
      781 aagaactgga actgggctga gggggcaggg caggcctccc tcacctgcct ggggcccctc
      841 ccaaagccct agtcctggga accactccta ccacatgcac aagctgccac ccagcagcat
      901 caaaacgggt cagtattaaa gctttcaacc caaaggaggt cagcaagcct gacagtgcca
      961 tcctcgcctc cacctcagag ggatggacaa agaagtggac agtcctttcc ccttcattcc
     1021 tgcccttaag ccaaagaaac gggctgtgcg gacatggcct cttagaaggg cactgtggga
     1081 gccgagctga aaggggcttg ggcttacatg gatggacact gagcttggca aagatgtccc
     1141 tcccagagag agccaggatg gctgtgaagg aaaagcaaga gacagtttcc tgcttgggag
     1201 ccagggacag gagaggcaac atgcttgggc tgacccagca tctcccccaa gactgttctt
     1261 tgtggaggtg ccacggagag gactgtagcc agtcactaca tcctctccca tcctggggca
     1321 tcactccaca gagctgtgcc agcagggggg ctgtgccaac ctgttcttaa gagtgtagct
     1381 gtaagggcag tgcccatgtg cacagagtct gtgcctagac tgactgtagc ctgaagggca
     1441 gggcccacga gtacagaatc tgtatatgaa ctagatgtgt gtctgctgat ttctacaact
     1501 ggagtttttt tatacaatgt tctttgtctc aaaataaagc aatgtgtttg tttttttgga
//
LOCUS       XM_032602379             423 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dolichyl-phosphate mannosyltransferase
            subunit 3, regulatory (DPM3), mRNA.
ACCESSION   XM_032602379
VERSION     XM_032602379.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..423
                     /gene="DPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738718"
     CDS             74..352
                     /gene="DPM3"
                     /codon_start=1
                     /product="dolichol-phosphate mannosyltransferase subunit
                     3"
                     /protein_id="XP_032458270.1"
                     /db_xref="GeneID:116738718"
                     /translation="MTKLAQWLWGLALLGSTWAALTTGALGLELPLSCREVLWSLPAY
                     LLVSAGCYALGTVGYRVATFHDCEDAARELRSQIQEARADLARRGMRF"
     misc_feature    74..343
                     /gene="DPM3"
                     /note="Dolichol-phosphate mannosyltransferase subunit 3
                     (DPM3); Region: DPM3; pfam08285"
                     /db_xref="CDD:462416"
ORIGIN      
        1 cgagccgtgg aggattccgg acgctgacgt cggagccgtg cggctctgag aagacgctgg
       61 gctgagagtg accatgacga aattagcgca gtggctgtgg gggctggcgc tcctgggctc
      121 cacctgggct gctttgacca cgggagccct gggcctggag ctgccattgt cttgccggga
      181 ggtcctgtgg tcactgcccg cctacttgct ggtgtccgcc ggctgctatg cactgggtac
      241 tgtgggctat cgcgtggcca cttttcacga ctgcgaggac gccgcccgcg agttgcggag
      301 ccagatccag gaggcccgag ccgacttggc ccgcaggggg atgcgcttct gacaccctaa
      361 cctcattccc gcacggacag cctgctctcc cctcccccat taaagcgcaa gtttattttc
      421 taa
//
LOCUS       XM_032602389             948 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus olfactory receptor 2A5-like
            (LOC116738726), mRNA.
ACCESSION   XM_032602389
VERSION     XM_032602389.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..948
                     /gene="LOC116738726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 Proteins"
                     /db_xref="GeneID:116738726"
     CDS             1..948
                     /gene="LOC116738726"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:556..558,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: olfactory receptor
                     2A5-like"
                     /protein_id="XP_032458280.1"
                     /db_xref="GeneID:116738726"
                     /translation="MRMPPGQNQSWVSEFILLGFSSDPTTNRILFIAFLLLYLSSVLG
                     NGLIVTLICLDMHLHTSMYFFLCILSLLDMGSVTTTMPQMLVHLLAQSQTISFAGCWL
                     QMYMFGALGLTESIFFVVMAYDRYVAICYPPRYAVILSWGLCTWLSAGTWACGFFFFV
                     IHTFFTMRLPYCGPNMVNHYFCEGPXVRSLACMDTNLIAMVDLVISVFMVVAPLSLIV
                     ASYIRIAQAILKIKSMQPRCKAFSICASHLTVVTFFYAPATYIYIRPNSRYSPEQDKQ
                     ISLFYNVFTVLLNPVVYILRNKDIKRAFLKVMQSSRLAW"
     misc_feature    85..891
                     /gene="LOC116738726"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    88..162
                     /gene="LOC116738726"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    187..255
                     /gene="LOC116738726"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    301..369
                     /gene="LOC116738726"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    436..486
                     /gene="LOC116738726"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    595..666
                     /gene="LOC116738726"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    721..789
                     /gene="LOC116738726"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    814..891
                     /gene="LOC116738726"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 atgcggatgc ctccagggca gaaccaaagc tgggtttctg aatttatcct gcttggcttc
       61 tccagtgacc ccacaaccaa caggatcctc ttcattgcct tccttctcct ttatctgagc
      121 tcagtccttg gcaatgggct catcgtcacc ctgatatgcc tggacatgca tctccacact
      181 tccatgtact tcttcctctg tatcctctcc ctgctggata tgggctctgt caccaccacc
      241 atgccccaga tgttggtgca tcttcttgct caatctcaga ccatctcctt tgctggctgt
      301 tggctacaaa tgtatatgtt tggtgctctg ggcctgaccg agtccatttt ctttgtagtc
      361 atggcttatg accgatatgt ggccatctgc tacccaccgc gttatgctgt catccttagc
      421 tggggtctgt gcacatggct gtcagctggg acctgggcct gtggtttctt cttctttgtg
      481 atccatacat ttttcactat gaggctgcca tactgtgggc ccaacatggt caaccactac
      541 ttctgtgagg gtccctaagt acgaagcttg gcttgcatgg ataccaacct cattgcaatg
      601 gtggacctgg tcatcagtgt cttcatggtt gttgccccac tctccctcat tgtggcttcc
      661 tacatccgta ttgcccaggc cattctcaag atcaagtcca tgcagccccg ctgcaaggct
      721 ttctctatct gtgcttccca cctgactgtg gtcacattct tctatgctcc agccacctac
      781 atctatataa ggcccaattc aagatattcc cctgagcaag acaagcagat ctcactcttt
      841 tataatgtct tcactgtcct gcttaaccct gtggtctaca ttttgaggaa caaggacatt
      901 aagagggctt ttctcaaagt gatgcagagc agtagattag cctggtga
//
LOCUS       XM_032602402            2409 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus polo like kinase 3 (PLK3), mRNA.
ACCESSION   XM_032602402
VERSION     XM_032602402.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2409
                     /gene="PLK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 2 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738730"
     CDS             139..2082
                     /gene="PLK3"
                     /codon_start=1
                     /product="serine/threonine-protein kinase PLK3"
                     /protein_id="XP_032458293.1"
                     /db_xref="GeneID:116738730"
                     /translation="MEPATGFLSPRPFPRAAALPAPPAGPGPPGSPMPGPEPEVLAGP
                     LAPDAGRLITDPRSGRTYFKGRLLGKGGFARCYEATDTETGNAYAVKVISQSRITKPH
                     QREKILNEIELHRGLQHRHIVRFSHHFEDADNIYIFLELCSRKSLAHIWKARHTLLEP
                     EVRYYLRQILSGLKYLHQRGILHRDLKLGNFFITENMELKLGDFGLATRLEPPEHRNK
                     TICGTPNYVAPEVLQRQGHGPEADVWSLGCVMYTLLCGSPPFETVDLKETYRCIKQVH
                     YTLPASLSLPARQLLATILRASPQDRPSIDQILRHNFFTKGYTPYRLPVSSCVTVPDL
                     TPLNPARILFVKVTKSLFGRKKSKNKNHPEEQDEVSCLVNSLTRMSIGHQGARPEAPA
                     ASGPAPISLVETALEDSSPRGTLASSGDGFEEGLTVATVVESALCALRNCLAFMSPAE
                     QNPAPLAQPEPLVWVSKWVDYSNKFGFGYQLSSCRVAVLFNDGTHMALSANRKTVHYD
                     PTSTKHFSFSVGAVPRALQPQLSVLRYFASYMEQRLMKGGDLPSVEEVEVPVPPLLLQ
                     WVKTDQALLMLFSDGTIQVNFYGDHTKLILSGWEPLLVTFVARNRSACTYLASHLQQL
                     GCSPDLRQRLCYALRLLRDRCPV"
     misc_feature    316..1080
                     /gene="PLK3"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(340..351,358..360,364..366,403..405,409..411,
                     505..507,553..564,691..693,703..708,712..714,742..747)
                     /gene="PLK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
     misc_feature    1519..1785
                     /gene="PLK3"
                     /note="First polo-box domain (PBD) of polo-like kinases
                     Plk1, Plk2, Plk3, and Plk5; Region: POLO_box_1; cd13118"
                     /db_xref="CDD:240561"
     misc_feature    order(1537..1548,1753..1755,1759..1773)
                     /gene="PLK3"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:240561"
     misc_feature    1834..2067
                     /gene="PLK3"
                     /note="Second polo-box domain (PBD) of polo-like kinases
                     Plk1, Plk2, Plk3, and Plk5; Region: POLO_box_2; cd13117"
                     /db_xref="CDD:240560"
     misc_feature    order(1843..1845,1900..1902,1909..1911,1915..1917)
                     /gene="PLK3"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:240560"
ORIGIN      
        1 ggggcaggcg ttcattgata aaaacgctgg gctctctcgg gcgcgagcgc cgcgtagcaa
       61 atccagccag cgccacgcgc tgccgcggcc tggcggaagc cagaattagc cgggcccgcg
      121 cagcgccgca ccgccctcat ggagcccgcg accggcttcc tgtccccgcg ccccttcccg
      181 cgtgctgccg ccctgccagc gccccccgcc gggcccggac ctcctgggag tcccatgccg
      241 ggacctgagc cggaggtgct ggccgggccg ctggcgccgg acgctgggcg cctcatcact
      301 gacccgcgca gcggccgcac ctacttcaaa ggccgccttt tgggcaaggg gggcttcgcc
      361 cgctgctacg aggccactga cacagagacc ggcaatgcct acgcggtcaa agtcatctcg
      421 cagagccgca tcaccaagcc gcatcagcgc gagaagatcc taaacgagat tgagctgcac
      481 cgcggcctgc agcaccgcca cattgtgcgt ttctcacacc actttgagga tgctgacaac
      541 atatacattt tcctggagct ctgcagccga aagtccctgg cccacatctg gaaggcccgg
      601 cacaccctgt tggagccaga ggtgcgctac taccttcggc agatcctttc cggactcaag
      661 tacttgcacc agcgaggcat cttgcaccga gacctcaagc tgggaaattt tttcatcact
      721 gagaacatgg aactgaagtt gggggatttt gggctggcaa ccaggttgga gcccccggag
      781 cataggaaca agaccatctg tggcaccccc aactatgtgg ccccagaagt gctgcagaga
      841 cagggccacg gccctgaggc agatgtgtgg tccctgggct gtgtcatgta cacactgcta
      901 tgtgggagcc ccccctttga gacagttgac ctgaaggaga cataccgctg catcaaacag
      961 gttcactaca cgctgcctgc cagcctctca ctgcctgccc ggcagctcct ggccaccatc
     1021 cttcgagcct caccccaaga ccgcccctca attgaccaga tcctgcgcca caacttcttt
     1081 accaagggct acacccccta ccggctccct gtcagcagct gtgtgacagt cccagacctg
     1141 acacccctta acccagctag gattctgttt gtcaaagtta ccaagagcct atttgggagg
     1201 aagaagagta agaataagaa ccatcctgag gagcaggacg aagtctcctg tttggtgaac
     1261 agcctcactc ggatgtccat tggccatcag ggtgccaggc ccgaggctcc ggcagcttca
     1321 ggtccagccc ccatcagcct ggtagagaca gcacttgagg acagttcacc ccgtgggaca
     1381 ctggcgagca gtggagatgg gtttgaagaa ggtctgactg tggccacagt ggtggagtca
     1441 gccctctgtg ctctgagaaa ctgcctggcc ttcatgtccc cagctgaaca gaaccccgct
     1501 cccctggccc agccagagcc tctggtgtgg gtcagcaagt gggttgacta ttccaacaag
     1561 tttggctttg ggtatcaact gtccagctgc cgtgtggctg tgctcttcaa cgatggcaca
     1621 cacatggccc tgtcagccaa cagaaagact gtgcactacg accccaccag caccaagcac
     1681 ttctccttct ctgtgggtgc tgtgcctcgg gccctgcagc ctcagctgag tgtcctgagg
     1741 tattttgcct cctacatgga gcagcgcctc atgaagggtg gagatctgcc cagtgtggaa
     1801 gaggtggagg tgcctgtccc cccactcctg ctacagtggg tcaagactga tcaggcccta
     1861 ctcatgctct ttagtgatgg caccatccag gtgaacttct acggagacca caccaagctg
     1921 atcctcagtg gctgggagcc cctccttgtg acttttgtgg cccgcaatcg cagtgcttgt
     1981 acttaccttg cttcccacct tcagcagctg ggctgctccc cagacctgag gcagcggctc
     2041 tgctatgctc tgcgcctgct ccgggaccgc tgcccagtct aggccccaac ctgcggggcc
     2101 ggccaccacc caagccctca ggcctgacgc ctatgcctgt aaggctctgg cccttgcctt
     2161 tgtggccctc cctgttcctt tggtgcctca ctgggggctc tgggccgaat cccccaggga
     2221 atcagggacc agctttactg gggttggagg cagcctccta ccccttctcc aagaaaagcc
     2281 tgagccttag cccctcgcta gggggcgtta tttatggacc acttttattt attgacagac
     2341 atttatttat tgggatgtga gccccaggga gggcctcctc ctggtataat aaaccgtttt
     2401 tgcaaaact
//
LOCUS       XM_032602414            2222 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus bestrophin 4 (BEST4), mRNA.
ACCESSION   XM_032602414
VERSION     XM_032602414.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2222
                     /gene="BEST4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 18 Proteins, and 54%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116738738"
     CDS             133..1536
                     /gene="BEST4"
                     /codon_start=1
                     /product="bestrophin-4"
                     /protein_id="XP_032458305.1"
                     /db_xref="GeneID:116738738"
                     /translation="MTVSYTLKVAEARFGGFSGLLLRWRGSIYKLLYKEFLLFIVLYA
                     LLSITYRLLLTQEQRYVYAQVARYCNRSADLIPLSFVLGFYVTLVVNRWWAQYTSIPL
                     PDQLMCVISASVHGVDQRGRLLRRTLIRYANLASVLVLRSVSTRVLKRFPTMEHVVDA
                     GFMSQEERKKFESLKSDFNKYWVPCVWFTNLAAQARRDGRIRDDIALCLLLEELNKYR
                     AKCSMLFHYDWISIPLVYTQVVTIAVYSFFALSLVGRQFVESEAGAAKPQKPLEPGPA
                     LGDLDMYVPLTTLLQFFFYAGWLKVAEQIINPFGEDDDDFETNKLIDRNLQVSLLSVD
                     DMYQNLPAVEKDSYWDEDSAQPPYTVATVAESLRPSFLGSTFNLRISDDPEQSLQVEA
                     SPGPARPVTAAQTPLLGRFLGVGAPSPAISLRNFGRIRGAPRTPHLLRFRAEEGGDLE
                     AAGRIEEEGSGDEAQEP"
     misc_feature    154..1104
                     /gene="BEST4"
                     /note="RFP-TM, chloride channel; Region: Bestrophin;
                     pfam01062"
                     /db_xref="CDD:460047"
ORIGIN      
        1 atgcacccgg aggcccagct tcctgctcca gccttgaaga cgcagccata ccgctagtca
       61 ccatgctgct ggccatcagg atgtaggagc cagctgcgtc cccggtcccc tacctacctg
      121 gcccgcagca ccatgacggt ttcatacacc ctcaaagtag cggaggcccg cttcggaggc
      181 ttctctggcc tgcttctccg ttggagggga agcatctaca agctcctcta caaggagttc
      241 ctcctattca tcgtcctgta tgctctgctc agcatcacct accggctgtt gctgacccag
      301 gaacagaggt atgtgtatgc tcaggtggct cgatactgca accgctctgc agacctcatc
      361 cccttgtcct ttgtactagg tttctacgtg accttggtgg tgaaccgctg gtgggcccag
      421 tacacaagca tcccactgcc ggaccagctg atgtgcgtca tctcggccag cgtgcacggc
      481 gtggaccagc gcggccgcct gctgcgccgc acccttatcc gctacgccaa cctggcgtcg
      541 gtactggtgc tgcgctcggt cagcacccgc gtgctcaagc gcttccccac catggagcac
      601 gtggtggacg caggtttcat gtcccaggaa gagaggaaaa agtttgagag cctgaaatct
      661 gacttcaata agtactgggt cccctgcgtc tggttcacca acctggcggc ccaggcccgg
      721 agggatgggc gaatccgtga tgatattgct ctctgcctgc tcctggaaga gctgaacaag
      781 taccgggcca agtgcagcat gctgttccac tatgactgga tcagcatccc cctcgtctac
      841 acccaagtgg tgaccatagc agtatactcc ttctttgccc tctccctggt tggccgccag
      901 ttcgtggagt cagaggcagg ggctgcgaaa cctcagaagc ctctggagcc agggccagcc
      961 ctgggggacc tggacatgta cgtgcctctc accactctgc tgcagttctt cttctatgct
     1021 ggctggctca aggtggcaga acagatcatc aatccctttg gtgaggatga tgacgacttt
     1081 gaaaccaaca agcttataga ccgcaacttg caggtgtccc tgctctccgt ggatgacatg
     1141 taccagaacc tgcctgctgt ggagaaggac tcatattggg atgaggactc agcgcagccg
     1201 ccctacactg tggccactgt ggccgagtca ctgcggcctt ccttcctggg ttccaccttc
     1261 aacctgcgca ttagcgacga ccctgagcag agcctgcagg tggaagcgtc ccctgggcca
     1321 gcccggccgg tgactgccgc gcagaccccg ctgctcggcc gcttcctggg cgtaggagcg
     1381 ccctcgccag ccatcagcct ccggaacttt ggccgcatcc gaggagcccc tcggacccct
     1441 cacctgctgc gcttccgggc cgaggagggc ggcgacctcg aggccgcggg ccgcatcgag
     1501 gaggaggggt caggggacga ggctcaggag ccctaagcag aggcagcggg gccgggccat
     1561 ctggctgcct cccctaggcc ctccggagct attagagcag cacttccatg caccctaagc
     1621 cggagcactt agggacgacc cttgtgaagg cagaagagcc tgaaacagtt aggaatgcat
     1681 ccactttggc ttgggggagg tgaagctagg atacaagagg tgaggtacag aggactagag
     1741 ccaaggggca cgattaattt cctccgcaat gcggggctag gccggttctt gagggagcat
     1801 cagtatcact gaagggctgg ttaaagtttt gggtatgact cccagcattt gattcattaa
     1861 atctgggatg gggtcaagaa tttgcatttc taataagttc ccagggaatg ctgctgctgc
     1921 tgccccaggg atcacaattt gagtcataca taaagagatg tttaggatat tccttactgt
     1981 gataacctca ctctgatgag gcgtcaaagt gtgtgctggg gtacttttgc ttcatctgtc
     2041 atattcaatt ttttgtttac aatgaaaata tattattgtg caattaaaat tgcttaaaac
     2101 tgaactgtaa tgctctgcca atggactaaa gatgagggtt tgagagtctg ccctgaagct
     2161 gattcaactg atacgtgagg gtagtcatac accacccagc ctagacttcc agcatctgaa
     2221 cc
//
LOCUS       XM_032602429            2488 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BTB domain containing 19 (BTBD19),
            transcript variant X1, mRNA.
ACCESSION   XM_032602429
VERSION     XM_032602429.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2488
                     /gene="BTBD19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116738743"
     CDS             532..1506
                     /gene="BTBD19"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 19 isoform X1"
                     /protein_id="XP_032458320.1"
                     /db_xref="GeneID:116738743"
                     /translation="METPGLIVHGEAAPFSTALRSLVNNPLYSDVRFVVGQERQEVFA
                     HRCLLACRCNFFQRLLGSEPGPGVPSPVVLSTVPAEAFLAVLEFLYTNSAKLHRHSVL
                     EVLTAAVEYGLEELRELCLQFVMKVLDVELVCEALQVGVAGQACRWSPCGGPGYMAPP
                     VSTRPPSFCSQIAVSFSLGPLQERCVAFIEAHSQETLRTRGFLELSAPALLLLLRSDK
                     LCVDEAELVLAARSWARVGAAVLERPAAEVAAPVVRELRLALLAPAELSALEEQNRRE
                     PLIPVEQIVEAWKCHALRRGDVARGAPCRRRRGTLPREHHRFLDLPFK"
     misc_feature    574..903
                     /gene="BTBD19"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in BTB/POZ
                     domain-containing protein 19 (BTBD19); Region:
                     BTB_POZ_BTBD19; cd18294"
                     /db_xref="CDD:349603"
     misc_feature    1042..1233
                     /gene="BTBD19"
                     /note="BACK (BTB and C-terminal Kelch) domain; Region:
                     BACK; cl28903"
                     /db_xref="CDD:475122"
ORIGIN      
        1 tctgaaccca ggacaggcag gggccagggt gccaagaccc tccgactctg cttagggccc
       61 ctctagggct gaagttttct ctgggcctgt gggagctggg cggggcctcg tctctggctg
      121 ggctctagtt tccgtggaaa cccacaggct tcccacccca gcgctgcctg ggcatgctcc
      181 cagctggggc ctcatccaca gccagcctct cctcctgagt ccagtctgct ctaccttggc
      241 ctctcttggt cccctccctg agtccccatc cccaagccaa gcctctggcc tcctccactg
      301 gcctctgatg ccttcaggaa cctgggcctc ctgcctcatt cctaaacttt agcttctcag
      361 caaacaggcc tcccaagctc ttgcccctcc ctctcgggcc tttctagctc ctcacaagct
      421 ttagggctca accaggcctc ctgctccttc cacctaccgc ctcccacgga ccagcagaca
      481 acaggcctcc taggctgttc ctcctgctca ctcccctgcc ctaccccacc catggagacc
      541 ccaggactga ttgtgcacgg ggaggctgcg cccttttcca cagcactccg aagcctcgtc
      601 aacaaccccc tatacagtga tgttcgcttt gtcgtcggtc aagaacggca ggaggtgttt
      661 gcccaccggt gcttgttggc atgtagatgc aacttcttcc agcgacttct gggctcagag
      721 ccgggccccg gggtgcctag ccctgtggtg ctgagcaccg tgccagctga ggccttcctg
      781 gcagtgctgg agtttctgta caccaacagt gccaagctgc accgccactc cgtgctggag
      841 gtgctgacgg cggctgtgga gtatgggctg gaggaactgc gagagctgtg cctgcagttt
      901 gtgatgaagg tgctagatgt ggagctggtt tgtgaggcac tgcaggtggg tgttgctgga
      961 caggcttgca ggtggtcccc ctgtggaggg ccgggctaca tggcccctcc agtctcaacc
     1021 cgacctccct cattctgctc tcagattgcc gtatccttta gcctgggacc gctgcaggag
     1081 cgctgtgtag ctttcataga ggcccacagc caggagaccc tccggacccg tggtttcctg
     1141 gagctgtcgg cacccgcgtt gctgctcctg ctgcgcagcg acaagctctg cgtggatgag
     1201 gccgagctgg tcctggcagc ccggagctgg gcgcgcgtgg gcgcggcggt gctggagcgg
     1261 cctgcggccg aggtggcggc cccggtggtg cgggagctga gactggcctt gctggctccg
     1321 gcagagctga gcgccctgga agagcagaac cggcgggagc cgctcatccc ggtggaacag
     1381 atcgtagagg cgtggaaatg ccatgctctg cggagagggg atgtggcccg gggcgccccg
     1441 tgccgccgcc ggaggggtac cctgccccgg gagcatcatc gctttctgga cctgcccttt
     1501 aagtgaccaa atgccgcgac ttgcgaggaa ttctgggcct ctcctaaact acagctccca
     1561 acatgctccg cgctcggagc gggtttccgc tcccagaatg cccggctagc ggggcgcagg
     1621 aggggcggca gtctgacaag ctcaggggct gtgggtgaag ttccggggga gggcgggcct
     1681 gagcggcgtg tcagtgggct gagccttggc ttcaaggtcc tcgcgaagcc gggaagtggg
     1741 ttccttcgcg ctgtgctgtg gcgttacagc cggctcttgg gcactctcgc ccaccctgtt
     1801 tactctttta attcccacat atcgtttcag ctcagcccct tctttaactc caaacctgcc
     1861 tcctgacgat ctctctctaa atgtcccaca gagacctcag actcaatcca aaattgagct
     1921 cgcccctcat ctttctccag ttttgccccc atcgtgtttc tcatctccgt gggtgcccaa
     1981 gccagaagtc taccgctcat ccttgcttta ttcctcttcc tcacatctgc ctcccgaggc
     2041 ttctaccttt taagaggctg aaaggtagca gaatatgcca tcccaaaata tgcctttttg
     2101 gcataaggtt attttaagct gattattttg agaaaaggga gaagttttga aaacagagaa
     2161 gttacccttt tgtaagggaa atttttagaa tggaaatctc catttgtaag ggtgtctccc
     2221 tctctgtacc aggatgacta actcacagga gaatcttcca gcgaagtcag tgaaatctgc
     2281 ttaataaacc ttatccttgc ttttggtgct ttttcctgat ggccttccta taactggcct
     2341 ccccacagtt ttctttctat tgttagctga aggaggtatt taagcaggta ttttaggcca
     2401 cttcagggag ctactcattt ccccctgggt atctcccatg tatacatgag atatacatgc
     2461 taataaactt ctgggttttt ttgttttc
//
LOCUS       XM_032602436            2392 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BTB domain containing 19 (BTBD19),
            transcript variant X2, mRNA.
ACCESSION   XM_032602436
VERSION     XM_032602436.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2392
                     /gene="BTBD19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738743"
     CDS             532..1407
                     /gene="BTBD19"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 19 isoform X2"
                     /protein_id="XP_032458327.1"
                     /db_xref="GeneID:116738743"
                     /translation="METPGLIVHGEAAPFSTALRSLVNNPLYSDVRFVVGQERQEVFA
                     HRCLLACRCNFFQRLLGSEPGPGVPSPVVLSTVPAEAFLAVLEFLYTNSAKLHRHSVL
                     EVLTAAVEYGLEELRELCLQFVMKVLDVELVCEALQIAVSFSLGPLQERCVAFIEAHS
                     QETLRTRGFLELSAPALLLLLRSDKLCVDEAELVLAARSWARVGAAVLERPAAEVAAP
                     VVRELRLALLAPAELSALEEQNRREPLIPVEQIVEAWKCHALRRGDVARGAPCRRRRG
                     TLPREHHRFLDLPFK"
     misc_feature    574..903
                     /gene="BTBD19"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in BTB/POZ
                     domain-containing protein 19 (BTBD19); Region:
                     BTB_POZ_BTBD19; cd18294"
                     /db_xref="CDD:349603"
     misc_feature    916..1134
                     /gene="BTBD19"
                     /note="BACK (BTB and C-terminal Kelch) domain; Region:
                     BACK; cl28903"
                     /db_xref="CDD:475122"
ORIGIN      
        1 tctgaaccca ggacaggcag gggccagggt gccaagaccc tccgactctg cttagggccc
       61 ctctagggct gaagttttct ctgggcctgt gggagctggg cggggcctcg tctctggctg
      121 ggctctagtt tccgtggaaa cccacaggct tcccacccca gcgctgcctg ggcatgctcc
      181 cagctggggc ctcatccaca gccagcctct cctcctgagt ccagtctgct ctaccttggc
      241 ctctcttggt cccctccctg agtccccatc cccaagccaa gcctctggcc tcctccactg
      301 gcctctgatg ccttcaggaa cctgggcctc ctgcctcatt cctaaacttt agcttctcag
      361 caaacaggcc tcccaagctc ttgcccctcc ctctcgggcc tttctagctc ctcacaagct
      421 ttagggctca accaggcctc ctgctccttc cacctaccgc ctcccacgga ccagcagaca
      481 acaggcctcc taggctgttc ctcctgctca ctcccctgcc ctaccccacc catggagacc
      541 ccaggactga ttgtgcacgg ggaggctgcg cccttttcca cagcactccg aagcctcgtc
      601 aacaaccccc tatacagtga tgttcgcttt gtcgtcggtc aagaacggca ggaggtgttt
      661 gcccaccggt gcttgttggc atgtagatgc aacttcttcc agcgacttct gggctcagag
      721 ccgggccccg gggtgcctag ccctgtggtg ctgagcaccg tgccagctga ggccttcctg
      781 gcagtgctgg agtttctgta caccaacagt gccaagctgc accgccactc cgtgctggag
      841 gtgctgacgg cggctgtgga gtatgggctg gaggaactgc gagagctgtg cctgcagttt
      901 gtgatgaagg tgctagatgt ggagctggtt tgtgaggcac tgcagattgc cgtatccttt
      961 agcctgggac cgctgcagga gcgctgtgta gctttcatag aggcccacag ccaggagacc
     1021 ctccggaccc gtggtttcct ggagctgtcg gcacccgcgt tgctgctcct gctgcgcagc
     1081 gacaagctct gcgtggatga ggccgagctg gtcctggcag cccggagctg ggcgcgcgtg
     1141 ggcgcggcgg tgctggagcg gcctgcggcc gaggtggcgg ccccggtggt gcgggagctg
     1201 agactggcct tgctggctcc ggcagagctg agcgccctgg aagagcagaa ccggcgggag
     1261 ccgctcatcc cggtggaaca gatcgtagag gcgtggaaat gccatgctct gcggagaggg
     1321 gatgtggccc ggggcgcccc gtgccgccgc cggaggggta ccctgccccg ggagcatcat
     1381 cgctttctgg acctgccctt taagtgacca aatgccgcga cttgcgagga attctgggcc
     1441 tctcctaaac tacagctccc aacatgctcc gcgctcggag cgggtttccg ctcccagaat
     1501 gcccggctag cggggcgcag gaggggcggc agtctgacaa gctcaggggc tgtgggtgaa
     1561 gttccggggg agggcgggcc tgagcggcgt gtcagtgggc tgagccttgg cttcaaggtc
     1621 ctcgcgaagc cgggaagtgg gttccttcgc gctgtgctgt ggcgttacag ccggctcttg
     1681 ggcactctcg cccaccctgt ttactctttt aattcccaca tatcgtttca gctcagcccc
     1741 ttctttaact ccaaacctgc ctcctgacga tctctctcta aatgtcccac agagacctca
     1801 gactcaatcc aaaattgagc tcgcccctca tctttctcca gttttgcccc catcgtgttt
     1861 ctcatctccg tgggtgccca agccagaagt ctaccgctca tccttgcttt attcctcttc
     1921 ctcacatctg cctcccgagg cttctacctt ttaagaggct gaaaggtagc agaatatgcc
     1981 atcccaaaat atgccttttt ggcataaggt tattttaagc tgattatttt gagaaaaggg
     2041 agaagttttg aaaacagaga agttaccctt ttgtaaggga aatttttaga atggaaatct
     2101 ccatttgtaa gggtgtctcc ctctctgtac caggatgact aactcacagg agaatcttcc
     2161 agcgaagtca gtgaaatctg cttaataaac cttatccttg cttttggtgc tttttcctga
     2221 tggccttcct ataactggcc tccccacagt tttctttcta ttgttagctg aaggaggtat
     2281 ttaagcaggt attttaggcc acttcaggga gctactcatt tccccctggg tatctcccat
     2341 gtatacatga gatatacatg ctaataaact tctgggtttt tttgttttct ct
//
LOCUS       XM_032602448             833 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase H (PPIH),
            transcript variant X1, mRNA.
ACCESSION   XM_032602448
VERSION     XM_032602448.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..833
                     /gene="PPIH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738752"
     CDS             72..605
                     /gene="PPIH"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase H isoform
                     X1"
                     /protein_id="XP_032458339.1"
                     /db_xref="GeneID:116738752"
                     /translation="MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFR
                     QFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKL
                     RHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTG
                     PNNKPKLPVVISQCGEM"
     misc_feature    93..602
                     /gene="PPIH"
                     /note="cyclophilin-type peptidylprolyl cis- trans
                     isomerases. This family contains eukaryotic, bacterial and
                     archeal proteins which exhibit a peptidylprolyl cis- trans
                     isomerases activity (PPIase, Rotamase) and in addition
                     bind the immunosuppressive drug...; Region: cyclophilin;
                     cl00197"
                     /db_xref="CDD:469651"
     misc_feature    order(267..272,285..287,438..440,444..446,468..470)
                     /gene="PPIH"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 cgaaaccctc agagcaggga ctgggttcgc cgtaaccccg cactcccgac ttctgcttcc
       61 gggtcggagc catggcggtg gcaaattcaa gccctgtcaa tcccgtggta ttttttgatg
      121 tcagcattgg cggccaggaa gttggccgca tgaagatcga gctatttgca gacgttgtgc
      181 ctaagacggc cgagaatttt aggcagttct gcactggaga attcagaaaa gatggggttc
      241 ccataggata caaagggagc accttccaca gggtcataaa agatttcatg attcagggtg
      301 gagattttgt taatggagat ggtactggag tcgccagtat ctaccggggg ccatttgcag
      361 atgaaaattt taagcttaga cactcagctc caggcttgct ttccatggca aacagtggtc
      421 ccagtaccaa cggctgccag tttttcatca cctgctctaa gtgtgattgg ctagatggga
      481 agcacgtggt gtttggaaaa atcattgatg gacttctggt gatgagaaag attgagaatg
      541 ttcccacagg ccccaacaat aaacccaagc tgcctgtggt gatctcacag tgtggagaga
      601 tgtagtccag aggaagactg aatcagaccc tccacatctg ccattgcagg ccttcccttg
      661 ctcggggtga cgttcttgag taagataagc tggattggcc cctgtgtttg cttccctgcc
      721 tgctgctgcc ccatttgatc aaaagacctt ggaagtatca cagactcaga agccaagatt
      781 ttgtgtttaa gttttcaact gtaaataaag ttgttctttt tttttttttg gtt
//
LOCUS       XM_032602456             804 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase H (PPIH),
            transcript variant X2, mRNA.
ACCESSION   XM_032602456
VERSION     XM_032602456.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..804
                     /gene="PPIH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738752"
     CDS             72..605
                     /gene="PPIH"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase H isoform
                     X1"
                     /protein_id="XP_032458347.1"
                     /db_xref="GeneID:116738752"
                     /translation="MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFR
                     QFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKL
                     RHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTG
                     PNNKPKLPVVISQCGEM"
     misc_feature    93..602
                     /gene="PPIH"
                     /note="cyclophilin-type peptidylprolyl cis- trans
                     isomerases. This family contains eukaryotic, bacterial and
                     archeal proteins which exhibit a peptidylprolyl cis- trans
                     isomerases activity (PPIase, Rotamase) and in addition
                     bind the immunosuppressive drug...; Region: cyclophilin;
                     cl00197"
                     /db_xref="CDD:469651"
     misc_feature    order(267..272,285..287,438..440,444..446,468..470)
                     /gene="PPIH"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 cgaaaccctc agagcaggga ctgggttcgc cgtaaccccg cactcccgac ttctgcttcc
       61 gggtcggagc catggcggtg gcaaattcaa gccctgtcaa tcccgtggta ttttttgatg
      121 tcagcattgg cggccaggaa gttggccgca tgaagatcga gctatttgca gacgttgtgc
      181 ctaagacggc cgagaatttt aggcagttct gcactggaga attcagaaaa gatggggttc
      241 ccataggata caaagggagc accttccaca gggtcataaa agatttcatg attcagggtg
      301 gagattttgt taatggagat ggtactggag tcgccagtat ctaccggggg ccatttgcag
      361 atgaaaattt taagcttaga cactcagctc caggcttgct ttccatggca aacagtggtc
      421 ccagtaccaa cggctgccag tttttcatca cctgctctaa gtgtgattgg ctagatggga
      481 agcacgtggt gtttggaaaa atcattgatg gacttctggt gatgagaaag attgagaatg
      541 ttcccacagg ccccaacaat aaacccaagc tgcctgtggt gatctcacag tgtggagaga
      601 tgtagtccag aggaagactg aatcaggcct tcccttgctc ggggtgacgt tcttgagtaa
      661 gataagctgg attggcccct gtgtttgctt ccctgcctgc tgctgcccca tttgatcaaa
      721 agaccttgga agtatcacag actcagaagc caagattttg tgtttaagtt ttcaactgta
      781 aataaagttg ttcttttttt tttt
//
LOCUS       XM_032602465             858 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase H (PPIH),
            transcript variant X3, mRNA.
ACCESSION   XM_032602465
VERSION     XM_032602465.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..858
                     /gene="PPIH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116738752"
     CDS             72..605
                     /gene="PPIH"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase H isoform
                     X1"
                     /protein_id="XP_032458356.1"
                     /db_xref="GeneID:116738752"
                     /translation="MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFR
                     QFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKL
                     RHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTG
                     PNNKPKLPVVISQCGEM"
     misc_feature    93..602
                     /gene="PPIH"
                     /note="cyclophilin-type peptidylprolyl cis- trans
                     isomerases. This family contains eukaryotic, bacterial and
                     archeal proteins which exhibit a peptidylprolyl cis- trans
                     isomerases activity (PPIase, Rotamase) and in addition
                     bind the immunosuppressive drug...; Region: cyclophilin;
                     cl00197"
                     /db_xref="CDD:469651"
     misc_feature    order(267..272,285..287,438..440,444..446,468..470)
                     /gene="PPIH"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 cgaaaccctc agagcaggga ctgggttcgc cgtaaccccg cactcccgac ttctgcttcc
       61 gggtcggagc catggcggtg gcaaattcaa gccctgtcaa tcccgtggta ttttttgatg
      121 tcagcattgg cggccaggaa gttggccgca tgaagatcga gctatttgca gacgttgtgc
      181 ctaagacggc cgagaatttt aggcagttct gcactggaga attcagaaaa gatggggttc
      241 ccataggata caaagggagc accttccaca gggtcataaa agatttcatg attcagggtg
      301 gagattttgt taatggagat ggtactggag tcgccagtat ctaccggggg ccatttgcag
      361 atgaaaattt taagcttaga cactcagctc caggcttgct ttccatggca aacagtggtc
      421 ccagtaccaa cggctgccag tttttcatca cctgctctaa gtgtgattgg ctagatggga
      481 agcacgtggt gtttggaaaa atcattgatg gacttctggt gatgagaaag attgagaatg
      541 ttcccacagg ccccaacaat aaacccaagc tgcctgtggt gatctcacag tgtggagaga
      601 tgtagtccag aggaagactg aatcagactg aatttaagaa ggcagcaact ggcgcacttg
      661 tccataccca gcagatagta gacgcttaat aaagaacgaa ctaaggtgga cgacttcatc
      721 tacatcatgc ggcagcctca attacaaatc gtttgtgaaa cgtgcatagt aatccctgtt
      781 tcacatggct gttttaagaa taaaatgcac gaaaaatgcc tagcgtgctc aataaacgtg
      841 aggtgaaatt aaacctga
//
LOCUS       XM_032602472             773 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase H (PPIH),
            transcript variant X4, mRNA.
ACCESSION   XM_032602472
VERSION     XM_032602472.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..773
                     /gene="PPIH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116738752"
     CDS             96..551
                     /gene="PPIH"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase H isoform
                     X2"
                     /protein_id="XP_032458363.1"
                     /db_xref="GeneID:116738752"
                     /translation="MKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK
                     DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITC
                     SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM"
     misc_feature    96..542
                     /gene="PPIH"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; Region:
                     cyclophilin_ABH_like; cd01926"
                     /db_xref="CDD:238907"
     misc_feature    order(213..218,231..233,384..386,390..392,414..416)
                     /gene="PPIH"
                     /note="active site"
                     /db_xref="CDD:238907"
ORIGIN      
        1 gtgaggtcct ggcagccacc cagcccaccg ccgaagggaa agtgcacggg gtctgacagg
       61 cagatttcat cccttcccca ggggaagttg gccgcatgaa gatcgagcta tttgcagacg
      121 ttgtgcctaa gacggccgag aattttaggc agttctgcac tggagaattc agaaaagatg
      181 gggttcccat aggatacaaa gggagcacct tccacagggt cataaaagat ttcatgattc
      241 agggtggaga ttttgttaat ggagatggta ctggagtcgc cagtatctac cgggggccat
      301 ttgcagatga aaattttaag cttagacact cagctccagg cttgctttcc atggcaaaca
      361 gtggtcccag taccaacggc tgccagtttt tcatcacctg ctctaagtgt gattggctag
      421 atgggaagca cgtggtgttt ggaaaaatca ttgatggact tctggtgatg agaaagattg
      481 agaatgttcc cacaggcccc aacaataaac ccaagctgcc tgtggtgatc tcacagtgtg
      541 gagagatgta gtccagagga agactgaatc agaccctcca catctgccat tgcaggcctt
      601 cccttgctcg gggtgacgtt cttgagtaag ataagctgga ttggcccctg tgtttgcttc
      661 cctgcctgct gctgccccat ttgatcaaaa gaccttggaa gtatcacaga ctcagaagcc
      721 aagattttgt gtttaagttt tcaactgtaa ataaagttgt tctttttttt ttt
//
LOCUS       XM_032602483             734 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidylprolyl isomerase H (PPIH),
            transcript variant X5, mRNA.
ACCESSION   XM_032602483
VERSION     XM_032602483.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..734
                     /gene="PPIH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116738752"
     CDS             72..512
                     /gene="PPIH"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase H isoform
                     X3"
                     /protein_id="XP_032458374.1"
                     /db_xref="GeneID:116738752"
                     /translation="MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFR
                     QFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNANSGPSTNGCQFFITCSKCDW
                     LDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM"
     misc_feature    93..509
                     /gene="PPIH"
                     /note="cyclophilin-type peptidylprolyl cis- trans
                     isomerases. This family contains eukaryotic, bacterial and
                     archeal proteins which exhibit a peptidylprolyl cis- trans
                     isomerases activity (PPIase, Rotamase) and in addition
                     bind the immunosuppressive drug...; Region: cyclophilin;
                     cl00197"
                     /db_xref="CDD:469651"
     misc_feature    order(270..272,276..278,285..290,294..296,315..320,
                     345..347,351..353,375..380,390..392)
                     /gene="PPIH"
                     /note="active site"
                     /db_xref="CDD:238194"
ORIGIN      
        1 cgaaaccctc agagcaggga ctgggttcgc cgtaaccccg cactcccgac ttctgcttcc
       61 gggtcggagc catggcggtg gcaaattcaa gccctgtcaa tcccgtggta ttttttgatg
      121 tcagcattgg cggccaggaa gttggccgca tgaagatcga gctatttgca gacgttgtgc
      181 ctaagacggc cgagaatttt aggcagttct gcactggaga attcagaaaa gatggggttc
      241 ccataggata caaagggagc accttccaca gggtcataaa agatttcatg attcagggtg
      301 gagattttgt taatgcaaac agtggtccca gtaccaacgg ctgccagttt ttcatcacct
      361 gctctaagtg tgattggcta gatgggaagc acgtggtgtt tggaaaaatc attgatggac
      421 ttctggtgat gagaaagatt gagaatgttc ccacaggccc caacaataaa cccaagctgc
      481 ctgtggtgat ctcacagtgt ggagagatgt agtccagagg aagactgaat cagaccctcc
      541 acatctgcca ttgcaggcct tcccttgctc ggggtgacgt tcttgagtaa gataagctgg
      601 attggcccct gtgtttgctt ccctgcctgc tgctgcccca tttgatcaaa agaccttgga
      661 agtatcacag actcagaagc caagattttg tgtttaagtt ttcaactgta aataaagttg
      721 ttcttttttt tttt
//
LOCUS       XM_032602496            2204 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription factor AP-2 epsilon
            (TFAP2E), mRNA.
ACCESSION   XM_032602496
VERSION     XM_032602496.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2204
                     /gene="TFAP2E"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 21 Proteins, and 13%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116738771"
     CDS             267..1592
                     /gene="TFAP2E"
                     /codon_start=1
                     /product="transcription factor AP-2-epsilon"
                     /protein_id="XP_032458387.1"
                     /db_xref="GeneID:116738771"
                     /translation="MLVHTYSAMERPDGLGAAASGARLSSLPQAAYGPAPQLCHTPTA
                     AAADFQPPYFPPPYPQPPLTYGQASDAAAAFPHLAGDPYGGLAPLAQPQPPQAAWAAP
                     RAAARAHDEPPGLLAPPARALGLDPRRDYTAAVPRLLHGLADGAHSLADAPFGLPGLA
                     VPPSLEDLQAMDEPGMSLLDQSVIKKVPIPSKASSLSALSLAKDSLVGGITNPSEVFC
                     SVPGRLSLLSSTSKYKVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRCLRERLE
                     KIGLNLPAGRRKAANVTLLTSLVEGEAVHLARDFGYVCETEFPAKAAAEYLCRQHADP
                     GELHSRKHMLLAAKQICKEFADLMAQDRSPLGNTRPALILEPGVQSCLTHFSLITHGF
                     GGPAICAALTAFQNYLLESLKGLDKMFLSSAGSGHGDTKASEKDAKLRK"
     misc_feature    915..1499
                     /gene="TFAP2E"
                     /note="Transcription factor AP-2; Region: TF_AP-2;
                     pfam03299"
                     /db_xref="CDD:460877"
ORIGIN      
        1 agaagggcgg gcgctgggcg cccattgacc gacttttcca agtgcgatca gcgcccgtcc
       61 ggcctacatc ccgcccccat ggacccgccc gggggcgccc actgctgagg acccgatgcc
      121 tattgggctc cgggctaggt tgcaccctgc caccgcaaag tgacccccca cgggccgtac
      181 aggctcccag cacctcttcc cgcagagctc gccgtcgggc gagggctcca ccgccgccac
      241 gcctcgcgcc ccgcgctgcc cgccccatgc tggtgcacac ttactccgcc atggagcgcc
      301 ccgacgggct gggcgcagcg gctagcgggg cccgcttgtc gtcgctgccc caagcggcct
      361 acgggccggc gccgcagctc tgccacacgc cgaccgccgc cgccgctgac ttccagccgc
      421 cctacttccc gccgccctac ccgcagccgc cactgaccta cggccaggcg tccgacgccg
      481 ccgccgcctt tccccatctg gccggagacc cgtacggtgg cctggcgccc ctggcacagc
      541 cgcagcctcc gcaggctgcc tgggccgcgc cccgcgccgc cgcccgcgcc cacgacgagc
      601 cgcccggcct gctggcgcct cccgcccgcg ccctgggcct cgacccgcgc cgcgactaca
      661 ccgccgccgt gccgcggctc ctgcacggcc tggcagacgg cgcgcacagc ctggccgacg
      721 cgcccttcgg ccttcccggg ctggcggtgc cgccgagcct ggaggacctg caggccatgg
      781 acgagccagg aatgagcctc ctggaccagt ccgtgatcaa gaaagtcccc atcccctcca
      841 aagccagcag cctttcggcc ctctcattgg ccaaagacag cttggttggc ggcatcacga
      901 accccagtga ggtcttctgc tccgtgccag gccggctgtc tctgctcagc tcgacatcca
      961 agtacaaggt gacagtgggg gaggtccagc ggcgactctc acctcccgag tgcctcaatg
     1021 cctctctcct gggtggtgtc cttcgcaggg ccaagtccaa gaatgggggc cggtgcctgc
     1081 gggaacggct ggagaagatt gggctcaatt tgccagctgg tcgtcgcaag gccgccaatg
     1141 tgacgctgct gacttcacta gtagagggag aggctgtaca cctggcccga gactttggct
     1201 acgtctgtga gaccgagttc ccagccaagg cagctgccga gtacctgtgc cgccagcatg
     1261 ctgacccggg ggaactgcac agccgcaagc acatgctgct ggccgccaag cagatctgca
     1321 aggagtttgc agacttgatg gcgcaggacc gttcaccgct ggggaacacc cgcccagcac
     1381 tcatcctgga gcccggagtg cagagctgcc tgacacactt tagcctcatc acccacggct
     1441 tcggcgggcc tgccatctgt gctgccctca ctgccttcca gaactacttg ctggagtcac
     1501 tcaaggggct ggacaagatg tttctaagca gtgcaggcag tgggcatggt gacaccaagg
     1561 cttcggagaa ggatgccaaa cttcggaagt aactgcttcc cccaccccat ccctaagggg
     1621 ctcccaaggt ctgaaatgag gtctttgctc ctgggggtgg gcctgacagg attaaaaggt
     1681 ggggtcggag tcaggccaga aagagaacat tcctccagaa acccatgagt taggggtctg
     1741 ggctggagta aggggaggtg gcctctgtgg tggtttgtag ataagggccc aggcgtctgc
     1801 ctcgcacgtg caattttctg acccttgact gctgagaaag gcttggacag gaaattgcat
     1861 ggaaaagcct ggttcttggg gccagcgctg cccattaggg tgatgggtgc tcctagaggc
     1921 caaggccttg ctgtttttac taacagcagg agaggaatca acaaaccagg tgctactgag
     1981 gagttggtgc ccttcatccc agaatcgccc acccccagaa aaggggtgct ggcaggaggc
     2041 cccagtgggc tctttggacc cctgccactc ttgtaaagaa gtgggcagga ggggccctca
     2101 aggaacagag aagataaaca caaattggat aacttgaatc caggctgcat ttcagtcctg
     2161 ttgctgtgtc ctatttattt atgttgtaat ttaaagtttt aaaa
//
LOCUS       XM_032602508             851 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proteasome 20S subunit beta 2 (PSMB2),
            mRNA.
ACCESSION   XM_032602508
VERSION     XM_032602508.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-209               VOSU01000011.1     28770048-28770256   c
            210-332             VOSU01000011.1     28765230-28765352   c
            333-349             VOSU01000011.1     28762330-28762346   c
            350-350             "N"                1-1
            351-403             VOSU01000011.1     28762277-28762329   c
            404-566             VOSU01000011.1     28737036-28737198   c
            567-616             VOSU01000011.1     28735470-28735519   c
            617-851             VOSU01000011.1     28732902-28733136   c
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..851
                     /gene="PSMB2"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 Proteins, and 91% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:116738777"
     CDS             119..724
                     /gene="PSMB2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: proteasome subunit beta
                     type-2"
                     /protein_id="XP_032458399.1"
                     /db_xref="GeneID:116738777"
                     /translation="MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILL
                     LCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPXAAANFTRRNLADYLRSRTPYHVNL
                     LLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISREKAVELL
                     RKCLEELQKRFILNLPAFSVRIIDKNGIHDLDNISFPKQGS"
     misc_feature    119..694
                     /gene="PSMB2"
                     /note="proteasome beta type-2 subunit. The 20S proteasome,
                     multisubunit proteolytic complex, is the central enzyme of
                     nonlysosomal protein degradation in both the cytosol and
                     nucleus. It is composed of 28 subunits arranged as four
                     homoheptameric rings that...; Region:
                     proteasome_beta_type_2; cd03758"
                     /db_xref="CDD:239727"
ORIGIN      
        1 cgctagcgag gtctgcgtcg cgcgcatctt cgctcggttg tgctgtctca ccggtgaggc
       61 cgagaagccc gccagtcccg ggctccatcg aacctgcagt ccccggcctc ctgccacaat
      121 ggagtacctc atcggcatcc agggccctga ctatgtcctt gtcgcctccg accgggtggc
      181 cgctagcaat attgtccaga tgaaggacga tcatgacaag atgtttaaga tgagtgaaaa
      241 aatcttactc ctatgtgttg gagaggctgg agacactgta cagtttgcag aatatattca
      301 gaaaaacgtg cagctctata agatgcgaaa tggttatgaa ttgtctccan cagcagcagc
      361 taatttcact cgccgaaacc tggctgacta tcttcggagt cggaccccat atcacgtcaa
      421 cctcctcctg gctggctatg atgagcatga gggtccagcg ctctactaca tggactacct
      481 ggcagccttg gcaaaagccc cttttgcagc ccacggctat ggtgccttcc tgactctcag
      541 tatcctggac cggtattaca caccaactat ctcacgtgag aaggcagtgg agcttcttag
      601 gaaatgtctg gaggagctcc agaaacgctt cattctgaat ctgccagcct tcagtgttcg
      661 aatcattgac aagaatggca tccacgacct ggacaacatt tccttcccta aacagggctc
      721 ctaacgtcat gccctccctc ccacttgcca gggaactttt tttgatgggc tcctttattt
      781 ttttctactc ttttgatgtg tgctctccat agatggttat ttcagaataa agctgactat
      841 ggataaattg a
//
LOCUS       XM_032602538            4709 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SEC22 homolog B, vesicle trafficking
            protein (SEC22B), mRNA.
ACCESSION   XM_032602538
VERSION     XM_032602538.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4709
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4709
                     /gene="SEC22B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 19 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738790"
     CDS             154..801
                     /gene="SEC22B"
                     /codon_start=1
                     /product="vesicle-trafficking protein SEC22b"
                     /protein_id="XP_032458429.1"
                     /db_xref="GeneID:116738790"
                     /translation="MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKL
                     NEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKK
                     VPTVSRPYSFIEFDTYIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRG
                     EALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAVFFIMLIVYVRFWWL"
     misc_feature    160..531
                     /gene="SEC22B"
                     /note="longin domain; Region: Longin; cd14824"
                     /db_xref="CDD:341428"
     misc_feature    order(160..162,250..252,259..261,319..321,328..330,
                     334..336)
                     /gene="SEC22B"
                     /note="lipid binding site [chemical binding];
                     lipid-binding site"
                     /db_xref="CDD:341428"
     misc_feature    order(196..198,205..207,211..213,253..255,265..267,
                     502..504,514..516,523..525)
                     /gene="SEC22B"
                     /note="Sec22 interface [polypeptide binding]; other site"
                     /db_xref="CDD:341428"
     misc_feature    order(316..318,325..327,385..387,397..399)
                     /gene="SEC22B"
                     /note="VARP interface [polypeptide binding]; other site"
                     /db_xref="CDD:341428"
     misc_feature    547..738
                     /gene="SEC22B"
                     /note="SNARE motif of SEC22; Region: R-SNARE_SEC22;
                     cd15866"
                     /db_xref="CDD:277219"
     misc_feature    order(553..561,565..570,574..591,595..603,607..609,
                     616..621,625..633,637..654,658..675,679..696,700..717,
                     721..729)
                     /gene="SEC22B"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277219"
     misc_feature    628..630
                     /gene="SEC22B"
                     /note="zero layer; other site"
                     /db_xref="CDD:277219"
ORIGIN      
        1 gagcttgttt ccggccacct cagcgggaat cggagacgcg agcagctggg tctttgggaa
       61 ctgaggtaga ggcataactg ttgtcgcggc ggagcaagtc aagacgcacc tacggccgtc
      121 cgggccagtg ttgagtttcc gtagcctgtg aagatggtgt tgctcacgat gatcgcccga
      181 gtggcggacg ggctcccgtt ggccgcctcg atgcaggagg acgaacagtc tggccgggac
      241 cttcaacagt accagagtca ggctaagcaa ctctttcgaa agttgaatga acagtcccct
      301 accagatgca ccttggaagc tggtgccatg acttttcact acattattga acagggggtg
      361 tgttatttgg ttctgtgtga agctgccttc cctaaaaagt tggcttttgc ctacctagaa
      421 gatttacatt cagagtttga tgaacagcat gggaagaagg tgccaactgt gtctagaccc
      481 tattccttta ttgagttcga tacctacatt cagaaaacca agaagcttta cattgacagt
      541 cgtgctcgga gaaacctagg ctccatcaac actgaattgc aagatgtgca gaggatcatg
      601 gtggccaata ttgaagaagt actacaacgg ggagaagcac tctcagcatt ggattcgaag
      661 gctaacaatt tgtccagtct gtccaagaaa taccgccagg atgcgaagta cttgaacatg
      721 cgttccactt acgccaaact tgcagcagta gctgtatttt tcatcatgtt aatagtgtat
      781 gtgagattct ggtggctgtg aagtagtgaa tccagtcact ggcaaggaag aacctagaac
      841 ccagcaggtg tatgttttca ggaagctgag ctcacagaga tgcgtattag aatccaagtg
      901 gaacttctgc ctctaaagac cttgcaagga aagacatgtc ctgaaaatga aagattacgc
      961 ctcatttaat gaagcttagc cctatgtaga aagtgtcttt tgggggcaga ggctttctct
     1021 gggtgctaag ccatatatgt tagggaacag tagattgttt tatttgttta tttccctccc
     1081 agtgttttac atttttaaaa cagcactgac tgggcattct catctctaat ggactcgtca
     1141 gtgaggtttg gcttaaccaa cctgtactag caacagtctg aaatcccttc agagaaggca
     1201 gccctttgga aagtttttgg actctgttta atcaacattc cgtttgttgg tgacacttgt
     1261 gatttttcag gaatctgagt tgttgatggc cttttaaaca agactccagt atgtgaaggt
     1321 taattgctgt gctgcaagag atcctgtcta ttggcccctg taggaagtta acctttgttg
     1381 ttttccattt atgatgtttt gcttattgca caattgcttt agggttaaat gaattatatt
     1441 gatgccttga aattatagca ctccgtgatt aagaagctaa aatgttttct gtcatttact
     1501 ccttaaaaga cttaaatgtt ttgtttggga cattcttaat tttatttttc cgcatctggt
     1561 ttatattaat ctaagagtga atgtagcata ctgatagcca gaggcccctg acttagtgac
     1621 aaagagaggc cggctcatga ctacagcttt gtcctgccct tttctcactt tttctccact
     1681 acgattttcc ccactcttcc tcctgccaca atttgctaac attttttaaa ttcctctatg
     1741 tccaatagtt tcatgtccct gtcaggatat ccccaaattt caaaatggaa aatattcagt
     1801 tgcgtagttg attaaattga aatttttcag agcaactact caaactacta aacacattta
     1861 tctgataaaa tctgagagta ccttgtatct gcttcagtta tgtaattctc tgagaatatt
     1921 ccagaaatag ctaactcatt tacagtagct tctattaaca aataaaagta cctatgattt
     1981 ttcccttttt tgctcaggga taatgggaat ttccttttac cttctgaggt agaatttttt
     2041 taaatgggga gaataggcct tttaaatatt gccacaaggg tctacaatat aacctataat
     2101 tactacacat actgcaaaca tttctttaaa ttgtacagga aaatgagcct acttcttaaa
     2161 atctttggaa agaactttaa ccagtaagca attttataac tcaggatcat caaacctact
     2221 gttctgattc ctgatagaga aaaaaaattc tatttcttta aaacaaggca aggagaaatg
     2281 cttattttat tcctgataat ttacagaact agaataaaat tttttctttc cattttggac
     2341 ctatgtctgc caattggagt tttgtgcatg aaataagaag ttacttttta tagtgaataa
     2401 gtgctttgaa gtccctaaaa gtcttatcct aagtaatgat attggtaata aaagcctttg
     2461 aaaggctgaa aacctaagta ttggtaccat agcacttggt acttctgtag gagtggagag
     2521 tggcagctcg ttgagagttg catgctgcaa ccaagtagtc agcaatgaaa taaatacttc
     2581 tagaatgttc cctttagtgt gaagttttgt tatctagtta atttacatgc acatcttctt
     2641 ctatagatac acttctacct aaactcagtg ggttaattaa aaaatgagtt ggggtggggg
     2701 atgataaaca aagggataag aaagtagttt atgattatga tggtagaaaa tgaaagaaca
     2761 ggactgtcat aatatgactc ctgcttctgt tccttattgg aggaagtggg aagatctgac
     2821 tagatgaaat gaaccagcaa tcaaacaggt atctaaaata gaatgtgata aatactgttc
     2881 agggttatcg ggggcacatt aaaaaaggac acctaattta ctgtgggaag gggtgtggta
     2941 agagaaggag agtgggattt cccagacgga gtcaatggct tgtgaagagt catgagttaa
     3001 aagagtgagg cccatttggg ggatcatgta gcttggttca acttaactca taggttaagt
     3061 gtaggcaact gagacttgag gaagaagtag acggtacact gtcatgcaag tcattcagac
     3121 tatactaaca tcagtggcaa gagatggcat cagatttata acttcaaatg atcattctga
     3181 ccatgctata aaagatatat tagagaggaa taagcctgaa agtagggaga tgaaactaag
     3241 gagccatcag agtagaatga gacatagaca ggttttaagt tattttcaag aaaggaataa
     3301 tcccacatac tgaaatattt acacaatgct ttctttgtta ggagcttatt ttaattctca
     3361 tgttgacatt ttgaagtaaa tactgttcac accatgtgaa tgaagaaact ttactgcact
     3421 gaggcacaga agagttgagt aatttatcca aagatgcaga gctagcaagt gacagagcta
     3481 agatttgaac ctagacagtt tgactccaga gtctgtgctt ttctccacca tactatacca
     3541 ccaagaggtc aaatcaaaca agtaccacaa aatgtatttt gaatttaaca attaggagca
     3601 taatcataca agcagagtaa tttcagggca gtagagacac aagtcagatt gcagtgggtt
     3661 gatgattgtg tgaaccacta ggaggtaaag acgttgaact actctttaga agtagctttt
     3721 ttggttatgg tgctgaactt cataacatgt tttaattaag aaatctcaca agtgttaaca
     3781 tagcaatatt tggcacattg tatgtacatc tcttcattta agtgtctaac tggctcttaa
     3841 gctttttgga aaacctttga atatctggtg aaatgtatgt gcctttaccc cagaacaatg
     3901 ttcatgtgta catgtatacc aagtatcaca aactatgtca gggttttcaa gaactctata
     3961 aagcctgttc atgacctggt ggtccatgat cccccagcta agaactccaa atatagagga
     4021 tgtggaactc aaaggaaaga atccagaaac cttgaaaact gtacagctga tgtgaactag
     4081 aaaaattcta cagtttgaac taactttgtg gatgagattc attcttaaaa aattgtgtaa
     4141 aaaaattcta tcaaacattt ttggatcttg ttctacagaa aaaaatttgg tccagttcct
     4201 caaaatcaaa atcaaggatc ttaaattttt tatttctact tttatcagta ggaagtcttg
     4261 caaaagcaag ttaagaaggc aaatggataa tcatttcttc atacatagta tttaataata
     4321 catgtatgag aaaacatctc aatttaaatt cccatcttat tgggagtttt catgacctaa
     4381 gggcttgaat gttgatggac acacaattag cagaactgac tgagccccat ctggttgtct
     4441 ttttagctca gcaaaaaggc aaagagcagt ggttgtaaag atgttactac tgtaaatgca
     4501 cattaactaa ttggaccaaa taaatagctt gtacttttta aaagtcccaa agaaaaattt
     4561 gtagcatgtg tgacatagtt tgaggtagaa ggggcaaatt gagtctcaca tcctattaat
     4621 cattacagac agcgttgacc caacagtata aaactatctt gagcaattta atcactccat
     4681 tctaataaag tttatttcaa gtgctgtaa
//
LOCUS       XM_032602551             447 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CDP-diacylglycerol--inositol
            3-phosphatidyltransferase-like (LOC116738796), mRNA.
ACCESSION   XM_032602551
VERSION     XM_032602551.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..447
                     /gene="LOC116738796"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 22% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116738796"
     CDS             1..447
                     /gene="LOC116738796"
                     /codon_start=1
                     /product="CDP-diacylglycerol--inositol
                     3-phosphatidyltransferase-like"
                     /protein_id="XP_032458442.1"
                     /db_xref="GeneID:116738796"
                     /translation="MLCCPLTASSFYLLSGFLDAFDGHAARVLNQGTGFGAMLAMWAD
                     CCSTMCLLVNLALLYPHATLLFQLSVSLDVASHWLHLHSSVVRGSESHKVINLSGNPV
                     LCILYTSRPALFILGAGNEPFYCLLLRHGPLVGFVGLFRMCLWITT"
     misc_feature    13..>225
                     /gene="LOC116738796"
                     /note="Phosphatidylglycerophosphate synthase [Lipid
                     transport and metabolism]; Region: PgsA; COG0558"
                     /db_xref="CDD:440324"
ORIGIN      
        1 atgctctgct gccccctcac ggcctcctcc ttctacctgc tcagtggatt tctggacgct
       61 tttgatggac acgctgctcg agtccttaat caagggaccg ggtttggggc catgctggcc
      121 atgtgggcag actgctgctc cacaatgtgt ctgctggtca acctggccct actgtaccct
      181 cacgccaccc ttctcttcca gctcagcgtg agcttggatg tggccagcca ctggctgcac
      241 ctccacagtt ctgtggtccg aggcagtgaa agccacaagg tgattaacct gtctggaaat
      301 ccagtgcttt gcatcctcta cacctccaga cctgctctat ttatcctggg tgctggaaat
      361 gagcccttct actgccttct cctccgtcat ggacctttag ttggctttgt gggtcttttc
      421 cgaatgtgcc tctggatcac cacctga
//
LOCUS       XM_032602586            2572 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X1, mRNA.
ACCESSION   XM_032602586
VERSION     XM_032602586.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2572
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             417..2093
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X1"
                     /protein_id="XP_032458477.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEVFKDNCCKRE
                     VLNLYVFCKNAPGCNAKVILGRYQDHLQHCLFQNVQCSNESCREPVLRKDLKEHLSAD
                     CPFREEKCLYCKKDVVVINLQNHEENLCPEYPVSCPNKCLQIIPRTEVDEHLAVCPEA
                     EQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLLVLEKNFRLEEQISDLYKSLEQKES
                     KIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQVLASHIDKSAWLEVQVRQLLQMAN
                     QQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVVLEGETNKHDAHINIHKAQLNKNEE
                     RFKLLESACYNGKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNG
                     DGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKRNHIMETFKADPNSSS
                     FKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVDLTDLEDL"
     misc_feature    531..698
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(540..545,585..587,591..605)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    798..965
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    963..1139
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    1191..>1514
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1626..2069
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1635..1637,1641..1643,1725..1730,1821..1823,
                     1830..1832,1881..1883)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1749..1751,1755..1757,1800..1802,1917..1919,
                     1968..1979)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 gccatcgcag ccctggagtc ctcgcgcgcc tgcagccggg agccggccga acccccgccc
       61 accggcccac acgtgagtcc agcccactcg ccgcccgggg cggctgcgcc gcggggattg
      121 agccccacgc tgtaggactg gagtgagggg accgaggagt atttttcggc tcatcccatt
      181 tactttgaaa cagaaagcgc cgcggcggca ggagcccccc gccgggctgc ggggacccgg
      241 gcctggctgc ccgtcccact cgagcccgca gtgctttgct gcactcccag aggaaatgag
      301 gaaccagagg tctcctgaca gcttggagag acgtcacact tctcttcaaa ggagttaaaa
      361 ccatacccac atcattctcc atcccgtgtc caagaaaacc ctcttctgca aaagtaatgg
      421 cttgttctga ggagcaagga ggtgtcccct gtggcttcat ccgccagaac tctggtaact
      481 ccacgtcttt ggactttgag ccagatgcag agtaccagtt tgtggagcag ctggaagagc
      541 gctacagatg tgccttctgc cgctcagtgc ttcacaaccc ccaccagacg ggctgtgggc
      601 accgcttctg ccagcactgc atcctgtccc tgagagaatt aaacgcagtc ccactctgcc
      661 ctgtagataa ggaggtgatc aaatctcagg aggtgtttaa agacaattgc tgcaaaagag
      721 aagtcctcaa tttatatgta ttttgcaaaa acgctcctgg atgtaatgcc aaggttattc
      781 tgggacgata ccaggaccac cttcagcact gcttattcca aaatgtgcag tgctctaatg
      841 agagctgtcg ggagccagtc cttcgcaaag atctgaaaga gcatttgagt gcagactgtc
      901 cgtttcgaga ggaaaaatgc ctttattgca aaaaggatgt ggtggtcatc aatctacaga
      961 atcacgagga aaacttgtgt cctgagtacc cagtatcttg tcccaacaag tgtttgcaga
     1021 ttattccaag aactgaggtg gatgaacacc ttgctgtgtg tcctgaagct gaacaagact
     1081 gtcctttcaa gcactatggc tgtactgtaa agaataaacg aggaaacctg caggagcatg
     1141 aacattcagc cttacgggac cacatgcttc tggttttaga aaagaacttc cggttagaag
     1201 aacagatttc tgacttatat aagagcctag aacaaaaaga aagtaaaatc cagcagctag
     1261 cagcaaccgt gaacaaattc gaaaaggagt tcaagcagtt tgcacagttg tttggcaaaa
     1321 atggaacttt cctctcaaat atacaggttc ttgccagtca cattgacaag tccgcttggc
     1381 tagaagttca ggtgcgtcag ttattacaaa tggctaacca gcaacaaagt aaatttgatc
     1441 tgaggccttt ggtggaagcg attgatacag tgaaacagaa aatcaccctg ctagaaaccc
     1501 atgatcaaag attagttgtt ttggaagggg agactaacaa acatgatgcc cacattaata
     1561 ttcataaagc gcagctgaat aaaaacgaag agcgatttaa gctgctagaa agtgcctgct
     1621 ataacggaaa gctcatctgg aaggtcacag actacaagct gaagaagaag gaggcgctgg
     1681 atggacacac agtatccatc ttcagccagc ccttctacac cagccggtgt ggctacaggc
     1741 tctgtgctag agcgtacctg aatggggacg ggtccgggaa gggtacgcac ctgtcgttgt
     1801 actttgtggt aatgcgaggg gagtttgatt cactgttgca gtggccattc aggcagaggg
     1861 tgaccctgat gcttttggac caaagtggca aaaggaacca cattatggag accttcaagg
     1921 ctgaccccaa tagcagcagc tttaaaagac ctgacgggga gatgaacatt gcctctggct
     1981 gtccacgctt cgtggctcat tccactttgg agaatgccaa gaacacctac attaaagatg
     2041 acaccctgtt cttgaaagtg gctgtggatt taactgacct ggaggatctc taatcactgc
     2101 ttctggggtg ataaaaggac tccttgaatc cagaaccttt ggttaatgta gtgactgaat
     2161 gtaggctcga cacacacttg tatttggctc tttgccctta atgtttgaag tcattttgag
     2221 atttctcaag tgctgtcttc tttttacatt ttattctgtc ccagtttgaa actgacaata
     2281 cttagaatat cttctcatta tttatatttt tatatctctt gaaagatgtt aattttctta
     2341 aaggtaaggt ctggggcata cctcttttac tggtgcttag tgtggggtct cagggtgggc
     2401 cctctataat attaaatgtc attgaggaca cagaagtaga atttccagtt gaaaatgctt
     2461 tggttttttt tttttttttt tttttttttt ttttttttgc ggtacgcggg cctctcactg
     2521 ctgtggcatc ccccgttgcg gagcacaggc tccggacgcg caggctcagc ag
//
LOCUS       XM_032602594            2569 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X2, mRNA.
ACCESSION   XM_032602594
VERSION     XM_032602594.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2569
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             414..2090
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X1"
                     /protein_id="XP_032458485.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEVFKDNCCKRE
                     VLNLYVFCKNAPGCNAKVILGRYQDHLQHCLFQNVQCSNESCREPVLRKDLKEHLSAD
                     CPFREEKCLYCKKDVVVINLQNHEENLCPEYPVSCPNKCLQIIPRTEVDEHLAVCPEA
                     EQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLLVLEKNFRLEEQISDLYKSLEQKES
                     KIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQVLASHIDKSAWLEVQVRQLLQMAN
                     QQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVVLEGETNKHDAHINIHKAQLNKNEE
                     RFKLLESACYNGKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNG
                     DGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKRNHIMETFKADPNSSS
                     FKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVDLTDLEDL"
     misc_feature    528..695
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(537..542,582..584,588..602)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    795..962
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    960..1136
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    1188..>1511
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1623..2066
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1632..1634,1638..1640,1722..1727,1818..1820,
                     1827..1829,1878..1880)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1746..1748,1752..1754,1797..1799,1914..1916,
                     1965..1976)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 gccatcgcag ccctggagtc ctcgcgcgcc tgcagccggg agccggccga acccccgccc
       61 accggcccac acgtgagtcc agcccactcg ccgcccgggg cggctgcgcc gcggggattg
      121 agccccacgc tgtaggactg gagtgagggg accgaggagt atttttcggc tcatcccatt
      181 tactttgaaa cagaaagcgc cgcggcggca ggagcccccc gccgggctgc ggggacccgg
      241 gcctggctgc ccgtcccact cgagcccgtg ctttgctgca ctcccagagg aaatgaggaa
      301 ccagaggtct cctgacagct tggagagacg tcacacttct cttcaaagga gttaaaacca
      361 tacccacatc attctccatc ccgtgtccaa gaaaaccctc ttctgcaaaa gtaatggctt
      421 gttctgagga gcaaggaggt gtcccctgtg gcttcatccg ccagaactct ggtaactcca
      481 cgtctttgga ctttgagcca gatgcagagt accagtttgt ggagcagctg gaagagcgct
      541 acagatgtgc cttctgccgc tcagtgcttc acaaccccca ccagacgggc tgtgggcacc
      601 gcttctgcca gcactgcatc ctgtccctga gagaattaaa cgcagtccca ctctgccctg
      661 tagataagga ggtgatcaaa tctcaggagg tgtttaaaga caattgctgc aaaagagaag
      721 tcctcaattt atatgtattt tgcaaaaacg ctcctggatg taatgccaag gttattctgg
      781 gacgatacca ggaccacctt cagcactgct tattccaaaa tgtgcagtgc tctaatgaga
      841 gctgtcggga gccagtcctt cgcaaagatc tgaaagagca tttgagtgca gactgtccgt
      901 ttcgagagga aaaatgcctt tattgcaaaa aggatgtggt ggtcatcaat ctacagaatc
      961 acgaggaaaa cttgtgtcct gagtacccag tatcttgtcc caacaagtgt ttgcagatta
     1021 ttccaagaac tgaggtggat gaacaccttg ctgtgtgtcc tgaagctgaa caagactgtc
     1081 ctttcaagca ctatggctgt actgtaaaga ataaacgagg aaacctgcag gagcatgaac
     1141 attcagcctt acgggaccac atgcttctgg ttttagaaaa gaacttccgg ttagaagaac
     1201 agatttctga cttatataag agcctagaac aaaaagaaag taaaatccag cagctagcag
     1261 caaccgtgaa caaattcgaa aaggagttca agcagtttgc acagttgttt ggcaaaaatg
     1321 gaactttcct ctcaaatata caggttcttg ccagtcacat tgacaagtcc gcttggctag
     1381 aagttcaggt gcgtcagtta ttacaaatgg ctaaccagca acaaagtaaa tttgatctga
     1441 ggcctttggt ggaagcgatt gatacagtga aacagaaaat caccctgcta gaaacccatg
     1501 atcaaagatt agttgttttg gaaggggaga ctaacaaaca tgatgcccac attaatattc
     1561 ataaagcgca gctgaataaa aacgaagagc gatttaagct gctagaaagt gcctgctata
     1621 acggaaagct catctggaag gtcacagact acaagctgaa gaagaaggag gcgctggatg
     1681 gacacacagt atccatcttc agccagccct tctacaccag ccggtgtggc tacaggctct
     1741 gtgctagagc gtacctgaat ggggacgggt ccgggaaggg tacgcacctg tcgttgtact
     1801 ttgtggtaat gcgaggggag tttgattcac tgttgcagtg gccattcagg cagagggtga
     1861 ccctgatgct tttggaccaa agtggcaaaa ggaaccacat tatggagacc ttcaaggctg
     1921 accccaatag cagcagcttt aaaagacctg acggggagat gaacattgcc tctggctgtc
     1981 cacgcttcgt ggctcattcc actttggaga atgccaagaa cacctacatt aaagatgaca
     2041 ccctgttctt gaaagtggct gtggatttaa ctgacctgga ggatctctaa tcactgcttc
     2101 tggggtgata aaaggactcc ttgaatccag aacctttggt taatgtagtg actgaatgta
     2161 ggctcgacac acacttgtat ttggctcttt gcccttaatg tttgaagtca ttttgagatt
     2221 tctcaagtgc tgtcttcttt ttacatttta ttctgtccca gtttgaaact gacaatactt
     2281 agaatatctt ctcattattt atatttttat atctcttgaa agatgttaat tttcttaaag
     2341 gtaaggtctg gggcatacct cttttactgg tgcttagtgt ggggtctcag ggtgggccct
     2401 ctataatatt aaatgtcatt gaggacacag aagtagaatt tccagttgaa aatgctttgg
     2461 tttttttttt tttttttttt tttttttttt tttttgcggt acgcgggcct ctcactgctg
     2521 tggcatcccc cgttgcggag cacaggctcc ggacgcgcag gctcagcag
//
LOCUS       XM_032602603            2732 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X3, mRNA.
ACCESSION   XM_032602603
VERSION     XM_032602603.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2732
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             577..2253
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X1"
                     /protein_id="XP_032458494.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEVFKDNCCKRE
                     VLNLYVFCKNAPGCNAKVILGRYQDHLQHCLFQNVQCSNESCREPVLRKDLKEHLSAD
                     CPFREEKCLYCKKDVVVINLQNHEENLCPEYPVSCPNKCLQIIPRTEVDEHLAVCPEA
                     EQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLLVLEKNFRLEEQISDLYKSLEQKES
                     KIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQVLASHIDKSAWLEVQVRQLLQMAN
                     QQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVVLEGETNKHDAHINIHKAQLNKNEE
                     RFKLLESACYNGKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNG
                     DGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKRNHIMETFKADPNSSS
                     FKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVDLTDLEDL"
     misc_feature    691..858
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(700..705,745..747,751..765)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    958..1125
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    1123..1299
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    1351..>1674
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1786..2229
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1795..1797,1801..1803,1885..1890,1981..1983,
                     1990..1992,2041..2043)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1909..1911,1915..1917,1960..1962,2077..2079,
                     2128..2139)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 gccatcgcag ccctggagtc ctcgcgcgcc tgcagccggg agccggccga acccccgccc
       61 accggcccac acgtgagtcc agcccactcg ccgcccgggg cggctgcgcc gcggggattg
      121 agccccacgc tgtaggactg gagtgagggg accgaggagt atttttcggc tcatcccatt
      181 tactttgaaa cagaaagcgc cgcggcggca ggagcccccc gccgggctgc ggggacccgg
      241 gcctggctgc ccgtcccact cgagcccggg ccgtgcgtga gcacggggag tacggaggga
      301 agcgtggtga agtggctttg atgggagaca agcccgaggt tgaatcccaa ccaggcaatt
      361 gccaacgacg tcaccctgaa cacgctcttc aatctccctg agcttcagga cccgacctgt
      421 aaactatgaa ctgctttgct gcactcccag aggaaatgag gaaccagagg tctcctgaca
      481 gcttggagag acgtcacact tctcttcaaa ggagttaaaa ccatacccac atcattctcc
      541 atcccgtgtc caagaaaacc ctcttctgca aaagtaatgg cttgttctga ggagcaagga
      601 ggtgtcccct gtggcttcat ccgccagaac tctggtaact ccacgtcttt ggactttgag
      661 ccagatgcag agtaccagtt tgtggagcag ctggaagagc gctacagatg tgccttctgc
      721 cgctcagtgc ttcacaaccc ccaccagacg ggctgtgggc accgcttctg ccagcactgc
      781 atcctgtccc tgagagaatt aaacgcagtc ccactctgcc ctgtagataa ggaggtgatc
      841 aaatctcagg aggtgtttaa agacaattgc tgcaaaagag aagtcctcaa tttatatgta
      901 ttttgcaaaa acgctcctgg atgtaatgcc aaggttattc tgggacgata ccaggaccac
      961 cttcagcact gcttattcca aaatgtgcag tgctctaatg agagctgtcg ggagccagtc
     1021 cttcgcaaag atctgaaaga gcatttgagt gcagactgtc cgtttcgaga ggaaaaatgc
     1081 ctttattgca aaaaggatgt ggtggtcatc aatctacaga atcacgagga aaacttgtgt
     1141 cctgagtacc cagtatcttg tcccaacaag tgtttgcaga ttattccaag aactgaggtg
     1201 gatgaacacc ttgctgtgtg tcctgaagct gaacaagact gtcctttcaa gcactatggc
     1261 tgtactgtaa agaataaacg aggaaacctg caggagcatg aacattcagc cttacgggac
     1321 cacatgcttc tggttttaga aaagaacttc cggttagaag aacagatttc tgacttatat
     1381 aagagcctag aacaaaaaga aagtaaaatc cagcagctag cagcaaccgt gaacaaattc
     1441 gaaaaggagt tcaagcagtt tgcacagttg tttggcaaaa atggaacttt cctctcaaat
     1501 atacaggttc ttgccagtca cattgacaag tccgcttggc tagaagttca ggtgcgtcag
     1561 ttattacaaa tggctaacca gcaacaaagt aaatttgatc tgaggccttt ggtggaagcg
     1621 attgatacag tgaaacagaa aatcaccctg ctagaaaccc atgatcaaag attagttgtt
     1681 ttggaagggg agactaacaa acatgatgcc cacattaata ttcataaagc gcagctgaat
     1741 aaaaacgaag agcgatttaa gctgctagaa agtgcctgct ataacggaaa gctcatctgg
     1801 aaggtcacag actacaagct gaagaagaag gaggcgctgg atggacacac agtatccatc
     1861 ttcagccagc ccttctacac cagccggtgt ggctacaggc tctgtgctag agcgtacctg
     1921 aatggggacg ggtccgggaa gggtacgcac ctgtcgttgt actttgtggt aatgcgaggg
     1981 gagtttgatt cactgttgca gtggccattc aggcagaggg tgaccctgat gcttttggac
     2041 caaagtggca aaaggaacca cattatggag accttcaagg ctgaccccaa tagcagcagc
     2101 tttaaaagac ctgacgggga gatgaacatt gcctctggct gtccacgctt cgtggctcat
     2161 tccactttgg agaatgccaa gaacacctac attaaagatg acaccctgtt cttgaaagtg
     2221 gctgtggatt taactgacct ggaggatctc taatcactgc ttctggggtg ataaaaggac
     2281 tccttgaatc cagaaccttt ggttaatgta gtgactgaat gtaggctcga cacacacttg
     2341 tatttggctc tttgccctta atgtttgaag tcattttgag atttctcaag tgctgtcttc
     2401 tttttacatt ttattctgtc ccagtttgaa actgacaata cttagaatat cttctcatta
     2461 tttatatttt tatatctctt gaaagatgtt aattttctta aaggtaaggt ctggggcata
     2521 cctcttttac tggtgcttag tgtggggtct cagggtgggc cctctataat attaaatgtc
     2581 attgaggaca cagaagtaga atttccagtt gaaaatgctt tggttttttt tttttttttt
     2641 tttttttttt ttttttttgc ggtacgcggg cctctcactg ctgtggcatc ccccgttgcg
     2701 gagcacaggc tccggacgcg caggctcagc ag
//
LOCUS       XM_032602612            2735 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X4, mRNA.
ACCESSION   XM_032602612
VERSION     XM_032602612.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2735
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             580..2256
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X1"
                     /protein_id="XP_032458503.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEVFKDNCCKRE
                     VLNLYVFCKNAPGCNAKVILGRYQDHLQHCLFQNVQCSNESCREPVLRKDLKEHLSAD
                     CPFREEKCLYCKKDVVVINLQNHEENLCPEYPVSCPNKCLQIIPRTEVDEHLAVCPEA
                     EQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLLVLEKNFRLEEQISDLYKSLEQKES
                     KIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQVLASHIDKSAWLEVQVRQLLQMAN
                     QQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVVLEGETNKHDAHINIHKAQLNKNEE
                     RFKLLESACYNGKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNG
                     DGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKRNHIMETFKADPNSSS
                     FKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVDLTDLEDL"
     misc_feature    694..861
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(703..708,748..750,754..768)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    961..1128
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    1126..1302
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    1354..>1677
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1789..2232
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1798..1800,1804..1806,1888..1893,1984..1986,
                     1993..1995,2044..2046)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1912..1914,1918..1920,1963..1965,2080..2082,
                     2131..2142)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 gccatcgcag ccctggagtc ctcgcgcgcc tgcagccggg agccggccga acccccgccc
       61 accggcccac acgtgagtcc agcccactcg ccgcccgggg cggctgcgcc gcggggattg
      121 agccccacgc tgtaggactg gagtgagggg accgaggagt atttttcggc tcatcccatt
      181 tactttgaaa cagaaagcgc cgcggcggca ggagcccccc gccgggctgc ggggacccgg
      241 gcctggctgc ccgtcccact cgagcccggg ccgtgcgtga gcacggggag tacggaggga
      301 agcgtggtga agtggctttg atgggagaca agcccgaggt tgaatcccaa ccaggcaatt
      361 gccaacgacg tcaccctgaa cacgctcttc aatctccctg agcttcagga cccgacctgt
      421 aaactatgaa ccagtgcttt gctgcactcc cagaggaaat gaggaaccag aggtctcctg
      481 acagcttgga gagacgtcac acttctcttc aaaggagtta aaaccatacc cacatcattc
      541 tccatcccgt gtccaagaaa accctcttct gcaaaagtaa tggcttgttc tgaggagcaa
      601 ggaggtgtcc cctgtggctt catccgccag aactctggta actccacgtc tttggacttt
      661 gagccagatg cagagtacca gtttgtggag cagctggaag agcgctacag atgtgccttc
      721 tgccgctcag tgcttcacaa cccccaccag acgggctgtg ggcaccgctt ctgccagcac
      781 tgcatcctgt ccctgagaga attaaacgca gtcccactct gccctgtaga taaggaggtg
      841 atcaaatctc aggaggtgtt taaagacaat tgctgcaaaa gagaagtcct caatttatat
      901 gtattttgca aaaacgctcc tggatgtaat gccaaggtta ttctgggacg ataccaggac
      961 caccttcagc actgcttatt ccaaaatgtg cagtgctcta atgagagctg tcgggagcca
     1021 gtccttcgca aagatctgaa agagcatttg agtgcagact gtccgtttcg agaggaaaaa
     1081 tgcctttatt gcaaaaagga tgtggtggtc atcaatctac agaatcacga ggaaaacttg
     1141 tgtcctgagt acccagtatc ttgtcccaac aagtgtttgc agattattcc aagaactgag
     1201 gtggatgaac accttgctgt gtgtcctgaa gctgaacaag actgtccttt caagcactat
     1261 ggctgtactg taaagaataa acgaggaaac ctgcaggagc atgaacattc agccttacgg
     1321 gaccacatgc ttctggtttt agaaaagaac ttccggttag aagaacagat ttctgactta
     1381 tataagagcc tagaacaaaa agaaagtaaa atccagcagc tagcagcaac cgtgaacaaa
     1441 ttcgaaaagg agttcaagca gtttgcacag ttgtttggca aaaatggaac tttcctctca
     1501 aatatacagg ttcttgccag tcacattgac aagtccgctt ggctagaagt tcaggtgcgt
     1561 cagttattac aaatggctaa ccagcaacaa agtaaatttg atctgaggcc tttggtggaa
     1621 gcgattgata cagtgaaaca gaaaatcacc ctgctagaaa cccatgatca aagattagtt
     1681 gttttggaag gggagactaa caaacatgat gcccacatta atattcataa agcgcagctg
     1741 aataaaaacg aagagcgatt taagctgcta gaaagtgcct gctataacgg aaagctcatc
     1801 tggaaggtca cagactacaa gctgaagaag aaggaggcgc tggatggaca cacagtatcc
     1861 atcttcagcc agcccttcta caccagccgg tgtggctaca ggctctgtgc tagagcgtac
     1921 ctgaatgggg acgggtccgg gaagggtacg cacctgtcgt tgtactttgt ggtaatgcga
     1981 ggggagtttg attcactgtt gcagtggcca ttcaggcaga gggtgaccct gatgcttttg
     2041 gaccaaagtg gcaaaaggaa ccacattatg gagaccttca aggctgaccc caatagcagc
     2101 agctttaaaa gacctgacgg ggagatgaac attgcctctg gctgtccacg cttcgtggct
     2161 cattccactt tggagaatgc caagaacacc tacattaaag atgacaccct gttcttgaaa
     2221 gtggctgtgg atttaactga cctggaggat ctctaatcac tgcttctggg gtgataaaag
     2281 gactccttga atccagaacc tttggttaat gtagtgactg aatgtaggct cgacacacac
     2341 ttgtatttgg ctctttgccc ttaatgtttg aagtcatttt gagatttctc aagtgctgtc
     2401 ttctttttac attttattct gtcccagttt gaaactgaca atacttagaa tatcttctca
     2461 ttatttatat ttttatatct cttgaaagat gttaattttc ttaaaggtaa ggtctggggc
     2521 atacctcttt tactggtgct tagtgtgggg tctcagggtg ggccctctat aatattaaat
     2581 gtcattgagg acacagaagt agaatttcca gttgaaaatg ctttggtttt tttttttttt
     2641 tttttttttt tttttttttt tgcggtacgc gggcctctca ctgctgtggc atcccccgtt
     2701 gcggagcaca ggctccggac gcgcaggctc agcag
//
LOCUS       XM_032602621            2393 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X5, mRNA.
ACCESSION   XM_032602621
VERSION     XM_032602621.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2393
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             238..1914
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X1"
                     /protein_id="XP_032458512.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEVFKDNCCKRE
                     VLNLYVFCKNAPGCNAKVILGRYQDHLQHCLFQNVQCSNESCREPVLRKDLKEHLSAD
                     CPFREEKCLYCKKDVVVINLQNHEENLCPEYPVSCPNKCLQIIPRTEVDEHLAVCPEA
                     EQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLLVLEKNFRLEEQISDLYKSLEQKES
                     KIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQVLASHIDKSAWLEVQVRQLLQMAN
                     QQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVVLEGETNKHDAHINIHKAQLNKNEE
                     RFKLLESACYNGKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNG
                     DGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKRNHIMETFKADPNSSS
                     FKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVDLTDLEDL"
     misc_feature    352..519
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(361..366,406..408,412..426)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    619..786
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    784..960
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    1012..>1335
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1447..1890
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1456..1458,1462..1464,1546..1551,1642..1644,
                     1651..1653,1702..1704)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1570..1572,1576..1578,1621..1623,1738..1740,
                     1789..1800)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 gagagccgag cccccgcctc gccatcgcag ccctggagtc ctcgcgcgcc tgcagccggg
       61 agccggccga acccccgccc accggcccac actgctttgc tgcactccca gaggaaatga
      121 ggaaccagag gtctcctgac agcttggaga gacgtcacac ttctcttcaa aggagttaaa
      181 accataccca catcattctc catcccgtgt ccaagaaaac cctcttctgc aaaagtaatg
      241 gcttgttctg aggagcaagg aggtgtcccc tgtggcttca tccgccagaa ctctggtaac
      301 tccacgtctt tggactttga gccagatgca gagtaccagt ttgtggagca gctggaagag
      361 cgctacagat gtgccttctg ccgctcagtg cttcacaacc cccaccagac gggctgtggg
      421 caccgcttct gccagcactg catcctgtcc ctgagagaat taaacgcagt cccactctgc
      481 cctgtagata aggaggtgat caaatctcag gaggtgttta aagacaattg ctgcaaaaga
      541 gaagtcctca atttatatgt attttgcaaa aacgctcctg gatgtaatgc caaggttatt
      601 ctgggacgat accaggacca ccttcagcac tgcttattcc aaaatgtgca gtgctctaat
      661 gagagctgtc gggagccagt ccttcgcaaa gatctgaaag agcatttgag tgcagactgt
      721 ccgtttcgag aggaaaaatg cctttattgc aaaaaggatg tggtggtcat caatctacag
      781 aatcacgagg aaaacttgtg tcctgagtac ccagtatctt gtcccaacaa gtgtttgcag
      841 attattccaa gaactgaggt ggatgaacac cttgctgtgt gtcctgaagc tgaacaagac
      901 tgtcctttca agcactatgg ctgtactgta aagaataaac gaggaaacct gcaggagcat
      961 gaacattcag ccttacggga ccacatgctt ctggttttag aaaagaactt ccggttagaa
     1021 gaacagattt ctgacttata taagagccta gaacaaaaag aaagtaaaat ccagcagcta
     1081 gcagcaaccg tgaacaaatt cgaaaaggag ttcaagcagt ttgcacagtt gtttggcaaa
     1141 aatggaactt tcctctcaaa tatacaggtt cttgccagtc acattgacaa gtccgcttgg
     1201 ctagaagttc aggtgcgtca gttattacaa atggctaacc agcaacaaag taaatttgat
     1261 ctgaggcctt tggtggaagc gattgataca gtgaaacaga aaatcaccct gctagaaacc
     1321 catgatcaaa gattagttgt tttggaaggg gagactaaca aacatgatgc ccacattaat
     1381 attcataaag cgcagctgaa taaaaacgaa gagcgattta agctgctaga aagtgcctgc
     1441 tataacggaa agctcatctg gaaggtcaca gactacaagc tgaagaagaa ggaggcgctg
     1501 gatggacaca cagtatccat cttcagccag cccttctaca ccagccggtg tggctacagg
     1561 ctctgtgcta gagcgtacct gaatggggac gggtccggga agggtacgca cctgtcgttg
     1621 tactttgtgg taatgcgagg ggagtttgat tcactgttgc agtggccatt caggcagagg
     1681 gtgaccctga tgcttttgga ccaaagtggc aaaaggaacc acattatgga gaccttcaag
     1741 gctgacccca atagcagcag ctttaaaaga cctgacgggg agatgaacat tgcctctggc
     1801 tgtccacgct tcgtggctca ttccactttg gagaatgcca agaacaccta cattaaagat
     1861 gacaccctgt tcttgaaagt ggctgtggat ttaactgacc tggaggatct ctaatcactg
     1921 cttctggggt gataaaagga ctccttgaat ccagaacctt tggttaatgt agtgactgaa
     1981 tgtaggctcg acacacactt gtatttggct ctttgccctt aatgtttgaa gtcattttga
     2041 gatttctcaa gtgctgtctt ctttttacat tttattctgt cccagtttga aactgacaat
     2101 acttagaata tcttctcatt atttatattt ttatatctct tgaaagatgt taattttctt
     2161 aaaggtaagg tctggggcat acctctttta ctggtgctta gtgtggggtc tcagggtggg
     2221 ccctctataa tattaaatgt cattgaggac acagaagtag aatttccagt tgaaaatgct
     2281 ttggtttttt tttttttttt tttttttttt tttttttttg cggtacgcgg gcctctcact
     2341 gctgtggcat cccccgttgc ggagcacagg ctccggacgc gcaggctcag cag
//
LOCUS       XM_032602630            2323 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X6, mRNA.
ACCESSION   XM_032602630
VERSION     XM_032602630.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2323
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             168..1844
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X1"
                     /protein_id="XP_032458521.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEVFKDNCCKRE
                     VLNLYVFCKNAPGCNAKVILGRYQDHLQHCLFQNVQCSNESCREPVLRKDLKEHLSAD
                     CPFREEKCLYCKKDVVVINLQNHEENLCPEYPVSCPNKCLQIIPRTEVDEHLAVCPEA
                     EQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLLVLEKNFRLEEQISDLYKSLEQKES
                     KIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQVLASHIDKSAWLEVQVRQLLQMAN
                     QQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVVLEGETNKHDAHINIHKAQLNKNEE
                     RFKLLESACYNGKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNG
                     DGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKRNHIMETFKADPNSSS
                     FKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVDLTDLEDL"
     misc_feature    282..449
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(291..296,336..338,342..356)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    549..716
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    714..890
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    942..>1265
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1377..1820
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1386..1388,1392..1394,1476..1481,1572..1574,
                     1581..1583,1632..1634)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1500..1502,1506..1508,1551..1553,1668..1670,
                     1719..1730)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 cccgcccacc ggcccacacc agtgctttgc tgcactccca gaggaaatga ggaaccagag
       61 gtctcctgac agcttggaga gacgtcacac ttctcttcaa aggagttaaa accataccca
      121 catcattctc catcccgtgt ccaagaaaac cctcttctgc aaaagtaatg gcttgttctg
      181 aggagcaagg aggtgtcccc tgtggcttca tccgccagaa ctctggtaac tccacgtctt
      241 tggactttga gccagatgca gagtaccagt ttgtggagca gctggaagag cgctacagat
      301 gtgccttctg ccgctcagtg cttcacaacc cccaccagac gggctgtggg caccgcttct
      361 gccagcactg catcctgtcc ctgagagaat taaacgcagt cccactctgc cctgtagata
      421 aggaggtgat caaatctcag gaggtgttta aagacaattg ctgcaaaaga gaagtcctca
      481 atttatatgt attttgcaaa aacgctcctg gatgtaatgc caaggttatt ctgggacgat
      541 accaggacca ccttcagcac tgcttattcc aaaatgtgca gtgctctaat gagagctgtc
      601 gggagccagt ccttcgcaaa gatctgaaag agcatttgag tgcagactgt ccgtttcgag
      661 aggaaaaatg cctttattgc aaaaaggatg tggtggtcat caatctacag aatcacgagg
      721 aaaacttgtg tcctgagtac ccagtatctt gtcccaacaa gtgtttgcag attattccaa
      781 gaactgaggt ggatgaacac cttgctgtgt gtcctgaagc tgaacaagac tgtcctttca
      841 agcactatgg ctgtactgta aagaataaac gaggaaacct gcaggagcat gaacattcag
      901 ccttacggga ccacatgctt ctggttttag aaaagaactt ccggttagaa gaacagattt
      961 ctgacttata taagagccta gaacaaaaag aaagtaaaat ccagcagcta gcagcaaccg
     1021 tgaacaaatt cgaaaaggag ttcaagcagt ttgcacagtt gtttggcaaa aatggaactt
     1081 tcctctcaaa tatacaggtt cttgccagtc acattgacaa gtccgcttgg ctagaagttc
     1141 aggtgcgtca gttattacaa atggctaacc agcaacaaag taaatttgat ctgaggcctt
     1201 tggtggaagc gattgataca gtgaaacaga aaatcaccct gctagaaacc catgatcaaa
     1261 gattagttgt tttggaaggg gagactaaca aacatgatgc ccacattaat attcataaag
     1321 cgcagctgaa taaaaacgaa gagcgattta agctgctaga aagtgcctgc tataacggaa
     1381 agctcatctg gaaggtcaca gactacaagc tgaagaagaa ggaggcgctg gatggacaca
     1441 cagtatccat cttcagccag cccttctaca ccagccggtg tggctacagg ctctgtgcta
     1501 gagcgtacct gaatggggac gggtccggga agggtacgca cctgtcgttg tactttgtgg
     1561 taatgcgagg ggagtttgat tcactgttgc agtggccatt caggcagagg gtgaccctga
     1621 tgcttttgga ccaaagtggc aaaaggaacc acattatgga gaccttcaag gctgacccca
     1681 atagcagcag ctttaaaaga cctgacgggg agatgaacat tgcctctggc tgtccacgct
     1741 tcgtggctca ttccactttg gagaatgcca agaacaccta cattaaagat gacaccctgt
     1801 tcttgaaagt ggctgtggat ttaactgacc tggaggatct ctaatcactg cttctggggt
     1861 gataaaagga ctccttgaat ccagaacctt tggttaatgt agtgactgaa tgtaggctcg
     1921 acacacactt gtatttggct ctttgccctt aatgtttgaa gtcattttga gatttctcaa
     1981 gtgctgtctt ctttttacat tttattctgt cccagtttga aactgacaat acttagaata
     2041 tcttctcatt atttatattt ttatatctct tgaaagatgt taattttctt aaaggtaagg
     2101 tctggggcat acctctttta ctggtgctta gtgtggggtc tcagggtggg ccctctataa
     2161 tattaaatgt cattgaggac acagaagtag aatttccagt tgaaaatgct ttggtttttt
     2221 tttttttttt tttttttttt tttttttttg cggtacgcgg gcctctcact gctgtggcat
     2281 cccccgttgc ggagcacagg ctccggacgc gcaggctcag cag
//
LOCUS       XM_032602638            2176 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X7, mRNA.
ACCESSION   XM_032602638
VERSION     XM_032602638.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2176
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             21..1697
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X1"
                     /protein_id="XP_032458529.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEVFKDNCCKRE
                     VLNLYVFCKNAPGCNAKVILGRYQDHLQHCLFQNVQCSNESCREPVLRKDLKEHLSAD
                     CPFREEKCLYCKKDVVVINLQNHEENLCPEYPVSCPNKCLQIIPRTEVDEHLAVCPEA
                     EQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLLVLEKNFRLEEQISDLYKSLEQKES
                     KIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQVLASHIDKSAWLEVQVRQLLQMAN
                     QQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVVLEGETNKHDAHINIHKAQLNKNEE
                     RFKLLESACYNGKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNG
                     DGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKRNHIMETFKADPNSSS
                     FKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVDLTDLEDL"
     misc_feature    135..302
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(144..149,189..191,195..209)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    402..569
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    567..743
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    795..>1118
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1230..1673
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1239..1241,1245..1247,1329..1334,1425..1427,
                     1434..1436,1485..1487)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1353..1355,1359..1361,1404..1406,1521..1523,
                     1572..1583)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 accctgaata tgttttcaga atggcttgtt ctgaggagca aggaggtgtc ccctgtggct
       61 tcatccgcca gaactctggt aactccacgt ctttggactt tgagccagat gcagagtacc
      121 agtttgtgga gcagctggaa gagcgctaca gatgtgcctt ctgccgctca gtgcttcaca
      181 acccccacca gacgggctgt gggcaccgct tctgccagca ctgcatcctg tccctgagag
      241 aattaaacgc agtcccactc tgccctgtag ataaggaggt gatcaaatct caggaggtgt
      301 ttaaagacaa ttgctgcaaa agagaagtcc tcaatttata tgtattttgc aaaaacgctc
      361 ctggatgtaa tgccaaggtt attctgggac gataccagga ccaccttcag cactgcttat
      421 tccaaaatgt gcagtgctct aatgagagct gtcgggagcc agtccttcgc aaagatctga
      481 aagagcattt gagtgcagac tgtccgtttc gagaggaaaa atgcctttat tgcaaaaagg
      541 atgtggtggt catcaatcta cagaatcacg aggaaaactt gtgtcctgag tacccagtat
      601 cttgtcccaa caagtgtttg cagattattc caagaactga ggtggatgaa caccttgctg
      661 tgtgtcctga agctgaacaa gactgtcctt tcaagcacta tggctgtact gtaaagaata
      721 aacgaggaaa cctgcaggag catgaacatt cagccttacg ggaccacatg cttctggttt
      781 tagaaaagaa cttccggtta gaagaacaga tttctgactt atataagagc ctagaacaaa
      841 aagaaagtaa aatccagcag ctagcagcaa ccgtgaacaa attcgaaaag gagttcaagc
      901 agtttgcaca gttgtttggc aaaaatggaa ctttcctctc aaatatacag gttcttgcca
      961 gtcacattga caagtccgct tggctagaag ttcaggtgcg tcagttatta caaatggcta
     1021 accagcaaca aagtaaattt gatctgaggc ctttggtgga agcgattgat acagtgaaac
     1081 agaaaatcac cctgctagaa acccatgatc aaagattagt tgttttggaa ggggagacta
     1141 acaaacatga tgcccacatt aatattcata aagcgcagct gaataaaaac gaagagcgat
     1201 ttaagctgct agaaagtgcc tgctataacg gaaagctcat ctggaaggtc acagactaca
     1261 agctgaagaa gaaggaggcg ctggatggac acacagtatc catcttcagc cagcccttct
     1321 acaccagccg gtgtggctac aggctctgtg ctagagcgta cctgaatggg gacgggtccg
     1381 ggaagggtac gcacctgtcg ttgtactttg tggtaatgcg aggggagttt gattcactgt
     1441 tgcagtggcc attcaggcag agggtgaccc tgatgctttt ggaccaaagt ggcaaaagga
     1501 accacattat ggagaccttc aaggctgacc ccaatagcag cagctttaaa agacctgacg
     1561 gggagatgaa cattgcctct ggctgtccac gcttcgtggc tcattccact ttggagaatg
     1621 ccaagaacac ctacattaaa gatgacaccc tgttcttgaa agtggctgtg gatttaactg
     1681 acctggagga tctctaatca ctgcttctgg ggtgataaaa ggactccttg aatccagaac
     1741 ctttggttaa tgtagtgact gaatgtaggc tcgacacaca cttgtatttg gctctttgcc
     1801 cttaatgttt gaagtcattt tgagatttct caagtgctgt cttcttttta cattttattc
     1861 tgtcccagtt tgaaactgac aatacttaga atatcttctc attatttata tttttatatc
     1921 tcttgaaaga tgttaatttt cttaaaggta aggtctgggg catacctctt ttactggtgc
     1981 ttagtgtggg gtctcagggt gggccctcta taatattaaa tgtcattgag gacacagaag
     2041 tagaatttcc agttgaaaat gctttggttt tttttttttt tttttttttt tttttttttt
     2101 ttgcggtacg cgggcctctc actgctgtgg catcccccgt tgcggagcac aggctccgga
     2161 cgcgcaggct cagcag
//
LOCUS       XM_032602647            2202 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X8, mRNA.
ACCESSION   XM_032602647
VERSION     XM_032602647.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2202
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             47..1723
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X1"
                     /protein_id="XP_032458538.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEVFKDNCCKRE
                     VLNLYVFCKNAPGCNAKVILGRYQDHLQHCLFQNVQCSNESCREPVLRKDLKEHLSAD
                     CPFREEKCLYCKKDVVVINLQNHEENLCPEYPVSCPNKCLQIIPRTEVDEHLAVCPEA
                     EQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLLVLEKNFRLEEQISDLYKSLEQKES
                     KIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQVLASHIDKSAWLEVQVRQLLQMAN
                     QQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVVLEGETNKHDAHINIHKAQLNKNEE
                     RFKLLESACYNGKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNG
                     DGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKRNHIMETFKADPNSSS
                     FKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVDLTDLEDL"
     misc_feature    161..328
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(170..175,215..217,221..235)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    428..595
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    593..769
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    821..>1144
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1256..1699
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1265..1267,1271..1273,1355..1360,1451..1453,
                     1460..1462,1511..1513)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1379..1381,1385..1387,1430..1432,1547..1549,
                     1598..1609)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 gaccagatgt gactttgata aagggaactt cctgtccttc aatagaatgg cttgttctga
       61 ggagcaagga ggtgtcccct gtggcttcat ccgccagaac tctggtaact ccacgtcttt
      121 ggactttgag ccagatgcag agtaccagtt tgtggagcag ctggaagagc gctacagatg
      181 tgccttctgc cgctcagtgc ttcacaaccc ccaccagacg ggctgtgggc accgcttctg
      241 ccagcactgc atcctgtccc tgagagaatt aaacgcagtc ccactctgcc ctgtagataa
      301 ggaggtgatc aaatctcagg aggtgtttaa agacaattgc tgcaaaagag aagtcctcaa
      361 tttatatgta ttttgcaaaa acgctcctgg atgtaatgcc aaggttattc tgggacgata
      421 ccaggaccac cttcagcact gcttattcca aaatgtgcag tgctctaatg agagctgtcg
      481 ggagccagtc cttcgcaaag atctgaaaga gcatttgagt gcagactgtc cgtttcgaga
      541 ggaaaaatgc ctttattgca aaaaggatgt ggtggtcatc aatctacaga atcacgagga
      601 aaacttgtgt cctgagtacc cagtatcttg tcccaacaag tgtttgcaga ttattccaag
      661 aactgaggtg gatgaacacc ttgctgtgtg tcctgaagct gaacaagact gtcctttcaa
      721 gcactatggc tgtactgtaa agaataaacg aggaaacctg caggagcatg aacattcagc
      781 cttacgggac cacatgcttc tggttttaga aaagaacttc cggttagaag aacagatttc
      841 tgacttatat aagagcctag aacaaaaaga aagtaaaatc cagcagctag cagcaaccgt
      901 gaacaaattc gaaaaggagt tcaagcagtt tgcacagttg tttggcaaaa atggaacttt
      961 cctctcaaat atacaggttc ttgccagtca cattgacaag tccgcttggc tagaagttca
     1021 ggtgcgtcag ttattacaaa tggctaacca gcaacaaagt aaatttgatc tgaggccttt
     1081 ggtggaagcg attgatacag tgaaacagaa aatcaccctg ctagaaaccc atgatcaaag
     1141 attagttgtt ttggaagggg agactaacaa acatgatgcc cacattaata ttcataaagc
     1201 gcagctgaat aaaaacgaag agcgatttaa gctgctagaa agtgcctgct ataacggaaa
     1261 gctcatctgg aaggtcacag actacaagct gaagaagaag gaggcgctgg atggacacac
     1321 agtatccatc ttcagccagc ccttctacac cagccggtgt ggctacaggc tctgtgctag
     1381 agcgtacctg aatggggacg ggtccgggaa gggtacgcac ctgtcgttgt actttgtggt
     1441 aatgcgaggg gagtttgatt cactgttgca gtggccattc aggcagaggg tgaccctgat
     1501 gcttttggac caaagtggca aaaggaacca cattatggag accttcaagg ctgaccccaa
     1561 tagcagcagc tttaaaagac ctgacgggga gatgaacatt gcctctggct gtccacgctt
     1621 cgtggctcat tccactttgg agaatgccaa gaacacctac attaaagatg acaccctgtt
     1681 cttgaaagtg gctgtggatt taactgacct ggaggatctc taatcactgc ttctggggtg
     1741 ataaaaggac tccttgaatc cagaaccttt ggttaatgta gtgactgaat gtaggctcga
     1801 cacacacttg tatttggctc tttgccctta atgtttgaag tcattttgag atttctcaag
     1861 tgctgtcttc tttttacatt ttattctgtc ccagtttgaa actgacaata cttagaatat
     1921 cttctcatta tttatatttt tatatctctt gaaagatgtt aattttctta aaggtaaggt
     1981 ctggggcata cctcttttac tggtgcttag tgtggggtct cagggtgggc cctctataat
     2041 attaaatgtc attgaggaca cagaagtaga atttccagtt gaaaatgctt tggttttttt
     2101 tttttttttt tttttttttt ttttttttgc ggtacgcggg cctctcactg ctgtggcatc
     2161 ccccgttgcg gagcacaggc tccggacgcg caggctcagc ag
//
LOCUS       XM_032602656            2470 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor associated factor 5 (TRAF5),
            transcript variant X9, mRNA.
ACCESSION   XM_032602656
VERSION     XM_032602656.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2470
                     /gene="TRAF5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738804"
     CDS             417..1991
                     /gene="TRAF5"
                     /codon_start=1
                     /product="TNF receptor-associated factor 5 isoform X2"
                     /protein_id="XP_032458547.1"
                     /db_xref="GeneID:116738804"
                     /translation="MACSEEQGGVPCGFIRQNSGNSTSLDFEPDAEYQFVEQLEERYR
                     CAFCRSVLHNPHQTGCGHRFCQHCILSLRELNAVPLCPVDKEVIKSQEDHLQHCLFQN
                     VQCSNESCREPVLRKDLKEHLSADCPFREEKCLYCKKDVVVINLQNHEENLCPEYPVS
                     CPNKCLQIIPRTEVDEHLAVCPEAEQDCPFKHYGCTVKNKRGNLQEHEHSALRDHMLL
                     VLEKNFRLEEQISDLYKSLEQKESKIQQLAATVNKFEKEFKQFAQLFGKNGTFLSNIQ
                     VLASHIDKSAWLEVQVRQLLQMANQQQSKFDLRPLVEAIDTVKQKITLLETHDQRLVV
                     LEGETNKHDAHINIHKAQLNKNEERFKLLESACYNGKLIWKVTDYKLKKKEALDGHTV
                     SIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTL
                     MLLDQSGKRNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDD
                     TLFLKVAVDLTDLEDL"
     misc_feature    531..692
                     /gene="TRAF5"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in tumor necrosis factor (TNF) receptor-associated
                     factor 5 (TRAF5) and similar proteins; Region:
                     mRING-HC-C3HC3D_TRAF5; cd16642"
                     /db_xref="CDD:438304"
     misc_feature    order(540..545,585..587,591..605)
                     /gene="TRAF5"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438304"
     misc_feature    696..863
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    861..1037
                     /gene="TRAF5"
                     /note="TRAF-type zinc finger; Region: zf-TRAF; pfam02176"
                     /db_xref="CDD:280357"
     misc_feature    1089..>1412
                     /gene="TRAF5"
                     /note="Proteobacterial HemX domain, involved in
                     2-ketogluconate production (unrelated to B. subtilis HemX,
                     COG0755, no evidence of involvement in heme biosynthesis)
                     [General function prediction only]; Region: HemX; COG2959"
                     /db_xref="CDD:442199"
     misc_feature    1524..1967
                     /gene="TRAF5"
                     /note="Tumor Necrosis Factor Receptor (TNFR)-Associated
                     Factor (TRAF) family, TRAF5 subfamily, TRAF domain,
                     C-terminal MATH subdomain; TRAF molecules serve as adapter
                     proteins that link TNFRs and downstream kinase cascades
                     resulting in the activation of...; Region: MATH_TRAF5;
                     cd03780"
                     /db_xref="CDD:239749"
     misc_feature    order(1533..1535,1539..1541,1623..1628,1719..1721,
                     1728..1730,1779..1781)
                     /gene="TRAF5"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239749"
     misc_feature    order(1647..1649,1653..1655,1698..1700,1815..1817,
                     1866..1877)
                     /gene="TRAF5"
                     /note="TNFR binding site [active]"
                     /db_xref="CDD:239749"
ORIGIN      
        1 gccatcgcag ccctggagtc ctcgcgcgcc tgcagccggg agccggccga acccccgccc
       61 accggcccac acgtgagtcc agcccactcg ccgcccgggg cggctgcgcc gcggggattg
      121 agccccacgc tgtaggactg gagtgagggg accgaggagt atttttcggc tcatcccatt
      181 tactttgaaa cagaaagcgc cgcggcggca ggagcccccc gccgggctgc ggggacccgg
      241 gcctggctgc ccgtcccact cgagcccgca gtgctttgct gcactcccag aggaaatgag
      301 gaaccagagg tctcctgaca gcttggagag acgtcacact tctcttcaaa ggagttaaaa
      361 ccatacccac atcattctcc atcccgtgtc caagaaaacc ctcttctgca aaagtaatgg
      421 cttgttctga ggagcaagga ggtgtcccct gtggcttcat ccgccagaac tctggtaact
      481 ccacgtcttt ggactttgag ccagatgcag agtaccagtt tgtggagcag ctggaagagc
      541 gctacagatg tgccttctgc cgctcagtgc ttcacaaccc ccaccagacg ggctgtgggc
      601 accgcttctg ccagcactgc atcctgtccc tgagagaatt aaacgcagtc ccactctgcc
      661 ctgtagataa ggaggtgatc aaatctcagg aggaccacct tcagcactgc ttattccaaa
      721 atgtgcagtg ctctaatgag agctgtcggg agccagtcct tcgcaaagat ctgaaagagc
      781 atttgagtgc agactgtccg tttcgagagg aaaaatgcct ttattgcaaa aaggatgtgg
      841 tggtcatcaa tctacagaat cacgaggaaa acttgtgtcc tgagtaccca gtatcttgtc
      901 ccaacaagtg tttgcagatt attccaagaa ctgaggtgga tgaacacctt gctgtgtgtc
      961 ctgaagctga acaagactgt cctttcaagc actatggctg tactgtaaag aataaacgag
     1021 gaaacctgca ggagcatgaa cattcagcct tacgggacca catgcttctg gttttagaaa
     1081 agaacttccg gttagaagaa cagatttctg acttatataa gagcctagaa caaaaagaaa
     1141 gtaaaatcca gcagctagca gcaaccgtga acaaattcga aaaggagttc aagcagtttg
     1201 cacagttgtt tggcaaaaat ggaactttcc tctcaaatat acaggttctt gccagtcaca
     1261 ttgacaagtc cgcttggcta gaagttcagg tgcgtcagtt attacaaatg gctaaccagc
     1321 aacaaagtaa atttgatctg aggcctttgg tggaagcgat tgatacagtg aaacagaaaa
     1381 tcaccctgct agaaacccat gatcaaagat tagttgtttt ggaaggggag actaacaaac
     1441 atgatgccca cattaatatt cataaagcgc agctgaataa aaacgaagag cgatttaagc
     1501 tgctagaaag tgcctgctat aacggaaagc tcatctggaa ggtcacagac tacaagctga
     1561 agaagaagga ggcgctggat ggacacacag tatccatctt cagccagccc ttctacacca
     1621 gccggtgtgg ctacaggctc tgtgctagag cgtacctgaa tggggacggg tccgggaagg
     1681 gtacgcacct gtcgttgtac tttgtggtaa tgcgagggga gtttgattca ctgttgcagt
     1741 ggccattcag gcagagggtg accctgatgc ttttggacca aagtggcaaa aggaaccaca
     1801 ttatggagac cttcaaggct gaccccaata gcagcagctt taaaagacct gacggggaga
     1861 tgaacattgc ctctggctgt ccacgcttcg tggctcattc cactttggag aatgccaaga
     1921 acacctacat taaagatgac accctgttct tgaaagtggc tgtggattta actgacctgg
     1981 aggatctcta atcactgctt ctggggtgat aaaaggactc cttgaatcca gaacctttgg
     2041 ttaatgtagt gactgaatgt aggctcgaca cacacttgta tttggctctt tgcccttaat
     2101 gtttgaagtc attttgagat ttctcaagtg ctgtcttctt tttacatttt attctgtccc
     2161 agtttgaaac tgacaatact tagaatatct tctcattatt tatattttta tatctcttga
     2221 aagatgttaa ttttcttaaa ggtaaggtct ggggcatacc tcttttactg gtgcttagtg
     2281 tggggtctca gggtgggccc tctataatat taaatgtcat tgaggacaca gaagtagaat
     2341 ttccagttga aaatgctttg gttttttttt tttttttttt tttttttttt ttttttgcgg
     2401 tacgcgggcc tctcactgct gtggcatccc ccgttgcgga gcacaggctc cggacgcgca
     2461 ggctcagcag
//
LOCUS       XM_032602669            3014 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNNI3 interacting kinase (TNNI3K), mRNA.
ACCESSION   XM_032602669
VERSION     XM_032602669.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3014
                     /gene="TNNI3K"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 10 Proteins, and 9%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116738837"
     CDS             65..2572
                     /gene="TNNI3K"
                     /codon_start=1
                     /product="serine/threonine-protein kinase TNNI3K"
                     /protein_id="XP_032458560.1"
                     /db_xref="GeneID:116738837"
                     /translation="MGNYKSRPTQTCTDEWKKKVSESYVIVIERLEDDLRIKEKELTE
                     LRHIFGSDDAFSKVNLNYRTENGLSLLHLCCICGGNKSHIRTLMLKGLRPSRLTRNGF
                     TALHLAVYKDSAELITSLLHSGADIQQVGYGGLTALHIATIAGHLEAADVLLQHGANI
                     NVQDAVFFTPLHIAAYYGHEQVTRLLLKFGADVNVSGEVGDRPLHLASAKGFFNIAKL
                     LVEEGNKADVNAQDNEDHVPLHFCSRFGHHDIVKYLLQSNLEVQPHVVNIYGDTPLHL
                     ACYNGKFEVAKEIIQISGIESLTKENIFSETAFHSACTYGKSIDLVKFLLDQNVISIN
                     HQGRDGHTGLHSACYHGHIHLVQFLLDNGADMNLVACDPSRSSGEKDEQTCLMWAYEK
                     GHDAIVTLLKHYKRPQDELPCNEYSQPGGDGSYVSVPSPLGKIKSMTKEKADVLLLRA
                     GLPSHFHLQLSEIEFHEIIGSGSFGKVYKGRCRNKIVAIKRYRANTYCSKSDVDMFCR
                     EVSILCRLNHPCVIQFVGACLNDPSQFAIVTQYISGGSLFSLLHEQKRILDLQSKLII
                     AVDVAKGMEYLHNLTQPIIHRDLNSHNILLYEDGHAVVADFGESRFLQSLDEDNMTKQ
                     PGNLRWMAPEVFTQCTRYTIKADVFSYALCLWELLTGEIPFAHLKPAAAAADMAYHHI
                     RPPIGYSIPKPISSLLMRGWNACPEGRPEFSEVVTKLEECLCNTELMSPASSNSSGSL
                     SPSSSSDCLLSRGGPGRSHVAALRSRFELEYALNARSYAAWSQSAGQCASQGLSLEDM
                     KKSLQFSPIDKYGYVSDPMSPMHFHSCRNCGSFEDSS"
     misc_feature    206..1087
                     /gene="TNNI3K"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    260..358
                     /gene="TNNI3K"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    362..457
                     /gene="TNNI3K"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    464..556
                     /gene="TNNI3K"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(467..469,479..484,491..499,503..508,518..520,
                     527..529,554..556,560..562,566..568,578..583,590..598,
                     602..607,617..619,626..628,653..655,659..661,665..667,
                     677..682,689..697,701..706,716..718,725..727,758..760)
                     /gene="TNNI3K"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    560..655
                     /gene="TNNI3K"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    659..760
                     /gene="TNNI3K"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(869..871,875..877,887..892,899..907,911..916,
                     926..928,935..937,968..970,974..976,980..982,992..997,
                     1004..1012,1019..1024,1034..1036,1046..1048,1073..1075,
                     1079..1081,1085..1087,1097..1102,1109..1117,1121..1126,
                     1136..1138,1145..1147)
                     /gene="TNNI3K"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    869..970
                     /gene="TNNI3K"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    974..1075
                     /gene="TNNI3K"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    989..1267
                     /gene="TNNI3K"
                     /note="Ankyrin repeats (3 copies); Region: Ank_2;
                     pfam12796"
                     /db_xref="CDD:463710"
     misc_feature    1079..1171
                     /gene="TNNI3K"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1469..2230
                     /gene="TNNI3K"
                     /note="Catalytic domain of the Dual-specificity protein
                     kinase, TNNI3-interacting kinase; Region: PKc_TNNI3K;
                     cd14064"
                     /db_xref="CDD:270966"
     misc_feature    order(1469..1483,1493..1495,1526..1528,1532..1534,
                     1628..1630,1679..1690,1700..1702,1706..1708,1826..1828,
                     1832..1834,1838..1843,1847..1849,1880..1882,1889..1891,
                     1940..1951)
                     /gene="TNNI3K"
                     /note="active site"
                     /db_xref="CDD:270966"
     misc_feature    order(1469..1483,1493..1495,1526..1528,1532..1534,
                     1628..1630,1679..1690,1700..1702,1826..1828,1832..1834,
                     1838..1843,1847..1849,1880..1882)
                     /gene="TNNI3K"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270966"
     misc_feature    order(1481..1483,1700..1702,1706..1708,1826..1828,
                     1832..1834,1838..1840,1889..1891,1940..1951)
                     /gene="TNNI3K"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270966"
     misc_feature    1877..1951
                     /gene="TNNI3K"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270966"
ORIGIN      
        1 cacttgaact tggaatcttg taacctgagg aactgcactt gggaaaagaa gaatcttcta
       61 acaaatggga aattataaat ccagaccaac ccaaacttgt actgatgaat ggaagaagaa
      121 agtcagtgaa tcttatgtta ttgtaataga aagattagaa gatgacctgc ggatcaaaga
      181 aaaagaactt acagaactaa ggcatatatt tggttctgat gatgccttca gtaaagtcaa
      241 tttaaattac cgcacagaaa atggtctgtc tctacttcat ttatgttgca tttgtggagg
      301 caacaagtca catattagaa cccttatgtt aaaaggtctc cgcccatctc gactgacaag
      361 aaatggattt acagccttgc atttggcagt ttacaaggat agtgcagaat tgatcacttc
      421 tctgcttcac agtggagctg acatacagca ggttgggtat ggcggcctca ctgccctgca
      481 tattgctaca attgctggtc acctggaggc tgctgatgta ctactgcaac atggagctaa
      541 catcaacgtc caagatgcag tttttttcac tccattgcac attgcagcat actatgggca
      601 cgaacaggta acccgcctcc ttttgaaatt tggtgctgat gtaaatgtaa gcggtgaagt
      661 cggagatagg cccctccacc tagcatctgc aaaaggattc tttaatattg cgaaactctt
      721 ggtggaagaa ggcaacaaag cagatgtgaa tgctcaggac aatgaagatc atgttccact
      781 ccacttctgt tcccgctttg gacaccacga tatagtgaag tacctgctcc agagcaattt
      841 agaagttcag ccacatgttg ttaatatcta tggagacacc cctttgcacc tggcatgcta
      901 caatggcaaa tttgaagttg ccaaggagat catccaaata tcaggaatag aaagtctgac
      961 taaagaaaac atcttcagtg aaacggcttt tcacagtgct tgtacctatg gcaagagcat
     1021 tgacctggtt aaatttcttc ttgatcagaa tgtcataagc atcaaccacc aaggaaggga
     1081 tgggcacaca ggattgcact ctgcttgcta ccatggtcac attcacctgg ttcagttctt
     1141 actggataat ggagctgata tgaatctggt agcttgtgat ccaagcaggt ctagtggtga
     1201 aaaagatgag cagacgtgtt taatgtgggc ttatgaaaaa ggacatgatg caattgtcac
     1261 actcctgaaa cattataaga gacctcagga tgaattgccc tgtaatgaat attctcagcc
     1321 tggaggagat ggctcctatg tgtctgttcc atcccctttg gggaagatta aaagcatgac
     1381 aaaagagaag gcagatgttc tccttctaag ggctggattg ccttcacatt tccatcttca
     1441 gctctcagaa attgagttcc atgagattat cggctcaggt tcttttggga aagtgtataa
     1501 aggacgatgc agaaataaaa tagtggctat aaagcgttat cgagccaaca cctactgctc
     1561 caagtcagat gtggatatgt tttgccgaga ggtgtccatt ctctgccggc tcaatcatcc
     1621 ctgtgtcatt cagtttgtgg gtgcttgctt gaatgatccc agccagtttg ccatcgtcac
     1681 tcagtacata tcagggggtt ctctattctc cctgcttcat gaacagaaga ggattcttga
     1741 cttgcagtct aaattaatta ttgcagtaga tgttgccaaa ggtatggagt accttcacaa
     1801 cttgacacag ccaattatac accgtgactt aaacagtcac aatattcttc tctatgagga
     1861 tgggcatgct gtagtggcag attttggaga atcaagattt ctgcagtctc tggatgaaga
     1921 caacatgaca aaacaacctg ggaacctccg ctggatggct cctgaggtgt tcacacagtg
     1981 tacacgctac accatcaaag ccgacgtctt cagctacgct ctgtgtctgt gggaacttct
     2041 caccggcgaa attccgtttg ctcatctcaa gccagcggct gccgcagcag acatggctta
     2101 ccaccatatc agacctccca ttggctattc cattcccaag cccatatcat ctctgctgat
     2161 gcgagggtgg aatgcatgtc ccgaaggaag acctgaattt tctgaagttg ttaccaagtt
     2221 agaagagtgt ctctgcaaca ctgagctgat gtctcctgca tcaagtaaca gcagtgggtc
     2281 tctctcacct tcctcttctt ctgattgtct gctgagccgc ggagggcctg gccggagcca
     2341 cgtggcagct ttacggagtc gttttgaatt ggaatatgct ctaaatgcaa ggtcctatgc
     2401 tgcctggtcc caaagtgctg gacaatgtgc ctctcaaggc ctgtctttgg aggacatgaa
     2461 gaaaagtctt cagttctcac ccattgacaa atatggctat gtgtctgatc ccatgagccc
     2521 gatgcatttt cattcttgcc ggaattgtgg cagctttgag gacagcagct gacagcattc
     2581 cgcatttacc taaggagagt tttcccccaa actgacagca acaattctaa caatggcagc
     2641 cttgcttcca tttatatttt accctctaag gtctccttaa attggcttat tcacactggt
     2701 cctatttaat tccccaccac aagttgggct ctggatttgt ggctgaggaa tgaaatgcaa
     2761 aagagccaaa acagaatgta tttgaagaat ttttaatttt gtaaaggaaa aattaatttt
     2821 atgttgttgg ttggagatgg ggccttagtc gttggtgggg acttaacaat tgttatgttt
     2881 tcatagactg aattaagtag acgtgtttga gagtcgtgtg tttgatttct tagaatattt
     2941 ttcattttct tatctcatta tgttacttaa agtgtccagc cctgtgatta aagagtcttt
     3001 ggtgacgtac aaaa
//
LOCUS       XM_032602684            3390 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fucose-1-phosphate guanylyltransferase
            (FPGT), transcript variant X1, mRNA.
ACCESSION   XM_032602684
VERSION     XM_032602684.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3390
                     /gene="FPGT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 11 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116738841"
     CDS             70..1869
                     /gene="FPGT"
                     /codon_start=1
                     /product="fucose-1-phosphate guanylyltransferase isoform
                     X1"
                     /protein_id="XP_032458575.1"
                     /db_xref="GeneID:116738841"
                     /translation="MAATSALPGVSLREATQRRLRRFSELRGKPVAAGEFWDIVAITA
                     ADDKQERAYKQQLSEKLKKKELPLGVQYHVFVDPAGAKIGNGGSTLCALRCLEKLYGD
                     EWNSFTILLIHSGGYSQRLPNASALGKIFTALPFGSPIYQMLELKLAMYIDFPSHMNP
                     GILVTCADDIELYSIGESEYIRFDKPGFTALAHPSSLTVGTTHGVFVLEPFNYLEHRD
                     LEYRSCHRFLHKPSIEKMYQFDAVCRARNFFRQNFAGGDIPSLKLDPEYVYTDSLFYM
                     DHKTAKKLLAFYEKIGTLNCEIDAYGDFLQALGPGATVEYTRNTSNVTKEESELVDMR
                     QRIFHLLRGTSLNVVVLNNSKFYHIGTTEEYLFHFTSDSNLKSELGLQSIAFSIFPAI
                     PECSSNKSCIIQSILDSRSSVAPGSVVEYSRLGPDVSVGENCIISGSYIITTAVLSAH
                     SFVCSLSLKMNRHLKYSTMACGVQDNLKKNVKTLSDIKLLQFFGVCFLSCLDIWNLKV
                     TEELFSGNKTCLSLWNARIFPVCSSLSDSVTTSLKMLNAVQNKSAFSLNKYKLLSIEE
                     MLFYKDVEDMITYREQIFLEITLNKKQSDLETS"
     misc_feature    409..1668
                     /gene="FPGT"
                     /note="L-fucokinase; Region: Fucokinase; pfam07959"
                     /db_xref="CDD:462323"
ORIGIN      
        1 gggcgcatgc gtgcggtgct gggctgcggg atcgctggaa gtcctcggcg gtgttgggga
       61 aagtgagcta tggcagccac gagtgccctt ccaggcgtat ctttgcgaga agccacccag
      121 cgaaggttgc ggaggttttc agagcttaga ggcaaacctg tggcagctgg agaattctgg
      181 gacattgttg caataacagc agctgatgat aaacaggaac gtgcttataa gcaacagctg
      241 tcagaaaagc tgaaaaaaaa ggagttacct cttggagttc aatatcatgt ttttgttgat
      301 cctgctggag ccaaaattgg aaatggagga tcgacacttt gtgctcttcg atgtttggaa
      361 aagctttatg gagatgaatg gaattctttt accatcctat taattcactc tggtggctac
      421 agtcaacgcc ttccaaatgc aagtgctctg gggaaaattt tcactgcttt accttttggt
      481 agccccattt atcagatgtt ggaattaaaa ctagccatgt acattgattt cccctcacat
      541 atgaatcctg ggattctggt tacctgtgca gatgatattg aactttatag tattggagaa
      601 tctgagtata ttaggtttga caaacctggc tttactgctt tagctcatcc ttctagtttg
      661 actgtaggta caacacatgg agtatttgtc ttagaacctt ttaactattt agaacataga
      721 gacctcgagt acagaagttg ccatcgtttc cttcataagc ccagcataga aaagatgtat
      781 cagtttgatg ctgtgtgtag agctagaaat ttttttcgtc aaaactttgc tgggggtgac
      841 ataccctctc ttaaattaga ccctgagtat gtctacacag acagcctatt ttatatggat
      901 cataaaacag cgaaaaagtt acttgctttt tatgaaaaaa taggtacatt gaactgtgaa
      961 atagatgcct atggagactt tctgcaggct ttgggacctg gagcaactgt ggaatatacc
     1021 agaaacacat caaatgttac taaagaagag tcagagctgg tagacatgag gcaaagaata
     1081 tttcatcttc ttagaggaac atcactaaat gttgttgttc ttaataactc caaattttat
     1141 cacattggaa caactgaaga atatttgttt cattttactt ctgatagcaa tttgaagtca
     1201 gagcttggct tacagtccat agcttttagc atctttccag caataccaga atgctctagc
     1261 aacaaatcct gtatcattca aagtatattg gattcaagaa gttctgtggc acctggctca
     1321 gttgtagagt attccagatt ggggcctgat gtttcagtgg gggaaaattg cattattagt
     1381 ggttcttata tcataacaac agccgtcctg tctgcacatt cttttgtgtg ttccttaagc
     1441 ttgaagatga atagacactt aaagtattca actatggcat gtggagtgca agacaacttg
     1501 aaaaagaatg ttaaaacatt gtcagatata aagttacttc aattctttgg agtctgtttc
     1561 ctgtcatgct tagacatttg gaatctcaaa gttacagagg aactgttctc tggaaacaag
     1621 acatgtttaa gtttgtggaa tgctcgtatt ttcccagttt gttcttcttt gagtgattca
     1681 gttacaacat ccctaaagat gttaaatgct gtacagaaca agtcagcatt cagcctgaat
     1741 aaatataagc tgttgtccat tgaagaaatg cttttctaca aagatgtgga agacatgata
     1801 acttataggg agcaaatttt tctagaaatt actttgaata aaaaacagtc tgatttagag
     1861 acatcttaaa tattgtatac tctgcctgtc ttgattgagc aagattgcag atgcaggaat
     1921 tttctgtaga cttgtttttt aattgaaatg aattaatgaa aattatatta acatgcttgc
     1981 tgtagcataa aattaataac aaaaataaac catttttaga tgaaagaata gcttaaggat
     2041 gtaagttcag aaaagtgatt tttttaatat ttattactat ttaaattttt cttttataaa
     2101 gatgacttgt ggaacattat tttgttcaca aaatactata attgttttaa aggtaatttt
     2161 ctaaatatac cttcagaata ttttcatctt cttttgggct ttggttccag tgaagttcta
     2221 tgtgttcatt ggcagttctc tcctcaagtg cattagacct attctgatga actaacaaaa
     2281 atgtcatact gtagggtctt caaagcactg taggaatact gtagaagtac tttttcagaa
     2341 acaaatccat ggctaacaga gttaaatgaa tgcttaaaat attgtgatag tcttaattaa
     2401 taaataagta ttaatagata caaaccattc tgaaattgat gataaaaatc tatgtgactt
     2461 atcagcaacc ctcagttatg atatttatgt atatattttt caagtttctt cccaaggagt
     2521 aaataaagat atatggtagc cattgtttag catgtactga tttacttgca gagatttcag
     2581 aggatgttat gtgtttgtca ctcattaaaa gttcaatgct gtatttctaa tctaattaat
     2641 ctaaggagtc atcagttctt aagaatcacc attattttat gttccactga aaaagagaaa
     2701 acactaccaa taaaatatgc aatgcttttc ttgttacttg aagttattat ttattggaaa
     2761 tcttttttaa aaccacttaa atatagattt atgtcattta acccttttgc aaatacatgt
     2821 agaggaacaa aaaagtgaaa tattaagata cagtcaagac ttttctgaag cttcacatct
     2881 agagtcaaac ttttctaaat taattttcaa ctcaagagtg gttgatatcc atgtgctatc
     2941 ttctaatacc atctagtacc atcttctgtg ctatcaaagg tattgataaa gcttcatatt
     3001 ctacaagtgc caccaccgca ctgatgcctg gatttacctt caagctatgg acaccagata
     3061 cctgttctgc aagtggatgc tgatgctgtt attactttac agagttgttt cacttttact
     3121 ttagttaatc acatgtctcc agaatgtagt tttatttaaa tcagtgggag gtttctgaca
     3181 aattggtggt caccacgtta atcatattcc tgcacaatgt atggattcta gttgctttga
     3241 aatgttatct gttccaaaga atttggcagt gtctctttcc ttgatatgca tcacttggtg
     3301 tgtagtacca cacatgtatc accagcagtg tatctaactc aaccagtgtg ataaccacat
     3361 gcatgaataa gtaataaatt ggacattttc
//
LOCUS       XM_032602693            3212 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fucose-1-phosphate guanylyltransferase
            (FPGT), transcript variant X2, mRNA.
ACCESSION   XM_032602693
VERSION     XM_032602693.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3212
                     /gene="FPGT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738841"
     CDS             60..1691
                     /gene="FPGT"
                     /codon_start=1
                     /product="fucose-1-phosphate guanylyltransferase isoform
                     X2"
                     /protein_id="XP_032458584.1"
                     /db_xref="GeneID:116738841"
                     /translation="MAATSALPGVSLREATQRRLRRFSELRGNGGSTLCALRCLEKLY
                     GDEWNSFTILLIHSGGYSQRLPNASALGKIFTALPFGSPIYQMLELKLAMYIDFPSHM
                     NPGILVTCADDIELYSIGESEYIRFDKPGFTALAHPSSLTVGTTHGVFVLEPFNYLEH
                     RDLEYRSCHRFLHKPSIEKMYQFDAVCRARNFFRQNFAGGDIPSLKLDPEYVYTDSLF
                     YMDHKTAKKLLAFYEKIGTLNCEIDAYGDFLQALGPGATVEYTRNTSNVTKEESELVD
                     MRQRIFHLLRGTSLNVVVLNNSKFYHIGTTEEYLFHFTSDSNLKSELGLQSIAFSIFP
                     AIPECSSNKSCIIQSILDSRSSVAPGSVVEYSRLGPDVSVGENCIISGSYIITTAVLS
                     AHSFVCSLSLKMNRHLKYSTMACGVQDNLKKNVKTLSDIKLLQFFGVCFLSCLDIWNL
                     KVTEELFSGNKTCLSLWNARIFPVCSSLSDSVTTSLKMLNAVQNKSAFSLNKYKLLSI
                     EEMLFYKDVEDMITYREQIFLEITLNKKQSDLETS"
     misc_feature    231..1490
                     /gene="FPGT"
                     /note="L-fucokinase; Region: Fucokinase; pfam07959"
                     /db_xref="CDD:462323"
ORIGIN      
        1 gtgcggtgct gggctgcggg atcgctggaa gtcctcggcg gtgttgggga aagtgagcta
       61 tggcagccac gagtgccctt ccaggcgtat ctttgcgaga agccacccag cgaaggttgc
      121 ggaggttttc agagcttaga ggaaatggag gatcgacact ttgtgctctt cgatgtttgg
      181 aaaagcttta tggagatgaa tggaattctt ttaccatcct attaattcac tctggtggct
      241 acagtcaacg ccttccaaat gcaagtgctc tggggaaaat tttcactgct ttaccttttg
      301 gtagccccat ttatcagatg ttggaattaa aactagccat gtacattgat ttcccctcac
      361 atatgaatcc tgggattctg gttacctgtg cagatgatat tgaactttat agtattggag
      421 aatctgagta tattaggttt gacaaacctg gctttactgc tttagctcat ccttctagtt
      481 tgactgtagg tacaacacat ggagtatttg tcttagaacc ttttaactat ttagaacata
      541 gagacctcga gtacagaagt tgccatcgtt tccttcataa gcccagcata gaaaagatgt
      601 atcagtttga tgctgtgtgt agagctagaa atttttttcg tcaaaacttt gctgggggtg
      661 acataccctc tcttaaatta gaccctgagt atgtctacac agacagccta ttttatatgg
      721 atcataaaac agcgaaaaag ttacttgctt tttatgaaaa aataggtaca ttgaactgtg
      781 aaatagatgc ctatggagac tttctgcagg ctttgggacc tggagcaact gtggaatata
      841 ccagaaacac atcaaatgtt actaaagaag agtcagagct ggtagacatg aggcaaagaa
      901 tatttcatct tcttagagga acatcactaa atgttgttgt tcttaataac tccaaatttt
      961 atcacattgg aacaactgaa gaatatttgt ttcattttac ttctgatagc aatttgaagt
     1021 cagagcttgg cttacagtcc atagctttta gcatctttcc agcaatacca gaatgctcta
     1081 gcaacaaatc ctgtatcatt caaagtatat tggattcaag aagttctgtg gcacctggct
     1141 cagttgtaga gtattccaga ttggggcctg atgtttcagt gggggaaaat tgcattatta
     1201 gtggttctta tatcataaca acagccgtcc tgtctgcaca ttcttttgtg tgttccttaa
     1261 gcttgaagat gaatagacac ttaaagtatt caactatggc atgtggagtg caagacaact
     1321 tgaaaaagaa tgttaaaaca ttgtcagata taaagttact tcaattcttt ggagtctgtt
     1381 tcctgtcatg cttagacatt tggaatctca aagttacaga ggaactgttc tctggaaaca
     1441 agacatgttt aagtttgtgg aatgctcgta ttttcccagt ttgttcttct ttgagtgatt
     1501 cagttacaac atccctaaag atgttaaatg ctgtacagaa caagtcagca ttcagcctga
     1561 ataaatataa gctgttgtcc attgaagaaa tgcttttcta caaagatgtg gaagacatga
     1621 taacttatag ggagcaaatt tttctagaaa ttactttgaa taaaaaacag tctgatttag
     1681 agacatctta aatattgtat actctgcctg tcttgattga gcaagattgc agatgcagga
     1741 attttctgta gacttgtttt ttaattgaaa tgaattaatg aaaattatat taacatgctt
     1801 gctgtagcat aaaattaata acaaaaataa accattttta gatgaaagaa tagcttaagg
     1861 atgtaagttc agaaaagtga tttttttaat atttattact atttaaattt ttcttttata
     1921 aagatgactt gtggaacatt attttgttca caaaatacta taattgtttt aaaggtaatt
     1981 ttctaaatat accttcagaa tattttcatc ttcttttggg ctttggttcc agtgaagttc
     2041 tatgtgttca ttggcagttc tctcctcaag tgcattagac ctattctgat gaactaacaa
     2101 aaatgtcata ctgtagggtc ttcaaagcac tgtaggaata ctgtagaagt actttttcag
     2161 aaacaaatcc atggctaaca gagttaaatg aatgcttaaa atattgtgat agtcttaatt
     2221 aataaataag tattaataga tacaaaccat tctgaaattg atgataaaaa tctatgtgac
     2281 ttatcagcaa ccctcagtta tgatatttat gtatatattt ttcaagtttc ttcccaagga
     2341 gtaaataaag atatatggta gccattgttt agcatgtact gatttacttg cagagatttc
     2401 agaggatgtt atgtgtttgt cactcattaa aagttcaatg ctgtatttct aatctaatta
     2461 atctaaggag tcatcagttc ttaagaatca ccattatttt atgttccact gaaaaagaga
     2521 aaacactacc aataaaatat gcaatgcttt tcttgttact tgaagttatt atttattgga
     2581 aatctttttt aaaaccactt aaatatagat ttatgtcatt taaccctttt gcaaatacat
     2641 gtagaggaac aaaaaagtga aatattaaga tacagtcaag acttttctga agcttcacat
     2701 ctagagtcaa acttttctaa attaattttc aactcaagag tggttgatat ccatgtgcta
     2761 tcttctaata ccatctagta ccatcttctg tgctatcaaa ggtattgata aagcttcata
     2821 ttctacaagt gccaccaccg cactgatgcc tggatttacc ttcaagctat ggacaccaga
     2881 tacctgttct gcaagtggat gctgatgctg ttattacttt acagagttgt ttcactttta
     2941 ctttagttaa tcacatgtct ccagaatgta gttttattta aatcagtggg aggtttctga
     3001 caaattggtg gtcaccacgt taatcatatt cctgcacaat gtatggattc tagttgcttt
     3061 gaaatgttat ctgttccaaa gaatttggca gtgtctcttt ccttgatatg catcacttgg
     3121 tgtgtagtac cacacatgta tcaccagcag tgtatctaac tcaaccagtg tgataaccac
     3181 atgcatgaat aagtaataaa ttggacattt tc
//
LOCUS       XM_032602709            4980 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 18
            (CCDC18), transcript variant X1, mRNA.
ACCESSION   XM_032602709
VERSION     XM_032602709.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4980
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4980
                     /gene="CCDC18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 4
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116738846"
     CDS             350..4723
                     /gene="CCDC18"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 18 isoform
                     X1"
                     /protein_id="XP_032458600.1"
                     /db_xref="GeneID:116738846"
                     /translation="MESSSSDYYNKDNEEESLLADVASLRHELKITEWSLQRLGEELS
                     SVSPRENSGYASNLSRSERLVLEGLSQPSQLGLLNYSPYKKVCKMPNSGTDFQKKPRD
                     KMSFSSSTPVDQEIKSLREKLNKLRQQNACLVSQNHSLMTKIESVHFELTQSRTKVSM
                     LESAQQQAAIVPILEEQIINLEAEVSAQDKVLREAEDKLQQSQKMVTEKEQSLQKSQE
                     ECIKLKVDLFEQSKQGKRAEQQRNEALYNAEELSKAFQHYKEKVAEKLEKVQAEEAIL
                     EKNLINCEKENKRLQEKCGLYKSELEILKEKLRQLKEENNDGKEKLRIMAVKNSEVMA
                     QLTESRQSILKLESELEDKDEILREKFSLMNENRELKVHIATQNERLDLCQQEIESSR
                     VELRSLEKIMSQLPLKREMFGFKSSLSKHQMSILSNKEGSYIGCCETNKMVISELRIK
                     LAMKEAEIQKLQANLTANQLSHNLIASNDNQESGKLNSLETEPVKLGGNQVESIKDQN
                     QHTVNKQYERERQRLASGIEELRDKLMQIEAENSDLKVNMAHRTSQFQLIQEELLEKA
                     SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKVRSLETN
                     INTEHEKICLAFEKAKKIHLDQHKEMEKQIERLESQLEKKEQQFKEQEKTISMLQQDI
                     ICKQHHLESLDRLLTESKGEMEKENMKKDEALKTLQNQVSEETIKVRQLDSALEICKE
                     ELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETTEQNVILQHTLQQQ
                     QQMLQQETFRNGELEDIQTKLEKQVSKLEQELQKQRESSAEKLRKMEEECEAATYEAD
                     LKKQKVIELTGTARQVKLEMDHYKEELYKMEKEIKHLKRDGENKAMHLSQLDMILEQT
                     KTELDKKTNAVKELEKLQHHTETELTEALQKREVLETELQNAHGELKNTLRQLQELRD
                     VLQKAQLSLEEKYTTITDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV
                     TYLDMTIRENRGEMEQKIIKLEGTLEKSELELKESNKQIESLNEKLQNAKEQLREKEF
                     ITLQNEQEISQLKKETEWTQGKMKEMEIVMKEQEQYIATQYKEAIDLEQELRLSQEQM
                     QNSHTELVEAHRQQVQAQREVERLSSELEEIKQLSKEKEAHGKHLAEELGASQVREAQ
                     LEARMQAEIKKLSAEVESVKEAYHLEMISHQEKHAKWKITADSQKTSVQQLNEQLEKT
                     KLELEEAQDTISNLHQQVQNRNKVIEATNEALLIKESELTRLQAKISGHERAEDIKFL
                     PAPFTSPVEIAPDIQDSKFAKHSHTAFFKCRKLRRSISANDLSFRTRSDEDLSEELLQ
                     DLKKMQLEQPSTLEESQKDLTYTQSESFKPLPYDLEDDSSENNDFSTLSGMLRYINKE
                     VRLLKKSSMQTGAGSTQGENL"
     misc_feature    <683..>2455
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1592..3934
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3605..>4351
                     /gene="CCDC18"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 ggcggggcgg ggcgtcccca acggctcctg cggcggtttg acctcgggcc agctggggtt
       61 cgctagtttc ctgcgtggtg tgtctggggt tccacgcttg gggtccggca gagggtccga
      121 agtttccgaa cgcagcggag atcgcggcgt gcgccgtcgt cgggaactag agatgttgca
      181 aagaaagcag aatggggacc ttaaccattg acttgtgttt gggagagtct tcttatttaa
      241 gcagaagcaa atttgtggaa acaaaagaga aaagaggata gaaacatttt ctctactaag
      301 attccatagc atctcattta atttcctgcc agtttcttcc aataaggaaa tggagtctag
      361 ttcctcagac tactataata aagacaatga agaagaaagt ttgctggcag atgttgcttc
      421 cttaagacat gaactgaaga taacagaatg gagtttgcag agattagggg aagagttatc
      481 tagtgttagc ccacgtgaaa attctggtta tgcctctaat ctctcaaggt ctgaaaggct
      541 cgttctggaa ggtctttctc agcctagcca gcttggactt ttgaattact caccttataa
      601 aaaagtttgt aaaatgccca atagtggtac tgattttcaa aaaaagccaa gagataagat
      661 gtctttttca tcttctaccc ctgtggatca ggaaatcaaa agtcttcgag agaaacttaa
      721 taaacttagg caacagaatg cttgtttggt ctcacagaat cattctttaa tgactaaaat
      781 agagtctgtc cactttgaat tgacacagtc aagaacaaaa gtttctatgc ttgaatctgc
      841 tcaacaacag gcagccattg taccaatctt agaagaacag attataaatt tggaagcaga
      901 agtttcagcc caagataaag ttttgagaga ggcagaagat aaattacagc agagtcagaa
      961 aatggtgact gaaaaggaac agagtttgca gaagtcccaa gaggaatgta taaagctgaa
     1021 ggtagactta tttgaacaaa gtaaacaagg aaagagagct gaacaacaaa ggaatgaagc
     1081 actatataat gctgaagagc taagtaaagc tttccaacat tataaagaaa aggtggctga
     1141 aaaactggaa aaggttcaag ctgaagaagc aatattagag aaaaatctaa ttaactgtga
     1201 aaaagaaaat aaaaggctac aggaaaagtg tggtctatat aaaagtgaac ttgaaattct
     1261 gaaagagaaa ttaaggcagt taaaagaaga aaataatgat ggaaaagaaa aattaaggat
     1321 catggcagtg aaaaattcag aagtcatggc acaactaact gaatctagac aaagtattct
     1381 taagctagag agtgagttag aggataaaga cgaaatactt agagaaaaat tttctctgat
     1441 gaatgaaaac cgagaattaa aagttcatat tgcaacacag aatgagagac tggatttgtg
     1501 tcagcaagaa atagaaagtt caagggtgga actgagaagt ttggaaaaaa ttatgtccca
     1561 gttgccatta aaaagagaaa tgtttggttt taaatcatct ctgtctaagc accagatgag
     1621 tattttgtca aacaaggaag gcagttacat tggctgctgt gagacaaata aaatggtgat
     1681 ttcggaattg aggattaagc ttgcaatgaa agaggcagaa attcaaaagc ttcaggcaaa
     1741 cctgactgct aatcaattat ctcacaatct tattgcttct aatgacaacc aagaaagtgg
     1801 caaattaaat agtttagaaa cagaacctgt aaaactagga ggtaatcaag tagaaagtat
     1861 aaaagatcaa aatcaacata ctgtgaacaa gcaatatgaa agagaaaggc aaagacttgc
     1921 ttctggaata gaagaattac gtgataagtt gatgcagata gaagctgaga attctgattt
     1981 gaaggttaac atggcccaca gaactagtca gtttcagctg attcaagagg agctgctaga
     2041 gaaagcttca aactctagca aacttgaaag tgaaatgaca aagaaatgtt ctcaactttt
     2101 aactctagag aaacagctag aagaaaaaat tgttgcttat tcctctattg ctgcaaaaaa
     2161 tgcggaacta gaacaggaac ttatggaaaa gaatgaaaag gttagaagtc tagaaaccaa
     2221 tatcaataca gagcatgaga aaatttgttt agcttttgaa aaggcaaaga aaattcatct
     2281 tgaccagcat aaagaaatgg aaaagcagat tgaaagactt gaatctcaac tagagaaaaa
     2341 agaacaacaa tttaaagaac aagaaaagac aatatccatg ttgcagcaag atataatatg
     2401 taaacaacat caccttgaat cactagacag actcttgacg gaaagcaaag gggaaatgga
     2461 aaaggaaaat atgaagaaag atgaagcttt gaaaacattg cagaaccaag tatctgaaga
     2521 aacaatcaag gtcagacaac tagattcagc attggaaatt tgtaaggaag aacttgcttt
     2581 gcatttgaac caattggaag gaaataaaga aaagtttgaa aaacagctaa agaagaaatc
     2641 tgaagaagta tattgtttac agaaagagct gaagattaaa aatcacagtc ttcaagagac
     2701 tactgagcaa aatgttattc tgcagcatac tcttcaacaa cagcagcaaa tgttacaaca
     2761 agagacattt agaaatggag agctagaaga cattcaaact aaacttgaaa aacaggtatc
     2821 aaaacttgaa caagagcttc agaaacaaag ggaaagttca gctgaaaagt tgagaaaaat
     2881 ggaggaagaa tgtgaagcag ccacatatga agcagattta aaaaagcaaa aagttattga
     2941 acttactggt actgccaggc aagtaaaact tgagatggat cactacaaag aagaactgta
     3001 taaaatggaa aaagaaataa agcacctaaa acgagatgga gaaaataaag caatgcatct
     3061 ctctcagtta gacatgatat tagaacagac aaagacagaa ctagataaga aaacaaacgc
     3121 tgtgaaggag ttagaaaagt tacagcacca cactgaaact gaactaacag aagccttgca
     3181 gaaacgggaa gtactagaga ctgaactaca aaatgctcat ggagaattaa agaatacttt
     3241 aagacaactc caggaattga gagatgttct acagaaggct cagttatcat tagaggaaaa
     3301 atacactact ataacggatc tcacagctga acttagggaa tgcaagatgg agattgaaga
     3361 caaaaagcaa gaactccttg aaatggatca ggcacttaag gagagaaatt gggagctaaa
     3421 gcaaagagca gctcaagtta catatttgga tatgactatt cgtgagaaca ggggagaaat
     3481 ggaacagaaa ataattaaat tagagggtac tctggagaaa tcagaattgg aacttaaaga
     3541 aagcaacaaa cagatagaaa gtttgaatga aaaattgcaa aatgccaaag aacaacttcg
     3601 agaaaaagag tttataacac tacaaaatga acaggagata agtcaactga aaaaagaaac
     3661 tgaatggaca caaggaaaga tgaaagaaat ggaaattgtt atgaaagagc aggaacagta
     3721 cattgcaact cagtacaagg aggccataga tttggagcaa gaattgaggc tatctcagga
     3781 gcagatgcag aactctcata cagaattggt ggaggctcat cgtcaacaag tccaagcaca
     3841 gagagaagta gaaaggctgt caagtgaact ggaggaaata aagcaactct ctaaagagaa
     3901 agaagctcat ggaaaacatt tagctgaaga gttgggggct tctcaagtac gtgaagctca
     3961 gttagaagca agaatgcaag cagaaatcaa gaaattgtca gcagaagtag aatctgtcaa
     4021 agaagcttat catctagaga tgatttcaca tcaggagaag catgcaaagt ggaagattac
     4081 tgctgattct caaaagactt ctgttcagca actaaatgaa cagttagaga aaacaaaact
     4141 agaattagaa gaagctcagg acactataag caatttgcat cagcaagtcc aaaacaggaa
     4201 taaagtaatt gaagctacaa acgaagcatt acttattaaa gaatcagaat taaccagatt
     4261 gcaagccaaa atttctggac atgaaagggc agaagacatc aagtttctac cagccccgtt
     4321 tacatctcca gtagaaattg cgcctgatat tcaagattca aaatttgcta agcattctca
     4381 cacagctttc ttcaagtgta gaaaactacg tcgctctatt agtgccaatg accttagttt
     4441 cagaactcgt agtgatgaag atctttctga agaattactg caggacttaa aaaaaatgca
     4501 attggaacaa ccttcaacat tagaagaaag ccagaaggat ctgacttata cccagtcaga
     4561 gtcatttaaa cctctcccat atgacctaga agatgatagt tctgagaata atgacttcag
     4621 tacacttagt ggaatgctaa gatatataaa caaagaagtg agactattaa aaaagtcttc
     4681 tatgcaaaca ggtgctggtt caactcaggg agaaaatttg taattaaaag aagacgttga
     4741 tgtgatgaaa aatggaattt ttggtactgt gctgtgttta cttattatat acagttcata
     4801 cttcatagaa actgttattt tattgctttt gaataaattt taaggttttt aaagaaagtt
     4861 ctttcttcta aagcttactt atactttttg tgaaaattaa ttcactttat ttattgtttc
     4921 ggtttaaact tgctactttc cttttcttta ttttttatgt agaaacattg ttaaaatgca
//
LOCUS       XM_032602717            4761 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 18
            (CCDC18), transcript variant X2, mRNA.
ACCESSION   XM_032602717
VERSION     XM_032602717.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4761
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4761
                     /gene="CCDC18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116738846"
     CDS             131..4504
                     /gene="CCDC18"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 18 isoform
                     X1"
                     /protein_id="XP_032458608.1"
                     /db_xref="GeneID:116738846"
                     /translation="MESSSSDYYNKDNEEESLLADVASLRHELKITEWSLQRLGEELS
                     SVSPRENSGYASNLSRSERLVLEGLSQPSQLGLLNYSPYKKVCKMPNSGTDFQKKPRD
                     KMSFSSSTPVDQEIKSLREKLNKLRQQNACLVSQNHSLMTKIESVHFELTQSRTKVSM
                     LESAQQQAAIVPILEEQIINLEAEVSAQDKVLREAEDKLQQSQKMVTEKEQSLQKSQE
                     ECIKLKVDLFEQSKQGKRAEQQRNEALYNAEELSKAFQHYKEKVAEKLEKVQAEEAIL
                     EKNLINCEKENKRLQEKCGLYKSELEILKEKLRQLKEENNDGKEKLRIMAVKNSEVMA
                     QLTESRQSILKLESELEDKDEILREKFSLMNENRELKVHIATQNERLDLCQQEIESSR
                     VELRSLEKIMSQLPLKREMFGFKSSLSKHQMSILSNKEGSYIGCCETNKMVISELRIK
                     LAMKEAEIQKLQANLTANQLSHNLIASNDNQESGKLNSLETEPVKLGGNQVESIKDQN
                     QHTVNKQYERERQRLASGIEELRDKLMQIEAENSDLKVNMAHRTSQFQLIQEELLEKA
                     SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKVRSLETN
                     INTEHEKICLAFEKAKKIHLDQHKEMEKQIERLESQLEKKEQQFKEQEKTISMLQQDI
                     ICKQHHLESLDRLLTESKGEMEKENMKKDEALKTLQNQVSEETIKVRQLDSALEICKE
                     ELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETTEQNVILQHTLQQQ
                     QQMLQQETFRNGELEDIQTKLEKQVSKLEQELQKQRESSAEKLRKMEEECEAATYEAD
                     LKKQKVIELTGTARQVKLEMDHYKEELYKMEKEIKHLKRDGENKAMHLSQLDMILEQT
                     KTELDKKTNAVKELEKLQHHTETELTEALQKREVLETELQNAHGELKNTLRQLQELRD
                     VLQKAQLSLEEKYTTITDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV
                     TYLDMTIRENRGEMEQKIIKLEGTLEKSELELKESNKQIESLNEKLQNAKEQLREKEF
                     ITLQNEQEISQLKKETEWTQGKMKEMEIVMKEQEQYIATQYKEAIDLEQELRLSQEQM
                     QNSHTELVEAHRQQVQAQREVERLSSELEEIKQLSKEKEAHGKHLAEELGASQVREAQ
                     LEARMQAEIKKLSAEVESVKEAYHLEMISHQEKHAKWKITADSQKTSVQQLNEQLEKT
                     KLELEEAQDTISNLHQQVQNRNKVIEATNEALLIKESELTRLQAKISGHERAEDIKFL
                     PAPFTSPVEIAPDIQDSKFAKHSHTAFFKCRKLRRSISANDLSFRTRSDEDLSEELLQ
                     DLKKMQLEQPSTLEESQKDLTYTQSESFKPLPYDLEDDSSENNDFSTLSGMLRYINKE
                     VRLLKKSSMQTGAGSTQGENL"
     misc_feature    <464..>2236
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1373..3715
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3386..>4132
                     /gene="CCDC18"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 gtttgacctc gggccagctg gggttcgcta gtttcctgcg tggtgtgtct ggggttccac
       61 gcttggggtc cggcagaggg tccgaagttt ccgaacgcag cggagatcgc ggcgtgcgcc
      121 gtcgtcggaa atggagtcta gttcctcaga ctactataat aaagacaatg aagaagaaag
      181 tttgctggca gatgttgctt ccttaagaca tgaactgaag ataacagaat ggagtttgca
      241 gagattaggg gaagagttat ctagtgttag cccacgtgaa aattctggtt atgcctctaa
      301 tctctcaagg tctgaaaggc tcgttctgga aggtctttct cagcctagcc agcttggact
      361 tttgaattac tcaccttata aaaaagtttg taaaatgccc aatagtggta ctgattttca
      421 aaaaaagcca agagataaga tgtctttttc atcttctacc cctgtggatc aggaaatcaa
      481 aagtcttcga gagaaactta ataaacttag gcaacagaat gcttgtttgg tctcacagaa
      541 tcattcttta atgactaaaa tagagtctgt ccactttgaa ttgacacagt caagaacaaa
      601 agtttctatg cttgaatctg ctcaacaaca ggcagccatt gtaccaatct tagaagaaca
      661 gattataaat ttggaagcag aagtttcagc ccaagataaa gttttgagag aggcagaaga
      721 taaattacag cagagtcaga aaatggtgac tgaaaaggaa cagagtttgc agaagtccca
      781 agaggaatgt ataaagctga aggtagactt atttgaacaa agtaaacaag gaaagagagc
      841 tgaacaacaa aggaatgaag cactatataa tgctgaagag ctaagtaaag ctttccaaca
      901 ttataaagaa aaggtggctg aaaaactgga aaaggttcaa gctgaagaag caatattaga
      961 gaaaaatcta attaactgtg aaaaagaaaa taaaaggcta caggaaaagt gtggtctata
     1021 taaaagtgaa cttgaaattc tgaaagagaa attaaggcag ttaaaagaag aaaataatga
     1081 tggaaaagaa aaattaagga tcatggcagt gaaaaattca gaagtcatgg cacaactaac
     1141 tgaatctaga caaagtattc ttaagctaga gagtgagtta gaggataaag acgaaatact
     1201 tagagaaaaa ttttctctga tgaatgaaaa ccgagaatta aaagttcata ttgcaacaca
     1261 gaatgagaga ctggatttgt gtcagcaaga aatagaaagt tcaagggtgg aactgagaag
     1321 tttggaaaaa attatgtccc agttgccatt aaaaagagaa atgtttggtt ttaaatcatc
     1381 tctgtctaag caccagatga gtattttgtc aaacaaggaa ggcagttaca ttggctgctg
     1441 tgagacaaat aaaatggtga tttcggaatt gaggattaag cttgcaatga aagaggcaga
     1501 aattcaaaag cttcaggcaa acctgactgc taatcaatta tctcacaatc ttattgcttc
     1561 taatgacaac caagaaagtg gcaaattaaa tagtttagaa acagaacctg taaaactagg
     1621 aggtaatcaa gtagaaagta taaaagatca aaatcaacat actgtgaaca agcaatatga
     1681 aagagaaagg caaagacttg cttctggaat agaagaatta cgtgataagt tgatgcagat
     1741 agaagctgag aattctgatt tgaaggttaa catggcccac agaactagtc agtttcagct
     1801 gattcaagag gagctgctag agaaagcttc aaactctagc aaacttgaaa gtgaaatgac
     1861 aaagaaatgt tctcaacttt taactctaga gaaacagcta gaagaaaaaa ttgttgctta
     1921 ttcctctatt gctgcaaaaa atgcggaact agaacaggaa cttatggaaa agaatgaaaa
     1981 ggttagaagt ctagaaacca atatcaatac agagcatgag aaaatttgtt tagcttttga
     2041 aaaggcaaag aaaattcatc ttgaccagca taaagaaatg gaaaagcaga ttgaaagact
     2101 tgaatctcaa ctagagaaaa aagaacaaca atttaaagaa caagaaaaga caatatccat
     2161 gttgcagcaa gatataatat gtaaacaaca tcaccttgaa tcactagaca gactcttgac
     2221 ggaaagcaaa ggggaaatgg aaaaggaaaa tatgaagaaa gatgaagctt tgaaaacatt
     2281 gcagaaccaa gtatctgaag aaacaatcaa ggtcagacaa ctagattcag cattggaaat
     2341 ttgtaaggaa gaacttgctt tgcatttgaa ccaattggaa ggaaataaag aaaagtttga
     2401 aaaacagcta aagaagaaat ctgaagaagt atattgttta cagaaagagc tgaagattaa
     2461 aaatcacagt cttcaagaga ctactgagca aaatgttatt ctgcagcata ctcttcaaca
     2521 acagcagcaa atgttacaac aagagacatt tagaaatgga gagctagaag acattcaaac
     2581 taaacttgaa aaacaggtat caaaacttga acaagagctt cagaaacaaa gggaaagttc
     2641 agctgaaaag ttgagaaaaa tggaggaaga atgtgaagca gccacatatg aagcagattt
     2701 aaaaaagcaa aaagttattg aacttactgg tactgccagg caagtaaaac ttgagatgga
     2761 tcactacaaa gaagaactgt ataaaatgga aaaagaaata aagcacctaa aacgagatgg
     2821 agaaaataaa gcaatgcatc tctctcagtt agacatgata ttagaacaga caaagacaga
     2881 actagataag aaaacaaacg ctgtgaagga gttagaaaag ttacagcacc acactgaaac
     2941 tgaactaaca gaagccttgc agaaacggga agtactagag actgaactac aaaatgctca
     3001 tggagaatta aagaatactt taagacaact ccaggaattg agagatgttc tacagaaggc
     3061 tcagttatca ttagaggaaa aatacactac tataacggat ctcacagctg aacttaggga
     3121 atgcaagatg gagattgaag acaaaaagca agaactcctt gaaatggatc aggcacttaa
     3181 ggagagaaat tgggagctaa agcaaagagc agctcaagtt acatatttgg atatgactat
     3241 tcgtgagaac aggggagaaa tggaacagaa aataattaaa ttagagggta ctctggagaa
     3301 atcagaattg gaacttaaag aaagcaacaa acagatagaa agtttgaatg aaaaattgca
     3361 aaatgccaaa gaacaacttc gagaaaaaga gtttataaca ctacaaaatg aacaggagat
     3421 aagtcaactg aaaaaagaaa ctgaatggac acaaggaaag atgaaagaaa tggaaattgt
     3481 tatgaaagag caggaacagt acattgcaac tcagtacaag gaggccatag atttggagca
     3541 agaattgagg ctatctcagg agcagatgca gaactctcat acagaattgg tggaggctca
     3601 tcgtcaacaa gtccaagcac agagagaagt agaaaggctg tcaagtgaac tggaggaaat
     3661 aaagcaactc tctaaagaga aagaagctca tggaaaacat ttagctgaag agttgggggc
     3721 ttctcaagta cgtgaagctc agttagaagc aagaatgcaa gcagaaatca agaaattgtc
     3781 agcagaagta gaatctgtca aagaagctta tcatctagag atgatttcac atcaggagaa
     3841 gcatgcaaag tggaagatta ctgctgattc tcaaaagact tctgttcagc aactaaatga
     3901 acagttagag aaaacaaaac tagaattaga agaagctcag gacactataa gcaatttgca
     3961 tcagcaagtc caaaacagga ataaagtaat tgaagctaca aacgaagcat tacttattaa
     4021 agaatcagaa ttaaccagat tgcaagccaa aatttctgga catgaaaggg cagaagacat
     4081 caagtttcta ccagccccgt ttacatctcc agtagaaatt gcgcctgata ttcaagattc
     4141 aaaatttgct aagcattctc acacagcttt cttcaagtgt agaaaactac gtcgctctat
     4201 tagtgccaat gaccttagtt tcagaactcg tagtgatgaa gatctttctg aagaattact
     4261 gcaggactta aaaaaaatgc aattggaaca accttcaaca ttagaagaaa gccagaagga
     4321 tctgacttat acccagtcag agtcatttaa acctctccca tatgacctag aagatgatag
     4381 ttctgagaat aatgacttca gtacacttag tggaatgcta agatatataa acaaagaagt
     4441 gagactatta aaaaagtctt ctatgcaaac aggtgctggt tcaactcagg gagaaaattt
     4501 gtaattaaaa gaagacgttg atgtgatgaa aaatggaatt tttggtactg tgctgtgttt
     4561 acttattata tacagttcat acttcataga aactgttatt ttattgcttt tgaataaatt
     4621 ttaaggtttt taaagaaagt tctttcttct aaagcttact tatacttttt gtgaaaatta
     4681 attcacttta tttattgttt cggtttaaac ttgctacttt ccttttcttt attttttatg
     4741 tagaaacatt gttaaaatgc a
//
LOCUS       XM_032602726            5462 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 18
            (CCDC18), transcript variant X3, mRNA.
ACCESSION   XM_032602726
VERSION     XM_032602726.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5462
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5462
                     /gene="CCDC18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116738846"
     CDS             350..4714
                     /gene="CCDC18"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 18 isoform
                     X2"
                     /protein_id="XP_032458617.1"
                     /db_xref="GeneID:116738846"
                     /translation="MESSSSDYYNKDNEEESLLADVASLRHELKITEWSLQRLGEELS
                     SVSPRENSGYASNLSRSERLVLEGLSQPSQLGLLNYSPYKKVCKMPNSGTDFQKKPRD
                     KMSFSSSTPVDQEIKSLREKLNKLRQQNACLVSQNHSLMTKIESVHFELTQSRTKVSM
                     LESAQQQAAIVPILEEQIINLEAEVSAQDKVLREAEDKLQQSQKMVTEKEQSLQKSQE
                     ECIKLKVDLFEQSKQGKRAEQQRNEALYNAEELSKAFQHYKEKVAEKLEKVQAEEAIL
                     EKNLINCEKENKRLQEKCGLYKSELEILKEKLRQLKEENNDGKEKLRIMAVKNSEVMA
                     QLTESRQSILKLESELEDKDEILREKFSLMNENRELKVHIATQNERLDLCQQEIESSR
                     VELRSLEKIMSQLPLKREMFGFKSSLSKHQMSILSNKEGSYIGCCETNKMVISELRIK
                     LAMKEAEIQKLQANLTANQLSHNLIASNDNQESGKLNSLETEPVKLGGNQVESIKDQN
                     QHTVNKQYERERQRLASGIEELRDKLMQIEAENSDLKVNMAHRTSQFQLIQEELLEKA
                     SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKVRSLETN
                     INTEHEKICLAFEKAKKIHLDQHKEMEKQIERLESQLEKKEQQFKEQEKTISMLQQDI
                     ICKQHHLESLDRLLTESKGEMEKENMKKDEALKTLQNQVSEETIKVRQLDSALEICKE
                     ELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETTEQNVILQHTLQQQ
                     QQMLQQETFRNGELEDIQTKLEKQVSKLEQELQKQRESSAEKLRKMEEECEAATYEAD
                     LKKQKVIELTGTARQVKLEMDHYKEELYKMEKEIKHLKRDGENKAMHLSQLDMILEQT
                     KTELDKKTNAVKELEKLQHHTETELTEALQKREVLETELQNAHGELKNTLRQLQELRD
                     VLQKAQLSLEEKYTTITDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV
                     TYLDMTIRENRGEMEQKIIKLEGTLEKSELELKESNKQIESLNEKLQNAKEQLREKEF
                     ITLQNEQEISQLKKETEWTQGKMKEMEIVMKEQEQYIATQYKEAIDLEQELRLSQEQM
                     QNSHTELVEAHRQQVQAQREVERLSSELEEIKQLSKEKEAHGKHLAEELGASQVREAQ
                     LEARMQAEIKKLSAEVESVKEAYHLEMISHQEKHAKWKITADSQKTSVQQLNEQLEKT
                     KLELEEAQDTISNLHQQVQNRNKVIEATNEALLIKESELTRLQAKISGHERAEDIKFL
                     PAPFTSPVEIAPDIQDSKFAKHSHTAFFKCRKLRRSISANDLSFRTRSDEDLSEELLQ
                     DLKKMQLEQPSTLEESQKDLTYTQSESFKPLPYDLEDDSSENNDFSTLSGMLRYINKE
                     VRLLKKSSMQTGAGSTQE"
     misc_feature    <683..>2455
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1592..3934
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3605..>4351
                     /gene="CCDC18"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 ggcggggcgg ggcgtcccca acggctcctg cggcggtttg acctcgggcc agctggggtt
       61 cgctagtttc ctgcgtggtg tgtctggggt tccacgcttg gggtccggca gagggtccga
      121 agtttccgaa cgcagcggag atcgcggcgt gcgccgtcgt cgggaactag agatgttgca
      181 aagaaagcag aatggggacc ttaaccattg acttgtgttt gggagagtct tcttatttaa
      241 gcagaagcaa atttgtggaa acaaaagaga aaagaggata gaaacatttt ctctactaag
      301 attccatagc atctcattta atttcctgcc agtttcttcc aataaggaaa tggagtctag
      361 ttcctcagac tactataata aagacaatga agaagaaagt ttgctggcag atgttgcttc
      421 cttaagacat gaactgaaga taacagaatg gagtttgcag agattagggg aagagttatc
      481 tagtgttagc ccacgtgaaa attctggtta tgcctctaat ctctcaaggt ctgaaaggct
      541 cgttctggaa ggtctttctc agcctagcca gcttggactt ttgaattact caccttataa
      601 aaaagtttgt aaaatgccca atagtggtac tgattttcaa aaaaagccaa gagataagat
      661 gtctttttca tcttctaccc ctgtggatca ggaaatcaaa agtcttcgag agaaacttaa
      721 taaacttagg caacagaatg cttgtttggt ctcacagaat cattctttaa tgactaaaat
      781 agagtctgtc cactttgaat tgacacagtc aagaacaaaa gtttctatgc ttgaatctgc
      841 tcaacaacag gcagccattg taccaatctt agaagaacag attataaatt tggaagcaga
      901 agtttcagcc caagataaag ttttgagaga ggcagaagat aaattacagc agagtcagaa
      961 aatggtgact gaaaaggaac agagtttgca gaagtcccaa gaggaatgta taaagctgaa
     1021 ggtagactta tttgaacaaa gtaaacaagg aaagagagct gaacaacaaa ggaatgaagc
     1081 actatataat gctgaagagc taagtaaagc tttccaacat tataaagaaa aggtggctga
     1141 aaaactggaa aaggttcaag ctgaagaagc aatattagag aaaaatctaa ttaactgtga
     1201 aaaagaaaat aaaaggctac aggaaaagtg tggtctatat aaaagtgaac ttgaaattct
     1261 gaaagagaaa ttaaggcagt taaaagaaga aaataatgat ggaaaagaaa aattaaggat
     1321 catggcagtg aaaaattcag aagtcatggc acaactaact gaatctagac aaagtattct
     1381 taagctagag agtgagttag aggataaaga cgaaatactt agagaaaaat tttctctgat
     1441 gaatgaaaac cgagaattaa aagttcatat tgcaacacag aatgagagac tggatttgtg
     1501 tcagcaagaa atagaaagtt caagggtgga actgagaagt ttggaaaaaa ttatgtccca
     1561 gttgccatta aaaagagaaa tgtttggttt taaatcatct ctgtctaagc accagatgag
     1621 tattttgtca aacaaggaag gcagttacat tggctgctgt gagacaaata aaatggtgat
     1681 ttcggaattg aggattaagc ttgcaatgaa agaggcagaa attcaaaagc ttcaggcaaa
     1741 cctgactgct aatcaattat ctcacaatct tattgcttct aatgacaacc aagaaagtgg
     1801 caaattaaat agtttagaaa cagaacctgt aaaactagga ggtaatcaag tagaaagtat
     1861 aaaagatcaa aatcaacata ctgtgaacaa gcaatatgaa agagaaaggc aaagacttgc
     1921 ttctggaata gaagaattac gtgataagtt gatgcagata gaagctgaga attctgattt
     1981 gaaggttaac atggcccaca gaactagtca gtttcagctg attcaagagg agctgctaga
     2041 gaaagcttca aactctagca aacttgaaag tgaaatgaca aagaaatgtt ctcaactttt
     2101 aactctagag aaacagctag aagaaaaaat tgttgcttat tcctctattg ctgcaaaaaa
     2161 tgcggaacta gaacaggaac ttatggaaaa gaatgaaaag gttagaagtc tagaaaccaa
     2221 tatcaataca gagcatgaga aaatttgttt agcttttgaa aaggcaaaga aaattcatct
     2281 tgaccagcat aaagaaatgg aaaagcagat tgaaagactt gaatctcaac tagagaaaaa
     2341 agaacaacaa tttaaagaac aagaaaagac aatatccatg ttgcagcaag atataatatg
     2401 taaacaacat caccttgaat cactagacag actcttgacg gaaagcaaag gggaaatgga
     2461 aaaggaaaat atgaagaaag atgaagcttt gaaaacattg cagaaccaag tatctgaaga
     2521 aacaatcaag gtcagacaac tagattcagc attggaaatt tgtaaggaag aacttgcttt
     2581 gcatttgaac caattggaag gaaataaaga aaagtttgaa aaacagctaa agaagaaatc
     2641 tgaagaagta tattgtttac agaaagagct gaagattaaa aatcacagtc ttcaagagac
     2701 tactgagcaa aatgttattc tgcagcatac tcttcaacaa cagcagcaaa tgttacaaca
     2761 agagacattt agaaatggag agctagaaga cattcaaact aaacttgaaa aacaggtatc
     2821 aaaacttgaa caagagcttc agaaacaaag ggaaagttca gctgaaaagt tgagaaaaat
     2881 ggaggaagaa tgtgaagcag ccacatatga agcagattta aaaaagcaaa aagttattga
     2941 acttactggt actgccaggc aagtaaaact tgagatggat cactacaaag aagaactgta
     3001 taaaatggaa aaagaaataa agcacctaaa acgagatgga gaaaataaag caatgcatct
     3061 ctctcagtta gacatgatat tagaacagac aaagacagaa ctagataaga aaacaaacgc
     3121 tgtgaaggag ttagaaaagt tacagcacca cactgaaact gaactaacag aagccttgca
     3181 gaaacgggaa gtactagaga ctgaactaca aaatgctcat ggagaattaa agaatacttt
     3241 aagacaactc caggaattga gagatgttct acagaaggct cagttatcat tagaggaaaa
     3301 atacactact ataacggatc tcacagctga acttagggaa tgcaagatgg agattgaaga
     3361 caaaaagcaa gaactccttg aaatggatca ggcacttaag gagagaaatt gggagctaaa
     3421 gcaaagagca gctcaagtta catatttgga tatgactatt cgtgagaaca ggggagaaat
     3481 ggaacagaaa ataattaaat tagagggtac tctggagaaa tcagaattgg aacttaaaga
     3541 aagcaacaaa cagatagaaa gtttgaatga aaaattgcaa aatgccaaag aacaacttcg
     3601 agaaaaagag tttataacac tacaaaatga acaggagata agtcaactga aaaaagaaac
     3661 tgaatggaca caaggaaaga tgaaagaaat ggaaattgtt atgaaagagc aggaacagta
     3721 cattgcaact cagtacaagg aggccataga tttggagcaa gaattgaggc tatctcagga
     3781 gcagatgcag aactctcata cagaattggt ggaggctcat cgtcaacaag tccaagcaca
     3841 gagagaagta gaaaggctgt caagtgaact ggaggaaata aagcaactct ctaaagagaa
     3901 agaagctcat ggaaaacatt tagctgaaga gttgggggct tctcaagtac gtgaagctca
     3961 gttagaagca agaatgcaag cagaaatcaa gaaattgtca gcagaagtag aatctgtcaa
     4021 agaagcttat catctagaga tgatttcaca tcaggagaag catgcaaagt ggaagattac
     4081 tgctgattct caaaagactt ctgttcagca actaaatgaa cagttagaga aaacaaaact
     4141 agaattagaa gaagctcagg acactataag caatttgcat cagcaagtcc aaaacaggaa
     4201 taaagtaatt gaagctacaa acgaagcatt acttattaaa gaatcagaat taaccagatt
     4261 gcaagccaaa atttctggac atgaaagggc agaagacatc aagtttctac cagccccgtt
     4321 tacatctcca gtagaaattg cgcctgatat tcaagattca aaatttgcta agcattctca
     4381 cacagctttc ttcaagtgta gaaaactacg tcgctctatt agtgccaatg accttagttt
     4441 cagaactcgt agtgatgaag atctttctga agaattactg caggacttaa aaaaaatgca
     4501 attggaacaa ccttcaacat tagaagaaag ccagaaggat ctgacttata cccagtcaga
     4561 gtcatttaaa cctctcccat atgacctaga agatgatagt tctgagaata atgacttcag
     4621 tacacttagt ggaatgctaa gatatataaa caaagaagtg agactattaa aaaagtcttc
     4681 tatgcaaaca ggtgctggtt caactcagga atgatccagt agacgaggaa actgataaat
     4741 gcaagacaga gtggaagaag taaaatcctt aaggtaggct gaagtggaca agatccagaa
     4801 gagaagtaga attggccttg aataaaagaa ggggcagttt atccactgta ctgggaagga
     4861 aggcagaata taagggtaca gaaatacatg gagtggaaga aacacatggt ggcaggggag
     4921 gaattccatt attaattgcc tttgttttct tagtgaaata agaaacaggg ttatcagcta
     4981 aggcagggta gggtattaga ggtttaagaa gaggggaggt atatgaaaca gttatcttgt
     5041 agagtgggaa aatataaatg gactagggaa gtctagtagg attgccaagg agatagtttt
     5101 gttgtgtaga actgccatgc aaaccataag acatctggtg tcttttgtcc ctgtctattc
     5161 tgtgccagca acaggatgtc cctttttccc catcatagtg acaaccaaca agtactctta
     5221 cagatttcca gaatgttccc taggggagag tactgctccc tttaagaacc tctgctatat
     5281 tccaatggcc cttacagtca tggatataca agagtcttat ttttggtaaa atagaattta
     5341 tacagcataa atttgtgata gatttactat tctaactgct ttacatagat taactcattt
     5401 aatctttatt agcaaccttg tgataggtac tattattatg ctaataatac caaatcttct
     5461 at
//
LOCUS       XM_032602733            4801 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 18
            (CCDC18), transcript variant X4, mRNA.
ACCESSION   XM_032602733
VERSION     XM_032602733.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4801
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4801
                     /gene="CCDC18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116738846"
     CDS             354..4673
                     /gene="CCDC18"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 18 isoform
                     X3"
                     /protein_id="XP_032458624.1"
                     /db_xref="GeneID:116738846"
                     /translation="MESSSSDYYNKDNEEESLLADVASLRHELKITEWSLQRLGEELS
                     SVSPRENSGYASNLSRSERLVLEGLSQPSQLGLLNYSPYKKMSFSSSTPVDQEIKSLR
                     EKLNKLRQQNACLVSQNHSLMTKIESVHFELTQSRTKVSMLESAQQQAAIVPILEEQI
                     INLEAEVSAQDKVLREAEDKLQQSQKMVTEKEQSLQKSQEECIKLKVDLFEQSKQGKR
                     AEQQRNEALYNAEELSKAFQHYKEKVAEKLEKVQAEEAILEKNLINCEKENKRLQEKC
                     GLYKSELEILKEKLRQLKEENNDGKEKLRIMAVKNSEVMAQLTESRQSILKLESELED
                     KDEILREKFSLMNENRELKVHIATQNERLDLCQQEIESSRVELRSLEKIMSQLPLKRE
                     MFGFKSSLSKHQMSILSNKEGSYIGCCETNKMVISELRIKLAMKEAEIQKLQANLTAN
                     QLSHNLIASNDNQESGKLNSLETEPVKLGGNQVESIKDQNQHTVNKQYERERQRLASG
                     IEELRDKLMQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLL
                     TLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKVRSLETNINTEHEKICLAFEKAKKI
                     HLDQHKEMEKQIERLESQLEKKEQQFKEQEKTISMLQQDIICKQHHLESLDRLLTESK
                     GEMEKENMKKDEALKTLQNQVSEETIKVRQLDSALEICKEELALHLNQLEGNKEKFEK
                     QLKKKSEEVYCLQKELKIKNHSLQETTEQNVILQHTLQQQQQMLQQETFRNGELEDIQ
                     TKLEKQVSKLEQELQKQRESSAEKLRKMEEECEAATYEADLKKQKVIELTGTARQVKL
                     EMDHYKEELYKMEKEIKHLKRDGENKAMHLSQLDMILEQTKTELDKKTNAVKELEKLQ
                     HHTETELTEALQKREVLETELQNAHGELKNTLRQLQELRDVLQKAQLSLEEKYTTITD
                     LTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTYLDMTIRENRGEMEQKI
                     IKLEGTLEKSELELKESNKQIESLNEKLQNAKEQLREKEFITLQNEQEISQLKKETEW
                     TQGKMKEMEIVMKEQEQYIATQYKEAIDLEQELRLSQEQMQNSHTELVEAHRQQVQAQ
                     REVERLSSELEEIKQLSKEKEAHGKHLAEELGASQVREAQLEARMQAEIKKLSAEVES
                     VKEAYHLEMISHQEKHAKWKITADSQKTSVQQLNEQLEKTKLELEEAQDTISNLHQQV
                     QNRNKVIEATNEALLIKESELTRLQAKISGHERAEDIKFLPAPFTSPVEIAPDIQDSK
                     FAKHSHTAFFKCRKLRRSISANDLSFRTRSDEDLSEELLQDLKKMQLEQPSTLEESQK
                     DLTYTQSESFKPLPYDLEDDSSENNDFSTLSGMLRYINKEVRLLKKSSMQTGAGSTQG
                     ENL"
     misc_feature    <633..>2405
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1542..3884
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3555..>4301
                     /gene="CCDC18"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 cggcggcggg gcggggcgtc cccaacggct cctgcggcgg tttgacctcg ggccagctgg
       61 ggttcgctag tttcctgcgt ggtgtgtctg gggttccacg cttggggtcc ggcagagggt
      121 ccgaagtttc cgaacgcagc ggagatcgcg gcgtgcgccg tcgtcgggaa ctagagatgt
      181 tgcaaagaaa gcagaatggg gaccttaacc attgacttgt gtttgggaga gtcttcttat
      241 ttaagcagaa gcaaatttgt ggaaacaaaa gagaaaagag gatagaaaca ttttctctac
      301 taagattcca tagcatctca tttaatttcc tgccagtttc ttccaataag gaaatggagt
      361 ctagttcctc agactactat aataaagaca atgaagaaga aagtttgctg gcagatgttg
      421 cttccttaag acatgaactg aagataacag aatggagttt gcagagatta ggggaagagt
      481 tatctagtgt tagcccacgt gaaaattctg gttatgcctc taatctctca aggtctgaaa
      541 ggctcgttct ggaaggtctt tctcagccta gccagcttgg acttttgaat tactcacctt
      601 ataaaaaaat gtctttttca tcttctaccc ctgtggatca ggaaatcaaa agtcttcgag
      661 agaaacttaa taaacttagg caacagaatg cttgtttggt ctcacagaat cattctttaa
      721 tgactaaaat agagtctgtc cactttgaat tgacacagtc aagaacaaaa gtttctatgc
      781 ttgaatctgc tcaacaacag gcagccattg taccaatctt agaagaacag attataaatt
      841 tggaagcaga agtttcagcc caagataaag ttttgagaga ggcagaagat aaattacagc
      901 agagtcagaa aatggtgact gaaaaggaac agagtttgca gaagtcccaa gaggaatgta
      961 taaagctgaa ggtagactta tttgaacaaa gtaaacaagg aaagagagct gaacaacaaa
     1021 ggaatgaagc actatataat gctgaagagc taagtaaagc tttccaacat tataaagaaa
     1081 aggtggctga aaaactggaa aaggttcaag ctgaagaagc aatattagag aaaaatctaa
     1141 ttaactgtga aaaagaaaat aaaaggctac aggaaaagtg tggtctatat aaaagtgaac
     1201 ttgaaattct gaaagagaaa ttaaggcagt taaaagaaga aaataatgat ggaaaagaaa
     1261 aattaaggat catggcagtg aaaaattcag aagtcatggc acaactaact gaatctagac
     1321 aaagtattct taagctagag agtgagttag aggataaaga cgaaatactt agagaaaaat
     1381 tttctctgat gaatgaaaac cgagaattaa aagttcatat tgcaacacag aatgagagac
     1441 tggatttgtg tcagcaagaa atagaaagtt caagggtgga actgagaagt ttggaaaaaa
     1501 ttatgtccca gttgccatta aaaagagaaa tgtttggttt taaatcatct ctgtctaagc
     1561 accagatgag tattttgtca aacaaggaag gcagttacat tggctgctgt gagacaaata
     1621 aaatggtgat ttcggaattg aggattaagc ttgcaatgaa agaggcagaa attcaaaagc
     1681 ttcaggcaaa cctgactgct aatcaattat ctcacaatct tattgcttct aatgacaacc
     1741 aagaaagtgg caaattaaat agtttagaaa cagaacctgt aaaactagga ggtaatcaag
     1801 tagaaagtat aaaagatcaa aatcaacata ctgtgaacaa gcaatatgaa agagaaaggc
     1861 aaagacttgc ttctggaata gaagaattac gtgataagtt gatgcagata gaagctgaga
     1921 attctgattt gaaggttaac atggcccaca gaactagtca gtttcagctg attcaagagg
     1981 agctgctaga gaaagcttca aactctagca aacttgaaag tgaaatgaca aagaaatgtt
     2041 ctcaactttt aactctagag aaacagctag aagaaaaaat tgttgcttat tcctctattg
     2101 ctgcaaaaaa tgcggaacta gaacaggaac ttatggaaaa gaatgaaaag gttagaagtc
     2161 tagaaaccaa tatcaataca gagcatgaga aaatttgttt agcttttgaa aaggcaaaga
     2221 aaattcatct tgaccagcat aaagaaatgg aaaagcagat tgaaagactt gaatctcaac
     2281 tagagaaaaa agaacaacaa tttaaagaac aagaaaagac aatatccatg ttgcagcaag
     2341 atataatatg taaacaacat caccttgaat cactagacag actcttgacg gaaagcaaag
     2401 gggaaatgga aaaggaaaat atgaagaaag atgaagcttt gaaaacattg cagaaccaag
     2461 tatctgaaga aacaatcaag gtcagacaac tagattcagc attggaaatt tgtaaggaag
     2521 aacttgcttt gcatttgaac caattggaag gaaataaaga aaagtttgaa aaacagctaa
     2581 agaagaaatc tgaagaagta tattgtttac agaaagagct gaagattaaa aatcacagtc
     2641 ttcaagagac tactgagcaa aatgttattc tgcagcatac tcttcaacaa cagcagcaaa
     2701 tgttacaaca agagacattt agaaatggag agctagaaga cattcaaact aaacttgaaa
     2761 aacaggtatc aaaacttgaa caagagcttc agaaacaaag ggaaagttca gctgaaaagt
     2821 tgagaaaaat ggaggaagaa tgtgaagcag ccacatatga agcagattta aaaaagcaaa
     2881 aagttattga acttactggt actgccaggc aagtaaaact tgagatggat cactacaaag
     2941 aagaactgta taaaatggaa aaagaaataa agcacctaaa acgagatgga gaaaataaag
     3001 caatgcatct ctctcagtta gacatgatat tagaacagac aaagacagaa ctagataaga
     3061 aaacaaacgc tgtgaaggag ttagaaaagt tacagcacca cactgaaact gaactaacag
     3121 aagccttgca gaaacgggaa gtactagaga ctgaactaca aaatgctcat ggagaattaa
     3181 agaatacttt aagacaactc caggaattga gagatgttct acagaaggct cagttatcat
     3241 tagaggaaaa atacactact ataacggatc tcacagctga acttagggaa tgcaagatgg
     3301 agattgaaga caaaaagcaa gaactccttg aaatggatca ggcacttaag gagagaaatt
     3361 gggagctaaa gcaaagagca gctcaagtta catatttgga tatgactatt cgtgagaaca
     3421 ggggagaaat ggaacagaaa ataattaaat tagagggtac tctggagaaa tcagaattgg
     3481 aacttaaaga aagcaacaaa cagatagaaa gtttgaatga aaaattgcaa aatgccaaag
     3541 aacaacttcg agaaaaagag tttataacac tacaaaatga acaggagata agtcaactga
     3601 aaaaagaaac tgaatggaca caaggaaaga tgaaagaaat ggaaattgtt atgaaagagc
     3661 aggaacagta cattgcaact cagtacaagg aggccataga tttggagcaa gaattgaggc
     3721 tatctcagga gcagatgcag aactctcata cagaattggt ggaggctcat cgtcaacaag
     3781 tccaagcaca gagagaagta gaaaggctgt caagtgaact ggaggaaata aagcaactct
     3841 ctaaagagaa agaagctcat ggaaaacatt tagctgaaga gttgggggct tctcaagtac
     3901 gtgaagctca gttagaagca agaatgcaag cagaaatcaa gaaattgtca gcagaagtag
     3961 aatctgtcaa agaagcttat catctagaga tgatttcaca tcaggagaag catgcaaagt
     4021 ggaagattac tgctgattct caaaagactt ctgttcagca actaaatgaa cagttagaga
     4081 aaacaaaact agaattagaa gaagctcagg acactataag caatttgcat cagcaagtcc
     4141 aaaacaggaa taaagtaatt gaagctacaa acgaagcatt acttattaaa gaatcagaat
     4201 taaccagatt gcaagccaaa atttctggac atgaaagggc agaagacatc aagtttctac
     4261 cagccccgtt tacatctcca gtagaaattg cgcctgatat tcaagattca aaatttgcta
     4321 agcattctca cacagctttc ttcaagtgta gaaaactacg tcgctctatt agtgccaatg
     4381 accttagttt cagaactcgt agtgatgaag atctttctga agaattactg caggacttaa
     4441 aaaaaatgca attggaacaa ccttcaacat tagaagaaag ccagaaggat ctgacttata
     4501 cccagtcaga gtcatttaaa cctctcccat atgacctaga agatgatagt tctgagaata
     4561 atgacttcag tacacttagt ggaatgctaa gatatataaa caaagaagtg agactattaa
     4621 aaaagtcttc tatgcaaaca ggtgctggtt caactcaggg agaaaatttg taattaaaag
     4681 aagacgttga tgtgatgaaa aatggaattt ttggtactgt gctgtgttta cttattatat
     4741 acagttcata cttcatagaa actgttattt tattgctttt gaataaattt taaggttttt
     4801 a
//
LOCUS       XM_032602741            4716 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 18
            (CCDC18), transcript variant X5, mRNA.
ACCESSION   XM_032602741
VERSION     XM_032602741.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4716
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4716
                     /gene="CCDC18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116738846"
     CDS             350..4588
                     /gene="CCDC18"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 18 isoform
                     X4"
                     /protein_id="XP_032458632.1"
                     /db_xref="GeneID:116738846"
                     /translation="MESSSSDYYNKDNEEESLLADVASLRHELKITEWSLQRLGEELS
                     SVSPRENSGYASNLSRSERLVLEGLSQPSQLGLLNYSPYKKVCKMPNSGTDFQKKPRD
                     KMSFSSSTPVDQEIKSLREKLNKLRQQNACLVSQNHSLMTKIESVHFELTQSRTKVSM
                     LESAQQQAAIVPILEEQIINLEAEVSAQDKVLREAEDKLQQSQKMVTEKEQSLQKSQE
                     ECIKLKVDLFEQSKQGKRAEQQRNEALYNAEELSKAFQHYKEKVAEKLEKVQAEEAIL
                     EKNLINCEKENKRLQEKCGLYKSELEILKEKLRQLKEENNDGKEKLRIMAVKNSEVMA
                     QLTESRQSILKLESELEDKDEILREKFSLMNENRELKVHIATQNERLDLCQQEIESSR
                     VELRSLEKIMSQLPLKREMFGFKSSLSKHQMSILSNKEGSYIGCCETNKMVISELRIK
                     LAMKEAEIQKLQANLTANQLSHNLIASNDNQESGKLNSLETEPVKLGGNQVESIKDQN
                     QHTVNKQYERERQRLASGIEELRDKLMQIEAENSDLKVNMAHRTSQFQLIQEELLEKA
                     SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKVRSLETN
                     INTEHEKICLAFEKAKKIHLDQHKEMEKQIEREMEKENMKKDEALKTLQNQVSEETIK
                     VRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETT
                     EQNVILQHTLQQQQQMLQQETFRNGELEDIQTKLEKQVSKLEQELQKQRESSAEKLRK
                     MEEECEAATYEADLKKQKVIELTGTARQVKLEMDHYKEELYKMEKEIKHLKRDGENKA
                     MHLSQLDMILEQTKTELDKKTNAVKELEKLQHHTETELTEALQKREVLETELQNAHGE
                     LKNTLRQLQELRDVLQKAQLSLEEKYTTITDLTAELRECKMEIEDKKQELLEMDQALK
                     ERNWELKQRAAQVTYLDMTIRENRGEMEQKIIKLEGTLEKSELELKESNKQIESLNEK
                     LQNAKEQLREKEFITLQNEQEISQLKKETEWTQGKMKEMEIVMKEQEQYIATQYKEAI
                     DLEQELRLSQEQMQNSHTELVEAHRQQVQAQREVERLSSELEEIKQLSKEKEAHGKHL
                     AEELGASQVREAQLEARMQAEIKKLSAEVESVKEAYHLEMISHQEKHAKWKITADSQK
                     TSVQQLNEQLEKTKLELEEAQDTISNLHQQVQNRNKVIEATNEALLIKESELTRLQAK
                     ISGHERAEDIKFLPAPFTSPVEIAPDIQDSKFAKHSHTAFFKCRKLRRSISANDLSFR
                     TRSDEDLSEELLQDLKKMQLEQPSTLEESQKDLTYTQSESFKPLPYDLEDDSSENNDF
                     STLSGMLRYINKEVRLLKKSSMQTGAGSTQGENL"
     misc_feature    <683..2539
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <1892..3994
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 ggcggggcgg ggcgtcccca acggctcctg cggcggtttg acctcgggcc agctggggtt
       61 cgctagtttc ctgcgtggtg tgtctggggt tccacgcttg gggtccggca gagggtccga
      121 agtttccgaa cgcagcggag atcgcggcgt gcgccgtcgt cgggaactag agatgttgca
      181 aagaaagcag aatggggacc ttaaccattg acttgtgttt gggagagtct tcttatttaa
      241 gcagaagcaa atttgtggaa acaaaagaga aaagaggata gaaacatttt ctctactaag
      301 attccatagc atctcattta atttcctgcc agtttcttcc aataaggaaa tggagtctag
      361 ttcctcagac tactataata aagacaatga agaagaaagt ttgctggcag atgttgcttc
      421 cttaagacat gaactgaaga taacagaatg gagtttgcag agattagggg aagagttatc
      481 tagtgttagc ccacgtgaaa attctggtta tgcctctaat ctctcaaggt ctgaaaggct
      541 cgttctggaa ggtctttctc agcctagcca gcttggactt ttgaattact caccttataa
      601 aaaagtttgt aaaatgccca atagtggtac tgattttcaa aaaaagccaa gagataagat
      661 gtctttttca tcttctaccc ctgtggatca ggaaatcaaa agtcttcgag agaaacttaa
      721 taaacttagg caacagaatg cttgtttggt ctcacagaat cattctttaa tgactaaaat
      781 agagtctgtc cactttgaat tgacacagtc aagaacaaaa gtttctatgc ttgaatctgc
      841 tcaacaacag gcagccattg taccaatctt agaagaacag attataaatt tggaagcaga
      901 agtttcagcc caagataaag ttttgagaga ggcagaagat aaattacagc agagtcagaa
      961 aatggtgact gaaaaggaac agagtttgca gaagtcccaa gaggaatgta taaagctgaa
     1021 ggtagactta tttgaacaaa gtaaacaagg aaagagagct gaacaacaaa ggaatgaagc
     1081 actatataat gctgaagagc taagtaaagc tttccaacat tataaagaaa aggtggctga
     1141 aaaactggaa aaggttcaag ctgaagaagc aatattagag aaaaatctaa ttaactgtga
     1201 aaaagaaaat aaaaggctac aggaaaagtg tggtctatat aaaagtgaac ttgaaattct
     1261 gaaagagaaa ttaaggcagt taaaagaaga aaataatgat ggaaaagaaa aattaaggat
     1321 catggcagtg aaaaattcag aagtcatggc acaactaact gaatctagac aaagtattct
     1381 taagctagag agtgagttag aggataaaga cgaaatactt agagaaaaat tttctctgat
     1441 gaatgaaaac cgagaattaa aagttcatat tgcaacacag aatgagagac tggatttgtg
     1501 tcagcaagaa atagaaagtt caagggtgga actgagaagt ttggaaaaaa ttatgtccca
     1561 gttgccatta aaaagagaaa tgtttggttt taaatcatct ctgtctaagc accagatgag
     1621 tattttgtca aacaaggaag gcagttacat tggctgctgt gagacaaata aaatggtgat
     1681 ttcggaattg aggattaagc ttgcaatgaa agaggcagaa attcaaaagc ttcaggcaaa
     1741 cctgactgct aatcaattat ctcacaatct tattgcttct aatgacaacc aagaaagtgg
     1801 caaattaaat agtttagaaa cagaacctgt aaaactagga ggtaatcaag tagaaagtat
     1861 aaaagatcaa aatcaacata ctgtgaacaa gcaatatgaa agagaaaggc aaagacttgc
     1921 ttctggaata gaagaattac gtgataagtt gatgcagata gaagctgaga attctgattt
     1981 gaaggttaac atggcccaca gaactagtca gtttcagctg attcaagagg agctgctaga
     2041 gaaagcttca aactctagca aacttgaaag tgaaatgaca aagaaatgtt ctcaactttt
     2101 aactctagag aaacagctag aagaaaaaat tgttgcttat tcctctattg ctgcaaaaaa
     2161 tgcggaacta gaacaggaac ttatggaaaa gaatgaaaag gttagaagtc tagaaaccaa
     2221 tatcaataca gagcatgaga aaatttgttt agcttttgaa aaggcaaaga aaattcatct
     2281 tgaccagcat aaagaaatgg aaaagcagat tgaaagagaa atggaaaagg aaaatatgaa
     2341 gaaagatgaa gctttgaaaa cattgcagaa ccaagtatct gaagaaacaa tcaaggtcag
     2401 acaactagat tcagcattgg aaatttgtaa ggaagaactt gctttgcatt tgaaccaatt
     2461 ggaaggaaat aaagaaaagt ttgaaaaaca gctaaagaag aaatctgaag aagtatattg
     2521 tttacagaaa gagctgaaga ttaaaaatca cagtcttcaa gagactactg agcaaaatgt
     2581 tattctgcag catactcttc aacaacagca gcaaatgtta caacaagaga catttagaaa
     2641 tggagagcta gaagacattc aaactaaact tgaaaaacag gtatcaaaac ttgaacaaga
     2701 gcttcagaaa caaagggaaa gttcagctga aaagttgaga aaaatggagg aagaatgtga
     2761 agcagccaca tatgaagcag atttaaaaaa gcaaaaagtt attgaactta ctggtactgc
     2821 caggcaagta aaacttgaga tggatcacta caaagaagaa ctgtataaaa tggaaaaaga
     2881 aataaagcac ctaaaacgag atggagaaaa taaagcaatg catctctctc agttagacat
     2941 gatattagaa cagacaaaga cagaactaga taagaaaaca aacgctgtga aggagttaga
     3001 aaagttacag caccacactg aaactgaact aacagaagcc ttgcagaaac gggaagtact
     3061 agagactgaa ctacaaaatg ctcatggaga attaaagaat actttaagac aactccagga
     3121 attgagagat gttctacaga aggctcagtt atcattagag gaaaaataca ctactataac
     3181 ggatctcaca gctgaactta gggaatgcaa gatggagatt gaagacaaaa agcaagaact
     3241 ccttgaaatg gatcaggcac ttaaggagag aaattgggag ctaaagcaaa gagcagctca
     3301 agttacatat ttggatatga ctattcgtga gaacagggga gaaatggaac agaaaataat
     3361 taaattagag ggtactctgg agaaatcaga attggaactt aaagaaagca acaaacagat
     3421 agaaagtttg aatgaaaaat tgcaaaatgc caaagaacaa cttcgagaaa aagagtttat
     3481 aacactacaa aatgaacagg agataagtca actgaaaaaa gaaactgaat ggacacaagg
     3541 aaagatgaaa gaaatggaaa ttgttatgaa agagcaggaa cagtacattg caactcagta
     3601 caaggaggcc atagatttgg agcaagaatt gaggctatct caggagcaga tgcagaactc
     3661 tcatacagaa ttggtggagg ctcatcgtca acaagtccaa gcacagagag aagtagaaag
     3721 gctgtcaagt gaactggagg aaataaagca actctctaaa gagaaagaag ctcatggaaa
     3781 acatttagct gaagagttgg gggcttctca agtacgtgaa gctcagttag aagcaagaat
     3841 gcaagcagaa atcaagaaat tgtcagcaga agtagaatct gtcaaagaag cttatcatct
     3901 agagatgatt tcacatcagg agaagcatgc aaagtggaag attactgctg attctcaaaa
     3961 gacttctgtt cagcaactaa atgaacagtt agagaaaaca aaactagaat tagaagaagc
     4021 tcaggacact ataagcaatt tgcatcagca agtccaaaac aggaataaag taattgaagc
     4081 tacaaacgaa gcattactta ttaaagaatc agaattaacc agattgcaag ccaaaatttc
     4141 tggacatgaa agggcagaag acatcaagtt tctaccagcc ccgtttacat ctccagtaga
     4201 aattgcgcct gatattcaag attcaaaatt tgctaagcat tctcacacag ctttcttcaa
     4261 gtgtagaaaa ctacgtcgct ctattagtgc caatgacctt agtttcagaa ctcgtagtga
     4321 tgaagatctt tctgaagaat tactgcagga cttaaaaaaa atgcaattgg aacaaccttc
     4381 aacattagaa gaaagccaga aggatctgac ttatacccag tcagagtcat ttaaacctct
     4441 cccatatgac ctagaagatg atagttctga gaataatgac ttcagtacac ttagtggaat
     4501 gctaagatat ataaacaaag aagtgagact attaaaaaag tcttctatgc aaacaggtgc
     4561 tggttcaact cagggagaaa atttgtaatt aaaagaagac gttgatgtga tgaaaaatgg
     4621 aatttttggt actgtgctgt gtttacttat tatatacagt tcatacttca tagaaactgt
     4681 tattttattg cttttgaata aattttaagg ttttta
//
LOCUS       XM_032602747            4650 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 18
            (CCDC18), transcript variant X6, mRNA.
ACCESSION   XM_032602747
VERSION     XM_032602747.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4650
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4650
                     /gene="CCDC18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116738846"
     CDS             350..4522
                     /gene="CCDC18"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 18 isoform
                     X5"
                     /protein_id="XP_032458638.1"
                     /db_xref="GeneID:116738846"
                     /translation="MESSSSDYYNKDNEEESLLADVASLRHELKITEWSLQRLGEELS
                     SVSPRENSGYASNLSRSERLVLEGLSQPSQLGLLNYSPYKKVCKMPNSGTDFQKKPRD
                     KMSFSSSTPVDQEIKSLREKLNKLRQQNACLVSQNHSLMTKIESVHFELTQSRTKVSM
                     LESAQQQAAIVPILEEQIINLEAEVSAQDKVLREAEDKLQQSQKMVTEKEQSLQKSQE
                     ECIKLKVDLFEQSKQGKRAEQQRNEALYNAEELSKAFQHYKEKVAEKLEKVQAEEAIL
                     EKNLINCEKENKRLQEKCGLYKSELEILKEKLRQLKEENNDGKEKLRIMAVKNSEVMA
                     QLTESRQSILKLESELEDKDEILREKFSLMNENRELKVHIATQNERLDLCQQEIESSR
                     VELRSLEKIMSQLPLKREMFGFKSSLSKHQMSILSNKEGSYIGCCETNKMVISELRIK
                     LAMKEAEIQKLQANLTANQLSHNLIASNDNQESGKLNSLETEPVKLGGNQVESIKDQN
                     QHTVNKQYERERQRLASGIEELRDKLMQIEAENSDLKVNMAHRTSQFQLIQEELLEKA
                     SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKVRSLETN
                     INTEHEKICLAFEKAKKIHLDQHKEMEKQIERLESQLEKKEQQFKEQEKTISMLQQDI
                     ICKQHHLESLDRLLTESKGEMEKENMKKDEALKTLQNQVSEETIKVRQLDSALEICKE
                     ELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETTEQNVILQHTLQQQ
                     QQMLQQETFRNGELEDIQTKLEKQVSKLEQELQKQRESSAEKLRKMEEECEAATYEAD
                     LKKQKVIELTGTARQVKLEMDHYKEELYKMEKEIKHLKRDGENKAMHLSQLDMILEQT
                     KTELDKKTNAVKELEKLQHHTETELTEALQKREVLETELQNAHGELKNTLRQLQELRD
                     VLQKAQLSLEEKYTTITDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV
                     TYLDMTIRENRGEMEQKIIKLEGTLEKSELELKESNKQIESLNEKLQNAKEQLREKEF
                     ITLQNEQEISQLKKETEWTQGKMKEMEIVMKEQEQYIATQYKEAIDLEQELRLSQEQM
                     QNSHTELVEAHRQQVQAQREVERLSSELEEIKQLSKEKEAHGKHLAEELGASQVREAQ
                     LEARMQAEIKKLSAEVESVKEAYHLEESELTRLQAKISGHERAEDIKFLPAPFTSPVE
                     IAPDIQDSKFAKHSHTAFFKCRKLRRSISANDLSFRTRSDEDLSEELLQDLKKMQLEQ
                     PSTLEESQKDLTYTQSESFKPLPYDLEDDSSENNDFSTLSGMLRYINKEVRLLKKSSM
                     QTGAGSTQGENL"
     misc_feature    <683..>2455
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1592..3934
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 ggcggggcgg ggcgtcccca acggctcctg cggcggtttg acctcgggcc agctggggtt
       61 cgctagtttc ctgcgtggtg tgtctggggt tccacgcttg gggtccggca gagggtccga
      121 agtttccgaa cgcagcggag atcgcggcgt gcgccgtcgt cgggaactag agatgttgca
      181 aagaaagcag aatggggacc ttaaccattg acttgtgttt gggagagtct tcttatttaa
      241 gcagaagcaa atttgtggaa acaaaagaga aaagaggata gaaacatttt ctctactaag
      301 attccatagc atctcattta atttcctgcc agtttcttcc aataaggaaa tggagtctag
      361 ttcctcagac tactataata aagacaatga agaagaaagt ttgctggcag atgttgcttc
      421 cttaagacat gaactgaaga taacagaatg gagtttgcag agattagggg aagagttatc
      481 tagtgttagc ccacgtgaaa attctggtta tgcctctaat ctctcaaggt ctgaaaggct
      541 cgttctggaa ggtctttctc agcctagcca gcttggactt ttgaattact caccttataa
      601 aaaagtttgt aaaatgccca atagtggtac tgattttcaa aaaaagccaa gagataagat
      661 gtctttttca tcttctaccc ctgtggatca ggaaatcaaa agtcttcgag agaaacttaa
      721 taaacttagg caacagaatg cttgtttggt ctcacagaat cattctttaa tgactaaaat
      781 agagtctgtc cactttgaat tgacacagtc aagaacaaaa gtttctatgc ttgaatctgc
      841 tcaacaacag gcagccattg taccaatctt agaagaacag attataaatt tggaagcaga
      901 agtttcagcc caagataaag ttttgagaga ggcagaagat aaattacagc agagtcagaa
      961 aatggtgact gaaaaggaac agagtttgca gaagtcccaa gaggaatgta taaagctgaa
     1021 ggtagactta tttgaacaaa gtaaacaagg aaagagagct gaacaacaaa ggaatgaagc
     1081 actatataat gctgaagagc taagtaaagc tttccaacat tataaagaaa aggtggctga
     1141 aaaactggaa aaggttcaag ctgaagaagc aatattagag aaaaatctaa ttaactgtga
     1201 aaaagaaaat aaaaggctac aggaaaagtg tggtctatat aaaagtgaac ttgaaattct
     1261 gaaagagaaa ttaaggcagt taaaagaaga aaataatgat ggaaaagaaa aattaaggat
     1321 catggcagtg aaaaattcag aagtcatggc acaactaact gaatctagac aaagtattct
     1381 taagctagag agtgagttag aggataaaga cgaaatactt agagaaaaat tttctctgat
     1441 gaatgaaaac cgagaattaa aagttcatat tgcaacacag aatgagagac tggatttgtg
     1501 tcagcaagaa atagaaagtt caagggtgga actgagaagt ttggaaaaaa ttatgtccca
     1561 gttgccatta aaaagagaaa tgtttggttt taaatcatct ctgtctaagc accagatgag
     1621 tattttgtca aacaaggaag gcagttacat tggctgctgt gagacaaata aaatggtgat
     1681 ttcggaattg aggattaagc ttgcaatgaa agaggcagaa attcaaaagc ttcaggcaaa
     1741 cctgactgct aatcaattat ctcacaatct tattgcttct aatgacaacc aagaaagtgg
     1801 caaattaaat agtttagaaa cagaacctgt aaaactagga ggtaatcaag tagaaagtat
     1861 aaaagatcaa aatcaacata ctgtgaacaa gcaatatgaa agagaaaggc aaagacttgc
     1921 ttctggaata gaagaattac gtgataagtt gatgcagata gaagctgaga attctgattt
     1981 gaaggttaac atggcccaca gaactagtca gtttcagctg attcaagagg agctgctaga
     2041 gaaagcttca aactctagca aacttgaaag tgaaatgaca aagaaatgtt ctcaactttt
     2101 aactctagag aaacagctag aagaaaaaat tgttgcttat tcctctattg ctgcaaaaaa
     2161 tgcggaacta gaacaggaac ttatggaaaa gaatgaaaag gttagaagtc tagaaaccaa
     2221 tatcaataca gagcatgaga aaatttgttt agcttttgaa aaggcaaaga aaattcatct
     2281 tgaccagcat aaagaaatgg aaaagcagat tgaaagactt gaatctcaac tagagaaaaa
     2341 agaacaacaa tttaaagaac aagaaaagac aatatccatg ttgcagcaag atataatatg
     2401 taaacaacat caccttgaat cactagacag actcttgacg gaaagcaaag gggaaatgga
     2461 aaaggaaaat atgaagaaag atgaagcttt gaaaacattg cagaaccaag tatctgaaga
     2521 aacaatcaag gtcagacaac tagattcagc attggaaatt tgtaaggaag aacttgcttt
     2581 gcatttgaac caattggaag gaaataaaga aaagtttgaa aaacagctaa agaagaaatc
     2641 tgaagaagta tattgtttac agaaagagct gaagattaaa aatcacagtc ttcaagagac
     2701 tactgagcaa aatgttattc tgcagcatac tcttcaacaa cagcagcaaa tgttacaaca
     2761 agagacattt agaaatggag agctagaaga cattcaaact aaacttgaaa aacaggtatc
     2821 aaaacttgaa caagagcttc agaaacaaag ggaaagttca gctgaaaagt tgagaaaaat
     2881 ggaggaagaa tgtgaagcag ccacatatga agcagattta aaaaagcaaa aagttattga
     2941 acttactggt actgccaggc aagtaaaact tgagatggat cactacaaag aagaactgta
     3001 taaaatggaa aaagaaataa agcacctaaa acgagatgga gaaaataaag caatgcatct
     3061 ctctcagtta gacatgatat tagaacagac aaagacagaa ctagataaga aaacaaacgc
     3121 tgtgaaggag ttagaaaagt tacagcacca cactgaaact gaactaacag aagccttgca
     3181 gaaacgggaa gtactagaga ctgaactaca aaatgctcat ggagaattaa agaatacttt
     3241 aagacaactc caggaattga gagatgttct acagaaggct cagttatcat tagaggaaaa
     3301 atacactact ataacggatc tcacagctga acttagggaa tgcaagatgg agattgaaga
     3361 caaaaagcaa gaactccttg aaatggatca ggcacttaag gagagaaatt gggagctaaa
     3421 gcaaagagca gctcaagtta catatttgga tatgactatt cgtgagaaca ggggagaaat
     3481 ggaacagaaa ataattaaat tagagggtac tctggagaaa tcagaattgg aacttaaaga
     3541 aagcaacaaa cagatagaaa gtttgaatga aaaattgcaa aatgccaaag aacaacttcg
     3601 agaaaaagag tttataacac tacaaaatga acaggagata agtcaactga aaaaagaaac
     3661 tgaatggaca caaggaaaga tgaaagaaat ggaaattgtt atgaaagagc aggaacagta
     3721 cattgcaact cagtacaagg aggccataga tttggagcaa gaattgaggc tatctcagga
     3781 gcagatgcag aactctcata cagaattggt ggaggctcat cgtcaacaag tccaagcaca
     3841 gagagaagta gaaaggctgt caagtgaact ggaggaaata aagcaactct ctaaagagaa
     3901 agaagctcat ggaaaacatt tagctgaaga gttgggggct tctcaagtac gtgaagctca
     3961 gttagaagca agaatgcaag cagaaatcaa gaaattgtca gcagaagtag aatctgtcaa
     4021 agaagcttat catctagagg aatcagaatt aaccagattg caagccaaaa tttctggaca
     4081 tgaaagggca gaagacatca agtttctacc agccccgttt acatctccag tagaaattgc
     4141 gcctgatatt caagattcaa aatttgctaa gcattctcac acagctttct tcaagtgtag
     4201 aaaactacgt cgctctatta gtgccaatga ccttagtttc agaactcgta gtgatgaaga
     4261 tctttctgaa gaattactgc aggacttaaa aaaaatgcaa ttggaacaac cttcaacatt
     4321 agaagaaagc cagaaggatc tgacttatac ccagtcagag tcatttaaac ctctcccata
     4381 tgacctagaa gatgatagtt ctgagaataa tgacttcagt acacttagtg gaatgctaag
     4441 atatataaac aaagaagtga gactattaaa aaagtcttct atgcaaacag gtgctggttc
     4501 aactcaggga gaaaatttgt aattaaaaga agacgttgat gtgatgaaaa atggaatttt
     4561 tggtactgtg ctgtgtttac ttattatata cagttcatac ttcatagaaa ctgttatttt
     4621 attgcttttg aataaatttt aaggttttta
//
LOCUS       XM_032602757            4684 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 18
            (CCDC18), transcript variant X7, mRNA.
ACCESSION   XM_032602757
VERSION     XM_032602757.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4684
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4684
                     /gene="CCDC18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116738846"
     CDS             492..4556
                     /gene="CCDC18"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 18 isoform
                     X6"
                     /protein_id="XP_032458648.1"
                     /db_xref="GeneID:116738846"
                     /translation="MSFSSSTPVDQEIKSLREKLNKLRQQNACLVSQNHSLMTKIESV
                     HFELTQSRTKVSMLESAQQQAAIVPILEEQIINLEAEVSAQDKVLREAEDKLQQSQKM
                     VTEKEQSLQKSQEECIKLKVDLFEQSKQGKRAEQQRNEALYNAEELSKAFQHYKEKVA
                     EKLEKVQAEEAILEKNLINCEKENKRLQEKCGLYKSELEILKEKLRQLKEENNDGKEK
                     LRIMAVKNSEVMAQLTESRQSILKLESELEDKDEILREKFSLMNENRELKVHIATQNE
                     RLDLCQQEIESSRVELRSLEKIMSQLPLKREMFGFKSSLSKHQMSILSNKEGSYIGCC
                     ETNKMVISELRIKLAMKEAEIQKLQANLTANQLSHNLIASNDNQESGKLNSLETEPVK
                     LGGNQVESIKDQNQHTVNKQYERERQRLASGIEELRDKLMQIEAENSDLKVNMAHRTS
                     QFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQEL
                     MEKNEKVRSLETNINTEHEKICLAFEKAKKIHLDQHKEMEKQIERLESQLEKKEQQFK
                     EQEKTISMLQQDIICKQHHLESLDRLLTESKGEMEKENMKKDEALKTLQNQVSEETIK
                     VRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETT
                     EQNVILQHTLQQQQQMLQQETFRNGELEDIQTKLEKQVSKLEQELQKQRESSAEKLRK
                     MEEECEAATYEADLKKQKVIELTGTARQVKLEMDHYKEELYKMEKEIKHLKRDGENKA
                     MHLSQLDMILEQTKTELDKKTNAVKELEKLQHHTETELTEALQKREVLETELQNAHGE
                     LKNTLRQLQELRDVLQKAQLSLEEKYTTITDLTAELRECKMEIEDKKQELLEMDQALK
                     ERNWELKQRAAQVTYLDMTIRENRGEMEQKIIKLEGTLEKSELELKESNKQIESLNEK
                     LQNAKEQLREKEFITLQNEQEISQLKKETEWTQGKMKEMEIVMKEQEQYIATQYKEAI
                     DLEQELRLSQEQMQNSHTELVEAHRQQVQAQREVERLSSELEEIKQLSKEKEAHGKHL
                     AEELGASQVREAQLEARMQAEIKKLSAEVESVKEAYHLEMISHQEKHAKWKITADSQK
                     TSVQQLNEQLEKTKLELEEAQDTISNLHQQVQNRNKVIEATNEALLIKESELTRLQAK
                     ISGHERAEDIKFLPAPFTSPVEIAPDIQDSKFAKHSHTAFFKCRKLRRSISANDLSFR
                     TRSDEDLSEELLQDLKKMQLEQPSTLEESQKDLTYTQSESFKPLPYDLEDDSSENNDF
                     STLSGMLRYINKEVRLLKKSSMQTGAGSTQGENL"
     misc_feature    <516..>2288
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1425..3767
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3438..>4184
                     /gene="CCDC18"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 ggggcggcgg cggggcgggg cgtccccaac ggctcctgcg gcggtttgac ctcgggccag
       61 ctggggttcg ctagtttcct gcgtggtgtg tctggggttc cacgcttggg gtccggcaga
      121 gggtccgaag tttccgaacg cagcggagat cgcggcgtgc gccgtcgtcg ggaactagag
      181 atgttgcaaa gaaagcagaa tggggacctt aaccattgac ttgtgtttgg gagagtcttc
      241 ttatttaagc agaagcaaat ttgtggaaac aaaagagaaa agaggataga aacattttct
      301 ctactaagat tccatagcat ctcatttaat ttcctgccag tttcttccaa taaggaaatg
      361 gagtctagtt cctcagacta ctataataaa gacaatgaag aagaaagttt gctggcagat
      421 gttgcttcct taagacatga actgaagata acagaatgga gtttgcagag attaggggaa
      481 gagttatcta gatgtctttt tcatcttcta cccctgtgga tcaggaaatc aaaagtcttc
      541 gagagaaact taataaactt aggcaacaga atgcttgttt ggtctcacag aatcattctt
      601 taatgactaa aatagagtct gtccactttg aattgacaca gtcaagaaca aaagtttcta
      661 tgcttgaatc tgctcaacaa caggcagcca ttgtaccaat cttagaagaa cagattataa
      721 atttggaagc agaagtttca gcccaagata aagttttgag agaggcagaa gataaattac
      781 agcagagtca gaaaatggtg actgaaaagg aacagagttt gcagaagtcc caagaggaat
      841 gtataaagct gaaggtagac ttatttgaac aaagtaaaca aggaaagaga gctgaacaac
      901 aaaggaatga agcactatat aatgctgaag agctaagtaa agctttccaa cattataaag
      961 aaaaggtggc tgaaaaactg gaaaaggttc aagctgaaga agcaatatta gagaaaaatc
     1021 taattaactg tgaaaaagaa aataaaaggc tacaggaaaa gtgtggtcta tataaaagtg
     1081 aacttgaaat tctgaaagag aaattaaggc agttaaaaga agaaaataat gatggaaaag
     1141 aaaaattaag gatcatggca gtgaaaaatt cagaagtcat ggcacaacta actgaatcta
     1201 gacaaagtat tcttaagcta gagagtgagt tagaggataa agacgaaata cttagagaaa
     1261 aattttctct gatgaatgaa aaccgagaat taaaagttca tattgcaaca cagaatgaga
     1321 gactggattt gtgtcagcaa gaaatagaaa gttcaagggt ggaactgaga agtttggaaa
     1381 aaattatgtc ccagttgcca ttaaaaagag aaatgtttgg ttttaaatca tctctgtcta
     1441 agcaccagat gagtattttg tcaaacaagg aaggcagtta cattggctgc tgtgagacaa
     1501 ataaaatggt gatttcggaa ttgaggatta agcttgcaat gaaagaggca gaaattcaaa
     1561 agcttcaggc aaacctgact gctaatcaat tatctcacaa tcttattgct tctaatgaca
     1621 accaagaaag tggcaaatta aatagtttag aaacagaacc tgtaaaacta ggaggtaatc
     1681 aagtagaaag tataaaagat caaaatcaac atactgtgaa caagcaatat gaaagagaaa
     1741 ggcaaagact tgcttctgga atagaagaat tacgtgataa gttgatgcag atagaagctg
     1801 agaattctga tttgaaggtt aacatggccc acagaactag tcagtttcag ctgattcaag
     1861 aggagctgct agagaaagct tcaaactcta gcaaacttga aagtgaaatg acaaagaaat
     1921 gttctcaact tttaactcta gagaaacagc tagaagaaaa aattgttgct tattcctcta
     1981 ttgctgcaaa aaatgcggaa ctagaacagg aacttatgga aaagaatgaa aaggttagaa
     2041 gtctagaaac caatatcaat acagagcatg agaaaatttg tttagctttt gaaaaggcaa
     2101 agaaaattca tcttgaccag cataaagaaa tggaaaagca gattgaaaga cttgaatctc
     2161 aactagagaa aaaagaacaa caatttaaag aacaagaaaa gacaatatcc atgttgcagc
     2221 aagatataat atgtaaacaa catcaccttg aatcactaga cagactcttg acggaaagca
     2281 aaggggaaat ggaaaaggaa aatatgaaga aagatgaagc tttgaaaaca ttgcagaacc
     2341 aagtatctga agaaacaatc aaggtcagac aactagattc agcattggaa atttgtaagg
     2401 aagaacttgc tttgcatttg aaccaattgg aaggaaataa agaaaagttt gaaaaacagc
     2461 taaagaagaa atctgaagaa gtatattgtt tacagaaaga gctgaagatt aaaaatcaca
     2521 gtcttcaaga gactactgag caaaatgtta ttctgcagca tactcttcaa caacagcagc
     2581 aaatgttaca acaagagaca tttagaaatg gagagctaga agacattcaa actaaacttg
     2641 aaaaacaggt atcaaaactt gaacaagagc ttcagaaaca aagggaaagt tcagctgaaa
     2701 agttgagaaa aatggaggaa gaatgtgaag cagccacata tgaagcagat ttaaaaaagc
     2761 aaaaagttat tgaacttact ggtactgcca ggcaagtaaa acttgagatg gatcactaca
     2821 aagaagaact gtataaaatg gaaaaagaaa taaagcacct aaaacgagat ggagaaaata
     2881 aagcaatgca tctctctcag ttagacatga tattagaaca gacaaagaca gaactagata
     2941 agaaaacaaa cgctgtgaag gagttagaaa agttacagca ccacactgaa actgaactaa
     3001 cagaagcctt gcagaaacgg gaagtactag agactgaact acaaaatgct catggagaat
     3061 taaagaatac tttaagacaa ctccaggaat tgagagatgt tctacagaag gctcagttat
     3121 cattagagga aaaatacact actataacgg atctcacagc tgaacttagg gaatgcaaga
     3181 tggagattga agacaaaaag caagaactcc ttgaaatgga tcaggcactt aaggagagaa
     3241 attgggagct aaagcaaaga gcagctcaag ttacatattt ggatatgact attcgtgaga
     3301 acaggggaga aatggaacag aaaataatta aattagaggg tactctggag aaatcagaat
     3361 tggaacttaa agaaagcaac aaacagatag aaagtttgaa tgaaaaattg caaaatgcca
     3421 aagaacaact tcgagaaaaa gagtttataa cactacaaaa tgaacaggag ataagtcaac
     3481 tgaaaaaaga aactgaatgg acacaaggaa agatgaaaga aatggaaatt gttatgaaag
     3541 agcaggaaca gtacattgca actcagtaca aggaggccat agatttggag caagaattga
     3601 ggctatctca ggagcagatg cagaactctc atacagaatt ggtggaggct catcgtcaac
     3661 aagtccaagc acagagagaa gtagaaaggc tgtcaagtga actggaggaa ataaagcaac
     3721 tctctaaaga gaaagaagct catggaaaac atttagctga agagttgggg gcttctcaag
     3781 tacgtgaagc tcagttagaa gcaagaatgc aagcagaaat caagaaattg tcagcagaag
     3841 tagaatctgt caaagaagct tatcatctag agatgatttc acatcaggag aagcatgcaa
     3901 agtggaagat tactgctgat tctcaaaaga cttctgttca gcaactaaat gaacagttag
     3961 agaaaacaaa actagaatta gaagaagctc aggacactat aagcaatttg catcagcaag
     4021 tccaaaacag gaataaagta attgaagcta caaacgaagc attacttatt aaagaatcag
     4081 aattaaccag attgcaagcc aaaatttctg gacatgaaag ggcagaagac atcaagtttc
     4141 taccagcccc gtttacatct ccagtagaaa ttgcgcctga tattcaagat tcaaaatttg
     4201 ctaagcattc tcacacagct ttcttcaagt gtagaaaact acgtcgctct attagtgcca
     4261 atgaccttag tttcagaact cgtagtgatg aagatctttc tgaagaatta ctgcaggact
     4321 taaaaaaaat gcaattggaa caaccttcaa cattagaaga aagccagaag gatctgactt
     4381 atacccagtc agagtcattt aaacctctcc catatgacct agaagatgat agttctgaga
     4441 ataatgactt cagtacactt agtggaatgc taagatatat aaacaaagaa gtgagactat
     4501 taaaaaagtc ttctatgcaa acaggtgctg gttcaactca gggagaaaat ttgtaattaa
     4561 aagaagacgt tgatgtgatg aaaaatggaa tttttggtac tgtgctgtgt ttacttatta
     4621 tatacagttc atacttcata gaaactgtta ttttattgct tttgaataaa ttttaaggtt
     4681 ttta
//
LOCUS       XM_032602766            4481 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 18
            (CCDC18), transcript variant X8, mRNA.
ACCESSION   XM_032602766
VERSION     XM_032602766.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4481
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4481
                     /gene="CCDC18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116738846"
     CDS             289..4353
                     /gene="CCDC18"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 18 isoform
                     X6"
                     /protein_id="XP_032458657.1"
                     /db_xref="GeneID:116738846"
                     /translation="MSFSSSTPVDQEIKSLREKLNKLRQQNACLVSQNHSLMTKIESV
                     HFELTQSRTKVSMLESAQQQAAIVPILEEQIINLEAEVSAQDKVLREAEDKLQQSQKM
                     VTEKEQSLQKSQEECIKLKVDLFEQSKQGKRAEQQRNEALYNAEELSKAFQHYKEKVA
                     EKLEKVQAEEAILEKNLINCEKENKRLQEKCGLYKSELEILKEKLRQLKEENNDGKEK
                     LRIMAVKNSEVMAQLTESRQSILKLESELEDKDEILREKFSLMNENRELKVHIATQNE
                     RLDLCQQEIESSRVELRSLEKIMSQLPLKREMFGFKSSLSKHQMSILSNKEGSYIGCC
                     ETNKMVISELRIKLAMKEAEIQKLQANLTANQLSHNLIASNDNQESGKLNSLETEPVK
                     LGGNQVESIKDQNQHTVNKQYERERQRLASGIEELRDKLMQIEAENSDLKVNMAHRTS
                     QFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQEL
                     MEKNEKVRSLETNINTEHEKICLAFEKAKKIHLDQHKEMEKQIERLESQLEKKEQQFK
                     EQEKTISMLQQDIICKQHHLESLDRLLTESKGEMEKENMKKDEALKTLQNQVSEETIK
                     VRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETT
                     EQNVILQHTLQQQQQMLQQETFRNGELEDIQTKLEKQVSKLEQELQKQRESSAEKLRK
                     MEEECEAATYEADLKKQKVIELTGTARQVKLEMDHYKEELYKMEKEIKHLKRDGENKA
                     MHLSQLDMILEQTKTELDKKTNAVKELEKLQHHTETELTEALQKREVLETELQNAHGE
                     LKNTLRQLQELRDVLQKAQLSLEEKYTTITDLTAELRECKMEIEDKKQELLEMDQALK
                     ERNWELKQRAAQVTYLDMTIRENRGEMEQKIIKLEGTLEKSELELKESNKQIESLNEK
                     LQNAKEQLREKEFITLQNEQEISQLKKETEWTQGKMKEMEIVMKEQEQYIATQYKEAI
                     DLEQELRLSQEQMQNSHTELVEAHRQQVQAQREVERLSSELEEIKQLSKEKEAHGKHL
                     AEELGASQVREAQLEARMQAEIKKLSAEVESVKEAYHLEMISHQEKHAKWKITADSQK
                     TSVQQLNEQLEKTKLELEEAQDTISNLHQQVQNRNKVIEATNEALLIKESELTRLQAK
                     ISGHERAEDIKFLPAPFTSPVEIAPDIQDSKFAKHSHTAFFKCRKLRRSISANDLSFR
                     TRSDEDLSEELLQDLKKMQLEQPSTLEESQKDLTYTQSESFKPLPYDLEDDSSENNDF
                     STLSGMLRYINKEVRLLKKSSMQTGAGSTQGENL"
     misc_feature    <313..>2085
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1222..3564
                     /gene="CCDC18"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <3235..>3981
                     /gene="CCDC18"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; Region: GumC;
                     COG3206"
                     /db_xref="CDD:442439"
ORIGIN      
        1 gcgtccccaa cggctcctgc ggcggtttga cctcgggcca gctggggttc gctagtttcc
       61 tgcgtggtgt gtctggggtt ccacgcttgg ggtccggcag agggtccgaa gtttccgaac
      121 gcagcggaga tcgcggcgtg cgccgtcgtc ggaaatggag tctagttcct cagactacta
      181 taataaagac aatgaagaag aaagtttgct ggcagatgtt gcttccttaa gacatgaact
      241 gaagataaca gaatggagtt tgcagagatt aggggaagag ttatctagat gtctttttca
      301 tcttctaccc ctgtggatca ggaaatcaaa agtcttcgag agaaacttaa taaacttagg
      361 caacagaatg cttgtttggt ctcacagaat cattctttaa tgactaaaat agagtctgtc
      421 cactttgaat tgacacagtc aagaacaaaa gtttctatgc ttgaatctgc tcaacaacag
      481 gcagccattg taccaatctt agaagaacag attataaatt tggaagcaga agtttcagcc
      541 caagataaag ttttgagaga ggcagaagat aaattacagc agagtcagaa aatggtgact
      601 gaaaaggaac agagtttgca gaagtcccaa gaggaatgta taaagctgaa ggtagactta
      661 tttgaacaaa gtaaacaagg aaagagagct gaacaacaaa ggaatgaagc actatataat
      721 gctgaagagc taagtaaagc tttccaacat tataaagaaa aggtggctga aaaactggaa
      781 aaggttcaag ctgaagaagc aatattagag aaaaatctaa ttaactgtga aaaagaaaat
      841 aaaaggctac aggaaaagtg tggtctatat aaaagtgaac ttgaaattct gaaagagaaa
      901 ttaaggcagt taaaagaaga aaataatgat ggaaaagaaa aattaaggat catggcagtg
      961 aaaaattcag aagtcatggc acaactaact gaatctagac aaagtattct taagctagag
     1021 agtgagttag aggataaaga cgaaatactt agagaaaaat tttctctgat gaatgaaaac
     1081 cgagaattaa aagttcatat tgcaacacag aatgagagac tggatttgtg tcagcaagaa
     1141 atagaaagtt caagggtgga actgagaagt ttggaaaaaa ttatgtccca gttgccatta
     1201 aaaagagaaa tgtttggttt taaatcatct ctgtctaagc accagatgag tattttgtca
     1261 aacaaggaag gcagttacat tggctgctgt gagacaaata aaatggtgat ttcggaattg
     1321 aggattaagc ttgcaatgaa agaggcagaa attcaaaagc ttcaggcaaa cctgactgct
     1381 aatcaattat ctcacaatct tattgcttct aatgacaacc aagaaagtgg caaattaaat
     1441 agtttagaaa cagaacctgt aaaactagga ggtaatcaag tagaaagtat aaaagatcaa
     1501 aatcaacata ctgtgaacaa gcaatatgaa agagaaaggc aaagacttgc ttctggaata
     1561 gaagaattac gtgataagtt gatgcagata gaagctgaga attctgattt gaaggttaac
     1621 atggcccaca gaactagtca gtttcagctg attcaagagg agctgctaga gaaagcttca
     1681 aactctagca aacttgaaag tgaaatgaca aagaaatgtt ctcaactttt aactctagag
     1741 aaacagctag aagaaaaaat tgttgcttat tcctctattg ctgcaaaaaa tgcggaacta
     1801 gaacaggaac ttatggaaaa gaatgaaaag gttagaagtc tagaaaccaa tatcaataca
     1861 gagcatgaga aaatttgttt agcttttgaa aaggcaaaga aaattcatct tgaccagcat
     1921 aaagaaatgg aaaagcagat tgaaagactt gaatctcaac tagagaaaaa agaacaacaa
     1981 tttaaagaac aagaaaagac aatatccatg ttgcagcaag atataatatg taaacaacat
     2041 caccttgaat cactagacag actcttgacg gaaagcaaag gggaaatgga aaaggaaaat
     2101 atgaagaaag atgaagcttt gaaaacattg cagaaccaag tatctgaaga aacaatcaag
     2161 gtcagacaac tagattcagc attggaaatt tgtaaggaag aacttgcttt gcatttgaac
     2221 caattggaag gaaataaaga aaagtttgaa aaacagctaa agaagaaatc tgaagaagta
     2281 tattgtttac agaaagagct gaagattaaa aatcacagtc ttcaagagac tactgagcaa
     2341 aatgttattc tgcagcatac tcttcaacaa cagcagcaaa tgttacaaca agagacattt
     2401 agaaatggag agctagaaga cattcaaact aaacttgaaa aacaggtatc aaaacttgaa
     2461 caagagcttc agaaacaaag ggaaagttca gctgaaaagt tgagaaaaat ggaggaagaa
     2521 tgtgaagcag ccacatatga agcagattta aaaaagcaaa aagttattga acttactggt
     2581 actgccaggc aagtaaaact tgagatggat cactacaaag aagaactgta taaaatggaa
     2641 aaagaaataa agcacctaaa acgagatgga gaaaataaag caatgcatct ctctcagtta
     2701 gacatgatat tagaacagac aaagacagaa ctagataaga aaacaaacgc tgtgaaggag
     2761 ttagaaaagt tacagcacca cactgaaact gaactaacag aagccttgca gaaacgggaa
     2821 gtactagaga ctgaactaca aaatgctcat ggagaattaa agaatacttt aagacaactc
     2881 caggaattga gagatgttct acagaaggct cagttatcat tagaggaaaa atacactact
     2941 ataacggatc tcacagctga acttagggaa tgcaagatgg agattgaaga caaaaagcaa
     3001 gaactccttg aaatggatca ggcacttaag gagagaaatt gggagctaaa gcaaagagca
     3061 gctcaagtta catatttgga tatgactatt cgtgagaaca ggggagaaat ggaacagaaa
     3121 ataattaaat tagagggtac tctggagaaa tcagaattgg aacttaaaga aagcaacaaa
     3181 cagatagaaa gtttgaatga aaaattgcaa aatgccaaag aacaacttcg agaaaaagag
     3241 tttataacac tacaaaatga acaggagata agtcaactga aaaaagaaac tgaatggaca
     3301 caaggaaaga tgaaagaaat ggaaattgtt atgaaagagc aggaacagta cattgcaact
     3361 cagtacaagg aggccataga tttggagcaa gaattgaggc tatctcagga gcagatgcag
     3421 aactctcata cagaattggt ggaggctcat cgtcaacaag tccaagcaca gagagaagta
     3481 gaaaggctgt caagtgaact ggaggaaata aagcaactct ctaaagagaa agaagctcat
     3541 ggaaaacatt tagctgaaga gttgggggct tctcaagtac gtgaagctca gttagaagca
     3601 agaatgcaag cagaaatcaa gaaattgtca gcagaagtag aatctgtcaa agaagcttat
     3661 catctagaga tgatttcaca tcaggagaag catgcaaagt ggaagattac tgctgattct
     3721 caaaagactt ctgttcagca actaaatgaa cagttagaga aaacaaaact agaattagaa
     3781 gaagctcagg acactataag caatttgcat cagcaagtcc aaaacaggaa taaagtaatt
     3841 gaagctacaa acgaagcatt acttattaaa gaatcagaat taaccagatt gcaagccaaa
     3901 atttctggac atgaaagggc agaagacatc aagtttctac cagccccgtt tacatctcca
     3961 gtagaaattg cgcctgatat tcaagattca aaatttgcta agcattctca cacagctttc
     4021 ttcaagtgta gaaaactacg tcgctctatt agtgccaatg accttagttt cagaactcgt
     4081 agtgatgaag atctttctga agaattactg caggacttaa aaaaaatgca attggaacaa
     4141 ccttcaacat tagaagaaag ccagaaggat ctgacttata cccagtcaga gtcatttaaa
     4201 cctctcccat atgacctaga agatgatagt tctgagaata atgacttcag tacacttagt
     4261 ggaatgctaa gatatataaa caaagaagtg agactattaa aaaagtcttc tatgcaaaca
     4321 ggtgctggtt caactcaggg agaaaatttg taattaaaag aagacgttga tgtgatgaaa
     4381 aatggaattt ttggtactgt gctgtgttta cttattatat acagttcata cttcatagaa
     4441 actgttattt tattgctttt gaataaattt taaggttttt a
//
LOCUS       XM_032602787             198 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytochrome c oxidase subunit 6C-like
            (LOC116738889), mRNA.
ACCESSION   XM_032602787
VERSION     XM_032602787.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..198
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..198
                     /gene="LOC116738889"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins"
                     /db_xref="GeneID:116738889"
     CDS             1..198
                     /gene="LOC116738889"
                     /codon_start=1
                     /product="cytochrome c oxidase subunit 6C-like"
                     /protein_id="XP_032458678.1"
                     /db_xref="GeneID:116738889"
                     /translation="MAPDSLTKPQMCSLLAKRLRFHIVGALTVSLGVATFCKFAVAEP
                     RKKAYADFYRNYDSIKHFEEM"
     misc_feature    16..195
                     /gene="LOC116738889"
                     /note="Cytochrome c oxidase subunit VIc; Region: COX6C;
                     pfam02937"
                     /db_xref="CDD:460756"
ORIGIN      
        1 atggccccag attctttgac gaaacctcag atgtgtagcc ttctggccaa gcgcctgcga
       61 tttcatattg ttggagcgct cactgtctcc ctaggagttg caactttctg taagtttgct
      121 gtggctgaac caagaaagaa ggcatatgca gatttctata gaaattatga ttccataaaa
      181 cattttgaag agatgtga
//
LOCUS       XM_032602797            3714 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase Na+/K+ transporting subunit alpha
            1 (ATP1A1), transcript variant X1, mRNA.
ACCESSION   XM_032602797
VERSION     XM_032602797.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3714
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3714
                     /gene="ATP1A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 mRNAs, 46 long SRA reads, 156
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738896"
     CDS             316..3381
                     /gene="ATP1A1"
                     /codon_start=1
                     /product="sodium/potassium-transporting ATPase subunit
                     alpha-1 isoform X1"
                     /protein_id="XP_032458688.1"
                     /db_xref="GeneID:116738896"
                     /translation="MGKGVGRDKYEPAAVSEHGDKKKAKKERDMDELKKEVSMDDHKL
                     SLDELHRKYGTDLSRGLTTARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLL
                     WIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFK
                     NMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTG
                     ESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLE
                     GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGL
                     LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFD
                     NQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDAS
                     ESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGA
                     PERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDDQFPEG
                     FQFDTDDVNFPVDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA
                     IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTAEQLDDILKY
                     HTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVS
                     KQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPL
                     PLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPQTDKLVNERLISMAYGQIG
                     MIQALGGFFTYFVIMAENGFLPTHLLGVRVDWDDRWINDVEDSYGQQWTYEQRKIVEF
                     TCHTAFFVSIVVVQWADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGM
                     GVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWVEKETYY"
     misc_feature    388..3378
                     /gene="ATP1A1"
                     /note="sodium or proton efflux -- potassium uptake
                     antiporter, P-type ATPase, alpha subunit; Region:
                     ATPase-IIC_X-K; TIGR01106"
                     /db_xref="CDD:273445"
ORIGIN      
        1 ggctaacacg caggttgcat attttaggaa gtgaggagga ggcgcgggct tgagctgcgg
       61 ctgggtctgg ggcgcagagc tgcggcggga ggaggcggac acgtggcagc agcagcggta
      121 gcagccccgg cagcggcggc agaaaaggca tcggcccgag ccgccggccg tcttccctcc
      181 ttcccgcccc gcggcagccc tagctccctt ctctccgctc ccccggtcgc gcttgctcgg
      241 ccgggagccg ctctcttcgt ttctttctga ttttcaagca acaggacccg gcgcggggca
      301 cagaccaccg ccagtatggg gaagggggtt ggacgtgata aatatgaacc cgcagctgtt
      361 tcagagcatg gcgacaaaaa gaaggccaag aaagagaggg atatggatga gctgaagaag
      421 gaagtttcta tggatgacca caaacttagc cttgatgagc ttcatcgcaa atacggaacg
      481 gacttgagcc gaggcttaac aactgcccga gctgctgaga tcctggcccg agacggtccc
      541 aacgccctca ctccccctcc cacgaccccc gaatgggtca agttctgtcg gcagctgttc
      601 ggggggttct caatgttact gtggattgga gcaattcttt gtttcttggc ctatggcatc
      661 caagctgcta cagaagagga acctcaaaat gataatctgt atcttggagt ggtgctgtct
      721 gccgtcgtca tcataactgg gtgtttctcc tactatcaag aagctaaaag ctcaaagatc
      781 atggagtcct tcaaaaacat ggttcctcag caagccctcg tgattcgaaa tggtgaaaaa
      841 atgagcataa atgcagaaga agttgtcgtt ggggatctgg tggaagtgaa aggaggggat
      901 cgaatccctg ctgatctcag aatcatctct gcaaacggct gcaaggtgga taactcctca
      961 ctcactggag aatcagaacc gcagaccagg tctccggatt tcaccaatga aaaccccctg
     1021 gagacacgga acattgcctt tttttcaacc aactgcgttg aaggtactgc acgtggcatt
     1081 gtcgtgtaca cgggggatcg caccgtgatg ggcagaatcg ccacgctcgc ttctgggctg
     1141 gaagggggcc agactcccat tgctgcggaa attgaacatt ttatccacat catcacgggt
     1201 gtggccgtgt tcctgggcgt gtcgttcttc atcctttctc tgatccttga atacacctgg
     1261 cttgaggccg tcatcttcct catcggcatc attgtagcca acgtgccaga aggtttgctg
     1321 gccaccgtca cggtgtgcct gaccctgacc gccaagcgca tggccaggaa gaactgctta
     1381 gtgaagaacc tggaggctgt ggagaccttg gggtccacgt ccaccatctg ctcagacaaa
     1441 actggaactc tgacccagaa ccggatgacg gtggcccaca tgtggttcga caatcagatc
     1501 cacgaggccg acacgacgga gaatcagagt ggtgtctcat tcgacaagac ctcggccacc
     1561 tggctcgctc tgtccagaat tgcagggctt tgtaacaggg ccgtgtttca ggctaaccag
     1621 gagaacctgc ctatcctgaa gcgggccgtt gcaggcgatg cgtccgagtc cgcgctcctg
     1681 aagtgcattg agctgtgctg cggttctgtg aaggagatga gagagagata cacgaagatc
     1741 gttgagatac ccttcaactc caccaacaag taccagttgt ccatccacaa gaaccccaac
     1801 acggctgagc cccggcacct gctggtgatg aaaggtgccc cggaaaggat cctggaccgc
     1861 tgcagctcca tcctcatcca cggcaaggag cagcccctgg acgaggagct gaaggacgcc
     1921 tttcagaacg cctacctgga gctgggtggt cttggagagc gcgtgctggg tttctgccac
     1981 cttttcctgc cagatgacca gtttcccgaa ggcttccagt ttgacaccga tgatgtgaat
     2041 ttccctgttg ataatctctg cttcgtgggg ctcatctcca tgatcgaccc accacgggct
     2101 gccgtccctg atgccgtggg caaatgtcga agtgctggaa ttaaggtcat catggtcacc
     2161 ggagaccatc caatcacagc caaagccatt gccaaaggtg tgggcatcat ctcggaagga
     2221 aacgagaccg tagaagacat cgctgcccgc ctcaacattc cagtgagcca ggtgaacccc
     2281 agggatgcca aggcctgcgt ggtacatgga agtgatctga aggacatgac tgccgagcag
     2341 ctggatgaca ttctgaagta ccacacggag atcgtgtttg ccaggacctc tccgcagcag
     2401 aagctcatca ttgtggaagg ctgccagaga cagggcgcca ttgtggctgt aactggcgac
     2461 ggtgtcaatg actctccggc tttgaagaag gctgacatcg gggttgccat ggggatagct
     2521 ggctcagacg tgtctaagca agctgccgac atgatcctcc tggatgacaa ctttgcctca
     2581 attgtgactg gagtagagga aggtcgtctg atttttgata acttgaagaa atccattgcc
     2641 tacaccctca ccagtaacat tccagagatc acccccttcc tgatatttat tattgccaac
     2701 attccactac ccctggggac tgtcaccatc ctctgcatcg acttgggaac agacatggtt
     2761 cctgccatct ccctggctta cgagcaggct gagagcgaca tcatgaagag acagcccaga
     2821 aacccccaaa cggacaaact cgtgaacgag cggttgatca gcatggccta cggacagatt
     2881 ggtatgatcc aggccctggg gggcttcttc acctactttg tgattatggc tgagaacggc
     2941 ttcctcccga ctcacctgct gggcgtccga gtagactggg atgaccgctg gatcaacgac
     3001 gtggaggata gctacgggca gcagtggacc tacgaacaga ggaagatcgt ggagttcacc
     3061 tgccacacag ccttctttgt cagcatcgtg gtggtgcagt gggccgactt ggtcatctgc
     3121 aagaccagga ggaattctgt cttccagcag gggatgaaga acaagatctt aatatttggc
     3181 ctcttcgaag agacggccct tgctgctttc ctttcctact gccctggaat gggtgttgcc
     3241 ctgaggatgt atcccctcaa acctacctgg tggttctgtg ccttccccta ctctcttctc
     3301 atcttcgtgt atgacgaagt ccgaaagctc atcatcaggc gacgccctgg cggctgggta
     3361 gagaaggaga cctactacta gaccccctcc tgcacgccgg agagcatcac gccacacact
     3421 ctgcacccac cacccacccc ctctttgtgt acttcagtct cggaattcgg aattctaccc
     3481 tggtaggaaa gcaccgaagc atgtggggaa gaagcgagat gtcccggaat gaagcatgta
     3541 gctatatggg gggggagggg ggagggctgc ccgagaaaca tccgtctgtg ggaacaacat
     3601 cggggaaggt ttttatgtgc cttgttgttt ttgtaaaaag gaaaactcgg aaagactgaa
     3661 agaatacatt ttatatctgg atttttacaa ataaagatgg ctattataat ggaa
//
LOCUS       XM_032602807            3676 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase Na+/K+ transporting subunit alpha
            1 (ATP1A1), transcript variant X2, mRNA.
ACCESSION   XM_032602807
VERSION     XM_032602807.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3676
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3676
                     /gene="ATP1A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 45
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738896"
     CDS             274..3276
                     /gene="ATP1A1"
                     /codon_start=1
                     /product="sodium/potassium-transporting ATPase subunit
                     alpha-1 isoform X2"
                     /protein_id="XP_032458698.1"
                     /db_xref="GeneID:116738896"
                     /translation="MGKGVGRDKYEPAAVSEHGDKKKAKKERDMDELKKEVSMDDHKL
                     SLDELHRKYGTDLSRGLTTARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLL
                     WIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFK
                     NMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTG
                     ESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLE
                     GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGL
                     LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFD
                     NQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDAS
                     ESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGA
                     PERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDDQFPEG
                     FQFDTDDVNFPVDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA
                     IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTAEQLDDILKY
                     HTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVS
                     KQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPL
                     PLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPQTDKLVNERLISMAYGQIG
                     MIQALGGFFTYFVIMAENGFLPTHLLGVRVDWDDRWINDVEDSYGQQWVNLRTEEDRG
                     VHLPHSLLCQHRGGAVGRLGHLQDQEEFCLPAGDEEQDLNIWPLRRDGPCCFPFLLPW
                     NGCCPEDVSPQTYLVVLCLPLLSSHLRV"
     misc_feature    346..3012
                     /gene="ATP1A1"
                     /note="sodium or proton efflux -- potassium uptake
                     antiporter, P-type ATPase, alpha subunit; Region:
                     ATPase-IIC_X-K; TIGR01106"
                     /db_xref="CDD:273445"
ORIGIN      
        1 cgcgggcttg agctgcggct gggtctgggg cgcagagctg cggcgggagg aggcggacac
       61 gtggcagcag cagcggtagc agccccggca gcggcggcag aaaaggcatc ggcccgagcc
      121 gccggccgtc ttccctcctt cccgccccgc ggcagcccta gctcccttct ctccgctccc
      181 ccggtcgcgc ttgctcggcc gggagccgct ctcttcgttt ctttctgatt ttcaagcaac
      241 aggacccggc gcggggcaca gaccaccgcc agtatgggga agggggttgg acgtgataaa
      301 tatgaacccg cagctgtttc agagcatggc gacaaaaaga aggccaagaa agagagggat
      361 atggatgagc tgaagaagga agtttctatg gatgaccaca aacttagcct tgatgagctt
      421 catcgcaaat acggaacgga cttgagccga ggcttaacaa ctgcccgagc tgctgagatc
      481 ctggcccgag acggtcccaa cgccctcact ccccctccca cgacccccga atgggtcaag
      541 ttctgtcggc agctgttcgg ggggttctca atgttactgt ggattggagc aattctttgt
      601 ttcttggcct atggcatcca agctgctaca gaagaggaac ctcaaaatga taatctgtat
      661 cttggagtgg tgctgtctgc cgtcgtcatc ataactgggt gtttctccta ctatcaagaa
      721 gctaaaagct caaagatcat ggagtccttc aaaaacatgg ttcctcagca agccctcgtg
      781 attcgaaatg gtgaaaaaat gagcataaat gcagaagaag ttgtcgttgg ggatctggtg
      841 gaagtgaaag gaggggatcg aatccctgct gatctcagaa tcatctctgc aaacggctgc
      901 aaggtggata actcctcact cactggagaa tcagaaccgc agaccaggtc tccggatttc
      961 accaatgaaa accccctgga gacacggaac attgcctttt tttcaaccaa ctgcgttgaa
     1021 ggtactgcac gtggcattgt cgtgtacacg ggggatcgca ccgtgatggg cagaatcgcc
     1081 acgctcgctt ctgggctgga agggggccag actcccattg ctgcggaaat tgaacatttt
     1141 atccacatca tcacgggtgt ggccgtgttc ctgggcgtgt cgttcttcat cctttctctg
     1201 atccttgaat acacctggct tgaggccgtc atcttcctca tcggcatcat tgtagccaac
     1261 gtgccagaag gtttgctggc caccgtcacg gtgtgcctga ccctgaccgc caagcgcatg
     1321 gccaggaaga actgcttagt gaagaacctg gaggctgtgg agaccttggg gtccacgtcc
     1381 accatctgct cagacaaaac tggaactctg acccagaacc ggatgacggt ggcccacatg
     1441 tggttcgaca atcagatcca cgaggccgac acgacggaga atcagagtgg tgtctcattc
     1501 gacaagacct cggccacctg gctcgctctg tccagaattg cagggctttg taacagggcc
     1561 gtgtttcagg ctaaccagga gaacctgcct atcctgaagc gggccgttgc aggcgatgcg
     1621 tccgagtccg cgctcctgaa gtgcattgag ctgtgctgcg gttctgtgaa ggagatgaga
     1681 gagagataca cgaagatcgt tgagataccc ttcaactcca ccaacaagta ccagttgtcc
     1741 atccacaaga accccaacac ggctgagccc cggcacctgc tggtgatgaa aggtgccccg
     1801 gaaaggatcc tggaccgctg cagctccatc ctcatccacg gcaaggagca gcccctggac
     1861 gaggagctga aggacgcctt tcagaacgcc tacctggagc tgggtggtct tggagagcgc
     1921 gtgctgggtt tctgccacct tttcctgcca gatgaccagt ttcccgaagg cttccagttt
     1981 gacaccgatg atgtgaattt ccctgttgat aatctctgct tcgtggggct catctccatg
     2041 atcgacccac cacgggctgc cgtccctgat gccgtgggca aatgtcgaag tgctggaatt
     2101 aaggtcatca tggtcaccgg agaccatcca atcacagcca aagccattgc caaaggtgtg
     2161 ggcatcatct cggaaggaaa cgagaccgta gaagacatcg ctgcccgcct caacattcca
     2221 gtgagccagg tgaaccccag ggatgccaag gcctgcgtgg tacatggaag tgatctgaag
     2281 gacatgactg ccgagcagct ggatgacatt ctgaagtacc acacggagat cgtgtttgcc
     2341 aggacctctc cgcagcagaa gctcatcatt gtggaaggct gccagagaca gggcgccatt
     2401 gtggctgtaa ctggcgacgg tgtcaatgac tctccggctt tgaagaaggc tgacatcggg
     2461 gttgccatgg ggatagctgg ctcagacgtg tctaagcaag ctgccgacat gatcctcctg
     2521 gatgacaact ttgcctcaat tgtgactgga gtagaggaag gtcgtctgat ttttgataac
     2581 ttgaagaaat ccattgccta caccctcacc agtaacattc cagagatcac ccccttcctg
     2641 atatttatta ttgccaacat tccactaccc ctggggactg tcaccatcct ctgcatcgac
     2701 ttgggaacag acatggttcc tgccatctcc ctggcttacg agcaggctga gagcgacatc
     2761 atgaagagac agcccagaaa cccccaaacg gacaaactcg tgaacgagcg gttgatcagc
     2821 atggcctacg gacagattgg tatgatccag gccctggggg gcttcttcac ctactttgtg
     2881 attatggctg agaacggctt cctcccgact cacctgctgg gcgtccgagt agactgggat
     2941 gaccgctgga tcaacgacgt ggaggatagc tacgggcagc agtgggtgaa cctacgaaca
     3001 gaggaagatc gtggagttca cctgccacac agccttcttt gtcagcatcg tggtggtgca
     3061 gtgggccgac ttggtcatct gcaagaccag gaggaattct gtcttccagc aggggatgaa
     3121 gaacaagatc ttaatatttg gcctcttcga agagacggcc cttgctgctt tcctttccta
     3181 ctgccctgga atgggtgttg ccctgaggat gtatcccctc aaacctacct ggtggttctg
     3241 tgccttcccc tactctcttc tcatcttcgt gtatgacgaa gtccgaaagc tcatcatcag
     3301 gcgacgccct ggcggctggg tagagaagga gacctactac tagaccccct cctgcacgcc
     3361 ggagagcatc acgccacaca ctctgcaccc accacccacc ccctctttgt gtacttcagt
     3421 ctcggaattc ggaattctac cctggtagga aagcaccgaa gcatgtgggg aagaagcgag
     3481 atgtcccgga atgaagcatg tagctatatg gggggggagg ggggagggct gcccgagaaa
     3541 catccgtctg tgggaacaac atcggggaag gtttttatgt gccttgttgt ttttgtaaaa
     3601 aggaaaactc ggaaagactg aaagaataca ttttatatct ggatttttac aaataaagat
     3661 ggctattata atggaa
//
LOCUS       XM_032602815            3440 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase Na+/K+ transporting subunit alpha
            1 (ATP1A1), transcript variant X3, mRNA.
ACCESSION   XM_032602815
VERSION     XM_032602815.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3440
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3440
                     /gene="ATP1A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 33 long SRA reads, 156
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738896"
     CDS             129..3107
                     /gene="ATP1A1"
                     /codon_start=1
                     /product="sodium/potassium-transporting ATPase subunit
                     alpha-1 isoform X3"
                     /protein_id="XP_032458706.1"
                     /db_xref="GeneID:116738896"
                     /translation="MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTTARAAEILARD
                     GPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLG
                     VVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLV
                     EVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNC
                     VEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFF
                     ILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVE
                     TLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWLALSR
                     IAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIP
                     FNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQ
                     NAYLELGGLGERVLGFCHLFLPDDQFPEGFQFDTDDVNFPVDNLCFVGLISMIDPPRA
                     AVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQV
                     NPRDAKACVVHGSDLKDMTAEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVA
                     VTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDN
                     LKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAES
                     DIMKRQPRNPQTDKLVNERLISMAYGQIGMIQALGGFFTYFVIMAENGFLPTHLLGVR
                     VDWDDRWINDVEDSYGQQWTYEQRKIVEFTCHTAFFVSIVVVQWADLVICKTRRNSVF
                     QQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWWFCAFPYSLLIFVYDE
                     VRKLIIRRRPGGWVEKETYY"
     misc_feature    129..3104
                     /gene="ATP1A1"
                     /note="sodium or proton efflux -- potassium uptake
                     antiporter, P-type ATPase, alpha subunit; Region:
                     ATPase-IIC_X-K; TIGR01106"
                     /db_xref="CDD:273445"
ORIGIN      
        1 gcgggaggcg gaggaggagg aagcggcggg gcgcggaatg ggttggcaga gcggttggac
       61 gtgataaata tgaacccgca gctgtttcag agcatggcga caaaaagaag gccaagaaag
      121 agagggatat ggatgagctg aagaaggaag tttctatgga tgaccacaaa cttagccttg
      181 atgagcttca tcgcaaatac ggaacggact tgagccgagg cttaacaact gcccgagctg
      241 ctgagatcct ggcccgagac ggtcccaacg ccctcactcc ccctcccacg acccccgaat
      301 gggtcaagtt ctgtcggcag ctgttcgggg ggttctcaat gttactgtgg attggagcaa
      361 ttctttgttt cttggcctat ggcatccaag ctgctacaga agaggaacct caaaatgata
      421 atctgtatct tggagtggtg ctgtctgccg tcgtcatcat aactgggtgt ttctcctact
      481 atcaagaagc taaaagctca aagatcatgg agtccttcaa aaacatggtt cctcagcaag
      541 ccctcgtgat tcgaaatggt gaaaaaatga gcataaatgc agaagaagtt gtcgttgggg
      601 atctggtgga agtgaaagga ggggatcgaa tccctgctga tctcagaatc atctctgcaa
      661 acggctgcaa ggtggataac tcctcactca ctggagaatc agaaccgcag accaggtctc
      721 cggatttcac caatgaaaac cccctggaga cacggaacat tgcctttttt tcaaccaact
      781 gcgttgaagg tactgcacgt ggcattgtcg tgtacacggg ggatcgcacc gtgatgggca
      841 gaatcgccac gctcgcttct gggctggaag ggggccagac tcccattgct gcggaaattg
      901 aacattttat ccacatcatc acgggtgtgg ccgtgttcct gggcgtgtcg ttcttcatcc
      961 tttctctgat ccttgaatac acctggcttg aggccgtcat cttcctcatc ggcatcattg
     1021 tagccaacgt gccagaaggt ttgctggcca ccgtcacggt gtgcctgacc ctgaccgcca
     1081 agcgcatggc caggaagaac tgcttagtga agaacctgga ggctgtggag accttggggt
     1141 ccacgtccac catctgctca gacaaaactg gaactctgac ccagaaccgg atgacggtgg
     1201 cccacatgtg gttcgacaat cagatccacg aggccgacac gacggagaat cagagtggtg
     1261 tctcattcga caagacctcg gccacctggc tcgctctgtc cagaattgca gggctttgta
     1321 acagggccgt gtttcaggct aaccaggaga acctgcctat cctgaagcgg gccgttgcag
     1381 gcgatgcgtc cgagtccgcg ctcctgaagt gcattgagct gtgctgcggt tctgtgaagg
     1441 agatgagaga gagatacacg aagatcgttg agataccctt caactccacc aacaagtacc
     1501 agttgtccat ccacaagaac cccaacacgg ctgagccccg gcacctgctg gtgatgaaag
     1561 gtgccccgga aaggatcctg gaccgctgca gctccatcct catccacggc aaggagcagc
     1621 ccctggacga ggagctgaag gacgcctttc agaacgccta cctggagctg ggtggtcttg
     1681 gagagcgcgt gctgggtttc tgccaccttt tcctgccaga tgaccagttt cccgaaggct
     1741 tccagtttga caccgatgat gtgaatttcc ctgttgataa tctctgcttc gtggggctca
     1801 tctccatgat cgacccacca cgggctgccg tccctgatgc cgtgggcaaa tgtcgaagtg
     1861 ctggaattaa ggtcatcatg gtcaccggag accatccaat cacagccaaa gccattgcca
     1921 aaggtgtggg catcatctcg gaaggaaacg agaccgtaga agacatcgct gcccgcctca
     1981 acattccagt gagccaggtg aaccccaggg atgccaaggc ctgcgtggta catggaagtg
     2041 atctgaagga catgactgcc gagcagctgg atgacattct gaagtaccac acggagatcg
     2101 tgtttgccag gacctctccg cagcagaagc tcatcattgt ggaaggctgc cagagacagg
     2161 gcgccattgt ggctgtaact ggcgacggtg tcaatgactc tccggctttg aagaaggctg
     2221 acatcggggt tgccatgggg atagctggct cagacgtgtc taagcaagct gccgacatga
     2281 tcctcctgga tgacaacttt gcctcaattg tgactggagt agaggaaggt cgtctgattt
     2341 ttgataactt gaagaaatcc attgcctaca ccctcaccag taacattcca gagatcaccc
     2401 ccttcctgat atttattatt gccaacattc cactacccct ggggactgtc accatcctct
     2461 gcatcgactt gggaacagac atggttcctg ccatctccct ggcttacgag caggctgaga
     2521 gcgacatcat gaagagacag cccagaaacc cccaaacgga caaactcgtg aacgagcggt
     2581 tgatcagcat ggcctacgga cagattggta tgatccaggc cctggggggc ttcttcacct
     2641 actttgtgat tatggctgag aacggcttcc tcccgactca cctgctgggc gtccgagtag
     2701 actgggatga ccgctggatc aacgacgtgg aggatagcta cgggcagcag tggacctacg
     2761 aacagaggaa gatcgtggag ttcacctgcc acacagcctt ctttgtcagc atcgtggtgg
     2821 tgcagtgggc cgacttggtc atctgcaaga ccaggaggaa ttctgtcttc cagcagggga
     2881 tgaagaacaa gatcttaata tttggcctct tcgaagagac ggcccttgct gctttccttt
     2941 cctactgccc tggaatgggt gttgccctga ggatgtatcc cctcaaacct acctggtggt
     3001 tctgtgcctt cccctactct cttctcatct tcgtgtatga cgaagtccga aagctcatca
     3061 tcaggcgacg ccctggcggc tgggtagaga aggagaccta ctactagacc ccctcctgca
     3121 cgccggagag catcacgcca cacactctgc acccaccacc caccccctct ttgtgtactt
     3181 cagtctcgga attcggaatt ctaccctggt aggaaagcac cgaagcatgt ggggaagaag
     3241 cgagatgtcc cggaatgaag catgtagcta tatggggggg gaggggggag ggctgcccga
     3301 gaaacatccg tctgtgggaa caacatcggg gaaggttttt atgtgccttg ttgtttttgt
     3361 aaaaaggaaa actcggaaag actgaaagaa tacattttat atctggattt ttacaaataa
     3421 agatggctat tataatggaa
//
LOCUS       XM_032602822            3506 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase Na+/K+ transporting subunit alpha
            1 (ATP1A1), transcript variant X4, mRNA.
ACCESSION   XM_032602822
VERSION     XM_032602822.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3506
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3506
                     /gene="ATP1A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 33 long SRA reads, 77
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116738896"
     CDS             195..3173
                     /gene="ATP1A1"
                     /codon_start=1
                     /product="sodium/potassium-transporting ATPase subunit
                     alpha-1 isoform X3"
                     /protein_id="XP_032458713.1"
                     /db_xref="GeneID:116738896"
                     /translation="MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTTARAAEILARD
                     GPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLG
                     VVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLV
                     EVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNC
                     VEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFF
                     ILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVE
                     TLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWLALSR
                     IAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIP
                     FNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQ
                     NAYLELGGLGERVLGFCHLFLPDDQFPEGFQFDTDDVNFPVDNLCFVGLISMIDPPRA
                     AVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQV
                     NPRDAKACVVHGSDLKDMTAEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVA
                     VTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDN
                     LKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAES
                     DIMKRQPRNPQTDKLVNERLISMAYGQIGMIQALGGFFTYFVIMAENGFLPTHLLGVR
                     VDWDDRWINDVEDSYGQQWTYEQRKIVEFTCHTAFFVSIVVVQWADLVICKTRRNSVF
                     QQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWWFCAFPYSLLIFVYDE
                     VRKLIIRRRPGGWVEKETYY"
     misc_feature    195..3170
                     /gene="ATP1A1"
                     /note="sodium or proton efflux -- potassium uptake
                     antiporter, P-type ATPase, alpha subunit; Region:
                     ATPase-IIC_X-K; TIGR01106"
                     /db_xref="CDD:273445"
ORIGIN      
        1 agccagcggg aggcggagga ggaggaagcg gcggggcgcg gaatgggttg gcagagcgtc
       61 tcgagtttcg aaatgctgtt ctgaattcac aaccacacgt ttcccacatc cctctgtagg
      121 ttggacgtga taaatatgaa cccgcagctg tttcagagca tggcgacaaa aagaaggcca
      181 agaaagagag ggatatggat gagctgaaga aggaagtttc tatggatgac cacaaactta
      241 gccttgatga gcttcatcgc aaatacggaa cggacttgag ccgaggctta acaactgccc
      301 gagctgctga gatcctggcc cgagacggtc ccaacgccct cactccccct cccacgaccc
      361 ccgaatgggt caagttctgt cggcagctgt tcggggggtt ctcaatgtta ctgtggattg
      421 gagcaattct ttgtttcttg gcctatggca tccaagctgc tacagaagag gaacctcaaa
      481 atgataatct gtatcttgga gtggtgctgt ctgccgtcgt catcataact gggtgtttct
      541 cctactatca agaagctaaa agctcaaaga tcatggagtc cttcaaaaac atggttcctc
      601 agcaagccct cgtgattcga aatggtgaaa aaatgagcat aaatgcagaa gaagttgtcg
      661 ttggggatct ggtggaagtg aaaggagggg atcgaatccc tgctgatctc agaatcatct
      721 ctgcaaacgg ctgcaaggtg gataactcct cactcactgg agaatcagaa ccgcagacca
      781 ggtctccgga tttcaccaat gaaaaccccc tggagacacg gaacattgcc tttttttcaa
      841 ccaactgcgt tgaaggtact gcacgtggca ttgtcgtgta cacgggggat cgcaccgtga
      901 tgggcagaat cgccacgctc gcttctgggc tggaaggggg ccagactccc attgctgcgg
      961 aaattgaaca ttttatccac atcatcacgg gtgtggccgt gttcctgggc gtgtcgttct
     1021 tcatcctttc tctgatcctt gaatacacct ggcttgaggc cgtcatcttc ctcatcggca
     1081 tcattgtagc caacgtgcca gaaggtttgc tggccaccgt cacggtgtgc ctgaccctga
     1141 ccgccaagcg catggccagg aagaactgct tagtgaagaa cctggaggct gtggagacct
     1201 tggggtccac gtccaccatc tgctcagaca aaactggaac tctgacccag aaccggatga
     1261 cggtggccca catgtggttc gacaatcaga tccacgaggc cgacacgacg gagaatcaga
     1321 gtggtgtctc attcgacaag acctcggcca cctggctcgc tctgtccaga attgcagggc
     1381 tttgtaacag ggccgtgttt caggctaacc aggagaacct gcctatcctg aagcgggccg
     1441 ttgcaggcga tgcgtccgag tccgcgctcc tgaagtgcat tgagctgtgc tgcggttctg
     1501 tgaaggagat gagagagaga tacacgaaga tcgttgagat acccttcaac tccaccaaca
     1561 agtaccagtt gtccatccac aagaacccca acacggctga gccccggcac ctgctggtga
     1621 tgaaaggtgc cccggaaagg atcctggacc gctgcagctc catcctcatc cacggcaagg
     1681 agcagcccct ggacgaggag ctgaaggacg cctttcagaa cgcctacctg gagctgggtg
     1741 gtcttggaga gcgcgtgctg ggtttctgcc accttttcct gccagatgac cagtttcccg
     1801 aaggcttcca gtttgacacc gatgatgtga atttccctgt tgataatctc tgcttcgtgg
     1861 ggctcatctc catgatcgac ccaccacggg ctgccgtccc tgatgccgtg ggcaaatgtc
     1921 gaagtgctgg aattaaggtc atcatggtca ccggagacca tccaatcaca gccaaagcca
     1981 ttgccaaagg tgtgggcatc atctcggaag gaaacgagac cgtagaagac atcgctgccc
     2041 gcctcaacat tccagtgagc caggtgaacc ccagggatgc caaggcctgc gtggtacatg
     2101 gaagtgatct gaaggacatg actgccgagc agctggatga cattctgaag taccacacgg
     2161 agatcgtgtt tgccaggacc tctccgcagc agaagctcat cattgtggaa ggctgccaga
     2221 gacagggcgc cattgtggct gtaactggcg acggtgtcaa tgactctccg gctttgaaga
     2281 aggctgacat cggggttgcc atggggatag ctggctcaga cgtgtctaag caagctgccg
     2341 acatgatcct cctggatgac aactttgcct caattgtgac tggagtagag gaaggtcgtc
     2401 tgatttttga taacttgaag aaatccattg cctacaccct caccagtaac attccagaga
     2461 tcaccccctt cctgatattt attattgcca acattccact acccctgggg actgtcacca
     2521 tcctctgcat cgacttggga acagacatgg ttcctgccat ctccctggct tacgagcagg
     2581 ctgagagcga catcatgaag agacagccca gaaaccccca aacggacaaa ctcgtgaacg
     2641 agcggttgat cagcatggcc tacggacaga ttggtatgat ccaggccctg gggggcttct
     2701 tcacctactt tgtgattatg gctgagaacg gcttcctccc gactcacctg ctgggcgtcc
     2761 gagtagactg ggatgaccgc tggatcaacg acgtggagga tagctacggg cagcagtgga
     2821 cctacgaaca gaggaagatc gtggagttca cctgccacac agccttcttt gtcagcatcg
     2881 tggtggtgca gtgggccgac ttggtcatct gcaagaccag gaggaattct gtcttccagc
     2941 aggggatgaa gaacaagatc ttaatatttg gcctcttcga agagacggcc cttgctgctt
     3001 tcctttccta ctgccctgga atgggtgttg ccctgaggat gtatcccctc aaacctacct
     3061 ggtggttctg tgccttcccc tactctcttc tcatcttcgt gtatgacgaa gtccgaaagc
     3121 tcatcatcag gcgacgccct ggcggctggg tagagaagga gacctactac tagaccccct
     3181 cctgcacgcc ggagagcatc acgccacaca ctctgcaccc accacccacc ccctctttgt
     3241 gtacttcagt ctcggaattc ggaattctac cctggtagga aagcaccgaa gcatgtgggg
     3301 aagaagcgag atgtcccgga atgaagcatg tagctatatg gggggggagg ggggagggct
     3361 gcccgagaaa catccgtctg tgggaacaac atcggggaag gtttttatgt gccttgttgt
     3421 ttttgtaaaa aggaaaactc ggaaagactg aaagaataca ttttatatct ggatttttac
     3481 aaataaagat ggctattata atggaa
//
LOCUS       XM_032602829            4877 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase Na+/K+ transporting subunit alpha
            1 (ATP1A1), transcript variant X5, mRNA.
ACCESSION   XM_032602829
VERSION     XM_032602829.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4877
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4877
                     /gene="ATP1A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 16 long SRA reads, 33
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116738896"
     CDS             2991..4544
                     /gene="ATP1A1"
                     /codon_start=1
                     /product="sodium/potassium-transporting ATPase subunit
                     alpha-1 isoform X4"
                     /protein_id="XP_032458720.1"
                     /db_xref="GeneID:116738896"
                     /translation="MKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGE
                     RVLGFCHLFLPDDQFPEGFQFDTDDVNFPVDNLCFVGLISMIDPPRAAVPDAVGKCRS
                     AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVH
                     GSDLKDMTAEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPA
                     LKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTS
                     NIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPQ
                     TDKLVNERLISMAYGQIGMIQALGGFFTYFVIMAENGFLPTHLLGVRVDWDDRWINDV
                     EDSYGQQWTYEQRKIVEFTCHTAFFVSIVVVQWADLVICKTRRNSVFQQGMKNKILIF
                     GLFEETALAAFLSYCPGMGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPG
                     GWVEKETYY"
     misc_feature    <2991..4541
                     /gene="ATP1A1"
                     /note="sodium or proton efflux -- potassium uptake
                     antiporter, P-type ATPase, alpha subunit; Region:
                     ATPase-IIC_X-K; TIGR01106"
                     /db_xref="CDD:273445"
ORIGIN      
        1 gagctgcggc tgggtctggg gcgcagagct gcggcgggag gaggcggaca cgtggcagca
       61 gcagcggtag cagccccggc agcggcggca gaaaaggcat cggcccgagc cgccggccgt
      121 cttccctcct tcccgccccg cggcagccct agctcccttc tctccgctcc cccggtcgcg
      181 cttgctcggc cgggagccgc tctcttcgtt tctttctgat tttcaagcaa caggacccgg
      241 cgcggggcac agaccaccgc cagtatgggg aagggggttg gacgtgataa atatgaaccc
      301 gcagctgttt cagagcatgg cgacaaaaag aaggccaaga aagagaggga tatggatgag
      361 ctgaagaagg aagtttctat ggatgaccac aaacttagcc ttgatgagct tcatcgcaaa
      421 tacggaacgg acttgagccg aggcttaaca actgcccgag ctgctgagat cctggcccga
      481 gacggtccca acgccctcac tccccctccc acgacccccg aatgggtcaa gttctgtcgg
      541 cagctgttcg gggggttctc aatgttactg tggattggag caattctttg tttcttggcc
      601 tatggcatcc aagctgctac agaagaggaa cctcaaaatg ataatgtgag tgccgtcgtt
      661 tctaatttgg attatattag gtatgcataa agtatcctct gtctttgcca cctacttatt
      721 ttcagttacc actggttact tgatggtttt aaacactgag gaaaagtagc atcagcaacg
      781 attgccttca aggccatccg ttcttccttc ttcgtttcaa gttctctctc ccatctcctg
      841 ccctgtgtgt agatgttctt ccaagctggg cctctgccct gcatgttgtt tctgtgaaca
      901 agcagctctg ctcgggccct ggctcaggtc ttgctgccac tgagcggcag agcacagctt
      961 ttaatattgg aacattacac acgtccagaa atgtttggta gccattcttc agaagtcaca
     1021 agttgttttg aaaatatctt tctttaataa agcaggagaa actgattcac ggagaatatt
     1081 tcccaaagtc tgtcaagcta gtgaccaagc gtcagtgtga ctccatttct gacactcttg
     1141 tacaccgtct cgcggaagat aaacatgaag acatgagttc tgtatttctg aagccttgat
     1201 ctctgtgaaa agtctggttt ttattcagtc gaaaattaac tgaatgttcc caattcttta
     1261 ccaagagcca tgcatcctaa cttgtttgtt ctgtcccagc tgtatcttgg agtggtgctg
     1321 tctgccgtcg tcatcataac tgggtgtttc tcctactatc aagaagctaa aagctcaaag
     1381 atcatggagt ccttcaaaaa catggttcct cagcaagccc tcgtgattcg aaatggtgaa
     1441 aaaatgagca taaatgcaga agaagttgtc gttggggatc tggtggaagt gaaaggaggg
     1501 gatcgaatcc ctgctgatct cagaatcatc tctgcaaacg gctgcaaggt ggataactcc
     1561 tcactcactg gagaatcaga accgcagacc aggtctccgg atttcaccaa tgaaaacccc
     1621 ctggagacac ggaacattgc ctttttttca accaactgcg ttgaaggtac tgcacgtggc
     1681 attgtcgtgt acacggggga tcgcaccgtg atgggcagaa tcgccacgct cgcttctggg
     1741 ctggaagggg gccagactcc cattgctgcg gaaattgaac attttatcca catcatcacg
     1801 ggtgtggccg tgttcctggg cgtgtcgttc ttcatccttt ctctgatcct tgaatacacc
     1861 tggcttgagg ccgtcatctt cctcatcggc atcattgtag ccaacgtgcc agaaggtttg
     1921 ctggccaccg tcacggtgtg cctgaccctg accgccaagc gcatggccag gaagaactgc
     1981 ttagtgaaga acctggaggc tgtggagacc ttggggtcca cgtccaccat ctgctcagac
     2041 aaaactggaa ctctgaccca gaaccggatg acggtggccc acatgtggtt cgacaatcag
     2101 atccacgagg ccgacacgac ggagaatcag agtgcgggcc gttgcaggcg atgcgtccga
     2161 gtccgcgctc ctgaagtgca ttgagctgtg ctgcggttct gtgaaggaga tgagagagag
     2221 atacacgaag atcgttgaga tacccttcaa ctccaccaac aagtaccagg tctgagggtc
     2281 tggggagctt gtggggggcc cgaggggaca gaagaggagg acatacgctg gaaaaagatc
     2341 catcatccct tttggaattt tccacgctga aatgctttct agaaacgaat gagtcacagt
     2401 ctttatgaat gctttaactt tacatcttac cctgactcct ccgtatagga aatcctaact
     2461 tatttgagta tgagtaggat aaatgaagcc tcttctaata cgttgtctgg gcccttcttg
     2521 aattctcatt tgtcggttgg agagggggct gggtagggct gcaggtgcac acgcgtgtgc
     2581 cagtccctct tctgaatttt cttcgggaaa attgtgtaca tgaacacgtg tcagggatgt
     2641 atgagcacct cgccacgttt gattcttctg tcgcattcaa agtgtgttac aaggtgcgag
     2701 acacttcaaa gttcagaaat agggcatctt ggatattttt gaaaacaact actagggact
     2761 tacctggtgg tccagtggtt aggactccac cctttcacta acaggggcct gggttccatc
     2821 cctggtcggg gaactaagat cccacaagct gcgcgacgcg gccaaaaaaa gaaaaaaatt
     2881 ccctccctgg gctgtccggc ccagccgtcc atcgtttgta tctccaccat ccttcacagt
     2941 tgtccatcca caagaacccc aacacggctg agccccggca cctgctggtg atgaaaggtg
     3001 ccccggaaag gatcctggac cgctgcagct ccatcctcat ccacggcaag gagcagcccc
     3061 tggacgagga gctgaaggac gcctttcaga acgcctacct ggagctgggt ggtcttggag
     3121 agcgcgtgct gggtttctgc caccttttcc tgccagatga ccagtttccc gaaggcttcc
     3181 agtttgacac cgatgatgtg aatttccctg ttgataatct ctgcttcgtg gggctcatct
     3241 ccatgatcga cccaccacgg gctgccgtcc ctgatgccgt gggcaaatgt cgaagtgctg
     3301 gaattaaggt catcatggtc accggagacc atccaatcac agccaaagcc attgccaaag
     3361 gtgtgggcat catctcggaa ggaaacgaga ccgtagaaga catcgctgcc cgcctcaaca
     3421 ttccagtgag ccaggtgaac cccagggatg ccaaggcctg cgtggtacat ggaagtgatc
     3481 tgaaggacat gactgccgag cagctggatg acattctgaa gtaccacacg gagatcgtgt
     3541 ttgccaggac ctctccgcag cagaagctca tcattgtgga aggctgccag agacagggcg
     3601 ccattgtggc tgtaactggc gacggtgtca atgactctcc ggctttgaag aaggctgaca
     3661 tcggggttgc catggggata gctggctcag acgtgtctaa gcaagctgcc gacatgatcc
     3721 tcctggatga caactttgcc tcaattgtga ctggagtaga ggaaggtcgt ctgatttttg
     3781 ataacttgaa gaaatccatt gcctacaccc tcaccagtaa cattccagag atcaccccct
     3841 tcctgatatt tattattgcc aacattccac tacccctggg gactgtcacc atcctctgca
     3901 tcgacttggg aacagacatg gttcctgcca tctccctggc ttacgagcag gctgagagcg
     3961 acatcatgaa gagacagccc agaaaccccc aaacggacaa actcgtgaac gagcggttga
     4021 tcagcatggc ctacggacag attggtatga tccaggccct ggggggcttc ttcacctact
     4081 ttgtgattat ggctgagaac ggcttcctcc cgactcacct gctgggcgtc cgagtagact
     4141 gggatgaccg ctggatcaac gacgtggagg atagctacgg gcagcagtgg acctacgaac
     4201 agaggaagat cgtggagttc acctgccaca cagccttctt tgtcagcatc gtggtggtgc
     4261 agtgggccga cttggtcatc tgcaagacca ggaggaattc tgtcttccag caggggatga
     4321 agaacaagat cttaatattt ggcctcttcg aagagacggc ccttgctgct ttcctttcct
     4381 actgccctgg aatgggtgtt gccctgagga tgtatcccct caaacctacc tggtggttct
     4441 gtgccttccc ctactctctt ctcatcttcg tgtatgacga agtccgaaag ctcatcatca
     4501 ggcgacgccc tggcggctgg gtagagaagg agacctacta ctagaccccc tcctgcacgc
     4561 cggagagcat cacgccacac actctgcacc caccacccac cccctctttg tgtacttcag
     4621 tctcggaatt cggaattcta ccctggtagg aaagcaccga agcatgtggg gaagaagcga
     4681 gatgtcccgg aatgaagcat gtagctatat ggggggggag gggggagggc tgcccgagaa
     4741 acatccgtct gtgggaacaa catcggggaa ggtttttatg tgccttgttg tttttgtaaa
     4801 aaggaaaact cggaaagact gaaagaatac attttatatc tggattttta caaataaaga
     4861 tggctattat aatggaa
//
LOCUS       XM_032602834            1952 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase Na+/K+ transporting subunit alpha
            1 (ATP1A1), transcript variant X6, mRNA.
ACCESSION   XM_032602834
VERSION     XM_032602834.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1952
                     /gene="ATP1A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 long SRA reads, 27
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116738896"
     CDS             318..1619
                     /gene="ATP1A1"
                     /codon_start=1
                     /product="sodium/potassium-transporting ATPase subunit
                     alpha-1 isoform X5"
                     /protein_id="XP_032458725.1"
                     /db_xref="GeneID:116738896"
                     /translation="MIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII
                     SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTAEQLDDILKYHTEIVFAR
                     TSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMIL
                     LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTIL
                     CIDLGTDMVPAISLAYEQAESDIMKRQPRNPQTDKLVNERLISMAYGQIGMIQALGGF
                     FTYFVIMAENGFLPTHLLGVRVDWDDRWINDVEDSYGQQWTYEQRKIVEFTCHTAFFV
                     SIVVVQWADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYP
                     LKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWVEKETYY"
     misc_feature    <318..1616
                     /gene="ATP1A1"
                     /note="sodium or proton efflux -- potassium uptake
                     antiporter, P-type ATPase, alpha subunit; Region:
                     ATPase-IIC_X-K; TIGR01106"
                     /db_xref="CDD:273445"
ORIGIN      
        1 gagctgcggc tgggtctggg gcgcagagct gcggcgggag gaggcggaca cgtggcagca
       61 gcagcggtag cagccccggc agcggcggca gaaaaggcat cggcccgagc cgccggccgt
      121 cttccctcct tcccgccccg cggcagccct agctcccttc tctccgctcc cccggtcgcg
      181 cttgctcggc cgggagccgc tctcttcgtt tctgccacct tttcctgcca gatgaccagt
      241 ttcccgaagg cttccagttt gacaccgatg atgtgaattt ccctgttgat aatctctgct
      301 tcgtggggct catctccatg atcgacccac cacgggctgc cgtccctgat gccgtgggca
      361 aatgtcgaag tgctggaatt aaggtcatca tggtcaccgg agaccatcca atcacagcca
      421 aagccattgc caaaggtgtg ggcatcatct cggaaggaaa cgagaccgta gaagacatcg
      481 ctgcccgcct caacattcca gtgagccagg tgaaccccag ggatgccaag gcctgcgtgg
      541 tacatggaag tgatctgaag gacatgactg ccgagcagct ggatgacatt ctgaagtacc
      601 acacggagat cgtgtttgcc aggacctctc cgcagcagaa gctcatcatt gtggaaggct
      661 gccagagaca gggcgccatt gtggctgtaa ctggcgacgg tgtcaatgac tctccggctt
      721 tgaagaaggc tgacatcggg gttgccatgg ggatagctgg ctcagacgtg tctaagcaag
      781 ctgccgacat gatcctcctg gatgacaact ttgcctcaat tgtgactgga gtagaggaag
      841 gtcgtctgat ttttgataac ttgaagaaat ccattgccta caccctcacc agtaacattc
      901 cagagatcac ccccttcctg atatttatta ttgccaacat tccactaccc ctggggactg
      961 tcaccatcct ctgcatcgac ttgggaacag acatggttcc tgccatctcc ctggcttacg
     1021 agcaggctga gagcgacatc atgaagagac agcccagaaa cccccaaacg gacaaactcg
     1081 tgaacgagcg gttgatcagc atggcctacg gacagattgg tatgatccag gccctggggg
     1141 gcttcttcac ctactttgtg attatggctg agaacggctt cctcccgact cacctgctgg
     1201 gcgtccgagt agactgggat gaccgctgga tcaacgacgt ggaggatagc tacgggcagc
     1261 agtggaccta cgaacagagg aagatcgtgg agttcacctg ccacacagcc ttctttgtca
     1321 gcatcgtggt ggtgcagtgg gccgacttgg tcatctgcaa gaccaggagg aattctgtct
     1381 tccagcaggg gatgaagaac aagatcttaa tatttggcct cttcgaagag acggcccttg
     1441 ctgctttcct ttcctactgc cctggaatgg gtgttgccct gaggatgtat cccctcaaac
     1501 ctacctggtg gttctgtgcc ttcccctact ctcttctcat cttcgtgtat gacgaagtcc
     1561 gaaagctcat catcaggcga cgccctggcg gctgggtaga gaaggagacc tactactaga
     1621 ccccctcctg cacgccggag agcatcacgc cacacactct gcacccacca cccaccccct
     1681 ctttgtgtac ttcagtctcg gaattcggaa ttctaccctg gtaggaaagc accgaagcat
     1741 gtggggaaga agcgagatgt cccggaatga agcatgtagc tatatggggg gggagggggg
     1801 agggctgccc gagaaacatc cgtctgtggg aacaacatcg gggaaggttt ttatgtgcct
     1861 tgttgttttt gtaaaaagga aaactcggaa agactgaaag aatacatttt atatctggat
     1921 ttttacaaat aaagatggct attataatgg aa
//
LOCUS       XR_004345409             612 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116738921
            (LOC116738921), ncRNA.
ACCESSION   XR_004345409
VERSION     XR_004345409.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..612
                     /gene="LOC116738921"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116738921"
     ncRNA           1..612
                     /ncRNA_class="lncRNA"
                     /gene="LOC116738921"
                     /product="uncharacterized LOC116738921"
                     /db_xref="GeneID:116738921"
ORIGIN      
        1 agttaacacc gactgagcac cttctacgtg gcgatcacag ggccaggcat caggaatcaa
       61 ggtggatgtg gaaagagagt gaggacttta cacggaagcg tttatgggcc aggcctggaa
      121 gtgatctatc ggagcctggc tgcatctcac aaggcaggct gggaagtgtg gtctcactgg
      181 gagctcagga gacagatctt cgtctagaga cgcttgaggc tgtcgtggtg gtggcggtga
      241 tgatctaaga gaccacaggt ggggctgtga ccaggacggg aagaggaggc cctcccctga
      301 gggtctgaaa atccttctcg tgacgggtgt gtccgtcaag aagcagatgt gaaggcagca
      361 gggggagttc cagccatacc acccgcagtg gcccacggga aaatggggag gtaagctcac
      421 ctactcaaga ccacgaaagc atgggcagaa agtttcccct taatctgtgg tccttaaact
      481 tgaatgtgaa atcagaatca cctggagact tattaaacag attgctgctt agcttctggt
      541 tcagtggccc cggctttgct gtgctaacaa gttccaagtg atgccgacga agctcctggc
      601 cagggactcg tg
//
LOCUS       XM_032602848            2884 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate-binding protein 6-like
            (LOC116738927), mRNA.
ACCESSION   XM_032602848
VERSION     XM_032602848.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2884
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2884
                     /gene="LOC116738927"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 31 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738927"
     CDS             173..2062
                     /gene="LOC116738927"
                     /codon_start=1
                     /product="guanylate-binding protein 6-like"
                     /protein_id="XP_032458739.1"
                     /db_xref="GeneID:116738927"
                     /translation="MASGPNMMDPICLVEHDNELLSVNQEALQILEKISQPLVVVAIV
                     GLYRTGKSYLMNRLTGQNNGFPLGSTVQSKTKGIWMWCVPHPSKSDHTLVLLDTEGLG
                     DVEKGDPKNDSWIFALAVLLCSSFVYNSMNTINHQALEQLHYVTELTELIRAKSSSRP
                     GVLEDSTEFVSFFPDFIWTVRDFTLELMLNGHPITEDEYLENALKLIPGKNPKAQTSN
                     LPRECIRHFFPTRKCFVFDRPTNDKELLADIENVSEDQLDPKFLEQTNNFCSYIFTNA
                     KTKTLREGITVTGNRLRTLVVTYVDTINTGAVPCLENAVTTLAQLENSAAVQKAADHY
                     SEQMAQQLRLPTDTLQELLEVHAACEREAIAIFMECSFKDENQEFQKNLAEIIKDKKE
                     GFLLQNEQASVKYCQAKLQELSKALMENISGGTFSVPGGHELYRKAKEMLESEYCQVP
                     RKGVKANEVLQNFLLSQVAMEKSILQADKALSDGEKAVAEEQARRKTAEREQELLKQK
                     LQELEQQTEARQRSLQENIAQLTEKLERGRENLLREHNMMLEHKLKIQEALLKEGFRK
                     KSEEMNAEINHLKNMIDNTKNDDTPWLAVVLDKFGKEVSSLLCTPGKLLGHIVSGVSS
                     LFKTK"
     misc_feature    224..1015
                     /gene="LOC116738927"
                     /note="Guanylate-binding protein, N-terminal domain;
                     Region: GBP; pfam02263"
                     /db_xref="CDD:460516"
     misc_feature    1019..1909
                     /gene="LOC116738927"
                     /note="Guanylate-binding protein, C-terminal domain;
                     Region: GBP_C; pfam02841"
                     /db_xref="CDD:460721"
ORIGIN      
        1 agttttatcc cgttactgta ctggaagggg agactggctt gctcagtctg ttttagcttt
       61 gataaaggag ggacagaaag gtgcaaggag caagtgagca aggtgtgaga ggcaactgga
      121 actgttcttg gtgtgtgtgg agcaggaagc acttctaagt tagcaggttg ccatggcatc
      181 tggacccaac atgatggacc ccatttgtct ggtggaacat gacaatgagc tgctgtcagt
      241 gaaccaggaa gctctacaga ttcttgagaa gatttcacag ccattggtgg tcgtggccat
      301 tgtaggactg tatcgtacag gcaaatccta cttgatgaac cgtcttacag gacagaacaa
      361 tggtttccct ctgggctcta cagtgcagtc taaaacaaag ggcatctgga tgtggtgtgt
      421 gcctcaccct tccaagtcag accataccct ggtccttctg gacacagagg gcctgggcga
      481 tgtggaaaaa ggtgacccta agaatgactc gtggatcttt gccctggctg tgcttctatg
      541 tagcagcttt gtctacaaca gcatgaacac catcaaccac caggccttgg aacaactgca
      601 ttatgtgaca gagctcacag aactcatcag ggccaagtcc tcttcaagac ctggtgtact
      661 agaagattcc acagagtttg tgagtttctt tccagacttt atctggactg tacgggattt
      721 caccctggag ctgatgttaa acggtcaccc tatcacagaa gatgagtacc tggagaatgc
      781 cttgaagctg attccaggca agaatcccaa agcccaaaca tcaaatctac ccagagagtg
      841 tatcaggcat ttctttccaa cacggaaatg ttttgtcttt gaccggccaa caaatgacaa
      901 agaacttcta gctgatattg agaatgtgtc tgaagaccaa ctggatccta aattcctgga
      961 acaaacaaat aatttctgtt cttacatctt caccaatgca aaaaccaaga ccctcagaga
     1021 gggaatcaca gtcactggga accgtctgag gactctggtt gtgacctatg tggataccat
     1081 caatactgga gctgtacctt gtttggagaa cgcagtgaca actctggccc agctggagaa
     1141 ctcagcagcc gtgcagaagg cagccgacca ctacagtgag cagatggccc agcaactgag
     1201 gctccccacg gacacgctcc aggagcttct ggaggtgcac gcagcctgtg agagggaagc
     1261 cattgcaatc ttcatggagt gctccttcaa ggatgaaaat caggaattcc agaagaatct
     1321 tgcggaaatc ataaaggata agaaggaggg tttcttgctg cagaatgaac aggcatctgt
     1381 caaatactgc caggctaaac ttcaggagct ttccaaggcc ctaatggaaa atatttcagg
     1441 aggcactttt tctgttcctg gaggtcatga actctacagg aaagcaaagg aaatgcttga
     1501 aagcgagtat tgccaagtgc ccaggaaagg agtgaaggca aacgaagtcc tccagaactt
     1561 tctgctgtca caggtggcaa tggagaaatc catcctgcag gcagataaag ccctcagtga
     1621 tggggagaag gctgtagcag aggagcaggc caggaggaag acagctgaga gggaacagga
     1681 gctgctgaaa cagaaactgc aggagctgga gcagcagacg gaagcacgac agaggagtct
     1741 ccaggaaaac atagcccagc tgacagagaa gctggagagg ggaagagaaa acctactgag
     1801 agagcacaat atgatgttgg agcataagct gaagatccag gaagctctgc ttaaagaagg
     1861 atttagaaag aaatctgagg agatgaatgc agagataaat catttgaaaa atatgattga
     1921 taatactaaa aatgatgata ctccctggct ggcagtagtc ttggacaaat ttggcaaaga
     1981 ggtctcttca ctattgtgca ctccaggcaa acttcttggt catattgtga gtggtgtgag
     2041 ctccctattt aaaacgaagt aggtcttctt ttaaagaaat tacagataca caatatatgt
     2101 acatgctctg gcctatgttt ggtgtgaatg cttttcactt tcattcagca aatctttaaa
     2161 tataaaaagt ggttactaga aaatatcaat gtctggccca cattagatag aataaatgca
     2221 tggacacttt gatatagcat gttcactttt aggaaatata tgtgtgcaaa atcatatata
     2281 tgtatatata cacacataca tacaagagac ccgttgaggc atccctttta atggcaaaag
     2341 attggaaact acttaaatgt ccatctatat aaattggtaa tatacatttt ccatgtacat
     2401 atactggaat actatgtagc cagtaaaaaa attgatagtg gaggtttata tgtataaata
     2461 tagaacaacc ttgaagatat atagtagagt gaaaaaaatg aggtacaaaa cagtttgtat
     2521 aatctgttca ccataaaaaa tgcaattatt atgtgcactc atatatatgt acacatagaa
     2581 cgcctctgga agattcatta gaaagtggta tcattggttc cttctgggga gaacagcttg
     2641 gcattagtga tggaggggac acacactttt cattatatcc tctatctttt caattttgta
     2701 aagaaagctt gtattatcat ttctcaaatg acaaagaaaa cataaagtat aatactaaaa
     2761 atgataataa atggaatgtg aaatgactat tagatgatga aattgctcat tgcttctaga
     2821 aatgacatca gtctgttcaa tgagttggat cagaatacta gaaagcataa aatttgcatc
     2881 ctaa
//
LOCUS       XM_032602871            1795 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fumarate hydratase (FH), mRNA.
ACCESSION   XM_032602871
VERSION     XM_032602871.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1795
                     /gene="FH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 mRNAs, 16 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738941"
     CDS             30..1562
                     /gene="FH"
                     /codon_start=1
                     /product="fumarate hydratase, mitochondrial"
                     /protein_id="XP_032458762.1"
                     /db_xref="GeneID:116738941"
                     /translation="MDRALRLLARSRFLSRAPASDPRPGPGPAGAALLLLRPPNVVRM
                     ASQSSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGILKRA
                     AAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNR
                     AIEMLGGQLGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEVLLPGLQKLHDAL
                     DAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYATTRIKGAMPRIYELAAGG
                     TAVGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTAACS
                     LMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHV
                     AITIGGSSGHFELNVFKPLMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMN
                     ESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKATAIELGYLTAEQFDEWVKPKDMLG
                     PK"
     misc_feature    168..1553
                     /gene="FH"
                     /note="Fumarate hydratase class II [Energy production and
                     conversion]; Region: FumC; COG0114"
                     /db_xref="CDD:439884"
ORIGIN      
        1 cccggaagtt ctacccggac cgccgcgcta tggatcgcgc gctacggctc ctcgcgcgtt
       61 cgcgtttcct ctcacgcgct ccagcttccg acccccgccc tggccccggc ccggctggcg
      121 cggcactctt gctgcttcgg cctccgaacg tcgttcgaat ggcaagccaa agttcttttc
      181 ggatagaata tgataccttt ggtgaactca aggtcccaaa tgataagtat tatggcgccc
      241 agactgtgag atcaacaatg aactttaaga ttggaggggt gacagaacgc atgccaatcc
      301 cagttattaa agcatttggc atcttgaagc gagcagctgc tgaagtaaac caggattatg
      361 gtcttgatcc aaagattgct aatgcaataa tgaaggcagc agatgaggta gctgaaggta
      421 aattaaatga tcattttcct ctcgtggtat ggcagactgg atcaggaacc cagacaaata
      481 tgaatgtaaa tgaagtcatt agcaatagag caattgaaat gctaggaggt caacttggca
      541 gcaagaaacc cgtgcatccc aatgatcatg ttaataaaag ccagagctca aatgatactt
      601 ttcccacagc aatgcatatt gctgctgcag tagaagttca tgaagtactg ctaccaggac
      661 tacagaagct acatgatgcc cttgatgcaa aatccaaaga atttgcccag atcatcaaaa
      721 ttgggcgtac tcatacacag gatgctgttc cacttactct tgggcaggaa tttagtggtt
      781 atgttcaaca agtgaaatat gcaacaacaa gaataaaagg tgccatgcca agaatctatg
      841 agctcgcagc tgggggcact gctgtcggta ctggtttaaa tactagaatt ggctttgcag
      901 aaaaggttgc cgcaaaagtg gctgcactca caggcttgcc tttcgtcaca gctccaaata
      961 aatttgaagc tttggctgct catgatgctt tggttgaact cagtggagcc atgaacacgg
     1021 ccgcttgcag tctgatgaag attgcaaatg atattcgttt tctgggttct ggtcctcgct
     1081 caggtctggg agaactgatt ttgcctgaaa atgaaccagg aagcagtatc atgccaggca
     1141 aggtgaaccc cacccagtgt gaggcactga ccatggttgc agcccaggtc atgggcaatc
     1201 atgtcgccat taccattgga ggcagcagtg gacattttga gttgaatgtt ttcaagccat
     1261 tgatgattaa aaatgtgttg cactcagcca gactgttggg ggatgcatca gtttccttca
     1321 cagaaaactg tgtggtggga atccaggcca acacagaaag gatcaacaag ctaatgaatg
     1381 agtctctaat gttggtgaca gctcttaatc ctcatatagg gtatgacaaa gcagccaaga
     1441 ttgctaagac cgcacacaaa aatggatcga ccttaaaggc aactgctatt gaacttggct
     1501 atctcacagc agagcagttt gatgagtggg taaaacctaa ggacatgctg ggtccaaagt
     1561 gatttaaata aattcataat aaaaattatt gtcatataaa ataaaaagtg aaacagactc
     1621 cttatatttc ttaaacaaaa atggataaat gtgaaaggaa actgctattg aacttgactg
     1681 tctctagcag agcagtttgg tcagtgtata aaatgccagg acatgctagg tccaaaatga
     1741 attttaaaag tgtaaaataa aataattaaa tgtataaaat caaaaggaaa acaga
//
LOCUS       XM_032602885            1383 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 3 (DHRS3),
            transcript variant X1, mRNA.
ACCESSION   XM_032602885
VERSION     XM_032602885.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1383
                     /gene="DHRS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116738948"
     CDS             182..1288
                     /gene="DHRS3"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase 3 isoform
                     X1"
                     /protein_id="XP_032458776.1"
                     /db_xref="GeneID:116738948"
                     /translation="MVWKWLGALVVFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLIT
                     GGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREE
                     VYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHVNTLGQFWTTKAFLP
                     RMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVL
                     PFHTSTEMFQGMRVRTLRPALPDCRVVGILAARHDGKGSQGLGASSVDSLKAAKPVPG
                     AQELRFAQGDIIPRFPNLFPPLKPETVARRTVEAVQLNQALLLLPWTMHALIILKRPF
                     QEVKHPSAFIGCQPPGNQVPLWLLWTQWASEELL"
     misc_feature    338..1177
                     /gene="DHRS3"
                     /note="human 17-beta-hydroxysteroid dehydrogenase XI-like,
                     classical (c) SDRs; Region: 17beta-HSDXI-like_SDR_c;
                     cd05339"
                     /db_xref="CDD:187598"
     misc_feature    order(389..397,464..472,548..556,617..619,698..706,
                     743..745,755..757,836..847,851..856)
                     /gene="DHRS3"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187598"
     misc_feature    order(479..481,491..493,587..592,599..604,611..613,
                     623..628,635..640,647..649,734..742,746..751,758..763,
                     770..775,779..787,791..796,854..862,1157..1162,1169..1171)
                     /gene="DHRS3"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187598"
     misc_feature    order(620..622,704..706,743..745,755..757)
                     /gene="DHRS3"
                     /note="active site"
                     /db_xref="CDD:187598"
     misc_feature    order(647..649,656..658,785..787,794..796,806..808)
                     /gene="DHRS3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187598"
ORIGIN      
        1 cacccggtgc ttgctttgca tttgggaaga ggtgatttca agagtggcca ggtgggacgc
       61 ctctctgccc cttattcggt gtatttatta ttgtttgggg gtgttttctt ttttaagtcc
      121 tgttttgtgc ggtccgggga gtttcgcccc cccacccctg cccggctccg cggcgcggag
      181 gatggtgtgg aaatggctgg gcgcgctggt ggtgttccct ctgcagatga tctatctggt
      241 ggtgaaggct gccgtcggac tggtgctgcc cgccaagctg cgggacctgt ctcgggagaa
      301 cgtccttatc accggcggcg ggagaggcat cgggcgccag ctcgctcgcg agttcgcgga
      361 acgcggcgcc agaaagatcg ttctgtgggg ccggactgag aaatgcctga aggagacgac
      421 ggaggagatt cggcagatgg gcaccgagtg ccactacttc atctgcgatg tgggcaaccg
      481 ggaggaggtg taccagacgg ccaaagctgt ccgggagaag gtgggcgaca tcaccatcct
      541 ggtgaacaac gccgccgtgg tccacgggaa gagcctgatg gacagtgacg atgatgccct
      601 tctcaagtcc cagcacgtca acaccctggg ccagttctgg accaccaagg ccttcttgcc
      661 acggatgctg gagctgcaga acggccacat cgtgtgtctc aactccgtgc tggcgctctc
      721 tgccatcccc ggtgccatcg actactgcac gtccaaagcc tcagccttcg ccttcatgga
      781 gagcctgacc ctggggctgc tggactgtcc aggcgtcagt gccaccaccg tgctgccctt
      841 ccacaccagt accgagatgt tccagggcat gagggtcagg accctgaggc cagcccttcc
      901 agactgcagg gtcgtgggca tcctggcagc ccgtcatgat ggcaaaggaa gccaagggtt
      961 gggggcgagc tccgtggact ctctgaaggc agccaagccc gtgccggggg cccaggagtt
     1021 gcgttttgct cagggtgaca tcatccccag gttccccaac ctcttcccgc ccctaaagcc
     1081 ggagaccgtg gcccggagga cggtggaagc tgtgcagctc aatcaggccc tcctcctcct
     1141 cccgtggacg atgcacgccc tcattatctt gaaaaggcct tttcaggagg tgaagcaccc
     1201 cagtgccttt atcggatgtc aacccccagg aaaccaggtt cccctctggc tgctgtggac
     1261 acagtgggca tctgaggagc tactctaact gcagcatact cccacaggct gccctcgagg
     1321 agatccacaa attctcagga acctacacct gcatgaacac tttcaaaggg cgaacataaa
     1381 ggc
//
LOCUS       XM_032602892            1696 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 3 (DHRS3),
            transcript variant X2, mRNA.
ACCESSION   XM_032602892
VERSION     XM_032602892.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1696
                     /gene="DHRS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116738948"
     CDS             179..1258
                     /gene="DHRS3"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase 3 isoform
                     X2"
                     /protein_id="XP_032458783.1"
                     /db_xref="GeneID:116738948"
                     /translation="MVWKWLGALVVFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLIT
                     GGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREE
                     VYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHVNTLGQFWTTKAFLP
                     RMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVL
                     PFHTSTEMFQGMRVRTLRPALPDCRVVGILAARHDGKGSQGLGASSVDSLKAAKPVPG
                     AQELRFAQGDIIPRFPNLFPPLKPETVARRTVEAVQLNQALLLLPWTMHALIILKSIL
                     PQAALEEIHKFSGTYTCMNTFKGRT"
     misc_feature    335..1192
                     /gene="DHRS3"
                     /note="human 17-beta-hydroxysteroid dehydrogenase XI-like,
                     classical (c) SDRs; Region: 17beta-HSDXI-like_SDR_c;
                     cd05339"
                     /db_xref="CDD:187598"
     misc_feature    order(386..394,461..469,545..553,614..616,695..703,
                     740..742,752..754,833..844,848..853)
                     /gene="DHRS3"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187598"
     misc_feature    order(476..478,488..490,584..589,596..601,608..610,
                     620..625,632..637,644..646,731..739,743..748,755..760,
                     767..772,776..784,788..793,851..859,1154..1159,1166..1168,
                     1178..1180)
                     /gene="DHRS3"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187598"
     misc_feature    order(617..619,701..703,740..742,752..754)
                     /gene="DHRS3"
                     /note="active site"
                     /db_xref="CDD:187598"
     misc_feature    order(644..646,653..655,782..784,791..793,803..805)
                     /gene="DHRS3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187598"
ORIGIN      
        1 ccggtgcttg ctttgcattt gggaagaggt gatttcaaga gtggccaggt gggacgcctc
       61 tctgcccctt attcggtgta tttattattg tttgggggtg ttttcttttt taagtcctgt
      121 tttgtgcggt ccggggagtt tcgccccccc acccctgccc ggctccgcgg cgcggaggat
      181 ggtgtggaaa tggctgggcg cgctggtggt gttccctctg cagatgatct atctggtggt
      241 gaaggctgcc gtcggactgg tgctgcccgc caagctgcgg gacctgtctc gggagaacgt
      301 ccttatcacc ggcggcggga gaggcatcgg gcgccagctc gctcgcgagt tcgcggaacg
      361 cggcgccaga aagatcgttc tgtggggccg gactgagaaa tgcctgaagg agacgacgga
      421 ggagattcgg cagatgggca ccgagtgcca ctacttcatc tgcgatgtgg gcaaccggga
      481 ggaggtgtac cagacggcca aagctgtccg ggagaaggtg ggcgacatca ccatcctggt
      541 gaacaacgcc gccgtggtcc acgggaagag cctgatggac agtgacgatg atgcccttct
      601 caagtcccag cacgtcaaca ccctgggcca gttctggacc accaaggcct tcttgccacg
      661 gatgctggag ctgcagaacg gccacatcgt gtgtctcaac tccgtgctgg cgctctctgc
      721 catccccggt gccatcgact actgcacgtc caaagcctca gccttcgcct tcatggagag
      781 cctgaccctg gggctgctgg actgtccagg cgtcagtgcc accaccgtgc tgcccttcca
      841 caccagtacc gagatgttcc agggcatgag ggtcaggacc ctgaggccag cccttccaga
      901 ctgcagggtc gtgggcatcc tggcagcccg tcatgatggc aaaggaagcc aagggttggg
      961 ggcgagctcc gtggactctc tgaaggcagc caagcccgtg ccgggggccc aggagttgcg
     1021 ttttgctcag ggtgacatca tccccaggtt ccccaacctc ttcccgcccc taaagccgga
     1081 gaccgtggcc cggaggacgg tggaagctgt gcagctcaat caggccctcc tcctcctccc
     1141 gtggacgatg cacgccctca ttatcttgaa aagcatactc ccacaggctg ccctcgagga
     1201 gatccacaaa ttctcaggaa cctacacctg catgaacact ttcaaagggc gaacataaag
     1261 gcaggacgca gagacaggct caaaagccac agaacctgag ggggtgtggg cacctgggca
     1321 tacgcccatg tgcctgtccc ttgacacact tctgctgcat gagcaggact gctcctcccc
     1381 tggggaggaa tctggctgtg cccccaggcc agccccagga cctttgcaca ggactgacgg
     1441 gtgtaactct gacccccgtg gggaggcaag aaaccagcca gcagctgcct tgacactttt
     1501 gtacatttct gattctgtag agtttattgt taaatcgctt ctcaagtcta accagcctcg
     1561 gcaatgtgca tagactattt ccgggagggt ctgtgcccac acactcctcc ttcccctcca
     1621 aaatccactc atcctcagct tgtgcaaact ggttgaacgg caggaataca aaataaagag
     1681 agatggcttt tgcgaa
//
LOCUS       XM_032602901            1219 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 3 (DHRS3),
            transcript variant X3, mRNA.
ACCESSION   XM_032602901
VERSION     XM_032602901.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1219
                     /gene="DHRS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116738948"
     CDS             63..1124
                     /gene="DHRS3"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase 3 isoform
                     X3"
                     /protein_id="XP_032458792.1"
                     /db_xref="GeneID:116738948"
                     /translation="MIYLVVKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFA
                     ERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDI
                     TILVNNAAVVHGKSLMDSDDDALLKSQHVNTLGQFWTTKAFLPRMLELQNGHIVCLNS
                     VLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVR
                     TLRPALPDCRVVGILAARHDGKGSQGLGASSVDSLKAAKPVPGAQELRFAQGDIIPRF
                     PNLFPPLKPETVARRTVEAVQLNQALLLLPWTMHALIILKRPFQEVKHPSAFIGCQPP
                     GNQVPLWLLWTQWASEELL"
     misc_feature    174..1013
                     /gene="DHRS3"
                     /note="human 17-beta-hydroxysteroid dehydrogenase XI-like,
                     classical (c) SDRs; Region: 17beta-HSDXI-like_SDR_c;
                     cd05339"
                     /db_xref="CDD:187598"
     misc_feature    order(225..233,300..308,384..392,453..455,534..542,
                     579..581,591..593,672..683,687..692)
                     /gene="DHRS3"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187598"
     misc_feature    order(315..317,327..329,423..428,435..440,447..449,
                     459..464,471..476,483..485,570..578,582..587,594..599,
                     606..611,615..623,627..632,690..698,993..998,1005..1007)
                     /gene="DHRS3"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187598"
     misc_feature    order(456..458,540..542,579..581,591..593)
                     /gene="DHRS3"
                     /note="active site"
                     /db_xref="CDD:187598"
     misc_feature    order(483..485,492..494,621..623,630..632,642..644)
                     /gene="DHRS3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187598"
ORIGIN      
        1 gccctttttc tcacccggtg cttgctttgc atttgggaag aggtgatttc aagagtggcc
       61 agatgatcta tctggtggtg aaggctgccg tcggactggt gctgcccgcc aagctgcggg
      121 acctgtctcg ggagaacgtc cttatcaccg gcggcgggag aggcatcggg cgccagctcg
      181 ctcgcgagtt cgcggaacgc ggcgccagaa agatcgttct gtggggccgg actgagaaat
      241 gcctgaagga gacgacggag gagattcggc agatgggcac cgagtgccac tacttcatct
      301 gcgatgtggg caaccgggag gaggtgtacc agacggccaa agctgtccgg gagaaggtgg
      361 gcgacatcac catcctggtg aacaacgccg ccgtggtcca cgggaagagc ctgatggaca
      421 gtgacgatga tgcccttctc aagtcccagc acgtcaacac cctgggccag ttctggacca
      481 ccaaggcctt cttgccacgg atgctggagc tgcagaacgg ccacatcgtg tgtctcaact
      541 ccgtgctggc gctctctgcc atccccggtg ccatcgacta ctgcacgtcc aaagcctcag
      601 ccttcgcctt catggagagc ctgaccctgg ggctgctgga ctgtccaggc gtcagtgcca
      661 ccaccgtgct gcccttccac accagtaccg agatgttcca gggcatgagg gtcaggaccc
      721 tgaggccagc ccttccagac tgcagggtcg tgggcatcct ggcagcccgt catgatggca
      781 aaggaagcca agggttgggg gcgagctccg tggactctct gaaggcagcc aagcccgtgc
      841 cgggggccca ggagttgcgt tttgctcagg gtgacatcat ccccaggttc cccaacctct
      901 tcccgcccct aaagccggag accgtggccc ggaggacggt ggaagctgtg cagctcaatc
      961 aggccctcct cctcctcccg tggacgatgc acgccctcat tatcttgaaa aggccttttc
     1021 aggaggtgaa gcaccccagt gcctttatcg gatgtcaacc cccaggaaac caggttcccc
     1081 tctggctgct gtggacacag tgggcatctg aggagctact ctaactgcag catactccca
     1141 caggctgccc tcgaggagat ccacaaattc tcaggaacct acacctgcat gaacactttc
     1201 aaagggcgaa cataaaggc
//
LOCUS       XM_032602907            1173 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 3 (DHRS3),
            transcript variant X4, mRNA.
ACCESSION   XM_032602907
VERSION     XM_032602907.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1173
                     /gene="DHRS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116738948"
     CDS             17..1078
                     /gene="DHRS3"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase 3 isoform
                     X3"
                     /protein_id="XP_032458798.1"
                     /db_xref="GeneID:116738948"
                     /translation="MIYLVVKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFA
                     ERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDI
                     TILVNNAAVVHGKSLMDSDDDALLKSQHVNTLGQFWTTKAFLPRMLELQNGHIVCLNS
                     VLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVR
                     TLRPALPDCRVVGILAARHDGKGSQGLGASSVDSLKAAKPVPGAQELRFAQGDIIPRF
                     PNLFPPLKPETVARRTVEAVQLNQALLLLPWTMHALIILKRPFQEVKHPSAFIGCQPP
                     GNQVPLWLLWTQWASEELL"
     misc_feature    128..967
                     /gene="DHRS3"
                     /note="human 17-beta-hydroxysteroid dehydrogenase XI-like,
                     classical (c) SDRs; Region: 17beta-HSDXI-like_SDR_c;
                     cd05339"
                     /db_xref="CDD:187598"
     misc_feature    order(179..187,254..262,338..346,407..409,488..496,
                     533..535,545..547,626..637,641..646)
                     /gene="DHRS3"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187598"
     misc_feature    order(269..271,281..283,377..382,389..394,401..403,
                     413..418,425..430,437..439,524..532,536..541,548..553,
                     560..565,569..577,581..586,644..652,947..952,959..961)
                     /gene="DHRS3"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187598"
     misc_feature    order(410..412,494..496,533..535,545..547)
                     /gene="DHRS3"
                     /note="active site"
                     /db_xref="CDD:187598"
     misc_feature    order(437..439,446..448,575..577,584..586,596..598)
                     /gene="DHRS3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187598"
ORIGIN      
        1 agcaggaggt tacaagatga tctatctggt ggtgaaggct gccgtcggac tggtgctgcc
       61 cgccaagctg cgggacctgt ctcgggagaa cgtccttatc accggcggcg ggagaggcat
      121 cgggcgccag ctcgctcgcg agttcgcgga acgcggcgcc agaaagatcg ttctgtgggg
      181 ccggactgag aaatgcctga aggagacgac ggaggagatt cggcagatgg gcaccgagtg
      241 ccactacttc atctgcgatg tgggcaaccg ggaggaggtg taccagacgg ccaaagctgt
      301 ccgggagaag gtgggcgaca tcaccatcct ggtgaacaac gccgccgtgg tccacgggaa
      361 gagcctgatg gacagtgacg atgatgccct tctcaagtcc cagcacgtca acaccctggg
      421 ccagttctgg accaccaagg ccttcttgcc acggatgctg gagctgcaga acggccacat
      481 cgtgtgtctc aactccgtgc tggcgctctc tgccatcccc ggtgccatcg actactgcac
      541 gtccaaagcc tcagccttcg ccttcatgga gagcctgacc ctggggctgc tggactgtcc
      601 aggcgtcagt gccaccaccg tgctgccctt ccacaccagt accgagatgt tccagggcat
      661 gagggtcagg accctgaggc cagcccttcc agactgcagg gtcgtgggca tcctggcagc
      721 ccgtcatgat ggcaaaggaa gccaagggtt gggggcgagc tccgtggact ctctgaaggc
      781 agccaagccc gtgccggggg cccaggagtt gcgttttgct cagggtgaca tcatccccag
      841 gttccccaac ctcttcccgc ccctaaagcc ggagaccgtg gcccggagga cggtggaagc
      901 tgtgcagctc aatcaggccc tcctcctcct cccgtggacg atgcacgccc tcattatctt
      961 gaaaaggcct tttcaggagg tgaagcaccc cagtgccttt atcggatgtc aacccccagg
     1021 aaaccaggtt cccctctggc tgctgtggac acagtgggca tctgaggagc tactctaact
     1081 gcagcatact cccacaggct gccctcgagg agatccacaa attctcagga acctacacct
     1141 gcatgaacac tttcaaaggg cgaacataaa ggc
//
LOCUS       XM_032602918            1210 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 3 (DHRS3),
            transcript variant X5, mRNA.
ACCESSION   XM_032602918
VERSION     XM_032602918.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1210
                     /gene="DHRS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116738948"
     CDS             180..1115
                     /gene="DHRS3"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase 3 isoform
                     X4"
                     /protein_id="XP_032458809.1"
                     /db_xref="GeneID:116738948"
                     /translation="MVWKWLGALVVFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLIT
                     GGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREE
                     VYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHVNTLGQFWTTKAFLP
                     RMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVL
                     PFHTSTEMFQGMRVRFPNLFPPLKPETVARRTVEAVQLNQALLLLPWTMHALIILKRP
                     FQEVKHPSAFIGCQPPGNQVPLWLLWTQWASEELL"
     misc_feature    336..1004
                     /gene="DHRS3"
                     /note="human 17-beta-hydroxysteroid dehydrogenase XI-like,
                     classical (c) SDRs; Region: 17beta-HSDXI-like_SDR_c;
                     cd05339"
                     /db_xref="CDD:187598"
     misc_feature    order(387..395,462..470,546..554,615..617,696..704,
                     741..743,753..755,834..845,849..854)
                     /gene="DHRS3"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187598"
     misc_feature    order(477..479,489..491,585..590,597..602,609..611,
                     621..626,633..638,645..647,732..740,744..749,756..761,
                     768..773,777..785,789..794,852..860,984..989,996..998)
                     /gene="DHRS3"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187598"
     misc_feature    order(618..620,702..704,741..743,753..755)
                     /gene="DHRS3"
                     /note="active site"
                     /db_xref="CDD:187598"
     misc_feature    order(645..647,654..656,783..785,792..794,804..806)
                     /gene="DHRS3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187598"
ORIGIN      
        1 cccggtgctt gctttgcatt tgggaagagg tgatttcaag agtggccagg tgggacgcct
       61 ctctgcccct tattcggtgt atttattatt gtttgggggt gttttctttt ttaagtcctg
      121 ttttgtgcgg tccggggagt ttcgcccccc cacccctgcc cggctccgcg gcgcggagga
      181 tggtgtggaa atggctgggc gcgctggtgg tgttccctct gcagatgatc tatctggtgg
      241 tgaaggctgc cgtcggactg gtgctgcccg ccaagctgcg ggacctgtct cgggagaacg
      301 tccttatcac cggcggcggg agaggcatcg ggcgccagct cgctcgcgag ttcgcggaac
      361 gcggcgccag aaagatcgtt ctgtggggcc ggactgagaa atgcctgaag gagacgacgg
      421 aggagattcg gcagatgggc accgagtgcc actacttcat ctgcgatgtg ggcaaccggg
      481 aggaggtgta ccagacggcc aaagctgtcc gggagaaggt gggcgacatc accatcctgg
      541 tgaacaacgc cgccgtggtc cacgggaaga gcctgatgga cagtgacgat gatgcccttc
      601 tcaagtccca gcacgtcaac accctgggcc agttctggac caccaaggcc ttcttgccac
      661 ggatgctgga gctgcagaac ggccacatcg tgtgtctcaa ctccgtgctg gcgctctctg
      721 ccatccccgg tgccatcgac tactgcacgt ccaaagcctc agccttcgcc ttcatggaga
      781 gcctgaccct ggggctgctg gactgtccag gcgtcagtgc caccaccgtg ctgcccttcc
      841 acaccagtac cgagatgttc cagggcatga gggtcaggtt ccccaacctc ttcccgcccc
      901 taaagccgga gaccgtggcc cggaggacgg tggaagctgt gcagctcaat caggccctcc
      961 tcctcctccc gtggacgatg cacgccctca ttatcttgaa aaggcctttt caggaggtga
     1021 agcaccccag tgcctttatc ggatgtcaac ccccaggaaa ccaggttccc ctctggctgc
     1081 tgtggacaca gtgggcatct gaggagctac tctaactgca gcatactccc acaggctgcc
     1141 ctcgaggaga tccacaaatt ctcaggaacc tacacctgca tgaacacttt caaagggcga
     1201 acataaaggc
//
LOCUS       XM_032602929            1754 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 3 (DHRS3),
            transcript variant X6, mRNA.
ACCESSION   XM_032602929
VERSION     XM_032602929.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1754
                     /gene="DHRS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 17 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738948"
     CDS             408..1316
                     /gene="DHRS3"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase 3 isoform
                     X5"
                     /protein_id="XP_032458820.1"
                     /db_xref="GeneID:116738948"
                     /translation="MVWKWLGALVVFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLIT
                     GGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREE
                     VYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHVNTLGQFWTTKAFLP
                     RMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVL
                     PFHTSTEMFQGMRVRFPNLFPPLKPETVARRTVEAVQLNQALLLLPWTMHALIILKSI
                     LPQAALEEIHKFSGTYTCMNTFKGRT"
     misc_feature    564..1250
                     /gene="DHRS3"
                     /note="human 17-beta-hydroxysteroid dehydrogenase XI-like,
                     classical (c) SDRs; Region: 17beta-HSDXI-like_SDR_c;
                     cd05339"
                     /db_xref="CDD:187598"
     misc_feature    order(615..623,690..698,774..782,843..845,924..932,
                     969..971,981..983,1062..1073,1077..1082)
                     /gene="DHRS3"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187598"
     misc_feature    order(705..707,717..719,813..818,825..830,837..839,
                     849..854,861..866,873..875,960..968,972..977,984..989,
                     996..1001,1005..1013,1017..1022,1080..1088,1212..1217,
                     1224..1226,1236..1238)
                     /gene="DHRS3"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187598"
     misc_feature    order(846..848,930..932,969..971,981..983)
                     /gene="DHRS3"
                     /note="active site"
                     /db_xref="CDD:187598"
     misc_feature    order(873..875,882..884,1011..1013,1020..1022,1032..1034)
                     /gene="DHRS3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187598"
ORIGIN      
        1 tttttttttc ttcccctgcc taaactcctc tgtcagcctg taaacattac ctgagaattc
       61 cccagccgaa acggctgctg gggcacgaaa gttcttgtta gaactttcca cctccggctt
      121 cccctccacc cctcttactg tcccaacctt ctgagacgct ttttctcctc ccgaggattt
      181 atctcaccca cccacccaca cctccccccc cccccgccct ttttctcacc cggtgcttgc
      241 tttgcatttg ggaagaggtg atttcaagag tggccaggtg ggacgcctct ctgcccctta
      301 ttcggtgtat ttattattgt ttgggggtgt tttctttttt aagtcctgtt ttgtgcggtc
      361 cggggagttt cgccccccca cccctgcccg gctccgcggc gcggaggatg gtgtggaaat
      421 ggctgggcgc gctggtggtg ttccctctgc agatgatcta tctggtggtg aaggctgccg
      481 tcggactggt gctgcccgcc aagctgcggg acctgtctcg ggagaacgtc cttatcaccg
      541 gcggcgggag aggcatcggg cgccagctcg ctcgcgagtt cgcggaacgc ggcgccagaa
      601 agatcgttct gtggggccgg actgagaaat gcctgaagga gacgacggag gagattcggc
      661 agatgggcac cgagtgccac tacttcatct gcgatgtggg caaccgggag gaggtgtacc
      721 agacggccaa agctgtccgg gagaaggtgg gcgacatcac catcctggtg aacaacgccg
      781 ccgtggtcca cgggaagagc ctgatggaca gtgacgatga tgcccttctc aagtcccagc
      841 acgtcaacac cctgggccag ttctggacca ccaaggcctt cttgccacgg atgctggagc
      901 tgcagaacgg ccacatcgtg tgtctcaact ccgtgctggc gctctctgcc atccccggtg
      961 ccatcgacta ctgcacgtcc aaagcctcag ccttcgcctt catggagagc ctgaccctgg
     1021 ggctgctgga ctgtccaggc gtcagtgcca ccaccgtgct gcccttccac accagtaccg
     1081 agatgttcca gggcatgagg gtcaggttcc ccaacctctt cccgccccta aagccggaga
     1141 ccgtggcccg gaggacggtg gaagctgtgc agctcaatca ggccctcctc ctcctcccgt
     1201 ggacgatgca cgccctcatt atcttgaaaa gcatactccc acaggctgcc ctcgaggaga
     1261 tccacaaatt ctcaggaacc tacacctgca tgaacacttt caaagggcga acataaaggc
     1321 aggacgcaga gacaggctca aaagccacag aacctgaggg ggtgtgggca cctgggcata
     1381 cgcccatgtg cctgtccctt gacacacttc tgctgcatga gcaggactgc tcctcccctg
     1441 gggaggaatc tggctgtgcc cccaggccag ccccaggacc tttgcacagg actgacgggt
     1501 gtaactctga cccccgtggg gaggcaagaa accagccagc agctgccttg acacttttgt
     1561 acatttctga ttctgtagag tttattgtta aatcgcttct caagtctaac cagcctcggc
     1621 aatgtgcata gactatttcc gggagggtct gtgcccacac actcctcctt cccctccaaa
     1681 atccactcat cctcagcttg tgcaaactgg ttgaacggca ggaatacaaa ataaagagag
     1741 atggcttttg cgaa
//
LOCUS       XM_032602937            1471 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 3 (DHRS3),
            transcript variant X7, mRNA.
ACCESSION   XM_032602937
VERSION     XM_032602937.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1471
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1471
                     /gene="DHRS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116738948"
     CDS             525..1376
                     /gene="DHRS3"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase 3 isoform
                     X6"
                     /protein_id="XP_032458828.1"
                     /db_xref="GeneID:116738948"
                     /translation="MGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHG
                     KSLMDSDDDALLKSQHVNTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID
                     YCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRTLRPALPDCRVV
                     GILAARHDGKGSQGLGASSVDSLKAAKPVPGAQELRFAQGDIIPRFPNLFPPLKPETV
                     ARRTVEAVQLNQALLLLPWTMHALIILKRPFQEVKHPSAFIGCQPPGNQVPLWLLWTQ
                     WASEELL"
     misc_feature    525..1265
                     /gene="DHRS3"
                     /note="human 17-beta-hydroxysteroid dehydrogenase XI-like,
                     classical (c) SDRs; Region: 17beta-HSDXI-like_SDR_c;
                     cd05339"
                     /db_xref="CDD:187598"
     misc_feature    order(567..569,579..581,675..680,687..692,699..701,
                     711..716,723..728,735..737,822..830,834..839,846..851,
                     858..863,867..875,879..884,942..950,1245..1250,1257..1259)
                     /gene="DHRS3"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187598"
     misc_feature    order(708..710,792..794,831..833,843..845)
                     /gene="DHRS3"
                     /note="active site"
                     /db_xref="CDD:187598"
     misc_feature    order(735..737,744..746,873..875,882..884,894..896)
                     /gene="DHRS3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187598"
ORIGIN      
        1 agtgtttcaa atatgacctg cccgcccaca ggtgtgtccg ctcagcccct ccttgctggc
       61 gacctgctgt gtatcacacg ctcggttctg ctgtttgctt gttctcatct ggccacagga
      121 tagattttta ttcataccct cctgctggag gtgctgggcg tggagagcta tgtgccctcc
      181 aaattgtgac tttcccgccc ctccccaccc tgccgtgctt tggggtctgg tgggtatttt
      241 ccttccttct gagaagccag ctgaacaccg ctctgctcca aaacatggag cccatgggac
      301 atgcctgcca aagacctgcc tagggtcttg gatctttcca gggctgccaa ttataaacag
      361 atgctcctcc tgggacccac ccggaggcca cccagctcat gtccctggtg ggaccatgcg
      421 ccacagctga actccagcaa tgaacgccaa ggccaagcat ttgtatcgtt ctgtggggcc
      481 ggactgagaa atgcctgaag gagacgacgg aggagattcg gcagatgggc accgagtgcc
      541 actacttcat ctgcgatgtg ggcaaccggg aggaggtgta ccagacggcc aaagctgtcc
      601 gggagaaggt gggcgacatc accatcctgg tgaacaacgc cgccgtggtc cacgggaaga
      661 gcctgatgga cagtgacgat gatgcccttc tcaagtccca gcacgtcaac accctgggcc
      721 agttctggac caccaaggcc ttcttgccac ggatgctgga gctgcagaac ggccacatcg
      781 tgtgtctcaa ctccgtgctg gcgctctctg ccatccccgg tgccatcgac tactgcacgt
      841 ccaaagcctc agccttcgcc ttcatggaga gcctgaccct ggggctgctg gactgtccag
      901 gcgtcagtgc caccaccgtg ctgcccttcc acaccagtac cgagatgttc cagggcatga
      961 gggtcaggac cctgaggcca gcccttccag actgcagggt cgtgggcatc ctggcagccc
     1021 gtcatgatgg caaaggaagc caagggttgg gggcgagctc cgtggactct ctgaaggcag
     1081 ccaagcccgt gccgggggcc caggagttgc gttttgctca gggtgacatc atccccaggt
     1141 tccccaacct cttcccgccc ctaaagccgg agaccgtggc ccggaggacg gtggaagctg
     1201 tgcagctcaa tcaggccctc ctcctcctcc cgtggacgat gcacgccctc attatcttga
     1261 aaaggccttt tcaggaggtg aagcacccca gtgcctttat cggatgtcaa cccccaggaa
     1321 accaggttcc cctctggctg ctgtggacac agtgggcatc tgaggagcta ctctaactgc
     1381 agcatactcc cacaggctgc cctcgaggag atccacaaat tctcaggaac ctacacctgc
     1441 atgaacactt tcaaagggcg aacataaagg c
//
LOCUS       XM_032602949            2004 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cathepsin S (CTSS), mRNA.
ACCESSION   XM_032602949
VERSION     XM_032602949.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2004
                     /gene="CTSS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 28 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738968"
     CDS             117..1139
                     /gene="CTSS"
                     /codon_start=1
                     /product="cathepsin S"
                     /protein_id="XP_032458840.1"
                     /db_xref="GeneID:116738968"
                     /translation="MGAPAGSIIMKWLVWVLLLCSSVMAQQHRDSTLDHHWDLWKKTY
                     GKQYKEQNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHLADMTSEEVISLMS
                     SLRVPSQWQRNVTYKSNPNQKLPDSLDWREKGCVTEVKYQGSCGACWAFSAVGALEAQ
                     VKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAM
                     DEKCQYDAKNRAATCSRYIELPFGSEDALKEAVANKGPVSVAVDAHHSSFFLYRSGVY
                     YDPLCTQTVNHGVLVIGYGNLNGRDYWLVKNSWGLNFGDQGYIRMARNSGNHCGIANY
                     PSYPEI"
     misc_feature    225..404
                     /gene="CTSS"
                     /note="Cathepsin propeptide inhibitor domain (I29);
                     Region: Inhibitor_I29; smart00848"
                     /db_xref="CDD:214853"
     misc_feature    486..1130
                     /gene="CTSS"
                     /note="Papain family cysteine protease; Region:
                     Peptidase_C1; pfam00112"
                     /db_xref="CDD:425470"
     misc_feature    order(540..542,558..560,975..977,1035..1037)
                     /gene="CTSS"
                     /note="active site"
                     /db_xref="CDD:239068"
     misc_feature    order(693..698,894..896,969..971,978..980,1116..1118)
                     /gene="CTSS"
                     /note="S2 subsite [active]"
                     /db_xref="CDD:239068"
ORIGIN      
        1 ctcattgtgg atacctcatg tgacaagttc caatttcttt ttaaagtcac tttaactgaa
       61 gtctctttgt tgcctttgaa atctttggag agagcccacc atcaagcatt cttagtatgg
      121 gagcacctgc tggttctatc ataatgaaat ggctggtgtg ggtgctcctg ctgtgctcct
      181 ctgtgatggc acaacagcac agagattcta ctctggatca tcactgggat ctctggaaga
      241 aaacctatgg gaaacaatac aaggaacaga atgaggaagt agcacggcgt ctcatctggg
      301 aaaagaatct aaaaactgtg atgcttcaca atctagagca ttcaatggga atgcattcat
      361 atgatctagg catgaaccac ctggcagaca tgaccagtga agaagtgata tctttgatga
      421 gttccctgag agttcccagc caatggcaga gaaatgtcac ttacaagtca aaccctaatc
      481 agaaattgcc tgattctctg gactggagag agaaggggtg tgttactgaa gtgaaatacc
      541 agggctcttg tggtgcttgt tgggctttca gtgctgtggg agccctggaa gcacaagtga
      601 agctgaaaac aggaaagctg gtgtccctga gtgcacagaa cctggtggat tgctcaactg
      661 aaaaatatgg gaataaaggc tgcaacggtg gcttcatgac agaggctttc caatatatca
      721 ttgataacaa cggcatcgat tcagaagctt cctatcccta caaagccatg gatgaaaagt
      781 gccagtatga tgcaaaaaat cgagctgcga cgtgttcaag gtatattgaa cttcccttcg
      841 gcagtgaaga tgccttaaaa gaagctgtgg ccaacaaagg acctgtgtct gttgctgtag
      901 atgcacacca ttcttctttc ttcctctaca gaagtggtgt ctactatgac cccttgtgta
      961 ctcagactgt gaatcatggt gtactggtga ttggatatgg taaccttaac gggagagact
     1021 actggcttgt gaaaaacagc tggggcctca actttggtga ccaaggatat atacggatgg
     1081 caagaaatag tggaaatcac tgtgggattg ctaattatcc ctcttacccg gaaatctaga
     1141 ggacctcttt gttttataac aattcaagaa agaagaaaca ctttctcaca atttaatttt
     1201 acctgctgta accagtagaa atgtgtgtca tgatcaatat atatttactg tactaacaga
     1261 aaatatagtt tgattcatct acttttttaa ctttgcagat cttggggaaa agtttgctaa
     1321 gtaaattaat aatgtactat agatataact gtatgaaaat tggtcaacct gagataatct
     1381 gtcatgtttt tcattgtctt attttatttg tccttttaag tcccctgata tcctgctgaa
     1441 ccttgatggc atatagattc ttaataaata actgcctttt caactttgta tcattaccat
     1501 gaggcaggag acagatgggc tcccggggca aatagtttga tttctttcct tgtggactga
     1561 tactccgaca tgggaataac aggacaattg agagaggagt ctgggccctg cccagataga
     1621 agataagaga ccacatattt ctcattcctg aagtcaggag accccccccc cgcccccccc
     1681 ccccggacta cacatgcgca gaaaggctcc ttggaggtca aaaggagagt gatgccaagt
     1741 ggccaaatct acccatacac ctcttcggta gaatccatct tggctaagag atgtgcatgc
     1801 acacatggga aaatcctgag ctataccaaa ttcagacttt gaatcaggca aatcaaaatg
     1861 attggcctaa ggaaacctgg aaaaaatgcc ccatataagt gatttaaact gccaccaggg
     1921 cacgactctt tctgagcccg ctcgtgtgtc tatccacacg tactgcactt ttttctgcaa
     1981 ataaatactt gtttcactac tttc
//
LOCUS       XM_032602960            3598 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif containing 62 (TRIM62),
            transcript variant X1, mRNA.
ACCESSION   XM_032602960
VERSION     XM_032602960.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3598
                     /gene="TRIM62"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738975"
     CDS             145..1572
                     /gene="TRIM62"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM62"
                     /protein_id="XP_032458851.1"
                     /db_xref="GeneID:116738975"
                     /translation="MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEA
                     QGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILSARRAARPCQAHDKVKLF
                     CLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSEREHTEALQLL
                     KRQLAETKSSTKSLRTTIGEVFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRY
                     SQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTG
                     PLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRF
                     DVEVSVLGSEAFSGGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMH
                     DGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLC
                     SYFSPGQSHANGKNVQPLRINTVRI"
     misc_feature    151..315
                     /gene="TRIM62"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 62 (TRIM62) and similar proteins;
                     Region: RING-HC_TRIM62_C-IV; cd16608"
                     /db_xref="CDD:438270"
     misc_feature    415..528
                     /gene="TRIM62"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 62 (TRIM62) and similar proteins;
                     Region: Bbox2_TRIM62_C-IV; cd19792"
                     /db_xref="CDD:380850"
     misc_feature    <514..>948
                     /gene="TRIM62"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    994..1557
                     /gene="TRIM62"
                     /note="PRY/SPRY domain in tripartite motif-binding protein
                     62 (TRIM62); Region: SPRY_PRY_TRIM62; cd13744"
                     /db_xref="CDD:293978"
ORIGIN      
        1 aggctcggct ggttccgggt tgggaggctg cactcggacc ggagcagtgg ccgctgagcc
       61 ggcgggggtg ctgtccccga cagcgtcgcg ctctccagcc ggccccctgc atctcggggg
      121 accctctccg ccgtccccgg cgccatggcg tgcagcctca aggacgagct gctctgctct
      181 atctgtctga gcatctacca ggacccggtg agcctgggct gcgagcacta cttctgccgc
      241 cgctgcatca ccgagcactg ggtgaggcag gaggctcagg gcgcccgcga ctgccccgag
      301 tgccggcgca cgtttgccga gcccgcgctc gcgcccagcc tcaagctggc caacatcgtg
      361 gagcgctaca gcgccttccc gctggacgcc atcctcagtg cacgccgtgc cgcgcgaccc
      421 tgccaggcac acgacaaggt caagctcttc tgcctcacgg accgcgcgct gctctgcttt
      481 ttctgcgatg aacccgcgct gcatgagcag caccaagtca cgggcatcga tgacgccttc
      541 gaggagttgc agagggagct gaaggagcag cttcaggccc ttcaggacag tgagcgggag
      601 cacacggagg cgctgcagct gctcaagaga cagctggcgg agaccaagtc ttccaccaaa
      661 agcctgcgga ccaccattgg ggaggtcttt gagcggctgc accggctgct gcgggaacgg
      721 cagaaggcca tgctggagga gctagaggca gacacggccc gcacgctgac tgacattgag
      781 cagaaagtcc agcgctacag ccagcagctg cgcaaggtgc aggagggggc ccagatcctg
      841 caggagcggc tggctgaaac tgaccggcac accttcctgg ccggggtggc ctcgctgtct
      901 gagcggctca aagggaaaat ccatgagacc aatctgacct acgaagactt cccaacctcc
      961 aagtacacag gtcccctgca gtacaccatc tggaagtccc tgttccagga catccaccca
     1021 gtgccagccg ccctgaccct ggacccgggc accgcccacc agcgcctcat cctgtccgac
     1081 gactgcacca tcgtggccta cggcaacctg cacccacagc cgctgcagga ctcaccgaag
     1141 cgcttcgacg tggaggtgtc ggtgctgggc tctgaggcct tcagtggcgg cgtccactac
     1201 tgggaggtgg tggtggcgga gaagacccag tgggtgatcg ggctggcgca cgaagccgcg
     1261 agccgtaagg gcagcatcca gatccagcct agccgcggct tctactgcat cgtcatgcac
     1321 gacggcaacc agtacagcgc ctgcaccgag ccctggacgc ggctcaatgt ccgcgacaag
     1381 ctcgacaagg tgggagtctt cctggactac gaccaaggcc tgctcatctt ctataacgcc
     1441 gatgacatgt cctggctgta caccttccgc gagaagttcc ccggcaagct ctgctcctac
     1501 ttcagccccg ggcagagcca cgccaatggc aagaacgtgc agccgctgcg gatcaacacg
     1561 gtccgcatct agtgctgcgg agggagaccg cagacctgag catggccgcc agcgagagcc
     1621 ctgccccgga gagcggaggc cgggactcca gcccagccgg gccaacctga tatctcaggc
     1681 ctgttgttta ccctcatttc cctgtaaaat ggaggttgtg ctccacgatt ccgaagctct
     1741 tccagcattg atgttctgta gctctgacct tactggggat gcagctttgg tccaagccgt
     1801 gtgacacggc ttctcctcag ggcagcccct gcccagccct catgcccctc ctctcagggg
     1861 cagaggactg cgtccctatg tctccctcct gcccacatgc cctaagctca ggatgtgtca
     1921 gtggttgcca gcagttggct gcctgaaaga gacacagaac cctcttatgc ttccaggcct
     1981 aagacttgcc cctgatcaag ctagtgaagg gccgttttat cctcaatccc agcccacagt
     2041 ggacacaggc ggtagctagt cccggggttg cctgagaacc accttctgct tccatccctg
     2101 taccaagagc ttcacgattt tcccacttat ctgtgggtag aaatgatgct gtggcctgtg
     2161 gaagccacag gcacaggctg tgtgagccca aggcactcac gtcagaactt accagccagg
     2221 gaagactgtc agtagttaag cccacatgtt acagtcactg tgccaccacc ttcctgccca
     2281 caggtcttaa ggccagataa tgtcacaccc ggacgtagga caatcaccac tggatggtgg
     2341 aggtccccgg cagctccaaa caagggtcca gccaggcctc tgtgatcagg ctagggtgta
     2401 gcgaggctgt ggggagcagt attttagtca ggccctgagc actggggtgg gtgtcagctg
     2461 ggcccccctc atcaatcttg gcatctgtct cagttgggat cctgttgcag aaaacaagag
     2521 ctgttttagc tctagacaag gatttattac caggtcccta gtggctttgt aaaatcattg
     2581 gaagggctgg aggagcagac tctgctgaat ttccaggaac agctcccagc cgccaaattc
     2641 atcatgtctg ttgagaccag gaatactgct cccatctgca ggaagcccct gcatcaagaa
     2701 gctgctggct gcagaactgc gctgactctg ctactgtccg cgccagtcag tggatgtcct
     2761 gagggctgcc tccccccgtt caattcaatt tccagatcca aatgtctacg agggggggct
     2821 tccctggtgg tgcagtggtt gggagtccgc ctgccgatgc aggggatgcg ggttcgtgcc
     2881 ccggtccggg aagatcccca catgccgcag agcggctggg cctgtgagcc atggccgctg
     2941 agcctgcgcg tctggagcct gtgctccgca acgggagagg ccacaacagt gagaggcccg
     3001 cgtactgcaa aaaaacaaaa aacaaatgtc tacgagggat tctgtgtggg gaaacttaag
     3061 tcagatccag aacctgggct gcaagggagt ctgggaaatg tacttttctt ctttccagcc
     3121 tcatccgtac aaaaaggcac aatagaagaa agttagaatg gatgttgaac aagcccacct
     3181 tcagtttttg ccattggaat ccacctctag gccttggctt tgaagcagca gagcctctag
     3241 ttgtcctgct ccgtggcttt gtccttgtcc aggacaggag ccccaggagc gggcctgcag
     3301 gaccaagctg aaatgtctcc caggccttag cttttctttc tagtcctggg gcctagattc
     3361 tgaacttggc gtctctgacc accgccatct caaaggagcc agactagctg aacttggggg
     3421 ggctcccacc tcacaactgc tgcccactgg ggcctccctt gggtgggagg aatcctcagt
     3481 ctcactcacc ccaaccattc agctaccaga atctgggcca cccccagcag tatttttatt
     3541 ttaaatgttg cccattttgt gagttatgat gaatttatat taaattaaag ttacaggc
//
LOCUS       XM_032602968            3610 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif containing 62 (TRIM62),
            transcript variant X2, mRNA.
ACCESSION   XM_032602968
VERSION     XM_032602968.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3610
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3610
                     /gene="TRIM62"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738975"
     CDS             157..1584
                     /gene="TRIM62"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM62"
                     /protein_id="XP_032458859.1"
                     /db_xref="GeneID:116738975"
                     /translation="MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEA
                     QGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILSARRAARPCQAHDKVKLF
                     CLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSEREHTEALQLL
                     KRQLAETKSSTKSLRTTIGEVFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRY
                     SQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTG
                     PLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRF
                     DVEVSVLGSEAFSGGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMH
                     DGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLC
                     SYFSPGQSHANGKNVQPLRINTVRI"
     misc_feature    163..327
                     /gene="TRIM62"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 62 (TRIM62) and similar proteins;
                     Region: RING-HC_TRIM62_C-IV; cd16608"
                     /db_xref="CDD:438270"
     misc_feature    427..540
                     /gene="TRIM62"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 62 (TRIM62) and similar proteins;
                     Region: Bbox2_TRIM62_C-IV; cd19792"
                     /db_xref="CDD:380850"
     misc_feature    <526..>960
                     /gene="TRIM62"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1006..1569
                     /gene="TRIM62"
                     /note="PRY/SPRY domain in tripartite motif-binding protein
                     62 (TRIM62); Region: SPRY_PRY_TRIM62; cd13744"
                     /db_xref="CDD:293978"
ORIGIN      
        1 tgcactcgga ccggagcagt ggccgctgag ccggcggggc tcctgcttca acgggcctgc
       61 tccccgcacc catccctagg tgctgtcccc gacagcgtcg cgctctccag ccggccccct
      121 gcatctcggg ggaccctctc cgccgtcccc ggcgccatgg cgtgcagcct caaggacgag
      181 ctgctctgct ctatctgtct gagcatctac caggacccgg tgagcctggg ctgcgagcac
      241 tacttctgcc gccgctgcat caccgagcac tgggtgaggc aggaggctca gggcgcccgc
      301 gactgccccg agtgccggcg cacgtttgcc gagcccgcgc tcgcgcccag cctcaagctg
      361 gccaacatcg tggagcgcta cagcgccttc ccgctggacg ccatcctcag tgcacgccgt
      421 gccgcgcgac cctgccaggc acacgacaag gtcaagctct tctgcctcac ggaccgcgcg
      481 ctgctctgct ttttctgcga tgaacccgcg ctgcatgagc agcaccaagt cacgggcatc
      541 gatgacgcct tcgaggagtt gcagagggag ctgaaggagc agcttcaggc ccttcaggac
      601 agtgagcggg agcacacgga ggcgctgcag ctgctcaaga gacagctggc ggagaccaag
      661 tcttccacca aaagcctgcg gaccaccatt ggggaggtct ttgagcggct gcaccggctg
      721 ctgcgggaac ggcagaaggc catgctggag gagctagagg cagacacggc ccgcacgctg
      781 actgacattg agcagaaagt ccagcgctac agccagcagc tgcgcaaggt gcaggagggg
      841 gcccagatcc tgcaggagcg gctggctgaa actgaccggc acaccttcct ggccggggtg
      901 gcctcgctgt ctgagcggct caaagggaaa atccatgaga ccaatctgac ctacgaagac
      961 ttcccaacct ccaagtacac aggtcccctg cagtacacca tctggaagtc cctgttccag
     1021 gacatccacc cagtgccagc cgccctgacc ctggacccgg gcaccgccca ccagcgcctc
     1081 atcctgtccg acgactgcac catcgtggcc tacggcaacc tgcacccaca gccgctgcag
     1141 gactcaccga agcgcttcga cgtggaggtg tcggtgctgg gctctgaggc cttcagtggc
     1201 ggcgtccact actgggaggt ggtggtggcg gagaagaccc agtgggtgat cgggctggcg
     1261 cacgaagccg cgagccgtaa gggcagcatc cagatccagc ctagccgcgg cttctactgc
     1321 atcgtcatgc acgacggcaa ccagtacagc gcctgcaccg agccctggac gcggctcaat
     1381 gtccgcgaca agctcgacaa ggtgggagtc ttcctggact acgaccaagg cctgctcatc
     1441 ttctataacg ccgatgacat gtcctggctg tacaccttcc gcgagaagtt ccccggcaag
     1501 ctctgctcct acttcagccc cgggcagagc cacgccaatg gcaagaacgt gcagccgctg
     1561 cggatcaaca cggtccgcat ctagtgctgc ggagggagac cgcagacctg agcatggccg
     1621 ccagcgagag ccctgccccg gagagcggag gccgggactc cagcccagcc gggccaacct
     1681 gatatctcag gcctgttgtt taccctcatt tccctgtaaa atggaggttg tgctccacga
     1741 ttccgaagct cttccagcat tgatgttctg tagctctgac cttactgggg atgcagcttt
     1801 ggtccaagcc gtgtgacacg gcttctcctc agggcagccc ctgcccagcc ctcatgcccc
     1861 tcctctcagg ggcagaggac tgcgtcccta tgtctccctc ctgcccacat gccctaagct
     1921 caggatgtgt cagtggttgc cagcagttgg ctgcctgaaa gagacacaga accctcttat
     1981 gcttccaggc ctaagacttg cccctgatca agctagtgaa gggccgtttt atcctcaatc
     2041 ccagcccaca gtggacacag gcggtagcta gtcccggggt tgcctgagaa ccaccttctg
     2101 cttccatccc tgtaccaaga gcttcacgat tttcccactt atctgtgggt agaaatgatg
     2161 ctgtggcctg tggaagccac aggcacaggc tgtgtgagcc caaggcactc acgtcagaac
     2221 ttaccagcca gggaagactg tcagtagtta agcccacatg ttacagtcac tgtgccacca
     2281 ccttcctgcc cacaggtctt aaggccagat aatgtcacac ccggacgtag gacaatcacc
     2341 actggatggt ggaggtcccc ggcagctcca aacaagggtc cagccaggcc tctgtgatca
     2401 ggctagggtg tagcgaggct gtggggagca gtattttagt caggccctga gcactggggt
     2461 gggtgtcagc tgggcccccc tcatcaatct tggcatctgt ctcagttggg atcctgttgc
     2521 agaaaacaag agctgtttta gctctagaca aggatttatt accaggtccc tagtggcttt
     2581 gtaaaatcat tggaagggct ggaggagcag actctgctga atttccagga acagctccca
     2641 gccgccaaat tcatcatgtc tgttgagacc aggaatactg ctcccatctg caggaagccc
     2701 ctgcatcaag aagctgctgg ctgcagaact gcgctgactc tgctactgtc cgcgccagtc
     2761 agtggatgtc ctgagggctg cctccccccg ttcaattcaa tttccagatc caaatgtcta
     2821 cgaggggggg cttccctggt ggtgcagtgg ttgggagtcc gcctgccgat gcaggggatg
     2881 cgggttcgtg ccccggtccg ggaagatccc cacatgccgc agagcggctg ggcctgtgag
     2941 ccatggccgc tgagcctgcg cgtctggagc ctgtgctccg caacgggaga ggccacaaca
     3001 gtgagaggcc cgcgtactgc aaaaaaacaa aaaacaaatg tctacgaggg attctgtgtg
     3061 gggaaactta agtcagatcc agaacctggg ctgcaaggga gtctgggaaa tgtacttttc
     3121 ttctttccag cctcatccgt acaaaaaggc acaatagaag aaagttagaa tggatgttga
     3181 acaagcccac cttcagtttt tgccattgga atccacctct aggccttggc tttgaagcag
     3241 cagagcctct agttgtcctg ctccgtggct ttgtccttgt ccaggacagg agccccagga
     3301 gcgggcctgc aggaccaagc tgaaatgtct cccaggcctt agcttttctt tctagtcctg
     3361 gggcctagat tctgaacttg gcgtctctga ccaccgccat ctcaaaggag ccagactagc
     3421 tgaacttggg ggggctccca cctcacaact gctgcccact ggggcctccc ttgggtggga
     3481 ggaatcctca gtctcactca ccccaaccat tcagctacca gaatctgggc cacccccagc
     3541 agtattttta ttttaaatgt tgcccatttt gtgagttatg atgaatttat attaaattaa
     3601 agttacaggc
//
LOCUS       XM_032602976            3616 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif containing 62 (TRIM62),
            transcript variant X3, mRNA.
ACCESSION   XM_032602976
VERSION     XM_032602976.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3616
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3616
                     /gene="TRIM62"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738975"
     CDS             163..1590
                     /gene="TRIM62"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM62"
                     /protein_id="XP_032458867.1"
                     /db_xref="GeneID:116738975"
                     /translation="MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEA
                     QGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILSARRAARPCQAHDKVKLF
                     CLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSEREHTEALQLL
                     KRQLAETKSSTKSLRTTIGEVFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRY
                     SQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTG
                     PLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRF
                     DVEVSVLGSEAFSGGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMH
                     DGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLC
                     SYFSPGQSHANGKNVQPLRINTVRI"
     misc_feature    169..333
                     /gene="TRIM62"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 62 (TRIM62) and similar proteins;
                     Region: RING-HC_TRIM62_C-IV; cd16608"
                     /db_xref="CDD:438270"
     misc_feature    433..546
                     /gene="TRIM62"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 62 (TRIM62) and similar proteins;
                     Region: Bbox2_TRIM62_C-IV; cd19792"
                     /db_xref="CDD:380850"
     misc_feature    <532..>966
                     /gene="TRIM62"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1012..1575
                     /gene="TRIM62"
                     /note="PRY/SPRY domain in tripartite motif-binding protein
                     62 (TRIM62); Region: SPRY_PRY_TRIM62; cd13744"
                     /db_xref="CDD:293978"
ORIGIN      
        1 ggccgcgcgg ggccgggtct tggggccggg atcgggcagc tgagcgtgct cacagccctc
       61 ctctcctctg ccaggcacag ccgaggtgct gtccccgaca gcgtcgcgct ctccagccgg
      121 ccccctgcat ctcgggggac cctctccgcc gtccccggcg ccatggcgtg cagcctcaag
      181 gacgagctgc tctgctctat ctgtctgagc atctaccagg acccggtgag cctgggctgc
      241 gagcactact tctgccgccg ctgcatcacc gagcactggg tgaggcagga ggctcagggc
      301 gcccgcgact gccccgagtg ccggcgcacg tttgccgagc ccgcgctcgc gcccagcctc
      361 aagctggcca acatcgtgga gcgctacagc gccttcccgc tggacgccat cctcagtgca
      421 cgccgtgccg cgcgaccctg ccaggcacac gacaaggtca agctcttctg cctcacggac
      481 cgcgcgctgc tctgcttttt ctgcgatgaa cccgcgctgc atgagcagca ccaagtcacg
      541 ggcatcgatg acgccttcga ggagttgcag agggagctga aggagcagct tcaggccctt
      601 caggacagtg agcgggagca cacggaggcg ctgcagctgc tcaagagaca gctggcggag
      661 accaagtctt ccaccaaaag cctgcggacc accattgggg aggtctttga gcggctgcac
      721 cggctgctgc gggaacggca gaaggccatg ctggaggagc tagaggcaga cacggcccgc
      781 acgctgactg acattgagca gaaagtccag cgctacagcc agcagctgcg caaggtgcag
      841 gagggggccc agatcctgca ggagcggctg gctgaaactg accggcacac cttcctggcc
      901 ggggtggcct cgctgtctga gcggctcaaa gggaaaatcc atgagaccaa tctgacctac
      961 gaagacttcc caacctccaa gtacacaggt cccctgcagt acaccatctg gaagtccctg
     1021 ttccaggaca tccacccagt gccagccgcc ctgaccctgg acccgggcac cgcccaccag
     1081 cgcctcatcc tgtccgacga ctgcaccatc gtggcctacg gcaacctgca cccacagccg
     1141 ctgcaggact caccgaagcg cttcgacgtg gaggtgtcgg tgctgggctc tgaggccttc
     1201 agtggcggcg tccactactg ggaggtggtg gtggcggaga agacccagtg ggtgatcggg
     1261 ctggcgcacg aagccgcgag ccgtaagggc agcatccaga tccagcctag ccgcggcttc
     1321 tactgcatcg tcatgcacga cggcaaccag tacagcgcct gcaccgagcc ctggacgcgg
     1381 ctcaatgtcc gcgacaagct cgacaaggtg ggagtcttcc tggactacga ccaaggcctg
     1441 ctcatcttct ataacgccga tgacatgtcc tggctgtaca ccttccgcga gaagttcccc
     1501 ggcaagctct gctcctactt cagccccggg cagagccacg ccaatggcaa gaacgtgcag
     1561 ccgctgcgga tcaacacggt ccgcatctag tgctgcggag ggagaccgca gacctgagca
     1621 tggccgccag cgagagccct gccccggaga gcggaggccg ggactccagc ccagccgggc
     1681 caacctgata tctcaggcct gttgtttacc ctcatttccc tgtaaaatgg aggttgtgct
     1741 ccacgattcc gaagctcttc cagcattgat gttctgtagc tctgacctta ctggggatgc
     1801 agctttggtc caagccgtgt gacacggctt ctcctcaggg cagcccctgc ccagccctca
     1861 tgcccctcct ctcaggggca gaggactgcg tccctatgtc tccctcctgc ccacatgccc
     1921 taagctcagg atgtgtcagt ggttgccagc agttggctgc ctgaaagaga cacagaaccc
     1981 tcttatgctt ccaggcctaa gacttgcccc tgatcaagct agtgaagggc cgttttatcc
     2041 tcaatcccag cccacagtgg acacaggcgg tagctagtcc cggggttgcc tgagaaccac
     2101 cttctgcttc catccctgta ccaagagctt cacgattttc ccacttatct gtgggtagaa
     2161 atgatgctgt ggcctgtgga agccacaggc acaggctgtg tgagcccaag gcactcacgt
     2221 cagaacttac cagccaggga agactgtcag tagttaagcc cacatgttac agtcactgtg
     2281 ccaccacctt cctgcccaca ggtcttaagg ccagataatg tcacacccgg acgtaggaca
     2341 atcaccactg gatggtggag gtccccggca gctccaaaca agggtccagc caggcctctg
     2401 tgatcaggct agggtgtagc gaggctgtgg ggagcagtat tttagtcagg ccctgagcac
     2461 tggggtgggt gtcagctggg cccccctcat caatcttggc atctgtctca gttgggatcc
     2521 tgttgcagaa aacaagagct gttttagctc tagacaagga tttattacca ggtccctagt
     2581 ggctttgtaa aatcattgga agggctggag gagcagactc tgctgaattt ccaggaacag
     2641 ctcccagccg ccaaattcat catgtctgtt gagaccagga atactgctcc catctgcagg
     2701 aagcccctgc atcaagaagc tgctggctgc agaactgcgc tgactctgct actgtccgcg
     2761 ccagtcagtg gatgtcctga gggctgcctc cccccgttca attcaatttc cagatccaaa
     2821 tgtctacgag ggggggcttc cctggtggtg cagtggttgg gagtccgcct gccgatgcag
     2881 gggatgcggg ttcgtgcccc ggtccgggaa gatccccaca tgccgcagag cggctgggcc
     2941 tgtgagccat ggccgctgag cctgcgcgtc tggagcctgt gctccgcaac gggagaggcc
     3001 acaacagtga gaggcccgcg tactgcaaaa aaacaaaaaa caaatgtcta cgagggattc
     3061 tgtgtgggga aacttaagtc agatccagaa cctgggctgc aagggagtct gggaaatgta
     3121 cttttcttct ttccagcctc atccgtacaa aaaggcacaa tagaagaaag ttagaatgga
     3181 tgttgaacaa gcccaccttc agtttttgcc attggaatcc acctctaggc cttggctttg
     3241 aagcagcaga gcctctagtt gtcctgctcc gtggctttgt ccttgtccag gacaggagcc
     3301 ccaggagcgg gcctgcagga ccaagctgaa atgtctccca ggccttagct tttctttcta
     3361 gtcctggggc ctagattctg aacttggcgt ctctgaccac cgccatctca aaggagccag
     3421 actagctgaa cttggggggg ctcccacctc acaactgctg cccactgggg cctcccttgg
     3481 gtgggaggaa tcctcagtct cactcacccc aaccattcag ctaccagaat ctgggccacc
     3541 cccagcagta tttttatttt aaatgttgcc cattttgtga gttatgatga atttatatta
     3601 aattaaagtt acaggc
//
LOCUS       XM_032602991             771 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF superfamily member 4 (TNFSF4), mRNA.
ACCESSION   XM_032602991
VERSION     XM_032602991.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..771
                     /gene="TNFSF4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 6 Proteins, and 58%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116738982"
     CDS             1..549
                     /gene="TNFSF4"
                     /codon_start=1
                     /product="tumor necrosis factor ligand superfamily member
                     4"
                     /protein_id="XP_032458882.1"
                     /db_xref="GeneID:116738982"
                     /translation="MEGVQPLDEHVGNAPGRRFLRNKLLLVSSVIQGLGLLLCLTYIC
                     LRFSAQVPSQYPPIQSIRVQFTKCENENGFIITSPNKDGTMKVQNNSIIINCDGFYLI
                     SLKGYFSQELSLRLQYRKGREPLFSLSKVTSVDSVTVASLAFKDKVYLDVTTHSASCE
                     DIQVNGGELILIHQNPGGFCVY"
     misc_feature    order(175..177,301..303,307..309,445..447,460..462,
                     532..534,544..546)
                     /gene="TNFSF4"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238108"
     misc_feature    order(223..228,337..339,358..360,367..369)
                     /gene="TNFSF4"
                     /note="receptor binding sites [active]"
                     /db_xref="CDD:238108"
     misc_feature    247..546
                     /gene="TNFSF4"
                     /note="Tumour necrosis factor family; Region: TNF;
                     smart00207"
                     /db_xref="CDD:214557"
ORIGIN      
        1 atggaagggg tccaacccct ggatgagcat gttggaaacg caccaggacg gagattcttg
       61 aggaacaagc tattgctggt gtcctccgta attcaggggc tggggctgct cctgtgtctc
      121 acctacatct gtctgcgctt ctctgctcag gtgccatctc aataccctcc aatccaaagt
      181 atcagagtac agtttaccaa gtgtgaaaat gagaatggtt tcatcatcac atccccaaac
      241 aaggatggaa ccatgaaggt gcaaaacaac tcaatcatca tcaactgtga tgggttttat
      301 ctcatctccc tgaagggcta cttctctcag gagctcagcc tcaggcttca gtaccggaag
      361 ggtcgagaac ccctcttctc cctgagcaag gtcacatctg ttgactctgt cacagtagcc
      421 agtctggctt tcaaggacaa agtctacctg gatgtgacca ctcacagtgc ctcctgcgaa
      481 gacattcagg tgaatggtgg ggaattgatt ctcattcatc aaaatcctgg tggattctgt
      541 gtctactgag gacctgatgg ctgcatctag gccaggcacc aacatgaatg ccaaactggg
      601 ggtggacagg acacagattc ttccttggga gtggaggagt tatcccagct cagccctcat
      661 atatggccac ttgagatgtg accagaagat cactccctcc cccactcagg gatatttaaa
      721 tctttatttt atgtaccaat taactttatg tatttatcct tatatcttct a
//
LOCUS       XM_032603005            3722 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane p24 trafficking protein 5
            (TMED5), transcript variant X1, mRNA.
ACCESSION   XM_032603005
VERSION     XM_032603005.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3722
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3722
                     /gene="TMED5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 17 long SRA reads, 12
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116738985"
     CDS             329..1009
                     /gene="TMED5"
                     /codon_start=1
                     /product="transmembrane emp24 domain-containing protein 5
                     isoform X1"
                     /protein_id="XP_032458896.1"
                     /db_xref="GeneID:116738985"
                     /translation="MGDKIWLPFPVVLLASQLLPGAAGFTPSLDSDFTFTLPAGQKEC
                     FYQPMPLKASLEIEYQVLDGAGLDIDFHLASPKGRTLVFEQRKSDGVHTIETEGGDYM
                     FCFDNTFSTISEKVIFFELILDNMGEQEQEQEDWKKYITGTDMLDMKLEDILESINSI
                     KSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLF
                     EDKRKSKT"
     misc_feature    422..985
                     /gene="TMED5"
                     /note="emp24/gp25L/p24 family/GOLD; Region: EMP24_GP25L;
                     pfam01105"
                     /db_xref="CDD:426051"
ORIGIN      
        1 accgccaaga cgcccattgg tgtgagggac gccatgagaa gctgcggccg tctgggtatc
       61 gagcgggcgc gctcacgcgg ggcctgaggg agccaagacc cgggagggtg tgaaaaagga
      121 ctgctggctc cgccctcagt ccctaccctt tgtaggccgg cgttttccct tctgagaaac
      181 gcccctccgc cccggccttc acctggagtt tcttcaggct ccaggtttcc ctgccaacca
      241 cgaggagtcc agggaggaaa agcggagcat aggcgcctat aacccacgcc tcccacgcct
      301 tttccagccc gagatcgccc aggcagggat gggcgacaag atctggctgc ccttcccggt
      361 ggtcctcttg gcctctcagc tgctgcctgg ggcggccggc ttcacgccct ccttagacag
      421 cgacttcacg ttcactcttc cggccggcca gaaggagtgt ttctaccagc ccatgcccct
      481 gaaggcctcg ctggagatcg agtaccaagt tttagatgga gcaggattag atattgattt
      541 ccatcttgcc tctccaaaag gaagaacctt agtttttgaa caaagaaaat cagatggagt
      601 tcacacgata gagactgaag gcggtgacta catgttctgc tttgataata cattcagcac
      661 catttctgag aaggtgattt tctttgaatt aatcctggat aatatgggag aacaggagca
      721 agaacaagag gactggaaga aatacattac tggcacagat atgttggata tgaaactgga
      781 agacattctg gagtccatca acagtatcaa gtccagacta agcaaaagtg gtcatatcca
      841 aactctgctt agagcatttg aagctcgtga tcgaaacata caagaaagca actttgatag
      901 agtaaatttc tggtctatgg ttaatttagt ggtaatggtg gtagtgtcag ccattcaagt
      961 atatatgctt aagagtctat ttgaagataa gaggaaaagt aaaacttaaa actccaaagt
     1021 agagtactta acattcaaaa aaaggggcag aaaaatgcaa taaactgtta cagtcaagac
     1081 cattaatagt tgtttgcaaa acgttttcag gcattaccat agtgtggaat aaatattaat
     1141 tttaacgtga gaggaaaggc ttcactttca tctgtgcaag taatcttatt gttccagttg
     1201 tacttaagtg tataacaagt atcttgcagg tataaatgaa tgaagccata ttaataacgg
     1261 cagtttccta cgtttgaaaa aattttgcaa atgtcatagg tgatttaaat aaatgaactt
     1321 tgggcctaaa tgtaacactg aactatgttt ttaaaagatt gttacccaga agtttctttg
     1381 taaatgtggc aattacaaat taactgtaga agtttttcaa tatattaagt tatgaatcat
     1441 ctgagaatta cctaatcatg gatatcttta gaagacaaag actcaacttt tctcttttta
     1501 catatgtatc tcctaaatgt aaatagaagc atagctgtga aaaagatatg tgggattttt
     1561 ataaccaaat atatttcatt ttaatagcaa atagttttat atacctagct tacattccca
     1621 aaagctgaca ttttgaataa ttcttaaaaa tgctaagtca tacttattaa aattaggaca
     1681 gattttctct ttgaagaata aagattgctc ccagtctcta taggaataca ttctgtctaa
     1741 tccttaacca aaatatagat ttaaaaatta aatgtgaggg aaaatcattt tatttttata
     1801 ttatcaacag tgttatgtta gttttaatgt gtttactgac ttggataata cattaatacc
     1861 agcagttgtg aaggaaatat tgctaaaagg atctggacct aatgtaagta aatatcactt
     1921 ttgtgttctc aaaatcagta agaaaagaat aaactcaata taaaagaatt tagagaatat
     1981 cctatcaaaa taaagttcac ttaaactata aagtatttgg aatctgattg gctcataatg
     2041 actcaatcct catataaatt atgagattaa tttccagtta actggaagaa actgggtttt
     2101 atttttttac aattgtttta ttctgttttg aattatcatt tataagtatt caggcacatt
     2161 ttacaaaaca taagccctac tgggtataaa ttttattttt attacaactt tcataaagtg
     2221 acctttctga tcactttatt tgacattcag ataaggattg gaaacccaca gaagtttaaa
     2281 cactcaatat gtgaataacc ctatagtctc tgccatcctg tcttactcaa gtactaataa
     2341 tttaatgaat taaatagaat ttttaggtta tacccatttg taatattgtt tatgacatat
     2401 acaagttaga aacaatcaac ttataaactt gagtgtagaa caacctctgt gggttggtac
     2461 tgctagaatt cttaataagc aataatgata tccagagaga atgctttcag ctataattta
     2521 cactcaagag tggtacaaaa agagatattt ccctccttct tatatatttc cctctattct
     2581 tcttcagaaa agaagtttag atttcccaac tctgaagctt tttaaaaatg agataaggta
     2641 ttattacctt aattggtcaa gaaaatgctc ctaagtgtcc aggagtagcc cctattaaca
     2701 catgcaaaac aagggccaat aagatttttg cctatgaata gccctccttt tttcccttct
     2761 gatacactca taataagaag caaacttaaa gtactatagc taataaaaca gtacagatat
     2821 aaactactgc atcttttcta taaaactgtg attaagaatt ctacctctta cgtatagctg
     2881 gttactgtac tgtactgatt ctttacctaa caataaattt gttacatcac cttctacata
     2941 tgatttgtgt cactgatttt aaaccactga ttcagtaact tactgtataa taacggcctt
     3001 atttagaaaa caaagaattt aagaatattg aggacaattt tatttttata gacaaagtga
     3061 aaagaagaga ttatttaaga agcatgttac ctgtattaac caaaaagtaa aatctgtaag
     3121 cacatttgta ctaaattctt taatatttct aacggaatat tgtttatctg cctcatatgg
     3181 tttttttaat gtcagtattg ttttgacatt aaaattatgc taaaactggg taagctattt
     3241 atcacttaac agcttatttt gtcttcagtt tttaatcata taaactttta aaatactaca
     3301 atatttaact gaggcctaga gtttcactat gatttgcatt tggatcatta atgattgcta
     3361 ttctttcatg tgaatgtcaa gatatagagg ataagtggtt gaaatagcac tgaaataaat
     3421 gataaactga aatgtaattt tatgctatgt atgtttatcc ttcttaagta ttattatgtc
     3481 ctaaaattga caataattga gtacctataa ttctgtgcct tcccaaagaa aattctttat
     3541 ctgaaatttt caaagatatt ggttcagcat gtaatggttt ttcagttgaa gtgtaataat
     3601 gcagtgttgc tcaaattgct ttataattat gaacagacac agccatatta aataagcatt
     3661 gaatactgtg ctgagtatat ataataaaaa ttacaatcaa agaatgtctt atttatctac
     3721 ca
//
LOCUS       XM_032603011            3806 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane p24 trafficking protein 5
            (TMED5), transcript variant X2, mRNA.
ACCESSION   XM_032603011
VERSION     XM_032603011.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3806
                     /gene="TMED5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 1 Protein, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116738985"
     CDS             545..1093
                     /gene="TMED5"
                     /codon_start=1
                     /product="transmembrane emp24 domain-containing protein 5
                     isoform X2"
                     /protein_id="XP_032458902.1"
                     /db_xref="GeneID:116738985"
                     /translation="MMTLGVNHPHHPHSIPVLDGAGLDIDFHLASPKGRTLVFEQRKS
                     DGVHTIETEGGDYMFCFDNTFSTISEKVIFFELILDNMGEQEQEQEDWKKYITGTDML
                     DMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMV
                     VVSAIQVYMLKSLFEDKRKSKT"
     misc_feature    593..1069
                     /gene="TMED5"
                     /note="emp24/gp25L/p24 family/GOLD; Region: EMP24_GP25L;
                     pfam01105"
                     /db_xref="CDD:426051"
ORIGIN      
        1 agaagctgcg gccgtctggg tatcgagcgg gcgcgctcac gcggggcctg agggagccaa
       61 gacccgggag ggtgtgaaaa aggactgctg gctccgccct cagtccctac cctttgtagg
      121 ccggcgtttt cccttctgag aaacgcccct ccgccccggc cttcacctgg agtttcttca
      181 ggctccaggt ttccctgcca accacgagga gtccagggag gaaaagcgga gcataggcgc
      241 ctataaccca cgcctcccac gccttttcca gcccgagatc gcccaggcag ggatgggcga
      301 caagatctgg ctgcccttcc cggtggtcct cttggcctct cagctgctgc ctggggcggc
      361 cggcttcacg ccctccttag acagcgactt cacgttcact cttccggccg gccagaagga
      421 gtgtttctac cagcccatgc ccctgaaggc ctcgctggag atcgagtacc aaccagtaca
      481 cgcttcaata ctgggaattt cacaatacag gcctaataca cgttctcctt aatcattgga
      541 cgagatgatg acacttggcg ttaatcaccc ccaccaccct cactcaattc cggttttaga
      601 tggagcagga ttagatattg atttccatct tgcctctcca aaaggaagaa ccttagtttt
      661 tgaacaaaga aaatcagatg gagttcacac gatagagact gaaggcggtg actacatgtt
      721 ctgctttgat aatacattca gcaccatttc tgagaaggtg attttctttg aattaatcct
      781 ggataatatg ggagaacagg agcaagaaca agaggactgg aagaaataca ttactggcac
      841 agatatgttg gatatgaaac tggaagacat tctggagtcc atcaacagta tcaagtccag
      901 actaagcaaa agtggtcata tccaaactct gcttagagca tttgaagctc gtgatcgaaa
      961 catacaagaa agcaactttg atagagtaaa tttctggtct atggttaatt tagtggtaat
     1021 ggtggtagtg tcagccattc aagtatatat gcttaagagt ctatttgaag ataagaggaa
     1081 aagtaaaact taaaactcca aagtagagta cttaacattc aaaaaaaggg gcagaaaaat
     1141 gcaataaact gttacagtca agaccattaa tagttgtttg caaaacgttt tcaggcatta
     1201 ccatagtgtg gaataaatat taattttaac gtgagaggaa aggcttcact ttcatctgtg
     1261 caagtaatct tattgttcca gttgtactta agtgtataac aagtatcttg caggtataaa
     1321 tgaatgaagc catattaata acggcagttt cctacgtttg aaaaaatttt gcaaatgtca
     1381 taggtgattt aaataaatga actttgggcc taaatgtaac actgaactat gtttttaaaa
     1441 gattgttacc cagaagtttc tttgtaaatg tggcaattac aaattaactg tagaagtttt
     1501 tcaatatatt aagttatgaa tcatctgaga attacctaat catggatatc tttagaagac
     1561 aaagactcaa cttttctctt tttacatatg tatctcctaa atgtaaatag aagcatagct
     1621 gtgaaaaaga tatgtgggat ttttataacc aaatatattt cattttaata gcaaatagtt
     1681 ttatatacct agcttacatt cccaaaagct gacattttga ataattctta aaaatgctaa
     1741 gtcatactta ttaaaattag gacagatttt ctctttgaag aataaagatt gctcccagtc
     1801 tctataggaa tacattctgt ctaatcctta accaaaatat agatttaaaa attaaatgtg
     1861 agggaaaatc attttatttt tatattatca acagtgttat gttagtttta atgtgtttac
     1921 tgacttggat aatacattaa taccagcagt tgtgaaggaa atattgctaa aaggatctgg
     1981 acctaatgta agtaaatatc acttttgtgt tctcaaaatc agtaagaaaa gaataaactc
     2041 aatataaaag aatttagaga atatcctatc aaaataaagt tcacttaaac tataaagtat
     2101 ttggaatctg attggctcat aatgactcaa tcctcatata aattatgaga ttaatttcca
     2161 gttaactgga agaaactggg ttttattttt ttacaattgt tttattctgt tttgaattat
     2221 catttataag tattcaggca cattttacaa aacataagcc ctactgggta taaattttat
     2281 ttttattaca actttcataa agtgaccttt ctgatcactt tatttgacat tcagataagg
     2341 attggaaacc cacagaagtt taaacactca atatgtgaat aaccctatag tctctgccat
     2401 cctgtcttac tcaagtacta ataatttaat gaattaaata gaatttttag gttataccca
     2461 tttgtaatat tgtttatgac atatacaagt tagaaacaat caacttataa acttgagtgt
     2521 agaacaacct ctgtgggttg gtactgctag aattcttaat aagcaataat gatatccaga
     2581 gagaatgctt tcagctataa tttacactca agagtggtac aaaaagagat atttccctcc
     2641 ttcttatata tttccctcta ttcttcttca gaaaagaagt ttagatttcc caactctgaa
     2701 gctttttaaa aatgagataa ggtattatta ccttaattgg tcaagaaaat gctcctaagt
     2761 gtccaggagt agcccctatt aacacatgca aaacaagggc caataagatt tttgcctatg
     2821 aatagccctc cttttttccc ttctgataca ctcataataa gaagcaaact taaagtacta
     2881 tagctaataa aacagtacag atataaacta ctgcatcttt tctataaaac tgtgattaag
     2941 aattctacct cttacgtata gctggttact gtactgtact gattctttac ctaacaataa
     3001 atttgttaca tcaccttcta catatgattt gtgtcactga ttttaaacca ctgattcagt
     3061 aacttactgt ataataacgg ccttatttag aaaacaaaga atttaagaat attgaggaca
     3121 attttatttt tatagacaaa gtgaaaagaa gagattattt aagaagcatg ttacctgtat
     3181 taaccaaaaa gtaaaatctg taagcacatt tgtactaaat tctttaatat ttctaacgga
     3241 atattgttta tctgcctcat atggtttttt taatgtcagt attgttttga cattaaaatt
     3301 atgctaaaac tgggtaagct atttatcact taacagctta ttttgtcttc agtttttaat
     3361 catataaact tttaaaatac tacaatattt aactgaggcc tagagtttca ctatgatttg
     3421 catttggatc attaatgatt gctattcttt catgtgaatg tcaagatata gaggataagt
     3481 ggttgaaata gcactgaaat aaatgataaa ctgaaatgta attttatgct atgtatgttt
     3541 atccttctta agtattatta tgtcctaaaa ttgacaataa ttgagtacct ataattctgt
     3601 gccttcccaa agaaaattct ttatctgaaa ttttcaaaga tattggttca gcatgtaatg
     3661 gtttttcagt tgaagtgtaa taatgcagtg ttgctcaaat tgctttataa ttatgaacag
     3721 acacagccat attaaataag cattgaatac tgtgctgagt atatataata aaaattacaa
     3781 tcaaagaatg tcttatttat ctacca
//
LOCUS       XM_032603020            1022 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane p24 trafficking protein 5
            (TMED5), transcript variant X3, mRNA.
ACCESSION   XM_032603020
VERSION     XM_032603020.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1022
                     /gene="TMED5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 90% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116738985"
     CDS             294..872
                     /gene="TMED5"
                     /codon_start=1
                     /product="transmembrane emp24 domain-containing protein 5
                     isoform X3"
                     /protein_id="XP_032458911.1"
                     /db_xref="GeneID:116738985"
                     /translation="MGDKIWLPFPVVLLASQLLPGAAGFTPSLDSDFTFTLPAGQKEC
                     FYQPMPLKASLEIEYQVLDGAGLDIDFHLASPKGRTLVFEQRKSDGVHTIETEGGDYM
                     FCFDNTFSTISEKVIFFELILDNMGEQEQEQEDWKKYITGTDMLDMKLEDILDPTIKI
                     VFSEDVQLRMHLGVHQQYQVQTKQKWSYPNSA"
     misc_feature    387..>758
                     /gene="TMED5"
                     /note="emp24/gp25L/p24 family/GOLD; Region: EMP24_GP25L;
                     pfam01105"
                     /db_xref="CDD:426051"
ORIGIN      
        1 gagaagctgc ggccgtctgg gtatcgagcg ggcgcgctca cgcggggcct gagggagcca
       61 agacccggga gggtgtgaaa aaggactgct ggctccgccc tcagtcccta ccctttgtag
      121 gccggcgttt tcccttctga gaaacgcccc tccgccccgg ccttcacctg gagtttcttc
      181 aggctccagg tttccctgcc aaccacgagg agtccaggga ggaaaagcgg agcataggcg
      241 cctataaccc acgcctccca cgccttttcc agcccgagat cgcccaggca gggatgggcg
      301 acaagatctg gctgcccttc ccggtggtcc tcttggcctc tcagctgctg cctggggcgg
      361 ccggcttcac gccctcctta gacagcgact tcacgttcac tcttccggcc ggccagaagg
      421 agtgtttcta ccagcccatg cccctgaagg cctcgctgga gatcgagtac caagttttag
      481 atggagcagg attagatatt gatttccatc ttgcctctcc aaaaggaaga accttagttt
      541 ttgaacaaag aaaatcagat ggagttcaca cgatagagac tgaaggcggt gactacatgt
      601 tctgctttga taatacattc agcaccattt ctgagaaggt gattttcttt gaattaatcc
      661 tggataatat gggagaacag gagcaagaac aagaggactg gaagaaatac attactggca
      721 cagatatgtt ggatatgaaa ctggaagaca ttctggaccc tactataaaa atagtttttt
      781 cagaagatgt gcaacttaga atgcatctag gagtccatca acagtatcaa gtccagacta
      841 agcaaaagtg gtcatatcca aactctgctt agagcatttg aagctcgtga tcgaaacata
      901 caagaaagca actttgatag agtaaatttc tggtctatgg ttaatttagt ggtaatggtg
      961 gtagtgtcag ccattcaagt atatatgctt aagagtctat ttgaagataa gaggaaaagt
     1021 aa
//
LOCUS       XM_032603030            2604 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chloride voltage-gated channel Ka
            (CLCNKA), transcript variant X1, mRNA.
ACCESSION   XM_032603030
VERSION     XM_032603030.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2604
                     /gene="CLCNKA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116738997"
     CDS             106..2169
                     /gene="CLCNKA"
                     /codon_start=1
                     /product="chloride channel protein ClC-Ka isoform X1"
                     /protein_id="XP_032458921.1"
                     /db_xref="GeneID:116738997"
                     /translation="MEELVGLREGSSGNPVTLQELWGPCPRIRRGIRGGLEWLKQKLF
                     RMGEDWYFLMTLGVLMALISYTMSFTVGRVVRAHKWLYREIGDSHLLRYLSWTVYPVA
                     LVSFSSGFSQSITPFSGGSGIPELKTILSGVVLEDYLDIKNFGAKVVGLTCTLATGST
                     IFLGKVGPFVHLSVMIAAYLGRLRTKAIGESENKSKQNEMLVAAAAVGVATVFAAPFS
                     GVLFSIEVMSSHFSVWDYWRGFFAATCGAFMFRLLAVFNSEQETITSLYKTSFRVDVP
                     FDLPEIFFFVALGAICGILSCAYLFCQRTFLGFVKTNRVLSKLLATSKPLYSALAALV
                     LASITYPPGVGRFMASRLSMREHLDSLFDNNSWALMTWNSSPPWPSEPDPQNLWFEWY
                     HPQFTIFGTLAFFLVMKFWMIILATTIPMPAGYFMPIFIFGAAIGRLIGEALCVAFPE
                     GIVAGGVTNPIMPGGYALAGAAAFSGAVTHTISTALLAFELTGQIVHALPVLMAVLAA
                     NAIAQSCQPSFYDGTIIVKKLPYLPWIRCRKISSHHVIVEHFMNCTITTLAKDTPQEE
                     VVKVVTSTDTAKYPLVESTESQILVGTVQRAHLVQALQAEPPSRVPGHQQCLQDILAG
                     GCPVEPVTLKLSPETSLHQAHNLFELLNLQSLFVTSQGRAVGFVSWVELKKAISNLTN
                     PPAPK"
     misc_feature    250..1704
                     /gene="CLCNKA"
                     /note="ClC-1-like chloride channel proteins. This CD
                     includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is
                     expressed in skeletal muscle and its mutation leads to
                     both recessively and dominantly-inherited forms of muscle
                     stiffness or myotonia. ClC-K is...; Region: ClC_1_like;
                     cd03683"
                     /db_xref="CDD:239655"
     misc_feature    order(463..477,595..609,1375..1389,1663..1665)
                     /gene="CLCNKA"
                     /note="putative Cl- selectivity filter [active]"
                     /db_xref="CDD:239655"
     misc_feature    601..603
                     /gene="CLCNKA"
                     /note="putative pore gating glutamate residue [active]"
                     /db_xref="CDD:239655"
     misc_feature    1741..2133
                     /gene="CLCNKA"
                     /note="Two tandem repeats of the cystathionine
                     beta-synthase (CBS pair) domains associated with the
                     voltage gated CLC (chloride channel) in eukaryotes and
                     bacteria; Region: CBS_pair_voltage-gated_CLC_euk_bac;
                     cd04591"
                     /db_xref="CDD:341367"
     misc_feature    order(1759..1761,1765..1773,1837..1845,2068..2070,
                     2104..2106,2110..2112,2116..2121,2128..2130)
                     /gene="CLCNKA"
                     /note="ligand binding site II [chemical binding]; other
                     site"
                     /db_xref="CDD:341367"
     misc_feature    1759..1986
                     /gene="CLCNKA"
                     /note="CBS repeat [structural motif]; Region: CBS repeat"
                     /db_xref="CDD:341367"
     misc_feature    order(1837..1839,1882..1884,1894..1899,1906..1908,
                     2002..2004,2068..2076,2116..2118)
                     /gene="CLCNKA"
                     /note="putative ligand binding site I [chemical binding];
                     other site"
                     /db_xref="CDD:341367"
     misc_feature    2002..2130
                     /gene="CLCNKA"
                     /note="CBS repeat [structural motif]; Region: CBS repeat"
                     /db_xref="CDD:341367"
ORIGIN      
        1 gtggaacaca cacctgtcca ggtgcacctg agctgcaagc aaaggagtct ctgtcagagg
       61 agggctggct ggggccacag cagagcggac tgacaaaggg gcctgatgga ggagctggta
      121 gggcttcgtg agggctcctc ggggaatcct gtgacacttc aggagctatg gggcccgtgt
      181 ccccgcatcc gccgaggcat ccgaggtggc ctcgagtggt tgaagcagaa gctgttccgc
      241 atgggtgagg actggtactt cctgatgacc ctcggggtgc tcatggccct gatcagctac
      301 accatgagct tcactgttgg ccgtgtggtc cgagcacaca agtggctgta ccgggagatt
      361 ggggacagcc acctactccg gtatctctcc tggaccgtgt accccgtggc cctggtctcc
      421 ttctcctcag gcttttccca gagcatcacg cccttctcgg gaggttctgg aattccggag
      481 ctgaagacca tcctgtcggg cgtggtcttg gaggactacc tggatatcaa gaacttcggg
      541 gccaaggtgg tgggcctcac ctgcaccctg gccacgggca gcaccatctt cctgggcaaa
      601 gtgggcccct tcgtgcacct gtctgtgatg atcgctgcct acctgggccg cctgcgcacc
      661 aaggccattg gggagtctga gaacaagagc aagcaaaacg aaatgctggt ggcggcagcg
      721 gcagtgggcg tggccacagt gttcgcagcg cccttcagtg gcgtcctgtt cagcatcgag
      781 gtcatgtcct cccacttctc ggtctgggat tactggaggg gcttcttcgc tgccacctgt
      841 ggggccttca tgttccgcct cctggctgtc ttcaacagcg agcaggagac catcacctcc
      901 ctctacaaga ccagtttccg ggtagacgtc ccctttgacc tgccagagat cttctttttt
      961 gtggcgctgg gggccatctg tggcatcctg agctgtgctt acctcttctg tcagcgaacg
     1021 ttcctcggct ttgtcaagac caatcgggtc ctctccaaac tgctggccac cagcaagcct
     1081 ctgtattccg ctctggcggc cttggttctc gcctccatca cctatccccc tggcgtgggc
     1141 cgcttcatgg cttctcggct gtccatgagg gagcatctgg actcactgtt cgacaataac
     1201 tcgtgggcgc tgatgacctg gaactcgtcc ccaccctggc cctcggagcc cgacccacag
     1261 aacctatggt tcgaatggta ccacccgcag ttcaccatct ttgggaccct cgccttcttc
     1321 ctggttatga agttctggat gataattctg gccaccacaa tccccatgcc cgctgggtac
     1381 ttcatgccca tatttatctt cggagctgcc atcggacgcc tcatagggga ggccctctgt
     1441 gttgccttcc cagagggcat cgtggctgga ggtgtcacca accccatcat gcctgggggg
     1501 tatgccctgg caggggctgc ggctttctca ggggctgtga cccacaccat ctccacagca
     1561 ttgctggcct tcgagctgac cggccagatt gtgcacgcac tacctgtgct gatggcggtg
     1621 ctggcggcca acgccatcgc ccagagctgc cagccttcct tctatgacgg caccatcatt
     1681 gtcaagaaac tgccatacct tccgtggatc cggtgccgaa aaatcagctc tcaccatgta
     1741 attgtggagc acttcatgaa ctgtaccatc accacgctgg ccaaggacac accgcaggag
     1801 gaggtggtca aggtcgtgac ctccacagac actgccaagt accccctggt ggagagcaca
     1861 gagtctcaga tactggtggg caccgtgcaa agggcacacc tagtgcaggc cctccaggct
     1921 gagccaccct cccgggttcc aggacaccag cagtgtctgc aggacatctt ggctgggggc
     1981 tgccccgtgg aaccagtgac cctgaagctg tccccggaga cctctctgca ccaggcacac
     2041 aacctcttcg agctgttgaa ccttcagtcc ctcttcgtga cgtctcaggg cagagctgtg
     2101 ggcttcgtgt cttgggtgga gttgaagaaa gcaatttcca acctgacaaa ccctccggcc
     2161 ccaaagtgag ccagcctggc aagatgaaac agggcccctc agctgccctg gtgaaggaga
     2221 tggggcagag accctgcctt tctccccccc cccccccccc gccatcataa cgcacccctc
     2281 ccctccagcc cagctcaact cctcggagaa gtaggcagct aagctagcac tgaagaggcc
     2341 ccatagtcac cacgtcctat tctccatgaa acaagtgcta cctgccttga aggacaaatc
     2401 cccctctgga cagaactcag aatgcaagac agcagaaaac cagcatatgg tgggtgctcc
     2461 atgaaagaat caaattcacg aatgaagaca ttgggatatt ctgtcgccaa gggcacgcag
     2521 agatgccctc tgagggttgt atgactccca accggaggtt cctgagaaaa aataaagctg
     2581 attgccagag ccgtctgtcc ctca
//
LOCUS       XM_032603041            2601 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chloride voltage-gated channel Ka
            (CLCNKA), transcript variant X2, mRNA.
ACCESSION   XM_032603041
VERSION     XM_032603041.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2601
                     /gene="CLCNKA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116738997"
     CDS             106..2166
                     /gene="CLCNKA"
                     /codon_start=1
                     /product="chloride channel protein ClC-Ka isoform X2"
                     /protein_id="XP_032458932.1"
                     /db_xref="GeneID:116738997"
                     /translation="MEELVGLREGSSGNPVTLQELWGPCPRIRRGIRGGLEWLKQKLF
                     RMGEDWYFLMTLGVLMALISYTMSFTVGRVVRAHKWLYREIGDSHLLRYLSWTVYPVA
                     LVSFSSGFSQSITPFSGGSGIPELKTILSGVVLEDYLDIKNFGAKVVGLTCTLATGST
                     IFLGKVGPFVHLSVMIAAYLGRLRTKAIGESENKSKQNEMLVAAAAVGVATVFAAPFS
                     GVLFSIEVMSSHFSVWDYWRGFFAATCGAFMFRLLAVFNSEQETITSLYKTSFRVDVP
                     FDLPEIFFFVALGAICGILSCAYLFCQRTFLGFVKTNRVLSKLLATSKPLYSALAALV
                     LASITYPPGVGRFMASRLSMREHLDSLFDNNSWALMTWNSSPPWPSEPDPQNLWFEWY
                     HPQFTIFGTLAFFLVMKFWMIILATTIPMPAGYFMPIFIFGAAIGRLIGEALCVAFPE
                     GIVAGGVTNPIMPGGYALAGAAAFSGAVTHTISTALLAFELTGQIVHALPVLMAVLAA
                     NAIAQSCQPSFYDGTIIVKKLPYLPWIRCRKISSHHVIVEHFMNCTITTLAKDTPQEE
                     VVKVVTSTDTAKYPLVESTESQILVGTVQRAHLVQALQAEPPSRVPGHQCLQDILAGG
                     CPVEPVTLKLSPETSLHQAHNLFELLNLQSLFVTSQGRAVGFVSWVELKKAISNLTNP
                     PAPK"
     misc_feature    250..1704
                     /gene="CLCNKA"
                     /note="ClC-1-like chloride channel proteins. This CD
                     includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is
                     expressed in skeletal muscle and its mutation leads to
                     both recessively and dominantly-inherited forms of muscle
                     stiffness or myotonia. ClC-K is...; Region: ClC_1_like;
                     cd03683"
                     /db_xref="CDD:239655"
     misc_feature    order(463..477,595..609,1375..1389,1663..1665)
                     /gene="CLCNKA"
                     /note="putative Cl- selectivity filter [active]"
                     /db_xref="CDD:239655"
     misc_feature    601..603
                     /gene="CLCNKA"
                     /note="putative pore gating glutamate residue [active]"
                     /db_xref="CDD:239655"
     misc_feature    1741..2130
                     /gene="CLCNKA"
                     /note="Two tandem repeats of the cystathionine
                     beta-synthase (CBS pair) domains associated with the
                     voltage gated CLC (chloride channel) in eukaryotes and
                     bacteria; Region: CBS_pair_voltage-gated_CLC_euk_bac;
                     cd04591"
                     /db_xref="CDD:341367"
     misc_feature    order(1759..1761,1765..1773,1837..1845,2065..2067,
                     2101..2103,2107..2109,2113..2118,2125..2127)
                     /gene="CLCNKA"
                     /note="ligand binding site II [chemical binding]; other
                     site"
                     /db_xref="CDD:341367"
     misc_feature    1759..1983
                     /gene="CLCNKA"
                     /note="CBS repeat [structural motif]; Region: CBS repeat"
                     /db_xref="CDD:341367"
     misc_feature    order(1837..1839,1882..1884,1894..1899,1906..1908,
                     1999..2001,2065..2073,2113..2115)
                     /gene="CLCNKA"
                     /note="putative ligand binding site I [chemical binding];
                     other site"
                     /db_xref="CDD:341367"
     misc_feature    1999..2127
                     /gene="CLCNKA"
                     /note="CBS repeat [structural motif]; Region: CBS repeat"
                     /db_xref="CDD:341367"
ORIGIN      
        1 gtggaacaca cacctgtcca ggtgcacctg agctgcaagc aaaggagtct ctgtcagagg
       61 agggctggct ggggccacag cagagcggac tgacaaaggg gcctgatgga ggagctggta
      121 gggcttcgtg agggctcctc ggggaatcct gtgacacttc aggagctatg gggcccgtgt
      181 ccccgcatcc gccgaggcat ccgaggtggc ctcgagtggt tgaagcagaa gctgttccgc
      241 atgggtgagg actggtactt cctgatgacc ctcggggtgc tcatggccct gatcagctac
      301 accatgagct tcactgttgg ccgtgtggtc cgagcacaca agtggctgta ccgggagatt
      361 ggggacagcc acctactccg gtatctctcc tggaccgtgt accccgtggc cctggtctcc
      421 ttctcctcag gcttttccca gagcatcacg cccttctcgg gaggttctgg aattccggag
      481 ctgaagacca tcctgtcggg cgtggtcttg gaggactacc tggatatcaa gaacttcggg
      541 gccaaggtgg tgggcctcac ctgcaccctg gccacgggca gcaccatctt cctgggcaaa
      601 gtgggcccct tcgtgcacct gtctgtgatg atcgctgcct acctgggccg cctgcgcacc
      661 aaggccattg gggagtctga gaacaagagc aagcaaaacg aaatgctggt ggcggcagcg
      721 gcagtgggcg tggccacagt gttcgcagcg cccttcagtg gcgtcctgtt cagcatcgag
      781 gtcatgtcct cccacttctc ggtctgggat tactggaggg gcttcttcgc tgccacctgt
      841 ggggccttca tgttccgcct cctggctgtc ttcaacagcg agcaggagac catcacctcc
      901 ctctacaaga ccagtttccg ggtagacgtc ccctttgacc tgccagagat cttctttttt
      961 gtggcgctgg gggccatctg tggcatcctg agctgtgctt acctcttctg tcagcgaacg
     1021 ttcctcggct ttgtcaagac caatcgggtc ctctccaaac tgctggccac cagcaagcct
     1081 ctgtattccg ctctggcggc cttggttctc gcctccatca cctatccccc tggcgtgggc
     1141 cgcttcatgg cttctcggct gtccatgagg gagcatctgg actcactgtt cgacaataac
     1201 tcgtgggcgc tgatgacctg gaactcgtcc ccaccctggc cctcggagcc cgacccacag
     1261 aacctatggt tcgaatggta ccacccgcag ttcaccatct ttgggaccct cgccttcttc
     1321 ctggttatga agttctggat gataattctg gccaccacaa tccccatgcc cgctgggtac
     1381 ttcatgccca tatttatctt cggagctgcc atcggacgcc tcatagggga ggccctctgt
     1441 gttgccttcc cagagggcat cgtggctgga ggtgtcacca accccatcat gcctgggggg
     1501 tatgccctgg caggggctgc ggctttctca ggggctgtga cccacaccat ctccacagca
     1561 ttgctggcct tcgagctgac cggccagatt gtgcacgcac tacctgtgct gatggcggtg
     1621 ctggcggcca acgccatcgc ccagagctgc cagccttcct tctatgacgg caccatcatt
     1681 gtcaagaaac tgccatacct tccgtggatc cggtgccgaa aaatcagctc tcaccatgta
     1741 attgtggagc acttcatgaa ctgtaccatc accacgctgg ccaaggacac accgcaggag
     1801 gaggtggtca aggtcgtgac ctccacagac actgccaagt accccctggt ggagagcaca
     1861 gagtctcaga tactggtggg caccgtgcaa agggcacacc tagtgcaggc cctccaggct
     1921 gagccaccct cccgggttcc aggacaccag tgtctgcagg acatcttggc tgggggctgc
     1981 cccgtggaac cagtgaccct gaagctgtcc ccggagacct ctctgcacca ggcacacaac
     2041 ctcttcgagc tgttgaacct tcagtccctc ttcgtgacgt ctcagggcag agctgtgggc
     2101 ttcgtgtctt gggtggagtt gaagaaagca atttccaacc tgacaaaccc tccggcccca
     2161 aagtgagcca gcctggcaag atgaaacagg gcccctcagc tgccctggtg aaggagatgg
     2221 ggcagagacc ctgcctttct cccccccccc cccccccgcc atcataacgc acccctcccc
     2281 tccagcccag ctcaactcct cggagaagta ggcagctaag ctagcactga agaggcccca
     2341 tagtcaccac gtcctattct ccatgaaaca agtgctacct gccttgaagg acaaatcccc
     2401 ctctggacag aactcagaat gcaagacagc agaaaaccag catatggtgg gtgctccatg
     2461 aaagaatcaa attcacgaat gaagacattg ggatattctg tcgccaaggg cacgcagaga
     2521 tgccctctga gggttgtatg actcccaacc ggaggttcct gagaaaaaat aaagctgatt
     2581 gccagagccg tctgtccctc a
//
LOCUS       XM_032603045            2559 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chloride voltage-gated channel Ka
            (CLCNKA), transcript variant X3, mRNA.
ACCESSION   XM_032603045
VERSION     XM_032603045.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2559
                     /gene="CLCNKA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116738997"
     CDS             106..2124
                     /gene="CLCNKA"
                     /codon_start=1
                     /product="chloride channel protein ClC-Ka isoform X3"
                     /protein_id="XP_032458936.1"
                     /db_xref="GeneID:116738997"
                     /translation="MEELVGLREGSSGNPVTLQELWGPCPRIRRGIRGGLEWLKQKLF
                     RMGEDWYFLMTLGVLMALISYTMSFTVGRVVRAHKWLYREIGDSHLLRYLSWTVYPVA
                     LVSFSSGFSQSITPFSGGSGIPELKTILSGVVLEDYLDIKNFGAKVVGLTCTLATGST
                     IFLGKVGPFVHLSVMIAAYLGRLRTKAIGESENKSKQNEMLVAAAAVGVATVFAAPFS
                     GVLFSIEVMSSHFSVWDYWRGFFAATCGAFMFRLLAVFNSEQETITSLYKTSFRVDVP
                     FDLPEIFFFVALGAICGILSCAYLFCQRTFLGFVKTNRVLSKLLATSKPLYSALAALV
                     LASITYPPGVGRFMASRLSMREHLDSLFDNNSWALMTWNSSPPWPSEPDPQNLWFEWY
                     HPQFTIFGTLAFFLVMKFWMIILATTIPMPAGYFMPIFIFGAAIGRLIGEALCVAFPE
                     GIVAGGVTNPIMPGGYALAALLAFELTGQIVHALPVLMAVLAANAIAQSCQPSFYDGT
                     IIVKKLPYLPWIRCRKISSHHVIVEHFMNCTITTLAKDTPQEEVVKVVTSTDTAKYPL
                     VESTESQILVGTVQRAHLVQALQAEPPSRVPGHQQCLQDILAGGCPVEPVTLKLSPET
                     SLHQAHNLFELLNLQSLFVTSQGRAVGFVSWVELKKAISNLTNPPAPK"
     misc_feature    250..1659
                     /gene="CLCNKA"
                     /note="ClC-1-like chloride channel proteins. This CD
                     includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is
                     expressed in skeletal muscle and its mutation leads to
                     both recessively and dominantly-inherited forms of muscle
                     stiffness or myotonia. ClC-K is...; Region: ClC_1_like;
                     cd03683"
                     /db_xref="CDD:239655"
     misc_feature    order(463..477,595..609,1375..1389,1618..1620)
                     /gene="CLCNKA"
                     /note="putative Cl- selectivity filter [active]"
                     /db_xref="CDD:239655"
     misc_feature    601..603
                     /gene="CLCNKA"
                     /note="putative pore gating glutamate residue [active]"
                     /db_xref="CDD:239655"
     misc_feature    1696..2088
                     /gene="CLCNKA"
                     /note="Two tandem repeats of the cystathionine
                     beta-synthase (CBS pair) domains associated with the
                     voltage gated CLC (chloride channel) in eukaryotes and
                     bacteria; Region: CBS_pair_voltage-gated_CLC_euk_bac;
                     cd04591"
                     /db_xref="CDD:341367"
     misc_feature    order(1714..1716,1720..1728,1792..1800,2023..2025,
                     2059..2061,2065..2067,2071..2076,2083..2085)
                     /gene="CLCNKA"
                     /note="ligand binding site II [chemical binding]; other
                     site"
                     /db_xref="CDD:341367"
     misc_feature    1714..1941
                     /gene="CLCNKA"
                     /note="CBS repeat [structural motif]; Region: CBS repeat"
                     /db_xref="CDD:341367"
     misc_feature    order(1792..1794,1837..1839,1849..1854,1861..1863,
                     1957..1959,2023..2031,2071..2073)
                     /gene="CLCNKA"
                     /note="putative ligand binding site I [chemical binding];
                     other site"
                     /db_xref="CDD:341367"
     misc_feature    1957..2085
                     /gene="CLCNKA"
                     /note="CBS repeat [structural motif]; Region: CBS repeat"
                     /db_xref="CDD:341367"
ORIGIN      
        1 gtggaacaca cacctgtcca ggtgcacctg agctgcaagc aaaggagtct ctgtcagagg
       61 agggctggct ggggccacag cagagcggac tgacaaaggg gcctgatgga ggagctggta
      121 gggcttcgtg agggctcctc ggggaatcct gtgacacttc aggagctatg gggcccgtgt
      181 ccccgcatcc gccgaggcat ccgaggtggc ctcgagtggt tgaagcagaa gctgttccgc
      241 atgggtgagg actggtactt cctgatgacc ctcggggtgc tcatggccct gatcagctac
      301 accatgagct tcactgttgg ccgtgtggtc cgagcacaca agtggctgta ccgggagatt
      361 ggggacagcc acctactccg gtatctctcc tggaccgtgt accccgtggc cctggtctcc
      421 ttctcctcag gcttttccca gagcatcacg cccttctcgg gaggttctgg aattccggag
      481 ctgaagacca tcctgtcggg cgtggtcttg gaggactacc tggatatcaa gaacttcggg
      541 gccaaggtgg tgggcctcac ctgcaccctg gccacgggca gcaccatctt cctgggcaaa
      601 gtgggcccct tcgtgcacct gtctgtgatg atcgctgcct acctgggccg cctgcgcacc
      661 aaggccattg gggagtctga gaacaagagc aagcaaaacg aaatgctggt ggcggcagcg
      721 gcagtgggcg tggccacagt gttcgcagcg cccttcagtg gcgtcctgtt cagcatcgag
      781 gtcatgtcct cccacttctc ggtctgggat tactggaggg gcttcttcgc tgccacctgt
      841 ggggccttca tgttccgcct cctggctgtc ttcaacagcg agcaggagac catcacctcc
      901 ctctacaaga ccagtttccg ggtagacgtc ccctttgacc tgccagagat cttctttttt
      961 gtggcgctgg gggccatctg tggcatcctg agctgtgctt acctcttctg tcagcgaacg
     1021 ttcctcggct ttgtcaagac caatcgggtc ctctccaaac tgctggccac cagcaagcct
     1081 ctgtattccg ctctggcggc cttggttctc gcctccatca cctatccccc tggcgtgggc
     1141 cgcttcatgg cttctcggct gtccatgagg gagcatctgg actcactgtt cgacaataac
     1201 tcgtgggcgc tgatgacctg gaactcgtcc ccaccctggc cctcggagcc cgacccacag
     1261 aacctatggt tcgaatggta ccacccgcag ttcaccatct ttgggaccct cgccttcttc
     1321 ctggttatga agttctggat gataattctg gccaccacaa tccccatgcc cgctgggtac
     1381 ttcatgccca tatttatctt cggagctgcc atcggacgcc tcatagggga ggccctctgt
     1441 gttgccttcc cagagggcat cgtggctgga ggtgtcacca accccatcat gcctgggggg
     1501 tatgccctgg cagcattgct ggccttcgag ctgaccggcc agattgtgca cgcactacct
     1561 gtgctgatgg cggtgctggc ggccaacgcc atcgcccaga gctgccagcc ttccttctat
     1621 gacggcacca tcattgtcaa gaaactgcca taccttccgt ggatccggtg ccgaaaaatc
     1681 agctctcacc atgtaattgt ggagcacttc atgaactgta ccatcaccac gctggccaag
     1741 gacacaccgc aggaggaggt ggtcaaggtc gtgacctcca cagacactgc caagtacccc
     1801 ctggtggaga gcacagagtc tcagatactg gtgggcaccg tgcaaagggc acacctagtg
     1861 caggccctcc aggctgagcc accctcccgg gttccaggac accagcagtg tctgcaggac
     1921 atcttggctg ggggctgccc cgtggaacca gtgaccctga agctgtcccc ggagacctct
     1981 ctgcaccagg cacacaacct cttcgagctg ttgaaccttc agtccctctt cgtgacgtct
     2041 cagggcagag ctgtgggctt cgtgtcttgg gtggagttga agaaagcaat ttccaacctg
     2101 acaaaccctc cggccccaaa gtgagccagc ctggcaagat gaaacagggc ccctcagctg
     2161 ccctggtgaa ggagatgggg cagagaccct gcctttctcc cccccccccc cccccgccat
     2221 cataacgcac ccctcccctc cagcccagct caactcctcg gagaagtagg cagctaagct
     2281 agcactgaag aggccccata gtcaccacgt cctattctcc atgaaacaag tgctacctgc
     2341 cttgaaggac aaatccccct ctggacagaa ctcagaatgc aagacagcag aaaaccagca
     2401 tatggtgggt gctccatgaa agaatcaaat tcacgaatga agacattggg atattctgtc
     2461 gccaagggca cgcagagatg ccctctgagg gttgtatgac tcccaaccgg aggttcctga
     2521 gaaaaaataa agctgattgc cagagccgtc tgtccctca
//
LOCUS       XM_032603051            2594 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus signal recognition particle 9 (SRP9),
            mRNA.
ACCESSION   XM_032603051
VERSION     XM_032603051.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2594
                     /gene="SRP9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 11 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739015"
     CDS             125..385
                     /gene="SRP9"
                     /codon_start=1
                     /product="signal recognition particle 9 kDa protein"
                     /protein_id="XP_032458942.1"
                     /db_xref="GeneID:116739015"
                     /translation="MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTD
                     DLVCLVYRTDQAQDVKKIEKFHSQLMRLMVAKESRSVAMETD"
     misc_feature    134..343
                     /gene="SRP9"
                     /note="Signal recognition particle 9 kDa protein (SRP9);
                     Region: SRP9-21; pfam05486"
                     /db_xref="CDD:428490"
ORIGIN      
        1 tcgttgagcg gctgggtctc tgccgcagta ggtggctgcg agaggtaggg aggtcggtgg
       61 gacgcgtcgc gtcgcctcag gtccgtagct ttgcctccct ttcctgttct gccgcgggcc
      121 cacgatgccg cagtaccaga cctgggagga gttcagtcgc gcagcggaga agctctacct
      181 cgcagaccct atgaaggcac gtgtggttct caaatatagg cattctgatg ggagtttgtg
      241 tattaaagta acagatgatt tagtttgttt ggtgtataga acagaccaag ctcaagatgt
      301 aaagaagatt gagaaattcc acagtcaact aatgcgactt atggtggcca aggaatcccg
      361 cagtgttgcc atggaaacag actgaatggt ttgaaatgaa gactgtcatg ttcctaggaa
      421 gtaaatatct tttgaatttg agaaagtgtt gggacagaaa atacttcatg taactaagtg
      481 ggctattcag aagccaagag atcatttttt gtactttgtt ttttaatgtt tactttagag
      541 agctaggact gtaaatgctt tcagttagaa aacttttatt tatttttgga aatggaacaa
      601 ggaatggctc tatcttggaa actttttgca gattgtttga tgttaggcaa aataaataat
      661 tactctctgg taagtttgta tcagtaattt gaaaatgaga tatcgagaaa agccaattct
      721 tccttaaatt tagttaatat gtctttaaaa gaaaaattaa atggaaccat tttgctggat
      781 tgatatattt cttttggagc ataaattttg tgctgttgat gaccagcaaa tataaaatac
      841 ggtaactgga attaactgtg cacagcagta tagctgatta tatatggtag tgtagtctaa
      901 ttatatctaa agataactat gaaaacaagt atgctttacc ttaaacttta caaatttaaa
      961 ctatattttt aaatataagg gattcatagt atcattaact tgttgagcaa agactaactt
     1021 tgaatctaat tttcatgccc agaaacatct gctgttactt taaatgcatg aacagaatgc
     1081 tcactagtgg atcgaaacca ccatattaca ggaatatttg ccacatattt gccatctata
     1141 ttttctcaga agggctaagg attatttgaa ctcttaaatt tttgcatacc tctctgacac
     1201 cccaagccat ttctctcatt acttaaccaa ggtgttaagc atgactctca caactgttct
     1261 ccattaaatc agaagtatga tattatttga tatttatctt acatttgtaa cctgagtttt
     1321 accacctgaa tataatgttc acatgttggt tcttacatta aaatattttt tgttaggaat
     1381 ttgttgtgtt gaccagcatt ttaacatgga aagttccatt agccatatga attttggcgt
     1441 gtttcagaga gatcagtaaa taaaatatta catgaagata tattgtttct ctttaagttt
     1501 ttaacttctc aagaattact tatttcttga ctgggatatt ctatatttat ttagactaaa
     1561 gtgagcctaa tgatactata tatacatttt tatttatttt gtttcttggt acttttatta
     1621 tatgactttc tctgagctgt atgctatggc attttgtttt cttgattaag aaaagtaaca
     1681 ttagggcttc cctggtggcg cagtggttga gagtccgcct accgatgcag gggacgtgag
     1741 ttcgtgcccc ggtccgggaa gatctcacat gccgtggagc ggctaggccc gtgagccatg
     1801 gccgctgagc ctgcgtgtcc ggagcctgtg ctccacaacc ggagaggcca caacagtgag
     1861 aggcctgcgt accgcaaaaa aagaaaagaa aagaaaagaa aagtaacatc aaatagtata
     1921 gggttttttg ggttttggta ttttcccccc atagtaggat aaccagaggg ttttttggcc
     1981 tttttctttt tcatttacat ctttcacttt ttaacactat tttatgaaga taaccgggaa
     2041 tgggggggga cttctgtttg agttctttga gtccctgtag cttgcagccg tgattaagag
     2101 caggggttcc aaggcagact gcctgcattg caatcttggc tccactgttc cccaattctg
     2161 tggcttttga gacagtactt ctctaagcct ccattttctt ctctggaaat tgggctgaca
     2221 gtagtattca tagggctttg aggattaaat ggcataatcc cctttaagcc cttagcacag
     2281 tacctggaac acagtaaagc tcaataaacg gtagctatta ttactattat tgttatgatt
     2341 gttatttttc gggggactgg gtataagtag ctagctctta agttttctca taattgtaat
     2401 tgaatagtta cttataagta acgtttgcct tttctaccga gctatgtcta ttatcaaatg
     2461 ccatttttgg caggtgaggt aaaacaagat tgtccccatg gggagtgttc ttatgtggtg
     2521 ggggaaactg aaatccttaa atctaaaaca tgtttatttg tatctacaca aaataaaatt
     2581 attaagagaa ctaa
//
LOCUS       XM_032603064            4164 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc metallopeptidase STE24 (ZMPSTE24),
            mRNA.
ACCESSION   XM_032603064
VERSION     XM_032603064.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4164
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4164
                     /gene="ZMPSTE24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 long SRA reads, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739019"
     CDS             84..1505
                     /gene="ZMPSTE24"
                     /codon_start=1
                     /product="CAAX prenyl protease 1 homolog"
                     /protein_id="XP_032458955.1"
                     /db_xref="GeneID:116739019"
                     /translation="MGMWASLDAMWDMSAEKRIFGAVLLFSWTVYLWETFLARRQRRI
                     YKTTTHVPLELGQIMDSETFEKSRLYQLDKSTFSFWSGLYSEVEGTLILLFGGIPYLW
                     RLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALTGLPWSLYNTFVIEEKHGFNQQTL
                     GFFMKDAIKKFIVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADY
                     IAPLFDKFTPLPEGKLKQEIEVMAKSIDFPLTKVYVVQGSKRSSHSNAYFYGFFKNKR
                     IVLFDTLLEEYSVLNKDIQEESGMEPCNDGEGDCEEIKAKNKKQGCKNEEVLAVLGHE
                     LGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFVAFGFYDSQPTLIGLLIIFQF
                     IFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKDLYSALIKLNKDNLGFPVSDWLF
                     SMWHYSHPPLLERLQALKNSKQD"
     misc_feature    147..1490
                     /gene="ZMPSTE24"
                     /note="Peptidase M48 subfamily A, a type 1 CaaX
                     endopeptidase; Region: M48A_Zmpste24p_like; cd07343"
                     /db_xref="CDD:320702"
     misc_feature    order(1080..1085,1092..1094,1320..1322,1332..1334,
                     1452..1454)
                     /gene="ZMPSTE24"
                     /note="active site"
                     /db_xref="CDD:320702"
     misc_feature    order(1080..1082,1092..1094,1320..1322,1452..1454)
                     /gene="ZMPSTE24"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:320702"
ORIGIN      
        1 gtgacactgc ggggatgctc tgaggggacg ggtgtcggtg tggcaccagt gctcgctgaa
       61 ggagccggcg gaacggggtg gtcatgggga tgtgggcgtc gctggacgcg atgtgggaca
      121 tgtcggccga gaagcgtatc ttcggggccg tgttgctctt ctcctggaca gtgtatctct
      181 gggagacctt cctagcacgg cggcagagac ggatatataa aacaacaact catgtaccac
      241 tggagttagg acagatcatg gattcagaaa catttgagaa atctcgactg tatcagctgg
      301 ataaaagtac tttcagcttc tggtcaggac tctattcaga ggttgaaggc actcttattc
      361 ttctctttgg aggaatccct tatctctgga gactctctgg gcggttctgt ggctatgctg
      421 gctttggacc agaatatgag atcactcagt ccttggtgtt tctgctgttg gctacacttt
      481 tcagtgcatt gactggtttg ccgtggagtc tttataatac ttttgtgata gaagaaaaac
      541 atggtttcaa tcagcagact ttggggttct tcatgaaaga tgcaatcaag aaatttattg
      601 tgactcagtg cattttatta cctgtgtctt cacttctact ttacattatt aaaattgggg
      661 gagactattt ttttatttat gcctggctgt tcacactagt tgtgtctctg gtgcttgtca
      721 ccatctatgc tgattacatt gcccctttat ttgacaaatt cacacctctt cctgagggaa
      781 agcttaagca agaaattgaa gtcatggcaa agagtattga cttccctttg actaaggtgt
      841 atgttgttca aggatctaaa cgctcttccc acagcaatgc ttatttttat ggcttcttca
      901 agaacaagcg aatagttttg tttgacactc tactagaaga gtattctgta ctaaacaaag
      961 acatccagga ggagtctggc atggaaccct gcaatgacgg agaaggggac tgtgaagaaa
     1021 taaaagctaa aaataagaaa caaggatgta aaaatgagga agtacttgct gtgctaggcc
     1081 atgaactggg gcactggaag ttgggacaca cagtcaaaaa tatcattatt agccagatga
     1141 attctttcct ttgttttttc ttgtttgctg tattaattgg tcgaaaggag ctttttgttg
     1201 catttggttt ttatgacagc caacccactc taattggact attgatcatc ttccagttta
     1261 ttttttcacc ttacaatgag gttctttctt tttgcctaac agtcctaagc cgcagatttg
     1321 aatttcaagc tgatgcattt gccaagaaac ttgggaaggc taaagactta tattctgctt
     1381 taatcaaact aaacaaagat aacttgggtt tccctgtttc tgactggttg ttctctatgt
     1441 ggcattattc tcatcctcca ctactagaga gactccaggc tttgaaaaat tcaaaacaag
     1501 actgagttgc ccagggtctg cagctgaaga cgtttctgat tattcctgtc ctggcagcat
     1561 gttctggctc ttgatgtttt taaacttttt ttttttttaa gaaaaattat taagtatgga
     1621 aaagccaaga tttaaataca tttaatatct catttcaaaa atgattttaa taatccattt
     1681 cttaaagaaa acactggatg aaattttgag gcttcatgtt tttaaaggct tagttttatc
     1741 tttaaaatct agtttaccgt caccttgtaa aattacttga gaaaatacac aacttgtttt
     1801 atttacatgc ttatatggaa cctgcatata aggcatttgg gggcatatgt ttaaaaggga
     1861 acacacctct gaatcctctc tgtaaggcag aaacagtggt cctgagtcac tgtgctcata
     1921 cctaagttga gacttatttt tactttcatg ctgttatgat ttaagctggc caatcaatgt
     1981 tttaaataag gaagaaagct aataattggt aaggctgatg ttttgtaaat ggaagtagtt
     2041 agaaatatgc tctctcctgt tctatcaaat ttctctgttc cctctcttgc tataatacac
     2101 tgatcaggag tttctaataa tgctttgaaa ttaggaatta tgtacagaat gttttaaatc
     2161 actgggtttt gtttttgttt ttaagaaagt ctttctcttt ctttccacct ggtgggtatg
     2221 atcccattag gggtaaacga gtatttttct aaacattcag ctttttctca ctcatactct
     2281 tgtattcaat aaatagtgca tccttttact tagcaaaaac tgccatgttg aacaggcttt
     2341 gctattttaa aagtgggaga atgtggaaag aagaagaaat gacattttaa gagatgtaag
     2401 attgaaatac tgatgattct cttatgatgt tacagggaaa aaatataatt ttctatctct
     2461 ttcaaggaca gaagagtttt catttttatt tttctaattt ttatcagtaa gtcttaagtg
     2521 ctatttaatc aggcctgatt ccattttaga aaattacagt tcttgatatg cagacaagtt
     2581 ttattttcaa aacaaatgtc atgaaagatt tccatttttt gaagctgcat gtttgactga
     2641 ttcaaatctc tgtccacttt ccgaatgaga cccaactttg tgcctagagc tcccacccac
     2701 tggtgatgtg taccttctgg gcatttattc caaagtggga tcaactgtgc gtgcttggta
     2761 tctggccaga aagtcttttg ctcagctgat atttgggtga tgtctttaca tggaaatgta
     2821 ataaaaataa acatctagtt tagtaccgta ttatttattt tcctaaggct aaagaggaac
     2881 agtgctatga tttgatccag catctttcat ctgtgaattc atgctgtgat aactgccttt
     2941 ccttccttcc gtgcctttaa atacaaattt cagctctgca caagtgaaac attaaaaatt
     3001 gccaatgcat attgatgtac tttgtcttta atttgacaaa atttgtctgt catttgttac
     3061 ctagtagata tatgtttatt accctagagg aaccaagtgc tagtactggg ttggccaaaa
     3121 agtgccttcg gtttttaagt aaaaataaaa gacacatttt tcattttcac caagaacgtt
     3181 ttattgaaaa atgtattcgc ccttttgttc cactaccttc tgccattttt caggcaactt
     3241 cataattcca tcttcccaaa acattttatc tttttgagca aagaactgtt ccaggtgcct
     3301 tttacagtct tccagggaat tgaaattttt tccattaaga gaattttgta aagaccaaaa
     3361 taatggaaat ctgaaggtgc aatgtctggt gaatacggtg gatgaatcag aacttcctat
     3421 ccaagctata acagttttgc ccggtcatca aggaaacacg cggccttgtg tcatcctgat
     3481 ggaaggttat gcgttttctg ttgactaatt ctgtacactt ttctcatcga gtgctgcttt
     3541 cagttggtct aattgggagc agtgcttgtt ggaattaatc gtttggtttt ctgaaaggag
     3601 ctcttaatag aggactcctc tccaatccca ccatatacac aacatcacct tctttggctg
     3661 aagaccggcc tttggtgtgg ttggtggtgg ttcatttcac ttgccccacg atctcttcca
     3721 ttccacgttc ttgtacagta tccacttttc atcgcccgtc acaatttgtt ttaaaaatgg
     3781 aacttttcat tacatttaag tagagaatcg catgtggaaa tatgatcaag aaggtttatt
     3841 ttgcttaact tatatggagc cccaacatca aagcgatgaa cataacgaag ctggcgcaga
     3901 tgattttcag cacttgattt ggatattttg agtatgtcca ctgtctccca cgtggtataa
     3961 cgttgattgt tctcagttaa tgtctcgatt tgatcgctgt caacttcaac tggtctacac
     4021 gactgtggag cctcgtccac cgagaaatct ccagcacgaa acctcgcaaa ccacttttga
     4081 caccttcgat cagtcacggc accttctcca tccactgcac aaattttttt ttttttgcat
     4141 ttcggttgca tttttacctg tctt
//
LOCUS       XM_032603074            1884 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fas ligand (FASLG), mRNA.
ACCESSION   XM_032603074
VERSION     XM_032603074.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1884
                     /gene="FASLG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 16 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739025"
     CDS             222..1010
                     /gene="FASLG"
                     /codon_start=1
                     /product="tumor necrosis factor ligand superfamily member
                     6"
                     /protein_id="XP_032458965.1"
                     /db_xref="GeneID:116739025"
                     /translation="MQQPLNYPYPQIFWVDSSASSPWASPGSVFPCPSSVPGRPGQRR
                     PPPLPPPLKKRRGHNTGLCLLVMFFMVLVALVGLGLGLFQLFHLQKELAELRESTSQR
                     HTESSLEKQIGHPNPSSEKTELRKAAHLTGKPNSRSIPLEWEDTYGIALVSGVKYKKG
                     SLVINETGLYFVYSKVYFRGQSCNNQPLNHKVYTRNFRYPQDLVLMEGKMMDYCTTGQ
                     MWARSSYLGAVFNLTNADHLYVNVSEPSLVNFEESKTFFGLYKL"
     misc_feature    600..1001
                     /gene="FASLG"
                     /note="Tumor Necrosis Factor; TNF superfamily members
                     include the cytokines: TNF (TNF-alpha), LT
                     (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL),
                     Fas ligand, and osteoprotegerin (OPG) ligand. These
                     proteins generally have an intracellular N-terminal...;
                     Region: TNF; cd00184"
                     /db_xref="CDD:238108"
     misc_feature    order(606..608,732..734,738..740,894..896,909..911,
                     987..989,999..1001)
                     /gene="FASLG"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238108"
     misc_feature    order(651..656,669..671,786..788,807..809,822..824)
                     /gene="FASLG"
                     /note="receptor binding sites [active]"
                     /db_xref="CDD:238108"
ORIGIN      
        1 cagatgcaaa gcgagtgggt gtctctttga gaagcagaaa gggggaaaga aagaacaaaa
       61 gagaggtgtt tccctgggtt ctgggaactc tataaagaga gagccggctc ctttctctcg
      121 agcagtacga aacaggagtc ccgtccttga cacctgggac tccccaggat tgagaaggag
      181 aaaaaccctt ggctgggggc tggcccgagg cactggctgc catgcagcag cccttgaatt
      241 acccgtaccc ccagattttc tgggtggaca gcagtgccag ctctccctgg gcttctccag
      301 ggtcagtctt cccctgtccg tcctctgtgc caggaaggcc cgggcaaagg aggccaccgc
      361 cactaccacc acctctgaag aagaggaggg gccacaacac aggcctgtgt ctccttgtga
      421 tgtttttcat ggttctggtg gccctggttg gattgggact gggactattt cagctcttcc
      481 acctgcagaa ggaactggcc gaactcagag agtccaccag ccaaaggcat acagaatcgt
      541 ctttggagaa gcaaataggt caccccaatc catcctctga gaaaacggag ctgagaaagg
      601 cagctcattt aacaggcaag cccaactcaa gatccatccc tctggaatgg gaagacactt
      661 atggaattgc cctggtctct ggggtgaagt ataagaaagg cagccttgtg atcaatgaaa
      721 ctgggctgta ttttgtgtat tccaaagtgt acttccgggg tcagtcctgc aacaaccagc
      781 ccctgaacca caaggtttac acgaggaatt ttaggtaccc ccaggacctg gtgctcatgg
      841 aggggaagat gatggactac tgcactactg gccagatgtg ggcccgcagc agctacctgg
      901 gggctgtgtt caatctcacc aatgctgacc atttatatgt caatgtatct gagccctctc
      961 tggtcaattt tgaggaatct aagacatttt ttggcttata taagctctaa gaaaagcact
     1021 ttgggattct ctccattatg gtttcttgtt ataggcactg agaatgttgt cttgaatgag
     1081 ggtcttctta agtccacttg aggtcaagag agaagacatg aaccaagagg atcttgagac
     1141 cacagggtcc agcagttcta cagttcctca tctcacctaa ggtccacgag ccagacagga
     1201 ggaggacatg aacatgaaac tctgggctgc catgtgaagc tgcagagaca gggaaaagca
     1261 gctaccaggg tgttctacac tcatcttaag tggcctagca cactttggta cactgaaaat
     1321 ggcacctttt aactcacctc ttggggtggg tctactgtct acctcagggg aggctgtctt
     1381 tcacgtatat ggatgcaaca tgaatgtata aggggtggga aaagagggct aggcttacat
     1441 gataagctaa agagactaaa aggccagtgt cccactggca gcatctttac ttctaaatgc
     1501 atagcctgag ccatcaggtg atgctaacag agaagcaagg gagatctttt gaggactcag
     1561 cccattccct atacagcatg tacatttcca gtgcaattgt aggggtgtgt gtgtgtgtgt
     1621 gtgtgcgcgc gtgactagaa gagttacata agtagagaga acgtggagat tgggaaggac
     1681 atgttaggaa aatatgggta gcatttggtg gtagattttg aatgcttttt gggcaaccaa
     1741 ctctaatagt cctcaaaact ctttgattgt cagttattaa agctgtttcc ccataagata
     1801 actaatattt atatatatat tgtgggtttt tttttttttt tttttttgcg gtacgcaggc
     1861 ctctcactct tgtggcctct cccg
//
LOCUS       XM_032603086            2825 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF superfamily member 18 (TNFSF18),
            mRNA.
ACCESSION   XM_032603086
VERSION     XM_032603086.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2825
                     /gene="TNFSF18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739034"
     CDS             48..584
                     /gene="TNFSF18"
                     /codon_start=1
                     /product="tumor necrosis factor ligand superfamily member
                     18"
                     /protein_id="XP_032458977.1"
                     /db_xref="GeneID:116739034"
                     /translation="MSLSHVENMPLGHSSPQGAQRPSWKKWLLYSTIVILLSLCSFST
                     LIFTFLPLKTASGPCIAKFGPLPSKWQMPSPEPSCVNKTADWRLKILQNGLYLIYGQV
                     APNTAYKGRAPFEVLLRKNEDPIQALTNNSTIQNVGGAYEFHAGDVIDLIFNAEHQVL
                     KNNTYWGIYLLANPQFIP"
ORIGIN      
        1 catcacttgt gaatgtttgt tttccacagc tctcattcct gcaaagaatg agtttgagcc
       61 acgtggagaa tatgccttta ggccattcaa gtcctcaagg agcacagaga ccatcctgga
      121 agaaatggct actctactca acaatagtta ttttgctatc actttgctcc ttcagtacac
      181 taatctttac ttttcttcca ctcaagactg ccagtgggcc ctgtatagcg aagtttggac
      241 cattaccttc aaaatggcaa atgccctctc ctgagccttc ttgtgtgaat aagacagctg
      301 attggaggct gaaaatactt cagaatggtt tgtatttaat ttacggccaa gtggctccca
      361 atacagccta caaggggcga gctccttttg aggtgctgct acgtaagaat gaagacccca
      421 tacaagctct aacgaacaac tctacaatcc agaacgtagg aggggcttat gaattccatg
      481 ctggagatgt aatagacttg atattcaacg ctgaacatca ggttctaaaa aataacacat
      541 actgggggat ctatttgcta gcaaatcccc agttcatccc ctagagactc gatttggtct
      601 cctctgtcct cttcagcaca tgcagagatg ccagtgggta ggatggagga ggaagattct
      661 caatgcctac agttcatctg ggcatacaga tcaacacaaa cagaactcct ttgcatgtgg
      721 attttcactt ctcatgcctg tctgaataag actcagaggg aggaccaaag acatttggta
      781 cccttgacgt taggtcagca aaggcacttt actagttcat gataaaatga atacgggtgg
      841 ctagaggaca gaatcttctc aaagtgtctt tgtctaatcc ttgaatccct gggtggaaaa
      901 atgaactctt attcccatgg gagccttatc tggtatgaaa aaagatccag ggcagtagcc
      961 tggccttgtt ctcatactct tggaccgtgg atttcttgac ttaattcttc ccacattccc
     1021 atcttctgag accctcctaa taaaaagtag tcagacttgg agggtggcca cagataggcc
     1081 agcaatacac cactttagat ttgatggcat tagaggatag agaacactct tgagaactgt
     1141 tgggacagag gcacaggtgg cattggaatg gaacgcactt tattcgggaa ctttccttga
     1201 ttttatcata ctcaggacgc agggtgcttt ataaaactag ctggtcaaaa tggtcattct
     1261 gaaccttcac atagggcttc aagagaactt gtgtacgtgt ctaaacattg tcagtagtaa
     1321 agaaagagta atcattacta atcataagat ttaccccaga aattgatatt accattactg
     1381 tattttgtca tgtaatgatt tcatattttt agctagctct gcacagtttg caaagtgctt
     1441 tcatatatca catgacaatt ctatgaagtt aatggagcag gtatttttgg cacagtttta
     1501 acaatgagaa tttggaggca gatggaacat acgtaacttg tttcaaccca cagaactagt
     1561 ggttaacaag gggccctggg cttcccactg tatcacactg ttctagctct agggttggta
     1621 tttctgctat catattagaa gtctataaag tttaggagat ttgatttttc aggcggtata
     1681 ttccctttta gcccaagcat agttagaggg aagctacacc aattctttcc tttctcagca
     1741 aacttttcct ttccttgcct ggagcaggga gcacagcgtg ttcaggacgg acttcaacca
     1801 aatccccttc ctcactttga agagcctgtc ttggtcaaat gtgtaaactt gcaaaaagaa
     1861 tgaatagcac tcaattctat gacagtctgc taaagttttg gactctgcaa aattaactag
     1921 ctgcttatgg gttcttgttg aaaggtatgt aatgtgatta catgataacc caagttgaaa
     1981 tatttatgga tatttgtaaa aggctacatt gttaattaat agtatcaccg tataaagcta
     2041 atttaaaaat atttgtattg tgagcaagaa aaactgcctg ggagcagact aagcctgagg
     2101 ccacggtgct tcttagtaat ttttttttaa aagatgtctg ctgagttagc ttagggccaa
     2161 aggcttggat gcctgattcc tcttgcatat gtatattttc tcaggagatt aaagttatat
     2221 gacttatatt tatggaaact tggtgatatt gattgttgtt gagttataag cagtagtgtg
     2281 ctggagtgga ccagtactag ttcgtaagaa gtgattgtta aatgttcaca aattgcacaa
     2341 tctggtggtt aaatacagtt atccttgaaa ttggccatgg tgggactatt tataccatgg
     2401 gaactggcaa atgctacaaa tcagggcttt tctttttgga aaacccattc accagtacac
     2461 cactgcttgt aaaactctcc ttcttaataa ctcctcttgg cttctgcgtc attcctggga
     2521 caatcaaggc agacaaggga gaaagtgaaa ttgtcatact cctagcaaaa gccccacaca
     2581 tcagtgattt ctcagggtaa gcagaggtct ctgcagttgc aaccagaaag acagctaccg
     2641 acagatgacc tttaaatttc cctagtgttg taatttcagg tttcgctttc aatgtatact
     2701 gtttccttgt ttcttcaaat agttgtttac attttaaacc tataataaag tatatgttgg
     2761 taagtcatct gtagctgatt tatctgcggg ttatcagact agagtttttg atccagagaa
     2821 tatga
//
LOCUS       XR_004345445             910 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739042
            (LOC116739042), ncRNA.
ACCESSION   XR_004345445
VERSION     XR_004345445.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..910
                     /gene="LOC116739042"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739042"
     ncRNA           1..910
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739042"
                     /product="uncharacterized LOC116739042"
                     /db_xref="GeneID:116739042"
ORIGIN      
        1 tgtcccctgc atcgggcagg ctgactctca accactgcgc caccagggaa gccctaaatg
       61 agatgctgtg atgcagaggt taacagaaaa atgactccag aagagtgatg cattctacct
      121 acaactcttc ccttgtatca tgtctgaaat gcatacgcac cagcacagaa tttaaaactg
      181 accactgaaa agtcagacta tttcctctgt gtttctcatt tgttccttct cctaattcct
      241 ctccaaattt tagatgcaag tgcctctgct tgctcaattc agtaaatatt tatttaaata
      301 aggaactgtt ccaaataaaa tccagttcct tcttctgccc ttaactaaga ttaggctctg
      361 gaatatcctg tttaattatt ttaaccttct gagcacatct ttaaaaagat gacatgctta
      421 tctccagaag aatacattcc aagcacaagg aactgtattc aatatcttgt aataacccat
      481 aatggaagag aatgttaaaa gaagaacatg aatatttgta tatatatgta taactgaacc
      541 actgtactgt gagagagcat tagatagaca ttggattcct ccaaaatcag gtctgcagtc
      601 cctgccacgt tccccttata cactatttac catgacttta tgcttgtgat agtgtatggc
      661 atggcatatt cagtgaaaaa tattcagtgt gtcagaactc aggagcacta cacagctggt
      721 tttgcctact ctagatatca cagtattcgt tgttggaaca aataaggccc aggtggcctg
      781 aagatacata cataaatgga tgataggtaa gaggaaatag acataataca taaatatggt
      841 tttaaacttg gaattttatg aaggcgacaa cagtctgtgt taagattaat aaacgcctac
      901 tctgtaaaga
//
LOCUS       XM_032603104            2442 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus progestin and adipoQ receptor family
            member 7 (PAQR7), transcript variant X1, mRNA.
ACCESSION   XM_032603104
VERSION     XM_032603104.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2442
                     /gene="PAQR7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 long SRA reads, 7
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739046"
     CDS             353..1405
                     /gene="PAQR7"
                     /codon_start=1
                     /product="membrane progestin receptor alpha"
                     /protein_id="XP_032458995.1"
                     /db_xref="GeneID:116739046"
                     /translation="MATVVAQKLSHLLPSLRQVHQMPRPSVQPEPVFTVDRAEVPPIF
                     WKPYIYVGYRPLHRTWRFYFRTLFQQHNEAVNVWTHLLAALVLLLRLAIFVGTVDFRG
                     DLHALPLFIIVLASVTYLSLSALAHLLQAKSEFWHYSFFFLDYVGVAVYQFGSALAHF
                     YYAIEPAWHAQVQTFYLPMAAFLAWLSCAGSCYNKYIQKPGLLGRTCQEMPSALAYAL
                     DISPVVHRILVSPNPAMDDPALLYHKCQVVFFLLAATFFSAFVPERWFPGSCHVFGQG
                     HQLFHVFLVLCTLAQLEAVALDYEARRPIYEPLHTRWPHNFSGLFLLTVGSSILTAFL
                     LSQLVRRKLSLDRKTQ"
     misc_feature    554..1228
                     /gene="PAQR7"
                     /note="Haemolysin-III related; Region: HlyIII; pfam03006"
                     /db_xref="CDD:427098"
ORIGIN      
        1 gggtagaggc tgctggcgcc cggccaggcg ggcgcgatgg gcgggcggcg gcctagtcct
       61 gggcccggag ccctaagcta aggcccactg ccgcccgccg ccgccccgcc ctcccccggc
      121 tcggggcgga gcctccgcct ggctgcccct ttatctgccc tattgtagcc gggatgcaga
      181 gggccgccga gggccgccgg gtcgcagccg gcctcctttt gcaactcgtc tgtagaggac
      241 agaagccaat caagtttgcc tcacatccgt gaaccaggcc ctggacacct ggtctcagcc
      301 cagctttgcc cgccttgctg tgtgatcttg gctcctcgcc ccacccacag ccatggccac
      361 agtggtggcc cagaagctca gccacctcct gcccagtttg cggcaggtcc accagatgcc
      421 tcggccgtct gtgcagccag agcctgtgtt cacggtggac cgagccgagg tgccgcccat
      481 cttctggaag ccatacatct atgtgggcta ccggccgctg cataggacct ggcgcttcta
      541 cttccgcaca ctgttccagc agcacaacga ggcggtgaac gtctggaccc acctgctggc
      601 ggccctggtg ctgctgctgc ggctggccat ctttgtgggg accgtggact tccggggaga
      661 cctgcacgcc ctgcccctct tcatcattgt tcttgcctcc gtcacctacc tctccctcag
      721 tgccttggct cacctcctgc aggccaagtc cgagttctgg cattacagct tcttcttcct
      781 ggactacgtg ggtgtggctg tgtaccagtt tggcagtgcc ctggcacact tctactacgc
      841 cattgagccc gcctggcatg cccaggtaca gaccttttac ctgcccatgg ctgcctttct
      901 cgcctggctt tcctgcgctg gctcctgcta caacaagtac atccagaagc ccggcctgct
      961 gggccgcact tgccaggaga tgccttcggc gctggcttac gcactggaca tcagccccgt
     1021 ggtgcaccgc atcctcgtgt cccccaaccc tgccatggac gacccggctc ttctctacca
     1081 caaatgccag gtggtcttct ttctgctggc tgccactttc ttctctgcct tcgtgcctga
     1141 gcgctggttc cctggcagct gccatgtctt tgggcagggc caccagctct tccatgtctt
     1201 cttggtgctg tgcacactgg ctcagctgga ggccgtggcg ctggactacg aggcccggcg
     1261 gcccatctat gagcctctgc atacccgctg gccccacaac ttctccggcc tcttcttgct
     1321 tactgtaggc agcagcatcc tcactgcatt ccttctgagc cagctggtac ggcgcaaact
     1381 cagtctcgat cggaagaccc agtgaagggg ggtggcagct tttagggagg gaggtatagt
     1441 gggggcccaa gggtccgggc ttggctccag atgggaacaa ggcctggtaa aattgcttgt
     1501 gtgcttgtgt ctggccctca gtgacttctc tgtgcacgcc tcagctgcca aggggggcac
     1561 tggccagtcc ttggatttga ggattgactg gagctgctgg ggtccacttc agggcctgcc
     1621 ccagctccct gccctgggag agggaaagag aaagatgtgg ggcaccctgg tttgcctccc
     1681 ccccttgcct ctcacttagg ggtgaggatg gaggatcagc tggggccaag accctggcct
     1741 gggccttcca gattatctgg gagggggtga agttgggatt taggtcagag tcaaatctga
     1801 gctgagagat agaggaaggg tcagcaactg ccctctaccc agatttcact ggtggatagg
     1861 gaaaggacag gccccaaatg tgtgcaggat cttaccattc ttgaacccca gcctgaagtt
     1921 ttggtgctgc agagagcccc caaagataga aggttgtgcc aggtagaaat ggatcccatc
     1981 cagtgcccca tacctcttca gccactatcc cagacagtga gccctgaccc tcctagctct
     2041 ggcttctacg tcccacacat cctgttccca gtgtctttcc tggttccctt gttcatgatt
     2101 cagtgtttat ccattcagtg cttcttgggc ctctgctcag aggcaggcca ctgactgggc
     2161 tccgtggatc aatgcaggat ggtaaaggct ttaatatcgg aatgaactgt caggggaagc
     2221 actgaggagg gaataattag tgttgcctgg gatcctcagg gtcttgggtt ggggagagtg
     2281 aataggagtt tacagatgga gaagaggaag ggcattccag gtagagggaa aaacctgtcc
     2341 aaaggccaag aggtatggaa gaaggagttc actgcggctg gaattaatta ggagtagtct
     2401 ggactctgat gtcctggatg caataaagtg actgtgataa ga
//
LOCUS       XM_032603111            2346 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus progestin and adipoQ receptor family
            member 7 (PAQR7), transcript variant X2, mRNA.
ACCESSION   XM_032603111
VERSION     XM_032603111.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2346
                     /gene="PAQR7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739046"
     CDS             257..1309
                     /gene="PAQR7"
                     /codon_start=1
                     /product="membrane progestin receptor alpha"
                     /protein_id="XP_032459002.1"
                     /db_xref="GeneID:116739046"
                     /translation="MATVVAQKLSHLLPSLRQVHQMPRPSVQPEPVFTVDRAEVPPIF
                     WKPYIYVGYRPLHRTWRFYFRTLFQQHNEAVNVWTHLLAALVLLLRLAIFVGTVDFRG
                     DLHALPLFIIVLASVTYLSLSALAHLLQAKSEFWHYSFFFLDYVGVAVYQFGSALAHF
                     YYAIEPAWHAQVQTFYLPMAAFLAWLSCAGSCYNKYIQKPGLLGRTCQEMPSALAYAL
                     DISPVVHRILVSPNPAMDDPALLYHKCQVVFFLLAATFFSAFVPERWFPGSCHVFGQG
                     HQLFHVFLVLCTLAQLEAVALDYEARRPIYEPLHTRWPHNFSGLFLLTVGSSILTAFL
                     LSQLVRRKLSLDRKTQ"
     misc_feature    458..1132
                     /gene="PAQR7"
                     /note="Haemolysin-III related; Region: HlyIII; pfam03006"
                     /db_xref="CDD:427098"
ORIGIN      
        1 gctggagcgc ttgctgagca acgacgtctg ctctctgggc ctccgagttc ccatcagcac
       61 gaaaaccaca ggaactccca agactgtagt catcggtgtg cctgaccact ctcgcctcca
      121 cgtgcaacac gttctgtaga ggacagaagc caatcaagtt tgcctcacat ccgtgaacca
      181 ggccctggac acctggtctc agcccagctt tgcccgcctt gctgtgtgat cttggctcct
      241 cgccccaccc acagccatgg ccacagtggt ggcccagaag ctcagccacc tcctgcccag
      301 tttgcggcag gtccaccaga tgcctcggcc gtctgtgcag ccagagcctg tgttcacggt
      361 ggaccgagcc gaggtgccgc ccatcttctg gaagccatac atctatgtgg gctaccggcc
      421 gctgcatagg acctggcgct tctacttccg cacactgttc cagcagcaca acgaggcggt
      481 gaacgtctgg acccacctgc tggcggccct ggtgctgctg ctgcggctgg ccatctttgt
      541 ggggaccgtg gacttccggg gagacctgca cgccctgccc ctcttcatca ttgttcttgc
      601 ctccgtcacc tacctctccc tcagtgcctt ggctcacctc ctgcaggcca agtccgagtt
      661 ctggcattac agcttcttct tcctggacta cgtgggtgtg gctgtgtacc agtttggcag
      721 tgccctggca cacttctact acgccattga gcccgcctgg catgcccagg tacagacctt
      781 ttacctgccc atggctgcct ttctcgcctg gctttcctgc gctggctcct gctacaacaa
      841 gtacatccag aagcccggcc tgctgggccg cacttgccag gagatgcctt cggcgctggc
      901 ttacgcactg gacatcagcc ccgtggtgca ccgcatcctc gtgtccccca accctgccat
      961 ggacgacccg gctcttctct accacaaatg ccaggtggtc ttctttctgc tggctgccac
     1021 tttcttctct gccttcgtgc ctgagcgctg gttccctggc agctgccatg tctttgggca
     1081 gggccaccag ctcttccatg tcttcttggt gctgtgcaca ctggctcagc tggaggccgt
     1141 ggcgctggac tacgaggccc ggcggcccat ctatgagcct ctgcataccc gctggcccca
     1201 caacttctcc ggcctcttct tgcttactgt aggcagcagc atcctcactg cattccttct
     1261 gagccagctg gtacggcgca aactcagtct cgatcggaag acccagtgaa ggggggtggc
     1321 agcttttagg gagggaggta tagtgggggc ccaagggtcc gggcttggct ccagatggga
     1381 acaaggcctg gtaaaattgc ttgtgtgctt gtgtctggcc ctcagtgact tctctgtgca
     1441 cgcctcagct gccaaggggg gcactggcca gtccttggat ttgaggattg actggagctg
     1501 ctggggtcca cttcagggcc tgccccagct ccctgccctg ggagagggaa agagaaagat
     1561 gtggggcacc ctggtttgcc tccccccctt gcctctcact taggggtgag gatggaggat
     1621 cagctggggc caagaccctg gcctgggcct tccagattat ctgggagggg gtgaagttgg
     1681 gatttaggtc agagtcaaat ctgagctgag agatagagga agggtcagca actgccctct
     1741 acccagattt cactggtgga tagggaaagg acaggcccca aatgtgtgca ggatcttacc
     1801 attcttgaac cccagcctga agttttggtg ctgcagagag cccccaaaga tagaaggttg
     1861 tgccaggtag aaatggatcc catccagtgc cccatacctc ttcagccact atcccagaca
     1921 gtgagccctg accctcctag ctctggcttc tacgtcccac acatcctgtt cccagtgtct
     1981 ttcctggttc ccttgttcat gattcagtgt ttatccattc agtgcttctt gggcctctgc
     2041 tcagaggcag gccactgact gggctccgtg gatcaatgca ggatggtaaa ggctttaata
     2101 tcggaatgaa ctgtcagggg aagcactgag gagggaataa ttagtgttgc ctgggatcct
     2161 cagggtcttg ggttggggag agtgaatagg agtttacaga tggagaagag gaagggcatt
     2221 ccaggtagag ggaaaaacct gtccaaaggc caagaggtat ggaagaagga gttcactgcg
     2281 gctggaatta attaggagta gtctggactc tgatgtcctg gatgcaataa agtgactgtg
     2341 ataaga
//
LOCUS       XM_032603126            1851 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 27
            (CCDC27), mRNA.
ACCESSION   XM_032603126
VERSION     XM_032603126.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 16% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1851
                     /gene="CCDC27"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins"
                     /db_xref="GeneID:116739057"
     CDS             1..1851
                     /gene="CCDC27"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 27"
                     /protein_id="XP_032459017.1"
                     /db_xref="GeneID:116739057"
                     /translation="MLPIRASTPKKKSPVPNWVEKGLIVLRQVASRNEQTPAWKLRQK
                     ERSLSKSAQAINRYYRKMRDFNKDTSPQDSGFLSEMEELWHKFFTRPGCPQFSTRSTS
                     MTHYGSATTLDLPEDRCISSETWKVTEDLLSGQEGLDMKVDGCQLPFSKSVCEFNYLQ
                     KKSEAQVLSPAPSNPVLGQSYPRKWVPWYISVIHEKDRCLFALGKEVQRLSELEVQVQ
                     KKDAEILALQEEREALRKQLKCLLKSKSQEASLSEVMTEWPAESAPKLQGRLNTLRTF
                     FGGKEEPEHRQQMQGEHAMTDRGKDLEGGSYEEEEGLEREADPAADEGARASASRKGI
                     LQEKAATVVAAEGAMEGEAAGRKRAASMAHTFTGELRAQLEGHEELVREFQFQLEITR
                     TRHSLATGAIMSLQRQVEIQESQLQSFKTENEALQKELRERKQQLQAMSDKFSNLRED
                     KKHEEMMGQIEKDNLLLRQQVSELEKELVKRERTISELEAKVSQLQAQVNQSQDHLQR
                     RKQLQEEMQNKNEMIQRAEQQALVALESAQSRLERLRNKIIQATFDTIEFKSLATEIS
                     DNDILEALQRIISERTDYYNQLKQKGIKVPPLQQSEILSSTSKSKKITSK"
     misc_feature    613..>1566
                     /gene="CCDC27"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <1105..>1653
                     /gene="CCDC27"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 atgttaccga tcagagccag cacgcccaag aagaaaagtc cggtgcccaa ctgggtagag
       61 aagggcctga tcgtcctacg gcaagtggcc agccggaacg aacagacccc agcatggaaa
      121 cttcgccaaa aagagcgctc cctcagcaag tcagctcagg ccatcaaccg ctactacagg
      181 aagatgagag atttcaacaa ggacaccagc ccccaggaca gcggcttcct gtctgaaatg
      241 gaggagcttt ggcacaagtt tttcacacgt ccgggctgtc cccagttcag caccaggtcc
      301 acgtccatga cccactatgg ttcagccacg actctcgatc tccccgagga caggtgcatc
      361 agctctgaga cctggaaggt gactgaggac ctgctctctg gtcaggaggg cttggacatg
      421 aaggtggacg gctgccagct tccctttagt aagagtgtct gcgagttcaa ttaccttcag
      481 aagaagagtg aagcccaggt gttgagcccg gcccccagca acccggtcct agggcagagc
      541 tacccaagga agtgggtacc ttggtacatc tccgtcatcc acgagaagga ccggtgcctg
      601 tttgcactgg ggaaggaagt ccagcgcctc tccgagctgg aggtgcaggt tcagaagaaa
      661 gacgcggaga tcctggctct ccaggaggag agggaggcct tgagaaagca gctgaaatgc
      721 ctcctgaaga gcaaaagcca ggaggcctcg ctgagcgagg tcatgacgga gtggccggcg
      781 gagtcagcgc cgaagctgca ggggagactg aacacactta ggaccttctt cggaggcaag
      841 gaggagccgg agcacaggca gcagatgcag ggagagcacg ccatgaccga cagaggcaag
      901 gacctggaag gaggcagcta cgaggaggaa gaaggcctgg aacgggaggc cgacccggcg
      961 gcggacgagg gggcgagggc cagtgccagc aggaagggga ttctgcagga gaaggcggcg
     1021 acggtggtgg ccgcagaggg cgccatggag ggggaggccg cgggcaggaa gagggctgcc
     1081 tccatggccc acaccttcac gggggagctg agagcccagc tggaggggca tgaagagctg
     1141 gtccgggagt tccagttcca gctcgagatc acgaggacaa gacactccct ggcaacagga
     1201 gccatcatgt ctttacaacg acaagtggaa atccaagagt cccagctgca gagcttcaaa
     1261 acggagaacg aggccttgca gaaggagctg cgagagcgga agcagcagct gcaagccatg
     1321 tccgacaagt tctccaacct ccgggaagac aagaaacacg aggagatgat gggacagatt
     1381 gagaaggaca accttctcct ccgacagcaa gtgtcagagc tggagaagga actggtcaag
     1441 cgggaacgaa ccatctcgga gttggaggcc aaggtcagcc agctgcaggc ccaggtgaac
     1501 cagagccagg accatctgca gaggcggaag cagctgcagg aggagatgca gaacaagaat
     1561 gagatgatcc agcgggcgga acagcaggcc ctcgtggccc tggagagcgc ccagtccagg
     1621 ctcgaaagac taagaaacaa gatcatccag gccactttcg acaccataga attcaagtcc
     1681 ttggccaccg agatctctga caatgacatc ctggaagctt tgcagaggat catctcagag
     1741 agaactgact actacaacca gttgaaacag aaggggatca aagtgccccc cctgcagcag
     1801 tcggagatct tatcctcgac cagcaagtcc aagaagataa cctccaagta g
//
LOCUS       XM_032603139            4202 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cold shock domain containing E1 (CSDE1),
            transcript variant X1, mRNA.
ACCESSION   XM_032603139
VERSION     XM_032603139.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4202
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4202
                     /gene="CSDE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 72 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739061"
     CDS             554..2950
                     /gene="CSDE1"
                     /codon_start=1
                     /product="cold shock domain-containing protein E1 isoform
                     X1"
                     /protein_id="XP_032459030.1"
                     /db_xref="GeneID:116739061"
                     /translation="MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSE
                     RQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERING
                     QVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINF
                     VIDNNKHTGAVSARNIMLLKKKQARYQGVVCAMKDAFGFIERGDIVKEIFFHYSEFKG
                     DLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS
                     KTQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNI
                     EVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVE
                     FTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
                     EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSNSPQIGDKVEFSISDKQRPGQQIATCVR
                     LLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSL
                     SKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIMDE
                     GDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVK
                     DQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVIFNQRTGKCSACNVWRVCE
                     GPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
                     "
     misc_feature    629..823
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    1112..1297
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(1127..1129,1148..1150,1181..1183,1265..1267)
                     /gene="CSDE1"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:239905"
     misc_feature    order(1142..1159,1178..1189)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    1601..1792
                     /gene="CSDE1"
                     /note="Cold shock protein domain; Region: CSP; smart00357"
                     /db_xref="CDD:214633"
     misc_feature    2114..2299
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(2141..2158,2177..2188)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    2573..2767
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    2819..2911
                     /gene="CSDE1"
                     /note="SUZ-C motif; Region: SUZ-C; pfam12901"
                     /db_xref="CDD:463745"
ORIGIN      
        1 gggtacgctc cccccccttc ctgtgcacgc gctcgaagcc cgcaactctc gcgagagaag
       61 cgagatttat tcctacgtac cgggccgtgc tgcttatggc ggcgctggag agggggcgct
      121 gagctgttgg gtatgaagtg taacagaaca gactttacca cctgaaactg ctgcttcaag
      181 ttcagatcag gcaaggaaca aacctcgaaa caaccaacaa gaccaaagaa gagtacactt
      241 aagttgaaga cacaacactt gatctgaaac aagaagtttg tgcctactca acagctttga
      301 aagagcactt cccaacgctg ctagtagtct ttgttttctt cagtgctgta ctgtgagatt
      361 gcctggtgca gcagcagttg tattctttat tagcttgata ggtcattttc tctcgcacgc
      421 gcgctctctc tctcttttct tttttttttt tttttttttt taacaatagc aactttcatc
      481 ctttgaaacg tgtgctgaaa aagaagaatc agcaaatact actgaaagtg caatatttga
      541 ttatcactgc gagatgagct ttgatccaaa tcttctccac aacaatgggc ataatgggta
      601 ccccaatggt acttcagcag cactgcgtga aactggggtt attgaaaaac tgctaacctc
      661 ttatggattt attcagtgtt cagaacgtca agctagactt ttcttccact gttcacagta
      721 taatggcaac ctgcaggact taaaagtagg agatgatgtt gaatttgaag tatcatctga
      781 ccggcggact gggaagccca ttgctgttaa actggtgaag ataaaacaag aaatcctccc
      841 tgaagaacga attaatggac aagttgtgtg cgctgttcct cacaacttag agagtaaatc
      901 tccagctgcc ccgggtcaga gtccaacagg gagtgtatgc tacgaacgta atggggaagt
      961 gttttatctg acttacaccc ctgaagatgt tgaagggaat gttcagctgg aaactggaga
     1021 taaaataaac tttgtaattg ataacaataa acatactggt gctgtaagtg ctcgtaatat
     1081 tatgctgttg aaaaagaaac aagctcgcta tcagggagta gtttgtgcca tgaaggatgc
     1141 gtttggtttt attgaaagag gtgatattgt aaaggagata ttctttcact atagtgaatt
     1201 taagggtgac ttagaaacct tgcagcctgg agatgacgtg gaattcacaa tcaaggacag
     1261 aaatggtaaa gaagttgcaa cagatgtcag actattgcct caaggaacag tcatttttga
     1321 agatatcagc attgaacatt ttgaaggaac tgtaaccaaa gttatcccaa aagtacccag
     1381 taaaacccag aatgacccat tgccaggacg catcaaagtt gattttgtga ttcctaaaga
     1441 acttcccttt ggagataaag atacgaaatc caaggtgacc ctgctggaag gtgaccacgt
     1501 taggtttaat atttcaacag accgtcgtga caaattagaa cgagcaacca acatagaagt
     1561 tctgtcaaat acatttcagt tcactaatga agccagagaa atgggtgtaa ttgctgccat
     1621 gagagatggt tttggtttca tcaaatgtgt ggatcgtgat gctcgtatgt tcttccactt
     1681 cagtgaaatt ctggatggga accagctcca tattgcagat gaagtagagt ttactgtggt
     1741 tcctgatatg ctctctgccc aaagaaatca tgctattagg attaaaaaac ttcccaaggg
     1801 cacggtttcg ttccactccc attcagatca tcgttttctg ggcaccgtag aaaaagaagc
     1861 cactttttcc aatcctaaaa ccactagccc aaataaaggc aaagaaaagg aggctgagga
     1921 tggtattatt gcttatgatg attgtggggt gaaattgact attgcttttc aagccaagga
     1981 tgtggaagga tctaattctc ctcagatagg agacaaggtt gaatttagta ttagtgacaa
     2041 acagaggcct ggacagcaga ttgcaacttg tgtgcgactc ttaggtcgta attccaactc
     2101 caagaggctc ttgggttatg tggcaacttt gaaggataat tttggattta ttgaaacagc
     2161 caatcatgat aaggaaatct ttttccatta cagtgagttc tctggtgatg ttgatagcct
     2221 ggaactgggg gacatggtcg agtacagctt gtccaaagga aaaggcaaca aagtcagtgc
     2281 agaaaaagtg aacaaaacac actcagtgaa tggcattact gaggaagctg atcccaccat
     2341 ctactctggt aaagtcattc gccccttgag gagtgtcgat ccaacacaga ctgagtacca
     2401 aggaatgatt gagatcatgg acgaagggga tatgaaaggt gaggtctatc catttggcat
     2461 agttgggatg gccaacaaag gggattgcct acagaaaggg gagagcgtca agttccagtt
     2521 gtgtgtcttg ggccaaaatg cacagactat ggcctacaac atcacacccc tgcgtagggc
     2581 cacagtggag tgtgtgaaag atcagtttgg cttcattaac tatgaagtag gagatagcaa
     2641 gaagctcttt ttccatgtga aagaagttca ggatggcatt gagctacagg caggagatga
     2701 ggtggaattc tcagtgattt ttaatcagcg cactggcaag tgcagtgctt gtaatgtttg
     2761 gcgagtctgc gagggcccca aggctgttgc agctccacga cctgataggt tggtcaatcg
     2821 cttgaagaac atcaccctgg atgatgccag tgctcctcgc ctaatggttc ttcgtcagcc
     2881 aaggggacca gataactcaa tgggatttgg tgccgaaaga aagatccgtc aagctggtgt
     2941 cattgactaa ccacatccac aaagcacatc attaatccac tatgatcaag ttggggggat
     3001 tctggtgaag ggttctgaat atctccctct tcatccctcc caaaatctgg aatacttatt
     3061 ctattgagct gttacaccag ttttaacacc ttcctcgtgt tatgtttaaa aaaataaata
     3121 aatttaagaa aaccatttta aaattatgca cagttgcagc ctggaaaact taaggtggcg
     3181 ccttatagaa tcaattttag gagctttatt tggtgcattt aacgcaactg gtaattgcaa
     3241 aatccacttc tgcctgtgta agtgaaaaat atagactgtt accttgttgg ccctatgaaa
     3301 ttctgcactt gatacttagt atatctactc taccttcatt acttttggca agatgttctg
     3361 ccttaggact cagttgcatt ctttttcctt ttctgttcat tatgctttaa ttctgaggac
     3421 catatgatgg tagaatatat taaaaattac aaaaatttgt ataggcaaac cagttcttta
     3481 agttgatggc caaatgttaa aatgttattt ttcatatcat ttataatctt atcacagtcc
     3541 acttaatgaa gtttggttag atttcagtga aaattatctt ccagggtagt tccccccccc
     3601 gaatgggggt tgtaccacaa ttagtatata tggtgcagaa tttcatgcaa atgaggtgtg
     3661 ccagcagtgt gataatttaa acgtatttaa agaaaaacaa aaggatgaat gcacaaactt
     3721 gctgctgctt agatcactgc agcttctagg acccagtttc ttttactgat ttcaaaacaa
     3781 aacaaaaaca aacaaaaaat aataaaaaag ttgtgcctga aatgaatctt gtttttttta
     3841 taagtagccg cctggttcct gtgtcctgta aaaagtacag gcacttgacc cttggtgtag
     3901 cttctgttcg gctttatatc atgggaaagg attggtctga tttcttggcc ctcatcttga
     3961 attggccacg tacagggtcc ctggccagtg gactgaaggc tttgtctaag atgacaaggg
     4021 tcagctcagg ggatgtgggg gagggtgttt tatcttcccc gttgtcgttt gaggttttga
     4081 tcttctctgg gtaaagaggc catttatctt tgtaaacacg ttaacacttt ttctttctcc
     4141 agttttctgt taatggcgaa agaatggaag cgaataaagt tttactgatt tttgagacac
     4201 ta
//
LOCUS       XM_032603147            3702 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cold shock domain containing E1 (CSDE1),
            transcript variant X2, mRNA.
ACCESSION   XM_032603147
VERSION     XM_032603147.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3702
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3702
                     /gene="CSDE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 57 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739061"
     CDS             61..2457
                     /gene="CSDE1"
                     /codon_start=1
                     /product="cold shock domain-containing protein E1 isoform
                     X1"
                     /protein_id="XP_032459038.1"
                     /db_xref="GeneID:116739061"
                     /translation="MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSE
                     RQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERING
                     QVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINF
                     VIDNNKHTGAVSARNIMLLKKKQARYQGVVCAMKDAFGFIERGDIVKEIFFHYSEFKG
                     DLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS
                     KTQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNI
                     EVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVE
                     FTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
                     EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSNSPQIGDKVEFSISDKQRPGQQIATCVR
                     LLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSL
                     SKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIMDE
                     GDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVK
                     DQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVIFNQRTGKCSACNVWRVCE
                     GPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
                     "
     misc_feature    136..330
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    619..804
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(634..636,655..657,688..690,772..774)
                     /gene="CSDE1"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:239905"
     misc_feature    order(649..666,685..696)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    1108..1299
                     /gene="CSDE1"
                     /note="Cold shock protein domain; Region: CSP; smart00357"
                     /db_xref="CDD:214633"
     misc_feature    1621..1806
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(1648..1665,1684..1695)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    2080..2274
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    2326..2418
                     /gene="CSDE1"
                     /note="SUZ-C motif; Region: SUZ-C; pfam12901"
                     /db_xref="CDD:463745"
ORIGIN      
        1 cctacgtacc gggccgtgct gcttatggcg gcgctggaga gggggcgctg agctgttggg
       61 atgagctttg atccaaatct tctccacaac aatgggcata atgggtaccc caatggtact
      121 tcagcagcac tgcgtgaaac tggggttatt gaaaaactgc taacctctta tggatttatt
      181 cagtgttcag aacgtcaagc tagacttttc ttccactgtt cacagtataa tggcaacctg
      241 caggacttaa aagtaggaga tgatgttgaa tttgaagtat catctgaccg gcggactggg
      301 aagcccattg ctgttaaact ggtgaagata aaacaagaaa tcctccctga agaacgaatt
      361 aatggacaag ttgtgtgcgc tgttcctcac aacttagaga gtaaatctcc agctgccccg
      421 ggtcagagtc caacagggag tgtatgctac gaacgtaatg gggaagtgtt ttatctgact
      481 tacacccctg aagatgttga agggaatgtt cagctggaaa ctggagataa aataaacttt
      541 gtaattgata acaataaaca tactggtgct gtaagtgctc gtaatattat gctgttgaaa
      601 aagaaacaag ctcgctatca gggagtagtt tgtgccatga aggatgcgtt tggttttatt
      661 gaaagaggtg atattgtaaa ggagatattc tttcactata gtgaatttaa gggtgactta
      721 gaaaccttgc agcctggaga tgacgtggaa ttcacaatca aggacagaaa tggtaaagaa
      781 gttgcaacag atgtcagact attgcctcaa ggaacagtca tttttgaaga tatcagcatt
      841 gaacattttg aaggaactgt aaccaaagtt atcccaaaag tacccagtaa aacccagaat
      901 gacccattgc caggacgcat caaagttgat tttgtgattc ctaaagaact tccctttgga
      961 gataaagata cgaaatccaa ggtgaccctg ctggaaggtg accacgttag gtttaatatt
     1021 tcaacagacc gtcgtgacaa attagaacga gcaaccaaca tagaagttct gtcaaataca
     1081 tttcagttca ctaatgaagc cagagaaatg ggtgtaattg ctgccatgag agatggtttt
     1141 ggtttcatca aatgtgtgga tcgtgatgct cgtatgttct tccacttcag tgaaattctg
     1201 gatgggaacc agctccatat tgcagatgaa gtagagttta ctgtggttcc tgatatgctc
     1261 tctgcccaaa gaaatcatgc tattaggatt aaaaaacttc ccaagggcac ggtttcgttc
     1321 cactcccatt cagatcatcg ttttctgggc accgtagaaa aagaagccac tttttccaat
     1381 cctaaaacca ctagcccaaa taaaggcaaa gaaaaggagg ctgaggatgg tattattgct
     1441 tatgatgatt gtggggtgaa attgactatt gcttttcaag ccaaggatgt ggaaggatct
     1501 aattctcctc agataggaga caaggttgaa tttagtatta gtgacaaaca gaggcctgga
     1561 cagcagattg caacttgtgt gcgactctta ggtcgtaatt ccaactccaa gaggctcttg
     1621 ggttatgtgg caactttgaa ggataatttt ggatttattg aaacagccaa tcatgataag
     1681 gaaatctttt tccattacag tgagttctct ggtgatgttg atagcctgga actgggggac
     1741 atggtcgagt acagcttgtc caaaggaaaa ggcaacaaag tcagtgcaga aaaagtgaac
     1801 aaaacacact cagtgaatgg cattactgag gaagctgatc ccaccatcta ctctggtaaa
     1861 gtcattcgcc ccttgaggag tgtcgatcca acacagactg agtaccaagg aatgattgag
     1921 atcatggacg aaggggatat gaaaggtgag gtctatccat ttggcatagt tgggatggcc
     1981 aacaaagggg attgcctaca gaaaggggag agcgtcaagt tccagttgtg tgtcttgggc
     2041 caaaatgcac agactatggc ctacaacatc acacccctgc gtagggccac agtggagtgt
     2101 gtgaaagatc agtttggctt cattaactat gaagtaggag atagcaagaa gctctttttc
     2161 catgtgaaag aagttcagga tggcattgag ctacaggcag gagatgaggt ggaattctca
     2221 gtgattttta atcagcgcac tggcaagtgc agtgcttgta atgtttggcg agtctgcgag
     2281 ggccccaagg ctgttgcagc tccacgacct gataggttgg tcaatcgctt gaagaacatc
     2341 accctggatg atgccagtgc tcctcgccta atggttcttc gtcagccaag gggaccagat
     2401 aactcaatgg gatttggtgc cgaaagaaag atccgtcaag ctggtgtcat tgactaacca
     2461 catccacaaa gcacatcatt aatccactat gatcaagttg gggggattct ggtgaagggt
     2521 tctgaatatc tccctcttca tccctcccaa aatctggaat acttattcta ttgagctgtt
     2581 acaccagttt taacaccttc ctcgtgttat gtttaaaaaa ataaataaat ttaagaaaac
     2641 cattttaaaa ttatgcacag ttgcagcctg gaaaacttaa ggtggcgcct tatagaatca
     2701 attttaggag ctttatttgg tgcatttaac gcaactggta attgcaaaat ccacttctgc
     2761 ctgtgtaagt gaaaaatata gactgttacc ttgttggccc tatgaaattc tgcacttgat
     2821 acttagtata tctactctac cttcattact tttggcaaga tgttctgcct taggactcag
     2881 ttgcattctt tttccttttc tgttcattat gctttaattc tgaggaccat atgatggtag
     2941 aatatattaa aaattacaaa aatttgtata ggcaaaccag ttctttaagt tgatggccaa
     3001 atgttaaaat gttatttttc atatcattta taatcttatc acagtccact taatgaagtt
     3061 tggttagatt tcagtgaaaa ttatcttcca gggtagttcc cccccccgaa tgggggttgt
     3121 accacaatta gtatatatgg tgcagaattt catgcaaatg aggtgtgcca gcagtgtgat
     3181 aatttaaacg tatttaaaga aaaacaaaag gatgaatgca caaacttgct gctgcttaga
     3241 tcactgcagc ttctaggacc cagtttcttt tactgatttc aaaacaaaac aaaaacaaac
     3301 aaaaaataat aaaaaagttg tgcctgaaat gaatcttgtt ttttttataa gtagccgcct
     3361 ggttcctgtg tcctgtaaaa agtacaggca cttgaccctt ggtgtagctt ctgttcggct
     3421 ttatatcatg ggaaaggatt ggtctgattt cttggccctc atcttgaatt ggccacgtac
     3481 agggtccctg gccagtggac tgaaggcttt gtctaagatg acaagggtca gctcagggga
     3541 tgtgggggag ggtgttttat cttccccgtt gtcgtttgag gttttgatct tctctgggta
     3601 aagaggccat ttatctttgt aaacacgtta acactttttc tttctccagt tttctgttaa
     3661 tggcgaaaga atggaagcga ataaagtttt actgattttt ga
//
LOCUS       XM_032603158            4100 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cold shock domain containing E1 (CSDE1),
            transcript variant X3, mRNA.
ACCESSION   XM_032603158
VERSION     XM_032603158.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4100
                     /gene="CSDE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 79 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739061"
     CDS             552..2855
                     /gene="CSDE1"
                     /codon_start=1
                     /product="cold shock domain-containing protein E1 isoform
                     X2"
                     /protein_id="XP_032459049.1"
                     /db_xref="GeneID:116739061"
                     /translation="MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSE
                     RQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERING
                     QEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARYQGVVC
                     AMKDAFGFIERGDIVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLP
                     QGTVIFEDISIEHFEGTVTKVIPKVPSKTQNDPLPGRIKVDFVIPKELPFGDKDTKSK
                     VTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKC
                     VDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSH
                     SDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSN
                     SPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHD
                     KEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIY
                     SGKVIRPLRSVDPTQTEYQGMIEIMDEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQ
                     LCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQA
                     GDEVEFSVIFNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLM
                     VLRQPRGPDNSMGFGAERKIRQAGVID"
     misc_feature    627..821
                     /gene="CSDE1"
                     /note="Ribosomal protein S1-like RNA-binding domain. Found
                     in a wide variety of RNA-associated proteins. Originally
                     identified in S1 ribosomal protein. This superfamily also
                     contains the Cold Shock Domain (CSD), which is a homolog
                     of the S1 domain. Both domains...; Region: S1_like;
                     cl09927"
                     /db_xref="CDD:471952"
     misc_feature    1017..1202
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(1032..1034,1053..1055,1086..1088,1170..1172)
                     /gene="CSDE1"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:239905"
     misc_feature    order(1047..1064,1083..1094)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    1506..1697
                     /gene="CSDE1"
                     /note="Cold shock protein domain; Region: CSP; smart00357"
                     /db_xref="CDD:214633"
     misc_feature    2019..2204
                     /gene="CSDE1"
                     /note="Ribosomal protein S1-like RNA-binding domain. Found
                     in a wide variety of RNA-associated proteins. Originally
                     identified in S1 ribosomal protein. This superfamily also
                     contains the Cold Shock Domain (CSD), which is a homolog
                     of the S1 domain. Both domains...; Region: S1_like;
                     cl09927"
                     /db_xref="CDD:471952"
     misc_feature    order(2046..2063,2082..2093)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    2478..2672
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    2724..2816
                     /gene="CSDE1"
                     /note="SUZ-C motif; Region: SUZ-C; pfam12901"
                     /db_xref="CDD:463745"
ORIGIN      
        1 gtacgctccc cccccttcct gtgcacgcgc tcgaagcccg caactctcgc gagagaagcg
       61 agatttattc ctacgtaccg ggccgtgctg cttatggcgg cgctggagag ggggcgctga
      121 gctgttgggt atgaagtgta acagaacaga ctttaccacc tgaaactgct gcttcaagtt
      181 cagatcaggc aaggaacaaa cctcgaaaca accaacaaga ccaaagaaga gtacacttaa
      241 gttgaagaca caacacttga tctgaaacaa gaagtttgtg cctactcaac agctttgaaa
      301 gagcacttcc caacgctgct agtagtcttt gttttcttca gtgctgtact gtgagattgc
      361 ctggtgcagc agcagttgta ttctttatta gcttgatagg tcattttctc tcgcacgcgc
      421 gctctctctc tcttttcttt tttttttttt ttttttttta acaatagcaa ctttcatcct
      481 ttgaaacgtg tgctgaaaaa gaagaatcag caaatactac tgaaagtgca atatttgatt
      541 atcactgcga gatgagcttt gatccaaatc ttctccacaa caatgggcat aatgggtacc
      601 ccaatggtac ttcagcagca ctgcgtgaaa ctggggttat tgaaaaactg ctaacctctt
      661 atggatttat tcagtgttca gaacgtcaag ctagactttt cttccactgt tcacagtata
      721 atggcaacct gcaggactta aaagtaggag atgatgttga atttgaagta tcatctgacc
      781 ggcggactgg gaagcccatt gctgttaaac tggtgaagat aaaacaagaa atcctccctg
      841 aagaacgaat taatggacaa gaagtgtttt atctgactta cacccctgaa gatgttgaag
      901 ggaatgttca gctggaaact ggagataaaa taaactttgt aattgataac aataaacata
      961 ctggtgctgt aagtgctcgt aatattatgc tgttgaaaaa gaaacaagct cgctatcagg
     1021 gagtagtttg tgccatgaag gatgcgtttg gttttattga aagaggtgat attgtaaagg
     1081 agatattctt tcactatagt gaatttaagg gtgacttaga aaccttgcag cctggagatg
     1141 acgtggaatt cacaatcaag gacagaaatg gtaaagaagt tgcaacagat gtcagactat
     1201 tgcctcaagg aacagtcatt tttgaagata tcagcattga acattttgaa ggaactgtaa
     1261 ccaaagttat cccaaaagta cccagtaaaa cccagaatga cccattgcca ggacgcatca
     1321 aagttgattt tgtgattcct aaagaacttc cctttggaga taaagatacg aaatccaagg
     1381 tgaccctgct ggaaggtgac cacgttaggt ttaatatttc aacagaccgt cgtgacaaat
     1441 tagaacgagc aaccaacata gaagttctgt caaatacatt tcagttcact aatgaagcca
     1501 gagaaatggg tgtaattgct gccatgagag atggttttgg tttcatcaaa tgtgtggatc
     1561 gtgatgctcg tatgttcttc cacttcagtg aaattctgga tgggaaccag ctccatattg
     1621 cagatgaagt agagtttact gtggttcctg atatgctctc tgcccaaaga aatcatgcta
     1681 ttaggattaa aaaacttccc aagggcacgg tttcgttcca ctcccattca gatcatcgtt
     1741 ttctgggcac cgtagaaaaa gaagccactt tttccaatcc taaaaccact agcccaaata
     1801 aaggcaaaga aaaggaggct gaggatggta ttattgctta tgatgattgt ggggtgaaat
     1861 tgactattgc ttttcaagcc aaggatgtgg aaggatctaa ttctcctcag ataggagaca
     1921 aggttgaatt tagtattagt gacaaacaga ggcctggaca gcagattgca acttgtgtgc
     1981 gactcttagg tcgtaattcc aactccaaga ggctcttggg ttatgtggca actttgaagg
     2041 ataattttgg atttattgaa acagccaatc atgataagga aatctttttc cattacagtg
     2101 agttctctgg tgatgttgat agcctggaac tgggggacat ggtcgagtac agcttgtcca
     2161 aaggaaaagg caacaaagtc agtgcagaaa aagtgaacaa aacacactca gtgaatggca
     2221 ttactgagga agctgatccc accatctact ctggtaaagt cattcgcccc ttgaggagtg
     2281 tcgatccaac acagactgag taccaaggaa tgattgagat catggacgaa ggggatatga
     2341 aaggtgaggt ctatccattt ggcatagttg ggatggccaa caaaggggat tgcctacaga
     2401 aaggggagag cgtcaagttc cagttgtgtg tcttgggcca aaatgcacag actatggcct
     2461 acaacatcac acccctgcgt agggccacag tggagtgtgt gaaagatcag tttggcttca
     2521 ttaactatga agtaggagat agcaagaagc tctttttcca tgtgaaagaa gttcaggatg
     2581 gcattgagct acaggcagga gatgaggtgg aattctcagt gatttttaat cagcgcactg
     2641 gcaagtgcag tgcttgtaat gtttggcgag tctgcgaggg ccccaaggct gttgcagctc
     2701 cacgacctga taggttggtc aatcgcttga agaacatcac cctggatgat gccagtgctc
     2761 ctcgcctaat ggttcttcgt cagccaaggg gaccagataa ctcaatggga tttggtgccg
     2821 aaagaaagat ccgtcaagct ggtgtcattg actaaccaca tccacaaagc acatcattaa
     2881 tccactatga tcaagttggg gggattctgg tgaagggttc tgaatatctc cctcttcatc
     2941 cctcccaaaa tctggaatac ttattctatt gagctgttac accagtttta acaccttcct
     3001 cgtgttatgt ttaaaaaaat aaataaattt aagaaaacca ttttaaaatt atgcacagtt
     3061 gcagcctgga aaacttaagg tggcgcctta tagaatcaat tttaggagct ttatttggtg
     3121 catttaacgc aactggtaat tgcaaaatcc acttctgcct gtgtaagtga aaaatataga
     3181 ctgttacctt gttggcccta tgaaattctg cacttgatac ttagtatatc tactctacct
     3241 tcattacttt tggcaagatg ttctgcctta ggactcagtt gcattctttt tccttttctg
     3301 ttcattatgc tttaattctg aggaccatat gatggtagaa tatattaaaa attacaaaaa
     3361 tttgtatagg caaaccagtt ctttaagttg atggccaaat gttaaaatgt tatttttcat
     3421 atcatttata atcttatcac agtccactta atgaagtttg gttagatttc agtgaaaatt
     3481 atcttccagg gtagttcccc cccccgaatg ggggttgtac cacaattagt atatatggtg
     3541 cagaatttca tgcaaatgag gtgtgccagc agtgtgataa tttaaacgta tttaaagaaa
     3601 aacaaaagga tgaatgcaca aacttgctgc tgcttagatc actgcagctt ctaggaccca
     3661 gtttctttta ctgatttcaa aacaaaacaa aaacaaacaa aaaataataa aaaagttgtg
     3721 cctgaaatga atcttgtttt ttttataagt agccgcctgg ttcctgtgtc ctgtaaaaag
     3781 tacaggcact tgacccttgg tgtagcttct gttcggcttt atatcatggg aaaggattgg
     3841 tctgatttct tggccctcat cttgaattgg ccacgtacag ggtccctggc cagtggactg
     3901 aaggctttgt ctaagatgac aagggtcagc tcaggggatg tgggggaggg tgttttatct
     3961 tccccgttgt cgtttgaggt tttgatcttc tctgggtaaa gaggccattt atctttgtaa
     4021 acacgttaac actttttctt tctccagttt tctgttaatg gcgaaagaat ggaagcgaat
     4081 aaagttttac tgatttttga
//
LOCUS       XM_032603165            4661 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cold shock domain containing E1 (CSDE1),
            transcript variant X4, mRNA.
ACCESSION   XM_032603165
VERSION     XM_032603165.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4661
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4661
                     /gene="CSDE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 73 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739061"
     CDS             1113..3416
                     /gene="CSDE1"
                     /codon_start=1
                     /product="cold shock domain-containing protein E1 isoform
                     X2"
                     /protein_id="XP_032459056.1"
                     /db_xref="GeneID:116739061"
                     /translation="MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSE
                     RQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERING
                     QEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARYQGVVC
                     AMKDAFGFIERGDIVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLP
                     QGTVIFEDISIEHFEGTVTKVIPKVPSKTQNDPLPGRIKVDFVIPKELPFGDKDTKSK
                     VTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKC
                     VDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSH
                     SDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSN
                     SPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHD
                     KEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIY
                     SGKVIRPLRSVDPTQTEYQGMIEIMDEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQ
                     LCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQA
                     GDEVEFSVIFNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLM
                     VLRQPRGPDNSMGFGAERKIRQAGVID"
     misc_feature    1188..1382
                     /gene="CSDE1"
                     /note="Ribosomal protein S1-like RNA-binding domain. Found
                     in a wide variety of RNA-associated proteins. Originally
                     identified in S1 ribosomal protein. This superfamily also
                     contains the Cold Shock Domain (CSD), which is a homolog
                     of the S1 domain. Both domains...; Region: S1_like;
                     cl09927"
                     /db_xref="CDD:471952"
     misc_feature    1578..1763
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(1593..1595,1614..1616,1647..1649,1731..1733)
                     /gene="CSDE1"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:239905"
     misc_feature    order(1608..1625,1644..1655)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    2067..2258
                     /gene="CSDE1"
                     /note="Cold shock protein domain; Region: CSP; smart00357"
                     /db_xref="CDD:214633"
     misc_feature    2580..2765
                     /gene="CSDE1"
                     /note="Ribosomal protein S1-like RNA-binding domain. Found
                     in a wide variety of RNA-associated proteins. Originally
                     identified in S1 ribosomal protein. This superfamily also
                     contains the Cold Shock Domain (CSD), which is a homolog
                     of the S1 domain. Both domains...; Region: S1_like;
                     cl09927"
                     /db_xref="CDD:471952"
     misc_feature    order(2607..2624,2643..2654)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    3039..3233
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    3285..3377
                     /gene="CSDE1"
                     /note="SUZ-C motif; Region: SUZ-C; pfam12901"
                     /db_xref="CDD:463745"
ORIGIN      
        1 agactggaag agctggaggc ataggagagg ggcctattct gactctgaac cctgtggtgt
       61 cttggccatc acctgcttgg atctgactac gagtaccaga gcgcagtgcg gcaatggcgc
      121 ttcctttgtg tatggactga gaccccgctc catctaactg cttagagaca cctcctttcc
      181 tcggcacatc tggcacggta gtgcggccga attgtcatcc ttacttccat tcacctagag
      241 ctgtttatct tgggtctcaa cacccaacct tcctgtctag tcctcccctt cggcttcttg
      301 aggaagagaa ccagccccta aacttaggca catggctctc acccttctaa tcctggtgtt
      361 agggcgaact cggtgagaac tcagtggagt tctccttact ccctctctgg ttcttctagt
      421 gtaagagccc ggcccatatt gtgcaatgaa aggcatggct tcgtcattct gtgtagaatt
      481 agttttttag agccctggtc gtagacactt tagaggttct taccatccgc tgtatcataa
      541 gtaggaactc ttagtgctac ggttcttttt gctttaaggt tttcctttag aaacacccag
      601 tagctcctct cttgcctgac aagtgaggca gggaaccctc tctaaaaaca gcctacaatc
      661 cgcaaataca aaagctgaac gttgtttgag tatgaagtgt aacagaacag actttaccac
      721 ctgaaactgc tgcttcaagt tcagatcagg caaggaacaa acctcgaaac aaccaacaag
      781 accaaagaag agtacactta agttgaagac acaacacttg atctgaaaca agaagtttgt
      841 gcctactcaa cagctttgaa agagcacttc ccaacgctgc tagtagtctt tgttttcttc
      901 agtgctgtac tgtgagattg cctggtgcag cagcagttgt attctttatt agcttgatag
      961 gtcattttct ctcgcacgcg cgctctctct ctcttttctt tttttttttt tttttttttt
     1021 aacaatagca actttcatcc tttgaaacgt gtgctgaaaa agaagaatca gcaaatacta
     1081 ctgaaagtgc aatatttgat tatcactgcg agatgagctt tgatccaaat cttctccaca
     1141 acaatgggca taatgggtac cccaatggta cttcagcagc actgcgtgaa actggggtta
     1201 ttgaaaaact gctaacctct tatggattta ttcagtgttc agaacgtcaa gctagacttt
     1261 tcttccactg ttcacagtat aatggcaacc tgcaggactt aaaagtagga gatgatgttg
     1321 aatttgaagt atcatctgac cggcggactg ggaagcccat tgctgttaaa ctggtgaaga
     1381 taaaacaaga aatcctccct gaagaacgaa ttaatggaca agaagtgttt tatctgactt
     1441 acacccctga agatgttgaa gggaatgttc agctggaaac tggagataaa ataaactttg
     1501 taattgataa caataaacat actggtgctg taagtgctcg taatattatg ctgttgaaaa
     1561 agaaacaagc tcgctatcag ggagtagttt gtgccatgaa ggatgcgttt ggttttattg
     1621 aaagaggtga tattgtaaag gagatattct ttcactatag tgaatttaag ggtgacttag
     1681 aaaccttgca gcctggagat gacgtggaat tcacaatcaa ggacagaaat ggtaaagaag
     1741 ttgcaacaga tgtcagacta ttgcctcaag gaacagtcat ttttgaagat atcagcattg
     1801 aacattttga aggaactgta accaaagtta tcccaaaagt acccagtaaa acccagaatg
     1861 acccattgcc aggacgcatc aaagttgatt ttgtgattcc taaagaactt ccctttggag
     1921 ataaagatac gaaatccaag gtgaccctgc tggaaggtga ccacgttagg tttaatattt
     1981 caacagaccg tcgtgacaaa ttagaacgag caaccaacat agaagttctg tcaaatacat
     2041 ttcagttcac taatgaagcc agagaaatgg gtgtaattgc tgccatgaga gatggttttg
     2101 gtttcatcaa atgtgtggat cgtgatgctc gtatgttctt ccacttcagt gaaattctgg
     2161 atgggaacca gctccatatt gcagatgaag tagagtttac tgtggttcct gatatgctct
     2221 ctgcccaaag aaatcatgct attaggatta aaaaacttcc caagggcacg gtttcgttcc
     2281 actcccattc agatcatcgt tttctgggca ccgtagaaaa agaagccact ttttccaatc
     2341 ctaaaaccac tagcccaaat aaaggcaaag aaaaggaggc tgaggatggt attattgctt
     2401 atgatgattg tggggtgaaa ttgactattg cttttcaagc caaggatgtg gaaggatcta
     2461 attctcctca gataggagac aaggttgaat ttagtattag tgacaaacag aggcctggac
     2521 agcagattgc aacttgtgtg cgactcttag gtcgtaattc caactccaag aggctcttgg
     2581 gttatgtggc aactttgaag gataattttg gatttattga aacagccaat catgataagg
     2641 aaatcttttt ccattacagt gagttctctg gtgatgttga tagcctggaa ctgggggaca
     2701 tggtcgagta cagcttgtcc aaaggaaaag gcaacaaagt cagtgcagaa aaagtgaaca
     2761 aaacacactc agtgaatggc attactgagg aagctgatcc caccatctac tctggtaaag
     2821 tcattcgccc cttgaggagt gtcgatccaa cacagactga gtaccaagga atgattgaga
     2881 tcatggacga aggggatatg aaaggtgagg tctatccatt tggcatagtt gggatggcca
     2941 acaaagggga ttgcctacag aaaggggaga gcgtcaagtt ccagttgtgt gtcttgggcc
     3001 aaaatgcaca gactatggcc tacaacatca cacccctgcg tagggccaca gtggagtgtg
     3061 tgaaagatca gtttggcttc attaactatg aagtaggaga tagcaagaag ctctttttcc
     3121 atgtgaaaga agttcaggat ggcattgagc tacaggcagg agatgaggtg gaattctcag
     3181 tgatttttaa tcagcgcact ggcaagtgca gtgcttgtaa tgtttggcga gtctgcgagg
     3241 gccccaaggc tgttgcagct ccacgacctg ataggttggt caatcgcttg aagaacatca
     3301 ccctggatga tgccagtgct cctcgcctaa tggttcttcg tcagccaagg ggaccagata
     3361 actcaatggg atttggtgcc gaaagaaaga tccgtcaagc tggtgtcatt gactaaccac
     3421 atccacaaag cacatcatta atccactatg atcaagttgg ggggattctg gtgaagggtt
     3481 ctgaatatct ccctcttcat ccctcccaaa atctggaata cttattctat tgagctgtta
     3541 caccagtttt aacaccttcc tcgtgttatg tttaaaaaaa taaataaatt taagaaaacc
     3601 attttaaaat tatgcacagt tgcagcctgg aaaacttaag gtggcgcctt atagaatcaa
     3661 ttttaggagc tttatttggt gcatttaacg caactggtaa ttgcaaaatc cacttctgcc
     3721 tgtgtaagtg aaaaatatag actgttacct tgttggccct atgaaattct gcacttgata
     3781 cttagtatat ctactctacc ttcattactt ttggcaagat gttctgcctt aggactcagt
     3841 tgcattcttt ttccttttct gttcattatg ctttaattct gaggaccata tgatggtaga
     3901 atatattaaa aattacaaaa atttgtatag gcaaaccagt tctttaagtt gatggccaaa
     3961 tgttaaaatg ttatttttca tatcatttat aatcttatca cagtccactt aatgaagttt
     4021 ggttagattt cagtgaaaat tatcttccag ggtagttccc ccccccgaat gggggttgta
     4081 ccacaattag tatatatggt gcagaatttc atgcaaatga ggtgtgccag cagtgtgata
     4141 atttaaacgt atttaaagaa aaacaaaagg atgaatgcac aaacttgctg ctgcttagat
     4201 cactgcagct tctaggaccc agtttctttt actgatttca aaacaaaaca aaaacaaaca
     4261 aaaaataata aaaaagttgt gcctgaaatg aatcttgttt tttttataag tagccgcctg
     4321 gttcctgtgt cctgtaaaaa gtacaggcac ttgacccttg gtgtagcttc tgttcggctt
     4381 tatatcatgg gaaaggattg gtctgatttc ttggccctca tcttgaattg gccacgtaca
     4441 gggtccctgg ccagtggact gaaggctttg tctaagatga caagggtcag ctcaggggat
     4501 gtgggggagg gtgttttatc ttccccgttg tcgtttgagg ttttgatctt ctctgggtaa
     4561 agaggccatt tatctttgta aacacgttaa cactttttct ttctccagtt ttctgttaat
     4621 ggcgaaagaa tggaagcgaa taaagtttta ctgatttttg a
//
LOCUS       XM_032603174            3609 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cold shock domain containing E1 (CSDE1),
            transcript variant X5, mRNA.
ACCESSION   XM_032603174
VERSION     XM_032603174.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3609
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3609
                     /gene="CSDE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 62 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739061"
     CDS             61..2364
                     /gene="CSDE1"
                     /codon_start=1
                     /product="cold shock domain-containing protein E1 isoform
                     X2"
                     /protein_id="XP_032459065.1"
                     /db_xref="GeneID:116739061"
                     /translation="MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSE
                     RQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERING
                     QEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARYQGVVC
                     AMKDAFGFIERGDIVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLP
                     QGTVIFEDISIEHFEGTVTKVIPKVPSKTQNDPLPGRIKVDFVIPKELPFGDKDTKSK
                     VTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKC
                     VDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSH
                     SDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSN
                     SPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHD
                     KEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIY
                     SGKVIRPLRSVDPTQTEYQGMIEIMDEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQ
                     LCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQA
                     GDEVEFSVIFNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLM
                     VLRQPRGPDNSMGFGAERKIRQAGVID"
     misc_feature    136..330
                     /gene="CSDE1"
                     /note="Ribosomal protein S1-like RNA-binding domain. Found
                     in a wide variety of RNA-associated proteins. Originally
                     identified in S1 ribosomal protein. This superfamily also
                     contains the Cold Shock Domain (CSD), which is a homolog
                     of the S1 domain. Both domains...; Region: S1_like;
                     cl09927"
                     /db_xref="CDD:471952"
     misc_feature    526..711
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(541..543,562..564,595..597,679..681)
                     /gene="CSDE1"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:239905"
     misc_feature    order(556..573,592..603)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    1015..1206
                     /gene="CSDE1"
                     /note="Cold shock protein domain; Region: CSP; smart00357"
                     /db_xref="CDD:214633"
     misc_feature    1528..1713
                     /gene="CSDE1"
                     /note="Ribosomal protein S1-like RNA-binding domain. Found
                     in a wide variety of RNA-associated proteins. Originally
                     identified in S1 ribosomal protein. This superfamily also
                     contains the Cold Shock Domain (CSD), which is a homolog
                     of the S1 domain. Both domains...; Region: S1_like;
                     cl09927"
                     /db_xref="CDD:471952"
     misc_feature    order(1555..1572,1591..1602)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    1987..2181
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    2233..2325
                     /gene="CSDE1"
                     /note="SUZ-C motif; Region: SUZ-C; pfam12901"
                     /db_xref="CDD:463745"
ORIGIN      
        1 cctacgtacc gggccgtgct gcttatggcg gcgctggaga gggggcgctg agctgttggg
       61 atgagctttg atccaaatct tctccacaac aatgggcata atgggtaccc caatggtact
      121 tcagcagcac tgcgtgaaac tggggttatt gaaaaactgc taacctctta tggatttatt
      181 cagtgttcag aacgtcaagc tagacttttc ttccactgtt cacagtataa tggcaacctg
      241 caggacttaa aagtaggaga tgatgttgaa tttgaagtat catctgaccg gcggactggg
      301 aagcccattg ctgttaaact ggtgaagata aaacaagaaa tcctccctga agaacgaatt
      361 aatggacaag aagtgtttta tctgacttac acccctgaag atgttgaagg gaatgttcag
      421 ctggaaactg gagataaaat aaactttgta attgataaca ataaacatac tggtgctgta
      481 agtgctcgta atattatgct gttgaaaaag aaacaagctc gctatcaggg agtagtttgt
      541 gccatgaagg atgcgtttgg ttttattgaa agaggtgata ttgtaaagga gatattcttt
      601 cactatagtg aatttaaggg tgacttagaa accttgcagc ctggagatga cgtggaattc
      661 acaatcaagg acagaaatgg taaagaagtt gcaacagatg tcagactatt gcctcaagga
      721 acagtcattt ttgaagatat cagcattgaa cattttgaag gaactgtaac caaagttatc
      781 ccaaaagtac ccagtaaaac ccagaatgac ccattgccag gacgcatcaa agttgatttt
      841 gtgattccta aagaacttcc ctttggagat aaagatacga aatccaaggt gaccctgctg
      901 gaaggtgacc acgttaggtt taatatttca acagaccgtc gtgacaaatt agaacgagca
      961 accaacatag aagttctgtc aaatacattt cagttcacta atgaagccag agaaatgggt
     1021 gtaattgctg ccatgagaga tggttttggt ttcatcaaat gtgtggatcg tgatgctcgt
     1081 atgttcttcc acttcagtga aattctggat gggaaccagc tccatattgc agatgaagta
     1141 gagtttactg tggttcctga tatgctctct gcccaaagaa atcatgctat taggattaaa
     1201 aaacttccca agggcacggt ttcgttccac tcccattcag atcatcgttt tctgggcacc
     1261 gtagaaaaag aagccacttt ttccaatcct aaaaccacta gcccaaataa aggcaaagaa
     1321 aaggaggctg aggatggtat tattgcttat gatgattgtg gggtgaaatt gactattgct
     1381 tttcaagcca aggatgtgga aggatctaat tctcctcaga taggagacaa ggttgaattt
     1441 agtattagtg acaaacagag gcctggacag cagattgcaa cttgtgtgcg actcttaggt
     1501 cgtaattcca actccaagag gctcttgggt tatgtggcaa ctttgaagga taattttgga
     1561 tttattgaaa cagccaatca tgataaggaa atctttttcc attacagtga gttctctggt
     1621 gatgttgata gcctggaact gggggacatg gtcgagtaca gcttgtccaa aggaaaaggc
     1681 aacaaagtca gtgcagaaaa agtgaacaaa acacactcag tgaatggcat tactgaggaa
     1741 gctgatccca ccatctactc tggtaaagtc attcgcccct tgaggagtgt cgatccaaca
     1801 cagactgagt accaaggaat gattgagatc atggacgaag gggatatgaa aggtgaggtc
     1861 tatccatttg gcatagttgg gatggccaac aaaggggatt gcctacagaa aggggagagc
     1921 gtcaagttcc agttgtgtgt cttgggccaa aatgcacaga ctatggccta caacatcaca
     1981 cccctgcgta gggccacagt ggagtgtgtg aaagatcagt ttggcttcat taactatgaa
     2041 gtaggagata gcaagaagct ctttttccat gtgaaagaag ttcaggatgg cattgagcta
     2101 caggcaggag atgaggtgga attctcagtg atttttaatc agcgcactgg caagtgcagt
     2161 gcttgtaatg tttggcgagt ctgcgagggc cccaaggctg ttgcagctcc acgacctgat
     2221 aggttggtca atcgcttgaa gaacatcacc ctggatgatg ccagtgctcc tcgcctaatg
     2281 gttcttcgtc agccaagggg accagataac tcaatgggat ttggtgccga aagaaagatc
     2341 cgtcaagctg gtgtcattga ctaaccacat ccacaaagca catcattaat ccactatgat
     2401 caagttgggg ggattctggt gaagggttct gaatatctcc ctcttcatcc ctcccaaaat
     2461 ctggaatact tattctattg agctgttaca ccagttttaa caccttcctc gtgttatgtt
     2521 taaaaaaata aataaattta agaaaaccat tttaaaatta tgcacagttg cagcctggaa
     2581 aacttaaggt ggcgccttat agaatcaatt ttaggagctt tatttggtgc atttaacgca
     2641 actggtaatt gcaaaatcca cttctgcctg tgtaagtgaa aaatatagac tgttaccttg
     2701 ttggccctat gaaattctgc acttgatact tagtatatct actctacctt cattactttt
     2761 ggcaagatgt tctgccttag gactcagttg cattcttttt ccttttctgt tcattatgct
     2821 ttaattctga ggaccatatg atggtagaat atattaaaaa ttacaaaaat ttgtataggc
     2881 aaaccagttc tttaagttga tggccaaatg ttaaaatgtt atttttcata tcatttataa
     2941 tcttatcaca gtccacttaa tgaagtttgg ttagatttca gtgaaaatta tcttccaggg
     3001 tagttccccc ccccgaatgg gggttgtacc acaattagta tatatggtgc agaatttcat
     3061 gcaaatgagg tgtgccagca gtgtgataat ttaaacgtat ttaaagaaaa acaaaaggat
     3121 gaatgcacaa acttgctgct gcttagatca ctgcagcttc taggacccag tttcttttac
     3181 tgatttcaaa acaaaacaaa aacaaacaaa aaataataaa aaagttgtgc ctgaaatgaa
     3241 tcttgttttt tttataagta gccgcctggt tcctgtgtcc tgtaaaaagt acaggcactt
     3301 gacccttggt gtagcttctg ttcggcttta tatcatggga aaggattggt ctgatttctt
     3361 ggccctcatc ttgaattggc cacgtacagg gtccctggcc agtggactga aggctttgtc
     3421 taagatgaca agggtcagct caggggatgt gggggagggt gttttatctt ccccgttgtc
     3481 gtttgaggtt ttgatcttct ctgggtaaag aggccattta tctttgtaaa cacgttaaca
     3541 ctttttcttt ctccagtttt ctgttaatgg cgaaagaatg gaagcgaata aagttttact
     3601 gatttttga
//
LOCUS       XM_032603183            3802 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cold shock domain containing E1 (CSDE1),
            transcript variant X6, mRNA.
ACCESSION   XM_032603183
VERSION     XM_032603183.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3802
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3802
                     /gene="CSDE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 57 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739061"
     CDS             16..2550
                     /gene="CSDE1"
                     /codon_start=1
                     /product="cold shock domain-containing protein E1 isoform
                     X3"
                     /protein_id="XP_032459074.1"
                     /db_xref="GeneID:116739061"
                     /translation="MENVFTVSSDPHPPPTAPPSLSLPLSSSSTSSGTKKQKRTPTYQ
                     RSMSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQY
                     NGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERINGQVVCAVPHNLES
                     KSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVS
                     ARNIMLLKKKQARYQGVVCAMKDAFGFIERGDIVKEIFFHYSEFKGDLETLQPGDDVE
                     FTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKTQNDPLPGRIK
                     VDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNE
                     AREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQR
                     NHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYD
                     DCGVKLTIAFQAKDVEGSNSPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLL
                     GYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEK
                     VNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIMDEGDMKGEVYPFGI
                     VGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGD
                     SKKLFFHVKEVQDGIELQAGDEVEFSVIFNQRTGKCSACNVWRVCEGPKAVAAPRPDR
                     LVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID"
     misc_feature    229..423
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    712..897
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(727..729,748..750,781..783,865..867)
                     /gene="CSDE1"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:239905"
     misc_feature    order(742..759,778..789)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    1201..1392
                     /gene="CSDE1"
                     /note="Cold shock protein domain; Region: CSP; smart00357"
                     /db_xref="CDD:214633"
     misc_feature    1714..1899
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(1741..1758,1777..1788)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    2173..2367
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    2419..2511
                     /gene="CSDE1"
                     /note="SUZ-C motif; Region: SUZ-C; pfam12901"
                     /db_xref="CDD:463745"
ORIGIN      
        1 tcacagctgt ttgagatgga gaacgttttt actgtgtcat cagatcctca tccccctcct
       61 acagcccctc cttcactttc tttaccttta tcttcatctt ctacctcatc tgggactaaa
      121 aaacaaaaga ggacccccac gtatcagaga tctatgagct ttgatccaaa tcttctccac
      181 aacaatgggc ataatgggta ccccaatggt acttcagcag cactgcgtga aactggggtt
      241 attgaaaaac tgctaacctc ttatggattt attcagtgtt cagaacgtca agctagactt
      301 ttcttccact gttcacagta taatggcaac ctgcaggact taaaagtagg agatgatgtt
      361 gaatttgaag tatcatctga ccggcggact gggaagccca ttgctgttaa actggtgaag
      421 ataaaacaag aaatcctccc tgaagaacga attaatggac aagttgtgtg cgctgttcct
      481 cacaacttag agagtaaatc tccagctgcc ccgggtcaga gtccaacagg gagtgtatgc
      541 tacgaacgta atggggaagt gttttatctg acttacaccc ctgaagatgt tgaagggaat
      601 gttcagctgg aaactggaga taaaataaac tttgtaattg ataacaataa acatactggt
      661 gctgtaagtg ctcgtaatat tatgctgttg aaaaagaaac aagctcgcta tcagggagta
      721 gtttgtgcca tgaaggatgc gtttggtttt attgaaagag gtgatattgt aaaggagata
      781 ttctttcact atagtgaatt taagggtgac ttagaaacct tgcagcctgg agatgacgtg
      841 gaattcacaa tcaaggacag aaatggtaaa gaagttgcaa cagatgtcag actattgcct
      901 caaggaacag tcatttttga agatatcagc attgaacatt ttgaaggaac tgtaaccaaa
      961 gttatcccaa aagtacccag taaaacccag aatgacccat tgccaggacg catcaaagtt
     1021 gattttgtga ttcctaaaga acttcccttt ggagataaag atacgaaatc caaggtgacc
     1081 ctgctggaag gtgaccacgt taggtttaat atttcaacag accgtcgtga caaattagaa
     1141 cgagcaacca acatagaagt tctgtcaaat acatttcagt tcactaatga agccagagaa
     1201 atgggtgtaa ttgctgccat gagagatggt tttggtttca tcaaatgtgt ggatcgtgat
     1261 gctcgtatgt tcttccactt cagtgaaatt ctggatggga accagctcca tattgcagat
     1321 gaagtagagt ttactgtggt tcctgatatg ctctctgccc aaagaaatca tgctattagg
     1381 attaaaaaac ttcccaaggg cacggtttcg ttccactccc attcagatca tcgttttctg
     1441 ggcaccgtag aaaaagaagc cactttttcc aatcctaaaa ccactagccc aaataaaggc
     1501 aaagaaaagg aggctgagga tggtattatt gcttatgatg attgtggggt gaaattgact
     1561 attgcttttc aagccaagga tgtggaagga tctaattctc ctcagatagg agacaaggtt
     1621 gaatttagta ttagtgacaa acagaggcct ggacagcaga ttgcaacttg tgtgcgactc
     1681 ttaggtcgta attccaactc caagaggctc ttgggttatg tggcaacttt gaaggataat
     1741 tttggattta ttgaaacagc caatcatgat aaggaaatct ttttccatta cagtgagttc
     1801 tctggtgatg ttgatagcct ggaactgggg gacatggtcg agtacagctt gtccaaagga
     1861 aaaggcaaca aagtcagtgc agaaaaagtg aacaaaacac actcagtgaa tggcattact
     1921 gaggaagctg atcccaccat ctactctggt aaagtcattc gccccttgag gagtgtcgat
     1981 ccaacacaga ctgagtacca aggaatgatt gagatcatgg acgaagggga tatgaaaggt
     2041 gaggtctatc catttggcat agttgggatg gccaacaaag gggattgcct acagaaaggg
     2101 gagagcgtca agttccagtt gtgtgtcttg ggccaaaatg cacagactat ggcctacaac
     2161 atcacacccc tgcgtagggc cacagtggag tgtgtgaaag atcagtttgg cttcattaac
     2221 tatgaagtag gagatagcaa gaagctcttt ttccatgtga aagaagttca ggatggcatt
     2281 gagctacagg caggagatga ggtggaattc tcagtgattt ttaatcagcg cactggcaag
     2341 tgcagtgctt gtaatgtttg gcgagtctgc gagggcccca aggctgttgc agctccacga
     2401 cctgataggt tggtcaatcg cttgaagaac atcaccctgg atgatgccag tgctcctcgc
     2461 ctaatggttc ttcgtcagcc aaggggacca gataactcaa tgggatttgg tgccgaaaga
     2521 aagatccgtc aagctggtgt cattgactaa ccacatccac aaagcacatc attaatccac
     2581 tatgatcaag ttggggggat tctggtgaag ggttctgaat atctccctct tcatccctcc
     2641 caaaatctgg aatacttatt ctattgagct gttacaccag ttttaacacc ttcctcgtgt
     2701 tatgtttaaa aaaataaata aatttaagaa aaccatttta aaattatgca cagttgcagc
     2761 ctggaaaact taaggtggcg ccttatagaa tcaattttag gagctttatt tggtgcattt
     2821 aacgcaactg gtaattgcaa aatccacttc tgcctgtgta agtgaaaaat atagactgtt
     2881 accttgttgg ccctatgaaa ttctgcactt gatacttagt atatctactc taccttcatt
     2941 acttttggca agatgttctg ccttaggact cagttgcatt ctttttcctt ttctgttcat
     3001 tatgctttaa ttctgaggac catatgatgg tagaatatat taaaaattac aaaaatttgt
     3061 ataggcaaac cagttcttta agttgatggc caaatgttaa aatgttattt ttcatatcat
     3121 ttataatctt atcacagtcc acttaatgaa gtttggttag atttcagtga aaattatctt
     3181 ccagggtagt tccccccccc gaatgggggt tgtaccacaa ttagtatata tggtgcagaa
     3241 tttcatgcaa atgaggtgtg ccagcagtgt gataatttaa acgtatttaa agaaaaacaa
     3301 aaggatgaat gcacaaactt gctgctgctt agatcactgc agcttctagg acccagtttc
     3361 ttttactgat ttcaaaacaa aacaaaaaca aacaaaaaat aataaaaaag ttgtgcctga
     3421 aatgaatctt gtttttttta taagtagccg cctggttcct gtgtcctgta aaaagtacag
     3481 gcacttgacc cttggtgtag cttctgttcg gctttatatc atgggaaagg attggtctga
     3541 tttcttggcc ctcatcttga attggccacg tacagggtcc ctggccagtg gactgaaggc
     3601 tttgtctaag atgacaaggg tcagctcagg ggatgtgggg gagggtgttt tatcttcccc
     3661 gttgtcgttt gaggttttga tcttctctgg gtaaagaggc catttatctt tgtaaacacg
     3721 ttaacacttt ttctttctcc agttttctgt taatggcgaa agaatggaag cgaataaagt
     3781 tttactgatt tttgagacac ta
//
LOCUS       XM_032603192            3709 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cold shock domain containing E1 (CSDE1),
            transcript variant X7, mRNA.
ACCESSION   XM_032603192
VERSION     XM_032603192.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3709
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3709
                     /gene="CSDE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 62 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739061"
     CDS             16..2457
                     /gene="CSDE1"
                     /codon_start=1
                     /product="cold shock domain-containing protein E1 isoform
                     X4"
                     /protein_id="XP_032459083.1"
                     /db_xref="GeneID:116739061"
                     /translation="MENVFTVSSDPHPPPTAPPSLSLPLSSSSTSSGTKKQKRTPTYQ
                     RSMSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQY
                     NGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERINGQEVFYLTYTPED
                     VEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARYQGVVCAMKDAFGFIERG
                     DIVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIE
                     HFEGTVTKVIPKVPSKTQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFN
                     ISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFS
                     EILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKE
                     ATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSNSPQIGDKVEFSI
                     SDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSG
                     DVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVD
                     PTQTEYQGMIEIMDEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMA
                     YNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVIFNQ
                     RTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSM
                     GFGAERKIRQAGVID"
     misc_feature    229..423
                     /gene="CSDE1"
                     /note="Ribosomal protein S1-like RNA-binding domain. Found
                     in a wide variety of RNA-associated proteins. Originally
                     identified in S1 ribosomal protein. This superfamily also
                     contains the Cold Shock Domain (CSD), which is a homolog
                     of the S1 domain. Both domains...; Region: S1_like;
                     cl09927"
                     /db_xref="CDD:471952"
     misc_feature    619..804
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    order(634..636,655..657,688..690,772..774)
                     /gene="CSDE1"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:239905"
     misc_feature    order(649..666,685..696)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    1108..1299
                     /gene="CSDE1"
                     /note="Cold shock protein domain; Region: CSP; smart00357"
                     /db_xref="CDD:214633"
     misc_feature    1621..1806
                     /gene="CSDE1"
                     /note="Ribosomal protein S1-like RNA-binding domain. Found
                     in a wide variety of RNA-associated proteins. Originally
                     identified in S1 ribosomal protein. This superfamily also
                     contains the Cold Shock Domain (CSD), which is a homolog
                     of the S1 domain. Both domains...; Region: S1_like;
                     cl09927"
                     /db_xref="CDD:471952"
     misc_feature    order(1648..1665,1684..1695)
                     /gene="CSDE1"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     misc_feature    2080..2274
                     /gene="CSDE1"
                     /note="'Cold-shock' DNA-binding domain; Region: CSD;
                     pfam00313"
                     /db_xref="CDD:278729"
     misc_feature    2326..2418
                     /gene="CSDE1"
                     /note="SUZ-C motif; Region: SUZ-C; pfam12901"
                     /db_xref="CDD:463745"
ORIGIN      
        1 tcacagctgt ttgagatgga gaacgttttt actgtgtcat cagatcctca tccccctcct
       61 acagcccctc cttcactttc tttaccttta tcttcatctt ctacctcatc tgggactaaa
      121 aaacaaaaga ggacccccac gtatcagaga tctatgagct ttgatccaaa tcttctccac
      181 aacaatgggc ataatgggta ccccaatggt acttcagcag cactgcgtga aactggggtt
      241 attgaaaaac tgctaacctc ttatggattt attcagtgtt cagaacgtca agctagactt
      301 ttcttccact gttcacagta taatggcaac ctgcaggact taaaagtagg agatgatgtt
      361 gaatttgaag tatcatctga ccggcggact gggaagccca ttgctgttaa actggtgaag
      421 ataaaacaag aaatcctccc tgaagaacga attaatggac aagaagtgtt ttatctgact
      481 tacacccctg aagatgttga agggaatgtt cagctggaaa ctggagataa aataaacttt
      541 gtaattgata acaataaaca tactggtgct gtaagtgctc gtaatattat gctgttgaaa
      601 aagaaacaag ctcgctatca gggagtagtt tgtgccatga aggatgcgtt tggttttatt
      661 gaaagaggtg atattgtaaa ggagatattc tttcactata gtgaatttaa gggtgactta
      721 gaaaccttgc agcctggaga tgacgtggaa ttcacaatca aggacagaaa tggtaaagaa
      781 gttgcaacag atgtcagact attgcctcaa ggaacagtca tttttgaaga tatcagcatt
      841 gaacattttg aaggaactgt aaccaaagtt atcccaaaag tacccagtaa aacccagaat
      901 gacccattgc caggacgcat caaagttgat tttgtgattc ctaaagaact tccctttgga
      961 gataaagata cgaaatccaa ggtgaccctg ctggaaggtg accacgttag gtttaatatt
     1021 tcaacagacc gtcgtgacaa attagaacga gcaaccaaca tagaagttct gtcaaataca
     1081 tttcagttca ctaatgaagc cagagaaatg ggtgtaattg ctgccatgag agatggtttt
     1141 ggtttcatca aatgtgtgga tcgtgatgct cgtatgttct tccacttcag tgaaattctg
     1201 gatgggaacc agctccatat tgcagatgaa gtagagttta ctgtggttcc tgatatgctc
     1261 tctgcccaaa gaaatcatgc tattaggatt aaaaaacttc ccaagggcac ggtttcgttc
     1321 cactcccatt cagatcatcg ttttctgggc accgtagaaa aagaagccac tttttccaat
     1381 cctaaaacca ctagcccaaa taaaggcaaa gaaaaggagg ctgaggatgg tattattgct
     1441 tatgatgatt gtggggtgaa attgactatt gcttttcaag ccaaggatgt ggaaggatct
     1501 aattctcctc agataggaga caaggttgaa tttagtatta gtgacaaaca gaggcctgga
     1561 cagcagattg caacttgtgt gcgactctta ggtcgtaatt ccaactccaa gaggctcttg
     1621 ggttatgtgg caactttgaa ggataatttt ggatttattg aaacagccaa tcatgataag
     1681 gaaatctttt tccattacag tgagttctct ggtgatgttg atagcctgga actgggggac
     1741 atggtcgagt acagcttgtc caaaggaaaa ggcaacaaag tcagtgcaga aaaagtgaac
     1801 aaaacacact cagtgaatgg cattactgag gaagctgatc ccaccatcta ctctggtaaa
     1861 gtcattcgcc ccttgaggag tgtcgatcca acacagactg agtaccaagg aatgattgag
     1921 atcatggacg aaggggatat gaaaggtgag gtctatccat ttggcatagt tgggatggcc
     1981 aacaaagggg attgcctaca gaaaggggag agcgtcaagt tccagttgtg tgtcttgggc
     2041 caaaatgcac agactatggc ctacaacatc acacccctgc gtagggccac agtggagtgt
     2101 gtgaaagatc agtttggctt cattaactat gaagtaggag atagcaagaa gctctttttc
     2161 catgtgaaag aagttcagga tggcattgag ctacaggcag gagatgaggt ggaattctca
     2221 gtgattttta atcagcgcac tggcaagtgc agtgcttgta atgtttggcg agtctgcgag
     2281 ggccccaagg ctgttgcagc tccacgacct gataggttgg tcaatcgctt gaagaacatc
     2341 accctggatg atgccagtgc tcctcgccta atggttcttc gtcagccaag gggaccagat
     2401 aactcaatgg gatttggtgc cgaaagaaag atccgtcaag ctggtgtcat tgactaacca
     2461 catccacaaa gcacatcatt aatccactat gatcaagttg gggggattct ggtgaagggt
     2521 tctgaatatc tccctcttca tccctcccaa aatctggaat acttattcta ttgagctgtt
     2581 acaccagttt taacaccttc ctcgtgttat gtttaaaaaa ataaataaat ttaagaaaac
     2641 cattttaaaa ttatgcacag ttgcagcctg gaaaacttaa ggtggcgcct tatagaatca
     2701 attttaggag ctttatttgg tgcatttaac gcaactggta attgcaaaat ccacttctgc
     2761 ctgtgtaagt gaaaaatata gactgttacc ttgttggccc tatgaaattc tgcacttgat
     2821 acttagtata tctactctac cttcattact tttggcaaga tgttctgcct taggactcag
     2881 ttgcattctt tttccttttc tgttcattat gctttaattc tgaggaccat atgatggtag
     2941 aatatattaa aaattacaaa aatttgtata ggcaaaccag ttctttaagt tgatggccaa
     3001 atgttaaaat gttatttttc atatcattta taatcttatc acagtccact taatgaagtt
     3061 tggttagatt tcagtgaaaa ttatcttcca gggtagttcc cccccccgaa tgggggttgt
     3121 accacaatta gtatatatgg tgcagaattt catgcaaatg aggtgtgcca gcagtgtgat
     3181 aatttaaacg tatttaaaga aaaacaaaag gatgaatgca caaacttgct gctgcttaga
     3241 tcactgcagc ttctaggacc cagtttcttt tactgatttc aaaacaaaac aaaaacaaac
     3301 aaaaaataat aaaaaagttg tgcctgaaat gaatcttgtt ttttttataa gtagccgcct
     3361 ggttcctgtg tcctgtaaaa agtacaggca cttgaccctt ggtgtagctt ctgttcggct
     3421 ttatatcatg ggaaaggatt ggtctgattt cttggccctc atcttgaatt ggccacgtac
     3481 agggtccctg gccagtggac tgaaggcttt gtctaagatg acaagggtca gctcagggga
     3541 tgtgggggag ggtgttttat cttccccgtt gtcgtttgag gttttgatct tctctgggta
     3601 aagaggccat ttatctttgt aaacacgtta acactttttc tttctccagt tttctgttaa
     3661 tggcgaaaga atggaagcga ataaagtttt actgattttt gagacacta
//
LOCUS       XM_032603202            4285 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NRAS proto-oncogene, GTPase (NRAS),
            transcript variant X1, mRNA.
ACCESSION   XM_032603202
VERSION     XM_032603202.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4285
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4285
                     /gene="NRAS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 21 long SRA reads, 34
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739088"
     CDS             157..726
                     /gene="NRAS"
                     /codon_start=1
                     /product="GTPase NRas"
                     /protein_id="XP_032459093.1"
                     /db_xref="GeneID:116739088"
                     /translation="MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV
                     VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKR
                     VKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV
                     REIRQYRMKKLNSSDDGTQGCMGLPCVVM"
     misc_feature    163..648
                     /gene="NRAS"
                     /note="Ras GTPase family containing H-Ras,N-Ras and
                     K-Ras4A/4B; Region: H_N_K_Ras_like; cd04138"
                     /db_xref="CDD:133338"
     misc_feature    184..207
                     /gene="NRAS"
                     /note="G1 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    order(187..192,331..336)
                     /gene="NRAS"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:133338"
     misc_feature    order(190..210,238..246,250..252,259..261,334..336,
                     502..507,511..516,589..594)
                     /gene="NRAS"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133338"
     misc_feature    order(205..210,244..252,256..258,265..267,274..279,
                     316..321,325..327,331..339,343..351,355..357,361..369,
                     373..375,460..465,595..597)
                     /gene="NRAS"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:133338"
     misc_feature    order(229..231,265..279)
                     /gene="NRAS"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:133338"
     misc_feature    253..276
                     /gene="NRAS"
                     /note="Switch I region; other site"
                     /db_xref="CDD:133338"
     misc_feature    259..261
                     /gene="NRAS"
                     /note="G2 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    325..336
                     /gene="NRAS"
                     /note="G3 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    331..387
                     /gene="NRAS"
                     /note="Switch II region; other site"
                     /db_xref="CDD:133338"
     misc_feature    502..513
                     /gene="NRAS"
                     /note="G4 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    589..597
                     /gene="NRAS"
                     /note="G5 box; other site"
                     /db_xref="CDD:133338"
ORIGIN      
        1 gggcgccgac tgattgcgta gcgggcgggg ccggaagtgc cgctccctgg tgggggctgt
       61 tcatggcggt tccggggtct ccaacatttt tcccggttgt ggtccaaatc tgtccgaagc
      121 ggaggcagtg gagcttgagg ttcttgctgg tgtgaaatga ctgagtacaa actggtggtg
      181 gttggagcag gtggtgttgg gaaaagcgca ctgacaatcc agctgatcca gaaccacttt
      241 gtagatgaat atgatcccac catagaggat tcttaccgaa aacaggtggt tatagatggt
      301 gaaacctgtc tgttggacat actggataca gctggacaag aggagtacag tgccatgaga
      361 gaccaataca tgaggacagg cgaaggcttc ctttgtgtat ttgccatcaa taatagcaaa
      421 tcatttgcag atattaacct ctacagggaa cagattaagc gtgtaaaaga ctcagatgat
      481 gtacctatgg tgctagtagg aaacaagtgt gatttgccaa caaggacagt tgacacaaaa
      541 caagcccatg aactggccaa gagttatggg attccattca ttgaaacctc agccaagacc
      601 agacagggtg ttgaagatgc cttttacaca ctggtaagag aaatacgtca gtaccgaatg
      661 aaaaaactca acagcagtga tgatgggact caaggttgta tgggattgcc atgtgtagtg
      721 atgtaacaag atacttttaa agttctagca tcagaaaaga gccaccgtca agctgcactg
      781 acaccttggt cctgacttcc ctggaggaga agtattgctg ttgctatctt cagtctcaca
      841 aagaagctcc tgcgatttcc ccaactctca gtagatcagt ataatattct ctatttgaga
      901 agttctcaga gtaactacct cctcacttgg ttgtctgacc agagaaatga acctcttgtt
      961 actcccagta tttctccacc ctgggttctc cccgagcaca cacaaaccaa cctccaccac
     1021 cccaggtttt tcatctgaaa agcaattaat gctctgaaac agagaaccaa actgtagaaa
     1081 catgaaattc tgtagaaaac aatgtcttga gctctgaagt agcaactgct ggtgattttt
     1141 ttttcctttt tactgttgaa cttggaacta tgttggtttt tggagaaatg tcataaatta
     1201 ctgttttgct gagaatatag ttaatgttgc tgtttggttt gtttgtaatg ttatcagcta
     1261 tattctataa actggcatct gctctgtatt cagaaataca aaagtgaata ctgacttttt
     1321 tgagtctatc ctcgtcttct cgactttctt gtaattaaat ctgactttca caatgaagtg
     1381 cctttttcct ggaagcggtt tgtagacttc ctttacaata cttcagtgga atagatgtct
     1441 tagaaactgt tgtactgttg tacaagtgat tgtgtgagat gtgtctgtga cccgtctagc
     1501 tttgagggaa agctatacca atatgatagc agatgccatt tcttacgtgt atgaagttga
     1561 ttttctagag acctgttttg gggctctccc aagagaaagg tgagactata aatgattagg
     1621 aataattttg cttacttttt acctaatctc cacttttttt ttgttttggt agtttactgc
     1681 ctgcaaaatg tatataattt gtttcttcta gcttactgat aatctaatgt tcaatgaact
     1741 tccattcata tttaaatttg ggtcatagca gaaagtctat atttgcaggt gttcaaaatt
     1801 ataaaattag atgcaggttt atttaatagc tgtgatcaat gattctcaag cctcaaatat
     1861 gttaataggc aaattttcac tgcatatcat ggtaattatt catgtatata attgccctca
     1921 gtccccttct caccccatcc cctgtccttc gccccatagc agtggcttga ttatttcagt
     1981 tgagtaaagc gtggtgctaa tagaccaggg tcacagtttc aaaacttcag tgagccagtt
     2041 agcatcacag agagagaaat tcttccacat ttgctcattg caccattaat tccagctagt
     2101 agttttgcca gatgcatgtg gttagtcctg caaggagaga agaggtcagt tagcacaaat
     2161 tcttaaccat gactggaaaa acttgttatc ctgagaaggg tcagcttaga agtctttata
     2221 aataaaggat ctagactctg tttttagcta catggaaacc aaattaagcc aatatttttt
     2281 ctgtttttga gaatgaggat acctcagatc aaaattttaa aaattttctt tattcataat
     2341 gttctttgag ggtttaaaac gggatgttga ttaattagtc tgggcatacc agataagctg
     2401 atgagtttgt tcttgttctg aacaagaagt agcctttgga ttggaattgc tgtttgagaa
     2461 gggaatagag aatataatta atagttatga ggatttggag gcttggcttt tccatttgca
     2521 gataatatcc tgataattct aatgagtaat agacttggat aacttttgat gaaagaatac
     2581 ttccaaaacg accacttcct gttctcgtct tctaatgtgt aaatacttac tgaggtcctc
     2641 ttctaatatg aattttcact tattaagcaa atttcacatt gccttgaaat gaattcggaa
     2701 gagaagaaaa aaacataatg tacccagaga atgaaaaacc cagagagttg tgctccttcg
     2761 tgttaattct gagagctttc acagtccacg ccggtaaaca gaaactctct gccactttgc
     2821 ttctgctcct cttggagcat tgctctcatt ttcttgagga tagatggaga cttgtcacct
     2881 cagttgtcat tgtcttcctc ttcttctttt gtctatgtga ctgactgtgt gattcttatg
     2941 aatgtcaaat tggggggaaa aaataactca ttttagactc ttgtgcccat taccctcgta
     3001 tgtttgtatc ttttagtttt ctcaagtatg ttctaagcac agaagtatct aaatggggcc
     3061 aaaattcaga cttgaaaatg ttcttttaat agcttcttaa agagtcacac tttggtatga
     3121 attttggcac agtagagtga caaactgaca gttaaaacgc tgaataactt cagttagtgt
     3181 ggtatcagat agtttttaga atatgtttgt gattgctgaa aacaattaca gtttacctca
     3241 aaatctggaa gtctctttcc ccaagttaag tgcctggcca gctgtcataa attacatatt
     3301 actttatgtc tgtttgtttc ttaaaggttg tacattcaag attgtgaaaa taaggtgttc
     3361 tgtatgaagg ctgccatgcc tgtgtgtaaa tgaatctgtt gagtgctgta tttgctccaa
     3421 cagcttacta tagaatgcta cttggtcata tcgtacttac tacagttttc acttcaggag
     3481 tgtaataggt aaaattatcc ttaatctgta ttgtagtggg ccccatgttt agtctttcat
     3541 catcctttaa actgctgtga attttttgtc ttgacttgaa agcaaggata gagaaacact
     3601 ttaaagagat agtctggttg ttttccattc cggaatttgt gagcatagtc atgttttgct
     3661 ttacatttac agtcatgaac tcttaagctg gcagctacaa ccaagaacca aaagagggtg
     3721 cattctgctt cttgtaattc atctctgcta ataaattata agaagcaagg ataattaaat
     3781 tagagaaagt atttaatttg ggtggtttct ataaacaaga gactataatt cttgtacatt
     3841 attttcatct ttgctgtttc tttaagaaac ctaatgtgcc acgaaattat tttaaggtgt
     3901 ttcttataag aattgttttt aaagtgttct tgttatcaga gtaattgtag atatatttca
     3961 aaatataact ggtaattttt aaaggcctga gtactgacct aagaagcaat tgtatgaatt
     4021 ctctggaggc aagggaggat ctcagtggaa gttgtatgac ttttatattt ctgtgccatt
     4081 aaatataggt aaaaaatgtc aattgtgcag ttctgctgtt taaacaggaa ctattggcct
     4141 ccttggccct aaatgaaagg gctgatattt taagttgact attttattgt aaattaatcc
     4201 attctaattt ttaaaacttt ggttgaatat ttttcttgtt aaatgtttga aaaataaaaa
     4261 ctggaagttc tttgcttagt cataa
//
LOCUS       XM_032603209            4279 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NRAS proto-oncogene, GTPase (NRAS),
            transcript variant X2, mRNA.
ACCESSION   XM_032603209
VERSION     XM_032603209.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4279
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4279
                     /gene="NRAS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 34 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116739088"
     CDS             133..702
                     /gene="NRAS"
                     /codon_start=1
                     /product="GTPase NRas"
                     /protein_id="XP_032459100.1"
                     /db_xref="GeneID:116739088"
                     /translation="MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV
                     VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKR
                     VKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV
                     REIRQYRMKKLNSSDDGTQGCMGLPCVVM"
     misc_feature    139..624
                     /gene="NRAS"
                     /note="Ras GTPase family containing H-Ras,N-Ras and
                     K-Ras4A/4B; Region: H_N_K_Ras_like; cd04138"
                     /db_xref="CDD:133338"
     misc_feature    160..183
                     /gene="NRAS"
                     /note="G1 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    order(163..168,307..312)
                     /gene="NRAS"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:133338"
     misc_feature    order(166..186,214..222,226..228,235..237,310..312,
                     478..483,487..492,565..570)
                     /gene="NRAS"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133338"
     misc_feature    order(181..186,220..228,232..234,241..243,250..255,
                     292..297,301..303,307..315,319..327,331..333,337..345,
                     349..351,436..441,571..573)
                     /gene="NRAS"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:133338"
     misc_feature    order(205..207,241..255)
                     /gene="NRAS"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:133338"
     misc_feature    229..252
                     /gene="NRAS"
                     /note="Switch I region; other site"
                     /db_xref="CDD:133338"
     misc_feature    235..237
                     /gene="NRAS"
                     /note="G2 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    301..312
                     /gene="NRAS"
                     /note="G3 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    307..363
                     /gene="NRAS"
                     /note="Switch II region; other site"
                     /db_xref="CDD:133338"
     misc_feature    478..489
                     /gene="NRAS"
                     /note="G4 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    565..573
                     /gene="NRAS"
                     /note="G5 box; other site"
                     /db_xref="CDD:133338"
ORIGIN      
        1 gcggggccgg aagtgccgct ccctggtggg ggctgttcat ggcggttccg gggtctccaa
       61 catttttccc ggttgtggtc caaatctgtc cgaagcggag gcagtggagc ttgaggttct
      121 tgctggtgtg aaatgactga gtacaaactg gtggtggttg gagcaggtgg tgttgggaaa
      181 agcgcactga caatccagct gatccagaac cactttgtag atgaatatga tcccaccata
      241 gaggattctt accgaaaaca ggtggttata gatggtgaaa cctgtctgtt ggacatactg
      301 gatacagctg gacaagagga gtacagtgcc atgagagacc aatacatgag gacaggcgaa
      361 ggcttccttt gtgtatttgc catcaataat agcaaatcat ttgcagatat taacctctac
      421 agggaacaga ttaagcgtgt aaaagactca gatgatgtac ctatggtgct agtaggaaac
      481 aagtgtgatt tgccaacaag gacagttgac acaaaacaag cccatgaact ggccaagagt
      541 tatgggattc cattcattga aacctcagcc aagaccagac agggtgttga agatgccttt
      601 tacacactgg taagagaaat acgtcagtac cgaatgaaaa aactcaacag cagtgatgat
      661 gggactcaag gttgtatggg attgccatgt gtagtgatgt aacaagatac ttttaaagtt
      721 ctagcatcag aaaagagcca ccgtcaagat tccatcttta tttcagctgc actgacacct
      781 tggtcctgac ttccctggag gagaagtatt gctgttgcta tcttcagtct cacaaagaag
      841 ctcctgcgat ttccccaact ctcagtagat cagtataata ttctctattt gagaagttct
      901 cagagtaact acctcctcac ttggttgtct gaccagagaa atgaacctct tgttactccc
      961 agtatttctc caccctgggt tctccccgag cacacacaaa ccaacctcca ccaccccagg
     1021 tttttcatct gaaaagcaat taatgctctg aaacagagaa ccaaactgta gaaacatgaa
     1081 attctgtaga aaacaatgtc ttgagctctg aagtagcaac tgctggtgat ttttttttcc
     1141 tttttactgt tgaacttgga actatgttgg tttttggaga aatgtcataa attactgttt
     1201 tgctgagaat atagttaatg ttgctgtttg gtttgtttgt aatgttatca gctatattct
     1261 ataaactggc atctgctctg tattcagaaa tacaaaagtg aatactgact tttttgagtc
     1321 tatcctcgtc ttctcgactt tcttgtaatt aaatctgact ttcacaatga agtgcctttt
     1381 tcctggaagc ggtttgtaga cttcctttac aatacttcag tggaatagat gtcttagaaa
     1441 ctgttgtact gttgtacaag tgattgtgtg agatgtgtct gtgacccgtc tagctttgag
     1501 ggaaagctat accaatatga tagcagatgc catttcttac gtgtatgaag ttgattttct
     1561 agagacctgt tttggggctc tcccaagaga aaggtgagac tataaatgat taggaataat
     1621 tttgcttact ttttacctaa tctccacttt ttttttgttt tggtagttta ctgcctgcaa
     1681 aatgtatata atttgtttct tctagcttac tgataatcta atgttcaatg aacttccatt
     1741 catatttaaa tttgggtcat agcagaaagt ctatatttgc aggtgttcaa aattataaaa
     1801 ttagatgcag gtttatttaa tagctgtgat caatgattct caagcctcaa atatgttaat
     1861 aggcaaattt tcactgcata tcatggtaat tattcatgta tataattgcc ctcagtcccc
     1921 ttctcacccc atcccctgtc cttcgcccca tagcagtggc ttgattattt cagttgagta
     1981 aagcgtggtg ctaatagacc agggtcacag tttcaaaact tcagtgagcc agttagcatc
     2041 acagagagag aaattcttcc acatttgctc attgcaccat taattccagc tagtagtttt
     2101 gccagatgca tgtggttagt cctgcaagga gagaagaggt cagttagcac aaattcttaa
     2161 ccatgactgg aaaaacttgt tatcctgaga agggtcagct tagaagtctt tataaataaa
     2221 ggatctagac tctgttttta gctacatgga aaccaaatta agccaatatt ttttctgttt
     2281 ttgagaatga ggatacctca gatcaaaatt ttaaaaattt tctttattca taatgttctt
     2341 tgagggttta aaacgggatg ttgattaatt agtctgggca taccagataa gctgatgagt
     2401 ttgttcttgt tctgaacaag aagtagcctt tggattggaa ttgctgtttg agaagggaat
     2461 agagaatata attaatagtt atgaggattt ggaggcttgg cttttccatt tgcagataat
     2521 atcctgataa ttctaatgag taatagactt ggataacttt tgatgaaaga atacttccaa
     2581 aacgaccact tcctgttctc gtcttctaat gtgtaaatac ttactgaggt cctcttctaa
     2641 tatgaatttt cacttattaa gcaaatttca cattgccttg aaatgaattc ggaagagaag
     2701 aaaaaaacat aatgtaccca gagaatgaaa aacccagaga gttgtgctcc ttcgtgttaa
     2761 ttctgagagc tttcacagtc cacgccggta aacagaaact ctctgccact ttgcttctgc
     2821 tcctcttgga gcattgctct cattttcttg aggatagatg gagacttgtc acctcagttg
     2881 tcattgtctt cctcttcttc ttttgtctat gtgactgact gtgtgattct tatgaatgtc
     2941 aaattggggg gaaaaaataa ctcattttag actcttgtgc ccattaccct cgtatgtttg
     3001 tatcttttag ttttctcaag tatgttctaa gcacagaagt atctaaatgg ggccaaaatt
     3061 cagacttgaa aatgttcttt taatagcttc ttaaagagtc acactttggt atgaattttg
     3121 gcacagtaga gtgacaaact gacagttaaa acgctgaata acttcagtta gtgtggtatc
     3181 agatagtttt tagaatatgt ttgtgattgc tgaaaacaat tacagtttac ctcaaaatct
     3241 ggaagtctct ttccccaagt taagtgcctg gccagctgtc ataaattaca tattacttta
     3301 tgtctgtttg tttcttaaag gttgtacatt caagattgtg aaaataaggt gttctgtatg
     3361 aaggctgcca tgcctgtgtg taaatgaatc tgttgagtgc tgtatttgct ccaacagctt
     3421 actatagaat gctacttggt catatcgtac ttactacagt tttcacttca ggagtgtaat
     3481 aggtaaaatt atccttaatc tgtattgtag tgggccccat gtttagtctt tcatcatcct
     3541 ttaaactgct gtgaattttt tgtcttgact tgaaagcaag gatagagaaa cactttaaag
     3601 agatagtctg gttgttttcc attccggaat ttgtgagcat agtcatgttt tgctttacat
     3661 ttacagtcat gaactcttaa gctggcagct acaaccaaga accaaaagag ggtgcattct
     3721 gcttcttgta attcatctct gctaataaat tataagaagc aaggataatt aaattagaga
     3781 aagtatttaa tttgggtggt ttctataaac aagagactat aattcttgta cattattttc
     3841 atctttgctg tttctttaag aaacctaatg tgccacgaaa ttattttaag gtgtttctta
     3901 taagaattgt ttttaaagtg ttcttgttat cagagtaatt gtagatatat ttcaaaatat
     3961 aactggtaat ttttaaaggc ctgagtactg acctaagaag caattgtatg aattctctgg
     4021 aggcaaggga ggatctcagt ggaagttgta tgacttttat atttctgtgc cattaaatat
     4081 aggtaaaaaa tgtcaattgt gcagttctgc tgtttaaaca ggaactattg gcctccttgg
     4141 ccctaaatga aagggctgat attttaagtt gactatttta ttgtaaatta atccattcta
     4201 atttttaaaa ctttggttga atatttttct tgttaaatgt ttgaaaaata aaaactggaa
     4261 gttctttgct tagtcataa
//
LOCUS       XM_032603216            4630 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NRAS proto-oncogene, GTPase (NRAS),
            transcript variant X3, mRNA.
ACCESSION   XM_032603216
VERSION     XM_032603216.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4630
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4630
                     /gene="NRAS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 34 Proteins,
                     and 89% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116739088"
     CDS             484..1053
                     /gene="NRAS"
                     /codon_start=1
                     /product="GTPase NRas"
                     /protein_id="XP_032459107.1"
                     /db_xref="GeneID:116739088"
                     /translation="MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV
                     VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKR
                     VKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV
                     REIRQYRMKKLNSSDDGTQGCMGLPCVVM"
     misc_feature    490..975
                     /gene="NRAS"
                     /note="Ras GTPase family containing H-Ras,N-Ras and
                     K-Ras4A/4B; Region: H_N_K_Ras_like; cd04138"
                     /db_xref="CDD:133338"
     misc_feature    511..534
                     /gene="NRAS"
                     /note="G1 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    order(514..519,658..663)
                     /gene="NRAS"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:133338"
     misc_feature    order(517..537,565..573,577..579,586..588,661..663,
                     829..834,838..843,916..921)
                     /gene="NRAS"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133338"
     misc_feature    order(532..537,571..579,583..585,592..594,601..606,
                     643..648,652..654,658..666,670..678,682..684,688..696,
                     700..702,787..792,922..924)
                     /gene="NRAS"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:133338"
     misc_feature    order(556..558,592..606)
                     /gene="NRAS"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:133338"
     misc_feature    580..603
                     /gene="NRAS"
                     /note="Switch I region; other site"
                     /db_xref="CDD:133338"
     misc_feature    586..588
                     /gene="NRAS"
                     /note="G2 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    652..663
                     /gene="NRAS"
                     /note="G3 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    658..714
                     /gene="NRAS"
                     /note="Switch II region; other site"
                     /db_xref="CDD:133338"
     misc_feature    829..840
                     /gene="NRAS"
                     /note="G4 box; other site"
                     /db_xref="CDD:133338"
     misc_feature    916..924
                     /gene="NRAS"
                     /note="G5 box; other site"
                     /db_xref="CDD:133338"
ORIGIN      
        1 ggagcatgct gatgactcct tgttgccagg aatcgagcgg aatctacgag ctggagacaa
       61 aggccctggg cggggggtcc ttcgttttga gccctacggc ggagctcttt ggagacaggc
      121 gggatagaga gaaggggaga cggtctggat gccgcccccc agagctcaga agatttaaag
      181 gagtagggag gggggttttc tttaccttag gctgagggcg gggcccaagg gctattgaaa
      241 aatagacgag ggtgggggta gctagaagac tagtccagaa ttctgagatc cacagtaacc
      301 tgcaagtatt tttgcactcc tgaatcactt tgagaaccaa gtggcgatga acgtgtacgg
      361 aaccaataca tttcagactc tggttttagt tactgttgat tacagaaagc tttgaagtac
      421 tgtagatgtg gttcgacagt taaccctaat tgctgctttc ccacaggttc ttgctggtgt
      481 gaaatgactg agtacaaact ggtggtggtt ggagcaggtg gtgttgggaa aagcgcactg
      541 acaatccagc tgatccagaa ccactttgta gatgaatatg atcccaccat agaggattct
      601 taccgaaaac aggtggttat agatggtgaa acctgtctgt tggacatact ggatacagct
      661 ggacaagagg agtacagtgc catgagagac caatacatga ggacaggcga aggcttcctt
      721 tgtgtatttg ccatcaataa tagcaaatca tttgcagata ttaacctcta cagggaacag
      781 attaagcgtg taaaagactc agatgatgta cctatggtgc tagtaggaaa caagtgtgat
      841 ttgccaacaa ggacagttga cacaaaacaa gcccatgaac tggccaagag ttatgggatt
      901 ccattcattg aaacctcagc caagaccaga cagggtgttg aagatgcctt ttacacactg
      961 gtaagagaaa tacgtcagta ccgaatgaaa aaactcaaca gcagtgatga tgggactcaa
     1021 ggttgtatgg gattgccatg tgtagtgatg taacaagata cttttaaagt tctagcatca
     1081 gaaaagagcc accgtcaaga ttccatcttt atttcagctg cactgacacc ttggtcctga
     1141 cttccctgga ggagaagtat tgctgttgct atcttcagtc tcacaaagaa gctcctgcga
     1201 tttccccaac tctcagtaga tcagtataat attctctatt tgagaagttc tcagagtaac
     1261 tacctcctca cttggttgtc tgaccagaga aatgaacctc ttgttactcc cagtatttct
     1321 ccaccctggg ttctccccga gcacacacaa accaacctcc accaccccag gtttttcatc
     1381 tgaaaagcaa ttaatgctct gaaacagaga accaaactgt agaaacatga aattctgtag
     1441 aaaacaatgt cttgagctct gaagtagcaa ctgctggtga tttttttttc ctttttactg
     1501 ttgaacttgg aactatgttg gtttttggag aaatgtcata aattactgtt ttgctgagaa
     1561 tatagttaat gttgctgttt ggtttgtttg taatgttatc agctatattc tataaactgg
     1621 catctgctct gtattcagaa atacaaaagt gaatactgac ttttttgagt ctatcctcgt
     1681 cttctcgact ttcttgtaat taaatctgac tttcacaatg aagtgccttt ttcctggaag
     1741 cggtttgtag acttccttta caatacttca gtggaataga tgtcttagaa actgttgtac
     1801 tgttgtacaa gtgattgtgt gagatgtgtc tgtgacccgt ctagctttga gggaaagcta
     1861 taccaatatg atagcagatg ccatttctta cgtgtatgaa gttgattttc tagagacctg
     1921 ttttggggct ctcccaagag aaaggtgaga ctataaatga ttaggaataa ttttgcttac
     1981 tttttaccta atctccactt tttttttgtt ttggtagttt actgcctgca aaatgtatat
     2041 aatttgtttc ttctagctta ctgataatct aatgttcaat gaacttccat tcatatttaa
     2101 atttgggtca tagcagaaag tctatatttg caggtgttca aaattataaa attagatgca
     2161 ggtttattta atagctgtga tcaatgattc tcaagcctca aatatgttaa taggcaaatt
     2221 ttcactgcat atcatggtaa ttattcatgt atataattgc cctcagtccc cttctcaccc
     2281 catcccctgt ccttcgcccc atagcagtgg cttgattatt tcagttgagt aaagcgtggt
     2341 gctaatagac cagggtcaca gtttcaaaac ttcagtgagc cagttagcat cacagagaga
     2401 gaaattcttc cacatttgct cattgcacca ttaattccag ctagtagttt tgccagatgc
     2461 atgtggttag tcctgcaagg agagaagagg tcagttagca caaattctta accatgactg
     2521 gaaaaacttg ttatcctgag aagggtcagc ttagaagtct ttataaataa aggatctaga
     2581 ctctgttttt agctacatgg aaaccaaatt aagccaatat tttttctgtt tttgagaatg
     2641 aggatacctc agatcaaaat tttaaaaatt ttctttattc ataatgttct ttgagggttt
     2701 aaaacgggat gttgattaat tagtctgggc ataccagata agctgatgag tttgttcttg
     2761 ttctgaacaa gaagtagcct ttggattgga attgctgttt gagaagggaa tagagaatat
     2821 aattaatagt tatgaggatt tggaggcttg gcttttccat ttgcagataa tatcctgata
     2881 attctaatga gtaatagact tggataactt ttgatgaaag aatacttcca aaacgaccac
     2941 ttcctgttct cgtcttctaa tgtgtaaata cttactgagg tcctcttcta atatgaattt
     3001 tcacttatta agcaaatttc acattgcctt gaaatgaatt cggaagagaa gaaaaaaaca
     3061 taatgtaccc agagaatgaa aaacccagag agttgtgctc cttcgtgtta attctgagag
     3121 ctttcacagt ccacgccggt aaacagaaac tctctgccac tttgcttctg ctcctcttgg
     3181 agcattgctc tcattttctt gaggatagat ggagacttgt cacctcagtt gtcattgtct
     3241 tcctcttctt cttttgtcta tgtgactgac tgtgtgattc ttatgaatgt caaattgggg
     3301 ggaaaaaata actcatttta gactcttgtg cccattaccc tcgtatgttt gtatctttta
     3361 gttttctcaa gtatgttcta agcacagaag tatctaaatg gggccaaaat tcagacttga
     3421 aaatgttctt ttaatagctt cttaaagagt cacactttgg tatgaatttt ggcacagtag
     3481 agtgacaaac tgacagttaa aacgctgaat aacttcagtt agtgtggtat cagatagttt
     3541 ttagaatatg tttgtgattg ctgaaaacaa ttacagttta cctcaaaatc tggaagtctc
     3601 tttccccaag ttaagtgcct ggccagctgt cataaattac atattacttt atgtctgttt
     3661 gtttcttaaa ggttgtacat tcaagattgt gaaaataagg tgttctgtat gaaggctgcc
     3721 atgcctgtgt gtaaatgaat ctgttgagtg ctgtatttgc tccaacagct tactatagaa
     3781 tgctacttgg tcatatcgta cttactacag ttttcacttc aggagtgtaa taggtaaaat
     3841 tatccttaat ctgtattgta gtgggcccca tgtttagtct ttcatcatcc tttaaactgc
     3901 tgtgaatttt ttgtcttgac ttgaaagcaa ggatagagaa acactttaaa gagatagtct
     3961 ggttgttttc cattccggaa tttgtgagca tagtcatgtt ttgctttaca tttacagtca
     4021 tgaactctta agctggcagc tacaaccaag aaccaaaaga gggtgcattc tgcttcttgt
     4081 aattcatctc tgctaataaa ttataagaag caaggataat taaattagag aaagtattta
     4141 atttgggtgg tttctataaa caagagacta taattcttgt acattatttt catctttgct
     4201 gtttctttaa gaaacctaat gtgccacgaa attattttaa ggtgtttctt ataagaattg
     4261 tttttaaagt gttcttgtta tcagagtaat tgtagatata tttcaaaata taactggtaa
     4321 tttttaaagg cctgagtact gacctaagaa gcaattgtat gaattctctg gaggcaaggg
     4381 aggatctcag tggaagttgt atgactttta tatttctgtg ccattaaata taggtaaaaa
     4441 atgtcaattg tgcagttctg ctgtttaaac aggaactatt ggcctccttg gccctaaatg
     4501 aaagggctga tattttaagt tgactatttt attgtaaatt aatccattct aatttttaaa
     4561 actttggttg aatatttttc ttgttaaatg tttgaaaaat aaaaactgga agttctttgc
     4621 ttagtcataa
//
LOCUS       XR_004345464             296 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739109
            (LOC116739109), ncRNA.
ACCESSION   XR_004345464
VERSION     XR_004345464.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..296
                     /gene="LOC116739109"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739109"
     ncRNA           1..296
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739109"
                     /product="uncharacterized LOC116739109"
                     /db_xref="GeneID:116739109"
ORIGIN      
        1 agcatgctgt tggaatggaa gctcagaagg catttggctg atggttattt ggaaaggcca
       61 aatcaaaagc atggtggtga ccaggtgctc agtggcagcc cagccacaga tatgcctgtc
      121 cggatttcag aacagagacc agctctccac atcagccgcg gtggggatgc tatcggggcc
      181 gtccagaggt cagcagggga acttctgaac ccttcactgt cgtcttgagg ctaatggaag
      241 ccaggtctct cactattgga cagatctaca ttcaagctac aaatacagaa aggaag
//
LOCUS       XM_032603232            2886 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit B (LRRC8B), transcript variant X1, mRNA.
ACCESSION   XM_032603232
VERSION     XM_032603232.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2886
                     /gene="LRRC8B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739115"
     CDS             298..2730
                     /gene="LRRC8B"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8B
                     isoform X1"
                     /protein_id="XP_032459123.1"
                     /db_xref="GeneID:116739115"
                     /translation="MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGA
                     LQLTQSRVLCCLPCKVEFDNHCAVPWDILKASVNTSSDPGTLLPLPLRIQNDLHRQQY
                     SYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWLHYPSTSSRLEHFVAILHKCF
                     DSPWTTRALSETVAEQSVRPLTLSKSKVLLSSSGCSADVDSNKQSLPYPQPGLESAGI
                     ESPTSSVLDKKEGEQAKAIFEKVKRFRMHVEQKDIIYRVYLKQIIVKVILFVLIITYV
                     PYFLTYITLEIDCSVDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVILYGLTSSYSL
                     WWMLRSSLKQYSFEALREKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVS
                     ENKLKQINLNNEWTVEKLKSKLVKNSQDKIELHLFMLNGLPDNVFELTEIEVLSLELI
                     PEVKLPSAVSQLVNLKELHVYHSSLVVDHPALAFLEENLKILRLKFTEMGKIPRWVFH
                     LKNLKELYLSGCVLPEQVSTMQLEGFQDLKNLRTLYLKSSISRIPQVVTDLLPSLQKL
                     SLDNEGSKLVVLNNLKKMVNLKSLALISCDLERIPHSIFSLNNLHELNLKENNLKTVE
                     EIISFQHLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLH
                     YLDLSYNHLTFIPEEIQYLSNLQYFAVTNNNKWASQQLWSILRAITMTVTPLNGLGSL
                     HQSYEETYLLRMWRNWNSEDSDQTDETFLSDGVVYPNYRKYWGGKGERIVHNIGLRIF
                     GRPYIGKKAYWE"
     misc_feature    298..1299
                     /gene="LRRC8B"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1591..>2436
                     /gene="LRRC8B"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1690..1761
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1762..1830
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1831..1914
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1915..1983
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1984..2055
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2056..2124
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2125..2199
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2200..2268
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2269..2337
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 cagatgagaa aactgatact tagtttacct aagatcaagc agatggtaaa tgacacagtc
       61 agaacttgat cttaaccatc ctgctatact cccttcctcc taagagtgtc aggaattttt
      121 caaatagaaa ctaattgcag agtttccggt tgaccaggca ttcataggaa tgaagacaat
      181 cacagagatg gtgtgtctaa gaaatttcaa aaggtgtagg cctcctgact gaagaacagt
      241 caacttattg gattcatttt ttttcattat atttctgtcc tcctacaagg gaaagtcatg
      301 attacactaa cagagctaaa atgtttagca gacgcccagt cgtcttatca catcctaaaa
      361 ccgtggtggg acgtcttttg gtattacatc accctgatca tgctgctggt ggccgtgctg
      421 gctggagccc tccagctcac acagagcagg gttctgtgct gtcttccgtg taaggtggaa
      481 ttcgacaatc actgcgccgt gccttgggac atcctgaaag ccagcgtgaa cacgtcttcc
      541 gatcccggga ctctgcttcc gctccccctc agaatccaga acgacctcca ccgacagcag
      601 tactcctaca tcgacgccgt ctgttatgag aagcagctcc actggttcgc aaagttcttt
      661 ccctacctgg tgctcttgca cacgctcatc tttgcagcct gcagcaactt ttggctgcac
      721 taccccagta ccagttccag gctcgagcat tttgtggcca tccttcacaa gtgcttcgat
      781 tctccatgga ccacccgtgc cctgtcagag acggtggctg agcagtcagt gaggcccctg
      841 acgctctcca agtccaaggt tttgctttct tcctcagggt gctcagctga tgttgattcc
      901 aacaagcagt cattgcccta cccgcagcct ggcttagagt cagctggcat agaaagccca
      961 acttctagcg tcctggacaa gaaggagggc gaacaggcca aagccatctt tgaaaaagtg
     1021 aaaaggttcc gcatgcacgt ggaacagaag gatatcattt atagagtgta tctgaagcag
     1081 ataatagtca aagtcatttt gtttgtcctc atcataactt acgttccgta ttttttaacc
     1141 tacattactc ttgaaattga ctgttcagtg gatgtgcagg cttttactgg atataagcgc
     1201 taccagtgtg tctactcctt ggcagaaata tttaaggtcc tggcttcatt ttatgtcatc
     1261 ttggttatac tttatggtct tacctcctcc tacagcttgt ggtggatgct gcggagttct
     1321 ctgaagcaat attcttttga ggcgctgaga gaaaaaagca actacagtga catcccggat
     1381 gtcaagaatg acttcgcctt cattctgcat ctggctgatc agtatgatcc tctttactcc
     1441 aaacgcttct ccatattcct gtcggaggtc agtgagaaca aactgaaaca gatcaacctc
     1501 aacaatgaat ggacggtcga gaaactgaaa agtaagcttg tgaaaaattc ccaggacaag
     1561 atagaactgc atcttttcat gctaaacggt cttccagaca atgtctttga gctgacagaa
     1621 attgaagtgc taagcctgga gctgatccct gaggtcaagc tgccttctgc ggtctcgcag
     1681 ctggtcaacc tcaaggagct tcacgtgtac cattcgtctc tggtggtcga ccatcctgcc
     1741 ctggcctttc tagaggagaa tttaaaaatc ctccgcctga aatttactga aatggggaaa
     1801 attccacgct gggtatttca tctgaagaat ctcaaggagc tttacctgtc aggctgtgtt
     1861 ctacctgagc aggtgagtac catgcagttg gagggctttc aggacttgaa aaacctgagg
     1921 accctctact tgaagagcag catctcccgg atcccacaag tcgttacaga cctcctgcct
     1981 tcgctgcaga agttgtccct cgataacgag gggagcaagc tggttgtatt gaacaacttg
     2041 aaaaagatgg tcaatctgaa aagcctggcg ctgatcagct gcgacctgga acgcattcca
     2101 cactccattt tcagtctgaa caatttgcat gagttaaacc ttaaagaaaa taaccttaaa
     2161 actgtggaag agatcattag ctttcagcat ctccagaatc tttcctgctt aaagttgtgg
     2221 cacaataaca tagcttatat tccggcccag attggggcat tatctaatct agagcaactc
     2281 tctttggacc ataataacat tgagaatctg cccctgcagc ttttcctatg caccaaacta
     2341 cattatttgg atctaagcta taaccacctg accttcattc cagaagaaat acagtatctg
     2401 agtaatttgc agtactttgc tgtgaccaac aacaacaagt gggctagcca gcagttgtgg
     2461 agcatcctcc gggccataac gatgactgtg acacctttga atgggttagg atcacttcat
     2521 cagagctatg aagagactta cctgctaaga atgtggagaa actggaactc agaagacagt
     2581 gaccagacag atgaaacgtt cctctctgat ggtgtagtgt atcctaatta taggaagtac
     2641 tggggaggga agggagagag aatagtccac aatattggtc ttcgaatatt tggaagacct
     2701 tacataggaa agaaagctta ttgggagtag ctgtaagtgt tagagcttgg acaagcagga
     2761 gatttctcat ctttccccag aaagctgtcc aaagactgaa tgaacatttg agaagggaga
     2821 agtgattttc ttattaataa aactgtccag atataaattg tcaaccactt ggtaggaata
     2881 ttgtta
//
LOCUS       XM_032603240            2916 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit B (LRRC8B), transcript variant X2, mRNA.
ACCESSION   XM_032603240
VERSION     XM_032603240.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2916
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2916
                     /gene="LRRC8B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739115"
     CDS             328..2760
                     /gene="LRRC8B"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8B
                     isoform X1"
                     /protein_id="XP_032459131.1"
                     /db_xref="GeneID:116739115"
                     /translation="MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGA
                     LQLTQSRVLCCLPCKVEFDNHCAVPWDILKASVNTSSDPGTLLPLPLRIQNDLHRQQY
                     SYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWLHYPSTSSRLEHFVAILHKCF
                     DSPWTTRALSETVAEQSVRPLTLSKSKVLLSSSGCSADVDSNKQSLPYPQPGLESAGI
                     ESPTSSVLDKKEGEQAKAIFEKVKRFRMHVEQKDIIYRVYLKQIIVKVILFVLIITYV
                     PYFLTYITLEIDCSVDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVILYGLTSSYSL
                     WWMLRSSLKQYSFEALREKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVS
                     ENKLKQINLNNEWTVEKLKSKLVKNSQDKIELHLFMLNGLPDNVFELTEIEVLSLELI
                     PEVKLPSAVSQLVNLKELHVYHSSLVVDHPALAFLEENLKILRLKFTEMGKIPRWVFH
                     LKNLKELYLSGCVLPEQVSTMQLEGFQDLKNLRTLYLKSSISRIPQVVTDLLPSLQKL
                     SLDNEGSKLVVLNNLKKMVNLKSLALISCDLERIPHSIFSLNNLHELNLKENNLKTVE
                     EIISFQHLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLH
                     YLDLSYNHLTFIPEEIQYLSNLQYFAVTNNNKWASQQLWSILRAITMTVTPLNGLGSL
                     HQSYEETYLLRMWRNWNSEDSDQTDETFLSDGVVYPNYRKYWGGKGERIVHNIGLRIF
                     GRPYIGKKAYWE"
     misc_feature    328..1329
                     /gene="LRRC8B"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1621..>2466
                     /gene="LRRC8B"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1720..1791
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1792..1860
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1861..1944
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1945..2013
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2014..2085
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2086..2154
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2155..2229
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2230..2298
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2299..2367
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 cctggcagcg ctggggcttc ccgctgagcc cgcagcagcc ggcagcaagg aagtgcgggc
       61 gcggggccgc cgccggcgcg cccggagcgg cgcggggcgc accccgcgag gagcgccgga
      121 tcccggggcc ggacgcacgc aggaattttt caaatagaaa ctaattgcag agtttccggt
      181 tgaccaggca ttcataggaa tgaagacaat cacagagatg gtgtgtctaa gaaatttcaa
      241 aaggtgtagg cctcctgact gaagaacagt caacttattg gattcatttt ttttcattat
      301 atttctgtcc tcctacaagg gaaagtcatg attacactaa cagagctaaa atgtttagca
      361 gacgcccagt cgtcttatca catcctaaaa ccgtggtggg acgtcttttg gtattacatc
      421 accctgatca tgctgctggt ggccgtgctg gctggagccc tccagctcac acagagcagg
      481 gttctgtgct gtcttccgtg taaggtggaa ttcgacaatc actgcgccgt gccttgggac
      541 atcctgaaag ccagcgtgaa cacgtcttcc gatcccggga ctctgcttcc gctccccctc
      601 agaatccaga acgacctcca ccgacagcag tactcctaca tcgacgccgt ctgttatgag
      661 aagcagctcc actggttcgc aaagttcttt ccctacctgg tgctcttgca cacgctcatc
      721 tttgcagcct gcagcaactt ttggctgcac taccccagta ccagttccag gctcgagcat
      781 tttgtggcca tccttcacaa gtgcttcgat tctccatgga ccacccgtgc cctgtcagag
      841 acggtggctg agcagtcagt gaggcccctg acgctctcca agtccaaggt tttgctttct
      901 tcctcagggt gctcagctga tgttgattcc aacaagcagt cattgcccta cccgcagcct
      961 ggcttagagt cagctggcat agaaagccca acttctagcg tcctggacaa gaaggagggc
     1021 gaacaggcca aagccatctt tgaaaaagtg aaaaggttcc gcatgcacgt ggaacagaag
     1081 gatatcattt atagagtgta tctgaagcag ataatagtca aagtcatttt gtttgtcctc
     1141 atcataactt acgttccgta ttttttaacc tacattactc ttgaaattga ctgttcagtg
     1201 gatgtgcagg cttttactgg atataagcgc taccagtgtg tctactcctt ggcagaaata
     1261 tttaaggtcc tggcttcatt ttatgtcatc ttggttatac tttatggtct tacctcctcc
     1321 tacagcttgt ggtggatgct gcggagttct ctgaagcaat attcttttga ggcgctgaga
     1381 gaaaaaagca actacagtga catcccggat gtcaagaatg acttcgcctt cattctgcat
     1441 ctggctgatc agtatgatcc tctttactcc aaacgcttct ccatattcct gtcggaggtc
     1501 agtgagaaca aactgaaaca gatcaacctc aacaatgaat ggacggtcga gaaactgaaa
     1561 agtaagcttg tgaaaaattc ccaggacaag atagaactgc atcttttcat gctaaacggt
     1621 cttccagaca atgtctttga gctgacagaa attgaagtgc taagcctgga gctgatccct
     1681 gaggtcaagc tgccttctgc ggtctcgcag ctggtcaacc tcaaggagct tcacgtgtac
     1741 cattcgtctc tggtggtcga ccatcctgcc ctggcctttc tagaggagaa tttaaaaatc
     1801 ctccgcctga aatttactga aatggggaaa attccacgct gggtatttca tctgaagaat
     1861 ctcaaggagc tttacctgtc aggctgtgtt ctacctgagc aggtgagtac catgcagttg
     1921 gagggctttc aggacttgaa aaacctgagg accctctact tgaagagcag catctcccgg
     1981 atcccacaag tcgttacaga cctcctgcct tcgctgcaga agttgtccct cgataacgag
     2041 gggagcaagc tggttgtatt gaacaacttg aaaaagatgg tcaatctgaa aagcctggcg
     2101 ctgatcagct gcgacctgga acgcattcca cactccattt tcagtctgaa caatttgcat
     2161 gagttaaacc ttaaagaaaa taaccttaaa actgtggaag agatcattag ctttcagcat
     2221 ctccagaatc tttcctgctt aaagttgtgg cacaataaca tagcttatat tccggcccag
     2281 attggggcat tatctaatct agagcaactc tctttggacc ataataacat tgagaatctg
     2341 cccctgcagc ttttcctatg caccaaacta cattatttgg atctaagcta taaccacctg
     2401 accttcattc cagaagaaat acagtatctg agtaatttgc agtactttgc tgtgaccaac
     2461 aacaacaagt gggctagcca gcagttgtgg agcatcctcc gggccataac gatgactgtg
     2521 acacctttga atgggttagg atcacttcat cagagctatg aagagactta cctgctaaga
     2581 atgtggagaa actggaactc agaagacagt gaccagacag atgaaacgtt cctctctgat
     2641 ggtgtagtgt atcctaatta taggaagtac tggggaggga agggagagag aatagtccac
     2701 aatattggtc ttcgaatatt tggaagacct tacataggaa agaaagctta ttgggagtag
     2761 ctgtaagtgt tagagcttgg acaagcagga gatttctcat ctttccccag aaagctgtcc
     2821 aaagactgaa tgaacatttg agaagggaga agtgattttc ttattaataa aactgtccag
     2881 atataaattg tcaaccactt ggtaggaata ttgtta
//
LOCUS       XM_032603247            2879 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit B (LRRC8B), transcript variant X3, mRNA.
ACCESSION   XM_032603247
VERSION     XM_032603247.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2879
                     /gene="LRRC8B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739115"
     CDS             291..2723
                     /gene="LRRC8B"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8B
                     isoform X1"
                     /protein_id="XP_032459138.1"
                     /db_xref="GeneID:116739115"
                     /translation="MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGA
                     LQLTQSRVLCCLPCKVEFDNHCAVPWDILKASVNTSSDPGTLLPLPLRIQNDLHRQQY
                     SYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWLHYPSTSSRLEHFVAILHKCF
                     DSPWTTRALSETVAEQSVRPLTLSKSKVLLSSSGCSADVDSNKQSLPYPQPGLESAGI
                     ESPTSSVLDKKEGEQAKAIFEKVKRFRMHVEQKDIIYRVYLKQIIVKVILFVLIITYV
                     PYFLTYITLEIDCSVDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVILYGLTSSYSL
                     WWMLRSSLKQYSFEALREKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVS
                     ENKLKQINLNNEWTVEKLKSKLVKNSQDKIELHLFMLNGLPDNVFELTEIEVLSLELI
                     PEVKLPSAVSQLVNLKELHVYHSSLVVDHPALAFLEENLKILRLKFTEMGKIPRWVFH
                     LKNLKELYLSGCVLPEQVSTMQLEGFQDLKNLRTLYLKSSISRIPQVVTDLLPSLQKL
                     SLDNEGSKLVVLNNLKKMVNLKSLALISCDLERIPHSIFSLNNLHELNLKENNLKTVE
                     EIISFQHLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLH
                     YLDLSYNHLTFIPEEIQYLSNLQYFAVTNNNKWASQQLWSILRAITMTVTPLNGLGSL
                     HQSYEETYLLRMWRNWNSEDSDQTDETFLSDGVVYPNYRKYWGGKGERIVHNIGLRIF
                     GRPYIGKKAYWE"
     misc_feature    291..1292
                     /gene="LRRC8B"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1584..>2429
                     /gene="LRRC8B"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1683..1754
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1755..1823
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1824..1907
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1908..1976
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1977..2048
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2049..2117
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2118..2192
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2193..2261
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2262..2330
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gacgcattca acccaattca aagaaatgca cgataaagca acaagatcct tttcatgtgt
       61 ggaattagca aagactttta tttttaatga tgattcccac atctggaatt tttcaaatag
      121 aaactaattg cagagtttcc ggttgaccag gcattcatag gaatgaagac aatcacagag
      181 atggtgtgtc taagaaattt caaaaggtgt aggcctcctg actgaagaac agtcaactta
      241 ttggattcat tttttttcat tatatttctg tcctcctaca agggaaagtc atgattacac
      301 taacagagct aaaatgttta gcagacgccc agtcgtctta tcacatccta aaaccgtggt
      361 gggacgtctt ttggtattac atcaccctga tcatgctgct ggtggccgtg ctggctggag
      421 ccctccagct cacacagagc agggttctgt gctgtcttcc gtgtaaggtg gaattcgaca
      481 atcactgcgc cgtgccttgg gacatcctga aagccagcgt gaacacgtct tccgatcccg
      541 ggactctgct tccgctcccc ctcagaatcc agaacgacct ccaccgacag cagtactcct
      601 acatcgacgc cgtctgttat gagaagcagc tccactggtt cgcaaagttc tttccctacc
      661 tggtgctctt gcacacgctc atctttgcag cctgcagcaa cttttggctg cactacccca
      721 gtaccagttc caggctcgag cattttgtgg ccatccttca caagtgcttc gattctccat
      781 ggaccacccg tgccctgtca gagacggtgg ctgagcagtc agtgaggccc ctgacgctct
      841 ccaagtccaa ggttttgctt tcttcctcag ggtgctcagc tgatgttgat tccaacaagc
      901 agtcattgcc ctacccgcag cctggcttag agtcagctgg catagaaagc ccaacttcta
      961 gcgtcctgga caagaaggag ggcgaacagg ccaaagccat ctttgaaaaa gtgaaaaggt
     1021 tccgcatgca cgtggaacag aaggatatca tttatagagt gtatctgaag cagataatag
     1081 tcaaagtcat tttgtttgtc ctcatcataa cttacgttcc gtatttttta acctacatta
     1141 ctcttgaaat tgactgttca gtggatgtgc aggcttttac tggatataag cgctaccagt
     1201 gtgtctactc cttggcagaa atatttaagg tcctggcttc attttatgtc atcttggtta
     1261 tactttatgg tcttacctcc tcctacagct tgtggtggat gctgcggagt tctctgaagc
     1321 aatattcttt tgaggcgctg agagaaaaaa gcaactacag tgacatcccg gatgtcaaga
     1381 atgacttcgc cttcattctg catctggctg atcagtatga tcctctttac tccaaacgct
     1441 tctccatatt cctgtcggag gtcagtgaga acaaactgaa acagatcaac ctcaacaatg
     1501 aatggacggt cgagaaactg aaaagtaagc ttgtgaaaaa ttcccaggac aagatagaac
     1561 tgcatctttt catgctaaac ggtcttccag acaatgtctt tgagctgaca gaaattgaag
     1621 tgctaagcct ggagctgatc cctgaggtca agctgccttc tgcggtctcg cagctggtca
     1681 acctcaagga gcttcacgtg taccattcgt ctctggtggt cgaccatcct gccctggcct
     1741 ttctagagga gaatttaaaa atcctccgcc tgaaatttac tgaaatgggg aaaattccac
     1801 gctgggtatt tcatctgaag aatctcaagg agctttacct gtcaggctgt gttctacctg
     1861 agcaggtgag taccatgcag ttggagggct ttcaggactt gaaaaacctg aggaccctct
     1921 acttgaagag cagcatctcc cggatcccac aagtcgttac agacctcctg ccttcgctgc
     1981 agaagttgtc cctcgataac gaggggagca agctggttgt attgaacaac ttgaaaaaga
     2041 tggtcaatct gaaaagcctg gcgctgatca gctgcgacct ggaacgcatt ccacactcca
     2101 ttttcagtct gaacaatttg catgagttaa accttaaaga aaataacctt aaaactgtgg
     2161 aagagatcat tagctttcag catctccaga atctttcctg cttaaagttg tggcacaata
     2221 acatagctta tattccggcc cagattgggg cattatctaa tctagagcaa ctctctttgg
     2281 accataataa cattgagaat ctgcccctgc agcttttcct atgcaccaaa ctacattatt
     2341 tggatctaag ctataaccac ctgaccttca ttccagaaga aatacagtat ctgagtaatt
     2401 tgcagtactt tgctgtgacc aacaacaaca agtgggctag ccagcagttg tggagcatcc
     2461 tccgggccat aacgatgact gtgacacctt tgaatgggtt aggatcactt catcagagct
     2521 atgaagagac ttacctgcta agaatgtgga gaaactggaa ctcagaagac agtgaccaga
     2581 cagatgaaac gttcctctct gatggtgtag tgtatcctaa ttataggaag tactggggag
     2641 ggaagggaga gagaatagtc cacaatattg gtcttcgaat atttggaaga ccttacatag
     2701 gaaagaaagc ttattgggag tagctgtaag tgttagagct tggacaagca ggagatttct
     2761 catctttccc cagaaagctg tccaaagact gaatgaacat ttgagaaggg agaagtgatt
     2821 ttcttattaa taaaactgtc cagatataaa ttgtcaacca cttggtagga atattgtta
//
LOCUS       XM_032603256            3542 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit B (LRRC8B), transcript variant X4, mRNA.
ACCESSION   XM_032603256
VERSION     XM_032603256.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3542
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3542
                     /gene="LRRC8B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739115"
     CDS             298..2715
                     /gene="LRRC8B"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8B
                     isoform X2"
                     /protein_id="XP_032459147.1"
                     /db_xref="GeneID:116739115"
                     /translation="MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGA
                     LQLTQSRVLCCLPCKVEFDNHCAVPWDILKASVNTSSDPGTLLPLPLRIQNDLHRQQY
                     SYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWLHYPSTSSRLEHFVAILHKCF
                     DSPWTTRALSETVAEQSVRPLTLSKSKVLLSSSGCSADVDSNKQSLPYPQPGLESAGI
                     ESPTSSVLDKKEGEQAKAIFEKVKRFRMHVEQKDIIYRVYLKQIIVKVILFVLIITYV
                     PYFLTYITLEIDCSVDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVILYGLTSSYSL
                     WWMLRSSLKQYSFEALREKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVS
                     ENKLKQINLNNEWTVEKLKSKLVKNSQDKIELHLFMLNGLPDNVFELTEIEVLSLELI
                     PEVKLPSAVSQLVNLKELHVYHSSLVVDHPALAFLEENLKILRLKFTEMGKIPRWVFH
                     LKNLKELYLSGCVLPEQVSTMQLEGFQDLKNLRTLYLKSSISRIPQVVTDLLPSLQKL
                     SLDNEGSKLVVLNNLKKMVNLKSLALISCDLERIPHSIFSLNNLHELNLKENNLKTVE
                     EIISFQHLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLH
                     YLDLSYNHLTFIPEEIQYLSNLQYFAVTNNNKWASQQLWSILRAITMTVTPLNGLGSL
                     HQSYEETYLLRMWRNWNSEDSDQTDETFLSDGVVTAHQCCPENDAAATVALARPQNRF
                     FMVSAAL"
     misc_feature    298..1299
                     /gene="LRRC8B"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1591..>2436
                     /gene="LRRC8B"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1690..1761
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1762..1830
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1831..1914
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1915..1983
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1984..2055
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2056..2124
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2125..2199
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2200..2268
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2269..2337
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 cagatgagaa aactgatact tagtttacct aagatcaagc agatggtaaa tgacacagtc
       61 agaacttgat cttaaccatc ctgctatact cccttcctcc taagagtgtc aggaattttt
      121 caaatagaaa ctaattgcag agtttccggt tgaccaggca ttcataggaa tgaagacaat
      181 cacagagatg gtgtgtctaa gaaatttcaa aaggtgtagg cctcctgact gaagaacagt
      241 caacttattg gattcatttt ttttcattat atttctgtcc tcctacaagg gaaagtcatg
      301 attacactaa cagagctaaa atgtttagca gacgcccagt cgtcttatca catcctaaaa
      361 ccgtggtggg acgtcttttg gtattacatc accctgatca tgctgctggt ggccgtgctg
      421 gctggagccc tccagctcac acagagcagg gttctgtgct gtcttccgtg taaggtggaa
      481 ttcgacaatc actgcgccgt gccttgggac atcctgaaag ccagcgtgaa cacgtcttcc
      541 gatcccggga ctctgcttcc gctccccctc agaatccaga acgacctcca ccgacagcag
      601 tactcctaca tcgacgccgt ctgttatgag aagcagctcc actggttcgc aaagttcttt
      661 ccctacctgg tgctcttgca cacgctcatc tttgcagcct gcagcaactt ttggctgcac
      721 taccccagta ccagttccag gctcgagcat tttgtggcca tccttcacaa gtgcttcgat
      781 tctccatgga ccacccgtgc cctgtcagag acggtggctg agcagtcagt gaggcccctg
      841 acgctctcca agtccaaggt tttgctttct tcctcagggt gctcagctga tgttgattcc
      901 aacaagcagt cattgcccta cccgcagcct ggcttagagt cagctggcat agaaagccca
      961 acttctagcg tcctggacaa gaaggagggc gaacaggcca aagccatctt tgaaaaagtg
     1021 aaaaggttcc gcatgcacgt ggaacagaag gatatcattt atagagtgta tctgaagcag
     1081 ataatagtca aagtcatttt gtttgtcctc atcataactt acgttccgta ttttttaacc
     1141 tacattactc ttgaaattga ctgttcagtg gatgtgcagg cttttactgg atataagcgc
     1201 taccagtgtg tctactcctt ggcagaaata tttaaggtcc tggcttcatt ttatgtcatc
     1261 ttggttatac tttatggtct tacctcctcc tacagcttgt ggtggatgct gcggagttct
     1321 ctgaagcaat attcttttga ggcgctgaga gaaaaaagca actacagtga catcccggat
     1381 gtcaagaatg acttcgcctt cattctgcat ctggctgatc agtatgatcc tctttactcc
     1441 aaacgcttct ccatattcct gtcggaggtc agtgagaaca aactgaaaca gatcaacctc
     1501 aacaatgaat ggacggtcga gaaactgaaa agtaagcttg tgaaaaattc ccaggacaag
     1561 atagaactgc atcttttcat gctaaacggt cttccagaca atgtctttga gctgacagaa
     1621 attgaagtgc taagcctgga gctgatccct gaggtcaagc tgccttctgc ggtctcgcag
     1681 ctggtcaacc tcaaggagct tcacgtgtac cattcgtctc tggtggtcga ccatcctgcc
     1741 ctggcctttc tagaggagaa tttaaaaatc ctccgcctga aatttactga aatggggaaa
     1801 attccacgct gggtatttca tctgaagaat ctcaaggagc tttacctgtc aggctgtgtt
     1861 ctacctgagc aggtgagtac catgcagttg gagggctttc aggacttgaa aaacctgagg
     1921 accctctact tgaagagcag catctcccgg atcccacaag tcgttacaga cctcctgcct
     1981 tcgctgcaga agttgtccct cgataacgag gggagcaagc tggttgtatt gaacaacttg
     2041 aaaaagatgg tcaatctgaa aagcctggcg ctgatcagct gcgacctgga acgcattcca
     2101 cactccattt tcagtctgaa caatttgcat gagttaaacc ttaaagaaaa taaccttaaa
     2161 actgtggaag agatcattag ctttcagcat ctccagaatc tttcctgctt aaagttgtgg
     2221 cacaataaca tagcttatat tccggcccag attggggcat tatctaatct agagcaactc
     2281 tctttggacc ataataacat tgagaatctg cccctgcagc ttttcctatg caccaaacta
     2341 cattatttgg atctaagcta taaccacctg accttcattc cagaagaaat acagtatctg
     2401 agtaatttgc agtactttgc tgtgaccaac aacaacaagt gggctagcca gcagttgtgg
     2461 agcatcctcc gggccataac gatgactgtg acacctttga atgggttagg atcacttcat
     2521 cagagctatg aagagactta cctgctaaga atgtggagaa actggaactc agaagacagt
     2581 gaccagacag atgaaacgtt cctctctgat ggtgtagtca ctgcacacca gtgctgtcct
     2641 gaaaatgatg ctgctgctac tgtagccctt gcccgcccac aaaatcggtt cttcatggtt
     2701 tctgctgctt tgtgacacga ggcccacgtc tgagcacctg acagagctta agaatgctca
     2761 cacttgagct gtaagttatc tgggaacaca aggatctttt gttttcagtt cctctagttg
     2821 gaagtgggct ctgcttccca ccaagagtcc caccaagata aggtagggaa ttctcaggac
     2881 atagaagatg tggggcagcc ccccaaatga cagacattca ctgagagggc actccagagt
     2941 ttactccact gaatagtaat aagttttatc acaaaaaaac attaaacatt ttttagcata
     3001 tttttgctgc aggattcctc agagacttta acatatgaac atgcattgtg cttctccaag
     3061 agggagatat ggtgtgcaac gtttgccaca catagttgag cagggtgttc ttttccatgg
     3121 taattcttga gaagagtgtt cctgagaaca ttgactgggg aaatgtgaaa ggactataga
     3181 ggtcatgccc agaggattgc aacaggcatc ggcagatgta ataagagatg agagccttta
     3241 gaaggtgggt cggagtggag agtgccttga attctaccag tctagttcaa gtttgagtca
     3301 ctgggtagta gctgaggtga ggcttgagcc tgaaagtgct agttagcctg aatcagtacc
     3361 ttcaaaggag gctctggttg tagcatacac aagggttggg agaggacagt caagaaacaa
     3421 aaccctgtgg aaaggtttaa tcattatgat ttagaagtag gaatatagat taagagactc
     3481 ttgtatctga aaggaacact gtgggtcatt ggtcctgagg tcagcaagct acagcctggg
     3541 ag
//
LOCUS       XM_032603265            6007 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit B (LRRC8B), transcript variant X5, mRNA.
ACCESSION   XM_032603265
VERSION     XM_032603265.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6007
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6007
                     /gene="LRRC8B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 17 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739115"
     CDS             298..2709
                     /gene="LRRC8B"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8B
                     isoform X3"
                     /protein_id="XP_032459156.1"
                     /db_xref="GeneID:116739115"
                     /translation="MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGA
                     LQLTQSRVLCCLPCKVEFDNHCAVPWDILKASVNTSSDPGTLLPLPLRIQNDLHRQQY
                     SYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWLHYPSTSSRLEHFVAILHKCF
                     DSPWTTRALSETVAEQSVRPLTLSKSKVLLSSSGCSADVDSNKQSLPYPQPGLESAGI
                     ESPTSSVLDKKEGEQAKAIFEKVKRFRMHVEQKDIIYRVYLKQIIVKVILFVLIITYV
                     PYFLTYITLEIDCSVDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVILYGLTSSYSL
                     WWMLRSSLKQYSFEALREKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVS
                     ENKLKQINLNNEWTVEKLKSKLVKNSQDKIELHLFMLNGLPDNVFELTEIEVLSLELI
                     PEVKLPSAVSQLVNLKELHVYHSSLVVDHPALAFLEENLKILRLKFTEMGKIPRWVFH
                     LKNLKELYLSGCVLPEQVSTMQLEGFQDLKNLRTLYLKSSISRIPQVVTDLLPSLQKL
                     SLDNEGSKLVVLNNLKKMVNLKSLALISCDLERIPHSIFSLNNLHELNLKENNLKTVE
                     EIISFQHLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLH
                     YLDLSYNHLTFIPEEIQYLSNLQYFAVTNNNIEMLPDGLFQCKKLQCLLLGKNSLMSL
                     SPHVGELSNLTHLELIGNYLETLPPELEGCQSLKRSCLIVEENLLNTLPPPVTERLQT
                     CLDKC"
     misc_feature    298..1299
                     /gene="LRRC8B"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1690..1761
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1762..1830
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1828..>2667
                     /gene="LRRC8B"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1831..1914
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1915..1983
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1984..2124
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2125..2199
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2200..2268
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2269..2337
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2338..2406
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2407..2475
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2476..2544
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2545..2613
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2614..2685
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 cagatgagaa aactgatact tagtttacct aagatcaagc agatggtaaa tgacacagtc
       61 agaacttgat cttaaccatc ctgctatact cccttcctcc taagagtgtc aggaattttt
      121 caaatagaaa ctaattgcag agtttccggt tgaccaggca ttcataggaa tgaagacaat
      181 cacagagatg gtgtgtctaa gaaatttcaa aaggtgtagg cctcctgact gaagaacagt
      241 caacttattg gattcatttt ttttcattat atttctgtcc tcctacaagg gaaagtcatg
      301 attacactaa cagagctaaa atgtttagca gacgcccagt cgtcttatca catcctaaaa
      361 ccgtggtggg acgtcttttg gtattacatc accctgatca tgctgctggt ggccgtgctg
      421 gctggagccc tccagctcac acagagcagg gttctgtgct gtcttccgtg taaggtggaa
      481 ttcgacaatc actgcgccgt gccttgggac atcctgaaag ccagcgtgaa cacgtcttcc
      541 gatcccggga ctctgcttcc gctccccctc agaatccaga acgacctcca ccgacagcag
      601 tactcctaca tcgacgccgt ctgttatgag aagcagctcc actggttcgc aaagttcttt
      661 ccctacctgg tgctcttgca cacgctcatc tttgcagcct gcagcaactt ttggctgcac
      721 taccccagta ccagttccag gctcgagcat tttgtggcca tccttcacaa gtgcttcgat
      781 tctccatgga ccacccgtgc cctgtcagag acggtggctg agcagtcagt gaggcccctg
      841 acgctctcca agtccaaggt tttgctttct tcctcagggt gctcagctga tgttgattcc
      901 aacaagcagt cattgcccta cccgcagcct ggcttagagt cagctggcat agaaagccca
      961 acttctagcg tcctggacaa gaaggagggc gaacaggcca aagccatctt tgaaaaagtg
     1021 aaaaggttcc gcatgcacgt ggaacagaag gatatcattt atagagtgta tctgaagcag
     1081 ataatagtca aagtcatttt gtttgtcctc atcataactt acgttccgta ttttttaacc
     1141 tacattactc ttgaaattga ctgttcagtg gatgtgcagg cttttactgg atataagcgc
     1201 taccagtgtg tctactcctt ggcagaaata tttaaggtcc tggcttcatt ttatgtcatc
     1261 ttggttatac tttatggtct tacctcctcc tacagcttgt ggtggatgct gcggagttct
     1321 ctgaagcaat attcttttga ggcgctgaga gaaaaaagca actacagtga catcccggat
     1381 gtcaagaatg acttcgcctt cattctgcat ctggctgatc agtatgatcc tctttactcc
     1441 aaacgcttct ccatattcct gtcggaggtc agtgagaaca aactgaaaca gatcaacctc
     1501 aacaatgaat ggacggtcga gaaactgaaa agtaagcttg tgaaaaattc ccaggacaag
     1561 atagaactgc atcttttcat gctaaacggt cttccagaca atgtctttga gctgacagaa
     1621 attgaagtgc taagcctgga gctgatccct gaggtcaagc tgccttctgc ggtctcgcag
     1681 ctggtcaacc tcaaggagct tcacgtgtac cattcgtctc tggtggtcga ccatcctgcc
     1741 ctggcctttc tagaggagaa tttaaaaatc ctccgcctga aatttactga aatggggaaa
     1801 attccacgct gggtatttca tctgaagaat ctcaaggagc tttacctgtc aggctgtgtt
     1861 ctacctgagc aggtgagtac catgcagttg gagggctttc aggacttgaa aaacctgagg
     1921 accctctact tgaagagcag catctcccgg atcccacaag tcgttacaga cctcctgcct
     1981 tcgctgcaga agttgtccct cgataacgag gggagcaagc tggttgtatt gaacaacttg
     2041 aaaaagatgg tcaatctgaa aagcctggcg ctgatcagct gcgacctgga acgcattcca
     2101 cactccattt tcagtctgaa caatttgcat gagttaaacc ttaaagaaaa taaccttaaa
     2161 actgtggaag agatcattag ctttcagcat ctccagaatc tttcctgctt aaagttgtgg
     2221 cacaataaca tagcttatat tccggcccag attggggcat tatctaatct agagcaactc
     2281 tctttggacc ataataacat tgagaatctg cccctgcagc ttttcctatg caccaaacta
     2341 cattatttgg atctaagcta taaccacctg accttcattc cagaagaaat acagtatctg
     2401 agtaatttgc agtactttgc tgtgaccaac aacaacattg agatgctacc agatgggctg
     2461 tttcagtgca aaaagctgca gtgtttactt ttggggaaaa atagcctgat gagcttgtcc
     2521 cctcacgtgg gtgagctgtc gaaccttact catctggagc tcattggtaa ttacctggaa
     2581 acacttcctc ctgaactgga aggatgtcag tccctcaaac ggagctgtct gattgttgag
     2641 gagaatttgc tcaatactct tcctccccct gtaacagaac gtttgcagac atgcttagat
     2701 aaatgttgac ctaaagagga aaataaaaaa aaaaaaataa taaaaaaaaa aagaggaaaa
     2761 taatttttaa aagtacactc cagggcttta tctgagaact caattttcct aagttgtaaa
     2821 gatgaacaat ggataattat gactaactat aacccaatgt cttattaaag caactcagtg
     2881 tctatcccta aattaaacag gtaaaaagta ttaacactga actaaagttt tgtgaataat
     2941 tgatctttaa cttatggaaa tataagaagt acgcttggag ggtggaatgg ggacatgaaa
     3001 ttattgaatc tctacactgc agtttgtatc ttttgaagat taggtattac ttatttgcat
     3061 acttgtttta actgacttcc tgttttgata tttatcacct agaccataaa ctcatcaaca
     3121 taaattccct tgatgtgtac actgagcact gtctttgatt tatggtctta aatagtttta
     3181 ggcagggtac attgtgctag gcagaattcc ttctggctta atttttactt cctgtcccag
     3241 cttgttttga gtcttcctcc atctgatttt ctcttaacaa caatgatgaa ccctgagaaa
     3301 gtgcctgcct ttggcctttg catagaacag gagcagggta cttaggacat gtcaccctca
     3361 gggcatccta aaaattaatg tatactcaaa ttttttcttg tatatcatca aagccttttt
     3421 tatttgctaa tcatttttat attaaatgta aaacatacag atatttttat tgtataatct
     3481 tggattcaaa atctgtgaga ataatttttg taaggtacag agaacacatc cttttcttta
     3541 agaatttact attaatatac ttggttttgg ctgcgtatgg ttctcatatt tgtgcacatt
     3601 ctgttccaaa atgtttttgt actctgcaac taattacttt tggataacaa aagccttgtg
     3661 tttcatgccc taaaatattt ggggggtttc cttgtaagag gatggccaca tcatctacct
     3721 ctctcttccc tagtgctgtg ctattgtacg ggtacaattc ttaattactt caaaaactgt
     3781 gatggagggg agaggtgcag atttgaatct ttaaaacgga ttttaaagca ttctgtagaa
     3841 attaagtaag agttaagcaa aatactttct tctccatctg catgatctct agataggatt
     3901 ataatgtaaa acactcagct taaaattcag tgcttaaaat gagttctcaa agctcacaaa
     3961 gaaatagatc tggttaactg aaattcatct catgcctttg tctaactttt ctggaataca
     4021 ttttgctctt ttttataaag agctttgtgt ttggcttttt attatcatgc atattgtaaa
     4081 atgaataaaa tcgactgact cattttgggg aaacgtacat tttcaatgtg tttttctcta
     4141 atgggtctag gcattgtgat gctgtctcat tttggatgta actatgaagt aatctattaa
     4201 ctgcacctag acaaaactgg aaaacactat gggtaaagag tactgtaaac atggaattgt
     4261 gttgtatggt atgtttcctc ttgctttgtc ccttccagaa agatgaaagt ctaaattatg
     4321 gcaaaatgta gcttccctca cctgccacac acccctggac taacactcag agaaaagaat
     4381 tgttcacatc aaatgaaatt tgagtaatag ctataaaaaa tataaaacac caaaagctgc
     4441 ctaaaacatt attgtttatt ctgaatgaca aagaacagtg taaaaatgca attcttacca
     4501 aaacttgcct ttagtcagaa cattcaagtt ctcagggagc caggcataac tgatgaaact
     4561 ttcttgtagg atttcagaaa acagattctg actatatcta gggttttatg ttattttcaa
     4621 tcttttgaat gttgagttct ttgtcatttt aatgtttcac atctctgttg cacgatagaa
     4681 ttgtcacgtg taccgattcc agtgttggat aggattatct tatgtttgga acatgaatat
     4741 gatacatgga aatatgttta aatgttttgg gccatataat tagccataat gtgtatgaaa
     4801 aatcttaccc ccttctatca ggaagagttt ttaaaacaaa tttcagattt gctactattc
     4861 ccctgacaaa ctacaactcc tcccggctag tcatcagttc tgttcacctg cagaagtcac
     4921 tagccaaacc ttccttatca cccttctaaa tttctggaag caagttacta tcaggatcaa
     4981 taatgagttc tgtaagcttc ttcccaaaca ctagggtttg gttactaatg caaactctgt
     5041 tgttcttcat gccatagttt ttaggtttac ttctttattt caatcctaca ctccagtgtt
     5101 taggtaactt ttgaaatgat gtagcactga tgccatgaac tctgagacca ccacttaaca
     5161 cacaaaattg tgatgtttga tgccaccttt actgcaatgt tggagcagat cttcaatttg
     5221 gaagaggatt ttaaatgaac aaaattaagt ttattcaatt ataattttaa gactttagtt
     5281 gatacttgat ttccaagaac gtgtagtgca tttttcaaaa aataaacatg gatgttatta
     5341 gaacaaagtt gaaggcttat gctagcatcg gttcatttta tttacataca cacacagata
     5401 cacaatgatg agcttgcact cacacacaga cacacacacg ccacatgtat acaaaatgta
     5461 atctattagt tttggatatg tttaatattt ttctaaagtt gtaagaggtt gtaggttaat
     5521 gctaggatat taattctttt attccttact tgtaatcatg gagtattctg ttctcttagt
     5581 tgtaatgtta aaactaaatg ctcaaacttg gtcagcgacc taagtggttt tgagcatttc
     5641 ttgtaaggtg tagtgttcct tcactaacat acatcagggt atatctgtgt ggcacataga
     5701 tacggtgttt tcattcttca tcctcagtct tcattgttcc tctgatatca ccatgcttca
     5761 ctgtcactta gcaaatgttt gtgttaaaca gggtaaacag agatcctcaa ggtctcattg
     5821 ttgtggccta gctccaatgt gtgtgctgtg gtgagctgca gtgagttatc tgcgaaacat
     5881 tattgtttga tagtgaaaat atttgtttct gttcttcagg tgtctcatga ttcaaatttt
     5941 gtatgttgaa ttaaagtatt gcataatatt gatgggttca gaaaccatta aaataatcaa
     6001 acaatta
//
LOCUS       XM_032603273            5970 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit B (LRRC8B), transcript variant X6, mRNA.
ACCESSION   XM_032603273
VERSION     XM_032603273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5970
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5970
                     /gene="LRRC8B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 17 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739115"
     CDS             298..2709
                     /gene="LRRC8B"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8B
                     isoform X3"
                     /protein_id="XP_032459164.1"
                     /db_xref="GeneID:116739115"
                     /translation="MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGA
                     LQLTQSRVLCCLPCKVEFDNHCAVPWDILKASVNTSSDPGTLLPLPLRIQNDLHRQQY
                     SYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWLHYPSTSSRLEHFVAILHKCF
                     DSPWTTRALSETVAEQSVRPLTLSKSKVLLSSSGCSADVDSNKQSLPYPQPGLESAGI
                     ESPTSSVLDKKEGEQAKAIFEKVKRFRMHVEQKDIIYRVYLKQIIVKVILFVLIITYV
                     PYFLTYITLEIDCSVDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVILYGLTSSYSL
                     WWMLRSSLKQYSFEALREKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVS
                     ENKLKQINLNNEWTVEKLKSKLVKNSQDKIELHLFMLNGLPDNVFELTEIEVLSLELI
                     PEVKLPSAVSQLVNLKELHVYHSSLVVDHPALAFLEENLKILRLKFTEMGKIPRWVFH
                     LKNLKELYLSGCVLPEQVSTMQLEGFQDLKNLRTLYLKSSISRIPQVVTDLLPSLQKL
                     SLDNEGSKLVVLNNLKKMVNLKSLALISCDLERIPHSIFSLNNLHELNLKENNLKTVE
                     EIISFQHLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLH
                     YLDLSYNHLTFIPEEIQYLSNLQYFAVTNNNIEMLPDGLFQCKKLQCLLLGKNSLMSL
                     SPHVGELSNLTHLELIGNYLETLPPELEGCQSLKRSCLIVEENLLNTLPPPVTERLQT
                     CLDKC"
     misc_feature    298..1299
                     /gene="LRRC8B"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1690..1761
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1762..1830
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1828..>2667
                     /gene="LRRC8B"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1831..1914
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1915..1983
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1984..2124
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2125..2199
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2200..2268
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2269..2337
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2338..2406
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2407..2475
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2476..2544
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2545..2613
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2614..2685
                     /gene="LRRC8B"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 cagatgagaa aactgatact tagtttacct aagatcaagc agatggtaaa tgacacagtc
       61 agaacttgat cttaaccatc ctgctatact cccttcctcc taagagtgtc aggaattttt
      121 caaatagaaa ctaattgcag agtttccggt tgaccaggca ttcataggaa tgaagacaat
      181 cacagagatg gtgtgtctaa gaaatttcaa aaggtgtagg cctcctgact gaagaacagt
      241 caacttattg gattcatttt ttttcattat atttctgtcc tcctacaagg gaaagtcatg
      301 attacactaa cagagctaaa atgtttagca gacgcccagt cgtcttatca catcctaaaa
      361 ccgtggtggg acgtcttttg gtattacatc accctgatca tgctgctggt ggccgtgctg
      421 gctggagccc tccagctcac acagagcagg gttctgtgct gtcttccgtg taaggtggaa
      481 ttcgacaatc actgcgccgt gccttgggac atcctgaaag ccagcgtgaa cacgtcttcc
      541 gatcccggga ctctgcttcc gctccccctc agaatccaga acgacctcca ccgacagcag
      601 tactcctaca tcgacgccgt ctgttatgag aagcagctcc actggttcgc aaagttcttt
      661 ccctacctgg tgctcttgca cacgctcatc tttgcagcct gcagcaactt ttggctgcac
      721 taccccagta ccagttccag gctcgagcat tttgtggcca tccttcacaa gtgcttcgat
      781 tctccatgga ccacccgtgc cctgtcagag acggtggctg agcagtcagt gaggcccctg
      841 acgctctcca agtccaaggt tttgctttct tcctcagggt gctcagctga tgttgattcc
      901 aacaagcagt cattgcccta cccgcagcct ggcttagagt cagctggcat agaaagccca
      961 acttctagcg tcctggacaa gaaggagggc gaacaggcca aagccatctt tgaaaaagtg
     1021 aaaaggttcc gcatgcacgt ggaacagaag gatatcattt atagagtgta tctgaagcag
     1081 ataatagtca aagtcatttt gtttgtcctc atcataactt acgttccgta ttttttaacc
     1141 tacattactc ttgaaattga ctgttcagtg gatgtgcagg cttttactgg atataagcgc
     1201 taccagtgtg tctactcctt ggcagaaata tttaaggtcc tggcttcatt ttatgtcatc
     1261 ttggttatac tttatggtct tacctcctcc tacagcttgt ggtggatgct gcggagttct
     1321 ctgaagcaat attcttttga ggcgctgaga gaaaaaagca actacagtga catcccggat
     1381 gtcaagaatg acttcgcctt cattctgcat ctggctgatc agtatgatcc tctttactcc
     1441 aaacgcttct ccatattcct gtcggaggtc agtgagaaca aactgaaaca gatcaacctc
     1501 aacaatgaat ggacggtcga gaaactgaaa agtaagcttg tgaaaaattc ccaggacaag
     1561 atagaactgc atcttttcat gctaaacggt cttccagaca atgtctttga gctgacagaa
     1621 attgaagtgc taagcctgga gctgatccct gaggtcaagc tgccttctgc ggtctcgcag
     1681 ctggtcaacc tcaaggagct tcacgtgtac cattcgtctc tggtggtcga ccatcctgcc
     1741 ctggcctttc tagaggagaa tttaaaaatc ctccgcctga aatttactga aatggggaaa
     1801 attccacgct gggtatttca tctgaagaat ctcaaggagc tttacctgtc aggctgtgtt
     1861 ctacctgagc aggtgagtac catgcagttg gagggctttc aggacttgaa aaacctgagg
     1921 accctctact tgaagagcag catctcccgg atcccacaag tcgttacaga cctcctgcct
     1981 tcgctgcaga agttgtccct cgataacgag gggagcaagc tggttgtatt gaacaacttg
     2041 aaaaagatgg tcaatctgaa aagcctggcg ctgatcagct gcgacctgga acgcattcca
     2101 cactccattt tcagtctgaa caatttgcat gagttaaacc ttaaagaaaa taaccttaaa
     2161 actgtggaag agatcattag ctttcagcat ctccagaatc tttcctgctt aaagttgtgg
     2221 cacaataaca tagcttatat tccggcccag attggggcat tatctaatct agagcaactc
     2281 tctttggacc ataataacat tgagaatctg cccctgcagc ttttcctatg caccaaacta
     2341 cattatttgg atctaagcta taaccacctg accttcattc cagaagaaat acagtatctg
     2401 agtaatttgc agtactttgc tgtgaccaac aacaacattg agatgctacc agatgggctg
     2461 tttcagtgca aaaagctgca gtgtttactt ttggggaaaa atagcctgat gagcttgtcc
     2521 cctcacgtgg gtgagctgtc gaaccttact catctggagc tcattggtaa ttacctggaa
     2581 acacttcctc ctgaactgga aggatgtcag tccctcaaac ggagctgtct gattgttgag
     2641 gagaatttgc tcaatactct tcctccccct gtaacagaac gtttgcagac atgcttagat
     2701 aaatgttgac ctaaagagga aaataatttt taaaagtaca ctccagggct ttatctgaga
     2761 actcaatttt cctaagttgt aaagatgaac aatggataat tatgactaac tataacccaa
     2821 tgtcttatta aagcaactca gtgtctatcc ctaaattaaa caggtaaaaa gtattaacac
     2881 tgaactaaag ttttgtgaat aattgatctt taacttatgg aaatataaga agtacgcttg
     2941 gagggtggaa tggggacatg aaattattga atctctacac tgcagtttgt atcttttgaa
     3001 gattaggtat tacttatttg catacttgtt ttaactgact tcctgttttg atatttatca
     3061 cctagaccat aaactcatca acataaattc ccttgatgtg tacactgagc actgtctttg
     3121 atttatggtc ttaaatagtt ttaggcaggg tacattgtgc taggcagaat tccttctggc
     3181 ttaattttta cttcctgtcc cagcttgttt tgagtcttcc tccatctgat tttctcttaa
     3241 caacaatgat gaaccctgag aaagtgcctg cctttggcct ttgcatagaa caggagcagg
     3301 gtacttagga catgtcaccc tcagggcatc ctaaaaatta atgtatactc aaattttttc
     3361 ttgtatatca tcaaagcctt ttttatttgc taatcatttt tatattaaat gtaaaacata
     3421 cagatatttt tattgtataa tcttggattc aaaatctgtg agaataattt ttgtaaggta
     3481 cagagaacac atccttttct ttaagaattt actattaata tacttggttt tggctgcgta
     3541 tggttctcat atttgtgcac attctgttcc aaaatgtttt tgtactctgc aactaattac
     3601 ttttggataa caaaagcctt gtgtttcatg ccctaaaata tttggggggt ttccttgtaa
     3661 gaggatggcc acatcatcta cctctctctt ccctagtgct gtgctattgt acgggtacaa
     3721 ttcttaatta cttcaaaaac tgtgatggag gggagaggtg cagatttgaa tctttaaaac
     3781 ggattttaaa gcattctgta gaaattaagt aagagttaag caaaatactt tcttctccat
     3841 ctgcatgatc tctagatagg attataatgt aaaacactca gcttaaaatt cagtgcttaa
     3901 aatgagttct caaagctcac aaagaaatag atctggttaa ctgaaattca tctcatgcct
     3961 ttgtctaact tttctggaat acattttgct cttttttata aagagctttg tgtttggctt
     4021 tttattatca tgcatattgt aaaatgaata aaatcgactg actcattttg gggaaacgta
     4081 cattttcaat gtgtttttct ctaatgggtc taggcattgt gatgctgtct cattttggat
     4141 gtaactatga agtaatctat taactgcacc tagacaaaac tggaaaacac tatgggtaaa
     4201 gagtactgta aacatggaat tgtgttgtat ggtatgtttc ctcttgcttt gtcccttcca
     4261 gaaagatgaa agtctaaatt atggcaaaat gtagcttccc tcacctgcca cacacccctg
     4321 gactaacact cagagaaaag aattgttcac atcaaatgaa atttgagtaa tagctataaa
     4381 aaatataaaa caccaaaagc tgcctaaaac attattgttt attctgaatg acaaagaaca
     4441 gtgtaaaaat gcaattctta ccaaaacttg cctttagtca gaacattcaa gttctcaggg
     4501 agccaggcat aactgatgaa actttcttgt aggatttcag aaaacagatt ctgactatat
     4561 ctagggtttt atgttatttt caatcttttg aatgttgagt tctttgtcat tttaatgttt
     4621 cacatctctg ttgcacgata gaattgtcac gtgtaccgat tccagtgttg gataggatta
     4681 tcttatgttt ggaacatgaa tatgatacat ggaaatatgt ttaaatgttt tgggccatat
     4741 aattagccat aatgtgtatg aaaaatctta cccccttcta tcaggaagag tttttaaaac
     4801 aaatttcaga tttgctacta ttcccctgac aaactacaac tcctcccggc tagtcatcag
     4861 ttctgttcac ctgcagaagt cactagccaa accttcctta tcacccttct aaatttctgg
     4921 aagcaagtta ctatcaggat caataatgag ttctgtaagc ttcttcccaa acactagggt
     4981 ttggttacta atgcaaactc tgttgttctt catgccatag tttttaggtt tacttcttta
     5041 tttcaatcct acactccagt gtttaggtaa cttttgaaat gatgtagcac tgatgccatg
     5101 aactctgaga ccaccactta acacacaaaa ttgtgatgtt tgatgccacc tttactgcaa
     5161 tgttggagca gatcttcaat ttggaagagg attttaaatg aacaaaatta agtttattca
     5221 attataattt taagacttta gttgatactt gatttccaag aacgtgtagt gcatttttca
     5281 aaaaataaac atggatgtta ttagaacaaa gttgaaggct tatgctagca tcggttcatt
     5341 ttatttacat acacacacag atacacaatg atgagcttgc actcacacac agacacacac
     5401 acgccacatg tatacaaaat gtaatctatt agttttggat atgtttaata tttttctaaa
     5461 gttgtaagag gttgtaggtt aatgctagga tattaattct tttattcctt acttgtaatc
     5521 atggagtatt ctgttctctt agttgtaatg ttaaaactaa atgctcaaac ttggtcagcg
     5581 acctaagtgg ttttgagcat ttcttgtaag gtgtagtgtt ccttcactaa catacatcag
     5641 ggtatatctg tgtggcacat agatacggtg ttttcattct tcatcctcag tcttcattgt
     5701 tcctctgata tcaccatgct tcactgtcac ttagcaaatg tttgtgttaa acagggtaaa
     5761 cagagatcct caaggtctca ttgttgtggc ctagctccaa tgtgtgtgct gtggtgagct
     5821 gcagtgagtt atctgcgaaa cattattgtt tgatagtgaa aatatttgtt tctgttcttc
     5881 aggtgtctca tgattcaaat tttgtatgtt gaattaaagt attgcataat attgatgggt
     5941 tcagaaacca ttaaaataat caaacaatta
//
LOCUS       XM_032603286            2352 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus autophagy related 4C cysteine peptidase
            (ATG4C), partial mRNA.
ACCESSION   XM_032603286
VERSION     XM_032603286.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..2352
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            <1..2352
                     /gene="ATG4C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 4 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739142"
     CDS             <1..1257
                     /gene="ATG4C"
                     /codon_start=1
                     /product="cysteine protease ATG4C"
                     /protein_id="XP_032459177.1"
                     /db_xref="GeneID:116739142"
                     /translation="LLVGKYSLYFYFVDENELLPVSSGCTIEDHVIAGSVEEFRKDFI
                     SRIWLTYREEFPPIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALNIE
                     NSDSESWTSNTVKKFTASFEASLSAERELKTPTISLKGTIGRYSDDREMQNEIYHRKI
                     ISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGITI
                     YVAQDCTVYSSDVIDKQCTSMASDNTDDKAVIILVPVRLGGERTNADYLDFVKGILSL
                     EYCVGIVGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLETFHCPSPKKMS
                     FRKMDPSCTIGFYCRNVQDFKRASEEITKMLKISSKEKYPLFTFVNGHSRDYDFTSTT
                     TNEEDLFSEDEKKRLKRFSTEEFVLL"
     misc_feature    106..1062
                     /gene="ATG4C"
                     /note="Peptidase family C54; Region: Peptidase_C54;
                     pfam03416"
                     /db_xref="CDD:460915"
     misc_feature    1159..1254
                     /gene="ATG4C"
                     /note="ATG4, F-type LIR motif; Region: ATG4_LIR;
                     pfam20166"
                     /db_xref="CDD:466317"
ORIGIN      
        1 ttattggttg gaaagtatag tttatatttt tattttgtag atgaaaatga actgttacct
       61 gtaagctcag gatgtacaat agaagatcat gtgattgcgg gaagtgtaga agaatttcgt
      121 aaagacttca tttcaagaat atggcttacc tacagggaag agtttcctcc aatagaaggc
      181 tcagctttga caacggactg tggttggggc tgtacactaa gaactggcca gatgctgttg
      241 gctcaaggac tcatactaca cttccttggt agagcttgga cctggcctga tgctttgaac
      301 attgaaaatt cagactctga atcatggact tccaacactg taaaaaaatt tactgcatcc
      361 ttcgaagcat cgctttcagc ggaaagagaa ctcaaaaccc caacaatttc tctgaaggga
      421 acaatcggga gatattctga tgatcgtgaa atgcaaaatg aaatttatca caggaaaatc
      481 atctcttggt ttggtgattc ccccttggct ctctttggtt tacatcaact aatagaatat
      541 ggaaagaagt ctgggaaaaa agctggagat tggtatggac cagctgtggt tgctcacatt
      601 ttaagaaaag cagttgaaga agcaagacac ccagatttac aaggaataac tatttatgtt
      661 gcgcaagatt gtacagttta cagttctgat gtaattgata aacagtgcac ttccatggcc
      721 tctgataata cagatgacaa agctgttatt attctagttc ctgttagact tggtggagaa
      781 agaaccaatg ccgactattt agattttgta aagggtattt taagccttga atattgtgtg
      841 ggtattgttg gtggcaaacc taaacagtca tattactttg ctggatttca agatgacagt
      901 ttgatttaca tggatcctca ttactgccaa tcttttgtag atgtcagcat aaaggatttc
      961 cctcttgaga cattccactg cccttctccc aaaaagatgt catttcgaaa aatggatcct
     1021 agctgtacaa taggatttta ctgtcgaaat gttcaggact tcaaacgagc ttctgaagaa
     1081 atcactaaga tgctgaaaat ttcttctaag gagaaatatc ccttatttac ttttgtaaat
     1141 ggtcattcca gagactatga ttttacatct actacaacca atgaagaaga ccttttctca
     1201 gaggacgaaa agaaaagatt aaaaagattt agcacagaag agtttgtctt gctgtaaaga
     1261 ttagcacatt tgtgcttgat gagaagaaat cctttgaagg aagcaaaatg aagagaaaca
     1321 agtatacttg aaactggttt attttcacaa ataccttaat tttatacgtt ctttaaaaaa
     1381 agaacatttg aaaatataca agttttaaag atattttttt gaaagagaaa tgattcagtg
     1441 aatcttgatt tctaataaat atcaagtgat tctggctgca ttcctgtttc cctaagatct
     1501 gctaatgata actctacctt aactgcaagt cttccagtct tcaaattctt ccacctgggt
     1561 ccagtattct cctgaaggtt ttgtgatatt gggccccaaa ataggatcac caaatagttt
     1621 caaaagcttc agattatact aatgaccaga agagcagaga atgaatcttc agtgctgcct
     1681 aagcctcctg atattaatgc aaccaaagga tgcttttgga tgtatcttga tatattaaat
     1741 agtaattttt agctgtgata tgatacaatt acataagcag aattttgagt taaggtaata
     1801 cgtagcagta tgattttaca atggcacctc attttacttg ctgttgagcc ttgtctgagc
     1861 agtgaaggta aagtattggt tttccctaca gatttaaagt ttatgttatt aataataact
     1921 acatccaatc taacagataa aggcaaaatt gtttgtttcc tatctcaaaa atgaaatttt
     1981 atggaaactc tacttattat gcagttttaa aatctaaaga taagtaccag gaaaggtatc
     2041 agtagatgct ccccatgtga tttttgctat ttgtataaat cagtgcagtg gtgtttagaa
     2101 gctgaggcca tctatacggt aaatctgcct taactgtgtt atgtattgct caaaggcaaa
     2161 tatgtgatat aaaagtatga gttattattg agccaggttt ataaaataag tactttaata
     2221 aagatgtaag aacataaaat gcctttgttt tggttttaat gggattattt taatcctttc
     2281 atttgaaaaa tcattgtctc aaatgaattc tgtttattta taatgaaggc aaataatatt
     2341 gttgctttga aa
//
LOCUS       XM_032603298            3203 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sushi domain containing 4 (SUSD4),
            transcript variant X1, mRNA.
ACCESSION   XM_032603298
VERSION     XM_032603298.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3203
                     /gene="SUSD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739150"
     CDS             157..1617
                     /gene="SUSD4"
                     /codon_start=1
                     /product="sushi domain-containing protein 4 isoform X1"
                     /protein_id="XP_032459189.1"
                     /db_xref="GeneID:116739150"
                     /translation="MYHGMNPSNGDGFLEQQQPQSPQRLLAVILWFQLALCFGPAQLT
                     GGFDDLQVCADPGVPENGFRTPSGGVFFESSVTRFHCQDGFKLKGSTKRLCMKHLNGT
                     LGWIPSDKPVCVQEDCRIPQIEDAEIHNKTYIHGDKLIITCHEGFKIRYPDRYNMASL
                     CRDDGTWDHLPICQGCLRPLASSNGYVNISEFQTSFPVGTVISYHCFPGFKLEGSEYL
                     ECLHNLIWSSSPPRCLALEVCPLPPMVSHGDFVCHPRPCERYSHGTVVEFYCDPGYSL
                     TSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETLLTTWKIVAFTATSVLLLLLLVI
                     LARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGLSALGPGYLS
                     SVGQGCPLPVDDQSPPAYPGSGDTDTGPGESGTRDSVSGSSELLQSLYSPPTCQGGTR
                     PASDNPDTAPSTAGEVASTSPGIDIADEIPLMEEDP"
     misc_feature    232..>858
                     /gene="SUSD4"
                     /note="EEV host range protein; Provisional; Region:
                     PHA02639"
                     /db_xref="CDD:165022"
     misc_feature    871..1035
                     /gene="SUSD4"
                     /note="Domain abundant in complement control proteins;
                     SUSHI repeat; short complement-like repeat (SCR); Region:
                     CCP; smart00032"
                     /db_xref="CDD:214478"
     misc_feature    order(901..903,967..969)
                     /gene="SUSD4"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
ORIGIN      
        1 cgcggcttcc gtctcgctcg ctcgcgcagc ggcggcagca gaggtcgcgc acagatgcgg
       61 gttagactgg cggggggagg aggcggagga ggaaaggaag ctgcatgcat gagacccaca
      121 gactcttgca agccggatgc cctctgtgga tgaaagatgt atcatggaat gaacccgagc
      181 aatggagatg gatttctaga gcagcagcag cctcagtccc cccagagact cttggccgtg
      241 atcctgtggt ttcagctggc gctgtgcttc ggccctgcac agctcacggg cgggttcgat
      301 gaccttcagg tgtgtgctga cccaggcgtc cctgagaatg gcttcaggac gcccagtgga
      361 ggggttttct ttgaaagctc cgtcacccga tttcactgcc aagatggatt caagctgaag
      421 ggctctacaa agagactgtg tatgaaacat ctgaacggaa ccctaggctg gatcccaagt
      481 gataaacccg tctgtgtgca ggaagattgc cgcatcccgc aaattgaaga tgccgagatt
      541 cataacaaga catacataca tggagataaa ttaatcatca cttgtcacga aggattcaag
      601 atccggtacc ctgaccggta caacatggct tcattatgtc gtgatgacgg aacatgggac
      661 catctgccca tctgtcaagg ctgcctgaga ccgctggcct cttctaatgg ctatgtgaac
      721 atctccgagt tccagacctc cttcccagtg ggaactgtga tctcctatca ctgctttcct
      781 ggattcaaac tcgagggatc ggagtatctc gagtgcttac acaaccttat ctggtcgtcc
      841 agcccacccc ggtgccttgc tctggaagtc tgcccgctgc ctcccatggt gagtcacgga
      901 gatttcgtct gccacccgcg gccatgtgag cgctacagcc acgggaccgt ggtggagttt
      961 tactgcgatc ccggctacag cctcaccagt gactacaaat acatcacctg ccagtacggg
     1021 gagtggtttc cttcctatca agtctactgc atcaagtcag agcaaacgtg gcccagcacc
     1081 cacgagaccc tcctgaccac gtggaagatc gtggcgttca cggcgaccag cgtgctgcta
     1141 ctgctgttgc ttgtcatcct ggccaggatg ttccagacca agttcaaggc ccactttccc
     1201 cccagggggc ctcccaggag ttccagcagc gaccccgact tcgtggtggt agacggcgtg
     1261 cccgtcatgc tcccgtccta tgacgaggct gtgagtggcg gcttgagtgc cttaggccca
     1321 gggtacctgt cctccgtggg ccagggctgc cccttacccg tggacgacca gagcccccca
     1381 gcataccccg gctcagggga cacggacacg ggcccggggg agtcaggaac ccgtgacagc
     1441 gtctcaggct cttcggagct gctccagagt ttgtattcac ctcccacgtg ccaagggggc
     1501 acccgccccg cttccgacaa ccctgacaca gctcccagca cggcggggga ggtggcatcc
     1561 accagcccag gcattgacat tgcagatgag atccctctaa tggaagaaga tccataactg
     1621 gaaaaagtca cgatgattct gctgcccctt tggggatggg caccttgtac tttggagtga
     1681 ggcctctgga ggacagagct tgggggggga tggaggaagt tttctaattt atcaacgtgg
     1741 ggacagtgac acatcggaca tctcagactc aacagttgag gctgacacaa agggcagtgg
     1801 cagcgctttt aaatgcaact tgaggatttg ccaagaccag tgaggaaccg aaaggatggg
     1861 gggagaccct gtgtggtcct ggatgaaggt gtgaagtgca tcttgtgctg tggaacatgg
     1921 gacggacgat tccatgcgta tcccaccaaa tcccacatcc cgctgactta tgagtactcc
     1981 ccgcctcctc tgaaagcacg ccacgttatg taaaccgctt ctaagatctg cttcaaactg
     2041 cctctggacg ccaagttagg gtggatcagc ctctgcagga agtctgtgtt gagctgctgg
     2101 aagagcagca gagcgccccc tgcaggctcc ccaaggaaga ttctggggtg ccctttggac
     2161 agtcttcctc gggctggaca gctctgctca aggcaagact aaagccggat gtggcggttc
     2221 cactgagaaa ggaaaagaaa gactcagacg gactcggctt tctggaaatt tcttcaaaaa
     2281 gtagggctcc tgtcctccgt gctgtccttt ggtgaaatat catcagtatt tgtattcatg
     2341 gtctagcaca cggatccgtg gcattggcta aatcttgtga ctttacacat ggtcagagtg
     2401 tgttcaaata gcatcacatg gtggagacgt aaccaaggaa atgttttgtt tcggcttttt
     2461 tttttttttt tttttgcggt acgcgggcct ctcccgtggc ggagcacagg ctccggacgc
     2521 acaggctcag cggccatggc tcacaggccc agccgctccg cggcatgtgg gatcttcccg
     2581 gaccggggca cgaacccgtg tcccctgcat cggcgggcgg actctcaacc actgcgccac
     2641 cagggaagcc ctgtttcggc atttttaaaa gatcccacct gacgatttat ctgagtcgtg
     2701 agcccatctc cagttaacta ttagggttgt tgcccccgct gccaaactca gatttaattt
     2761 tccaaaacag aaattgtatc tgaaaacata ttcctccccc tccaaataaa atgtgaggtt
     2821 ggattttttt ccccaccttt tattttgtcc tgcgaagtcc gcagcctccg aagacagaca
     2881 acccttcgct cctgcttccc aggcctccgg ttgtctcacc cacctgtcca tccatcactc
     2941 gcacagcacc ctcccggggc ccactgggtg tcgttcctaa gaaaatgatt gataaaaaca
     3001 tttcccaagt cttgaagtgt ctcttcgaat acatgttgat ctgtggagct gattccatct
     3061 ctcctctggg ttttaaacga atacaatcaa aactctaatc cataaaattg ctatgctgat
     3121 agagcggtga gagctggaag cttgatcaat tcctgttttt tctcgacaca gactgattaa
     3181 aaattaaaaa gaaaatgaca gtt
//
LOCUS       XM_032603307            2990 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sushi domain containing 4 (SUSD4),
            transcript variant X2, mRNA.
ACCESSION   XM_032603307
VERSION     XM_032603307.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2990
                     /gene="SUSD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116739150"
     CDS             157..1404
                     /gene="SUSD4"
                     /codon_start=1
                     /product="sushi domain-containing protein 4 isoform X2"
                     /protein_id="XP_032459198.1"
                     /db_xref="GeneID:116739150"
                     /translation="MYHGMNPSNGDGFLEQQQPQSPQRLLAVILWFQLALCFGPAQLT
                     GDCRIPQIEDAEIHNKTYIHGDKLIITCHEGFKIRYPDRYNMASLCRDDGTWDHLPIC
                     QGCLRPLASSNGYVNISEFQTSFPVGTVISYHCFPGFKLEGSEYLECLHNLIWSSSPP
                     RCLALEVCPLPPMVSHGDFVCHPRPCERYSHGTVVEFYCDPGYSLTSDYKYITCQYGE
                     WFPSYQVYCIKSEQTWPSTHETLLTTWKIVAFTATSVLLLLLLVILARMFQTKFKAHF
                     PPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGLSALGPGYLSSVGQGCPLPVDDQ
                     SPPAYPGSGDTDTGPGESGTRDSVSGSSELLQSLYSPPTCQGGTRPASDNPDTAPSTA
                     GEVASTSPGIDIADEIPLMEEDP"
     misc_feature    331..>813
                     /gene="SUSD4"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    469..642
                     /gene="SUSD4"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(499..501,562..564)
                     /gene="SUSD4"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
ORIGIN      
        1 cgcggcttcc gtctcgctcg ctcgcgcagc ggcggcagca gaggtcgcgc acagatgcgg
       61 gttagactgg cggggggagg aggcggagga ggaaaggaag ctgcatgcat gagacccaca
      121 gactcttgca agccggatgc cctctgtgga tgaaagatgt atcatggaat gaacccgagc
      181 aatggagatg gatttctaga gcagcagcag cctcagtccc cccagagact cttggccgtg
      241 atcctgtggt ttcagctggc gctgtgcttc ggccctgcac agctcacggg cgattgccgc
      301 atcccgcaaa ttgaagatgc cgagattcat aacaagacat acatacatgg agataaatta
      361 atcatcactt gtcacgaagg attcaagatc cggtaccctg accggtacaa catggcttca
      421 ttatgtcgtg atgacggaac atgggaccat ctgcccatct gtcaaggctg cctgagaccg
      481 ctggcctctt ctaatggcta tgtgaacatc tccgagttcc agacctcctt cccagtggga
      541 actgtgatct cctatcactg ctttcctgga ttcaaactcg agggatcgga gtatctcgag
      601 tgcttacaca accttatctg gtcgtccagc ccaccccggt gccttgctct ggaagtctgc
      661 ccgctgcctc ccatggtgag tcacggagat ttcgtctgcc acccgcggcc atgtgagcgc
      721 tacagccacg ggaccgtggt ggagttttac tgcgatcccg gctacagcct caccagtgac
      781 tacaaataca tcacctgcca gtacggggag tggtttcctt cctatcaagt ctactgcatc
      841 aagtcagagc aaacgtggcc cagcacccac gagaccctcc tgaccacgtg gaagatcgtg
      901 gcgttcacgg cgaccagcgt gctgctactg ctgttgcttg tcatcctggc caggatgttc
      961 cagaccaagt tcaaggccca ctttcccccc agggggcctc ccaggagttc cagcagcgac
     1021 cccgacttcg tggtggtaga cggcgtgccc gtcatgctcc cgtcctatga cgaggctgtg
     1081 agtggcggct tgagtgcctt aggcccaggg tacctgtcct ccgtgggcca gggctgcccc
     1141 ttacccgtgg acgaccagag ccccccagca taccccggct caggggacac ggacacgggc
     1201 ccgggggagt caggaacccg tgacagcgtc tcaggctctt cggagctgct ccagagtttg
     1261 tattcacctc ccacgtgcca agggggcacc cgccccgctt ccgacaaccc tgacacagct
     1321 cccagcacgg cgggggaggt ggcatccacc agcccaggca ttgacattgc agatgagatc
     1381 cctctaatgg aagaagatcc ataactggaa aaagtcacga tgattctgct gcccctttgg
     1441 ggatgggcac cttgtacttt ggagtgaggc ctctggagga cagagcttgg ggggggatgg
     1501 aggaagtttt ctaatttatc aacgtgggga cagtgacaca tcggacatct cagactcaac
     1561 agttgaggct gacacaaagg gcagtggcag cgcttttaaa tgcaacttga ggatttgcca
     1621 agaccagtga ggaaccgaaa ggatgggggg agaccctgtg tggtcctgga tgaaggtgtg
     1681 aagtgcatct tgtgctgtgg aacatgggac ggacgattcc atgcgtatcc caccaaatcc
     1741 cacatcccgc tgacttatga gtactccccg cctcctctga aagcacgcca cgttatgtaa
     1801 accgcttcta agatctgctt caaactgcct ctggacgcca agttagggtg gatcagcctc
     1861 tgcaggaagt ctgtgttgag ctgctggaag agcagcagag cgccccctgc aggctcccca
     1921 aggaagattc tggggtgccc tttggacagt cttcctcggg ctggacagct ctgctcaagg
     1981 caagactaaa gccggatgtg gcggttccac tgagaaagga aaagaaagac tcagacggac
     2041 tcggctttct ggaaatttct tcaaaaagta gggctcctgt cctccgtgct gtcctttggt
     2101 gaaatatcat cagtatttgt attcatggtc tagcacacgg atccgtggca ttggctaaat
     2161 cttgtgactt tacacatggt cagagtgtgt tcaaatagca tcacatggtg gagacgtaac
     2221 caaggaaatg ttttgtttcg gctttttttt tttttttttt ttgcggtacg cgggcctctc
     2281 ccgtggcgga gcacaggctc cggacgcaca ggctcagcgg ccatggctca caggcccagc
     2341 cgctccgcgg catgtgggat cttcccggac cggggcacga acccgtgtcc cctgcatcgg
     2401 cgggcggact ctcaaccact gcgccaccag ggaagccctg tttcggcatt tttaaaagat
     2461 cccacctgac gatttatctg agtcgtgagc ccatctccag ttaactatta gggttgttgc
     2521 ccccgctgcc aaactcagat ttaattttcc aaaacagaaa ttgtatctga aaacatattc
     2581 ctccccctcc aaataaaatg tgaggttgga tttttttccc caccttttat tttgtcctgc
     2641 gaagtccgca gcctccgaag acagacaacc cttcgctcct gcttcccagg cctccggttg
     2701 tctcacccac ctgtccatcc atcactcgca cagcaccctc ccggggccca ctgggtgtcg
     2761 ttcctaagaa aatgattgat aaaaacattt cccaagtctt gaagtgtctc ttcgaataca
     2821 tgttgatctg tggagctgat tccatctctc ctctgggttt taaacgaata caatcaaaac
     2881 tctaatccat aaaattgcta tgctgataga gcggtgagag ctggaagctt gatcaattcc
     2941 tgttttttct cgacacagac tgattaaaaa ttaaaaagaa aatgacagtt
//
LOCUS       XM_032603317            2820 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sushi domain containing 4 (SUSD4),
            transcript variant X3, mRNA.
ACCESSION   XM_032603317
VERSION     XM_032603317.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2820
                     /gene="SUSD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116739150"
     CDS             157..1344
                     /gene="SUSD4"
                     /codon_start=1
                     /product="sushi domain-containing protein 4 isoform X3"
                     /protein_id="XP_032459208.1"
                     /db_xref="GeneID:116739150"
                     /translation="MYHGMNPSNGDGFLEQQQPQSPQRLLAVILWFQLALCFGPAQLT
                     GGFDDLQVCADPGVPENGFRTPSGGVFFESSVTRFHCQDGFKLKGSTKRLCMKHLNGT
                     LGWIPSDKPVCVQEDCRIPQIEDAEIHNKTYIHGDKLIITCHEGFKIRYPDRYNMASL
                     CRDDGTWDHLPICQGCLRPLASSNGYVNISEFQTSFPVGTVISYHCFPGFKLEGSEYL
                     ECLHNLIWSSSPPRCLALEVCPLPPMVSHGDFVCHPRPCERYSHGTVVEFYCDPGYSL
                     TSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETLLTTWKIVAFTATSVLLLLLLVI
                     LARMFQTKFKAHFPPRDPSNGRRSITGKSHDDSAAPLGMGTLYFGVRPLEDRAWGGME
                     EVF"
     misc_feature    <313..858
                     /gene="SUSD4"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    871..1035
                     /gene="SUSD4"
                     /note="Domain abundant in complement control proteins;
                     SUSHI repeat; short complement-like repeat (SCR); Region:
                     CCP; smart00032"
                     /db_xref="CDD:214478"
     misc_feature    order(901..903,967..969)
                     /gene="SUSD4"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
ORIGIN      
        1 cgcggcttcc gtctcgctcg ctcgcgcagc ggcggcagca gaggtcgcgc acagatgcgg
       61 gttagactgg cggggggagg aggcggagga ggaaaggaag ctgcatgcat gagacccaca
      121 gactcttgca agccggatgc cctctgtgga tgaaagatgt atcatggaat gaacccgagc
      181 aatggagatg gatttctaga gcagcagcag cctcagtccc cccagagact cttggccgtg
      241 atcctgtggt ttcagctggc gctgtgcttc ggccctgcac agctcacggg cgggttcgat
      301 gaccttcagg tgtgtgctga cccaggcgtc cctgagaatg gcttcaggac gcccagtgga
      361 ggggttttct ttgaaagctc cgtcacccga tttcactgcc aagatggatt caagctgaag
      421 ggctctacaa agagactgtg tatgaaacat ctgaacggaa ccctaggctg gatcccaagt
      481 gataaacccg tctgtgtgca ggaagattgc cgcatcccgc aaattgaaga tgccgagatt
      541 cataacaaga catacataca tggagataaa ttaatcatca cttgtcacga aggattcaag
      601 atccggtacc ctgaccggta caacatggct tcattatgtc gtgatgacgg aacatgggac
      661 catctgccca tctgtcaagg ctgcctgaga ccgctggcct cttctaatgg ctatgtgaac
      721 atctccgagt tccagacctc cttcccagtg ggaactgtga tctcctatca ctgctttcct
      781 ggattcaaac tcgagggatc ggagtatctc gagtgcttac acaaccttat ctggtcgtcc
      841 agcccacccc ggtgccttgc tctggaagtc tgcccgctgc ctcccatggt gagtcacgga
      901 gatttcgtct gccacccgcg gccatgtgag cgctacagcc acgggaccgt ggtggagttt
      961 tactgcgatc ccggctacag cctcaccagt gactacaaat acatcacctg ccagtacggg
     1021 gagtggtttc cttcctatca agtctactgc atcaagtcag agcaaacgtg gcccagcacc
     1081 cacgagaccc tcctgaccac gtggaagatc gtggcgttca cggcgaccag cgtgctgcta
     1141 ctgctgttgc ttgtcatcct ggccaggatg ttccagacca agttcaaggc ccactttccc
     1201 cccagagatc cctctaatgg aagaagatcc ataactggaa aaagtcacga tgattctgct
     1261 gcccctttgg ggatgggcac cttgtacttt ggagtgaggc ctctggagga cagagcttgg
     1321 ggggggatgg aggaagtttt ctaatttatc aacgtgggga cagtgacaca tcggacatct
     1381 cagactcaac agttgaggct gacacaaagg gcagtggcag cgcttttaaa tgcaacttga
     1441 ggatttgcca agaccagtga ggaaccgaaa ggatgggggg agaccctgtg tggtcctgga
     1501 tgaaggtgtg aagtgcatct tgtgctgtgg aacatgggac ggacgattcc atgcgtatcc
     1561 caccaaatcc cacatcccgc tgacttatga gtactccccg cctcctctga aagcacgcca
     1621 cgttatgtaa accgcttcta agatctgctt caaactgcct ctggacgcca agttagggtg
     1681 gatcagcctc tgcaggaagt ctgtgttgag ctgctggaag agcagcagag cgccccctgc
     1741 aggctcccca aggaagattc tggggtgccc tttggacagt cttcctcggg ctggacagct
     1801 ctgctcaagg caagactaaa gccggatgtg gcggttccac tgagaaagga aaagaaagac
     1861 tcagacggac tcggctttct ggaaatttct tcaaaaagta gggctcctgt cctccgtgct
     1921 gtcctttggt gaaatatcat cagtatttgt attcatggtc tagcacacgg atccgtggca
     1981 ttggctaaat cttgtgactt tacacatggt cagagtgtgt tcaaatagca tcacatggtg
     2041 gagacgtaac caaggaaatg ttttgtttcg gctttttttt tttttttttt ttgcggtacg
     2101 cgggcctctc ccgtggcgga gcacaggctc cggacgcaca ggctcagcgg ccatggctca
     2161 caggcccagc cgctccgcgg catgtgggat cttcccggac cggggcacga acccgtgtcc
     2221 cctgcatcgg cgggcggact ctcaaccact gcgccaccag ggaagccctg tttcggcatt
     2281 tttaaaagat cccacctgac gatttatctg agtcgtgagc ccatctccag ttaactatta
     2341 gggttgttgc ccccgctgcc aaactcagat ttaattttcc aaaacagaaa ttgtatctga
     2401 aaacatattc ctccccctcc aaataaaatg tgaggttgga tttttttccc caccttttat
     2461 tttgtcctgc gaagtccgca gcctccgaag acagacaacc cttcgctcct gcttcccagg
     2521 cctccggttg tctcacccac ctgtccatcc atcactcgca cagcaccctc ccggggccca
     2581 ctgggtgtcg ttcctaagaa aatgattgat aaaaacattt cccaagtctt gaagtgtctc
     2641 ttcgaataca tgttgatctg tggagctgat tccatctctc ctctgggttt taaacgaata
     2701 caatcaaaac tctaatccat aaaattgcta tgctgataga gcggtgagag ctggaagctt
     2761 gatcaattcc tgttttttct cgacacagac tgattaaaaa ttaaaaagaa aatgacagtt
//
LOCUS       XM_032603328            3109 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus niban apoptosis regulator 1 (NIBAN1),
            transcript variant X1, mRNA.
ACCESSION   XM_032603328
VERSION     XM_032603328.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3109
                     /gene="NIBAN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 51 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739161"
     CDS             210..3011
                     /gene="NIBAN1"
                     /codon_start=1
                     /product="protein Niban 1 isoform X1"
                     /protein_id="XP_032459219.1"
                     /db_xref="GeneID:116739161"
                     /translation="MGGSASSQLDEGKCAYIRGKTEAAIKNFSPYYSRQYSVAFCNYV
                     RSEVEQQRDLTSQFLKTKPPLEPGTVLYEAELSQFAEDIKKWKERYVVVKNDFAVESY
                     ENKEAYQRGAPPKSRILPAGGKVLTSEDEYGLLSDRHFPDPIASSEKENMQPFVVLPK
                     EFPVYLWQPFLRHGYFCFQDAAEQRKFSALLSDCIRHLNHDYMKQTTFEVQAFLEAVQ
                     FFRQEKGHYGSWEMITGDEVQILSNLVMEELMPTLQTDILPKMKGKKNDRKRAWFGLL
                     EEAYNLVQHQVSEGLSALKEECRALTKGLEGTIRSDMDQIVNSKNFLIGKIKAMVAQP
                     AERSCAESVQPFLASILEELMGPVSSGFSEVRSLFEKEVDELSQNFQTTKDSAQLKEH
                     LDWFMNLPLDSVKMEPCYSKVNLLQEHLQDLKSRFRFPHIDLVVQRTQNYMQELMENA
                     VFTFEQLLSPHLQGEASKTTAAIEKVKLRVLKQYDYDSSTIRKRIFQEALVQITLPTV
                     QKALASVCKPELQKYEQFIFADHTNMIHVENVYEEILHQILLDETLKVIKEAAILKKH
                     NLFEDNMALPSESVSSLTDLKTPAGSNQASPARRASAILPEVPDSEILSNEVFQESGE
                     KKQPGVPSPLAKGESLCFPVPSPPPDGDGQVIISSTDDPVVNPVAAEDTAEALGKHSS
                     ELEFGETHEGQEPTQEKPEPTSALGSLKELRNLLTVTTEVPGESATPEIEKDTSKETL
                     VPQEIEKEEEMTQIYTETNQAAASSQVSSEESEVNEREVHPPSPEAEADGVELGASPE
                     AQPACGGLSEGTRGPGPLEEPAEAGEPTERELTAGSSGLDALEGGGPRCAVEAEAMPQ
                     EGCKLSCDPVSPSESQVSLEEEAVGGNHSTAQATASVEAKKSKATRVHECQWVVESDA
                     DTYSLDSQREDPPERPSEE"
     misc_feature    234..1892
                     /gene="NIBAN1"
                     /note="Niban-like protein; Region: Niban-like; cd23949"
                     /db_xref="CDD:469558"
     misc_feature    <1935..2816
                     /gene="NIBAN1"
                     /note="Family of unknown function (DUF5585); Region:
                     DUF5585; pfam17823"
                     /db_xref="CDD:465521"
ORIGIN      
        1 ccacagatct tcagagggcg cggacccgta ggaggcgccc gagaaggccg cgcctcttgg
       61 aggaagtttg ccctttaatt gcagagctca gatctccgtc tcatcaactt ccaggagcgg
      121 gcggcgggcg ccgacgggag tgtcagtccc tcccgcccag ggactgggtc gggcagccgc
      181 ggcgttcagc gttctcccgc accgtcgcca tgggcggctc ggcctccagt cagttggacg
      241 agggcaagtg cgcctacatc cgagggaaaa ctgaggctgc tatcaaaaac ttcagtccct
      301 attacagtcg ccagtactct gtggctttct gcaattatgt acgcagtgaa gtagaacagc
      361 aaagagattt aacatcacaa tttttgaaga ccaagccacc attggagcct ggaactgttt
      421 tgtatgaagc agagctatca cagtttgctg aggacataaa gaaatggaag gagagatatg
      481 ttgtggttaa aaatgacttt gctgtggaaa gctatgagaa caaagaggcc tatcagagag
      541 gagctccccc taaaagccga attcttccag ctggtggcaa ggtgttaacc tcagaagatg
      601 aatacggttt attatctgat cggcatttcc cagaccccat tgcatccagt gagaaggaga
      661 acatgcagcc ctttgtggtc ctgcccaagg aattcccggt gtacctgtgg cagccattcc
      721 tcagacatgg ctacttctgc tttcaggatg ccgctgagca gaggaagttc agtgctctcc
      781 tgagtgactg catcagacat ctaaatcatg attacatgaa gcagacgaca tttgaagtcc
      841 aagccttttt agaagctgtg caattcttcc gacaggagaa gggacactat ggctcgtggg
      901 aaatgatcac tggggatgaa gtccagatcc tgagtaacct ggtaatggag gagctcatgc
      961 caacccttca gacagacatc ctgcctaaaa tgaaggggaa gaagaacgac agaaagaggg
     1021 cctggttcgg tctcctcgaa gaggcctaca acctggttca gcatcaagtt tcagaaggat
     1081 taagtgcatt gaaggaggaa tgcagggctc tgacaaaagg cctggaaggc accatccgtt
     1141 cagacatgga tcagattgtg aactcaaaga actttttaat tggaaagatc aaagcgatgg
     1201 tggctcagcc agcagagaga agttgtgcag agagtgtgca accattcctg gcatccattc
     1261 tggaggagct catgggaccg gtgagctcag gattcagtga agtacgctca ctctttgaaa
     1321 aagaagtgga tgaacttagc cagaactttc agaccaccaa agacagtgcc cagctaaagg
     1381 agcatctaga ctggtttatg aatcttccat tggattccgt gaagatggaa ccttgttata
     1441 gtaaagtcaa cctgcttcag gagcacctgc aggatctcaa gagccgcttc agattccccc
     1501 acatcgatct ggtggtccag aggacgcaga actacatgca agagctaatg gagaatgcgg
     1561 tattcacttt tgagcagttg ctttccccac atctccaagg agaggcctcc aaaaccacag
     1621 ccgccattga gaaggttaag ctccgagtct taaagcaata tgattatgac agcagcacca
     1681 tccggaagag gatatttcaa gaggcgctgg ttcaaatcac acttcccacc gtgcagaagg
     1741 cactggcgtc cgtgtgcaaa ccagagcttc agaaatatga gcagttcatc tttgcagatc
     1801 acaccaatat gatccatgtt gaaaatgtct acgaggagat tttacatcag atcctccttg
     1861 atgaaactct gaaagtgata aaggaagctg ctatcctgaa gaaacacaat ttatttgaag
     1921 acaacatggc cttgcccagt gaaagcgtgt ccagcttaac tgatctaaaa actcctgcag
     1981 ggtcaaacca ggccagccct gccaggagag cctcggccat tctgccggaa gttccagata
     2041 gtgagatcct gagtaacgag gtattccagg agtcagggga aaaaaaacag ccgggggtcc
     2101 ctagtccatt ggccaaagga gaaagccttt gtttccctgt gcccagcccg cccccagatg
     2161 gggacgggca ggtcatcatt tcaagcacag atgaccctgt tgtgaatccg gtggctgcag
     2221 aagacacagc agaagccctg ggcaaacact catcagagct ggagtttgga gagactcatg
     2281 agggccaaga acccacccag gaaaagccag agcccacctc cgccttgggc tccttgaaag
     2341 agctcagaaa tttgttgacg gtgaccactg aagtaccagg ggaatctgcc acacctgaga
     2401 ttgaaaaaga tacaagtaag gagacccttg ttccccaaga aattgaaaaa gaagaggaaa
     2461 tgacccaaat ctacacagag accaatcaag cagctgcctc tagtcaggtc agcagcgaag
     2521 agagtgaagt caatgagagg gaggtccatc ctccctctcc cgaggctgag gctgatgggg
     2581 tagagttggg ggcatctcca gaggctcagc cagcctgcgg ggggctcagc gagggcacca
     2641 ggggcccagg ccccttagag gagccagcgg aggccgggga gcccacggag agggagctca
     2701 cggccgggtc ctccggactg gacgcccttg agggaggagg gcccaggtgc gctgtggagg
     2761 ctgaggctat gccccaagaa ggttgcaagt taagttgtga ccccgtcagc cccagtgaga
     2821 gccaggtttc tctggaagaa gaggcggtgg gagggaatca cagcacagcc caggctaccg
     2881 ctagcgtgga ggcaaagaag agtaaggcca cccgcgttca cgagtgtcag tgggtggttg
     2941 agagtgacgc agacacctat agcctagatt cacagagaga agatccccca gagcggccct
     3001 cggaggagtg aaagggacaa tttgccaaaa gtctttcttt gaacaaactc agccgaaagg
     3061 atacagctca aggatacact ttggggttgc ctgcaagttg ttaccagaa
//
LOCUS       XM_032603338            6419 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus niban apoptosis regulator 1 (NIBAN1),
            transcript variant X2, mRNA.
ACCESSION   XM_032603338
VERSION     XM_032603338.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6419
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6419
                     /gene="NIBAN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739161"
     CDS             214..2907
                     /gene="NIBAN1"
                     /codon_start=1
                     /product="protein Niban 1 isoform X2"
                     /protein_id="XP_032459229.1"
                     /db_xref="GeneID:116739161"
                     /translation="MGGSASSQLDEGKCAYIRGKTEAAIKNFSPYYSRQYSVAFCNYV
                     RSEVEQQRDLTSQFLKTKPPLEPGTVLYEAELSQFAEDIKKWKERYVVVKNDFAVESY
                     ENKEAYQRGAPPKSRILPAGGKVLTSEDEYGLLSDRHFPDPIASSEKENMQPFVVLPK
                     EFPVYLWQPFLRHGYFCFQDAAEQRKFSALLSDCIRHLNHDYMKQTTFEVQAFLEAVQ
                     FFRQEKGHYGSWEMITGDEVQILSNLVMEELMPTLQTDILPKMKGKKNDRKRAWFGLL
                     EEAYNLVQHQVSEGLSALKEECRALTKGLEGTIRSDMDQIVNSKNFLIGKIKAMVAQP
                     AERSCAESVQPFLASILEELMGPVSSGFSEVRSLFEKEVDELSQNFQTTKDSAQLKEH
                     LDWFMNLPLDSVKMEPCYSKVNLLQEHLQDLKSRFRFPHIDLVVQRTQNYMQELMENA
                     VFTFEQLLSPHLQGEASKTTAAIEKVKLRVLKELQKYEQFIFADHTNMIHVENVYEEI
                     LHQILLDETLKVIKEAAILKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRAS
                     AILPEVPDSEILSNEVFQESGEKKQPGVPSPLAKGESLCFPVPSPPPDGDGQVIISST
                     DDPVVNPVAAEDTAEALGKHSSELEFGETHEGQEPTQEKPEPTSALGSLKELRNLLTV
                     TTEVPGESATPEIEKDTSKETLVPQEIEKEEEMTQIYTETNQAAASSQVSSEESEVNE
                     REVHPPSPEAEADGVELGASPEAQPACGGLSEGTRGPGPLEEPAEAGEPTERELTAGS
                     SGLDALEGGGPRCAVEAEAMPQEGCKLSCDPVSPSESQVSLEEEAVGGNHSTAQATAS
                     VEAKKSKATRVHECQWVVESDADTYSLDSQREDPPERPSEE"
     misc_feature    238..1788
                     /gene="NIBAN1"
                     /note="Niban-like protein; Region: Niban-like; cd23949"
                     /db_xref="CDD:469558"
     misc_feature    <1831..2712
                     /gene="NIBAN1"
                     /note="Family of unknown function (DUF5585); Region:
                     DUF5585; pfam17823"
                     /db_xref="CDD:465521"
ORIGIN      
        1 cagcccacag atcttcagag ggcgcggacc cgtaggaggc gcccgagaag gccgcgcctc
       61 ttggaggaag tttgcccttt aattgcagag ctcagatctc cgtctcatca acttccagga
      121 gcgggcggcg ggcgccgacg ggagtgtcag tccctcccgc ccagggactg ggtcgggcag
      181 ccgcggcgtt cagcgttctc ccgcaccgtc gccatgggcg gctcggcctc cagtcagttg
      241 gacgagggca agtgcgccta catccgaggg aaaactgagg ctgctatcaa aaacttcagt
      301 ccctattaca gtcgccagta ctctgtggct ttctgcaatt atgtacgcag tgaagtagaa
      361 cagcaaagag atttaacatc acaatttttg aagaccaagc caccattgga gcctggaact
      421 gttttgtatg aagcagagct atcacagttt gctgaggaca taaagaaatg gaaggagaga
      481 tatgttgtgg ttaaaaatga ctttgctgtg gaaagctatg agaacaaaga ggcctatcag
      541 agaggagctc cccctaaaag ccgaattctt ccagctggtg gcaaggtgtt aacctcagaa
      601 gatgaatacg gtttattatc tgatcggcat ttcccagacc ccattgcatc cagtgagaag
      661 gagaacatgc agccctttgt ggtcctgccc aaggaattcc cggtgtacct gtggcagcca
      721 ttcctcagac atggctactt ctgctttcag gatgccgctg agcagaggaa gttcagtgct
      781 ctcctgagtg actgcatcag acatctaaat catgattaca tgaagcagac gacatttgaa
      841 gtccaagcct ttttagaagc tgtgcaattc ttccgacagg agaagggaca ctatggctcg
      901 tgggaaatga tcactgggga tgaagtccag atcctgagta acctggtaat ggaggagctc
      961 atgccaaccc ttcagacaga catcctgcct aaaatgaagg ggaagaagaa cgacagaaag
     1021 agggcctggt tcggtctcct cgaagaggcc tacaacctgg ttcagcatca agtttcagaa
     1081 ggattaagtg cattgaagga ggaatgcagg gctctgacaa aaggcctgga aggcaccatc
     1141 cgttcagaca tggatcagat tgtgaactca aagaactttt taattggaaa gatcaaagcg
     1201 atggtggctc agccagcaga gagaagttgt gcagagagtg tgcaaccatt cctggcatcc
     1261 attctggagg agctcatggg accggtgagc tcaggattca gtgaagtacg ctcactcttt
     1321 gaaaaagaag tggatgaact tagccagaac tttcagacca ccaaagacag tgcccagcta
     1381 aaggagcatc tagactggtt tatgaatctt ccattggatt ccgtgaagat ggaaccttgt
     1441 tatagtaaag tcaacctgct tcaggagcac ctgcaggatc tcaagagccg cttcagattc
     1501 ccccacatcg atctggtggt ccagaggacg cagaactaca tgcaagagct aatggagaat
     1561 gcggtattca cttttgagca gttgctttcc ccacatctcc aaggagaggc ctccaaaacc
     1621 acagccgcca ttgagaaggt taagctccga gtcttaaagg agcttcagaa atatgagcag
     1681 ttcatctttg cagatcacac caatatgatc catgttgaaa atgtctacga ggagatttta
     1741 catcagatcc tccttgatga aactctgaaa gtgataaagg aagctgctat cctgaagaaa
     1801 cacaatttat ttgaagacaa catggccttg cccagtgaaa gcgtgtccag cttaactgat
     1861 ctaaaaactc ctgcagggtc aaaccaggcc agccctgcca ggagagcctc ggccattctg
     1921 ccggaagttc cagatagtga gatcctgagt aacgaggtat tccaggagtc aggggaaaaa
     1981 aaacagccgg gggtccctag tccattggcc aaaggagaaa gcctttgttt ccctgtgccc
     2041 agcccgcccc cagatgggga cgggcaggtc atcatttcaa gcacagatga ccctgttgtg
     2101 aatccggtgg ctgcagaaga cacagcagaa gccctgggca aacactcatc agagctggag
     2161 tttggagaga ctcatgaggg ccaagaaccc acccaggaaa agccagagcc cacctccgcc
     2221 ttgggctcct tgaaagagct cagaaatttg ttgacggtga ccactgaagt accaggggaa
     2281 tctgccacac ctgagattga aaaagataca agtaaggaga cccttgttcc ccaagaaatt
     2341 gaaaaagaag aggaaatgac ccaaatctac acagagacca atcaagcagc tgcctctagt
     2401 caggtcagca gcgaagagag tgaagtcaat gagagggagg tccatcctcc ctctcccgag
     2461 gctgaggctg atggggtaga gttgggggca tctccagagg ctcagccagc ctgcgggggg
     2521 ctcagcgagg gcaccagggg cccaggcccc ttagaggagc cagcggaggc cggggagccc
     2581 acggagaggg agctcacggc cgggtcctcc ggactggacg cccttgaggg aggagggccc
     2641 aggtgcgctg tggaggctga ggctatgccc caagaaggtt gcaagttaag ttgtgacccc
     2701 gtcagcccca gtgagagcca ggtttctctg gaagaagagg cggtgggagg gaatcacagc
     2761 acagcccagg ctaccgctag cgtggaggca aagaagagta aggccacccg cgttcacgag
     2821 tgtcagtggg tggttgagag tgacgcagac acctatagcc tagattcaca gagagaagat
     2881 cccccagagc ggccctcgga ggagtgaaag ggacaatttg ccaaaagtct ttctttgaac
     2941 aaactcagcc gaaaggatac agctcaagga tacactttgg ggttgcctgc aagttgttac
     3001 cagaacaaaa agaaaaaaaa ttacgaagta cttccttaat ttgtgtaatg aagctagagg
     3061 gaatgcgcat agagcatgag cgctgaggca aacctttgtg cagtgcaact gttctgccat
     3121 gaattactgc tttagcattt tgacaggaat tacaaaggta acggagtgtg tggggtgaga
     3181 ggcagctgag ggagtcctgg gagggagggt gctgcagaga agacagtcgg agcgctttgc
     3241 acgttctcct ctaatgcact tcaaggcttc taaatttctt gtaagaatgc aaaggcatac
     3301 tgtaaatgca gctttgccgt ctacttacta taccagcctc acggtctctt aaggactcag
     3361 cattagtcca cattcaggct gcaagaaagg gaggtggtga acgtcagtcc cccctgctgt
     3421 gtgcagcccc acagagcctg agagaccatg cccgagacct ctcaggggaa gctgagatgg
     3481 ggagcagaaa cggaggaagg ttgtggtctg tgcagctgtc tgggctgctt cctaattgtg
     3541 ctaccaattt cttactaatt aatcttgtta attcttataa attaatcact ttttggagaa
     3601 aatcagatga gacaaggaaa tttcctgggc atgtttacgc ctgaaagcat tccaaattag
     3661 ccttagactg tgcagagaaa gagcttagct gaattatcga gcataaagcc taccaattaa
     3721 acagacatca tttgaacagc tatactaggc cacatgctgt gttaggtaca gtcacaacaa
     3781 caacaacgaa aggacacaag aaagaaagaa aaaaatgaaa agataaggtg cttgtctagt
     3841 ataaattaaa aggcccagag gaacttaatc taaaagaaaa aatacaacaa ctttctgtct
     3901 ttccattgaa acagtcctgg tttattctca ggagggaatg aagtgaatac agtgaagtaa
     3961 aaaagaaaga aagtagaaaa gagggaaagc aaagggaacg agaaaggaag agagagaggg
     4021 agagagaaac caagctatag atcattaagt tccaaagatg ttaccagaaa aggaaattat
     4081 ttgctcagca agttgttatg tcccaggtgc tgggatactg tggtgaaaat gactctgctc
     4141 ctttctccca gagcttacac tttaatggaa atagacggaa atacgtcttc taaatggatc
     4201 ttgaccttta cctgttaatg ttaaaggtgg aatggactta cttgtaaaag attaaaaaga
     4261 tgtgtcctct tgtccttcag gaaaatacca gattatttcc tgaaagcttt agtcccagtt
     4321 ccacatcttg aagtttcctt ccacaaattt taatattaga tcccaacata ttgtcctaag
     4381 agcttgtttt gatcatcaaa acaagtagtt tatatcagtt ttttaaagaa tttgtcccat
     4441 agtttgacca tttagccagg aattaaaatg tctccctctc cacctctcca tgaagaattg
     4501 cttggatttc taggtcataa gggatgtaga ataatcagta tcagtatact ctcatattga
     4561 attgtttcaa cttctttttc agtgtttaga tcctcacgtt tgtgaaggat ctcattgtag
     4621 gtaaagaagg tggaggtcac tcctcccctg gtccccgcag tgcccgtgct cactcatgtc
     4681 cttgcatttg gcttagaaca ttacaattat gtttacttcc tgtctctcca ggggctcctt
     4741 ccttcaagga cagacaccag ggtttagtca tcctctgtac ttcctgcaca cacagtcttg
     4801 aataatggct ccctgccttc tcaagtcact tgaatatccc tagtgcctaa caaggaactg
     4861 cttgtgtccc agtgctcagg aaatgtgaga actgatcacc caccacacgg ctgtgccggg
     4921 gctatttggg gcttttgctg tcaggcaagg agatgttttt acttgggctt tctgcccttg
     4981 gggagtcttc tcttaaatca agtccaaagt ccaaggggca ggtggccaga tggtccgatg
     5041 tgctgcccag taaggccggg agccaaagga gcagtaccca gcctcgccca ggactgccct
     5101 tctctccggg agaattgtga caaggaagcg aggaggtcag agcccaggct gagcccacac
     5161 cggagcttcc cagcttcatc cctttcctca cttcagggct tttggcacac cttggaaagc
     5221 taagagattt ttccaaacct aaatgagagt acctgtcact tcattagatg gatgaacatc
     5281 aatcagtgcc ctccctttac ccatccgtag accagaggcg accagacacc aagtggaagg
     5341 atgtagctga gaacacaagg aatttttctg tacatatttc acaaaagaca agtccgctag
     5401 attaagtccg atgattgttc catttgaaga tggaacagga aattaaagtg cattaaaatt
     5461 tccttatctg ttttaacatg ttgagtggaa tagcttcata ttaccatgag tttgtcttgc
     5521 ttttaataca gacttatctg tattgcttca gtggtttcca ggttggagca aggttattgt
     5581 gatttaaatg agcagctcga aaagcctctg caggcagctt tggggatctg tcttatgggc
     5641 aaatcatttg aaacgcataa aacctcaaga catggtcttc agcaaaaatt ccatgacttt
     5701 agttatgtta ccattgactt ttcacaaaga aagaatattt tccttgaaaa ataattagct
     5761 tgtcattttt ttcctttgca gcttaaagac agtagtgctt tgcattatgc agagtaaact
     5821 ctcctttcaa aaaaaaacgt attttagaga ccacaaggat aagattccag tttgtccaaa
     5881 agctttataa agaggctgag tgtgaagaac tacaggtctt caggctcgat cttctacatt
     5941 ttattacaga gattctcaag tctggttttg taaccctcag attggagcca gtgatttcaa
     6001 agggttccac agttctctcc gacaagtgat tttatttctt tataaaaagc gataagtgat
     6061 atatgctaca tagcaatttt aatttgggga agaggaggac atcactgaat aaataataca
     6121 atttcactag gtaaaaaagt tggctacatg tgccttctta ctttaccata aacaaatggg
     6181 ttttacgatt tgccttctga agtctgcaac ctcagcaaag aaatctacac agtggattga
     6241 tttttctggt cactatagaa agcatataaa cttaaaacac tttgtaacga catatttacc
     6301 ctgccaagtg cctatattgc aataaaatgt ttgtccttaa agaagtgtcc aatgtcatat
     6361 ttatttggaa tggggctggt ttcatctttt aagcatatgt catacttgag ctgggagga
//
LOCUS       XM_032603346            2737 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus niban apoptosis regulator 1 (NIBAN1),
            transcript variant X3, mRNA.
ACCESSION   XM_032603346
VERSION     XM_032603346.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2737
                     /gene="NIBAN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 43 long SRA reads, 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739161"
     CDS             291..2639
                     /gene="NIBAN1"
                     /codon_start=1
                     /product="protein Niban 1 isoform X3"
                     /protein_id="XP_032459237.1"
                     /db_xref="GeneID:116739161"
                     /translation="MQPFVVLPKEFPVYLWQPFLRHGYFCFQDAAEQRKFSALLSDCI
                     RHLNHDYMKQTTFEVQAFLEAVQFFRQEKGHYGSWEMITGDEVQILSNLVMEELMPTL
                     QTDILPKMKGKKNDRKRAWFGLLEEAYNLVQHQVSEGLSALKEECRALTKGLEGTIRS
                     DMDQIVNSKNFLIGKIKAMVAQPAERSCAESVQPFLASILEELMGPVSSGFSEVRSLF
                     EKEVDELSQNFQTTKDSAQLKEHLDWFMNLPLDSVKMEPCYSKVNLLQEHLQDLKSRF
                     RFPHIDLVVQRTQNYMQELMENAVFTFEQLLSPHLQGEASKTTAAIEKVKLRVLKQYD
                     YDSSTIRKRIFQEALVQITLPTVQKALASVCKPELQKYEQFIFADHTNMIHVENVYEE
                     ILHQILLDETLKVIKEAAILKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRA
                     SAILPEVPDSEILSNEVFQESGEKKQPGVPSPLAKGESLCFPVPSPPPDGDGQVIISS
                     TDDPVVNPVAAEDTAEALGKHSSELEFGETHEGQEPTQEKPEPTSALGSLKELRNLLT
                     VTTEVPGESATPEIEKDTSKETLVPQEIEKEEEMTQIYTETNQAAASSQVSSEESEVN
                     EREVHPPSPEAEADGVELGASPEAQPACGGLSEGTRGPGPLEEPAEAGEPTERELTAG
                     SSGLDALEGGGPRCAVEAEAMPQEGCKLSCDPVSPSESQVSLEEEAVGGNHSTAQATA
                     SVEAKKSKATRVHECQWVVESDADTYSLDSQREDPPERPSEE"
     misc_feature    <294..1520
                     /gene="NIBAN1"
                     /note="Niban-like protein; Region: Niban-like; cd23949"
                     /db_xref="CDD:469558"
     misc_feature    <1563..2444
                     /gene="NIBAN1"
                     /note="Family of unknown function (DUF5585); Region:
                     DUF5585; pfam17823"
                     /db_xref="CDD:465521"
ORIGIN      
        1 gggcaagtgc gcctacatcc gagccaccat tggagcctgg aactgttttg tatgaagcag
       61 agctatcaca gtttgctgag gacataaaga aatggaagga gagatatgtt gtggttaaaa
      121 atgactttgc tgtggaaagc tatgagaaca aagaggccta tcagagagga gctcccccta
      181 aaagccgaat tcttccagct ggtggcaagg tgttaacctc agaagatgaa tacggtttat
      241 tatctgatcg gcatttccca gaccccattg catccagtga gaaggagaac atgcagccct
      301 ttgtggtcct gcccaaggaa ttcccggtgt acctgtggca gccattcctc agacatggct
      361 acttctgctt tcaggatgcc gctgagcaga ggaagttcag tgctctcctg agtgactgca
      421 tcagacatct aaatcatgat tacatgaagc agacgacatt tgaagtccaa gcctttttag
      481 aagctgtgca attcttccga caggagaagg gacactatgg ctcgtgggaa atgatcactg
      541 gggatgaagt ccagatcctg agtaacctgg taatggagga gctcatgcca acccttcaga
      601 cagacatcct gcctaaaatg aaggggaaga agaacgacag aaagagggcc tggttcggtc
      661 tcctcgaaga ggcctacaac ctggttcagc atcaagtttc agaaggatta agtgcattga
      721 aggaggaatg cagggctctg acaaaaggcc tggaaggcac catccgttca gacatggatc
      781 agattgtgaa ctcaaagaac tttttaattg gaaagatcaa agcgatggtg gctcagccag
      841 cagagagaag ttgtgcagag agtgtgcaac cattcctggc atccattctg gaggagctca
      901 tgggaccggt gagctcagga ttcagtgaag tacgctcact ctttgaaaaa gaagtggatg
      961 aacttagcca gaactttcag accaccaaag acagtgccca gctaaaggag catctagact
     1021 ggtttatgaa tcttccattg gattccgtga agatggaacc ttgttatagt aaagtcaacc
     1081 tgcttcagga gcacctgcag gatctcaaga gccgcttcag attcccccac atcgatctgg
     1141 tggtccagag gacgcagaac tacatgcaag agctaatgga gaatgcggta ttcacttttg
     1201 agcagttgct ttccccacat ctccaaggag aggcctccaa aaccacagcc gccattgaga
     1261 aggttaagct ccgagtctta aagcaatatg attatgacag cagcaccatc cggaagagga
     1321 tatttcaaga ggcgctggtt caaatcacac ttcccaccgt gcagaaggca ctggcgtccg
     1381 tgtgcaaacc agagcttcag aaatatgagc agttcatctt tgcagatcac accaatatga
     1441 tccatgttga aaatgtctac gaggagattt tacatcagat cctccttgat gaaactctga
     1501 aagtgataaa ggaagctgct atcctgaaga aacacaattt atttgaagac aacatggcct
     1561 tgcccagtga aagcgtgtcc agcttaactg atctaaaaac tcctgcaggg tcaaaccagg
     1621 ccagccctgc caggagagcc tcggccattc tgccggaagt tccagatagt gagatcctga
     1681 gtaacgaggt attccaggag tcaggggaaa aaaaacagcc gggggtccct agtccattgg
     1741 ccaaaggaga aagcctttgt ttccctgtgc ccagcccgcc cccagatggg gacgggcagg
     1801 tcatcatttc aagcacagat gaccctgttg tgaatccggt ggctgcagaa gacacagcag
     1861 aagccctggg caaacactca tcagagctgg agtttggaga gactcatgag ggccaagaac
     1921 ccacccagga aaagccagag cccacctccg ccttgggctc cttgaaagag ctcagaaatt
     1981 tgttgacggt gaccactgaa gtaccagggg aatctgccac acctgagatt gaaaaagata
     2041 caagtaagga gacccttgtt ccccaagaaa ttgaaaaaga agaggaaatg acccaaatct
     2101 acacagagac caatcaagca gctgcctcta gtcaggtcag cagcgaagag agtgaagtca
     2161 atgagaggga ggtccatcct ccctctcccg aggctgaggc tgatggggta gagttggggg
     2221 catctccaga ggctcagcca gcctgcgggg ggctcagcga gggcaccagg ggcccaggcc
     2281 ccttagagga gccagcggag gccggggagc ccacggagag ggagctcacg gccgggtcct
     2341 ccggactgga cgcccttgag ggaggagggc ccaggtgcgc tgtggaggct gaggctatgc
     2401 cccaagaagg ttgcaagtta agttgtgacc ccgtcagccc cagtgagagc caggtttctc
     2461 tggaagaaga ggcggtggga gggaatcaca gcacagccca ggctaccgct agcgtggagg
     2521 caaagaagag taaggccacc cgcgttcacg agtgtcagtg ggtggttgag agtgacgcag
     2581 acacctatag cctagattca cagagagaag atcccccaga gcggccctcg gaggagtgaa
     2641 agggacaatt tgccaaaagt ctttctttga acaaactcag ccgaaaggat acagctcaag
     2701 gatacacttt ggggttgcct gcaagttgtt accagaa
//
LOCUS       XM_032603359             986 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus reactive oxygen species modulator 1-like
            (LOC116739174), mRNA.
ACCESSION   XM_032603359
VERSION     XM_032603359.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..986
                     /gene="LOC116739174"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 85% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739174"
     CDS             1..234
                     /gene="LOC116739174"
                     /codon_start=1
                     /product="reactive oxygen species modulator 1-like"
                     /protein_id="XP_032459250.1"
                     /db_xref="GeneID:116739174"
                     /translation="MLVALSPYAQFQPSCFHLVKMGFVMGCTAGMAAGALFSIFSCLR
                     IGIRGRGLMGGVRKTMMQSGGTFGTFMAIGMDI"
     misc_feature    40..231
                     /gene="LOC116739174"
                     /note="Reactive mitochondrial oxygen species modulator 1;
                     Region: Romo1; pfam10247"
                     /db_xref="CDD:431168"
ORIGIN      
        1 atgctggtgg ccttgagtcc ctacgcacag ttccagccaa gctgcttcca cctcgtgaag
       61 atgggttttg tgatgggttg caccgcgggc atggcggcag gggcgctctt cagcatcttt
      121 tcctgtctca ggatcggaat acggggtcgg ggtctgatgg gcggtgtcag gaaaaccatg
      181 atgcagagcg gcggcacctt tggcacattc atggccatcg ggatggacat ctgatgctaa
      241 tcagggcagt ggttgcccac tacatccacc ccctcacatc agtcccagtc cgtgtaccat
      301 aataaaacaa gtctttgatt taagaaaaaa atttgacaaa gaccagacca gcatagttac
      361 ccttgtgaaa tctataacca tgttattgcc gtagataaac agattatagg gttcttctga
      421 aggcaggact ctgaactacc ttgtacttgg acaagttagt tgttagttta gtactagtgc
      481 acaaagaaaa gagtgccacc tgctggacca gcaatgatac tccctccctg gccagggcta
      541 catggcaagg aagacagaca ctctgatcca aatcaaattc atatgcttgc ctttaaatta
      601 gtttaacaga catttggcat tattcagctg ttccttataa gcttcttttg ctcagctgac
      661 aaatgaattg ttcttccaga atagactttt cctgtcgaat ttatttgggg ggctaattca
      721 attattttat atttcaagat tatacttact gctcataaca catgaattat aatccatttt
      781 gtaaagcact gtctcttgaa tttttcctct tgcagtctca gttcactctt ttctttacaa
      841 tgcaagtcac caatacatta attcccctag tcatgtatca atagttgtga aaagtaatat
      901 gccaaggctc tgacttctat tctggcatgc ttgaataggg agatgggagg aagtattggc
      961 aaggaacccc agggggatgc aggaac
//
LOCUS       XR_004345479            1434 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739182
            (LOC116739182), ncRNA.
ACCESSION   XR_004345479
VERSION     XR_004345479.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1434
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1434
                     /gene="LOC116739182"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739182"
     ncRNA           1..1434
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739182"
                     /product="uncharacterized LOC116739182"
                     /db_xref="GeneID:116739182"
ORIGIN      
        1 cttgacgttt ctatgctttt cagtgaaaca aagttttata aaataaatgc catcaacata
       61 ttttgctaat aattaaatgc aagccccttc tcacaacgtt ctaatacatt gttctttcag
      121 tccactaacc attggtgtaa ataacaagca tgtagccaaa tttgtaagat taaggcagac
      181 ttggtttagc tctttttctc atataaacaa atcatccatc ctttccccat tttaaacaaa
      241 caacagcaaa gggatacttg accaggtttt attccgacag tagaggttgt tgatgatctt
      301 ctacctctca aagcaccaga gcagaagtct ggaaaatcag ttaaattgct ctcaagtgcc
      361 ttaatttgat atccttttta aatggtttta aatgttgtgg tgactgaaag caaatttgga
      421 ataaagacac taaataaatg ctttcctctt aggaaatggt tcaggggcca gaaagaggta
      481 ccagaaagaa catttttttg cagaattagg gtaaaaccta gagtataata cctagtttag
      541 aaggtatttc taaagccaga aaaactaaat tcacaagata accaactgtt aggtagtggt
      601 tgtcggcaag gtttgcgggg gagggaagag aaagaggcca attacacgca ggagataaag
      661 aatcatgatt tcctgcagtt tcagctcagt ttgggttttg ttttcttctg cctcacactc
      721 tttactgtat cactatattc cagaaaggct cccgaatgag tttctcccca taaacaactt
      781 tagcaactgt tacccaatat gccagtgttc ctctttcggt tttccccaac ctctcacctc
      841 cgggaagaga agggaaccgc acaacctggg ggcctgatga cattgtcctt tctgcctctg
      901 atgaaatcat cccacaagtg acactacgaa gctcaagtaa agctgtggcc gacgctgcgt
      961 cttacaaaac caggccaggg aaattctgcc ttatatgccg ggaatcccca ggggaatctc
     1021 tagaagcgag gggacatccc cactgttctc tctgcggcaa gttcagaaag agctcagaac
     1081 tgagtccaat gccaggggta aaagctttag aaatcctcat tctgatactg acttgccaca
     1141 tgacttgggg aaataaagtt taaagaatat gtagaagatg gaatccaact tctcatcagt
     1201 gattcttgag gggaagtttc agaagctcca agaatgtgtg gaatttttat tagaaaaata
     1261 ttttgtttta attgagaaac attacttttg ctcaacctac ttttcaaata tgaatcatca
     1321 caattttatg tagacctcca gcattgtgca agaccttaga catagcatag aaaccgataa
     1381 aggcttaaaa ctaaggatga caaactctag acccaatggg gtagttagat gtgt
//
LOCUS       XM_032603378            1590 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RNA 3'-terminal phosphate cyclase (RTCA),
            transcript variant X1, mRNA.
ACCESSION   XM_032603378
VERSION     XM_032603378.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1590
                     /gene="RTCA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 1 long SRA read, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739186"
     CDS             208..1308
                     /gene="RTCA"
                     /codon_start=1
                     /product="RNA 3'-terminal phosphate cyclase isoform X1"
                     /protein_id="XP_032459269.1"
                     /db_xref="GeneID:116739186"
                     /translation="MAGPRVEVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRS
                     TPGLRPQHLSGLEMIRDFCDGQLEGAEIGSTEIMFTPEKIKGGVHTADTKTAGSVCLL
                     MQVSMPCALFAACPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGY
                     YPKGGGEVIIRMSPVKQLNPINLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCI
                     RKEIRDLYVNIQPVQETKDQAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIE
                     AAEMLLANLRHGGAVDEYLQDQLIIFMALASGISRIKTGPVTLHTQTAIHFAEQLAKA
                     KFTVKKSEDEEDASKDTYIIECQGIGMTNPNL"
     misc_feature    223..1218
                     /gene="RTCA"
                     /note="RNA 3'-phosphate cyclase; Region: RNA_3prim_cycl;
                     TIGR03399"
                     /db_xref="CDD:274563"
ORIGIN      
        1 gcctggcaaa cccggcttct gcacgcagag cggcttggtt tgggtggggc gttcccggag
       61 ccggcgcgtc ctccgccttt acgcggagcc cagcgacccc gagcgaggac aacgcctccg
      121 gagctgcgag gcagggccct gcgtctcctc ttcctcccgc tcgggccgag gctgagtcgc
      181 ggttggccag gccccaggac gacccccatg gcgggcccgc gggtcgaggt ggacggcagc
      241 atcatggaag ggggcgggca gatcttgagg gtgtctacgg ctctgagctg tctcctgggc
      301 ctccccttgc gggtgcagaa gatccgagca ggccgcagca cgccgggcct caggcctcag
      361 catttatctg gactggaaat gattcgagat ttctgtgatg ggcaactgga gggggcagaa
      421 atcggctcaa cagaaataat gtttacgcca gagaagatca aaggtggagt ccacacagca
      481 gataccaaga cagcagggag tgtatgcctc ttgatgcagg tctcaatgcc ctgtgctctc
      541 tttgctgctt gtccatcaga acttcgtttg aaaggtggaa ctaatgctga aatggcacca
      601 cagattgatt acacagccat ggttttcaag ccaattgttg aaaaatttgg tttcacattt
      661 aattgtgaca ttaaaatgag gggctactac ccaaaaggag gtggtgaagt gattatccga
      721 atgtcgccag ttaaacagtt gaacccaata aatttaactg accgtggctc tgtgactaag
      781 atatatggaa gagcttttgt tgctggtgtt ttgccattta aagtagcaaa agatatggca
      841 gcggcagccg taagatgcat cagaaaggag attagggatc tgtatgttaa catccagcct
      901 gttcaggaaa ctaaagacca agcttttggc aatggaaatg gaataatcat tattgctgag
      961 acatccactg gctgtttgtt cgctggatca tcgcttggta aacgaggtgt taatgcagac
     1021 aaggttggaa ttgaagctgc tgaaatgctg ttagcaaatc ttagacatgg cggtgctgtg
     1081 gatgagtatc tgcaagacca gctgatcatt ttcatggcat tagccagtgg aatttccaga
     1141 ataaaaacag gaccagttac actccatacc caaacggcta tacattttgc tgaacaacta
     1201 gcaaaggcta aatttactgt gaagaaatca gaagatgaag aagatgcttc taaagatact
     1261 tacattattg agtgccaagg aatcgggatg acaaatccaa atctataggg tatttgcctc
     1321 ttaaatgata cctcaatgat acattgcact aatcatttca taaatattat atagaacaat
     1381 gaataagcag taacttatta taggccctga cttaaatttg gagatgaaat acagaaagtt
     1441 ctagatttgc tgagactgct tcgtcctatt aatctcactt tgactgtctt ctgagataga
     1501 tagggacagc gaaatttaag agttggtgaa tatgtatgat agctgattgc agtattaaag
     1561 tattgaaata aaatattctt ttcacctgaa
//
LOCUS       XM_032603387            1433 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RNA 3'-terminal phosphate cyclase (RTCA),
            transcript variant X2, mRNA.
ACCESSION   XM_032603387
VERSION     XM_032603387.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1433
                     /gene="RTCA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739186"
     CDS             195..1151
                     /gene="RTCA"
                     /codon_start=1
                     /product="RNA 3'-terminal phosphate cyclase isoform X2"
                     /protein_id="XP_032459278.1"
                     /db_xref="GeneID:116739186"
                     /translation="MAGPRVEVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRS
                     TPGLRSVCLLMQVSMPCALFAACPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGFT
                     FNCDIKMRGYYPKGGGEVIIRMSPVKQLNPINLTDRGSVTKIYGRAFVAGVLPFKVAK
                     DMAAAAVRCIRKEIRDLYVNIQPVQETKDQAFGNGNGIIIIAETSTGCLFAGSSLGKR
                     GVNADKVGIEAAEMLLANLRHGGAVDEYLQDQLIIFMALASGISRIKTGPVTLHTQTA
                     IHFAEQLAKAKFTVKKSEDEEDASKDTYIIECQGIGMTNPNL"
     misc_feature    210..1061
                     /gene="RTCA"
                     /note="RNA 3'-phosphate cyclase; Region: RNA_3prim_cycl;
                     TIGR03399"
                     /db_xref="CDD:274563"
ORIGIN      
        1 ggcttctgca cgcagagcgg cttggtttgg gtggggcgtt cccggagccg gcgcgtcctc
       61 cgcctttacg cggagcccag cgaccccgag cgaggacaac gcctccggag ctgcgaggca
      121 gggccctgcg tctcctcttc ctcccgctcg ggccgaggct gagtcgcggt tggccaggcc
      181 ccaggacgac ccccatggcg ggcccgcggg tcgaggtgga cggcagcatc atggaagggg
      241 gcgggcagat cttgagggtg tctacggctc tgagctgtct cctgggcctc cccttgcggg
      301 tgcagaagat ccgagcaggc cgcagcacgc cgggcctcag gagtgtatgc ctcttgatgc
      361 aggtctcaat gccctgtgct ctctttgctg cttgtccatc agaacttcgt ttgaaaggtg
      421 gaactaatgc tgaaatggca ccacagattg attacacagc catggttttc aagccaattg
      481 ttgaaaaatt tggtttcaca tttaattgtg acattaaaat gaggggctac tacccaaaag
      541 gaggtggtga agtgattatc cgaatgtcgc cagttaaaca gttgaaccca ataaatttaa
      601 ctgaccgtgg ctctgtgact aagatatatg gaagagcttt tgttgctggt gttttgccat
      661 ttaaagtagc aaaagatatg gcagcggcag ccgtaagatg catcagaaag gagattaggg
      721 atctgtatgt taacatccag cctgttcagg aaactaaaga ccaagctttt ggcaatggaa
      781 atggaataat cattattgct gagacatcca ctggctgttt gttcgctgga tcatcgcttg
      841 gtaaacgagg tgttaatgca gacaaggttg gaattgaagc tgctgaaatg ctgttagcaa
      901 atcttagaca tggcggtgct gtggatgagt atctgcaaga ccagctgatc attttcatgg
      961 cattagccag tggaatttcc agaataaaaa caggaccagt tacactccat acccaaacgg
     1021 ctatacattt tgctgaacaa ctagcaaagg ctaaatttac tgtgaagaaa tcagaagatg
     1081 aagaagatgc ttctaaagat acttacatta ttgagtgcca aggaatcggg atgacaaatc
     1141 caaatctata gggtatttgc ctcttaaatg atacctcaat gatacattgc actaatcatt
     1201 tcataaatat tatatagaac aatgaataag cagtaactta ttataggccc tgacttaaat
     1261 ttggagatga aatacagaaa gttctagatt tgctgagact gcttcgtcct attaatctca
     1321 ctttgactgt cttctgagat agatagggac agcgaaattt aagagttggt gaatatgtat
     1381 gatagctgat tgcagtatta aagtattgaa ataaaatatt cttttcacct gaa
//
LOCUS       XM_032603394            1592 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RNA 3'-terminal phosphate cyclase (RTCA),
            transcript variant X3, mRNA.
ACCESSION   XM_032603394
VERSION     XM_032603394.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1592
                     /gene="RTCA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739186"
     CDS             381..1310
                     /gene="RTCA"
                     /codon_start=1
                     /product="RNA 3'-terminal phosphate cyclase isoform X3"
                     /protein_id="XP_032459285.1"
                     /db_xref="GeneID:116739186"
                     /translation="MIRDFCDGQLEGAEIGSTEIMFTPEKIKGGVHTADTKTAGSVCL
                     LMQVSMPCALFAACPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRG
                     YYPKGGGEVIIRMSPVKQLNPINLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRC
                     IRKEIRDLYVNIQPVQETKDQAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGI
                     EAAEMLLANLRHGGAVDEYLQDQLIIFMALASGISRIKTGPVTLHTQTAIHFAEQLAK
                     AKFTVKKSEDEEDASKDTYIIECQGIGMTNPNL"
     misc_feature    381..1229
                     /gene="RTCA"
                     /note="This domain family includes the Enolpyruvate
                     transferase (EPT) family and the RNA 3' phosphate cyclase
                     family (RTPC). These 2 families differ in that EPT is
                     formed by 3 repeats of an alpha-beta structural domain
                     while RTPC has 3 similar repeats with a...; Region:
                     EPT_RTPC-like; cl00288"
                     /db_xref="CDD:444811"
ORIGIN      
        1 ggcttctgca cgcagagcgg cttggtttgg gtggggcgtt cccggagccg gcgcgtcctc
       61 cgcctttacg cggagcccag cgaccccgag cgaggacaac gcctccggag ctgcgaggca
      121 gggccctgcg tctcctcttc ctcccgctcg ggccgaggct gagtcgcggt tggccaggcc
      181 ccaggacgac ccccatggcg ggcccgcggg tcgaggtgga cggcagcatc atggaagggg
      241 gcgggcagat cttgagggtg tctacggctc tgagctgtct cctgggcctc cccttgcggg
      301 tgcagaagat ccgagcaggc cgcagcacgc cgggcctcag tattatgacc tgaaggcctc
      361 agcatttatc tggactggaa atgattcgag atttctgtga tgggcaactg gagggggcag
      421 aaatcggctc aacagaaata atgtttacgc cagagaagat caaaggtgga gtccacacag
      481 cagataccaa gacagcaggg agtgtatgcc tcttgatgca ggtctcaatg ccctgtgctc
      541 tctttgctgc ttgtccatca gaacttcgtt tgaaaggtgg aactaatgct gaaatggcac
      601 cacagattga ttacacagcc atggttttca agccaattgt tgaaaaattt ggtttcacat
      661 ttaattgtga cattaaaatg aggggctact acccaaaagg aggtggtgaa gtgattatcc
      721 gaatgtcgcc agttaaacag ttgaacccaa taaatttaac tgaccgtggc tctgtgacta
      781 agatatatgg aagagctttt gttgctggtg ttttgccatt taaagtagca aaagatatgg
      841 cagcggcagc cgtaagatgc atcagaaagg agattaggga tctgtatgtt aacatccagc
      901 ctgttcagga aactaaagac caagcttttg gcaatggaaa tggaataatc attattgctg
      961 agacatccac tggctgtttg ttcgctggat catcgcttgg taaacgaggt gttaatgcag
     1021 acaaggttgg aattgaagct gctgaaatgc tgttagcaaa tcttagacat ggcggtgctg
     1081 tggatgagta tctgcaagac cagctgatca ttttcatggc attagccagt ggaatttcca
     1141 gaataaaaac aggaccagtt acactccata cccaaacggc tatacatttt gctgaacaac
     1201 tagcaaaggc taaatttact gtgaagaaat cagaagatga agaagatgct tctaaagata
     1261 cttacattat tgagtgccaa ggaatcggga tgacaaatcc aaatctatag ggtatttgcc
     1321 tcttaaatga tacctcaatg atacattgca ctaatcattt cataaatatt atatagaaca
     1381 atgaataagc agtaacttat tataggccct gacttaaatt tggagatgaa atacagaaag
     1441 ttctagattt gctgagactg cttcgtccta ttaatctcac tttgactgtc ttctgagata
     1501 gatagggaca gcgaaattta agagttggtg aatatgtatg atagctgatt gcagtattaa
     1561 agtattgaaa taaaatattc ttttcacctg aa
//
LOCUS       XM_032603406            4314 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidase M20 domain containing 1
            (PM20D1), mRNA.
ACCESSION   XM_032603406
VERSION     XM_032603406.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4314
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4314
                     /gene="PM20D1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 4 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739202"
     CDS             132..1649
                     /gene="PM20D1"
                     /codon_start=1
                     /product="N-fatty-acyl-amino acid synthase/hydrolase
                     PM20D1"
                     /protein_id="XP_032459297.1"
                     /db_xref="GeneID:116739202"
                     /translation="MARPYVCLLALAAVLLLGIAAVSRSKGLRGKGQGHQRAPRIPSQ
                     FSQEERVAMKEALKGAIQIPTVSFSPEELNTTALAEFGEYIHKVFPTVFKTSFIRHEA
                     VGEYSHLFTVQGSDPSLQPYMLLAHIDVVPAPDEGWDVPPFSGLESDGFIYGRGTLDN
                     KNSLMAILQALELLLIRNYIPRRSFFIALGHDEEVSGVNGAQKISALLQARGIQLAFI
                     VDEGSSILDGFIPNLQKPFAMVSVSEKGAIDLMLQVNMTPGHSSAPPKETSIGILAAA
                     VSRLEQTPMPNMFGGGPFKMALQQLANEFPFPTNIVLSNLWLFQPLVSRLMERNYITN
                     ALVRTTTALTMFNAGVKVNVIPPVAQATVNFRIHPAQTVQELLKLAKDIVADDRIQFH
                     VLNAFDPLPVSPSDDQALGYQLLRQTIQSVFPEVNIVAPGTCIGNTDSRHYTNLTTGI
                     YRFNPIYLQPQSFSSIHGINEKISVQAYETQVKFIFEFIQNADADPRPVPHLHEL"
     misc_feature    294..1601
                     /gene="PM20D1"
                     /note="M20 Peptidase, carboxypeptidase yscS; Region:
                     M20_yscS; cd05674"
                     /db_xref="CDD:349923"
ORIGIN      
        1 ggccagccct gggaatggag tgagactaag gcagttgcgg gaattagagc agtgacaggc
       61 cgaagatcgc cgtctggcta tttaggtcca aactccagcc cgccgactgg cagcgaggaa
      121 ttgagaggaa catggctcgg ccgtacgttt gcctgctggc cctggcggct gtgctactgc
      181 taggtatcgc cgccgtctcc agatcgaagg gcctgcgggg caagggccag gggcatcaga
      241 gggcgccgcg aatcccttct cagttcagcc aagaggagcg cgtcgcaatg aaggaggctc
      301 tgaaaggtgc catccagatt ccaacagtgt ctttcagccc cgaggagctc aacacgacag
      361 ccctggctga gtttggagaa tacattcata aagtctttcc tactgttttc aaaaccagct
      421 ttatccggca tgaagctgtg ggagagtaca gccacctgtt cactgtccaa ggctcggacc
      481 ccagcctgca gccctacatg ctcctcgctc acattgatgt ggtgcctgcc cctgacgaag
      541 gctgggacgt gcccccattt tctgggttgg agagtgatgg cttcatctat ggtcgaggca
      601 cactggacaa caagaactct cttatggcaa tcctgcaggc cttggagctt ctgctgatca
      661 gaaactacat cccccgaaga tctttcttca ttgctctggg ccatgacgag gaggtatcag
      721 gggtaaatgg ggctcagaag atctcagccc tcctacaggc aaggggcatc cagctagcct
      781 tcattgtgga tgaggggagc tccatcttgg atggtttcat tcccaacctc cagaagccct
      841 ttgccatggt ttcagtctcc gagaagggtg caattgacct catgctgcaa gtaaacatga
      901 ctccaggcca ttcttcagct cctccaaagg aaacaagcat tggcatcctc gcagctgctg
      961 tcagccgact ggagcagaca ccaatgccga acatgtttgg aggcgggcca ttcaagatgg
     1021 cattgcagca gctggcaaac gagttccctt tcccgaccaa catagtcctg agcaacctgt
     1081 ggctatttca gccccttgta agcaggttga tggagaggaa ttacataacc aatgcgctgg
     1141 tcaggaccac cacagcactc accatgttca atgcaggggt caaggtgaat gtcatccccc
     1201 ctgtggccca ggccaccgtc aacttccgaa ttcaccctgc acagacagtc caggagctcc
     1261 taaaactagc caaggacatt gtggctgatg accggatcca gttccacgtg ttgaatgcct
     1321 ttgaccccct gcctgtcagc ccctctgatg atcaggcctt gggctaccag ctgctccgcc
     1381 agaccataca gtctgtcttc ccggaagtca acattgttgc cccaggtact tgtattggca
     1441 acacagacag cagacactat acgaacctta ccactggcat ctaccggttc aaccccatct
     1501 acctgcagcc tcagagcttc agcagcatcc acggaatcaa tgagaaaatc tcagtccaag
     1561 cctacgagac ccaggtgaaa ttcatcttcg agttcatcca gaacgctgac gcagacccaa
     1621 ggccagttcc tcacctgcac gaactgtgag gttggggagc cacagctgga tcagggatgg
     1681 ctgatgctag gccaggacta acccaagggg gaagccagtg ttgatgaaac tttgggtcaa
     1741 agtcacatca taatgacctc acccacctgc cttgctcact cctaaactca ctcaacactc
     1801 aagaacaagg ccagggagaa ggggaaggcc agcaggagcc ccgcttctcc cttcctcccg
     1861 gcaactccat cgctcagccg accggcattt actgccttct tgtcactact ttagaaggtc
     1921 tctggcctgt ctgtctcacc ctggtgattt aactgctcct tgttaagtcc tgactgaaca
     1981 aatgcagatt tgaaaaatat caaccagatt tgaccttcta caagtgttta atttagggca
     2041 cgcttgttgg gctgcctttt ccagggctta tatgtttctt cttgctgtaa tttcctttcc
     2101 tcccccagcc cccgccccat cttcttggat tgtttagccg gctcttcatc tctcctctcc
     2161 tgcccctgca tccctcccct tatcctccct tttattctac ccctggagga agacttagtc
     2221 aaactatgat actcccataa ttgccacaac aattggtcaa ataaaatgtt ctatgccaca
     2281 tcagctgggg ggtaaaacgg aggcaggggg ctttggagga accccagacc tcctggttct
     2341 ggaggctgga gcctggagaa gaaagcctct gtcctcgggc tcctcccaag ggctccctgg
     2401 gctttgctcc ctcccctgcc ctgttcctgc cacctgctgc tgctgtccca ccccaggagg
     2461 cactaatctg tggaaacatt tcccttgcac atcccacggg ctgagctccc aagagaaggg
     2521 cagcctctct ctggagccca ggaccagcag gacattggca tcatgtccta attcagactt
     2581 atcaaagaga agtggaggac atggggtggg gggactgcct ggaggggctc tgctctggct
     2641 ggtggggcag gcggaggggc gagctgccct ccgttagggg actgcagagc tcctgtcttt
     2701 tttctctgga atctaagcct gagcatattg gaatctgctc agtagctgtc aggtggggag
     2761 cattgaaagg cagcatttct tggctcaagg ctgggagctg tgctttgtgg atcacaaggg
     2821 agtcaaggtc atggagggag acacagaggg agctgagacc tgagagactc cctctttttt
     2881 tcctctccag acaaggactt tccattgcct tcctggggtt tgatggcagt gggctccttt
     2941 tccctcctca caatgcccgg cccctcctgc ctgcctgtgg atgtgagctg ttcttaggag
     3001 ctggggccta atggaaagcg ttagaaacac agtgcaggaa ttatttgagg ttttctgcta
     3061 ctccccctaa gattcacatt ccttccctcg ccctcccttt tctggccaat tcagtactca
     3121 ttcagccttt gttagagggt gagctgaaga acaaaaagga ttcttcacat ttgggcagag
     3181 ctgtacaaag tgctttcaca acaccttatc tcatcggagc cacataagaa cccccgtgaa
     3241 gaaggcatca tttttcttac agaggaggag ttggttctca gagaagttac gcatcaagct
     3301 ggaggcagtt tcaaacccat gtcacctggc cccaagctca ttgttattcc atgatcctat
     3361 gtgactggtg aaatctactt cccattgatt atcttattta atactgacaa tcactccaaa
     3421 ggggttactg cccctgtttt taacagatga ggcaactgag gctcagaggt taagtagttt
     3481 gtcatgcagg tgttaggggc agagtctgtc tgcatccaaa gcctgtgcta acagtactga
     3541 agaggaaact gaggctcgga gaagtcattt gcccagatta cacagttctt aaggggcagc
     3601 cttagaattc aaatgcagct caaaaatccc caagtccagt gctttttcgg tcacaccaca
     3661 ctgcctgccc caagaacctg tggtgtctgg ctcattcatt ctgacccagg gagatctcaa
     3721 gggcaaaggc tgttctactg ctggatttgg ttcttagctc aagctctctg ttcccctggc
     3781 tgacctctcc ctagtcacat ctctccgtcc gtctgccagc attccttaca cacccacccc
     3841 ctgcttctgg gttcagctct tcccccttct tgagtttggg gacagccagg tctctaatga
     3901 tctgtgggat aactgggaga agagtgagca gggaaccctg tccctgtccg gtctcaccac
     3961 tctcttcaag catcagaaac aatagtgttc tgagcccccg gagtgggaag gaaagccttg
     4021 agagggagct gctccaaatc ctggctctga gaacacagaa attccagccc tgtgtcccct
     4081 gaagttttct ggaaagagca gctgaaagtg ctggccagaa caacgtgagc cctaagattc
     4141 tgggcaggat gggccaatga atctgggact ttcctccacc cctaccttta tccacctgcc
     4201 actccccaag tccaccttga aagagcttca gcagataatc acaagtacac cgcacacccc
     4261 catcaaggac ttagctctag cttctcactc atacctccct aaggttggaa ggaa
//
LOCUS       XM_032603417            1520 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tetratricopeptide repeat domain 4 (TTC4),
            transcript variant X1, mRNA.
ACCESSION   XM_032603417
VERSION     XM_032603417.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1520
                     /gene="TTC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739206"
     CDS             48..1391
                     /gene="TTC4"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 4 isoform X1"
                     /protein_id="XP_032459308.1"
                     /db_xref="GeneID:116739206"
                     /translation="MERQEQDAGSDDAMDSFLEKFQSQPYRGGFHEDQWEEEFEKIPL
                     FMKKAPSEIDPQENPDLACLQSIIFDEERSPEEQARTFKDEGNDYFKEKDYKKAVISY
                     TEGLKKKCADPDLNAVLYSNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIVRGALC
                     HLELKNYVEAVNWCDEGLQIDATEKKLLEMRAKADKLKRTEQRDIRKAKLKEKKEQNQ
                     NEALLQAIMARNIRLVSEAAGEDEDSASEGLGELILNGLTSENLYGARLSVDDGGRLS
                     WPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGETPSWDLEQKYCPDNLEVYFEDGD
                     RSELYRVPPNSTLLQVLQHPRYFVKALTPAFLVCVGSSAFCRNYLRGRKVRQLFASSS
                     LEDFMCPYLALPTPSPSEECTSLLLMQRDVSGHVQTELTEHHVVGFCSFPSAVGT"
     misc_feature    <237..728
                     /gene="TTC4"
                     /note="Lipoprotein NlpI, contains TPR repeats [Cell
                     wall/membrane/envelope biogenesis]; Region: NlpI; COG4785"
                     /db_xref="CDD:443815"
     misc_feature    282..368
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    order(285..287,294..299,306..311,315..317,399..401,
                     408..413,420..425,429..434,501..503,510..515,522..527,
                     534..536)
                     /gene="TTC4"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    393..485
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    498..584
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    705..1187
                     /gene="TTC4"
                     /note="C-terminal wheel domain found in Saccharomyces
                     cerevisiae Hsp70/Hsp90 co-chaperone Cns1 and similar
                     proteins; Region: CTWD_Cns1; cd21380"
                     /db_xref="CDD:439174"
ORIGIN      
        1 agtgattctc agcatctgga ccgtggcagg agagctaggg agctgacatg gagcggcagg
       61 agcaggacgc gggctctgac gacgccatgg actcgttcct ggaaaagttc cagagccagc
      121 cttatcgcgg cgggttccac gaggaccagt gggaggagga atttgaaaag atccccttat
      181 ttatgaagaa agcgccatca gaaattgatc cccaggagaa tcctgacttg gcttgcctcc
      241 agtcaattat ttttgatgaa gagcgatctc cagaagaaca ggccaggacc tttaaagacg
      301 agggcaatga ttactttaaa gaaaaagact ataagaaagc tgtgatttcg tacactgaag
      361 gattaaagaa gaaatgtgca gaccctgatt tgaatgctgt tctttactcc aaccgggcag
      421 cagcacagta ctatctgggc aattttcgtt ctgctctcaa tgatgtgaca gctgccagaa
      481 agctaaaacc ctgccacctg aaagccatag taagaggtgc cttatgccat ctggaactga
      541 aaaactatgt cgaggctgtg aactggtgcg atgaggggct gcagatagat gccacagaga
      601 agaagcttct ggaaatgagg gctaaagcag acaagttgaa gcgaactgaa cagagggata
      661 taaggaaagc aaagttgaaa gaaaagaagg agcagaatca gaatgaggct ttactccagg
      721 ccatcatggc taggaacatc aggctagtgt ctgaagctgc tggagaggat gaagattcag
      781 cctcagaagg tctcggtgag ctcatcctga acgggctcac ttctgagaac ctctacggag
      841 ccaggctgag tgtagatgat gggggaagac tgagctggcc tgtgctcttt ctgtacccag
      901 agtatgccca gtcagacttc atctctgctt ttcacgagga ctccagattt attgatcatc
      961 taatggtgat gtttggtgaa acgccctctt gggatttaga gcaaaaatac tgccctgata
     1021 atttagaggt ctactttgag gatggcgaca ggtcagaact gtaccgggtg cctcccaaca
     1081 gcaccctgct gcaggtgctg cagcacccca ggtactttgt aaaagccctg acaccagcat
     1141 ttttggtctg tgtaggatcc tctgcttttt gcaggaatta tctccggggg agaaaggtgc
     1201 gccagctttt cgcttcctcc tccctagagg attttatgtg cccttacctt gcgttgccca
     1261 ccccgtcccc cagcgaagag tgtacttccc tgctcctgat gcaaagggat gtgagtggac
     1321 atgtccagac cgagcttaca gagcatcacg tggtaggctt ttgctctttt ccctctgctg
     1381 tgggaacata gttcccagag aggggctgtt cctttagcct gggtgtcaga tgctaagaca
     1441 catggagcag agctgaagca gctggcctgc agccattgac tgtaacatga atgagaaata
     1501 aatgtttgtt gtagtaataa
//
LOCUS       XM_032603428            2310 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tetratricopeptide repeat domain 4 (TTC4),
            transcript variant X2, mRNA.
ACCESSION   XM_032603428
VERSION     XM_032603428.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2310
                     /gene="TTC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 11 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739206"
     CDS             64..1230
                     /gene="TTC4"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 4 isoform X2"
                     /protein_id="XP_032459319.1"
                     /db_xref="GeneID:116739206"
                     /translation="MERQEQDAGSDDAMDSFLEKFQSQPYRGGFHEDQWEEEFEKIPL
                     FMKKAPSEIDPQENPDLACLQSIIFDEERSPEEQARTFKDEGNDYFKEKDYKKAVISY
                     TEGLKKKCADPDLNAVLYSNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIVRGALC
                     HLELKNYVEAVNWCDEGLQIDATEKKLLEMRAKADKLKRTEQRDIRKAKLKEKKEQNQ
                     NEALLQAIMARNIRLVSEAAGEDEDSASEGLGELILNGLTSENLYGARLSVDDGGRLS
                     WPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGETPSWDLEQKYCPDNLEVYFEDGD
                     RSELYRVPPNSTLLQVLQHPRYFVKALTPAFLVCVGSSAFCRNYLRGRKVRQVK"
     misc_feature    <253..744
                     /gene="TTC4"
                     /note="Lipoprotein NlpI, contains TPR repeats [Cell
                     wall/membrane/envelope biogenesis]; Region: NlpI; COG4785"
                     /db_xref="CDD:443815"
     misc_feature    298..384
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    order(301..303,310..315,322..327,331..333,415..417,
                     424..429,436..441,445..450,517..519,526..531,538..543,
                     550..552)
                     /gene="TTC4"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    409..501
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    514..600
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    721..1203
                     /gene="TTC4"
                     /note="C-terminal wheel domain found in Saccharomyces
                     cerevisiae Hsp70/Hsp90 co-chaperone Cns1 and similar
                     proteins; Region: CTWD_Cns1; cd21380"
                     /db_xref="CDD:439174"
ORIGIN      
        1 ccgccggaag ttgtcgagtg attctcagca tctggaccgt ggcaggagag ctagggagct
       61 gacatggagc ggcaggagca ggacgcgggc tctgacgacg ccatggactc gttcctggaa
      121 aagttccaga gccagcctta tcgcggcggg ttccacgagg accagtggga ggaggaattt
      181 gaaaagatcc ccttatttat gaagaaagcg ccatcagaaa ttgatcccca ggagaatcct
      241 gacttggctt gcctccagtc aattattttt gatgaagagc gatctccaga agaacaggcc
      301 aggaccttta aagacgaggg caatgattac tttaaagaaa aagactataa gaaagctgtg
      361 atttcgtaca ctgaaggatt aaagaagaaa tgtgcagacc ctgatttgaa tgctgttctt
      421 tactccaacc gggcagcagc acagtactat ctgggcaatt ttcgttctgc tctcaatgat
      481 gtgacagctg ccagaaagct aaaaccctgc cacctgaaag ccatagtaag aggtgcctta
      541 tgccatctgg aactgaaaaa ctatgtcgag gctgtgaact ggtgcgatga ggggctgcag
      601 atagatgcca cagagaagaa gcttctggaa atgagggcta aagcagacaa gttgaagcga
      661 actgaacaga gggatataag gaaagcaaag ttgaaagaaa agaaggagca gaatcagaat
      721 gaggctttac tccaggccat catggctagg aacatcaggc tagtgtctga agctgctgga
      781 gaggatgaag attcagcctc agaaggtctc ggtgagctca tcctgaacgg gctcacttct
      841 gagaacctct acggagccag gctgagtgta gatgatgggg gaagactgag ctggcctgtg
      901 ctctttctgt acccagagta tgcccagtca gacttcatct ctgcttttca cgaggactcc
      961 agatttattg atcatctaat ggtgatgttt ggtgaaacgc cctcttggga tttagagcaa
     1021 aaatactgcc ctgataattt agaggtctac tttgaggatg gcgacaggtc agaactgtac
     1081 cgggtgcctc ccaacagcac cctgctgcag gtgctgcagc accccaggta ctttgtaaaa
     1141 gccctgacac cagcattttt ggtctgtgta ggatcctctg ctttttgcag gaattatctc
     1201 cgggggagaa aggtgcgcca ggtaaagtga ctgggccatg ctgtgagagc caggccccct
     1261 ggacctcctc ctccctcctg ctcctcagcc tggggtctag cacacttgaa tcagcaggac
     1321 ctactcctag aatccagcgg tttatttctg tcactctggg gacaggcatt ccctgcattg
     1381 tggttgggaa ggagctgccg acttcctgaa ctgcagcctc tctggtcaga gtactgagct
     1441 ccagctggtc ttcactcatc tctcttggta caaaactccg tgccttggtc atgacatcct
     1501 tggactcact gtgagctgtg ttacccacca gcctccatct ctgacctgag gaactcactg
     1561 gtctgtggac gctgactcac aatccagtga cgtggttctg aacctttgtg gagtcaggcc
     1621 ttagagaagc tgtggctcac actgcagaca tacacaaacc atgcgtgtaa ttgtaaggta
     1681 tcggagctga gagactcggg cctcccgtga cttcacgagc acagacggct gctctgtgga
     1741 gacgctgtag atcccttggg gtgagatggg gccaggaaag ccaggtcctg tttctgtatc
     1801 tataaagacc tacaaactgg ggtcctccag aaccactaaa atgtttgtca cttttcctga
     1861 tcttggcagt atggagaact gtgacatact tggacagtat gtcacagttt ttacatttca
     1921 gaattttatg ccttttaaac tgggaaatct ttttgtatgt tgagtcactg tcatacgttg
     1981 tatttttgtc tgcagctttt cgcttcctcc tccctagagg attttatgtg cccttacctt
     2041 gcgttgccca ccccgtcccc cagcgaagag tgtacttccc tgctcctgat gcaaagggat
     2101 gtgagtggac atgtccagac cgagcttaca gagcatcacg tggtaggctt ttgctctttt
     2161 ccctctgctg tgggaacata gttcccagag aggggctgtt cctttagcct gggtgtcaga
     2221 tgctaagaca catggagcag agctgaagca gctggcctgc agccattgac tgtaacatga
     2281 atgagaaata aatgtttgtt gtagtaataa
//
LOCUS       XM_032603437            1126 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tetratricopeptide repeat domain 4 (TTC4),
            transcript variant X3, mRNA.
ACCESSION   XM_032603437
VERSION     XM_032603437.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1126
                     /gene="TTC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116739206"
     CDS             41..997
                     /gene="TTC4"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 4 isoform X3"
                     /protein_id="XP_032459328.1"
                     /db_xref="GeneID:116739206"
                     /translation="MERQEQDAGSDDAMDSFLEKFQSQPYRGGFHEDQWEEEFEKIPL
                     FMKKAPSEIDPQENPDLACLQSIIFDEERSPEEQARTFKDEGNDYFKEKDYKKAVISY
                     TEGLKKKCADPDLNAVLYSNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIVRGALC
                     HLELKNYVEAVNWCDEGLQIDATEKKLLEMRAKADKLKVYFEDGDRSELYRVPPNSTL
                     LQVLQHPRYFVKALTPAFLVCVGSSAFCRNYLRGRKVRQLFASSSLEDFMCPYLALPT
                     PSPSEECTSLLLMQRDVSGHVQTELTEHHVVGFCSFPSAVGT"
     misc_feature    <230..>583
                     /gene="TTC4"
                     /note="Lipoprotein NlpI, contains TPR repeats [Cell
                     wall/membrane/envelope biogenesis]; Region: NlpI; COG4785"
                     /db_xref="CDD:443815"
     misc_feature    275..361
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    order(278..280,287..292,299..304,308..310,392..394,
                     401..406,413..418,422..427,494..496,503..508,515..520,
                     527..529)
                     /gene="TTC4"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    386..478
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    491..577
                     /gene="TTC4"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    <617..793
                     /gene="TTC4"
                     /note="C-terminal wheel domain found in Saccharomyces
                     cerevisiae Hsp70/Hsp90 co-chaperone Cns1, Homo sapiens
                     tetratricopeptide repeat protein 4 (TTC4), and similar
                     proteins; Region: CTWD_Cns1-like; cl40972"
                     /db_xref="CDD:454930"
ORIGIN      
        1 ctcagcatct ggaccgtggc aggagagcta gggagctgac atggagcggc aggagcagga
       61 cgcgggctct gacgacgcca tggactcgtt cctggaaaag ttccagagcc agccttatcg
      121 cggcgggttc cacgaggacc agtgggagga ggaatttgaa aagatcccct tatttatgaa
      181 gaaagcgcca tcagaaattg atccccagga gaatcctgac ttggcttgcc tccagtcaat
      241 tatttttgat gaagagcgat ctccagaaga acaggccagg acctttaaag acgagggcaa
      301 tgattacttt aaagaaaaag actataagaa agctgtgatt tcgtacactg aaggattaaa
      361 gaagaaatgt gcagaccctg atttgaatgc tgttctttac tccaaccggg cagcagcaca
      421 gtactatctg ggcaattttc gttctgctct caatgatgtg acagctgcca gaaagctaaa
      481 accctgccac ctgaaagcca tagtaagagg tgccttatgc catctggaac tgaaaaacta
      541 tgtcgaggct gtgaactggt gcgatgaggg gctgcagata gatgccacag agaagaagct
      601 tctggaaatg agggctaaag cagacaagtt gaaggtctac tttgaggatg gcgacaggtc
      661 agaactgtac cgggtgcctc ccaacagcac cctgctgcag gtgctgcagc accccaggta
      721 ctttgtaaaa gccctgacac cagcattttt ggtctgtgta ggatcctctg ctttttgcag
      781 gaattatctc cgggggagaa aggtgcgcca gcttttcgct tcctcctccc tagaggattt
      841 tatgtgccct taccttgcgt tgcccacccc gtcccccagc gaagagtgta cttccctgct
      901 cctgatgcaa agggatgtga gtggacatgt ccagaccgag cttacagagc atcacgtggt
      961 aggcttttgc tcttttccct ctgctgtggg aacatagttc ccagagaggg gctgttcctt
     1021 tagcctgggt gtcagatgct aagacacatg gagcagagct gaagcagctg gcctgcagcc
     1081 attgactgta acatgaatga gaaataaatg tttgttgtag taataa
//
LOCUS       XR_004345490             466 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739218
            (LOC116739218), transcript variant X1, ncRNA.
ACCESSION   XR_004345490
VERSION     XR_004345490.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..466
                     /gene="LOC116739218"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739218"
     ncRNA           1..466
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739218"
                     /product="uncharacterized LOC116739218, transcript variant
                     X1"
                     /db_xref="GeneID:116739218"
ORIGIN      
        1 gtggattcgg aacgctgcag ctgcgagcgc ttggttcccg gggcagcctt ctggagggat
       61 ttaccaaata ataatacagg cccagttaca gatgaatttc agatggtatt tccagtctga
      121 attcccacca gcagtgcatg agagttctga attccctaca ttctttctac acttacggtc
      181 cactctaaca aaggccaaca cttacctgaa agaaattgat gtcccttcct aaaattcata
      241 ttctttcctc tctgaaagga agcaaactgg cagaaaatag gtaatttcat ttaaattaaa
      301 tgactggaaa ttatatagaa gagtctggac aaaatgaaag gacgattttt aaagacaaca
      361 aattataata aaaggattcg gggcttccct ggtggagcag tggttaagaa tcctcctgcc
      421 aatgcaagtg acatgggttt gagccctggt ccaggaagat cccacg
//
LOCUS       XR_004345491             584 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739218
            (LOC116739218), transcript variant X2, ncRNA.
ACCESSION   XR_004345491
VERSION     XR_004345491.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..584
                     /gene="LOC116739218"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739218"
     ncRNA           1..584
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739218"
                     /product="uncharacterized LOC116739218, transcript variant
                     X2"
                     /db_xref="GeneID:116739218"
ORIGIN      
        1 catcgccgag tggattcgga acgctgcagc tgcgagcgct tggttcccgg ggcagccttc
       61 tggaggggtg agcggagctg gctctgctgg ccaacagggc acggcgcccg ggatgcgcat
      121 tgagttcctc tcgcgggctg ctgggagtcg aggatctctc ccgactgcgg cctcagattt
      181 accaaataat aatacaggcc cagttacaga tgaatttcag atggtatttc cagtctgaat
      241 tcccaccagc agtgcatgag agttctgaat tccctacatt ctttctacac ttacggtcca
      301 ctctaacaaa ggccaacact tacctgaaag aaattgatgt cccttcctaa aattcatatt
      361 ctttcctctc tgaaaggaag caaactggca gaaaataggt aatttcattt aaattaaatg
      421 actggaaatt atatagaaga gtctggacaa aatgaaagga cgatttttaa agacaacaaa
      481 ttataataaa aggattcggg gcttccctgg tggagcagtg gttaagaatc ctcctgccaa
      541 tgcaagtgac atgggtttga gccctggtcc aggaagatcc cacg
//
LOCUS       XM_032603452            2298 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus outer dense fiber of sperm tails 2 like
            (ODF2L), transcript variant X1, mRNA.
ACCESSION   XM_032603452
VERSION     XM_032603452.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2298
                     /gene="ODF2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739227"
     CDS             254..2185
                     /gene="ODF2L"
                     /codon_start=1
                     /product="protein BCAP isoform X1"
                     /protein_id="XP_032459343.1"
                     /db_xref="GeneID:116739227"
                     /translation="MEKPINDGSHSEELFSHFKSIPEKEHLPRHASESHLSCLKQDIL
                     FEKTKLEATFKEAELATCSVELLLPLFKDTIEEISFENTDLSASNLKISKQKEILRKE
                     LDSFKHLKQTLEHLLRKTEHQQRGDSLSNLLEKLADKESENTTLKTKVLEKETCIQEL
                     SCLFQNEKANALKASRLSQSVKVVHERLQFQIHKKEAENDKLKEHIKSLETKISEWNL
                     QLKKSTHEAVTMKESSRQKAIALKKASKIYKQRIKHFTGDVENLTSQIREQEAKLSET
                     VSASNVWKSHYEKIVIEKAELEVQIETMKKQIINLLEDLKKMEDHGKNSCEEILRKLH
                     SIEYENETLNLENTKLKATLAALKDEIASVENELLELQEVEKQQKTLIEVYKTQIQKL
                     QEAAEMVESRCESLLQENNLITKNKNKKLKKVRAQMESHLKELEHDRDSLTAAEQRLH
                     ECQESLQHHKGKCADQAHAIRELQGQVDENHDLLTKLSLEEENYLIQLKCENLKQKLE
                     QMDAENKELEKKLANQEGCLKHTNLEFKEKSAEYRALARQLEAAVEEGRQKVSEEIEK
                     MSSRERALQIKILDLETELRKKNEEQNQLICKMNSKAQHQEVCLKEIQHSLEKSENQN
                     ESIKNYLQFLKTSYVTMFG"
     misc_feature    392..2053
                     /gene="ODF2L"
                     /note="helix-rich Mycoplasma protein; Region:
                     Mplasa_alph_rch; TIGR04523"
                     /db_xref="CDD:275316"
     misc_feature    <620..>1432
                     /gene="ODF2L"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 tgccagagaa gccatttgct ggttaccaac tccgctttgt cccgcttgca ccttgttggg
       61 cgttctgcca ccgcgagccg ttctaggagg tcgcctgctt cccgcgtcga gtccttacct
      121 tcctagctct cacccgctgc actgcccccc gcgtcccgct ccgttctagc cgacccaggg
      181 ctggagaaca cagatttcag cttatgtgga gaacttgttg cggaagccac ctataaatcc
      241 atttaccgaa tttatggaga agcctataaa tgatggaagt cattcagaag aactcttttc
      301 ccattttaaa agtataccag agaaagaaca tttaccacgg catgccagtg aaagtcatct
      361 cagctgccta aagcaggaca tcctatttga gaagaccaaa ttggaagcaa catttaagga
      421 agccgagtta gcaacttgtt ctgtagaatt acttttgcca ttatttaagg acaccattga
      481 agagattagt tttgaaaata ctgatctttc tgcatccaat ttgaagattt ctaaacagaa
      541 ggaaatatta agaaaagaat tagactcttt taaacattta aaacaaactt tggaacatct
      601 tcttagaaag acagaacacc aacagagagg ggacagttta tccaacttgt tagagaagct
      661 agctgataaa gaaagtgaaa acactactct taagacgaag gtacttgaaa aggagacctg
      721 tatccaagaa ctttcttgtt tgtttcagaa tgaaaaggca aatgctttga aagcaagccg
      781 tttgtcacaa tcagtaaaag tagtacatga acgactacag ttccaaattc ataaaaagga
      841 agcagagaat gataaattaa aagaacacat aaagagctta gaaaccaaaa tatcagaatg
      901 gaacttgcaa ttgaaaaaga gtacgcatga ggctgtaacg atgaaagaat caagtaggca
      961 aaaagctata gctctaaaaa aggcatctaa aatttacaaa caaaggatta aacattttac
     1021 tggagatgtg gaaaacctta cttcccaaat tagagagcag gaagccaagt tgtctgaaac
     1081 agtttcagct tccaacgtct ggaaaagtca ttatgagaaa attgtaatag aaaaagctga
     1141 attggaagtt cagatcgaaa caatgaaaaa gcaaattatt aatcttttgg aagacctgaa
     1201 gaaaatggaa gaccatggaa aaaattcatg cgaagaaatt cttagaaaac ttcactcaat
     1261 tgaatatgaa aatgaaactc tgaatcttga gaatacaaaa ttaaaggcta cactagctgc
     1321 tttgaaggac gagattgcct ctgttgaaaa tgagctctta gaattgcaag aagtagaaaa
     1381 acaacagaaa acccttattg aagtttataa aactcagata cagaagttgc aagaagcagc
     1441 tgaaatggtg gaaagcagat gtgaaagttt gctacaagag aataacctaa taacaaaaaa
     1501 caaaaataaa aaattaaaga aggtgagagc ccagatggag tctcatctga aggagttaga
     1561 gcacgaccgc gattccttga cagcagcaga acagaggctt cacgagtgtc aggagagcct
     1621 gcagcaccac aaggggaaat gtgcagacca agcacacgcc attagggagc ttcagggcca
     1681 ggttgatgaa aatcatgatc ttctgacaaa gctttctctg gaagaggaaa attatcttat
     1741 tcagttgaaa tgtgaaaacc ttaaacaaaa attagaacag atggatgcag aaaataaaga
     1801 gcttgaaaag aagctggcaa accaagaagg atgtcttaag cataccaatc ttgagtttaa
     1861 agagaaatct gcagaataca gagcattggc cagacagctg gaagctgctg tagaagaagg
     1921 aagacaaaag gtttctgaag aaatagagaa aatgtcatct agagaaaggg ctttacaaat
     1981 taaaatatta gatctggaaa ctgagcttag aaagaaaaat gaagaacaaa atcaacttat
     2041 ttgcaaaatg aacagtaaag cacaacatca ggaagtatgt ttgaaagaaa tacagcatag
     2101 tcttgaaaag tcggagaatc aaaatgagag tattaagaat tatttacagt ttcttaaaac
     2161 ttcttatgta acaatgtttg gataaattgt tggatttatt ttctataagc aataggtttt
     2221 tactatgagt ctaaaaagta attagataaa aattaaatat actatcttgc tatattttat
     2281 gatttatggg tggtacta
//
LOCUS       XM_032603462            2445 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus outer dense fiber of sperm tails 2 like
            (ODF2L), transcript variant X2, mRNA.
ACCESSION   XM_032603462
VERSION     XM_032603462.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2445
                     /gene="ODF2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739227"
     CDS             254..2125
                     /gene="ODF2L"
                     /codon_start=1
                     /product="protein BCAP isoform X2"
                     /protein_id="XP_032459353.1"
                     /db_xref="GeneID:116739227"
                     /translation="MEKPINDGSHSEELFSHFKSIPEKEHLPRHASESHLSCLKQDIL
                     FEKTKLEATFKEAELATCSVELLLPLFKDTIEEISFENTDLSASNLKISKQKEILRKE
                     LDSFKHLKQTLEHLLRKTEHQQRGDSLSNLLEKLADKESENTTLKTKVLEKETCIQEL
                     SCLFQNEKANALKASRLSQSVKVVHERLQFQIHKKEAENDKLKEHIKSLETKISEWNL
                     QLKKSTHEAVTMKESSRQKAIALKKASKIYKQRIKHFTGDVENLTSQIREQEAKLSET
                     VSASNVWKSHYEKIVIEKAELEVQIETMKKQIINLLEDLKKMEDHGKNSCEEILRKLH
                     SIEYENETLNLENTKLKATLAALKDEIASVENELLELQEVEKQQKTLIEVYKTQIQKL
                     QEAAEMVESRCESLLQENNLITKNKNKKLKKVRAQMESHLKELEHDRDSLTAAEQRLH
                     ECQESLQHHKGKCADQAHAIRELQGQVDENHDLLTKLSLEEENYLIQLKCENLKQKLE
                     QMDAENKELEKKLANQEGCLKHTNLEFKEKSAEYRALARQLEAAVEEGRQKVSEEIEK
                     MSSRERALQIKILDLETELRKKNEEQNQLICKMNSQPSPVSVVLAIFLSESKSRVHT"
     misc_feature    392..2053
                     /gene="ODF2L"
                     /note="helix-rich Mycoplasma protein; Region:
                     Mplasa_alph_rch; TIGR04523"
                     /db_xref="CDD:275316"
ORIGIN      
        1 tgccagagaa gccatttgct ggttaccaac tccgctttgt cccgcttgca ccttgttggg
       61 cgttctgcca ccgcgagccg ttctaggagg tcgcctgctt cccgcgtcga gtccttacct
      121 tcctagctct cacccgctgc actgcccccc gcgtcccgct ccgttctagc cgacccaggg
      181 ctggagaaca cagatttcag cttatgtgga gaacttgttg cggaagccac ctataaatcc
      241 atttaccgaa tttatggaga agcctataaa tgatggaagt cattcagaag aactcttttc
      301 ccattttaaa agtataccag agaaagaaca tttaccacgg catgccagtg aaagtcatct
      361 cagctgccta aagcaggaca tcctatttga gaagaccaaa ttggaagcaa catttaagga
      421 agccgagtta gcaacttgtt ctgtagaatt acttttgcca ttatttaagg acaccattga
      481 agagattagt tttgaaaata ctgatctttc tgcatccaat ttgaagattt ctaaacagaa
      541 ggaaatatta agaaaagaat tagactcttt taaacattta aaacaaactt tggaacatct
      601 tcttagaaag acagaacacc aacagagagg ggacagttta tccaacttgt tagagaagct
      661 agctgataaa gaaagtgaaa acactactct taagacgaag gtacttgaaa aggagacctg
      721 tatccaagaa ctttcttgtt tgtttcagaa tgaaaaggca aatgctttga aagcaagccg
      781 tttgtcacaa tcagtaaaag tagtacatga acgactacag ttccaaattc ataaaaagga
      841 agcagagaat gataaattaa aagaacacat aaagagctta gaaaccaaaa tatcagaatg
      901 gaacttgcaa ttgaaaaaga gtacgcatga ggctgtaacg atgaaagaat caagtaggca
      961 aaaagctata gctctaaaaa aggcatctaa aatttacaaa caaaggatta aacattttac
     1021 tggagatgtg gaaaacctta cttcccaaat tagagagcag gaagccaagt tgtctgaaac
     1081 agtttcagct tccaacgtct ggaaaagtca ttatgagaaa attgtaatag aaaaagctga
     1141 attggaagtt cagatcgaaa caatgaaaaa gcaaattatt aatcttttgg aagacctgaa
     1201 gaaaatggaa gaccatggaa aaaattcatg cgaagaaatt cttagaaaac ttcactcaat
     1261 tgaatatgaa aatgaaactc tgaatcttga gaatacaaaa ttaaaggcta cactagctgc
     1321 tttgaaggac gagattgcct ctgttgaaaa tgagctctta gaattgcaag aagtagaaaa
     1381 acaacagaaa acccttattg aagtttataa aactcagata cagaagttgc aagaagcagc
     1441 tgaaatggtg gaaagcagat gtgaaagttt gctacaagag aataacctaa taacaaaaaa
     1501 caaaaataaa aaattaaaga aggtgagagc ccagatggag tctcatctga aggagttaga
     1561 gcacgaccgc gattccttga cagcagcaga acagaggctt cacgagtgtc aggagagcct
     1621 gcagcaccac aaggggaaat gtgcagacca agcacacgcc attagggagc ttcagggcca
     1681 ggttgatgaa aatcatgatc ttctgacaaa gctttctctg gaagaggaaa attatcttat
     1741 tcagttgaaa tgtgaaaacc ttaaacaaaa attagaacag atggatgcag aaaataaaga
     1801 gcttgaaaag aagctggcaa accaagaagg atgtcttaag cataccaatc ttgagtttaa
     1861 agagaaatct gcagaataca gagcattggc cagacagctg gaagctgctg tagaagaagg
     1921 aagacaaaag gtttctgaag aaatagagaa aatgtcatct agagaaaggg ctttacaaat
     1981 taaaatatta gatctggaaa ctgagcttag aaagaaaaat gaagaacaaa atcaacttat
     2041 ttgcaaaatg aacagtcaac catctcctgt ttctgttgtg ttggccatct ttctttccga
     2101 gagcaagagc cgggtccaca cctagcctgg aaaccctgag tctcgtaata aaagcatgct
     2161 aatgagactt caaaattact atgaagaaga tgaggaaaat gctctttcct tttgttaaca
     2221 gatttgcggt ggccagtctc caagatggcc cacaatgatc cccgcctcct tcacaccctt
     2281 gtgcagtccc ctcccacagt ctgccagagt cgctgctaca gctctgtgac acggtaaaaa
     2341 ttacaaattt aacaataact ttaagatcat ttatatttac tttctatgaa tgtcacattt
     2401 ttctttttac atatgacatg ttttctggtc aattatatat ccttt
//
LOCUS       XM_032603470            2172 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus outer dense fiber of sperm tails 2 like
            (ODF2L), transcript variant X3, mRNA.
ACCESSION   XM_032603470
VERSION     XM_032603470.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2172
                     /gene="ODF2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739227"
     CDS             254..2059
                     /gene="ODF2L"
                     /codon_start=1
                     /product="protein BCAP isoform X3"
                     /protein_id="XP_032459361.1"
                     /db_xref="GeneID:116739227"
                     /translation="MEKPINDGSHSEELFSHFKSIPEKEHLPRHASESHLSCLKQDIL
                     FEKTKLEATFKEAELATCSVELLLPLFKDTIEEISFENTDLSASNLKISKQKEILRKE
                     LDSFKHLKQTLEHLLRKTEHQQRGDSLSNLLEKLADKESENTTLKTKVLEKETCIQEL
                     SCLFQNEKANALKASRLSQSVKVVHERLQFQIHKKEAENDKLKEHIKSLETKISEWNL
                     QLKKSTHEAVTMKESSRQKAIALKKASKIYKQRIKHFTGDVENLTSQIREQEAKLSET
                     VSASNVWKSHYEKIVIEKAELEVQIETMKKQIINLLEDLKKMEDHGKNSCEEILRKLH
                     SIEYENETLNLENTKLKATLAALKDEIASVENELLELQEVEKQQKTLIEVYKTQIQKL
                     QEAAEMVESRCESLLQENNLITKNKNKKLKKVRAQMESHLKELEHDRDSLTAAEQRLH
                     ECQESLQHHKGKCADQAHAIRELQGQVDENHDLLTKLSLEEENYLIQLKCENLKQKLE
                     QMDAENKELEKKLANQEGCLKHTNLEFKEKSAEYRALARQLEAAVEEGRQKKAQHQEV
                     CLKEIQHSLEKSENQNESIKNYLQFLKTSYVTMFG"
     misc_feature    392..2014
                     /gene="ODF2L"
                     /note="helix-rich Mycoplasma protein; Region:
                     Mplasa_alph_rch; TIGR04523"
                     /db_xref="CDD:275316"
ORIGIN      
        1 tgccagagaa gccatttgct ggttaccaac tccgctttgt cccgcttgca ccttgttggg
       61 cgttctgcca ccgcgagccg ttctaggagg tcgcctgctt cccgcgtcga gtccttacct
      121 tcctagctct cacccgctgc actgcccccc gcgtcccgct ccgttctagc cgacccaggg
      181 ctggagaaca cagatttcag cttatgtgga gaacttgttg cggaagccac ctataaatcc
      241 atttaccgaa tttatggaga agcctataaa tgatggaagt cattcagaag aactcttttc
      301 ccattttaaa agtataccag agaaagaaca tttaccacgg catgccagtg aaagtcatct
      361 cagctgccta aagcaggaca tcctatttga gaagaccaaa ttggaagcaa catttaagga
      421 agccgagtta gcaacttgtt ctgtagaatt acttttgcca ttatttaagg acaccattga
      481 agagattagt tttgaaaata ctgatctttc tgcatccaat ttgaagattt ctaaacagaa
      541 ggaaatatta agaaaagaat tagactcttt taaacattta aaacaaactt tggaacatct
      601 tcttagaaag acagaacacc aacagagagg ggacagttta tccaacttgt tagagaagct
      661 agctgataaa gaaagtgaaa acactactct taagacgaag gtacttgaaa aggagacctg
      721 tatccaagaa ctttcttgtt tgtttcagaa tgaaaaggca aatgctttga aagcaagccg
      781 tttgtcacaa tcagtaaaag tagtacatga acgactacag ttccaaattc ataaaaagga
      841 agcagagaat gataaattaa aagaacacat aaagagctta gaaaccaaaa tatcagaatg
      901 gaacttgcaa ttgaaaaaga gtacgcatga ggctgtaacg atgaaagaat caagtaggca
      961 aaaagctata gctctaaaaa aggcatctaa aatttacaaa caaaggatta aacattttac
     1021 tggagatgtg gaaaacctta cttcccaaat tagagagcag gaagccaagt tgtctgaaac
     1081 agtttcagct tccaacgtct ggaaaagtca ttatgagaaa attgtaatag aaaaagctga
     1141 attggaagtt cagatcgaaa caatgaaaaa gcaaattatt aatcttttgg aagacctgaa
     1201 gaaaatggaa gaccatggaa aaaattcatg cgaagaaatt cttagaaaac ttcactcaat
     1261 tgaatatgaa aatgaaactc tgaatcttga gaatacaaaa ttaaaggcta cactagctgc
     1321 tttgaaggac gagattgcct ctgttgaaaa tgagctctta gaattgcaag aagtagaaaa
     1381 acaacagaaa acccttattg aagtttataa aactcagata cagaagttgc aagaagcagc
     1441 tgaaatggtg gaaagcagat gtgaaagttt gctacaagag aataacctaa taacaaaaaa
     1501 caaaaataaa aaattaaaga aggtgagagc ccagatggag tctcatctga aggagttaga
     1561 gcacgaccgc gattccttga cagcagcaga acagaggctt cacgagtgtc aggagagcct
     1621 gcagcaccac aaggggaaat gtgcagacca agcacacgcc attagggagc ttcagggcca
     1681 ggttgatgaa aatcatgatc ttctgacaaa gctttctctg gaagaggaaa attatcttat
     1741 tcagttgaaa tgtgaaaacc ttaaacaaaa attagaacag atggatgcag aaaataaaga
     1801 gcttgaaaag aagctggcaa accaagaagg atgtcttaag cataccaatc ttgagtttaa
     1861 agagaaatct gcagaataca gagcattggc cagacagctg gaagctgctg tagaagaagg
     1921 aagacaaaag aaagcacaac atcaggaagt atgtttgaaa gaaatacagc atagtcttga
     1981 aaagtcggag aatcaaaatg agagtattaa gaattattta cagtttctta aaacttctta
     2041 tgtaacaatg tttggataaa ttgttggatt tattttctat aagcaatagg tttttactat
     2101 gagtctaaaa agtaattaga taaaaattaa atatactatc ttgctatatt ttatgattta
     2161 tgggtggtac ta
//
LOCUS       XM_032603478            2139 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus outer dense fiber of sperm tails 2 like
            (ODF2L), transcript variant X4, mRNA.
ACCESSION   XM_032603478
VERSION     XM_032603478.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2139
                     /gene="ODF2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739227"
     CDS             254..2026
                     /gene="ODF2L"
                     /codon_start=1
                     /product="protein BCAP isoform X4"
                     /protein_id="XP_032459369.1"
                     /db_xref="GeneID:116739227"
                     /translation="MEKPINDGSHSEELFSHFKSIPEKEHLPRHASESHLSCLKQDIL
                     FEKTKLEATFKEAELATCSVELLLPLFKDTIEEISFENTDLSASNLKISKQKEILRKE
                     LDSFKHLKQTLEHLLRKTEHQQRGDSLSNLLEKLADKESENTTLKTKVLEKETCIQEL
                     SCLFQNEKANALKASRLSQSVKVVHERLQFQIHKKEAENDKLKEHIKSLETKISEWNL
                     QLKKSTHEAVTMKESSRQKAIALKKASKIYKQRIKHFTGDVENLTSQIREQEAKLSET
                     VSASNVWKSHYEKIVIEKAELEVQIETMKKQIINLLEDLKKMEDHGKNSCEEILRKLH
                     SIEYENETLNLENTKLKATLAALKDEIASVENELLELQEVEKQQKTLIEVYKTQIQKL
                     QEAAEMVESRCESLLQENNLITKNKNKKLKKVDENHDLLTKLSLEEENYLIQLKCENL
                     KQKLEQMDAENKELEKKLANQEGCLKHTNLEFKEKSAEYRALARQLEAAVEEGRQKVS
                     EEIEKMSSRERALQIKILDLETELRKKNEEQNQLICKMNSKAQHQEVCLKEIQHSLEK
                     SENQNESIKNYLQFLKTSYVTMFG"
     misc_feature    <620..>1432
                     /gene="ODF2L"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <1259..>1978
                     /gene="ODF2L"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 tgccagagaa gccatttgct ggttaccaac tccgctttgt cccgcttgca ccttgttggg
       61 cgttctgcca ccgcgagccg ttctaggagg tcgcctgctt cccgcgtcga gtccttacct
      121 tcctagctct cacccgctgc actgcccccc gcgtcccgct ccgttctagc cgacccaggg
      181 ctggagaaca cagatttcag cttatgtgga gaacttgttg cggaagccac ctataaatcc
      241 atttaccgaa tttatggaga agcctataaa tgatggaagt cattcagaag aactcttttc
      301 ccattttaaa agtataccag agaaagaaca tttaccacgg catgccagtg aaagtcatct
      361 cagctgccta aagcaggaca tcctatttga gaagaccaaa ttggaagcaa catttaagga
      421 agccgagtta gcaacttgtt ctgtagaatt acttttgcca ttatttaagg acaccattga
      481 agagattagt tttgaaaata ctgatctttc tgcatccaat ttgaagattt ctaaacagaa
      541 ggaaatatta agaaaagaat tagactcttt taaacattta aaacaaactt tggaacatct
      601 tcttagaaag acagaacacc aacagagagg ggacagttta tccaacttgt tagagaagct
      661 agctgataaa gaaagtgaaa acactactct taagacgaag gtacttgaaa aggagacctg
      721 tatccaagaa ctttcttgtt tgtttcagaa tgaaaaggca aatgctttga aagcaagccg
      781 tttgtcacaa tcagtaaaag tagtacatga acgactacag ttccaaattc ataaaaagga
      841 agcagagaat gataaattaa aagaacacat aaagagctta gaaaccaaaa tatcagaatg
      901 gaacttgcaa ttgaaaaaga gtacgcatga ggctgtaacg atgaaagaat caagtaggca
      961 aaaagctata gctctaaaaa aggcatctaa aatttacaaa caaaggatta aacattttac
     1021 tggagatgtg gaaaacctta cttcccaaat tagagagcag gaagccaagt tgtctgaaac
     1081 agtttcagct tccaacgtct ggaaaagtca ttatgagaaa attgtaatag aaaaagctga
     1141 attggaagtt cagatcgaaa caatgaaaaa gcaaattatt aatcttttgg aagacctgaa
     1201 gaaaatggaa gaccatggaa aaaattcatg cgaagaaatt cttagaaaac ttcactcaat
     1261 tgaatatgaa aatgaaactc tgaatcttga gaatacaaaa ttaaaggcta cactagctgc
     1321 tttgaaggac gagattgcct ctgttgaaaa tgagctctta gaattgcaag aagtagaaaa
     1381 acaacagaaa acccttattg aagtttataa aactcagata cagaagttgc aagaagcagc
     1441 tgaaatggtg gaaagcagat gtgaaagttt gctacaagag aataacctaa taacaaaaaa
     1501 caaaaataaa aaattaaaga aggttgatga aaatcatgat cttctgacaa agctttctct
     1561 ggaagaggaa aattatctta ttcagttgaa atgtgaaaac cttaaacaaa aattagaaca
     1621 gatggatgca gaaaataaag agcttgaaaa gaagctggca aaccaagaag gatgtcttaa
     1681 gcataccaat cttgagttta aagagaaatc tgcagaatac agagcattgg ccagacagct
     1741 ggaagctgct gtagaagaag gaagacaaaa ggtttctgaa gaaatagaga aaatgtcatc
     1801 tagagaaagg gctttacaaa ttaaaatatt agatctggaa actgagctta gaaagaaaaa
     1861 tgaagaacaa aatcaactta tttgcaaaat gaacagtaaa gcacaacatc aggaagtatg
     1921 tttgaaagaa atacagcata gtcttgaaaa gtcggagaat caaaatgaga gtattaagaa
     1981 ttatttacag tttcttaaaa cttcttatgt aacaatgttt ggataaattg ttggatttat
     2041 tttctataag caataggttt ttactatgag tctaaaaagt aattagataa aaattaaata
     2101 tactatcttg ctatatttta tgatttatgg gtggtacta
//
LOCUS       XM_032603487            2264 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus outer dense fiber of sperm tails 2 like
            (ODF2L), transcript variant X5, mRNA.
ACCESSION   XM_032603487
VERSION     XM_032603487.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2264
                     /gene="ODF2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739227"
     CDS             254..1981
                     /gene="ODF2L"
                     /codon_start=1
                     /product="protein BCAP isoform X5"
                     /protein_id="XP_032459378.1"
                     /db_xref="GeneID:116739227"
                     /translation="MEKPINDGSHSEELFSHFKSIPEKEHLPRHASESHLSCLKQDIL
                     FEKTKLEATFKEAELATCSVELLLPLFKDTIEEISFENTDLSASNLKISKQKEILRKE
                     LDSFKHLKQTLEHLLRKTEHQQRGDSLSNLLEKLADKESENTTLKTKVLEKETCIQEL
                     SCLFQNEKANALKASRLSQSVKVVHERLQFQIHKKEAENDKLKEHIKSLETKISEWNL
                     QLKKSTHEAVTMKESSRQKAIALKKASKIYKQRIKHFTGDVENLTSQIREQEAKLSET
                     VSASNVWKSHYEKIVIEKAELEVQIETMKKQIINLLEDLKKMEDHGKNSCEEILRKLH
                     SIEYENETLNLENTKLKATLAALKDEIASVENELLELQEVEKQQKTLIEVYKTQIQKL
                     QEAAEMVESRCESLLQENNLITKNKNKKLKKVRAQMESHLKELEHDRDSLTAAEQRLH
                     ECQESLQHHKGKCADQAHAIRELQGQVDENHDLLTKLSLEEENYLIQLKCENLKQKLE
                     QMDAENKELEKKLANQEGCLKHTNLEFKEKSAEYRALARQLEAAVEEGRQKGSTPSLE
                     TLSLVIKAC"
     misc_feature    <620..>1432
                     /gene="ODF2L"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <959..>1933
                     /gene="ODF2L"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 tgccagagaa gccatttgct ggttaccaac tccgctttgt cccgcttgca ccttgttggg
       61 cgttctgcca ccgcgagccg ttctaggagg tcgcctgctt cccgcgtcga gtccttacct
      121 tcctagctct cacccgctgc actgcccccc gcgtcccgct ccgttctagc cgacccaggg
      181 ctggagaaca cagatttcag cttatgtgga gaacttgttg cggaagccac ctataaatcc
      241 atttaccgaa tttatggaga agcctataaa tgatggaagt cattcagaag aactcttttc
      301 ccattttaaa agtataccag agaaagaaca tttaccacgg catgccagtg aaagtcatct
      361 cagctgccta aagcaggaca tcctatttga gaagaccaaa ttggaagcaa catttaagga
      421 agccgagtta gcaacttgtt ctgtagaatt acttttgcca ttatttaagg acaccattga
      481 agagattagt tttgaaaata ctgatctttc tgcatccaat ttgaagattt ctaaacagaa
      541 ggaaatatta agaaaagaat tagactcttt taaacattta aaacaaactt tggaacatct
      601 tcttagaaag acagaacacc aacagagagg ggacagttta tccaacttgt tagagaagct
      661 agctgataaa gaaagtgaaa acactactct taagacgaag gtacttgaaa aggagacctg
      721 tatccaagaa ctttcttgtt tgtttcagaa tgaaaaggca aatgctttga aagcaagccg
      781 tttgtcacaa tcagtaaaag tagtacatga acgactacag ttccaaattc ataaaaagga
      841 agcagagaat gataaattaa aagaacacat aaagagctta gaaaccaaaa tatcagaatg
      901 gaacttgcaa ttgaaaaaga gtacgcatga ggctgtaacg atgaaagaat caagtaggca
      961 aaaagctata gctctaaaaa aggcatctaa aatttacaaa caaaggatta aacattttac
     1021 tggagatgtg gaaaacctta cttcccaaat tagagagcag gaagccaagt tgtctgaaac
     1081 agtttcagct tccaacgtct ggaaaagtca ttatgagaaa attgtaatag aaaaagctga
     1141 attggaagtt cagatcgaaa caatgaaaaa gcaaattatt aatcttttgg aagacctgaa
     1201 gaaaatggaa gaccatggaa aaaattcatg cgaagaaatt cttagaaaac ttcactcaat
     1261 tgaatatgaa aatgaaactc tgaatcttga gaatacaaaa ttaaaggcta cactagctgc
     1321 tttgaaggac gagattgcct ctgttgaaaa tgagctctta gaattgcaag aagtagaaaa
     1381 acaacagaaa acccttattg aagtttataa aactcagata cagaagttgc aagaagcagc
     1441 tgaaatggtg gaaagcagat gtgaaagttt gctacaagag aataacctaa taacaaaaaa
     1501 caaaaataaa aaattaaaga aggtgagagc ccagatggag tctcatctga aggagttaga
     1561 gcacgaccgc gattccttga cagcagcaga acagaggctt cacgagtgtc aggagagcct
     1621 gcagcaccac aaggggaaat gtgcagacca agcacacgcc attagggagc ttcagggcca
     1681 ggttgatgaa aatcatgatc ttctgacaaa gctttctctg gaagaggaaa attatcttat
     1741 tcagttgaaa tgtgaaaacc ttaaacaaaa attagaacag atggatgcag aaaataaaga
     1801 gcttgaaaag aagctggcaa accaagaagg atgtcttaag cataccaatc ttgagtttaa
     1861 agagaaatct gcagaataca gagcattggc cagacagctg gaagctgctg tagaagaagg
     1921 aagacaaaag gggtccacac ctagcctgga aaccctgagt ctcgtaataa aagcatgcta
     1981 atgagacttc aaaattacta tgaagaagat gaggaaaatg ctctttcctt ttgttaacag
     2041 atttgcggtg gccagtctcc aagatggccc acaatgatcc ccgcctcctt cacacccttg
     2101 tgcagtcccc tcccacagtc tgccagagtc gctgctacag ctctgtgaca cggtaaaaat
     2161 tacaaattta acaataactt taagatcatt tatatttact ttctatgaat gtcacatttt
     2221 tctttttaca tatgacatgt tttctggtca attatatatc cttt
//
LOCUS       XM_032603501            3138 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 220 (RNF220),
            transcript variant X1, mRNA.
ACCESSION   XM_032603501
VERSION     XM_032603501.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3138
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3138
                     /gene="RNF220"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 3
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739248"
     CDS             405..2183
                     /gene="RNF220"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF220 isoform X1"
                     /protein_id="XP_032459392.1"
                     /db_xref="GeneID:116739248"
                     /translation="MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQ
                     PRPFGVPVSVDKDVHIPFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPP
                     NLDCTPISMLNHSGVGAFRPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADG
                     KEYDFGTQLPSSSPGSLKVDDTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFD
                     SQAPICPICQVLLRPSELQEHMEQELEQLAQLPASKNSLLKDAMAPGTPKSLLLSASI
                     KREGESPTASPHSSATDDLHHSDRYQTFLRVRANRQTRLNARIGKMKRRKQDEGQVCP
                     LCSRPLAGSEQEMSRHVEHCLSKREGSCMAEDDAVDIEHENSNRFEEYEWCGQKRIRA
                     TTLLEGGFRGSGFVMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGEEPGE
                     AKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDIEK
                     ITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWL
                     RTLGAKKLCPQCNTITAPGDLRRIYL"
     misc_feature    1053..1814
                     /gene="RNF220"
                     /note="E3 ubiquitin-protein ligase RNF220; Region: RNF220;
                     pfam15926"
                     /db_xref="CDD:464946"
     misc_feature    2016..2171
                     /gene="RNF220"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 220 (RNF220) and similar proteins; Region:
                     RING-HC_RNF220; cd16563"
                     /db_xref="CDD:438225"
ORIGIN      
        1 attcactgat tagagccagc gctgagaggc agcactgctc cttctcttac accaaccgag
       61 tctcttgatc tgtacatgca atcccaggca gctcgcgaac acaaacccgg ggccagccgc
      121 ctactgctgc tactgctgct gctgctactg ctgctgctgc tgccgctgcc gccgccgccg
      181 ccgccgctgc ctccgccggc tctgcgcacc cgggactttt catgcaccac actcaccgcc
      241 tccttccctc cgtgtcctga aaagtgcgac ctttctccca aggaatttcc acggtcttag
      301 aaggggatga ttccccagta atattccctg ccctgatccc aggtgccact ccctcccagg
      361 gaagactgct tcttgtgtga cgtcggccat agaaagagac tccgatggac ttacaccggg
      421 cagccttcaa gatggagaac tcatcctacc tccccaaccc actggcatcc ccagcactga
      481 tggtcctggc gtccacggct gaggctagcc gtgatgcttc catcccttgt cagcagccac
      541 gacccttcgg tgtacctgtc tcggtagaca aggacgtgca tattccattc accaatggct
      601 cctacacctt tgcctctatg taccatcggc aaggtggggt gccgggcact tttgccaatc
      661 gtgattttcc cccttcttta ctacacctcc accctcagtt cgccccccca aatctagatt
      721 gcaccccaat cagtatgctg aatcatagtg gagtgggggc cttccgtccc tttgcttcca
      781 ctgaggaccg ggagagttat cagtcagcct ttacgccggc caagcgactt aaaaactgcc
      841 atgacacaga gtctccccac ttgcgcttct cagatgcaga tggcaaggaa tatgactttg
      901 ggacacagct gccatctagc tcccccggtt cacttaaggt tgacgacact gggaagaaga
      961 tttttgccgt ctctggcctc atttcggatc gggaagcctc atctagccca gaggatcgga
     1021 atgacagatg taagaaaaag gcagcagcac tgtttgacag ccaggctcct atttgcccca
     1081 tctgccaggt cctgctgagg cccagcgagc tgcaggagca tatggaacaa gagctggaac
     1141 agctggcgca gctgcctgcc agcaagaatt cccttctgaa ggatgccatg gctccaggca
     1201 cccccaagtc cctcttgttg tctgcttcca tcaagaggga aggagagtct ccgacagcat
     1261 caccacactc gtctgccacc gacgacctgc accactcaga cagataccag accttcttgc
     1321 gagtgcgagc caaccggcag acccgactga atgctcggat tgggaaaatg aaacggagga
     1381 agcaagatga agggcaggta tgtcccctgt gcagccgccc cctggcagga tcggagcagg
     1441 agatgagtag gcatgtggag cattgccttt ctaagaggga aggctcctgc atggctgagg
     1501 atgatgccgt ggacatcgag catgagaaca gcaaccgctt tgaggagtat gagtggtgcg
     1561 ggcagaagcg gatacgggcc accactctcc tggaaggtgg tttccgaggc tctggcttcg
     1621 tcatgtgcag cggcaaggag aatccggaca gtgatgctga cttggatgtg gatggggatg
     1681 acactctgga gtatgggaaa ccacaataca cggaggccga cgtcatcccc tgcacaggcg
     1741 aggagcccgg tgaagccaag gagagagagg cactccgggg cgcagtccta aatggtggcc
     1801 ctcccagcac acgcatcaca cctgagttct ctaaatgggc cagtgacgag atgccatcta
     1861 ccagcaacgg tgagagcagc aagcaggagg ccatgcagaa gacctgcaag aacagtgaca
     1921 tcgagaaaat caccgaagat tcagctgtga ccacgtttga ggccctgaag gctcgggtca
     1981 gggaactgga gcggcagcta tcccgtgggg accgttacaa atgcctcatc tgcatggact
     2041 catactcgat gcccctaacg tccatccagt gttggcatgt gcactgtgaa gagtgctggc
     2101 tgcggaccct gggtgccaag aagctctgcc ctcagtgcaa caccatcaca gcgcccggag
     2161 acctgcggag aatctacttg tgagctggcc accccaggca ggccttgcct cgagcgtccc
     2221 acctgccccg cctgtgacgt gacccccccc ccttgtacat acttacacac aggtttcccg
     2281 tgtacatatg tgcacacaca aacgcacaca cacatgcaca cacacaggac tcgagccaga
     2341 gtggaggctg aggcccaggc cctgcctgct ggctcccacc aagattgggg accatacctg
     2401 ttccaggttc cgttcccagg atggggcagg gaggtggggg tagggggagt agccaggcaa
     2461 ggctcctgag atccagcacc cccccccccc cgccgactga cagatggaca gacagacatg
     2521 caaacaccag actgaagcac atgtaatata gaccgtgtat gtttacaatg ttgtgtataa
     2581 atgggacaac tcctcaccct ctatcccgtc ccctgccctt tggttgtatg attttcttct
     2641 tttgttaaga acacctagaa gcagtgcctc gttcagggct ggctgggggc tcggcccatc
     2701 cacctcttgg ggtgcctgcc tctccctccc cactccctct cccgtggttc tcttccctct
     2761 cccatgtgct cggtgttcag tggtgtatat ttcttctccc agatgtgggg cacgtgcccc
     2821 aagggacatg atcctctcct tagtcttagc tcctggggct cctcataagg agttggggga
     2881 ggggggaggc acaggaaatg ggaaccgagc tgaagcaggg gctgagactg gggctggatg
     2941 agggtgctcc tggctaccca gccttctgca gagaaccttt cctgggatta gactgctgtt
     3001 cccagggaaa agtgtttgtc tcccctgccc ttcttgtggg ccccatggtg tgatgctgtg
     3061 tctgtatatt ctatacaaag gtacttgtcc tttccctttg taaactacat ttgacatgga
     3121 ttaaaccaat ataaacag
//
LOCUS       XM_032603511            3144 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 220 (RNF220),
            transcript variant X2, mRNA.
ACCESSION   XM_032603511
VERSION     XM_032603511.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3144
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3144
                     /gene="RNF220"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 7
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739248"
     CDS             488..2188
                     /gene="RNF220"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF220 isoform X2"
                     /protein_id="XP_032459402.1"
                     /db_xref="GeneID:116739248"
                     /translation="MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQ
                     PRPFGVPVSVDKDVHIPFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPP
                     NLDCTPISMLNHSGVGAFRPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADG
                     KEYDFGTQLPSSSPGSLKVDDTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFD
                     SQAPICPICQVLLRPSELQEHMEQELEQLAQLPASKNSLLKDAMAPGTPKSLLLSASI
                     KREGESPTASPHSSATDDLHHSDRYQTFLRVRANRQTRLNARIGKMKRRKQDEGQREG
                     SCMAEDDAVDIEHENSNRFEEYEWCGQKRIRATTLLEGGFRGSGFVMCSGKENPDSDA
                     DLDVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFS
                     KWASDEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSR
                     GDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
                     "
     misc_feature    1136..1819
                     /gene="RNF220"
                     /note="E3 ubiquitin-protein ligase RNF220; Region: RNF220;
                     pfam15926"
                     /db_xref="CDD:464946"
     misc_feature    2021..2176
                     /gene="RNF220"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 220 (RNF220) and similar proteins; Region:
                     RING-HC_RNF220; cd16563"
                     /db_xref="CDD:438225"
ORIGIN      
        1 agtgcctgta tgtgtgtgag tgtgaatgtg cgtgtgtgtg tgcgcgcgtg tgtgtctccg
       61 agtccctggg agagtggagg ctcattcact gattagagcc agcgctgaga ggcagcactg
      121 ctccttctct tacaccaacc gagtctcttg atctgtacat gcaatcccag gcagctcgcg
      181 aacacaaacc cggggccagc cgcctactgc tgctactgct gctgctgcta ctgctgctgc
      241 tgctgccgct gccgccgccg ccgccgccgc tgcctccgcc ggctctgcgc acccgggact
      301 tttcatgcac cacactcacc gcctccttcc ctccgtgtcc tgaaaagtgc gacctttctc
      361 ccaaggaatt tccacggtct tagaagggga tgattcccca gtaatattcc ctgccctgat
      421 cccaggtgcc actccctccc agggaagact gcttcttgtg tgacgtcggc catagaaaga
      481 gactccgatg gacttacacc gggcagcctt caagatggag aactcatcct acctccccaa
      541 cccactggca tccccagcac tgatggtcct ggcgtccacg gctgaggcta gccgtgatgc
      601 ttccatccct tgtcagcagc cacgaccctt cggtgtacct gtctcggtag acaaggacgt
      661 gcatattcca ttcaccaatg gctcctacac ctttgcctct atgtaccatc ggcaaggtgg
      721 ggtgccgggc acttttgcca atcgtgattt tcccccttct ttactacacc tccaccctca
      781 gttcgccccc ccaaatctag attgcacccc aatcagtatg ctgaatcata gtggagtggg
      841 ggccttccgt ccctttgctt ccactgagga ccgggagagt tatcagtcag cctttacgcc
      901 ggccaagcga cttaaaaact gccatgacac agagtctccc cacttgcgct tctcagatgc
      961 agatggcaag gaatatgact ttgggacaca gctgccatct agctcccccg gttcacttaa
     1021 ggttgacgac actgggaaga agatttttgc cgtctctggc ctcatttcgg atcgggaagc
     1081 ctcatctagc ccagaggatc ggaatgacag atgtaagaaa aaggcagcag cactgtttga
     1141 cagccaggct cctatttgcc ccatctgcca ggtcctgctg aggcccagcg agctgcagga
     1201 gcatatggaa caagagctgg aacagctggc gcagctgcct gccagcaaga attcccttct
     1261 gaaggatgcc atggctccag gcacccccaa gtccctcttg ttgtctgctt ccatcaagag
     1321 ggaaggagag tctccgacag catcaccaca ctcgtctgcc accgacgacc tgcaccactc
     1381 agacagatac cagaccttct tgcgagtgcg agccaaccgg cagacccgac tgaatgctcg
     1441 gattgggaaa atgaaacgga ggaagcaaga tgaagggcag agggaaggct cctgcatggc
     1501 tgaggatgat gccgtggaca tcgagcatga gaacagcaac cgctttgagg agtatgagtg
     1561 gtgcgggcag aagcggatac gggccaccac tctcctggaa ggtggtttcc gaggctctgg
     1621 cttcgtcatg tgcagcggca aggagaatcc ggacagtgat gctgacttgg atgtggatgg
     1681 ggatgacact ctggagtatg ggaaaccaca atacacggag gccgacgtca tcccctgcac
     1741 aggcgaggag cccggtgaag ccaaggagag agaggcactc cggggcgcag tcctaaatgg
     1801 tggccctccc agcacacgca tcacacctga gttctctaaa tgggccagtg acgagatgcc
     1861 atctaccagc aacggtgaga gcagcaagca ggaggccatg cagaagacct gcaagaacag
     1921 tgacatcgag aaaatcaccg aagattcagc tgtgaccacg tttgaggccc tgaaggctcg
     1981 ggtcagggaa ctggagcggc agctatcccg tggggaccgt tacaaatgcc tcatctgcat
     2041 ggactcatac tcgatgcccc taacgtccat ccagtgttgg catgtgcact gtgaagagtg
     2101 ctggctgcgg accctgggtg ccaagaagct ctgccctcag tgcaacacca tcacagcgcc
     2161 cggagacctg cggagaatct acttgtgagc tggccacccc aggcaggcct tgcctcgagc
     2221 gtcccacctg ccccgcctgt gacgtgaccc cccccccttg tacatactta cacacaggtt
     2281 tcccgtgtac atatgtgcac acacaaacgc acacacacat gcacacacac aggactcgag
     2341 ccagagtgga ggctgaggcc caggccctgc ctgctggctc ccaccaagat tggggaccat
     2401 acctgttcca ggttccgttc ccaggatggg gcagggaggt gggggtaggg ggagtagcca
     2461 ggcaaggctc ctgagatcca gcaccccccc ccccccgccg actgacagat ggacagacag
     2521 acatgcaaac accagactga agcacatgta atatagaccg tgtatgttta caatgttgtg
     2581 tataaatggg acaactcctc accctctatc ccgtcccctg ccctttggtt gtatgatttt
     2641 cttcttttgt taagaacacc tagaagcagt gcctcgttca gggctggctg ggggctcggc
     2701 ccatccacct cttggggtgc ctgcctctcc ctccccactc cctctcccgt ggttctcttc
     2761 cctctcccat gtgctcggtg ttcagtggtg tatatttctt ctcccagatg tggggcacgt
     2821 gccccaaggg acatgatcct ctccttagtc ttagctcctg gggctcctca taaggagttg
     2881 ggggaggggg gaggcacagg aaatgggaac cgagctgaag caggggctga gactggggct
     2941 ggatgagggt gctcctggct acccagcctt ctgcagagaa cctttcctgg gattagactg
     3001 ctgttcccag ggaaaagtgt ttgtctcccc tgcccttctt gtgggcccca tggtgtgatg
     3061 ctgtgtctgt atattctata caaaggtact tgtcctttcc ctttgtaaac tacatttgac
     3121 atggattaaa ccaatataaa cagc
//
LOCUS       XR_004345500            2810 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 220 (RNF220),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004345500
VERSION     XR_004345500.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2810
                     /gene="RNF220"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739248"
     misc_RNA        1..2810
                     /gene="RNF220"
                     /product="ring finger protein 220, transcript variant X3"
                     /db_xref="GeneID:116739248"
ORIGIN      
        1 ctgatcccag gtgccactcc ctcccaggga agactgcttc ttgtgtgacg tcggccatag
       61 aaagagactc cgatggactt acaccgggca gccttcaaga tggagaactc atcctacctc
      121 cccaacccac tggcatcccc agcactgatg gtcctggcgt ccacggctga ggctagccgt
      181 gatgcttcca tcccttgtca gcagccacga cccttcggtg tacctgtctc ggtagacaag
      241 gacgtgcata ttccattcac caatggctcc tacacctttg cctctatgta ccatcggcaa
      301 ggtggggtgc cgggcacttt tgccaatcgt gattttcccc cttctttact acacctccac
      361 cctcagttcg cccccccaaa tctagattgc accccaatca gtatgctgaa tcatagtgga
      421 gtgggggcct tccgtccctt tgcttccact gaggaccggg agagttatca gtcagccttt
      481 acgccggcca agcgacttaa aaactgccat gacacagagt ctccccactt gcgcttctca
      541 gatgcagatg gcaaggaata tgactttggg acacagctgc catctagctc ccccggttca
      601 cttaaggttg acgacactgg gaagaagatt tttgccgtct ctggcctcat ttcggatcgg
      661 gaagcctcat ctagcccaga ggatcggaat gacagatgta agaaaaaggc agcagcactg
      721 tttgacagcc aggctcctat ttgccccatc tgccaggtcc tgctgaggcc cagcgagctg
      781 caggagcata tggaacaaga gctggaacag ctggcgcagc tgcctgccag caagaattcc
      841 cttctgaagg atgccatggc tccaggcacc cccaagtccc tcttgttgtc tgcttccatc
      901 aagagggaag gagagtctcc gacagcatca ccacactcgt ctgccaccga cgacctgcac
      961 cactcagaca gataccagac cttcttgcga gtgcgagcca accggcagac ccgactgaat
     1021 gctcggattg ggaaaatgaa acggaggaag caagatgaag ggcaggtatg tcccctgtgc
     1081 agccgccccc tggcaggatc ggagcaggag atgagtaggc atgtggagca ttgcctttct
     1141 aagagggaag gctcctgcat ggctgaggat gatgccgtgg acatcgagca tgagaacagc
     1201 aaccgctttg aggagtatga gtggtgcggg cagaagcgga tacgggccac cactctcctg
     1261 gaaggtggtt tccgaggctc tggcttcgtc atgtgcagcg gcaaggagaa tccggacagt
     1321 gatgctgact tggatgtgga tggggatgac actctggagt atgggaaacc acaatacacg
     1381 gaggccgacg tcatcccctg cacaggcgag gagcccggtg aagccaagga gagagaggca
     1441 ctccggggcg cagtcctaaa gcaatggtgg ccctcccagc acacgcatca cacctgagtt
     1501 ctctaaatgg gccagtgacg agatgccatc taccagcaac ggtgagagca gcaagcagga
     1561 ggccatgcag aagacctgca agaacagtga catcgagaaa atcaccgaag attcagctgt
     1621 gaccacgttt gaggccctga aggctcgggt cagggaactg gagcggcagc tatcccgtgg
     1681 ggaccgttac aaatgcctca tctgcatgga ctcatactcg atgcccctaa cgtccatcca
     1741 gtgttggcat gtgcactgtg aagagtgctg gctgcggacc ctgggtgcca agaagctctg
     1801 ccctcagtgc aacaccatca cagcgcccgg agacctgcgg agaatctact tgtgagctgg
     1861 ccaccccagg caggccttgc ctcgagcgtc ccacctgccc cgcctgtgac gtgacccccc
     1921 ccccttgtac atacttacac acaggtttcc cgtgtacata tgtgcacaca caaacgcaca
     1981 cacacatgca cacacacagg actcgagcca gagtggaggc tgaggcccag gccctgcctg
     2041 ctggctccca ccaagattgg ggaccatacc tgttccaggt tccgttccca ggatggggca
     2101 gggaggtggg ggtaggggga gtagccaggc aaggctcctg agatccagca cccccccccc
     2161 cccgccgact gacagatgga cagacagaca tgcaaacacc agactgaagc acatgtaata
     2221 tagaccgtgt atgtttacaa tgttgtgtat aaatgggaca actcctcacc ctctatcccg
     2281 tcccctgccc tttggttgta tgattttctt cttttgttaa gaacacctag aagcagtgcc
     2341 tcgttcaggg ctggctgggg gctcggccca tccacctctt ggggtgcctg cctctccctc
     2401 cccactccct ctcccgtggt tctcttccct ctcccatgtg ctcggtgttc agtggtgtat
     2461 atttcttctc ccagatgtgg ggcacgtgcc ccaagggaca tgatcctctc cttagtctta
     2521 gctcctgggg ctcctcataa ggagttgggg gaggggggag gcacaggaaa tgggaaccga
     2581 gctgaagcag gggctgagac tggggctgga tgagggtgct cctggctacc cagccttctg
     2641 cagagaacct ttcctgggat tagactgctg ttcccaggga aaagtgtttg tctcccctgc
     2701 ccttcttgtg ggccccatgg tgtgatgctg tgtctgtata ttctatacaa aggtacttgt
     2761 cctttccctt tgtaaactac atttgacatg gattaaacca atataaacag
//
LOCUS       XM_032603524            2062 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 220 (RNF220),
            transcript variant X4, mRNA.
ACCESSION   XM_032603524
VERSION     XM_032603524.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2062
                     /gene="RNF220"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739248"
     CDS             181..1107
                     /gene="RNF220"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF220 isoform X3"
                     /protein_id="XP_032459415.1"
                     /db_xref="GeneID:116739248"
                     /translation="MPKARSGRRSRGAGGREETFLRVRANRQTRLNARIGKMKRRKQD
                     EGQVCPLCSRPLAGSEQEMSRHVEHCLSKREGSCMAEDDAVDIEHENSNRFEEYEWCG
                     QKRIRATTLLEGGFRGSGFVMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCT
                     GEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCK
                     NSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVH
                     CEECWLRTLGAKKLCPQCNTITAPGDLRRIYL"
     misc_feature    <232..738
                     /gene="RNF220"
                     /note="E3 ubiquitin-protein ligase RNF220; Region: RNF220;
                     pfam15926"
                     /db_xref="CDD:464946"
     misc_feature    940..1095
                     /gene="RNF220"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 220 (RNF220) and similar proteins; Region:
                     RING-HC_RNF220; cd16563"
                     /db_xref="CDD:438225"
ORIGIN      
        1 acatggccgc cgccgccgtt gggagctgag gtgccgccgc cgccgggcag ccggggggaa
       61 tccgcccgca tcgccgccct cgccggccgg gcggccgcgg ggcccggagc gccggaggcc
      121 ggggctgggg cggcactgcg cggcggccac ggggtcccgc tagagcagcc tccggcggct
      181 atgccgaagg cccggagcgg ccggcggagc aggggggccg gcgggaggga ggaaaccttc
      241 ttgcgagtgc gagccaaccg gcagacccga ctgaatgctc ggattgggaa aatgaaacgg
      301 aggaagcaag atgaagggca ggtatgtccc ctgtgcagcc gccccctggc aggatcggag
      361 caggagatga gtaggcatgt ggagcattgc ctttctaaga gggaaggctc ctgcatggct
      421 gaggatgatg ccgtggacat cgagcatgag aacagcaacc gctttgagga gtatgagtgg
      481 tgcgggcaga agcggatacg ggccaccact ctcctggaag gtggtttccg aggctctggc
      541 ttcgtcatgt gcagcggcaa ggagaatccg gacagtgatg ctgacttgga tgtggatggg
      601 gatgacactc tggagtatgg gaaaccacaa tacacggagg ccgacgtcat cccctgcaca
      661 ggcgaggagc ccggtgaagc caaggagaga gaggcactcc ggggcgcagt cctaaatggt
      721 ggccctccca gcacacgcat cacacctgag ttctctaaat gggccagtga cgagatgcca
      781 tctaccagca acggtgagag cagcaagcag gaggccatgc agaagacctg caagaacagt
      841 gacatcgaga aaatcaccga agattcagct gtgaccacgt ttgaggccct gaaggctcgg
      901 gtcagggaac tggagcggca gctatcccgt ggggaccgtt acaaatgcct catctgcatg
      961 gactcatact cgatgcccct aacgtccatc cagtgttggc atgtgcactg tgaagagtgc
     1021 tggctgcgga ccctgggtgc caagaagctc tgccctcagt gcaacaccat cacagcgccc
     1081 ggagacctgc ggagaatcta cttgtgagct ggccacccca ggcaggcctt gcctcgagcg
     1141 tcccacctgc cccgcctgtg acgtgacccc ccccccttgt acatacttac acacaggttt
     1201 cccgtgtaca tatgtgcaca cacaaacgca cacacacatg cacacacaca ggactcgagc
     1261 cagagtggag gctgaggccc aggccctgcc tgctggctcc caccaagatt ggggaccata
     1321 cctgttccag gttccgttcc caggatgggg cagggaggtg ggggtagggg gagtagccag
     1381 gcaaggctcc tgagatccag cacccccccc cccccgccga ctgacagatg gacagacaga
     1441 catgcaaaca ccagactgaa gcacatgtaa tatagaccgt gtatgtttac aatgttgtgt
     1501 ataaatggga caactcctca ccctctatcc cgtcccctgc cctttggttg tatgattttc
     1561 ttcttttgtt aagaacacct agaagcagtg cctcgttcag ggctggctgg gggctcggcc
     1621 catccacctc ttggggtgcc tgcctctccc tccccactcc ctctcccgtg gttctcttcc
     1681 ctctcccatg tgctcggtgt tcagtggtgt atatttcttc tcccagatgt ggggcacgtg
     1741 ccccaaggga catgatcctc tccttagtct tagctcctgg ggctcctcat aaggagttgg
     1801 gggagggggg aggcacagga aatgggaacc gagctgaagc aggggctgag actggggctg
     1861 gatgagggtg ctcctggcta cccagccttc tgcagagaac ctttcctggg attagactgc
     1921 tgttcccagg gaaaagtgtt tgtctcccct gcccttcttg tgggccccat ggtgtgatgc
     1981 tgtgtctgta tattctatac aaaggtactt gtcctttccc tttgtaaact acatttgaca
     2041 tggattaaac caatataaac ag
//
LOCUS       XR_004345505            1876 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 220 (RNF220),
            transcript variant X5, misc_RNA.
ACCESSION   XR_004345505
VERSION     XR_004345505.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1876
                     /gene="RNF220"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739248"
     misc_RNA        1..1876
                     /gene="RNF220"
                     /product="ring finger protein 220, transcript variant X5"
                     /db_xref="GeneID:116739248"
ORIGIN      
        1 ccgctgtttc ctggtcccgg tccggcagcc cccaccactt cttgaacttt cacccccggc
       61 gcgcgacggc ggcgagtcac gtgatcaagg ccaacatggc cgccgccgcc gttgggagct
      121 gagaccttct tgcgagtgcg agccaaccgg cagacccgac tgaatgctcg gattgggaaa
      181 atgaaacgga ggaagcaaga tgaagggcag agggaaggct cctgcatggc tgaggatgat
      241 gccgtggaca tcgagcatga gaacagcaac cgctttgagg agtatgagtg gtgcgggcag
      301 aagcggatac gggccaccac tctcctggaa ggtggtttcc gaggctctgg cttcgtcatg
      361 tgcagcggca aggagaatcc ggacagtgat gctgacttgg atgtggatgg ggatgacact
      421 ctggagtatg ggaaaccaca atacacggag gccgacgtca tcccctgcac aggcgaggag
      481 cccggtgaag ccaaggagag agaggcactc cggggcgcag tcctaaagca atggtggccc
      541 tcccagcaca cgcatcacac ctgagttctc taaatgggcc agtgacgaga tgccatctac
      601 cagcaacggt gagagcagca agcaggaggc catgcagaag acctgcaaga acagtgacat
      661 cgagaaaatc accgaagatt cagctgtgac cacgtttgag gccctgaagg ctcgggtcag
      721 ggaactggag cggcagctat cccgtgggga ccgttacaaa tgcctcatct gcatggactc
      781 atactcgatg cccctaacgt ccatccagtg ttggcatgtg cactgtgaag agtgctggct
      841 gcggaccctg ggtgccaaga agctctgccc tcagtgcaac accatcacag cgcccggaga
      901 cctgcggaga atctacttgt gagctggcca ccccaggcag gccttgcctc gagcgtccca
      961 cctgccccgc ctgtgacgtg accccccccc cttgtacata cttacacaca ggtttcccgt
     1021 gtacatatgt gcacacacaa acgcacacac acatgcacac acacaggact cgagccagag
     1081 tggaggctga ggcccaggcc ctgcctgctg gctcccacca agattgggga ccatacctgt
     1141 tccaggttcc gttcccagga tggggcaggg aggtgggggt agggggagta gccaggcaag
     1201 gctcctgaga tccagcaccc cccccccccc gccgactgac agatggacag acagacatgc
     1261 aaacaccaga ctgaagcaca tgtaatatag accgtgtatg tttacaatgt tgtgtataaa
     1321 tgggacaact cctcaccctc tatcccgtcc cctgcccttt ggttgtatga ttttcttctt
     1381 ttgttaagaa cacctagaag cagtgcctcg ttcagggctg gctgggggct cggcccatcc
     1441 acctcttggg gtgcctgcct ctccctcccc actccctctc ccgtggttct cttccctctc
     1501 ccatgtgctc ggtgttcagt ggtgtatatt tcttctccca gatgtggggc acgtgcccca
     1561 agggacatga tcctctcctt agtcttagct cctggggctc ctcataagga gttgggggag
     1621 gggggaggca caggaaatgg gaaccgagct gaagcagggg ctgagactgg ggctggatga
     1681 gggtgctcct ggctacccag ccttctgcag agaacctttc ctgggattag actgctgttc
     1741 ccagggaaaa gtgtttgtct cccctgccct tcttgtgggc cccatggtgt gatgctgtgt
     1801 ctgtatattc tatacaaagg tacttgtcct ttccctttgt aaactacatt tgacatggat
     1861 taaaccaata taaaca
//
LOCUS       XM_032603539            1953 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 53 (TMEM53),
            transcript variant X1, mRNA.
ACCESSION   XM_032603539
VERSION     XM_032603539.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1953
                     /gene="TMEM53"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739262"
     CDS             212..1048
                     /gene="TMEM53"
                     /codon_start=1
                     /product="transmembrane protein 53 isoform X1"
                     /protein_id="XP_032459430.1"
                     /db_xref="GeneID:116739262"
                     /translation="MASAQLDYTIEIPDQPCRSQENSPNQGGKEAGTRQPLVILLGWG
                     GCTDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEV
                     EKEPLLFHVFSNAGIMLYRYVLELLQTHRRFCHLRVVGTIFDSGPGDSNLLGALRALA
                     AILEPRPAVLRLLLLVAFALVAVLFHVLLAPLTSLFHTHFYDRLLDAASRWPELYLYS
                     RADEVVLARDVERMVEARLAHRVLVHSVDFKSSAHVSHLRDYPTYYTSLCVNFMRSCV
                     RC"
     misc_feature    317..1027
                     /gene="TMEM53"
                     /note="Eukaryotic protein of unknown function (DUF829);
                     Region: DUF829; pfam05705"
                     /db_xref="CDD:461719"
ORIGIN      
        1 ctagggccga gctagcaggg tgctgcgtga ggccccgaga gagactcggt ggttgctaag
       61 gcgggaggtc acagagcgcg gctcagggat tgggtagcgt cgagggaggt gggtggtgat
      121 tgggcggtgc ccaggaggcc ccccggtgag gtgcgggaac gtgagcgaga gttccggccg
      181 gaggcccgag ctgagggccg gcgccttcat catggcctcg gcccagctgg actacaccat
      241 cgagatcccg gatcagccct gccggagcca ggagaacagc cccaaccaag gcgggaagga
      301 ggcggggact cgacagcctt tggtgattct cttgggctgg ggtggctgca cggacaagaa
      361 cctggccaaa tacagcgcca tctaccacaa aaggggctgc atcgtgatcc gatacacagc
      421 cccctggcac atggtcttct tctctgagtc cctgggcatc ccttcacttc gtgtcttggc
      481 ccagaagctg cttgagctgc tctttgatta cgaggttgag aaggagcccc tgctcttcca
      541 cgtcttcagc aacgccggca tcatgctgta ccgatatgta ctggagctcc tgcagaccca
      601 ccggcgcttc tgccacctgc gtgtggtggg caccatcttt gacagtgggc ctggcgacag
      661 caacctgctg ggggctctga gggcgctggc agccatcctg gagccccggc ctgccgtgct
      721 gcgcctgctg ctcctggtgg cctttgccct ggtggcagtc ctgttccacg tcctgctggc
      781 gccactcacc tccctcttcc acacccactt ctatgacagg ctgctcgacg cagcctctcg
      841 ctggccagag ctctacctct actccagggc cgacgaggtg gtcctggcca gggacgtgga
      901 gcgcatggtg gaggcacgcc tggcgcaccg ggtcctggtg cactctgtgg acttcaagtc
      961 atctgcacac gtcagccatc tccgtgacta ccctacttac tacacgagcc tctgtgtcaa
     1021 cttcatgcgc agctgcgtcc ggtgctgagg tccttgccct acccacctca cctctgctcc
     1081 agaaataaat gcctgacacc ttcccataac ctacatccat gggtggggtc ctcttctggt
     1141 tcaactccct gcagccctct gggactttat ggtcctccag gtagagaatt tccatgggcc
     1201 tctgtcctgg ggactgtggt ggtctgctta tcccaggatt cttggggcag gagtgcctgc
     1261 gcaggtctct gcggaagcct agcagtggtt gtgtttggat aagtgcaaca ggctgctgac
     1321 tcctgtggca tttaggctgt gaagggttaa taaagctgcg ggtggggggt aggggtgagg
     1381 atgagcccca gcattgagtt ctgattcctt gaatagaagg tgagctttgc agggaggtgc
     1441 cagagggtag gggcaggctg gggcaggggc tgtgatctgt gctcccaagt cccggaaggg
     1501 cagagcccca cagcatggag tgccgtccct gtggatccca tttagcagtt cactcaggct
     1561 tctcattgcc agggagtcta atgtggaagc cagatgggga gctgagggta cacaggtggg
     1621 gggcctgtcc aggtgtacca cactttgcca ggaagctgct agatccagga aagttgcaag
     1681 atgtgtgtgt aatgggcaga tggagtgggg tgcaggaaga cagcagcgcc agatgggagc
     1741 taggacaagc tgagtcagga gccctaaaga ccagaaccag aaccactggc ctgaaaaaaa
     1801 ctccttcatc tccttgaggg agacgcactt ggatcctctg taggtagaag tggtggcttc
     1861 agccttagag tcctgtatca tctattattc tacaagtcac tgctgcacaa tgctggcaca
     1921 tagctggcat tcaataaatt tttgttgatt taa
//
LOCUS       XM_032603548            1863 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 53 (TMEM53),
            transcript variant X2, mRNA.
ACCESSION   XM_032603548
VERSION     XM_032603548.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1863
                     /gene="TMEM53"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739262"
     CDS             212..958
                     /gene="TMEM53"
                     /codon_start=1
                     /product="transmembrane protein 53 isoform X2"
                     /protein_id="XP_032459439.1"
                     /db_xref="GeneID:116739262"
                     /translation="MASAQLDYTIEIPDQPCRSQENSPNQGGKEAGTRQPLVILLGWG
                     GCTDKNLAKYSAIYHKRKLLELLFDYEVEKEPLLFHVFSNAGIMLYRYVLELLQTHRR
                     FCHLRVVGTIFDSGPGDSNLLGALRALAAILEPRPAVLRLLLLVAFALVAVLFHVLLA
                     PLTSLFHTHFYDRLLDAASRWPELYLYSRADEVVLARDVERMVEARLAHRVLVHSVDF
                     KSSAHVSHLRDYPTYYTSLCVNFMRSCVRC"
     misc_feature    317..937
                     /gene="TMEM53"
                     /note="Eukaryotic protein of unknown function (DUF829);
                     Region: DUF829; pfam05705"
                     /db_xref="CDD:461719"
ORIGIN      
        1 ctagggccga gctagcaggg tgctgcgtga ggccccgaga gagactcggt ggttgctaag
       61 gcgggaggtc acagagcgcg gctcagggat tgggtagcgt cgagggaggt gggtggtgat
      121 tgggcggtgc ccaggaggcc ccccggtgag gtgcgggaac gtgagcgaga gttccggccg
      181 gaggcccgag ctgagggccg gcgccttcat catggcctcg gcccagctgg actacaccat
      241 cgagatcccg gatcagccct gccggagcca ggagaacagc cccaaccaag gcgggaagga
      301 ggcggggact cgacagcctt tggtgattct cttgggctgg ggtggctgca cggacaagaa
      361 cctggccaaa tacagcgcca tctaccacaa aaggaagctg cttgagctgc tctttgatta
      421 cgaggttgag aaggagcccc tgctcttcca cgtcttcagc aacgccggca tcatgctgta
      481 ccgatatgta ctggagctcc tgcagaccca ccggcgcttc tgccacctgc gtgtggtggg
      541 caccatcttt gacagtgggc ctggcgacag caacctgctg ggggctctga gggcgctggc
      601 agccatcctg gagccccggc ctgccgtgct gcgcctgctg ctcctggtgg cctttgccct
      661 ggtggcagtc ctgttccacg tcctgctggc gccactcacc tccctcttcc acacccactt
      721 ctatgacagg ctgctcgacg cagcctctcg ctggccagag ctctacctct actccagggc
      781 cgacgaggtg gtcctggcca gggacgtgga gcgcatggtg gaggcacgcc tggcgcaccg
      841 ggtcctggtg cactctgtgg acttcaagtc atctgcacac gtcagccatc tccgtgacta
      901 ccctacttac tacacgagcc tctgtgtcaa cttcatgcgc agctgcgtcc ggtgctgagg
      961 tccttgccct acccacctca cctctgctcc agaaataaat gcctgacacc ttcccataac
     1021 ctacatccat gggtggggtc ctcttctggt tcaactccct gcagccctct gggactttat
     1081 ggtcctccag gtagagaatt tccatgggcc tctgtcctgg ggactgtggt ggtctgctta
     1141 tcccaggatt cttggggcag gagtgcctgc gcaggtctct gcggaagcct agcagtggtt
     1201 gtgtttggat aagtgcaaca ggctgctgac tcctgtggca tttaggctgt gaagggttaa
     1261 taaagctgcg ggtggggggt aggggtgagg atgagcccca gcattgagtt ctgattcctt
     1321 gaatagaagg tgagctttgc agggaggtgc cagagggtag gggcaggctg gggcaggggc
     1381 tgtgatctgt gctcccaagt cccggaaggg cagagcccca cagcatggag tgccgtccct
     1441 gtggatccca tttagcagtt cactcaggct tctcattgcc agggagtcta atgtggaagc
     1501 cagatgggga gctgagggta cacaggtggg gggcctgtcc aggtgtacca cactttgcca
     1561 ggaagctgct agatccagga aagttgcaag atgtgtgtgt aatgggcaga tggagtgggg
     1621 tgcaggaaga cagcagcgcc agatgggagc taggacaagc tgagtcagga gccctaaaga
     1681 ccagaaccag aaccactggc ctgaaaaaaa ctccttcatc tccttgaggg agacgcactt
     1741 ggatcctctg taggtagaag tggtggcttc agccttagag tcctgtatca tctattattc
     1801 tacaagtcac tgctgcacaa tgctggcaca tagctggcat tcaataaatt tttgttgatt
     1861 taa
//
LOCUS       XM_032603556            1861 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 53 (TMEM53),
            transcript variant X3, mRNA.
ACCESSION   XM_032603556
VERSION     XM_032603556.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1861
                     /gene="TMEM53"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739262"
     CDS             339..956
                     /gene="TMEM53"
                     /codon_start=1
                     /product="transmembrane protein 53 isoform X3"
                     /protein_id="XP_032459447.1"
                     /db_xref="GeneID:116739262"
                     /translation="MVFFSESLGIPSLRVLAQKLLELLFDYEVEKEPLLFHVFSNAGI
                     MLYRYVLELLQTHRRFCHLRVVGTIFDSGPGDSNLLGALRALAAILEPRPAVLRLLLL
                     VAFALVAVLFHVLLAPLTSLFHTHFYDRLLDAASRWPELYLYSRADEVVLARDVERMV
                     EARLAHRVLVHSVDFKSSAHVSHLRDYPTYYTSLCVNFMRSCVRC"
     misc_feature    357..935
                     /gene="TMEM53"
                     /note="Eukaryotic protein of unknown function (DUF829);
                     Region: DUF829; pfam05705"
                     /db_xref="CDD:461719"
ORIGIN      
        1 tcagccctgc cggagccagg agaacagccc caaccaaggc gggaaggagg cggggactcg
       61 acagcctttg gtgattctct tgggctgggg tggctgcacg gacaagaacc tggccaaata
      121 cagcgccatc taccacaaaa ggccccacag tggacagccc atcccagatg tgctcccagc
      181 tgcggagtca gcccagacct caagtctctg ttggctagtg ctgcctctct gggcagcagg
      241 aacctgggcc gggtgtgctg ggcatagtct ggactcctgg ggctttctcc ttttctgacc
      301 agggctgcat cgtgatccga tacacagccc cctggcacat ggtcttcttc tctgagtccc
      361 tgggcatccc ttcacttcgt gtcttggccc agaagctgct tgagctgctc tttgattacg
      421 aggttgagaa ggagcccctg ctcttccacg tcttcagcaa cgccggcatc atgctgtacc
      481 gatatgtact ggagctcctg cagacccacc ggcgcttctg ccacctgcgt gtggtgggca
      541 ccatctttga cagtgggcct ggcgacagca acctgctggg ggctctgagg gcgctggcag
      601 ccatcctgga gccccggcct gccgtgctgc gcctgctgct cctggtggcc tttgccctgg
      661 tggcagtcct gttccacgtc ctgctggcgc cactcacctc cctcttccac acccacttct
      721 atgacaggct gctcgacgca gcctctcgct ggccagagct ctacctctac tccagggccg
      781 acgaggtggt cctggccagg gacgtggagc gcatggtgga ggcacgcctg gcgcaccggg
      841 tcctggtgca ctctgtggac ttcaagtcat ctgcacacgt cagccatctc cgtgactacc
      901 ctacttacta cacgagcctc tgtgtcaact tcatgcgcag ctgcgtccgg tgctgaggtc
      961 cttgccctac ccacctcacc tctgctccag aaataaatgc ctgacacctt cccataacct
     1021 acatccatgg gtggggtcct cttctggttc aactccctgc agccctctgg gactttatgg
     1081 tcctccaggt agagaatttc catgggcctc tgtcctgggg actgtggtgg tctgcttatc
     1141 ccaggattct tggggcagga gtgcctgcgc aggtctctgc ggaagcctag cagtggttgt
     1201 gtttggataa gtgcaacagg ctgctgactc ctgtggcatt taggctgtga agggttaata
     1261 aagctgcggg tggggggtag gggtgaggat gagccccagc attgagttct gattccttga
     1321 atagaaggtg agctttgcag ggaggtgcca gagggtaggg gcaggctggg gcaggggctg
     1381 tgatctgtgc tcccaagtcc cggaagggca gagccccaca gcatggagtg ccgtccctgt
     1441 ggatcccatt tagcagttca ctcaggcttc tcattgccag ggagtctaat gtggaagcca
     1501 gatggggagc tgagggtaca caggtggggg gcctgtccag gtgtaccaca ctttgccagg
     1561 aagctgctag atccaggaaa gttgcaagat gtgtgtgtaa tgggcagatg gagtggggtg
     1621 caggaagaca gcagcgccag atgggagcta ggacaagctg agtcaggagc cctaaagacc
     1681 agaaccagaa ccactggcct gaaaaaaact ccttcatctc cttgagggag acgcacttgg
     1741 atcctctgta ggtagaagtg gtggcttcag ccttagagtc ctgtatcatc tattattcta
     1801 caagtcactg ctgcacaatg ctggcacata gctggcattc aataaatttt tgttgattta
     1861 a
//
LOCUS       XM_032603563            1890 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 53 (TMEM53),
            transcript variant X4, mRNA.
ACCESSION   XM_032603563
VERSION     XM_032603563.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1890
                     /gene="TMEM53"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739262"
     CDS             368..985
                     /gene="TMEM53"
                     /codon_start=1
                     /product="transmembrane protein 53 isoform X3"
                     /protein_id="XP_032459454.1"
                     /db_xref="GeneID:116739262"
                     /translation="MVFFSESLGIPSLRVLAQKLLELLFDYEVEKEPLLFHVFSNAGI
                     MLYRYVLELLQTHRRFCHLRVVGTIFDSGPGDSNLLGALRALAAILEPRPAVLRLLLL
                     VAFALVAVLFHVLLAPLTSLFHTHFYDRLLDAASRWPELYLYSRADEVVLARDVERMV
                     EARLAHRVLVHSVDFKSSAHVSHLRDYPTYYTSLCVNFMRSCVRC"
     misc_feature    386..964
                     /gene="TMEM53"
                     /note="Eukaryotic protein of unknown function (DUF829);
                     Region: DUF829; pfam05705"
                     /db_xref="CDD:461719"
ORIGIN      
        1 taaggcggga ggtcacagag cgcggctcag ggattgggta gcgtcgaggg aggtgggtgg
       61 tgattgggcg gtgcccagga ggccccccgg tgaggtgcgg gaacgtgagc gagagttccg
      121 gccggaggcc cgagctgagg gccggcgcct tcatcatggc ctcggcccag ctggactaca
      181 ccatcgagat cccggatcag ccctgccgga gccaggcccc aaccaaggcg ggaaggaggc
      241 ggggactcga cagcctttgg tgattctctt gggctggggt ggctgcacgg acaagaacct
      301 ggccaaatac agcgccatct accacaaaag gggctgcatc gtgatccgat acacagcccc
      361 ctggcacatg gtcttcttct ctgagtccct gggcatccct tcacttcgtg tcttggccca
      421 gaagctgctt gagctgctct ttgattacga ggttgagaag gagcccctgc tcttccacgt
      481 cttcagcaac gccggcatca tgctgtaccg atatgtactg gagctcctgc agacccaccg
      541 gcgcttctgc cacctgcgtg tggtgggcac catctttgac agtgggcctg gcgacagcaa
      601 cctgctgggg gctctgaggg cgctggcagc catcctggag ccccggcctg ccgtgctgcg
      661 cctgctgctc ctggtggcct ttgccctggt ggcagtcctg ttccacgtcc tgctggcgcc
      721 actcacctcc ctcttccaca cccacttcta tgacaggctg ctcgacgcag cctctcgctg
      781 gccagagctc tacctctact ccagggccga cgaggtggtc ctggccaggg acgtggagcg
      841 catggtggag gcacgcctgg cgcaccgggt cctggtgcac tctgtggact tcaagtcatc
      901 tgcacacgtc agccatctcc gtgactaccc tacttactac acgagcctct gtgtcaactt
      961 catgcgcagc tgcgtccggt gctgaggtcc ttgccctacc cacctcacct ctgctccaga
     1021 aataaatgcc tgacaccttc ccataaccta catccatggg tggggtcctc ttctggttca
     1081 actccctgca gccctctggg actttatggt cctccaggta gagaatttcc atgggcctct
     1141 gtcctgggga ctgtggtggt ctgcttatcc caggattctt ggggcaggag tgcctgcgca
     1201 ggtctctgcg gaagcctagc agtggttgtg tttggataag tgcaacaggc tgctgactcc
     1261 tgtggcattt aggctgtgaa gggttaataa agctgcgggt ggggggtagg ggtgaggatg
     1321 agccccagca ttgagttctg attccttgaa tagaaggtga gctttgcagg gaggtgccag
     1381 agggtagggg caggctgggg caggggctgt gatctgtgct cccaagtccc ggaagggcag
     1441 agccccacag catggagtgc cgtccctgtg gatcccattt agcagttcac tcaggcttct
     1501 cattgccagg gagtctaatg tggaagccag atggggagct gagggtacac aggtgggggg
     1561 cctgtccagg tgtaccacac tttgccagga agctgctaga tccaggaaag ttgcaagatg
     1621 tgtgtgtaat gggcagatgg agtggggtgc aggaagacag cagcgccaga tgggagctag
     1681 gacaagctga gtcaggagcc ctaaagacca gaaccagaac cactggcctg aaaaaaactc
     1741 cttcatctcc ttgagggaga cgcacttgga tcctctgtag gtagaagtgg tggcttcagc
     1801 cttagagtcc tgtatcatct attattctac aagtcactgc tgcacaatgc tggcacatag
     1861 ctggcattca ataaattttt gttgatttaa
//
LOCUS       XR_004345511            1932 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739280
            (LOC116739280), ncRNA.
ACCESSION   XR_004345511
VERSION     XR_004345511.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1932
                     /gene="LOC116739280"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739280"
     ncRNA           1..1932
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739280"
                     /product="uncharacterized LOC116739280"
                     /db_xref="GeneID:116739280"
ORIGIN      
        1 aacccgcccg ggttttagtg gctgcgaggt cctcccaccc tactccacgg cccctcccag
       61 cgcggggctc cttccgtccc ggaaccccgc ctggctcccg cctcccgcgc ggctacccct
      121 ttgctgggga gatggcgtag gacttcctga tcgcagtggc ccgtctcacc gcgagtccca
      181 actgtctctt ccccagtccc cagcctttca tcaatcccga tattagagga ttcccaacgt
      241 ttcacctatc ttctggacaa cctttggagc tgccactggc aacgcacagc cacgcggcca
      301 aagtggaacc cagcatccct caaacaaggg ccttcttcca ggattctcag tttctaacgg
      361 gataccgcca tccactctgg tgtgcccaca ccagatagtt gagaaggaga cctccagatg
      421 gctgggatgc ttccgaagag cccacctgag cccaggtcgt cggtggcaga cgagtgtggt
      481 gatgctgtcg gagactctcc ttccctcttg atggaagcag acaacaagag ggactggaag
      541 aagaaaaagg acacgtggcc tcaggctgaa tgagacctac agtcagttcc ctagagtgtc
      601 cggacctatg gagcttttgg gatagaggca gagaaaagga gggcagaggg gtagagacca
      661 cttgagatta tgaaggcatg tggtcaggcc ccccagagtc tggttgtggg aaaggatagc
      721 ttgatcctag ggatgggtgg agacccctag agagggtcca acctcttcca ccccagcgaa
      781 tctctgtccc agtggggcag gcctcccagt gggctgagac tatatatagg ctttgttctc
      841 ccatagtgag cagagactct gggacccctc tgaagggttg ggggtaaagc cctgcctgcc
      901 cctaatacag gctggtggca gccccgctat ggagacagta aattaaatag tgtgtaagag
      961 ttgccttcgt gcagctaggg atgtacactg gctccattta tccctgtgct gtggcgatga
     1021 ccccagcaaa aatcccagca aaatgaatcc ccccatgtca atcctgcatg ggctcttcta
     1081 catatgcccg cagtttagat taatacactg tctgctttaa attgtacacg agcaccacaa
     1141 ttctaaatac cacatggcac gttcagcctg ctcttgctgc ctcttgccaa ggcctgttca
     1201 acggcaaact ggggcctgga ggcctgaaag caatccatac ttcctccccc ccaccttttc
     1261 cagcctgcac agcccagagc cggaagcata caattcccta ggaggcctcc ccagcttaga
     1321 aaaccatgcc aaatcaccac tgacagccca aagaaagcaa tttgggaaag atggagcagc
     1381 catttatcct tcatctccga ctgagcctta ggatgtgacc tgcatgcggt ggccatgctg
     1441 cacatcctca ggcaaggacc ctgggaaggg ggggcagctg ctggtctggc agggttccct
     1501 gactcagcct catcacaaga gcaggaggag ggaagaggcc aggcagggac tgggatggga
     1561 ttccctgcaa cttggagccc cttcctcacc tacccaggcc cagtgggagg cctagtgggt
     1621 gccttggccc ccagctcgga aaagaggtag gctttcaggc aatgtccttt cccttctctg
     1681 gtcccaagga ggatgctgag gaggggaagc atcgtgggcc ccctgcccct acccccccat
     1741 catgagaaag ttcacgcttg tgtgctctct ctcattctct ctaggttaga agccctgaga
     1801 ggcctcagca ttacacctgg ggcaagcgga ataaaaaaag gtcactggcg ctttttaaac
     1861 atggaccaaa aagcagtaaa atgtgttttg aaaaaaaaat cccgacatta aatcatgact
     1921 ttttgcctgg ct
//
LOCUS       XR_004345513             384 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739284
            (LOC116739284), transcript variant X1, ncRNA.
ACCESSION   XR_004345513
VERSION     XR_004345513.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..384
                     /gene="LOC116739284"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116739284"
     ncRNA           1..384
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739284"
                     /product="uncharacterized LOC116739284, transcript variant
                     X1"
                     /db_xref="GeneID:116739284"
ORIGIN      
        1 gcaacattcc aggagtgagg tgtagcgagg cccaactagg gatgtgtgtg aggacggagc
       61 agtgtcggag cagcgctcac agcctccggt agctgccagg ccagacgctc gctacactcg
      121 actgccctct agtggccaaa tccgggaagc cagccacgcc tttcaaagct acctcctagg
      181 gatagagcat tgcgggaacg tgaagaagga gctccgggct ttctggtgtc agacaaggct
      241 tcccagagga cacgatgctt ccttccactg agcatggagc tgctctctgc tttatactgc
      301 ccgtcgctgg ctggagttgg agcctaattt gtgtggccag atgaggaaat caaggcccag
      361 agaggcagag ggactcaccc acag
//
LOCUS       XR_004345514             452 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739284
            (LOC116739284), transcript variant X2, ncRNA.
ACCESSION   XR_004345514
VERSION     XR_004345514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..452
                     /gene="LOC116739284"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116739284"
     ncRNA           1..452
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739284"
                     /product="uncharacterized LOC116739284, transcript variant
                     X2"
                     /db_xref="GeneID:116739284"
ORIGIN      
        1 gcaacattcc aggagtgagg tgtagcgagg cccaactagg gatgtgtgtg aggacggagc
       61 agtgtcggag cagcgctcac agcctccggt agctgccagg ccagacgctc gctacactcg
      121 actgccctct agtggccaaa tccgggaagc cagccacgcc tttcaaagct acctcctagg
      181 gatagagcat tgcgggaacg tgaagaagga gctccgggct ttctggtgtc agacaaggct
      241 tcccagagga cacgatgctt ccttccactg agcatgggct cttcgttgcc atatggcgtc
      301 tctgggggtt taacactagc cactccttat accccacata ataggagctg ctctctgctt
      361 tatactgccc gtcgctggct ggagttggag cctaatttgt gtggccagat gaggaaatca
      421 aggcccagag aggcagaggg actcacccac ag
//
LOCUS       XM_032603588            1926 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 151
            member A (FAM151A), mRNA.
ACCESSION   XM_032603588
VERSION     XM_032603588.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1926
                     /gene="FAM151A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739288"
     CDS             98..1855
                     /gene="FAM151A"
                     /codon_start=1
                     /product="protein FAM151A"
                     /protein_id="XP_032459479.1"
                     /db_xref="GeneID:116739288"
                     /translation="MAYKKGCSKWALVSSASVALVFTIGMILCFLLQQGILPGCEQDA
                     VCRSDADMLDYLLSLGQISQHDGLLVTWYHAANSQKEMRAALSSDAVALEADVTVEGL
                     GTVNETGVPIMAHPPAIYSDNTLQQWLEAVLASSQKGIKLDFKSIKAVGPSLDLLRRL
                     TEEGRVRRPVWINADILRGPNMAIPIEVNATQFLALVQEKYSKATLSPGWTTLYLPLF
                     PNGTYTRAMVEKMQGLVEGLPQKVTFPVRAVMVRAAWPHFSWLLGQSERYSLTLWQAT
                     SDPVSVDDLLYVRDNTATHQVYYDLFEPLLSQFKQLAMNASRKQSYYTGGSLIPFLQL
                     PGDEGLSVEWLVPDIQGNRSTATMRLPDREGMILLEAGLLEPAAGDPVPIVRAPDGRV
                     LTLEFCLLQLATRTGRWGIHVHIAEPTALRPSLATLATLSTLGHLPRPVWVGATISHG
                     SFVVPGYVTGRELLTAVAEVFPHVTVAPGWPEEVLSSGYREQLLTDMLELCWGLWQPV
                     SFQLQAGPLGQSTAGVVARLLAASPRATVTVEHSPGWGSYASVRAVLLAARAVERTRV
                     YYRLPQSSYQDLLADVGRK"
     misc_feature    293..1015
                     /gene="FAM151A"
                     /note="Uncharacterized conserved protein (DUF2181);
                     Region: DUF2181; pfam10223"
                     /db_xref="CDD:463007"
     misc_feature    1202..1816
                     /gene="FAM151A"
                     /note="Uncharacterized conserved protein (DUF2181);
                     Region: DUF2181; pfam10223"
                     /db_xref="CDD:463007"
ORIGIN      
        1 acctgcctca gcaggagacc ctccaacagt agcagctctg agagcctcag gagactgcac
       61 cgcgaggagt gtggggcatt tcccagagag ggtcatcatg gcctacaaga aggggtgctc
      121 gaagtgggcc cttgtcagca gtgccagtgt ggctctggtg ttcaccatcg ggatgatcct
      181 gtgcttcttg ctgcagcagg gcatcctgcc aggctgtgag caggatgcgg tctgccgctc
      241 cgacgcggac atgctggact acctgctgag cctgggtcag atcagccaac acgacggcct
      301 tctggtcacc tggtaccatg ctgccaacag ccagaaggag atgagggctg ccctcagcag
      361 tgacgctgtg gccctggagg cagatgtcac ggtagaaggg ctcggcacag tcaatgagac
      421 aggggtcccc atcatggcgc accccccagc catctacagt gacaacaccc tacagcagtg
      481 gctggaggcc gtgctggctt cttcccagaa gggcatcaaa ctagacttca agagcatcaa
      541 ggccgtgggc ccctccctgg acctcctgcg gcggctgacc gaggagggga gagttcggag
      601 gcctgtgtgg atcaatgccg acatcctgag gggccccaac atggccatcc cgatagaagt
      661 caatgctaca cagttcctgg ccttggtcca ggagaagtat tctaaggcaa ccctgtctcc
      721 aggctggacc accctctacc tgcccctgtt cccaaacggg acatataccc gagccatggt
      781 agagaagatg caggggctgg tggaaggact gccacagaag gtcaccttcc ctgtgcgggc
      841 tgtcatggta cgggctgcct ggccccactt cagctggctg ctgggccaat ctgagaggta
      901 cagcctgacg ctgtggcagg ccacctcaga ccccgtgtca gtggacgatc tcctctacgt
      961 ccgggacaac accgccaccc accaagtcta ctatgacctc ttcgagcctc tcctgtccca
     1021 gttcaagcag ctcgccatga acgcctcacg gaagcaaagc tattacacgg gaggcagcct
     1081 gatccccttt ctccaactcc ctggggatga ggggctgagc gtggagtggc tggttcctga
     1141 catccagggc aacaggagca cagcgacaat gcgactccca gacagagaag gcatgatcct
     1201 gctggaagct ggcctcctgg agcctgcagc tggggacccc gtgcccatcg tacgtgcccc
     1261 agatggccgt gtcctgacac tggagttctg cctgctgcag ctggccacgc gcaccggacg
     1321 ctggggcatc catgtgcaca tagcagagcc cacggccctc cggccatccc tggccacact
     1381 ggccaccctc tccacccttg gccacctgcc taggcctgtg tgggtcgggg ccacaatctc
     1441 ccacgggagt tttgtggtcc ctggctacgt gactggcagg gagttgctta cagctgtggc
     1501 cgaggttttc ccccatgtga cagtggcacc aggctggccc gaggaagtgc tgagcagtgg
     1561 ctacagggaa cagctgctca cagatatgct ggagctgtgc tggggcctct ggcaacccgt
     1621 gtccttccag cttcaggctg ggccgctggg ccagagcacg gctggagtcg tggcccggct
     1681 gttggcagcc tccccccggg ccactgtcac agtggaacac agccctggct ggggcagcta
     1741 tgcatctgtg cgggcagtgc tgctggcagc cagggccgtg gagaggaccc gagtctacta
     1801 caggctaccc cagagttcct accaagactt gctggcggat gttggcagaa agtgaccacc
     1861 caggggtgct gggctggtgg agccacgggg gtggcaggaa ggaataaatg tctctgcctc
     1921 cctcgg
//
LOCUS       XM_032603598            6641 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 14 (KIF14), mRNA.
ACCESSION   XM_032603598
VERSION     XM_032603598.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                VOSU01000011.1     184110549-184110608 c
            61-1255             VOSU01000011.1     184106199-184107393 c
            1256-1510           VOSU01000011.1     184104074-184104328 c
            1511-1565           VOSU01000011.1     184103512-184103566 c
            1566-1598           VOSU01000011.1     184103478-184103510 c
            1599-1697           VOSU01000011.1     184099754-184099852 c
            1698-1750           VOSU01000011.1     184098706-184098758 c
            1751-1781           VOSU01000011.1     184097396-184097426 c
            1782-1889           VOSU01000011.1     184096858-184096965 c
            1890-2006           VOSU01000011.1     184095375-184095491 c
            2007-2122           VOSU01000011.1     184094535-184094650 c
            2123-2295           VOSU01000011.1     184093135-184093307 c
            2296-2443           VOSU01000011.1     184092022-184092169 c
            2444-2507           VOSU01000011.1     184091664-184091727 c
            2508-2692           VOSU01000011.1     184090884-184091068 c
            2693-2795           VOSU01000011.1     184087747-184087849 c
            2796-2956           VOSU01000011.1     184086763-184086923 c
            2957-3104           VOSU01000011.1     184083931-184084078 c
            3105-3257           VOSU01000011.1     184083409-184083561 c
            3258-3384           VOSU01000011.1     184081808-184081934 c
            3385-3478           VOSU01000011.1     184079645-184079738 c
            3479-3611           VOSU01000011.1     184078991-184079123 c
            3612-3712           VOSU01000011.1     184075947-184076047 c
            3713-3807           VOSU01000011.1     184072096-184072190 c
            3808-4032           VOSU01000011.1     184069064-184069288 c
            4033-4214           VOSU01000011.1     184068710-184068891 c
            4215-4373           VOSU01000011.1     184066021-184066179 c
            4374-4496           VOSU01000011.1     184065292-184065414 c
            4497-4571           VOSU01000011.1     184061602-184061676 c
            4572-4710           VOSU01000011.1     184060653-184060791 c
            4711-6641           VOSU01000011.1     184058360-184060290 c
FEATURES             Location/Qualifiers
     source          1..6641
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6641
                     /gene="KIF14"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 long SRA reads, 5 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739299"
     CDS             174..5093
                     /gene="KIF14"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: kinesin-like protein KIF14"
                     /protein_id="XP_032459489.1"
                     /db_xref="GeneID:116739299"
                     /translation="MSVYTVQSRNDSNILGIPSSPKSSSLPLLPHGSRLKQHSKSDMS
                     ECENDDPLLLSASKTRDINSTYVISACKKTEDTPLPPNPVGRLTLQRRVTRSKESSLL
                     GELGDTTAKTAETCLALQRRAKTDSVEKWKAAQNVGGKGENNCASPETSINVKTVNND
                     RNFLVIPSVPFAAEPKDPEVKAGGKYKETLSAVGGADENVALKSLSDRPPAGSQSQTE
                     AVRSGRLATKPIQSKLDIRVSGTGSLHHRSAGKDGAKLAPKFESLEKRTPSKCVTEHR
                     STPKHGTPQFKSPAASVLKSRMPTLQVKQRPKSSLLANKRERSRENIFLLEEETALRR
                     TSTETDPLKVENSQVTVAVRVRPFSTREKSEETSQVVFLNGEEIAVEHPSMRQVYSFV
                     YDLSFWSVDECHPRFANQTAVYEALAAPLLEQAFEGFNTCLFAYGQTGSGKSYTMMGF
                     SEEPGIIPRFCEGLFAEIARKQTQEVSYHLEMSFFEVYNEKIHDLLVCKGENGQRKQT
                     LRVREHPASGPYVEGLSTNVVSSYSDIQIWLELGNKRKATAATGMNDKSSRSHSVFTL
                     VMTQTKTEFVEGEELDHRIRSRINLVDLAGSERCSETQTSGERLKEGVSINKSLLTLG
                     KVISALSEQASGKRTFIPYRESVLTWLLKESLSGNSKTSMIATVSPAASSVEETLSTL
                     RYATQARMIVNAARVNEDVSAKLIRDLKAEIEKLKAAQRSSQNIDPERYRLCRQEITS
                     LRMKLYQQERDMAEMQRMWKEKLEQAENRKLQVTKELQKAGITFQMDNHLPNLVNLNE
                     DPQLSEILLYMIKEGTTTVGKYKPNSSRDIQLSGVLIADEHCTINNFDGTVSIIPAGE
                     AKTYVNGRLILEPTVLHHGDRVILGGDHYFRFNHPVEVQKGERPPSRDTLVSEGPRDF
                     ESAKNDLLLAQRLQLEAEIKEAQLKAKEEMMQGIQIVKEMAQQELSSQKAVYESKIKV
                     LEAELKEECQRKKIQEINNQKANYKIEELEKAKQRFEQEIYVNKKRLEMETLAAKQAL
                     EDHRIRHARILEALETEKQRIAKEVQVLQQNQSNRDKTFTIQPSWSSMKLSMMIQEAN
                     TISNKLKKNYVFGRHVVSDKGSSSDTCIQVRNLQLGVSTVWSLEKFESKLAAMKELYE
                     SHCSNKGEDVFCDPEDEWEPDITDVPVSSFSRRRSRTLMKNRRISSCLHGIAAPAAQD
                     LHSSHSSGLAGKSSPVYPDSAESFLPGVCKELIGSSLELLGQSDDEENTVADNLISNF
                     LKIHDGILAVSRAHEEQDEDSQSSVFSDRANQSLAVQVASAFERLVVLTRHWLSGVPA
                     RPGTGASPAELRREVRKLGGCLQLFLQGCSSDISSMVKEAQKQVIQIVHQAIKYAGQL
                     AALSGDQLRSLESSDCGAAGLQDDFMGAICDGVGLGMESLLDSGLEKAKELERALRRQ
                     SPRDEVTKQLKANAIGLIESLENLFAEWKTKGFRAQVQEENSGYQDVKKMLNFAPEFL
                     KLKHCLEQTIQMIISALRGHRGHVALLQDCVQSLCSSARGLHGDRARHRELESRATSL
                     LLGFEFEERPGFLGPWEACDGDPTAAGREQPEADRPGPRRTRGVPKRVYELPRPAPGG
                     SEQGVLPTQEGAAWGSPTAGEQSDHFTDI"
     misc_feature    1212..2267
                     /gene="KIF14"
                     /note="Kinesin motor domain, KIF1_like proteins; Region:
                     KISc_KIF1A_KIF1B; cd01365"
                     /db_xref="CDD:276816"
     misc_feature    order(1239..1241,1482..1484,1491..1493,1497..1508,
                     1950..1952)
                     /gene="KIF14"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:276816"
     misc_feature    order(2103..2105,2112..2114,2121..2123)
                     /gene="KIF14"
                     /note="microtubule interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276816"
     misc_feature    2256..2612
                     /gene="KIF14"
                     /note="Kinesin-associated; Region: Kinesin_assoc;
                     pfam16183"
                     /db_xref="CDD:465047"
     misc_feature    2523..2846
                     /gene="KIF14"
                     /note="forkhead associated (FHA) domain found in
                     kinesin-like protein KIF14 and similar proteins; Region:
                     FHA_KIF14; cd22707"
                     /db_xref="CDD:438759"
     misc_feature    <2931..>3377
                     /gene="KIF14"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
ORIGIN      
        1 cggcggcgga ggcgtgagcg gcgcgggaag gcctggggcc tgctaggtgg ggtacgcgag
       61 cagatagttt tggaaactga tgcagaagga atggccagaa gttaaatgaa cgtccgaaga
      121 agagcttaaa gtttcttcag caacatcctt tctaaaaata acttgttgcc acaatgtcag
      181 tttacactgt acagagtaga aatgacagca atatccttgg tatcccttct tccccaaaga
      241 gttcatcgct gcctcttctc ccccacggta gcaggctgaa gcagcattca aagtcggata
      301 tgtcggaatg tgaaaatgat gatccgttat tgctatccgc aagtaaaacc agagacataa
      361 atagcactta tgttatctct gcctgtaaaa aaacggaaga tacacccctt ccccctaacc
      421 ctgtgggtag gttaacactt cagaggagag tgacaaggag caaagaatcc tctctgcttg
      481 gtgagttggg agacacaact gcgaaaacag cagaaacatg tcttgcgtta caacgtcggg
      541 ctaagacaga ttctgtggaa aagtggaaag cagcgcagaa tgtgggaggt aaaggagaaa
      601 acaattgtgc ttcaccagaa actagtataa atgtaaagac tgtgaataat gatagaaact
      661 ttcttgtcat accttctgta ccttttgctg cagagccaaa agaccctgag gtgaaggctg
      721 gtggaaaata caaagaaacg ctttccgctg tcggtggggc agacgaaaat gttgccctta
      781 agtccctaag tgatagacca cccgctggtt cccagagtca gactgaagct gttagatcag
      841 gacgcttggc aacaaaacct attcagagca agttggatat cagagtgtca ggaacaggaa
      901 gtttacatca cagaagtgct gggaaggatg gtgcgaaact tgcacctaaa tttgaaagct
      961 tagagaaaag aacaccttcg aagtgtgtta cagagcacag atcgacacca aagcatggca
     1021 ctcctcagtt taagagtcca gctgcgtcag ttctgaaaag caggatgcct acccttcaag
     1081 ttaaacaaag gccgaaaagt tctcttctcg caaacaaaag ggaacggtca cgagaaaaca
     1141 tattccttct tgaagaagaa actgcacttc ggagaacctc tacagaaaca gaccccctaa
     1201 aagtggaaaa cagtcaagtg acggtggcag tcagagtcag gcctttcagc acgcgagaga
     1261 agagtgaaga aacatcccag gtggtcttcc tgaacgggga agaaatagct gtggaacatc
     1321 ccagcatgag acaggtgtac agttttgttt acgacctttc cttctggtcc gttgatgagt
     1381 gtcatccccg cttcgcgaac cagacggccg tgtacgaggc actggcagcc ccgctcctgg
     1441 aacaggcctt tgaaggcttc aacacctgtc tctttgctta cggtcagact ggctctggaa
     1501 agtcctatac gatgatggga tttagtgaag aaccaggaat aattccaaga ttctgtgaag
     1561 gtctttttgc tgaaatagcc agaaaacaaa cccaggaggt cagctatcac cttgaaatga
     1621 gcttctttga agtatataat gaaaaaattc acgaccttct ggtttgtaaa ggtgaaaatg
     1681 ggcagagaaa gcaaacactg agagtgcggg agcacccggc ctccggcccc tacgtcgagg
     1741 gcctgtccac gaatgttgtc agctcttact ctgatatcca gatttggctg gaactgggaa
     1801 ataagaggaa ggcaactgcg gccactggca tgaatgacaa aagctcccgc tcgcactcag
     1861 tgttcaccct ggtgatgacc cagaccaaga cagaatttgt ggaaggggaa gagctggatc
     1921 acagaattcg gagccgtata aacctggtgg acctggcggg cagtgagcgc tgttccgaga
     1981 cccagacaag cggggaacgg ctgaaggaag gcgtgagtat taacaagtcc ctgctgaccc
     2041 tgggaaaggt catatctgcg ctctccgagc aggccagcgg gaagagaaca ttcattcctt
     2101 accgcgagtc tgtcctcaca tggctgctga aggaaagtct gagcggaaat tccaaaacgt
     2161 cgatgatcgc cacggtcagc ccggcggcca gcagcgtgga ggagaccctg agcacgctga
     2221 gatacgccac ccaggcccgg atgatagtca acgccgccag ggtcaacgag gacgtgagcg
     2281 ccaagttgat cagagacttg aaagcagaaa ttgaaaagtt aaaagctgct caaagaagca
     2341 gtcagaacat tgaccctgag cgatataggc tctgtcggca agaaataaca tccttgagaa
     2401 tgaagctgta tcagcaggag agagacatgg cagaaatgca aagaatgtgg aaagaaaaac
     2461 ttgaacaagc tgaaaacagg aaacttcaag taacaaagga gttacagaaa gcaggaatta
     2521 catttcaaat ggacaaccat ttgccaaacc tggtcaatct caacgaagac cctcagctgt
     2581 cggagatact gttatatatg ataaaagagg gaacaactac agtcggaaag tataaaccaa
     2641 actcgagccg tgacatccag ttgtcggggg tgctgatcgc cgacgagcac tgcaccatca
     2701 acaatttcga tgggaccgtg agtatcatcc cagctgggga agcaaagaca tatgtaaatg
     2761 gaagacttat tttggaaccc acggtattac atcatggtga tcgggtgatt cttggtggcg
     2821 atcattattt tagatttaat catccagtag aagtccagaa aggggaaaga ccgcccagta
     2881 gagatactct tgtgagtgag ggtccaagag acttcgaatc tgcaaaaaat gacttgctct
     2941 tggcacagag attacaactt gaagcagaaa taaaggaggc gcagctgaaa gcaaaggaag
     3001 aaatgatgca gggaatccag atcgtgaaag aaatggctca gcaagagctt tcctctcaaa
     3061 aagctgtgta cgaaagcaaa ataaaagtcc tggaagcaga actgaaagaa gaatgtcaaa
     3121 gaaagaagat acaggaaata aataaccaaa aggctaatta caaaatcgag gaactagaaa
     3181 aggcaaagca gcgttttgaa caggaaatat atgtcaacaa aaagcggtta gaaatggaga
     3241 ctttggctgc gaaacaggct ttagaagacc acaggatccg ccatgcaaga attctggaag
     3301 ctttagaaac tgagaaacaa aggattgcta aggaagtaca agttctacag caaaatcaga
     3361 gtaacaggga taaaactttc acaattcagc ccagttggag ctccatgaaa ctctccatga
     3421 tgattcagga agccaatacc atcagcaaca agttaaaaaa gaattatgtt tttggcagac
     3481 atgttgtatc agataaagga agtagttctg acacttgtat tcaggttcgt aacctgcaac
     3541 taggggtctc aactgtctgg agtctggaaa agtttgagtc taagcttgcg gcaatgaaag
     3601 aactttacga gagccattgt agtaacaagg gtgaagatgt gttttgtgac cctgaagatg
     3661 aatgggaacc cgacatcaca gatgttccag tgtcttcatt ttccagaagg aggagcagga
     3721 ctctgatgaa gaacaggagg atttccagct gcctgcatgg catagcggcc cccgcggccc
     3781 aggatttgca ctcttcacat tcatcaggct tagcggggaa atcaagcccc gtgtacccag
     3841 attcagcaga atcctttctt cctggagttt gcaaggaatt gattggctca tcgttagagc
     3901 ttcttggaca gagtgatgat gaagaaaaca ctgtcgcgga caacttgatt agtaatttcc
     3961 ttaaaatcca cgacgggata ctcgccgtgt ccagagctca tgaagaacag gacgaagaca
     4021 gtcagagtag cgtgttctcc gatcgagcaa accagtcgct cgctgtgcag gtggcgagcg
     4081 ccttcgagcg gctcgtggtg ctgacgagac actggctgag cggcgtcccc gccaggcccg
     4141 gcacgggggc ttcgccggcc gagctgagac gggaagtgag gaagctggga ggctgcttac
     4201 aattgttcct gcagggatgc tcttcagata tttcatcaat ggtgaaagag gctcaaaagc
     4261 aggtgatcca gattgtacac caagccatca agtatgcggg gcagttagca gctctcagcg
     4321 gggaccagct gcgctccctg gagagcagcg actgcggggc tgccggcctc caggatgatt
     4381 tcatgggtgc tatttgtgat ggtgtaggct tgggaatgga gagtctccta gattctggac
     4441 tagaaaaagc aaaagaactc gagcgtgcac tccgaaggca gagtcctcga gatgaggtta
     4501 ccaagcagtt gaaagctaat gccataggat tgattgaatc ccttgaaaac ctctttgctg
     4561 agtggaaaac aaaaggcttc agagctcaag tgcaagaaga aaactctgga taccaagatg
     4621 tgaagaagat gctgaacttc gccccagaat tcttgaagtt aaagcattgc ttagagcaga
     4681 ctattcaaat gattatttct gcactgagag ggcaccgcgg ccacgtagca ctcctccagg
     4741 actgtgtcca gagtctctgc agctcggcca ggggtcttca cggtgaccga gcccgccaca
     4801 gggagctgga atctcgagct acctcactcc tcttgggttt tgaatttgaa gaaagacctg
     4861 gtttcttggg accctgggaa gcttgtgatg gggatcccac agcagcagga cgagagcagc
     4921 ctgaggcaga caggcccggc ccccggagga cccgaggtgt acccaagcgg gtgtatgagc
     4981 tcccgcgccc ggccccgggg ggctcagagc agggcgtgct gcccacccag gagggcgctg
     5041 cttgggggtc tcccaccgcc ggagagcaga gtgaccactt cacagacatc tagtctgtgg
     5101 gtggcctcct gttgggtgtg gacacataaa cggagtggat cctgatttca gatgcctgtg
     5161 tgtgcaccca gaggtttccc ggcggacagt ttaaaacagg tatttactat gttggaactt
     5221 tgtggcaata ggatggaatt aggagttcaa agccgagtga gcagcccttc ctctggtttt
     5281 ccatcgcctt gaattgtccg tgttcatctt tgacgctgac gagcaggctc tggttggctc
     5341 actagcccgt cggtaaaggg tttttgtggt gattgtggtg attgtgagtt attttcctgc
     5401 gagtggaaac ttttgtgcct gtatctgcgc tcccctgcaa atagcaacga tgagttttat
     5461 ggtgaaactg ctaaaacaag tctagccaga gcagcttaac ctgcaccggt aaatctaaag
     5521 ctcttttctt gaagggttaa tgggctgctg ttctgagtcg tgtgttcagg acacagtttc
     5581 ctgtttcttt ccagattata aggagcttcc taagtatagt atagtttaca ttaacagtgc
     5641 ggcttgctgg catactagtt tactcgttgt ctgttggggg tcatattagg ggctgtgcga
     5701 gtatcattta cagccaatta aatactgcca gaagcagact tgacggttgg atgaggttgg
     5761 gagaccagag gctgggtcgt ttcttgataa tccttgtttg gtaaacgagc aatgagagtt
     5821 tgtatgtgat ttgatgacga ttaaaggtcc tcactgtgtc tcacagcctt atctacagtc
     5881 aggtaataaa gatgacattg ttacttcagg cgtcttccat tgaggaaata gtttgacatt
     5941 tctgatggca gaaacgtttg taaattgaag agatacacag tgaccttgct tgggtgatgt
     6001 caagcatttc ttggagaaga actgttttaa ctaaccaggc ctttccctct gcccttgtcc
     6061 ctcgcagaca cactgcgtgc ctggcacggc tgctgggagc cggctcttgg cgccagggct
     6121 gagcgtgatg attttctcgt tagacagagc ttgttctgac acagcgacca gtacttactt
     6181 acggtgttaa tgaaccatgt gttttcaggt gctttaaaat ggtgcagtgt aagaaatgtg
     6241 cttttgtttt cttttttctt ttatttttgg catttgagct tgtgttcctt ctgaggttcc
     6301 gtacgtatct gtcatagctg atgctctacc aagtggcact ttgatgcgaa gttttacgaa
     6361 gagtaggtgt gcagacaagg gtcctctctg aagaccttaa agtattagtg tggtgggttt
     6421 tatcttaatt ttcagtattt aatctttact tttgctttct aaactcctga ttcattggtc
     6481 agaaacctct tttttattgt ctttgtaaga ttttgtacat acagatattt atactccgga
     6541 ccgttacatg gtatttgaac caagggtgga gaacgtattt gccattagaa tcatgtgcgc
     6601 taataagaca tgttataata aaggaaatgc cttcaacagg c
//
LOCUS       XM_032603612            2022 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BarH like homeobox 2 (BARHL2), mRNA.
ACCESSION   XM_032603612
VERSION     XM_032603612.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2022
                     /gene="BARHL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 Proteins, and 6%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739305"
     CDS             107..1261
                     /gene="BARHL2"
                     /codon_start=1
                     /product="barH-like 2 homeobox protein"
                     /protein_id="XP_032459503.1"
                     /db_xref="GeneID:116739305"
                     /translation="MTTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADF
                     RSQATPSPCSEIDTVGTAPSSPISVAMEPPEPHVIADGPQHHHHLHHSQQPPPPPPTA
                     AAPTQSLQPSPQPPPPQPPAQQLGSAASVPRTSTSSFLIKDILGDSKPLAACAPYSTS
                     VSSPHHTPKQESNAAHESFRPKLEQEDSKTKLDKREESQSDIKCHGTKEEGDREITSS
                     RESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTW
                     YQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAM
                     YSSMYRTPPAPHPQLQRPLVPRVLIHGLGPGGQPALNPLSNPIPGTPHPR"
     misc_feature    794..964
                     /gene="BARHL2"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 agcggcgaca acattgtttc gtgttattct gctttacgat cgatagcttc ctttgcttgg
       61 tcggggcggc agcggagcgg cggagtggcg tggacctcat gtagaaatga caacaatgga
      121 aggggccagc gggtcgagtt ttggaataga cacgattttg tccagtgcca gttcgggcag
      181 ccccggcatg atgaatggag atttccgccc gctcggcgag gccaggaccg cggattttag
      241 gagtcaggcc actccgtctc cctgttcgga gattgatact gtaggaacag cgccttcctc
      301 tcctatctcg gtcgccatgg agcccccgga accgcatgtg atagcggacg gcccccagca
      361 tcaccaccac ctccaccaca gccaacagcc gccgccgccg ccgccgacag ccgcggcccc
      421 cacgcaaagt ttgcagcctt cgccgcaacc gccgccgccg cagccacccg cccagcagct
      481 gggctcggcc gcctcggtcc ccaggacttc cacctcttct tttttaatta aggacatctt
      541 gggcgacagc aaacctctgg cggcgtgtgc accgtacagc accagcgtct cctctcccca
      601 ccacaccccg aagcaggaga gcaacgcagc acacgagagc ttcaggccaa agctcgagca
      661 ggaggacagc aaaaccaaac tcgacaagcg ggaagagtcc cagagcgaca tcaaatgcca
      721 cggaacaaag gaggaaggag accgggagat tacgagtagc cgagagagtc cccctgtgag
      781 agccaaaaaa cctcgcaaag ccaggacggc tttctccgac caccaactca atcaactgga
      841 gcgtagcttt gagcgacaga agtacctgag tgtgcaggac cgcatggacc tggcagctgc
      901 gctcaatctc actgacaccc aggtcaagac ctggtaccag aaccgcagga ccaagtggaa
      961 gcggcagact gcggtgggcc tggagctgct ggccgaggca gggaattact cggcactgca
     1021 gaggatgttt ccgtcgcctt atttctacca cccaagcttg ctgggcagca tggacagtac
     1081 taccgccgcg gcggccgccg ccgccatgta cagcagcatg taccggactc ctcctgcacc
     1141 ccatccccag ctgcagcggc ccctggtgcc ccgagtgctc atccacggcc tggggcctgg
     1201 gggacagccg gccctcaatc ccctgtccaa ccccatccca ggcaccccac atccccggtg
     1261 aagagcaagt cactgtccct ccctgtcccc tccccgaccc ggacagctgc ccctcctctc
     1321 ccggcaccag gctgtccggc ctcccttgca gccaaccggg tagcaaagaa gtaagagagg
     1381 aagacactca ccagcgggtg gagggggggc ccaaagagga gccagccctc cactctccat
     1441 ctccccaccc ccagagacag ggctggaaag ctccccacag gagtgtgact ggcgaaaacg
     1501 ccgactccac acaaagtgcg accagtaagt gaaaacatca acaaaaacaa aacctcaagt
     1561 tctttttaaa aaatgacttt agggacaagc aggagggagg gagggggggt ggggtaagga
     1621 gggaagaaag aagggcacgg agaggaaacc acacaggcag agagaattgt agatgaacag
     1681 cctcaaattc cgaggcagag ggcgttgccg tggacattcc gactgcccca gagaaaagag
     1741 gagggtaact gagaactttg cactgatttc tcatgacctt ttttcttttg gaaaagtggc
     1801 atgctccata atatgaaaaa aaaaatgtac attggaaaga ctgagtgata agtgatatat
     1861 catatttatt atatgttgtc caaaaaagtc acttatatac attagtaaaa catgattttt
     1921 cttttcatgt ctttttgatt cagtaaaata aatgcttaga caaaaatata gatttttttg
     1981 tgattgaaaa ttacagaaat aaagtttatc tttttttaac aa
//
LOCUS       XM_032603621             976 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X1, mRNA.
ACCESSION   XM_032603621
VERSION     XM_032603621.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..976
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739310"
     CDS             554..955
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X1"
                     /protein_id="XP_032459512.1"
                     /db_xref="GeneID:116739310"
                     /translation="METTHAFLAALGFFQTGGISQKGGGRGPWNGVTMAPLEQAVAAI
                     VCTFQEYSGPCWRQVKLCQAERKELLEKELPTWTPTELRECDHNKFMSVLDTSKDREV
                     DFVEYTCLLACLCACCHEYFKNCALGPHCSQ"
     misc_feature    659..874
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(707..709,722..724,731..733,746..751,836..838,
                     842..844,848..850,854..856,860..862,869..871)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 ggtgaaggaa gtcagatatg atgggttcag gggttccctt gtacagtgag gggctgctgg
       61 ggaacctggg tttagggggt gtgcagagct gaggtctggc ggaggggtcg ggggaatgct
      121 gctgttgccc tcagtcagct cccccttcgc ccacaccttc cattcctgcc aacgggttga
      181 gatgggccag ggctgtgggg aagagaggat tccctccagt ctccaggcac cgagcttctg
      241 acaaagcaac agtggtggcg ccaggcaggc tggcaggagc ccagaagggc aactcggccc
      301 ctctgaggtt ccctattccc tgcgatcacg gccctttcct ctcctgggaa cccggaaccc
      361 tactccaagc ctgggctgtc acaaagcgtt agaccccagg cagcacttaa ccccattctt
      421 cttccctccg accgtgacca tctacagggc ctggcagaga gtaaatcatt agggagaggg
      481 ccttggccca ggctgcctcg tgctacagga ctcctgtccc ctgggggcac caggagtgag
      541 tcactgggct cacatggaaa caacacatgc cttcctggct gccttaggat ttttccagac
      601 tggaggcatc tcccagaagg gcggtgggag gggcccgtgg aatggggtaa cgatggcgcc
      661 tctggagcag gccgtggctg ctattgtgtg caccttccag gaatattcag ggccctgttg
      721 gagacaagta aagctctgcc aggcagagcg caaggagctg ctagagaagg agctgcccac
      781 ctggaccccg acagagcttc gggaatgtga ccacaataag ttcatgagtg tcctggacac
      841 cagcaaggat cgagaggtgg actttgtgga gtacacgtgc ctgcttgcct gcctctgcgc
      901 ctgctgccat gagtacttca agaactgcgc cctgggcccc cactgctccc agtaatgggc
      961 ggggctgcca tcggag
//
LOCUS       XM_032603632             532 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X2, mRNA.
ACCESSION   XM_032603632
VERSION     XM_032603632.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..532
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739310"
     CDS             200..511
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X2"
                     /protein_id="XP_032459523.1"
                     /db_xref="GeneID:116739310"
                     /translation="MVTMAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKEL
                     PTWTPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCS
                     Q"
     misc_feature    215..430
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(263..265,278..280,287..289,302..307,392..394,
                     398..400,404..406,410..412,416..418,425..427)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 ctgagtaagg gggagatgaa gaaacttctg cacaaggagc tgcccagctt tgtggggaag
       61 aaggtggatg aggagggccc gaagaggatg atgggtgatc tggataagaa cagagaccag
      121 gaggtggact tccagggggt gaagacatag gggatggctg tgatgaatga cctgtcttct
      181 ctaaccaggc tggaaggaga tggtaacgat ggcgcctctg gagcaggccg tggctgctat
      241 tgtgtgcacc ttccaggaat attcagggcc ctgttggaga caagtaaagc tctgccaggc
      301 agagcgcaag gagctgctag agaaggagct gcccacctgg accccgacag agcttcggga
      361 atgtgaccac aataagttca tgagtgtcct ggacaccagc aaggatcgag aggtggactt
      421 tgtggagtac acgtgcctgc ttgcctgcct ctgcgcctgc tgccatgagt acttcaagaa
      481 ctgcgccctg ggcccccact gctcccagta atgggcgggg ctgccatcgg ag
//
LOCUS       XM_032603642             607 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X3, mRNA.
ACCESSION   XM_032603642
VERSION     XM_032603642.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..607
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739310"
     CDS             275..586
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X2"
                     /protein_id="XP_032459533.1"
                     /db_xref="GeneID:116739310"
                     /translation="MVTMAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKEL
                     PTWTPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCS
                     Q"
     misc_feature    290..505
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(338..340,353..355,362..364,377..382,467..469,
                     473..475,479..481,485..487,491..493,500..502)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 agtcctctgg agtaggcgct ggctgtgatg gtcaccacct tccacaagta ctctggccaa
       61 gagggtgaca acttcaagct gagtaagggg gagatgaaga aacttctgca caaggagctg
      121 cccagctttg tggggaaggt ggatgaggag ggcccgaaga ggatgatggg tgatctggat
      181 aagaacagag accaggaggt ggacttccag ggggtgaaga cataggggat ggctgtgatg
      241 aatgacctgt cttctctaac caggctggaa ggagatggta acgatggcgc ctctggagca
      301 ggccgtggct gctattgtgt gcaccttcca ggaatattca gggccctgtt ggagacaagt
      361 aaagctctgc caggcagagc gcaaggagct gctagagaag gagctgccca cctggacccc
      421 gacagagctt cgggaatgtg accacaataa gttcatgagt gtcctggaca ccagcaagga
      481 tcgagaggtg gactttgtgg agtacacgtg cctgcttgcc tgcctctgcg cctgctgcca
      541 tgagtacttc aagaactgcg ccctgggccc ccactgctcc cagtaatggg cggggctgcc
      601 atcggag
//
LOCUS       XM_032603649            1862 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X4, mRNA.
ACCESSION   XM_032603649
VERSION     XM_032603649.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1862
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739310"
     CDS             1530..1841
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X2"
                     /protein_id="XP_032459540.1"
                     /db_xref="GeneID:116739310"
                     /translation="MVTMAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKEL
                     PTWTPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCS
                     Q"
     misc_feature    1545..1760
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(1593..1595,1608..1610,1617..1619,1632..1637,
                     1722..1724,1728..1730,1734..1736,1740..1742,1746..1748,
                     1755..1757)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 agtcctctgg agtaggcgct ggctgtgatg gtcaccacct tccacaagta ctctggccaa
       61 gagggtgaca acttcaagct gagtaagggg gagatgaaga aacttctgca caaggagctg
      121 cccagctttg tggggaaggt ggatgaggag ggcccgaaga ggatgatggg tgatctggat
      181 aagaacagag accaggaggt ggacttccag gggtgaggaa aatgaggccc agagaggtga
      241 ggtgacctgc ttaagggagg tggctgttgg cagagatggg ctgtcacagg tgggaataag
      301 ggcttgacct agaactgaat gaattgctgg tctactctgg cctctgcttc tgtcccctac
      361 tccccataat tccttgccta taaaacaggg ttaatcacag ccctcctttc cctgcccccc
      421 cccaccccca ctgttcgctc ccatcaccca caggggctga gtcttcgggg aggtgatggc
      481 acagttgagg tttgggggca gggggcctgg gaagaggcca aggtgtcatg agctctctgg
      541 ctgccccaca agtattaggg cttcttcaga ggcctggggg ttgactcctc ttccccttcc
      601 cacactcttc tggtcttggg ttccctttct gtgaaatggg gaggggtctc tcaggcccag
      661 ggatgagggc gggagaagtg atacgaagag atttccgttt ctggcaacat ggtggtctgt
      721 gccagctccg gctgaaaaga aaacaaaaag tgctggatag aataaaaaca cctttttcaa
      781 agcgttgaag agctcacaag gcattaaaga atgggatcaa aatcttagcg aaagcagact
      841 ccaggaagtg agtggggcac tggggcccct catgccctga gggcatcggc caaactgagc
      901 caaagtgacc tttggctttg acggagtgtg gagtgaggag gggctcgctt gaggggggga
      961 ggcaaggggg acaccccaca taacgctgag accccaaagg gctacacgct taagccaaaa
     1021 accagaggaa atctacccgc accccatggg agtgtaggga acttggcctt ggtgctgaat
     1081 ggagccaggg aggacaggaa acaggcctta ggagctcaag ctccaggcca ccctggtgtg
     1141 agtctgaact aggggaggag gaggggcacc aggagaacac agcctagact tctggaagcg
     1201 cccctaggag cagcacacct tcctcccggg cctcaaagac atcctacggg tgaccttccc
     1261 ggggaagcaa gcagttctca gcccaaagca tccaaggacc atcgatctgg agatcaggca
     1321 gcaagggtgt ctcacaggct cagagctctc accgtaaatg agggggctta accaggggca
     1381 caccaagatc ccctctggca gagggattct ccgggggtga ggcgaaagtg tgtccccact
     1441 ttgtcttctt ctggggtgcc ttttcagggt gaagacatag gggatggctg tgatgaatga
     1501 cctgtcttct ctaaccaggc tggaaggaga tggtaacgat ggcgcctctg gagcaggccg
     1561 tggctgctat tgtgtgcacc ttccaggaat attcagggcc ctgttggaga caagtaaagc
     1621 tctgccaggc agagcgcaag gagctgctag agaaggagct gcccacctgg accccgacag
     1681 agcttcggga atgtgaccac aataagttca tgagtgtcct ggacaccagc aaggatcgag
     1741 aggtggactt tgtggagtac acgtgcctgc ttgcctgcct ctgcgcctgc tgccatgagt
     1801 acttcaagaa ctgcgccctg ggcccccact gctcccagta atgggcgggg ctgccatcgg
     1861 ag
//
LOCUS       XM_032603654             530 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X5, mRNA.
ACCESSION   XM_032603654
VERSION     XM_032603654.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..530
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739310"
     CDS             198..509
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X2"
                     /protein_id="XP_032459545.1"
                     /db_xref="GeneID:116739310"
                     /translation="MVTMAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKEL
                     PTWTPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCS
                     Q"
     misc_feature    213..428
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(261..263,276..278,285..287,300..305,390..392,
                     396..398,402..404,408..410,414..416,423..425)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 agtcctctgg agtaggcgct ggctgtgatg gtcaccacct tccacaagta ctctggccaa
       61 gagggtgaca acttcaagct gagtaagggg gagatgaaga aacttctgca caaggagctg
      121 cccagctttg tggggggtga agacataggg gatggctgtg atgaatgacc tgtcttctct
      181 aaccaggctg gaaggagatg gtaacgatgg cgcctctgga gcaggccgtg gctgctattg
      241 tgtgcacctt ccaggaatat tcagggccct gttggagaca agtaaagctc tgccaggcag
      301 agcgcaagga gctgctagag aaggagctgc ccacctggac cccgacagag cttcgggaat
      361 gtgaccacaa taagttcatg agtgtcctgg acaccagcaa ggatcgagag gtggactttg
      421 tggagtacac gtgcctgctt gcctgcctct gcgcctgctg ccatgagtac ttcaagaact
      481 gcgccctggg cccccactgc tcccagtaat gggcggggct gccatcggag
//
LOCUS       XM_032603663            1274 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X6, mRNA.
ACCESSION   XM_032603663
VERSION     XM_032603663.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1274
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739310"
     CDS             951..1253
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X3"
                     /protein_id="XP_032459554.1"
                     /db_xref="GeneID:116739310"
                     /translation="MAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKELPTW
                     TPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCSQ"
     misc_feature    957..1172
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(1005..1007,1020..1022,1029..1031,1044..1049,
                     1134..1136,1140..1142,1146..1148,1152..1154,1158..1160,
                     1167..1169)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 ctgagtaagg gggagatgaa gaaacttctg cacaaggagc tgcccagctt tgtggggaag
       61 aaggtggatg aggagggccc gaagaggatg atgggtgatc tggataagaa cagagaccag
      121 gaggtggact tccagggggt gaagacatag gggatggctg tgatgaatga cctgtcttct
      181 ctaaccaggc tggaaggaga tgggctcctc cagctgaaac gccaacacct gtggtgggtg
      241 ccggctgctt aggtcctgtc ctgggcgtcc ggcagctcca gataaggcac ctgagaccca
      301 gacagggtaa atggctcatc ttccgctgca cggctggtca gaggcataga gtgtcgcggc
      361 agattttcct ttggttgcag cttccctgag ttcagcgcag gagggatggt gatggggtcg
      421 tggtgaggcg gtggaggttc ttctgagacc tgactctccc tgagaaggtc cagcttcgcc
      481 aagggcctga ggccgggagc atggggcaag ggtgctcccc tgtgcaggag ctctggggtc
      541 ctgagggcga tgaggcttct agggccaggg ggctgtgtct cagagggtgc tacagagctg
      601 gactgggcgt ccgatgagaa aagctggaga gaatcaggga gtcctcaggg acccccagtg
      661 tgcggggtgc aggtaaaggg tgggcacctc tccctgagga gtttgcagtg aggttgggca
      721 aatgaggcct ctgtccagaa ataggggggc agtcgggaaa taaatgagga ggggctggtg
      781 tagtcaggga gggctgctca gaggaggggg agcttgtggg gtgggaaggc tgcaggggat
      841 taagtcaggt ctgggtgcat ttcctggggc gcatggaggg cagagttgag cagggggtct
      901 gactcggcct ctgccgtgag tcacaccctt gttcttctgt gacagtaacg atggcgcctc
      961 tggagcaggc cgtggctgct attgtgtgca ccttccagga atattcaggg ccctgttgga
     1021 gacaagtaaa gctctgccag gcagagcgca aggagctgct agagaaggag ctgcccacct
     1081 ggaccccgac agagcttcgg gaatgtgacc acaataagtt catgagtgtc ctggacacca
     1141 gcaaggatcg agaggtggac tttgtggagt acacgtgcct gcttgcctgc ctctgcgcct
     1201 gctgccatga gtacttcaag aactgcgccc tgggccccca ctgctcccag taatgggcgg
     1261 ggctgccatc ggag
//
LOCUS       XM_032603672             610 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X7, mRNA.
ACCESSION   XM_032603672
VERSION     XM_032603672.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..610
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739310"
     CDS             287..589
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X3"
                     /protein_id="XP_032459563.1"
                     /db_xref="GeneID:116739310"
                     /translation="MAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKELPTW
                     TPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCSQ"
     misc_feature    293..508
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(341..343,356..358,365..367,380..385,470..472,
                     476..478,482..484,488..490,494..496,503..505)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 ctgagtaagg gggagatgaa gaaacttctg cacaaggagc tgcccagctt tgtggggaag
       61 aaggtggatg aggagggccc gaagaggatg atgggtgatc tggataagaa cagagaccag
      121 gaggtggact tccagggggt gaagacatag gggatggctg tgatgaatga cctgtcttct
      181 ctaaccaggc tggaaggaga tgggctcctc cagctgaaac gccaacacct gtggtgggtg
      241 ccggctgctt aggtcctgtc ctgggcgtcc ggcagctcca gtaacgatgg cgcctctgga
      301 gcaggccgtg gctgctattg tgtgcacctt ccaggaatat tcagggccct gttggagaca
      361 agtaaagctc tgccaggcag agcgcaagga gctgctagag aaggagctgc ccacctggac
      421 cccgacagag cttcgggaat gtgaccacaa taagttcatg agtgtcctgg acaccagcaa
      481 ggatcgagag gtggactttg tggagtacac gtgcctgctt gcctgcctct gcgcctgctg
      541 ccatgagtac ttcaagaact gcgccctggg cccccactgc tcccagtaat gggcggggct
      601 gccatcggag
//
LOCUS       XM_032603682             456 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X8, mRNA.
ACCESSION   XM_032603682
VERSION     XM_032603682.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..456
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739310"
     CDS             133..435
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X3"
                     /protein_id="XP_032459573.1"
                     /db_xref="GeneID:116739310"
                     /translation="MAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKELPTW
                     TPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCSQ"
     misc_feature    139..354
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(187..189,202..204,211..213,226..231,316..318,
                     322..324,328..330,334..336,340..342,349..351)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 gggagatgaa gaaacttctg cacaaggagc tgcccagctt tgtggggaag aaggtggatg
       61 aggagggccc gaagaggatg atgggtgatc tggataagaa cagagaccag gaggtggact
      121 tccagggtaa cgatggcgcc tctggagcag gccgtggctg ctattgtgtg caccttccag
      181 gaatattcag ggccctgttg gagacaagta aagctctgcc aggcagagcg caaggagctg
      241 ctagagaagg agctgcccac ctggaccccg acagagcttc gggaatgtga ccacaataag
      301 ttcatgagtg tcctggacac cagcaaggat cgagaggtgg actttgtgga gtacacgtgc
      361 ctgcttgcct gcctctgcgc ctgctgccat gagtacttca agaactgcgc cctgggcccc
      421 cactgctccc agtaatgggc ggggctgcca tcggag
//
LOCUS       XM_032603689             418 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X9, mRNA.
ACCESSION   XM_032603689
VERSION     XM_032603689.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..418
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739310"
     CDS             95..397
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X3"
                     /protein_id="XP_032459580.1"
                     /db_xref="GeneID:116739310"
                     /translation="MAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKELPTW
                     TPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCSQ"
     misc_feature    101..316
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(149..151,164..166,173..175,188..193,278..280,
                     284..286,290..292,296..298,302..304,311..313)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 agtactctgg ccaagagggt gacaacttca agctgagtaa gggggagatg aagaaacttc
       61 tgcacaagga gctgcccagc tttgtggggt aacgatggcg cctctggagc aggccgtggc
      121 tgctattgtg tgcaccttcc aggaatattc agggccctgt tggagacaag taaagctctg
      181 ccaggcagag cgcaaggagc tgctagagaa ggagctgccc acctggaccc cgacagagct
      241 tcgggaatgt gaccacaata agttcatgag tgtcctggac accagcaagg atcgagaggt
      301 ggactttgtg gagtacacgt gcctgcttgc ctgcctctgc gcctgctgcc atgagtactt
      361 caagaactgc gccctgggcc cccactgctc ccagtaatgg gcggggctgc catcggag
//
LOCUS       XM_032603698             509 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X10, mRNA.
ACCESSION   XM_032603698
VERSION     XM_032603698.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..509
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739310"
     CDS             186..488
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X3"
                     /protein_id="XP_032459589.1"
                     /db_xref="GeneID:116739310"
                     /translation="MAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKELPTW
                     TPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCSQ"
     misc_feature    192..407
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(240..242,255..257,264..266,279..284,369..371,
                     375..377,381..383,387..389,393..395,402..404)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 atctgggcct ggaaccacgg gaggcccgag ttttctcctc tcccttcaac cctcccgggg
       61 cgtccttaca ccccacagac cgctgctcac cccagctgac tataacagag ccatctccac
      121 ctctcactgc cttcctgcct cctgccagac cctcctccta cccaaagggg gcttttccag
      181 taacgatggc gcctctggag caggccgtgg ctgctattgt gtgcaccttc caggaatatt
      241 cagggccctg ttggagacaa gtaaagctct gccaggcaga gcgcaaggag ctgctagaga
      301 aggagctgcc cacctggacc ccgacagagc ttcgggaatg tgaccacaat aagttcatga
      361 gtgtcctgga caccagcaag gatcgagagg tggactttgt ggagtacacg tgcctgcttg
      421 cctgcctctg cgcctgctgc catgagtact tcaagaactg cgccctgggc ccccactgct
      481 cccagtaatg ggcggggctg ccatcggag
//
LOCUS       XM_032603704             423 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A3 (S100A3),
            transcript variant X11, mRNA.
ACCESSION   XM_032603704
VERSION     XM_032603704.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..423
                     /gene="S100A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739310"
     CDS             100..402
                     /gene="S100A3"
                     /codon_start=1
                     /product="protein S100-A3 isoform X3"
                     /protein_id="XP_032459595.1"
                     /db_xref="GeneID:116739310"
                     /translation="MAPLEQAVAAIVCTFQEYSGPCWRQVKLCQAERKELLEKELPTW
                     TPTELRECDHNKFMSVLDTSKDREVDFVEYTCLLACLCACCHEYFKNCALGPHCSQ"
     misc_feature    106..321
                     /gene="S100A3"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(154..156,169..171,178..180,193..198,283..285,
                     289..291,295..297,301..303,307..309,316..318)
                     /gene="S100A3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 ctctaacaga atggggtacc cctctgcaga gccttctgtc tcaagagccc cagaggtcag
       61 ggggatggcc tcagggagag cagattacag attgtaacga tggcgcctct ggagcaggcc
      121 gtggctgcta ttgtgtgcac cttccaggaa tattcagggc cctgttggag acaagtaaag
      181 ctctgccagg cagagcgcaa ggagctgcta gagaaggagc tgcccacctg gaccccgaca
      241 gagcttcggg aatgtgacca caataagttc atgagtgtcc tggacaccag caaggatcga
      301 gaggtggact ttgtggagta cacgtgcctg cttgcctgcc tctgcgcctg ctgccatgag
      361 tacttcaaga actgcgccct gggcccccac tgctcccagt aatgggcggg gctgccatcg
      421 gag
//
LOCUS       XM_032603715             517 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein S100-A4 (LOC116739354),
            transcript variant X1, mRNA.
ACCESSION   XM_032603715
VERSION     XM_032603715.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..517
                     /gene="LOC116739354"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739354"
     CDS             78..383
                     /gene="LOC116739354"
                     /codon_start=1
                     /product="protein S100-A4"
                     /protein_id="XP_032459606.1"
                     /db_xref="GeneID:116739354"
                     /translation="MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPS
                     FLGKKTDEAAFQKLMSNLDSNKDNEVDFQEYCVFLSCIAMMCNEFFEGCPDKQPRKK"
     misc_feature    87..347
                     /gene="LOC116739354"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(87..137,153..161,186..191,195..203,285..296,
                     300..305,309..320,324..347)
                     /gene="LOC116739354"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238131"
     misc_feature    order(135..137,150..152,159..161,174..179,264..266,
                     270..272,276..278,282..284,288..290,297..299)
                     /gene="LOC116739354"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 gggcttcccc cactcttcct ctctctccaa ccctctctct tcggcacttc tctcttggcc
       61 tggtcctgac tgccggcatg gcgtgccccc tggagaaggc cctcgatgtg atggtgtcca
      121 ccttccacaa gtactcaggc aaggagggtg acaagttcaa gctcaacaag tctgagctga
      181 aggagctgtt gacccgggag ctgcccagct tcttggggaa aaagacagat gaagctgcat
      241 tccagaagct gatgagcaac ctagacagca acaaggacaa cgaggtggac ttccaggagt
      301 actgcgtctt cctgtcctgc atcgccatga tgtgcaacga gttcttcgaa ggctgccccg
      361 ataagcaacc ccggaagaaa tgaagtctcc tcagatgtgc ggggcggggc ctgccagctg
      421 gggtcttccc tgttggcggt gggcacagcg cctcacactg gtttctccag atgtgagcac
      481 gatactaaac aagttcaata aagattcttg aaagcta
//
LOCUS       XM_032603724             700 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein S100-A4 (LOC116739354),
            transcript variant X2, mRNA.
ACCESSION   XM_032603724
VERSION     XM_032603724.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..700
                     /gene="LOC116739354"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739354"
     CDS             261..566
                     /gene="LOC116739354"
                     /codon_start=1
                     /product="protein S100-A4"
                     /protein_id="XP_032459615.1"
                     /db_xref="GeneID:116739354"
                     /translation="MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPS
                     FLGKKTDEAAFQKLMSNLDSNKDNEVDFQEYCVFLSCIAMMCNEFFEGCPDKQPRKK"
     misc_feature    270..530
                     /gene="LOC116739354"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(270..320,336..344,369..374,378..386,468..479,
                     483..488,492..503,507..530)
                     /gene="LOC116739354"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238131"
     misc_feature    order(318..320,333..335,342..344,357..362,447..449,
                     453..455,459..461,465..467,471..473,480..482)
                     /gene="LOC116739354"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 tcctgggcat gtcagctctc ccccctcccc cctctcccct cctttgtcct ctccctctag
       61 aatctcccag gttggcccct ggtatgttaa ccccttttac ccatgagtct aggagacgtg
      121 aggggacctt ccccgggatc acagccagtg acctgtagaa cagccagccg ctgactcccc
      181 actgtggccc atgatggacg aaggctgtca aggcccagca gagcgtgtga gggaaggaga
      241 ccacggtcct gactgccggc atggcgtgcc ccctggagaa ggccctcgat gtgatggtgt
      301 ccaccttcca caagtactca ggcaaggagg gtgacaagtt caagctcaac aagtctgagc
      361 tgaaggagct gttgacccgg gagctgccca gcttcttggg gaaaaagaca gatgaagctg
      421 cattccagaa gctgatgagc aacctagaca gcaacaagga caacgaggtg gacttccagg
      481 agtactgcgt cttcctgtcc tgcatcgcca tgatgtgcaa cgagttcttc gaaggctgcc
      541 ccgataagca accccggaag aaatgaagtc tcctcagatg tgcggggcgg ggcctgccag
      601 ctggggtctt ccctgttggc ggtgggcaca gcgcctcaca ctggtttctc cagatgtgag
      661 cacgatacta aacaagttca ataaagattc ttgaaagcta
//
LOCUS       XM_032603733             408 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A2 (S100A2),
            mRNA.
ACCESSION   XM_032603733
VERSION     XM_032603733.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..408
                     /gene="S100A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 Proteins, and 90% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739363"
     CDS             1..294
                     /gene="S100A2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:19..21,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: protein S100-A2"
                     /protein_id="XP_032459624.1"
                     /db_xref="GeneID:116739363"
                     /translation="MSSPLEXALAVMVTTFHKYSGQEGDNFKLSKGEMKKLLHKELPS
                     FVGKKVDEEGPKRMMGDLDKNRDQEVDFQGYALSLALDAIMCNDFFQGFPAQS"
     misc_feature    7..270
                     /gene="S100A2"
                     /note="S-100 domain, which represents the largest family
                     within the superfamily of proteins carrying the Ca-binding
                     EF-hand motif. Note that this S-100 hierarchy contains
                     only S-100 EF-hand domains, other EF-hands have been
                     modeled separately. S100 proteins are...; Region: S-100;
                     cd00213"
                     /db_xref="CDD:238131"
     misc_feature    order(7..60,76..84,109..114,118..126,208..219,223..228,
                     232..243,247..270)
                     /gene="S100A2"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238131"
     misc_feature    order(58..60,73..75,82..84,97..102,187..189,193..195,
                     199..201,205..207,211..213,220..222)
                     /gene="S100A2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238131"
ORIGIN      
        1 atgtccagtc ctctggagta ggcgctggct gtgatggtca ccaccttcca caagtactct
       61 ggccaagagg gtgacaactt caagctgagt aagggggaga tgaagaaact tctgcacaag
      121 gagctgccca gctttgtggg gaagaaggtg gatgaggagg gcccgaagag gatgatgggt
      181 gatctggata agaacagaga ccaggaggtg gacttccagg ggtatgctct ctccctcgcc
      241 ctcgacgcta tcatgtgcaa cgacttcttc cagggcttcc cagcacagtc ctgatgtaga
      301 gctcgtggtt ccctccatgg gtttcttggg cccaggagga ctctctacct tttttagttt
      361 tatactcagt aaactctttt gcttgttgac aatattttaa ttgctcag
//
LOCUS       XM_032603735            1211 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein L9
            (MRPL9), mRNA.
ACCESSION   XM_032603735
VERSION     XM_032603735.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1211
                     /gene="MRPL9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739378"
     CDS             29..814
                     /gene="MRPL9"
                     /codon_start=1
                     /product="39S ribosomal protein L9, mitochondrial"
                     /protein_id="XP_032459626.1"
                     /db_xref="GeneID:116739378"
                     /translation="MAAAPGRALLRAGTERLVRGGVWELLRPRLEGGTSGSERDFSLS
                     HSRGTVIVERWWKVPLAGEGRKPRLHRRHRVYKLAEDTKHRPKDNLELILTQSVEELG
                     VRGDLVSVKKSVGRNRLLPQGLAVYASPENRKLFEEEKLLRQEGKLEKIQTKAGETTV
                     KFLRRCHLQVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPITQRGEYWCE
                     VTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAASSTGSQTI"
     misc_feature    296..691
                     /gene="MRPL9"
                     /note="ribosomal protein L9; Region: L9; TIGR00158"
                     /db_xref="CDD:129262"
     misc_feature    299..436
                     /gene="MRPL9"
                     /note="Ribosomal protein L9, N-terminal domain; Region:
                     Ribosomal_L9_N; pfam01281"
                     /db_xref="CDD:460146"
ORIGIN      
        1 ttctacgcct ccatccgtgc ccgagaacat ggcggcggcc ccgggtagag ctctgctgcg
       61 ggcgggcact gagcggctgg tgcgaggagg ggtttgggag ctcctccggc cgcgacttga
      121 agggggcacc tccggctcgg agcgcgactt cagcctgtct cacagtcggg gcacggtcat
      181 tgtggagcgc tggtggaagg tgccgctagc gggagagggc cggaagccgc gcctgcaccg
      241 gcggcaccgc gtctacaagc tggcggagga cacgaaacac cggcccaaag acaacctgga
      301 gctcatcctc acgcagtcgg tggaggaact tggagtccga ggtgacctgg tctcagtgaa
      361 aaaatctgta ggccgtaatc gactacttcc tcaaggactg gctgtatatg catctcctga
      421 aaacaggaag ctgtttgaag aggagaaatt gctgagacag gaaggaaaat tagagaagat
      481 tcagaccaag gcaggtgaga cgacagtgaa atttctgaga agatgtcacc tgcaggtagg
      541 gatgaagaac aatgtcaaat gggagctaaa ccctgaaata gttgcccgcc acttcctcag
      601 aaatcttggt gttgtggttg ccccacatgc attaaagtta ccagaagagc ctatcacaca
      661 gaggggcgag tactggtgtg aggtgacggt aaatgggctt gacactgtga gggtacctat
      721 gtctgtggtg aactttgaga ggcccaagac caaaagatat aagtactggt tagcccagca
      781 agctgccagc tccacaggct cccagaccat ctgaacctgt tctacctcga aagcagcaaa
      841 gcagaatcag aggagaggtg gagcgaagat gggccagcac cgtgatatca ctcccagctc
      901 tgaccaaaca tggaatttta gaaagcacgt ggagacagcg acagcagact agactgaata
      961 tacgttgaat tgtccatatt tgccatcttc agcagttatc acatctagcg ttattggggc
     1021 aggcctaatc cagaagtacc aggctgtaga tatgataagc taaatattaa tagaccaaaa
     1081 gagtctagat ctatttagcc tcatcctaca ttggaattta ttggaataaa tgatagagat
     1141 agctcattct catcatccaa actaaacgtt tgtatctgaa aaaaaaaaat aaagaggttg
     1201 tgttcttttt a
//
LOCUS       XM_032603736             678 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ornithine decarboxylase antizyme 3
            (OAZ3), mRNA.
ACCESSION   XM_032603736
VERSION     XM_032603736.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                VOSU01000011.1     111052319-111052350
            33-93               VOSU01000011.1     111056066-111056126
            94-168              VOSU01000011.1     111056128-111056202
            169-344             VOSU01000011.1     111056952-111057127
            345-430             VOSU01000011.1     111057618-111057703
            431-678             VOSU01000011.1     111058361-111058608
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..678
                     /gene="OAZ3"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 Proteins, and 67% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739394"
     CDS             1..573
                     /gene="OAZ3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: ornithine decarboxylase
                     antizyme 3"
                     /protein_id="XP_032459627.1"
                     /db_xref="GeneID:116739394"
                     /translation="MTVPWRPGERGITYKEQEDLTLRPCCCLQCSESLVGLHRGRSSE
                     QGDQDQLKELYSAGNLTVLATDPLLHQNPVQLDFHFRLTPQTSAHWHGLLCDHRLFLD
                     IPYRALDQGSRESLTAILEYVEEKTNVDSVLVNFQNNRNDRGALLRAFSYMGFEVVRP
                     DHPALPPWNNVIFMVYPLERDLGHLPSETP"
     misc_feature    283..534
                     /gene="OAZ3"
                     /note="Ornithine decarboxylase antizyme; Region: ODC_AZ;
                     pfam02100"
                     /db_xref="CDD:460445"
ORIGIN      
        1 atgaccgtgc cctggcggcc gggggagcga ggcatcactt ataaggaaca ggaggacttg
       61 acactccgac cctgttgctg tcttcagtgc tccgagtccc tagtaggcct tcacaggggc
      121 agaagcagcg agcagggtga tcaagaccag cttaaagaac tgtattcggc tgggaacctg
      181 acggtgctgg ctactgaccc cctgcttcac cagaacccgg tgcagttaga cttccacttc
      241 cgcctcaccc cccagacctc tgcccattgg cacggccttc tttgtgacca cagactcttc
      301 ctagatatcc cataccgggc cttggatcaa ggcagccggg aaagtttgac tgcaatactg
      361 gagtatgtgg aggagaagac caatgtggat tctgtgcttg taaacttcca aaacaaccgg
      421 aatgacagag gtgccctgct acgggccttc agctacatgg gctttgaagt ggtcagacca
      481 gatcacccgg cccttcctcc ctggaacaat gtcatcttta tggtgtatcc ccttgaaagg
      541 gacctaggcc acctgcccag tgaaactccc tgaacatgtt tattcttact ctgtgaaggg
      601 ctcggagcct tgataaatga gaaccagggg cccaggatgt gattcagaac accttccatc
      661 ttaggaataa agggtagt
//
LOCUS       XM_032603737            6925 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulation of nuclear pre-mRNA domain
            containing 2 (RPRD2), transcript variant X1, mRNA.
ACCESSION   XM_032603737
VERSION     XM_032603737.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6925
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6925
                     /gene="RPRD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739410"
     CDS             1..4386
                     /gene="RPRD2"
                     /codon_start=1
                     /product="regulation of nuclear pre-mRNA domain-containing
                     protein 2 isoform X1"
                     /protein_id="XP_032459628.1"
                     /db_xref="GeneID:116739410"
                     /translation="MAAGGGGGGSKASSSSASSAGALESSLDRKFQSVTNTMESIQGL
                     SSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD
                     VLPEAAALVKDPSVSKSIERIFKIWEDRNVYPEEMIMALREALSTTFKTQKQLKENLN
                     KQPNKQWKKSQTSTNPKAALKSKIVAEFRSQALIEELLLYKRSEDQIELKEKQLSTMR
                     VDVCSTETLKCLKDKTGGKKFSKEFEEASAKLEEFVNGLDKQVKNGPSLTEALENAGI
                     FYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPTGS
                     ESPFQGMGGEESQSPTMESEKSTTPEPATDNRDVEDMELSDVEDDGSKIIVEDRKEKP
                     VEKSAVSTAVPTKPTESISKASSCTPVPVTMTATPPPPKPVNTSLLSPTPALALPNLA
                     NVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPASPSNLTSGLKTPAPATTTSHNPL
                     ANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVTGNPVPSSEAASQSTSASP
                     ANTTVSSIKGRNLPSNTQSFIPKSFSYSPNSSTSEVSSTSASKASIGQSPGLPSSTFK
                     LPSNTLGFTGTHSTSPAAPPTEVAMCQSSEISKPKLESESTSPSLEMKIHNFLKGNPG
                     FSGLNLNIPILSSLGSSAPAESHPSDFQRGPTSTSIDNIDGTPVRDERSGTPTQDEMM
                     DKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGREESYPRELSNSVSTYRPFGLGSE
                     SPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMMNLEKKPAK
                     SILKSSKLSDTTEYQPILSSYSHRGQEFGVKSAFPPSVRALLDSSENCDRLSSSPGLF
                     GAFSIRGNEPGSDRSPSPSKNDSFFTPDSNHNNLSQSTTGHLSLPQKQYPDSPHPVPH
                     RSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFGQA
                     PSKGTSSDGVSLSNLSQPSLTASDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
                     LGYHNASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSA
                     SELASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGT
                     PFQREPVGPSSAPPAPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPGEH
                     SGVPFPTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPTPPLAEHGVAGA
                     VAVFPKDHSSLLQGTLADHFGVLPGPRDHGGPTQRDLNGPGLNRVRESLSLPSLSLEH
                     LGPAHGGGGGGGSSNSSGPPLGPSHRDAISRSGMILRSPRPDFRPREPFLSRDPFHSL
                     KRPRPPFARGPPFFAPKRPFFPPRY"
     misc_feature    67..438
                     /gene="RPRD2"
                     /note="CID (CTD-Interacting Domain) of Regulation of
                     nuclear pre-mRNA domain-containing protein 2; Region:
                     CID_RPRD2; cd17001"
                     /db_xref="CDD:340798"
     misc_feature    order(106..114,121..123,235..237,244..249,256..261,
                     364..366,376..378)
                     /gene="RPRD2"
                     /note="CTD binding site [polypeptide binding]; other site"
                     /db_xref="CDD:340798"
     misc_feature    <424..>954
                     /gene="RPRD2"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
     misc_feature    <940..2004
                     /gene="RPRD2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 atggcggccg gcggcggcgg aggcggcagt aaggcctcct cctcgtcggc ctcttcggca
       61 ggggctctgg agtcctcgtt ggatcgaaaa ttccagtcgg taactaacac catggaatct
      121 attcaaggct tgtcatcttg gtgtatagag aacaagaaac accacactac tatcgtctac
      181 cattggatga agtggctccg gagatctgcc tatccccacc gtttgaatct cttttacctt
      241 gccaatgatg tcatacagaa ctgtaaaagg aaaaacgcaa tcatattccg tgaatcgttt
      301 gctgatgtac ttccagaagc agctgctcta gtgaaggatc catctgtctc taagtctata
      361 gaacgaatct ttaaaatctg ggaagataga aatgtatacc cagaagaaat gattatggcg
      421 ttaagagaag ctttgagtac cactttcaaa actcagaagc agctgaaaga aaatctgaac
      481 aaacaaccga ataagcagtg gaagaaatca caaacatcca cgaatccaaa agctgctctc
      541 aagtctaaga tagttgctga atttcgatct caggccctca ttgaagagct gttgctgtac
      601 aagcgctcag aagatcagat agaattgaaa gaaaaacagc tgtcaactat gagggtggat
      661 gtgtgcagca cagaaactct caaatgctta aaagataaga caggtgggaa gaaattctcc
      721 aaagaatttg aagaggcaag tgccaagctg gaggaatttg tgaatggact agataagcag
      781 gtgaaaaatg ggccctcact aacagaagca cttgaaaatg ctggaatttt ctatgaagca
      841 cagtacaaag aagtaaaagt ggtggccaat gcatataaaa cctttgctaa tcgagtgaac
      901 aatttaaaga aaaagctgga tcaattgaag tcaacccttc ctgatcctga ggaatcacca
      961 gtcccttccc caagcatgga tgctccctct ccaactggct ctgagtctcc ttttcaagga
     1021 atgggaggtg aggagtccca gtcaccaacc atggagagtg agaaatctac cacacctgag
     1081 cctgcaacag ataatcgtga tgtggaagac atggaactct cagatgtgga agatgatggg
     1141 tcaaaaatca ttgtagaaga caggaaggaa aaacctgtgg agaagtcagc tgtatccact
     1201 gctgtaccta caaagccaac agaaagtatc tcaaaggcct cttcatgtac tccagtgcct
     1261 gtgaccatga cagcaacccc acctcctcca aagcctgtga atacttctct tctctcccct
     1321 actccagcac tggctttgcc aaacctggct aatgtggatc tggcaaagat cagttccatc
     1381 cttagcagcc tgacatcagt catgaaaaat actggggtca gtcctgcatc aagaccttct
     1441 ccaggaactc ctgcaagtcc cagcaacctc accagtggtc tgaaaacacc tgcacctgcc
     1501 acgacaacat ctcataaccc tctagcaaat atcctctcga aggtggagat caccccagag
     1561 agcattctgt ctgctctttc caaaacccag acacagtcag cccctgcact gcaaggcctg
     1621 tcatctttac ttcagagtgt tactgggaac ccagttccat ccagcgaagc tgcatcccag
     1681 agcacttcgg cttcccctgc caacaccaca gtctctagca taaaaggaag aaatctaccc
     1741 tccaataccc aatcctttat tccgaaaagc tttagctatt cccctaattc atcaacttct
     1801 gaagtctctt caacttcagc cagcaaggcc tcaattgggc aaagcccagg gctccccagc
     1861 tctactttca agctaccatc caacactctg gggtttacag gtacccacag tactagccct
     1921 gctgccccac ctactgaagt tgccatgtgc caatcttcag agatctccaa gccaaagctg
     1981 gagtcagagt ccacctcccc aagcctggaa atgaagatcc acaacttctt aaaaggtaat
     2041 cctggtttca gtggcttaaa cttaaacatc ccaatcctga gcagtttggg atccagtgcc
     2101 ccagcagaaa gccatccctc agacttccag cgtggcccta ctagcacatc aatcgacaac
     2161 attgatggaa cccctgtgcg ggatgaacgg agtgggacac ccacccagga tgagatgatg
     2221 gacaagccca catccagcag tgtagatacc atgtccctgc tttctaagat cattagccct
     2281 ggttcctcaa cacccagcag cacaagatca ccaccccctg ggagagagga aagctatcct
     2341 cgagagctct ccaattctgt atctacgtat cgaccctttg gcctgggcag tgaatcaccc
     2401 tataagcagc cttctgatgg aatggagaga ccatcttccc tgatggactc ttcacaggag
     2461 aaattctatc cagatacttc tttccaggaa gatgaagatt accgagattt tgagtattca
     2521 gggcctccac cctctgccat gatgaaccta gagaagaaac cagccaaatc tatcctgaaa
     2581 tcaagcaagc tttctgatac caccgagtac cagcccatct tgtccagtta cagccacagg
     2641 ggccaagaat ttggggtaaa gtctgccttc cctccatctg taagggccct cctggactct
     2701 agtgagaact gtgaccgtct ctcgtcttcc cctgggcttt ttggtgcctt cagcataaga
     2761 gggaatgaac ctgggtctga ccggtcacca tcaccgagta agaatgattc atttttcacc
     2821 cctgactcca accacaataa cttgtctcag tctaccactg ggcatctcag tttgccacag
     2881 aagcagtacc cagactctcc tcacccagtt ccacatcgtt cccttttctc tccgcagaat
     2941 acccttgctg ctcccacggg ccacccaccc acgtcaggcg tggagaaagt cctggcctcc
     3001 accatttcca ccacatcgac gattgagttt aagaatatgc ttaaaaatgc ctcgcgaaag
     3061 ccctcagatg ataaacattt tggccaggcc cccagcaagg gcacttcaag tgatggtgtc
     3121 agtctctcaa acctctccca gcccagcttg acagccagtg atcagcagca gcaagaagag
     3181 cactaccgca tagagacccg agtctcctcc tcctgcttag acttgcctga tagtacggaa
     3241 gaaaaggggg cccctataga gaccttgggt tatcataatg catccaatag gaggatgtca
     3301 ggggagccaa tacagactgt agagtccatc cgagttcctg ggaagggaaa tagaggacat
     3361 gggcgtgagg cttcaagggt gggttggttt gatctgagca cctcaggcag ctcttttgac
     3421 aatggcccct caagtgcctc tgagttggca tcccttgggg gtgggggcag cggaggcctc
     3481 actggcttta aaacagcacc atacaaagaa cgagcacccc aatttcagga aagtgtcggc
     3541 agctttcgtt ccaacagttt caactcaaca tttgagcatc atctcccccc gtccccattg
     3601 gaacatggga cacccttcca gagagagcca gtggggccat catctgcccc acctgcccct
     3661 cctaaggatc atggtggtat cttctctcga gatgcaccca ctcatctacc ctctgtggat
     3721 ctttcgaacc ccttcacaaa ggaggcagcc ctggcccatg ctgccccacc tcctcctgga
     3781 gagcacagcg gagttccttt ccccacccca ccccctcctc cgccccctgg ggaacatagc
     3841 agcagtggcg ggagtggcgt ccctttctcc actcctcctc ctcctccacc tcctgttgac
     3901 cactctgggg ttgtaccctt cccgacccca ccactggcag agcacggagt ggcgggcgct
     3961 gtggcagtat ttcccaagga ccatagttcc ctccttcagg ggaccctggc tgatcatttt
     4021 ggggtgctcc caggacccag ggaccatggg ggccccaccc aacgggacct caacggccct
     4081 ggccttaacc gtgtacgcga gagcctgagc ctaccctccc tttctctgga gcacttgggc
     4141 ccagcccatg gaggaggagg tgggggaggc agcagcaaca gcagcggccc ccccttgggt
     4201 ccctcacaca gagacgccat cagccggagt ggtatgatct tgcggagtcc ccggccagac
     4261 ttccggccta gggaaccttt tctcagcaga gacccttttc acagtttaaa gagacccagg
     4321 ccacctttcg ctaggggccc tccgttcttt gcaccaaaac gcccattctt ccctcccagg
     4381 tactgatgga aactaaggga aaggcatttt gaacagtcta gagagaattg gaagtaggag
     4441 tttggtttat tattcttgtt tttgtttgtt ttccctcctt tgatttattt tttctttttt
     4501 ttattatgac agaggacctc ccttccaaat taaaaagtcc catgtgcata tgcccacatt
     4561 tcactattcc atccagtcct gcctcccact gcacttatac ccaccttctc caacttgttt
     4621 gtattttaag ggggtggggg gcaaagaaac acaaccaaag ccacttcatt tggctggggg
     4681 tttgaggggt ggggaggaaa acagctcgta tcttacccca tctatggaag agtattatta
     4741 catttgaaat aaaacttcca tcagtacaga taataacatg tgcaatgttg ggatgttatt
     4801 ttgggcttgg catgtcaaaa gtagtcagtg aaggattcct gtccccttct ctctccagct
     4861 cctttactgc tgtaaccagt gtggctctct tccctgtatg ctctgtggcc tgctgacagc
     4921 caggagatgt tgcaggggag aaatgtggga gacctgggac ctgtcaagtt gtattgttct
     4981 gctttgtttt gtttttaaag gcatgttgca gttgagttct ttacctctct cctaaaatct
     5041 aaagcttctt tttttttcct cttctaaagt actatcaggc agtaactttg aggagatacg
     5101 gacctcattt tatcctagta aaaaattttc ctctttttac ttggagtgaa agaaaggggg
     5161 ctggatataa tttaaaggtt aaaataagga gtagctacaa tatagagagc tagagaaagg
     5221 aactgttaaa tggtgtgttg tgacctgccc atctgtcata aacaaggaaa catttctgag
     5281 gtagtttcac acatcttgca ccaacctctt tcttcctgct tttctttctt gactatttcc
     5341 tccctcagtt ttcatttctg ctttagccag agagagtcac tacagttgac aattgatatg
     5401 aaggtgtaac tgaaatgtta tcaaatatta tccctgtatt ttttaataag tacacatttt
     5461 taccatggtg cctccctaac gtaagtggca tttgttggta gttttcagca aaagttaact
     5521 acaagggaaa gggaaatatt tgtctttatc tttcttttcc ccttgaccta gtcctgtatt
     5581 cacccctctt cttggtattt cgaaggaaga agttcagtag catctttttt tatattatac
     5641 ctctttagat ctgtcttagt gacaagtggg tattcttata tgtatcttta cagagaaaca
     5701 ggaggacccg ataaattcaa atttacccca ctctacagat agcagcctgt cacatttcaa
     5761 ggctcaatcc ttaacctcac ctcccactct caatagaaaa taatgtttct gcccttagtc
     5821 attttccatg agaaaggaat gcttttcttg tccctgaact gaaaggcttc ttatttgtat
     5881 ttctacaact agtactggga aaaggacaat cactgcattc tgagtgttta tatctttata
     5941 tctagggaca ctgaaaggca aatgttgctt tactactctt ttttatttag tgtcttaccc
     6001 caaggtacac actggtcatc tccagccaga tgagtaaaaa aaaaggaaat tctagcaagt
     6061 ttcatatttt cttccaagtt agtataggag taactgtagg aagtatgggg attgctctgg
     6121 attcctccag cgaaatatta aagatgggag agagtgggca gtgtagtgac agaagatgat
     6181 tatttgtctc aaaagaaact tgcttttcag ataaagagcg tttcagataa agagcagctt
     6241 aaaccaggtg tgcatcatag tttgggagtt tttgtgtaat ttattccata ttatttattt
     6301 gggctcgtca tgttttcttt ggttaggatc ctgcaagtca ttcatcttcc taatgcgttt
     6361 ctggttttaa gccaactgtt ctttctttct ttgactttct caagcctctc tgtcctgtag
     6421 cttccccccg ccgccccccc gcaaaaatgc atgataccat gaccttgtaa gtggggtggg
     6481 gtatatagtg tagcaaagca aagaaacagt acagttatat tgagtcctaa gacatttgtt
     6541 tagagaaaag tataagagag tgtgaagatg ggggtggggg gagggaaagg gagagttctc
     6601 tctgactcga aactgggata ggttttttct tcctttgcag aaaagtggga tgttttttta
     6661 ttctagaata aaagaatgtg aattcttttt gctgctctcg tttaagctaa aagtagtgtt
     6721 tacttgaaaa ggctctctga ccatttgatt ttatcagaaa atgcggggtt gtcaagacag
     6781 tggcttcctg aatgttgggg cagggctatt gtcctcaaaa gcatgatagc taatccatga
     6841 aagaaggacc ttgttgtaca gtttaaaaga tggactttta agggttggtt tttttgtgga
     6901 gtgttttttt tttttttttt taagc
//
LOCUS       XM_032603738            7500 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulation of nuclear pre-mRNA domain
            containing 2 (RPRD2), transcript variant X2, mRNA.
ACCESSION   XM_032603738
VERSION     XM_032603738.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7500
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7500
                     /gene="RPRD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739410"
     CDS             579..4961
                     /gene="RPRD2"
                     /codon_start=1
                     /product="regulation of nuclear pre-mRNA domain-containing
                     protein 2 isoform X2"
                     /protein_id="XP_032459629.1"
                     /db_xref="GeneID:116739410"
                     /translation="MAAGGGGGGSKASSSSASSAGALESSLDRKFQSVTNTMESIQGL
                     SSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD
                     VLPEAAALVKDPSVSKSIERIFKIWEDRNVYPEEMIMALREALSTTFKTQKQLKENLN
                     KQPNKQWKKSQTSTNPKAALKSKIVAEFRSQALIEELLLYKRSEDQIELKEKQLSTMR
                     VDVCSTETLKCLKDKTGGKKFSKEFEEASAKLEEFVNGLDKQVKNGPSLTEALENAGI
                     FYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPTGS
                     ESPFQGMGGEESQSPTMESEKSTTPEPATDNRDVEDMELSDVEDDGSKIIEDRKEKPV
                     EKSAVSTAVPTKPTESISKASSCTPVPVTMTATPPPPKPVNTSLLSPTPALALPNLAN
                     VDLAKISSILSSLTSVMKNTGVSPASRPSPGTPASPSNLTSGLKTPAPATTTSHNPLA
                     NILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVTGNPVPSSEAASQSTSASPA
                     NTTVSSIKGRNLPSNTQSFIPKSFSYSPNSSTSEVSSTSASKASIGQSPGLPSSTFKL
                     PSNTLGFTGTHSTSPAAPPTEVAMCQSSEISKPKLESESTSPSLEMKIHNFLKGNPGF
                     SGLNLNIPILSSLGSSAPAESHPSDFQRGPTSTSIDNIDGTPVRDERSGTPTQDEMMD
                     KPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGREESYPRELSNSVSTYRPFGLGSES
                     PYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMMNLEKKPAKS
                     ILKSSKLSDTTEYQPILSSYSHRGQEFGVKSAFPPSVRALLDSSENCDRLSSSPGLFG
                     AFSIRGNEPGSDRSPSPSKNDSFFTPDSNHNNLSQSTTGHLSLPQKQYPDSPHPVPHR
                     SLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFGQAP
                     SKGTSSDGVSLSNLSQPSLTASDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIETL
                     GYHNASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSAS
                     ELASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTP
                     FQREPVGPSSAPPAPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPGEHS
                     GVPFPTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPTPPLAEHGVAGAV
                     AVFPKDHSSLLQGTLADHFGVLPGPRDHGGPTQRDLNGPGLNRVRESLSLPSLSLEHL
                     GPAHGGGGGGGSSNSSGPPLGPSHRDAISRSGMILRSPRPDFRPREPFLSRDPFHSLK
                     RPRPPFARGPPFFAPKRPFFPPRY"
     misc_feature    645..1016
                     /gene="RPRD2"
                     /note="CID (CTD-Interacting Domain) of Regulation of
                     nuclear pre-mRNA domain-containing protein 2; Region:
                     CID_RPRD2; cd17001"
                     /db_xref="CDD:340798"
     misc_feature    order(684..692,699..701,813..815,822..827,834..839,
                     942..944,954..956)
                     /gene="RPRD2"
                     /note="CTD binding site [polypeptide binding]; other site"
                     /db_xref="CDD:340798"
     misc_feature    <1002..>1532
                     /gene="RPRD2"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
     misc_feature    <1518..2579
                     /gene="RPRD2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 ggccaagcag cgcgtgcgcg atagtgttgc tgtccctttg ctgctgttgc gttgcaaaaa
       61 aaatcctgac taggtagcct tgggcctttc tgtgctagag gatctaaagg agagagaaag
      121 atttctgcaa ctgacggggc agtcgggtag tattaacttt aagatattca tgcccgctct
      181 tagaggagtg tgggggaacg gccttaagcg ttgagagccg aagagtataa aaccattaat
      241 ttccgggcca ggcgtttaga aaggctttgc aggacctgtt ttctgcgcaa ttcttccgtg
      301 attactgact ggtttaaaca caatcccttg aacaattacg ataaaccttc gaaatccgca
      361 gcccctcttt gcagcgtgta ggagccgcca gcgtgcccag cagctggtcc tcccgtccta
      421 cctccagaag agcctagcgc gtgcaccatc cccaccccct ggcccccctc cccacctgcg
      481 gctttcacgc actcgcagtg attgttttgc ccgctcccgc cgccgccgcc gccgccgcgg
      541 ccgccagagg agcagcagcg cttgtgcaaa ccgggaagat ggcggccggc ggcggcggag
      601 gcggcagtaa ggcctcctcc tcgtcggcct cttcggcagg ggctctggag tcctcgttgg
      661 atcgaaaatt ccagtcggta actaacacca tggaatctat tcaaggcttg tcatcttggt
      721 gtatagagaa caagaaacac cacactacta tcgtctacca ttggatgaag tggctccgga
      781 gatctgccta tccccaccgt ttgaatctct tttaccttgc caatgatgtc atacagaact
      841 gtaaaaggaa aaacgcaatc atattccgtg aatcgtttgc tgatgtactt ccagaagcag
      901 ctgctctagt gaaggatcca tctgtctcta agtctataga acgaatcttt aaaatctggg
      961 aagatagaaa tgtataccca gaagaaatga ttatggcgtt aagagaagct ttgagtacca
     1021 ctttcaaaac tcagaagcag ctgaaagaaa atctgaacaa acaaccgaat aagcagtgga
     1081 agaaatcaca aacatccacg aatccaaaag ctgctctcaa gtctaagata gttgctgaat
     1141 ttcgatctca ggccctcatt gaagagctgt tgctgtacaa gcgctcagaa gatcagatag
     1201 aattgaaaga aaaacagctg tcaactatga gggtggatgt gtgcagcaca gaaactctca
     1261 aatgcttaaa agataagaca ggtgggaaga aattctccaa agaatttgaa gaggcaagtg
     1321 ccaagctgga ggaatttgtg aatggactag ataagcaggt gaaaaatggg ccctcactaa
     1381 cagaagcact tgaaaatgct ggaattttct atgaagcaca gtacaaagaa gtaaaagtgg
     1441 tggccaatgc atataaaacc tttgctaatc gagtgaacaa tttaaagaaa aagctggatc
     1501 aattgaagtc aacccttcct gatcctgagg aatcaccagt cccttcccca agcatggatg
     1561 ctccctctcc aactggctct gagtctcctt ttcaaggaat gggaggtgag gagtcccagt
     1621 caccaaccat ggagagtgag aaatctacca cacctgagcc tgcaacagat aatcgtgatg
     1681 tggaagacat ggaactctca gatgtggaag atgatgggtc aaaaatcatt gaagacagga
     1741 aggaaaaacc tgtggagaag tcagctgtat ccactgctgt acctacaaag ccaacagaaa
     1801 gtatctcaaa ggcctcttca tgtactccag tgcctgtgac catgacagca accccacctc
     1861 ctccaaagcc tgtgaatact tctcttctct cccctactcc agcactggct ttgccaaacc
     1921 tggctaatgt ggatctggca aagatcagtt ccatccttag cagcctgaca tcagtcatga
     1981 aaaatactgg ggtcagtcct gcatcaagac cttctccagg aactcctgca agtcccagca
     2041 acctcaccag tggtctgaaa acacctgcac ctgccacgac aacatctcat aaccctctag
     2101 caaatatcct ctcgaaggtg gagatcaccc cagagagcat tctgtctgct ctttccaaaa
     2161 cccagacaca gtcagcccct gcactgcaag gcctgtcatc tttacttcag agtgttactg
     2221 ggaacccagt tccatccagc gaagctgcat cccagagcac ttcggcttcc cctgccaaca
     2281 ccacagtctc tagcataaaa ggaagaaatc taccctccaa tacccaatcc tttattccga
     2341 aaagctttag ctattcccct aattcatcaa cttctgaagt ctcttcaact tcagccagca
     2401 aggcctcaat tgggcaaagc ccagggctcc ccagctctac tttcaagcta ccatccaaca
     2461 ctctggggtt tacaggtacc cacagtacta gccctgctgc cccacctact gaagttgcca
     2521 tgtgccaatc ttcagagatc tccaagccaa agctggagtc agagtccacc tccccaagcc
     2581 tggaaatgaa gatccacaac ttcttaaaag gtaatcctgg tttcagtggc ttaaacttaa
     2641 acatcccaat cctgagcagt ttgggatcca gtgccccagc agaaagccat ccctcagact
     2701 tccagcgtgg ccctactagc acatcaatcg acaacattga tggaacccct gtgcgggatg
     2761 aacggagtgg gacacccacc caggatgaga tgatggacaa gcccacatcc agcagtgtag
     2821 ataccatgtc cctgctttct aagatcatta gccctggttc ctcaacaccc agcagcacaa
     2881 gatcaccacc ccctgggaga gaggaaagct atcctcgaga gctctccaat tctgtatcta
     2941 cgtatcgacc ctttggcctg ggcagtgaat caccctataa gcagccttct gatggaatgg
     3001 agagaccatc ttccctgatg gactcttcac aggagaaatt ctatccagat acttctttcc
     3061 aggaagatga agattaccga gattttgagt attcagggcc tccaccctct gccatgatga
     3121 acctagagaa gaaaccagcc aaatctatcc tgaaatcaag caagctttct gataccaccg
     3181 agtaccagcc catcttgtcc agttacagcc acaggggcca agaatttggg gtaaagtctg
     3241 ccttccctcc atctgtaagg gccctcctgg actctagtga gaactgtgac cgtctctcgt
     3301 cttcccctgg gctttttggt gccttcagca taagagggaa tgaacctggg tctgaccggt
     3361 caccatcacc gagtaagaat gattcatttt tcacccctga ctccaaccac aataacttgt
     3421 ctcagtctac cactgggcat ctcagtttgc cacagaagca gtacccagac tctcctcacc
     3481 cagttccaca tcgttccctt ttctctccgc agaataccct tgctgctccc acgggccacc
     3541 cacccacgtc aggcgtggag aaagtcctgg cctccaccat ttccaccaca tcgacgattg
     3601 agtttaagaa tatgcttaaa aatgcctcgc gaaagccctc agatgataaa cattttggcc
     3661 aggcccccag caagggcact tcaagtgatg gtgtcagtct ctcaaacctc tcccagccca
     3721 gcttgacagc cagtgatcag cagcagcaag aagagcacta ccgcatagag acccgagtct
     3781 cctcctcctg cttagacttg cctgatagta cggaagaaaa gggggcccct atagagacct
     3841 tgggttatca taatgcatcc aataggagga tgtcagggga gccaatacag actgtagagt
     3901 ccatccgagt tcctgggaag ggaaatagag gacatgggcg tgaggcttca agggtgggtt
     3961 ggtttgatct gagcacctca ggcagctctt ttgacaatgg cccctcaagt gcctctgagt
     4021 tggcatccct tgggggtggg ggcagcggag gcctcactgg ctttaaaaca gcaccataca
     4081 aagaacgagc accccaattt caggaaagtg tcggcagctt tcgttccaac agtttcaact
     4141 caacatttga gcatcatctc cccccgtccc cattggaaca tgggacaccc ttccagagag
     4201 agccagtggg gccatcatct gccccacctg cccctcctaa ggatcatggt ggtatcttct
     4261 ctcgagatgc acccactcat ctaccctctg tggatctttc gaaccccttc acaaaggagg
     4321 cagccctggc ccatgctgcc ccacctcctc ctggagagca cagcggagtt cctttcccca
     4381 ccccaccccc tcctccgccc cctggggaac atagcagcag tggcgggagt ggcgtccctt
     4441 tctccactcc tcctcctcct ccacctcctg ttgaccactc tggggttgta cccttcccga
     4501 ccccaccact ggcagagcac ggagtggcgg gcgctgtggc agtatttccc aaggaccata
     4561 gttccctcct tcaggggacc ctggctgatc attttggggt gctcccagga cccagggacc
     4621 atgggggccc cacccaacgg gacctcaacg gccctggcct taaccgtgta cgcgagagcc
     4681 tgagcctacc ctccctttct ctggagcact tgggcccagc ccatggagga ggaggtgggg
     4741 gaggcagcag caacagcagc ggccccccct tgggtccctc acacagagac gccatcagcc
     4801 ggagtggtat gatcttgcgg agtccccggc cagacttccg gcctagggaa ccttttctca
     4861 gcagagaccc ttttcacagt ttaaagagac ccaggccacc tttcgctagg ggccctccgt
     4921 tctttgcacc aaaacgccca ttcttccctc ccaggtactg atggaaacta agggaaaggc
     4981 attttgaaca gtctagagag aattggaagt aggagtttgg tttattattc ttgtttttgt
     5041 ttgttttccc tcctttgatt tattttttct tttttttatt atgacagagg acctcccttc
     5101 caaattaaaa agtcccatgt gcatatgccc acatttcact attccatcca gtcctgcctc
     5161 ccactgcact tatacccacc ttctccaact tgtttgtatt ttaagggggt ggggggcaaa
     5221 gaaacacaac caaagccact tcatttggct gggggtttga ggggtgggga ggaaaacagc
     5281 tcgtatctta ccccatctat ggaagagtat tattacattt gaaataaaac ttccatcagt
     5341 acagataata acatgtgcaa tgttgggatg ttattttggg cttggcatgt caaaagtagt
     5401 cagtgaagga ttcctgtccc cttctctctc cagctccttt actgctgtaa ccagtgtggc
     5461 tctcttccct gtatgctctg tggcctgctg acagccagga gatgttgcag gggagaaatg
     5521 tgggagacct gggacctgtc aagttgtatt gttctgcttt gttttgtttt taaaggcatg
     5581 ttgcagttga gttctttacc tctctcctaa aatctaaagc ttcttttttt ttcctcttct
     5641 aaagtactat caggcagtaa ctttgaggag atacggacct cattttatcc tagtaaaaaa
     5701 ttttcctctt tttacttgga gtgaaagaaa gggggctgga tataatttaa aggttaaaat
     5761 aaggagtagc tacaatatag agagctagag aaaggaactg ttaaatggtg tgttgtgacc
     5821 tgcccatctg tcataaacaa ggaaacattt ctgaggtagt ttcacacatc ttgcaccaac
     5881 ctctttcttc ctgcttttct ttcttgacta tttcctccct cagttttcat ttctgcttta
     5941 gccagagaga gtcactacag ttgacaattg atatgaaggt gtaactgaaa tgttatcaaa
     6001 tattatccct gtatttttta ataagtacac atttttacca tggtgcctcc ctaacgtaag
     6061 tggcatttgt tggtagtttt cagcaaaagt taactacaag ggaaagggaa atatttgtct
     6121 ttatctttct tttccccttg acctagtcct gtattcaccc ctcttcttgg tatttcgaag
     6181 gaagaagttc agtagcatct ttttttatat tatacctctt tagatctgtc ttagtgacaa
     6241 gtgggtattc ttatatgtat ctttacagag aaacaggagg acccgataaa ttcaaattta
     6301 ccccactcta cagatagcag cctgtcacat ttcaaggctc aatccttaac ctcacctccc
     6361 actctcaata gaaaataatg tttctgccct tagtcatttt ccatgagaaa ggaatgcttt
     6421 tcttgtccct gaactgaaag gcttcttatt tgtatttcta caactagtac tgggaaaagg
     6481 acaatcactg cattctgagt gtttatatct ttatatctag ggacactgaa aggcaaatgt
     6541 tgctttacta ctctttttta tttagtgtct taccccaagg tacacactgg tcatctccag
     6601 ccagatgagt aaaaaaaaag gaaattctag caagtttcat attttcttcc aagttagtat
     6661 aggagtaact gtaggaagta tggggattgc tctggattcc tccagcgaaa tattaaagat
     6721 gggagagagt gggcagtgta gtgacagaag atgattattt gtctcaaaag aaacttgctt
     6781 ttcagataaa gagcgtttca gataaagagc agcttaaacc aggtgtgcat catagtttgg
     6841 gagtttttgt gtaatttatt ccatattatt tatttgggct cgtcatgttt tctttggtta
     6901 ggatcctgca agtcattcat cttcctaatg cgtttctggt tttaagccaa ctgttctttc
     6961 tttctttgac tttctcaagc ctctctgtcc tgtagcttcc ccccgccgcc cccccgcaaa
     7021 aatgcatgat accatgacct tgtaagtggg gtggggtata tagtgtagca aagcaaagaa
     7081 acagtacagt tatattgagt cctaagacat ttgtttagag aaaagtataa gagagtgtga
     7141 agatgggggt ggggggaggg aaagggagag ttctctctga ctcgaaactg ggataggttt
     7201 tttcttcctt tgcagaaaag tgggatgttt ttttattcta gaataaaaga atgtgaattc
     7261 tttttgctgc tctcgtttaa gctaaaagta gtgtttactt gaaaaggctc tctgaccatt
     7321 tgattttatc agaaaatgcg gggttgtcaa gacagtggct tcctgaatgt tggggcaggg
     7381 ctattgtcct caaaagcatg atagctaatc catgaaagaa ggaccttgtt gtacagttta
     7441 aaagatggac ttttaagggt tggttttttt gtggagtgtt tttttttttt ttttttaagc
//
LOCUS       XM_032603739            4308 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulation of nuclear pre-mRNA domain
            containing 2 (RPRD2), transcript variant X3, mRNA.
ACCESSION   XM_032603739
VERSION     XM_032603739.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4308
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4308
                     /gene="RPRD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739410"
     CDS             1..4308
                     /gene="RPRD2"
                     /codon_start=1
                     /product="regulation of nuclear pre-mRNA domain-containing
                     protein 2 isoform X3"
                     /protein_id="XP_032459630.1"
                     /db_xref="GeneID:116739410"
                     /translation="MAAGGGGGGSKASSSSASSAGALESSLDRKFQSVTNTMESIQGL
                     SSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD
                     VLPEAAALVKDPSVSKSIERIFKIWEDRNVYPEEMIMALREALTSTNPKAALKSKIVA
                     EFRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFE
                     EASAKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNL
                     KKKLDQLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSTTPE
                     PATDNRDVEDMELSDVEDDGSKIIVEDRKEKPVEKSAVSTAVPTKPTESISKASSCTP
                     VPVTMTATPPPPKPVNTSLLSPTPALALPNLANVDLAKISSILSSLTSVMKNTGVSPA
                     SRPSPGTPASPSNLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSA
                     PALQGLSSLLQSVTGNPVPSSEAASQSTSASPANTTVSSIKGRNLPSNTQSFIPKSFS
                     YSPNSSTSEVSSTSASKASIGQSPGLPSSTFKLPSNTLGFTGTHSTSPAAPPTEVAMC
                     QSSEISKPKLESESTSPSLEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPAESHPSD
                     FQRGPTSTSIDNIDGTPVRDERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPS
                     STRSPPPGREESYPRELSNSVSTYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYP
                     DTSFQEDEDYRDFEYSGPPPSAMMNLEKKPAKSILKSSKLSDTTEYQPILSSYSHRGQ
                     EFGVKSAFPPSVRALLDSSENCDRLSSSPGLFGAFSIRGNEPGSDRSPSPSKNDSFFT
                     PDSNHNNLSQSTTGHLSLPQKQYPDSPHPVPHRSLFSPQNTLAAPTGHPPTSGVEKVL
                     ASTISTTSTIEFKNMLKNASRKPSDDKHFGQAPSKGTSSDGVSLSNLSQPSLTASDQQ
                     QQEEHYRIETRVSSSCLDLPDSTEEKGAPIETLGYHNASNRRMSGEPIQTVESIRVPG
                     KGNRGHGREASRVGWFDLSTSGSSFDNGPSSASELASLGGGGSGGLTGFKTAPYKERA
                     PQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQREPVGPSSAPPAPPKDHGGIFSR
                     DAPTHLPSVDLSNPFTKEAALAHAAPPPPGEHSGVPFPTPPPPPPPGEHSSSGGSGVP
                     FSTPPPPPPPVDHSGVVPFPTPPLAEHGVAGAVAVFPKDHSSLLQGTLADHFGVLPGP
                     RDHGGPTQRDLNGPGLNRVRESLSLPSLSLEHLGPAHGGGGGGGSSNSSGPPLGPSHR
                     DAISRSGMILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGPPFFAPKRPFFPPRY"
     misc_feature    67..435
                     /gene="RPRD2"
                     /note="CID (CTD-Interacting Domain) of Regulation of
                     nuclear pre-mRNA domain-containing protein 2; Region:
                     CID_RPRD2; cd17001"
                     /db_xref="CDD:340798"
     misc_feature    order(106..114,121..123,235..237,244..249,256..261,
                     364..366,376..378)
                     /gene="RPRD2"
                     /note="CTD binding site [polypeptide binding]; other site"
                     /db_xref="CDD:340798"
     misc_feature    <862..1926
                     /gene="RPRD2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 atggcggccg gcggcggcgg aggcggcagt aaggcctcct cctcgtcggc ctcttcggca
       61 ggggctctgg agtcctcgtt ggatcgaaaa ttccagtcgg taactaacac catggaatct
      121 attcaaggct tgtcatcttg gtgtatagag aacaagaaac accacactac tatcgtctac
      181 cattggatga agtggctccg gagatctgcc tatccccacc gtttgaatct cttttacctt
      241 gccaatgatg tcatacagaa ctgtaaaagg aaaaacgcaa tcatattccg tgaatcgttt
      301 gctgatgtac ttccagaagc agctgctcta gtgaaggatc catctgtctc taagtctata
      361 gaacgaatct ttaaaatctg ggaagataga aatgtatacc cagaagaaat gattatggcg
      421 ttaagagaag ctttgacatc cacgaatcca aaagctgctc tcaagtctaa gatagttgct
      481 gaatttcgat ctcaggccct cattgaagag ctgttgctgt acaagcgctc agaagatcag
      541 atagaattga aagaaaaaca gctgtcaact atgagggtgg atgtgtgcag cacagaaact
      601 ctcaaatgct taaaagataa gacaggtggg aagaaattct ccaaagaatt tgaagaggca
      661 agtgccaagc tggaggaatt tgtgaatgga ctagataagc aggtgaaaaa tgggccctca
      721 ctaacagaag cacttgaaaa tgctggaatt ttctatgaag cacagtacaa agaagtaaaa
      781 gtggtggcca atgcatataa aacctttgct aatcgagtga acaatttaaa gaaaaagctg
      841 gatcaattga agtcaaccct tcctgatcct gaggaatcac cagtcccttc cccaagcatg
      901 gatgctccct ctccaactgg ctctgagtct ccttttcaag gaatgggagg tgaggagtcc
      961 cagtcaccaa ccatggagag tgagaaatct accacacctg agcctgcaac agataatcgt
     1021 gatgtggaag acatggaact ctcagatgtg gaagatgatg ggtcaaaaat cattgtagaa
     1081 gacaggaagg aaaaacctgt ggagaagtca gctgtatcca ctgctgtacc tacaaagcca
     1141 acagaaagta tctcaaaggc ctcttcatgt actccagtgc ctgtgaccat gacagcaacc
     1201 ccacctcctc caaagcctgt gaatacttct cttctctccc ctactccagc actggctttg
     1261 ccaaacctgg ctaatgtgga tctggcaaag atcagttcca tccttagcag cctgacatca
     1321 gtcatgaaaa atactggggt cagtcctgca tcaagacctt ctccaggaac tcctgcaagt
     1381 cccagcaacc tcaccagtgg tctgaaaaca cctgcacctg ccacgacaac atctcataac
     1441 cctctagcaa atatcctctc gaaggtggag atcaccccag agagcattct gtctgctctt
     1501 tccaaaaccc agacacagtc agcccctgca ctgcaaggcc tgtcatcttt acttcagagt
     1561 gttactggga acccagttcc atccagcgaa gctgcatccc agagcacttc ggcttcccct
     1621 gccaacacca cagtctctag cataaaagga agaaatctac cctccaatac ccaatccttt
     1681 attccgaaaa gctttagcta ttcccctaat tcatcaactt ctgaagtctc ttcaacttca
     1741 gccagcaagg cctcaattgg gcaaagccca gggctcccca gctctacttt caagctacca
     1801 tccaacactc tggggtttac aggtacccac agtactagcc ctgctgcccc acctactgaa
     1861 gttgccatgt gccaatcttc agagatctcc aagccaaagc tggagtcaga gtccacctcc
     1921 ccaagcctgg aaatgaagat ccacaacttc ttaaaaggta atcctggttt cagtggctta
     1981 aacttaaaca tcccaatcct gagcagtttg ggatccagtg ccccagcaga aagccatccc
     2041 tcagacttcc agcgtggccc tactagcaca tcaatcgaca acattgatgg aacccctgtg
     2101 cgggatgaac ggagtgggac acccacccag gatgagatga tggacaagcc cacatccagc
     2161 agtgtagata ccatgtccct gctttctaag atcattagcc ctggttcctc aacacccagc
     2221 agcacaagat caccaccccc tgggagagag gaaagctatc ctcgagagct ctccaattct
     2281 gtatctacgt atcgaccctt tggcctgggc agtgaatcac cctataagca gccttctgat
     2341 ggaatggaga gaccatcttc cctgatggac tcttcacagg agaaattcta tccagatact
     2401 tctttccagg aagatgaaga ttaccgagat tttgagtatt cagggcctcc accctctgcc
     2461 atgatgaacc tagagaagaa accagccaaa tctatcctga aatcaagcaa gctttctgat
     2521 accaccgagt accagcccat cttgtccagt tacagccaca ggggccaaga atttggggta
     2581 aagtctgcct tccctccatc tgtaagggcc ctcctggact ctagtgagaa ctgtgaccgt
     2641 ctctcgtctt cccctgggct ttttggtgcc ttcagcataa gagggaatga acctgggtct
     2701 gaccggtcac catcaccgag taagaatgat tcatttttca cccctgactc caaccacaat
     2761 aacttgtctc agtctaccac tgggcatctc agtttgccac agaagcagta cccagactct
     2821 cctcacccag ttccacatcg ttcccttttc tctccgcaga atacccttgc tgctcccacg
     2881 ggccacccac ccacgtcagg cgtggagaaa gtcctggcct ccaccatttc caccacatcg
     2941 acgattgagt ttaagaatat gcttaaaaat gcctcgcgaa agccctcaga tgataaacat
     3001 tttggccagg cccccagcaa gggcacttca agtgatggtg tcagtctctc aaacctctcc
     3061 cagcccagct tgacagccag tgatcagcag cagcaagaag agcactaccg catagagacc
     3121 cgagtctcct cctcctgctt agacttgcct gatagtacgg aagaaaaggg ggcccctata
     3181 gagaccttgg gttatcataa tgcatccaat aggaggatgt caggggagcc aatacagact
     3241 gtagagtcca tccgagttcc tgggaaggga aatagaggac atgggcgtga ggcttcaagg
     3301 gtgggttggt ttgatctgag cacctcaggc agctcttttg acaatggccc ctcaagtgcc
     3361 tctgagttgg catcccttgg gggtgggggc agcggaggcc tcactggctt taaaacagca
     3421 ccatacaaag aacgagcacc ccaatttcag gaaagtgtcg gcagctttcg ttccaacagt
     3481 ttcaactcaa catttgagca tcatctcccc ccgtccccat tggaacatgg gacacccttc
     3541 cagagagagc cagtggggcc atcatctgcc ccacctgccc ctcctaagga tcatggtggt
     3601 atcttctctc gagatgcacc cactcatcta ccctctgtgg atctttcgaa ccccttcaca
     3661 aaggaggcag ccctggccca tgctgcccca cctcctcctg gagagcacag cggagttcct
     3721 ttccccaccc caccccctcc tccgccccct ggggaacata gcagcagtgg cgggagtggc
     3781 gtccctttct ccactcctcc tcctcctcca cctcctgttg accactctgg ggttgtaccc
     3841 ttcccgaccc caccactggc agagcacgga gtggcgggcg ctgtggcagt atttcccaag
     3901 gaccatagtt ccctccttca ggggaccctg gctgatcatt ttggggtgct cccaggaccc
     3961 agggaccatg ggggccccac ccaacgggac ctcaacggcc ctggccttaa ccgtgtacgc
     4021 gagagcctga gcctaccctc cctttctctg gagcacttgg gcccagccca tggaggagga
     4081 ggtgggggag gcagcagcaa cagcagcggc ccccccttgg gtccctcaca cagagacgcc
     4141 atcagccgga gtggtatgat cttgcggagt ccccggccag acttccggcc tagggaacct
     4201 tttctcagca gagacccttt tcacagttta aagagaccca ggccaccttt cgctaggggc
     4261 cctccgttct ttgcaccaaa acgcccattc ttccctccca ggtactga
//
LOCUS       XM_032603740            2808 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulation of nuclear pre-mRNA domain
            containing 2 (RPRD2), transcript variant X4, mRNA.
ACCESSION   XM_032603740
VERSION     XM_032603740.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2808
                     /gene="RPRD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:116739410"
     CDS             1..2808
                     /gene="RPRD2"
                     /codon_start=1
                     /product="regulation of nuclear pre-mRNA domain-containing
                     protein 2 isoform X4"
                     /protein_id="XP_032459631.1"
                     /db_xref="GeneID:116739410"
                     /translation="MAAGGGGGGSKASSSSASSAGALESSLDRKFQSVTNTMESIQGL
                     SSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD
                     VLPEAAALVKDPSVSKSIERIFKIWEDRNVYPEEMIMALREALTSTNPKAALKSKIVA
                     EFRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFE
                     EASAKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNL
                     KKKLDQLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSTTPE
                     PATDNRDVEDMELSDVEDDGSKIIVEDRKEKPVEKSAVSTAVPTKPTESISKASSCTP
                     VPVTMTATPPPPKPVNTSLLSPTPALALPNLANVDLAKISSILSSLTSVMKNTGVSPA
                     SRPSPGTPASPSNLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSA
                     PALQGLSSLLQSVTGNPVPSSEAASQSTSASPANTTVSSIKGRNLPSNTQSFIPKSFS
                     YSPNSSTSEVSSTSASKASIGQSPGLPSSTFKLPSNTLGFTGTHSTSPAAPPTEVAMC
                     QSSEISKPKLESESTSPSLEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPAESHPSD
                     FQRGPTSTSIDNIDGTPVRDERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPS
                     STRSPPPGREESYPRELSNSVSTYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYP
                     DTSFQEDEDYRDFEYSGPPPSAMMNLEKKPAKSILKSSKLSDTTEYQPILSSYSHRGQ
                     EFGVKSAFPPSVRALLDSSENCDRLSSSPGLFGAFSIRGNEPGSDRSPSPKYPCCSHG
                     PPTHVRRGESPGLHHFHHIDD"
     misc_feature    67..435
                     /gene="RPRD2"
                     /note="CID (CTD-Interacting Domain) of Regulation of
                     nuclear pre-mRNA domain-containing protein 2; Region:
                     CID_RPRD2; cd17001"
                     /db_xref="CDD:340798"
     misc_feature    order(106..114,121..123,235..237,244..249,256..261,
                     364..366,376..378)
                     /gene="RPRD2"
                     /note="CTD binding site [polypeptide binding]; other site"
                     /db_xref="CDD:340798"
     misc_feature    <862..1926
                     /gene="RPRD2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 atggcggccg gcggcggcgg aggcggcagt aaggcctcct cctcgtcggc ctcttcggca
       61 ggggctctgg agtcctcgtt ggatcgaaaa ttccagtcgg taactaacac catggaatct
      121 attcaaggct tgtcatcttg gtgtatagag aacaagaaac accacactac tatcgtctac
      181 cattggatga agtggctccg gagatctgcc tatccccacc gtttgaatct cttttacctt
      241 gccaatgatg tcatacagaa ctgtaaaagg aaaaacgcaa tcatattccg tgaatcgttt
      301 gctgatgtac ttccagaagc agctgctcta gtgaaggatc catctgtctc taagtctata
      361 gaacgaatct ttaaaatctg ggaagataga aatgtatacc cagaagaaat gattatggcg
      421 ttaagagaag ctttgacatc cacgaatcca aaagctgctc tcaagtctaa gatagttgct
      481 gaatttcgat ctcaggccct cattgaagag ctgttgctgt acaagcgctc agaagatcag
      541 atagaattga aagaaaaaca gctgtcaact atgagggtgg atgtgtgcag cacagaaact
      601 ctcaaatgct taaaagataa gacaggtggg aagaaattct ccaaagaatt tgaagaggca
      661 agtgccaagc tggaggaatt tgtgaatgga ctagataagc aggtgaaaaa tgggccctca
      721 ctaacagaag cacttgaaaa tgctggaatt ttctatgaag cacagtacaa agaagtaaaa
      781 gtggtggcca atgcatataa aacctttgct aatcgagtga acaatttaaa gaaaaagctg
      841 gatcaattga agtcaaccct tcctgatcct gaggaatcac cagtcccttc cccaagcatg
      901 gatgctccct ctccaactgg ctctgagtct ccttttcaag gaatgggagg tgaggagtcc
      961 cagtcaccaa ccatggagag tgagaaatct accacacctg agcctgcaac agataatcgt
     1021 gatgtggaag acatggaact ctcagatgtg gaagatgatg ggtcaaaaat cattgtagaa
     1081 gacaggaagg aaaaacctgt ggagaagtca gctgtatcca ctgctgtacc tacaaagcca
     1141 acagaaagta tctcaaaggc ctcttcatgt actccagtgc ctgtgaccat gacagcaacc
     1201 ccacctcctc caaagcctgt gaatacttct cttctctccc ctactccagc actggctttg
     1261 ccaaacctgg ctaatgtgga tctggcaaag atcagttcca tccttagcag cctgacatca
     1321 gtcatgaaaa atactggggt cagtcctgca tcaagacctt ctccaggaac tcctgcaagt
     1381 cccagcaacc tcaccagtgg tctgaaaaca cctgcacctg ccacgacaac atctcataac
     1441 cctctagcaa atatcctctc gaaggtggag atcaccccag agagcattct gtctgctctt
     1501 tccaaaaccc agacacagtc agcccctgca ctgcaaggcc tgtcatcttt acttcagagt
     1561 gttactggga acccagttcc atccagcgaa gctgcatccc agagcacttc ggcttcccct
     1621 gccaacacca cagtctctag cataaaagga agaaatctac cctccaatac ccaatccttt
     1681 attccgaaaa gctttagcta ttcccctaat tcatcaactt ctgaagtctc ttcaacttca
     1741 gccagcaagg cctcaattgg gcaaagccca gggctcccca gctctacttt caagctacca
     1801 tccaacactc tggggtttac aggtacccac agtactagcc ctgctgcccc acctactgaa
     1861 gttgccatgt gccaatcttc agagatctcc aagccaaagc tggagtcaga gtccacctcc
     1921 ccaagcctgg aaatgaagat ccacaacttc ttaaaaggta atcctggttt cagtggctta
     1981 aacttaaaca tcccaatcct gagcagtttg ggatccagtg ccccagcaga aagccatccc
     2041 tcagacttcc agcgtggccc tactagcaca tcaatcgaca acattgatgg aacccctgtg
     2101 cgggatgaac ggagtgggac acccacccag gatgagatga tggacaagcc cacatccagc
     2161 agtgtagata ccatgtccct gctttctaag atcattagcc ctggttcctc aacacccagc
     2221 agcacaagat caccaccccc tgggagagag gaaagctatc ctcgagagct ctccaattct
     2281 gtatctacgt atcgaccctt tggcctgggc agtgaatcac cctataagca gccttctgat
     2341 ggaatggaga gaccatcttc cctgatggac tcttcacagg agaaattcta tccagatact
     2401 tctttccagg aagatgaaga ttaccgagat tttgagtatt cagggcctcc accctctgcc
     2461 atgatgaacc tagagaagaa accagccaaa tctatcctga aatcaagcaa gctttctgat
     2521 accaccgagt accagcccat cttgtccagt tacagccaca ggggccaaga atttggggta
     2581 aagtctgcct tccctccatc tgtaagggcc ctcctggact ctagtgagaa ctgtgaccgt
     2641 ctctcgtctt cccctgggct ttttggtgcc ttcagcataa gagggaatga acctgggtct
     2701 gaccggtcac catcaccgaa atacccttgc tgctcccacg ggccacccac ccacgtcagg
     2761 cgtggagaaa gtcctggcct ccaccatttc caccacatcg acgattga
//
LOCUS       XM_032603743            7168 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus threonyl-tRNA synthetase 2, mitochondrial
            (TARS2), transcript variant X1, mRNA.
ACCESSION   XM_032603743
VERSION     XM_032603743.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7168
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7168
                     /gene="TARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 11 long SRA reads, 7
                     Proteins, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739456"
     CDS             236..2392
                     /gene="TARS2"
                     /codon_start=1
                     /product="threonine--tRNA ligase, mitochondrial isoform
                     X1"
                     /protein_id="XP_032459634.1"
                     /db_xref="GeneID:116739456"
                     /translation="MGLCQTWRRLRIPGLQACGLHMAAVPTPPHWLVERLGLFEELWT
                     AQVKRLASLAQEEHRTIKISLPGGQKVDAVAWNTTPYQLAQQISSKLADTAVAAQVNG
                     EPYDLERPLETDSDLRFLTFDSAEGKAVFWHSSTHVLGAAAEQLLGAVLCQGPSTGCG
                     FYHDFFLGKERTIKGSELPALERICQELAAAAQPFRRLEASQDQLRQLFKDNPFKLHL
                     IEEKVTGPTATVYGCGMLVDLCRGPHLRHTGQIGGLKLLSNSSSLWRFSGTPETLQRV
                     SGISFPTAEELRAWEEWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNV
                     LVAFIRAEYTRRGFSEVKTPTLFSTKLWELSGHWEHYREDMFALQPPGSDSHAGSQSD
                     HSTSHPTGTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGSLGGLTR
                     LRRFQQDDAHIFCAPDQLEAEIRGCLDFLRSVYTVLGFSFSLALSTRPSGFLGEPCLW
                     DQAEQVLQQALEEFGEPWDLNPGDGAFYGPKIDVHLRDALGRPHQCGTIQLDFQLPLR
                     FDLQYKGQAGALERPVLIHRAVLGSVERMLGVLAESCGGKWPLWLSPFQVVVIPVGTE
                     QEEYAREAQRSLQAAGLVGDLDADSGLTLGRRIRRAQLAHYNFQFVVGQKEQSKRTVN
                     VRTRDNRRLGERDLVEAIQRLLELQNTRVPNAEEIF"
     misc_feature    302..2365
                     /gene="TARS2"
                     /note="threonyl-tRNA synthetase; Region: PLN02908"
                     /db_xref="CDD:178496"
ORIGIN      
        1 ggaattgccc atatgtgtaa cagtttaggt cttccggtca gccggaacca gccgcaactc
       61 tgctctcgct gtgtggggta tacctcttcg gagttcctgg aggtggtccc agactggagt
      121 ggcagctgta ataaccaata ggcatggaca ttgttgggcc ggaagccaat gaggaatctg
      181 gcgatggaga agcggcgatc atttatttga ggatgtagga cgggtctgaa ggaaaatggg
      241 gctgtgtcag acgtggcggc ggcttcggat cccagggtta caagcctgcg ggctgcacat
      301 ggcagctgtg ccgacccctc cacactggtt ggtagagcgg cttggccttt ttgaggagct
      361 atggactgct caggtaaaga ggttagcaag cctggcacag gaggaacacc ggactatcaa
      421 gatatcactt cctggaggcc agaaagtgga tgctgtggca tggaacacaa ccccttacca
      481 actagcccag cagatcagtt ctaaactggc cgatactgca gtggctgctc aagtgaatgg
      541 agaaccttat gatctggagc ggcccttaga gacagattct gacctcagat ttctgacatt
      601 cgattctgca gaggggaaag cagtattctg gcactccagt acccatgtcc tgggggcagc
      661 agctgaacaa cttctaggtg ctgtcctctg tcaaggtcca agcacaggat gtggctttta
      721 ccatgatttc ttccttggaa aggaacggac aatcaaaggc tcagagctgc ctgctttgga
      781 acggatttgt caggaacttg cagctgctgc tcaacccttc cggagactag aggcttccca
      841 ggatcagctt cggcagctct tcaaggataa cccctttaag cttcacctga tcgaggagaa
      901 agtgacaggt ccaacggcaa cagtatatgg gtgtggtatg ttggttgatc tgtgcagagg
      961 cccccacctt cgtcatactg gacagattgg aggcctgaag ctgctatcga actcatcatc
     1021 cttatggagg ttttctggca ccccagagac actgcagaga gtgtcaggga tttccttccc
     1081 cactgcagag gagctgaggg cctgggaaga gtggagggag gaagcagagt tacgggacca
     1141 ccggcgcatt gggaaggaac aggagctctt cttcttccat gaactgagcc ccgggagctg
     1201 cttcttcctg cctcgaggga caagggtgta taatgtactc gtggctttta tcagggccga
     1261 gtacacccgc cgtggtttct cagaagtgaa aacccccacg ttgttttcta cgaaactctg
     1321 ggaactgtca gggcactggg agcattaccg ggaagacatg tttgccctgc agcccccagg
     1381 ctctgacagc catgccggct cccagagtga ccactctacc agccatccca caggcacgct
     1441 tgccctcaag cccatgaact gccctgcgca ctgcctgatg ttcgcccacc ggcccagatc
     1501 ctggcgagag ctgcccctgc gactggccga cttcggggcc ttgcaccggg ccgaggcctc
     1561 tggcagtctg gggggactga cccggctgcg gcgcttccag caagatgacg ctcacatctt
     1621 ctgtgcaccc gatcagctgg aagcagagat ccgaggctgt cttgatttcc tccgctctgt
     1681 ctacactgtc cttgggttct ccttcagctt ggcactgtct acccggccat ctggcttcct
     1741 gggagagcct tgcctttggg accaggctga gcaggtcctt caacaggccc tagaagaatt
     1801 tggagaaccc tgggacctca accctggaga tggtgccttc tatgggccta agattgacgt
     1861 gcacctccgc gatgccctgg gtcggcccca tcagtgtggg acaatccagc ttgacttcca
     1921 gctgcccctg agatttgacc tccagtacaa ggggcaggcg ggggccctgg agcgtccagt
     1981 cctcattcat cgagcagtgc taggttctgt ggaaaggatg ttgggagtgc tggcggaaag
     2041 ctgcggggga aaatggccac tatggctgtc accattccag gtggtggtca tacctgtggg
     2101 aactgagcaa gaggaatatg ccagggaggc acagcggagc ctgcaagctg caggactggt
     2161 tggcgacctg gatgctgact ccggactgac cctcggccgg aggatccgcc gggctcagct
     2221 tgcccactac aattttcagt tcgtggttgg ccagaaagag cagagtaaga gaacagtgaa
     2281 cgttcggact cgagataatc gtcgacttgg ggaacgagac ttggtcgagg ctatacagcg
     2341 gctactggag ctacagaaca ccagggtccc aaatgctgaa gaaattttct gagcttttgt
     2401 gtacagatgt ggcaaagacc tgtaggagct atcaggcccc cttaacacgg aggggcccaa
     2461 cctaactgac aagagtctga agtcccccag acccctcaga actcgtgtgg aggcatgaat
     2521 ctgctctcat gaaaagagat ttggtctggg ggaagctgta gctgtttgga tgtgaggaga
     2581 gtgaaactaa aaataataaa cttgaagtta ctgggaatgt gtcttcatct ctaactcctg
     2641 gtggggacat aaaagggagt ttgactctgt ctcccactct tttgtcctag ggggttgggg
     2701 taattgaaaa ggggctctca ctggtcgggg agctccctgg gatagctgtc ctgttcccct
     2761 gtctaaactc ctcagtgccc tgtttcccca gccccaattc agcaggttgt cagatccatt
     2821 ctccaaagaa ggccaaatgg agaaattgag gcacaaaaca aagtctcaga cctctcttgc
     2881 tccaggattc tcagaatcag tttctcttgg ggttgggttc accattgttc tcaatcctgt
     2941 caggagcctt cagggtgtgt gggaggagtg tctgccagag gaggagcagc tgggactgag
     3001 tcatggccgg atgctgagga gggcggtagc tatccccaga tagactataa agaggagaag
     3061 gaaccagccc tgaagttcac aacagcagta acagcaactg gagaagcagg tttccagaag
     3121 cccggctctt caaatcagat ctgcctgaga ggacctacgt gggtggccac tgaccagtcc
     3181 ttgccccagg atggggacca cgtccggagc agccttggtc ttggcctgtt tagctgttgc
     3241 ttctgtagcc tctaagagag gcatcaaggc ttcagggcag agggagctgg ggccagtgca
     3301 cctcacccac ccacttcaag aaggtaagag tttgggggag tggcatggga ttggggttcc
     3361 aggaggaaat gtaggctctg accatctccc ttcttgccag tagttggcta tgctgcaccc
     3421 ccttccccac ctctgaccag agctctcgcc atggatcacc ccgacacctc tcagcatagc
     3481 cctcactttg aaggacagag tgaaggtaag tctcagttgc acctctaggt ttctagtctg
     3541 acttacttcc tgatcttcag aatgggaggg gaagaaggag tgggctactt aacacactct
     3601 gctttctgta gtacagccat ctccatctca gaaagccatc cctgtccaag aggagctgcc
     3661 ccctccccaa ctccctgtgg aaaagaaagg tgagtgcctg ccctttccct cacttccacc
     3721 cactacatct tgctgacatc agcctgagcc ttgctctttt gtgtcctcat ccctatcttg
     3781 cagaggatct gcctctccct caagaggccg tcaccctaca agaagagctg tcccctcccc
     3841 aggtccctat tgaacagaag gaaggtaagt gactccttcc cctctttacc ctcctgccta
     3901 cccgtggctg acagcatggg ctttggggct tctgccactt actagctgtg taataacctt
     3961 gggtaagtta cctctctaag ccttagttca tttgtaaaat tggggaaata atacctattt
     4021 tataaaatta taagattaca tgacacaaaa gtagcattta ctttcacttc tctattgagt
     4081 tacttttttt ttttaaagca tatgctattt cttttttttt aaattttatt tattgattga
     4141 ttttgggctg tgttgggtct ttgttgcggc acgcaggatc tctgttgagg catgcgggat
     4201 ctttcgttgc agcatgcagg tttctctcta gttgtggcgt gcgggttttt ttctcttttc
     4261 tagctgtggc gcataggctc cagggcacat gggctctgta gttgtggtgc gcaggttcca
     4321 gaatgcgtgg gctctctagt tgaggcgtgc gagctcagta gttgtggcat gcaggtttag
     4381 ttgccgtgtg gcatgtagga tcttagttcc ctgaccgggg atcgaacccg cgtcccctgc
     4441 attggaaggc ggattcttta ccactggacc accaggaaag tccctctatt gagttacttt
     4501 ttatgaatgg gaactggcct gtcttctaga gatgcccgtc ccaacatgaa tgttgtttta
     4561 cgcatctcct tctaccccag tagacccatc tttcctttat caagaggaga tgaccttcca
     4621 atctaaacac agagagagtg acagctttag tctgtccatc ccccagcttt aatgctcaga
     4681 ccctggtcgg ggtagtgggg tgggggagca ggtattctga gccttgggaa gcagcaaagg
     4741 gagcaggcgt gattcagggt cagggagcta taagggtgac acctttcatg actcaggtct
     4801 cttccttttg gtcagtcatt ctgaagttaa gagccacgaa ttcatttgtc cccttttcct
     4861 ctatatcctc ccaacacttt ctcctcaacc ccaacttctt tcaatcctcc caactcaatc
     4921 cagcctttct ctatccctct gcatgttccc ccttcccact ctgttctccc cattctagaa
     4981 aagctggctc ccttcatgga ccacagcccc ccagagcctg agtcttcgaa tccagcccag
     5041 cactgccaac agggcggaca ccaaggtggc tggggccacc ggctggatgg cttcccccct
     5101 gggcggcctt ctccggacaa tctggaccag atctgccttc ctaatcgtca gcatgtggtg
     5161 tacggccctt ggaacctgcc acagactggc ttttcccacc ttgttcgtca gggtgagacc
     5221 ctcaatttgc tggagactgg atattcccgc tgctgccgct gtcacagcta cacaaaccgc
     5281 ttggactgtg cgaaagtcac ggtaagggtt gggctcttga tcctggggat gtcctttaac
     5341 ccccagacag tatgtgtgtg tttcgaggac tagaggccta ggcctgggta tgcaggaacc
     5401 tcaggtccct ttcattggcc ctaccttggg cctcctcatt gtgccagaag agcagaggac
     5461 agcctctgcc tctttattat ctgcataccc agggtccttt ttggagcctg ggaggaaaac
     5521 aggtatgtgg agagtgggct accaggctga tctactcctc ttgctctagt gggaagacgc
     5581 aatgacccgg ttctgtgagg ctgagttttc tgttaagacc cgaccccatt ggtgctgcaa
     5641 acgtcagggg gaggctcgat tctcctgctt ccaagatgaa gctccctggc cacactacca
     5701 gctccaggcc tgccccagcc accagcctgg tatttcctcg ggtcctgagc tgccttttcc
     5761 ccctgggcta cccacactgg acaatatcaa gaacatctgc cacctaagac gcttctgctc
     5821 tgtgccacgc aacctcccag ctactgaccc catccagagg cagctgcagg ctctgaccca
     5881 gctggagggg gagttccagc actgctgccg gcaggggaac aaccacacct gtacatggaa
     5941 ggcctggaag gatacccttg atggctactg tgatcaggaa aaggctacaa atacccacca
     6001 ctactcatgt tgccactacc ctcctagtcc tgcccgagat gagtgctttg cccggcaggc
     6061 tccctatccc aactatgacc gggacatctt gaccctggac ctcagccgaa tcacccccaa
     6121 cttcatgagt catctctgtg gaaatcaagg agttttcacc aagcagtgag tcttgcccag
     6181 ttctttccca actcttttcc cttctccaaa acgtcccttt tggggcaccc tctggggcac
     6241 tcttgggaag agcaaaatca tggtctgcaa gcaccatttt gatgcctgga gacacccaaa
     6301 gaccctgacc cctacctgtt tcccaccaac atagtaagca gattcctggg ctgatccaga
     6361 acgtgactgc ccgctgctgt gacctgccgt ttccagagca ggcctgctgt gctgaggagg
     6421 aggtgagtgt gagggcaggg ggtcatagtc tccagaggaa cgcagaggag gggagagaga
     6481 gggctggaac tgcaggatac cccttctttt agtacctcaa accagcccat agaaataatg
     6541 aggactactg gggagatctt ttttcttggt tccaggagtc ttcacttctg acctgacctg
     6601 ctcgccatct ctaagtgcct attatgtctt ctctgggcct ctagcttctg gcatttccag
     6661 atgttcacat ctgtccatca caaggagtct agctgtggaa ggcagcctgg tactctctct
     6721 gagccccaga agggatctag ggagagagca gtagaaactg agggaagggg gactttggac
     6781 atccaagtaa ccaggcctga cctctgacaa ccttcctccc ctatcgtgtc cgctttactc
     6841 cttcatcaga aatcatcctt tattgataac ctgtgtggtc cccgacgtaa cttctggcga
     6901 gactctgcct tctgctgtaa actgagtcct ggggatgaac agatcaactg cttcaacact
     6961 aattatctga ggaatgtggc tctagtggct ggagacatta gggatgccaa ggaccagagg
     7021 gagcagggcc caacttgggg aacaaatatc agccccaccc ctgagcccaa ggaagagtga
     7081 gtcaccccag agccttggag gatcagattg ggggacccca tcgcaccctc ctggaatact
     7141 cattacagta aacacctctt ggatttgg
//
LOCUS       XM_032603752            2207 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus threonyl-tRNA synthetase 2, mitochondrial
            (TARS2), transcript variant X2, mRNA.
ACCESSION   XM_032603752
VERSION     XM_032603752.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2207
                     /gene="TARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739456"
     CDS             249..2012
                     /gene="TARS2"
                     /codon_start=1
                     /product="threonine--tRNA ligase, mitochondrial isoform
                     X2"
                     /protein_id="XP_032459643.1"
                     /db_xref="GeneID:116739456"
                     /translation="MGLCQTWRRLRIPGLQACGLHMAAVPTPPHWLVERLGLFEELWT
                     AQVKRLASLAQEEHRTIKISLPGGQKVDAVAWNTTPYQLAQQISSKLADTAVAAQVNG
                     EPYDLERPLETDSDLRFLTFDSAEGKAVFWHSSTHVLGAAAEQLLGAVLCQGPSTGCG
                     FYHDFFLGKERTIKGSELPALERICQELAAAAQPFRRLEASQDQLRQLFKDNPFKLHL
                     IEEKVTGPTATVYGCGMLVDLCRGPHLRHTGQIGGLKLLSNSSSLWRFSGTPETLQRV
                     SGISFPTAEELRAWEEWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNV
                     LVAFIRAEYTRRGFSEVKTPTLFSTKLWELSGHWEHYREDMFALQPPGSDSHAGSQSD
                     HSTSHPTGTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGSLGGLTR
                     LRRFQQDDAHIFCAPDQLEAEIRGCLDFLRSVYTVLGFSFSLALSTRPSGFLGEPCLW
                     DQAEQVLQQALEEFGEPWDLNPGDGAFYGPKIDVHLRDALGRPHQCGTIQLDFQLPLR
                     FDLQYKGRGPWSVQSSFIEQC"
     misc_feature    315..>1961
                     /gene="TARS2"
                     /note="threonyl-tRNA synthetase; Region: PLN02908"
                     /db_xref="CDD:178496"
ORIGIN      
        1 actgcaggtc tctggaattg cccatatgtg taacagttta ggtcttccgg tcagccggaa
       61 ccagccgcaa ctctgctctc gctgtgtggg gtatacctct tcggagttcc tggaggtggt
      121 cccagactgg agtggcagct gtaataacca ataggcatgg acattgttgg gccggaagcc
      181 aatgaggaat ctggcgatgg agaagcggcg atcatttatt tgaggatgta ggacgggtct
      241 gaaggaaaat ggggctgtgt cagacgtggc ggcggcttcg gatcccaggg ttacaagcct
      301 gcgggctgca catggcagct gtgccgaccc ctccacactg gttggtagag cggcttggcc
      361 tttttgagga gctatggact gctcaggtaa agaggttagc aagcctggca caggaggaac
      421 accggactat caagatatca cttcctggag gccagaaagt ggatgctgtg gcatggaaca
      481 caacccctta ccaactagcc cagcagatca gttctaaact ggccgatact gcagtggctg
      541 ctcaagtgaa tggagaacct tatgatctgg agcggccctt agagacagat tctgacctca
      601 gatttctgac attcgattct gcagagggga aagcagtatt ctggcactcc agtacccatg
      661 tcctgggggc agcagctgaa caacttctag gtgctgtcct ctgtcaaggt ccaagcacag
      721 gatgtggctt ttaccatgat ttcttccttg gaaaggaacg gacaatcaaa ggctcagagc
      781 tgcctgcttt ggaacggatt tgtcaggaac ttgcagctgc tgctcaaccc ttccggagac
      841 tagaggcttc ccaggatcag cttcggcagc tcttcaagga taaccccttt aagcttcacc
      901 tgatcgagga gaaagtgaca ggtccaacgg caacagtata tgggtgtggt atgttggttg
      961 atctgtgcag aggcccccac cttcgtcata ctggacagat tggaggcctg aagctgctat
     1021 cgaactcatc atccttatgg aggttttctg gcaccccaga gacactgcag agagtgtcag
     1081 ggatttcctt ccccactgca gaggagctga gggcctggga agagtggagg gaggaagcag
     1141 agttacggga ccaccggcgc attgggaagg aacaggagct cttcttcttc catgaactga
     1201 gccccgggag ctgcttcttc ctgcctcgag ggacaagggt gtataatgta ctcgtggctt
     1261 ttatcagggc cgagtacacc cgccgtggtt tctcagaagt gaaaaccccc acgttgtttt
     1321 ctacgaaact ctgggaactg tcagggcact gggagcatta ccgggaagac atgtttgccc
     1381 tgcagccccc aggctctgac agccatgccg gctcccagag tgaccactct accagccatc
     1441 ccacaggcac gcttgccctc aagcccatga actgccctgc gcactgcctg atgttcgccc
     1501 accggcccag atcctggcga gagctgcccc tgcgactggc cgacttcggg gccttgcacc
     1561 gggccgaggc ctctggcagt ctggggggac tgacccggct gcggcgcttc cagcaagatg
     1621 acgctcacat cttctgtgca cccgatcagc tggaagcaga gatccgaggc tgtcttgatt
     1681 tcctccgctc tgtctacact gtccttgggt tctccttcag cttggcactg tctacccggc
     1741 catctggctt cctgggagag ccttgccttt gggaccaggc tgagcaggtc cttcaacagg
     1801 ccctagaaga atttggagaa ccctgggacc tcaaccctgg agatggtgcc ttctatgggc
     1861 ctaagattga cgtgcacctc cgcgatgccc tgggtcggcc ccatcagtgt gggacaatcc
     1921 agcttgactt ccagctgccc ctgagatttg acctccagta caaggggcgg gggccctgga
     1981 gcgtccagtc ctcattcatc gagcagtgct aggttctgtg gaaaggatgt tgggagtgct
     2041 ggcggaaagc tgcgggggaa aatggccact atggctgtca ccattccagg tggtggtcat
     2101 acctgtggga actgagcaag aggaatatgc cagggaggca cagcggagcc tgcaagctgc
     2161 aggactggtt ggcgacctgg atgctgactc cggactgacc ctcggcc
//
LOCUS       XM_032603760            6743 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus threonyl-tRNA synthetase 2, mitochondrial
            (TARS2), transcript variant X3, mRNA.
ACCESSION   XM_032603760
VERSION     XM_032603760.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6743
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6743
                     /gene="TARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, and 92% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739456"
     CDS             225..1967
                     /gene="TARS2"
                     /codon_start=1
                     /product="threonine--tRNA ligase, mitochondrial isoform
                     X3"
                     /protein_id="XP_032459651.1"
                     /db_xref="GeneID:116739456"
                     /translation="MISSLERNGFHPMANTQVMLLRGWKPTNPHLSRTIKGSELPALE
                     RICQELAAAAQPFRRLEASQDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGMLVDLC
                     RGPHLRHTGQIGGLKLLSNSSSLWRFSGTPETLQRVSGISFPTAEELRAWEEWREEAE
                     LRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNVLVAFIRAEYTRRGFSEVKTPTL
                     FSTKLWELSGHWEHYREDMFALQPPGSDSHAGSQSDHSTSHPTGTLALKPMNCPAHCL
                     MFAHRPRSWRELPLRLADFGALHRAEASGSLGGLTRLRRFQQDDAHIFCAPDQLEAEI
                     RGCLDFLRSVYTVLGFSFSLALSTRPSGFLGEPCLWDQAEQVLQQALEEFGEPWDLNP
                     GDGAFYGPKIDVHLRDALGRPHQCGTIQLDFQLPLRFDLQYKGQAGALERPVLIHRAV
                     LGSVERMLGVLAESCGGKWPLWLSPFQVVVIPVGTEQEEYAREAQRSLQAAGLVGDLD
                     ADSGLTLGRRIRRAQLAHYNFQFVVGQKEQSKRTVNVRTRDNRRLGERDLVEAIQRLL
                     ELQNTRVPNAEEIF"
     misc_feature    <321..1940
                     /gene="TARS2"
                     /note="threonyl-tRNA synthetase; Region: PLN02908"
                     /db_xref="CDD:178496"
ORIGIN      
        1 ttctaaactg gccgatactg cagtggctgc tcaagtgaat ggagaacctt atgatctgga
       61 gcggccctta gagacagatt ctgacctcag atttctgaca ttcgattctg cagaggggaa
      121 agcagtattc tggcactcca gtacccatgt cctgggggca gcagctgaac aacttctagg
      181 tgctgtcctc tgtcaaggtc caagcacagg atgtggcttt taccatgatt tcttccttgg
      241 aaaggaacgg atttcatccc atggccaaca cccaggtgat gctccttaga ggatggaagc
      301 caaccaaccc tcatctttcc aggacaatca aaggctcaga gctgcctgct ttggaacgga
      361 tttgtcagga acttgcagct gctgctcaac ccttccggag actagaggct tcccaggatc
      421 agcttcggca gctcttcaag gataacccct ttaagcttca cctgatcgag gagaaagtga
      481 caggtccaac ggcaacagta tatgggtgtg gtatgttggt tgatctgtgc agaggccccc
      541 accttcgtca tactggacag attggaggcc tgaagctgct atcgaactca tcatccttat
      601 ggaggttttc tggcacccca gagacactgc agagagtgtc agggatttcc ttccccactg
      661 cagaggagct gagggcctgg gaagagtgga gggaggaagc agagttacgg gaccaccggc
      721 gcattgggaa ggaacaggag ctcttcttct tccatgaact gagccccggg agctgcttct
      781 tcctgcctcg agggacaagg gtgtataatg tactcgtggc ttttatcagg gccgagtaca
      841 cccgccgtgg tttctcagaa gtgaaaaccc ccacgttgtt ttctacgaaa ctctgggaac
      901 tgtcagggca ctgggagcat taccgggaag acatgtttgc cctgcagccc ccaggctctg
      961 acagccatgc cggctcccag agtgaccact ctaccagcca tcccacaggc acgcttgccc
     1021 tcaagcccat gaactgccct gcgcactgcc tgatgttcgc ccaccggccc agatcctggc
     1081 gagagctgcc cctgcgactg gccgacttcg gggccttgca ccgggccgag gcctctggca
     1141 gtctgggggg actgacccgg ctgcggcgct tccagcaaga tgacgctcac atcttctgtg
     1201 cacccgatca gctggaagca gagatccgag gctgtcttga tttcctccgc tctgtctaca
     1261 ctgtccttgg gttctccttc agcttggcac tgtctacccg gccatctggc ttcctgggag
     1321 agccttgcct ttgggaccag gctgagcagg tccttcaaca ggccctagaa gaatttggag
     1381 aaccctggga cctcaaccct ggagatggtg ccttctatgg gcctaagatt gacgtgcacc
     1441 tccgcgatgc cctgggtcgg ccccatcagt gtgggacaat ccagcttgac ttccagctgc
     1501 ccctgagatt tgacctccag tacaaggggc aggcgggggc cctggagcgt ccagtcctca
     1561 ttcatcgagc agtgctaggt tctgtggaaa ggatgttggg agtgctggcg gaaagctgcg
     1621 ggggaaaatg gccactatgg ctgtcaccat tccaggtggt ggtcatacct gtgggaactg
     1681 agcaagagga atatgccagg gaggcacagc ggagcctgca agctgcagga ctggttggcg
     1741 acctggatgc tgactccgga ctgaccctcg gccggaggat ccgccgggct cagcttgccc
     1801 actacaattt tcagttcgtg gttggccaga aagagcagag taagagaaca gtgaacgttc
     1861 ggactcgaga taatcgtcga cttggggaac gagacttggt cgaggctata cagcggctac
     1921 tggagctaca gaacaccagg gtcccaaatg ctgaagaaat tttctgagct tttgtgtaca
     1981 gatgtggcaa agacctgtag gagctatcag gcccccttaa cacggagggg cccaacctaa
     2041 ctgacaagag tctgaagtcc cccagacccc tcagaactcg tgtggaggca tgaatctgct
     2101 ctcatgaaaa gagatttggt ctgggggaag ctgtagctgt ttggatgtga ggagagtgaa
     2161 actaaaaata ataaacttga agttactggg aatgtgtctt catctctaac tcctggtggg
     2221 gacataaaag ggagtttgac tctgtctccc actcttttgt cctagggggt tggggtaatt
     2281 gaaaaggggc tctcactggt cggggagctc cctgggatag ctgtcctgtt cccctgtcta
     2341 aactcctcag tgccctgttt ccccagcccc aattcagcag gttgtcagat ccattctcca
     2401 aagaaggcca aatggagaaa ttgaggcaca aaacaaagtc tcagacctct cttgctccag
     2461 gattctcaga atcagtttct cttggggttg ggttcaccat tgttctcaat cctgtcagga
     2521 gccttcaggg tgtgtgggag gagtgtctgc cagaggagga gcagctggga ctgagtcatg
     2581 gccggatgct gaggagggcg gtagctatcc ccagatagac tataaagagg agaaggaacc
     2641 agccctgaag ttcacaacag cagtaacagc aactggagaa gcaggtttcc agaagcccgg
     2701 ctcttcaaat cagatctgcc tgagaggacc tacgtgggtg gccactgacc agtccttgcc
     2761 ccaggatggg gaccacgtcc ggagcagcct tggtcttggc ctgtttagct gttgcttctg
     2821 tagcctctaa gagaggcatc aaggcttcag ggcagaggga gctggggcca gtgcacctca
     2881 cccacccact tcaagaaggt aagagtttgg gggagtggca tgggattggg gttccaggag
     2941 gaaatgtagg ctctgaccat ctcccttctt gccagtagtt ggctatgctg cacccccttc
     3001 cccacctctg accagagctc tcgccatgga tcaccccgac acctctcagc atagccctca
     3061 ctttgaagga cagagtgaag gtaagtctca gttgcacctc taggtttcta gtctgactta
     3121 cttcctgatc ttcagaatgg gaggggaaga aggagtgggc tacttaacac actctgcttt
     3181 ctgtagtaca gccatctcca tctcagaaag ccatccctgt ccaagaggag ctgccccctc
     3241 cccaactccc tgtggaaaag aaaggtgagt gcctgccctt tccctcactt ccacccacta
     3301 catcttgctg acatcagcct gagccttgct cttttgtgtc ctcatcccta tcttgcagag
     3361 gatctgcctc tccctcaaga ggccgtcacc ctacaagaag agctgtcccc tccccaggtc
     3421 cctattgaac agaaggaagg taagtgactc cttcccctct ttaccctcct gcctacccgt
     3481 ggctgacagc atgggctttg gggcttctgc cacttactag ctgtgtaata accttgggta
     3541 agttacctct ctaagcctta gttcatttgt aaaattgggg aaataatacc tattttataa
     3601 aattataaga ttacatgaca caaaagtagc atttactttc acttctctat tgagttactt
     3661 ttttttttta aagcatatgc tatttctttt tttttaaatt ttatttattg attgattttg
     3721 ggctgtgttg ggtctttgtt gcggcacgca ggatctctgt tgaggcatgc gggatctttc
     3781 gttgcagcat gcaggtttct ctctagttgt ggcgtgcggg tttttttctc ttttctagct
     3841 gtggcgcata ggctccaggg cacatgggct ctgtagttgt ggtgcgcagg ttccagaatg
     3901 cgtgggctct ctagttgagg cgtgcgagct cagtagttgt ggcatgcagg tttagttgcc
     3961 gtgtggcatg taggatctta gttccctgac cggggatcga acccgcgtcc cctgcattgg
     4021 aaggcggatt ctttaccact ggaccaccag gaaagtccct ctattgagtt actttttatg
     4081 aatgggaact ggcctgtctt ctagagatgc ccgtcccaac atgaatgttg ttttacgcat
     4141 ctccttctac cccagtagac ccatctttcc tttatcaaga ggagatgacc ttccaatcta
     4201 aacacagaga gagtgacagc tttagtctgt ccatccccca gctttaatgc tcagaccctg
     4261 gtcggggtag tggggtgggg gagcaggtat tctgagcctt gggaagcagc aaagggagca
     4321 ggcgtgattc agggtcaggg agctataagg gtgacacctt tcatgactca ggtctcttcc
     4381 ttttggtcag tcattctgaa gttaagagcc acgaattcat ttgtcccctt ttcctctata
     4441 tcctcccaac actttctcct caaccccaac ttctttcaat cctcccaact caatccagcc
     4501 tttctctatc cctctgcatg ttcccccttc ccactctgtt ctccccattc tagaaaagct
     4561 ggctcccttc atggaccaca gccccccaga gcctgagtct tcgaatccag cccagcactg
     4621 ccaacagggc ggacaccaag gtggctgggg ccaccggctg gatggcttcc cccctgggcg
     4681 gccttctccg gacaatctgg accagatctg ccttcctaat cgtcagcatg tggtgtacgg
     4741 cccttggaac ctgccacaga ctggcttttc ccaccttgtt cgtcagggtg agaccctcaa
     4801 tttgctggag actggatatt cccgctgctg ccgctgtcac agctacacaa accgcttgga
     4861 ctgtgcgaaa gtcacggtaa gggttgggct cttgatcctg gggatgtcct ttaaccccca
     4921 gacagtatgt gtgtgtttcg aggactagag gcctaggcct gggtatgcag gaacctcagg
     4981 tccctttcat tggccctacc ttgggcctcc tcattgtgcc agaagagcag aggacagcct
     5041 ctgcctcttt attatctgca tacccagggt cctttttgga gcctgggagg aaaacaggta
     5101 tgtggagagt gggctaccag gctgatctac tcctcttgct ctagtgggaa gacgcaatga
     5161 cccggttctg tgaggctgag ttttctgtta agacccgacc ccattggtgc tgcaaacgtc
     5221 agggggaggc tcgattctcc tgcttccaag atgaagctcc ctggccacac taccagctcc
     5281 aggcctgccc cagccaccag cctggtattt cctcgggtcc tgagctgcct tttccccctg
     5341 ggctacccac actggacaat atcaagaaca tctgccacct aagacgcttc tgctctgtgc
     5401 cacgcaacct cccagctact gaccccatcc agaggcagct gcaggctctg acccagctgg
     5461 agggggagtt ccagcactgc tgccggcagg ggaacaacca cacctgtaca tggaaggcct
     5521 ggaaggatac ccttgatggc tactgtgatc aggaaaaggc tacaaatacc caccactact
     5581 catgttgcca ctaccctcct agtcctgccc gagatgagtg ctttgcccgg caggctccct
     5641 atcccaacta tgaccgggac atcttgaccc tggacctcag ccgaatcacc cccaacttca
     5701 tgagtcatct ctgtggaaat caaggagttt tcaccaagca gtgagtcttg cccagttctt
     5761 tcccaactct tttcccttct ccaaaacgtc ccttttgggg caccctctgg ggcactcttg
     5821 ggaagagcaa aatcatggtc tgcaagcacc attttgatgc ctggagacac ccaaagaccc
     5881 tgacccctac ctgtttccca ccaacatagt aagcagattc ctgggctgat ccagaacgtg
     5941 actgcccgct gctgtgacct gccgtttcca gagcaggcct gctgtgctga ggaggaggtg
     6001 agtgtgaggg cagggggtca tagtctccag aggaacgcag aggaggggag agagagggct
     6061 ggaactgcag gatacccctt cttttagtac ctcaaaccag cccatagaaa taatgaggac
     6121 tactggggag atcttttttc ttggttccag gagtcttcac ttctgacctg acctgctcgc
     6181 catctctaag tgcctattat gtcttctctg ggcctctagc ttctggcatt tccagatgtt
     6241 cacatctgtc catcacaagg agtctagctg tggaaggcag cctggtactc tctctgagcc
     6301 ccagaaggga tctagggaga gagcagtaga aactgaggga agggggactt tggacatcca
     6361 agtaaccagg cctgacctct gacaaccttc ctcccctatc gtgtccgctt tactccttca
     6421 tcagaaatca tcctttattg ataacctgtg tggtccccga cgtaacttct ggcgagactc
     6481 tgccttctgc tgtaaactga gtcctgggga tgaacagatc aactgcttca acactaatta
     6541 tctgaggaat gtggctctag tggctggaga cattagggat gccaaggacc agagggagca
     6601 gggcccaact tggggaacaa atatcagccc cacccctgag cccaaggaag agtgagtcac
     6661 cccagagcct tggaggatca gattggggga ccccatcgca ccctcctgga atactcatta
     6721 cagtaaacac ctcttggatt tgg
//
LOCUS       XM_032603769            4110 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus extracellular matrix protein 1 (ECM1),
            transcript variant X1, mRNA.
ACCESSION   XM_032603769
VERSION     XM_032603769.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4110
                     /gene="ECM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 2 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739474"
     CDS             113..1747
                     /gene="ECM1"
                     /codon_start=1
                     /product="extracellular matrix protein 1 isoform X1"
                     /protein_id="XP_032459660.1"
                     /db_xref="GeneID:116739474"
                     /translation="MGTTSGAALVLACLAVASVASKRGIKASGQRELGPVHLTHPLQE
                     VVGYAAPPSPPLTRALAMDHPDTSQHSPHFEGQSEVQPSPSQKAIPVQEELPPPQLPV
                     EKKEDLPLPQEAVTLQEELSPPQVPIEQKEEKLAPFMDHSPPEPESSNPAQHCQQGGH
                     QGGWGHRLDGFPPGRPSPDNLDQICLPNRQHVVYGPWNLPQTGFSHLVRQGETLNLLE
                     TGYSRCCRCHSYTNRLDCAKVTWEDAMTRFCEAEFSVKTRPHWCCKRQGEARFSCFQD
                     EAPWPHYQLQACPSHQPGISSGPELPFPPGLPTLDNIKNICHLRRFCSVPRNLPATDP
                     IQRQLQALTQLEGEFQHCCRQGNNHTCTWKAWKDTLDGYCDQEKATNTHHYSCCHYPP
                     SPARDECFARQAPYPNYDRDILTLDLSRITPNFMSHLCGNQGVFTKHKQIPGLIQNVT
                     ARCCDLPFPEQACCAEEEKSSFIDNLCGPRRNFWRDSAFCCKLSPGDEQINCFNTNYL
                     RNVALVAGDIRDAKDQREQGPTWGTNISPTPEPKEE"
     misc_feature    248..1744
                     /gene="ECM1"
                     /note="Extracellular matrix protein 1 (ECM1); Region:
                     ECM1; pfam05782"
                     /db_xref="CDD:461739"
ORIGIN      
        1 acaacagcag taacagcaac tggagaagca ggtttccaga agcccggctc ttcaaatcag
       61 atctgcctga gaggacctac gtgggtggcc actgaccagt ccttgcccca ggatggggac
      121 cacgtccgga gcagccttgg tcttggcctg tttagctgtt gcttctgtag cctctaagag
      181 aggcatcaag gcttcagggc agagggagct ggggccagtg cacctcaccc acccacttca
      241 agaagtagtt ggctatgctg cacccccttc cccacctctg accagagctc tcgccatgga
      301 tcaccccgac acctctcagc atagccctca ctttgaagga cagagtgaag tacagccatc
      361 tccatctcag aaagccatcc ctgtccaaga ggagctgccc cctccccaac tccctgtgga
      421 aaagaaagag gatctgcctc tccctcaaga ggccgtcacc ctacaagaag agctgtcccc
      481 tccccaggtc cctattgaac agaaggaaga aaagctggct cccttcatgg accacagccc
      541 cccagagcct gagtcttcga atccagccca gcactgccaa cagggcggac accaaggtgg
      601 ctggggccac cggctggatg gcttcccccc tgggcggcct tctccggaca atctggacca
      661 gatctgcctt cctaatcgtc agcatgtggt gtacggccct tggaacctgc cacagactgg
      721 cttttcccac cttgttcgtc agggtgagac cctcaatttg ctggagactg gatattcccg
      781 ctgctgccgc tgtcacagct acacaaaccg cttggactgt gcgaaagtca cgtgggaaga
      841 cgcaatgacc cggttctgtg aggctgagtt ttctgttaag acccgacccc attggtgctg
      901 caaacgtcag ggggaggctc gattctcctg cttccaagat gaagctccct ggccacacta
      961 ccagctccag gcctgcccca gccaccagcc tggtatttcc tcgggtcctg agctgccttt
     1021 tccccctggg ctacccacac tggacaatat caagaacatc tgccacctaa gacgcttctg
     1081 ctctgtgcca cgcaacctcc cagctactga ccccatccag aggcagctgc aggctctgac
     1141 ccagctggag ggggagttcc agcactgctg ccggcagggg aacaaccaca cctgtacatg
     1201 gaaggcctgg aaggataccc ttgatggcta ctgtgatcag gaaaaggcta caaataccca
     1261 ccactactca tgttgccact accctcctag tcctgcccga gatgagtgct ttgcccggca
     1321 ggctccctat cccaactatg accgggacat cttgaccctg gacctcagcc gaatcacccc
     1381 caacttcatg agtcatctct gtggaaatca aggagttttc accaagcata agcagattcc
     1441 tgggctgatc cagaacgtga ctgcccgctg ctgtgacctg ccgtttccag agcaggcctg
     1501 ctgtgctgag gaggagaaat catcctttat tgataacctg tgtggtcccc gacgtaactt
     1561 ctggcgagac tctgccttct gctgtaaact gagtcctggg gatgaacaga tcaactgctt
     1621 caacactaat tatctgagga atgtggctct agtggctgga gacattaggg atgccaagga
     1681 ccagagggag cagggcccaa cttggggaac aaatatcagc cccacccctg agcccaagga
     1741 agagtgagtc accccagagc cttggaggat cagattgggg gaccccatcg caccctcctg
     1801 gaatactcat tacagtaaac acctcttgga tttggcctca ttgtgtctgt tgtctcacac
     1861 aaacacaccc tcctaagcct gcccgatttt cttcagtgtc tggcccctga ggcccactgc
     1921 cccaccccca ctaactgagc tgaagtcttt ccacaggctt tgttgggacc aaaactaaat
     1981 ggtttaactt cagtgtttgt catcttgaat ttattcacac atttaaaagg aatgtcactt
     2041 tgttagctgg ctatcaggat tcagaagtga aaaagatatg attcatgtct ttggtgagcc
     2101 cccgaaatgc acagtcctgc ctgacatttt ttaatcttcc cttctgatcc ttggagtcca
     2161 tgtgtttatt cattcagtat acattgattg aactgtcgat gtgcactgtg ctagactgca
     2221 ggatacacat tcggaaaaca tacagttcct tccttcaggt tgctcacatt ccaggaacct
     2281 agcaggtgtg attagtgttg tggtacaggg ctgccagagt gccagtatgc tcagagcact
     2341 tgataaccgg gccagagctg ggagtagggg ctgggggcag taggggtgca ccagggaagg
     2401 cctctgcagg ggtgaggtcg gagcttctcc aggagaagta gagggtacga gaggcaggta
     2461 cggaccaggc gaaggggcaa ctcatgcaga agcacaaagg ctgaaaggac ctgacggtgg
     2521 ttgttcctcc cagatgagtc tggaaagatg agcaggagct catcacgaat gactcatctg
     2581 cccggcttaa agggcctctt ggcacctctg cccgctaggg caccggtggt ttcaagcaga
     2641 atatgtgttc acatttgcct tttaggatgt ctagtcggca gccagccagg caggtacctg
     2701 ggaggccagt tcggacagtg tcgtgccaat gcctgagggg agggcgccgt agcacccaga
     2761 ccggagctag accacagggt ggcgggaccc tgcggccctt cgaggttgac cacaggaaac
     2821 cggagcctcc aggctggagc tgaaagaact ggaatgaagg cttagtactg tggggactcg
     2881 tcctctgtga ttctgctgcc tggacaactt tccagaaagc aggacgtccc ctgcttatgg
     2941 aggaagaggg cgaaacaggg actgccgtcc ttccccagcc ggggactaga taagccccag
     3001 cagctctaaa actgacaccc gccattccct ccgctcctcc accgcctttt atttatttac
     3061 ttacactttg cccgcatagc agtttttaac ccatcagcgt cttagcagct ccttcgcctg
     3121 tccgtcagca cgagggccaa tgagcgggcg agagacactc cgtgccccgc ccctgcgact
     3181 gcaacccggc cagcgcgggc ctgctctacc ccggccgcgc gctcgcgctc gggtagcgct
     3241 ctcgtagggc gtcagcttct gtgtgcagac gtctgggccc attttttttt ttttttttct
     3301 cggtaggcgg gtctctcact gttgtggcct ctcccgttgc ggagcacagg ctccggacgc
     3361 gcaggctcag cggccatggc tcacgggcct agcggctcac gggcctagcc gctccgcggc
     3421 atgtgggata cttccggacc gggtcacgaa cctgtgtccc ctgcatcggc aggcggactc
     3481 tcaaccactg cgccatcagg gaagccctgg gcccattctg atcgactctg ggcgtcagag
     3541 accgggctgg cagaggcagg gcgcactcct tccccgaccc cgtgcgtccg tccgccctcg
     3601 gtgtactggt ccaaaccagc tcgcggggca gagccccggc cggtggacgg acaggcgggc
     3661 agctccgccg gcagaggcac cactaacggg ctctgtccca acaggagctt cccggagatg
     3721 ctttcgtacg gcatttgcaa agcgccccgc caagtctgga gagggagtcc gagacgagtt
     3781 ggaccacagt cccagccccg aggagttgac agtctaccgg ggaggagagg aaggaaacca
     3841 ggaaagcaat agtaagcagc tatcatgaaa gaatatcaag tgctaaatag atataagcat
     3901 caagaactga gagttaaaag aagtaattat ctgtaggaat cggggtactg ttaaatggag
     3961 gaggtggctt tccacagagc cccgaagcat gaataggatt gctgttagtt accatatggt
     4021 gaacctgtta acacttatgg caattcgttg tatagaaaaa cttaaaatat attaaattca
     4081 atacagtgtt ggatgtcaat tatatctcaa
//
LOCUS       XM_032603777            4087 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus extracellular matrix protein 1 (ECM1),
            transcript variant X2, mRNA.
ACCESSION   XM_032603777
VERSION     XM_032603777.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4087
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4087
                     /gene="ECM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 9 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739474"
     CDS             118..1749
                     /gene="ECM1"
                     /codon_start=1
                     /product="extracellular matrix protein 1 isoform X2"
                     /protein_id="XP_032459668.1"
                     /db_xref="GeneID:116739474"
                     /translation="MGTTSGAALVLACLAVASVASKRGIKASGQRELGPVHLTHPLQE
                     VGYAAPPSPPLTRALAMDHPDTSQHSPHFEGQSEVQPSPSQKAIPVQEELPPPQLPVE
                     KKEDLPLPQEAVTLQEELSPPQVPIEQKEEKLAPFMDHSPPEPESSNPAQHCQQGGHQ
                     GGWGHRLDGFPPGRPSPDNLDQICLPNRQHVVYGPWNLPQTGFSHLVRQGETLNLLET
                     GYSRCCRCHSYTNRLDCAKVTWEDAMTRFCEAEFSVKTRPHWCCKRQGEARFSCFQDE
                     APWPHYQLQACPSHQPGISSGPELPFPPGLPTLDNIKNICHLRRFCSVPRNLPATDPI
                     QRQLQALTQLEGEFQHCCRQGNNHTCTWKAWKDTLDGYCDQEKATNTHHYSCCHYPPS
                     PARDECFARQAPYPNYDRDILTLDLSRITPNFMSHLCGNQGVFTKHKQIPGLIQNVTA
                     RCCDLPFPEQACCAEEEKSSFIDNLCGPRRNFWRDSAFCCKLSPGDEQINCFNTNYLR
                     NVALVAGDIRDAKDQREQGPTWGTNISPTPEPKEE"
     misc_feature    250..1746
                     /gene="ECM1"
                     /note="Extracellular matrix protein 1 (ECM1); Region:
                     ECM1; pfam05782"
                     /db_xref="CDD:461739"
ORIGIN      
        1 agttcacaac agcagtaaca gcaactggag aagcaggttt ccagaagccc ggctcttcaa
       61 atcagatctg cctgagagga cctacgtggg tggccactga ccagtccttg ccccaggatg
      121 gggaccacgt ccggagcagc cttggtcttg gcctgtttag ctgttgcttc tgtagcctct
      181 aagagaggca tcaaggcttc agggcagagg gagctggggc cagtgcacct cacccaccca
      241 cttcaagaag ttggctatgc tgcaccccct tccccacctc tgaccagagc tctcgccatg
      301 gatcaccccg acacctctca gcatagccct cactttgaag gacagagtga agtacagcca
      361 tctccatctc agaaagccat ccctgtccaa gaggagctgc cccctcccca actccctgtg
      421 gaaaagaaag aggatctgcc tctccctcaa gaggccgtca ccctacaaga agagctgtcc
      481 cctccccagg tccctattga acagaaggaa gaaaagctgg ctcccttcat ggaccacagc
      541 cccccagagc ctgagtcttc gaatccagcc cagcactgcc aacagggcgg acaccaaggt
      601 ggctggggcc accggctgga tggcttcccc cctgggcggc cttctccgga caatctggac
      661 cagatctgcc ttcctaatcg tcagcatgtg gtgtacggcc cttggaacct gccacagact
      721 ggcttttccc accttgttcg tcagggtgag accctcaatt tgctggagac tggatattcc
      781 cgctgctgcc gctgtcacag ctacacaaac cgcttggact gtgcgaaagt cacgtgggaa
      841 gacgcaatga cccggttctg tgaggctgag ttttctgtta agacccgacc ccattggtgc
      901 tgcaaacgtc agggggaggc tcgattctcc tgcttccaag atgaagctcc ctggccacac
      961 taccagctcc aggcctgccc cagccaccag cctggtattt cctcgggtcc tgagctgcct
     1021 tttccccctg ggctacccac actggacaat atcaagaaca tctgccacct aagacgcttc
     1081 tgctctgtgc cacgcaacct cccagctact gaccccatcc agaggcagct gcaggctctg
     1141 acccagctgg agggggagtt ccagcactgc tgccggcagg ggaacaacca cacctgtaca
     1201 tggaaggcct ggaaggatac ccttgatggc tactgtgatc aggaaaaggc tacaaatacc
     1261 caccactact catgttgcca ctaccctcct agtcctgccc gagatgagtg ctttgcccgg
     1321 caggctccct atcccaacta tgaccgggac atcttgaccc tggacctcag ccgaatcacc
     1381 cccaacttca tgagtcatct ctgtggaaat caaggagttt tcaccaagca taagcagatt
     1441 cctgggctga tccagaacgt gactgcccgc tgctgtgacc tgccgtttcc agagcaggcc
     1501 tgctgtgctg aggaggagaa atcatccttt attgataacc tgtgtggtcc ccgacgtaac
     1561 ttctggcgag actctgcctt ctgctgtaaa ctgagtcctg gggatgaaca gatcaactgc
     1621 ttcaacacta attatctgag gaatgtggct ctagtggctg gagacattag ggatgccaag
     1681 gaccagaggg agcagggccc aacttgggga acaaatatca gccccacccc tgagcccaag
     1741 gaagagtgag tcaccccaga gccttggagg atcagattgg gggaccccat cgcaccctcc
     1801 tggaatactc attacagtaa acacctcttg gatttggcct cattgtgtct gttgtctcac
     1861 acaaacacac cctcctaagc ctgcccgatt ttcttcagtg tctggcccct gaggcccact
     1921 gccccacccc cactaactga gctgaagtct ttccacaggc tttgttggga ccaaaactaa
     1981 atggtttaac ttcagtgttt gtcatcttga atttattcac acatttaaaa ggaatgtcac
     2041 tttgttagct ggctatcagg attcagaagt gaaaaagata tgattcatgt ctttggtgag
     2101 cccccgaaat gcacagtcct gcctgacatt ttttaatctt cccttctgat ccttggagtc
     2161 catgtgttta ttcattcagt atacattgat tgaactgtcg atgtgcactg tgctagactg
     2221 caggatacac attcggaaaa catacagttc cttccttcag gttgctcaca ttccaggaac
     2281 ctagcaggtg tgattagtgt tgtggtacag ggctgccaga gtgccagtat gctcagagca
     2341 cttgataacc gggccagagc tgggagtagg ggctgggggc agtaggggtg caccagggaa
     2401 ggcctctgca ggggtgaggt cggagcttct ccaggagaag tagagggtac gagaggcagg
     2461 tacggaccag gcgaaggggc aactcatgca gaagcacaaa ggctgaaagg acctgacggt
     2521 ggttgttcct cccagatgag tctggaaaga tgagcaggag ctcatcacga atgactcatc
     2581 tgcccggctt aaagggcctc ttggcacctc tgcccgctag ggcaccggtg gtttcaagca
     2641 gaatatgtgt tcacatttgc cttttaggat gtctagtcgg cagccagcca ggcaggtacc
     2701 tgggaggcca gttcggacag tgtcgtgcca atgcctgagg ggagggcgcc gtagcaccca
     2761 gaccggagct agaccacagg gtggcgggac cctgcggccc ttcgaggttg accacaggaa
     2821 accggagcct ccaggctgga gctgaaagaa ctggaatgaa ggcttagtac tgtggggact
     2881 cgtcctctgt gattctgctg cctggacaac tttccagaaa gcaggacgtc ccctgcttat
     2941 ggaggaagag ggcgaaacag ggactgccgt ccttccccag ccggggacta gataagcccc
     3001 agcagctcta aaactgacac ccgccattcc ctccgctcct ccaccgcctt ttatttattt
     3061 acttacactt tgcccgcata gcagttttta acccatcagc gtcttagcag ctccttcgcc
     3121 tgtccgtcag cacgagggcc aatgagcggg cgagagacac tccgtgcccc gcccctgcga
     3181 ctgcaacccg gccagcgcgg gcctgctcta ccccggccgc gcgctcgcgc tcgggtagcg
     3241 ctctcgtagg gcgtcagctt ctgtgtgcag acgtctgggc ccattttttt tttttttttt
     3301 ctcggtaggc gggtctctca ctgttgtggc ctctcccgtt gcggagcaca ggctccggac
     3361 gcgcaggctc agcggccatg gctcacgggc ctagcggctc acgggcctag ccgctccgcg
     3421 gcatgtggga tacttccgga ccgggtcacg aacctgtgtc ccctgcatcg gcaggcggac
     3481 tctcaaccac tgcgccatca gggaagccct gggcccattc tgatcgactc tgggcgtcag
     3541 agaccgggct ggcagaggca gggcgcactc cttccccgac cccgtgcgtc cgtccgccct
     3601 cggtgtactg gtccaaacca gctcgcgggg cagagccccg gccggtggac ggacaggcgg
     3661 gcagctccgc cggcagaggc accactaacg ggctctgtcc caacaggagc ttcccggaga
     3721 tgctttcgta cggcatttgc aaagcgcccc gccaagtctg gagagggagt ccgagacgag
     3781 ttggaccaca gtcccagccc cgaggagttg acagtctacc ggggaggaga ggaaggaaac
     3841 caggaaagca atagtaagca gctatcatga aagaatatca agtgctaaat agatataagc
     3901 atcaagaact gagagttaaa agaagtaatt atctgtagga atcggggtac tgttaaatgg
     3961 aggaggtggc tttccacaga gccccgaagc atgaatagga ttgctgttag ttaccatatg
     4021 gtgaacctgt taacacttat ggcaattcgt tgtatagaaa aacttaaaat atattaaatt
     4081 caataca
//
LOCUS       XM_032603785            3736 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus extracellular matrix protein 1 (ECM1),
            transcript variant X3, mRNA.
ACCESSION   XM_032603785
VERSION     XM_032603785.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3736
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3736
                     /gene="ECM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 4 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739474"
     CDS             117..1373
                     /gene="ECM1"
                     /codon_start=1
                     /product="extracellular matrix protein 1 isoform X3"
                     /protein_id="XP_032459676.1"
                     /db_xref="GeneID:116739474"
                     /translation="MGTTSGAALVLACLAVASVASKRGIKASGQRELGPVHLTHPLQE
                     VGYAAPPSPPLTRALAMDHPDTSQHSPHFEGQSEVQPSPSQKAIPVQEELPPPQLPVE
                     KKEDLPLPQEAVTLQEELSPPQVPIEQKEEKLAPFMDHSPPEPESSNPAQHCQQGGHQ
                     GGWGHRLDGFPPGRPSPDNLDQICLPNRQHVVYGPWNLPQTGFSHLVRQGETLNLLET
                     GYSRCCRCHSYTNRLDCAKVTWKDTLDGYCDQEKATNTHHYSCCHYPPSPARDECFAR
                     QAPYPNYDRDILTLDLSRITPNFMSHLCGNQGVFTKHKQIPGLIQNVTARCCDLPFPE
                     QACCAEEEKSSFIDNLCGPRRNFWRDSAFCCKLSPGDEQINCFNTNYLRNVALVAGDI
                     RDAKDQREQGPTWGTNISPTPEPKEE"
     misc_feature    249..1370
                     /gene="ECM1"
                     /note="Extracellular matrix protein 1 (ECM1); Region:
                     ECM1; pfam05782"
                     /db_xref="CDD:461739"
ORIGIN      
        1 gttcacaaca gcagtaacag caactggaga agcaggtttc cagaagcccg gctcttcaaa
       61 tcagatctgc ctgagaggac ctacgtgggt ggccactgac cagtccttgc cccaggatgg
      121 ggaccacgtc cggagcagcc ttggtcttgg cctgtttagc tgttgcttct gtagcctcta
      181 agagaggcat caaggcttca gggcagaggg agctggggcc agtgcacctc acccacccac
      241 ttcaagaagt tggctatgct gcaccccctt ccccacctct gaccagagct ctcgccatgg
      301 atcaccccga cacctctcag catagccctc actttgaagg acagagtgaa gtacagccat
      361 ctccatctca gaaagccatc cctgtccaag aggagctgcc ccctccccaa ctccctgtgg
      421 aaaagaaaga ggatctgcct ctccctcaag aggccgtcac cctacaagaa gagctgtccc
      481 ctccccaggt ccctattgaa cagaaggaag aaaagctggc tcccttcatg gaccacagcc
      541 ccccagagcc tgagtcttcg aatccagccc agcactgcca acagggcgga caccaaggtg
      601 gctggggcca ccggctggat ggcttccccc ctgggcggcc ttctccggac aatctggacc
      661 agatctgcct tcctaatcgt cagcatgtgg tgtacggccc ttggaacctg ccacagactg
      721 gcttttccca ccttgttcgt cagggtgaga ccctcaattt gctggagact ggatattccc
      781 gctgctgccg ctgtcacagc tacacaaacc gcttggactg tgcgaaagtc acgtggaagg
      841 atacccttga tggctactgt gatcaggaaa aggctacaaa tacccaccac tactcatgtt
      901 gccactaccc tcctagtcct gcccgagatg agtgctttgc ccggcaggct ccctatccca
      961 actatgaccg ggacatcttg accctggacc tcagccgaat cacccccaac ttcatgagtc
     1021 atctctgtgg aaatcaagga gttttcacca agcataagca gattcctggg ctgatccaga
     1081 acgtgactgc ccgctgctgt gacctgccgt ttccagagca ggcctgctgt gctgaggagg
     1141 agaaatcatc ctttattgat aacctgtgtg gtccccgacg taacttctgg cgagactctg
     1201 ccttctgctg taaactgagt cctggggatg aacagatcaa ctgcttcaac actaattatc
     1261 tgaggaatgt ggctctagtg gctggagaca ttagggatgc caaggaccag agggagcagg
     1321 gcccaacttg gggaacaaat atcagcccca cccctgagcc caaggaagag tgagtcaccc
     1381 cagagccttg gaggatcaga ttgggggacc ccatcgcacc ctcctggaat actcattaca
     1441 gtaaacacct cttggatttg gcctcattgt gtctgttgtc tcacacaaac acaccctcct
     1501 aagcctgccc gattttcttc agtgtctggc ccctgaggcc cactgcccca cccccactaa
     1561 ctgagctgaa gtctttccac aggctttgtt gggaccaaaa ctaaatggtt taacttcagt
     1621 gtttgtcatc ttgaatttat tcacacattt aaaaggaatg tcactttgtt agctggctat
     1681 caggattcag aagtgaaaaa gatatgattc atgtctttgg tgagcccccg aaatgcacag
     1741 tcctgcctga cattttttaa tcttcccttc tgatccttgg agtccatgtg tttattcatt
     1801 cagtatacat tgattgaact gtcgatgtgc actgtgctag actgcaggat acacattcgg
     1861 aaaacataca gttccttcct tcaggttgct cacattccag gaacctagca ggtgtgatta
     1921 gtgttgtggt acagggctgc cagagtgcca gtatgctcag agcacttgat aaccgggcca
     1981 gagctgggag taggggctgg gggcagtagg ggtgcaccag ggaaggcctc tgcaggggtg
     2041 aggtcggagc ttctccagga gaagtagagg gtacgagagg caggtacgga ccaggcgaag
     2101 gggcaactca tgcagaagca caaaggctga aaggacctga cggtggttgt tcctcccaga
     2161 tgagtctgga aagatgagca ggagctcatc acgaatgact catctgcccg gcttaaaggg
     2221 cctcttggca cctctgcccg ctagggcacc ggtggtttca agcagaatat gtgttcacat
     2281 ttgcctttta ggatgtctag tcggcagcca gccaggcagg tacctgggag gccagttcgg
     2341 acagtgtcgt gccaatgcct gaggggaggg cgccgtagca cccagaccgg agctagacca
     2401 cagggtggcg ggaccctgcg gcccttcgag gttgaccaca ggaaaccgga gcctccaggc
     2461 tggagctgaa agaactggaa tgaaggctta gtactgtggg gactcgtcct ctgtgattct
     2521 gctgcctgga caactttcca gaaagcagga cgtcccctgc ttatggagga agagggcgaa
     2581 acagggactg ccgtccttcc ccagccgggg actagataag ccccagcagc tctaaaactg
     2641 acacccgcca ttccctccgc tcctccaccg ccttttattt atttacttac actttgcccg
     2701 catagcagtt tttaacccat cagcgtctta gcagctcctt cgcctgtccg tcagcacgag
     2761 ggccaatgag cgggcgagag acactccgtg ccccgcccct gcgactgcaa cccggccagc
     2821 gcgggcctgc tctaccccgg ccgcgcgctc gcgctcgggt agcgctctcg tagggcgtca
     2881 gcttctgtgt gcagacgtct gggcccattt tttttttttt ttttctcggt aggcgggtct
     2941 ctcactgttg tggcctctcc cgttgcggag cacaggctcc ggacgcgcag gctcagcggc
     3001 catggctcac gggcctagcg gctcacgggc ctagccgctc cgcggcatgt gggatacttc
     3061 cggaccgggt cacgaacctg tgtcccctgc atcggcaggc ggactctcaa ccactgcgcc
     3121 atcagggaag ccctgggccc attctgatcg actctgggcg tcagagaccg ggctggcaga
     3181 ggcagggcgc actccttccc cgaccccgtg cgtccgtccg ccctcggtgt actggtccaa
     3241 accagctcgc ggggcagagc cccggccggt ggacggacag gcgggcagct ccgccggcag
     3301 aggcaccact aacgggctct gtcccaacag gagcttcccg gagatgcttt cgtacggcat
     3361 ttgcaaagcg ccccgccaag tctggagagg gagtccgaga cgagttggac cacagtccca
     3421 gccccgagga gttgacagtc taccggggag gagaggaagg aaaccaggaa agcaatagta
     3481 agcagctatc atgaaagaat atcaagtgct aaatagatat aagcatcaag aactgagagt
     3541 taaaagaagt aattatctgt aggaatcggg gtactgttaa atggaggagg tggctttcca
     3601 cagagccccg aagcatgaat aggattgctg ttagttacca tatggtgaac ctgttaacac
     3661 ttatggcaat tcgttgtata gaaaaactta aaatatatta aattcaatac agtgttggat
     3721 gtcaattata tctcaa
//
LOCUS       XM_032603805            1624 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus eukaryotic translation initiation factor
            2B subunit gamma (EIF2B3), mRNA.
ACCESSION   XM_032603805
VERSION     XM_032603805.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                VOSU01000011.1     37246831-37246906   c
            77-233              VOSU01000011.1     37241024-37241180   c
            234-379             VOSU01000011.1     37235945-37236090   c
            380-490             VOSU01000011.1     37192366-37192476   c
            491-554             VOSU01000011.1     37192301-37192364   c
            555-666             VOSU01000011.1     37179203-37179314   c
            667-756             VOSU01000011.1     37140055-37140144   c
            757-884             VOSU01000011.1     37118526-37118653   c
            885-1075            VOSU01000011.1     37117186-37117376   c
            1076-1153           VOSU01000011.1     37115291-37115368   c
            1154-1302           VOSU01000011.1     37114582-37114730   c
            1303-1406           VOSU01000011.1     37100515-37100618   c
            1407-1624           VOSU01000011.1     37091749-37091966   c
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1624
                     /gene="EIF2B3"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 long SRA reads, 11 Proteins, and 90%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739501"
     CDS             86..1459
                     /gene="EIF2B3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 2 bases at 2 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:542..544,aa:OTHER)
                     /transl_except=(pos:551..553,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: translation initiation
                     factor eIF-2B subunit gamma"
                     /protein_id="XP_032459696.1"
                     /db_xref="GeneID:116739501"
                     /translation="MEFQAVVMAVGGGSRMTDLTSGIPKPLLPVGNKPLIWYPLNLLE
                     RIGFEEVIVITTRDVQKALCADFNMKMKLDIVCIPDEADMGTADSLRHIYQKLKTDVL
                     VLSCDLITDVALHEVVDLFRAHDASLAMLMRKGQDGLEPVPGQKGRKKSRXGDXMEQR
                     DFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVD
                     FLMENKSITSIRSELIPYLVRKQFSSASSQQGQEEKEEDLKKKELKSLDIYSFIKEAN
                     TLTFAPYDACWNACRGDSWEDLSRSQVRCYVHIMKEGLCSRVSTLGLYMEANRQVSKL
                     LPVICPEESLVHSSAQIVSKHLVGVDSLIGPDTQVGEKSSIKHSVIGSSCVIRDRVTV
                     TSCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKNCLIGSSQRIEAKAKRVNEVIVG
                     NDQLMEI"
     misc_feature    92..736
                     /gene="EIF2B3"
                     /note="The N-terminal domain of gamma subunit of the
                     eIF-2B is a subfamily of glycosyltransferase 2; Region:
                     eIF-2B_gamma_N; cd04198"
                     /db_xref="CDD:133041"
     misc_feature    1169..1411
                     /gene="EIF2B3"
                     /note="eIF-2B gamma subunit, C-terminal Left-handed
                     parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic
                     translation initiator, a guanine nucleotide exchange
                     factor (GEF) composed of five different subunits (alpha,
                     beta, gamma, delta and epsilon). eIF2B is...; Region:
                     LbH_eIF2B_gamma_C; cd04652"
                     /db_xref="CDD:100057"
ORIGIN      
        1 tgcgctcttg ggctgtcagt cggcggcggc gtggggagcc acccgagcga gcggttgtgg
       61 cgcgcgggga cctgagtttg taaaaatgga atttcaagca gtagtaatgg cagttggagg
      121 gggatctcgg atgacagacc tgacttccgg tattcccaaa cctctgcttc cagttgggaa
      181 caaaccttta atttggtacc cattgaatct gcttgaacgt ataggatttg aagaagtcat
      241 tgtcattaca accagggatg tccaaaaggc tctatgtgca gacttcaata tgaaaatgaa
      301 gctagatatt gtgtgtattc ctgatgaagc tgacatggga actgcagatt ctctgcgcca
      361 catatatcag aaacttaaga cagatgtact ggtcctgagc tgtgatctga taacagatgt
      421 tgccttacat gaggtagtgg acctgttcag agctcatgat gcatcgcttg ctatgttaat
      481 gagaaaaggt caagatggct tagaaccagt tccaggtcaa aaggggagaa aaaaaagcag
      541 gtaaggagac tagatggagc agcgggactt cattggagtg gacagcacag gaaagaggct
      601 gctcttcatg gctaatgaag cagacttgga tgaggagctg gtcattaagg gatccatcct
      661 gcagaagcac cctagaatac gtttccacac aggccttgtg gatgcccatc tctactgctt
      721 gaaaaaatac gttgtggact tcctaatgga aaataagtca atcacttcca tccggagcga
      781 actgattcca tacctagtaa gaaaacagtt ctcctcagct tcatcacaac aaggacagga
      841 agaaaaagaa gaggatctaa agaaaaaaga gctgaaatct ttagatattt acagttttat
      901 aaaagaagcc aatacgctga cctttgctcc ctatgatgcc tgctggaatg cctgtcgagg
      961 agacagctgg gaagatttgt ccaggtcaca ggtgcgctgt tacgtccaca tcatgaaaga
     1021 ggggctctgc tctcgagtga gcaccctagg actctacatg gaagccaaca gacaggtgtc
     1081 caaattgcta cctgttatct gtccggaaga atcactggtc cattcatcag cccagattgt
     1141 cagcaaacac ctggttggag ttgacagcct cattgggcca gatacacagg ttggagagaa
     1201 gtcatccatt aagcactcag tcattggttc atcctgtgtc ataagagata gagtgactgt
     1261 caccagttgc cttctcatga actcagttac cgtggaggaa ggaagcaaca tccagggcag
     1321 cgtcatctgc aacaatgctg taatcgagaa gggagcagac atcaagaact gcctaattgg
     1381 aagcagccag aggattgaag ccaaagccaa acgagtgaat gaggtgatcg tggggaatga
     1441 ccagctcatg gagatctgag ttctgagcaa gtcagactcc ttcctcttgg cccccagaac
     1501 tacagatgtt ggctggccca cctgtttgac tctgtattta tttcccaata aaagaagggc
     1561 tcccaaaggc atgctggaga ctcagggagt agtcccaagc tccacatcaa atgggctcca
     1621 gaga
//
LOCUS       XM_032603816            1661 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TraB domain containing 2B (TRABD2B),
            mRNA.
ACCESSION   XM_032603816
VERSION     XM_032603816.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               VOSU01000011.1     39783668-39783769   c
            103-663             VOSU01000011.1     39781095-39781655   c
            664-810             VOSU01000011.1     39608904-39609050   c
            811-936             VOSU01000011.1     39602282-39602407   c
            937-937             "N"                1-1
            938-985             VOSU01000011.1     39602234-39602281   c
            986-1076            VOSU01000011.1     39581391-39581481   c
            1077-1346           VOSU01000011.1     39577905-39578174   c
            1347-1661           VOSU01000011.1     39569204-39569518   c
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1661
                     /gene="TRABD2B"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins, and 92% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116739508"
     CDS             1..1566
                     /gene="TRABD2B"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: metalloprotease TIKI2"
                     /protein_id="XP_032459707.1"
                     /db_xref="GeneID:116739508"
                     /translation="MHAALAGPLLAALLATARARPQPPDAGQCRPPGSQRDLNSFLWT
                     IRRDPPAYLFGTIHVPYTRVWDFIPDNSKAAFQASARVYFELDLTDPYTISALASCQL
                     LPHGENLQDVLPRELYWRLKRHLDYVKLMMPSWMTPAQRGKGLYADYLFNAIAGNWER
                     KRPVWVMLMVNSLTETDVRSRGVPVLDLYLAQRAEKMKKSTGAVERVEEQCHPLNGLN
                     FSQVLFALNQTLLQHESVRAGSLQAPYTTEDLIKHYNCGDLNAVIFNHDTSQLPNFIN
                     TTLPPHEQVTAQEIDSYFRQELIYKRNERMGKRVMTXLQENEDKICFFAFGAGHFLGN
                     NTVIDVLRQAGLEVEHTPAGQTIHSPVAQSPAPPPEGTSASPAQATPAAAIPAVPSAA
                     PTAPPEEEDPALSPHLLLPDSLSQLEEFGRQKKWHKRQNKPQRPRQFNDLWVRIEDST
                     TASPPPLPFQTTHSSGTAKPPFQLSDPRQQQEEPGLASSAAPSRSQPTLGLLPAIAAS
                     ITAPFLLHTLRLS"
     misc_feature    124..1044
                     /gene="TRABD2B"
                     /note="Tiki homology domain antagonizes Wnt function via
                     cleavage of amino-terminal residues; Region: Tiki;
                     cd14789"
                     /db_xref="CDD:350614"
     misc_feature    <1084..1536
                     /gene="TRABD2B"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 atgcacgccg ccctggcggg gccgttgctc gccgccctcc tcgccaccgc ccgcgcccgc
       61 ccgcagcccc cggacgcagg acagtgccgg ccgcccggat cgcagaggga cctgaactcc
      121 ttcctgtgga ctattcggcg cgacccgcca gcctacctgt ttggcaccat ccacgtcccc
      181 tacacccgcg tctgggactt catcccggac aactccaagg cggccttcca ggccagcgcc
      241 cgcgtctact ttgagctgga cttgacagac ccctacacca tctcggcgct ggccagctgc
      301 cagctgctgc cgcacgggga gaacctgcag gacgtgctgc cccgtgagct ctactggcgc
      361 ctgaagcgcc acctggacta cgtgaagctg atgatgccgt cgtggatgac gcccgcgcag
      421 cggggcaagg ggctctacgc cgactatctg ttcaacgcca tcgcgggcaa ctgggagcgc
      481 aagaggccgg tgtgggtgat gctcatggtg aactcgctca cggagaccga cgtgcgctcc
      541 cggggcgtgc ctgtgcttga cctctacctg gcccagcggg ccgagaagat gaagaagagc
      601 accggggccg tggagcgcgt ggaggagcag tgtcatccgc tcaatgggct caacttctcc
      661 caggtgctgt tcgccctgaa ccagaccctg ctacagcacg agagtgtacg ggccgggagc
      721 ttgcaggcgc cctacaccac cgaggacctc atcaagcact acaactgcgg ggacctcaac
      781 gccgtcatct tcaaccacga cacatcccag ctacccaact ttatcaacac cacccttccg
      841 ccgcacgagc aggtcaccgc ccaggagatc gacagctact tccgccagga gctcatctac
      901 aagaggaatg agcggatggg gaagagggtc atgactnctc tgcaggagaa cgaagacaag
      961 atctgcttct ttgccttcgg agcaggtcac tttctgggga acaacacagt catcgacgtc
     1021 cttcggcagg caggactgga ggtggagcac acccctgcag gacagaccat ccacagccct
     1081 gttgcccaga gcccggcacc tccacccgag gggacctcgg cgagccccgc ccaggcgacc
     1141 ccagctgctg ccatccctgc ggtcccctcg gcagccccca ctgccccgcc tgaggaggag
     1201 gacccagccc tgtccccgca cctcctgcta cccgacagcc tcagccagct ggaggagttc
     1261 gggagacaga agaaatggca caagagacag aacaaacccc agcggccgcg gcagttcaat
     1321 gacctctggg tccgcatcga ggacagcacc accgcctcgc caccaccact gcccttccag
     1381 accacgcaca gctccggaac agccaagccc cccttccagc tctccgaccc gcgccagcag
     1441 caggaagagc cggggctggc cagcagcgca gcgcccagcc gctcacagcc caccctgggc
     1501 ctcctccccg ccatcgctgc cagcatcaca gcccccttcc tgctgcacac cctcaggctc
     1561 tcctgacctc ggccgcccac ctccctgccg ggtgcagaga aagaagccag agaaaccgat
     1621 gggagggtct gcggccacac ccacagcccc tgccaccacc t
//
LOCUS       XM_032603831            2675 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 185
            (CCDC185), mRNA.
ACCESSION   XM_032603831
VERSION     XM_032603831.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2675
                     /gene="CCDC185"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     54% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739514"
     CDS             1..1905
                     /gene="CCDC185"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 185"
                     /protein_id="XP_032459722.1"
                     /db_xref="GeneID:116739514"
                     /translation="MEGFGRFSLRPHSDLWEAPPPRKERASSARLGGSGPQSEQGLCS
                     RAGTPREGSEAAASWPHLFCSPTPRPRRHRYPDFLPESRSLTDVARRPPDHARKHRPR
                     RRRLEDAWGEAGTKPLEQRGSPPSPAWQQQPQLPPQQPQPCQHYPPAWGDLPPSYPQG
                     AYTPPSGTFRVEKVQSRDQWAVPACRGLSRWSLSSVHTKKCSVPSREFGTQSGCVYIQ
                     ERYRNDPGESLASQYSQPSLPSRAMHNQHTQILKHKLEEAVMSSRGRKLVALVLTWLK
                     KAQRMRELQQQAAIAWKELKRSDQKVQLTLETERQRLLQQSQEQWQQEEEWHKARLSR
                     KQRVRQRDRQATYTIRQGSRWKAQLEDRDNQRQEKLEGVPSETETKHGTQYQVQRLQE
                     HERKMRDLRERNSLQLQERLKQACLKKHVHTTEGQKKIQETNLSSLVNYQARKVLMDC
                     QAKAEELLRKLSLEQSSQWSQDSPQGLIKEHHRELKEKVKEEEQCQQVKWCAEEPEEQ
                     RKEHKRLSMELADQKIPQTRSNVHKNIGDKAQHIRELNILREKNHHILKLKAEKEEKC
                     HIEGIKEAIRKKEQKMEQILREKDATFREFQKISRASGTDNVRKFANSFFDPIGREAQ
                     VRAGQQGGGH"
     misc_feature    775..1893
                     /gene="CCDC185"
                     /note="Domain of unknown function (DUF4659); Region:
                     DUF4659; pfam15558"
                     /db_xref="CDD:464768"
ORIGIN      
        1 atggagggct tcggccgctt ctccctgcgg cctcactcgg acctctggga ggccccgccg
       61 ccccgcaagg agcgcgcatc ctcggcgcgg ctgggcgggt cagggccgca gagcgagcag
      121 ggcctgtgct cccgggccgg gactccccgc gaggggagcg aggccgcggc ttcctggccg
      181 cacctgttct gctcgcccac cccgcggccc cgccggcacc ggtacccgga ctttctgcct
      241 gaaagccgca gcctgacaga cgtggcccgg aggcccccgg accacgccag gaagcaccgg
      301 ccccgcagac ggcgcctgga agacgcctgg ggggaggcag gtaccaagcc cctggagcag
      361 cgaggcagcc cgcctagccc ggcctggcag cagcagcccc agctgccacc gcaacaacct
      421 cagccctgcc agcactaccc tccggcctgg ggagatttgc ccccatctta cccgcaggga
      481 gcttacactc ccccgagtgg aactttcagg gtagaaaagg tgcagagcag agaccagtgg
      541 gcagtgccgg cctgcagagg tctcagtcgc tggtcccttt cctcggttca cacgaagaag
      601 tgttctgtgc cctccagaga gttcgggacg cagtcaggtt gcgtgtacat ccaggaaaga
      661 taccgtaatg atccagggga gtcattagcc agccagtact cccagccctc gctccccagc
      721 agggcaatgc acaaccagca cacccagatc ctcaagcaca agctggaaga ggcagtcatg
      781 tcctccaggg gccggaagct tgtggccctg gtgctgacct ggctcaaaaa ggcccagagg
      841 atgcgggagc tgcagcagca ggcggctata gcctggaagg agctgaagcg ctcagaccag
      901 aaggtccagc tgaccctaga gacagagcgc cagcggctgc tgcagcagag ccaggagcag
      961 tggcagcagg aggaggagtg gcacaaggct cgcctgagcc ggaagcagcg tgtccgacag
     1021 cgggacaggc aagcgaccta cacgatccgg caggggagca ggtggaaggc gcagctagag
     1081 gaccgagaca accagcgcca ggagaagctg gaaggggtcc cctctgagac cgagaccaag
     1141 cacgggacgc agtaccaggt gcagcgcctg caggagcacg agaggaagat gcgggacctg
     1201 cgggagcgga acagcctgca gctgcaggag aggctgaagc aggcctgtct aaagaagcat
     1261 gtgcacacca cggagggcca gaaaaagatc caggagacca atcttagctc cctagtcaat
     1321 taccaggccc ggaaggtcct catggactgc caggccaagg ctgaggagct cctcaggaag
     1381 ctgtccctgg aacagagttc ccagtggtcc caagattctc cccagggcct gattaaggag
     1441 catcaccggg agctgaagga gaaggtcaag gaggaggagc agtgccagca ggtcaagtgg
     1501 tgcgcggaag agcccgagga gcagaggaag gagcacaagc ggctgtccat ggagctcgcg
     1561 gaccagaaga tcccacagac caggagtaac gtccacaaga atatcggtga caaggcgcag
     1621 cacattcggg agctcaacat cctgcgggag aagaatcatc acatcctgaa gctgaaagcc
     1681 gagaaggagg aaaagtgcca catcgagggc attaaggaag ccattaggaa aaaggagcag
     1741 aagatggagc agatcttgcg agagaaagat gcaaccttcc gtgaattcca aaagatctcc
     1801 agggcctccg ggacagacaa cgtgagaaag tttgccaaca gcttctttga tccgataggg
     1861 cgggaggccc aggttcgtgc tgggcagcag ggaggaggcc actgagaacc tgacgacaaa
     1921 cagcttacag cccaggcggc tagaaagaga tgtggcaatg tgattcattt tataatctga
     1981 ttataattga gcattcattt tttaaaagta cataaaatag ctgcaatttc ctctgatgaa
     2041 ctaggttatt gattcatttg gatggttgag agggttgggg tagaaatttg gaaattttaa
     2101 gaaaattact tgcctttgta catttggatt taaatagaaa atattcattt agttctcaag
     2161 taatcttaga agcatatgtc agacacatct ttgaggaacc aaagaaaaat ctacagtggg
     2221 aatacagttc tgtgtcatga gaacagtgtg agaggaagcc agataaaaca gcagatccag
     2281 tcttacaata ctcaaaatgt ccaggtttca gttcaaaatc acactccata tcaagaacca
     2341 agaatatctc gaactgaatg aaaaaggcaa taggtgtcaa tgtgaggatg acaaatgtta
     2401 gaaatatcta aagttcttaa agaagccatg ataaaaatgc ttcaacaagc aattatgaac
     2461 acacttgaaa caagcaaaaa ataaaattgt cttggcaaat agaaagcctc aaaaataata
     2521 atacaagata taaagaagaa ccaaatggaa attttagaac tggaaaatac attaacaaaa
     2581 ataaaaagct cagtggatga gctaaacagt agaatggagg gggcagaaga atcagtgaac
     2641 tgtaagacag aacaataaaa attaccaact ctgag
//
LOCUS       XM_032603843            2043 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dorsal inhibitory axon guidance protein
            (DRAXIN), transcript variant X1, mRNA.
ACCESSION   XM_032603843
VERSION     XM_032603843.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2043
                     /gene="DRAXIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 46%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739520"
     CDS             75..1127
                     /gene="DRAXIN"
                     /codon_start=1
                     /product="draxin isoform X1"
                     /protein_id="XP_032459734.1"
                     /db_xref="GeneID:116739520"
                     /translation="MPMAGPATHVAPMLFLALLPLLELSLAVSLGPGSSARNLPENHI
                     DLPGPALWTPQTSHHRRQGLGKKERDPGTPGRAQDGAVVATTRQASRLPGAGGLLPGQ
                     SPAGLLQDKDLLLGLTLPYPEKQSRSPGSERVKKRGREHKRRKERLKLHRGRALVRGP
                     SSLMKKVELSEDQAPDAAMEESSTSLAPTILYLTTFKAAPATEESLILPVTSLWPQAH
                     PRPDGEVMPTLDMALFDWTDYEDLKPEVWPSTKKKEKHRGKLSSDGNETSPAEVEPCD
                     HHQDCLPGTCCDLREHLCTPHNRGLNNKCFDDCMCVEGLRCYVKFHRNRRVTRRKGRC
                     VEPDTANGDQGSFINV"
     misc_feature    192..1124
                     /gene="DRAXIN"
                     /note="Region: Draxin; pfam15550"
                     /db_xref="CDD:464760"
ORIGIN      
        1 ttccgctgcg ctcggctccc gcaggcgctc ggccccgcgc ccctcggccc ctgccccgcc
       61 ggttggacag ggaaatgccc atggctgggc ccgccaccca cgttgccccc atgctgttcc
      121 tcgccctcct cccgctactg gagctgagcc tggcagtctc cctgggaccc ggaagctctg
      181 ctcggaacct cccggagaat cacatcgacc tcccgggccc agcactgtgg acgccccaga
      241 ccagccacca ccgccggcag ggcctgggca agaaggagcg cgacccaggc acacctggcc
      301 gggcccagga tggggctgtg gttgccacca ccaggcaggc ctccaggctg ccaggggcag
      361 gggggctgct gcctgggcag agtcctgcag gcctgctgca ggacaaggat ctgctcttgg
      421 ggctgacact gccctacccc gagaagcaga gccggtctcc agggtccgag agggtgaaga
      481 aacgaggcag ggagcacaag agacgtaagg agaggttgaa actacacaga ggccgagcct
      541 tggtcagagg tcccagctcc ctgatgaaga aggtggagct gtcagaagac caggccccag
      601 atgccgcgat ggaggaatcc tccaccagcc tggcccccac catactctac ctcaccacct
      661 ttaaggcagc acctgccaca gaagagtccc tgatcctgcc cgtcacatcc ctgtggcccc
      721 aggctcatcc caggcccgac ggggaggtga tgcccacact ggacatggcc ttgtttgact
      781 ggaccgatta tgaagactta aagcctgagg tctggccgtc tacgaagaag aaagagaaac
      841 accggggcaa actctccagt gatgggaatg aaacatcacc ggctgaagtg gagccctgcg
      901 accatcacca ggactgcctg ccagggacct gctgcgacct ccgggaacac ctctgcacgc
      961 cccacaaccg aggcctgaac aacaaatgct ttgacgactg catgtgtgtg gaagggctgc
     1021 gctgctacgt caaattccac cggaaccgca gggtcacccg gagaaagggg cgctgcgtgg
     1081 agcccgatac ggccaacggc gaccagggat ctttcatcaa cgtctagcgg gccgcgtgag
     1141 gcgcctccct accggccagg ggactgagcg cgggaggttt ggagaagccg ggcagtttgt
     1201 ttataactcg cggtggcaga tcaaatgggg aggcagatga ctgaggctgc aggctcagac
     1261 ccaggacact cagccccagg aggggagccc tgggcgaact gcccccgccc aggagccgag
     1321 cagcagcaca cctgcagcca ccacctggcc aatgggagac ccacaccgcc agcgcatccc
     1381 ggtgtccgcg ttctccgcga tggcaatgtc gagagcaccc tctagcgtcc gaccgcagca
     1441 ctgcaattgt ttcaagttta aaaaggaaga ggtttttgag ctggaaaaga atggaaactc
     1501 cctgagagat aagggagccc aagggcggga gacgagtacg aagcacctcc tatgtaccag
     1561 gcactgtgct aaatgaaggg catacattat ctcatttgtc acatggccct ttaaagtagg
     1621 cataatcacc attttacagg ggaggaaact gaggcaaggt tttatgactt gtccagggtc
     1681 ccacatcaat tctcctcaaa ccttcacctg tgtaagaatc cccagggatc tggttaaaat
     1741 gcagattcca attcagtcga ttctgcattt ctaacaagct ttagggcatg ccaatgctgc
     1801 tggacccaag accccactga aagcaccagg tcctggagac tcagggtgaa gctggcatct
     1861 gaacctgggt ccgaccagct ccaaggccca cgtctttgct cctccacaac taaggacgca
     1921 cttcaggttc tccacggctt tcggtgagag agacgtgttc tccagtagtt cctttcactg
     1981 tggtgaaggc tggaataacc gactcttctc ttctttccct ggacaaaggt atataattta
     2041 aaa
//
LOCUS       XM_032603854            1050 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dorsal inhibitory axon guidance protein
            (DRAXIN), transcript variant X2, mRNA.
ACCESSION   XM_032603854
VERSION     XM_032603854.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1050
                     /gene="DRAXIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 21% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739520"
     CDS             1..1050
                     /gene="DRAXIN"
                     /codon_start=1
                     /product="draxin isoform X2"
                     /protein_id="XP_032459745.1"
                     /db_xref="GeneID:116739520"
                     /translation="MAGPATHVAPMLFLALLPLLELSLAVSLGPGSSARNLPENHIDL
                     PGPALWTPQTSHHRRQGLGKKERDPGTPGRAQDGAVVATTRQASRLPGAGGLLPGQSP
                     AGLLQDKDLLLGLTLPYPEKQSRSPGSERVKKRGREHKRRKERLKLHRGRALVRGPSS
                     LMKKVELSEDQAPDAAMEESSTSLAPTILYLTTFKAAPATEESLILPVTSLWPQQAHP
                     RPDGEVMPTLDMALFDWTDYEDLKPEVWPSTKKKEKHRGKLSSDGNETSPAEVEPCDH
                     HQDCLPGTCCDLREHLCTPHNRGLNNKCFDDCMCVEGLRCYVKFHRNRRVTRRKGRCV
                     EPDTANGDQGSFINV"
     misc_feature    112..1047
                     /gene="DRAXIN"
                     /note="Region: Draxin; pfam15550"
                     /db_xref="CDD:464760"
ORIGIN      
        1 atggctgggc ccgccaccca cgttgccccc atgctgttcc tcgccctcct cccgctactg
       61 gagctgagcc tggcagtctc cctgggaccc ggaagctctg ctcggaacct cccggagaat
      121 cacatcgacc tcccgggccc agcactgtgg acgccccaga ccagccacca ccgccggcag
      181 ggcctgggca agaaggagcg cgacccaggc acacctggcc gggcccagga tggggctgtg
      241 gttgccacca ccaggcaggc ctccaggctg ccaggggcag gggggctgct gcctgggcag
      301 agtcctgcag gcctgctgca ggacaaggat ctgctcttgg ggctgacact gccctacccc
      361 gagaagcaga gccggtctcc agggtccgag agggtgaaga aacgaggcag ggagcacaag
      421 agacgtaagg agaggttgaa actacacaga ggccgagcct tggtcagagg tcccagctcc
      481 ctgatgaaga aggtggagct gtcagaagac caggccccag atgccgcgat ggaggaatcc
      541 tccaccagcc tggcccccac catactctac ctcaccacct ttaaggcagc acctgccaca
      601 gaagagtccc tgatcctgcc cgtcacatcc ctgtggcccc agcaagctca tcccaggccc
      661 gacggggagg tgatgcccac actggacatg gccttgtttg actggaccga ttatgaagac
      721 ttaaagcctg aggtctggcc gtctacgaag aagaaagaga aacaccgggg caaactctcc
      781 agtgatggga atgaaacatc accggctgaa gtggagccct gcgaccatca ccaggactgc
      841 ctgccaggga cctgctgcga cctccgggaa cacctctgca cgccccacaa ccgaggcctg
      901 aacaacaaat gctttgacga ctgcatgtgt gtggaagggc tgcgctgcta cgtcaaattc
      961 caccggaacc gcagggtcac ccggagaaag gggcgctgcg tggagcccga tacggccaac
     1021 ggcgaccagg gatctttcat caacgtctag
//
LOCUS       XR_004345612             263 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739525
            (LOC116739525), ncRNA.
ACCESSION   XR_004345612
VERSION     XR_004345612.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..263
                     /gene="LOC116739525"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116739525"
     ncRNA           1..263
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739525"
                     /product="uncharacterized LOC116739525"
                     /db_xref="GeneID:116739525"
ORIGIN      
        1 atagttcgtg tccccctcca ggcgcgggga ctcgggagcc gagctctgga cgtcaggacg
       61 ctgagggcag cctgattccc gtccccagtc agatctcagg atgaatggtt taactatctg
      121 atgtgacaat ggcggtacag tcatatttaa gactcaggac atggggactt ccctaggggt
      181 acagcgacac aagagaaact cagaggaaag aaagtttaga agccatccag ctgtttgtct
      241 gtttgttttt ttgcggtacg agg
//
LOCUS       XM_032603878            1137 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus translation initiation factor IF-2-like
            (LOC116739528), mRNA.
ACCESSION   XM_032603878
VERSION     XM_032603878.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1137
                     /gene="LOC116739528"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:116739528"
     CDS             1..1137
                     /gene="LOC116739528"
                     /codon_start=1
                     /product="translation initiation factor IF-2-like"
                     /protein_id="XP_032459769.1"
                     /db_xref="GeneID:116739528"
                     /translation="MGAAQAPAPAKTGPFLPNAGAQCIPVDKLENGTLAFPASACVLL
                     GLGCNPGPKRTSSAERTPGRRAMAWRHSAPPRGQLPCWVPDLSRQGLKPEHHWQADKV
                     CRKGSPWVPPPGAPSSNAFFQPALESGHRQAPGALPGCLPAGVGCPQGVPARPPPEPQ
                     RLPPQLPASCARPSGPEVTGKQLDRQLGARQAPAQSATGPRGRGKAGGVAIRLWFAPT
                     PFVKLSPGGRSPGFPRQRRPPPWVHGPPRPAARASPGPRGGGEPGRPASTLRCWRREP
                     RVRPAGPRTRETGTGRPCPDPDARSPGEPAAPGGATGLRAPDRSPDPAPGAPAGRSRG
                     AERGVPLFVTPSKAPLQPGSVPTHPRAHTLPGAGRVAHLSPKSC"
     misc_feature    <7..1104
                     /gene="LOC116739528"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 atgggggcgg ctcaggcacc ggctccggca aagaccggcc cctttctccc caacgcagga
       61 gcgcagtgca tcccagtgga caaactcgag aacggcactc ttgctttccc tgcctccgcc
      121 tgcgtcctcc taggtctcgg atgcaatccg ggacccaaac gcaccagctc cgcggagcgc
      181 acccccggca ggagggcgat ggcttggagg cattctgccc cgccaagggg acaactgccc
      241 tgctgggtcc cagacctctc gaggcagggg ctgaaacccg agcaccactg gcaggcggat
      301 aaagtttgcc gaaaagggtc accctgggta cccccaccgg gtgctccgag ctcgaacgcc
      361 ttcttccagc cggccctgga gtccggacac agacaagccc ccggggcgct cccggggtgt
      421 ttgcctgcgg gggtggggtg cccgcaggga gtgcccgccc gccctccccc agagccccag
      481 cgcctcccgc cccagctgcc cgccagctgt gcgcgcccgt cgggcccgga ggtcaccggc
      541 aaacagctgg atcggcagct gggagcccgg caggcccctg ctcagtcagc cacagggccc
      601 cgaggaaggg gaaaggcggg cggcgtggct atcaggcttt ggtttgctcc aactccgttt
      661 gtcaagctct caccgggagg ccggagccct ggctttcccc ggcagcgccg gcccccgccc
      721 tgggtccacg gcccgccgcg cccagcggcc cgcgcctcgc ctgggccccg gggaggaggt
      781 gagccggggc ggccggccag cacactgcgc tgctggcgcc gggagccgcg ggtgcgcccg
      841 gccggcccca gaacccggga aactggaacg gggcgcccct gccccgaccc ggacgcgcgg
      901 agcccgggag agccggccgc tcccggcggg gccacggggc tcagagctcc ggaccggagc
      961 cccgaccccg ctccaggggc accggctggc cgttcgcggg gagcggagag gggggtccct
     1021 ttattcgtaa caccgagcaa agcgccgctt cagcccggct cggtacccac gcacccgcgc
     1081 gcccacacgc tccccggcgc cggccgggtc gctcacctga gtcctaaaag ctgttga
//
LOCUS       XM_032603891             671 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon alpha inducible protein 6
            (IFI6), transcript variant X1, mRNA.
ACCESSION   XM_032603891
VERSION     XM_032603891.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..671
                     /gene="IFI6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739535"
     CDS             165..545
                     /gene="IFI6"
                     /codon_start=1
                     /product="interferon alpha-inducible protein 6 isoform X1"
                     /protein_id="XP_032459782.1"
                     /db_xref="GeneID:116739535"
                     /translation="MRQKVVSLVLCYLLLNTCGCEETEESDSGFWGTLTYMAVGGGLM
                     ATALPALGFTSTGIAANSVAASLMSWSAVANGGGVPAGGLVAMLQSLGANGGSALMAK
                     IGALLGYTVHKQIESRGKERADEE"
     misc_feature    276..488
                     /gene="IFI6"
                     /note="Interferon-induced 6-16 family; Region: Ifi-6-16;
                     pfam06140"
                     /db_xref="CDD:461837"
ORIGIN      
        1 ggccacctgg ggcaatcgga aagggctata aaaaacgagc ctataaaaat gagcctaaga
       61 gctgttacct cactgctgtt cctgtctatc agcaggctgc aggcaggaag cttccttctc
      121 tgctctcctc caagtacggc gacaaagcct tgcgctgtgc caccatgcgg cagaaggtgg
      181 tatcgctcgt cttgtgctac ctgctactca acacctgcgg ctgcgaggag acagaagaaa
      241 gtgactccgg gttctggggc acgctgacct acatggccgt cggaggaggg ctcatggcca
      301 cggcgctgcc cgcgctgggc ttcacgagca caggcatcgc cgccaactcg gtggctgcct
      361 cgctgatgag ctggtcggcc gtggcgaacg ggggcggagt gcccgccggg gggctggtgg
      421 ccatgctgca gagcctgggg gctaatggtg gcagtgccct catggccaag attggggccc
      481 ttctgggcta tactgtccac aagcaaatcg aaagcagagg gaaggagaga gcggatgagg
      541 agtagctagc agctccctgg atccccctcc ttcctccttg tcttcctttt ccagctgcag
      601 tccagaggtt cctctttcac acttggcaat gacctaggta aaaaaacaga ataaacgtct
      661 ctcagaaaac a
//
LOCUS       XM_032603897             782 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon alpha inducible protein 6
            (IFI6), transcript variant X2, mRNA.
ACCESSION   XM_032603897
VERSION     XM_032603897.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..782
                     /gene="IFI6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739535"
     CDS             276..656
                     /gene="IFI6"
                     /codon_start=1
                     /product="interferon alpha-inducible protein 6 isoform X1"
                     /protein_id="XP_032459788.1"
                     /db_xref="GeneID:116739535"
                     /translation="MRQKVVSLVLCYLLLNTCGCEETEESDSGFWGTLTYMAVGGGLM
                     ATALPALGFTSTGIAANSVAASLMSWSAVANGGGVPAGGLVAMLQSLGANGGSALMAK
                     IGALLGYTVHKQIESRGKERADEE"
     misc_feature    387..599
                     /gene="IFI6"
                     /note="Interferon-induced 6-16 family; Region: Ifi-6-16;
                     pfam06140"
                     /db_xref="CDD:461837"
ORIGIN      
        1 tgttcctgtc tatcagcagg ctgcaggcag gaagcttcct tctctgctct cctccaagga
       61 acatcagccc gctggtgccg tgaggaaacg gaaagcctgc ggctccttag aggggtcctg
      121 ggctcagtcc agagcatctt gctgcttttt gtggactcat cctcgaatcg aaagggaata
      181 caatagagcg ggagtggctc caatagggct ctggggaccg tctcttccct ctctcccatc
      241 ccaagtacgg cgacaaagcc ttgcgctgtg ccaccatgcg gcagaaggtg gtatcgctcg
      301 tcttgtgcta cctgctactc aacacctgcg gctgcgagga gacagaagaa agtgactccg
      361 ggttctgggg cacgctgacc tacatggccg tcggaggagg gctcatggcc acggcgctgc
      421 ccgcgctggg cttcacgagc acaggcatcg ccgccaactc ggtggctgcc tcgctgatga
      481 gctggtcggc cgtggcgaac gggggcggag tgcccgccgg ggggctggtg gccatgctgc
      541 agagcctggg ggctaatggt ggcagtgccc tcatggccaa gattggggcc cttctgggct
      601 atactgtcca caagcaaatc gaaagcagag ggaaggagag agcggatgag gagtagctag
      661 cagctccctg gatccccctc cttcctcctt gtcttccttt tccagctgca gtccagaggt
      721 tcctctttca cacttggcaa tgacctaggt aaaaaaacag aataaacgtc tctcagaaaa
      781 ca
//
LOCUS       XM_032603902             618 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon alpha inducible protein 6
            (IFI6), transcript variant X3, mRNA.
ACCESSION   XM_032603902
VERSION     XM_032603902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..618
                     /gene="IFI6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739535"
     CDS             166..492
                     /gene="IFI6"
                     /codon_start=1
                     /product="interferon alpha-inducible protein 6 isoform X2"
                     /protein_id="XP_032459793.1"
                     /db_xref="GeneID:116739535"
                     /translation="MRQKVVSLVLCYLLLNTCGCEETGLMATALPALGFTSTGIAANS
                     VAASLMSWSAVANGGGVPAGGLVAMLQSLGANGGSALMAKIGALLGYTVHKQIESRGK
                     ERADEE"
     misc_feature    235..435
                     /gene="IFI6"
                     /note="Interferon-induced 6-16 family; Region: Ifi-6-16;
                     pfam06140"
                     /db_xref="CDD:461837"
ORIGIN      
        1 tggccacctg gggcaatcgg aaagggctat aaaaaacgag cctataaaaa tgagcctaag
       61 agctgttacc tcactgctgt tcctgtctat cagcaggctg caggcaggaa gcttccttct
      121 ctgctctcct ccaagtacgg cgacaaagcc ttgcgctgtg ccaccatgcg gcagaaggtg
      181 gtatcgctcg tcttgtgcta cctgctactc aacacctgcg gctgcgagga gacagggctc
      241 atggccacgg cgctgcccgc gctgggcttc acgagcacag gcatcgccgc caactcggtg
      301 gctgcctcgc tgatgagctg gtcggccgtg gcgaacgggg gcggagtgcc cgccgggggg
      361 ctggtggcca tgctgcagag cctgggggct aatggtggca gtgccctcat ggccaagatt
      421 ggggcccttc tgggctatac tgtccacaag caaatcgaaa gcagagggaa ggagagagcg
      481 gatgaggagt agctagcagc tccctggatc cccctccttc ctccttgtct tccttttcca
      541 gctgcagtcc agaggttcct ctttcacact tggcaatgac ctaggtaaaa aaacagaata
      601 aacgtctctc agaaaaca
//
LOCUS       XM_032603916            1750 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SDE2 telomere maintenance homolog (SDE2),
            transcript variant X1, mRNA.
ACCESSION   XM_032603916
VERSION     XM_032603916.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1750
                     /gene="SDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 long SRA reads, 3
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739545"
     CDS             143..1504
                     /gene="SDE2"
                     /codon_start=1
                     /product="replication stress response regulator SDE2
                     isoform X1"
                     /protein_id="XP_032459807.1"
                     /db_xref="GeneID:116739545"
                     /translation="MAEPAAVVWLRGPSFGCKAVWCTSATRSIRDFIHRHCQDQDIPV
                     ECYFVKCNGLLVNTSDTVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACR
                     DLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQKRLERLQRKLAEPRHCFTSPDYQQQC
                     HEMAERLEDSVLRGMQAASSKTVSAGVGESRKRPNKSKTDRAASAEKRKCFWLGMEGL
                     ETAEGSGSASSDDDSAEAPSTSGMSFHVPQNGSDVVEMAAEFPSSSQQARVLSADSRS
                     REELQTPVTDSGNGISEDLYAELGEASTQEYMERKMALETEKTQEKNEAESKEPLEKE
                     AAGVGLNKEQETKEMTDGERGAKGAPGGDRENIPVAKLEESQSGNTDIGQETVDLLAF
                     SSVAEVELLGLEKLKCELTARGLKCGGTLQERAARLFSVRGLAKEQIDPALYAKPSKG
                     KKK"
     misc_feature    <347..580
                     /gene="SDE2"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; Region:
                     Ubl1_cv_Nsp3_N-like; cl28922"
                     /db_xref="CDD:475130"
     misc_feature    1247..1480
                     /gene="SDE2"
                     /note="Replication stress response SDE2 C-terminal;
                     Region: SDE2_2C; pfam13297"
                     /db_xref="CDD:463835"
ORIGIN      
        1 actatcccca ggggaggaac aagacgagcg gaagatgtga ggggcggggc gctggagggc
       61 gagctcaacg tcatcaagat acgccgagct ggttgtggcg cttagcgctt ctgggagtct
      121 tgagattcgg cgactgggtg aaatggcgga gcctgcggcc gtggtgtggc ttcggggccc
      181 cagcttcggg tgcaaggcgg tgtggtgtac ctcggccacg cgctccatac gcgattttat
      241 ccaccgacac tgccaagatc aggatattcc agtggaatgc tactttgtga aatgcaatgg
      301 attactcgtt aacaccagtg acacagtgca gcatggagct gtttatagtt tggaacccag
      361 acttcgtggt ggaaaaggag gttttggctc tatgctccga gcacttggtg ctcagattga
      421 gaagacaacc aatcgagaag cttgccggga tctcagtgga aggagactgc gagatgtcaa
      481 tcacgaaaaa gcaatggctg agtgggtaaa acaacaagcc gagcgagaag ctgaaaagga
      541 gcaaaagcgc ctggaacgac tgcagcggaa gcttgcagaa cccaggcact gcttcaccag
      601 ccccgactac cagcagcagt gccatgagat ggccgagcgt ctggaggatt ccgtcctccg
      661 aggtatgcag gctgcctcca gcaagacggt atcggcagga gtcggtgaga gtcggaaacg
      721 gcctaacaaa tcaaaaacag acagagcagc cagtgcagag aagaggaaat gcttttggtt
      781 gggcatggaa ggactagaga ctgcagaagg gtctggctct gcgagctccg atgatgacag
      841 tgcagaagca cctagtactt caggaatgag ctttcacgtt ccccaaaatg gcagtgatgt
      901 tgttgagatg gcagccgaat ttcctagtag ctctcagcag gcaagagttc tgagtgcaga
      961 ctctagatca cgagaagaac tacagacccc tgtgacggac tctgggaatg gtatttcaga
     1021 agacttgtat gctgagctgg gagaggcatc tacccaggag tacatggaaa ggaagatggc
     1081 tttagaaaca gagaaaaccc aggagaaaaa tgaggcagag agtaaagaac ccttagaaaa
     1141 ggaagcagct ggagttggac tgaataagga gcaggagacc aaagaaatga ctgatgggga
     1201 aagaggtgcc aagggagccc ctggaggaga cagggaaaac atacctgttg ccaagctgga
     1261 ggaaagccag tcaggaaaca cagatattgg tcaggaaact gtagatttac tggcgttcag
     1321 ctctgttgca gaagtggagt tgctgggttt ggagaagctc aagtgtgaac tcacggcccg
     1381 gggactgaag tgcgggggca ctctccagga gcgggcggcg aggctcttct ctgtcagagg
     1441 actggcaaag gagcagatag atccagcttt atatgccaag ccttcgaaag ggaagaagaa
     1501 gtgaatttca tcggagctga tctcctgttt ctttataggc tagcgcttac aacctgtata
     1561 atgttgactc ttggacatta ttcttgttgc tattaaaggt gactttttaa taaccaaatt
     1621 ctaactatcc tctttttcat tattagattt atagaattaa tttgtgaaac cctctgggcc
     1681 tgaagttttt tttgtgggaa ggtttcttat aacttatttc tttaataaat atagggctat
     1741 tcagagtttg
//
LOCUS       XM_032603925            1737 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SDE2 telomere maintenance homolog (SDE2),
            transcript variant X2, mRNA.
ACCESSION   XM_032603925
VERSION     XM_032603925.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1737
                     /gene="SDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 86% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739545"
     CDS             49..1401
                     /gene="SDE2"
                     /codon_start=1
                     /product="replication stress response regulator SDE2
                     isoform X2"
                     /protein_id="XP_032459816.1"
                     /db_xref="GeneID:116739545"
                     /translation="MAEPAAVVWLRGPSFGCKAVWCTSATRSIRDFIHRHCQDQDIPV
                     ECYFVKCNGLLVNTSDTVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACR
                     DLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQKRLERLQRKLAEPRHCFTSPDYQQQC
                     HEMAERLEDSVLRGMQAASSKTVSAGVGESRKRPNKSKTDRAASAEKRKCFWLGMEGL
                     ETAEGSGSASSDDDSAEAPSTSGMSFHVPQNGSDVVEMAAEFPSSSQQARVLSADSRS
                     REELQTPVTDSGNGISEDLYAELGEASTQEYMERKMALETEKTQEKNEAESKEPLEKE
                     AAGVGLNKEQETKEMTDGERGAKGAPGGDRENIPVAKLEESQSGNTGFPGGAVVESPP
                     ADAGDMGSCPGTGRYHVPRSGWAREPWPLGLRVRSLCSATGEATTVRGPRTAKKKKKT
                     "
     misc_feature    <253..480
                     /gene="SDE2"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; Region:
                     Ubl1_cv_Nsp3_N-like; cl28922"
                     /db_xref="CDD:475130"
ORIGIN      
        1 gtggcgctta gcgcttctgg gagtcttgag attcggcgac tgggtgaaat ggcggagcct
       61 gcggccgtgg tgtggcttcg gggccccagc ttcgggtgca aggcggtgtg gtgtacctcg
      121 gccacgcgct ccatacgcga ttttatccac cgacactgcc aagatcagga tattccagtg
      181 gaatgctact ttgtgaaatg caatggatta ctcgttaaca ccagtgacac agtgcagcat
      241 ggagctgttt atagtttgga acccagactt cgtggtggaa aaggaggttt tggctctatg
      301 ctccgagcac ttggtgctca gattgagaag acaaccaatc gagaagcttg ccgggatctc
      361 agtggaagga gactgcgaga tgtcaatcac gaaaaagcaa tggctgagtg ggtaaaacaa
      421 caagccgagc gagaagctga aaaggagcaa aagcgcctgg aacgactgca gcggaagctt
      481 gcagaaccca ggcactgctt caccagcccc gactaccagc agcagtgcca tgagatggcc
      541 gagcgtctgg aggattccgt cctccgaggt atgcaggctg cctccagcaa gacggtatcg
      601 gcaggagtcg gtgagagtcg gaaacggcct aacaaatcaa aaacagacag agcagccagt
      661 gcagagaaga ggaaatgctt ttggttgggc atggaaggac tagagactgc agaagggtct
      721 ggctctgcga gctccgatga tgacagtgca gaagcaccta gtacttcagg aatgagcttt
      781 cacgttcccc aaaatggcag tgatgttgtt gagatggcag ccgaatttcc tagtagctct
      841 cagcaggcaa gagttctgag tgcagactct agatcacgag aagaactaca gacccctgtg
      901 acggactctg ggaatggtat ttcagaagac ttgtatgctg agctgggaga ggcatctacc
      961 caggagtaca tggaaaggaa gatggcttta gaaacagaga aaacccagga gaaaaatgag
     1021 gcagagagta aagaaccctt agaaaaggaa gcagctggag ttggactgaa taaggagcag
     1081 gagaccaaag aaatgactga tggggaaaga ggtgccaagg gagcccctgg aggagacagg
     1141 gaaaacatac ctgttgccaa gctggaggaa agccagtcag gaaacacagg cttccctggt
     1201 ggcgcagtgg ttgagagtcc gcctgccgac gcaggggaca tgggttcgtg ccccggtacg
     1261 ggaagatacc acgtgccgcg gagcggctgg gcccgtgagc catggccgct gggcctgcgc
     1321 gtccggagcc tgtgctctgc aacgggagag gctacaacag tgagaggccc gcgtactgca
     1381 aaaaagaaaa aaaaaaccta ggatattggt caggaaactg tagatttact ggcgttcagc
     1441 tctgttgcag aagtggagtt gctgggtttg gagaagctca agtgtgaact cacggcccgg
     1501 ggactgaagt gcgggggcac tctccaggag cgggcggcga ggctcttctc tgtcagagga
     1561 ctggcaaagg agcagataga tccagcttta tatgccaagc cttcgaaagg gaagaagaag
     1621 tgaatttcat cggagctgat ctcctgtttc tttataggct agcgcttaca acctgtataa
     1681 tgttgactct tggacattat tcttgttgct attaaaggtg actttttaat aaccaaa
//
LOCUS       XM_032603934            4342 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SDE2 telomere maintenance homolog (SDE2),
            transcript variant X3, mRNA.
ACCESSION   XM_032603934
VERSION     XM_032603934.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4342
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4342
                     /gene="SDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739545"
     CDS             3116..4228
                     /gene="SDE2"
                     /codon_start=1
                     /product="replication stress response regulator SDE2
                     isoform X3"
                     /protein_id="XP_032459825.1"
                     /db_xref="GeneID:116739545"
                     /translation="MLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAEWVKQQAE
                     REAEKEQKRLERLQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLRGMQAASSKTVSA
                     GVGESRKRPNKSKTDRAASAEKRKCFWLGMEGLETAEGSGSASSDDDSAEAPSTSGMS
                     FHVPQNGSDVVEMAAEFPSSSQQARVLSADSRSREELQTPVTDSGNGISEDLYAELGE
                     ASTQEYMERKMALETEKTQEKNEAESKEPLEKEAAGVGLNKEQETKEMTDGERGAKGA
                     PGGDRENIPVAKLEESQSGNTDIGQETVDLLAFSSVAEVELLGLEKLKCELTARGLKC
                     GGTLQERAARLFSVRGLAKEQIDPALYAKPSKGKKK"
     misc_feature    <3119..3304
                     /gene="SDE2"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; Region:
                     Ubl1_cv_Nsp3_N-like; cl28922"
                     /db_xref="CDD:475130"
     misc_feature    3971..4204
                     /gene="SDE2"
                     /note="Replication stress response SDE2 C-terminal;
                     Region: SDE2_2C; pfam13297"
                     /db_xref="CDD:463835"
ORIGIN      
        1 gcttctggga gtcttgagat tcggcgactg ggtgaaatgg cggagcctgc ggccgtggtg
       61 tggcttcggg gccccagctt cgggtgcaag gcggtgtggt gtacctcggc cacgcgctcc
      121 atacgcgatt ttatccaccg acactgccaa gatcaggtca ggtttgtggt tcctggaagg
      181 aatgggaaag caggacaggg gcaggattag gtgcggtgag ggtctgtcgg gggcacgtct
      241 attctttggg gttctcagtt tttgaggctg agggttaggg ttttaaggtg cttcaaactg
      301 atgctgaggc ctgcctttgc ttttgttttg tggtggtttt gtctcacaga agagagaaaa
      361 acccctccgc tcacgggcgt ttagtccggc cctcagtctg gactaacaga atacactttg
      421 gtattctctt cattcgtaaa tgaggcagtt gaaccagatg atttttaagg ctcgtttcct
      481 tactttcgct ctgtgcttat gtgacgtgca ttttttgtcc actgataaca cagccctctt
      541 agctccaacc tagagaagta tgtcatatcc aaacccaggc caaaggatgg ttgggaagga
      601 aatggattta tctggtcact ggtcggggcc aagcattcac ataggtcatg tcgagcgcat
      661 gattcttagg gcctgtcatg tagatgtttt cactaatcat tatgatgctc tgatttgccc
      721 aggcatattt ttgaaaacct gtcattgact tctaaagtta catgtgtggt ttacttaatt
      781 atcaagtaag caagctttta ccatctataa gatattaaac ctattcagtt atttaaagaa
      841 tatgctggtc tcaatgaatc taattttaat cttgacattt gatctcctat taacacgtta
      901 acactgcagt ctaaaccaaa tctttacttg gattggttcc atgaagaagc aatgtctgtt
      961 tgcaaataat gtggtttttc agtttcccca tttttcttcc tagacttcag tccagtttaa
     1021 aaactgtcag aaatgttttt accatctgaa tggggaaata ttttccaaaa tagttggatt
     1081 ttaatatctc tgaaaatgac ttttatctga tgaccagttt tcaaacttac tgacagttga
     1141 tccaaagtga gaccagaaaa aaataagatc ttaattatga ggggtcttgg aaaaaatagt
     1201 ttaaaataag caagaaatat aaacgaatgg attcattcat atacttaaga cacatggcca
     1261 taacaagtat gaacaaaact tataaaaggg catttgatga gacactggaa cgaataaaaa
     1321 tagctcaagt tcatgcttat gccttttaaa acagaactat tctgacacat gataaagtta
     1381 gtgttagctc tccctgagaa agtaaaagtc agcctggctc ttcatcagac tgggataata
     1441 cacagataaa gctagctgca aagttaatag gaaacagtgt ttctcccaag gacatggtac
     1501 agtgatgaaa tgtcataatg acttccttga aagtctgctg cttttttagt ctttgtgaaa
     1561 ccttacctca aaaatcatag actataagaa taaactgctg ttggaagtta tatcagtaag
     1621 aagcatccca ctcttacctt gagaatctaa gtcactttga cgtagagaag cactcttgat
     1681 ttcgcaggtg cagagcttca gattaggggt ttccggacac aacattccac atttctctta
     1741 actttgtagt ttccgaggaa agaggagcct ggatctcctt cacagtctag acctgatgtt
     1801 gactcttata cacacagccc tgctttattg tgagcctctc gaaacattgt ttcatttaaa
     1861 ttttacctaa attccatcca ccccaaatcc tataataact atatcttttt atttgttggt
     1921 gagacacctc atgattcctc ttgtgtgcag tccctctctt gttgtagtga gtcaagaaat
     1981 ttgagttgtt gaactatatg ttgtctctgg tggccttcgg ctgattggcc aaagacacac
     2041 gtaatacttt ctgcttgaaa tgctctgtaa tggttaaaaa cagttaaatt gattgtaaat
     2101 tttctttgtt tttttttcta ctagtgatta ttaactgaca agaatcttaa caagtagaaa
     2161 atgccatttt gttaatcagt tgtctcgtta aataagcagt tttgtttgaa aatgaagtat
     2221 gatgcatgat gtataatctt tcagccttca tgttaaagtc ttttaaagtt atttaggatt
     2281 ttagaaatac catacccatt ggatatataa gatattaaaa gaaactaaag tagcttttaa
     2341 tttataaaca ttaaacatat aggaggtata ttatatgtct catttaattt ttagaactct
     2401 ttaaagtgga cagtatttta taggcaagaa tagtccttca tgttaatcac atcattgcat
     2461 atagcctgag ctcccttgct cctctctcct ggtatcatat ttgcctggga aaactccagt
     2521 cagtttaaat ccagctctcc acctgtttta cctggcatct gggcagtgac tgtggtaggg
     2581 gaactaatca cgcaaacaag tctcactaca aattcataaa caccaaactt agtggtgctt
     2641 ggcatttcta ctgtatttct ctaacccaga gcatgcttcc actgggttgc aggactgctg
     2701 agaatattga tctaagtagt ccttgggcag ctggacagaa cccaggatct caacacatct
     2761 ttaatagcct ggctcatttt tcctagggtg tcatccaaat attatttgtg tataccatgg
     2821 tgtgaaaagg gttaagaggc actgctcagt tcatcactct ttcactctcg tagattactt
     2881 tttcacatct ctctttaaat ctccaagact tcttccatcc caaggatcat actttgtact
     2941 caagcagtaa ggagagaatt tctgcatcgt cacaccagtg cctctggata ttccagtgga
     3001 atgctacttt gtgaaatgca atggattact cgttaacacc agtgacacag tgcagcatgg
     3061 agctgtttat agtttggaac ccagacttcg tggtggaaaa ggaggttttg gctctatgct
     3121 ccgagcactt ggtgctcaga ttgagaagac aaccaatcga gaagcttgcc gggatctcag
     3181 tggaaggaga ctgcgagatg tcaatcacga aaaagcaatg gctgagtggg taaaacaaca
     3241 agccgagcga gaagctgaaa aggagcaaaa gcgcctggaa cgactgcagc ggaagcttgc
     3301 agaacccagg cactgcttca ccagccccga ctaccagcag cagtgccatg agatggccga
     3361 gcgtctggag gattccgtcc tccgaggtat gcaggctgcc tccagcaaga cggtatcggc
     3421 aggagtcggt gagagtcgga aacggcctaa caaatcaaaa acagacagag cagccagtgc
     3481 agagaagagg aaatgctttt ggttgggcat ggaaggacta gagactgcag aagggtctgg
     3541 ctctgcgagc tccgatgatg acagtgcaga agcacctagt acttcaggaa tgagctttca
     3601 cgttccccaa aatggcagtg atgttgttga gatggcagcc gaatttccta gtagctctca
     3661 gcaggcaaga gttctgagtg cagactctag atcacgagaa gaactacaga cccctgtgac
     3721 ggactctggg aatggtattt cagaagactt gtatgctgag ctgggagagg catctaccca
     3781 ggagtacatg gaaaggaaga tggctttaga aacagagaaa acccaggaga aaaatgaggc
     3841 agagagtaaa gaacccttag aaaaggaagc agctggagtt ggactgaata aggagcagga
     3901 gaccaaagaa atgactgatg gggaaagagg tgccaaggga gcccctggag gagacaggga
     3961 aaacatacct gttgccaagc tggaggaaag ccagtcagga aacacagata ttggtcagga
     4021 aactgtagat ttactggcgt tcagctctgt tgcagaagtg gagttgctgg gtttggagaa
     4081 gctcaagtgt gaactcacgg cccggggact gaagtgcggg ggcactctcc aggagcgggc
     4141 ggcgaggctc ttctctgtca gaggactggc aaaggagcag atagatccag ctttatatgc
     4201 caagccttcg aaagggaaga agaagtgaat ttcatcggag ctgatctcct gtttctttat
     4261 aggctagcgc ttacaacctg tataatgttg actcttggac attattcttg ttgctattaa
     4321 aggtgacttt ttaataacca aa
//
LOCUS       XR_004345632             462 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739554
            (LOC116739554), ncRNA.
ACCESSION   XR_004345632
VERSION     XR_004345632.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..462
                     /gene="LOC116739554"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739554"
     ncRNA           1..462
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739554"
                     /product="uncharacterized LOC116739554"
                     /db_xref="GeneID:116739554"
ORIGIN      
        1 ccagccgctc cgcggcatgt gggatcttcc cagaccgggg cacgaacccg cgtcccctgc
       61 attcgcaggc ggactctcaa cccctgcgcc acgagggaag cccatcttct cagattttaa
      121 agctgttgga gaagtcgggc acagcttccc tccaccccag gaaggaaggg actgaccttg
      181 atctggcacc cacttgcttg taccaaaaga agaacctact tcacccagct ggcttgggtt
      241 ccctctgaga agccgtcctg attgactgaa agataaggct aaactctagc aagctgaaga
      301 gctctttcaa gaagcctttg agccagagag aagtggggag gccctagtct ccagcctggg
      361 cagcccactg tatctggagc cacctgggat aacactttgc ttcaccattg ctcccgggtc
      421 tacaagctgt ccatcccacc cgtcctggtt tctcctgtgt tg
//
LOCUS       XM_032603957            5039 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lysophospholipase like 1 (LYPLAL1),
            transcript variant X1, mRNA.
ACCESSION   XM_032603957
VERSION     XM_032603957.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5039
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5039
                     /gene="LYPLAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739558"
     CDS             21..719
                     /gene="LYPLAL1"
                     /codon_start=1
                     /product="lysophospholipase-like protein 1 isoform X1"
                     /protein_id="XP_032459848.1"
                     /db_xref="GeneID:116739558"
                     /translation="MAAASGSVRLQRCMVSPAGRHSASLIFLHGSGDSGQGLRTWIEQ
                     VLNQDFTFQHVKVIYPTAPPRPYTPLKGGFSNVWFDRFQISNDCPEHLESIDVMCQVL
                     TDLIDGEVRSGIKKNRILVGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKTSAVYQ
                     ALQKSDGVLPELFQCHGTADELVLHSWGEETNSVLKSLGVRTKFHSFPGVYHELSKAE
                     LEKLKSWILTKLPD"
     misc_feature    63..698
                     /gene="LYPLAL1"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; Region:
                     alpha/beta hydrolases; cl21494"
                     /db_xref="CDD:473884"
ORIGIN      
        1 ctctagtcgt ggcggcagtc atggcggctg cgtcgggttc agttcgctta cagcgctgca
       61 tggtgtcgcc ggcggggagg cacagcgcct ctctgatctt cctgcatggc tcaggtgatt
      121 ctggacaagg attgagaacg tggatcgagc aagttttaaa tcaagatttc acattccaac
      181 atgtaaaagt tatttatcca acagctcctc ccaggccata tactcctttg aaaggaggat
      241 tctccaatgt atggtttgac agatttcaaa tatctaatga ctgcccagaa caccttgaat
      301 caattgatgt aatgtgtcag gtgcttacag atttgattga tggtgaagta agaagtggta
      361 tcaagaagaa cagaatatta gtaggaggat tttctatggg agggtgcatg gcaatgcatt
      421 tagcatacag aaatcatcaa gatgtggcag gagtatttgc tctttctagt tttctgaata
      481 agacatctgc tgtttaccag gctcttcaga aaagtgatgg tgtcctccct gaattatttc
      541 agtgtcatgg taccgcagat gagttagttc ttcattcttg gggtgaagag acaaactcag
      601 tgttaaaatc tctaggagtg aggacaaagt ttcatagttt cccaggtgtt taccatgagt
      661 taagcaaagc tgagctagaa aaactgaagt catggattct tacaaagcta ccagactgaa
      721 tgagtcaaga ttgatttgtt aatatatgag taatgtcttt atgaaaagtg atttttactg
      781 ccaaattcta atttgataaa caataattaa aatattaaaa aatatcagca gtttactgac
      841 ttattagtta ttgaaatgct tagcaccata gagagtagta taatcttatt aatggttaac
      901 gttaatttag gcaaacatct gtgtattatt tggcagatac atttttataa atatttgaag
      961 gccttgtaag taagtaaata ttgaaatatt agaaagtaat taaactagct taaataaagg
     1021 caatgagaaa ccaggaaaag ttttaacatg atattatttt atctttgtta tcactttgtt
     1081 taaattgcct ttccggagat attcatgctc gtgtagtttt tgacagaata acattagtac
     1141 cccacattta tagagtagtt tcccgttacc tcacctgacc atcacaagag cttgatgaag
     1201 cagactgagt agttgttact ggtattttat aatagggata gaaagattga aaactttccc
     1261 aaagccccaa gagtaaaaac tagaatccag accttctggt cccagtggag ctccctttct
     1321 ctgagaccag attgctgctc tgctccagtc ctagggttcc ggttgctctt cagatccttg
     1381 tcagcactca gtatggccag tcttttcagt tttatccatt ctagtgggta tacagtggta
     1441 acactttgtg gttttaatct gcattttcct aacctaatga tgttaagcaa tttctatatg
     1501 cttatttgtg atctgtataa attctgatga tatctctatt cagatctttt gcccattttt
     1561 tattagggca ttgtaagagc ttgcattgta agagctgttt atatatgctg gatagaagtc
     1621 ctttgttagc cagatgtttt accttttttt tttttcttag tctgtggctt gccttatttt
     1681 ctttacagtg taattcaaaa gagcagaagt ttttaatttg atgacgtcca gtttattcat
     1741 tttttttcat ttatactttg tgcttttgat gtcatattta agcaatctta agaaatccta
     1801 ggtcactaag attttctcgt atattttctt caactaatac actcctttag tgctataaat
     1861 cttcccgcaa gtattatatt agcaacatcc cacgatcttt ttatattttg tgttttcatt
     1921 ttcattcagg tcaaatcttt ctaaattccc ttttgatttc ttctttaacc cttgggttac
     1981 ttaaaattgt gttattttgt ttcagtatat tgggaatttt ctagagatct ttgctattga
     2041 tttctaagtt aattccattg tgggtcaaga gagcatactt tgtatggctt gaaacctttt
     2101 aaatttattg tgacttgttt tatagcccag aagatggtct atcttggtaa atgttttgtg
     2161 tgcactttag aaaaatatgt atgatgctag tgttgggtgg agtgttctct acatatcagt
     2221 caggtcaagt tggttgatat ccttgtttaa atctacgata tccttgctga ttttctgcct
     2281 gcttgtttta taaattattg agaggggaat attgaacgtt ccaagtataa ctgaatttgt
     2341 ttcactttgc cattccctca gtttttgctt catgtactat gaggctccat tattagatgc
     2401 gcaaacatgt aggactatta tgttcccctg atgaactggc ctcttcttct ttatgaactg
     2461 atcatctcta tccgtgatag atttttttgc tctgaaatac tcattgtgtg atattgatat
     2521 agtccttcca gctcccttta gactagcatc tttttccata cttctctttt aacctatttg
     2581 tgtctttatc cgtaaagagc aatgccatca ggcagagcac agttaggcct tccttttcta
     2641 tccagtatga tcatccctgc tttttaattg attatttaga acattttaat gtgattgttg
     2701 gcatgtttgg atttcaagct accatcttaa ctgtttatgt tctctatatt ccatctcttc
     2761 ttctttgctc ccttattcct ctctttctac tccccctttt tttcttggat tatgtgttct
     2821 tttgctggct tcttagttat gatactttgt acttttattt taatgattac tttagggttt
     2881 atagcatata atttttataa acttcttaaa attttgaaat aattacaagc tcacaggaag
     2941 tgttaacggt agtacagagg agccccatgt accctgcgcc cagtggttac atcttacata
     3001 actatagtat aatgtcaaaa ccaggaaact gacattggta caatgtgtgt gtatagttat
     3061 atgccatttt tccacatggc tgcatggatt catgtatcca ccactacaat caatatgcag
     3121 aactgttcca tcaccacaaa gatgcccatt gtgctgccta tagtcatatc catcccttcc
     3181 tctgtcacca tctaacccat aacaaccact gatttgtact ccatctctat aactggacat
     3241 tgtgagaatg ttatagaagt agaactatac agtatgtgac attttgagat tgactttttt
     3301 cactccatcc aaattgttgc aaccatcaat agtttacttc tttttattgc tgcatagtat
     3361 gccatgacat gaatgtattc agtattatag tttgttaaac tgttctccaa ttaaaacaca
     3421 gtttttttgg ctattacgaa taaagctgcc ttgaacactc ttgtatagat tttcgtctag
     3481 ccgtaatttt ttttctctct gggataaata cccaacagag tgattcctgg gttgtataat
     3541 aagtgtatgt ttaagaaact accagacttt tccagagtag ctgtgccaac ttatattcct
     3601 accagcaagg caggagagat aaatattctc tgcatcctca tcagcatttt gtagtttcac
     3661 tatttttttt ttattttagc tgttctaata ggtatataat gaaatctcat tgtggtcaaa
     3721 atgtgcattc cctaatggct agtgattttg agcctatttt cataagctta cttgccatct
     3781 ctatatacta tttggtagat gtttcttcat gtcttttgcc catgatcaaa ttggattttc
     3841 tttttgtttg cgttaactgt tgagttttga aagtttcttt taatatcttc tagatgtgag
     3901 tcttttgtta gttatatagt tttcaaatat tttttcactg tctgtagctt gtctttgcaa
     3961 cttcttaggt ccttttatgc aaaagttcta aattttaatg aagtccagtt tactgacttt
     4021 ttctttcgtg gattatgctt ttggtgttag tgagctattg tgagttaatt tttgtacaag
     4081 gtgtgagatt taggttgaca ttcattttgt ttttgcctat agataccaag ttgcccagca
     4141 ctgtttggtg aaaaaactat ccttcattga attatttttg tacctttatc aaaaatcagt
     4201 tgtctgttgc ttgtgtgtct gtttcttgtt tatctgttct gttccattga tctctgtgtc
     4261 tgtccacata acgttaatta ctatagttat gtaattcttg cagtcagtta cagttaattc
     4321 ttcctaatat attctccttt tcaaaattgt attagctatt ttagttccct tcctttccat
     4381 ataaatttta aaatacacta atctatatcc acccaagaaa tcttgctgga attttgaaag
     4441 gaagtgtgtt aaatttgtat aacaatttag agagaattga catcctttcc atattgaatc
     4501 ttccaattca tgaacatgat atattactcc acttatttag gtcttctgga gtttctttca
     4561 ttattttttt atagcattta acacacaagt tctgtacatg ttttgttaga tttgtacctg
     4621 agtattttat tttttgagga attataaatg gtactgtatt attaaataca gtttccctgt
     4681 gtacattgct agcttattga aatacagttg ttttttgtgt gggtgtctta tatcatatga
     4741 tcttgtttag gtcagttact aattctagga ggttttctgt aaattccttg ggattttcta
     4801 caaagaaaat gtcacttgca aattggaatc aatttatttc ttcctttcca aatgaagtcc
     4861 ttgtatttcc ttttcgttgc ttattacact ggctagaact tccagcacca tgctggatga
     4921 gaaccgtgag agcagacatc cttgtcttgt tcccagcctt agggggaaag cattcagtct
     4981 ttcattggta aatatgttag ctgtagggtt ttttgtagat gttctttatc aagtcaatg
//
LOCUS       XM_032603966            5095 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lysophospholipase like 1 (LYPLAL1),
            transcript variant X2, mRNA.
ACCESSION   XM_032603966
VERSION     XM_032603966.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5095
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5095
                     /gene="LYPLAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739558"
     CDS             116..775
                     /gene="LYPLAL1"
                     /codon_start=1
                     /product="lysophospholipase-like protein 1 isoform X2"
                     /protein_id="XP_032459857.1"
                     /db_xref="GeneID:116739558"
                     /translation="MAQTKDACLNLCIPSAAQGDSGQGLRTWIEQVLNQDFTFQHVKV
                     IYPTAPPRPYTPLKGGFSNVWFDRFQISNDCPEHLESIDVMCQVLTDLIDGEVRSGIK
                     KNRILVGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKTSAVYQALQKSDGVLPELF
                     QCHGTADELVLHSWGEETNSVLKSLGVRTKFHSFPGVYHELSKAELEKLKSWILTKLP
                     D"
     misc_feature    170..754
                     /gene="LYPLAL1"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; Region:
                     alpha/beta hydrolases; cl21494"
                     /db_xref="CDD:473884"
ORIGIN      
        1 gctcgtgaat ctctagtcgt ggcggcagtc atggcggctg cgtcgggttc agttcgctta
       61 cagcgctgca tggtgtcgcc ggcggggagg cacagcgcct ctctgatctt cctgcatggc
      121 tcagactaag gacgcttgtt tgaatctttg catccctagt gcggcccagg gtgattctgg
      181 acaaggattg agaacgtgga tcgagcaagt tttaaatcaa gatttcacat tccaacatgt
      241 aaaagttatt tatccaacag ctcctcccag gccatatact cctttgaaag gaggattctc
      301 caatgtatgg tttgacagat ttcaaatatc taatgactgc ccagaacacc ttgaatcaat
      361 tgatgtaatg tgtcaggtgc ttacagattt gattgatggt gaagtaagaa gtggtatcaa
      421 gaagaacaga atattagtag gaggattttc tatgggaggg tgcatggcaa tgcatttagc
      481 atacagaaat catcaagatg tggcaggagt atttgctctt tctagttttc tgaataagac
      541 atctgctgtt taccaggctc ttcagaaaag tgatggtgtc ctccctgaat tatttcagtg
      601 tcatggtacc gcagatgagt tagttcttca ttcttggggt gaagagacaa actcagtgtt
      661 aaaatctcta ggagtgagga caaagtttca tagtttccca ggtgtttacc atgagttaag
      721 caaagctgag ctagaaaaac tgaagtcatg gattcttaca aagctaccag actgaatgag
      781 tcaagattga tttgttaata tatgagtaat gtctttatga aaagtgattt ttactgccaa
      841 attctaattt gataaacaat aattaaaata ttaaaaaata tcagcagttt actgacttat
      901 tagttattga aatgcttagc accatagaga gtagtataat cttattaatg gttaacgtta
      961 atttaggcaa acatctgtgt attatttggc agatacattt ttataaatat ttgaaggcct
     1021 tgtaagtaag taaatattga aatattagaa agtaattaaa ctagcttaaa taaaggcaat
     1081 gagaaaccag gaaaagtttt aacatgatat tattttatct ttgttatcac tttgtttaaa
     1141 ttgcctttcc ggagatattc atgctcgtgt agtttttgac agaataacat tagtacccca
     1201 catttataga gtagtttccc gttacctcac ctgaccatca caagagcttg atgaagcaga
     1261 ctgagtagtt gttactggta ttttataata gggatagaaa gattgaaaac tttcccaaag
     1321 ccccaagagt aaaaactaga atccagacct tctggtccca gtggagctcc ctttctctga
     1381 gaccagattg ctgctctgct ccagtcctag ggttccggtt gctcttcaga tccttgtcag
     1441 cactcagtat ggccagtctt ttcagtttta tccattctag tgggtataca gtggtaacac
     1501 tttgtggttt taatctgcat tttcctaacc taatgatgtt aagcaatttc tatatgctta
     1561 tttgtgatct gtataaattc tgatgatatc tctattcaga tcttttgccc attttttatt
     1621 agggcattgt aagagcttgc attgtaagag ctgtttatat atgctggata gaagtccttt
     1681 gttagccaga tgttttacct tttttttttt tcttagtctg tggcttgcct tattttcttt
     1741 acagtgtaat tcaaaagagc agaagttttt aatttgatga cgtccagttt attcattttt
     1801 tttcatttat actttgtgct tttgatgtca tatttaagca atcttaagaa atcctaggtc
     1861 actaagattt tctcgtatat tttcttcaac taatacactc ctttagtgct ataaatcttc
     1921 ccgcaagtat tatattagca acatcccacg atctttttat attttgtgtt ttcattttca
     1981 ttcaggtcaa atctttctaa attccctttt gatttcttct ttaacccttg ggttacttaa
     2041 aattgtgtta ttttgtttca gtatattggg aattttctag agatctttgc tattgatttc
     2101 taagttaatt ccattgtggg tcaagagagc atactttgta tggcttgaaa ccttttaaat
     2161 ttattgtgac ttgttttata gcccagaaga tggtctatct tggtaaatgt tttgtgtgca
     2221 ctttagaaaa atatgtatga tgctagtgtt gggtggagtg ttctctacat atcagtcagg
     2281 tcaagttggt tgatatcctt gtttaaatct acgatatcct tgctgatttt ctgcctgctt
     2341 gttttataaa ttattgagag gggaatattg aacgttccaa gtataactga atttgtttca
     2401 ctttgccatt ccctcagttt ttgcttcatg tactatgagg ctccattatt agatgcgcaa
     2461 acatgtagga ctattatgtt cccctgatga actggcctct tcttctttat gaactgatca
     2521 tctctatccg tgatagattt ttttgctctg aaatactcat tgtgtgatat tgatatagtc
     2581 cttccagctc cctttagact agcatctttt tccatacttc tcttttaacc tatttgtgtc
     2641 tttatccgta aagagcaatg ccatcaggca gagcacagtt aggccttcct tttctatcca
     2701 gtatgatcat ccctgctttt taattgatta tttagaacat tttaatgtga ttgttggcat
     2761 gtttggattt caagctacca tcttaactgt ttatgttctc tatattccat ctcttcttct
     2821 ttgctccctt attcctctct ttctactccc cctttttttc ttggattatg tgttcttttg
     2881 ctggcttctt agttatgata ctttgtactt ttattttaat gattacttta gggtttatag
     2941 catataattt ttataaactt cttaaaattt tgaaataatt acaagctcac aggaagtgtt
     3001 aacggtagta cagaggagcc ccatgtaccc tgcgcccagt ggttacatct tacataacta
     3061 tagtataatg tcaaaaccag gaaactgaca ttggtacaat gtgtgtgtat agttatatgc
     3121 catttttcca catggctgca tggattcatg tatccaccac tacaatcaat atgcagaact
     3181 gttccatcac cacaaagatg cccattgtgc tgcctatagt catatccatc ccttcctctg
     3241 tcaccatcta acccataaca accactgatt tgtactccat ctctataact ggacattgtg
     3301 agaatgttat agaagtagaa ctatacagta tgtgacattt tgagattgac ttttttcact
     3361 ccatccaaat tgttgcaacc atcaatagtt tacttctttt tattgctgca tagtatgcca
     3421 tgacatgaat gtattcagta ttatagtttg ttaaactgtt ctccaattaa aacacagttt
     3481 ttttggctat tacgaataaa gctgccttga acactcttgt atagattttc gtctagccgt
     3541 aatttttttt ctctctggga taaataccca acagagtgat tcctgggttg tataataagt
     3601 gtatgtttaa gaaactacca gacttttcca gagtagctgt gccaacttat attcctacca
     3661 gcaaggcagg agagataaat attctctgca tcctcatcag cattttgtag tttcactatt
     3721 ttttttttat tttagctgtt ctaataggta tataatgaaa tctcattgtg gtcaaaatgt
     3781 gcattcccta atggctagtg attttgagcc tattttcata agcttacttg ccatctctat
     3841 atactatttg gtagatgttt cttcatgtct tttgcccatg atcaaattgg attttctttt
     3901 tgtttgcgtt aactgttgag ttttgaaagt ttcttttaat atcttctaga tgtgagtctt
     3961 ttgttagtta tatagttttc aaatattttt tcactgtctg tagcttgtct ttgcaacttc
     4021 ttaggtcctt ttatgcaaaa gttctaaatt ttaatgaagt ccagtttact gactttttct
     4081 ttcgtggatt atgcttttgg tgttagtgag ctattgtgag ttaatttttg tacaaggtgt
     4141 gagatttagg ttgacattca ttttgttttt gcctatagat accaagttgc ccagcactgt
     4201 ttggtgaaaa aactatcctt cattgaatta tttttgtacc tttatcaaaa atcagttgtc
     4261 tgttgcttgt gtgtctgttt cttgtttatc tgttctgttc cattgatctc tgtgtctgtc
     4321 cacataacgt taattactat agttatgtaa ttcttgcagt cagttacagt taattcttcc
     4381 taatatattc tccttttcaa aattgtatta gctattttag ttcccttcct ttccatataa
     4441 attttaaaat acactaatct atatccaccc aagaaatctt gctggaattt tgaaaggaag
     4501 tgtgttaaat ttgtataaca atttagagag aattgacatc ctttccatat tgaatcttcc
     4561 aattcatgaa catgatatat tactccactt atttaggtct tctggagttt ctttcattat
     4621 ttttttatag catttaacac acaagttctg tacatgtttt gttagatttg tacctgagta
     4681 ttttattttt tgaggaatta taaatggtac tgtattatta aatacagttt ccctgtgtac
     4741 attgctagct tattgaaata cagttgtttt ttgtgtgggt gtcttatatc atatgatctt
     4801 gtttaggtca gttactaatt ctaggaggtt ttctgtaaat tccttgggat tttctacaaa
     4861 gaaaatgtca cttgcaaatt ggaatcaatt tatttcttcc tttccaaatg aagtccttgt
     4921 atttcctttt cgttgcttat tacactggct agaacttcca gcaccatgct ggatgagaac
     4981 cgtgagagca gacatccttg tcttgttccc agccttaggg ggaaagcatt cagtctttca
     5041 ttggtaaata tgttagctgt agggtttttt gtagatgttc tttatcaagt caatg
//
LOCUS       XM_032603974            1337 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA0040 ortholog (KIAA0040), mRNA.
ACCESSION   XM_032603974
VERSION     XM_032603974.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1337
                     /gene="KIAA0040"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739570"
     CDS             614..913
                     /gene="KIAA0040"
                     /codon_start=1
                     /product="uncharacterized protein KIAA0040 homolog"
                     /protein_id="XP_032459865.1"
                     /db_xref="GeneID:116739570"
                     /translation="MEKISTFFSAIWDTISAKHQEALFNSICLGILLGLPLVVIITLL
                     FICCHCCWSRAGKSGQQPERNKGKKKKKKKKAEEDLWISAQPKLLQMDKRPSLPV"
ORIGIN      
        1 ctgggccgtg tgcgcccaag tccaaggtca gccgtcctcc gtgggcccca gggtggcgag
       61 tttgggccga gcccagggag cgggagaagg agcgagtctg attcaggaag tcgagcctct
      121 gacatcaggg gcaggacgga gttggagtga aacctcaaaa atgcgaggcg tcggccagcg
      181 ggagggcagg gaacacagag ggcgcctttc tcaaagccgc aggcaggtac gcgcagcgca
      241 gggcggcccc cgctgaccct ccacctgggc ctggcccgcg cgggacccgc aggggcttcc
      301 agcgagacac caggacctcg tccctgcgcc cgatcgctgg tgcacgggca gcaccaggcg
      361 gacccccgag cgaccacgcc tgcaggaagc cctccagtgg actcaaggat ttcccccatt
      421 ttggagatga agaagctgag gcccaaagca actgaatgac cttcccgagg acgcatactg
      481 agtgctatcc gtggcatgcc caaacccaaa gctggtagag gaataagtta caagtgggca
      541 attctgcaac ctgtcacacc caggccttgc tggtgagctg agaggctcct ctggtcccat
      601 ctagccaagc accatggaga aaataagcac cttctttagc gccatctggg acaccatctc
      661 ggccaaacac caagaggccc tcttcaacag catctgtcta ggcatcctcc tgggtctgcc
      721 cctagtggtg attatcaccc tcctcttcat ctgttgccat tgctgctgga gccgggcagg
      781 caaaagtggc caacagccag agcgaaacaa ggggaagaag aagaagaaaa agaagaaggc
      841 tgaagaagac ctctggatct ccgctcagcc caagcttctc cagatggaca agaggccatc
      901 actgcccgtc tagttagaca ggaggcagaa gtgtcctccc ctgggggctc agctgccttc
      961 caaccacaca cagggtaggg aggagaaatc cctgaagtga tgcactcaca tccacagagg
     1021 agctactcaa ccaaggagca aacctcagac tgagtatccc cacggaggac attcccgggg
     1081 aacacatgga caagtcttag gtgctgtctc agcatctgtg tgtccaatag caatgctctt
     1141 tactacagac tcaggcatgc cttccaccca cctctggcac attccatatg caaaagcaca
     1201 aggaacattt atccatacat cttgacatat gtcccaaatg cacacatgca caccacacac
     1261 acacacacac acacacacat tcaggcaaca ggtacctgga caagtatata ctgttcatca
     1321 aatggtcact gaatgtc
//
LOCUS       XM_032603987            3396 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat neuronal 2 (LRRN2),
            mRNA.
ACCESSION   XM_032603987
VERSION     XM_032603987.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3396
                     /gene="LRRN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 18 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739579"
     CDS             582..2720
                     /gene="LRRN2"
                     /codon_start=1
                     /product="leucine-rich repeat neuronal protein 2"
                     /protein_id="XP_032459878.1"
                     /db_xref="GeneID:116739579"
                     /translation="MRLLVAPLLLAWVAGAIATVPVVPWHVPCPPRCACQIRPWYTPL
                     SSYREATTVDCNDLFLTAVPPALPAGTQTLLLQSNGIVRVDQGELGYLANLTELDLSQ
                     NSFSDTRDCDFRALPQLLSLHLEENQLTRLEDHSFAGLASLQELYLNHNQLYRIAPRA
                     FAGLSNLLRLHLNSNLLRAVDGRWFEMMPSLEILMIGGNKVDAILDMNFRPLAKLRSL
                     VLAGMNLREISDYALEGLQSLESLSFYDNLLARVPRRALEQVPGLKFLDLNKNPLQRV
                     GPGDFANMLHLKELGLNNMEELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHL
                     PQMETLMLNNNALSALHQQTVESLPNLQEVGLHGNPIRCDCVIRWANATGTHVRFIEP
                     QSTLCAEPPDLQRRPVREVPFREMTDHCLPLISPRSFPPSLQVASGESLVLHCRALAE
                     PEPEIYWVTPAGVRLTAARAGRKYRVYPEGTLELRRVTAEEAGLYTCVAQNLVGADTK
                     TVSVVVGRAPLQPGRGKGWGLELQVQETHPYHILLSWVSPPNTVSTNLTWSSASALQG
                     HRATAVARLPRGTHSYNITRLLQATEYWACLQVAFADAHTQLACVWARTKEATPCHRA
                     LGDQPGLIAILALTILLLAAGLAAHLGTGQPRQGVGGRPLLPAWAFWGWSTPSARVVS
                     APLVLHWNPGRKLPRSSEGETLSPPLSQNS"
     misc_feature    663..797
                     /gene="LRRN2"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    792..863
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    <834..>1553
                     /gene="LRRN2"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    864..935
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    936..1007
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1008..1079
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1080..1151
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1152..1223
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1224..1295
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1296..1367
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1368..1439
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1440..1514
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1509..1694
                     /gene="LRRN2"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    1515..1583
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1590..1661
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1605..>1841
                     /gene="LRRN2"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    1662..1700
                     /gene="LRRN2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1845..2123
                     /gene="LRRN2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1902..1916
                     /gene="LRRN2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1941..1955
                     /gene="LRRN2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    2019..2033
                     /gene="LRRN2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2061..2078
                     /gene="LRRN2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2100..2111
                     /gene="LRRN2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 aggggcgcga ggcgccgcgg aggcctgtcc gctgcacttg cgaacgggcg gagagcggaa
       61 ggagcgcacg atatcggtcg ccagcctccc gccgcacgcg cgggcgcggc gcgggtgggg
      121 cgcgggtggg aaggtggttg atctgccggc gccctaaccc ggctctgccc cgggaccact
      181 cccaggaaaa ctccgcggca gggaggcgcc cgcgacccca ccccggcctg cgcgggcggc
      241 gcgcggaggg agggcggact ggtcttcctc agcccagccc gggccggagc ggagcggagc
      301 ggtgcgcggc ggcgcaggcg gcggccggcg ggcggcggcc ggggggctgc cctgatgggg
      361 catggcaatg agtgagcaga ccgagcgcca gtggacaagg atggagagcc gcacccagga
      421 gggcaggaaa tgatgcccac ccatccctgc atagaatgac tgcccaggga gagtggttcc
      481 ccgggccctg gcagggctgc tgaccctcag cctgcaaacc gctaagagca cagggactcc
      541 agactcttct tgtggacggt cccctgccct gcagctccac catgaggctg cttgtggccc
      601 ccctcttgct agcttgggtg gctggtgcca ttgccaccgt gcccgtggta ccttggcacg
      661 tgccctgccc ccctcggtgt gcctgccaga tccggccctg gtatacaccc ctgtcgtcct
      721 accgcgaggc caccaccgtg gactgcaatg acctattcct gacagctgtg cccccggcgc
      781 tgcccgcagg cacgcagacc ctgctgctac agagcaacgg catcgtccgc gtggaccagg
      841 gtgagctcgg ctacctggcc aatctcacag agctggacct gtcccagaac agcttttcag
      901 acacccgaga ctgtgatttc cgtgccctgc cccagctgct gagcctgcac ctggaggaga
      961 accagctgac gcggctggag gaccacagct ttgcagggct ggccagcctt caggaactct
     1021 atctcaacca caaccagctc taccgcatcg ccccaagggc cttcgccggc ctcagcaacc
     1081 tgctgcggct gcacctcaac tccaacctgc tgagggccgt ggacggccgc tggttcgaga
     1141 tgatgcccag cctggagatc ctcatgatcg gcggcaacaa agtggacgct atcttggaca
     1201 tgaacttccg gcccctggcc aagctgcgca gcctggtgct cgcgggcatg aacctgcggg
     1261 agatctctga ctacgccctg gaggggcttc aaagcctgga gagcctctcc ttctatgaca
     1321 accttctggc ccgggtaccg cggcgggcgc tggagcaggt gcctgggctc aagttcctag
     1381 acctgaacaa gaacccgctc cagcgggtgg ggcccggcga ctttgccaac atgttgcacc
     1441 tcaaggagct ggggctgaac aacatggagg agctggtttc cattgacaag tttgccctgg
     1501 tcaacctccc tgagctgacc aagctggaca tcaccaacaa cccccggctg tctttcatcc
     1561 acccccgcgc cttccatcac ctgccccaga tggagaccct catgctcaac aacaatgctc
     1621 tcagtgcctt gcaccagcag acagtggagt ccctgcccaa cctgcaggag gtgggtctcc
     1681 atggcaaccc catccgctgt gactgtgtca tccgctgggc caatgccacg ggcacccatg
     1741 tccgcttcat cgagcctcag tccaccctgt gtgccgagcc accagacctc cagcgccgcc
     1801 cagtgcggga ggtgcccttc cgggagatga cggaccactg cctgcccctc atctcccccc
     1861 gcagcttccc ccccagcctc caggtggcca gtggagagag cctggtgttg cactgccggg
     1921 cgctggctga accagaaccc gagatctact gggtcactcc ggctggggtt cgactgacgg
     1981 ctgcccgggc aggcaggaag taccgggtgt accctgaggg gaccctggag ctgcggaggg
     2041 tgacagcgga agaggcaggg ctgtacacct gtgtggccca gaacctggta ggggctgaca
     2101 ctaagacggt tagtgtggtt gttggccggg ctcccctgca gccaggcaga ggcaagggat
     2161 ggggtctgga actccaggtg caggagactc acccctatca catcctgtta tcttgggtct
     2221 ccccacccaa cacagtctcc accaacctca cctggtccag tgcctctgcc ctccagggcc
     2281 acagggccac tgctgtggcc cgcctgccac ggggtaccca cagctacaac atcacccgcc
     2341 tccttcaggc cacggagtac tgggcctgcc tgcaagtggc ctttgctgat gcccacaccc
     2401 agttggcatg tgtatgggct aggactaaag aggccactcc ttgtcacaga gccttagggg
     2461 accaacctgg gctcatagcc atcctggctc tcaccatcct cctgctggca gccgggctgg
     2521 cagcccacct tggcactggc cagcccaggc agggagtggg tgggcggcct ctccttccag
     2581 cctgggcttt ctggggctgg agcaccccct cagcccgggt ggtatctgca ccccttgtcc
     2641 tgcactggaa tccggggagg aagctgccca ggtcctcaga aggggagaca ctgtcaccac
     2701 cattgtcaca aaattcctga agctcagcct gttctcagca gtagagaaat aactaggact
     2761 actttttacc aaaagggaag caatctgggc caggtaccct gccaggaaag taacatggat
     2821 ccacgtgctt gaggcctgca agctggacca agacagccag ctttgtggcc ctagggggtg
     2881 ctcctgcggc ctccagaaac tgccctcacc ttctgagggc tcctccgctg ccattctgag
     2941 gagcatctcc aaggaacagg aaggactctg gctaaagcgg cccacctccc cagttgtctg
     3001 tgtgcccagg ggctcctggg cctggatgtc ccctgcctgt gtcctcaggc ccttggcccg
     3061 caggatgcgc cccctcctct tctctgtctc tgtacagtct cagttgcttg ctcttccccc
     3121 ttctgggcaa gagctgaagg aggcctctcc tccccgcctc gggggactgc tcccaaagtg
     3181 gggccccagt tggatcagga ggacacgtgg gagagggatg cccaggaacg cctcttctgg
     3241 cacccttctg gcctgcactc tgaggatgac tttctatagg caattttgta cctttgtgga
     3301 gaaatgtgtc acctccccca acccagttca ttcttttctc ctgttttgta aaaaataaaa
     3361 ataaataaga ataacaataa taaggggagg ggaagg
//
LOCUS       XM_032603999            3714 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739584
            (LOC116739584), mRNA.
ACCESSION   XM_032603999
VERSION     XM_032603999.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3714
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3714
                     /gene="LOC116739584"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 79% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739584"
     CDS             1..3714
                     /gene="LOC116739584"
                     /codon_start=1
                     /product="uncharacterized protein LOC116739584"
                     /protein_id="XP_032459890.1"
                     /db_xref="GeneID:116739584"
                     /translation="MFTHQPTWDDCQQLLWILFTTEERERIQLEDDWNYNTGEGRGRL
                     LIYRQTLMAGLRAATRKPTNLAKPHGKISDKTSWVQGATGVKRYPWTTQRTVDLGTGK
                     VTHSFLVIPDSPCPLLGRDLLTKMGAQIHFRSEGPIITDPHNQPISVLTLNLEDEYRL
                     HQEPPSQNQDIKSWLQQFPEAWAERGGMGVAKHRPALFIEIKPGADPARVRQYPMPIE
                     AKTGITPHIRRLLDLGILRPCQSAWNTPLLPVRKPNSKDYCPVQDLREVNRRVIDIHP
                     TVPNPYTLLSALSPEKQWYTVLDLKDAFFSLPLAPKSQELFAFEWSDPERGINGQLTW
                     TRLPQGFKNSPTLFDEALHEDLSEYRRQNPNITLLQYVDDLLIAAGTAEACLQGTRNL
                     LQTLGTLGYRASAKKAQICRPEVTYLGYLLKGGQRWLTDARKETVLRIPRPTTPRQVR
                     EFLGSAGFCRLWIPKFAEMAKPLYLATKEQTPFEWTEEAEQSFQQIKTALLSAPALGL
                     PDVSKPFHLFVDENKGIAKAVLTQPLGPWTRPIAYLSKKLDPVAAGWPPCLRVIAATA
                     LMVKDANKLTMGQELHVTTPHAIDGVVKQPPDRWMSNARLVHYQGLLLNPLKISYTPP
                     RALNPASLLPDPDLDSPLHDCAEVLAQIHGVREDLRDQPLLDAQVTWFTDGSSFVQQG
                     QRYAGAAVTSETEVIWAKTLPPGTSAQKAELIALTQALKMSKDQKATIYTDSRYAFAT
                     AHIHGAIYRERGLLTAEGKDIKNKEEILALLAAIWEPKKLAIVHCPGHQKPTNPVARG
                     NNLADQTARKAAYTPIPLLPLQLPDPRPRELPPQPDYSEDDIRWINKLPLTQVKDGWW
                     RDAKNNILLPEKLGTLVLERIHRSTHLGARRLQDLIRQTGLKIKNVSEKTERLVAGCA
                     VCQLHNANTHPPTAGIRERGNQPRAYWEVDFTEVKPGKYGYRYLLVFIDTFSGWTEAF
                     PTKNETAQIVAKKLLEEILPRYGFPVMIGSDNGPAFVSKVSQDLASILGADWKLHCAY
                     RPQSSGQVERMNRTLKETLTKLTMETGANWVVLLPYALFRVRNSPYKLGFTPYEIIHG
                     RPPPIIPNLKTNLIQSDPENNLLSSLQALQRIHETIWPKLKELYTTGPPPTPHQLRPG
                     DWVLVKRHRQETLEPRWKGPYQIILTTPTAIKVDSIAAWIHYTHVKPVDPLSDLIKST
                     KADVTWTVDQSKDNPLKLTLRHTLPHEDQGINA"
     misc_feature    1..>225
                     /gene="LOC116739584"
                     /note="Gag P30 core shell protein; Region: Gag_p30;
                     pfam02093"
                     /db_xref="CDD:426597"
     misc_feature    <217..372
                     /gene="LOC116739584"
                     /note="Cellular and retroviral pepsin-like aspartate
                     proteases; Region: pepsin_retropepsin_like; cl11403"
                     /db_xref="CDD:472175"
     misc_feature    order(235..246,265..276)
                     /gene="LOC116739584"
                     /note="Active site flap [active]"
                     /db_xref="CDD:133159"
     misc_feature    619..1266
                     /gene="LOC116739584"
                     /note="A subfamily of reverse transcriptases (RTs) found
                     in sequences similar to the intact endogenous retrovirus
                     ZFERV from zebrafish and to Moloney murine leukemia virus
                     RT. An RT gene is usually indicative of a mobile element
                     such as a retrotransposon or...; Region: RT_ZFREV_like;
                     cd03715"
                     /db_xref="CDD:239685"
     misc_feature    order(637..642,742..744,784..795,802..807,1018..1020)
                     /gene="LOC116739584"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:239685"
     misc_feature    order(895..912,1015..1020,1111..1113,1117..1122,
                     1252..1257)
                     /gene="LOC116739584"
                     /note="putative active site [active]"
                     /db_xref="CDD:239685"
     misc_feature    order(895..912,1015..1017,1117..1119)
                     /gene="LOC116739584"
                     /note="putative NTP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239685"
     misc_feature    1453..>1650
                     /gene="LOC116739584"
                     /note="RNase H-like domain found in reverse transcriptase;
                     Region: RT_RNaseH_2; pfam17919"
                     /db_xref="CDD:465567"
     misc_feature    1528..1845
                     /gene="LOC116739584"
                     /note="RNase H-like domain found in reverse transcriptase;
                     Region: RT_RNaseH; pfam17917"
                     /db_xref="CDD:465565"
     misc_feature    2008..2430
                     /gene="LOC116739584"
                     /note="Bel/Pao family of RNase HI in long-term repeat
                     retroelements; Region: RNase_HI_RT_Bel; cd09273"
                     /db_xref="CDD:260005"
     misc_feature    order(2020..2031,2119..2127,2134..2136,2197..2199,
                     2350..2352,2419..2421)
                     /gene="LOC116739584"
                     /note="RNA/DNA hybrid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:260005"
     misc_feature    2593..2766
                     /gene="LOC116739584"
                     /note="Integrase zinc binding domain; Region:
                     Integrase_H2C2; pfam17921"
                     /db_xref="CDD:465569"
     misc_feature    2809..3096
                     /gene="LOC116739584"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:459897"
     misc_feature    3421..3675
                     /gene="LOC116739584"
                     /note="Murine leukemia virus (MLV) integrase (IN)
                     C-terminal domain; Region: MLVIN_C; pfam18697"
                     /db_xref="CDD:436671"
ORIGIN      
        1 atgtttactc atcagcccac ctgggatgac tgccaacagc ttctctggat cctgttcact
       61 accgaggaac gagaacgaat ccagctggag gatgattgga actacaacac cggagaaggt
      121 aggggacgac tgctcattta tcgccagact ctaatggcgg gtctccgggc tgccacgcgc
      181 aagcccacta atttggccaa gccccacgga aaaatttctg acaaaacctc ctgggtccag
      241 ggagctacgg gagttaaacg ttacccctgg accactcaga gaactgtgga cttgggcacg
      301 ggaaaagtaa cccactcctt tctggtcatt cccgatagcc cttgcccctt actggggaga
      361 gacttactta ctaaaatggg agcgcaaatt cattttcggt cagaggggcc gatcataaca
      421 gaccctcaca accaacccat atctgtgctc accctgaact tggaagatga gtaccgactt
      481 caccaggaac caccctccca aaatcaagat ataaagtcat ggcttcagca gttccccgaa
      541 gcatgggcag aaagaggtgg gatgggagta gccaaacatc gcccagccct attcatagaa
      601 atcaaaccag gggcagatcc tgcacgtgtc cggcaatatc ccatgcccat agaggccaaa
      661 actggtatca ctccacatat tcgccggctt cttgacctag gtatactgcg tccctgccag
      721 tcggcctgga acacacccct gctgccagtc cgcaaaccta acagtaaaga ctactgccca
      781 gtacaggacc tgagggaagt taacagacga gtcatagaca tccatcctac cgtacccaat
      841 ccatatactc ttttgagcgc ccttagtcca gaaaaacaat ggtatactgt gctggacctc
      901 aaagatgcct tttttagttt acccttagca cccaaaagtc aagaactctt tgccttcgaa
      961 tggtcggatc ccgagagagg cataaacgga caactcacct ggaccagact tccccaagga
     1021 ttcaagaact cacctacctt gtttgatgag gccctacacg aggatctcag tgagtaccgg
     1081 agacaaaacc ccaatataac cctcctgcag tatgttgatg atctcttaat agctgctggg
     1141 accgctgaag cctgcctgca gggaaccaga aacctcctac agactctcgg caccctggga
     1201 taccgggcct ctgccaaaaa ggcgcagatc tgcaggcctg aggtaactta cctgggatac
     1261 ctactgaaag gggggcaacg gtggctcaca gatgcaagga aagagactgt cctccgcatc
     1321 cccagaccca ccacgcctcg acaggtgaga gaatttttgg ggtcagctgg gttctgccgt
     1381 ttatggatac ccaaatttgc tgaaatggcc aaaccactat acttagccac caaagaacag
     1441 acgccctttg aatggacaga ggaggctgag caatcgtttc agcagataaa aactgccttg
     1501 ctatccgcac ccgccctggg tctccctgat gtctccaaac ccttccacct ctttgtggat
     1561 gaaaacaaag gcatagctaa ggccgtgttg acacaacccc tcggtccttg gaccaggcct
     1621 atcgcttacc tatcgaagaa attggacccc gtggctgcag gctggcctcc ttgcctccgg
     1681 gtgatcgccg ccacagccct aatggtaaag gatgccaaca aactaactat gggacaggaa
     1741 ttacatgtca ccacccccca cgccatcgac ggggttgtca aacagcctcc cgaccgatgg
     1801 atgagcaatg ctcgattggt ccactaccag ggtctactgt taaatcctct caaaatcagc
     1861 tacactccac cacgggcttt aaaccctgcc tctctattac ctgacccaga cttagactcc
     1921 ccactccatg attgtgcaga ggtactggct cagatccatg gggttcggga agacctacgt
     1981 gaccagcccc tattagacgc acaagtcaca tggttcactg acggcagtag ttttgtccag
     2041 caaggtcaga ggtatgcggg ggcagcagta acatcggaaa ctgaggtgat atgggcaaag
     2101 actctccccc cagggacctc agcccaaaaa gctgaattaa ttgccctgac ccaagctctc
     2161 aagatgagca aagaccaaaa agccaccata tatacagaca gccggtatgc tttcgctacc
     2221 gcacacatac atggggcaat ataccgagag cggggactac tcacagcaga gggcaaagac
     2281 atcaagaaca aagaggaaat cctggccttg ctagcggcca tatgggaacc caaaaagtta
     2341 gccattgtac attgcccggg gcatcaaaaa cccacaaatc cagtcgcccg gggcaacaat
     2401 ttggcagacc agacagctcg aaaggcggca tacactccaa taccattact tcccctacaa
     2461 ctgccggatc caaggccccg ggaattaccg ccccaacccg actactcgga agatgacatt
     2521 agatggataa acaaactccc tctaacccag gttaaagacg gatggtggcg ggacgctaag
     2581 aacaatatcc tccttccaga aaaactagga accttggtcc ttgaacggat ccatcgtagc
     2641 acccacttgg gcgcccgacg gctacaggat ctcatcagac agactggact taaaattaaa
     2701 aatgtctccg aaaaaactga acgactggtt gctggctgtg cagtctgcca actccataat
     2761 gctaacaccc acccaccaac cgctggcatc cgggaaagag ggaaccagcc cagagcctac
     2821 tgggaagtgg acttcacgga ggtaaagcct ggcaaatatg gatatagata tttactggtg
     2881 tttatagata ccttttcagg ttggactgag gcattcccga ccaagaatga gacagcacaa
     2941 atagtagcta aaaagctact agaagaaatc ctgcccaggt atggctttcc agttatgata
     3001 gggtcagaca acgggccggc cttcgtttct aaagtaagtc aggatctggc ttccatactt
     3061 ggggctgatt ggaaattaca ttgtgcgtac cgcccccaga gttcaggaca ggtagaaaga
     3121 atgaatagaa ctctaaaaga gaccttgact aaattaacca tggagactgg cgctaactgg
     3181 gtagtcctac tcccctacgc tctgtttagg gtgcgaaatt ccccctataa gctaggattt
     3241 accccctacg aaataataca tggtaggcct cctcctatta tccctaacct aaagactaac
     3301 cttatccaat cggacccaga aaataatctc ctgtcttccc tccaagcctt acagcggata
     3361 catgagacaa tctggcccaa actaaaagag ctatatacaa caggaccccc gcctactcca
     3421 caccagctcc gaccaggtga ctgggtcctt gtcaaacgcc atcgacaaga gaccctagaa
     3481 cccaggtgga aaggacctta ccagatcatc ctgacaacgc cgacggccat caaggtggac
     3541 agcatagctg cctggatcca ttacacccac gtcaagccgg tggacccact ttctgacctc
     3601 atcaagtcca ctaaagctga cgtcacctgg acggttgatc agagtaagga caatcccctc
     3661 aaactgacct tacgccatac cctcccccat gaggaccaag gaatcaatgc atag
//
LOCUS       XM_032604014             429 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus group IIE secretory phospholipase A2-like
            (LOC116739588), mRNA.
ACCESSION   XM_032604014
VERSION     XM_032604014.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..429
                     /gene="LOC116739588"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins"
                     /db_xref="GeneID:116739588"
     CDS             1..429
                     /gene="LOC116739588"
                     /codon_start=1
                     /product="group IIE secretory phospholipase A2-like"
                     /protein_id="XP_032459905.1"
                     /db_xref="GeneID:116739588"
                     /translation="MKLPLLLTLFCLMVALAVGNLVQFGVMTERMKGQPALQYIDYGC
                     YCGFGGSHGPVDQTDWCCHAHDCCYGSLEKLGCEPILEMYLFSASRHSIFCGGRTTCQ
                     KQTCECDKRAALCFRDNLGTYDRKYARYPNKLCTGPTPPC"
     misc_feature    58..405
                     /gene="LOC116739588"
                     /note="Phospholipase A2, a family of secretory and
                     cytosolic enzymes; the latter are either Ca dependent or
                     Ca independent. PLA2 cleaves the sn-2 position of the
                     glycerol backbone of phospholipids (PC or
                     phosphatidylethanolamine), usually in a
                     metal-dependent...; Region: PLA2c; cd00125"
                     /db_xref="CDD:153091"
     misc_feature    order(61..63,70..72,82..84,109..111,142..144,238..240)
                     /gene="LOC116739588"
                     /note="putative hydrophobic channel [active]"
                     /db_xref="CDD:153091"
     misc_feature    order(133..135,139..141,145..147,196..198)
                     /gene="LOC116739588"
                     /note="primary metal binding site; other site"
                     /db_xref="CDD:153091"
     misc_feature    order(139..141,193..198,205..207,250..252,325..327)
                     /gene="LOC116739588"
                     /note="catalytic network [active]"
                     /db_xref="CDD:153091"
ORIGIN      
        1 atgaagcttc cccttcttct gaccttattt tgcctcatgg tggccctggc tgttgggaac
       61 ctggtccagt tcggggtgat gactgagaga atgaaggggc agcctgcact gcagtacatt
      121 gactacggct gctactgtgg tttcggcggc tcccacgggc cagtggacca gacagactgg
      181 tgctgccatg cccatgactg ctgctatggg agtctggaga agctgggctg tgaacccata
      241 ttggaaatgt atcttttctc tgccagcagg cacagcatct tctgtggcgg cagaaccacc
      301 tgccaaaaac agacctgcga gtgtgacaag agggctgctc tctgctttcg cgacaacctg
      361 ggcacctacg accgcaaata tgcccgttac cccaacaagc tgtgcaccgg acctacccca
      421 ccctgctaa
//
LOCUS       XM_032604025             483 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipase A2 group IID (PLA2G2D),
            mRNA.
ACCESSION   XM_032604025
VERSION     XM_032604025.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..483
                     /gene="PLA2G2D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 Proteins"
                     /db_xref="GeneID:116739595"
     CDS             1..483
                     /gene="PLA2G2D"
                     /codon_start=1
                     /product="group IID secretory phospholipase A2"
                     /protein_id="XP_032459916.1"
                     /db_xref="GeneID:116739595"
                     /translation="MEGDFQQLPPPLCAGIMRLASLCMLVVFAGVIPAQGGILDLNKM
                     IRQETGKRPIFYFLYGCHCGFGGKGQPKDATDWCCHIHDCCYRHLQYHKCNIYLDRYS
                     YKFSQGNIQCSDKGSWCEQQLCTCDKELALCLQRNLDTYKNHLRYYWRPSCKGQTPTC
                     "
     misc_feature    109..459
                     /gene="PLA2G2D"
                     /note="Phospholipase A2, a family of secretory and
                     cytosolic enzymes; the latter are either Ca dependent or
                     Ca independent. PLA2 cleaves the sn-2 position of the
                     glycerol backbone of phospholipids (PC or
                     phosphatidylethanolamine), usually in a
                     metal-dependent...; Region: PLA2c; cd00125"
                     /db_xref="CDD:153091"
     misc_feature    order(112..114,121..123,133..135,160..162,193..195,
                     289..291)
                     /gene="PLA2G2D"
                     /note="putative hydrophobic channel [active]"
                     /db_xref="CDD:153091"
     misc_feature    order(184..186,190..192,196..198,247..249)
                     /gene="PLA2G2D"
                     /note="primary metal binding site; other site"
                     /db_xref="CDD:153091"
     misc_feature    order(190..192,244..249,256..258,301..303,379..381)
                     /gene="PLA2G2D"
                     /note="catalytic network [active]"
                     /db_xref="CDD:153091"
ORIGIN      
        1 atggaagggg acttccagca gctgcctcca ccgctctgtg ctgggatcat gcgacttgcc
       61 tcgctgtgca tgctggtggt gtttgctggt gtgattccag cccagggcgg gatactggac
      121 ctgaacaaga tgatcagaca agagacgggg aagagaccca tcttctattt cctctatggc
      181 tgtcactgcg gatttggtgg caaaggccaa cccaaagatg ccacagactg gtgctgccac
      241 atccatgact gctgctaccg tcacctgcag taccacaaat gcaatattta cttggatcgc
      301 tacagctaca agttttccca ggggaacatc cagtgctctg acaaggggag ctggtgtgag
      361 cagcagctgt gcacctgtga caaggagctg gcgctctgcc tgcagcggaa cctggacacc
      421 tacaagaacc acctgcgtta ctactggcgg cccagctgca agggccagac ccccacgtgc
      481 tag
//
LOCUS       XM_032604038             746 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipase A2 group V (PLA2G5), mRNA.
ACCESSION   XM_032604038
VERSION     XM_032604038.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..746
                     /gene="PLA2G5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 86% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739599"
     CDS             1..417
                     /gene="PLA2G5"
                     /codon_start=1
                     /product="calcium-dependent phospholipase A2"
                     /protein_id="XP_032459929.1"
                     /db_xref="GeneID:116739599"
                     /translation="MKGLLTLAWFLACSAPAVPGSLLQLKLMIEQVTRKPALMSYGFY
                     GCYCGWGGRGTPKDCTDWCCWMHDHCYAWLEKKGCNALTQVYRYRVACGLVTCERGSL
                     CQMQLCACDRHFVYCLKRNMRSYNPLYQYFPNFLCI"
     misc_feature    64..390
                     /gene="PLA2G5"
                     /note="Phospholipase A2; Region: Phospholip_A2_1;
                     pfam00068"
                     /db_xref="CDD:459659"
ORIGIN      
        1 atgaagggcc tcctcacact ggcttggttc ctggcttgta gtgcgcctgc tgtcccaggg
       61 agcttgctac agctgaagct gatgattgag caggtgacca ggaagcccgc cctgatgagc
      121 tatggcttct acggctgtta ctgcggctgg gggggtcgag ggacccccaa ggattgtact
      181 gattggtgct gttggatgca tgaccactgc tacgcatggc tggagaaaaa aggctgcaat
      241 gccttgacac aggtgtacag atacagagtt gcatgcggcc tggtcacctg tgaacgtggg
      301 tccctctgcc agatgcagct ctgcgcctgt gaccggcatt tcgtctactg cctgaaaaga
      361 aacatgagga gctacaaccc tctttatcaa tactttccca acttcctctg catctagtcg
      421 cctcagtgag ctcctcctgg accaagattc ttacaccctc tcctacagca cagagcttac
      481 ccactctgct ggaatcccca gagaggctcc caggtctggg acctcattct ttcttgatgt
      541 cccactgggc tcggaggagg cccacagcca cacttcatcc tccagagttc caggagagtg
      601 actctcgtca ttagacttgg caaggtcagg gtccccggcc tccccttgtg agatcagccg
      661 ctctggtgcc gaaagctcgc ccttcactcc aggccagctg tgtttctcct catccctgaa
      721 gacagccctg cttctccagg agggag
//
LOCUS       XM_032604052            1790 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus penta-EF-hand domain containing 1 (PEF1),
            transcript variant X1, mRNA.
ACCESSION   XM_032604052
VERSION     XM_032604052.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1790
                     /gene="PEF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 7 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739603"
     CDS             121..993
                     /gene="PEF1"
                     /codon_start=1
                     /product="peflin isoform X1"
                     /protein_id="XP_032459943.1"
                     /db_xref="GeneID:116739603"
                     /translation="MASYPYGQGCPGAGGQAPGAPPGSYYPGLPHAGGQYASGVPPGG
                     GYGGGPAPGGPYGPPAGGGPYAHPNPGGLPSGTPGGPYGGAAPGGPYGPPPPNSYGAQ
                     HPGPYGQGTPPPGGTPPNVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDE
                     TCLMMMNMFDKTKSGHIDVYGFSALWKCIQQWKNLFQQYDRDCSGSISYTELQQALSQ
                     MGYNLSPQFTQLLISRYCPRSASPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL
                     SFEDFVTMTASRML"
     misc_feature    490..987
                     /gene="PEF1"
                     /note="EF-hand, calcium binding motif, found in peflin and
                     similar proteins; Region: EFh_PEF_peflin; cd16184"
                     /db_xref="CDD:320059"
     misc_feature    490..579
                     /gene="PEF1"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320059"
     misc_feature    order(517..519,523..525,529..531,550..552,718..720,
                     724..726,730..732,751..753)
                     /gene="PEF1"
                     /note="putative Ca binding site [ion binding]; other site"
                     /db_xref="CDD:320059"
     misc_feature    601..690
                     /gene="PEF1"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320059"
     misc_feature    691..783
                     /gene="PEF1"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320059"
     misc_feature    799..891
                     /gene="PEF1"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320059"
     misc_feature    892..987
                     /gene="PEF1"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320059"
ORIGIN      
        1 gcgcctagga ttgatagttg cggacatcca atcagaatag gccccgcccc cacgcccagg
       61 aggaggcggg tttgagacgg aaagtcccgc cccacggcga cgtgagacgt cagagtcgcc
      121 atggccagct acccgtacgg gcagggctgc ccaggagctg gaggacaagc acccggagcc
      181 cctccgggta gctactaccc cggactcccc catgctggag ggcagtatgc tagcggggta
      241 ccccctggtg gcggatatgg aggaggtcct gcccctggag ggccttacgg accaccagct
      301 ggtggagggc cctatgcaca ccccaaccct ggggggctcc cttctggaac tccaggagga
      361 ccgtatggtg gcgcggcccc agggggcccc tatggaccac cacctccaaa ttcctatggt
      421 gcccagcatc ccgggcctta tggacaggga acacctcctc caggtggcac ccctcccaat
      481 gtggatcctg aggcttactc ctggttccag tcagtggact ccgatcacag tggctatatc
      541 tccatcaagg agctgaagca ggccctggtc aactccaact ggtcctcgtt caacgacgag
      601 acctgcctca tgatgatgaa catgtttgac aagaccaagt caggccacat tgatgtctac
      661 ggtttctcag ccctgtggaa gtgcatccag cagtggaaga acctcttcca gcaatatgac
      721 cgggactgct cgggctccat tagctacaca gagctgcagc aagctctgtc ccagatgggc
      781 tacaatctga gcccccagtt cacccagctc ctgatctccc gctactgccc gcgctctgcc
      841 agtcctgcca tgcagctaga tcgcttcatc caggtgtgca cccagctgca ggtgctgacc
      901 gaggccttcc gggagaagga cacagctgtg cagggcaaca ttcggctcag cttcgaggac
      961 ttcgtcacca tgacagcttc tcggatgcta tgaccagccc atctgtaaag tggggagtgc
     1021 accaagggac ttttcctggc tcctagggtg ggagaagcat gtgggcctct cttcatttcc
     1081 tgcccttcct agaaaaagaa ttctcccctg cctgattcag cattgttccc aaagagggct
     1141 gggagtctgt gtcatagcca ccaggtagtg gggacctggg ctgagaccac acaggtaggg
     1201 gcctgaccta ggagaggact ggaaattgaa tgtcctttta catccctgag tatttaaatg
     1261 gcacagcctt gcgccaggtg ccagagatgc tggtcattgc aatggagtta gtgtccagtc
     1321 agctgactcc agactctagc ttttccttct atgccctgat gccagcggta agtgttcatc
     1381 aacctcttaa cgattagcac ctgcgttccc tcacccacgc tgtcttgtca gatgaaccca
     1441 gtttctccaa aatggaatct gaccagggtg agagatttgc ccatgggacc agtggcttgg
     1501 attccacccc ccacaagtcc gtgtgtgttg acttctagct gcctgttcag ggaccttggg
     1561 cagtctgctc tctgggcatc tttggccagg ctacccctct gcagcttgga cccctcatac
     1621 ttgcctgcca tcctctgctt ggcttcagtc cccgggggac aagttgctac ctcccactgc
     1681 caatgctttt ttttttttat ttgtggttgt tttcatttgg ggccaaaagt ttggtgcaac
     1741 tgtaagcttc agtacaagaa taaaactctg gagtttcgca ttttacacca
//
LOCUS       XM_032604061            1649 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus penta-EF-hand domain containing 1 (PEF1),
            transcript variant X2, mRNA.
ACCESSION   XM_032604061
VERSION     XM_032604061.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1649
                     /gene="PEF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739603"
     CDS             122..850
                     /gene="PEF1"
                     /codon_start=1
                     /product="peflin isoform X2"
                     /protein_id="XP_032459952.1"
                     /db_xref="GeneID:116739603"
                     /translation="MASYPYGQGCPGAGGQAPGAPPGSYYPGLPHAGGQYASGVPPGG
                     GYGGGPAPGGPYGPPAGGGPYAHPNPGGLPSGTPGGPYGGAAPGGPYGPPPPNSYGAQ
                     HPGPYGQGTPPPGGTPPNVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDE
                     TCLMMMTLSQMGYNLSPQFTQLLISRYCPRSASPAMQLDRFIQVCTQLQVLTEAFREK
                     DTAVQGNIRLSFEDFVTMTASRML"
     misc_feature    491..844
                     /gene="PEF1"
                     /note="The penta-EF hand (PEF) family; Region: EFh_PEF;
                     cl25352"
                     /db_xref="CDD:355382"
     misc_feature    491..580
                     /gene="PEF1"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320054"
     misc_feature    order(602..604,608..610,656..658,665..667,674..685,
                     719..721,731..733,740..745,752..757,764..766,791..814,
                     818..838)
                     /gene="PEF1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:320054"
     misc_feature    656..748
                     /gene="PEF1"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320054"
     misc_feature    752..838
                     /gene="PEF1"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320054"
ORIGIN      
        1 tgcgcctagg attgatagtt gcggacatcc aatcagaata ggccccgccc ccacgcccag
       61 gaggaggcgg gtttgagacg gaaagtcccg ccccacggcg acgtgagacg tcagagtcgc
      121 catggccagc tacccgtacg ggcagggctg cccaggagct ggaggacaag cacccggagc
      181 ccctccgggt agctactacc ccggactccc ccatgctgga gggcagtatg ctagcggggt
      241 accccctggt ggcggatatg gaggaggtcc tgcccctgga gggccttacg gaccaccagc
      301 tggtggaggg ccctatgcac accccaaccc tggggggctc ccttctggaa ctccaggagg
      361 accgtatggt ggcgcggccc cagggggccc ctatggacca ccacctccaa attcctatgg
      421 tgcccagcat cccgggcctt atggacaggg aacacctcct ccaggtggca cccctcccaa
      481 tgtggatcct gaggcttact cctggttcca gtcagtggac tccgatcaca gtggctatat
      541 ctccatcaag gagctgaagc aggccctggt caactccaac tggtcctcgt tcaacgacga
      601 gacctgcctc atgatgatga ctctgtccca gatgggctac aatctgagcc cccagttcac
      661 ccagctcctg atctcccgct actgcccgcg ctctgccagt cctgccatgc agctagatcg
      721 cttcatccag gtgtgcaccc agctgcaggt gctgaccgag gccttccggg agaaggacac
      781 agctgtgcag ggcaacattc ggctcagctt cgaggacttc gtcaccatga cagcttctcg
      841 gatgctatga ccagcccatc tgtaaagtgg ggagtgcacc aagggacttt tcctggctcc
      901 tagggtggga gaagcatgtg ggcctctctt catttcctgc ccttcctaga aaaagaattc
      961 tcccctgcct gattcagcat tgttcccaaa gagggctggg agtctgtgtc atagccacca
     1021 ggtagtgggg acctgggctg agaccacaca ggtaggggcc tgacctagga gaggactgga
     1081 aattgaatgt ccttttacat ccctgagtat ttaaatggca cagccttgcg ccaggtgcca
     1141 gagatgctgg tcattgcaat ggagttagtg tccagtcagc tgactccaga ctctagcttt
     1201 tccttctatg ccctgatgcc agcggtaagt gttcatcaac ctcttaacga ttagcacctg
     1261 cgttccctca cccacgctgt cttgtcagat gaacccagtt tctccaaaat ggaatctgac
     1321 cagggtgaga gatttgccca tgggaccagt ggcttggatt ccacccccca caagtccgtg
     1381 tgtgttgact tctagctgcc tgttcaggga ccttgggcag tctgctctct gggcatcttt
     1441 ggccaggcta cccctctgca gcttggaccc ctcatacttg cctgccatcc tctgcttggc
     1501 ttcagtcccc gggggacaag ttgctacctc ccactgccaa tgcttttttt tttttatttg
     1561 tggttgtttt catttggggc caaaagtttg gtgcaactgt aagcttcagt acaagaataa
     1621 aactctggag tttcgcattt tacaccaca
//
LOCUS       XM_032604075            3488 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 5 (SH2D5),
            transcript variant X1, mRNA.
ACCESSION   XM_032604075
VERSION     XM_032604075.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3488
                     /gene="SH2D5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739612"
     CDS             152..1441
                     /gene="SH2D5"
                     /codon_start=1
                     /product="SH2 domain-containing protein 5 isoform X1"
                     /protein_id="XP_032459966.1"
                     /db_xref="GeneID:116739612"
                     /translation="MQKAGAGGRRASDCGPAPHRPRCITKLAQQYVGSFPVDDLDTQE
                     SAWLVQQQLWALKDCPRRRAVILKFSLRGLKIYSGEGEVLLMAHALRRILYSTWCPAD
                     CQFAFMARNPRSPASKLFCHLFVGSQPGEVQILHLLLCRSFQLAHLWQHPEERARPEP
                     CPGPVGDVPLKPLSGPGGTPGLVREPLGRDQLSQHVNALVSFGRLPAGGPGGSGKEPP
                     ESESRGGARHARLGNPYCSPTLVRKKAIRSKVIRSGAYRACTYETQLQLSAREAFPDA
                     WEAWPRGPGGPSCLVESEGSLTENIWAFTGISRPSALALLRRDVLGAFLLWPEPGTSG
                     QWCLSVRTQCGVVPHQVFRNHLGRYCVEHLPAEFPSLEALVEHHAGTERSLFCSLDMG
                     RLNPGYEEQDCGPEGRLPRTLRPLAHAKSEAELQGLG"
     misc_feature    218..604
                     /gene="SH2D5"
                     /note="Tensin-related Phosphotyrosine-binding (PTB)
                     domain; Region: PTB_tensin-related; cd13157"
                     /db_xref="CDD:269979"
     misc_feature    order(236..238,458..460,524..526)
                     /gene="SH2D5"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:269979"
     misc_feature    order(428..445,479..481,557..559,569..571)
                     /gene="SH2D5"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:269979"
     misc_feature    1055..1285
                     /gene="SH2D5"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cd00173"
                     /db_xref="CDD:198173"
     misc_feature    order(1076..1078,1130..1132,1196..1198,1199..1201)
                     /gene="SH2D5"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 gaggcggcag gggcggggcg ggctcccggg tgggcggtgg agacgctcgg ggctgcgcgg
       61 gggtcgcagc gccgagctgc aggacgggac ttgagacgcg gctgccgcgc cttctctcct
      121 gcggaccctg aagccgggca ccctgggggc catgcagaag gccggggcgg ggggccggag
      181 agcctccgac tgcggccctg cccctcaccg gcccaggtgc atcaccaagt tggcccagca
      241 gtacgtgggc tccttccccg tggacgacct ggacacccag gagagcgcgt ggctggtgca
      301 gcaacagctg tgggcactga aggactgtcc ccgccgccgg gctgtcatcc tgaaattcag
      361 ccttcggggc ctcaagatct acagcgggga gggtgaggtg ctcctgatgg ctcacgccct
      421 gaggcgcata ctctactcta cctggtgccc agccgactgc cagtttgcct tcatggcccg
      481 aaatccccgg agcccggcca gcaagctctt ctgccacctc tttgtgggca gccagcctgg
      541 agaggtccag atcctgcacc tgctgctctg ccgctccttc cagctcgctc acctctggca
      601 gcaccctgag gaacgggcac ggcctgagcc ctgcccggga cccgtagggg acgtgcccct
      661 gaagcccctg tcgggccctg ggggcacccc tggcctagta cgggaacccc tcggccgtga
      721 tcagctctca cagcacgtta acgcgctggt ctccttcggg cggctgccag caggggggcc
      781 tgggggcagt gggaaggagc cgccggagtc ggaaagccgc gggggcgccc gccacgcccg
      841 cctggggaac ccgtactgct cgcccacgct ggtgcgcaag aaggccatcc gcagcaaggt
      901 gatccgctcc ggggcctacc gcgcctgcac ctacgagacg cagctgcagc tgtcggctcg
      961 ggaggccttt cctgacgcgt gggaggcctg gccccggggt cctgggggcc cctcatgcct
     1021 ggtggagagc gagggcagcc tgacggagaa catctgggct tttactggca tctcgaggcc
     1081 cagtgccctc gccctgctgc ggagagacgt gcttggggcc ttcctgctgt ggcctgagcc
     1141 aggcaccagt ggccagtggt gcctgtcggt gaggacacag tgcggcgtgg tgccccacca
     1201 ggtcttccgg aaccacctag gccgctactg cgtggagcac ctgccggctg agttccccag
     1261 cctggaggcc ctggtggagc atcacgctgg gacggagcgc agcctcttct gctccctcga
     1321 catgggccgc ctgaaccccg gctacgagga gcaggactgc gggcccgagg gcaggcttcc
     1381 ccggacgctc cggcccctcg cccatgccaa gtccgaggca gaactgcagg gcctgggcta
     1441 ggacgctagg agccccacgc caagaggccc cgcctcaccc tggctcctgg gcctcagcag
     1501 gctgctctgc tctgcccttc tgtctccccg ctgggcacca gttctgtcca gtcattgccc
     1561 tttggaccag tcttccatca ctaccctgcc tgtgggcgga gccccgagag tggggattgc
     1621 cagtggcttc tcacacggcc tctcaggatt gcaggagggg caggcagagc tccaggcttc
     1681 cgtgaacttg ctgggtgact atgggtgctt gtcttctctg ggcttcacct tactcctagg
     1741 tggggagctt tccaagatgg gtgggaaggt ttgctccaac agaggtggag ccctctccta
     1801 aggaggccag gccctggggc cctgactggg catctccaga gagctcctga cccaggcagc
     1861 cagacgtgtg agggagaggt atctggggag gcaggagtga gttctcactt tgggcgaagg
     1921 catggggacg agccaccctc tccgtgagag aaacagggat gacgtgatgg agcttggagg
     1981 ctacatccag gctgacggag cgaggcctgt ttcccatgtc ctttgaggct aaaggagtct
     2041 tcccttgagt tctgaagagt gggggttaag agggtgcaga aagggcagga cggacaaaga
     2101 gccgtgccac ccaaagccca catgcaggtg gatgcctgtg tgcagagagg gatgtgaatg
     2161 ggccgacggg gcagaggatc tcagtgaacc ttcagactag gaaggctggt tcttctccac
     2221 tcaaatccat gggcttgtgg ttcctgctta cttggaaggg atgtcccagt ctcatcccca
     2281 cccacacact cctgcccgcc cccaggctca ctttctttgg ccatttgaca gggaggggcc
     2341 agcagtgagc tgcaggctta gaggggtgac cagggtcctg ctccactcat cctgccggcc
     2401 agactgggtt tggtggctgc ctgggaagcc ccccaatggt ggcatttccc ttaatgggca
     2461 tctgtcaggg gccacttcac taggccagcc cccttgggga tgggggtcag ggaggaatca
     2521 tccaaagata gaacagatgt gggccctgcc agagggtact tggcctcagc ggcagtgggg
     2581 gtccatccag ggaaataacg ctagtctaag gcagtggccc tgcggtgatt gacgacggat
     2641 ccgggtattc ccctgtataa gtaaacttga cagacaggcg tgaatctacc agattaagat
     2701 agggagcaag ttcactttgg atgaacttct attcctgagg cagaggccaa gtcatgagtc
     2761 tgggggctgc cctctacccc atctggggag gggatgtgac cgctcagcat cttgaaagta
     2821 acagacttct gactcctgga aggaagaggg caaccccaac ggaataaaaa gaagggagga
     2881 gcctcagaag ttcaggcctg gtgttcccag cttacaacct ccggctcagc aaatggtctt
     2941 ggctggggcc ttgtcactct tgtcacaagg gataggagga ggctgtcctt tgggggctct
     3001 tttcactgga accacagtac tgattttata ctgaatgtga gtgggaaccc agcctcattt
     3061 tacggccatt actaccagaa cccatctcct ccctgggcaa agccctggtc cctcgtggga
     3121 ggccccaggc tcacattacc ctggcaagga gaggggtttg gtgacatggg gcccaggatt
     3181 acagccctgg agtctcacac atttaagaag acctgataac tggtcttaac ctctgtaagg
     3241 gatggatttt gttgcacaag ttatctgtgt ggacaaggtg tcaggaatgt tcccaaagta
     3301 ctttaacatt ccttcacaca gcatttatgg atcacacagt acaaaggttt ttgacccaca
     3361 cgtgcagacg cctccgtgtc tcaattatag accacagttt tctctgttcc aaccaatgcc
     3421 acctgggtag cccagctctc cttactgtgt ggacttgaaa taaataaagt gcatttcttc
     3481 ggattgta
//
LOCUS       XM_032604085            3485 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 5 (SH2D5),
            transcript variant X2, mRNA.
ACCESSION   XM_032604085
VERSION     XM_032604085.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3485
                     /gene="SH2D5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739612"
     CDS             152..1438
                     /gene="SH2D5"
                     /codon_start=1
                     /product="SH2 domain-containing protein 5 isoform X2"
                     /protein_id="XP_032459976.1"
                     /db_xref="GeneID:116739612"
                     /translation="MQKAGAGGRRASDCGPAPHRPRCITKLAQYVGSFPVDDLDTQES
                     AWLVQQQLWALKDCPRRRAVILKFSLRGLKIYSGEGEVLLMAHALRRILYSTWCPADC
                     QFAFMARNPRSPASKLFCHLFVGSQPGEVQILHLLLCRSFQLAHLWQHPEERARPEPC
                     PGPVGDVPLKPLSGPGGTPGLVREPLGRDQLSQHVNALVSFGRLPAGGPGGSGKEPPE
                     SESRGGARHARLGNPYCSPTLVRKKAIRSKVIRSGAYRACTYETQLQLSAREAFPDAW
                     EAWPRGPGGPSCLVESEGSLTENIWAFTGISRPSALALLRRDVLGAFLLWPEPGTSGQ
                     WCLSVRTQCGVVPHQVFRNHLGRYCVEHLPAEFPSLEALVEHHAGTERSLFCSLDMGR
                     LNPGYEEQDCGPEGRLPRTLRPLAHAKSEAELQGLG"
     misc_feature    218..601
                     /gene="SH2D5"
                     /note="Tensin-related Phosphotyrosine-binding (PTB)
                     domain; Region: PTB_tensin-related; cd13157"
                     /db_xref="CDD:269979"
     misc_feature    order(236..238,455..457,521..523)
                     /gene="SH2D5"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:269979"
     misc_feature    order(425..442,476..478,554..556,566..568)
                     /gene="SH2D5"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:269979"
     misc_feature    1052..1282
                     /gene="SH2D5"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cd00173"
                     /db_xref="CDD:198173"
     misc_feature    order(1073..1075,1127..1129,1193..1195,1196..1198)
                     /gene="SH2D5"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 gaggcggcag gggcggggcg ggctcccggg tgggcggtgg agacgctcgg ggctgcgcgg
       61 gggtcgcagc gccgagctgc aggacgggac ttgagacgcg gctgccgcgc cttctctcct
      121 gcggaccctg aagccgggca ccctgggggc catgcagaag gccggggcgg ggggccggag
      181 agcctccgac tgcggccctg cccctcaccg gcccaggtgc atcaccaagt tggcccagta
      241 cgtgggctcc ttccccgtgg acgacctgga cacccaggag agcgcgtggc tggtgcagca
      301 acagctgtgg gcactgaagg actgtccccg ccgccgggct gtcatcctga aattcagcct
      361 tcggggcctc aagatctaca gcggggaggg tgaggtgctc ctgatggctc acgccctgag
      421 gcgcatactc tactctacct ggtgcccagc cgactgccag tttgccttca tggcccgaaa
      481 tccccggagc ccggccagca agctcttctg ccacctcttt gtgggcagcc agcctggaga
      541 ggtccagatc ctgcacctgc tgctctgccg ctccttccag ctcgctcacc tctggcagca
      601 ccctgaggaa cgggcacggc ctgagccctg cccgggaccc gtaggggacg tgcccctgaa
      661 gcccctgtcg ggccctgggg gcacccctgg cctagtacgg gaacccctcg gccgtgatca
      721 gctctcacag cacgttaacg cgctggtctc cttcgggcgg ctgccagcag gggggcctgg
      781 gggcagtggg aaggagccgc cggagtcgga aagccgcggg ggcgcccgcc acgcccgcct
      841 ggggaacccg tactgctcgc ccacgctggt gcgcaagaag gccatccgca gcaaggtgat
      901 ccgctccggg gcctaccgcg cctgcaccta cgagacgcag ctgcagctgt cggctcggga
      961 ggcctttcct gacgcgtggg aggcctggcc ccggggtcct gggggcccct catgcctggt
     1021 ggagagcgag ggcagcctga cggagaacat ctgggctttt actggcatct cgaggcccag
     1081 tgccctcgcc ctgctgcgga gagacgtgct tggggccttc ctgctgtggc ctgagccagg
     1141 caccagtggc cagtggtgcc tgtcggtgag gacacagtgc ggcgtggtgc cccaccaggt
     1201 cttccggaac cacctaggcc gctactgcgt ggagcacctg ccggctgagt tccccagcct
     1261 ggaggccctg gtggagcatc acgctgggac ggagcgcagc ctcttctgct ccctcgacat
     1321 gggccgcctg aaccccggct acgaggagca ggactgcggg cccgagggca ggcttccccg
     1381 gacgctccgg cccctcgccc atgccaagtc cgaggcagaa ctgcagggcc tgggctagga
     1441 cgctaggagc cccacgccaa gaggccccgc ctcaccctgg ctcctgggcc tcagcaggct
     1501 gctctgctct gcccttctgt ctccccgctg ggcaccagtt ctgtccagtc attgcccttt
     1561 ggaccagtct tccatcacta ccctgcctgt gggcggagcc ccgagagtgg ggattgccag
     1621 tggcttctca cacggcctct caggattgca ggaggggcag gcagagctcc aggcttccgt
     1681 gaacttgctg ggtgactatg ggtgcttgtc ttctctgggc ttcaccttac tcctaggtgg
     1741 ggagctttcc aagatgggtg ggaaggtttg ctccaacaga ggtggagccc tctcctaagg
     1801 aggccaggcc ctggggccct gactgggcat ctccagagag ctcctgaccc aggcagccag
     1861 acgtgtgagg gagaggtatc tggggaggca ggagtgagtt ctcactttgg gcgaaggcat
     1921 ggggacgagc caccctctcc gtgagagaaa cagggatgac gtgatggagc ttggaggcta
     1981 catccaggct gacggagcga ggcctgtttc ccatgtcctt tgaggctaaa ggagtcttcc
     2041 cttgagttct gaagagtggg ggttaagagg gtgcagaaag ggcaggacgg acaaagagcc
     2101 gtgccaccca aagcccacat gcaggtggat gcctgtgtgc agagagggat gtgaatgggc
     2161 cgacggggca gaggatctca gtgaaccttc agactaggaa ggctggttct tctccactca
     2221 aatccatggg cttgtggttc ctgcttactt ggaagggatg tcccagtctc atccccaccc
     2281 acacactcct gcccgccccc aggctcactt tctttggcca tttgacaggg aggggccagc
     2341 agtgagctgc aggcttagag gggtgaccag ggtcctgctc cactcatcct gccggccaga
     2401 ctgggtttgg tggctgcctg ggaagccccc caatggtggc atttccctta atgggcatct
     2461 gtcaggggcc acttcactag gccagccccc ttggggatgg gggtcaggga ggaatcatcc
     2521 aaagatagaa cagatgtggg ccctgccaga gggtacttgg cctcagcggc agtgggggtc
     2581 catccaggga aataacgcta gtctaaggca gtggccctgc ggtgattgac gacggatccg
     2641 ggtattcccc tgtataagta aacttgacag acaggcgtga atctaccaga ttaagatagg
     2701 gagcaagttc actttggatg aacttctatt cctgaggcag aggccaagtc atgagtctgg
     2761 gggctgccct ctaccccatc tggggagggg atgtgaccgc tcagcatctt gaaagtaaca
     2821 gacttctgac tcctggaagg aagagggcaa ccccaacgga ataaaaagaa gggaggagcc
     2881 tcagaagttc aggcctggtg ttcccagctt acaacctccg gctcagcaaa tggtcttggc
     2941 tggggccttg tcactcttgt cacaagggat aggaggaggc tgtcctttgg gggctctttt
     3001 cactggaacc acagtactga ttttatactg aatgtgagtg ggaacccagc ctcattttac
     3061 ggccattact accagaaccc atctcctccc tgggcaaagc cctggtccct cgtgggaggc
     3121 cccaggctca cattaccctg gcaaggagag gggtttggtg acatggggcc caggattaca
     3181 gccctggagt ctcacacatt taagaagacc tgataactgg tcttaacctc tgtaagggat
     3241 ggattttgtt gcacaagtta tctgtgtgga caaggtgtca ggaatgttcc caaagtactt
     3301 taacattcct tcacacagca tttatggatc acacagtaca aaggtttttg acccacacgt
     3361 gcagacgcct ccgtgtctca attatagacc acagttttct ctgttccaac caatgccacc
     3421 tgggtagccc agctctcctt actgtgtgga cttgaaataa ataaagtgca tttcttcgga
     3481 ttgta
//
LOCUS       XM_032604095            3392 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 5 (SH2D5),
            transcript variant X3, mRNA.
ACCESSION   XM_032604095
VERSION     XM_032604095.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3392
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3392
                     /gene="SH2D5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739612"
     CDS             152..1345
                     /gene="SH2D5"
                     /codon_start=1
                     /product="SH2 domain-containing protein 5 isoform X3"
                     /protein_id="XP_032459986.1"
                     /db_xref="GeneID:116739612"
                     /translation="MQKAGAGGRRASDCGPAPHRPRCITKLAQQYVGSFPVDDLDTQE
                     SAWLVQQQLWALKDCPRRRAVILKFSLRGLKIYSGEGEVLLMAHALRRILYSTWCPAD
                     CQFAFMARNPRSPASKLFCHLFVGSQPGEVQILHLLLCRSFQLAHLWQHPEERARPEP
                     CPGPVGDVPLKPLSGPGGTPGLKEPPESESRGGARHARLGNPYCSPTLVRKKAIRSKV
                     IRSGAYRACTYETQLQLSAREAFPDAWEAWPRGPGGPSCLVESEGSLTENIWAFTGIS
                     RPSALALLRRDVLGAFLLWPEPGTSGQWCLSVRTQCGVVPHQVFRNHLGRYCVEHLPA
                     EFPSLEALVEHHAGTERSLFCSLDMGRLNPGYEEQDCGPEGRLPRTLRPLAHAKSEAE
                     LQGLG"
     misc_feature    218..604
                     /gene="SH2D5"
                     /note="Tensin-related Phosphotyrosine-binding (PTB)
                     domain; Region: PTB_tensin-related; cd13157"
                     /db_xref="CDD:269979"
     misc_feature    order(236..238,458..460,524..526)
                     /gene="SH2D5"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:269979"
     misc_feature    order(428..445,479..481,557..559,569..571)
                     /gene="SH2D5"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:269979"
     misc_feature    959..1189
                     /gene="SH2D5"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cd00173"
                     /db_xref="CDD:198173"
     misc_feature    order(980..982,1034..1036,1100..1102,1103..1105)
                     /gene="SH2D5"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 gaggcggcag gggcggggcg ggctcccggg tgggcggtgg agacgctcgg ggctgcgcgg
       61 gggtcgcagc gccgagctgc aggacgggac ttgagacgcg gctgccgcgc cttctctcct
      121 gcggaccctg aagccgggca ccctgggggc catgcagaag gccggggcgg ggggccggag
      181 agcctccgac tgcggccctg cccctcaccg gcccaggtgc atcaccaagt tggcccagca
      241 gtacgtgggc tccttccccg tggacgacct ggacacccag gagagcgcgt ggctggtgca
      301 gcaacagctg tgggcactga aggactgtcc ccgccgccgg gctgtcatcc tgaaattcag
      361 ccttcggggc ctcaagatct acagcgggga gggtgaggtg ctcctgatgg ctcacgccct
      421 gaggcgcata ctctactcta cctggtgccc agccgactgc cagtttgcct tcatggcccg
      481 aaatccccgg agcccggcca gcaagctctt ctgccacctc tttgtgggca gccagcctgg
      541 agaggtccag atcctgcacc tgctgctctg ccgctccttc cagctcgctc acctctggca
      601 gcaccctgag gaacgggcac ggcctgagcc ctgcccggga cccgtagggg acgtgcccct
      661 gaagcccctg tcgggccctg ggggcacccc tggcctaaag gagccgccgg agtcggaaag
      721 ccgcgggggc gcccgccacg cccgcctggg gaacccgtac tgctcgccca cgctggtgcg
      781 caagaaggcc atccgcagca aggtgatccg ctccggggcc taccgcgcct gcacctacga
      841 gacgcagctg cagctgtcgg ctcgggaggc ctttcctgac gcgtgggagg cctggccccg
      901 gggtcctggg ggcccctcat gcctggtgga gagcgagggc agcctgacgg agaacatctg
      961 ggcttttact ggcatctcga ggcccagtgc cctcgccctg ctgcggagag acgtgcttgg
     1021 ggccttcctg ctgtggcctg agccaggcac cagtggccag tggtgcctgt cggtgaggac
     1081 acagtgcggc gtggtgcccc accaggtctt ccggaaccac ctaggccgct actgcgtgga
     1141 gcacctgccg gctgagttcc ccagcctgga ggccctggtg gagcatcacg ctgggacgga
     1201 gcgcagcctc ttctgctccc tcgacatggg ccgcctgaac cccggctacg aggagcagga
     1261 ctgcgggccc gagggcaggc ttccccggac gctccggccc ctcgcccatg ccaagtccga
     1321 ggcagaactg cagggcctgg gctaggacgc taggagcccc acgccaagag gccccgcctc
     1381 accctggctc ctgggcctca gcaggctgct ctgctctgcc cttctgtctc cccgctgggc
     1441 accagttctg tccagtcatt gccctttgga ccagtcttcc atcactaccc tgcctgtggg
     1501 cggagccccg agagtgggga ttgccagtgg cttctcacac ggcctctcag gattgcagga
     1561 ggggcaggca gagctccagg cttccgtgaa cttgctgggt gactatgggt gcttgtcttc
     1621 tctgggcttc accttactcc taggtgggga gctttccaag atgggtggga aggtttgctc
     1681 caacagaggt ggagccctct cctaaggagg ccaggccctg gggccctgac tgggcatctc
     1741 cagagagctc ctgacccagg cagccagacg tgtgagggag aggtatctgg ggaggcagga
     1801 gtgagttctc actttgggcg aaggcatggg gacgagccac cctctccgtg agagaaacag
     1861 ggatgacgtg atggagcttg gaggctacat ccaggctgac ggagcgaggc ctgtttccca
     1921 tgtcctttga ggctaaagga gtcttccctt gagttctgaa gagtgggggt taagagggtg
     1981 cagaaagggc aggacggaca aagagccgtg ccacccaaag cccacatgca ggtggatgcc
     2041 tgtgtgcaga gagggatgtg aatgggccga cggggcagag gatctcagtg aaccttcaga
     2101 ctaggaaggc tggttcttct ccactcaaat ccatgggctt gtggttcctg cttacttgga
     2161 agggatgtcc cagtctcatc cccacccaca cactcctgcc cgcccccagg ctcactttct
     2221 ttggccattt gacagggagg ggccagcagt gagctgcagg cttagagggg tgaccagggt
     2281 cctgctccac tcatcctgcc ggccagactg ggtttggtgg ctgcctggga agccccccaa
     2341 tggtggcatt tcccttaatg ggcatctgtc aggggccact tcactaggcc agcccccttg
     2401 gggatggggg tcagggagga atcatccaaa gatagaacag atgtgggccc tgccagaggg
     2461 tacttggcct cagcggcagt gggggtccat ccagggaaat aacgctagtc taaggcagtg
     2521 gccctgcggt gattgacgac ggatccgggt attcccctgt ataagtaaac ttgacagaca
     2581 ggcgtgaatc taccagatta agatagggag caagttcact ttggatgaac ttctattcct
     2641 gaggcagagg ccaagtcatg agtctggggg ctgccctcta ccccatctgg ggaggggatg
     2701 tgaccgctca gcatcttgaa agtaacagac ttctgactcc tggaaggaag agggcaaccc
     2761 caacggaata aaaagaaggg aggagcctca gaagttcagg cctggtgttc ccagcttaca
     2821 acctccggct cagcaaatgg tcttggctgg ggccttgtca ctcttgtcac aagggatagg
     2881 aggaggctgt cctttggggg ctcttttcac tggaaccaca gtactgattt tatactgaat
     2941 gtgagtggga acccagcctc attttacggc cattactacc agaacccatc tcctccctgg
     3001 gcaaagccct ggtccctcgt gggaggcccc aggctcacat taccctggca aggagagggg
     3061 tttggtgaca tggggcccag gattacagcc ctggagtctc acacatttaa gaagacctga
     3121 taactggtct taacctctgt aagggatgga ttttgttgca caagttatct gtgtggacaa
     3181 ggtgtcagga atgttcccaa agtactttaa cattccttca cacagcattt atggatcaca
     3241 cagtacaaag gtttttgacc cacacgtgca gacgcctccg tgtctcaatt atagaccaca
     3301 gttttctctg ttccaaccaa tgccacctgg gtagcccagc tctccttact gtgtggactt
     3361 gaaataaata aagtgcattt cttcggattg ta
//
LOCUS       XM_032604104            3908 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 5 (SH2D5),
            transcript variant X4, mRNA.
ACCESSION   XM_032604104
VERSION     XM_032604104.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3908
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3908
                     /gene="SH2D5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739612"
     CDS             827..1861
                     /gene="SH2D5"
                     /codon_start=1
                     /product="SH2 domain-containing protein 5 isoform X4"
                     /protein_id="XP_032459995.1"
                     /db_xref="GeneID:116739612"
                     /translation="MAHALRRILYSTWCPADCQFAFMARNPRSPASKLFCHLFVGSQP
                     GEVQILHLLLCRSFQLAHLWQHPEERARPEPCPGPVGDVPLKPLSGPGGTPGLVREPL
                     GRDQLSQHVNALVSFGRLPAGGPGGSGKEPPESESRGGARHARLGNPYCSPTLVRKKA
                     IRSKVIRSGAYRACTYETQLQLSAREAFPDAWEAWPRGPGGPSCLVESEGSLTENIWA
                     FTGISRPSALALLRRDVLGAFLLWPEPGTSGQWCLSVRTQCGVVPHQVFRNHLGRYCV
                     EHLPAEFPSLEALVEHHAGTERSLFCSLDMGRLNPGYEEQDCGPEGRLPRTLRPLAHA
                     KSEAELQGLG"
     misc_feature    <827..1024
                     /gene="SH2D5"
                     /note="Pleckstrin homology-like domain; Region: PH-like;
                     cl17171"
                     /db_xref="CDD:473070"
     misc_feature    1475..1705
                     /gene="SH2D5"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cd00173"
                     /db_xref="CDD:198173"
     misc_feature    order(1496..1498,1550..1552,1616..1618,1619..1621)
                     /gene="SH2D5"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 ggctccttcc ccgtggacga cctggacacc caggagagcg cgtggctggt gcagcaacag
       61 ctgtgggcac tgaaggactg tccccgccgc cgggctgtca tcctgaaatt cagccttcgg
      121 ggcctcaaga tctacagcgg ggagggtgag gtaggaaccc gtgtgggtgc gggtgaggac
      181 cggacaggtg tcctactccc tgggaatgca ctcgcctcca cccagccctg cactgcccct
      241 ccagcctccc cggctgccca gcctgctctg ggcctttgga cgtcctctct ccaaggccct
      301 cccgccctgg caagcatgga cgacagtttc tcctccctct cacctgccgg ccgccagccc
      361 accagaatct ccgggggcca cctcctggcc tgagcatcag gaccaaccag ccccatgagg
      421 tttctgtggg tccccgggct tggccagtgg gctgtggcta gcctctcatg actgtggaac
      481 aggaccaggc aggctggaga ccagttggga gcccctgctc ggtctgccat cctcctcttg
      541 gtgcaaacca gtgtttgatg aacactaaac cgtgtgccag actgtgagac ccacgactcc
      601 ggcaccactc agctaggact ggtgcaaatg tgtgcagagc tgtgcattgc ggggccctgg
      661 gttcagggac tgtgccaccc gcacgaggtc tcgctcagcc cccagcccca cttgtcacaa
      721 caaggactca gagagctgcc ctcaccggcc caagtcaccc ggagagtgag tggcagagcc
      781 aggatttgaa cccctgtcac ctgactccag agaccaggtg ctcctgatgg ctcacgccct
      841 gaggcgcata ctctactcta cctggtgccc agccgactgc cagtttgcct tcatggcccg
      901 aaatccccgg agcccggcca gcaagctctt ctgccacctc tttgtgggca gccagcctgg
      961 agaggtccag atcctgcacc tgctgctctg ccgctccttc cagctcgctc acctctggca
     1021 gcaccctgag gaacgggcac ggcctgagcc ctgcccggga cccgtagggg acgtgcccct
     1081 gaagcccctg tcgggccctg ggggcacccc tggcctagta cgggaacccc tcggccgtga
     1141 tcagctctca cagcacgtta acgcgctggt ctccttcggg cggctgccag caggggggcc
     1201 tgggggcagt gggaaggagc cgccggagtc ggaaagccgc gggggcgccc gccacgcccg
     1261 cctggggaac ccgtactgct cgcccacgct ggtgcgcaag aaggccatcc gcagcaaggt
     1321 gatccgctcc ggggcctacc gcgcctgcac ctacgagacg cagctgcagc tgtcggctcg
     1381 ggaggccttt cctgacgcgt gggaggcctg gccccggggt cctgggggcc cctcatgcct
     1441 ggtggagagc gagggcagcc tgacggagaa catctgggct tttactggca tctcgaggcc
     1501 cagtgccctc gccctgctgc ggagagacgt gcttggggcc ttcctgctgt ggcctgagcc
     1561 aggcaccagt ggccagtggt gcctgtcggt gaggacacag tgcggcgtgg tgccccacca
     1621 ggtcttccgg aaccacctag gccgctactg cgtggagcac ctgccggctg agttccccag
     1681 cctggaggcc ctggtggagc atcacgctgg gacggagcgc agcctcttct gctccctcga
     1741 catgggccgc ctgaaccccg gctacgagga gcaggactgc gggcccgagg gcaggcttcc
     1801 ccggacgctc cggcccctcg cccatgccaa gtccgaggca gaactgcagg gcctgggcta
     1861 ggacgctagg agccccacgc caagaggccc cgcctcaccc tggctcctgg gcctcagcag
     1921 gctgctctgc tctgcccttc tgtctccccg ctgggcacca gttctgtcca gtcattgccc
     1981 tttggaccag tcttccatca ctaccctgcc tgtgggcgga gccccgagag tggggattgc
     2041 cagtggcttc tcacacggcc tctcaggatt gcaggagggg caggcagagc tccaggcttc
     2101 cgtgaacttg ctgggtgact atgggtgctt gtcttctctg ggcttcacct tactcctagg
     2161 tggggagctt tccaagatgg gtgggaaggt ttgctccaac agaggtggag ccctctccta
     2221 aggaggccag gccctggggc cctgactggg catctccaga gagctcctga cccaggcagc
     2281 cagacgtgtg agggagaggt atctggggag gcaggagtga gttctcactt tgggcgaagg
     2341 catggggacg agccaccctc tccgtgagag aaacagggat gacgtgatgg agcttggagg
     2401 ctacatccag gctgacggag cgaggcctgt ttcccatgtc ctttgaggct aaaggagtct
     2461 tcccttgagt tctgaagagt gggggttaag agggtgcaga aagggcagga cggacaaaga
     2521 gccgtgccac ccaaagccca catgcaggtg gatgcctgtg tgcagagagg gatgtgaatg
     2581 ggccgacggg gcagaggatc tcagtgaacc ttcagactag gaaggctggt tcttctccac
     2641 tcaaatccat gggcttgtgg ttcctgctta cttggaaggg atgtcccagt ctcatcccca
     2701 cccacacact cctgcccgcc cccaggctca ctttctttgg ccatttgaca gggaggggcc
     2761 agcagtgagc tgcaggctta gaggggtgac cagggtcctg ctccactcat cctgccggcc
     2821 agactgggtt tggtggctgc ctgggaagcc ccccaatggt ggcatttccc ttaatgggca
     2881 tctgtcaggg gccacttcac taggccagcc cccttgggga tgggggtcag ggaggaatca
     2941 tccaaagata gaacagatgt gggccctgcc agagggtact tggcctcagc ggcagtgggg
     3001 gtccatccag ggaaataacg ctagtctaag gcagtggccc tgcggtgatt gacgacggat
     3061 ccgggtattc ccctgtataa gtaaacttga cagacaggcg tgaatctacc agattaagat
     3121 agggagcaag ttcactttgg atgaacttct attcctgagg cagaggccaa gtcatgagtc
     3181 tgggggctgc cctctacccc atctggggag gggatgtgac cgctcagcat cttgaaagta
     3241 acagacttct gactcctgga aggaagaggg caaccccaac ggaataaaaa gaagggagga
     3301 gcctcagaag ttcaggcctg gtgttcccag cttacaacct ccggctcagc aaatggtctt
     3361 ggctggggcc ttgtcactct tgtcacaagg gataggagga ggctgtcctt tgggggctct
     3421 tttcactgga accacagtac tgattttata ctgaatgtga gtgggaaccc agcctcattt
     3481 tacggccatt actaccagaa cccatctcct ccctgggcaa agccctggtc cctcgtggga
     3541 ggccccaggc tcacattacc ctggcaagga gaggggtttg gtgacatggg gcccaggatt
     3601 acagccctgg agtctcacac atttaagaag acctgataac tggtcttaac ctctgtaagg
     3661 gatggatttt gttgcacaag ttatctgtgt ggacaaggtg tcaggaatgt tcccaaagta
     3721 ctttaacatt ccttcacaca gcatttatgg atcacacagt acaaaggttt ttgacccaca
     3781 cgtgcagacg cctccgtgtc tcaattatag accacagttt tctctgttcc aaccaatgcc
     3841 acctgggtag cccagctctc cttactgtgt ggacttgaaa taaataaagt gcatttcttc
     3901 ggattgta
//
LOCUS       XM_032604111            3510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 5 (SH2D5),
            transcript variant X5, mRNA.
ACCESSION   XM_032604111
VERSION     XM_032604111.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3510
                     /gene="SH2D5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739612"
     CDS             429..1463
                     /gene="SH2D5"
                     /codon_start=1
                     /product="SH2 domain-containing protein 5 isoform X4"
                     /protein_id="XP_032460002.1"
                     /db_xref="GeneID:116739612"
                     /translation="MAHALRRILYSTWCPADCQFAFMARNPRSPASKLFCHLFVGSQP
                     GEVQILHLLLCRSFQLAHLWQHPEERARPEPCPGPVGDVPLKPLSGPGGTPGLVREPL
                     GRDQLSQHVNALVSFGRLPAGGPGGSGKEPPESESRGGARHARLGNPYCSPTLVRKKA
                     IRSKVIRSGAYRACTYETQLQLSAREAFPDAWEAWPRGPGGPSCLVESEGSLTENIWA
                     FTGISRPSALALLRRDVLGAFLLWPEPGTSGQWCLSVRTQCGVVPHQVFRNHLGRYCV
                     EHLPAEFPSLEALVEHHAGTERSLFCSLDMGRLNPGYEEQDCGPEGRLPRTLRPLAHA
                     KSEAELQGLG"
     misc_feature    <429..626
                     /gene="SH2D5"
                     /note="Pleckstrin homology-like domain; Region: PH-like;
                     cl17171"
                     /db_xref="CDD:473070"
     misc_feature    1077..1307
                     /gene="SH2D5"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cd00173"
                     /db_xref="CDD:198173"
     misc_feature    order(1098..1100,1152..1154,1218..1220,1221..1223)
                     /gene="SH2D5"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 ggctccttcc ccgtggacga cctggacacc caggagagcg cgtggctggt gcagcaacag
       61 ctgtgggcac tgaaggactg tccccgccgc cgggctgtca tcctgaaatt cagccttcgg
      121 ggcctcaaga tctacagcgg ggagggtgag gtaggaaccc gtgtgggtgc gggtgaggac
      181 cggacaggtg tcctactccc tgggaatgca ctcgcctcca cccagccctg cactgcccct
      241 ccagcctccc cggctgccca gcctgctctg ggcctttgga cgtcctctct ccaaggccct
      301 cccgccctgg caagcatgga cgacagtttc tcctccctct cacctgccgg ccgccagccc
      361 accagaatct ccgggggcca cctcctggcc tgagcatcag gaccaaccag ccccatgagg
      421 tgctcctgat ggctcacgcc ctgaggcgca tactctactc tacctggtgc ccagccgact
      481 gccagtttgc cttcatggcc cgaaatcccc ggagcccggc cagcaagctc ttctgccacc
      541 tctttgtggg cagccagcct ggagaggtcc agatcctgca cctgctgctc tgccgctcct
      601 tccagctcgc tcacctctgg cagcaccctg aggaacgggc acggcctgag ccctgcccgg
      661 gacccgtagg ggacgtgccc ctgaagcccc tgtcgggccc tgggggcacc cctggcctag
      721 tacgggaacc cctcggccgt gatcagctct cacagcacgt taacgcgctg gtctccttcg
      781 ggcggctgcc agcagggggg cctgggggca gtgggaagga gccgccggag tcggaaagcc
      841 gcgggggcgc ccgccacgcc cgcctgggga acccgtactg ctcgcccacg ctggtgcgca
      901 agaaggccat ccgcagcaag gtgatccgct ccggggccta ccgcgcctgc acctacgaga
      961 cgcagctgca gctgtcggct cgggaggcct ttcctgacgc gtgggaggcc tggccccggg
     1021 gtcctggggg cccctcatgc ctggtggaga gcgagggcag cctgacggag aacatctggg
     1081 cttttactgg catctcgagg cccagtgccc tcgccctgct gcggagagac gtgcttgggg
     1141 ccttcctgct gtggcctgag ccaggcacca gtggccagtg gtgcctgtcg gtgaggacac
     1201 agtgcggcgt ggtgccccac caggtcttcc ggaaccacct aggccgctac tgcgtggagc
     1261 acctgccggc tgagttcccc agcctggagg ccctggtgga gcatcacgct gggacggagc
     1321 gcagcctctt ctgctccctc gacatgggcc gcctgaaccc cggctacgag gagcaggact
     1381 gcgggcccga gggcaggctt ccccggacgc tccggcccct cgcccatgcc aagtccgagg
     1441 cagaactgca gggcctgggc taggacgcta ggagccccac gccaagaggc cccgcctcac
     1501 cctggctcct gggcctcagc aggctgctct gctctgccct tctgtctccc cgctgggcac
     1561 cagttctgtc cagtcattgc cctttggacc agtcttccat cactaccctg cctgtgggcg
     1621 gagccccgag agtggggatt gccagtggct tctcacacgg cctctcagga ttgcaggagg
     1681 ggcaggcaga gctccaggct tccgtgaact tgctgggtga ctatgggtgc ttgtcttctc
     1741 tgggcttcac cttactccta ggtggggagc tttccaagat gggtgggaag gtttgctcca
     1801 acagaggtgg agccctctcc taaggaggcc aggccctggg gccctgactg ggcatctcca
     1861 gagagctcct gacccaggca gccagacgtg tgagggagag gtatctgggg aggcaggagt
     1921 gagttctcac tttgggcgaa ggcatgggga cgagccaccc tctccgtgag agaaacaggg
     1981 atgacgtgat ggagcttgga ggctacatcc aggctgacgg agcgaggcct gtttcccatg
     2041 tcctttgagg ctaaaggagt cttcccttga gttctgaaga gtgggggtta agagggtgca
     2101 gaaagggcag gacggacaaa gagccgtgcc acccaaagcc cacatgcagg tggatgcctg
     2161 tgtgcagaga gggatgtgaa tgggccgacg gggcagagga tctcagtgaa ccttcagact
     2221 aggaaggctg gttcttctcc actcaaatcc atgggcttgt ggttcctgct tacttggaag
     2281 ggatgtccca gtctcatccc cacccacaca ctcctgcccg cccccaggct cactttcttt
     2341 ggccatttga cagggagggg ccagcagtga gctgcaggct tagaggggtg accagggtcc
     2401 tgctccactc atcctgccgg ccagactggg tttggtggct gcctgggaag ccccccaatg
     2461 gtggcatttc ccttaatggg catctgtcag gggccacttc actaggccag cccccttggg
     2521 gatgggggtc agggaggaat catccaaaga tagaacagat gtgggccctg ccagagggta
     2581 cttggcctca gcggcagtgg gggtccatcc agggaaataa cgctagtcta aggcagtggc
     2641 cctgcggtga ttgacgacgg atccgggtat tcccctgtat aagtaaactt gacagacagg
     2701 cgtgaatcta ccagattaag atagggagca agttcacttt ggatgaactt ctattcctga
     2761 ggcagaggcc aagtcatgag tctgggggct gccctctacc ccatctgggg aggggatgtg
     2821 accgctcagc atcttgaaag taacagactt ctgactcctg gaaggaagag ggcaacccca
     2881 acggaataaa aagaagggag gagcctcaga agttcaggcc tggtgttccc agcttacaac
     2941 ctccggctca gcaaatggtc ttggctgggg ccttgtcact cttgtcacaa gggataggag
     3001 gaggctgtcc tttgggggct cttttcactg gaaccacagt actgatttta tactgaatgt
     3061 gagtgggaac ccagcctcat tttacggcca ttactaccag aacccatctc ctccctgggc
     3121 aaagccctgg tccctcgtgg gaggccccag gctcacatta ccctggcaag gagaggggtt
     3181 tggtgacatg gggcccagga ttacagccct ggagtctcac acatttaaga agacctgata
     3241 actggtctta acctctgtaa gggatggatt ttgttgcaca agttatctgt gtggacaagg
     3301 tgtcaggaat gttcccaaag tactttaaca ttccttcaca cagcatttat ggatcacaca
     3361 gtacaaaggt ttttgaccca cacgtgcaga cgcctccgtg tctcaattat agaccacagt
     3421 tttctctgtt ccaaccaatg ccacctgggt agcccagctc tccttactgt gtggacttga
     3481 aataaataaa gtgcatttct tcggattgta
//
LOCUS       XM_032604146            2029 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA dehydrogenase medium chain
            (ACADM), transcript variant X1, mRNA.
ACCESSION   XM_032604146
VERSION     XM_032604146.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2029
                     /gene="ACADM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739638"
     CDS             113..1378
                     /gene="ACADM"
                     /codon_start=1
                     /product="medium-chain specific acyl-CoA dehydrogenase,
                     mitochondrial isoform X1"
                     /protein_id="XP_032460037.1"
                     /db_xref="GeneID:116739638"
                     /translation="MAALFRRSCGVLRSLSRFDWRSQHTKAVQHREPGSGFSFAFTEQ
                     QKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIKRAWELGLLNTHIPESCGGLGLGT
                     FDSCLITEEMAYGCTGVQTAIEGNSLGQMPVIIAGNDQQQKKYLGRLTEEPMMCAYCV
                     TEPGAGSDVAAIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDLDPKAPASKA
                     FTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVRIPKENVLIGEGAGFKIAMGA
                     FDKTRPLVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQGISFLLADMAMKVELAR
                     LSYQRAAWEVDSGRRNTYFASIAKAYAGDIANQVATDAVQIFGGNGYNTEYPVEKLMR
                     DAKIYQIYEGTAQIQRIIIAREHIGRYKN"
     misc_feature    233..1366
                     /gene="ACADM"
                     /note="Medium chain acyl-CoA dehydrogenase; Region: MCAD;
                     cd01157"
                     /db_xref="CDD:173846"
     misc_feature    order(233..241,419..421,602..604,683..685,824..835,
                     1001..1003,1010..1012,1028..1030,1037..1039,1052..1054,
                     1058..1066,1070..1075,1082..1087,1091..1093,1103..1105,
                     1115..1120,1124..1129,1136..1138,1166..1171,1220..1222,
                     1232..1234,1253..1261,1286..1288,1295..1297,1304..1309,
                     1334..1339,1346..1348,1355..1357)
                     /gene="ACADM"
                     /note="homotetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:173846"
     misc_feature    order(482..484,494..496,584..586,590..595,608..613,
                     683..685,689..691,920..922,941..946,953..955,1157..1159,
                     1163..1165,1298..1300,1307..1315,1319..1321,1325..1327)
                     /gene="ACADM"
                     /note="active site"
                     /db_xref="CDD:173846"
     misc_feature    1313..1315
                     /gene="ACADM"
                     /note="catalytic base [active]"
                     /db_xref="CDD:173846"
ORIGIN      
        1 tgccagacat gggcgggtcc gggcggttcc agacgggtcc agcgtcctgc gtgtcagcgg
       61 tcttggcaca agctggtaga ttagagactg agtagccgga cggagagtca acatggcagc
      121 gctgtttagg cgaagctgcg gggtactgag aagtctttct cgctttgact ggagatcaca
      181 acatacgaaa gctgtccaac accgtgaacc tggatcagga tttagttttg cgttcactga
      241 acagcagaaa gaatttcaag ctactgctcg taaatttgcc agggaggaaa taatcccagt
      301 tgctgcagaa tacgataaga ctggcgagta ccctgtccca ctaattaaaa gagcctggga
      361 acttggttta ttgaatacac acattccaga aagttgtgga ggtcttggac ttggaacttt
      421 tgatagctgt ctaattactg aagaaatggc ttatggatgt acaggggttc agactgctat
      481 tgaaggaaat tctctggggc aaatgcctgt tattattgct ggaaatgatc aacaacaaaa
      541 gaaatatttg gggagactga ctgaggagcc aatgatgtgt gcctactgtg taacagaacc
      601 tggagcaggc tctgatgtag ctgctataaa gaccaaagca gaaaaaaaag gagatgagta
      661 tattattaat ggtcagaaga tgtggataac caatggagga aaagctaatt ggtatttttt
      721 attggctcgt tctgatctgg atcctaaggc tcctgctagt aaagccttta ctggatttat
      781 tgtggaagca gacaccccag gagtacagat tggaagaaag gaattaaata tgggccagcg
      841 atgttcagat acaagaggaa ttgtctttga agatgtgaga atacctaagg aaaatgtttt
      901 aattggtgag ggagctggtt tcaaaattgc aatgggagct tttgataaaa ccagacctct
      961 agtagcagct ggtgctgtgg gactagcaca aagagctttg gatgaagcta ccaagtatgc
     1021 cctggagagg aagacttttg gaaagctgct tgtagagcac caaggaatat catttttgct
     1081 ggctgacatg gcaatgaagg ttgaactagc tagattgagt taccagagag cagcttggga
     1141 ggttgattct ggtcgccgaa atacctattt tgcctctatt gcaaaggcat atgctggaga
     1201 tattgcaaat caggtagcta ctgatgctgt tcagattttc ggaggcaacg gatataatac
     1261 agaatatcct gtagaaaaac taatgaggga tgccaagatc tatcagattt atgaaggtac
     1321 agcacaaatt caaaggatta ttatagcccg tgaacacatt ggcaggtata aaaattaacc
     1381 agatcaccat gttagtaatt gttgagtatt tagaacatga tctactactt aaactccagg
     1441 aaagagaaag agcaggcttt aaggtttttt ccagtaaaaa ttttaaaata agtactctta
     1501 tactaaacct atgcaactga tgctaatagt agttttctat ttttgtttag ctttatgact
     1561 tgccttttct ataatagatt tggttttatt aaaattatgt gttgtccttt agttccattg
     1621 tacctgaatc acattaacct agaaagatac atttggcttg ttgttttgac ctcttataat
     1681 taaagtaaca gaaatttctt ggaatttcag tgtttttcca atgacaggaa ggtttataaa
     1741 agtattcaga atgttccaaa atttacattg agaaaatatt ctgggattta aataacttgc
     1801 cagtgacttt gtagacttag tggtatttgt gttagaggag ttaattttac tgcaatttgg
     1861 aaagcatttg ttttccattt tgtacagtaa taaccaaaaa tttgatgttc atattctccc
     1921 tttatacaat gaccaaaagt tacttgaaaa tcttgtttaa ttctgagccc acatttcact
     1981 tgccttattt aaaataaatc aataaacttt cccttaaatt atttttata
//
LOCUS       XM_032604155            1909 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA dehydrogenase medium chain
            (ACADM), transcript variant X2, mRNA.
ACCESSION   XM_032604155
VERSION     XM_032604155.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1909
                     /gene="ACADM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 67% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116739638"
     CDS             113..1375
                     /gene="ACADM"
                     /codon_start=1
                     /product="medium-chain specific acyl-CoA dehydrogenase,
                     mitochondrial isoform X2"
                     /protein_id="XP_032460046.1"
                     /db_xref="GeneID:116739638"
                     /translation="MAALFRRSCGVLRSLSRFDWRSQHTKAVQHREPGSGFSFAFTEQ
                     QKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIKRAWELGLLNTHIPESCGGLGLGT
                     FDSCLITEEMAYGCTGVQTAIEGNSLGQMPVIIAGNDQQQKKYLGRLTEEPMMCAYCV
                     TEPGAGSDVAAIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDLDPKAPASKA
                     FTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVRIPKENVLIGEGAGFKIAMGA
                     FDKTRPLVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQGISFLLADMAMKVELAR
                     LSYQRAAWEVDSGRRNTYFASIAKAYAGDIANQVATDAVQIFGGNGYNTEYPVEKLMR
                     DAKIYQIYEGTAQIQRIIIAREHIGRNK"
     misc_feature    233..1366
                     /gene="ACADM"
                     /note="Medium chain acyl-CoA dehydrogenase; Region: MCAD;
                     cd01157"
                     /db_xref="CDD:173846"
     misc_feature    order(233..241,419..421,602..604,683..685,824..835,
                     1001..1003,1010..1012,1028..1030,1037..1039,1052..1054,
                     1058..1066,1070..1075,1082..1087,1091..1093,1103..1105,
                     1115..1120,1124..1129,1136..1138,1166..1171,1220..1222,
                     1232..1234,1253..1261,1286..1288,1295..1297,1304..1309,
                     1334..1339,1346..1348,1355..1357)
                     /gene="ACADM"
                     /note="homotetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:173846"
     misc_feature    order(482..484,494..496,584..586,590..595,608..613,
                     683..685,689..691,920..922,941..946,953..955,1157..1159,
                     1163..1165,1298..1300,1307..1315,1319..1321,1325..1327)
                     /gene="ACADM"
                     /note="active site"
                     /db_xref="CDD:173846"
     misc_feature    1313..1315
                     /gene="ACADM"
                     /note="catalytic base [active]"
                     /db_xref="CDD:173846"
ORIGIN      
        1 tgccagacat gggcgggtcc gggcggttcc agacgggtcc agcgtcctgc gtgtcagcgg
       61 tcttggcaca agctggtaga ttagagactg agtagccgga cggagagtca acatggcagc
      121 gctgtttagg cgaagctgcg gggtactgag aagtctttct cgctttgact ggagatcaca
      181 acatacgaaa gctgtccaac accgtgaacc tggatcagga tttagttttg cgttcactga
      241 acagcagaaa gaatttcaag ctactgctcg taaatttgcc agggaggaaa taatcccagt
      301 tgctgcagaa tacgataaga ctggcgagta ccctgtccca ctaattaaaa gagcctggga
      361 acttggttta ttgaatacac acattccaga aagttgtgga ggtcttggac ttggaacttt
      421 tgatagctgt ctaattactg aagaaatggc ttatggatgt acaggggttc agactgctat
      481 tgaaggaaat tctctggggc aaatgcctgt tattattgct ggaaatgatc aacaacaaaa
      541 gaaatatttg gggagactga ctgaggagcc aatgatgtgt gcctactgtg taacagaacc
      601 tggagcaggc tctgatgtag ctgctataaa gaccaaagca gaaaaaaaag gagatgagta
      661 tattattaat ggtcagaaga tgtggataac caatggagga aaagctaatt ggtatttttt
      721 attggctcgt tctgatctgg atcctaaggc tcctgctagt aaagccttta ctggatttat
      781 tgtggaagca gacaccccag gagtacagat tggaagaaag gaattaaata tgggccagcg
      841 atgttcagat acaagaggaa ttgtctttga agatgtgaga atacctaagg aaaatgtttt
      901 aattggtgag ggagctggtt tcaaaattgc aatgggagct tttgataaaa ccagacctct
      961 agtagcagct ggtgctgtgg gactagcaca aagagctttg gatgaagcta ccaagtatgc
     1021 cctggagagg aagacttttg gaaagctgct tgtagagcac caaggaatat catttttgct
     1081 ggctgacatg gcaatgaagg ttgaactagc tagattgagt taccagagag cagcttggga
     1141 ggttgattct ggtcgccgaa atacctattt tgcctctatt gcaaaggcat atgctggaga
     1201 tattgcaaat caggtagcta ctgatgctgt tcagattttc ggaggcaacg gatataatac
     1261 agaatatcct gtagaaaaac taatgaggga tgccaagatc tatcagattt atgaaggtac
     1321 agcacaaatt caaaggatta ttatagcccg tgaacacatt ggcagaaata aatgactcat
     1381 agtggagaca tggaagcaac ctaaatgtct attgacagat gaatggatca agaaaatgca
     1441 tatgtgtgcg tgtgtacaca cacacacaca cacactggaa tattactcag ccataaaaaa
     1501 gaatgaaata atgctatttg cagcaacatg gatggaccta gagattaccg tattaagtga
     1561 agtgagtcaa agacaaatgt catatgatat cacttatatg tggaatctaa aaggatgata
     1621 caaatgaact tatttacaaa acagaattag acatagaaaa caaacttatg gttaccaaag
     1681 gttatagcag ggggaggggg tggagataaa ttaggagttc agcattaaca aatacacact
     1741 actatatatg aaataggtaa acaaaaagga cctactttat agcataggga actatactca
     1801 atatcttgta atcacctata attgaaaata atctgaaaaa taatatatat ataaaactga
     1861 aacacttttc tgtaaatttg aaacattgta aataagatat acttcattt
//
LOCUS       XM_032604164            2633 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA dehydrogenase medium chain
            (ACADM), transcript variant X3, mRNA.
ACCESSION   XM_032604164
VERSION     XM_032604164.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2633
                     /gene="ACADM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739638"
     CDS             113..1348
                     /gene="ACADM"
                     /codon_start=1
                     /product="medium-chain specific acyl-CoA dehydrogenase,
                     mitochondrial isoform X3"
                     /protein_id="XP_032460055.1"
                     /db_xref="GeneID:116739638"
                     /translation="MAALFRRSCGVLRSLSRFDWRSQHTKAVQHREPGSGFSFAFTEQ
                     QKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIKRAWELGLLNTHIPESCGGLGLGT
                     FDSCLITEEMAYGCTGVQTAIEGNSLGQMPVIIAGNDQQQKKYLGRLTEEPMMCAYCV
                     TEPGAGSDVAAIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDLDPKAPASKA
                     FTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVRIPKENVLIGEGAGFKIAMGA
                     FDKTRPLVAAGAVGLAQRALDEATKYALERKTFGKLLVEVCGPLTVVASPVAEHRLRT
                     RRLSSHGPRAQPLRGMWDPPRPGHEPVSPASAGGLSTTAPPGKPLRAVFKSSISLCLS
                     PKRDSTLAHLCCQNYMYTD"
     misc_feature    233..>1057
                     /gene="ACADM"
                     /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
                     /db_xref="CDD:447864"
ORIGIN      
        1 tgccagacat gggcgggtcc gggcggttcc agacgggtcc agcgtcctgc gtgtcagcgg
       61 tcttggcaca agctggtaga ttagagactg agtagccgga cggagagtca acatggcagc
      121 gctgtttagg cgaagctgcg gggtactgag aagtctttct cgctttgact ggagatcaca
      181 acatacgaaa gctgtccaac accgtgaacc tggatcagga tttagttttg cgttcactga
      241 acagcagaaa gaatttcaag ctactgctcg taaatttgcc agggaggaaa taatcccagt
      301 tgctgcagaa tacgataaga ctggcgagta ccctgtccca ctaattaaaa gagcctggga
      361 acttggttta ttgaatacac acattccaga aagttgtgga ggtcttggac ttggaacttt
      421 tgatagctgt ctaattactg aagaaatggc ttatggatgt acaggggttc agactgctat
      481 tgaaggaaat tctctggggc aaatgcctgt tattattgct ggaaatgatc aacaacaaaa
      541 gaaatatttg gggagactga ctgaggagcc aatgatgtgt gcctactgtg taacagaacc
      601 tggagcaggc tctgatgtag ctgctataaa gaccaaagca gaaaaaaaag gagatgagta
      661 tattattaat ggtcagaaga tgtggataac caatggagga aaagctaatt ggtatttttt
      721 attggctcgt tctgatctgg atcctaaggc tcctgctagt aaagccttta ctggatttat
      781 tgtggaagca gacaccccag gagtacagat tggaagaaag gaattaaata tgggccagcg
      841 atgttcagat acaagaggaa ttgtctttga agatgtgaga atacctaagg aaaatgtttt
      901 aattggtgag ggagctggtt tcaaaattgc aatgggagct tttgataaaa ccagacctct
      961 agtagcagct ggtgctgtgg gactagcaca aagagctttg gatgaagcta ccaagtatgc
     1021 cctggagagg aagacttttg gaaagctgct tgtagaggta tgcgggcctc tcactgtggt
     1081 ggcctctccc gttgcggagc acaggctccg gacgcgcagg ctcagcagcc atggcccacg
     1141 ggcccagccg ctccgcggca tgtgggatcc tcccagaccg gggcacgaac ccgtgtcccc
     1201 tgcatcggca ggcggactct caaccactgc gccaccaggg aagcccctaa gagctgtttt
     1261 taaatcaagt atttctttgt gtttgtcacc aaagagagac tctacattag ctcatttatg
     1321 ttgccagaac tatatgtata cagattagtg gaatgtatat ttattactaa atattagttt
     1381 agtttaattg taaacagata acataatttc caggtcctcc ccaccaagta tctgatgata
     1441 actcttctgg ctattttcaa ctcaatatgg aatcttttat gttccacttc ttacagactc
     1501 tgaagttgat attttttcct catggctctt actgttaagt gtagaaaaat ctttgttttt
     1561 gcttactact tttctaggct aaacaaaggt aacactaaag ggctgattta tatatagctt
     1621 tgttctgtta tttccaaaaa gaaagaatag attttgtttt gttttgtctt aagagacatt
     1681 atagagtgta gtactctaat cacagctctc ctattcacta ccatgtttat tattgttgtt
     1741 attatcactt ctctctttaa gagaacacta tgtcactact tatcctcaca gtgcttaact
     1801 tgatgtggct aaagaaagct gccaaaaaca gagaatggta ctttttttaa ccaatgagta
     1861 gaactaggaa cattgataac aaattacggg atggtagaat ctcttaatgg caataactgc
     1921 ctactccttt gtctagttaa aaccctccat ccaggtgaag ttggagtggt ttgggatgat
     1981 atgaaaaaaa tctgttgaga ataattccca tttgtattga ttattattgc tagttagcag
     2041 taacttttct tgaggggaaa atggatgagg gaaaatgtta ttggggactt aagactgaaa
     2101 taagatatac ttagaaagaa atatacttat atctccctgt tacgtaacca ttttatgctc
     2161 aaaattcttt catatcttct catcatactc aaattaaaat ccagagtcct taaaatggtc
     2221 aactgtcatc cacagtgacc ttttgttgtt gtttttaact ttactcttcc ccctagatat
     2281 ccacttgctc attcatttca ctaaagaatg tacccttgat taccctgtgt aaaaaaacac
     2341 ctccaacatt ctatatagta ttcccacttt ttttcttcgt cttagcactg cccaacatta
     2401 taccatgtat gtgtttgttt attgtctttc tttactgcct cactagaatg taatatccat
     2461 aaaagtagta aatttctgtg ttggaaacct ttagatttct agcatttatg gtatgttttg
     2521 cagtgtgaac atctcaacaa atagtagtaa ttgaactact actatattaa aatattaata
     2581 aatagctgct ttctttgttc taggcactat cctaagtgct ctacatgtat taa
//
LOCUS       XM_032604174            1600 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA dehydrogenase medium chain
            (ACADM), transcript variant X4, mRNA.
ACCESSION   XM_032604174
VERSION     XM_032604174.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1600
                     /gene="ACADM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739638"
     CDS             74..949
                     /gene="ACADM"
                     /codon_start=1
                     /product="medium-chain specific acyl-CoA dehydrogenase,
                     mitochondrial isoform X4"
                     /protein_id="XP_032460065.1"
                     /db_xref="GeneID:116739638"
                     /translation="MPVIIAGNDQQQKKYLGRLTEEPMMCAYCVTEPGAGSDVAAIKT
                     KAEKKGDEYIINGQKMWITNGGKANWYFLLARSDLDPKAPASKAFTGFIVEADTPGVQ
                     IGRKELNMGQRCSDTRGIVFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPLVAAGAVG
                     LAQRALDEATKYALERKTFGKLLVEHQGISFLLADMAMKVELARLSYQRAAWEVDSGR
                     RNTYFASIAKAYAGDIANQVATDAVQIFGGNGYNTEYPVEKLMRDAKIYQIYEGTAQI
                     QRIIIAREHIGRYKN"
     misc_feature    <74..937
                     /gene="ACADM"
                     /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
                     /db_xref="CDD:447864"
     misc_feature    order(155..157,161..163,254..256,260..262,878..886,
                     890..892,896..898)
                     /gene="ACADM"
                     /note="active site"
                     /db_xref="CDD:173838"
ORIGIN      
        1 taccctgtcc cactaattaa aagagcctgg gaacttggtt tattgaatac acacattcca
       61 gaaagttgtg caaatgcctg ttattattgc tggaaatgat caacaacaaa agaaatattt
      121 ggggagactg actgaggagc caatgatgtg tgcctactgt gtaacagaac ctggagcagg
      181 ctctgatgta gctgctataa agaccaaagc agaaaaaaaa ggagatgagt atattattaa
      241 tggtcagaag atgtggataa ccaatggagg aaaagctaat tggtattttt tattggctcg
      301 ttctgatctg gatcctaagg ctcctgctag taaagccttt actggattta ttgtggaagc
      361 agacacccca ggagtacaga ttggaagaaa ggaattaaat atgggccagc gatgttcaga
      421 tacaagagga attgtctttg aagatgtgag aatacctaag gaaaatgttt taattggtga
      481 gggagctggt ttcaaaattg caatgggagc ttttgataaa accagacctc tagtagcagc
      541 tggtgctgtg ggactagcac aaagagcttt ggatgaagct accaagtatg ccctggagag
      601 gaagactttt ggaaagctgc ttgtagagca ccaaggaata tcatttttgc tggctgacat
      661 ggcaatgaag gttgaactag ctagattgag ttaccagaga gcagcttggg aggttgattc
      721 tggtcgccga aatacctatt ttgcctctat tgcaaaggca tatgctggag atattgcaaa
      781 tcaggtagct actgatgctg ttcagatttt cggaggcaac ggatataata cagaatatcc
      841 tgtagaaaaa ctaatgaggg atgccaagat ctatcagatt tatgaaggta cagcacaaat
      901 tcaaaggatt attatagccc gtgaacacat tggcaggtat aaaaattaac cagatcacca
      961 tgttagtaat tgttgagtat ttagaacatg atctactact taaactccag gaaagagaaa
     1021 gagcaggctt taaggttttt tccagtaaaa attttaaaat aagtactctt atactaaacc
     1081 tatgcaactg atgctaatag tagttttcta tttttgttta gctttatgac ttgccttttc
     1141 tataatagat ttggttttat taaaattatg tgttgtcctt tagttccatt gtacctgaat
     1201 cacattaacc tagaaagata catttggctt gttgttttga cctcttataa ttaaagtaac
     1261 agaaatttct tggaatttca gtgtttttcc aatgacagga aggtttataa aagtattcag
     1321 aatgttccaa aatttacatt gagaaaatat tctgggattt aaataacttg ccagtgactt
     1381 tgtagactta gtggtatttg tgttagagga gttaatttta ctgcaatttg gaaagcattt
     1441 gttttccatt ttgtacagta ataaccaaaa atttgatgtt catattctcc ctttatacaa
     1501 tgaccaaaag ttacttgaaa atcttgttta attctgagcc cacatttcac ttgccttatt
     1561 taaaataaat caataaactt tcccttaaat tatttttata
//
LOCUS       XM_032604188            1298 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adherens junctions associated protein 1
            (AJAP1), mRNA.
ACCESSION   XM_032604188
VERSION     XM_032604188.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1298
                     /gene="AJAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins"
                     /db_xref="GeneID:116739652"
     CDS             5..1204
                     /gene="AJAP1"
                     /codon_start=1
                     /product="adherens junction-associated protein 1"
                     /protein_id="XP_032460079.1"
                     /db_xref="GeneID:116739652"
                     /translation="MFIRWPGCSLGSHAWILIAMFQLALDLPACESLGPGPEFRLLPR
                     LPHRPPRLWSFKSGQPARVPAPVWSPRPPRLERGHSHGQMLSPRARRAHRPRDQVAAL
                     GPKGGLAKPPAAAKSSPSLGPSSSAGGSGAPTDQQALLRRGKRHLQGPAFNSFDFQGS
                     RPTTETEFIAWGPTGEEEAPESNTFPGVYGPTTVSIFQTRKTAVATATATATTATSVT
                     LQTQGLTEPLDPRSGKPVGVSTTEPSTSPSRDSGKVSKPPRVLGETSGLAVHQIITIT
                     VSLIMVIAALITTLVLKNCCAQSGNPRRNSHQRKANHQEESCQNLTDFTTARVPSSLD
                     IFTAYNETLQCSHECVRASVPVYTDETLHPAGEYKSTFNGNRPSSSDRHLIPVAFVSE
                     KWFEISC"
     misc_feature    509..1132
                     /gene="AJAP1"
                     /note="AJAP1/PANP C-terminus; Region: AJAP1_PANP_C;
                     pfam15298"
                     /db_xref="CDD:464624"
ORIGIN      
        1 ttccatgttc atccgctggc ccggctgctc tctaggaagc catgcttgga tccttatagc
       61 catgtttcag ctcgccctgg atctgcccgc gtgtgagtcc ctgggcccgg gccccgagtt
      121 ccggctgctg ccccggctgc cccaccggcc accccgcttg tggagtttta agagcggaca
      181 gcccgcccgg gtcccagcgc ccgtgtggag cccccggccg ccccgcttgg agcgtggtca
      241 cagtcacggg cagatgctga gtccccgggc ccgacgggcg cacagaccca gggaccaggt
      301 ggccgctctg gggcccaaag gggggctggc caagccccca gctgctgcca aatccagccc
      361 ttccctgggc ccctcatcct ctgcgggggg cagtggagct cccacggacc agcaggccct
      421 cctgcggagg gggaagaggc acctgcaggg gcccgccttc aacagctttg acttccaagg
      481 cagcaggccc accacggaga cggagttcat tgcctggggg cccacggggg aggaggaggc
      541 cccggaatcc aatacatttc caggcgttta tggccccacc acggtctcca tcttccaaac
      601 acggaagaca gctgtggcca ctgccaccgc caccgccacc acggccacct ccgtgacact
      661 gcagactcag gggctcaccg agcccctgga ccccaggagt gggaaaccgg ttggggtaag
      721 cacaacggag ccttccacca gccccagcag agacagtggc aaagtcagca agcccccgcg
      781 ggttctgggg gagacctcag gtttggcggt ccatcagatc atcaccatca ccgtctccct
      841 catcatggtc atagctgctc tgattacaac tcttgtctta aaaaactgct gcgcccagag
      901 cgggaaccct cgtaggaaca gccaccagcg gaaggcaaac catcaggagg agagctgcca
      961 gaacctgacg gacttcacga ccgcccgggt gcccagcagc ctggacatct tcacggccta
     1021 taacgaaacc ctccagtgtt cacacgagtg tgtccgggcg tctgtgcccg tgtacaccga
     1081 cgagacgctg cacccagccg gggagtacaa atccacgttt aacgggaacc gaccctcttc
     1141 ttctgatcgg catcttattc ctgtggcctt tgtgtctgag aaatggtttg aaatctcctg
     1201 ctgactggcc gaaggctttt ttacctcctg ggggcagggc agacgccatg tgtctgtttt
     1261 atggattccg ttggtgaacc tgtaaaaaaa aaaaaaaa
//
LOCUS       XM_032604210            1079 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lysophosphatidic acid receptor 3 (LPAR3),
            mRNA.
ACCESSION   XM_032604210
VERSION     XM_032604210.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1079
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1079
                     /gene="LPAR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 29% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739667"
     CDS             1..1068
                     /gene="LPAR3"
                     /codon_start=1
                     /product="lysophosphatidic acid receptor 3"
                     /protein_id="XP_032460101.1"
                     /db_xref="GeneID:116739667"
                     /translation="MNECYYDKQMDFFYNRSNTDTADEWTGTKLVIVLCVGTFFCLFI
                     FFSNSLVIAAVIKNRKFHFPFYYLLANLAAADFFAGIAYVYLMFNTGPVSKTLTVNRW
                     FLRQGLLDTSLTASLTNLLVIAVERHMSIMRMRVHSNLTKKRVTLLILFVWAIAIFMG
                     AVPTLGWNCLCDISACSSLAPIYSRSYLIFWSVSNLMAFFIMVVVYLRIYMYVKRKTN
                     VLSPHTSGSISHRRTPMKLMKTVMTVLGAFVVCWTPGLVVLLLDGLNCTWCNVQHVKR
                     WFLLLALLNSVMNPIIYSYKDEDMYSTMKRMLCCFSQEKNPERRPSHIPSVVLSQSDT
                     GGSQYMEDNSNRGQVCNKSSS"
     misc_feature    91..912
                     /gene="LPAR3"
                     /note="lysophosphatidic acid receptor subtype 3 (LPAR3 or
                     LPA3), also called endothelial differentiation gene 7
                     (Edg7), member of the class A family of
                     seven-transmembrane G protein-coupled receptors; Region:
                     7tmA_LPAR3_Edg7; cd15343"
                     /db_xref="CDD:320465"
     misc_feature    94..174
                     /gene="LPAR3"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320465"
     misc_feature    order(97..99,247..249,268..270,280..282,313..318,325..330,
                     337..339,562..564,571..573,754..756,763..765,772..777,
                     823..828,832..837)
                     /gene="LPAR3"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:320465"
     misc_feature    193..270
                     /gene="LPAR3"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320465"
     misc_feature    304..396
                     /gene="LPAR3"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320465"
     misc_feature    433..489
                     /gene="LPAR3"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320465"
     misc_feature    547..636
                     /gene="LPAR3"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320465"
     misc_feature    694..786
                     /gene="LPAR3"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320465"
     misc_feature    814..891
                     /gene="LPAR3"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320465"
ORIGIN      
        1 atgaatgagt gctactatga taagcagatg gacttttttt ataataggag caacactgac
       61 actgccgatg agtggacagg aacgaagctt gtaattgttt tgtgtgttgg aacattcttc
      121 tgcctgttta tctttttttc taattctctg gtcatcgcag cagtaatcaa aaacagaaag
      181 tttcatttcc ccttctacta cctgttggct aacctagccg ctgcagattt ctttgctgga
      241 attgcctatg tatacctgat gtttaacact ggcccagttt caaaaactct gactgtcaac
      301 cgctggtttc tccgccaggg gcttctggac actagcttaa cagcctccct gaccaatctg
      361 ttggttattg ccgtggagag gcacatgtca atcatgagga tgcgagtcca cagcaacctg
      421 accaaaaaga gagtgacgct gctcatcttg ttcgtctggg ccattgccat ctttatgggg
      481 gctgtcccca cattgggctg gaattgcctc tgtgacatct cggcctgctc ttccctggcc
      541 cccatttata gcaggagtta cctcattttc tggagtgtgt ccaacctcat ggccttcttc
      601 attatggtcg tggtgtacct gcggatctac atgtacgtaa agaggaaaac caacgtctta
      661 tctccgcaca caagtgggtc catcagccac cggaggacac ccatgaagct aatgaagacg
      721 gtgatgactg tcttaggggc ctttgtcgtg tgctggacac caggtctggt ggttctgctg
      781 ctcgatggcc tgaactgcac gtggtgcaac gtgcagcatg tgaaaaggtg gttcctgctg
      841 ctggcgctgc ttaactccgt catgaacccc atcatctact cctacaagga tgaggacatg
      901 tacagcacca tgaagaggat gctctgctgc ttctcgcagg agaagaaccc agagaggcgg
      961 ccctcccaca tcccctccgt ggtcctcagc cagagcgaca cggggggcag ccagtatatg
     1021 gaggataata gcaaccgagg ccaggtctgc aacaagagca gctcctaggc ttcagtgcc
//
LOCUS       XR_004345671            1268 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NEDD8-conjugating enzyme UBE2F-like
            (LOC116739671), misc_RNA.
ACCESSION   XR_004345671
VERSION     XR_004345671.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1268
                     /gene="LOC116739671"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins"
                     /pseudo
                     /db_xref="GeneID:116739671"
     misc_RNA        1..1268
                     /gene="LOC116739671"
                     /product="NEDD8-conjugating enzyme UBE2F-like"
                     /pseudo
                     /db_xref="GeneID:116739671"
ORIGIN      
        1 atgctgatgc tgacaagccc actgaagcgg gatgatggtt ggtctcaaag ggtcgctccc
       61 aggagtcagc cacagcctct gactccctca gcgggtttcg gcgagagaca gtctacttgt
      121 taaagagatt gcagaacttg aagctaattt accttgtaca tgtaaagtgc attttcctca
      181 accaaacaag cttcattgct ttcagctaac tgtaacccca gatgagggtt acgacgaggg
      241 tggaaaattt cagtttgata ctgaagttcc tgatatgtac aacgtggtgc ctcccacagt
      301 gaaatgcttg accaggatct ggcaccccag catcacagag acaggcgaag tatgtctgag
      361 tttactgaga gaacgtttga ttgacagcac cggctgcgct cccacgagga cactgaagga
      421 tattgttcgg ggattcaacg ctttgttaag tgatcttttg aattttgatg atccactgca
      481 tgttgaagct gcagaacata atttgccaga caaggaggac ttccagaata aagttaaaga
      541 gtacatgaaa cattatgcca gaggatagga cgagaagact gcagcgccgt ggactgtgcg
      601 ttataagttt gtctccaact gaaacaaaaa gggagcctct tcctcagtcc tcgcgctccc
      661 ctcggtccca ttgggtcctc aagtcctgtg actatgttgt cctgaggaag aacctcttca
      721 tgactgccca ttgtagatgg agagttctac ataaatacag caagagaatg tgtttggggt
      781 tctcaagtgt tgtcccctta ccttaacatg cttacttttt tgcaactgta ctctataggc
      841 tggtggtgag attctcgaga agttgtaatg aactcagaat tgaggctaga gcttgcttct
      901 ttcccttctc ccaaagtcag ttccctgcac aggtcatgct aataatgtgc tcagtgtagc
      961 tcacagattg gcaatcagaa acccactaca aactgtgatt ggatgcaaat tctcttagtt
     1021 ccttccacaa atgttagcct tgcctagatg tcatgaagct tcctaaaatg cataaccatt
     1081 cactgtagat cacttactga aatgcgtatt ttatttaatg taagtacatt ttggaacatt
     1141 tgtaatttgt acgatttagt gctttaatta tttttttcta ttctcaattt agtttgtatt
     1201 ttcattgtat agagcagaca gaaggatgtt gactcaagca actattgaag agaaatacaa
     1261 agaaaata
//
LOCUS       XM_032604231             372 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus HIG1 domain family member 1A,
            mitochondrial-like (LOC116739678), mRNA.
ACCESSION   XM_032604231
VERSION     XM_032604231.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..372
                     /gene="LOC116739678"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 76% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739678"
     CDS             1..282
                     /gene="LOC116739678"
                     /codon_start=1
                     /product="HIG1 domain family member 1A,
                     mitochondrial-like"
                     /protein_id="XP_032460122.1"
                     /db_xref="GeneID:116739678"
                     /translation="MSSDTDVSLSSYDEDQGSKLIQKAREAPFVPTGMAGFAAIFAYG
                     LYKLKSRGNTKMSVHLIHMRVAAQGFVVGAMTLGMGYSMYQEFWAEPKP"
     misc_feature    76..234
                     /gene="LOC116739678"
                     /note="Hypoxia induced protein conserved region; Region:
                     HIG_1_N; pfam04588"
                     /db_xref="CDD:461361"
ORIGIN      
        1 atgtcaagtg acacagatgt ttctctttct tcatacgatg aagatcaggg atctaaactt
       61 atccaaaaag ctagagaggc accatttgtc cccactggaa tggcaggttt tgcagcaatc
      121 tttgcatatg gattatataa attgaagagc aggggcaata ctaaaatgtc tgttcacctg
      181 atccacatgc gcgtggcagc ccaaggcttt gttgtgggag caatgactct tggtatgggc
      241 tattccatgt atcaagaatt ctgggcagaa cctaaacctt agaagaggag atgctgtctt
      301 ggtcttggtg gtgcttgctt tagttagaca tctcatattg aggttatatg tttatggtga
      361 aaataaattc tg
//
LOCUS       XM_032604246            7841 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ABL proto-oncogene 2, non-receptor
            tyrosine kinase (ABL2), transcript variant X1, mRNA.
ACCESSION   XM_032604246
VERSION     XM_032604246.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7841
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7841
                     /gene="ABL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739683"
     CDS             252..3776
                     /gene="ABL2"
                     /codon_start=1
                     /product="tyrosine-protein kinase ABL2 isoform X1"
                     /protein_id="XP_032460137.1"
                     /db_xref="GeneID:116739683"
                     /translation="MGQQVGRVGEAPGLQQSQPRGIRGSSAARPSSRRRDLAGRTAEA
                     GFNIFTQHDHFASCVEDGFEGDKTGGSSPEALHRPYGCDVEPQALNEAIRWSSKENLL
                     GATESDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNQNGEWSEVRSKNGQGWVPSN
                     YITPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVY
                     HYRINTTTDGKVYVTAESRFSTLAELVHHHSTVADGLVTTLHYPAPKCNKPTVYGVSP
                     IHDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAA
                     VMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQ
                     ISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIK
                     WTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYDLLEKGYRMEQPE
                     GCPPKVYELMRACWKWSPADRPSFAETHQAFETMFHDSSISEEVAEELGRAASSSSVV
                     PYLPRLPILPSKTRTLKKQGENKENIEGPQDATENSASSSAPGFIRSAQAPSGSPALP
                     RKQRDKSPSSLLEDAKETCFTRDRKGGFFSSFMKKRNAPTPPKRSSSFREMENQPHKK
                     YELTGNFSSVASLQHADGFSFTAAQQEANLVPPKCYGGSFAQRNLCNDDSGGGGGSSA
                     AGGGWSGITGFFTPRLIKKTLGLRAGKPTASDDTSKPFPRSNSTSSMSSGLPEQDRMA
                     MTLPRNCQRSKLQLERTVSTSSQPEENVDRANDMLPKKSEEGAAPTRERPKAKLLPRG
                     ATALPLRTPSGDPAITEKDSPGLGVAGVAAAPKSRERNGGARLGMAGVPEDGEQTGWA
                     APAKAAAVLPTTHNHKVPVLISPTLKHTPADVQLIGTDSQGNKFKLLSEHQVTSSGDK
                     DRPRRVKPKCAPPPPPGVRLLQHPAVCSDSTEEPMSETQEGGKKAAPGAVPISGKAGR
                     PVMPPPQVPLPTSSISPAKMANGTAGTKVALRKTRQVAEKISADKISKEALLECADLL
                     SSAITEPVPNSQLVDTGHQLLDYCSGYVDCIPQTRNKFAFREAVSKLELSLQELQVSS
                     AAAGVPGANPVLNNLLSCVQEISDVVQR"
     misc_feature    582..743
                     /gene="ABL2"
                     /note="Src homology 3 domain of the Protein Tyrosine
                     Kinase, Abelson kinase; Region: SH3_Abl; cd11850"
                     /db_xref="CDD:212784"
     misc_feature    order(597..599,603..605,612..620,624..626,669..671,
                     681..686,717..719,723..725,729..734)
                     /gene="ABL2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212784"
     misc_feature    order(609..620,675..677,681..683)
                     /gene="ABL2"
                     /note="PTKc domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212784"
     misc_feature    756..1037
                     /gene="ABL2"
                     /note="Src homology 2 (SH2) domain found in Abelson murine
                     lymphosarcoma virus (ABL) proteins; Region: SH2_ABL;
                     cd09935"
                     /db_xref="CDD:198189"
     misc_feature    order(789..791,873..875,912..914)
                     /gene="ABL2"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198189"
     misc_feature    1092..1880
                     /gene="ABL2"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Abelson kinase; Region: PTKc_Abl; cd05052"
                     /db_xref="CDD:270645"
     misc_feature    order(1131..1133,1137..1145,1194..1196,1200..1202,
                     1335..1337,1341..1343,1353..1355,1497..1499,1530..1532,
                     1584..1592,1596..1598,1620..1622,1722..1724,1734..1736)
                     /gene="ABL2"
                     /note="active site"
                     /db_xref="CDD:270645"
     misc_feature    order(1131..1133,1137..1139,1146..1148,1194..1196,
                     1200..1202,1245..1247,1257..1259,1284..1286,1332..1337,
                     1341..1343,1353..1355,1497..1499,1527..1532)
                     /gene="ABL2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1176..1181,1269..1277,1287..1289,1413..1415,
                     1509..1514,1866..1871)
                     /gene="ABL2"
                     /note="SH3/SH2 domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1407..1412,1419..1421,1674..1676,1683..1688,
                     1773..1778)
                     /gene="ABL2"
                     /note="myristoyl binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270645"
     misc_feature    1527..1601
                     /gene="ABL2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1584..1592,1596..1598,1620..1622,1722..1724,
                     1734..1736)
                     /gene="ABL2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    3414..3773
                     /gene="ABL2"
                     /note="F-actin binding domain (FABD); Region: FABD;
                     smart00808"
                     /db_xref="CDD:197885"
ORIGIN      
        1 ggcggcggcg gcagcgttaa gggcgcggag ccgcggaatg gggagggaaa aggagaatct
       61 gtgaggcgtc gagaggcagc gcggcggctg ctgtgaggag tcgggtgggg agacgccggt
      121 ggccggaccg ctcagggccg gggcctcgag tgggaaggag aggccggagc aagcgcctgg
      181 agcccgaggc cggagccgag gaggaatgtg accacgggtc ggcgggggcg cgggagtacg
      241 caagtgcagg gatggggcag caggtgggcc gcgtcgggga ggctccgggg cttcagcagt
      301 cgcaaccccg cgggatccgg ggcagcagcg cagccaggcc ctccagccgc aggcgggacc
      361 tggcggggcg caccgcagag gccggcttca atatcttcac ccagcacgat cactttgcca
      421 gctgtgtgga ggatggattt gagggagaca agactggagg cagtagtcca gaagccttgc
      481 accgccccta tggttgtgat gttgaacccc aggccctgaa tgaagccatc aggtggagct
      541 ccaaggagaa cttgcttgga gccactgaga gtgaccctaa tctcttcgtt gcactttatg
      601 atttcgtagc aagtggtgat aacacactga gtatcactaa aggtgaaaag ctacgagtcc
      661 ttggttacaa ccagaatggt gagtggagtg aagttcgctc taagaatggc caaggctggg
      721 tgccaagcaa ctacatcacc ccagtaaaca gcctggagaa acactcctgg taccatggac
      781 ctgtgtctcg cagtgcagca gagtatctac tcagcagtct aatcaatggc agcttcctgg
      841 tgcgagaaag tgagagcagc cctgggcagc tgtcaatctc gctcaggtat gaggggcgtg
      901 tgtatcacta caggatcaat accaccacag atggcaaggt ttatgtaact gctgagagcc
      961 gctttagcac cttggccgag cttgttcacc atcactccac agtggctgat ggactggtaa
     1021 caacactaca ctacccagca cccaagtgta ataagcctac agtctacggt gtgtccccta
     1081 tccatgacaa atgggaaatg gaacgaacag atattaccat gaagcacaaa cttgggggtg
     1141 gtcagtatgg agaggtttac gttggcgtct ggaagaaata tagccttacg gttgctgtga
     1201 aaacattgaa ggaagatact atggaggtgg aggaattcct aaaagaagct gcagtgatga
     1261 aggaaatcaa gcatcctaat ctggtacaac tactaggtgt atgtactttg gagccaccat
     1321 tttacattgt gactgaatac atgccttatg ggaacttgct tgattatctc cgagaatgca
     1381 accgagaaga ggtgactgca gttgtactcc tttacatggc cactcagatc tcttctgcaa
     1441 tggagtattt agagaagaag aatttcatcc atagagatct tgcagctcgt aactgcctgg
     1501 tgggagaaaa ccatgtggta aaagtggctg actttggctt gagtagattg atgactggag
     1561 acacctatac tgctcatgct ggagccaaat ttcctattaa atggacagca ccagagagtc
     1621 ttgcctacaa taccttctca attaaatctg acgtctgggc ttttggggtg ctcttgtggg
     1681 aaattgctac atatggaatg tcaccatatc caggtattga cctgtctcag gtctatgatc
     1741 tactggaaaa aggatatcga atggaacagc ctgaaggatg tccccctaag gtgtatgaac
     1801 ttatgagagc atgctggaag tggagccctg ccgacaggcc ctcttttgct gaaacacatc
     1861 aagcttttga aaccatgttc catgactcca gcatttctga agaggtagcc gaggagcttg
     1921 ggagagctgc ctcctcctca tctgttgttc catatctgcc ccgattacct atacttcctt
     1981 ctaagacccg gacgctgaag aaacaggggg agaacaagga gaatattgaa gggccacaag
     2041 atgccacaga aaattctgct tccagttcag caccaggctt cattagaagt gcacaggccc
     2101 ccagtgggtc cccagcactg cctcgaaagc aaagagacaa gtcccccagc agcctcttgg
     2161 aagatgccaa agagacatgc ttcaccagag ataggaaggg aggcttcttc agttccttca
     2221 tgaaaaagag aaatgctccc acacccccca aacgcagcag ctccttccga gaaatggaga
     2281 atcagcccca caagaaatat gaactcacgg gtaacttctc atctgttgct tctctacagc
     2341 atgctgatgg gttctctttt actgctgccc agcaagaggc gaatctggtg ccacccaagt
     2401 gctatggggg tagctttgca cagaggaacc tctgtaatga cgacagtggc gggggtgggg
     2461 gcagtagcgc tgctgggggt gggtggtctg gcatcacagg cttcttcaca ccacgcttaa
     2521 tcaaaaagac actgggctta cgagcaggta aacccacagc cagtgatgac acttccaagc
     2581 cttttccaag gtcaaactct acatcttcca tgtcctcagg gcttccagag caggatagga
     2641 tggcaatgac ccttcccagg aactgccaga ggtccaaact ccagctggaa aggacagtgt
     2701 ccacctcttc tcagccagaa gagaatgtgg atagggccaa tgacatgctt cccaaaaaat
     2761 cagaggaagg tgccgctccg accagggaga gaccaaaagc caaacttttg cccagaggag
     2821 ccaccgctct tcctctcaga accccctctg gggatccagc cattacagag aaggactctc
     2881 cagggctggg agtggctgga gtggcagctg cccccaagag cagagagagg aatggtgggg
     2941 cacgacttgg catggctgga gtcccagagg atggcgagca gacaggctgg gctgccccag
     3001 ccaaggctgc ggcggtcctc ccgaccactc acaaccacaa agtgccagtc cttatctcac
     3061 ccactctgaa gcacactcca gctgacgtgc agcttattgg cacagactct caggggaata
     3121 agttcaagct cttgtctgag catcaggtca cttcctctgg agacaaggac cgaccccgcc
     3181 gggtaaaacc aaagtgtgcc ccacccccgc cgccaggggt gagactactg cagcatccgg
     3241 ccgtgtgctc agactccacg gaagagccca tgtcagaaac acaggaggga gggaagaagg
     3301 cggctccagg ggcagtgccc atcagtggga aagctgggag gcctgtaatg cctccacctc
     3361 aagtgcctct gcccacatct tccatctcgc cagcgaaaat ggccaatggc acagcaggta
     3421 ctaaagtggc tctgagaaaa accagacagg tggctgagaa aatctcagct gacaaaatca
     3481 gtaaggaggc cctgctggaa tgtgctgacc tactgtccag tgcaatcacg gaacctgtgc
     3541 ccaacagcca gctggtggac actggacacc agctgctcga ctactgctca ggctatgtgg
     3601 actgcatccc ccaaactcgc aacaaatttg ccttccgcga ggctgtgagc aaactggaac
     3661 tcagcctgca ggagctgcag gtgtcttctg cagctgctgg tgtgcccggg gcaaaccctg
     3721 tccttaacaa cttactgtca tgtgtacagg aaatcagtga tgtggtgcag aggtagccac
     3781 cgttagccgg gtgggaagat gcacacattt ctgaggggag aggaaaaggg acttgttttc
     3841 ctgtgttctc gtttcaaaaa gtggaagact gatacttgag tgtgtttctg tgaagtacct
     3901 cagatctctg agttctcacg tttacaggtt catctcaaaa ataacaaaaa gcaaaaacca
     3961 taggagaggg aaaataggtg ggggcagggc agttgtggac cggattggaa gctgcactgg
     4021 gacatcaggg aacatgcata tgtcgtgccg tgaagaacca aatccagccc gttcttacct
     4081 ggagtgatgt gagctggtta gggctgctcc agcagggccg cagggactgt gcccagacag
     4141 tgcgttggct gtggcactca ttctgcacca cacagaaggg aattgacttg gggccccagt
     4201 aggtactaat ggtgattatg cttcaactca tctaacttat tgggtgggac agaagaaagc
     4261 tgggaatgtg ccaagagaag ttttgttcaa ggctgttgga agctactgtt agcctcactt
     4321 ccacaggtca ctgctgcagt aagaactgca gatcagatgg ctagatgcaa cactgggaaa
     4381 tgtggttctg tcagtatgct tctgtcctgt tttccattgg tgtattaatt ggtacaggag
     4441 gtaaagaatg ctaggaagta tatttaggga gattgaaacc tcctaaaatc ttacattact
     4501 tagcagaagc cacttctccc aggctaatat gttgtttcca aatggatcag gattggcttt
     4561 ctgcttgttg gtgcctatct tgtgaaccat aggcatagga gtctctttgg taattttctt
     4621 ctcccccttg ctgggcaggc tgtcttcctt tattcctggc agcattcagg gcattaacca
     4681 ccactgaaca ttattgaaaa caatggtcat gtacaggtct cacaggggaa tccttttctg
     4741 ttacagtgcc cctgcatact gacataccgg caaaggactt gagcagctgt atgtttcttt
     4801 atcaactaaa atgccaggga aagggtgtct ttttgaaatc cggtggtcag cctagaggtc
     4861 tgtgactgag tggagaagct ggcttggtcc taatggctgt ttcccctccc tcccttatca
     4921 ccttagaccc aatctaggtg gagaataggg agaagcattc tctcactcta cagtttcaaa
     4981 tgaatcaccc taaattattc tcacatgttt ttctcctctc acatactccc cctgccaatt
     5041 gttgtgcttg tttgtgaaga tcatattggg aatattcttt gatatttatt ttatcatttc
     5101 acctctattt taagaatgca tagttgaagg agcaagttat tttcggggga caccaattag
     5161 atcccagaaa cctaatgatt ccttttcctt ccctattcag ttattgttat ggaagttaat
     5221 taggatcgct tcttaattta gaaccaagtc taattggtta gatattatta atactttcga
     5281 catcaggtct aattccagtg accacttcat tctcttctta aaactttatg ccctctccat
     5341 tcctgcctcc aaggagaacg caatattaaa aaaaatacat tattttttcc tcccaaagga
     5401 atattaactt aggaagatag gaattcaaca ttgatgaaca gtgagttttc ttcctggctc
     5461 tgtcatcgat ccactgtcag gccatagccc cgtctcttaa tctattaaat caacattgat
     5521 gaacagtgag ttttcttcct ggctctgtca tcgatccact gtcaggccat agccccgtct
     5581 cttaatctat taaatggagg taatgataca tgttatcaag ggtgttttgc aaataagtgt
     5641 atagttatcc ctttgagagc ctctctggaa agctcttcag tgcagtattg ttatatatga
     5701 atacaacttt ttcattctct tctttgctca gcagcagata atgaaattta aaactgctga
     5761 gattatacta attgggctag aatactaagg ggggaaaagc attttggata gagtttggca
     5821 tctttgacca aggaggaaat ttagttttca ttagaaagaa aggaactgat tcttaccgcg
     5881 ggtgttccag aggagtccca ggccaagaga aggataagaa gggaggagac aataccgggc
     5941 attcctttca ggagttgggt gatccctgtc tgtctgttac ctacaggtgg agcacaggca
     6001 actagtgatc tggctaatct ccttgtaatg gttggaagag ttccctttaa cttggattta
     6061 aaaaccaaca gtcctactac cttcttcttt gccactctcc ttcatcatat atttccataa
     6121 acttgaaatc gttttagcaa ttagcctttt aagggtgggg cagggaaagc taaaactttg
     6181 gaatattgtt atgctgcttt ttaagtttat ccctgtcatt gtggatgcaa cttgagggat
     6241 tctaattgtt tttcagggga tttttttttt ttttttttta aagcaaggga tctttccttg
     6301 agtgctctga aaataagcct tggaggaaca ctactgagtg tatttaagct ccctggtttt
     6361 ctcatcgaag aacagtcttt gagggtgggg gctgggtctt tctcaggtgc cgcacctggc
     6421 tctgcctcgt ccgcagtagg tgctcagtaa gttcatgaat agaatggatt tttttctcat
     6481 cactgtcaag agtagcattg actgttgtag cacacccagc cacgtgatgc tttaactgtg
     6541 taacttcagg agttgagggc tcagggttca ggttaaagag gcactgtcaa cttactataa
     6601 aagtgtaact taggtttttt ccattatcta cttgaaaagg accagatttt ttaaataacc
     6661 ataggtaaat ttaaaagttt gaattcaaag cagagaaaac tgcttttaga aactaaaaat
     6721 gtagtttaat tctatctagt ttgaaaacaa agcagatagc aaaagccctt ctacaaggtg
     6781 ttgaaaactt tctaaagtgc ttgtacgtat tgtatacctt tcgggttacc acaccttcag
     6841 tcttttcatg cacagataat atgatttcag tttagattta ctaccttaaa atgcagtgtt
     6901 tagaatgcat cttgattgtg ctttacgtga agtattttct taaaaggctt tgtgtaaaaa
     6961 tgtgtatatt ttcctacaga tctccatcat gattttcaga gatatagcct taaaaaaaat
     7021 tggccctgag aaatttattc agtgtttctc cagatgacat tgaggttctt atagtggaga
     7081 ccctttctca gctgaattat ggggtttaag ttagaatttt cttaaaattc agttgcaagt
     7141 tagctagtaa aatagtgccc agttaataaa atgctgactt tcctaaggca ccacccatat
     7201 ttatttaaca aaatcatgga gattttgagc ttcaaggata cagtttagat agtggttaag
     7261 agtttagact ctaaagctag tctagaaggc aagtcactta actttcctgg gccttagttt
     7321 cctcattgga aaacagggat aataatagta actacctcag ggttgttgta aggattaaat
     7381 gagataatgt gtgtaggata gttagcttga gtgcctggca tgtaatgagt actccataaa
     7441 tgttaactac tactactatt attattaacg cttattccag tgagtcttag ccaaggacgt
     7501 gcaacaaaat ttcctggggt ttaaaaaaag aaaaacaaca aaaaacctga tgcgtcggcc
     7561 ttaccccaga tcaagaattc cccgtggggt tgggtctcag ccagtgtgtt ttccaagaat
     7621 ctctccaggt gtttcagaca cccagcactg tgtgaacact agcaataccc caactctttt
     7681 gtttttttta cagcttaaga aattggaaga gaggatggtt aagttacttg cccatattct
     7741 cagagcagtt aattagtggc agagccaagg ctagagttgg gtcttattca ctttctcatt
     7801 gtggggtctt tccaccattc ctgttgcctt gtgagacact g
//
LOCUS       XM_032604254            7802 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ABL proto-oncogene 2, non-receptor
            tyrosine kinase (ABL2), transcript variant X2, mRNA.
ACCESSION   XM_032604254
VERSION     XM_032604254.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7802
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7802
                     /gene="ABL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739683"
     CDS             276..3737
                     /gene="ABL2"
                     /codon_start=1
                     /product="tyrosine-protein kinase ABL2 isoform X2"
                     /protein_id="XP_032460145.1"
                     /db_xref="GeneID:116739683"
                     /translation="MGQQVGRVGEAPGLQQSQPRGIRGSSAARPSSRRRDLAGRTAEA
                     GFNIFTQHEALHRPYGCDVEPQALNEAIRWSSKENLLGATESDPNLFVALYDFVASGD
                     NTLSITKGEKLRVLGYNQNGEWSEVRSKNGQGWVPSNYITPVNSLEKHSWYHGPVSRS
                     AAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTTDGKVYVTAESRFS
                     TLAELVHHHSTVADGLVTTLHYPAPKCNKPTVYGVSPIHDKWEMERTDITMKHKLGGG
                     QYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEP
                     PFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLAAR
                     NCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAF
                     GVLLWEIATYGMSPYPGIDLSQVYDLLEKGYRMEQPEGCPPKVYELMRACWKWSPADR
                     PSFAETHQAFETMFHDSSISEEVAEELGRAASSSSVVPYLPRLPILPSKTRTLKKQGE
                     NKENIEGPQDATENSASSSAPGFIRSAQAPSGSPALPRKQRDKSPSSLLEDAKETCFT
                     RDRKGGFFSSFMKKRNAPTPPKRSSSFREMENQPHKKYELTGNFSSVASLQHADGFSF
                     TAAQQEANLVPPKCYGGSFAQRNLCNDDSGGGGGSSAAGGGWSGITGFFTPRLIKKTL
                     GLRAGKPTASDDTSKPFPRSNSTSSMSSGLPEQDRMAMTLPRNCQRSKLQLERTVSTS
                     SQPEENVDRANDMLPKKSEEGAAPTRERPKAKLLPRGATALPLRTPSGDPAITEKDSP
                     GLGVAGVAAAPKSRERNGGARLGMAGVPEDGEQTGWAAPAKAAAVLPTTHNHKVPVLI
                     SPTLKHTPADVQLIGTDSQGNKFKLLSEHQVTSSGDKDRPRRVKPKCAPPPPPGVRLL
                     QHPAVCSDSTEEPMSETQEGGKKAAPGAVPISGKAGRPVMPPPQVPLPTSSISPAKMA
                     NGTAGTKVALRKTRQVAEKISADKISKEALLECADLLSSAITEPVPNSQLVDTGHQLL
                     DYCSGYVDCIPQTRNKFAFREAVSKLELSLQELQVSSAAAGVPGANPVLNNLLSCVQE
                     ISDVVQR"
     misc_feature    543..704
                     /gene="ABL2"
                     /note="Src homology 3 domain of the Protein Tyrosine
                     Kinase, Abelson kinase; Region: SH3_Abl; cd11850"
                     /db_xref="CDD:212784"
     misc_feature    order(558..560,564..566,573..581,585..587,630..632,
                     642..647,678..680,684..686,690..695)
                     /gene="ABL2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212784"
     misc_feature    order(570..581,636..638,642..644)
                     /gene="ABL2"
                     /note="PTKc domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212784"
     misc_feature    717..998
                     /gene="ABL2"
                     /note="Src homology 2 (SH2) domain found in Abelson murine
                     lymphosarcoma virus (ABL) proteins; Region: SH2_ABL;
                     cd09935"
                     /db_xref="CDD:198189"
     misc_feature    order(750..752,834..836,873..875)
                     /gene="ABL2"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198189"
     misc_feature    1053..1841
                     /gene="ABL2"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Abelson kinase; Region: PTKc_Abl; cd05052"
                     /db_xref="CDD:270645"
     misc_feature    order(1092..1094,1098..1106,1155..1157,1161..1163,
                     1296..1298,1302..1304,1314..1316,1458..1460,1491..1493,
                     1545..1553,1557..1559,1581..1583,1683..1685,1695..1697)
                     /gene="ABL2"
                     /note="active site"
                     /db_xref="CDD:270645"
     misc_feature    order(1092..1094,1098..1100,1107..1109,1155..1157,
                     1161..1163,1206..1208,1218..1220,1245..1247,1293..1298,
                     1302..1304,1314..1316,1458..1460,1488..1493)
                     /gene="ABL2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1137..1142,1230..1238,1248..1250,1374..1376,
                     1470..1475,1827..1832)
                     /gene="ABL2"
                     /note="SH3/SH2 domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1368..1373,1380..1382,1635..1637,1644..1649,
                     1734..1739)
                     /gene="ABL2"
                     /note="myristoyl binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270645"
     misc_feature    1488..1562
                     /gene="ABL2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1545..1553,1557..1559,1581..1583,1683..1685,
                     1695..1697)
                     /gene="ABL2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    3375..3734
                     /gene="ABL2"
                     /note="F-actin binding domain (FABD); Region: FABD;
                     smart00808"
                     /db_xref="CDD:197885"
ORIGIN      
        1 gctcggtggt ttaaagatgg cggcggcggc ggcggcagcg ttaagggcgc ggagccgcgg
       61 aatggggagg gaaaaggaga atctgtgagg cgtcgagagg cagcgcggcg gctgctgtga
      121 ggagtcgggt ggggagacgc cggtggccgg accgctcagg gccggggcct cgagtgggaa
      181 ggagaggccg gagcaagcgc ctggagcccg aggccggagc cgaggaggaa tgtgaccacg
      241 ggtcggcggg ggcgcgggag tacgcaagtg cagggatggg gcagcaggtg ggccgcgtcg
      301 gggaggctcc ggggcttcag cagtcgcaac cccgcgggat ccggggcagc agcgcagcca
      361 ggccctccag ccgcaggcgg gacctggcgg ggcgcaccgc agaggccggc ttcaatatct
      421 tcacccagca cgaagccttg caccgcccct atggttgtga tgttgaaccc caggccctga
      481 atgaagccat caggtggagc tccaaggaga acttgcttgg agccactgag agtgacccta
      541 atctcttcgt tgcactttat gatttcgtag caagtggtga taacacactg agtatcacta
      601 aaggtgaaaa gctacgagtc cttggttaca accagaatgg tgagtggagt gaagttcgct
      661 ctaagaatgg ccaaggctgg gtgccaagca actacatcac cccagtaaac agcctggaga
      721 aacactcctg gtaccatgga cctgtgtctc gcagtgcagc agagtatcta ctcagcagtc
      781 taatcaatgg cagcttcctg gtgcgagaaa gtgagagcag ccctgggcag ctgtcaatct
      841 cgctcaggta tgaggggcgt gtgtatcact acaggatcaa taccaccaca gatggcaagg
      901 tttatgtaac tgctgagagc cgctttagca ccttggccga gcttgttcac catcactcca
      961 cagtggctga tggactggta acaacactac actacccagc acccaagtgt aataagccta
     1021 cagtctacgg tgtgtcccct atccatgaca aatgggaaat ggaacgaaca gatattacca
     1081 tgaagcacaa acttgggggt ggtcagtatg gagaggttta cgttggcgtc tggaagaaat
     1141 atagccttac ggttgctgtg aaaacattga aggaagatac tatggaggtg gaggaattcc
     1201 taaaagaagc tgcagtgatg aaggaaatca agcatcctaa tctggtacaa ctactaggtg
     1261 tatgtacttt ggagccacca ttttacattg tgactgaata catgccttat gggaacttgc
     1321 ttgattatct ccgagaatgc aaccgagaag aggtgactgc agttgtactc ctttacatgg
     1381 ccactcagat ctcttctgca atggagtatt tagagaagaa gaatttcatc catagagatc
     1441 ttgcagctcg taactgcctg gtgggagaaa accatgtggt aaaagtggct gactttggct
     1501 tgagtagatt gatgactgga gacacctata ctgctcatgc tggagccaaa tttcctatta
     1561 aatggacagc accagagagt cttgcctaca ataccttctc aattaaatct gacgtctggg
     1621 cttttggggt gctcttgtgg gaaattgcta catatggaat gtcaccatat ccaggtattg
     1681 acctgtctca ggtctatgat ctactggaaa aaggatatcg aatggaacag cctgaaggat
     1741 gtccccctaa ggtgtatgaa cttatgagag catgctggaa gtggagccct gccgacaggc
     1801 cctcttttgc tgaaacacat caagcttttg aaaccatgtt ccatgactcc agcatttctg
     1861 aagaggtagc cgaggagctt gggagagctg cctcctcctc atctgttgtt ccatatctgc
     1921 cccgattacc tatacttcct tctaagaccc ggacgctgaa gaaacagggg gagaacaagg
     1981 agaatattga agggccacaa gatgccacag aaaattctgc ttccagttca gcaccaggct
     2041 tcattagaag tgcacaggcc cccagtgggt ccccagcact gcctcgaaag caaagagaca
     2101 agtcccccag cagcctcttg gaagatgcca aagagacatg cttcaccaga gataggaagg
     2161 gaggcttctt cagttccttc atgaaaaaga gaaatgctcc cacacccccc aaacgcagca
     2221 gctccttccg agaaatggag aatcagcccc acaagaaata tgaactcacg ggtaacttct
     2281 catctgttgc ttctctacag catgctgatg ggttctcttt tactgctgcc cagcaagagg
     2341 cgaatctggt gccacccaag tgctatgggg gtagctttgc acagaggaac ctctgtaatg
     2401 acgacagtgg cgggggtggg ggcagtagcg ctgctggggg tgggtggtct ggcatcacag
     2461 gcttcttcac accacgctta atcaaaaaga cactgggctt acgagcaggt aaacccacag
     2521 ccagtgatga cacttccaag ccttttccaa ggtcaaactc tacatcttcc atgtcctcag
     2581 ggcttccaga gcaggatagg atggcaatga cccttcccag gaactgccag aggtccaaac
     2641 tccagctgga aaggacagtg tccacctctt ctcagccaga agagaatgtg gatagggcca
     2701 atgacatgct tcccaaaaaa tcagaggaag gtgccgctcc gaccagggag agaccaaaag
     2761 ccaaactttt gcccagagga gccaccgctc ttcctctcag aaccccctct ggggatccag
     2821 ccattacaga gaaggactct ccagggctgg gagtggctgg agtggcagct gcccccaaga
     2881 gcagagagag gaatggtggg gcacgacttg gcatggctgg agtcccagag gatggcgagc
     2941 agacaggctg ggctgcccca gccaaggctg cggcggtcct cccgaccact cacaaccaca
     3001 aagtgccagt ccttatctca cccactctga agcacactcc agctgacgtg cagcttattg
     3061 gcacagactc tcaggggaat aagttcaagc tcttgtctga gcatcaggtc acttcctctg
     3121 gagacaagga ccgaccccgc cgggtaaaac caaagtgtgc cccacccccg ccgccagggg
     3181 tgagactact gcagcatccg gccgtgtgct cagactccac ggaagagccc atgtcagaaa
     3241 cacaggaggg agggaagaag gcggctccag gggcagtgcc catcagtggg aaagctggga
     3301 ggcctgtaat gcctccacct caagtgcctc tgcccacatc ttccatctcg ccagcgaaaa
     3361 tggccaatgg cacagcaggt actaaagtgg ctctgagaaa aaccagacag gtggctgaga
     3421 aaatctcagc tgacaaaatc agtaaggagg ccctgctgga atgtgctgac ctactgtcca
     3481 gtgcaatcac ggaacctgtg cccaacagcc agctggtgga cactggacac cagctgctcg
     3541 actactgctc aggctatgtg gactgcatcc cccaaactcg caacaaattt gccttccgcg
     3601 aggctgtgag caaactggaa ctcagcctgc aggagctgca ggtgtcttct gcagctgctg
     3661 gtgtgcccgg ggcaaaccct gtccttaaca acttactgtc atgtgtacag gaaatcagtg
     3721 atgtggtgca gaggtagcca ccgttagccg ggtgggaaga tgcacacatt tctgagggga
     3781 gaggaaaagg gacttgtttt cctgtgttct cgtttcaaaa agtggaagac tgatacttga
     3841 gtgtgtttct gtgaagtacc tcagatctct gagttctcac gtttacaggt tcatctcaaa
     3901 aataacaaaa agcaaaaacc ataggagagg gaaaataggt gggggcaggg cagttgtgga
     3961 ccggattgga agctgcactg ggacatcagg gaacatgcat atgtcgtgcc gtgaagaacc
     4021 aaatccagcc cgttcttacc tggagtgatg tgagctggtt agggctgctc cagcagggcc
     4081 gcagggactg tgcccagaca gtgcgttggc tgtggcactc attctgcacc acacagaagg
     4141 gaattgactt ggggccccag taggtactaa tggtgattat gcttcaactc atctaactta
     4201 ttgggtggga cagaagaaag ctgggaatgt gccaagagaa gttttgttca aggctgttgg
     4261 aagctactgt tagcctcact tccacaggtc actgctgcag taagaactgc agatcagatg
     4321 gctagatgca acactgggaa atgtggttct gtcagtatgc ttctgtcctg ttttccattg
     4381 gtgtattaat tggtacagga ggtaaagaat gctaggaagt atatttaggg agattgaaac
     4441 ctcctaaaat cttacattac ttagcagaag ccacttctcc caggctaata tgttgtttcc
     4501 aaatggatca ggattggctt tctgcttgtt ggtgcctatc ttgtgaacca taggcatagg
     4561 agtctctttg gtaattttct tctccccctt gctgggcagg ctgtcttcct ttattcctgg
     4621 cagcattcag ggcattaacc accactgaac attattgaaa acaatggtca tgtacaggtc
     4681 tcacagggga atccttttct gttacagtgc ccctgcatac tgacataccg gcaaaggact
     4741 tgagcagctg tatgtttctt tatcaactaa aatgccaggg aaagggtgtc tttttgaaat
     4801 ccggtggtca gcctagaggt ctgtgactga gtggagaagc tggcttggtc ctaatggctg
     4861 tttcccctcc ctcccttatc accttagacc caatctaggt ggagaatagg gagaagcatt
     4921 ctctcactct acagtttcaa atgaatcacc ctaaattatt ctcacatgtt tttctcctct
     4981 cacatactcc ccctgccaat tgttgtgctt gtttgtgaag atcatattgg gaatattctt
     5041 tgatatttat tttatcattt cacctctatt ttaagaatgc atagttgaag gagcaagtta
     5101 ttttcggggg acaccaatta gatcccagaa acctaatgat tccttttcct tccctattca
     5161 gttattgtta tggaagttaa ttaggatcgc ttcttaattt agaaccaagt ctaattggtt
     5221 agatattatt aatactttcg acatcaggtc taattccagt gaccacttca ttctcttctt
     5281 aaaactttat gccctctcca ttcctgcctc caaggagaac gcaatattaa aaaaaataca
     5341 ttattttttc ctcccaaagg aatattaact taggaagata ggaattcaac attgatgaac
     5401 agtgagtttt cttcctggct ctgtcatcga tccactgtca ggccatagcc ccgtctctta
     5461 atctattaaa tcaacattga tgaacagtga gttttcttcc tggctctgtc atcgatccac
     5521 tgtcaggcca tagccccgtc tcttaatcta ttaaatggag gtaatgatac atgttatcaa
     5581 gggtgttttg caaataagtg tatagttatc cctttgagag cctctctgga aagctcttca
     5641 gtgcagtatt gttatatatg aatacaactt tttcattctc ttctttgctc agcagcagat
     5701 aatgaaattt aaaactgctg agattatact aattgggcta gaatactaag gggggaaaag
     5761 cattttggat agagtttggc atctttgacc aaggaggaaa tttagttttc attagaaaga
     5821 aaggaactga ttcttaccgc gggtgttcca gaggagtccc aggccaagag aaggataaga
     5881 agggaggaga caataccggg cattcctttc aggagttggg tgatccctgt ctgtctgtta
     5941 cctacaggtg gagcacaggc aactagtgat ctggctaatc tccttgtaat ggttggaaga
     6001 gttcccttta acttggattt aaaaaccaac agtcctacta ccttcttctt tgccactctc
     6061 cttcatcata tatttccata aacttgaaat cgttttagca attagccttt taagggtggg
     6121 gcagggaaag ctaaaacttt ggaatattgt tatgctgctt tttaagttta tccctgtcat
     6181 tgtggatgca acttgaggga ttctaattgt ttttcagggg attttttttt tttttttttt
     6241 aaagcaaggg atctttcctt gagtgctctg aaaataagcc ttggaggaac actactgagt
     6301 gtatttaagc tccctggttt tctcatcgaa gaacagtctt tgagggtggg ggctgggtct
     6361 ttctcaggtg ccgcacctgg ctctgcctcg tccgcagtag gtgctcagta agttcatgaa
     6421 tagaatggat ttttttctca tcactgtcaa gagtagcatt gactgttgta gcacacccag
     6481 ccacgtgatg ctttaactgt gtaacttcag gagttgaggg ctcagggttc aggttaaaga
     6541 ggcactgtca acttactata aaagtgtaac ttaggttttt tccattatct acttgaaaag
     6601 gaccagattt tttaaataac cataggtaaa tttaaaagtt tgaattcaaa gcagagaaaa
     6661 ctgcttttag aaactaaaaa tgtagtttaa ttctatctag tttgaaaaca aagcagatag
     6721 caaaagccct tctacaaggt gttgaaaact ttctaaagtg cttgtacgta ttgtatacct
     6781 ttcgggttac cacaccttca gtcttttcat gcacagataa tatgatttca gtttagattt
     6841 actaccttaa aatgcagtgt ttagaatgca tcttgattgt gctttacgtg aagtattttc
     6901 ttaaaaggct ttgtgtaaaa atgtgtatat tttcctacag atctccatca tgattttcag
     6961 agatatagcc ttaaaaaaaa ttggccctga gaaatttatt cagtgtttct ccagatgaca
     7021 ttgaggttct tatagtggag accctttctc agctgaatta tggggtttaa gttagaattt
     7081 tcttaaaatt cagttgcaag ttagctagta aaatagtgcc cagttaataa aatgctgact
     7141 ttcctaaggc accacccata tttatttaac aaaatcatgg agattttgag cttcaaggat
     7201 acagtttaga tagtggttaa gagtttagac tctaaagcta gtctagaagg caagtcactt
     7261 aactttcctg ggccttagtt tcctcattgg aaaacaggga taataatagt aactacctca
     7321 gggttgttgt aaggattaaa tgagataatg tgtgtaggat agttagcttg agtgcctggc
     7381 atgtaatgag tactccataa atgttaacta ctactactat tattattaac gcttattcca
     7441 gtgagtctta gccaaggacg tgcaacaaaa tttcctgggg tttaaaaaaa gaaaaacaac
     7501 aaaaaacctg atgcgtcggc cttaccccag atcaagaatt ccccgtgggg ttgggtctca
     7561 gccagtgtgt tttccaagaa tctctccagg tgtttcagac acccagcact gtgtgaacac
     7621 tagcaatacc ccaactcttt tgtttttttt acagcttaag aaattggaag agaggatggt
     7681 taagttactt gcccatattc tcagagcagt taattagtgg cagagccaag gctagagttg
     7741 ggtcttattc actttctcat tgtggggtct ttccaccatt cctgttgcct tgtgagacac
     7801 tg
//
LOCUS       XM_032604264            7680 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ABL proto-oncogene 2, non-receptor
            tyrosine kinase (ABL2), transcript variant X3, mRNA.
ACCESSION   XM_032604264
VERSION     XM_032604264.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7680
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7680
                     /gene="ABL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 16 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739683"
     CDS             232..3615
                     /gene="ABL2"
                     /codon_start=1
                     /product="tyrosine-protein kinase ABL2 isoform X3"
                     /protein_id="XP_032460155.1"
                     /db_xref="GeneID:116739683"
                     /translation="MLVFYNHFASCVEDGFEGDKTGGSSPEALHRPYGCDVEPQALNE
                     AIRWSSKENLLGATESDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNQNGEWSEVR
                     SKNGQGWVPSNYITPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQL
                     SISLRYEGRVYHYRINTTTDGKVYVTAESRFSTLAELVHHHSTVADGLVTTLHYPAPK
                     CNKPTVYGVSPIHDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKEDT
                     MEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEV
                     TAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTY
                     TAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYDL
                     LEKGYRMEQPEGCPPKVYELMRACWKWSPADRPSFAETHQAFETMFHDSSISEEVAEE
                     LGRAASSSSVVPYLPRLPILPSKTRTLKKQGENKENIEGPQDATENSASSSAPGFIRS
                     AQAPSGSPALPRKQRDKSPSSLLEDAKETCFTRDRKGGFFSSFMKKRNAPTPPKRSSS
                     FREMENQPHKKYELTGNFSSVASLQHADGFSFTAAQQEANLVPPKCYGGSFAQRNLCN
                     DDSGGGGGSSAAGGGWSGITGFFTPRLIKKTLGLRAGKPTASDDTSKPFPRSNSTSSM
                     SSGLPEQDRMAMTLPRNCQRSKLQLERTVSTSSQPEENVDRANDMLPKKSEEGAAPTR
                     ERPKAKLLPRGATALPLRTPSGDPAITEKDSPGLGVAGVAAAPKSRERNGGARLGMAG
                     VPEDGEQTGWAAPAKAAAVLPTTHNHKVPVLISPTLKHTPADVQLIGTDSQGNKFKLL
                     SEHQVTSSGDKDRPRRVKPKCAPPPPPGVRLLQHPAVCSDSTEEPMSETQEGGKKAAP
                     GAVPISGKAGRPVMPPPQVPLPTSSISPAKMANGTAGTKVALRKTRQVAEKISADKIS
                     KEALLECADLLSSAITEPVPNSQLVDTGHQLLDYCSGYVDCIPQTRNKFAFREAVSKL
                     ELSLQELQVSSAAAGVPGANPVLNNLLSCVQEISDVVQR"
     misc_feature    421..582
                     /gene="ABL2"
                     /note="Src homology 3 domain of the Protein Tyrosine
                     Kinase, Abelson kinase; Region: SH3_Abl; cd11850"
                     /db_xref="CDD:212784"
     misc_feature    order(436..438,442..444,451..459,463..465,508..510,
                     520..525,556..558,562..564,568..573)
                     /gene="ABL2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212784"
     misc_feature    order(448..459,514..516,520..522)
                     /gene="ABL2"
                     /note="PTKc domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212784"
     misc_feature    595..876
                     /gene="ABL2"
                     /note="Src homology 2 (SH2) domain found in Abelson murine
                     lymphosarcoma virus (ABL) proteins; Region: SH2_ABL;
                     cd09935"
                     /db_xref="CDD:198189"
     misc_feature    order(628..630,712..714,751..753)
                     /gene="ABL2"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198189"
     misc_feature    931..1719
                     /gene="ABL2"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Abelson kinase; Region: PTKc_Abl; cd05052"
                     /db_xref="CDD:270645"
     misc_feature    order(970..972,976..984,1033..1035,1039..1041,1174..1176,
                     1180..1182,1192..1194,1336..1338,1369..1371,1423..1431,
                     1435..1437,1459..1461,1561..1563,1573..1575)
                     /gene="ABL2"
                     /note="active site"
                     /db_xref="CDD:270645"
     misc_feature    order(970..972,976..978,985..987,1033..1035,1039..1041,
                     1084..1086,1096..1098,1123..1125,1171..1176,1180..1182,
                     1192..1194,1336..1338,1366..1371)
                     /gene="ABL2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1015..1020,1108..1116,1126..1128,1252..1254,
                     1348..1353,1705..1710)
                     /gene="ABL2"
                     /note="SH3/SH2 domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1246..1251,1258..1260,1513..1515,1522..1527,
                     1612..1617)
                     /gene="ABL2"
                     /note="myristoyl binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270645"
     misc_feature    1366..1440
                     /gene="ABL2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1423..1431,1435..1437,1459..1461,1561..1563,
                     1573..1575)
                     /gene="ABL2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    3253..3612
                     /gene="ABL2"
                     /note="F-actin binding domain (FABD); Region: FABD;
                     smart00808"
                     /db_xref="CDD:197885"
ORIGIN      
        1 ggggcttcag cagtcgcaac cccgcgggat ccggggcagc agcgcagcca ggccctccag
       61 ccgcaggcgg gacctggcgg ggcgcaccgc agaggccggc ttcaatatct tcacccagca
      121 cgtttgtact caaactttca aggtttttgg cctgaggaac tgaaaagatg gacttgccat
      181 taactgaggt ggaaaattct gtgagagcag cacatttggg ggaaagaatg gatgctagtt
      241 ttttataatc actttgccag ctgtgtggag gatggatttg agggagacaa gactggaggc
      301 agtagtccag aagccttgca ccgcccctat ggttgtgatg ttgaacccca ggccctgaat
      361 gaagccatca ggtggagctc caaggagaac ttgcttggag ccactgagag tgaccctaat
      421 ctcttcgttg cactttatga tttcgtagca agtggtgata acacactgag tatcactaaa
      481 ggtgaaaagc tacgagtcct tggttacaac cagaatggtg agtggagtga agttcgctct
      541 aagaatggcc aaggctgggt gccaagcaac tacatcaccc cagtaaacag cctggagaaa
      601 cactcctggt accatggacc tgtgtctcgc agtgcagcag agtatctact cagcagtcta
      661 atcaatggca gcttcctggt gcgagaaagt gagagcagcc ctgggcagct gtcaatctcg
      721 ctcaggtatg aggggcgtgt gtatcactac aggatcaata ccaccacaga tggcaaggtt
      781 tatgtaactg ctgagagccg ctttagcacc ttggccgagc ttgttcacca tcactccaca
      841 gtggctgatg gactggtaac aacactacac tacccagcac ccaagtgtaa taagcctaca
      901 gtctacggtg tgtcccctat ccatgacaaa tgggaaatgg aacgaacaga tattaccatg
      961 aagcacaaac ttgggggtgg tcagtatgga gaggtttacg ttggcgtctg gaagaaatat
     1021 agccttacgg ttgctgtgaa aacattgaag gaagatacta tggaggtgga ggaattccta
     1081 aaagaagctg cagtgatgaa ggaaatcaag catcctaatc tggtacaact actaggtgta
     1141 tgtactttgg agccaccatt ttacattgtg actgaataca tgccttatgg gaacttgctt
     1201 gattatctcc gagaatgcaa ccgagaagag gtgactgcag ttgtactcct ttacatggcc
     1261 actcagatct cttctgcaat ggagtattta gagaagaaga atttcatcca tagagatctt
     1321 gcagctcgta actgcctggt gggagaaaac catgtggtaa aagtggctga ctttggcttg
     1381 agtagattga tgactggaga cacctatact gctcatgctg gagccaaatt tcctattaaa
     1441 tggacagcac cagagagtct tgcctacaat accttctcaa ttaaatctga cgtctgggct
     1501 tttggggtgc tcttgtggga aattgctaca tatggaatgt caccatatcc aggtattgac
     1561 ctgtctcagg tctatgatct actggaaaaa ggatatcgaa tggaacagcc tgaaggatgt
     1621 ccccctaagg tgtatgaact tatgagagca tgctggaagt ggagccctgc cgacaggccc
     1681 tcttttgctg aaacacatca agcttttgaa accatgttcc atgactccag catttctgaa
     1741 gaggtagccg aggagcttgg gagagctgcc tcctcctcat ctgttgttcc atatctgccc
     1801 cgattaccta tacttccttc taagacccgg acgctgaaga aacaggggga gaacaaggag
     1861 aatattgaag ggccacaaga tgccacagaa aattctgctt ccagttcagc accaggcttc
     1921 attagaagtg cacaggcccc cagtgggtcc ccagcactgc ctcgaaagca aagagacaag
     1981 tcccccagca gcctcttgga agatgccaaa gagacatgct tcaccagaga taggaaggga
     2041 ggcttcttca gttccttcat gaaaaagaga aatgctccca caccccccaa acgcagcagc
     2101 tccttccgag aaatggagaa tcagccccac aagaaatatg aactcacggg taacttctca
     2161 tctgttgctt ctctacagca tgctgatggg ttctctttta ctgctgccca gcaagaggcg
     2221 aatctggtgc cacccaagtg ctatgggggt agctttgcac agaggaacct ctgtaatgac
     2281 gacagtggcg ggggtggggg cagtagcgct gctgggggtg ggtggtctgg catcacaggc
     2341 ttcttcacac cacgcttaat caaaaagaca ctgggcttac gagcaggtaa acccacagcc
     2401 agtgatgaca cttccaagcc ttttccaagg tcaaactcta catcttccat gtcctcaggg
     2461 cttccagagc aggataggat ggcaatgacc cttcccagga actgccagag gtccaaactc
     2521 cagctggaaa ggacagtgtc cacctcttct cagccagaag agaatgtgga tagggccaat
     2581 gacatgcttc ccaaaaaatc agaggaaggt gccgctccga ccagggagag accaaaagcc
     2641 aaacttttgc ccagaggagc caccgctctt cctctcagaa ccccctctgg ggatccagcc
     2701 attacagaga aggactctcc agggctggga gtggctggag tggcagctgc ccccaagagc
     2761 agagagagga atggtggggc acgacttggc atggctggag tcccagagga tggcgagcag
     2821 acaggctggg ctgccccagc caaggctgcg gcggtcctcc cgaccactca caaccacaaa
     2881 gtgccagtcc ttatctcacc cactctgaag cacactccag ctgacgtgca gcttattggc
     2941 acagactctc aggggaataa gttcaagctc ttgtctgagc atcaggtcac ttcctctgga
     3001 gacaaggacc gaccccgccg ggtaaaacca aagtgtgccc cacccccgcc gccaggggtg
     3061 agactactgc agcatccggc cgtgtgctca gactccacgg aagagcccat gtcagaaaca
     3121 caggagggag ggaagaaggc ggctccaggg gcagtgccca tcagtgggaa agctgggagg
     3181 cctgtaatgc ctccacctca agtgcctctg cccacatctt ccatctcgcc agcgaaaatg
     3241 gccaatggca cagcaggtac taaagtggct ctgagaaaaa ccagacaggt ggctgagaaa
     3301 atctcagctg acaaaatcag taaggaggcc ctgctggaat gtgctgacct actgtccagt
     3361 gcaatcacgg aacctgtgcc caacagccag ctggtggaca ctggacacca gctgctcgac
     3421 tactgctcag gctatgtgga ctgcatcccc caaactcgca acaaatttgc cttccgcgag
     3481 gctgtgagca aactggaact cagcctgcag gagctgcagg tgtcttctgc agctgctggt
     3541 gtgcccgggg caaaccctgt ccttaacaac ttactgtcat gtgtacagga aatcagtgat
     3601 gtggtgcaga ggtagccacc gttagccggg tgggaagatg cacacatttc tgaggggaga
     3661 ggaaaaggga cttgttttcc tgtgttctcg tttcaaaaag tggaagactg atacttgagt
     3721 gtgtttctgt gaagtacctc agatctctga gttctcacgt ttacaggttc atctcaaaaa
     3781 taacaaaaag caaaaaccat aggagaggga aaataggtgg gggcagggca gttgtggacc
     3841 ggattggaag ctgcactggg acatcaggga acatgcatat gtcgtgccgt gaagaaccaa
     3901 atccagcccg ttcttacctg gagtgatgtg agctggttag ggctgctcca gcagggccgc
     3961 agggactgtg cccagacagt gcgttggctg tggcactcat tctgcaccac acagaaggga
     4021 attgacttgg ggccccagta ggtactaatg gtgattatgc ttcaactcat ctaacttatt
     4081 gggtgggaca gaagaaagct gggaatgtgc caagagaagt tttgttcaag gctgttggaa
     4141 gctactgtta gcctcacttc cacaggtcac tgctgcagta agaactgcag atcagatggc
     4201 tagatgcaac actgggaaat gtggttctgt cagtatgctt ctgtcctgtt ttccattggt
     4261 gtattaattg gtacaggagg taaagaatgc taggaagtat atttagggag attgaaacct
     4321 cctaaaatct tacattactt agcagaagcc acttctccca ggctaatatg ttgtttccaa
     4381 atggatcagg attggctttc tgcttgttgg tgcctatctt gtgaaccata ggcataggag
     4441 tctctttggt aattttcttc tcccccttgc tgggcaggct gtcttccttt attcctggca
     4501 gcattcaggg cattaaccac cactgaacat tattgaaaac aatggtcatg tacaggtctc
     4561 acaggggaat ccttttctgt tacagtgccc ctgcatactg acataccggc aaaggacttg
     4621 agcagctgta tgtttcttta tcaactaaaa tgccagggaa agggtgtctt tttgaaatcc
     4681 ggtggtcagc ctagaggtct gtgactgagt ggagaagctg gcttggtcct aatggctgtt
     4741 tcccctccct cccttatcac cttagaccca atctaggtgg agaataggga gaagcattct
     4801 ctcactctac agtttcaaat gaatcaccct aaattattct cacatgtttt tctcctctca
     4861 catactcccc ctgccaattg ttgtgcttgt ttgtgaagat catattggga atattctttg
     4921 atatttattt tatcatttca cctctatttt aagaatgcat agttgaagga gcaagttatt
     4981 ttcgggggac accaattaga tcccagaaac ctaatgattc cttttccttc cctattcagt
     5041 tattgttatg gaagttaatt aggatcgctt cttaatttag aaccaagtct aattggttag
     5101 atattattaa tactttcgac atcaggtcta attccagtga ccacttcatt ctcttcttaa
     5161 aactttatgc cctctccatt cctgcctcca aggagaacgc aatattaaaa aaaatacatt
     5221 attttttcct cccaaaggaa tattaactta ggaagatagg aattcaacat tgatgaacag
     5281 tgagttttct tcctggctct gtcatcgatc cactgtcagg ccatagcccc gtctcttaat
     5341 ctattaaatc aacattgatg aacagtgagt tttcttcctg gctctgtcat cgatccactg
     5401 tcaggccata gccccgtctc ttaatctatt aaatggaggt aatgatacat gttatcaagg
     5461 gtgttttgca aataagtgta tagttatccc tttgagagcc tctctggaaa gctcttcagt
     5521 gcagtattgt tatatatgaa tacaactttt tcattctctt ctttgctcag cagcagataa
     5581 tgaaatttaa aactgctgag attatactaa ttgggctaga atactaaggg gggaaaagca
     5641 ttttggatag agtttggcat ctttgaccaa ggaggaaatt tagttttcat tagaaagaaa
     5701 ggaactgatt cttaccgcgg gtgttccaga ggagtcccag gccaagagaa ggataagaag
     5761 ggaggagaca ataccgggca ttcctttcag gagttgggtg atccctgtct gtctgttacc
     5821 tacaggtgga gcacaggcaa ctagtgatct ggctaatctc cttgtaatgg ttggaagagt
     5881 tccctttaac ttggatttaa aaaccaacag tcctactacc ttcttctttg ccactctcct
     5941 tcatcatata tttccataaa cttgaaatcg ttttagcaat tagcctttta agggtggggc
     6001 agggaaagct aaaactttgg aatattgtta tgctgctttt taagtttatc cctgtcattg
     6061 tggatgcaac ttgagggatt ctaattgttt ttcaggggat tttttttttt ttttttttaa
     6121 agcaagggat ctttccttga gtgctctgaa aataagcctt ggaggaacac tactgagtgt
     6181 atttaagctc cctggttttc tcatcgaaga acagtctttg agggtggggg ctgggtcttt
     6241 ctcaggtgcc gcacctggct ctgcctcgtc cgcagtaggt gctcagtaag ttcatgaata
     6301 gaatggattt ttttctcatc actgtcaaga gtagcattga ctgttgtagc acacccagcc
     6361 acgtgatgct ttaactgtgt aacttcagga gttgagggct cagggttcag gttaaagagg
     6421 cactgtcaac ttactataaa agtgtaactt aggttttttc cattatctac ttgaaaagga
     6481 ccagattttt taaataacca taggtaaatt taaaagtttg aattcaaagc agagaaaact
     6541 gcttttagaa actaaaaatg tagtttaatt ctatctagtt tgaaaacaaa gcagatagca
     6601 aaagcccttc tacaaggtgt tgaaaacttt ctaaagtgct tgtacgtatt gtataccttt
     6661 cgggttacca caccttcagt cttttcatgc acagataata tgatttcagt ttagatttac
     6721 taccttaaaa tgcagtgttt agaatgcatc ttgattgtgc tttacgtgaa gtattttctt
     6781 aaaaggcttt gtgtaaaaat gtgtatattt tcctacagat ctccatcatg attttcagag
     6841 atatagcctt aaaaaaaatt ggccctgaga aatttattca gtgtttctcc agatgacatt
     6901 gaggttctta tagtggagac cctttctcag ctgaattatg gggtttaagt tagaattttc
     6961 ttaaaattca gttgcaagtt agctagtaaa atagtgccca gttaataaaa tgctgacttt
     7021 cctaaggcac cacccatatt tatttaacaa aatcatggag attttgagct tcaaggatac
     7081 agtttagata gtggttaaga gtttagactc taaagctagt ctagaaggca agtcacttaa
     7141 ctttcctggg ccttagtttc ctcattggaa aacagggata ataatagtaa ctacctcagg
     7201 gttgttgtaa ggattaaatg agataatgtg tgtaggatag ttagcttgag tgcctggcat
     7261 gtaatgagta ctccataaat gttaactact actactatta ttattaacgc ttattccagt
     7321 gagtcttagc caaggacgtg caacaaaatt tcctggggtt taaaaaaaga aaaacaacaa
     7381 aaaacctgat gcgtcggcct taccccagat caagaattcc ccgtggggtt gggtctcagc
     7441 cagtgtgttt tccaagaatc tctccaggtg tttcagacac ccagcactgt gtgaacacta
     7501 gcaatacccc aactcttttg ttttttttac agcttaagaa attggaagag aggatggtta
     7561 agttacttgc ccatattctc agagcagtta attagtggca gagccaaggc tagagttggg
     7621 tcttattcac tttctcattg tggggtcttt ccaccattcc tgttgccttg tgagacactg
//
LOCUS       XM_032604273            7532 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ABL proto-oncogene 2, non-receptor
            tyrosine kinase (ABL2), transcript variant X4, mRNA.
ACCESSION   XM_032604273
VERSION     XM_032604273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7532
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7532
                     /gene="ABL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 18 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739683"
     CDS             252..3467
                     /gene="ABL2"
                     /codon_start=1
                     /product="tyrosine-protein kinase ABL2 isoform X4"
                     /protein_id="XP_032460164.1"
                     /db_xref="GeneID:116739683"
                     /translation="MGQQVGRVGEAPGLQQSQPRGIRGSSAARPSSRRRDLAGRTAEA
                     GFNIFTQHDHFASCVEDGFEGDKTGGSSPEALHRPYGCDVEPQALNEAIRWSSKENLL
                     GATESDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNQNGEWSEVRSKNGQGWVPSN
                     YITPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVY
                     HYRINTTTDGKVYVTAESRFSTLAELVHHHSTVADGLVTTLHYPAPKCNKPTVYGVSP
                     IHDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAA
                     VMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQ
                     ISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIK
                     WTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYDLLEKGYRMEQPE
                     GCPPKVYELMRACWKWSPADRPSFAETHQAFETMFHDSSISEEVAEELGRAASSSSVV
                     PYLPRLPILPSKTRTLKKQGENKENIEGPQDATENSASSSAPGFIRSAQAPSGSPALP
                     RKQRDKSPSSLLEDAKETCFTRDRKGGFFSSFMKKRNAPTPPKRSSSFREMENQPHKK
                     YELTGLPEQDRMAMTLPRNCQRSKLQLERTVSTSSQPEENVDRANDMLPKKSEEGAAP
                     TRERPKAKLLPRGATALPLRTPSGDPAITEKDSPGLGVAGVAAAPKSRERNGGARLGM
                     AGVPEDGEQTGWAAPAKAAAVLPTTHNHKVPVLISPTLKHTPADVQLIGTDSQGNKFK
                     LLSEHQVTSSGDKDRPRRVKPKCAPPPPPGVRLLQHPAVCSDSTEEPMSETQEGGKKA
                     APGAVPISGKAGRPVMPPPQVPLPTSSISPAKMANGTAGTKVALRKTRQVAEKISADK
                     ISKEALLECADLLSSAITEPVPNSQLVDTGHQLLDYCSGYVDCIPQTRNKFAFREAVS
                     KLELSLQELQVSSAAAGVPGANPVLNNLLSCVQEISDVVQR"
     misc_feature    582..743
                     /gene="ABL2"
                     /note="Src homology 3 domain of the Protein Tyrosine
                     Kinase, Abelson kinase; Region: SH3_Abl; cd11850"
                     /db_xref="CDD:212784"
     misc_feature    order(597..599,603..605,612..620,624..626,669..671,
                     681..686,717..719,723..725,729..734)
                     /gene="ABL2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212784"
     misc_feature    order(609..620,675..677,681..683)
                     /gene="ABL2"
                     /note="PTKc domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212784"
     misc_feature    756..1037
                     /gene="ABL2"
                     /note="Src homology 2 (SH2) domain found in Abelson murine
                     lymphosarcoma virus (ABL) proteins; Region: SH2_ABL;
                     cd09935"
                     /db_xref="CDD:198189"
     misc_feature    order(789..791,873..875,912..914)
                     /gene="ABL2"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198189"
     misc_feature    1092..1880
                     /gene="ABL2"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Abelson kinase; Region: PTKc_Abl; cd05052"
                     /db_xref="CDD:270645"
     misc_feature    order(1131..1133,1137..1145,1194..1196,1200..1202,
                     1335..1337,1341..1343,1353..1355,1497..1499,1530..1532,
                     1584..1592,1596..1598,1620..1622,1722..1724,1734..1736)
                     /gene="ABL2"
                     /note="active site"
                     /db_xref="CDD:270645"
     misc_feature    order(1131..1133,1137..1139,1146..1148,1194..1196,
                     1200..1202,1245..1247,1257..1259,1284..1286,1332..1337,
                     1341..1343,1353..1355,1497..1499,1527..1532)
                     /gene="ABL2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1176..1181,1269..1277,1287..1289,1413..1415,
                     1509..1514,1866..1871)
                     /gene="ABL2"
                     /note="SH3/SH2 domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1407..1412,1419..1421,1674..1676,1683..1688,
                     1773..1778)
                     /gene="ABL2"
                     /note="myristoyl binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270645"
     misc_feature    1527..1601
                     /gene="ABL2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1584..1592,1596..1598,1620..1622,1722..1724,
                     1734..1736)
                     /gene="ABL2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    3105..3464
                     /gene="ABL2"
                     /note="F-actin binding domain (FABD); Region: FABD;
                     smart00808"
                     /db_xref="CDD:197885"
ORIGIN      
        1 ggcggcggcg gcagcgttaa gggcgcggag ccgcggaatg gggagggaaa aggagaatct
       61 gtgaggcgtc gagaggcagc gcggcggctg ctgtgaggag tcgggtgggg agacgccggt
      121 ggccggaccg ctcagggccg gggcctcgag tgggaaggag aggccggagc aagcgcctgg
      181 agcccgaggc cggagccgag gaggaatgtg accacgggtc ggcgggggcg cgggagtacg
      241 caagtgcagg gatggggcag caggtgggcc gcgtcgggga ggctccgggg cttcagcagt
      301 cgcaaccccg cgggatccgg ggcagcagcg cagccaggcc ctccagccgc aggcgggacc
      361 tggcggggcg caccgcagag gccggcttca atatcttcac ccagcacgat cactttgcca
      421 gctgtgtgga ggatggattt gagggagaca agactggagg cagtagtcca gaagccttgc
      481 accgccccta tggttgtgat gttgaacccc aggccctgaa tgaagccatc aggtggagct
      541 ccaaggagaa cttgcttgga gccactgaga gtgaccctaa tctcttcgtt gcactttatg
      601 atttcgtagc aagtggtgat aacacactga gtatcactaa aggtgaaaag ctacgagtcc
      661 ttggttacaa ccagaatggt gagtggagtg aagttcgctc taagaatggc caaggctggg
      721 tgccaagcaa ctacatcacc ccagtaaaca gcctggagaa acactcctgg taccatggac
      781 ctgtgtctcg cagtgcagca gagtatctac tcagcagtct aatcaatggc agcttcctgg
      841 tgcgagaaag tgagagcagc cctgggcagc tgtcaatctc gctcaggtat gaggggcgtg
      901 tgtatcacta caggatcaat accaccacag atggcaaggt ttatgtaact gctgagagcc
      961 gctttagcac cttggccgag cttgttcacc atcactccac agtggctgat ggactggtaa
     1021 caacactaca ctacccagca cccaagtgta ataagcctac agtctacggt gtgtccccta
     1081 tccatgacaa atgggaaatg gaacgaacag atattaccat gaagcacaaa cttgggggtg
     1141 gtcagtatgg agaggtttac gttggcgtct ggaagaaata tagccttacg gttgctgtga
     1201 aaacattgaa ggaagatact atggaggtgg aggaattcct aaaagaagct gcagtgatga
     1261 aggaaatcaa gcatcctaat ctggtacaac tactaggtgt atgtactttg gagccaccat
     1321 tttacattgt gactgaatac atgccttatg ggaacttgct tgattatctc cgagaatgca
     1381 accgagaaga ggtgactgca gttgtactcc tttacatggc cactcagatc tcttctgcaa
     1441 tggagtattt agagaagaag aatttcatcc atagagatct tgcagctcgt aactgcctgg
     1501 tgggagaaaa ccatgtggta aaagtggctg actttggctt gagtagattg atgactggag
     1561 acacctatac tgctcatgct ggagccaaat ttcctattaa atggacagca ccagagagtc
     1621 ttgcctacaa taccttctca attaaatctg acgtctgggc ttttggggtg ctcttgtggg
     1681 aaattgctac atatggaatg tcaccatatc caggtattga cctgtctcag gtctatgatc
     1741 tactggaaaa aggatatcga atggaacagc ctgaaggatg tccccctaag gtgtatgaac
     1801 ttatgagagc atgctggaag tggagccctg ccgacaggcc ctcttttgct gaaacacatc
     1861 aagcttttga aaccatgttc catgactcca gcatttctga agaggtagcc gaggagcttg
     1921 ggagagctgc ctcctcctca tctgttgttc catatctgcc ccgattacct atacttcctt
     1981 ctaagacccg gacgctgaag aaacaggggg agaacaagga gaatattgaa gggccacaag
     2041 atgccacaga aaattctgct tccagttcag caccaggctt cattagaagt gcacaggccc
     2101 ccagtgggtc cccagcactg cctcgaaagc aaagagacaa gtcccccagc agcctcttgg
     2161 aagatgccaa agagacatgc ttcaccagag ataggaaggg aggcttcttc agttccttca
     2221 tgaaaaagag aaatgctccc acacccccca aacgcagcag ctccttccga gaaatggaga
     2281 atcagcccca caagaaatat gaactcacgg ggcttccaga gcaggatagg atggcaatga
     2341 cccttcccag gaactgccag aggtccaaac tccagctgga aaggacagtg tccacctctt
     2401 ctcagccaga agagaatgtg gatagggcca atgacatgct tcccaaaaaa tcagaggaag
     2461 gtgccgctcc gaccagggag agaccaaaag ccaaactttt gcccagagga gccaccgctc
     2521 ttcctctcag aaccccctct ggggatccag ccattacaga gaaggactct ccagggctgg
     2581 gagtggctgg agtggcagct gcccccaaga gcagagagag gaatggtggg gcacgacttg
     2641 gcatggctgg agtcccagag gatggcgagc agacaggctg ggctgcccca gccaaggctg
     2701 cggcggtcct cccgaccact cacaaccaca aagtgccagt ccttatctca cccactctga
     2761 agcacactcc agctgacgtg cagcttattg gcacagactc tcaggggaat aagttcaagc
     2821 tcttgtctga gcatcaggtc acttcctctg gagacaagga ccgaccccgc cgggtaaaac
     2881 caaagtgtgc cccacccccg ccgccagggg tgagactact gcagcatccg gccgtgtgct
     2941 cagactccac ggaagagccc atgtcagaaa cacaggaggg agggaagaag gcggctccag
     3001 gggcagtgcc catcagtggg aaagctggga ggcctgtaat gcctccacct caagtgcctc
     3061 tgcccacatc ttccatctcg ccagcgaaaa tggccaatgg cacagcaggt actaaagtgg
     3121 ctctgagaaa aaccagacag gtggctgaga aaatctcagc tgacaaaatc agtaaggagg
     3181 ccctgctgga atgtgctgac ctactgtcca gtgcaatcac ggaacctgtg cccaacagcc
     3241 agctggtgga cactggacac cagctgctcg actactgctc aggctatgtg gactgcatcc
     3301 cccaaactcg caacaaattt gccttccgcg aggctgtgag caaactggaa ctcagcctgc
     3361 aggagctgca ggtgtcttct gcagctgctg gtgtgcccgg ggcaaaccct gtccttaaca
     3421 acttactgtc atgtgtacag gaaatcagtg atgtggtgca gaggtagcca ccgttagccg
     3481 ggtgggaaga tgcacacatt tctgagggga gaggaaaagg gacttgtttt cctgtgttct
     3541 cgtttcaaaa agtggaagac tgatacttga gtgtgtttct gtgaagtacc tcagatctct
     3601 gagttctcac gtttacaggt tcatctcaaa aataacaaaa agcaaaaacc ataggagagg
     3661 gaaaataggt gggggcaggg cagttgtgga ccggattgga agctgcactg ggacatcagg
     3721 gaacatgcat atgtcgtgcc gtgaagaacc aaatccagcc cgttcttacc tggagtgatg
     3781 tgagctggtt agggctgctc cagcagggcc gcagggactg tgcccagaca gtgcgttggc
     3841 tgtggcactc attctgcacc acacagaagg gaattgactt ggggccccag taggtactaa
     3901 tggtgattat gcttcaactc atctaactta ttgggtggga cagaagaaag ctgggaatgt
     3961 gccaagagaa gttttgttca aggctgttgg aagctactgt tagcctcact tccacaggtc
     4021 actgctgcag taagaactgc agatcagatg gctagatgca acactgggaa atgtggttct
     4081 gtcagtatgc ttctgtcctg ttttccattg gtgtattaat tggtacagga ggtaaagaat
     4141 gctaggaagt atatttaggg agattgaaac ctcctaaaat cttacattac ttagcagaag
     4201 ccacttctcc caggctaata tgttgtttcc aaatggatca ggattggctt tctgcttgtt
     4261 ggtgcctatc ttgtgaacca taggcatagg agtctctttg gtaattttct tctccccctt
     4321 gctgggcagg ctgtcttcct ttattcctgg cagcattcag ggcattaacc accactgaac
     4381 attattgaaa acaatggtca tgtacaggtc tcacagggga atccttttct gttacagtgc
     4441 ccctgcatac tgacataccg gcaaaggact tgagcagctg tatgtttctt tatcaactaa
     4501 aatgccaggg aaagggtgtc tttttgaaat ccggtggtca gcctagaggt ctgtgactga
     4561 gtggagaagc tggcttggtc ctaatggctg tttcccctcc ctcccttatc accttagacc
     4621 caatctaggt ggagaatagg gagaagcatt ctctcactct acagtttcaa atgaatcacc
     4681 ctaaattatt ctcacatgtt tttctcctct cacatactcc ccctgccaat tgttgtgctt
     4741 gtttgtgaag atcatattgg gaatattctt tgatatttat tttatcattt cacctctatt
     4801 ttaagaatgc atagttgaag gagcaagtta ttttcggggg acaccaatta gatcccagaa
     4861 acctaatgat tccttttcct tccctattca gttattgtta tggaagttaa ttaggatcgc
     4921 ttcttaattt agaaccaagt ctaattggtt agatattatt aatactttcg acatcaggtc
     4981 taattccagt gaccacttca ttctcttctt aaaactttat gccctctcca ttcctgcctc
     5041 caaggagaac gcaatattaa aaaaaataca ttattttttc ctcccaaagg aatattaact
     5101 taggaagata ggaattcaac attgatgaac agtgagtttt cttcctggct ctgtcatcga
     5161 tccactgtca ggccatagcc ccgtctctta atctattaaa tcaacattga tgaacagtga
     5221 gttttcttcc tggctctgtc atcgatccac tgtcaggcca tagccccgtc tcttaatcta
     5281 ttaaatggag gtaatgatac atgttatcaa gggtgttttg caaataagtg tatagttatc
     5341 cctttgagag cctctctgga aagctcttca gtgcagtatt gttatatatg aatacaactt
     5401 tttcattctc ttctttgctc agcagcagat aatgaaattt aaaactgctg agattatact
     5461 aattgggcta gaatactaag gggggaaaag cattttggat agagtttggc atctttgacc
     5521 aaggaggaaa tttagttttc attagaaaga aaggaactga ttcttaccgc gggtgttcca
     5581 gaggagtccc aggccaagag aaggataaga agggaggaga caataccggg cattcctttc
     5641 aggagttggg tgatccctgt ctgtctgtta cctacaggtg gagcacaggc aactagtgat
     5701 ctggctaatc tccttgtaat ggttggaaga gttcccttta acttggattt aaaaaccaac
     5761 agtcctacta ccttcttctt tgccactctc cttcatcata tatttccata aacttgaaat
     5821 cgttttagca attagccttt taagggtggg gcagggaaag ctaaaacttt ggaatattgt
     5881 tatgctgctt tttaagttta tccctgtcat tgtggatgca acttgaggga ttctaattgt
     5941 ttttcagggg attttttttt tttttttttt aaagcaaggg atctttcctt gagtgctctg
     6001 aaaataagcc ttggaggaac actactgagt gtatttaagc tccctggttt tctcatcgaa
     6061 gaacagtctt tgagggtggg ggctgggtct ttctcaggtg ccgcacctgg ctctgcctcg
     6121 tccgcagtag gtgctcagta agttcatgaa tagaatggat ttttttctca tcactgtcaa
     6181 gagtagcatt gactgttgta gcacacccag ccacgtgatg ctttaactgt gtaacttcag
     6241 gagttgaggg ctcagggttc aggttaaaga ggcactgtca acttactata aaagtgtaac
     6301 ttaggttttt tccattatct acttgaaaag gaccagattt tttaaataac cataggtaaa
     6361 tttaaaagtt tgaattcaaa gcagagaaaa ctgcttttag aaactaaaaa tgtagtttaa
     6421 ttctatctag tttgaaaaca aagcagatag caaaagccct tctacaaggt gttgaaaact
     6481 ttctaaagtg cttgtacgta ttgtatacct ttcgggttac cacaccttca gtcttttcat
     6541 gcacagataa tatgatttca gtttagattt actaccttaa aatgcagtgt ttagaatgca
     6601 tcttgattgt gctttacgtg aagtattttc ttaaaaggct ttgtgtaaaa atgtgtatat
     6661 tttcctacag atctccatca tgattttcag agatatagcc ttaaaaaaaa ttggccctga
     6721 gaaatttatt cagtgtttct ccagatgaca ttgaggttct tatagtggag accctttctc
     6781 agctgaatta tggggtttaa gttagaattt tcttaaaatt cagttgcaag ttagctagta
     6841 aaatagtgcc cagttaataa aatgctgact ttcctaaggc accacccata tttatttaac
     6901 aaaatcatgg agattttgag cttcaaggat acagtttaga tagtggttaa gagtttagac
     6961 tctaaagcta gtctagaagg caagtcactt aactttcctg ggccttagtt tcctcattgg
     7021 aaaacaggga taataatagt aactacctca gggttgttgt aaggattaaa tgagataatg
     7081 tgtgtaggat agttagcttg agtgcctggc atgtaatgag tactccataa atgttaacta
     7141 ctactactat tattattaac gcttattcca gtgagtctta gccaaggacg tgcaacaaaa
     7201 tttcctgggg tttaaaaaaa gaaaaacaac aaaaaacctg atgcgtcggc cttaccccag
     7261 atcaagaatt ccccgtgggg ttgggtctca gccagtgtgt tttccaagaa tctctccagg
     7321 tgtttcagac acccagcact gtgtgaacac tagcaatacc ccaactcttt tgtttttttt
     7381 acagcttaag aaattggaag agaggatggt taagttactt gcccatattc tcagagcagt
     7441 taattagtgg cagagccaag gctagagttg ggtcttattc actttctcat tgtggggtct
     7501 ttccaccatt cctgttgcct tgtgagacac tg
//
LOCUS       XM_032604282            7493 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ABL proto-oncogene 2, non-receptor
            tyrosine kinase (ABL2), transcript variant X5, mRNA.
ACCESSION   XM_032604282
VERSION     XM_032604282.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7493
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7493
                     /gene="ABL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739683"
     CDS             276..3428
                     /gene="ABL2"
                     /codon_start=1
                     /product="tyrosine-protein kinase ABL2 isoform X5"
                     /protein_id="XP_032460173.1"
                     /db_xref="GeneID:116739683"
                     /translation="MGQQVGRVGEAPGLQQSQPRGIRGSSAARPSSRRRDLAGRTAEA
                     GFNIFTQHEALHRPYGCDVEPQALNEAIRWSSKENLLGATESDPNLFVALYDFVASGD
                     NTLSITKGEKLRVLGYNQNGEWSEVRSKNGQGWVPSNYITPVNSLEKHSWYHGPVSRS
                     AAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTTDGKVYVTAESRFS
                     TLAELVHHHSTVADGLVTTLHYPAPKCNKPTVYGVSPIHDKWEMERTDITMKHKLGGG
                     QYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEP
                     PFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLAAR
                     NCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAF
                     GVLLWEIATYGMSPYPGIDLSQVYDLLEKGYRMEQPEGCPPKVYELMRACWKWSPADR
                     PSFAETHQAFETMFHDSSISEEVAEELGRAASSSSVVPYLPRLPILPSKTRTLKKQGE
                     NKENIEGPQDATENSASSSAPGFIRSAQAPSGSPALPRKQRDKSPSSLLEDAKETCFT
                     RDRKGGFFSSFMKKRNAPTPPKRSSSFREMENQPHKKYELTGLPEQDRMAMTLPRNCQ
                     RSKLQLERTVSTSSQPEENVDRANDMLPKKSEEGAAPTRERPKAKLLPRGATALPLRT
                     PSGDPAITEKDSPGLGVAGVAAAPKSRERNGGARLGMAGVPEDGEQTGWAAPAKAAAV
                     LPTTHNHKVPVLISPTLKHTPADVQLIGTDSQGNKFKLLSEHQVTSSGDKDRPRRVKP
                     KCAPPPPPGVRLLQHPAVCSDSTEEPMSETQEGGKKAAPGAVPISGKAGRPVMPPPQV
                     PLPTSSISPAKMANGTAGTKVALRKTRQVAEKISADKISKEALLECADLLSSAITEPV
                     PNSQLVDTGHQLLDYCSGYVDCIPQTRNKFAFREAVSKLELSLQELQVSSAAAGVPGA
                     NPVLNNLLSCVQEISDVVQR"
     misc_feature    543..704
                     /gene="ABL2"
                     /note="Src homology 3 domain of the Protein Tyrosine
                     Kinase, Abelson kinase; Region: SH3_Abl; cd11850"
                     /db_xref="CDD:212784"
     misc_feature    order(558..560,564..566,573..581,585..587,630..632,
                     642..647,678..680,684..686,690..695)
                     /gene="ABL2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212784"
     misc_feature    order(570..581,636..638,642..644)
                     /gene="ABL2"
                     /note="PTKc domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212784"
     misc_feature    717..998
                     /gene="ABL2"
                     /note="Src homology 2 (SH2) domain found in Abelson murine
                     lymphosarcoma virus (ABL) proteins; Region: SH2_ABL;
                     cd09935"
                     /db_xref="CDD:198189"
     misc_feature    order(750..752,834..836,873..875)
                     /gene="ABL2"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198189"
     misc_feature    1053..1841
                     /gene="ABL2"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Abelson kinase; Region: PTKc_Abl; cd05052"
                     /db_xref="CDD:270645"
     misc_feature    order(1092..1094,1098..1106,1155..1157,1161..1163,
                     1296..1298,1302..1304,1314..1316,1458..1460,1491..1493,
                     1545..1553,1557..1559,1581..1583,1683..1685,1695..1697)
                     /gene="ABL2"
                     /note="active site"
                     /db_xref="CDD:270645"
     misc_feature    order(1092..1094,1098..1100,1107..1109,1155..1157,
                     1161..1163,1206..1208,1218..1220,1245..1247,1293..1298,
                     1302..1304,1314..1316,1458..1460,1488..1493)
                     /gene="ABL2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1137..1142,1230..1238,1248..1250,1374..1376,
                     1470..1475,1827..1832)
                     /gene="ABL2"
                     /note="SH3/SH2 domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1368..1373,1380..1382,1635..1637,1644..1649,
                     1734..1739)
                     /gene="ABL2"
                     /note="myristoyl binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:270645"
     misc_feature    1488..1562
                     /gene="ABL2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270645"
     misc_feature    order(1545..1553,1557..1559,1581..1583,1683..1685,
                     1695..1697)
                     /gene="ABL2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270645"
     misc_feature    3066..3425
                     /gene="ABL2"
                     /note="F-actin binding domain (FABD); Region: FABD;
                     smart00808"
                     /db_xref="CDD:197885"
ORIGIN      
        1 gctcggtggt ttaaagatgg cggcggcggc ggcggcagcg ttaagggcgc ggagccgcgg
       61 aatggggagg gaaaaggaga atctgtgagg cgtcgagagg cagcgcggcg gctgctgtga
      121 ggagtcgggt ggggagacgc cggtggccgg accgctcagg gccggggcct cgagtgggaa
      181 ggagaggccg gagcaagcgc ctggagcccg aggccggagc cgaggaggaa tgtgaccacg
      241 ggtcggcggg ggcgcgggag tacgcaagtg cagggatggg gcagcaggtg ggccgcgtcg
      301 gggaggctcc ggggcttcag cagtcgcaac cccgcgggat ccggggcagc agcgcagcca
      361 ggccctccag ccgcaggcgg gacctggcgg ggcgcaccgc agaggccggc ttcaatatct
      421 tcacccagca cgaagccttg caccgcccct atggttgtga tgttgaaccc caggccctga
      481 atgaagccat caggtggagc tccaaggaga acttgcttgg agccactgag agtgacccta
      541 atctcttcgt tgcactttat gatttcgtag caagtggtga taacacactg agtatcacta
      601 aaggtgaaaa gctacgagtc cttggttaca accagaatgg tgagtggagt gaagttcgct
      661 ctaagaatgg ccaaggctgg gtgccaagca actacatcac cccagtaaac agcctggaga
      721 aacactcctg gtaccatgga cctgtgtctc gcagtgcagc agagtatcta ctcagcagtc
      781 taatcaatgg cagcttcctg gtgcgagaaa gtgagagcag ccctgggcag ctgtcaatct
      841 cgctcaggta tgaggggcgt gtgtatcact acaggatcaa taccaccaca gatggcaagg
      901 tttatgtaac tgctgagagc cgctttagca ccttggccga gcttgttcac catcactcca
      961 cagtggctga tggactggta acaacactac actacccagc acccaagtgt aataagccta
     1021 cagtctacgg tgtgtcccct atccatgaca aatgggaaat ggaacgaaca gatattacca
     1081 tgaagcacaa acttgggggt ggtcagtatg gagaggttta cgttggcgtc tggaagaaat
     1141 atagccttac ggttgctgtg aaaacattga aggaagatac tatggaggtg gaggaattcc
     1201 taaaagaagc tgcagtgatg aaggaaatca agcatcctaa tctggtacaa ctactaggtg
     1261 tatgtacttt ggagccacca ttttacattg tgactgaata catgccttat gggaacttgc
     1321 ttgattatct ccgagaatgc aaccgagaag aggtgactgc agttgtactc ctttacatgg
     1381 ccactcagat ctcttctgca atggagtatt tagagaagaa gaatttcatc catagagatc
     1441 ttgcagctcg taactgcctg gtgggagaaa accatgtggt aaaagtggct gactttggct
     1501 tgagtagatt gatgactgga gacacctata ctgctcatgc tggagccaaa tttcctatta
     1561 aatggacagc accagagagt cttgcctaca ataccttctc aattaaatct gacgtctggg
     1621 cttttggggt gctcttgtgg gaaattgcta catatggaat gtcaccatat ccaggtattg
     1681 acctgtctca ggtctatgat ctactggaaa aaggatatcg aatggaacag cctgaaggat
     1741 gtccccctaa ggtgtatgaa cttatgagag catgctggaa gtggagccct gccgacaggc
     1801 cctcttttgc tgaaacacat caagcttttg aaaccatgtt ccatgactcc agcatttctg
     1861 aagaggtagc cgaggagctt gggagagctg cctcctcctc atctgttgtt ccatatctgc
     1921 cccgattacc tatacttcct tctaagaccc ggacgctgaa gaaacagggg gagaacaagg
     1981 agaatattga agggccacaa gatgccacag aaaattctgc ttccagttca gcaccaggct
     2041 tcattagaag tgcacaggcc cccagtgggt ccccagcact gcctcgaaag caaagagaca
     2101 agtcccccag cagcctcttg gaagatgcca aagagacatg cttcaccaga gataggaagg
     2161 gaggcttctt cagttccttc atgaaaaaga gaaatgctcc cacacccccc aaacgcagca
     2221 gctccttccg agaaatggag aatcagcccc acaagaaata tgaactcacg gggcttccag
     2281 agcaggatag gatggcaatg acccttccca ggaactgcca gaggtccaaa ctccagctgg
     2341 aaaggacagt gtccacctct tctcagccag aagagaatgt ggatagggcc aatgacatgc
     2401 ttcccaaaaa atcagaggaa ggtgccgctc cgaccaggga gagaccaaaa gccaaacttt
     2461 tgcccagagg agccaccgct cttcctctca gaaccccctc tggggatcca gccattacag
     2521 agaaggactc tccagggctg ggagtggctg gagtggcagc tgcccccaag agcagagaga
     2581 ggaatggtgg ggcacgactt ggcatggctg gagtcccaga ggatggcgag cagacaggct
     2641 gggctgcccc agccaaggct gcggcggtcc tcccgaccac tcacaaccac aaagtgccag
     2701 tccttatctc acccactctg aagcacactc cagctgacgt gcagcttatt ggcacagact
     2761 ctcaggggaa taagttcaag ctcttgtctg agcatcaggt cacttcctct ggagacaagg
     2821 accgaccccg ccgggtaaaa ccaaagtgtg ccccaccccc gccgccaggg gtgagactac
     2881 tgcagcatcc ggccgtgtgc tcagactcca cggaagagcc catgtcagaa acacaggagg
     2941 gagggaagaa ggcggctcca ggggcagtgc ccatcagtgg gaaagctggg aggcctgtaa
     3001 tgcctccacc tcaagtgcct ctgcccacat cttccatctc gccagcgaaa atggccaatg
     3061 gcacagcagg tactaaagtg gctctgagaa aaaccagaca ggtggctgag aaaatctcag
     3121 ctgacaaaat cagtaaggag gccctgctgg aatgtgctga cctactgtcc agtgcaatca
     3181 cggaacctgt gcccaacagc cagctggtgg acactggaca ccagctgctc gactactgct
     3241 caggctatgt ggactgcatc ccccaaactc gcaacaaatt tgccttccgc gaggctgtga
     3301 gcaaactgga actcagcctg caggagctgc aggtgtcttc tgcagctgct ggtgtgcccg
     3361 gggcaaaccc tgtccttaac aacttactgt catgtgtaca ggaaatcagt gatgtggtgc
     3421 agaggtagcc accgttagcc gggtgggaag atgcacacat ttctgagggg agaggaaaag
     3481 ggacttgttt tcctgtgttc tcgtttcaaa aagtggaaga ctgatacttg agtgtgtttc
     3541 tgtgaagtac ctcagatctc tgagttctca cgtttacagg ttcatctcaa aaataacaaa
     3601 aagcaaaaac cataggagag ggaaaatagg tgggggcagg gcagttgtgg accggattgg
     3661 aagctgcact gggacatcag ggaacatgca tatgtcgtgc cgtgaagaac caaatccagc
     3721 ccgttcttac ctggagtgat gtgagctggt tagggctgct ccagcagggc cgcagggact
     3781 gtgcccagac agtgcgttgg ctgtggcact cattctgcac cacacagaag ggaattgact
     3841 tggggcccca gtaggtacta atggtgatta tgcttcaact catctaactt attgggtggg
     3901 acagaagaaa gctgggaatg tgccaagaga agttttgttc aaggctgttg gaagctactg
     3961 ttagcctcac ttccacaggt cactgctgca gtaagaactg cagatcagat ggctagatgc
     4021 aacactggga aatgtggttc tgtcagtatg cttctgtcct gttttccatt ggtgtattaa
     4081 ttggtacagg aggtaaagaa tgctaggaag tatatttagg gagattgaaa cctcctaaaa
     4141 tcttacatta cttagcagaa gccacttctc ccaggctaat atgttgtttc caaatggatc
     4201 aggattggct ttctgcttgt tggtgcctat cttgtgaacc ataggcatag gagtctcttt
     4261 ggtaattttc ttctccccct tgctgggcag gctgtcttcc tttattcctg gcagcattca
     4321 gggcattaac caccactgaa cattattgaa aacaatggtc atgtacaggt ctcacagggg
     4381 aatccttttc tgttacagtg cccctgcata ctgacatacc ggcaaaggac ttgagcagct
     4441 gtatgtttct ttatcaacta aaatgccagg gaaagggtgt ctttttgaaa tccggtggtc
     4501 agcctagagg tctgtgactg agtggagaag ctggcttggt cctaatggct gtttcccctc
     4561 cctcccttat caccttagac ccaatctagg tggagaatag ggagaagcat tctctcactc
     4621 tacagtttca aatgaatcac cctaaattat tctcacatgt ttttctcctc tcacatactc
     4681 cccctgccaa ttgttgtgct tgtttgtgaa gatcatattg ggaatattct ttgatattta
     4741 ttttatcatt tcacctctat tttaagaatg catagttgaa ggagcaagtt attttcgggg
     4801 gacaccaatt agatcccaga aacctaatga ttccttttcc ttccctattc agttattgtt
     4861 atggaagtta attaggatcg cttcttaatt tagaaccaag tctaattggt tagatattat
     4921 taatactttc gacatcaggt ctaattccag tgaccacttc attctcttct taaaacttta
     4981 tgccctctcc attcctgcct ccaaggagaa cgcaatatta aaaaaaatac attatttttt
     5041 cctcccaaag gaatattaac ttaggaagat aggaattcaa cattgatgaa cagtgagttt
     5101 tcttcctggc tctgtcatcg atccactgtc aggccatagc cccgtctctt aatctattaa
     5161 atcaacattg atgaacagtg agttttcttc ctggctctgt catcgatcca ctgtcaggcc
     5221 atagccccgt ctcttaatct attaaatgga ggtaatgata catgttatca agggtgtttt
     5281 gcaaataagt gtatagttat ccctttgaga gcctctctgg aaagctcttc agtgcagtat
     5341 tgttatatat gaatacaact ttttcattct cttctttgct cagcagcaga taatgaaatt
     5401 taaaactgct gagattatac taattgggct agaatactaa ggggggaaaa gcattttgga
     5461 tagagtttgg catctttgac caaggaggaa atttagtttt cattagaaag aaaggaactg
     5521 attcttaccg cgggtgttcc agaggagtcc caggccaaga gaaggataag aagggaggag
     5581 acaataccgg gcattccttt caggagttgg gtgatccctg tctgtctgtt acctacaggt
     5641 ggagcacagg caactagtga tctggctaat ctccttgtaa tggttggaag agttcccttt
     5701 aacttggatt taaaaaccaa cagtcctact accttcttct ttgccactct ccttcatcat
     5761 atatttccat aaacttgaaa tcgttttagc aattagcctt ttaagggtgg ggcagggaaa
     5821 gctaaaactt tggaatattg ttatgctgct ttttaagttt atccctgtca ttgtggatgc
     5881 aacttgaggg attctaattg tttttcaggg gatttttttt tttttttttt taaagcaagg
     5941 gatctttcct tgagtgctct gaaaataagc cttggaggaa cactactgag tgtatttaag
     6001 ctccctggtt ttctcatcga agaacagtct ttgagggtgg gggctgggtc tttctcaggt
     6061 gccgcacctg gctctgcctc gtccgcagta ggtgctcagt aagttcatga atagaatgga
     6121 tttttttctc atcactgtca agagtagcat tgactgttgt agcacaccca gccacgtgat
     6181 gctttaactg tgtaacttca ggagttgagg gctcagggtt caggttaaag aggcactgtc
     6241 aacttactat aaaagtgtaa cttaggtttt ttccattatc tacttgaaaa ggaccagatt
     6301 ttttaaataa ccataggtaa atttaaaagt ttgaattcaa agcagagaaa actgctttta
     6361 gaaactaaaa atgtagttta attctatcta gtttgaaaac aaagcagata gcaaaagccc
     6421 ttctacaagg tgttgaaaac tttctaaagt gcttgtacgt attgtatacc tttcgggtta
     6481 ccacaccttc agtcttttca tgcacagata atatgatttc agtttagatt tactacctta
     6541 aaatgcagtg tttagaatgc atcttgattg tgctttacgt gaagtatttt cttaaaaggc
     6601 tttgtgtaaa aatgtgtata ttttcctaca gatctccatc atgattttca gagatatagc
     6661 cttaaaaaaa attggccctg agaaatttat tcagtgtttc tccagatgac attgaggttc
     6721 ttatagtgga gaccctttct cagctgaatt atggggttta agttagaatt ttcttaaaat
     6781 tcagttgcaa gttagctagt aaaatagtgc ccagttaata aaatgctgac tttcctaagg
     6841 caccacccat atttatttaa caaaatcatg gagattttga gcttcaagga tacagtttag
     6901 atagtggtta agagtttaga ctctaaagct agtctagaag gcaagtcact taactttcct
     6961 gggccttagt ttcctcattg gaaaacaggg ataataatag taactacctc agggttgttg
     7021 taaggattaa atgagataat gtgtgtagga tagttagctt gagtgcctgg catgtaatga
     7081 gtactccata aatgttaact actactacta ttattattaa cgcttattcc agtgagtctt
     7141 agccaaggac gtgcaacaaa atttcctggg gtttaaaaaa agaaaaacaa caaaaaacct
     7201 gatgcgtcgg ccttacccca gatcaagaat tccccgtggg gttgggtctc agccagtgtg
     7261 ttttccaaga atctctccag gtgtttcaga cacccagcac tgtgtgaaca ctagcaatac
     7321 cccaactctt ttgttttttt tacagcttaa gaaattggaa gagaggatgg ttaagttact
     7381 tgcccatatt ctcagagcag ttaattagtg gcagagccaa ggctagagtt gggtcttatt
     7441 cactttctca ttgtggggtc tttccaccat tcctgttgcc ttgtgagaca ctg
//
LOCUS       XM_032604295            5512 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAM20B glycosaminoglycan xylosylkinase
            (FAM20B), transcript variant X1, mRNA.
ACCESSION   XM_032604295
VERSION     XM_032604295.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5512
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5512
                     /gene="FAM20B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739698"
     CDS             271..1500
                     /gene="FAM20B"
                     /codon_start=1
                     /product="glycosaminoglycan xylosylkinase isoform X1"
                     /protein_id="XP_032460186.1"
                     /db_xref="GeneID:116739698"
                     /translation="MKLKQRVVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRM
                     MAGLRVELVSKLDHTLQSPWEIASQWVVPREVYPEETPELGAIMHAMATKKIIKADVG
                     YKGTQLKALLILEGGQKVVFKPKRYNRDYVVEGEPYAGYDRHNAEVAAFHLDRILGFR
                     RAPLVVGRFVNLRTEIKPVATEQLLSTFLTVGNNTCFYGKCYYCRETEPACADGDTME
                     GSVTLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDII
                     DTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCII
                     RVSTWNRLNSLKNGVLKSALRSAMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQ
                     FGMDAVLVEDRMPLSHL"
     misc_feature    832..1452
                     /gene="FAM20B"
                     /note="C-terminal putative kinase domain of FAM20B xylose
                     kinase; Region: FAM20B_C; cd10470"
                     /db_xref="CDD:198461"
     misc_feature    order(1114..1116,1135..1137,1195..1197)
                     /gene="FAM20B"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:198461"
     misc_feature    1126..1152
                     /gene="FAM20B"
                     /note="putative catalytic loop [active]"
                     /db_xref="CDD:198461"
     misc_feature    order(1150..1152,1195..1197)
                     /gene="FAM20B"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:198461"
     misc_feature    1195..1263
                     /gene="FAM20B"
                     /note="putative activation loop; other site"
                     /db_xref="CDD:198461"
ORIGIN      
        1 gtgtgggcgg gagccgcagt agcggcggct gggggcggtg agcgcggcgt ggggctgccc
       61 cttcccggag gtggcggggg cggccggggc cgcaccgcac cgcgcgggcg gccatggagc
      121 gagcctaggg cgccgcagga attgtgggag gcacctcagt gaagaaatgg accagtgtgt
      181 ataatcatgg aatctccttg ctgacaatca ccacctgctc tccttgataa gtgagagaga
      241 gtagtcaggg gagaaggaaa agaggtcaac atgaagctaa agcagcgagt cgtgctgtta
      301 gcaattctcc ttgtcatctt tatcttcacc aaagttttcc tgattgacaa cttagataca
      361 tcagctgcca accgggagga ccagagggcc tttcaccgaa tgatggctgg cttgcgggta
      421 gagctggtgt ccaagctgga ccacaccttg cagtctccct gggagattgc atcccagtgg
      481 gtggttcccc gggaagtgta ccctgaagag acaccagagc tgggggcaat catgcatgcc
      541 atggccacca agaaaatcat taaagctgat gtaggttata aagggacaca actgaaagcc
      601 ttactgatac ttgaaggagg acagaaagtt gtcttcaaac ctaagcggta taaccgagac
      661 tatgtggtag aaggggaacc ttatgctggt tatgatagac acaatgcaga ggtagcagcc
      721 tttcatttgg acaggattct gggtttccgc cgagccccct tggtggttgg cagatttgtt
      781 aatctgcgga cagagatcaa gcctgttgcc acggagcagc tcttgagcac cttcctaact
      841 gtaggaaata atacttgttt ctatgggaag tgttattatt gccgagaaac agagccagcc
      901 tgtgctgatg gagacacgat ggaggggtct gtcacgcttt ggcttccaga tgtgtggcct
      961 ctacagaaac accgacaccc atggggcagg acttaccgag agggcaaatt agccaggtgg
     1021 gagtatgatg agagctactg tgacgctgtg aagaaaacgt ccccttatga ctccggccct
     1081 cgcctcttgg acatcattga tacagctgtc tttgattacc tgattggcaa tgctgaccgc
     1141 catcactacg agagttttca agacgatgaa ggcgctagta tgctcattct tctcgataat
     1201 gccaaaagct ttgggaaccc ctcgctggat gagagaagca ttcttgcccc tctctatcag
     1261 tgttgcatca ttcgggtttc tacctggaac agactgaact ccctgaagaa tggtgtgctg
     1321 aagtctgcct taagatctgc catggcccat gaccccatct ccccagtgct ctctgatcct
     1381 cacctagatg ctgtggacca gcggctcctg agtgtcctgg ccaccgtgaa gcagtgcact
     1441 gaccagtttg ggatggacgc agtgctggtg gaagacagga tgcctctctc ccacttgtaa
     1501 ttctccacaa aataagtgaa acttcttttt acaaagatag agaaacagca caatcaattc
     1561 cgaatggtat gaggtggatt ggaaatggcc agcagcacat tctggtgata ggggacaggg
     1621 tggccttggt gtttgctgta gtagaagttg aagcaaaggc tacaagtttc agaccacgga
     1681 gctgtacctg ctgaaccacc ttctgacttc ctcggcatat gcccattcta gcagtgggtg
     1741 tcacagttgg tcagtattaa ttctcatgcc aaaggacaaa ttagaggtgt gacatttgaa
     1801 tagattaatg ttggggttgg ttctggagta tgtgttttga gtccatcctt ataatccttt
     1861 ctccacactt gtggattttc cgaaaacact ttgtaatctc ttgagtcctt tcttaccagg
     1921 actagtcaaa ttggaaattt tactgcttcc taaggagtgg cagcaagtaa cccagcgttc
     1981 tgttgagcca aagtagcatg ctctgttgga gggactatgt tttgaagata gaattagagg
     2041 aaagacaaaa gcaagaaaga tgtttgggct tttaactgag taggtggtgc ttttgatgat
     2101 tcttaaagga gggaagaaga gagagagacc tacttggtag aaccagaatc aaggcggtga
     2161 tcgaattagt gaaaaacagg ttcccctgta tttaagttct taacgtatat aaaagcaagc
     2221 atgacttgta cctaagtaag atttgcattc tcataattgt gtccaaatta atccaaaaaa
     2281 gtgtccctgg agaacctacc attacaaccc aagcacaatt ctgtcatgga gacttttttt
     2341 ccttttgccc agagcaggca aatcctttgc aaattatcaa agcaaactga aataacagct
     2401 tgaataagag ttaggttgcc tgtcttctct gccatcctga tttctaaaat gaatttccac
     2461 ttctgtcttc aaggcatttg gtcattaaag cggctgttcc caagagattg gcgatcctac
     2521 ttgtgccttt cttgtgagga aagccagctc gctcctacgg ataatatagt ttagatcctg
     2581 ctggtggctg gacctatctt gtgatttggg ccatgtggaa ggctggaaac aaagatttta
     2641 agccttctga gccttaaaat taaggtggtt accaggaaga gccttaagat tttgatttat
     2701 gtcaaaccct gatttcatca tttaatcttg tttggagttc tgaacccacg atgtagtatt
     2761 gtccttccgt ctcctattag cactttcaaa tttcaagttg ctaaaacagg cttagttctg
     2821 tgttctgcca aagcaatttg acatataagc acttgcatta aaatacaggg cagaggaaac
     2881 taggcctggt gtgcccactc acgtgccctc agaggtgggt gcttctctcc tgcattttgt
     2941 ctggggactg ttgcggtttt gacttctgtg aagcagacac tgatatttaa acagtgtggt
     3001 taaacaaatt tactgccagc tattggagac cagttttacg tagccaccct ttcaaaaaca
     3061 gtttagaatt tatgccccaa ttttctcaaa ttgaaagata actgagtacc ccaaaactac
     3121 tttaaagtaa catgaccggg cttccctggt ggcgcagtgg ttgagagtcc gcctgctgat
     3181 gcaggggata cgggttcgtg ccccggtccg ggaagatccc acatgccgcg gagcggctgg
     3241 gcccatgagc catggccact gagcctgtgc gtccagagct gtgctccaca atgggagagg
     3301 ccacaacagt gagaggcccg cgtaccgcaa aaaaaaaaaa aaaaaaaaga caacacttaa
     3361 agtaacgtga aattaggacg cttttgtact ttagtatgta catttggcaa tgtacacaga
     3421 atgggctgag ttatttttaa aaaggtatta aatttaagaa gacaggtagt agcacaaaac
     3481 actgagctag tgttaacaaa aggaagcatt aactccaatt ttaaactcat ttactatgtg
     3541 catccaggga agttcacatt tgagcctgag aataccttgg atggtgctta cctcagagca
     3601 tcagggagcc agctggaggg acagtgggaa ggaagtcaat gctgctttcc ttggtaaatg
     3661 ttagctgaac taaatttctt gcaaacatgt gataccttca gtatgcccca gtgaagtgaa
     3721 taagagctgt tcccaaactg ggaacttcat tcatgatgtt gaaggcagaa gattctgcta
     3781 aggaaaaaag taggaggaaa agctactttg aaaaattcct cattcttttt cccaaacatt
     3841 gcagaaaatg tataatctca ttctctttcc ctattttaaa attcatgatc ttaaaaggtg
     3901 ttcaaatgta tagtggttaa agttagaatt atgctaatag agtggtgtga actgatgctt
     3961 agaatataaa tttatgttct aagtcaggat cggattaagc tgcaaaagta cgtttagaat
     4021 cttggaaaaa accaaccata agcttatagc cctaaaattc ataaacacta aattctgttt
     4081 caaaaaagag gtagatatct ttttttttaa gttttgtaac actgtcctct tgatggttta
     4141 tcttttagaa tcgaggacta ttataatcaa acgggggtca ttggaagggt ttttgatcag
     4201 tcctaacctg ggcttgccta gctaacatct aaaggtagat gtgggtacat tttaatatta
     4261 taaaactaag aaaatcagaa ctgagtacca tttcctacct cccttcttcc acttcttaaa
     4321 tattaggttg cccaaaaagt tcattctggc tttccacacc atcttacaaa aagcctgaat
     4381 gaactttttg gccaacccaa tatatttatt ccatagtttg ggtgaatatg ggtatagagg
     4441 tttcattcaa gaattgtcat ttaatatgaa gctgtatttt gggttttggg ggtaaataat
     4501 tttctgtgca aaacattaat aggatctgat ttactcagag tattgctcaa taatttatta
     4561 ataaggcatt tctccctatt tgcactcagg attaatatgt caaatgaaat ctaataagga
     4621 aatgggagaa ttcaggtaca tcctattatt ttgggaaaga tgaatcctat acatggcaga
     4681 aattccatgt cacctgaagg caacatgttc ttccaaagaa atccatcttt tcctttcttt
     4741 aaaaaaaaaa aaaggctttt ggccttcccc tcccatccac catgttcctt cactctccct
     4801 tctccacggc ttccgtattc ttgtttgacc attacctgac cacacctcaa atgatggtaa
     4861 acagcatcta tcagtgagct gtcttatgtg agtcgtcttg tgagcttggg cttcaggaaa
     4921 catgagtcaa ggtatatgta tatatatagt catatatgta ttctaacaag aaaaaatgta
     4981 tttattttga cacagggaaa cactgttgct gaagaacctg aagctaggaa aaggttctct
     5041 tagtctctga gagtgaatct aagtgacata aagatatcca ttcagcaaac acctcctgtg
     5101 ctagccaggg ccgacgcccg agggacatag accagcctcc tgagactgtt gtacagggga
     5161 aggccagctt tcccctttcg acgcctcaag tctgggttga aaaggtgagg gctggatact
     5221 ctactgccac agggttttaa ggaactaagg tgttactcac aaatacaaaa tgtctgtggg
     5281 ggaactggga ataacttact gggaagttaa tttatttgct tcaaagagag gtgtaggaac
     5341 cactaccctc tgttttgatc tgccaaggat ttcctctcag agctgttgca caaatagagg
     5401 ttgtgcttgg taagatacca aacaagacag atatgcacct aaatttctaa tgtgttctgt
     5461 gggtttcaat tctgaaagaa agaaaatgaa taaagatttt aataagtact ga
//
LOCUS       XM_032604304            6455 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAM20B glycosaminoglycan xylosylkinase
            (FAM20B), transcript variant X2, mRNA.
ACCESSION   XM_032604304
VERSION     XM_032604304.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6455
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6455
                     /gene="FAM20B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739698"
     CDS             1214..2443
                     /gene="FAM20B"
                     /codon_start=1
                     /product="glycosaminoglycan xylosylkinase isoform X1"
                     /protein_id="XP_032460195.1"
                     /db_xref="GeneID:116739698"
                     /translation="MKLKQRVVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRM
                     MAGLRVELVSKLDHTLQSPWEIASQWVVPREVYPEETPELGAIMHAMATKKIIKADVG
                     YKGTQLKALLILEGGQKVVFKPKRYNRDYVVEGEPYAGYDRHNAEVAAFHLDRILGFR
                     RAPLVVGRFVNLRTEIKPVATEQLLSTFLTVGNNTCFYGKCYYCRETEPACADGDTME
                     GSVTLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDII
                     DTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCII
                     RVSTWNRLNSLKNGVLKSALRSAMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQ
                     FGMDAVLVEDRMPLSHL"
     misc_feature    1775..2395
                     /gene="FAM20B"
                     /note="C-terminal putative kinase domain of FAM20B xylose
                     kinase; Region: FAM20B_C; cd10470"
                     /db_xref="CDD:198461"
     misc_feature    order(2057..2059,2078..2080,2138..2140)
                     /gene="FAM20B"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:198461"
     misc_feature    2069..2095
                     /gene="FAM20B"
                     /note="putative catalytic loop [active]"
                     /db_xref="CDD:198461"
     misc_feature    order(2093..2095,2138..2140)
                     /gene="FAM20B"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:198461"
     misc_feature    2138..2206
                     /gene="FAM20B"
                     /note="putative activation loop; other site"
                     /db_xref="CDD:198461"
ORIGIN      
        1 ctaaaggaaa acctctttct gaactgtcag tacttagaaa aagagactgt actctgaaac
       61 caccaactaa attgagtaga gtgttggtag agaattagat tcccaaaacc aggagagcta
      121 actaaggaca gccaacatta aggtgccagt taatacacac tcatttgata ccgaataccg
      181 aggaaattaa tagcagagtc ctaagatact tgcatagcct catttgcagt agtttgttca
      241 gtttaggtga ataatgcatg tacccttact atgctacgta ctgcagggag tgcaaaggta
      301 gttaagatca ctaaggagcc aggattctga gagggggatt gagaacgaca tacaagaaga
      361 cactggataa ggcagaatgt agttaagtac tggtctaaag atgagagagg ttagttacta
      421 tagagtgtaa ggagagacca gaaacggctt tgtagatggc ctttgaaagc ttaattaggc
      481 tttaaacagg agaagatggg aagaagagat aagagctaga ggaattttga gagagttcca
      541 gtgaggagtg acttagggga ccatgtttgt ggtggaagct gacaagtgat gagtgaagag
      601 aatgagagtg gtgcctggca atgtagattg gccgaagtca tttagggtag ggctttaatg
      661 ccttgctaag ggatttatag aactcaaaaa tggtgtgtga ttagaaatac gattttgctg
      721 cattatctag tctggattgg agaacctgga ggcccagagg cagttctttc agggatccag
      781 tagaaggtgc tgatcactaa atgaagtcga tggctgtggg catgacgggc agttgtagag
      841 aacagtgtca aattgcaatc ttacttgttt taccaggatg tggtgactaa tcacaaacaa
      901 gaaaacttgt tcagcccctt cgttaaacct gccctcacta ctaatctgca gaggtaaata
      961 gtgaagtgag gtaacagtcg aactcttcag ttcacttaat agaaatttct gtcctagttg
     1021 agtggatgaa ttatctgcag ccctgaactg atgaatgtgc tcttctgagg cccatcagaa
     1081 ggaattgtgg gaggcacctc agtgaagaaa tggaccagtg tgtataatca tggaatctcc
     1141 ttgctgacaa tcaccacctg ctctccttga taagtgagag agagtagtca ggggagaagg
     1201 aaaagaggtc aacatgaagc taaagcagcg agtcgtgctg ttagcaattc tccttgtcat
     1261 ctttatcttc accaaagttt tcctgattga caacttagat acatcagctg ccaaccggga
     1321 ggaccagagg gcctttcacc gaatgatggc tggcttgcgg gtagagctgg tgtccaagct
     1381 ggaccacacc ttgcagtctc cctgggagat tgcatcccag tgggtggttc cccgggaagt
     1441 gtaccctgaa gagacaccag agctgggggc aatcatgcat gccatggcca ccaagaaaat
     1501 cattaaagct gatgtaggtt ataaagggac acaactgaaa gccttactga tacttgaagg
     1561 aggacagaaa gttgtcttca aacctaagcg gtataaccga gactatgtgg tagaagggga
     1621 accttatgct ggttatgata gacacaatgc agaggtagca gcctttcatt tggacaggat
     1681 tctgggtttc cgccgagccc ccttggtggt tggcagattt gttaatctgc ggacagagat
     1741 caagcctgtt gccacggagc agctcttgag caccttccta actgtaggaa ataatacttg
     1801 tttctatggg aagtgttatt attgccgaga aacagagcca gcctgtgctg atggagacac
     1861 gatggagggg tctgtcacgc tttggcttcc agatgtgtgg cctctacaga aacaccgaca
     1921 cccatggggc aggacttacc gagagggcaa attagccagg tgggagtatg atgagagcta
     1981 ctgtgacgct gtgaagaaaa cgtcccctta tgactccggc cctcgcctct tggacatcat
     2041 tgatacagct gtctttgatt acctgattgg caatgctgac cgccatcact acgagagttt
     2101 tcaagacgat gaaggcgcta gtatgctcat tcttctcgat aatgccaaaa gctttgggaa
     2161 cccctcgctg gatgagagaa gcattcttgc ccctctctat cagtgttgca tcattcgggt
     2221 ttctacctgg aacagactga actccctgaa gaatggtgtg ctgaagtctg ccttaagatc
     2281 tgccatggcc catgacccca tctccccagt gctctctgat cctcacctag atgctgtgga
     2341 ccagcggctc ctgagtgtcc tggccaccgt gaagcagtgc actgaccagt ttgggatgga
     2401 cgcagtgctg gtggaagaca ggatgcctct ctcccacttg taattctcca caaaataagt
     2461 gaaacttctt tttacaaaga tagagaaaca gcacaatcaa ttccgaatgg tatgaggtgg
     2521 attggaaatg gccagcagca cattctggtg ataggggaca gggtggcctt ggtgtttgct
     2581 gtagtagaag ttgaagcaaa ggctacaagt ttcagaccac ggagctgtac ctgctgaacc
     2641 accttctgac ttcctcggca tatgcccatt ctagcagtgg gtgtcacagt tggtcagtat
     2701 taattctcat gccaaaggac aaattagagg tgtgacattt gaatagatta atgttggggt
     2761 tggttctgga gtatgtgttt tgagtccatc cttataatcc tttctccaca cttgtggatt
     2821 ttccgaaaac actttgtaat ctcttgagtc ctttcttacc aggactagtc aaattggaaa
     2881 ttttactgct tcctaaggag tggcagcaag taacccagcg ttctgttgag ccaaagtagc
     2941 atgctctgtt ggagggacta tgttttgaag atagaattag aggaaagaca aaagcaagaa
     3001 agatgtttgg gcttttaact gagtaggtgg tgcttttgat gattcttaaa ggagggaaga
     3061 agagagagag acctacttgg tagaaccaga atcaaggcgg tgatcgaatt agtgaaaaac
     3121 aggttcccct gtatttaagt tcttaacgta tataaaagca agcatgactt gtacctaagt
     3181 aagatttgca ttctcataat tgtgtccaaa ttaatccaaa aaagtgtccc tggagaacct
     3241 accattacaa cccaagcaca attctgtcat ggagactttt tttccttttg cccagagcag
     3301 gcaaatcctt tgcaaattat caaagcaaac tgaaataaca gcttgaataa gagttaggtt
     3361 gcctgtcttc tctgccatcc tgatttctaa aatgaatttc cacttctgtc ttcaaggcat
     3421 ttggtcatta aagcggctgt tcccaagaga ttggcgatcc tacttgtgcc tttcttgtga
     3481 ggaaagccag ctcgctccta cggataatat agtttagatc ctgctggtgg ctggacctat
     3541 cttgtgattt gggccatgtg gaaggctgga aacaaagatt ttaagccttc tgagccttaa
     3601 aattaaggtg gttaccagga agagccttaa gattttgatt tatgtcaaac cctgatttca
     3661 tcatttaatc ttgtttggag ttctgaaccc acgatgtagt attgtccttc cgtctcctat
     3721 tagcactttc aaatttcaag ttgctaaaac aggcttagtt ctgtgttctg ccaaagcaat
     3781 ttgacatata agcacttgca ttaaaataca gggcagagga aactaggcct ggtgtgccca
     3841 ctcacgtgcc ctcagaggtg ggtgcttctc tcctgcattt tgtctgggga ctgttgcggt
     3901 tttgacttct gtgaagcaga cactgatatt taaacagtgt ggttaaacaa atttactgcc
     3961 agctattgga gaccagtttt acgtagccac cctttcaaaa acagtttaga atttatgccc
     4021 caattttctc aaattgaaag ataactgagt accccaaaac tactttaaag taacatgacc
     4081 gggcttccct ggtggcgcag tggttgagag tccgcctgct gatgcagggg atacgggttc
     4141 gtgccccggt ccgggaagat cccacatgcc gcggagcggc tgggcccatg agccatggcc
     4201 actgagcctg tgcgtccaga gctgtgctcc acaatgggag aggccacaac agtgagaggc
     4261 ccgcgtaccg caaaaaaaaa aaaaaaaaaa agacaacact taaagtaacg tgaaattagg
     4321 acgcttttgt actttagtat gtacatttgg caatgtacac agaatgggct gagttatttt
     4381 taaaaaggta ttaaatttaa gaagacaggt agtagcacaa aacactgagc tagtgttaac
     4441 aaaaggaagc attaactcca attttaaact catttactat gtgcatccag ggaagttcac
     4501 atttgagcct gagaatacct tggatggtgc ttacctcaga gcatcaggga gccagctgga
     4561 gggacagtgg gaaggaagtc aatgctgctt tccttggtaa atgttagctg aactaaattt
     4621 cttgcaaaca tgtgatacct tcagtatgcc ccagtgaagt gaataagagc tgttcccaaa
     4681 ctgggaactt cattcatgat gttgaaggca gaagattctg ctaaggaaaa aagtaggagg
     4741 aaaagctact ttgaaaaatt cctcattctt tttcccaaac attgcagaaa atgtataatc
     4801 tcattctctt tccctatttt aaaattcatg atcttaaaag gtgttcaaat gtatagtggt
     4861 taaagttaga attatgctaa tagagtggtg tgaactgatg cttagaatat aaatttatgt
     4921 tctaagtcag gatcggatta agctgcaaaa gtacgtttag aatcttggaa aaaaccaacc
     4981 ataagcttat agccctaaaa ttcataaaca ctaaattctg tttcaaaaaa gaggtagata
     5041 tctttttttt taagttttgt aacactgtcc tcttgatggt ttatctttta gaatcgagga
     5101 ctattataat caaacggggg tcattggaag ggtttttgat cagtcctaac ctgggcttgc
     5161 ctagctaaca tctaaaggta gatgtgggta cattttaata ttataaaact aagaaaatca
     5221 gaactgagta ccatttccta cctcccttct tccacttctt aaatattagg ttgcccaaaa
     5281 agttcattct ggctttccac accatcttac aaaaagcctg aatgaacttt ttggccaacc
     5341 caatatattt attccatagt ttgggtgaat atgggtatag aggtttcatt caagaattgt
     5401 catttaatat gaagctgtat tttgggtttt gggggtaaat aattttctgt gcaaaacatt
     5461 aataggatct gatttactca gagtattgct caataattta ttaataaggc atttctccct
     5521 atttgcactc aggattaata tgtcaaatga aatctaataa ggaaatggga gaattcaggt
     5581 acatcctatt attttgggaa agatgaatcc tatacatggc agaaattcca tgtcacctga
     5641 aggcaacatg ttcttccaaa gaaatccatc ttttcctttc tttaaaaaaa aaaaaaggct
     5701 tttggccttc ccctcccatc caccatgttc cttcactctc ccttctccac ggcttccgta
     5761 ttcttgtttg accattacct gaccacacct caaatgatgg taaacagcat ctatcagtga
     5821 gctgtcttat gtgagtcgtc ttgtgagctt gggcttcagg aaacatgagt caaggtatat
     5881 gtatatatat agtcatatat gtattctaac aagaaaaaat gtatttattt tgacacaggg
     5941 aaacactgtt gctgaagaac ctgaagctag gaaaaggttc tcttagtctc tgagagtgaa
     6001 tctaagtgac ataaagatat ccattcagca aacacctcct gtgctagcca gggccgacgc
     6061 ccgagggaca tagaccagcc tcctgagact gttgtacagg ggaaggccag ctttcccctt
     6121 tcgacgcctc aagtctgggt tgaaaaggtg agggctggat actctactgc cacagggttt
     6181 taaggaacta aggtgttact cacaaataca aaatgtctgt gggggaactg ggaataactt
     6241 actgggaagt taatttattt gcttcaaaga gaggtgtagg aaccactacc ctctgttttg
     6301 atctgccaag gatttcctct cagagctgtt gcacaaatag aggttgtgct tggtaagata
     6361 ccaaacaaga cagatatgca cctaaatttc taatgtgttc tgtgggtttc aattctgaaa
     6421 gaaagaaaat gaataaagat tttaataagt actga
//
LOCUS       XM_032604316            5851 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAM20B glycosaminoglycan xylosylkinase
            (FAM20B), transcript variant X3, mRNA.
ACCESSION   XM_032604316
VERSION     XM_032604316.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5851
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5851
                     /gene="FAM20B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739698"
     CDS             610..1839
                     /gene="FAM20B"
                     /codon_start=1
                     /product="glycosaminoglycan xylosylkinase isoform X1"
                     /protein_id="XP_032460207.1"
                     /db_xref="GeneID:116739698"
                     /translation="MKLKQRVVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRM
                     MAGLRVELVSKLDHTLQSPWEIASQWVVPREVYPEETPELGAIMHAMATKKIIKADVG
                     YKGTQLKALLILEGGQKVVFKPKRYNRDYVVEGEPYAGYDRHNAEVAAFHLDRILGFR
                     RAPLVVGRFVNLRTEIKPVATEQLLSTFLTVGNNTCFYGKCYYCRETEPACADGDTME
                     GSVTLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDII
                     DTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCII
                     RVSTWNRLNSLKNGVLKSALRSAMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQ
                     FGMDAVLVEDRMPLSHL"
     misc_feature    1171..1791
                     /gene="FAM20B"
                     /note="C-terminal putative kinase domain of FAM20B xylose
                     kinase; Region: FAM20B_C; cd10470"
                     /db_xref="CDD:198461"
     misc_feature    order(1453..1455,1474..1476,1534..1536)
                     /gene="FAM20B"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:198461"
     misc_feature    1465..1491
                     /gene="FAM20B"
                     /note="putative catalytic loop [active]"
                     /db_xref="CDD:198461"
     misc_feature    order(1489..1491,1534..1536)
                     /gene="FAM20B"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:198461"
     misc_feature    1534..1602
                     /gene="FAM20B"
                     /note="putative activation loop; other site"
                     /db_xref="CDD:198461"
ORIGIN      
        1 tttgcactct gtataggtgc atttatgtcc ctgtagttcc ttctgtagaa aaaagaaaat
       61 gatacggaaa taccagtgtt ggttctcgtt tcagaaagca ttgccaacaa cacttgaaaa
      121 tttggttcca gccctgtctt gtatcattct tgggcaatgt tggaccatct ccaatcttcc
      181 tcttagcatt tccagatcat ctttactccc agtcccaacc aacaccagac accagcttgg
      241 caatagcagt tgccttgaaa gatggaagca aggatgtggt gactaatcac aaacaagaaa
      301 acttgttcag ccccttcgtt aaacctgccc tcactactaa tctgcagagg taaatagtga
      361 agtgaggtaa cagtcgaact cttcagttca cttaatagaa atttctgtcc tagttgagtg
      421 gatgaattat ctgcagccct gaactgatga atgtgctctt ctgaggccca tcagaaggaa
      481 ttgtgggagg cacctcagtg aagaaatgga ccagtgtgta taatcatgga atctccttgc
      541 tgacaatcac cacctgctct ccttgataag tgagagagag tagtcagggg agaaggaaaa
      601 gaggtcaaca tgaagctaaa gcagcgagtc gtgctgttag caattctcct tgtcatcttt
      661 atcttcacca aagttttcct gattgacaac ttagatacat cagctgccaa ccgggaggac
      721 cagagggcct ttcaccgaat gatggctggc ttgcgggtag agctggtgtc caagctggac
      781 cacaccttgc agtctccctg ggagattgca tcccagtggg tggttccccg ggaagtgtac
      841 cctgaagaga caccagagct gggggcaatc atgcatgcca tggccaccaa gaaaatcatt
      901 aaagctgatg taggttataa agggacacaa ctgaaagcct tactgatact tgaaggagga
      961 cagaaagttg tcttcaaacc taagcggtat aaccgagact atgtggtaga aggggaacct
     1021 tatgctggtt atgatagaca caatgcagag gtagcagcct ttcatttgga caggattctg
     1081 ggtttccgcc gagccccctt ggtggttggc agatttgtta atctgcggac agagatcaag
     1141 cctgttgcca cggagcagct cttgagcacc ttcctaactg taggaaataa tacttgtttc
     1201 tatgggaagt gttattattg ccgagaaaca gagccagcct gtgctgatgg agacacgatg
     1261 gaggggtctg tcacgctttg gcttccagat gtgtggcctc tacagaaaca ccgacaccca
     1321 tggggcagga cttaccgaga gggcaaatta gccaggtggg agtatgatga gagctactgt
     1381 gacgctgtga agaaaacgtc cccttatgac tccggccctc gcctcttgga catcattgat
     1441 acagctgtct ttgattacct gattggcaat gctgaccgcc atcactacga gagttttcaa
     1501 gacgatgaag gcgctagtat gctcattctt ctcgataatg ccaaaagctt tgggaacccc
     1561 tcgctggatg agagaagcat tcttgcccct ctctatcagt gttgcatcat tcgggtttct
     1621 acctggaaca gactgaactc cctgaagaat ggtgtgctga agtctgcctt aagatctgcc
     1681 atggcccatg accccatctc cccagtgctc tctgatcctc acctagatgc tgtggaccag
     1741 cggctcctga gtgtcctggc caccgtgaag cagtgcactg accagtttgg gatggacgca
     1801 gtgctggtgg aagacaggat gcctctctcc cacttgtaat tctccacaaa ataagtgaaa
     1861 cttcttttta caaagataga gaaacagcac aatcaattcc gaatggtatg aggtggattg
     1921 gaaatggcca gcagcacatt ctggtgatag gggacagggt ggccttggtg tttgctgtag
     1981 tagaagttga agcaaaggct acaagtttca gaccacggag ctgtacctgc tgaaccacct
     2041 tctgacttcc tcggcatatg cccattctag cagtgggtgt cacagttggt cagtattaat
     2101 tctcatgcca aaggacaaat tagaggtgtg acatttgaat agattaatgt tggggttggt
     2161 tctggagtat gtgttttgag tccatcctta taatcctttc tccacacttg tggattttcc
     2221 gaaaacactt tgtaatctct tgagtccttt cttaccagga ctagtcaaat tggaaatttt
     2281 actgcttcct aaggagtggc agcaagtaac ccagcgttct gttgagccaa agtagcatgc
     2341 tctgttggag ggactatgtt ttgaagatag aattagagga aagacaaaag caagaaagat
     2401 gtttgggctt ttaactgagt aggtggtgct tttgatgatt cttaaaggag ggaagaagag
     2461 agagagacct acttggtaga accagaatca aggcggtgat cgaattagtg aaaaacaggt
     2521 tcccctgtat ttaagttctt aacgtatata aaagcaagca tgacttgtac ctaagtaaga
     2581 tttgcattct cataattgtg tccaaattaa tccaaaaaag tgtccctgga gaacctacca
     2641 ttacaaccca agcacaattc tgtcatggag actttttttc cttttgccca gagcaggcaa
     2701 atcctttgca aattatcaaa gcaaactgaa ataacagctt gaataagagt taggttgcct
     2761 gtcttctctg ccatcctgat ttctaaaatg aatttccact tctgtcttca aggcatttgg
     2821 tcattaaagc ggctgttccc aagagattgg cgatcctact tgtgcctttc ttgtgaggaa
     2881 agccagctcg ctcctacgga taatatagtt tagatcctgc tggtggctgg acctatcttg
     2941 tgatttgggc catgtggaag gctggaaaca aagattttaa gccttctgag ccttaaaatt
     3001 aaggtggtta ccaggaagag ccttaagatt ttgatttatg tcaaaccctg atttcatcat
     3061 ttaatcttgt ttggagttct gaacccacga tgtagtattg tccttccgtc tcctattagc
     3121 actttcaaat ttcaagttgc taaaacaggc ttagttctgt gttctgccaa agcaatttga
     3181 catataagca cttgcattaa aatacagggc agaggaaact aggcctggtg tgcccactca
     3241 cgtgccctca gaggtgggtg cttctctcct gcattttgtc tggggactgt tgcggttttg
     3301 acttctgtga agcagacact gatatttaaa cagtgtggtt aaacaaattt actgccagct
     3361 attggagacc agttttacgt agccaccctt tcaaaaacag tttagaattt atgccccaat
     3421 tttctcaaat tgaaagataa ctgagtaccc caaaactact ttaaagtaac atgaccgggc
     3481 ttccctggtg gcgcagtggt tgagagtccg cctgctgatg caggggatac gggttcgtgc
     3541 cccggtccgg gaagatccca catgccgcgg agcggctggg cccatgagcc atggccactg
     3601 agcctgtgcg tccagagctg tgctccacaa tgggagaggc cacaacagtg agaggcccgc
     3661 gtaccgcaaa aaaaaaaaaa aaaaaaagac aacacttaaa gtaacgtgaa attaggacgc
     3721 ttttgtactt tagtatgtac atttggcaat gtacacagaa tgggctgagt tatttttaaa
     3781 aaggtattaa atttaagaag acaggtagta gcacaaaaca ctgagctagt gttaacaaaa
     3841 ggaagcatta actccaattt taaactcatt tactatgtgc atccagggaa gttcacattt
     3901 gagcctgaga ataccttgga tggtgcttac ctcagagcat cagggagcca gctggaggga
     3961 cagtgggaag gaagtcaatg ctgctttcct tggtaaatgt tagctgaact aaatttcttg
     4021 caaacatgtg ataccttcag tatgccccag tgaagtgaat aagagctgtt cccaaactgg
     4081 gaacttcatt catgatgttg aaggcagaag attctgctaa ggaaaaaagt aggaggaaaa
     4141 gctactttga aaaattcctc attctttttc ccaaacattg cagaaaatgt ataatctcat
     4201 tctctttccc tattttaaaa ttcatgatct taaaaggtgt tcaaatgtat agtggttaaa
     4261 gttagaatta tgctaataga gtggtgtgaa ctgatgctta gaatataaat ttatgttcta
     4321 agtcaggatc ggattaagct gcaaaagtac gtttagaatc ttggaaaaaa ccaaccataa
     4381 gcttatagcc ctaaaattca taaacactaa attctgtttc aaaaaagagg tagatatctt
     4441 tttttttaag ttttgtaaca ctgtcctctt gatggtttat cttttagaat cgaggactat
     4501 tataatcaaa cgggggtcat tggaagggtt tttgatcagt cctaacctgg gcttgcctag
     4561 ctaacatcta aaggtagatg tgggtacatt ttaatattat aaaactaaga aaatcagaac
     4621 tgagtaccat ttcctacctc ccttcttcca cttcttaaat attaggttgc ccaaaaagtt
     4681 cattctggct ttccacacca tcttacaaaa agcctgaatg aactttttgg ccaacccaat
     4741 atatttattc catagtttgg gtgaatatgg gtatagaggt ttcattcaag aattgtcatt
     4801 taatatgaag ctgtattttg ggttttgggg gtaaataatt ttctgtgcaa aacattaata
     4861 ggatctgatt tactcagagt attgctcaat aatttattaa taaggcattt ctccctattt
     4921 gcactcagga ttaatatgtc aaatgaaatc taataaggaa atgggagaat tcaggtacat
     4981 cctattattt tgggaaagat gaatcctata catggcagaa attccatgtc acctgaaggc
     5041 aacatgttct tccaaagaaa tccatctttt cctttcttta aaaaaaaaaa aaggcttttg
     5101 gccttcccct cccatccacc atgttccttc actctccctt ctccacggct tccgtattct
     5161 tgtttgacca ttacctgacc acacctcaaa tgatggtaaa cagcatctat cagtgagctg
     5221 tcttatgtga gtcgtcttgt gagcttgggc ttcaggaaac atgagtcaag gtatatgtat
     5281 atatatagtc atatatgtat tctaacaaga aaaaatgtat ttattttgac acagggaaac
     5341 actgttgctg aagaacctga agctaggaaa aggttctctt agtctctgag agtgaatcta
     5401 agtgacataa agatatccat tcagcaaaca cctcctgtgc tagccagggc cgacgcccga
     5461 gggacataga ccagcctcct gagactgttg tacaggggaa ggccagcttt cccctttcga
     5521 cgcctcaagt ctgggttgaa aaggtgaggg ctggatactc tactgccaca gggttttaag
     5581 gaactaaggt gttactcaca aatacaaaat gtctgtgggg gaactgggaa taacttactg
     5641 ggaagttaat ttatttgctt caaagagagg tgtaggaacc actaccctct gttttgatct
     5701 gccaaggatt tcctctcaga gctgttgcac aaatagaggt tgtgcttggt aagataccaa
     5761 acaagacaga tatgcaccta aatttctaat gtgttctgtg ggtttcaatt ctgaaagaaa
     5821 gaaaatgaat aaagatttta ataagtactg a
//
LOCUS       XR_004345683            2266 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAM20B glycosaminoglycan xylosylkinase
            (FAM20B), transcript variant X4, misc_RNA.
ACCESSION   XR_004345683
VERSION     XR_004345683.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2266
                     /gene="FAM20B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739698"
     misc_RNA        1..2266
                     /gene="FAM20B"
                     /product="FAM20B glycosaminoglycan xylosylkinase,
                     transcript variant X4"
                     /db_xref="GeneID:116739698"
ORIGIN      
        1 gtgtgggcgg gagccgcagt agcggcggct gggggcggtg agcgcggcgt ggggctgccc
       61 cttcccggag gtggcggggg cggccggggc cgcaccgcac cgcgcgggcg gccatggagc
      121 gagcctaggg cgccgcagga attgtgggag gcacctcagt gaagaaatgg accagtgtgt
      181 ataatcatgg aatctccttg ctgacaatca ccacctgctc tccttgataa gtgagagaga
      241 gtagtcaggg gagaaggaaa agaggtcaac atgaagctaa agcagcgagt cgtgctgtta
      301 gcaattctcc ttgtcatctt tatcttcacc aaagttttcc tgattgacaa cttagataca
      361 tcagctgcca accgggagga ccagagggcc tttcaccgaa tgatggctgg cttgcgggta
      421 gagctggtgt ccaagctgga ccacaccttg cagtctccct gggagattgc atcccagtgg
      481 gtggttcccc gggaagtgta ccctgaagag acaccagagc tgggggcaat catgcatgcc
      541 atggccacca agaaaatcat taaagctgat gtaggttata aagggacaca actgaaagcc
      601 ttactgatac ttgaaggagg acagaaagtt gtcttcaaac ctaagcggta taaccgagac
      661 tatgtggtag aaggggaacc ttatgctggt tatgatagac acaatgcaga ggtagcagcc
      721 tttcatttgg acaggattct gggtttccgc cgagccccct tggtggttgg cagatttgtt
      781 aatctgcgga cagagatcaa gcctgttgcc acggagcagc tcttgagcac cttcctaact
      841 gtaggaaata atacttgttt ctatgggaag tgttattatt gccgagaaac agagccagcc
      901 tgtgctgatg gagacacgat ggaggggtct gtcacgcttt ggcttccaga tgtgtggcct
      961 ctacagaaac accgacaccc atggggcagg acttaccgag agggcaaatt agccaggtgg
     1021 gagtatgatg agagctactg tgacgctgtg aagaaaacgt ccccttatga ctccggccct
     1081 cgcctcttgg acatcattga tacagctgtc tttgattacc tgattggcaa tgctgaccgc
     1141 catcactacg agagttttca agacgatgaa ggcgctagta tgctcattct tctcgataat
     1201 gccaaaagct ttgggaaccc ctcgctggat gagagaagca ttcttgcccc tctctatcag
     1261 tgttgcatca ttcgggtttc tacctggaac agactgaact ccctgaagaa tggtgtgctg
     1321 aagtctgcct taagatctgc catggcccat gaccccatct ccccagtgct ctctgatcct
     1381 cacctagatg ctgtggacca gcggctcctg agtgtcctgg ccaccgtgaa gcagtgcact
     1441 gaccagtttg ggatggacgc agtgctggtg gaagacagga tgcctctctc ccacttgtaa
     1501 ttctccacaa aataagtgaa acttcttttt acaaagatag agaaacagca caatcaattc
     1561 cgaatggtat gaggtggatt ggaaatggcc agcagcacat tctggtgata ggggacaggg
     1621 tggccttggt gtttgctgta gtagaagttg aagcaaaggc tacaagtttc agaccacgga
     1681 gctgtacctg ctgaaccacc ttctgacttc ctcggcatat gcccattcta gcagtgggtg
     1741 tcacagttgg gaaacactgt tgctgaagaa cctgaagcta ggaaaaggtt ctcttagtct
     1801 ctgagagtga atctaagtga cataaagata tccattcagc aaacacctcc tgtgctagcc
     1861 agggccgacg cccgagggac atagaccagc ctcctgagac tgttgtacag gggaaggcca
     1921 gctttcccct ttcgacgcct caagtctggg ttgaaaaggt gagggctgga tactctactg
     1981 ccacagggtt ttaaggaact aaggtgttac tcacaaatac aaaatgtctg tgggggaact
     2041 gggaataact tactgggaag ttaatttatt tgcttcaaag agaggtgtag gaaccactac
     2101 cctctgtttt gatctgccaa ggatttcctc tcagagctgt tgcacaaata gaggttgtgc
     2161 ttggtaagat accaaacaag acagatatgc acctaaattt ctaatgtgtt ctgtgggttt
     2221 caattctgaa agaaagaaaa tgaataaaga ttttaataag tactga
//
LOCUS       XM_032604329            5494 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAM20B glycosaminoglycan xylosylkinase
            (FAM20B), transcript variant X5, mRNA.
ACCESSION   XM_032604329
VERSION     XM_032604329.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5494
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5494
                     /gene="FAM20B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739698"
     CDS             313..1482
                     /gene="FAM20B"
                     /codon_start=1
                     /product="glycosaminoglycan xylosylkinase isoform X2"
                     /protein_id="XP_032460220.1"
                     /db_xref="GeneID:116739698"
                     /translation="MKLKQRVVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRM
                     MAGLRVELVSKLDHTLQSPWEIASQWVVPREVYPEETPELGAIMHAMATKKIIKADVG
                     YKGTQLKALLILEGGQKVVFKPKRYNRDYVVEGEPYAGYDRHNAEVAAFHLDRILGFR
                     RAPLVVGRFVNLRTEIKPVATEQLLSTFLTVGNNTCFYGKCYYCRETEPACADGDTME
                     GSVTLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDII
                     DTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSIRVSTWNRLNSLKNGVLKSAL
                     RSAMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQFGMDAVLVEDRMPLSHL"
     misc_feature    874..1434
                     /gene="FAM20B"
                     /note="C-terminal putative kinase domain of FAM20B xylose
                     kinase; Region: FAM20B_C; cd10470"
                     /db_xref="CDD:198461"
     misc_feature    order(1156..1158,1177..1179,1237..1239)
                     /gene="FAM20B"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:198461"
     misc_feature    1168..1194
                     /gene="FAM20B"
                     /note="putative catalytic loop [active]"
                     /db_xref="CDD:198461"
     misc_feature    order(1192..1194,1237..1239)
                     /gene="FAM20B"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:198461"
ORIGIN      
        1 gtgggaccgc ggggtgaggt ggccagggaa tggccgggcc gggtgtgggc gggagccgca
       61 gtagcggcgg ctgggggcgg tgagcgcggc gtggggctgc cccttcccgg aggtggcggg
      121 ggcggccggg gccgcaccgc accgcgcggg cggccatgga gcgagcctag ggcgccgcag
      181 gaattgtggg aggcacctca gtgaagaaat ggaccagtgt gtataatcat ggaatctcct
      241 tgctgacaat caccacctgc tctccttgat aagtgagaga gagtagtcag gggagaagga
      301 aaagaggtca acatgaagct aaagcagcga gtcgtgctgt tagcaattct ccttgtcatc
      361 tttatcttca ccaaagtttt cctgattgac aacttagata catcagctgc caaccgggag
      421 gaccagaggg cctttcaccg aatgatggct ggcttgcggg tagagctggt gtccaagctg
      481 gaccacacct tgcagtctcc ctgggagatt gcatcccagt gggtggttcc ccgggaagtg
      541 taccctgaag agacaccaga gctgggggca atcatgcatg ccatggccac caagaaaatc
      601 attaaagctg atgtaggtta taaagggaca caactgaaag ccttactgat acttgaagga
      661 ggacagaaag ttgtcttcaa acctaagcgg tataaccgag actatgtggt agaaggggaa
      721 ccttatgctg gttatgatag acacaatgca gaggtagcag cctttcattt ggacaggatt
      781 ctgggtttcc gccgagcccc cttggtggtt ggcagatttg ttaatctgcg gacagagatc
      841 aagcctgttg ccacggagca gctcttgagc accttcctaa ctgtaggaaa taatacttgt
      901 ttctatggga agtgttatta ttgccgagaa acagagccag cctgtgctga tggagacacg
      961 atggaggggt ctgtcacgct ttggcttcca gatgtgtggc ctctacagaa acaccgacac
     1021 ccatggggca ggacttaccg agagggcaaa ttagccaggt gggagtatga tgagagctac
     1081 tgtgacgctg tgaagaaaac gtccccttat gactccggcc ctcgcctctt ggacatcatt
     1141 gatacagctg tctttgatta cctgattggc aatgctgacc gccatcacta cgagagtttt
     1201 caagacgatg aaggcgctag tatgctcatt cttctcgata atgccaaaag cattcgggtt
     1261 tctacctgga acagactgaa ctccctgaag aatggtgtgc tgaagtctgc cttaagatct
     1321 gccatggccc atgaccccat ctccccagtg ctctctgatc ctcacctaga tgctgtggac
     1381 cagcggctcc tgagtgtcct ggccaccgtg aagcagtgca ctgaccagtt tgggatggac
     1441 gcagtgctgg tggaagacag gatgcctctc tcccacttgt aattctccac aaaataagtg
     1501 aaacttcttt ttacaaagat agagaaacag cacaatcaat tccgaatggt atgaggtgga
     1561 ttggaaatgg ccagcagcac attctggtga taggggacag ggtggccttg gtgtttgctg
     1621 tagtagaagt tgaagcaaag gctacaagtt tcagaccacg gagctgtacc tgctgaacca
     1681 ccttctgact tcctcggcat atgcccattc tagcagtggg tgtcacagtt ggtcagtatt
     1741 aattctcatg ccaaaggaca aattagaggt gtgacatttg aatagattaa tgttggggtt
     1801 ggttctggag tatgtgtttt gagtccatcc ttataatcct ttctccacac ttgtggattt
     1861 tccgaaaaca ctttgtaatc tcttgagtcc tttcttacca ggactagtca aattggaaat
     1921 tttactgctt cctaaggagt ggcagcaagt aacccagcgt tctgttgagc caaagtagca
     1981 tgctctgttg gagggactat gttttgaaga tagaattaga ggaaagacaa aagcaagaaa
     2041 gatgtttggg cttttaactg agtaggtggt gcttttgatg attcttaaag gagggaagaa
     2101 gagagagaga cctacttggt agaaccagaa tcaaggcggt gatcgaatta gtgaaaaaca
     2161 ggttcccctg tatttaagtt cttaacgtat ataaaagcaa gcatgacttg tacctaagta
     2221 agatttgcat tctcataatt gtgtccaaat taatccaaaa aagtgtccct ggagaaccta
     2281 ccattacaac ccaagcacaa ttctgtcatg gagacttttt ttccttttgc ccagagcagg
     2341 caaatccttt gcaaattatc aaagcaaact gaaataacag cttgaataag agttaggttg
     2401 cctgtcttct ctgccatcct gatttctaaa atgaatttcc acttctgtct tcaaggcatt
     2461 tggtcattaa agcggctgtt cccaagagat tggcgatcct acttgtgcct ttcttgtgag
     2521 gaaagccagc tcgctcctac ggataatata gtttagatcc tgctggtggc tggacctatc
     2581 ttgtgatttg ggccatgtgg aaggctggaa acaaagattt taagccttct gagccttaaa
     2641 attaaggtgg ttaccaggaa gagccttaag attttgattt atgtcaaacc ctgatttcat
     2701 catttaatct tgtttggagt tctgaaccca cgatgtagta ttgtccttcc gtctcctatt
     2761 agcactttca aatttcaagt tgctaaaaca ggcttagttc tgtgttctgc caaagcaatt
     2821 tgacatataa gcacttgcat taaaatacag ggcagaggaa actaggcctg gtgtgcccac
     2881 tcacgtgccc tcagaggtgg gtgcttctct cctgcatttt gtctggggac tgttgcggtt
     2941 ttgacttctg tgaagcagac actgatattt aaacagtgtg gttaaacaaa tttactgcca
     3001 gctattggag accagtttta cgtagccacc ctttcaaaaa cagtttagaa tttatgcccc
     3061 aattttctca aattgaaaga taactgagta ccccaaaact actttaaagt aacatgaccg
     3121 ggcttccctg gtggcgcagt ggttgagagt ccgcctgctg atgcagggga tacgggttcg
     3181 tgccccggtc cgggaagatc ccacatgccg cggagcggct gggcccatga gccatggcca
     3241 ctgagcctgt gcgtccagag ctgtgctcca caatgggaga ggccacaaca gtgagaggcc
     3301 cgcgtaccgc aaaaaaaaaa aaaaaaaaaa gacaacactt aaagtaacgt gaaattagga
     3361 cgcttttgta ctttagtatg tacatttggc aatgtacaca gaatgggctg agttattttt
     3421 aaaaaggtat taaatttaag aagacaggta gtagcacaaa acactgagct agtgttaaca
     3481 aaaggaagca ttaactccaa ttttaaactc atttactatg tgcatccagg gaagttcaca
     3541 tttgagcctg agaatacctt ggatggtgct tacctcagag catcagggag ccagctggag
     3601 ggacagtggg aaggaagtca atgctgcttt ccttggtaaa tgttagctga actaaatttc
     3661 ttgcaaacat gtgatacctt cagtatgccc cagtgaagtg aataagagct gttcccaaac
     3721 tgggaacttc attcatgatg ttgaaggcag aagattctgc taaggaaaaa agtaggagga
     3781 aaagctactt tgaaaaattc ctcattcttt ttcccaaaca ttgcagaaaa tgtataatct
     3841 cattctcttt ccctatttta aaattcatga tcttaaaagg tgttcaaatg tatagtggtt
     3901 aaagttagaa ttatgctaat agagtggtgt gaactgatgc ttagaatata aatttatgtt
     3961 ctaagtcagg atcggattaa gctgcaaaag tacgtttaga atcttggaaa aaaccaacca
     4021 taagcttata gccctaaaat tcataaacac taaattctgt ttcaaaaaag aggtagatat
     4081 cttttttttt aagttttgta acactgtcct cttgatggtt tatcttttag aatcgaggac
     4141 tattataatc aaacgggggt cattggaagg gtttttgatc agtcctaacc tgggcttgcc
     4201 tagctaacat ctaaaggtag atgtgggtac attttaatat tataaaacta agaaaatcag
     4261 aactgagtac catttcctac ctcccttctt ccacttctta aatattaggt tgcccaaaaa
     4321 gttcattctg gctttccaca ccatcttaca aaaagcctga atgaactttt tggccaaccc
     4381 aatatattta ttccatagtt tgggtgaata tgggtataga ggtttcattc aagaattgtc
     4441 atttaatatg aagctgtatt ttgggttttg ggggtaaata attttctgtg caaaacatta
     4501 ataggatctg atttactcag agtattgctc aataatttat taataaggca tttctcccta
     4561 tttgcactca ggattaatat gtcaaatgaa atctaataag gaaatgggag aattcaggta
     4621 catcctatta ttttgggaaa gatgaatcct atacatggca gaaattccat gtcacctgaa
     4681 ggcaacatgt tcttccaaag aaatccatct tttcctttct ttaaaaaaaa aaaaaggctt
     4741 ttggccttcc cctcccatcc accatgttcc ttcactctcc cttctccacg gcttccgtat
     4801 tcttgtttga ccattacctg accacacctc aaatgatggt aaacagcatc tatcagtgag
     4861 ctgtcttatg tgagtcgtct tgtgagcttg ggcttcagga aacatgagtc aaggtatatg
     4921 tatatatata gtcatatatg tattctaaca agaaaaaatg tatttatttt gacacaggga
     4981 aacactgttg ctgaagaacc tgaagctagg aaaaggttct cttagtctct gagagtgaat
     5041 ctaagtgaca taaagatatc cattcagcaa acacctcctg tgctagccag ggccgacgcc
     5101 cgagggacat agaccagcct cctgagactg ttgtacaggg gaaggccagc tttccccttt
     5161 cgacgcctca agtctgggtt gaaaaggtga gggctggata ctctactgcc acagggtttt
     5221 aaggaactaa ggtgttactc acaaatacaa aatgtctgtg ggggaactgg gaataactta
     5281 ctgggaagtt aatttatttg cttcaaagag aggtgtagga accactaccc tctgttttga
     5341 tctgccaagg atttcctctc agagctgttg cacaaataga ggttgtgctt ggtaagatac
     5401 caaacaagac agatatgcac ctaaatttct aatgtgttct gtgggtttca attctgaaag
     5461 aaagaaaatg aataaagatt ttaataagta ctga
//
LOCUS       XM_032604343            1997 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin family 3 member A (TOR3A),
            transcript variant X1, mRNA.
ACCESSION   XM_032604343
VERSION     XM_032604343.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1997
                     /gene="TOR3A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739711"
     CDS             171..1373
                     /gene="TOR3A"
                     /codon_start=1
                     /product="torsin-3A isoform X1"
                     /protein_id="XP_032460234.1"
                     /db_xref="GeneID:116739711"
                     /translation="MPRDPRSPLWLLLLLLLLPPPGTWGDGGRARPTEGAEEAGSAGS
                     WSAFQGLREQLRAAGALCRRYWALFSCRVWPEGCRQDEEPPARPPGWSLPLLGQQYLD
                     ILTTWYCSFQDCCDSGDCRIINNFTGLEADLRVRLHGQHLARELVLTAARGYLELPQP
                     DKALALSFHGWSGTGKNFVARMLAENLYRDGLRSDCVKVFVATLHFPHHKYVDLYQEQ
                     LAGQIRKTQEHCHQTLFILDEAEKLHPGLLEALRPHLEHQAPENPKAKSPRTIFLFLS
                     NVGGNIINEVVLNLLKAGWSREEIGMEHLEPQLQAGIVEATDSGFGHSCLVKENLIDF
                     FIPFLPLEYRHVRLCARDAFLSQELLYTEEALDEIAKMMVYVPKEEQLFSSQGCKSVS
                     QRINYFMP"
     misc_feature    522..878
                     /gene="TOR3A"
                     /note="Region: Torsin; pfam06309"
                     /db_xref="CDD:399367"
     misc_feature    678..701
                     /gene="TOR3A"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(681..704,882..884,999..1001)
                     /gene="TOR3A"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    870..887
                     /gene="TOR3A"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
ORIGIN      
        1 tggctcgccc tgggtcacgt gggaggcgag ctctgcccgc ctgcggttcc cgtggcaacg
       61 ccaatccccg gccaatccgg gcctcggaag tgccggcgcc gccccgccca ccggtggctg
      121 gaaagggccg tggaggacgg gcggcggagg gaccggctgc cgacccggcc atgcctcgcg
      181 acccgcggag tccgctctgg ctcctgctcc tgctgctgct gctgccgccc ccgggcacgt
      241 ggggagacgg cggccgcgcg aggccgacgg agggagccga ggaggcgggc tcggccgggt
      301 cctggtcggc cttccagggc ctgcgggagc agctgagggc ggccggcgcc ctctgcagac
      361 gctactgggc tctcttcagc tgccgcgtgt ggcccgaggg atgcaggcag gatgaggagc
      421 cgccggcgcg gcccccgggc tggagccttc ccctgttggg ccagcagtac ctggatatcc
      481 tgaccacctg gtactgcagc ttccaggact gttgtgacag tggggactgc aggatcatca
      541 ataacttcac aggcctagag gcggatctgc gcgtgcgcct gcacggccag cacctggccc
      601 gggagctggt cctgacagca gccaggggct acttggagct gccccagcca gacaaggccc
      661 tggctctgtc gttccacggc tggtctggca caggcaagaa cttcgtggca cggatgctgg
      721 cagagaacct gtaccgggac gggctgagga gcgactgtgt caaggtgttc gtcgccacgt
      781 tgcactttcc tcaccacaag tatgtggacc tgtaccagga gcagctggca ggccagatca
      841 ggaagacgca ggagcactgc caccagaccc tgttcatttt agatgaggct gagaagctgc
      901 acccaggact gctagaggcc ctcaggccac acctggaaca ccaggccccc gagaacccga
      961 aggccaagtc cccgagaacc atctttcttt ttctcagtaa cgttgggggc aatatcatca
     1021 atgaggtagt cctgaacctg cttaaggctg ggtggtcccg ggaagaaatt gggatggagc
     1081 acttggagcc ccaactccag gctgggattg tggaagccac agacagtggc tttggacaca
     1141 gctgtcttgt gaaggaaaac ctgattgact tcttcatccc cttcctgcca ctggagtatc
     1201 gtcacgtgag gctgtgtgca cgtgatgctt tcctgagcca agagctcctg tatacggaag
     1261 aggcactaga tgaaatcgcc aagatgatgg tgtacgtccc caaggaggaa caactcttct
     1321 cttctcaggg atgcaaatct gtttcccaga gaattaacta tttcatgcct tgagagctag
     1381 atgaaaactt cccaaagctg ccttccttcc actaatagga tccaggggcc tgtcagcaca
     1441 ctgtccagaa cgttaacggg ttggaggggc aggctagcat ccagcagcca caagcactaa
     1501 aagggaggcc ttaaatcaga gacagagcca attcttaaaa tcacttggtg ccttacagag
     1561 ccacattcca aaatggtcgg ccagctggtt ggagaaagtc atgtgggaga taaatcccaa
     1621 ggatttatta gcatatcagc tcctgcctgc agatgcctgg gcttgggggt tgggcctgag
     1681 gctgcagtat tctcagtgac agagaaggga aaaatgaact tctgcttacc agtggcagga
     1741 actgggtggg ttagctttca agttgttatt cccagaggga agctgatcag cttctatctg
     1801 tgagatcagg aaagagcctc aggctgaagg aaaaagtgca cagaggaaga tttttttttt
     1861 ttttaatcag gtcagtgtag gctaagcctt gttctgctct gcagatttaa atcaattaaa
     1921 attatttttt taagttaggg accttgacat gattttatcg tatgtaaaga ttaataaaat
     1981 tttgtatttt tctaaaa
//
LOCUS       XM_032604350            1883 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus torsin family 3 member A (TOR3A),
            transcript variant X2, mRNA.
ACCESSION   XM_032604350
VERSION     XM_032604350.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1883
                     /gene="TOR3A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739711"
     CDS             171..1259
                     /gene="TOR3A"
                     /codon_start=1
                     /product="torsin-3A isoform X2"
                     /protein_id="XP_032460241.1"
                     /db_xref="GeneID:116739711"
                     /translation="MPRDPRSPLWLLLLLLLLPPPGTWGDGGRARPTEGAEEAGSAGS
                     WSAFQGLREQLRAAGALCRRYWALFSCRVWPEGCRQDEEPPARPPGLEADLRVRLHGQ
                     HLARELVLTAARGYLELPQPDKALALSFHGWSGTGKNFVARMLAENLYRDGLRSDCVK
                     VFVATLHFPHHKYVDLYQEQLAGQIRKTQEHCHQTLFILDEAEKLHPGLLEALRPHLE
                     HQAPENPKAKSPRTIFLFLSNVGGNIINEVVLNLLKAGWSREEIGMEHLEPQLQAGIV
                     EATDSGFGHSCLVKENLIDFFIPFLPLEYRHVRLCARDAFLSQELLYTEEALDEIAKM
                     MVYVPKEEQLFSSQGCKSVSQRINYFMP"
     misc_feature    411..764
                     /gene="TOR3A"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; Region: P-loop
                     containing Nucleoside Triphosphate Hydrolases; cl38936"
                     /db_xref="CDD:476819"
     misc_feature    564..587
                     /gene="TOR3A"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(567..590,768..770,885..887)
                     /gene="TOR3A"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    756..773
                     /gene="TOR3A"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
ORIGIN      
        1 tggctcgccc tgggtcacgt gggaggcgag ctctgcccgc ctgcggttcc cgtggcaacg
       61 ccaatccccg gccaatccgg gcctcggaag tgccggcgcc gccccgccca ccggtggctg
      121 gaaagggccg tggaggacgg gcggcggagg gaccggctgc cgacccggcc atgcctcgcg
      181 acccgcggag tccgctctgg ctcctgctcc tgctgctgct gctgccgccc ccgggcacgt
      241 ggggagacgg cggccgcgcg aggccgacgg agggagccga ggaggcgggc tcggccgggt
      301 cctggtcggc cttccagggc ctgcgggagc agctgagggc ggccggcgcc ctctgcagac
      361 gctactgggc tctcttcagc tgccgcgtgt ggcccgaggg atgcaggcag gatgaggagc
      421 cgccggcgcg gcccccgggc ctagaggcgg atctgcgcgt gcgcctgcac ggccagcacc
      481 tggcccggga gctggtcctg acagcagcca ggggctactt ggagctgccc cagccagaca
      541 aggccctggc tctgtcgttc cacggctggt ctggcacagg caagaacttc gtggcacgga
      601 tgctggcaga gaacctgtac cgggacgggc tgaggagcga ctgtgtcaag gtgttcgtcg
      661 ccacgttgca ctttcctcac cacaagtatg tggacctgta ccaggagcag ctggcaggcc
      721 agatcaggaa gacgcaggag cactgccacc agaccctgtt cattttagat gaggctgaga
      781 agctgcaccc aggactgcta gaggccctca ggccacacct ggaacaccag gcccccgaga
      841 acccgaaggc caagtccccg agaaccatct ttctttttct cagtaacgtt gggggcaata
      901 tcatcaatga ggtagtcctg aacctgctta aggctgggtg gtcccgggaa gaaattggga
      961 tggagcactt ggagccccaa ctccaggctg ggattgtgga agccacagac agtggctttg
     1021 gacacagctg tcttgtgaag gaaaacctga ttgacttctt catccccttc ctgccactgg
     1081 agtatcgtca cgtgaggctg tgtgcacgtg atgctttcct gagccaagag ctcctgtata
     1141 cggaagaggc actagatgaa atcgccaaga tgatggtgta cgtccccaag gaggaacaac
     1201 tcttctcttc tcagggatgc aaatctgttt cccagagaat taactatttc atgccttgag
     1261 agctagatga aaacttccca aagctgcctt ccttccacta ataggatcca ggggcctgtc
     1321 agcacactgt ccagaacgtt aacgggttgg aggggcaggc tagcatccag cagccacaag
     1381 cactaaaagg gaggccttaa atcagagaca gagccaattc ttaaaatcac ttggtgcctt
     1441 acagagccac attccaaaat ggtcggccag ctggttggag aaagtcatgt gggagataaa
     1501 tcccaaggat ttattagcat atcagctcct gcctgcagat gcctgggctt gggggttggg
     1561 cctgaggctg cagtattctc agtgacagag aagggaaaaa tgaacttctg cttaccagtg
     1621 gcaggaactg ggtgggttag ctttcaagtt gttattccca gagggaagct gatcagcttc
     1681 tatctgtgag atcaggaaag agcctcaggc tgaaggaaaa agtgcacaga ggaagatttt
     1741 tttttttttt aatcaggtca gtgtaggcta agccttgttc tgctctgcag atttaaatca
     1801 attaaaatta tttttttaag ttagggacct tgacatgatt ttatcgtatg taaagattaa
     1861 taaaattttg tatttttcta aaa
//
LOCUS       XM_032604363            2909 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 7 (LRRC7),
            transcript variant X1, mRNA.
ACCESSION   XM_032604363
VERSION     XM_032604363.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2909
                     /gene="LRRC7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 Proteins, and 85%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739721"
     CDS             695..1348
                     /gene="LRRC7"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 7 isoform
                     X1"
                     /protein_id="XP_032460254.1"
                     /db_xref="GeneID:116739721"
                     /translation="MMENLIRGRNPPQYQRSPCKEVRAALRKRPEEELQCLEMTTKRK
                     IIGRLVPCRCFRGEEEIISVLDYSHCSLQQVPKEVFNFERTLEELYLDANQIEELPKQ
                     LFNCQALRKLSIPDNDLSNLPTTIASLVNLKELDISKNGVQEFPENIKCCKCLTIIEA
                     SVNPISKLPDGFTQLLNLTQLYLNDAFLEFLPANFGRLAKLRILELRENHLKTLPNI"
     misc_feature    <878..>1345
                     /gene="LRRC7"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    884..949
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    950..1018
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1019..1087
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1088..1156
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1157..1225
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1226..1294
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gccaatcctg gcacctgttc accgagccac tgcaccgagg aagaccccac tccgggcgaa
       61 ccctgggctc gaagctacgg acactcagcc cctgggcagc gggttctcgc cggagggacc
      121 tgcaaccgcc cactcggccg ccgcctgcag ccgcgggagc gcactgcccc tccgaaccgc
      181 ccgctgcgcc ccggtccccg gggatcctcg cccaggagag gcgcggcagc gggcaggggg
      241 tgttacggag ttgggtgcaa gattcgcctt ttctgctcgg atcttctccg cccaggattc
      301 attgtctgtg gagccttctg ggggtgggga gggagctgcg cctccgccac cgccgctgcc
      361 tcttctgctg cggtcgctag cgcagcgcgc agggcaggcg gaagctgggc agtggatgcg
      421 ctcctgcctc ccccgccagc gcttcgggct tcccctcggc tgcttcccgc cggaacctct
      481 ccaggtgtcc acctgaaggg cacgggcatc atggtctaac gtggcacctg cctggaatcc
      541 cctctttctc ctcttctcct ccttcaccgc tcctctcctc cgaggaccct cgtgcccact
      601 ccactgcgga cccccgaaca ctttaaggaa taacccttgg cagctgcacg attcactctc
      661 tccggaacct catgggcagt ttctcccgcc ggcgatgatg gagaacctaa taaggggaag
      721 gaatccccca caatatcaga gaagtccttg taaagaagtt cgtgcagccc ttcggaagag
      781 gcctgaagag gagttgcagt gcctggagat gaccaccaag cggaaaatca tcggccgtct
      841 ggtgccgtgc cgatgtttcc gaggtgaaga agaaatcatc tcagttttag attactccca
      901 ctgcagcctt cagcaggtgc caaaggaggt ctttaacttt gaacggacat tagaggaact
      961 ttacctagat gccaatcaaa ttgaagagct accaaagcaa ttgttcaact gtcaagctct
     1021 aagaaaacta agtattcctg acaatgacct ttcaaatctg ccaaccacta ttgctagttt
     1081 agttaacctt aaagaacttg acatcagtaa aaatggtgta caagaatttc cagaaaacat
     1141 aaagtgctgt aagtgtttaa caattattga agccagtgtc aatcccattt ctaaactccc
     1201 tgatggcttc acacagcttc taaacctgac ccagctctac ctgaatgatg cctttcttga
     1261 atttcttcca gccaattttg gaagacttgc caaattgcgg atattggagt taagagaaaa
     1321 tcacttgaaa actctaccaa acatctgaag atccagagtg tgccccttgc ccaatcgcct
     1381 gagactatac agtgacacct acaacagagg atgtggaggc agcagctttc gggcaccaga
     1441 aatggcagca tcaggagcat cagcacgaat agactttgta gaggtagttc tcccaaactg
     1501 tattatgaaa ccaaacattt ttggtgtgct acctgctgac gggggctgcc ttcttactgc
     1561 ctagtgttat gcaaaatgtt tggtctttgt taaagcttaa caataacatt tctgactaat
     1621 atagagcaac ctgatttttt tccaagtgtg ttcagttggc ttaactttca attaacatga
     1681 aattttatca gtctagaaaa acattaatac tcatatcttt gtccagttta tttcactctt
     1741 agtttatata aagctgctgt cacatataat ttttgtataa atttttttga ctagatcaga
     1801 atagaccatc attttaaaag acatcctaat gaagtaaata agagaatttc tctagtcagt
     1861 tatatacttc agagactgaa tagggttgcc caggttttct gtgtggaccg cctagtgatg
     1921 ttccattgtg aacttatttt gcaaagtgaa agattattcc cagatggtcc cagtcaaaat
     1981 atgaaaggcc agtgattgat tggtttcata tatcctttca ttttatgtaa tttaatgtga
     2041 aatagttatt ttgtagctat aaaacacatt tgttaattaa ccacattggc tttatctata
     2101 cagttcaatg acttataaca tttcaatttg catgtagaat gaacctctgt aatgatgtct
     2161 ttgcaaaata aataacaatt gacacaatgg gtgcatttgc ttttaacatg ttatacattt
     2221 gacttagaaa agtaggatat atttcatgtt gaaattttga agagtttgaa attcagcatc
     2281 cagagatctt catcttggtg cagtacaaca aattcattct tcaccccatc ttcactcctt
     2341 tttggaacaa ggcacgatac aaagaattta tactagttct attggaacta ttgcttgatt
     2401 aaatataatt tgaacattct ttgcataaac cagatatgag caggatagat acattgacct
     2461 taatagtatt tttagttttt tttgtttttt tctgttttat ttccttattt aggaaattac
     2521 aaattgtcat tttttgccaa atctacacta tggagttgaa atgtactttt ctgaatattt
     2581 ccattctgtc ttaatgtatt ttaattatgt gaatttataa aataatggcc ctaaatgcat
     2641 agacctttgt aaaaagtaca tatatatttg aaagtggatg ttgttttttt agttaaaatt
     2701 gtgtaaacac tgatttttcc atgagtactt ataaagatct tatgtaaaaa ttcataaaac
     2761 tacttaattg agtttgtaca acatagtttt tacctgtgtg tcatatactc atttacttct
     2821 gtcattttca caatatattg catatgtctc tagaaactgt atattgaaag gtatgttgct
     2881 cttctaagaa cacaaaagta aatctctga
//
LOCUS       XM_032604372            2984 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 7 (LRRC7),
            transcript variant X2, mRNA.
ACCESSION   XM_032604372
VERSION     XM_032604372.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2984
                     /gene="LRRC7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 82%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739721"
     CDS             869..1423
                     /gene="LRRC7"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 7 isoform
                     X2"
                     /protein_id="XP_032460263.1"
                     /db_xref="GeneID:116739721"
                     /translation="MQCLEMTTKRKIIGRLVPCRCFRGEEEIISVLDYSHCSLQQVPK
                     EVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDNDLSNLPTTIASLVNLKEL
                     DISKNGVQEFPENIKCCKCLTIIEASVNPISKLPDGFTQLLNLTQLYLNDAFLEFLPA
                     NFGRLAKLRILELRENHLKTLPNI"
     misc_feature    <953..>1420
                     /gene="LRRC7"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    959..1024
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1025..1093
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1094..1162
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1163..1231
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1232..1300
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1301..1369
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gccaatcctg gcacctgttc accgagccac tgcaccgagg aagaccccac tccgggcgaa
       61 ccctgggctc gaagctacgg acactcagcc cctgggcagc gggttctcgc cggagggacc
      121 tgcaaccgcc cactcggccg ccgcctgcag ccgcgggagc gcactgcccc tccgaaccgc
      181 ccgctgcgcc ccggtccccg gggatcctcg cccaggagag gcgcggcagc gggcaggggg
      241 tgttacggag ttgggtgcaa gattcgcctt ttctgctcgg atcttctccg cccaggattc
      301 attgtctgtg gagccttctg ggggtgggga gggagctgcg cctccgccac cgccgctgcc
      361 tcttctgctg cggtcgctag cgcagcgcgc agggcaggcg gaagctgggc agtggatgcg
      421 ctcctgcctc ccccgccagc gcttcgggct tcccctcggc tgcttcccgc cggaacctct
      481 ccaggtgtcc acctgaaggg cacgggcatc atggtctaac gtggcacctg cctggaatcc
      541 cctctttctc ctcttctcct ccttcaccgc tcctctcctc cgaggaccct cgtgcccact
      601 ccactgcgga cccccgaaca ctttaaggaa taacccttgg cagctgcacg attcactctc
      661 tccggaacct catgggcagt ttctcccgcc ggcgatgatg gagaacctaa taaggggaag
      721 gaatccccca caatatcaga gaagtccttg taaagaagtt cgtgcagccc ttcggaagag
      781 gcctgaagag gagtgagccc gctacatgaa aaaaatgcaa gtcaaagtgg tcacaaccta
      841 gaagtctgca gagacagaat aactagcaat gcagtgcctg gagatgacca ccaagcggaa
      901 aatcatcggc cgtctggtgc cgtgccgatg tttccgaggt gaagaagaaa tcatctcagt
      961 tttagattac tcccactgca gccttcagca ggtgccaaag gaggtcttta actttgaacg
     1021 gacattagag gaactttacc tagatgccaa tcaaattgaa gagctaccaa agcaattgtt
     1081 caactgtcaa gctctaagaa aactaagtat tcctgacaat gacctttcaa atctgccaac
     1141 cactattgct agtttagtta accttaaaga acttgacatc agtaaaaatg gtgtacaaga
     1201 atttccagaa aacataaagt gctgtaagtg tttaacaatt attgaagcca gtgtcaatcc
     1261 catttctaaa ctccctgatg gcttcacaca gcttctaaac ctgacccagc tctacctgaa
     1321 tgatgccttt cttgaatttc ttccagccaa ttttggaaga cttgccaaat tgcggatatt
     1381 ggagttaaga gaaaatcact tgaaaactct accaaacatc tgaagatcca gagtgtgccc
     1441 cttgcccaat cgcctgagac tatacagtga cacctacaac agaggatgtg gaggcagcag
     1501 ctttcgggca ccagaaatgg cagcatcagg agcatcagca cgaatagact ttgtagaggt
     1561 agttctccca aactgtatta tgaaaccaaa catttttggt gtgctacctg ctgacggggg
     1621 ctgccttctt actgcctagt gttatgcaaa atgtttggtc tttgttaaag cttaacaata
     1681 acatttctga ctaatataga gcaacctgat ttttttccaa gtgtgttcag ttggcttaac
     1741 tttcaattaa catgaaattt tatcagtcta gaaaaacatt aatactcata tctttgtcca
     1801 gtttatttca ctcttagttt atataaagct gctgtcacat ataatttttg tataaatttt
     1861 tttgactaga tcagaataga ccatcatttt aaaagacatc ctaatgaagt aaataagaga
     1921 atttctctag tcagttatat acttcagaga ctgaataggg ttgcccaggt tttctgtgtg
     1981 gaccgcctag tgatgttcca ttgtgaactt attttgcaaa gtgaaagatt attcccagat
     2041 ggtcccagtc aaaatatgaa aggccagtga ttgattggtt tcatatatcc tttcatttta
     2101 tgtaatttaa tgtgaaatag ttattttgta gctataaaac acatttgtta attaaccaca
     2161 ttggctttat ctatacagtt caatgactta taacatttca atttgcatgt agaatgaacc
     2221 tctgtaatga tgtctttgca aaataaataa caattgacac aatgggtgca tttgctttta
     2281 acatgttata catttgactt agaaaagtag gatatatttc atgttgaaat tttgaagagt
     2341 ttgaaattca gcatccagag atcttcatct tggtgcagta caacaaattc attcttcacc
     2401 ccatcttcac tcctttttgg aacaaggcac gatacaaaga atttatacta gttctattgg
     2461 aactattgct tgattaaata taatttgaac attctttgca taaaccagat atgagcagga
     2521 tagatacatt gaccttaata gtatttttag ttttttttgt ttttttctgt tttatttcct
     2581 tatttaggaa attacaaatt gtcatttttt gccaaatcta cactatggag ttgaaatgta
     2641 cttttctgaa tatttccatt ctgtcttaat gtattttaat tatgtgaatt tataaaataa
     2701 tggccctaaa tgcatagacc tttgtaaaaa gtacatatat atttgaaagt ggatgttgtt
     2761 tttttagtta aaattgtgta aacactgatt tttccatgag tacttataaa gatcttatgt
     2821 aaaaattcat aaaactactt aattgagttt gtacaacata gtttttacct gtgtgtcata
     2881 tactcattta cttctgtcat tttcacaata tattgcatat gtctctagaa actgtatatt
     2941 gaaaggtatg ttgctcttct aagaacacaa aagtaaatct ctga
//
LOCUS       XM_032604380            4471 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 7 (LRRC7),
            transcript variant X3, mRNA.
ACCESSION   XM_032604380
VERSION     XM_032604380.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4471
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4471
                     /gene="LRRC7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     48% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739721"
     CDS             309..863
                     /gene="LRRC7"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 7 isoform
                     X2"
                     /protein_id="XP_032460271.1"
                     /db_xref="GeneID:116739721"
                     /translation="MQCLEMTTKRKIIGRLVPCRCFRGEEEIISVLDYSHCSLQQVPK
                     EVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDNDLSNLPTTIASLVNLKEL
                     DISKNGVQEFPENIKCCKCLTIIEASVNPISKLPDGFTQLLNLTQLYLNDAFLEFLPA
                     NFGRLAKLRILELRENHLKTLPNI"
     misc_feature    <393..>860
                     /gene="LRRC7"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    399..464
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    465..533
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    534..602
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    603..671
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    672..740
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    741..809
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gagggcgcag cgccaggcag agaagggaag ggtcactttc acaactcccg ggaatcggct
       61 tcaggaagga accatctgag actcccacga ctcccacgtt cctttcgaag ttgtccttca
      121 aaagaaatta gaaaaggatg gagaacctaa taaggggaag gaatccccca caatatcaga
      181 gaagtccttg taaagaagtt cgtgcagccc ttcggaagag gcctgaagag gagtgagccc
      241 gctacatgaa aaaaatgcaa gtcaaagtgg tcacaaccta gaagtctgca gagacagaat
      301 aactagcaat gcagtgcctg gagatgacca ccaagcggaa aatcatcggc cgtctggtgc
      361 cgtgccgatg tttccgaggt gaagaagaaa tcatctcagt tttagattac tcccactgca
      421 gccttcagca ggtgccaaag gaggtcttta actttgaacg gacattagag gaactttacc
      481 tagatgccaa tcaaattgaa gagctaccaa agcaattgtt caactgtcaa gctctaagaa
      541 aactaagtat tcctgacaat gacctttcaa atctgccaac cactattgct agtttagtta
      601 accttaaaga acttgacatc agtaaaaatg gtgtacaaga atttccagaa aacataaagt
      661 gctgtaagtg tttaacaatt attgaagcca gtgtcaatcc catttctaaa ctccctgatg
      721 gcttcacaca gcttctaaac ctgacccagc tctacctgaa tgatgccttt cttgaatttc
      781 ttccagccaa ttttggaaga cttgccaaat tgcggatatt ggagttaaga gaaaatcact
      841 tgaaaactct accaaacatc tgaagatcca gagtgtgccc cttgcccaat cgcctgagac
      901 tatacagtga cacctacaac agaggatgtg gaggcagcag ctttcgggca ccagaaatgg
      961 cagcatcagg agcatcagca cgaatagact ttgtagaggt agttctccca aactgtatta
     1021 tgaaaccaaa catttttggt gtgctacctg ctgacggggg ctgccttctt actgcctagt
     1081 gttatgcaaa atgtttggtc tttgttaaag cttaacaata acatttctga ctaatataga
     1141 gcaacctgat ttttttccaa gtgtgttcag ttggcttaac tttcaattaa catgaaattt
     1201 tatcagtcta gaaaaacatt aatactcata tctttgtcca gtttatttca ctcttagttt
     1261 atataaagct gctgtcacat ataatttttg tataaatttt tttgactaga tcagaataga
     1321 ccatcatttt aaaagacatc ctaatgaagt aaataagaga atttctctag tcagttatat
     1381 acttcagaga ctgaataggg ttgcccaggt tttctgtgtg gaccgcctag tgatgttcca
     1441 ttgtgaactt attttgcaaa gtgaaagatt attcccagat ggtcccagtc aaaatatgaa
     1501 aggccagtga ttgattggtt tcatatatcc tttcatttta tgtaatttaa tgtgaaatag
     1561 ttattttgta gctataaaac acatttgtta attaaccaca ttggctttat ctatacagtt
     1621 caatgactta taacatttca atttgcatgt agaatgaacc tctgtaatga tgtctttgca
     1681 aaataaataa caattgacac aatgggtgca tttgctttta acatgttata catttgactt
     1741 agaaaagtag gatatatttc atgttgaaat tttgaagagt ttgaaattca gcatccagag
     1801 atcttcatct tggtgcagta caacaaattc attcttcacc ccatcttcac tcctttttgg
     1861 aacaaggcac gatacaaaga atttatacta gttctattgg aactattgct tgattaaata
     1921 taatttgaac attctttgca taaaccagat atgagcagga tagatacatt gaccttaata
     1981 gtatttttag ttttttttgt ttttttctgt tttatttcct tatttaggaa attacaaatt
     2041 gtcatttttt gccaaatcta cactatggag ttgaaatgta cttttctgaa tatttccatt
     2101 ctgtcttaat gtattttaat tatgtgaatt tataaaataa tggccctaaa tgcatagacc
     2161 tttgtaaaaa gtacatatat atttgaaagt ggatgttgtt tttttagtta aaattgtgta
     2221 aacactgatt tttccatgag tacttataaa gatcttatgt aaaaattcat aaaactactt
     2281 aattgagttt gtacaacata gtttttacct gtgtgtcata tactcattta cttctgtcat
     2341 tttcacaata tattgcatat gtctctagaa actgtatatt gaaaggtatg ttgctcttct
     2401 aagaacacaa aagtaaatct ctgactctgc tttaaaacag attgagctat tttagtatag
     2461 ttttataatg tgctctcatc atgtccttca aatgccattt tcaagattac ttaaaacatt
     2521 ctgcatgaaa gtagctttaa agtatttaag aaatacttct tcctctatca tgttccaagt
     2581 aaggaactgg attttccact attaaatttt aaaaggctta cagagctgca gttaaaatct
     2641 gcagcatagt gcagtagtag ataattattt tggtggcgtg acctaactgc agtaaaccat
     2701 gttgcattcc tggtcttatg ataacattac aattgagacc ttatatatat aggttaaagg
     2761 aaacttttct taaggaaaga cattaacaag taacaaataa ttgttatcaa gttggaatgg
     2821 tttaaaactg catcagcaga agtgattaca aaagtaaaaa attaaatcaa ataccactga
     2881 atatgatact taattcattt ttgcccactg ttcatgctgt gtcactgtag tgttccaaca
     2941 agtggaagtg attataaatt ccttcacaat gtttatggca ctctaatctt ttatgctaag
     3001 aggagtcaca tataccaatt taacaaaaat attaaatgtg ttcatttcat aaagttacat
     3061 aatttttagc ccctctctct atattttttt aaactagata aactggtaaa aggataagat
     3121 gtgtttatgt acatttgtta ttattgaaat aacagtaatc tcctattgag ctatctttta
     3181 gaaatatatt ctattgatta tacattcatg gatagtggaa tatgcatatt aaatcagaat
     3241 ttgactaaat ctacaataat aactaaaaca aaaataactc ttaagaagaa ggcagcacaa
     3301 taggtgctta cccattctcc aggataccac gtattacaac agaacccctt ccttctttgt
     3361 aagataagtg tccctcctgg gaacctgggc caccatttga gcaacatatt gaattgcctt
     3421 tcaacatctt actgacatct catgaaaaga aggcaacttt tatggctctt agcagcgtct
     3481 tagaaaatag aatacatctc cctatgtttc tcagaaatta caggttccta catgtttatt
     3541 aagaatttca tatactctcc catccctatt tttttgttca tatcaaattt taccaactac
     3601 aatttctgcc atttttattt tcttttaaat caagtcaact tttcctggag caaaactggc
     3661 agatctaaat tttgtcacaa aagattatga ttattttaca aatttttaat cataaacaaa
     3721 acataacaaa gttatattag gtgttttcag ttttatatta tttgcttctg ctacagcaat
     3781 cagtataaat tgtataaaga ctgataattt atatgtattt attggcagaa aaccagaagt
     3841 ctcaattact caggctacta gaatattgtt gagtacttgt ataggtgtca cttttatttg
     3901 aattactaaa atatagtttt agtccatcat tctaaaattt agcagatatc ttttaagtaa
     3961 ggtaatgatc ctgccctttc tcttctctct tcacctactt gactggtttc ttactatcca
     4021 tcctttaatc ttccaatgta tcaggcctat acatctatct ttctgtctta tttatttatg
     4081 tacttgcctt ttacattctt ctaaattgta gatttcttga ggacaaggta ggctgtttta
     4141 ttcattctcc agaataccta gaatggtggc ttgcaaatag tatgcatagc taatgaagaa
     4201 aaaagaaaag aaaggaagaa aagtaatccc cccaaatact taaggaaaat aagattactt
     4261 ccagggagag gtaaggagga catatttgag aacatgtgat ctaggtttta aaggggaagt
     4321 tatatttcaa ctattgggaa gaaagcagca gtatacttgc agaggaaatg aaggatataa
     4381 gaacgtacag ggcatagtta cggaatgccc tgattttgct gacggctgga taagttaaaa
     4441 tgagcagtgg aagtaaaagt tgaaaggtgg a
//
LOCUS       XM_032604391            5766 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 7 (LRRC7),
            transcript variant X4, mRNA.
ACCESSION   XM_032604391
VERSION     XM_032604391.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5766
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5766
                     /gene="LRRC7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 89% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739721"
     CDS             660..5387
                     /gene="LRRC7"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 7 isoform
                     X3"
                     /protein_id="XP_032460282.1"
                     /db_xref="GeneID:116739721"
                     /translation="MMENLIRGRNPPQYQRSPCKEVRAALRKRPEEELQCLEMTTKRK
                     IIGRLVPCRCFRGEEEIISVLDYSHCSLQQVPKEVFNFERTLEELYLDANQIEELPKQ
                     LFNCQALRKLSIPDNDLSNLPTTIASLVNLKELDISKNGVQEFPENIKCCKCLTIIEA
                     SVNPISKLPDGFTQLLNLTQLYLNDAFLEFLPANFGRLAKLRILELRENHLKTLPKSM
                     HKLAQLERLDLGNNEFSELPEVLDQIQNLRELWMDNNALQVLPGSIGKLKMLVYLDMS
                     KNRIETVDLDISGCEALEDLLLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIG
                     NLSLLEEFDCSCNELESLPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRS
                     NKLEFLPEEIGQMQKLRVLNLSDNRLKNLPFSFTKLKELAALWLSDNQSKALIPLQTE
                     AHPETKQRVLTNYMFPQQPRGDEDFQSDSDSFNPTLWEEQRQQRMTVAFEFEEKKEDD
                     ENAGKVKDHSCQAPWERGQRGITLQPARLSGDCCTPWARCDQQIQDMPVPQNDPQLAW
                     GCISGLQQERSMCTPLPVAAQSTTLPSLSGRQVEINLKRYPTPYPEDLKNMVKSVQNL
                     VGKPSHGVRVENSNPTANTEQTVKEKYEHKWPVAPKEITVEDSFVHPANEMRIGELHP
                     SLAETPLYPPKLVLLGKDKKESTDESEVDKTHCLNNSVSSGTYSDYSPSQASSGSSNT
                     RVKVGSLQTTAKEAVHNSLWGNRIAQSFPQPLDAKPLLSQREAVPPGNLPQRPDRLPL
                     SDTFTDNWTDGSHYDNTGFVAEETTGENANNNPLLSSKSRSTSSHGRRPLIRQDRIVG
                     VPLELEQSTHRHTPETEVPPSNPWQNWTRTPSPFEDRTAFPSKLETTPTTSPLPERKE
                     HIKESAEIPSPFSPGVPWEYHDSNPNRSLSNVFSQIHCRPESSKGVISISKSTERLSP
                     LMKDIKSNKFKKSQSIDEIDIGTYKVYNIPLENYASGSDHLGSHERPDKMLGPEHGMS
                     SMSRSQSVPMLDDEMLTYGSSKGPQQQKASMTKKVYQFDQSFNPQGAVEVKAEKRIPP
                     PFQHNSEYVQQPGKNITKDLVSPRAYRGYPPIEQIFSFSQPSVNEDAVVNAQFASQGA
                     RAGFLRRADSLASSTEMAMFRRVSEPHELPPNDRYGRPPYRAGLDRQSSVSVTESQFL
                     KRNGRYEDEHPSYQEVKAQAGSFPVKNLTQRRPLSARSYSTESYGASQTRPVSARPTM
                     AALLEKIPSDYNLGNYGDKPSDNSDIKTRPTPVKGEESCGKMPADWRQQLLRHIEARR
                     LDRNAAYKHSTVNLGMLPYGGISAMHAGRSMTLNLQTKSKFDLQELPLQKTPSQQSNI
                     LDNGQEDVSPSGQWNPYPLGRRDVPPDTITKKAGSHIQTLMGSQSLQHRSREQQPYEG
                     NINKVTIQQFQSPLPIQIPSSQATRGPQPGRCLIQTKGQRSMDGYPEQFCVRIEKNPG
                     LGFSISGGISGQGNPFKPSDKGIFVTRVQPDGPASNLLQPGDKILQANGHSFVHMEHE
                     KAVLLLKSFQNTVDLVIQRELTV"
     misc_feature    <702..>1499
                     /gene="LRRC7"
                     /note="type III secretion system effector E3 ubiquitin
                     transferase SlrP; Region: PRK15370"
                     /db_xref="CDD:185268"
     misc_feature    849..914
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    915..983
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    984..1052
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1053..1190
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1182..>2012
                     /gene="LRRC7"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1191..1259
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1260..1328
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1329..1397
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1398..1466
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1467..1535
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1605..1667
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1674..1742
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1743..1811
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1812..1880
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1881..1949
                     /gene="LRRC7"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    5112..5372
                     /gene="LRRC7"
                     /note="PDZ domain of densin, erbin, and related domains;
                     Region: PDZ_densin_erbin-like; cd06749"
                     /db_xref="CDD:467231"
     misc_feature    order(5139..5159,5217..5219,5226..5228,5310..5312,
                     5322..5324,5331..5336)
                     /gene="LRRC7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467231"
ORIGIN      
        1 cgaggaagac cccactccgg gcgaaccctg ggctcgaagc tacggacact cagcccctgg
       61 gcagcgggtt ctcgccggag ggacctgcaa ccgcccactc ggccgccgcc tgcagccgcg
      121 ggagcgcact gcccctccga accgcccgct gcgccccggt ccccggggat cctcgcccag
      181 gagaggcgcg gcagcgggca gggggtgtta cggagttggg tgcaagattc gccttttctg
      241 ctcggatctt ctccgcccag gattcattgt ctgtggagcc ttctgggggt ggggagggag
      301 ctgcgcctcc gccaccgccg ctgcctcttc tgctgcggtc gctagcgcag cgcgcagggc
      361 aggcggaagc tgggcagtgg atgcgctcct gcctcccccg ccagcgcttc gggcttcccc
      421 tcggctgctt cccgccggaa cctctccagg tgtccacctg aagggcacgg gcatcatggt
      481 ctaacgtggc acctgcctgg aatcccctct ttctcctctt ctcctccttc accgctcctc
      541 tcctccgagg accctcgtgc ccactccact gcggaccccc gaacacttta aggaataacc
      601 cttggcagct gcacgattca ctctctccgg aacctcatgg gcagtttctc ccgccggcga
      661 tgatggagaa cctaataagg ggaaggaatc ccccacaata tcagagaagt ccttgtaaag
      721 aagttcgtgc agcccttcgg aagaggcctg aagaggagtt gcagtgcctg gagatgacca
      781 ccaagcggaa aatcatcggc cgtctggtgc cgtgccgatg tttccgaggt gaagaagaaa
      841 tcatctcagt tttagattac tcccactgca gccttcagca ggtgccaaag gaggtcttta
      901 actttgaacg gacattagag gaactttacc tagatgccaa tcaaattgaa gagctaccaa
      961 agcaattgtt caactgtcaa gctctaagaa aactaagtat tcctgacaat gacctttcaa
     1021 atctgccaac cactattgct agtttagtta accttaaaga acttgacatc agtaaaaatg
     1081 gtgtacaaga atttccagaa aacataaagt gctgtaagtg tttaacaatt attgaagcca
     1141 gtgtcaatcc catttctaaa ctccctgatg gcttcacaca gcttctaaac ctgacccagc
     1201 tctacctgaa tgatgccttt cttgaatttc ttccagccaa ttttggaaga cttgccaaat
     1261 tgcggatatt ggagttaaga gaaaatcact tgaaaactct accaaagtca atgcacaaac
     1321 tggcccagtt ggaaagactt gacctaggca ataatgaatt cagtgagctg cctgaagttc
     1381 tggatcaaat acaaaattta agggagctgt ggatggataa taatgcattg caagtgctac
     1441 ctgggtctat agggaagtta aagatgttgg tatacctgga tatgtcaaaa aacagaatag
     1501 aaacggttga cttggacatt tctggatgtg aagccctgga ggacctctta ctgtcatcca
     1561 atatgttgca acagttgcct gactctatag gtttgttgaa aaaactaact actctgaaag
     1621 tagatgacaa tcaacttaca atgctaccga atacaatcgg aaatttatct ttattagaag
     1681 aatttgactg tagctgtaat gaactggagt cactaccttc tactattggc taccttcaca
     1741 gtcttcgaac gttagcagtc gatgagaatt tccttccaga attacccaga gaaattggaa
     1801 gctgtaagaa tgtaacagtt atgtctctac gctccaataa actggaattt cttcctgaag
     1861 agattggaca gatgcagaag ctaagagtct taaatttgag tgacaacaga ttgaagaatt
     1921 taccattctc atttaccaaa cttaaggagc ttgcagcttt gtggctttct gacaatcagt
     1981 ccaaagccct tatcccttta caaactgaag cccatccaga aacaaagcaa agagtattga
     2041 ctaactacat gtttccacag caacctcgtg gtgatgaaga tttccagtca gacagtgaca
     2101 gctttaaccc tacactgtgg gaagaacaga gacaacaacg catgactgtt gcctttgaat
     2161 ttgaagaaaa aaaggaagat gatgaaaatg ctgggaaagt taaggatcac tcctgccaag
     2221 ccccctggga aaggggccag cgtgggatta ctctccaacc tgccagactg tctggcgatt
     2281 gctgcacacc atgggccagg tgtgatcagc agatccaaga tatgcccgtc ccccagaatg
     2341 acccacagct ggcatggggt tgtataagtg gcctccagca ggaaaggagc atgtgtactc
     2401 cattgccagt tgcagcacaa tccaccactc ttccctctct aagtggcaga caggttgaaa
     2461 taaacctaaa acgatatcca actccttacc cagaggattt aaagaatatg gtaaaatctg
     2521 ttcaaaatct ggtgggtaag ccaagccatg gagtgcgtgt tgagaattca aatccaactg
     2581 ctaacacgga gcaaactgtg aaagaaaaat acgaacacaa gtggcctgta gccccaaagg
     2641 agattacagt ggaggattct tttgttcatc cagctaatga aatgaggatt ggggaacttc
     2701 acccttcatt agctgagacc cctctgtacc cacccaaact tgttctgcta gggaaggaca
     2761 aaaaagaatc aaccgatgag tctgaagttg acaaaactca ctgtctgaat aacagtgttt
     2821 cctcaggcac ttactcagac tactcgcctt cccaggcttc ctcaggatcc tctaacaccc
     2881 gggttaaagt ggggtccttg cagacaacag ctaaagaggc agtacataat tctttgtggg
     2941 gtaacaggat tgcacaatct ttcccacagc ctcttgatgc aaagccattg ctcagccagc
     3001 gggaggctgt ccccccaggg aatctaccac agcgtcctga ccggctgcca ttgagtgaca
     3061 ctttcactga caactggact gatggctcac attatgataa caccgggttt gttgcagagg
     3121 aaaccacagg cgagaatgcc aacaataatc ctctcctgag ttcaaaatct agaagcacat
     3181 cttctcatgg acgcaggcct ttgattaggc aggacaggat tgttggtgtt cccctggaac
     3241 ttgagcagtc tacacacaga cacacaccag aaacagaagt gcctccttcc aatccttggc
     3301 agaattggac cagaacccct agtccttttg aagacaggac tgctttccct tccaaattag
     3361 agacaacccc taccaccagc ccattgcctg aaaggaaaga acatataaaa gaatctgctg
     3421 aaatacctag tcctttttct ccaggagtac catgggagta tcatgattct aatcccaaca
     3481 ggagtctcag taatgtcttt tctcaaatcc actgccgccc agaatcttct aaaggtgtta
     3541 tttcaattag caaaagcaca gagaggcttt ccccactaat gaaagacatc aagtccaata
     3601 aattcaagaa gtcacagagt atcgatgaga ttgacattgg tacatacaag gtttataata
     3661 taccattaga aaactatgct tctgggagtg atcacttagg aagtcacgaa cgacctgaca
     3721 aaatgttagg accagagcac ggtatgtcca gtatgtctcg aagccagtca gtcccgatgc
     3781 tggatgacga gatgctcaca tatggaagta gtaaagggcc acaacaacaa aaagcttcca
     3841 tgacaaaaaa agtctatcaa tttgaccaaa gcttcaatcc ccaaggagca gtggaggtta
     3901 aagctgaaaa gaggataccg cccccatttc aacacaattc tgagtacgtg caacagccgg
     3961 gcaaaaacat caccaaggat ttggttagtc ctagagctta cagaggatac ccaccgattg
     4021 agcaaatatt ttcattttct cagccatctg ttaatgagga tgctgtggta aatgcccagt
     4081 ttgcaagcca aggtgccagg gcaggcttct tgagaagagc tgactccctg gcgagttcca
     4141 cagaaatggc catgtttaga agggtcagtg aacctcatga gctgcctccg aatgataggt
     4201 acggcagacc tccatatagg gcaggtctgg atcgccaaag cagcgtttca gtgactgagt
     4261 cccagttcct gaaaaggaat ggcaggtatg aagatgaaca cccttcatat caagaagtga
     4321 aagctcaggc gggaagtttt ccagttaaaa accttaccca aaggaggcca ttgtctgcaa
     4381 gaagctacag tacagagagt tatggtgcct cccaaaccag gccagtttca gctaggccta
     4441 ctatggcagc tcttttggaa aaaataccat ctgactataa cttgggtaac tatggtgaca
     4501 agccatcaga taacagtgat ataaagacga ggcctactcc tgtgaaggga gaggagagct
     4561 gtggtaaaat gcctgcagac tggagacaac agctgcttag acatatagaa gctagaaggt
     4621 tagacaggaa tgctgcttac aaacacagca cagttaacct tggcatgctg ccctatggag
     4681 gtatttcagc aatgcatgca ggcagaagca tgactttaaa cttgcagact aagtctaaat
     4741 ttgatctaca agaactacct cttcagaaaa ccccgtccca gcaaagcaac attttagaca
     4801 atggacaaga agatgtatct cctagtggcc agtggaatcc ttatcctctt gggaggcggg
     4861 atgtacctcc ggacaccatt actaaaaagg caggcagcca catccagact ttgatggggt
     4921 cccagagcct tcaacatcgt agccgggagc agcagccata tgagggaaac ataaacaaag
     4981 tgaccatcca gcagtttcag tcaccattgc ctattcagat cccctcttca caggccaccc
     5041 ggggacctca gcctggacgg tgcttaattc aaactaaagg gcaaaggagt atggatggct
     5101 atccagagca gttttgtgtg agaatagaaa agaatcctgg ccttggattt agtatcagtg
     5161 gtggaattag tggacaagga aatccattta aaccttctga caagggtatc tttgttacta
     5221 gggttcagcc tgatggacca gcatccaacc tgctgcagcc tggtgataag atccttcagg
     5281 caaatggaca tagttttgta catatggaac atgaaaaagc tgtattacta ctgaagagtt
     5341 tccagaacac agtagaccta gttattcaac gtgagcttac tgtctaaata ttttttataa
     5401 atagtgaaga tacgtctagc cagacctaat gttcaaaaat aaatttatac atagaaacaa
     5461 attttgccaa ttgctggacc aatggcaaac attagtgcca aatgtataat actatatgtt
     5521 agcactggtc atccttaaaa atgttaacta tataaatatg atgttcatgt ggttatgtat
     5581 tattttaact gtcagcctct ggctgtgcat tggtgcagtt ttggttttgg ttttgttttt
     5641 tttttttaat caaataagtt tcttcttgaa gtggatttca tataatttcg gagcacggaa
     5701 gcacacacaa gctctttaca aattctgctc tccatcagaa acactgcctc aaagttgtat
     5761 atgcct
//
LOCUS       XR_004345690             653 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739738
            (LOC116739738), ncRNA.
ACCESSION   XR_004345690
VERSION     XR_004345690.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..653
                     /gene="LOC116739738"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739738"
     ncRNA           1..653
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739738"
                     /product="uncharacterized LOC116739738"
                     /db_xref="GeneID:116739738"
ORIGIN      
        1 caaatgaaaa tatgtaataa acattacttg gaaaaatatt ttgtggatag agttgggcca
       61 aagtctgcat gaagccattc ttatttgcag gctccctttc tgcagatgat tcactcttaa
      121 aaactccttt ccctacacac ccatttcctt agctttcatt ttatttcatt tccttagatt
      181 tccatactta aaccctggaa ttctgccgac tgaagctcca tggttcacat tcagccacaa
      241 ggtgatttct ggcttaatga acatcactag aaacagtgtc aaaggtgaag acgattgcaa
      301 cctgtcccca taacaatcag ctgggagcct cagagagagt cctcaatacc gtaaagttca
      361 acattttaaa aacagaagtg gaaacagttc tactaaggca ttgccacctt cacgcttgta
      421 tacaaggata gaagaagtca tttactgcct ttggaacatc atggggagtt gaaggaatgg
      481 atgtacagca gcagcagcag tgaggaaaag aggtacagga cagcttcctc agcagaaaga
      541 ttccaataaa aatcaaagac caaggttctt aatatgctta caatgtagag cccctgctct
      601 gcaacaagag aagccaccac aatgagaagc ccgcacacca caacgaagag tag
//
LOCUS       XM_032604411             795 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptophysin like 2 (SYPL2), mRNA.
ACCESSION   XM_032604411
VERSION     XM_032604411.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..795
                     /gene="SYPL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 23% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739741"
     CDS             1..795
                     /gene="SYPL2"
                     /codon_start=1
                     /product="synaptophysin-like protein 2"
                     /protein_id="XP_032460302.1"
                     /db_xref="GeneID:116739741"
                     /translation="MSSTESSSRTTDKSPRQQVDRLLVGLRWRRLEEPLGFIKVLQWL
                     FAIFAFGSCGSYSGETGATVRCNNEAKDVSTILVSFGYPFRLNRVQYEMPLCDDESTS
                     KTMHLMGDFSAPAEFFVTLGIFSFFYTIAALVLYLRFHNIYTENRRFPLVDFCVTVSF
                     TFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSVCHGEEAVCSAGATPSMGLANISVLF
                     GFISFFLWAGNCWFVFKETPWHGQGQDQGQGAGQESAAEQGAVEKQ"
     misc_feature    88..696
                     /gene="SYPL2"
                     /note="Membrane-associating domain; Region: MARVEL;
                     pfam01284"
                     /db_xref="CDD:366555"
ORIGIN      
        1 atgtcctcga cggagagctc cagtcgcacg acggacaagt cgccgcgcca gcaggtggac
       61 cgcctgctcg tggggctgcg ctggaggcgg ctggaggagc cgctgggctt catcaaagtt
      121 ctccagtggc tctttgctat tttcgccttc gggtcctgcg gctcctacag tggggaaaca
      181 ggagcaacgg ttcgctgcaa caacgaagcc aaggacgtga gcaccatcct tgtttcgttc
      241 ggctatccct tcaggttgaa ccgggtccag tatgagatgc ccctctgcga cgatgaatcc
      301 acctccaaga ccatgcatct catgggggac ttctctgccc ccgccgagtt cttcgtgacc
      361 ctgggcatct tttccttctt ctacaccata gctgcactcg tcctctacct gcgtttccac
      421 aacatctaca cggagaacag gcgcttcccc ctggtggact tctgtgtgac tgtctccttc
      481 acctttttct ggctggtagc tgcagctgcc tggggcaagg gcctgactga cgtcaagggg
      541 gccacacgac catccagcct gacagcagcc atgtctgtgt gccatggaga ggaggcggtg
      601 tgcagtgccg gggccacgcc ctccatggga ctggccaaca tctccgtgct ctttggcttt
      661 atcagcttct tcctgtgggc cgggaactgt tggtttgtgt tcaaggagac cccgtggcac
      721 gggcagggcc aggaccaggg ccagggcgcc ggccaggaga gcgcagctga gcagggagcg
      781 gtggagaagc agtaa
//
LOCUS       XM_032604422             624 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A9 (S100A9),
            mRNA.
ACCESSION   XM_032604422
VERSION     XM_032604422.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..624
                     /gene="S100A9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739746"
     CDS             142..528
                     /gene="S100A9"
                     /codon_start=1
                     /product="protein S100-A9"
                     /protein_id="XP_032460313.1"
                     /db_xref="GeneID:116739746"
                     /translation="MADQLSQLESSIETIINIFHQYSIRLQPPDTLNKKEFKELVKKE
                     LPNFLKKETKDDKAINEIMEDLDTDVNKELNFQEFSVLVGKLTEASHEEMHKTAPPGV
                     GHRHGPGFREGGSGHGHSHGNHGHSH"
     misc_feature    157..423
                     /gene="S100A9"
                     /note="Calgranulins: S-100 domain found in proteins
                     belonging to the Calgranulin subgroup of the S100 family
                     of EF-hand calcium-modulated proteins, including S100A8,
                     S100A9, and S100A12 . Note that the S-100 hierarchy, to
                     which this Calgranulin group belongs; Region:
                     calgranulins; cd05030"
                     /db_xref="CDD:240156"
     misc_feature    order(157..159,175..177,181..183,199..201,271..273,
                     277..279,367..369,391..393,397..399)
                     /gene="S100A9"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240156"
     misc_feature    order(208..210,223..225,232..234,247..249,340..342,
                     346..348,352..354,358..360,373..375)
                     /gene="S100A9"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240156"
ORIGIN      
        1 ctcagggtta ccacactgct tacctgtgaa gcaatcttcc cgcaagaggg ctgagtttct
       61 cagccagagg cctataaata ctgggccccc atctttctgt caaacccctc tgtgtgactc
      121 ctgggcttgg agtgcgggaa gatggctgac caactgtcgc agctggaaag cagcatagaa
      181 accatcatca atatcttcca ccagtactct atacggctgc agcccccgga taccctgaac
      241 aagaaagaat tcaaagagct ggtgaaaaaa gagctgccaa actttctcaa gaaggagaca
      301 aaggatgaca aagccataaa cgagatcatg gaggacctgg acacagatgt aaacaaggag
      361 ctgaacttcc aggagttctc cgtgctggtg ggcaagctga cggaagcctc ccacgaggag
      421 atgcacaaga cggcaccccc aggagtaggc cacaggcacg ggccaggctt cagggagggt
      481 ggttcaggcc acggccacag ccatggcaat cacggccaca gccactaatc aggtcaggcc
      541 acaggcccct gcccacctag ggccacgggg ctgccttagc tgcagggcag ggagatggga
      601 gtgaaatata aagtcttcct ccga
//
LOCUS       XM_032604435            1714 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphthamide biosynthesis 5 (DPH5),
            transcript variant X1, mRNA.
ACCESSION   XM_032604435
VERSION     XM_032604435.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1714
                     /gene="DPH5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739752"
     CDS             157..1014
                     /gene="DPH5"
                     /codon_start=1
                     /product="diphthine methyl ester synthase"
                     /protein_id="XP_032460326.1"
                     /db_xref="GeneID:116739752"
                     /translation="MLYMIGLGLGDAKDITVKGLEVLRRCSRVYLEAYTSVLTVGKEV
                     LEEFYGRKLILADREEVEQEANNILKDADISDVAFLVVGDPFGATTHSDLILRATKLG
                     IPYRVIHNASIMNAVGCCGLQLYRFGETVSVVFWTDTWRPESFFDKVKKNRQNGMHTL
                     CLLDIKVKEQSLENLIKGRKIYEPPRYMSVNQAAQQLLEIVQNQRIRGEEPAVTEETL
                     CVGLARVGAEDQKIAAGTLQQMCTVDLGGPLHSLIITGGSLHPLEMEMLSLFSIPEKS
                     SESQSIDGL"
     misc_feature    157..972
                     /gene="DPH5"
                     /note="diphthine synthase; Provisional; Region: PTZ00175"
                     /db_xref="CDD:185500"
     misc_feature    order(181..183,259..261,403..408,415..423,490..495,
                     640..645,820..822,826..831,901..909)
                     /gene="DPH5"
                     /note="SAM binding site [chemical binding]; other site"
                     /db_xref="CDD:381174"
     misc_feature    order(181..183,346..348,400..408,415..423,490..495,
                     505..507,550..552,637..642,820..831,901..909)
                     /gene="DPH5"
                     /note="putative active site [active]"
                     /db_xref="CDD:381174"
     misc_feature    order(181..183,187..189,193..210,214..219,406..408,
                     412..417,421..423,430..435,439..444,451..456,472..492,
                     496..504,508..513,517..519,523..531,535..546,607..612,
                     616..618,625..627,832..834,841..843)
                     /gene="DPH5"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381174"
ORIGIN      
        1 gcggcaccgt aggtgaggct gcagcgtgga tcctcgctcc gcgcaaatcc ttcgggtggg
       61 caacttcttc tgggaaaccg cggcagatag gagtttgggg aggacggtga cccagctacg
      121 attctctcaa aggtcgccct ccccctggac tttgaaatgc tttacatgat cggtttgggc
      181 ctgggagatg ccaaggacat cacagtcaag gggctggaag ttctaagacg ctgcagtcga
      241 gtgtatctgg aagcctatac ctcagtcctg actgtaggga aggaagttct ggaagagttt
      301 tatggaagaa aattgattct cgctgataga gaagaagtgg aacaggaagc aaataatatt
      361 ttaaaggatg ctgatatcag tgatgtcgca ttccttgtag ttggtgatcc atttggagct
      421 acaacacata gtgatcttat tctgagagca acaaaactgg gaatccctta ccgagttatt
      481 cacaatgctt ccataatgaa tgctgtaggc tgctgcggtt tacagttgta taggtttgga
      541 gagacagtat ctgttgtttt ttggacagac acttggagac cagaaagctt ttttgacaaa
      601 gtgaagaaga acagacaaaa cggcatgcac acattatgct tactagacat caaagtaaag
      661 gagcagtctt tggaaaatct aatcaaggga agaaagatct atgaacctcc tcgttatatg
      721 agtgtaaacc aagcagccca gcaacttctg gagattgttc agaatcagcg aatacgagga
      781 gaagaaccag cagtcaccga ggagacactc tgtgttggct tagccagggt tggagctgaa
      841 gaccagaaaa ttgcagcagg cactttgcag caaatgtgta ctgtggactt gggaggacca
      901 ttacattcct tgattatcac aggaggcagc ttgcatccac tggagatgga gatgctaagt
      961 ctgttttcca tcccagaaaa gagctcagaa tcccaaagca ttgatggact ctgaacttag
     1021 gcattttatt gttagatgtt aatttcagtt atatatgcgc atacacatat ttgtataaca
     1081 aatcaaacag gtcttttggt ttacctagta tgtataaaac gagtgaccaa gaagaaagat
     1141 gctgactcaa cagtgcttgg tttcctttgg caatgagttt tttccctatg atgtcatcgt
     1201 ttttgctgct attttggcag tttttcagga tgtacataca tggagcagac catgctggaa
     1261 aacttagaga tagacatcca tcgacagaat catttaaaag caatttttgt ttatgaaatc
     1321 agttgataaa aggtggaact ttcttctttc ttaaaaagtc agatgtcctg actgcaagat
     1381 aagttgtcct gacagcattt ggtattaatg catataaaca gaggtgggaa gaataagtcc
     1441 ccacccaaca gtcctactta cttaaagctc agctgagcac atgccacaac atgacatcat
     1501 tttgaattgc cttgtcttgt ttagctgatg tcctaattat gtgcctcata ttctgctgta
     1561 ttttggaggt tatataattg ttgaattata aatgttcagc cagccatgta cagttgctgt
     1621 ctggttttaa gtagcatctt tcacatccaa gctgacaaat ggaaaacttg ctgactacaa
     1681 aataaaatct ttaaaaattt acgtttgaaa acaa
//
LOCUS       XM_032604445            1623 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphthamide biosynthesis 5 (DPH5),
            transcript variant X2, mRNA.
ACCESSION   XM_032604445
VERSION     XM_032604445.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1623
                     /gene="DPH5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739752"
     CDS             66..923
                     /gene="DPH5"
                     /codon_start=1
                     /product="diphthine methyl ester synthase"
                     /protein_id="XP_032460336.1"
                     /db_xref="GeneID:116739752"
                     /translation="MLYMIGLGLGDAKDITVKGLEVLRRCSRVYLEAYTSVLTVGKEV
                     LEEFYGRKLILADREEVEQEANNILKDADISDVAFLVVGDPFGATTHSDLILRATKLG
                     IPYRVIHNASIMNAVGCCGLQLYRFGETVSVVFWTDTWRPESFFDKVKKNRQNGMHTL
                     CLLDIKVKEQSLENLIKGRKIYEPPRYMSVNQAAQQLLEIVQNQRIRGEEPAVTEETL
                     CVGLARVGAEDQKIAAGTLQQMCTVDLGGPLHSLIITGGSLHPLEMEMLSLFSIPEKS
                     SESQSIDGL"
     misc_feature    66..881
                     /gene="DPH5"
                     /note="diphthine synthase; Provisional; Region: PTZ00175"
                     /db_xref="CDD:185500"
     misc_feature    order(90..92,168..170,312..317,324..332,399..404,549..554,
                     729..731,735..740,810..818)
                     /gene="DPH5"
                     /note="SAM binding site [chemical binding]; other site"
                     /db_xref="CDD:381174"
     misc_feature    order(90..92,255..257,309..317,324..332,399..404,414..416,
                     459..461,546..551,729..740,810..818)
                     /gene="DPH5"
                     /note="putative active site [active]"
                     /db_xref="CDD:381174"
     misc_feature    order(90..92,96..98,102..119,123..128,315..317,321..326,
                     330..332,339..344,348..353,360..365,381..401,405..413,
                     417..422,426..428,432..440,444..455,516..521,525..527,
                     534..536,741..743,750..752)
                     /gene="DPH5"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381174"
ORIGIN      
        1 tgaggctgca gcgtggatcc tcgctccgcg caaatccttc ggtcgccctc cccctggact
       61 ttgaaatgct ttacatgatc ggtttgggcc tgggagatgc caaggacatc acagtcaagg
      121 ggctggaagt tctaagacgc tgcagtcgag tgtatctgga agcctatacc tcagtcctga
      181 ctgtagggaa ggaagttctg gaagagtttt atggaagaaa attgattctc gctgatagag
      241 aagaagtgga acaggaagca aataatattt taaaggatgc tgatatcagt gatgtcgcat
      301 tccttgtagt tggtgatcca tttggagcta caacacatag tgatcttatt ctgagagcaa
      361 caaaactggg aatcccttac cgagttattc acaatgcttc cataatgaat gctgtaggct
      421 gctgcggttt acagttgtat aggtttggag agacagtatc tgttgttttt tggacagaca
      481 cttggagacc agaaagcttt tttgacaaag tgaagaagaa cagacaaaac ggcatgcaca
      541 cattatgctt actagacatc aaagtaaagg agcagtcttt ggaaaatcta atcaagggaa
      601 gaaagatcta tgaacctcct cgttatatga gtgtaaacca agcagcccag caacttctgg
      661 agattgttca gaatcagcga atacgaggag aagaaccagc agtcaccgag gagacactct
      721 gtgttggctt agccagggtt ggagctgaag accagaaaat tgcagcaggc actttgcagc
      781 aaatgtgtac tgtggacttg ggaggaccat tacattcctt gattatcaca ggaggcagct
      841 tgcatccact ggagatggag atgctaagtc tgttttccat cccagaaaag agctcagaat
      901 cccaaagcat tgatggactc tgaacttagg cattttattg ttagatgtta atttcagtta
      961 tatatgcgca tacacatatt tgtataacaa atcaaacagg tcttttggtt tacctagtat
     1021 gtataaaacg agtgaccaag aagaaagatg ctgactcaac agtgcttggt ttcctttggc
     1081 aatgagtttt ttccctatga tgtcatcgtt tttgctgcta ttttggcagt ttttcaggat
     1141 gtacatacat ggagcagacc atgctggaaa acttagagat agacatccat cgacagaatc
     1201 atttaaaagc aatttttgtt tatgaaatca gttgataaaa ggtggaactt tcttctttct
     1261 taaaaagtca gatgtcctga ctgcaagata agttgtcctg acagcatttg gtattaatgc
     1321 atataaacag aggtgggaag aataagtccc cacccaacag tcctacttac ttaaagctca
     1381 gctgagcaca tgccacaaca tgacatcatt ttgaattgcc ttgtcttgtt tagctgatgt
     1441 cctaattatg tgcctcatat tctgctgtat tttggaggtt atataattgt tgaattataa
     1501 atgttcagcc agccatgtac agttgctgtc tggttttaag tagcatcttt cacatccaag
     1561 ctgacaaatg gaaaacttgc tgactacaaa ataaaatctt taaaaattta cgtttgaaaa
     1621 caa
//
LOCUS       XM_032604454            1653 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphthamide biosynthesis 5 (DPH5),
            transcript variant X3, mRNA.
ACCESSION   XM_032604454
VERSION     XM_032604454.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1653
                     /gene="DPH5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739752"
     CDS             96..953
                     /gene="DPH5"
                     /codon_start=1
                     /product="diphthine methyl ester synthase"
                     /protein_id="XP_032460345.1"
                     /db_xref="GeneID:116739752"
                     /translation="MLYMIGLGLGDAKDITVKGLEVLRRCSRVYLEAYTSVLTVGKEV
                     LEEFYGRKLILADREEVEQEANNILKDADISDVAFLVVGDPFGATTHSDLILRATKLG
                     IPYRVIHNASIMNAVGCCGLQLYRFGETVSVVFWTDTWRPESFFDKVKKNRQNGMHTL
                     CLLDIKVKEQSLENLIKGRKIYEPPRYMSVNQAAQQLLEIVQNQRIRGEEPAVTEETL
                     CVGLARVGAEDQKIAAGTLQQMCTVDLGGPLHSLIITGGSLHPLEMEMLSLFSIPEKS
                     SESQSIDGL"
     misc_feature    96..911
                     /gene="DPH5"
                     /note="diphthine synthase; Provisional; Region: PTZ00175"
                     /db_xref="CDD:185500"
     misc_feature    order(120..122,198..200,342..347,354..362,429..434,
                     579..584,759..761,765..770,840..848)
                     /gene="DPH5"
                     /note="SAM binding site [chemical binding]; other site"
                     /db_xref="CDD:381174"
     misc_feature    order(120..122,285..287,339..347,354..362,429..434,
                     444..446,489..491,576..581,759..770,840..848)
                     /gene="DPH5"
                     /note="putative active site [active]"
                     /db_xref="CDD:381174"
     misc_feature    order(120..122,126..128,132..149,153..158,345..347,
                     351..356,360..362,369..374,378..383,390..395,411..431,
                     435..443,447..452,456..458,462..470,474..485,546..551,
                     555..557,564..566,771..773,780..782)
                     /gene="DPH5"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381174"
ORIGIN      
        1 actcaccaac gggttcgcca agctggcagc tcacgaggga ggcagctggt gaaactacgg
       61 ccgaatgaaa agtcgccctc cccctggact ttgaaatgct ttacatgatc ggtttgggcc
      121 tgggagatgc caaggacatc acagtcaagg ggctggaagt tctaagacgc tgcagtcgag
      181 tgtatctgga agcctatacc tcagtcctga ctgtagggaa ggaagttctg gaagagtttt
      241 atggaagaaa attgattctc gctgatagag aagaagtgga acaggaagca aataatattt
      301 taaaggatgc tgatatcagt gatgtcgcat tccttgtagt tggtgatcca tttggagcta
      361 caacacatag tgatcttatt ctgagagcaa caaaactggg aatcccttac cgagttattc
      421 acaatgcttc cataatgaat gctgtaggct gctgcggttt acagttgtat aggtttggag
      481 agacagtatc tgttgttttt tggacagaca cttggagacc agaaagcttt tttgacaaag
      541 tgaagaagaa cagacaaaac ggcatgcaca cattatgctt actagacatc aaagtaaagg
      601 agcagtcttt ggaaaatcta atcaagggaa gaaagatcta tgaacctcct cgttatatga
      661 gtgtaaacca agcagcccag caacttctgg agattgttca gaatcagcga atacgaggag
      721 aagaaccagc agtcaccgag gagacactct gtgttggctt agccagggtt ggagctgaag
      781 accagaaaat tgcagcaggc actttgcagc aaatgtgtac tgtggacttg ggaggaccat
      841 tacattcctt gattatcaca ggaggcagct tgcatccact ggagatggag atgctaagtc
      901 tgttttccat cccagaaaag agctcagaat cccaaagcat tgatggactc tgaacttagg
      961 cattttattg ttagatgtta atttcagtta tatatgcgca tacacatatt tgtataacaa
     1021 atcaaacagg tcttttggtt tacctagtat gtataaaacg agtgaccaag aagaaagatg
     1081 ctgactcaac agtgcttggt ttcctttggc aatgagtttt ttccctatga tgtcatcgtt
     1141 tttgctgcta ttttggcagt ttttcaggat gtacatacat ggagcagacc atgctggaaa
     1201 acttagagat agacatccat cgacagaatc atttaaaagc aatttttgtt tatgaaatca
     1261 gttgataaaa ggtggaactt tcttctttct taaaaagtca gatgtcctga ctgcaagata
     1321 agttgtcctg acagcatttg gtattaatgc atataaacag aggtgggaag aataagtccc
     1381 cacccaacag tcctacttac ttaaagctca gctgagcaca tgccacaaca tgacatcatt
     1441 ttgaattgcc ttgtcttgtt tagctgatgt cctaattatg tgcctcatat tctgctgtat
     1501 tttggaggtt atataattgt tgaattataa atgttcagcc agccatgtac agttgctgtc
     1561 tggttttaag tagcatcttt cacatccaag ctgacaaatg gaaaacttgc tgactacaaa
     1621 ataaaatctt taaaaattta cgtttgaaaa caa
//
LOCUS       XR_004345701            2046 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739763
            (LOC116739763), ncRNA.
ACCESSION   XR_004345701
VERSION     XR_004345701.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2046
                     /gene="LOC116739763"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 93% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739763"
     ncRNA           1..2046
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739763"
                     /product="uncharacterized LOC116739763"
                     /db_xref="GeneID:116739763"
ORIGIN      
        1 agctggaagt gaggggtcgt tccgtcagct ggctgggcga ccttgtccca ccgcgattaa
       61 gaatgatacc caggctgctg gggcggagag gcggaaggtc agccggtcgg agggagtctg
      121 accagtgccc acggcatgac ctttgggaac ggacgaggct tgcccgcgat cccctatgtt
      181 taagccccca gcctgggacc ggctaagtgc cggagctctt cgcccgctag gagagccggc
      241 cgcgaagttg gcccgaggag ccccacgccc tccccctctc ctcctccgga cgcactaggg
      301 ggtggcgggt ggaaggggtt tccctagtct gccccgggat tgcccaagtg cgcacgttcc
      361 catcctcgcc ttttcattcg gccgtagttt caccagctgc ctccctcgtg agctgccagc
      421 ttggcgaacc cgttggtaac acaaggaagc tctttctgga tgcttgactg gtctccagat
      481 tccacttaaa tctcagttac tatttgacct ctggtatctc cattaaaagg tatttgtagc
      541 tggatgaaga aataaagctt taaatgaaca gcttccataa cagcaataat tatagtagtg
      601 accatatact gagcaattac agtgcaccag gaatatggct atgagcactt tatacttatc
      661 tcattttatc ctctccacaa cccaatgagg taaactacca ttatttttac tgtaattata
      721 taatattgtt atataataaa atgcttagag tatatgtaca gtcattatac gatatttata
      781 taataaaaat acaactctgg atatgtgaca agttgcataa atatttacat gaaaacatga
      841 aggagttaat tagcaatttt ctctctgcag cctttagccc ttgaagagct cctgggaaaa
      901 gaagagctga gctctgtcag aggtggtttc acttgactta gacagttttc tttcttccca
      961 aaatgattca gtctcagaat tgttctttaa tctttaatat ctccattaag aagagtttct
     1021 gtcaagtact tcaaaagtat acaatgtgag ggagcattgc tgatcccctg ctggtgagtg
     1081 aaacagggga ggtagattcc tcagccagtc cctggatgtg ccctcagaaa tgcaggctga
     1141 tgtgcaagca catgccaaga acccatctcc tttctacctc gttactctct tttcattggg
     1201 tttctgtgtg tcctttgtag tccaaccagc aagttacttt gagacaaaga gaaatccacc
     1261 accgggccaa tctaggaata aattagttcc cttgctaaaa aaaatacttg ggaaccttta
     1321 aatattgaac ttgtgggtca aaaatttgga attcctttcc tctcagatta aaatcgtttg
     1381 actgtttttt tttttttttt tttgcggtac gcgggcctct cactgttgtg gcctctcccg
     1441 ttgcgcagca cagcctgtgc gtcctcagcg gccatggttc acgggcccag ccgctccgcg
     1501 gcatgtggga tcttcccgga ccagggcacg aacccgtgtc ccctgcagcg gcaatcggac
     1561 tctcaaccac tgcgccacca ggccagtcat aatgagacag gatactgcat aagccaagac
     1621 cacacaaagg attgatggta caccctaagg gtggttattg cgatgaagct gtgatatacg
     1681 cactgaaaga atgtgatgct catcatactg gtatggccaa aacacatggg tatgaaggtc
     1741 tcttgggaga agccatccag gacagtgcca tgaaatgtga ggatctgtga atcatcacaa
     1801 aattttagct cagtaactat ggctttgaaa acactgtaca gtcctgtctg aaatcctgtg
     1861 gcttggagta cataggtgtg cactgtagac atcattggtc attatcatct tattagagat
     1921 tcaaccattc ttttatgtat ttttggagga ttaaataatt ttggatgtag tgtgaccctg
     1981 agcatggcag atgtcagaag aaatattgtt acgtgtttgt aaagaaataa attttattgt
     2041 gctttg
//
LOCUS       XM_032604474            5223 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus estrogen related receptor gamma (ESRRG),
            transcript variant X1, mRNA.
ACCESSION   XM_032604474
VERSION     XM_032604474.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5223
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5223
                     /gene="ESRRG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 50 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739767"
     CDS             131..1507
                     /gene="ESRRG"
                     /codon_start=1
                     /product="estrogen-related receptor gamma isoform X1"
                     /protein_id="XP_032460365.1"
                     /db_xref="GeneID:116739767"
                     /translation="MDSVELCLPESFSLHYEEELLCRMSNKDRHIDSSCSSFIKTEPS
                     SPASLTDSVNHHSPGGSSDASGSYSSTMNGHQNGLDSPPLYPSAPILGGSGPVRKLYD
                     DCSSTIVEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNI
                     EYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAEN
                     SPYLNPQLVQPAKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADREL
                     VVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDE
                     DQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQ
                     DVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLF
                     LEMLEAKV"
     misc_feature    494..784
                     /gene="ESRRG"
                     /note="DNA-binding domain of estrogen related receptors
                     (ERR) is composed of two C4-type zinc fingers; Region:
                     NR_DBD_ERR; cd07170"
                     /db_xref="CDD:143544"
     misc_feature    order(506..508,542..553,566..571,575..583,587..592,
                     599..601,659..664,671..673,680..682,722..727,734..757)
                     /gene="ESRRG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143544"
     misc_feature    order(512..514,521..523,563..565,572..574,620..622,
                     638..640,668..670,677..679)
                     /gene="ESRRG"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143544"
     misc_feature    839..1498
                     /gene="ESRRG"
                     /note="The ligand binding domain of estrogen
                     receptor-related nuclear receptors; Region: NR_LBD_ERR;
                     cd06946"
                     /db_xref="CDD:132744"
     misc_feature    order(923..925,932..934,944..946,953..955,1067..1069,
                     1106..1108,1118..1120,1148..1156,1433..1435,1442..1444,
                     1448..1450)
                     /gene="ESRRG"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132744"
     misc_feature    order(968..970,1010..1012,1019..1024,1031..1036,
                     1472..1477,1484..1489)
                     /gene="ESRRG"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132744"
     misc_feature    1256..1258
                     /gene="ESRRG"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132744"
ORIGIN      
        1 gagctctggt cccaactggc tgtgcctata ggcttgtcac caggagaaca tttgtgttaa
       61 ttgcgctctg ctctgtcaag gaaactttga tttatagcgg gggtgcgcaa ataatggttg
      121 ccggtcgcac atggattcgg tagaactttg ccttcctgaa tctttttccc tgcactacga
      181 ggaagagctt ctctgcagaa tgtcaaacaa agatcgacac attgattcca gctgttcgtc
      241 cttcatcaag acggaaccct ccagcccggc ctccctgacg gacagcgtca accaccacag
      301 cccaggtggc tcttcagacg ccagcgggag ctacagttca accatgaatg gccatcagaa
      361 cggacttgac tcgccacctc tctacccttc tgctcctatc ctaggaggta gtgggcctgt
      421 ccggaaactg tacgatgact gctccagcac cattgttgaa gacccccaga ccaagtgcga
      481 atacatgctc aactcgatgc ccaagagact gtgtttagtg tgcggtgaca tcgcgtctgg
      541 gtaccactat ggggtagcat cctgtgaagc ctgcaaggca ttcttcaaga ggacaattca
      601 aggtaatata gaatatagct gccctgccac gaatgaatgt gaaatcacaa agcgcagacg
      661 taaatcctgc caggcttgcc gcttcatgaa gtgtttaaaa gtgggcatgc tcaaagaagg
      721 agtgcgtctt gacagagtac gtggaggtcg gcagaagtac aagcgcagaa tagatgcgga
      781 gaacagcccg tacctgaacc ctcagttggt tcagccagcc aaaaagccat ataacaagat
      841 tgtctcacat ttattggtgg ctgaaccgga gaagatctat gccatgcccg accctactgt
      901 tcccgacagt gacatcaaag ccctcactac actgtgcgac ttggccgatc gagaattggt
      961 ggttatcatt ggatgggcga agcatattcc aggcttctcc acgctgtccc tggcggacca
     1021 gatgagcctt ctgcagagtg cttggatgga aattttgatc cttggtgtcg tgtaccgatc
     1081 tctttccttt gaggatgaac ttgtctatgc agacgattat ataatggatg aagaccagtc
     1141 taaattagca ggccttcttg acctaaataa tgctatcctg cagctggtaa agaaatacaa
     1201 gagcatgaag ctggagaaag aagaatttgt caccctcaaa gcaatcgctc ttgctaattc
     1261 agactccatg cacatagaag acgtcgaagc cgttcagaag cttcaggatg tcttacatga
     1321 ggccttgcag gattatgagg ccggccagca catggaagac cctcgcaggg ccggtaagat
     1381 gctgatgacg ctgccgctcc tgaggcagac ctctaccaag gccgtgcagc atttctacaa
     1441 catcaaactg gaaggcaaag tccccatgca caaacttttt ttggaaatgc tggaggccaa
     1501 ggtctgacta aaagcttccc cgggcatcct atcctgcacg ccgaaaaagg gaaaaataaa
     1561 cccaagagtg atgtcaaaaa aacttagagt ttagttaaca acatcaaaaa tcaagtaaga
     1621 ctgcactgat aatttagcag caagactatg aagcagcttt cagattcctc tgtatcctga
     1681 tgagtttttt tctaccttaa tctcatcttt tctccgtttc ttttgctctt tatttttttt
     1741 tctcccgccc tattctcttt ctccttcgtt tcttgcttcc ttcattgctg gttccccact
     1801 ctctcctttc cttccttcct tccttccctc ccaccctcct tcctttcttc tactttcctc
     1861 cctcttttct cattcttccc ctttctttta agttttaata gctctggtta taagaaaatg
     1921 ttgcggcctt tcctttcttt tcctttccgt ccctccctcc cttccttctt ccttcctcct
     1981 tcctccttcc ttccttcttt ccttccttcc gtctttcctt ctgctgctga acttttaaaa
     2041 gaagtctcta attggagagt gatggaagcc agccctgcca aaggatggag atccataata
     2101 tggataccag tgaacttctt gtgaaccata acatccccaa tgactaagga atcaaagaga
     2161 gagaaccatg gtacctacaa catacataca caaattgcaa catacacaaa ctgactgagt
     2221 gcagtattag attccactgg agcagcctct aattagacga cgtacgcaac gtcgcatcag
     2281 ctgcctctta tcattgcttt tccatctaga tcagttacag ccatttgatt ccttaattgt
     2341 tttttcaagt cttccaggta tttgttagtt tagcgactat gtaacttttt cagggaatag
     2401 tttaagcttt attcattcat gcaatactaa agagaaataa gaatactgca attctgtgct
     2461 ggctttgaac aattatgaac aataatgaag gacaaatgaa tcctgaagga agatttttta
     2521 aaaatgtttc atttcttctt acaaatggag atttttttgt accagcttta ccacttttca
     2581 gccatttatt aatatgggaa tttaacttac tcaagcaata gttgaaggga aggtgcatat
     2641 tatcacggat gcaatttatg ttgtgtgcca gtctggtccc aaacatcaat ttcttaacat
     2701 gaactccagt ttacctaaat gttcactgac acaaaggatt agattacacc tgcagtggct
     2761 ccgagtggtc acgtatataa gcaccacaca tggaatacag atccgtagaa tgatcaggag
     2821 cgcccctctc tacctgggag gtccagttgc cgtaggattt ctagctgcca cggtgggtta
     2881 ggaatgagat actgcctgtt gcaaagttac agaccttttc tcagaaggag ctgtgagcca
     2941 gtattcaccc aagaggcaat aaggcaaatg ccagaatttg aaaacaaaaa aacaaaaaca
     3001 tcaaagacag cagacgcctg accaaatgct aaaacctaat ctctatgggt tgattcattt
     3061 aggaatgttt gtttaaatta atctgcagtt tttaaccaag agctaagcca atctatgtgc
     3121 ttttcaacca gtatcgtcac agcaagaaag tcagtcaggt cccagactgt taagaggtgt
     3181 aatctaatga agaaatcaat tagacacccc caaaatctac aatcgcttga ataaccgata
     3241 aacagtaacc tccatcaaat gctataccaa tggaccagtg ttagtagctg ctccctgtat
     3301 tatgtgaaca gtctgattct atgtacacag atgtaattaa aattgtaatc ctaacaaaca
     3361 aaagaaatgt agttcagctt ttcaatgttt catgtttgct gtgctttcct gaattttatg
     3421 ttgcattcaa agactgttgt cttgttgttc gtgtggtgtt tggattcttg tggtgtgtgc
     3481 ttttagacac agggtagaat tagagacaat attggatgta caattcctca ggagactaca
     3541 gtagtatatt ctattcctta ccattaataa ggttcttcct aataagaatt aagagattga
     3601 aactccaaac aagtattcat tatgaacaga tacacatcaa aatcataatg atattttcaa
     3661 aacaaggaat aatttctcta atggtttatt atagaatacc aatgtatagc ttagaaataa
     3721 aactttgaat atttcaagaa tatagataag tctaattttt aaatgctgta tatatggctt
     3781 tcactcagtc atctctcaga tgttgttata aactcgctct gtgttgttgc gaaacatttt
     3841 ggtgcggaca cgtttccaaa actattgcta ctttgtgtgc tttaaacaaa ataccttggg
     3901 ttgatgtttc atcagcctag tgctaggaat actgtgtatc tatcattagc tatatgggac
     3961 tataattgta gattgtggtt tctcagtaga gaagtgactg tagtgtgatt ctagataaat
     4021 catcattagc aattcattca gatggtcaat aacttgaaat ttatagctgt gataggagtt
     4081 cagaaattgg cacatccctt gaaaaataac aacagaaaat acaactcctg ggaaaaaaaa
     4141 aaaaaggtgc tgattctcta agattattta tatatgtaag tgtttaaaaa agattatttt
     4201 ccagacagtt tgtgcagggt ttaagttact actattcaac cacactatat atataaataa
     4261 aatatataca atatatacat tgttttcact gtatcacatt aaagtacttg ggcttaagga
     4321 gtaaaagcca accaactgaa aacgcaagat ggagagatgt aaaaagaacg aagaacaatt
     4381 tttagttttc agtttaattg actctcagca ttgcaagaga acaagtatct cacaaatagg
     4441 aaacacaact aaaatttaga tctaaaagaa ctgcacgggc tttagggtaa atgcttcatc
     4501 ttaaacctcg cttgaggtaa gtttttctca agtttcaagc aagaccattt acttaatgtg
     4561 aagtattgga aagttatcaa ggtgtatgtt tagccgtatg atttttaatg ttattttgct
     4621 tcttttaggt ttgttcttat tttaaaggca atatgattgt gtgactacct gtagtttaca
     4681 cttgtgtttc aatcagatca gattgttgta tttattccac tattttgcat ttaaatgata
     4741 acataaaaga tataaaaaat ttaaaactgc tatttttctt atagaagaga aaatgagtgt
     4801 tggtgattgt attttaatta tttaagcgtc tctgtttacc tgcctaggaa acatttttat
     4861 ggcagtctta tgtgcacaag atcgttaaaa ggacaaaata aattttacac tgcttataat
     4921 aatccaggag ttgcattata gacagtagta aaaagaataa taataataaa accttgtcta
     4981 tagctgtaga tgggcttcac atctgtaaag caatcaattg tatatttttg tgatgtgtac
     5041 catactgtgt gctccagcaa atgtccattt gtgtaaatgt atttatttta tattgtatat
     5101 attgttaaat gcaaaaggga gatatgattc tgtaactcca atcagttcag atgtgtaact
     5161 caaattatta tgcctttcag gatgacggta gagcaatatt aaacatgctt ccacttttga
     5221 ttg
//
LOCUS       XM_032604480            5198 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus estrogen related receptor gamma (ESRRG),
            transcript variant X2, mRNA.
ACCESSION   XM_032604480
VERSION     XM_032604480.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5198
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5198
                     /gene="ESRRG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 46 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739767"
     CDS             160..1482
                     /gene="ESRRG"
                     /codon_start=1
                     /product="estrogen-related receptor gamma isoform X2"
                     /protein_id="XP_032460371.1"
                     /db_xref="GeneID:116739767"
                     /translation="MLLCRMSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSS
                     DASGSYSSTMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYML
                     NSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRK
                     SCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNK
                     IVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL
                     ADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQL
                     VKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMED
                     PRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV"
     misc_feature    469..759
                     /gene="ESRRG"
                     /note="DNA-binding domain of estrogen related receptors
                     (ERR) is composed of two C4-type zinc fingers; Region:
                     NR_DBD_ERR; cd07170"
                     /db_xref="CDD:143544"
     misc_feature    order(481..483,517..528,541..546,550..558,562..567,
                     574..576,634..639,646..648,655..657,697..702,709..732)
                     /gene="ESRRG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143544"
     misc_feature    order(487..489,496..498,538..540,547..549,595..597,
                     613..615,643..645,652..654)
                     /gene="ESRRG"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143544"
     misc_feature    814..1473
                     /gene="ESRRG"
                     /note="The ligand binding domain of estrogen
                     receptor-related nuclear receptors; Region: NR_LBD_ERR;
                     cd06946"
                     /db_xref="CDD:132744"
     misc_feature    order(898..900,907..909,919..921,928..930,1042..1044,
                     1081..1083,1093..1095,1123..1131,1408..1410,1417..1419,
                     1423..1425)
                     /gene="ESRRG"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132744"
     misc_feature    order(943..945,985..987,994..999,1006..1011,1447..1452,
                     1459..1464)
                     /gene="ESRRG"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132744"
     misc_feature    1231..1233
                     /gene="ESRRG"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132744"
ORIGIN      
        1 gggcgggctc gctggaggcg caggcaggct ccggggccgg gctccctagc cgggtcagca
       61 atcggagcgg gaaggccagg acaggaagct gggcacctcg cgggcagccc cgaaaccacc
      121 cactggcagt agttgagaga gcggctctgc agtccgacca tgcttctctg cagaatgtca
      181 aacaaagatc gacacattga ttccagctgt tcgtccttca tcaagacgga accctccagc
      241 ccggcctccc tgacggacag cgtcaaccac cacagcccag gtggctcttc agacgccagc
      301 gggagctaca gttcaaccat gaatggccat cagaacggac ttgactcgcc acctctctac
      361 ccttctgctc ctatcctagg aggtagtggg cctgtccgga aactgtacga tgactgctcc
      421 agcaccattg ttgaagaccc ccagaccaag tgcgaataca tgctcaactc gatgcccaag
      481 agactgtgtt tagtgtgcgg tgacatcgcg tctgggtacc actatggggt agcatcctgt
      541 gaagcctgca aggcattctt caagaggaca attcaaggta atatagaata tagctgccct
      601 gccacgaatg aatgtgaaat cacaaagcgc agacgtaaat cctgccaggc ttgccgcttc
      661 atgaagtgtt taaaagtggg catgctcaaa gaaggagtgc gtcttgacag agtacgtgga
      721 ggtcggcaga agtacaagcg cagaatagat gcggagaaca gcccgtacct gaaccctcag
      781 ttggttcagc cagccaaaaa gccatataac aagattgtct cacatttatt ggtggctgaa
      841 ccggagaaga tctatgccat gcccgaccct actgttcccg acagtgacat caaagccctc
      901 actacactgt gcgacttggc cgatcgagaa ttggtggtta tcattggatg ggcgaagcat
      961 attccaggct tctccacgct gtccctggcg gaccagatga gccttctgca gagtgcttgg
     1021 atggaaattt tgatccttgg tgtcgtgtac cgatctcttt cctttgagga tgaacttgtc
     1081 tatgcagacg attatataat ggatgaagac cagtctaaat tagcaggcct tcttgaccta
     1141 aataatgcta tcctgcagct ggtaaagaaa tacaagagca tgaagctgga gaaagaagaa
     1201 tttgtcaccc tcaaagcaat cgctcttgct aattcagact ccatgcacat agaagacgtc
     1261 gaagccgttc agaagcttca ggatgtctta catgaggcct tgcaggatta tgaggccggc
     1321 cagcacatgg aagaccctcg cagggccggt aagatgctga tgacgctgcc gctcctgagg
     1381 cagacctcta ccaaggccgt gcagcatttc tacaacatca aactggaagg caaagtcccc
     1441 atgcacaaac tttttttgga aatgctggag gccaaggtct gactaaaagc ttccccgggc
     1501 atcctatcct gcacgccgaa aaagggaaaa ataaacccaa gagtgatgtc aaaaaaactt
     1561 agagtttagt taacaacatc aaaaatcaag taagactgca ctgataattt agcagcaaga
     1621 ctatgaagca gctttcagat tcctctgtat cctgatgagt ttttttctac cttaatctca
     1681 tcttttctcc gtttcttttg ctctttattt ttttttctcc cgccctattc tctttctcct
     1741 tcgtttcttg cttccttcat tgctggttcc ccactctctc ctttccttcc ttccttcctt
     1801 ccctcccacc ctccttcctt tcttctactt tcctccctct tttctcattc ttcccctttc
     1861 ttttaagttt taatagctct ggttataaga aaatgttgcg gcctttcctt tcttttcctt
     1921 tccgtccctc cctcccttcc ttcttccttc ctccttcctc cttccttcct tctttccttc
     1981 cttccgtctt tccttctgct gctgaacttt taaaagaagt ctctaattgg agagtgatgg
     2041 aagccagccc tgccaaagga tggagatcca taatatggat accagtgaac ttcttgtgaa
     2101 ccataacatc cccaatgact aaggaatcaa agagagagaa ccatggtacc tacaacatac
     2161 atacacaaat tgcaacatac acaaactgac tgagtgcagt attagattcc actggagcag
     2221 cctctaatta gacgacgtac gcaacgtcgc atcagctgcc tcttatcatt gcttttccat
     2281 ctagatcagt tacagccatt tgattcctta attgtttttt caagtcttcc aggtatttgt
     2341 tagtttagcg actatgtaac tttttcaggg aatagtttaa gctttattca ttcatgcaat
     2401 actaaagaga aataagaata ctgcaattct gtgctggctt tgaacaatta tgaacaataa
     2461 tgaaggacaa atgaatcctg aaggaagatt ttttaaaaat gtttcatttc ttcttacaaa
     2521 tggagatttt tttgtaccag ctttaccact tttcagccat ttattaatat gggaatttaa
     2581 cttactcaag caatagttga agggaaggtg catattatca cggatgcaat ttatgttgtg
     2641 tgccagtctg gtcccaaaca tcaatttctt aacatgaact ccagtttacc taaatgttca
     2701 ctgacacaaa ggattagatt acacctgcag tggctccgag tggtcacgta tataagcacc
     2761 acacatggaa tacagatccg tagaatgatc aggagcgccc ctctctacct gggaggtcca
     2821 gttgccgtag gatttctagc tgccacggtg ggttaggaat gagatactgc ctgttgcaaa
     2881 gttacagacc ttttctcaga aggagctgtg agccagtatt cacccaagag gcaataaggc
     2941 aaatgccaga atttgaaaac aaaaaaacaa aaacatcaaa gacagcagac gcctgaccaa
     3001 atgctaaaac ctaatctcta tgggttgatt catttaggaa tgtttgttta aattaatctg
     3061 cagtttttaa ccaagagcta agccaatcta tgtgcttttc aaccagtatc gtcacagcaa
     3121 gaaagtcagt caggtcccag actgttaaga ggtgtaatct aatgaagaaa tcaattagac
     3181 acccccaaaa tctacaatcg cttgaataac cgataaacag taacctccat caaatgctat
     3241 accaatggac cagtgttagt agctgctccc tgtattatgt gaacagtctg attctatgta
     3301 cacagatgta attaaaattg taatcctaac aaacaaaaga aatgtagttc agcttttcaa
     3361 tgtttcatgt ttgctgtgct ttcctgaatt ttatgttgca ttcaaagact gttgtcttgt
     3421 tgttcgtgtg gtgtttggat tcttgtggtg tgtgctttta gacacagggt agaattagag
     3481 acaatattgg atgtacaatt cctcaggaga ctacagtagt atattctatt ccttaccatt
     3541 aataaggttc ttcctaataa gaattaagag attgaaactc caaacaagta ttcattatga
     3601 acagatacac atcaaaatca taatgatatt ttcaaaacaa ggaataattt ctctaatggt
     3661 ttattataga ataccaatgt atagcttaga aataaaactt tgaatatttc aagaatatag
     3721 ataagtctaa tttttaaatg ctgtatatat ggctttcact cagtcatctc tcagatgttg
     3781 ttataaactc gctctgtgtt gttgcgaaac attttggtgc ggacacgttt ccaaaactat
     3841 tgctactttg tgtgctttaa acaaaatacc ttgggttgat gtttcatcag cctagtgcta
     3901 ggaatactgt gtatctatca ttagctatat gggactataa ttgtagattg tggtttctca
     3961 gtagagaagt gactgtagtg tgattctaga taaatcatca ttagcaattc attcagatgg
     4021 tcaataactt gaaatttata gctgtgatag gagttcagaa attggcacat cccttgaaaa
     4081 ataacaacag aaaatacaac tcctgggaaa aaaaaaaaaa ggtgctgatt ctctaagatt
     4141 atttatatat gtaagtgttt aaaaaagatt attttccaga cagtttgtgc agggtttaag
     4201 ttactactat tcaaccacac tatatatata aataaaatat atacaatata tacattgttt
     4261 tcactgtatc acattaaagt acttgggctt aaggagtaaa agccaaccaa ctgaaaacgc
     4321 aagatggaga gatgtaaaaa gaacgaagaa caatttttag ttttcagttt aattgactct
     4381 cagcattgca agagaacaag tatctcacaa ataggaaaca caactaaaat ttagatctaa
     4441 aagaactgca cgggctttag ggtaaatgct tcatcttaaa cctcgcttga ggtaagtttt
     4501 tctcaagttt caagcaagac catttactta atgtgaagta ttggaaagtt atcaaggtgt
     4561 atgtttagcc gtatgatttt taatgttatt ttgcttcttt taggtttgtt cttattttaa
     4621 aggcaatatg attgtgtgac tacctgtagt ttacacttgt gtttcaatca gatcagattg
     4681 ttgtatttat tccactattt tgcatttaaa tgataacata aaagatataa aaaatttaaa
     4741 actgctattt ttcttataga agagaaaatg agtgttggtg attgtatttt aattatttaa
     4801 gcgtctctgt ttacctgcct aggaaacatt tttatggcag tcttatgtgc acaagatcgt
     4861 taaaaggaca aaataaattt tacactgctt ataataatcc aggagttgca ttatagacag
     4921 tagtaaaaag aataataata ataaaacctt gtctatagct gtagatgggc ttcacatctg
     4981 taaagcaatc aattgtatat ttttgtgatg tgtaccatac tgtgtgctcc agcaaatgtc
     5041 catttgtgta aatgtattta ttttatattg tatatattgt taaatgcaaa agggagatat
     5101 gattctgtaa ctccaatcag ttcagatgtg taactcaaat tattatgcct ttcaggatga
     5161 cggtagagca atattaaaca tgcttccact tttgattg
//
LOCUS       XM_032604485            5290 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus estrogen related receptor gamma (ESRRG),
            transcript variant X3, mRNA.
ACCESSION   XM_032604485
VERSION     XM_032604485.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5290
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5290
                     /gene="ESRRG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 42 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739767"
     CDS             267..1574
                     /gene="ESRRG"
                     /codon_start=1
                     /product="estrogen-related receptor gamma isoform X3"
                     /protein_id="XP_032460376.1"
                     /db_xref="GeneID:116739767"
                     /translation="MSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGS
                     YSSTMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPK
                     RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC
                     RFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL
                     LVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMS
                     LLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYK
                     SMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG
                     KMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV"
     misc_feature    561..851
                     /gene="ESRRG"
                     /note="DNA-binding domain of estrogen related receptors
                     (ERR) is composed of two C4-type zinc fingers; Region:
                     NR_DBD_ERR; cd07170"
                     /db_xref="CDD:143544"
     misc_feature    order(573..575,609..620,633..638,642..650,654..659,
                     666..668,726..731,738..740,747..749,789..794,801..824)
                     /gene="ESRRG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143544"
     misc_feature    order(579..581,588..590,630..632,639..641,687..689,
                     705..707,735..737,744..746)
                     /gene="ESRRG"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143544"
     misc_feature    906..1565
                     /gene="ESRRG"
                     /note="The ligand binding domain of estrogen
                     receptor-related nuclear receptors; Region: NR_LBD_ERR;
                     cd06946"
                     /db_xref="CDD:132744"
     misc_feature    order(990..992,999..1001,1011..1013,1020..1022,1134..1136,
                     1173..1175,1185..1187,1215..1223,1500..1502,1509..1511,
                     1515..1517)
                     /gene="ESRRG"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132744"
     misc_feature    order(1035..1037,1077..1079,1086..1091,1098..1103,
                     1539..1544,1551..1556)
                     /gene="ESRRG"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132744"
     misc_feature    1323..1325
                     /gene="ESRRG"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132744"
ORIGIN      
        1 gggcgggctc gctggaggcg caggcaggct ccggggccgg gctccctagc cgggtcagca
       61 atcggagcgg gaaggccagg acaggaagct gggcacctcg cgggcagccc cgaaaccacc
      121 cactggcagt agttgagaga gcggctctgc agtccgacca tagctgacaa tttactggtt
      181 catcagtgaa acaatattac attatgaaga tgtaaggaaa aaatcctacg ctaacgttgt
      241 tgcagtttga aaggcttctc tgcagaatgt caaacaaaga tcgacacatt gattccagct
      301 gttcgtcctt catcaagacg gaaccctcca gcccggcctc cctgacggac agcgtcaacc
      361 accacagccc aggtggctct tcagacgcca gcgggagcta cagttcaacc atgaatggcc
      421 atcagaacgg acttgactcg ccacctctct acccttctgc tcctatccta ggaggtagtg
      481 ggcctgtccg gaaactgtac gatgactgct ccagcaccat tgttgaagac ccccagacca
      541 agtgcgaata catgctcaac tcgatgccca agagactgtg tttagtgtgc ggtgacatcg
      601 cgtctgggta ccactatggg gtagcatcct gtgaagcctg caaggcattc ttcaagagga
      661 caattcaagg taatatagaa tatagctgcc ctgccacgaa tgaatgtgaa atcacaaagc
      721 gcagacgtaa atcctgccag gcttgccgct tcatgaagtg tttaaaagtg ggcatgctca
      781 aagaaggagt gcgtcttgac agagtacgtg gaggtcggca gaagtacaag cgcagaatag
      841 atgcggagaa cagcccgtac ctgaaccctc agttggttca gccagccaaa aagccatata
      901 acaagattgt ctcacattta ttggtggctg aaccggagaa gatctatgcc atgcccgacc
      961 ctactgttcc cgacagtgac atcaaagccc tcactacact gtgcgacttg gccgatcgag
     1021 aattggtggt tatcattgga tgggcgaagc atattccagg cttctccacg ctgtccctgg
     1081 cggaccagat gagccttctg cagagtgctt ggatggaaat tttgatcctt ggtgtcgtgt
     1141 accgatctct ttcctttgag gatgaacttg tctatgcaga cgattatata atggatgaag
     1201 accagtctaa attagcaggc cttcttgacc taaataatgc tatcctgcag ctggtaaaga
     1261 aatacaagag catgaagctg gagaaagaag aatttgtcac cctcaaagca atcgctcttg
     1321 ctaattcaga ctccatgcac atagaagacg tcgaagccgt tcagaagctt caggatgtct
     1381 tacatgaggc cttgcaggat tatgaggccg gccagcacat ggaagaccct cgcagggccg
     1441 gtaagatgct gatgacgctg ccgctcctga ggcagacctc taccaaggcc gtgcagcatt
     1501 tctacaacat caaactggaa ggcaaagtcc ccatgcacaa actttttttg gaaatgctgg
     1561 aggccaaggt ctgactaaaa gcttccccgg gcatcctatc ctgcacgccg aaaaagggaa
     1621 aaataaaccc aagagtgatg tcaaaaaaac ttagagttta gttaacaaca tcaaaaatca
     1681 agtaagactg cactgataat ttagcagcaa gactatgaag cagctttcag attcctctgt
     1741 atcctgatga gtttttttct accttaatct catcttttct ccgtttcttt tgctctttat
     1801 ttttttttct cccgccctat tctctttctc cttcgtttct tgcttccttc attgctggtt
     1861 ccccactctc tcctttcctt ccttccttcc ttccctccca ccctccttcc tttcttctac
     1921 tttcctccct cttttctcat tcttcccctt tcttttaagt tttaatagct ctggttataa
     1981 gaaaatgttg cggcctttcc tttcttttcc tttccgtccc tccctccctt ccttcttcct
     2041 tcctccttcc tccttccttc cttctttcct tccttccgtc tttccttctg ctgctgaact
     2101 tttaaaagaa gtctctaatt ggagagtgat ggaagccagc cctgccaaag gatggagatc
     2161 cataatatgg ataccagtga acttcttgtg aaccataaca tccccaatga ctaaggaatc
     2221 aaagagagag aaccatggta cctacaacat acatacacaa attgcaacat acacaaactg
     2281 actgagtgca gtattagatt ccactggagc agcctctaat tagacgacgt acgcaacgtc
     2341 gcatcagctg cctcttatca ttgcttttcc atctagatca gttacagcca tttgattcct
     2401 taattgtttt ttcaagtctt ccaggtattt gttagtttag cgactatgta actttttcag
     2461 ggaatagttt aagctttatt cattcatgca atactaaaga gaaataagaa tactgcaatt
     2521 ctgtgctggc tttgaacaat tatgaacaat aatgaaggac aaatgaatcc tgaaggaaga
     2581 ttttttaaaa atgtttcatt tcttcttaca aatggagatt tttttgtacc agctttacca
     2641 cttttcagcc atttattaat atgggaattt aacttactca agcaatagtt gaagggaagg
     2701 tgcatattat cacggatgca atttatgttg tgtgccagtc tggtcccaaa catcaatttc
     2761 ttaacatgaa ctccagttta cctaaatgtt cactgacaca aaggattaga ttacacctgc
     2821 agtggctccg agtggtcacg tatataagca ccacacatgg aatacagatc cgtagaatga
     2881 tcaggagcgc ccctctctac ctgggaggtc cagttgccgt aggatttcta gctgccacgg
     2941 tgggttagga atgagatact gcctgttgca aagttacaga ccttttctca gaaggagctg
     3001 tgagccagta ttcacccaag aggcaataag gcaaatgcca gaatttgaaa acaaaaaaac
     3061 aaaaacatca aagacagcag acgcctgacc aaatgctaaa acctaatctc tatgggttga
     3121 ttcatttagg aatgtttgtt taaattaatc tgcagttttt aaccaagagc taagccaatc
     3181 tatgtgcttt tcaaccagta tcgtcacagc aagaaagtca gtcaggtccc agactgttaa
     3241 gaggtgtaat ctaatgaaga aatcaattag acacccccaa aatctacaat cgcttgaata
     3301 accgataaac agtaacctcc atcaaatgct ataccaatgg accagtgtta gtagctgctc
     3361 cctgtattat gtgaacagtc tgattctatg tacacagatg taattaaaat tgtaatccta
     3421 acaaacaaaa gaaatgtagt tcagcttttc aatgtttcat gtttgctgtg ctttcctgaa
     3481 ttttatgttg cattcaaaga ctgttgtctt gttgttcgtg tggtgtttgg attcttgtgg
     3541 tgtgtgcttt tagacacagg gtagaattag agacaatatt ggatgtacaa ttcctcagga
     3601 gactacagta gtatattcta ttccttacca ttaataaggt tcttcctaat aagaattaag
     3661 agattgaaac tccaaacaag tattcattat gaacagatac acatcaaaat cataatgata
     3721 ttttcaaaac aaggaataat ttctctaatg gtttattata gaataccaat gtatagctta
     3781 gaaataaaac tttgaatatt tcaagaatat agataagtct aatttttaaa tgctgtatat
     3841 atggctttca ctcagtcatc tctcagatgt tgttataaac tcgctctgtg ttgttgcgaa
     3901 acattttggt gcggacacgt ttccaaaact attgctactt tgtgtgcttt aaacaaaata
     3961 ccttgggttg atgtttcatc agcctagtgc taggaatact gtgtatctat cattagctat
     4021 atgggactat aattgtagat tgtggtttct cagtagagaa gtgactgtag tgtgattcta
     4081 gataaatcat cattagcaat tcattcagat ggtcaataac ttgaaattta tagctgtgat
     4141 aggagttcag aaattggcac atcccttgaa aaataacaac agaaaataca actcctggga
     4201 aaaaaaaaaa aaggtgctga ttctctaaga ttatttatat atgtaagtgt ttaaaaaaga
     4261 ttattttcca gacagtttgt gcagggttta agttactact attcaaccac actatatata
     4321 taaataaaat atatacaata tatacattgt tttcactgta tcacattaaa gtacttgggc
     4381 ttaaggagta aaagccaacc aactgaaaac gcaagatgga gagatgtaaa aagaacgaag
     4441 aacaattttt agttttcagt ttaattgact ctcagcattg caagagaaca agtatctcac
     4501 aaataggaaa cacaactaaa atttagatct aaaagaactg cacgggcttt agggtaaatg
     4561 cttcatctta aacctcgctt gaggtaagtt tttctcaagt ttcaagcaag accatttact
     4621 taatgtgaag tattggaaag ttatcaaggt gtatgtttag ccgtatgatt tttaatgtta
     4681 ttttgcttct tttaggtttg ttcttatttt aaaggcaata tgattgtgtg actacctgta
     4741 gtttacactt gtgtttcaat cagatcagat tgttgtattt attccactat tttgcattta
     4801 aatgataaca taaaagatat aaaaaattta aaactgctat ttttcttata gaagagaaaa
     4861 tgagtgttgg tgattgtatt ttaattattt aagcgtctct gtttacctgc ctaggaaaca
     4921 tttttatggc agtcttatgt gcacaagatc gttaaaagga caaaataaat tttacactgc
     4981 ttataataat ccaggagttg cattatagac agtagtaaaa agaataataa taataaaacc
     5041 ttgtctatag ctgtagatgg gcttcacatc tgtaaagcaa tcaattgtat atttttgtga
     5101 tgtgtaccat actgtgtgct ccagcaaatg tccatttgtg taaatgtatt tattttatat
     5161 tgtatatatt gttaaatgca aaagggagat atgattctgt aactccaatc agttcagatg
     5221 tgtaactcaa attattatgc ctttcaggat gacggtagag caatattaaa catgcttcca
     5281 cttttgattg
//
LOCUS       XM_032604491            5252 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus estrogen related receptor gamma (ESRRG),
            transcript variant X4, mRNA.
ACCESSION   XM_032604491
VERSION     XM_032604491.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5252
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5252
                     /gene="ESRRG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 42 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739767"
     CDS             229..1536
                     /gene="ESRRG"
                     /codon_start=1
                     /product="estrogen-related receptor gamma isoform X3"
                     /protein_id="XP_032460382.1"
                     /db_xref="GeneID:116739767"
                     /translation="MSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGS
                     YSSTMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPK
                     RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC
                     RFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL
                     LVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMS
                     LLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYK
                     SMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG
                     KMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV"
     misc_feature    523..813
                     /gene="ESRRG"
                     /note="DNA-binding domain of estrogen related receptors
                     (ERR) is composed of two C4-type zinc fingers; Region:
                     NR_DBD_ERR; cd07170"
                     /db_xref="CDD:143544"
     misc_feature    order(535..537,571..582,595..600,604..612,616..621,
                     628..630,688..693,700..702,709..711,751..756,763..786)
                     /gene="ESRRG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143544"
     misc_feature    order(541..543,550..552,592..594,601..603,649..651,
                     667..669,697..699,706..708)
                     /gene="ESRRG"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143544"
     misc_feature    868..1527
                     /gene="ESRRG"
                     /note="The ligand binding domain of estrogen
                     receptor-related nuclear receptors; Region: NR_LBD_ERR;
                     cd06946"
                     /db_xref="CDD:132744"
     misc_feature    order(952..954,961..963,973..975,982..984,1096..1098,
                     1135..1137,1147..1149,1177..1185,1462..1464,1471..1473,
                     1477..1479)
                     /gene="ESRRG"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132744"
     misc_feature    order(997..999,1039..1041,1048..1053,1060..1065,
                     1501..1506,1513..1518)
                     /gene="ESRRG"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132744"
     misc_feature    1285..1287
                     /gene="ESRRG"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132744"
ORIGIN      
        1 ataaaaccac agctctgcag aaactgcctt tgtcaccctt catttgcatc cctgcccatg
       61 agtacagcat cgggatgagc cgacactctc tgtatggccg gagtggggaa ggatacactc
      121 cagagctgac aatttactgg ttcatcagtg aaacaatatt acattatgaa gatgtaagga
      181 aaaaatccta cgctaacgtt gttgcagttt gaaaggcttc tctgcagaat gtcaaacaaa
      241 gatcgacaca ttgattccag ctgttcgtcc ttcatcaaga cggaaccctc cagcccggcc
      301 tccctgacgg acagcgtcaa ccaccacagc ccaggtggct cttcagacgc cagcgggagc
      361 tacagttcaa ccatgaatgg ccatcagaac ggacttgact cgccacctct ctacccttct
      421 gctcctatcc taggaggtag tgggcctgtc cggaaactgt acgatgactg ctccagcacc
      481 attgttgaag acccccagac caagtgcgaa tacatgctca actcgatgcc caagagactg
      541 tgtttagtgt gcggtgacat cgcgtctggg taccactatg gggtagcatc ctgtgaagcc
      601 tgcaaggcat tcttcaagag gacaattcaa ggtaatatag aatatagctg ccctgccacg
      661 aatgaatgtg aaatcacaaa gcgcagacgt aaatcctgcc aggcttgccg cttcatgaag
      721 tgtttaaaag tgggcatgct caaagaagga gtgcgtcttg acagagtacg tggaggtcgg
      781 cagaagtaca agcgcagaat agatgcggag aacagcccgt acctgaaccc tcagttggtt
      841 cagccagcca aaaagccata taacaagatt gtctcacatt tattggtggc tgaaccggag
      901 aagatctatg ccatgcccga ccctactgtt cccgacagtg acatcaaagc cctcactaca
      961 ctgtgcgact tggccgatcg agaattggtg gttatcattg gatgggcgaa gcatattcca
     1021 ggcttctcca cgctgtccct ggcggaccag atgagccttc tgcagagtgc ttggatggaa
     1081 attttgatcc ttggtgtcgt gtaccgatct ctttcctttg aggatgaact tgtctatgca
     1141 gacgattata taatggatga agaccagtct aaattagcag gccttcttga cctaaataat
     1201 gctatcctgc agctggtaaa gaaatacaag agcatgaagc tggagaaaga agaatttgtc
     1261 accctcaaag caatcgctct tgctaattca gactccatgc acatagaaga cgtcgaagcc
     1321 gttcagaagc ttcaggatgt cttacatgag gccttgcagg attatgaggc cggccagcac
     1381 atggaagacc ctcgcagggc cggtaagatg ctgatgacgc tgccgctcct gaggcagacc
     1441 tctaccaagg ccgtgcagca tttctacaac atcaaactgg aaggcaaagt ccccatgcac
     1501 aaactttttt tggaaatgct ggaggccaag gtctgactaa aagcttcccc gggcatccta
     1561 tcctgcacgc cgaaaaaggg aaaaataaac ccaagagtga tgtcaaaaaa acttagagtt
     1621 tagttaacaa catcaaaaat caagtaagac tgcactgata atttagcagc aagactatga
     1681 agcagctttc agattcctct gtatcctgat gagttttttt ctaccttaat ctcatctttt
     1741 ctccgtttct tttgctcttt attttttttt ctcccgccct attctctttc tccttcgttt
     1801 cttgcttcct tcattgctgg ttccccactc tctcctttcc ttccttcctt ccttccctcc
     1861 caccctcctt cctttcttct actttcctcc ctcttttctc attcttcccc tttcttttaa
     1921 gttttaatag ctctggttat aagaaaatgt tgcggccttt cctttctttt cctttccgtc
     1981 cctccctccc ttccttcttc cttcctcctt cctccttcct tccttctttc cttccttccg
     2041 tctttccttc tgctgctgaa cttttaaaag aagtctctaa ttggagagtg atggaagcca
     2101 gccctgccaa aggatggaga tccataatat ggataccagt gaacttcttg tgaaccataa
     2161 catccccaat gactaaggaa tcaaagagag agaaccatgg tacctacaac atacatacac
     2221 aaattgcaac atacacaaac tgactgagtg cagtattaga ttccactgga gcagcctcta
     2281 attagacgac gtacgcaacg tcgcatcagc tgcctcttat cattgctttt ccatctagat
     2341 cagttacagc catttgattc cttaattgtt ttttcaagtc ttccaggtat ttgttagttt
     2401 agcgactatg taactttttc agggaatagt ttaagcttta ttcattcatg caatactaaa
     2461 gagaaataag aatactgcaa ttctgtgctg gctttgaaca attatgaaca ataatgaagg
     2521 acaaatgaat cctgaaggaa gattttttaa aaatgtttca tttcttctta caaatggaga
     2581 tttttttgta ccagctttac cacttttcag ccatttatta atatgggaat ttaacttact
     2641 caagcaatag ttgaagggaa ggtgcatatt atcacggatg caatttatgt tgtgtgccag
     2701 tctggtccca aacatcaatt tcttaacatg aactccagtt tacctaaatg ttcactgaca
     2761 caaaggatta gattacacct gcagtggctc cgagtggtca cgtatataag caccacacat
     2821 ggaatacaga tccgtagaat gatcaggagc gcccctctct acctgggagg tccagttgcc
     2881 gtaggatttc tagctgccac ggtgggttag gaatgagata ctgcctgttg caaagttaca
     2941 gaccttttct cagaaggagc tgtgagccag tattcaccca agaggcaata aggcaaatgc
     3001 cagaatttga aaacaaaaaa acaaaaacat caaagacagc agacgcctga ccaaatgcta
     3061 aaacctaatc tctatgggtt gattcattta ggaatgtttg tttaaattaa tctgcagttt
     3121 ttaaccaaga gctaagccaa tctatgtgct tttcaaccag tatcgtcaca gcaagaaagt
     3181 cagtcaggtc ccagactgtt aagaggtgta atctaatgaa gaaatcaatt agacaccccc
     3241 aaaatctaca atcgcttgaa taaccgataa acagtaacct ccatcaaatg ctataccaat
     3301 ggaccagtgt tagtagctgc tccctgtatt atgtgaacag tctgattcta tgtacacaga
     3361 tgtaattaaa attgtaatcc taacaaacaa aagaaatgta gttcagcttt tcaatgtttc
     3421 atgtttgctg tgctttcctg aattttatgt tgcattcaaa gactgttgtc ttgttgttcg
     3481 tgtggtgttt ggattcttgt ggtgtgtgct tttagacaca gggtagaatt agagacaata
     3541 ttggatgtac aattcctcag gagactacag tagtatattc tattccttac cattaataag
     3601 gttcttccta ataagaatta agagattgaa actccaaaca agtattcatt atgaacagat
     3661 acacatcaaa atcataatga tattttcaaa acaaggaata atttctctaa tggtttatta
     3721 tagaatacca atgtatagct tagaaataaa actttgaata tttcaagaat atagataagt
     3781 ctaattttta aatgctgtat atatggcttt cactcagtca tctctcagat gttgttataa
     3841 actcgctctg tgttgttgcg aaacattttg gtgcggacac gtttccaaaa ctattgctac
     3901 tttgtgtgct ttaaacaaaa taccttgggt tgatgtttca tcagcctagt gctaggaata
     3961 ctgtgtatct atcattagct atatgggact ataattgtag attgtggttt ctcagtagag
     4021 aagtgactgt agtgtgattc tagataaatc atcattagca attcattcag atggtcaata
     4081 acttgaaatt tatagctgtg ataggagttc agaaattggc acatcccttg aaaaataaca
     4141 acagaaaata caactcctgg gaaaaaaaaa aaaaggtgct gattctctaa gattatttat
     4201 atatgtaagt gtttaaaaaa gattattttc cagacagttt gtgcagggtt taagttacta
     4261 ctattcaacc acactatata tataaataaa atatatacaa tatatacatt gttttcactg
     4321 tatcacatta aagtacttgg gcttaaggag taaaagccaa ccaactgaaa acgcaagatg
     4381 gagagatgta aaaagaacga agaacaattt ttagttttca gtttaattga ctctcagcat
     4441 tgcaagagaa caagtatctc acaaatagga aacacaacta aaatttagat ctaaaagaac
     4501 tgcacgggct ttagggtaaa tgcttcatct taaacctcgc ttgaggtaag tttttctcaa
     4561 gtttcaagca agaccattta cttaatgtga agtattggaa agttatcaag gtgtatgttt
     4621 agccgtatga tttttaatgt tattttgctt cttttaggtt tgttcttatt ttaaaggcaa
     4681 tatgattgtg tgactacctg tagtttacac ttgtgtttca atcagatcag attgttgtat
     4741 ttattccact attttgcatt taaatgataa cataaaagat ataaaaaatt taaaactgct
     4801 atttttctta tagaagagaa aatgagtgtt ggtgattgta ttttaattat ttaagcgtct
     4861 ctgtttacct gcctaggaaa catttttatg gcagtcttat gtgcacaaga tcgttaaaag
     4921 gacaaaataa attttacact gcttataata atccaggagt tgcattatag acagtagtaa
     4981 aaagaataat aataataaaa ccttgtctat agctgtagat gggcttcaca tctgtaaagc
     5041 aatcaattgt atatttttgt gatgtgtacc atactgtgtg ctccagcaaa tgtccatttg
     5101 tgtaaatgta tttattttat attgtatata ttgttaaatg caaaagggag atatgattct
     5161 gtaactccaa tcagttcaga tgtgtaactc aaattattat gcctttcagg atgacggtag
     5221 agcaatatta aacatgcttc cacttttgat tg
//
LOCUS       XM_032604495            5182 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus estrogen related receptor gamma (ESRRG),
            transcript variant X5, mRNA.
ACCESSION   XM_032604495
VERSION     XM_032604495.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5182
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5182
                     /gene="ESRRG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 42 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739767"
     CDS             159..1466
                     /gene="ESRRG"
                     /codon_start=1
                     /product="estrogen-related receptor gamma isoform X3"
                     /protein_id="XP_032460386.1"
                     /db_xref="GeneID:116739767"
                     /translation="MSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGS
                     YSSTMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPK
                     RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC
                     RFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL
                     LVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMS
                     LLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYK
                     SMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG
                     KMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV"
     misc_feature    453..743
                     /gene="ESRRG"
                     /note="DNA-binding domain of estrogen related receptors
                     (ERR) is composed of two C4-type zinc fingers; Region:
                     NR_DBD_ERR; cd07170"
                     /db_xref="CDD:143544"
     misc_feature    order(465..467,501..512,525..530,534..542,546..551,
                     558..560,618..623,630..632,639..641,681..686,693..716)
                     /gene="ESRRG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143544"
     misc_feature    order(471..473,480..482,522..524,531..533,579..581,
                     597..599,627..629,636..638)
                     /gene="ESRRG"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143544"
     misc_feature    798..1457
                     /gene="ESRRG"
                     /note="The ligand binding domain of estrogen
                     receptor-related nuclear receptors; Region: NR_LBD_ERR;
                     cd06946"
                     /db_xref="CDD:132744"
     misc_feature    order(882..884,891..893,903..905,912..914,1026..1028,
                     1065..1067,1077..1079,1107..1115,1392..1394,1401..1403,
                     1407..1409)
                     /gene="ESRRG"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132744"
     misc_feature    order(927..929,969..971,978..983,990..995,1431..1436,
                     1443..1448)
                     /gene="ESRRG"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132744"
     misc_feature    1215..1217
                     /gene="ESRRG"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132744"
ORIGIN      
        1 ctcgccttct tcagaatcat ctttgaccct gataacccct gagcgccaga cagagctgac
       61 aatttactgg ttcatcagtg aaacaatatt acattatgaa gatgtaagga aaaaatccta
      121 cgctaacgtt gttgcagttt gaaaggcttc tctgcagaat gtcaaacaaa gatcgacaca
      181 ttgattccag ctgttcgtcc ttcatcaaga cggaaccctc cagcccggcc tccctgacgg
      241 acagcgtcaa ccaccacagc ccaggtggct cttcagacgc cagcgggagc tacagttcaa
      301 ccatgaatgg ccatcagaac ggacttgact cgccacctct ctacccttct gctcctatcc
      361 taggaggtag tgggcctgtc cggaaactgt acgatgactg ctccagcacc attgttgaag
      421 acccccagac caagtgcgaa tacatgctca actcgatgcc caagagactg tgtttagtgt
      481 gcggtgacat cgcgtctggg taccactatg gggtagcatc ctgtgaagcc tgcaaggcat
      541 tcttcaagag gacaattcaa ggtaatatag aatatagctg ccctgccacg aatgaatgtg
      601 aaatcacaaa gcgcagacgt aaatcctgcc aggcttgccg cttcatgaag tgtttaaaag
      661 tgggcatgct caaagaagga gtgcgtcttg acagagtacg tggaggtcgg cagaagtaca
      721 agcgcagaat agatgcggag aacagcccgt acctgaaccc tcagttggtt cagccagcca
      781 aaaagccata taacaagatt gtctcacatt tattggtggc tgaaccggag aagatctatg
      841 ccatgcccga ccctactgtt cccgacagtg acatcaaagc cctcactaca ctgtgcgact
      901 tggccgatcg agaattggtg gttatcattg gatgggcgaa gcatattcca ggcttctcca
      961 cgctgtccct ggcggaccag atgagccttc tgcagagtgc ttggatggaa attttgatcc
     1021 ttggtgtcgt gtaccgatct ctttcctttg aggatgaact tgtctatgca gacgattata
     1081 taatggatga agaccagtct aaattagcag gccttcttga cctaaataat gctatcctgc
     1141 agctggtaaa gaaatacaag agcatgaagc tggagaaaga agaatttgtc accctcaaag
     1201 caatcgctct tgctaattca gactccatgc acatagaaga cgtcgaagcc gttcagaagc
     1261 ttcaggatgt cttacatgag gccttgcagg attatgaggc cggccagcac atggaagacc
     1321 ctcgcagggc cggtaagatg ctgatgacgc tgccgctcct gaggcagacc tctaccaagg
     1381 ccgtgcagca tttctacaac atcaaactgg aaggcaaagt ccccatgcac aaactttttt
     1441 tggaaatgct ggaggccaag gtctgactaa aagcttcccc gggcatccta tcctgcacgc
     1501 cgaaaaaggg aaaaataaac ccaagagtga tgtcaaaaaa acttagagtt tagttaacaa
     1561 catcaaaaat caagtaagac tgcactgata atttagcagc aagactatga agcagctttc
     1621 agattcctct gtatcctgat gagttttttt ctaccttaat ctcatctttt ctccgtttct
     1681 tttgctcttt attttttttt ctcccgccct attctctttc tccttcgttt cttgcttcct
     1741 tcattgctgg ttccccactc tctcctttcc ttccttcctt ccttccctcc caccctcctt
     1801 cctttcttct actttcctcc ctcttttctc attcttcccc tttcttttaa gttttaatag
     1861 ctctggttat aagaaaatgt tgcggccttt cctttctttt cctttccgtc cctccctccc
     1921 ttccttcttc cttcctcctt cctccttcct tccttctttc cttccttccg tctttccttc
     1981 tgctgctgaa cttttaaaag aagtctctaa ttggagagtg atggaagcca gccctgccaa
     2041 aggatggaga tccataatat ggataccagt gaacttcttg tgaaccataa catccccaat
     2101 gactaaggaa tcaaagagag agaaccatgg tacctacaac atacatacac aaattgcaac
     2161 atacacaaac tgactgagtg cagtattaga ttccactgga gcagcctcta attagacgac
     2221 gtacgcaacg tcgcatcagc tgcctcttat cattgctttt ccatctagat cagttacagc
     2281 catttgattc cttaattgtt ttttcaagtc ttccaggtat ttgttagttt agcgactatg
     2341 taactttttc agggaatagt ttaagcttta ttcattcatg caatactaaa gagaaataag
     2401 aatactgcaa ttctgtgctg gctttgaaca attatgaaca ataatgaagg acaaatgaat
     2461 cctgaaggaa gattttttaa aaatgtttca tttcttctta caaatggaga tttttttgta
     2521 ccagctttac cacttttcag ccatttatta atatgggaat ttaacttact caagcaatag
     2581 ttgaagggaa ggtgcatatt atcacggatg caatttatgt tgtgtgccag tctggtccca
     2641 aacatcaatt tcttaacatg aactccagtt tacctaaatg ttcactgaca caaaggatta
     2701 gattacacct gcagtggctc cgagtggtca cgtatataag caccacacat ggaatacaga
     2761 tccgtagaat gatcaggagc gcccctctct acctgggagg tccagttgcc gtaggatttc
     2821 tagctgccac ggtgggttag gaatgagata ctgcctgttg caaagttaca gaccttttct
     2881 cagaaggagc tgtgagccag tattcaccca agaggcaata aggcaaatgc cagaatttga
     2941 aaacaaaaaa acaaaaacat caaagacagc agacgcctga ccaaatgcta aaacctaatc
     3001 tctatgggtt gattcattta ggaatgtttg tttaaattaa tctgcagttt ttaaccaaga
     3061 gctaagccaa tctatgtgct tttcaaccag tatcgtcaca gcaagaaagt cagtcaggtc
     3121 ccagactgtt aagaggtgta atctaatgaa gaaatcaatt agacaccccc aaaatctaca
     3181 atcgcttgaa taaccgataa acagtaacct ccatcaaatg ctataccaat ggaccagtgt
     3241 tagtagctgc tccctgtatt atgtgaacag tctgattcta tgtacacaga tgtaattaaa
     3301 attgtaatcc taacaaacaa aagaaatgta gttcagcttt tcaatgtttc atgtttgctg
     3361 tgctttcctg aattttatgt tgcattcaaa gactgttgtc ttgttgttcg tgtggtgttt
     3421 ggattcttgt ggtgtgtgct tttagacaca gggtagaatt agagacaata ttggatgtac
     3481 aattcctcag gagactacag tagtatattc tattccttac cattaataag gttcttccta
     3541 ataagaatta agagattgaa actccaaaca agtattcatt atgaacagat acacatcaaa
     3601 atcataatga tattttcaaa acaaggaata atttctctaa tggtttatta tagaatacca
     3661 atgtatagct tagaaataaa actttgaata tttcaagaat atagataagt ctaattttta
     3721 aatgctgtat atatggcttt cactcagtca tctctcagat gttgttataa actcgctctg
     3781 tgttgttgcg aaacattttg gtgcggacac gtttccaaaa ctattgctac tttgtgtgct
     3841 ttaaacaaaa taccttgggt tgatgtttca tcagcctagt gctaggaata ctgtgtatct
     3901 atcattagct atatgggact ataattgtag attgtggttt ctcagtagag aagtgactgt
     3961 agtgtgattc tagataaatc atcattagca attcattcag atggtcaata acttgaaatt
     4021 tatagctgtg ataggagttc agaaattggc acatcccttg aaaaataaca acagaaaata
     4081 caactcctgg gaaaaaaaaa aaaaggtgct gattctctaa gattatttat atatgtaagt
     4141 gtttaaaaaa gattattttc cagacagttt gtgcagggtt taagttacta ctattcaacc
     4201 acactatata tataaataaa atatatacaa tatatacatt gttttcactg tatcacatta
     4261 aagtacttgg gcttaaggag taaaagccaa ccaactgaaa acgcaagatg gagagatgta
     4321 aaaagaacga agaacaattt ttagttttca gtttaattga ctctcagcat tgcaagagaa
     4381 caagtatctc acaaatagga aacacaacta aaatttagat ctaaaagaac tgcacgggct
     4441 ttagggtaaa tgcttcatct taaacctcgc ttgaggtaag tttttctcaa gtttcaagca
     4501 agaccattta cttaatgtga agtattggaa agttatcaag gtgtatgttt agccgtatga
     4561 tttttaatgt tattttgctt cttttaggtt tgttcttatt ttaaaggcaa tatgattgtg
     4621 tgactacctg tagtttacac ttgtgtttca atcagatcag attgttgtat ttattccact
     4681 attttgcatt taaatgataa cataaaagat ataaaaaatt taaaactgct atttttctta
     4741 tagaagagaa aatgagtgtt ggtgattgta ttttaattat ttaagcgtct ctgtttacct
     4801 gcctaggaaa catttttatg gcagtcttat gtgcacaaga tcgttaaaag gacaaaataa
     4861 attttacact gcttataata atccaggagt tgcattatag acagtagtaa aaagaataat
     4921 aataataaaa ccttgtctat agctgtagat gggcttcaca tctgtaaagc aatcaattgt
     4981 atatttttgt gatgtgtacc atactgtgtg ctccagcaaa tgtccatttg tgtaaatgta
     5041 tttattttat attgtatata ttgttaaatg caaaagggag atatgattct gtaactccaa
     5101 tcagttcaga tgtgtaactc aaattattat gcctttcagg atgacggtag agcaatatta
     5161 aacatgcttc cacttttgat tg
//
LOCUS       XM_032604500            5107 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus estrogen related receptor gamma (ESRRG),
            transcript variant X6, mRNA.
ACCESSION   XM_032604500
VERSION     XM_032604500.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5107
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5107
                     /gene="ESRRG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 42 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739767"
     CDS             84..1391
                     /gene="ESRRG"
                     /codon_start=1
                     /product="estrogen-related receptor gamma isoform X3"
                     /protein_id="XP_032460391.1"
                     /db_xref="GeneID:116739767"
                     /translation="MSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGS
                     YSSTMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPK
                     RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC
                     RFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL
                     LVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMS
                     LLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYK
                     SMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG
                     KMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV"
     misc_feature    378..668
                     /gene="ESRRG"
                     /note="DNA-binding domain of estrogen related receptors
                     (ERR) is composed of two C4-type zinc fingers; Region:
                     NR_DBD_ERR; cd07170"
                     /db_xref="CDD:143544"
     misc_feature    order(390..392,426..437,450..455,459..467,471..476,
                     483..485,543..548,555..557,564..566,606..611,618..641)
                     /gene="ESRRG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143544"
     misc_feature    order(396..398,405..407,447..449,456..458,504..506,
                     522..524,552..554,561..563)
                     /gene="ESRRG"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143544"
     misc_feature    723..1382
                     /gene="ESRRG"
                     /note="The ligand binding domain of estrogen
                     receptor-related nuclear receptors; Region: NR_LBD_ERR;
                     cd06946"
                     /db_xref="CDD:132744"
     misc_feature    order(807..809,816..818,828..830,837..839,951..953,
                     990..992,1002..1004,1032..1040,1317..1319,1326..1328,
                     1332..1334)
                     /gene="ESRRG"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132744"
     misc_feature    order(852..854,894..896,903..908,915..920,1356..1361,
                     1368..1373)
                     /gene="ESRRG"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132744"
     misc_feature    1140..1142
                     /gene="ESRRG"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132744"
ORIGIN      
        1 cgggcggcaa cgccctgccc ccaactgcgt ggaggaccct cttcgatttt cttccggggt
       61 aggggtagag gcttctctgc agaatgtcaa acaaagatcg acacattgat tccagctgtt
      121 cgtccttcat caagacggaa ccctccagcc cggcctccct gacggacagc gtcaaccacc
      181 acagcccagg tggctcttca gacgccagcg ggagctacag ttcaaccatg aatggccatc
      241 agaacggact tgactcgcca cctctctacc cttctgctcc tatcctagga ggtagtgggc
      301 ctgtccggaa actgtacgat gactgctcca gcaccattgt tgaagacccc cagaccaagt
      361 gcgaatacat gctcaactcg atgcccaaga gactgtgttt agtgtgcggt gacatcgcgt
      421 ctgggtacca ctatggggta gcatcctgtg aagcctgcaa ggcattcttc aagaggacaa
      481 ttcaaggtaa tatagaatat agctgccctg ccacgaatga atgtgaaatc acaaagcgca
      541 gacgtaaatc ctgccaggct tgccgcttca tgaagtgttt aaaagtgggc atgctcaaag
      601 aaggagtgcg tcttgacaga gtacgtggag gtcggcagaa gtacaagcgc agaatagatg
      661 cggagaacag cccgtacctg aaccctcagt tggttcagcc agccaaaaag ccatataaca
      721 agattgtctc acatttattg gtggctgaac cggagaagat ctatgccatg cccgacccta
      781 ctgttcccga cagtgacatc aaagccctca ctacactgtg cgacttggcc gatcgagaat
      841 tggtggttat cattggatgg gcgaagcata ttccaggctt ctccacgctg tccctggcgg
      901 accagatgag ccttctgcag agtgcttgga tggaaatttt gatccttggt gtcgtgtacc
      961 gatctctttc ctttgaggat gaacttgtct atgcagacga ttatataatg gatgaagacc
     1021 agtctaaatt agcaggcctt cttgacctaa ataatgctat cctgcagctg gtaaagaaat
     1081 acaagagcat gaagctggag aaagaagaat ttgtcaccct caaagcaatc gctcttgcta
     1141 attcagactc catgcacata gaagacgtcg aagccgttca gaagcttcag gatgtcttac
     1201 atgaggcctt gcaggattat gaggccggcc agcacatgga agaccctcgc agggccggta
     1261 agatgctgat gacgctgccg ctcctgaggc agacctctac caaggccgtg cagcatttct
     1321 acaacatcaa actggaaggc aaagtcccca tgcacaaact ttttttggaa atgctggagg
     1381 ccaaggtctg actaaaagct tccccgggca tcctatcctg cacgccgaaa aagggaaaaa
     1441 taaacccaag agtgatgtca aaaaaactta gagtttagtt aacaacatca aaaatcaagt
     1501 aagactgcac tgataattta gcagcaagac tatgaagcag ctttcagatt cctctgtatc
     1561 ctgatgagtt tttttctacc ttaatctcat cttttctccg tttcttttgc tctttatttt
     1621 tttttctccc gccctattct ctttctcctt cgtttcttgc ttccttcatt gctggttccc
     1681 cactctctcc tttccttcct tccttccttc cctcccaccc tccttccttt cttctacttt
     1741 cctccctctt ttctcattct tcccctttct tttaagtttt aatagctctg gttataagaa
     1801 aatgttgcgg cctttccttt cttttccttt ccgtccctcc ctcccttcct tcttccttcc
     1861 tccttcctcc ttccttcctt ctttccttcc ttccgtcttt ccttctgctg ctgaactttt
     1921 aaaagaagtc tctaattgga gagtgatgga agccagccct gccaaaggat ggagatccat
     1981 aatatggata ccagtgaact tcttgtgaac cataacatcc ccaatgacta aggaatcaaa
     2041 gagagagaac catggtacct acaacataca tacacaaatt gcaacataca caaactgact
     2101 gagtgcagta ttagattcca ctggagcagc ctctaattag acgacgtacg caacgtcgca
     2161 tcagctgcct cttatcattg cttttccatc tagatcagtt acagccattt gattccttaa
     2221 ttgttttttc aagtcttcca ggtatttgtt agtttagcga ctatgtaact ttttcaggga
     2281 atagtttaag ctttattcat tcatgcaata ctaaagagaa ataagaatac tgcaattctg
     2341 tgctggcttt gaacaattat gaacaataat gaaggacaaa tgaatcctga aggaagattt
     2401 tttaaaaatg tttcatttct tcttacaaat ggagattttt ttgtaccagc tttaccactt
     2461 ttcagccatt tattaatatg ggaatttaac ttactcaagc aatagttgaa gggaaggtgc
     2521 atattatcac ggatgcaatt tatgttgtgt gccagtctgg tcccaaacat caatttctta
     2581 acatgaactc cagtttacct aaatgttcac tgacacaaag gattagatta cacctgcagt
     2641 ggctccgagt ggtcacgtat ataagcacca cacatggaat acagatccgt agaatgatca
     2701 ggagcgcccc tctctacctg ggaggtccag ttgccgtagg atttctagct gccacggtgg
     2761 gttaggaatg agatactgcc tgttgcaaag ttacagacct tttctcagaa ggagctgtga
     2821 gccagtattc acccaagagg caataaggca aatgccagaa tttgaaaaca aaaaaacaaa
     2881 aacatcaaag acagcagacg cctgaccaaa tgctaaaacc taatctctat gggttgattc
     2941 atttaggaat gtttgtttaa attaatctgc agtttttaac caagagctaa gccaatctat
     3001 gtgcttttca accagtatcg tcacagcaag aaagtcagtc aggtcccaga ctgttaagag
     3061 gtgtaatcta atgaagaaat caattagaca cccccaaaat ctacaatcgc ttgaataacc
     3121 gataaacagt aacctccatc aaatgctata ccaatggacc agtgttagta gctgctccct
     3181 gtattatgtg aacagtctga ttctatgtac acagatgtaa ttaaaattgt aatcctaaca
     3241 aacaaaagaa atgtagttca gcttttcaat gtttcatgtt tgctgtgctt tcctgaattt
     3301 tatgttgcat tcaaagactg ttgtcttgtt gttcgtgtgg tgtttggatt cttgtggtgt
     3361 gtgcttttag acacagggta gaattagaga caatattgga tgtacaattc ctcaggagac
     3421 tacagtagta tattctattc cttaccatta ataaggttct tcctaataag aattaagaga
     3481 ttgaaactcc aaacaagtat tcattatgaa cagatacaca tcaaaatcat aatgatattt
     3541 tcaaaacaag gaataatttc tctaatggtt tattatagaa taccaatgta tagcttagaa
     3601 ataaaacttt gaatatttca agaatataga taagtctaat ttttaaatgc tgtatatatg
     3661 gctttcactc agtcatctct cagatgttgt tataaactcg ctctgtgttg ttgcgaaaca
     3721 ttttggtgcg gacacgtttc caaaactatt gctactttgt gtgctttaaa caaaatacct
     3781 tgggttgatg tttcatcagc ctagtgctag gaatactgtg tatctatcat tagctatatg
     3841 ggactataat tgtagattgt ggtttctcag tagagaagtg actgtagtgt gattctagat
     3901 aaatcatcat tagcaattca ttcagatggt caataacttg aaatttatag ctgtgatagg
     3961 agttcagaaa ttggcacatc ccttgaaaaa taacaacaga aaatacaact cctgggaaaa
     4021 aaaaaaaaag gtgctgattc tctaagatta tttatatatg taagtgttta aaaaagatta
     4081 ttttccagac agtttgtgca gggtttaagt tactactatt caaccacact atatatataa
     4141 ataaaatata tacaatatat acattgtttt cactgtatca cattaaagta cttgggctta
     4201 aggagtaaaa gccaaccaac tgaaaacgca agatggagag atgtaaaaag aacgaagaac
     4261 aatttttagt tttcagttta attgactctc agcattgcaa gagaacaagt atctcacaaa
     4321 taggaaacac aactaaaatt tagatctaaa agaactgcac gggctttagg gtaaatgctt
     4381 catcttaaac ctcgcttgag gtaagttttt ctcaagtttc aagcaagacc atttacttaa
     4441 tgtgaagtat tggaaagtta tcaaggtgta tgtttagccg tatgattttt aatgttattt
     4501 tgcttctttt aggtttgttc ttattttaaa ggcaatatga ttgtgtgact acctgtagtt
     4561 tacacttgtg tttcaatcag atcagattgt tgtatttatt ccactatttt gcatttaaat
     4621 gataacataa aagatataaa aaatttaaaa ctgctatttt tcttatagaa gagaaaatga
     4681 gtgttggtga ttgtatttta attatttaag cgtctctgtt tacctgccta ggaaacattt
     4741 ttatggcagt cttatgtgca caagatcgtt aaaaggacaa aataaatttt acactgctta
     4801 taataatcca ggagttgcat tatagacagt agtaaaaaga ataataataa taaaaccttg
     4861 tctatagctg tagatgggct tcacatctgt aaagcaatca attgtatatt tttgtgatgt
     4921 gtaccatact gtgtgctcca gcaaatgtcc atttgtgtaa atgtatttat tttatattgt
     4981 atatattgtt aaatgcaaaa gggagatatg attctgtaac tccaatcagt tcagatgtgt
     5041 aactcaaatt attatgcctt tcaggatgac ggtagagcaa tattaaacat gcttccactt
     5101 ttgattg
//
LOCUS       XM_032604509            1488 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus estrogen related receptor gamma (ESRRG),
            transcript variant X7, mRNA.
ACCESSION   XM_032604509
VERSION     XM_032604509.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1488
                     /gene="ESRRG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 77%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739767"
     CDS             209..1336
                     /gene="ESRRG"
                     /codon_start=1
                     /product="estrogen-related receptor gamma isoform X4"
                     /protein_id="XP_032460400.1"
                     /db_xref="GeneID:116739767"
                     /translation="MSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGS
                     YSSTMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPK
                     RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC
                     RFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL
                     LVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMS
                     LLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYK
                     SMKLEKEEFVTLKAIALANSGWHIDNGPLLHFLICRFYPFP"
     misc_feature    503..793
                     /gene="ESRRG"
                     /note="DNA-binding domain of estrogen related receptors
                     (ERR) is composed of two C4-type zinc fingers; Region:
                     NR_DBD_ERR; cd07170"
                     /db_xref="CDD:143544"
     misc_feature    order(515..517,551..562,575..580,584..592,596..601,
                     608..610,668..673,680..682,689..691,731..736,743..766)
                     /gene="ESRRG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143544"
     misc_feature    order(521..523,530..532,572..574,581..583,629..631,
                     647..649,677..679,686..688)
                     /gene="ESRRG"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143544"
     misc_feature    848..>1300
                     /gene="ESRRG"
                     /note="The ligand binding domain of nuclear receptors, a
                     family of ligand-activated transcription regulators;
                     Region: NR_LBD; cl11397"
                     /db_xref="CDD:472173"
     misc_feature    order(941..946,953..955,962..967,1052..1057,1064..1069,
                     1076..1078,1085..1087,1184..1186)
                     /gene="ESRRG"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132726"
     misc_feature    order(968..970,977..979,989..991,1004..1006,1019..1024,
                     1028..1033,1040..1045)
                     /gene="ESRRG"
                     /note="coregulator recognition site [active]"
                     /db_xref="CDD:132726"
ORIGIN      
        1 tttaaagcag cctttttaac cccgagactt tccaagacct cctctccacg caggaacttt
       61 ccttctctgt tgtcagattg agcaccgtgc tcttgtcatc agatccgagc taggctccct
      121 gctgcacagt agagaggctt ccttaagaca tttgtccttg aaactgcacc aaactcttgg
      181 aagaacccag aacgtgcttc tctgcagaat gtcaaacaaa gatcgacaca ttgattccag
      241 ctgttcgtcc ttcatcaaga cggaaccctc cagcccggcc tccctgacgg acagcgtcaa
      301 ccaccacagc ccaggtggct cttcagacgc cagcgggagc tacagttcaa ccatgaatgg
      361 ccatcagaac ggacttgact cgccacctct ctacccttct gctcctatcc taggaggtag
      421 tgggcctgtc cggaaactgt acgatgactg ctccagcacc attgttgaag acccccagac
      481 caagtgcgaa tacatgctca actcgatgcc caagagactg tgtttagtgt gcggtgacat
      541 cgcgtctggg taccactatg gggtagcatc ctgtgaagcc tgcaaggcat tcttcaagag
      601 gacaattcaa ggtaatatag aatatagctg ccctgccacg aatgaatgtg aaatcacaaa
      661 gcgcagacgt aaatcctgcc aggcttgccg cttcatgaag tgtttaaaag tgggcatgct
      721 caaagaagga gtgcgtcttg acagagtacg tggaggtcgg cagaagtaca agcgcagaat
      781 agatgcggag aacagcccgt acctgaaccc tcagttggtt cagccagcca aaaagccata
      841 taacaagatt gtctcacatt tattggtggc tgaaccggag aagatctatg ccatgcccga
      901 ccctactgtt cccgacagtg acatcaaagc cctcactaca ctgtgcgact tggccgatcg
      961 agaattggtg gttatcattg gatgggcgaa gcatattcca ggcttctcca cgctgtccct
     1021 ggcggaccag atgagccttc tgcagagtgc ttggatggaa attttgatcc ttggtgtcgt
     1081 gtaccgatct ctttcctttg aggatgaact tgtctatgca gacgattata taatggatga
     1141 agaccagtct aaattagcag gccttcttga cctaaataat gctatcctgc agctggtaaa
     1201 gaaatacaag agcatgaagc tggagaaaga agaatttgtc accctcaaag caatcgctct
     1261 tgctaattca ggttggcata ttgacaatgg cccgttgtta cattttctaa tatgtcggtt
     1321 ttaccccttc ccttaacttc tttcttcttc agggatttgc tagacccagt tgtaaattct
     1381 gaggcagcaa aattatagtc attgtagctt tctagtgaaa agttagaaga aaaggaatat
     1441 caacttaaag ggaattattt ttattttgtt tgtttattaa aagctgtg
//
LOCUS       XR_004345707             809 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739806
            (LOC116739806), ncRNA.
ACCESSION   XR_004345707
VERSION     XR_004345707.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..809
                     /gene="LOC116739806"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116739806"
     ncRNA           1..809
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739806"
                     /product="uncharacterized LOC116739806"
                     /db_xref="GeneID:116739806"
ORIGIN      
        1 ccccagatgc aaatgtctgt ctccagatgt tgatgataag gatttggacc agttaccttg
       61 gcagggtcag aactgcagca ggttaagcag cgtcggtccg cactccctgt gacccaggac
      121 gtcatgatgc ctgtctgttt tctcaatgat aacttggcag aagaagagag aggctgccag
      181 gttctcctcg ggtggttacg tggttcagaa gggagaaaat tttccttggc aaccaggtcc
      241 aactggaaaa aataatcaag atgtcacctg atgctacaag tcaccagcta tgttctcagc
      301 tctgcggtcc tgccagaagc tgaaccagca gaggaaactc ggcgtcatgg aaagaacact
      361 aaacttggag tcagaacacg gagtgggagt ctaatttcta cctccgatgg cttttgcgac
      421 tctggacaag tcattcaact tcttacaacc tggatttcct ctttaatagc tttcctacca
      481 tcctcaggga aggatctttc aagcattggt ggttaggtaa tcaccaaagg ggtgcatgac
      541 tggacccaac cacacgcttc aaaagtcacc ttgatgccaa gatgccagcc ccctcccctc
      601 cctgcaagag cccagcgtgg cccatcaggc cttcctcttt actccatcaa tgtgcttcca
      661 cgactatact taccatattt taattatggt tactacatct gtctttgctg ctgagctgta
      721 actgccttta gtgtcacaca tgttttactt ctcttttaat tcttagtgcc tagcacacag
      781 taggtgctcc gtaaatgttc agtgaataa
//
LOCUS       XM_032604531            3277 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acidic nuclear phosphoprotein 32 family
            member E (ANP32E), transcript variant X1, mRNA.
ACCESSION   XM_032604531
VERSION     XM_032604531.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3277
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3277
                     /gene="ANP32E"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 26 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739809"
     CDS             319..1119
                     /gene="ANP32E"
                     /codon_start=1
                     /product="acidic leucine-rich nuclear phosphoprotein 32
                     family member E isoform X1"
                     /protein_id="XP_032460422.1"
                     /db_xref="GeneID:116739809"
                     /translation="MEMKKRINLELRDRAPEEVTELVLDNCLCVNGEIEGLNDTFKKL
                     EFLSMANVELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSGNKIKD
                     LSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEE
                     EDDEDGDEDDEEEEEDEAGPPEGYEEEEEEEEDEDEDEDEDEAGSELGEGEEEVGLSY
                     LMKEEIQDEEDDDDYVEEGEEEEEEEEEGLRGEKRKRDAEDDGEEEDD"
     misc_feature    418..756
                     /gene="ANP32E"
                     /note="Leucine-rich repeat; Region: LRR_9; pfam14580"
                     /db_xref="CDD:405295"
     misc_feature    448..513
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    514..585
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    586..660
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    661..741
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gtgtcatgga ggctcagtct ccgagcagcc attgaagggg aaggaactgc gggtgtgtgt
       61 atgtgtgtgc gtgtgagtgc gcgcgcgagt gtgtggacaa gaaggtgggg gcagctgagt
      121 taagagtccc aactccttgg actccatttg ctattccctt ctttctcccc cacacctatc
      181 tggtggtggt ggtgggcgtt tatatttgca tttcttttca ttcatttcca aatcttttaa
      241 aattttaggg ttgggggtag tgggaaaggg aggaaaaggt aagggaggag agtagtagca
      301 gaagagcagg aggaggacat ggagatgaag aagaggatta acctggagtt aagggacaga
      361 gccccggagg aggtgacaga gttggtcctt gataattgcc tctgtgtcaa tggggaaatt
      421 gagggcctga atgatacttt taaaaaacta gagtttctga gtatggctaa tgtggaacta
      481 agttcactgg cccggctgcc cagcttaaat aaacttcgaa agttggaact tagtgacaat
      541 ataatttcgg gaggcttgga agtcctggca gagaaatgtc caaaccttac ctacctcaat
      601 ttgagtggaa acaaaatcaa agatcttagt acagtagaag ctctgcaaaa tcttaaaaat
      661 ttgaagagtc ttgacttgtt taactgtgag atcacaaacc tggaagatta tagagaaagt
      721 atttttgaac tgctacagca aatcacgtac ttagatggat ttgaccagga ggataatgaa
      781 gcaccagact cagaagaaga ggatgatgaa gatggagatg aagatgatga agaggaagag
      841 gaagatgaag ctggtccacc tgaaggatat gaggaagagg aagaggagga ggaggacgag
      901 gatgaggatg aggatgaaga tgaagcaggc tcagaactgg gagagggaga agaggaagtg
      961 ggcctctcat acttaatgaa agaagaaatt caggatgaag aagatgatga tgactatgtt
     1021 gaagaagggg aagaagaaga agaagaggaa gaagaaggtc ttcgagggga aaagaggaaa
     1081 cgagatgctg aagatgatgg agaggaagaa gatgactaga tcattctaag accagattcc
     1141 ctaatgttcc tgggtgtgca atagagtgat cacatcttct ttgtttcttc atgtacgata
     1201 gctatcccta cagaagataa tgtgtaactt tttataggaa aagtgtggtt ttactatttt
     1261 tgccttacca ttccaaataa gattaactag tctgttaatg atcatattgt atgtagagac
     1321 aaattttcat tgaccccatt gtgaaattcc ctagcaattt atttagaatc ttaatttttc
     1381 taattaaagt tcactgtatt agtcattttt agtataatta aaacatgatt gcttttacac
     1441 aggcataata tggtgcattt cattcatagg attttaaagt tatttataaa ttaactgaaa
     1501 tcacagttgg ctggaatctg gaatgaaaat agtctcttga attataagtt ggttattttt
     1561 ttagaggcaa cccagagatc tttagtttga aggcagtgac tttttttttt ttggttgagg
     1621 gtatttgggt gcttttttgt cacatgagta gcttggaaag taggagcaga atagtaaagg
     1681 ttctattcaa caatatagtt catggctttt gtgaaggctt ctaaaacctt ttaagccagg
     1741 tgactaagaa gattttagtt tccaaggaaa aattgcttat actgatttca gagacatgta
     1801 ggagagccct ttcttcaagt cgaagatcat gacctgccaa cggttgttat ttggttttaa
     1861 gtgtgcattc tttgttttcc tctcagtgat tcttttatga tcaccttcct ttcttgtttc
     1921 actcccctct tctcaaaaaa gagttgggaa acttatggat acccaagatg actttgtctt
     1981 atacctcaac caccttttca gacctgtctt agctttaaac aagctaagtg aaagaaattg
     2041 agtattttct gaaataggaa tattattatc aatacagttt tatgcaacag actctgctta
     2101 ctgtaaatct ctttcttgac aagatgtaca gactgtatta ggaggatgaa gaaagaaaag
     2161 aagcagagga ggctcttgga agcagcatgt gtgttcctaa aagtcagaac aattgcctgt
     2221 tgatgattaa tgagacattc aaatcagatt agcttcccaa gcgatttaga taccactctg
     2281 caaagtattt ctaattttcc tgagtagaaa ctttaattat tctttctata gttttaaagc
     2341 attaccagac atagcattta attgaaatat actggacagt tggaaaaata tttgaaacta
     2401 aatcaatatt aaaattaaga tttggtttca ggtggatgtc ctttaaaaat agaaaaatat
     2461 ttgggataac tgtgagtgtg tgtttcctta tacagctact aaatataata ttatgagtag
     2521 gcaagtacat ctcctttttt ttgttgtgga ggctccatgt tcaaggcaat tgctgtctta
     2581 atcttggcta tctaaaaatt ttttcccctt tgttttgaat atttgtaagt ttttaaaaag
     2641 ttactagcag caaattaatt gaagttacac tttcgtactg ggacacattt aaattaccga
     2701 atatagtatt gcttcttttt tggtttaaaa tgtatgactt ggggatttaa agtaaaaaat
     2761 gatgaagtta tttgtggata aactaaaaaa tttgcataac tgactgaaat aaaactgttg
     2821 ggataagttt agtgggggga ttggaatctc caaaaggcta acattttact cctttttaac
     2881 aattataatg tcctgtttta gtccgttaag ggttctcatt gcatagtatg ccagattata
     2941 aaatacttac tttaaaagtt aaatctatat attgactttc ttatcaatca tcttattgtg
     3001 caatcaacat gagagttctt tggtttgaaa acaacactta gagcctccaa aaaacttttt
     3061 aagacttact tagctttgtg ggtggtattt tcatgcaaat aagtaagggt gggttttata
     3121 ttttgtagaa gtttttggtc ctattttaat gctctttgta tggcagtatg tatatagtgt
     3181 gttgaattcc tcaaaaccct ccttaaaaac tttgaagtta atacttttgt gcaactgtgt
     3241 tttgaataaa gccatgacag tgttaaaaac aaaaaaa
//
LOCUS       XM_032604539            3120 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acidic nuclear phosphoprotein 32 family
            member E (ANP32E), transcript variant X2, mRNA.
ACCESSION   XM_032604539
VERSION     XM_032604539.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3120
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3120
                     /gene="ANP32E"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739809"
     CDS             312..962
                     /gene="ANP32E"
                     /codon_start=1
                     /product="acidic leucine-rich nuclear phosphoprotein 32
                     family member E isoform X2"
                     /protein_id="XP_032460430.1"
                     /db_xref="GeneID:116739809"
                     /translation="MEMKKRINLELRDRAPEELELSDNIISGGLEVLAEKCPNLTYLN
                     LSGNKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQED
                     NEAPDSEEEDDEDGDEDDEEEEEDEAGPPEGYEEEEEEEEDEDEDEDEDEAGSELGEG
                     EEEVGLSYLMKEEIQDEEDDDDYVEEGEEEEEEEEEGLRGEKRKRDAEDDGEEEDD"
     misc_feature    360..428
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <366..599
                     /gene="ANP32E"
                     /note="Leucine-rich repeat; Region: LRR_9; pfam14580"
                     /db_xref="CDD:405295"
     misc_feature    429..503
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    504..584
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 ggaggctcag tctccgagca gccattgaag gggaaggaac tgcgggtgtg tgtatgtgtg
       61 tgcgtgtgag tgcgcgcgcg agtgtgtgga caagaaggtg ggggcagctg agttaagagt
      121 cccaactcct tggactccat ttgctattcc cttctttctc ccccacacct atctggtggt
      181 ggtggtgggc gtttatattt gcatttcttt tcattcattt ccaaatcttt taaaatttta
      241 gggttggggg tagtgggaaa gggaggaaaa ggtaagggag gagagtagta gcagaagagc
      301 aggaggagga catggagatg aagaagagga ttaacctgga gttaagggac agagccccgg
      361 aggagttgga acttagtgac aatataattt cgggaggctt ggaagtcctg gcagagaaat
      421 gtccaaacct tacctacctc aatttgagtg gaaacaaaat caaagatctt agtacagtag
      481 aagctctgca aaatcttaaa aatttgaaga gtcttgactt gtttaactgt gagatcacaa
      541 acctggaaga ttatagagaa agtatttttg aactgctaca gcaaatcacg tacttagatg
      601 gatttgacca ggaggataat gaagcaccag actcagaaga agaggatgat gaagatggag
      661 atgaagatga tgaagaggaa gaggaagatg aagctggtcc acctgaagga tatgaggaag
      721 aggaagagga ggaggaggac gaggatgagg atgaggatga agatgaagca ggctcagaac
      781 tgggagaggg agaagaggaa gtgggcctct catacttaat gaaagaagaa attcaggatg
      841 aagaagatga tgatgactat gttgaagaag gggaagaaga agaagaagag gaagaagaag
      901 gtcttcgagg ggaaaagagg aaacgagatg ctgaagatga tggagaggaa gaagatgact
      961 agatcattct aagaccagat tccctaatgt tcctgggtgt gcaatagagt gatcacatct
     1021 tctttgtttc ttcatgtacg atagctatcc ctacagaaga taatgtgtaa ctttttatag
     1081 gaaaagtgtg gttttactat ttttgcctta ccattccaaa taagattaac tagtctgtta
     1141 atgatcatat tgtatgtaga gacaaatttt cattgacccc attgtgaaat tccctagcaa
     1201 tttatttaga atcttaattt ttctaattaa agttcactgt attagtcatt tttagtataa
     1261 ttaaaacatg attgctttta cacaggcata atatggtgca tttcattcat aggattttaa
     1321 agttatttat aaattaactg aaatcacagt tggctggaat ctggaatgaa aatagtctct
     1381 tgaattataa gttggttatt tttttagagg caacccagag atctttagtt tgaaggcagt
     1441 gacttttttt tttttggttg agggtatttg ggtgcttttt tgtcacatga gtagcttgga
     1501 aagtaggagc agaatagtaa aggttctatt caacaatata gttcatggct tttgtgaagg
     1561 cttctaaaac cttttaagcc aggtgactaa gaagatttta gtttccaagg aaaaattgct
     1621 tatactgatt tcagagacat gtaggagagc cctttcttca agtcgaagat catgacctgc
     1681 caacggttgt tatttggttt taagtgtgca ttctttgttt tcctctcagt gattctttta
     1741 tgatcacctt cctttcttgt ttcactcccc tcttctcaaa aaagagttgg gaaacttatg
     1801 gatacccaag atgactttgt cttatacctc aaccaccttt tcagacctgt cttagcttta
     1861 aacaagctaa gtgaaagaaa ttgagtattt tctgaaatag gaatattatt atcaatacag
     1921 ttttatgcaa cagactctgc ttactgtaaa tctctttctt gacaagatgt acagactgta
     1981 ttaggaggat gaagaaagaa aagaagcaga ggaggctctt ggaagcagca tgtgtgttcc
     2041 taaaagtcag aacaattgcc tgttgatgat taatgagaca ttcaaatcag attagcttcc
     2101 caagcgattt agataccact ctgcaaagta tttctaattt tcctgagtag aaactttaat
     2161 tattctttct atagttttaa agcattacca gacatagcat ttaattgaaa tatactggac
     2221 agttggaaaa atatttgaaa ctaaatcaat attaaaatta agatttggtt tcaggtggat
     2281 gtcctttaaa aatagaaaaa tatttgggat aactgtgagt gtgtgtttcc ttatacagct
     2341 actaaatata atattatgag taggcaagta catctccttt tttttgttgt ggaggctcca
     2401 tgttcaaggc aattgctgtc ttaatcttgg ctatctaaaa attttttccc ctttgttttg
     2461 aatatttgta agtttttaaa aagttactag cagcaaatta attgaagtta cactttcgta
     2521 ctgggacaca tttaaattac cgaatatagt attgcttctt ttttggttta aaatgtatga
     2581 cttggggatt taaagtaaaa aatgatgaag ttatttgtgg ataaactaaa aaatttgcat
     2641 aactgactga aataaaactg ttgggataag tttagtgggg ggattggaat ctccaaaagg
     2701 ctaacatttt actccttttt aacaattata atgtcctgtt ttagtccgtt aagggttctc
     2761 attgcatagt atgccagatt ataaaatact tactttaaaa gttaaatcta tatattgact
     2821 ttcttatcaa tcatcttatt gtgcaatcaa catgagagtt ctttggtttg aaaacaacac
     2881 ttagagcctc caaaaaactt tttaagactt acttagcttt gtgggtggta ttttcatgca
     2941 aataagtaag ggtgggtttt atattttgta gaagtttttg gtcctatttt aatgctcttt
     3001 gtatggcagt atgtatatag tgtgttgaat tcctcaaaac cctccttaaa aactttgaag
     3061 ttaatacttt tgtgcaactg tgttttgaat aaagccatga cagtgttaaa aacaaaaaaa
//
LOCUS       XM_032604549             805 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acidic nuclear phosphoprotein 32 family
            member E (ANP32E), transcript variant X3, mRNA.
ACCESSION   XM_032604549
VERSION     XM_032604549.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..805
                     /gene="ANP32E"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 95% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739809"
     CDS             314..805
                     /gene="ANP32E"
                     /codon_start=1
                     /product="acidic leucine-rich nuclear phosphoprotein 32
                     family member E isoform X3"
                     /protein_id="XP_032460440.1"
                     /db_xref="GeneID:116739809"
                     /translation="MEMKKRINLELRDRAPEEVTELVLDNCLCVNGEIEGLNDTFKKL
                     EFLSMANVELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSGNKIKD
                     LSTVEALMEMKMMKRKRKMKLVHLKDMRKRKRRRRTRMRMRMKMKQAQNWEREKRKWA
                     SHT"
     misc_feature    <434..>625
                     /gene="ANP32E"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    443..508
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    509..580
                     /gene="ANP32E"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 atggaggctc agtctccgag cagccattga aggggaagga actgcgggtg tgtgtatgtg
       61 tgtgcgtgtg agtgcgcgcg cgagtgtgtg gacaagaagg tgggggcagc tgagttaaga
      121 gtcccaactc cttggactcc atttgctatt cccttctttc tcccccacac ctatctggtg
      181 gtggtggtgg gcgtttatat ttgcatttct tttcattcat ttccaaatct tttaaaattt
      241 tagggttggg ggtagtggga aagggaggaa aaggtaaggg aggagagtag tagcagaaga
      301 gcaggaggag gacatggaga tgaagaagag gattaacctg gagttaaggg acagagcccc
      361 ggaggaggtg acagagttgg tccttgataa ttgcctctgt gtcaatgggg aaattgaggg
      421 cctgaatgat acttttaaaa aactagagtt tctgagtatg gctaatgtgg aactaagttc
      481 actggcccgg ctgcccagct taaataaact tcgaaagttg gaacttagtg acaatataat
      541 ttcgggaggc ttggaagtcc tggcagagaa atgtccaaac cttacctacc tcaatttgag
      601 tggaaacaaa atcaaagatc ttagtacagt agaagctctg atggagatga agatgatgaa
      661 gaggaagagg aagatgaagc tggtccacct gaaggatatg aggaagagga agaggaggag
      721 gaggacgagg atgaggatga ggatgaagat gaagcaggct cagaactggg agagggagaa
      781 gaggaagtgg gcctctcata cttaa
//
LOCUS       XM_032604562            2197 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein kinase AMP-activated catalytic
            subunit alpha 2 (PRKAA2), transcript variant X1, mRNA.
ACCESSION   XM_032604562
VERSION     XM_032604562.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2197
                     /gene="PRKAA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 34 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739822"
     CDS             87..1745
                     /gene="PRKAA2"
                     /codon_start=1
                     /product="5'-AMP-activated protein kinase catalytic
                     subunit alpha-2 isoform X1"
                     /protein_id="XP_032460453.1"
                     /db_xref="GeneID:116739822"
                     /translation="MAEKQKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAV
                     KILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELF
                     DYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGL
                     SNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH
                     VPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYL
                     FPEDPSYDANVIDDEAVKEVCEKFECTESEVMNSLYSGDPQDQLAVAYHLIIDNRRIM
                     NQASEFYLASSPPTGSFMDDSAMHIPPGLKPHPERMPPLVADSPKARCPLDALNTTKP
                     KSLAVKKAKWHLGIRSQSKPYDIMAEVYRAMKQLDFEWKVVNAYHLRVRRRNPVTGNY
                     VKMSLQLYLVDNRSYLLDFKSIDDEVVEQRSGSSTPQRSCSAAGLHRPRSSLDSVTAE
                     SHLLSGSLTGSLIGSTSSSVPPRLGSHTMDFFEMCASLITTLAR"
     misc_feature    123..890
                     /gene="PRKAA2"
                     /note="Catalytic domain of the Alpha subunit of the
                     Serine/Threonine Kinase, AMP-activated protein kinase;
                     Region: STKc_AMPK_alpha; cd14079"
                     /db_xref="CDD:270981"
     misc_feature    order(150..164,174..176,213..215,219..221,315..317,
                     363..374,384..386,390..395,399..401,498..503,507..509,
                     513..518,522..524,552..557,564..566,606..620,624..626,
                     714..725)
                     /gene="PRKAA2"
                     /note="active site"
                     /db_xref="CDD:270981"
     misc_feature    order(150..161,174..176,213..215,219..221,315..317,
                     363..374,384..386,513..518,522..524,552..557)
                     /gene="PRKAA2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270981"
     misc_feature    order(384..386,390..395,399..401,501..503,507..509,
                     513..515,564..566,606..620,624..626,714..725)
                     /gene="PRKAA2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270981"
     misc_feature    552..620
                     /gene="PRKAA2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270981"
     misc_feature    order(576..593,648..653,657..659,666..668,846..848)
                     /gene="PRKAA2"
                     /note="heterotrimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:270981"
     misc_feature    939..1133
                     /gene="PRKAA2"
                     /note="UBA-like autoinhibitory domain (AID) found in
                     vertebrate 5'-AMP-activated protein kinase catalytic
                     subunit alpha-2 (AMPKalpha-2); Region: UBA_AID_AAPK2;
                     cd14404"
                     /db_xref="CDD:270587"
     misc_feature    1269..1736
                     /gene="PRKAA2"
                     /note="C-terminal regulatory domain of 5'-AMP-activated
                     serine/threonine kinase, subunit alpha; Region: AMPKA2_C;
                     cd12200"
                     /db_xref="CDD:213385"
     misc_feature    order(1281..1301,1305..1307,1320..1322,1386..1394,
                     1452..1466,1479..1481,1488..1499,1503..1505,1692..1694,
                     1701..1709,1713..1718,1728..1730)
                     /gene="PRKAA2"
                     /note="beta subunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:213385"
     misc_feature    order(1281..1283,1416..1418,1422..1424,1686..1691,
                     1695..1700,1707..1709)
                     /gene="PRKAA2"
                     /note="gamma subunit interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:213385"
ORIGIN      
        1 gtaggcggcg gcggcggcag cacagaagag ctggcggcgg cggcggcggc ggcgcgggcg
       61 gcggcgcgag gctgcgcgcc ccgaacatgg ctgagaagca gaagcacgac gggcgggtga
      121 agatcggaca ctacgtgctg ggggacacgt tgggcgtcgg caccttcggc aaagtgaaga
      181 ttggagaaca tcaattaaca ggccataagg tggcagttaa aattttaaat agacagaaga
      241 ttcgcagttt agatgttgtt ggaaaaataa aacgagaaat tcaaaatcta aaactctttc
      301 gtcatcctca tattatcaaa ctataccagg tgatcagcac tccaacagat ttttttatgg
      361 taatggaata tgtgtctggt ggtgaattat ttgactacat ctgtaaacat ggacgggttg
      421 aagagatgga agccaggcgc ctctttcagc agattctgtc tgccgtggat tactgtcaca
      481 ggcatatggt cgttcatcga gacctgaaac cagagaacgt gctattggat gcacacatga
      541 atgccaagat agctgatttt ggattatcta atatgatgtc agatggtgaa tttctgcgaa
      601 ctagttgtgg ctccccaaat tatgcagcac ctgaagtcat ctcaggcaga ttgtatgcag
      661 gtcctgaagt tgatatctgg agctgcggtg ttatcttgta cgctcttctc tgtggcaccc
      721 tcccctttga tgatgagcat gtacctacgt tgtttaagaa gatccgaggg ggtgtttttt
      781 atatcccaga atatctcaat cgttctgttg ccactctcct gatgcatatg ctacaggttg
      841 accccctgaa acgagcaact atcaaagaca taagagagca tgaatggttt aaacaagatt
      901 tgcccagtta cttatttcct gaagacccct cctatgatgc taacgtcatt gatgatgagg
      961 ctgtgaaaga agtgtgtgaa aaatttgagt gtacagaatc agaagtaatg aacagtttat
     1021 atagtggtga ccctcaagac cagcttgcag tggcttatca tcttatcatt gacaatcgga
     1081 gaataatgaa ccaagccagt gagttctacc tcgcctctag tcccccaact ggttctttta
     1141 tggatgatag tgccatgcat attcccccag gcctgaaacc tcatccagaa aggatgccac
     1201 ctcttgtagc agacagccct aaagcaagat gtccgttgga tgcactgaat acaactaagc
     1261 ccaaatcttt agctgtgaaa aaagccaagt ggcatcttgg aatccgaagt caaagcaaac
     1321 catatgacat tatggctgaa gtttaccgag ctatgaagca gctggatttt gaatggaagg
     1381 tagtgaatgc ataccatcta cgtgtaagaa gaagaaatcc agtgactggc aattatgtga
     1441 aaatgagctt acagctgtac ctagttgaca atagaagcta tcttttggac tttaaaagca
     1501 ttgatgatga ggtggtggag cagaggtctg gctcctcaac gccccagcgg tcctgctctg
     1561 ctgctggctt acacagaccg cgatccagtt tggattctgt aactgcggag agccatttgc
     1621 tctctggttc cctcactggc tccctgatcg gaagcacatc gtcttcagtt ccacctcgcc
     1681 tgggcagtca caccatggat ttttttgaaa tgtgtgccag tctgatcact actttagccc
     1741 gttgatgatc tttcctgagt ttctatcatc tttctgtttt tgcactgtga aaatcagata
     1801 tattctttaa attattgttt tacttatgga tatcacatac tctgcagtac tggttgagag
     1861 ctgtgactat ctccagggga cgctcaacac cactgaaatg actgaaagcg taaaagtctg
     1921 acatttcatt tactgtagat atctgtaatt ctgttttgcc tctgataaat ttacataggt
     1981 agtatcttta atacgtgaac atcgatgaag gttattgtta atctaaaatt gtggattcac
     2041 tacagatgat taatacccct ttactgggaa accatctcag tcaaagggtg gttgggcaac
     2101 atcttcttgc tttactgttt agtgtaggta aatccagttt gcttcctaaa tttcagcagg
     2161 ctttaagctg tgtttatgca caagaagatt aaaaaaa
//
LOCUS       XM_032604571            1626 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein kinase AMP-activated catalytic
            subunit alpha 2 (PRKAA2), transcript variant X2, mRNA.
ACCESSION   XM_032604571
VERSION     XM_032604571.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1626
                     /gene="PRKAA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739822"
     CDS             55..1626
                     /gene="PRKAA2"
                     /codon_start=1
                     /product="5'-AMP-activated protein kinase catalytic
                     subunit alpha-2 isoform X2"
                     /protein_id="XP_032460462.1"
                     /db_xref="GeneID:116739822"
                     /translation="MIFGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRH
                     PHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCH
                     RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRL
                     YAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMH
                     MLQVDPLKRATIKDIREHEWFKQDLPSYLFPEDPSYDANVIDDEAVKEVCEKFECTES
                     EVMNSLYSGDPQDQLAVAYHLIIDNRRIMNQASEFYLASSPPTGSFMDDSAMHIPPGL
                     KPHPERMPPLVADSPKARCPLDALNTTKPKSLAVKKAKWHLGIRSQSKPYDIMAEVYR
                     AMKQLDFEWKVVNAYHLRVRRRNPVTGNYVKMSLQLYLVDNRSYLLDFKSIDDEVVEQ
                     RSGSSTPQRSCSAAGLHRPRSSLDSVTAESHLLSGSLTGSLIGSTSSSVPPRLGSHTM
                     DFFEMCASLITTLAR"
     misc_feature    64..771
                     /gene="PRKAA2"
                     /note="Catalytic domain of the Alpha subunit of the
                     Serine/Threonine Kinase, AMP-activated protein kinase;
                     Region: STKc_AMPK_alpha; cd14079"
                     /db_xref="CDD:270981"
     misc_feature    order(94..96,100..102,196..198,244..255,265..267,271..276,
                     280..282,379..384,388..390,394..399,403..405,433..438,
                     445..447,487..501,505..507,595..606)
                     /gene="PRKAA2"
                     /note="active site"
                     /db_xref="CDD:270981"
     misc_feature    order(265..267,271..276,280..282,382..384,388..390,
                     394..396,445..447,487..501,505..507,595..606)
                     /gene="PRKAA2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270981"
     misc_feature    433..501
                     /gene="PRKAA2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270981"
     misc_feature    order(457..474,529..534,538..540,547..549,727..729)
                     /gene="PRKAA2"
                     /note="heterotrimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:270981"
     misc_feature    820..1014
                     /gene="PRKAA2"
                     /note="UBA-like autoinhibitory domain (AID) found in
                     vertebrate 5'-AMP-activated protein kinase catalytic
                     subunit alpha-2 (AMPKalpha-2); Region: UBA_AID_AAPK2;
                     cd14404"
                     /db_xref="CDD:270587"
     misc_feature    1150..1617
                     /gene="PRKAA2"
                     /note="C-terminal regulatory domain of 5'-AMP-activated
                     serine/threonine kinase, subunit alpha; Region: AMPKA2_C;
                     cd12200"
                     /db_xref="CDD:213385"
     misc_feature    order(1162..1182,1186..1188,1201..1203,1267..1275,
                     1333..1347,1360..1362,1369..1380,1384..1386,1573..1575,
                     1582..1590,1594..1599,1609..1611)
                     /gene="PRKAA2"
                     /note="beta subunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:213385"
     misc_feature    order(1162..1164,1297..1299,1303..1305,1567..1572,
                     1576..1581,1588..1590)
                     /gene="PRKAA2"
                     /note="gamma subunit interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:213385"
ORIGIN      
        1 aatgaatgtt caggccaaca gggagtaaaa acaactaaga gaagaaggtc ttcaatgata
       61 tttggagaac atcaattaac aggccataag gtggcagtta aaattttaaa tagacagaag
      121 attcgcagtt tagatgttgt tggaaaaata aaacgagaaa ttcaaaatct aaaactcttt
      181 cgtcatcctc atattatcaa actataccag gtgatcagca ctccaacaga tttttttatg
      241 gtaatggaat atgtgtctgg tggtgaatta tttgactaca tctgtaaaca tggacgggtt
      301 gaagagatgg aagccaggcg cctctttcag cagattctgt ctgccgtgga ttactgtcac
      361 aggcatatgg tcgttcatcg agacctgaaa ccagagaacg tgctattgga tgcacacatg
      421 aatgccaaga tagctgattt tggattatct aatatgatgt cagatggtga atttctgcga
      481 actagttgtg gctccccaaa ttatgcagca cctgaagtca tctcaggcag attgtatgca
      541 ggtcctgaag ttgatatctg gagctgcggt gttatcttgt acgctcttct ctgtggcacc
      601 ctcccctttg atgatgagca tgtacctacg ttgtttaaga agatccgagg gggtgttttt
      661 tatatcccag aatatctcaa tcgttctgtt gccactctcc tgatgcatat gctacaggtt
      721 gaccccctga aacgagcaac tatcaaagac ataagagagc atgaatggtt taaacaagat
      781 ttgcccagtt acttatttcc tgaagacccc tcctatgatg ctaacgtcat tgatgatgag
      841 gctgtgaaag aagtgtgtga aaaatttgag tgtacagaat cagaagtaat gaacagttta
      901 tatagtggtg accctcaaga ccagcttgca gtggcttatc atcttatcat tgacaatcgg
      961 agaataatga accaagccag tgagttctac ctcgcctcta gtcccccaac tggttctttt
     1021 atggatgata gtgccatgca tattccccca ggcctgaaac ctcatccaga aaggatgcca
     1081 cctcttgtag cagacagccc taaagcaaga tgtccgttgg atgcactgaa tacaactaag
     1141 cccaaatctt tagctgtgaa aaaagccaag tggcatcttg gaatccgaag tcaaagcaaa
     1201 ccatatgaca ttatggctga agtttaccga gctatgaagc agctggattt tgaatggaag
     1261 gtagtgaatg cataccatct acgtgtaaga agaagaaatc cagtgactgg caattatgtg
     1321 aaaatgagct tacagctgta cctagttgac aatagaagct atcttttgga ctttaaaagc
     1381 attgatgatg aggtggtgga gcagaggtct ggctcctcaa cgccccagcg gtcctgctct
     1441 gctgctggct tacacagacc gcgatccagt ttggattctg taactgcgga gagccatttg
     1501 ctctctggtt ccctcactgg ctccctgatc ggaagcacat cgtcttcagt tccacctcgc
     1561 ctgggcagtc acaccatgga tttttttgaa atgtgtgcca gtctgatcac tactttagcc
     1621 cgttga
//
LOCUS       XM_032604581            9242 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein kinase AMP-activated catalytic
            subunit alpha 2 (PRKAA2), transcript variant X3, mRNA.
ACCESSION   XM_032604581
VERSION     XM_032604581.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9242
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9242
                     /gene="PRKAA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739822"
     CDS             213..1601
                     /gene="PRKAA2"
                     /codon_start=1
                     /product="5'-AMP-activated protein kinase catalytic
                     subunit alpha-2 isoform X3"
                     /protein_id="XP_032460472.1"
                     /db_xref="GeneID:116739822"
                     /translation="MVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHM
                     VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAG
                     PEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQ
                     VDPLKRATIKDIREHEWFKQDLPSYLFPEDPSYDANVIDDEAVKEVCEKFECTESEVM
                     NSLYSGDPQDQLAVAYHLIIDNRRIMNQASEFYLASSPPTGSFMDDSAMHIPPGLKPH
                     PERMPPLVADSPKARCPLDALNTTKPKSLAVKKAKWHLGIRSQSKPYDIMAEVYRAMK
                     QLDFEWKVVNAYHLRVRRRNPVTGNYVKMSLQLYLVDNRSYLLDFKSIDDEVVEQRSG
                     SSTPQRSCSAAGLHRPRSSLDSVTAESHLLSGSLTGSLIGSTSSSVPPRLGSHTMDFF
                     EMCASLITTLAR"
     misc_feature    <213..746
                     /gene="PRKAA2"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    795..989
                     /gene="PRKAA2"
                     /note="UBA-like autoinhibitory domain (AID) found in
                     vertebrate 5'-AMP-activated protein kinase catalytic
                     subunit alpha-2 (AMPKalpha-2); Region: UBA_AID_AAPK2;
                     cd14404"
                     /db_xref="CDD:270587"
     misc_feature    1125..1592
                     /gene="PRKAA2"
                     /note="C-terminal regulatory domain of 5'-AMP-activated
                     serine/threonine kinase, subunit alpha; Region: AMPKA2_C;
                     cd12200"
                     /db_xref="CDD:213385"
     misc_feature    order(1137..1157,1161..1163,1176..1178,1242..1250,
                     1308..1322,1335..1337,1344..1355,1359..1361,1548..1550,
                     1557..1565,1569..1574,1584..1586)
                     /gene="PRKAA2"
                     /note="beta subunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:213385"
     misc_feature    order(1137..1139,1272..1274,1278..1280,1542..1547,
                     1551..1556,1563..1565)
                     /gene="PRKAA2"
                     /note="gamma subunit interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:213385"
ORIGIN      
        1 aggcggcggc ggcggcagca cagaagagct ggcggcggcg gcggcggcgg cgcgggcggc
       61 ggcgcgaggc tgcgcgcccc gaacatggct gagaagcaga agcacgacgg gcgggtgaag
      121 atcggacact acgtgctggg ggacacgttg ggcgtcggca ccttcggcaa agtgaagaat
      181 accaggtgat cagcactcca acagattttt ttatggtaat ggaatatgtg tctggtggtg
      241 aattatttga ctacatctgt aaacatggac gggttgaaga gatggaagcc aggcgcctct
      301 ttcagcagat tctgtctgcc gtggattact gtcacaggca tatggtcgtt catcgagacc
      361 tgaaaccaga gaacgtgcta ttggatgcac acatgaatgc caagatagct gattttggat
      421 tatctaatat gatgtcagat ggtgaatttc tgcgaactag ttgtggctcc ccaaattatg
      481 cagcacctga agtcatctca ggcagattgt atgcaggtcc tgaagttgat atctggagct
      541 gcggtgttat cttgtacgct cttctctgtg gcaccctccc ctttgatgat gagcatgtac
      601 ctacgttgtt taagaagatc cgagggggtg ttttttatat cccagaatat ctcaatcgtt
      661 ctgttgccac tctcctgatg catatgctac aggttgaccc cctgaaacga gcaactatca
      721 aagacataag agagcatgaa tggtttaaac aagatttgcc cagttactta tttcctgaag
      781 acccctccta tgatgctaac gtcattgatg atgaggctgt gaaagaagtg tgtgaaaaat
      841 ttgagtgtac agaatcagaa gtaatgaaca gtttatatag tggtgaccct caagaccagc
      901 ttgcagtggc ttatcatctt atcattgaca atcggagaat aatgaaccaa gccagtgagt
      961 tctacctcgc ctctagtccc ccaactggtt cttttatgga tgatagtgcc atgcatattc
     1021 ccccaggcct gaaacctcat ccagaaagga tgccacctct tgtagcagac agccctaaag
     1081 caagatgtcc gttggatgca ctgaatacaa ctaagcccaa atctttagct gtgaaaaaag
     1141 ccaagtggca tcttggaatc cgaagtcaaa gcaaaccata tgacattatg gctgaagttt
     1201 accgagctat gaagcagctg gattttgaat ggaaggtagt gaatgcatac catctacgtg
     1261 taagaagaag aaatccagtg actggcaatt atgtgaaaat gagcttacag ctgtacctag
     1321 ttgacaatag aagctatctt ttggacttta aaagcattga tgatgaggtg gtggagcaga
     1381 ggtctggctc ctcaacgccc cagcggtcct gctctgctgc tggcttacac agaccgcgat
     1441 ccagtttgga ttctgtaact gcggagagcc atttgctctc tggttccctc actggctccc
     1501 tgatcggaag cacatcgtct tcagttccac ctcgcctggg cagtcacacc atggattttt
     1561 ttgaaatgtg tgccagtctg atcactactt tagcccgttg atgatctttc ctgagtttct
     1621 atcatctttc tgtttttgca ctgtgaaaat cagatatatt ctttaaatta ttgttttact
     1681 tatggatatc acatactctg cagtactggt tgagagctgt gactatctcc aggggacgct
     1741 caacaccact gaaatgactg aaagcgtaaa agtctgacat ttcatttact gtagatatct
     1801 gtaattctgt tttgcctctg ataaatttac ataggtagta tctttaatac gtgaacatcg
     1861 atgaaggtta ttgttaatct aaaattgtgg attcactaca gatgattaat acccctttac
     1921 tgggaaacca tctcagtcaa agggtggttg ggcaacatct tcttgcttta ctgtttagtg
     1981 taggtaaatc cagtttgctt cctaaatttc agcaggcttt aagctgtgtt tatgcacaag
     2041 aagattaaaa aaatagccca gacattagta agatagtaat taaatgttga aatcctaaga
     2101 gccagccccc caaatttcag aaaccaagtt ctgctagcaa tttttgcaga tattgcccag
     2161 cgttcaacag aagggctgtg ggcctgaaac aggtaacggt catttccagg ttccttaaaa
     2221 acagctataa ccaactagag gttttatctt gagattttcc tgaataacat atttaagagc
     2281 cttcaaggtt ctactcagta ctggaacata tggaattaca tccacctttg tctttttcat
     2341 aaacttatat cattttacaa catgccttca aaatctacgt ttctcagatt ctttttcact
     2401 ctatttattt ttgtacttca ccaagcatga taaaatagac agttaaatga agcaaagcaa
     2461 aatgtcaaca gtctcttaaa gagaactctc atctttgatc tcttattgtg tgtggtggtg
     2521 tggagctgtg tgtatgtgtg tgtcctgttg catcccataa tgctaattat tcatcagaag
     2581 tttgttactg tatttacccc cctccctcac cttccctagt cacctttgtc tttgtttatt
     2641 gtttgatcct tagtggctaa ttgactcagc tttgaaatct tttctggttc tctttctttc
     2701 ttctatatct tggttgctag ccatccagtt tgaaacactg ttctggccct aagggctttt
     2761 gtgtacttcc aaagtttggt aggctctgac tttcactgtt gaacctggta gggcagggaa
     2821 gccttaaaca ttcaaaaaat tctctcttga gtaaatgtat gtgttgttta catatataca
     2881 tatatgtatt cgcaccagtg cttttaaatg aaaaaaccaa acattttttt tttttggctt
     2941 tgtgcaggtt tttttaaggc tttaaaaaaa acaaaaaacc tatatacagc agggtagata
     3001 atagcccatt gattatattt tgttttagta aaaatattta atttaaaaat tatgtataat
     3061 ttatcgaatt tgtatttatt catttgtctt gtttaatatg ttatgattaa caatctcatt
     3121 cacctgactt accctataaa agattaagct cttgaaaaca aaaagtgaca ttgccttgac
     3181 aggtttctct ttgccaaaaa taatgtgttt tctaccaaga agcaaatgag aatgttagac
     3241 cagatttctc ttgtgtttat gaaagacaag tatgtctgtc tttaaagagc tttgagtcag
     3301 gagtttgcag tgtgtcacat catactgttt tgcagaactt tttaaaaatg gtgttatata
     3361 acttttaagc ctgacttctt aatatcaaaa tatagggaat ccttattagc caatttggga
     3421 aagagggtgg ggttgcaggc agttaagatg tgttaagttt aaacctttga aagattgcca
     3481 cctagtggca tcgaaggata cttttttgtg aatattttta tagggaaaag cagtcctgct
     3541 gcatataggt atggcataat tttggcctca acaaatgtgt aaatacttct ttagggaaaa
     3601 acagggccac ctcataatac ttgcctatga acggggtgac cttcaaaata aggaattaat
     3661 ctgattcctt attcccaatg acaaaatccc taacaacttt gaagacagag aaacggtagg
     3721 aaggaatcca gtggcatttt agcttcttta gtctaatgaa tcaaatgtta gaaacttatg
     3781 tcaaaattgc tttaaatgga tgactgtcat gttttttaag agttaagaag ttatttacta
     3841 ttttctcact cttgccagta tttatgaata tctacatttt gatagccatc tgttgaattt
     3901 taggaggacc aggggtcaca gtttgggttc ttgtgtcctt aaggttttag agcacagctc
     3961 ttctgtgaat gtagatggcg tagtactttg tttgtagaga gaagattaca ggaggctcag
     4021 cccagcataa cagggctgga acattttcat aggagactct ttgttgctaa tgagcaggga
     4081 gagggaaaga aatcagttgc taaattccca catttcagtc ttgtcaactg ggtaattgtg
     4141 gatatggtat gtggtagaca gacctggggt aggaacagtt tcttcatgtt aagattctgg
     4201 aggagagctt ctattattag gctacagata aagtcttagc tatatcatgg aaatggagtc
     4261 cacactggtt ctagaacagc atttcccaaa ctgcattctg tcagatgctc tgtagaaaag
     4321 gggtttcatt gagcaaagct tggaaaatga tgcatgttac tctcctgctt gaagatgaca
     4381 gaggatgtgg gcataaagcc tttgaccagt ccttctgtga aaaaaagaaa accgtttaac
     4441 tttgtttaat cctgctttgc ccagattagt gtaaacatgg ttttaaactt accgtcccct
     4501 gggaaaaaac atatttgaaa aatactattt tgagaaaatt attgtaccag gttgccataa
     4561 tgggtagata agaataagat ttccttttcc tttatcagtt attggagaga atctggttca
     4621 aaatcagaat aatttcattt tagcctgcag acatattcat cttgagcgaa tgctggatta
     4681 gtagaatttt atatgtctac aacttgtttc atagcacctt gattttctta atcaggttgt
     4741 ggtattttgt ggagagcaaa atttattctt ttttgtgttg aatggagaac tgaaaaacct
     4801 taaacaaggt tacttctaaa agttgtctaa gagactagta actaatgctt atggctctat
     4861 gggtaatgag tcaataacat tgattcttac tttcagaaag tatagtcagt gaacattttc
     4921 taaatacttt tatatataga acacaatatt tagatctaat tcctgttatt ctttaatgaa
     4981 ggaacaaaca acatcccaaa ttagatacgt tgggagggag ggaggcaaac tattataagt
     5041 tgggcttttg ttttcatcaa caaatttttg agacactttt gtaaccacta gtgtttgcat
     5101 tccttgatac ttgccagcta taaagagaat ccaagagcct aaattattca gaaataacag
     5161 tattccatgt cagggaattg gctatatgta gtacagacaa ttctcccctt tctgcaaata
     5221 ggtttcctgg gacagttaca gaatcctggg cttgctttct cttattccct agccagtttg
     5281 tactcaggga atacagattg atttttttat tagatgagac gtaattgaga agataatcat
     5341 agacaactgt tacagatttt ttgactattt ggatttatct gtaaatgtac agtatattga
     5401 gttaatataa gcaatgcacc ttccatttat aaaatataag atcttggaat gtgcctacca
     5461 tagacactgc atgtttgtct attcactggt taataattta aatcctgtta atggctgtga
     5521 aatctcaata tctaaatgct agacacgttc acagttttgt ctgtttttat ttctttttaa
     5581 agacctccac gttttcaatt tggcacttct ttacctgatc attctgtcac tctgtgattt
     5641 ttaaaatagg gaatgtactt tattttaata atagttctca gaaactctaa aattttggac
     5701 gagggatctg tgcaatctgt ttgtaagtca catcctgtgt tgggcctgat ttttgtaacc
     5761 tctaaagtgg gagggataaa ttaaaagact tccgagttac ctttcagctt taaagttcgg
     5821 tcttctctgc cttttcatat gatgtgtatt agtgctcact ttttacacat ttagagattt
     5881 tatactagtg tgaatggtct gtatttgttt ggcgaggtgt tttgaaggta tatactaaaa
     5941 tatttttcta aatacagctg cctccctgga atacaaatgg taaaaatcat ccagaaaatc
     6001 aaacatgttc aaatgtcatg tgtacttgcc gtaaagcaaa agattactaa tttggagtga
     6061 tggaagtgtt ccatacattt taatagtgat ttttagatcc agagaccctc catatcgtct
     6121 attaacttat ttaatacgtt agagtaacct tgtgagttaa caattttcca gatgagaaag
     6181 caggaccaga aagctcttca caaggcttta atgccataca agtgttcagt gatgatcact
     6241 gctctttata tgcccccttc ctctggggga aaacagtctg aatcactgaa atatctgcat
     6301 agttgagtaa taaaaataaa gatgtattgc tttcaagtct tagagtgaca tgaagtagtc
     6361 ttaactgaat attttttagt ttaattattt gaaccagtcg attgtactaa ctagatgtaa
     6421 ttatcgtatt tatgattagc atattgattt ttgttaagta cttctaagtt attgagggtg
     6481 cttaaaaaat actgaagaaa ctttttagga catgattctt cctttaactt tatttatatg
     6541 attctcatag caaagatttt tttagaaagt aaaactagcc ccaactccta tcttaagtta
     6601 tcatagtttt tgactattaa tcttaattag gcttatctaa atttcatata cagattgata
     6661 atttttcatt ttatatgcat attagatgat aagatgctat tttcgtagag tatatttcta
     6721 ttcacaaact acctaattat tattggcttg atatggagtc ttttaaacct tctaaaaatt
     6781 tgaaatgtaa tttatgtttg agcttttaaa agtggatctt atttaagcaa gttgctggca
     6841 tccttaccag cctttcccta tataattata atgcacttga tgccactgaa cagtaataac
     6901 atgaagaaca ggacccacag tctagactat gttgagtttt aattaaactt tttcagtcat
     6961 aacctgataa gaagcaggct gggtctagaa gttagactgc ggggctgtat taatttcatg
     7021 agccaatgtt aatgtttact gccagcctgc atagcaatgc cagtttgcag ccgtgattgt
     7081 gtatgtgact tttggtaact accgtttata tgtcaagcag ctcagatgtt atggaagtag
     7141 ctcatggtta tttggacaag cagggtaagt aaattcaagt tacatttgaa aaagtgcaat
     7201 taaggaaatc cgagagcaga atgctctttc caggaaaaaa gtgaagtgct tatagaatat
     7261 cctagcatga cagctctttt gaacatacag agaatgttga caaggttcat acagtgggaa
     7321 ttttttaatt cgcggtttgc tactttgtat cgatttaaaa cttcaaggaa ggatgggagg
     7381 gaggttcaag agggaggggg tgtggggaca tgtgtgtgca aatggctgat tcgctttgtt
     7441 gggcaacaga aactaacaca gtattgtgaa acaattatac tccaataaag atgtattaaa
     7501 aaaaagactg aagaaaaaaa aatttcaagg aaggaatagg aacattctag ccaaggagaa
     7561 ctgcgtattt aatttttgct gctaatttaa gcatgcattt ttcacagcta aaagtccttt
     7621 ttaagttttg ttacaaagaa agtccatttt tctatacgga taacattttc ctaagatgga
     7681 aaaaacagat ccactaaaaa aacaaaaaca ccttaattaa ttgtgccttt tctcttgagt
     7741 tgtagggcta ataattagtc aaaaacttgt ttaaactgtg ttttttccct aattcttctc
     7801 atttttcctt aaatctgtcc tccacaaaca gtcacattgt ttgcttttgc ctgttttcag
     7861 gttcctttgg ccagacctca ctatcattgt cagaaattgt tcactaaatg tgtttttctg
     7921 tttgttttat gttgcttcac tttttaagtc accttggcaa aagtatggct gccttttcat
     7981 gtttttaaaa tgaatgcagt gaatagcaat ctttatattt caacccttta aaaagtttgt
     8041 aaaggaaaga aataatgcgg agcaaagaac aaagtctcat tttgaatctg attctcagtt
     8101 tggctgctcg acagcagcaa gtcatttaac ctcatttagt ttttttaatc tacaaaatgt
     8161 ggataataac ctacctcaca gatgtgtgtg agaaactgaa ggcccttgct taaaatacag
     8221 ggtttatcat catatttaat gtaaatccct tccttttttt taatagatct ttgatactga
     8281 ttgataggat gagtatcttg attttaggta agtcttatgt ggtaagaata taggggtaaa
     8341 aatgtttaag accacagttt cacaaattat ggtgttctta tattaaggga ctttaaaaat
     8401 ttcttgaaag tgtcgaacat ccaaatatca aatttgtctt ttgttgcagg agatattcag
     8461 aacttcttaa actgttggct gaagatgcct taatgtacca aaatacagct ttctctccag
     8521 actattcaca aatatctatg gttgtatgct gttttgagtg tttaatgtaa aaaattgtta
     8581 gagaactgtg agctctaagc atagtaatct taatgttgtt ttaggaagaa tgtgttctgt
     8641 accatgtatg cttaaatatc atacagtgac tttttgagtg caacaaacaa aactgaaagt
     8701 tgacagccat taggttgtgt ccatgacaat cataagaaaa tgtaagattg gatattaatt
     8761 gttcagaaaa ttttcaagaa cgctttgcat tcattctttc ttagcccatc tttggaaaaa
     8821 aaaaaaatcc cataggctga tgcatttacc cactgaagca cttgattaca tatctattaa
     8881 aataattttt ttaactgttg aaattgggat cattttctat aattcatttc aggaagagaa
     8941 aaaaaagacc agactcttag tgcttttgtg ttttaataac catcgattca aagttcagtt
     9001 ttgtttgtta tgtatttttt gtgagtgtta aatgatcagt gggaagaatg tcttccagca
     9061 acttgtggta aaggtgtctt cttgaattac acagcatttc atagttatag gttctcccta
     9121 gttaatactt gcactgtaca aactcatagg taacaaacac aaaagagaaa agcagcctat
     9181 catctgatta cttataagct tttttcacaa aaatcaaatt aaagtctctg gttaatttga
     9241 aa
//
LOCUS       XM_032604588            2691 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein kinase AMP-activated catalytic
            subunit alpha 2 (PRKAA2), transcript variant X4, mRNA.
ACCESSION   XM_032604588
VERSION     XM_032604588.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2691
                     /gene="PRKAA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116739822"
     CDS             99..1271
                     /gene="PRKAA2"
                     /codon_start=1
                     /product="5'-AMP-activated protein kinase catalytic
                     subunit alpha-2 isoform X4"
                     /protein_id="XP_032460479.1"
                     /db_xref="GeneID:116739822"
                     /translation="MMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYA
                     LLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIRE
                     HEWFKQDLPSYLFPEDPSYDANVIDDEAVKEVCEKFECTESEVMNSLYSGDPQDQLAV
                     AYHLIIDNRRIMNQASEFYLASSPPTGSFMDDSAMHIPPGLKPHPERMPPLVADSPKA
                     RCPLDALNTTKPKSLAVKKAKWHLGIRSQSKPYDIMAEVYRAMKQLDFEWKVVNAYHL
                     RVRRRNPVTGNYVKMSLQLYLVDNRSYLLDFKSIDDEVVEQRSGSSTPQRSCSAAGLH
                     RPRSSLDSVTAESHLLSGSLTGSLIGSTSSSVPPRLGSHTMDFFEMCASLITTLAR"
     misc_feature    <99..416
                     /gene="PRKAA2"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    465..659
                     /gene="PRKAA2"
                     /note="UBA-like autoinhibitory domain (AID) found in
                     vertebrate 5'-AMP-activated protein kinase catalytic
                     subunit alpha-2 (AMPKalpha-2); Region: UBA_AID_AAPK2;
                     cd14404"
                     /db_xref="CDD:270587"
     misc_feature    795..1262
                     /gene="PRKAA2"
                     /note="C-terminal regulatory domain of 5'-AMP-activated
                     serine/threonine kinase, subunit alpha; Region: AMPKA2_C;
                     cd12200"
                     /db_xref="CDD:213385"
     misc_feature    order(807..827,831..833,846..848,912..920,978..992,
                     1005..1007,1014..1025,1029..1031,1218..1220,1227..1235,
                     1239..1244,1254..1256)
                     /gene="PRKAA2"
                     /note="beta subunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:213385"
     misc_feature    order(807..809,942..944,948..950,1212..1217,1221..1226,
                     1233..1235)
                     /gene="PRKAA2"
                     /note="gamma subunit interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:213385"
ORIGIN      
        1 ctattggatg cacacatgaa tgccaagata gctgattttg gtatgcaact ccagggtcgt
       61 ttagaagtgt gctacctgcc tttgcaggat tatctaatat gatgtcagat ggtgaatttc
      121 tgcgaactag ttgtggctcc ccaaattatg cagcacctga agtcatctca ggcagattgt
      181 atgcaggtcc tgaagttgat atctggagct gcggtgttat cttgtacgct cttctctgtg
      241 gcaccctccc ctttgatgat gagcatgtac ctacgttgtt taagaagatc cgagggggtg
      301 ttttttatat cccagaatat ctcaatcgtt ctgttgccac tctcctgatg catatgctac
      361 aggttgaccc cctgaaacga gcaactatca aagacataag agagcatgaa tggtttaaac
      421 aagatttgcc cagttactta tttcctgaag acccctccta tgatgctaac gtcattgatg
      481 atgaggctgt gaaagaagtg tgtgaaaaat ttgagtgtac agaatcagaa gtaatgaaca
      541 gtttatatag tggtgaccct caagaccagc ttgcagtggc ttatcatctt atcattgaca
      601 atcggagaat aatgaaccaa gccagtgagt tctacctcgc ctctagtccc ccaactggtt
      661 cttttatgga tgatagtgcc atgcatattc ccccaggcct gaaacctcat ccagaaagga
      721 tgccacctct tgtagcagac agccctaaag caagatgtcc gttggatgca ctgaatacaa
      781 ctaagcccaa atctttagct gtgaaaaaag ccaagtggca tcttggaatc cgaagtcaaa
      841 gcaaaccata tgacattatg gctgaagttt accgagctat gaagcagctg gattttgaat
      901 ggaaggtagt gaatgcatac catctacgtg taagaagaag aaatccagtg actggcaatt
      961 atgtgaaaat gagcttacag ctgtacctag ttgacaatag aagctatctt ttggacttta
     1021 aaagcattga tgatgaggtg gtggagcaga ggtctggctc ctcaacgccc cagcggtcct
     1081 gctctgctgc tggcttacac agaccgcgat ccagtttgga ttctgtaact gcggagagcc
     1141 atttgctctc tggttccctc actggctccc tgatcggaag cacatcgtct tcagttccac
     1201 ctcgcctggg cagtcacacc atggattttt ttgaaatgtg tgccagtctg atcactactt
     1261 tagcccgttg atgatctttc ctgagtttct atcatctttc tgtttttgca ctgtgaaaat
     1321 cagatatatt ctttaaatta ttgttttact tatggatatc acatactctg cagtactggt
     1381 tgagagctgt gactatctcc aggggacgct caacaccact gaaatgactg aaagcgtaaa
     1441 agtctgacat ttcatttact gtagatatct gtaattctgt tttgcctctg ataaatttac
     1501 ataggtagta tctttaatac gtgaacatcg atgaaggtta ttgttaatct aaaattgtgg
     1561 attcactaca gatgattaat acccctttac tgggaaacca tctcagtcaa agggtggttg
     1621 ggcaacatct tcttgcttta ctgtttagtg taggtaaatc cagtttgctt cctaaatttc
     1681 agcaggcttt aagctgtgtt tatgcacaag aagattaaaa aaatagccca gacattagta
     1741 agatagtaat taaatgttga aatcctaaga gccagccccc caaatttcag aaaccaagtt
     1801 ctgctagcaa tttttgcaga tattgcccag cgttcaacag aagggctgtg ggcctgaaac
     1861 aggtaacggt catttccagg ttccttaaaa acagctataa ccaactagag gttttatctt
     1921 gagattttcc tgaataacat atttaagagc cttcaaggtt ctactcagta ctggaacata
     1981 tggaattaca tccacctttg tctttttcat aaacttatat cattttacaa catgccttca
     2041 aaatctacgt ttctcagatt ctttttcact ctatttattt ttgtacttca ccaagcatga
     2101 taaaatagac agttaaatga agcaaagcaa aatgtcaaca gtctcttaaa gagaactctc
     2161 atctttgatc tcttattgtg tgtggtggtg tggagctgtg tgtatgtgtg tgtcctgttg
     2221 catcccataa tgctaattat tcatcagaag tttgttactg tatttacccc cctccctcac
     2281 cttccctagt cacctttgtc tttgtttatt gtttgatcct tagtggctaa ttgactcagc
     2341 tttgaaatct tttctggttc tctttctttc ttctatatct tggttgctag ccatccagtt
     2401 tgaaacactg ttctggccct aagggctttt gtgtacttcc aaagtttggt aggctctgac
     2461 tttcactgtt gaacctggta gggcagggaa gccttaaaca ttcaaaaaat tctctcttga
     2521 gtaaatgtat gtgttgttta catatataca tatatgtatt cgcaccagtg cttttaaatg
     2581 aaaaaaccaa acattttttt tttttggctt tgtgcaggtt tttttaaggc tttaaaaaaa
     2641 acaaaaaacc tatatacagc agggtagata atagcccatt gattatattt t
//
LOCUS       XM_032604601            1996 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 51 (TMEM51),
            transcript variant X1, mRNA.
ACCESSION   XM_032604601
VERSION     XM_032604601.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1996
                     /gene="TMEM51"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739835"
     CDS             514..1260
                     /gene="TMEM51"
                     /codon_start=1
                     /product="transmembrane protein 51"
                     /protein_id="XP_032460492.1"
                     /db_xref="GeneID:116739835"
                     /translation="MMAQSKANGSHYALTAIGLGMLVLGVIMAMWNLVPGFSATEKPT
                     AQGNKTEIGSGILKSKTFSVAYVLVGAGVMLLLLSFCLSIRDKRKQRRAEELAHIQHP
                     GVEPHAREEDSQEEEEEASSRYYVPSYEEVMSTNYPEAREPDQNPRMSISLPSYESLT
                     GLDETSPTTTRADVETSPGNPPDRQNSKLAKRLKPLKVRRIKSEKLHLKDFRINLPDK
                     NVPPPSIEPLTPPPQYDEVQEKAPNSRPPD"
     misc_feature    532..1218
                     /gene="TMEM51"
                     /note="Transmembrane protein 51; Region: TMEM51;
                     pfam15345"
                     /db_xref="CDD:464663"
ORIGIN      
        1 tctctcgcgg tccctccctc cggcacgccg gcgcccagcg gccgcgcttc ctgcgtcccc
       61 atcccggtcc gagagcgggc tgcgcgctca ccgcccccgc gctccctcga ccgagattcc
      121 ctggagcccc cagccccggg atcgcgacac ccgaaggagg cagcctgtgg gggccggggt
      181 cgtgtggccc ccagcccccg gccgcccgac cgagaccgag ctggacccgc cgccgccccg
      241 gtggatcctt aactcaagat tttagcatga agagttgttg tcaggcctgc ctggaggctc
      301 cctaggtaac aacagacctc ccggccgcag ctgtccacac gggatgcctc acgtttgctt
      361 gaaaccatcc cttgagagtc tggttgctgt tttttcaggg tggcgctagg gatttagcgc
      421 aaggcgttta cggggttttt gttgctgctg ctgccgtttt ttatttattt attttcttcc
      481 tttgaacccg ggccctgccc cgctcccgct ggcatgatgg cccagtccaa ggccaacggc
      541 tcgcactacg cgctgactgc cattggcctg gggatgctgg tcctcggggt catcatggcc
      601 atgtggaacc tcgtccccgg gttcagcgct accgaaaagc caaccgctca ggggaacaag
      661 acggagatag ggagcggcat tctcaagagc aagaccttct ccgtagccta cgtgctggtc
      721 ggggccgggg taatgctgct gctcctgtcc ttctgcctga gtatccgtga caagaggaag
      781 cagcggcgcg ctgaggagct ggcgcacatc cagcaccccg gggtcgagcc tcacgcccgc
      841 gaggaagaca gccaagagga ggaggaggag gcctcctcaa ggtactacgt ccccagctat
      901 gaggaagtga tgagcacaaa ctacccggaa gcaagggaac cggaccagaa ccccaggatg
      961 agcatctctc tcccctccta cgagtccttg acggggctgg atgagacaag ccccaccaca
     1021 accagggctg acgtggagac cagcccgggg aacccccccg acaggcagaa ctccaagttg
     1081 gccaaacgcc tgaagccgct gaaagttcga aggataaaat ccgaaaagct tcacctcaaa
     1141 gactttagga tcaacctgcc agacaaaaac gtgcctcctc cgtccatcga gcctctgact
     1201 cccccaccac agtacgatga ggtccaagag aaggccccca actcccggcc cccggactga
     1261 cgacccctcc cgggcgtgtt ccctcctgtc actcaacctc cacgccaaca gatcccgaat
     1321 gaagccactc agccactgtt gagaagcgga ggggcccggt gtgtacttag caatttggac
     1381 ggggccgggg ggtgaggggt tctgggattc aagagcgact ctgcagcccc ccaggacctc
     1441 acacagtagg tgcatcggaa agagctgctg cttcggatct cgtgatgctg tgaccccatc
     1501 aagggatggc accggcatct tccccccttg tccttccgcg actctgaatc gccagtgatg
     1561 acactcctca ttccaattag gaaaggatac ctagcaactg gtttagattg tggttctgtt
     1621 ttgcttccac taggactgtt ttgtttccaa aagaagacac gttatgcctt cgctttttcc
     1681 ctggtatcct gaactgtggg taggaaagat gacccgcttt atagaaagga catgggcccg
     1741 ttttgtgaat taagccgaat gagaggctgg atgattaccc tggggtgaga cccaggtggg
     1801 gttctccgag cccctgatgc cgtcagttct tttgagggcc caaagcctgg gatgcataag
     1861 atcctagttt gaattggtag actttcctag tctctcctgt gtaatggcag aaaaaggaaa
     1921 gccgtctggg atgctccgtt ccttctaaaa tgccttgcaa ctgagctttt tgtaataaaa
     1981 tattttatat gtcaca
//
LOCUS       XM_032604609            1853 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 51 (TMEM51),
            transcript variant X2, mRNA.
ACCESSION   XM_032604609
VERSION     XM_032604609.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1853
                     /gene="TMEM51"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116739835"
     CDS             373..1119
                     /gene="TMEM51"
                     /codon_start=1
                     /product="transmembrane protein 51"
                     /protein_id="XP_032460500.1"
                     /db_xref="GeneID:116739835"
                     /translation="MMAQSKANGSHYALTAIGLGMLVLGVIMAMWNLVPGFSATEKPT
                     AQGNKTEIGSGILKSKTFSVAYVLVGAGVMLLLLSFCLSIRDKRKQRRAEELAHIQHP
                     GVEPHAREEDSQEEEEEASSRYYVPSYEEVMSTNYPEAREPDQNPRMSISLPSYESLT
                     GLDETSPTTTRADVETSPGNPPDRQNSKLAKRLKPLKVRRIKSEKLHLKDFRINLPDK
                     NVPPPSIEPLTPPPQYDEVQEKAPNSRPPD"
     misc_feature    391..1077
                     /gene="TMEM51"
                     /note="Transmembrane protein 51; Region: TMEM51;
                     pfam15345"
                     /db_xref="CDD:464663"
ORIGIN      
        1 gaagctgaag caggtgagga aacggattct ctcctaaacc ctccagaagc aatgcagccc
       61 tgctcatacc ttgattttag acctccgacc tccagaaccg tggatcctta actcaagatt
      121 ttagcatgaa gagttgttgt caggcctgcc tggaggctcc ctaggtaaca acagacctcc
      181 cggccgcagc tgtccacacg ggatgcctca cgtttgcttg aaaccatccc ttgagagtct
      241 ggttgctgtt ttttcagggt ggcgctaggg atttagcgca aggcgtttac ggggtttttg
      301 ttgctgctgc tgccgttttt tatttattta ttttcttcct ttgaacccgg gccctgcccc
      361 gctcccgctg gcatgatggc ccagtccaag gccaacggct cgcactacgc gctgactgcc
      421 attggcctgg ggatgctggt cctcggggtc atcatggcca tgtggaacct cgtccccggg
      481 ttcagcgcta ccgaaaagcc aaccgctcag gggaacaaga cggagatagg gagcggcatt
      541 ctcaagagca agaccttctc cgtagcctac gtgctggtcg gggccggggt aatgctgctg
      601 ctcctgtcct tctgcctgag tatccgtgac aagaggaagc agcggcgcgc tgaggagctg
      661 gcgcacatcc agcaccccgg ggtcgagcct cacgcccgcg aggaagacag ccaagaggag
      721 gaggaggagg cctcctcaag gtactacgtc cccagctatg aggaagtgat gagcacaaac
      781 tacccggaag caagggaacc ggaccagaac cccaggatga gcatctctct cccctcctac
      841 gagtccttga cggggctgga tgagacaagc cccaccacaa ccagggctga cgtggagacc
      901 agcccgggga acccccccga caggcagaac tccaagttgg ccaaacgcct gaagccgctg
      961 aaagttcgaa ggataaaatc cgaaaagctt cacctcaaag actttaggat caacctgcca
     1021 gacaaaaacg tgcctcctcc gtccatcgag cctctgactc ccccaccaca gtacgatgag
     1081 gtccaagaga aggcccccaa ctcccggccc ccggactgac gacccctccc gggcgtgttc
     1141 cctcctgtca ctcaacctcc acgccaacag atcccgaatg aagccactca gccactgttg
     1201 agaagcggag gggcccggtg tgtacttagc aatttggacg gggccggggg gtgaggggtt
     1261 ctgggattca agagcgactc tgcagccccc caggacctca cacagtaggt gcatcggaaa
     1321 gagctgctgc ttcggatctc gtgatgctgt gaccccatca agggatggca ccggcatctt
     1381 ccccccttgt ccttccgcga ctctgaatcg ccagtgatga cactcctcat tccaattagg
     1441 aaaggatacc tagcaactgg tttagattgt ggttctgttt tgcttccact aggactgttt
     1501 tgtttccaaa agaagacacg ttatgccttc gctttttccc tggtatcctg aactgtgggt
     1561 aggaaagatg acccgcttta tagaaaggac atgggcccgt tttgtgaatt aagccgaatg
     1621 agaggctgga tgattaccct ggggtgagac ccaggtgggg ttctccgagc ccctgatgcc
     1681 gtcagttctt ttgagggccc aaagcctggg atgcataaga tcctagtttg aattggtaga
     1741 ctttcctagt ctctcctgtg taatggcaga aaaaggaaag ccgtctggga tgctccgttc
     1801 cttctaaaat gccttgcaac tgagcttttt gtaataaaat attttatatg tca
//
LOCUS       XM_032604619            1837 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 51 (TMEM51),
            transcript variant X3, mRNA.
ACCESSION   XM_032604619
VERSION     XM_032604619.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1837
                     /gene="TMEM51"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116739835"
     CDS             357..1103
                     /gene="TMEM51"
                     /codon_start=1
                     /product="transmembrane protein 51"
                     /protein_id="XP_032460510.1"
                     /db_xref="GeneID:116739835"
                     /translation="MMAQSKANGSHYALTAIGLGMLVLGVIMAMWNLVPGFSATEKPT
                     AQGNKTEIGSGILKSKTFSVAYVLVGAGVMLLLLSFCLSIRDKRKQRRAEELAHIQHP
                     GVEPHAREEDSQEEEEEASSRYYVPSYEEVMSTNYPEAREPDQNPRMSISLPSYESLT
                     GLDETSPTTTRADVETSPGNPPDRQNSKLAKRLKPLKVRRIKSEKLHLKDFRINLPDK
                     NVPPPSIEPLTPPPQYDEVQEKAPNSRPPD"
     misc_feature    375..1061
                     /gene="TMEM51"
                     /note="Transmembrane protein 51; Region: TMEM51;
                     pfam15345"
                     /db_xref="CDD:464663"
ORIGIN      
        1 aggaaatgtg acgacagaag cggaggtggg gagatggaga ggaggggccg aggattgcag
       61 gcggcctcta gaagctgaag caggtggatc cttaactcaa gattttagca tgaagagttg
      121 ttgtcaggcc tgcctggagg ctccctaggt aacaacagac ctcccggccg cagctgtcca
      181 cacgggatgc ctcacgtttg cttgaaacca tcccttgaga gtctggttgc tgttttttca
      241 gggtggcgct agggatttag cgcaaggcgt ttacggggtt tttgttgctg ctgctgccgt
      301 tttttattta tttattttct tcctttgaac ccgggccctg ccccgctccc gctggcatga
      361 tggcccagtc caaggccaac ggctcgcact acgcgctgac tgccattggc ctggggatgc
      421 tggtcctcgg ggtcatcatg gccatgtgga acctcgtccc cgggttcagc gctaccgaaa
      481 agccaaccgc tcaggggaac aagacggaga tagggagcgg cattctcaag agcaagacct
      541 tctccgtagc ctacgtgctg gtcggggccg gggtaatgct gctgctcctg tccttctgcc
      601 tgagtatccg tgacaagagg aagcagcggc gcgctgagga gctggcgcac atccagcacc
      661 ccggggtcga gcctcacgcc cgcgaggaag acagccaaga ggaggaggag gaggcctcct
      721 caaggtacta cgtccccagc tatgaggaag tgatgagcac aaactacccg gaagcaaggg
      781 aaccggacca gaaccccagg atgagcatct ctctcccctc ctacgagtcc ttgacggggc
      841 tggatgagac aagccccacc acaaccaggg ctgacgtgga gaccagcccg gggaaccccc
      901 ccgacaggca gaactccaag ttggccaaac gcctgaagcc gctgaaagtt cgaaggataa
      961 aatccgaaaa gcttcacctc aaagacttta ggatcaacct gccagacaaa aacgtgcctc
     1021 ctccgtccat cgagcctctg actcccccac cacagtacga tgaggtccaa gagaaggccc
     1081 ccaactcccg gcccccggac tgacgacccc tcccgggcgt gttccctcct gtcactcaac
     1141 ctccacgcca acagatcccg aatgaagcca ctcagccact gttgagaagc ggaggggccc
     1201 ggtgtgtact tagcaatttg gacggggccg gggggtgagg ggttctggga ttcaagagcg
     1261 actctgcagc cccccaggac ctcacacagt aggtgcatcg gaaagagctg ctgcttcgga
     1321 tctcgtgatg ctgtgacccc atcaagggat ggcaccggca tcttcccccc ttgtccttcc
     1381 gcgactctga atcgccagtg atgacactcc tcattccaat taggaaagga tacctagcaa
     1441 ctggtttaga ttgtggttct gttttgcttc cactaggact gttttgtttc caaaagaaga
     1501 cacgttatgc cttcgctttt tccctggtat cctgaactgt gggtaggaaa gatgacccgc
     1561 tttatagaaa ggacatgggc ccgttttgtg aattaagccg aatgagaggc tggatgatta
     1621 ccctggggtg agacccaggt ggggttctcc gagcccctga tgccgtcagt tcttttgagg
     1681 gcccaaagcc tgggatgcat aagatcctag tttgaattgg tagactttcc tagtctctcc
     1741 tgtgtaatgg cagaaaaagg aaagccgtct gggatgctcc gttccttcta aaatgccttg
     1801 caactgagct ttttgtaata aaatatttta tatgtca
//
LOCUS       XM_032604629            9184 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 51 (TMEM51),
            transcript variant X4, mRNA.
ACCESSION   XM_032604629
VERSION     XM_032604629.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9184
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9184
                     /gene="TMEM51"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 1
                     Protein, and 89% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116739835"
     CDS             7704..8450
                     /gene="TMEM51"
                     /codon_start=1
                     /product="transmembrane protein 51"
                     /protein_id="XP_032460520.1"
                     /db_xref="GeneID:116739835"
                     /translation="MMAQSKANGSHYALTAIGLGMLVLGVIMAMWNLVPGFSATEKPT
                     AQGNKTEIGSGILKSKTFSVAYVLVGAGVMLLLLSFCLSIRDKRKQRRAEELAHIQHP
                     GVEPHAREEDSQEEEEEASSRYYVPSYEEVMSTNYPEAREPDQNPRMSISLPSYESLT
                     GLDETSPTTTRADVETSPGNPPDRQNSKLAKRLKPLKVRRIKSEKLHLKDFRINLPDK
                     NVPPPSIEPLTPPPQYDEVQEKAPNSRPPD"
     misc_feature    7722..8408
                     /gene="TMEM51"
                     /note="Transmembrane protein 51; Region: TMEM51;
                     pfam15345"
                     /db_xref="CDD:464663"
ORIGIN      
        1 tcaggtctta taaaattcac tgatgtctta tactgaggag gggaagctgc ctctcttctc
       61 tgcaagaagt ggtgcatcct gggaggtgtc tgctctccca tctctgtgca ctttcccagg
      121 ctgaaccctt cccatgggac accttatctc ctcctgcccc caaactccgc ccaaggaaag
      181 gttacagatg cctccaggtc ctacacagct gctgctttag cctcctcctt cctgccccct
      241 tcaaagtgaa ttggtcgctc tctctgtagg ctcattttac gtaccccgtc ttagtgctta
      301 gtggtgcaaa gcatgggctt taaaatcagt cataccttac ccctgcctag ctgtgtgacc
      361 ttggaccagt cactttgcct ctctgaacct cagtgtccta ggtagaacta ataactgtta
      421 aatgattatg catggaaaga gctcaacaga gggcctggca ctgagtcggc atccaacgca
      481 cgttccctct tacctgatgt tcacttcctt tctataagaa agaatcacct gtcttcctgc
      541 tggactgtaa aggtagtctc acacatctgt gtatccccca aagcccctgg cacacggtag
      601 ggacccagga attggttgga aacaaattct ttaaaaagtc attttaaaag aaatgcacat
      661 atgttacccc tcatgctctg gtgatgaagt atctccaggg gtgaactgtg tgttgcccat
      721 ttctggcctg cgtgccccac ccagggagtg gcccacgggg ggctggtgtg gtgcaaggga
      781 aaggaggtgg gcttccaagt cagctagatt tgattgtgaa atttgaatct gcagcttaca
      841 gctgtgtgtc ccagggcaaa ttacttaacc tctcggagac tcagatatag tggggctaat
      901 catctttgaa gggcatctgt gaggattgga tgcctttaga aagggtgcct gattccttct
      961 tgaactgttc ctattattat cattactctg cctcgcagtt tactcaatat gctttctttt
     1021 tctttttccc atcagcgctc tctggctcag gcagccctcc tctctcctct acctttagga
     1081 ctcatttgca cagtgctttt cggtttttcc tgagtgcaca gtctacaaga acctgttcta
     1141 aaagaatagg aacccgacac cccttgacct tggctcttgg ggaggtagcc tgaaactccc
     1201 cggtgggaca ggggcagcgg cagcggtggc tcagagcctt tcgtccggcc cccacccctt
     1261 ccctgtggca tgggactgga acttggtgac aaaagtgatt gtgagctgaa actcggccaa
     1321 agggccccac tgaattcttc ctttgtgatg ggaatgtagc acagcctggt tcctgcgaat
     1381 ggagctgggg atccctttcc caattatgca gcttggcagg aagagtttgg ggctcgggga
     1441 gaatggtcaa ggagcctctt tgtcacgggg gccggttgtg ctgccagaca cctccgactg
     1501 ccgagaatct cctcccccta aagctggcca ggctggacgc ttctggaact gtgccttccg
     1561 gggccacagg gcagagctca aaggccacgt gagggtctag atcagagccc aggtttctaa
     1621 actgtgttcc agagaattgc tgggattcgg cgagacgcgg ggcaagggaa ggcttgccca
     1681 tcaacacttg gaagcctgtg ctgtttcagc cagagcactg ctgttttcta tcgtttgatt
     1741 ttctttaaat cattgtcttc atattgtctc tatgtctata tagagagact ctaatccaag
     1801 tgtggactgg tgataatgac cacccccaac gccccacccc cagctcagcc tggtgagcgc
     1861 tcagatgtca gagctgtgac tactctcccc agggcacggc ccctcccctg tccccaggga
     1921 agtccctggc tctggctcta cttggtcaaa gatgtacggg aagaaagaca gcagctgccc
     1981 aggttggagg aacaaagctc tgggtgctta cctacgtgct gggaagacca gggaccagct
     2041 gaaacctcaa aacccaccag ggaatattga tagagtcacc atctcgggtc agaatggaag
     2101 tcccatttaa cctgggtgcc tttcccatgt tgctggcaaa tcatttgcat acagacacaa
     2161 gatgtgggta tcctgaaaat tagctctatc taatcctctc ctcctcggtg ccagccttgg
     2221 actaggcatt tcccctaatt gatatgggac atcagttaaa cttttcaact tgctagatag
     2281 tcattcattc tttctacaaa tagttattaa gcagctggta tggtcttggc acactgtgct
     2341 gggtgctggg catacagagg tgaacaaggc agacgagaac ttactttcag ggagtttacg
     2401 ctccagtggg ggagacaagg aagcaacagg aaagcaaaac gagacgatca tagactgagt
     2461 taatgtcatc catccaggag acggaatgtc atagggaccg aagcatgggg cttgagagta
     2521 gctgggtgag agaggggaca ttacttgtag tgtggtcaag gaaatcctca ctgaggacgt
     2581 ggcatctgaa ctgagaggca gaagtagtaa agaagtggac aaacaaaaga gacaggtgga
     2641 aaggtttcgg gtatcaggaa aagtaagtgc aaaggccctg gggcagggta tgcttggtgt
     2701 gactagaaac agacaggaag ccacagaggg ttggtgagcc aagagataag atatgagaga
     2761 ggcaggagcc cagtctagtc tggtgggatt tgaaggccac agcagaggag ttcagatttt
     2821 atgctaagag ttacggaaag acattgacgg actttcagaa tctcctattg caaaatattc
     2881 cagccagtca gaagagtata tataagatat atgtgacgtt taggaaataa tttgatacac
     2941 atccttgtac ccttcactct tcctccccag ccccatttct cactcctcca gggagataac
     3001 tgttatccta aattttagtt tataattttg cttttcttcc taataattac aaagataaag
     3061 caatacattg cctggttttg aacttcatct aactattata gaatcatgct gtgtgtgttc
     3121 ttctgctatt tgctttcctg ctcaacctca catgtgtcag aatgggccac gctggtgcat
     3181 gtggctgcag tttattcatt ttctctgccg tgtagtactc cactggacta taactgcata
     3241 ggcagctgct gtcgtggttt atcctttctc ctgggacatg acattattcg attttctaat
     3301 gttgaatcaa ctctacattc ttggggtaaa ccttttttaa aaatgttgga ttccgttagg
     3361 tgatattgtg tttaggattt ttgtttctgt gctagcagat caaattgacc tgtcattttc
     3421 ctctcctgcc ttgtcgcttt gggggtcaag attacagatt cctcataacg tgacctgggg
     3481 agtgtttctc ctccttttac tctcaggagc acttgtgtaa gatggagaaa accatggaaa
     3541 gattttatta gtgtagccac catatcatca tccttctgca gccccactct tggtacagaa
     3601 tcttgaattt tttttgcata taccttccct ccaaaaagca aacacgtgcc tcccccagga
     3661 gtacctcaaa ttgacatgct cacagcctac ttagaaagct gcatttctga ttttttacag
     3721 gtggatcctt aactcaagat tttagcatga agagttgttg tcaggcctgc ctggaggctc
     3781 cctaggtaac aacaggtagg tgcctctctt aactggttca ccgttttctt gaaaacccag
     3841 atacaggatc actcacttat cccttagggc tgccttgaac ctgagccatg atggatccaa
     3901 ctcctgggtc cagaggtgag tccggctgag ctgggacccc aggctgttca ccaaggctcc
     3961 tctgttttag ggacatcttg gaaactatgt ggtccaaatc ctctaagcac aaaattagct
     4021 tctttccatt atttttggaa gggaaagaac accatgctaa atataatgtg ggtcaacaag
     4081 ccagaaacaa gataaatagc ttccagctgc acctcaggga actgggtctc cacaccccca
     4141 gtgaaccgtg gagatctggt ctccagaggg agggtggaaa cgacgaacgg ttttgagcta
     4201 ccattggaca cataaccctg ccatgaaccc ccccaaaaaa cacctttatt tcattttctt
     4261 atttgaaaag caacacattt ctgtgttttc caattcttat cctcccagaa agaaaaagaa
     4321 aagaaaaatc attctaatcc cagcacacag agaaaataac tataaacatc atggtttgta
     4381 taatttgagt gttttgaaat ttaatataat acattcattg gtgtctctca accttttctt
     4441 ccccgactat cgttccttcc cggaggagtc tttttagacc ttctttttgt aatgctctcc
     4501 caacccccgc cccatgaaat tgtcatgccc gacatgctgg ggatctgggg gaccactgac
     4561 tattgtaaca ggtaagatta ttttgtacca tccccaagag ccagttgttt cccccttgtg
     4621 ggtgatctca ccccattgag aatgcaggct ttaaataata ttaagtaaca aacctttctg
     4681 taagaattta ccatgtgctg gtcacatact attctaggta ctttaggtct atttactttt
     4741 ttatgtatca taactcccct atgaggtgcg tcctagagag cttttatctc catcttacag
     4801 ttgtggaaac tgaggcacag agaggttaag taacttgtcc aaggtcactc atctgggaag
     4861 gtacagagtg aggatcagag tccaggcagc ctcgttccaa agctcacact taactaccaa
     4921 gctctgttgc cttgtgacaa cacattctga ttgtagaaaa ttcaaaatac agaaatagac
     4981 taaaagttac acttcccaag ccccctccat ccccagaagc aatctttggc acaagtttgg
     5041 aatgtgcccc ttttctggga ttttacatac atgtttgcgt acaggaaagt atattgtctc
     5101 atttatttta acataagtag gatcattcgg cccattcccc tgtatattca tatatacaga
     5161 cccatgtatg gagttttatt aaaattagaa tcacagtgaa catactcttg tttgacttta
     5221 aaatgtatca ttagctgctt tgagaccata attgaataag tgcatgtacc atattttatt
     5281 taaccaaatc cagattattg gctgtttaag tagtttctag tttctcgcta ctgtaaagct
     5341 atgatgaata tccttgccct gtgcataatt cttagaagtg ggaattaaat ggagcctaag
     5401 ggtataaaca tttttgaaac ttttgatcca cgaatgccaa aacttgccat ccagcaacat
     5461 tgtatgaaat tgcccatccc gacaccctca cccacactga gtattagtgc ctgttttcag
     5521 tcattgacaa tttaacaggc cgaaaatgtg ttaattctga catgttcatc tctgcccgtg
     5581 tctctcatcg gggacgtgtt ttactcacgt gacagcataa ggcaaagctt gaattgagaa
     5641 ttaatgagga gaggaagcag ggggagataa catggcccca tcgctggttt agtaaacagg
     5701 ctgtcagcct cctgggaacg aagcctgcct gtctggccct gagcaggtgc tcagtaaatg
     5761 gtttcttcat ctctcctgct tccagcacga ggctcgggct gcacttctcc accacggagc
     5821 cctccaagtc tggccttgtc tccaatccat ttggcaggac ctatgcattc ctagggctgc
     5881 caaacccctc cttcccttcg ccggccgtga gtgatgtgag aaacacacag ccttgtgtat
     5941 accgtagact gttcccggct ggtctcgctg caaatgtctc cagcaggaac ggacggttgc
     6001 ttaacaaaat ctgggcaagg aaatcccagg atgaagggca gaggcgccta caaaggccag
     6061 agctgcccct ctcaccaccc gcggccccaa ccagccctgg cggaaaatca ataaggatgg
     6121 agtcagggct ccctgttcag tgctctgtat gcatacatgt gcctggtcat ataccagcac
     6181 gcatgcatgg gtgtgcatgt atgtacacac acgtgcccag tgcattcagg ggcagatgca
     6241 gatcctatta tgtgaagtgg ggcttctctc acagagactt tccatatgcc ctccagcctg
     6301 acttaagaca cccagctacc tagtgccaca gttcctttct tcccactttc ttattcccag
     6361 tagactgttt tcctgctgac ctggaagccc ccctaattct taacttgctc accagtattt
     6421 ctccagcacc taacactgct tagcagacgc acaagaaata tttgttgagt ggaaaaaaaa
     6481 aaaaagagag aaggaactga cttcaagccg atagaggatg ttatcccaat tatttttaga
     6541 gtatttttga acaaagtggc cagtttcaga tggagcccag tgcttgatga gaaaatatct
     6601 cggcagcatc ggctttcacg tggcctggtt agccgtcctt tcgcaaggag cggaaagaat
     6661 gcagaacggc aaacaggacc ttgcccgtcg aaacagctgt aaagttttac tgttctgcaa
     6721 aagttgctta ggcaggaata acgtaattga ggagtgattg gccaggagcc ttgctcgctg
     6781 gttcccccgc cccctgaaag tcttgttcta ccctcaactc ttcaagtcac tggctgatct
     6841 ggctccctct cccagccagc aaatggttac ggactcccag gatggctgac cgctgccttt
     6901 agcacaaggt ctctgagctg cttcacggga gagggtttct catccagctg ggcacagcag
     6961 ctaagatgaa ggatgtgcag gcttctgccc ctttaagaaa agcaaaactc cgtgtggctg
     7021 aaaagaagcg tgtcttgcgg gacagcttca tccggcctct gttcatttca ttcgtttgat
     7081 tcagcagaca ttttgggggg gggggggccc tgttacgtcc caggagcagg gtgaaaaacg
     7141 tggtcacgga aggagagaga cttgccacgg tagttgctgg tggcttgcgg gacacacaga
     7201 agggcggctg agccccggag atcagagaag ggcagaaatg ccggaggggg tttgcgaagg
     7261 agagggagga agggcgtgag tgggagaggc agggccaggt tgagccgcca tgagcatgat
     7321 tccaaggagc ctggattttg tgccgcggga agtagggagc cattgagggt ggtgagggtc
     7381 cgcagtcggc tgttggaccg ggtcgtatca ctgaccgatg ccggtcagcc aggcgattct
     7441 gccgcaaccg ttgatcatgg ctcaggcatg ccgtcattcg ctctcctcgc catacccggt
     7501 aagagacctc ccggccgcag ctgtccacac gggatgcctc acgtttgctt gaaaccatcc
     7561 cttgagagtc tggttgctgt tttttcaggg tggcgctagg gatttagcgc aaggcgttta
     7621 cggggttttt gttgctgctg ctgccgtttt ttatttattt attttcttcc tttgaacccg
     7681 ggccctgccc cgctcccgct ggcatgatgg cccagtccaa ggccaacggc tcgcactacg
     7741 cgctgactgc cattggcctg gggatgctgg tcctcggggt catcatggcc atgtggaacc
     7801 tcgtccccgg gttcagcgct accgaaaagc caaccgctca ggggaacaag acggagatag
     7861 ggagcggcat tctcaagagc aagaccttct ccgtagccta cgtgctggtc ggggccgggg
     7921 taatgctgct gctcctgtcc ttctgcctga gtatccgtga caagaggaag cagcggcgcg
     7981 ctgaggagct ggcgcacatc cagcaccccg gggtcgagcc tcacgcccgc gaggaagaca
     8041 gccaagagga ggaggaggag gcctcctcaa ggtactacgt ccccagctat gaggaagtga
     8101 tgagcacaaa ctacccggaa gcaagggaac cggaccagaa ccccaggatg agcatctctc
     8161 tcccctccta cgagtccttg acggggctgg atgagacaag ccccaccaca accagggctg
     8221 acgtggagac cagcccgggg aacccccccg acaggcagaa ctccaagttg gccaaacgcc
     8281 tgaagccgct gaaagttcga aggataaaat ccgaaaagct tcacctcaaa gactttagga
     8341 tcaacctgcc agacaaaaac gtgcctcctc cgtccatcga gcctctgact cccccaccac
     8401 agtacgatga ggtccaagag aaggccccca actcccggcc cccggactga cgacccctcc
     8461 cgggcgtgtt ccctcctgtc actcaacctc cacgccaaca gatcccgaat gaagccactc
     8521 agccactgtt gagaagcgga ggggcccggt gtgtacttag caatttggac ggggccgggg
     8581 ggtgaggggt tctgggattc aagagcgact ctgcagcccc ccaggacctc acacagtagg
     8641 tgcatcggaa agagctgctg cttcggatct cgtgatgctg tgaccccatc aagggatggc
     8701 accggcatct tccccccttg tccttccgcg actctgaatc gccagtgatg acactcctca
     8761 ttccaattag gaaaggatac ctagcaactg gtttagattg tggttctgtt ttgcttccac
     8821 taggactgtt ttgtttccaa aagaagacac gttatgcctt cgctttttcc ctggtatcct
     8881 gaactgtggg taggaaagat gacccgcttt atagaaagga catgggcccg ttttgtgaat
     8941 taagccgaat gagaggctgg atgattaccc tggggtgaga cccaggtggg gttctccgag
     9001 cccctgatgc cgtcagttct tttgagggcc caaagcctgg gatgcataag atcctagttt
     9061 gaattggtag actttcctag tctctcctgt gtaatggcag aaaaaggaaa gccgtctggg
     9121 atgctccgtt ccttctaaaa tgccttgcaa ctgagctttt tgtaataaaa tattttatat
     9181 gtca
//
LOCUS       XM_032604640            2246 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 48
            (ZBTB48), transcript variant X1, mRNA.
ACCESSION   XM_032604640
VERSION     XM_032604640.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2246
                     /gene="ZBTB48"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739848"
     CDS             98..2167
                     /gene="ZBTB48"
                     /codon_start=1
                     /product="telomere zinc finger-associated protein isoform
                     X1"
                     /protein_id="XP_032460531.1"
                     /db_xref="GeneID:116739848"
                     /translation="MDGSFVQHSVRVLQELNKQRERGQYCDATLDVGGLVFKAHWSVL
                     ACCSHFFQSLYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAREL
                     RVPEAVELCQSFKPKASVGEAPIGQSGLGKPAPRDVNSHLKEPASLEEEEVSRTLGQT
                     PRDQELSGSPSLQRPQLGLPPQSENPSFLRGKLKQALKLSPPENKEPEDCRVPPRPFE
                     AEGVQLQGGSNEWEVVVQVEDDGDGDYVSETETVPTRRKSNVIRKPCAAEPALSAGSR
                     AAEPAENRKGTAVPVECPTCHKKFLSKYYLKVHNSRKHTGEKPFECPKCGKCYFRKEN
                     LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCASCSQQFMQKK
                     DLQSHMIKLHGAPKPHACPTCAKCFLSRTELQLHEAFKHRGEKLFVCEECGHRASSRN
                     GLQMHIKAKHRNERPYVCEFCSHAFTQKANLNMHLRTHTGEKPFQCHLCGKTFRTQAS
                     LDKHNRTHTGERPFGCEFCEQRFTEKGPLLRHVASRHQEGRPHFCQICGKTFKAVEQL
                     RVHVRRHKGVRKFECTECGYKFTRQAHLRRHMEIHDRVENYNPRQRKLRNLVIEDEKM
                     VVVALQPPTELEVGSAEVIVESLAQGGLASQLPGQRLCAEETFPGPGVMEPSLIITAA
                     IPEDCDT"
     misc_feature    119..442
                     /gene="ZBTB48"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in telomere zinc
                     finger-associated protein (TZAP); Region:
                     BTB_POZ_ZBTB48_TZAP_KR3; cd18232"
                     /db_xref="CDD:349541"
     misc_feature    order(119..136,140..145,152..154,170..172,176..178,
                     215..217,221..223,230..235,251..253,260..262,332..337,
                     341..346)
                     /gene="ZBTB48"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349541"
     misc_feature    974..1039
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(989..991,995..997,1001..1003,1007..1012,1019..1024,
                     1034..1036,1076..1078,1175..1177,1187..1192,1199..1204,
                     1211..1213,1253..1255,1259..1261,1265..1267,1271..1276,
                     1283..1288,1298..1300)
                     /gene="ZBTB48"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1010..1084
                     /gene="ZBTB48"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1061..1216
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    <1220..1477
                     /gene="ZBTB48"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; Region: SFP1; COG5189"
                     /db_xref="CDD:227516"
     misc_feature    1238..1303
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1325..1375
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275370"
     misc_feature    1412..1477
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1487..>1648
                     /gene="ZBTB48"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1499..1561
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1514..1516,1520..1522,1526..1528,1532..1537,
                     1544..1549,1556..1558,1598..1600,1604..1606,1616..1621,
                     1628..1633,1640..1642,1682..1684,1688..1690,1694..1696,
                     1700..1705,1712..1717)
                     /gene="ZBTB48"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1583..1645
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1667..1720
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1754..1816
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1793..1867
                     /gene="ZBTB48"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1832..1900
                     /gene="ZBTB48"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1838..1900
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cgctctgacg tcacgtccgg cggcggcggc ggcggcggcg gcgtcgttgt ctctgtacgg
       61 tcggcccggc gcttaacgcc ggggcagttg acggaccatg gacggctcct tcgtccagca
      121 cagtgtaagg gttctgcagg agctcaacaa gcagcgggag cggggccagt actgcgacgc
      181 caccctggac gtggggggtc tggtgttcaa ggcgcactgg agtgtcctcg cctgctgcag
      241 ccacttcttc cagagcctct atggggatgg ctcagggggc agtgtcgtcc tccctgccgg
      301 cttcgcggag atctttggcc tcctgctgga ctttttctac actggccacc tcgccctcac
      361 ctcggggaac cgggatcagg tgctcctggc agccagggag ttgcgggtgc cagaggctgt
      421 agagctgtgc cagagcttca agcccaaagc ctcagtggga gaggcaccaa ttggccagag
      481 cgggctgggg aaacccgccc ctcgggatgt gaacagccac ctcaaggagc cagcaagctt
      541 ggaggaagag gaagtttcga ggacgctggg tcaaacccca agggatcagg agctcagcgg
      601 tagtcccagc ctccagaggc cccagctcgg tctccctcct cagagtgaga acccctcctt
      661 cctccgtggg aaactcaagc aggctctgaa gcttagtccc cctgagaaca aggagcctga
      721 ggattgcaga gtgcccccaa ggccctttga ggctgaaggt gtccagctgc agggcgggag
      781 taacgagtgg gaagtggtgg ttcaagttga ggatgatggg gatggcgatt atgtttctga
      841 gactgagact gtgccgacca ggaggaaatc aaacgtaatc agaaagccct gtgctgccga
      901 gccagccctg agtgcaggtt cccgggcagc cgagcctgct gagaacagaa aaggtacagc
      961 ggtgccggtt gaatgcccca catgtcataa aaagttcctc agcaaatatt atctaaaagt
     1021 tcacaacagc aggaaacaca ctggggagaa acccttcgag tgtcccaaat gcgggaaatg
     1081 ttactttcgg aaggagaacc tcctggagca cgaagcccga aactgcatga accgctcgga
     1141 acaggtcttc acgtgctccg tgtgccagga gacattccgc cggaggatgg agctgcggct
     1201 gcacatggtg tctcacacgg gggagatgcc ctacaagtgc gcctcctgct cgcagcagtt
     1261 catgcagaag aaggacctgc agagccacat gatcaagctg cacggagcgc ccaagcccca
     1321 cgcgtgtcct acctgtgcca agtgcttctt gtcccggacg gaactgcagc tgcacgaggc
     1381 tttcaagcac cgtggggaga agctctttgt gtgtgaggag tgcggccacc gggcgtcgag
     1441 ccggaacggc ctgcagatgc acatcaaggc caagcacagg aacgagaggc cgtacgtctg
     1501 tgagttctgc agccacgctt tcacccagaa ggccaatctc aacatgcacc tgcgcacgca
     1561 cacaggcgag aagcccttcc agtgccacct ctgcggcaag accttccgca cccaagccag
     1621 cctcgacaag cacaaccgca cccacaccgg cgagaggccc ttcggctgtg agttctgcga
     1681 gcagcgcttc acggagaagg ggcccctgct gaggcacgtg gccagccgcc accaggaggg
     1741 ccggccccac ttctgccaga tctgcgggaa gaccttcaaa gccgtggagc agctgcgcgt
     1801 gcatgtgagg aggcacaagg gggtcaggaa gttcgagtgc accgaatgcg gctacaagtt
     1861 cacccggcag gcccacctgc ggaggcacat ggagatccat gaccgggtgg agaactacaa
     1921 cccccggcag cgcaagctcc ggaacctggt catcgaggac gagaagatgg tggtggtggc
     1981 gctccagccg cccaccgagc tggaggtggg ctcggctgag gtcatcgtgg agtcgctggc
     2041 ccagggtggc ctggcctccc agctccctgg ccagagactg tgtgcggagg agaccttccc
     2101 gggcccgggc gtcatggagc cctcgctcat catcacggcc gccatccccg aggactgtga
     2161 cacgtagtcc tccccgcctc gccgacaccc cccggccccc agcccccttg gccccatccc
     2221 ccaataaacc acatggcttt ggactc
//
LOCUS       XM_032604648            2240 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and BTB domain containing 48
            (ZBTB48), transcript variant X2, mRNA.
ACCESSION   XM_032604648
VERSION     XM_032604648.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2240
                     /gene="ZBTB48"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 3 long SRA reads, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739848"
     CDS             98..2164
                     /gene="ZBTB48"
                     /codon_start=1
                     /product="telomere zinc finger-associated protein isoform
                     X2"
                     /protein_id="XP_032460539.1"
                     /db_xref="GeneID:116739848"
                     /translation="MDGSFVQHSVRVLQELNKQRERGQYCDATLDVGGLVFKAHWSVL
                     ACCSHFFQSLYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAREL
                     RVPEAVELCQSFKPKASVGEAPIGQSGLGKPAPRDVNSHLKEPASLEEEEVSRTLGQT
                     PRDQELSGSPSLQRPQLGLPPQSENPSFLRGKLKQALKLSPPENKEPEDCRVPPRPFE
                     AEGVQLQGGSNEWEVVVQVEDDGDGDYVSETETVPTRRKSNVIRKPCAAEPALSAGSR
                     AAEPAENRKGTAVPVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENL
                     LEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCASCSQQFMQKKD
                     LQSHMIKLHGAPKPHACPTCAKCFLSRTELQLHEAFKHRGEKLFVCEECGHRASSRNG
                     LQMHIKAKHRNERPYVCEFCSHAFTQKANLNMHLRTHTGEKPFQCHLCGKTFRTQASL
                     DKHNRTHTGERPFGCEFCEQRFTEKGPLLRHVASRHQEGRPHFCQICGKTFKAVEQLR
                     VHVRRHKGVRKFECTECGYKFTRQAHLRRHMEIHDRVENYNPRQRKLRNLVIEDEKMV
                     VVALQPPTELEVGSAEVIVESLAQGGLASQLPGQRLCAEETFPGPGVMEPSLIITAAI
                     PEDCDT"
     misc_feature    119..442
                     /gene="ZBTB48"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in telomere zinc
                     finger-associated protein (TZAP); Region:
                     BTB_POZ_ZBTB48_TZAP_KR3; cd18232"
                     /db_xref="CDD:349541"
     misc_feature    order(119..136,140..145,152..154,170..172,176..178,
                     215..217,221..223,230..235,251..253,260..262,332..337,
                     341..346)
                     /gene="ZBTB48"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349541"
     misc_feature    974..1036
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(989..991,995..997,1001..1003,1007..1012,1019..1024,
                     1031..1033,1073..1075,1172..1174,1184..1189,1196..1201,
                     1208..1210,1250..1252,1256..1258,1262..1264,1268..1273,
                     1280..1285,1295..1297)
                     /gene="ZBTB48"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1010..1081
                     /gene="ZBTB48"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1058..1213
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    <1217..1474
                     /gene="ZBTB48"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; Region: SFP1; COG5189"
                     /db_xref="CDD:227516"
     misc_feature    1235..1300
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1322..1372
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275370"
     misc_feature    1409..1474
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1484..>1645
                     /gene="ZBTB48"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1496..1558
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1511..1513,1517..1519,1523..1525,1529..1534,
                     1541..1546,1553..1555,1595..1597,1601..1603,1613..1618,
                     1625..1630,1637..1639,1679..1681,1685..1687,1691..1693,
                     1697..1702,1709..1714)
                     /gene="ZBTB48"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1580..1642
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1664..1717
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1751..1813
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1790..1864
                     /gene="ZBTB48"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1829..1897
                     /gene="ZBTB48"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1835..1897
                     /gene="ZBTB48"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cgctctgacg tcacgtccgg cggcggcggc ggcggcggcg gcgtcgttgt ctctgtacgg
       61 tcggcccggc gcttaacgcc ggggcagttg acggaccatg gacggctcct tcgtccagca
      121 cagtgtaagg gttctgcagg agctcaacaa gcagcgggag cggggccagt actgcgacgc
      181 caccctggac gtggggggtc tggtgttcaa ggcgcactgg agtgtcctcg cctgctgcag
      241 ccacttcttc cagagcctct atggggatgg ctcagggggc agtgtcgtcc tccctgccgg
      301 cttcgcggag atctttggcc tcctgctgga ctttttctac actggccacc tcgccctcac
      361 ctcggggaac cgggatcagg tgctcctggc agccagggag ttgcgggtgc cagaggctgt
      421 agagctgtgc cagagcttca agcccaaagc ctcagtggga gaggcaccaa ttggccagag
      481 cgggctgggg aaacccgccc ctcgggatgt gaacagccac ctcaaggagc cagcaagctt
      541 ggaggaagag gaagtttcga ggacgctggg tcaaacccca agggatcagg agctcagcgg
      601 tagtcccagc ctccagaggc cccagctcgg tctccctcct cagagtgaga acccctcctt
      661 cctccgtggg aaactcaagc aggctctgaa gcttagtccc cctgagaaca aggagcctga
      721 ggattgcaga gtgcccccaa ggccctttga ggctgaaggt gtccagctgc agggcgggag
      781 taacgagtgg gaagtggtgg ttcaagttga ggatgatggg gatggcgatt atgtttctga
      841 gactgagact gtgccgacca ggaggaaatc aaacgtaatc agaaagccct gtgctgccga
      901 gccagccctg agtgcaggtt cccgggcagc cgagcctgct gagaacagaa aaggtacagc
      961 ggtgccggtt gaatgcccca catgtcataa aaagttcctc agcaaatatt atctaaaagt
     1021 tcacaacagg aaacacactg gggagaaacc cttcgagtgt cccaaatgcg ggaaatgtta
     1081 ctttcggaag gagaacctcc tggagcacga agcccgaaac tgcatgaacc gctcggaaca
     1141 ggtcttcacg tgctccgtgt gccaggagac attccgccgg aggatggagc tgcggctgca
     1201 catggtgtct cacacggggg agatgcccta caagtgcgcc tcctgctcgc agcagttcat
     1261 gcagaagaag gacctgcaga gccacatgat caagctgcac ggagcgccca agccccacgc
     1321 gtgtcctacc tgtgccaagt gcttcttgtc ccggacggaa ctgcagctgc acgaggcttt
     1381 caagcaccgt ggggagaagc tctttgtgtg tgaggagtgc ggccaccggg cgtcgagccg
     1441 gaacggcctg cagatgcaca tcaaggccaa gcacaggaac gagaggccgt acgtctgtga
     1501 gttctgcagc cacgctttca cccagaaggc caatctcaac atgcacctgc gcacgcacac
     1561 aggcgagaag cccttccagt gccacctctg cggcaagacc ttccgcaccc aagccagcct
     1621 cgacaagcac aaccgcaccc acaccggcga gaggcccttc ggctgtgagt tctgcgagca
     1681 gcgcttcacg gagaaggggc ccctgctgag gcacgtggcc agccgccacc aggagggccg
     1741 gccccacttc tgccagatct gcgggaagac cttcaaagcc gtggagcagc tgcgcgtgca
     1801 tgtgaggagg cacaaggggg tcaggaagtt cgagtgcacc gaatgcggct acaagttcac
     1861 ccggcaggcc cacctgcgga ggcacatgga gatccatgac cgggtggaga actacaaccc
     1921 ccggcagcgc aagctccgga acctggtcat cgaggacgag aagatggtgg tggtggcgct
     1981 ccagccgccc accgagctgg aggtgggctc ggctgaggtc atcgtggagt cgctggccca
     2041 gggtggcctg gcctcccagc tccctggcca gagactgtgt gcggaggaga ccttcccggg
     2101 cccgggcgtc atggagccct cgctcatcat cacggccgcc atccccgagg actgtgacac
     2161 gtagtcctcc ccgcctcgcc gacacccccc ggcccccagc ccccttggcc ccatccccca
     2221 ataaaccaca tggctttgga
//
LOCUS       XM_032604662            1893 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphoglycerate dehydrogenase (PHGDH),
            transcript variant X1, mRNA.
ACCESSION   XM_032604662
VERSION     XM_032604662.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1893
                     /gene="PHGDH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 6 long SRA reads, 19
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739858"
     CDS             141..1742
                     /gene="PHGDH"
                     /codon_start=1
                     /product="D-3-phosphoglycerate dehydrogenase isoform X1"
                     /protein_id="XP_032460553.1"
                     /db_xref="GeneID:116739858"
                     /translation="MAFANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSQEELIAE
                     LQDCEGLIVRSATKVTSDVINATKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPSGN
                     SLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREV
                     ATRMQSFGMKTIGYDPIISPEVSASFGVQQVPLEEIWPLCDFISVHTPLLPSTTGLLN
                     DSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHE
                     NVISCPHLGASTKEAQSRCGKEIAIQFVDMVKGKSLAGVVNAQALTSAFSPHTKPWIG
                     LAEALGALMQAWAGSPKGTIQVVTQGLSLKNSGNCLTPAVIVGLLKDASRQVEVNLVN
                     AKLLVKESGLDVTTSHSPAAPGEQGCGKCLLTVALAGAPYQAVGWVQGTTPVLQALNG
                     AVFRPEVPLHRGLPLLMFRTHPSNPAMLPTMIGLLAESEVQLLSYQTSMVSDGETWHV
                     MGISSLLPSLEPWKQHATEAFQFHF"
     misc_feature    162..1070
                     /gene="PHGDH"
                     /note="Phosphoglycerate dehydrogenases, NAD-binding and
                     catalytic domains; Region: PGDH_4; cd12173"
                     /db_xref="CDD:240650"
     misc_feature    order(300..305,363..365,369..374,444..446,846..848,
                     987..989,996..998,1014..1016)
                     /gene="PHGDH"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:240650"
     misc_feature    order(372..374,444..446,456..458,594..596,600..608,
                     660..671,756..764,777..779,840..848,918..923,987..989,
                     993..998)
                     /gene="PHGDH"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:240650"
     misc_feature    order(450..455,462..467,471..476,483..488,495..497,
                     501..506,510..515,522..527,531..539,543..545,552..572,
                     576..578,627..629,636..641,924..926,933..941,954..968,
                     972..995,999..1010,1020..1022)
                     /gene="PHGDH"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240650"
     misc_feature    1128..>1361
                     /gene="PHGDH"
                     /note="D-3-phosphoglycerate dehydrogenase intervening
                     domain; Region: PGDH_inter; pfam19304"
                     /db_xref="CDD:437136"
ORIGIN      
        1 agcaggagtg ggagataagg gggagcggga gatcgcgaat cctgcccagt tacacgagcc
       61 agccagagcc ggaacagcag cttctccgtt taggtgtttc tgcccaggga aagccgccga
      121 ttccgaggct gactccagca atggcctttg caaatctacg gaaagtgctt atcagtgata
      181 gcctggaccc ttgctgccgg aagatcctgc aagatggagg gctgcaggtg gtggagaagc
      241 agaacctgag ccaggaggag ctgatagccg agctgcagga ctgcgaaggc cttattgtcc
      301 gctcggccac caaggtgacc tctgatgtca tcaacgcgac caagaagctg caggtggtgg
      361 gccgggctgg cacgggcgtg gacaatgtgg atctggaggc tgcaacaagg aagggcatcc
      421 tggtcatgaa cacccccagt gggaacagcc tcagcgctgc ggagctcacc tgtgggatga
      481 tcatgtgcct ggccagacag attccccagg cgacggcctc catgaaggat ggcaaatggg
      541 aacggaagaa gttcatggga acagagctga atggaaagat cctaggaatt cttggcctgg
      601 gcagaattgg gagagaggtg gccacccgga tgcaatcctt tgggatgaag accatagggt
      661 atgaccccat catttcgcca gaggtctcgg cctccttcgg tgtgcagcag gtgcccttgg
      721 aggagatctg gcctctctgt gactttatct ctgtgcacac acctctcctg ccttccacca
      781 caggcctgct gaacgacagc acctttgccc agtgcaagaa gggggtgcgt gtggtgaact
      841 gtgctcgcgg agggattgtg gacgaaggcg ccctgctccg ggccctgcag tcgggtcagt
      901 gtgctggagc cgcgctggac gttttcacag aggagccacc ccgggaccgg gccttggtgg
      961 accacgagaa cgtcatcagc tgcccccacc tgggcgccag caccaaggag gcccagagcc
     1021 gctgcgggaa agaaattgcc atccagttcg tggacatggt gaaggggaaa tctctggcgg
     1081 gagtagtaaa cgcccaggcc cttaccagtg ccttctctcc acacaccaag ccttggattg
     1141 gtctggcaga agctcttggg gcactgatgc aagcctgggc tgggtccccc aaagggacca
     1201 ttcaggtggt aacacaggga ttgtccctga agaactctgg gaactgcctg acccccgccg
     1261 tcatcgttgg cctcctgaag gatgcttccc gtcaggtgga ggtgaacctg gtgaatgcca
     1321 agctgctggt gaaagagtcc ggcctcgatg taaccacttc ccacagccct gctgcaccag
     1381 gggagcaggg ctgcgggaaa tgcctcctga ccgtggccct ggcaggtgcc ccctaccagg
     1441 ccgtgggctg ggtccagggc accacgcctg tgctgcaggc actcaacgga gctgtcttca
     1501 gaccagaggt gcctctccac cggggcctgc cgctgctcat gttcaggact cacccctcca
     1561 accctgcgat gctgccgacc atgattggcc tcctggcaga gtcggaggtg cagctgctgt
     1621 cctaccagac ctcaatggtg tcggatgggg agacctggca cgtcatgggc atctcctccc
     1681 tgctgcccag cctggagccc tggaagcagc acgcgaccga ggctttccag ttccacttct
     1741 aaccttgggc tcacttgtcc cagcctcgtg ggatttcctg aagaaacaca cccactggga
     1801 gaggagagcc gcattcctgg ggctgacact gcttgtgtct catctgaccc ctgtcgtaca
     1861 gcaataacca cccaataaag agcctacccc gta
//
LOCUS       XM_032604670            1822 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphoglycerate dehydrogenase (PHGDH),
            transcript variant X2, mRNA.
ACCESSION   XM_032604670
VERSION     XM_032604670.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1822
                     /gene="PHGDH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 95% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739858"
     CDS             118..1671
                     /gene="PHGDH"
                     /codon_start=1
                     /product="D-3-phosphoglycerate dehydrogenase isoform X2"
                     /protein_id="XP_032460561.1"
                     /db_xref="GeneID:116739858"
                     /translation="MAFANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSQEELIAE
                     LQDCEGLIVRSATKVTSDVINATKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPSGN
                     SLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREV
                     ATRMQSFGMKTIGYDPIISPEVSASFGVQQVPLEEIWPLCDFISVHTPLLPSTTGLLN
                     DSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHE
                     NVISCPHLGASTKEAQSRCGKEIAIQFVDMVKGKSLAGVVNAQALTSAFSPHTKPWIG
                     LAEALGALMQAWAGSPKGTIQVVTQGLSLKNSGNCLTPAVIVGLLKDASRQVEVTTSH
                     SPAAPGEQGCGKCLLTVALAGAPYQAVGWVQGTTPVLQALNGAVFRPEVPLHRGLPLL
                     MFRTHPSNPAMLPTMIGLLAESEVQLLSYQTSMVSDGETWHVMGISSLLPSLEPWKQH
                     ATEAFQFHF"
     misc_feature    139..1047
                     /gene="PHGDH"
                     /note="Phosphoglycerate dehydrogenases, NAD-binding and
                     catalytic domains; Region: PGDH_4; cd12173"
                     /db_xref="CDD:240650"
     misc_feature    order(277..282,340..342,346..351,421..423,823..825,
                     964..966,973..975,991..993)
                     /gene="PHGDH"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:240650"
     misc_feature    order(349..351,421..423,433..435,571..573,577..585,
                     637..648,733..741,754..756,817..825,895..900,964..966,
                     970..975)
                     /gene="PHGDH"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:240650"
     misc_feature    order(427..432,439..444,448..453,460..465,472..474,
                     478..483,487..492,499..504,508..516,520..522,529..549,
                     553..555,604..606,613..618,901..903,910..918,931..945,
                     949..972,976..987,997..999)
                     /gene="PHGDH"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240650"
ORIGIN      
        1 agcgggagat cgcgaatcct gcccagttac acgagccagc cagagccgga acagcagctt
       61 ctccgtttag gtgtttctgc ccagggaaag ccgccgattc cgaggctgac tccagcaatg
      121 gcctttgcaa atctacggaa agtgcttatc agtgatagcc tggacccttg ctgccggaag
      181 atcctgcaag atggagggct gcaggtggtg gagaagcaga acctgagcca ggaggagctg
      241 atagccgagc tgcaggactg cgaaggcctt attgtccgct cggccaccaa ggtgacctct
      301 gatgtcatca acgcgaccaa gaagctgcag gtggtgggcc gggctggcac gggcgtggac
      361 aatgtggatc tggaggctgc aacaaggaag ggcatcctgg tcatgaacac ccccagtggg
      421 aacagcctca gcgctgcgga gctcacctgt gggatgatca tgtgcctggc cagacagatt
      481 ccccaggcga cggcctccat gaaggatggc aaatgggaac ggaagaagtt catgggaaca
      541 gagctgaatg gaaagatcct aggaattctt ggcctgggca gaattgggag agaggtggcc
      601 acccggatgc aatcctttgg gatgaagacc atagggtatg accccatcat ttcgccagag
      661 gtctcggcct ccttcggtgt gcagcaggtg cccttggagg agatctggcc tctctgtgac
      721 tttatctctg tgcacacacc tctcctgcct tccaccacag gcctgctgaa cgacagcacc
      781 tttgcccagt gcaagaaggg ggtgcgtgtg gtgaactgtg ctcgcggagg gattgtggac
      841 gaaggcgccc tgctccgggc cctgcagtcg ggtcagtgtg ctggagccgc gctggacgtt
      901 ttcacagagg agccaccccg ggaccgggcc ttggtggacc acgagaacgt catcagctgc
      961 ccccacctgg gcgccagcac caaggaggcc cagagccgct gcgggaaaga aattgccatc
     1021 cagttcgtgg acatggtgaa ggggaaatct ctggcgggag tagtaaacgc ccaggccctt
     1081 accagtgcct tctctccaca caccaagcct tggattggtc tggcagaagc tcttggggca
     1141 ctgatgcaag cctgggctgg gtcccccaaa gggaccattc aggtggtaac acagggattg
     1201 tccctgaaga actctgggaa ctgcctgacc cccgccgtca tcgttggcct cctgaaggat
     1261 gcttcccgtc aggtggaggt aaccacttcc cacagccctg ctgcaccagg ggagcagggc
     1321 tgcgggaaat gcctcctgac cgtggccctg gcaggtgccc cctaccaggc cgtgggctgg
     1381 gtccagggca ccacgcctgt gctgcaggca ctcaacggag ctgtcttcag accagaggtg
     1441 cctctccacc ggggcctgcc gctgctcatg ttcaggactc acccctccaa ccctgcgatg
     1501 ctgccgacca tgattggcct cctggcagag tcggaggtgc agctgctgtc ctaccagacc
     1561 tcaatggtgt cggatgggga gacctggcac gtcatgggca tctcctccct gctgcccagc
     1621 ctggagccct ggaagcagca cgcgaccgag gctttccagt tccacttcta accttgggct
     1681 cacttgtccc agcctcgtgg gatttcctga agaaacacac ccactgggag aggagagccg
     1741 cattcctggg gctgacactg cttgtgtctc atctgacccc tgtcgtacag caataaccac
     1801 ccaataaaga gcctaccccg ta
//
LOCUS       XM_032604684            5845 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSX family member 2 interacting protein
            (SSX2IP), transcript variant X1, mRNA.
ACCESSION   XM_032604684
VERSION     XM_032604684.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5845
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5845
                     /gene="SSX2IP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739867"
     CDS             223..2079
                     /gene="SSX2IP"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X1"
                     /protein_id="XP_032460575.1"
                     /db_xref="GeneID:116739867"
                     /translation="MGDWMTVTDPGLSSESKYISQYTSETKMSPSSLYSQQVLCSSIP
                     LSKNVHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESKGKETKRGLNIVAVLNC
                     MNELLVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREMIGLQERDR
                     QLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMN
                     KKDKKIAMEVLNYVGRADGKRGSWRTGKTEASFFLRNEDEMYKILLNDYEYRQKQILM
                     ENAELKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDIEEDAGELSRESTWDLS
                     CETVREQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLEL
                     EIQQCKEMIKTQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNF
                     EKERRSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSSD
                     WDNPTVHSRPRQKKPHGAPSGSPVCTSKLTKSLPASPSTSDFCQTRSCVSEYSSISVL
                     NTTPEESKPNQVGRECTNQKWSVASRPDSQEGCCSGCSSTHADAHIEKDDLP"
     misc_feature    409..864
                     /gene="SSX2IP"
                     /note="Afadin- and alpha -actinin-Binding; Region: ADIP;
                     pfam11559"
                     /db_xref="CDD:463295"
     misc_feature    <550..>1302
                     /gene="SSX2IP"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
ORIGIN      
        1 gggagctgga ggtggaggcg gggccgccgg cccgggcgct gcgtgccgcg gcgcctgtgc
       61 gggccctcgg ggcggcgcga gcaggtctag gacgctgatc ggtgcgtttc cgccgcaccc
      121 gggggccgtg acggagatgc ctacatagaa gagtgacagc agctgggctg aatgtttcac
      181 tgctgaactg gttcctcagg tatcctggct ctggcgattg ctatgggaga ttggatgact
      241 gttacagatc caggtctgtc ttcagaaagc aaatatatct ctcaatatac ctcagaaaca
      301 aagatgtctc catcaagttt atactcacag caagtgctat gctcttcaat acctttatca
      361 aaaaatgtgc acagtttttt tagtgccttc tgcacagaag agaatattga gcaaagtatt
      421 tcatatcttg atcaggaatt gactactttc ggttttcctt cattatatga agaatccaaa
      481 ggtaaagaga caaagagagg attaaatata gttgctgttt taaattgtat gaatgagcta
      541 cttgtacttc agcggaagaa ccttctagct caggaaaatg tggaaacaca gaatctgaaa
      601 ctgggaagcg atatggacca tttgcagaac tgctatgcaa aacttaagga gcagctggaa
      661 acctccagga gagaaatgat tggtcttcag gaaagagaca gacagttaca atgcaagaac
      721 aggaatttgc atcagctact gaaaaatgag aaagatgagg tgcagaaatt acaaaacatt
      781 attgcaagtc gagctactca atataatcat gatatgaaga gaaaagagcg tgaatataat
      841 aaactaaagg aacgtctaca tcaacttgtt atgaacaaga aggataaaaa aatagctatg
      901 gaagttttaa attacgtggg gagagccgat ggaaaaagag gctcctggag gacgggtaaa
      961 actgaagcca gtttctttct caggaacgaa gatgaaatgt ataaaattct cttgaatgat
     1021 tatgaatatc gtcagaaaca aatcctaatg gaaaatgctg aacttaagaa ggttcttcag
     1081 caaatgaaaa aggaaatgat ttctcttctt tctccccaaa agcagaaacc tagagaaaga
     1141 gcagatgata gtacaggaac tgttatctct gatattgaag aagatgctgg ggaactgagt
     1201 agagagagta cgtgggacct ttcctgtgaa actgtgagag agcagcttac caacagcatc
     1261 agaaaacagt ggagaatttt gaaaagtcat gtagaaaaac ttgataacca agtttcaaag
     1321 gtacacctag aaggttttaa tgatgaagat gtaatctcac gtcaagacca tgaacaagaa
     1381 actgaaaaac ttgagttaga aattcaacag tgtaaagaaa tgattaaaac tcagcagcaa
     1441 cttttacagc agcagcttgc tactgcgtgt gatgatgaca ccacttcact gctccgagac
     1501 tgttacttgt tggaagagaa ggaacgcctc aaagaagaat ggtccctatt taaggagcaa
     1561 aagaagaatt tcgagaaaga aagacgaagc tttacagaag cagctattcg cctaggattg
     1621 gagagaaagg catttgaaga agaaagagcc agttggttaa agcaacagtt tctaaatatg
     1681 actacctttg accaccagaa ctcagaaaat gtgaaacttt tcagtgcctt ctcaggaagt
     1741 tctgattggg acaaccctac agtacactcg aggccacggc aaaagaagcc tcacggtgca
     1801 cctagtgggt ctccagtttg cacgtctaaa cttactaaat ctcttcctgc ttctccttct
     1861 acttcagact tttgccagac gcgttcctgt gtatctgaat atagttcaat cagtgtacta
     1921 aatacaaccc ctgaagaatc taagccaaat caggttggaa gagaatgtac aaatcagaag
     1981 tggagcgtgg catcaaggcc tgattcacag gaaggttgct gtagtggatg ctcctcgacc
     2041 cacgcagacg ctcacataga gaaggatgac ttaccttaga cttgtgaact gggatttttt
     2101 tttttcttca ttaacatgtt catcaaattt cacatctgag ttgaaacagg gtgtgttata
     2161 aagtcaatca tctctaataa tttaaaatgg tctgtgttgt ttgtttggac ttccctgttc
     2221 ctcccccaaa gagctaaaat gttaaatcta tttaaaagga tataaaagct ttggatatgt
     2281 atttttagta acagaagcac ctggttctgt gaataaagga atgtatgaac gtttggatac
     2341 aaacaaagca ctagaaagag tttcctctta taggtattaa aaatagcact tttaggaaac
     2401 tgattattgt aaatgtttaa ttttgtctca tatatagttg gcattggaag tttagccttt
     2461 ccttgaatgt atactgtagc tttttaacaa agcaagttat atatttatta tgtttagtgt
     2521 gatttgaaat accctctttc atatgtttta aataaagtga aatttatgta tgttttgtac
     2581 atagatatac atgattatgt taagaggctt taagatttaa agattttaca catccataat
     2641 tatagtattt catgccaata aaatttttat tagtgacatt ctgtttacag atgtattaga
     2701 gccattgcca ccttatgttt aagaattttt tgaacccatc tgagcaataa atactgaaaa
     2761 ggtattccat gaagccaaga tctttagatc attaacatta ctaatgttac attttggaga
     2821 tttctacagc attaggtttt tttaatatgc aggatattac aacttttcaa aggattattg
     2881 attttagcgt aatagaggtg agtcaagagt acctttggat gaaacaattt aagaatattg
     2941 gcttaggata tttggatgat agaagatatt aagatattta agatgtttgg atggtgatat
     3001 tttctctacc agatgggtac ccataccgta acacctatac cagcaaaggc tttgtacagt
     3061 tgccaataat tctttaataa tttttcaatg agatatttac tgatagggaa atctgataac
     3121 ataaaagcat cagattttat agtccagata tggtactctg gacaaacttg tcatttcact
     3181 ttcaggactg attgcatgat tcttcatggt tgttattgtt attattattg atagtaagaa
     3241 taatgtaagt gtgggcccaa gcactttcct agaattttca tcagaaagct ttaagtacct
     3301 aactctattt gtctctgcat gtagaagcct acatatatcc agtccttgct ataggtattg
     3361 tagtttaggc ccatctgcct tcccattttc tagcagttta accgtttgta ttcactcacc
     3421 tggttgtggc tgttcagttt aagtttgtca tgttaaaaag tacttttgtc gggcttccct
     3481 ggtggcgcag tggttgagag tccgcctgcc gatgcagggg acacgggttc gtgccccggt
     3541 ctgggaagat cccacatgcc gcggcacggc tgggcccgtg agccatggcc gctgagcctg
     3601 cgcgtccgga gcctgtgctc cgcagcggga gaggccacaa cagtgagagg cccatgtact
     3661 gtaaaaaaaa agaaagtact tttgtcatcc actcactcac tatatatata actttggagt
     3721 tgcatagcag cagccatttt ttcagggtta atagcatatt attgagtatc ttgtaagaca
     3781 ttagtgaaag tgctcatgag aaagtagtac cacatttata gtctcaaaaa gctggctctt
     3841 gagcaaaagc aaattagtca ccgcattcag cttggtgcat gccccttttt taccatttaa
     3901 aaatattaga aatgatgcag aatttcagga gtagtaccat actccaaagg aagaaacagc
     3961 tgtgatatcg ttcttttgct attgagcaat aacgtgatca aagaaaagca atcagatttt
     4021 ctaaataggc agtgatacat ttgtcaagaa ttggggggtt tttttcaggg ctttccgtga
     4081 tatacttggc tagaaacagt gttctaattt tcagagtaat ctcttatttt aggaatattg
     4141 cattccacaa tgatgaagtt ctacaaagca gcatcagttt tttgtttttt tcattttaaa
     4201 gttggttgaa ttctcatatt ggagagagaa attcccttga gacttacttt gaaatctaag
     4261 gtgtgaaaga aacagtaaaa tgaaagccag gatcattgtg cttttgataa aagatctgcc
     4321 agtagttgta tgttttactt aacagcgtag agtttgcttt acattccagc tccaatgatg
     4381 attcctaggc acgctaaact tcctagaatg ttgaaacggt ttccatgctg gataactcct
     4441 gactccacac ataaaactcc tagattttat ttgccttccc tctctaggtg tttgcagttt
     4501 actagtaata cagccgtgct gcagtcttgc atttagccaa gatgaggtga gagagaacca
     4561 tgttcgcttt tgcttgaaag tcttcctgac cattttcagt gtcttcttct ttatcaggat
     4621 gcagatctga aacattctgt gccttatttg tttttatcca ttttgaattt tcaaagcata
     4681 aaagtggcaa agaaaattta agagatttta tttcctactc ttaaattttt atatcttcaa
     4741 tttatgatga gaaacttaat agaagaacaa tcctaccaga aaattaagat taaacttaat
     4801 aaatagatac tttcttgtag aagcaatgta ttaaatgtgt agattcacgg aacaatccat
     4861 ggcaaattgt tttcctcatg gtataattaa aatactgtcg ttacttagaa ttgcattttt
     4921 cgtacctttg ctgaccagac ttgttcatag gcccgtggta acactttttt gggggaaaca
     4981 tattccatgg tacatggtga gaaggagagc gccctagaat ccagttttga cctgccctgg
     5041 tggagcgttt gagaacgccc ggaatgccag gagaggtttt gcagtgtgta tgcacagaat
     5101 gctgtgagct agcaaacccc ttatgtgatt gccctgttgt aaaagtcttg aacacctgtt
     5161 gcctgatgta aatcatgttc ttatttctag attggattta aattaagtat gggtcttgga
     5221 agtctagtaa atatacttct ccctatgttt gtccttaatt tttttcattc ttttcataag
     5281 catataaaag tagctgctgt gtgtcagggc ttattactac cttctagtta ctggggaggg
     5341 aaagacaact aagcacgctc cctaccactg agaatctctg ggttgagtgg aagaccagct
     5401 atataaacct aaattgtcat aaacaatggg agatgctgtt cagacattcg gtctggtgat
     5461 aaaacttgga ctcgttgttc tgctccagga tcacgtatcc gtctcctaac agtgacgtgg
     5521 caagcttcta gttaaagagt ctttgcatta tttcctatgg gaagaactat gtaattaata
     5581 tattactgtt ttgtttttgt tgggtgttgg gttttgtttt tgttttctac aatcaaaata
     5641 cctgcaaagc agcattaagg atttctgccc acaagaacat gtattattat ctaatagaaa
     5701 aagaatctac aaagatttgg gccatgtaga taagggtaat gaaataggtt attctagtca
     5761 tttctctaaa tatgatgttt ttttcaggtt ggatgtagat taaagtggaa tggactgatt
     5821 aaattatttg atttatataa aaata
//
LOCUS       XM_032604693            5842 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSX family member 2 interacting protein
            (SSX2IP), transcript variant X2, mRNA.
ACCESSION   XM_032604693
VERSION     XM_032604693.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5842
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5842
                     /gene="SSX2IP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739867"
     CDS             223..2076
                     /gene="SSX2IP"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X2"
                     /protein_id="XP_032460584.1"
                     /db_xref="GeneID:116739867"
                     /translation="MGDWMTVTDPGLSSESKYISQYTSETKMSPSSLYSQQVLCSSIP
                     LSKNVHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESKGKETKRGLNIVAVLNC
                     MNELLVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREMIGLQERDR
                     QLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMN
                     KKDKKIAMEVLNYVGRADGKRGSWRTGKTEASFFLRNEDEMYKILLNDYEYRQKQILM
                     ENAELKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDIEEDAGELSRESTWDLS
                     CETVREQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLEL
                     EIQQCKEMIKTQQQLLQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFE
                     KERRSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSSDW
                     DNPTVHSRPRQKKPHGAPSGSPVCTSKLTKSLPASPSTSDFCQTRSCVSEYSSISVLN
                     TTPEESKPNQVGRECTNQKWSVASRPDSQEGCCSGCSSTHADAHIEKDDLP"
     misc_feature    409..864
                     /gene="SSX2IP"
                     /note="Afadin- and alpha -actinin-Binding; Region: ADIP;
                     pfam11559"
                     /db_xref="CDD:463295"
     misc_feature    <550..>1302
                     /gene="SSX2IP"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
ORIGIN      
        1 gggagctgga ggtggaggcg gggccgccgg cccgggcgct gcgtgccgcg gcgcctgtgc
       61 gggccctcgg ggcggcgcga gcaggtctag gacgctgatc ggtgcgtttc cgccgcaccc
      121 gggggccgtg acggagatgc ctacatagaa gagtgacagc agctgggctg aatgtttcac
      181 tgctgaactg gttcctcagg tatcctggct ctggcgattg ctatgggaga ttggatgact
      241 gttacagatc caggtctgtc ttcagaaagc aaatatatct ctcaatatac ctcagaaaca
      301 aagatgtctc catcaagttt atactcacag caagtgctat gctcttcaat acctttatca
      361 aaaaatgtgc acagtttttt tagtgccttc tgcacagaag agaatattga gcaaagtatt
      421 tcatatcttg atcaggaatt gactactttc ggttttcctt cattatatga agaatccaaa
      481 ggtaaagaga caaagagagg attaaatata gttgctgttt taaattgtat gaatgagcta
      541 cttgtacttc agcggaagaa ccttctagct caggaaaatg tggaaacaca gaatctgaaa
      601 ctgggaagcg atatggacca tttgcagaac tgctatgcaa aacttaagga gcagctggaa
      661 acctccagga gagaaatgat tggtcttcag gaaagagaca gacagttaca atgcaagaac
      721 aggaatttgc atcagctact gaaaaatgag aaagatgagg tgcagaaatt acaaaacatt
      781 attgcaagtc gagctactca atataatcat gatatgaaga gaaaagagcg tgaatataat
      841 aaactaaagg aacgtctaca tcaacttgtt atgaacaaga aggataaaaa aatagctatg
      901 gaagttttaa attacgtggg gagagccgat ggaaaaagag gctcctggag gacgggtaaa
      961 actgaagcca gtttctttct caggaacgaa gatgaaatgt ataaaattct cttgaatgat
     1021 tatgaatatc gtcagaaaca aatcctaatg gaaaatgctg aacttaagaa ggttcttcag
     1081 caaatgaaaa aggaaatgat ttctcttctt tctccccaaa agcagaaacc tagagaaaga
     1141 gcagatgata gtacaggaac tgttatctct gatattgaag aagatgctgg ggaactgagt
     1201 agagagagta cgtgggacct ttcctgtgaa actgtgagag agcagcttac caacagcatc
     1261 agaaaacagt ggagaatttt gaaaagtcat gtagaaaaac ttgataacca agtttcaaag
     1321 gtacacctag aaggttttaa tgatgaagat gtaatctcac gtcaagacca tgaacaagaa
     1381 actgaaaaac ttgagttaga aattcaacag tgtaaagaaa tgattaaaac tcagcagcaa
     1441 cttttacagc agcttgctac tgcgtgtgat gatgacacca cttcactgct ccgagactgt
     1501 tacttgttgg aagagaagga acgcctcaaa gaagaatggt ccctatttaa ggagcaaaag
     1561 aagaatttcg agaaagaaag acgaagcttt acagaagcag ctattcgcct aggattggag
     1621 agaaaggcat ttgaagaaga aagagccagt tggttaaagc aacagtttct aaatatgact
     1681 acctttgacc accagaactc agaaaatgtg aaacttttca gtgccttctc aggaagttct
     1741 gattgggaca accctacagt acactcgagg ccacggcaaa agaagcctca cggtgcacct
     1801 agtgggtctc cagtttgcac gtctaaactt actaaatctc ttcctgcttc tccttctact
     1861 tcagactttt gccagacgcg ttcctgtgta tctgaatata gttcaatcag tgtactaaat
     1921 acaacccctg aagaatctaa gccaaatcag gttggaagag aatgtacaaa tcagaagtgg
     1981 agcgtggcat caaggcctga ttcacaggaa ggttgctgta gtggatgctc ctcgacccac
     2041 gcagacgctc acatagagaa ggatgactta ccttagactt gtgaactggg attttttttt
     2101 ttcttcatta acatgttcat caaatttcac atctgagttg aaacagggtg tgttataaag
     2161 tcaatcatct ctaataattt aaaatggtct gtgttgtttg tttggacttc cctgttcctc
     2221 ccccaaagag ctaaaatgtt aaatctattt aaaaggatat aaaagctttg gatatgtatt
     2281 tttagtaaca gaagcacctg gttctgtgaa taaaggaatg tatgaacgtt tggatacaaa
     2341 caaagcacta gaaagagttt cctcttatag gtattaaaaa tagcactttt aggaaactga
     2401 ttattgtaaa tgtttaattt tgtctcatat atagttggca ttggaagttt agcctttcct
     2461 tgaatgtata ctgtagcttt ttaacaaagc aagttatata tttattatgt ttagtgtgat
     2521 ttgaaatacc ctctttcata tgttttaaat aaagtgaaat ttatgtatgt tttgtacata
     2581 gatatacatg attatgttaa gaggctttaa gatttaaaga ttttacacat ccataattat
     2641 agtatttcat gccaataaaa tttttattag tgacattctg tttacagatg tattagagcc
     2701 attgccacct tatgtttaag aattttttga acccatctga gcaataaata ctgaaaaggt
     2761 attccatgaa gccaagatct ttagatcatt aacattacta atgttacatt ttggagattt
     2821 ctacagcatt aggttttttt aatatgcagg atattacaac ttttcaaagg attattgatt
     2881 ttagcgtaat agaggtgagt caagagtacc tttggatgaa acaatttaag aatattggct
     2941 taggatattt ggatgataga agatattaag atatttaaga tgtttggatg gtgatatttt
     3001 ctctaccaga tgggtaccca taccgtaaca cctataccag caaaggcttt gtacagttgc
     3061 caataattct ttaataattt ttcaatgaga tatttactga tagggaaatc tgataacata
     3121 aaagcatcag attttatagt ccagatatgg tactctggac aaacttgtca tttcactttc
     3181 aggactgatt gcatgattct tcatggttgt tattgttatt attattgata gtaagaataa
     3241 tgtaagtgtg ggcccaagca ctttcctaga attttcatca gaaagcttta agtacctaac
     3301 tctatttgtc tctgcatgta gaagcctaca tatatccagt ccttgctata ggtattgtag
     3361 tttaggccca tctgccttcc cattttctag cagtttaacc gtttgtattc actcacctgg
     3421 ttgtggctgt tcagtttaag tttgtcatgt taaaaagtac ttttgtcggg cttccctggt
     3481 ggcgcagtgg ttgagagtcc gcctgccgat gcaggggaca cgggttcgtg ccccggtctg
     3541 ggaagatccc acatgccgcg gcacggctgg gcccgtgagc catggccgct gagcctgcgc
     3601 gtccggagcc tgtgctccgc agcgggagag gccacaacag tgagaggccc atgtactgta
     3661 aaaaaaaaga aagtactttt gtcatccact cactcactat atatataact ttggagttgc
     3721 atagcagcag ccattttttc agggttaata gcatattatt gagtatcttg taagacatta
     3781 gtgaaagtgc tcatgagaaa gtagtaccac atttatagtc tcaaaaagct ggctcttgag
     3841 caaaagcaaa ttagtcaccg cattcagctt ggtgcatgcc ccttttttac catttaaaaa
     3901 tattagaaat gatgcagaat ttcaggagta gtaccatact ccaaaggaag aaacagctgt
     3961 gatatcgttc ttttgctatt gagcaataac gtgatcaaag aaaagcaatc agattttcta
     4021 aataggcagt gatacatttg tcaagaattg gggggttttt ttcagggctt tccgtgatat
     4081 acttggctag aaacagtgtt ctaattttca gagtaatctc ttattttagg aatattgcat
     4141 tccacaatga tgaagttcta caaagcagca tcagtttttt gtttttttca ttttaaagtt
     4201 ggttgaattc tcatattgga gagagaaatt cccttgagac ttactttgaa atctaaggtg
     4261 tgaaagaaac agtaaaatga aagccaggat cattgtgctt ttgataaaag atctgccagt
     4321 agttgtatgt tttacttaac agcgtagagt ttgctttaca ttccagctcc aatgatgatt
     4381 cctaggcacg ctaaacttcc tagaatgttg aaacggtttc catgctggat aactcctgac
     4441 tccacacata aaactcctag attttatttg ccttccctct ctaggtgttt gcagtttact
     4501 agtaatacag ccgtgctgca gtcttgcatt tagccaagat gaggtgagag agaaccatgt
     4561 tcgcttttgc ttgaaagtct tcctgaccat tttcagtgtc ttcttcttta tcaggatgca
     4621 gatctgaaac attctgtgcc ttatttgttt ttatccattt tgaattttca aagcataaaa
     4681 gtggcaaaga aaatttaaga gattttattt cctactctta aatttttata tcttcaattt
     4741 atgatgagaa acttaataga agaacaatcc taccagaaaa ttaagattaa acttaataaa
     4801 tagatacttt cttgtagaag caatgtatta aatgtgtaga ttcacggaac aatccatggc
     4861 aaattgtttt cctcatggta taattaaaat actgtcgtta cttagaattg catttttcgt
     4921 acctttgctg accagacttg ttcataggcc cgtggtaaca cttttttggg ggaaacatat
     4981 tccatggtac atggtgagaa ggagagcgcc ctagaatcca gttttgacct gccctggtgg
     5041 agcgtttgag aacgcccgga atgccaggag aggttttgca gtgtgtatgc acagaatgct
     5101 gtgagctagc aaacccctta tgtgattgcc ctgttgtaaa agtcttgaac acctgttgcc
     5161 tgatgtaaat catgttctta tttctagatt ggatttaaat taagtatggg tcttggaagt
     5221 ctagtaaata tacttctccc tatgtttgtc cttaattttt ttcattcttt tcataagcat
     5281 ataaaagtag ctgctgtgtg tcagggctta ttactacctt ctagttactg gggagggaaa
     5341 gacaactaag cacgctccct accactgaga atctctgggt tgagtggaag accagctata
     5401 taaacctaaa ttgtcataaa caatgggaga tgctgttcag acattcggtc tggtgataaa
     5461 acttggactc gttgttctgc tccaggatca cgtatccgtc tcctaacagt gacgtggcaa
     5521 gcttctagtt aaagagtctt tgcattattt cctatgggaa gaactatgta attaatatat
     5581 tactgttttg tttttgttgg gtgttgggtt ttgtttttgt tttctacaat caaaatacct
     5641 gcaaagcagc attaaggatt tctgcccaca agaacatgta ttattatcta atagaaaaag
     5701 aatctacaaa gatttgggcc atgtagataa gggtaatgaa ataggttatt ctagtcattt
     5761 ctctaaatat gatgtttttt tcaggttgga tgtagattaa agtggaatgg actgattaaa
     5821 ttatttgatt tatataaaaa ta
//
LOCUS       XM_032604704            2577 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSX family member 2 interacting protein
            (SSX2IP), transcript variant X3, mRNA.
ACCESSION   XM_032604704
VERSION     XM_032604704.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2577
                     /gene="SSX2IP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 14
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116739867"
     CDS             242..2086
                     /gene="SSX2IP"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X3"
                     /protein_id="XP_032460595.1"
                     /db_xref="GeneID:116739867"
                     /translation="MGDWMTVTDPGLSSESKYISQYTSETKMSPSSLYSQQVLCSSIP
                     LSKNVHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESKGKETKRGLNIVAVLNC
                     MNELLVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREMIGLQERDR
                     QLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMN
                     KKDKKIAMEVLNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAE
                     LKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDIEEDAGELSRESTWDLSCETV
                     REQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQ
                     CKEMIKTQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFEKER
                     RSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSSDWDNP
                     TVHSRPRQKKPHGAPSGSPVCTSKLTKSLPASPSTSDFCQTRSCVSEYSSISVLNTTP
                     EESKPNQVGRECTNQKWSVASRPDSQEGCCSGCSSTHADAHIEKDDLP"
     misc_feature    428..883
                     /gene="SSX2IP"
                     /note="Afadin- and alpha -actinin-Binding; Region: ADIP;
                     pfam11559"
                     /db_xref="CDD:463295"
     misc_feature    <569..>1309
                     /gene="SSX2IP"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
ORIGIN      
        1 cggcgggggg cgggcgggag ggcgcggagg tgagcaccgg cacctggcgc ggcgccccgc
       61 ttctctgcgg gaggctcggc gcggccgttg gggccgttgg aggaggaagg cgagcggtga
      121 cccccggccg cgcctggagg aggaggtggg aggagatgcc tacatagaag agtgacagca
      181 gctgggctga atgtttcact gctgaactgg ttcctcaggt atcctggctc tggcgattgc
      241 tatgggagat tggatgactg ttacagatcc aggtctgtct tcagaaagca aatatatctc
      301 tcaatatacc tcagaaacaa agatgtctcc atcaagttta tactcacagc aagtgctatg
      361 ctcttcaata cctttatcaa aaaatgtgca cagttttttt agtgccttct gcacagaaga
      421 gaatattgag caaagtattt catatcttga tcaggaattg actactttcg gttttccttc
      481 attatatgaa gaatccaaag gtaaagagac aaagagagga ttaaatatag ttgctgtttt
      541 aaattgtatg aatgagctac ttgtacttca gcggaagaac cttctagctc aggaaaatgt
      601 ggaaacacag aatctgaaac tgggaagcga tatggaccat ttgcagaact gctatgcaaa
      661 acttaaggag cagctggaaa cctccaggag agaaatgatt ggtcttcagg aaagagacag
      721 acagttacaa tgcaagaaca ggaatttgca tcagctactg aaaaatgaga aagatgaggt
      781 gcagaaatta caaaacatta ttgcaagtcg agctactcaa tataatcatg atatgaagag
      841 aaaagagcgt gaatataata aactaaagga acgtctacat caacttgtta tgaacaagaa
      901 ggataaaaaa atagctatgg aagttttaaa ttacgtgggg agagccgatg gaaaaagagg
      961 ctcctggagg acgggtaaaa ctgaagccag gaacgaagat gaaatgtata aaattctctt
     1021 gaatgattat gaatatcgtc agaaacaaat cctaatggaa aatgctgaac ttaagaaggt
     1081 tcttcagcaa atgaaaaagg aaatgatttc tcttctttct ccccaaaagc agaaacctag
     1141 agaaagagca gatgatagta caggaactgt tatctctgat attgaagaag atgctgggga
     1201 actgagtaga gagagtacgt gggacctttc ctgtgaaact gtgagagagc agcttaccaa
     1261 cagcatcaga aaacagtgga gaattttgaa aagtcatgta gaaaaacttg ataaccaagt
     1321 ttcaaaggta cacctagaag gttttaatga tgaagatgta atctcacgtc aagaccatga
     1381 acaagaaact gaaaaacttg agttagaaat tcaacagtgt aaagaaatga ttaaaactca
     1441 gcagcaactt ttacagcagc agcttgctac tgcgtgtgat gatgacacca cttcactgct
     1501 ccgagactgt tacttgttgg aagagaagga acgcctcaaa gaagaatggt ccctatttaa
     1561 ggagcaaaag aagaatttcg agaaagaaag acgaagcttt acagaagcag ctattcgcct
     1621 aggattggag agaaaggcat ttgaagaaga aagagccagt tggttaaagc aacagtttct
     1681 aaatatgact acctttgacc accagaactc agaaaatgtg aaacttttca gtgccttctc
     1741 aggaagttct gattgggaca accctacagt acactcgagg ccacggcaaa agaagcctca
     1801 cggtgcacct agtgggtctc cagtttgcac gtctaaactt actaaatctc ttcctgcttc
     1861 tccttctact tcagactttt gccagacgcg ttcctgtgta tctgaatata gttcaatcag
     1921 tgtactaaat acaacccctg aagaatctaa gccaaatcag gttggaagag aatgtacaaa
     1981 tcagaagtgg agcgtggcat caaggcctga ttcacaggaa ggttgctgta gtggatgctc
     2041 ctcgacccac gcagacgctc acatagagaa ggatgactta ccttagactt gtgaactggg
     2101 attttttttt ttcttcatta acatgttcat caaatttcac atctgagttg aaacagggtg
     2161 tgttataaag tcaatcatct ctaataattt aaaatggtct gtgttgtttg tttggacttc
     2221 cctgttcctc ccccaaagag ctaaaatgtt aaatctattt aaaaggatat aaaagctttg
     2281 gatatgtatt tttagtaaca gaagcacctg gttctgtgaa taaaggaatg tatgaacgtt
     2341 tggatacaaa caaagcacta gaaagagttt cctcttatag gtattaaaaa tagcactttt
     2401 aggaaactga ttattgtaaa tgtttaattt tgtctcatat atagttggca ttggaagttt
     2461 agcctttcct tgaatgtata ctgtagcttt ttaacaaagc aagttatata tttattatgt
     2521 ttagtgtgat ttgaaatacc ctctttcata tgttttaaat aaagtgaaat ttatgta
//
LOCUS       XM_032604713            5833 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSX family member 2 interacting protein
            (SSX2IP), transcript variant X4, mRNA.
ACCESSION   XM_032604713
VERSION     XM_032604713.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5833
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5833
                     /gene="SSX2IP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739867"
     CDS             223..2067
                     /gene="SSX2IP"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X4"
                     /protein_id="XP_032460604.1"
                     /db_xref="GeneID:116739867"
                     /translation="MGDWMTVTDPESKYISQYTSETKMSPSSLYSQQVLCSSIPLSKN
                     VHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESKGKETKRGLNIVAVLNCMNEL
                     LVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREMIGLQERDRQLQC
                     KNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDK
                     KIAMEVLNYVGRADGKRGSWRTGKTEASFFLRNEDEMYKILLNDYEYRQKQILMENAE
                     LKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDIEEDAGELSRESTWDLSCETV
                     REQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQ
                     CKEMIKTQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFEKER
                     RSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSSDWDNP
                     TVHSRPRQKKPHGAPSGSPVCTSKLTKSLPASPSTSDFCQTRSCVSEYSSISVLNTTP
                     EESKPNQVGRECTNQKWSVASRPDSQEGCCSGCSSTHADAHIEKDDLP"
     misc_feature    397..852
                     /gene="SSX2IP"
                     /note="Afadin- and alpha -actinin-Binding; Region: ADIP;
                     pfam11559"
                     /db_xref="CDD:463295"
     misc_feature    <538..>1290
                     /gene="SSX2IP"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
ORIGIN      
        1 gggagctgga ggtggaggcg gggccgccgg cccgggcgct gcgtgccgcg gcgcctgtgc
       61 gggccctcgg ggcggcgcga gcaggtctag gacgctgatc ggtgcgtttc cgccgcaccc
      121 gggggccgtg acggagatgc ctacatagaa gagtgacagc agctgggctg aatgtttcac
      181 tgctgaactg gttcctcagg tatcctggct ctggcgattg ctatgggaga ttggatgact
      241 gttacagatc cagaaagcaa atatatctct caatatacct cagaaacaaa gatgtctcca
      301 tcaagtttat actcacagca agtgctatgc tcttcaatac ctttatcaaa aaatgtgcac
      361 agttttttta gtgccttctg cacagaagag aatattgagc aaagtatttc atatcttgat
      421 caggaattga ctactttcgg ttttccttca ttatatgaag aatccaaagg taaagagaca
      481 aagagaggat taaatatagt tgctgtttta aattgtatga atgagctact tgtacttcag
      541 cggaagaacc ttctagctca ggaaaatgtg gaaacacaga atctgaaact gggaagcgat
      601 atggaccatt tgcagaactg ctatgcaaaa cttaaggagc agctggaaac ctccaggaga
      661 gaaatgattg gtcttcagga aagagacaga cagttacaat gcaagaacag gaatttgcat
      721 cagctactga aaaatgagaa agatgaggtg cagaaattac aaaacattat tgcaagtcga
      781 gctactcaat ataatcatga tatgaagaga aaagagcgtg aatataataa actaaaggaa
      841 cgtctacatc aacttgttat gaacaagaag gataaaaaaa tagctatgga agttttaaat
      901 tacgtgggga gagccgatgg aaaaagaggc tcctggagga cgggtaaaac tgaagccagt
      961 ttctttctca ggaacgaaga tgaaatgtat aaaattctct tgaatgatta tgaatatcgt
     1021 cagaaacaaa tcctaatgga aaatgctgaa cttaagaagg ttcttcagca aatgaaaaag
     1081 gaaatgattt ctcttctttc tccccaaaag cagaaaccta gagaaagagc agatgatagt
     1141 acaggaactg ttatctctga tattgaagaa gatgctgggg aactgagtag agagagtacg
     1201 tgggaccttt cctgtgaaac tgtgagagag cagcttacca acagcatcag aaaacagtgg
     1261 agaattttga aaagtcatgt agaaaaactt gataaccaag tttcaaaggt acacctagaa
     1321 ggttttaatg atgaagatgt aatctcacgt caagaccatg aacaagaaac tgaaaaactt
     1381 gagttagaaa ttcaacagtg taaagaaatg attaaaactc agcagcaact tttacagcag
     1441 cagcttgcta ctgcgtgtga tgatgacacc acttcactgc tccgagactg ttacttgttg
     1501 gaagagaagg aacgcctcaa agaagaatgg tccctattta aggagcaaaa gaagaatttc
     1561 gagaaagaaa gacgaagctt tacagaagca gctattcgcc taggattgga gagaaaggca
     1621 tttgaagaag aaagagccag ttggttaaag caacagtttc taaatatgac tacctttgac
     1681 caccagaact cagaaaatgt gaaacttttc agtgccttct caggaagttc tgattgggac
     1741 aaccctacag tacactcgag gccacggcaa aagaagcctc acggtgcacc tagtgggtct
     1801 ccagtttgca cgtctaaact tactaaatct cttcctgctt ctccttctac ttcagacttt
     1861 tgccagacgc gttcctgtgt atctgaatat agttcaatca gtgtactaaa tacaacccct
     1921 gaagaatcta agccaaatca ggttggaaga gaatgtacaa atcagaagtg gagcgtggca
     1981 tcaaggcctg attcacagga aggttgctgt agtggatgct cctcgaccca cgcagacgct
     2041 cacatagaga aggatgactt accttagact tgtgaactgg gatttttttt tttcttcatt
     2101 aacatgttca tcaaatttca catctgagtt gaaacagggt gtgttataaa gtcaatcatc
     2161 tctaataatt taaaatggtc tgtgttgttt gtttggactt ccctgttcct cccccaaaga
     2221 gctaaaatgt taaatctatt taaaaggata taaaagcttt ggatatgtat ttttagtaac
     2281 agaagcacct ggttctgtga ataaaggaat gtatgaacgt ttggatacaa acaaagcact
     2341 agaaagagtt tcctcttata ggtattaaaa atagcacttt taggaaactg attattgtaa
     2401 atgtttaatt ttgtctcata tatagttggc attggaagtt tagcctttcc ttgaatgtat
     2461 actgtagctt tttaacaaag caagttatat atttattatg tttagtgtga tttgaaatac
     2521 cctctttcat atgttttaaa taaagtgaaa tttatgtatg ttttgtacat agatatacat
     2581 gattatgtta agaggcttta agatttaaag attttacaca tccataatta tagtatttca
     2641 tgccaataaa atttttatta gtgacattct gtttacagat gtattagagc cattgccacc
     2701 ttatgtttaa gaattttttg aacccatctg agcaataaat actgaaaagg tattccatga
     2761 agccaagatc tttagatcat taacattact aatgttacat tttggagatt tctacagcat
     2821 taggtttttt taatatgcag gatattacaa cttttcaaag gattattgat tttagcgtaa
     2881 tagaggtgag tcaagagtac ctttggatga aacaatttaa gaatattggc ttaggatatt
     2941 tggatgatag aagatattaa gatatttaag atgtttggat ggtgatattt tctctaccag
     3001 atgggtaccc ataccgtaac acctatacca gcaaaggctt tgtacagttg ccaataattc
     3061 tttaataatt tttcaatgag atatttactg atagggaaat ctgataacat aaaagcatca
     3121 gattttatag tccagatatg gtactctgga caaacttgtc atttcacttt caggactgat
     3181 tgcatgattc ttcatggttg ttattgttat tattattgat agtaagaata atgtaagtgt
     3241 gggcccaagc actttcctag aattttcatc agaaagcttt aagtacctaa ctctatttgt
     3301 ctctgcatgt agaagcctac atatatccag tccttgctat aggtattgta gtttaggccc
     3361 atctgccttc ccattttcta gcagtttaac cgtttgtatt cactcacctg gttgtggctg
     3421 ttcagtttaa gtttgtcatg ttaaaaagta cttttgtcgg gcttccctgg tggcgcagtg
     3481 gttgagagtc cgcctgccga tgcaggggac acgggttcgt gccccggtct gggaagatcc
     3541 cacatgccgc ggcacggctg ggcccgtgag ccatggccgc tgagcctgcg cgtccggagc
     3601 ctgtgctccg cagcgggaga ggccacaaca gtgagaggcc catgtactgt aaaaaaaaag
     3661 aaagtacttt tgtcatccac tcactcacta tatatataac tttggagttg catagcagca
     3721 gccatttttt cagggttaat agcatattat tgagtatctt gtaagacatt agtgaaagtg
     3781 ctcatgagaa agtagtacca catttatagt ctcaaaaagc tggctcttga gcaaaagcaa
     3841 attagtcacc gcattcagct tggtgcatgc ccctttttta ccatttaaaa atattagaaa
     3901 tgatgcagaa tttcaggagt agtaccatac tccaaaggaa gaaacagctg tgatatcgtt
     3961 cttttgctat tgagcaataa cgtgatcaaa gaaaagcaat cagattttct aaataggcag
     4021 tgatacattt gtcaagaatt ggggggtttt tttcagggct ttccgtgata tacttggcta
     4081 gaaacagtgt tctaattttc agagtaatct cttattttag gaatattgca ttccacaatg
     4141 atgaagttct acaaagcagc atcagttttt tgtttttttc attttaaagt tggttgaatt
     4201 ctcatattgg agagagaaat tcccttgaga cttactttga aatctaaggt gtgaaagaaa
     4261 cagtaaaatg aaagccagga tcattgtgct tttgataaaa gatctgccag tagttgtatg
     4321 ttttacttaa cagcgtagag tttgctttac attccagctc caatgatgat tcctaggcac
     4381 gctaaacttc ctagaatgtt gaaacggttt ccatgctgga taactcctga ctccacacat
     4441 aaaactccta gattttattt gccttccctc tctaggtgtt tgcagtttac tagtaataca
     4501 gccgtgctgc agtcttgcat ttagccaaga tgaggtgaga gagaaccatg ttcgcttttg
     4561 cttgaaagtc ttcctgacca ttttcagtgt cttcttcttt atcaggatgc agatctgaaa
     4621 cattctgtgc cttatttgtt tttatccatt ttgaattttc aaagcataaa agtggcaaag
     4681 aaaatttaag agattttatt tcctactctt aaatttttat atcttcaatt tatgatgaga
     4741 aacttaatag aagaacaatc ctaccagaaa attaagatta aacttaataa atagatactt
     4801 tcttgtagaa gcaatgtatt aaatgtgtag attcacggaa caatccatgg caaattgttt
     4861 tcctcatggt ataattaaaa tactgtcgtt acttagaatt gcatttttcg tacctttgct
     4921 gaccagactt gttcataggc ccgtggtaac acttttttgg gggaaacata ttccatggta
     4981 catggtgaga aggagagcgc cctagaatcc agttttgacc tgccctggtg gagcgtttga
     5041 gaacgcccgg aatgccagga gaggttttgc agtgtgtatg cacagaatgc tgtgagctag
     5101 caaacccctt atgtgattgc cctgttgtaa aagtcttgaa cacctgttgc ctgatgtaaa
     5161 tcatgttctt atttctagat tggatttaaa ttaagtatgg gtcttggaag tctagtaaat
     5221 atacttctcc ctatgtttgt ccttaatttt tttcattctt ttcataagca tataaaagta
     5281 gctgctgtgt gtcagggctt attactacct tctagttact ggggagggaa agacaactaa
     5341 gcacgctccc taccactgag aatctctggg ttgagtggaa gaccagctat ataaacctaa
     5401 attgtcataa acaatgggag atgctgttca gacattcggt ctggtgataa aacttggact
     5461 cgttgttctg ctccaggatc acgtatccgt ctcctaacag tgacgtggca agcttctagt
     5521 taaagagtct ttgcattatt tcctatggga agaactatgt aattaatata ttactgtttt
     5581 gtttttgttg ggtgttgggt tttgtttttg ttttctacaa tcaaaatacc tgcaaagcag
     5641 cattaaggat ttctgcccac aagaacatgt attattatct aatagaaaaa gaatctacaa
     5701 agatttgggc catgtagata agggtaatga aataggttat tctagtcatt tctctaaata
     5761 tgatgttttt ttcaggttgg atgtagatta aagtggaatg gactgattaa attatttgat
     5821 ttatataaaa ata
//
LOCUS       XM_032604722            5830 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSX family member 2 interacting protein
            (SSX2IP), transcript variant X5, mRNA.
ACCESSION   XM_032604722
VERSION     XM_032604722.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5830
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5830
                     /gene="SSX2IP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739867"
     CDS             223..2064
                     /gene="SSX2IP"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X5"
                     /protein_id="XP_032460613.1"
                     /db_xref="GeneID:116739867"
                     /translation="MGDWMTVTDPGLSSESKYISQYTSETKMSPSSLYSQQVLCSSIP
                     LSKNVHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESKGKETKRGLNIVAVLNC
                     MNELLVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREMIGLQERDR
                     QLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMN
                     KKDKKIAMEVLNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAE
                     LKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDIEEDAGELSRESTWDLSCETV
                     REQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQ
                     CKEMIKTQQQLLQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFEKERR
                     SFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSSDWDNPT
                     VHSRPRQKKPHGAPSGSPVCTSKLTKSLPASPSTSDFCQTRSCVSEYSSISVLNTTPE
                     ESKPNQVGRECTNQKWSVASRPDSQEGCCSGCSSTHADAHIEKDDLP"
     misc_feature    409..864
                     /gene="SSX2IP"
                     /note="Afadin- and alpha -actinin-Binding; Region: ADIP;
                     pfam11559"
                     /db_xref="CDD:463295"
     misc_feature    <550..>1290
                     /gene="SSX2IP"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
ORIGIN      
        1 gggagctgga ggtggaggcg gggccgccgg cccgggcgct gcgtgccgcg gcgcctgtgc
       61 gggccctcgg ggcggcgcga gcaggtctag gacgctgatc ggtgcgtttc cgccgcaccc
      121 gggggccgtg acggagatgc ctacatagaa gagtgacagc agctgggctg aatgtttcac
      181 tgctgaactg gttcctcagg tatcctggct ctggcgattg ctatgggaga ttggatgact
      241 gttacagatc caggtctgtc ttcagaaagc aaatatatct ctcaatatac ctcagaaaca
      301 aagatgtctc catcaagttt atactcacag caagtgctat gctcttcaat acctttatca
      361 aaaaatgtgc acagtttttt tagtgccttc tgcacagaag agaatattga gcaaagtatt
      421 tcatatcttg atcaggaatt gactactttc ggttttcctt cattatatga agaatccaaa
      481 ggtaaagaga caaagagagg attaaatata gttgctgttt taaattgtat gaatgagcta
      541 cttgtacttc agcggaagaa ccttctagct caggaaaatg tggaaacaca gaatctgaaa
      601 ctgggaagcg atatggacca tttgcagaac tgctatgcaa aacttaagga gcagctggaa
      661 acctccagga gagaaatgat tggtcttcag gaaagagaca gacagttaca atgcaagaac
      721 aggaatttgc atcagctact gaaaaatgag aaagatgagg tgcagaaatt acaaaacatt
      781 attgcaagtc gagctactca atataatcat gatatgaaga gaaaagagcg tgaatataat
      841 aaactaaagg aacgtctaca tcaacttgtt atgaacaaga aggataaaaa aatagctatg
      901 gaagttttaa attacgtggg gagagccgat ggaaaaagag gctcctggag gacgggtaaa
      961 actgaagcca ggaacgaaga tgaaatgtat aaaattctct tgaatgatta tgaatatcgt
     1021 cagaaacaaa tcctaatgga aaatgctgaa cttaagaagg ttcttcagca aatgaaaaag
     1081 gaaatgattt ctcttctttc tccccaaaag cagaaaccta gagaaagagc agatgatagt
     1141 acaggaactg ttatctctga tattgaagaa gatgctgggg aactgagtag agagagtacg
     1201 tgggaccttt cctgtgaaac tgtgagagag cagcttacca acagcatcag aaaacagtgg
     1261 agaattttga aaagtcatgt agaaaaactt gataaccaag tttcaaaggt acacctagaa
     1321 ggttttaatg atgaagatgt aatctcacgt caagaccatg aacaagaaac tgaaaaactt
     1381 gagttagaaa ttcaacagtg taaagaaatg attaaaactc agcagcaact tttacagcag
     1441 cttgctactg cgtgtgatga tgacaccact tcactgctcc gagactgtta cttgttggaa
     1501 gagaaggaac gcctcaaaga agaatggtcc ctatttaagg agcaaaagaa gaatttcgag
     1561 aaagaaagac gaagctttac agaagcagct attcgcctag gattggagag aaaggcattt
     1621 gaagaagaaa gagccagttg gttaaagcaa cagtttctaa atatgactac ctttgaccac
     1681 cagaactcag aaaatgtgaa acttttcagt gccttctcag gaagttctga ttgggacaac
     1741 cctacagtac actcgaggcc acggcaaaag aagcctcacg gtgcacctag tgggtctcca
     1801 gtttgcacgt ctaaacttac taaatctctt cctgcttctc cttctacttc agacttttgc
     1861 cagacgcgtt cctgtgtatc tgaatatagt tcaatcagtg tactaaatac aacccctgaa
     1921 gaatctaagc caaatcaggt tggaagagaa tgtacaaatc agaagtggag cgtggcatca
     1981 aggcctgatt cacaggaagg ttgctgtagt ggatgctcct cgacccacgc agacgctcac
     2041 atagagaagg atgacttacc ttagacttgt gaactgggat tttttttttt cttcattaac
     2101 atgttcatca aatttcacat ctgagttgaa acagggtgtg ttataaagtc aatcatctct
     2161 aataatttaa aatggtctgt gttgtttgtt tggacttccc tgttcctccc ccaaagagct
     2221 aaaatgttaa atctatttaa aaggatataa aagctttgga tatgtatttt tagtaacaga
     2281 agcacctggt tctgtgaata aaggaatgta tgaacgtttg gatacaaaca aagcactaga
     2341 aagagtttcc tcttataggt attaaaaata gcacttttag gaaactgatt attgtaaatg
     2401 tttaattttg tctcatatat agttggcatt ggaagtttag cctttccttg aatgtatact
     2461 gtagcttttt aacaaagcaa gttatatatt tattatgttt agtgtgattt gaaataccct
     2521 ctttcatatg ttttaaataa agtgaaattt atgtatgttt tgtacataga tatacatgat
     2581 tatgttaaga ggctttaaga tttaaagatt ttacacatcc ataattatag tatttcatgc
     2641 caataaaatt tttattagtg acattctgtt tacagatgta ttagagccat tgccacctta
     2701 tgtttaagaa ttttttgaac ccatctgagc aataaatact gaaaaggtat tccatgaagc
     2761 caagatcttt agatcattaa cattactaat gttacatttt ggagatttct acagcattag
     2821 gtttttttaa tatgcaggat attacaactt ttcaaaggat tattgatttt agcgtaatag
     2881 aggtgagtca agagtacctt tggatgaaac aatttaagaa tattggctta ggatatttgg
     2941 atgatagaag atattaagat atttaagatg tttggatggt gatattttct ctaccagatg
     3001 ggtacccata ccgtaacacc tataccagca aaggctttgt acagttgcca ataattcttt
     3061 aataattttt caatgagata tttactgata gggaaatctg ataacataaa agcatcagat
     3121 tttatagtcc agatatggta ctctggacaa acttgtcatt tcactttcag gactgattgc
     3181 atgattcttc atggttgtta ttgttattat tattgatagt aagaataatg taagtgtggg
     3241 cccaagcact ttcctagaat tttcatcaga aagctttaag tacctaactc tatttgtctc
     3301 tgcatgtaga agcctacata tatccagtcc ttgctatagg tattgtagtt taggcccatc
     3361 tgccttccca ttttctagca gtttaaccgt ttgtattcac tcacctggtt gtggctgttc
     3421 agtttaagtt tgtcatgtta aaaagtactt ttgtcgggct tccctggtgg cgcagtggtt
     3481 gagagtccgc ctgccgatgc aggggacacg ggttcgtgcc ccggtctggg aagatcccac
     3541 atgccgcggc acggctgggc ccgtgagcca tggccgctga gcctgcgcgt ccggagcctg
     3601 tgctccgcag cgggagaggc cacaacagtg agaggcccat gtactgtaaa aaaaaagaaa
     3661 gtacttttgt catccactca ctcactatat atataacttt ggagttgcat agcagcagcc
     3721 attttttcag ggttaatagc atattattga gtatcttgta agacattagt gaaagtgctc
     3781 atgagaaagt agtaccacat ttatagtctc aaaaagctgg ctcttgagca aaagcaaatt
     3841 agtcaccgca ttcagcttgg tgcatgcccc ttttttacca tttaaaaata ttagaaatga
     3901 tgcagaattt caggagtagt accatactcc aaaggaagaa acagctgtga tatcgttctt
     3961 ttgctattga gcaataacgt gatcaaagaa aagcaatcag attttctaaa taggcagtga
     4021 tacatttgtc aagaattggg gggttttttt cagggctttc cgtgatatac ttggctagaa
     4081 acagtgttct aattttcaga gtaatctctt attttaggaa tattgcattc cacaatgatg
     4141 aagttctaca aagcagcatc agttttttgt ttttttcatt ttaaagttgg ttgaattctc
     4201 atattggaga gagaaattcc cttgagactt actttgaaat ctaaggtgtg aaagaaacag
     4261 taaaatgaaa gccaggatca ttgtgctttt gataaaagat ctgccagtag ttgtatgttt
     4321 tacttaacag cgtagagttt gctttacatt ccagctccaa tgatgattcc taggcacgct
     4381 aaacttccta gaatgttgaa acggtttcca tgctggataa ctcctgactc cacacataaa
     4441 actcctagat tttatttgcc ttccctctct aggtgtttgc agtttactag taatacagcc
     4501 gtgctgcagt cttgcattta gccaagatga ggtgagagag aaccatgttc gcttttgctt
     4561 gaaagtcttc ctgaccattt tcagtgtctt cttctttatc aggatgcaga tctgaaacat
     4621 tctgtgcctt atttgttttt atccattttg aattttcaaa gcataaaagt ggcaaagaaa
     4681 atttaagaga ttttatttcc tactcttaaa tttttatatc ttcaatttat gatgagaaac
     4741 ttaatagaag aacaatccta ccagaaaatt aagattaaac ttaataaata gatactttct
     4801 tgtagaagca atgtattaaa tgtgtagatt cacggaacaa tccatggcaa attgttttcc
     4861 tcatggtata attaaaatac tgtcgttact tagaattgca tttttcgtac ctttgctgac
     4921 cagacttgtt cataggcccg tggtaacact tttttggggg aaacatattc catggtacat
     4981 ggtgagaagg agagcgccct agaatccagt tttgacctgc cctggtggag cgtttgagaa
     5041 cgcccggaat gccaggagag gttttgcagt gtgtatgcac agaatgctgt gagctagcaa
     5101 accccttatg tgattgccct gttgtaaaag tcttgaacac ctgttgcctg atgtaaatca
     5161 tgttcttatt tctagattgg atttaaatta agtatgggtc ttggaagtct agtaaatata
     5221 cttctcccta tgtttgtcct taattttttt cattcttttc ataagcatat aaaagtagct
     5281 gctgtgtgtc agggcttatt actaccttct agttactggg gagggaaaga caactaagca
     5341 cgctccctac cactgagaat ctctgggttg agtggaagac cagctatata aacctaaatt
     5401 gtcataaaca atgggagatg ctgttcagac attcggtctg gtgataaaac ttggactcgt
     5461 tgttctgctc caggatcacg tatccgtctc ctaacagtga cgtggcaagc ttctagttaa
     5521 agagtctttg cattatttcc tatgggaaga actatgtaat taatatatta ctgttttgtt
     5581 tttgttgggt gttgggtttt gtttttgttt tctacaatca aaatacctgc aaagcagcat
     5641 taaggatttc tgcccacaag aacatgtatt attatctaat agaaaaagaa tctacaaaga
     5701 tttgggccat gtagataagg gtaatgaaat aggttattct agtcatttct ctaaatatga
     5761 tgtttttttc aggttggatg tagattaaag tggaatggac tgattaaatt atttgattta
     5821 tataaaaata
//
LOCUS       XM_032604732            5821 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSX family member 2 interacting protein
            (SSX2IP), transcript variant X6, mRNA.
ACCESSION   XM_032604732
VERSION     XM_032604732.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5821
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5821
                     /gene="SSX2IP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739867"
     CDS             223..2055
                     /gene="SSX2IP"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X6"
                     /protein_id="XP_032460623.1"
                     /db_xref="GeneID:116739867"
                     /translation="MGDWMTVTDPESKYISQYTSETKMSPSSLYSQQVLCSSIPLSKN
                     VHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESKGKETKRGLNIVAVLNCMNEL
                     LVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREMIGLQERDRQLQC
                     KNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDK
                     KIAMEVLNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKV
                     LQQMKKEMISLLSPQKQKPRERADDSTGTVISDIEEDAGELSRESTWDLSCETVREQL
                     TNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEM
                     IKTQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFEKERRSFT
                     EAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSSDWDNPTVHS
                     RPRQKKPHGAPSGSPVCTSKLTKSLPASPSTSDFCQTRSCVSEYSSISVLNTTPEESK
                     PNQVGRECTNQKWSVASRPDSQEGCCSGCSSTHADAHIEKDDLP"
     misc_feature    397..852
                     /gene="SSX2IP"
                     /note="Afadin- and alpha -actinin-Binding; Region: ADIP;
                     pfam11559"
                     /db_xref="CDD:463295"
     misc_feature    <538..>1278
                     /gene="SSX2IP"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
ORIGIN      
        1 gggagctgga ggtggaggcg gggccgccgg cccgggcgct gcgtgccgcg gcgcctgtgc
       61 gggccctcgg ggcggcgcga gcaggtctag gacgctgatc ggtgcgtttc cgccgcaccc
      121 gggggccgtg acggagatgc ctacatagaa gagtgacagc agctgggctg aatgtttcac
      181 tgctgaactg gttcctcagg tatcctggct ctggcgattg ctatgggaga ttggatgact
      241 gttacagatc cagaaagcaa atatatctct caatatacct cagaaacaaa gatgtctcca
      301 tcaagtttat actcacagca agtgctatgc tcttcaatac ctttatcaaa aaatgtgcac
      361 agttttttta gtgccttctg cacagaagag aatattgagc aaagtatttc atatcttgat
      421 caggaattga ctactttcgg ttttccttca ttatatgaag aatccaaagg taaagagaca
      481 aagagaggat taaatatagt tgctgtttta aattgtatga atgagctact tgtacttcag
      541 cggaagaacc ttctagctca ggaaaatgtg gaaacacaga atctgaaact gggaagcgat
      601 atggaccatt tgcagaactg ctatgcaaaa cttaaggagc agctggaaac ctccaggaga
      661 gaaatgattg gtcttcagga aagagacaga cagttacaat gcaagaacag gaatttgcat
      721 cagctactga aaaatgagaa agatgaggtg cagaaattac aaaacattat tgcaagtcga
      781 gctactcaat ataatcatga tatgaagaga aaagagcgtg aatataataa actaaaggaa
      841 cgtctacatc aacttgttat gaacaagaag gataaaaaaa tagctatgga agttttaaat
      901 tacgtgggga gagccgatgg aaaaagaggc tcctggagga cgggtaaaac tgaagccagg
      961 aacgaagatg aaatgtataa aattctcttg aatgattatg aatatcgtca gaaacaaatc
     1021 ctaatggaaa atgctgaact taagaaggtt cttcagcaaa tgaaaaagga aatgatttct
     1081 cttctttctc cccaaaagca gaaacctaga gaaagagcag atgatagtac aggaactgtt
     1141 atctctgata ttgaagaaga tgctggggaa ctgagtagag agagtacgtg ggacctttcc
     1201 tgtgaaactg tgagagagca gcttaccaac agcatcagaa aacagtggag aattttgaaa
     1261 agtcatgtag aaaaacttga taaccaagtt tcaaaggtac acctagaagg ttttaatgat
     1321 gaagatgtaa tctcacgtca agaccatgaa caagaaactg aaaaacttga gttagaaatt
     1381 caacagtgta aagaaatgat taaaactcag cagcaacttt tacagcagca gcttgctact
     1441 gcgtgtgatg atgacaccac ttcactgctc cgagactgtt acttgttgga agagaaggaa
     1501 cgcctcaaag aagaatggtc cctatttaag gagcaaaaga agaatttcga gaaagaaaga
     1561 cgaagcttta cagaagcagc tattcgccta ggattggaga gaaaggcatt tgaagaagaa
     1621 agagccagtt ggttaaagca acagtttcta aatatgacta cctttgacca ccagaactca
     1681 gaaaatgtga aacttttcag tgccttctca ggaagttctg attgggacaa ccctacagta
     1741 cactcgaggc cacggcaaaa gaagcctcac ggtgcaccta gtgggtctcc agtttgcacg
     1801 tctaaactta ctaaatctct tcctgcttct ccttctactt cagacttttg ccagacgcgt
     1861 tcctgtgtat ctgaatatag ttcaatcagt gtactaaata caacccctga agaatctaag
     1921 ccaaatcagg ttggaagaga atgtacaaat cagaagtgga gcgtggcatc aaggcctgat
     1981 tcacaggaag gttgctgtag tggatgctcc tcgacccacg cagacgctca catagagaag
     2041 gatgacttac cttagacttg tgaactggga tttttttttt tcttcattaa catgttcatc
     2101 aaatttcaca tctgagttga aacagggtgt gttataaagt caatcatctc taataattta
     2161 aaatggtctg tgttgtttgt ttggacttcc ctgttcctcc cccaaagagc taaaatgtta
     2221 aatctattta aaaggatata aaagctttgg atatgtattt ttagtaacag aagcacctgg
     2281 ttctgtgaat aaaggaatgt atgaacgttt ggatacaaac aaagcactag aaagagtttc
     2341 ctcttatagg tattaaaaat agcactttta ggaaactgat tattgtaaat gtttaatttt
     2401 gtctcatata tagttggcat tggaagttta gcctttcctt gaatgtatac tgtagctttt
     2461 taacaaagca agttatatat ttattatgtt tagtgtgatt tgaaataccc tctttcatat
     2521 gttttaaata aagtgaaatt tatgtatgtt ttgtacatag atatacatga ttatgttaag
     2581 aggctttaag atttaaagat tttacacatc cataattata gtatttcatg ccaataaaat
     2641 ttttattagt gacattctgt ttacagatgt attagagcca ttgccacctt atgtttaaga
     2701 attttttgaa cccatctgag caataaatac tgaaaaggta ttccatgaag ccaagatctt
     2761 tagatcatta acattactaa tgttacattt tggagatttc tacagcatta ggttttttta
     2821 atatgcagga tattacaact tttcaaagga ttattgattt tagcgtaata gaggtgagtc
     2881 aagagtacct ttggatgaaa caatttaaga atattggctt aggatatttg gatgatagaa
     2941 gatattaaga tatttaagat gtttggatgg tgatattttc tctaccagat gggtacccat
     3001 accgtaacac ctataccagc aaaggctttg tacagttgcc aataattctt taataatttt
     3061 tcaatgagat atttactgat agggaaatct gataacataa aagcatcaga ttttatagtc
     3121 cagatatggt actctggaca aacttgtcat ttcactttca ggactgattg catgattctt
     3181 catggttgtt attgttatta ttattgatag taagaataat gtaagtgtgg gcccaagcac
     3241 tttcctagaa ttttcatcag aaagctttaa gtacctaact ctatttgtct ctgcatgtag
     3301 aagcctacat atatccagtc cttgctatag gtattgtagt ttaggcccat ctgccttccc
     3361 attttctagc agtttaaccg tttgtattca ctcacctggt tgtggctgtt cagtttaagt
     3421 ttgtcatgtt aaaaagtact tttgtcgggc ttccctggtg gcgcagtggt tgagagtccg
     3481 cctgccgatg caggggacac gggttcgtgc cccggtctgg gaagatccca catgccgcgg
     3541 cacggctggg cccgtgagcc atggccgctg agcctgcgcg tccggagcct gtgctccgca
     3601 gcgggagagg ccacaacagt gagaggccca tgtactgtaa aaaaaaagaa agtacttttg
     3661 tcatccactc actcactata tatataactt tggagttgca tagcagcagc cattttttca
     3721 gggttaatag catattattg agtatcttgt aagacattag tgaaagtgct catgagaaag
     3781 tagtaccaca tttatagtct caaaaagctg gctcttgagc aaaagcaaat tagtcaccgc
     3841 attcagcttg gtgcatgccc cttttttacc atttaaaaat attagaaatg atgcagaatt
     3901 tcaggagtag taccatactc caaaggaaga aacagctgtg atatcgttct tttgctattg
     3961 agcaataacg tgatcaaaga aaagcaatca gattttctaa ataggcagtg atacatttgt
     4021 caagaattgg ggggtttttt tcagggcttt ccgtgatata cttggctaga aacagtgttc
     4081 taattttcag agtaatctct tattttagga atattgcatt ccacaatgat gaagttctac
     4141 aaagcagcat cagttttttg tttttttcat tttaaagttg gttgaattct catattggag
     4201 agagaaattc ccttgagact tactttgaaa tctaaggtgt gaaagaaaca gtaaaatgaa
     4261 agccaggatc attgtgcttt tgataaaaga tctgccagta gttgtatgtt ttacttaaca
     4321 gcgtagagtt tgctttacat tccagctcca atgatgattc ctaggcacgc taaacttcct
     4381 agaatgttga aacggtttcc atgctggata actcctgact ccacacataa aactcctaga
     4441 ttttatttgc cttccctctc taggtgtttg cagtttacta gtaatacagc cgtgctgcag
     4501 tcttgcattt agccaagatg aggtgagaga gaaccatgtt cgcttttgct tgaaagtctt
     4561 cctgaccatt ttcagtgtct tcttctttat caggatgcag atctgaaaca ttctgtgcct
     4621 tatttgtttt tatccatttt gaattttcaa agcataaaag tggcaaagaa aatttaagag
     4681 attttatttc ctactcttaa atttttatat cttcaattta tgatgagaaa cttaatagaa
     4741 gaacaatcct accagaaaat taagattaaa cttaataaat agatactttc ttgtagaagc
     4801 aatgtattaa atgtgtagat tcacggaaca atccatggca aattgttttc ctcatggtat
     4861 aattaaaata ctgtcgttac ttagaattgc atttttcgta cctttgctga ccagacttgt
     4921 tcataggccc gtggtaacac ttttttgggg gaaacatatt ccatggtaca tggtgagaag
     4981 gagagcgccc tagaatccag ttttgacctg ccctggtgga gcgtttgaga acgcccggaa
     5041 tgccaggaga ggttttgcag tgtgtatgca cagaatgctg tgagctagca aaccccttat
     5101 gtgattgccc tgttgtaaaa gtcttgaaca cctgttgcct gatgtaaatc atgttcttat
     5161 ttctagattg gatttaaatt aagtatgggt cttggaagtc tagtaaatat acttctccct
     5221 atgtttgtcc ttaatttttt tcattctttt cataagcata taaaagtagc tgctgtgtgt
     5281 cagggcttat tactaccttc tagttactgg ggagggaaag acaactaagc acgctcccta
     5341 ccactgagaa tctctgggtt gagtggaaga ccagctatat aaacctaaat tgtcataaac
     5401 aatgggagat gctgttcaga cattcggtct ggtgataaaa cttggactcg ttgttctgct
     5461 ccaggatcac gtatccgtct cctaacagtg acgtggcaag cttctagtta aagagtcttt
     5521 gcattatttc ctatgggaag aactatgtaa ttaatatatt actgttttgt ttttgttggg
     5581 tgttgggttt tgtttttgtt ttctacaatc aaaatacctg caaagcagca ttaaggattt
     5641 ctgcccacaa gaacatgtat tattatctaa tagaaaaaga atctacaaag atttgggcca
     5701 tgtagataag ggtaatgaaa taggttattc tagtcatttc tctaaatatg atgttttttt
     5761 caggttggat gtagattaaa gtggaatgga ctgattaaat tatttgattt atataaaaat
     5821 a
//
LOCUS       XM_032604742            6272 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSX family member 2 interacting protein
            (SSX2IP), transcript variant X7, mRNA.
ACCESSION   XM_032604742
VERSION     XM_032604742.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6272
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6272
                     /gene="SSX2IP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739867"
     CDS             968..2506
                     /gene="SSX2IP"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X7"
                     /protein_id="XP_032460633.1"
                     /db_xref="GeneID:116739867"
                     /translation="MNELLVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLE
                     TSRREMIGLQERDRQLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKERE
                     YNKLKERLHQLVMNKKDKKIAMEVLNYVGRADGKRGSWRTGKTEARNEDEMYKILLND
                     YEYRQKQILMENAELKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDIEEDAGE
                     LSRESTWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQD
                     HEQETEKLELEIQQCKEMIKTQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEW
                     SLFKEQKKNFEKERRSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVK
                     LFSAFSGSSDWDNPTVHSRPRQKKPHGAPSGSPVCTSKLTKSLPASPSTSDFCQTRSC
                     VSEYSSISVLNTTPEESKPNQVGRECTNQKWSVASRPDSQEGCCSGCSSTHADAHIEK
                     DDLP"
     misc_feature    <968..1303
                     /gene="SSX2IP"
                     /note="Afadin- and alpha -actinin-Binding; Region: ADIP;
                     pfam11559"
                     /db_xref="CDD:463295"
     misc_feature    <1037..1852
                     /gene="SSX2IP"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 cggcccgggc gctgcgtgcc gcggcgcctg tgcgggccct cggggcggcg cgagcaggtc
       61 taggacgctg atcggtgcgt ttccgccgca cccgggggcc gtgacggaga tgcctacata
      121 gaagagtgac agcagctggg ctgaatgttt cactgctgaa ctggttcctc aggtatcctg
      181 gctctggcga ttgctatggg agattggatg actgttacag atccaggtct gtcttcagaa
      241 agcaaatata tctctcaata tacctcagaa acaaagatgt ctccatcaag tttatactca
      301 cagcaagtgc tatgctcttc aataccttta tcaaaaaatg tgcacagttt ttttagtgcc
      361 ttctgcacag aagagaatat tgagcaaagt atttcatatc ttgatcaggt aacatgtttt
      421 gtttttgtaa gaagcaataa ataacataaa tcatgttata taatagaaca tatcaaaggt
      481 atgagaaaaa cttgtcaagc acaagtacgt tacatattgg cccgggactt atattagatt
      541 tgcagagaac cttggtgacc atctagtcta gatacacgag gtaaacgttt ttgtctggat
      601 caggttggat cccccatcac cccaggggct cctccacggg gagtcttacc cttattttac
      661 tgatgcagaa acctaagtgc cttctccaga tcacaggtga ttgtagagca gaggctaaaa
      721 gagcgcagtt ctcttaattc tttgtccttt ggcataggtg ctactttctt aactatctca
      781 ggttagtttc ctttctcaga aaagatttct gtcttttgtt tatttattaa gttgtccggt
      841 aaccaacttt taggaaaaca ttttctccta ctaggaattg actactttcg gttttccttc
      901 attatatgaa gaatccaaag gtaaagagac aaagagagga ttaaatatag ttgctgtttt
      961 aaattgtatg aatgagctac ttgtacttca gcggaagaac cttctagctc aggaaaatgt
     1021 ggaaacacag aatctgaaac tgggaagcga tatggaccat ttgcagaact gctatgcaaa
     1081 acttaaggag cagctggaaa cctccaggag agaaatgatt ggtcttcagg aaagagacag
     1141 acagttacaa tgcaagaaca ggaatttgca tcagctactg aaaaatgaga aagatgaggt
     1201 gcagaaatta caaaacatta ttgcaagtcg agctactcaa tataatcatg atatgaagag
     1261 aaaagagcgt gaatataata aactaaagga acgtctacat caacttgtta tgaacaagaa
     1321 ggataaaaaa atagctatgg aagttttaaa ttacgtgggg agagccgatg gaaaaagagg
     1381 ctcctggagg acgggtaaaa ctgaagccag gaacgaagat gaaatgtata aaattctctt
     1441 gaatgattat gaatatcgtc agaaacaaat cctaatggaa aatgctgaac ttaagaaggt
     1501 tcttcagcaa atgaaaaagg aaatgatttc tcttctttct ccccaaaagc agaaacctag
     1561 agaaagagca gatgatagta caggaactgt tatctctgat attgaagaag atgctgggga
     1621 actgagtaga gagagtacgt gggacctttc ctgtgaaact gtgagagagc agcttaccaa
     1681 cagcatcaga aaacagtgga gaattttgaa aagtcatgta gaaaaacttg ataaccaagt
     1741 ttcaaaggta cacctagaag gttttaatga tgaagatgta atctcacgtc aagaccatga
     1801 acaagaaact gaaaaacttg agttagaaat tcaacagtgt aaagaaatga ttaaaactca
     1861 gcagcaactt ttacagcagc agcttgctac tgcgtgtgat gatgacacca cttcactgct
     1921 ccgagactgt tacttgttgg aagagaagga acgcctcaaa gaagaatggt ccctatttaa
     1981 ggagcaaaag aagaatttcg agaaagaaag acgaagcttt acagaagcag ctattcgcct
     2041 aggattggag agaaaggcat ttgaagaaga aagagccagt tggttaaagc aacagtttct
     2101 aaatatgact acctttgacc accagaactc agaaaatgtg aaacttttca gtgccttctc
     2161 aggaagttct gattgggaca accctacagt acactcgagg ccacggcaaa agaagcctca
     2221 cggtgcacct agtgggtctc cagtttgcac gtctaaactt actaaatctc ttcctgcttc
     2281 tccttctact tcagactttt gccagacgcg ttcctgtgta tctgaatata gttcaatcag
     2341 tgtactaaat acaacccctg aagaatctaa gccaaatcag gttggaagag aatgtacaaa
     2401 tcagaagtgg agcgtggcat caaggcctga ttcacaggaa ggttgctgta gtggatgctc
     2461 ctcgacccac gcagacgctc acatagagaa ggatgactta ccttagactt gtgaactggg
     2521 attttttttt ttcttcatta acatgttcat caaatttcac atctgagttg aaacagggtg
     2581 tgttataaag tcaatcatct ctaataattt aaaatggtct gtgttgtttg tttggacttc
     2641 cctgttcctc ccccaaagag ctaaaatgtt aaatctattt aaaaggatat aaaagctttg
     2701 gatatgtatt tttagtaaca gaagcacctg gttctgtgaa taaaggaatg tatgaacgtt
     2761 tggatacaaa caaagcacta gaaagagttt cctcttatag gtattaaaaa tagcactttt
     2821 aggaaactga ttattgtaaa tgtttaattt tgtctcatat atagttggca ttggaagttt
     2881 agcctttcct tgaatgtata ctgtagcttt ttaacaaagc aagttatata tttattatgt
     2941 ttagtgtgat ttgaaatacc ctctttcata tgttttaaat aaagtgaaat ttatgtatgt
     3001 tttgtacata gatatacatg attatgttaa gaggctttaa gatttaaaga ttttacacat
     3061 ccataattat agtatttcat gccaataaaa tttttattag tgacattctg tttacagatg
     3121 tattagagcc attgccacct tatgtttaag aattttttga acccatctga gcaataaata
     3181 ctgaaaaggt attccatgaa gccaagatct ttagatcatt aacattacta atgttacatt
     3241 ttggagattt ctacagcatt aggttttttt aatatgcagg atattacaac ttttcaaagg
     3301 attattgatt ttagcgtaat agaggtgagt caagagtacc tttggatgaa acaatttaag
     3361 aatattggct taggatattt ggatgataga agatattaag atatttaaga tgtttggatg
     3421 gtgatatttt ctctaccaga tgggtaccca taccgtaaca cctataccag caaaggcttt
     3481 gtacagttgc caataattct ttaataattt ttcaatgaga tatttactga tagggaaatc
     3541 tgataacata aaagcatcag attttatagt ccagatatgg tactctggac aaacttgtca
     3601 tttcactttc aggactgatt gcatgattct tcatggttgt tattgttatt attattgata
     3661 gtaagaataa tgtaagtgtg ggcccaagca ctttcctaga attttcatca gaaagcttta
     3721 agtacctaac tctatttgtc tctgcatgta gaagcctaca tatatccagt ccttgctata
     3781 ggtattgtag tttaggccca tctgccttcc cattttctag cagtttaacc gtttgtattc
     3841 actcacctgg ttgtggctgt tcagtttaag tttgtcatgt taaaaagtac ttttgtcggg
     3901 cttccctggt ggcgcagtgg ttgagagtcc gcctgccgat gcaggggaca cgggttcgtg
     3961 ccccggtctg ggaagatccc acatgccgcg gcacggctgg gcccgtgagc catggccgct
     4021 gagcctgcgc gtccggagcc tgtgctccgc agcgggagag gccacaacag tgagaggccc
     4081 atgtactgta aaaaaaaaga aagtactttt gtcatccact cactcactat atatataact
     4141 ttggagttgc atagcagcag ccattttttc agggttaata gcatattatt gagtatcttg
     4201 taagacatta gtgaaagtgc tcatgagaaa gtagtaccac atttatagtc tcaaaaagct
     4261 ggctcttgag caaaagcaaa ttagtcaccg cattcagctt ggtgcatgcc ccttttttac
     4321 catttaaaaa tattagaaat gatgcagaat ttcaggagta gtaccatact ccaaaggaag
     4381 aaacagctgt gatatcgttc ttttgctatt gagcaataac gtgatcaaag aaaagcaatc
     4441 agattttcta aataggcagt gatacatttg tcaagaattg gggggttttt ttcagggctt
     4501 tccgtgatat acttggctag aaacagtgtt ctaattttca gagtaatctc ttattttagg
     4561 aatattgcat tccacaatga tgaagttcta caaagcagca tcagtttttt gtttttttca
     4621 ttttaaagtt ggttgaattc tcatattgga gagagaaatt cccttgagac ttactttgaa
     4681 atctaaggtg tgaaagaaac agtaaaatga aagccaggat cattgtgctt ttgataaaag
     4741 atctgccagt agttgtatgt tttacttaac agcgtagagt ttgctttaca ttccagctcc
     4801 aatgatgatt cctaggcacg ctaaacttcc tagaatgttg aaacggtttc catgctggat
     4861 aactcctgac tccacacata aaactcctag attttatttg ccttccctct ctaggtgttt
     4921 gcagtttact agtaatacag ccgtgctgca gtcttgcatt tagccaagat gaggtgagag
     4981 agaaccatgt tcgcttttgc ttgaaagtct tcctgaccat tttcagtgtc ttcttcttta
     5041 tcaggatgca gatctgaaac attctgtgcc ttatttgttt ttatccattt tgaattttca
     5101 aagcataaaa gtggcaaaga aaatttaaga gattttattt cctactctta aatttttata
     5161 tcttcaattt atgatgagaa acttaataga agaacaatcc taccagaaaa ttaagattaa
     5221 acttaataaa tagatacttt cttgtagaag caatgtatta aatgtgtaga ttcacggaac
     5281 aatccatggc aaattgtttt cctcatggta taattaaaat actgtcgtta cttagaattg
     5341 catttttcgt acctttgctg accagacttg ttcataggcc cgtggtaaca cttttttggg
     5401 ggaaacatat tccatggtac atggtgagaa ggagagcgcc ctagaatcca gttttgacct
     5461 gccctggtgg agcgtttgag aacgcccgga atgccaggag aggttttgca gtgtgtatgc
     5521 acagaatgct gtgagctagc aaacccctta tgtgattgcc ctgttgtaaa agtcttgaac
     5581 acctgttgcc tgatgtaaat catgttctta tttctagatt ggatttaaat taagtatggg
     5641 tcttggaagt ctagtaaata tacttctccc tatgtttgtc cttaattttt ttcattcttt
     5701 tcataagcat ataaaagtag ctgctgtgtg tcagggctta ttactacctt ctagttactg
     5761 gggagggaaa gacaactaag cacgctccct accactgaga atctctgggt tgagtggaag
     5821 accagctata taaacctaaa ttgtcataaa caatgggaga tgctgttcag acattcggtc
     5881 tggtgataaa acttggactc gttgttctgc tccaggatca cgtatccgtc tcctaacagt
     5941 gacgtggcaa gcttctagtt aaagagtctt tgcattattt cctatgggaa gaactatgta
     6001 attaatatat tactgttttg tttttgttgg gtgttgggtt ttgtttttgt tttctacaat
     6061 caaaatacct gcaaagcagc attaaggatt tctgcccaca agaacatgta ttattatcta
     6121 atagaaaaag aatctacaaa gatttgggcc atgtagataa gggtaatgaa ataggttatt
     6181 ctagtcattt ctctaaatat gatgtttttt tcaggttgga tgtagattaa agtggaatgg
     6241 actgattaaa ttatttgatt tatataaaaa ta
//
LOCUS       XM_032604755            1849 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin conjugating enzyme E2 Q1
            (UBE2Q1), mRNA.
ACCESSION   XM_032604755
VERSION     XM_032604755.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1849
                     /gene="UBE2Q1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739885"
     CDS             123..1391
                     /gene="UBE2Q1"
                     /codon_start=1
                     /product="ubiquitin-conjugating enzyme E2 Q1"
                     /protein_id="XP_032460646.1"
                     /db_xref="GeneID:116739885"
                     /translation="MQQPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRE
                     LKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVPGDPV
                     RIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLY
                     NLPQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSE
                     DDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAV
                     ELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRV
                     VSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQ
                     YSLTRAQQSYKSLVQIHEKNGWYTPPKEDG"
     misc_feature    882..1349
                     /gene="UBE2Q1"
                     /note="Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
                     domain of ubiquitin-conjugating enzyme E2 Q1, Q2, and
                     related proteins; Region: UBCc_UBE2Q; cd23802"
                     /db_xref="CDD:467422"
ORIGIN      
        1 tcttggcgaa ggggggatca ggaagtgcgg accgcggcgg cggcggcggc ggcggcggcg
       61 gagcccggag cggaggccgg aggctcccgg cccgccggcc ccggagcgga gcggagcgga
      121 ggatgcagca gccgcagccg caggggcagc agcagccggg gccggggcag cagctggggg
      181 gccagggggc ggcgccgggg gccgggggcg gcccgggagg gggcccgggg ccggggccct
      241 gcctgaggcg ggagctgaag ctgctcgagt ccatcttcca ccgcggccac gagcgcttcc
      301 gcattgccag cgcctgcctg gacgagctga gctgcgagtt cctgctggct ggggccggag
      361 gggccggggc gggggccgcg cccggaccgc atctcccccc acgggggtcg gtgcctgggg
      421 atcccgtccg catccactgc aacatcacgg agtcataccc tgctgtgccc cccatctggt
      481 cagtggagtc cgatgaccct aacttggctg ctgtcttgga gaggctggtg gacataaaga
      541 aagggaatac tttgctattg cagcatctga agaggatcat ctccgacctg tgtaaactct
      601 ataacctccc tcagcatcca gatgtggaga tgctggatca gcccttgcca gcagagcagt
      661 gtacacagga agatgtatct tcggaagatg aagatgaaga gatgcctgag gacacagaag
      721 acctagatca ctatgaaatg aaagaagaag agccagctga gggtaagaaa tctgaagatg
      781 acggcatcgg aaaagaaaac ttggccatac tagagaaaat taaaaagaac cagaggcaag
      841 attacttaaa tggtgcggtg tctggctcgg tgcaggctac tgaccggctg atgaaggagc
      901 tcagggatat ataccgatca cagagtttca aaggcggaaa ctatgcagtc gaactcgtga
      961 atgacagtct gtatgattgg aatgtcaaac tcctcaaagt tgaccaggac agcgctttgc
     1021 acaacgatct ccagatcctc aaagagaaag aaggggctga cttcatccta ctaaactttt
     1081 cttttaaaga taactttccc tttgacccgc cgtttgtcag ggttgtgtct ccagtcctgt
     1141 ccggagggta tgttctgggc ggaggtgcca tctgcatgga acttctcacc aagcagggct
     1201 ggagcagtgc ctattcaata gagtcagtga tcatgcagat cagtgccaca ctggtgaagg
     1261 ggaaagcacg agtgcagttt ggagccaaca aatctcaata cagcctgaca agagcacagc
     1321 agtcctacaa gtccttggtg cagatccacg aaaaaaacgg ctggtacaca cccccgaagg
     1381 aagatggcta acccgggagt gccatcccct tcttccttcc ccaggcacca ctggaccaat
     1441 tacctttgaa tgctgtattt ggatctcacg ctgcctctgt ggttcccccc ctcatttttc
     1501 ctggacgtga tagctctgcc tattgcagga caatgatggc tattctaaac gctaaggaaa
     1561 aaaaaaaaac acagaactgt ttcaagtact caagactgac ttacagacca accaaccacc
     1621 tggctggaac ccttgctagc aggcattctt ataaaagaaa ctttcgagcc tccttatatt
     1681 gctggaaact cagctgtgct ccagactaga gcctccttac ctatgctatg gatttttaat
     1741 ttattttctc ttatttcatg tacactgctt tttttggtta cagtgtatga tggatgtgta
     1801 tgaaaaaaaa tgtatctttg ggaaaacaat tacagtttgt taatttgaa
//
LOCUS       XM_032604768            1232 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus thioesterase superfamily member 4
            (THEM4), transcript variant X1, mRNA.
ACCESSION   XM_032604768
VERSION     XM_032604768.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1232
                     /gene="THEM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739888"
     CDS             152..826
                     /gene="THEM4"
                     /codon_start=1
                     /product="acyl-coenzyme A thioesterase THEM4 isoform X1"
                     /protein_id="XP_032460659.1"
                     /db_xref="GeneID:116739888"
                     /translation="MLRSCTAALRTLRALRGRREGASPAARDPVLARRWFSTEKVIPK
                     DHALPNPSWSKDLRLLFDQFMKKCEDGSWERLPSYKNSKLVKEQLSQAQLFTRGYEDG
                     LGFEYVIFYNDDEKRTVCLFQGGPYLQGVPGFLHGGAIATMIDAAVGMCAAIPGGIVM
                     TANLNINFKRPIPLCSVVVINSQLDKIEGRKLFLSCTVRSADEKILYSEATGLFIKLD
                     PEKSLI"
     misc_feature    458..796
                     /gene="THEM4"
                     /note="PaaI_thioesterase is a tetrameric acyl-CoA
                     thioesterase with a hot dog fold and one of several
                     proteins responsible for phenylacetic acid (PA)
                     degradation in bacteria. Although orthologs of PaaI exist
                     in archaea and eukaryotes, their function has not...;
                     Region: PaaI_thioesterase; cd03443"
                     /db_xref="CDD:239527"
     misc_feature    order(554..556,632..634,653..664)
                     /gene="THEM4"
                     /note="CoenzymeA binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239527"
     misc_feature    order(557..559,563..565,572..574,635..649,653..655)
                     /gene="THEM4"
                     /note="subunit interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:239527"
     misc_feature    order(560..562,584..589,596..601,632..634)
                     /gene="THEM4"
                     /note="PHB binding site [active]"
                     /db_xref="CDD:239527"
ORIGIN      
        1 ccccgctgcc ttcacgcccc gccctccgct cccctaagtt aaagaggaag agcgggccgt
       61 tgggaggctg gttgggtgag ttggcctctg ccgcgcccgg gagccagccg ccgcacttcc
      121 ggcggccgga gccccgcgca cgctcggagc catgttgagg agctgcaccg cggcactgcg
      181 cacgctccgg gccctgcgcg gcaggcggga aggcgcgtcc cccgctgcga gggacccggt
      241 actcgcgcgg aggtggtttt ctacggagaa agtcattcct aaggaccatg ctctccccaa
      301 ccccagctgg agcaaggact taagactcct ctttgaccag ttcatgaaga aatgtgaaga
      361 cggctcctgg gaacgtttac cttcatataa aaactcaaag cttgtgaaag aacaactgtc
      421 acaggcccag ctcttcacca ggggctatga ggatggcctg ggctttgaat atgtgatatt
      481 ctataatgat gatgagaaaa ggacagtttg cttgtttcaa ggaggtcctt atctacaagg
      541 ggtacctgga ttccttcatg gaggtgccat tgcaacaatg attgatgctg ctgttggtat
      601 gtgtgcagct atacctgggg gaattgtcat gactgccaat ctcaacatca attttaaaag
      661 acctatcccc ctctgttctg ttgttgtgat aaatagccaa cttgataaaa ttgaggggag
      721 gaaattgttt ctttcttgta ctgttcgaag tgctgatgag aagatcctgt actcagaggc
      781 aacaggctta tttataaagc tggatcctga aaaaagtttg atataaaaga gcttctggtg
      841 aattccacac caatctgcgt aaggctgtcc ctcctccaga agaagcagtt gtcttcagtc
      901 ctattctact cacccactgt tgaatccccc atcaggtgaa gcctgctaac acagaccttc
      961 ctaaacaagt cttttgaata caattccagg agctccattt ccaccttcca aactttttta
     1021 cagagacact ccctgtgaga gtatcagcag ttctttctgt ctccttagga taagtgtctg
     1081 gttctcctaa aatttgaatg ggctccttaa gtttgcatag gtgtgatgtc tgatccattg
     1141 cattctggag aaaaaaatca tattgaaact tttaccacaa acctggaaat gccagaaaac
     1201 caaaggaagg aataaatatg tcggtgcacg aa
//
LOCUS       XM_032604775             917 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus thioesterase superfamily member 4
            (THEM4), transcript variant X2, mRNA.
ACCESSION   XM_032604775
VERSION     XM_032604775.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..917
                     /gene="THEM4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739888"
     CDS             152..721
                     /gene="THEM4"
                     /codon_start=1
                     /product="acyl-coenzyme A thioesterase THEM4 isoform X2"
                     /protein_id="XP_032460666.1"
                     /db_xref="GeneID:116739888"
                     /translation="MLRSCTAALRTLRALRGRREGASPAARDPVLARRWFSTEKVIPK
                     DHALPNPSWSKDLRLLFDQFMKKCEDGSWERLPSYKNSKLVKEQLSQAQLFTRGYEDG
                     LGFEYVIFYNDDEKRTVCLFQGGPYLQGVPGFLHGGAIATMIDAAVGMCAAIPGGIVM
                     TANLNINFKRISAPFRWDSLCHLRAGIIW"
     misc_feature    458..>661
                     /gene="THEM4"
                     /note="PaaI_thioesterase is a tetrameric acyl-CoA
                     thioesterase with a hot dog fold and one of several
                     proteins responsible for phenylacetic acid (PA)
                     degradation in bacteria. Although orthologs of PaaI exist
                     in archaea and eukaryotes, their function has not...;
                     Region: PaaI_thioesterase; cd03443"
                     /db_xref="CDD:239527"
     misc_feature    order(554..556,632..634,653..661)
                     /gene="THEM4"
                     /note="CoenzymeA binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239527"
     misc_feature    order(557..559,563..565,572..574,635..649,653..655)
                     /gene="THEM4"
                     /note="subunit interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:239527"
     misc_feature    order(560..562,584..589,596..601,632..634)
                     /gene="THEM4"
                     /note="PHB binding site [active]"
                     /db_xref="CDD:239527"
ORIGIN      
        1 ccccgctgcc ttcacgcccc gccctccgct cccctaagtt aaagaggaag agcgggccgt
       61 tgggaggctg gttgggtgag ttggcctctg ccgcgcccgg gagccagccg ccgcacttcc
      121 ggcggccgga gccccgcgca cgctcggagc catgttgagg agctgcaccg cggcactgcg
      181 cacgctccgg gccctgcgcg gcaggcggga aggcgcgtcc cccgctgcga gggacccggt
      241 actcgcgcgg aggtggtttt ctacggagaa agtcattcct aaggaccatg ctctccccaa
      301 ccccagctgg agcaaggact taagactcct ctttgaccag ttcatgaaga aatgtgaaga
      361 cggctcctgg gaacgtttac cttcatataa aaactcaaag cttgtgaaag aacaactgtc
      421 acaggcccag ctcttcacca ggggctatga ggatggcctg ggctttgaat atgtgatatt
      481 ctataatgat gatgagaaaa ggacagtttg cttgtttcaa ggaggtcctt atctacaagg
      541 ggtacctgga ttccttcatg gaggtgccat tgcaacaatg attgatgctg ctgttggtat
      601 gtgtgcagct atacctgggg gaattgtcat gactgccaat ctcaacatca attttaaaag
      661 gatttcggct cccttcagat gggacagcct ctgccacctc agagctggaa tcatctggtg
      721 atttctttga acctaaccca caacagcagt ctctggactg ggtgcccagg agccacctga
      781 gagcaatggt gcttgggagg aagggggtgt gagcaactgg tggtgtcaga attttatcta
      841 aaacagcacc cactgatacc aggtatcata aatttccacc cctgtcatgc acttgatcat
      901 ctctcaatgc tacataa
//
LOCUS       XR_004345739             831 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739902
            (LOC116739902), ncRNA.
ACCESSION   XR_004345739
VERSION     XR_004345739.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..831
                     /gene="LOC116739902"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116739902"
     ncRNA           1..831
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739902"
                     /product="uncharacterized LOC116739902"
                     /db_xref="GeneID:116739902"
ORIGIN      
        1 ccctcagccc ctcagcccag gcggccacgc gctactaatg aggattcgct ggcttttttc
       61 ccgactcgcg ccggccgacc gaattctgtg ctctctgttc cctagtagtt ctacctcccg
      121 cagaagactt aagccgtcag gtcggtagga gcgcacacag cggattgtag aaatagaata
      181 ttttcttgga ggccgtggac aaatccatgg ttgggattga tctgtagaga gacttctggg
      241 tgcagaggac ataaagctta gaaagctacg ttctccacct cttgcgccgc ccctccacac
      301 acacccttaa ggctccgggc agagctaaaa gtcctcaagt ctggcttttt caactagaaa
      361 ttgtagcaac acctgacgga tgtattcatc tcttagcttt ggagacatat ctgagctcca
      421 agtcccactc caccacctaa caccttgtac gctctttaat tgtacctggg cccttgtttc
      481 ttcattgttg tattaaaaag aatatatcaa gttttacttg ttgccaggac cttctctttc
      541 agtaggagtc accgaagtta gaagttactt gaagttactt tgtattcacc taagaaagaa
      601 agtaccccca ggccagtggt gtgttgaagg tgacttgaac agtctcgtta aaattgactc
      661 ttcctcagga aggacttatt cttgacttct tatccccggg acaatgcacc aaagtgagat
      721 gctggtggtc tggagccgaa tccacagtat ctctgaggta tgcctgttct gagacttata
      781 tatactttag gtaatcctac ataaaaatgt tgatagatat tgagaagcaa c
//
LOCUS       XM_032604795             996 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S-adenosylmethionine decarboxylase
            proenzyme-like (LOC116739905), mRNA.
ACCESSION   XM_032604795
VERSION     XM_032604795.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-123               VOSU01000011.1     174258750-174258872 c
            124-762             VOSU01000011.1     174258051-174258689 c
            763-763             "N"                1-1
            764-996             VOSU01000011.1     174257818-174258050 c
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..996
                     /gene="LOC116739905"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 15 Proteins"
                     /db_xref="GeneID:116739905"
     CDS             1..996
                     /gene="LOC116739905"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: S-adenosylmethionine
                     decarboxylase proenzyme-like"
                     /protein_id="XP_032460686.1"
                     /db_xref="GeneID:116739905"
                     /translation="MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSKWDILL
                     KDVQCSIIRVTKADKQEACVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYS
                     GFDSTQSFFYSPKNFMEPPHQGYPHRNFQEEIEFLNAIFPNGAAYTMGRMNSDCWYLY
                     TLDSPESRVINQPDQTLEILMNELDPAVMDRFYRKDGVTAKDVIRESGIHDLIPVSVI
                     DATLFNPCGYSMNGTKSDGTYWTIHITPEPEFSYVSXETNLSQTSYDDLIRKVVEVFK
                     PGICDHSVNQSSKCLTVLPSPQKIEGFKPLDCQRAMFNDYSFVFTSFAKKQQQQS"
     misc_feature    10..969
                     /gene="LOC116739905"
                     /note="Adenosylmethionine decarboxylase; Region:
                     SAM_decarbox; pfam01536"
                     /db_xref="CDD:460243"
ORIGIN      
        1 atggaagctg cacatttttt tgaagggacc gagaaactgc tggaggtttg gttctccagg
       61 cagcaacctg acgcaaacca aggatctggg gatcttcgca ccatcccaag atccaagtgg
      121 gacatacttt tgaaggatgt gcaatgttca atcatacgtg tgacaaaagc tgacaagcag
      181 gaagcttgtg tactcagtga gagtagcatg tttgtctcca agagacgttt cattttgaaa
      241 acatgtggta ccaccctctt gctgaaagca ctggttcccc tgttgaaact tgctagggat
      301 tacagtgggt ttgactcaac tcaaagcttc ttttattctc ctaagaattt catggagcca
      361 cctcaccaag ggtacccaca ccggaatttc caggaagaaa tagagtttct taatgcaatt
      421 ttcccaaatg gagcagcata tactatggga cgcatgaatt ctgattgttg gtacttatat
      481 actttggatt ccccagagag tcgggtaatc aatcagccag atcaaaccct ggaaattctg
      541 atgaatgagc ttgacccagc ggttatggac cggttctaca ggaaagatgg tgttactgca
      601 aaggatgtca ttcgtgagag tggaattcat gacctgatac cagtttctgt cattgatgcc
      661 acactgttca atccttgtgg gtattcaatg aatggaacga aatcggatgg aacttattgg
      721 actattcaca tcactccaga accagaattt tcttatgtta gcnttgaaac aaacttaagt
      781 cagacctcct atgatgacct gatcaggaaa gttgtggaag tcttcaagcc aggaatttgt
      841 gaccactctg taaatcagag ttctaaatgt ctcacagtac ttccttcgcc ccagaagatt
      901 gaaggtttta aacctcttga ttgccagaga gctatgttca atgattacag ttttgttttc
      961 accagttttg ctaagaagca gcaacagcag agttga
//
LOCUS       XM_032604808            1553 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgi phosphoprotein 3 like (GOLPH3L),
            transcript variant X1, mRNA.
ACCESSION   XM_032604808
VERSION     XM_032604808.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1553
                     /gene="GOLPH3L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 13
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739912"
     CDS             185..1042
                     /gene="GOLPH3L"
                     /codon_start=1
                     /product="Golgi phosphoprotein 3-like isoform X1"
                     /protein_id="XP_032460699.1"
                     /db_xref="GeneID:116739912"
                     /translation="MTTLTHRARRTEGGKNSEKKVESEEDTNQDRSQDNEDTEDSKDI
                     RLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGGILIELAMRGRIYLEPPTMRKKRLL
                     DRKVLLKSDSPTGDVLLDETLKHIKATEPTETVQTWIELLTGETWNPFKLQYQLRNVR
                     ERIAKNLVEKGILTTEKQNFLLFDMTTHPVTNTTEKQRLVKKLQDSVLERWVNDPQRM
                     DKRTLALLVLAHSSDVLENVFSSLTDDKYDVAMNRAKDLVELDPEVEGTKHSATEMIW
                     AVLAAFNKS"
     misc_feature    326..961
                     /gene="GOLPH3L"
                     /note="Golgi phosphoprotein 3 (GPP34); Region: GPP34;
                     pfam05719"
                     /db_xref="CDD:428605"
ORIGIN      
        1 gtgttattcc ttctgtgcat cgaaggatca ggaagtttgt tctctctgcg tggctgagaa
       61 gtttttcacc tactcggacg ggggtggggg gtgggggtgg ggacaggtgt ccccctgaaa
      121 tagagcgcaa gctgcagcct gagtttggcc gtaacccagg aaataacgtc agagacaggt
      181 aagaatgacc actttaactc accgggcccg tcgtacagaa ggagggaaga actctgaaaa
      241 gaaggtggaa agtgaggaag acactaatca agacagaagt caagacaatg aggacactga
      301 agactctaag gatatccgcc tcacgcttat ggaagaagta ttgctcctgg gactaaaaga
      361 taaagagggt tacacatctt tctggaatga ctgcatatca tctggcctgc gaggcggcat
      421 cctgatagag ctggccatgc gaggtcgaat ctatctagaa ccccccacca tgcgtaagaa
      481 gcgactacta gacagaaagg tactactaaa gtcagacagc ccaacgggtg atgttttact
      541 ggatgaaact ctcaaacaca tcaaagcaac tgaacccaca gaaactgtcc aaacatggat
      601 agagctactc actggtgaga cctggaaccc tttcaaatta cagtaccagc tgagaaatgt
      661 aagagagaga attgcaaaga acctagtaga gaagggtatt ctaaccactg agaagcagaa
      721 tttccttcta tttgacatga ctactcaccc agtgaccaat acaacagaga agcagcgact
      781 agtgaaaaag cttcaagaca gtgtcctaga gcggtgggta aatgaccctc agcgtatgga
      841 caagcgaaca ctagcactac tggtgctagc ccactcctct gacgtgctag agaatgtctt
      901 ctcctctctg acagatgaca agtatgatgt ggcaatgaat cgggccaagg acttagtgga
      961 actggaccct gaggtagagg ggacaaagca cagtgccaca gagatgatct gggctgtgct
     1021 ggcagccttc aataaatcct aaagtcagca ggtgggtttc tccttttccc ttactggcca
     1081 gtgactgtca gagacaccat cagcaagctt tgtgtgatga gatgttttcc atcatgtttt
     1141 ttccttctct tgaatcaaac tcgttatttg gggagagcaa cttcaaggct cctgtataga
     1201 ccttgactat tataagcaga ctttattttt ccctatactg ccactccaga ggtgaataaa
     1261 ctgggtgaac caacacacac ccaataaata aacattttct ctcatttctt ggtttacttc
     1321 catctagtgt gcttttgcat tagcaggaat atctaagtga gatttggatt tctgtagcca
     1381 cagaatgtga atgagatgta gagcaaacca tttatcatat ttttaaaatt ttattttcca
     1441 ttttaaatat atgttttcag tctgtctctc aggctctgct aagtaatata gcttgttgaa
     1501 gtaaccatct ctttgaataa ggggcaatgg aaacaaaact aatttttgga gca
//
LOCUS       XM_032604818            1644 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgi phosphoprotein 3 like (GOLPH3L),
            transcript variant X2, mRNA.
ACCESSION   XM_032604818
VERSION     XM_032604818.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1644
                     /gene="GOLPH3L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739912"
     CDS             276..1133
                     /gene="GOLPH3L"
                     /codon_start=1
                     /product="Golgi phosphoprotein 3-like isoform X1"
                     /protein_id="XP_032460709.1"
                     /db_xref="GeneID:116739912"
                     /translation="MTTLTHRARRTEGGKNSEKKVESEEDTNQDRSQDNEDTEDSKDI
                     RLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGGILIELAMRGRIYLEPPTMRKKRLL
                     DRKVLLKSDSPTGDVLLDETLKHIKATEPTETVQTWIELLTGETWNPFKLQYQLRNVR
                     ERIAKNLVEKGILTTEKQNFLLFDMTTHPVTNTTEKQRLVKKLQDSVLERWVNDPQRM
                     DKRTLALLVLAHSSDVLENVFSSLTDDKYDVAMNRAKDLVELDPEVEGTKHSATEMIW
                     AVLAAFNKS"
     misc_feature    417..1052
                     /gene="GOLPH3L"
                     /note="Golgi phosphoprotein 3 (GPP34); Region: GPP34;
                     pfam05719"
                     /db_xref="CDD:428605"
ORIGIN      
        1 aagaattact tgaaatatag cgttgtacaa agaatctttt gtaagtcact tcatttgtat
       61 ttctttttta aacgtttaca tgcatttctg agtattcatt ttaatcagta tatatttatc
      121 gagcagttac aacgttaaag accttgtgct agttgctatg gagaatataa aaacccaaga
      181 agacaatatc cctgccctca agaagtttac agttgagaga cagccatacc aaaagaaaga
      241 ctataataaa tactttaaag gaaagacagg taagaatgac cactttaact caccgggccc
      301 gtcgtacaga aggagggaag aactctgaaa agaaggtgga aagtgaggaa gacactaatc
      361 aagacagaag tcaagacaat gaggacactg aagactctaa ggatatccgc ctcacgctta
      421 tggaagaagt attgctcctg ggactaaaag ataaagaggg ttacacatct ttctggaatg
      481 actgcatatc atctggcctg cgaggcggca tcctgataga gctggccatg cgaggtcgaa
      541 tctatctaga accccccacc atgcgtaaga agcgactact agacagaaag gtactactaa
      601 agtcagacag cccaacgggt gatgttttac tggatgaaac tctcaaacac atcaaagcaa
      661 ctgaacccac agaaactgtc caaacatgga tagagctact cactggtgag acctggaacc
      721 ctttcaaatt acagtaccag ctgagaaatg taagagagag aattgcaaag aacctagtag
      781 agaagggtat tctaaccact gagaagcaga atttccttct atttgacatg actactcacc
      841 cagtgaccaa tacaacagag aagcagcgac tagtgaaaaa gcttcaagac agtgtcctag
      901 agcggtgggt aaatgaccct cagcgtatgg acaagcgaac actagcacta ctggtgctag
      961 cccactcctc tgacgtgcta gagaatgtct tctcctctct gacagatgac aagtatgatg
     1021 tggcaatgaa tcgggccaag gacttagtgg aactggaccc tgaggtagag gggacaaagc
     1081 acagtgccac agagatgatc tgggctgtgc tggcagcctt caataaatcc taaagtcagc
     1141 aggtgggttt ctccttttcc cttactggcc agtgactgtc agagacacca tcagcaagct
     1201 ttgtgtgatg agatgttttc catcatgttt tttccttctc ttgaatcaaa ctcgttattt
     1261 ggggagagca acttcaaggc tcctgtatag accttgacta ttataagcag actttatttt
     1321 tccctatact gccactccag aggtgaataa actgggtgaa ccaacacaca cccaataaat
     1381 aaacattttc tctcatttct tggtttactt ccatctagtg tgcttttgca ttagcaggaa
     1441 tatctaagtg agatttggat ttctgtagcc acagaatgtg aatgagatgt agagcaaacc
     1501 atttatcata tttttaaaat tttattttcc attttaaata tatgttttca gtctgtctct
     1561 caggctctgc taagtaatat agcttgttga agtaaccatc tctttgaata aggggcaatg
     1621 gaaacaaaac taatttttgg agca
//
LOCUS       XM_032604824            1072 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgi phosphoprotein 3 like (GOLPH3L),
            transcript variant X3, mRNA.
ACCESSION   XM_032604824
VERSION     XM_032604824.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1072
                     /gene="GOLPH3L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739912"
     CDS             95..820
                     /gene="GOLPH3L"
                     /codon_start=1
                     /product="Golgi phosphoprotein 3-like isoform X2"
                     /protein_id="XP_032460715.1"
                     /db_xref="GeneID:116739912"
                     /translation="MTTLTHRARRTEGGKNSEKKVESEEDTNQDRSQDNEDTEDSKDI
                     RLTLMEEVLLLGLKDKEVLLKSDSPTGDVLLDETLKHIKATEPTETVQTWIELLTGET
                     WNPFKLQYQLRNVRERIAKNLVEKGILTTEKQNFLLFDMTTHPVTNTTEKQRLVKKLQ
                     DSVLERWVNDPQRMDKRTLALLVLAHSSDVLENVFSSLTDDKYDVAMNRAKDLVELDP
                     EVEGTKHSATEMIWAVLAAFNKS"
     misc_feature    230..739
                     /gene="GOLPH3L"
                     /note="Golgi phosphoprotein 3 (GPP34); Region: GPP34;
                     pfam05719"
                     /db_xref="CDD:428605"
ORIGIN      
        1 gtgggggtgg ggacaggtgt ccccctgaaa tagagcgcaa gctgcagcct gagtttggcc
       61 gtaacccagg aaataacgtc agagacaggt aagaatgacc actttaactc accgggcccg
      121 tcgtacagaa ggagggaaga actctgaaaa gaaggtggaa agtgaggaag acactaatca
      181 agacagaagt caagacaatg aggacactga agactctaag gatatccgcc tcacgcttat
      241 ggaagaagta ttgctcctgg gactaaaaga taaagaggta ctactaaagt cagacagccc
      301 aacgggtgat gttttactgg atgaaactct caaacacatc aaagcaactg aacccacaga
      361 aactgtccaa acatggatag agctactcac tggtgagacc tggaaccctt tcaaattaca
      421 gtaccagctg agaaatgtaa gagagagaat tgcaaagaac ctagtagaga agggtattct
      481 aaccactgag aagcagaatt tccttctatt tgacatgact actcacccag tgaccaatac
      541 aacagagaag cagcgactag tgaaaaagct tcaagacagt gtcctagagc ggtgggtaaa
      601 tgaccctcag cgtatggaca agcgaacact agcactactg gtgctagccc actcctctga
      661 cgtgctagag aatgtcttct cctctctgac agatgacaag tatgatgtgg caatgaatcg
      721 ggccaaggac ttagtggaac tggaccctga ggtagagggg acaaagcaca gtgccacaga
      781 gatgatctgg gctgtgctgg cagccttcaa taaatcctaa agtcagcagg tgggtttctc
      841 cttttccctt actggccagt gactgtcaga gacaccatca gcaagctttg tgtgatgaga
      901 tgttttccat catgtttttt ccttctcttg aatcaaactc gttatttggg gagagcaact
      961 tcaaggctcc tgtatagacc ttgactatta taagcagact ttatttttcc ctatactgcc
     1021 actccagagg tgaataaact gggtgaacca acacacaccc aataaataaa ca
//
LOCUS       XM_032604836            5853 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus calcium voltage-gated channel subunit
            alpha1 S (CACNA1S), mRNA.
ACCESSION   XM_032604836
VERSION     XM_032604836.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5853
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5853
                     /gene="CACNA1S"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 36 Proteins, and 41%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739924"
     CDS             1..5607
                     /gene="CACNA1S"
                     /codon_start=1
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1S"
                     /protein_id="XP_032460727.1"
                     /db_xref="GeneID:116739924"
                     /translation="MEPSSPQDEGLRKKQPKKPVPEVLPRPPRALFCLTLQNPVRRAC
                     ISIVEWRPFETIILLTIFANCVALAAYLPMPEDDSSALNLGLEKLEYFFLIVFSIEAA
                     MKIIAYGFLFHQDAYLRSGWNVLDFIIVFLGVFTAILEQVNVIQTNTAPMSSKGAGLD
                     VKALRAFRVLRPLRLVSGVPSLQVVLNSVFKAMQPLFHIALLVLFMAIIYAIIGLELF
                     KGKMHKTCYFIGTDIVATVENEKPSPCARTGSGRRCTMNGSECRGGWPGPNHGITHFD
                     SFGFSMLTVYQCITMEGWTDVLYWVNDAIGNEWPWIYFVTLILLGSFFILNLVLGVLS
                     GEFTKEREKAKSRGTFQKLREKQQLDEDLRGYLSWITQGEVMDVDDLREGKLALDEGG
                     SDTESLYEIAGLNKVIQFIRHWRRWNRVFRWKCHDAVKSRVFYWLVILIVALNTLSIA
                     SEHHHQPLWLTHLQDSANRVLLALFTVEMLMKMYGLGLRQYFMSIFNRFDCFVVCSGL
                     LEILLVESGAMTPLGISVLRCLRLLRIFKITKHWTSLSNLVASLLNSIHCIASLLLLL
                     SLFVVIFALLGMQLFGGRYDFEDTEVRRSNFDNFPQALITVFQVLTAEDWNSVMYDGI
                     MAYGGPTYPGVLVCIYFIILFVCGNYILLNVFLAIAVDNLAEAESLTSAQKAKAEERR
                     RRKMSRGLPDKSEEEKSTVAKKLEQKPKGEGIPTTAKLKIDEFESNVNEVKDPYPSAD
                     FPGDDEEDEPEIPISPRPRPLAELQLKEKAVPIPEASAFFIFSPTNKLRVLCHRIVNA
                     TWFTNFILLFILLSSAALAAEDPIRTESVRNQILGYFDIVFTSVFTVEIVLKMTTYGA
                     FLHKGSFCRNYFNILDLVVVAVSLISMGLESSTISVVKILRVLRVLRPLRAINRAKGL
                     KHVVQCVFVAIRTIGNIVLVTTLLQFMFACIGVQLFKGKFFSCNDLSKRTEEECRGYY
                     YVYKDGDPTQMELRPRQWTHNNFHFDNVLSAMMSLFTVSTFEGWPELLYRAIDSHKED
                     QGPVYNEHPEMAIFFIVYIILIAFFMMNIFVGFVIVTFQEQGETEYKNCELDKNQRQC
                     VQYALKARPLKCYIPKNPCQYQVWYIVTSSYFEYLMFALIMLNTICLGMQHYNQSEQM
                     DHISDVLNVAFTTIFTVEMVLKLMAFKARGYFGDPWNVFDFLIVIGSIIDVILSEIDT
                     FLASSGGLYCLGGSCGNVDPDESARISSAFFRLFRVLRLIKLLSRAEGVRTLLWTFIK
                     SFQALPYVALLIVMLFFIYAVIGMQLLGKVALVDGTQINRNNNFQTFPQAVLLLFRCA
                     TGEAWQEILLACSYGQLCDPESDYAPGEERTCGTDFAYYYFISFYMLCAFLIINLFVA
                     VIMDNFDYLTRDWSILGPHHLDEFKAIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFG
                     KFCPHRVACKRLVGMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEQANEELRAII
                     KKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQEHFRKFMRRQEEYYGYRPKKDT
                     VQIQAGLRTLEEEAAPEIRRTISGDLTAEEELERAMVEAAMEEGIFRRTGGLFGQVDS
                     FLERTNSLPPHMANQRPLQFTEIEMQELESPVFLEDFPQHPSTNPLARANTNNANANV
                     AGGNSNPGNSPAFFSVHSEGELPGETETPASRGGASGRPQGTLGPHSKSHGERLQGQL
                     PRRVIHGAQAPANPCQLVGTQSLVPEERSPTPGSLPEEAPPKDGTPRCPAPAMALLIR
                     EALIRGGLDTLAADPKFVMATGHTLVEACQMELQEVEVAAAELLKGRETLEGVASARG
                     RWSLGSSLGSLDQHQGSQETLIPRRL"
     misc_feature    148..1035
                     /gene="CACNA1S"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    1291..2016
                     /gene="CACNA1S"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    2392..3225
                     /gene="CACNA1S"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    3349..4176
                     /gene="CACNA1S"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    4201..4362
                     /gene="CACNA1S"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; Region: GPHH; pfam16905"
                     /db_xref="CDD:465306"
     misc_feature    4390..4608
                     /gene="CACNA1S"
                     /note="Voltage gated calcium channel IQ domain; Region:
                     Ca_chan_IQ; pfam08763"
                     /db_xref="CDD:462591"
     misc_feature    4669..5484
                     /gene="CACNA1S"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; Region: CAC1F_C; pfam16885"
                     /db_xref="CDD:465298"
ORIGIN      
        1 atggagccgt cctcgcccca ggatgagggc ctgaggaaga agcagcccaa gaagccggtt
       61 cccgaggtcc tgcccaggcc gccgcgggcc ttgttctgct tgactctcca gaaccctgtg
      121 aggagggcct gcatcagcat cgtggaatgg agacccttcg agaccatcat cttactcacc
      181 atctttgcca actgtgtggc cctggccgcg tacctgccca tgccggagga cgacagcagc
      241 gctctgaacc tcggcctgga gaagctggag tacttcttcc tcatcgtctt ctccattgag
      301 gccgccatga agatcattgc ctacggcttc ctgttccacc aggacgccta cctgcgcagc
      361 ggctggaacg tgctggactt tatcatcgta ttcctggggg tcttcaccgc gattctggag
      421 caggtcaacg tcatccagac caacacagcc ccgatgagca gcaaaggcgc cggcttggac
      481 gtcaaggctc tgagggcctt ccgcgtgctc agaccgctcc ggctggtgtc cggggtgccc
      541 agcctgcagg tggtcctcaa ctccgtcttc aaggccatgc agcccctgtt ccacatcgcc
      601 ctgcttgtac tcttcatggc catcatctac gccatcatcg ggctggagct cttcaagggc
      661 aagatgcaca agacctgcta cttcatcggg acggacatcg tggccacggt ggagaacgag
      721 aagccgtcgc cctgcgcccg gacggggtca gggcgccgct gcaccatgaa cggcagcgag
      781 tgccggggcg gctggccagg ccccaaccac ggcatcaccc acttcgacag cttcggcttc
      841 tccatgctca ccgtgtacca gtgcatcacc atggagggct ggaccgacgt cctctactgg
      901 gtcaacgatg ccattgggaa cgagtggccc tggatctact ttgtcaccct gatcctgctg
      961 ggctccttct tcatcctcaa cttggtgctg ggcgtcctga gcggggaatt caccaaggag
     1021 cgggagaagg ccaagtccag gggaaccttc cagaagctgc gggagaagca gcagctggat
     1081 gaggacctcc ggggctactt gagctggatc acgcagggcg aggtcatgga tgtggacgac
     1141 ttgagagaag ggaagctggc tttggatgaa ggtggctctg acacagagag cctgtatgaa
     1201 atcgcaggct tgaacaaagt catccagttc atccgacact ggaggcggtg gaaccgcgtc
     1261 ttccgctgga agtgccacga cgcggtgaag tccagggtct tctactggct ggtcatcctg
     1321 atcgtcgccc tcaacaccct gtcgatcgcc tcggaacacc accaccagcc tctctggttg
     1381 acccacctgc aagacagcgc caaccgggtg ctgctggccc tgttcaccgt ggagatgttg
     1441 atgaagatgt atgggctggg cctgcgccag tacttcatgt ccatcttcaa ccgcttcgac
     1501 tgcttcgtgg tgtgtagcgg cctcctggag atcctgctgg tggagtcggg ggccatgaca
     1561 cccctcggca tctccgtgct gcgctgcctc cgccttctca ggattttcaa gatcaccaag
     1621 cactggacgt ccctgagcaa cctggtggcc tcgctgctga actccatcca ctgcatcgcg
     1681 tccctgctgc tgctgctgtc cctgttcgtc gtcatcttcg ccctcctggg catgcagctc
     1741 ttcgggggca ggtacgactt tgaggacacg gaggtgcggc gcagcaactt cgacaacttc
     1801 ccgcaggccc tcatcaccgt cttccaggtg ctgacagctg aggactggaa ctccgtgatg
     1861 tacgacggga tcatggccta cggcggcccg acctaccccg gggtgctcgt atgcatctat
     1921 ttcatcatcc tgttcgtctg tggcaactac atactgctca acgtcttcct ggccatcgcg
     1981 gtagacaacc tggcggaggc ggagagcctg acgtcggccc agaaggccaa ggccgaggag
     2041 cggaggcgcc ggaagatgtc cagggggctc ccagacaagt cagaggagga gaagtcgacg
     2101 gtggccaaga agctggagca gaaacccaag ggggagggca tccccaccac ggccaagctg
     2161 aaaatcgatg agtttgaatc caatgtcaat gaggtgaagg acccctaccc gtcagccgac
     2221 ttcccaggag atgatgagga agacgaaccc gagatcccga taagcccacg accccgcccg
     2281 ctggctgagc tgcagctgaa ggagaaagcc gtgcccattc cagaagccag cgccttcttt
     2341 atcttcagcc ccaccaataa gctccgcgtc ctgtgccatc gcatcgtcaa cgccacctgg
     2401 ttcaccaact tcatcctgct cttcatcctg ctcagcagtg ccgcgctggc tgctgaggac
     2461 cccatccgga ccgagtccgt gaggaaccag atccttgggt attttgacat cgtgttcacc
     2521 tctgtcttca ctgtggagat tgtcctcaag atgaccacct atggggcctt cctgcacaag
     2581 ggctccttct gccgcaacta cttcaacatc ctggacctgg tggtggtggc cgtgtccctc
     2641 atctccatgg gactcgagtc tagcaccatc tccgtggtga aaatcctgag ggtactgagg
     2701 gtactccgac cgctccgggc catcaacaga gccaaagggc tgaagcacgt ggtgcagtgc
     2761 gtgttcgtgg ccatccgcac catcgggaac atcgtcctgg tcaccaccct cctgcagttc
     2821 atgttcgcct gcatcggcgt ccagctcttc aaggggaaat tcttcagctg caatgacttg
     2881 tccaagagga cagaggagga gtgcaggggc tactactacg tgtacaagga tggggacccc
     2941 acgcagatgg agctgcgtcc ccgccagtgg acacacaaca acttccactt cgacaacgtg
     3001 ctctcggcca tgatgtcact cttcacggtg tccaccttcg aggggtggcc ggagctgctg
     3061 tacagagcca ttgactctca caaggaggac cagggccccg tgtacaacga gcacccggag
     3121 atggccatct tcttcatcgt ctacatcatc ctcatcgcct tcttcatgat gaacatcttc
     3181 gtgggcttcg tcatcgtcac cttccaggag cagggggaga ccgagtacaa gaactgcgag
     3241 ctggacaaga accagcgcca gtgcgtgcag tacgccctga aggcccgccc cctgaagtgc
     3301 tacatcccca aaaacccgtg ccagtaccag gtgtggtaca tcgtcacctc ctcctacttc
     3361 gagtacctaa tgttcgccct cattatgctc aacaccatct gcctgggcat gcagcattac
     3421 aaccagtcgg agcagatgga ccacatctca gacgtcctca acgtggcctt caccaccatc
     3481 ttcacggtgg agatggtcct caagctcatg gccttcaagg ccaggggcta ttttggggac
     3541 ccctggaatg tgtttgactt cctgattgtc atcggcagca tcatcgacgt catcctcagt
     3601 gagattgaca ctttcctggc ctccagcggg ggactgtatt gcctgggtgg cagctgcggg
     3661 aacgttgacc ccgacgagag cgcccgcatc tccagcgcct tcttccgcct gttccgcgtc
     3721 ctgaggctga tcaagctgct gagccgcgcg gagggcgtgc gcacgctgct ctggaccttc
     3781 atcaagtcct tccaggccct gccctacgtg gctctgctca tcgtcatgct cttctttatc
     3841 tacgccgtca tcggcatgca gctgctcggg aaggtcgccc tggtggacgg gacccagatc
     3901 aaccggaaca acaacttcca gaccttcccc caggccgtgc ttctgctgtt caggtgtgcc
     3961 acgggtgagg cgtggcagga gatcctgctg gcctgcagct acggccagct atgcgacccc
     4021 gagtcggact acgccccggg ggaggagcgc acctgtggca ctgacttcgc ctactactac
     4081 ttcatcagct tctacatgct ctgtgccttc ctgatcatca acctctttgt ggctgtcatc
     4141 atggacaact ttgactacct cacacgggac tggtccatcc tgggccctca tcacctggac
     4201 gaattcaagg ccatctgggc agagtatgac ccagaggcta agggcagaat caagcacctg
     4261 gacgtggtga ccctgctgag aaggatccag ccccctctgg gctttgggaa gttctgccca
     4321 caccgggtag catgtaagcg gctggtgggc atgaacatgc ccctgaacag cgacggcacg
     4381 gtcaccttca acgccactct cttcgccctg gtccgcacgg cactcaagat caagacggaa
     4441 ggtaacttcg aacaggccaa cgaggagctg cgggccatca tcaagaagat ctggaagagg
     4501 accagcatga agctcctgga ccaggtcatc cctcccatag gagatgacga ggtgacggtg
     4561 gggaagttct acgccacatt tctcatccag gagcacttcc ggaagttcat gaggcgccag
     4621 gaggaatatt atgggtaccg gcccaagaag gacaccgtgc agatccaggc cggactgcgg
     4681 acccttgagg aagaggcagc ccctgagatc cgccgcacca tctccggaga cctgacggcc
     4741 gaggaagagc tggagagagc catggtggag gccgcgatgg aggaagggat attccggagg
     4801 accggaggcc tgtttggcca ggtggacagc ttcctggaaa ggaccaactc cctgcctcca
     4861 cacatggcca accagagacc cctccagttt actgaaatag agatgcagga gctggagtca
     4921 cccgtcttct tggaggactt ccctcagcat ccaagcacca acccccttgc ccgtgccaac
     4981 accaacaatg ccaacgccaa cgttgccggt ggcaacagca accctggcaa cagcccggca
     5041 tttttcagcg tccactctga aggggagctc ccaggggaga cagagacgcc tgccagcaga
     5101 ggaggagctt ccggccggcc ccaggggacc ctgggacccc acagcaagtc ccatggggag
     5161 aggctgcagg gacagctgcc ccggagggtg atacacggag ctcaggcacc tgccaacccc
     5221 tgccagcttg tggggacaca gtctctggtg cccgaggaga ggagccccac cccagggtcc
     5281 ctgcccgagg aagcgccccc caaggatggt acccccaggt gcccggcccc agccatggcc
     5341 ctgctgatcc gagaggctct gattcgaggg ggcctggaca ccttggcggc tgatcctaag
     5401 ttcgtcatgg caacgggcca caccctggtg gaagcctgcc agatggaact gcaggaagtg
     5461 gaggtggcag ccgccgagct tctgaaggga cgagagaccc tggagggtgt ggccagtgcc
     5521 cgggggcgtt ggagcctcgg gtcctccctg ggaagcctcg accagcatca gggctcccag
     5581 gagaccctca ttccccgcag gctgtgaagg ccacgggtgt cagcctgggc ttagagccgg
     5641 catggccaag ggtggggggc tggcgcggga gggttggccc agcacggcag ccctccatct
     5701 cagcagctag acggacaaac agacaggaac cacccacaag gtcaggaggt agatggacag
     5761 gcccttctcc tcaccagcaa gaggcgtgat gggatggagc ttctggggtc attcaaagag
     5821 gcctggtcag tgccagcagg gcattaaagt ctc
//
LOCUS       XM_032604850            7421 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus astrotactin 1 (ASTN1), transcript variant
            X1, mRNA.
ACCESSION   XM_032604850
VERSION     XM_032604850.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7421
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7421
                     /gene="ASTN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739929"
     CDS             28..3936
                     /gene="ASTN1"
                     /codon_start=1
                     /product="astrotactin-1 isoform X1"
                     /protein_id="XP_032460741.1"
                     /db_xref="GeneID:116739929"
                     /translation="MALARLCALLACCWGPAAVLATAAGDVDPSKELECKLKSITVSA
                     LPFLRENDLSIMHSPSASEPKLLFSVRNDFPGEMVVVDDLENTELPYFVLEISGNTED
                     IPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQRESAEEELRILHISVMGGM
                     IALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRESLR
                     NARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQ
                     GCNEKAGMDLTPGSDNAKLSLMNKYKDNIIATSPVDSNHQQATLLSHTSSSQRKRINN
                     KARAGSAFLNPEGDSSTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISIT
                     SCVIGLVCSSHVSCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVVLFS
                     QQNSSGPWAMDLCARRLLDPCEHQCDPETGRREHRAEGECLCYEGYMKDPVHKHLCIR
                     NEWGTNQGPWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVIPPAELA
                     VNPSAKCKTDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFR
                     CISDRKLDSTGCMCPSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPDD
                     PAVYNILMFCGCIEDYKLGVDGRSCQLITETCPEGGDCGESRELPMNQTLFGEMFFGY
                     NNHSKEVAAGQVLKGTFRQNNFARGLDQQLPDGLVVATVPLENQCLEEISEPTPDPDF
                     LTGMVNFSEVSGYPVLQHWKVRSVMYHIKLKQVTVSQALSNALHSLDGATSRGDFVAL
                     LDQFGNHYIQEAIYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERERDPK
                     VLTFPEYIASLSESGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPDTPAEPVLLEVT
                     RAAPIYELVTNNQTQRLLLEATMSSLWCSGTGDVIEDWCRCDPTAFGTDGLPACAPLP
                     QPVLRLSTVHEPSSTLVVLEWEHSEPPIGVQIVDYLIRQEKVTDRMDHSKVETETVLS
                     FVDDIISGAKSPCAMPSQVPDKQLTTISLIIQCLEPDTIYMFTLWGVDNTGRRSRPSD
                     VIVKTPCPVVDDVKAQEIADKIYNLFNGYTSGKEQQTAYNTLLDLGSPTLHRVLYHYN
                     QHYESFGEFTWRCEDELGPRKAGLILSQLGDLSNWCNGLLQEPKISLRRSSLKYLGCR
                     YSEIKPYGLDWSELSRDLRKTCEEQTLSIPYNDYGDSKDI"
     misc_feature    310..1974
                     /gene="ASTN1"
                     /note="Astrotactin 1/2 N-terminal; Region: ASTN_1_2_N;
                     pfam19441"
                     /db_xref="CDD:437273"
     misc_feature    2005..2148
                     /gene="ASTN1"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    2461..3024
                     /gene="ASTN1"
                     /note="membrane-attack complex / perforin; Region: MACPF;
                     smart00457"
                     /db_xref="CDD:214671"
     misc_feature    2821..3453
                     /gene="ASTN1"
                     /note="ASTN1/2 EGF-like and Fn(III) domains; Region:
                     ASTN1_2_EGF_Fn; pfam19743"
                     /db_xref="CDD:437575"
     misc_feature    3484..3762
                     /gene="ASTN1"
                     /note="Annexin-like domain; Region: Annexin_like;
                     pfam18411"
                     /db_xref="CDD:465756"
ORIGIN      
        1 ctgggaggaa ggcggccggg gctcaagatg gctttagcca ggctctgcgc cctgctcgcc
       61 tgctgctggg ggccggcggc ggtgctggcc acggccgcgg gcgacgtgga tccttccaag
      121 gagctggagt gcaagctgaa gagcatcacg gtgtcggcgc tgcctttcct gcgcgagaac
      181 gacctgagta tcatgcacag cccctcggcc tccgagccca agctcctctt ctcggtacgc
      241 aacgacttcc cgggagaaat ggtcgtggtg gacgacctgg agaacacgga gctgccctac
      301 ttcgtgctgg agatctcagg gaacacggag gacatccctc tggtgcgctg gaggcagcag
      361 tggctggaga atggcacttt actttttcac atccaccacc aagacggtgc cccaagcctc
      421 cctggacaag acccaaccga agaaccccag cgtgagtcgg cagaagagga gctgagaatc
      481 ctccacatct cagtcatggg tggcatgata gcgctgctgc tgtccatctt gtgcctcgtg
      541 atgatcctgt acactcgccg gcgctggtgc aagcgccgcc gggtccccca gccccagaag
      601 agtgccagcg ctgaggctgc caatgagatt cactacattc cttctgtgct gatcggcggg
      661 cacgggcggg agagtctgcg caatgcccgc gtgcagggcc acaactccag cggcaccctg
      721 agcatccggg agacacccat cctggatggc tacgagtacg acatcactga cctgcgccac
      781 cacctgcaga gggagtgcat gaacggaggg gaggacttcg ccagccaggt tacccgcacc
      841 ctcgactccc tgcagggctg caacgagaag gcagggatgg acctcacgcc aggaagcgac
      901 aatgccaagc tgtcgctgat gaacaagtat aaagataaca tcattgctac cagccccgtg
      961 gactccaacc accagcaggc cactctgctt tctcacacct ccagtagcca gagaaagagg
     1021 atcaacaaca aagcaagagc tggttccgcc ttcctgaacc ctgaagggga ttctagcaca
     1081 gaggcagaaa atgaccccca gctgaccttt tacactgacc cctcgcggag ccgaaggcgc
     1141 agtagagtgg gctctccccg aagtcctgtg aataagacca ccttgacatt gatcagcatc
     1201 accagctgcg tgatcggcct tgtgtgttcc tctcacgtca gctgccctct cgttgtcaaa
     1261 atcaccctgc acgtccccga gcacctgatc gctgatggga gccgcttcat cttgctggag
     1321 gggagccagc tggatgccag cgactggctg aaccctgccc aagtggttct cttctctcag
     1381 cagaactcca gtgggccctg ggccatggac ctttgtgccc ggcggctcct ggacccctgt
     1441 gaacaccagt gtgaccccga aactggtagg cgggagcacc gggcagaggg ggaatgcctc
     1501 tgctacgagg gttacatgaa ggatccagtg cacaagcatc tttgcattcg gaatgaatgg
     1561 ggaaccaacc aagggccttg gccttataca atatttcagc gaggctttga cctggttttg
     1621 ggagaacaac cttctgataa aatattcaga ttcacctaca ccctcgggga gggcatgtgg
     1681 ttacccctca gcaagagctt tgtgattcca ccagcggaac tggccgtcaa cccctcagca
     1741 aagtgtaaga cagacatgac agtgatggag gatgctgtgg aggtcagaga ggagctgatg
     1801 acctcatcct cctttgacag cctggaggtc ctcttagatt cctttggacc agtccgtgat
     1861 tgcagcaagg ataatggggg ctgcagtaag aacttccgtt gcatctcaga tcgcaagctg
     1921 gactccactg gttgcatgtg cccatccgga ctcagcccca tgaaggacag ctctggttgc
     1981 tatgaccgcc acatcggggt ggactgctct gatggcttca acggtggctg tgagcagctg
     2041 tgtctgcagc agatggcgcc cttcccggat gaccccgccg tgtacaacat cctcatgttc
     2101 tgcgggtgca tcgaggatta caagcttggt gtagatggac gctcttgcca gctcatcaca
     2161 gagacctgtc cagagggagg tgactgtggg gaaagcagag agctccccat gaaccagacc
     2221 ctctttgggg agatgttctt tggttacaac aaccattcca aggaagtggc tgctggacag
     2281 gtgctgaaag gaacattcag gcaaaacaac tttgctcgag gtttagacca gcaactgcca
     2341 gatggtcttg tggtggccac tgtccccctg gagaatcagt gcctggagga aatctcagaa
     2401 ccaaccccgg acccagactt cttgactggg atggtgaact tcagtgaggt gtccggatac
     2461 cccgtcctgc agcactggaa ggtccgctct gtgatgtacc acatcaaact caaacaagtg
     2521 accgtctctc aggccctcag caatgctctc cactccctag acggggctac atctcgtggg
     2581 gattttgtag ccttgttgga ccagtttggc aaccattaca tccaggaagc tatctacggc
     2641 tttgaggaat cctgctctat ctggtaccca aacaagcagg tccagcggcg actctggctg
     2701 gaatacgaag acatcagcaa aggcaactcc ccatccgacg agtcagagga gcgggaaaga
     2761 gaccccaagg tgctgacatt cccagaatac attgccagct tgtcagagtc tggcaccaag
     2821 cgcatggcgg ctggagtccg catggagtgc cagagcaagg gacggtgccc ctcgtcctgc
     2881 cccctgtgtc atgtgacatc cagccctgac acccctgccg agccagttct gctggaggtg
     2941 accagagcag cccccatcta tgaactggtc accaacaacc agacacagag gctcttgctg
     3001 gaggccacca tgagctccct ctggtgctcc gggaccggag atgtcatcga ggactggtgt
     3061 cgatgtgacc ccaccgcttt cggaactgat ggactccctg cctgtgcgcc tctcccacag
     3121 cccgtgctca gactctccac ggttcatgag cccagcagca ccctcgtggt cctggaatgg
     3181 gaacactcag agcctccaat cggggtgcag attgtagatt acctcatccg tcaagaaaag
     3241 gtcactgaca ggatggacca ctccaaggtg gagacagaaa cggtgctgag ctttgttgac
     3301 gacatcatct ccggagcgaa gtctccttgt gcgatgccct ctcaggtccc ggacaagcag
     3361 ctcaccacca tctctctgat catacaatgc ctggaacctg acaccatcta catgttcacc
     3421 ctgtggggag tggacaacac aggacgacgc tccaggccaa gtgacgtgat cgtgaagacc
     3481 ccttgcccag tggtggatga tgtcaaagcc caagaaatag cagacaagat ctacaatctc
     3541 ttcaatggct ataccagtgg gaaggagcag cagaccgcct acaacaccct cctggatctg
     3601 ggttccccca cgctccatcg agtcctctac cactataacc agcattacga gagttttgga
     3661 gaattcacct ggcggtgtga ggatgaatta ggccccagga aagctggcct catcctttct
     3721 cagcttgggg atctcagcaa ttggtgcaat ggactccttc aggaacccaa gataagcttg
     3781 cgacgcagct cccttaagta cctgggctgc cgctacagcg agatcaagcc ctacggactt
     3841 gactggtcag agcttagccg ggaccttagg aagacgtgtg aggagcagac cctgagcatc
     3901 ccttacaacg attatgggga cagcaaagac atctagcgcc atgatgccag agagcagctg
     3961 ccaaaaggaa gcaggagaga ggaggggaaa tgtctgggtt ggtgtgtgga tttttaatgt
     4021 ttttaaggga acgtttaaac ctccacaggc aacatctaaa ctagcgagaa ggtgatcctt
     4081 gcttcctgca gaacttctcg ggtgtcatgt tctccatctg tgtggtcagt aagcctgcta
     4141 gccagggctt cctaaatttc ttcttaggga attactttgg ggcttgtttt gcggttaatt
     4201 tgttttgttc attttttgtc caagaggttc atcaaaatgc tcgggttctg ccatgcttct
     4261 catgaaaggg ccattaggtt ggtgcaccct gtgctcactg agttcctatg tcccttgcac
     4321 ctggggacag agatgaggcc agaaagttgt agagtggcct cagaccccag cctcagatgt
     4381 cctagggaag ctctcacact aagaccctaa gctctgctca cagagaacaa cagcaagaaa
     4441 actgggaagg tggcccctgt gtaggtctca tggtttccgc ccccggcctt ccgattgcta
     4501 tcttcacact gcagaggtga acttcgcctc cattatgggc cccggtcgac ctcctggatt
     4561 ttcaagggaa ttttaaggga attaaatctc cttctggaag aactctgcct tctcctctga
     4621 acaatatatc tttaagaggc aataaaatgc tacctgtcta atgcccctgc agagcagtct
     4681 acctgggagt ctggttagca gtccatgttc tcgaaaaaaa aaaaatgtag tttcttcttt
     4741 taaaaagctc ctgtacctcc agggtgaact tctgcagacc agtagtgcat gtcgcatgcc
     4801 cggattctct gtggtgtctg cgccgcttac cttgcacaga tccgtcccgg ctgatgtccg
     4861 ctctggtcag gacgggtcaa ggcctccatg tcagtgtttt agtgaactca agttattacc
     4921 catcacaaaa cacttccgtc cattctcccc tttgccaaat ttgcttagtt atgttgctag
     4981 ttttgcaaat catttctctg ggtgaggatt ccattttcac cccccatcta gttgccagga
     5041 gcagcagagg ttctgtgtag gtgagctccc ctgaccacag gtaagggcca ggccactgct
     5101 tctgccccgc tccccgagca atggcactgg cacaagcggg ggcctggcca acgggaagtc
     5161 cagcctctca gaaagagctc tgcagggccc tgtggaccag caatggcctt aattgtcctc
     5221 acacacctca gaggcctgaa cacacacgtt cagccaccct gcctttgacc agggctcctc
     5281 atttggaaac acaagagaaa ggtcaggaag gagatgcaga agctataagg cctgttgtca
     5341 ttgagccgta ttgaattttt tctaagtggt tagaatgaca gagcttgttt attgagtgct
     5401 tactgtgtgc cagacgctgc tctaagcact ttacgtaacg ctgaattcta gcaacagctc
     5461 gtttcttacc tacctgaacc accatttgaa ttcaggctgt cggactccag agcacaggat
     5521 tttaacccct cgccctcctc agctctgctt tccatgttgc ctggacgcgc agctctccct
     5581 ggcccctgcc tccatggcac agatatgcct gcagtgcgtt gcagtgggag gagggcacag
     5641 tgcatcctaa ccctgcagcc ggggtgtcct ttgggaccac ggatctgcag cacaagcctt
     5701 ctccccgcca gtgcctgaga gtgagcctgt ggcagggctg caagcacagg tgacctcacg
     5761 cccctctctg catctttctg cagaaagatg gaaagacagt atatcgactc tggaatgcag
     5821 ccccctcagt tccagagcaa aggctggcag aaaactgaga cccacctggg gtcaatgccg
     5881 ggcggtgggt gaaatgcctc ggaagccagt gtctcacctt gaccgaagag gaaggggtac
     5941 aggaggcagc agtgggaccc cagccagtgg ggcggggcct tggtgagagc tggttttgcc
     6001 gctgctgctc ctttattcaa gtctgcacag aaagctggat ctgcacagca gaggaccagg
     6061 accttgggcc agagaggggg gccggggagt ggcaccaggg acaccgttcc ctgtccctcc
     6121 ttctgtgtta ttaaaataaa gcacgctcac gctttccctc cctcctgccg tctcccccca
     6181 ggtccatcct catctttgtc tgcttctcct gcctgatacc cttcctcctt agccccgtcc
     6241 ttctccctcc gtgaccctct ccctccttca gtgtgccctg tgccctccac acatacacac
     6301 agcacacact ctacacagta tatacacaca ctacccacac tgtacacact cggcagagag
     6361 tatatacaca tactacacac cccagacaca tgcacacgct acacacgcaa cacacacaca
     6421 tgtgcacaca ctacacgctc tacaaactct gcacagtgta tacacatact acacgcacac
     6481 aacacacacg ctacacactc cacacacaga atatgcacat actacatgca cagtatacac
     6541 actacacaca cacactatag actatacaca ttatttacac actacacaaa tacagactat
     6601 aggcacacac actatacaca tacagactgt atgcacacac cctctgcgta tactgtacac
     6661 actacacata ggcacacaca ctacgtacta cacgcagcca cagaggtaca cagacacaca
     6721 ctctacatcc acagtgtaca cacacaacac acactacatc cacagtgtac acacacacac
     6781 agtctacaca cacactacac acacacatgc acgctgtaca cacaacctct atgcctgggt
     6841 cccacctact ttcgagttaa aaataaggcc catatgaatg gagtaggaga gggtgctcgg
     6901 gccccctgag gatttcactc ggggattttg cccgaggaag gcaagctcgc tcacaccctg
     6961 acgacactgc ccacagtttg actgcaggaa cccattctga ctagaagggt gacggacggg
     7021 gccactatta aacctcgact ttccaagctg ccaaacaggt cttaagggag ttgcttatac
     7081 ccaccaacac tctgccagcc ctgggatccc acgaggccac tggtgtctcc tcctgagtgg
     7141 acatggccca ctgtaatggc acgagcccct taacggagtg tgcggctgtc ttccgtggag
     7201 tttggtccgt gcgttacttt cagttaatcg cacttcttga tatttgaaaa tgttctatta
     7261 aaaaactgag tgtgaaaaaa aaccacttta ctactataga aggaagggag agtatagtgt
     7321 gaccaacttc aggtatagca gtattgttta aaagagaatc ggtgtacgat tatacaaatg
     7381 gaataatcaa ctaaataata aacaaagctg tcagtaagtg t
//
LOCUS       XM_032604858            7596 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus astrotactin 1 (ASTN1), transcript variant
            X2, mRNA.
ACCESSION   XM_032604858
VERSION     XM_032604858.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7596
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7596
                     /gene="ASTN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 6
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116739929"
     CDS             227..4111
                     /gene="ASTN1"
                     /codon_start=1
                     /product="astrotactin-1 isoform X2"
                     /protein_id="XP_032460749.1"
                     /db_xref="GeneID:116739929"
                     /translation="MALARLCALLACCWGPAAVLATAAGDVDPSKELECKLKSITVSA
                     LPFLRENDLSIMHSPSASEPKLLFSVRNDFPGEMVVVDDLENTELPYFVLEISGNTED
                     IPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQRESAEEELRILHISVMGGM
                     IALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRESLR
                     NARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQ
                     GCNEKAGMDLTPGSDNAKLSLMNKYKDNIIATSPVDSNHQQATLLSHTSSSQRKRINN
                     KARAGSAFLNPEGDSSTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISIT
                     SCVIGLVCSSHVSCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVVLFS
                     QQNSSGPWAMDLCARRLLDPCEHQCDPETGECLCYEGYMKDPVHKHLCIRNEWGTNQG
                     PWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVIPPAELAVNPSAKCK
                     TDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFRCISDRKLD
                     STGCMCPSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPDDPAVYNILM
                     FCGCIEDYKLGVDGRSCQLITETCPEGGDCGESRELPMNQTLFGEMFFGYNNHSKEVA
                     AGQVLKGTFRQNNFARGLDQQLPDGLVVATVPLENQCLEEISEPTPDPDFLTGMVNFS
                     EVSGYPVLQHWKVRSVMYHIKLKQVTVSQALSNALHSLDGATSRGDFVALLDQFGNHY
                     IQEAIYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERERDPKVLTFPEYI
                     ASLSESGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPDTPAEPVLLEVTRAAPIYEL
                     VTNNQTQRLLLEATMSSLWCSGTGDVIEDWCRCDPTAFGTDGLPACAPLPQPVLRLST
                     VHEPSSTLVVLEWEHSEPPIGVQIVDYLIRQEKVTDRMDHSKVETETVLSFVDDIISG
                     AKSPCAMPSQVPDKQLTTISLIIQCLEPDTIYMFTLWGVDNTGRRSRPSDVIVKTPCP
                     VVDDVKAQEIADKIYNLFNGYTSGKEQQTAYNTLLDLGSPTLHRVLYHYNQHYESFGE
                     FTWRCEDELGPRKAGLILSQLGDLSNWCNGLLQEPKISLRRSSLKYLGCRYSEIKPYG
                     LDWSELSRDLRKTCEEQTLSIPYNDYGDSKDI"
     misc_feature    509..2149
                     /gene="ASTN1"
                     /note="Astrotactin 1/2 N-terminal; Region: ASTN_1_2_N;
                     pfam19441"
                     /db_xref="CDD:437273"
     misc_feature    2180..2323
                     /gene="ASTN1"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    2636..3199
                     /gene="ASTN1"
                     /note="membrane-attack complex / perforin; Region: MACPF;
                     smart00457"
                     /db_xref="CDD:214671"
     misc_feature    2996..3628
                     /gene="ASTN1"
                     /note="ASTN1/2 EGF-like and Fn(III) domains; Region:
                     ASTN1_2_EGF_Fn; pfam19743"
                     /db_xref="CDD:437575"
     misc_feature    3659..3937
                     /gene="ASTN1"
                     /note="Annexin-like domain; Region: Annexin_like;
                     pfam18411"
                     /db_xref="CDD:465756"
ORIGIN      
        1 cttccccaga taagcagctc cgggaaacaa agagcgcggg ctctccaggc atcagcgctt
       61 aagccctgca ccaggctagc ggcgtctcat tccggggacc agagctttcc cggctccaca
      121 tctcctcccc aacgtccccc gcctcccgcg ctcgctcgct cgctccctcc cgctcgctgc
      181 ctcccccacc ttcgcggcgc tgggaggaag gcggccgggg ctcaagatgg ctttagccag
      241 gctctgcgcc ctgctcgcct gctgctgggg gccggcggcg gtgctggcca cggccgcggg
      301 cgacgtggat ccttccaagg agctggagtg caagctgaag agcatcacgg tgtcggcgct
      361 gcctttcctg cgcgagaacg acctgagtat catgcacagc ccctcggcct ccgagcccaa
      421 gctcctcttc tcggtacgca acgacttccc gggagaaatg gtcgtggtgg acgacctgga
      481 gaacacggag ctgccctact tcgtgctgga gatctcaggg aacacggagg acatccctct
      541 ggtgcgctgg aggcagcagt ggctggagaa tggcacttta ctttttcaca tccaccacca
      601 agacggtgcc ccaagcctcc ctggacaaga cccaaccgaa gaaccccagc gtgagtcggc
      661 agaagaggag ctgagaatcc tccacatctc agtcatgggt ggcatgatag cgctgctgct
      721 gtccatcttg tgcctcgtga tgatcctgta cactcgccgg cgctggtgca agcgccgccg
      781 ggtcccccag ccccagaaga gtgccagcgc tgaggctgcc aatgagattc actacattcc
      841 ttctgtgctg atcggcgggc acgggcggga gagtctgcgc aatgcccgcg tgcagggcca
      901 caactccagc ggcaccctga gcatccggga gacacccatc ctggatggct acgagtacga
      961 catcactgac ctgcgccacc acctgcagag ggagtgcatg aacggagggg aggacttcgc
     1021 cagccaggtt acccgcaccc tcgactccct gcagggctgc aacgagaagg cagggatgga
     1081 cctcacgcca ggaagcgaca atgccaagct gtcgctgatg aacaagtata aagataacat
     1141 cattgctacc agccccgtgg actccaacca ccagcaggcc actctgcttt ctcacacctc
     1201 cagtagccag agaaagagga tcaacaacaa agcaagagct ggttccgcct tcctgaaccc
     1261 tgaaggggat tctagcacag aggcagaaaa tgacccccag ctgacctttt acactgaccc
     1321 ctcgcggagc cgaaggcgca gtagagtggg ctctccccga agtcctgtga ataagaccac
     1381 cttgacattg atcagcatca ccagctgcgt gatcggcctt gtgtgttcct ctcacgtcag
     1441 ctgccctctc gttgtcaaaa tcaccctgca cgtccccgag cacctgatcg ctgatgggag
     1501 ccgcttcatc ttgctggagg ggagccagct ggatgccagc gactggctga accctgccca
     1561 agtggttctc ttctctcagc agaactccag tgggccctgg gccatggacc tttgtgcccg
     1621 gcggctcctg gacccctgtg aacaccagtg tgaccccgaa actggggaat gcctctgcta
     1681 cgagggttac atgaaggatc cagtgcacaa gcatctttgc attcggaatg aatggggaac
     1741 caaccaaggg ccttggcctt atacaatatt tcagcgaggc tttgacctgg ttttgggaga
     1801 acaaccttct gataaaatat tcagattcac ctacaccctc ggggagggca tgtggttacc
     1861 cctcagcaag agctttgtga ttccaccagc ggaactggcc gtcaacccct cagcaaagtg
     1921 taagacagac atgacagtga tggaggatgc tgtggaggtc agagaggagc tgatgacctc
     1981 atcctccttt gacagcctgg aggtcctctt agattccttt ggaccagtcc gtgattgcag
     2041 caaggataat gggggctgca gtaagaactt ccgttgcatc tcagatcgca agctggactc
     2101 cactggttgc atgtgcccat ccggactcag ccccatgaag gacagctctg gttgctatga
     2161 ccgccacatc ggggtggact gctctgatgg cttcaacggt ggctgtgagc agctgtgtct
     2221 gcagcagatg gcgcccttcc cggatgaccc cgccgtgtac aacatcctca tgttctgcgg
     2281 gtgcatcgag gattacaagc ttggtgtaga tggacgctct tgccagctca tcacagagac
     2341 ctgtccagag ggaggtgact gtggggaaag cagagagctc cccatgaacc agaccctctt
     2401 tggggagatg ttctttggtt acaacaacca ttccaaggaa gtggctgctg gacaggtgct
     2461 gaaaggaaca ttcaggcaaa acaactttgc tcgaggttta gaccagcaac tgccagatgg
     2521 tcttgtggtg gccactgtcc ccctggagaa tcagtgcctg gaggaaatct cagaaccaac
     2581 cccggaccca gacttcttga ctgggatggt gaacttcagt gaggtgtccg gataccccgt
     2641 cctgcagcac tggaaggtcc gctctgtgat gtaccacatc aaactcaaac aagtgaccgt
     2701 ctctcaggcc ctcagcaatg ctctccactc cctagacggg gctacatctc gtggggattt
     2761 tgtagccttg ttggaccagt ttggcaacca ttacatccag gaagctatct acggctttga
     2821 ggaatcctgc tctatctggt acccaaacaa gcaggtccag cggcgactct ggctggaata
     2881 cgaagacatc agcaaaggca actccccatc cgacgagtca gaggagcggg aaagagaccc
     2941 caaggtgctg acattcccag aatacattgc cagcttgtca gagtctggca ccaagcgcat
     3001 ggcggctgga gtccgcatgg agtgccagag caagggacgg tgcccctcgt cctgccccct
     3061 gtgtcatgtg acatccagcc ctgacacccc tgccgagcca gttctgctgg aggtgaccag
     3121 agcagccccc atctatgaac tggtcaccaa caaccagaca cagaggctct tgctggaggc
     3181 caccatgagc tccctctggt gctccgggac cggagatgtc atcgaggact ggtgtcgatg
     3241 tgaccccacc gctttcggaa ctgatggact ccctgcctgt gcgcctctcc cacagcccgt
     3301 gctcagactc tccacggttc atgagcccag cagcaccctc gtggtcctgg aatgggaaca
     3361 ctcagagcct ccaatcgggg tgcagattgt agattacctc atccgtcaag aaaaggtcac
     3421 tgacaggatg gaccactcca aggtggagac agaaacggtg ctgagctttg ttgacgacat
     3481 catctccgga gcgaagtctc cttgtgcgat gccctctcag gtcccggaca agcagctcac
     3541 caccatctct ctgatcatac aatgcctgga acctgacacc atctacatgt tcaccctgtg
     3601 gggagtggac aacacaggac gacgctccag gccaagtgac gtgatcgtga agaccccttg
     3661 cccagtggtg gatgatgtca aagcccaaga aatagcagac aagatctaca atctcttcaa
     3721 tggctatacc agtgggaagg agcagcagac cgcctacaac accctcctgg atctgggttc
     3781 ccccacgctc catcgagtcc tctaccacta taaccagcat tacgagagtt ttggagaatt
     3841 cacctggcgg tgtgaggatg aattaggccc caggaaagct ggcctcatcc tttctcagct
     3901 tggggatctc agcaattggt gcaatggact ccttcaggaa cccaagataa gcttgcgacg
     3961 cagctccctt aagtacctgg gctgccgcta cagcgagatc aagccctacg gacttgactg
     4021 gtcagagctt agccgggacc ttaggaagac gtgtgaggag cagaccctga gcatccctta
     4081 caacgattat ggggacagca aagacatcta gcgccatgat gccagagagc agctgccaaa
     4141 aggaagcagg agagaggagg ggaaatgtct gggttggtgt gtggattttt aatgttttta
     4201 agggaacgtt taaacctcca caggcaacat ctaaactagc gagaaggtga tccttgcttc
     4261 ctgcagaact tctcgggtgt catgttctcc atctgtgtgg tcagtaagcc tgctagccag
     4321 ggcttcctaa atttcttctt agggaattac tttggggctt gttttgcggt taatttgttt
     4381 tgttcatttt ttgtccaaga ggttcatcaa aatgctcggg ttctgccatg cttctcatga
     4441 aagggccatt aggttggtgc accctgtgct cactgagttc ctatgtccct tgcacctggg
     4501 gacagagatg aggccagaaa gttgtagagt ggcctcagac cccagcctca gatgtcctag
     4561 ggaagctctc acactaagac cctaagctct gctcacagag aacaacagca agaaaactgg
     4621 gaaggtggcc cctgtgtagg tctcatggtt tccgcccccg gccttccgat tgctatcttc
     4681 acactgcaga ggtgaacttc gcctccatta tgggccccgg tcgacctcct ggattttcaa
     4741 gggaatttta agggaattaa atctccttct ggaagaactc tgccttctcc tctgaacaat
     4801 atatctttaa gaggcaataa aatgctacct gtctaatgcc cctgcagagc agtctacctg
     4861 ggagtctggt tagcagtcca tgttctcgaa aaaaaaaaaa tgtagtttct tcttttaaaa
     4921 agctcctgta cctccagggt gaacttctgc agaccagtag tgcatgtcgc atgcccggat
     4981 tctctgtggt gtctgcgccg cttaccttgc acagatccgt cccggctgat gtccgctctg
     5041 gtcaggacgg gtcaaggcct ccatgtcagt gttttagtga actcaagtta ttacccatca
     5101 caaaacactt ccgtccattc tcccctttgc caaatttgct tagttatgtt gctagttttg
     5161 caaatcattt ctctgggtga ggattccatt ttcacccccc atctagttgc caggagcagc
     5221 agaggttctg tgtaggtgag ctcccctgac cacaggtaag ggccaggcca ctgcttctgc
     5281 cccgctcccc gagcaatggc actggcacaa gcgggggcct ggccaacggg aagtccagcc
     5341 tctcagaaag agctctgcag ggccctgtgg accagcaatg gccttaattg tcctcacaca
     5401 cctcagaggc ctgaacacac acgttcagcc accctgcctt tgaccagggc tcctcatttg
     5461 gaaacacaag agaaaggtca ggaaggagat gcagaagcta taaggcctgt tgtcattgag
     5521 ccgtattgaa ttttttctaa gtggttagaa tgacagagct tgtttattga gtgcttactg
     5581 tgtgccagac gctgctctaa gcactttacg taacgctgaa ttctagcaac agctcgtttc
     5641 ttacctacct gaaccaccat ttgaattcag gctgtcggac tccagagcac aggattttaa
     5701 cccctcgccc tcctcagctc tgctttccat gttgcctgga cgcgcagctc tccctggccc
     5761 ctgcctccat ggcacagata tgcctgcagt gcgttgcagt gggaggaggg cacagtgcat
     5821 cctaaccctg cagccggggt gtcctttggg accacggatc tgcagcacaa gccttctccc
     5881 cgccagtgcc tgagagtgag cctgtggcag ggctgcaagc acaggtgacc tcacgcccct
     5941 ctctgcatct ttctgcagaa agatggaaag acagtatatc gactctggaa tgcagccccc
     6001 tcagttccag agcaaaggct ggcagaaaac tgagacccac ctggggtcaa tgccgggcgg
     6061 tgggtgaaat gcctcggaag ccagtgtctc accttgaccg aagaggaagg ggtacaggag
     6121 gcagcagtgg gaccccagcc agtggggcgg ggccttggtg agagctggtt ttgccgctgc
     6181 tgctccttta ttcaagtctg cacagaaagc tggatctgca cagcagagga ccaggacctt
     6241 gggccagaga ggggggccgg ggagtggcac cagggacacc gttccctgtc cctccttctg
     6301 tgttattaaa ataaagcacg ctcacgcttt ccctccctcc tgccgtctcc ccccaggtcc
     6361 atcctcatct ttgtctgctt ctcctgcctg atacccttcc tccttagccc cgtccttctc
     6421 cctccgtgac cctctccctc cttcagtgtg ccctgtgccc tccacacata cacacagcac
     6481 acactctaca cagtatatac acacactacc cacactgtac acactcggca gagagtatat
     6541 acacatacta cacaccccag acacatgcac acgctacaca cgcaacacac acacatgtgc
     6601 acacactaca cgctctacaa actctgcaca gtgtatacac atactacacg cacacaacac
     6661 acacgctaca cactccacac acagaatatg cacatactac atgcacagta tacacactac
     6721 acacacacac tatagactat acacattatt tacacactac acaaatacag actataggca
     6781 cacacactat acacatacag actgtatgca cacaccctct gcgtatactg tacacactac
     6841 acataggcac acacactacg tactacacgc agccacagag gtacacagac acacactcta
     6901 catccacagt gtacacacac aacacacact acatccacag tgtacacaca cacacagtct
     6961 acacacacac tacacacaca catgcacgct gtacacacaa cctctatgcc tgggtcccac
     7021 ctactttcga gttaaaaata aggcccatat gaatggagta ggagagggtg ctcgggcccc
     7081 ctgaggattt cactcgggga ttttgcccga ggaaggcaag ctcgctcaca ccctgacgac
     7141 actgcccaca gtttgactgc aggaacccat tctgactaga agggtgacgg acggggccac
     7201 tattaaacct cgactttcca agctgccaaa caggtcttaa gggagttgct tatacccacc
     7261 aacactctgc cagccctggg atcccacgag gccactggtg tctcctcctg agtggacatg
     7321 gcccactgta atggcacgag ccccttaacg gagtgtgcgg ctgtcttccg tggagtttgg
     7381 tccgtgcgtt actttcagtt aatcgcactt cttgatattt gaaaatgttc tattaaaaaa
     7441 ctgagtgtga aaaaaaacca ctttactact atagaaggaa gggagagtat agtgtgacca
     7501 acttcaggta tagcagtatt gtttaaaaga gaatcggtgt acgattatac aaatggaata
     7561 atcaactaaa taataaacaa agctgtcagt aagtgt
//
LOCUS       XM_032604868            7038 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus astrotactin 1 (ASTN1), transcript variant
            X3, mRNA.
ACCESSION   XM_032604868
VERSION     XM_032604868.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7038
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7038
                     /gene="ASTN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, and 93%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116739929"
     CDS             227..3937
                     /gene="ASTN1"
                     /codon_start=1
                     /product="astrotactin-1 isoform X3"
                     /protein_id="XP_032460759.1"
                     /db_xref="GeneID:116739929"
                     /translation="MALARLCALLACCWGPAAVLATAAGDVDPSKELECKLKSITVSA
                     LPFLRENDLSIMHSPSASEPKLLFSVRNDFPGEMVVVDDLENTELPYFVLEISGNTED
                     IPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQRESAEEELRILHISVMGGM
                     IALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRESLR
                     NARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQ
                     GCNEKAGMDLTPGSDNAKLSLMNKYKDNIIATSPVDSNHQQATLLSHTSSSQRKRINN
                     KARAGSAFLNPEGDSSTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISIT
                     SCVIGLVCSSHVSCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVVLFS
                     QQNSSGPWAMDLCARRLLDPCEHQCDPETGECLCYEGYMKDPVHKHLCIRNEWGTNQG
                     PWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVIPPAELAVNPSAKCK
                     TDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFRCISDRKLD
                     STGCMCPSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPDDPAVYNILM
                     FCGCIEDYKLGVDGRSCQLITETCPEGGDCGESRELPMNQTLFGEMFFGYNNHSKEVA
                     AGQVLKGTFRQNNFARGLDQQLPDGLVVATVPLENQCLEEISEPTPDPDFLTGMVNFS
                     EVSGYPVLQHWKVRSVMYHIKLKQVTVSQALSNALHSLDGATSRGDFVALLDQFGNHY
                     IQEAIYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERERDPKVLTFPEYI
                     ASLSESGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPDTPAEPVLLEVTRAAPIYEL
                     VTNNQTQRLLLEATMSSLWCSGTGDVIEDWCRCDPTAFGTDGLPACAPLPQPVLRLST
                     VHEPSSTLVVLEWEHSEPPIGVQIVDYLIRQEKVTDRMDHSKVETETVLSFVDDIISG
                     AKSPCAMPSQVPDKQLTTISLIIQCLEPDTIYMFTLWGVDNTGRRSRPSDVIVKTPCP
                     VVDDVKAQEIADKIYNLFNGYTSGKEQQTAYNTLLDLGSPTLHRVLYHYNQHYESFGE
                     FTWRCEDELGPSLWTDTVNIYILQMRKVGNLK"
     misc_feature    509..2149
                     /gene="ASTN1"
                     /note="Astrotactin 1/2 N-terminal; Region: ASTN_1_2_N;
                     pfam19441"
                     /db_xref="CDD:437273"
     misc_feature    2180..2323
                     /gene="ASTN1"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    2636..3199
                     /gene="ASTN1"
                     /note="membrane-attack complex / perforin; Region: MACPF;
                     smart00457"
                     /db_xref="CDD:214671"
     misc_feature    2996..3628
                     /gene="ASTN1"
                     /note="ASTN1/2 EGF-like and Fn(III) domains; Region:
                     ASTN1_2_EGF_Fn; pfam19743"
                     /db_xref="CDD:437575"
     misc_feature    3659..>3871
                     /gene="ASTN1"
                     /note="Annexin-like domain; Region: Annexin_like;
                     pfam18411"
                     /db_xref="CDD:465756"
ORIGIN      
        1 cttccccaga taagcagctc cgggaaacaa agagcgcggg ctctccaggc atcagcgctt
       61 aagccctgca ccaggctagc ggcgtctcat tccggggacc agagctttcc cggctccaca
      121 tctcctcccc aacgtccccc gcctcccgcg ctcgctcgct cgctccctcc cgctcgctgc
      181 ctcccccacc ttcgcggcgc tgggaggaag gcggccgggg ctcaagatgg ctttagccag
      241 gctctgcgcc ctgctcgcct gctgctgggg gccggcggcg gtgctggcca cggccgcggg
      301 cgacgtggat ccttccaagg agctggagtg caagctgaag agcatcacgg tgtcggcgct
      361 gcctttcctg cgcgagaacg acctgagtat catgcacagc ccctcggcct ccgagcccaa
      421 gctcctcttc tcggtacgca acgacttccc gggagaaatg gtcgtggtgg acgacctgga
      481 gaacacggag ctgccctact tcgtgctgga gatctcaggg aacacggagg acatccctct
      541 ggtgcgctgg aggcagcagt ggctggagaa tggcacttta ctttttcaca tccaccacca
      601 agacggtgcc ccaagcctcc ctggacaaga cccaaccgaa gaaccccagc gtgagtcggc
      661 agaagaggag ctgagaatcc tccacatctc agtcatgggt ggcatgatag cgctgctgct
      721 gtccatcttg tgcctcgtga tgatcctgta cactcgccgg cgctggtgca agcgccgccg
      781 ggtcccccag ccccagaaga gtgccagcgc tgaggctgcc aatgagattc actacattcc
      841 ttctgtgctg atcggcgggc acgggcggga gagtctgcgc aatgcccgcg tgcagggcca
      901 caactccagc ggcaccctga gcatccggga gacacccatc ctggatggct acgagtacga
      961 catcactgac ctgcgccacc acctgcagag ggagtgcatg aacggagggg aggacttcgc
     1021 cagccaggtt acccgcaccc tcgactccct gcagggctgc aacgagaagg cagggatgga
     1081 cctcacgcca ggaagcgaca atgccaagct gtcgctgatg aacaagtata aagataacat
     1141 cattgctacc agccccgtgg actccaacca ccagcaggcc actctgcttt ctcacacctc
     1201 cagtagccag agaaagagga tcaacaacaa agcaagagct ggttccgcct tcctgaaccc
     1261 tgaaggggat tctagcacag aggcagaaaa tgacccccag ctgacctttt acactgaccc
     1321 ctcgcggagc cgaaggcgca gtagagtggg ctctccccga agtcctgtga ataagaccac
     1381 cttgacattg atcagcatca ccagctgcgt gatcggcctt gtgtgttcct ctcacgtcag
     1441 ctgccctctc gttgtcaaaa tcaccctgca cgtccccgag cacctgatcg ctgatgggag
     1501 ccgcttcatc ttgctggagg ggagccagct ggatgccagc gactggctga accctgccca
     1561 agtggttctc ttctctcagc agaactccag tgggccctgg gccatggacc tttgtgcccg
     1621 gcggctcctg gacccctgtg aacaccagtg tgaccccgaa actggggaat gcctctgcta
     1681 cgagggttac atgaaggatc cagtgcacaa gcatctttgc attcggaatg aatggggaac
     1741 caaccaaggg ccttggcctt atacaatatt tcagcgaggc tttgacctgg ttttgggaga
     1801 acaaccttct gataaaatat tcagattcac ctacaccctc ggggagggca tgtggttacc
     1861 cctcagcaag agctttgtga ttccaccagc ggaactggcc gtcaacccct cagcaaagtg
     1921 taagacagac atgacagtga tggaggatgc tgtggaggtc agagaggagc tgatgacctc
     1981 atcctccttt gacagcctgg aggtcctctt agattccttt ggaccagtcc gtgattgcag
     2041 caaggataat gggggctgca gtaagaactt ccgttgcatc tcagatcgca agctggactc
     2101 cactggttgc atgtgcccat ccggactcag ccccatgaag gacagctctg gttgctatga
     2161 ccgccacatc ggggtggact gctctgatgg cttcaacggt ggctgtgagc agctgtgtct
     2221 gcagcagatg gcgcccttcc cggatgaccc cgccgtgtac aacatcctca tgttctgcgg
     2281 gtgcatcgag gattacaagc ttggtgtaga tggacgctct tgccagctca tcacagagac
     2341 ctgtccagag ggaggtgact gtggggaaag cagagagctc cccatgaacc agaccctctt
     2401 tggggagatg ttctttggtt acaacaacca ttccaaggaa gtggctgctg gacaggtgct
     2461 gaaaggaaca ttcaggcaaa acaactttgc tcgaggttta gaccagcaac tgccagatgg
     2521 tcttgtggtg gccactgtcc ccctggagaa tcagtgcctg gaggaaatct cagaaccaac
     2581 cccggaccca gacttcttga ctgggatggt gaacttcagt gaggtgtccg gataccccgt
     2641 cctgcagcac tggaaggtcc gctctgtgat gtaccacatc aaactcaaac aagtgaccgt
     2701 ctctcaggcc ctcagcaatg ctctccactc cctagacggg gctacatctc gtggggattt
     2761 tgtagccttg ttggaccagt ttggcaacca ttacatccag gaagctatct acggctttga
     2821 ggaatcctgc tctatctggt acccaaacaa gcaggtccag cggcgactct ggctggaata
     2881 cgaagacatc agcaaaggca actccccatc cgacgagtca gaggagcggg aaagagaccc
     2941 caaggtgctg acattcccag aatacattgc cagcttgtca gagtctggca ccaagcgcat
     3001 ggcggctgga gtccgcatgg agtgccagag caagggacgg tgcccctcgt cctgccccct
     3061 gtgtcatgtg acatccagcc ctgacacccc tgccgagcca gttctgctgg aggtgaccag
     3121 agcagccccc atctatgaac tggtcaccaa caaccagaca cagaggctct tgctggaggc
     3181 caccatgagc tccctctggt gctccgggac cggagatgtc atcgaggact ggtgtcgatg
     3241 tgaccccacc gctttcggaa ctgatggact ccctgcctgt gcgcctctcc cacagcccgt
     3301 gctcagactc tccacggttc atgagcccag cagcaccctc gtggtcctgg aatgggaaca
     3361 ctcagagcct ccaatcgggg tgcagattgt agattacctc atccgtcaag aaaaggtcac
     3421 tgacaggatg gaccactcca aggtggagac agaaacggtg ctgagctttg ttgacgacat
     3481 catctccgga gcgaagtctc cttgtgcgat gccctctcag gtcccggaca agcagctcac
     3541 caccatctct ctgatcatac aatgcctgga acctgacacc atctacatgt tcaccctgtg
     3601 gggagtggac aacacaggac gacgctccag gccaagtgac gtgatcgtga agaccccttg
     3661 cccagtggtg gatgatgtca aagcccaaga aatagcagac aagatctaca atctcttcaa
     3721 tggctatacc agtgggaagg agcagcagac cgcctacaac accctcctgg atctgggttc
     3781 ccccacgctc catcgagtcc tctaccacta taaccagcat tacgagagtt ttggagaatt
     3841 cacctggcgg tgtgaggatg aattaggccc cagcttgtgg acagacactg ttaatatcta
     3901 cattctacag atgaggaaag ttggaaatct taagtaactt tcccaagacc gtaaggcagg
     3961 taagtatggg agccagagcg taccctttgt actgctctcc gatgctgcag tgtggatttg
     4021 gaacctatgt gacatcaaca gggtgattca actaaaccaa cagcaaaact tgactgaaca
     4081 cgttttttgt gtctgttgtt tctctttgtt ttgttttgct gttgtggggg tcggggtttc
     4141 cttgtatgca gcagaaccga caaacgagac tcggcgatct tttacatgtc cacgtcttcc
     4201 tgctccttcc tggtgttcag cacagcgtca gtccctgctg tggagaaggc gtggctaggg
     4261 agctgggcct atgcactttc aaggattctt gtgacttgag tttattggca tgcatggaaa
     4321 tggaattcct cccacgtctg atctcactga cttttgtgtc tctactggcg taaaagtcat
     4381 tcccgccctc cagcctggtc gtattctcag gcagaccatt ccaactacgc agatgtctct
     4441 acagttctag aacggaagcg ttcaaccaca cccatggatc taccgtgtct acaccgcggt
     4501 aacccctgac caaggtcagt ctaaagcact tcaggtctct ggaccttcct cactctcggg
     4561 tatcagacag gggaagatgt tttgatcctc accctgtagc ttccgtgtcc cttgacgact
     4621 aggaaggaat ctgaagagac ccacagtaga ggtgttggcg atggagctga ctggtgtggg
     4681 gcaaggagag gggaacataa agaaagggca tttggctgcc ccagcaatac cagcaaacac
     4741 tcaaaggaga gggtgtagcc cagaacttaa caaagtccca ctgggtttga gcagccgcgg
     4801 gaatgtctga gtggaacttc atcctcccca cagagcctgg gctgaggcca cgagcaagga
     4861 gtgccctagc tctcaggact cctcaggacg aagacaggca cggaaaagac aagctgacct
     4921 cccaggtgtg ggttttcctc tcacccgggc acagaatggg gacctcccag aagaaatttg
     4981 gaaaactcca caaaaagcca agagagacgt gatctacaaa ttattgtttt ttccccccaa
     5041 aattctgagc tggacattct tcagggagtg agcgggcact ttgaaagttc ttccccgcaa
     5101 aagttcactt ctgtcttttc ctttgctgcc tgcccttctc cagcgtggta ttctcactgt
     5161 gggcatggac ctgggatctc aaaaccctca cggttggatc aaacagaaga cagagccgtg
     5221 gtgtgtgtta gccacgggaa tgggcagcag tgggttgaag aggcgagtct ggaaagacgc
     5281 tggcgccggg agagataaga ccacaaggac agtgaggggg tgggactggc atgacttgaa
     5341 gagctggtgt tggggagcac acaagagcct gaggtcaagg cggggtctgt gtctgaagcc
     5401 cagcgcttag atgaggcttc acgagccagg agattcataa aatcctgata ataatgaggt
     5461 attgtggaca actgctggcc aagttgttta tgaggaagga ggcctggaac tcccttctag
     5521 agcctggaaa agatattgcc agaatctgat cttgccttca cctccaggtc ttgccagact
     5581 caacccttct ccagattcaa ctctttcctg tccgatttcc tcttccccga agccttaact
     5641 agcttagagg aaactcttgt ctgagctata gcatgaatgg aaactggaaa caagcggtga
     5701 gattttaagt acacctgaaa tggtaatagg aaggtactgg gcacttcaat ggaaaagaag
     5761 gaaggaaatt ctttcactaa taaatattta ttattaataa gtatttattg aactccagcc
     5821 atgctatggg aaagaaactc acacggaaca ctttgtgtac caagtgcttt caagggttac
     5881 taaggttacc ctattgagtg ctcataatag ccctgcaaat gtaaactcat ccccgcttta
     5941 taaacgggcc ctaaaagact catctgccca acgtctcctt gaactgcgag tccacactag
     6001 gtcttcagtc tgaggtctgt actctccgaa tgatcaagat gaatacataa atgcctacga
     6061 tttctaccaa aatttacttt gagtcagtca agtcctgatg ccttggtacc tccaggaatg
     6121 tcatttacat ctagaggaaa ccctgttact ctccccaagc cacgatcctt gcctggggcc
     6181 ctctttactt cgtgaaggta aattgtctaa aactacaatt agtatgggtg gatccagttt
     6241 gcttattcgt gagtatgctg cccaggcaga gccccaggac atgctctggc atcaacacga
     6301 ccctctaaaa ttgtgaataa attacatttc ttgatgacat agtttaaaca atttttttcc
     6361 tccccttaat acttggaatc agggtcacat tctaactatt taatctgggg cctcgaactg
     6421 gcacatagca tggctttaaa tgaaattata tttaaaacat agccaaaggt tcatagaaca
     6481 cttaattgca tgtgagcatg tgagtgtgtg tatatgtgtg tgtgtgtgtg tgtgtgtgtg
     6541 tgtgtgtgtg tgagagagag agagagagag agagagagag agagagagag gaatacccat
     6601 tagaataatt cacatcccag gctaaaagaa actcaaaagc cagccagtca ccatccccac
     6661 tactctcttc ctcctgtacc agggatactt ctattgatct cgggtaataa tacttataat
     6721 caccatttta aaagtgcctc catggggact tgcctggtgg cacagtggtt aagaatccgc
     6781 ctgccaatgc aggggacacg ggttcgagcc ctggtccagg aagatcccat atgccgcgga
     6841 gcaactaagc ccatgtgcca caactactga gcctgcgctc tagggcccgc atgccacaac
     6901 tactgaagcc cacacgccta gagcccatgc tccacagcaa gagaagccac cgcagtgaga
     6961 agcccgcata ccgcaacgaa gagtattccc cgctcgccgc aactagagaa agcccgtgtg
     7021 cagcaacaaa gacccaac
//
LOCUS       XM_032604882            1061 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chymotrypsin-like elastase family member
            3B (LOC116739941), mRNA.
ACCESSION   XM_032604882
VERSION     XM_032604882.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1061
                     /gene="LOC116739941"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 41 Proteins, and 43%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739941"
     CDS             14..823
                     /gene="LOC116739941"
                     /codon_start=1
                     /product="chymotrypsin-like elastase family member 3B"
                     /protein_id="XP_032460773.1"
                     /db_xref="GeneID:116739941"
                     /translation="MLRLLSFLLFVALASGFGQTSYSLSSRVVNGEDAVPYSWPWQVS
                     LQYKKNGTFYHTCGGSLIAPDWVMTAGHCISSSLTYQVVLGEYDRSEKEGFEQVIPVN
                     AGDLFVHPLWNSKCVSCGNDIALIKLSHSAQLGNKVQLASLPPAGDILPNETPCYISG
                     WGRLYTSGPLPDKLQQALLPVVDYEHCSKLDWWGRALKKTMVCAGGDIRSGCNGDSGG
                     PLNCPAADGSFQVHGVTSFVSAFGCNTVKKPTVFTRVSAFNDWIEETIASH"
     misc_feature    95..808
                     /gene="LOC116739941"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...; Region:
                     Tryp_SPc; cd00190"
                     /db_xref="CDD:238113"
     misc_feature    95..97
                     /gene="LOC116739941"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     misc_feature    order(227..229,377..379,659..661)
                     /gene="LOC116739941"
                     /note="active site"
                     /db_xref="CDD:238113"
     misc_feature    order(641..643,719..721,725..727)
                     /gene="LOC116739941"
                     /note="substrate binding sites [chemical binding]; other
                     site"
                     /db_xref="CDD:238113"
ORIGIN      
        1 ctcaaaactc acgatgctcc ggctgctgag ttttctccta tttgtggccc ttgcctcggg
       61 ctttggccag acttcctaca gcctctcctc ccgcgttgtc aatggtgagg atgcggtccc
      121 ctacagctgg ccctggcagg tctccctgca gtataaaaag aacgggacct tctaccacac
      181 ttgtggaggc agcctgatcg cccctgactg ggtcatgaca gcgggccact gcatctcgag
      241 ctccctgacc taccaggtgg tgttgggcga gtatgaccgc tctgagaaag agggcttcga
      301 acaggtgatc cccgtcaatg ctggggacct cttcgtgcac ccactctgga actccaaatg
      361 cgtgtcctgt ggcaatgaca tcgccctcat caagctctcg cacagcgccc agctgggaaa
      421 caaggtccaa ctcgccagcc tccctcccgc cggcgacatc ctgcccaacg agacaccctg
      481 ctacatcagc ggctggggcc gtctctacac cagtggaccg ctcccggaca agctgcagca
      541 ggccctgctg cccgtggtag actacgagca ctgctccaag ttggactggt ggggcagggc
      601 cttgaagaag accatggtgt gcgccggcgg ggacatccgc tctgggtgca atggtgactc
      661 tggaggaccc ctcaactgcc cggcagcaga tggctccttt caggtccacg gtgtgaccag
      721 cttcgtttct gcctttggct gcaacaccgt caagaagccc acagtgttca cgcgagtctc
      781 ggccttcaat gactggattg aggagaccat tgcaagccac tagaaccaag gccggggtgg
      841 cagtgcccat tcactctctt tgtgaaaaat aaagatctct cagaaaattc caaattgagt
      901 ctttcttcct tctttgattc acctcttccc ctctggcctg ttcctaaaat cttagatgtg
      961 atatgtagag atgagaagag aaccaaccct ctcatatgag aatgaggaaa aaatgaggcc
     1021 cagagagaag ggagttgctg tcaagtgacc gaccatcaca g
//
LOCUS       XR_004345744            3471 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116739943
            (LOC116739943), ncRNA.
ACCESSION   XR_004345744
VERSION     XR_004345744.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3471
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3471
                     /gene="LOC116739943"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 mRNAs, 5 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739943"
     ncRNA           1..3471
                     /ncRNA_class="lncRNA"
                     /gene="LOC116739943"
                     /product="uncharacterized LOC116739943"
                     /db_xref="GeneID:116739943"
ORIGIN      
        1 ttttggatag gccagttgga aggagaacgg acggccaagt cccttccctt cagaaataaa
       61 agtgaattgg gaagtctgcc ttggttcgca tctctgcacc ttctcttaca ggctgtgcta
      121 tttaacctgt gtgccttgac tcaaaccagc ttagtaagaa ttctaaattt cagttcttaa
      181 ccatggcaac tggaaagtct ggaagagaca cacagggcta agattccgcc tcctacgcac
      241 acggggtctc cccttggaca gactgtcaaa gctccacggg cacatgctca ctatctgggg
      301 ggtggggggt tctctttggg tacacggaga cacctaacgg acttgcgccc tctgtccatc
      361 tggagtgact ccacgggaag ccatacagac cactgacagc caacagcagc cagccagcca
      421 gccctcttat tttggtttct ttcctctggg tggggcgctg actcagctgc cggcagtctc
      481 caggagtgtc tcgattcctg cttcatcctc tttccatttt gttgggcaaa ctgcggctca
      541 gaaagacaaa ggccttcccc gcagcggaaa acctcctagg ccgtgcccaa agctccgcac
      601 gctcgggaga actggggact gagggaggcc aagagaccag aacgggttaa gatcatgaag
      661 ctgcggagca ccgccaaggt ctagagagac ctggcgcctc gaacccggtt ccccctccgc
      721 tcccagctgc cgggcggggc gcgacttccg gttccggcgg cgggctacaa agcttggcgc
      781 ggggaggctg gtttttcgtt cccgcacccg gcagcggggt ttcgcgtctc atcgccagcc
      841 gccccgtctc cccgccctcg gaggggcacc tgcgcaggag tctgagaaat ccttttccag
      901 agttctagaa tggagactga agggtaccca gagatacaaa gaaatagaga aatccagaat
      961 gatgaagtaa ggtcatcacc aaatgagagg atggctgagg agccagaagt tgtcctgata
     1021 gcacttcccc aggtccaggt tccaccagag agcctcgatg aagactctga agaagacctt
     1081 gagactgtgc cccgagggag tcctctcaac cctgcagcct ccaggcagag gttccggcag
     1141 ttctgctatg aggatgcagc tggccccagg gatgtcctca gacatctcca ggagcttgct
     1201 ggacagtggc tgagacctga tatttacaca aaggagcaga ttgtggaaat actggtgcag
     1261 gagcaattcc aggccgtcct ccctgaggat ctcagagctc gggcacagag acgtcagcct
     1321 ggggtcagag tcactggcta aatcctactg cttgcttctt gcccagccta catgtgagaa
     1381 gtaaccaaag gctctctttg ttacaagatc caactgcagt catgggaaat ctgaacttcg
     1441 gttttctttg agcttgcatt tgactagctg taataagaat taaccaaaac ctttttttgg
     1501 ctgaagcagc tctatttcct gggactgtga actccagaat gagtttccct gccctcttgt
     1561 aaggacagtc agcccgctgc ttgtttttgc tctgctgaat gcctcctttt ttgcactttg
     1621 tgacatgctt taatatatta aagcatgttt tatgtatgca aagaggtgat ggcttcaact
     1681 ttaatattct tgattcttgt tgtggtggca tgaatggaag cttctgtaac cccaccagta
     1741 actcatttgg gatgtccttg aaatattaaa gctctgtttt tagtaaaaat gtcctttgat
     1801 gatttaccag tttagctctt agtagtcagc atttgagaaa ggtgagataa ttatcaggag
     1861 tagatgtgag ctcaagataa gaattgtgtg gcattcgctg agctgggaaa taggaacagg
     1921 cctggccttt gttttcaatg tcagaattta aattggacaa aactgagagg ggtaaaacag
     1981 ggtcataaga ggtaactctc aggcagggct gtttgatttg ctctttctcc attttcatca
     2041 cctttgttct acagctcgtc ttcctgtaag aggactcact caaccatctg acaattctgc
     2101 tcttcccgaa acagaggcca tcctggcttt gtgtgtgtgg aggcctgtac tttggttgac
     2161 agctgagaca gaacagtatc tctggttgtg acaggcagag agggaacagc agctgcttcc
     2221 ccagcatgac ccagtcttga ggaacctttc tgtctctgcg gcctggcttt gggatttgta
     2281 gatccgttcc tgtaacacac ttggtaccaa ttcggaaact aatcttttgg gataggggct
     2341 gcttaactcc atgctggaac tcatgttgat tctgctgatg tttgtttagt acttcatgtg
     2401 cctttgggac tcttctagat gctagcatat aaatactata aaaccaagtt tgaaggaaat
     2461 gtatagtttt tgaggagagg aagaagctat acaaatatat cattagacat gctagagtaa
     2521 agctagtttt ccttttggca tctggttttg agagagcact aaaaaacatg atgacctaga
     2581 ggggtgggat agggaggatg ggagagaggc tccagaggga gaggatatgg ggatgtgtgt
     2641 gtacgcatat ggctgattcg ctttgttgta caacagaaac taacacagta ttgtgaagca
     2701 gttatactcc aataaaaatc tattgaaaaa aaatgttaaa agcaaagagg aaatagctaa
     2761 gggaagtggc gttttaattg aactttagga gtaggagatc actggacaga aggtgcacct
     2821 tttgcaaagt aaaatttaac attggcaaag gaggaactct aactgttgta tcttcagtac
     2881 ttcagtttgt tccaaacatt ctgaaggtat ttcctttagt ctgcaggcat taggaactcc
     2941 tggtgttaag gaatttcctg acctgctcca gtttctcagc tgctttgatg gcctagaatt
     3001 tagcatgcaa gtaaaggacc agagtttaca ggtggaccaa aaagttttca ctttgcgggt
     3061 tttattacaa aacagctgag gtttcctgga ttgagtgcac ttagcactgg tttttctcaa
     3121 ccttggcact ttggggccag ataattccct tttgtgggga cttgtcctat ggattatagg
     3181 accttcagca gcatctctat cctctgctca ctagttaaaa gtaacacccc cgagatgtga
     3241 caaccaaaat gtcttcaaac attgccaaat gttccttggg ggcaagtttg cccctggttg
     3301 aaaaccactg gttttaagga ggagagttca tccagacatg ccacagatta ccctcaggtc
     3361 cacggtctct taaggttaat gttgaattga gaaagctatt ggaaaagttg tatgaattgg
     3421 gctttatggt tccttttttc ttttttaatt aaaaaattct tattcaatgt c
//
LOCUS       XM_032604905            4462 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TAL bHLH transcription factor 1,
            erythroid differentiation factor (TAL1), transcript variant X1,
            mRNA.
ACCESSION   XM_032604905
VERSION     XM_032604905.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4462
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4462
                     /gene="TAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739946"
     CDS             293..1279
                     /gene="TAL1"
                     /codon_start=1
                     /product="T-cell acute lymphocytic leukemia protein 1
                     isoform X1"
                     /protein_id="XP_032460796.1"
                     /db_xref="GeneID:116739946"
                     /translation="MTERPPSEAARSDPPLDGLDAAEARMAPPHLVLLNGVAKETSRA
                     APAEPPVIELGARGGGPGGGPAGGGGAARDLKGRDAAAPEARHRVPTTELCRPPGPAP
                     ASAPAELPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFAT
                     NNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDK
                     KLSKNEILRLAMKYINFLAKLLNDQEEEGSQRAKPGKDPAVGAGGGGGGGGGAAPPDE
                     LLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR"
     misc_feature    836..1030
                     /gene="TAL1"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     T-cell acute lymphocytic leukemia protein 1 (TAL-1) and
                     similar proteins; Region: bHLH_TS_TAL1; cd19706"
                     /db_xref="CDD:381549"
     misc_feature    order(848..850,860..862,866..874,878..880,893..895,
                     947..949,953..958)
                     /gene="TAL1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381549"
     misc_feature    order(887..892,899..904,911..913,920..922,959..961,
                     968..973,980..982,986..994,998..1003,1010..1012,
                     1019..1024)
                     /gene="TAL1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381549"
     misc_feature    order(920..922,926..934,938..940,986..988,995..1000,
                     1004..1009,1016..1021)
                     /gene="TAL1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381549"
ORIGIN      
        1 atgccaggct gcggacgact ccgcgctgtg gccacagctc cggcctgact tcggttcctg
       61 agccaacggc gtagacgagt ctgcttagaa aacaaatggc cacactgaac cagacatccc
      121 ggttggagga ccgcccagga ccgcaccgcg gcctaactgc cggtctctca gtgagagagg
      181 gggaaagcaa agaccccttc cacaacctgg acctcggctc ctgcccctct cccgccggag
      241 gaggagtgga gatcctatgc agaggggccg ctctctctaa atatgcccca ggatgacgga
      301 gcgtccgccg agcgaggcgg cacgcagtga ccccccgcta gacggactgg acgcggccga
      361 ggcccgcatg gcccccccgc acctggtcct gctgaacggc gtcgccaagg agacgagccg
      421 cgcggccccg gcggagcccc cggtcatcga gctgggcgcg cgcggcggcg gcccgggggg
      481 cggccccgcc ggtgggggcg gcgccgcgcg agacttaaag ggccgcgacg cggcggctcc
      541 cgaagcgcgc catcgggtac ccaccaccga gctgtgcaga cctcctgggc ccgcgcccgc
      601 ctcggccccc gcagagctgc ccggcgacgg ccgcatggtg cagttgagcc cgcccgcgct
      661 ggcggccccc gccgcccccg gccgcgcgct gctctacagc ctcagccagc cgctggcttc
      721 tctcggcagt gggttctttg gggagccaga tgccttccct atgtttgcca ccaacaaccg
      781 agtgaagagg agaccctccc cttatgagat ggagattact gatggtcccc acaccaaagt
      841 cgtacggcgc atcttcacca acagccggga gcgatggcgg cagcagaacg taaacggggc
      901 cttcgctgag ctccgcaagc tgatccccac gcatcccccg gacaagaagc tcagcaagaa
      961 tgagatcctc cgcctggcca tgaagtacat caacttcctg gccaagctgc tcaatgacca
     1021 ggaggaggag ggcagccagc gggccaaacc cggcaaggac cctgcggtgg gggctggtgg
     1081 agggggtggt ggcggagggg gcgcagcacc tccagatgaa ctcctgcagg acgtgctgtc
     1141 cccgaactcc agctgtggta gctccctgga cggggcagcc agcccggaca gctacacgga
     1201 agagccggca cccaagcaca cggcccgcag cctccatcct gccatgctgc ccgccgcgga
     1261 tggagccggc cctcggtgat gggtctgggg ccacccagga ccagccggga gggtgccctc
     1321 aggccacggg caccatgggc tttagggcag gtggggtgag gattgggcag ctctgaagca
     1381 gggcatggac ttttgatgag ctttccttga tgtctgagct gtgggaagtc ccagctgcct
     1441 ctggggctgg ctttcctgtt tcctgcctca gtaggagaac agaaaaatgg agcaaagtgg
     1501 taggtacttt ttatgaagat ggcacggtct tccccctttt ccatatccct aagacttctc
     1561 aagtaagagg ctggcgtggc gttgcttttg gcctggcgca cgggagccct gtcttagctg
     1621 agacctgggg ttgtcagctc tctcctgtgt ccggcagcct ctgcctcgcc tttagcccct
     1681 cccaagctcg ctggggtggc ttttgtggcc acactgtcca aaaatacagg tacccaatag
     1741 ctgcccattt cttgagcccc atcttcaccc aggcccctgt tggtccgtcc agcttgccag
     1801 tgctgcagag agtctcaagc ctcgaggtgc cttcttcagg gcctggctga agaagacagc
     1861 cagtggacag cctgctctcg actagctggg ccagagggtc agaaacccag aagcccttac
     1921 tccttgccct ggggatcgaa gctctgcttt ctccccactg agacttgcct tcctcgtcct
     1981 tgtggctgtg gggactgagt ctgcggctgt gagcgtgccc tgtgagcttt gttcgaaggc
     2041 agacaaagga gaaatgatga gagtgaaatt gagcaagagc tatttggggc aagtgggctt
     2101 caaatcgcgg tggtgcctca gagctacctg cctgcgtcct cagcgacacc gctgttcatg
     2161 cagggagcag atgccaatgt gctgatcggt gtgtgttggt gctgagagta gacgtgtggc
     2221 cccatctcgc gttctcctag ctcctcagag gggcctccct gctgcaggat gtctgtttgc
     2281 tggtggtctg gtctgggtcc tgaaactgaa tcgacaacaa actctgtcct atgaattcct
     2341 ggcatttggg attctgcttg acttcaggta tttgtgggat ctctaggtct tgatatgacc
     2401 caggatctag ccccacttct agggcctgga gagcccagtg agcgaccagg ccctggcgga
     2461 gacccaaaca catcgacatt cacttagcag aaccttcggc atccctgagc gcacaaattt
     2521 tggtcatcca gggtgtgtat gggaggctgg cgtgacacgg taggagtgct cccctccaga
     2581 agctgtacat gacatttttg taaatcaaat ccttatcttc accttttaaa gaaatactgc
     2641 cacgagtccc ttggtaaagt ggagaatcct tttgtagagt ggactgctgc cccctcattg
     2701 atctcccgtg tcgatccaga tggtgggaca tggttttctt aaggtgacgc ctgcctgtga
     2761 cccatatccc aagcccctgg aacaaactgc acacgagtcc tacatacctg tcactgtgcc
     2821 ctcaagtcac cccagccggc tctgaccagg ctctgccttt gaggtcagag gggaaacaat
     2881 gctctgactt tgccccgtcc atagcaaacg ttgaggaacc atcgctgcgg ctgtcgggaa
     2941 aggcgctcac accttatggg ctccagcctg gtggctcgcc ttcgccatgg caggaccttg
     3001 gggacagcca catgtccatg gggaatgatc cctgctctcc tccccttcct tttaagttgt
     3061 gcgaggagag gtccagtttg tgggggtggg agcaacatgg ttaacccttg tagcgctctc
     3121 tctgtcccat ttcagcgccc cccccccagt catattttga tgaacattag gattcgttcc
     3181 tttctgatac ttggaagctc ctgtgaaaaa tcccatctgt ctaaagatgg agcacctgtt
     3241 ctaggtccta aggctgtgtt tgcttccggt gggttaattt gacctgggag tgaaaagtgg
     3301 ccacggtgag cataggtgga tgggttttag gagatggatc acacgttctt tgaggaactc
     3361 cagctactgg cttcctcttc tctcagactt gcagtgtgac ctggaaaagt tctctctctg
     3421 aaagtcaatt tctcataaat acgctagctt ggcctgtctc ctagggctgt ggtgtggact
     3481 gaatggaatc gtgaaagtag aagcattttg agaccgtacg gaactctgtc ccccactatc
     3541 attcctgcaa tggggtttcc caccctgagt ccgggaccta ggcagtgggc cagtctgcct
     3601 gtctgcatag catttgggta atttaggttc taaaccactt tatcctgagt tatctaggtt
     3661 atccttatct ctccagattg acctcatttc agtctcattc caaagcaagg cacaggaggg
     3721 agactagaaa agagagatgg gaacagaggc agaatatgta aaaagtacta cagctacccg
     3781 agacaggcct gggtaggggt gggcaaagct tcgtgtcttt gttaagtact agaaaagatc
     3841 cataattttc actttccttt ccagcacctc cccccaccat actcttctcc ttcctctgcc
     3901 tcctcttcac ccatgaacat tctccatcca tgaataatat ctgtacaaaa aggaaaaaat
     3961 gtaaagaaaa catgaggagg acaaagatga ttgttaatga ctggagggaa tcacgtcttt
     4021 taagacaaat tcgttttctt ttatttgtag tggcaaacga caagatggta caacctttat
     4081 ccttttccga aagcaaaaca aagggcacag catcggtagt cagccgacaa ctgtctcggc
     4141 ctttgggggt ggtcgtgtcg tacttgtgat gtcaatggta cgtggccccc gccgaaggct
     4201 tgccccccag cccatgtaca tagcgcatcg ttcctgcggg cgggcccagc actttccgtc
     4261 aatgttgtac tgtacgtgat gcattgcgtt ggtctctgca tttttctgca gaagaggagt
     4321 aaccgctcca ggtaccttga cctttgtaca gcccagaggc caacactgtg ggcgtgtgac
     4381 tctttagcga caaaacccat gtggtgatga tgtgtgtata tatataagga tatattggga
     4441 agatttctaa ataaaagttt ta
//
LOCUS       XM_032604913            5081 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TAL bHLH transcription factor 1,
            erythroid differentiation factor (TAL1), transcript variant X2,
            mRNA.
ACCESSION   XM_032604913
VERSION     XM_032604913.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5081
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5081
                     /gene="TAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739946"
     CDS             912..1898
                     /gene="TAL1"
                     /codon_start=1
                     /product="T-cell acute lymphocytic leukemia protein 1
                     isoform X1"
                     /protein_id="XP_032460804.1"
                     /db_xref="GeneID:116739946"
                     /translation="MTERPPSEAARSDPPLDGLDAAEARMAPPHLVLLNGVAKETSRA
                     APAEPPVIELGARGGGPGGGPAGGGGAARDLKGRDAAAPEARHRVPTTELCRPPGPAP
                     ASAPAELPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFAT
                     NNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDK
                     KLSKNEILRLAMKYINFLAKLLNDQEEEGSQRAKPGKDPAVGAGGGGGGGGGAAPPDE
                     LLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR"
     misc_feature    1455..1649
                     /gene="TAL1"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     T-cell acute lymphocytic leukemia protein 1 (TAL-1) and
                     similar proteins; Region: bHLH_TS_TAL1; cd19706"
                     /db_xref="CDD:381549"
     misc_feature    order(1467..1469,1479..1481,1485..1493,1497..1499,
                     1512..1514,1566..1568,1572..1577)
                     /gene="TAL1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381549"
     misc_feature    order(1506..1511,1518..1523,1530..1532,1539..1541,
                     1578..1580,1587..1592,1599..1601,1605..1613,1617..1622,
                     1629..1631,1638..1643)
                     /gene="TAL1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381549"
     misc_feature    order(1539..1541,1545..1553,1557..1559,1605..1607,
                     1614..1619,1623..1628,1635..1640)
                     /gene="TAL1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381549"
ORIGIN      
        1 gtctgcggga gaggcccgga aaagacaatg ggcgcgttct ccaggcctcg cgcctcgggt
       61 ggggaccttc gggatcaact ccaaggaaca tttttctacc ccctccccgg gtgagcgaca
      121 ttcccgcgtg ggtcaggtac ccgtcacatc gatgaccggg accgggcttc atggagggac
      181 ggggtcagtg ctgccctagc tccgaaagaa aggattttgt tttgccagtt actgtggttg
      241 ctaatgtcat catcatcacc accaccacta ctaccaccac caccaccatc atcatcatca
      301 tcatcgtatt ttaattaaaa taatcgtcca ggagcgaagc ggcgtgtccc ttttagcttc
      361 ttcggggcga taacaaagca gcgcgggttt cctcccacca gcgctgcttt ttaaactgct
      421 gggtttgtgg tagggagaga aaatggagag agggacgaac acagagactc cgtcctaaag
      481 cagaaattaa acccgacctc agacaccggg cgtgactgga ttccttcttg ttcccacacc
      541 tcccccctca tttggattag aagaggagaa agaaaatctc ccgcattgga ctgaaaccgc
      601 agggaataat tattactgta tttccactaa agccggggca aaaaggaggt ggccttagca
      661 attaatccaa gacttcgatg tgtgaccata aactggacaa tttaggcaaa acaaattaaa
      721 caaaccttcc ggagggaggg aaaaaaagac cgcccaggac cgcaccgcgg cctaactgcc
      781 ggtctctcag tgagagaggg ggaaagcaaa gaccccttcc acaacctgga cctcggctcc
      841 tgcccctctc ccgccggagg aggagtggag atcctatgca gaggggccgc tctctctaaa
      901 tatgccccag gatgacggag cgtccgccga gcgaggcggc acgcagtgac cccccgctag
      961 acggactgga cgcggccgag gcccgcatgg cccccccgca cctggtcctg ctgaacggcg
     1021 tcgccaagga gacgagccgc gcggccccgg cggagccccc ggtcatcgag ctgggcgcgc
     1081 gcggcggcgg cccggggggc ggccccgccg gtgggggcgg cgccgcgcga gacttaaagg
     1141 gccgcgacgc ggcggctccc gaagcgcgcc atcgggtacc caccaccgag ctgtgcagac
     1201 ctcctgggcc cgcgcccgcc tcggcccccg cagagctgcc cggcgacggc cgcatggtgc
     1261 agttgagccc gcccgcgctg gcggcccccg ccgcccccgg ccgcgcgctg ctctacagcc
     1321 tcagccagcc gctggcttct ctcggcagtg ggttctttgg ggagccagat gccttcccta
     1381 tgtttgccac caacaaccga gtgaagagga gaccctcccc ttatgagatg gagattactg
     1441 atggtcccca caccaaagtc gtacggcgca tcttcaccaa cagccgggag cgatggcggc
     1501 agcagaacgt aaacggggcc ttcgctgagc tccgcaagct gatccccacg catcccccgg
     1561 acaagaagct cagcaagaat gagatcctcc gcctggccat gaagtacatc aacttcctgg
     1621 ccaagctgct caatgaccag gaggaggagg gcagccagcg ggccaaaccc ggcaaggacc
     1681 ctgcggtggg ggctggtgga gggggtggtg gcggaggggg cgcagcacct ccagatgaac
     1741 tcctgcagga cgtgctgtcc ccgaactcca gctgtggtag ctccctggac ggggcagcca
     1801 gcccggacag ctacacggaa gagccggcac ccaagcacac ggcccgcagc ctccatcctg
     1861 ccatgctgcc cgccgcggat ggagccggcc ctcggtgatg ggtctggggc cacccaggac
     1921 cagccgggag ggtgccctca ggccacgggc accatgggct ttagggcagg tggggtgagg
     1981 attgggcagc tctgaagcag ggcatggact tttgatgagc tttccttgat gtctgagctg
     2041 tgggaagtcc cagctgcctc tggggctggc tttcctgttt cctgcctcag taggagaaca
     2101 gaaaaatgga gcaaagtggt aggtactttt tatgaagatg gcacggtctt cccccttttc
     2161 catatcccta agacttctca agtaagaggc tggcgtggcg ttgcttttgg cctggcgcac
     2221 gggagccctg tcttagctga gacctggggt tgtcagctct ctcctgtgtc cggcagcctc
     2281 tgcctcgcct ttagcccctc ccaagctcgc tggggtggct tttgtggcca cactgtccaa
     2341 aaatacaggt acccaatagc tgcccatttc ttgagcccca tcttcaccca ggcccctgtt
     2401 ggtccgtcca gcttgccagt gctgcagaga gtctcaagcc tcgaggtgcc ttcttcaggg
     2461 cctggctgaa gaagacagcc agtggacagc ctgctctcga ctagctgggc cagagggtca
     2521 gaaacccaga agcccttact ccttgccctg gggatcgaag ctctgctttc tccccactga
     2581 gacttgcctt cctcgtcctt gtggctgtgg ggactgagtc tgcggctgtg agcgtgccct
     2641 gtgagctttg ttcgaaggca gacaaaggag aaatgatgag agtgaaattg agcaagagct
     2701 atttggggca agtgggcttc aaatcgcggt ggtgcctcag agctacctgc ctgcgtcctc
     2761 agcgacaccg ctgttcatgc agggagcaga tgccaatgtg ctgatcggtg tgtgttggtg
     2821 ctgagagtag acgtgtggcc ccatctcgcg ttctcctagc tcctcagagg ggcctccctg
     2881 ctgcaggatg tctgtttgct ggtggtctgg tctgggtcct gaaactgaat cgacaacaaa
     2941 ctctgtccta tgaattcctg gcatttggga ttctgcttga cttcaggtat ttgtgggatc
     3001 tctaggtctt gatatgaccc aggatctagc cccacttcta gggcctggag agcccagtga
     3061 gcgaccaggc cctggcggag acccaaacac atcgacattc acttagcaga accttcggca
     3121 tccctgagcg cacaaatttt ggtcatccag ggtgtgtatg ggaggctggc gtgacacggt
     3181 aggagtgctc ccctccagaa gctgtacatg acatttttgt aaatcaaatc cttatcttca
     3241 ccttttaaag aaatactgcc acgagtccct tggtaaagtg gagaatcctt ttgtagagtg
     3301 gactgctgcc ccctcattga tctcccgtgt cgatccagat ggtgggacat ggttttctta
     3361 aggtgacgcc tgcctgtgac ccatatccca agcccctgga acaaactgca cacgagtcct
     3421 acatacctgt cactgtgccc tcaagtcacc ccagccggct ctgaccaggc tctgcctttg
     3481 aggtcagagg ggaaacaatg ctctgacttt gccccgtcca tagcaaacgt tgaggaacca
     3541 tcgctgcggc tgtcgggaaa ggcgctcaca ccttatgggc tccagcctgg tggctcgcct
     3601 tcgccatggc aggaccttgg ggacagccac atgtccatgg ggaatgatcc ctgctctcct
     3661 ccccttcctt ttaagttgtg cgaggagagg tccagtttgt gggggtggga gcaacatggt
     3721 taacccttgt agcgctctct ctgtcccatt tcagcgcccc ccccccagtc atattttgat
     3781 gaacattagg attcgttcct ttctgatact tggaagctcc tgtgaaaaat cccatctgtc
     3841 taaagatgga gcacctgttc taggtcctaa ggctgtgttt gcttccggtg ggttaatttg
     3901 acctgggagt gaaaagtggc cacggtgagc ataggtggat gggttttagg agatggatca
     3961 cacgttcttt gaggaactcc agctactggc ttcctcttct ctcagacttg cagtgtgacc
     4021 tggaaaagtt ctctctctga aagtcaattt ctcataaata cgctagcttg gcctgtctcc
     4081 tagggctgtg gtgtggactg aatggaatcg tgaaagtaga agcattttga gaccgtacgg
     4141 aactctgtcc cccactatca ttcctgcaat ggggtttccc accctgagtc cgggacctag
     4201 gcagtgggcc agtctgcctg tctgcatagc atttgggtaa tttaggttct aaaccacttt
     4261 atcctgagtt atctaggtta tccttatctc tccagattga cctcatttca gtctcattcc
     4321 aaagcaaggc acaggaggga gactagaaaa gagagatggg aacagaggca gaatatgtaa
     4381 aaagtactac agctacccga gacaggcctg ggtaggggtg ggcaaagctt cgtgtctttg
     4441 ttaagtacta gaaaagatcc ataattttca ctttcctttc cagcacctcc ccccaccata
     4501 ctcttctcct tcctctgcct cctcttcacc catgaacatt ctccatccat gaataatatc
     4561 tgtacaaaaa ggaaaaaatg taaagaaaac atgaggagga caaagatgat tgttaatgac
     4621 tggagggaat cacgtctttt aagacaaatt cgttttcttt tatttgtagt ggcaaacgac
     4681 aagatggtac aacctttatc cttttccgaa agcaaaacaa agggcacagc atcggtagtc
     4741 agccgacaac tgtctcggcc tttgggggtg gtcgtgtcgt acttgtgatg tcaatggtac
     4801 gtggcccccg ccgaaggctt gccccccagc ccatgtacat agcgcatcgt tcctgcgggc
     4861 gggcccagca ctttccgtca atgttgtact gtacgtgatg cattgcgttg gtctctgcat
     4921 ttttctgcag aagaggagta accgctccag gtaccttgac ctttgtacag cccagaggcc
     4981 aacactgtgg gcgtgtgact ctttagcgac aaaacccatg tggtgatgat gtgtgtatat
     5041 atataaggat atattgggaa gatttctaaa taaaagtttt a
//
LOCUS       XM_032604922            4443 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TAL bHLH transcription factor 1,
            erythroid differentiation factor (TAL1), transcript variant X3,
            mRNA.
ACCESSION   XM_032604922
VERSION     XM_032604922.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4443
                     /gene="TAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739946"
     CDS             274..1260
                     /gene="TAL1"
                     /codon_start=1
                     /product="T-cell acute lymphocytic leukemia protein 1
                     isoform X1"
                     /protein_id="XP_032460813.1"
                     /db_xref="GeneID:116739946"
                     /translation="MTERPPSEAARSDPPLDGLDAAEARMAPPHLVLLNGVAKETSRA
                     APAEPPVIELGARGGGPGGGPAGGGGAARDLKGRDAAAPEARHRVPTTELCRPPGPAP
                     ASAPAELPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFAT
                     NNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDK
                     KLSKNEILRLAMKYINFLAKLLNDQEEEGSQRAKPGKDPAVGAGGGGGGGGGAAPPDE
                     LLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR"
     misc_feature    817..1011
                     /gene="TAL1"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     T-cell acute lymphocytic leukemia protein 1 (TAL-1) and
                     similar proteins; Region: bHLH_TS_TAL1; cd19706"
                     /db_xref="CDD:381549"
     misc_feature    order(829..831,841..843,847..855,859..861,874..876,
                     928..930,934..939)
                     /gene="TAL1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381549"
     misc_feature    order(868..873,880..885,892..894,901..903,940..942,
                     949..954,961..963,967..975,979..984,991..993,1000..1005)
                     /gene="TAL1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381549"
     misc_feature    order(901..903,907..915,919..921,967..969,976..981,
                     985..990,997..1002)
                     /gene="TAL1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381549"
ORIGIN      
        1 cgcgccgcgg cgcggaagcg ggggactgga gggggggggg cggggggagg gctcggcact
       61 aaggaccagg cctcaaaatg gccatacgcg taccccctta gcggcaaaac accgcccagg
      121 accgcaccgc ggcctaactg ccggtctctc agtgagagag ggggaaagca aagacccctt
      181 ccacaacctg gacctcggct cctgcccctc tcccgccgga ggaggagtgg agatcctatg
      241 cagaggggcc gctctctcta aatatgcccc aggatgacgg agcgtccgcc gagcgaggcg
      301 gcacgcagtg accccccgct agacggactg gacgcggccg aggcccgcat ggcccccccg
      361 cacctggtcc tgctgaacgg cgtcgccaag gagacgagcc gcgcggcccc ggcggagccc
      421 ccggtcatcg agctgggcgc gcgcggcggc ggcccggggg gcggccccgc cggtgggggc
      481 ggcgccgcgc gagacttaaa gggccgcgac gcggcggctc ccgaagcgcg ccatcgggta
      541 cccaccaccg agctgtgcag acctcctggg cccgcgcccg cctcggcccc cgcagagctg
      601 cccggcgacg gccgcatggt gcagttgagc ccgcccgcgc tggcggcccc cgccgccccc
      661 ggccgcgcgc tgctctacag cctcagccag ccgctggctt ctctcggcag tgggttcttt
      721 ggggagccag atgccttccc tatgtttgcc accaacaacc gagtgaagag gagaccctcc
      781 ccttatgaga tggagattac tgatggtccc cacaccaaag tcgtacggcg catcttcacc
      841 aacagccggg agcgatggcg gcagcagaac gtaaacgggg ccttcgctga gctccgcaag
      901 ctgatcccca cgcatccccc ggacaagaag ctcagcaaga atgagatcct ccgcctggcc
      961 atgaagtaca tcaacttcct ggccaagctg ctcaatgacc aggaggagga gggcagccag
     1021 cgggccaaac ccggcaagga ccctgcggtg ggggctggtg gagggggtgg tggcggaggg
     1081 ggcgcagcac ctccagatga actcctgcag gacgtgctgt ccccgaactc cagctgtggt
     1141 agctccctgg acggggcagc cagcccggac agctacacgg aagagccggc acccaagcac
     1201 acggcccgca gcctccatcc tgccatgctg cccgccgcgg atggagccgg ccctcggtga
     1261 tgggtctggg gccacccagg accagccggg agggtgccct caggccacgg gcaccatggg
     1321 ctttagggca ggtggggtga ggattgggca gctctgaagc agggcatgga cttttgatga
     1381 gctttccttg atgtctgagc tgtgggaagt cccagctgcc tctggggctg gctttcctgt
     1441 ttcctgcctc agtaggagaa cagaaaaatg gagcaaagtg gtaggtactt tttatgaaga
     1501 tggcacggtc ttcccccttt tccatatccc taagacttct caagtaagag gctggcgtgg
     1561 cgttgctttt ggcctggcgc acgggagccc tgtcttagct gagacctggg gttgtcagct
     1621 ctctcctgtg tccggcagcc tctgcctcgc ctttagcccc tcccaagctc gctggggtgg
     1681 cttttgtggc cacactgtcc aaaaatacag gtacccaata gctgcccatt tcttgagccc
     1741 catcttcacc caggcccctg ttggtccgtc cagcttgcca gtgctgcaga gagtctcaag
     1801 cctcgaggtg ccttcttcag ggcctggctg aagaagacag ccagtggaca gcctgctctc
     1861 gactagctgg gccagagggt cagaaaccca gaagccctta ctccttgccc tggggatcga
     1921 agctctgctt tctccccact gagacttgcc ttcctcgtcc ttgtggctgt ggggactgag
     1981 tctgcggctg tgagcgtgcc ctgtgagctt tgttcgaagg cagacaaagg agaaatgatg
     2041 agagtgaaat tgagcaagag ctatttgggg caagtgggct tcaaatcgcg gtggtgcctc
     2101 agagctacct gcctgcgtcc tcagcgacac cgctgttcat gcagggagca gatgccaatg
     2161 tgctgatcgg tgtgtgttgg tgctgagagt agacgtgtgg ccccatctcg cgttctccta
     2221 gctcctcaga ggggcctccc tgctgcagga tgtctgtttg ctggtggtct ggtctgggtc
     2281 ctgaaactga atcgacaaca aactctgtcc tatgaattcc tggcatttgg gattctgctt
     2341 gacttcaggt atttgtggga tctctaggtc ttgatatgac ccaggatcta gccccacttc
     2401 tagggcctgg agagcccagt gagcgaccag gccctggcgg agacccaaac acatcgacat
     2461 tcacttagca gaaccttcgg catccctgag cgcacaaatt ttggtcatcc agggtgtgta
     2521 tgggaggctg gcgtgacacg gtaggagtgc tcccctccag aagctgtaca tgacattttt
     2581 gtaaatcaaa tccttatctt caccttttaa agaaatactg ccacgagtcc cttggtaaag
     2641 tggagaatcc ttttgtagag tggactgctg ccccctcatt gatctcccgt gtcgatccag
     2701 atggtgggac atggttttct taaggtgacg cctgcctgtg acccatatcc caagcccctg
     2761 gaacaaactg cacacgagtc ctacatacct gtcactgtgc cctcaagtca ccccagccgg
     2821 ctctgaccag gctctgcctt tgaggtcaga ggggaaacaa tgctctgact ttgccccgtc
     2881 catagcaaac gttgaggaac catcgctgcg gctgtcggga aaggcgctca caccttatgg
     2941 gctccagcct ggtggctcgc cttcgccatg gcaggacctt ggggacagcc acatgtccat
     3001 ggggaatgat ccctgctctc ctccccttcc ttttaagttg tgcgaggaga ggtccagttt
     3061 gtgggggtgg gagcaacatg gttaaccctt gtagcgctct ctctgtccca tttcagcgcc
     3121 ccccccccag tcatattttg atgaacatta ggattcgttc ctttctgata cttggaagct
     3181 cctgtgaaaa atcccatctg tctaaagatg gagcacctgt tctaggtcct aaggctgtgt
     3241 ttgcttccgg tgggttaatt tgacctggga gtgaaaagtg gccacggtga gcataggtgg
     3301 atgggtttta ggagatggat cacacgttct ttgaggaact ccagctactg gcttcctctt
     3361 ctctcagact tgcagtgtga cctggaaaag ttctctctct gaaagtcaat ttctcataaa
     3421 tacgctagct tggcctgtct cctagggctg tggtgtggac tgaatggaat cgtgaaagta
     3481 gaagcatttt gagaccgtac ggaactctgt cccccactat cattcctgca atggggtttc
     3541 ccaccctgag tccgggacct aggcagtggg ccagtctgcc tgtctgcata gcatttgggt
     3601 aatttaggtt ctaaaccact ttatcctgag ttatctaggt tatccttatc tctccagatt
     3661 gacctcattt cagtctcatt ccaaagcaag gcacaggagg gagactagaa aagagagatg
     3721 ggaacagagg cagaatatgt aaaaagtact acagctaccc gagacaggcc tgggtagggg
     3781 tgggcaaagc ttcgtgtctt tgttaagtac tagaaaagat ccataatttt cactttcctt
     3841 tccagcacct ccccccacca tactcttctc cttcctctgc ctcctcttca cccatgaaca
     3901 ttctccatcc atgaataata tctgtacaaa aaggaaaaaa tgtaaagaaa acatgaggag
     3961 gacaaagatg attgttaatg actggaggga atcacgtctt ttaagacaaa ttcgttttct
     4021 tttatttgta gtggcaaacg acaagatggt acaaccttta tccttttccg aaagcaaaac
     4081 aaagggcaca gcatcggtag tcagccgaca actgtctcgg cctttggggg tggtcgtgtc
     4141 gtacttgtga tgtcaatggt acgtggcccc cgccgaaggc ttgcccccca gcccatgtac
     4201 atagcgcatc gttcctgcgg gcgggcccag cactttccgt caatgttgta ctgtacgtga
     4261 tgcattgcgt tggtctctgc atttttctgc agaagaggag taaccgctcc aggtaccttg
     4321 acctttgtac agcccagagg ccaacactgt gggcgtgtga ctctttagcg acaaaaccca
     4381 tgtggtgatg atgtgtgtat atatataagg atatattggg aagatttcta aataaaagtt
     4441 tta
//
LOCUS       XM_032604930            4567 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TAL bHLH transcription factor 1,
            erythroid differentiation factor (TAL1), transcript variant X4,
            mRNA.
ACCESSION   XM_032604930
VERSION     XM_032604930.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4567
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4567
                     /gene="TAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739946"
     CDS             398..1384
                     /gene="TAL1"
                     /codon_start=1
                     /product="T-cell acute lymphocytic leukemia protein 1
                     isoform X1"
                     /protein_id="XP_032460821.1"
                     /db_xref="GeneID:116739946"
                     /translation="MTERPPSEAARSDPPLDGLDAAEARMAPPHLVLLNGVAKETSRA
                     APAEPPVIELGARGGGPGGGPAGGGGAARDLKGRDAAAPEARHRVPTTELCRPPGPAP
                     ASAPAELPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFAT
                     NNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDK
                     KLSKNEILRLAMKYINFLAKLLNDQEEEGSQRAKPGKDPAVGAGGGGGGGGGAAPPDE
                     LLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR"
     misc_feature    941..1135
                     /gene="TAL1"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     T-cell acute lymphocytic leukemia protein 1 (TAL-1) and
                     similar proteins; Region: bHLH_TS_TAL1; cd19706"
                     /db_xref="CDD:381549"
     misc_feature    order(953..955,965..967,971..979,983..985,998..1000,
                     1052..1054,1058..1063)
                     /gene="TAL1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381549"
     misc_feature    order(992..997,1004..1009,1016..1018,1025..1027,
                     1064..1066,1073..1078,1085..1087,1091..1099,1103..1108,
                     1115..1117,1124..1129)
                     /gene="TAL1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381549"
     misc_feature    order(1025..1027,1031..1039,1043..1045,1091..1093,
                     1100..1105,1109..1114,1121..1126)
                     /gene="TAL1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381549"
ORIGIN      
        1 tcacgtttta ttccaaatta tgatgtattc ggaagccagt gttggcttgg atgagcagcc
       61 agatcagcgg ctgctctgtc cagaggccac tctgtgcctc ggtgttggag gggttgttag
      121 tgagtgggag gctcttccag gctggaagct gagcagcgct cgcggaggcc agcgccttca
      181 ggccggtagc cgccggcttc ggttctcgcc gcattcaggc ttcgtccatt tctgaccgcc
      241 caggaccgca ccgcggccta actgccggtc tctcagtgag agagggggaa agcaaagacc
      301 ccttccacaa cctggacctc ggctcctgcc cctctcccgc cggaggagga gtggagatcc
      361 tatgcagagg ggccgctctc tctaaatatg ccccaggatg acggagcgtc cgccgagcga
      421 ggcggcacgc agtgaccccc cgctagacgg actggacgcg gccgaggccc gcatggcccc
      481 cccgcacctg gtcctgctga acggcgtcgc caaggagacg agccgcgcgg ccccggcgga
      541 gcccccggtc atcgagctgg gcgcgcgcgg cggcggcccg gggggcggcc ccgccggtgg
      601 gggcggcgcc gcgcgagact taaagggccg cgacgcggcg gctcccgaag cgcgccatcg
      661 ggtacccacc accgagctgt gcagacctcc tgggcccgcg cccgcctcgg cccccgcaga
      721 gctgcccggc gacggccgca tggtgcagtt gagcccgccc gcgctggcgg cccccgccgc
      781 ccccggccgc gcgctgctct acagcctcag ccagccgctg gcttctctcg gcagtgggtt
      841 ctttggggag ccagatgcct tccctatgtt tgccaccaac aaccgagtga agaggagacc
      901 ctccccttat gagatggaga ttactgatgg tccccacacc aaagtcgtac ggcgcatctt
      961 caccaacagc cgggagcgat ggcggcagca gaacgtaaac ggggccttcg ctgagctccg
     1021 caagctgatc cccacgcatc ccccggacaa gaagctcagc aagaatgaga tcctccgcct
     1081 ggccatgaag tacatcaact tcctggccaa gctgctcaat gaccaggagg aggagggcag
     1141 ccagcgggcc aaacccggca aggaccctgc ggtgggggct ggtggagggg gtggtggcgg
     1201 agggggcgca gcacctccag atgaactcct gcaggacgtg ctgtccccga actccagctg
     1261 tggtagctcc ctggacgggg cagccagccc ggacagctac acggaagagc cggcacccaa
     1321 gcacacggcc cgcagcctcc atcctgccat gctgcccgcc gcggatggag ccggccctcg
     1381 gtgatgggtc tggggccacc caggaccagc cgggagggtg ccctcaggcc acgggcacca
     1441 tgggctttag ggcaggtggg gtgaggattg ggcagctctg aagcagggca tggacttttg
     1501 atgagctttc cttgatgtct gagctgtggg aagtcccagc tgcctctggg gctggctttc
     1561 ctgtttcctg cctcagtagg agaacagaaa aatggagcaa agtggtaggt actttttatg
     1621 aagatggcac ggtcttcccc cttttccata tccctaagac ttctcaagta agaggctggc
     1681 gtggcgttgc ttttggcctg gcgcacggga gccctgtctt agctgagacc tggggttgtc
     1741 agctctctcc tgtgtccggc agcctctgcc tcgcctttag cccctcccaa gctcgctggg
     1801 gtggcttttg tggccacact gtccaaaaat acaggtaccc aatagctgcc catttcttga
     1861 gccccatctt cacccaggcc cctgttggtc cgtccagctt gccagtgctg cagagagtct
     1921 caagcctcga ggtgccttct tcagggcctg gctgaagaag acagccagtg gacagcctgc
     1981 tctcgactag ctgggccaga gggtcagaaa cccagaagcc cttactcctt gccctgggga
     2041 tcgaagctct gctttctccc cactgagact tgccttcctc gtccttgtgg ctgtggggac
     2101 tgagtctgcg gctgtgagcg tgccctgtga gctttgttcg aaggcagaca aaggagaaat
     2161 gatgagagtg aaattgagca agagctattt ggggcaagtg ggcttcaaat cgcggtggtg
     2221 cctcagagct acctgcctgc gtcctcagcg acaccgctgt tcatgcaggg agcagatgcc
     2281 aatgtgctga tcggtgtgtg ttggtgctga gagtagacgt gtggccccat ctcgcgttct
     2341 cctagctcct cagaggggcc tccctgctgc aggatgtctg tttgctggtg gtctggtctg
     2401 ggtcctgaaa ctgaatcgac aacaaactct gtcctatgaa ttcctggcat ttgggattct
     2461 gcttgacttc aggtatttgt gggatctcta ggtcttgata tgacccagga tctagcccca
     2521 cttctagggc ctggagagcc cagtgagcga ccaggccctg gcggagaccc aaacacatcg
     2581 acattcactt agcagaacct tcggcatccc tgagcgcaca aattttggtc atccagggtg
     2641 tgtatgggag gctggcgtga cacggtagga gtgctcccct ccagaagctg tacatgacat
     2701 ttttgtaaat caaatcctta tcttcacctt ttaaagaaat actgccacga gtcccttggt
     2761 aaagtggaga atccttttgt agagtggact gctgccccct cattgatctc ccgtgtcgat
     2821 ccagatggtg ggacatggtt ttcttaaggt gacgcctgcc tgtgacccat atcccaagcc
     2881 cctggaacaa actgcacacg agtcctacat acctgtcact gtgccctcaa gtcaccccag
     2941 ccggctctga ccaggctctg cctttgaggt cagaggggaa acaatgctct gactttgccc
     3001 cgtccatagc aaacgttgag gaaccatcgc tgcggctgtc gggaaaggcg ctcacacctt
     3061 atgggctcca gcctggtggc tcgccttcgc catggcagga ccttggggac agccacatgt
     3121 ccatggggaa tgatccctgc tctcctcccc ttccttttaa gttgtgcgag gagaggtcca
     3181 gtttgtgggg gtgggagcaa catggttaac ccttgtagcg ctctctctgt cccatttcag
     3241 cgcccccccc ccagtcatat tttgatgaac attaggattc gttcctttct gatacttgga
     3301 agctcctgtg aaaaatccca tctgtctaaa gatggagcac ctgttctagg tcctaaggct
     3361 gtgtttgctt ccggtgggtt aatttgacct gggagtgaaa agtggccacg gtgagcatag
     3421 gtggatgggt tttaggagat ggatcacacg ttctttgagg aactccagct actggcttcc
     3481 tcttctctca gacttgcagt gtgacctgga aaagttctct ctctgaaagt caatttctca
     3541 taaatacgct agcttggcct gtctcctagg gctgtggtgt ggactgaatg gaatcgtgaa
     3601 agtagaagca ttttgagacc gtacggaact ctgtccccca ctatcattcc tgcaatgggg
     3661 tttcccaccc tgagtccggg acctaggcag tgggccagtc tgcctgtctg catagcattt
     3721 gggtaattta ggttctaaac cactttatcc tgagttatct aggttatcct tatctctcca
     3781 gattgacctc atttcagtct cattccaaag caaggcacag gagggagact agaaaagaga
     3841 gatgggaaca gaggcagaat atgtaaaaag tactacagct acccgagaca ggcctgggta
     3901 ggggtgggca aagcttcgtg tctttgttaa gtactagaaa agatccataa ttttcacttt
     3961 cctttccagc acctcccccc accatactct tctccttcct ctgcctcctc ttcacccatg
     4021 aacattctcc atccatgaat aatatctgta caaaaaggaa aaaatgtaaa gaaaacatga
     4081 ggaggacaaa gatgattgtt aatgactgga gggaatcacg tcttttaaga caaattcgtt
     4141 ttcttttatt tgtagtggca aacgacaaga tggtacaacc tttatccttt tccgaaagca
     4201 aaacaaaggg cacagcatcg gtagtcagcc gacaactgtc tcggcctttg ggggtggtcg
     4261 tgtcgtactt gtgatgtcaa tggtacgtgg cccccgccga aggcttgccc cccagcccat
     4321 gtacatagcg catcgttcct gcgggcgggc ccagcacttt ccgtcaatgt tgtactgtac
     4381 gtgatgcatt gcgttggtct ctgcattttt ctgcagaaga ggagtaaccg ctccaggtac
     4441 cttgaccttt gtacagccca gaggccaaca ctgtgggcgt gtgactcttt agcgacaaaa
     4501 cccatgtggt gatgatgtgt gtatatatat aaggatatat tgggaagatt tctaaataaa
     4561 agtttta
//
LOCUS       XM_032604940            4354 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TAL bHLH transcription factor 1,
            erythroid differentiation factor (TAL1), transcript variant X5,
            mRNA.
ACCESSION   XM_032604940
VERSION     XM_032604940.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4354
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4354
                     /gene="TAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739946"
     CDS             185..1171
                     /gene="TAL1"
                     /codon_start=1
                     /product="T-cell acute lymphocytic leukemia protein 1
                     isoform X1"
                     /protein_id="XP_032460831.1"
                     /db_xref="GeneID:116739946"
                     /translation="MTERPPSEAARSDPPLDGLDAAEARMAPPHLVLLNGVAKETSRA
                     APAEPPVIELGARGGGPGGGPAGGGGAARDLKGRDAAAPEARHRVPTTELCRPPGPAP
                     ASAPAELPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFAT
                     NNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDK
                     KLSKNEILRLAMKYINFLAKLLNDQEEEGSQRAKPGKDPAVGAGGGGGGGGGAAPPDE
                     LLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR"
     misc_feature    728..922
                     /gene="TAL1"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     T-cell acute lymphocytic leukemia protein 1 (TAL-1) and
                     similar proteins; Region: bHLH_TS_TAL1; cd19706"
                     /db_xref="CDD:381549"
     misc_feature    order(740..742,752..754,758..766,770..772,785..787,
                     839..841,845..850)
                     /gene="TAL1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381549"
     misc_feature    order(779..784,791..796,803..805,812..814,851..853,
                     860..865,872..874,878..886,890..895,902..904,911..916)
                     /gene="TAL1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381549"
     misc_feature    order(812..814,818..826,830..832,878..880,887..892,
                     896..901,908..913)
                     /gene="TAL1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381549"
ORIGIN      
        1 tccttttctt ccaatgtctt tgtcgtcctt ctccacctct gtccttttgg ccctcagtct
       61 ctgtctcccg ggcaccctct tctcttctcc caaaccagag gccccctttc cctcctgccc
      121 cagcactgcg ggcgggtgtg tgtccacgtg gcgctaggtt tgtccgtctc ttcccacgtt
      181 tcggatgacg gagcgtccgc cgagcgaggc ggcacgcagt gaccccccgc tagacggact
      241 ggacgcggcc gaggcccgca tggccccccc gcacctggtc ctgctgaacg gcgtcgccaa
      301 ggagacgagc cgcgcggccc cggcggagcc cccggtcatc gagctgggcg cgcgcggcgg
      361 cggcccgggg ggcggccccg ccggtggggg cggcgccgcg cgagacttaa agggccgcga
      421 cgcggcggct cccgaagcgc gccatcgggt acccaccacc gagctgtgca gacctcctgg
      481 gcccgcgccc gcctcggccc ccgcagagct gcccggcgac ggccgcatgg tgcagttgag
      541 cccgcccgcg ctggcggccc ccgccgcccc cggccgcgcg ctgctctaca gcctcagcca
      601 gccgctggct tctctcggca gtgggttctt tggggagcca gatgccttcc ctatgtttgc
      661 caccaacaac cgagtgaaga ggagaccctc cccttatgag atggagatta ctgatggtcc
      721 ccacaccaaa gtcgtacggc gcatcttcac caacagccgg gagcgatggc ggcagcagaa
      781 cgtaaacggg gccttcgctg agctccgcaa gctgatcccc acgcatcccc cggacaagaa
      841 gctcagcaag aatgagatcc tccgcctggc catgaagtac atcaacttcc tggccaagct
      901 gctcaatgac caggaggagg agggcagcca gcgggccaaa cccggcaagg accctgcggt
      961 gggggctggt ggagggggtg gtggcggagg gggcgcagca cctccagatg aactcctgca
     1021 ggacgtgctg tccccgaact ccagctgtgg tagctccctg gacggggcag ccagcccgga
     1081 cagctacacg gaagagccgg cacccaagca cacggcccgc agcctccatc ctgccatgct
     1141 gcccgccgcg gatggagccg gccctcggtg atgggtctgg ggccacccag gaccagccgg
     1201 gagggtgccc tcaggccacg ggcaccatgg gctttagggc aggtggggtg aggattgggc
     1261 agctctgaag cagggcatgg acttttgatg agctttcctt gatgtctgag ctgtgggaag
     1321 tcccagctgc ctctggggct ggctttcctg tttcctgcct cagtaggaga acagaaaaat
     1381 ggagcaaagt ggtaggtact ttttatgaag atggcacggt cttccccctt ttccatatcc
     1441 ctaagacttc tcaagtaaga ggctggcgtg gcgttgcttt tggcctggcg cacgggagcc
     1501 ctgtcttagc tgagacctgg ggttgtcagc tctctcctgt gtccggcagc ctctgcctcg
     1561 cctttagccc ctcccaagct cgctggggtg gcttttgtgg ccacactgtc caaaaataca
     1621 ggtacccaat agctgcccat ttcttgagcc ccatcttcac ccaggcccct gttggtccgt
     1681 ccagcttgcc agtgctgcag agagtctcaa gcctcgaggt gccttcttca gggcctggct
     1741 gaagaagaca gccagtggac agcctgctct cgactagctg ggccagaggg tcagaaaccc
     1801 agaagccctt actccttgcc ctggggatcg aagctctgct ttctccccac tgagacttgc
     1861 cttcctcgtc cttgtggctg tggggactga gtctgcggct gtgagcgtgc cctgtgagct
     1921 ttgttcgaag gcagacaaag gagaaatgat gagagtgaaa ttgagcaaga gctatttggg
     1981 gcaagtgggc ttcaaatcgc ggtggtgcct cagagctacc tgcctgcgtc ctcagcgaca
     2041 ccgctgttca tgcagggagc agatgccaat gtgctgatcg gtgtgtgttg gtgctgagag
     2101 tagacgtgtg gccccatctc gcgttctcct agctcctcag aggggcctcc ctgctgcagg
     2161 atgtctgttt gctggtggtc tggtctgggt cctgaaactg aatcgacaac aaactctgtc
     2221 ctatgaattc ctggcatttg ggattctgct tgacttcagg tatttgtggg atctctaggt
     2281 cttgatatga cccaggatct agccccactt ctagggcctg gagagcccag tgagcgacca
     2341 ggccctggcg gagacccaaa cacatcgaca ttcacttagc agaaccttcg gcatccctga
     2401 gcgcacaaat tttggtcatc cagggtgtgt atgggaggct ggcgtgacac ggtaggagtg
     2461 ctcccctcca gaagctgtac atgacatttt tgtaaatcaa atccttatct tcacctttta
     2521 aagaaatact gccacgagtc ccttggtaaa gtggagaatc cttttgtaga gtggactgct
     2581 gccccctcat tgatctcccg tgtcgatcca gatggtggga catggttttc ttaaggtgac
     2641 gcctgcctgt gacccatatc ccaagcccct ggaacaaact gcacacgagt cctacatacc
     2701 tgtcactgtg ccctcaagtc accccagccg gctctgacca ggctctgcct ttgaggtcag
     2761 aggggaaaca atgctctgac tttgccccgt ccatagcaaa cgttgaggaa ccatcgctgc
     2821 ggctgtcggg aaaggcgctc acaccttatg ggctccagcc tggtggctcg ccttcgccat
     2881 ggcaggacct tggggacagc cacatgtcca tggggaatga tccctgctct cctccccttc
     2941 cttttaagtt gtgcgaggag aggtccagtt tgtgggggtg ggagcaacat ggttaaccct
     3001 tgtagcgctc tctctgtccc atttcagcgc ccccccccca gtcatatttt gatgaacatt
     3061 aggattcgtt cctttctgat acttggaagc tcctgtgaaa aatcccatct gtctaaagat
     3121 ggagcacctg ttctaggtcc taaggctgtg tttgcttccg gtgggttaat ttgacctggg
     3181 agtgaaaagt ggccacggtg agcataggtg gatgggtttt aggagatgga tcacacgttc
     3241 tttgaggaac tccagctact ggcttcctct tctctcagac ttgcagtgtg acctggaaaa
     3301 gttctctctc tgaaagtcaa tttctcataa atacgctagc ttggcctgtc tcctagggct
     3361 gtggtgtgga ctgaatggaa tcgtgaaagt agaagcattt tgagaccgta cggaactctg
     3421 tcccccacta tcattcctgc aatggggttt cccaccctga gtccgggacc taggcagtgg
     3481 gccagtctgc ctgtctgcat agcatttggg taatttaggt tctaaaccac tttatcctga
     3541 gttatctagg ttatccttat ctctccagat tgacctcatt tcagtctcat tccaaagcaa
     3601 ggcacaggag ggagactaga aaagagagat gggaacagag gcagaatatg taaaaagtac
     3661 tacagctacc cgagacaggc ctgggtaggg gtgggcaaag cttcgtgtct ttgttaagta
     3721 ctagaaaaga tccataattt tcactttcct ttccagcacc tccccccacc atactcttct
     3781 ccttcctctg cctcctcttc acccatgaac attctccatc catgaataat atctgtacaa
     3841 aaaggaaaaa atgtaaagaa aacatgagga ggacaaagat gattgttaat gactggaggg
     3901 aatcacgtct tttaagacaa attcgttttc ttttatttgt agtggcaaac gacaagatgg
     3961 tacaaccttt atccttttcc gaaagcaaaa caaagggcac agcatcggta gtcagccgac
     4021 aactgtctcg gcctttgggg gtggtcgtgt cgtacttgtg atgtcaatgg tacgtggccc
     4081 ccgccgaagg cttgcccccc agcccatgta catagcgcat cgttcctgcg ggcgggccca
     4141 gcactttccg tcaatgttgt actgtacgtg atgcattgcg ttggtctctg catttttctg
     4201 cagaagagga gtaaccgctc caggtacctt gacctttgta cagcccagag gccaacactg
     4261 tgggcgtgtg actctttagc gacaaaaccc atgtggtgat gatgtgtgta tatatataag
     4321 gatatattgg gaagatttct aaataaaagt ttta
//
LOCUS       XM_032604951            4149 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TAL bHLH transcription factor 1,
            erythroid differentiation factor (TAL1), transcript variant X6,
            mRNA.
ACCESSION   XM_032604951
VERSION     XM_032604951.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4149
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4149
                     /gene="TAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739946"
     CDS             367..966
                     /gene="TAL1"
                     /codon_start=1
                     /product="T-cell acute lymphocytic leukemia protein 1
                     isoform X2"
                     /protein_id="XP_032460842.1"
                     /db_xref="GeneID:116739946"
                     /translation="MRSAVKFFWKLQPSVDSGFFGEPDAFPMFATNNRVKRRPSPYEM
                     EITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK
                     YINFLAKLLNDQEEEGSQRAKPGKDPAVGAGGGGGGGGGAAPPDELLQDVLSPNSSCG
                     SSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR"
     misc_feature    523..717
                     /gene="TAL1"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     T-cell acute lymphocytic leukemia protein 1 (TAL-1) and
                     similar proteins; Region: bHLH_TS_TAL1; cd19706"
                     /db_xref="CDD:381549"
     misc_feature    order(535..537,547..549,553..561,565..567,580..582,
                     634..636,640..645)
                     /gene="TAL1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381549"
     misc_feature    order(574..579,586..591,598..600,607..609,646..648,
                     655..660,667..669,673..681,685..690,697..699,706..711)
                     /gene="TAL1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381549"
     misc_feature    order(607..609,613..621,625..627,673..675,682..687,
                     691..696,703..708)
                     /gene="TAL1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381549"
ORIGIN      
        1 cggggctcct cttccgcacg tcgggatccg gctgccctcc tcccggcggg gcagtgcggc
       61 tgagcgcgcg aagagagggg gagaggggga cgttttacac ccggggttgg aaaagtcttg
      121 gctggagccc ccgtgcaagt gaggaacgag ccctctgcta gtgtgtgtgt gtatgtgtgc
      181 gcacgcgggg ggtggtgtgc aggtgtcttg ttaacgcggc gtgctgggag cttggaagcc
      241 gaagaggggg agtaccggca tgcggctggc tgtgagcaga agcgcggggc gctgcctggt
      301 ggtggtggtg gtggtggggt ggacaggagg agtctgagtg tgagtaccag gaaggaatgt
      361 gtctgaatgc gctccgctgt gaaattcttc tggaagctgc agccctcggt ggacagtggg
      421 ttctttgggg agccagatgc cttccctatg tttgccacca acaaccgagt gaagaggaga
      481 ccctcccctt atgagatgga gattactgat ggtccccaca ccaaagtcgt acggcgcatc
      541 ttcaccaaca gccgggagcg atggcggcag cagaacgtaa acggggcctt cgctgagctc
      601 cgcaagctga tccccacgca tcccccggac aagaagctca gcaagaatga gatcctccgc
      661 ctggccatga agtacatcaa cttcctggcc aagctgctca atgaccagga ggaggagggc
      721 agccagcggg ccaaacccgg caaggaccct gcggtggggg ctggtggagg gggtggtggc
      781 ggagggggcg cagcacctcc agatgaactc ctgcaggacg tgctgtcccc gaactccagc
      841 tgtggtagct ccctggacgg ggcagccagc ccggacagct acacggaaga gccggcaccc
      901 aagcacacgg cccgcagcct ccatcctgcc atgctgcccg ccgcggatgg agccggccct
      961 cggtgatggg tctggggcca cccaggacca gccgggaggg tgccctcagg ccacgggcac
     1021 catgggcttt agggcaggtg gggtgaggat tgggcagctc tgaagcaggg catggacttt
     1081 tgatgagctt tccttgatgt ctgagctgtg ggaagtccca gctgcctctg gggctggctt
     1141 tcctgtttcc tgcctcagta ggagaacaga aaaatggagc aaagtggtag gtacttttta
     1201 tgaagatggc acggtcttcc cccttttcca tatccctaag acttctcaag taagaggctg
     1261 gcgtggcgtt gcttttggcc tggcgcacgg gagccctgtc ttagctgaga cctggggttg
     1321 tcagctctct cctgtgtccg gcagcctctg cctcgccttt agcccctccc aagctcgctg
     1381 gggtggcttt tgtggccaca ctgtccaaaa atacaggtac ccaatagctg cccatttctt
     1441 gagccccatc ttcacccagg cccctgttgg tccgtccagc ttgccagtgc tgcagagagt
     1501 ctcaagcctc gaggtgcctt cttcagggcc tggctgaaga agacagccag tggacagcct
     1561 gctctcgact agctgggcca gagggtcaga aacccagaag cccttactcc ttgccctggg
     1621 gatcgaagct ctgctttctc cccactgaga cttgccttcc tcgtccttgt ggctgtgggg
     1681 actgagtctg cggctgtgag cgtgccctgt gagctttgtt cgaaggcaga caaaggagaa
     1741 atgatgagag tgaaattgag caagagctat ttggggcaag tgggcttcaa atcgcggtgg
     1801 tgcctcagag ctacctgcct gcgtcctcag cgacaccgct gttcatgcag ggagcagatg
     1861 ccaatgtgct gatcggtgtg tgttggtgct gagagtagac gtgtggcccc atctcgcgtt
     1921 ctcctagctc ctcagagggg cctccctgct gcaggatgtc tgtttgctgg tggtctggtc
     1981 tgggtcctga aactgaatcg acaacaaact ctgtcctatg aattcctggc atttgggatt
     2041 ctgcttgact tcaggtattt gtgggatctc taggtcttga tatgacccag gatctagccc
     2101 cacttctagg gcctggagag cccagtgagc gaccaggccc tggcggagac ccaaacacat
     2161 cgacattcac ttagcagaac cttcggcatc cctgagcgca caaattttgg tcatccaggg
     2221 tgtgtatggg aggctggcgt gacacggtag gagtgctccc ctccagaagc tgtacatgac
     2281 atttttgtaa atcaaatcct tatcttcacc ttttaaagaa atactgccac gagtcccttg
     2341 gtaaagtgga gaatcctttt gtagagtgga ctgctgcccc ctcattgatc tcccgtgtcg
     2401 atccagatgg tgggacatgg ttttcttaag gtgacgcctg cctgtgaccc atatcccaag
     2461 cccctggaac aaactgcaca cgagtcctac atacctgtca ctgtgccctc aagtcacccc
     2521 agccggctct gaccaggctc tgcctttgag gtcagagggg aaacaatgct ctgactttgc
     2581 cccgtccata gcaaacgttg aggaaccatc gctgcggctg tcgggaaagg cgctcacacc
     2641 ttatgggctc cagcctggtg gctcgccttc gccatggcag gaccttgggg acagccacat
     2701 gtccatgggg aatgatccct gctctcctcc ccttcctttt aagttgtgcg aggagaggtc
     2761 cagtttgtgg gggtgggagc aacatggtta acccttgtag cgctctctct gtcccatttc
     2821 agcgcccccc ccccagtcat attttgatga acattaggat tcgttccttt ctgatacttg
     2881 gaagctcctg tgaaaaatcc catctgtcta aagatggagc acctgttcta ggtcctaagg
     2941 ctgtgtttgc ttccggtggg ttaatttgac ctgggagtga aaagtggcca cggtgagcat
     3001 aggtggatgg gttttaggag atggatcaca cgttctttga ggaactccag ctactggctt
     3061 cctcttctct cagacttgca gtgtgacctg gaaaagttct ctctctgaaa gtcaatttct
     3121 cataaatacg ctagcttggc ctgtctccta gggctgtggt gtggactgaa tggaatcgtg
     3181 aaagtagaag cattttgaga ccgtacggaa ctctgtcccc cactatcatt cctgcaatgg
     3241 ggtttcccac cctgagtccg ggacctaggc agtgggccag tctgcctgtc tgcatagcat
     3301 ttgggtaatt taggttctaa accactttat cctgagttat ctaggttatc cttatctctc
     3361 cagattgacc tcatttcagt ctcattccaa agcaaggcac aggagggaga ctagaaaaga
     3421 gagatgggaa cagaggcaga atatgtaaaa agtactacag ctacccgaga caggcctggg
     3481 taggggtggg caaagcttcg tgtctttgtt aagtactaga aaagatccat aattttcact
     3541 ttcctttcca gcacctcccc ccaccatact cttctccttc ctctgcctcc tcttcaccca
     3601 tgaacattct ccatccatga ataatatctg tacaaaaagg aaaaaatgta aagaaaacat
     3661 gaggaggaca aagatgattg ttaatgactg gagggaatca cgtcttttaa gacaaattcg
     3721 ttttctttta tttgtagtgg caaacgacaa gatggtacaa cctttatcct tttccgaaag
     3781 caaaacaaag ggcacagcat cggtagtcag ccgacaactg tctcggcctt tgggggtggt
     3841 cgtgtcgtac ttgtgatgtc aatggtacgt ggcccccgcc gaaggcttgc cccccagccc
     3901 atgtacatag cgcatcgttc ctgcgggcgg gcccagcact ttccgtcaat gttgtactgt
     3961 acgtgatgca ttgcgttggt ctctgcattt ttctgcagaa gaggagtaac cgctccaggt
     4021 accttgacct ttgtacagcc cagaggccaa cactgtgggc gtgtgactct ttagcgacaa
     4081 aacccatgtg gtgatgatgt gtgtatatat ataaggatat attgggaaga tttctaaata
     4141 aaagtttta
//
LOCUS       XM_032604960            4024 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TAL bHLH transcription factor 1,
            erythroid differentiation factor (TAL1), transcript variant X7,
            mRNA.
ACCESSION   XM_032604960
VERSION     XM_032604960.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4024
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4024
                     /gene="TAL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116739946"
     CDS             323..841
                     /gene="TAL1"
                     /codon_start=1
                     /product="T-cell acute lymphocytic leukemia protein 1
                     isoform X3"
                     /protein_id="XP_032460851.1"
                     /db_xref="GeneID:116739946"
                     /translation="MFATNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNV
                     NGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGSQRAKPGKDPA
                     VGAGGGGGGGGGAAPPDELLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHP
                     AMLPAADGAGPR"
     misc_feature    398..592
                     /gene="TAL1"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     T-cell acute lymphocytic leukemia protein 1 (TAL-1) and
                     similar proteins; Region: bHLH_TS_TAL1; cd19706"
                     /db_xref="CDD:381549"
     misc_feature    order(410..412,422..424,428..436,440..442,455..457,
                     509..511,515..520)
                     /gene="TAL1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381549"
     misc_feature    order(449..454,461..466,473..475,482..484,521..523,
                     530..535,542..544,548..556,560..565,572..574,581..586)
                     /gene="TAL1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:381549"
     misc_feature    order(482..484,488..496,500..502,548..550,557..562,
                     566..571,578..583)
                     /gene="TAL1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:381549"
ORIGIN      
        1 atgccaggct gcggacgact ccgcgctgtg gccacagctc cggcctgact tcggttcctg
       61 agccaacggc gtagacgagt ctgcttagaa aacaaatggc cacactgaac cagacatccc
      121 ggttggagga ccgcccagga ccgcaccgcg gcctaactgc cggtctctca gtgagagagg
      181 gggaaagcaa agaccccttc cacaacctgg acctcggctc ctgcccctct cccgccggag
      241 gaggagtgga gatcctatgc agaggggccg ctctctctaa atatgcccca gtgggttctt
      301 tggggagcca gatgccttcc ctatgtttgc caccaacaac cgagtgaaga ggagaccctc
      361 cccttatgag atggagatta ctgatggtcc ccacaccaaa gtcgtacggc gcatcttcac
      421 caacagccgg gagcgatggc ggcagcagaa cgtaaacggg gccttcgctg agctccgcaa
      481 gctgatcccc acgcatcccc cggacaagaa gctcagcaag aatgagatcc tccgcctggc
      541 catgaagtac atcaacttcc tggccaagct gctcaatgac caggaggagg agggcagcca
      601 gcgggccaaa cccggcaagg accctgcggt gggggctggt ggagggggtg gtggcggagg
      661 gggcgcagca cctccagatg aactcctgca ggacgtgctg tccccgaact ccagctgtgg
      721 tagctccctg gacggggcag ccagcccgga cagctacacg gaagagccgg cacccaagca
      781 cacggcccgc agcctccatc ctgccatgct gcccgccgcg gatggagccg gccctcggtg
      841 atgggtctgg ggccacccag gaccagccgg gagggtgccc tcaggccacg ggcaccatgg
      901 gctttagggc aggtggggtg aggattgggc agctctgaag cagggcatgg acttttgatg
      961 agctttcctt gatgtctgag ctgtgggaag tcccagctgc ctctggggct ggctttcctg
     1021 tttcctgcct cagtaggaga acagaaaaat ggagcaaagt ggtaggtact ttttatgaag
     1081 atggcacggt cttccccctt ttccatatcc ctaagacttc tcaagtaaga ggctggcgtg
     1141 gcgttgcttt tggcctggcg cacgggagcc ctgtcttagc tgagacctgg ggttgtcagc
     1201 tctctcctgt gtccggcagc ctctgcctcg cctttagccc ctcccaagct cgctggggtg
     1261 gcttttgtgg ccacactgtc caaaaataca ggtacccaat agctgcccat ttcttgagcc
     1321 ccatcttcac ccaggcccct gttggtccgt ccagcttgcc agtgctgcag agagtctcaa
     1381 gcctcgaggt gccttcttca gggcctggct gaagaagaca gccagtggac agcctgctct
     1441 cgactagctg ggccagaggg tcagaaaccc agaagccctt actccttgcc ctggggatcg
     1501 aagctctgct ttctccccac tgagacttgc cttcctcgtc cttgtggctg tggggactga
     1561 gtctgcggct gtgagcgtgc cctgtgagct ttgttcgaag gcagacaaag gagaaatgat
     1621 gagagtgaaa ttgagcaaga gctatttggg gcaagtgggc ttcaaatcgc ggtggtgcct
     1681 cagagctacc tgcctgcgtc ctcagcgaca ccgctgttca tgcagggagc agatgccaat
     1741 gtgctgatcg gtgtgtgttg gtgctgagag tagacgtgtg gccccatctc gcgttctcct
     1801 agctcctcag aggggcctcc ctgctgcagg atgtctgttt gctggtggtc tggtctgggt
     1861 cctgaaactg aatcgacaac aaactctgtc ctatgaattc ctggcatttg ggattctgct
     1921 tgacttcagg tatttgtggg atctctaggt cttgatatga cccaggatct agccccactt
     1981 ctagggcctg gagagcccag tgagcgacca ggccctggcg gagacccaaa cacatcgaca
     2041 ttcacttagc agaaccttcg gcatccctga gcgcacaaat tttggtcatc cagggtgtgt
     2101 atgggaggct ggcgtgacac ggtaggagtg ctcccctcca gaagctgtac atgacatttt
     2161 tgtaaatcaa atccttatct tcacctttta aagaaatact gccacgagtc ccttggtaaa
     2221 gtggagaatc cttttgtaga gtggactgct gccccctcat tgatctcccg tgtcgatcca
     2281 gatggtggga catggttttc ttaaggtgac gcctgcctgt gacccatatc ccaagcccct
     2341 ggaacaaact gcacacgagt cctacatacc tgtcactgtg ccctcaagtc accccagccg
     2401 gctctgacca ggctctgcct ttgaggtcag aggggaaaca atgctctgac tttgccccgt
     2461 ccatagcaaa cgttgaggaa ccatcgctgc ggctgtcggg aaaggcgctc acaccttatg
     2521 ggctccagcc tggtggctcg ccttcgccat ggcaggacct tggggacagc cacatgtcca
     2581 tggggaatga tccctgctct cctccccttc cttttaagtt gtgcgaggag aggtccagtt
     2641 tgtgggggtg ggagcaacat ggttaaccct tgtagcgctc tctctgtccc atttcagcgc
     2701 ccccccccca gtcatatttt gatgaacatt aggattcgtt cctttctgat acttggaagc
     2761 tcctgtgaaa aatcccatct gtctaaagat ggagcacctg ttctaggtcc taaggctgtg
     2821 tttgcttccg gtgggttaat ttgacctggg agtgaaaagt ggccacggtg agcataggtg
     2881 gatgggtttt aggagatgga tcacacgttc tttgaggaac tccagctact ggcttcctct
     2941 tctctcagac ttgcagtgtg acctggaaaa gttctctctc tgaaagtcaa tttctcataa
     3001 atacgctagc ttggcctgtc tcctagggct gtggtgtgga ctgaatggaa tcgtgaaagt
     3061 agaagcattt tgagaccgta cggaactctg tcccccacta tcattcctgc aatggggttt
     3121 cccaccctga gtccgggacc taggcagtgg gccagtctgc ctgtctgcat agcatttggg
     3181 taatttaggt tctaaaccac tttatcctga gttatctagg ttatccttat ctctccagat
     3241 tgacctcatt tcagtctcat tccaaagcaa ggcacaggag ggagactaga aaagagagat
     3301 gggaacagag gcagaatatg taaaaagtac tacagctacc cgagacaggc ctgggtaggg
     3361 gtgggcaaag cttcgtgtct ttgttaagta ctagaaaaga tccataattt tcactttcct
     3421 ttccagcacc tccccccacc atactcttct ccttcctctg cctcctcttc acccatgaac
     3481 attctccatc catgaataat atctgtacaa aaaggaaaaa atgtaaagaa aacatgagga
     3541 ggacaaagat gattgttaat gactggaggg aatcacgtct tttaagacaa attcgttttc
     3601 ttttatttgt agtggcaaac gacaagatgg tacaaccttt atccttttcc gaaagcaaaa
     3661 caaagggcac agcatcggta gtcagccgac aactgtctcg gcctttgggg gtggtcgtgt
     3721 cgtacttgtg atgtcaatgg tacgtggccc ccgccgaagg cttgcccccc agcccatgta
     3781 catagcgcat cgttcctgcg ggcgggccca gcactttccg tcaatgttgt actgtacgtg
     3841 atgcattgcg ttggtctctg catttttctg cagaagagga gtaaccgctc caggtacctt
     3901 gacctttgta cagcccagag gccaacactg tgggcgtgtg actctttagc gacaaaaccc
     3961 atgtggtgat gatgtgtgta tatatataag gatatattgg gaagatttct aaataaaagt
     4021 ttta
//
LOCUS       XM_032604974             936 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Parkinsonism associated deglycase
            (PARK7), transcript variant X1, mRNA.
ACCESSION   XM_032604974
VERSION     XM_032604974.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..936
                     /gene="PARK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 2 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739967"
     CDS             158..727
                     /gene="PARK7"
                     /codon_start=1
                     /product="protein/nucleic acid deglycase DJ-1"
                     /protein_id="XP_032460865.1"
                     /db_xref="GeneID:116739967"
                     /translation="MASKRALVILATGAEEMETVIPVDVMRRAGIKVTIAGLTGKDPV
                     QCSRDVVICPDASLEDAKKQGPYDVVVMPGGGLGAQNLSQSSAVKEILKEQEKRKGLI
                     AAICAGPTALLAHEIGFGSKVTTHPLAKDKMMDGNHYSYSENRVERDGLIVTSRGPGT
                     SFEFALAIVEALAGKEVAEQVKAPLVLKD"
     misc_feature    170..709
                     /gene="PARK7"
                     /note="DJ-1 family protein; Region: not_thiJ; TIGR01383"
                     /db_xref="CDD:213612"
     misc_feature    473..475
                     /gene="PARK7"
                     /note="conserved cys residue [active]"
                     /db_xref="CDD:153229"
ORIGIN      
        1 gaccggagcg tggcggcgcg cgtgcgtgcg tcctgggtta gtcccgttct gcctctgtcg
       61 tcctccgggt agaggtgccg ctggaacggg ccgagtctcc gcgtccctgg gaagagaggc
      121 gaggttcagt tacatcttta aaaaatccaa catcaaaatg gcttcaaaaa gagctctggt
      181 catcctggct acaggagcag aggagatgga gacggtcatc cctgtcgatg tcatgagacg
      241 agctggaatt aaggtcacca ttgcaggtct gactggaaaa gacccggtac agtgtagccg
      301 agatgttgtc atttgtcctg atgccagtct agaagatgca aaaaaacagg gaccttacga
      361 tgtggtggtt atgccaggag gtggtctggg cgcacagaat ttatcccagt cctctgctgt
      421 gaaggagata ctgaaggaac aagaaaagag gaagggcctc atcgccgcca tctgtgcggg
      481 acctacggct ctgttggctc atgaaatagg ttttggaagc aaagttacaa cacacccact
      541 tgctaaagac aaaatgatgg acggaaatca ttacagctac tcagagaacc gcgtggaaag
      601 ggacggcctg atcgtcacca gccgggggcc gggaaccagc ttcgagtttg ccctggcgat
      661 tgtcgaggcg ctggccggca aggaggtggc cgaacaagtg aaggccccgc tggttcttaa
      721 agattagagc agagaggttt ggtgatgggt aatccatcct cactgtgttc gctttaaaca
      781 aaagaagtgg gattactgtg cagagacgcc gtcatcacca tcccccctca agtgtggctg
      841 tgacgtgacg gctgcacaga gattcctcaa cctgcacttg tgtccccaca tttctgaacc
      901 ttgattgcag aataaatggg gcatttagca aaacta
//
LOCUS       XM_032604983             928 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Parkinsonism associated deglycase
            (PARK7), transcript variant X2, mRNA.
ACCESSION   XM_032604983
VERSION     XM_032604983.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..928
                     /gene="PARK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739967"
     CDS             150..719
                     /gene="PARK7"
                     /codon_start=1
                     /product="protein/nucleic acid deglycase DJ-1"
                     /protein_id="XP_032460874.1"
                     /db_xref="GeneID:116739967"
                     /translation="MASKRALVILATGAEEMETVIPVDVMRRAGIKVTIAGLTGKDPV
                     QCSRDVVICPDASLEDAKKQGPYDVVVMPGGGLGAQNLSQSSAVKEILKEQEKRKGLI
                     AAICAGPTALLAHEIGFGSKVTTHPLAKDKMMDGNHYSYSENRVERDGLIVTSRGPGT
                     SFEFALAIVEALAGKEVAEQVKAPLVLKD"
     misc_feature    162..701
                     /gene="PARK7"
                     /note="DJ-1 family protein; Region: not_thiJ; TIGR01383"
                     /db_xref="CDD:213612"
     misc_feature    465..467
                     /gene="PARK7"
                     /note="conserved cys residue [active]"
                     /db_xref="CDD:153229"
ORIGIN      
        1 tgagaccgga gcgtggcggc gcgcgtgcgt gcgtcctggg ttagtcccgt tctgcctctg
       61 tcgtcctccg ggtagaggtg ccgctggaac gggccgagtc tccgcgtccc tgggaagaga
      121 gttacatctt taaaaaatcc aacatcaaaa tggcttcaaa aagagctctg gtcatcctgg
      181 ctacaggagc agaggagatg gagacggtca tccctgtcga tgtcatgaga cgagctggaa
      241 ttaaggtcac cattgcaggt ctgactggaa aagacccggt acagtgtagc cgagatgttg
      301 tcatttgtcc tgatgccagt ctagaagatg caaaaaaaca gggaccttac gatgtggtgg
      361 ttatgccagg aggtggtctg ggcgcacaga atttatccca gtcctctgct gtgaaggaga
      421 tactgaagga acaagaaaag aggaagggcc tcatcgccgc catctgtgcg ggacctacgg
      481 ctctgttggc tcatgaaata ggttttggaa gcaaagttac aacacaccca cttgctaaag
      541 acaaaatgat ggacggaaat cattacagct actcagagaa ccgcgtggaa agggacggcc
      601 tgatcgtcac cagccggggg ccgggaacca gcttcgagtt tgccctggcg attgtcgagg
      661 cgctggccgg caaggaggtg gccgaacaag tgaaggcccc gctggttctt aaagattaga
      721 gcagagaggt ttggtgatgg gtaatccatc ctcactgtgt tcgctttaaa caaaagaagt
      781 gggattactg tgcagagacg ccgtcatcac catcccccct caagtgtggc tgtgacgtga
      841 cggctgcaca gagattcctc aacctgcact tgtgtcccca catttctgaa ccttgattgc
      901 agaataaatg gggcatttag caaaacta
//
LOCUS       XM_032604992             931 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Parkinsonism associated deglycase
            (PARK7), transcript variant X3, mRNA.
ACCESSION   XM_032604992
VERSION     XM_032604992.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..931
                     /gene="PARK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739967"
     CDS             153..722
                     /gene="PARK7"
                     /codon_start=1
                     /product="protein/nucleic acid deglycase DJ-1"
                     /protein_id="XP_032460883.1"
                     /db_xref="GeneID:116739967"
                     /translation="MASKRALVILATGAEEMETVIPVDVMRRAGIKVTIAGLTGKDPV
                     QCSRDVVICPDASLEDAKKQGPYDVVVMPGGGLGAQNLSQSSAVKEILKEQEKRKGLI
                     AAICAGPTALLAHEIGFGSKVTTHPLAKDKMMDGNHYSYSENRVERDGLIVTSRGPGT
                     SFEFALAIVEALAGKEVAEQVKAPLVLKD"
     misc_feature    165..704
                     /gene="PARK7"
                     /note="DJ-1 family protein; Region: not_thiJ; TIGR01383"
                     /db_xref="CDD:213612"
     misc_feature    468..470
                     /gene="PARK7"
                     /note="conserved cys residue [active]"
                     /db_xref="CDD:153229"
ORIGIN      
        1 gctgaggagc cgggccggac ggcgcgcgtc tgcgcagtga ggggcaatga gaagccggac
       61 ggcgcgcgcc tgcgcagtga ggggctgaga ccggagcgtg gcggcgcgcg tgcgtgcgtc
      121 ctggttacat ctttaaaaaa tccaacatca aaatggcttc aaaaagagct ctggtcatcc
      181 tggctacagg agcagaggag atggagacgg tcatccctgt cgatgtcatg agacgagctg
      241 gaattaaggt caccattgca ggtctgactg gaaaagaccc ggtacagtgt agccgagatg
      301 ttgtcatttg tcctgatgcc agtctagaag atgcaaaaaa acagggacct tacgatgtgg
      361 tggttatgcc aggaggtggt ctgggcgcac agaatttatc ccagtcctct gctgtgaagg
      421 agatactgaa ggaacaagaa aagaggaagg gcctcatcgc cgccatctgt gcgggaccta
      481 cggctctgtt ggctcatgaa ataggttttg gaagcaaagt tacaacacac ccacttgcta
      541 aagacaaaat gatggacgga aatcattaca gctactcaga gaaccgcgtg gaaagggacg
      601 gcctgatcgt caccagccgg gggccgggaa ccagcttcga gtttgccctg gcgattgtcg
      661 aggcgctggc cggcaaggag gtggccgaac aagtgaaggc cccgctggtt cttaaagatt
      721 agagcagaga ggtttggtga tgggtaatcc atcctcactg tgttcgcttt aaacaaaaga
      781 agtgggatta ctgtgcagag acgccgtcat caccatcccc cctcaagtgt ggctgtgacg
      841 tgacggctgc acagagattc ctcaacctgc acttgtgtcc ccacatttct gaaccttgat
      901 tgcagaataa atggggcatt tagcaaaact a
//
LOCUS       XM_032605000             928 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Parkinsonism associated deglycase
            (PARK7), transcript variant X4, mRNA.
ACCESSION   XM_032605000
VERSION     XM_032605000.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..928
                     /gene="PARK7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116739967"
     CDS             150..719
                     /gene="PARK7"
                     /codon_start=1
                     /product="protein/nucleic acid deglycase DJ-1"
                     /protein_id="XP_032460891.1"
                     /db_xref="GeneID:116739967"
                     /translation="MASKRALVILATGAEEMETVIPVDVMRRAGIKVTIAGLTGKDPV
                     QCSRDVVICPDASLEDAKKQGPYDVVVMPGGGLGAQNLSQSSAVKEILKEQEKRKGLI
                     AAICAGPTALLAHEIGFGSKVTTHPLAKDKMMDGNHYSYSENRVERDGLIVTSRGPGT
                     SFEFALAIVEALAGKEVAEQVKAPLVLKD"
     misc_feature    162..701
                     /gene="PARK7"
                     /note="DJ-1 family protein; Region: not_thiJ; TIGR01383"
                     /db_xref="CDD:213612"
     misc_feature    465..467
                     /gene="PARK7"
                     /note="conserved cys residue [active]"
                     /db_xref="CDD:153229"
ORIGIN      
        1 ccggagcgtg gcggcgcgcg tgcgtgcgtc ctgggttagt cccgttctgc ctctgtcgtc
       61 ctccgggtag aggtgccgct ggaacgggcc gagtctccgc gtccctggga agagaggcga
      121 gttacatctt taaaaaatcc aacatcaaaa tggcttcaaa aagagctctg gtcatcctgg
      181 ctacaggagc agaggagatg gagacggtca tccctgtcga tgtcatgaga cgagctggaa
      241 ttaaggtcac cattgcaggt ctgactggaa aagacccggt acagtgtagc cgagatgttg
      301 tcatttgtcc tgatgccagt ctagaagatg caaaaaaaca gggaccttac gatgtggtgg
      361 ttatgccagg aggtggtctg ggcgcacaga atttatccca gtcctctgct gtgaaggaga
      421 tactgaagga acaagaaaag aggaagggcc tcatcgccgc catctgtgcg ggacctacgg
      481 ctctgttggc tcatgaaata ggttttggaa gcaaagttac aacacaccca cttgctaaag
      541 acaaaatgat ggacggaaat cattacagct actcagagaa ccgcgtggaa agggacggcc
      601 tgatcgtcac cagccggggg ccgggaacca gcttcgagtt tgccctggcg attgtcgagg
      661 cgctggccgg caaggaggtg gccgaacaag tgaaggcccc gctggttctt aaagattaga
      721 gcagagaggt ttggtgatgg gtaatccatc ctcactgtgt tcgctttaaa caaaagaagt
      781 gggattactg tgcagagacg ccgtcatcac catcccccct caagtgtggc tgtgacgtga
      841 cggctgcaca gagattcctc aacctgcact tgtgtcccca catttctgaa ccttgattgc
      901 agaataaatg gggcatttag caaaacta
//
LOCUS       XM_032605013            6881 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nucleoporin 210 like (NUP210L), mRNA.
ACCESSION   XM_032605013
VERSION     XM_032605013.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6881
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6881
                     /gene="NUP210L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 95% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739985"
     CDS             929..6592
                     /gene="NUP210L"
                     /codon_start=1
                     /product="nuclear pore membrane glycoprotein 210-like"
                     /protein_id="XP_032460904.1"
                     /db_xref="GeneID:116739985"
                     /translation="MKAVGSPGPRSDGLFCLPLQCLLLLLLFLLGTLANKLNVPQVLL
                     PFGREPGRVPFLLEAQRGCYTWHSTHHDAVTVEPLYENGTLCSQKAVLIAESTQPIRL
                     SSIILAREIVTDHELRCDVKVDVIDSIEIISRTRELYVDDSPLELMVRALDAEGNTFS
                     SLAGMTFEWSIAQDNESAREELSSKIRILKYSEAEYSPPVYIAEMEKEEKQGDMILVS
                     GIRTGAAVVKVRISEPFYKKVAAALIRLLVLENIFLIPSHDIYLLVGAYIKYRVAKMV
                     QGRMTEVKFPLEHYTLELQNHRVSCNMSLPGKVALLDEKTAMVTAVQLGHANLVFIHK
                     NVHMRSLSGLPSCTIYVVEPGFLGFTVQPGDRWSLEVGQVYVITVEVFDKSSTKVYIS
                     DNLRIMYQFPREYFEEQLTTVNGSYNVVKALKHGVVMINASLTSIIYQNKTIQPIKFP
                     IIHQQEVKIYFPIKLTPNFLAFPHHPMGMLYRYKVQVEGGSGNFTWTSSNETVAMVTT
                     KGVVTTAGQVRGNSTVLARDVQNPFRYGEIKICVLKLNKMKMLPFHADVEIGQIIEIP
                     IAMYHVNKETKEAIAFTDCSHLSLDLNMDKQGVFTLLKEGIQRRGPTHCSSAHIAAKS
                     LGHTLVTVSVTEYEEYLESSATFAAYEPLKALNPVEVALVTWHSVKEMIFEGGPRPWI
                     LEPSRFFLELSMEKTEKIRITQVRLPAQRKQNQYIYRVLCLDLGEQILTFQIGNHPGV
                     LNPSPAVEVVQVRFICAHPASISVSPVYKVPADAQPCPLPQHNKQLIPVSSLRDTVLE
                     LVVFDQHRRKFDNFSSLMLEWKSSNETLAHFENYNSMEMVAKDDGSGQTRLHGQRILK
                     VHQIKGTVLIGVNFVGYSEKESPKELSNLPRSAAVELLLVDDVTVSPENATIYNHPDV
                     KEIFSLVEGSGYFLVNSSEQDIATITYLEAESSVQLVPVHPGFLSLEVYDLCLAFLGP
                     AMAHLTVSDMQELELDLIDKVEIGKTVLVTVRVLGPSKRPFQNKYFRNMELKLQLASA
                     IVTLTLMEKQDEYSENYILRAITIGQTTLVAIARDKMGRKFTSAPRQIEVFPPFRLVP
                     EKMTLIPTNMMQVMSEGGPQPQSIIHFSISNQTVAVVNRRGQVTGKVVGRAVVHGTIQ
                     TVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATEMPVYVMGVTSTQTPFSF
                     SNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVENNFAMVVHTKAAGRTSIKVTVHC
                     MNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPMNSQLKLHTNRVGAAF
                     VSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTVTGVQVAPVT
                     YLRMSSHPKLYTAKGRTLSAFPLGMSLTFIVQFYNSVGEKFHTHNTQLYLALNRDDLL
                     LIGPGNRNYTYMAQAVNRGVTLVRLWDQRHPGMADYIPVSVEHAIEPDTKLTFVGDVI
                     CFSTHLLNQNGEPGMWMISANDNILQTDIVTGVGVARSPGIATIFHDIPGLVKTYREV
                     VIHASSRLTLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGSCTPSQALAITTTLLP
                     ETLMLCHVQFSNTLLDIPASKVFHVHSDFSMEKGVYVCLIKVRPQSEELLQALSTADT
                     SIYGWASLVSERSKNGMQRILIPFIPAFYINQSELVLSHKKDIGELRVLGVDRVLEKL
                     EVFPSSPVLVVSGQRHSSLTRGLAIYPIKVVNFTSLQQMASPVFINISCVLTSQIEAV
                     RVRAMKGKCGTDQCEDSRVLQKLMGSYQIFFTLFAVLAPTAFLFLAYNAFLNKIQTVP
                     VVYVPTLGAPQPGSYTSTRSPPPFMSPQPPPAQRRLQHWLWSTRH"
     misc_feature    4172..4396
                     /gene="NUP210L"
                     /note="Bacterial Ig-like domain (group 2); Region: Big_2;
                     pfam02368"
                     /db_xref="CDD:396788"
ORIGIN      
        1 gggtcagaac tcagctctca gatccctagt tgtgtattct gatgtcagtc atttagtttc
       61 attatctgta aaataaagat aatatgtatt gttagggtaa atgtgaagat tagaaatatt
      121 tatgtgctgg accttaacac tggcatcttc agggtgagct atacatttcc tttataactg
      181 tattgattct tataaatctg gatttattag gctctgctcc ctaaacaatt tcaacaatat
      241 atgacacgga ttacgtactc ctatacattt gtggtttagt aaaccgtcct gagacaggct
      301 tcgagctgat actctgttgg atatttggag aaaacaagtt aatttaacaa gaggtgctct
      361 cagagtattt gcttaacaga caggcagcgt gagtggatag ctttctaagc tgcctgtgag
      421 acgccagtgc ctggcatttt ctgcactctg gccttgaggc tggacatgaa acggacttcc
      481 tagtaaaaat gacagcttcc ttgacaaagt ccagctgttt atactagaga ctggaacatt
      541 ttttccgttt atatgtatgg gccgatgctg actggaaatt attgccaaaa aaaggggggg
      601 gcagggagtt gctctaggag ccaaacgtag taggcaacag aaggagaaat ttagctgtga
      661 gagactattt ttttagactg ctctgcttgt tctttactat taaaaaaatc tgccactcaa
      721 tatttaagaa agtagccctt taagtgggta gctgggtatg tgccttaaag tttccataac
      781 ggcttgctgg agcgcttcat aaaaacattc ccataattcc ccacagaacg aaggcccgcc
      841 tcctgatgac gtcacgcctg cggattggct gacggtgggg ctgagggcgc ggctgtagtt
      901 gagcgggaac cgagagctgg cggttgccat gaaggctgtt ggatcacccg ggccccgaag
      961 cgacgggctg ttctgcttgc ctctgcagtg cctcctgttg ctgcttctct ttttgcttgg
     1021 aaccctggcc aacaaactta acgtgccaca ggtgttattg ccctttggcc gggagccagg
     1081 ccgggttcct ttcctgctgg aggcgcagcg gggctgctac acttggcatt ccacccatca
     1141 tgatgcagta actgttgagc ctttatatga aaatggcacc ttatgttccc aaaaagctgt
     1201 gctcattgct gaatctaccc aaccaatacg cctcagcagt attattcttg ctcgagagat
     1261 agtgactgac catgaactgc gctgtgatgt taaggttgat gtgatagaca gcattgaaat
     1321 tatatctcga acccgggaac tctatgtaga tgattcacca ctggaactga tggtgagggc
     1381 attggatgct gaaggaaata cttttagtag tttggcaggg atgacgtttg agtggagcat
     1441 tgcccaggat aatgaatcag caagagaaga actgtctagc aaaattagga ttttgaaata
     1501 ctctgaagca gaatattctc cccctgtata tatagctgag atggaaaagg aagagaaaca
     1561 aggggatatg attttggtgt ctgggattag aactggtgct gctgttgtaa aagttcgaat
     1621 ttctgaaccc ttctataaga aagtggcagc agcattgata cgtctgcttg ttttggagaa
     1681 tatatttctt ataccatccc atgatattta tctcttagta ggagcatata ttaaatatcg
     1741 agttgcaaaa atggttcagg gaagaatgac agaggtgaaa tttcccctgg aacattatac
     1801 actggaattg caaaaccaca gagtttcatg taatatgtct cttcctggga aagtggcttt
     1861 actggatgag aaaacagcca tggtgactgc tgtccaactg ggccacgcta accttgtctt
     1921 tatccataaa aatgtccata tgcgatcttt gtctggactc ccaagttgca ccatatatgt
     1981 tgtagagcct ggatttctag gtttcacagt ccaacctgga gaccgttgga gtctagaggt
     2041 ggggcaggtg tatgttatta cagtagaagt atttgataaa agcagcacaa aagtctatat
     2101 ttcagataat ctcaggatta tgtaccaatt cccaagagag tattttgaag agcagctgac
     2161 tactgtgaat ggatcttaca atgtagtgaa agccctgaaa catggtgtgg tcatgataaa
     2221 tgcatccctg acttccatca tttaccagaa taaaactatt cagcctataa aatttccaat
     2281 tatacatcag caagaagtga agatttattt tcccatcaag cttacaccca actttctggc
     2341 atttcctcat catcccatgg gaatgttata tcgttataaa gtacaggtag agggtggcag
     2401 tggcaatttc acctggacct cttctaatga aacagtggcc atggtaacca ctaaaggagt
     2461 ggtgacgaca gctggtcagg tcagagggaa cagcactgtt ttggcccgag atgtacaaaa
     2521 tccttttcga tatggggaaa ttaagatatg tgttctgaaa ctgaacaaaa tgaaaatgtt
     2581 accatttcat gctgatgtag agattggcca gattatagaa atccccattg ccatgtatca
     2641 tgtaaataaa gaaaccaaag aggccatcgc gttcacagac tgctctcatt tatccttgga
     2701 tttgaacatg gataagcaag gagtcttcac tcttctcaaa gaaggtattc aaagacgagg
     2761 accaacacac tgttccagtg cacatatagc agccaaatct ctgggccata ctttggtaac
     2821 agttagtgtg actgaatatg aagagtattt ggagagcagt gccacatttg ctgcttatga
     2881 acccctaaag gctctaaacc ctgtggaagt ggcactggtg acatggcact ctgtaaagga
     2941 aatgatattt gaagggggcc ctcgtccatg gatcttggag ccctcacgat tctttttgga
     3001 gctgagcatg gagaagacag agaaaattag aataacacaa gtccggctgc cagcccagag
     3061 aaaacagaat cagtacatct atcgggtcct gtgcctggat ttaggggaac aaattctgac
     3121 attccaaatt ggaaatcatc caggtgtcct gaaccctagt ccagctgtag aagttgtgca
     3181 ggtacgcttc atatgtgccc accctgccag catatcagta tctccagtat ataaggtgcc
     3241 agctgatgcc caaccatgtc ctctgccaca gcataacaaa caactgattc ctgtatcaag
     3301 cctgagagac acagtcctgg aactggtagt gtttgatcaa cacagaagaa agtttgataa
     3361 tttcagttca ctgatgctag aatggaaatc ctcaaatgaa acactagctc attttgaaaa
     3421 ttacaattca atggagatgg tagcaaagga tgatggcagt gggcagaccc ggctacatgg
     3481 tcaaaggatc cttaaagtac atcagataaa agggactgta ctcattggag tcaattttgt
     3541 gggctactca gagaaggaaa gtccaaagga actttccaac ttgcccagat ctgcagctgt
     3601 agagctgctc ctggtagatg atgtaacagt atcgcctgag aatgctacca tctataacca
     3661 ccctgatgtg aaggaaatat ttagccttgt ggaaggatct ggttattttt tagtcaacag
     3721 tagtgagcaa gacattgcca ccatcactta cctggaagca gaaagctctg tccagttagt
     3781 tccagtacat ccaggatttc tcagcttgga ggtctatgac ctgtgtttgg ctttcttggg
     3841 tccagcaatg gctcacctca cggtgtcaga catgcaagag ctggagcttg atctgattga
     3901 taaggttgaa ataggtaaaa ctgtgttagt aactgtgagg gttcttggcc cttccaaacg
     3961 cccgttccaa aataaatact tcaggaacat ggagctcaaa ctgcagttgg cttctgccat
     4021 tgtcaccctg acgctaatgg agaaacagga tgaatactct gaaaattata tccttcgagc
     4081 tatcactatt gggcaaacca cacttgtagc tattgccagg gacaagatgg ggagaaaatt
     4141 cacgtcggct cctcggcaaa ttgaagtgtt tcctccattc agacttgttc cagagaaaat
     4201 gacactgatt ccaactaata tgatgcaggt aatgtctgaa ggtggccctc agcctcaatc
     4261 tatcattcac ttctccatca gtaatcagac cgtggctgtt gttaatagga ggggccaagt
     4321 tacagggaag gtagttggca gagctgtggt ccatggcacc atccagacag taaatgaaga
     4381 tactggaaaa gtcattgtgt tttcccagga tgaagtacag attgaagttg tgcagctaag
     4441 ggctgttagg atccttgcag ctgcaactcg actcatcaca gctactgaga tgccagttta
     4501 tgtcatggga gtgaccagta cccagacccc tttctccttc agcaatgcca accctgggct
     4561 cacattccac tggtccatga gcaaaaggga cgtattggat ctagtgccca ggcattcaga
     4621 ggtttttcta caactcccag tagagaataa ctttgccatg gttgtccaca caaaagcagc
     4681 tggtcggacc agtatcaaag tcactgtcca ctgtatgaac agttcctctg ggcagtttga
     4741 ggggaatttg ttggaactgt ctgatgaagt tcagatcctg gtgtttgaaa aactccaact
     4801 tttctaccca gagtgccaac ctgaacaaat tctgatgccc atgaattctc agctcaaact
     4861 ccataccaac agggtagggg ccgcctttgt gagttcccgt gttctcaagt gtttccctaa
     4921 ttcatctgtc attgaggagg acggtgaagg gctcctgaaa gctggttcca ttgcaggtac
     4981 tgctgtgttg gaagtcactt ctatagaacc ttttggagtc aaccaaacaa ctgtaactgg
     5041 ggttcaggta gcaccagtga catacctgcg aatgagcagc caccccaagc tatacacagc
     5101 taaaggaagg accctatcag cctttcccct gggcatgtct ctcaccttca ttgttcagtt
     5161 ttacaatagc gttggagaga aattccacac acacaatacc cagctttatc tggctttgaa
     5221 cagagatgac ctgctgctta ttggaccagg gaataggaac tatacttaca tggctcaggc
     5281 tgtgaacaga ggggtgacac ttgtgaggct ctgggaccag agacatcccg gcatggcaga
     5341 ttatattcct gtttctgtag agcacgccat cgagccagac accaagctta cctttgtcgg
     5401 agatgtcatc tgcttcagta ctcacctcct caaccagaat ggtgaacccg ggatgtggat
     5461 gatttccgct aatgacaata ttctacaaac agacattgtc actggggtag gagtggccag
     5521 gagtccagga atagcaacaa tttttcatga cattccagga ctagtgaaaa catatcgaga
     5581 ggtggtgatc catgcatcat caagattaac actcagttat gaccttaaga cttacctcac
     5641 caataccctc aattcaactg tgttcaagct cttcatcacc actggcagaa atggtgtcaa
     5701 tcttaaagga tcctgcaccc caagtcaggc cttggccatt acaacaacac ttcttccaga
     5761 gaccctcatg ctgtgccatg tacagttcag taatacttta ctagacattc cagcaagtaa
     5821 agtctttcat gtccattcag atttcagcat ggagaaaggg gtttatgtct gcctaatcaa
     5881 ggttcgaccc cagtcagagg agctactcca ggccctcagc acggctgaca cctcaatcta
     5941 tggttgggcc tcgcttgtca gtgagcgtag caagaatgga atgcaaagaa tcctcattcc
     6001 tttcatccca gccttttaca tcaatcaatc agaattggtt cttagccaca aaaaagacat
     6061 cggggagcta agggtactgg gagtggacag agttcttgag aaactagagg tcttccccag
     6121 ctccccagtt ctagtggtct ctggccaaag gcactcttcc ctcacacgtg gtctggctat
     6181 ctaccccata aaagtagtca acttcacttc cctccagcag atggcatcac ctgttttcat
     6241 caatatttcc tgtgtgctca ccagtcaaat tgaggctgtg cgagtgagag ctatgaaagg
     6301 caagtgtggt acagatcaat gtgaagattc acgtgtcctc cagaagctca tgggttctta
     6361 ccagattttc tttaccctct ttgcggtgtt ggcaccaaca gctttcctct ttctagcata
     6421 caatgccttc ctaaacaaga tacagacagt tccagttgtt tatgtaccaa ctctaggtgc
     6481 accacaacca ggttcttaca catccacacg ttctccccct cccttcatga gtccacaacc
     6541 cccaccagcg cagcgtcggc tacaacattg gctttggagt acaaggcact aacctctgct
     6601 tggacaagtc cccttaactg cagggggctg gaaatttcta gccctagacc aggagcctag
     6661 cagcaacctc tgcactcata agcctccaaa caagccttct gagaactgta aataaaggat
     6721 cctaagctgt tttgtgttaa agtggtgtgc tggatcgcgt tttaaagatc aactgtcagt
     6781 tcttaattct aagaaaacat aaaagtgaaa gcaagtaccc catttatgta ccattccagt
     6841 ttttaaccaa gctctgcaga tttattcaat aagcctacgg a
//
LOCUS       XM_032605025            2129 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X1, mRNA.
ACCESSION   XM_032605025
VERSION     XM_032605025.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2129
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 mRNAs, 17 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739990"
     CDS             113..859
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X1"
                     /protein_id="XP_032460916.1"
                     /db_xref="GeneID:116739990"
                     /translation="MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ
                     AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDE
                     EKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQ
                     IRLMDQNLKCLSAAEEKYSLKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTID
                     DLEDKLKCTKEEHLCTQRMLDQTLLDLNEM"
     misc_feature    146..850
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 gggtgagttc cggtatttca gggcggagca ggcggaagta gggtgagaag tggctgcaac
       61 gccgagcgga ggaggcagga acccgaaggc aagcaggggc tgggtgggga ccatggccgg
      121 gatcaccacc atcgaggcgg tgaagcgcaa gatccaggtt ctgcagcagc aggccgatga
      181 tgcagaggag agggccgagc gcctccagcg ggaagtggag ggagaaaggc gggcccggga
      241 acaggctgag gctgaggtgg cctccttgaa ccgtaggatc caactggttg aagaagagct
      301 ggaccgcgct caagagcgcc tggccactgc cctgcaaaag ctggaggaag ctgagaaagc
      361 tgctgatgag agtgagagag gtatgaaggt tattgaaaac cgagccttaa aagatgaaga
      421 aaaaatggaa ctccaggaaa tccaactcaa agaagctaag cacattgcag aagaggcaga
      481 taggaagtat gaagaggtgg ctcgtaagtt ggtgattatt gagggagact tggaacgcac
      541 agaggagcga gctgagctgg cagagtcccg ttgccgagag atggatgagc agatcagact
      601 gatggaccag aacctgaagt gtctgagtgc tgccgaagaa aagtactctc taaaagaaga
      661 caaatatgag gaagagataa agattcttac tgataaactc aaggaggcag agacccgtgc
      721 tgagtttgct gagagatcgg tagccaagct ggaaaagaca attgatgatt tggaagataa
      781 actgaaatgc accaaagagg agcacctctg tacacaaagg atgctggacc agactctgct
      841 tgacctgaat gagatgtaga gcaccccagt cccatcctgc cgctgctcct ccctctgacc
      901 cgactccgct gaggccagcc tgcccgaagc tgacctttaa actgagggct gacctttaac
      961 tggaaggctg ctttctcctt tcgccacctc tcccaccccc acccctgtgt ccttttcgcc
     1021 aaactgtctc tgcctctccc cagagattcc atttgggcta gaggctgagc acctttggga
     1081 acaacgttta agggaatgtg agcacaatgc taagtgtctt taaaagcatg ttgtgatgta
     1141 cacattttgt aattaccttt tctgttgttg ttgacgtagc agccatttgt aaaacattcc
     1201 agataattcc atagttctga agcagcagtc taatcccttt ttcacttttg gaaggtaact
     1261 tttcagctta atgcatattg ccctctccgt agaggagggg aaaaggtatg ggcctgcctt
     1321 acagagagcc aaacagccca gaggactccg ttttgggaaa ccttattgct ctgtaaaaag
     1381 tacccgccaa actagaaagg tgattccaga aggagttagc caaaaaaaaa aaaaaaaagg
     1441 cgctgttcag gttttcagct ttacggtatc tttgggcacc ttttttccca ccagaagtga
     1501 ccagatgaaa tcaagatggt gagacctctg agaccaaatc cttgtcccag ctctcccctg
     1561 ttcctagccg ctcacagaat ggatcatgtg ccccttattt tgaggcgacc acttatttgc
     1621 tctcccgcct ccttgaaaga aaggaaagaa aattatgttt taccactgat ttagccatat
     1681 gaaactcatc tcatcaccct tttctgggtc tgaagctgct gtctctaata aaagtgccat
     1741 ctcattgtgc attgtatcag ttagtgctgg ataaatcttg aatagcttat gtacaaaatt
     1801 gtttttaaat tttatattat tttgaaactt tgcttctttg gggttggggc acactggtca
     1861 ccccatctgg ctgtgacagc cctctacagt ctgggctggc agtgtgctga tcttttaatg
     1921 tttctttccc tacccaatcc cccctttttg gtgaggtttc agtgaggtca gttaggtgtg
     1981 catcctacag cttaattggc ttaaaatgta ctcccctttg gtgtggtctc tttgggggcc
     2041 gattgggaga aagaaaaaac aatagtgtaa ctgttttgat actgaacatt gataaatgtc
     2101 tttttgaaat aaagaaccag tccctccaa
//
LOCUS       XM_032605035            2189 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X2, mRNA.
ACCESSION   XM_032605035
VERSION     XM_032605035.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2189
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739990"
     CDS             94..840
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X2"
                     /protein_id="XP_032460926.1"
                     /db_xref="GeneID:116739990"
                     /translation="MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ
                     AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDE
                     EKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQ
                     IRLMDQNLKCLSAAEEKYSLKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTID
                     DLEDELYAQKLKYKAISEELDHALNDMTSI"
     misc_feature    127..831
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 agggcggagc aggcggaagt agggtgagaa gtggctgcaa cgccgagcgg aggaggcagg
       61 aacccgaagg caagcagggg ctgggtgggg accatggccg ggatcaccac catcgaggcg
      121 gtgaagcgca agatccaggt tctgcagcag caggccgatg atgcagagga gagggccgag
      181 cgcctccagc gggaagtgga gggagaaagg cgggcccggg aacaggctga ggctgaggtg
      241 gcctccttga accgtaggat ccaactggtt gaagaagagc tggaccgcgc tcaagagcgc
      301 ctggccactg ccctgcaaaa gctggaggaa gctgagaaag ctgctgatga gagtgagaga
      361 ggtatgaagg ttattgaaaa ccgagcctta aaagatgaag aaaaaatgga actccaggaa
      421 atccaactca aagaagctaa gcacattgca gaagaggcag ataggaagta tgaagaggtg
      481 gctcgtaagt tggtgattat tgagggagac ttggaacgca cagaggagcg agctgagctg
      541 gcagagtccc gttgccgaga gatggatgag cagatcagac tgatggacca gaacctgaag
      601 tgtctgagtg ctgccgaaga aaagtactct ctaaaagaag acaaatatga ggaagagata
      661 aagattctta ctgataaact caaggaggca gagacccgtg ctgagtttgc tgagagatcg
      721 gtagccaagc tggaaaagac aattgatgat ttggaagatg agctctatgc ccagaaactg
      781 aagtacaagg ccattagcga ggagctggac cacgccctca atgacatgac ctctatataa
      841 actgaaatgc accaaagagg agcacctctg tacacaaagg atgctggacc agactctgct
      901 tgacctgaat gagatgtaga gcaccccagt cccatcctgc cgctgctcct ccctctgacc
      961 cgactccgct gaggccagcc tgcccgaagc tgacctttaa actgagggct gacctttaac
     1021 tggaaggctg ctttctcctt tcgccacctc tcccaccccc acccctgtgt ccttttcgcc
     1081 aaactgtctc tgcctctccc cagagattcc atttgggcta gaggctgagc acctttggga
     1141 acaacgttta agggaatgtg agcacaatgc taagtgtctt taaaagcatg ttgtgatgta
     1201 cacattttgt aattaccttt tctgttgttg ttgacgtagc agccatttgt aaaacattcc
     1261 agataattcc atagttctga agcagcagtc taatcccttt ttcacttttg gaaggtaact
     1321 tttcagctta atgcatattg ccctctccgt agaggagggg aaaaggtatg ggcctgcctt
     1381 acagagagcc aaacagccca gaggactccg ttttgggaaa ccttattgct ctgtaaaaag
     1441 tacccgccaa actagaaagg tgattccaga aggagttagc caaaaaaaaa aaaaaaaagg
     1501 cgctgttcag gttttcagct ttacggtatc tttgggcacc ttttttccca ccagaagtga
     1561 ccagatgaaa tcaagatggt gagacctctg agaccaaatc cttgtcccag ctctcccctg
     1621 ttcctagccg ctcacagaat ggatcatgtg ccccttattt tgaggcgacc acttatttgc
     1681 tctcccgcct ccttgaaaga aaggaaagaa aattatgttt taccactgat ttagccatat
     1741 gaaactcatc tcatcaccct tttctgggtc tgaagctgct gtctctaata aaagtgccat
     1801 ctcattgtgc attgtatcag ttagtgctgg ataaatcttg aatagcttat gtacaaaatt
     1861 gtttttaaat tttatattat tttgaaactt tgcttctttg gggttggggc acactggtca
     1921 ccccatctgg ctgtgacagc cctctacagt ctgggctggc agtgtgctga tcttttaatg
     1981 tttctttccc tacccaatcc cccctttttg gtgaggtttc agtgaggtca gttaggtgtg
     2041 catcctacag cttaattggc ttaaaatgta ctcccctttg gtgtggtctc tttgggggcc
     2101 gattgggaga aagaaaaaac aatagtgtaa ctgttttgat actgaacatt gataaatgtc
     2161 tttttgaaat aaagaaccag tccctccaa
//
LOCUS       XM_032605043            2110 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X3, mRNA.
ACCESSION   XM_032605043
VERSION     XM_032605043.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2110
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739990"
     CDS             94..840
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X3"
                     /protein_id="XP_032460934.1"
                     /db_xref="GeneID:116739990"
                     /translation="MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ
                     AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDE
                     EKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEE
                     LKNVTNNLKSLEAQAEKYSLKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTID
                     DLEDKLKCTKEEHLCTQRMLDQTLLDLNEM"
     misc_feature    127..831
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 agggcggagc aggcggaagt agggtgagaa gtggctgcaa cgccgagcgg aggaggcagg
       61 aacccgaagg caagcagggg ctgggtgggg accatggccg ggatcaccac catcgaggcg
      121 gtgaagcgca agatccaggt tctgcagcag caggccgatg atgcagagga gagggccgag
      181 cgcctccagc gggaagtgga gggagaaagg cgggcccggg aacaggctga ggctgaggtg
      241 gcctccttga accgtaggat ccaactggtt gaagaagagc tggaccgcgc tcaagagcgc
      301 ctggccactg ccctgcaaaa gctggaggaa gctgagaaag ctgctgatga gagtgagaga
      361 ggtatgaagg ttattgaaaa ccgagcctta aaagatgaag aaaaaatgga actccaggaa
      421 atccaactca aagaagctaa gcacattgca gaagaggcag ataggaagta tgaagaggtg
      481 gctcgtaagt tggtgattat tgagggagac ttggaacgca cagaggagcg agctgagctg
      541 gcagagtcta agtgttctga gctggaggag gagctgaaga atgtcaccaa caacctcaag
      601 tctcttgagg ctcaggcgga gaagtactct ctaaaagaag acaaatatga ggaagagata
      661 aagattctta ctgataaact caaggaggca gagacccgtg ctgagtttgc tgagagatcg
      721 gtagccaagc tggaaaagac aattgatgat ttggaagata aactgaaatg caccaaagag
      781 gagcacctct gtacacaaag gatgctggac cagactctgc ttgacctgaa tgagatgtag
      841 agcaccccag tcccatcctg ccgctgctcc tccctctgac ccgactccgc tgaggccagc
      901 ctgcccgaag ctgaccttta aactgagggc tgacctttaa ctggaaggct gctttctcct
      961 ttcgccacct ctcccacccc cacccctgtg tccttttcgc caaactgtct ctgcctctcc
     1021 ccagagattc catttgggct agaggctgag cacctttggg aacaacgttt aagggaatgt
     1081 gagcacaatg ctaagtgtct ttaaaagcat gttgtgatgt acacattttg taattacctt
     1141 ttctgttgtt gttgacgtag cagccatttg taaaacattc cagataattc catagttctg
     1201 aagcagcagt ctaatccctt tttcactttt ggaaggtaac ttttcagctt aatgcatatt
     1261 gccctctccg tagaggaggg gaaaaggtat gggcctgcct tacagagagc caaacagccc
     1321 agaggactcc gttttgggaa accttattgc tctgtaaaaa gtacccgcca aactagaaag
     1381 gtgattccag aaggagttag ccaaaaaaaa aaaaaaaaag gcgctgttca ggttttcagc
     1441 tttacggtat ctttgggcac cttttttccc accagaagtg accagatgaa atcaagatgg
     1501 tgagacctct gagaccaaat ccttgtccca gctctcccct gttcctagcc gctcacagaa
     1561 tggatcatgt gccccttatt ttgaggcgac cacttatttg ctctcccgcc tccttgaaag
     1621 aaaggaaaga aaattatgtt ttaccactga tttagccata tgaaactcat ctcatcaccc
     1681 ttttctgggt ctgaagctgc tgtctctaat aaaagtgcca tctcattgtg cattgtatca
     1741 gttagtgctg gataaatctt gaatagctta tgtacaaaat tgtttttaaa ttttatatta
     1801 ttttgaaact ttgcttcttt ggggttgggg cacactggtc accccatctg gctgtgacag
     1861 ccctctacag tctgggctgg cagtgtgctg atcttttaat gtttctttcc ctacccaatc
     1921 cccccttttt ggtgaggttt cagtgaggtc agttaggtgt gcatcctaca gcttaattgg
     1981 cttaaaatgt actccccttt ggtgtggtct ctttgggggc cgattgggag aaagaaaaaa
     2041 caatagtgta actgttttga tactgaacat tgataaatgt ctttttgaaa taaagaacca
     2101 gtccctccaa
//
LOCUS       XM_032605052            2189 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X4, mRNA.
ACCESSION   XM_032605052
VERSION     XM_032605052.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2189
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116739990"
     CDS             94..840
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X4"
                     /protein_id="XP_032460943.1"
                     /db_xref="GeneID:116739990"
                     /translation="MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ
                     AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDE
                     EKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEE
                     LKNVTNNLKSLEAQAEKYSLKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTID
                     DLEDELYAQKLKYKAISEELDHALNDMTSI"
     misc_feature    127..831
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 agggcggagc aggcggaagt agggtgagaa gtggctgcaa cgccgagcgg aggaggcagg
       61 aacccgaagg caagcagggg ctgggtgggg accatggccg ggatcaccac catcgaggcg
      121 gtgaagcgca agatccaggt tctgcagcag caggccgatg atgcagagga gagggccgag
      181 cgcctccagc gggaagtgga gggagaaagg cgggcccggg aacaggctga ggctgaggtg
      241 gcctccttga accgtaggat ccaactggtt gaagaagagc tggaccgcgc tcaagagcgc
      301 ctggccactg ccctgcaaaa gctggaggaa gctgagaaag ctgctgatga gagtgagaga
      361 ggtatgaagg ttattgaaaa ccgagcctta aaagatgaag aaaaaatgga actccaggaa
      421 atccaactca aagaagctaa gcacattgca gaagaggcag ataggaagta tgaagaggtg
      481 gctcgtaagt tggtgattat tgagggagac ttggaacgca cagaggagcg agctgagctg
      541 gcagagtcta agtgttctga gctggaggag gagctgaaga atgtcaccaa caacctcaag
      601 tctcttgagg ctcaggcgga gaagtactct ctaaaagaag acaaatatga ggaagagata
      661 aagattctta ctgataaact caaggaggca gagacccgtg ctgagtttgc tgagagatcg
      721 gtagccaagc tggaaaagac aattgatgat ttggaagatg agctctatgc ccagaaactg
      781 aagtacaagg ccattagcga ggagctggac cacgccctca atgacatgac ctctatataa
      841 actgaaatgc accaaagagg agcacctctg tacacaaagg atgctggacc agactctgct
      901 tgacctgaat gagatgtaga gcaccccagt cccatcctgc cgctgctcct ccctctgacc
      961 cgactccgct gaggccagcc tgcccgaagc tgacctttaa actgagggct gacctttaac
     1021 tggaaggctg ctttctcctt tcgccacctc tcccaccccc acccctgtgt ccttttcgcc
     1081 aaactgtctc tgcctctccc cagagattcc atttgggcta gaggctgagc acctttggga
     1141 acaacgttta agggaatgtg agcacaatgc taagtgtctt taaaagcatg ttgtgatgta
     1201 cacattttgt aattaccttt tctgttgttg ttgacgtagc agccatttgt aaaacattcc
     1261 agataattcc atagttctga agcagcagtc taatcccttt ttcacttttg gaaggtaact
     1321 tttcagctta atgcatattg ccctctccgt agaggagggg aaaaggtatg ggcctgcctt
     1381 acagagagcc aaacagccca gaggactccg ttttgggaaa ccttattgct ctgtaaaaag
     1441 tacccgccaa actagaaagg tgattccaga aggagttagc caaaaaaaaa aaaaaaaagg
     1501 cgctgttcag gttttcagct ttacggtatc tttgggcacc ttttttccca ccagaagtga
     1561 ccagatgaaa tcaagatggt gagacctctg agaccaaatc cttgtcccag ctctcccctg
     1621 ttcctagccg ctcacagaat ggatcatgtg ccccttattt tgaggcgacc acttatttgc
     1681 tctcccgcct ccttgaaaga aaggaaagaa aattatgttt taccactgat ttagccatat
     1741 gaaactcatc tcatcaccct tttctgggtc tgaagctgct gtctctaata aaagtgccat
     1801 ctcattgtgc attgtatcag ttagtgctgg ataaatcttg aatagcttat gtacaaaatt
     1861 gtttttaaat tttatattat tttgaaactt tgcttctttg gggttggggc acactggtca
     1921 ccccatctgg ctgtgacagc cctctacagt ctgggctggc agtgtgctga tcttttaatg
     1981 tttctttccc tacccaatcc cccctttttg gtgaggtttc agtgaggtca gttaggtgtg
     2041 catcctacag cttaattggc ttaaaatgta ctcccctttg gtgtggtctc tttgggggcc
     2101 gattgggaga aagaaaaaac aatagtgtaa ctgttttgat actgaacatt gataaatgtc
     2161 tttttgaaat aaagaaccag tccctccaa
//
LOCUS       XM_032605061            1838 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X5, mRNA.
ACCESSION   XM_032605061
VERSION     XM_032605061.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1838
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 3 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116739990"
     CDS             94..777
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X5"
                     /protein_id="XP_032460952.1"
                     /db_xref="GeneID:116739990"
                     /translation="MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ
                     AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDE
                     EKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQ
                     IRLMDQNLKCLSAAEEKYSLKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTID
                     DLEGMEPGG"
     misc_feature    127..756
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 agggcggagc aggcggaagt agggtgagaa gtggctgcaa cgccgagcgg aggaggcagg
       61 aacccgaagg caagcagggg ctgggtgggg accatggccg ggatcaccac catcgaggcg
      121 gtgaagcgca agatccaggt tctgcagcag caggccgatg atgcagagga gagggccgag
      181 cgcctccagc gggaagtgga gggagaaagg cgggcccggg aacaggctga ggctgaggtg
      241 gcctccttga accgtaggat ccaactggtt gaagaagagc tggaccgcgc tcaagagcgc
      301 ctggccactg ccctgcaaaa gctggaggaa gctgagaaag ctgctgatga gagtgagaga
      361 ggtatgaagg ttattgaaaa ccgagcctta aaagatgaag aaaaaatgga actccaggaa
      421 atccaactca aagaagctaa gcacattgca gaagaggcag ataggaagta tgaagaggtg
      481 gctcgtaagt tggtgattat tgagggagac ttggaacgca cagaggagcg agctgagctg
      541 gcagagtccc gttgccgaga gatggatgag cagatcagac tgatggacca gaacctgaag
      601 tgtctgagtg ctgccgaaga aaagtactct ctaaaagaag acaaatatga ggaagagata
      661 aagattctta ctgataaact caaggaggca gagacccgtg ctgagtttgc tgagagatcg
      721 gtagccaagc tggaaaagac aattgatgat ttggaaggta tggagcctgg aggctgagca
      781 cctttgggaa caacgtttaa gggaatgtga gcacaatgct aagtgtcttt aaaagcatgt
      841 tgtgatgtac acattttgta attacctttt ctgttgttgt tgacgtagca gccatttgta
      901 aaacattcca gataattcca tagttctgaa gcagcagtct aatccctttt tcacttttgg
      961 aaggtaactt ttcagcttaa tgcatattgc cctctccgta gaggagggga aaaggtatgg
     1021 gcctgcctta cagagagcca aacagcccag aggactccgt tttgggaaac cttattgctc
     1081 tgtaaaaagt acccgccaaa ctagaaaggt gattccagaa ggagttagcc aaaaaaaaaa
     1141 aaaaaaaggc gctgttcagg ttttcagctt tacggtatct ttgggcacct tttttcccac
     1201 cagaagtgac cagatgaaat caagatggtg agacctctga gaccaaatcc ttgtcccagc
     1261 tctcccctgt tcctagccgc tcacagaatg gatcatgtgc cccttatttt gaggcgacca
     1321 cttatttgct ctcccgcctc cttgaaagaa aggaaagaaa attatgtttt accactgatt
     1381 tagccatatg aaactcatct catcaccctt ttctgggtct gaagctgctg tctctaataa
     1441 aagtgccatc tcattgtgca ttgtatcagt tagtgctgga taaatcttga atagcttatg
     1501 tacaaaattg tttttaaatt ttatattatt ttgaaacttt gcttctttgg ggttggggca
     1561 cactggtcac cccatctggc tgtgacagcc ctctacagtc tgggctggca gtgtgctgat
     1621 cttttaatgt ttctttccct acccaatccc ccctttttgg tgaggtttca gtgaggtcag
     1681 ttaggtgtgc atcctacagc ttaattggct taaaatgtac tcccctttgg tgtggtctct
     1741 ttgggggccg attgggagaa agaaaaaaca atagtgtaac tgttttgata ctgaacattg
     1801 ataaatgtct ttttgaaata aagaaccagt ccctccaa
//
LOCUS       XM_032605071            1937 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X6, mRNA.
ACCESSION   XM_032605071
VERSION     XM_032605071.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1937
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 3
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739990"
     CDS             191..667
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X6"
                     /protein_id="XP_032460962.1"
                     /db_xref="GeneID:116739990"
                     /translation="MKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLV
                     IIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSLKEDKYEEEIKIL
                     TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM"
     misc_feature    <191..658
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 gagttccggt atttcagggc ggagcaggcg gaagtagggt gagaagtggc tgcaacgccg
       61 agcggaggag gcaggaaccc gaaggatcca actggttgaa gaagagctgg accgcgctca
      121 agagcgcctg gccactgccc tgcaaaagct ggaggaagct gagaaagctg ctgatgagag
      181 tgagagaggt atgaaggtta ttgaaaaccg agccttaaaa gatgaagaaa aaatggaact
      241 ccaggaaatc caactcaaag aagctaagca cattgcagaa gaggcagata ggaagtatga
      301 agaggtggct cgtaagttgg tgattattga gggagacttg gaacgcacag aggagcgagc
      361 tgagctggca gagtcccgtt gccgagagat ggatgagcag atcagactga tggaccagaa
      421 cctgaagtgt ctgagtgctg ccgaagaaaa gtactctcta aaagaagaca aatatgagga
      481 agagataaag attcttactg ataaactcaa ggaggcagag acccgtgctg agtttgctga
      541 gagatcggta gccaagctgg aaaagacaat tgatgatttg gaagataaac tgaaatgcac
      601 caaagaggag cacctctgta cacaaaggat gctggaccag actctgcttg acctgaatga
      661 gatgtagagc accccagtcc catcctgccg ctgctcctcc ctctgacccg actccgctga
      721 ggccagcctg cccgaagctg acctttaaac tgagggctga cctttaactg gaaggctgct
      781 ttctcctttc gccacctctc ccacccccac ccctgtgtcc ttttcgccaa actgtctctg
      841 cctctcccca gagattccat ttgggctaga ggctgagcac ctttgggaac aacgtttaag
      901 ggaatgtgag cacaatgcta agtgtcttta aaagcatgtt gtgatgtaca cattttgtaa
      961 ttaccttttc tgttgttgtt gacgtagcag ccatttgtaa aacattccag ataattccat
     1021 agttctgaag cagcagtcta atcccttttt cacttttgga aggtaacttt tcagcttaat
     1081 gcatattgcc ctctccgtag aggaggggaa aaggtatggg cctgccttac agagagccaa
     1141 acagcccaga ggactccgtt ttgggaaacc ttattgctct gtaaaaagta cccgccaaac
     1201 tagaaaggtg attccagaag gagttagcca aaaaaaaaaa aaaaaaggcg ctgttcaggt
     1261 tttcagcttt acggtatctt tgggcacctt ttttcccacc agaagtgacc agatgaaatc
     1321 aagatggtga gacctctgag accaaatcct tgtcccagct ctcccctgtt cctagccgct
     1381 cacagaatgg atcatgtgcc ccttattttg aggcgaccac ttatttgctc tcccgcctcc
     1441 ttgaaagaaa ggaaagaaaa ttatgtttta ccactgattt agccatatga aactcatctc
     1501 atcacccttt tctgggtctg aagctgctgt ctctaataaa agtgccatct cattgtgcat
     1561 tgtatcagtt agtgctggat aaatcttgaa tagcttatgt acaaaattgt ttttaaattt
     1621 tatattattt tgaaactttg cttctttggg gttggggcac actggtcacc ccatctggct
     1681 gtgacagccc tctacagtct gggctggcag tgtgctgatc ttttaatgtt tctttcccta
     1741 cccaatcccc cctttttggt gaggtttcag tgaggtcagt taggtgtgca tcctacagct
     1801 taattggctt aaaatgtact cccctttggt gtggtctctt tgggggccga ttgggagaaa
     1861 gaaaaaacaa tagtgtaact gttttgatac tgaacattga taaatgtctt tttgaaataa
     1921 agaaccagtc cctccaa
//
LOCUS       XM_032605082             852 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X7, mRNA.
ACCESSION   XM_032605082
VERSION     XM_032605082.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..852
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739990"
     CDS             94..837
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X7"
                     /protein_id="XP_032460973.1"
                     /db_xref="GeneID:116739990"
                     /translation="MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ
                     AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDE
                     EKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEE
                     LKNVTNNLKSLEAQAEKYSLKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTID
                     DLEERLYSQLERNRLLSNELKLTLHDLCD"
     misc_feature    127..828
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 agggcggagc aggcggaagt agggtgagaa gtggctgcaa cgccgagcgg aggaggcagg
       61 aacccgaagg caagcagggg ctgggtgggg accatggccg ggatcaccac catcgaggcg
      121 gtgaagcgca agatccaggt tctgcagcag caggccgatg atgcagagga gagggccgag
      181 cgcctccagc gggaagtgga gggagaaagg cgggcccggg aacaggctga ggctgaggtg
      241 gcctccttga accgtaggat ccaactggtt gaagaagagc tggaccgcgc tcaagagcgc
      301 ctggccactg ccctgcaaaa gctggaggaa gctgagaaag ctgctgatga gagtgagaga
      361 ggtatgaagg ttattgaaaa ccgagcctta aaagatgaag aaaaaatgga actccaggaa
      421 atccaactca aagaagctaa gcacattgca gaagaggcag ataggaagta tgaagaggtg
      481 gctcgtaagt tggtgattat tgagggagac ttggaacgca cagaggagcg agctgagctg
      541 gcagagtcta agtgttctga gctggaggag gagctgaaga atgtcaccaa caacctcaag
      601 tctcttgagg ctcaggcgga gaagtactct ctaaaagaag acaaatatga ggaagagata
      661 aagattctta ctgataaact caaggaggca gagacccgtg ctgagtttgc tgagagatcg
      721 gtagccaagc tggaaaagac aattgatgat ttggaagagc gtctctacag ccaacttgag
      781 cgaaaccgcc tgctttctaa tgagctgaag ctaacgctgc atgatctgtg tgactgatgg
      841 gcagggctca ct
//
LOCUS       XM_032605091             852 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X8, mRNA.
ACCESSION   XM_032605091
VERSION     XM_032605091.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..852
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116739990"
     CDS             94..837
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X8"
                     /protein_id="XP_032460982.1"
                     /db_xref="GeneID:116739990"
                     /translation="MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ
                     AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDE
                     EKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQ
                     IRLMDQNLKCLSAAEEKYSLKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTID
                     DLEERLYSQLERNRLLSNELKLTLHDLCD"
     misc_feature    127..828
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 agggcggagc aggcggaagt agggtgagaa gtggctgcaa cgccgagcgg aggaggcagg
       61 aacccgaagg caagcagggg ctgggtgggg accatggccg ggatcaccac catcgaggcg
      121 gtgaagcgca agatccaggt tctgcagcag caggccgatg atgcagagga gagggccgag
      181 cgcctccagc gggaagtgga gggagaaagg cgggcccggg aacaggctga ggctgaggtg
      241 gcctccttga accgtaggat ccaactggtt gaagaagagc tggaccgcgc tcaagagcgc
      301 ctggccactg ccctgcaaaa gctggaggaa gctgagaaag ctgctgatga gagtgagaga
      361 ggtatgaagg ttattgaaaa ccgagcctta aaagatgaag aaaaaatgga actccaggaa
      421 atccaactca aagaagctaa gcacattgca gaagaggcag ataggaagta tgaagaggtg
      481 gctcgtaagt tggtgattat tgagggagac ttggaacgca cagaggagcg agctgagctg
      541 gcagagtccc gttgccgaga gatggatgag cagatcagac tgatggacca gaacctgaag
      601 tgtctgagtg ctgccgaaga aaagtactct ctaaaagaag acaaatatga ggaagagata
      661 aagattctta ctgataaact caaggaggca gagacccgtg ctgagtttgc tgagagatcg
      721 gtagccaagc tggaaaagac aattgatgat ttggaagagc gtctctacag ccaacttgag
      781 cgaaaccgcc tgctttctaa tgagctgaag ctaacgctgc atgatctgtg tgactgatgg
      841 gcagggctca ct
//
LOCUS       XM_032605100            1819 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin 3 (TPM3), transcript variant
            X9, mRNA.
ACCESSION   XM_032605100
VERSION     XM_032605100.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1819
                     /gene="TPM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 4
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116739990"
     CDS             1..549
                     /gene="TPM3"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain isoform X9"
                     /protein_id="XP_032460991.1"
                     /db_xref="GeneID:116739990"
                     /translation="MMQRRGPSASSGKWREKGGPGNRGMKVIENRALKDEEKMELQEI
                     QLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNL
                     KCLSAAEEKYSLKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKC
                     TKEEHLCTQRMLDQTLLDLNEM"
     misc_feature    <67..540
                     /gene="TPM3"
                     /note="Region: Tropomyosin; pfam00261"
                     /db_xref="CDD:459736"
ORIGIN      
        1 atgatgcaga ggagagggcc gagcgcctcc agcgggaagt ggagggagaa aggcgggccc
       61 gggaacagag gtatgaaggt tattgaaaac cgagccttaa aagatgaaga aaaaatggaa
      121 ctccaggaaa tccaactcaa agaagctaag cacattgcag aagaggcaga taggaagtat
      181 gaagaggtgg ctcgtaagtt ggtgattatt gagggagact tggaacgcac agaggagcga
      241 gctgagctgg cagagtcccg ttgccgagag atggatgagc agatcagact gatggaccag
      301 aacctgaagt gtctgagtgc tgccgaagaa aagtactctc taaaagaaga caaatatgag
      361 gaagagataa agattcttac tgataaactc aaggaggcag agacccgtgc tgagtttgct
      421 gagagatcgg tagccaagct ggaaaagaca attgatgatt tggaagataa actgaaatgc
      481 accaaagagg agcacctctg tacacaaagg atgctggacc agactctgct tgacctgaat
      541 gagatgtaga gcaccccagt cccatcctgc cgctgctcct ccctctgacc cgactccgct
      601 gaggccagcc tgcccgaagc tgacctttaa actgagggct gacctttaac tggaaggctg
      661 ctttctcctt tcgccacctc tcccaccccc acccctgtgt ccttttcgcc aaactgtctc
      721 tgcctctccc cagagattcc atttgggcta gaggctgagc acctttggga acaacgttta
      781 agggaatgtg agcacaatgc taagtgtctt taaaagcatg ttgtgatgta cacattttgt
      841 aattaccttt tctgttgttg ttgacgtagc agccatttgt aaaacattcc agataattcc
      901 atagttctga agcagcagtc taatcccttt ttcacttttg gaaggtaact tttcagctta
      961 atgcatattg ccctctccgt agaggagggg aaaaggtatg ggcctgcctt acagagagcc
     1021 aaacagccca gaggactccg ttttgggaaa ccttattgct ctgtaaaaag tacccgccaa
     1081 actagaaagg tgattccaga aggagttagc caaaaaaaaa aaaaaaaagg cgctgttcag
     1141 gttttcagct ttacggtatc tttgggcacc ttttttccca ccagaagtga ccagatgaaa
     1201 tcaagatggt gagacctctg agaccaaatc cttgtcccag ctctcccctg ttcctagccg
     1261 ctcacagaat ggatcatgtg ccccttattt tgaggcgacc acttatttgc tctcccgcct
     1321 ccttgaaaga aaggaaagaa aattatgttt taccactgat ttagccatat gaaactcatc
     1381 tcatcaccct tttctgggtc tgaagctgct gtctctaata aaagtgccat ctcattgtgc
     1441 attgtatcag ttagtgctgg ataaatcttg aatagcttat gtacaaaatt gtttttaaat
     1501 tttatattat tttgaaactt tgcttctttg gggttggggc acactggtca ccccatctgg
     1561 ctgtgacagc cctctacagt ctgggctggc agtgtgctga tcttttaatg tttctttccc
     1621 tacccaatcc cccctttttg gtgaggtttc agtgaggtca gttaggtgtg catcctacag
     1681 cttaattggc ttaaaatgta ctcccctttg gtgtggtctc tttgggggcc gattgggaga
     1741 aagaaaaaac aatagtgtaa ctgttttgat actgaacatt gataaatgtc tttttgaaat
     1801 aaagaaccag tccctccaa
//
LOCUS       XM_032605115             470 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin alpha-3 chain-like
            (LOC116740012), transcript variant X1, mRNA.
ACCESSION   XM_032605115
VERSION     XM_032605115.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..470
                     /gene="LOC116740012"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 62% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740012"
     CDS             86..448
                     /gene="LOC116740012"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain-like isoform X1"
                     /protein_id="XP_032461006.1"
                     /db_xref="GeneID:116740012"
                     /translation="MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELA
                     AMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADVLISCCCTKDLVTVVCNRGFLL
                     TKWRHKISSNSYKRNCKR"
     misc_feature    104..>325
                     /gene="LOC116740012"
                     /note="Tropomyosin like; Region: Tropomyosin_1; pfam12718"
                     /db_xref="CDD:403808"
ORIGIN      
        1 actcagccag cagccccttc tttcttaccc tagtctccag tcctccagtg ttcacaggtg
       61 agctccccaa cagccactgg tcacgatgga ggccatcaag aaaaagatgc agatgctgaa
      121 gttggacaag gagaatgctc tggatcgggc agagcaagct gaagctgagc agaagcaggc
      181 agaagaaaga agtaaacagc tggaagatga gctggcagcc atgcagaaga agctgaaagg
      241 gacagaggat gagctggaca agtattctga agctttgaag gatgcccagg agaagctgga
      301 gctggcagag aagaaagcag ctgatgtgct catatcatgc tgttgcacaa aggatctggt
      361 aacagtagtc tgtaatagag gattccttct gacaaaatgg aggcataaga tatcttccaa
      421 ttcctacaaa aggaattgta agcgatgatt aattaccaag tcctgaatca
//
LOCUS       XM_032605122             355 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tropomyosin alpha-3 chain-like
            (LOC116740012), transcript variant X2, mRNA.
ACCESSION   XM_032605122
VERSION     XM_032605122.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..355
                     /gene="LOC116740012"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 82% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740012"
     CDS             62..355
                     /gene="LOC116740012"
                     /codon_start=1
                     /product="tropomyosin alpha-3 chain-like isoform X2"
                     /protein_id="XP_032461013.1"
                     /db_xref="GeneID:116740012"
                     /translation="MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELA
                     AMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADVSAHIMLLHKGSGNSSL"
     misc_feature    80..>301
                     /gene="LOC116740012"
                     /note="Tropomyosin like; Region: Tropomyosin_1; pfam12718"
                     /db_xref="CDD:403808"
ORIGIN      
        1 ttaccctagt ctccagtcct ccagtgttca caggtgagct ccccaacagc cactggtcac
       61 gatggaggcc atcaagaaaa agatgcagat gctgaagttg gacaaggaga atgctctgga
      121 tcgggcagag caagctgaag ctgagcagaa gcaggcagaa gaaagaagta aacagctgga
      181 agatgagctg gcagccatgc agaagaagct gaaagggaca gaggatgagc tggacaagta
      241 ttctgaagct ttgaaggatg cccaggagaa gctggagctg gcagagaaga aagcagctga
      301 tgtgagtgct catatcatgc tgttgcacaa aggatctggt aacagtagtc tgtaa
//
LOCUS       XM_032605135             399 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ribosomal protein S27 (RPS27), transcript
            variant X1, mRNA.
ACCESSION   XM_032605135
VERSION     XM_032605135.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..399
                     /gene="RPS27"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 41
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740022"
     CDS             86..340
                     /gene="RPS27"
                     /codon_start=1
                     /product="40S ribosomal protein S27"
                     /protein_id="XP_032461026.1"
                     /db_xref="GeneID:116740022"
                     /translation="MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKIT
                     TVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH"
     misc_feature    101..331
                     /gene="RPS27"
                     /note="ribosomal protein S27; Provisional; Region:
                     PLN00209"
                     /db_xref="CDD:165774"
ORIGIN      
        1 cgtcacttcc tgcgggacgg cggatttaag gagcagaatt tccgctttcg ctcctttccg
       61 acggtgacga cctcctcatg agaacatgcc tctcgcaaag gatctccttc atccctctcc
      121 agaagaggag aagaggaaac acaagaagaa gcgcctggtg cagagcccca attcctattt
      181 catggatgtg aaatgcccag gatgctataa aatcaccacc gtctttagcc atgcacaaac
      241 agtagttttg tgtgttggct gctctaccgt cctctgccag cctacaggag gaaaagcaag
      301 gcttacagaa gggtgctctt tcagacggaa gcagcactaa aagcccctgg aatcaggatg
      361 aatgggaaac catccgaata aacacatttt ggatacgtc
//
LOCUS       XR_004345768            1120 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ribosomal protein S27 (RPS27), transcript
            variant X2, misc_RNA.
ACCESSION   XR_004345768
VERSION     XR_004345768.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1120
                     /gene="RPS27"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740022"
     misc_RNA        1..1120
                     /gene="RPS27"
                     /product="ribosomal protein S27, transcript variant X2"
                     /db_xref="GeneID:116740022"
ORIGIN      
        1 cctttccgac ggtgacgacc tcctcatgag aacatgcctc tcgcaaagga tctccttcat
       61 ccctctccag aagaggagaa gaggaaacac aagaagaagc gcctggtgca gagccccaat
      121 tcctatttca tggatgtgaa atgcccagga tgctataaaa tcaccaccgt ctttagccat
      181 gcacaaacag tagttttgtg tgttggctgc tctaccgtcc tctgccagcc tacaggagga
      241 aaagcaaggc ttacagaagg gtgctctttc agacggaagc agcactaaaa gcccctggaa
      301 tcaggatgaa tgggaaacca tccgaataaa cacattttgg atacgtcctg tttattgtct
      361 tgttttactg ctaggaagtt cctacctcac gtattcaggg gcaatcagaa gagtggactg
      421 tagagtcact tggggcaatt tgtgaaataa aatgaaggca gtttccaagt caaaaggcca
      481 cggtgctgaa tataaggact tcttacctag aaagaggaaa gctgttggtg ccaacaccgc
      541 aaagagggta aagaaaatct ggtaagaacc catgagcttc tggaggacac gtgaatcttc
      601 acattgatct acacattggc agaataaaag aagattatag ttatccagga cagatgttgc
      661 atttaaaaac ttgtgtggtc ctaagagtat ctagctgaaa tagttaaaac ccagccctct
      721 aggaaattct tttgcttctt accagataaa aagaggtgaa ctgaacttag ctcctcttac
      781 ctttttttgg ttttttatct ctctaaacag taaattacaa ttcttgagtc ttatttcttt
      841 tcagcttaca aaagaatatt taaattcttt gccactttaa aatgcctgtt acctttcctg
      901 tgcactttaa ttccatgtga ctgctttccg tcaccaagtt tgtgatagtc tatggtgatt
      961 caagttctcc ttttaatccc tctaacctga atgaagtatt ttgttggatc accaataacc
     1021 tcttaaatcc aggggctact tgtccttttt tattcaggta cattctgata tgtttataaa
     1081 cttgtcctca ataaaacttc agacttctgt gtttgaagca
//
LOCUS       XR_004345777             170 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116740029
            (LOC116740029), ncRNA.
ACCESSION   XR_004345777
VERSION     XR_004345777.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..170
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..170
                     /gene="LOC116740029"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116740029"
     ncRNA           1..170
                     /ncRNA_class="lncRNA"
                     /gene="LOC116740029"
                     /product="uncharacterized LOC116740029"
                     /db_xref="GeneID:116740029"
ORIGIN      
        1 ttgcgcagca caggctccgg acgcgcaggc tcagggcttg tggactcagt agttgagaca
       61 cgtgggctta attgccctgt ggcaaggggg atcttaattc ccccaccagg gatcaaagcc
      121 acgtcccctg cattggaagg cagattcttt accactggac caccagagaa
//
LOCUS       XR_004345778             249 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116740034
            (LOC116740034), ncRNA.
ACCESSION   XR_004345778
VERSION     XR_004345778.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..249
                     /gene="LOC116740034"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116740034"
     ncRNA           1..249
                     /ncRNA_class="lncRNA"
                     /gene="LOC116740034"
                     /product="uncharacterized LOC116740034"
                     /db_xref="GeneID:116740034"
ORIGIN      
        1 cctggctcct acctgctgta ctgtcggcac tcccatttgc cacctaggat tatgagcttt
       61 tgtgctggtc tcagcccaag gcacaacctt gttggaacat tttactagct ccaatagttt
      121 acttgaagat tttttggatt gtttcttcag acaatcatat cctctgtgtg aaaaaccccc
      181 accaaacgga tgatattaac tacttgatga ccatgaatac atagccccag gcctcctgga
      241 gcctaagga
//
LOCUS       XM_032605166            5464 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus castor zinc finger 1 (CASZ1), transcript
            variant X1, mRNA.
ACCESSION   XM_032605166
VERSION     XM_032605166.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5464
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5464
                     /gene="CASZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 95% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740036"
     CDS             105..5444
                     /gene="CASZ1"
                     /codon_start=1
                     /product="zinc finger protein castor homolog 1 isoform X1"
                     /protein_id="XP_032461057.1"
                     /db_xref="GeneID:116740036"
                     /translation="MKVDYLSEFGFRLSDYEFGTKERRMDLGTAEGTRCPDPPAGKPA
                     MAAKRKGGLKLNAICAKLSRQVVVEKGAEAEDSPLRPRDKVRSGPESGVARAPRSEED
                     KRRAVIEKWVNGEYSEEPAPTPVLGRTAREGLELPPEGVYMVQPQGCSDEEDHGEEPP
                     KDGSVMEEKESDGAASKDDSGPSAKQASGEASSLRDYAASTMTEFLGMFGYDDQNTRD
                     ELAGKISFEKLHAGSTPEAATSSALPASEDALSKRARFSKYEEYIRKLKAGEQLSWPA
                     HGTTAEGRAGKEALGSLPGLRLPSSTTHLETKATILPLPSHSSVPMQGLVARASKYDF
                     FIQKLKTGENLRPQNGSAYKKPSKYDLENVKYLHLFKPGEGSPDMGGAIAFKTGKVGR
                     PSKYDVRAIQKPGPAKVPPTPSLAPAPLASVPTAPSAPGPGPEPPASLPFNTPEYLKS
                     TFSKTDSITTGTVSTVKNGLPTDKPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYRE
                     HYHCLDPECNYQRFTSKQDVIRHYNMHKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNG
                     KSTHYHCMQVGCNKVYTSTSDVMTHENFHKKNTQLINDGFQRFRATEDCGTADCQFYG
                     QKTTHFHCRRPGCTFTFKNKCDIEKHKSYHIKDDAYAKDGFKKFYKYEECKYEGCVYS
                     KATNHFHCIRAGCGFTFTSTSQMTSHKRKHERRHIRASGSGVLGLPPSLLGAKDTEHE
                     ESSNDDLVDFSALSSKNSSLSASPTSQQSSASLVTATATSEAGPSATKPPNSKISGLL
                     AQGLPGSIPLALALSSSGLPSAAPYFPILPGRGNTSLPVGAPGLMGTMSSGTAASVTP
                     DTPALAASGAGDSAAAAAASVPVPPASIMERISASKGLISPMMARLAAAALKPSATFD
                     PGNGQQATPARFPPAPVKQEPGESAGAPGPHEASQDRSLDLTLKEPSNESNGHAVPAN
                     SSLLSSLMNKMSQGNPSLGSLLNIKTEAEGSPAGESSPFLGKAVKALVQEKLSEPWKV
                     YLRRFGTKDFCNAQCDFLHKAHFHCVVEECGALFSTLDGAIKHANFHFRTEGGAVKGN
                     VEASFPASAAETKPSLAPSSPPAPPITTATASSLEGPTPSLAAVPSSPTLLAWKQLAS
                     TIPQMPQIPASVPHLPTSPLATTSLENAKPQVKPGFLQFQENDPCLATDCKYANKFHF
                     HCLFGNCKYVCKTSGKAESHCLDHINPNNNLVNVRDQFAYYSLQCLCPNQHCEFRMRG
                     HYHCLRTGCYFVTNITTKLPWHIKKHEKAERRAANGFKYFTKREECGRLGCKYNQVNS
                     HFHCIREGCQFSFLLKHQMTSHARKHMRRMLGKNFDRVPSSQGPQSLMDTETDEYMDY
                     TGCSPGAVSSESSTMDRSCSSTPVGNESTAAGNTISMPTASGAKKRFWIIEDMSPFGK
                     RRKTASSRKMLDEGMMLEGFRRFDLYEDCKDAACQFSLKVTHYHCTRENCGYKFCGRT
                     HMYKHAQHHDRVDNLVLDDFKRFKASLSCHFADCPFSGTSTHFHCLRCRFRCTDSTKV
                     TAHRKHHGKQDVISAAGFCQFSSSADCAVADCKYKLKCSHFHCTYPGCRHTVVGMSQM
                     DSHKRKHEKQERGEPPAAASPGAEGPAPGPAASLDCAPPPGAEPAAALLFLPGPGRGP
                     DDAGDPRPPDAPGPRAGPAAPGPAAGESSQEDDEEELELNEEEADDDEDDDDEDDDDD
                     DEDDDDDEDLRTDSEESLSEAAAAAGPGSRSLELAALGAPAPPGPTPAAAASP"
ORIGIN      
        1 aactgttacc ctgagtgtta ccgtcaggag caatgacatc agggctttaa aacaacttgt
       61 tattcgggga gtaatcagtc gcaattaggc attaattaag tattatgaaa gttgattatt
      121 taagtgaatt cggctttcga ctctccgact atgagtttgg gaccaaagag aggagaatgg
      181 atcttggtac agctgaaggc acccggtgcc ccgacccgcc tgcaggcaag cccgcgatgg
      241 cggccaaacg caaaggcggc ctgaagctca acgccatctg cgccaagctg agccgccagg
      301 tggtggtgga gaagggagcg gaggccgagg acagcccact gcggccccgg gacaaagtgc
      361 gcagtggccc tgagtcgggg gtggcccggg ccccccgcag cgaagaggac aagaggcggg
      421 cggtgatcga gaagtgggtg aacggggaat acagcgagga gccggcaccc acgcccgtgc
      481 tggggcggac tgcccgggag ggtctggagc tgccacccga gggcgtctac atggtgcagc
      541 cccagggctg cagcgacgag gaagaccatg gcgaagagcc ccccaaggat ggcagcgtca
      601 tggaggagaa ggaatcggac ggggcagcct ccaaggatga cagtggcccc agtgccaagc
      661 aggcttcagg agaggcctcc tcgctgcggg actacgcggc ctccaccatg accgagttcc
      721 ttggcatgtt tggctatgat gaccagaaca cgagggacga gctggccggg aagatcagct
      781 tcgagaagct gcacgcgggc tccacgccag aggcggccac ctcctccgcg ctgcccgcct
      841 ccgaggacgc cctcagcaag cgggcacggt tctccaagta tgaggagtac atccgcaagc
      901 tcaaggccgg cgagcagctg tcctggccgg cccacggcac cacagccgag gggcgggccg
      961 gcaaggaggc cctgggctcc ctgcctggcc tgcggctgcc cagtagcacc acgcacctgg
     1021 agaccaaggc caccatcctg cccctgccct cacacagcag tgtccccatg cagggcctgg
     1081 tggcccgtgc ctccaagtac gacttcttca tccagaaact gaagacgggt gagaacctgc
     1141 ggccccagaa cgggagcgcc tacaagaagc cgtctaagta cgacctggag aacgtcaagt
     1201 acctgcacct cttcaaaccc ggggagggca gccccgacat gggaggggcc atcgccttca
     1261 agacgggcaa ggtggggcgc ccctccaagt atgacgtccg ggccatccag aagccgggcc
     1321 ccgccaaggt tccgcccacc cccagcctgg ctcctgcacc cctcgccagc gtgcccactg
     1381 ctcccagtgc ccccgggcca ggccctgagc cacctgcctc cctgcctttc aacactcccg
     1441 agtacctgaa gtcaaccttc tccaaaacag actccatcac cacggggacc gtctccactg
     1501 tcaagaacgg attgcccaca gataaaccag ctgtcactga agatgtaaac atttaccaga
     1561 aatatattgc caggttctca ggcagtcagc actgtggcca catccactgc gcctaccagt
     1621 accgcgagca ctaccactgc ctcgaccccg agtgcaacta ccagaggttc acgagcaagc
     1681 aggacgtgat ccggcactac aacatgcaca agaaacggga caactccctg cagcacggct
     1741 tcatgcgctt cagcccgctg gacgactgca gcgtctacta ccacggctgc cacctcaacg
     1801 ggaagagcac ccactaccac tgcatgcagg tgggctgtaa caaggtgtac acgagcacat
     1861 cggacgtgat gacccacgag aacttccata agaagaacac ccagctcatc aacgacggct
     1921 tccagcgctt ccgagccact gaggactgcg gcacggccga ctgccagttc tacgggcaga
     1981 agaccacgca cttccactgc aggcgccccg gctgcacatt cacctttaag aacaagtgtg
     2041 acatcgagaa gcacaagagc taccacatca aggacgacgc ctacgccaag gatggcttca
     2101 agaagttcta caagtacgag gagtgcaagt acgagggctg tgtgtacagc aaggccacca
     2161 accacttcca ctgcatccgc gccggctgcg gcttcacgtt cacctccacc agccagatga
     2221 cctcccacaa gcgcaagcac gagcgccggc acatccgcgc ctcgggctcg ggcgtgctgg
     2281 ggctgccgcc ctcgctgctg ggcgccaagg acacggagca cgaggagtcc agcaacgacg
     2341 acctggttga cttctctgcc ctgagcagca agaactccag cctcagcgcc tcccccacca
     2401 gccagcagtc ctccgcctcc ctggtcaccg ccactgccac ctccgaggct gggcccagtg
     2461 ccaccaagcc ccccaacagc aagatctcgg ggctgctggc ccagggcctg cctggctcca
     2521 tccccctggc gctggccctc tccagctcgg gcctgcccag cgctgcgccc tacttcccca
     2581 tccttccggg ccggggcaac acctccctgc ctgtgggtgc ccccggcctc atgggtacca
     2641 tgtcgtcagg gacagcagcc tcagtaaccc ccgacacacc cgctctggct gcctcgggag
     2701 ctggcgactc ggccgcagcg gcagctgcct ctgtcccggt gccccctgcc tccatcatgg
     2761 agaggatctc tgcgagcaag ggcctcatct cgcccatgat ggcccggctg gctgcggccg
     2821 ccctcaagcc ctctgccacc tttgacccag gaaatgggca gcaggccacc cctgccaggt
     2881 tccccccagc cccggtgaag caggagcccg gtgagagtgc tggcgcccca ggtccccacg
     2941 aggcctccca ggaccgcagt ttagacctga ctctgaagga gcccagtaat gaatcaaatg
     3001 gccacgcagt cccggcaaat tcatctcttt tatcctcgct tatgaataag atgtctcagg
     3061 gcaatcccag cctcggcagc ctgttgaaca tcaagacaga agcggagggg agccccgccg
     3121 gggagtcctc gcccttcctg ggcaaggccg tgaaggcgct ggttcaggag aagctgtcag
     3181 agccctggaa ggtctacctt cgcaggtttg gcaccaagga cttctgcaac gcgcagtgtg
     3241 acttcctcca caaggcccac ttccactgcg tggtggagga gtgcggcgcg cttttcagca
     3301 ccctggacgg ggccatcaag cacgccaact tccacttccg gacagaggga ggagcagtga
     3361 aaggaaatgt ggaggcttcc ttcccggcct cggctgctga gaccaaacct tccttggccc
     3421 cctcatcccc tccagcgcct cccatcacca cggccacggc ttcctctctc gaggggccca
     3481 ctcccagcct ggccgccgtg ccctccagcc ccaccctgct cgcctggaag cagctggctt
     3541 ccaccatacc ccagatgcct cagattccag cgtcagtgcc tcacctgccc acttcgccct
     3601 tggcaacgac ttctctagaa aacgccaagc cccaggtcaa acctggattc ctccagttcc
     3661 aggagaacga tccttgcctc gcaacggact gcaagtatgc caacaagttc cacttccact
     3721 gtctctttgg gaactgcaag tacgtctgca aaacctccgg caaggccgag tcccactgcc
     3781 tggaccacat caatcccaac aacaacctcg tgaacgtgcg agaccagttt gcgtactact
     3841 ccctgcagtg cctctgtccc aaccagcact gcgagttccg gatgcgcggg cactaccact
     3901 gtctcaggac cggctgctac tttgtgacca acatcaccac caagctgccg tggcacataa
     3961 agaagcatga gaaagccgag cggcgggcag ccaacggatt caagtacttc accaagcgtg
     4021 aggagtgcgg caggctaggc tgcaagtaca accaggtgaa cagccacttc cactgcatcc
     4081 gggagggctg ccagttctcc ttcctcctca agcaccagat gacctcccac gcccggaagc
     4141 acatgcggag gatgctgggg aagaacttcg atcgcgtgcc ctcctcccag ggcccccaga
     4201 gcttgatgga caccgagacg gacgagtaca tggattatac tggctgcagc ccgggtgccg
     4261 tgtcctctga gtcctccacc atggaccgaa gctgctccag cacccctgtg ggcaacgaga
     4321 gcaccgcagc agggaacacc atctccatgc cgacagcctc cggggccaaa aagcgcttct
     4381 ggatcattga ggacatgtcg ccgttcggca agcggcgcaa gacggcctcc tcgcgcaaga
     4441 tgctggacga gggcatgatg ctggagggct tccggcgctt cgacctctac gaggactgca
     4501 aggacgcggc ctgccagttc tcgctcaagg tcacccacta ccactgcacg cgcgagaact
     4561 gcggctacaa gttctgcggg cgcacgcaca tgtacaagca cgcgcagcac cacgaccgcg
     4621 tggacaacct cgtgctggac gacttcaagc gcttcaaggc ctcgctcagc tgccacttcg
     4681 ccgactgccc tttctcgggc accagcacgc acttccactg cctgcgctgt cgcttccgct
     4741 gcaccgacag caccaaggtc acggcgcacc gcaagcacca cggcaagcag gacgtgatca
     4801 gcgcggcggg cttctgccag ttcagctcga gcgccgactg cgccgtggcc gactgcaagt
     4861 acaagctcaa gtgctcgcat ttccactgca cctaccccgg ctgccgccac acggtcgtgg
     4921 gcatgtcgca gatggactcg cacaagcgca agcacgagaa gcaggaacgc ggcgagccgc
     4981 ccgccgccgc ctcccccggc gccgagggcc ccgcgcccgg cccggccgcc agcctggact
     5041 gcgcgccccc gcccggcgcc gagcccgccg ccgccctgct cttcctgccc ggcccggggc
     5101 ggggaccgga cgacgcgggc gacccccgcc cgcccgacgc ccccgggccc cgcgccggcc
     5161 ccgccgcgcc cggccccgcg gccggcgagt cgtcgcagga ggacgacgag gaggagctgg
     5221 agctgaacga ggaggaggcg gacgacgacg aggacgacga cgacgaggac gacgacgacg
     5281 acgacgagga cgacgacgac gacgaggacc tgcgcaccga ctcggaggag tcgctctccg
     5341 aggcggcggc ggcggcgggg ccgggatcgc ggagcctgga gctggcggcc ctcggcgccc
     5401 ccgcgccccc cggccccacg cctgccgccg ccgcctcccc gtagccgcgg ggcccgtggc
     5461 gcat
//
LOCUS       XM_032605175            5594 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus castor zinc finger 1 (CASZ1), transcript
            variant X2, mRNA.
ACCESSION   XM_032605175
VERSION     XM_032605175.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5594
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5594
                     /gene="CASZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740036"
     CDS             307..5574
                     /gene="CASZ1"
                     /codon_start=1
                     /product="zinc finger protein castor homolog 1 isoform X2"
                     /protein_id="XP_032461066.1"
                     /db_xref="GeneID:116740036"
                     /translation="MDLGTAEGTRCPDPPAGKPAMAAKRKGGLKLNAICAKLSRQVVV
                     EKGAEAEDSPLRPRDKVRSGPESGVARAPRSEEDKRRAVIEKWVNGEYSEEPAPTPVL
                     GRTAREGLELPPEGVYMVQPQGCSDEEDHGEEPPKDGSVMEEKESDGAASKDDSGPSA
                     KQASGEASSLRDYAASTMTEFLGMFGYDDQNTRDELAGKISFEKLHAGSTPEAATSSA
                     LPASEDALSKRARFSKYEEYIRKLKAGEQLSWPAHGTTAEGRAGKEALGSLPGLRLPS
                     STTHLETKATILPLPSHSSVPMQGLVARASKYDFFIQKLKTGENLRPQNGSAYKKPSK
                     YDLENVKYLHLFKPGEGSPDMGGAIAFKTGKVGRPSKYDVRAIQKPGPAKVPPTPSLA
                     PAPLASVPTAPSAPGPGPEPPASLPFNTPEYLKSTFSKTDSITTGTVSTVKNGLPTDK
                     PAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHYHCLDPECNYQRFTSKQDVIRHY
                     NMHKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKVYTSTSDVMT
                     HENFHKKNTQLINDGFQRFRATEDCGTADCQFYGQKTTHFHCRRPGCTFTFKNKCDIE
                     KHKSYHIKDDAYAKDGFKKFYKYEECKYEGCVYSKATNHFHCIRAGCGFTFTSTSQMT
                     SHKRKHERRHIRASGSGVLGLPPSLLGAKDTEHEESSNDDLVDFSALSSKNSSLSASP
                     TSQQSSASLVTATATSEAGPSATKPPNSKISGLLAQGLPGSIPLALALSSSGLPSAAP
                     YFPILPGRGNTSLPVGAPGLMGTMSSGTAASVTPDTPALAASGAGDSAAAAAASVPVP
                     PASIMERISASKGLISPMMARLAAAALKPSATFDPGNGQQATPARFPPAPVKQEPGES
                     AGAPGPHEASQDRSLDLTLKEPSNESNGHAVPANSSLLSSLMNKMSQGNPSLGSLLNI
                     KTEAEGSPAGESSPFLGKAVKALVQEKLSEPWKVYLRRFGTKDFCNAQCDFLHKAHFH
                     CVVEECGALFSTLDGAIKHANFHFRTEGGAVKGNVEASFPASAAETKPSLAPSSPPAP
                     PITTATASSLEGPTPSLAAVPSSPTLLAWKQLASTIPQMPQIPASVPHLPTSPLATTS
                     LENAKPQVKPGFLQFQENDPCLATDCKYANKFHFHCLFGNCKYVCKTSGKAESHCLDH
                     INPNNNLVNVRDQFAYYSLQCLCPNQHCEFRMRGHYHCLRTGCYFVTNITTKLPWHIK
                     KHEKAERRAANGFKYFTKREECGRLGCKYNQVNSHFHCIREGCQFSFLLKHQMTSHAR
                     KHMRRMLGKNFDRVPSSQGPQSLMDTETDEYMDYTGCSPGAVSSESSTMDRSCSSTPV
                     GNESTAAGNTISMPTASGAKKRFWIIEDMSPFGKRRKTASSRKMLDEGMMLEGFRRFD
                     LYEDCKDAACQFSLKVTHYHCTRENCGYKFCGRTHMYKHAQHHDRVDNLVLDDFKRFK
                     ASLSCHFADCPFSGTSTHFHCLRCRFRCTDSTKVTAHRKHHGKQDVISAAGFCQFSSS
                     ADCAVADCKYKLKCSHFHCTYPGCRHTVVGMSQMDSHKRKHEKQERGEPPAAASPGAE
                     GPAPGPAASLDCAPPPGAEPAAALLFLPGPGRGPDDAGDPRPPDAPGPRAGPAAPGPA
                     AGESSQEDDEEELELNEEEADDDEDDDDEDDDDDDEDDDDDEDLRTDSEESLSEAAAA
                     AGPGSRSLELAALGAPAPPGPTPAAAASP"
ORIGIN      
        1 cgcggcgctc catcccaaac acacacacat ttttcccccg gacttggaaa gtcacccaaa
       61 gccgccccaa gtgcaggtaa acagacctcg ctgagtgaag gcaaagaccc tctccagccc
      121 acctgccttt cctgctgtta cggcatcgac ccgtcctgta gaagggggtc ctgcaactct
      181 tgtggcgtgt gttggaatgg acttcggacc ctggcttctt gggatgcaaa ggatgaagtg
      241 acgcccgcac tgcaagagag gagcctctag gacccgctac aagagtttgg gaccaaagag
      301 aggagaatgg atcttggtac agctgaaggc acccggtgcc ccgacccgcc tgcaggcaag
      361 cccgcgatgg cggccaaacg caaaggcggc ctgaagctca acgccatctg cgccaagctg
      421 agccgccagg tggtggtgga gaagggagcg gaggccgagg acagcccact gcggccccgg
      481 gacaaagtgc gcagtggccc tgagtcgggg gtggcccggg ccccccgcag cgaagaggac
      541 aagaggcggg cggtgatcga gaagtgggtg aacggggaat acagcgagga gccggcaccc
      601 acgcccgtgc tggggcggac tgcccgggag ggtctggagc tgccacccga gggcgtctac
      661 atggtgcagc cccagggctg cagcgacgag gaagaccatg gcgaagagcc ccccaaggat
      721 ggcagcgtca tggaggagaa ggaatcggac ggggcagcct ccaaggatga cagtggcccc
      781 agtgccaagc aggcttcagg agaggcctcc tcgctgcggg actacgcggc ctccaccatg
      841 accgagttcc ttggcatgtt tggctatgat gaccagaaca cgagggacga gctggccggg
      901 aagatcagct tcgagaagct gcacgcgggc tccacgccag aggcggccac ctcctccgcg
      961 ctgcccgcct ccgaggacgc cctcagcaag cgggcacggt tctccaagta tgaggagtac
     1021 atccgcaagc tcaaggccgg cgagcagctg tcctggccgg cccacggcac cacagccgag
     1081 gggcgggccg gcaaggaggc cctgggctcc ctgcctggcc tgcggctgcc cagtagcacc
     1141 acgcacctgg agaccaaggc caccatcctg cccctgccct cacacagcag tgtccccatg
     1201 cagggcctgg tggcccgtgc ctccaagtac gacttcttca tccagaaact gaagacgggt
     1261 gagaacctgc ggccccagaa cgggagcgcc tacaagaagc cgtctaagta cgacctggag
     1321 aacgtcaagt acctgcacct cttcaaaccc ggggagggca gccccgacat gggaggggcc
     1381 atcgccttca agacgggcaa ggtggggcgc ccctccaagt atgacgtccg ggccatccag
     1441 aagccgggcc ccgccaaggt tccgcccacc cccagcctgg ctcctgcacc cctcgccagc
     1501 gtgcccactg ctcccagtgc ccccgggcca ggccctgagc cacctgcctc cctgcctttc
     1561 aacactcccg agtacctgaa gtcaaccttc tccaaaacag actccatcac cacggggacc
     1621 gtctccactg tcaagaacgg attgcccaca gataaaccag ctgtcactga agatgtaaac
     1681 atttaccaga aatatattgc caggttctca ggcagtcagc actgtggcca catccactgc
     1741 gcctaccagt accgcgagca ctaccactgc ctcgaccccg agtgcaacta ccagaggttc
     1801 acgagcaagc aggacgtgat ccggcactac aacatgcaca agaaacggga caactccctg
     1861 cagcacggct tcatgcgctt cagcccgctg gacgactgca gcgtctacta ccacggctgc
     1921 cacctcaacg ggaagagcac ccactaccac tgcatgcagg tgggctgtaa caaggtgtac
     1981 acgagcacat cggacgtgat gacccacgag aacttccata agaagaacac ccagctcatc
     2041 aacgacggct tccagcgctt ccgagccact gaggactgcg gcacggccga ctgccagttc
     2101 tacgggcaga agaccacgca cttccactgc aggcgccccg gctgcacatt cacctttaag
     2161 aacaagtgtg acatcgagaa gcacaagagc taccacatca aggacgacgc ctacgccaag
     2221 gatggcttca agaagttcta caagtacgag gagtgcaagt acgagggctg tgtgtacagc
     2281 aaggccacca accacttcca ctgcatccgc gccggctgcg gcttcacgtt cacctccacc
     2341 agccagatga cctcccacaa gcgcaagcac gagcgccggc acatccgcgc ctcgggctcg
     2401 ggcgtgctgg ggctgccgcc ctcgctgctg ggcgccaagg acacggagca cgaggagtcc
     2461 agcaacgacg acctggttga cttctctgcc ctgagcagca agaactccag cctcagcgcc
     2521 tcccccacca gccagcagtc ctccgcctcc ctggtcaccg ccactgccac ctccgaggct
     2581 gggcccagtg ccaccaagcc ccccaacagc aagatctcgg ggctgctggc ccagggcctg
     2641 cctggctcca tccccctggc gctggccctc tccagctcgg gcctgcccag cgctgcgccc
     2701 tacttcccca tccttccggg ccggggcaac acctccctgc ctgtgggtgc ccccggcctc
     2761 atgggtacca tgtcgtcagg gacagcagcc tcagtaaccc ccgacacacc cgctctggct
     2821 gcctcgggag ctggcgactc ggccgcagcg gcagctgcct ctgtcccggt gccccctgcc
     2881 tccatcatgg agaggatctc tgcgagcaag ggcctcatct cgcccatgat ggcccggctg
     2941 gctgcggccg ccctcaagcc ctctgccacc tttgacccag gaaatgggca gcaggccacc
     3001 cctgccaggt tccccccagc cccggtgaag caggagcccg gtgagagtgc tggcgcccca
     3061 ggtccccacg aggcctccca ggaccgcagt ttagacctga ctctgaagga gcccagtaat
     3121 gaatcaaatg gccacgcagt cccggcaaat tcatctcttt tatcctcgct tatgaataag
     3181 atgtctcagg gcaatcccag cctcggcagc ctgttgaaca tcaagacaga agcggagggg
     3241 agccccgccg gggagtcctc gcccttcctg ggcaaggccg tgaaggcgct ggttcaggag
     3301 aagctgtcag agccctggaa ggtctacctt cgcaggtttg gcaccaagga cttctgcaac
     3361 gcgcagtgtg acttcctcca caaggcccac ttccactgcg tggtggagga gtgcggcgcg
     3421 cttttcagca ccctggacgg ggccatcaag cacgccaact tccacttccg gacagaggga
     3481 ggagcagtga aaggaaatgt ggaggcttcc ttcccggcct cggctgctga gaccaaacct
     3541 tccttggccc cctcatcccc tccagcgcct cccatcacca cggccacggc ttcctctctc
     3601 gaggggccca ctcccagcct ggccgccgtg ccctccagcc ccaccctgct cgcctggaag
     3661 cagctggctt ccaccatacc ccagatgcct cagattccag cgtcagtgcc tcacctgccc
     3721 acttcgccct tggcaacgac ttctctagaa aacgccaagc cccaggtcaa acctggattc
     3781 ctccagttcc aggagaacga tccttgcctc gcaacggact gcaagtatgc caacaagttc
     3841 cacttccact gtctctttgg gaactgcaag tacgtctgca aaacctccgg caaggccgag
     3901 tcccactgcc tggaccacat caatcccaac aacaacctcg tgaacgtgcg agaccagttt
     3961 gcgtactact ccctgcagtg cctctgtccc aaccagcact gcgagttccg gatgcgcggg
     4021 cactaccact gtctcaggac cggctgctac tttgtgacca acatcaccac caagctgccg
     4081 tggcacataa agaagcatga gaaagccgag cggcgggcag ccaacggatt caagtacttc
     4141 accaagcgtg aggagtgcgg caggctaggc tgcaagtaca accaggtgaa cagccacttc
     4201 cactgcatcc gggagggctg ccagttctcc ttcctcctca agcaccagat gacctcccac
     4261 gcccggaagc acatgcggag gatgctgggg aagaacttcg atcgcgtgcc ctcctcccag
     4321 ggcccccaga gcttgatgga caccgagacg gacgagtaca tggattatac tggctgcagc
     4381 ccgggtgccg tgtcctctga gtcctccacc atggaccgaa gctgctccag cacccctgtg
     4441 ggcaacgaga gcaccgcagc agggaacacc atctccatgc cgacagcctc cggggccaaa
     4501 aagcgcttct ggatcattga ggacatgtcg ccgttcggca agcggcgcaa gacggcctcc
     4561 tcgcgcaaga tgctggacga gggcatgatg ctggagggct tccggcgctt cgacctctac
     4621 gaggactgca aggacgcggc ctgccagttc tcgctcaagg tcacccacta ccactgcacg
     4681 cgcgagaact gcggctacaa gttctgcggg cgcacgcaca tgtacaagca cgcgcagcac
     4741 cacgaccgcg tggacaacct cgtgctggac gacttcaagc gcttcaaggc ctcgctcagc
     4801 tgccacttcg ccgactgccc tttctcgggc accagcacgc acttccactg cctgcgctgt
     4861 cgcttccgct gcaccgacag caccaaggtc acggcgcacc gcaagcacca cggcaagcag
     4921 gacgtgatca gcgcggcggg cttctgccag ttcagctcga gcgccgactg cgccgtggcc
     4981 gactgcaagt acaagctcaa gtgctcgcat ttccactgca cctaccccgg ctgccgccac
     5041 acggtcgtgg gcatgtcgca gatggactcg cacaagcgca agcacgagaa gcaggaacgc
     5101 ggcgagccgc ccgccgccgc ctcccccggc gccgagggcc ccgcgcccgg cccggccgcc
     5161 agcctggact gcgcgccccc gcccggcgcc gagcccgccg ccgccctgct cttcctgccc
     5221 ggcccggggc ggggaccgga cgacgcgggc gacccccgcc cgcccgacgc ccccgggccc
     5281 cgcgccggcc ccgccgcgcc cggccccgcg gccggcgagt cgtcgcagga ggacgacgag
     5341 gaggagctgg agctgaacga ggaggaggcg gacgacgacg aggacgacga cgacgaggac
     5401 gacgacgacg acgacgagga cgacgacgac gacgaggacc tgcgcaccga ctcggaggag
     5461 tcgctctccg aggcggcggc ggcggcgggg ccgggatcgc ggagcctgga gctggcggcc
     5521 ctcggcgccc ccgcgccccc cggccccacg cctgccgccg ccgcctcccc gtagccgcgg
     5581 ggcccgtggc gcat
//
LOCUS       XM_032605184            5530 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus castor zinc finger 1 (CASZ1), transcript
            variant X3, mRNA.
ACCESSION   XM_032605184
VERSION     XM_032605184.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5530
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5530
                     /gene="CASZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740036"
     CDS             243..5510
                     /gene="CASZ1"
                     /codon_start=1
                     /product="zinc finger protein castor homolog 1 isoform X2"
                     /protein_id="XP_032461075.1"
                     /db_xref="GeneID:116740036"
                     /translation="MDLGTAEGTRCPDPPAGKPAMAAKRKGGLKLNAICAKLSRQVVV
                     EKGAEAEDSPLRPRDKVRSGPESGVARAPRSEEDKRRAVIEKWVNGEYSEEPAPTPVL
                     GRTAREGLELPPEGVYMVQPQGCSDEEDHGEEPPKDGSVMEEKESDGAASKDDSGPSA
                     KQASGEASSLRDYAASTMTEFLGMFGYDDQNTRDELAGKISFEKLHAGSTPEAATSSA
                     LPASEDALSKRARFSKYEEYIRKLKAGEQLSWPAHGTTAEGRAGKEALGSLPGLRLPS
                     STTHLETKATILPLPSHSSVPMQGLVARASKYDFFIQKLKTGENLRPQNGSAYKKPSK
                     YDLENVKYLHLFKPGEGSPDMGGAIAFKTGKVGRPSKYDVRAIQKPGPAKVPPTPSLA
                     PAPLASVPTAPSAPGPGPEPPASLPFNTPEYLKSTFSKTDSITTGTVSTVKNGLPTDK
                     PAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHYHCLDPECNYQRFTSKQDVIRHY
                     NMHKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKVYTSTSDVMT
                     HENFHKKNTQLINDGFQRFRATEDCGTADCQFYGQKTTHFHCRRPGCTFTFKNKCDIE
                     KHKSYHIKDDAYAKDGFKKFYKYEECKYEGCVYSKATNHFHCIRAGCGFTFTSTSQMT
                     SHKRKHERRHIRASGSGVLGLPPSLLGAKDTEHEESSNDDLVDFSALSSKNSSLSASP
                     TSQQSSASLVTATATSEAGPSATKPPNSKISGLLAQGLPGSIPLALALSSSGLPSAAP
                     YFPILPGRGNTSLPVGAPGLMGTMSSGTAASVTPDTPALAASGAGDSAAAAAASVPVP
                     PASIMERISASKGLISPMMARLAAAALKPSATFDPGNGQQATPARFPPAPVKQEPGES
                     AGAPGPHEASQDRSLDLTLKEPSNESNGHAVPANSSLLSSLMNKMSQGNPSLGSLLNI
                     KTEAEGSPAGESSPFLGKAVKALVQEKLSEPWKVYLRRFGTKDFCNAQCDFLHKAHFH
                     CVVEECGALFSTLDGAIKHANFHFRTEGGAVKGNVEASFPASAAETKPSLAPSSPPAP
                     PITTATASSLEGPTPSLAAVPSSPTLLAWKQLASTIPQMPQIPASVPHLPTSPLATTS
                     LENAKPQVKPGFLQFQENDPCLATDCKYANKFHFHCLFGNCKYVCKTSGKAESHCLDH
                     INPNNNLVNVRDQFAYYSLQCLCPNQHCEFRMRGHYHCLRTGCYFVTNITTKLPWHIK
                     KHEKAERRAANGFKYFTKREECGRLGCKYNQVNSHFHCIREGCQFSFLLKHQMTSHAR
                     KHMRRMLGKNFDRVPSSQGPQSLMDTETDEYMDYTGCSPGAVSSESSTMDRSCSSTPV
                     GNESTAAGNTISMPTASGAKKRFWIIEDMSPFGKRRKTASSRKMLDEGMMLEGFRRFD
                     LYEDCKDAACQFSLKVTHYHCTRENCGYKFCGRTHMYKHAQHHDRVDNLVLDDFKRFK
                     ASLSCHFADCPFSGTSTHFHCLRCRFRCTDSTKVTAHRKHHGKQDVISAAGFCQFSSS
                     ADCAVADCKYKLKCSHFHCTYPGCRHTVVGMSQMDSHKRKHEKQERGEPPAAASPGAE
                     GPAPGPAASLDCAPPPGAEPAAALLFLPGPGRGPDDAGDPRPPDAPGPRAGPAAPGPA
                     AGESSQEDDEEELELNEEEADDDEDDDDEDDDDDDEDDDDDEDLRTDSEESLSEAAAA
                     AGPGSRSLELAALGAPAPPGPTPAAAASP"
ORIGIN      
        1 ccccaggtgc aggtaaacag acctcgctga gtgaaggcaa agaccctctc cagcccacct
       61 gcctttcctg ctgttacggc atcgacccgt cctgtagaag ggggtcctgc aactcttgtg
      121 gcgtgtgttg gaatggactt cggaccctgg cttcttggga tgcaaaggat gaagtgacgc
      181 ccgcactgca agagaggagc ctctaggacc cgctacaaga gtttgggacc aaagagagga
      241 gaatggatct tggtacagct gaaggcaccc ggtgccccga cccgcctgca ggcaagcccg
      301 cgatggcggc caaacgcaaa ggcggcctga agctcaacgc catctgcgcc aagctgagcc
      361 gccaggtggt ggtggagaag ggagcggagg ccgaggacag cccactgcgg ccccgggaca
      421 aagtgcgcag tggccctgag tcgggggtgg cccgggcccc ccgcagcgaa gaggacaaga
      481 ggcgggcggt gatcgagaag tgggtgaacg gggaatacag cgaggagccg gcacccacgc
      541 ccgtgctggg gcggactgcc cgggagggtc tggagctgcc acccgagggc gtctacatgg
      601 tgcagcccca gggctgcagc gacgaggaag accatggcga agagcccccc aaggatggca
      661 gcgtcatgga ggagaaggaa tcggacgggg cagcctccaa ggatgacagt ggccccagtg
      721 ccaagcaggc ttcaggagag gcctcctcgc tgcgggacta cgcggcctcc accatgaccg
      781 agttccttgg catgtttggc tatgatgacc agaacacgag ggacgagctg gccgggaaga
      841 tcagcttcga gaagctgcac gcgggctcca cgccagaggc ggccacctcc tccgcgctgc
      901 ccgcctccga ggacgccctc agcaagcggg cacggttctc caagtatgag gagtacatcc
      961 gcaagctcaa ggccggcgag cagctgtcct ggccggccca cggcaccaca gccgaggggc
     1021 gggccggcaa ggaggccctg ggctccctgc ctggcctgcg gctgcccagt agcaccacgc
     1081 acctggagac caaggccacc atcctgcccc tgccctcaca cagcagtgtc cccatgcagg
     1141 gcctggtggc ccgtgcctcc aagtacgact tcttcatcca gaaactgaag acgggtgaga
     1201 acctgcggcc ccagaacggg agcgcctaca agaagccgtc taagtacgac ctggagaacg
     1261 tcaagtacct gcacctcttc aaacccgggg agggcagccc cgacatggga ggggccatcg
     1321 ccttcaagac gggcaaggtg gggcgcccct ccaagtatga cgtccgggcc atccagaagc
     1381 cgggccccgc caaggttccg cccaccccca gcctggctcc tgcacccctc gccagcgtgc
     1441 ccactgctcc cagtgccccc gggccaggcc ctgagccacc tgcctccctg cctttcaaca
     1501 ctcccgagta cctgaagtca accttctcca aaacagactc catcaccacg gggaccgtct
     1561 ccactgtcaa gaacggattg cccacagata aaccagctgt cactgaagat gtaaacattt
     1621 accagaaata tattgccagg ttctcaggca gtcagcactg tggccacatc cactgcgcct
     1681 accagtaccg cgagcactac cactgcctcg accccgagtg caactaccag aggttcacga
     1741 gcaagcagga cgtgatccgg cactacaaca tgcacaagaa acgggacaac tccctgcagc
     1801 acggcttcat gcgcttcagc ccgctggacg actgcagcgt ctactaccac ggctgccacc
     1861 tcaacgggaa gagcacccac taccactgca tgcaggtggg ctgtaacaag gtgtacacga
     1921 gcacatcgga cgtgatgacc cacgagaact tccataagaa gaacacccag ctcatcaacg
     1981 acggcttcca gcgcttccga gccactgagg actgcggcac ggccgactgc cagttctacg
     2041 ggcagaagac cacgcacttc cactgcaggc gccccggctg cacattcacc tttaagaaca
     2101 agtgtgacat cgagaagcac aagagctacc acatcaagga cgacgcctac gccaaggatg
     2161 gcttcaagaa gttctacaag tacgaggagt gcaagtacga gggctgtgtg tacagcaagg
     2221 ccaccaacca cttccactgc atccgcgccg gctgcggctt cacgttcacc tccaccagcc
     2281 agatgacctc ccacaagcgc aagcacgagc gccggcacat ccgcgcctcg ggctcgggcg
     2341 tgctggggct gccgccctcg ctgctgggcg ccaaggacac ggagcacgag gagtccagca
     2401 acgacgacct ggttgacttc tctgccctga gcagcaagaa ctccagcctc agcgcctccc
     2461 ccaccagcca gcagtcctcc gcctccctgg tcaccgccac tgccacctcc gaggctgggc
     2521 ccagtgccac caagcccccc aacagcaaga tctcggggct gctggcccag ggcctgcctg
     2581 gctccatccc cctggcgctg gccctctcca gctcgggcct gcccagcgct gcgccctact
     2641 tccccatcct tccgggccgg ggcaacacct ccctgcctgt gggtgccccc ggcctcatgg
     2701 gtaccatgtc gtcagggaca gcagcctcag taacccccga cacacccgct ctggctgcct
     2761 cgggagctgg cgactcggcc gcagcggcag ctgcctctgt cccggtgccc cctgcctcca
     2821 tcatggagag gatctctgcg agcaagggcc tcatctcgcc catgatggcc cggctggctg
     2881 cggccgccct caagccctct gccacctttg acccaggaaa tgggcagcag gccacccctg
     2941 ccaggttccc cccagccccg gtgaagcagg agcccggtga gagtgctggc gccccaggtc
     3001 cccacgaggc ctcccaggac cgcagtttag acctgactct gaaggagccc agtaatgaat
     3061 caaatggcca cgcagtcccg gcaaattcat ctcttttatc ctcgcttatg aataagatgt
     3121 ctcagggcaa tcccagcctc ggcagcctgt tgaacatcaa gacagaagcg gaggggagcc
     3181 ccgccgggga gtcctcgccc ttcctgggca aggccgtgaa ggcgctggtt caggagaagc
     3241 tgtcagagcc ctggaaggtc taccttcgca ggtttggcac caaggacttc tgcaacgcgc
     3301 agtgtgactt cctccacaag gcccacttcc actgcgtggt ggaggagtgc ggcgcgcttt
     3361 tcagcaccct ggacggggcc atcaagcacg ccaacttcca cttccggaca gagggaggag
     3421 cagtgaaagg aaatgtggag gcttccttcc cggcctcggc tgctgagacc aaaccttcct
     3481 tggccccctc atcccctcca gcgcctccca tcaccacggc cacggcttcc tctctcgagg
     3541 ggcccactcc cagcctggcc gccgtgccct ccagccccac cctgctcgcc tggaagcagc
     3601 tggcttccac cataccccag atgcctcaga ttccagcgtc agtgcctcac ctgcccactt
     3661 cgcccttggc aacgacttct ctagaaaacg ccaagcccca ggtcaaacct ggattcctcc
     3721 agttccagga gaacgatcct tgcctcgcaa cggactgcaa gtatgccaac aagttccact
     3781 tccactgtct ctttgggaac tgcaagtacg tctgcaaaac ctccggcaag gccgagtccc
     3841 actgcctgga ccacatcaat cccaacaaca acctcgtgaa cgtgcgagac cagtttgcgt
     3901 actactccct gcagtgcctc tgtcccaacc agcactgcga gttccggatg cgcgggcact
     3961 accactgtct caggaccggc tgctactttg tgaccaacat caccaccaag ctgccgtggc
     4021 acataaagaa gcatgagaaa gccgagcggc gggcagccaa cggattcaag tacttcacca
     4081 agcgtgagga gtgcggcagg ctaggctgca agtacaacca ggtgaacagc cacttccact
     4141 gcatccggga gggctgccag ttctccttcc tcctcaagca ccagatgacc tcccacgccc
     4201 ggaagcacat gcggaggatg ctggggaaga acttcgatcg cgtgccctcc tcccagggcc
     4261 cccagagctt gatggacacc gagacggacg agtacatgga ttatactggc tgcagcccgg
     4321 gtgccgtgtc ctctgagtcc tccaccatgg accgaagctg ctccagcacc cctgtgggca
     4381 acgagagcac cgcagcaggg aacaccatct ccatgccgac agcctccggg gccaaaaagc
     4441 gcttctggat cattgaggac atgtcgccgt tcggcaagcg gcgcaagacg gcctcctcgc
     4501 gcaagatgct ggacgagggc atgatgctgg agggcttccg gcgcttcgac ctctacgagg
     4561 actgcaagga cgcggcctgc cagttctcgc tcaaggtcac ccactaccac tgcacgcgcg
     4621 agaactgcgg ctacaagttc tgcgggcgca cgcacatgta caagcacgcg cagcaccacg
     4681 accgcgtgga caacctcgtg ctggacgact tcaagcgctt caaggcctcg ctcagctgcc
     4741 acttcgccga ctgccctttc tcgggcacca gcacgcactt ccactgcctg cgctgtcgct
     4801 tccgctgcac cgacagcacc aaggtcacgg cgcaccgcaa gcaccacggc aagcaggacg
     4861 tgatcagcgc ggcgggcttc tgccagttca gctcgagcgc cgactgcgcc gtggccgact
     4921 gcaagtacaa gctcaagtgc tcgcatttcc actgcaccta ccccggctgc cgccacacgg
     4981 tcgtgggcat gtcgcagatg gactcgcaca agcgcaagca cgagaagcag gaacgcggcg
     5041 agccgcccgc cgccgcctcc cccggcgccg agggccccgc gcccggcccg gccgccagcc
     5101 tggactgcgc gcccccgccc ggcgccgagc ccgccgccgc cctgctcttc ctgcccggcc
     5161 cggggcgggg accggacgac gcgggcgacc cccgcccgcc cgacgccccc gggccccgcg
     5221 ccggccccgc cgcgcccggc cccgcggccg gcgagtcgtc gcaggaggac gacgaggagg
     5281 agctggagct gaacgaggag gaggcggacg acgacgagga cgacgacgac gaggacgacg
     5341 acgacgacga cgaggacgac gacgacgacg aggacctgcg caccgactcg gaggagtcgc
     5401 tctccgaggc ggcggcggcg gcggggccgg gatcgcggag cctggagctg gcggccctcg
     5461 gcgcccccgc gccccccggc cccacgcctg ccgccgccgc ctccccgtag ccgcggggcc
     5521 cgtggcgcat
//
LOCUS       XM_032605195            1458 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hydroxyacid oxidase 2 (HAO2), transcript
            variant X1, mRNA.
ACCESSION   XM_032605195
VERSION     XM_032605195.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1458
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1458
                     /gene="HAO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740052"
     CDS             101..1162
                     /gene="HAO2"
                     /codon_start=1
                     /product="hydroxyacid oxidase 2"
                     /protein_id="XP_032461086.1"
                     /db_xref="GeneID:116740052"
                     /translation="MPLVCLTDFKAHAREQLSKSTWDFIEGGADDCLTRDDNIAAFKK
                     IRLRPRYLKDVSKVDTRTTIQGEEISTPICIAPTGFHCLAWPDGEMSTARAAQAAGIC
                     YITSTYASCSLEDIVATAPGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVP
                     KIGNRRHNITNQVNLMKSLLLKDLGSPEKGNLMPYLQMSPIDSSICWDDLSWFQSMTR
                     LPIILKGILTKEDAELAVKHNVHGIIVSNHGGRQLDEVPASIDALTEVVAAVKGKIEV
                     YLDGGIRTGNDVLKALALGAKCVFLGRPILWGLAYKGEHGVEEVLNILKNEFHTSMTL
                     TGCRSVAEISRDLIQFSRM"
     misc_feature    137..1147
                     /gene="HAO2"
                     /note="FMN-dependent dehydrogenase; Region: FMN_dh;
                     pfam01070"
                     /db_xref="CDD:426029"
     misc_feature    order(170..172,416..418,488..490,572..574,593..595,
                     770..772,842..844,851..853,1007..1009)
                     /gene="HAO2"
                     /note="active site"
                     /db_xref="CDD:239203"
     misc_feature    order(170..172,488..490,593..595,842..844,851..853)
                     /gene="HAO2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239203"
     misc_feature    order(416..418,488..490,572..574,770..772,842..844,
                     851..853,1007..1009)
                     /gene="HAO2"
                     /note="FMN binding site [chemical binding]; other site"
                     /db_xref="CDD:239203"
     misc_feature    order(488..490,593..595,842..844)
                     /gene="HAO2"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:239203"
ORIGIN      
        1 tgctattccc accacagcca gccgtgagcc aggagtggcg tggcgacccc tggacatcgc
       61 tttccccaag tactgagaga ggctaatacc aggtccagaa atgcccttgg tgtgcttgac
      121 agacttcaag gcccatgcac gggagcagct gtctaagtca acttgggatt ttattgaagg
      181 aggagctgat gactgcctca cgcgggatga caacatcgca gcatttaaaa aaatccgcct
      241 ccgtccccgg tacctgaaag atgtgtcaaa ggtggacacg cggaccacaa tccaagggga
      301 ggagatcagc acccccattt gcatcgcacc cacgggtttc cactgccttg cctggcctga
      361 tggagaaatg agcacagcca gagctgcgca agcagccggt atctgttaca tcaccagcac
      421 gtatgccagc tgtagccttg aagacattgt tgccactgcc cccgggggcc tgcgatggtt
      481 ccaactgtac gtgcacccaa acaggcagct aaacaaacag ctgatccaaa aggtagaatc
      541 cctgggtttc aaagctctgg taatcactgt ggatgtaccc aaaattggca acagacgaca
      601 caacattaca aaccaagtga acttgatgaa gagcttactg ctaaaagatc tcggatcacc
      661 tgagaaggga aatttaatgc cttatctcca gatgtccccc attgactcat ccatctgctg
      721 ggatgatctc tcctggtttc agagcatgac tcgattgccc atcatcctta aggggatctt
      781 gacaaaagag gatgcagagt tagctgtgaa gcacaatgtc catggcatca ttgtttccaa
      841 ccatggtggg aggcagcttg atgaggttcc tgcttctatc gatgctttga cagaagtggt
      901 ggctgctgtg aaagggaaaa ttgaagtgta cctggatggt ggcatccgaa ccggcaatga
      961 cgtgctgaaa gctctggccc tcggggctaa atgcgttttt ctggggagac ccatcctatg
     1021 gggtctcgcc tacaagggtg aacatggtgt tgaggaagtt ttgaacattt taaaaaatga
     1081 attccacact tccatgaccc tgacaggctg ccggtcggtt gccgagatca gtcgggacct
     1141 gatccagttc tccaggatgt agagaaagag agtgaaggga ctgactgctg agttcgccca
     1201 cgggaagaag acaaaatctt aatagggtgt gtgatgccat cctgcctcgg tcccatcctg
     1261 tccacaggct catctcctgc accctcaacc actccacccc caatccctca tattcctcaa
     1321 atgtgccgat gctcttcttt gcctcactgc cttgtatatg ctgttctctt gcctaaaatc
     1381 ctcctctgaa agaagacttc ttaaaagggc agttcaataa tgactgaagt agctagtgga
     1441 ttaaaatttt tgaatata
//
LOCUS       XM_032605205            2462 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hydroxyacid oxidase 2 (HAO2), transcript
            variant X2, mRNA.
ACCESSION   XM_032605205
VERSION     XM_032605205.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2462
                     /gene="HAO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740052"
     CDS             1105..2166
                     /gene="HAO2"
                     /codon_start=1
                     /product="hydroxyacid oxidase 2"
                     /protein_id="XP_032461096.1"
                     /db_xref="GeneID:116740052"
                     /translation="MPLVCLTDFKAHAREQLSKSTWDFIEGGADDCLTRDDNIAAFKK
                     IRLRPRYLKDVSKVDTRTTIQGEEISTPICIAPTGFHCLAWPDGEMSTARAAQAAGIC
                     YITSTYASCSLEDIVATAPGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVP
                     KIGNRRHNITNQVNLMKSLLLKDLGSPEKGNLMPYLQMSPIDSSICWDDLSWFQSMTR
                     LPIILKGILTKEDAELAVKHNVHGIIVSNHGGRQLDEVPASIDALTEVVAAVKGKIEV
                     YLDGGIRTGNDVLKALALGAKCVFLGRPILWGLAYKGEHGVEEVLNILKNEFHTSMTL
                     TGCRSVAEISRDLIQFSRM"
     misc_feature    1141..2151
                     /gene="HAO2"
                     /note="FMN-dependent dehydrogenase; Region: FMN_dh;
                     pfam01070"
                     /db_xref="CDD:426029"
     misc_feature    order(1174..1176,1420..1422,1492..1494,1576..1578,
                     1597..1599,1774..1776,1846..1848,1855..1857,2011..2013)
                     /gene="HAO2"
                     /note="active site"
                     /db_xref="CDD:239203"
     misc_feature    order(1174..1176,1492..1494,1597..1599,1846..1848,
                     1855..1857)
                     /gene="HAO2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239203"
     misc_feature    order(1420..1422,1492..1494,1576..1578,1774..1776,
                     1846..1848,1855..1857,2011..2013)
                     /gene="HAO2"
                     /note="FMN binding site [chemical binding]; other site"
                     /db_xref="CDD:239203"
     misc_feature    order(1492..1494,1597..1599,1846..1848)
                     /gene="HAO2"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:239203"
ORIGIN      
        1 accagggaag cccccattgt tgagttttta tgctagaaat ctgcagaaga acatttctgt
       61 gagtgtgtga tgtttaggat atggggattt gttgagacat cgggagttga aacttgatgg
      121 agtattctca tcgcacaagg cagagagatg acacacaggg gaatgttaaa ttcaagtaat
      181 gaatatttat gaacagcaac tcagtgtcac acactgtcct actgcctgga gatacaagat
      241 gtgctggggc ggggagggtc tcaggttcag tgattcacga ggaagaccta caggacacag
      301 cagatagttg aggctatgat ttattacagt gaaagactgc aaagcaaaat cagcaaaggg
      361 aaaatgctca tggggcaaaa tctagaggaa accaagtata agctcccaag agtcctctcc
      421 cagtagaact acacaggatg cacttaattc ctccagcaat gagttgtgac aacacgtgtg
      481 aaatattgtc ttaccaggga agctcgtttc agagtcttgg tgcccaaggt tttttgctgg
      541 gggttggtca tatggacatg ctctgcctaa cccataccaa aattctagac tctcaggggg
      601 aaagcagatg ttcagcatag agcacattgt ttgtacaaat agtttagaca cagagagaca
      661 ttcttatcag aacatggtgg gaactctcct gaaatccaag gtcccagact ccagccaagg
      721 gccaaccttg tatgcaggcc ttttgaagac tagcattctc aggcctgcta tattaactct
      781 tttatgcaca cagaggttta aataactgat tgcaatacag ttggataatt acaatgatta
      841 attcgttcga ttaaagttac tgagcctttg aagggtcaga taggaatgag ataagttaga
      901 cattgttgct gtattttgtc aaactcaact cagcacctca acagctccct gcccacccac
      961 tgacaaggtg tgctgctata aaaagctctg tggctgtgct ccaaagtcca cctcccggcc
     1021 tcctctcaga atccatggcg catcctgggg gctgtttctc gtctgtcata taacttcctt
     1081 ctgcttagcc ctttaggtcc agaaatgccc ttggtgtgct tgacagactt caaggcccat
     1141 gcacgggagc agctgtctaa gtcaacttgg gattttattg aaggaggagc tgatgactgc
     1201 ctcacgcggg atgacaacat cgcagcattt aaaaaaatcc gcctccgtcc ccggtacctg
     1261 aaagatgtgt caaaggtgga cacgcggacc acaatccaag gggaggagat cagcaccccc
     1321 atttgcatcg cacccacggg tttccactgc cttgcctggc ctgatggaga aatgagcaca
     1381 gccagagctg cgcaagcagc cggtatctgt tacatcacca gcacgtatgc cagctgtagc
     1441 cttgaagaca ttgttgccac tgcccccggg ggcctgcgat ggttccaact gtacgtgcac
     1501 ccaaacaggc agctaaacaa acagctgatc caaaaggtag aatccctggg tttcaaagct
     1561 ctggtaatca ctgtggatgt acccaaaatt ggcaacagac gacacaacat tacaaaccaa
     1621 gtgaacttga tgaagagctt actgctaaaa gatctcggat cacctgagaa gggaaattta
     1681 atgccttatc tccagatgtc ccccattgac tcatccatct gctgggatga tctctcctgg
     1741 tttcagagca tgactcgatt gcccatcatc cttaagggga tcttgacaaa agaggatgca
     1801 gagttagctg tgaagcacaa tgtccatggc atcattgttt ccaaccatgg tgggaggcag
     1861 cttgatgagg ttcctgcttc tatcgatgct ttgacagaag tggtggctgc tgtgaaaggg
     1921 aaaattgaag tgtacctgga tggtggcatc cgaaccggca atgacgtgct gaaagctctg
     1981 gccctcgggg ctaaatgcgt ttttctgggg agacccatcc tatggggtct cgcctacaag
     2041 ggtgaacatg gtgttgagga agttttgaac attttaaaaa atgaattcca cacttccatg
     2101 accctgacag gctgccggtc ggttgccgag atcagtcggg acctgatcca gttctccagg
     2161 atgtagagaa agagagtgaa gggactgact gctgagttcg cccacgggaa gaagacaaaa
     2221 tcttaatagg gtgtgtgatg ccatcctgcc tcggtcccat cctgtccaca ggctcatctc
     2281 ctgcaccctc aaccactcca cccccaatcc ctcatattcc tcaaatgtgc cgatgctctt
     2341 ctttgcctca ctgccttgta tatgctgttc tcttgcctaa aatcctcctc tgaaagaaga
     2401 cttcttaaaa gggcagttca ataatgactg aagtagctag tggattaaaa tttttgaata
     2461 ta
//
LOCUS       XM_032605225             641 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein CDV3 homolog (LOC116740067),
            mRNA.
ACCESSION   XM_032605225
VERSION     XM_032605225.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..641
                     /gene="LOC116740067"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 62% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740067"
     CDS             3..608
                     /gene="LOC116740067"
                     /codon_start=1
                     /product="protein CDV3 homolog"
                     /protein_id="XP_032461116.1"
                     /db_xref="GeneID:116740067"
                     /translation="MAGREAMGPGAATKVVTKDADEWKESEQKEVDYSSLRVQTMQIS
                     EKEEDENEKRENPGDNREEGRGGGGDVEYSSGTWNKTAPVQTSPAPVVVTETPELTMT
                     RGMYRPLGVRLTTARKAPQGLLEIYSDTQFPSPQSTAKHVESQNRDKEMEKSFEVVRH
                     KTRGRDEVSENQALKLQLDNQHAVLENQKSSHTVQLRNGVC"
     misc_feature    57..422
                     /gene="LOC116740067"
                     /note="Carnitine deficiency-associated protein 3; Region:
                     CDV3; pfam15359"
                     /db_xref="CDD:464669"
ORIGIN      
        1 ggatggcagg cagggaggcc atgggccctg gggctgccac caaggttgtg acaaaggatg
       61 cagatgagtg gaaagaatct gagcaaaaag aggttgatta cagcagccta agagttcaaa
      121 caatgcaaat aagtgaaaag gaagaagatg aaaatgaaaa aagagaaaat ccaggtgata
      181 atcgggaaga aggtagaggt ggtggtggtg atgtagaata ttcttcaggt acctggaata
      241 aaacagctcc tgtacaaaca tctcctgctc cagtagttgt tacagaaacc ccagaactga
      301 caatgactag aggcatgtat agacctcttg gggtcaggtt gaccacagca aggaaagcac
      361 cacaaggact actagaaatc tatagtgata cacagttccc atccccgcag tccactgcca
      421 agcatgtaga aagccagaat agggataaag aaatggagaa gagctttgaa gtagtaagac
      481 acaaaactag aggtagggat gaggtttcag aaaaccaggc ccttaaactt cagctagaca
      541 accagcatgc tgtgcttgag aatcagaaga gcagccacac agtacaatta aggaatggtg
      601 tttgctaacc cttctaaggt aactagacca cagctaacca c
//
LOCUS       XM_032605238            5988 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cache domain containing 1 (CACHD1),
            transcript variant X1, mRNA.
ACCESSION   XM_032605238
VERSION     XM_032605238.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5988
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5988
                     /gene="CACHD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116740072"
     CDS             599..4465
                     /gene="CACHD1"
                     /codon_start=1
                     /product="VWFA and cache domain-containing protein 1
                     isoform X1"
                     /protein_id="XP_032461129.1"
                     /db_xref="GeneID:116740072"
                     /translation="MAREPEEEEAAEAAALARGGRGSLGRAGARRPPLWLLCLAAGWL
                     LGAGADADFSILDEAQVLASQMRRLAAEELGVVTMQRIFNSFVYTEKISNGESEVQQL
                     AKKIREKFNRYLDVVNRNKQVVEASYTAHLTSPLTAIQDCCTIPPSMMEFDGNFNTNV
                     SRTISCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKF
                     RCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHD
                     KISMLTVADTVRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSLDSPTQHAVGFQKA
                     FQLIRSTNNSTKFQANTDMVIIYLSAGITSKDSSEEDKKATLRVISEENSFLNNSVMI
                     LTYALMNDGVTGLKELAFLRDLAEQNSGKYGVLDRTALPVIKGSMMVLNQLSNLETTV
                     GRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLAYILE
                     DVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQN
                     ILSLPLGSQIIAVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPE
                     IPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTVMLSAGSFSSPYEH
                     LSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNT
                     YIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVGGAGY
                     VVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIME
                     DRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQR
                     FYKFNTSLVGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLC
                     LNCHRMEQNECECPCECPLEVNECTGNLTNAENRNPSCEVHQEPVTYTAIDPGLQEAL
                     HQCVNSRCSQRMESGDCFGVLDCEWCMVDSDGKTHLDKSYCAPQKECFGGIVGAKSPY
                     VDDMGAIGDEVVTLNMIKSAPVGPVAGGIMGCIMVLVLAVYAYRHQIHRRSHQHMSPL
                     AAQEMSVRMSNLENDRDERDDDGHEDRGIISNTRFIAAVIERHAHSPERRRRYWGRSG
                     TESDHGYSTMSPQEDSENPPCTNDPLSAGVDVGNHDEDLELDTPPQTAALLSHKFHHY
                     RLHHPTLHHSHHLQAAVTVHTVDAEC"
     misc_feature    905..1252
                     /gene="CACHD1"
                     /note="VWA N-terminal; Region: VWA_N; pfam08399"
                     /db_xref="CDD:462464"
     misc_feature    1277..1864
                     /gene="CACHD1"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
     misc_feature    order(1340..1342,1568..1570,1694..1696)
                     /gene="CACHD1"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238119"
     misc_feature    <1985..2107
                     /gene="CACHD1"
                     /note="Sensor domains of Histidine Kinase receptors;
                     Region: HK_sensor; cl38916"
                     /db_xref="CDD:365792"
     misc_feature    2660..3244
                     /gene="CACHD1"
                     /note="Cache domain; Region: dCache_1; pfam02743"
                     /db_xref="CDD:460673"
ORIGIN      
        1 ggagtcggag cgcagcgtgg tggcaccaga cacctccctt tcccccgtcg ctggctttct
       61 ttctttcagt gtgctgtttt ttgtttattt gtttttgttt ttttaaacct ccccctctcc
      121 cgcctcgctc gggtggctgc cccagcgtag cagcctgatc gccgctcctc ctccgcgggt
      181 gcagccgccc gccctcgccg ccgccgccgc ctcgctcggc ggggacccgc gggaagcgaa
      241 agctcggcgg ctccgcctgt cagccccgcg gccacagacc cggtgcggac gccgcagctc
      301 ttccagccgt ccgccgcacc gcgggggccg cgccggcgcc ggggtcctgc ggacggctgg
      361 ggcggccgct tcctctcccg ccgcggccac cggggcccgg agatggtggc cgcccgcgct
      421 cccgcgccgt agctgggcgc cccctaagtt cgggagccgc ggcggcgctg agaggcggct
      481 gcagaagggc gagaaagttt tgccgggtgc gcggagcggg ccctgggcgc acctcccgga
      541 gctccctccc cgcttcccgg cgcctggagc ccgtcggcgg ggagtggggg taggcggcat
      601 ggcccgcgag ccggaggaag aggaggcggc ggaggcggcc gccctggccc gcgggggtcg
      661 gggctcgctc ggccgggctg gggcgcggag accgcccctc tggctgctct gcctggccgc
      721 gggctggctg ctgggcgccg gggccgacgc cgacttctcc atcctggacg aggcgcaagt
      781 gctggcgagc cagatgcgga ggctggcggc cgaggagctg ggggtcgtca ccatgcagcg
      841 gatattcaac tcctttgttt acactgagaa aatctcaaat ggagaaagtg aagtacagca
      901 gctagccaaa aaaatccgag agaagttcaa ccgttacttg gatgtggtca accggaacaa
      961 gcaagttgta gaagcatcct acacggctca cctgacctct cctctaactg cgattcaaga
     1021 ctgctgtact atcccacctt ctatgatgga atttgatggg aactttaata ccaatgtatc
     1081 tagaacaatt agttgtgatc gactgtctac tactgttaat agccgggcct tcaatccagg
     1141 acgagactta aattcagttc ttgcagacaa cctgaaatcc aaccctggaa ttaagtggca
     1201 gtatttcagt tcagaagaag gaattttcac tgttttccca gcacacaagt tccggtgtaa
     1261 gggcagctat gagcatcgca gtagacctat ctacgtctcc actgtccggc cgcagtcaaa
     1321 gcacatagta gtgatcctgg accacggggc ttccgtcaca gacacccagc ttcagattgc
     1381 caaggacgct gcccaggtca tcctcagcgc catcgatgaa cacgataaga tctccatgct
     1441 gactgtggca gacaccgtca ggacttgctc acttgaccag tgctataaga cattcctgtc
     1501 tccagccacc agtgagacaa aaaggaaaat gtccaccttc gtcagcagcg tcaagtcttt
     1561 ggacagccct acccagcacg cggtgggatt tcaaaaggca tttcagctga ttcgaagcac
     1621 caacaatagc accaagttcc aagcaaatac agacatggtc atcatttacc tgtctgctgg
     1681 cattacatca aaggactctt cagaagaaga taaaaaggcg actctccgtg tcatcagtga
     1741 agagaatagc tttctaaaca actccgtaat gattctcacc tacgccctca tgaacgatgg
     1801 ggtgactggt ttgaaagagc tggcttttct gagagatctt gccgaacaga actctgggaa
     1861 gtatggcgtg ttggaccgga cagccttgcc tgtgattaag ggcagcatga tggtgctgaa
     1921 ccagctgagt aacctggaga ccacagttgg caggttctat accaaccttc ccaaccggat
     1981 gattgacgaa gctgtcttta gcctcccctt ctctgatgag atgggagatg gtttgataat
     2041 gactgtgagc aaaccctgtt attttggaaa cctccttctg ggaattgtag gagtggatgt
     2101 gaacttggct tacatccttg aagatgtgac gtattaccaa gattctttgg cttcctatac
     2161 ttttctcata gatgacaaag ggtataccct tatgcaccca tctcttacca ggccatattt
     2221 actatcggaa cccccccttc atactgatat catccattat gaaaatatcc ccaaatttga
     2281 gttggtgcgg caaaatatcc taagcctccc tctgggcagc cagattatcg cagtccctgt
     2341 gaactcatcc ctgtcctggc acataaacaa gctgagagaa actggaaagg aggcctacaa
     2401 cgttagctat gcctggaaga tggtgcaaga cacttccttc attctctgta ttgtggtgat
     2461 acaaccggaa atacctgtca aacaactgaa gaacctcaac actgtcccca gcagcaagct
     2521 gctgtaccac cggctggacc tcctgggcca gcctagcgct tgcctccact tcaaacagct
     2581 ggccacgcta gaaagtccaa ccgtcatgct gtctgctggc agcttttcct ccccctatga
     2641 gcacctcagc cagccggaga caaagcgcat ggtggaacac tacacagcct atctcagcga
     2701 caacacccgc ctcattgcta acccggggct caaattctct gtcagaaatg aagtaatggc
     2761 taccagccac gtcacagatg aatggatgac acaaatggaa atgagtagcc tgaacactta
     2821 cattgtccgc cgttacatag caacgcccaa tggcgtcctc agaatttatc ctggttccct
     2881 catggacaaa gcatttgatc ccactaggag acaatggtat ctccacgcag tagctaatcc
     2941 aggtttgatt tctttgactg gaccttactt agacgttgga ggagctggct atgtagtgac
     3001 catcagtcat acaattcatt catccagtac acagctgtct tccgggcata ctgtggctgt
     3061 gatgggcatt gacttcacgc ttcgatactt ctacaaggtt ctgatggact tattaccagt
     3121 ttgtaaccaa gatggtggca acaaaataag gtgcttcata atggaggaca ggggttatct
     3181 ggtggcacat ccaaccctca ttgaccccaa aggacatgca cccgtggaac agcagcacat
     3241 cacccacaag gagcccctgg tagcaaatga catcctgaac caccccaact ttgtaaagaa
     3301 gaacctgtgc aacagcttca gtgacagaac ggtccagagg ttttataaat tcaacacgag
     3361 cctagtgggg gatttgacaa accttgtgca cggcagtcac tgttctaaat acagactggc
     3421 gaggatcccg ggaaccaatg catttgtcgg cattgtcaac gaaacgtgtg actctcttgc
     3481 cttctgtgct tgtagcatgg tggaccggct ctgtctcaac tgtcaccgaa tggaacaaaa
     3541 tgaatgtgaa tgtccttgtg agtgccctct agaggtcaat gagtgcactg gcaacctcac
     3601 caatgcagag aacagaaacc caagctgtga agtccaccag gagccagtga cgtacacggc
     3661 tattgaccct ggcctgcagg aggctcttca ccagtgtgtc aacagcaggt gcagtcagag
     3721 gatggagagt ggggactgct ttggtgtgct ggattgtgaa tggtgcatgg tagacagcga
     3781 tggcaagacc cacctagaca aatcctactg tgcgccccag aaagaatgct tcggggggat
     3841 cgttggagcc aaaagtccct atgttgatga catgggagca ataggtgatg aggttgtcac
     3901 attgaacatg attaaaagtg cccctgtggg tccagtggct ggaggcatca tgggctgcat
     3961 catggtcttg gtcctggccg tgtatgcata ccgtcatcag attcatcgcc ggagtcatca
     4021 gcatatgtct cctcttgctg cccaagaaat gtcagtgcgt atgtccaacc tggagaatga
     4081 cagagatgaa agggatgatg acggccacga agacagaggc atcatcagca atactcgatt
     4141 tatagctgcg gtcatcgaac ggcatgcaca cagtccagaa aggaggcgtc gctactgggg
     4201 tcgctcagga acagaaagcg atcatggtta cagcaccatg agcccacagg aagacagcga
     4261 aaaccctccg tgcaccaacg accccttgtc ggccggggtg gacgtgggaa accacgatga
     4321 agacttggag ttggacaccc cacctcagac tgctgccctt ctaagtcaca agttccacca
     4381 ctaccgcctt caccacccca cgctgcatca cagccaccac ctgcaggcgg ccgtgaccgt
     4441 acacactgtc gacgcagaat gctaacctcc tcacctccat cagaagatga gatctgggag
     4501 atatggaatg ttctggaggg agaaagagcc agcatcaaat ccacttgtgt ctgtgctctg
     4561 tctagagtcg tttaactcgt tttcctgcct gttaatacat ttcaaaacaa gagaaacaac
     4621 gacagaatca catttgtgaa gatgcaaggc tggttgtgaa atggagggga aatacgtctg
     4681 attaatgaac ctgccataat accaacggaa tgaacagaag caaacctcta aacagagatg
     4741 gaacctacaa gtgaaacatt gggagccttg gttaagctga gccaggggaa tgttccgagg
     4801 agcccgaaac atttggctct ccttaactgg aagagagaaa aatatgctcc agcggagact
     4861 ggcaacgtgg cacatgcaga gagaaatgtg tgctttgaag atttcacctg gtttcttagc
     4921 ggtacctaga taccacagtt gctgtatgga actcatgtta agctctaaat gatgcatctc
     4981 aaaatttcta agtaaaggat tatttttcta ctatttattg aactttcaaa cattctcaaa
     5041 ctttggggga aagaaaagga aacacatgag aaaatttcac cagttatccc tagctgtttt
     5101 gtgtataatg aagtggttct ttgattaaga agttttagat cttatttaac tgataccatc
     5161 ccactgcctc actccacaaa aatggggaaa tgaagaaatc tttctctctg acttgtttac
     5221 atacattttc tttagaacat catttcatgg aaatagatct tgatttgcaa tgcagtattc
     5281 ttttctgtgt ttgacagagg tggtgacaga ggtggggggt gggcagagga atccaggaag
     5341 cttttaaaga aatgttatgt ttcttttgaa ctaatttcca tttcccatac agtgctttcc
     5401 ttaggtttct acgaaaccta atattacacc cccagccttt cagctaaagg agggttggat
     5461 ttattctcct tgttttagag actataaatt ttttaatgtc ccattttgat tctgagaata
     5521 tggaacgcat aaaggaagaa gtttttcaaa ttcaaaattt tgattccaaa ataaagattt
     5581 cttttgaaat catagtttaa agctgctgcc agtcctccaa gaagataccc accaaactgc
     5641 tttgtgatgt atacagaggg tgatgaaatc tggctcatac aacatggggc attgtaatct
     5701 taaagtagtg ttctaattac agtgatgtat tttagattca cattttgtga tccaaatatg
     5761 ttataaagac attcttgcac cgtgtgtgtg gtaaatctcc atttatatgt agttggaaaa
     5821 aaattcactg aataatgttt taatgatagg gtattacgat ataatgtaaa aaaaaaataa
     5881 aagtggttct tcagcagtac agaaagtcaa ctctatgtgt gctatcagga aacctcttca
     5941 tactgtgtat aaaattgcag tctagtgaaa taaactgtat gaacggac
//
LOCUS       XM_032605247            5865 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cache domain containing 1 (CACHD1),
            transcript variant X2, mRNA.
ACCESSION   XM_032605247
VERSION     XM_032605247.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5865
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5865
                     /gene="CACHD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740072"
     CDS             599..4342
                     /gene="CACHD1"
                     /codon_start=1
                     /product="VWFA and cache domain-containing protein 1
                     isoform X2"
                     /protein_id="XP_032461138.1"
                     /db_xref="GeneID:116740072"
                     /translation="MAREPEEEEAAEAAALARGGRGSLGRAGARRPPLWLLCLAAGWL
                     LGAGADADFSILDEAQVLASQMRRLAAEELGVVTMQRIFNSFVYTEKISNGESEVQQL
                     AKKIREKFNRYLDVVNRNKQVVEASYTAHLTSPLTAIQDCCTIPPSMMEFDGNFNTNV
                     SRTISCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKF
                     RCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHD
                     KISMLTVADTVRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSLDSPTQHAVGFQKA
                     FQLIRSTNNSTKFQANTDMVIIYLSAGITSKDSSEEDKKATLRVISEENSFLNNSVMI
                     LTYALMNDGVTGLKELAFLRDLAEQNSGKYGVLDRTALPVIKGSMMVLNQLSNLETTV
                     GRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLAYILE
                     DVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQN
                     ILSLPLGSQIIAVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPE
                     IPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTVMLSAGSFSSPYEH
                     LSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNT
                     YIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVGGAGY
                     VVTISHTIHSSRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPN
                     FVKKNLCNSFSDRTVQRFYKFNTSLVGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNE
                     TCDSLAFCACSMVDRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENRNPSCEVH
                     QEPVTYTAIDPGLQEALHQCVNSRCSQRMESGDCFGVLDCEWCMVDSDGKTHLDKSYC
                     APQKECFGGIVGAKSPYVDDMGAIGDEVVTLNMIKSAPVGPVAGGIMGCIMVLVLAVY
                     AYRHQIHRRSHQHMSPLAAQEMSVRMSNLENDRDERDDDGHEDRGIISNTRFIAAVIE
                     RHAHSPERRRRYWGRSGTESDHGYSTMSPQEDSENPPCTNDPLSAGVDVGNHDEDLEL
                     DTPPQTAALLSHKFHHYRLHHPTLHHSHHLQAAVTVHTVDAEC"
     misc_feature    905..1252
                     /gene="CACHD1"
                     /note="VWA N-terminal; Region: VWA_N; pfam08399"
                     /db_xref="CDD:462464"
     misc_feature    1277..1864
                     /gene="CACHD1"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
     misc_feature    order(1340..1342,1568..1570,1694..1696)
                     /gene="CACHD1"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238119"
     misc_feature    <1985..2107
                     /gene="CACHD1"
                     /note="Sensor domains of Histidine Kinase receptors;
                     Region: HK_sensor; cl38916"
                     /db_xref="CDD:365792"
ORIGIN      
        1 ggagtcggag cgcagcgtgg tggcaccaga cacctccctt tcccccgtcg ctggctttct
       61 ttctttcagt gtgctgtttt ttgtttattt gtttttgttt ttttaaacct ccccctctcc
      121 cgcctcgctc gggtggctgc cccagcgtag cagcctgatc gccgctcctc ctccgcgggt
      181 gcagccgccc gccctcgccg ccgccgccgc ctcgctcggc ggggacccgc gggaagcgaa
      241 agctcggcgg ctccgcctgt cagccccgcg gccacagacc cggtgcggac gccgcagctc
      301 ttccagccgt ccgccgcacc gcgggggccg cgccggcgcc ggggtcctgc ggacggctgg
      361 ggcggccgct tcctctcccg ccgcggccac cggggcccgg agatggtggc cgcccgcgct
      421 cccgcgccgt agctgggcgc cccctaagtt cgggagccgc ggcggcgctg agaggcggct
      481 gcagaagggc gagaaagttt tgccgggtgc gcggagcggg ccctgggcgc acctcccgga
      541 gctccctccc cgcttcccgg cgcctggagc ccgtcggcgg ggagtggggg taggcggcat
      601 ggcccgcgag ccggaggaag aggaggcggc ggaggcggcc gccctggccc gcgggggtcg
      661 gggctcgctc ggccgggctg gggcgcggag accgcccctc tggctgctct gcctggccgc
      721 gggctggctg ctgggcgccg gggccgacgc cgacttctcc atcctggacg aggcgcaagt
      781 gctggcgagc cagatgcgga ggctggcggc cgaggagctg ggggtcgtca ccatgcagcg
      841 gatattcaac tcctttgttt acactgagaa aatctcaaat ggagaaagtg aagtacagca
      901 gctagccaaa aaaatccgag agaagttcaa ccgttacttg gatgtggtca accggaacaa
      961 gcaagttgta gaagcatcct acacggctca cctgacctct cctctaactg cgattcaaga
     1021 ctgctgtact atcccacctt ctatgatgga atttgatggg aactttaata ccaatgtatc
     1081 tagaacaatt agttgtgatc gactgtctac tactgttaat agccgggcct tcaatccagg
     1141 acgagactta aattcagttc ttgcagacaa cctgaaatcc aaccctggaa ttaagtggca
     1201 gtatttcagt tcagaagaag gaattttcac tgttttccca gcacacaagt tccggtgtaa
     1261 gggcagctat gagcatcgca gtagacctat ctacgtctcc actgtccggc cgcagtcaaa
     1321 gcacatagta gtgatcctgg accacggggc ttccgtcaca gacacccagc ttcagattgc
     1381 caaggacgct gcccaggtca tcctcagcgc catcgatgaa cacgataaga tctccatgct
     1441 gactgtggca gacaccgtca ggacttgctc acttgaccag tgctataaga cattcctgtc
     1501 tccagccacc agtgagacaa aaaggaaaat gtccaccttc gtcagcagcg tcaagtcttt
     1561 ggacagccct acccagcacg cggtgggatt tcaaaaggca tttcagctga ttcgaagcac
     1621 caacaatagc accaagttcc aagcaaatac agacatggtc atcatttacc tgtctgctgg
     1681 cattacatca aaggactctt cagaagaaga taaaaaggcg actctccgtg tcatcagtga
     1741 agagaatagc tttctaaaca actccgtaat gattctcacc tacgccctca tgaacgatgg
     1801 ggtgactggt ttgaaagagc tggcttttct gagagatctt gccgaacaga actctgggaa
     1861 gtatggcgtg ttggaccgga cagccttgcc tgtgattaag ggcagcatga tggtgctgaa
     1921 ccagctgagt aacctggaga ccacagttgg caggttctat accaaccttc ccaaccggat
     1981 gattgacgaa gctgtcttta gcctcccctt ctctgatgag atgggagatg gtttgataat
     2041 gactgtgagc aaaccctgtt attttggaaa cctccttctg ggaattgtag gagtggatgt
     2101 gaacttggct tacatccttg aagatgtgac gtattaccaa gattctttgg cttcctatac
     2161 ttttctcata gatgacaaag ggtataccct tatgcaccca tctcttacca ggccatattt
     2221 actatcggaa cccccccttc atactgatat catccattat gaaaatatcc ccaaatttga
     2281 gttggtgcgg caaaatatcc taagcctccc tctgggcagc cagattatcg cagtccctgt
     2341 gaactcatcc ctgtcctggc acataaacaa gctgagagaa actggaaagg aggcctacaa
     2401 cgttagctat gcctggaaga tggtgcaaga cacttccttc attctctgta ttgtggtgat
     2461 acaaccggaa atacctgtca aacaactgaa gaacctcaac actgtcccca gcagcaagct
     2521 gctgtaccac cggctggacc tcctgggcca gcctagcgct tgcctccact tcaaacagct
     2581 ggccacgcta gaaagtccaa ccgtcatgct gtctgctggc agcttttcct ccccctatga
     2641 gcacctcagc cagccggaga caaagcgcat ggtggaacac tacacagcct atctcagcga
     2701 caacacccgc ctcattgcta acccggggct caaattctct gtcagaaatg aagtaatggc
     2761 taccagccac gtcacagatg aatggatgac acaaatggaa atgagtagcc tgaacactta
     2821 cattgtccgc cgttacatag caacgcccaa tggcgtcctc agaatttatc ctggttccct
     2881 catggacaaa gcatttgatc ccactaggag acaatggtat ctccacgcag tagctaatcc
     2941 aggtttgatt tctttgactg gaccttactt agacgttgga ggagctggct atgtagtgac
     3001 catcagtcat acaattcatt catccaggtg cttcataatg gaggacaggg gttatctggt
     3061 ggcacatcca accctcattg accccaaagg acatgcaccc gtggaacagc agcacatcac
     3121 ccacaaggag cccctggtag caaatgacat cctgaaccac cccaactttg taaagaagaa
     3181 cctgtgcaac agcttcagtg acagaacggt ccagaggttt tataaattca acacgagcct
     3241 agtgggggat ttgacaaacc ttgtgcacgg cagtcactgt tctaaataca gactggcgag
     3301 gatcccggga accaatgcat ttgtcggcat tgtcaacgaa acgtgtgact ctcttgcctt
     3361 ctgtgcttgt agcatggtgg accggctctg tctcaactgt caccgaatgg aacaaaatga
     3421 atgtgaatgt ccttgtgagt gccctctaga ggtcaatgag tgcactggca acctcaccaa
     3481 tgcagagaac agaaacccaa gctgtgaagt ccaccaggag ccagtgacgt acacggctat
     3541 tgaccctggc ctgcaggagg ctcttcacca gtgtgtcaac agcaggtgca gtcagaggat
     3601 ggagagtggg gactgctttg gtgtgctgga ttgtgaatgg tgcatggtag acagcgatgg
     3661 caagacccac ctagacaaat cctactgtgc gccccagaaa gaatgcttcg gggggatcgt
     3721 tggagccaaa agtccctatg ttgatgacat gggagcaata ggtgatgagg ttgtcacatt
     3781 gaacatgatt aaaagtgccc ctgtgggtcc agtggctgga ggcatcatgg gctgcatcat
     3841 ggtcttggtc ctggccgtgt atgcataccg tcatcagatt catcgccgga gtcatcagca
     3901 tatgtctcct cttgctgccc aagaaatgtc agtgcgtatg tccaacctgg agaatgacag
     3961 agatgaaagg gatgatgacg gccacgaaga cagaggcatc atcagcaata ctcgatttat
     4021 agctgcggtc atcgaacggc atgcacacag tccagaaagg aggcgtcgct actggggtcg
     4081 ctcaggaaca gaaagcgatc atggttacag caccatgagc ccacaggaag acagcgaaaa
     4141 ccctccgtgc accaacgacc ccttgtcggc cggggtggac gtgggaaacc acgatgaaga
     4201 cttggagttg gacaccccac ctcagactgc tgcccttcta agtcacaagt tccaccacta
     4261 ccgccttcac caccccacgc tgcatcacag ccaccacctg caggcggccg tgaccgtaca
     4321 cactgtcgac gcagaatgct aacctcctca cctccatcag aagatgagat ctgggagata
     4381 tggaatgttc tggagggaga aagagccagc atcaaatcca cttgtgtctg tgctctgtct
     4441 agagtcgttt aactcgtttt cctgcctgtt aatacatttc aaaacaagag aaacaacgac
     4501 agaatcacat ttgtgaagat gcaaggctgg ttgtgaaatg gaggggaaat acgtctgatt
     4561 aatgaacctg ccataatacc aacggaatga acagaagcaa acctctaaac agagatggaa
     4621 cctacaagtg aaacattggg agccttggtt aagctgagcc aggggaatgt tccgaggagc
     4681 ccgaaacatt tggctctcct taactggaag agagaaaaat atgctccagc ggagactggc
     4741 aacgtggcac atgcagagag aaatgtgtgc tttgaagatt tcacctggtt tcttagcggt
     4801 acctagatac cacagttgct gtatggaact catgttaagc tctaaatgat gcatctcaaa
     4861 atttctaagt aaaggattat ttttctacta tttattgaac tttcaaacat tctcaaactt
     4921 tgggggaaag aaaaggaaac acatgagaaa atttcaccag ttatccctag ctgttttgtg
     4981 tataatgaag tggttctttg attaagaagt tttagatctt atttaactga taccatccca
     5041 ctgcctcact ccacaaaaat ggggaaatga agaaatcttt ctctctgact tgtttacata
     5101 cattttcttt agaacatcat ttcatggaaa tagatcttga tttgcaatgc agtattcttt
     5161 tctgtgtttg acagaggtgg tgacagaggt ggggggtggg cagaggaatc caggaagctt
     5221 ttaaagaaat gttatgtttc ttttgaacta atttccattt cccatacagt gctttcctta
     5281 ggtttctacg aaacctaata ttacaccccc agcctttcag ctaaaggagg gttggattta
     5341 ttctccttgt tttagagact ataaattttt taatgtccca ttttgattct gagaatatgg
     5401 aacgcataaa ggaagaagtt tttcaaattc aaaattttga ttccaaaata aagatttctt
     5461 ttgaaatcat agtttaaagc tgctgccagt cctccaagaa gatacccacc aaactgcttt
     5521 gtgatgtata cagagggtga tgaaatctgg ctcatacaac atggggcatt gtaatcttaa
     5581 agtagtgttc taattacagt gatgtatttt agattcacat tttgtgatcc aaatatgtta
     5641 taaagacatt cttgcaccgt gtgtgtggta aatctccatt tatatgtagt tggaaaaaaa
     5701 ttcactgaat aatgttttaa tgatagggta ttacgatata atgtaaaaaa aaaataaaag
     5761 tggttcttca gcagtacaga aagtcaactc tatgtgtgct atcaggaaac ctcttcatac
     5821 tgtgtataaa attgcagtct agtgaaataa actgtatgaa cggac
//
LOCUS       XM_032605257            4279 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cache domain containing 1 (CACHD1),
            transcript variant X3, mRNA.
ACCESSION   XM_032605257
VERSION     XM_032605257.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4279
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4279
                     /gene="CACHD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740072"
     CDS             599..4234
                     /gene="CACHD1"
                     /codon_start=1
                     /product="VWFA and cache domain-containing protein 1
                     isoform X3"
                     /protein_id="XP_032461148.1"
                     /db_xref="GeneID:116740072"
                     /translation="MAREPEEEEAAEAAALARGGRGSLGRAGARRPPLWLLCLAAGWL
                     LGAGADADFSILDEAQVLASQMRRLAAEELGVVTMQRIFNSFVYTEKISNGESEVQQL
                     AKKIREKFNRYLDVVNRNKQVVEASYTAHLTSPLTAIQDCCTIPPSMMEFDGNFNTNV
                     SRTISCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKF
                     RCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHD
                     KISMLTVADTVRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSLDSPTQHAVGFQKA
                     FQLIRSTNNSTKFQANTDMVIIYLSAGITSKDSSEEDKKATLRVISEENSFLNNSVMI
                     LTYALMNDGVTGLKELAFLRDLAEQNSGKYGVLDRTALPVIKGSMMVLNQLSNLETTV
                     GRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLAYILE
                     DVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQN
                     ILSLPLGSQIIAVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPE
                     IPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTVMLSAGSFSSPYEH
                     LSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNT
                     YIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVGGAGY
                     VVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIME
                     DRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQR
                     FYKFNTSLVGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLC
                     LNCHRMEQNECECPCECPLEVNECTGNLTNAENRNPSCEVHQEPVTYTAIDPGLQEAL
                     HQCVNSRCSQRMESGDCFGVLDCEWCMVDSDGKTHLDKSYCAPQKECFGGIVGAKSPY
                     VDDMGAIGDEVVTLNMIKSAPVGPVAGGIMGCIMVLVLAVYAYRHQIHRRSHQHMSPL
                     AAQEMSVRMSNLENDRDERDDDGHEDRGIISNTRFIAAVIERHAHSPERRRRYWGRSG
                     TESDHES"
     misc_feature    905..1252
                     /gene="CACHD1"
                     /note="VWA N-terminal; Region: VWA_N; pfam08399"
                     /db_xref="CDD:462464"
     misc_feature    1277..1864
                     /gene="CACHD1"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
     misc_feature    order(1340..1342,1568..1570,1694..1696)
                     /gene="CACHD1"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238119"
     misc_feature    <1985..2107
                     /gene="CACHD1"
                     /note="Sensor domains of Histidine Kinase receptors;
                     Region: HK_sensor; cl38916"
                     /db_xref="CDD:365792"
     misc_feature    2660..3244
                     /gene="CACHD1"
                     /note="Cache domain; Region: dCache_1; pfam02743"
                     /db_xref="CDD:460673"
ORIGIN      
        1 ggagtcggag cgcagcgtgg tggcaccaga cacctccctt tcccccgtcg ctggctttct
       61 ttctttcagt gtgctgtttt ttgtttattt gtttttgttt ttttaaacct ccccctctcc
      121 cgcctcgctc gggtggctgc cccagcgtag cagcctgatc gccgctcctc ctccgcgggt
      181 gcagccgccc gccctcgccg ccgccgccgc ctcgctcggc ggggacccgc gggaagcgaa
      241 agctcggcgg ctccgcctgt cagccccgcg gccacagacc cggtgcggac gccgcagctc
      301 ttccagccgt ccgccgcacc gcgggggccg cgccggcgcc ggggtcctgc ggacggctgg
      361 ggcggccgct tcctctcccg ccgcggccac cggggcccgg agatggtggc cgcccgcgct
      421 cccgcgccgt agctgggcgc cccctaagtt cgggagccgc ggcggcgctg agaggcggct
      481 gcagaagggc gagaaagttt tgccgggtgc gcggagcggg ccctgggcgc acctcccgga
      541 gctccctccc cgcttcccgg cgcctggagc ccgtcggcgg ggagtggggg taggcggcat
      601 ggcccgcgag ccggaggaag aggaggcggc ggaggcggcc gccctggccc gcgggggtcg
      661 gggctcgctc ggccgggctg gggcgcggag accgcccctc tggctgctct gcctggccgc
      721 gggctggctg ctgggcgccg gggccgacgc cgacttctcc atcctggacg aggcgcaagt
      781 gctggcgagc cagatgcgga ggctggcggc cgaggagctg ggggtcgtca ccatgcagcg
      841 gatattcaac tcctttgttt acactgagaa aatctcaaat ggagaaagtg aagtacagca
      901 gctagccaaa aaaatccgag agaagttcaa ccgttacttg gatgtggtca accggaacaa
      961 gcaagttgta gaagcatcct acacggctca cctgacctct cctctaactg cgattcaaga
     1021 ctgctgtact atcccacctt ctatgatgga atttgatggg aactttaata ccaatgtatc
     1081 tagaacaatt agttgtgatc gactgtctac tactgttaat agccgggcct tcaatccagg
     1141 acgagactta aattcagttc ttgcagacaa cctgaaatcc aaccctggaa ttaagtggca
     1201 gtatttcagt tcagaagaag gaattttcac tgttttccca gcacacaagt tccggtgtaa
     1261 gggcagctat gagcatcgca gtagacctat ctacgtctcc actgtccggc cgcagtcaaa
     1321 gcacatagta gtgatcctgg accacggggc ttccgtcaca gacacccagc ttcagattgc
     1381 caaggacgct gcccaggtca tcctcagcgc catcgatgaa cacgataaga tctccatgct
     1441 gactgtggca gacaccgtca ggacttgctc acttgaccag tgctataaga cattcctgtc
     1501 tccagccacc agtgagacaa aaaggaaaat gtccaccttc gtcagcagcg tcaagtcttt
     1561 ggacagccct acccagcacg cggtgggatt tcaaaaggca tttcagctga ttcgaagcac
     1621 caacaatagc accaagttcc aagcaaatac agacatggtc atcatttacc tgtctgctgg
     1681 cattacatca aaggactctt cagaagaaga taaaaaggcg actctccgtg tcatcagtga
     1741 agagaatagc tttctaaaca actccgtaat gattctcacc tacgccctca tgaacgatgg
     1801 ggtgactggt ttgaaagagc tggcttttct gagagatctt gccgaacaga actctgggaa
     1861 gtatggcgtg ttggaccgga cagccttgcc tgtgattaag ggcagcatga tggtgctgaa
     1921 ccagctgagt aacctggaga ccacagttgg caggttctat accaaccttc ccaaccggat
     1981 gattgacgaa gctgtcttta gcctcccctt ctctgatgag atgggagatg gtttgataat
     2041 gactgtgagc aaaccctgtt attttggaaa cctccttctg ggaattgtag gagtggatgt
     2101 gaacttggct tacatccttg aagatgtgac gtattaccaa gattctttgg cttcctatac
     2161 ttttctcata gatgacaaag ggtataccct tatgcaccca tctcttacca ggccatattt
     2221 actatcggaa cccccccttc atactgatat catccattat gaaaatatcc ccaaatttga
     2281 gttggtgcgg caaaatatcc taagcctccc tctgggcagc cagattatcg cagtccctgt
     2341 gaactcatcc ctgtcctggc acataaacaa gctgagagaa actggaaagg aggcctacaa
     2401 cgttagctat gcctggaaga tggtgcaaga cacttccttc attctctgta ttgtggtgat
     2461 acaaccggaa atacctgtca aacaactgaa gaacctcaac actgtcccca gcagcaagct
     2521 gctgtaccac cggctggacc tcctgggcca gcctagcgct tgcctccact tcaaacagct
     2581 ggccacgcta gaaagtccaa ccgtcatgct gtctgctggc agcttttcct ccccctatga
     2641 gcacctcagc cagccggaga caaagcgcat ggtggaacac tacacagcct atctcagcga
     2701 caacacccgc ctcattgcta acccggggct caaattctct gtcagaaatg aagtaatggc
     2761 taccagccac gtcacagatg aatggatgac acaaatggaa atgagtagcc tgaacactta
     2821 cattgtccgc cgttacatag caacgcccaa tggcgtcctc agaatttatc ctggttccct
     2881 catggacaaa gcatttgatc ccactaggag acaatggtat ctccacgcag tagctaatcc
     2941 aggtttgatt tctttgactg gaccttactt agacgttgga ggagctggct atgtagtgac
     3001 catcagtcat acaattcatt catccagtac acagctgtct tccgggcata ctgtggctgt
     3061 gatgggcatt gacttcacgc ttcgatactt ctacaaggtt ctgatggact tattaccagt
     3121 ttgtaaccaa gatggtggca acaaaataag gtgcttcata atggaggaca ggggttatct
     3181 ggtggcacat ccaaccctca ttgaccccaa aggacatgca cccgtggaac agcagcacat
     3241 cacccacaag gagcccctgg tagcaaatga catcctgaac caccccaact ttgtaaagaa
     3301 gaacctgtgc aacagcttca gtgacagaac ggtccagagg ttttataaat tcaacacgag
     3361 cctagtgggg gatttgacaa accttgtgca cggcagtcac tgttctaaat acagactggc
     3421 gaggatcccg ggaaccaatg catttgtcgg cattgtcaac gaaacgtgtg actctcttgc
     3481 cttctgtgct tgtagcatgg tggaccggct ctgtctcaac tgtcaccgaa tggaacaaaa
     3541 tgaatgtgaa tgtccttgtg agtgccctct agaggtcaat gagtgcactg gcaacctcac
     3601 caatgcagag aacagaaacc caagctgtga agtccaccag gagccagtga cgtacacggc
     3661 tattgaccct ggcctgcagg aggctcttca ccagtgtgtc aacagcaggt gcagtcagag
     3721 gatggagagt ggggactgct ttggtgtgct ggattgtgaa tggtgcatgg tagacagcga
     3781 tggcaagacc cacctagaca aatcctactg tgcgccccag aaagaatgct tcggggggat
     3841 cgttggagcc aaaagtccct atgttgatga catgggagca ataggtgatg aggttgtcac
     3901 attgaacatg attaaaagtg cccctgtggg tccagtggct ggaggcatca tgggctgcat
     3961 catggtcttg gtcctggccg tgtatgcata ccgtcatcag attcatcgcc ggagtcatca
     4021 gcatatgtct cctcttgctg cccaagaaat gtcagtgcgt atgtccaacc tggagaatga
     4081 cagagatgaa agggatgatg acggccacga agacagaggc atcatcagca atactcgatt
     4141 tatagctgcg gtcatcgaac ggcatgcaca cagtccagaa aggaggcgtc gctactgggg
     4201 tcgctcagga acagaaagcg atcatgaatc atgaagatgc aggctgagaa ctggggatac
     4261 agtgatgaat gaaaaggac
//
LOCUS       XM_032605270            1742 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf141 homolog
            (C1H1orf141), mRNA.
ACCESSION   XM_032605270
VERSION     XM_032605270.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1742
                     /gene="C1H1orf141"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 8%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740079"
     CDS             42..1145
                     /gene="C1H1orf141"
                     /codon_start=1
                     /product="uncharacterized protein C1orf141 homolog"
                     /protein_id="XP_032461161.1"
                     /db_xref="GeneID:116740079"
                     /translation="MAKKILEKLDILDEQAKTLLAIRAKKNFLQGEVKKKISVIPLTF
                     DFQLEFEKDIATSISEAESKITKDRSYGIKKTKRYVSFRNMPEPKKSDFEKSNLRPHF
                     VPTKIKIQEIKSIEPVEEYLKSRSIGSFHYLKDTTEEEHAKPFHELYSQHRQQQCRRT
                     LGSTIFPPVPSIQSNAYKHGKDSIYSTKDNKSIRNDQLNEYSVRKKSLLPLCFEDELK
                     KSNAKIINISPAKTATSYTEENDTNPIIFHETGYVQMLLLTKNRLPPHSMESGNGYPC
                     KRSNLVLERNCETRKSVARGQSTTPSKPKRTLPTTQKKAIQAVSFEVSRRVVDDKLRK
                     KTSKQTFENVSWNKLYNFSQTFSSLTKKICGFP"
     misc_feature    42..1139
                     /gene="C1H1orf141"
                     /note="Domain of unknown function (DUF4545); Region:
                     DUF4545; pfam15078"
                     /db_xref="CDD:464489"
ORIGIN      
        1 agaagggagg atttcccagc aactgaattt actgactgac aatggcaaaa aaaatcttag
       61 agaagttaga tattctggat gagcaagcaa agacactctt ggccataaga gcaaagaaaa
      121 actttcttca gggtgaagta aagaaaaaga tttcagtgat acccctgaca tttgattttc
      181 agttggaatt tgaaaaggat attgctacct ccatatctga ggcagaatca aagatcacaa
      241 aagacagatc atatggcatt aaaaaaacaa aaagatatgt ctccttcaga aatatgcctg
      301 aacctaaaaa gagtgatttt gaaaagtcaa atttaagacc acactttgta ccaacaaaaa
      361 taaaaattca agaaatcaag tcaatagagc cagtagaaga atatctaaaa tcaagatcta
      421 ttggatcttt tcattatctt aaggatacaa ctgaggaaga acatgctaag cccttccatg
      481 aactgtattc acagcataga caacaacaat gtagaagaac attgggctct acaatctttc
      541 ctcctgtacc cagcattcag tctaatgctt ataagcatgg aaaagactct atttacagta
      601 caaaagacaa taaatccatc agaaatgatc agttaaatga gtactcagta agaaagaaaa
      661 gcttgctccc cttgtgcttt gaggatgaac tgaaaaagtc aaatgccaag ataatcaaca
      721 ttagtccagc aaagacagca acttcttaca cggaagaaaa tgatacaaat cccataattt
      781 tccatgagac tggatatgta caaatgttac ttttgacaaa aaacaggctt cctccccatt
      841 ctatggaaag tgggaatggt tacccatgta aaagatcaaa tcttgtttta gaaagaaatt
      901 gtgaaacgcg caaatctgta gctagaggtc aatctactac tccttccaaa cccaaaagaa
      961 ctctgcctac aacacagaag aaagctatac aagcagtatc ttttgaagta agccgtagag
     1021 ttgtagatga taaactaagg aagaaaacta gcaagcagac atttgaaaac gtatcttgga
     1081 ataaactcta taacttttca cagacttttt ccagcctaac aaaaaaaatc tgtgggtttc
     1141 cttgataaaa ctgttattca agaaatgagt gctaaaactg gcaaatttga aaaaatgttt
     1201 tctacagtca aaacaatagc aaattgagtg cctcgcctgt caaatattgc tcaaagcctt
     1261 caaaaaatat actcaaagtc cataaaataa ataatgtaac accattggat gatttgttaa
     1321 acttgtcaag taaaaattaa gcacctcata aaatattgtt tatacagcaa aatttgggta
     1381 acaggaagca aataaagttc caagatcaca gaagaaatcc ttgtctaaat ggtaatgttc
     1441 tagtggatgg tagaagaaaa caaagcatag aaattggaat tacaaaccaa cagtggtata
     1501 ctatttttag taaataagag gacaaaatta ggaaataatg atcaacaaga ggaactagtt
     1561 caggaatttc tcttatctca attagatccc tcaatcatca gcattcctac agtaaagtag
     1621 attcaggacc aggaatggca cagactgact ctggaaattt gccaaataac ggaagctaaa
     1681 taatgtcaat aaccttgctc cataattggt tatcaaacaa gacaaatata ccattaactt
     1741 ga
//
LOCUS       XM_032605282            3643 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus angel homolog 2 (ANGEL2), transcript
            variant X1, mRNA.
ACCESSION   XM_032605282
VERSION     XM_032605282.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3643
                     /gene="ANGEL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740083"
     CDS             168..1802
                     /gene="ANGEL2"
                     /codon_start=1
                     /product="protein angel homolog 2 isoform X1"
                     /protein_id="XP_032461173.1"
                     /db_xref="GeneID:116740083"
                     /translation="MEAWRCVRRGYGRCVVGRGRYPMLPHHQKSLGRDWTAPWENLQR
                     CCWNRHISSCMRWPGHYSRAPYPYFSSRHFSLNWRPPCLFESRTQFQYWNWRPDNLSQ
                     TSLIHLSSYIMNSEGDEPSSKRRKHQGTIKRDWEYICNHNKEKTKILGDKNDDPICED
                     SENKFDFSVMSYNILSQDLLEDNSHLYKHCQRPVLHWSFRFPNILKEIKHYDADVLCL
                     QEVQEDHYGTEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEFYRR
                     DVPLLDRDNVGLVLLLQPKIPSAASPAICVANTHLLYNPRRGDIKLTQLAMLLAEISS
                     VAHQKDGSFCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRIL
                     SIPIWPPNLGISQNCVYEVQQVPKVEKTDSDLTQTQLDKTEVLVTAEKLSSKLQHHFS
                     LSSVYSHYFPDTGIPEVTTCHSRSAITVDYIFYSAEKEGVAGQPGAEVALVGGLKLLA
                     RLSLLTEQDLWTVNGLPNENNSSDHLPLLAKFRLEL"
     misc_feature    234..644
                     /gene="ANGEL2"
                     /note="Protein angel homolog 2 N-terminal; Region:
                     ANGEL2_N; pfam19339"
                     /db_xref="CDD:466047"
     misc_feature    672..1793
                     /gene="ANGEL2"
                     /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
                     superfamily; Region: EEP; cl00490"
                     /db_xref="CDD:469791"
     misc_feature    order(684..686,825..827,1095..1097,1218..1220,1224..1226,
                     1602..1604,1761..1766)
                     /gene="ANGEL2"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197306"
     misc_feature    order(825..827,1761..1763)
                     /gene="ANGEL2"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:197306"
     misc_feature    order(1095..1097,1224..1226,1764..1766)
                     /gene="ANGEL2"
                     /note="putative phosphate binding site [ion binding];
                     other site"
                     /db_xref="CDD:197306"
ORIGIN      
        1 gggacttggc ggcgggcaac actgaacctc ccagcatgct ttgcagcctg gcggagaggc
       61 ccgacgccta gtgatgggga gccctcggtg ctctacgccg ccaaatcggc tgtagcggtt
      121 gaggttgagc ccggggcctg ggaattggac gctcgcagag ggggaaaatg gaagcgtggc
      181 gctgtgtgag gagaggctac ggccgctgtg tggtggggag aggcagatac cccatgttac
      241 cccatcacca gaagagtctc ggcagagact ggactgcacc gtgggagaat ctgcaaaggt
      301 gttgctggaa cagacatatt tctagttgta tgaggtggcc tggacattat tctcgtgctc
      361 cttacccata cttcagtagt aggcattttt cactaaattg gagaccacct tgtttgtttg
      421 agtctagaac tcagtttcag tactggaact ggagacctga caacctgagc cagacatctt
      481 tgattcatct ctctagttac atcatgaact ctgagggtga tgagccttca tcaaaacgaa
      541 gaaaacacca aggcacaata aaacgggatt gggaatatat atgtaaccat aataaagaaa
      601 aaacgaagat cctaggagac aaaaatgatg accccatatg tgaagacagt gagaacaagt
      661 ttgacttttc agtgatgtcc tataatatac tttctcaaga tttattggaa gacaattctc
      721 acctttataa acactgccag cggccagtat tacactggag ttttaggttt cccaatattc
      781 tgaaagaaat taaacactat gatgcagatg tactttgttt gcaagaagtg caagaagatc
      841 attatggaac agagatcagg ccaagtttgg aatcattggg ttatcactgt gaatacaaga
      901 tgcggacagg aaggaaacct gatggctgtg ccatttgctt caaacattcc aaattttccc
      961 tcttatcagt gaacccagtg gaattctacc gccgtgatgt tcctctattg gacagagaca
     1021 atgttggatt agtgttactc ttgcagccca aaatcccaag tgctgcctcc cctgcgatct
     1081 gtgtggctaa cacacatctg ttgtataatc caaggcgagg tgatattaaa ctgacccaac
     1141 tggcaatgct tctggcagag atttccagtg ttgcccatca gaaagatggc agcttctgcc
     1201 ccattgttat gtgtggtgac tttaattctg ttcctggttc tccactgtat agttttataa
     1261 aggaagggaa attgaattat gaaggacttg ccataggaaa ggtatctggc caggaacagt
     1321 cttcacgggg acaaagaatt ttatctattc caatttggcc cccaaaccta ggtatctcac
     1381 agaactgtgt gtatgaggta cagcaggtac caaaagtaga aaagacagac agtgatctga
     1441 cacaaacaca gctggacaaa acagaggtcc tagtaacagc tgaaaaatta tcttcaaagt
     1501 tacagcacca tttcagcttg tcatctgttt attcacatta ttttcctgac actggaattc
     1561 cagaagtgac cacctgtcat tcccgaagtg ccataactgt ggattatatt ttctattctg
     1621 ctgaaaagga aggtgttgct gggcagccag gagccgaagt tgctttggtt ggtggcttga
     1681 aacttctagc tagactgtca cttcttacag aacaagactt atggactgtt aatggacttc
     1741 caaacgaaaa taactcttcg gatcatctgc ctttattggc caaattcaga cttgagctct
     1801 gacttctttt tttttttttt tttttttttt ttcccggtac gcgggcctct cactgttgtg
     1861 gcatctcccg ttgcagagca caggctccag acgcgcaggc cagcggccat ggctcatggg
     1921 cctagccgct tcacggcatg tgggctcttc ccagggcacg aacccgtgtc ccctgcatcg
     1981 gcaggtggac tctcaaccac tgcgccacca gggaagcccc ttgctcttct ttgattacat
     2041 atatactgtg ctttcccatt tatgttcttt ttcaaagaat gtaaagttgt tcttaagagt
     2101 ttgcatgtta cttattttta cgctatggaa tttctgaaga ggttatgtta aatgcttgaa
     2161 acaggtagca gaagaaacaa gtttacaaca attttctttt tttgataatg aaaaaatatt
     2221 ttcctgacaa gtgagatcta aacactcttt attgtaaaag agttgtaaat atttattata
     2281 aattccagta aaattgacag tgatttttaa atatagtgca gtttctttag tcctcttagt
     2341 aaagaatttc atgtttttgg caagctttac agtggatcta aaatatcttt gagttcttac
     2401 aaaccacaac tcatttccct tgcagaggcc caatttcatc atgagaatca tatgtttgtt
     2461 gagtcctaag tagttcatct cagaaatcat cgggttcaca agtgtccagc caaccactgt
     2521 agtttgtttt tgagggggct cagtaatgct ttccaaaatt gtacagattg cttaatccat
     2581 cttcttacta tcctgagcca tgtaatatgc ctgcattgta ttggggaaat ataggtcacc
     2641 ataactagta agatgaagtg ctttacacaa gcccactttc catcctgtca tagaccattg
     2701 caggaaccta ggagaggcag agattggggt tatgccttgt gtttccctag taattttttt
     2761 tttttttata ttcagtttca agaaaagatc cctggattgg gaaagatatt ttattttact
     2821 taactaatcc tgtagaaatt tattttatta ggaaacttat atttggaaca aagtggcagc
     2881 tataaggtta tttttatttt gccttagaaa taagaggaag ccagcaaaac tctagagaga
     2941 tatcaacttg gagacctaat gctcgtaagt agtaacttta actgttttgt tttgttgtgg
     3001 tttaactgtt ttgtttctaa aatgttttat catgatgcag cagtgtgaga tgatgctgat
     3061 tttttttata aagtggtgaa gagcaggcct aaaatatcct gtagttggct ctgtataagt
     3121 gtttgaatca aaaattttta aacataattg aaaatttcct tttttagaca ttgggatcaa
     3181 agaattatgt acatttttac taagtaattt tatattgaat tatactgaat tatacaatgg
     3241 gttttacagt gggttttttt ttacagtggg ttttcttaat agaatacttc atcttaaatt
     3301 agaaagcagc agctacttta tagtcttgga ctttaaaagt ttttctacta aagtatttac
     3361 tacaatttta aaaaaataaa ccagataaat acccccaaaa ggcatgtggg ttacaaggat
     3421 ttgcctagta aaaattatag cgataagcaa gtacttttaa ctgtttaatg tctttcactc
     3481 acagtattaa ctatagttct aggatttttc atttcgtagt aagttttcag aaaattgtat
     3541 gttctaatta gcagatattg tcatcatcga ataataacag cacatagtat atttatcccc
     3601 ttttagtatt ggggaaagaa aaatgaagat tcattgatta cta
//
LOCUS       XM_032605291            3553 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus angel homolog 2 (ANGEL2), transcript
            variant X2, mRNA.
ACCESSION   XM_032605291
VERSION     XM_032605291.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3553
                     /gene="ANGEL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740083"
     CDS             108..1712
                     /gene="ANGEL2"
                     /codon_start=1
                     /product="protein angel homolog 2 isoform X2"
                     /protein_id="XP_032461182.1"
                     /db_xref="GeneID:116740083"
                     /translation="MGRVRAFRTRYPMLPHHQKSLGRDWTAPWENLQRCCWNRHISSC
                     MRWPGHYSRAPYPYFSSRHFSLNWRPPCLFESRTQFQYWNWRPDNLSQTSLIHLSSYI
                     MNSEGDEPSSKRRKHQGTIKRDWEYICNHNKEKTKILGDKNDDPICEDSENKFDFSVM
                     SYNILSQDLLEDNSHLYKHCQRPVLHWSFRFPNILKEIKHYDADVLCLQEVQEDHYGT
                     EIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEFYRRDVPLLDRDNV
                     GLVLLLQPKIPSAASPAICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGSFC
                     PIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRILSIPIWPPNLG
                     ISQNCVYEVQQVPKVEKTDSDLTQTQLDKTEVLVTAEKLSSKLQHHFSLSSVYSHYFP
                     DTGIPEVTTCHSRSAITVDYIFYSAEKEGVAGQPGAEVALVGGLKLLARLSLLTEQDL
                     WTVNGLPNENNSSDHLPLLAKFRLEL"
     misc_feature    144..554
                     /gene="ANGEL2"
                     /note="Protein angel homolog 2 N-terminal; Region:
                     ANGEL2_N; pfam19339"
                     /db_xref="CDD:466047"
     misc_feature    582..1703
                     /gene="ANGEL2"
                     /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
                     superfamily; Region: EEP; cl00490"
                     /db_xref="CDD:469791"
     misc_feature    order(594..596,735..737,1005..1007,1128..1130,1134..1136,
                     1512..1514,1671..1676)
                     /gene="ANGEL2"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197306"
     misc_feature    order(735..737,1671..1673)
                     /gene="ANGEL2"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:197306"
     misc_feature    order(1005..1007,1134..1136,1674..1676)
                     /gene="ANGEL2"
                     /note="putative phosphate binding site [ion binding];
                     other site"
                     /db_xref="CDD:197306"
ORIGIN      
        1 cgtcaggacg gacctccgga gaccccgagg gataggtaaa cccggcgcgc agccggaggg
       61 gcgctcggcc cacggggtcc agggcccgcg cgcggagcgc gtcggccatg ggccgggttc
      121 gtgctttccg gaccagatac cccatgttac cccatcacca gaagagtctc ggcagagact
      181 ggactgcacc gtgggagaat ctgcaaaggt gttgctggaa cagacatatt tctagttgta
      241 tgaggtggcc tggacattat tctcgtgctc cttacccata cttcagtagt aggcattttt
      301 cactaaattg gagaccacct tgtttgtttg agtctagaac tcagtttcag tactggaact
      361 ggagacctga caacctgagc cagacatctt tgattcatct ctctagttac atcatgaact
      421 ctgagggtga tgagccttca tcaaaacgaa gaaaacacca aggcacaata aaacgggatt
      481 gggaatatat atgtaaccat aataaagaaa aaacgaagat cctaggagac aaaaatgatg
      541 accccatatg tgaagacagt gagaacaagt ttgacttttc agtgatgtcc tataatatac
      601 tttctcaaga tttattggaa gacaattctc acctttataa acactgccag cggccagtat
      661 tacactggag ttttaggttt cccaatattc tgaaagaaat taaacactat gatgcagatg
      721 tactttgttt gcaagaagtg caagaagatc attatggaac agagatcagg ccaagtttgg
      781 aatcattggg ttatcactgt gaatacaaga tgcggacagg aaggaaacct gatggctgtg
      841 ccatttgctt caaacattcc aaattttccc tcttatcagt gaacccagtg gaattctacc
      901 gccgtgatgt tcctctattg gacagagaca atgttggatt agtgttactc ttgcagccca
      961 aaatcccaag tgctgcctcc cctgcgatct gtgtggctaa cacacatctg ttgtataatc
     1021 caaggcgagg tgatattaaa ctgacccaac tggcaatgct tctggcagag atttccagtg
     1081 ttgcccatca gaaagatggc agcttctgcc ccattgttat gtgtggtgac tttaattctg
     1141 ttcctggttc tccactgtat agttttataa aggaagggaa attgaattat gaaggacttg
     1201 ccataggaaa ggtatctggc caggaacagt cttcacgggg acaaagaatt ttatctattc
     1261 caatttggcc cccaaaccta ggtatctcac agaactgtgt gtatgaggta cagcaggtac
     1321 caaaagtaga aaagacagac agtgatctga cacaaacaca gctggacaaa acagaggtcc
     1381 tagtaacagc tgaaaaatta tcttcaaagt tacagcacca tttcagcttg tcatctgttt
     1441 attcacatta ttttcctgac actggaattc cagaagtgac cacctgtcat tcccgaagtg
     1501 ccataactgt ggattatatt ttctattctg ctgaaaagga aggtgttgct gggcagccag
     1561 gagccgaagt tgctttggtt ggtggcttga aacttctagc tagactgtca cttcttacag
     1621 aacaagactt atggactgtt aatggacttc caaacgaaaa taactcttcg gatcatctgc
     1681 ctttattggc caaattcaga cttgagctct gacttctttt tttttttttt tttttttttt
     1741 ttcccggtac gcgggcctct cactgttgtg gcatctcccg ttgcagagca caggctccag
     1801 acgcgcaggc cagcggccat ggctcatggg cctagccgct tcacggcatg tgggctcttc
     1861 ccagggcacg aacccgtgtc ccctgcatcg gcaggtggac tctcaaccac tgcgccacca
     1921 gggaagcccc ttgctcttct ttgattacat atatactgtg ctttcccatt tatgttcttt
     1981 ttcaaagaat gtaaagttgt tcttaagagt ttgcatgtta cttattttta cgctatggaa
     2041 tttctgaaga ggttatgtta aatgcttgaa acaggtagca gaagaaacaa gtttacaaca
     2101 attttctttt tttgataatg aaaaaatatt ttcctgacaa gtgagatcta aacactcttt
     2161 attgtaaaag agttgtaaat atttattata aattccagta aaattgacag tgatttttaa
     2221 atatagtgca gtttctttag tcctcttagt aaagaatttc atgtttttgg caagctttac
     2281 agtggatcta aaatatcttt gagttcttac aaaccacaac tcatttccct tgcagaggcc
     2341 caatttcatc atgagaatca tatgtttgtt gagtcctaag tagttcatct cagaaatcat
     2401 cgggttcaca agtgtccagc caaccactgt agtttgtttt tgagggggct cagtaatgct
     2461 ttccaaaatt gtacagattg cttaatccat cttcttacta tcctgagcca tgtaatatgc
     2521 ctgcattgta ttggggaaat ataggtcacc ataactagta agatgaagtg ctttacacaa
     2581 gcccactttc catcctgtca tagaccattg caggaaccta ggagaggcag agattggggt
     2641 tatgccttgt gtttccctag taattttttt tttttttata ttcagtttca agaaaagatc
     2701 cctggattgg gaaagatatt ttattttact taactaatcc tgtagaaatt tattttatta
     2761 ggaaacttat atttggaaca aagtggcagc tataaggtta tttttatttt gccttagaaa
     2821 taagaggaag ccagcaaaac tctagagaga tatcaacttg gagacctaat gctcgtaagt
     2881 agtaacttta actgttttgt tttgttgtgg tttaactgtt ttgtttctaa aatgttttat
     2941 catgatgcag cagtgtgaga tgatgctgat tttttttata aagtggtgaa gagcaggcct
     3001 aaaatatcct gtagttggct ctgtataagt gtttgaatca aaaattttta aacataattg
     3061 aaaatttcct tttttagaca ttgggatcaa agaattatgt acatttttac taagtaattt
     3121 tatattgaat tatactgaat tatacaatgg gttttacagt gggttttttt ttacagtggg
     3181 ttttcttaat agaatacttc atcttaaatt agaaagcagc agctacttta tagtcttgga
     3241 ctttaaaagt ttttctacta aagtatttac tacaatttta aaaaaataaa ccagataaat
     3301 acccccaaaa ggcatgtggg ttacaaggat ttgcctagta aaaattatag cgataagcaa
     3361 gtacttttaa ctgtttaatg tctttcactc acagtattaa ctatagttct aggatttttc
     3421 atttcgtagt aagttttcag aaaattgtat gttctaatta gcagatattg tcatcatcga
     3481 ataataacag cacatagtat atttatcccc ttttagtatt ggggaaagaa aaatgaagat
     3541 tcattgatta cta
//
LOCUS       XM_032605299            3471 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus angel homolog 2 (ANGEL2), transcript
            variant X3, mRNA.
ACCESSION   XM_032605299
VERSION     XM_032605299.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3471
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3471
                     /gene="ANGEL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740083"
     CDS             62..1630
                     /gene="ANGEL2"
                     /codon_start=1
                     /product="protein angel homolog 2 isoform X3"
                     /protein_id="XP_032461190.1"
                     /db_xref="GeneID:116740083"
                     /translation="MLPHHQKSLGRDWTAPWENLQRCCWNRHISSCMRWPGHYSRAPY
                     PYFSSRHFSLNWRPPCLFESRTQFQYWNWRPDNLSQTSLIHLSSYIMNSEGDEPSSKR
                     RKHQGTIKRDWEYICNHNKEKTKILGDKNDDPICEDSENKFDFSVMSYNILSQDLLED
                     NSHLYKHCQRPVLHWSFRFPNILKEIKHYDADVLCLQEVQEDHYGTEIRPSLESLGYH
                     CEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEFYRRDVPLLDRDNVGLVLLLQPKIPS
                     AASPAICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGSFCPIVMCGDFNSVP
                     GSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRILSIPIWPPNLGISQNCVYEVQQV
                     PKVEKTDSDLTQTQLDKTEVLVTAEKLSSKLQHHFSLSSVYSHYFPDTGIPEVTTCHS
                     RSAITVDYIFYSAEKEGVAGQPGAEVALVGGLKLLARLSLLTEQDLWTVNGLPNENNS
                     SDHLPLLAKFRLEL"
     misc_feature    62..472
                     /gene="ANGEL2"
                     /note="Protein angel homolog 2 N-terminal; Region:
                     ANGEL2_N; pfam19339"
                     /db_xref="CDD:466047"
     misc_feature    500..1621
                     /gene="ANGEL2"
                     /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
                     superfamily; Region: EEP; cl00490"
                     /db_xref="CDD:469791"
     misc_feature    order(512..514,653..655,923..925,1046..1048,1052..1054,
                     1430..1432,1589..1594)
                     /gene="ANGEL2"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197306"
     misc_feature    order(653..655,1589..1591)
                     /gene="ANGEL2"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:197306"
     misc_feature    order(923..925,1052..1054,1592..1594)
                     /gene="ANGEL2"
                     /note="putative phosphate binding site [ion binding];
                     other site"
                     /db_xref="CDD:197306"
ORIGIN      
        1 agggcccggg ccgcggtacc gtcaggacgg acctccggag accccgaggg atagataccc
       61 catgttaccc catcaccaga agagtctcgg cagagactgg actgcaccgt gggagaatct
      121 gcaaaggtgt tgctggaaca gacatatttc tagttgtatg aggtggcctg gacattattc
      181 tcgtgctcct tacccatact tcagtagtag gcatttttca ctaaattgga gaccaccttg
      241 tttgtttgag tctagaactc agtttcagta ctggaactgg agacctgaca acctgagcca
      301 gacatctttg attcatctct ctagttacat catgaactct gagggtgatg agccttcatc
      361 aaaacgaaga aaacaccaag gcacaataaa acgggattgg gaatatatat gtaaccataa
      421 taaagaaaaa acgaagatcc taggagacaa aaatgatgac cccatatgtg aagacagtga
      481 gaacaagttt gacttttcag tgatgtccta taatatactt tctcaagatt tattggaaga
      541 caattctcac ctttataaac actgccagcg gccagtatta cactggagtt ttaggtttcc
      601 caatattctg aaagaaatta aacactatga tgcagatgta ctttgtttgc aagaagtgca
      661 agaagatcat tatggaacag agatcaggcc aagtttggaa tcattgggtt atcactgtga
      721 atacaagatg cggacaggaa ggaaacctga tggctgtgcc atttgcttca aacattccaa
      781 attttccctc ttatcagtga acccagtgga attctaccgc cgtgatgttc ctctattgga
      841 cagagacaat gttggattag tgttactctt gcagcccaaa atcccaagtg ctgcctcccc
      901 tgcgatctgt gtggctaaca cacatctgtt gtataatcca aggcgaggtg atattaaact
      961 gacccaactg gcaatgcttc tggcagagat ttccagtgtt gcccatcaga aagatggcag
     1021 cttctgcccc attgttatgt gtggtgactt taattctgtt cctggttctc cactgtatag
     1081 ttttataaag gaagggaaat tgaattatga aggacttgcc ataggaaagg tatctggcca
     1141 ggaacagtct tcacggggac aaagaatttt atctattcca atttggcccc caaacctagg
     1201 tatctcacag aactgtgtgt atgaggtaca gcaggtacca aaagtagaaa agacagacag
     1261 tgatctgaca caaacacagc tggacaaaac agaggtccta gtaacagctg aaaaattatc
     1321 ttcaaagtta cagcaccatt tcagcttgtc atctgtttat tcacattatt ttcctgacac
     1381 tggaattcca gaagtgacca cctgtcattc ccgaagtgcc ataactgtgg attatatttt
     1441 ctattctgct gaaaaggaag gtgttgctgg gcagccagga gccgaagttg ctttggttgg
     1501 tggcttgaaa cttctagcta gactgtcact tcttacagaa caagacttat ggactgttaa
     1561 tggacttcca aacgaaaata actcttcgga tcatctgcct ttattggcca aattcagact
     1621 tgagctctga cttctttttt tttttttttt tttttttttt cccggtacgc gggcctctca
     1681 ctgttgtggc atctcccgtt gcagagcaca ggctccagac gcgcaggcca gcggccatgg
     1741 ctcatgggcc tagccgcttc acggcatgtg ggctcttccc agggcacgaa cccgtgtccc
     1801 ctgcatcggc aggtggactc tcaaccactg cgccaccagg gaagcccctt gctcttcttt
     1861 gattacatat atactgtgct ttcccattta tgttcttttt caaagaatgt aaagttgttc
     1921 ttaagagttt gcatgttact tatttttacg ctatggaatt tctgaagagg ttatgttaaa
     1981 tgcttgaaac aggtagcaga agaaacaagt ttacaacaat tttctttttt tgataatgaa
     2041 aaaatatttt cctgacaagt gagatctaaa cactctttat tgtaaaagag ttgtaaatat
     2101 ttattataaa ttccagtaaa attgacagtg atttttaaat atagtgcagt ttctttagtc
     2161 ctcttagtaa agaatttcat gtttttggca agctttacag tggatctaaa atatctttga
     2221 gttcttacaa accacaactc atttcccttg cagaggccca atttcatcat gagaatcata
     2281 tgtttgttga gtcctaagta gttcatctca gaaatcatcg ggttcacaag tgtccagcca
     2341 accactgtag tttgtttttg agggggctca gtaatgcttt ccaaaattgt acagattgct
     2401 taatccatct tcttactatc ctgagccatg taatatgcct gcattgtatt ggggaaatat
     2461 aggtcaccat aactagtaag atgaagtgct ttacacaagc ccactttcca tcctgtcata
     2521 gaccattgca ggaacctagg agaggcagag attggggtta tgccttgtgt ttccctagta
     2581 attttttttt tttttatatt cagtttcaag aaaagatccc tggattggga aagatatttt
     2641 attttactta actaatcctg tagaaattta ttttattagg aaacttatat ttggaacaaa
     2701 gtggcagcta taaggttatt tttattttgc cttagaaata agaggaagcc agcaaaactc
     2761 tagagagata tcaacttgga gacctaatgc tcgtaagtag taactttaac tgttttgttt
     2821 tgttgtggtt taactgtttt gtttctaaaa tgttttatca tgatgcagca gtgtgagatg
     2881 atgctgattt tttttataaa gtggtgaaga gcaggcctaa aatatcctgt agttggctct
     2941 gtataagtgt ttgaatcaaa aatttttaaa cataattgaa aatttccttt tttagacatt
     3001 gggatcaaag aattatgtac atttttacta agtaatttta tattgaatta tactgaatta
     3061 tacaatgggt tttacagtgg gttttttttt acagtgggtt ttcttaatag aatacttcat
     3121 cttaaattag aaagcagcag ctactttata gtcttggact ttaaaagttt ttctactaaa
     3181 gtatttacta caattttaaa aaaataaacc agataaatac ccccaaaagg catgtgggtt
     3241 acaaggattt gcctagtaaa aattatagcg ataagcaagt acttttaact gtttaatgtc
     3301 tttcactcac agtattaact atagttctag gatttttcat ttcgtagtaa gttttcagaa
     3361 aattgtatgt tctaattagc agatattgtc atcatcgaat aataacagca catagtatat
     3421 ttatcccctt ttagtattgg ggaaagaaaa atgaagattc attgattact a
//
LOCUS       XM_032605310            3317 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus angel homolog 2 (ANGEL2), transcript
            variant X4, mRNA.
ACCESSION   XM_032605310
VERSION     XM_032605310.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3317
                     /gene="ANGEL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740083"
     CDS             349..1476
                     /gene="ANGEL2"
                     /codon_start=1
                     /product="protein angel homolog 2 isoform X4"
                     /protein_id="XP_032461201.1"
                     /db_xref="GeneID:116740083"
                     /translation="MSYNILSQDLLEDNSHLYKHCQRPVLHWSFRFPNILKEIKHYDA
                     DVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPV
                     EFYRRDVPLLDRDNVGLVLLLQPKIPSAASPAICVANTHLLYNPRRGDIKLTQLAMLL
                     AEISSVAHQKDGSFCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSR
                     GQRILSIPIWPPNLGISQNCVYEVQQVPKVEKTDSDLTQTQLDKTEVLVTAEKLSSKL
                     QHHFSLSSVYSHYFPDTGIPEVTTCHSRSAITVDYIFYSAEKEGVAGQPGAEVALVGG
                     LKLLARLSLLTEQDLWTVNGLPNENNSSDHLPLLAKFRLEL"
     misc_feature    349..1467
                     /gene="ANGEL2"
                     /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
                     superfamily; Region: EEP; cl00490"
                     /db_xref="CDD:469791"
     misc_feature    order(358..360,499..501,769..771,892..894,898..900,
                     1276..1278,1435..1440)
                     /gene="ANGEL2"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197306"
     misc_feature    order(499..501,1435..1437)
                     /gene="ANGEL2"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:197306"
     misc_feature    order(769..771,898..900,1438..1440)
                     /gene="ANGEL2"
                     /note="putative phosphate binding site [ion binding];
                     other site"
                     /db_xref="CDD:197306"
ORIGIN      
        1 gggacttggc ggcgggcaac actgaacctc ccagcatgct ttgcagcctg gcggagaggc
       61 ccgacgccta gtgatgggga gccctcggtg ctctacgccg ccaaatcggc tgtagcggtt
      121 gaggttgagc ccggggcctg ggaattggac gctcgcagag ggggaaaatg gaagcgtggc
      181 gctgtgtgag gagaggctac ggccgctgtg tggtggggag aggcaggcac aataaaacgg
      241 gattgggaat atatatgtaa ccataataaa gaaaaaacga agatcctagg agacaaaaat
      301 gatgacccca tatgtgaaga cagtgagaac aagtttgact tttcagtgat gtcctataat
      361 atactttctc aagatttatt ggaagacaat tctcaccttt ataaacactg ccagcggcca
      421 gtattacact ggagttttag gtttcccaat attctgaaag aaattaaaca ctatgatgca
      481 gatgtacttt gtttgcaaga agtgcaagaa gatcattatg gaacagagat caggccaagt
      541 ttggaatcat tgggttatca ctgtgaatac aagatgcgga caggaaggaa acctgatggc
      601 tgtgccattt gcttcaaaca ttccaaattt tccctcttat cagtgaaccc agtggaattc
      661 taccgccgtg atgttcctct attggacaga gacaatgttg gattagtgtt actcttgcag
      721 cccaaaatcc caagtgctgc ctcccctgcg atctgtgtgg ctaacacaca tctgttgtat
      781 aatccaaggc gaggtgatat taaactgacc caactggcaa tgcttctggc agagatttcc
      841 agtgttgccc atcagaaaga tggcagcttc tgccccattg ttatgtgtgg tgactttaat
      901 tctgttcctg gttctccact gtatagtttt ataaaggaag ggaaattgaa ttatgaagga
      961 cttgccatag gaaaggtatc tggccaggaa cagtcttcac ggggacaaag aattttatct
     1021 attccaattt ggcccccaaa cctaggtatc tcacagaact gtgtgtatga ggtacagcag
     1081 gtaccaaaag tagaaaagac agacagtgat ctgacacaaa cacagctgga caaaacagag
     1141 gtcctagtaa cagctgaaaa attatcttca aagttacagc accatttcag cttgtcatct
     1201 gtttattcac attattttcc tgacactgga attccagaag tgaccacctg tcattcccga
     1261 agtgccataa ctgtggatta tattttctat tctgctgaaa aggaaggtgt tgctgggcag
     1321 ccaggagccg aagttgcttt ggttggtggc ttgaaacttc tagctagact gtcacttctt
     1381 acagaacaag acttatggac tgttaatgga cttccaaacg aaaataactc ttcggatcat
     1441 ctgcctttat tggccaaatt cagacttgag ctctgacttc tttttttttt tttttttttt
     1501 ttttttcccg gtacgcgggc ctctcactgt tgtggcatct cccgttgcag agcacaggct
     1561 ccagacgcgc aggccagcgg ccatggctca tgggcctagc cgcttcacgg catgtgggct
     1621 cttcccaggg cacgaacccg tgtcccctgc atcggcaggt ggactctcaa ccactgcgcc
     1681 accagggaag ccccttgctc ttctttgatt acatatatac tgtgctttcc catttatgtt
     1741 ctttttcaaa gaatgtaaag ttgttcttaa gagtttgcat gttacttatt tttacgctat
     1801 ggaatttctg aagaggttat gttaaatgct tgaaacaggt agcagaagaa acaagtttac
     1861 aacaattttc tttttttgat aatgaaaaaa tattttcctg acaagtgaga tctaaacact
     1921 ctttattgta aaagagttgt aaatatttat tataaattcc agtaaaattg acagtgattt
     1981 ttaaatatag tgcagtttct ttagtcctct tagtaaagaa tttcatgttt ttggcaagct
     2041 ttacagtgga tctaaaatat ctttgagttc ttacaaacca caactcattt cccttgcaga
     2101 ggcccaattt catcatgaga atcatatgtt tgttgagtcc taagtagttc atctcagaaa
     2161 tcatcgggtt cacaagtgtc cagccaacca ctgtagtttg tttttgaggg ggctcagtaa
     2221 tgctttccaa aattgtacag attgcttaat ccatcttctt actatcctga gccatgtaat
     2281 atgcctgcat tgtattgggg aaatataggt caccataact agtaagatga agtgctttac
     2341 acaagcccac tttccatcct gtcatagacc attgcaggaa cctaggagag gcagagattg
     2401 gggttatgcc ttgtgtttcc ctagtaattt tttttttttt tatattcagt ttcaagaaaa
     2461 gatccctgga ttgggaaaga tattttattt tacttaacta atcctgtaga aatttatttt
     2521 attaggaaac ttatatttgg aacaaagtgg cagctataag gttattttta ttttgcctta
     2581 gaaataagag gaagccagca aaactctaga gagatatcaa cttggagacc taatgctcgt
     2641 aagtagtaac tttaactgtt ttgttttgtt gtggtttaac tgttttgttt ctaaaatgtt
     2701 ttatcatgat gcagcagtgt gagatgatgc tgattttttt tataaagtgg tgaagagcag
     2761 gcctaaaata tcctgtagtt ggctctgtat aagtgtttga atcaaaaatt tttaaacata
     2821 attgaaaatt tcctttttta gacattggga tcaaagaatt atgtacattt ttactaagta
     2881 attttatatt gaattatact gaattataca atgggtttta cagtgggttt ttttttacag
     2941 tgggttttct taatagaata cttcatctta aattagaaag cagcagctac tttatagtct
     3001 tggactttaa aagtttttct actaaagtat ttactacaat tttaaaaaaa taaaccagat
     3061 aaataccccc aaaaggcatg tgggttacaa ggatttgcct agtaaaaatt atagcgataa
     3121 gcaagtactt ttaactgttt aatgtctttc actcacagta ttaactatag ttctaggatt
     3181 tttcatttcg tagtaagttt tcagaaaatt gtatgttcta attagcagat attgtcatca
     3241 tcgaataata acagcacata gtatatttat ccccttttag tattggggaa agaaaaatga
     3301 agattcattg attacta
//
LOCUS       XM_032605323            1542 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CUGBP Elav-like family member 3 (CELF3),
            transcript variant X1, mRNA.
ACCESSION   XM_032605323
VERSION     XM_032605323.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1542
                     /gene="CELF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 Proteins, and 70% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740096"
     CDS             1..1395
                     /gene="CELF3"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 3 isoform X1"
                     /protein_id="XP_032461214.1"
                     /db_xref="GeneID:116740096"
                     /translation="MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYT
                     GLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGML
                     GKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT
                     LPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAAL
                     VAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAA
                     LGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPA
                     AYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTD
                     SEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL
                     KVQLKRPKDANRPY"
     misc_feature    4..264
                     /gene="CELF3"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and
                     similar proteins; Region: RRM1_CELF3_4_5_6; cd12632"
                     /db_xref="CDD:410041"
     misc_feature    order(22..24,28..30,34..39,46..48,103..105,109..111,
                     115..117,142..150,154..156,244..246,250..252)
                     /gene="CELF3"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:410041"
     misc_feature    280..522
                     /gene="CELF3"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and
                     similar proteins; Region: RRM2_CELF3_4_5_6; cd12635"
                     /db_xref="CDD:410043"
     misc_feature    order(286..288,292..294,298..303,310..312,367..369,
                     373..375,379..381,403..411,415..417,505..507,511..513)
                     /gene="CELF3"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:410043"
     misc_feature    <640..>1053
                     /gene="CELF3"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    1123..1359
                     /gene="CELF3"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and
                     similar proteins; Region: RRM3_CELF3_4_5_6; cd12639"
                     /db_xref="CDD:241083"
ORIGIN      
        1 atgaaggaac cggatgccat caagctgttt gtggggcaga taccgaggca tctggaggaa
       61 aaggacctga aacccatctt cgaacagttt ggtcggatct tcgagctgac tgtcatcaag
      121 gacaagtaca ccgggctgca caagggatgt gccttcctga catactgtgc ccgcgattca
      181 gccctgaagg cccagagcgc cctgcacgaa cagaagacgc ttccagggat gaacaggccg
      241 atccaggtca agccagccga cagcgagagc cgaggagaag accggaagct ctttgtgggg
      301 atgctaggga agcagcagac agatgaggac gtccggaaga tgttcgagcc tttcgggacc
      361 atagacgagt gcactgtgct ccggggccca gacggcacca gcaaaggctg cgccttcgtg
      421 aagttccaga ctcacgccga ggcccaggca gccatcaaca cccttcacag cagccggacc
      481 ctgccgggtg cctcgtccag cctggtggtg aagtttgctg acacggagaa ggagcgaggt
      541 ctccgccgaa tgcagcaggt ggccacccag ctgggcatgt tcagccccat cgccctccag
      601 ttcggagcct acagcgccta cacccaggcc ctgatgcagc agcaggcggc cctggtagcg
      661 gctcacagtg cctacctcag ccccatggcc accatggctg ccgtgcagat gcagcacatg
      721 gccgccatca atgccaatgg cctcatcgcc acccccatca ccccatcctc aggaaccagc
      781 acccctcctg ccatcgctgc cacgcccgtc tctgcaatcc ctgctgccct gggcgtcaac
      841 ggctacagcc cggtgcccac ccagcccact gggcagcctg cccctgatgc tctgtatccc
      901 aacggggttc acccctaccc agcccagagc cccgcggccc ccgtggaccc cctgcagcag
      961 gcctacgcgg ggatgcagca ctatacagca gcctacccgg cagcctacag cctggtggcg
     1021 cccgcgttcc cacagcctcc tgccctggtg gcccagcagc ctccgcctcc cccccagcag
     1081 cagcagcagc agcagcagca gcagcagcag cagcaacggg aaggccctga tggctgcaac
     1141 atcttcatct accacctgcc ccaggagttc actgactcag agatcctcca gatgtttgtc
     1201 ccgtttggcc acgtcatctc agccaaagtc tttgttgacc gggccaccaa tcagagcaag
     1261 tgttttggct ttgtgagttt cgacaatccg gccagtgccc aggctgccat ccaggccatg
     1321 aacggtttcc agattggcat gaagcgcctc aaagtccagc taaagcggcc taaggatgcc
     1381 aaccggccct actgagggcc gcaggcctgg agacaccaga ggaaggggcg cctcaccccc
     1441 tcgccccacg actggcccca gccctctctg cacatccgcc ctgggccttg attgggctct
     1501 ggggcaaacg ctgcttcatg gccctggggg cacaggacac cg
//
LOCUS       XM_032605331            2730 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CUGBP Elav-like family member 3 (CELF3),
            transcript variant X2, mRNA.
ACCESSION   XM_032605331
VERSION     XM_032605331.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2730
                     /gene="CELF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 11 Proteins, and 58%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740096"
     CDS             313..1704
                     /gene="CELF3"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 3 isoform X2"
                     /protein_id="XP_032461222.1"
                     /db_xref="GeneID:116740096"
                     /translation="MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYT
                     GLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGML
                     GKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT
                     LPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAAL
                     VAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAA
                     LGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAYPAA
                     YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDS
                     EILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
                     VQLKRPKDANRPY"
     misc_feature    316..576
                     /gene="CELF3"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and
                     similar proteins; Region: RRM1_CELF3_4_5_6; cd12632"
                     /db_xref="CDD:410041"
     misc_feature    order(334..336,340..342,346..351,358..360,415..417,
                     421..423,427..429,454..462,466..468,556..558,562..564)
                     /gene="CELF3"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:410041"
     misc_feature    592..834
                     /gene="CELF3"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and
                     similar proteins; Region: RRM2_CELF3_4_5_6; cd12635"
                     /db_xref="CDD:410043"
     misc_feature    order(598..600,604..606,610..615,622..624,679..681,
                     685..687,691..693,715..723,727..729,817..819,823..825)
                     /gene="CELF3"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:410043"
     misc_feature    <952..>1362
                     /gene="CELF3"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    1432..1668
                     /gene="CELF3"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and
                     similar proteins; Region: RRM3_CELF3_4_5_6; cd12639"
                     /db_xref="CDD:241083"
ORIGIN      
        1 cctgctacca ccctaaccct ccaggtcttg gccacactgc cccccatcct gggatatctg
       61 ccagatctct gggagggaga tcgtttgctt gggctatgcc ccatggtggc atgacagtgc
      121 ctgcctagac ccctgacccc gagccctcaa ctccctgggc ctcctttgtg tgaagagcgg
      181 cccctctgct cagcactgtg gttgaggcca aagggaaagc cagccccggc cacttgactc
      241 cttgctgggc agctccccct ggccttcggg cctctccctg ctcccctcgg ccccttctcc
      301 tgggccgccc caatgaagga accggatgcc atcaagctgt ttgtggggca gataccgagg
      361 catctggagg aaaaggacct gaaacccatc ttcgaacagt ttggtcggat cttcgagctg
      421 actgtcatca aggacaagta caccgggctg cacaagggat gtgccttcct gacatactgt
      481 gcccgcgatt cagccctgaa ggcccagagc gccctgcacg aacagaagac gcttccaggg
      541 atgaacaggc cgatccaggt caagccagcc gacagcgaga gccgaggaga agaccggaag
      601 ctctttgtgg ggatgctagg gaagcagcag acagatgagg acgtccggaa gatgttcgag
      661 cctttcggga ccatagacga gtgcactgtg ctccggggcc cagacggcac cagcaaaggc
      721 tgcgccttcg tgaagttcca gactcacgcc gaggcccagg cagccatcaa cacccttcac
      781 agcagccgga ccctgccggg tgcctcgtcc agcctggtgg tgaagtttgc tgacacggag
      841 aaggagcgag gtctccgccg aatgcagcag gtggccaccc agctgggcat gttcagcccc
      901 atcgccctcc agttcggagc ctacagcgcc tacacccagg ccctgatgca gcagcaggcg
      961 gccctggtag cggctcacag tgcctacctc agccccatgg ccaccatggc tgccgtgcag
     1021 atgcagcaca tggccgccat caatgccaat ggcctcatcg ccacccccat caccccatcc
     1081 tcaggaacca gcacccctcc tgccatcgct gccacgcccg tctctgcaat ccctgctgcc
     1141 ctgggcgtca acggctacag cccggtgccc acccagccca ctgggcagcc tgcccctgat
     1201 gctctgtatc ccaacggggt tcacccctac ccagcccaga gccccgcggc ccccgtggac
     1261 cccctgcagc aggcctacgc ggggatgcag cactatacag cctacccggc agcctacagc
     1321 ctggtggcgc ccgcgttccc acagcctcct gccctggtgg cccagcagcc tccgcctccc
     1381 ccccagcagc agcagcagca gcagcagcag cagcagcagc agcaacggga aggccctgat
     1441 ggctgcaaca tcttcatcta ccacctgccc caggagttca ctgactcaga gatcctccag
     1501 atgtttgtcc cgtttggcca cgtcatctca gccaaagtct ttgttgaccg ggccaccaat
     1561 cagagcaagt gttttggctt tgtgagtttc gacaatccgg ccagtgccca ggctgccatc
     1621 caggccatga acggtttcca gattggcatg aagcgcctca aagtccagct aaagcggcct
     1681 aaggatgcca accggcccta ctgagggccg caggcctgga gacaccagag gaaggggcgc
     1741 ctcaccccct cgccccacga ctggccccag ccctctctgc acatccgccc tgggccttga
     1801 ttgggctctg gggcaaacgc tgcttcatgg ccctgggggc acaggacacc ggcccactcc
     1861 caccaccccg cctccccgaa gggcctgttt cctcccaggt gcccttttgg cctttgtgag
     1921 ggagcaagga acaggctcga aggctctggg gtatctgcct tctgctgggg ctcctgtgac
     1981 gggccttctg cgcccagcct tcgcacttgc ctcccccagc agcgggcctc ttctacctgt
     2041 gcggcccggg agggcagcag gggcctccca catgctccct gcccaccctc gccccagcct
     2101 cgcccccata ttcggggttt ctcagaagct ggttgtcaca ctccctgtgg ccaccctcag
     2161 ctcgaggtag gatatccctg aaccctgggc tcccagccct aaaactcact gcctccccca
     2221 agggccccct ccaaggagaa cgtggaggag ccctgagggc tgcctctccg ccagtcagcc
     2281 acagagaccc tcctcctttc acgaggaaaa gacctccccc aaacccctaa aaatgtttac
     2341 agtctctgct ggcccctccg tgtaaatagc actaccaccc gtgcgttatc cagcccggcc
     2401 cagcccggac gctgccattt ctctttctgg gggtttagac aatgtttccc ttggattttc
     2461 tctctctctt gagttctccc tttgctttgg ggggtaattg ggtatttggg aggaggggtg
     2521 tggggcgggc taaaggggtt tattacctga tcattttctc tagaaagagg ttttagggaa
     2581 gagaaatggg gtgggggtgg gagtggtccg gggagagtgg ggagtccgtt tcagacactt
     2641 ctctatgctt aacttattta tttattgcat tttactttta aagagttggt cttttctgtc
     2701 taaataaaga aaaagtttaa aagcatcaaa
//
LOCUS       XM_032605344             590 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulatory subunit of type II PKA
            R-subunit domain containing 1 (RIIAD1), transcript variant X1,
            mRNA.
ACCESSION   XM_032605344
VERSION     XM_032605344.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..590
                     /gene="RIIAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740105"
     CDS             146..424
                     /gene="RIIAD1"
                     /codon_start=1
                     /product="RIIa domain-containing protein 1"
                     /protein_id="XP_032461235.1"
                     /db_xref="GeneID:116740105"
                     /translation="MATLPGGIQGLYPEALSPEQLEKLRGFKIQTRITNEKYLRTHKE
                     VELLISGFFREMFLKRPDNIQEFAADYFTDPRLPNKIHMQLIKEKKAA"
     misc_feature    263..385
                     /gene="RIIAD1"
                     /note="dimerization/docking (D/D) domain found in RIIa
                     domain-containing protein 1 (RIIAD1) and similar proteins;
                     Region: DD_RIIAD1; cd22971"
                     /db_xref="CDD:438540"
     misc_feature    order(266..268,278..283,290..295,302..307,314..319)
                     /gene="RIIAD1"
                     /note="putative AKAP interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438540"
     misc_feature    order(278..280,287..292,299..304,311..316,323..328,
                     332..343,347..352,359..361,365..367)
                     /gene="RIIAD1"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:438540"
ORIGIN      
        1 ctctgctctt tgcaagggtt atatctactc tgctcatcgc tgttttcctt ctctcttgcc
       61 ccgccccctt ctggagaggg cggggccagg ccgggggtgg gtcctcacca gccccgcctc
      121 ccgtcgcctt gacgaccgcg acaagatggc gaccctgccg ggcgggattc aagggctgta
      181 ccccgaggcg ctgagtcccg agcagctgga gaagctgcgc ggcttcaaga ttcagactcg
      241 gattactaat gaaaagtacc taaggaccca caaagaagtg gagttgctca taagtggttt
      301 cttcagagaa atgtttttga aaagaccaga caacattcaa gaatttgctg cagactattt
      361 cacggatcca agacttccca acaagattca catgcagcta attaaggaga agaaagcggc
      421 ttaatgagca aaatcctgat gctcagctgt tgagagagaa cagaaagcat ccagcctcgg
      481 gggtcatctg gaagcgagag agccctgttg ccatcagtgt gggtttccgg gctgtgtttg
      541 ctgttgcaaa ggcttttaaa gatgctcatt aaaaacagac ctccctgttc
//
LOCUS       XM_032605353             644 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulatory subunit of type II PKA
            R-subunit domain containing 1 (RIIAD1), transcript variant X2,
            mRNA.
ACCESSION   XM_032605353
VERSION     XM_032605353.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..644
                     /gene="RIIAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740105"
     CDS             200..478
                     /gene="RIIAD1"
                     /codon_start=1
                     /product="RIIa domain-containing protein 1"
                     /protein_id="XP_032461244.1"
                     /db_xref="GeneID:116740105"
                     /translation="MATLPGGIQGLYPEALSPEQLEKLRGFKIQTRITNEKYLRTHKE
                     VELLISGFFREMFLKRPDNIQEFAADYFTDPRLPNKIHMQLIKEKKAA"
     misc_feature    317..439
                     /gene="RIIAD1"
                     /note="dimerization/docking (D/D) domain found in RIIa
                     domain-containing protein 1 (RIIAD1) and similar proteins;
                     Region: DD_RIIAD1; cd22971"
                     /db_xref="CDD:438540"
     misc_feature    order(320..322,332..337,344..349,356..361,368..373)
                     /gene="RIIAD1"
                     /note="putative AKAP interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438540"
     misc_feature    order(332..334,341..346,353..358,365..370,377..382,
                     386..397,401..406,413..415,419..421)
                     /gene="RIIAD1"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:438540"
ORIGIN      
        1 gcaagggtta tatctactct gctcatcgct gttttccttc tctcttggtg agaagacatg
       61 cgtgcatctt cagcaaggag gcggggtgct accaggaggt aggggcttcc cgccccgccc
      121 ccttctggag agggcggggc caggccgggg gtgggtcctc accagccccg cctcccgtcg
      181 ccttgacgac cgcgacaaga tggcgaccct gccgggcggg attcaagggc tgtaccccga
      241 ggcgctgagt cccgagcagc tggagaagct gcgcggcttc aagattcaga ctcggattac
      301 taatgaaaag tacctaagga cccacaaaga agtggagttg ctcataagtg gtttcttcag
      361 agaaatgttt ttgaaaagac cagacaacat tcaagaattt gctgcagact atttcacgga
      421 tccaagactt cccaacaaga ttcacatgca gctaattaag gagaagaaag cggcttaatg
      481 agcaaaatcc tgatgctcag ctgttgagag agaacagaaa gcatccagcc tcgggggtca
      541 tctggaagcg agagagccct gttgccatca gtgtgggttt ccgggctgtg tttgctgttg
      601 caaaggcttt taaagatgct cattaaaaac agacctccct gttc
//
LOCUS       XM_032605365            1428 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus actin like 8 (ACTL8), mRNA.
ACCESSION   XM_032605365
VERSION     XM_032605365.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1428
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1428
                     /gene="ACTL8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 70% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740114"
     CDS             1..1098
                     /gene="ACTL8"
                     /codon_start=1
                     /product="actin-like protein 8"
                     /protein_id="XP_032461256.1"
                     /db_xref="GeneID:116740114"
                     /translation="MATRTIVIDHGSGFLKAGFSGFNEPQMVFPSIVNYIPCRENPGP
                     SYARRRVSLGIDLCRPDTFSYPIHRGRVLNWEGVEHIWSFVLEKHRLENENSPVMVTE
                     FPLKEPADRQKTLEIMFELLDVPSIFLADQLEMSLYASGLLTGVVVDSGYGLTRVQPF
                     HLGCPLRSSAKMLEFAGQDLSAYLFKSLFKEDYNRHNLFQLDTVATTQMTKCYVPQNL
                     GESLDFYQSLPGGSDENNAYQLPDGSRVELTPMQRLAPEMFFSPEVFDLQGPSISQAV
                     LDSIETCEASMHPLLVSHLMACGGNTLYPGFTKRLYGLIADHFSSTKTTMWVGSNRNF
                     SVWLGASVVAHLSTYKSKWMTKEEYDESFKM"
     misc_feature    7..1086
                     /gene="ACTL8"
                     /note="Actin; Region: ACTIN; smart00268"
                     /db_xref="CDD:214592"
ORIGIN      
        1 atggctacaa gaaccatcgt cattgaccac ggctctggct ttctgaaggc tggcttttcg
       61 gggttcaatg agccccagat ggtcttcccg agcatcgtga actacatccc ttgcagggag
      121 aaccccggcc ccagctacgc ccggcggcgc gtaagcctag gcatcgatct ttgccgtccc
      181 gacaccttta gctaccccat ccaccggggc cgtgtcctca actgggaggg tgtggagcac
      241 atctggtcat ttgtcctaga gaaacacagg ctggagaatg agaactcccc tgtgatggtc
      301 acagagttcc ccctgaagga gcctgcggac cggcagaaga ccctggagat tatgtttgag
      361 ttactggatg tcccgtccat cttcctggct gaccagctgg agatgtccct gtatgcctct
      421 ggcctcctga ccggcgtggt ggtagattca ggctacggcc tgacccgcgt gcagcctttc
      481 catctgggct gccccttacg gtccagtgct aagatgctgg agtttgcagg ccaggatctg
      541 tcggcctatc tcttcaagag cctttttaag gaagattaca atcgacacaa cctgtttcag
      601 ctggatacgg tggccaccac tcagatgacc aagtgctacg tgccgcagaa tctgggggag
      661 tcactggact tttatcagag cctgccggga ggctccgatg agaataatgc ctatcagctc
      721 ccggatggca gccgtgtgga gctgaccccc atgcagcggc tggctcctga gatgttcttc
      781 agccctgagg tgttcgacct gcaagggccc agcatctccc aggccgtcct ggattccatc
      841 gagacctgcg aggcctccat gcacccgctg ctcgtctccc acctgatggc ctgtgggggc
      901 aacaccctct atcctggctt caccaagcgt ctgtatgggc tgatcgctga tcatttctcc
      961 tccaccaaga ccaccatgtg ggtgggttcc aacaggaact ttagtgtctg gctaggagcg
     1021 tctgtagtgg ctcatctgtc gacttacaag tctaagtgga tgaccaaaga ggagtatgat
     1081 gagagtttca agatgtgatg ggctggcttg cccctggaac ccagctccca tcagatgggc
     1141 atgggtggat tcatttcagc aaaaggggct gggccggggt tagctggctt tggaattcaa
     1201 aggtcttgag ggattttttt taggttctag ggttttatct tgtttcagga gtgggatcca
     1261 acccatggga ggacagggtg tcatccctgg aagccttcca ggggggtggt ctgtcactgg
     1321 gatgggagcg gccagctgcc atctccatgc ttaatagcta cttatttgtc ctggcatctc
     1381 ccttgggttg tcccattctt ttggttgagt aggttttaac tggggcaa
//
LOCUS       XM_032605375            4772 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class K (PIGK), mRNA.
ACCESSION   XM_032605375
VERSION     XM_032605375.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4772
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4772
                     /gene="PIGK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740121"
     CDS             24..1211
                     /gene="PIGK"
                     /codon_start=1
                     /product="GPI-anchor transamidase"
                     /protein_id="XP_032461266.1"
                     /db_xref="GeneID:116740121"
                     /translation="MADTCFLGQGFSTLVGLLLLPFGSLAASQIEDQAEQFFRSGHTN
                     NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATV
                     FSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLLSDDRSNILIY
                     MTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP
                     NIMALASSQVGEDSLSHQPDPAIGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCP
                     KSLCVSTPGHRTDLFQRDPKNVLITDFFGSVRKVEITTETISLQPDSGIMESSYKKDL
                     MDEELMEPLKYAEQLPVAQIIHQKPKLKDWHPPGGFILGLWALIIMVFFKTYGIKHMK
                     FIF"
     misc_feature    156..842
                     /gene="PIGK"
                     /note="Caspase, interleukin-1 beta converting enzyme (ICE)
                     homologues; Cysteine-dependent aspartate-directed
                     proteases that mediate programmed cell death (apoptosis).
                     Caspases are synthesized as inactive zymogens and
                     activated by proteolysis of the peptide...; Region: CASc;
                     cl00042"
                     /db_xref="CDD:444667"
ORIGIN      
        1 gcgcgagtct gaagccggca aacatggccg acacctgttt tctcggccag ggtttctcta
       61 ccctggtagg gttattgctc ttgcccttcg gcagcttggc cgctagtcag atcgaggatc
      121 aagcggaaca gttctttaga agtggccata cgaacaactg ggcggttttg gtatgtacat
      181 cccgattctg gtttaattat cgacatgttg caaatactct ttctgtttat agaagtgtca
      241 agaggctagg tattcctgac agtcacattg ttctgatgct tgcagatgat atggcatgca
      301 accctagaaa tcctaaacca gctacagtgt ttagtcacaa gaatatggaa ttaaatgtat
      361 atggagatga tgtggaagtg gattatagaa gttatgaggt aactgtggaa aattttttac
      421 gggtattaac tgggaggatt ccatctagta cgcctcggtc aaaacgtctt ctttctgatg
      481 ataggagtaa tattcttatt tatatgacag gacatggtgg aaacggtttc ttgaaatttc
      541 aagattctga agaaattacc aacatagaac ttgcagatgc ttttgaacaa atgtggcaaa
      601 aaagacgcta caatgagcta ttgtttatta ttgatacttg tcaaggagca tccatgtatg
      661 agagatttta ttctcctaac ataatggctt tagctagtag ccaagtggga gaagattcac
      721 tctcgcatca acctgatcct gcaattggag tccatcttat ggatagatac acattttatg
      781 tcttagaatt tttggaggaa attaatccag ctagccagac taatatgaat gatctttttc
      841 aggtatgccc caaaagtcta tgtgtgtcta ctcctggaca tcgcactgat ctttttcaga
      901 gggatcctaa aaatgtactg ataactgatt tctttggaag tgtacggaaa gtggaaatta
      961 caacagagac tattagtttg cagccagatt caggaatcat ggaaagcagc tataagaaag
     1021 acctgatgga tgaggaacta atggaacctc tgaaatatgc tgaacaactt cctgtagctc
     1081 agataataca ccagaaacca aagctgaaag attggcatcc tcctgggggt tttattctgg
     1141 gattgtgggc actcattatc atggttttct tcaaaactta tggaatcaag catatgaagt
     1201 tcattttcta gatgcgatga tgtatgaaga acactacatg gaagactaca atcttggata
     1261 aaagttcatg tctatatata tatatatata ttttttttaa tatctttatt ggagtaaaat
     1321 tgctttacaa tggtgtgtta gtttctgctt tataacaaag tggatcagtt atacatatac
     1381 ttatgttccc atatatcttc cctcttgcgt ctccctccca ccctccctat cccacccctc
     1441 caggcggtca caaagcaccg agctgatatc cctgtgctat gcggcatgtc aatatatttt
     1501 ttaaaatgca ttgctcttgt gtgatttggc agaaagtata aggaagctaa atttgaaaga
     1561 actattggtt ttataactca gaaataattg ttaatgcaag tgctaaatga cactaaatat
     1621 atttgttttt cattttgtat tattagaata ttgggacaaa gagatcagaa tacactcact
     1681 gactcttttt gaaaataaga atttcccctt gttttatccc cttttcattt ggaaaagaaa
     1741 aaaaatgtga agacattaaa ttctcactag caagggaaac ttttgttagt atttttgtat
     1801 atgttctccc agtctttttc atactttttt tctaaaatag agagcatata gaacatacca
     1861 ttttgtaacc ttacttgtca ttttgcagta tgttgtcaac cccttccctc tccttgcata
     1921 ttcttcaaga acacgtgaat ggctgcacac tatccatttc atgaatgtac agtaagttat
     1981 ttagcattct gctataatta gaccacttac tttgttcccc aaattttctt ttggttcatt
     2041 ctttaatgtg ttaatatttt gtcagctatt cttggaattc tgcagctaaa atgataagta
     2101 gatatgaata atcagtttct taatctgtgg tactgacagt ctccaggacc ttatttactg
     2161 tcagtttatc tggaaaattt aagatcttgg ggaatttcac atactgattg ctcaagagaa
     2221 acaaacctaa tcatttttca tttctaagca ttctgtgctc ctctagaatt gatcacctct
     2281 tcttctgttt ccacgctgaa agagatgttg tttcattctg tttaaggtaa accttgccca
     2341 ctggctggat ctacactttt tctgggacaa tcccgtaaaa cggatgggct gtaggaaaaa
     2401 ttcatacttg tggcccttcc ttcgtgtctg actgatgtat cacataaggc agtaagctct
     2461 tttctggtct ctgacaagat gcaagagctt atatccccat cactgatttt tttcatcttg
     2521 ccagccatct tcatatctat ctcgtaactg taaatggtat tgagattgtg ctttgctatc
     2581 agccccagat attgcttttt cacacataag cggtaaaaaa aagtgaaagt tgagtattca
     2641 tgtcccatgg gatacttttt tgtattttat ctgttttatc caggaacttc gtgctaatct
     2701 ttattcacta tgaagatatg ttttgtaaat tgtaggaaac attcagaaga caaccgttcc
     2761 tctacaataa aacctcttaa aattaatagt ccttagactc tgttttcctt ttagcactta
     2821 aaatattacc ctttaattat atgcaaaatg gtcatgcttt tcacaggcaa aggattaact
     2881 gtgttatctc tcagatcaga acaaatgaca ttgaggcttt ttgccagctc tgaatcttca
     2941 ttttaattga tctttttatt gctgcactag ataaaagaag aaggacaatt tttatctgat
     3001 tatacggaga agcatctttt tgtacataga aagggggaaa aacaaactta aattcgaata
     3061 gctggattgt agtagtgcta agagacaaaa aaaggttgac catgtaaaca cttacataag
     3121 gtcatggaca ctctgttggc cgggagctac ttagagtagt aaaggaaata tgattgttct
     3181 tgagccaaag tcatttagtt tgagtataat gaaacatacc ctgatggtaa agactactgg
     3241 aaagtaaaag gattcctctt cagagattgt agaaggtgcc cttcttagtt aaaaccaaac
     3301 tgggaaaagt aatactgggt ataatataca gtattaattt tattccagac aaatttcata
     3361 gggcaattat ttctttctgt ttcattattg aattttcaga atatagttaa agcaaaaagc
     3421 ttgaaatatg ttaaaggttt agctcatagc cataatcttt ttacataaag tatattctgc
     3481 cttcagtaat aagtaaatcc tctgcatatg ttaactgggt aatatcgtaa gtgtaattaa
     3541 atggcccaga ctttaaatga taacgtaaaa gcacatccta aatatatttt ccttgagcca
     3601 caaagagctg aacaactgaa aggtgttttc cttttgcctt tctcacagtg ttatcataag
     3661 gatcagatga gctaatgata tgactacaca ctttggaaat tgtgaatatt tggtggtggt
     3721 gtttttcttt tttctgccta ggaagatacc aatggggaag ttaatggtgc cagggtccca
     3781 cttatttacc tttctaagct actcagtgtg attcccattc tcttcggtgt tctttttctc
     3841 ctcccctgca gtgtcttcta tattccttgt cccttcaggg agataaggaa tatagataaa
     3901 tggatcccag cagacatgtc ctgacctttt gggggaggga cagggcataa tgatgccgtt
     3961 ctgcaaaggc agcctgcgtg agaaaaagaa accaaatgat gtggatttta aaattatgaa
     4021 agacattcat ttacagttta tgaaagggaa atgtggtttg gaagcaaagc tgattaaatt
     4081 ggatcaagaa aaattggaat taaatacaaa aaataatgca tgcatttatg gtttcaattt
     4141 ttatatatcc tcagctagtt gaaaatgatg attcccacaa caagcataac tcatcttgtt
     4201 tctgcttact gagtattttc tactatggta tatgttgaca acatttctta cctcatgtat
     4261 gttgtacagc agagttacag ttactgtggg aatcataatt tgaaattttg acttatgtgt
     4321 ttctggaacg tttacaataa atgttgcatt aacatagaac ttcttttcat tgattttacc
     4381 aaaattaaat tcatctatag cagatatact gttttaactt atgaaagaaa cattttataa
     4441 acataccaca aggtatggct gtaaaatgag atcagtctcc atttcacttt atggaatcag
     4501 ccccattact tcactgtcac atttcctgcc tgagtgcatg agtgcattac ctgctcatgt
     4561 acctgatgcg taaatgtgaa agtctttcag ttcatggaca atacacctta gtaataaccg
     4621 gtcttcttcc ttttagtgca aaattttact gtttcggaaa tgtgctatga aatatttgtt
     4681 ataaattaac tgagtagacc cttgaatgac gggattgata tagatgaagg tgtgaccaag
     4741 aaactcatta ttaaaaattc gtttactcca ca
//
LOCUS       XM_032605385             579 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primary cilia formation (PIFO), mRNA.
ACCESSION   XM_032605385
VERSION     XM_032605385.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..579
                     /gene="PIFO"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins"
                     /db_xref="GeneID:116740131"
     CDS             1..579
                     /gene="PIFO"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:304..306,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: protein pitchfork"
                     /protein_id="XP_032461276.1"
                     /db_xref="GeneID:116740131"
                     /translation="MCFNKAEPLVNYSFGTCQQRKVFPHSCPPSLLGNKFLPFRGEPN
                     RGPGCYIAEDRYGLAYNLSKVPTSIKGYAFGARTAVRFKPINKDMTPYPGMYQTVNPX
                     EQKHKHNFAPFNSLLPRFRTYSKDSCYPGPTTYNPEIKPPKKVTWPMKFGSPDWAQVP
                     CLQKRTLRAELPTDKDFRKHRNRVAYLSLYYN"
ORIGIN      
        1 atgtgcttca ataaagcaga gccgctggtt aactactcct ttggaacatg tcaacagagg
       61 aaggtctttc ctcactcctg tcccccaagc ttgttgggga acaagtttct cccttttagg
      121 ggagaaccca acagagggcc tggatgttac atagcagaag ataggtatgg cttggcatac
      181 aacctctcta aggtcccgac cagtataaaa ggatatgctt ttggagccag aacagccgtg
      241 aggtttaagc caattaacaa ggatatgaca ccttacccag gcatgtacca gacagtcaat
      301 ccttgagagc aaaaacacaa acacaatttt gctccattta attctttgct gcctcgattt
      361 aggacatact caaaggactc ttgctatcct ggccccacca catacaaccc agagataaag
      421 ccacccaaaa aagtcacctg gccaatgaaa tttggatctc cagactgggc tcaggttcca
      481 tgtctacaga aaagaacatt gagagcagag ctgcccacag acaaagactt tagaaagcat
      541 cggaaccgtg tggcctacct aagcctgtat tacaactga
//
LOCUS       XM_032605400            2799 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 167B (TMEM167B),
            mRNA.
ACCESSION   XM_032605400
VERSION     XM_032605400.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2799
                     /gene="TMEM167B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 13 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740136"
     CDS             150..374
                     /gene="TMEM167B"
                     /codon_start=1
                     /product="protein kish-B"
                     /protein_id="XP_032461291.1"
                     /db_xref="GeneID:116740136"
                     /translation="MTNVYSLDGILVFGLLFVCTCAYFKKVPRLKSWLLSEKKGVWGV
                     FYKAAVIGTRLHAAVAIACVVMAFYVLFIK"
     misc_feature    180..287
                     /gene="TMEM167B"
                     /note="Protein of unknown function (DUF1242); Region:
                     DUF1242; pfam06842"
                     /db_xref="CDD:462019"
ORIGIN      
        1 cgtctctctg cccttgcacc tgcgtactac ggcgcctgcc cgtcgccgcg gcccggatcg
       61 ggaagtgtca agcgggagct gggttccccc gcctttgccg ctatcaccgc tgaccccgga
      121 ccccaactcc aggcccgggc ccagccgcca tgacgaacgt gtactccttg gatgggattc
      181 tggtgtttgg tttgctcttt gtttgcacct gtgcctactt caagaaagta cctcgtctca
      241 aaagctggct gctctcagag aagaagggag tttggggtgt gttttacaaa gctgctgtga
      301 ttggaactag gctgcatgct gctgtagcaa tcgcctgcgt tgtaatggcc ttctacgtcc
      361 tgtttataaa atgaattcca aagcatccat ttcatcaact gccaaccaag gggacgaagg
      421 tcaagagcct gtcaggagcc tgggcccagc gtaggagagt tcagctaaaa tcatcaaagt
      481 ccccaggatg acaccacagc atctgcccct accttatgtg gggaaaactc ctcgtggtta
      541 caaacattat ttatgcttca ggggactaca gaaagccagc ttcctttgac ctgtgtgtaa
      601 atcagtcctc agcagagagc atataatgtc cagatgaatt atacccctca gtgatacgat
      661 tacatacctc ctgcttaaaa atctgtcacc tattttgtgc ttcagcccct catcaggaac
      721 ttttcacact gaggctcatt aggggaggat ataagctgta ttcaaacttc ttggaaggag
      781 agataatttt caagacttga cttttttttt agtgtttgat ttggatttgg caaattgcag
      841 ggggctggga ggctggggtg gggaggctgg gtgggaaata ggagttaaac aatgccaagg
      901 aattttttgg ctttggaaat ttatctttca tatacccgtc tgggaacata agagagaggc
      961 atgatcctca ttgcaaaaag agaacagacg aaatagctgt gctgtgtgct ggtagccaga
     1021 gagttttgcc aagagaatct gggcctacat aagatttgga aattgtctgt gatgagacca
     1081 gaaaggagta acttagacaa gaaacaatgt tctattcacc agtattccca aaaggaaact
     1141 tcaccccctc aaatggtata ttgaaactgt tgctattttc ctaaagcttt ttaaatattt
     1201 tctaaattac tgagtgctaa atactgttac gcagttttaa atgccaccac taggggcaag
     1261 agaaactatt gaagaaataa tttgcagttg gggtagaaga aataaataaa tctagtatat
     1321 taattcatat actagtaaag tcatctagaa tttattgtga tgttagatgg aagttctgtc
     1381 atgttaacca acatacaaac ttattttttg tttaaatctg ggttatggca attttcagtc
     1441 gattacttgt gtttcttggc ccacttttaa ttttcttcat attgtagtat ttagctgtct
     1501 cttggaaatt ataagaacat gggaaatttg aatgagagaa gttgatggca ttcataggca
     1561 tgtttggaca gttcatagaa tccatgaata aaatgagagt gttttctaaa gtaaaggaaa
     1621 gcagaggttc gcaattgaga ttgatgggct tttccatgga gtatgggaac tcctgaacaa
     1681 atcattttag atgactctac atttgaagtg aagacttatc cattccctcc tccttttatc
     1741 tgcaaaagga tcaactgttg catttctgaa gcctagaact tctctattaa aaaaaaaaag
     1801 aattggtcta aaattaaatt attgtaaaga gcaagcagag acataggtct accagtggaa
     1861 ttattcacta aagtaaactt gactgtggac aagttggctg tggttgaccc cagtgtggca
     1921 gtaaattgtc ttttgtctta ttccaaaaga acaaaagctg ctaggaagtt taggttctga
     1981 aacattcagt ttagtgcttt gatggttcct agaagtatag aaagtcatca agtaaacact
     2041 acatgtctaa tcatctcaga gttatggctg ttgtctcttc aggaattggt ccacagggta
     2101 aatttcaatg attcatatat ttttcattgt catttctgag gatctttcac acaagagaaa
     2161 ggaaagctag tggaacagaa agaagagtta caccttgtgg gtgtgagttt ggaacctgtt
     2221 ggccaacggg aatgtcactc tctggaaata caggttcagc atgttttgca cttgttattt
     2281 tgtagcttta atgacttttg tttcctaata gggctaatat ctctaagctt ggtgtttaga
     2341 gcttcttcat attttaaact agtcccattt cacagttcag atcaattttt acagcctcct
     2401 gggtgggtca tcttgaccta agctcttgaa ctgttatatt ttgagatgtt ttcataccag
     2461 aatgtaccaa aaagtacaca gagtgaaggt aatttacagc aagaaacaaa tacacagctt
     2521 atttcatttc ttgactttag ataagcagaa acttgtttaa ttcatcactt tggttgatgt
     2581 gtcatatatt tttgactgaa aattgtagga agttgttcct ctaagggagt cttttagggg
     2641 tggaagaagg gggatagcag tattgcctca gatccaaact ggcgtcacca taaaccctgt
     2701 atgccagggt ggaatgaagt cagcttttta tagttgaaat aagacttttt attcaccatt
     2761 gtctgcacaa atccttgaaa ataaagtttc tttccctac
//
LOCUS       XM_032605414            2595 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphthamide biosynthesis 2 (DPH2),
            transcript variant X1, mRNA.
ACCESSION   XM_032605414
VERSION     XM_032605414.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2595
                     /gene="DPH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 91% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740141"
     CDS             254..1804
                     /gene="DPH2"
                     /codon_start=1
                     /product="2-(3-amino-3-carboxypropyl)histidine synthase
                     subunit 2 isoform X1"
                     /protein_id="XP_032461305.1"
                     /db_xref="GeneID:116740141"
                     /translation="MESTFSSPAETALQLEAGAAGLRTPLGDLDRVYELERVVGFVRD
                     LGCQRVALQFPDQLLGDAGAVAARLEEATGSKVFILGDTAYGSCCVDVLGAEQAGAQA
                     LVHFGPACLSPPARPLPIAFVLGQRSVALELCAKAFEAQNPDPTAPVVLLSEPACAHA
                     LEALATLLRPRYLDLLVSSPALPLPVGSLNPDPEPLERFGRRFPLAPGRCLEEYGAFY
                     VGGSEAISDPDLDPDLSRLLLGWAPGRPFSSCCPDTGRTQDEGARAWRLRARRRYLVE
                     RARDARVVGLLAGTLGVARHREALAHLRNLTQAAGKRSYVLALGRPTPAKLANFPEVD
                     VFVLLACPLGALATQPSGSFFRPVLAPCELEAACNPAWPPPGLAPHLTHYADLLPGSP
                     FHVPLPPPDSELWDTPDVSLITGDLRPPPAWKPSTDPGCSALTPRPQLELAESSPAGE
                     CGKSPLPSEFFPYVQATQPQSPPSAASFLSSRSWQGLQPCLGQTPVTAAVTGRRGIAI
                     AYEDEGSS"
     misc_feature    347..1357
                     /gene="DPH2"
                     /note="diphthamide biosynthesis enzyme Dph1/Dph2 domain;
                     Region: diphth2_R; TIGR00322"
                     /db_xref="CDD:273013"
ORIGIN      
        1 gcctcaagca cccggaagta atctccctgg gaggcccacg tgtagcggag aaacgggagt
       61 ttggatgggt cggggcctgg cccaacggct gcgggctgac tgactcccca ccaccaccac
      121 tccctcctcc ccccccactc cctcccccca cccctccccc gcccgcccac caagcgactc
      181 cgacactatg agggccgttt ttgagaaggc ggggcctgaa gctaattgag ggaggtcccc
      241 gctgcctccc gccatggagt ctacattcag cagccccgcg gagacggcgc tgcagctaga
      301 ggcgggcgct gccgggctgc gcactcctct tggggacctg gaccgagtgt atgagctgga
      361 gcgagtcgtt ggatttgtcc gcgacctggg gtgtcaacgg gtggccttgc agttccctga
      421 tcagctattg ggagatgctg gggccgtggc tgcacgactg gaggaggcca cagggtcgaa
      481 ggtgttcatt ctgggagaca cagcctatgg cagctgctgt gtggatgtac tgggtgctga
      541 gcaagctgga gctcaggccc ttgtacattt tggccctgcc tgcttaagcc ctcctgcccg
      601 cccactgccc attgccttcg tccttggtca gcgatctgtg gccttggagc tctgcgctaa
      661 ggccttcgag gcccagaacc cagaccccac agcgcctgtg gtgctgctga gtgagccggc
      721 ctgtgcccac gccctggagg ccttggccac ccttctgcgc ccacggtacc tggacctgct
      781 tgtctccagc ccagctcttc ccctgccagt gggctccctc aacccagatc ctgagcccct
      841 ggagcgtttt gggcgccgct tccccctggc tccagggagg tgtttggaag agtatggtgc
      901 cttctatgtg gggggctctg aggccatctc tgaccctgac cttgacccag acctgagccg
      961 actgctcttg ggctgggcac cagggcggcc cttctcctcc tgctgcccag acacagggcg
     1021 gactcaggat gaaggtgccc gggcttggcg gctaagagca cgtagacgct atctggtaga
     1081 gagggccaga gatgcccgtg tggtggggct gctggcgggc acgttgggtg tggcccgaca
     1141 ccgtgaggca ctggcacact tgcggaacct gacacaggct gctggcaagc gtagctacgt
     1201 gttggccctg gggcgaccca cgcctgccaa gcttgccaac ttccctgagg tggatgtctt
     1261 tgtgctgttg gcctgtcctc tgggtgccct agccacccag ccttctggaa gcttcttccg
     1321 gcctgtattg gcaccgtgtg agctggaggc tgcctgcaac cctgcatggc cacctccagg
     1381 cctggctccc cacctcacac attatgcgga cttactgcct ggctctccct tccacgtgcc
     1441 cctccctcca cctgactccg agctgtggga caccccagat gtgtcactca ttactggcga
     1501 cctccgaccc ccacctgcct ggaagccatc aactgatcct ggatgctcag ccctaacccc
     1561 gaggccccag ctggagctgg ctgagagcag ccctgcaggt gagtgtggca aatctccact
     1621 cccatctgaa ttcttcccct atgttcaggc cactcagcct caatcccctc cctctgcagc
     1681 ctcattcctt agttcccgga gctggcaggg actgcaaccc tgcctgggtc agacgccggt
     1741 gacggcagct gtgaccggaa gacgagggat tgccatcgcc tacgaggatg agggaagcag
     1801 ctgataccat gtggggccag agccacaggt ggacttgaag acctttagtg ctccctgcac
     1861 caactccact cttctgccag gatccttgaa ggagcctgtc actgaggcag cccctcactg
     1921 gggataggat tcagctcttc ctgtcctggc gctggcacaa ggcttagcac atattggctt
     1981 ggtaaatatc tgttgtttga ctgatgcgga aacagctttg ggtcttccct gaagccttct
     2041 gggccatctg ttctcccggg aacaacagca caagacagtt gagggtctgc ctttgttaaa
     2101 ggcaggtgct aaatggttta gaccatggtt tctcaatctt ggcactattg acactttggg
     2161 ccagataatt atttgttgtg aggggctgtc ctgggcattg taggatattt agcatcatct
     2221 ctggtttctg cccagtaggt tctggtagca cgcccctccc cagttgtgat gaccagaaat
     2281 gtctccagat gttggcaaat gtcccctatg ggggcaaaag cgtccccagt tgagaaccac
     2341 tcgtctgcac ctatgctgtc caatacagtg gccacatgtg gctgttcaaa cataaatttg
     2401 aattaagtaa gattaaaaac tcagtttctc aatcacacta atcacattgc agtgctcaga
     2461 gccacatgag aggacagtgc agctataaga catttccatc attgcaaaaa gttctgtcgg
     2521 ccagtgctgg tctacactga ctccaattag tttctcaggg agatcacaga aatttgaata
     2581 aaccagataa ttttt
//
LOCUS       XM_032605424            2485 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphthamide biosynthesis 2 (DPH2),
            transcript variant X2, mRNA.
ACCESSION   XM_032605424
VERSION     XM_032605424.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2485
                     /gene="DPH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 7 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740141"
     CDS             225..1694
                     /gene="DPH2"
                     /codon_start=1
                     /product="2-(3-amino-3-carboxypropyl)histidine synthase
                     subunit 2 isoform X2"
                     /protein_id="XP_032461315.1"
                     /db_xref="GeneID:116740141"
                     /translation="MESTFSSPAETALQLEAGAAGLRTPLGDLDRVYELERVVGFVRD
                     LGCQRVALQFPDQLLGDAGAVAARLEEATGSKVFILGDTAYGSCCVDVLGAEQAGAQA
                     LVHFGPACLSPPARPLPIAFVLGQRSVALELCAKAFEAQNPDPTAPVVLLSEPACAHA
                     LEALATLLRPRYLDLLVSSPALPLPVGSLNPDPEPLERFGRRFPLAPGRCLEEYGAFY
                     VGGSEAISDPDLDPDLSRLLLGWAPGRPFSSCCPDTGRTQDEGARAWRLRARRRYLVE
                     RARDARVVGLLAGTLGVARHREALAHLRNLTQAAGKRSYVLALGRPTPAKLANFPEVD
                     VFVLLACPLGALATQPSGSFFRPVLAPCELEAACNPAWPPPGLAPHLTHYADLLPGSP
                     FHVPLPPPDSELWDTPDVSLITGDLRPPPAWKPSTDPGCSALTPRPQLELAESSPAAS
                     FLSSRSWQGLQPCLGQTPVTAAVTGRRGIAIAYEDEGSS"
     misc_feature    318..1328
                     /gene="DPH2"
                     /note="diphthamide biosynthesis enzyme Dph1/Dph2 domain;
                     Region: diphth2_R; TIGR00322"
                     /db_xref="CDD:273013"
ORIGIN      
        1 ggaggcccac gtgtagcgga gaaacgggag tttggatggg tcggggcctg gcccaacggc
       61 tgcgggctga ctgactcccc accaccacca ctccctcctc cccccccact ccctcccccc
      121 acccctcccc cgcccgccca ccaagcgact ccgacactat gagggccgtt tttgagaagg
      181 cggggcctga agctaattga gggaggtccc cgctgcctcc cgccatggag tctacattca
      241 gcagccccgc ggagacggcg ctgcagctag aggcgggcgc tgccgggctg cgcactcctc
      301 ttggggacct ggaccgagtg tatgagctgg agcgagtcgt tggatttgtc cgcgacctgg
      361 ggtgtcaacg ggtggccttg cagttccctg atcagctatt gggagatgct ggggccgtgg
      421 ctgcacgact ggaggaggcc acagggtcga aggtgttcat tctgggagac acagcctatg
      481 gcagctgctg tgtggatgta ctgggtgctg agcaagctgg agctcaggcc cttgtacatt
      541 ttggccctgc ctgcttaagc cctcctgccc gcccactgcc cattgccttc gtccttggtc
      601 agcgatctgt ggccttggag ctctgcgcta aggccttcga ggcccagaac ccagacccca
      661 cagcgcctgt ggtgctgctg agtgagccgg cctgtgccca cgccctggag gccttggcca
      721 cccttctgcg cccacggtac ctggacctgc ttgtctccag cccagctctt cccctgccag
      781 tgggctccct caacccagat cctgagcccc tggagcgttt tgggcgccgc ttccccctgg
      841 ctccagggag gtgtttggaa gagtatggtg ccttctatgt ggggggctct gaggccatct
      901 ctgaccctga ccttgaccca gacctgagcc gactgctctt gggctgggca ccagggcggc
      961 ccttctcctc ctgctgccca gacacagggc ggactcagga tgaaggtgcc cgggcttggc
     1021 ggctaagagc acgtagacgc tatctggtag agagggccag agatgcccgt gtggtggggc
     1081 tgctggcggg cacgttgggt gtggcccgac accgtgaggc actggcacac ttgcggaacc
     1141 tgacacaggc tgctggcaag cgtagctacg tgttggccct ggggcgaccc acgcctgcca
     1201 agcttgccaa cttccctgag gtggatgtct ttgtgctgtt ggcctgtcct ctgggtgccc
     1261 tagccaccca gccttctgga agcttcttcc ggcctgtatt ggcaccgtgt gagctggagg
     1321 ctgcctgcaa ccctgcatgg ccacctccag gcctggctcc ccacctcaca cattatgcgg
     1381 acttactgcc tggctctccc ttccacgtgc ccctccctcc acctgactcc gagctgtggg
     1441 acaccccaga tgtgtcactc attactggcg acctccgacc cccacctgcc tggaagccat
     1501 caactgatcc tggatgctca gccctaaccc cgaggcccca gctggagctg gctgagagca
     1561 gccctgcagc ctcattcctt agttcccgga gctggcaggg actgcaaccc tgcctgggtc
     1621 agacgccggt gacggcagct gtgaccggaa gacgagggat tgccatcgcc tacgaggatg
     1681 agggaagcag ctgataccat gtggggccag agccacaggt ggacttgaag acctttagtg
     1741 ctccctgcac caactccact cttctgccag gatccttgaa ggagcctgtc actgaggcag
     1801 cccctcactg gggataggat tcagctcttc ctgtcctggc gctggcacaa ggcttagcac
     1861 atattggctt ggtaaatatc tgttgtttga ctgatgcgga aacagctttg ggtcttccct
     1921 gaagccttct gggccatctg ttctcccggg aacaacagca caagacagtt gagggtctgc
     1981 ctttgttaaa ggcaggtgct aaatggttta gaccatggtt tctcaatctt ggcactattg
     2041 acactttggg ccagataatt atttgttgtg aggggctgtc ctgggcattg taggatattt
     2101 agcatcatct ctggtttctg cccagtaggt tctggtagca cgcccctccc cagttgtgat
     2161 gaccagaaat gtctccagat gttggcaaat gtcccctatg ggggcaaaag cgtccccagt
     2221 tgagaaccac tcgtctgcac ctatgctgtc caatacagtg gccacatgtg gctgttcaaa
     2281 cataaatttg aattaagtaa gattaaaaac tcagtttctc aatcacacta atcacattgc
     2341 agtgctcaga gccacatgag aggacagtgc agctataaga catttccatc attgcaaaaa
     2401 gttctgtcgg ccagtgctgg tctacactga ctccaattag tttctcaggg agatcacaga
     2461 aatttgaata aaccagataa ttttt
//
LOCUS       XM_032605434            2249 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphthamide biosynthesis 2 (DPH2),
            transcript variant X3, mRNA.
ACCESSION   XM_032605434
VERSION     XM_032605434.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2249
                     /gene="DPH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 3 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740141"
     CDS             310..1458
                     /gene="DPH2"
                     /codon_start=1
                     /product="2-(3-amino-3-carboxypropyl)histidine synthase
                     subunit 2 isoform X3"
                     /protein_id="XP_032461325.1"
                     /db_xref="GeneID:116740141"
                     /translation="MSWSESLDLSATWGVNGWPCSSLISYWEMLGPWLHDWRRPQGRR
                     CSFWETQPMAEALATLLRPRYLDLLVSSPALPLPVGSLNPDPEPLERFGRRFPLAPGR
                     CLEEYGAFYVGGSEAISDPDLDPDLSRLLLGWAPGRPFSSCCPDTGRTQDEGARAWRL
                     RARRRYLVERARDARVVGLLAGTLGVARHREALAHLRNLTQAAGKRSYVLALGRPTPA
                     KLANFPEVDVFVLLACPLGALATQPSGSFFRPVLAPCELEAACNPAWPPPGLAPHLTH
                     YADLLPGSPFHVPLPPPDSELWDTPDVSLITGDLRPPPAWKPSTDPGCSALTPRPQLE
                     LAESSPAASFLSSRSWQGLQPCLGQTPVTAAVTGRRGIAIAYEDEGSS"
     misc_feature    <586..1437
                     /gene="DPH2"
                     /note="diphthamide biosynthesis enzyme Dph1/Dph2 domain;
                     Region: diphth2_R; cl19374"
                     /db_xref="CDD:473165"
ORIGIN      
        1 gtagcggaga aacgggagtt tggatgggtc ggggcctggc ccaacggctg cgggctgact
       61 gactccccac caccaccact ccctcctccc cccccactcc ctccccccac ccctcccccg
      121 cccgcccacc aagcgactcc gacactatga gggccgtttt tgagaaggcg gggcctgaag
      181 ctaattgagg gaggtccccg ctgcctcccg ccatggagtc tacattcagc agccccgcgg
      241 agacggcgct gcagctagag gcgggcgctg ccgggctgcg cactcctctt ggggacctgg
      301 accgagtgta tgagctggag cgagtcgttg gatttgtccg cgacctgggg tgtcaacggg
      361 tggccttgca gttccctgat cagctattgg gagatgctgg ggccgtggct gcacgactgg
      421 aggaggccac agggtcgaag gtgttcattc tgggagacac agcctatggc agaggccttg
      481 gccacccttc tgcgcccacg gtacctggac ctgcttgtct ccagcccagc tcttcccctg
      541 ccagtgggct ccctcaaccc agatcctgag cccctggagc gttttgggcg ccgcttcccc
      601 ctggctccag ggaggtgttt ggaagagtat ggtgccttct atgtgggggg ctctgaggcc
      661 atctctgacc ctgaccttga cccagacctg agccgactgc tcttgggctg ggcaccaggg
      721 cggcccttct cctcctgctg cccagacaca gggcggactc aggatgaagg tgcccgggct
      781 tggcggctaa gagcacgtag acgctatctg gtagagaggg ccagagatgc ccgtgtggtg
      841 gggctgctgg cgggcacgtt gggtgtggcc cgacaccgtg aggcactggc acacttgcgg
      901 aacctgacac aggctgctgg caagcgtagc tacgtgttgg ccctggggcg acccacgcct
      961 gccaagcttg ccaacttccc tgaggtggat gtctttgtgc tgttggcctg tcctctgggt
     1021 gccctagcca cccagccttc tggaagcttc ttccggcctg tattggcacc gtgtgagctg
     1081 gaggctgcct gcaaccctgc atggccacct ccaggcctgg ctccccacct cacacattat
     1141 gcggacttac tgcctggctc tcccttccac gtgcccctcc ctccacctga ctccgagctg
     1201 tgggacaccc cagatgtgtc actcattact ggcgacctcc gacccccacc tgcctggaag
     1261 ccatcaactg atcctggatg ctcagcccta accccgaggc cccagctgga gctggctgag
     1321 agcagccctg cagcctcatt ccttagttcc cggagctggc agggactgca accctgcctg
     1381 ggtcagacgc cggtgacggc agctgtgacc ggaagacgag ggattgccat cgcctacgag
     1441 gatgagggaa gcagctgata ccatgtgggg ccagagccac aggtggactt gaagaccttt
     1501 agtgctccct gcaccaactc cactcttctg ccaggatcct tgaaggagcc tgtcactgag
     1561 gcagcccctc actggggata ggattcagct cttcctgtcc tggcgctggc acaaggctta
     1621 gcacatattg gcttggtaaa tatctgttgt ttgactgatg cggaaacagc tttgggtctt
     1681 ccctgaagcc ttctgggcca tctgttctcc cgggaacaac agcacaagac agttgagggt
     1741 ctgcctttgt taaaggcagg tgctaaatgg tttagaccat ggtttctcaa tcttggcact
     1801 attgacactt tgggccagat aattatttgt tgtgaggggc tgtcctgggc attgtaggat
     1861 atttagcatc atctctggtt tctgcccagt aggttctggt agcacgcccc tccccagttg
     1921 tgatgaccag aaatgtctcc agatgttggc aaatgtcccc tatgggggca aaagcgtccc
     1981 cagttgagaa ccactcgtct gcacctatgc tgtccaatac agtggccaca tgtggctgtt
     2041 caaacataaa tttgaattaa gtaagattaa aaactcagtt tctcaatcac actaatcaca
     2101 ttgcagtgct cagagccaca tgagaggaca gtgcagctat aagacatttc catcattgca
     2161 aaaagttctg tcggccagtg ctggtctaca ctgactccaa ttagtttctc agggagatca
     2221 cagaaatttg aataaaccag ataattttt
//
LOCUS       XM_032605447             968 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase H+ transporting V0 subunit b
            (ATP6V0B), transcript variant X1, mRNA.
ACCESSION   XM_032605447
VERSION     XM_032605447.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..968
                     /gene="ATP6V0B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740150"
     CDS             88..705
                     /gene="ATP6V0B"
                     /codon_start=1
                     /product="V-type proton ATPase 21 kDa proteolipid subunit
                     isoform X1"
                     /protein_id="XP_032461338.1"
                     /db_xref="GeneID:116740150"
                     /translation="MTGLVLLYSGVFVAFWACLLVVGICYTIFDLGFRFDVAWFLTET
                     SPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAI
                     YGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGS
                     GAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD"
     misc_feature    232..420
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt1; cd18177"
                     /db_xref="CDD:349417"
     misc_feature    484..678
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt2; cd18178"
                     /db_xref="CDD:349418"
ORIGIN      
        1 tgcggggcgg acggcggact ccgggacgag gtttgagctc tggcccccca ccccgccccc
       61 gacccgagac ccgccgtcgt tgccgccatg actgggctag tgctgctcta ctccggggtc
      121 ttcgtggcct tctgggcctg cctgctcgtt gtgggaatct gctacaccat ttttgacttg
      181 ggcttccgct ttgatgtggc atggttcctg acggagactt cccccttcat gtggtcaaac
      241 ctgggcattg gcctagctat ctctctgtct gtggttgggg cagcatgggg catctatatc
      301 actggctctt ccatcattgg gggaggggtg aaggccccca ggattaagac caagaacctg
      361 gtcagcatca tcttctgtga ggctgtggcc atctacggca tcatcatggc gattgtcatt
      421 agcaacatgg ctgagccttt cagtgctact gaccccaagg ccattggcca tcgaaactac
      481 catgcaggtt actccatgtt tggggctggc ctcacagtgg gcctgtctaa cctcttctgt
      541 ggagtgtgcg tgggcatcgt gggcagtggt gccgccttgg ctgatgcaca gaaccccagc
      601 ctctttgtaa agattctcat tgtggagatc tttggcagtg ccatcggcct ctttggggtc
      661 atcgttgcga tccttcagac ctccagagtg aagatgggtg attagacgat ctgcgtgggc
      721 ggggccgtgc cccactctta tttatttgtg gttttcccgg gacagctgga gctgtgcccc
      781 ttaggctttc agggggcttt gtgttcaggg ccctccctgc actcacttct gaggcactgc
      841 ctggctggat ccgcagtgtg gggagtgggc tgctgttgac tgtgtgcagc ttggcacccg
      901 tgtcccacct ccacctccag cccatcttcc cagtgtttgt gaaataaaca tggtatttgt
      961 ctgggtca
//
LOCUS       XM_032605457             874 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase H+ transporting V0 subunit b
            (ATP6V0B), transcript variant X2, mRNA.
ACCESSION   XM_032605457
VERSION     XM_032605457.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..874
                     /gene="ATP6V0B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740150"
     CDS             135..611
                     /gene="ATP6V0B"
                     /codon_start=1
                     /product="V-type proton ATPase 21 kDa proteolipid subunit
                     isoform X2"
                     /protein_id="XP_032461348.1"
                     /db_xref="GeneID:116740150"
                     /translation="MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNL
                     VSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNL
                     FCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD"
     misc_feature    138..326
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt1; cd18177"
                     /db_xref="CDD:349417"
     misc_feature    390..584
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt2; cd18178"
                     /db_xref="CDD:349418"
ORIGIN      
        1 ggcgcgtcac gtgggcgagt caggtgacac tgcggggcgg acggcggact ccgggacgag
       61 gaatctgcta caccattttt gacttgggct tccgctttga tgtggcatgg ttcctgacgg
      121 agacttcccc cttcatgtgg tcaaacctgg gcattggcct agctatctct ctgtctgtgg
      181 ttggggcagc atggggcatc tatatcactg gctcttccat cattggggga ggggtgaagg
      241 cccccaggat taagaccaag aacctggtca gcatcatctt ctgtgaggct gtggccatct
      301 acggcatcat catggcgatt gtcattagca acatggctga gcctttcagt gctactgacc
      361 ccaaggccat tggccatcga aactaccatg caggttactc catgtttggg gctggcctca
      421 cagtgggcct gtctaacctc ttctgtggag tgtgcgtggg catcgtgggc agtggtgccg
      481 ccttggctga tgcacagaac cccagcctct ttgtaaagat tctcattgtg gagatctttg
      541 gcagtgccat cggcctcttt ggggtcatcg ttgcgatcct tcagacctcc agagtgaaga
      601 tgggtgatta gacgatctgc gtgggcgggg ccgtgcccca ctcttattta tttgtggttt
      661 tcccgggaca gctggagctg tgccccttag gctttcaggg ggctttgtgt tcagggccct
      721 ccctgcactc acttctgagg cactgcctgg ctggatccgc agtgtgggga gtgggctgct
      781 gttgactgtg tgcagcttgg cacccgtgtc ccacctccac ctccagccca tcttcccagt
      841 gtttgtgaaa taaacatggt atttgtctgg gtca
//
LOCUS       XM_032605467            1318 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase H+ transporting V0 subunit b
            (ATP6V0B), transcript variant X3, mRNA.
ACCESSION   XM_032605467
VERSION     XM_032605467.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1318
                     /gene="ATP6V0B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740150"
     CDS             579..1055
                     /gene="ATP6V0B"
                     /codon_start=1
                     /product="V-type proton ATPase 21 kDa proteolipid subunit
                     isoform X2"
                     /protein_id="XP_032461358.1"
                     /db_xref="GeneID:116740150"
                     /translation="MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNL
                     VSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNL
                     FCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD"
     misc_feature    582..770
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt1; cd18177"
                     /db_xref="CDD:349417"
     misc_feature    834..1028
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt2; cd18178"
                     /db_xref="CDD:349418"
ORIGIN      
        1 gagcccagcg gggaagcgga ggcttgggaa tactgggccc cggcgcgggc tttgcacccc
       61 gggctcctgg acttgcctcg cgtctgtccg ggcctctgac cccgacagag gagacccgta
      121 tctccagctg cttggggagg ggcgcgggcg gggctcgctg gggaccgcga gcgcaaccct
      181 tgtccgtttc tgtcactgcc gcccccttcc ctcgctccct gctgtcgtcc ctctcttgct
      241 cttgaccggc ctgcttgggt cacgagccgg ctgctccagt tcctcttttc ccagtagtct
      301 tgctctcccc ccacacgcac agcgtgttgg gtaaacagcg gctcggactg ggctggctgc
      361 atctggtggg gcctggccag agctcttgct ccctcccctt ctccagggta tttaggcctg
      421 ccggtggctc ctcttgacgg gtctgggtca gagaggtggt gtcacagagg ggatatgttc
      481 ctgaaggagt ggcagaaaac ggaggaatct gctacaccat ttttgacttg ggcttccgct
      541 ttgatgtggc atggttcctg acggagactt cccccttcat gtggtcaaac ctgggcattg
      601 gcctagctat ctctctgtct gtggttgggg cagcatgggg catctatatc actggctctt
      661 ccatcattgg gggaggggtg aaggccccca ggattaagac caagaacctg gtcagcatca
      721 tcttctgtga ggctgtggcc atctacggca tcatcatggc gattgtcatt agcaacatgg
      781 ctgagccttt cagtgctact gaccccaagg ccattggcca tcgaaactac catgcaggtt
      841 actccatgtt tggggctggc ctcacagtgg gcctgtctaa cctcttctgt ggagtgtgcg
      901 tgggcatcgt gggcagtggt gccgccttgg ctgatgcaca gaaccccagc ctctttgtaa
      961 agattctcat tgtggagatc tttggcagtg ccatcggcct ctttggggtc atcgttgcga
     1021 tccttcagac ctccagagtg aagatgggtg attagacgat ctgcgtgggc ggggccgtgc
     1081 cccactctta tttatttgtg gttttcccgg gacagctgga gctgtgcccc ttaggctttc
     1141 agggggcttt gtgttcaggg ccctccctgc actcacttct gaggcactgc ctggctggat
     1201 ccgcagtgtg gggagtgggc tgctgttgac tgtgtgcagc ttggcacccg tgtcccacct
     1261 ccacctccag cccatcttcc cagtgtttgt gaaataaaca tggtatttgt ctgggtca
//
LOCUS       XM_032605476             916 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase H+ transporting V0 subunit b
            (ATP6V0B), transcript variant X4, mRNA.
ACCESSION   XM_032605476
VERSION     XM_032605476.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..916
                     /gene="ATP6V0B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740150"
     CDS             177..653
                     /gene="ATP6V0B"
                     /codon_start=1
                     /product="V-type proton ATPase 21 kDa proteolipid subunit
                     isoform X2"
                     /protein_id="XP_032461367.1"
                     /db_xref="GeneID:116740150"
                     /translation="MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNL
                     VSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNL
                     FCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD"
     misc_feature    180..368
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt1; cd18177"
                     /db_xref="CDD:349417"
     misc_feature    432..626
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt2; cd18178"
                     /db_xref="CDD:349418"
ORIGIN      
        1 ggggcggacg gcggactccg ggacgaggtt tgagctctgg ccccccaccc cgcccccgac
       61 ccgagacccg ccgtcgttgc cgccatgact gggctagtgc tgctctactc cggggtcttc
      121 gtggccttct gggcctgcct gctcgttgtg ggttcctgac ggagacttcc cccttcatgt
      181 ggtcaaacct gggcattggc ctagctatct ctctgtctgt ggttggggca gcatggggca
      241 tctatatcac tggctcttcc atcattgggg gaggggtgaa ggcccccagg attaagacca
      301 agaacctggt cagcatcatc ttctgtgagg ctgtggccat ctacggcatc atcatggcga
      361 ttgtcattag caacatggct gagcctttca gtgctactga ccccaaggcc attggccatc
      421 gaaactacca tgcaggttac tccatgtttg gggctggcct cacagtgggc ctgtctaacc
      481 tcttctgtgg agtgtgcgtg ggcatcgtgg gcagtggtgc cgccttggct gatgcacaga
      541 accccagcct ctttgtaaag attctcattg tggagatctt tggcagtgcc atcggcctct
      601 ttggggtcat cgttgcgatc cttcagacct ccagagtgaa gatgggtgat tagacgatct
      661 gcgtgggcgg ggccgtgccc cactcttatt tatttgtggt tttcccggga cagctggagc
      721 tgtgcccctt aggctttcag ggggctttgt gttcagggcc ctccctgcac tcacttctga
      781 ggcactgcct ggctggatcc gcagtgtggg gagtgggctg ctgttgactg tgtgcagctt
      841 ggcacccgtg tcccacctcc acctccagcc catcttccca gtgtttgtga aataaacatg
      901 gtatttgtct gggtca
//
LOCUS       XM_032605487             799 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase H+ transporting V0 subunit b
            (ATP6V0B), transcript variant X5, mRNA.
ACCESSION   XM_032605487
VERSION     XM_032605487.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..799
                     /gene="ATP6V0B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740150"
     CDS             60..536
                     /gene="ATP6V0B"
                     /codon_start=1
                     /product="V-type proton ATPase 21 kDa proteolipid subunit
                     isoform X2"
                     /protein_id="XP_032461378.1"
                     /db_xref="GeneID:116740150"
                     /translation="MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNL
                     VSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNL
                     FCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD"
     misc_feature    63..251
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt1; cd18177"
                     /db_xref="CDD:349417"
     misc_feature    315..509
                     /gene="ATP6V0B"
                     /note="V-type proton ATPase 21 kDa proteolipid subunit
                     (ATP6F/ATP6V0B) and similar proteins; Region:
                     ATP-synt_Vo_c_ATP6F_rpt2; cd18178"
                     /db_xref="CDD:349418"
ORIGIN      
        1 acactgcggg gcggacggcg gactccggga cgaggttcct gacggagact tcccccttca
       61 tgtggtcaaa cctgggcatt ggcctagcta tctctctgtc tgtggttggg gcagcatggg
      121 gcatctatat cactggctct tccatcattg ggggaggggt gaaggccccc aggattaaga
      181 ccaagaacct ggtcagcatc atcttctgtg aggctgtggc catctacggc atcatcatgg
      241 cgattgtcat tagcaacatg gctgagcctt tcagtgctac tgaccccaag gccattggcc
      301 atcgaaacta ccatgcaggt tactccatgt ttggggctgg cctcacagtg ggcctgtcta
      361 acctcttctg tggagtgtgc gtgggcatcg tgggcagtgg tgccgccttg gctgatgcac
      421 agaaccccag cctctttgta aagattctca ttgtggagat ctttggcagt gccatcggcc
      481 tctttggggt catcgttgcg atccttcaga cctccagagt gaagatgggt gattagacga
      541 tctgcgtggg cggggccgtg ccccactctt atttatttgt ggttttcccg ggacagctgg
      601 agctgtgccc cttaggcttt cagggggctt tgtgttcagg gccctccctg cactcacttc
      661 tgaggcactg cctggctgga tccgcagtgt ggggagtggg ctgctgttga ctgtgtgcag
      721 cttggcaccc gtgtcccacc tccacctcca gcccatcttc ccagtgtttg tgaaataaac
      781 atggtatttg tctgggtca
//
LOCUS       XM_032605501            4950 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein-arginine deiminase type-2
            (LOC116740164), transcript variant X1, mRNA.
ACCESSION   XM_032605501
VERSION     XM_032605501.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4950
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4950
                     /gene="LOC116740164"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740164"
     CDS             77..2074
                     /gene="LOC116740164"
                     /codon_start=1
                     /product="protein-arginine deiminase type-2 isoform X1"
                     /protein_id="XP_032461392.1"
                     /db_xref="GeneID:116740164"
                     /translation="MLRERTVRLQYGSRVEAVYVLGTYLWTDVYSAAPAGAQTFSLKH
                     SERVQVEVVHDRQPEEVAADGKQRWPLSPSTTLRLTMSQASAEASSDKVTVNYYEEEG
                     VNPIDQAGLFLTAIEISLDVDADRDGVVEKNNPKKASWTWGPEGQGAILLVNCDRDTP
                     WLPREDCSDEKVYSKEDLKDMSQMILRTKGPDHLPTGYEIVLYISMSDSDKVGVFYVE
                     NPFFGQRYIHILGRRKLYHVVKYTGGSAELLFFVEGLRFPDEGFSGLVSIHVSLLEYM
                     AEEIPLTPIFTDTVTFRIAPWIMTPNTLPPLSVFVCCMKDNYLFLKEVKNLVEKTNCE
                     LKVCFQYMNRGDRWIQDEIEFGYIEAPHKGFPVVLDSPRDGNLKDFPVKQLLGPDFGY
                     VTREPLFEPVTSLDSFGNLEVSPPVTVNGKTYPLGRILIGSSFPLSGGRRMTKVVRDF
                     LQAQQVQAPVELYSDWLTVGHVDEFMTFVPIPGTKEFRMLMASTSACYKLFREKQKEG
                     HGEAIMFKGLGGMSSKRITINKILSNESLVQENQYFQRCLDWNRDILKKELGLTEQDI
                     IDLPALFKMDEDRQARAFFPNMVNMIVLSKDLGIPKPFGPQVEEVCCLETHVRSLLEP
                     LGLCCTFVDDISAYHKFLGEVHCGTNVRRKPFTFKWWHMVP"
     misc_feature    77..418
                     /gene="LOC116740164"
                     /note="Protein-arginine deiminase (PAD) N-terminal domain;
                     Region: PAD_N; pfam08526"
                     /db_xref="CDD:462509"
     misc_feature    422..898
                     /gene="LOC116740164"
                     /note="Protein-arginine deiminase (PAD) middle domain;
                     Region: PAD_M; pfam08527"
                     /db_xref="CDD:462510"
     misc_feature    926..2062
                     /gene="LOC116740164"
                     /note="Protein-arginine deiminase (PAD); Region: PAD;
                     pfam03068"
                     /db_xref="CDD:460794"
ORIGIN      
        1 ggggttacct gcggcaggtg ctccaggcag acccagaaga gagaggactg gcacggggcc
       61 gggcactacg gggaagatgc tgcgcgagcg gacggtgcgg ctgcagtacg ggagccgcgt
      121 ggaggcggtg tacgtgctgg gcacgtacct ctggaccgat gtctacagcg cggccccagc
      181 cggggcccag accttcagcc tgaagcactc ggagcgcgtg caggtggagg tggtgcacga
      241 caggcagcct gaggaggtgg ccgccgacgg caagcagcgc tggcctctct cgcccagcac
      301 cacgctgcgg ctcaccatga gccaggcgag cgccgaggcc agcagcgaca aggtcaccgt
      361 caactactat gaggaggagg gggtcaaccc catcgaccag gctgggctct tcctcacggc
      421 cattgagatc tccttggatg tggatgcaga ccgggacggc gtggtggaaa agaacaaccc
      481 aaaaaaggca tcctggacct ggggccctga ggggcaggga gccatcctgc tggtgaactg
      541 tgaccgagac acaccctggt tgcccagaga ggactgcagc gatgagaaag tctacagcaa
      601 ggaagacctc aaggacatgt cccagatgat cctgcggacc aaagggcccg accacctccc
      661 caccggatac gagatcgttc tctacatttc catgtcggac tcggacaaag tgggcgtgtt
      721 ctacgtggag aacccgtttt tcggccagcg ttatatccac atcctgggcc gccggaagct
      781 ctaccacgtg gtcaagtaca cgggcggctc tgccgagctg ctgttctttg tggaaggcct
      841 gcgttttccc gacgagggct tctcgggcct ggtctccatc cacgtcagcc tgctggagta
      901 tatggccgag gagatccccc tgacacccat cttcacggac accgtgacgt tccggattgc
      961 tccgtggatc atgaccccca acacgctgcc tcctttgtcg gtgtttgtgt gctgcatgaa
     1021 ggacaattac ttgttcctga aagaggtgaa gaacctggtt gagaaaacca actgtgaact
     1081 gaaggtctgc ttccaataca tgaaccgggg agatcgctgg atccaggatg aaatcgagtt
     1141 tggctacatc gaggcccccc acaaaggctt ccctgtggtt ctggactccc ccagagatgg
     1201 aaacctgaag gatttcccag tgaagcagct cctgggccca gattttggct acgtgacccg
     1261 ggagcccctc tttgagcctg tcaccagcct tgattccttt gggaacctag aggtcagtcc
     1321 gccagtgacc gtgaatggca agacataccc cctgggccgg atcctcatcg ggagcagctt
     1381 tcctctgtct ggtggtcgga ggatgaccaa ggtggtgagg gacttcctgc aggcccagca
     1441 ggtgcaggca cccgtggagc tctactcgga ctggctgacc gtgggccatg tagatgagtt
     1501 catgacattc gtccccatcc caggcacaaa ggaattccgg atgcttatgg ccagcacctc
     1561 ggcctgctac aagctcttcc gagagaagca gaaggagggc catggggagg ccatcatgtt
     1621 caaaggcttg ggcgggatga gcagcaagcg aatcaccatc aacaagattc tgtccaacga
     1681 gagcctcgtg caggagaacc agtacttcca gcgctgcctg gactggaacc gcgacatcct
     1741 caagaaggag ctggggctga cggagcagga tatcatcgac ctgcctgccc tcttcaagat
     1801 ggacgaggac cgccaggcca gagccttctt cccaaacatg gtgaacatga ttgtgctcag
     1861 caaggacctg ggcatcccca agccatttgg gccccaggtt gaggaggtgt gctgcctgga
     1921 gacacatgtg cgctccctgc tggagcccct gggcctctgc tgcaccttcg tggatgacat
     1981 ctccgcctac cacaaatttc tgggggaggt gcactgcggc accaacgtac gcaggaagcc
     2041 cttcaccttc aagtggtggc acatggtacc ctgacctgca gggggctgtt gtgtgcctgt
     2101 cacagcccat caacaaccag tgttgaggct ggaccaaccc ttgtggtttt tattatgatt
     2161 gtaaaatgcg cttcagcaat aactatgagg aaacttgggg ggaaacgttt attacttttc
     2221 tttttttttt tacttatagg acctggaaat aactggcaca cctggggcca cacagtgagg
     2281 tcatggggag agagagagag aacccacgga actggggttc tgcttttacg gaagttgagg
     2341 gtgagggcct aggatttcga gggctcactc tttattggtg aatttaaagc ataagagtgg
     2401 gaatttaaag cgaggaaaga ggaaaaaggc aggtggccca aatggtcagt tatcaaaagc
     2461 aatcaagatc tctaaaagag aggagcctca gtgtggggag gcagcctggc tcttcatcta
     2521 gttgtgtggc tgacaacgtg tttactcaag atcgccatgt ttgaagtgga tattagcaat
     2581 caaagctgag tcaggcactc gtattagaag aaggagaaaa tctgactgtc agggttcaca
     2641 ctacaggggc ctgggcacct ccctccttcc ttgagttctc cagactcttc acacccccag
     2701 agaatccccc tgcctgacgt ggactggagg ccgcgacctc cagacgcggg gaggggattt
     2761 gagatatctg tgccttgcct tccctcagaa gggcctcagg gtccacgaag tcaccccctg
     2821 agcctccatg ctgtccttcc cgaaaatagc tggacatttg gccagtgtct gtatagccct
     2881 gacgtgaaaa acaaaacaaa acagaaaccg ctttacccaa acccttcccc aaagaatctt
     2941 tagtctcttg tccaaaactg aatgagggga gaagggaagg aggttctggg atgaccagtt
     3001 gtccctgtag ccatgccttg tgggtcaagg tagatggtat ggaaagggat tctggaaccc
     3061 cagatgtacc ttgaactgtc atcatccttt gaaattcacc tcccttggcc acctggacac
     3121 ccccaattat tcgttcctta acagcctcgg tcaaatcccc ttggctttcc ctctgccatg
     3181 cagacaccgt tggctagcct ccttagactt agactccctg agggtccagt aattgagctt
     3241 acaaccttcc ctggaagtgg attttatcag agcagccttc cctgtttaca agattcttat
     3301 gcttcttctt tctcatggac ccaggctctc ccagatgctt gggggctgct ccccacacca
     3361 gcatccttgt ggcctgagag ttcactgtat caagatgctc cagggtgagc catatccatc
     3421 ttctcttgct gggtccttga ttctcttgcc agttcctaac ctccctcttc tcacagcctc
     3481 cacttcctat tccaatgccg tctctcaaga cagctagaca aggacttctt ccccaccagc
     3541 caggctcaga ccttccccca ggacacaatg aaagacctgc ctctcctctc cagacctcag
     3601 atccaacaca taaagaccct gtcctaacct ccagcctgaa cagccagttc tgggccagct
     3661 gctggcctta gagacggatt gattatccca ttgaagtttc tcagtgcatt tgctgaagac
     3721 cctctcattt ggacataatc agattcattc tctggctcca actgaaaaga ctcagtttca
     3781 gctaaaaaat attcctttaa gggcagctga ttcaggagaa gaagtgaatt ataattctac
     3841 tttgagggtt agagaggaac tgatatataa ccaatgaaaa tgttgtaaat ttgtattctt
     3901 agagaatggg attttcttct tggattattc actcattcag caaacgtata ttgtatgcct
     3961 ccttaagtgc caggcgcagt ggtgggcccc gaggacacag tgcttagtag caaactgcat
     4021 ctggcccctg cctcatggag ccggtcagtt cccaacctga gatgcccaca cttaaacggc
     4081 cagcatttgc cctttcaggg atgtgctctt tagaaatacc aattcgctat attcaggaaa
     4141 tgtacaggac acagagcttc cagcaagtca ctatctcagt gaaatgaggg ggttgggtct
     4201 tctttaaaca ggcctccttc ccatccagct gggccagtac cacctaacag atcagacccc
     4261 agagccttca gaaactgttg tacccccctt tggggacagt ggctcctgcc tttgggggcc
     4321 aaagccccag atctctccaa ccccagagct gaagacacca agtgcctatt tgtggatgtt
     4381 tatctggaga cttagacttt ggggtgtgtg gggggtgtgt gtgtgtgtgt gtgtgtgtgt
     4441 gtgtgtgtgt gtgcgtgtgt ttggttaata tgggttttgg ggctttcttt catttttttc
     4501 tagtctgcct taaagggaag tgagtgcttc ccaggtggag acagtgtgtg tttctagatt
     4561 tttctaaggc tctccccatc aataagtcag taacttctga tgattctgga gccccgagga
     4621 ctcactcatt cccatcttgc ttgcccactc atgtgactac ccttggcacg gacatctccc
     4681 ccagtccccc cgggctcatc agtcttcccc acccaccact ttctataaat gtagacctag
     4741 aatacacttc tgtgttgcaa aactcagcta agttcctgtt tcaatcttta ttttgaaata
     4801 ctttgtataa gagagcagga ggtatcatga agatggcaac aagtggggca cagtttcagc
     4861 tttttctgga cgagaggcca tgctggagat caaaagacgt ttggggaaga acctgaataa
     4921 acagcaagaa aataaatggt cagatgggaa
//
LOCUS       XM_032605509            4731 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein-arginine deiminase type-2
            (LOC116740164), transcript variant X2, mRNA.
ACCESSION   XM_032605509
VERSION     XM_032605509.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4731
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4731
                     /gene="LOC116740164"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740164"
     CDS             149..1855
                     /gene="LOC116740164"
                     /codon_start=1
                     /product="protein-arginine deiminase type-2 isoform X2"
                     /protein_id="XP_032461400.1"
                     /db_xref="GeneID:116740164"
                     /translation="MRRRGSTPSTRLGSSSRPLRSPWMWMQTGTAWWKRTTQKKASWT
                     WGPEGQGAILLVNCDRDTPWLPREDCSDEKVYSKEDLKDMSQMILRTKGPDHLPTGYE
                     IVLYISMSDSDKVGVFYVENPFFGQRYIHILGRRKLYHVVKYTGGSAELLFFVEGLRF
                     PDEGFSGLVSIHVSLLEYMAEEIPLTPIFTDTVTFRIAPWIMTPNTLPPLSVFVCCMK
                     DNYLFLKEVKNLVEKTNCELKVCFQYMNRGDRWIQDEIEFGYIEAPHKGFPVVLDSPR
                     DGNLKDFPVKQLLGPDFGYVTREPLFEPVTSLDSFGNLEVSPPVTVNGKTYPLGRILI
                     GSSFPLSGGRRMTKVVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTFVPIPGTKEFRM
                     LMASTSACYKLFREKQKEGHGEAIMFKGLGGMSSKRITINKILSNESLVQENQYFQRC
                     LDWNRDILKKELGLTEQDIIDLPALFKMDEDRQARAFFPNMVNMIVLSKDLGIPKPFG
                     PQVEEVCCLETHVRSLLEPLGLCCTFVDDISAYHKFLGEVHCGTNVRRKPFTFKWWHM
                     VP"
     misc_feature    248..679
                     /gene="LOC116740164"
                     /note="Protein-arginine deiminase (PAD) middle domain;
                     Region: PAD_M; pfam08527"
                     /db_xref="CDD:462510"
     misc_feature    707..1843
                     /gene="LOC116740164"
                     /note="Protein-arginine deiminase (PAD); Region: PAD;
                     pfam03068"
                     /db_xref="CDD:460794"
ORIGIN      
        1 caggtggagg tggtgcacga caggcagcct gaggaggtgg ccgccgacgg caagcagcgc
       61 tggcctctct cgcccagcac cacgctgcgg ctcaccatga gccaggcgag cgccgaggcc
      121 agcagcgaca aggtcaccgt caactactat gaggaggagg gggtcaaccc catcgaccag
      181 gctgggctct tcctcacggc cattgagatc tccttggatg tggatgcaga ccgggacggc
      241 gtggtggaaa agaacaaccc aaaaaaaggc atcctggacc tggggccctg aggggcaggg
      301 agccatcctg ctggtgaact gtgaccgaga cacaccctgg ttgcccagag aggactgcag
      361 cgatgagaaa gtctacagca aggaagacct caaggacatg tcccagatga tcctgcggac
      421 caaagggccc gaccacctcc ccaccggata cgagatcgtt ctctacattt ccatgtcgga
      481 ctcggacaaa gtgggcgtgt tctacgtgga gaacccgttt ttcggccagc gttatatcca
      541 catcctgggc cgccggaagc tctaccacgt ggtcaagtac acgggcggct ctgccgagct
      601 gctgttcttt gtggaaggcc tgcgttttcc cgacgagggc ttctcgggcc tggtctccat
      661 ccacgtcagc ctgctggagt atatggccga ggagatcccc ctgacaccca tcttcacgga
      721 caccgtgacg ttccggattg ctccgtggat catgaccccc aacacgctgc ctcctttgtc
      781 ggtgtttgtg tgctgcatga aggacaatta cttgttcctg aaagaggtga agaacctggt
      841 tgagaaaacc aactgtgaac tgaaggtctg cttccaatac atgaaccggg gagatcgctg
      901 gatccaggat gaaatcgagt ttggctacat cgaggccccc cacaaaggct tccctgtggt
      961 tctggactcc cccagagatg gaaacctgaa ggatttccca gtgaagcagc tcctgggccc
     1021 agattttggc tacgtgaccc gggagcccct ctttgagcct gtcaccagcc ttgattcctt
     1081 tgggaaccta gaggtcagtc cgccagtgac cgtgaatggc aagacatacc ccctgggccg
     1141 gatcctcatc gggagcagct ttcctctgtc tggtggtcgg aggatgacca aggtggtgag
     1201 ggacttcctg caggcccagc aggtgcaggc acccgtggag ctctactcgg actggctgac
     1261 cgtgggccat gtagatgagt tcatgacatt cgtccccatc ccaggcacaa aggaattccg
     1321 gatgcttatg gccagcacct cggcctgcta caagctcttc cgagagaagc agaaggaggg
     1381 ccatggggag gccatcatgt tcaaaggctt gggcgggatg agcagcaagc gaatcaccat
     1441 caacaagatt ctgtccaacg agagcctcgt gcaggagaac cagtacttcc agcgctgcct
     1501 ggactggaac cgcgacatcc tcaagaagga gctggggctg acggagcagg atatcatcga
     1561 cctgcctgcc ctcttcaaga tggacgagga ccgccaggcc agagccttct tcccaaacat
     1621 ggtgaacatg attgtgctca gcaaggacct gggcatcccc aagccatttg ggccccaggt
     1681 tgaggaggtg tgctgcctgg agacacatgt gcgctccctg ctggagcccc tgggcctctg
     1741 ctgcaccttc gtggatgaca tctccgccta ccacaaattt ctgggggagg tgcactgcgg
     1801 caccaacgta cgcaggaagc ccttcacctt caagtggtgg cacatggtac cctgacctgc
     1861 agggggctgt tgtgtgcctg tcacagccca tcaacaacca gtgttgaggc tggaccaacc
     1921 cttgtggttt ttattatgat tgtaaaatgc gcttcagcaa taactatgag gaaacttggg
     1981 gggaaacgtt tattactttt cttttttttt ttacttatag gacctggaaa taactggcac
     2041 acctggggcc acacagtgag gtcatgggga gagagagaga gaacccacgg aactggggtt
     2101 ctgcttttac ggaagttgag ggtgagggcc taggatttcg agggctcact ctttattggt
     2161 gaatttaaag cataagagtg ggaatttaaa gcgaggaaag aggaaaaagg caggtggccc
     2221 aaatggtcag ttatcaaaag caatcaagat ctctaaaaga gaggagcctc agtgtgggga
     2281 ggcagcctgg ctcttcatct agttgtgtgg ctgacaacgt gtttactcaa gatcgccatg
     2341 tttgaagtgg atattagcaa tcaaagctga gtcaggcact cgtattagaa gaaggagaaa
     2401 atctgactgt cagggttcac actacagggg cctgggcacc tccctccttc cttgagttct
     2461 ccagactctt cacaccccca gagaatcccc ctgcctgacg tggactggag gccgcgacct
     2521 ccagacgcgg ggaggggatt tgagatatct gtgccttgcc ttccctcaga agggcctcag
     2581 ggtccacgaa gtcaccccct gagcctccat gctgtccttc ccgaaaatag ctggacattt
     2641 ggccagtgtc tgtatagccc tgacgtgaaa aacaaaacaa aacagaaacc gctttaccca
     2701 aacccttccc caaagaatct ttagtctctt gtccaaaact gaatgagggg agaagggaag
     2761 gaggttctgg gatgaccagt tgtccctgta gccatgcctt gtgggtcaag gtagatggta
     2821 tggaaaggga ttctggaacc ccagatgtac cttgaactgt catcatcctt tgaaattcac
     2881 ctcccttggc cacctggaca cccccaatta ttcgttcctt aacagcctcg gtcaaatccc
     2941 cttggctttc cctctgccat gcagacaccg ttggctagcc tccttagact tagactccct
     3001 gagggtccag taattgagct tacaaccttc cctggaagtg gattttatca gagcagcctt
     3061 ccctgtttac aagattctta tgcttcttct ttctcatgga cccaggctct cccagatgct
     3121 tgggggctgc tccccacacc agcatccttg tggcctgaga gttcactgta tcaagatgct
     3181 ccagggtgag ccatatccat cttctcttgc tgggtccttg attctcttgc cagttcctaa
     3241 cctccctctt ctcacagcct ccacttccta ttccaatgcc gtctctcaag acagctagac
     3301 aaggacttct tccccaccag ccaggctcag accttccccc aggacacaat gaaagacctg
     3361 cctctcctct ccagacctca gatccaacac ataaagaccc tgtcctaacc tccagcctga
     3421 acagccagtt ctgggccagc tgctggcctt agagacggat tgattatccc attgaagttt
     3481 ctcagtgcat ttgctgaaga ccctctcatt tggacataat cagattcatt ctctggctcc
     3541 aactgaaaag actcagtttc agctaaaaaa tattccttta agggcagctg attcaggaga
     3601 agaagtgaat tataattcta ctttgagggt tagagaggaa ctgatatata accaatgaaa
     3661 atgttgtaaa tttgtattct tagagaatgg gattttcttc ttggattatt cactcattca
     3721 gcaaacgtat attgtatgcc tccttaagtg ccaggcgcag tggtgggccc cgaggacaca
     3781 gtgcttagta gcaaactgca tctggcccct gcctcatgga gccggtcagt tcccaacctg
     3841 agatgcccac acttaaacgg ccagcatttg ccctttcagg gatgtgctct ttagaaatac
     3901 caattcgcta tattcaggaa atgtacagga cacagagctt ccagcaagtc actatctcag
     3961 tgaaatgagg gggttgggtc ttctttaaac aggcctcctt cccatccagc tgggccagta
     4021 ccacctaaca gatcagaccc cagagccttc agaaactgtt gtacccccct ttggggacag
     4081 tggctcctgc ctttgggggc caaagcccca gatctctcca accccagagc tgaagacacc
     4141 aagtgcctat ttgtggatgt ttatctggag acttagactt tggggtgtgt ggggggtgtg
     4201 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgcgtgtg tttggttaat atgggttttg
     4261 gggctttctt tcattttttt ctagtctgcc ttaaagggaa gtgagtgctt cccaggtgga
     4321 gacagtgtgt gtttctagat ttttctaagg ctctccccat caataagtca gtaacttctg
     4381 atgattctgg agccccgagg actcactcat tcccatcttg cttgcccact catgtgacta
     4441 cccttggcac ggacatctcc cccagtcccc ccgggctcat cagtcttccc cacccaccac
     4501 tttctataaa tgtagaccta gaatacactt ctgtgttgca aaactcagct aagttcctgt
     4561 ttcaatcttt attttgaaat actttgtata agagagcagg aggtatcatg aagatggcaa
     4621 caagtggggc acagtttcag ctttttctgg acgagaggcc atgctggaga tcaaaagacg
     4681 tttggggaag aacctgaata aacagcaaga aaataaatgg tcagatggga a
//
LOCUS       XM_032605519            4709 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein-arginine deiminase type-2
            (LOC116740164), transcript variant X3, mRNA.
ACCESSION   XM_032605519
VERSION     XM_032605519.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4709
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4709
                     /gene="LOC116740164"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740164"
     CDS             169..1833
                     /gene="LOC116740164"
                     /codon_start=1
                     /product="protein-arginine deiminase type-2 isoform X3"
                     /protein_id="XP_032461410.1"
                     /db_xref="GeneID:116740164"
                     /translation="MCLSPEISLDVDADRDGVVEKNNPKKASWTWGPEGQGAILLVNC
                     DRDTPWLPREDCSDEKVYSKEDLKDMSQMILRTKGPDHLPTGYEIVLYISMSDSDKVG
                     VFYVENPFFGQRYIHILGRRKLYHVVKYTGGSAELLFFVEGLRFPDEGFSGLVSIHVS
                     LLEYMAEEIPLTPIFTDTVTFRIAPWIMTPNTLPPLSVFVCCMKDNYLFLKEVKNLVE
                     KTNCELKVCFQYMNRGDRWIQDEIEFGYIEAPHKGFPVVLDSPRDGNLKDFPVKQLLG
                     PDFGYVTREPLFEPVTSLDSFGNLEVSPPVTVNGKTYPLGRILIGSSFPLSGGRRMTK
                     VVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTFVPIPGTKEFRMLMASTSACYKLFRE
                     KQKEGHGEAIMFKGLGGMSSKRITINKILSNESLVQENQYFQRCLDWNRDILKKELGL
                     TEQDIIDLPALFKMDEDRQARAFFPNMVNMIVLSKDLGIPKPFGPQVEEVCCLETHVR
                     SLLEPLGLCCTFVDDISAYHKFLGEVHCGTNVRRKPFTFKWWHMVP"
     misc_feature    184..657
                     /gene="LOC116740164"
                     /note="Protein-arginine deiminase (PAD) middle domain;
                     Region: PAD_M; pfam08527"
                     /db_xref="CDD:462510"
     misc_feature    685..1821
                     /gene="LOC116740164"
                     /note="Protein-arginine deiminase (PAD); Region: PAD;
                     pfam03068"
                     /db_xref="CDD:460794"
ORIGIN      
        1 ctgcctgtga tctgtgatct ctgcccttct ctccctccca atgtgtcccc tccctgtcaa
       61 ggtcaccgtc aactactatg aggaggaggg ggtcaacccc atcgaccagg ctgggctctt
      121 cctcacggcc attgccccac ccagtctggc aggctcagca actcacccat gtgtctgtcc
      181 ccagagatct ccttggatgt ggatgcagac cgggacggcg tggtggaaaa gaacaaccca
      241 aaaaaggcat cctggacctg gggccctgag gggcagggag ccatcctgct ggtgaactgt
      301 gaccgagaca caccctggtt gcccagagag gactgcagcg atgagaaagt ctacagcaag
      361 gaagacctca aggacatgtc ccagatgatc ctgcggacca aagggcccga ccacctcccc
      421 accggatacg agatcgttct ctacatttcc atgtcggact cggacaaagt gggcgtgttc
      481 tacgtggaga acccgttttt cggccagcgt tatatccaca tcctgggccg ccggaagctc
      541 taccacgtgg tcaagtacac gggcggctct gccgagctgc tgttctttgt ggaaggcctg
      601 cgttttcccg acgagggctt ctcgggcctg gtctccatcc acgtcagcct gctggagtat
      661 atggccgagg agatccccct gacacccatc ttcacggaca ccgtgacgtt ccggattgct
      721 ccgtggatca tgacccccaa cacgctgcct cctttgtcgg tgtttgtgtg ctgcatgaag
      781 gacaattact tgttcctgaa agaggtgaag aacctggttg agaaaaccaa ctgtgaactg
      841 aaggtctgct tccaatacat gaaccgggga gatcgctgga tccaggatga aatcgagttt
      901 ggctacatcg aggcccccca caaaggcttc cctgtggttc tggactcccc cagagatgga
      961 aacctgaagg atttcccagt gaagcagctc ctgggcccag attttggcta cgtgacccgg
     1021 gagcccctct ttgagcctgt caccagcctt gattcctttg ggaacctaga ggtcagtccg
     1081 ccagtgaccg tgaatggcaa gacatacccc ctgggccgga tcctcatcgg gagcagcttt
     1141 cctctgtctg gtggtcggag gatgaccaag gtggtgaggg acttcctgca ggcccagcag
     1201 gtgcaggcac ccgtggagct ctactcggac tggctgaccg tgggccatgt agatgagttc
     1261 atgacattcg tccccatccc aggcacaaag gaattccgga tgcttatggc cagcacctcg
     1321 gcctgctaca agctcttccg agagaagcag aaggagggcc atggggaggc catcatgttc
     1381 aaaggcttgg gcgggatgag cagcaagcga atcaccatca acaagattct gtccaacgag
     1441 agcctcgtgc aggagaacca gtacttccag cgctgcctgg actggaaccg cgacatcctc
     1501 aagaaggagc tggggctgac ggagcaggat atcatcgacc tgcctgccct cttcaagatg
     1561 gacgaggacc gccaggccag agccttcttc ccaaacatgg tgaacatgat tgtgctcagc
     1621 aaggacctgg gcatccccaa gccatttggg ccccaggttg aggaggtgtg ctgcctggag
     1681 acacatgtgc gctccctgct ggagcccctg ggcctctgct gcaccttcgt ggatgacatc
     1741 tccgcctacc acaaatttct gggggaggtg cactgcggca ccaacgtacg caggaagccc
     1801 ttcaccttca agtggtggca catggtaccc tgacctgcag ggggctgttg tgtgcctgtc
     1861 acagcccatc aacaaccagt gttgaggctg gaccaaccct tgtggttttt attatgattg
     1921 taaaatgcgc ttcagcaata actatgagga aacttggggg gaaacgttta ttacttttct
     1981 tttttttttt acttatagga cctggaaata actggcacac ctggggccac acagtgaggt
     2041 catggggaga gagagagaga acccacggaa ctggggttct gcttttacgg aagttgaggg
     2101 tgagggccta ggatttcgag ggctcactct ttattggtga atttaaagca taagagtggg
     2161 aatttaaagc gaggaaagag gaaaaaggca ggtggcccaa atggtcagtt atcaaaagca
     2221 atcaagatct ctaaaagaga ggagcctcag tgtggggagg cagcctggct cttcatctag
     2281 ttgtgtggct gacaacgtgt ttactcaaga tcgccatgtt tgaagtggat attagcaatc
     2341 aaagctgagt caggcactcg tattagaaga aggagaaaat ctgactgtca gggttcacac
     2401 tacaggggcc tgggcacctc cctccttcct tgagttctcc agactcttca cacccccaga
     2461 gaatccccct gcctgacgtg gactggaggc cgcgacctcc agacgcgggg aggggatttg
     2521 agatatctgt gccttgcctt ccctcagaag ggcctcaggg tccacgaagt caccccctga
     2581 gcctccatgc tgtccttccc gaaaatagct ggacatttgg ccagtgtctg tatagccctg
     2641 acgtgaaaaa caaaacaaaa cagaaaccgc tttacccaaa cccttcccca aagaatcttt
     2701 agtctcttgt ccaaaactga atgaggggag aagggaagga ggttctggga tgaccagttg
     2761 tccctgtagc catgccttgt gggtcaaggt agatggtatg gaaagggatt ctggaacccc
     2821 agatgtacct tgaactgtca tcatcctttg aaattcacct cccttggcca cctggacacc
     2881 cccaattatt cgttccttaa cagcctcggt caaatcccct tggctttccc tctgccatgc
     2941 agacaccgtt ggctagcctc cttagactta gactccctga gggtccagta attgagctta
     3001 caaccttccc tggaagtgga ttttatcaga gcagccttcc ctgtttacaa gattcttatg
     3061 cttcttcttt ctcatggacc caggctctcc cagatgcttg ggggctgctc cccacaccag
     3121 catccttgtg gcctgagagt tcactgtatc aagatgctcc agggtgagcc atatccatct
     3181 tctcttgctg ggtccttgat tctcttgcca gttcctaacc tccctcttct cacagcctcc
     3241 acttcctatt ccaatgccgt ctctcaagac agctagacaa ggacttcttc cccaccagcc
     3301 aggctcagac cttcccccag gacacaatga aagacctgcc tctcctctcc agacctcaga
     3361 tccaacacat aaagaccctg tcctaacctc cagcctgaac agccagttct gggccagctg
     3421 ctggccttag agacggattg attatcccat tgaagtttct cagtgcattt gctgaagacc
     3481 ctctcatttg gacataatca gattcattct ctggctccaa ctgaaaagac tcagtttcag
     3541 ctaaaaaata ttcctttaag ggcagctgat tcaggagaag aagtgaatta taattctact
     3601 ttgagggtta gagaggaact gatatataac caatgaaaat gttgtaaatt tgtattctta
     3661 gagaatggga ttttcttctt ggattattca ctcattcagc aaacgtatat tgtatgcctc
     3721 cttaagtgcc aggcgcagtg gtgggccccg aggacacagt gcttagtagc aaactgcatc
     3781 tggcccctgc ctcatggagc cggtcagttc ccaacctgag atgcccacac ttaaacggcc
     3841 agcatttgcc ctttcaggga tgtgctcttt agaaatacca attcgctata ttcaggaaat
     3901 gtacaggaca cagagcttcc agcaagtcac tatctcagtg aaatgagggg gttgggtctt
     3961 ctttaaacag gcctccttcc catccagctg ggccagtacc acctaacaga tcagacccca
     4021 gagccttcag aaactgttgt accccccttt ggggacagtg gctcctgcct ttgggggcca
     4081 aagccccaga tctctccaac cccagagctg aagacaccaa gtgcctattt gtggatgttt
     4141 atctggagac ttagactttg gggtgtgtgg ggggtgtgtg tgtgtgtgtg tgtgtgtgtg
     4201 tgtgtgtgtg tgcgtgtgtt tggttaatat gggttttggg gctttctttc atttttttct
     4261 agtctgcctt aaagggaagt gagtgcttcc caggtggaga cagtgtgtgt ttctagattt
     4321 ttctaaggct ctccccatca ataagtcagt aacttctgat gattctggag ccccgaggac
     4381 tcactcattc ccatcttgct tgcccactca tgtgactacc cttggcacgg acatctcccc
     4441 cagtcccccc gggctcatca gtcttcccca cccaccactt tctataaatg tagacctaga
     4501 atacacttct gtgttgcaaa actcagctaa gttcctgttt caatctttat tttgaaatac
     4561 tttgtataag agagcaggag gtatcatgaa gatggcaaca agtggggcac agtttcagct
     4621 ttttctggac gagaggccat gctggagatc aaaagacgtt tggggaagaa cctgaataaa
     4681 cagcaagaaa ataaatggtc agatgggaa
//
LOCUS       XM_032605541            3593 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATP binding cassette subfamily D member 3
            (ABCD3), mRNA.
ACCESSION   XM_032605541
VERSION     XM_032605541.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3593
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3593
                     /gene="ABCD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 15 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740181"
     CDS             85..2055
                     /gene="ABCD3"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family D member 3"
                     /protein_id="XP_032461432.1"
                     /db_xref="GeneID:116740181"
                     /translation="MAAFSKYLTVRNSSLAGAAFLLLCLLHKRRRALGLHGKKNGKPP
                     LRNNEKEGKKERAVVDKVFFSRLTRILKIMVPRTFCKETGYLILIAVMLVSRTYCDVW
                     MIQNGTLIESGIIGRSRKDFKKYLFNFIAAMPLISLVNNFLKFGLNELKLCFRVRLTK
                     YLYEEYLQTFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYI
                     FKLTSAIGAQGPASMMAYLLVSGLFLTRIRRPIGKMTITEQKLEGEYRYVNSRLITNS
                     EEIAFYNGNKREKQTIHSVFRKLVEHLHNFILFRFSMGFVDSIIAKYFATVVGYVVVS
                     RPFLDLSHPRHLKSSHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARIT
                     EIMQVLKDLNQGKYERTMVSQQEKGAQGIPLIPGVGEIINADNIIKFDHVPLATPNGD
                     ILIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERGKLFYVPQR
                     PYMTLGTLRDQVIYPDGREDQRKKGISDLVLKEYLDNVQLGHILEREGGWDSVLDWMD
                     VLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRK
                     SLWKHHEYYLHMDGRGNYEFKQITEDTVEFGS"
     misc_feature    85..2016
                     /gene="ABCD3"
                     /note="Peroxysomal Fatty Acyl CoA Transporter (FAT) Family
                     protein; Region: 3a01203; TIGR00954"
                     /db_xref="CDD:273360"
ORIGIN      
        1 ccagtctccc ccgcgcttcc tgcactacgg tagtcgccgc cgcgtccccg tgcctgtccc
       61 cgtctcgcta gcaaaggctg tgccatggcg gccttcagca agtacctgac cgtgcgaaac
      121 tcctcgctgg cgggggccgc gttcctgctg ctttgcctgc tccacaagcg gcgccgcgcc
      181 ctcggcctgc acggtaagaa aaatggaaaa ccaccattac ggaacaatga gaaagagggg
      241 aaaaaagaac gagctgtggt ggacaaggtg tttttttcaa ggctcacacg aattctgaaa
      301 atcatggtcc ctagaacatt ttgtaaagag acaggttact tgatacttat tgctgttatg
      361 ctggtgtctc gaacatattg tgatgtttgg atgattcaga atgggacact cattgaaagt
      421 ggtatcattg gtcgtagcag aaaagatttc aagaaatact tattcaactt catcgctgcc
      481 atgcctctca tttctctggt taataacttc ttgaagtttg ggttaaatga gctcaaactg
      541 tgcttccgag taagactaac taagtacctc tatgaggagt atctccaaac tttcacgtat
      601 tataaaatgg gaaatctgga caacagaata gctaatccag accagctgct tacacaagat
      661 gtagaaaagt tttgtaacag tgtagttgat ctgtattcaa atcttagtaa gccattttta
      721 gacatagttt tgtatatctt caagttaaca agtgcaatag gagctcaggg cccagcaagc
      781 atgatggcct acttgcttgt ttctgggcta ttcctaactc gaattagaag acccattggt
      841 aagatgacaa taactgagca aaagcttgaa ggagagtata gatacgttaa ttctcggctc
      901 atcacaaaca gtgaagaaat tgccttttac aatggaaata aaagagaaaa gcagacaatc
      961 cactcagtct tccgaaaact ggtggagcac ctacataatt tcattttgtt tcggttttct
     1021 atgggcttcg ttgatagcat aattgccaaa tattttgcca ctgtggttgg ttacgtagtt
     1081 gtcagtcgtc ctttcctaga tttgtctcat cctcgacatc tcaaaagctc acattcagaa
     1141 cttctggagg attactacca aagtggaaga atgcttttgc gaatgtctca agctctgggt
     1201 cgaatagttt tggctggccg tgaaatgaca agattggctg gctttactgc tcggattaca
     1261 gaaataatgc aagtactaaa ggatttaaat cagggcaaat atgaacgcac catggtctca
     1321 caacaggaaa aaggagcaca aggcattccc ttgatacctg gtgttggaga aatcatcaat
     1381 gcagataaca ttataaaatt tgatcatgtt cctttagcaa cgccaaatgg agatatcttg
     1441 attcgagacc ttaattttga agttcgatct ggggcaaacg ttctaatttg tggtccaaat
     1501 ggctgtggaa agagttcact tttccgtgtt cttggtgaat tatggcctct ttttggagga
     1561 cgtctaacta aacctgagag aggaaagtta ttttacgttc cccagagacc ttatatgacc
     1621 cttggaacac ttcgagacca agtgatatat ccagatggaa gagaagatca gagaaagaag
     1681 gggatttctg acctcgtact gaaggaatac ttagacaatg tccagctggg tcatatcctt
     1741 gaacgtgaag gaggctggga cagtgttctg gattggatgg atgtactcag tggtggagaa
     1801 aagcaaagaa tggcaatggc aagattattt tatcataagc cccagtttgc cattctggat
     1861 gaatgcacaa gtgcagttag tgtggatgtg gaagactaca tttacagtca ttgtcgaaag
     1921 gttggcatta ccctcttcac tgtgtcacat agaaagtctc tttggaaaca ccatgagtat
     1981 tacctgcata tggatggcag aggcaattat gaattcaaac agataacaga agatacagtt
     2041 gagtttggct cttagaatcc agagaactgt attgaaccag cttcaatgaa ataattacac
     2101 aatacaatta gaaatacaaa gtacattgta aaataaagtt gagcttgttt ttttaagcaa
     2161 aacaacaaat taactagata taaaataatc acgaataagt tgttgaaaca tttaatatta
     2221 tataggatat tgctaattgt gtatatgttg gtttaattat taatatgtac taagaatgtc
     2281 cttattcttg tggttaaaaa cctgcctaaa ttaaattggg cttaaatcag tgtaacctga
     2341 ttcatcctgg gatgtaaacc atttgaagtc agctactttg acttttatgg ctctatcttt
     2401 tccttcaatg aagaacccta tttaaaacta gggtcatcac ttgtcctgtt ctaacaaggt
     2461 agtcttgagt ttcattttct tgtgccccat gatactggga aacaaacaaa tcatagtgta
     2521 ttatcaaaat gtacatcttg gcataatggc cttaataccc tgtggcagat gtctttagct
     2581 gccacagtta tactcattcc ttatgtcttg gggtacattt gaatccagga aagccatttg
     2641 gattttcttt ggctaaataa taaatgtgcc actcgcaatc ttcattattg agttgttttg
     2701 agggttattt gtggtgatgc aacaaaagta tatgtgcagt cttttttttt ttaacatctt
     2761 tattggtgta taattgcttt acaatggtgt gttagtttct gctttataac caagtgaatc
     2821 agttatacat atgttcccat atgtcttccc tctttatgtg cagtcttgct tacaggggat
     2881 ggttactgtg tttcacacct aatcttctca gtgatgggat atgaaaacac gaagtcctta
     2941 catgtcaagc tcaaggtctt ataagatttt tagaattttt aaagaattgg atggatttgt
     3001 atacgttagg agcccattca ttagaagtgt ggtggttacg gggcgttaaa ctccagatga
     3061 gccataggaa tgtactacat gaagtaaagc actgagtatg caatgttatc actgtctttg
     3121 actgtgattt tatgtttaaa aaatatgtta taaaattatg cacatgaatg aattatgttt
     3181 cctaaggcac tggtttatct ctgtgactct ttaataactt ttttgtattt gggtcattat
     3241 gttgaactat atcctaagag aaatcaattt catctcacca gaccaccatt aatgactatg
     3301 tgtattattt gcacagggag aactgaaatt gagtattatc aataagctag atatgaaatc
     3361 agttttatca aactgggatt cagaaagggg ctttttatat tcttgtctct gcataactgg
     3421 tttgggtgtt ttttttgcag aattaactat aagaatcact gactaccaaa gttaaaactt
     3481 gatgtaccga ttccataata cataacattc aatttttacc acttctcttt agcaaacttg
     3541 tatacttact tattttctgt tcagattaaa aaagaatcag atatcctcta caa
//
LOCUS       XM_032605554            1386 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 3 (RWDD3),
            transcript variant X1, mRNA.
ACCESSION   XM_032605554
VERSION     XM_032605554.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1386
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1386
                     /gene="RWDD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 11
                     Proteins, and 87% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740189"
     CDS             27..830
                     /gene="RWDD3"
                     /codon_start=1
                     /product="RWD domain-containing protein 3 isoform X1"
                     /protein_id="XP_032461445.1"
                     /db_xref="GeneID:116740189"
                     /translation="MAELVREELSALGAIFCGPGEWEVLSCSETDGTVFRILTRAEGF
                     MDADIPLRLVFHLPVNYPSCLPGIVVNSEHLTRAECEIVKEKLLEQAETLLSEPMVHE
                     LVLWIQQNLRHILKRPEAGGGSEKCTSAASTTVDDGLWMTLLHLDHMRAKTKYVKSVE
                     KWASDLRLTGRLMFMGKVILILLQGDRNNIKEYLILQKTCKVDVDSSGKKCKEKMISV
                     LFETKVQTEHKRFLAFEVKEYSSLDELQKEFETAGLKKLFSEFVLRLVK"
     misc_feature    45..362
                     /gene="RWDD3"
                     /note="RWD domain of RWD domain-containing protein 3
                     (RWDD3) and related proteins; Region: RWD_RWDD3; cd23819"
                     /db_xref="CDD:467655"
     misc_feature    order(45..47,54..56,66..71,318..320,327..329,339..341)
                     /gene="RWDD3"
                     /note="Ubc9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:467655"
     misc_feature    441..767
                     /gene="RWDD3"
                     /note="RWD domain-containing protein 3, C-terminal domain;
                     Region: RWDD3_C; cd24164"
                     /db_xref="CDD:467815"
ORIGIN      
        1 tgttgagcca gccgagcggc gcggccatgg cggagctggt gcgggaggag ctctcggccc
       61 tgggtgcgat tttctgcggg cccggcgaat gggaagtgct gagttgctca gagacagatg
      121 ggactgtgtt cagaattctc acaagagccg aaggatttat ggatgcggat atacccttac
      181 gattggtgtt ccatttaccg gttaattacc cgtcgtgtct gcctggtatt gtggttaact
      241 ccgaacacct gaccagggct gagtgtgaga ttgtgaagga gaagttactg gagcaagcag
      301 agaccctttt gtcggaacct atggttcatg agctagttct ctggattcag cagaatctca
      361 ggcacatcct caagcggcca gaagctggag gtggcagtga aaagtgcact tctgcagcaa
      421 gcacgactgt ggatgatgga ttgtggatga ctcttttgca tttagatcat atgagagcaa
      481 agaccaaata tgtcaaaagt gtggagaagt gggcttccga tttaaggctg acaggaagac
      541 tgatgttcat gggtaaagta atactgattt tactgcaggg agacagaaac aacatcaagg
      601 agtacctgat tcttcagaaa acctgcaaag tagatgtgga ctcaagtgga aagaaatgca
      661 aagagaaaat gattagtgta ctgtttgaaa caaaagtaca gacagaacac aaaaggtttc
      721 tggcatttga agtcaaagag tattcatcgt tggatgagtt acaaaaggaa tttgaaactg
      781 caggacttaa gaagcttttc tccgaatttg tgcttaggct ggtaaaatga agtggaagac
      841 aggtatcttt tagtgaaaca acagcgtttt ttgttttgtt ttgtttttgt tttttcgttg
      901 gattttgaga gtggctgatt gaaatactca taagggaaca attttagagt tttctctgaa
      961 gcaaaatgac agacaccatc ataacttcag gacaaaaacc aattctgttt atggaatatt
     1021 aaacagtaaa aatatctatg tattctaatt ttgccagtat aggctgggtt caatagatgg
     1081 aatgttattt gagagataaa tacaaaaaga tgatggtgaa tgagcccttg tgtttctaca
     1141 gaggatttgt ttggaactgt gcaattttct ggctaatttt cttgtaatta aatgaatttt
     1201 taaaaagaga tttgttttca tgtttacttc cttcatgttt acatttttag catttgataa
     1261 tgattttttc ccccattcag attattctgt ctaatgtttt aagttgaatg ttaagaaaat
     1321 tataacactg atttcattgt ggaattggat aaatggttag tttaaataca aactaaagaa
     1381 gttcta
//
LOCUS       XM_032605564            1179 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 3 (RWDD3),
            transcript variant X2, mRNA.
ACCESSION   XM_032605564
VERSION     XM_032605564.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1179
                     /gene="RWDD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740189"
     CDS             12..809
                     /gene="RWDD3"
                     /codon_start=1
                     /product="RWD domain-containing protein 3 isoform X2"
                     /protein_id="XP_032461455.1"
                     /db_xref="GeneID:116740189"
                     /translation="MAELVREELSALGAIFCGPGEWEVLSCSDGTVFRILTRAEGFMD
                     ADIPLRLVFHLPVNYPSCLPGIVVNSEHLTRAECEIVKEKLLEQAETLLSEPMVHELV
                     LWIQQNLRHILKRPEAGGGSEKCTSAASTTVDDGLWMTLLHLDHMRAKTKYVKSVEKW
                     ASDLRLTGRLMFMGKVILILLQGDRNNIKEYLILQKTCKVDVDSSGKKCKEKMISVLF
                     ETKVQTEHKRFLAFEVKEYSSLDELQKEFETAGLKKLFSEFVLRLVK"
     misc_feature    30..341
                     /gene="RWDD3"
                     /note="RWD domain of RWD domain-containing protein 3
                     (RWDD3) and related proteins; Region: RWD_RWDD3; cd23819"
                     /db_xref="CDD:467655"
     misc_feature    order(30..32,39..41,51..56,297..299,306..308,318..320)
                     /gene="RWDD3"
                     /note="Ubc9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:467655"
     misc_feature    420..746
                     /gene="RWDD3"
                     /note="RWD domain-containing protein 3, C-terminal domain;
                     Region: RWDD3_C; cd24164"
                     /db_xref="CDD:467815"
ORIGIN      
        1 gcggcgcggc catggcggag ctggtgcggg aggagctctc ggccctgggt gcgattttct
       61 gcgggcccgg cgaatgggaa gtgctgagtt gctcagatgg gactgtgttc agaattctca
      121 caagagccga aggatttatg gatgcggata tacccttacg attggtgttc catttaccgg
      181 ttaattaccc gtcgtgtctg cctggtattg tggttaactc cgaacacctg accagggctg
      241 agtgtgagat tgtgaaggag aagttactgg agcaagcaga gacccttttg tcggaaccta
      301 tggttcatga gctagttctc tggattcagc agaatctcag gcacatcctc aagcggccag
      361 aagctggagg tggcagtgaa aagtgcactt ctgcagcaag cacgactgtg gatgatggat
      421 tgtggatgac tcttttgcat ttagatcata tgagagcaaa gaccaaatat gtcaaaagtg
      481 tggagaagtg ggcttccgat ttaaggctga caggaagact gatgttcatg ggtaaagtaa
      541 tactgatttt actgcaggga gacagaaaca acatcaagga gtacctgatt cttcagaaaa
      601 cctgcaaagt agatgtggac tcaagtggaa agaaatgcaa agagaaaatg attagtgtac
      661 tgtttgaaac aaaagtacag acagaacaca aaaggtttct ggcatttgaa gtcaaagagt
      721 attcatcgtt ggatgagtta caaaaggaat ttgaaactgc aggacttaag aagcttttct
      781 ccgaatttgt gcttaggctg gtaaaatgaa gtggaagaca ggtatctttt agtgaaacaa
      841 cagcgttttt tgttttgttt tgtttttgtt ttttcgttgg attttgagag tggctgattg
      901 aaatactcat aagggaacaa ttttagagtt ttctctgaag caaaatgaca gacaccatca
      961 taacttcagg acaaaaacca attctgttta tggaatatta aacagtaaaa atatctatgt
     1021 attctaattt tgccagtata ggctgggttc aatagatgga atgttatttg agagataaat
     1081 acaaaaagat gatggtgaat gagcccttgt gtttctacag aggatttgtt tggaactgtg
     1141 caattttctg gctaattttc ttgtaattaa atgaatttt
//
LOCUS       XM_032605572            1930 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 3 (RWDD3),
            transcript variant X3, mRNA.
ACCESSION   XM_032605572
VERSION     XM_032605572.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1930
                     /gene="RWDD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116740189"
     CDS             889..1560
                     /gene="RWDD3"
                     /codon_start=1
                     /product="RWD domain-containing protein 3 isoform X3"
                     /protein_id="XP_032461463.1"
                     /db_xref="GeneID:116740189"
                     /translation="MDADIPLRLVFHLPVNYPSCLPGIVVNSEHLTRAECEIVKEKLL
                     EQAETLLSEPMVHELVLWIQQNLRHILKRPEAGGGSEKCTSAASTTVDDGLWMTLLHL
                     DHMRAKTKYVKSVEKWASDLRLTGRLMFMGKVILILLQGDRNNIKEYLILQKTCKVDV
                     DSSGKKCKEKMISVLFETKVQTEHKRFLAFEVKEYSSLDELQKEFETAGLKKLFSEFV
                     LRLVK"
     misc_feature    <892..1092
                     /gene="RWDD3"
                     /note="RWD, DRWD, and ELF domain family; Region:
                     RWD_DRWD_ELF-like; cl45901"
                     /db_xref="CDD:480265"
     misc_feature    1171..1497
                     /gene="RWDD3"
                     /note="RWD domain-containing protein 3, C-terminal domain;
                     Region: RWDD3_C; cd24164"
                     /db_xref="CDD:467815"
ORIGIN      
        1 cgggaggagc tctcggccct gggtgcgatt ttctgcgggc ccggcgaatg ggaagtgctg
       61 agttgctcag aatgaatcag cctgacgttt taacaacttt tgaaaagtgg ggtgaagtgg
      121 tgtggaacac atcagagggg tgaagtggag caaatctgaa agagagcaga gtgtttcatc
      181 tcgtatcctg tgtgcgcttt cccctttccc cctcctcctt atggagccag aaacagctga
      241 actgatgtct gcccaatttt agttcctccc gctgccttca tgttacactg atacgaatat
      301 atttgaagtg aaaaagagcg ggtccaggca gttactgtgt atgcacagtc atggttttct
      361 ctgtacccct gcaaccacac gggatccagt atttagtttg aatcagactc actgcaacat
      421 gactttcacc agatttagtg tataactttt aaacgaatca ctgattttat aaatacacaa
      481 tactgtctct ttgaatgttc atatgaggtt attaggaatt tctgaattat caactaagtc
      541 tggggaggaa aaaaatcata tgatgagaaa cctttctggt aaccttaata aaaatgggat
      601 aatggcaatt ataaatgcca gtgaaatcct gggtgctggt gagcatgatt ctatgaatat
      661 atatgtatgg ctgaaagtaa tctgtaaatc atggctttct tagtgtgatg tatctcttca
      721 taaaataact tagttttcac atgaaaaata aattgacact tgaaacaaaa attttaactt
      781 gttagtgttc cattcaaatt gaattaggta cagctaatca ttatttttgg atgctttcca
      841 gagacagatg ggactgtgtt cagaattctc acaagagccg aaggatttat ggatgcggat
      901 atacccttac gattggtgtt ccatttaccg gttaattacc cgtcgtgtct gcctggtatt
      961 gtggttaact ccgaacacct gaccagggct gagtgtgaga ttgtgaagga gaagttactg
     1021 gagcaagcag agaccctttt gtcggaacct atggttcatg agctagttct ctggattcag
     1081 cagaatctca ggcacatcct caagcggcca gaagctggag gtggcagtga aaagtgcact
     1141 tctgcagcaa gcacgactgt ggatgatgga ttgtggatga ctcttttgca tttagatcat
     1201 atgagagcaa agaccaaata tgtcaaaagt gtggagaagt gggcttccga tttaaggctg
     1261 acaggaagac tgatgttcat gggtaaagta atactgattt tactgcaggg agacagaaac
     1321 aacatcaagg agtacctgat tcttcagaaa acctgcaaag tagatgtgga ctcaagtgga
     1381 aagaaatgca aagagaaaat gattagtgta ctgtttgaaa caaaagtaca gacagaacac
     1441 aaaaggtttc tggcatttga agtcaaagag tattcatcgt tggatgagtt acaaaaggaa
     1501 tttgaaactg caggacttaa gaagcttttc tccgaatttg tgcttaggct ggtaaaatga
     1561 agtggaagac aggtatcttt tagtgaaaca acagcgtttt ttgttttgtt ttgtttttgt
     1621 tttttcgttg gattttgaga gtggctgatt gaaatactca taagggaaca attttagagt
     1681 tttctctgaa gcaaaatgac agacaccatc ataacttcag gacaaaaacc aattctgttt
     1741 atggaatatt aaacagtaaa aatatctatg tattctaatt ttgccagtat aggctgggtt
     1801 caatagatgg aatgttattt gagagataaa tacaaaaaga tgatggtgaa tgagcccttg
     1861 tgtttctaca gaggatttgt ttggaactgt gcaattttct ggctaatttt cttgtaatta
     1921 aatgaatttt
//
LOCUS       XM_032605581            1209 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 3 (RWDD3),
            transcript variant X4, mRNA.
ACCESSION   XM_032605581
VERSION     XM_032605581.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1209
                     /gene="RWDD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116740189"
     CDS             168..839
                     /gene="RWDD3"
                     /codon_start=1
                     /product="RWD domain-containing protein 3 isoform X3"
                     /protein_id="XP_032461472.1"
                     /db_xref="GeneID:116740189"
                     /translation="MDADIPLRLVFHLPVNYPSCLPGIVVNSEHLTRAECEIVKEKLL
                     EQAETLLSEPMVHELVLWIQQNLRHILKRPEAGGGSEKCTSAASTTVDDGLWMTLLHL
                     DHMRAKTKYVKSVEKWASDLRLTGRLMFMGKVILILLQGDRNNIKEYLILQKTCKVDV
                     DSSGKKCKEKMISVLFETKVQTEHKRFLAFEVKEYSSLDELQKEFETAGLKKLFSEFV
                     LRLVK"
     misc_feature    <171..371
                     /gene="RWDD3"
                     /note="RWD, DRWD, and ELF domain family; Region:
                     RWD_DRWD_ELF-like; cl45901"
                     /db_xref="CDD:480265"
     misc_feature    450..776
                     /gene="RWDD3"
                     /note="RWD domain-containing protein 3, C-terminal domain;
                     Region: RWDD3_C; cd24164"
                     /db_xref="CDD:467815"
ORIGIN      
        1 aaaactccag gaacctacga cagtgccagg cacgtgctgt aacataaaaa gaagcactgg
       61 tggatgtata cttgtgggga gccacctggg agcgagagga aaaaaatcct gtgcagtgag
      121 agacagatgg gactgtgttc agaattctca caagagccga aggatttatg gatgcggata
      181 tacccttacg attggtgttc catttaccgg ttaattaccc gtcgtgtctg cctggtattg
      241 tggttaactc cgaacacctg accagggctg agtgtgagat tgtgaaggag aagttactgg
      301 agcaagcaga gacccttttg tcggaaccta tggttcatga gctagttctc tggattcagc
      361 agaatctcag gcacatcctc aagcggccag aagctggagg tggcagtgaa aagtgcactt
      421 ctgcagcaag cacgactgtg gatgatggat tgtggatgac tcttttgcat ttagatcata
      481 tgagagcaaa gaccaaatat gtcaaaagtg tggagaagtg ggcttccgat ttaaggctga
      541 caggaagact gatgttcatg ggtaaagtaa tactgatttt actgcaggga gacagaaaca
      601 acatcaagga gtacctgatt cttcagaaaa cctgcaaagt agatgtggac tcaagtggaa
      661 agaaatgcaa agagaaaatg attagtgtac tgtttgaaac aaaagtacag acagaacaca
      721 aaaggtttct ggcatttgaa gtcaaagagt attcatcgtt ggatgagtta caaaaggaat
      781 ttgaaactgc aggacttaag aagcttttct ccgaatttgt gcttaggctg gtaaaatgaa
      841 gtggaagaca ggtatctttt agtgaaacaa cagcgttttt tgttttgttt tgtttttgtt
      901 ttttcgttgg attttgagag tggctgattg aaatactcat aagggaacaa ttttagagtt
      961 ttctctgaag caaaatgaca gacaccatca taacttcagg acaaaaacca attctgttta
     1021 tggaatatta aacagtaaaa atatctatgt attctaattt tgccagtata ggctgggttc
     1081 aatagatgga atgttatttg agagataaat acaaaaagat gatggtgaat gagcccttgt
     1141 gtttctacag aggatttgtt tggaactgtg caattttctg gctaattttc ttgtaattaa
     1201 atgaatttt
//
LOCUS       XM_032605589            1163 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 3 (RWDD3),
            transcript variant X5, mRNA.
ACCESSION   XM_032605589
VERSION     XM_032605589.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1163
                     /gene="RWDD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116740189"
     CDS             122..793
                     /gene="RWDD3"
                     /codon_start=1
                     /product="RWD domain-containing protein 3 isoform X3"
                     /protein_id="XP_032461480.1"
                     /db_xref="GeneID:116740189"
                     /translation="MDADIPLRLVFHLPVNYPSCLPGIVVNSEHLTRAECEIVKEKLL
                     EQAETLLSEPMVHELVLWIQQNLRHILKRPEAGGGSEKCTSAASTTVDDGLWMTLLHL
                     DHMRAKTKYVKSVEKWASDLRLTGRLMFMGKVILILLQGDRNNIKEYLILQKTCKVDV
                     DSSGKKCKEKMISVLFETKVQTEHKRFLAFEVKEYSSLDELQKEFETAGLKKLFSEFV
                     LRLVK"
     misc_feature    <125..325
                     /gene="RWDD3"
                     /note="RWD, DRWD, and ELF domain family; Region:
                     RWD_DRWD_ELF-like; cl45901"
                     /db_xref="CDD:480265"
     misc_feature    404..730
                     /gene="RWDD3"
                     /note="RWD domain-containing protein 3, C-terminal domain;
                     Region: RWDD3_C; cd24164"
                     /db_xref="CDD:467815"
ORIGIN      
        1 ttgcaggagg gcaggaaccc tgtacgtttt gtaatcacaa aactccagga acctacgaca
       61 gtgccaggca cgtgagacag atgggactgt gttcagaatt ctcacaagag ccgaaggatt
      121 tatggatgcg gatataccct tacgattggt gttccattta ccggttaatt acccgtcgtg
      181 tctgcctggt attgtggtta actccgaaca cctgaccagg gctgagtgtg agattgtgaa
      241 ggagaagtta ctggagcaag cagagaccct tttgtcggaa cctatggttc atgagctagt
      301 tctctggatt cagcagaatc tcaggcacat cctcaagcgg ccagaagctg gaggtggcag
      361 tgaaaagtgc acttctgcag caagcacgac tgtggatgat ggattgtgga tgactctttt
      421 gcatttagat catatgagag caaagaccaa atatgtcaaa agtgtggaga agtgggcttc
      481 cgatttaagg ctgacaggaa gactgatgtt catgggtaaa gtaatactga ttttactgca
      541 gggagacaga aacaacatca aggagtacct gattcttcag aaaacctgca aagtagatgt
      601 ggactcaagt ggaaagaaat gcaaagagaa aatgattagt gtactgtttg aaacaaaagt
      661 acagacagaa cacaaaaggt ttctggcatt tgaagtcaaa gagtattcat cgttggatga
      721 gttacaaaag gaatttgaaa ctgcaggact taagaagctt ttctccgaat ttgtgcttag
      781 gctggtaaaa tgaagtggaa gacaggtatc ttttagtgaa acaacagcgt tttttgtttt
      841 gttttgtttt tgttttttcg ttggattttg agagtggctg attgaaatac tcataaggga
      901 acaattttag agttttctct gaagcaaaat gacagacacc atcataactt caggacaaaa
      961 accaattctg tttatggaat attaaacagt aaaaatatct atgtattcta attttgccag
     1021 tataggctgg gttcaataga tggaatgtta tttgagagat aaatacaaaa agatgatggt
     1081 gaatgagccc ttgtgtttct acagaggatt tgtttggaac tgtgcaattt tctggctaat
     1141 tttcttgtaa ttaaatgaat ttt
//
LOCUS       XM_032605598            1204 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 3 (RWDD3),
            transcript variant X6, mRNA.
ACCESSION   XM_032605598
VERSION     XM_032605598.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1204
                     /gene="RWDD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 3
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740189"
     CDS             72..674
                     /gene="RWDD3"
                     /codon_start=1
                     /product="RWD domain-containing protein 3 isoform X4"
                     /protein_id="XP_032461489.1"
                     /db_xref="GeneID:116740189"
                     /translation="MAELVREELSALGAIFCGPGEWEVLSCSETDGTVFRILTRAEGF
                     MDADIPLRLVFHLPVNYPSCLPGIVVNSEHLTRAECEIVKEKLLEQAETLLSEPMVHE
                     LVLWIQQNLRHILKRPEAGGGSEKCTSAASTTVDDGLWMTLLHLDHMRAKTKYVKSVE
                     KWASDLRLTGRLMFMGVPDSSENLQSRCGLKWKEMQREND"
     misc_feature    90..407
                     /gene="RWDD3"
                     /note="RWD domain of RWD domain-containing protein 3
                     (RWDD3) and related proteins; Region: RWD_RWDD3; cd23819"
                     /db_xref="CDD:467655"
     misc_feature    order(90..92,99..101,111..116,363..365,372..374,384..386)
                     /gene="RWDD3"
                     /note="Ubc9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:467655"
     misc_feature    486..>599
                     /gene="RWDD3"
                     /note="C-terminal domain of Prp3 and related proteins;
                     Region: Prp3_C-like; cl49625"
                     /db_xref="CDD:483965"
ORIGIN      
        1 gctcggggcc ggcgggggcg gcggcggcgg cggcggaagg ggaggtgttg agccagccga
       61 gcggcgcggc catggcggag ctggtgcggg aggagctctc ggccctgggt gcgattttct
      121 gcgggcccgg cgaatgggaa gtgctgagtt gctcagagac agatgggact gtgttcagaa
      181 ttctcacaag agccgaagga tttatggatg cggatatacc cttacgattg gtgttccatt
      241 taccggttaa ttacccgtcg tgtctgcctg gtattgtggt taactccgaa cacctgacca
      301 gggctgagtg tgagattgtg aaggagaagt tactggagca agcagagacc cttttgtcgg
      361 aacctatggt tcatgagcta gttctctgga ttcagcagaa tctcaggcac atcctcaagc
      421 ggccagaagc tggaggtggc agtgaaaagt gcacttctgc agcaagcacg actgtggatg
      481 atggattgtg gatgactctt ttgcatttag atcatatgag agcaaagacc aaatatgtca
      541 aaagtgtgga gaagtgggct tccgatttaa ggctgacagg aagactgatg ttcatgggag
      601 tacctgattc ttcagaaaac ctgcaaagta gatgtggact caagtggaaa gaaatgcaaa
      661 gagaaaatga ttagtgtact gtttgaaaca aaagtacaga cagaacacaa aaggtttctg
      721 gcatttgaag tcaaagagta ttcatcgttg gatgagttac aaaaggaatt tgaaactgca
      781 ggacttaaga agcttttctc cgaatttgtg cttaggctgg taaaatgaag tggaagacag
      841 gtatctttta gtgaaacaac agcgtttttt gttttgtttt gtttttgttt tttcgttgga
      901 ttttgagagt ggctgattga aatactcata agggaacaat tttagagttt tctctgaagc
      961 aaaatgacag acaccatcat aacttcagga caaaaaccaa ttctgtttat ggaatattaa
     1021 acagtaaaaa tatctatgta ttctaatttt gccagtatag gctgggttca atagatggaa
     1081 tgttatttga gagataaata caaaaagatg atggtgaatg agcccttgtg tttctacaga
     1141 ggatttgttt ggaactgtgc aattttctgg ctaattttct tgtaattaaa tgaattttta
     1201 aaaa
//
LOCUS       XM_032605610            4104 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vasohibin 2 (VASH2), mRNA.
ACCESSION   XM_032605610
VERSION     XM_032605610.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4104
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4104
                     /gene="VASH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740213"
     CDS             253..1320
                     /gene="VASH2"
                     /codon_start=1
                     /product="tubulinyl-Tyr carboxypeptidase 2"
                     /protein_id="XP_032461501.1"
                     /db_xref="GeneID:116740213"
                     /translation="MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKD
                     GGVLFHVNKSGFPIDSHTWERMWMHVAKVHPKGGEMVGAIRNATFLAKPSVPQVPNYR
                     LSMTIPEWLQAVQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLPIKCLE
                     AVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGRYGSLGMSRRAELMDK
                     PLTFRTLSDLIFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLR
                     ADIRKELEKYARDMRMKLLKPASAHSPTQARSRGKSLSPRRRQASPPRRLGRQDKSPA
                     LPEKKVADLSTLNEVGYQIRI"
     misc_feature    391..1125
                     /gene="VASH2"
                     /note="Region: Vasohibin; pfam14822"
                     /db_xref="CDD:434242"
ORIGIN      
        1 gggacatgga atgaggcgac ggccgcagcg gccccagcag ctcccgccac ccccgccacc
       61 cggagaagcc gtgcagccat gaggccgacc gtccagaggc acggcccgta agcggagttc
      121 cagccgccgc tgccccttcg cgcgtcctgc ggcagccaga agcatggaga aggccgcccc
      181 cgcggggcgc tgatacccgt gccgcgcccg cgcgcacacg cccctcgccg ccctccccgc
      241 ccctgcccca ccatgaccgg ctcggcggcc gacactcacc gctgccccca ccccaaaggc
      301 gccaaaggca cccggtcccg gagcagccac gcgcggcccg tgagcctcgc tactagcggg
      361 ggctctgagg aggaggacaa agacggcggg gtgctgtttc acgttaacaa gagcggcttc
      421 cccatcgaca gccacacctg ggagcgcatg tggatgcacg tggccaaagt gcaccccaag
      481 gggggagaaa tggtgggcgc catcaggaac gccaccttct tagcaaagcc ttcggtaccc
      541 caggttccca actacaggct gtcgatgacg atcccagagt ggctccaggc agtccagaac
      601 tacatgaaga cactacaata caatcataca gggacccagt tctttgaaat taggaaaatg
      661 agaccgctga gtgggttaat ggaaacagcg aaagaaatga ctcgggagtc cttgcctatc
      721 aaatgccttg aagctgtcat cctgggcata tacttaacca atggacagcc ttccatcgag
      781 cgattcccca tcagctttaa aacctacttc tcaggaaact actttcacca tgttgtgctg
      841 gggatttact gcaatggccg ctatggctca ctgggcatga gccggagggc tgagctgatg
      901 gacaagccat tgacctttcg gactctgagt gacctcatct ttgacttcga agactcctac
      961 aagaaatatc ttcacacagt caagaaggtc aagattgggt tgtatgtccc ccatgagcct
     1021 catagcttcc agcccatcga gtggaagcag ctggtcctca atgtctcgaa gatgttgagg
     1081 gctgacataa ggaaggagct ggagaaatat gccagggaca tgagaatgaa gctcctgaaa
     1141 cctgcaagtg cccactctcc aacccaagcg agaagccggg gaaaatcact gtccccccga
     1201 cggaggcagg cgagcccccc aagacggctc ggcaggcaag acaagtcgcc tgcactgcct
     1261 gaaaagaagg tggctgatct cagcactctg aatgaagtgg gctatcaaat ccgaatttag
     1321 gccagcaata cagccagcaa cagggcttct atggtgcttc tgtctgcact ttacccagca
     1381 tcttcaggag gaactgcaac tatttattaa gaacttgtgg attttatttg taagggttca
     1441 cttggaatag actctgagtg ggtggtaaca atgaacttta aaaaaattca cgaagggaca
     1501 accatgaaaa ggctaagtaa taaatcccac tgcggtcaga ctgtctccct cactccagaa
     1561 agaaaggata agaccgtaac tgtagtttta tattttccca tttacctaca ttcttttact
     1621 tgttttaaac agcagtagta aatgttcatg aaaccctccc tcccactttt gatatagtaa
     1681 ggtaaactca atcagtatta atgtcttttt cagcaataac agcggcaaag attggtgggg
     1741 tctttttgta agcagtcaat attacctcag catcttgaca tcagatatgc aaatttaatg
     1801 gtgttttgtt tttttatatt ctatttgtat tgtttcccca gtattttcca tggggatctc
     1861 cacaaggtct ggaatttttt tcctggtgca cacatgcgat gaaacttaag gtattatata
     1921 tgcaagtgtt ttactagaaa agcactgaaa ttcttctggc aatacgggaa accattttca
     1981 ggaccttgga gttacttctt tcttaaatct ttcttaaagc attcactgac agcagttttt
     2041 gttctttcaa aacaaaagca cgttcggaag ctagtctatg ttctgtcact aacatttaaa
     2101 ctttgcagag tccagcaaaa agcacacagg gtcatgaact gttacacaaa tttagcagta
     2161 ttgcaattac ctctgacagt aacacactca aaggcacagg ccaggagtga atcagtaggt
     2221 cttgagaacc agctaacctt gctgatccca tttcacctga tttcgaaact cctcgattct
     2281 gaaggactca ctgttgttag agatgtgttc tgatgtctta tattaagacc aaatacaaca
     2341 cgatgtgatt attttccagt accttgcttt taggtaccac ttcaggatgc ttaggaactg
     2401 gtattggaga atacaatgaa ttagagaagc agaaccttag ttttaatgga aaagtcttca
     2461 ggtacagtgt tacaccttat agtgtgattt agtccacgga gcacagtatg aatatccggc
     2521 ctgcatatgg tagttacagt gtaacttctg gctgcagacc acaaagaata actctaacag
     2581 cataccaagt ctgtatgtta tcaagagtac agcttccgtt tcatttgttt gatcttagca
     2641 accatgccaa ctcatgagac cagcaggcat atttaagtga agtctgctag tcaacaaaag
     2701 tgttatttca gtctcagtgc ttacccctct ggttttcttt gactgaagtg tacatctcag
     2761 ttagattaaa atacagcgta agttaaaaat tcggaactta accactttcc tcaagaatag
     2821 tactatcagt tagcagaatt taaaatgagt tatccttaat cttcacaaga ggaacccatt
     2881 tgcagcctca tggccacttg tatttggatg tttgcagtcg ccagtgaatc gtttcattct
     2941 cattctaaaa caatactgac ctagctctct ctctagatga aataccatca tctgtttatc
     3001 aatctgaaaa tactatatcc aataagtaga ctacttataa cattgcaatc attctaagag
     3061 cttggaatag gattttccaa gtattaagta ctgtccaatc taaaatatgg aatgtcaaga
     3121 gttgcatagc ctcttgtttc ccacagaaaa ggggaaagga ataggaatac aacctgtttc
     3181 taatatgctg atgtataagc cttaaaactg ccaactggct tgatgattca attagtaacc
     3241 tgatttattc cacactcatt tcttgatttt aagattcatt tccccaaagc aagagttagt
     3301 cacagaaaca tgaaaattaa tttaaaatgt tcttggttgt tattctattt ttattgccta
     3361 tggagtatgt taatttctaa aagatatgag aaaggcaaca aactcctaca ttctagtgaa
     3421 gtaatttaat tgataaggca aggaaaaaaa aaaagacagg atttaccccc tagaactgat
     3481 tttaaaactg gctataattc aaaagataaa aaaacaaaac tatgaagtga tctgaaatct
     3541 agtttttaaa gttattaacg caagagaaat tttatgctta agccattatg gcaatacgtg
     3601 caaagtttaa atgaatgaca gaaagtttga ttctagacta catgttgtgc tgttttgagt
     3661 acactttatt tcagaaagtg gtattcagtg ttttctatac actctgaaat catgagcatt
     3721 tcactttttc taagtcaatt atttcataag gattttatta atagaaattg gtaaatagaa
     3781 ctttggaaat cttaattcag tattcttact atacccgagg cttttgtaag ctatagtttt
     3841 atgtacaacc ttgtacagtt tttttgacat gcaattcaga atcttgttta ttctttggac
     3901 tttgttctgg ccaacacatt tttttaaaat cttttaagaa aaactgtgat tgttttagtg
     3961 ggtatttttc taagtaaatg aaaacttgta taatggtatt ttagagaatg ccaggtaagt
     4021 gcatgtttca agttaatgtt tttctcatca cttgtatgtt tatacacagc atgggacttt
     4081 aataaaacca tcctggaaac tcaa
//
LOCUS       XM_032605620            2133 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 2 member 5
            (SLC2A5), transcript variant X1, mRNA.
ACCESSION   XM_032605620
VERSION     XM_032605620.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2133
                     /gene="SLC2A5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 25 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740221"
     CDS             61..1566
                     /gene="SLC2A5"
                     /codon_start=1
                     /product="solute carrier family 2, facilitated glucose
                     transporter member 5 isoform X1"
                     /protein_id="XP_032461511.1"
                     /db_xref="GeneID:116740221"
                     /translation="MEQQDAVRREGRLTPVLALATLIAAFGSSFQYGYNVAAINSPAK
                     LMKAFYNETYYDRTGEHISEFSLTLLWSVSVSMFPFGGFLGSLMVGPLVNKLGRKGTL
                     LFNNIFSIVPAILMGCSEVAKSFEMIIVARLLVGICAGLSSNVVPMYLGELAPKNLRG
                     ALGVVPQLFITVGILAAQILGLRSLLANEEGWPILLGVTGIPAAVQLLLLPFFPESPR
                     YLLIQKKDEAAAKNALRELRGWDDVDAETQEIWEEDRAEKAAGFISVLKLLRMRSLRW
                     QVISIVVLMGGQQLSGVNAIYYYADQIYLSAGVRAQDVQYVTAGTGAVNMLMTICAVF
                     VVELLGRRVLLLLGFSICFTACCVLTAALALQDTVSWMPYVSIACIISYVIGHALGPS
                     PIPALLITEIFLQSSRPAAYMVGGSVHWLSNFTVGLIFPFIQVGLGAYSFIIFAMICV
                     LTTIYTFLVVPETKSKTFIEINEIFTKMNEVSEVHPEKEELKDFPPSTTGQ"
     misc_feature    118..1473
                     /gene="SLC2A5"
                     /note="Class 2 Glucose transporters (GLUTs) of the Major
                     Facilitator Superfamily; Region: MFS_GLUT_Class2; cd17432"
                     /db_xref="CDD:340990"
     misc_feature    order(154..156,166..168,559..561,568..573,580..582,
                     922..927,937..942,949..954,1033..1035,1219..1224,
                     1231..1236,1246..1248,1315..1320,1327..1329)
                     /gene="SLC2A5"
                     /note="chemical substrate binding pocket [chemical
                     binding]; other site"
                     /db_xref="CDD:340990"
ORIGIN      
        1 agtgcatttg ttattttggc tgaaaggaaa taagcaggac cctgcgcttc cagagcaaag
       61 atggagcaac aggacgcagt caggagggaa gggaggctga caccagtgct tgctctggcg
      121 acgctgatag ccgcctttgg gtcatccttc cagtatgggt acaacgtggc tgctattaac
      181 tcccccgcca agctcatgaa agcattttat aacgagacct actatgacag aaccggtgaa
      241 cacataagcg aattttcctt gaccttgctg tggtcggttt ctgtgtccat gtttcccttt
      301 ggaggcttcc tcggctccct catggtcggc cccttggtga ataaattagg cagaaaagga
      361 accttgctgt tcaacaacat cttttccatc gtgcctgcga tcttaatggg atgcagtgaa
      421 gttgccaagt catttgagat gataattgtg gccagacttt tggtgggaat atgtgcaggt
      481 ctgtcttcca atgtcgtccc tatgtactta ggggagctgg cccctaagaa cctgcggggg
      541 gccctggggg tggtgcccca gctcttcatc accgtcggca tcctcgcggc ccagatcttg
      601 ggtcttcgga gtctcctcgc aaacgaagaa ggctggccca tcctcctcgg cgtgaccggg
      661 atccccgcgg cagtgcagct ccttctgttg cccttcttcc ccgagagccc caggtacctg
      721 ctcattcaga agaaagatga agcggctgcc aaaaacgcgc tgagggaact gcgcggctgg
      781 gacgacgtgg acgccgagac acaggagatc tgggaggaag acagggccga gaaggccgcc
      841 ggcttcatct ccgtgctgaa gctgctgaga atgaggtccc tgcggtggca ggtcatctcc
      901 atcgtcgtcc tcatgggcgg ccagcagctg tcgggagtga acgcgatcta ctactacgca
      961 gaccagatct acctgagcgc tggggtgagg gcacaggatg tccagtatgt gacggcgggc
     1021 acaggcgcgg tcaacatgct gatgaccatc tgcgccgttt tcgtggtgga gctcctgggg
     1081 aggagagtcc tgctcctcct aggcttctcc atctgcttca ccgcctgctg cgtgctgact
     1141 gccgccctgg ctctgcagga cacagtatcc tggatgccct acgtcagcat cgcctgcatc
     1201 atctcctatg tcataggaca tgcccttggg cccagtccta tccccgcact gctcatcacc
     1261 gagatcttcc tgcagtcctc ccggccggcc gcctacatgg tggggggcag tgtccactgg
     1321 ctctccaact tcactgtggg cttgatcttc ccattcattc aagtgggcct cggagcttac
     1381 agctttatca tttttgccat gatatgtgtt ctcaccacca tctacacctt cctggttgtc
     1441 cccgagacca agtccaagac cttcatagaa atcaatgaga tcttcaccaa gatgaacgaa
     1501 gtgtcagagg tgcacccaga aaaggaggag ctaaaggact ttccaccctc tactacgggg
     1561 cagtaactcg agaggaggag cctgtgaatc aggtctgcgt ggagcttccc tcctgggcta
     1621 tgaatccaga actaggacaa gtccggtgtg gaaggcaggc cctgatgaga ctgtcgtaag
     1681 ggcttctgtg cagttcttaa agccaggctg tctctttcca ggttgaccca tcaccaaccc
     1741 caaggcacgc cgggcagctg tccctcagcc atgctgggtc agccattgtg tggctcctgg
     1801 caacaccggc tcttataatg aaagccatta ccgtggtgtt gagatggaag gaatcaaacg
     1861 cggccaaaga aactagttct tctccaatcc cgtagtcttc cgggggccac gggcccgtgt
     1921 tcagggtgga atccatcctc ttgtcagatc catctccaga aacactagtt ttgaaaagta
     1981 tgatgtcgtg agtgatgaag tctaggaatc tgggaggcag gtccctgtgg agactctaac
     2041 caagtcagag attattgttc ccagattata ttattagagg acaataggat tgcctctata
     2101 tatactcaat aaaacaaata tgatcacttt tca
//
LOCUS       XM_032605628            1997 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 2 member 5
            (SLC2A5), transcript variant X2, mRNA.
ACCESSION   XM_032605628
VERSION     XM_032605628.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1997
                     /gene="SLC2A5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 25 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740221"
     CDS             54..1559
                     /gene="SLC2A5"
                     /codon_start=1
                     /product="solute carrier family 2, facilitated glucose
                     transporter member 5 isoform X1"
                     /protein_id="XP_032461519.1"
                     /db_xref="GeneID:116740221"
                     /translation="MEQQDAVRREGRLTPVLALATLIAAFGSSFQYGYNVAAINSPAK
                     LMKAFYNETYYDRTGEHISEFSLTLLWSVSVSMFPFGGFLGSLMVGPLVNKLGRKGTL
                     LFNNIFSIVPAILMGCSEVAKSFEMIIVARLLVGICAGLSSNVVPMYLGELAPKNLRG
                     ALGVVPQLFITVGILAAQILGLRSLLANEEGWPILLGVTGIPAAVQLLLLPFFPESPR
                     YLLIQKKDEAAAKNALRELRGWDDVDAETQEIWEEDRAEKAAGFISVLKLLRMRSLRW
                     QVISIVVLMGGQQLSGVNAIYYYADQIYLSAGVRAQDVQYVTAGTGAVNMLMTICAVF
                     VVELLGRRVLLLLGFSICFTACCVLTAALALQDTVSWMPYVSIACIISYVIGHALGPS
                     PIPALLITEIFLQSSRPAAYMVGGSVHWLSNFTVGLIFPFIQVGLGAYSFIIFAMICV
                     LTTIYTFLVVPETKSKTFIEINEIFTKMNEVSEVHPEKEELKDFPPSTTGQ"
     misc_feature    111..1466
                     /gene="SLC2A5"
                     /note="Class 2 Glucose transporters (GLUTs) of the Major
                     Facilitator Superfamily; Region: MFS_GLUT_Class2; cd17432"
                     /db_xref="CDD:340990"
     misc_feature    order(147..149,159..161,552..554,561..566,573..575,
                     915..920,930..935,942..947,1026..1028,1212..1217,
                     1224..1229,1239..1241,1308..1313,1320..1322)
                     /gene="SLC2A5"
                     /note="chemical substrate binding pocket [chemical
                     binding]; other site"
                     /db_xref="CDD:340990"
ORIGIN      
        1 ttgttatttt ggctgaaagg aaataagcag gaccctgcgc ttccagagca aagatggagc
       61 aacaggacgc agtcaggagg gaagggaggc tgacaccagt gcttgctctg gcgacgctga
      121 tagccgcctt tgggtcatcc ttccagtatg ggtacaacgt ggctgctatt aactcccccg
      181 ccaagctcat gaaagcattt tataacgaga cctactatga cagaaccggt gaacacataa
      241 gcgaattttc cttgaccttg ctgtggtcgg tttctgtgtc catgtttccc tttggaggct
      301 tcctcggctc cctcatggtc ggccccttgg tgaataaatt aggcagaaaa ggaaccttgc
      361 tgttcaacaa catcttttcc atcgtgcctg cgatcttaat gggatgcagt gaagttgcca
      421 agtcatttga gatgataatt gtggccagac ttttggtggg aatatgtgca ggtctgtctt
      481 ccaatgtcgt ccctatgtac ttaggggagc tggcccctaa gaacctgcgg ggggccctgg
      541 gggtggtgcc ccagctcttc atcaccgtcg gcatcctcgc ggcccagatc ttgggtcttc
      601 ggagtctcct cgcaaacgaa gaaggctggc ccatcctcct cggcgtgacc gggatccccg
      661 cggcagtgca gctccttctg ttgcccttct tccccgagag ccccaggtac ctgctcattc
      721 agaagaaaga tgaagcggct gccaaaaacg cgctgaggga actgcgcggc tgggacgacg
      781 tggacgccga gacacaggag atctgggagg aagacagggc cgagaaggcc gccggcttca
      841 tctccgtgct gaagctgctg agaatgaggt ccctgcggtg gcaggtcatc tccatcgtcg
      901 tcctcatggg cggccagcag ctgtcgggag tgaacgcgat ctactactac gcagaccaga
      961 tctacctgag cgctggggtg agggcacagg atgtccagta tgtgacggcg ggcacaggcg
     1021 cggtcaacat gctgatgacc atctgcgccg ttttcgtggt ggagctcctg gggaggagag
     1081 tcctgctcct cctaggcttc tccatctgct tcaccgcctg ctgcgtgctg actgccgccc
     1141 tggctctgca ggacacagta tcctggatgc cctacgtcag catcgcctgc atcatctcct
     1201 atgtcatagg acatgccctt gggcccagtc ctatccccgc actgctcatc accgagatct
     1261 tcctgcagtc ctcccggccg gccgcctaca tggtgggggg cagtgtccac tggctctcca
     1321 acttcactgt gggcttgatc ttcccattca ttcaagtggg cctcggagct tacagcttta
     1381 tcatttttgc catgatatgt gttctcacca ccatctacac cttcctggtt gtccccgaga
     1441 ccaagtccaa gaccttcata gaaatcaatg agatcttcac caagatgaac gaagtgtcag
     1501 aggtgcaccc agaaaaggag gagctaaagg actttccacc ctctactacg gggcagtaac
     1561 tcgagaggag gagcctgtga atcaggttga cccatcacca accccaaggc acgccgggca
     1621 gctgtccctc agccatgctg ggtcagccat tgtgtggctc ctggcaacac cggctcttat
     1681 aatgaaagcc attaccgtgg tgttgagatg gaaggaatca aacgcggcca aagaaactag
     1741 ttcttctcca atcccgtagt cttccggggg ccacgggccc gtgttcaggg tggaatccat
     1801 cctcttgtca gatccatctc cagaaacact agttttgaaa agtatgatgt cgtgagtgat
     1861 gaagtctagg aatctgggag gcaggtccct gtggagactc taaccaagtc agagattatt
     1921 gttcccagat tatattatta gaggacaata ggattgcctc tatatatact caataaaaca
     1981 aatatgatca cttttca
//
LOCUS       XM_032605638            1843 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 2 member 5
            (SLC2A5), transcript variant X3, mRNA.
ACCESSION   XM_032605638
VERSION     XM_032605638.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1843
                     /gene="SLC2A5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740221"
     CDS             116..1276
                     /gene="SLC2A5"
                     /codon_start=1
                     /product="solute carrier family 2, facilitated glucose
                     transporter member 5 isoform X2"
                     /protein_id="XP_032461529.1"
                     /db_xref="GeneID:116740221"
                     /translation="MGCSEVAKSFEMIIVARLLVGICAGLSSNVVPMYLGELAPKNLR
                     GALGVVPQLFITVGILAAQILGLRSLLANEEGWPILLGVTGIPAAVQLLLLPFFPESP
                     RYLLIQKKDEAAAKNALRELRGWDDVDAETQEIWEEDRAEKAAGFISVLKLLRMRSLR
                     WQVISIVVLMGGQQLSGVNAIYYYADQIYLSAGVRAQDVQYVTAGTGAVNMLMTICAV
                     FVVELLGRRVLLLLGFSICFTACCVLTAALALQDTVSWMPYVSIACIISYVIGHALGP
                     SPIPALLITEIFLQSSRPAAYMVGGSVHWLSNFTVGLIFPFIQVGLGAYSFIIFAMIC
                     VLTTIYTFLVVPETKSKTFIEINEIFTKMNEVSEVHPEKEELKDFPPSTTGQ"
     misc_feature    <116..1183
                     /gene="SLC2A5"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:475125"
     misc_feature    order(185..190,194..202,209..211,269..271,278..283,
                     290..292,623..625,632..637,644..652,659..661,743..745,
                     755..757,929..934,944..946,956..958,1004..1006,1013..1018,
                     1025..1030,1037..1039)
                     /gene="SLC2A5"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:349949"
ORIGIN      
        1 taagcaggac cctgcgcttc cagagcaaag atggagcaac aggacgcagt caggagggaa
       61 gggaaaagga accttgctgt tcaacaacat cttttccatc gtgcctgcga tcttaatggg
      121 atgcagtgaa gttgccaagt catttgagat gataattgtg gccagacttt tggtgggaat
      181 atgtgcaggt ctgtcttcca atgtcgtccc tatgtactta ggggagctgg cccctaagaa
      241 cctgcggggg gccctggggg tggtgcccca gctcttcatc accgtcggca tcctcgcggc
      301 ccagatcttg ggtcttcgga gtctcctcgc aaacgaagaa ggctggccca tcctcctcgg
      361 cgtgaccggg atccccgcgg cagtgcagct ccttctgttg cccttcttcc ccgagagccc
      421 caggtacctg ctcattcaga agaaagatga agcggctgcc aaaaacgcgc tgagggaact
      481 gcgcggctgg gacgacgtgg acgccgagac acaggagatc tgggaggaag acagggccga
      541 gaaggccgcc ggcttcatct ccgtgctgaa gctgctgaga atgaggtccc tgcggtggca
      601 ggtcatctcc atcgtcgtcc tcatgggcgg ccagcagctg tcgggagtga acgcgatcta
      661 ctactacgca gaccagatct acctgagcgc tggggtgagg gcacaggatg tccagtatgt
      721 gacggcgggc acaggcgcgg tcaacatgct gatgaccatc tgcgccgttt tcgtggtgga
      781 gctcctgggg aggagagtcc tgctcctcct aggcttctcc atctgcttca ccgcctgctg
      841 cgtgctgact gccgccctgg ctctgcagga cacagtatcc tggatgccct acgtcagcat
      901 cgcctgcatc atctcctatg tcataggaca tgcccttggg cccagtccta tccccgcact
      961 gctcatcacc gagatcttcc tgcagtcctc ccggccggcc gcctacatgg tggggggcag
     1021 tgtccactgg ctctccaact tcactgtggg cttgatcttc ccattcattc aagtgggcct
     1081 cggagcttac agctttatca tttttgccat gatatgtgtt ctcaccacca tctacacctt
     1141 cctggttgtc cccgagacca agtccaagac cttcatagaa atcaatgaga tcttcaccaa
     1201 gatgaacgaa gtgtcagagg tgcacccaga aaaggaggag ctaaaggact ttccaccctc
     1261 tactacgggg cagtaactcg agaggaggag cctgtgaatc aggtctgcgt ggagcttccc
     1321 tcctgggcta tgaatccaga actaggacaa gtccggtgtg gaaggcaggc cctgatgaga
     1381 ctgtcgtaag ggcttctgtg cagttcttaa agccaggctg tctctttcca ggttgaccca
     1441 tcaccaaccc caaggcacgc cgggcagctg tccctcagcc atgctgggtc agccattgtg
     1501 tggctcctgg caacaccggc tcttataatg aaagccatta ccgtggtgtt gagatggaag
     1561 gaatcaaacg cggccaaaga aactagttct tctccaatcc cgtagtcttc cgggggccac
     1621 gggcccgtgt tcagggtgga atccatcctc ttgtcagatc catctccaga aacactagtt
     1681 ttgaaaagta tgatgtcgtg agtgatgaag tctaggaatc tgggaggcag gtccctgtgg
     1741 agactctaac caagtcagag attattgttc ccagattata ttattagagg acaataggat
     1801 tgcctctata tatactcaat aaaacaaata tgatcacttt tca
//
LOCUS       XM_032605647            1717 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 2 member 5
            (SLC2A5), transcript variant X4, mRNA.
ACCESSION   XM_032605647
VERSION     XM_032605647.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1717
                     /gene="SLC2A5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740221"
     CDS             86..1150
                     /gene="SLC2A5"
                     /codon_start=1
                     /product="solute carrier family 2, facilitated glucose
                     transporter member 5 isoform X3"
                     /protein_id="XP_032461538.1"
                     /db_xref="GeneID:116740221"
                     /translation="MYLGELAPKNLRGALGVVPQLFITVGILAAQILGLRSLLANEEG
                     WPILLGVTGIPAAVQLLLLPFFPESPRYLLIQKKDEAAAKNALRELRGWDDVDAETQE
                     IWEEDRAEKAAGFISVLKLLRMRSLRWQVISIVVLMGGQQLSGVNAIYYYADQIYLSA
                     GVRAQDVQYVTAGTGAVNMLMTICAVFVVELLGRRVLLLLGFSICFTACCVLTAALAL
                     QDTVSWMPYVSIACIISYVIGHALGPSPIPALLITEIFLQSSRPAAYMVGGSVHWLSN
                     FTVGLIFPFIQVGLGAYSFIIFAMICVLTTIYTFLVVPETKSKTFIEINEIFTKMNEV
                     SEVHPEKEELKDFPPSTTGQ"
     misc_feature    <86..1057
                     /gene="SLC2A5"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:475125"
ORIGIN      
        1 tgctcgccta cgtcacgctg cccgtgatct acctcctcat ccggaagcac atcaacagag
       61 cggtctgtct tccaatgtcg tccctatgta cttaggggag ctggccccta agaacctgcg
      121 gggggccctg ggggtggtgc cccagctctt catcaccgtc ggcatcctcg cggcccagat
      181 cttgggtctt cggagtctcc tcgcaaacga agaaggctgg cccatcctcc tcggcgtgac
      241 cgggatcccc gcggcagtgc agctccttct gttgcccttc ttccccgaga gccccaggta
      301 cctgctcatt cagaagaaag atgaagcggc tgccaaaaac gcgctgaggg aactgcgcgg
      361 ctgggacgac gtggacgccg agacacagga gatctgggag gaagacaggg ccgagaaggc
      421 cgccggcttc atctccgtgc tgaagctgct gagaatgagg tccctgcggt ggcaggtcat
      481 ctccatcgtc gtcctcatgg gcggccagca gctgtcggga gtgaacgcga tctactacta
      541 cgcagaccag atctacctga gcgctggggt gagggcacag gatgtccagt atgtgacggc
      601 gggcacaggc gcggtcaaca tgctgatgac catctgcgcc gttttcgtgg tggagctcct
      661 ggggaggaga gtcctgctcc tcctaggctt ctccatctgc ttcaccgcct gctgcgtgct
      721 gactgccgcc ctggctctgc aggacacagt atcctggatg ccctacgtca gcatcgcctg
      781 catcatctcc tatgtcatag gacatgccct tgggcccagt cctatccccg cactgctcat
      841 caccgagatc ttcctgcagt cctcccggcc ggccgcctac atggtggggg gcagtgtcca
      901 ctggctctcc aacttcactg tgggcttgat cttcccattc attcaagtgg gcctcggagc
      961 ttacagcttt atcatttttg ccatgatatg tgttctcacc accatctaca ccttcctggt
     1021 tgtccccgag accaagtcca agaccttcat agaaatcaat gagatcttca ccaagatgaa
     1081 cgaagtgtca gaggtgcacc cagaaaagga ggagctaaag gactttccac cctctactac
     1141 ggggcagtaa ctcgagagga ggagcctgtg aatcaggtct gcgtggagct tccctcctgg
     1201 gctatgaatc cagaactagg acaagtccgg tgtggaaggc aggccctgat gagactgtcg
     1261 taagggcttc tgtgcagttc ttaaagccag gctgtctctt tccaggttga cccatcacca
     1321 accccaaggc acgccgggca gctgtccctc agccatgctg ggtcagccat tgtgtggctc
     1381 ctggcaacac cggctcttat aatgaaagcc attaccgtgg tgttgagatg gaaggaatca
     1441 aacgcggcca aagaaactag ttcttctcca atcccgtagt cttccggggg ccacgggccc
     1501 gtgttcaggg tggaatccat cctcttgtca gatccatctc cagaaacact agttttgaaa
     1561 agtatgatgt cgtgagtgat gaagtctagg aatctgggag gcaggtccct gtggagactc
     1621 taaccaagtc agagattatt gttcccagat tatattatta gaggacaata ggattgcctc
     1681 tatatatact caataaaaca aatatgatca cttttca
//
LOCUS       XM_032605661            4360 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein-coupled receptor 157 (GPR157),
            mRNA.
ACCESSION   XM_032605661
VERSION     XM_032605661.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4360
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4360
                     /gene="GPR157"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740236"
     CDS             145..1158
                     /gene="GPR157"
                     /codon_start=1
                     /product="G-protein coupled receptor 157"
                     /protein_id="XP_032461552.1"
                     /db_xref="GeneID:116740236"
                     /translation="MPPPAPPTELVPSERAVVLLSCALSALGSGLLVATHALWPDLRS
                     RARRLLLFLSLADLLSAASYFYGVLQDFEGPSWDCVLQGALSTFANTSSFFWTVAIAL
                     YLYLSIVRTSRGPGDGRLLWAFHVVSWGIPLVITVAAVTLKKIGYDASDVSVGWCWID
                     LEAEDRVLWMLLTGKLWEMLAYVTLPVIYLLIRKHINRAREALSEYRPLVSQAHQLQR
                     RTSAADKKLALIPLIFVCLRIWSTVRFVLTLCGSPAVRTPVLVVLHGIGNTFQGGANC
                     ITFILCTRTVRTRLLSLCSCCCPQASAAAESPLGPPRPLRPPQRAGESQGPRRAADEL
                     PST"
     misc_feature    <370..987
                     /gene="GPR157"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    382..450
                     /gene="GPR157"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    511..561
                     /gene="GPR157"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    631..702
                     /gene="GPR157"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    814..882
                     /gene="GPR157"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    916..987
                     /gene="GPR157"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 ggacctggag ggcccgggag gggccgagac gcgggcgggg cgggcgccgg gatgtgagcg
       61 gctcgttggt ttgtgcccag acggcggcgg cggcggcggc tgccgcaagc ggcgacccgg
      121 ccccggcccg ctccgctcct gaccatgcca cctcccgcac ctcccacaga gctggtgccg
      181 tcggagcgcg ccgtggtgct gctatcgtgc gcgctctccg cgctaggttc gggcctgctg
      241 gtggccacgc acgccctgtg gcccgacctg cgcagccggg cgcggcgcct gctgctcttc
      301 ctgtcgctgg ccgacctgct gtcggccgcc tcctacttct acggggtgct gcaggacttc
      361 gagggccctt cgtgggactg cgtgctgcag ggcgcgctct ccaccttcgc caacaccagc
      421 tccttcttct ggacggtggc catcgccctc tacctgtatc ttagcatcgt ccgcacctcg
      481 cgcggccccg gagacggccg cctgctttgg gctttccacg tcgtcagctg ggggattccg
      541 ctggtcatca ccgtggcggc tgtcacgcta aagaagatcg gctacgacgc ctcggacgtg
      601 tccgtgggct ggtgctggat cgacctggag gcggaggacc gcgtgctgtg gatgctgctg
      661 accgggaagc tgtgggagat gctcgcctac gtcacgctgc ccgtgatcta cctcctcatc
      721 cggaagcaca tcaacagagc gcgtgaggct ctctccgagt accggcccct cgtgtcccag
      781 gcgcaccagc tccagcgccg cacctccgcg gccgataaga agctggccct catcccgctc
      841 atcttcgtct gcctccggat ctggagcacc gtgcggttcg tcctgaccct ctgtggctcc
      901 ccggcagtgc ggacgccagt gctcgtggtt ctgcacggga tcgggaacac ctttcagggg
      961 ggcgccaact gcatcacgtt catcctctgc acccgcaccg tccggactcg tctcctctcc
     1021 ctctgctcct gctgctgccc tcaggcttcc gctgccgccg agagcccact gggcccccca
     1081 aggcctctgc gccctccaca acgggcgggc gagtctcagg ggcccaggcg ggccgcggat
     1141 gaacttccaa gcacctgagc tgctgccccc ctagttctgt gcgtgggtgc tgccgacctg
     1201 gggcgggcgg cgccgagtcc cctctgcagg gagcggggcg tcagccgcgc tgtccgcctt
     1261 cggctaccga agctcgagcc ccgtggggag cagcgcagac tcagcttgtc tacctcctcg
     1321 accctcaagc acgtccccct cacaccgcat ccttctgcac gcaggggaat tcgtcagcat
     1381 gagggctgca ctgagattca gggaaacccg tggtacctga tcactgccag gttgccttgc
     1441 ggtccgggcg tcatcggcct catgaccaca cagcactgtt tacagctgga gggacccaca
     1501 ccggtgggaa aagcacatag agatatatat acactgggca cccatcctca agaaaatgtc
     1561 agagggtacc agcgacgtgg cccccactga ggtatcacag agcagactcc tggttcgtca
     1621 gggcgttgag attcccccga gagcctggct tttctcggat ggctttgctc gtcaacgaaa
     1681 gggccagtta cctttcacca ggaggttccc cccctggtga ccagcgggag cacagccgca
     1741 cacagctgca gggcagctgg tctcctgggg cctcctgaat tctctccacg ggctgccagc
     1801 ccttgatgta tggattgtgt ttgagtttca agcagaggcc aggatcccga ctcctgtctc
     1861 ccccaggcac ttaacattaa aatgcaggtc cctcctccaa tgcaagggct ggaacaggac
     1921 aggaagaggc cactgcagaa ttccccgcag acgccccact gtcacttggg tctgttcttg
     1981 taaagactga aacgggtgag tcagggaagg atctggctca ttcacttcct aggttaattt
     2041 tttataggaa aggcgaccag agggttaggg aacacccaaa tactgattcc tccctgaagg
     2101 tgaaggtttg ggggattggt tggggagagt gacgcatgca tcatggggtg atgtaaaaga
     2161 aaacggattt aaaagaagca tccgtatctc tataacctat gactcttcca ccaacccttt
     2221 catcttaggt cagaaaacaa tttctctgtt cagtcacaga agtcactggc taagagtggg
     2281 aggtgtaact gtcaccgtgc gtgcggggcc ttggggaaga aaagtacaac taacctgata
     2341 ggtgcccctc ccttggggcc catgagaact ctgcaaaact gattttctga acctgtaaaa
     2401 gggttctgga ttaaaaccaa agccacaccc tactgttgat tcctctttta ctctcaaaag
     2461 caaaatctat aataggaaga gactctgaaa gtaatagtcc tctacagaac taggtccaaa
     2521 acgctccttt tgggttccct ttttaaaaga aggttttatg aaaatcagca agaggtgaaa
     2581 catcctttta ggatccaaag aaagctctgg gctgccctac agaaagctac ttgtcagtaa
     2641 ggcggtctcc ttacagaaat ggcccacgtg aggggagtct ggggttcccc taaagacgtt
     2701 acagctcatc atgggtgcct agctggtaaa gagcctcacg ttagcttcta gaatggagca
     2761 gaaattcagg aagttgcttg ctgcaaaaga gaaggtgact cacggctgcg ttagaatatg
     2821 ggccctgggg gaatgatgct cgaacacctc ttgttctgaa gggggcccca gaggccttgg
     2881 ctcagatggt gcaacatcga tgcccgctgg gcatggcctc taaggacagg cctgagacct
     2941 gggtttcccc agaccggctg cagccggaaa acacccgcag agggagtcgg ggctcagaga
     3001 agaacatctc cgtgtgcccg ggcctccctc acattctcat tccacctgtg agttgccgct
     3061 gctgagtatt tccatttccc tccctctgct ccccaccccg tctctgcgga catgttactg
     3121 aacaggtgaa catgttactg cgagtggcgg acacgtgcgg gcaggggagg ggctcatcct
     3181 ggtgcccgga gcgttgcaaa cagcaccatc acgaagccca ggagggtctc ctgcctcgga
     3241 tcagagccag acaaaagcgc gttcctttta cacgtggctg ggcgcccgtg ggttctctct
     3301 ctctctcggc cagtgtggtt aatgtttatc caccctcacc cccccgggca cagctgtggg
     3361 acctcggcct ggacaggggc tgcatctcag cccccagccc ctctcttctc aggcacttgc
     3421 tgaaccttgg tcttttcctc aggtttacta aacactttct gcctctttgt gcttcagagt
     3481 tgtgtctgtc tgtttttgtt ttttaataaa gattatgatt tggcccaggg ttaagggtgc
     3541 agacagagct ctgcctgtgt ccacagcaag aaaagaacgt ttttgcaggc ttcccgtctc
     3601 ggcataatgg catcgcggga ggttttgtgc acgtgcagaa ttgtagggca caccctgacc
     3661 gtctgggtca aggccaaagt cttgctattt taaattaact taactacatt tcttgtgtgt
     3721 atttggtaaa ccgactgccg ttgatgtggg tgcgggtcgg cagtgcggct cagacgggcc
     3781 tgtgctgtgg ggcaggtcca gagctttcca cacggttggg ccctggagac cacgtctgtg
     3841 tccttctctg tgggcaaatg cagtcgggta ggtggccacc tggttggtat agccagcttc
     3901 tcctgagttt gcctgataga atccctggtc tgggttgggg agcaggggtg gtggtgttta
     3961 gaatgcagat tccaaggccc cgtcccatat gagagtcaac agagccaagt tccaaggacc
     4021 cgcagcttag ggctaagctc tcacgagtga gacacttcag atactgggcc accaaccagg
     4081 tctcccttct tgcatgattc tatcccgaca cccggtgacc ctctgcagtg gcaactaagg
     4141 ctcccaggtg gccgggaact gctggggcac aagggctctt ctctgaagga agcagccttc
     4201 caaaaccagc catcggagcc agctgcctag ttcggtgcag accttcgcag ccctgcagcc
     4261 ctgccgtcaa gtcttttttt tttttttttt aactgctaca tcttgggaac tttgctccca
     4321 gaagcgttcc ttgtttattt gttctacttt ctggattttg
//
LOCUS       XM_032605673            1737 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cAMP responsive element binding protein 3
            like 4 (CREB3L4), transcript variant X1, mRNA.
ACCESSION   XM_032605673
VERSION     XM_032605673.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1737
                     /gene="CREB3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740243"
     CDS             358..1689
                     /gene="CREB3L4"
                     /codon_start=1
                     /product="cyclic AMP-responsive element-binding protein
                     3-like protein 4 isoform X1"
                     /protein_id="XP_032461564.1"
                     /db_xref="GeneID:116740243"
                     /translation="MDFRTPDLLEMWLEPPEDVFSTGSFLELGLHGPPSEVPVTRLQE
                     QGLQGWESSGGHGCGLQESEPEDFLKLFIDPNEVYCSEASPGSDSGISEDPRHPDSPP
                     APKPPSSPALYEVVYEAGTLERMQGEAGPAVGLISIQIGQCSLWEADKGPSGPALTLG
                     LREFPQPVPLPRACGHPSPFSQPPMFPSDQWSPPFMVPDACVVSELPPDAHAHILPRA
                     GTVNSVPPAALLPCQTLFLTEEEKRLLGQEGVSLPSHLPLTKAEERVLKKVRRKIRNK
                     QSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNISLVTQLRQLQMLIVH
                     TSNKAAQTSTCVLILLFSLALIILPSFSPFQGLPEAGPEDYQPHGVISRNILAHRDMT
                     ENLENPAVESRLEGPPGAKGINGSTRTVLEKTGGRAGPSRHIRTVLHADEM"
     misc_feature    1153..1335
                     /gene="CREB3L4"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein 3 (CREB3) and
                     similar proteins: a DNA-binding and dimerization domain;
                     Region: bZIP_CREB3; cd14689"
                     /db_xref="CDD:269837"
     misc_feature    1159..1314
                     /gene="CREB3L4"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269837"
     misc_feature    order(1168..1173,1177..1185,1189..1206,1210..1218)
                     /gene="CREB3L4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269837"
     misc_feature    order(1213..1215,1222..1227,1234..1239,1243..1248,
                     1255..1260,1264..1269,1276..1281,1285..1290,1297..1302,
                     1306..1311)
                     /gene="CREB3L4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269837"
ORIGIN      
        1 cggtggagcc tgcctcgaga cggtaatccc attggctcaa tgcactaccc ctcaaaagct
       61 ctggatgtct ttagcgtcca atcagactca agtgtgggaa gagcgccacg gggtggggga
      121 agggatgcct ctgtcagtct tcggcaatcc tatggactct tccctccttt gttttcaacc
      181 ccgccgtggt ttctcgcctg taaaactgac gtccagagga caggcactca agcgtcctgt
      241 gctccagtca cagccatctc tatccttccc tgaggagcca gcaaaccctc aggaagattt
      301 gctatcgcta ggagaaactg aggcagaaag ggcaggctgc tgttttaaga ccgaagcatg
      361 gatttcagaa cccctgacct gctggaaatg tggctggagc ctccagaaga cgtcttctca
      421 acaggatcct tcctggagct gggactccat ggtccacctt cagaggtccc agtaactagg
      481 ctacaggaac aggggctgca aggctgggag tccagtgggg gccatggctg tggtcttcaa
      541 gagagtgagc ctgaagattt cctgaaactt ttcattgatc ccaatgaagt gtactgctca
      601 gaagcatctc ctggcagtga cagtggaatc tctgaggatc ctcgtcatcc agatagtccc
      661 cctgccccca agccacccag ttcccctgcc ctctatgagg ttgtctatga ggcagggacc
      721 ctagagagga tgcaggggga agctgggcca gctgtagggc tcatctccat ccaaataggt
      781 cagtgttctt tgtgggaagc ggacaaaggc ccttcaggtc cagccctaac cctggggtta
      841 agggagtttc cccaacctgt gccactaccc agggcctgcg gccatccatc tcctttctcc
      901 cagccaccta tgtttccctc agatcagtgg agcccaccat ttatggtgcc tgatgcctgt
      961 gtggtcagtg agctgcctcc cgatgctcat gcccacatcc tgcccagagc aggcactgta
     1021 aactcagtgc ctcctgcagc cctgctgccc tgtcaaacct tgttcctgac agaagaggag
     1081 aagcgtctgc tgggacagga aggggtgtcc ctaccctctc acctgcccct caccaaggca
     1141 gaggagaggg tcctcaagaa ggtcaggagg aaaatccgta acaagcagtc agctcaggac
     1201 agtcggcggc ggaagaaaga gtacatcgat ggactagaga gcagggtggc tgcctgttct
     1261 gcacagaacc aggaactaca gaaaaaagtc caggagctgg agaggcacaa catctccctg
     1321 gtgactcagc tccgccagct gcagatgctt attgttcaca cctccaacaa agctgcccag
     1381 actagcactt gtgttctgat ccttcttttc tccttggctc tcatcatcct gcccagtttc
     1441 agcccctttc agggcttacc agaagctggg cctgaggatt accagcctca tggagtgatt
     1501 tccagaaaca tcctggctca cagggacatg acagaaaatc tggagaatcc agcagtggag
     1561 tccagattgg aggggccacc tggggccaag ggtataaatg gctcaacaag gacagtgctt
     1621 gagaagacag gagggagggc aggccccagc aggcacatca gaactgtgct gcatgcagat
     1681 gagatgtgag ctgtaacact tcctggccca cttcccaatc acaataagga atccagg
//
LOCUS       XM_032605681            1633 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cAMP responsive element binding protein 3
            like 4 (CREB3L4), transcript variant X2, mRNA.
ACCESSION   XM_032605681
VERSION     XM_032605681.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1633
                     /gene="CREB3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740243"
     CDS             254..1585
                     /gene="CREB3L4"
                     /codon_start=1
                     /product="cyclic AMP-responsive element-binding protein
                     3-like protein 4 isoform X1"
                     /protein_id="XP_032461572.1"
                     /db_xref="GeneID:116740243"
                     /translation="MDFRTPDLLEMWLEPPEDVFSTGSFLELGLHGPPSEVPVTRLQE
                     QGLQGWESSGGHGCGLQESEPEDFLKLFIDPNEVYCSEASPGSDSGISEDPRHPDSPP
                     APKPPSSPALYEVVYEAGTLERMQGEAGPAVGLISIQIGQCSLWEADKGPSGPALTLG
                     LREFPQPVPLPRACGHPSPFSQPPMFPSDQWSPPFMVPDACVVSELPPDAHAHILPRA
                     GTVNSVPPAALLPCQTLFLTEEEKRLLGQEGVSLPSHLPLTKAEERVLKKVRRKIRNK
                     QSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNISLVTQLRQLQMLIVH
                     TSNKAAQTSTCVLILLFSLALIILPSFSPFQGLPEAGPEDYQPHGVISRNILAHRDMT
                     ENLENPAVESRLEGPPGAKGINGSTRTVLEKTGGRAGPSRHIRTVLHADEM"
     misc_feature    1049..1231
                     /gene="CREB3L4"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein 3 (CREB3) and
                     similar proteins: a DNA-binding and dimerization domain;
                     Region: bZIP_CREB3; cd14689"
                     /db_xref="CDD:269837"
     misc_feature    1055..1210
                     /gene="CREB3L4"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269837"
     misc_feature    order(1064..1069,1073..1081,1085..1102,1106..1114)
                     /gene="CREB3L4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269837"
     misc_feature    order(1109..1111,1118..1123,1130..1135,1139..1144,
                     1151..1156,1160..1165,1172..1177,1181..1186,1193..1198,
                     1202..1207)
                     /gene="CREB3L4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269837"
ORIGIN      
        1 ctactgcgcc cgtatcgtgg ctcctggcta ggtgcaaccc acttacgtag tgtaaggctg
       61 gggcggggtt tggctaggca ggtccaggat gcgagatcct ggaggaaaga aaaggtgtag
      121 tgtttggggc cgtcaacggg ctaggctggc ttggcagggc tgggctcttc ggaacaggta
      181 atacccaggg gggtgcctgt tggtctgaac cagagagata aggccgaagg cgagagctcc
      241 gggtgacaga agcatggatt tcagaacccc tgacctgctg gaaatgtggc tggagcctcc
      301 agaagacgtc ttctcaacag gatccttcct ggagctggga ctccatggtc caccttcaga
      361 ggtcccagta actaggctac aggaacaggg gctgcaaggc tgggagtcca gtgggggcca
      421 tggctgtggt cttcaagaga gtgagcctga agatttcctg aaacttttca ttgatcccaa
      481 tgaagtgtac tgctcagaag catctcctgg cagtgacagt ggaatctctg aggatcctcg
      541 tcatccagat agtccccctg cccccaagcc acccagttcc cctgccctct atgaggttgt
      601 ctatgaggca gggaccctag agaggatgca gggggaagct gggccagctg tagggctcat
      661 ctccatccaa ataggtcagt gttctttgtg ggaagcggac aaaggccctt caggtccagc
      721 cctaaccctg gggttaaggg agtttcccca acctgtgcca ctacccaggg cctgcggcca
      781 tccatctcct ttctcccagc cacctatgtt tccctcagat cagtggagcc caccatttat
      841 ggtgcctgat gcctgtgtgg tcagtgagct gcctcccgat gctcatgccc acatcctgcc
      901 cagagcaggc actgtaaact cagtgcctcc tgcagccctg ctgccctgtc aaaccttgtt
      961 cctgacagaa gaggagaagc gtctgctggg acaggaaggg gtgtccctac cctctcacct
     1021 gcccctcacc aaggcagagg agagggtcct caagaaggtc aggaggaaaa tccgtaacaa
     1081 gcagtcagct caggacagtc ggcggcggaa gaaagagtac atcgatggac tagagagcag
     1141 ggtggctgcc tgttctgcac agaaccagga actacagaaa aaagtccagg agctggagag
     1201 gcacaacatc tccctggtga ctcagctccg ccagctgcag atgcttattg ttcacacctc
     1261 caacaaagct gcccagacta gcacttgtgt tctgatcctt cttttctcct tggctctcat
     1321 catcctgccc agtttcagcc cctttcaggg cttaccagaa gctgggcctg aggattacca
     1381 gcctcatgga gtgatttcca gaaacatcct ggctcacagg gacatgacag aaaatctgga
     1441 gaatccagca gtggagtcca gattggaggg gccacctggg gccaagggta taaatggctc
     1501 aacaaggaca gtgcttgaga agacaggagg gagggcaggc cccagcaggc acatcagaac
     1561 tgtgctgcat gcagatgaga tgtgagctgt aacacttcct ggcccacttc ccaatcacaa
     1621 taaggaatcc agg
//
LOCUS       XM_032605692            1676 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cAMP responsive element binding protein 3
            like 4 (CREB3L4), transcript variant X3, mRNA.
ACCESSION   XM_032605692
VERSION     XM_032605692.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1676
                     /gene="CREB3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740243"
     CDS             363..1628
                     /gene="CREB3L4"
                     /codon_start=1
                     /product="cyclic AMP-responsive element-binding protein
                     3-like protein 4 isoform X2"
                     /protein_id="XP_032461583.1"
                     /db_xref="GeneID:116740243"
                     /translation="MDFRTPDLLEMWLEPPEDVFSTGSFLELGLHGPPSEGLQESEPE
                     DFLKLFIDPNEVYCSEASPGSDSGISEDPRHPDSPPAPKPPSSPALYEVVYEAGTLER
                     MQGEAGPAVGLISIQIGQCSLWEADKGPSGPALTLGLREFPQPVPLPRACGHPSPFSQ
                     PPMFPSDQWSPPFMVPDACVVSELPPDAHAHILPRAGTVNSVPPAALLPCQTLFLTEE
                     EKRLLGQEGVSLPSHLPLTKAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVA
                     ACSAQNQELQKKVQELERHNISLVTQLRQLQMLIVHTSNKAAQTSTCVLILLFSLALI
                     ILPSFSPFQGLPEAGPEDYQPHGVISRNILAHRDMTENLENPAVESRLEGPPGAKGIN
                     GSTRTVLEKTGGRAGPSRHIRTVLHADEM"
     misc_feature    1092..1274
                     /gene="CREB3L4"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein 3 (CREB3) and
                     similar proteins: a DNA-binding and dimerization domain;
                     Region: bZIP_CREB3; cd14689"
                     /db_xref="CDD:269837"
     misc_feature    1098..1253
                     /gene="CREB3L4"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269837"
     misc_feature    order(1107..1112,1116..1124,1128..1145,1149..1157)
                     /gene="CREB3L4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269837"
     misc_feature    order(1152..1154,1161..1166,1173..1178,1182..1187,
                     1194..1199,1203..1208,1215..1220,1224..1229,1236..1241,
                     1245..1250)
                     /gene="CREB3L4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269837"
ORIGIN      
        1 agttacggtg gagcctgcct cgagacggta atcccattgg ctcaatgcac tacccctcaa
       61 aagctctgga tgtctttagc gtccaatcag actcaagtgt gggaagagcg ccacggggtg
      121 ggggaaggga tgcctctgtc agtcttcggc aatcctatgg actcttccct cctttgtttt
      181 caaccccgcc gtggtttctc gcctgtaaaa ctgacgtcca gaggacaggc actcaagcgt
      241 cctgtgctcc agtcacagcc atctctatcc ttccctgagg agccagcaaa ccctcaggaa
      301 gatttgctat cgctaggaga aactgaggca gaaagggcag gctgctgttt taagaccgaa
      361 gcatggattt cagaacccct gacctgctgg aaatgtggct ggagcctcca gaagacgtct
      421 tctcaacagg atccttcctg gagctgggac tccatggtcc accttcagag ggtcttcaag
      481 agagtgagcc tgaagatttc ctgaaacttt tcattgatcc caatgaagtg tactgctcag
      541 aagcatctcc tggcagtgac agtggaatct ctgaggatcc tcgtcatcca gatagtcccc
      601 ctgcccccaa gccacccagt tcccctgccc tctatgaggt tgtctatgag gcagggaccc
      661 tagagaggat gcagggggaa gctgggccag ctgtagggct catctccatc caaataggtc
      721 agtgttcttt gtgggaagcg gacaaaggcc cttcaggtcc agccctaacc ctggggttaa
      781 gggagtttcc ccaacctgtg ccactaccca gggcctgcgg ccatccatct cctttctccc
      841 agccacctat gtttccctca gatcagtgga gcccaccatt tatggtgcct gatgcctgtg
      901 tggtcagtga gctgcctccc gatgctcatg cccacatcct gcccagagca ggcactgtaa
      961 actcagtgcc tcctgcagcc ctgctgccct gtcaaacctt gttcctgaca gaagaggaga
     1021 agcgtctgct gggacaggaa ggggtgtccc taccctctca cctgcccctc accaaggcag
     1081 aggagagggt cctcaagaag gtcaggagga aaatccgtaa caagcagtca gctcaggaca
     1141 gtcggcggcg gaagaaagag tacatcgatg gactagagag cagggtggct gcctgttctg
     1201 cacagaacca ggaactacag aaaaaagtcc aggagctgga gaggcacaac atctccctgg
     1261 tgactcagct ccgccagctg cagatgctta ttgttcacac ctccaacaaa gctgcccaga
     1321 ctagcacttg tgttctgatc cttcttttct ccttggctct catcatcctg cccagtttca
     1381 gcccctttca gggcttacca gaagctgggc ctgaggatta ccagcctcat ggagtgattt
     1441 ccagaaacat cctggctcac agggacatga cagaaaatct ggagaatcca gcagtggagt
     1501 ccagattgga ggggccacct ggggccaagg gtataaatgg ctcaacaagg acagtgcttg
     1561 agaagacagg agggagggca ggccccagca ggcacatcag aactgtgctg catgcagatg
     1621 agatgtgagc tgtaacactt cctggcccac ttcccaatca caataaggaa tccagg
//
LOCUS       XM_032605700            1814 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cAMP responsive element binding protein 3
            like 4 (CREB3L4), transcript variant X4, mRNA.
ACCESSION   XM_032605700
VERSION     XM_032605700.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1814
                     /gene="CREB3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740243"
     CDS             352..1539
                     /gene="CREB3L4"
                     /codon_start=1
                     /product="cyclic AMP-responsive element-binding protein
                     3-like protein 4 isoform X3"
                     /protein_id="XP_032461591.1"
                     /db_xref="GeneID:116740243"
                     /translation="MDFRTPDLLEMWLEPPEDVFSTGSFLELGLHGPPSEVPVTRLQE
                     QGLQGWESSGGHGCGLQESEPEDFLKLFIDPNEVYCSEASPGSDSGISEDPRHPDSPP
                     APKPPSSPALYEVVYEAGTLERMQGEAGPAVGLISIQIDQWSPPFMVPDACVVSELPP
                     DAHAHILPRAGTVNSVPPAALLPCQTLFLTEEEKRLLGQEGVSLPSHLPLTKAEERVL
                     KKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNISLVTQ
                     LRQLQMLIVHTSNKAAQTSTCVLILLFSLALIILPSFSPFQGLPEAGPEDYQPHGVIS
                     RNILAHRDMTENLENPAVESRLEGPPGAKGINGSTRTVLEKTGGRAGPSRHIRTVLHA
                     DEM"
     misc_feature    1003..1185
                     /gene="CREB3L4"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein 3 (CREB3) and
                     similar proteins: a DNA-binding and dimerization domain;
                     Region: bZIP_CREB3; cd14689"
                     /db_xref="CDD:269837"
     misc_feature    1009..1164
                     /gene="CREB3L4"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269837"
     misc_feature    order(1018..1023,1027..1035,1039..1056,1060..1068)
                     /gene="CREB3L4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269837"
     misc_feature    order(1063..1065,1072..1077,1084..1089,1093..1098,
                     1105..1110,1114..1119,1126..1131,1135..1140,1147..1152,
                     1156..1161)
                     /gene="CREB3L4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269837"
ORIGIN      
        1 agcctgcctc gagacggtaa tcccattggc tcaatgcact acccctcaaa agctctggat
       61 gtctttagcg tccaatcaga ctcaagtgtg ggaagagcgc cacggggtgg gggaagggat
      121 gcctctgtca gtcttcggca atcctatgga ctcttccctc ctttgttttc aaccccgccg
      181 tggtttctcg cctgtaaaac tgacgtccag aggacaggca ctcaagcgtc ctgtgctcca
      241 gtcacagcca tctctatcct tccctgagga gccagcaaac cctcaggaag atttgctatc
      301 gctaggagaa actgaggcag aaagggcagg ctgctgtttt aagaccgaag catggatttc
      361 agaacccctg acctgctgga aatgtggctg gagcctccag aagacgtctt ctcaacagga
      421 tccttcctgg agctgggact ccatggtcca ccttcagagg tcccagtaac taggctacag
      481 gaacaggggc tgcaaggctg ggagtccagt gggggccatg gctgtggtct tcaagagagt
      541 gagcctgaag atttcctgaa acttttcatt gatcccaatg aagtgtactg ctcagaagca
      601 tctcctggca gtgacagtgg aatctctgag gatcctcgtc atccagatag tccccctgcc
      661 cccaagccac ccagttcccc tgccctctat gaggttgtct atgaggcagg gaccctagag
      721 aggatgcagg gggaagctgg gccagctgta gggctcatct ccatccaaat agatcagtgg
      781 agcccaccat ttatggtgcc tgatgcctgt gtggtcagtg agctgcctcc cgatgctcat
      841 gcccacatcc tgcccagagc aggcactgta aactcagtgc ctcctgcagc cctgctgccc
      901 tgtcaaacct tgttcctgac agaagaggag aagcgtctgc tgggacagga aggggtgtcc
      961 ctaccctctc acctgcccct caccaaggca gaggagaggg tcctcaagaa ggtcaggagg
     1021 aaaatccgta acaagcagtc agctcaggac agtcggcggc ggaagaaaga gtacatcgat
     1081 ggactagaga gcagggtggc tgcctgttct gcacagaacc aggaactaca gaaaaaagtc
     1141 caggagctgg agaggcacaa catctccctg gtgactcagc tccgccagct gcagatgctt
     1201 attgttcaca cctccaacaa agctgcccag actagcactt gtgttctgat ccttcttttc
     1261 tccttggctc tcatcatcct gcccagtttc agcccctttc agggcttacc agaagctggg
     1321 cctgaggatt accagcctca tggagtgatt tccagaaaca tcctggctca cagggacatg
     1381 acagaaaatc tggagaatcc agcagtggag tccagattgg aggggccacc tggggccaag
     1441 ggtataaatg gctcaacaag gacagtgctt gagaagacag gagggagggc aggccccagc
     1501 aggcacatca gaactgtgct gcatgcagat gagatgtgag ctgtaacact tcctggccca
     1561 cttcccaatc acaataagga atccagggct ccgctggctg tggttctgct tcctcctggg
     1621 tttcccactc agggctgttt ggcctcaggg gtctgaatca catcaggatg ccctagatgt
     1681 ctgtacccca tggctcagtc tgcctatgtc aaggggcacc tcaaatactt ttgtcatgta
     1741 tctgtgattt tatttcttct ttggggatag ggttgagggg aaactgacat tttggctgag
     1801 aaataaattt tttt
//
LOCUS       XM_032605710            1537 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cAMP responsive element binding protein 3
            like 4 (CREB3L4), transcript variant X5, mRNA.
ACCESSION   XM_032605710
VERSION     XM_032605710.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1537
                     /gene="CREB3L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116740243"
     CDS             367..1410
                     /gene="CREB3L4"
                     /codon_start=1
                     /product="cyclic AMP-responsive element-binding protein
                     3-like protein 4 isoform X4"
                     /protein_id="XP_032461601.1"
                     /db_xref="GeneID:116740243"
                     /translation="MDFRTPDLLEMWLEPPEDVFSTGSFLELGLHGPPSEVPVTRLQE
                     QGLQGWESSGGHGCGLQESEPEDFLKLFIDPNEVYCSEASPGSDSGISEDPRHPDSPP
                     APKPPSSPALYEVVYEAGTLERMQGEAGPAVGLISIQIGQCSLWEADKGPSGPALTLG
                     LREFPQPVPLPRACGHPSPFSQPPMFPSDQWSPPFMVPDACVVSELPPDAHAHILPRA
                     GTVNSVPPAALLPCQTLFLTEEEKRLLGQEGVSLPSHLPLTKAEERVLKKVRRKIRNK
                     QSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNISLVTQLRQLQMLIVH
                     TSNKAAQTSTCVL"
     misc_feature    1162..1344
                     /gene="CREB3L4"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein 3 (CREB3) and
                     similar proteins: a DNA-binding and dimerization domain;
                     Region: bZIP_CREB3; cd14689"
                     /db_xref="CDD:269837"
     misc_feature    1168..1323
                     /gene="CREB3L4"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269837"
     misc_feature    order(1177..1182,1186..1194,1198..1215,1219..1227)
                     /gene="CREB3L4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269837"
     misc_feature    order(1222..1224,1231..1236,1243..1248,1252..1257,
                     1264..1269,1273..1278,1285..1290,1294..1299,1306..1311,
                     1315..1320)
                     /gene="CREB3L4"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269837"
ORIGIN      
        1 gaccagttac ggtggagcct gcctcgagac ggtaatccca ttggctcaat gcactacccc
       61 tcaaaagctc tggatgtctt tagcgtccaa tcagactcaa gtgtgggaag agcgccacgg
      121 ggtgggggaa gggatgcctc tgtcagtctt cggcaatcct atggactctt ccctcctttg
      181 ttttcaaccc cgccgtggtt tctcgcctgt aaaactgacg tccagaggac aggcactcaa
      241 gcgtcctgtg ctccagtcac agccatctct atccttccct gaggagccag caaaccctca
      301 ggaagatttg ctatcgctag gagaaactga ggcagaaagg gcaggctgct gttttaagac
      361 cgaagcatgg atttcagaac ccctgacctg ctggaaatgt ggctggagcc tccagaagac
      421 gtcttctcaa caggatcctt cctggagctg ggactccatg gtccaccttc agaggtccca
      481 gtaactaggc tacaggaaca ggggctgcaa ggctgggagt ccagtggggg ccatggctgt
      541 ggtcttcaag agagtgagcc tgaagatttc ctgaaacttt tcattgatcc caatgaagtg
      601 tactgctcag aagcatctcc tggcagtgac agtggaatct ctgaggatcc tcgtcatcca
      661 gatagtcccc ctgcccccaa gccacccagt tcccctgccc tctatgaggt tgtctatgag
      721 gcagggaccc tagagaggat gcagggggaa gctgggccag ctgtagggct catctccatc
      781 caaataggtc agtgttcttt gtgggaagcg gacaaaggcc cttcaggtcc agccctaacc
      841 ctggggttaa gggagtttcc ccaacctgtg ccactaccca gggcctgcgg ccatccatct
      901 cctttctccc agccacctat gtttccctca gatcagtgga gcccaccatt tatggtgcct
      961 gatgcctgtg tggtcagtga gctgcctccc gatgctcatg cccacatcct gcccagagca
     1021 ggcactgtaa actcagtgcc tcctgcagcc ctgctgccct gtcaaacctt gttcctgaca
     1081 gaagaggaga agcgtctgct gggacaggaa ggggtgtccc taccctctca cctgcccctc
     1141 accaaggcag aggagagggt cctcaagaag gtcaggagga aaatccgtaa caagcagtca
     1201 gctcaggaca gtcggcggcg gaagaaagag tacatcgatg gactagagag cagggtggct
     1261 gcctgttctg cacagaacca ggaactacag aaaaaagtcc aggagctgga gaggcacaac
     1321 atctccctgg tgactcagct ccgccagctg cagatgctta ttgttcacac ctccaacaaa
     1381 gctgcccaga ctagcacttg tgttctgtga tttccagaaa catcctggct cacagggaca
     1441 tgacagaaaa tctggagaat ccagcagtgg agtccagatt ggaggggcca cctggggcca
     1501 agggtataaa tggctcaaca aggacagtgc ttgagaa
//
LOCUS       XM_032605723            1273 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus jumping translocation breakpoint (JTB),
            mRNA.
ACCESSION   XM_032605723
VERSION     XM_032605723.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1273
                     /gene="JTB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 4
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740264"
     CDS             440..880
                     /gene="JTB"
                     /codon_start=1
                     /product="protein JTB"
                     /protein_id="XP_032461614.1"
                     /db_xref="GeneID:116740264"
                     /translation="MPAGAGRRGLPQGRHLCWLLCAFTLRLCQAEAPVREEKLSVSTS
                     NLPCWLVEEFVVAEECAPCSNFQAKTTPECGSTGYVEKITCSSTKRSEFKSCRSALME
                     QHLFWKFEGTVIGVALVFACLVIVRQRQLDRKALEKVRKQIESI"
     misc_feature    548..868
                     /gene="JTB"
                     /note="Jumping translocation breakpoint protein (JTB);
                     Region: JTB; pfam05439"
                     /db_xref="CDD:398872"
ORIGIN      
        1 gatccaattc ccagggagca gcgagcggaa gactacgaag cccatcaggc aagccaaggg
       61 cctcttcttc cgatgactgg cctagctctg gaaaacctgc ccacgcccag gatcctccgc
      121 gcgcaagatg gccgcgccgg gagcggaagc ggagcggagg aggtgctagg ctctacgccc
      181 cctcggcttt ctgtgaggac cataccagtc cgaagaagga agctcatgga cccgacaaat
      241 gcgtattgcc ttttctcgcc gtgaccatgg gggcgtactg acagagcctt tgatctgata
      301 ggcaacccca gcatttcgca gccctgactt ggaacctccc cgaggactgc agtgtaagcg
      361 cggtctctgc gttccgaccg aggcaggagg ccagtcaggc aggtccctct gtcccgacag
      421 gtgggacact gagcactcca tgccagcggg cgcggggagg cgtggcctcc cccagggccg
      481 ccacctctgc tggttgctct gcgctttcac tttaaggctc tgccaagcag aagctcccgt
      541 gcgggaggag aagctgtcag tgagcacctc aaatttgccg tgctggctgg tggaagagtt
      601 tgtggtggcg gaagagtgtg ctccatgttc taatttccag gctaaaacca cccccgagtg
      661 tggttccaca gggtatgtgg agaaaatcac atgcagctcg actaagagga gcgagttcaa
      721 aagctgccgc tcagctctga tggaacaaca cttattctgg aaattcgaag ggactgtcat
      781 aggtgtggcc ttggtctttg cttgccttgt cattgttcgt cagcgacaac tggacagaaa
      841 ggcgctggaa aaggtccgga agcaaattga gtccatatag ctacctcctc ccctttcatc
      901 tgggtcttag agaccctacc tcagacagaa aggggaatga actgactcgt gcccctggtt
      961 ctctggaacc ttgtggtggc accccctttc tcccatcttc ctcatctaaa tcattaatga
     1021 gcagaataaa aagagtaaaa tcgtttcctt ccctagtgta atttggtttg gggcaggaag
     1081 tcatgggggt agagagggaa agggggtggc aactttaggc cccagtttac caggtaccta
     1141 tcttcctatc tcttctacta ttacttaaaa ctgtcaggat acaattttag caaaaaaaaa
     1201 aatttatttc tcagccaaaa tgtcagtttc ccctcaaccc tatccccaaa gaagaaataa
     1261 aatcacagat aca
//
LOCUS       XM_032605735            2561 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heparan sulfate 2-O-sulfotransferase 1
            (HS2ST1), transcript variant X1, mRNA.
ACCESSION   XM_032605735
VERSION     XM_032605735.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2561
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2561
                     /gene="HS2ST1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 97% coverage of the annotated genomic feature
                     by RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116740271"
     CDS             405..1478
                     /gene="HS2ST1"
                     /codon_start=1
                     /product="heparan sulfate 2-O-sulfotransferase 1 isoform
                     X1"
                     /protein_id="XP_032461626.1"
                     /db_xref="GeneID:116740271"
                     /translation="MGLLRIMMPPKLQLLAVVAFAVAMLFLENQIQKLEESRSKLERA
                     IARHEVREIEQRHTMDGPRQDAALDEEEDMVIIYNRVPKTASTSFTNIAYDLCAKNKY
                     HVLHINTTKNNPVMSLQDQVRFVKNITSWKEMKPGFYHGHISYLDFAKFGMKKKPIYI
                     NVIRDPIERLVSYYYFLRFGDDYRPGLRRRKQGDKKTFDECVAEGGSDCAPEKLWLQI
                     PFFCGHSSECWNVGSRWAMDQAKYNLVNEYFLVGVTEELEDFIMLLEAALPRFFRGAT
                     ELYRTVGKKSHLRKTTEKKLPTKQTIAKLQQSDIWKMENEFYEFALEQFQFIRAHAVR
                     EKDGDLYILAQNFFYEKIYPKSN"
     misc_feature    627..1367
                     /gene="HS2ST1"
                     /note="Sulfotransferase family; Region: Sulfotransfer_2;
                     pfam03567"
                     /db_xref="CDD:427369"
ORIGIN      
        1 gcagccgcag ccgcaacgta gaagcgcgcg gccgtgagca aaggagggag ggaaggaagg
       61 aaaagaggga ggcaggcagg caggggggcg cggggctcgg ggactgaggc ggcagaggga
      121 agcgagagcc cggcagccgc ttcgcgctgt gtttgctgcg cgggcttttg gaggggcggt
      181 agtggagtcg gccgaggaga agcggacacc ggcggcgttg gtgttggcgc ctgggggcgg
      241 gggactgggg aggcgagaag gggggtcgct gcggtgcttc tctcgctgtc gcgctctcct
      301 tgcctttctc ccggctcggt gggctcctcc cggccgtctc ctttgcctcc ggggccccga
      361 tccccgcccc ccgcggtatg tcttgatccc gagcagcggg tttcatgggg ctcctcagga
      421 ttatgatgcc gcccaagttg cagctgctgg cggtggtggc cttcgcagtg gcaatgctct
      481 tcttggagaa ccagatacag aaactggagg agtcccggtc gaagctagaa agggctattg
      541 caagacatga agttcgagag attgagcagc gacatacgat ggatggccct cggcaagatg
      601 cagctttaga tgaggaagaa gacatggtga tcatttataa cagagtcccc aaaactgcaa
      661 gcacctcttt taccaatatt gcctatgacc tatgtgcaaa gaataaatac catgttcttc
      721 acatcaacac taccaaaaat aatccagtaa tgtcactgca agatcaggtg cgctttgtaa
      781 agaatataac ttcctggaaa gagatgaaac cagggtttta tcatgggcac atttcttatt
      841 tggattttgc aaaatttggt atgaagaaga agccaattta cattaatgtc ataagggatc
      901 ctattgagag gctagtttct tactattact ttctgagatt tggagatgat tatagaccag
      961 ggttaagaag acgaaaacaa ggggacaaaa agacctttga tgaatgtgta gctgagggcg
     1021 gctcagactg tgctccagag aagctctggc ttcaaatccc attcttctgt ggccacagct
     1081 cggaatgctg gaatgtagga agcaggtggg ctatggatca agccaaatat aacctagtta
     1141 atgagtactt tctggtggga gttactgaag agcttgaaga ttttatcatg ttattggagg
     1201 cagctttgcc ccggttcttc aggggtgcta cagagctcta tcgtacagta ggaaagaaat
     1261 ctcatcttag gaaaaccaca gagaagaaac tccctactaa acaaaccatt gcaaaactac
     1321 agcaatctga catttggaaa atggagaatg agttctatga gtttgcacta gagcagttcc
     1381 aattcatcag agcccatgct gtacgagaaa aagatggaga cctctacatc cttgcacaga
     1441 actttttcta tgaaaagatt taccctaaat cgaactgagt acaaggtgtg gcagttagat
     1501 tcttgaacta caactttgac cctgtcttca ccttagttct cagctccaca acttggattg
     1561 ctgatgggtg tgtaagataa tttgtattga actgagttag gatacagaca gtgacgtcaa
     1621 ggaagtagat tctggctgac atgtcagtgg tctaggaagt ttaagtttca gccttttttt
     1681 tttttttttc tggttaaatt ttggtgggag ttataacctc ctgcctgaac aaaacctaca
     1741 catcaccgaa aataaacaca tagcaggtct aattgaaggc caaataatga aatacaattt
     1801 cagaaaaagt tctgatactc tctttctgat aaagcatttt tttcaactaa ccatgaatga
     1861 agatgaatcc atttgctact tccaccttca cctggaggtt tgggttatac acctctactg
     1921 gatagtgtta ttaactgttt ggcgatgtgt actttgtttc tgtgaatcac gtcccatgaa
     1981 atttactgaa atgtttgatc acgtttgcta agactgtatc tgctgtagtt ggaactgccc
     2041 atatttatgt aggtcatctt aattttctta aaaaaaatga tgattagtgt taaaaatcaa
     2101 tttaaaccat tattaatact gtaaaaagaa tcaaagcagt atttctcatt cctgtctccc
     2161 cagtatctaa gattggggaa acacttcaaa gaatgttgac attgcctgaa gttttggtta
     2221 aggcttccac acattaatat caaaaaaata agtttagtat ttgtttctcc atgggttatt
     2281 tgtaaaggtg taaactgagg tattggtgag tccatattat aactccattt agtgagctgt
     2341 ggtatgggta ggattttcct acttcttctg tacttttact tgtagactat ttttactaag
     2401 gtgctttata atgtgtttta aagcattgca tttacaaaaa aaaaaggaaa atgctgtaaa
     2461 tattgcatat tttatgtatt tggaccaaaa gattataagt aattagacaa aaagtggttt
     2521 tgcaccaatt ttattatgtc aagtaaaacc atcagaccta c
//
LOCUS       XM_032605745            2567 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heparan sulfate 2-O-sulfotransferase 1
            (HS2ST1), transcript variant X2, mRNA.
ACCESSION   XM_032605745
VERSION     XM_032605745.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2567
                     /gene="HS2ST1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 14
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740271"
     CDS             414..1484
                     /gene="HS2ST1"
                     /codon_start=1
                     /product="heparan sulfate 2-O-sulfotransferase 1 isoform
                     X2"
                     /protein_id="XP_032461636.1"
                     /db_xref="GeneID:116740271"
                     /translation="MGLLRIMMPPKLQLLAVVAFAVAMLFLENQIQKLEESRSKLERA
                     IARHEVREIEQRHTMDGPRQDAALDEEEDMVIIYNRVPKTASTSFTNIAYDLCAKNKY
                     HVLHINTTKNNPVMSLQDQVRFVKNITSWKEMKPGFYHGHISYLDFAKFGMKKKPIYI
                     NVIRDPIERLVSYYYFLRFGDDYRPGLRRRKQGDKKTFDECVAEGGSDCAPEKLWLQI
                     PFFCGHSSECWNVGSRWAMDQAKYNLVNEYFLVGVTEELEDFIMLLEAALPRFFRGAT
                     ELYRTGKKSHLRKTTEKKLPTKQTIAKLQQSDIWKMENEFYEFALEQFQFIRAHAVRE
                     KDGDLYILAQNFFYEKIYPKSN"
     misc_feature    636..1373
                     /gene="HS2ST1"
                     /note="Sulfotransferase family; Region: Sulfotransfer_2;
                     pfam03567"
                     /db_xref="CDD:427369"
ORIGIN      
        1 gagggcggcg cagccgcagc cgcaacgtag aagcgcgcgg ccgtgagcaa aggagggagg
       61 gaaggaagga aaagagggag gcaggcaggc aggggggcgc ggggctcggg gactgaggcg
      121 gcagagggaa gcgagagccc ggcagccgct tcgcgctgtg tttgctgcgc gggcttttgg
      181 aggggcggta gtggagtcgg ccgaggagaa gcggacaccg gcggcgttgg tgttggcgcc
      241 tgggggcggg ggactgggga ggcgagaagg ggggtcgctg cggtgcttct ctcgctgtcg
      301 cgctctcctt gcctttctcc cggctcggtg ggctcctccc ggccgtctcc tttgcctccg
      361 gggccccgat ccccgccccc cgcggtatgt cttgatcccg agcagcgggt ttcatggggc
      421 tcctcaggat tatgatgccg cccaagttgc agctgctggc ggtggtggcc ttcgcagtgg
      481 caatgctctt cttggagaac cagatacaga aactggagga gtcccggtcg aagctagaaa
      541 gggctattgc aagacatgaa gttcgagaga ttgagcagcg acatacgatg gatggccctc
      601 ggcaagatgc agctttagat gaggaagaag acatggtgat catttataac agagtcccca
      661 aaactgcaag cacctctttt accaatattg cctatgacct atgtgcaaag aataaatacc
      721 atgttcttca catcaacact accaaaaata atccagtaat gtcactgcaa gatcaggtgc
      781 gctttgtaaa gaatataact tcctggaaag agatgaaacc agggttttat catgggcaca
      841 tttcttattt ggattttgca aaatttggta tgaagaagaa gccaatttac attaatgtca
      901 taagggatcc tattgagagg ctagtttctt actattactt tctgagattt ggagatgatt
      961 atagaccagg gttaagaaga cgaaaacaag gggacaaaaa gacctttgat gaatgtgtag
     1021 ctgagggcgg ctcagactgt gctccagaga agctctggct tcaaatccca ttcttctgtg
     1081 gccacagctc ggaatgctgg aatgtaggaa gcaggtgggc tatggatcaa gccaaatata
     1141 acctagttaa tgagtacttt ctggtgggag ttactgaaga gcttgaagat tttatcatgt
     1201 tattggaggc agctttgccc cggttcttca ggggtgctac agagctctat cgtacaggaa
     1261 agaaatctca tcttaggaaa accacagaga agaaactccc tactaaacaa accattgcaa
     1321 aactacagca atctgacatt tggaaaatgg agaatgagtt ctatgagttt gcactagagc
     1381 agttccaatt catcagagcc catgctgtac gagaaaaaga tggagacctc tacatccttg
     1441 cacagaactt tttctatgaa aagatttacc ctaaatcgaa ctgagtacaa ggtgtggcag
     1501 ttagattctt gaactacaac tttgaccctg tcttcacctt agttctcagc tccacaactt
     1561 ggattgctga tgggtgtgta agataatttg tattgaactg agttaggata cagacagtga
     1621 cgtcaaggaa gtagattctg gctgacatgt cagtggtcta ggaagtttaa gtttcagcct
     1681 tttttttttt tttttctggt taaattttgg tgggagttat aacctcctgc ctgaacaaaa
     1741 cctacacatc accgaaaata aacacatagc aggtctaatt gaaggccaaa taatgaaata
     1801 caatttcaga aaaagttctg atactctctt tctgataaag catttttttc aactaaccat
     1861 gaatgaagat gaatccattt gctacttcca ccttcacctg gaggtttggg ttatacacct
     1921 ctactggata gtgttattaa ctgtttggcg atgtgtactt tgtttctgtg aatcacgtcc
     1981 catgaaattt actgaaatgt ttgatcacgt ttgctaagac tgtatctgct gtagttggaa
     2041 ctgcccatat ttatgtaggt catcttaatt ttcttaaaaa aaatgatgat tagtgttaaa
     2101 aatcaattta aaccattatt aatactgtaa aaagaatcaa agcagtattt ctcattcctg
     2161 tctccccagt atctaagatt ggggaaacac ttcaaagaat gttgacattg cctgaagttt
     2221 tggttaaggc ttccacacat taatatcaaa aaaataagtt tagtatttgt ttctccatgg
     2281 gttatttgta aaggtgtaaa ctgaggtatt ggtgagtcca tattataact ccatttagtg
     2341 agctgtggta tgggtaggat tttcctactt cttctgtact tttacttgta gactattttt
     2401 actaaggtgc tttataatgt gttttaaagc attgcattta caaaaaaaaa aggaaaatgc
     2461 tgtaaatatt gcatatttta tgtatttgga ccaaaagatt ataagtaatt agacaaaaag
     2521 tggttttgca ccaattttat tatgtcaagt aaaaccatca gacctac
//
LOCUS       XM_032605757            1879 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh family B glycoprotein (RHBG),
            transcript variant X1, mRNA.
ACCESSION   XM_032605757
VERSION     XM_032605757.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1879
                     /gene="RHBG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740281"
     CDS             96..1541
                     /gene="RHBG"
                     /codon_start=1
                     /product="ammonium transporter Rh type B isoform X1"
                     /protein_id="XP_032461648.1"
                     /db_xref="GeneID:116740281"
                     /translation="MAGSPRRTAGRRLQLPLLCLLLQGATAILFAVFVRYNHETDAAL
                     WHWHNHSNADNEFYFRYPSFQDVHTMIFVGFGFLMVFLQRYGFSSVGFTFLSAAFALQ
                     WSTLVQGFFHSFHRGHIHAQNLPETLFPHPQKRRGDTFLPTGEELSMINADFCAGAVL
                     ISFGAILGKTGPAQLLLMALLEVVLFGLNEFVLLSLLRVKDAGGSMTIHAFGAYFGLV
                     LSRVLYRPQLEKSKHRQGSVYHSDLFAMIGTIFLWIFWPSFNSAPTTLGDGQHRSALN
                     TYYSLTASTLSTFALSALVGRDGRLDMVHIQNAALAGGVVVGTSAEMMLTPFGALVAG
                     FLAGTVSTLGYKFFTPTLESKLKVQDTCGVHNLHGMPGVLGALLGVLVAGLATHEAYG
                     DGLESVFPLLAKGQRSATSQAMHQLFGLFVTLIFASVGGSLGGLLLRLPFLDAPPDSQ
                     CYEDQVYWEVPGEHEDLAQGPLRAEELETQA"
     misc_feature    276..1382
                     /gene="RHBG"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 ctcgagtgaa acttgcccgg cccgcccgtt gagtgtctcc cagggccgcg ctccaggagc
       61 cctagccgga gccggagact cgcagcttct atcccatggc cgggtctccc cgccgcaccg
      121 cgggccggcg actgcagctg cccctgctgt gcctcctcct ccagggcgcc accgccatcc
      181 tctttgcggt ctttgtccgc tacaaccatg aaaccgacgc tgccctctgg cactggcaca
      241 accacagtaa cgcggacaat gaattttact ttcgctaccc aagcttccag gatgtgcaca
      301 ccatgatctt cgtgggcttc ggcttcctca tggtcttcct gcagcgctac ggcttcagca
      361 gcgtgggctt caccttcctc tcggccgcct ttgccctgca gtggtccaca ctcgtccagg
      421 ggttcttcca ctccttccac cgtggccaca tccatgccca gaacctccct gagactctgt
      481 ttccgcatcc acaaaaaagg cgaggtgata ccttcctgcc taccggggaa gagcttagca
      541 tgatcaatgc tgacttctgc gctggggctg ttcttatctc ctttggtgcc atactgggca
      601 agactgggcc ggctcagctt ctgctcatgg ccctgctgga ggtggtgctg tttggcctca
      661 acgagtttgt gctccttagt ctcctcaggg tgaaggatgc aggaggctcc atgactattc
      721 acgcttttgg tgcctacttc gggctggtcc tctccagggt cctctatagg ccccagctgg
      781 agaagagcaa gcatcgccag ggctccgtct accattcgga cctctttgcc atgattggga
      841 ccatcttcct atggatcttc tggcctagtt tcaactctgc acccactacg ctgggggatg
      901 ggcagcatcg gtcggctctc aacacgtact actccttgac tgccagcacc ctcagcacct
      961 ttgccttgtc agcccttgtc gggagggatg ggcggctgga catggtccac atccagaatg
     1021 ccgcactggc cggaggggtt gtggtgggga catcggctga aatgatgctg acaccctttg
     1081 gggctctggt agctggcttc ctggctggga ccgtctccac actggggtac aagttcttca
     1141 cgcccaccct tgagtcaaaa ctcaaagtcc aagacacgtg cggtgtccac aacctccacg
     1201 ggatgcctgg ggtcctggga gcactcttgg gggtccttgt ggctggactg gccacccatg
     1261 aagcttacgg agatggccta gagagcgtgt ttccactcct agccaagggc cagcgcagcg
     1321 cgacgtctca ggccatgcac cagctcttcg gactgtttgt cacactgata tttgcctctg
     1381 tgggtgggag ccttggaggg ctcctgctga ggctgccctt cttggacgcc ccgccagact
     1441 cccagtgcta cgaggaccag gtttactggg aggtgcctgg ggagcatgag gatttagccc
     1501 agggacctct gagggcagag gaactggaga ctcaggccta acttgcttcc aggccttgaa
     1561 aggacgctct ccttttagaa tatgatggct ggctaccgtt gggaagcttt tcttttctag
     1621 ttcccatcac ttctgctgca agaaagaaga caggagccgg aaggagcctc cttaccatag
     1681 gcagcattgg gggaggggct gtaactagtg tggtgagggg agagcctcac acagccccac
     1741 cccactgccc cacgccctgc aagtgaggca cccaagtgac tgctgatcca ctggaccagc
     1801 atcactccgt tacagtgaag cctgagccag ggcctggctc tctgagggtg ataaatacca
     1861 cggtcaccga ggactctca
//
LOCUS       XM_032605765            1803 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh family B glycoprotein (RHBG),
            transcript variant X2, mRNA.
ACCESSION   XM_032605765
VERSION     XM_032605765.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1803
                     /gene="RHBG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 28 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740281"
     CDS             94..1470
                     /gene="RHBG"
                     /codon_start=1
                     /product="ammonium transporter Rh type B isoform X2"
                     /protein_id="XP_032461656.1"
                     /db_xref="GeneID:116740281"
                     /translation="MAGSPRRTAGRRLQLPLLCLLLQGATAILFAVFVRYNHETDAAL
                     WHWHNHSNADNEFYFRYPSFQDVHTMIFVGFGFLMVFLQRYGFSSVGFTFLSAAFALQ
                     WSTLVQGFFHSFHRGHIHVGVESMINADFCAGAVLISFGAILGKTGPAQLLLMALLEV
                     VLFGLNEFVLLSLLRVKDAGGSMTIHAFGAYFGLVLSRVLYRPQLEKSKHRQGSVYHS
                     DLFAMIGTIFLWIFWPSFNSAPTTLGDGQHRSALNTYYSLTASTLSTFALSALVGRDG
                     RLDMVHIQNAALAGGVVVGTSAEMMLTPFGALVAGFLAGTVSTLGYKFFTPTLESKLK
                     VQDTCGVHNLHGMPGVLGALLGVLVAGLATHEAYGDGLESVFPLLAKGQRSATSQAMH
                     QLFGLFVTLIFASVGGSLGGLLLRLPFLDAPPDSQCYEDQVYWEVPGEHEDLAQGPLR
                     AEELETQA"
     misc_feature    274..1311
                     /gene="RHBG"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 cgagtgaaac ttgcccggcc cgcccgttga gtgtctccca gggccgcgct ccaggagccc
       61 tagccggagc cggagactcg cagcttctat cccatggccg ggtctccccg ccgcaccgcg
      121 ggccggcgac tgcagctgcc cctgctgtgc ctcctcctcc agggcgccac cgccatcctc
      181 tttgcggtct ttgtccgcta caaccatgaa accgacgctg ccctctggca ctggcacaac
      241 cacagtaacg cggacaatga attttacttt cgctacccaa gcttccagga tgtgcacacc
      301 atgatcttcg tgggcttcgg cttcctcatg gtcttcctgc agcgctacgg cttcagcagc
      361 gtgggcttca ccttcctctc ggccgccttt gccctgcagt ggtccacact cgtccagggg
      421 ttcttccact ccttccaccg tggccacatc catgtaggcg tagagagcat gatcaatgct
      481 gacttctgcg ctggggctgt tcttatctcc tttggtgcca tactgggcaa gactgggccg
      541 gctcagcttc tgctcatggc cctgctggag gtggtgctgt ttggcctcaa cgagtttgtg
      601 ctccttagtc tcctcagggt gaaggatgca ggaggctcca tgactattca cgcttttggt
      661 gcctacttcg ggctggtcct ctccagggtc ctctataggc cccagctgga gaagagcaag
      721 catcgccagg gctccgtcta ccattcggac ctctttgcca tgattgggac catcttccta
      781 tggatcttct ggcctagttt caactctgca cccactacgc tgggggatgg gcagcatcgg
      841 tcggctctca acacgtacta ctccttgact gccagcaccc tcagcacctt tgccttgtca
      901 gcccttgtcg ggagggatgg gcggctggac atggtccaca tccagaatgc cgcactggcc
      961 ggaggggttg tggtggggac atcggctgaa atgatgctga caccctttgg ggctctggta
     1021 gctggcttcc tggctgggac cgtctccaca ctggggtaca agttcttcac gcccaccctt
     1081 gagtcaaaac tcaaagtcca agacacgtgc ggtgtccaca acctccacgg gatgcctggg
     1141 gtcctgggag cactcttggg ggtccttgtg gctggactgg ccacccatga agcttacgga
     1201 gatggcctag agagcgtgtt tccactccta gccaagggcc agcgcagcgc gacgtctcag
     1261 gccatgcacc agctcttcgg actgtttgtc acactgatat ttgcctctgt gggtgggagc
     1321 cttggagggc tcctgctgag gctgcccttc ttggacgccc cgccagactc ccagtgctac
     1381 gaggaccagg tttactggga ggtgcctggg gagcatgagg atttagccca gggacctctg
     1441 agggcagagg aactggagac tcaggcctaa cttgcttcca ggccttgaaa ggacgctctc
     1501 cttttagaat atgatggctg gctaccgttg ggaagctttt cttttctagt tcccatcact
     1561 tctgctgcaa gaaagaagac aggagccgga aggagcctcc ttaccatagg cagcattggg
     1621 ggaggggctg taactagtgt ggtgagggga gagcctcaca cagccccacc ccactgcccc
     1681 acgccctgca agtgaggcac ccaagtgact gctgatccac tggaccagca tcactccgtt
     1741 acagtgaagc ctgagccagg gcctggctct ctgagggtga taaataccac ggtcaccgag
     1801 gac
//
LOCUS       XM_032605774            1729 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh family B glycoprotein (RHBG),
            transcript variant X3, mRNA.
ACCESSION   XM_032605774
VERSION     XM_032605774.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1729
                     /gene="RHBG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740281"
     CDS             93..1391
                     /gene="RHBG"
                     /codon_start=1
                     /product="ammonium transporter Rh type B isoform X3"
                     /protein_id="XP_032461665.1"
                     /db_xref="GeneID:116740281"
                     /translation="MAGSPRRTAGRRLQLPLLCLLLQGATAILFAVFVRYNHETDAAL
                     WHWHNHSNADNEFYFRYPSFQDVHTMIFVGFGFLMVFLQRYGFSSVGFTFLSAAFALQ
                     WSTLVQGFFHSFHRGHIHTGPAQLLLMALLEVVLFGLNEFVLLSLLRVKDAGGSMTIH
                     AFGAYFGLVLSRVLYRPQLEKSKHRQGSVYHSDLFAMIGTIFLWIFWPSFNSAPTTLG
                     DGQHRSALNTYYSLTASTLSTFALSALVGRDGRLDMVHIQNAALAGGVVVGTSAEMML
                     TPFGALVAGFLAGTVSTLGYKFFTPTLESKLKVQDTCGVHNLHGMPGVLGALLGVLVA
                     GLATHEAYGDGLESVFPLLAKGQRSATSQAMHQLFGLFVTLIFASVGGSLGGLLLRLP
                     FLDAPPDSQCYEDQVYWEVPGEHEDLAQGPLRAEELETQA"
     misc_feature    273..1232
                     /gene="RHBG"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 gagtgaaact tgcccggccc gcccgttgag tgtctcccag ggccgcgctc caggagccct
       61 agccggagcc ggagactcgc agcttctatc ccatggccgg gtctccccgc cgcaccgcgg
      121 gccggcgact gcagctgccc ctgctgtgcc tcctcctcca gggcgccacc gccatcctct
      181 ttgcggtctt tgtccgctac aaccatgaaa ccgacgctgc cctctggcac tggcacaacc
      241 acagtaacgc ggacaatgaa ttttactttc gctacccaag cttccaggat gtgcacacca
      301 tgatcttcgt gggcttcggc ttcctcatgg tcttcctgca gcgctacggc ttcagcagcg
      361 tgggcttcac cttcctctcg gccgcctttg ccctgcagtg gtccacactc gtccaggggt
      421 tcttccactc cttccaccgt ggccacatcc atactgggcc ggctcagctt ctgctcatgg
      481 ccctgctgga ggtggtgctg tttggcctca acgagtttgt gctccttagt ctcctcaggg
      541 tgaaggatgc aggaggctcc atgactattc acgcttttgg tgcctacttc gggctggtcc
      601 tctccagggt cctctatagg ccccagctgg agaagagcaa gcatcgccag ggctccgtct
      661 accattcgga cctctttgcc atgattggga ccatcttcct atggatcttc tggcctagtt
      721 tcaactctgc acccactacg ctgggggatg ggcagcatcg gtcggctctc aacacgtact
      781 actccttgac tgccagcacc ctcagcacct ttgccttgtc agcccttgtc gggagggatg
      841 ggcggctgga catggtccac atccagaatg ccgcactggc cggaggggtt gtggtgggga
      901 catcggctga aatgatgctg acaccctttg gggctctggt agctggcttc ctggctggga
      961 ccgtctccac actggggtac aagttcttca cgcccaccct tgagtcaaaa ctcaaagtcc
     1021 aagacacgtg cggtgtccac aacctccacg ggatgcctgg ggtcctggga gcactcttgg
     1081 gggtccttgt ggctggactg gccacccatg aagcttacgg agatggccta gagagcgtgt
     1141 ttccactcct agccaagggc cagcgcagcg cgacgtctca ggccatgcac cagctcttcg
     1201 gactgtttgt cacactgata tttgcctctg tgggtgggag ccttggaggg ctcctgctga
     1261 ggctgccctt cttggacgcc ccgccagact cccagtgcta cgaggaccag gtttactggg
     1321 aggtgcctgg ggagcatgag gatttagccc agggacctct gagggcagag gaactggaga
     1381 ctcaggccta acttgcttcc aggccttgaa aggacgctct ccttttagaa tatgatggct
     1441 ggctaccgtt gggaagcttt tcttttctag ttcccatcac ttctgctgca agaaagaaga
     1501 caggagccgg aaggagcctc cttaccatag gcagcattgg gggaggggct gtaactagtg
     1561 tggtgagggg agagcctcac acagccccac cccactgccc cacgccctgc aagtgaggca
     1621 cccaagtgac tgctgatcca ctggaccagc atcactccgt tacagtgaag cctgagccag
     1681 ggcctggctc tctgagggtg ataaatacca cggtcaccga ggactctca
//
LOCUS       XM_032605783            1677 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh family B glycoprotein (RHBG),
            transcript variant X4, mRNA.
ACCESSION   XM_032605783
VERSION     XM_032605783.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1677
                     /gene="RHBG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740281"
     CDS             95..1339
                     /gene="RHBG"
                     /codon_start=1
                     /product="ammonium transporter Rh type B isoform X4"
                     /protein_id="XP_032461674.1"
                     /db_xref="GeneID:116740281"
                     /translation="MAGSPRRTAGRRLQLPLLCLLLQGATAILFAVFVRYNHETDAAL
                     WHWHNHSNADNEFYFRYPSFQDVHTMIFVGFGFLMVFLQRYGFSSVGFTFLSAAFALQ
                     WSTLVQGFFHSFHRGHIHVGVERLGRLSFCSWPCWRWCCLASTSLCSLVSSGVLYRPQ
                     LEKSKHRQGSVYHSDLFAMIGTIFLWIFWPSFNSAPTTLGDGQHRSALNTYYSLTAST
                     LSTFALSALVGRDGRLDMVHIQNAALAGGVVVGTSAEMMLTPFGALVAGFLAGTVSTL
                     GYKFFTPTLESKLKVQDTCGVHNLHGMPGVLGALLGVLVAGLATHEAYGDGLESVFPL
                     LAKGQRSATSQAMHQLFGLFVTLIFASVGGSLGGLLLRLPFLDAPPDSQCYEDQVYWE
                     VPGEHEDLAQGPLRAEELETQA"
     misc_feature    275..1180
                     /gene="RHBG"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 tcgagtgaaa cttgcccggc ccgcccgttg agtgtctccc agggccgcgc tccaggagcc
       61 ctagccggag ccggagactc gcagcttcta tcccatggcc gggtctcccc gccgcaccgc
      121 gggccggcga ctgcagctgc ccctgctgtg cctcctcctc cagggcgcca ccgccatcct
      181 ctttgcggtc tttgtccgct acaaccatga aaccgacgct gccctctggc actggcacaa
      241 ccacagtaac gcggacaatg aattttactt tcgctaccca agcttccagg atgtgcacac
      301 catgatcttc gtgggcttcg gcttcctcat ggtcttcctg cagcgctacg gcttcagcag
      361 cgtgggcttc accttcctct cggccgcctt tgccctgcag tggtccacac tcgtccaggg
      421 gttcttccac tccttccacc gtggccacat ccatgtaggc gtagagagac tgggccggct
      481 cagcttctgc tcatggccct gctggaggtg gtgctgtttg gcctcaacga gtttgtgctc
      541 cttagtctcc tcaggggtcc tctataggcc ccagctggag aagagcaagc atcgccaggg
      601 ctccgtctac cattcggacc tctttgccat gattgggacc atcttcctat ggatcttctg
      661 gcctagtttc aactctgcac ccactacgct gggggatggg cagcatcggt cggctctcaa
      721 cacgtactac tccttgactg ccagcaccct cagcaccttt gccttgtcag cccttgtcgg
      781 gagggatggg cggctggaca tggtccacat ccagaatgcc gcactggccg gaggggttgt
      841 ggtggggaca tcggctgaaa tgatgctgac accctttggg gctctggtag ctggcttcct
      901 ggctgggacc gtctccacac tggggtacaa gttcttcacg cccacccttg agtcaaaact
      961 caaagtccaa gacacgtgcg gtgtccacaa cctccacggg atgcctgggg tcctgggagc
     1021 actcttgggg gtccttgtgg ctggactggc cacccatgaa gcttacggag atggcctaga
     1081 gagcgtgttt ccactcctag ccaagggcca gcgcagcgcg acgtctcagg ccatgcacca
     1141 gctcttcgga ctgtttgtca cactgatatt tgcctctgtg ggtgggagcc ttggagggct
     1201 cctgctgagg ctgcccttct tggacgcccc gccagactcc cagtgctacg aggaccaggt
     1261 ttactgggag gtgcctgggg agcatgagga tttagcccag ggacctctga gggcagagga
     1321 actggagact caggcctaac ttgcttccag gccttgaaag gacgctctcc ttttagaata
     1381 tgatggctgg ctaccgttgg gaagcttttc ttttctagtt cccatcactt ctgctgcaag
     1441 aaagaagaca ggagccggaa ggagcctcct taccataggc agcattgggg gaggggctgt
     1501 aactagtgtg gtgaggggag agcctcacac agccccaccc cactgcccca cgccctgcaa
     1561 gtgaggcacc caagtgactg ctgatccact ggaccagcat cactccgtta cagtgaagcc
     1621 tgagccaggg cctggctctc tgagggtgat aaataccacg gtcaccgagg actctca
//
LOCUS       XM_032605789            1666 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh family B glycoprotein (RHBG),
            transcript variant X5, mRNA.
ACCESSION   XM_032605789
VERSION     XM_032605789.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1666
                     /gene="RHBG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740281"
     CDS             93..1328
                     /gene="RHBG"
                     /codon_start=1
                     /product="ammonium transporter Rh type B isoform X5"
                     /protein_id="XP_032461680.1"
                     /db_xref="GeneID:116740281"
                     /translation="MAGSPRRTAGRRLQLPLLCLLLQGATAILFAVFVRYNHETDAAL
                     WHWHNHSNADNEFYFRYPSFQDVHTMIFVGFGFLMVFLQRYGFSSVGFTFLSAAFALQ
                     WSTLVQGFFHSFHRGHIHVGVESLLRVKDAGGSMTIHAFGAYFGLVLSRVLYRPQLEK
                     SKHRQGSVYHSDLFAMIGTIFLWIFWPSFNSAPTTLGDGQHRSALNTYYSLTASTLST
                     FALSALVGRDGRLDMVHIQNAALAGGVVVGTSAEMMLTPFGALVAGFLAGTVSTLGYK
                     FFTPTLESKLKVQDTCGVHNLHGMPGVLGALLGVLVAGLATHEAYGDGLESVFPLLAK
                     GQRSATSQAMHQLFGLFVTLIFASVGGSLGGLLLRLPFLDAPPDSQCYEDQVYWEVPG
                     EHEDLAQGPLRAEELETQA"
     misc_feature    273..1169
                     /gene="RHBG"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 gagtgaaact tgcccggccc gcccgttgag tgtctcccag ggccgcgctc caggagccct
       61 agccggagcc ggagactcgc agcttctatc ccatggccgg gtctccccgc cgcaccgcgg
      121 gccggcgact gcagctgccc ctgctgtgcc tcctcctcca gggcgccacc gccatcctct
      181 ttgcggtctt tgtccgctac aaccatgaaa ccgacgctgc cctctggcac tggcacaacc
      241 acagtaacgc ggacaatgaa ttttactttc gctacccaag cttccaggat gtgcacacca
      301 tgatcttcgt gggcttcggc ttcctcatgg tcttcctgca gcgctacggc ttcagcagcg
      361 tgggcttcac cttcctctcg gccgcctttg ccctgcagtg gtccacactc gtccaggggt
      421 tcttccactc cttccaccgt ggccacatcc atgtaggcgt agagagtctc ctcagggtga
      481 aggatgcagg aggctccatg actattcacg cttttggtgc ctacttcggg ctggtcctct
      541 ccagggtcct ctataggccc cagctggaga agagcaagca tcgccagggc tccgtctacc
      601 attcggacct ctttgccatg attgggacca tcttcctatg gatcttctgg cctagtttca
      661 actctgcacc cactacgctg ggggatgggc agcatcggtc ggctctcaac acgtactact
      721 ccttgactgc cagcaccctc agcacctttg ccttgtcagc ccttgtcggg agggatgggc
      781 ggctggacat ggtccacatc cagaatgccg cactggccgg aggggttgtg gtggggacat
      841 cggctgaaat gatgctgaca ccctttgggg ctctggtagc tggcttcctg gctgggaccg
      901 tctccacact ggggtacaag ttcttcacgc ccacccttga gtcaaaactc aaagtccaag
      961 acacgtgcgg tgtccacaac ctccacggga tgcctggggt cctgggagca ctcttggggg
     1021 tccttgtggc tggactggcc acccatgaag cttacggaga tggcctagag agcgtgtttc
     1081 cactcctagc caagggccag cgcagcgcga cgtctcaggc catgcaccag ctcttcggac
     1141 tgtttgtcac actgatattt gcctctgtgg gtgggagcct tggagggctc ctgctgaggc
     1201 tgcccttctt ggacgccccg ccagactccc agtgctacga ggaccaggtt tactgggagg
     1261 tgcctgggga gcatgaggat ttagcccagg gacctctgag ggcagaggaa ctggagactc
     1321 aggcctaact tgcttccagg ccttgaaagg acgctctcct tttagaatat gatggctggc
     1381 taccgttggg aagcttttct tttctagttc ccatcacttc tgctgcaaga aagaagacag
     1441 gagccggaag gagcctcctt accataggca gcattggggg aggggctgta actagtgtgg
     1501 tgaggggaga gcctcacaca gccccacccc actgccccac gccctgcaag tgaggcaccc
     1561 aagtgactgc tgatccactg gaccagcatc actccgttac agtgaagcct gagccagggc
     1621 ctggctctct gagggtgata aataccacgg tcaccgagga ctctca
//
LOCUS       XR_004345856            1110 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116740300
            (LOC116740300), ncRNA.
ACCESSION   XR_004345856
VERSION     XR_004345856.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1110
                     /gene="LOC116740300"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116740300"
     ncRNA           1..1110
                     /ncRNA_class="lncRNA"
                     /gene="LOC116740300"
                     /product="uncharacterized LOC116740300"
                     /db_xref="GeneID:116740300"
ORIGIN      
        1 gaagtctgag atcagcatgc cagcatgatc tgtttctgga ctgagggact tccctggctg
       61 tgagcgctga tcaacagtca caaccatggc tgtactattg aagacgtact acatgtcacg
      121 tgatttgtgg accttaatcc tcacaacaac ccctgtgggg ttattactct tcttatctcc
      181 atgtaacaga tgaggagact gaggttcaag gcatggaatt gatcacagac ccccaacagg
      241 atcgcgagaa gtgcgccact gaagcagagc tgctgtcagg ccttgggaac tgagactaca
      301 tctcatccat cgtggcatcc tgagaacaga gcatgattct actctgtttg atggtgatgg
      361 aacgtggagg atattcctcc agaatctggc acatagcgta gcacctggca catagcagga
      421 atgcaaacaa aatgtattac gtgagtggaa aacattttaa tttgatatca ctgccttctg
      481 acaaacattt ttcccaaggt attgtcattt tcattttaca gatgaagaaa ccttaacaaa
      541 cacaagtaat ctgattttgg cgatctttta catggaagtt actttggtga gcctctgggg
      601 acagaaagcc atatttgatt ttaccattgg ctgtatgtaa gcacaacaat attttgtatg
      661 gtgccactgt ggctgtggtt tttgggaaaa aatgaggtct gggattttcc acccccagaa
      721 aatgggtgct gaggagttct ctagtatagt ttctttttct agtttcatac cagactgtta
      781 gacaaaaagg aatccccctg ttccacctta cctgtgaaat taggccagat ctcatggtaa
      841 gcctcacttc ctctgggaag ccttcgctga tcacccccag catgggttgg gtccccatag
      901 gacctgtctc ccccactatc accttggcaa tgcgattgcc tgctgattca cttgcatccg
      961 ccccagatag acctcccacc cccacccagg gatatatctc gtcccactgg atctccagcc
     1021 cctagcacca tgtctggcac acagtaggtg ctcaatatat gtttgttgaa tgaatgaagg
     1081 ctctgccttc tcccaaatct cctctattca
//
LOCUS       XM_032605811             927 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus olfactory receptor 10K1 (LOC116740305),
            mRNA.
ACCESSION   XM_032605811
VERSION     XM_032605811.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..927
                     /gene="LOC116740305"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 Proteins"
                     /db_xref="GeneID:116740305"
     CDS             1..927
                     /gene="LOC116740305"
                     /codon_start=1
                     /product="olfactory receptor 10K1"
                     /protein_id="XP_032461702.1"
                     /db_xref="GeneID:116740305"
                     /translation="MEWVNETLMREFVFLGFSSLAGLQRLLFFVFLLIYLFTLGTNAI
                     IIFTIVLDRALHTPMYFFLAGLSCSETCYTFILVPKMLVDLLAQKKTISFLGCSIQMF
                     SFLFSGCSHSFLLAVMGYDHYVAICNPLHYTVLMGYGVCVGLVAAACACGFTVSLVTT
                     SLVFHLPFHSSNQLHHFFCDISPVLKLASHHSHLSQLVIFMLGVFALIIPLLLILVSY
                     IHIISAILKIPSSVGRYKAFSTCASHLIVVIVHYGCASFIYLRPKSNYSSSQDTLISV
                     SYTILTPLFNLMVYSLRNKEFKSATRRTMVQT"
     misc_feature    76..900
                     /gene="LOC116740305"
                     /note="olfactory receptor subfamily 10A and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; Region:
                     7tmA_OR10A-like; cd15225"
                     /db_xref="CDD:320353"
     misc_feature    76..156
                     /gene="LOC116740305"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320353"
     misc_feature    175..255
                     /gene="LOC116740305"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320353"
     misc_feature    order(241..243,250..255,289..306,310..315,322..324,
                     457..459,463..477,583..585,592..600,604..612,616..621,
                     754..756,763..768,772..777,784..786,802..807,811..819,
                     826..828,835..840)
                     /gene="LOC116740305"
                     /note="putative ligand binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:320353"
     misc_feature    289..381
                     /gene="LOC116740305"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320353"
     misc_feature    418..483
                     /gene="LOC116740305"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320353"
     misc_feature    583..675
                     /gene="LOC116740305"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320353"
     misc_feature    694..786
                     /gene="LOC116740305"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320353"
     misc_feature    805..882
                     /gene="LOC116740305"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320353"
ORIGIN      
        1 atggaatggg tcaatgagac cttgatgaga gagtttgtct tccttggctt ctcatctctg
       61 gctgggctgc agcggctgct cttctttgtc ttcctgctca tctacctgtt caccctgggc
      121 acaaatgcca tcatcatttt caccattgtc ctcgacagag ccctccatac ccctatgtac
      181 ttcttccttg ctggactctc ctgttctgag acttgttaca ccttcattct tgtacccaag
      241 atgctggttg acctgctggc ccagaagaag accatctcct tcttaggctg ttctatccag
      301 atgttttcct tcctcttctc aggttgctct cactccttcc tgctggcagt catgggttat
      361 gatcactatg tggccatctg taaccctctg cattacacag tgctcatggg ttatggggtg
      421 tgtgtgggac ttgtggctgc tgcctgtgct tgtggcttca ctgtctcact ggtcaccacc
      481 tccctggtat ttcacttgcc attccactcc tctaaccaac tacaccactt cttctgtgac
      541 atttctcctg ttctcaagct agcatctcat cactctcacc tcagtcagtt ggtcatattc
      601 atgcttggtg tgtttgcctt gattattcca ctgttactta tcctggtttc ctatatccat
      661 ataatctctg ccattctaaa aatcccatcc tctgttggaa gatacaaagc cttctctact
      721 tgtgcctccc atctcattgt ggtaattgtt cattatggtt gtgcctcttt catctactta
      781 aggcccaaat ccaattactc ttcaagtcaa gacaccctaa tatctgtgtc ttataccatc
      841 ctcactccat tgttcaatct aatggtttac agtctgagga ataaggaatt caaatcagcc
      901 actcgaagaa caatggtcca gacttaa
//
LOCUS       XM_032605824             849 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hes family bHLH transcription factor 3
            (HES3), mRNA.
ACCESSION   XM_032605824
VERSION     XM_032605824.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 37% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                VOSU01000011.1     4497695-4497777
            84-163              VOSU01000011.1     4497876-4497955
            164-450             VOSU01000011.1     4498330-4498616
            451-510             VOSU01000011.1     4498618-4498677
            511-511             "N"                1-1
            512-536             VOSU01000011.1     4498678-4498702
            537-849             VOSU01000011.1     4499012-4499324
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..849
                     /gene="HES3"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein"
                     /db_xref="GeneID:116740311"
     CDS             1..849
                     /gene="HES3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: transcription factor HES-3"
                     /protein_id="XP_032461715.1"
                     /db_xref="GeneID:116740311"
                     /translation="MEKKRRARINVSLEQLRSLLEKHYSHQVRKRKLEKADILELSVK
                     YMKSLQNSVQGLWPVPSGAEYPSGFRGCLPGVSQPLRREEEGGATVLRCPLAHERAGG
                     STMDSASPGPEAPARRGPGAPPVWAPAPAAAGSRSPPPRLLLSGGLPGSSTSIPTPQS
                     ASRRFAESPGXGLRLWRPWAPGGQLVPAPRPRRGGKVAVRSSTERTPRSEENRCPAPA
                     HSAGPGRPVPTAQSAPGPAPPARGPHPIPILDPLCFQGSPPPPHAARPTRWRTLLSLP
                     SRKPPP"
     misc_feature    1..165
                     /gene="HES3"
                     /note="basic helix-loop-helix-orange (bHLH-O) domain found
                     in transcription factor HES-3 and similar proteins;
                     Region: bHLH-O_HES3; cd18933"
                     /db_xref="CDD:381503"
     misc_feature    order(7..9,13..18,28..30,100..105)
                     /gene="HES3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381503"
     misc_feature    order(13..18,22..30,34..39,43..48,55..60,67..69,94..96,
                     100..108,115..120,124..129,133..141,145..150,157..159)
                     /gene="HES3"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381503"
ORIGIN      
        1 atggagaaga agcgacgggc gcgcattaat gtgtcgctgg agcagctcag atcgttgcta
       61 gagaaacact actcgcacca ggttcggaaa cgcaagttgg agaaggcaga tatactggag
      121 ctgagcgtca agtacatgaa aagccttcag aactcggtgc aagggctctg gccggtcccc
      181 agcggagccg agtacccgtc gggcttccgc ggctgtctac cgggcgttag ccagcctctg
      241 cggcgcgaag aggagggcgg cgcgacggtt ctgcgctgcc ccctggcgca cgagcgcgcg
      301 ggtggcagca ccatggacag cgccagtccc ggccccgagg cacccgcgcg gcgcggcccc
      361 ggcgcccccc cagtttgggc ccctgctccg gccgccgccg gctcgcggtc tccgccaccc
      421 cggctcctct tatctggagg tctccccggt agttccacca gcatccccac gccgcagtcg
      481 gcgtctcgcc gcttcgccga gagcccgggg nccgggctgc gcttgtggcg gccctgggcc
      541 cctggcgggc agctcgtccc cgccccgcgg ccgcgccgcg gtgggaaggt cgccgtccgc
      601 agcagcacag agcggacccc tcgcagcgag gagaatcgct gccccgcccc tgcccattca
      661 gccggcccgg gacgcccggt tcccacggca caaagcgcgc caggtcccgc acccccggca
      721 aggggccccc atcccatccc catcctggac ccactctgct tccagggatc cccaccccct
      781 ccgcacgcgg cgcggcccac ccgctggcgc acgctcctaa gtctgccctc tcggaagccc
      841 cctccttag
//
LOCUS       XM_032605836            2986 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADAM metallopeptidase domain 15 (ADAM15),
            transcript variant X1, mRNA.
ACCESSION   XM_032605836
VERSION     XM_032605836.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2986
                     /gene="ADAM15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740319"
     CDS             105..2705
                     /gene="ADAM15"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 15 isoform X1"
                     /protein_id="XP_032461727.1"
                     /db_xref="GeneID:116740319"
                     /translation="MRLALLWALGLLGAGSPLPSRPLPDIGGTEEKQARPERALNGSS
                     EPQILQDNLTLSLAEALQTSLPEALRIKLELDGESHILELLQNRELVSGRPTLVWYQP
                     DGTRVVSEGHTLENCCYHGKVQGHADSWVSVCTCSGLRGLVILSPERSYSLELGPGDL
                     QGPPVISRLQDLLLPGHTCALSWPASVPTQAPPEQPLGQRHLLRWRRDVVTETKIVEL
                     VIVADRSEVQRYRDFQNLLNRTLEVALLLDTFFRPLNVRVALVGLEAWTQRDLIEISQ
                     HPGVTLDSFLRWRRTDLLPRLPHDSAQLVTATSFSGPMVGMAIQNSICSPEFSGGVNM
                     DHSTSILGVASSIAHELGHSLGLGHDSPGNSCPCPGPAPAKSCIMEASTDFLPGLNFS
                     NCSRQALEKALLGGMGSCLFERLSGLPSTASVCGNMLVEPGEQCDCGFPDDCTDPCCD
                     YFTCQLRPGAQCASDGLCCQNCQLRPASWQCRSTRGDCDLPEFCPGDSSQCPPDVSLG
                     DGEPCAGGQAVCMQGRCTSYAQQCQALWGPGAQPAAPLCLLTANTRGDAFGSCGRSPD
                     GSYVSCAPRDAVCGQLQCQGGRAQPLLGSARDLHWEMLEANGTQLELNCSWVHLDLGN
                     DVAQPLMTLPGTACGPGLVCVDHQCQPVEILGTQECRSKCHGHGVCDSNRRCHCEEGW
                     APPDCTTHIRATSSLTTGLPLSLLLLLVLVLLGASYWHRARLRQRLCQLKGPSCQYRA
                     AQSGPPERPGPPQRALLMPGAKQASALGFPAPPSRPLPPDPVPKRLQAELADRPNPPT
                     RPLPADPVVRYPKSQGPTKPPPPRKPLPTDPQGQHPSADLPGPGAGILPSVVPSRPAP
                     PPPAVSSLYL"
     misc_feature    288..566
                     /gene="ADAM15"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    744..1340
                     /gene="ADAM15"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(1149..1154,1161..1163,1179..1181)
                     /gene="ADAM15"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1395..1619
                     /gene="ADAM15"
                     /note="Homologues of snake disintegrins; Region: DISIN;
                     smart00050"
                     /db_xref="CDD:214490"
     misc_feature    1629..2060
                     /gene="ADAM15"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 ggctgcgccg agccgctagg tgagcgaagc agacccggca gccgcggctc ctcggcactc
       61 cgcccagcac ctgctgccct cgcccgaccc cgggcgccgc tgccatgcgg ctggcgctgc
      121 tctgggccct ggggctcctg ggggcgggca gccctctgcc ctcccggccg ctcccagata
      181 taggtggcac tgaggagaag caggcaaggc cagagagggc cctgaatggg tcttcggagc
      241 cccagatcct tcaggacaac ctcacgctca gcctagcaga ggcacttcag accagtctgc
      301 ctgaggcttt gcggatcaaa ttggagttgg atggtgagag tcacatcctg gagctgctac
      361 agaataggga gctagtctca ggccgtccaa ccctggtgtg gtaccagcct gatggcaccc
      421 gggtggtcag tgagggacac actctggaga actgctgcta ccatggaaaa gtgcagggcc
      481 acgccgactc ctgggtctct gtctgcacct gctccgggct caggggcttg gtgatcctgt
      541 ccccagagag aagctactcc ctggagctgg ggcctgggga cctccagggt ccccctgtta
      601 tctcccggct ccaagacctc ctcctgccag gccacacttg tgccctgagc tggcctgcat
      661 ctgtgcccac tcaggctcca ccagagcagc ccctgggaca gcgtcacctt ctccggtgga
      721 ggcgggacgt ggtgacagag accaagattg ttgagctggt gattgtggct gaccgttccg
      781 aggtccagag gtaccgggac ttccagaacc tgctgaaccg caccctggaa gtggccctcc
      841 tcctggacac attcttcagg cctctgaatg tccgggtggc gctcgtgggc ctggaggcct
      901 ggacccagcg tgacctgata gagataagcc agcacccagg tgtcacacta gacagcttcc
      961 tccgctggcg ccggacagac ctgctgcctc ggttgcccca cgacagtgcc cagctggtga
     1021 ctgccacttc attctccggg cccatggtgg gcatggccat tcagaactcc atctgttctc
     1081 ctgaattctc aggaggtgtg aacatggacc actccacaag catcctggga gtcgcctcct
     1141 caatagccca cgagttgggc cacagcctag gcctgggcca tgactcacct gggaatagct
     1201 gcccctgtcc aggtccagcc ccagccaaga gctgcatcat ggaggcctca acagacttcc
     1261 tgccaggcct gaacttcagc aactgcagcc gacaggccct ggaaaaagcc ctcctgggtg
     1321 ggatgggcag ctgcctcttt gaacggctct ccggtctgcc ctctacggcc agtgtctgcg
     1381 gaaatatgtt ggtggagccc ggcgagcagt gtgactgtgg cttcccagat gactgcactg
     1441 atccttgctg tgattacttc acctgccagc tgaggccagg ggcacagtgc gcgtccgatg
     1501 gactctgttg tcaaaattgc cagctgcgcc cggccagctg gcagtgccgc tctaccagag
     1561 gtgactgcga cttgcccgag ttctgcccag gagacagctc ccagtgcccc cctgatgtca
     1621 gcctggggga cggtgagccg tgtgctggtg gacaggctgt gtgcatgcaa ggacgctgta
     1681 cctcctatgc ccagcagtgc caggctctct gggggcctgg ggcccagccc gccgcgccac
     1741 tttgcctcct tactgccaac actcgggggg acgcctttgg gagctgtggg cgcagccccg
     1801 atggcagcta tgtgtcctgt gcccctagag atgccgtttg tgggcagctc cagtgccagg
     1861 gagggagggc ccagcctctg ctgggctcag cccgggatct tcactgggag atgctggaag
     1921 ccaacgggac ccagctggaa ctgaactgta gctgggtaca cctggacctg ggcaacgacg
     1981 tggcccagcc cctgatgact ctgcctggca cagcctgtgg ccccggcctg gtgtgcgtcg
     2041 accatcaatg ccaaccggtg gagatcctgg ggacacagga atgtcgaagc aaatgccatg
     2101 ggcatggggt ctgcgacagc aacagacgct gccactgtga ggagggttgg gcgcccccag
     2161 actgcaccac ccacatcaga gcaaccagct ccctgaccac agggctgccc ctcagcctcc
     2221 tgttgttgct ggtcctggtg ctgcttggtg ccagctactg gcaccgtgcc cgcctgcgcc
     2281 agagactctg ccagcttaag ggacccagct gccaatacag ggcagcccag tctggtcccc
     2341 ctgaacgccc aggacccccg cagagggctc tgctgatgcc aggtgccaag caggctagtg
     2401 ctcttggctt cccggcccct ccctccaggc cgctgcctcc tgaccctgtg cccaagagac
     2461 tccaggctga gctggctgac cgacccaatc cccccacccg ccctctgccc gctgacccgg
     2521 tggtgaggta cccgaagtct caggggccca ccaagcctcc acccccgaga aaaccactgc
     2581 ctactgaccc tcagggccag cacccttcgg ctgacctgcc tggccctgga gctggaatcc
     2641 tgccctcagt ggtaccctcc aggcctgcgc cgccgccccc agcagtgtcc tcgctctacc
     2701 tctgacctct cctgaggttc cgctgcctcc aacctggact taggacttca acaggcagac
     2761 ccctggagtc ccttgcggtg accgaaggag ctggggcctg gacactacgg aacaggagtc
     2821 ttaaaacact gacaccaggc acttccactt gctgtcgagc agcaccctgg ggacccgccc
     2881 acgcagtggc atcttggggt tggggagtgt ctgggagctg gacggagctg agggaggtgc
     2941 gcacagcctg tctctgcaga actgcaataa aagtgaggtc ttggga
//
LOCUS       XM_032605846            2983 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADAM metallopeptidase domain 15 (ADAM15),
            transcript variant X2, mRNA.
ACCESSION   XM_032605846
VERSION     XM_032605846.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2983
                     /gene="ADAM15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740319"
     CDS             105..2702
                     /gene="ADAM15"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 15 isoform X2"
                     /protein_id="XP_032461737.1"
                     /db_xref="GeneID:116740319"
                     /translation="MRLALLWALGLLGAGSPLPSRPLPDIGGTEEKQARPERALNGSS
                     EPQILQDNLTLSLAEALQTSLPEALRIKLELDGESHILELLQNRELVSGRPTLVWYQP
                     DGTRVVSEGHTLENCCYHGKVQGHADSWVSVCTCSGLRGLVILSPERSYSLELGPGDL
                     QGPPVISRLQDLLLPGHTCALSWPASVPTQAPPEQPLGQRHLLRWRRDVVTETKIVEL
                     VIVADRSEVQRYRDFQNLLNRTLEVALLLDTFFRPLNVRVALVGLEAWTQRDLIEISQ
                     HPGVTLDSFLRWRRTDLLPRLPHDSAQLVTATSFSGPMVGMAIQNSICSPEFSGGVNM
                     DHSTSILGVASSIAHELGHSLGLGHDSPGNSCPCPGPAPAKSCIMEASTDFLPGLNFS
                     NCSRQALEKALLGGMGSCLFERLSGLPSTASVCGNMLVEPGEQCDCGFPDDCTDPCCD
                     YFTCQLRPGAQCASDGLCCQNCQLRPASWQCRSTRGDCDLPEFCPGDSSQCPPDVSLG
                     DGEPCAGGQAVCMQGRCTSYAQQCQALWGPGAQPAAPLCLLTANTRGDAFGSCGRSPD
                     GSYVSCAPRDAVCGQLQCQGGRAQPLLGSARDLHWEMLEANGTQLELNCSWVHLDLGN
                     DVAQPLMTLPGTACGPGLVCVDHQCQPVEILGTQECRSKCHGHGVCDSNRRCHCEEGW
                     APPDCTTHIRATSSLTTGLPLSLLLLLVLVLLGASYWHRARLRQRLCQLKGPSCQYRA
                     AQSGPPERPGPPQRALLMPGAKASALGFPAPPSRPLPPDPVPKRLQAELADRPNPPTR
                     PLPADPVVRYPKSQGPTKPPPPRKPLPTDPQGQHPSADLPGPGAGILPSVVPSRPAPP
                     PPAVSSLYL"
     misc_feature    288..566
                     /gene="ADAM15"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    744..1340
                     /gene="ADAM15"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(1149..1154,1161..1163,1179..1181)
                     /gene="ADAM15"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1395..1619
                     /gene="ADAM15"
                     /note="Homologues of snake disintegrins; Region: DISIN;
                     smart00050"
                     /db_xref="CDD:214490"
     misc_feature    1629..2060
                     /gene="ADAM15"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 ggctgcgccg agccgctagg tgagcgaagc agacccggca gccgcggctc ctcggcactc
       61 cgcccagcac ctgctgccct cgcccgaccc cgggcgccgc tgccatgcgg ctggcgctgc
      121 tctgggccct ggggctcctg ggggcgggca gccctctgcc ctcccggccg ctcccagata
      181 taggtggcac tgaggagaag caggcaaggc cagagagggc cctgaatggg tcttcggagc
      241 cccagatcct tcaggacaac ctcacgctca gcctagcaga ggcacttcag accagtctgc
      301 ctgaggcttt gcggatcaaa ttggagttgg atggtgagag tcacatcctg gagctgctac
      361 agaataggga gctagtctca ggccgtccaa ccctggtgtg gtaccagcct gatggcaccc
      421 gggtggtcag tgagggacac actctggaga actgctgcta ccatggaaaa gtgcagggcc
      481 acgccgactc ctgggtctct gtctgcacct gctccgggct caggggcttg gtgatcctgt
      541 ccccagagag aagctactcc ctggagctgg ggcctgggga cctccagggt ccccctgtta
      601 tctcccggct ccaagacctc ctcctgccag gccacacttg tgccctgagc tggcctgcat
      661 ctgtgcccac tcaggctcca ccagagcagc ccctgggaca gcgtcacctt ctccggtgga
      721 ggcgggacgt ggtgacagag accaagattg ttgagctggt gattgtggct gaccgttccg
      781 aggtccagag gtaccgggac ttccagaacc tgctgaaccg caccctggaa gtggccctcc
      841 tcctggacac attcttcagg cctctgaatg tccgggtggc gctcgtgggc ctggaggcct
      901 ggacccagcg tgacctgata gagataagcc agcacccagg tgtcacacta gacagcttcc
      961 tccgctggcg ccggacagac ctgctgcctc ggttgcccca cgacagtgcc cagctggtga
     1021 ctgccacttc attctccggg cccatggtgg gcatggccat tcagaactcc atctgttctc
     1081 ctgaattctc aggaggtgtg aacatggacc actccacaag catcctggga gtcgcctcct
     1141 caatagccca cgagttgggc cacagcctag gcctgggcca tgactcacct gggaatagct
     1201 gcccctgtcc aggtccagcc ccagccaaga gctgcatcat ggaggcctca acagacttcc
     1261 tgccaggcct gaacttcagc aactgcagcc gacaggccct ggaaaaagcc ctcctgggtg
     1321 ggatgggcag ctgcctcttt gaacggctct ccggtctgcc ctctacggcc agtgtctgcg
     1381 gaaatatgtt ggtggagccc ggcgagcagt gtgactgtgg cttcccagat gactgcactg
     1441 atccttgctg tgattacttc acctgccagc tgaggccagg ggcacagtgc gcgtccgatg
     1501 gactctgttg tcaaaattgc cagctgcgcc cggccagctg gcagtgccgc tctaccagag
     1561 gtgactgcga cttgcccgag ttctgcccag gagacagctc ccagtgcccc cctgatgtca
     1621 gcctggggga cggtgagccg tgtgctggtg gacaggctgt gtgcatgcaa ggacgctgta
     1681 cctcctatgc ccagcagtgc caggctctct gggggcctgg ggcccagccc gccgcgccac
     1741 tttgcctcct tactgccaac actcgggggg acgcctttgg gagctgtggg cgcagccccg
     1801 atggcagcta tgtgtcctgt gcccctagag atgccgtttg tgggcagctc cagtgccagg
     1861 gagggagggc ccagcctctg ctgggctcag cccgggatct tcactgggag atgctggaag
     1921 ccaacgggac ccagctggaa ctgaactgta gctgggtaca cctggacctg ggcaacgacg
     1981 tggcccagcc cctgatgact ctgcctggca cagcctgtgg ccccggcctg gtgtgcgtcg
     2041 accatcaatg ccaaccggtg gagatcctgg ggacacagga atgtcgaagc aaatgccatg
     2101 ggcatggggt ctgcgacagc aacagacgct gccactgtga ggagggttgg gcgcccccag
     2161 actgcaccac ccacatcaga gcaaccagct ccctgaccac agggctgccc ctcagcctcc
     2221 tgttgttgct ggtcctggtg ctgcttggtg ccagctactg gcaccgtgcc cgcctgcgcc
     2281 agagactctg ccagcttaag ggacccagct gccaatacag ggcagcccag tctggtcccc
     2341 ctgaacgccc aggacccccg cagagggctc tgctgatgcc aggtgccaag gctagtgctc
     2401 ttggcttccc ggcccctccc tccaggccgc tgcctcctga ccctgtgccc aagagactcc
     2461 aggctgagct ggctgaccga cccaatcccc ccacccgccc tctgcccgct gacccggtgg
     2521 tgaggtaccc gaagtctcag gggcccacca agcctccacc cccgagaaaa ccactgccta
     2581 ctgaccctca gggccagcac ccttcggctg acctgcctgg ccctggagct ggaatcctgc
     2641 cctcagtggt accctccagg cctgcgccgc cgcccccagc agtgtcctcg ctctacctct
     2701 gacctctcct gaggttccgc tgcctccaac ctggacttag gacttcaaca ggcagacccc
     2761 tggagtccct tgcggtgacc gaaggagctg gggcctggac actacggaac aggagtctta
     2821 aaacactgac accaggcact tccacttgct gtcgagcagc accctgggga cccgcccacg
     2881 cagtggcatc ttggggttgg ggagtgtctg ggagctggac ggagctgagg gaggtgcgca
     2941 cagcctgtct ctgcagaact gcaataaaag tgaggtcttg gga
//
LOCUS       XM_032605854            2855 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADAM metallopeptidase domain 15 (ADAM15),
            transcript variant X3, mRNA.
ACCESSION   XM_032605854
VERSION     XM_032605854.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2855
                     /gene="ADAM15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 9 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740319"
     CDS             121..2574
                     /gene="ADAM15"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 15 isoform X3"
                     /protein_id="XP_032461745.1"
                     /db_xref="GeneID:116740319"
                     /translation="MRLALLWALGLLGAGSPLPSRPLPDIGGTEEKQARPERALNGSS
                     EPQILQDNLTLSLAEALQTSLPEALRIKLELDGESHILELLQNRELVSGRPTLVWYQP
                     DGTRVVSEGHTLENCCYHGKVQGHADSWVSVCTCSGLRGLVILSPERSYSLELGPGDL
                     QGPPVISRLQDLLLPGHTCALSWPASVPTQAPPEQPLGQRHLLRWRRDVVTETKIVEL
                     VIVADRSEVQRYRDFQNLLNRTLEVALLLDTFFRPLNVRVALVGLEAWTQRDLIEISQ
                     HPGVTLDSFLRWRRTDLLPRLPHDSAQLVTATSFSGPMVGMAIQNSICSPEFSGGVNM
                     DHSTSILGVASSIAHELGHSLGLGHDSPGNSCPCPGPAPAKSCIMEASTDFLPGLNFS
                     NCSRQALEKALLGGMGSCLFERLSGLPSTASVCGNMLVEPGEQCDCGFPDDCTDPCCD
                     YFTCQLRPGAQCASDGLCCQNCQLRPASWQCRSTRGDCDLPEFCPGDSSQCPPDVSLG
                     DGEPCAGGQAVCMQGRCTSYAQQCQALWGPGAQPAAPLCLLTANTRGDAFGSCGRSPD
                     GSYVSCAPRDAVCGQLQCQGGRAQPLLGSARDLHWEMLEANGTQLELNCSWVHLDLGN
                     DVAQPLMTLPGTACGPGLVCVDHQCQPVEILGTQECRSKCHGHGVCDSNRRCHCEEGW
                     APPDCTTHIRATSSLTTGLPLSLLLLLVLVLLGASYWHRARLRQRLCQLKGPSCQYRA
                     AQSGPPERPGPPQRALLMPGAKSQGPTKPPPPRKPLPTDPQGQHPSADLPGPGAGILP
                     SVVPSRPAPPPPAVSSLYL"
     misc_feature    304..582
                     /gene="ADAM15"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    760..1356
                     /gene="ADAM15"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(1165..1170,1177..1179,1195..1197)
                     /gene="ADAM15"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1411..1635
                     /gene="ADAM15"
                     /note="Homologues of snake disintegrins; Region: DISIN;
                     smart00050"
                     /db_xref="CDD:214490"
     misc_feature    1645..2076
                     /gene="ADAM15"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 cggggcgggg cctggtggct gcgccgagcc gctaggtgag cgaagcagac ccggcagccg
       61 cggctcctcg gcactccgcc cagcacctgc tgccctcgcc cgaccccggg cgccgctgcc
      121 atgcggctgg cgctgctctg ggccctgggg ctcctggggg cgggcagccc tctgccctcc
      181 cggccgctcc cagatatagg tggcactgag gagaagcagg caaggccaga gagggccctg
      241 aatgggtctt cggagcccca gatccttcag gacaacctca cgctcagcct agcagaggca
      301 cttcagacca gtctgcctga ggctttgcgg atcaaattgg agttggatgg tgagagtcac
      361 atcctggagc tgctacagaa tagggagcta gtctcaggcc gtccaaccct ggtgtggtac
      421 cagcctgatg gcacccgggt ggtcagtgag ggacacactc tggagaactg ctgctaccat
      481 ggaaaagtgc agggccacgc cgactcctgg gtctctgtct gcacctgctc cgggctcagg
      541 ggcttggtga tcctgtcccc agagagaagc tactccctgg agctggggcc tggggacctc
      601 cagggtcccc ctgttatctc ccggctccaa gacctcctcc tgccaggcca cacttgtgcc
      661 ctgagctggc ctgcatctgt gcccactcag gctccaccag agcagcccct gggacagcgt
      721 caccttctcc ggtggaggcg ggacgtggtg acagagacca agattgttga gctggtgatt
      781 gtggctgacc gttccgaggt ccagaggtac cgggacttcc agaacctgct gaaccgcacc
      841 ctggaagtgg ccctcctcct ggacacattc ttcaggcctc tgaatgtccg ggtggcgctc
      901 gtgggcctgg aggcctggac ccagcgtgac ctgatagaga taagccagca cccaggtgtc
      961 acactagaca gcttcctccg ctggcgccgg acagacctgc tgcctcggtt gccccacgac
     1021 agtgcccagc tggtgactgc cacttcattc tccgggccca tggtgggcat ggccattcag
     1081 aactccatct gttctcctga attctcagga ggtgtgaaca tggaccactc cacaagcatc
     1141 ctgggagtcg cctcctcaat agcccacgag ttgggccaca gcctaggcct gggccatgac
     1201 tcacctggga atagctgccc ctgtccaggt ccagccccag ccaagagctg catcatggag
     1261 gcctcaacag acttcctgcc aggcctgaac ttcagcaact gcagccgaca ggccctggaa
     1321 aaagccctcc tgggtgggat gggcagctgc ctctttgaac ggctctccgg tctgccctct
     1381 acggccagtg tctgcggaaa tatgttggtg gagcccggcg agcagtgtga ctgtggcttc
     1441 ccagatgact gcactgatcc ttgctgtgat tacttcacct gccagctgag gccaggggca
     1501 cagtgcgcgt ccgatggact ctgttgtcaa aattgccagc tgcgcccggc cagctggcag
     1561 tgccgctcta ccagaggtga ctgcgacttg cccgagttct gcccaggaga cagctcccag
     1621 tgcccccctg atgtcagcct gggggacggt gagccgtgtg ctggtggaca ggctgtgtgc
     1681 atgcaaggac gctgtacctc ctatgcccag cagtgccagg ctctctgggg gcctggggcc
     1741 cagcccgccg cgccactttg cctccttact gccaacactc ggggggacgc ctttgggagc
     1801 tgtgggcgca gccccgatgg cagctatgtg tcctgtgccc ctagagatgc cgtttgtggg
     1861 cagctccagt gccagggagg gagggcccag cctctgctgg gctcagcccg ggatcttcac
     1921 tgggagatgc tggaagccaa cgggacccag ctggaactga actgtagctg ggtacacctg
     1981 gacctgggca acgacgtggc ccagcccctg atgactctgc ctggcacagc ctgtggcccc
     2041 ggcctggtgt gcgtcgacca tcaatgccaa ccggtggaga tcctggggac acaggaatgt
     2101 cgaagcaaat gccatgggca tggggtctgc gacagcaaca gacgctgcca ctgtgaggag
     2161 ggttgggcgc ccccagactg caccacccac atcagagcaa ccagctccct gaccacaggg
     2221 ctgcccctca gcctcctgtt gttgctggtc ctggtgctgc ttggtgccag ctactggcac
     2281 cgtgcccgcc tgcgccagag actctgccag cttaagggac ccagctgcca atacagggca
     2341 gcccagtctg gtccccctga acgcccagga cccccgcaga gggctctgct gatgccaggt
     2401 gccaagtctc aggggcccac caagcctcca cccccgagaa aaccactgcc tactgaccct
     2461 cagggccagc acccttcggc tgacctgcct ggccctggag ctggaatcct gccctcagtg
     2521 gtaccctcca ggcctgcgcc gccgccccca gcagtgtcct cgctctacct ctgacctctc
     2581 ctgaggttcc gctgcctcca acctggactt aggacttcaa caggcagacc cctggagtcc
     2641 cttgcggtga ccgaaggagc tggggcctgg acactacgga acaggagtct taaaacactg
     2701 acaccaggca cttccacttg ctgtcgagca gcaccctggg gacccgccca cgcagtggca
     2761 tcttggggtt ggggagtgtc tgggagctgg acggagctga gggaggtgcg cacagcctgt
     2821 ctctgcagaa ctgcaataaa agtgaggtct tggga
//
LOCUS       XM_032605867            4506 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p53 binding protein 2
            (TP53BP2), transcript variant X1, mRNA.
ACCESSION   XM_032605867
VERSION     XM_032605867.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4506
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4506
                     /gene="TP53BP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 15
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740331"
     CDS             331..3741
                     /gene="TP53BP2"
                     /codon_start=1
                     /product="apoptosis-stimulating of p53 protein 2 isoform
                     X1"
                     /protein_id="XP_032461758.1"
                     /db_xref="GeneID:116740331"
                     /translation="MRFGSKMMPMFLTVYLSNNEQHFTEVPVTPETICRDVVDLCKEP
                     GESDCHLAEVWCGSERPVADNERMFDVLQRFGSQRSEVRFFLRHERPPGRDIVSGPRS
                     QDPSLKRNGVKVPGEHRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQMLATKEQ
                     RLKFLKQQDQRQQQQAAEREKLKRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVE
                     EIEQMNSLFQQKQRELVLAVSKVEELTRQLEMLKNGRIDGHHDNQSAVAELDRLYKEL
                     QLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNELRDRLWKKKAALQQKENLPVS
                     SDGHLPQPGASGPSRVAAVGPYIQSSTMPRIPSRPELLVKPALPDGPGATQASEGSMK
                     VQTLPNMRSGAASQVKGSKIHLLGPDWTPPNADLFSSQQASASVSKSSGNAPDQADDG
                     EVPLREKEKKVRPFSMFDTVDQSAAPPAFGTLRKNQSSEDILRDAQAANKNVAKVPPP
                     VPSKPKQINLPYFGQTNQSPSDIKPDGNPQQLSAAVASVGNKPKPAGQQQRVLLAASM
                     PSVGQADQTLPPGSKQESPPAAAVRPFTPQPSKDTLLPPFRKPQTVAASSIYSMYTQH
                     QAPGKNFQQAVQSALTKSHSRGPHFPSVYGKPVIATAQNPQQLPENIYSNTQGKPGSP
                     EPETEPISSVQETHENERIPRPLSPTKLLPFLSNPYRNQSDADLEALRKKLSNAPRPL
                     KKRSSITEPEGPNGPNIQKLLYQRTTIAAMETISVPAHASKSASGTASPESPMETQNP
                     YLHVEPEKEALPLAPEPVSPGEAGSASTESSDLPAPSPGLEYEPEGVPDSSPSFQNNV
                     EEPNPEAPPLLEVYLEEYPPYPPPPYPSGEPEGPGEDPVSLRPPEITGQVSLPPGKRT
                     NLRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH
                     NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNSVQVCKFLVESGAAVFAMT
                     YSDMQTAADKCEETEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKE
                     GDCMTVIRREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQRSLA"
     misc_feature    358..597
                     /gene="TP53BP2"
                     /note="Ras-associating (RA) domain found in
                     apoptosis-stimulating protein of p53 protein 2 (ASPP2);
                     Region: RA_ASPP2; cd17225"
                     /db_xref="CDD:340745"
     misc_feature    <715..>1320
                     /gene="TP53BP2"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <1939..3081
                     /gene="TP53BP2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3142..3402
                     /gene="TP53BP2"
                     /note="Ankyrin repeats (3 copies); Region: Ank_2;
                     pfam12796"
                     /db_xref="CDD:463710"
     misc_feature    3142..3222
                     /gene="TP53BP2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(3145..3150,3157..3165,3169..3174,3184..3186,
                     3193..3195,3220..3222,3226..3228,3232..3234,3244..3249,
                     3256..3264,3268..3273,3283..3285,3292..3294,3319..3321,
                     3325..3327,3331..3333,3343..3348,3355..3363,3367..3372,
                     3382..3384,3391..3393)
                     /gene="TP53BP2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    3226..3321
                     /gene="TP53BP2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3325..3414
                     /gene="TP53BP2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3532..3702
                     /gene="TP53BP2"
                     /note="Src Homology 3 (SH3) domain of Apoptosis
                     Stimulating of p53 protein 2; Region: SH3_ASPP2; cd11953"
                     /db_xref="CDD:212886"
     misc_feature    order(3556..3558,3565..3570,3574..3579,3625..3636,
                     3640..3645,3676..3678,3682..3684,3688..3690)
                     /gene="TP53BP2"
                     /note="p53 binding site [polypeptide binding]; other site"
                     /db_xref="CDD:212886"
ORIGIN      
        1 gcggggggcg gagccggcgc gggctcagcg ggggccaggc cccgggatta gttggtttcg
       61 gagcaaagct gggggagtcc gggcggtcgc gagcgctgag tagacaaagc cgcgtccggg
      121 ggcccggtcg gaggtgggcc cggggctcgg tggcgcccca gagcgcgggg agaactctgc
      181 ggacccgcac gccgccccac cacccgccgt cgctttgcaa caggtccgcc gcctcccggg
      241 cggcctccct ctgcgctccc cacccccgca ccgcgcgacc ccctgagcgc ctccactcgg
      301 ctccgagccg cggtctggcc atccgcttcg atgcggttcg ggtccaaaat gatgccgatg
      361 tttcttaccg tgtacctcag caacaacgag cagcacttca cggaagtccc agttactccg
      421 gaaaccatct gcagagacgt ggtggatctt tgcaaagaac ctggcgagag cgattgccac
      481 ctggctgaag tgtggtgcgg ctccgaacgt ccagttgctg ataatgagcg aatgtttgat
      541 gtcctgcaac ggtttggaag tcagaggagt gaagttcggt tcttccttcg ccatgaacgc
      601 ccccctggca gggacattgt gagcggacca aggtctcagg atccaagttt aaaaagaaat
      661 ggtgtaaaag ttccgggtga acatcgaaga aaggagaatg gcgttaatag tcctaggatg
      721 gacctgacac ttgctgaact tcaggaaatg gcatctcgcc agcaacaaca gattgaggcc
      781 cagcaacaaa tgctggccac taaggagcag cgcttaaagt ttttgaaaca gcaagatcag
      841 cgtcagcagc aacaagctgc tgaacgggaa aagcttaaga ggctcaaaga aatagctgag
      901 aatcaggaag ctaagctgaa aaaagtgaga gcacttaaag gccacgtgga acagaagagg
      961 ctaagcaacg ggaaacttgt ggaggaaatt gaacagatga atagtttgtt ccagcaaaag
     1021 cagagggagc tcgttctggc tgtgtcaaaa gtagaggaac ttacaagaca gctagagatg
     1081 ctcaagaatg gcaggattga tggtcaccat gacaaccagt ccgcggtggc tgagcttgat
     1141 cggctgtaca aggagctgca gttaagaaac aaactgaacc aggagcagaa tgccaagctg
     1201 cagcaacaga gggagtgctt gaataagcgc aattcagaag tggcggtcat ggacaagcgt
     1261 gttaatgagc tcagggaccg gctgtggaag aagaaggcgg ccctgcagca gaaagagaac
     1321 cttccagttt cgtctgatgg acacctgccc cagccggggg cgtcggggcc gagtcgagtg
     1381 gctgcggtcg gtccctatat ccagtcgtca actatgcccc ggattccctc gaggcctgaa
     1441 cttctggtga agccagccct gcccgatggg cctggggcta cgcaggcttc cgaggggtcc
     1501 atgaaagtcc agacactgcc caacatgaga tctggggccg cttcacaagt gaaaggctct
     1561 aaaatccatc tgcttggccc tgattggact cctccgaatg cagatctttt ctcgagccaa
     1621 caagcctctg cttctgtgtc caaaagctct ggaaatgctc cagaccaagc tgatgatggg
     1681 gaggttccgc tgagggagaa ggagaagaaa gtgcgtccct tttcaatgtt tgacaccgtg
     1741 gaccagtctg ctgccccacc tgcctttggt accctcagga agaaccagag cagtgaagat
     1801 atcttgcggg atgctcaggc tgcaaataag aatgtagcta aggtaccacc tcctgttcca
     1861 tcaaaaccaa aacagattaa tttgccttat tttggacaaa ctaatcagtc gccctcagac
     1921 attaagccag atggaaaccc tcagcagttg tcagcggctg tcgcatccgt gggaaacaaa
     1981 cccaaaccag cagggcagca gcagagggtc ctgctggctg ccagcatgcc ttcagttggc
     2041 caagcagacc agacccttcc tccaggttct aagcaagaaa gtccccctgc tgctgccgtc
     2101 cggcccttca cgcctcagcc ttccaaggac accctccttc cgcccttcag gaaaccccag
     2161 accgtggctg ccagctccat atactccatg tatacccagc accaggctcc cggcaaaaac
     2221 ttccagcagg ccgtgcagag cgcgttgacc aagtcccatt cccgagggcc ccactttccg
     2281 agcgtttatg gcaagcctgt gattgctact gcccagaacc cacagcagct cccagagaac
     2341 atttattcca atacccaggg caaacctggc agcccggaac ctgaaacaga gcccatttct
     2401 tcagttcagg agacccatga aaacgaaaga attcctaggc cactgagccc aaccaaatta
     2461 ctgcctttct tatcgaatcc ttaccgaaac cagagcgacg ctgacctaga agccctgcga
     2521 aagaaactgt cgaacgcacc acggccacta aagaaacgca gctctattac agagccagag
     2581 ggtcctaatg ggccgaatat tcagaaactt ctgtatcaga ggaccaccat cgccgccatg
     2641 gagaccatct ccgtcccggc acacgcatcc aagtccgctt ctgggactgc cagcccggaa
     2701 agcccgatgg agacccagaa tccatatttg cacgtggagc cagagaagga ggcgctccct
     2761 ctggcccctg aaccggtatc cccgggggaa gcagggagcg ccagtacaga gagcagtgac
     2821 ctgcccgctc cttctccggg ccttgagtat gagcctgaag gagtcccaga cagcagtcca
     2881 agtttccaga acaacgtgga agagccaaac ccagaggctc cccctctgct tgaagtgtac
     2941 ctcgaagagt acccccccta cccacccccg ccgtacccat ctggggagcc agaaggccca
     3001 ggagaagacc ctgtgagcct gcgtccgcct gagatcactg ggcaggtttc tctgcctcct
     3061 ggcaaaagga caaacttgcg taaaactggt tcagaacgga ttgcccatgg aatgagggtg
     3121 aaattcaacc cccttgcttt acttctagat tcctctttgg agggagaatt tgacctcgta
     3181 cagagaatta tatatgaggt tgatgacccg agccttccta acgatgaagg tatcacagct
     3241 cttcacaacg ccgtgtgtgc aggacacaca gaaattgtta aattcctggt acagtttggt
     3301 gtaaatgtca atgctgctga cagtgatgga tggaccccgc tgcattgcgc tgcgtcctgt
     3361 aacagcgtcc aggtgtgtaa gtttttggtg gagtctggag ccgctgtgtt tgccatgacc
     3421 tacagtgaca tgcagacggc tgctgataaa tgtgaggaaa cggaggaagg ctacacccag
     3481 tgctcgcagt ttctttacgg agttcaggag aagatgggca taatgaataa aggggtcatt
     3541 tatgcccttt gggactatga acctcagaat gacgacgagc tacccatgaa agaaggagac
     3601 tgcatgacag tcatccgcag ggaagacgaa gatgagattg aatggtggtg ggcccgcctg
     3661 aatgacaagg agggatacgt tccacgcaat ttgctgggac tatacccaag aattaaacca
     3721 agacaaagga gcttggcttg aaactttgca cacttttagt taatgaagaa ttaatctgtt
     3781 accaataaga aggaataata cgattgtttg tggcaaaaat gttgtaagac ttattttaat
     3841 gacaaactaa cttgaaagca atgaagatcg ggctctggaa gcaaatgaag gcttggagca
     3901 gagtcactgt tggtggagga tactcagcac gatggaatga acggagcttg gcaggaagct
     3961 gaccactctg tgctggatac aggtactctg tgtcacactc cgaaagatac acggtgaccg
     4021 tcctgttctc tgcaagaaac gggaccgctt attgggctcc tgggagatca gcttcagggc
     4081 ctgcttaaat gggcgatttt cattgcctgc ccctgtccct gccctcccac cagaaggagc
     4141 agtgccatca tggtgccatc tcagattgtc ccccagcacc agcaggcccg tgggggactc
     4201 acatggaggc tcgaaggtgc cgcacacttg cgtgtcgtct gtgaagaact gtttgttggt
     4261 tgtcagtgag caataacttt atgttatgag ttcttgtagc atcatgtatt caaaatattg
     4321 aaaccatact acactacagg taattagatt tagacttttg tttttaggct gaagtttgaa
     4381 tctatattta ttgtcttttg tatctcagaa attagagact tgctatatag acttacccgt
     4441 gatatttgtc aagatcatag ctgactttaa aaacaattgt aataaagtta aactttttga
     4501 ctctaa
//
LOCUS       XM_032605875            4965 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p53 binding protein 2
            (TP53BP2), transcript variant X2, mRNA.
ACCESSION   XM_032605875
VERSION     XM_032605875.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4965
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4965
                     /gene="TP53BP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 15
                     Proteins, and 88% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116740331"
     CDS             817..4200
                     /gene="TP53BP2"
                     /codon_start=1
                     /product="apoptosis-stimulating of p53 protein 2 isoform
                     X2"
                     /protein_id="XP_032461766.1"
                     /db_xref="GeneID:116740331"
                     /translation="MFLTVYLSNNEQHFTEVPVTPETICRDVVDLCKEPGESDCHLAE
                     VWCGSERPVADNERMFDVLQRFGSQRSEVRFFLRHERPPGRDIVSGPRSQDPSLKRNG
                     VKVPGEHRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQMLATKEQRLKFLKQQD
                     QRQQQQAAEREKLKRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNSLF
                     QQKQRELVLAVSKVEELTRQLEMLKNGRIDGHHDNQSAVAELDRLYKELQLRNKLNQE
                     QNAKLQQQRECLNKRNSEVAVMDKRVNELRDRLWKKKAALQQKENLPVSSDGHLPQPG
                     ASGPSRVAAVGPYIQSSTMPRIPSRPELLVKPALPDGPGATQASEGSMKVQTLPNMRS
                     GAASQVKGSKIHLLGPDWTPPNADLFSSQQASASVSKSSGNAPDQADDGEVPLREKEK
                     KVRPFSMFDTVDQSAAPPAFGTLRKNQSSEDILRDAQAANKNVAKVPPPVPSKPKQIN
                     LPYFGQTNQSPSDIKPDGNPQQLSAAVASVGNKPKPAGQQQRVLLAASMPSVGQADQT
                     LPPGSKQESPPAAAVRPFTPQPSKDTLLPPFRKPQTVAASSIYSMYTQHQAPGKNFQQ
                     AVQSALTKSHSRGPHFPSVYGKPVIATAQNPQQLPENIYSNTQGKPGSPEPETEPISS
                     VQETHENERIPRPLSPTKLLPFLSNPYRNQSDADLEALRKKLSNAPRPLKKRSSITEP
                     EGPNGPNIQKLLYQRTTIAAMETISVPAHASKSASGTASPESPMETQNPYLHVEPEKE
                     ALPLAPEPVSPGEAGSASTESSDLPAPSPGLEYEPEGVPDSSPSFQNNVEEPNPEAPP
                     LLEVYLEEYPPYPPPPYPSGEPEGPGEDPVSLRPPEITGQVSLPPGKRTNLRKTGSER
                     IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTE
                     IVKFLVQFGVNVNAADSDGWTPLHCAASCNSVQVCKFLVESGAAVFAMTYSDMQTAAD
                     KCEETEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTVIRR
                     EDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQRSLA"
     misc_feature    817..1056
                     /gene="TP53BP2"
                     /note="Ras-associating (RA) domain found in
                     apoptosis-stimulating protein of p53 protein 2 (ASPP2);
                     Region: RA_ASPP2; cd17225"
                     /db_xref="CDD:340745"
     misc_feature    <1174..>1779
                     /gene="TP53BP2"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    <2398..3540
                     /gene="TP53BP2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3601..3861
                     /gene="TP53BP2"
                     /note="Ankyrin repeats (3 copies); Region: Ank_2;
                     pfam12796"
                     /db_xref="CDD:463710"
     misc_feature    3601..3681
                     /gene="TP53BP2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(3604..3609,3616..3624,3628..3633,3643..3645,
                     3652..3654,3679..3681,3685..3687,3691..3693,3703..3708,
                     3715..3723,3727..3732,3742..3744,3751..3753,3778..3780,
                     3784..3786,3790..3792,3802..3807,3814..3822,3826..3831,
                     3841..3843,3850..3852)
                     /gene="TP53BP2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    3685..3780
                     /gene="TP53BP2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3784..3873
                     /gene="TP53BP2"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3991..4161
                     /gene="TP53BP2"
                     /note="Src Homology 3 (SH3) domain of Apoptosis
                     Stimulating of p53 protein 2; Region: SH3_ASPP2; cd11953"
                     /db_xref="CDD:212886"
     misc_feature    order(4015..4017,4024..4029,4033..4038,4084..4095,
                     4099..4104,4135..4137,4141..4143,4147..4149)
                     /gene="TP53BP2"
                     /note="p53 binding site [polypeptide binding]; other site"
                     /db_xref="CDD:212886"
ORIGIN      
        1 gccggcgcgg gctcagcggg ggccaggccc cgggattagt tggtttcgga gcaaagctgg
       61 gggagtccgg gcggtcgcga gcgctgagta gacaaagccg cgtccggggg cccggtcgga
      121 ggtgggcccg gggctcggtg gcgccccaga gcgcggggag aactctgcgg acccgcacgc
      181 cgccccacca cccgccgtcg ctttgcaaca ggtccgccgc ctcccgggcg gcctccctct
      241 gcgctcccca cccccgcacc gcgcgacccc ctgagcgcct ccactcggct ccgagccgcg
      301 gtctggccat ccgcttcgat gcggttcggg tccaaaatga tgccgttacg tggggagttt
      361 cttgcctttt gggaggtctg aggtcttctg ccagccttca gtaggagttc tgtaggagtt
      421 gttccacgtg tggatgtatt tctggtgtat ccgtggggag gaaggcgatc tccgcgtctt
      481 actcttccgc catcttcaag gtccccgatt tcggcctttt tgtgtcaaga tagacttcca
      541 gaatattttg cctctcagtg ggcagtggaa gtgattgaaa gactcaaaac gcagaacaag
      601 tcagcacttc aaacccagca cccaccgtgg aggtggagta aatagtgtgt ttgctttgtg
      661 ctgaatggaa gagcagctac ctcctcactg ctcagccggc cttccttcgg gatcgagggg
      721 cagttctgga agatctgctc accacctcgc acgtgctccc agggaccctg cattaggact
      781 gtttgtgggg cctgatccgt tttcctttcg ctcacgatgt ttcttaccgt gtacctcagc
      841 aacaacgagc agcacttcac ggaagtccca gttactccgg aaaccatctg cagagacgtg
      901 gtggatcttt gcaaagaacc tggcgagagc gattgccacc tggctgaagt gtggtgcggc
      961 tccgaacgtc cagttgctga taatgagcga atgtttgatg tcctgcaacg gtttggaagt
     1021 cagaggagtg aagttcggtt cttccttcgc catgaacgcc cccctggcag ggacattgtg
     1081 agcggaccaa ggtctcagga tccaagttta aaaagaaatg gtgtaaaagt tccgggtgaa
     1141 catcgaagaa aggagaatgg cgttaatagt cctaggatgg acctgacact tgctgaactt
     1201 caggaaatgg catctcgcca gcaacaacag attgaggccc agcaacaaat gctggccact
     1261 aaggagcagc gcttaaagtt tttgaaacag caagatcagc gtcagcagca acaagctgct
     1321 gaacgggaaa agcttaagag gctcaaagaa atagctgaga atcaggaagc taagctgaaa
     1381 aaagtgagag cacttaaagg ccacgtggaa cagaagaggc taagcaacgg gaaacttgtg
     1441 gaggaaattg aacagatgaa tagtttgttc cagcaaaagc agagggagct cgttctggct
     1501 gtgtcaaaag tagaggaact tacaagacag ctagagatgc tcaagaatgg caggattgat
     1561 ggtcaccatg acaaccagtc cgcggtggct gagcttgatc ggctgtacaa ggagctgcag
     1621 ttaagaaaca aactgaacca ggagcagaat gccaagctgc agcaacagag ggagtgcttg
     1681 aataagcgca attcagaagt ggcggtcatg gacaagcgtg ttaatgagct cagggaccgg
     1741 ctgtggaaga agaaggcggc cctgcagcag aaagagaacc ttccagtttc gtctgatgga
     1801 cacctgcccc agccgggggc gtcggggccg agtcgagtgg ctgcggtcgg tccctatatc
     1861 cagtcgtcaa ctatgccccg gattccctcg aggcctgaac ttctggtgaa gccagccctg
     1921 cccgatgggc ctggggctac gcaggcttcc gaggggtcca tgaaagtcca gacactgccc
     1981 aacatgagat ctggggccgc ttcacaagtg aaaggctcta aaatccatct gcttggccct
     2041 gattggactc ctccgaatgc agatcttttc tcgagccaac aagcctctgc ttctgtgtcc
     2101 aaaagctctg gaaatgctcc agaccaagct gatgatgggg aggttccgct gagggagaag
     2161 gagaagaaag tgcgtccctt ttcaatgttt gacaccgtgg accagtctgc tgccccacct
     2221 gcctttggta ccctcaggaa gaaccagagc agtgaagata tcttgcggga tgctcaggct
     2281 gcaaataaga atgtagctaa ggtaccacct cctgttccat caaaaccaaa acagattaat
     2341 ttgccttatt ttggacaaac taatcagtcg ccctcagaca ttaagccaga tggaaaccct
     2401 cagcagttgt cagcggctgt cgcatccgtg ggaaacaaac ccaaaccagc agggcagcag
     2461 cagagggtcc tgctggctgc cagcatgcct tcagttggcc aagcagacca gacccttcct
     2521 ccaggttcta agcaagaaag tccccctgct gctgccgtcc ggcccttcac gcctcagcct
     2581 tccaaggaca ccctccttcc gcccttcagg aaaccccaga ccgtggctgc cagctccata
     2641 tactccatgt atacccagca ccaggctccc ggcaaaaact tccagcaggc cgtgcagagc
     2701 gcgttgacca agtcccattc ccgagggccc cactttccga gcgtttatgg caagcctgtg
     2761 attgctactg cccagaaccc acagcagctc ccagagaaca tttattccaa tacccagggc
     2821 aaacctggca gcccggaacc tgaaacagag cccatttctt cagttcagga gacccatgaa
     2881 aacgaaagaa ttcctaggcc actgagccca accaaattac tgcctttctt atcgaatcct
     2941 taccgaaacc agagcgacgc tgacctagaa gccctgcgaa agaaactgtc gaacgcacca
     3001 cggccactaa agaaacgcag ctctattaca gagccagagg gtcctaatgg gccgaatatt
     3061 cagaaacttc tgtatcagag gaccaccatc gccgccatgg agaccatctc cgtcccggca
     3121 cacgcatcca agtccgcttc tgggactgcc agcccggaaa gcccgatgga gacccagaat
     3181 ccatatttgc acgtggagcc agagaaggag gcgctccctc tggcccctga accggtatcc
     3241 ccgggggaag cagggagcgc cagtacagag agcagtgacc tgcccgctcc ttctccgggc
     3301 cttgagtatg agcctgaagg agtcccagac agcagtccaa gtttccagaa caacgtggaa
     3361 gagccaaacc cagaggctcc ccctctgctt gaagtgtacc tcgaagagta ccccccctac
     3421 ccacccccgc cgtacccatc tggggagcca gaaggcccag gagaagaccc tgtgagcctg
     3481 cgtccgcctg agatcactgg gcaggtttct ctgcctcctg gcaaaaggac aaacttgcgt
     3541 aaaactggtt cagaacggat tgcccatgga atgagggtga aattcaaccc ccttgcttta
     3601 cttctagatt cctctttgga gggagaattt gacctcgtac agagaattat atatgaggtt
     3661 gatgacccga gccttcctaa cgatgaaggt atcacagctc ttcacaacgc cgtgtgtgca
     3721 ggacacacag aaattgttaa attcctggta cagtttggtg taaatgtcaa tgctgctgac
     3781 agtgatggat ggaccccgct gcattgcgct gcgtcctgta acagcgtcca ggtgtgtaag
     3841 tttttggtgg agtctggagc cgctgtgttt gccatgacct acagtgacat gcagacggct
     3901 gctgataaat gtgaggaaac ggaggaaggc tacacccagt gctcgcagtt tctttacgga
     3961 gttcaggaga agatgggcat aatgaataaa ggggtcattt atgccctttg ggactatgaa
     4021 cctcagaatg acgacgagct acccatgaaa gaaggagact gcatgacagt catccgcagg
     4081 gaagacgaag atgagattga atggtggtgg gcccgcctga atgacaagga gggatacgtt
     4141 ccacgcaatt tgctgggact atacccaaga attaaaccaa gacaaaggag cttggcttga
     4201 aactttgcac acttttagtt aatgaagaat taatctgtta ccaataagaa ggaataatac
     4261 gattgtttgt ggcaaaaatg ttgtaagact tattttaatg acaaactaac ttgaaagcaa
     4321 tgaagatcgg gctctggaag caaatgaagg cttggagcag agtcactgtt ggtggaggat
     4381 actcagcacg atggaatgaa cggagcttgg caggaagctg accactctgt gctggataca
     4441 ggtactctgt gtcacactcc gaaagataca cggtgaccgt cctgttctct gcaagaaacg
     4501 ggaccgctta ttgggctcct gggagatcag cttcagggcc tgcttaaatg ggcgattttc
     4561 attgcctgcc cctgtccctg ccctcccacc agaaggagca gtgccatcat ggtgccatct
     4621 cagattgtcc cccagcacca gcaggcccgt gggggactca catggaggct cgaaggtgcc
     4681 gcacacttgc gtgtcgtctg tgaagaactg tttgttggtt gtcagtgagc aataacttta
     4741 tgttatgagt tcttgtagca tcatgtattc aaaatattga aaccatacta cactacaggt
     4801 aattagattt agacttttgt ttttaggctg aagtttgaat ctatatttat tgtcttttgt
     4861 atctcagaaa ttagagactt gctatataga cttacccgtg atatttgtca agatcatagc
     4921 tgactttaaa aacaattgta ataaagttaa actttttgac tctaa
//
LOCUS       XM_032605891            3199 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus calpain 2 (CAPN2), mRNA.
ACCESSION   XM_032605891
VERSION     XM_032605891.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3199
                     /gene="CAPN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 13 long SRA reads, 40
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740338"
     CDS             169..2271
                     /gene="CAPN2"
                     /codon_start=1
                     /product="calpain-2 catalytic subunit"
                     /protein_id="XP_032461782.1"
                     /db_xref="GeneID:116740338"
                     /translation="MAGIAVKLAKDREAAEGLGSHERAVKYLNQDYAALRDECLEAGA
                     LFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICDDPQFITGGATRTDICQGAL
                     GDCWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLPT
                     KDGELLFVHSVEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELR
                     KAPPNLFRIIQKALQKGSLLGCSIDITSAADSEAITFQKLVKGHAYSVTGAEEVESRG
                     SLQKLIRIRNPWGEVEWTGQWNDNCPNWTTIDPEERERLTRRQEDGEFWMSFNDFLRH
                     YSRLEICNLTPDTLTSDTYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLE
                     EEDEDQEDGENGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEIPEELTGQTNVHLSK
                     SFFLTHRARERSDTYINLREVLNRFKLPPGEYILVPSTFEPNKDGDFCIRVFSEKKAD
                     YQVVDDEIEATLEEIDVSEDDIDDGFRRLFAQLAGEDAEISAFELQTILRRVLAKRQD
                     IKSDGFSIETCKIMVDMLDSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNS
                     YEMRKALEEAGFKMPCQLHQVIVARFADDQLIIDFDNFVRCLIRLETLFRIFKQLDPE
                     DTGMIQLDLMSWLCFSVL"
     misc_feature    304..1194
                     /gene="CAPN2"
                     /note="Calpain family cysteine protease; Region:
                     Peptidase_C2; pfam00648"
                     /db_xref="CDD:459889"
     misc_feature    1228..1698
                     /gene="CAPN2"
                     /note="Calpain, subdomain III. Calpains are
                     calcium-activated cytoplasmic cysteine proteinases,
                     participate in cytoskeletal remodeling processes, cell
                     differentiation, apoptosis and signal transduction.
                     Catalytic domain and the two calmodulin-like domains
                     are...; Region: Calpain_III; cd00214"
                     /db_xref="CDD:238132"
     misc_feature    order(1342..1350,1381..1383)
                     /gene="CAPN2"
                     /note="acidic loop; other site"
                     /db_xref="CDD:238132"
     misc_feature    1765..2268
                     /gene="CAPN2"
                     /note="Penta-EF hand, calcium binding motifs, found in
                     m-type calpain (CAPN2); Region: EFh_PEF_CAPN2; cd16199"
                     /db_xref="CDD:320074"
     misc_feature    order(1765..1851,1864..1887,1894..2076,2092..2178,
                     2182..2268)
                     /gene="CAPN2"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:320074"
     misc_feature    1765..1851
                     /gene="CAPN2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320074"
     misc_feature    order(1801..1803,1807..1809,1822..1824,1876..1878,
                     1921..1923,1927..1929,1933..1935,1954..1956,2011..2013,
                     2017..2019,2023..2025,2044..2046,2140..2142,2146..2151)
                     /gene="CAPN2"
                     /note="Ca binding site [ion binding]; other site"
                     /db_xref="CDD:320074"
     misc_feature    1894..1983
                     /gene="CAPN2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320074"
     misc_feature    1984..2076
                     /gene="CAPN2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320074"
     misc_feature    2092..2178
                     /gene="CAPN2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320074"
     misc_feature    2182..2268
                     /gene="CAPN2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320074"
ORIGIN      
        1 acgccccgac gcgcggagtg cgctgccctg ccgggtgaat catcatcacc cgcggcggcc
       61 gctcccagtc ccgctgccgc gcgccgaacc ctggccgcga ccctgcggag tgccgcacag
      121 agcagccgct gagaccctgg ctcgcgcagc gcggacaccg ggccgaccat ggcgggcatc
      181 gcggtcaagc tggcgaagga ccgggaggcg gccgaggggc tgggctcgca cgagagggcc
      241 gtcaagtacc tcaaccagga ctacgcggcg ctgcgggacg agtgcctgga ggccggggcg
      301 ctcttccagg acccgtcctt cccggccctc ccgtcttccc tgggcttcaa ggagttggga
      361 ccctactcca gcaagacccg gggcatcgag tggaagcggc ccacggagat ctgcgatgat
      421 ccacagttta ttactggagg agccactcgc acagacatct gccaaggagc cctgggggac
      481 tgctggctac tggcagccat tgcctccctc accttgaatg aagaaatcct ggcccgagtc
      541 gtccccttgg accagagctt ccaggagaac tacgcgggga tcttccactt ccagttctgg
      601 cagtacggcg aatgggtgga agtggtggtg gacgacaggc tgcccaccaa ggacggggag
      661 ctgctcttcg tgcactcggt agagggcagt gagttctgga gcgcgctgct ggagaaggcc
      721 tacgccaaga tcaatgggtg ttacgaagca ctctccgggg gtgccaccac cgagggcttc
      781 gaggacttca ccggaggcat cgccgagtgg tatgagttaa ggaaggcccc tcccaacctg
      841 ttcaggatca tccagaaagc tctgcagaaa ggctctctcc ttggctgctc tatcgatatc
      901 accagtgctg cagactcgga ggccatcacc ttccagaagc tggtgaaggg gcacgcatac
      961 tcggtcactg gcgccgagga ggtggaaagc agaggaagcc tgcagaagct gatccgcatc
     1021 cggaatccct ggggagaggt ggagtggacc gggcagtgga acgacaactg cccaaactgg
     1081 accactattg acccagagga gagggaaagg ctgaccagac ggcaggaaga tggggaattc
     1141 tggatgtctt tcaacgactt cctgaggcac tattcccgcc tggagatctg caacctgacc
     1201 cctgacacgc tgaccagtga cacctacaag aagtggaagc tcaccaagat ggatgggaac
     1261 tggaggcggg gctccaccgc gggcggctgc aggaactacc cgaatacctt ctggatgaac
     1321 cctcagtacc tgatcaagtt ggaggaggag gacgaagacc aggaggacgg ggagaacggc
     1381 tgcaccttcc tggtgggtct catccagaag caccggcgac ggcagaggaa gatgggcgag
     1441 gacatgcaca ccattggctt cggcatctat gagattccag aggagttgac aggacagacc
     1501 aatgtccacc tcagcaagag cttcttcctg acgcaccgag cgagggagcg gtcggacacc
     1561 tacatcaacc tgcgggaggt gctcaaccgc ttcaagctgc ccccggggga gtacatcctg
     1621 gtgccatcca ccttcgagcc caacaaggac ggggacttct gcatccgggt cttttccgag
     1681 aagaaagctg actaccaagt tgtcgacgac gaaatcgagg ccacccttga agagattgat
     1741 gtcagcgagg acgacatcga tgatggattc aggaggctgt ttgcccagtt ggcaggagag
     1801 gatgcagaga tctctgcctt tgagttgcag acaatcctga gaagagttct ggcaaagcgc
     1861 caagatatca agtcagacgg cttcagcata gagacctgca aaatcatggt tgacatgctc
     1921 gattcggatg ggagtggcaa gctgggtctg aaggagttct acattctttg gaccaagatt
     1981 cagaaatacc aaaaaattta ccgggaaatc gacgtggaca ggtccggaac catgaactcc
     2041 tatgagatgc ggaaagcatt agaagaagcg ggtttcaaga tgccctgtca gctccaccaa
     2101 gtcatcgttg ctcggttcgc agatgaccag ctcatcatcg attttgacaa ttttgttagg
     2161 tgtttgattc gactggaaac actattcagg atatttaagc agctggaccc cgaggatact
     2221 ggtatgatcc agcttgacct tatgtcttgg ctgtgttttt cagtactttg aggttataac
     2281 tgatctgcct gaagacttct catgaaagaa aatcagccac ggactaagcc tccacagaga
     2341 aacttcttat ctggatcttg aaattatggg aacattgatt agagctggaa atgatgatac
     2401 tatttacttg agaaagcaga actttcagat atcaaagtaa aagatttgca tataatcgta
     2461 ctaaatgcaa gtgagtcact taacccttga aaaacttaga gaaaaccttc aatctgtacg
     2521 tagtatacac tttactttta cacactttcc tgtttataac aatattaaat caggaaaaaa
     2581 tgcagggagg tatttaacag ctgagcttaa tttaacattc agtcaacctt aaaggacata
     2641 aggtccttgc cggcaatatt taaagcaact ttgagtttaa aaatatagtt gtgacatgta
     2701 ccaaacagct gtccagggat taccattccc cttgagtaaa atggaaaaat acgatgtatc
     2761 acgaaggcat ctgaagaggc caggtgagaa gcacatctct ctcatttggg ttaaataaga
     2821 gacagatttt atataaaact gactggttaa cagtgagtct gtctcaagtc ctcgcgcacg
     2881 tctggtctta taaactgagc gttacgacac tgaagggacg ctcctggtgc tcggctgaag
     2941 tgatgaccca aaccgggggt cccgtctgca agcccacggt gacggaagac agcacagctg
     3001 ttcgccgcgt gcctcgaacc ttcccagact tcaccgctag cgttcgcgca tggattaggg
     3061 gggacgcccg tggaaaccac atgaacgtgt ttcctggctt caccttgggt aaatgctagc
     3121 gacactgtac ggatactgcc ttgttgcctt accttcttcc aaatgtactg ttcaataaag
     3181 agtcgcccag gcaatccca
//
LOCUS       XM_032605912            2685 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger CCCH-type containing 12A
            (ZC3H12A), mRNA.
ACCESSION   XM_032605912
VERSION     XM_032605912.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2685
                     /gene="ZC3H12A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740351"
     CDS             198..1949
                     /gene="ZC3H12A"
                     /codon_start=1
                     /product="endoribonuclease ZC3H12A"
                     /protein_id="XP_032461803.1"
                     /db_xref="GeneID:116740351"
                     /translation="MSLWELEDGHSCRGTPRPARESPAEEARTAELQMKVDFFRKLGY
                     SSAEIHSVLQKLGVQADTNTVLGELVKHGSAAERERQASPDPCPQLPLVPRGGGNPKT
                     PILEPSPPEEDKEGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDIT
                     VFVPSWRKEQPRPDVPITDQHILRDLEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAF
                     ESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFL
                     RKKPLMAEHRKQPCPYGRKCTYGIKCRFFHPERPSRPQRSVADELRANALLSPPRPPS
                     KEKSGRRPSPSSQRGSLPTEHEQCSPDGKKLGAQAPPGTPREGLTQTFTPAGRSLPPS
                     GGSGSSFGPSDWFPQTLDSLPYTSQDCLDSGIGSLESQMSELWGIRGGGPTEPGPPQG
                     PYAGYRPYGAELPTTPAFSAFGRAMGAGHFSVPADYAPPPAAFPPREYWSEPYQLPPP
                     TPVLQEPRVPGPGADRGPWGGAGSLAKERASVYTKLCGVFPPHLVEAVMGRFPQLLDP
                     QQLAAEILSYKSQHHSE"
     misc_feature    294..416
                     /gene="ZC3H12A"
                     /note="UBA-like domain; Region: UBA_6; pfam18039"
                     /db_xref="CDD:407876"
     misc_feature    561..953
                     /gene="ZC3H12A"
                     /note="PRORP-like PIN domain of ribonuclease Zc3h12a and
                     related proteins; Region: PIN_Zc3h12-like; cd18729"
                     /db_xref="CDD:350296"
     misc_feature    1062..1118
                     /gene="ZC3H12A"
                     /note="RNA-binding, Nab2-type zinc finger; Region:
                     zf-CCCH_2; pfam14608"
                     /db_xref="CDD:464217"
     misc_feature    1797..1928
                     /gene="ZC3H12A"
                     /note="Endoribonuclease Regnase 1/ ZC3H12 C-terminal
                     domain; Region: Regnase_1_C; pfam18561"
                     /db_xref="CDD:465803"
ORIGIN      
        1 cttccgcgtc atggtcccga gtgccgccca cccgccccgt ataaaagcgc cgccggcctt
       61 gcccccggga ctcggcccca tggagatgcc gccggccgcg gctggcgcac ggcagggagc
      121 tgtgacaagt gccttccacc agtctgagct gtgagtggcc ggtgtaaaga gaggcccacc
      181 caggaagcca ccgcaccatg agtctgtggg agcttgaaga cggccacagc tgccgaggga
      241 cccccaggcc ggctcgggag tccccggccg aggaggcaag gactgcggag ctgcagatga
      301 aggttgactt cttccggaag ctgggctact cgtccgctga gatccacagt gtcctgcaga
      361 agctgggggt ccaggcagac accaacactg tgctgggcga gctggtgaaa catgggtcag
      421 cagccgagcg ggagcgccag gcatcgccgg acccctgccc tcagctgcct ctggtccccc
      481 ggggcggggg caaccccaag acccccatcc tggagccctc tccccccgag gaggacaagg
      541 agggcagtga cctgaggccc gtggtcatcg atgggagcaa cgtggccatg agccacggga
      601 acaaggaggt cttctcttgt cggggtatcc tcctggcagt gaactggttt ctggagcggg
      661 gccacacaga catcacagtg tttgtaccat cttggaggaa ggagcagcct cggcccgatg
      721 tgcccatcac agaccagcat atcctgcggg acctggagaa gaagaagatc ctggtgttca
      781 cgccgtcgag gcgtgtgggc ggcaagcgcg tggtctgcta cgacgaccgc ttcatcgtga
      841 agctggcctt cgagtccgat ggcatcgtgg tctctaatga cacttaccgg gacctccagg
      901 gcgagcggca ggagtggaag cgcttcatcg aggaacggct gctcatgtac tcctttgtca
      961 acgacaagtt catgccccct gatgacccct tgggccgtca cgggccgagc ctggacaact
     1021 tcctgcgtaa gaagccactc atggccgagc acaggaagca gccgtgtccc tatgggagga
     1081 aatgcaccta tgggatcaag tgccgattct tccaccccga gcggccaagc cggccccagc
     1141 gctctgtggc tgacgagctc cgtgccaacg ccctcctctc gccccccagg ccgccgagca
     1201 aggagaaaag tggccggcgg ccttcgcctt cctctcagcg cggctctctg ccgacagagc
     1261 acgagcagtg cagcccggac gggaagaagc tgggggccca ggcacccccg ggaacccccc
     1321 gggaaggcct gacacagacc ttcaccccag caggcaggag cctcccacct agtgggggca
     1381 gtggcagcag ctttgggccc tcggactggt tcccgcagac cctggactct ctcccgtata
     1441 cctcccagga ttgcctggac tcgggcattg gctccctgga gagccagatg tcagaactct
     1501 gggggattcg aggaggcggc cccactgagc cgggcccacc tcagggccct tatgctggct
     1561 accgccccta tggggctgag ctccccacca ctccggcctt ctctgccttc ggccgggcca
     1621 tgggtgctgg ccacttcagc gtccctgctg actacgcacc cccgccagct gcctttccac
     1681 ctcgagagta ctggtctgag ccataccagc tgcccccacc caccccagtc ctgcaggagc
     1741 cccgggtgcc gggcccaggg gctgacaggg gcccctgggg cggggcaggc agcctagcca
     1801 aggagcgagc cagcgtgtac accaagctgt gtggcgtctt ccccccgcac ctggtggagg
     1861 ctgtgatggg gcgcttcccg cagctcctgg acccccagca gctagccgcc gagatcctct
     1921 cctacaagtc ccagcaccac agtgagtaag ccggccagcc gcccgggcag cacctccggc
     1981 ctccgagggc tgccaggctg ggctttgagc cttcgagcag cccagccccg gccccagcct
     2041 ggaggctgca cagagggagg attcaagtag ggaagagaac ccacaaacca aagatactgt
     2101 aggattggtt ctggcacctc taggcgtctg cccaaggggt caggagcgat caccctgttg
     2161 atgcacattg tatctgtagt ttaaggagac gctgccagta acggctgtca gtctgtggct
     2221 gaggcccaaa ccctcctttc tctcagaggg cggggaggga ggcagcaggg agcagaggcc
     2281 tgggctgggg gccctctgca cggcccccca cctccgcccc gtccctggga tgccggcctt
     2341 ggccggctcg ttgggcacca tgtgcctgcc ctccgtgggc cctcctctaa gccaatgagg
     2401 cctcgtccgt gctctagcgg gcacggggct tcatgttagt aagcaagatg cttcttaata
     2461 acccacttcc acttccgtcc cactctgtgc tcctatccca tcgctcctgc agggtcaagg
     2521 gcactctgcc ccaccctctc ctcctccccc cttcctctgt attcagagcc atctcgccct
     2581 tccccaaggg gggacatgtg tatgtgtgtg tacaggtgta aatgttaaat attttaactg
     2641 gaaagccctt gcctctcttc acacatcaat aaagtacaat ctgag
//
LOCUS       XM_032605924            3535 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus GPN-loop GTPase 2 (GPN2), mRNA.
ACCESSION   XM_032605924
VERSION     XM_032605924.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3535
                     /gene="GPN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 7 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740356"
     CDS             232..1164
                     /gene="GPN2"
                     /codon_start=1
                     /product="GPN-loop GTPase 2"
                     /protein_id="XP_032461815.1"
                     /db_xref="GeneID:116740356"
                     /translation="MAGAAPTTAFGQAVIGPPGSGKTTYCLGMREFLRALGRRVAVVN
                     LDPANEGLPYECAVDVGELVGLGDVMDALQLGPNGGLLYCMEYLEANLDWLRAKLDPL
                     RGHYFLFDCPGQVELCTHHGALRSIFSQMARWDLRLTAVHLVDSHYCTDPAKFISVLC
                     TSLATMLHVELPHVNLLSKMDLIEHYGKLAFNLDYYTEVLDLSYLLDHLASDPFFRHY
                     RQLNEKLVQLIEDYSLVSFIPLSIQDKESIQRVLQAVDKANGYCFGVQEQRSLEAVMS
                     AAVGADFHFSSTLGLQEKYLAPSEQSVEQEAMKL"
     misc_feature    259..1002
                     /gene="GPN2"
                     /note="GPN-loop GTPase 2; Region: GPN2; cd17871"
                     /db_xref="CDD:349780"
     misc_feature    order(280..303,763..768,772..774,931..933,952..960)
                     /gene="GPN2"
                     /note="putative active site [active]"
                     /db_xref="CDD:349780"
ORIGIN      
        1 acgtcgtccg gaagtccggt gctggtcccg tcagtaccgg gccatttggt cgcctcacat
       61 cgcgcgggtc cctactcttc ctccttaggc gacccccggg catcaccgcc ggcccccgac
      121 gaactgcacg tcggggatcc cgttgccctc ggctctcgtc ttcggcttgg ctcctgccct
      181 gcttccctgc cgagcttacc tgctccgcac ggggccgtgt gccggctgcc catggcgggg
      241 gccgctccga ccacggcctt tgggcaggcg gttattggcc ctccgggctc ggggaagacc
      301 acgtactgcc tgggcatgag ggagttcctg cgcgcgctgg gccggcgtgt ggcggtggtg
      361 aacctggacc cggccaatga ggggctgccg tacgagtgcg ccgtggacgt gggcgagctg
      421 gtggggctgg gcgacgtgat ggacgcgctg cagctggggc ccaacggcgg cctgctgtac
      481 tgcatggagt acctggaggc caacctggac tggttgcgtg ccaagctcga ccccctccgc
      541 ggccactact tcctcttcga ctgccctggc caggtggagc tctgcacgca ccacggagcc
      601 ctgcgcagca tcttctccca gatggcgcgg tgggacctca ggctgactgc tgtccacctg
      661 gtggattctc actattgcac agaccctgcc aagttcattt cggtactgtg tacctccctg
      721 gccaccatgc tgcatgtgga gctgccccat gtcaacctcc tctccaagat ggacctcatt
      781 gaacactatg ggaagctggc cttcaacctg gactactaca cagaggtcct ggacctctcc
      841 tacctgcttg accacctggc ttctgatcct ttcttccgcc actaccgtca gctcaatgag
      901 aaactggtgc agctcatcga agactacagc ctggtctcct tcatccctct cagcatccag
      961 gacaaggaga gtatccagcg ggtcctgcag gctgtggata aagccaatgg ctactgcttt
     1021 ggggtccagg agcagcggag cctggaggct gtgatgtctg ccgcggtggg agctgacttc
     1081 cacttctcct ccaccctggg cctgcaggag aagtacctgg cgccctcaga gcagtcagtg
     1141 gagcaggagg ccatgaagct atagcaacaa gctgagctct ggagaacaag acacacgacc
     1201 cagcgctggg gagagtggca gcggacagct cagtggcctg cagatccaag ggcagccctc
     1261 ccagccagag ctgggagact ggcgagggca tactcagcct tgcggaggac ttctggccaa
     1321 aagccacaca tgtagccaag cagagcacca gtcacagcct catgaactct gggcgctgcc
     1381 accagggatt cagcactggt cccactcagg ctgtgacgga atgtgctaca atacaagagt
     1441 ttatcttcta ctttttgtgg cttccaaact ttcttcaatc atccaggccg agtgagttgg
     1501 gaatatggga atgtcccctt tcctcagaag agtcctattt cttcatacta cagggcagtg
     1561 tttcccccaa agcacgggat catactagac ggttgactct cagtcctcag ttatgctctt
     1621 tggttaatct tcagttttaa cagtgaacct caaacttgag gtctcacaga caacacttcc
     1681 tagcagatct tgtaacgttt tattttcatt gtctttatgt catggtttta ctgttttttg
     1741 aggttgtgtt aactagtttt ccatttatat tagtgatgaa aagttgactt taaaatgaaa
     1801 ttatttatac aaaatgagtt gcttaaagga aaatatcagt atgtagtcgt atcatgaggg
     1861 ctgtgggaaa agtgaagacg gcttgaagtt ggaaatactg gtgtttgctt cctttgctct
     1921 tcttgcaact ggttggatgc aattcacatt ttcaaccagt aggtggcatc ccaggcttat
     1981 tttttaattt aattttattt ttttttccgg ctgtagcctg gaggcagaag ggaacagatg
     2041 gctgtcctgc cagtagtctt atttgcagac actcagtgct gttaatacat gggaagggct
     2101 tagcatttca caaagagctt ccacacacac agtcctcatg tggctttcac agcagctcct
     2161 agggacatag acaagatggg gaatagtact aagccccact ttactgtgag gaaacagaaa
     2221 gatgaggagt ttgaacttca gtcagcctgt ctctctcata gctcactttg ctgaatactt
     2281 aatggtgaaa agtcagggcc ctcctcccac agggtttatg accaatcagg agaaagaatt
     2341 tagacacctg tagggtatta actgaatcat aaatcagggg gaagatagat gactggtggt
     2401 tcggacagtt ggagaattca atttaggaaa actgttctga agcagcattg agatgggggt
     2461 gaccgggctt tgcttctcac atttggtcac cagagcagaa ggcagaagag ttaggggctg
     2521 tgaggaggcc cctcgggctg gaacagtgtg aaagcagccg accccgactc ccacacctgg
     2581 cgggacaggg gatgataact gggtgctcct tcccccgact ctcatctaag gagttcaaag
     2641 cacctcatcc ctattgacac tgtacacggt ggggagtgtc aacagtgcat gccagggaaa
     2701 ctgaggccag gaggcactgc ctggggctgg ctgtgagtca cctatggggc ctggagccca
     2761 ggaataatga cacccaggct gctggacaga tccctcatca gttagggcat gagggtgggt
     2821 gctgtgtttt tgaaagtaat accagtagct gtggtcatgg gttttgatgc ttaccccatc
     2881 ctggaggccc cagctatcac caaagcaccc agctggaagg aagcatcatt tagaacttta
     2941 tggcctcata tgcaagcacc ctgagcattt attctctgca gtcatcaagt gaagaaggat
     3001 ggacaaattc caaactttat tttcaggcct tggtgtgaca acaagggtgt tttctcctct
     3061 agtaaatgga gctctgtcca cttcccactg atagcaacgt gattttctat cccccctgtc
     3121 atgattggga ggggatagca cagtgcagaa aagcagaggt gtctgggttc caggtgaggt
     3181 ctgttcagca tgaagtgtgt agggtaagag aaagaccatc ctcgatttgt cagcatatga
     3241 cgactgtcct taagatttct ttttttcctg atagaaaagt gaaaagcttg gaaaatgaaa
     3301 ataagtcacc catgatccca ccacagataa ataattttta aatatttata ataaattttc
     3361 tattcaaatg tatattttgt gttttttatt tcaagtctta tttttctatg cgttcagagg
     3421 gatagctata gcatttatat acgtgggata tattgttaat gctctgtaac ctgctttttt
     3481 cagttacctt tatttcatgt aactaaaact ataaggacct tttaaatgtc tacat
//
LOCUS       XM_032605938            6296 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PDLIM1 interacting kinase 1 like
            (PDIK1L), transcript variant X1, mRNA.
ACCESSION   XM_032605938
VERSION     XM_032605938.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6296
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6296
                     /gene="PDIK1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 17
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740361"
     CDS             2004..3302
                     /gene="PDIK1L"
                     /codon_start=1
                     /product="serine/threonine-protein kinase PDIK1L isoform
                     X1"
                     /protein_id="XP_032461829.1"
                     /db_xref="GeneID:116740361"
                     /translation="MIAASPAPPPPLPPQQLHRPQTWLSDSDKRCSLPPGGAGARPPS
                     SGCTSPRVRGKGPLTAGIPGPRGGRCTRRSTPATPHTCPQLETLTLKMVSSQPKYDLI
                     REVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIH
                     LEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDM
                     NEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQSRLDTSDLEPT
                     LKVADFGLSKVCSAFGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFAL
                     GIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMN
                     GRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET"
     misc_feature    2295..3269
                     /gene="PDIK1L"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     PDLIM1 interacting kinase 1 like; Region: STKc_PDIK1L;
                     cd13977"
                     /db_xref="CDD:270879"
     misc_feature    order(2316..2330,2340..2342,2379..2381,2385..2387,
                     2478..2480,2631..2642,2652..2654,2658..2660,2766..2768,
                     2772..2774,2778..2783,2787..2789,2844..2846,2853..2855,
                     2934..2945)
                     /gene="PDIK1L"
                     /note="active site"
                     /db_xref="CDD:270879"
     misc_feature    order(2316..2330,2340..2342,2379..2381,2385..2387,
                     2478..2480,2631..2642,2652..2654,2766..2768,2772..2774,
                     2778..2783,2787..2789,2844..2846)
                     /gene="PDIK1L"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270879"
     misc_feature    order(2328..2330,2652..2654,2658..2660,2766..2768,
                     2772..2774,2778..2780,2853..2855,2934..2945)
                     /gene="PDIK1L"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270879"
     misc_feature    order(2841..2879,2901..2945)
                     /gene="PDIK1L"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270879"
ORIGIN      
        1 tacaagtttc caaaatagta actatataat aatgtatatt cacagaagtc tcatttccat
       61 ccctacccac tccatcccat atagcaaaca atttttagaa gattgagttt agttttctat
      121 tgtttaactt ttaaatataa gcaattaatg tatatttata tcttcccact tacacagaag
      181 atagcatact ataaacgcta tgtatcttat ttcccttaac gtatatgggc atcactacat
      241 attagtttct gtttatcagt atatataaga actcttccac atatcttttt acagctacat
      301 agcactccat cctgtgtctg tactataatt tattcagcta gttcttaact gacacaagca
      361 gtttccaatt tttcgctata aaaataatgc cataatgaat agccttgtgc acagagcttt
      421 ttgtattttg ccaatatatc actaggacag attcctgcaa gtttagccct gacctaggtt
      481 tactgggtga aagagtaaat acatatgtaa tgtggctata gattgccaaa ttaccttagt
      541 tagagttaca tcattttgcc ttcccatcag caatgtatga caatgctatc ctcaggagta
      601 ttttggtatg atatcagata aaggaggatg cagaaatgaa tcacagacaa ggttcctgtc
      661 cccaggaact ctcagcctag taaaaggctt atgggcaaat ataatgatat aatgtaatct
      721 tcagggcaga tttattcgga agcttaagct tcagagtccc tcacagagac cctttccaag
      781 gcctcagaaa tgtattcaca ggtccacttt gtaatctttt tcctaaagag gacaccccca
      841 aattatttaa acatctactt cacagacttt agagccagtt ccgtaacttt ggagttatgg
      901 gagtggattt caagttctgc aaccatcttg agaggaggga ttccagtatt taatgactga
      961 gacaaagaga caaaaagaaa agtctccttt gaccaaagaa atacccctcc ccagattctg
     1021 atcagttaca cacaggtaag tagctgtcta cacagagccc tctactttcc ctctgttctc
     1081 aagggcagaa tccaaaactc agaatacatc agtattccca gctgacagct gaagactggt
     1141 acactgcact caggactagt ctgaacagat taccgagcag ggttttttgt ttttggaggt
     1201 gggcaggagg gtttacacca ggggagtggg tattcaaggc aggtgccccc caccccaaaa
     1261 cagacacctt tctgtcaaat aaggcagagg tctgcttcct tacctgtaaa aacagggtta
     1321 gtaataaacc ctgccctcgt agggtttggt taggattagg ggagatcact taaagacttt
     1381 acccagtccc agactcttgg gagaaggtcc ataaatggag aacagaaaat agaacgggta
     1441 attggttgat ccttgagagc agtaacaaga aattctttgc acattgtgcc ttatacagca
     1501 ctgggaagag gaacaacccc tttattgaca aaaagcaggt gcagattaaa tcggcgaaga
     1561 aagaatggac gtttctggcg gttgcttact gatctgtgaa acgaactgaa tgaccgattg
     1621 gtccgggtct ctgagcaact gacagtcccg ggctgctgtc aggcgaacgc gggcctggat
     1681 ctggctgacg gctgtggggt gccccagtgc ctcagactga ccgtcgggct gtcctcgctg
     1741 tcaatcccgg ccccggccgg cccggacctc cgtcgctagc tgcagaagcg gggggcatcc
     1801 caactctcca cgaggagctc gagggtgtcg ccgccaggca gggcgtgcgc gcgctgcagg
     1861 agccaagctc cgcgccgcgg ccccttcctc cccgccgggg gcagggcgcc tccgactcgc
     1921 ggctgcagag ccccggaaca acaaggcgcc ggcttcttta agggagatac caccgcgcca
     1981 gcggagcagg ggcgtcttcc cagatgatcg cagccagccc cgcgccgccg ccgccgctgc
     2041 cacctcagca actgcaccgc ccgcaaacat ggctcagtga ctctgacaaa aggtgcagcc
     2101 tccctccagg cggggcgggc gccaggcctc ccagctcggg ctgcacctcc ccgcgggtcc
     2161 gcggaaaagg cccgcttacc gcaggcatcc caggcccgcg cggaggaaga tgcaccaggc
     2221 gttccacccc agcgaccccg catacctgcc cgcagctcga aaccttgacc ttgaagatgg
     2281 tgagtagcca gccaaagtac gatctaatac gggaggtagg ccgaggtagt tacggtgttg
     2341 tatatgaagc agtcatcaga aagacctctg cacgggtggc agtgaagaaa attcgatgcc
     2401 atgcacctga aaatgttgaa ctagccctgc gtgagttctg ggcactaagc agtatcaaga
     2461 gccagcatcc aaatgtgatt cacttggagg aatgcatcct acaaaaggat gggatggtgc
     2521 aaaagatgtc ccacggctct aattcttccc tttatttaca gcttgtagag acttcactaa
     2581 agggagaaat tgcctttgat cccagaagcg cctattactt gtggtttgtg atggattttt
     2641 gtgatggagg agatatgaat gagtatctgt tgtccaggaa acccaatcgt aaaactaaca
     2701 ccagcttcat gcttcagctg agcagtgccc tggctttctt gcataaaaac cagatcatcc
     2761 atcgagatct aaagcctgat aacatcctga tttctcagag ccggttggat accagtgact
     2821 tggaacccac actgaaagtg gctgattttg gtctaagtaa agtttgttca gcatttgggc
     2881 agaatccaga agaacccgtc agtgtaaaca agtgtttcct ttccacagcg tgtggaacag
     2941 atttctacat ggctcctgaa gtgtgggagg gacattacac agcaaaagct gacatctttg
     3001 ctctggggat tatcatctgg gcaatgctgg aaaggatcac attcatagac acagagacaa
     3061 agaaggaact cttggggagt tatgtaaaac aaggaactga gatcgtgcct gttggggagg
     3121 cacttctgga aaatcccaaa atggaacttc tcattcctgt gaagaaaaag tctatgaatg
     3181 ggcgaatgaa acaactgatt aaggaaatgc tggctgcaaa ccctcaggat cgtccagatg
     3241 cttttgaact agaactcaga ttagtacaaa ttgcatttaa agatagcagc tgggaaacgt
     3301 gacacatata ttatttgcaa atatcttgga taatatgctg cttctgtttt aacagtgatg
     3361 caacataatg tggctgaaaa agaatataaa aagctaaact ccacctttta agggtttaga
     3421 ttttattgtg ggattttttt ttcctcattt ttcttaagtc caagctggcc attttgttaa
     3481 tatgttttaa gtgtgtatta ccaatgtgag tgtaaatttt tttaaatgat cattggtaga
     3541 agtttggcag gaaaattttc taagagccaa gaaaagaaga aagtccagtt ttctggaaat
     3601 atgtctctaa gtattttaga cattccttgt cagtattagg aatttccatg gaagaagggg
     3661 tttgcatgct ggtaatgcaa cctttgaagc tttgtaaagg aaacataaat gtatatattt
     3721 atgtatatgt aagtatgtga atgtgtgcat tttgcattcc atatgaaaaa aatgccactt
     3781 ctgtttaaat tatttgatgt aggtttgggt ttttgagatt tgctggtgaa atcagtgatg
     3841 aaaaataaaa gaaccttccc tcatctccta ccctgtccct ccctctaatg aaatcatcct
     3901 aagtttttta tttttataat attatacagc ttttttttta aggcatcatt ttggagagtc
     3961 taaaattatc tgattaaacg taagtgaaat taagtgatcc aaagctgctg aagtatgttt
     4021 gagctctcca gtgccctaaa gctgcaggag ttgaattagc catgcaatca tgtggtacag
     4081 gttggcaagg acactgatga ttcagtcata ccttctttag ataaccacgc attcaattaa
     4141 ctaattaaac cactgcattg ggacatgtct gcacttgagc atctgcaatc tgatacagat
     4201 ttgaacacag gattcttctg tatctgaaaa ctttgctgta tatgaactat agtaattgat
     4261 atattaattt tttatttcaa gactttgtca aagcctcagc atcaagtcga agaaaccaaa
     4321 tgagttctac cctcacgttg cctgccctaa tatggtctct catttaatca ctggagtttc
     4381 tttcattttg gcactaatgc tgttttgtct aatttgacac agtaatggta gtgatatggt
     4441 tgtattcatt gttgatcacc tttttctaaa gtgggaaatg atacagtttg gcaaatgggt
     4501 aaaatactgt ggcataagtt atatctttca aatagagagg ttatcagttt tatacaatca
     4561 cttggtatgg tctgtgtcaa gaaccaacag accattattc ttcttgaagt cagtttgatt
     4621 ttaaccccat atggttgtct ccaatttttt ttcctgtaaa tgcaggtagt tcaaatgtaa
     4681 gggaagaaag ttttcctaaa acagaacatt aacaaccttt aaggttgtta atactttaag
     4741 accattgtat atagattaat ctttataaag cactagactc tttggtcaaa agttaaaaaa
     4801 agaaatttta aaaggtatta gaattttgaa atcattgata attcagtctc ggttttttga
     4861 acttccacaa cttttggaat attcctatca taattttttc cttatttaaa atgtgttcgg
     4921 gggactataa aaggtgaaaa agcacaaaaa attggagtac ataaaatttc tgaactatgc
     4981 attacttggt atgaagtttg aataataact gaaaggtttt attaaaaata aaacctttta
     5041 agtaaaaaaa aatcatatac ttttaatatt actctcaagc tgataaatat aagaattctt
     5101 ttggaaatta gaggtggaaa tacactggaa cttcatgata attaaccctc tggatagcca
     5161 aattagtata agacagatct ggccaagggg attgagttac tggaagtaaa aaaacattat
     5221 aatgtctaat caataacatg gcacttcagc aagagattca tggtgactta ggtgatggta
     5281 tgccaatgct tcatttgctc ttcagatatc tacatgtcat ggttttggcc ccacctcatt
     5341 taaaatagtt aacaattata atttattttg aaaaatattc tatgttacct atgaagtgga
     5401 attatttctt tcattggcgg taacaatgta aggtgatcag gaagtttctt ctgaaatttt
     5461 ctcaagtcct tgtattctaa aataacccat gataccaaga aaaattatag taaattcttt
     5521 gtctttattc tttcagtcag gaggtattta ttaagtacct actgtgtgct cagcactaaa
     5581 gatcacttga taaaataaga attaaaaaat ggtatatagc catgggcctt ttccagccag
     5641 gagtaagaaa taaaagatga ttagtgaaac tgggaaattc ctgtatattg ctaggggaaa
     5701 aatgaaagca agaatttgtg cacagtgcct tgcgcataat aggtactcaa taaacaatta
     5761 ttcctcatag agtcttttgc catggtttat agtgttttat gaaatttgtc ttaattgaaa
     5821 aaagaccaaa tatttcaaat aagcttatag gcagctgtgg ccagttaaaa taatggggtt
     5881 gtacagttag ttcctagaat gttattttgc actagttgtc acttagaaag atggggttcc
     5941 tgtagttttt tggtgctaag ggatactttg tcattatgat gaagtaaatg ttaagtgtca
     6001 gataaatagc acactgaata gttctttctg ctggtctgtt ttttcctctt tgttgttgtt
     6061 gtttttaact gtaaaatgtt tatcaatcaa actattgtag cagctacaga taattcacca
     6121 gcatgacaaa atggtcaaaa aataagtcat cagcacttca aaaatgaaag taacttttga
     6181 aattttcttt ttaaattgtc aaatatattt tatgaagaat ttataaaagg gggaaatgat
     6241 tgtaatttat tgttcatgac tttttttttt taataaagtg aatttcaaca aaaaaa
//
LOCUS       XM_032605949            4145 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PDLIM1 interacting kinase 1 like
            (PDIK1L), transcript variant X2, mRNA.
ACCESSION   XM_032605949
VERSION     XM_032605949.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4145
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4145
                     /gene="PDIK1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 16
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740361"
     CDS             112..1137
                     /gene="PDIK1L"
                     /codon_start=1
                     /product="serine/threonine-protein kinase PDIK1L isoform
                     X2"
                     /protein_id="XP_032461840.1"
                     /db_xref="GeneID:116740361"
                     /translation="MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAP
                     ENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLK
                     GEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQI
                     IHRDLKPDNILISQSRLDTSDLEPTLKVADFGLSKVCSAFGQNPEEPVSVNKCFLSTA
                     CGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEI
                     VPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAF
                     KDSSWET"
     misc_feature    130..1104
                     /gene="PDIK1L"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     PDLIM1 interacting kinase 1 like; Region: STKc_PDIK1L;
                     cd13977"
                     /db_xref="CDD:270879"
     misc_feature    order(151..165,175..177,214..216,220..222,313..315,
                     466..477,487..489,493..495,601..603,607..609,613..618,
                     622..624,679..681,688..690,769..780)
                     /gene="PDIK1L"
                     /note="active site"
                     /db_xref="CDD:270879"
     misc_feature    order(151..165,175..177,214..216,220..222,313..315,
                     466..477,487..489,601..603,607..609,613..618,622..624,
                     679..681)
                     /gene="PDIK1L"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270879"
     misc_feature    order(163..165,487..489,493..495,601..603,607..609,
                     613..615,688..690,769..780)
                     /gene="PDIK1L"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270879"
     misc_feature    order(676..714,736..780)
                     /gene="PDIK1L"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270879"
ORIGIN      
        1 ctgactggag gccgcggcgg ctgaggcgcg agcggcctga taatggcggc ctgcagagcc
       61 cgtgagaggg agaagcggcg gcggctaccc tgagaaacct tgaccttgaa gatggtgagt
      121 agccagccaa agtacgatct aatacgggag gtaggccgag gtagttacgg tgttgtatat
      181 gaagcagtca tcagaaagac ctctgcacgg gtggcagtga agaaaattcg atgccatgca
      241 cctgaaaatg ttgaactagc cctgcgtgag ttctgggcac taagcagtat caagagccag
      301 catccaaatg tgattcactt ggaggaatgc atcctacaaa aggatgggat ggtgcaaaag
      361 atgtcccacg gctctaattc ttccctttat ttacagcttg tagagacttc actaaaggga
      421 gaaattgcct ttgatcccag aagcgcctat tacttgtggt ttgtgatgga tttttgtgat
      481 ggaggagata tgaatgagta tctgttgtcc aggaaaccca atcgtaaaac taacaccagc
      541 ttcatgcttc agctgagcag tgccctggct ttcttgcata aaaaccagat catccatcga
      601 gatctaaagc ctgataacat cctgatttct cagagccggt tggataccag tgacttggaa
      661 cccacactga aagtggctga ttttggtcta agtaaagttt gttcagcatt tgggcagaat
      721 ccagaagaac ccgtcagtgt aaacaagtgt ttcctttcca cagcgtgtgg aacagatttc
      781 tacatggctc ctgaagtgtg ggagggacat tacacagcaa aagctgacat ctttgctctg
      841 gggattatca tctgggcaat gctggaaagg atcacattca tagacacaga gacaaagaag
      901 gaactcttgg ggagttatgt aaaacaagga actgagatcg tgcctgttgg ggaggcactt
      961 ctggaaaatc ccaaaatgga acttctcatt cctgtgaaga aaaagtctat gaatgggcga
     1021 atgaaacaac tgattaagga aatgctggct gcaaaccctc aggatcgtcc agatgctttt
     1081 gaactagaac tcagattagt acaaattgca tttaaagata gcagctggga aacgtgacac
     1141 atatattatt tgcaaatatc ttggataata tgctgcttct gttttaacag tgatgcaaca
     1201 taatgtggct gaaaaagaat ataaaaagct aaactccacc ttttaagggt ttagatttta
     1261 ttgtgggatt tttttttcct catttttctt aagtccaagc tggccatttt gttaatatgt
     1321 tttaagtgtg tattaccaat gtgagtgtaa atttttttaa atgatcattg gtagaagttt
     1381 ggcaggaaaa ttttctaaga gccaagaaaa gaagaaagtc cagttttctg gaaatatgtc
     1441 tctaagtatt ttagacattc cttgtcagta ttaggaattt ccatggaaga aggggtttgc
     1501 atgctggtaa tgcaaccttt gaagctttgt aaaggaaaca taaatgtata tatttatgta
     1561 tatgtaagta tgtgaatgtg tgcattttgc attccatatg aaaaaaatgc cacttctgtt
     1621 taaattattt gatgtaggtt tgggtttttg agatttgctg gtgaaatcag tgatgaaaaa
     1681 taaaagaacc ttccctcatc tcctaccctg tccctccctc taatgaaatc atcctaagtt
     1741 ttttattttt ataatattat acagcttttt ttttaaggca tcattttgga gagtctaaaa
     1801 ttatctgatt aaacgtaagt gaaattaagt gatccaaagc tgctgaagta tgtttgagct
     1861 ctccagtgcc ctaaagctgc aggagttgaa ttagccatgc aatcatgtgg tacaggttgg
     1921 caaggacact gatgattcag tcataccttc tttagataac cacgcattca attaactaat
     1981 taaaccactg cattgggaca tgtctgcact tgagcatctg caatctgata cagatttgaa
     2041 cacaggattc ttctgtatct gaaaactttg ctgtatatga actatagtaa ttgatatatt
     2101 aattttttat ttcaagactt tgtcaaagcc tcagcatcaa gtcgaagaaa ccaaatgagt
     2161 tctaccctca cgttgcctgc cctaatatgg tctctcattt aatcactgga gtttctttca
     2221 ttttggcact aatgctgttt tgtctaattt gacacagtaa tggtagtgat atggttgtat
     2281 tcattgttga tcaccttttt ctaaagtggg aaatgataca gtttggcaaa tgggtaaaat
     2341 actgtggcat aagttatatc tttcaaatag agaggttatc agttttatac aatcacttgg
     2401 tatggtctgt gtcaagaacc aacagaccat tattcttctt gaagtcagtt tgattttaac
     2461 cccatatggt tgtctccaat tttttttcct gtaaatgcag gtagttcaaa tgtaagggaa
     2521 gaaagttttc ctaaaacaga acattaacaa cctttaaggt tgttaatact ttaagaccat
     2581 tgtatataga ttaatcttta taaagcacta gactctttgg tcaaaagtta aaaaaagaaa
     2641 ttttaaaagg tattagaatt ttgaaatcat tgataattca gtctcggttt tttgaacttc
     2701 cacaactttt ggaatattcc tatcataatt ttttccttat ttaaaatgtg ttcgggggac
     2761 tataaaaggt gaaaaagcac aaaaaattgg agtacataaa atttctgaac tatgcattac
     2821 ttggtatgaa gtttgaataa taactgaaag gttttattaa aaataaaacc ttttaagtaa
     2881 aaaaaaatca tatactttta atattactct caagctgata aatataagaa ttcttttgga
     2941 aattagaggt ggaaatacac tggaacttca tgataattaa ccctctggat agccaaatta
     3001 gtataagaca gatctggcca aggggattga gttactggaa gtaaaaaaac attataatgt
     3061 ctaatcaata acatggcact tcagcaagag attcatggtg acttaggtga tggtatgcca
     3121 atgcttcatt tgctcttcag atatctacat gtcatggttt tggccccacc tcatttaaaa
     3181 tagttaacaa ttataattta ttttgaaaaa tattctatgt tacctatgaa gtggaattat
     3241 ttctttcatt ggcggtaaca atgtaaggtg atcaggaagt ttcttctgaa attttctcaa
     3301 gtccttgtat tctaaaataa cccatgatac caagaaaaat tatagtaaat tctttgtctt
     3361 tattctttca gtcaggaggt atttattaag tacctactgt gtgctcagca ctaaagatca
     3421 cttgataaaa taagaattaa aaaatggtat atagccatgg gccttttcca gccaggagta
     3481 agaaataaaa gatgattagt gaaactggga aattcctgta tattgctagg ggaaaaatga
     3541 aagcaagaat ttgtgcacag tgccttgcgc ataataggta ctcaataaac aattattcct
     3601 catagagtct tttgccatgg tttatagtgt tttatgaaat ttgtcttaat tgaaaaaaga
     3661 ccaaatattt caaataagct tataggcagc tgtggccagt taaaataatg gggttgtaca
     3721 gttagttcct agaatgttat tttgcactag ttgtcactta gaaagatggg gttcctgtag
     3781 ttttttggtg ctaagggata ctttgtcatt atgatgaagt aaatgttaag tgtcagataa
     3841 atagcacact gaatagttct ttctgctggt ctgttttttc ctctttgttg ttgttgtttt
     3901 taactgtaaa atgtttatca atcaaactat tgtagcagct acagataatt caccagcatg
     3961 acaaaatggt caaaaaataa gtcatcagca cttcaaaaat gaaagtaact tttgaaattt
     4021 tctttttaaa ttgtcaaata tattttatga agaatttata aaagggggaa atgattgtaa
     4081 tttattgttc atgacttttt ttttttaata aagtgaattt caacaaaaaa accctggaaa
     4141 tgcta
//
LOCUS       XM_032605962            2869 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p73 (TP73), transcript
            variant X1, mRNA.
ACCESSION   XM_032605962
VERSION     XM_032605962.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2869
                     /gene="TP73"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 59 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740367"
     CDS             216..2372
                     /gene="TP73"
                     /codon_start=1
                     /product="tumor protein p73 isoform X1"
                     /protein_id="XP_032461853.1"
                     /db_xref="GeneID:116740367"
                     /translation="MSQSTATDEGATFQHLWSSLEPDSTYFDLPQSGQGNDEVVGGAE
                     ASMDVFHLQGMTTSVMSQFHLLSNTMDQMSSRAAPGSPYAPEHAASANVPTHSPYAQP
                     SSTFDTMSPAPVIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCP
                     IQIKVSTPPPPGTAIRAMPIYKKAEHVTEVVKRCPNHELGRDFNEGQSAPASHLIRVE
                     GNNLSQYVDDPVTGRQSVMVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIIT
                     LETRDGQVLGRRSFEGRICACPGRDRKADEDHFREQQALNESAARSGAASKRAFKQSP
                     PALPALSTNGKKKRHGDEETYYIHVRGRENFEILMKVKESLELMELVPQQLVESYRQQ
                     QQLLQRPSHLQPPSYGPVLSPVSKAHGAINKLPSVNQLVGQPPLHGSAAAPSLGPMGS
                     GILNNHGHALPANGEINGGPSSQSMVSGSHCTPPPPYHADPSLVSFLTGLGCPNCVEC
                     FTSQGLQSIYHLQNLTMEGEAEAQTACRARTATECLVPDVQGPGGPEGPGPAPNDHLE
                     GPPGPEAEPRLWRAAADPLQQQRGHHRRRGLWGAAAAAGHGGRALPRAPHHHHPQPRG
                     PGWGCGARRVGRLRLRPPGLQVPQTVHQRGVHGERGQLRWGRHIQGPPDPVLPTQRAE
                     SPGSRAGCLLPFCHQLPWEAGPLGCARKGTWAGGCP"
     misc_feature    594..1142
                     /gene="TP73"
                     /note="P53 DNA-binding domain; Region: P53; cd08367"
                     /db_xref="CDD:176262"
     misc_feature    order(795..797,804..806,987..989,999..1001)
                     /gene="TP73"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:176262"
     misc_feature    order(798..806,810..812)
                     /gene="TP73"
                     /note="dimerization site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:176262"
     misc_feature    order(990..992,996..998,1017..1019,1092..1094,1098..1106,
                     1113..1115)
                     /gene="TP73"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176262"
     misc_feature    1248..1367
                     /gene="TP73"
                     /note="P53 tetramerization motif; Region: P53_tetramer;
                     pfam07710"
                     /db_xref="CDD:462238"
     misc_feature    1674..>1793
                     /gene="TP73"
                     /note="SAM (Sterile alpha motif); Region: SAM_superfamily;
                     cl15755"
                     /db_xref="CDD:472832"
ORIGIN      
        1 gcgtcctttg ttcacggcca caggcgggga cgggtcttga gcaccgggac cggaatgagc
       61 tgtgcccgga gctgagatgg cagggcctct gggcagcttt ggggcagcag cttctccaag
      121 cccgtcctgc cagcattcgg aaactaacat ggacggcggg gagaaggttg cgggacacac
      181 agcagagcaa gctgccctcg gccgggagtg ggaagatgtc gcagtccacc gccaccgacg
      241 agggggccac gttccagcac ctctggagct ctctggagcc ggacagcacc tactttgacc
      301 ttccccagtc gggccagggg aatgatgagg tggtgggtgg tgccgaggcc agcatggatg
      361 tcttccacct gcagggcatg accacttctg tcatgtccca gttccatttg ctgagcaaca
      421 ccatggacca gatgagcagc cgcgcggccc cgggcagccc ctacgccccg gagcacgccg
      481 ctagcgccaa cgtgcccacc cactcgccct acgcgcagcc cagctccacc ttcgacacca
      541 tgtcgcccgc gcctgtcatc ccctccaaca ccgactaccc cggcccgcac cacttcgagg
      601 tgaccttcca gcagtcgagc acagccaagt cggccacctg gacgtattct cctctgctaa
      661 agaagcttta ctgccaaatc gccaagacgt gccccatcca gatcaaggtg tccaccccgc
      721 cgcccccggg caccgccatc cgcgccatgc ccatctacaa gaaggcggag cacgtgaccg
      781 aggtcgtgaa gcgctgcccc aaccacgagc tcgggcggga cttcaacgaa ggacagtctg
      841 ctcccgccag ccacctcatc cgcgtggagg gcaacaacct ttcgcagtac gtggacgacc
      901 ccgtcaccgg caggcagagc gtcatggtgc cctacgagcc cccgcaggtg gggacagagt
      961 tcaccaccat cctgtacaac ttcatgtgca acagcagctg tgtcgggggc atgaaccggc
     1021 ggcccatcct catcatcatt accctggaga cgcgggacgg acaggtgctg ggccgccggt
     1081 ccttcgaggg ccgcatctgt gcctgtcctg gccgagaccg caaggcggat gaagaccact
     1141 tccgcgaaca gcaggccctg aacgagagcg ctgccaggag cggggctgcc agcaagcgcg
     1201 ccttcaagca gagcccccct gctctccctg ccctgagcac caacgggaag aagaagcggc
     1261 acggggacga ggaaacctac tacatccacg tacggggccg ggagaacttt gaaatcctga
     1321 tgaaggtcaa ggagagcctg gagttgatgg agctggtgcc ccagcagctg gtggagtcct
     1381 accggcagca gcagcagctc ctgcagaggc cgagccacct gcagcctccg tcctacgggc
     1441 ccgtcctctc gcccgtgagc aaagcgcacg gggctatcaa caagctgccc tccgtcaacc
     1501 agctggtggg ccagcctccc ctgcacggct cggcggccgc gcccagcctg gggcccatgg
     1561 gctccgggat actcaacaac cacggccacg ccctgccggc caacggtgag ataaacggcg
     1621 gccccagctc ccagtccatg gtctcggggt cccactgtac cccgccaccc ccctaccacg
     1681 ccgaccccag cctggtcagc tttttaacag gcttggggtg tccaaactgt gtcgagtgct
     1741 tcacctccca gggcttacag agcatttacc acctgcagaa cctaacgatg gagggagaag
     1801 ccgaggccca aactgcttgc cgtgcacgca cagcgactga atgtctggtc ccggatgtgc
     1861 agggacctgg gggccctgaa ggtcccggac cagcaccgaa tgaccatctg gaggggcctc
     1921 caggacctga agcagagcca cgactatggc gcgcagcagc tgatccgctc cagcagcaac
     1981 gcggccacca tcgccgtcgg gggctctggg gagctgcagc ggcagcgggt catggaggcc
     2041 gtgcacttcc gcgtgcgcca caccatcacc atccccaacc gcgggggccc ggctgggggt
     2101 gcggggcccg acgagtgggc cgacttcggc ttcgacctcc cggactgcaa gtcccgcaaa
     2161 cagtccatca aagaggagtt cacggagagc gaggccaact gaggtggggc cggcacatcc
     2221 agggcccccc tgacccggtg ctaccgaccc agagagcaga gagccccggg agccgcgctg
     2281 gatgtctgct tcctttttgt caccaactgc cttgggaggc aggacctctg ggctgtgcca
     2341 ggaaagggac ttgggcaggg ggatgcccct gaggaggggc tccgggagct gcactgaggg
     2401 tgcacgccca ggacccatcc tccaggggtc cggggggcct ccccctccct gccttgcctt
     2461 cctgggggct gtgctgaccg actgccaaaa agtatttttc gatgtctctg gctctgggta
     2521 gcaacacggc tcggtgcttg tacctaaaca ctcctgtttt cgggtcaagg ttccagacta
     2581 catctctgcc tgaggctgtc cctctgctgg tcttgagggt cagtctgccc ttgcgcacct
     2641 gaccgctggt gcaaagccca ctgcagccac ctcccacttc ctgccccaaa caaaaaccag
     2701 agtttcactg gaatcgggga ggcaaggaaa ctcctggtcg gcggcctcca gccagcaccc
     2761 gtgccaatac cgctggctgc agcccctctc tccagtggcc ctcttagcat agacacggac
     2821 agcaggctcc ccagaccact ggaaagtgtc aatatttgat aaaatgatg
//
LOCUS       XM_032605971            2808 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p73 (TP73), transcript
            variant X2, mRNA.
ACCESSION   XM_032605971
VERSION     XM_032605971.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2808
                     /gene="TP73"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 59 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740367"
     CDS             155..2311
                     /gene="TP73"
                     /codon_start=1
                     /product="tumor protein p73 isoform X1"
                     /protein_id="XP_032461862.1"
                     /db_xref="GeneID:116740367"
                     /translation="MSQSTATDEGATFQHLWSSLEPDSTYFDLPQSGQGNDEVVGGAE
                     ASMDVFHLQGMTTSVMSQFHLLSNTMDQMSSRAAPGSPYAPEHAASANVPTHSPYAQP
                     SSTFDTMSPAPVIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCP
                     IQIKVSTPPPPGTAIRAMPIYKKAEHVTEVVKRCPNHELGRDFNEGQSAPASHLIRVE
                     GNNLSQYVDDPVTGRQSVMVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIIT
                     LETRDGQVLGRRSFEGRICACPGRDRKADEDHFREQQALNESAARSGAASKRAFKQSP
                     PALPALSTNGKKKRHGDEETYYIHVRGRENFEILMKVKESLELMELVPQQLVESYRQQ
                     QQLLQRPSHLQPPSYGPVLSPVSKAHGAINKLPSVNQLVGQPPLHGSAAAPSLGPMGS
                     GILNNHGHALPANGEINGGPSSQSMVSGSHCTPPPPYHADPSLVSFLTGLGCPNCVEC
                     FTSQGLQSIYHLQNLTMEGEAEAQTACRARTATECLVPDVQGPGGPEGPGPAPNDHLE
                     GPPGPEAEPRLWRAAADPLQQQRGHHRRRGLWGAAAAAGHGGRALPRAPHHHHPQPRG
                     PGWGCGARRVGRLRLRPPGLQVPQTVHQRGVHGERGQLRWGRHIQGPPDPVLPTQRAE
                     SPGSRAGCLLPFCHQLPWEAGPLGCARKGTWAGGCP"
     misc_feature    533..1081
                     /gene="TP73"
                     /note="P53 DNA-binding domain; Region: P53; cd08367"
                     /db_xref="CDD:176262"
     misc_feature    order(734..736,743..745,926..928,938..940)
                     /gene="TP73"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:176262"
     misc_feature    order(737..745,749..751)
                     /gene="TP73"
                     /note="dimerization site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:176262"
     misc_feature    order(929..931,935..937,956..958,1031..1033,1037..1045,
                     1052..1054)
                     /gene="TP73"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176262"
     misc_feature    1187..1306
                     /gene="TP73"
                     /note="P53 tetramerization motif; Region: P53_tetramer;
                     pfam07710"
                     /db_xref="CDD:462238"
     misc_feature    1613..>1732
                     /gene="TP73"
                     /note="SAM (Sterile alpha motif); Region: SAM_superfamily;
                     cl15755"
                     /db_xref="CDD:472832"
ORIGIN      
        1 cgcgcccgcg cccgcccggc tgcacccgcc tctcggcccg cgcctgcctt gcgcccccga
       61 aggggttacg cggctaagcc ggggcgggct agggcataga ttcctggggc tccgacggca
      121 ccagagcaag ctgccctcgg ccgggagtgg gaagatgtcg cagtccaccg ccaccgacga
      181 gggggccacg ttccagcacc tctggagctc tctggagccg gacagcacct actttgacct
      241 tccccagtcg ggccagggga atgatgaggt ggtgggtggt gccgaggcca gcatggatgt
      301 cttccacctg cagggcatga ccacttctgt catgtcccag ttccatttgc tgagcaacac
      361 catggaccag atgagcagcc gcgcggcccc gggcagcccc tacgccccgg agcacgccgc
      421 tagcgccaac gtgcccaccc actcgcccta cgcgcagccc agctccacct tcgacaccat
      481 gtcgcccgcg cctgtcatcc cctccaacac cgactacccc ggcccgcacc acttcgaggt
      541 gaccttccag cagtcgagca cagccaagtc ggccacctgg acgtattctc ctctgctaaa
      601 gaagctttac tgccaaatcg ccaagacgtg ccccatccag atcaaggtgt ccaccccgcc
      661 gcccccgggc accgccatcc gcgccatgcc catctacaag aaggcggagc acgtgaccga
      721 ggtcgtgaag cgctgcccca accacgagct cgggcgggac ttcaacgaag gacagtctgc
      781 tcccgccagc cacctcatcc gcgtggaggg caacaacctt tcgcagtacg tggacgaccc
      841 cgtcaccggc aggcagagcg tcatggtgcc ctacgagccc ccgcaggtgg ggacagagtt
      901 caccaccatc ctgtacaact tcatgtgcaa cagcagctgt gtcgggggca tgaaccggcg
      961 gcccatcctc atcatcatta ccctggagac gcgggacgga caggtgctgg gccgccggtc
     1021 cttcgagggc cgcatctgtg cctgtcctgg ccgagaccgc aaggcggatg aagaccactt
     1081 ccgcgaacag caggccctga acgagagcgc tgccaggagc ggggctgcca gcaagcgcgc
     1141 cttcaagcag agcccccctg ctctccctgc cctgagcacc aacgggaaga agaagcggca
     1201 cggggacgag gaaacctact acatccacgt acggggccgg gagaactttg aaatcctgat
     1261 gaaggtcaag gagagcctgg agttgatgga gctggtgccc cagcagctgg tggagtccta
     1321 ccggcagcag cagcagctcc tgcagaggcc gagccacctg cagcctccgt cctacgggcc
     1381 cgtcctctcg cccgtgagca aagcgcacgg ggctatcaac aagctgccct ccgtcaacca
     1441 gctggtgggc cagcctcccc tgcacggctc ggcggccgcg cccagcctgg ggcccatggg
     1501 ctccgggata ctcaacaacc acggccacgc cctgccggcc aacggtgaga taaacggcgg
     1561 ccccagctcc cagtccatgg tctcggggtc ccactgtacc ccgccacccc cctaccacgc
     1621 cgaccccagc ctggtcagct ttttaacagg cttggggtgt ccaaactgtg tcgagtgctt
     1681 cacctcccag ggcttacaga gcatttacca cctgcagaac ctaacgatgg agggagaagc
     1741 cgaggcccaa actgcttgcc gtgcacgcac agcgactgaa tgtctggtcc cggatgtgca
     1801 gggacctggg ggccctgaag gtcccggacc agcaccgaat gaccatctgg aggggcctcc
     1861 aggacctgaa gcagagccac gactatggcg cgcagcagct gatccgctcc agcagcaacg
     1921 cggccaccat cgccgtcggg ggctctgggg agctgcagcg gcagcgggtc atggaggccg
     1981 tgcacttccg cgtgcgccac accatcacca tccccaaccg cgggggcccg gctgggggtg
     2041 cggggcccga cgagtgggcc gacttcggct tcgacctccc ggactgcaag tcccgcaaac
     2101 agtccatcaa agaggagttc acggagagcg aggccaactg aggtggggcc ggcacatcca
     2161 gggcccccct gacccggtgc taccgaccca gagagcagag agccccggga gccgcgctgg
     2221 atgtctgctt cctttttgtc accaactgcc ttgggaggca ggacctctgg gctgtgccag
     2281 gaaagggact tgggcagggg gatgcccctg aggaggggct ccgggagctg cactgagggt
     2341 gcacgcccag gacccatcct ccaggggtcc ggggggcctc cccctccctg ccttgccttc
     2401 ctgggggctg tgctgaccga ctgccaaaaa gtatttttcg atgtctctgg ctctgggtag
     2461 caacacggct cggtgcttgt acctaaacac tcctgttttc gggtcaaggt tccagactac
     2521 atctctgcct gaggctgtcc ctctgctggt cttgagggtc agtctgccct tgcgcacctg
     2581 accgctggtg caaagcccac tgcagccacc tcccacttcc tgccccaaac aaaaaccaga
     2641 gtttcactgg aatcggggag gcaaggaaac tcctggtcgg cggcctccag ccagcacccg
     2701 tgccaatacc gctggctgca gcccctctct ccagtggccc tcttagcata gacacggaca
     2761 gcaggctccc cagaccactg gaaagtgtca atatttgata aaatgatg
//
LOCUS       XM_032605982            2811 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p73 (TP73), transcript
            variant X3, mRNA.
ACCESSION   XM_032605982
VERSION     XM_032605982.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2811
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2811
                     /gene="TP73"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 59 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740367"
     CDS             158..2314
                     /gene="TP73"
                     /codon_start=1
                     /product="tumor protein p73 isoform X1"
                     /protein_id="XP_032461873.1"
                     /db_xref="GeneID:116740367"
                     /translation="MSQSTATDEGATFQHLWSSLEPDSTYFDLPQSGQGNDEVVGGAE
                     ASMDVFHLQGMTTSVMSQFHLLSNTMDQMSSRAAPGSPYAPEHAASANVPTHSPYAQP
                     SSTFDTMSPAPVIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCP
                     IQIKVSTPPPPGTAIRAMPIYKKAEHVTEVVKRCPNHELGRDFNEGQSAPASHLIRVE
                     GNNLSQYVDDPVTGRQSVMVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIIT
                     LETRDGQVLGRRSFEGRICACPGRDRKADEDHFREQQALNESAARSGAASKRAFKQSP
                     PALPALSTNGKKKRHGDEETYYIHVRGRENFEILMKVKESLELMELVPQQLVESYRQQ
                     QQLLQRPSHLQPPSYGPVLSPVSKAHGAINKLPSVNQLVGQPPLHGSAAAPSLGPMGS
                     GILNNHGHALPANGEINGGPSSQSMVSGSHCTPPPPYHADPSLVSFLTGLGCPNCVEC
                     FTSQGLQSIYHLQNLTMEGEAEAQTACRARTATECLVPDVQGPGGPEGPGPAPNDHLE
                     GPPGPEAEPRLWRAAADPLQQQRGHHRRRGLWGAAAAAGHGGRALPRAPHHHHPQPRG
                     PGWGCGARRVGRLRLRPPGLQVPQTVHQRGVHGERGQLRWGRHIQGPPDPVLPTQRAE
                     SPGSRAGCLLPFCHQLPWEAGPLGCARKGTWAGGCP"
     misc_feature    536..1084
                     /gene="TP73"
                     /note="P53 DNA-binding domain; Region: P53; cd08367"
                     /db_xref="CDD:176262"
     misc_feature    order(737..739,746..748,929..931,941..943)
                     /gene="TP73"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:176262"
     misc_feature    order(740..748,752..754)
                     /gene="TP73"
                     /note="dimerization site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:176262"
     misc_feature    order(932..934,938..940,959..961,1034..1036,1040..1048,
                     1055..1057)
                     /gene="TP73"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176262"
     misc_feature    1190..1309
                     /gene="TP73"
                     /note="P53 tetramerization motif; Region: P53_tetramer;
                     pfam07710"
                     /db_xref="CDD:462238"
     misc_feature    1616..>1735
                     /gene="TP73"
                     /note="SAM (Sterile alpha motif); Region: SAM_superfamily;
                     cl15755"
                     /db_xref="CDD:472832"
ORIGIN      
        1 cacgtgggtg ctagaccaac cgtcagattc aaacaaactg ccgggcaacc ccactgctcc
       61 aggccgggcc caggtgccgg agggaggccg tccctgtccc tggcctggct gcgggaccgg
      121 gaccgagagc aagctgccct cggccgggag tgggaagatg tcgcagtcca ccgccaccga
      181 cgagggggcc acgttccagc acctctggag ctctctggag ccggacagca cctactttga
      241 ccttccccag tcgggccagg ggaatgatga ggtggtgggt ggtgccgagg ccagcatgga
      301 tgtcttccac ctgcagggca tgaccacttc tgtcatgtcc cagttccatt tgctgagcaa
      361 caccatggac cagatgagca gccgcgcggc cccgggcagc ccctacgccc cggagcacgc
      421 cgctagcgcc aacgtgccca cccactcgcc ctacgcgcag cccagctcca ccttcgacac
      481 catgtcgccc gcgcctgtca tcccctccaa caccgactac cccggcccgc accacttcga
      541 ggtgaccttc cagcagtcga gcacagccaa gtcggccacc tggacgtatt ctcctctgct
      601 aaagaagctt tactgccaaa tcgccaagac gtgccccatc cagatcaagg tgtccacccc
      661 gccgcccccg ggcaccgcca tccgcgccat gcccatctac aagaaggcgg agcacgtgac
      721 cgaggtcgtg aagcgctgcc ccaaccacga gctcgggcgg gacttcaacg aaggacagtc
      781 tgctcccgcc agccacctca tccgcgtgga gggcaacaac ctttcgcagt acgtggacga
      841 ccccgtcacc ggcaggcaga gcgtcatggt gccctacgag cccccgcagg tggggacaga
      901 gttcaccacc atcctgtaca acttcatgtg caacagcagc tgtgtcgggg gcatgaaccg
      961 gcggcccatc ctcatcatca ttaccctgga gacgcgggac ggacaggtgc tgggccgccg
     1021 gtccttcgag ggccgcatct gtgcctgtcc tggccgagac cgcaaggcgg atgaagacca
     1081 cttccgcgaa cagcaggccc tgaacgagag cgctgccagg agcggggctg ccagcaagcg
     1141 cgccttcaag cagagccccc ctgctctccc tgccctgagc accaacggga agaagaagcg
     1201 gcacggggac gaggaaacct actacatcca cgtacggggc cgggagaact ttgaaatcct
     1261 gatgaaggtc aaggagagcc tggagttgat ggagctggtg ccccagcagc tggtggagtc
     1321 ctaccggcag cagcagcagc tcctgcagag gccgagccac ctgcagcctc cgtcctacgg
     1381 gcccgtcctc tcgcccgtga gcaaagcgca cggggctatc aacaagctgc cctccgtcaa
     1441 ccagctggtg ggccagcctc ccctgcacgg ctcggcggcc gcgcccagcc tggggcccat
     1501 gggctccggg atactcaaca accacggcca cgccctgccg gccaacggtg agataaacgg
     1561 cggccccagc tcccagtcca tggtctcggg gtcccactgt accccgccac ccccctacca
     1621 cgccgacccc agcctggtca gctttttaac aggcttgggg tgtccaaact gtgtcgagtg
     1681 cttcacctcc cagggcttac agagcattta ccacctgcag aacctaacga tggagggaga
     1741 agccgaggcc caaactgctt gccgtgcacg cacagcgact gaatgtctgg tcccggatgt
     1801 gcagggacct gggggccctg aaggtcccgg accagcaccg aatgaccatc tggaggggcc
     1861 tccaggacct gaagcagagc cacgactatg gcgcgcagca gctgatccgc tccagcagca
     1921 acgcggccac catcgccgtc gggggctctg gggagctgca gcggcagcgg gtcatggagg
     1981 ccgtgcactt ccgcgtgcgc cacaccatca ccatccccaa ccgcgggggc ccggctgggg
     2041 gtgcggggcc cgacgagtgg gccgacttcg gcttcgacct cccggactgc aagtcccgca
     2101 aacagtccat caaagaggag ttcacggaga gcgaggccaa ctgaggtggg gccggcacat
     2161 ccagggcccc cctgacccgg tgctaccgac ccagagagca gagagccccg ggagccgcgc
     2221 tggatgtctg cttccttttt gtcaccaact gccttgggag gcaggacctc tgggctgtgc
     2281 caggaaaggg acttgggcag ggggatgccc ctgaggaggg gctccgggag ctgcactgag
     2341 ggtgcacgcc caggacccat cctccagggg tccggggggc ctccccctcc ctgccttgcc
     2401 ttcctggggg ctgtgctgac cgactgccaa aaagtatttt tcgatgtctc tggctctggg
     2461 tagcaacacg gctcggtgct tgtacctaaa cactcctgtt ttcgggtcaa ggttccagac
     2521 tacatctctg cctgaggctg tccctctgct ggtcttgagg gtcagtctgc ccttgcgcac
     2581 ctgaccgctg gtgcaaagcc cactgcagcc acctcccact tcctgcccca aacaaaaacc
     2641 agagtttcac tggaatcggg gaggcaagga aactcctggt cggcggcctc cagccagcac
     2701 ccgtgccaat accgctggct gcagcccctc tctccagtgg ccctcttagc atagacacgg
     2761 acagcaggct ccccagacca ctggaaagtg tcaatatttg ataaaatgat g
//
LOCUS       XM_032605990            2119 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p73 (TP73), transcript
            variant X4, mRNA.
ACCESSION   XM_032605990
VERSION     XM_032605990.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2119
                     /gene="TP73"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 78 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740367"
     CDS             18..1970
                     /gene="TP73"
                     /codon_start=1
                     /product="tumor protein p73 isoform X2"
                     /protein_id="XP_032461881.1"
                     /db_xref="GeneID:116740367"
                     /translation="MQSKLPSAGSGKMSQSTATDEGATFQHLWSSLEPDSTYFDLPQS
                     GQGNDEVVGGAEASMDVFHLQGMTTSVMSQFHLLSNTMDQMSSRAAPGSPYAPEHAAS
                     ANVPTHSPYAQPSSTFDTMSPAPVIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLL
                     KKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPIYKKAEHVTEVVKRCPNHELGRDFNEG
                     QSAPASHLIRVEGNNLSQYVDDPVTGRQSVMVPYEPPQVGTEFTTILYNFMCNSSCVG
                     GMNRRPILIIITLETRDGQVLGRRSFEGRICACPGRDRKADEDHFREQQALNESAARS
                     GAASKRAFKQSPPALPALSTNGKKKRHGDEETYYIHVRGRENFEILMKVKESLELMEL
                     VPQQLVESYRQQQQLLQRPSHLQPPSYGPVLSPVSKAHGAINKLPSVNQLVGQPPLHG
                     SAAAPSLGPMGSGILNNHGHALPANGEINGGPSSQSMVSGSHCTPPPPYHADPSLVSF
                     LTGLGCPNCVECFTSQGLQSIYHLQNLTMEDLGALKVPDQHRMTIWRGLQDLKQSHDY
                     GAQQLIRSSSNAATIAVGGSGELQRQRVMEAVHFRVRHTITIPNRGGPAGGAGPDEWA
                     DFGFDLPDCKSRKQSIKEEFTESEAN"
     misc_feature    432..980
                     /gene="TP73"
                     /note="P53 DNA-binding domain; Region: P53; cd08367"
                     /db_xref="CDD:176262"
     misc_feature    order(633..635,642..644,825..827,837..839)
                     /gene="TP73"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:176262"
     misc_feature    order(636..644,648..650)
                     /gene="TP73"
                     /note="dimerization site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:176262"
     misc_feature    order(828..830,834..836,855..857,930..932,936..944,
                     951..953)
                     /gene="TP73"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176262"
     misc_feature    1086..1205
                     /gene="TP73"
                     /note="P53 tetramerization motif; Region: P53_tetramer;
                     pfam07710"
                     /db_xref="CDD:462238"
     misc_feature    1512..1706
                     /gene="TP73"
                     /note="SAM domain of tumor-p73 proteins; Region:
                     SAM_tumor-p73; cd09571"
                     /db_xref="CDD:188970"
ORIGIN      
        1 tccccagcac aggaggcatg caaagcaagc tgccctcggc cgggagtggg aagatgtcgc
       61 agtccaccgc caccgacgag ggggccacgt tccagcacct ctggagctct ctggagccgg
      121 acagcaccta ctttgacctt ccccagtcgg gccaggggaa tgatgaggtg gtgggtggtg
      181 ccgaggccag catggatgtc ttccacctgc agggcatgac cacttctgtc atgtcccagt
      241 tccatttgct gagcaacacc atggaccaga tgagcagccg cgcggccccg ggcagcccct
      301 acgccccgga gcacgccgct agcgccaacg tgcccaccca ctcgccctac gcgcagccca
      361 gctccacctt cgacaccatg tcgcccgcgc ctgtcatccc ctccaacacc gactaccccg
      421 gcccgcacca cttcgaggtg accttccagc agtcgagcac agccaagtcg gccacctgga
      481 cgtattctcc tctgctaaag aagctttact gccaaatcgc caagacgtgc cccatccaga
      541 tcaaggtgtc caccccgccg cccccgggca ccgccatccg cgccatgccc atctacaaga
      601 aggcggagca cgtgaccgag gtcgtgaagc gctgccccaa ccacgagctc gggcgggact
      661 tcaacgaagg acagtctgct cccgccagcc acctcatccg cgtggagggc aacaaccttt
      721 cgcagtacgt ggacgacccc gtcaccggca ggcagagcgt catggtgccc tacgagcccc
      781 cgcaggtggg gacagagttc accaccatcc tgtacaactt catgtgcaac agcagctgtg
      841 tcgggggcat gaaccggcgg cccatcctca tcatcattac cctggagacg cgggacggac
      901 aggtgctggg ccgccggtcc ttcgagggcc gcatctgtgc ctgtcctggc cgagaccgca
      961 aggcggatga agaccacttc cgcgaacagc aggccctgaa cgagagcgct gccaggagcg
     1021 gggctgccag caagcgcgcc ttcaagcaga gcccccctgc tctccctgcc ctgagcacca
     1081 acgggaagaa gaagcggcac ggggacgagg aaacctacta catccacgta cggggccggg
     1141 agaactttga aatcctgatg aaggtcaagg agagcctgga gttgatggag ctggtgcccc
     1201 agcagctggt ggagtcctac cggcagcagc agcagctcct gcagaggccg agccacctgc
     1261 agcctccgtc ctacgggccc gtcctctcgc ccgtgagcaa agcgcacggg gctatcaaca
     1321 agctgccctc cgtcaaccag ctggtgggcc agcctcccct gcacggctcg gcggccgcgc
     1381 ccagcctggg gcccatgggc tccgggatac tcaacaacca cggccacgcc ctgccggcca
     1441 acggtgagat aaacggcggc cccagctccc agtccatggt ctcggggtcc cactgtaccc
     1501 cgccaccccc ctaccacgcc gaccccagcc tggtcagctt tttaacaggc ttggggtgtc
     1561 caaactgtgt cgagtgcttc acctcccagg gcttacagag catttaccac ctgcagaacc
     1621 taacgatgga ggacctgggg gccctgaagg tcccggacca gcaccgaatg accatctgga
     1681 ggggcctcca ggacctgaag cagagccacg actatggcgc gcagcagctg atccgctcca
     1741 gcagcaacgc ggccaccatc gccgtcgggg gctctgggga gctgcagcgg cagcgggtca
     1801 tggaggccgt gcacttccgc gtgcgccaca ccatcaccat ccccaaccgc gggggcccgg
     1861 ctgggggtgc ggggcccgac gagtgggccg acttcggctt cgacctcccg gactgcaagt
     1921 cccgcaaaca gtccatcaaa gaggagttca cggagagcga ggccaactga ggtggggccg
     1981 gcacatccag ggcccccctg acccggtgct accgacccag agagcagaga gccccgggag
     2041 ccgcgctgga tgtctgcttc ctttttgtca ccaactgcct tgggaggcag gacctctggg
     2101 ctgtgccagg aaagggact
//
LOCUS       XM_032606000            1689 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p73 (TP73), transcript
            variant X5, mRNA.
ACCESSION   XM_032606000
VERSION     XM_032606000.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1689
                     /gene="TP73"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 59 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740367"
     CDS             18..1553
                     /gene="TP73"
                     /codon_start=1
                     /product="tumor protein p73 isoform X3"
                     /protein_id="XP_032461891.1"
                     /db_xref="GeneID:116740367"
                     /translation="MQSKLPSAGSGKMSQSTATDEGATFQHLWSSLEPDSTYFDLPQS
                     GQGNDEVVGGAEASMDVFHLQGMTTSVMSQFHLLSNTMDQMSSRAAPGSPYAPEHAAS
                     ANVPTHSPYAQPSSTFDTMSPAPVIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLL
                     KKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPIYKKAEHVTEVVKRCPNHELGRDFNEG
                     QSAPASHLIRVEGNNLSQYVDDPVTGRQSVMVPYEPPQVGTEFTTILYNFMCNSSCVG
                     GMNRRPILIIITLETRDGQVLGRRSFEGRICACPGRDRKADEDHFREQQALNESAARS
                     GAASKRAFKQSPPALPALSTNGKKKRHGDEETYYIHVRGRENFEILMKVKESLELMEL
                     VPQQLVESYRQQQQLLQRPSHLQPPSYGPVLSPVSKAHGAINKLPSVNQLVGQPPLHG
                     SAAAPSLGPMGSGILNNHGHALPANGEINGGPSSQSMVSGSHCTPPPPYHADPSLVRT
                     WGP"
     misc_feature    432..980
                     /gene="TP73"
                     /note="P53 DNA-binding domain; Region: P53; cd08367"
                     /db_xref="CDD:176262"
     misc_feature    order(633..635,642..644,825..827,837..839)
                     /gene="TP73"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:176262"
     misc_feature    order(636..644,648..650)
                     /gene="TP73"
                     /note="dimerization site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:176262"
     misc_feature    order(828..830,834..836,855..857,930..932,936..944,
                     951..953)
                     /gene="TP73"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176262"
     misc_feature    1086..1205
                     /gene="TP73"
                     /note="P53 tetramerization motif; Region: P53_tetramer;
                     pfam07710"
                     /db_xref="CDD:462238"
ORIGIN      
        1 tccccagcac aggaggcatg caaagcaagc tgccctcggc cgggagtggg aagatgtcgc
       61 agtccaccgc caccgacgag ggggccacgt tccagcacct ctggagctct ctggagccgg
      121 acagcaccta ctttgacctt ccccagtcgg gccaggggaa tgatgaggtg gtgggtggtg
      181 ccgaggccag catggatgtc ttccacctgc agggcatgac cacttctgtc atgtcccagt
      241 tccatttgct gagcaacacc atggaccaga tgagcagccg cgcggccccg ggcagcccct
      301 acgccccgga gcacgccgct agcgccaacg tgcccaccca ctcgccctac gcgcagccca
      361 gctccacctt cgacaccatg tcgcccgcgc ctgtcatccc ctccaacacc gactaccccg
      421 gcccgcacca cttcgaggtg accttccagc agtcgagcac agccaagtcg gccacctgga
      481 cgtattctcc tctgctaaag aagctttact gccaaatcgc caagacgtgc cccatccaga
      541 tcaaggtgtc caccccgccg cccccgggca ccgccatccg cgccatgccc atctacaaga
      601 aggcggagca cgtgaccgag gtcgtgaagc gctgccccaa ccacgagctc gggcgggact
      661 tcaacgaagg acagtctgct cccgccagcc acctcatccg cgtggagggc aacaaccttt
      721 cgcagtacgt ggacgacccc gtcaccggca ggcagagcgt catggtgccc tacgagcccc
      781 cgcaggtggg gacagagttc accaccatcc tgtacaactt catgtgcaac agcagctgtg
      841 tcgggggcat gaaccggcgg cccatcctca tcatcattac cctggagacg cgggacggac
      901 aggtgctggg ccgccggtcc ttcgagggcc gcatctgtgc ctgtcctggc cgagaccgca
      961 aggcggatga agaccacttc cgcgaacagc aggccctgaa cgagagcgct gccaggagcg
     1021 gggctgccag caagcgcgcc ttcaagcaga gcccccctgc tctccctgcc ctgagcacca
     1081 acgggaagaa gaagcggcac ggggacgagg aaacctacta catccacgta cggggccggg
     1141 agaactttga aatcctgatg aaggtcaagg agagcctgga gttgatggag ctggtgcccc
     1201 agcagctggt ggagtcctac cggcagcagc agcagctcct gcagaggccg agccacctgc
     1261 agcctccgtc ctacgggccc gtcctctcgc ccgtgagcaa agcgcacggg gctatcaaca
     1321 agctgccctc cgtcaaccag ctggtgggcc agcctcccct gcacggctcg gcggccgcgc
     1381 ccagcctggg gcccatgggc tccgggatac tcaacaacca cggccacgcc ctgccggcca
     1441 acggtgagat aaacggcggc cccagctccc agtccatggt ctcggggtcc cactgtaccc
     1501 cgccaccccc ctaccacgcc gaccccagcc tggtcaggac ctgggggccc tgaaggtccc
     1561 ggaccagcac cgaatgacca tctggagggg cctccaggac ctgaagcaga gccacgacta
     1621 tggcgcgcag cagctgatcc gctccagcag caacgcggcc accatcgccg tcgggggctc
     1681 tggggagct
//
LOCUS       XM_032606014            1017 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus involucrin-like (LOC116740382), mRNA.
ACCESSION   XM_032606014
VERSION     XM_032606014.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1017
                     /gene="LOC116740382"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 58% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740382"
     CDS             1..993
                     /gene="LOC116740382"
                     /codon_start=1
                     /product="involucrin-like"
                     /protein_id="XP_032461905.1"
                     /db_xref="GeneID:116740382"
                     /translation="MSQQLTLPVTLPPAPSKESLKPVSPPTNIQQEQAKQPTPLPAPF
                     QKVSSEFPGKDPMEVGKKHTTPVKEVPKKECEPRQQEPQQQQQQQQQQQESQKPGKPV
                     DQQQQQKESQEPGKPVDQQQQQKESQEPGKPVDQQQQQKESQEPGKPVDQQQQQKESQ
                     KPGKHVQQQQQQKESQEPGKHVEQQQQQKESQEPGKPVDQQQQQKESQKPGKPVDQQQ
                     QQKESQKPGKPPVDQQQQQKESQEPGKPVDQQQQQKESQEPGKPVDQQQQQKESQEPG
                     KPVDQQQQQKESQEPGKHVDQQQQQKESQEPGKHVQQLKQEKKVLGQRLDQELA"
     misc_feature    1..207
                     /gene="LOC116740382"
                     /note="Involucrin of squamous epithelia N-terminus;
                     Region: Involucrin_N; pfam10583"
                     /db_xref="CDD:431372"
ORIGIN      
        1 atgtcccagc aacttactct gccagtgacc ttgccccctg cccccagtaa ggagtccctc
       61 aagcctgttt ctcctcccac caacatccag caggagcaag cgaagcagcc aactccactg
      121 cctgccccat tccagaaggt atcctcggag ttcccaggga aggatcccat ggaggtgggg
      181 aagaaacaca caactcctgt gaaggaggtg cctaagaaag agtgtgagcc acggcaacag
      241 gagccacagc agcagcaaca gcagcagcag cagcagcaag agtcacagaa gccaggaaag
      301 cctgtggacc agcagcagca gcagaaagag tcacaggagc caggaaagcc tgtggaccag
      361 cagcagcagc agaaagagtc acaggagcca ggaaagcctg tggaccagca acagcagcag
      421 aaagagtcac aggagccagg aaagcctgtg gaccagcagc agcagcagaa agagtcacag
      481 aagccaggaa agcatgtgca acagcagcag cagcagaaag agtcacagga gccaggaaag
      541 catgtagaac agcagcagca gcagaaagag tcacaggagc caggaaagcc tgtggaccag
      601 cagcagcagc agaaagagtc acagaagcca ggaaagcctg tggaccagca gcagcagcag
      661 aaagagtcac agaagccagg aaagcctcct gtggaccagc agcagcagca gaaagagtca
      721 caggagccag gaaagcctgt ggaccagcag cagcagcaga aagagtcaca ggagccagga
      781 aagcctgtgg accagcagca gcagcagaaa gagtcacagg agccaggaaa gcctgtggac
      841 cagcagcagc agcagaaaga gtcacaggag ccaggaaagc atgtggacca gcagcagcag
      901 cagaaagagt cacaggagcc aggaaagcat gtgcaacagc tgaaacagga gaagaaggtc
      961 ttgggccagc ggctggatca agagctagca tagaaagatc agcaactgga aaagaaa
//
LOCUS       XM_032606029            1724 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 42
            (LRRC42), transcript variant X1, mRNA.
ACCESSION   XM_032606029
VERSION     XM_032606029.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1724
                     /gene="LRRC42"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 8 long SRA reads, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740387"
     CDS             216..1502
                     /gene="LRRC42"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 42"
                     /protein_id="XP_032461920.1"
                     /db_xref="GeneID:116740387"
                     /translation="MSYYLNSENHLDPGPVYVRENGQLHMVNLALDGVRSSLQKPRPF
                     RLFPKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFNLVLGFISDNVD
                     HIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLRALQKFTEAYGSLVLCSLCLRNRYL
                     VISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEALSSVTQLHLKDNCLSDAGV
                     RKMTAPVRVMKRGLENLTLLDLSCNPDITDAGIGYLFSFRKLNCLDISGTGLKDVKAV
                     KHKLQTHIGLVHSKVPLKEFDHSNCKTEGWADQIVLQWERVTSEAVKPRETSEPGTAA
                     QHFYGKRARTEAPVKCHLADAHMNSSEKLQFYKEKAPDCHGPLLKHEALSGQESKKSK
                     KRAFEEPEKEQSNSSQSSKQKYVCLAVEDWDLLNSY"
     misc_feature    663..719
                     /gene="LRRC42"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    <714..>1031
                     /gene="LRRC42"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    738..821
                     /gene="LRRC42"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    822..917
                     /gene="LRRC42"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    918..992
                     /gene="LRRC42"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
ORIGIN      
        1 agcctttccc ccgcccccga cggccccgcg gtcccaaggc gcaggtcgcc cccagccccc
       61 tcccttctcc cgcacactct ctgtcccacc ctccctagct ttgtgccggg ggcgcggagc
      121 cgcttccccc ttcagccgcg ccgcgggagg agggagccgt cagcgaggag ctgccgctgg
      181 ctgccccagg caggggcaca gttgcaacca aggcaatgtc ttactacctc aactcagaaa
      241 accacctgga cccagggccc gtctacgtgc gagaaaatgg gcaactgcac atggtcaatt
      301 tggccttgga tggtgtcagg agtagcctgc agaagccaag gcctttcaga ctgtttccca
      361 aaggcttttc ggtggagctt tgcatgaaca gggaagatga tactgcacag aaagagaaga
      421 ctgatcattt catcttcaca tacacccggg aggggaatct tcggtattct gccaaatccc
      481 tcttcaacct cgtcctgggc ttcatctctg acaatgttga tcacattgat tcccttattg
      541 gctttcctga gcagattgct gaaaagctgt tctctgctgc tgaagccaga cagaaattca
      601 cagagccagg tgcagggctg agggctttac agaaatttac agaggcctat ggaagtctgg
      661 tgctttgctc cttgtgtttg cgaaacagat atctggtgat ttcagaaaaa ctcgaggaga
      721 ttaagtcttt ccgggagctg acctgcctgg atctatcctg ttgtaagctt ggagatgagc
      781 atgaacttct agaacatctc accaatgagg ccctctctag tgtaactcag ctccacctga
      841 aggataattg tttatctgat gccggggtgc ggaaaatgac ggcaccagtt cgagtgatga
      901 aaagaggcct tgaaaatcta acattattag atttatcttg taaccctgat atcacagatg
      961 caggaattgg atacctcttt tcttttagaa aactaaactg cttagatatc tctgggacgg
     1021 gactcaagga cgtcaaagct gtcaaacaca agcttcagac ccacataggt ctcgttcatt
     1081 ccaaagtgcc tttgaaggaa tttgatcaca gtaactgcaa gacagagggc tgggctgacc
     1141 agattgttct gcagtgggag cgtgtgactt cggaagctgt gaagccacga gaaacctcgg
     1201 agcctggaac agctgctcag catttctatg ggaaacgggc tcgaacagaa gccccagtga
     1261 agtgtcacct ggcagacgcc cacatgaatt cttctgagaa actccagttc tataaagaga
     1321 aagccccaga ttgccatgga ccactgttga aacacgaagc cctctcaggc caggagtcaa
     1381 agaagagcaa gaagagagct ttcgaggagc cagagaagga acagagcaac tcttcacagt
     1441 cttcaaagca gaaatatgtg tgtcttgctg tggaagactg ggacttgtta aattcctatt
     1501 gattggcgga tataagttga ccattttccc ctccaactct aatgtacgag gaaagggggc
     1561 tgatgatgtt ttccttttcg tttgaattta cctatggcat tagcatagca agcggatatt
     1621 tctacttttg tggtggggga ggggaatgct atggaagtat gtaataattt ctaatgtata
     1681 ttttcaatac atagtaattt tttcaaataa acgtttttgc tgtc
//
LOCUS       XM_032606037            1741 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 42
            (LRRC42), transcript variant X2, mRNA.
ACCESSION   XM_032606037
VERSION     XM_032606037.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1741
                     /gene="LRRC42"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740387"
     CDS             233..1519
                     /gene="LRRC42"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 42"
                     /protein_id="XP_032461928.1"
                     /db_xref="GeneID:116740387"
                     /translation="MSYYLNSENHLDPGPVYVRENGQLHMVNLALDGVRSSLQKPRPF
                     RLFPKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFNLVLGFISDNVD
                     HIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLRALQKFTEAYGSLVLCSLCLRNRYL
                     VISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEALSSVTQLHLKDNCLSDAGV
                     RKMTAPVRVMKRGLENLTLLDLSCNPDITDAGIGYLFSFRKLNCLDISGTGLKDVKAV
                     KHKLQTHIGLVHSKVPLKEFDHSNCKTEGWADQIVLQWERVTSEAVKPRETSEPGTAA
                     QHFYGKRARTEAPVKCHLADAHMNSSEKLQFYKEKAPDCHGPLLKHEALSGQESKKSK
                     KRAFEEPEKEQSNSSQSSKQKYVCLAVEDWDLLNSY"
     misc_feature    680..736
                     /gene="LRRC42"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    <731..>1048
                     /gene="LRRC42"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    755..838
                     /gene="LRRC42"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    839..934
                     /gene="LRRC42"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    935..1009
                     /gene="LRRC42"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
ORIGIN      
        1 ccgacggccc cgcggtccca aggcgcaggt cgcccccagc cccctccctt ctcccgcaca
       61 ctctctgtcc caccctccct agctttgtgc cgggggcgcg gagccgcttc ccccttcagc
      121 cgcgccgcgg gaggagggag ccgtcagcga ggagctgccg ctggctgccc caggcagggg
      181 cacagcttga gtcagtgaat accagaggga tccaacagtt gcaaccaagg caatgtctta
      241 ctacctcaac tcagaaaacc acctggaccc agggcccgtc tacgtgcgag aaaatgggca
      301 actgcacatg gtcaatttgg ccttggatgg tgtcaggagt agcctgcaga agccaaggcc
      361 tttcagactg tttcccaaag gcttttcggt ggagctttgc atgaacaggg aagatgatac
      421 tgcacagaaa gagaagactg atcatttcat cttcacatac acccgggagg ggaatcttcg
      481 gtattctgcc aaatccctct tcaacctcgt cctgggcttc atctctgaca atgttgatca
      541 cattgattcc cttattggct ttcctgagca gattgctgaa aagctgttct ctgctgctga
      601 agccagacag aaattcacag agccaggtgc agggctgagg gctttacaga aatttacaga
      661 ggcctatgga agtctggtgc tttgctcctt gtgtttgcga aacagatatc tggtgatttc
      721 agaaaaactc gaggagatta agtctttccg ggagctgacc tgcctggatc tatcctgttg
      781 taagcttgga gatgagcatg aacttctaga acatctcacc aatgaggccc tctctagtgt
      841 aactcagctc cacctgaagg ataattgttt atctgatgcc ggggtgcgga aaatgacggc
      901 accagttcga gtgatgaaaa gaggccttga aaatctaaca ttattagatt tatcttgtaa
      961 ccctgatatc acagatgcag gaattggata cctcttttct tttagaaaac taaactgctt
     1021 agatatctct gggacgggac tcaaggacgt caaagctgtc aaacacaagc ttcagaccca
     1081 cataggtctc gttcattcca aagtgccttt gaaggaattt gatcacagta actgcaagac
     1141 agagggctgg gctgaccaga ttgttctgca gtgggagcgt gtgacttcgg aagctgtgaa
     1201 gccacgagaa acctcggagc ctggaacagc tgctcagcat ttctatggga aacgggctcg
     1261 aacagaagcc ccagtgaagt gtcacctggc agacgcccac atgaattctt ctgagaaact
     1321 ccagttctat aaagagaaag ccccagattg ccatggacca ctgttgaaac acgaagccct
     1381 ctcaggccag gagtcaaaga agagcaagaa gagagctttc gaggagccag agaaggaaca
     1441 gagcaactct tcacagtctt caaagcagaa atatgtgtgt cttgctgtgg aagactggga
     1501 cttgttaaat tcctattgat tggcggatat aagttgacca ttttcccctc caactctaat
     1561 gtacgaggaa agggggctga tgatgttttc cttttcgttt gaatttacct atggcattag
     1621 catagcaagc ggatatttct acttttgtgg tgggggaggg gaatgctatg gaagtatgta
     1681 ataatttcta atgtatattt tcaatacata gtaatttttt caaataaacg tttttgctgt
     1741 c
//
LOCUS       XM_032606048            2411 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus aflatoxin B1 aldehyde reductase member 4
            (LOC116740399), transcript variant X1, mRNA.
ACCESSION   XM_032606048
VERSION     XM_032606048.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2411
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2411
                     /gene="LOC116740399"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 29 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740399"
     CDS             102..1202
                     /gene="LOC116740399"
                     /codon_start=1
                     /product="aflatoxin B1 aldehyde reductase member 4"
                     /protein_id="XP_032461939.1"
                     /db_xref="GeneID:116740399"
                     /translation="MLSNLSRDVARAAVRCARTPRPPEARTAAAMSRGPRTTSGSPIR
                     PATVLGTMEMGRRMDALASAAAVRAFLERGHTELDTAFMYSDGQSESILGGLGLGLGG
                     GDCKVKIATKANPWEGKSLKPDSLRSQLETSLKRLQCPHVDLFYLHAPDHGTPVEETL
                     RACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNNWILPTVYQGMYNATTRQVETEL
                     FPCIRHFGLRFYAYNPLAGGLLTGKYKYEDKDRKQPVGRFFGTNWAEVYRNRFWKEHH
                     FKAIALVEKALQAAYGPSAPSMTSAALRWMYHHSQLQGAHGDAVILGMSSLEQLEQNL
                     VATEEGPLEPAIVQAFDQAWHLVAHECPSYFR"
     misc_feature    234..1163
                     /gene="LOC116740399"
                     /note="AKR7A family of aldo-keto reductase (AKR); Region:
                     AKR_AKR7A1-5; cd19075"
                     /db_xref="CDD:381301"
     misc_feature    order(249..257,270..272,336..338,351..353,435..437,
                     447..449,543..545,633..638,711..713,795..815,822..824,
                     828..833,867..872,888..890,900..902,909..911,996..998,
                     1062..1076,1086..1088,1095..1100)
                     /gene="LOC116740399"
                     /note="active site"
                     /db_xref="CDD:381301"
     misc_feature    order(336..338,351..353,435..437,543..545)
                     /gene="LOC116740399"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381301"
ORIGIN      
        1 gtcatggcga gcgagcgtat cttgcgtgag ggggcgccgc gcttctcccc atcggcaggg
       61 aggcggggcc cgaggcgccc cagcgcgcag gcgccgacct catgctgagc aacttgtctc
      121 gcgacgtggc ccgcgccgcc gtccgctgcg ctcgtacccc ccggccaccc gaggctcgca
      181 ccgccgccgc catgtcccgg ggcccgcgga ccacctcagg ctcccctatc cggcccgcca
      241 ccgtgctggg caccatggag atggggcgcc gcatggacgc gctcgccagc gccgcggcag
      301 tgcgcgcctt cctggagcgc ggccacactg agctggacac ggccttcatg tacagcgacg
      361 gccagtccga gagcatcctg ggcggcctgg ggctcgggct gggcggcggc gactgcaaag
      421 tgaaaatcgc taccaaggcc aatccctggg aagggaagtc gctgaagcct gacagcctcc
      481 ggtcccagct ggagacgtca ctgaagcggc tgcagtgtcc acacgttgac ctcttctatc
      541 tacacgcacc ggaccacggc acccccgtgg aagagacact gcgtgcctgc caccagctgc
      601 accaggaggg caagtttgtg gagcttggcc tctccaacta tgccgcctgg gaagtggccg
      661 agatctgtac cctatgcaag agcaataact ggatcctgcc caccgtgtac cagggcatgt
      721 acaacgccac tacccggcag gtggagacag agctcttccc ctgcatcagg cactttggac
      781 tgaggttcta cgcctacaac cctttggctg ggggcctgct gaccggcaag tacaagtatg
      841 aggacaagga caggaagcaa cctgtgggcc gcttctttgg gaccaattgg gcagaggtct
      901 acaggaatcg cttctggaag gaacaccact tcaaggccat tgccctggtg gagaaggccc
      961 tgcaggctgc atatggcccc agcgccccca gcatgacctc ggccgccctc cggtggatgt
     1021 accaccactc acagctccag ggtgcccacg gggacgcggt catcctgggc atgtccagcc
     1081 tggagcagct ggaacagaac ttggtggcca ctgaagaagg gcccctagag ccagccattg
     1141 tgcaggcctt tgatcaggcc tggcacctgg ttgcccatga atgtcccagc tacttccgct
     1201 aggccccaac acagctcaag ctgcccaaga ttctcagctc tgctgctggg cctccttttg
     1261 gtggtagtgg gtgtgggcag ccaggacccc catttccctc agcaaatccc taccccaagt
     1321 aagggcaccc aagtctggag aagaaatgaa atcccaggtc cagtgattgc tgtttgaaca
     1381 ttcccaggac agaaaaatca caccctgggc gagaggtagg gtgtgggcca ggcagcggca
     1441 gtaggcagca tttggaccag tctcttcaag tgatgaaagg ggctcaacct ggaaatgcag
     1501 acaaaaacca ccaatcaaag actgttcaaa ggaaggtcct acttgccttc tagaaggaga
     1561 cacctttcag atgaagtttt attatttgga gtgaagacac cctcctttgt cttcacccat
     1621 aataaaatgg atgcttcccc agtggggtaa tatcagttat taccccactc atgttaataa
     1681 tagtatcagt tattgtacaa caagccaccc caaaattgag ttgcttaaga ggacgaaatc
     1741 tgaaattgac ctaataaggt tcagttcaag ccctatcaaa accccagctg gatttttttt
     1801 ttttttttac agaaattggc aaaattttta aaaaattcat atggaaattc aagggataca
     1861 gaatagccaa aacaaattta aacaagaaca aagtcctcca attcctgatt tcaaagctta
     1921 ctacaaagct acagaataaa agcagtatgg gactggcata agggtagaca tatagatcga
     1981 tggaacagaa ttgagagtcc agaagtaagc ccataatagc taaaaaatag agacagccca
     2041 gatgtccatc agtggatgaa tggataaata aagagtggta tatccatacc atggactatt
     2101 atttggcgat aaaaaagaat gaagtaatga aacatctaca atgtggatga accttgaaga
     2161 tgttaaccca agtgaaagat gacagttcca aaaggcctca tattgtgtga gctgatgtgc
     2221 gtgaaatgtc tgaaataggc aaatctatta gagacagaaa gtagattagt ggttgcctaa
     2281 ggctgagggg gggttgggag gaaatggaga ttaactgata aggagtacag gtttctttgg
     2341 ggggtgatga aaatgctcta aagttgattg tgatggttgt acaatgctga atacactaag
     2401 aaaaaaaaaa a
//
LOCUS       XM_032606058            1266 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus aflatoxin B1 aldehyde reductase member 4
            (LOC116740399), transcript variant X2, mRNA.
ACCESSION   XM_032606058
VERSION     XM_032606058.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1266
                     /gene="LOC116740399"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 29 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740399"
     CDS             102..1202
                     /gene="LOC116740399"
                     /codon_start=1
                     /product="aflatoxin B1 aldehyde reductase member 4"
                     /protein_id="XP_032461949.1"
                     /db_xref="GeneID:116740399"
                     /translation="MLSNLSRDVARAAVRCARTPRPPEARTAAAMSRGPRTTSGSPIR
                     PATVLGTMEMGRRMDALASAAAVRAFLERGHTELDTAFMYSDGQSESILGGLGLGLGG
                     GDCKVKIATKANPWEGKSLKPDSLRSQLETSLKRLQCPHVDLFYLHAPDHGTPVEETL
                     RACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNNWILPTVYQGMYNATTRQVETEL
                     FPCIRHFGLRFYAYNPLAGGLLTGKYKYEDKDRKQPVGRFFGTNWAEVYRNRFWKEHH
                     FKAIALVEKALQAAYGPSAPSMTSAALRWMYHHSQLQGAHGDAVILGMSSLEQLEQNL
                     VATEEGPLEPAIVQAFDQAWHLVAHECPSYFR"
     misc_feature    234..1163
                     /gene="LOC116740399"
                     /note="AKR7A family of aldo-keto reductase (AKR); Region:
                     AKR_AKR7A1-5; cd19075"
                     /db_xref="CDD:381301"
     misc_feature    order(249..257,270..272,336..338,351..353,435..437,
                     447..449,543..545,633..638,711..713,795..815,822..824,
                     828..833,867..872,888..890,900..902,909..911,996..998,
                     1062..1076,1086..1088,1095..1100)
                     /gene="LOC116740399"
                     /note="active site"
                     /db_xref="CDD:381301"
     misc_feature    order(336..338,351..353,435..437,543..545)
                     /gene="LOC116740399"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381301"
ORIGIN      
        1 gtcatggcga gcgagcgtat cttgcgtgag ggggcgccgc gcttctcccc atcggcaggg
       61 aggcggggcc cgaggcgccc cagcgcgcag gcgccgacct catgctgagc aacttgtctc
      121 gcgacgtggc ccgcgccgcc gtccgctgcg ctcgtacccc ccggccaccc gaggctcgca
      181 ccgccgccgc catgtcccgg ggcccgcgga ccacctcagg ctcccctatc cggcccgcca
      241 ccgtgctggg caccatggag atggggcgcc gcatggacgc gctcgccagc gccgcggcag
      301 tgcgcgcctt cctggagcgc ggccacactg agctggacac ggccttcatg tacagcgacg
      361 gccagtccga gagcatcctg ggcggcctgg ggctcgggct gggcggcggc gactgcaaag
      421 tgaaaatcgc taccaaggcc aatccctggg aagggaagtc gctgaagcct gacagcctcc
      481 ggtcccagct ggagacgtca ctgaagcggc tgcagtgtcc acacgttgac ctcttctatc
      541 tacacgcacc ggaccacggc acccccgtgg aagagacact gcgtgcctgc caccagctgc
      601 accaggaggg caagtttgtg gagcttggcc tctccaacta tgccgcctgg gaagtggccg
      661 agatctgtac cctatgcaag agcaataact ggatcctgcc caccgtgtac cagggcatgt
      721 acaacgccac tacccggcag gtggagacag agctcttccc ctgcatcagg cactttggac
      781 tgaggttcta cgcctacaac cctttggctg ggggcctgct gaccggcaag tacaagtatg
      841 aggacaagga caggaagcaa cctgtgggcc gcttctttgg gaccaattgg gcagaggtct
      901 acaggaatcg cttctggaag gaacaccact tcaaggccat tgccctggtg gagaaggccc
      961 tgcaggctgc atatggcccc agcgccccca gcatgacctc ggccgccctc cggtggatgt
     1021 accaccactc acagctccag ggtgcccacg gggacgcggt catcctgggc atgtccagcc
     1081 tggagcagct ggaacagaac ttggtggcca ctgaagaagg gcccctagag ccagccattg
     1141 tgcaggcctt tgatcaggcc tggcacctgg ttgcccatga atgtcccagc tacttccgct
     1201 aggccccaac acagctcaag ctgcccaagg ggacacaggc ttgatccctg attcaggaag
     1261 atccca
//
LOCUS       XM_032606066             568 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf232 homolog
            (C1H1orf232), mRNA.
ACCESSION   XM_032606066
VERSION     XM_032606066.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..568
                     /gene="C1H1orf232"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 32% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740411"
     CDS             1..546
                     /gene="C1H1orf232"
                     /codon_start=1
                     /product="uncharacterized protein C1orf232 homolog"
                     /protein_id="XP_032461957.1"
                     /db_xref="GeneID:116740411"
                     /translation="MNQTFWKTYKSKVLQTLSGESEEDLAEEKENPALVESEAAEPAE
                     EAFNPMSQLARRVQGVGVRGWLTMSSLFNKEDEDKLLPPEPCADHPLAAQPSSQAAAA
                     ETRGTGFWDAFASRWQQQQAAAASMLSGAEPTPDRDPEAGDEAAERPEPREADPAAGF
                     KWGFLTHKLAEMRMKAAPKGD"
ORIGIN      
        1 atgaaccaaa ccttctggaa aacctacaag tccaaagtgc tacagaccct gagtggggaa
       61 tctgaggagg acctggcaga ggagaaggag aacccagcgt tagtggagtc tgaggcagca
      121 gaaccagctg aagaggcctt caatcccatg tcacagctgg cccgccgggt tcagggggtt
      181 ggggtgagag gctggctgac aatgtcgtct ctgtttaaca aagaagacga ggacaagctg
      241 ctgccaccag agccctgtgc tgaccacccg ctggcggcgc agccctcctc tcaggcggcg
      301 gcggcggaga cgcgcgggac cgggttctgg gacgcgttcg ccagcagatg gcagcagcag
      361 caggcggcgg cagcgtccat gcttagcggc gcggaaccca ctccggatcg ggaccctgaa
      421 gccggggacg aggccgccga gcgccccgag ccgcgggaag ccgatcccgc agccggcttc
      481 aagtggggct ttctcaccca caaactggcc gagatgagga tgaaagctgc gcccaagggc
      541 gactagtctg ccggcctaac tgggcgac
//
LOCUS       XM_032606076             577 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X1, mRNA.
ACCESSION   XM_032606076
VERSION     XM_032606076.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..577
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             35..490
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X1"
                     /protein_id="XP_032461967.1"
                     /db_xref="GeneID:116740422"
                     /translation="MTQVKYFKMRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPE
                     TFWTTTGMFPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLV
                     HTEGQLQNEEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    113..433
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 cggtgaggtg accgggatgg tggaacactg acgcatgacg caggttaaat actttaagat
       61 gagaaacatt gatgtttgtt tgagctctga agggactgaa gtgattttag ctacatcaag
      121 tgatgaaaaa cacccacctg aaaatataat tgatggaaat ccagaaacat tttggaccac
      181 cacaggaatg tttccccaag agttcattat ttgttttcac aaacatgtaa ggattgaaag
      241 gcttttaatc cagagttact ttgtacggac cttgaggatt gaaaagagca cttctaaaga
      301 gccagttgat tttgagcagt ggattgaaag agatctggta catacagagg ggcagcttca
      361 aaatgaagaa attatggtac gtgatggcca cgccacttac ttgagattca ttattgtatc
      421 agcctttgat cattttgcat ctgtgcatag tgtttctgca gagggaatag cagtctcaaa
      481 tctttcttaa taattataac aaaatactct tgcactattt tttaacaata tatttattta
      541 aacatgaagt tgttattatt aaaggtattt gtatcaa
//
LOCUS       XM_032606082             731 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X2, mRNA.
ACCESSION   XM_032606082
VERSION     XM_032606082.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..731
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             211..642
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032461973.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    265..585
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 ctgcggaaag ggaagggggc ggggcggtag ggagacctcg aggcccgaca atcagcgcgc
       61 ttagagctaa ccggaggccc aggcgagcag ggtggttcgg cgggctcggc tggcaccggg
      121 ggagatacag ctttccccat cactttgcat ctatattttg gtttgtgcct tatcaccagt
      181 agatcaagga gaagggttaa atactttaag atgagaaaca ttgatgtttg tttgagctct
      241 gaagggactg aagtgatttt agctacatca agtgatgaaa aacacccacc tgaaaatata
      301 attgatggaa atccagaaac attttggacc accacaggaa tgtttcccca agagttcatt
      361 atttgttttc acaaacatgt aaggattgaa aggcttttaa tccagagtta ctttgtacgg
      421 accttgagga ttgaaaagag cacttctaaa gagccagttg attttgagca gtggattgaa
      481 agagatctgg tacatacaga ggggcagctt caaaatgaag aaattatggt acgtgatggc
      541 cacgccactt acttgagatt cattattgta tcagcctttg atcattttgc atctgtgcat
      601 agtgtttctg cagagggaat agcagtctca aatctttctt aataattata acaaaatact
      661 cttgcactat tttttaacaa tatatttatt taaacatgaa gttgttatta ttaaaggtat
      721 ttgtatcaat c
//
LOCUS       XM_032606085             949 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X3, mRNA.
ACCESSION   XM_032606085
VERSION     XM_032606085.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..949
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..949
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             429..860
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032461976.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    483..803
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 cctgcatgca gcaatgaaga cccaacacag ccaaaactaa ataaataaat ttattaaaaa
       61 aaaaaaaacc cttattgcga taccatttca caccaatgag attggctaaa gctaaaatgt
      121 ctaacaatac caagttggtg agagtatgag ggagcagaaa gtttcataca ctgctaatgg
      181 taatttaaat tgttataatt taggggggac cttgaagatg gcggaagagt aagacgtgga
      241 gatcgccttc ctccccatgg atactccaga aatacatcca cacgtggaac aactcctaca
      301 gaactactga aggctggcag aagacctcag acctcccaaa agatacagct ttccccatca
      361 ctttgcatct atattttggt ttgtgcctta tcaccagtag atcaaggaga agggttaaat
      421 actttaagat gagaaacatt gatgtttgtt tgagctctga agggactgaa gtgattttag
      481 ctacatcaag tgatgaaaaa cacccacctg aaaatataat tgatggaaat ccagaaacat
      541 tttggaccac cacaggaatg tttccccaag agttcattat ttgttttcac aaacatgtaa
      601 ggattgaaag gcttttaatc cagagttact ttgtacggac cttgaggatt gaaaagagca
      661 cttctaaaga gccagttgat tttgagcagt ggattgaaag agatctggta catacagagg
      721 ggcagcttca aaatgaagaa attatggtac gtgatggcca cgccacttac ttgagattca
      781 ttattgtatc agcctttgat cattttgcat ctgtgcatag tgtttctgca gagggaatag
      841 cagtctcaaa tctttcttaa taattataac aaaatactct tgcactattt tttaacaata
      901 tatttattta aacatgaagt tgttattatt aaaggtattt gtatcaatc
//
LOCUS       XM_032606092             666 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X4, mRNA.
ACCESSION   XM_032606092
VERSION     XM_032606092.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..666
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             146..577
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032461983.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    200..520
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 atgaaattga gctatttgta atgagatgga tagacctaga gtctgtcata cagagtgaaa
       61 tacagctttc cccatcactt tgcatctata ttttggtttg tgccttatca ccagtagatc
      121 aaggagaagg gttaaatact ttaagatgag aaacattgat gtttgtttga gctctgaagg
      181 gactgaagtg attttagcta catcaagtga tgaaaaacac ccacctgaaa atataattga
      241 tggaaatcca gaaacatttt ggaccaccac aggaatgttt ccccaagagt tcattatttg
      301 ttttcacaaa catgtaagga ttgaaaggct tttaatccag agttactttg tacggacctt
      361 gaggattgaa aagagcactt ctaaagagcc agttgatttt gagcagtgga ttgaaagaga
      421 tctggtacat acagaggggc agcttcaaaa tgaagaaatt atggtacgtg atggccacgc
      481 cacttacttg agattcatta ttgtatcagc ctttgatcat tttgcatctg tgcatagtgt
      541 ttctgcagag ggaatagcag tctcaaatct ttcttaataa ttataacaaa atactcttgc
      601 actatttttt aacaatatat ttatttaaac atgaagttgt tattattaaa ggtatttgta
      661 tcaatc
//
LOCUS       XM_032606099             729 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X5, mRNA.
ACCESSION   XM_032606099
VERSION     XM_032606099.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..729
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             209..640
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032461990.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    263..583
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 ttagaggagg ataaggcatc agggaagtcc agggtcaggg agttttaaaa atgcagagga
       61 tggcacccca gagtgcacca cctttgatga actgaggccc tgagtgaaca cgtgtgagtt
      121 agatacagct ttccccatca ctttgcatct atattttggt ttgtgcctta tcaccagtag
      181 atcaaggaga agggttaaat actttaagat gagaaacatt gatgtttgtt tgagctctga
      241 agggactgaa gtgattttag ctacatcaag tgatgaaaaa cacccacctg aaaatataat
      301 tgatggaaat ccagaaacat tttggaccac cacaggaatg tttccccaag agttcattat
      361 ttgttttcac aaacatgtaa ggattgaaag gcttttaatc cagagttact ttgtacggac
      421 cttgaggatt gaaaagagca cttctaaaga gccagttgat tttgagcagt ggattgaaag
      481 agatctggta catacagagg ggcagcttca aaatgaagaa attatggtac gtgatggcca
      541 cgccacttac ttgagattca ttattgtatc agcctttgat cattttgcat ctgtgcatag
      601 tgtttctgca gagggaatag cagtctcaaa tctttcttaa taattataac aaaatactct
      661 tgcactattt tttaacaata tatttattta aacatgaagt tgttattatt aaaggtattt
      721 gtatcaatc
//
LOCUS       XM_032606107             725 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X6, mRNA.
ACCESSION   XM_032606107
VERSION     XM_032606107.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..725
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 4
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116740422"
     CDS             205..636
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032461998.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    259..579
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 gagtaggatt tgagcgcccg cgaactccgc ggaggcctgc ggaaagggaa gggggcgggg
       61 cggtagggag acctcgaggc ccgacaatca gcgcgcttag agctaaccgg aggcccagat
      121 acagctttcc ccatcacttt gcatctatat tttggtttgt gccttatcac cagtagatca
      181 aggagaaggg ttaaatactt taagatgaga aacattgatg tttgtttgag ctctgaaggg
      241 actgaagtga ttttagctac atcaagtgat gaaaaacacc cacctgaaaa tataattgat
      301 ggaaatccag aaacattttg gaccaccaca ggaatgtttc cccaagagtt cattatttgt
      361 tttcacaaac atgtaaggat tgaaaggctt ttaatccaga gttactttgt acggaccttg
      421 aggattgaaa agagcacttc taaagagcca gttgattttg agcagtggat tgaaagagat
      481 ctggtacata cagaggggca gcttcaaaat gaagaaatta tggtacgtga tggccacgcc
      541 acttacttga gattcattat tgtatcagcc tttgatcatt ttgcatctgt gcatagtgtt
      601 tctgcagagg gaatagcagt ctcaaatctt tcttaataat tataacaaaa tactcttgca
      661 ctatttttta acaatatatt tatttaaaca tgaagttgtt attattaaag gtatttgtat
      721 caatc
//
LOCUS       XM_032606114             626 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X7, mRNA.
ACCESSION   XM_032606114
VERSION     XM_032606114.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..626
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             106..537
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462005.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    160..480
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 ctgggcgagg ccgacggaga tacagctttc cccatcactt tgcatctata ttttggtttg
       61 tgccttatca ccagtagatc aaggagaagg gttaaatact ttaagatgag aaacattgat
      121 gtttgtttga gctctgaagg gactgaagtg attttagcta catcaagtga tgaaaaacac
      181 ccacctgaaa atataattga tggaaatcca gaaacatttt ggaccaccac aggaatgttt
      241 ccccaagagt tcattatttg ttttcacaaa catgtaagga ttgaaaggct tttaatccag
      301 agttactttg tacggacctt gaggattgaa aagagcactt ctaaagagcc agttgatttt
      361 gagcagtgga ttgaaagaga tctggtacat acagaggggc agcttcaaaa tgaagaaatt
      421 atggtacgtg atggccacgc cacttacttg agattcatta ttgtatcagc ctttgatcat
      481 tttgcatctg tgcatagtgt ttctgcagag ggaatagcag tctcaaatct ttcttaataa
      541 ttataacaaa atactcttgc actatttttt aacaatatat ttatttaaac atgaagttgt
      601 tattattaaa ggtatttgta tcaatc
//
LOCUS       XM_032606119            1154 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X8, mRNA.
ACCESSION   XM_032606119
VERSION     XM_032606119.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1154
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1154
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             634..1065
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462010.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    688..1008
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 ccctgagtcc tagagacact agtgccagcc cacgaacttt ctggaagcca gaaataatgt
       61 tttgaccccc aaaagggaaa atcagttcca aatagaaatt aataaatgta tccaaatgta
      121 atctattaac tggaacgtaa cccatatact taagaattat atttgatata ggatgtgggt
      181 tcatatattt tatgtaattt gggccgggcg tccaaaagta tgtgtttagg gcccttggag
      241 ctattgaaat ggtcttgaac tgagtagaag ggtgtgggac ggaggtgaaa gggtagtgtc
      301 agggctggtt gcctttcaag tgataccaag ctataggccc tggccctggg gaggcagagg
      361 atggccgttt tctaatttac acaaaagttt ccagtggatg atgttatggg aaagggtttg
      421 aggagtctgg ttctaagagt accagacgca aggggtactc tttcctgacc acaagaagaa
      481 agtgaaggct tggcgcagaa agctttttgg aaagaaaggt gacgtgaact ggaggtgaaa
      541 gggttggata cagctttccc catcactttg catctatatt ttggtttgtg ccttatcacc
      601 agtagatcaa ggagaagggt taaatacttt aagatgagaa acattgatgt ttgtttgagc
      661 tctgaaggga ctgaagtgat tttagctaca tcaagtgatg aaaaacaccc acctgaaaat
      721 ataattgatg gaaatccaga aacattttgg accaccacag gaatgtttcc ccaagagttc
      781 attatttgtt ttcacaaaca tgtaaggatt gaaaggcttt taatccagag ttactttgta
      841 cggaccttga ggattgaaaa gagcacttct aaagagccag ttgattttga gcagtggatt
      901 gaaagagatc tggtacatac agaggggcag cttcaaaatg aagaaattat ggtacgtgat
      961 ggccacgcca cttacttgag attcattatt gtatcagcct ttgatcattt tgcatctgtg
     1021 catagtgttt ctgcagaggg aatagcagtc tcaaatcttt cttaataatt ataacaaaat
     1081 actcttgcac tattttttaa caatatattt atttaaacat gaagttgtta ttattaaagg
     1141 tatttgtatc aatc
//
LOCUS       XM_032606124             620 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X9, mRNA.
ACCESSION   XM_032606124
VERSION     XM_032606124.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..620
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             102..533
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462015.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    156..476
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 aggcctgcgg aaagggaagg gggcggggcg gtagggagac ctcgaggccc gacaatcagc
       61 gcgcttagag ctaaccggag gcccaggtta aatactttaa gatgagaaac attgatgttt
      121 gtttgagctc tgaagggact gaagtgattt tagctacatc aagtgatgaa aaacacccac
      181 ctgaaaatat aattgatgga aatccagaaa cattttggac caccacagga atgtttcccc
      241 aagagttcat tatttgtttt cacaaacatg taaggattga aaggctttta atccagagtt
      301 actttgtacg gaccttgagg attgaaaaga gcacttctaa agagccagtt gattttgagc
      361 agtggattga aagagatctg gtacatacag aggggcagct tcaaaatgaa gaaattatgg
      421 tacgtgatgg ccacgccact tacttgagat tcattattgt atcagccttt gatcattttg
      481 catctgtgca tagtgtttct gcagagggaa tagcagtctc aaatctttct taataattat
      541 aacaaaatac tcttgcacta ttttttaaca atatatttat ttaaacatga agttgttatt
      601 attaaaggta tttgtatcaa
//
LOCUS       XM_032606127             668 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X10, mRNA.
ACCESSION   XM_032606127
VERSION     XM_032606127.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..668
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             150..581
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462018.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    204..524
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 gtggcactgg gtttagagga ggataaggca tcagggaagt ccagggtcag ggagttttaa
       61 aaatgcagag gatggcaccc cagagtgcac cacctttgat gaactgaggc cctgagtgaa
      121 cacgtgtgag ttaggttaaa tactttaaga tgagaaacat tgatgtttgt ttgagctctg
      181 aagggactga agtgatttta gctacatcaa gtgatgaaaa acacccacct gaaaatataa
      241 ttgatggaaa tccagaaaca ttttggacca ccacaggaat gtttccccaa gagttcatta
      301 tttgttttca caaacatgta aggattgaaa ggcttttaat ccagagttac tttgtacgga
      361 ccttgaggat tgaaaagagc acttctaaag agccagttga ttttgagcag tggattgaaa
      421 gagatctggt acatacagag gggcagcttc aaaatgaaga aattatggta cgtgatggcc
      481 acgccactta cttgagattc attattgtat cagcctttga tcattttgca tctgtgcata
      541 gtgtttctgc agagggaata gcagtctcaa atctttctta ataattataa caaaatactc
      601 ttgcactatt ttttaacaat atatttattt aaacatgaag ttgttattat taaaggtatt
      661 tgtatcaa
//
LOCUS       XM_032606133            1082 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X11, mRNA.
ACCESSION   XM_032606133
VERSION     XM_032606133.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1082
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             564..995
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462024.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    618..938
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 cccctgagtc ctagagacac tagtgccagc ccacgaactt tctggaagcc agaaataatg
       61 ttttgacccc caaaagggaa aatcagttcc aaatagaaat taataaatgt atccaaatgt
      121 aatctattaa ctggaacgta acccatatac ttaagaatta tatttgatat aggatgtggg
      181 ttcatatatt ttatgtaatt tgggccgggc gtccaaaagt atgtgtttag ggcccttgga
      241 gctattgaaa tggtcttgaa ctgagtagaa gggtgtggga cggaggtgaa agggtagtgt
      301 cagggctggt tgcctttcaa gtgataccaa gctataggcc ctggccctgg ggaggcagag
      361 gatggccgtt ttctaattta cacaaaagtt tccagtggat gatgttatgg gaaagggttt
      421 gaggagtctg gttctaagag taccagacgc aaggggtact ctttcctgac cacaagaaga
      481 aagtgaaggc ttggcgcaga aagctttttg gaaagaaagg tgacgtgaac tggaggtgaa
      541 agggttgggt taaatacttt aagatgagaa acattgatgt ttgtttgagc tctgaaggga
      601 ctgaagtgat tttagctaca tcaagtgatg aaaaacaccc acctgaaaat ataattgatg
      661 gaaatccaga aacattttgg accaccacag gaatgtttcc ccaagagttc attatttgtt
      721 ttcacaaaca tgtaaggatt gaaaggcttt taatccagag ttactttgta cggaccttga
      781 ggattgaaaa gagcacttct aaagagccag ttgattttga gcagtggatt gaaagagatc
      841 tggtacatac agaggggcag cttcaaaatg aagaaattat ggtacgtgat ggccacgcca
      901 cttacttgag attcattatt gtatcagcct ttgatcattt tgcatctgtg catagtgttt
      961 ctgcagaggg aatagcagtc tcaaatcttt cttaataatt ataacaaaat actcttgcac
     1021 tattttttaa caatatattt atttaaacat gaagttgtta ttattaaagg tatttgtatc
     1081 aa
//
LOCUS       XM_032606141             661 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X12, mRNA.
ACCESSION   XM_032606141
VERSION     XM_032606141.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..661
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             143..574
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462032.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    197..517
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 ggcctgcgga aagggaaggg ggcggggcgg tagggagacc tcgaggcccg acaatcagcg
       61 cgcttagagc taaccggagg cccaggcgag cagggtggtt cggcgggctc ggctggcacc
      121 gggggaggtt aaatacttta agatgagaaa cattgatgtt tgtttgagct ctgaagggac
      181 tgaagtgatt ttagctacat caagtgatga aaaacaccca cctgaaaata taattgatgg
      241 aaatccagaa acattttgga ccaccacagg aatgtttccc caagagttca ttatttgttt
      301 tcacaaacat gtaaggattg aaaggctttt aatccagagt tactttgtac ggaccttgag
      361 gattgaaaag agcacttcta aagagccagt tgattttgag cagtggattg aaagagatct
      421 ggtacataca gaggggcagc ttcaaaatga agaaattatg gtacgtgatg gccacgccac
      481 ttacttgaga ttcattattg tatcagcctt tgatcatttt gcatctgtgc atagtgtttc
      541 tgcagaggga atagcagtct caaatctttc ttaataatta taacaaaata ctcttgcact
      601 attttttaac aatatattta tttaaacatg aagttgttat tattaaaggt atttgtatca
      661 a
//
LOCUS       XM_032606148             555 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X13, mRNA.
ACCESSION   XM_032606148
VERSION     XM_032606148.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..555
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             37..468
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462039.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    91..411
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 tagggctctg agcagtgaga ggttaaatac tttaagatga gaaacattga tgtttgtttg
       61 agctctgaag ggactgaagt gattttagct acatcaagtg atgaaaaaca cccacctgaa
      121 aatataattg atggaaatcc agaaacattt tggaccacca caggaatgtt tccccaagag
      181 ttcattattt gttttcacaa acatgtaagg attgaaaggc ttttaatcca gagttacttt
      241 gtacggacct tgaggattga aaagagcact tctaaagagc cagttgattt tgagcagtgg
      301 attgaaagag atctggtaca tacagagggg cagcttcaaa atgaagaaat tatggtacgt
      361 gatggccacg ccacttactt gagattcatt attgtatcag cctttgatca ttttgcatct
      421 gtgcatagtg tttctgcaga gggaatagca gtctcaaatc tttcttaata attataacaa
      481 aatactcttg cactattttt taacaatata tttatttaaa catgaagttg ttattattaa
      541 aggtatttgt atcaa
//
LOCUS       XM_032606154             542 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X14, mRNA.
ACCESSION   XM_032606154
VERSION     XM_032606154.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..542
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             24..455
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462045.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    78..398
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 gtacctgggt taaatacttt aagatgagaa acattgatgt ttgtttgagc tctgaaggga
       61 ctgaagtgat tttagctaca tcaagtgatg aaaaacaccc acctgaaaat ataattgatg
      121 gaaatccaga aacattttgg accaccacag gaatgtttcc ccaagagttc attatttgtt
      181 ttcacaaaca tgtaaggatt gaaaggcttt taatccagag ttactttgta cggaccttga
      241 ggattgaaaa gagcacttct aaagagccag ttgattttga gcagtggatt gaaagagatc
      301 tggtacatac agaggggcag cttcaaaatg aagaaattat ggtacgtgat ggccacgcca
      361 cttacttgag attcattatt gtatcagcct ttgatcattt tgcatctgtg catagtgttt
      421 ctgcagaggg aatagcagtc tcaaatcttt cttaataatt ataacaaaat actcttgcac
      481 tattttttaa caatatattt atttaaacat gaagttgtta ttattaaagg tatttgtatc
      541 aa
//
LOCUS       XM_032606163             556 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 11 (HSPB11), transcript variant X15, mRNA.
ACCESSION   XM_032606163
VERSION     XM_032606163.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..556
                     /gene="HSPB11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740422"
     CDS             38..469
                     /gene="HSPB11"
                     /codon_start=1
                     /product="intraflagellar transport protein 25 homolog
                     isoform X2"
                     /protein_id="XP_032462054.1"
                     /db_xref="GeneID:116740422"
                     /translation="MRNIDVCLSSEGTEVILATSSDEKHPPENIIDGNPETFWTTTGM
                     FPQEFIICFHKHVRIERLLIQSYFVRTLRIEKSTSKEPVDFEQWIERDLVHTEGQLQN
                     EEIMVRDGHATYLRFIIVSAFDHFASVHSVSAEGIAVSNLS"
     misc_feature    92..412
                     /gene="HSPB11"
                     /note="F5/8 type C domain; Region: F5_F8_type_C;
                     pfam00754"
                     /db_xref="CDD:459925"
ORIGIN      
        1 tggctgggcg aggccgacgg aggttaaata ctttaagatg agaaacattg atgtttgttt
       61 gagctctgaa gggactgaag tgattttagc tacatcaagt gatgaaaaac acccacctga
      121 aaatataatt gatggaaatc cagaaacatt ttggaccacc acaggaatgt ttccccaaga
      181 gttcattatt tgttttcaca aacatgtaag gattgaaagg cttttaatcc agagttactt
      241 tgtacggacc ttgaggattg aaaagagcac ttctaaagag ccagttgatt ttgagcagtg
      301 gattgaaaga gatctggtac atacagaggg gcagcttcaa aatgaagaaa ttatggtacg
      361 tgatggccac gccacttact tgagattcat tattgtatca gcctttgatc attttgcatc
      421 tgtgcatagt gtttctgcag agggaatagc agtctcaaat ctttcttaat aattataaca
      481 aaatactctt gcactatttt ttaacaatat atttatttaa acatgaagtt gttattatta
      541 aaggtatttg tatcaa
//
LOCUS       XM_032606174           18138 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hemicentin 1 (HMCN1), mRNA.
ACCESSION   XM_032606174
VERSION     XM_032606174.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18138
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..18138
                     /gene="HMCN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 84%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740524"
     CDS             1..16908
                     /gene="HMCN1"
                     /codon_start=1
                     /product="hemicentin-1"
                     /protein_id="XP_032462065.1"
                     /db_xref="GeneID:116740524"
                     /translation="MISWDIVRTVFLFTLLYTSQAQEARPQSEIRAEEIPEGASTLAF
                     VFDVTGSMYDDLVQVIEGASKILETSLKRPKRPLFNFALVPFHDPEIGPVTVTTDPKK
                     FQYELRELYVQGGGDCPEMSIGAIKTALEISLPGSFIYVFTDARSKDYRLTHEVLQLI
                     QQKQSQVVFVLTGDCDDRGHIGYRVYEEIASTSSGQVFHLDKKQVNEVLKWVEEAVQA
                     SKVHLLSTDHLEQAVNTWKIPFDPSLKEVTVSLSGPSPVIEIRNPLGKLIKKGFGLNE
                     LLNIHNSAKVVNVKEPEAGIWTVKTSSSGRHSVRITGLSTIDFRAGFSRKPTLDFKNT
                     VSRPVQGMPTYVLLNTSGISIPARVDRLELLSISGSSLKTIPIKYYPDRKPYGIWNIS
                     DFTPPNEAFFLKVTGYDKDDYLFQRVSGVSFSSIVPDAPKVTMPEKTPGYYLQPGQIH
                     CSVESLLPFTLSFARNGVTLGVDQYLKESASVTWDIEQVTLSDEGSYECIAVSSAGTG
                     RAETFFDVSEPPPVIQVPNNVTVAPGERTLLTCLVISAVDYNLTWRRNDRDVRLADPA
                     GMRILANLSLELRSVKFSDAGEYHCVVSSEGGLSAASVFLTVQEPPKVTVMPKNQSFT
                     GGSEVSIMCSATGYPKPKITWTMNDMFIVGSHRYRMTSEGILFIKNAVPKDAGIYGCL
                     ASNSAGMDKQTSTLRYTEAPKLIVIQSELLVALGDTTVMECKTSGVPPPQVKWFKGDL
                     ELRPSPFLIIDPLLGLLKIQETQDLDAGDYTCVAVNDAGRATGKITLDVGSPPVFIQE
                     PADVSMEIGSNVTLPCYVQGYPEPKIKWRRLDNMPIYSRPFSVSSISQLRTGALFISN
                     LWASDKGTYICEAENQFGKIQSQATVTVTGLVAPLIGISPSVTSVIEGQQLTLPCVLL
                     AGNPIPERRWIKNSAMLVQNPYITVRSDGSLHVERARLQDGGEYTCVASNVAGTISKT
                     TTVDVHVLPTIQHGQQVLSTIEGIPVTLPCKASGIPKPSIIWSKKGERISTSSAKFSA
                     GADGSLYVVSPGGEESGEYVCTATNAAGYAKRKVQLTVYVRPRVFGDQRGLSQDKPIE
                     ISVLAGGEVTLPCEVKSLPPPIITWAKETQLISPFSPRHTFLPSGSMKITETRVSDSG
                     MYLCVATNIAGNVTQSVKLNVHVPPKIQRGPTIMKVQVGQRVDIPCSAQGTPLPVITW
                     FTGGSAILVDGLQHISHPDGTFSIDQAVLSDAGIYTCVATNIAGSDETEITLHVQEPP
                     TLEDLEPPYNTPFQERVASQRIAFPCPAKGTPKPTIKWLWNGRELTARDPGISILEDG
                     TLLVIASVTPYDNGEYICVAVNEAGTTERKYNLKVHVPPVVKDKEQVTNVSVLVNQLT
                     SLICEVEGTPSPIIMWYKDDVQVTESSTIQIVSNGKILKLFKATPEDAGRYSCKAINT
                     AGTSQKYFNIDVLVPPTIIGTSSPSEVSVVLNQDTTLECQVKGTPFPIIHWFKDGKPL
                     FLGDSNIELLDKGQILHLKNARRSDKGRYQCTVSNAAGKQAKDIKLTIYIPPSIKGGN
                     VTTEISALINSIIKLECETRGLPMPVITWYKDGQPIISSSQALYIDKGQFLHIPRAQV
                     SDSATYKCQVTNVAGTAEKSFHVDVYVPPMIEGDLAAPLSKQVVIAHSLTLECKAAGN
                     PPPVLTWLKDGVPVKASNNIRIEAGGKKLEIMGALEVDRGQYICVATSVAGEKEIKYE
                     VDVLVPPAIEGGDEMSYFIVMVNNLLELDCQVTGSPPPTIMWLKDGQLIDERDGFKIL
                     LNGHKLVIAQAQVSDTGLYRCVATNTAGDHKKEFEVTVHVPPAIKSSGLSERAVVRYK
                     PITLQCIANGIPKPSITWLKDGQPVNTAQGNLKIQSSGRVLQIAKALMEDAGRYTCVA
                     TNAAGETQQHIQLHVHEPPSLEDAGKMLNETVVVNNPIQLECKATGNPSPAITWYKDN
                     RPLLGSSSMTFLNRGQIINIESTQITDAGIYKCVAINSAGATELFYSLQVHVPPSISG
                     SNNMVAVVVNNLVRLECEARGIPAPSLTWLKDGSPVASFTNGIQVLSGGRILALTSAQ
                     ISDTGRYTCVAVNAAGEKQRDIDLRVYVAPNIMGEEQNVSILISQAVELLCQSDAIPP
                     PTLTWLKDGHPLLKKPGLSVTENGSVLKIEDAQVQDSGRYTCEATNVAGKTEKNYNVN
                     IWVPPNIYGSDELAQLTVIEGHLISLLCESSGIPPPNLIWKKKGSPVLADSAGRVRTL
                     SGGRQLQISVAEESDAGLYTCVASNVAGTAKKDYNLQVYIRPTIANSGSHPTEIIVTR
                     GKSISLECEVEGIPQPTVTWMKDGRPLTKGRGMEVTDEGHILQLKNVHVSDTGRYVCV
                     AVNIAGMTDRKYDLSVHTPPSIIGNHRTPENISVVEKNSVSLTCEASGIPLPSITWLK
                     DGCPVNFSSSLRILSGGRTLRLMQTRMEDAGQYTCVVRNAAGEERKTFGLSVLVPPHI
                     VGENTFEDVKVKEKQSVALTCEVTGNPVPEITWQKDGQFLKEDDTHHLMSGGRFLQIT
                     NAQVSHTGRYTCLASNTAGDKSRSFSLNVLVSPTIAGVDSDGIPEDVTVILNSPTSLV
                     CEAYSYPPATITWFKNGTPLESNRNIRILPGGRTLQILNAQEDSAGRYSCVATNEAGE
                     MIKYYEVKVYIPPIISKRDLLGPGVSPKEVKIKVNNTLTLECEAYAIPSASLSWYKDG
                     QPLKADDHVTIAASGHTLQIREAQISDTGRYTCIASNIAGEDELDFDVNIQVPPSFHK
                     LWEIGNMLDTGRSGEAKDVIINNPISLYCETNAAPPPTLTWYKDGHPLTSSDRVLILP
                     GGRVLQIPRAKVEDAGRYMCVAVNEAGEDSLQYDVRVLLPPVIQGADSDLPEEVTVLV
                     NKSMLVECLSSGSPTPRNSWQRDGQFLLEDEHHKFLSNGRILQILNTQITDIGRYVCI
                     AENTAGSAKKYFNLNVHVPPSVIGPNPENLTVVVNNFISLTCEVSGFPPPDLSWLKNE
                     QPIKLNTNALIVPGGRTLQIIRAKVSDGGEYTCIAINQAGESKKKVSLTVYVPPSIKD
                     HGSESLSVVNVREGTSVSLECESNAVPPPVITWYKNGRMLTESTQLEILADGQMLHIT
                     KAEVSDTGQYVCRAINVAGRDDKNFHLNVYVPPSIEGPEKEVIVEAISNPVTLTCDAT
                     GIPPPMIAWLKNHKPIENSDSLEVHILSGGSKLQIARSQHSDSGNYTCIASNMEGKAQ
                     KNYILSIQVPPNVAGAEIPSEVSVLLGENVELVCNANGIPTPLIQWLRDGKPITNSET
                     ERIRVTADGSTLNIYEALPSDMGKYTCVATNPAGEEDRIFNLNVYVPPAIRGNKEAAE
                     KLMALVDTSINIECRATGMPPPQINWLKNGLPLPLSSHVRLLSGGQVVRIVRAQVSDD
                     AVYTCVASNRAGVDNKHYSLQVFVPPKLDNGMGTEEITIVKGSSTSMPCFTDGTPTPR
                     MSWLRDGQPLGLDAHLLISSQEMVLQLIKAETEDSGRYTCIASNEAGEISKHFILKVL
                     EPPHINGSEEPVEMSVIVNNPLELTCIASGIPAPKITWMKDGRPLPQVDQMQTLGGGE
                     VLRISNAQVEDTGRYTCLASSPAGDDDKEYLVRVHVPPNIAGTDEPQDFTVLRNRQVT
                     LECKSDAVPPPVITWLKNGERLQATPRVRILSGGRYLQINNADLGDTANYTCVASNIA
                     GKTTREFILTVNVPPSIKSGPQSLVIHLNKSTVLECFAEGVPAPRITWRKDGAVLSEN
                     HARYSILENGFLHIQSAHVTDSGRYLCMATNAAGTDRRRIDLQVHVPPSIALGPTNIT
                     VTVNVQTTLACEATGIPKPSINWRKNGHLLNVDQNQNSYRLLSSGSLVIISPSVDDTA
                     TYECTVTSDAGEDKRTVDLTVQVPPSIADEPTDFLVTTHAPTVITCTASGVPFPSIHW
                     AKNGIRLLPRGEGYKILSSGAIEIFATQLSHAGRYTCVARNAAGSAHRHVSLYVQEPP
                     VIQPQPSELAVILNNPILLPCEATGTPSPFITWQKEGINVITSGRSHAVLPRGGLQIS
                     RAVREDAGTYMCVAQNPAGTALGKIKLNVQVPPVISPHPKEYIIAVDKPIMLPCEADG
                     LPPPDITWHKDGHVIMESIRQHVLSSGALQIAFAQPGDAGQYTCTAANVAGSSSTSTK
                     LTVHVPPRIQSTEVHYTVNENSQAVLPCVADGIPTPAINWKKDNVLLANLLGKHTVEP
                     YGELILENVVPEDSGTYTCVANNAAGEDTHTVSLTVHVLPTFTELPGDVSLNKGEQLR
                     LNCKATGIPLPKLTWTFNNNIIPAHFDSVNGHSELVIERMSKEDSGTYVCTAENSVGF
                     VKAIGFVYVKEPPVFKGDYPSNWIEPLGGNAILNCEVKGDPAPTIQWSRRGMDIEISH
                     RIRQLGNGSLAIYGTTNEDAGDYTCVATNEAGVVERSMSLTLQSPPVITLEPTETIIN
                     AGGKVVLNCQATGEPHPTITWSRQGHSIPWDERINVLSNNSLYITAAQKEDTSEYECV
                     ARNLMGSVLVRVPVIVQVHGGFSQWSTWRSCSVTCGKGIQKRSRVCNNPSPANGGKPC
                     QGSDSEMRNCQHKLCPVDGNWSEWSPWEECTRSCGHGNRTRTRTCNNPSAQHGGQPCE
                     GNAVEIIMCNIRPCPVHGAWSTWQPWGTCSVSCGKGTQTRIRLCNNPPPSFDGSYCDG
                     AETQMQVCHERHCPVDGKWATWTSWSTCTVSCGGGARQRTRDCSDPVPQYGGNKCEGS
                     DVQSDFCNSDSCPTHGNWSPWSGWGMCSRTCNGGQMRRYRTCDNPRPSNGGRACGGPD
                     SQIQRCNTDICPVDGSWGNWHSWSWCSTSCGGGEKTRKRQCNNPVPSKSGRPCLGDAT
                     QVSRCNIQACPGGPQRARGSVIGSINDVEFGIAFLNATVTDSPNSDTKIIHARITNVP
                     RSLGPAMRKIISILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILRMTHI
                     ARGLDSDGALLVDIVVSGYVLQLQSPAEVTVKDYTEDYIQTGPGQLYAYSTRLFTVDG
                     ISVPYTWNHTVFYDEAQGRMPFLVETLHASSVESDYNQLEETLGFKIHASISKGDRSN
                     QCPSGFALDSVGPFCADEDECAAGNPCSHICHNAMGTYYCSCPKGLTIAVDGRTCQDI
                     DECALSGHTCHAGQDCDNTIGSYHCVVRCGTGFRRTSDGLSCQDINECQESSPCHHHC
                     FNAIGSFHCGCEPGYQLKGRKCVDVNECRQNVCRPDQHCKNTRGGYKCIDLCPNGMTK
                     AENGTCIDIDECRDGTHQCRYNQICENTRGSYRCVCPRGYRSQGIGRPCMDINECEQV
                     PKPCAYQCSNTPGSFKCICPPGQHLLGDGKSCAGLERLPNYGTQYNSYNLARFSPMRN
                     NYQPQQHYRQYSHLYSSYSEYRNSRTSLSRTRRTIRKTCPEGSEASHDTCIDIDECEN
                     RDTCQHECKNTFGSYQCICPPGYQLMLNGKTCQDVDECLEQNVHCGPNRMCFNMRGSY
                     QCIQTPCPPDYQRDPVSGFCLKNCPPNDLECALSPYALEYKLVSLPFGIDANQDLIRL
                     VAYTQDGVMHPRTTFLMIDEEQTVPFALRDENLKGVVYTTRPLREPETYRMRVQALSY
                     SANGTIDYQTTFIVYIAVSAYPY"
     misc_feature    <70..630
                     /gene="HMCN1"
                     /note="vWFA (von Willebrand factor type A) domain of Mg
                     and Co chelatases [Coenzyme transport and metabolism];
                     Region: ChlD; COG1240"
                     /db_xref="CDD:440853"
     misc_feature    1342..1539
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cd00096"
                     /db_xref="CDD:409353"
     misc_feature    1342..1353
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1378..1392
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1444..1458
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1486..1503
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1528..1539
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1576..1824
                     /gene="HMCN1"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    1609..1623
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1648..1662
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1720..1734
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1762..1779
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1801..1812
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1831..2055
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    2104..2367
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    2158..2169
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    2194..2208
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    2263..2277
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2305..2322
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2347..2358
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    2374..2652
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    2428..2442
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    2467..2481
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    2548..2562
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2590..2607
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2629..2640
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    2686..2931
                     /gene="HMCN1"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    2719..2733
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    2761..2775
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    2827..2841
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2869..2886
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2908..2919
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    2947..3204
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    2992..3006
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    3031..3045
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    3100..3114
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    3142..3159
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    3181..3192
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    3256..3501
                     /gene="HMCN1"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    3289..3303
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    3328..3342
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    3397..3411
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    3439..3456
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    3478..3489
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    3511..3774
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    3562..3576
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    3601..3615
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    3670..3684
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    3712..3729
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    3754..3765
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    3784..4065
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    3850..3864
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    3889..3903
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    3958..3972
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    4003..4020
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    4042..4053
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    4105..4326
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    4135..4146
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    4171..4185
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    4240..4254
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    4282..4299
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    4351..4587
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    4693..4905
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    4732..4746
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    4801..4815
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    4843..4860
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    4942..5187
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    4975..4989
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    5014..5028
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    5083..5097
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    5125..5142
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    5236..5466
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    5254..5268
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    5293..5307
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    5362..5376
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    5404..5421
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    5473..5745
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    5530..5544
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    5569..5583
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    5641..5655
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    5683..5700
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    5722..5733
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    5785..5985
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    6091..6276
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    6124..6138
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    6193..6210
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    6238..6255
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    6331..6573
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    6361..6375
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    6400..6414
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    6466..6483
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    6511..6528
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    6616..6858
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    6640..6654
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    6679..6693
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    6754..6768
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    6796..6813
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    6889..7101
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    7171..7422
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    7210..7224
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    7249..7263
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    7318..7332
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    7360..7377
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    7462..7701
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    7489..7503
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    7528..7542
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    7600..7611
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    7639..7656
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    7678..7689
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    7735..7962
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    7777..7791
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    7816..7830
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    7885..7899
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    7927..7944
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    7966..7977
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    8041..8286
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    8074..8088
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8113..8127
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8179..8196
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    8224..8241
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8365..8574
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    8383..8397
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8422..8436
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8491..8505
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    8533..8550
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8635..8856
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    8668..8682
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8707..8721
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8773..8790
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    8818..8835
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8890..9156
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    8944..8958
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8983..8997
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    9052..9066
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    9094..9111
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    9133..9144
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    9196..9441
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    9229..9243
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    9268..9282
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    9331..9351
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    9379..9396
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    9418..9429
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    9448..9684
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    9754..10008
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    9790..9804
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    9829..9843
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    9904..9918
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    9946..9963
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    9985..9996
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    10060..10290
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    10078..10092
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    10117..10131
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    10186..10200
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    10228..10245
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    10267..10278
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    10333..10569
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    10357..10371
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    10396..10410
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    10468..10479
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    10507..10524
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    10546..10557
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    10576..10806
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    10882..11127
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    10915..10929
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    10954..10968
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    11020..11037
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    11065..11082
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    11104..11115
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    11134..11361
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    11407..11637
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    11695..11952
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    11740..11754
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    11779..11793
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    11848..11862
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    11890..11907
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    11929..11940
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    11959..12186
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    12235..12495
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    12286..12300
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    12325..12339
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    12391..12405
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    12433..12450
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    12475..12486
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    12502..12729
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    12778..13035
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    12829..12843
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    12868..12882
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    12931..12945
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    12973..12990
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    13090..13305
                     /gene="HMCN1"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    13099..13113
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    13138..13152
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    13204..13218
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    13246..13263
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    13285..13296
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    13321..13578
                     /gene="HMCN1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    13369..13383
                     /gene="HMCN1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    13408..13422
                     /gene="HMCN1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    13474..13488
                     /gene="HMCN1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    13516..13533
                     /gene="HMCN1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    13555..13566
                     /gene="HMCN1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    13597..13752
                     /gene="HMCN1"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
     misc_feature    13765..13923
                     /gene="HMCN1"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
     misc_feature    13936..14094
                     /gene="HMCN1"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
     misc_feature    14107..14265
                     /gene="HMCN1"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
     misc_feature    14278..14436
                     /gene="HMCN1"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
     misc_feature    14449..14607
                     /gene="HMCN1"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
     misc_feature    14602..15276
                     /gene="HMCN1"
                     /note="G2 nidogen domain and fibulin; Region: G2F;
                     smart00682"
                     /db_xref="CDD:214774"
     misc_feature    order(14620..14622,14680..14682,14686..14688,14716..14718,
                     14722..14724,14728..14730,15199..15201,15214..15216,
                     15226..15228,15232..15234)
                     /gene="HMCN1"
                     /note="collagen/perlecan interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:238158"
     misc_feature    15319..15438
                     /gene="HMCN1"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(15319..15321,15328..15330,15367..15369)
                     /gene="HMCN1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    15439..15573
                     /gene="HMCN1"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(15439..15441,15448..15450,15496..15498)
                     /gene="HMCN1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    15574..15687
                     /gene="HMCN1"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(15574..15576,15583..15585,15622..15624)
                     /gene="HMCN1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    15688..15789
                     /gene="HMCN1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(15688..15690,15697..15699,15739..15741)
                     /gene="HMCN1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    15814..15909
                     /gene="HMCN1"
                     /note="Calcium-binding EGF domain; Region: EGF_CA;
                     pfam07645"
                     /db_xref="CDD:429571"
     misc_feature    order(15814..15816,15823..15825,15871..15873)
                     /gene="HMCN1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    15943..16062
                     /gene="HMCN1"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(15943..15945,15952..15954,15994..15996)
                     /gene="HMCN1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    16294..16413
                     /gene="HMCN1"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(16294..16296,16303..16305,16342..16344)
                     /gene="HMCN1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    16414..16524
                     /gene="HMCN1"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(16414..16416,16423..16425,16471..16473)
                     /gene="HMCN1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
ORIGIN      
        1 atgatttcct gggacattgt ccgcacagta ttcctgttca ctcttcttta tacttcccag
       61 gctcaggaag caagacccca gtcagagatc agggctgagg aaattcccga gggggcctcc
      121 acgttggctt ttgtgtttga tgtgacgggt tccatgtatg atgatttagt tcaggttatc
      181 gagggggctt ccaaaatttt ggagacgtct ttgaaaagac ctaagagacc tcttttcaac
      241 tttgctttgg tgcctttcca tgatccagaa attggcccag taacagttac cacagatccc
      301 aagaaatttc agtatgaact cagagaactc tatgttcagg gtggtggtga ttgtccagaa
      361 atgagtattg gagctataaa aactgccttg gaaatttctc ttcctggttc tttcatctat
      421 gttttcactg atgcacggtc caaggattat cggctcaccc atgaggtgct gcagcttatc
      481 caacagaaac agtcacaagt ggtatttgtg ctcactggag attgtgatga caggggccat
      541 attggatata gagtctatga agaaattgcc tctacaagtt ctggtcaagt gttccatctg
      601 gacaaaaaac aagttaatga ggtgttaaaa tgggtagagg aagcggttca ggcttccaaa
      661 gttcacctct tgtcaacaga tcatttggaa caggctgtaa acacttggaa aattcctttt
      721 gatcccagtc taaaagaggt tactgtgtct ctgagtggcc cttctccagt gattgaaatt
      781 cgcaatcctt tagggaagct gataaaaaag ggatttggcc tgaatgaact attaaatatt
      841 cataactctg ccaaggtggt gaatgttaaa gagccagagg ctggaatatg gacagtgaag
      901 acgtctagca gtggaaggca ctctgttcgc atcaccggcc tcagtactat tgattttcga
      961 gctggttttt cccgaaagcc caccctggac ttcaaaaaca cagtcagcag accggtgcaa
     1021 ggaatgccta cctatgtgct gctgaatact tctggaattt ccatcccagc tagagtagat
     1081 cgtcttgaac ttctgagtat ctcaggcagc tctcttaaga caattcctat taaatattat
     1141 ccagatagaa aaccttatgg catatggaat atttctgact ttacaccacc aaatgaagct
     1201 ttctttctca aagtaacagg ctatgataag gatgattatc tcttccagag agtatcaggt
     1261 gtttccttct ctagtatcgt cccagatgct cccaaagtta caatgcctga gaaaaccccg
     1321 ggatactacc tgcagccggg ccaaattcac tgctctgttg agagtctttt gccctttacc
     1381 ttgagctttg ccagaaatgg agttacactt ggagtagacc agtacttaaa agaatcggcc
     1441 agtgtgacct gggatattga acaggtcact ttgtctgatg aaggctccta tgagtgcatt
     1501 gccgtcagca gtgcagggac tggacgggca gagacgttct ttgacgtatc agagcccccg
     1561 ccagtcatcc aagtgcctaa taatgttaca gtcgctcctg gagaaagaac acttttgacc
     1621 tgtcttgtca tcagtgcagt ggattacaat ctaacctggc ggaggaatga cagagatgtc
     1681 aggctggcag atccagcagg aatgaggatc ttggccaacc tttccctgga gctgaggagt
     1741 gtgaaattca gcgatgccgg agaatatcac tgtgtggttt ccagtgaagg aggattatcg
     1801 gctgcatcgg ttttcctcac agtgcaagaa ccgcccaaag tcactgttat gcccaagaat
     1861 cagtcattta caggtggatc tgaggtctcc atcatgtgtt ctgcaacagg ttatcccaaa
     1921 ccaaagatca cctggaccat gaatgatatg tttattgtgg gttcacacag gtataggatg
     1981 acctcagaag gtatcttatt tatcaaaaat gcagttccca aagatgcagg gatctatggt
     2041 tgcctggcaa gtaattcagc tgggatggat aaacagactt ctaccctcag atacactgaa
     2101 gccccgaagt tgatcgtaat tcagagtgag ctcttggttg cccttgggga tacaacagtt
     2161 atggaatgta aaacgtctgg tgttcctcca cctcaggtta agtggttcaa aggggatctt
     2221 gagttgaggc cctccccatt tctcatcatt gaccctctct tgggactttt gaagattcaa
     2281 gaaactcaag atctggatgc tggtgattat acctgtgttg ctgtcaatga tgccggaaga
     2341 gcaactggca agataactct ggatgttggc tcacctccag tttttataca agaacctgct
     2401 gatgtgtcta tggaaattgg ctcaaatgtg acattacctt gctatgtcca gggttatcca
     2461 gaaccaaaga ttaaatggcg aagattagac aacatgccca tctactcaag acctttttca
     2521 gtgagttcca tcagccaact aagaacagga gctctcttta tttcaaactt atgggcaagt
     2581 gataaaggaa catatatttg tgaagctgaa aaccagtttg gaaagatcca gtcccaggca
     2641 acagtaacag tgacaggact tgttgctcca ctcattggaa tcagcccttc agtgaccagt
     2701 gtaattgaag gacagcagct gactttgcct tgtgttctat tggctggaaa tcccattcca
     2761 gaacgtcggt ggattaagaa ctcagccatg ttggtccaaa atccttacat cactgtacgc
     2821 agtgacggga gtctccatgt tgaaagagct cggctgcagg acgggggcga gtatacttgt
     2881 gtggccagta atgttgctgg aaccattagc aaaactacca ctgtggacgt gcatgttctg
     2941 ccaaccattc agcatggaca gcaggtactc agtaccattg aaggcattcc agtaacttta
     3001 ccatgcaagg caagtggaat ccccaaacca tctatcatct ggtccaagaa gggcgagcgg
     3061 atttccacca gcagtgctaa gttttccgca ggggctgacg gaagtctata tgtggtgtcc
     3121 cctggaggtg aggagagcgg ggagtacgtc tgcactgcca ccaatgcagc cggctacgcc
     3181 aaaaggaaag tgcagctgac cgtctatgta aggcccagag tgttcggaga tcaacgagga
     3241 ctgtcccagg ataagcctat tgagatctca gtccttgcag ggggagaggt gacacttcca
     3301 tgtgaagtga agagcttacc cccacccata attacctggg ccaaagaaac ccagctcatc
     3361 tcgccattct ctccaagaca cacgttcctt ccttctggtt caatgaagat cactgagacc
     3421 cgcgtttcag atagtgggat gtatctttgc gttgccacaa atattgctgg gaacgtgact
     3481 cagtctgtta aattaaatgt ccatgtgcct ccaaagatac agcgtggacc tacaattatg
     3541 aaggtccaag ttggtcaaag agtggacatc ccatgcagtg ctcaagggac gcctcttcct
     3601 gtaatcacct ggtttacagg tggaagcgcc attttggttg atggactgca gcatattagt
     3661 catccagatg gaacattcag catcgaccaa gctgtgctct ccgatgctgg catatataca
     3721 tgtgtcgcta ctaacatagc aggcagtgat gagacggaga taacgctaca tgtccaagaa
     3781 ccacctacgc tggaagatct ggagcctcca tataacactc cattccaaga aagagtggcc
     3841 agtcaacgca ttgcatttcc atgtcctgca aaaggtaccc ccaaaccaac catcaaatgg
     3901 ttgtggaatg gtagagagct gacagccaga gatcctggta tttctatatt agaagatggc
     3961 acattgttgg ttattgcttc cgttacgcca tatgacaatg gggagtacat ttgtgtggca
     4021 gtcaatgaag cgggaaccac agaaagaaaa tataacctca aagtccatgt tcctccagta
     4081 gttaaagata aagagcaagt aacaaatgtg tccgtgttgg tcaaccagct gaccagtctc
     4141 atttgtgaag ttgaaggtac tccatctccc atcattatgt ggtataaaga tgacgtccag
     4201 gtgactgaaa gcagcactat tcagattgtg agcaatggga agatattaaa gctcttcaaa
     4261 gccactccag aggatgcagg aagatactcc tgcaaagcaa ttaatactgc aggcacttct
     4321 caaaagtatt ttaacatcga tgtgctagtc ccacccacca taataggtac cagctcccca
     4381 agtgaagtct cagttgtcct caaccaggat accacccttg aatgccaagt caaaggcact
     4441 ccctttccca ttattcactg gttcaaagat ggcaagcctt tatttttggg agactctaat
     4501 attgaacttc tagacaaagg acaaatttta catttaaaga atgcacgaag aagtgacaag
     4561 ggacgctacc agtgtactgt gtctaatgca gctggcaaac aagccaagga tataaaactg
     4621 actatctata ttccacctag tattaaagga gggaatgtca ccacagaaat atcagcactg
     4681 atcaacagca taattaaact ggaatgtgaa acacggggac ttccaatgcc tgttattact
     4741 tggtataaag acggccaacc aatcatatcc agctcacaag cactttatat tgataaagga
     4801 caatttcttc atatccctcg agcacaggtc tctgattcag caacatataa gtgtcaagta
     4861 accaatgttg ctgggactgc tgaaaaatca ttccatgtgg atgtctatgt tcctccaatg
     4921 attgaaggtg acttggctgc gcctctcagt aagcaagtgg ttattgctca ttcgttgaca
     4981 ctggaatgta aagctgctgg caaccctcct ccagttctca cctggttgaa agacggtgta
     5041 cctgtgaaag cgagtaacaa catccgcata gaagctggtg ggaagaaact agaaatcatg
     5101 ggtgccttag aagtcgacag gggacagtat atatgtgtgg ctaccagtgt ggcaggagaa
     5161 aaggaaatca aatacgaagt tgacgtccta gtgccaccag ctatagaagg aggagatgaa
     5221 atgtcttact tcattgtgat ggttaataac ttactggagc tagattgtca agtgacaggc
     5281 tctcctccac caactatcat gtggctgaag gatggccagc taattgatga aagggatgga
     5341 ttcaagatct tactcaatgg acacaaactg gttattgccc aggctcaagt gtcagacaca
     5401 ggcctttatc ggtgtgtagc aacaaacact gctggggacc acaagaagga atttgaagtg
     5461 actgttcatg ttcctccagc aatcaaatcc tcagggcttt ctgagagagc tgtagtaagg
     5521 tataagccca tcaccttgca gtgcatagcc aatggcattc caaagccatc cattacatgg
     5581 ctaaaagatg gccaacctgt caacactgcc caaggaaacc tcaaaataca gtcttctggt
     5641 cgagttctac aaattgccaa agccctcatg gaagatgctg gcagatacac atgtgtggct
     5701 accaatgcag ctggagaaac acaacagcac attcaactgc atgtgcatga accacccagt
     5761 ctggaggatg cagggaagat gctgaatgag accgtggtag tgaacaaccc catacagctg
     5821 gagtgtaagg caactggaaa tccctcacct gctattacat ggtacaaaga taatcgtcca
     5881 ctattaggtt ccagtagcat gactttcttg aacagaggac agatcatcaa tatcgaaagc
     5941 acccagatca cagatgctgg catatataaa tgtgtggcca tcaactcagc tggagctaca
     6001 gagttatttt atagtctaca ggtccatgtg cccccatcaa tttctggcag caataacatg
     6061 gtggcagtgg tagttaataa cctggtgagg ttagaatgtg aagccagagg tatccctgcc
     6121 ccaagtctga cctggttgaa agatgggagc cctgtcgcta gtttcactaa tgggatacag
     6181 gttctgtctg ggggccgcat cctagccttg accagcgcgc aaatcagtga tacggggaga
     6241 tacacctgtg tggcagtaaa tgctgctggg gagaaacaaa gggacattga cctcagagta
     6301 tatgttgcac caaatattat gggagaagaa cagaacgtct ctatcctcat tagccaagct
     6361 gtggagttac tatgtcaaag tgatgcaatt cccccaccga ctctgacctg gttaaaagac
     6421 ggccacccct tgctgaagaa accaggcctc agtgtcactg aaaatggaag tgtgttaaag
     6481 atcgaagatg ctcaggttca agatagtggt cgttacactt gtgaggcaac aaatgttgct
     6541 ggaaaaactg agaaaaacta taatgtcaac atttgggtac caccgaatat ttatggttct
     6601 gatgaacttg ctcaacttac agtcattgaa gggcatctta ttagtctatt gtgtgaatca
     6661 agtggtattc cacccccaaa tctcatttgg aagaagaaag gttccccagt gctggctgat
     6721 tctgcagggc gggtcagaac tttatctgga ggcaggcagt tgcagatttc agttgcagaa
     6781 gaatctgatg cagggctcta tacatgtgtg gcatcaaatg ttgctggaac agcaaagaaa
     6841 gactacaatc tgcaagttta cattcgacca actatagcca acagtggcag ccaccctact
     6901 gaaatcatcg taactcgagg gaagagcatt tccttagagt gtgaggtgga gggtattcct
     6961 caaccgacag tgacctggat gaaagatggc cgccctttaa ctaagggaag gggaatggaa
     7021 gtaacggatg aaggtcatat ccttcaactg aagaacgtcc atgtgtctga cacaggccgt
     7081 tatgtgtgtg ttgctgtgaa tatagcagga atgactgaca gaaaatatga cttaagtgta
     7141 cacacccctc caagcatcat aggaaaccac aggacacctg aaaatatcag tgtggtggaa
     7201 aaaaactcag tgtccctaac ttgtgaagct tcaggaattc ccctgccttc aattacctgg
     7261 cttaaagatg ggtgtcctgt caactttagc agttctctga gaattctctc aggaggaagg
     7321 actctgcggt tgatgcagac cagaatggaa gatgctggcc agtatacttg tgtagtaagg
     7381 aatgcagctg gtgaagaaag aaaaaccttt gggctttcag tattagtacc acctcacatt
     7441 gtgggtgaaa atacatttga agatgtgaag gtaaaagaga aacagagtgt tgcattgact
     7501 tgtgaagtga cagggaatcc agtgccagaa attacatggc agaaagatgg gcagttcctc
     7561 aaagaagatg acacccatca tcttatgtct ggtggccgtt ttcttcagat taccaatgcc
     7621 caagtgtcac acactggaag atatacatgt ttggcttcta atacagctgg tgacaagagc
     7681 agaagtttca gtcttaatgt gttggtatct cctacaattg ctggtgttga tagtgatggc
     7741 atccctgaag atgtcactgt tatccttaac agccccacat ctttggtctg tgaagcttat
     7801 tcatatcccc cagccaccat cacctggttt aagaatggaa ctcctttaga atccaaccga
     7861 aatatccgta ttcttccagg aggtaggact ctgcagatcc taaatgcaca ggaggacagt
     7921 gctgggagat actcttgtgt agccactaat gaggctggag agatgataaa gtactatgaa
     7981 gtgaaggtct acattccacc cataatcagt aaaagagacc tcctggggcc aggtgtttcc
     8041 cccaaagaag tgaagatcaa agtaaacaac accctgacct tggaatgtga agcctatgca
     8101 attccttctg cctctctcag ctggtacaag gatggacagc cccttaaagc agatgatcat
     8161 gttactattg ctgccagtgg acacacactt caaatcaggg aggctcaaat atcagacact
     8221 ggacgataca cgtgtatagc gtctaatatc gcaggtgaag atgagctgga ttttgatgtg
     8281 aatatacaag ttcctccaag ttttcacaag ctctgggaaa taggaaacat gctggatact
     8341 ggcaggagtg gtgaagccaa ggatgtgatc atcaacaatc ccatctctct ttactgtgag
     8401 acaaatgctg ctcctcctcc tacactgaca tggtataaag atggtcaccc tctgacctca
     8461 agtgatagag tattgatttt accaggaggg cgagtgttac agattccccg ggctaaagtg
     8521 gaagatgctg ggagatatat gtgtgtggct gtgaatgagg ctggagaaga ttcccttcag
     8581 tatgatgtcc gtgtactctt gccgccagtt atccagggag cagacagtga tctgcctgaa
     8641 gaggtcaccg tgctggtgaa caagagcatg ctggtggagt gtttatccag tggcagcccc
     8701 acaccgagaa attcctggca aagagatggg cagttcttgc tagaagatga gcatcataaa
     8761 tttctatcta atggaagaat tctgcagatt ctaaacactc aaataacaga tatcggcagg
     8821 tatgtgtgta ttgctgagaa cacagctgga agtgccaaaa aatattttaa cctcaatgtt
     8881 catgttcctc caagtgtcat tggtcctaac cctgaaaatc tcactgttgt ggtgaacaat
     8941 ttcatctctt tgacctgtga ggtctctggc tttccacctc ctgatctcag ctggctcaag
     9001 aatgaacagc ctatcaagct aaacacaaat gctctcattg tgcccggtgg tcgaacttta
     9061 caaattatcc gggccaaggt atctgatggt ggtgaataca cttgtatagc catcaaccaa
     9121 gctggtgaaa gcaagaaaaa agtttccctg actgtttatg tgcccccaag cattaaagat
     9181 catggcagcg aatctctttc tgtagttaat gtaagagagg gcacctcagt gtcattggag
     9241 tgtgaatcga atgctgtccc acctccagtc atcacctggt ataagaatgg gcggatgcta
     9301 acagagtcta ctcagctgga gattttggcc gatggacaaa tgctgcacat cacgaaagct
     9361 gaggtatctg acacaggcca gtatgtatgt agagctataa atgtagcagg acgggatgat
     9421 aaaaatttcc acctcaatgt atatgtgcca cccagtattg aagggcctga aaaagaagtc
     9481 attgtggagg caatcagcaa tcctgtgact ttaacatgtg atgccactgg aatcccacct
     9541 cccatgatag catggttaaa gaaccacaaa cccatagaaa attctgactc acttgaagtt
     9601 catattttgt cgggaggtag caaactccaa attgcccggt cccagcattc agacagtgga
     9661 aactatacat gcattgcatc aaatatggag ggaaaagcac agaaaaatta cattctttca
     9721 attcaagttc ctccaaatgt tgctggtgct gagattccaa gtgaagtcag tgtccttctt
     9781 ggggaaaatg ttgagctggt ctgcaatgca aatggcattc ctacccctct tattcagtgg
     9841 cttagagatg gaaagcccat aactaacagt gaaacagaaa gaattcgggt gactgcagat
     9901 ggcagcacat taaacattta cgaagccctc ccatctgaca tggggaaata cacgtgtgtt
     9961 gctactaatc ctgctggaga agaagaccga atttttaact tgaacgtcta tgttccacct
    10021 gcaattaggg gtaataaaga agcagcagag aaactaatgg ctttggtaga tacttcaata
    10081 aatattgaat gcagagccac agggatgcct ccaccacaga taaactggct aaagaatgga
    10141 cttcctctgc ctctctcctc ccatgtccgg ttgctgtctg gaggacaagt tgtcaggatt
    10201 gtgagagctc aggtgtctga tgatgctgtg tatacttgtg tggcctccaa cagagctggg
    10261 gtggataata aacattacag tcttcaagtc tttgtaccac caaaattgga caatgggatg
    10321 ggaacagagg aaatcacaat tgtcaagggt agttccacct ccatgccatg ttttactgat
    10381 ggaaccccaa ctcccaggat gtcctggctt agagatggcc agcctctggg gcttgatgcc
    10441 catctgttaa taagctctca agaaatggtc cttcagctca tcaaagcaga aacggaagat
    10501 tcaggaaggt acacctgcat tgcctcaaat gaagcaggag aaatcagtaa acactttatc
    10561 ctgaaggtcc tagaaccacc tcatatcaat ggatctgaag aacctgtaga gatgtcagta
    10621 attgttaata atccacttga acttacctgc attgcttctg gaatcccagc tcctaaaatt
    10681 acctggatga aagacggacg gccccttcca caggtggatc agatgcaaac tcttggagga
    10741 ggagaggttc ttcgaatatc taatgctcag gtggaagata caggaagata tacgtgtctg
    10801 gcatccagtc ctgcaggaga tgatgacaaa gaatatttag tgagagtgca tgtcccccct
    10861 aatattgctg gaactgatga accccaggat ttcactgtgt tacggaacag acaagtgaca
    10921 ttggaatgca aatcggatgc agtgccccca cctgtaatca cctggcttaa aaatggagaa
    10981 cggttacagg caacacctcg agtaagaatc ctatctggag ggagatactt gcaaattaat
    11041 aatgcagatc taggtgatac agccaattat acctgtgttg ccagcaacat tgcaggaaag
    11101 actacaagag aatttattct cactgtaaat gttcctccaa gcataaagag tggcccccag
    11161 agtcttgtca ttcacttaaa taagtctact gtattggaat gctttgcgga aggtgtgcca
    11221 gccccaagga taacatggag aaaggatgga gctgttctat ctgagaatca tgcaagatac
    11281 tccatcttgg aaaatggatt ccttcacatc cagtcagcac atgttactga tagtgggaga
    11341 tacttgtgta tggctaccaa tgctgctgga acagatcgca ggcgaataga tttacaagtc
    11401 catgttcctc catctattgc tctgggtcct accaacataa ctgtaacagt aaatgttcaa
    11461 accactctgg cttgtgaggc tactgggata ccaaaaccat caatcaactg gagaaaaaat
    11521 gggcatcttc ttaatgtgga tcaaaatcag aattcatacc ggctcctttc ttcaggttca
    11581 ctagtaatta tttccccttc tgtggatgac acggcgacct atgagtgcac tgtgacaagt
    11641 gatgccggag aggataagag aactgtggat ctcactgtcc aagttccacc ttccatagct
    11701 gatgagccta ctgacttctt agtaaccaca cacgccccca ccgtgatcac ctgcacagct
    11761 tcaggagttc catttccctc aattcactgg gcgaaaaatg gtataagact gcttcccaga
    11821 ggagagggct ataaaattct gtcctcagga gcaattgaaa tatttgccac tcaattaagc
    11881 catgctggaa gatatacttg tgttgccagg aatgcagctg gttctgcaca tcgacatgtg
    11941 agcctttatg tccaagagcc tccagtcatt cagcctcagc caagtgaact agccgtcatt
    12001 ctaaacaatc ccattttatt accatgtgaa gcaacaggga ctcccagtcc tttcatcact
    12061 tggcaaaagg aaggtatcaa tgtcatcact tcaggtagaa gccatgcagt tcttcctcgt
    12121 ggtggcttgc agatctccag agctgtcaga gaggatgcgg gtacttacat gtgtgtggct
    12181 cagaatccag ctggtacagc cttgggcaaa atcaagttaa atgtccaagt tcctccagtc
    12241 attagccccc atcctaagga atatatcatt gctgtggata agcccatcat gctaccctgt
    12301 gaggcagatg gcctcccacc acctgacatt acgtggcata aagatgggca tgtaattatg
    12361 gaatcaatcc gccagcacgt cctcagctct ggagctctgc aaatagcatt tgctcagcct
    12421 ggtgatgctg gccagtacac gtgcacagca gctaatgtgg caggatcaag cagcacgagc
    12481 accaagctca ctgtccatgt accacctaga attcaaagta cagaagtaca ttacaccgtc
    12541 aatgagaatt cacaagccgt tcttccatgc gtggctgatg gaatccccac accagcaatt
    12601 aactggaaaa aagacaatgt tcttttggct aacttgttag gaaaacacac tgtcgaaccc
    12661 tatggggagc tcattctgga aaatgttgtg ccagaggatt ctggcaccta tacctgcgtt
    12721 gctaacaatg ctgcaggtga agacacacac accgtcagcc tgactgtgca tgttctcccc
    12781 acttttactg aacttcctgg agatgtgtca ttaaataaag gagaacagct acgattaaac
    12841 tgtaaagcaa ctggtattcc attgcccaag ttaacatgga ccttcaataa caatattatc
    12901 ccagcccact ttgacagtgt aaatggacac agcgaacttg ttattgaaag gatgtcaaaa
    12961 gaagattcgg gtacttatgt gtgcactgca gagaacagcg ttggttttgt gaaggcaatt
    13021 ggatttgttt atgtgaaaga acctccagtc ttcaaaggtg attacccttc taactggatt
    13081 gaaccacttg gtggtaatgc aatcctgaat tgtgaggtga aaggtgatcc cgccccaact
    13141 atccagtgga gcagaagggg gatggatatt gaaattagcc acagaattcg gcaacttgga
    13201 aatggctccc tggccattta tggcactaca aatgaagatg ccggtgacta tacatgtgta
    13261 gctaccaatg aagctggggt ggtggagcgc agcatgagtc tgactctgca gagtcctcct
    13321 gttatcactc ttgagccaac agaaaccatt attaatgctg gtggcaaagt cgtcttgaat
    13381 tgtcaggcaa ctggagagcc tcatccaacc attacatggt cccgtcaggg gcactctatc
    13441 ccctgggatg agcgaattaa tgtgttgtcc aacaactcat tatatatcac cgctgctcag
    13501 aaagaagata catccgaata tgaatgtgtt gctcgaaact tgatgggttc tgtccttgtc
    13561 agagtgccag taatagtcca ggttcatggt ggcttttccc agtggtcaac ctggagatcc
    13621 tgcagtgtca cctgtgggaa aggcatccaa aagaggagtc gtgtgtgcaa caacccctct
    13681 ccagccaatg gtgggaagcc ttgccaggga tcggattcag aaatgcggaa ctgtcaacat
    13741 aagctgtgtc cagtggatgg taattggtca gagtggagcc cttgggaaga atgcacaagg
    13801 agctgcggac atggcaaccg aaccaggacc agaacttgca ataatccatc agctcagcat
    13861 ggtgggcagc catgtgaagg gaatgctgtg gaaataatca tgtgcaacat tagaccttgc
    13921 ccagttcatg gagcatggag tacttggcag ccttggggca catgcagcgt aagttgtggg
    13981 aagggtaccc aaacaagaat aagactgtgc aataacccac caccatcgtt tgatggatcc
    14041 tactgtgatg gagcagaaac acagatgcaa gtttgccatg aaagacactg tccagttgat
    14101 ggcaagtggg ccacttggac cagttggagt acctgcactg tgtcctgtgg aggaggtgcc
    14161 agacaacgaa caagggactg ctctgatcct gttccccagt atggaggcaa caagtgtgaa
    14221 gggagtgatg tgcagagtga tttttgcaat agtgactctt gtccaactca tggtaactgg
    14281 agtccttgga gtggctgggg aatgtgcagc cggacgtgta atggggggca gatgcggcgg
    14341 taccgcacat gtgataaccc tcgtccctcc aatggaggaa gagcttgtgg gggcccagac
    14401 tcccagatcc agagatgcaa cactgacata tgtcctgtgg atggaagttg gggaaactgg
    14461 catagttgga gctggtgttc tacctcttgt ggaggaggtg aaaagactcg aaaacgacaa
    14521 tgtaacaatc cagtaccatc caaaagtggt cgcccctgcc taggagatgc tactcaggta
    14581 tccagatgca atatacaagc atgcccaggt gggccccagc gagccagagg aagtgttatt
    14641 ggaagtatta atgatgtcga atttggaatt gctttcctta atgccacggt aacagatagc
    14701 ccaaactctg acaccaaaat aatacatgcc agaattacca atgtacctcg cagtctcggt
    14761 ccagcaatga gaaagataat ttccattcta aatcccattt attggacaac agcaaaggaa
    14821 ataggagaag cagtcaatgg cttcaccctc accaatgcgg tcttcaagag agaaacccaa
    14881 gtggaatttg caactggaga aatcttgcgg atgactcaca ttgcccgggg cttggattcc
    14941 gatggagctt tgctggtaga tatcgttgtg agtggctatg tcctgcagct gcagtcacct
    15001 gctgaagtca ctgtgaagga ttacacagag gactacattc aaacaggtcc tgggcagctg
    15061 tatgcctact caacccggct gttcaccgtt gatggcatca gcgtcccata cacatggaac
    15121 cacactgttt tctatgatga ggcacaggga agaatgcctt tcttggtaga aacacttcat
    15181 gcatcctctg tggaatctga ctacaaccag ttagaagaga cattgggttt taaaatccat
    15241 gcttcaattt ccaaaggaga tcgcagtaat cagtgcccct ctgggtttgc cttagattca
    15301 gttggaccct tttgtgctga tgaagatgaa tgtgcagcag ggaatccctg ctcgcatatc
    15361 tgtcacaatg ccatgggaac ttattattgc tcctgcccaa aaggcctcac tatagctgtg
    15421 gatggaagaa cttgtcaaga tattgatgag tgtgctttga gtggacacac ttgccatgct
    15481 ggtcaggatt gtgacaatac cattggatcc tatcactgtg tggtccgctg tggaactggc
    15541 tttcgaagaa ctagtgatgg gctgagttgt caagatatta atgaatgtca agaatccagc
    15601 ccctgtcacc accactgttt caatgccata ggaagttttc actgtggatg tgaacctggg
    15661 tatcaactca aaggcagaaa atgtgtggat gtaaatgagt gtagacagaa tgtatgcaga
    15721 ccagatcagc actgcaagaa cacccgcggt ggctataaat gcattgatct ttgcccaaac
    15781 ggaatgacca aggcagaaaa cggaacctgc attgatattg atgagtgtag agatgggacc
    15841 catcagtgca gatataacca aatatgtgag aatacgagag gcagctatcg ttgtgtatgt
    15901 ccaagaggtt accggtctca aggaattgga agaccctgta tggacattaa tgaatgtgaa
    15961 caagtgccta agccttgtgc atatcagtgc tccaacaccc ccggcagctt caagtgtatc
    16021 tgtccaccag gacaacattt attaggggac gggaaatctt gcgctggatt ggagaggctg
    16081 ccaaattatg gcactcagta caatagctat aaccttgcac ggttctcccc catgagaaac
    16141 aactatcaac ctcaacagca ttacagacag tactcacatc tctacagctc ctactcagag
    16201 tataggaaca gcagaacgtc tctctccagg actagaagga ctattagaaa aacttgccct
    16261 gaaggctctg aggcgagcca tgacacatgt atagatattg atgaatgtga aaatagagac
    16321 acctgccagc atgagtgtaa aaataccttt gggagctatc agtgtatctg cccgcctggc
    16381 tatcaactca tgctcaatgg aaagacatgt caagatgttg atgagtgtct ggagcagaat
    16441 gtacactgtg gaccgaatcg catgtgcttc aatatgagag gaagttacca gtgcatccag
    16501 acgccctgtc cacctgacta ccaacgggat cctgtgtcag ggttctgcct caagaactgt
    16561 ccacccaatg atttggaatg tgccttgagc ccgtatgcct tggaatacaa acttgtctcc
    16621 ctcccatttg gaatagacgc caatcaggat ttgatccggc tggttgcata cacacaggat
    16681 ggagtgatgc atcccaggac aactttcctc atgatagatg aggaacagac tgttcctttt
    16741 gccttaaggg atgaaaacct taaaggagtg gtgtacacaa cacgacctct acgagaacca
    16801 gagacctacc gcatgagggt tcaagcctta tcctacagtg ccaacgggac cattgactat
    16861 cagaccacat tcatagttta tatagctgtg tctgcctatc catactaagc agctctccaa
    16921 agcctaatcc acataattaa actgcatata tcatgggaat caagttctct tccagattac
    16981 tgtctcctga gcagttgcaa tcttggcaac ttgaaaatgg tgctatgctc ttttgtgtgc
    17041 cttccttggt actgctgagg tattttcatg atcccaccat ggtcatatct tttggtaagg
    17101 tctagaaaag tcccttagta ttttctttat ttattacact ggagcagata cttcgcaaag
    17161 attattctga acatctaaca ggacccatca gtgatgtgtt atagtaacat agtagctaag
    17221 ataatttcct gtaaaaaaaa gaaaaaaaaa gccaagtgga tttgagcatt taaccatttt
    17281 tagaataata aaactggttg ctatgtgttt tgatcaaagc ttaccgagta acttatgaag
    17341 atgctttttt tatgtattaa tactttataa taggacttac atacttatgt tcacttagga
    17401 aagaaatacc actcattgta gaaatatagt acagcttcta gaaagttttg ataccaaatg
    17461 atgctcacct tgattgaaca tccaaaatga ggagattatt ttcagtgact ttgtggaacc
    17521 agctgaacca gttaggataa caggaaaaaa tatttttgtc ctcagtgatt atttatggca
    17581 tggatctttg ctctaacatt tttgacatgg ccttccattc agttagcgcc ataacttttt
    17641 tttttttaag tctttattga atttgttaca atacttcttc tgttttatgt cttggttttt
    17701 ggccatgaga catgtgggat cttagctccc caaccaggga ctgaacccac accccctgca
    17761 ttggaaggca aagtcctaac cactggactg ccagggaagt cccatctcca taacttttac
    17821 gttctagact tttttaattt tcctgtcaat tggaaacaat ttattttaaa tacaggtggg
    17881 acagttttgt ttttcttgaa aatcttgtat gttcaaatta gcataaacgt taaacgtcaa
    17941 tacactgtaa atggtggtaa cagactctgg aagcaattgg caggatgtat tctattttta
    18001 tgaagtgtac atatatttcc ttcgtgtgta ttttctatat aatatcttga tggactcttt
    18061 tataaagtta ttttataaaa aaataacatt gttacagtaa aacctgcctc aataaaattt
    18121 tcacatcctt tttcttaa
//
LOCUS       XM_032606204            2916 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PBX homeobox interacting protein 1
            (PBXIP1), transcript variant X1, mRNA.
ACCESSION   XM_032606204
VERSION     XM_032606204.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2916
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2916
                     /gene="PBXIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116740546"
     CDS             132..2327
                     /gene="PBXIP1"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription
                     factor-interacting protein 1 isoform X1"
                     /protein_id="XP_032462095.1"
                     /db_xref="GeneID:116740546"
                     /translation="MASCPDSDNSWVLAGSENLPVETLGPESRMDLESERAPQAPWSP
                     SKAAAEELAGTLDGEETLFQSESSQSRPILPEETEAKGVLEGDDRGMESPGSGDTEVQ
                     GDLEETPEAVGLGLDTQDLEDQSPPNSLLSSPQTAWIREEAHCSSSEDDTDMDVEGLR
                     RRRGREPSTPQPAAPLGVEDQAGGEGAGRELGISLNMCLLGALVLLGLGILLFSGDLS
                     EAESGPMEEADLQVFPDTGSDTEMLEAEGDGQDGLKQQLQTSAPPDSVPSLQNMALLL
                     DKLAKENQDIRLLQAQLQAQKEELQSLMHQPKGLEEENAWLRGALQQGEASQRALELE
                     LQQLRAQLQGLEADCVRGTDGVCRYGGRGLRAGKVTKEQGPRGQVPSPGFLEQKKQLE
                     AEAQSLRQELERQRRLLGSVQRDLEQSLRDVGRGDPAHAGLAEVGHRLAQKLQGMENW
                     GQRPGVPANASEAWHQEPHFQSSREWSGKEKWWDGQRDRKTDHWKHKKEESGREKKKS
                     WGGEEDRELAGRWKEGKPWVEEWASKKDGKQQGSKEPPRKSGSPHSSRERQKHPQWKE
                     GAKDRHDPLPLWAELLRHKYQAPQGCSGVHECARQEGLAFFGMELAPVRQQELASLLR
                     TYLARLPWARQLTEELPLSPAYFGEDGIFRHDRLRFRDFVDALEDSLEEVAVRQTGDD
                     DEVDDFEDFIFSHFFGDKALKKRSGKKDKHWRNPRVVGPREEHSHQRQG"
     misc_feature    <852..1535
                     /gene="PBXIP1"
                     /note="Domain of unknown function (DUF4175); Region:
                     DUF4175; pfam13779"
                     /db_xref="CDD:463981"
ORIGIN      
        1 ccagtcctta gtcacatgac cttcctttct cggggctgtg aagctggaga gccagcaaca
       61 agttcagctg aagactgaag caagagctgg gtcaggtagc agcctcagta gccttgggga
      121 cctcagcaac tatggcctcc tgcccagact cggacaatag ctgggtgctt gccggctcag
      181 agaacctgcc tgtggagacc ctgggccctg aatccaggat ggacctagaa tccgagagag
      241 ctccccaggc cccttggagc ccctcgaagg cagctgctga ggagttagct gggaccttgg
      301 atggagaaga gaccctgttc cagagtgaga gctcccagtc caggcccatt ctgccagagg
      361 agactgaggc caagggtgtc ctggaaggtg atgatcgtgg aatggagtcc cctggctcag
      421 gagacacaga ggtccaggga gacttggagg agacccccga ggcagtaggc ctgggactgg
      481 acacacagga cctggaggat cagagtcccc ccaacagcct gctctcatcc ccccaaacag
      541 cttggatcag ggaggaggcc cactgctcca gcagtgagga cgacaccgac atggatgtgg
      601 agggtctgcg gagacggcgg ggccgggagc ccagcactcc tcagcctgca gcccccctgg
      661 gtgtggagga ccaggccggg ggtgagggtg cgggcaggga gctgggcatc tccctcaaca
      721 tgtgtctcct cggggccctg gttctgctgg gtctggggat cctcctcttc tccggtgatc
      781 tctcagaggc tgaaagtggg cccatggagg aagcggacct gcaggtcttc ccagataccg
      841 gctcggatac tgagatgctg gaggctgagg gggatgggca ggatgggcta aagcagcagc
      901 tgcagacctc agcgccccct gacagtgttc ccagcctgca gaacatggcc cttctgctgg
      961 acaagctggc caaggagaac caggatatcc ggctgctgca ggcccagctg caggcccaga
     1021 aggaagagct tcagagcctg atgcatcagc ccaaagggct ggaagaggag aatgcctggc
     1081 tccgaggggc cctacagcag ggcgaggcct cccagcgggc cctggagtta gagctgcagc
     1141 agctgcgggc ccagctccag ggcctggagg ctgactgtgt ccggggcaca gatggggtgt
     1201 gtcgctatgg gggcagaggc ctgcgggctg gcaaggtcac caaggagcaa ggccctaggg
     1261 ggcaggtgcc aagccctggc ttcctggagc agaagaaaca gctagaggct gaggcccagt
     1321 cattaaggca agagttggag aggcagcggc ggctgctggg gtctgtgcag cgggacctgg
     1381 agcagagctt gagggatgtg ggccgagggg acccagccca tgctggcctg gctgaggttg
     1441 gtcacaggct ggcccagaag ctgcagggca tggagaactg gggccagcgc cctggggtcc
     1501 ctgccaatgc ctcagaggcc tggcatcagg agcctcactt ccagagttcc agggagtgga
     1561 gcggaaagga aaagtggtgg gatgggcaga gggaccggaa gactgaccac tggaaacata
     1621 agaaggagga atctggccgg gaaaagaaga agagctgggg gggtgaggag gacagggagc
     1681 tggcagggag gtggaaggag ggcaagccat gggtggagga gtgggccagc aagaaggacg
     1741 gcaagcaaca gggttctaag gagcccccca ggaaaagtgg gagcccccac tcttccagag
     1801 aaaggcagaa acaccctcag tggaaggagg gggctaaaga caggcatgac cccctcccac
     1861 tctgggcaga gctgttgagg cacaagtacc aggcacccca gggctgctcg ggtgtgcacg
     1921 agtgtgcccg tcaggagggc ctggccttct ttggcatgga gctggcccct gtgcggcaac
     1981 aggagctggc ctctctgctg aggacgtacc tggcgcggct gccctgggcc aggcaactga
     2041 ccgaggagct acccctttct cctgcttact ttggtgagga cggtatcttc cgccatgacc
     2101 gcctccgctt ccgggacttt gtagatgcct tggaggacag cctggaggag gtggcagtga
     2161 gacagacagg tgatgatgat gaggtggatg actttgagga cttcatcttc agccacttct
     2221 ttggagacaa agcactgaag aagaggtctg ggaagaagga caaacactgg cggaacccca
     2281 gagttgtggg gcccagggag gaacacagcc accagcgcca gggctgaggc cccgtgctgt
     2341 ctgtcccctg ggaaccgtta aactgccacc tcccttggct cgtttggtgt ccttggatat
     2401 ccttcaccga ggagagcgga aatcacccag cccctaactg aaaccacttt tgctagaaaa
     2461 aggtcttagc tggacctgcc ttgctatcta tgcaaatgta tgcaaatatt caggacctgg
     2521 ggccgtgacc cttgcagcct gattgtgtca tgccagtggg ggggggaggg gagagaagcc
     2581 tgtttttttg ggggtggggt ggaggtaggg gggatggggc aattctaatt ctgaagccag
     2641 agagcttacc tccgtgcgtg tgtgtgtgtg tgtgcgcgcg cgcgtcgggg aggggagggg
     2701 gagagtgggc tccttggctg cacgcactga cccgggcccc ctgggatttg actatcctgg
     2761 ctggctgggg gcccagcatg agggtttccc ctggcgtttt gttagatttg gaaggagctg
     2821 tccccagggg ggtaaaaccc ccttttaagc cttgctgctc acctccacac gtgaactgta
     2881 gactcagatc ccaataaaat gctgttggag ctgtga
//
LOCUS       XM_032606210            2937 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PBX homeobox interacting protein 1
            (PBXIP1), transcript variant X2, mRNA.
ACCESSION   XM_032606210
VERSION     XM_032606210.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2937
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2937
                     /gene="PBXIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740546"
     CDS             240..2348
                     /gene="PBXIP1"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription
                     factor-interacting protein 1 isoform X2"
                     /protein_id="XP_032462101.1"
                     /db_xref="GeneID:116740546"
                     /translation="MDLESERAPQAPWSPSKAAAEELAGTLDGEETLFQSESSQSRPI
                     LPEETEAKGVLEGDDRGMESPGSGDTEVQGDLEETPEAVGLGLDTQDLEDQSPPNSLL
                     SSPQTAWIREEAHCSSSEDDTDMDVEGLRRRRGREPSTPQPAAPLGVEDQAGGEGAGR
                     ELGISLNMCLLGALVLLGLGILLFSGDLSEAESGPMEEADLQVFPDTGSDTEMLEAEG
                     DGQDGLKQQLQTSAPPDSVPSLQNMALLLDKLAKENQDIRLLQAQLQAQKEELQSLMH
                     QPKGLEEENAWLRGALQQGEASQRALELELQQLRAQLQGLEADCVRGTDGVCRYGGRG
                     LRAGKVTKEQGPRGQVPSPGFLEQKKQLEAEAQSLRQELERQRRLLGSVQRDLEQSLR
                     DVGRGDPAHAGLAEVGHRLAQKLQGMENWGQRPGVPANASEAWHQEPHFQSSREWSGK
                     EKWWDGQRDRKTDHWKHKKEESGREKKKSWGGEEDRELAGRWKEGKPWVEEWASKKDG
                     KQQGSKEPPRKSGSPHSSRERQKHPQWKEGAKDRHDPLPLWAELLRHKYQAPQGCSGV
                     HECARQEGLAFFGMELAPVRQQELASLLRTYLARLPWARQLTEELPLSPAYFGEDGIF
                     RHDRLRFRDFVDALEDSLEEVAVRQTGDDDEVDDFEDFIFSHFFGDKALKKRSGKKDK
                     HWRNPRVVGPREEHSHQRQG"
     misc_feature    <873..1556
                     /gene="PBXIP1"
                     /note="Domain of unknown function (DUF4175); Region:
                     DUF4175; pfam13779"
                     /db_xref="CDD:463981"
ORIGIN      
        1 cctcagtagc cttggggacc tcagcaacta tggcctcctg cccagactcg gacaatagct
       61 gggtgcttgc cggctcagag cgggagccat ggatgggatg agcgggcggt ggcctgtcaa
      121 gggggcatag gcggagaaag gagaggccgt ggctggacgg ccgggctgag agcaccttgg
      181 gagacagtct ggctgtggct gggaacctgc ctgtggagac cctgggccct gaatccagga
      241 tggacctaga atccgagaga gctccccagg ccccttggag cccctcgaag gcagctgctg
      301 aggagttagc tgggaccttg gatggagaag agaccctgtt ccagagtgag agctcccagt
      361 ccaggcccat tctgccagag gagactgagg ccaagggtgt cctggaaggt gatgatcgtg
      421 gaatggagtc ccctggctca ggagacacag aggtccaggg agacttggag gagacccccg
      481 aggcagtagg cctgggactg gacacacagg acctggagga tcagagtccc cccaacagcc
      541 tgctctcatc cccccaaaca gcttggatca gggaggaggc ccactgctcc agcagtgagg
      601 acgacaccga catggatgtg gagggtctgc ggagacggcg gggccgggag cccagcactc
      661 ctcagcctgc agcccccctg ggtgtggagg accaggccgg gggtgagggt gcgggcaggg
      721 agctgggcat ctccctcaac atgtgtctcc tcggggccct ggttctgctg ggtctgggga
      781 tcctcctctt ctccggtgat ctctcagagg ctgaaagtgg gcccatggag gaagcggacc
      841 tgcaggtctt cccagatacc ggctcggata ctgagatgct ggaggctgag ggggatgggc
      901 aggatgggct aaagcagcag ctgcagacct cagcgccccc tgacagtgtt cccagcctgc
      961 agaacatggc ccttctgctg gacaagctgg ccaaggagaa ccaggatatc cggctgctgc
     1021 aggcccagct gcaggcccag aaggaagagc ttcagagcct gatgcatcag cccaaagggc
     1081 tggaagagga gaatgcctgg ctccgagggg ccctacagca gggcgaggcc tcccagcggg
     1141 ccctggagtt agagctgcag cagctgcggg cccagctcca gggcctggag gctgactgtg
     1201 tccggggcac agatggggtg tgtcgctatg ggggcagagg cctgcgggct ggcaaggtca
     1261 ccaaggagca aggccctagg gggcaggtgc caagccctgg cttcctggag cagaagaaac
     1321 agctagaggc tgaggcccag tcattaaggc aagagttgga gaggcagcgg cggctgctgg
     1381 ggtctgtgca gcgggacctg gagcagagct tgagggatgt gggccgaggg gacccagccc
     1441 atgctggcct ggctgaggtt ggtcacaggc tggcccagaa gctgcagggc atggagaact
     1501 ggggccagcg ccctggggtc cctgccaatg cctcagaggc ctggcatcag gagcctcact
     1561 tccagagttc cagggagtgg agcggaaagg aaaagtggtg ggatgggcag agggaccgga
     1621 agactgacca ctggaaacat aagaaggagg aatctggccg ggaaaagaag aagagctggg
     1681 ggggtgagga ggacagggag ctggcaggga ggtggaagga gggcaagcca tgggtggagg
     1741 agtgggccag caagaaggac ggcaagcaac agggttctaa ggagcccccc aggaaaagtg
     1801 ggagccccca ctcttccaga gaaaggcaga aacaccctca gtggaaggag ggggctaaag
     1861 acaggcatga ccccctccca ctctgggcag agctgttgag gcacaagtac caggcacccc
     1921 agggctgctc gggtgtgcac gagtgtgccc gtcaggaggg cctggccttc tttggcatgg
     1981 agctggcccc tgtgcggcaa caggagctgg cctctctgct gaggacgtac ctggcgcggc
     2041 tgccctgggc caggcaactg accgaggagc tacccctttc tcctgcttac tttggtgagg
     2101 acggtatctt ccgccatgac cgcctccgct tccgggactt tgtagatgcc ttggaggaca
     2161 gcctggagga ggtggcagtg agacagacag gtgatgatga tgaggtggat gactttgagg
     2221 acttcatctt cagccacttc tttggagaca aagcactgaa gaagaggtct gggaagaagg
     2281 acaaacactg gcggaacccc agagttgtgg ggcccaggga ggaacacagc caccagcgcc
     2341 agggctgagg ccccgtgctg tctgtcccct gggaaccgtt aaactgccac ctcccttggc
     2401 tcgtttggtg tccttggata tccttcaccg aggagagcgg aaatcaccca gcccctaact
     2461 gaaaccactt ttgctagaaa aaggtcttag ctggacctgc cttgctatct atgcaaatgt
     2521 atgcaaatat tcaggacctg gggccgtgac ccttgcagcc tgattgtgtc atgccagtgg
     2581 gggggggagg ggagagaagc ctgttttttt gggggtgggg tggaggtagg ggggatgggg
     2641 caattctaat tctgaagcca gagagcttac ctccgtgcgt gtgtgtgtgt gtgtgcgcgc
     2701 gcgcgtcggg gaggggaggg ggagagtggg ctccttggct gcacgcactg acccgggccc
     2761 cctgggattt gactatcctg gctggctggg ggcccagcat gagggtttcc cctggcgttt
     2821 tgttagattt ggaaggagct gtccccaggg gggtaaaacc cccttttaag ccttgctgct
     2881 cacctccaca cgtgaactgt agactcagat cccaataaaa tgctgttgga gctgtga
//
LOCUS       XM_032606225            3263 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC adaptor protein 1 (SHC1), transcript
            variant X1, mRNA.
ACCESSION   XM_032606225
VERSION     XM_032606225.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3263
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3263
                     /gene="SHC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 11 long SRA reads, 25
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740554"
     CDS             3..1754
                     /gene="SHC1"
                     /codon_start=1
                     /product="SHC-transforming protein 1 isoform X1"
                     /protein_id="XP_032462116.1"
                     /db_xref="GeneID:116740554"
                     /translation="MDLLPPKPKYNPLRNESLSSLEEGASGSTPPEELPSPSASSLGP
                     MLPPLPGDDSPTTLCSFFPRMSNLKLANPAGGRLGPKGEPGRAAEDGEGIVGAAMPDS
                     GPLPLLQDMNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGV
                     SYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRKPCSRPLSS
                     ILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAY
                     VAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDG
                     SAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGVPQGAARPTPPSAQTPSHLGA
                     TLPVGQPVGGDPEARKQMLPPPPCPGRELFDDPSYVNVQNLDKARQAGSGAGPPNPAI
                     NGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAEALLQLNGDF
                     LVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPI
                     ISAGSELCLQQPVERKL"
     misc_feature    438..953
                     /gene="SHC1"
                     /note="Shc-like phosphotyrosine-binding (PTB) domain;
                     Region: PTB_Shc; cd01209"
                     /db_xref="CDD:269920"
     misc_feature    order(528..539,552..554,777..803,837..839,855..857,
                     894..896,903..908,912..917,924..929,936..947,951..953)
                     /gene="SHC1"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    order(666..668,678..680,747..749)
                     /gene="SHC1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    1440..1751
                     /gene="SHC1"
                     /note="Src homology 2 (SH2) domain found in SH2 adaptor
                     protein C (SHC); Region: SH2_SHC; cd09925"
                     /db_xref="CDD:198179"
     misc_feature    order(1485..1487,1533..1535,1539..1541,1554..1556,
                     1569..1571,1596..1604)
                     /gene="SHC1"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198179"
     misc_feature    order(1566..1568,1599..1601,1605..1607,1611..1613,
                     1626..1634,1647..1649,1665..1667,1698..1706)
                     /gene="SHC1"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198179"
ORIGIN      
        1 ccatggatct cctgcccccc aagcccaagt acaacccact tcggaatgag tctctgtcat
       61 cgctggagga gggagcttca gggtccaccc caccggagga gctgccttcc ccatcagcct
      121 cgtctctggg gcccatgctg ccacctctgc ctggggacga tagtcccact accctgtgct
      181 ccttcttccc ccggatgagc aacctgaagc tggccaaccc ggctgggggg cgcctggggc
      241 cgaaggggga gccaggaagg gcagccgagg atggggaggg gatcgtaggg gcagccatgc
      301 cggactcagg ccccctgccc ctcctccagg acatgaacaa gctgagtgga ggcggcgggc
      361 gcaggactcg ggtggaaggg ggccagctgg ggggcgagga gtggacccgc cacgggagct
      421 ttgtcaataa gcccacgcgg ggctggctgc atcccaacga caaagtcatg ggacccgggg
      481 tttcctactt ggttcggtac atgggctgtg tggaggtcct gcagtcaatg cgtgccctgg
      541 acttcaacac ccggacgcag gtcaccaggg aggccatcag tctggtgtgt gacgctgtgc
      601 cgggtgccaa gggggcaaca aggaggagaa agccctgtag ccgtccactc agctccatcc
      661 tggggaggag taacctgaaa tttgctggaa tgccaatcac tctcaccgtc tccaccagca
      721 gcctcaacct catggccgca gactgcaaac agatcatcgc caaccaccac atgcaatcca
      781 tctcgtttgc gtctggcggg gacccggaca cagccgagta tgtcgcctat gttgccaaag
      841 acccggtgaa tcagagagcc tgccacatcc tggagtgtcc cgaagggctt gctcaggacg
      901 tcatcagcac cattggccag gccttcgagt tgcgtttcaa acaatacctc aggaacccgc
      961 ccaagctggt caccccccat gacaggatgg ctggctttga tggctcagct tgggatgagg
     1021 aggaagaaga gccacctgac catcagtact ataatgactt ccctgggaag gaaccccctc
     1081 ttgggggggt ggtggacatg agacttcggg aaggagtccc ccagggggct gctcgaccca
     1141 ctccacccag tgcccagacc cctagccacc tgggagccac gctgccagtg gggcagcctg
     1201 ttggaggaga cccagaagcc cgcaaacaga tgctgccccc gccaccctgc ccaggcagag
     1261 agctctttga tgatccctcc tatgtcaatg tccagaacct agacaaggca cggcaagcag
     1321 gcagtggggc cgggcccccc aatcctgcca tcaatggcag cgcgccccga gacctctttg
     1381 acatgaagcc ctttgaagat gccctgcggg tgcctccacc tccccagttg gtggccatgg
     1441 ctgagcagct ccgaggggag ccctggtttc acgggaagct gagccggcgg gaggccgagg
     1501 cactgctaca gctcaacggg gacttcctgg tgcgggaaag cacgaccacg cctggccagt
     1561 atgtgctcac tggcctgcag agtgggcagc ccaagcacct gctactggtg gaccctgagg
     1621 gtgtggttcg gacaaaggat caccgctttg agagtgtcag tcacctcatc agctaccaca
     1681 tggacaatca cttgcccatc atctctgcgg gcagcgaact gtgtctccag caacctgtgg
     1741 agcggaagct gtgatctgtc ccagtgctct ctcctagaag atgccctgtg accccttcca
     1801 ccctattgcc caattctcgg gacctcactt gggagtgttc tgtgggcttg gccttgtgta
     1861 gggatggggg tagtgtggac attgggttca gcgtccagct gagtgagagg gtttgagtca
     1921 ggagccaggg gtagagtcct gcttttcccc aaacctcacc aaagtattaa tgtacagagt
     1981 ggcccccttc cctgggcctt tcctgtgcca acttgatacc cccttcccca aggtgggtgc
     2041 tggaggcctg ggcagtatgc ctccttgtaa tggaaaatgt cctgtggtga taggcccagt
     2101 ggagcaatca cccttccagg gaaggggaat gaatcacacc cttagtctac ccctgggctc
     2161 agggtacccc agacccctct caacaaccct ccctcccagc gtttaaactt tgtgcctttg
     2221 accatctgct aggtctgaag atattttatg caaagagttc ttggggccct gaagtcaagc
     2281 atgggggtgc tgacaccttg gcttctggga ccccatcctc tccttgctca gtaccccctc
     2341 ccctttaggt tgggtgaaca gaggcaggag tggcagctgt cccctctcca ccgggatatg
     2401 cagcccttag agattgcctt aaagccccct cccagccagt ggggagatgg acctgcctct
     2461 tgctcagtgc ctcttgggtg gggcccctca ccccaggggg tctatatata catttggcaa
     2521 gtccatcccc ccccatgttg catgcatgtt atactctaga gccaaagtac aacccttcct
     2581 cctgtagcct ctgccctgcc tccccctgct ggggtggtgg ggggatgact gaagtgtcat
     2641 cctaggtgga ttttgtggag gtgggaacag gggcactgag actctaaagc agtagacaat
     2701 cctcagatac catcggtaga tttggaactg cgttttttat tttatatgca tatattttag
     2761 ggctgtagat ttactttact aatttgtttt ccatagctta ttcctgagca caaaatgata
     2821 ataatccatt tatacatcac ctttttgact tttcaaagcc cttttacaac tattggcatt
     2881 ttcctcaccc tggcctttgc cggtagcgtt atcttttctg agagaccaga ggccgagtgt
     2941 gagctaggac tagagaaact tggacctccc accgcgaggc tgggaggcag aagtttggct
     3001 gaatggctgt tagtttcaca cggggcgggc gggggcttgg ggacacttaa aacctgcagt
     3061 tattgaatcc cttctccagg ccgggtcctg cctcaacgac agaggagccg gtcctgctct
     3121 gtcattaggc cttgtggata agggagcgtg gactatctaa atcctcacct cccttttttt
     3181 tcttttcttt ttgtttggat gttttcacgg gtctcactta taccaaaggg aaagaatctt
     3241 cattaaagtc catatttctt cta
//
LOCUS       XM_032606234            4286 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC adaptor protein 1 (SHC1), transcript
            variant X2, mRNA.
ACCESSION   XM_032606234
VERSION     XM_032606234.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4286
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4286
                     /gene="SHC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 19 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740554"
     CDS             1023..2777
                     /gene="SHC1"
                     /codon_start=1
                     /product="SHC-transforming protein 1 isoform X2"
                     /protein_id="XP_032462125.1"
                     /db_xref="GeneID:116740554"
                     /translation="MDLLPPKPKYNPLRNESLSSLEEGASGSTPPEELPSPSASSLGP
                     MLPPLPGDDSPTTLCSFFPRMSNLKLANPAGGRLGPKGEPGRAAEDGEGIVGAAMPDS
                     GPLPLLQDMNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGV
                     SYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRKPCSRPLSS
                     ILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAY
                     VAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDG
                     SAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGVPQGAARPTPPSAQTPSHLGA
                     TLPVGQPVGGDPEARKQMLPPPPCPAGRELFDDPSYVNVQNLDKARQAGSGAGPPNPA
                     INGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAEALLQLNGD
                     FLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLP
                     IISAGSELCLQQPVERKL"
     misc_feature    1458..1973
                     /gene="SHC1"
                     /note="Shc-like phosphotyrosine-binding (PTB) domain;
                     Region: PTB_Shc; cd01209"
                     /db_xref="CDD:269920"
     misc_feature    order(1548..1559,1572..1574,1797..1823,1857..1859,
                     1875..1877,1914..1916,1923..1928,1932..1937,1944..1949,
                     1956..1967,1971..1973)
                     /gene="SHC1"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    order(1686..1688,1698..1700,1767..1769)
                     /gene="SHC1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    2463..2774
                     /gene="SHC1"
                     /note="Src homology 2 (SH2) domain found in SH2 adaptor
                     protein C (SHC); Region: SH2_SHC; cd09925"
                     /db_xref="CDD:198179"
     misc_feature    order(2508..2510,2556..2558,2562..2564,2577..2579,
                     2592..2594,2619..2627)
                     /gene="SHC1"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198179"
     misc_feature    order(2589..2591,2622..2624,2628..2630,2634..2636,
                     2649..2657,2670..2672,2688..2690,2721..2729)
                     /gene="SHC1"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198179"
ORIGIN      
        1 tcgctgtgga aagggggaca gaagagtgct tggcatgggc cgctgctcct tggcatggta
       61 ggcgccatgc atggagaaca agcctccacc agcctgtcct ctgctccagc tcctgcctgg
      121 tggctccctg atgcaccacc caggttggac tttattcccc ttacttcacc agctttgccc
      181 ttcctcttgg cccctccctg catccactgg gaccacgtcc ttccttttcc catttcttta
      241 gctccctcca cagctgtggt agcagaggat gctaatggcc caggctccct ggggccaccc
      301 catgtgtgat agtggtgggg ggtcgccggg ggtggccggg cctggaggag gagggagttt
      361 gagtgttcaa ctaggacagg aagggaattg ctgagctcag gaatcccctc cctttcccac
      421 ccccagctgc ctctgtttcc tccctcattc cccccactgc cctcccttag tttcctgctc
      481 cctttggcct gcccatgtct ggtttggatt gatgcagacc tcctcttgcc accctccttt
      541 ccttctcact cctccatcct tccctcccac tcccacttta ttcctctcca gattacttgc
      601 tgtttgtacc ggggcggggt ggggggggcg cgggcatgga tcgctctgcc ctgtaagagt
      661 tctgggttgg ggcagtgctg gaggcttagc ccctcagagc ctgtgagtca gcactgtcct
      721 cgggattggt ctctcccctt agcttcccgc ccctggggag gagccagtca gctctaggtc
      781 cagcccgttc tcctcacagc tagagaagag gctccacgct gggcggggat ggggcctgaa
      841 actctctggg tctgagcctg gggagccaga gccacttgtc cctctccctc cccaggaccc
      901 ttgagatccc tgggccagag aggtccgatc aggctaaggg cctgggatgc cccctgcctg
      961 gcccccttgc cctgactggc aggggggcca ggctgggcag cagccttcct ctcactccag
     1021 ccatggatct cctgcccccc aagcccaagt acaacccact tcggaatgag tctctgtcat
     1081 cgctggagga gggagcttca gggtccaccc caccggagga gctgccttcc ccatcagcct
     1141 cgtctctggg gcccatgctg ccacctctgc ctggggacga tagtcccact accctgtgct
     1201 ccttcttccc ccggatgagc aacctgaagc tggccaaccc ggctgggggg cgcctggggc
     1261 cgaaggggga gccaggaagg gcagccgagg atggggaggg gatcgtaggg gcagccatgc
     1321 cggactcagg ccccctgccc ctcctccagg acatgaacaa gctgagtgga ggcggcgggc
     1381 gcaggactcg ggtggaaggg ggccagctgg ggggcgagga gtggacccgc cacgggagct
     1441 ttgtcaataa gcccacgcgg ggctggctgc atcccaacga caaagtcatg ggacccgggg
     1501 tttcctactt ggttcggtac atgggctgtg tggaggtcct gcagtcaatg cgtgccctgg
     1561 acttcaacac ccggacgcag gtcaccaggg aggccatcag tctggtgtgt gacgctgtgc
     1621 cgggtgccaa gggggcaaca aggaggagaa agccctgtag ccgtccactc agctccatcc
     1681 tggggaggag taacctgaaa tttgctggaa tgccaatcac tctcaccgtc tccaccagca
     1741 gcctcaacct catggccgca gactgcaaac agatcatcgc caaccaccac atgcaatcca
     1801 tctcgtttgc gtctggcggg gacccggaca cagccgagta tgtcgcctat gttgccaaag
     1861 acccggtgaa tcagagagcc tgccacatcc tggagtgtcc cgaagggctt gctcaggacg
     1921 tcatcagcac cattggccag gccttcgagt tgcgtttcaa acaatacctc aggaacccgc
     1981 ccaagctggt caccccccat gacaggatgg ctggctttga tggctcagct tgggatgagg
     2041 aggaagaaga gccacctgac catcagtact ataatgactt ccctgggaag gaaccccctc
     2101 ttgggggggt ggtggacatg agacttcggg aaggagtccc ccagggggct gctcgaccca
     2161 ctccacccag tgcccagacc cctagccacc tgggagccac gctgccagtg gggcagcctg
     2221 ttggaggaga cccagaagcc cgcaaacaga tgctgccccc gccaccctgc ccagcaggca
     2281 gagagctctt tgatgatccc tcctatgtca atgtccagaa cctagacaag gcacggcaag
     2341 caggcagtgg ggccgggccc cccaatcctg ccatcaatgg cagcgcgccc cgagacctct
     2401 ttgacatgaa gccctttgaa gatgccctgc gggtgcctcc acctccccag ttggtggcca
     2461 tggctgagca gctccgaggg gagccctggt ttcacgggaa gctgagccgg cgggaggccg
     2521 aggcactgct acagctcaac ggggacttcc tggtgcggga aagcacgacc acgcctggcc
     2581 agtatgtgct cactggcctg cagagtgggc agcccaagca cctgctactg gtggaccctg
     2641 agggtgtggt tcggacaaag gatcaccgct ttgagagtgt cagtcacctc atcagctacc
     2701 acatggacaa tcacttgccc atcatctctg cgggcagcga actgtgtctc cagcaacctg
     2761 tggagcggaa gctgtgatct gtcccagtgc tctctcctag aagatgccct gtgacccctt
     2821 ccaccctatt gcccaattct cgggacctca cttgggagtg ttctgtgggc ttggccttgt
     2881 gtagggatgg gggtagtgtg gacattgggt tcagcgtcca gctgagtgag agggtttgag
     2941 tcaggagcca ggggtagagt cctgcttttc cccaaacctc accaaagtat taatgtacag
     3001 agtggccccc ttccctgggc ctttcctgtg ccaacttgat acccccttcc ccaaggtggg
     3061 tgctggaggc ctgggcagta tgcctccttg taatggaaaa tgtcctgtgg tgataggccc
     3121 agtggagcaa tcacccttcc agggaagggg aatgaatcac acccttagtc tacccctggg
     3181 ctcagggtac cccagacccc tctcaacaac cctccctccc agcgtttaaa ctttgtgcct
     3241 ttgaccatct gctaggtctg aagatatttt atgcaaagag ttcttggggc cctgaagtca
     3301 agcatggggg tgctgacacc ttggcttctg ggaccccatc ctctccttgc tcagtacccc
     3361 ctccccttta ggttgggtga acagaggcag gagtggcagc tgtcccctct ccaccgggat
     3421 atgcagccct tagagattgc cttaaagccc cctcccagcc agtggggaga tggacctgcc
     3481 tcttgctcag tgcctcttgg gtggggcccc tcaccccagg gggtctatat atacatttgg
     3541 caagtccatc cccccccatg ttgcatgcat gttatactct agagccaaag tacaaccctt
     3601 cctcctgtag cctctgccct gcctccccct gctggggtgg tggggggatg actgaagtgt
     3661 catcctaggt ggattttgtg gaggtgggaa caggggcact gagactctaa agcagtagac
     3721 aatcctcaga taccatcggt agatttggaa ctgcgttttt tattttatat gcatatattt
     3781 tagggctgta gatttacttt actaatttgt tttccatagc ttattcctga gcacaaaatg
     3841 ataataatcc atttatacat cacctttttg acttttcaaa gcccttttac aactattggc
     3901 attttcctca ccctggcctt tgccggtagc gttatctttt ctgagagacc agaggccgag
     3961 tgtgagctag gactagagaa acttggacct cccaccgcga ggctgggagg cagaagtttg
     4021 gctgaatggc tgttagtttc acacggggcg ggcgggggct tggggacact taaaacctgc
     4081 agttattgaa tcccttctcc aggccgggtc ctgcctcaac gacagaggag ccggtcctgc
     4141 tctgtcatta ggccttgtgg ataagggagc gtggactatc taaatcctca cctccctttt
     4201 ttttcttttc tttttgtttg gatgttttca cgggtctcac ttataccaaa gggaaagaat
     4261 cttcattaaa gtccatattt cttcta
//
LOCUS       XM_032606242            3092 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC adaptor protein 1 (SHC1), transcript
            variant X3, mRNA.
ACCESSION   XM_032606242
VERSION     XM_032606242.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3092
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3092
                     /gene="SHC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 18 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740554"
     CDS             159..1583
                     /gene="SHC1"
                     /codon_start=1
                     /product="SHC-transforming protein 1 isoform X3"
                     /protein_id="XP_032462133.1"
                     /db_xref="GeneID:116740554"
                     /translation="MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDK
                     VMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRKPC
                     SRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDT
                     AEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDR
                     MAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGVPQGAARPTPPSAQT
                     PSHLGATLPVGQPVGGDPEARKQMLPPPPCPAGRELFDDPSYVNVQNLDKARQAGSGA
                     GPPNPAINGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAEAL
                     LQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYH
                     MDNHLPIISAGSELCLQQPVERKL"
     misc_feature    264..779
                     /gene="SHC1"
                     /note="Shc-like phosphotyrosine-binding (PTB) domain;
                     Region: PTB_Shc; cd01209"
                     /db_xref="CDD:269920"
     misc_feature    order(354..365,378..380,603..629,663..665,681..683,
                     720..722,729..734,738..743,750..755,762..773,777..779)
                     /gene="SHC1"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    order(492..494,504..506,573..575)
                     /gene="SHC1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    1269..1580
                     /gene="SHC1"
                     /note="Src homology 2 (SH2) domain found in SH2 adaptor
                     protein C (SHC); Region: SH2_SHC; cd09925"
                     /db_xref="CDD:198179"
     misc_feature    order(1314..1316,1362..1364,1368..1370,1383..1385,
                     1398..1400,1425..1433)
                     /gene="SHC1"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198179"
     misc_feature    order(1395..1397,1428..1430,1434..1436,1440..1442,
                     1455..1463,1476..1478,1494..1496,1527..1535)
                     /gene="SHC1"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198179"
ORIGIN      
        1 ggtcaggggt tagtgaggcc ggaagtgagt gaaataaagt ttctccaggg aggccgggcc
       61 cggggagaaa gttggagcgg cgaccttaga aggcagtggc gtgatccgga accaaatcgg
      121 cccgcggtgc ggtgcggaga ctccatgaag ccctggacat gaacaagctg agtggaggcg
      181 gcgggcgcag gactcgggtg gaagggggcc agctgggggg cgaggagtgg acccgccacg
      241 ggagctttgt caataagccc acgcggggct ggctgcatcc caacgacaaa gtcatgggac
      301 ccggggtttc ctacttggtt cggtacatgg gctgtgtgga ggtcctgcag tcaatgcgtg
      361 ccctggactt caacacccgg acgcaggtca ccagggaggc catcagtctg gtgtgtgacg
      421 ctgtgccggg tgccaagggg gcaacaagga ggagaaagcc ctgtagccgt ccactcagct
      481 ccatcctggg gaggagtaac ctgaaatttg ctggaatgcc aatcactctc accgtctcca
      541 ccagcagcct caacctcatg gccgcagact gcaaacagat catcgccaac caccacatgc
      601 aatccatctc gtttgcgtct ggcggggacc cggacacagc cgagtatgtc gcctatgttg
      661 ccaaagaccc ggtgaatcag agagcctgcc acatcctgga gtgtcccgaa gggcttgctc
      721 aggacgtcat cagcaccatt ggccaggcct tcgagttgcg tttcaaacaa tacctcagga
      781 acccgcccaa gctggtcacc ccccatgaca ggatggctgg ctttgatggc tcagcttggg
      841 atgaggagga agaagagcca cctgaccatc agtactataa tgacttccct gggaaggaac
      901 cccctcttgg gggggtggtg gacatgagac ttcgggaagg agtcccccag ggggctgctc
      961 gacccactcc acccagtgcc cagaccccta gccacctggg agccacgctg ccagtggggc
     1021 agcctgttgg aggagaccca gaagcccgca aacagatgct gcccccgcca ccctgcccag
     1081 caggcagaga gctctttgat gatccctcct atgtcaatgt ccagaaccta gacaaggcac
     1141 ggcaagcagg cagtggggcc gggcccccca atcctgccat caatggcagc gcgccccgag
     1201 acctctttga catgaagccc tttgaagatg ccctgcgggt gcctccacct ccccagttgg
     1261 tggccatggc tgagcagctc cgaggggagc cctggtttca cgggaagctg agccggcggg
     1321 aggccgaggc actgctacag ctcaacgggg acttcctggt gcgggaaagc acgaccacgc
     1381 ctggccagta tgtgctcact ggcctgcaga gtgggcagcc caagcacctg ctactggtgg
     1441 accctgaggg tgtggttcgg acaaaggatc accgctttga gagtgtcagt cacctcatca
     1501 gctaccacat ggacaatcac ttgcccatca tctctgcggg cagcgaactg tgtctccagc
     1561 aacctgtgga gcggaagctg tgatctgtcc cagtgctctc tcctagaaga tgccctgtga
     1621 ccccttccac cctattgccc aattctcggg acctcacttg ggagtgttct gtgggcttgg
     1681 ccttgtgtag ggatgggggt agtgtggaca ttgggttcag cgtccagctg agtgagaggg
     1741 tttgagtcag gagccagggg tagagtcctg cttttcccca aacctcacca aagtattaat
     1801 gtacagagtg gcccccttcc ctgggccttt cctgtgccaa cttgataccc ccttccccaa
     1861 ggtgggtgct ggaggcctgg gcagtatgcc tccttgtaat ggaaaatgtc ctgtggtgat
     1921 aggcccagtg gagcaatcac ccttccaggg aaggggaatg aatcacaccc ttagtctacc
     1981 cctgggctca gggtacccca gacccctctc aacaaccctc cctcccagcg tttaaacttt
     2041 gtgcctttga ccatctgcta ggtctgaaga tattttatgc aaagagttct tggggccctg
     2101 aagtcaagca tgggggtgct gacaccttgg cttctgggac cccatcctct ccttgctcag
     2161 taccccctcc cctttaggtt gggtgaacag aggcaggagt ggcagctgtc ccctctccac
     2221 cgggatatgc agcccttaga gattgcctta aagccccctc ccagccagtg gggagatgga
     2281 cctgcctctt gctcagtgcc tcttgggtgg ggcccctcac cccagggggt ctatatatac
     2341 atttggcaag tccatccccc cccatgttgc atgcatgtta tactctagag ccaaagtaca
     2401 acccttcctc ctgtagcctc tgccctgcct ccccctgctg gggtggtggg gggatgactg
     2461 aagtgtcatc ctaggtggat tttgtggagg tgggaacagg ggcactgaga ctctaaagca
     2521 gtagacaatc ctcagatacc atcggtagat ttggaactgc gttttttatt ttatatgcat
     2581 atattttagg gctgtagatt tactttacta atttgttttc catagcttat tcctgagcac
     2641 aaaatgataa taatccattt atacatcacc tttttgactt ttcaaagccc ttttacaact
     2701 attggcattt tcctcaccct ggcctttgcc ggtagcgtta tcttttctga gagaccagag
     2761 gccgagtgtg agctaggact agagaaactt ggacctccca ccgcgaggct gggaggcaga
     2821 agtttggctg aatggctgtt agtttcacac ggggcgggcg ggggcttggg gacacttaaa
     2881 acctgcagtt attgaatccc ttctccaggc cgggtcctgc ctcaacgaca gaggagccgg
     2941 tcctgctctg tcattaggcc ttgtggataa gggagcgtgg actatctaaa tcctcacctc
     3001 cctttttttt cttttctttt tgtttggatg ttttcacggg tctcacttat accaaaggga
     3061 aagaatcttc attaaagtcc atatttcttc ta
//
LOCUS       XM_032606252            3223 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC adaptor protein 1 (SHC1), transcript
            variant X4, mRNA.
ACCESSION   XM_032606252
VERSION     XM_032606252.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3223
                     /gene="SHC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740554"
     CDS             290..1714
                     /gene="SHC1"
                     /codon_start=1
                     /product="SHC-transforming protein 1 isoform X3"
                     /protein_id="XP_032462143.1"
                     /db_xref="GeneID:116740554"
                     /translation="MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDK
                     VMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRKPC
                     SRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDT
                     AEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDR
                     MAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGVPQGAARPTPPSAQT
                     PSHLGATLPVGQPVGGDPEARKQMLPPPPCPAGRELFDDPSYVNVQNLDKARQAGSGA
                     GPPNPAINGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAEAL
                     LQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYH
                     MDNHLPIISAGSELCLQQPVERKL"
     misc_feature    395..910
                     /gene="SHC1"
                     /note="Shc-like phosphotyrosine-binding (PTB) domain;
                     Region: PTB_Shc; cd01209"
                     /db_xref="CDD:269920"
     misc_feature    order(485..496,509..511,734..760,794..796,812..814,
                     851..853,860..865,869..874,881..886,893..904,908..910)
                     /gene="SHC1"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    order(623..625,635..637,704..706)
                     /gene="SHC1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    1400..1711
                     /gene="SHC1"
                     /note="Src homology 2 (SH2) domain found in SH2 adaptor
                     protein C (SHC); Region: SH2_SHC; cd09925"
                     /db_xref="CDD:198179"
     misc_feature    order(1445..1447,1493..1495,1499..1501,1514..1516,
                     1529..1531,1556..1564)
                     /gene="SHC1"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198179"
     misc_feature    order(1526..1528,1559..1561,1565..1567,1571..1573,
                     1586..1594,1607..1609,1625..1627,1658..1666)
                     /gene="SHC1"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198179"
ORIGIN      
        1 ccggaagtga gtgaaataaa gtttctccag ggaggccggg cccggggaga aagttggagc
       61 ggcgacctta gaaggcagtg gcgtgatccg gaaccaaatc ggcccgcggt gcggtgcgga
      121 gactccatga agccctgctt gcttcgctgt ggaaaggggg acagaagagt gcttggcatg
      181 ggccgctgct ccttggcatg gtaggcgcca tgcatggaga acaagcctcc accagcctgt
      241 cctctgctcc agctcctgcc tggtggctcc ctgatgcacc acccaggaca tgaacaagct
      301 gagtggaggc ggcgggcgca ggactcgggt ggaagggggc cagctggggg gcgaggagtg
      361 gacccgccac gggagctttg tcaataagcc cacgcggggc tggctgcatc ccaacgacaa
      421 agtcatggga cccggggttt cctacttggt tcggtacatg ggctgtgtgg aggtcctgca
      481 gtcaatgcgt gccctggact tcaacacccg gacgcaggtc accagggagg ccatcagtct
      541 ggtgtgtgac gctgtgccgg gtgccaaggg ggcaacaagg aggagaaagc cctgtagccg
      601 tccactcagc tccatcctgg ggaggagtaa cctgaaattt gctggaatgc caatcactct
      661 caccgtctcc accagcagcc tcaacctcat ggccgcagac tgcaaacaga tcatcgccaa
      721 ccaccacatg caatccatct cgtttgcgtc tggcggggac ccggacacag ccgagtatgt
      781 cgcctatgtt gccaaagacc cggtgaatca gagagcctgc cacatcctgg agtgtcccga
      841 agggcttgct caggacgtca tcagcaccat tggccaggcc ttcgagttgc gtttcaaaca
      901 atacctcagg aacccgccca agctggtcac cccccatgac aggatggctg gctttgatgg
      961 ctcagcttgg gatgaggagg aagaagagcc acctgaccat cagtactata atgacttccc
     1021 tgggaaggaa ccccctcttg ggggggtggt ggacatgaga cttcgggaag gagtccccca
     1081 gggggctgct cgacccactc cacccagtgc ccagacccct agccacctgg gagccacgct
     1141 gccagtgggg cagcctgttg gaggagaccc agaagcccgc aaacagatgc tgcccccgcc
     1201 accctgccca gcaggcagag agctctttga tgatccctcc tatgtcaatg tccagaacct
     1261 agacaaggca cggcaagcag gcagtggggc cgggcccccc aatcctgcca tcaatggcag
     1321 cgcgccccga gacctctttg acatgaagcc ctttgaagat gccctgcggg tgcctccacc
     1381 tccccagttg gtggccatgg ctgagcagct ccgaggggag ccctggtttc acgggaagct
     1441 gagccggcgg gaggccgagg cactgctaca gctcaacggg gacttcctgg tgcgggaaag
     1501 cacgaccacg cctggccagt atgtgctcac tggcctgcag agtgggcagc ccaagcacct
     1561 gctactggtg gaccctgagg gtgtggttcg gacaaaggat caccgctttg agagtgtcag
     1621 tcacctcatc agctaccaca tggacaatca cttgcccatc atctctgcgg gcagcgaact
     1681 gtgtctccag caacctgtgg agcggaagct gtgatctgtc ccagtgctct ctcctagaag
     1741 atgccctgtg accccttcca ccctattgcc caattctcgg gacctcactt gggagtgttc
     1801 tgtgggcttg gccttgtgta gggatggggg tagtgtggac attgggttca gcgtccagct
     1861 gagtgagagg gtttgagtca ggagccaggg gtagagtcct gcttttcccc aaacctcacc
     1921 aaagtattaa tgtacagagt ggcccccttc cctgggcctt tcctgtgcca acttgatacc
     1981 cccttcccca aggtgggtgc tggaggcctg ggcagtatgc ctccttgtaa tggaaaatgt
     2041 cctgtggtga taggcccagt ggagcaatca cccttccagg gaaggggaat gaatcacacc
     2101 cttagtctac ccctgggctc agggtacccc agacccctct caacaaccct ccctcccagc
     2161 gtttaaactt tgtgcctttg accatctgct aggtctgaag atattttatg caaagagttc
     2221 ttggggccct gaagtcaagc atgggggtgc tgacaccttg gcttctggga ccccatcctc
     2281 tccttgctca gtaccccctc ccctttaggt tgggtgaaca gaggcaggag tggcagctgt
     2341 cccctctcca ccgggatatg cagcccttag agattgcctt aaagccccct cccagccagt
     2401 ggggagatgg acctgcctct tgctcagtgc ctcttgggtg gggcccctca ccccaggggg
     2461 tctatatata catttggcaa gtccatcccc ccccatgttg catgcatgtt atactctaga
     2521 gccaaagtac aacccttcct cctgtagcct ctgccctgcc tccccctgct ggggtggtgg
     2581 ggggatgact gaagtgtcat cctaggtgga ttttgtggag gtgggaacag gggcactgag
     2641 actctaaagc agtagacaat cctcagatac catcggtaga tttggaactg cgttttttat
     2701 tttatatgca tatattttag ggctgtagat ttactttact aatttgtttt ccatagctta
     2761 ttcctgagca caaaatgata ataatccatt tatacatcac ctttttgact tttcaaagcc
     2821 cttttacaac tattggcatt ttcctcaccc tggcctttgc cggtagcgtt atcttttctg
     2881 agagaccaga ggccgagtgt gagctaggac tagagaaact tggacctccc accgcgaggc
     2941 tgggaggcag aagtttggct gaatggctgt tagtttcaca cggggcgggc gggggcttgg
     3001 ggacacttaa aacctgcagt tattgaatcc cttctccagg ccgggtcctg cctcaacgac
     3061 agaggagccg gtcctgctct gtcattaggc cttgtggata agggagcgtg gactatctaa
     3121 atcctcacct cccttttttt tcttttcttt ttgtttggat gttttcacgg gtctcactta
     3181 taccaaaggg aaagaatctt cattaaagtc catatttctt cta
//
LOCUS       XM_032606261            3089 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC adaptor protein 1 (SHC1), transcript
            variant X5, mRNA.
ACCESSION   XM_032606261
VERSION     XM_032606261.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3089
                     /gene="SHC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 11 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740554"
     CDS             159..1580
                     /gene="SHC1"
                     /codon_start=1
                     /product="SHC-transforming protein 1 isoform X4"
                     /protein_id="XP_032462152.1"
                     /db_xref="GeneID:116740554"
                     /translation="MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDK
                     VMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRKPC
                     SRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDT
                     AEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDR
                     MAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGVPQGAARPTPPSAQT
                     PSHLGATLPVGQPVGGDPEARKQMLPPPPCPGRELFDDPSYVNVQNLDKARQAGSGAG
                     PPNPAINGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAEALL
                     QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHM
                     DNHLPIISAGSELCLQQPVERKL"
     misc_feature    264..779
                     /gene="SHC1"
                     /note="Shc-like phosphotyrosine-binding (PTB) domain;
                     Region: PTB_Shc; cd01209"
                     /db_xref="CDD:269920"
     misc_feature    order(354..365,378..380,603..629,663..665,681..683,
                     720..722,729..734,738..743,750..755,762..773,777..779)
                     /gene="SHC1"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    order(492..494,504..506,573..575)
                     /gene="SHC1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    1266..1577
                     /gene="SHC1"
                     /note="Src homology 2 (SH2) domain found in SH2 adaptor
                     protein C (SHC); Region: SH2_SHC; cd09925"
                     /db_xref="CDD:198179"
     misc_feature    order(1311..1313,1359..1361,1365..1367,1380..1382,
                     1395..1397,1422..1430)
                     /gene="SHC1"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198179"
     misc_feature    order(1392..1394,1425..1427,1431..1433,1437..1439,
                     1452..1460,1473..1475,1491..1493,1524..1532)
                     /gene="SHC1"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198179"
ORIGIN      
        1 ggtcaggggt tagtgaggcc ggaagtgagt gaaataaagt ttctccaggg aggccgggcc
       61 cggggagaaa gttggagcgg cgaccttaga aggcagtggc gtgatccgga accaaatcgg
      121 cccgcggtgc ggtgcggaga ctccatgaag ccctggacat gaacaagctg agtggaggcg
      181 gcgggcgcag gactcgggtg gaagggggcc agctgggggg cgaggagtgg acccgccacg
      241 ggagctttgt caataagccc acgcggggct ggctgcatcc caacgacaaa gtcatgggac
      301 ccggggtttc ctacttggtt cggtacatgg gctgtgtgga ggtcctgcag tcaatgcgtg
      361 ccctggactt caacacccgg acgcaggtca ccagggaggc catcagtctg gtgtgtgacg
      421 ctgtgccggg tgccaagggg gcaacaagga ggagaaagcc ctgtagccgt ccactcagct
      481 ccatcctggg gaggagtaac ctgaaatttg ctggaatgcc aatcactctc accgtctcca
      541 ccagcagcct caacctcatg gccgcagact gcaaacagat catcgccaac caccacatgc
      601 aatccatctc gtttgcgtct ggcggggacc cggacacagc cgagtatgtc gcctatgttg
      661 ccaaagaccc ggtgaatcag agagcctgcc acatcctgga gtgtcccgaa gggcttgctc
      721 aggacgtcat cagcaccatt ggccaggcct tcgagttgcg tttcaaacaa tacctcagga
      781 acccgcccaa gctggtcacc ccccatgaca ggatggctgg ctttgatggc tcagcttggg
      841 atgaggagga agaagagcca cctgaccatc agtactataa tgacttccct gggaaggaac
      901 cccctcttgg gggggtggtg gacatgagac ttcgggaagg agtcccccag ggggctgctc
      961 gacccactcc acccagtgcc cagaccccta gccacctggg agccacgctg ccagtggggc
     1021 agcctgttgg aggagaccca gaagcccgca aacagatgct gcccccgcca ccctgcccag
     1081 gcagagagct ctttgatgat ccctcctatg tcaatgtcca gaacctagac aaggcacggc
     1141 aagcaggcag tggggccggg ccccccaatc ctgccatcaa tggcagcgcg ccccgagacc
     1201 tctttgacat gaagcccttt gaagatgccc tgcgggtgcc tccacctccc cagttggtgg
     1261 ccatggctga gcagctccga ggggagccct ggtttcacgg gaagctgagc cggcgggagg
     1321 ccgaggcact gctacagctc aacggggact tcctggtgcg ggaaagcacg accacgcctg
     1381 gccagtatgt gctcactggc ctgcagagtg ggcagcccaa gcacctgcta ctggtggacc
     1441 ctgagggtgt ggttcggaca aaggatcacc gctttgagag tgtcagtcac ctcatcagct
     1501 accacatgga caatcacttg cccatcatct ctgcgggcag cgaactgtgt ctccagcaac
     1561 ctgtggagcg gaagctgtga tctgtcccag tgctctctcc tagaagatgc cctgtgaccc
     1621 cttccaccct attgcccaat tctcgggacc tcacttggga gtgttctgtg ggcttggcct
     1681 tgtgtaggga tgggggtagt gtggacattg ggttcagcgt ccagctgagt gagagggttt
     1741 gagtcaggag ccaggggtag agtcctgctt ttccccaaac ctcaccaaag tattaatgta
     1801 cagagtggcc cccttccctg ggcctttcct gtgccaactt gataccccct tccccaaggt
     1861 gggtgctgga ggcctgggca gtatgcctcc ttgtaatgga aaatgtcctg tggtgatagg
     1921 cccagtggag caatcaccct tccagggaag gggaatgaat cacaccctta gtctacccct
     1981 gggctcaggg taccccagac ccctctcaac aaccctccct cccagcgttt aaactttgtg
     2041 cctttgacca tctgctaggt ctgaagatat tttatgcaaa gagttcttgg ggccctgaag
     2101 tcaagcatgg gggtgctgac accttggctt ctgggacccc atcctctcct tgctcagtac
     2161 cccctcccct ttaggttggg tgaacagagg caggagtggc agctgtcccc tctccaccgg
     2221 gatatgcagc ccttagagat tgccttaaag ccccctccca gccagtgggg agatggacct
     2281 gcctcttgct cagtgcctct tgggtggggc ccctcacccc agggggtcta tatatacatt
     2341 tggcaagtcc atcccccccc atgttgcatg catgttatac tctagagcca aagtacaacc
     2401 cttcctcctg tagcctctgc cctgcctccc cctgctgggg tggtgggggg atgactgaag
     2461 tgtcatccta ggtggatttt gtggaggtgg gaacaggggc actgagactc taaagcagta
     2521 gacaatcctc agataccatc ggtagatttg gaactgcgtt ttttatttta tatgcatata
     2581 ttttagggct gtagatttac tttactaatt tgttttccat agcttattcc tgagcacaaa
     2641 atgataataa tccatttata catcaccttt ttgacttttc aaagcccttt tacaactatt
     2701 ggcattttcc tcaccctggc ctttgccggt agcgttatct tttctgagag accagaggcc
     2761 gagtgtgagc taggactaga gaaacttgga cctcccaccg cgaggctggg aggcagaagt
     2821 ttggctgaat ggctgttagt ttcacacggg gcgggcgggg gcttggggac acttaaaacc
     2881 tgcagttatt gaatcccttc tccaggccgg gtcctgcctc aacgacagag gagccggtcc
     2941 tgctctgtca ttaggccttg tggataaggg agcgtggact atctaaatcc tcacctccct
     3001 tttttttctt ttctttttgt ttggatgttt tcacgggtct cacttatacc aaagggaaag
     3061 aatcttcatt aaagtccata tttcttcta
//
LOCUS       XM_032606270            2913 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC adaptor protein 1 (SHC1), transcript
            variant X6, mRNA.
ACCESSION   XM_032606270
VERSION     XM_032606270.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2913
                     /gene="SHC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740554"
     CDS             148..1404
                     /gene="SHC1"
                     /codon_start=1
                     /product="SHC-transforming protein 1 isoform X5"
                     /protein_id="XP_032462161.1"
                     /db_xref="GeneID:116740554"
                     /translation="MGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRK
                     PCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDP
                     DTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPH
                     DRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGVPQGAARPTPPSA
                     QTPSHLGATLPVGQPVGGDPEARKQMLPPPPCPAGRELFDDPSYVNVQNLDKARQAGS
                     GAGPPNPAINGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAE
                     ALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLIS
                     YHMDNHLPIISAGSELCLQQPVERKL"
     misc_feature    148..600
                     /gene="SHC1"
                     /note="Shc-like phosphotyrosine-binding (PTB) domain;
                     Region: PTB_Shc; cd01209"
                     /db_xref="CDD:269920"
     misc_feature    order(175..186,199..201,424..450,484..486,502..504,
                     541..543,550..555,559..564,571..576,583..594,598..600)
                     /gene="SHC1"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    order(313..315,325..327,394..396)
                     /gene="SHC1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    1090..1401
                     /gene="SHC1"
                     /note="Src homology 2 (SH2) domain found in SH2 adaptor
                     protein C (SHC); Region: SH2_SHC; cd09925"
                     /db_xref="CDD:198179"
     misc_feature    order(1135..1137,1183..1185,1189..1191,1204..1206,
                     1219..1221,1246..1254)
                     /gene="SHC1"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198179"
     misc_feature    order(1216..1218,1249..1251,1255..1257,1261..1263,
                     1276..1284,1297..1299,1315..1317,1348..1356)
                     /gene="SHC1"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198179"
ORIGIN      
        1 agtgaggccg gaagtgagtg aaataaagtt tctccaggga ggccgggccc ggggagaaag
       61 ttggagcggc gaccttagaa ggcagtggcg tgatccggaa ccaaatcggc ccgcggtgcg
      121 gtgcggagac tccatgaagc cctgtacatg ggctgtgtgg aggtcctgca gtcaatgcgt
      181 gccctggact tcaacacccg gacgcaggtc accagggagg ccatcagtct ggtgtgtgac
      241 gctgtgccgg gtgccaaggg ggcaacaagg aggagaaagc cctgtagccg tccactcagc
      301 tccatcctgg ggaggagtaa cctgaaattt gctggaatgc caatcactct caccgtctcc
      361 accagcagcc tcaacctcat ggccgcagac tgcaaacaga tcatcgccaa ccaccacatg
      421 caatccatct cgtttgcgtc tggcggggac ccggacacag ccgagtatgt cgcctatgtt
      481 gccaaagacc cggtgaatca gagagcctgc cacatcctgg agtgtcccga agggcttgct
      541 caggacgtca tcagcaccat tggccaggcc ttcgagttgc gtttcaaaca atacctcagg
      601 aacccgccca agctggtcac cccccatgac aggatggctg gctttgatgg ctcagcttgg
      661 gatgaggagg aagaagagcc acctgaccat cagtactata atgacttccc tgggaaggaa
      721 ccccctcttg ggggggtggt ggacatgaga cttcgggaag gagtccccca gggggctgct
      781 cgacccactc cacccagtgc ccagacccct agccacctgg gagccacgct gccagtgggg
      841 cagcctgttg gaggagaccc agaagcccgc aaacagatgc tgcccccgcc accctgccca
      901 gcaggcagag agctctttga tgatccctcc tatgtcaatg tccagaacct agacaaggca
      961 cggcaagcag gcagtggggc cgggcccccc aatcctgcca tcaatggcag cgcgccccga
     1021 gacctctttg acatgaagcc ctttgaagat gccctgcggg tgcctccacc tccccagttg
     1081 gtggccatgg ctgagcagct ccgaggggag ccctggtttc acgggaagct gagccggcgg
     1141 gaggccgagg cactgctaca gctcaacggg gacttcctgg tgcgggaaag cacgaccacg
     1201 cctggccagt atgtgctcac tggcctgcag agtgggcagc ccaagcacct gctactggtg
     1261 gaccctgagg gtgtggttcg gacaaaggat caccgctttg agagtgtcag tcacctcatc
     1321 agctaccaca tggacaatca cttgcccatc atctctgcgg gcagcgaact gtgtctccag
     1381 caacctgtgg agcggaagct gtgatctgtc ccagtgctct ctcctagaag atgccctgtg
     1441 accccttcca ccctattgcc caattctcgg gacctcactt gggagtgttc tgtgggcttg
     1501 gccttgtgta gggatggggg tagtgtggac attgggttca gcgtccagct gagtgagagg
     1561 gtttgagtca ggagccaggg gtagagtcct gcttttcccc aaacctcacc aaagtattaa
     1621 tgtacagagt ggcccccttc cctgggcctt tcctgtgcca acttgatacc cccttcccca
     1681 aggtgggtgc tggaggcctg ggcagtatgc ctccttgtaa tggaaaatgt cctgtggtga
     1741 taggcccagt ggagcaatca cccttccagg gaaggggaat gaatcacacc cttagtctac
     1801 ccctgggctc agggtacccc agacccctct caacaaccct ccctcccagc gtttaaactt
     1861 tgtgcctttg accatctgct aggtctgaag atattttatg caaagagttc ttggggccct
     1921 gaagtcaagc atgggggtgc tgacaccttg gcttctggga ccccatcctc tccttgctca
     1981 gtaccccctc ccctttaggt tgggtgaaca gaggcaggag tggcagctgt cccctctcca
     2041 ccgggatatg cagcccttag agattgcctt aaagccccct cccagccagt ggggagatgg
     2101 acctgcctct tgctcagtgc ctcttgggtg gggcccctca ccccaggggg tctatatata
     2161 catttggcaa gtccatcccc ccccatgttg catgcatgtt atactctaga gccaaagtac
     2221 aacccttcct cctgtagcct ctgccctgcc tccccctgct ggggtggtgg ggggatgact
     2281 gaagtgtcat cctaggtgga ttttgtggag gtgggaacag gggcactgag actctaaagc
     2341 agtagacaat cctcagatac catcggtaga tttggaactg cgttttttat tttatatgca
     2401 tatattttag ggctgtagat ttactttact aatttgtttt ccatagctta ttcctgagca
     2461 caaaatgata ataatccatt tatacatcac ctttttgact tttcaaagcc cttttacaac
     2521 tattggcatt ttcctcaccc tggcctttgc cggtagcgtt atcttttctg agagaccaga
     2581 ggccgagtgt gagctaggac tagagaaact tggacctccc accgcgaggc tgggaggcag
     2641 aagtttggct gaatggctgt tagtttcaca cggggcgggc gggggcttgg ggacacttaa
     2701 aacctgcagt tattgaatcc cttctccagg ccgggtcctg cctcaacgac agaggagccg
     2761 gtcctgctct gtcattaggc cttgtggata agggagcgtg gactatctaa atcctcacct
     2821 cccttttttt tcttttcttt ttgtttggat gttttcacgg gtctcactta taccaaaggg
     2881 aaagaatctt cattaaagtc catatttctt cta
//
LOCUS       XM_032606278            3070 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC adaptor protein 1 (SHC1), transcript
            variant X7, mRNA.
ACCESSION   XM_032606278
VERSION     XM_032606278.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3070
                     /gene="SHC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740554"
     CDS             308..1561
                     /gene="SHC1"
                     /codon_start=1
                     /product="SHC-transforming protein 1 isoform X6"
                     /protein_id="XP_032462169.1"
                     /db_xref="GeneID:116740554"
                     /translation="MGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRK
                     PCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDP
                     DTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPH
                     DRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGVPQGAARPTPPSA
                     QTPSHLGATLPVGQPVGGDPEARKQMLPPPPCPGRELFDDPSYVNVQNLDKARQAGSG
                     AGPPNPAINGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAEA
                     LLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISY
                     HMDNHLPIISAGSELCLQQPVERKL"
     misc_feature    308..760
                     /gene="SHC1"
                     /note="Shc-like phosphotyrosine-binding (PTB) domain;
                     Region: PTB_Shc; cd01209"
                     /db_xref="CDD:269920"
     misc_feature    order(335..346,359..361,584..610,644..646,662..664,
                     701..703,710..715,719..724,731..736,743..754,758..760)
                     /gene="SHC1"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    order(473..475,485..487,554..556)
                     /gene="SHC1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    1247..1558
                     /gene="SHC1"
                     /note="Src homology 2 (SH2) domain found in SH2 adaptor
                     protein C (SHC); Region: SH2_SHC; cd09925"
                     /db_xref="CDD:198179"
     misc_feature    order(1292..1294,1340..1342,1346..1348,1361..1363,
                     1376..1378,1403..1411)
                     /gene="SHC1"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198179"
     misc_feature    order(1373..1375,1406..1408,1412..1414,1418..1420,
                     1433..1441,1454..1456,1472..1474,1505..1513)
                     /gene="SHC1"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198179"
ORIGIN      
        1 ggtcaggggt tagtgaggcc ggaagtgagt gaaataaagt ttctccaggg aggccgggcc
       61 cggggagaaa gttggagcgg cgaccttaga aggcagtggc gtgatccgga accaaatcgg
      121 cccgcggtgc ggtgcggaga ctccatgaag ccctgcttgc ttcgctgtgg aaagggggac
      181 agaagagtgc ttggcatggg ccgctgctcc ttggcatggt aggcgccatg catggagaac
      241 aagcctccac cagcctgtcc tctgctccag ctcctgcctg gtggctccct gatgcaccac
      301 ccagtacatg ggctgtgtgg aggtcctgca gtcaatgcgt gccctggact tcaacacccg
      361 gacgcaggtc accagggagg ccatcagtct ggtgtgtgac gctgtgccgg gtgccaaggg
      421 ggcaacaagg aggagaaagc cctgtagccg tccactcagc tccatcctgg ggaggagtaa
      481 cctgaaattt gctggaatgc caatcactct caccgtctcc accagcagcc tcaacctcat
      541 ggccgcagac tgcaaacaga tcatcgccaa ccaccacatg caatccatct cgtttgcgtc
      601 tggcggggac ccggacacag ccgagtatgt cgcctatgtt gccaaagacc cggtgaatca
      661 gagagcctgc cacatcctgg agtgtcccga agggcttgct caggacgtca tcagcaccat
      721 tggccaggcc ttcgagttgc gtttcaaaca atacctcagg aacccgccca agctggtcac
      781 cccccatgac aggatggctg gctttgatgg ctcagcttgg gatgaggagg aagaagagcc
      841 acctgaccat cagtactata atgacttccc tgggaaggaa ccccctcttg ggggggtggt
      901 ggacatgaga cttcgggaag gagtccccca gggggctgct cgacccactc cacccagtgc
      961 ccagacccct agccacctgg gagccacgct gccagtgggg cagcctgttg gaggagaccc
     1021 agaagcccgc aaacagatgc tgcccccgcc accctgccca ggcagagagc tctttgatga
     1081 tccctcctat gtcaatgtcc agaacctaga caaggcacgg caagcaggca gtggggccgg
     1141 gccccccaat cctgccatca atggcagcgc gccccgagac ctctttgaca tgaagccctt
     1201 tgaagatgcc ctgcgggtgc ctccacctcc ccagttggtg gccatggctg agcagctccg
     1261 aggggagccc tggtttcacg ggaagctgag ccggcgggag gccgaggcac tgctacagct
     1321 caacggggac ttcctggtgc gggaaagcac gaccacgcct ggccagtatg tgctcactgg
     1381 cctgcagagt gggcagccca agcacctgct actggtggac cctgagggtg tggttcggac
     1441 aaaggatcac cgctttgaga gtgtcagtca cctcatcagc taccacatgg acaatcactt
     1501 gcccatcatc tctgcgggca gcgaactgtg tctccagcaa cctgtggagc ggaagctgtg
     1561 atctgtccca gtgctctctc ctagaagatg ccctgtgacc ccttccaccc tattgcccaa
     1621 ttctcgggac ctcacttggg agtgttctgt gggcttggcc ttgtgtaggg atgggggtag
     1681 tgtggacatt gggttcagcg tccagctgag tgagagggtt tgagtcagga gccaggggta
     1741 gagtcctgct tttccccaaa cctcaccaaa gtattaatgt acagagtggc ccccttccct
     1801 gggcctttcc tgtgccaact tgataccccc ttccccaagg tgggtgctgg aggcctgggc
     1861 agtatgcctc cttgtaatgg aaaatgtcct gtggtgatag gcccagtgga gcaatcaccc
     1921 ttccagggaa ggggaatgaa tcacaccctt agtctacccc tgggctcagg gtaccccaga
     1981 cccctctcaa caaccctccc tcccagcgtt taaactttgt gcctttgacc atctgctagg
     2041 tctgaagata ttttatgcaa agagttcttg gggccctgaa gtcaagcatg ggggtgctga
     2101 caccttggct tctgggaccc catcctctcc ttgctcagta ccccctcccc tttaggttgg
     2161 gtgaacagag gcaggagtgg cagctgtccc ctctccaccg ggatatgcag cccttagaga
     2221 ttgccttaaa gccccctccc agccagtggg gagatggacc tgcctcttgc tcagtgcctc
     2281 ttgggtgggg cccctcaccc cagggggtct atatatacat ttggcaagtc catccccccc
     2341 catgttgcat gcatgttata ctctagagcc aaagtacaac ccttcctcct gtagcctctg
     2401 ccctgcctcc ccctgctggg gtggtggggg gatgactgaa gtgtcatcct aggtggattt
     2461 tgtggaggtg ggaacagggg cactgagact ctaaagcagt agacaatcct cagataccat
     2521 cggtagattt ggaactgcgt tttttatttt atatgcatat attttagggc tgtagattta
     2581 ctttactaat ttgttttcca tagcttattc ctgagcacaa aatgataata atccatttat
     2641 acatcacctt tttgactttt caaagccctt ttacaactat tggcattttc ctcaccctgg
     2701 cctttgccgg tagcgttatc ttttctgaga gaccagaggc cgagtgtgag ctaggactag
     2761 agaaacttgg acctcccacc gcgaggctgg gaggcagaag tttggctgaa tggctgttag
     2821 tttcacacgg ggcgggcggg ggcttgggga cacttaaaac ctgcagttat tgaatccctt
     2881 ctccaggccg ggtcctgcct caacgacaga ggagccggtc ctgctctgtc attaggcctt
     2941 gtggataagg gagcgtggac tatctaaatc ctcacctccc ttttttttct tttctttttg
     3001 tttggatgtt ttcacgggtc tcacttatac caaagggaaa gaatcttcat taaagtccat
     3061 atttcttcta
//
LOCUS       XM_032606289            2910 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC adaptor protein 1 (SHC1), transcript
            variant X8, mRNA.
ACCESSION   XM_032606289
VERSION     XM_032606289.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2910
                     /gene="SHC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740554"
     CDS             148..1401
                     /gene="SHC1"
                     /codon_start=1
                     /product="SHC-transforming protein 1 isoform X6"
                     /protein_id="XP_032462180.1"
                     /db_xref="GeneID:116740554"
                     /translation="MGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRK
                     PCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDP
                     DTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPH
                     DRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGVPQGAARPTPPSA
                     QTPSHLGATLPVGQPVGGDPEARKQMLPPPPCPGRELFDDPSYVNVQNLDKARQAGSG
                     AGPPNPAINGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAEA
                     LLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISY
                     HMDNHLPIISAGSELCLQQPVERKL"
     misc_feature    148..600
                     /gene="SHC1"
                     /note="Shc-like phosphotyrosine-binding (PTB) domain;
                     Region: PTB_Shc; cd01209"
                     /db_xref="CDD:269920"
     misc_feature    order(175..186,199..201,424..450,484..486,502..504,
                     541..543,550..555,559..564,571..576,583..594,598..600)
                     /gene="SHC1"
                     /note="phosphopeptide binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    order(313..315,325..327,394..396)
                     /gene="SHC1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269920"
     misc_feature    1087..1398
                     /gene="SHC1"
                     /note="Src homology 2 (SH2) domain found in SH2 adaptor
                     protein C (SHC); Region: SH2_SHC; cd09925"
                     /db_xref="CDD:198179"
     misc_feature    order(1132..1134,1180..1182,1186..1188,1201..1203,
                     1216..1218,1243..1251)
                     /gene="SHC1"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198179"
     misc_feature    order(1213..1215,1246..1248,1252..1254,1258..1260,
                     1273..1281,1294..1296,1312..1314,1345..1353)
                     /gene="SHC1"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198179"
ORIGIN      
        1 agtgaggccg gaagtgagtg aaataaagtt tctccaggga ggccgggccc ggggagaaag
       61 ttggagcggc gaccttagaa ggcagtggcg tgatccggaa ccaaatcggc ccgcggtgcg
      121 gtgcggagac tccatgaagc cctgtacatg ggctgtgtgg aggtcctgca gtcaatgcgt
      181 gccctggact tcaacacccg gacgcaggtc accagggagg ccatcagtct ggtgtgtgac
      241 gctgtgccgg gtgccaaggg ggcaacaagg aggagaaagc cctgtagccg tccactcagc
      301 tccatcctgg ggaggagtaa cctgaaattt gctggaatgc caatcactct caccgtctcc
      361 accagcagcc tcaacctcat ggccgcagac tgcaaacaga tcatcgccaa ccaccacatg
      421 caatccatct cgtttgcgtc tggcggggac ccggacacag ccgagtatgt cgcctatgtt
      481 gccaaagacc cggtgaatca gagagcctgc cacatcctgg agtgtcccga agggcttgct
      541 caggacgtca tcagcaccat tggccaggcc ttcgagttgc gtttcaaaca atacctcagg
      601 aacccgccca agctggtcac cccccatgac aggatggctg gctttgatgg ctcagcttgg
      661 gatgaggagg aagaagagcc acctgaccat cagtactata atgacttccc tgggaaggaa
      721 ccccctcttg ggggggtggt ggacatgaga cttcgggaag gagtccccca gggggctgct
      781 cgacccactc cacccagtgc ccagacccct agccacctgg gagccacgct gccagtgggg
      841 cagcctgttg gaggagaccc agaagcccgc aaacagatgc tgcccccgcc accctgccca
      901 ggcagagagc tctttgatga tccctcctat gtcaatgtcc agaacctaga caaggcacgg
      961 caagcaggca gtggggccgg gccccccaat cctgccatca atggcagcgc gccccgagac
     1021 ctctttgaca tgaagccctt tgaagatgcc ctgcgggtgc ctccacctcc ccagttggtg
     1081 gccatggctg agcagctccg aggggagccc tggtttcacg ggaagctgag ccggcgggag
     1141 gccgaggcac tgctacagct caacggggac ttcctggtgc gggaaagcac gaccacgcct
     1201 ggccagtatg tgctcactgg cctgcagagt gggcagccca agcacctgct actggtggac
     1261 cctgagggtg tggttcggac aaaggatcac cgctttgaga gtgtcagtca cctcatcagc
     1321 taccacatgg acaatcactt gcccatcatc tctgcgggca gcgaactgtg tctccagcaa
     1381 cctgtggagc ggaagctgtg atctgtccca gtgctctctc ctagaagatg ccctgtgacc
     1441 ccttccaccc tattgcccaa ttctcgggac ctcacttggg agtgttctgt gggcttggcc
     1501 ttgtgtaggg atgggggtag tgtggacatt gggttcagcg tccagctgag tgagagggtt
     1561 tgagtcagga gccaggggta gagtcctgct tttccccaaa cctcaccaaa gtattaatgt
     1621 acagagtggc ccccttccct gggcctttcc tgtgccaact tgataccccc ttccccaagg
     1681 tgggtgctgg aggcctgggc agtatgcctc cttgtaatgg aaaatgtcct gtggtgatag
     1741 gcccagtgga gcaatcaccc ttccagggaa ggggaatgaa tcacaccctt agtctacccc
     1801 tgggctcagg gtaccccaga cccctctcaa caaccctccc tcccagcgtt taaactttgt
     1861 gcctttgacc atctgctagg tctgaagata ttttatgcaa agagttcttg gggccctgaa
     1921 gtcaagcatg ggggtgctga caccttggct tctgggaccc catcctctcc ttgctcagta
     1981 ccccctcccc tttaggttgg gtgaacagag gcaggagtgg cagctgtccc ctctccaccg
     2041 ggatatgcag cccttagaga ttgccttaaa gccccctccc agccagtggg gagatggacc
     2101 tgcctcttgc tcagtgcctc ttgggtgggg cccctcaccc cagggggtct atatatacat
     2161 ttggcaagtc catccccccc catgttgcat gcatgttata ctctagagcc aaagtacaac
     2221 ccttcctcct gtagcctctg ccctgcctcc ccctgctggg gtggtggggg gatgactgaa
     2281 gtgtcatcct aggtggattt tgtggaggtg ggaacagggg cactgagact ctaaagcagt
     2341 agacaatcct cagataccat cggtagattt ggaactgcgt tttttatttt atatgcatat
     2401 attttagggc tgtagattta ctttactaat ttgttttcca tagcttattc ctgagcacaa
     2461 aatgataata atccatttat acatcacctt tttgactttt caaagccctt ttacaactat
     2521 tggcattttc ctcaccctgg cctttgccgg tagcgttatc ttttctgaga gaccagaggc
     2581 cgagtgtgag ctaggactag agaaacttgg acctcccacc gcgaggctgg gaggcagaag
     2641 tttggctgaa tggctgttag tttcacacgg ggcgggcggg ggcttgggga cacttaaaac
     2701 ctgcagttat tgaatccctt ctccaggccg ggtcctgcct caacgacaga ggagccggtc
     2761 ctgctctgtc attaggcctt gtggataagg gagcgtggac tatctaaatc ctcacctccc
     2821 ttttttttct tttctttttg tttggatgtt ttcacgggtc tcacttatac caaagggaaa
     2881 gaatcttcat taaagtccat atttcttcta
//
LOCUS       XM_032606301            3170 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pygopus family PHD finger 2 (PYGO2),
            mRNA.
ACCESSION   XM_032606301
VERSION     XM_032606301.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3170
                     /gene="PYGO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 3 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740579"
     CDS             205..1425
                     /gene="PYGO2"
                     /codon_start=1
                     /product="pygopus homolog 2"
                     /protein_id="XP_032462192.1"
                     /db_xref="GeneID:116740579"
                     /translation="MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKK
                     RRKSNTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGGAAPPFLGSPVPFG
                     GFRVQGGMAGQVPPGYGTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNM
                     NFPSQPFNQPLGQNFSPPGGQMMSGPVGGFGPMISPTMGQPPRGELGPPSLPQRFAQP
                     GAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNTPAPTAFPQEPH
                     SGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKTSAGSGPQPPPGLVYPCGACR
                     SEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEIQSVY
                     IREGMGQLVAANDG"
     misc_feature    <214..1170
                     /gene="PYGO2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1189..1350
                     /gene="PYGO2"
                     /note="PHD finger found in pygopus homolog 2 (PYGO2);
                     Region: PHD_PYGO2; cd15636"
                     /db_xref="CDD:277106"
     misc_feature    order(1213..1215,1219..1221,1225..1227,1231..1239,
                     1243..1245,1261..1263,1300..1302,1309..1314,1318..1320,
                     1327..1329)
                     /gene="PYGO2"
                     /note="H3K4me binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277106"
     misc_feature    order(1279..1290,1294..1299,1306..1311,1324..1338)
                     /gene="PYGO2"
                     /note="BCL9 HD1 interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277106"
ORIGIN      
        1 ccggttcctg tggctgcggc cgcgggcggg cggtaaggct gggcgagagt gcagttggcc
       61 cccgggctcg ccgaccccgc ctcgccgcac ctccggcttg ctgcagcgcg ggggcctgcg
      121 ccgccccagc ctccccttcc gggccatggt gcaaccccag ggcgcgtccg tcccccgccg
      181 ccgctgaccc cggtccccca ctccatggcc gcctcggcgc cgcccccacc ggacaagctg
      241 gagggaggtg gcggccccgc accgccccct gcgccaccca gcaccgggag gaaacagggc
      301 aaggccggtc tgcaaatgaa gagcccagaa aagaagcgaa ggaagtcaaa tactcagggc
      361 cctgcatact cacatctgac ggagtttgcg ccacccccga ctcccatggt cgatcacctg
      421 gtcgcatcca acccttttga ggatgacttc ggagccccta aggtgggggg cgcagcccct
      481 ccattcctgg gcagtcctgt cccctttggg ggcttccgtg tacagggggg catggcaggc
      541 caggtacccc caggctatgg cactgggggt ggaggaggcc cccagcctct tcgtcgacag
      601 cccccccctt tccctcccaa ccccatgggt cctgctttca acatgccccc acagggccct
      661 ggctaccctc ccccaggcaa catgaacttt cccagccaac ccttcaacca gcctctgggt
      721 caaaacttta gcccgcctgg tgggcagatg atgtcaggcc ccgtgggggg atttggcccc
      781 atgatctcac ccaccatggg acagcctccc agaggggagc tgggcccccc ttctctccct
      841 caacgctttg cccagccagg ggcacctttt ggtccttctc ctctccagag acctggtcag
      901 ggcctcccca gcttgccccc caacacaagt cccttccctg gtccggaccc tggctttcct
      961 ggccctggtg gtgaggatgg ggggaagccc ttaaatacac ctgctcccac tgcttttccc
     1021 caggagcccc actcaggctc cccggctgct gctgttaatg gaaatcagcc cagttttccc
     1081 ccaaacagca gtgggcgggg tgggggcacc ccagatgcca atagcctggc accccctggc
     1141 aagacaagtg cgggctcagg gccccagcct cccccaggcc tggtgtatcc atgtggtgcc
     1201 tgtcggagtg aggtgaacga cgaccaagat gccattctgt gtgaggcttc ctgccagaag
     1261 tggttccacc gcgagtgcac gggcatgact gagagcgcct atgggttgct gaccactgag
     1321 gcctctgctg tctgggcctg cgatctctgc ctcaagacca aggagatcca gtctgtctac
     1381 atccgcgagg gcatggggca gctggtggct gctaacgatg ggtgatgctg gcgaggtgcc
     1441 caggaagtgc atacgttcct ccctgctctt ccagggtggt tgttttcctg tctggctctt
     1501 ggtccttgtt tccactggct tcccatcccc atggggcaga aacacaatgt ctcctggggg
     1561 cagaaaagga actgagacgg gcaggcagaa gagcctggct tgctcacttt tctggaaact
     1621 tacgtgttga gatctacaga ggtccaggaa accaaagccc tgccaagcag agccattttt
     1681 ggtggctgtc tctggaggcc taggggtgcg actgcaagag aaaagaggct ggaggaagat
     1741 ctgaagggca ggggtgtccc ctctacagat gatggatgcc cccaacacct gtgcctaaca
     1801 ctcctatcta gccccctagc cttaggtttt ggagtccagt attaaaggtt tctggccaga
     1861 ggagttgggg gtctcttccc atctctgcag tagccctttc acgggtgctg ggaaacagct
     1921 ttagagaata aatggagatt ttcctctttt cttaccttcc ccttgcctcc tccaagacct
     1981 acccaactcc tcccccctca gagaaccaaa tagcttgaag aagcaggaga gtacgtggct
     2041 atggcagttt gttggtgatt tggggcttca agacagtagg taagagatgc tgtcaggaca
     2101 tatcttcctc ataccaaagt cactggtcct ttctcagact ctcttgtgct ttttccctaa
     2161 tgacaatatt tttgctaaaa attgggatat gtggtctgac agagcagaat atttgatgtt
     2221 tggactgtcc tggaagcctg gactctggct gtacaccccc ccatctgttg cacattattc
     2281 ccagcgctgg tcttcaactt ttggcgccct tacttccctg cttccctggc ttgattgaag
     2341 gaaagcttga agaggcgcag agcccttata cctcattttt tctcctgatg aaaggatccc
     2401 tgtccctgcc tgtgggtggg gaggtggcag gacccttatt gccatggtac taaaatgcaa
     2461 tccagagcct ggatgttttt tgtttctctc tttccctgct attctttata tcttctccgg
     2521 cctggtgatc tagctgttct cattcctctc agccagggtc ctgcactggg ctttgttttt
     2581 attttatttt gtaagcactg cctgccagag atgggccagc ggccttagca ggagcccctc
     2641 acagctgctg tctcttcctt acagctcctg cacacattcc tcagtggggt ggggaaggca
     2701 ggcttggggt gtggccctga gaggagctgg tgttcccctg cccccacttc tcccgggacc
     2761 ctagggtgtg aagagaagac aaaggtatac tgcagaactc ttgcctgccc aggtgcagca
     2821 tgcatcctct gaggctgtga gaaagaaggg agaggcctct gggcctctct ccagtgttcc
     2881 ctgccgtgga acagcagaga tggcagcccc cccccccccc cccccactgc tgagctttgt
     2941 gttgtgtttg tggttctgtt tgcccctctt ttatcggttg ctatttttgt ggtctccccc
     3001 atctctgcat ttggtaagat ggctcttgcg ggggggtggg ggggtgggcg tgtcagctca
     3061 gtccctctct ccctctcagt ccactgcttt ttggaaggaa gtgggggtgg cagagacgtg
     3121 gtggggaaag ttttgtatgg ttgggttaat aaaatgactt ggaaaatcca
//
LOCUS       XM_032606312             774 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CDC28 protein kinase regulatory subunit
            1B (CKS1B), mRNA.
ACCESSION   XM_032606312
VERSION     XM_032606312.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..774
                     /gene="CKS1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740585"
     CDS             69..308
                     /gene="CKS1B"
                     /codon_start=1
                     /product="cyclin-dependent kinases regulatory subunit 1"
                     /protein_id="XP_032462203.1"
                     /db_xref="GeneID:116740585"
                     /translation="MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWR
                     NLGVQQSQGWVHYMIHEPEPHILLFRRPLPKKPKK"
     misc_feature    84..287
                     /gene="CKS1B"
                     /note="Cyclin-dependent kinase regulatory subunit; Region:
                     CKS; pfam01111"
                     /db_xref="CDD:460068"
ORIGIN      
        1 agcgcgtgct gctgggagtt ctttggaggt tggcggtgcg gggctgacgg tcgtcaggca
       61 gggtgattat gtcgcacaag cagatttact attcggacaa atacgacgac gaggagttcg
      121 agtaccggca tgtgatgttg cccaaggaca tagccaagct ggtccctaaa acccatttga
      181 tgtctgaatc tgaatggagg aatcttggtg ttcagcagag tcagggatgg gtccattata
      241 tgatccatga accagaacct cacatcttgc tgttccggcg gccactgccc aagaagccaa
      301 agaaatgaag ctggggagcc acttttcagc ctcatgcttt atacagctgt cttcatttgc
      361 taacatcttt ctgatgacat tattatgttg ccttcctgtt tctcactttg atatttaaag
      421 gatgttcagt acactgtttg aacgtgttgg agactgcttt gcttcttgag cagaaccaac
      481 aggaccatgg cccagccaga caactgctct ttgggttgca gcctcagcta agtgtgaccc
      541 ccaaaaccag tgtgagctct gtatcccgca gaacacactt ggcagatgga ggaagcatct
      601 aagaataaga ccgtggctgt tacagggatt gtgtaaactt cctgtttttt ttttctgcca
      661 ggtgttgtat gtatggtgat ttatgtttca atgtgttgga aactttccat tttattcaag
      721 aaatctgttc catgttaaaa agccttgatt aaagaggaag tttttataat ctaa
//
LOCUS       XM_032606325             876 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor superfamily member 9
            (TNFRSF9), mRNA.
ACCESSION   XM_032606325
VERSION     XM_032606325.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..876
                     /gene="TNFRSF9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 79% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740590"
     CDS             94..876
                     /gene="TNFRSF9"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 9"
                     /protein_id="XP_032462216.1"
                     /db_xref="GeneID:116740590"
                     /translation="MQDILMANFYYNIVATVLLVMNFERTRSLQDFCSNCSAGTFCGK
                     NKHELCTPCPSNSFSSTSGQKACDVCRKCEGVFRTKKACSSTSNAECECVSGFYCLGE
                     GCNMCEEDCKQGQELTKEGCKDCSFGTFNDREHGDCKPWTDCSLDGKSVLVNGTKESD
                     VVCGPATADFSPGASSTVTPAPGGEPGHTTRIIIFFLALTSTAVLFLASFVVLRFSVV
                     KQGRKKLLYIFKQPFMRPVQTAQEEDACSCRFPEEEEGVCEL"
     misc_feature    175..588
                     /gene="TNFRSF9"
                     /note="Tumor necrosis factor receptor superfamily member 9
                     (TNFRSF9), also known as CD137; Region: TNFRSF9; cd13410"
                     /db_xref="CDD:276915"
     misc_feature    175..243
                     /gene="TNFRSF9"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276915"
     misc_feature    250..366
                     /gene="TNFRSF9"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276915"
     misc_feature    370..459
                     /gene="TNFRSF9"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276915"
     misc_feature    466..582
                     /gene="TNFRSF9"
                     /note="CRD4 [structural motif]; Region: CRD4"
                     /db_xref="CDD:276915"
ORIGIN      
        1 gttctccacc aaccctgcga tctcaagagt ggtacatgtg aaaccagcta ctttgattaa
       61 aattcttttg gaatctgctt ggctaatacg tctatgcaag atatcctcat ggcaaatttc
      121 tattacaaca tagtggctac tgtgctgttg gtcatgaatt tcgagaggac gagatcattg
      181 caggatttct gcagtaactg ttcagcgggt actttctgtg ggaaaaacaa gcatgagctt
      241 tgcactcctt gtccttcaaa tagtttctcc agcacaagtg gacaaaaagc ctgtgacgta
      301 tgcaggaagt gtgaaggtgt tttcaggacc aagaaagcat gttcctccac cagcaatgca
      361 gagtgcgagt gtgtgtcggg attctactgc ctgggagaag gatgtaacat gtgtgaagag
      421 gactgtaaac aaggtcaaga attaacaaaa gagggttgta aagactgttc ctttgggaca
      481 tttaatgatc gggaacatgg tgactgtaaa ccttggacag actgttcttt ggatgggaag
      541 tctgtccttg tgaatgggac gaaggaaagc gatgtggtat gcggaccagc aacagctgac
      601 ttctctccag gtgcatcctc caccgtcacg cctgcccctg ggggagagcc aggtcacacc
      661 acccggatca ttatcttctt tcttgcactg acatcgactg cagtgctgtt cttggcgtcc
      721 ttcgtggtgc tccgtttctc tgtggttaaa cagggcagaa agaagcttct gtatatattc
      781 aaacaaccat ttatgagacc agtacaaaca gcccaagagg aagatgcctg cagttgccgg
      841 tttccagaag aagaggaagg agtgtgtgaa ctgtga
//
LOCUS       XM_032606338            2991 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus catsper channel auxiliary subunit epsilon
            (CATSPERE), mRNA.
ACCESSION   XM_032606338
VERSION     XM_032606338.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2991
                     /gene="CATSPERE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 68% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740595"
     CDS             103..2958
                     /gene="CATSPERE"
                     /codon_start=1
                     /product="cation channel sperm-associated protein subunit
                     epsilon"
                     /protein_id="XP_032462229.1"
                     /db_xref="GeneID:116740595"
                     /translation="MSASGVAVLLSWLSCCGSALWRYSSNSPNYHIFSTRSTIKLEYE
                     GTLFSEWSVPGTCSIKNKRSPKTELRCSSPGIQIIKPIVTGPDLEEERYLSVDSSHTC
                     FLWYYKVINFTNNLTEVIIWIYDPENADPSELLWNANEPSLNSIILSKQLATLGQKPA
                     IYTVLRRKVYFPHRKMKNGTWHISLPMTEYDVLKEIRGNQVAFQDCFIADIFFLLTFS
                     LLTIPEIPEFLPISSPQGSQLMADWTACVPSFVVVVADMETFQTNDSFRTWTRIRVPP
                     NILTDDERHSVSDVTLSQDGIFFLINGILYLKNYNAFKGLGSNVNLPDGGIIGITSRK
                     WCWINYLLKNKGRRSSMAIWTENEVYLGYALLKFVKIITTEELKEVLNMSSAATLTIH
                     NVEYTGHPLELALLLNYCITCNIIKTIYLVIYNEDTKQWVFQDFALDVTTDTFLIPNF
                     IYSALPELILWDKHRIYYYYHNFTDTGVLQTPTEFGNLSRLSHNSTIHDVFMDYYGNI
                     VVKMENNVMFYFKINIKDAVKLHLWTNSTIKSLISLNTSGKMYLIHVFENGTIHPQEY
                     PLKLEAQSIAFKTKEKCPYMAFHNDIFRVFYLLDKGQNLSVWAQIVYPENIGLYIIVE
                     SYGPKILEEKNQIHYEIASGYCTKTMTVTFSENINYEAVDDYFKLQYQNTGLLLVHVR
                     PSEHAKTCPVSQKVFQISVGCDANKFIAVKGFDKKECLQHDFFYIIEKSYLRDRPPKH
                     LRVKYNWEKYGCPLRVDFREKFHPVVQLYNDSGYVEDVEVNFIVWEIHGRDDYSFNNT
                     MKKSGCLHEAQTWKSMTELNKRLPLEEAWGPENYKHCFSYAIGKPGDLNQPYEIINKS
                     NRNHLVWPLDHSGMYVFRVKILDPNYSFCNLTTIFAIETFGVIPSPSAYMVAAFLFLL
                     MLLFCSILVLSYFHYLRIYKEYIYEPLHKSERKQKNN"
     misc_feature    <2197..2808
                     /gene="CATSPERE"
                     /note="Cation channel sperm-associated protein subunit
                     delta; Region: CATSPERD; pfam15020"
                     /db_xref="CDD:464451"
ORIGIN      
        1 accccgggtt ggcaccgagc acctccagaa accggcgtcc gcgggagcgc gccgactggc
       61 gggcgcgctg ggctgttggg tggttgcgaa ccgccgccag tcatgtcagc ctcaggagtg
      121 gcggtgctgc tgtcttggtt gagctgttgc ggctcggctc tgtggaggta ttccagtaac
      181 agcccaaact accacatttt tagtaccaga agtactatta agttagagta tgaaggaaca
      241 ttattttctg agtggagtgt gccgggaact tgttctataa aaaataaaag atcacccaag
      301 acagaactac gttgttcttc tcctggtatt cagattataa aaccaattgt tacgggccca
      361 gatttagaag aagaacgcta tttatctgtg gacagttctc atacttgctt tctgtggtat
      421 tataaggtta taaatttcac taacaattta accgaggtta tcatatggat atacgatcca
      481 gaaaacgcag accctagtga attgctatgg aatgcaaatg aaccttccct aaattccata
      541 atacttagca aacagctggc cactttggga cagaagcctg ccatatatac agttctgagg
      601 agaaaagttt attttccaca tagaaaaatg aagaatggga cctggcatat ctcgctaccg
      661 atgacagaat atgatgtgct aaaggagatt agaggaaatc aagtggcttt tcaagattgc
      721 tttattgcag atattttttt cctgctgact ttttctttgt taacaatacc tgagattcct
      781 gagtttttac caatatcttc accacagggt agtcagttaa tggcagactg gactgcttgt
      841 gttccttcat ttgttgttgt ggtagctgat atggagacct ttcagacaaa tgattcattc
      901 cgtacttgga ccagaatcag agtgcctcca aacattctga ctgatgatga aagacacagt
      961 gtgtctgatg tgaccctatc acaggatgga atattttttt taataaatgg tatcctttac
     1021 ttaaaaaatt ataatgcatt caaaggactg ggaagcaatg taaatcttcc tgatggtgga
     1081 attattggca ttacatcaag aaaatggtgt tggatcaact atttattgaa gaataaagga
     1141 agaagaagca gcatggcaat ctggacagaa aatgaggttt atcttggata tgctttgctt
     1201 aaatttgtta aaataataac tactgaagaa ctgaaagaag ttctaaatat gtcatcagct
     1261 gctactctga ctatacacaa tgttgagtat acaggacacc ctttggaact tgccttgtta
     1321 ctaaattact gcattacatg taacatcatc aaaacgattt acctagtgat atacaatgaa
     1381 gatacaaaac agtgggtatt ccaagacttt gcattagatg tcactactga cactttttta
     1441 attccaaatt ttatatattc agcactgcca gaattaatac tatgggacaa acataggatc
     1501 tactattatt atcataattt cacagatact ggagttttac aaacacctac ggaatttgga
     1561 aatctatcaa gattatcaca taacagcact attcatgatg tttttatgga ttattatgga
     1621 aatattgtgg taaaaatgga aaataatgta atgttttatt tcaagattaa tattaaagat
     1681 gcagtaaagc tgcatttatg gacaaatagc acaataaaat cattaatttc cttgaataca
     1741 tctggtaaaa tgtatctcat acatgttttt gaaaatggca caatacatcc acaggaatat
     1801 cccttaaaac tggaagcaca aagtatagct ttcaaaacaa aagaaaaatg cccctacatg
     1861 gcatttcata atgatatttt tcgtgttttt tatcttttgg acaagggaca aaacctgtca
     1921 gtttgggctc aaatagtcta tccagaaaat attgggctgt atattattgt ggaatcatat
     1981 ggcccaaaaa tattggaaga gaaaaatcag attcactatg aaattgcctc aggatactgc
     2041 actaaaacca tgacagtaac attttctgag aatataaatt atgaggcagt agatgattat
     2101 ttcaagttgc aataccagaa cacaggtctt ctgcttgttc acgttagacc tagtgaacat
     2161 gcaaaaacgt gtccagtctc ccaaaaggtg ttccaaatat ctgttggctg tgatgctaat
     2221 aaattcattg ctgttaaagg atttgataaa aaagaatgcc ttcagcatga ttttttttac
     2281 atcattgaaa agtcatatct gagggatcga ccacctaaac acttgagagt aaaatataat
     2341 tgggaaaaat atggctgccc actgagagtt gatttcagag aaaagtttca ccctgtggtt
     2401 caactataca atgacagtgg ctatgttgaa gatgttgaag taaatttcat agtgtgggaa
     2461 atacatggca gggatgacta tagctttaac aacactatga agaagagtgg ctgtttgcac
     2521 gaagctcaga catggaagtc aatgactgag cttaacaagc gcctcccgtt agaagaagcc
     2581 tggggacctg agaactataa acactgtttt tcttatgcta ttggaaaacc aggagactta
     2641 aatcaaccat atgagattat caacaagtct aaccgtaacc atttagtttg gcccttggac
     2701 cattccggaa tgtatgtgtt tcgtgtgaag atcctggatc caaactatag tttctgtaac
     2761 ctcaccacta tatttgcaat agagaccttt ggagtgattc ccagtccaag tgcttacatg
     2821 gttgcagctt tcctctttct cctgatgcta ctgttctgca gtattcttgt tctgagctac
     2881 tttcactatt tgaggattta taaagaatat atttatgaac cactgcacaa atctgaaaga
     2941 aaacaaaaga ataattagaa aaatgaaagt ttatttacta tgaatatatg t
//
LOCUS       XM_032606350            3897 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tyrosine kinase with immunoglobulin like
            and EGF like domains 1 (TIE1), mRNA.
ACCESSION   XM_032606350
VERSION     XM_032606350.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3897
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3897
                     /gene="TIE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 25 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740602"
     CDS             86..3505
                     /gene="TIE1"
                     /codon_start=1
                     /product="tyrosine-protein kinase receptor Tie-1"
                     /protein_id="XP_032462241.1"
                     /db_xref="GeneID:116740602"
                     /translation="MVWLGTPLLLPIVFLASHVGAAVDLTLLADLRLTEPQRFFLTCV
                     SGEAGAGRGSDAWGSPLLLEKDDRIVRTPRPWQPLHLTRNGSRQVTLRGFSQPSDLVG
                     VFSCVGGAGARRTRVLYVHNSPGAHLLPDKVTHTVNKGDTAVLSAWVRKEKQTDVIWK
                     SNGSYFYTLDWHEAQEGRFLLQLPNVQPSSSGIYSATYLEASPLGSAFFRLIVRGCEA
                     GHWGQDCTKECPGCLHGGVCHDQDGECVCPPGFTGTRCEQACREGRFGQSCQEQCPGT
                     SGCRGLTFCLPDPYGCSCGSGWRGSQCQEACAPGHFGADCHLQCQCQNGGTCDRFSGC
                     VCPSGWHGVHCEKSDRIPQILDMVSELEFNLETTPRINCAAAGNPFPVRGSVELRKPD
                     GTVLLSTKAIVEPDRTTAEFEVPRLALGDSGLWECRVSTSGGQDSRRFRVNVKVPPVP
                     LTAPRLLAKQSRQLVVSPLVSFSGDGPIASVRLHYRPQDSTMAWSTIVVDPSENVTLM
                     NLRPKTGYSVRVQLSRPGEGGEGAWGPPTLMTTDCPEPLLQPWLEGWHVEGPDRLRVS
                     WSLPSVPGPLVGDGFLLRLWDGARGQERRENVSSPQARTALLTGLTPGTHYQLDVRLY
                     HCTLLGPASPAARVLLPPSGPPAPRHLHAQALSDSEIQLVWQRPEAPAGPISKYIVEV
                     QVAEGSGDPLWMDVDRPEETSTVVRGLNASTRYLFRVRASVQGPGDWSDMVEESTLSN
                     GLQSEGPVQEVQAAEEGLDQQLVLAVVGSVSATCLTILAALLTLACIRRSCLHRRRTF
                     TYQSGSGEETILQFSSGTLTLTRRPKPQPEPLNYPVLEWEDITFEDLIGEGNFGQVIR
                     AMIKKDGLKMNAAIKMLKEYASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYL
                     YIAIEYAPYGNLLDFLRKSRVLETDPAFAREHGTASTLSSRQLLRFASDAANGMQYLS
                     EKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSV
                     YTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRMEQPRNCDDEVYELMR
                     QCWRDRPYERPPFAQIALQLGRMLEARKAYVNMSLFENFTYAGIDATAEEA"
     misc_feature    473..718
                     /gene="TIE1"
                     /note="Immunoglobulin domain; Region: ig; pfam00047"
                     /db_xref="CDD:395002"
     misc_feature    767..856
                     /gene="TIE1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1049..1120
                     /gene="TIE1"
                     /note="EGF-like domain; Region: EGF_2; pfam07974"
                     /db_xref="CDD:400365"
     misc_feature    1136..1411
                     /gene="TIE1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1190..1204
                     /gene="TIE1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1238..1252
                     /gene="TIE1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1313..1327
                     /gene="TIE1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1355..1372
                     /gene="TIE1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1394..1405
                     /gene="TIE1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    order(1427..1429,1619..1621,1670..1672)
                     /gene="TIE1"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    1433..1696
                     /gene="TIE1"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    <1553..>2404
                     /gene="TIE1"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    order(1673..1678,1682..1687)
                     /gene="TIE1"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2018..2296
                     /gene="TIE1"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(2018..2020,2216..2218,2258..2260)
                     /gene="TIE1"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(2261..2266,2270..2275)
                     /gene="TIE1"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    2594..3484
                     /gene="TIE1"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Tie1; Region: PTKc_Tie1; cd05089"
                     /db_xref="CDD:270671"
     misc_feature    order(2621..2635,2645..2647,2690..2692,2696..2698,
                     2747..2749,2759..2761,2768..2770,2789..2791,2837..2848,
                     2855..2860,3011..3013,3017..3019,3023..3025,3035..3040,
                     3044..3046,3071..3082,3122..3136,3161..3163,3263..3265)
                     /gene="TIE1"
                     /note="active site"
                     /db_xref="CDD:270671"
     misc_feature    order(2621..2626,2630..2635,2645..2647,2690..2692,
                     2696..2698,2747..2749,2759..2761,2789..2791,2837..2848,
                     2855..2860,3035..3040,3044..3046,3077..3079)
                     /gene="TIE1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270671"
     misc_feature    order(3023..3025,3035..3037,3122..3136,3161..3163,
                     3263..3265)
                     /gene="TIE1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270671"
     misc_feature    3074..3142
                     /gene="TIE1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270671"
ORIGIN      
        1 ctgacagcac aggctgagca gccggaccca gagtgactga ccgtgggccc cgcttgtccc
       61 ggctggcctg gtcagcctct ggattatggt ctggctgggg acccctttgc tgctccccat
      121 cgtcttcctg gcttctcatg ttggcgctgc ggtggacctg acgctgctgg ccgacctgcg
      181 cctgaccgag ccccagcgct tcttcctgac ctgcgtgtcc ggggaggcgg gggcgggcag
      241 gggctcggac gcctgggggt ccccgctgct gctggaaaag gacgaccgca ttgtgcgcac
      301 gccccggccc tggcagcccc tgcacctgac ccgcaatggc tcgcgccagg tgacgctgcg
      361 cggcttctcg cagccctcgg acctggtggg cgtcttctcc tgcgtgggcg gcgcgggggc
      421 gcggcgcacg cgcgtcctct acgtgcacaa cagcccagga gcccacctgc tcccggacaa
      481 ggtcacacac acggtgaata agggcgacac ggcagtactt tccgcgtggg tgcgcaagga
      541 gaagcagaca gatgtgatct ggaagagcaa cggatcctac ttctacaccc tggactggca
      601 tgaggcccag gaagggcggt ttttgctgca gctcccaaac gtgcagccat cgtcaagcgg
      661 catctacagt gccacctacc tggaagccag cccactgggc agcgccttct ttcgactcat
      721 cgtgcggggt tgtgaggctg ggcactgggg acaggactgt accaaggaat gcccgggctg
      781 cctgcatgga ggtgtctgcc acgaccagga cggcgagtgt gtgtgccccc ctggattcac
      841 tgggacccgc tgtgagcaag cctgcagaga gggccgtttt gggcagagct gccaggaaca
      901 gtgcccaggc acatcaggct gccgaggcct caccttctgc ctcccggacc cctatggctg
      961 ttcttgtgga tctggctgga gaggaagcca gtgccaggaa gcctgtgccc caggtcattt
     1021 tggggctgat tgccacctcc agtgccagtg tcagaacggc ggcacttgtg accgcttcag
     1081 cggctgcgtc tgcccctccg ggtggcatgg ggtgcactgt gagaagtcag accggatccc
     1141 ccagatcctg gacatggttt cagaactgga gttcaactta gagacgacac cccggatcaa
     1201 ctgtgccgcc gcggggaacc ccttcccagt ccggggcagc gtggagctcc gcaagccgga
     1261 cggcacggtc ctcctgtcca ccaaggccat tgtggagcca gataggacca cagccgagtt
     1321 cgaggtgccc cgcttggctc ttggggacag tggactctgg gagtgccgcg tgtccacgtc
     1381 tggtggccaa gacagccgac gcttcagggt caacgtcaaa gtgcccccgg tgcccctgac
     1441 tgcccctcgg ctcctggcca agcagagccg tcagctcgtg gtctccccgc tggtctcctt
     1501 ctccggggac gggcccatcg cctctgtacg gctgcactac cggccccagg acagcaccat
     1561 ggcctggtcc accatcgtgg tggaccccag tgagaacgtg acgttaatga acctgaggcc
     1621 gaagacagga tacagtgtcc gcgtgcagct gagccggcca ggggaagggg gggagggggc
     1681 ctgggggcct cccaccctca tgaccacaga ctgtcctgag ccattgttgc agccgtggct
     1741 ggagggctgg catgtggagg gccccgaccg gttgcgagtg agctggtcct taccctcggt
     1801 gccggggcca ctggtgggcg atggtttcct gctgcgcctg tgggacgggg cccggggaca
     1861 ggagcggcgg gagaacgtct cgtcccccca ggcccgcacc gccctcctga ccggactcac
     1921 acctggcacc cactaccagc tggacgtgcg gctctaccac tgtaccctcc tgggcccagc
     1981 ctcacccgct gctcgtgtgc ttctgccccc cagcgggccc ccagcccccc gacacctcca
     2041 cgcccaggcc ctttcagact ccgagatcca gctggtgtgg cagcgcccag aggctccagc
     2101 tgggcctata tccaagtaca ttgtggaggt gcaggtggct gagggctcag gagacccgct
     2161 gtggatggac gtggacaggc ccgaggagac gagcaccgtc gtccgcggcc tcaacgccag
     2221 cacgcgctac ctcttccgtg tgcgggccag cgtccagggc cccggtgact ggagcgacat
     2281 ggtagaagag tccaccctaa gcaacgggct gcagagcgag ggcccggtcc aagaggtcca
     2341 ggcagctgaa gagggtctgg atcaacagct ggtcctggct gtggtgggct ctgtgtctgc
     2401 cacctgcctc accatcctgg ctgctctctt aaccctggcg tgcatccgca gaagctgcct
     2461 gcatcgcaga cgcaccttca cctaccagtc gggatcgggt gaggagacca tcctgcagtt
     2521 cagctcgggc accttgacac tgacccggag gccaaaaccg cagcccgagc ccctgaatta
     2581 cccagtgctg gaatgggagg acatcacctt tgaggatctc attggggaag ggaacttcgg
     2641 ccaggtcatc cgggccatga tcaagaagga cggactcaag atgaatgcag ccatcaagat
     2701 gctgaaagag tatgcctctg aaaatgacca tcgtgacttc gcaggagaac tggaagttct
     2761 gtgcaaattg ggacatcacc ccaacatcat caacctcttg ggggcctgtg agaaccgagg
     2821 ttacttgtat atcgccattg aatatgcccc ctatgggaac ctgctcgatt tcctgaggaa
     2881 gagccgggtc ctggaaactg acccagcttt tgcccgagaa cacggaacgg cctccaccct
     2941 cagctcccgg cagctgctgc gttttgccag tgatgctgcc aatggcatgc agtacctgag
     3001 tgagaagcag ttcatccaca gggacctggc tgcccgaaac gtgctagtcg gagagaacct
     3061 ggcctccaag attgcggact tcggcctttc tcggggggag gaggtttatg tgaagaagac
     3121 gatggggcgt ctccccgtgc gctggatggc cattgagtct ctgaactaca gtgtctatac
     3181 taccaagagc gatgtttggt cctttggggt cctcctctgg gagatcgtga gccttggggg
     3241 caccccgtac tgcggcatga catgtgccga gctctatgag aagctgccgc agggctaccg
     3301 catggagcag cctcgcaact gtgatgatga agtgtacgag ctgatgcggc agtgctggcg
     3361 ggaccgtccg tacgagcgac ccccctttgc ccagatcgcg ctgcagctgg gccgcatgct
     3421 ggaagccagg aaggcctacg tgaacatgtc gctgtttgag aacttcacgt acgcgggcat
     3481 cgacgctaca gctgaggagg cctgagccgc catccggcca gaatgtggct ctgctggcca
     3541 gagcaacctc agctcttcaa cctgtgactt ctcatccttg tcgcctgagc tgcctcaagg
     3601 aattgttttt taacttaagg aagagaaaag gggatccagg gatggggtgg gcttagcggg
     3661 ggggcagtcc tcatcctttg cagttgctcc cagtgcctcc tgaattactg acagctaccc
     3721 tcacgtcctt cgttctagtt cagctgctcc acgtttgtgc tcttctgttc cctgccttcg
     3781 aacccctgct tcagcccctc cactcaggcc agcactcaca ccactaacat gccctgttca
     3841 gctgcgcccc actcccagcc ttgtaatcag gaaaaataaa tgctgtgaga agctcca
//
LOCUS       XM_032606364            2003 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL10 immune signaling adaptor (BCL10),
            mRNA.
ACCESSION   XM_032606364
VERSION     XM_032606364.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2003
                     /gene="BCL10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 4 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740606"
     CDS             278..979
                     /gene="BCL10"
                     /codon_start=1
                     /product="B-cell lymphoma/leukemia 10"
                     /protein_id="XP_032462255.1"
                     /db_xref="GeneID:116740606"
                     /translation="MEPTAPSLTEEDLTEVKKDALENLRVYLCEKIIAERHFDHLRAK
                     KILSREDTEEISCRTSSRKRAGKLLDYLQENPKGLDTLVESIRREKTQNFLIQKITDE
                     VLKLRNIKLEHLKGLKCSGCEPFPDGATNNLFRSNSDDSNFSEKLRASTVIYHPEGES
                     STAPFFSTDSSLNLPVLEVGRTENPTFSSTTLPRPGDPGAPPLPPELQLEEEGTCGNS
                     SEMFLPLRSRALLRQ"
     misc_feature    326..577
                     /gene="BCL10"
                     /note="Caspase activation and recruitment domain of B-cell
                     lymphoma 10; Region: CARD_BCL10; cd08810"
                     /db_xref="CDD:260072"
ORIGIN      
        1 gcctgggcct gggcctcttg gagagggaag gagcgggagc ccgagctccg cgtcgggaag
       61 cttaggtcgg ctgagccctc ggctctcaaa ggcagagccg gaagcgctac agtttgaccc
      121 acgagtccat ctgttttcga aggcgtagcc ctcttcctcc cgaccctctc cgcctccccc
      181 tctgctcctt catccggagg ccgaagcccc cagcctgggc ggggcggcgc agcctgagct
      241 cccggacccg gaagaagcgc catctcccgc gttcaccatg gagcccactg cgccgtccct
      301 caccgaggag gacctgactg aagtgaagaa ggacgcttta gaaaatttgc gtgtatacct
      361 gtgtgaaaaa atcatagctg agagacattt tgatcatcta cgtgcaaaaa aaatactcag
      421 tagagaagac actgaagaaa tttcttgtcg aacatcaagt agaaaaagag ctggaaaatt
      481 gttagactac ttacaagaaa accccaaagg actagatacc ctggttgaat ctattcggcg
      541 agaaaaaaca cagaacttcc tgatacagaa gattacagat gaagtgctaa aacttagaaa
      601 tataaaacta gaacatctga aaggactgaa atgtagcggc tgtgaacctt ttccagatgg
      661 agccacaaac aacctcttta gatcaaattc agatgacagt aatttctctg aaaaactgag
      721 agcatccacc gtcatatacc atccagaagg agaatccagc acagccccct ttttttctac
      781 tgattcttct ctgaatttgc ctgttctaga agtaggcaga actgaaaacc ccaccttctc
      841 ttcaactacg cttcctagac ctggggaccc tggggctcct cctttgccac cagagctgca
      901 gttagaagaa gaaggaactt gtggaaactc tagtgagatg tttcttccct taagatcacg
      961 tgctcttttg cggcaatgac agtttactgc attttaattt ttttaatgat gacaaaaaat
     1021 atttgaaagg atatgaatca tcttataaaa tgctataatg acttattaac atttgataca
     1081 tgtcttataa tgcaacgtaa acatactttg taaatagaat ttgttagaat aaaagaagta
     1141 tacttgtaga tagctaaagt aagtcttgtt gatcatgtac tcttcagtat tttctcttca
     1201 tttttgaggt aatttagtgt tttcactttt ttttatgttt taagactaat tttaatagag
     1261 aacatttctc tgtttgagaa tagagtctta ggctgggaac aatgtttctt ctctgtgcat
     1321 ttgtgctagt aagcttcaca gtctaatagt cctttccaac cattcaacag tacattttca
     1381 gaattaagct gttcctattc gtaataaagc caagcactgc tgggaaaact gccagctaca
     1441 gaaaagaatc tttttcccac tcagttgggc ttacagacac ttagaaagtc cccttctgat
     1501 tcagagaaat atctaatgga gtttgagcca cctatggtgc caatttgcca aaatacattt
     1561 cttattaatc ttactaatta atactacttt cttaagattt tcacactcct tgctttatca
     1621 ttttcattcc taaagaaaaa tcttggcata aacttcagtt attacatata atttaatgag
     1681 attttaaaaa tactttttct gtactttttg ttccctttta atgaggacca ctgtacagtt
     1741 gaaataatta gaacaaaatg gtttttatgt gtatatatgt gacaattctg tttttagtac
     1801 tatttggaac aagcaggcca ttagctagat atgtcttttt gttctatgac aaagtttgac
     1861 taattttaca aatttataaa tcttctttca ttgttttcat taaactatat ctatttctag
     1921 atatctgtct catatatatt tccactactt gcaaaaagca gagatggaaa tatgctatta
     1981 agaataaatg tttttaagtt gta
//
LOCUS       XM_032606373            3222 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TOR signaling pathway regulator (TIPRL),
            transcript variant X1, mRNA.
ACCESSION   XM_032606373
VERSION     XM_032606373.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3222
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3222
                     /gene="TIPRL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 7
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740616"
     CDS             181..999
                     /gene="TIPRL"
                     /codon_start=1
                     /product="TIP41-like protein isoform X1"
                     /protein_id="XP_032462264.1"
                     /db_xref="GeneID:116740616"
                     /translation="MMIHGFQSSHQDFSFGPWKLTASKTHIMKSADVEKLADELHMPS
                     LPEMMFGDNVLRIQHGSGFGIEFNATDALRCVNNYQGMLKVACAEEWQESRTEGEHSK
                     EVIKPYDWTYTTDYKGTLLGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDEL
                     HDHGVSSLSVKIRVMPSSFFLLLRFFLRIDGVLIRMNDTRLYHEADKTYMLREYTSRE
                     SKIANLMHVSPSLFTEPNEISQYLPIKEAVCEKLIFPERIDPNPGDSKECTPVE"
     misc_feature    328..834
                     /gene="TIPRL"
                     /note="TIP41-like family; Region: TIP41; pfam04176"
                     /db_xref="CDD:461208"
ORIGIN      
        1 aaaggagggc ctgcgtccgg gtaggccggc agggggcggg gtggggccgg gcatggtaac
       61 ggctcggaag ccgagggggc tgggttgggg ggaggcggag gcaccggtgt aggtagccgc
      121 tgccgctgcc gccgctgctc cagcctgttc cgtgtggccc acgcgggccc cgctgcggcc
      181 atgatgatcc acggcttcca gagtagccac caggacttct cctttgggcc ctggaagctg
      241 acggcatcca agacccacat catgaagtca gcggatgtgg agaagttagc tgatgaattg
      301 catatgccat ctctccctga aatgatgttt ggagacaacg ttttaagaat ccagcatggc
      361 tctggctttg ggattgagtt caatgctaca gatgcattaa gatgtgtgaa caactaccaa
      421 ggaatgctta aagtagcctg cgctgaagag tggcaggaaa gcaggacgga gggtgagcac
      481 tctaaggagg ttattaagcc gtatgactgg acctatacaa cagattataa gggaacgtta
      541 cttggagaat cacttaagct aaaggttgta cctacaacag atcatataga tacagagaaa
      601 ttgaaagcca gggaacagat taagtttttt gaagaagttc tcctgtttga ggatgaactt
      661 cacgatcatg gagtttcaag cctgagtgtg aaaattagag taatgccttc tagctttttc
      721 ttgctgttgc ggtttttctt gagaattgat ggggtgctta ttaggatgaa tgacacaaga
      781 ctttaccatg aggctgacaa gacctacatg ttacgagaat atacatcacg agagagcaaa
      841 attgctaatt taatgcatgt ttcaccttcc ctcttcacgg aacctaatga aatatcacag
      901 tatttgccga taaaggaggc agtttgtgag aagctaatat ttccagaaag aattgatcct
      961 aaccctggag actcaaaaga atgtacacct gtggaataga atttattaca acatatactg
     1021 accgtggaat ccgactggag accttggggc tatttggagg gggtattttt attatgagaa
     1081 ttaattgcct tgtctatgtg cagattttct gtagccttaa aggaaaaata aataaataaa
     1141 agagtgtcgc aggcagtttc cactcaactg ctgttgtact ctctgtcttc aaattcatat
     1201 tccagaaatt tatatcttct ggagttaaat tcagatttct aaattgtcac aaagtggggt
     1261 ctcaccagta gggggtgatg tgtgtatctc tcagaagcag tggccataac ctgtatctat
     1321 catgaaacac tatcttctac cacgaggaag ttactttaaa tcagtgaatc gtaacacctt
     1381 gtgaccttca tacgattcct aattgttcac gttgatgtag tggctcttta ccttgggttt
     1441 tttgatgttt attcacactt ctggagagtc atgacttgcc tcctaggaaa ttgatctcaa
     1501 atgatctgta cccagaaatt aaaaaaaaaa ataccctcct aaattttaat tggcttttga
     1561 agtttaaaga aagtttcaga catagaaaca aataaactag gtttttggag aacttaaggt
     1621 gttatgtcca tggaaacaca caatcatggt ttgccactga caggatgtca gagctgtctc
     1681 tcctccatct ttaggtgctt tttcttatgt gtggttctat ttgtactgac gttttttact
     1741 tccagcttcc acgcaccctc agagtgaata aatcttttgg atattgaatt tgatattggt
     1801 cctaaaaagt ttgaagtgtt aatatggatt gttttaagca aaaattacat cagcctctga
     1861 agcaaccaga ttaattttct gcttaaaata tttgaagggt agctgtggag gaggaagggg
     1921 cttattttaa aatctgaaag ccagtttttc cttttttaaa ttcatgtttt tgggaattcc
     1981 ctggcagtcc aatggttagg actccacgct ttcactgcca agggcctggg ttcagtccct
     2041 ggtcaaggac ctaagatcca gcaagccgtg cagcatggcc aaaaaaaaaa aaaaagattc
     2101 atgtttttaa cattacaggg gatccaataa agtgtaatta attagtacaa gatctaggta
     2161 gtacagaaag tttacaaaag taaatttgaa atccatttgg ttattttgat ggtgaccctt
     2221 taaacatttt atattctttt ctgcctttta aaatggtgtc cataaagtag caagtggtta
     2281 taaagcacca agtaagaaat tactttaaat ggatttaaaa aaatatttaa agggcagggg
     2341 aaaagaatta cccccttttt ttcttgtttg aaacagctat tgtacatatt tccacttgat
     2401 acataaatca ttaaagaaga atatttaatt gtaagtatta gcaaaactct tcaggtatta
     2461 gcctgaagat aaattttagt gaaacaaata cagttggata ttcatcatta ctcagactct
     2521 ggtgtgttgt tgtgtatatt gtttttttag ctaattttat tagctaaatt tggtcgcaaa
     2581 tgatttgggt atttgtttgc tctctgctac atcaccttca aggtatagga aatcaggatt
     2641 ttgttggctt tgagaaaata catggcatgt tcactgtatg ttaagtatac cggtacttaa
     2701 tgttttccct taggacagag aagtgtatat attgtactcc gctttctgtt tattttattt
     2761 gccatgcaga tttgaacaga acagactcct tagtcataca aattattaaa aaatgaaaaa
     2821 ctgtaataat atttattagt tgaattagag gtttctgggc agcatcatat tacacatata
     2881 tttttaactt gattcagatg tcttagtccc tgagtcagtc ttaaatgact tattttgagg
     2941 atccattgtt aaaaattgta gaatagactg ttttatagaa gaaggtggga ggtggatagg
     3001 atgagtgtac ttttgaaagc ttcattagtt tattcctgtg gagaatgcca agaaaactta
     3061 tatttgccca ttgctaaaca agacatatac cattttatat ttatttgttc caagtgtctt
     3121 tttgtaagag gagaataaac aataagtaat tacccatctg tgttttgcta tttcatttac
     3181 tgtcgttttt cttgaagctt aattaaaaaa tggtttggta ta
//
LOCUS       XM_032606380            3191 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TOR signaling pathway regulator (TIPRL),
            transcript variant X2, mRNA.
ACCESSION   XM_032606380
VERSION     XM_032606380.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3191
                     /gene="TIPRL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740616"
     CDS             225..968
                     /gene="TIPRL"
                     /codon_start=1
                     /product="TIP41-like protein isoform X2"
                     /protein_id="XP_032462271.1"
                     /db_xref="GeneID:116740616"
                     /translation="MIVAVDFPLPLADELHMPSLPEMMFGDNVLRIQHGSGFGIEFNA
                     TDALRCVNNYQGMLKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTLLGESLKL
                     KVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSLSVKIRVMPSSFFLLLRF
                     FLRIDGVLIRMNDTRLYHEADKTYMLREYTSRESKIANLMHVSPSLFTEPNEISQYLP
                     IKEAVCEKLIFPERIDPNPGDSKECTPVE"
     misc_feature    297..803
                     /gene="TIPRL"
                     /note="TIP41-like family; Region: TIP41; pfam04176"
                     /db_xref="CDD:461208"
ORIGIN      
        1 ctgggattcg ggcgcgagcc ggggagctgg gcctgggcgg gaggcagggc gagctcggcg
       61 gagccccagc ccttctctgg ggggcggagg ctcgcgttcc tccggacggg acctttgaat
      121 tgacaacacc aggaaatatt cctgtctcca cctcctgtct ttcgtttcgg gccgccaggc
      181 gctgccttcg tgaaattgtc actccgcctg gatttgagca gagcatgatt gttgcggtgg
      241 actttcccct cccgttagct gatgaattgc atatgccatc tctccctgaa atgatgtttg
      301 gagacaacgt tttaagaatc cagcatggct ctggctttgg gattgagttc aatgctacag
      361 atgcattaag atgtgtgaac aactaccaag gaatgcttaa agtagcctgc gctgaagagt
      421 ggcaggaaag caggacggag ggtgagcact ctaaggaggt tattaagccg tatgactgga
      481 cctatacaac agattataag ggaacgttac ttggagaatc acttaagcta aaggttgtac
      541 ctacaacaga tcatatagat acagagaaat tgaaagccag ggaacagatt aagttttttg
      601 aagaagttct cctgtttgag gatgaacttc acgatcatgg agtttcaagc ctgagtgtga
      661 aaattagagt aatgccttct agctttttct tgctgttgcg gtttttcttg agaattgatg
      721 gggtgcttat taggatgaat gacacaagac tttaccatga ggctgacaag acctacatgt
      781 tacgagaata tacatcacga gagagcaaaa ttgctaattt aatgcatgtt tcaccttccc
      841 tcttcacgga acctaatgaa atatcacagt atttgccgat aaaggaggca gtttgtgaga
      901 agctaatatt tccagaaaga attgatccta accctggaga ctcaaaagaa tgtacacctg
      961 tggaatagaa tttattacaa catatactga ccgtggaatc cgactggaga ccttggggct
     1021 atttggaggg ggtattttta ttatgagaat taattgcctt gtctatgtgc agattttctg
     1081 tagccttaaa ggaaaaataa ataaataaaa gagtgtcgca ggcagtttcc actcaactgc
     1141 tgttgtactc tctgtcttca aattcatatt ccagaaattt atatcttctg gagttaaatt
     1201 cagatttcta aattgtcaca aagtggggtc tcaccagtag ggggtgatgt gtgtatctct
     1261 cagaagcagt ggccataacc tgtatctatc atgaaacact atcttctacc acgaggaagt
     1321 tactttaaat cagtgaatcg taacaccttg tgaccttcat acgattccta attgttcacg
     1381 ttgatgtagt ggctctttac cttgggtttt ttgatgttta ttcacacttc tggagagtca
     1441 tgacttgcct cctaggaaat tgatctcaaa tgatctgtac ccagaaatta aaaaaaaaaa
     1501 taccctccta aattttaatt ggcttttgaa gtttaaagaa agtttcagac atagaaacaa
     1561 ataaactagg tttttggaga acttaaggtg ttatgtccat ggaaacacac aatcatggtt
     1621 tgccactgac aggatgtcag agctgtctct cctccatctt taggtgcttt ttcttatgtg
     1681 tggttctatt tgtactgacg ttttttactt ccagcttcca cgcaccctca gagtgaataa
     1741 atcttttgga tattgaattt gatattggtc ctaaaaagtt tgaagtgtta atatggattg
     1801 ttttaagcaa aaattacatc agcctctgaa gcaaccagat taattttctg cttaaaatat
     1861 ttgaagggta gctgtggagg aggaaggggc ttattttaaa atctgaaagc cagtttttcc
     1921 ttttttaaat tcatgttttt gggaattccc tggcagtcca atggttagga ctccacgctt
     1981 tcactgccaa gggcctgggt tcagtccctg gtcaaggacc taagatccag caagccgtgc
     2041 agcatggcca aaaaaaaaaa aaaagattca tgtttttaac attacagggg atccaataaa
     2101 gtgtaattaa ttagtacaag atctaggtag tacagaaagt ttacaaaagt aaatttgaaa
     2161 tccatttggt tattttgatg gtgacccttt aaacatttta tattcttttc tgccttttaa
     2221 aatggtgtcc ataaagtagc aagtggttat aaagcaccaa gtaagaaatt actttaaatg
     2281 gatttaaaaa aatatttaaa gggcagggga aaagaattac cccctttttt tcttgtttga
     2341 aacagctatt gtacatattt ccacttgata cataaatcat taaagaagaa tatttaattg
     2401 taagtattag caaaactctt caggtattag cctgaagata aattttagtg aaacaaatac
     2461 agttggatat tcatcattac tcagactctg gtgtgttgtt gtgtatattg tttttttagc
     2521 taattttatt agctaaattt ggtcgcaaat gatttgggta tttgtttgct ctctgctaca
     2581 tcaccttcaa ggtataggaa atcaggattt tgttggcttt gagaaaatac atggcatgtt
     2641 cactgtatgt taagtatacc ggtacttaat gttttccctt aggacagaga agtgtatata
     2701 ttgtactccg ctttctgttt attttatttg ccatgcagat ttgaacagaa cagactcctt
     2761 agtcatacaa attattaaaa aatgaaaaac tgtaataata tttattagtt gaattagagg
     2821 tttctgggca gcatcatatt acacatatat ttttaacttg attcagatgt cttagtccct
     2881 gagtcagtct taaatgactt attttgagga tccattgtta aaaattgtag aatagactgt
     2941 tttatagaag aaggtgggag gtggatagga tgagtgtact tttgaaagct tcattagttt
     3001 attcctgtgg agaatgccaa gaaaacttat atttgcccat tgctaaacaa gacatatacc
     3061 attttatatt tatttgttcc aagtgtcttt ttgtaagagg agaataaaca ataagtaatt
     3121 acccatctgt gttttgctat ttcatttact gtcgtttttc ttgaagctta attaaaaaat
     3181 ggtttggtat a
//
LOCUS       XM_032606385            4198 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 47 (WDR47), mRNA.
ACCESSION   XM_032606385
VERSION     XM_032606385.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-220               VOSU01000011.1     97198651-97198870   c
            221-387             VOSU01000011.1     97181791-97181957   c
            388-471             VOSU01000011.1     97178897-97178980   c
            472-556             VOSU01000011.1     97174987-97175071   c
            557-1359            VOSU01000011.1     97172592-97173394   c
            1360-1483           VOSU01000011.1     97168020-97168143   c
            1484-1662           VOSU01000011.1     97162277-97162455   c
            1663-1923           VOSU01000011.1     97158198-97158458   c
            1924-1999           VOSU01000011.1     97155327-97155402   c
            2000-2157           VOSU01000011.1     97153374-97153531   c
            2158-2263           VOSU01000011.1     97150182-97150287   c
            2264-2327           VOSU01000011.1     97150117-97150180   c
            2328-2356           VOSU01000011.1     97149314-97149342   c
            2357-2428           VOSU01000011.1     97149241-97149312   c
            2429-2498           VOSU01000011.1     97149169-97149238   c
            2499-2630           VOSU01000011.1     97148353-97148484   c
            2631-2849           VOSU01000011.1     97145288-97145506   c
            2850-4198           VOSU01000011.1     97142221-97143569   c
FEATURES             Location/Qualifiers
     source          1..4198
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4198
                     /gene="WDR47"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 4 bases in 3 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 94% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:116740625"
     CDS             230..2992
                     /gene="WDR47"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 4 bases in 3 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: WD repeat-containing
                     protein 47"
                     /protein_id="XP_032462276.1"
                     /db_xref="GeneID:116740625"
                     /translation="MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGL
                     FSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMS
                     AEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTA
                     RVHCFEEACVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGE
                     EITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPT
                     KAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDL
                     GNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERDTPVEAQRPISSEIL
                     GQSSVSEKEPANGAQNSGPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIY
                     QQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPALNQQCNGNK
                     GNGSNNSSITSFSTPSQDSSQRLPHDASDIHTSTPSNPGSINHTPFLEESPSCGNQIS
                     SEQSVIKPPLGDSSGNLSRSRGEEDDKTKKQFVCINTLEDTQAVRAVAFHPGGGLYAV
                     GSNSKTLRVCAYPEVIDPSAHDIPKQPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSN
                     DKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISGWSGDCNIYT
                     TDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFH
                     GTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAH
                     YLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVT
                     LWTYSG"
     misc_feature    266..349
                     /gene="WDR47"
                     /note="LisH-like dimerization domain; Region: LisH_TPL;
                     pfam17814"
                     /db_xref="CDD:375350"
     misc_feature    362..535
                     /gene="WDR47"
                     /note="C-terminal to LisH motif; Region: CTLH; smart00668"
                     /db_xref="CDD:128914"
     misc_feature    2048..2977
                     /gene="WDR47"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    2063..2209
                     /gene="WDR47"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2225..2350
                     /gene="WDR47"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2363..2488
                     /gene="WDR47"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2516..2620
                     /gene="WDR47"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2639..2743
                     /gene="WDR47"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2765..2884
                     /gene="WDR47"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2903..2977
                     /gene="WDR47"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 cggacggtcg ccggtccggg agggggagac gggaggaaag acagactgac gagctgatgg
       61 attgacgcgc gggcggctgg aggcaggacc gacgtcgagc ccagaccgcc gccctcacac
      121 tccctttcca gcccagagct cgccgcttgg gggccccgtc tccggcctct gcgccgcttt
      181 ctcctccgcg atttctccgg gctcgtcccg gagccctcag gttatcaaca tgacggctga
      241 agaaacagtg aatgtaaaag aggttgaaat cattaagcta attttagact tcttgaattc
      301 aaagaagctt cacattagta tgttggccct tgagaaggaa agtggagtca taaatggcct
      361 attttcagat gatatgcttt tcctgaggca gctaatcctt gatggtcaat gggatgaagt
      421 tcttcagttc attcagcctc tagaatgtat ggaaaaattt gacaaaaaaa ggtttcgtta
      481 tattatcctg aagcagaagt ttttagaagc tttatgtgtt aacaacgcaa tgtcagcaga
      541 agatgagccc cagcatctgg aatttaccat gcaagaagct gtgcaatgtt tacatgccct
      601 agaagagtac tgtccttcta aagatgatta cagcaagctc tgtttgcttt tgactttgcc
      661 tcgtctgacc aatcatgctg aatttaagga ctggaatccc agcactgcac gagttcactg
      721 ttttgaagag gcttgtgtca tggttgcaga attcatccct gctgatagga agctaagtga
      781 ggctggtttt aaagcaagta acaatcgttt atttcagctt gtaatgaagg gcctacttta
      841 tgaatgctgt gtagaatttt gtcaaagtaa agcaactgga gaagaaatta cagaaagtga
      901 agtactactt ggtatcgacc tcttatgtgg taatggttgt gatgatttgg atctgagttt
      961 attgtcatgg cttcagaatc tcccatcttc ggtcttctct tgtgctttcg aacagaaaat
     1021 gcttaatatt catgttgaca aacttctgaa acccacaaaa gctgcatatg ctgatctttt
     1081 gactcctctt atcagcaaac tttctcccta tccatcatct ccaatgagaa ggcctcaatc
     1141 agctgatgcc tatatgactc gctctctgaa tcctgcttta gatggcctca cttgtggact
     1201 aaccagtcat gataagagaa tttcagacct tggtaacaaa acttctccaa tgtcacactc
     1261 ctttgctaac ttccattatc caggggtaca aaacctcagt agaagtctca tgcttgagaa
     1321 tacagaatgt cacagtattt atgaagaatc ccctgaacgt gatacacctg ttgaggcaca
     1381 gcggcctatc agcagtgaaa tcctgggcca gagttcagtt tcagaaaaag agcctgcaaa
     1441 tggagcacag aattcaggac cagctaagca agaaaaaaat gagcttcgag attcaacaga
     1501 acaatttcaa gaatattata ggcaaagatt acgctatcaa cagcatttag aacagaagga
     1561 gcaacagcga cagatatacc aacagatgct gcttgaagga ggtgtgaatc aggaggatgg
     1621 tcctgatcag cagcagaatc ttaccgaaca attcctcaat aggtccattc aaaagctagg
     1681 tgaattaaat attggaatgg atagccttgg taatgaggta ccagcgctca accagcaatg
     1741 taatgggaac aaaggcaatg gatctaataa ttcttccatc actagttttt ctacaccatc
     1801 ccaagactct agtcagagat taccacatga tgcttcagat attcacacaa gcactcctag
     1861 taatcctgga tcaataaatc acacaccttt tcttgaggaa tcgccttctt gtggaaacca
     1921 aatctcatca gaacagtcgg tcattaagcc acctcttgga gattcttcag ggaatctgtc
     1981 aagatcaaga ggggaagagg atgacaaaac aaaaaagcag tttgtttgta ttaataccct
     2041 agaagacaca caagctgtta gagcagtggc ttttcatcca ggtggtggtc tatatgctgt
     2101 tggttcaaat tcaaaaactc tgagagtatg tgcctatcca gaagtaattg atccaagtgc
     2161 acatgacatc cctaagcagc cagtggtgcg ttttaaaagg aataaacatc acaaaggatc
     2221 catttactgt gtggcctgga gtccttgtgg acagttgtta gcgacaggat caaatgacaa
     2281 atacgtcaaa gtgctgccct tcaatgcaga gacttgtaat gcaacaggac cagatctgga
     2341 atttagtatg catgatggga caattagaga cttggcattt atggaaggcc cagaaagtgg
     2401 tggagctatt ttgataagtg gctggagcgg ggattgtaac atttatacaa ccgattgtca
     2461 aagaggacag ggcctccatg ctctgagtgg gcataccggg catattttag cgctttacac
     2521 ttggagcggc tggatgattg cgtctggttc ccaagataag actgttaggt tctgggatct
     2581 ccgtgtacca agttgtgttc gcgttgttgg cacaacattc catggaactg gcagtgcagt
     2641 ggcatctgta gctgtagatc ccagtggccg tctcttagcc acaggacaag aagattccag
     2701 ctgcatgtta tatgacataa gaggaggaag aatggtacaa agttaccacc ctcattccag
     2761 tgatgttcgc tctgttcgat tctctcctgg agctcactac ttgctaacag gatcctatga
     2821 tatgaaaata aaggtgacag acctacaagg agacctcact aaacagcttc ctatcatggt
     2881 ggtgggggaa cacaaggaca aagtcattca gtgcaggtgg cacacccagg atctttcctt
     2941 cttgtcgtcc tctgcagaca gaactgtaac cctctggaca tacagtggat agagtacagc
     3001 caatgtcagt ctatgcagtg agggcacaga cttaagacta ctgagttgtg aacattacaa
     3061 atttgaagaa catggactga cctggaaggt ggcttagcac aaggaggccc cttattacca
     3121 cgtatccctg tgataggagc tgttgggtgg tgttattctg cagtgctttc agtcttccat
     3181 gtgagctcgt gctgctgtga cctgctgtat gtagtcttgt tgccaaagtc tgcggaagag
     3241 ctcttatgtt gtcagtgtgc actctaagtc aaggtggccg atgtgtttac agtttagtat
     3301 taaatgcatt ccttggtctt cgcctaaatg acagttttat atacacattg aaactgaact
     3361 ataagcatat tattacatgt aatgcaacca agttctacac agatgaaaca tagatattca
     3421 gaaattactt ttgcttttct cacaatccca tgatattgta tcacttgtca gctagagata
     3481 agaattttat atgtctcccc agagttacat tgttgtttta actaaggatc actatggagt
     3541 ttaaaaatgg gtggaaaact gcttcttagt tcattatgtg gtataggcct tttctttttt
     3601 cttaaaccca gggatagaat tactcttttg tcacattatt ttgtttcagg cttaaaaggt
     3661 aaatgtgttt gctttataaa cttgttaatt tcaatttttt tgggtgcaac aagatacctc
     3721 ccttctgaac tgtactgtag gcagagcagc agcgttatgt gatgcaacac ttgatggtac
     3781 agtaaattta ccggctagca tttttccttt tcaaaattaa aaaatttgcc atagactata
     3841 gcatggcttg aaatgctatg tctgcatgat aatttaaaat ggaaaattta aactttgcac
     3901 tccaaaagct tatttggatt cttttcttgc actgttttgt gtaatgcaga ataatgagtt
     3961 tatttctatg gtattgtaga tcctaacatt tatgtatctt tattttcata ttgtacagta
     4021 attttacttt aacttattaa atagcctatt ttatttattt caaatgcagt tgagttgatt
     4081 ctaattattg aactgtctgt gcactgtatg tagcaagcat ttttaatcta ttgtatacaa
     4141 gtggaaaggg tattagaagt gtaactgtgc tattatttca ataaagacct cttgacac
//
LOCUS       XM_032606414            4038 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 25 member 24
            (SLC25A24), mRNA.
ACCESSION   XM_032606414
VERSION     XM_032606414.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4038
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4038
                     /gene="SLC25A24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 18 long SRA reads, 24
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740634"
     CDS             360..1793
                     /gene="SLC25A24"
                     /codon_start=1
                     /product="calcium-binding mitochondrial carrier protein
                     SCaMC-1"
                     /protein_id="XP_032462305.1"
                     /db_xref="GeneID:116740634"
                     /translation="MLRWLLGVVLPAAACQDAEPPTRYETLFHKLDRNGDGVVDICEL
                     QEGLKSLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKQMKLAFKSLDKNN
                     DGKIEASEIVQSLQILGLTISKQQAELILQSIDADGTMTVDWNEWRDYFLFNPVTDIE
                     EIIRFWKHSTGIDIGDSLTVPDEFTEDEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRL
                     KVMMQVHGSKSEKMNIYGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYK
                     KLLTEEGQKVGTFERFVSGSMAGATAQTLIYPMEVLKTRLAVGKTGQYSGMFDCAKKI
                     LKHEGMGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVVVLLGCG
                     ALSSTCGQLASYPLALVRTRMQAQAMVEGAAQLNMVGLFRRIISKEGIPGLYRGITPN
                     FMKVLPAVGISYVVYENMRQTLGVTQK"
     misc_feature    411..812
                     /gene="SLC25A24"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; Region: FRQ1; COG5126"
                     /db_xref="CDD:444056"
     misc_feature    954..1718
                     /gene="SLC25A24"
                     /note="ADP/ATP transporter on adenylate translocase;
                     Provisional; Region: PTZ00169"
                     /db_xref="CDD:240302"
ORIGIN      
        1 ggccgcaccc ctgacagctc cactagggac gccgcagagc ttacctccca ggtctcacag
       61 cccctcccgg gccgcaccct gcaacccttt cacttcctgc ccgctcaagg cagagcctag
      121 cccgtccccc gcgcccatcg ggaaggccgg cgccggccga gctcctcccc aggcagcagc
      181 tggaacggcc actccccgtg caccgagccg agctcgggtg gggacttggc tcttttcagc
      241 ttgtgcgccg cgggcccctt acagccaggc cgcgggcccc ttacagccag gcctcgcgcc
      301 cgagcagcct tcggcccccc tggcgtccct cggctgggcc ggcccgcgcc tccgggacca
      361 tgctgcgctg gctgctgggc gtcgtgctgc ccgcggcggc ctgccaggac gcggagccgc
      421 cgacgcgcta cgagaccctc ttccacaagc tggaccgcaa cggggacggc gtggtggaca
      481 tctgcgagct gcaggagggg ctcaagagcc tgggcatccc cctgggccag gacgccgagg
      541 agaaaatttt tactactggt gatgtcaaca aagacggaaa gctggatttt gaagaattta
      601 tgaagtacct taaagaccat gagaaacaaa tgaaattggc atttaagagt ttggacaaaa
      661 ataatgatgg aaaaattgag gcttctgaaa ttgtccagtc tctccagata ctaggtctaa
      721 ctatttctaa acaacaagca gagttgattc ttcaaagcat cgatgctgat gggacgatga
      781 cagtggactg gaatgaatgg agagactact tcttatttaa ccctgttaca gacattgagg
      841 aaattatccg tttctggaaa cattctactg gtattgacat aggagacagt ttaactgttc
      901 cagatgaatt cacggaagat gaaaagaagt cggggcagtg gtggaggcag cttttggcag
      961 gaggtgttgc tggtgccgtc tctcgaacaa gcactgcccc tttggatcgt ctgaaagtca
     1021 tgatgcaggt ccatggttca aaatcagaga aaatgaacat atatggtggc tttcgacaga
     1081 tggtgaaaga gggaggtatc cgctcacttt ggagaggaaa tggtacaaat gtcattaaaa
     1141 ttgctcctga gacagctgtt aagttctggg catatgaaca gtacaagaag ttgcttactg
     1201 aggaaggaca aaaagtagga acctttgaga gattcgtttc tggttccatg gctggagcaa
     1261 ctgcacagac acttatttat cctatggagg ttctgaaaac caggctggct gtaggcaaaa
     1321 ctggacaata ctctgggatg tttgattgtg ccaagaagat tttgaaacat gaaggcatgg
     1381 gagcttttta caaaggttac gttcccaatt tattaggcat cataccttat gcaggtatag
     1441 atcttgctgt gtatgagctc ttgaagtccc attggctaga taattttgcc aaagactctg
     1501 taaaccctgg agtcgtggtg ctgctgggat gtggtgcctt atccagcacc tgtggtcagc
     1561 tggccagcta ccccttggct ttggtgagaa cacgcatgca ggctcaagcc atggtagaag
     1621 gagccgcaca gctgaacatg gttgggctct ttcgacgaat aatttctaaa gaaggaatac
     1681 caggacttta cagaggcatc accccaaact ttatgaaggt gcttcctgct gtaggcatca
     1741 gttatgtggt ttatgaaaat atgagacaaa ctttaggagt aactcagaag tgatatgctg
     1801 aattttttgc tttagcataa ttattgaaac tttcaaccat ctccagagtg accttttctc
     1861 ctagagctgc aacaagtcca tggcaaaaag aagctgtatt ttttttttca caaaagggaa
     1921 gagcaaatca ttggtaactt caaacatttg gactcaattt tacacattca gaaatgctaa
     1981 aaatgattgt tttgataagc tcatacagtt ttgaaaaggc aataaaatta tatcttttct
     2041 tattagtcct ttctacaaat ctctgcctgg aatcctaaat ctgaaaagat gtacttgctg
     2101 aactaaattt gctttgtgtg aattataaat ctttgatctt tattttggtt ggttcaagtt
     2161 tatgccagtt cctttatact taaatctctt tttcttaaaa acaaaatgat tggaaaacct
     2221 agaaacttat ttatgtattt tgaatgtctt tttaaacttc ttaaaatttc cttgtaggac
     2281 cattcatgga gaatcattgc atgaaaacat aatcttacag cagccaaata ggtataaggt
     2341 ctataatctt ttttaaagct gaataagaat gaacataagt ggcagaactt caaggcatgt
     2401 gaatacccta gtccactcat atgatttttg tgtaaggaag agtgataaaa taatatttat
     2461 ttcagtgagc acttctccat ttgtcttgta ctgttatttg gttcccagga tgacacactg
     2521 atcgtcagta tattactgtt aaattatcaa cacaaggcaa cttatttgaa aaattctgtt
     2581 tattgtcatt gctttgaaaa gcaccaggaa acaaaaccct tttacttgta tcagtttctg
     2641 aagagcatct ctcttctctt tgtcctttgt ttcctacttg aatcagactt ccattttaat
     2701 caggaaggct tctggggacc attcttggtt atctgaaatt tcttaattac atggagtagg
     2761 ttgatcatgg gtgaatggtg ttctcacttc cccctcactt ttaatttatt tgaccctgca
     2821 attctcaatt tgggcagcac aaagctagga gaatagtata tattaatagt agtatatatt
     2881 aattttatat atttggtact ataaatgaaa ggcccaattt acaaacatgt acattcatat
     2941 tttctctttc ccccaatgta gaaacacatt atgatataga aaatttgatt tataatattg
     3001 atagcatgtt tttattttac tgaagccatt ttttgtaatc aactatcttt tctgatttgt
     3061 gtgattagga cttagaaaaa tatttattag ttgaagttat tcttatcatt tttcaattta
     3121 gttctttttt ttttaatatc tttattggag tatactggct ttacaatggt gtgttagttt
     3181 ctgttttata acaaagttaa tcagctatac atatatcccc atattcaatt gagttcttaa
     3241 actcaagttt tatttctagt aatttgttat aaattgccaa cattttaatg gaaatgtagt
     3301 gacataatag acatttactt tatttgaaac tacctctcat attttccgaa ccagagagaa
     3361 atgttggact tgtgtttgtg aaacatatcc taacatatag ttttcattat attaattata
     3421 cctgataaat gtctcagtgt ttttataata catatgataa gaatgggact ctatcttcag
     3481 ggtgtttgta cttttgaata atacataaat gacaatatta aggaacatga ttagctcttt
     3541 tttcacttgt aaaattatgg aatgagtaaa atttcagcta ctgaaaaata ttcattgttc
     3601 attatgaatt taaattgttt gctttttaac atttgtaagg aatgaatgtg atttatctgt
     3661 gtatcttgta tcttttgaaa agagcctgga gttgaagata gtttatttct ggcattactg
     3721 cgtatttact ttctgtttat attaaaatgt ttttgaaatg tcttgtttcc tcatttaaaa
     3781 aaaatagtgt aactaaggca aaaaaaatgg ctgtgtcttg cagtttatat ctttggcagc
     3841 agtttgaata atctgtatag tattactgaa taagactcac tgtagtcttt ccaaatattt
     3901 tggccttttc tgaacagcca taacagttat tacctctgtc atatattttg gtataagatg
     3961 atgtctttcg tgatgtccaa attccacatt taccatttag ggtgataccc ccggggctca
     4021 tagtgccaaa gagagtcc
//
LOCUS       XM_032606426            4989 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus multiple EGF like domains 6 (MEGF6),
            transcript variant X1, mRNA.
ACCESSION   XM_032606426
VERSION     XM_032606426.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4989
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4989
                     /gene="MEGF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740641"
     CDS             1..4434
                     /gene="MEGF6"
                     /codon_start=1
                     /product="multiple epidermal growth factor-like domains
                     protein 6 isoform X1"
                     /protein_id="XP_032462317.1"
                     /db_xref="GeneID:116740641"
                     /translation="MPFLPEAGAAGRAVALALVLLFPAVSAGAGALFRLQPGMPNVCA
                     ERELTLVGRRQPCVQAFSRMVPVWRPGCGRRDWCVGHKRRTVYYTGYRQVYATEAQTV
                     LRCCPGWNQQPGDQGCLSSQCSPGLCFNGGQCVPDSAQLCHCPRGFHGPRCQHDVDEC
                     QVHNGGCQHRCVNTPGSYLCECKPGFRLHADGRTCLAINSCAVGNGGCQHNCVQLTVT
                     QHRCRCRPEFQLQEDGKRCVRRNPCVDRNGGCMHTCRALRGLAHCGCHAGYRLAADRK
                     ACEDVDECATGLAQCAHGCLNTHGSFKCVCNAGYELGADGRQCYRIEMEIVNSCEADN
                     GGCSHGCSHSSTGPVCTCPRGYELDEDQRTCIDVDNCADSPCCQQVCTNSPGGYECSC
                     YAGYQLGADGCGCEDVDECASGRGGCEHHCTNLAGSFQCSCEDGYLLGEDRRGCSPLE
                     MPEVGLDGHLPLVQPLPHVAVLQDELPHLFQDDHVGAEKEAVRGEHTLQEKFVCLDDS
                     FGPDCSLTCADCRNGGTCLPSLHGCDCPDGWTGLTCNEACPPDTFGKNCSFSCSCQNG
                     GTCDPVTGACRCPPGVSGARCEDGCPRGFYGKHCAKKCHCANRGRCHRLYGACLCDPG
                     LYGRFCHLACPPWAFGPGCSEECQCEQRNTRACDRRDGSCACKAGFGGERCQDECQPG
                     FFGPGCRQACTCPPGVACDPVSGQCGKQCPDGYQGEDCSQECPAGTFGKNCSGFCFCE
                     GAPCDLVTGRCLCPPGRTGADCGADCPEGRWGLGCQEICPACEHGASCEPETGACLCR
                     PGFMGGRCQDTCPAGWFGPSCQMRCSCINDGLCHPVTGHCSCAPGWTGLSCQRACDSG
                     HWGPDCSHPCNCSAGHGSCDAISGLCLCEAGYVGLWCEQRCPQGYFGPGCGRQCQCEH
                     GAACDHVSGACTCPAGWRGTFCERACPAGFFGVDCHHACDCSTGVPCDAVNGSCLCPP
                     GRRGPRCAQTCPAHTYGHNCSQACSCFNGASCDPVHGQCRCGPGWTGPTCLQACPAGL
                     YGKDCQHSCLCQNRGTCDPVSGHCTCPEGWAGLACEKASAECPPGFSGAGCQHVCGCL
                     HGGLCDRHTGHCRCPAGWTGDECQSPCPPGWFGEACAQRCQCPPGVACHHITGECHCP
                     PGFNGPGCEQGCPPGRFGPGCEQPCGCLNGGSCDAATGACHCPSGFLGTDCSLACPHG
                     RFGPRCAHVCSCGQGAACDPVTGTCSCPPGRTGVHCEHGCPQNRFGVNCEHMCSCRNG
                     GLCHAASGSCSCGLGWTGLHCELACPAGRYGAACRLECSCRNHGTCEPSSGACHCGPG
                     FYGQACEHPCPAGFHGAGCRGTCECQHGAPCDPVSGRCLCPAGFRGQFCEKGCESGSF
                     GEGCNQQCDCEDGVPCDPITGHCLCPPGLMGATCDLGCRSGFFGPGCALRCSCGGGAD
                     CDAVSGQCHCVDGYVGPMCQQVASQSASHRPRLSSSSAEKQ"
     misc_feature    118..327
                     /gene="MEGF6"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    478..585
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    601..711
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    727..834
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    <826..951
                     /gene="MEGF6"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
     misc_feature    988..1095
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    1129..1215
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    <1213..1332
                     /gene="MEGF6"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
ORIGIN      
        1 atgcctttcc ttccggaggc gggggcggcg gggcgcgcgg tagccctggc cctggtgctg
       61 ctgttccccg ccgtgtcagc gggcgccggc gccctgttcc gcctgcagcc cggcatgccc
      121 aacgtgtgtg cggagcggga gctgaccctg gtgggccgtc gccagccctg tgtgcaggcc
      181 ttcagccgca tggtgcccgt gtggaggccg ggctgcgggc ggcgggactg gtgtgtcggc
      241 cacaaacgca gaaccgtcta ctacacgggc tacaggcagg tgtacgccac ggaggcccag
      301 accgtgttgc ggtgctgccc ggggtggaac cagcagcccg gagaccaggg ctgcctctcc
      361 tcccagtgca gccccggcct ctgctttaac ggcggccagt gcgtgcccga ctcggcccag
      421 ctgtgccact gtccccgcgg cttccacggt ccccgctgtc agcacgacgt ggacgagtgc
      481 caggtgcaca acggtggctg ccagcacagg tgtgtgaaca cgccaggctc ctacctctgt
      541 gagtgcaagc ccggcttccg gctccacgcg gatggcagga cctgcctggc catcaactcc
      601 tgcgccgtgg gcaatggcgg ctgccaacac aactgtgtcc agctcacggt gacccagcac
      661 cgctgccggt gccggcccga gttccagctc caggaggatg gcaagcgctg cgtccggagg
      721 aacccgtgtg tggatcggaa cggcggctgc atgcacacgt gccgggcgct ccggggcctt
      781 gcccactgcg ggtgccacgc aggataccgg ctggcagcag accgcaaggc ctgcgaagat
      841 gtggatgaat gtgccacagg cctggcccag tgtgcccacg gctgcctcaa cactcatggg
      901 tcctttaagt gtgtgtgcaa cgcaggctac gagctgggtg ccgacggccg gcagtgctac
      961 cggatcgaga tggagatagt gaacagctgc gaggcggaca acggcggctg ctcccacggc
     1021 tgcagccaca gcagcacagg gcccgtgtgc acctgccccc gtggctacga gctggacgag
     1081 gaccagagga cgtgcattga tgtcgataac tgtgccgact ccccgtgctg ccagcaggtt
     1141 tgcaccaata gccctggcgg ctacgagtgc agctgctatg ccggctacca gcttggcgcc
     1201 gacggctgcg gctgtgagga cgtggacgag tgcgcctccg gccgtggcgg ctgtgagcac
     1261 cactgcacga acctggccgg ctccttccag tgctcctgtg aggatggcta cctgctgggc
     1321 gaggaccgcc ggggctgcag ccccctggag atgcccgagg tgggcctgga cggccacctg
     1381 cccctggtgc agcccctccc gcacgtagcg gtgctccagg acgagctgcc ccacctcttc
     1441 caagatgacc acgtcggggc cgagaaggag gcggtgcggg gcgaacacac actgcaagag
     1501 aagtttgtct gcctggacga ctcctttggc ccagattgca gcttgacctg cgctgactgc
     1561 aggaacgggg ggacctgcct ccccagcctg catggctgtg actgccccga cggctggacc
     1621 gggctcacct gcaatgaggc ttgtccccca gacaccttcg ggaagaactg cagcttctcc
     1681 tgcagctgtc agaacggcgg gacctgcgac cctgtgacag gggcctgccg ctgccctccg
     1741 ggtgtcagtg gagcccgctg tgaggacggc tgccccagag gcttctacgg caagcactgc
     1801 gctaagaagt gccactgtgc caaccggggc cggtgccacc gcctctacgg ggcctgcctc
     1861 tgcgacccgg ggctctatgg ccgcttctgc cacctggcct gcccaccgtg ggccttcggg
     1921 ccgggctgct cggaggagtg ccagtgtgag cagcggaaca cgcgcgcgtg tgacaggagg
     1981 gacggcagct gtgcctgcaa ggcgggcttc gggggcgagc ggtgccagga cgagtgccag
     2041 ccgggcttct ttgggccagg ctgccggcag gcgtgcacct gccccccggg cgtggcctgt
     2101 gaccctgtca gcggccagtg tgggaagcag tgtcctgatg gctaccaggg ggaggactgc
     2161 agccaagagt gcccggccgg gacgttcggc aagaactgct caggcttctg cttctgcgag
     2221 ggcgccccct gcgacctggt cacggggcgg tgcctgtgcc ctcctgggag gaccggggct
     2281 gactgtgggg cagattgtcc tgagggtcgc tgggggctcg gctgccagga gatctgcccg
     2341 gcgtgcgagc acggtgcctc ctgtgagcct gagaccggag cctgcctgtg ccgccccggc
     2401 ttcatgggcg gccgctgcca ggacacttgc ccagcaggct ggtttgggcc cagctgccag
     2461 atgcgatgct cctgcatcaa cgacgggctc tgccacccgg tgactggcca ctgcagctgc
     2521 gccccggggt ggaccggcct cagctgccag agagcctgtg acagcggcca ctgggggccc
     2581 gactgcagcc acccctgcaa ctgcagcgca ggccacggga gctgcgacgc catcagcggc
     2641 ctgtgtctgt gtgaggccgg ctatgtgggc ctgtggtgcg agcagcggtg tccccagggc
     2701 tacttcgggc cgggctgtgg gcggcagtgc cagtgtgagc acggggcagc ctgtgaccat
     2761 gtcagtgggg cctgtacctg cccggccggc tggaggggaa ccttctgtga gcgcgcctgc
     2821 cctgccggct tcttcggagt ggactgccac cacgcctgtg actgcagcac cggggtgccc
     2881 tgcgacgccg taaacggctc ctgcctctgc cctcctggcc gccggggtcc ccgctgtgcc
     2941 cagacctgcc cagcccacac gtacggccac aactgcagcc aggcctgctc ctgctttaat
     3001 ggggcctcct gtgatcctgt ccacgggcag tgtcgctgtg gccctggctg gacggggccc
     3061 acctgcctac aggcctgccc tgcaggcctc tacggcaagg actgccagca ttcctgcctc
     3121 tgccagaacc ggggcacctg tgaccctgtc tcaggccact gcacctgccc cgagggctgg
     3181 gctgggctgg cctgtgagaa agcctctgca gagtgtcccc cggggttctc cggagccggc
     3241 tgccagcacg tctgcgggtg cctccacggc ggcctctgtg accggcacac aggccactgc
     3301 cgctgcccgg ccggctggac cggggatgag tgccagagcc cctgcccgcc cggctggttt
     3361 ggagaggcct gtgcccagcg ctgccagtgc ccacccggcg ttgcctgtca ccacatcacc
     3421 ggagagtgtc actgtccccc aggcttcaat gggcccggct gtgagcaggg gtgcccgccc
     3481 gggcggttcg ggcccggctg tgagcagccg tgtgggtgtc tcaacggggg ctcctgtgac
     3541 gcggccacag gggcctgcca ctgcccatct gggttcctcg gaacggactg cagcctcgcc
     3601 tgtccacacg gccgctttgg cccccgctgt gcccacgtgt gcagttgtgg gcagggggcg
     3661 gcttgtgacc ccgtgaccgg cacctgctcc tgcccccccg ggaggaccgg cgtccactgt
     3721 gagcacggtt gcccccagaa ccggtttggt gtgaactgtg agcacatgtg ctcctgcagg
     3781 aacgggggcc tgtgccacgc tgccagcggc agctgctcct gcggcctggg ctggaccggg
     3841 ctgcactgcg agctggcctg ccccgctggg cgctacggtg ccgcctgccg cctggaatgc
     3901 tcctgccgca accacggcac ctgtgagccc tcgtcgggcg cctgccactg cggccccggc
     3961 ttctacggcc aggcctgcga gcacccctgt cccgctggct tccacggggc tggctgccgg
     4021 gggacgtgcg agtgtcagca cggcgccccc tgcgaccccg tcagtggcag gtgcctctgc
     4081 cctgccggct tccgcggcca gttctgcgag aaggggtgtg agtcgggctc atttggagaa
     4141 ggctgcaacc agcagtgtga ctgcgaggat ggggtgccct gcgaccccat caccggccac
     4201 tgcctatgcc ccccggggct catgggggcc acctgtgacc tgggctgcag aagtggcttc
     4261 ttcgggccag gctgtgcctt gcgctgctcc tgcgggggtg gggctgactg cgacgctgtc
     4321 agtgggcagt gccactgcgt ggacggctac gtggggccca tgtgccagca ggtggcttca
     4381 cagtcagcct cccaccgccc ccggctcagc agcagcagcg cagagaagca gtagctcagg
     4441 ggcagcgccc gccgaggcct gtctcccagg ggccgctgag aggacccagg ggccttggtg
     4501 accactgagg agggacgccg ggggccggga ctcctgcccc acccttgtct ccgacagtcg
     4561 tgcagctgca aggatcgtct ggccacgagg agggaggccc tgcccggccg cgctctgcag
     4621 cactggggca ccggcgcggg gccacagtgt ggaggaagcc cccagccggc gccctggggc
     4681 gggactgcgg gcgggtgtgg gtgcaggtgc gggcgtgggg cccctgccct cggagcaggt
     4741 tcttctggtg ctaggcccgg ggactgctgc agctcggcct gtttacctgg aaacagctgg
     4801 gccgtattta tggaaaggta tttatgggca gccagacatg cccactgcac ccccgggcgc
     4861 tggagggctg cccgcctcct gcccagcccg ggaagccctg actcgggact gcgggaccct
     4921 gaggggcctc tgggtgggcg cttcggtacc atgtgaaacc cagtaagtta agaaaggagc
     4981 agccacttc
//
LOCUS       XM_032606435            5052 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus multiple EGF like domains 6 (MEGF6),
            transcript variant X2, mRNA.
ACCESSION   XM_032606435
VERSION     XM_032606435.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5052
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5052
                     /gene="MEGF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740641"
     CDS             16..4497
                     /gene="MEGF6"
                     /codon_start=1
                     /product="multiple epidermal growth factor-like domains
                     protein 6 isoform X2"
                     /protein_id="XP_032462326.1"
                     /db_xref="GeneID:116740641"
                     /translation="MPFLPEAGAAGRAVALALVLLFPAVSAGAGALFRLQPGMPNVCA
                     ERELTLVGRRQPCVQAFSRMVPVWRPGCGRRDWCVGHKRRTVYYTGYRQVYATEAQTV
                     LRCCPGWNQQPGDQGCLSSQCSPGLCFNGGQCVPDSAQLCHCPRGFHGPRCQHDVDEC
                     QVHNGGCQHRCVNTPGSYLCECKPGFRLHADGRTCLAINSCAVGNGGCQHNCVQLTVT
                     QHRCRCRPEFQLQEDGKRCVRRNPCVDRNGGCMHTCRALRGLAHCGCHAGYRLAADRK
                     ACEDVDECATGLAQCAHGCLNTHGSFKCVCNAGYELGADGRQCYRIEMEIVNSCEADN
                     GGCSHGCSHSSTGPVCTCPRGYELDEDQRTCIDVDNCADSPCCQQVCTNSPGGYECSC
                     YAGYQLGADGCGCEDVDECASGRGGCEHHCTNLAGSFQCSCEDGYLLGEDRRGCSPLE
                     MPEVGLDGHLPLVQPLPHVAVLQDELPHLFQDDHVGAEKEAVRGEHTLQEKFVCLDDS
                     FGPDCSLTCADCRNGGTCLPSLHGCDCPDGWTGLTCNEACPPDTFGKNCSFSCSCQNG
                     GTCDPVTGACRCPPGVSGARCEDGCPRGFYGKHCAKKCHCANRGRCHRLYGACLCDPG
                     LYGRFCHLACPPWAFGPGCSEECQCEQRNTRACDRRDGSCACKAGFGGERCQDECQPG
                     FFGPGCRQACTCPPGVACDPVSGQCGKQCPDGYQGEDCSQECPAGTFGKNCSGFCFCE
                     GAPCDLVTGRCLCPPGRTGADCGADCPEGRWGLGCQEICPACEHGASCEPETGACLCR
                     PGFMGGRCQDTCPAGWFGPSCQMRCSCINDGLCHPVTGHCSCAPGWTGLSCQRACDSG
                     HWGPDCSHPCNCSAGHGSCDAISGLCLCEAGYVGLWCEQRCPQGYFGPGCGRQCQCEH
                     GAACDHVSGACTCPAGWRGTFCERACPAGFFGVDCHHACDCSTGVPCDAVNGSCLCPP
                     GRRGPRCAQTCPAHTYGHNCSQACSCFNGASCDPVHGQCRCGPGWTGPTCLQACPAGL
                     YGKDCQHSCLCQNRGTCDPVSGHCTCPEGWAGLACEKASAECPPGFSGAGCQHVCGCL
                     HGGLCDRHTGHCRCPAGWTGDECQSPCPPGWFGEACAQRCQCPPGVACHHITGECHCP
                     PGFNGPGCEQGCPPGRFGPGCEQPCGCLNGGSCDAATGACHCPSGFLGTDCSLACPHG
                     RFGPRCAHVCSCGQGAACDPVTGTCSCPPGRTGVHCEHGCPQNRFGVNCEHMCSCRNG
                     GLCHAASGSCSCGLGWTGLHCELACPAGRYGAACRLECSCRNHGTCEPSSGACHCGPG
                     FYGQACEHPCPAGFHGAGCRGTCECQHGAPCDPVSGRCLCPAGFRGQFCEKGCESGSF
                     GEGCNQQCDCEDGVPCDPITGHCLCPPGLMGATCDLGCRSGFFGPGCALRCSCGGGAD
                     CDAVSGQCHCVDGYVGPMCQQGGPSQFPETPSTALGPVASQSASHRPRLSSSSAEKQ"
     misc_feature    133..342
                     /gene="MEGF6"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    493..600
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    616..726
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    742..849
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    <841..966
                     /gene="MEGF6"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
     misc_feature    1003..1110
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    1144..1230
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    <1228..1347
                     /gene="MEGF6"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
ORIGIN      
        1 ggcgcagcgg gcacgatgcc tttccttccg gaggcggggg cggcggggcg cgcggtagcc
       61 ctggccctgg tgctgctgtt ccccgccgtg tcagcgggcg ccggcgccct gttccgcctg
      121 cagcccggca tgcccaacgt gtgtgcggag cgggagctga ccctggtggg ccgtcgccag
      181 ccctgtgtgc aggccttcag ccgcatggtg cccgtgtgga ggccgggctg cgggcggcgg
      241 gactggtgtg tcggccacaa acgcagaacc gtctactaca cgggctacag gcaggtgtac
      301 gccacggagg cccagaccgt gttgcggtgc tgcccggggt ggaaccagca gcccggagac
      361 cagggctgcc tctcctccca gtgcagcccc ggcctctgct ttaacggcgg ccagtgcgtg
      421 cccgactcgg cccagctgtg ccactgtccc cgcggcttcc acggtccccg ctgtcagcac
      481 gacgtggacg agtgccaggt gcacaacggt ggctgccagc acaggtgtgt gaacacgcca
      541 ggctcctacc tctgtgagtg caagcccggc ttccggctcc acgcggatgg caggacctgc
      601 ctggccatca actcctgcgc cgtgggcaat ggcggctgcc aacacaactg tgtccagctc
      661 acggtgaccc agcaccgctg ccggtgccgg cccgagttcc agctccagga ggatggcaag
      721 cgctgcgtcc ggaggaaccc gtgtgtggat cggaacggcg gctgcatgca cacgtgccgg
      781 gcgctccggg gccttgccca ctgcgggtgc cacgcaggat accggctggc agcagaccgc
      841 aaggcctgcg aagatgtgga tgaatgtgcc acaggcctgg cccagtgtgc ccacggctgc
      901 ctcaacactc atgggtcctt taagtgtgtg tgcaacgcag gctacgagct gggtgccgac
      961 ggccggcagt gctaccggat cgagatggag atagtgaaca gctgcgaggc ggacaacggc
     1021 ggctgctccc acggctgcag ccacagcagc acagggcccg tgtgcacctg cccccgtggc
     1081 tacgagctgg acgaggacca gaggacgtgc attgatgtcg ataactgtgc cgactccccg
     1141 tgctgccagc aggtttgcac caatagccct ggcggctacg agtgcagctg ctatgccggc
     1201 taccagcttg gcgccgacgg ctgcggctgt gaggacgtgg acgagtgcgc ctccggccgt
     1261 ggcggctgtg agcaccactg cacgaacctg gccggctcct tccagtgctc ctgtgaggat
     1321 ggctacctgc tgggcgagga ccgccggggc tgcagccccc tggagatgcc cgaggtgggc
     1381 ctggacggcc acctgcccct ggtgcagccc ctcccgcacg tagcggtgct ccaggacgag
     1441 ctgccccacc tcttccaaga tgaccacgtc ggggccgaga aggaggcggt gcggggcgaa
     1501 cacacactgc aagagaagtt tgtctgcctg gacgactcct ttggcccaga ttgcagcttg
     1561 acctgcgctg actgcaggaa cggggggacc tgcctcccca gcctgcatgg ctgtgactgc
     1621 cccgacggct ggaccgggct cacctgcaat gaggcttgtc ccccagacac cttcgggaag
     1681 aactgcagct tctcctgcag ctgtcagaac ggcgggacct gcgaccctgt gacaggggcc
     1741 tgccgctgcc ctccgggtgt cagtggagcc cgctgtgagg acggctgccc cagaggcttc
     1801 tacggcaagc actgcgctaa gaagtgccac tgtgccaacc ggggccggtg ccaccgcctc
     1861 tacggggcct gcctctgcga cccggggctc tatggccgct tctgccacct ggcctgccca
     1921 ccgtgggcct tcgggccggg ctgctcggag gagtgccagt gtgagcagcg gaacacgcgc
     1981 gcgtgtgaca ggagggacgg cagctgtgcc tgcaaggcgg gcttcggggg cgagcggtgc
     2041 caggacgagt gccagccggg cttctttggg ccaggctgcc ggcaggcgtg cacctgcccc
     2101 ccgggcgtgg cctgtgaccc tgtcagcggc cagtgtggga agcagtgtcc tgatggctac
     2161 cagggggagg actgcagcca agagtgcccg gccgggacgt tcggcaagaa ctgctcaggc
     2221 ttctgcttct gcgagggcgc cccctgcgac ctggtcacgg ggcggtgcct gtgccctcct
     2281 gggaggaccg gggctgactg tggggcagat tgtcctgagg gtcgctgggg gctcggctgc
     2341 caggagatct gcccggcgtg cgagcacggt gcctcctgtg agcctgagac cggagcctgc
     2401 ctgtgccgcc ccggcttcat gggcggccgc tgccaggaca cttgcccagc aggctggttt
     2461 gggcccagct gccagatgcg atgctcctgc atcaacgacg ggctctgcca cccggtgact
     2521 ggccactgca gctgcgcccc ggggtggacc ggcctcagct gccagagagc ctgtgacagc
     2581 ggccactggg ggcccgactg cagccacccc tgcaactgca gcgcaggcca cgggagctgc
     2641 gacgccatca gcggcctgtg tctgtgtgag gccggctatg tgggcctgtg gtgcgagcag
     2701 cggtgtcccc agggctactt cgggccgggc tgtgggcggc agtgccagtg tgagcacggg
     2761 gcagcctgtg accatgtcag tggggcctgt acctgcccgg ccggctggag gggaaccttc
     2821 tgtgagcgcg cctgccctgc cggcttcttc ggagtggact gccaccacgc ctgtgactgc
     2881 agcaccgggg tgccctgcga cgccgtaaac ggctcctgcc tctgccctcc tggccgccgg
     2941 ggtccccgct gtgcccagac ctgcccagcc cacacgtacg gccacaactg cagccaggcc
     3001 tgctcctgct ttaatggggc ctcctgtgat cctgtccacg ggcagtgtcg ctgtggccct
     3061 ggctggacgg ggcccacctg cctacaggcc tgccctgcag gcctctacgg caaggactgc
     3121 cagcattcct gcctctgcca gaaccggggc acctgtgacc ctgtctcagg ccactgcacc
     3181 tgccccgagg gctgggctgg gctggcctgt gagaaagcct ctgcagagtg tcccccgggg
     3241 ttctccggag ccggctgcca gcacgtctgc gggtgcctcc acggcggcct ctgtgaccgg
     3301 cacacaggcc actgccgctg cccggccggc tggaccgggg atgagtgcca gagcccctgc
     3361 ccgcccggct ggtttggaga ggcctgtgcc cagcgctgcc agtgcccacc cggcgttgcc
     3421 tgtcaccaca tcaccggaga gtgtcactgt cccccaggct tcaatgggcc cggctgtgag
     3481 caggggtgcc cgcccgggcg gttcgggccc ggctgtgagc agccgtgtgg gtgtctcaac
     3541 gggggctcct gtgacgcggc cacaggggcc tgccactgcc catctgggtt cctcggaacg
     3601 gactgcagcc tcgcctgtcc acacggccgc tttggccccc gctgtgccca cgtgtgcagt
     3661 tgtgggcagg gggcggcttg tgaccccgtg accggcacct gctcctgccc ccccgggagg
     3721 accggcgtcc actgtgagca cggttgcccc cagaaccggt ttggtgtgaa ctgtgagcac
     3781 atgtgctcct gcaggaacgg gggcctgtgc cacgctgcca gcggcagctg ctcctgcggc
     3841 ctgggctgga ccgggctgca ctgcgagctg gcctgccccg ctgggcgcta cggtgccgcc
     3901 tgccgcctgg aatgctcctg ccgcaaccac ggcacctgtg agccctcgtc gggcgcctgc
     3961 cactgcggcc ccggcttcta cggccaggcc tgcgagcacc cctgtcccgc tggcttccac
     4021 ggggctggct gccgggggac gtgcgagtgt cagcacggcg ccccctgcga ccccgtcagt
     4081 ggcaggtgcc tctgccctgc cggcttccgc ggccagttct gcgagaaggg gtgtgagtcg
     4141 ggctcatttg gagaaggctg caaccagcag tgtgactgcg aggatggggt gccctgcgac
     4201 cccatcaccg gccactgcct atgccccccg gggctcatgg gggccacctg tgacctgggc
     4261 tgcagaagtg gcttcttcgg gccaggctgt gccttgcgct gctcctgcgg gggtggggct
     4321 gactgcgacg ctgtcagtgg gcagtgccac tgcgtggacg gctacgtggg gcccatgtgc
     4381 cagcagggtg ggccctccca gttccccgag accccatcca cagccctggg cccagtggct
     4441 tcacagtcag cctcccaccg cccccggctc agcagcagca gcgcagagaa gcagtagctc
     4501 aggggcagcg cccgccgagg cctgtctccc aggggccgct gagaggaccc aggggccttg
     4561 gtgaccactg aggagggacg ccgggggccg ggactcctgc cccacccttg tctccgacag
     4621 tcgtgcagct gcaaggatcg tctggccacg aggagggagg ccctgcccgg ccgcgctctg
     4681 cagcactggg gcaccggcgc ggggccacag tgtggaggaa gcccccagcc ggcgccctgg
     4741 ggcgggactg cgggcgggtg tgggtgcagg tgcgggcgtg gggcccctgc cctcggagca
     4801 ggttcttctg gtgctaggcc cggggactgc tgcagctcgg cctgtttacc tggaaacagc
     4861 tgggccgtat ttatggaaag gtatttatgg gcagccagac atgcccactg cacccccggg
     4921 cgctggaggg ctgcccgcct cctgcccagc ccgggaagcc ctgactcggg actgcgggac
     4981 cctgaggggc ctctgggtgg gcgcttcggt accatgtgaa acccagtaag ttaagaaagg
     5041 agcagccact tc
//
LOCUS       XM_032606444            3992 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus multiple EGF like domains 6 (MEGF6),
            transcript variant X3, mRNA.
ACCESSION   XM_032606444
VERSION     XM_032606444.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3992
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3992
                     /gene="MEGF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740641"
     CDS             1..3864
                     /gene="MEGF6"
                     /codon_start=1
                     /product="multiple epidermal growth factor-like domains
                     protein 6 isoform X3"
                     /protein_id="XP_032462335.1"
                     /db_xref="GeneID:116740641"
                     /translation="MPFLPEAGAAGRAVALALVLLFPAVSAGAGALFRLQPGMPNVCA
                     ERELTLVGRRQPCVQAFSRMVPVWRPGCGRRDWCVGHKRRTVYYTGYRQVYATEAQTV
                     LRCCPGWNQQPGDQGCLSSQCSPGLCFNGGQCVPDSAQLCHCPRGFHGPRCQHDVDEC
                     QVHNGGCQHRCVNTPGSYLCECKPGFRLHADGRTCLAINSCAVGNGGCQHNCVQLTVT
                     QHRCRCRPEFQLQEDGKRCVRRNPCVDRNGGCMHTCRALRGLAHCGCHAGYRLAADRK
                     ACEDVDECATGLAQCAHGCLNTHGSFKCVCNAGYELGADGRQCYRIEMEIVNSCEADN
                     GGCSHGCSHSSTGPVCTCPRGYELDEDQRTCIDVDNCADSPCCQQVCTNSPGGYECSC
                     YAGYQLGADGCGCEDVDECASGRGGCEHHCTNLAGSFQCSCEDGYLLGEDRRGCSPLE
                     MPEVGLDGHLPLVQPLPHVAVLQDELPHLFQDDHVGAEKEAVRGEHTLQEKFVCLDDS
                     FGPDCSLTCADCRNGGTCLPSLHGCDCPDGWTGLTCNEACPPDTFGKNCSFSCSCQNG
                     GTCDPVTGACRCPPGVSGARCEDGCPRGFYGKHCAKKCHCANRGRCHRLYGACLCDPG
                     LYGRFCHLACPPWAFGPGCSEECQCEQRNTRACDRRDGSCACKAGFGGERCQDECQPG
                     FFGPGCRQACTCPPGVACDPVSGQCGKQCPDGYQGEDCSQECPAGTFGKNCSGFCFCE
                     GAPCDLVTGRCLCPPGRTGADCGADCPEGRWGLGCQEICPACEHGASCEPETGACLCR
                     PGFMGGRCQDTCPAGWFGPSCQMRCSCINDGLCHPVTGHCSCAPGWTGLSCQRACDSG
                     HWGPDCSHPCNCSAGHGSCDAISGLCLCEAGYVGLWCEQRCPQGYFGPGCGRQCQCEH
                     GAACDHVSGACTCPAGWRGTFCERACPAGFFGVDCHHACDCSTGVPCDAVNGSCLCPP
                     GRRGPRCAQTCPAHTYGHNCSQACSCFNGASCDPVHGQCRCGPGWTGPTCLQACPAGL
                     YGKDCQHSCLCQNRGTCDPVSGHCTCPEGWAGLACEKASAECPPGFSGAGCQHVCGCL
                     HGGLCDRHTGHCRCPAGWTGDECQSPCPPGWFGEACAQRCQCPPGVACHHITGECHCP
                     PGFNGPGCEQGCPPGRFGPGCEQPCGCLNGGSCDAATGACHCPSGFLGTDCSLACPHG
                     RFGPRCAHVCSCGQGAACDPVTGTCSCPPGRTGVHCEHGCPQNRFGVNCEHMCSCRNG
                     GLCHAASGSCSCGLGWTGLHCELGG"
     misc_feature    118..327
                     /gene="MEGF6"
                     /note="EMI domain; Region: EMI; pfam07546"
                     /db_xref="CDD:462204"
     misc_feature    478..585
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    601..711
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    727..834
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    <826..951
                     /gene="MEGF6"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
     misc_feature    988..1095
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    1129..1215
                     /gene="MEGF6"
                     /note="Coagulation Factor Xa inhibitory site; Region:
                     FXa_inhibition; pfam14670"
                     /db_xref="CDD:464251"
     misc_feature    <1213..1332
                     /gene="MEGF6"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:469594"
ORIGIN      
        1 atgcctttcc ttccggaggc gggggcggcg gggcgcgcgg tagccctggc cctggtgctg
       61 ctgttccccg ccgtgtcagc gggcgccggc gccctgttcc gcctgcagcc cggcatgccc
      121 aacgtgtgtg cggagcggga gctgaccctg gtgggccgtc gccagccctg tgtgcaggcc
      181 ttcagccgca tggtgcccgt gtggaggccg ggctgcgggc ggcgggactg gtgtgtcggc
      241 cacaaacgca gaaccgtcta ctacacgggc tacaggcagg tgtacgccac ggaggcccag
      301 accgtgttgc ggtgctgccc ggggtggaac cagcagcccg gagaccaggg ctgcctctcc
      361 tcccagtgca gccccggcct ctgctttaac ggcggccagt gcgtgcccga ctcggcccag
      421 ctgtgccact gtccccgcgg cttccacggt ccccgctgtc agcacgacgt ggacgagtgc
      481 caggtgcaca acggtggctg ccagcacagg tgtgtgaaca cgccaggctc ctacctctgt
      541 gagtgcaagc ccggcttccg gctccacgcg gatggcagga cctgcctggc catcaactcc
      601 tgcgccgtgg gcaatggcgg ctgccaacac aactgtgtcc agctcacggt gacccagcac
      661 cgctgccggt gccggcccga gttccagctc caggaggatg gcaagcgctg cgtccggagg
      721 aacccgtgtg tggatcggaa cggcggctgc atgcacacgt gccgggcgct ccggggcctt
      781 gcccactgcg ggtgccacgc aggataccgg ctggcagcag accgcaaggc ctgcgaagat
      841 gtggatgaat gtgccacagg cctggcccag tgtgcccacg gctgcctcaa cactcatggg
      901 tcctttaagt gtgtgtgcaa cgcaggctac gagctgggtg ccgacggccg gcagtgctac
      961 cggatcgaga tggagatagt gaacagctgc gaggcggaca acggcggctg ctcccacggc
     1021 tgcagccaca gcagcacagg gcccgtgtgc acctgccccc gtggctacga gctggacgag
     1081 gaccagagga cgtgcattga tgtcgataac tgtgccgact ccccgtgctg ccagcaggtt
     1141 tgcaccaata gccctggcgg ctacgagtgc agctgctatg ccggctacca gcttggcgcc
     1201 gacggctgcg gctgtgagga cgtggacgag tgcgcctccg gccgtggcgg ctgtgagcac
     1261 cactgcacga acctggccgg ctccttccag tgctcctgtg aggatggcta cctgctgggc
     1321 gaggaccgcc ggggctgcag ccccctggag atgcccgagg tgggcctgga cggccacctg
     1381 cccctggtgc agcccctccc gcacgtagcg gtgctccagg acgagctgcc ccacctcttc
     1441 caagatgacc acgtcggggc cgagaaggag gcggtgcggg gcgaacacac actgcaagag
     1501 aagtttgtct gcctggacga ctcctttggc ccagattgca gcttgacctg cgctgactgc
     1561 aggaacgggg ggacctgcct ccccagcctg catggctgtg actgccccga cggctggacc
     1621 gggctcacct gcaatgaggc ttgtccccca gacaccttcg ggaagaactg cagcttctcc
     1681 tgcagctgtc agaacggcgg gacctgcgac cctgtgacag gggcctgccg ctgccctccg
     1741 ggtgtcagtg gagcccgctg tgaggacggc tgccccagag gcttctacgg caagcactgc
     1801 gctaagaagt gccactgtgc caaccggggc cggtgccacc gcctctacgg ggcctgcctc
     1861 tgcgacccgg ggctctatgg ccgcttctgc cacctggcct gcccaccgtg ggccttcggg
     1921 ccgggctgct cggaggagtg ccagtgtgag cagcggaaca cgcgcgcgtg tgacaggagg
     1981 gacggcagct gtgcctgcaa ggcgggcttc gggggcgagc ggtgccagga cgagtgccag
     2041 ccgggcttct ttgggccagg ctgccggcag gcgtgcacct gccccccggg cgtggcctgt
     2101 gaccctgtca gcggccagtg tgggaagcag tgtcctgatg gctaccaggg ggaggactgc
     2161 agccaagagt gcccggccgg gacgttcggc aagaactgct caggcttctg cttctgcgag
     2221 ggcgccccct gcgacctggt cacggggcgg tgcctgtgcc ctcctgggag gaccggggct
     2281 gactgtgggg cagattgtcc tgagggtcgc tgggggctcg gctgccagga gatctgcccg
     2341 gcgtgcgagc acggtgcctc ctgtgagcct gagaccggag cctgcctgtg ccgccccggc
     2401 ttcatgggcg gccgctgcca ggacacttgc ccagcaggct ggtttgggcc cagctgccag
     2461 atgcgatgct cctgcatcaa cgacgggctc tgccacccgg tgactggcca ctgcagctgc
     2521 gccccggggt ggaccggcct cagctgccag agagcctgtg acagcggcca ctgggggccc
     2581 gactgcagcc acccctgcaa ctgcagcgca ggccacggga gctgcgacgc catcagcggc
     2641 ctgtgtctgt gtgaggccgg ctatgtgggc ctgtggtgcg agcagcggtg tccccagggc
     2701 tacttcgggc cgggctgtgg gcggcagtgc cagtgtgagc acggggcagc ctgtgaccat
     2761 gtcagtgggg cctgtacctg cccggccggc tggaggggaa ccttctgtga gcgcgcctgc
     2821 cctgccggct tcttcggagt ggactgccac cacgcctgtg actgcagcac cggggtgccc
     2881 tgcgacgccg taaacggctc ctgcctctgc cctcctggcc gccggggtcc ccgctgtgcc
     2941 cagacctgcc cagcccacac gtacggccac aactgcagcc aggcctgctc ctgctttaat
     3001 ggggcctcct gtgatcctgt ccacgggcag tgtcgctgtg gccctggctg gacggggccc
     3061 acctgcctac aggcctgccc tgcaggcctc tacggcaagg actgccagca ttcctgcctc
     3121 tgccagaacc ggggcacctg tgaccctgtc tcaggccact gcacctgccc cgagggctgg
     3181 gctgggctgg cctgtgagaa agcctctgca gagtgtcccc cggggttctc cggagccggc
     3241 tgccagcacg tctgcgggtg cctccacggc ggcctctgtg accggcacac aggccactgc
     3301 cgctgcccgg ccggctggac cggggatgag tgccagagcc cctgcccgcc cggctggttt
     3361 ggagaggcct gtgcccagcg ctgccagtgc ccacccggcg ttgcctgtca ccacatcacc
     3421 ggagagtgtc actgtccccc aggcttcaat gggcccggct gtgagcaggg gtgcccgccc
     3481 gggcggttcg ggcccggctg tgagcagccg tgtgggtgtc tcaacggggg ctcctgtgac
     3541 gcggccacag gggcctgcca ctgcccatct gggttcctcg gaacggactg cagcctcgcc
     3601 tgtccacacg gccgctttgg cccccgctgt gcccacgtgt gcagttgtgg gcagggggcg
     3661 gcttgtgacc ccgtgaccgg cacctgctcc tgcccccccg ggaggaccgg cgtccactgt
     3721 gagcacggtt gcccccagaa ccggtttggt gtgaactgtg agcacatgtg ctcctgcagg
     3781 aacgggggcc tgtgccacgc tgccagcggc agctgctcct gcggcctggg ctggaccggg
     3841 ctgcactgcg agctgggagg ctgacccgcc ggccccctcc ccagcctgcc ccgctgggcg
     3901 ctacggtgcc gcctgccgcc tggaatgctc ctgccgcaac cacggcacct gtgagccctc
     3961 gtcgggcgcc tgccactgcg gccccggctt ct
//
LOCUS       XM_032606455            2889 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 16
            (ARHGEF16), mRNA.
ACCESSION   XM_032606455
VERSION     XM_032606455.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               VOSU01000011.1     2023848-2024082
            236-833             VOSU01000011.1     2030094-2030691
            834-879             VOSU01000011.1     2032367-2032412
            880-1016            VOSU01000011.1     2033513-2033649
            1017-1049           VOSU01000011.1     2033651-2033683
            1050-1106           VOSU01000011.1     2035336-2035392
            1107-1267           VOSU01000011.1     2035849-2036009
            1268-1420           VOSU01000011.1     2037020-2037172
            1421-1550           VOSU01000011.1     2037363-2037492
            1551-1625           VOSU01000011.1     2038279-2038353
            1626-1718           VOSU01000011.1     2038686-2038778
            1719-1870           VOSU01000011.1     2040627-2040778
            1871-2059           VOSU01000011.1     2040960-2041148
            2060-2133           VOSU01000011.1     2042008-2042081
            2134-2235           VOSU01000011.1     2042634-2042735
            2236-2889           VOSU01000011.1     2043271-2043924
FEATURES             Location/Qualifiers
     source          1..2889
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2889
                     /gene="ARHGEF16"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 18 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116740655"
     CDS             186..2375
                     /gene="ARHGEF16"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: rho guanine nucleotide
                     exchange factor 16"
                     /protein_id="XP_032462346.1"
                     /db_xref="GeneID:116740655"
                     /translation="MRTPSPHQTGTNSPPLWSPRPLSMSQQHSDSSLEEKLLEYRFHS
                     ELHLDTEGNPASGLPMVRGSLQSRSNAAFQPDAPVPPSPSPEPQELRTIVLSTQSPAA
                     LKMGTQQLIPRSLAVSSKAKTPARHQSFGAATLSKEAARRDPRLLPAPSFSLDDMDTG
                     PGGLLRRNLRNQSYRAAMKGLGTPGGEGGPVQLSPKIPALAEEPSQPPARSTAKNKKT
                     LGRKRAHKGSFKDDPRFYQEIRERGLNTIHESDDDLLDESSSPEETQKVDARIVVKSY
                     RPPQVTWSQLPEVVESGILDKLPAEEHERQEAIFEILTSEFSYQHSLGILVAEFLQSR
                     ELRATMTQTEHHHLFSNITDVLSASQRFFEDLEKRHRAQVCVEDVSDILEEHAERHFH
                     PYVSYCSNEVYQQRALQQLTSSSAAFREALREIEQRPACGGLPMISFLILPMQRVTRL
                     PLLTDTLCLKTQGHPERYKAASRALKAISKLVKQCNEGAHRMERMEQMYTLHTQLDFS
                     RVKSLPLISASRWLLKRGELFMVEETGLFRKLSSRPTCYLFLFNDVLVVTKKKSEDSF
                     VVQDYAQLDHIQVQKMEPSEASLPGGGNRSSFVPHAFQLTLLHNSEGRQEKILLSSDS
                     ASDRARWITALTRWERQQQDPTNKGDLLQVEITKAYLAKQADEITLQQADVVLVLEQE
                     DGWFYGERLRDGETGWFPEDLARSITSRVAVEGNMRRMERLRVETDV"
     misc_feature    1107..1643
                     /gene="ARHGEF16"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    1713..2096
                     /gene="ARHGEF16"
                     /note="Ephexin Pleckstrin homology (PH) domain; Region:
                     PH_ephexin; cd01221"
                     /db_xref="CDD:269929"
     misc_feature    2142..2300
                     /gene="ARHGEF16"
                     /note="Src homology 3 domain of the Rho guanine nucleotide
                     exchange factors ARHGEF16 and ARHGEF26; Region:
                     SH3_ARHGEF16_26; cd11938"
                     /db_xref="CDD:212871"
     misc_feature    order(2157..2159,2163..2165,2172..2174,2184..2186,
                     2235..2240,2283..2285,2289..2294)
                     /gene="ARHGEF16"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212871"
ORIGIN      
        1 ctccctcgcc ctggacggga ctcgcagcca gagctcccac tggggcatca gggctgagat
       61 taccctagag agccccagga cctttgaaaa ggcggggtgg ggtgcgcacg gaaacgaccc
      121 tcccagcaac tccggagaat ctgccgccca aacctgcttt ggcaccagga gtagcagccc
      181 caagaatgag gaccccctcc ccacatcaaa ctggaacaaa ctctccccca ctctggtcac
      241 cgcggccact cagcatgtcc cagcagcact cggacagctc cttggaggag aagctcctgg
      301 aataccgctt ccactcagag ctgcatctcg acaccgaggg aaacccagcg tccgggctcc
      361 cgatggtccg gggctccctg caaagcagga gcaatgccgc cttccagccc gatgccccgg
      421 tgcccccgtc gccgtcccct gagccccagg agctcaggac cattgtcctg agcacgcaga
      481 gcccggcagc cctcaagatg ggcactcagc agctgatccc ccggagcctg gctgtgtcca
      541 gcaaggctaa gaccccggcc cgccatcaga gctttggggc ggccacgctc agcaaagagg
      601 ctgcccggcg ggacccccgg ctcctcccgg cccccagctt ctccctggat gacatggaca
      661 cgggtcctgg ggggctgctg agacgaaatc tgaggaacca atcctaccgg gcggccatga
      721 aggggctggg gacccccggc ggcgagggcg gccccgtcca gctcagcccc aagatcccgg
      781 ctctggccga ggagcccagc cagcctcctg ctcggtccac ggccaaaaat aagaagacgc
      841 tggggcggaa acgtgcacac aagggctcct tcaaggacga tccccggttc taccaggaga
      901 tccgggagcg aggcctgaac accatccacg agtccgacga tgacttactc gatgaatcct
      961 ccagccctga ggaaacccaa aaggtggatg cccgcatcgt ggtcaagagc taccggcccc
     1021 cccaggtcac ctggagccag ctcccagagg tggtggagtc gggcatcctg gacaagctgc
     1081 ccgccgagga gcacgagagg caggaggcca tcttcgagat cctcacatcc gagttctcgt
     1141 accagcacag cctcggcatc ctggtggccg agttcctgca gtcccgggag ctgcgggcga
     1201 ccatgaccca gacagagcac caccacctct tctccaacat cacggacgtg ctgagcgcca
     1261 gccagaggtt cttcgaggac ctggagaagc ggcacagggc gcaggtgtgc gtggaggacg
     1321 tcagtgacat cctggaggag cacgccgagc ggcacttcca cccctacgtc tcctactgct
     1381 ccaacgaggt ctaccagcag cgcgccctgc agcagctgac gagcagcagc gctgccttcc
     1441 gagaggccct gagggagatc gagcaacggc ccgcgtgcgg gggtctgccc atgatctcct
     1501 tcctgatcct gcccatgcag agggtgaccc ggctgcccct cctgacggac acactctgcc
     1561 tcaagactca gggccacccc gagagataca aggccgccag ccgtgcactc aaggccatca
     1621 gcaagctggt gaagcagtgc aacgaggggg cccaccggat ggagcgcatg gagcagatgt
     1681 acacgctgca cacacaactg gacttcagta gggtcaagtc cctcccactg atctctgctt
     1741 cccgctggct gctgaagcgc ggggagctct tcatggtgga agaaaccggg cttttcagaa
     1801 aactctctag ccgaccgaca tgctacctgt tcctgttcaa cgacgtcctc gtggtcacca
     1861 agaagaagag tgaggacagc ttcgtggtcc aggactacgc ccagctggac cacatccagg
     1921 tccagaagat ggagccctcg gaggcctctc tgccaggggg cggcaaccgc agctcctttg
     1981 taccacacgc cttccagctg accctgctgc acaacagtga gggccgccag gagaagatcc
     2041 tgctatcctc cgactcagcg agtgaccgcg cgcggtggat cacagcactc acgcgctggg
     2101 agaggcagca gcaagacccc actaacaaag gagacctgct ccaggtggag atcaccaagg
     2161 cttacttggc caagcaggcg gatgagatca cactgcagca ggcagatgtg gtcctggtcc
     2221 tggagcaaga ggacggatgg ttctatggcg agaggctgcg ggatggagag acgggctggt
     2281 tccctgagga cttagcccgg agcatcacca gccgcgtggc cgtggagggc aacatgcgca
     2341 ggatggagcg gctgcgggtg gagacggacg tgtagccgga tctgccggca cctcgccagg
     2401 ccagactgcg gccgtgcagc ttcggtccac gctccagcaa gtggagtcca tccccaggga
     2461 gtgcagtggg cttgctccca gggcccgaaa gctccctggc ctcccaaggc cccgtgggct
     2521 gcagcgcagg ctccggacgt ttccaaggag gaaggccata cgccctcagg aggggcatcc
     2581 tcctggcaag ctcaggagcc cagccaggcc tgcttgctgg ccacgccgtc ccccagctcc
     2641 tggctgcccc gcccagctcc ctgtgcaccc acagggcagt tatgccatgg gcgagcgatc
     2701 gaggcggatg gccctgagaa gagcatgggt gacctggagg gctcgccctc ctgcacccct
     2761 cctgccccag ccttgagtac ccagggctgc cccatgttcc cagaggaggg ccagctgccg
     2821 gcaggtgacc ctgcagagcc agcactggaa ttgtgacttt gagacattaa agtacttctt
     2881 tagcacctg
//
LOCUS       XM_032606469            6067 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus IQ motif containing GTPase activating
            protein 3 (IQGAP3), transcript variant X1, mRNA.
ACCESSION   XM_032606469
VERSION     XM_032606469.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6067
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6067
                     /gene="IQGAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740663"
     CDS             34..5043
                     /gene="IQGAP3"
                     /codon_start=1
                     /product="ras GTPase-activating-like protein IQGAP3
                     isoform X1"
                     /protein_id="XP_032462360.1"
                     /db_xref="GeneID:116740663"
                     /translation="MEGRGTGPSRATYERLTAEEMDEQRRQNVAYEYLCRLEEAKRWM
                     EACLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDVEQLRYQATGLHFRH
                     TDNINFWLSAVAHIGLPSTFLPETTDIYDKKNMPRVVYCIHALSLFLFRLGLAPQIHD
                     LYGKVKFTAEELSNMASELAKYGLQLPAFSKIGGILANELSVDEAAVHAAVLAINEAV
                     ERGVVKDTLAALQNPSALLGNLREPLAAIYQELLAQAKMEKAANARNRFLQNDGESQD
                     IYDCYLTQAEIQGNINHVNVHGALEVVDDALERQSPEALLEALQDPVLALQGVRRDLA
                     DWYLEQLSSDREQKAQELGLVELLEKEEVQAGVAAANIKCDQEQAMLQAVQRINKAIR
                     RGVAADTVKELMCPEAQLPPVYPFASAVYQQELAVLQRQQRGELGQEELFVAVEMLSA
                     VVLINRALEARDASSFWSSLVNPATGLAEVEGENAQRYFDTLVKLQQVHGMDGAFLSW
                     NDLQATVSQVNAQVQEETNREWSPGLGEDGPMRTAPSLSHKSGPSAHLYLSFPEVLAV
                     SLINEALEQNNPEKTLSSLLLPAAGLDDVSLPVAPRYHLLLVAAKKQKAQVTGDPGAA
                     LWLEEIRQEVVRANQDTNTAQRMALGVAAINQAIKEGKAAQTERVLRNPSVGLRGVVP
                     DCADGYQQVLEDAMAKKRRPGDTALWVQHDMKDGTAYYFHLQTFQGTWERPSGCRLNT
                     SHLTREEIQLAVTKITAAHDRQQLWKANVGFIIRLQACLRGFLVRQKFAERSHFLRTW
                     LPAVIKIQAHWRGYRQRKIYLERLQYLKAKTNAIIKIQAWARMWAARRRYRRRLGYFQ
                     KNVNSIVKIQAFFRARKARDDYRMLVHVPHPPLSVVRRFAHLLNQSHQDFLAEAELLK
                     LQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMM
                     VLDKQKGLKSLSKEKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNKTTKFMESVIFS
                     LYNYASNRREAYLLLQLFKTALQEEIKSKVEQPQDMVTGNPTVVRLVVRFYRNGRGQS
                     ALREILGKVIQDVLEDKMLSIHTDPVHLYKSWINQTEAQTGQRSHLPYDITPEQALSH
                     PEVQRRLDISLRNLLAMTDKFLAAIISSADQIPYGMRYVAKVLKTTLAEKFPDATENE
                     VYKVVGNLLYYRFLNPAVVAPDAFDIVAMAAGGALATPQRHALGAVAQVLQHAAAGKA
                     FSRESQHLRVLNDYLEETHLKFRRFICRACHVPEPEERFAMDEYSDMVAVAKPVVYIT
                     VGELVNTHRLLLEHQDWIAPDHRDPLHELLEDLGELPTVPDLIGENVAADGNVDLSKL
                     EVSLTLTNKFEGLETDADDNNAQSLLLSTKQMLADIMQFHSGDSLKEILSLSASREQE
                     AAHKRLMCRRQACEAQTPVSLRRHRSLTAHSLLPLAEKQQRVLRNLRRLEGLALVSAS
                     DGYQGLVDELAKDIRNQRRHRQRRKAELVKLQATFQALSTKATFYEEQGDYYSQYIRA
                     CLDHLAPSSKSSGKGKKQPSLHYTAAQLLEKGVLVEIEDLPTSHFRNVIFDITPGDEA
                     GKFEVNAKFLGVDMERFQLHYQDLLQLQYEGVAVMKLFSKAKVNVNLLIFLLNKKFLR
                     K"
     misc_feature    115..570
                     /gene="IQGAP3"
                     /note="calponin homology (CH) domain superfamily; Region:
                     CH_SF; cl00030"
                     /db_xref="CDD:469584"
     misc_feature    order(151..153,334..336,340..345,352..357,361..363,
                     403..417,433..435,439..444,448..453,460..465,472..474)
                     /gene="IQGAP3"
                     /note="actin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409031"
     misc_feature    2155..2232
                     /gene="IQGAP3"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; Region: WW; cd00201"
                     /db_xref="CDD:238122"
     misc_feature    order(2188..2190,2221..2223)
                     /gene="IQGAP3"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     misc_feature    <2245..>3018
                     /gene="IQGAP3"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <2764..5040
                     /gene="IQGAP3"
                     /note="Protein involved in regulation of cellular
                     morphogenesis/cytokinesis [Cell division and chromosome
                     partitioning / Signal transduction mechanisms]; Region:
                     IQG1; COG5261"
                     /db_xref="CDD:227586"
     misc_feature    3106..4155
                     /gene="IQGAP3"
                     /note="Ras-GTPase Activating Domain of IQ motif containing
                     GTPase activating protein 3; Region: RasGAP_IQGAP3;
                     cd12207"
                     /db_xref="CDD:213346"
     misc_feature    order(3238..3240,3331..3333,3337..3339,3343..3348,
                     3355..3357,3364..3366,3376..3378,3652..3654,3676..3681,
                     3688..3693,3700..3702,3775..3777,3784..3789,3796..3798,
                     3808..3810,3814..3816,3829..3834)
                     /gene="IQGAP3"
                     /note="putative RAS interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:213346"
ORIGIN      
        1 ggcgggagat tcaaacctgg aagaaggaga aacatggagg ggagaggaac gggcccgtcc
       61 cgggcgacct atgaacgcct cacagctgag gaaatggatg agcagaggcg gcagaacgtc
      121 gcctatgagt acctgtgccg gctggaggaa gccaagcgct ggatggaggc ctgcctgaag
      181 gaggagcttc cttccccggt ggagctggag gagagcctcc ggaacggagt gctgctggcc
      241 aagctgggcc actgttttgc accctctgtg gttcccttga agaagatcta tgacgtggag
      301 cagctacggt accaggcaac tggcttgcat ttccgtcaca cagacaacat caacttttgg
      361 ctgtctgcag tagcccacat cggtctgcct tcgaccttct tgccagagac cacggacatt
      421 tatgacaaga agaacatgcc ccgggtggtc tactgcatcc atgcactcag tctcttcctc
      481 ttccggctgg gattggcccc tcagatacat gatctatatg ggaaagtgaa attcacagct
      541 gaggaactca gcaacatggc ctctgaacta gctaaatatg gcctccagct gcctgccttc
      601 agcaagatcg ggggcatcct ggccaatgaa ctctcggtgg atgaggctgc agtccatgca
      661 gctgttcttg ccatcaatga ggcagtggag cgaggagtgg tcaaggacac cctggctgcc
      721 ttgcagaatc ccagtgctct gctggggaat cttcgagagc ctctggcagc catctaccag
      781 gagctgctgg cccaggccaa gatggagaag gctgccaatg ccaggaaccg ctttttgcag
      841 aatgatggag aaagccagga catctatgac tgctacctaa ctcaggctga aatccagggc
      901 aacatcaacc atgtcaatgt ccatggggct ctagaagttg ttgatgatgc cctggaaaga
      961 cagagccctg aggccttgct tgaggccctt caagaccctg tcctggccct gcaaggagtg
     1021 aggagagacc ttgcagactg gtacctggaa cagctgagct cagacagaga gcagaaagca
     1081 caggagctgg gcctggtgga gcttctggaa aaggaggagg tccaagctgg tgtggctgca
     1141 gccaacataa agtgtgatca ggaacaagcc atgctccagg ccgtgcagag gatcaacaaa
     1201 gccatccgga ggggagtggc agctgacacc gtgaaggagc tgatgtgccc agaagcccag
     1261 ctgcctccag tgtacccctt tgcatcagct gtgtaccagc aggagctggc agtgctccag
     1321 cggcagcagc ggggggagct tggccaggag gagctcttcg tggccgtgga gatgctctca
     1381 gccgtggtcc tgatcaaccg agctctggag gccagggatg ccagcagctt ctggagcagt
     1441 ctggtgaacc ccgccacagg gctggccgag gtggaaggag agaatgctca acggtacttt
     1501 gatactctgg taaagctgca acaggtgcat ggaatggatg gggccttcct gagctggaat
     1561 gatctccagg ccactgtgag tcaggtcaac gcccaggtcc aggaagagac caatcgtgag
     1621 tggagtccag gactggggga agatggccca atgcggacag ccccatccct tagccataag
     1681 tctgggccct ctgcccacct atatctctct ttcccagagg tccttgcggt cagcctcatc
     1741 aatgaggctc tggaacagaa caaccctgaa aagaccctct cctcccttct gcttcctgcg
     1801 gctggcctgg acgatgtcag ccttcctgtc gccccacggt accatctcct cctcgtggcg
     1861 gccaaaaagc agaaggccca ggtgacaggg gatcctggag ctgcactatg gctggaagag
     1921 atccgccagg aagtggttag agccaaccag gacacaaaca cagctcagag gatggctctt
     1981 ggtgtggccg ccatcaatca ggccatcaag gagggcaagg cagcccagac agaacgggtg
     2041 ttaagaaacc cctccgtggg cctccgaggg gtggttcctg actgtgctga cggctaccag
     2101 caagtcctgg aagatgccat ggcaaagaag cggcgcccag gggatacagc gctctgggtt
     2161 caacatgaca tgaaggatgg taccgcctac tacttccatc tgcagacctt ccaggggacc
     2221 tgggagcgac cctccggctg ccgcctcaac acctcccacc tgactcggga ggagatccag
     2281 ttggccgtca ccaagatcac cgctgcccac gaccgccaac agctctggaa ggccaatgtg
     2341 ggcttcatta tccggctcca ggcctgcctc cgcggcttcc ttgttcggca gaagtttgct
     2401 gaacgttccc actttctgag gacctggctc ccagcagtca tcaaaatcca ggctcattgg
     2461 cggggttaca gacagcggaa gatttacctg gaacggttgc agtatttaaa agcaaaaacg
     2521 aatgctataa tcaagatcca ggcttgggcc cggatgtggg cagctcggag gcgataccgg
     2581 aggcgtctgg gctacttcca gaagaatgtt aactccatcg tgaagatcca ggcatttttc
     2641 cgagccagga aagcccggga tgactacagg atgttagtcc acgtgcccca tccccctctg
     2701 agcgtggtac gcagatttgc ccacctcttg aatcaaagcc accaggactt cttggctgag
     2761 gcagagctgc tgaagctcca ggaagaggtg gtcaggaaga tccggtccaa tcagcagctg
     2821 gagcaggacc tcaatctcat ggacatcaag attggcctgc tggtgaagaa tcggatcacc
     2881 ctgcaggaag tggtctccca ctgcaagaag ctgaccaaga agaataagga acagctgtca
     2941 gatatgatgg ttctggacaa gcagaaggga ttaaagtcgc tgagcaaaga gaaacggcag
     3001 aaactagaag cttaccaaca cctcttctac ctgctccaga ctcaacccat ctacctggcc
     3061 aagctgatct ttcagatgcc gcagaacaaa accaccaagt tcatggaatc agtgattttc
     3121 agtctataca actatgcctc caaccgccga gaggcctatc tcctgctcca gctgttcaag
     3181 acagcactcc aggaggaaat caagtcgaag gtggagcagc cccaggacat ggtgacaggc
     3241 aacccaacgg tggtgaggct ggtggtgaga ttctatcgta acgggcgggg gcaaagtgcc
     3301 ctgcgggaga tcctgggcaa ggtgatccag gatgtgctgg aggacaagat gctcagcatc
     3361 cacacagacc ctgtccacct ctacaagagc tggatcaacc agaccgaggc ccagacaggg
     3421 cagcgcagcc acctccccta tgacatcacc ccagagcagg ccttgagcca ccccgaggtc
     3481 cagagacgac tggacatctc cctccgcaac ctccttgcca tgaccgataa attccttgca
     3541 gccatcatct catctgcgga ccaaattccg tatgggatgc gatacgtggc caaggtcctg
     3601 aagacaactc tggcagagaa gttccccgac gccacagaga atgaggtcta taaggtcgta
     3661 gggaacctcc tgtactaccg cttcctgaac ccggctgtag tggcccccga cgccttcgac
     3721 attgtggcca tggcagcagg cggcgccctg gccacccccc agcgccacgc cctgggggct
     3781 gtggctcaag tcctgcagca tgctgcagcc ggcaaggcct tctccaggga gagccagcac
     3841 ctgcgggtct tgaacgacta tctggaggag acacacctca agttcaggag gttcatctgc
     3901 cgagcctgcc acgtgccaga gccagaagag cgctttgcga tggatgagta ctcagacatg
     3961 gtggctgtgg ccaaacctgt ggtgtacatc accgtggggg agctggtcaa cacgcacagg
     4021 ctgttgctag aacaccagga ctggatcgcc cctgatcacc gcgaccccct gcatgagctc
     4081 ctggaggacc ttggggagct gcccaccgtc cctgacctca tcggggagaa cgtagctgcg
     4141 gatgggaacg tggatctgag caagctagaa gtgtccctga cactgaccaa caagtttgaa
     4201 gggctggaga cagatgctga cgacaacaac gcccagagcc tgcttctgag caccaagcag
     4261 atgctggctg acatcatgca gttccactct ggggattccc tcaaggagat cctgtccctc
     4321 tcggcctcca gagagcagga agcagcccac aagcggctga tgtgccgacg ccaggcctgt
     4381 gaagcccaga ccccagtgtc gctgcgacga caccgctcgc tgacagctca ctccctcctg
     4441 ccgctggcag agaagcaaca gcgtgtcctg cggaacctgc gccgactcga gggcctggct
     4501 ttggtcagcg ccagcgacgg ctaccagggg ctggtagacg aactggccaa ggacatccgc
     4561 aaccagcgca ggcaccggca gcggcggaag gcagagctgg tgaagctcca ggccacgttc
     4621 caggccctga gcactaaggc caccttttat gaggagcagg gcgactacta cagccagtac
     4681 atccgggcct gcctggacca cctggccccc agctccaaga gttctgggaa agggaagaag
     4741 cagccatctc tccattacac tgctgcccag ctcctggaga agggtgtctt ggtggaaatt
     4801 gaagatcttc ccacctctca cttcagaaat gtgatctttg acatcacccc tggagatgag
     4861 gcaggaaagt tcgaagtaaa tgccaagttc ctgggtgtgg acatggagcg atttcagctt
     4921 cactatcagg acctcctgca gctccaatac gagggtgtgg ctgtcatgaa actcttcagc
     4981 aaggccaagg tcaacgtcaa ccttctcatc ttcctcctca acaagaaatt cttgcggaag
     5041 tgacagaggc agtgggtgct acccaagcct gtcttacctc gctggatgct tttcttaaca
     5101 ctaatgcact attccacttc cctgcagaca cccagagctc aggactgggc agggctcgag
     5161 gagtctcacc ctttgcccag ctgggaggag tttgtctacc tgggcacagg cagggactct
     5221 aattggctca agcgaaccct gtctctgagt ctggctgtgt ggctttgaag tcccagaacc
     5281 cgacggtttt ccagccggac ggtagggaat gaacctaggg cctgcccttt gacctgagaa
     5341 agctattgct cttggtctgc tgctgccctc ccaataccgt gagcactgcc ccagcggcct
     5401 gatttcctgc tgcctccctt ccctttgcag accccaaagc cagggggtcc ctgtccccac
     5461 tcccacttca tcagcagtgt gtgttcctgc cctgctgaag cccaggccac tctgtgacgc
     5521 ctcacaccct ccagcccgtc accctcacac cgggtggaca gcgctcgtga atgcccatgt
     5581 ggcattgtga cacggttgcc gtccgaggcg gcctaggcaa gatgaccctc cgttaacctc
     5641 aaatctcatt cccttgttta cagtctgttt tacatgcggg tcactagggt atttattctc
     5701 tcctacccct atactctgtg cagccttaat catggctttc tttctttttg agctcagaga
     5761 aagggttccc atttccctgt tcaaactaat attcatgcca atcttttata ccttgtatat
     5821 aaagtcacct tggatcactc gtgcttaaga tctcattact tcagcttcat acggtacaaa
     5881 gagcagtctt ccccttttct ctctcaccct caggattctt gcaccttaga gctgactctt
     5941 ccaggcagtt tccatagatc tgccgtcttg tctcagccac tgtctctctc ttgtccccac
     6001 atctacccag cttcctgtcc ctgtggccct tctgatttca ttttaataaa agcagctgtt
     6061 accccca
//
LOCUS       XM_032606477            6058 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus IQ motif containing GTPase activating
            protein 3 (IQGAP3), transcript variant X2, mRNA.
ACCESSION   XM_032606477
VERSION     XM_032606477.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6058
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6058
                     /gene="IQGAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 10 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740663"
     CDS             34..5034
                     /gene="IQGAP3"
                     /codon_start=1
                     /product="ras GTPase-activating-like protein IQGAP3
                     isoform X2"
                     /protein_id="XP_032462368.1"
                     /db_xref="GeneID:116740663"
                     /translation="MEGRGTGPSRATYERLTAEEMDEQRRQNVAYEYLCRLEEAKRWM
                     EACLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDVEQLRYQATGLHFRH
                     TDNINFWLSAVAHIGLPSTFLPETTDIYDKKNMPRVVYCIHALSLFLFRLGLAPQIHD
                     LYGKVKFTAEELSNMASELAKYGLQLPAFSKIGGILANELSVDEAAVHAAVLAINEAV
                     ERGVVKDTLAALQNPSALLGNLREPLAAIYQELLAQAKMEKAANARNRNDGESQDIYD
                     CYLTQAEIQGNINHVNVHGALEVVDDALERQSPEALLEALQDPVLALQGVRRDLADWY
                     LEQLSSDREQKAQELGLVELLEKEEVQAGVAAANIKCDQEQAMLQAVQRINKAIRRGV
                     AADTVKELMCPEAQLPPVYPFASAVYQQELAVLQRQQRGELGQEELFVAVEMLSAVVL
                     INRALEARDASSFWSSLVNPATGLAEVEGENAQRYFDTLVKLQQVHGMDGAFLSWNDL
                     QATVSQVNAQVQEETNREWSPGLGEDGPMRTAPSLSHKSGPSAHLYLSFPEVLAVSLI
                     NEALEQNNPEKTLSSLLLPAAGLDDVSLPVAPRYHLLLVAAKKQKAQVTGDPGAALWL
                     EEIRQEVVRANQDTNTAQRMALGVAAINQAIKEGKAAQTERVLRNPSVGLRGVVPDCA
                     DGYQQVLEDAMAKKRRPGDTALWVQHDMKDGTAYYFHLQTFQGTWERPSGCRLNTSHL
                     TREEIQLAVTKITAAHDRQQLWKANVGFIIRLQACLRGFLVRQKFAERSHFLRTWLPA
                     VIKIQAHWRGYRQRKIYLERLQYLKAKTNAIIKIQAWARMWAARRRYRRRLGYFQKNV
                     NSIVKIQAFFRARKARDDYRMLVHVPHPPLSVVRRFAHLLNQSHQDFLAEAELLKLQE
                     EVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMMVLD
                     KQKGLKSLSKEKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNKTTKFMESVIFSLYN
                     YASNRREAYLLLQLFKTALQEEIKSKVEQPQDMVTGNPTVVRLVVRFYRNGRGQSALR
                     EILGKVIQDVLEDKMLSIHTDPVHLYKSWINQTEAQTGQRSHLPYDITPEQALSHPEV
                     QRRLDISLRNLLAMTDKFLAAIISSADQIPYGMRYVAKVLKTTLAEKFPDATENEVYK
                     VVGNLLYYRFLNPAVVAPDAFDIVAMAAGGALATPQRHALGAVAQVLQHAAAGKAFSR
                     ESQHLRVLNDYLEETHLKFRRFICRACHVPEPEERFAMDEYSDMVAVAKPVVYITVGE
                     LVNTHRLLLEHQDWIAPDHRDPLHELLEDLGELPTVPDLIGENVAADGNVDLSKLEVS
                     LTLTNKFEGLETDADDNNAQSLLLSTKQMLADIMQFHSGDSLKEILSLSASREQEAAH
                     KRLMCRRQACEAQTPVSLRRHRSLTAHSLLPLAEKQQRVLRNLRRLEGLALVSASDGY
                     QGLVDELAKDIRNQRRHRQRRKAELVKLQATFQALSTKATFYEEQGDYYSQYIRACLD
                     HLAPSSKSSGKGKKQPSLHYTAAQLLEKGVLVEIEDLPTSHFRNVIFDITPGDEAGKF
                     EVNAKFLGVDMERFQLHYQDLLQLQYEGVAVMKLFSKAKVNVNLLIFLLNKKFLRK"
     misc_feature    115..570
                     /gene="IQGAP3"
                     /note="calponin homology (CH) domain superfamily; Region:
                     CH_SF; cl00030"
                     /db_xref="CDD:469584"
     misc_feature    order(151..153,334..336,340..345,352..357,361..363,
                     403..417,433..435,439..444,448..453,460..465,472..474)
                     /gene="IQGAP3"
                     /note="actin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409031"
     misc_feature    2146..2223
                     /gene="IQGAP3"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; Region: WW; cd00201"
                     /db_xref="CDD:238122"
     misc_feature    order(2179..2181,2212..2214)
                     /gene="IQGAP3"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     misc_feature    <2236..>3009
                     /gene="IQGAP3"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <2755..5031
                     /gene="IQGAP3"
                     /note="Protein involved in regulation of cellular
                     morphogenesis/cytokinesis [Cell division and chromosome
                     partitioning / Signal transduction mechanisms]; Region:
                     IQG1; COG5261"
                     /db_xref="CDD:227586"
     misc_feature    3097..4146
                     /gene="IQGAP3"
                     /note="Ras-GTPase Activating Domain of IQ motif containing
                     GTPase activating protein 3; Region: RasGAP_IQGAP3;
                     cd12207"
                     /db_xref="CDD:213346"
     misc_feature    order(3229..3231,3322..3324,3328..3330,3334..3339,
                     3346..3348,3355..3357,3367..3369,3643..3645,3667..3672,
                     3679..3684,3691..3693,3766..3768,3775..3780,3787..3789,
                     3799..3801,3805..3807,3820..3825)
                     /gene="IQGAP3"
                     /note="putative RAS interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:213346"
ORIGIN      
        1 ggcgggagat tcaaacctgg aagaaggaga aacatggagg ggagaggaac gggcccgtcc
       61 cgggcgacct atgaacgcct cacagctgag gaaatggatg agcagaggcg gcagaacgtc
      121 gcctatgagt acctgtgccg gctggaggaa gccaagcgct ggatggaggc ctgcctgaag
      181 gaggagcttc cttccccggt ggagctggag gagagcctcc ggaacggagt gctgctggcc
      241 aagctgggcc actgttttgc accctctgtg gttcccttga agaagatcta tgacgtggag
      301 cagctacggt accaggcaac tggcttgcat ttccgtcaca cagacaacat caacttttgg
      361 ctgtctgcag tagcccacat cggtctgcct tcgaccttct tgccagagac cacggacatt
      421 tatgacaaga agaacatgcc ccgggtggtc tactgcatcc atgcactcag tctcttcctc
      481 ttccggctgg gattggcccc tcagatacat gatctatatg ggaaagtgaa attcacagct
      541 gaggaactca gcaacatggc ctctgaacta gctaaatatg gcctccagct gcctgccttc
      601 agcaagatcg ggggcatcct ggccaatgaa ctctcggtgg atgaggctgc agtccatgca
      661 gctgttcttg ccatcaatga ggcagtggag cgaggagtgg tcaaggacac cctggctgcc
      721 ttgcagaatc ccagtgctct gctggggaat cttcgagagc ctctggcagc catctaccag
      781 gagctgctgg cccaggccaa gatggagaag gctgccaatg ccaggaaccg caatgatgga
      841 gaaagccagg acatctatga ctgctaccta actcaggctg aaatccaggg caacatcaac
      901 catgtcaatg tccatggggc tctagaagtt gttgatgatg ccctggaaag acagagccct
      961 gaggccttgc ttgaggccct tcaagaccct gtcctggccc tgcaaggagt gaggagagac
     1021 cttgcagact ggtacctgga acagctgagc tcagacagag agcagaaagc acaggagctg
     1081 ggcctggtgg agcttctgga aaaggaggag gtccaagctg gtgtggctgc agccaacata
     1141 aagtgtgatc aggaacaagc catgctccag gccgtgcaga ggatcaacaa agccatccgg
     1201 aggggagtgg cagctgacac cgtgaaggag ctgatgtgcc cagaagccca gctgcctcca
     1261 gtgtacccct ttgcatcagc tgtgtaccag caggagctgg cagtgctcca gcggcagcag
     1321 cggggggagc ttggccagga ggagctcttc gtggccgtgg agatgctctc agccgtggtc
     1381 ctgatcaacc gagctctgga ggccagggat gccagcagct tctggagcag tctggtgaac
     1441 cccgccacag ggctggccga ggtggaagga gagaatgctc aacggtactt tgatactctg
     1501 gtaaagctgc aacaggtgca tggaatggat ggggccttcc tgagctggaa tgatctccag
     1561 gccactgtga gtcaggtcaa cgcccaggtc caggaagaga ccaatcgtga gtggagtcca
     1621 ggactggggg aagatggccc aatgcggaca gccccatccc ttagccataa gtctgggccc
     1681 tctgcccacc tatatctctc tttcccagag gtccttgcgg tcagcctcat caatgaggct
     1741 ctggaacaga acaaccctga aaagaccctc tcctcccttc tgcttcctgc ggctggcctg
     1801 gacgatgtca gccttcctgt cgccccacgg taccatctcc tcctcgtggc ggccaaaaag
     1861 cagaaggccc aggtgacagg ggatcctgga gctgcactat ggctggaaga gatccgccag
     1921 gaagtggtta gagccaacca ggacacaaac acagctcaga ggatggctct tggtgtggcc
     1981 gccatcaatc aggccatcaa ggagggcaag gcagcccaga cagaacgggt gttaagaaac
     2041 ccctccgtgg gcctccgagg ggtggttcct gactgtgctg acggctacca gcaagtcctg
     2101 gaagatgcca tggcaaagaa gcggcgccca ggggatacag cgctctgggt tcaacatgac
     2161 atgaaggatg gtaccgccta ctacttccat ctgcagacct tccaggggac ctgggagcga
     2221 ccctccggct gccgcctcaa cacctcccac ctgactcggg aggagatcca gttggccgtc
     2281 accaagatca ccgctgccca cgaccgccaa cagctctgga aggccaatgt gggcttcatt
     2341 atccggctcc aggcctgcct ccgcggcttc cttgttcggc agaagtttgc tgaacgttcc
     2401 cactttctga ggacctggct cccagcagtc atcaaaatcc aggctcattg gcggggttac
     2461 agacagcgga agatttacct ggaacggttg cagtatttaa aagcaaaaac gaatgctata
     2521 atcaagatcc aggcttgggc ccggatgtgg gcagctcgga ggcgataccg gaggcgtctg
     2581 ggctacttcc agaagaatgt taactccatc gtgaagatcc aggcattttt ccgagccagg
     2641 aaagcccggg atgactacag gatgttagtc cacgtgcccc atccccctct gagcgtggta
     2701 cgcagatttg cccacctctt gaatcaaagc caccaggact tcttggctga ggcagagctg
     2761 ctgaagctcc aggaagaggt ggtcaggaag atccggtcca atcagcagct ggagcaggac
     2821 ctcaatctca tggacatcaa gattggcctg ctggtgaaga atcggatcac cctgcaggaa
     2881 gtggtctccc actgcaagaa gctgaccaag aagaataagg aacagctgtc agatatgatg
     2941 gttctggaca agcagaaggg attaaagtcg ctgagcaaag agaaacggca gaaactagaa
     3001 gcttaccaac acctcttcta cctgctccag actcaaccca tctacctggc caagctgatc
     3061 tttcagatgc cgcagaacaa aaccaccaag ttcatggaat cagtgatttt cagtctatac
     3121 aactatgcct ccaaccgccg agaggcctat ctcctgctcc agctgttcaa gacagcactc
     3181 caggaggaaa tcaagtcgaa ggtggagcag ccccaggaca tggtgacagg caacccaacg
     3241 gtggtgaggc tggtggtgag attctatcgt aacgggcggg ggcaaagtgc cctgcgggag
     3301 atcctgggca aggtgatcca ggatgtgctg gaggacaaga tgctcagcat ccacacagac
     3361 cctgtccacc tctacaagag ctggatcaac cagaccgagg cccagacagg gcagcgcagc
     3421 cacctcccct atgacatcac cccagagcag gccttgagcc accccgaggt ccagagacga
     3481 ctggacatct ccctccgcaa cctccttgcc atgaccgata aattccttgc agccatcatc
     3541 tcatctgcgg accaaattcc gtatgggatg cgatacgtgg ccaaggtcct gaagacaact
     3601 ctggcagaga agttccccga cgccacagag aatgaggtct ataaggtcgt agggaacctc
     3661 ctgtactacc gcttcctgaa cccggctgta gtggcccccg acgccttcga cattgtggcc
     3721 atggcagcag gcggcgccct ggccaccccc cagcgccacg ccctgggggc tgtggctcaa
     3781 gtcctgcagc atgctgcagc cggcaaggcc ttctccaggg agagccagca cctgcgggtc
     3841 ttgaacgact atctggagga gacacacctc aagttcagga ggttcatctg ccgagcctgc
     3901 cacgtgccag agccagaaga gcgctttgcg atggatgagt actcagacat ggtggctgtg
     3961 gccaaacctg tggtgtacat caccgtgggg gagctggtca acacgcacag gctgttgcta
     4021 gaacaccagg actggatcgc ccctgatcac cgcgaccccc tgcatgagct cctggaggac
     4081 cttggggagc tgcccaccgt ccctgacctc atcggggaga acgtagctgc ggatgggaac
     4141 gtggatctga gcaagctaga agtgtccctg acactgacca acaagtttga agggctggag
     4201 acagatgctg acgacaacaa cgcccagagc ctgcttctga gcaccaagca gatgctggct
     4261 gacatcatgc agttccactc tggggattcc ctcaaggaga tcctgtccct ctcggcctcc
     4321 agagagcagg aagcagccca caagcggctg atgtgccgac gccaggcctg tgaagcccag
     4381 accccagtgt cgctgcgacg acaccgctcg ctgacagctc actccctcct gccgctggca
     4441 gagaagcaac agcgtgtcct gcggaacctg cgccgactcg agggcctggc tttggtcagc
     4501 gccagcgacg gctaccaggg gctggtagac gaactggcca aggacatccg caaccagcgc
     4561 aggcaccggc agcggcggaa ggcagagctg gtgaagctcc aggccacgtt ccaggccctg
     4621 agcactaagg ccacctttta tgaggagcag ggcgactact acagccagta catccgggcc
     4681 tgcctggacc acctggcccc cagctccaag agttctggga aagggaagaa gcagccatct
     4741 ctccattaca ctgctgccca gctcctggag aagggtgtct tggtggaaat tgaagatctt
     4801 cccacctctc acttcagaaa tgtgatcttt gacatcaccc ctggagatga ggcaggaaag
     4861 ttcgaagtaa atgccaagtt cctgggtgtg gacatggagc gatttcagct tcactatcag
     4921 gacctcctgc agctccaata cgagggtgtg gctgtcatga aactcttcag caaggccaag
     4981 gtcaacgtca accttctcat cttcctcctc aacaagaaat tcttgcggaa gtgacagagg
     5041 cagtgggtgc tacccaagcc tgtcttacct cgctggatgc ttttcttaac actaatgcac
     5101 tattccactt ccctgcagac acccagagct caggactggg cagggctcga ggagtctcac
     5161 cctttgccca gctgggagga gtttgtctac ctgggcacag gcagggactc taattggctc
     5221 aagcgaaccc tgtctctgag tctggctgtg tggctttgaa gtcccagaac ccgacggttt
     5281 tccagccgga cggtagggaa tgaacctagg gcctgccctt tgacctgaga aagctattgc
     5341 tcttggtctg ctgctgccct cccaataccg tgagcactgc cccagcggcc tgatttcctg
     5401 ctgcctccct tccctttgca gaccccaaag ccagggggtc cctgtcccca ctcccacttc
     5461 atcagcagtg tgtgttcctg ccctgctgaa gcccaggcca ctctgtgacg cctcacaccc
     5521 tccagcccgt caccctcaca ccgggtggac agcgctcgtg aatgcccatg tggcattgtg
     5581 acacggttgc cgtccgaggc ggcctaggca agatgaccct ccgttaacct caaatctcat
     5641 tcccttgttt acagtctgtt ttacatgcgg gtcactaggg tatttattct ctcctacccc
     5701 tatactctgt gcagccttaa tcatggcttt ctttcttttt gagctcagag aaagggttcc
     5761 catttccctg ttcaaactaa tattcatgcc aatcttttat accttgtata taaagtcacc
     5821 ttggatcact cgtgcttaag atctcattac ttcagcttca tacggtacaa agagcagtct
     5881 tccccttttc tctctcaccc tcaggattct tgcaccttag agctgactct tccaggcagt
     5941 ttccatagat ctgccgtctt gtctcagcca ctgtctctct cttgtcccca catctaccca
     6001 gcttcctgtc cctgtggccc ttctgatttc attttaataa aagcagctgt taccccca
//
LOCUS       XM_032606484            5965 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus IQ motif containing GTPase activating
            protein 3 (IQGAP3), transcript variant X3, mRNA.
ACCESSION   XM_032606484
VERSION     XM_032606484.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5965
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5965
                     /gene="IQGAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 12 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740663"
     CDS             34..4941
                     /gene="IQGAP3"
                     /codon_start=1
                     /product="ras GTPase-activating-like protein IQGAP3
                     isoform X3"
                     /protein_id="XP_032462375.1"
                     /db_xref="GeneID:116740663"
                     /translation="MEGRGTGPSRATYERLTAEEMDEQRRQNVAYEYLCRLEEAKRWM
                     EACLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDVEQLRYQATGLHFRH
                     TDNINFWLSAVAHIGLPSTFLPETTDIYDKKNMPRVVYCIHALSLFLFRLGLAPQIHD
                     LYGKVKFTAEELSNMASELAKYGLQLPAFSKIGGILANELSVDEAAVHAAVLAINEAV
                     ERGVVKDTLAALQNPSALLGNLREPLAAIYQELLAQAKMEKAANARNRFLQNDGESQD
                     IYDCYLTQAEIQGNINHVNVHGALEVVDDALERQSPEALLEALQDPVLALQGVRRDLA
                     DWYLEQLSSDREQKAQELGLVELLEKEEVQAGVAAANIKCDQEQAMLQAVQRINKAIR
                     RGVAADTVKELMCPEAQLPPVYPFASAVYQQELAVLQRQQRGELGQEELFVAVEMLSA
                     VVLINRALEARDASSFWSSLVNPATGLAEVEGENAQRYFDTLVKLQQVHGMDGAFLSW
                     NDLQATVSQVNAQVQEETNQVLAVSLINEALEQNNPEKTLSSLLLPAAGLDDVSLPVA
                     PRYHLLLVAAKKQKAQVTGDPGAALWLEEIRQEVVRANQDTNTAQRMALGVAAINQAI
                     KEGKAAQTERVLRNPSVGLRGVVPDCADGYQQVLEDAMAKKRRPGDTALWVQHDMKDG
                     TAYYFHLQTFQGTWERPSGCRLNTSHLTREEIQLAVTKITAAHDRQQLWKANVGFIIR
                     LQACLRGFLVRQKFAERSHFLRTWLPAVIKIQAHWRGYRQRKIYLERLQYLKAKTNAI
                     IKIQAWARMWAARRRYRRRLGYFQKNVNSIVKIQAFFRARKARDDYRMLVHVPHPPLS
                     VVRRFAHLLNQSHQDFLAEAELLKLQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRI
                     TLQEVVSHCKKLTKKNKEQLSDMMVLDKQKGLKSLSKEKRQKLEAYQHLFYLLQTQPI
                     YLAKLIFQMPQNKTTKFMESVIFSLYNYASNRREAYLLLQLFKTALQEEIKSKVEQPQ
                     DMVTGNPTVVRLVVRFYRNGRGQSALREILGKVIQDVLEDKMLSIHTDPVHLYKSWIN
                     QTEAQTGQRSHLPYDITPEQALSHPEVQRRLDISLRNLLAMTDKFLAAIISSADQIPY
                     GMRYVAKVLKTTLAEKFPDATENEVYKVVGNLLYYRFLNPAVVAPDAFDIVAMAAGGA
                     LATPQRHALGAVAQVLQHAAAGKAFSRESQHLRVLNDYLEETHLKFRRFICRACHVPE
                     PEERFAMDEYSDMVAVAKPVVYITVGELVNTHRLLLEHQDWIAPDHRDPLHELLEDLG
                     ELPTVPDLIGENVAADGNVDLSKLEVSLTLTNKFEGLETDADDNNAQSLLLSTKQMLA
                     DIMQFHSGDSLKEILSLSASREQEAAHKRLMCRRQACEAQTPVSLRRHRSLTAHSLLP
                     LAEKQQRVLRNLRRLEGLALVSASDGYQGLVDELAKDIRNQRRHRQRRKAELVKLQAT
                     FQALSTKATFYEEQGDYYSQYIRACLDHLAPSSKSSGKGKKQPSLHYTAAQLLEKGVL
                     VEIEDLPTSHFRNVIFDITPGDEAGKFEVNAKFLGVDMERFQLHYQDLLQLQYEGVAV
                     MKLFSKAKVNVNLLIFLLNKKFLRK"
     misc_feature    115..570
                     /gene="IQGAP3"
                     /note="calponin homology (CH) domain superfamily; Region:
                     CH_SF; cl00030"
                     /db_xref="CDD:469584"
     misc_feature    order(151..153,334..336,340..345,352..357,361..363,
                     403..417,433..435,439..444,448..453,460..465,472..474)
                     /gene="IQGAP3"
                     /note="actin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409031"
     misc_feature    2053..2130
                     /gene="IQGAP3"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; Region: WW; cd00201"
                     /db_xref="CDD:238122"
     misc_feature    order(2086..2088,2119..2121)
                     /gene="IQGAP3"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     misc_feature    <2143..>2916
                     /gene="IQGAP3"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <2662..4938
                     /gene="IQGAP3"
                     /note="Protein involved in regulation of cellular
                     morphogenesis/cytokinesis [Cell division and chromosome
                     partitioning / Signal transduction mechanisms]; Region:
                     IQG1; COG5261"
                     /db_xref="CDD:227586"
     misc_feature    3004..4053
                     /gene="IQGAP3"
                     /note="Ras-GTPase Activating Domain of IQ motif containing
                     GTPase activating protein 3; Region: RasGAP_IQGAP3;
                     cd12207"
                     /db_xref="CDD:213346"
     misc_feature    order(3136..3138,3229..3231,3235..3237,3241..3246,
                     3253..3255,3262..3264,3274..3276,3550..3552,3574..3579,
                     3586..3591,3598..3600,3673..3675,3682..3687,3694..3696,
                     3706..3708,3712..3714,3727..3732)
                     /gene="IQGAP3"
                     /note="putative RAS interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:213346"
ORIGIN      
        1 ggcgggagat tcaaacctgg aagaaggaga aacatggagg ggagaggaac gggcccgtcc
       61 cgggcgacct atgaacgcct cacagctgag gaaatggatg agcagaggcg gcagaacgtc
      121 gcctatgagt acctgtgccg gctggaggaa gccaagcgct ggatggaggc ctgcctgaag
      181 gaggagcttc cttccccggt ggagctggag gagagcctcc ggaacggagt gctgctggcc
      241 aagctgggcc actgttttgc accctctgtg gttcccttga agaagatcta tgacgtggag
      301 cagctacggt accaggcaac tggcttgcat ttccgtcaca cagacaacat caacttttgg
      361 ctgtctgcag tagcccacat cggtctgcct tcgaccttct tgccagagac cacggacatt
      421 tatgacaaga agaacatgcc ccgggtggtc tactgcatcc atgcactcag tctcttcctc
      481 ttccggctgg gattggcccc tcagatacat gatctatatg ggaaagtgaa attcacagct
      541 gaggaactca gcaacatggc ctctgaacta gctaaatatg gcctccagct gcctgccttc
      601 agcaagatcg ggggcatcct ggccaatgaa ctctcggtgg atgaggctgc agtccatgca
      661 gctgttcttg ccatcaatga ggcagtggag cgaggagtgg tcaaggacac cctggctgcc
      721 ttgcagaatc ccagtgctct gctggggaat cttcgagagc ctctggcagc catctaccag
      781 gagctgctgg cccaggccaa gatggagaag gctgccaatg ccaggaaccg ctttttgcag
      841 aatgatggag aaagccagga catctatgac tgctacctaa ctcaggctga aatccagggc
      901 aacatcaacc atgtcaatgt ccatggggct ctagaagttg ttgatgatgc cctggaaaga
      961 cagagccctg aggccttgct tgaggccctt caagaccctg tcctggccct gcaaggagtg
     1021 aggagagacc ttgcagactg gtacctggaa cagctgagct cagacagaga gcagaaagca
     1081 caggagctgg gcctggtgga gcttctggaa aaggaggagg tccaagctgg tgtggctgca
     1141 gccaacataa agtgtgatca ggaacaagcc atgctccagg ccgtgcagag gatcaacaaa
     1201 gccatccgga ggggagtggc agctgacacc gtgaaggagc tgatgtgccc agaagcccag
     1261 ctgcctccag tgtacccctt tgcatcagct gtgtaccagc aggagctggc agtgctccag
     1321 cggcagcagc ggggggagct tggccaggag gagctcttcg tggccgtgga gatgctctca
     1381 gccgtggtcc tgatcaaccg agctctggag gccagggatg ccagcagctt ctggagcagt
     1441 ctggtgaacc ccgccacagg gctggccgag gtggaaggag agaatgctca acggtacttt
     1501 gatactctgg taaagctgca acaggtgcat ggaatggatg gggccttcct gagctggaat
     1561 gatctccagg ccactgtgag tcaggtcaac gcccaggtcc aggaagagac caatcaggtc
     1621 cttgcggtca gcctcatcaa tgaggctctg gaacagaaca accctgaaaa gaccctctcc
     1681 tcccttctgc ttcctgcggc tggcctggac gatgtcagcc ttcctgtcgc cccacggtac
     1741 catctcctcc tcgtggcggc caaaaagcag aaggcccagg tgacagggga tcctggagct
     1801 gcactatggc tggaagagat ccgccaggaa gtggttagag ccaaccagga cacaaacaca
     1861 gctcagagga tggctcttgg tgtggccgcc atcaatcagg ccatcaagga gggcaaggca
     1921 gcccagacag aacgggtgtt aagaaacccc tccgtgggcc tccgaggggt ggttcctgac
     1981 tgtgctgacg gctaccagca agtcctggaa gatgccatgg caaagaagcg gcgcccaggg
     2041 gatacagcgc tctgggttca acatgacatg aaggatggta ccgcctacta cttccatctg
     2101 cagaccttcc aggggacctg ggagcgaccc tccggctgcc gcctcaacac ctcccacctg
     2161 actcgggagg agatccagtt ggccgtcacc aagatcaccg ctgcccacga ccgccaacag
     2221 ctctggaagg ccaatgtggg cttcattatc cggctccagg cctgcctccg cggcttcctt
     2281 gttcggcaga agtttgctga acgttcccac tttctgagga cctggctccc agcagtcatc
     2341 aaaatccagg ctcattggcg gggttacaga cagcggaaga tttacctgga acggttgcag
     2401 tatttaaaag caaaaacgaa tgctataatc aagatccagg cttgggcccg gatgtgggca
     2461 gctcggaggc gataccggag gcgtctgggc tacttccaga agaatgttaa ctccatcgtg
     2521 aagatccagg catttttccg agccaggaaa gcccgggatg actacaggat gttagtccac
     2581 gtgccccatc cccctctgag cgtggtacgc agatttgccc acctcttgaa tcaaagccac
     2641 caggacttct tggctgaggc agagctgctg aagctccagg aagaggtggt caggaagatc
     2701 cggtccaatc agcagctgga gcaggacctc aatctcatgg acatcaagat tggcctgctg
     2761 gtgaagaatc ggatcaccct gcaggaagtg gtctcccact gcaagaagct gaccaagaag
     2821 aataaggaac agctgtcaga tatgatggtt ctggacaagc agaagggatt aaagtcgctg
     2881 agcaaagaga aacggcagaa actagaagct taccaacacc tcttctacct gctccagact
     2941 caacccatct acctggccaa gctgatcttt cagatgccgc agaacaaaac caccaagttc
     3001 atggaatcag tgattttcag tctatacaac tatgcctcca accgccgaga ggcctatctc
     3061 ctgctccagc tgttcaagac agcactccag gaggaaatca agtcgaaggt ggagcagccc
     3121 caggacatgg tgacaggcaa cccaacggtg gtgaggctgg tggtgagatt ctatcgtaac
     3181 gggcgggggc aaagtgccct gcgggagatc ctgggcaagg tgatccagga tgtgctggag
     3241 gacaagatgc tcagcatcca cacagaccct gtccacctct acaagagctg gatcaaccag
     3301 accgaggccc agacagggca gcgcagccac ctcccctatg acatcacccc agagcaggcc
     3361 ttgagccacc ccgaggtcca gagacgactg gacatctccc tccgcaacct ccttgccatg
     3421 accgataaat tccttgcagc catcatctca tctgcggacc aaattccgta tgggatgcga
     3481 tacgtggcca aggtcctgaa gacaactctg gcagagaagt tccccgacgc cacagagaat
     3541 gaggtctata aggtcgtagg gaacctcctg tactaccgct tcctgaaccc ggctgtagtg
     3601 gcccccgacg ccttcgacat tgtggccatg gcagcaggcg gcgccctggc caccccccag
     3661 cgccacgccc tgggggctgt ggctcaagtc ctgcagcatg ctgcagccgg caaggccttc
     3721 tccagggaga gccagcacct gcgggtcttg aacgactatc tggaggagac acacctcaag
     3781 ttcaggaggt tcatctgccg agcctgccac gtgccagagc cagaagagcg ctttgcgatg
     3841 gatgagtact cagacatggt ggctgtggcc aaacctgtgg tgtacatcac cgtgggggag
     3901 ctggtcaaca cgcacaggct gttgctagaa caccaggact ggatcgcccc tgatcaccgc
     3961 gaccccctgc atgagctcct ggaggacctt ggggagctgc ccaccgtccc tgacctcatc
     4021 ggggagaacg tagctgcgga tgggaacgtg gatctgagca agctagaagt gtccctgaca
     4081 ctgaccaaca agtttgaagg gctggagaca gatgctgacg acaacaacgc ccagagcctg
     4141 cttctgagca ccaagcagat gctggctgac atcatgcagt tccactctgg ggattccctc
     4201 aaggagatcc tgtccctctc ggcctccaga gagcaggaag cagcccacaa gcggctgatg
     4261 tgccgacgcc aggcctgtga agcccagacc ccagtgtcgc tgcgacgaca ccgctcgctg
     4321 acagctcact ccctcctgcc gctggcagag aagcaacagc gtgtcctgcg gaacctgcgc
     4381 cgactcgagg gcctggcttt ggtcagcgcc agcgacggct accaggggct ggtagacgaa
     4441 ctggccaagg acatccgcaa ccagcgcagg caccggcagc ggcggaaggc agagctggtg
     4501 aagctccagg ccacgttcca ggccctgagc actaaggcca ccttttatga ggagcagggc
     4561 gactactaca gccagtacat ccgggcctgc ctggaccacc tggcccccag ctccaagagt
     4621 tctgggaaag ggaagaagca gccatctctc cattacactg ctgcccagct cctggagaag
     4681 ggtgtcttgg tggaaattga agatcttccc acctctcact tcagaaatgt gatctttgac
     4741 atcacccctg gagatgaggc aggaaagttc gaagtaaatg ccaagttcct gggtgtggac
     4801 atggagcgat ttcagcttca ctatcaggac ctcctgcagc tccaatacga gggtgtggct
     4861 gtcatgaaac tcttcagcaa ggccaaggtc aacgtcaacc ttctcatctt cctcctcaac
     4921 aagaaattct tgcggaagtg acagaggcag tgggtgctac ccaagcctgt cttacctcgc
     4981 tggatgcttt tcttaacact aatgcactat tccacttccc tgcagacacc cagagctcag
     5041 gactgggcag ggctcgagga gtctcaccct ttgcccagct gggaggagtt tgtctacctg
     5101 ggcacaggca gggactctaa ttggctcaag cgaaccctgt ctctgagtct ggctgtgtgg
     5161 ctttgaagtc ccagaacccg acggttttcc agccggacgg tagggaatga acctagggcc
     5221 tgccctttga cctgagaaag ctattgctct tggtctgctg ctgccctccc aataccgtga
     5281 gcactgcccc agcggcctga tttcctgctg cctcccttcc ctttgcagac cccaaagcca
     5341 gggggtccct gtccccactc ccacttcatc agcagtgtgt gttcctgccc tgctgaagcc
     5401 caggccactc tgtgacgcct cacaccctcc agcccgtcac cctcacaccg ggtggacagc
     5461 gctcgtgaat gcccatgtgg cattgtgaca cggttgccgt ccgaggcggc ctaggcaaga
     5521 tgaccctccg ttaacctcaa atctcattcc cttgtttaca gtctgtttta catgcgggtc
     5581 actagggtat ttattctctc ctacccctat actctgtgca gccttaatca tggctttctt
     5641 tctttttgag ctcagagaaa gggttcccat ttccctgttc aaactaatat tcatgccaat
     5701 cttttatacc ttgtatataa agtcaccttg gatcactcgt gcttaagatc tcattacttc
     5761 agcttcatac ggtacaaaga gcagtcttcc ccttttctct ctcaccctca ggattcttgc
     5821 accttagagc tgactcttcc aggcagtttc catagatctg ccgtcttgtc tcagccactg
     5881 tctctctctt gtccccacat ctacccagct tcctgtccct gtggcccttc tgatttcatt
     5941 ttaataaaag cagctgttac cccca
//
LOCUS       XM_032606495            5956 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus IQ motif containing GTPase activating
            protein 3 (IQGAP3), transcript variant X4, mRNA.
ACCESSION   XM_032606495
VERSION     XM_032606495.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5956
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5956
                     /gene="IQGAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 19 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740663"
     CDS             34..4932
                     /gene="IQGAP3"
                     /codon_start=1
                     /product="ras GTPase-activating-like protein IQGAP3
                     isoform X4"
                     /protein_id="XP_032462386.1"
                     /db_xref="GeneID:116740663"
                     /translation="MEGRGTGPSRATYERLTAEEMDEQRRQNVAYEYLCRLEEAKRWM
                     EACLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDVEQLRYQATGLHFRH
                     TDNINFWLSAVAHIGLPSTFLPETTDIYDKKNMPRVVYCIHALSLFLFRLGLAPQIHD
                     LYGKVKFTAEELSNMASELAKYGLQLPAFSKIGGILANELSVDEAAVHAAVLAINEAV
                     ERGVVKDTLAALQNPSALLGNLREPLAAIYQELLAQAKMEKAANARNRNDGESQDIYD
                     CYLTQAEIQGNINHVNVHGALEVVDDALERQSPEALLEALQDPVLALQGVRRDLADWY
                     LEQLSSDREQKAQELGLVELLEKEEVQAGVAAANIKCDQEQAMLQAVQRINKAIRRGV
                     AADTVKELMCPEAQLPPVYPFASAVYQQELAVLQRQQRGELGQEELFVAVEMLSAVVL
                     INRALEARDASSFWSSLVNPATGLAEVEGENAQRYFDTLVKLQQVHGMDGAFLSWNDL
                     QATVSQVNAQVQEETNQVLAVSLINEALEQNNPEKTLSSLLLPAAGLDDVSLPVAPRY
                     HLLLVAAKKQKAQVTGDPGAALWLEEIRQEVVRANQDTNTAQRMALGVAAINQAIKEG
                     KAAQTERVLRNPSVGLRGVVPDCADGYQQVLEDAMAKKRRPGDTALWVQHDMKDGTAY
                     YFHLQTFQGTWERPSGCRLNTSHLTREEIQLAVTKITAAHDRQQLWKANVGFIIRLQA
                     CLRGFLVRQKFAERSHFLRTWLPAVIKIQAHWRGYRQRKIYLERLQYLKAKTNAIIKI
                     QAWARMWAARRRYRRRLGYFQKNVNSIVKIQAFFRARKARDDYRMLVHVPHPPLSVVR
                     RFAHLLNQSHQDFLAEAELLKLQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQ
                     EVVSHCKKLTKKNKEQLSDMMVLDKQKGLKSLSKEKRQKLEAYQHLFYLLQTQPIYLA
                     KLIFQMPQNKTTKFMESVIFSLYNYASNRREAYLLLQLFKTALQEEIKSKVEQPQDMV
                     TGNPTVVRLVVRFYRNGRGQSALREILGKVIQDVLEDKMLSIHTDPVHLYKSWINQTE
                     AQTGQRSHLPYDITPEQALSHPEVQRRLDISLRNLLAMTDKFLAAIISSADQIPYGMR
                     YVAKVLKTTLAEKFPDATENEVYKVVGNLLYYRFLNPAVVAPDAFDIVAMAAGGALAT
                     PQRHALGAVAQVLQHAAAGKAFSRESQHLRVLNDYLEETHLKFRRFICRACHVPEPEE
                     RFAMDEYSDMVAVAKPVVYITVGELVNTHRLLLEHQDWIAPDHRDPLHELLEDLGELP
                     TVPDLIGENVAADGNVDLSKLEVSLTLTNKFEGLETDADDNNAQSLLLSTKQMLADIM
                     QFHSGDSLKEILSLSASREQEAAHKRLMCRRQACEAQTPVSLRRHRSLTAHSLLPLAE
                     KQQRVLRNLRRLEGLALVSASDGYQGLVDELAKDIRNQRRHRQRRKAELVKLQATFQA
                     LSTKATFYEEQGDYYSQYIRACLDHLAPSSKSSGKGKKQPSLHYTAAQLLEKGVLVEI
                     EDLPTSHFRNVIFDITPGDEAGKFEVNAKFLGVDMERFQLHYQDLLQLQYEGVAVMKL
                     FSKAKVNVNLLIFLLNKKFLRK"
     misc_feature    115..570
                     /gene="IQGAP3"
                     /note="calponin homology (CH) domain superfamily; Region:
                     CH_SF; cl00030"
                     /db_xref="CDD:469584"
     misc_feature    order(151..153,334..336,340..345,352..357,361..363,
                     403..417,433..435,439..444,448..453,460..465,472..474)
                     /gene="IQGAP3"
                     /note="actin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409031"
     misc_feature    2044..2121
                     /gene="IQGAP3"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; Region: WW; cd00201"
                     /db_xref="CDD:238122"
     misc_feature    order(2077..2079,2110..2112)
                     /gene="IQGAP3"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     misc_feature    <2134..>2907
                     /gene="IQGAP3"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <2653..4929
                     /gene="IQGAP3"
                     /note="Protein involved in regulation of cellular
                     morphogenesis/cytokinesis [Cell division and chromosome
                     partitioning / Signal transduction mechanisms]; Region:
                     IQG1; COG5261"
                     /db_xref="CDD:227586"
     misc_feature    2995..4044
                     /gene="IQGAP3"
                     /note="Ras-GTPase Activating Domain of IQ motif containing
                     GTPase activating protein 3; Region: RasGAP_IQGAP3;
                     cd12207"
                     /db_xref="CDD:213346"
     misc_feature    order(3127..3129,3220..3222,3226..3228,3232..3237,
                     3244..3246,3253..3255,3265..3267,3541..3543,3565..3570,
                     3577..3582,3589..3591,3664..3666,3673..3678,3685..3687,
                     3697..3699,3703..3705,3718..3723)
                     /gene="IQGAP3"
                     /note="putative RAS interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:213346"
ORIGIN      
        1 ggcgggagat tcaaacctgg aagaaggaga aacatggagg ggagaggaac gggcccgtcc
       61 cgggcgacct atgaacgcct cacagctgag gaaatggatg agcagaggcg gcagaacgtc
      121 gcctatgagt acctgtgccg gctggaggaa gccaagcgct ggatggaggc ctgcctgaag
      181 gaggagcttc cttccccggt ggagctggag gagagcctcc ggaacggagt gctgctggcc
      241 aagctgggcc actgttttgc accctctgtg gttcccttga agaagatcta tgacgtggag
      301 cagctacggt accaggcaac tggcttgcat ttccgtcaca cagacaacat caacttttgg
      361 ctgtctgcag tagcccacat cggtctgcct tcgaccttct tgccagagac cacggacatt
      421 tatgacaaga agaacatgcc ccgggtggtc tactgcatcc atgcactcag tctcttcctc
      481 ttccggctgg gattggcccc tcagatacat gatctatatg ggaaagtgaa attcacagct
      541 gaggaactca gcaacatggc ctctgaacta gctaaatatg gcctccagct gcctgccttc
      601 agcaagatcg ggggcatcct ggccaatgaa ctctcggtgg atgaggctgc agtccatgca
      661 gctgttcttg ccatcaatga ggcagtggag cgaggagtgg tcaaggacac cctggctgcc
      721 ttgcagaatc ccagtgctct gctggggaat cttcgagagc ctctggcagc catctaccag
      781 gagctgctgg cccaggccaa gatggagaag gctgccaatg ccaggaaccg caatgatgga
      841 gaaagccagg acatctatga ctgctaccta actcaggctg aaatccaggg caacatcaac
      901 catgtcaatg tccatggggc tctagaagtt gttgatgatg ccctggaaag acagagccct
      961 gaggccttgc ttgaggccct tcaagaccct gtcctggccc tgcaaggagt gaggagagac
     1021 cttgcagact ggtacctgga acagctgagc tcagacagag agcagaaagc acaggagctg
     1081 ggcctggtgg agcttctgga aaaggaggag gtccaagctg gtgtggctgc agccaacata
     1141 aagtgtgatc aggaacaagc catgctccag gccgtgcaga ggatcaacaa agccatccgg
     1201 aggggagtgg cagctgacac cgtgaaggag ctgatgtgcc cagaagccca gctgcctcca
     1261 gtgtacccct ttgcatcagc tgtgtaccag caggagctgg cagtgctcca gcggcagcag
     1321 cggggggagc ttggccagga ggagctcttc gtggccgtgg agatgctctc agccgtggtc
     1381 ctgatcaacc gagctctgga ggccagggat gccagcagct tctggagcag tctggtgaac
     1441 cccgccacag ggctggccga ggtggaagga gagaatgctc aacggtactt tgatactctg
     1501 gtaaagctgc aacaggtgca tggaatggat ggggccttcc tgagctggaa tgatctccag
     1561 gccactgtga gtcaggtcaa cgcccaggtc caggaagaga ccaatcaggt ccttgcggtc
     1621 agcctcatca atgaggctct ggaacagaac aaccctgaaa agaccctctc ctcccttctg
     1681 cttcctgcgg ctggcctgga cgatgtcagc cttcctgtcg ccccacggta ccatctcctc
     1741 ctcgtggcgg ccaaaaagca gaaggcccag gtgacagggg atcctggagc tgcactatgg
     1801 ctggaagaga tccgccagga agtggttaga gccaaccagg acacaaacac agctcagagg
     1861 atggctcttg gtgtggccgc catcaatcag gccatcaagg agggcaaggc agcccagaca
     1921 gaacgggtgt taagaaaccc ctccgtgggc ctccgagggg tggttcctga ctgtgctgac
     1981 ggctaccagc aagtcctgga agatgccatg gcaaagaagc ggcgcccagg ggatacagcg
     2041 ctctgggttc aacatgacat gaaggatggt accgcctact acttccatct gcagaccttc
     2101 caggggacct gggagcgacc ctccggctgc cgcctcaaca cctcccacct gactcgggag
     2161 gagatccagt tggccgtcac caagatcacc gctgcccacg accgccaaca gctctggaag
     2221 gccaatgtgg gcttcattat ccggctccag gcctgcctcc gcggcttcct tgttcggcag
     2281 aagtttgctg aacgttccca ctttctgagg acctggctcc cagcagtcat caaaatccag
     2341 gctcattggc ggggttacag acagcggaag atttacctgg aacggttgca gtatttaaaa
     2401 gcaaaaacga atgctataat caagatccag gcttgggccc ggatgtgggc agctcggagg
     2461 cgataccgga ggcgtctggg ctacttccag aagaatgtta actccatcgt gaagatccag
     2521 gcatttttcc gagccaggaa agcccgggat gactacagga tgttagtcca cgtgccccat
     2581 ccccctctga gcgtggtacg cagatttgcc cacctcttga atcaaagcca ccaggacttc
     2641 ttggctgagg cagagctgct gaagctccag gaagaggtgg tcaggaagat ccggtccaat
     2701 cagcagctgg agcaggacct caatctcatg gacatcaaga ttggcctgct ggtgaagaat
     2761 cggatcaccc tgcaggaagt ggtctcccac tgcaagaagc tgaccaagaa gaataaggaa
     2821 cagctgtcag atatgatggt tctggacaag cagaagggat taaagtcgct gagcaaagag
     2881 aaacggcaga aactagaagc ttaccaacac ctcttctacc tgctccagac tcaacccatc
     2941 tacctggcca agctgatctt tcagatgccg cagaacaaaa ccaccaagtt catggaatca
     3001 gtgattttca gtctatacaa ctatgcctcc aaccgccgag aggcctatct cctgctccag
     3061 ctgttcaaga cagcactcca ggaggaaatc aagtcgaagg tggagcagcc ccaggacatg
     3121 gtgacaggca acccaacggt ggtgaggctg gtggtgagat tctatcgtaa cgggcggggg
     3181 caaagtgccc tgcgggagat cctgggcaag gtgatccagg atgtgctgga ggacaagatg
     3241 ctcagcatcc acacagaccc tgtccacctc tacaagagct ggatcaacca gaccgaggcc
     3301 cagacagggc agcgcagcca cctcccctat gacatcaccc cagagcaggc cttgagccac
     3361 cccgaggtcc agagacgact ggacatctcc ctccgcaacc tccttgccat gaccgataaa
     3421 ttccttgcag ccatcatctc atctgcggac caaattccgt atgggatgcg atacgtggcc
     3481 aaggtcctga agacaactct ggcagagaag ttccccgacg ccacagagaa tgaggtctat
     3541 aaggtcgtag ggaacctcct gtactaccgc ttcctgaacc cggctgtagt ggcccccgac
     3601 gccttcgaca ttgtggccat ggcagcaggc ggcgccctgg ccacccccca gcgccacgcc
     3661 ctgggggctg tggctcaagt cctgcagcat gctgcagccg gcaaggcctt ctccagggag
     3721 agccagcacc tgcgggtctt gaacgactat ctggaggaga cacacctcaa gttcaggagg
     3781 ttcatctgcc gagcctgcca cgtgccagag ccagaagagc gctttgcgat ggatgagtac
     3841 tcagacatgg tggctgtggc caaacctgtg gtgtacatca ccgtggggga gctggtcaac
     3901 acgcacaggc tgttgctaga acaccaggac tggatcgccc ctgatcaccg cgaccccctg
     3961 catgagctcc tggaggacct tggggagctg cccaccgtcc ctgacctcat cggggagaac
     4021 gtagctgcgg atgggaacgt ggatctgagc aagctagaag tgtccctgac actgaccaac
     4081 aagtttgaag ggctggagac agatgctgac gacaacaacg cccagagcct gcttctgagc
     4141 accaagcaga tgctggctga catcatgcag ttccactctg gggattccct caaggagatc
     4201 ctgtccctct cggcctccag agagcaggaa gcagcccaca agcggctgat gtgccgacgc
     4261 caggcctgtg aagcccagac cccagtgtcg ctgcgacgac accgctcgct gacagctcac
     4321 tccctcctgc cgctggcaga gaagcaacag cgtgtcctgc ggaacctgcg ccgactcgag
     4381 ggcctggctt tggtcagcgc cagcgacggc taccaggggc tggtagacga actggccaag
     4441 gacatccgca accagcgcag gcaccggcag cggcggaagg cagagctggt gaagctccag
     4501 gccacgttcc aggccctgag cactaaggcc accttttatg aggagcaggg cgactactac
     4561 agccagtaca tccgggcctg cctggaccac ctggccccca gctccaagag ttctgggaaa
     4621 gggaagaagc agccatctct ccattacact gctgcccagc tcctggagaa gggtgtcttg
     4681 gtggaaattg aagatcttcc cacctctcac ttcagaaatg tgatctttga catcacccct
     4741 ggagatgagg caggaaagtt cgaagtaaat gccaagttcc tgggtgtgga catggagcga
     4801 tttcagcttc actatcagga cctcctgcag ctccaatacg agggtgtggc tgtcatgaaa
     4861 ctcttcagca aggccaaggt caacgtcaac cttctcatct tcctcctcaa caagaaattc
     4921 ttgcggaagt gacagaggca gtgggtgcta cccaagcctg tcttacctcg ctggatgctt
     4981 ttcttaacac taatgcacta ttccacttcc ctgcagacac ccagagctca ggactgggca
     5041 gggctcgagg agtctcaccc tttgcccagc tgggaggagt ttgtctacct gggcacaggc
     5101 agggactcta attggctcaa gcgaaccctg tctctgagtc tggctgtgtg gctttgaagt
     5161 cccagaaccc gacggttttc cagccggacg gtagggaatg aacctagggc ctgccctttg
     5221 acctgagaaa gctattgctc ttggtctgct gctgccctcc caataccgtg agcactgccc
     5281 cagcggcctg atttcctgct gcctcccttc cctttgcaga ccccaaagcc agggggtccc
     5341 tgtccccact cccacttcat cagcagtgtg tgttcctgcc ctgctgaagc ccaggccact
     5401 ctgtgacgcc tcacaccctc cagcccgtca ccctcacacc gggtggacag cgctcgtgaa
     5461 tgcccatgtg gcattgtgac acggttgccg tccgaggcgg cctaggcaag atgaccctcc
     5521 gttaacctca aatctcattc ccttgtttac agtctgtttt acatgcgggt cactagggta
     5581 tttattctct cctaccccta tactctgtgc agccttaatc atggctttct ttctttttga
     5641 gctcagagaa agggttccca tttccctgtt caaactaata ttcatgccaa tcttttatac
     5701 cttgtatata aagtcacctt ggatcactcg tgcttaagat ctcattactt cagcttcata
     5761 cggtacaaag agcagtcttc cccttttctc tctcaccctc aggattcttg caccttagag
     5821 ctgactcttc caggcagttt ccatagatct gccgtcttgt ctcagccact gtctctctct
     5881 tgtccccaca tctacccagc ttcctgtccc tgtggccctt ctgatttcat tttaataaaa
     5941 gcagctgtta ccccca
//
LOCUS       XM_032606504            5662 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus IQ motif containing GTPase activating
            protein 3 (IQGAP3), transcript variant X5, mRNA.
ACCESSION   XM_032606504
VERSION     XM_032606504.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5662
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5662
                     /gene="IQGAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740663"
     CDS             151..4638
                     /gene="IQGAP3"
                     /codon_start=1
                     /product="ras GTPase-activating-like protein IQGAP3
                     isoform X5"
                     /protein_id="XP_032462395.1"
                     /db_xref="GeneID:116740663"
                     /translation="MASELAKYGLQLPAFSKIGGILANELSVDEAAVHAAVLAINEAV
                     ERGVVKDTLAALQNPSALLGNLREPLAAIYQELLAQAKMEKAANARNRFLQNDGESQD
                     IYDCYLTQAEIQGNINHVNVHGALEVVDDALERQSPEALLEALQDPVLALQGVRRDLA
                     DWYLEQLSSDREQKAQELGLVELLEKEEVQAGVAAANIKCDQEQAMLQAVQRINKAIR
                     RGVAADTVKELMCPEAQLPPVYPFASAVYQQELAVLQRQQRGELGQEELFVAVEMLSA
                     VVLINRALEARDASSFWSSLVNPATGLAEVEGENAQRYFDTLVKLQQVHGMDGAFLSW
                     NDLQATVSQVNAQVQEETNREWSPGLGEDGPMRTAPSLSHKSGPSAHLYLSFPEVLAV
                     SLINEALEQNNPEKTLSSLLLPAAGLDDVSLPVAPRYHLLLVAAKKQKAQVTGDPGAA
                     LWLEEIRQEVVRANQDTNTAQRMALGVAAINQAIKEGKAAQTERVLRNPSVGLRGVVP
                     DCADGYQQVLEDAMAKKRRPGDTALWVQHDMKDGTAYYFHLQTFQGTWERPSGCRLNT
                     SHLTREEIQLAVTKITAAHDRQQLWKANVGFIIRLQACLRGFLVRQKFAERSHFLRTW
                     LPAVIKIQAHWRGYRQRKIYLERLQYLKAKTNAIIKIQAWARMWAARRRYRRRLGYFQ
                     KNVNSIVKIQAFFRARKARDDYRMLVHVPHPPLSVVRRFAHLLNQSHQDFLAEAELLK
                     LQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMM
                     VLDKQKGLKSLSKEKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNKTTKFMESVIFS
                     LYNYASNRREAYLLLQLFKTALQEEIKSKVEQPQDMVTGNPTVVRLVVRFYRNGRGQS
                     ALREILGKVIQDVLEDKMLSIHTDPVHLYKSWINQTEAQTGQRSHLPYDITPEQALSH
                     PEVQRRLDISLRNLLAMTDKFLAAIISSADQIPYGMRYVAKVLKTTLAEKFPDATENE
                     VYKVVGNLLYYRFLNPAVVAPDAFDIVAMAAGGALATPQRHALGAVAQVLQHAAAGKA
                     FSRESQHLRVLNDYLEETHLKFRRFICRACHVPEPEERFAMDEYSDMVAVAKPVVYIT
                     VGELVNTHRLLLEHQDWIAPDHRDPLHELLEDLGELPTVPDLIGENVAADGNVDLSKL
                     EVSLTLTNKFEGLETDADDNNAQSLLLSTKQMLADIMQFHSGDSLKEILSLSASREQE
                     AAHKRLMCRRQACEAQTPVSLRRHRSLTAHSLLPLAEKQQRVLRNLRRLEGLALVSAS
                     DGYQGLVDELAKDIRNQRRHRQRRKAELVKLQATFQALSTKATFYEEQGDYYSQYIRA
                     CLDHLAPSSKSSGKGKKQPSLHYTAAQLLEKGVLVEIEDLPTSHFRNVIFDITPGDEA
                     GKFEVNAKFLGVDMERFQLHYQDLLQLQYEGVAVMKLFSKAKVNVNLLIFLLNKKFLR
                     K"
     misc_feature    1750..1827
                     /gene="IQGAP3"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; Region: WW; cd00201"
                     /db_xref="CDD:238122"
     misc_feature    order(1783..1785,1816..1818)
                     /gene="IQGAP3"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     misc_feature    <1840..>2613
                     /gene="IQGAP3"
                     /note="Myosin heavy chain [General function prediction
                     only]; Region: COG5022"
                     /db_xref="CDD:227355"
     misc_feature    <2359..4635
                     /gene="IQGAP3"
                     /note="Protein involved in regulation of cellular
                     morphogenesis/cytokinesis [Cell division and chromosome
                     partitioning / Signal transduction mechanisms]; Region:
                     IQG1; COG5261"
                     /db_xref="CDD:227586"
     misc_feature    2701..3750
                     /gene="IQGAP3"
                     /note="Ras GTPase Activating Domain; Region: RasGAP;
                     cl02569"
                     /db_xref="CDD:470620"
     misc_feature    order(2833..2835,2926..2928,2932..2934,2938..2943,
                     2950..2952,2959..2961,2971..2973,3247..3249,3271..3276,
                     3283..3288,3295..3297,3370..3372,3379..3384,3391..3393,
                     3403..3405,3409..3411,3424..3429)
                     /gene="IQGAP3"
                     /note="RAS interface [polypeptide binding]; other site"
                     /db_xref="CDD:213328"
ORIGIN      
        1 atttccgtca cacagacaac atcaactttt ggctgtctgc agtagcccac atcggtctgc
       61 cttcgtctct tcctcttccg gctgggattg gcccctcaga tacatgatct atatgggaaa
      121 gtgaaattca cagctgagga actcagcaac atggcctctg aactagctaa atatggcctc
      181 cagctgcctg ccttcagcaa gatcgggggc atcctggcca atgaactctc ggtggatgag
      241 gctgcagtcc atgcagctgt tcttgccatc aatgaggcag tggagcgagg agtggtcaag
      301 gacaccctgg ctgccttgca gaatcccagt gctctgctgg ggaatcttcg agagcctctg
      361 gcagccatct accaggagct gctggcccag gccaagatgg agaaggctgc caatgccagg
      421 aaccgctttt tgcagaatga tggagaaagc caggacatct atgactgcta cctaactcag
      481 gctgaaatcc agggcaacat caaccatgtc aatgtccatg gggctctaga agttgttgat
      541 gatgccctgg aaagacagag ccctgaggcc ttgcttgagg cccttcaaga ccctgtcctg
      601 gccctgcaag gagtgaggag agaccttgca gactggtacc tggaacagct gagctcagac
      661 agagagcaga aagcacagga gctgggcctg gtggagcttc tggaaaagga ggaggtccaa
      721 gctggtgtgg ctgcagccaa cataaagtgt gatcaggaac aagccatgct ccaggccgtg
      781 cagaggatca acaaagccat ccggagggga gtggcagctg acaccgtgaa ggagctgatg
      841 tgcccagaag cccagctgcc tccagtgtac ccctttgcat cagctgtgta ccagcaggag
      901 ctggcagtgc tccagcggca gcagcggggg gagcttggcc aggaggagct cttcgtggcc
      961 gtggagatgc tctcagccgt ggtcctgatc aaccgagctc tggaggccag ggatgccagc
     1021 agcttctgga gcagtctggt gaaccccgcc acagggctgg ccgaggtgga aggagagaat
     1081 gctcaacggt actttgatac tctggtaaag ctgcaacagg tgcatggaat ggatggggcc
     1141 ttcctgagct ggaatgatct ccaggccact gtgagtcagg tcaacgccca ggtccaggaa
     1201 gagaccaatc gtgagtggag tccaggactg ggggaagatg gcccaatgcg gacagcccca
     1261 tcccttagcc ataagtctgg gccctctgcc cacctatatc tctctttccc agaggtcctt
     1321 gcggtcagcc tcatcaatga ggctctggaa cagaacaacc ctgaaaagac cctctcctcc
     1381 cttctgcttc ctgcggctgg cctggacgat gtcagccttc ctgtcgcccc acggtaccat
     1441 ctcctcctcg tggcggccaa aaagcagaag gcccaggtga caggggatcc tggagctgca
     1501 ctatggctgg aagagatccg ccaggaagtg gttagagcca accaggacac aaacacagct
     1561 cagaggatgg ctcttggtgt ggccgccatc aatcaggcca tcaaggaggg caaggcagcc
     1621 cagacagaac gggtgttaag aaacccctcc gtgggcctcc gaggggtggt tcctgactgt
     1681 gctgacggct accagcaagt cctggaagat gccatggcaa agaagcggcg cccaggggat
     1741 acagcgctct gggttcaaca tgacatgaag gatggtaccg cctactactt ccatctgcag
     1801 accttccagg ggacctggga gcgaccctcc ggctgccgcc tcaacacctc ccacctgact
     1861 cgggaggaga tccagttggc cgtcaccaag atcaccgctg cccacgaccg ccaacagctc
     1921 tggaaggcca atgtgggctt cattatccgg ctccaggcct gcctccgcgg cttccttgtt
     1981 cggcagaagt ttgctgaacg ttcccacttt ctgaggacct ggctcccagc agtcatcaaa
     2041 atccaggctc attggcgggg ttacagacag cggaagattt acctggaacg gttgcagtat
     2101 ttaaaagcaa aaacgaatgc tataatcaag atccaggctt gggcccggat gtgggcagct
     2161 cggaggcgat accggaggcg tctgggctac ttccagaaga atgttaactc catcgtgaag
     2221 atccaggcat ttttccgagc caggaaagcc cgggatgact acaggatgtt agtccacgtg
     2281 ccccatcccc ctctgagcgt ggtacgcaga tttgcccacc tcttgaatca aagccaccag
     2341 gacttcttgg ctgaggcaga gctgctgaag ctccaggaag aggtggtcag gaagatccgg
     2401 tccaatcagc agctggagca ggacctcaat ctcatggaca tcaagattgg cctgctggtg
     2461 aagaatcgga tcaccctgca ggaagtggtc tcccactgca agaagctgac caagaagaat
     2521 aaggaacagc tgtcagatat gatggttctg gacaagcaga agggattaaa gtcgctgagc
     2581 aaagagaaac ggcagaaact agaagcttac caacacctct tctacctgct ccagactcaa
     2641 cccatctacc tggccaagct gatctttcag atgccgcaga acaaaaccac caagttcatg
     2701 gaatcagtga ttttcagtct atacaactat gcctccaacc gccgagaggc ctatctcctg
     2761 ctccagctgt tcaagacagc actccaggag gaaatcaagt cgaaggtgga gcagccccag
     2821 gacatggtga caggcaaccc aacggtggtg aggctggtgg tgagattcta tcgtaacggg
     2881 cgggggcaaa gtgccctgcg ggagatcctg ggcaaggtga tccaggatgt gctggaggac
     2941 aagatgctca gcatccacac agaccctgtc cacctctaca agagctggat caaccagacc
     3001 gaggcccaga cagggcagcg cagccacctc ccctatgaca tcaccccaga gcaggccttg
     3061 agccaccccg aggtccagag acgactggac atctccctcc gcaacctcct tgccatgacc
     3121 gataaattcc ttgcagccat catctcatct gcggaccaaa ttccgtatgg gatgcgatac
     3181 gtggccaagg tcctgaagac aactctggca gagaagttcc ccgacgccac agagaatgag
     3241 gtctataagg tcgtagggaa cctcctgtac taccgcttcc tgaacccggc tgtagtggcc
     3301 cccgacgcct tcgacattgt ggccatggca gcaggcggcg ccctggccac cccccagcgc
     3361 cacgccctgg gggctgtggc tcaagtcctg cagcatgctg cagccggcaa ggccttctcc
     3421 agggagagcc agcacctgcg ggtcttgaac gactatctgg aggagacaca cctcaagttc
     3481 aggaggttca tctgccgagc ctgccacgtg ccagagccag aagagcgctt tgcgatggat
     3541 gagtactcag acatggtggc tgtggccaaa cctgtggtgt acatcaccgt gggggagctg
     3601 gtcaacacgc acaggctgtt gctagaacac caggactgga tcgcccctga tcaccgcgac
     3661 cccctgcatg agctcctgga ggaccttggg gagctgccca ccgtccctga cctcatcggg
     3721 gagaacgtag ctgcggatgg gaacgtggat ctgagcaagc tagaagtgtc cctgacactg
     3781 accaacaagt ttgaagggct ggagacagat gctgacgaca acaacgccca gagcctgctt
     3841 ctgagcacca agcagatgct ggctgacatc atgcagttcc actctgggga ttccctcaag
     3901 gagatcctgt ccctctcggc ctccagagag caggaagcag cccacaagcg gctgatgtgc
     3961 cgacgccagg cctgtgaagc ccagacccca gtgtcgctgc gacgacaccg ctcgctgaca
     4021 gctcactccc tcctgccgct ggcagagaag caacagcgtg tcctgcggaa cctgcgccga
     4081 ctcgagggcc tggctttggt cagcgccagc gacggctacc aggggctggt agacgaactg
     4141 gccaaggaca tccgcaacca gcgcaggcac cggcagcggc ggaaggcaga gctggtgaag
     4201 ctccaggcca cgttccaggc cctgagcact aaggccacct tttatgagga gcagggcgac
     4261 tactacagcc agtacatccg ggcctgcctg gaccacctgg cccccagctc caagagttct
     4321 gggaaaggga agaagcagcc atctctccat tacactgctg cccagctcct ggagaagggt
     4381 gtcttggtgg aaattgaaga tcttcccacc tctcacttca gaaatgtgat ctttgacatc
     4441 acccctggag atgaggcagg aaagttcgaa gtaaatgcca agttcctggg tgtggacatg
     4501 gagcgatttc agcttcacta tcaggacctc ctgcagctcc aatacgaggg tgtggctgtc
     4561 atgaaactct tcagcaaggc caaggtcaac gtcaaccttc tcatcttcct cctcaacaag
     4621 aaattcttgc ggaagtgaca gaggcagtgg gtgctaccca agcctgtctt acctcgctgg
     4681 atgcttttct taacactaat gcactattcc acttccctgc agacacccag agctcaggac
     4741 tgggcagggc tcgaggagtc tcaccctttg cccagctggg aggagtttgt ctacctgggc
     4801 acaggcaggg actctaattg gctcaagcga accctgtctc tgagtctggc tgtgtggctt
     4861 tgaagtccca gaacccgacg gttttccagc cggacggtag ggaatgaacc tagggcctgc
     4921 cctttgacct gagaaagcta ttgctcttgg tctgctgctg ccctcccaat accgtgagca
     4981 ctgccccagc ggcctgattt cctgctgcct cccttccctt tgcagacccc aaagccaggg
     5041 ggtccctgtc cccactccca cttcatcagc agtgtgtgtt cctgccctgc tgaagcccag
     5101 gccactctgt gacgcctcac accctccagc ccgtcaccct cacaccgggt ggacagcgct
     5161 cgtgaatgcc catgtggcat tgtgacacgg ttgccgtccg aggcggccta ggcaagatga
     5221 ccctccgtta acctcaaatc tcattccctt gtttacagtc tgttttacat gcgggtcact
     5281 agggtattta ttctctccta cccctatact ctgtgcagcc ttaatcatgg ctttctttct
     5341 ttttgagctc agagaaaggg ttcccatttc cctgttcaaa ctaatattca tgccaatctt
     5401 ttataccttg tatataaagt caccttggat cactcgtgct taagatctca ttacttcagc
     5461 ttcatacggt acaaagagca gtcttcccct tttctctctc accctcagga ttcttgcacc
     5521 ttagagctga ctcttccagg cagtttccat agatctgccg tcttgtctca gccactgtct
     5581 ctctcttgtc cccacatcta cccagcttcc tgtccctgtg gcccttctga tttcatttta
     5641 ataaaagcag ctgttacccc ca
//
LOCUS       XM_032606517            4892 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus plakophilin 1 (PKP1), mRNA.
ACCESSION   XM_032606517
VERSION     XM_032606517.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4892
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4892
                     /gene="PKP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 9 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116740681"
     CDS             185..2368
                     /gene="PKP1"
                     /codon_start=1
                     /product="plakophilin-1"
                     /protein_id="XP_032462408.1"
                     /db_xref="GeneID:116740681"
                     /translation="MNHSPLKTALAYECFQDQDNSTLALPSDLRIKTGTSGQQRVQEQ
                     VMMTVKRQKPKTSQSSTPSHSNRGSMYDGLADNYNSCGTTGRSSYYSKFQAGNGSWGY
                     PIYNGTLKREADNRRFSSYSQMESWGRQYPRSSCISPGVGSDICFMQKMKASRSEPDL
                     YCDPRGTLRKGTLGSKGFKTAQNRYSIYSTCSGQKGVKKYPARPPSCTSRQDPVYVQP
                     ISCTKDQSFSHSRASSKICSEDVECSGLTIPKAVRCLTSPDKKCQAIGAYYIQHTCFQ
                     DESAKQQVYQLGGICKLVDLLRSSNQNVQQAAAGALRNLVFRSTTNKLETQRQSGIRE
                     AVNLLRTTSCTEIQKQLTGLLWNLSSTDELKEELISDALPVLTDRVIIPFSGWCDGNS
                     NVPQKAVDAEVFFNATGCLRNLSSADTGRQTMRNYTGLIDSLMTYIQKCVAAGRCDDK
                     SVENCMCTLHNLCYRLDTEVPTRYRQLEHNARNACTEKSSPGCFSSKNGRMTNNNYDC
                     PLPEEEPNPKGSSWLYHSNAIRTYLNLMGKSRKDATLEACAGALQNLTASKGLMSSGM
                     SQLIGLKEKGLPHIAKLLQSGNSDVVRSGASLLSNMSRHPALHRVMGNQVFPEVTRLL
                     SSHTGHTSNSEDILSSTCYTVRNLMASLPGMAKQHFSSDMVCNVINLCRSSASPRAAE
                     AARLLLADMWSSRELQGVLRQQGFDKSMLGTLAGASSLRNFTSRI"
     misc_feature    902..1003
                     /gene="PKP1"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    order(974..976,986..988,998..1000,1100..1102,1112..1114,
                     1124..1126,1229..1231,1241..1243,1253..1255)
                     /gene="PKP1"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:293788"
     misc_feature    1013..1135
                     /gene="PKP1"
                     /note="Armadillo/beta-catenin-like repeats; Region: ARM;
                     smart00185"
                     /db_xref="CDD:214547"
     misc_feature    1025..1135
                     /gene="PKP1"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    1151..1258
                     /gene="PKP1"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    1730..1855
                     /gene="PKP1"
                     /note="Armadillo/beta-catenin-like repeat; Region: Arm;
                     pfam00514"
                     /db_xref="CDD:425727"
     misc_feature    1769..1849
                     /gene="PKP1"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    order(1820..1822,1832..1834,1844..1846,1961..1963,
                     1973..1975,1985..1987,2099..2101,2111..2113,2123..2125)
                     /gene="PKP1"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:293788"
     misc_feature    1889..1996
                     /gene="PKP1"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
     misc_feature    <1901..1996
                     /gene="PKP1"
                     /note="Armadillo/beta-catenin-like repeats; Region: ARM;
                     smart00185"
                     /db_xref="CDD:214547"
     misc_feature    2012..2128
                     /gene="PKP1"
                     /note="armadillo repeat [structural motif]; Region:
                     armadillo repeat"
                     /db_xref="CDD:293788"
ORIGIN      
        1 tgggccagga cgcgccgggt ggaagtaccg ggagcagcag ccggcagccg tcacgcgcgt
       61 ggccgtcgct ctaggggcac agggagcctc tgagcacgag aagaccccgc tgccgtcccg
      121 cacgtcgcgc gccccgcacc tcgcaccttg ccgctcgctt tccgggtccg cgccccgcgc
      181 cgccatgaac cactcgccgc tcaagaccgc cctggcctac gaatgcttcc aggaccagga
      241 caactcgacg ctggccctgc cgtcggacct gaggataaag accggcacgt cgggccagca
      301 gcgcgtgcag gagcaggtga tgatgaccgt caagcggcag aagcccaaga cttcccagtc
      361 gtccaccccg agccactcca accgaggttc catgtatgat ggcctggccg acaattacaa
      421 cagctgtggg accaccggcc ggagcagcta ctactcgaag ttccaggcgg ggaacggctc
      481 gtggggctat ccgatctaca atgggaccct taagcgggag gcagacaaca ggcgcttcag
      541 ctcctacagc cagatggaga gctggggccg gcagtacccc cgcagcagct gcatttcccc
      601 cggtgtcggc agcgacatct gcttcatgca gaagatgaag gccagccgca gcgagcccga
      661 cctctactgc gacccccgcg gcaccctgcg caagggcacg ctgggcagca agggcttcaa
      721 gaccgcccag aaccgctaca gcatttacag cacctgcagc ggccagaagg gggtcaagaa
      781 gtacccggcg cgcccgccct cctgcacctc caggcaggac cccgtgtacg tccagcccat
      841 ctcctgcacc aaggaccagt ccttcagcca ctcaagggcc agctccaaga tctgcagcga
      901 ggacgttgag tgcagcgggc tgaccatccc caaggccgtg cggtgcctga cctccccgga
      961 caagaagtgc caggccatcg gggcctatta catccagcac acctgcttcc aggatgagtc
     1021 tgccaagcag caggtgtacc agctgggcgg catctgcaag ctggtggacc ttctccgcag
     1081 ctccaaccag aacgtgcagc aggccgcggc tggggccctg cgcaacctgg tgttccgtag
     1141 caccacgaac aagctggaga ctcagagaca gagcggcatc cgcgaggccg tcaacctcct
     1201 gaggactacc agctgcacgg agatccagaa gcagctgacc gggctgctct ggaacctgtc
     1261 ctccaccgac gagctaaagg aggagctgat ctcggacgcc ctgcccgtcc tgacggaccg
     1321 ggtcatcatc ccgttctccg gctggtgcga tggcaacagc aacgtgccac agaaagccgt
     1381 ggacgctgag gtcttcttca atgccaccgg ctgcctgagg aacctgagct ccgcagacac
     1441 ggggcgccag accatgcgca actacacggg tctcattgac tccctcatga cctatatcca
     1501 gaaatgtgtg gcagccggcc gctgtgacga caagtctgtg gagaactgca tgtgcaccct
     1561 gcacaacctc tgctaccgcc tggacaccga ggtgcccacc cgctaccgcc agctggagca
     1621 caacgcccgc aatgcctgca ccgagaagtc ctcccccggc tgcttcagta gcaagaacgg
     1681 caggatgacg aacaacaact acgactgccc ccttcctgag gaagagccca accccaaggg
     1741 cagcagctgg ctgtaccact cgaacgccat ccgcacctac ctgaacctca tgggcaagag
     1801 caggaaggac gccaccctgg aggcctgcgc cggcgccctg cagaacctga ccgccagcaa
     1861 ggggctgatg tccagcggca tgagccagct gatcgggctg aaggagaagg gcctgcctca
     1921 catcgccaag ctcctgcagt cgggcaactc agacgtggtg cggtccggag cttccctcct
     1981 gagcaacatg tcccgccacc ccgcactgca cagggtgatg gggaaccaag tgttcccaga
     2041 ggtgaccaga cttctcagca gccataccgg ccacaccagc aactcggagg acatcctgtc
     2101 ctcgacctgc tacaccgtga ggaacctgat ggcgtcgctg ccggggatgg ccaagcagca
     2161 cttctccagc gacatggtct gcaacgtcat caacctgtgt cgcagcagtg cctcccccag
     2221 ggctgcagag gccgcccgac tcctcctggc tgacatgtgg tccagcaggg agctgcaggg
     2281 ggtcctcaga cagcaaggtt tcgataagag catgctggga accttagctg gggccagcag
     2341 cctcaggaac ttcacctccc gaatctaaga agaggctacc caagcaagtt cagcttgcag
     2401 acgtgatacg atccagctga gaagactcgg gccttgctgg aggggtattc tgtccagctg
     2461 cacagtattg ggaaatgttt aaccacagct gagagcaaac caggacgctg tggatgacaa
     2521 gaatactttc agattctttt tttttttctt gggggaactg acaggcaatg ggggttgggg
     2581 agggttgggg ggcctttctt cagttaaggg agcttacatc tgatgtcaat acttcttttg
     2641 ctgagaaacg gtacatatac atgtgtatag tgtgtgtgtg tgtgtgcgtg tgtgctgaaa
     2701 gcaggacctg aaactgcaaa gagctgtgtg agctgccgga ttgcagctcg cggtggtgga
     2761 gggactcgcc ctcacgggcg cggacaatgt gtgctttggg tgtagcttcc ccgtcgtcct
     2821 gagctgtgtg tgccggggca ggggccacgc cagcgccagg cccacaggga cctctgcagg
     2881 gggcggggcg cggtggggaa tatgtgaggc cgggggctca acccccgcta agagccagct
     2941 ctgcaggaag ggaggttgac ggggttcggt gtatctcctg ggaagatgta gttgtgcgct
     3001 tgtgcggccc agcccccagt gccacgcggc cgtctgcagg atgggccagg acaggcacgc
     3061 tggcttcgct gtgtgaaggc tgtcccgagg gtaggtgcca gagaggggcc ctggccattc
     3121 tcgcgggctg tgtacccgtc agagcgggct cagcctggga agcccctgcc ttccgggggc
     3181 ttggaatcca cttgttgcag gagaaagaag gaagaatggt gctcaaagcc cagcagctgt
     3241 tcagggaatg gcagcttggt cctcgtattc ccagcggagg ggcaggctgg gctgggcagg
     3301 gagtcagcca ggagggtcct gccctgtgcg cctgccgaga tccaagcgag ggagtgtttt
     3361 gggtcccagg agactcggag gaagggaatt cgggtagaac aggaagggga gccgcccccg
     3421 tcccagccag aggccgctcg cttcttcccc gaccccagcc ctctgtctct actttgtgca
     3481 aaccgcgggg gacgtgataa gaggcccacc agggacactg gccaccccag accccagatt
     3541 cctgtgcatt tcagatgaga agtagaggag gggcctccag agaagggctg tggaaatggt
     3601 ccttggtctg cactgtagga cagggcagga cacagcgtcc ccgccgagcg gcactggtgg
     3661 tgatcgaggg gaactggctg cctcgtcctc cctcctcccg gcctggagat ccccccacgc
     3721 cccgtccagc cccaccgctc accccagcag tcagagcctc tgcactgagg accctcctga
     3781 tgagaggtgt ggcagcagga cgggactagg gcgggggtgg ggaacagacc cgaggtgacg
     3841 ggccacgcag ccaggcgtgc tctggcgctg ggtctgtgcc gcgtcctccc cgcccctcgt
     3901 ggtggtggct tgcctctctc tcagggcccg tggggagctg gtgccagtag actgtcccct
     3961 ctgccagccc tcagggtcca gaggaactgg tttctcaaag aaacacgtac ggagccaggc
     4021 agtgttgtaa gcactctgga tacgtcagtg aacggagagg ccacacccct gtctcacgtt
     4081 cttctggagg gaagaggggc cctggggtcc ctggctttag gggtccccag tgtgagagga
     4141 ccatccagtc cagtcagggt gagagggaac tagccgatga ccctgtgggg gtgccccttc
     4201 cctcggcttt ccttcctccg cagggttagg agccggggcc cagcttctgc cttggggatg
     4261 agcagctttt cagacccccg tgggccaggt ggaccgtcag gccaggcctg gctttggtca
     4321 cctctctcat gacttctgag gccagccacc tgggcctgtc actttggaag aggcagacct
     4381 tggaggggcc tgtggataaa tttcctccag aaggagcacg gggtccgctg aggtacagct
     4441 caggatgtga ggtacacgtc ggccgcgcgc cgtcgggctc gacacccgga acaggacagt
     4501 ccaacgccga gtgggggagg accctgtcct ccctgtcgct gccccgaccc agggcctcct
     4561 gcgcttacga cagacccggt cactggccac cggcagccgg tgccgcgggg ccgacctagc
     4621 agcgcagact cagctgctcc caggacgcag aggcagagct ggtcccatcc accctggagg
     4681 ctggctgagg cgggggcagc tgggacagtg aggaaggggc tctggctggg cagggaggga
     4741 gggtggggcg ctctgcagcc cgtccccccg cccccgctcc atgtttgcgg aggaacctag
     4801 cgctggccag gcccgtttcc ctggggggta cgctatgcgt ttgctttttt tggaaatata
     4861 ggaaatcaat aaattgctgg catttctttg aa
//
LOCUS       XM_032606541             923 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proteasome 20S subunit beta 4 (PSMB4),
            mRNA.
ACCESSION   XM_032606541
VERSION     XM_032606541.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..923
                     /gene="PSMB4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 mRNAs, 2 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740696"
     CDS             38..817
                     /gene="PSMB4"
                     /codon_start=1
                     /product="proteasome subunit beta type-4"
                     /protein_id="XP_032462432.1"
                     /db_xref="GeneID:116740696"
                     /translation="MEALLESRCGPAPGQFYRILPTPGSSVDPASALYGGPITRTQNP
                     MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY
                     LKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRATYSRRSKMNPLWNTMVIGGYADGES
                     FLGYVDMLGVAYEAPSVATGYGAYLAQPLLREVLEKKPVLSQTEAQELVERCMRVLYY
                     RDARSYNRFQIATVTEKGVEIEGPLSAETSWDIAHMISGFE"
     misc_feature    176..763
                     /gene="PSMB4"
                     /note="proteasome beta type-4 subunit. The 20S proteasome,
                     multisubunit proteolytic complex, is the central enzyme of
                     nonlysosomal protein degradation in both the cytosol and
                     nucleus. It is composed of 28 subunits arranged as four
                     homoheptameric rings that...; Region:
                     proteasome_beta_type_4; cd03760"
                     /db_xref="CDD:239729"
     misc_feature    order(182..184,230..232,236..238,278..280,578..580,
                     695..697,704..709)
                     /gene="PSMB4"
                     /note="active site"
                     /db_xref="CDD:239729"
     misc_feature    order(236..238,245..247,251..268,326..328,332..334,
                     377..379,416..418,425..430,434..439,446..448,455..457,
                     533..535,539..541,545..556,563..565,587..592,596..601,
                     608..616,668..670,689..700,707..712)
                     /gene="PSMB4"
                     /note="beta subunit interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239729"
ORIGIN      
        1 cgccaacgct ttcgtttctc gtgctaccgt gactaagatg gaagcgcttt tggagtcgcg
       61 gtgcggaccg gcccctgggc agttttaccg catcctgccc actcccggtt cctctgtgga
      121 tccggcgtcc gcgctctacg ggggtccgat tacgcgcacc cagaacccca tggtgaccgg
      181 gacctcggtc ctgggcgtca agtttgaggg cggagtggtg attgcagcag acatgctggg
      241 ctcctacggc tccttggctc gtttccgcaa catctctcgc attatgcgag tcaacaacag
      301 caccatgctg ggtgcttccg gagactacgc tgatttccaa tatttgaagc aagttctcgg
      361 ccaaatggtg atcgatgagg agctgttggg agatggacac agctatagcc ctaaagctat
      421 tcattcatgg ctgaccaggg ctacgtacag ccggcgctcc aagatgaacc ccctgtggaa
      481 caccatggtc attggaggct atgctgatgg agagagcttc ctgggttacg tggacatgct
      541 tggtgtagcc tatgaagccc cttcggtggc caccggttat ggtgcatact tggctcagcc
      601 tctgctgcga gaagttctgg agaagaagcc agtgctgagc cagactgagg cccaagagct
      661 agtggaacgc tgcatgcgag tgctgtacta tcgagatgcc cgttcttata accggtttca
      721 aattgccact gtaactgaaa aaggtgttga aatagaggga cccctgtctg cagagaccag
      781 ctgggatatt gcccacatga tcagtggctt tgaatgaaat acagaggcat tatccagaac
      841 tgaagttgta cccttcttct aactttgaac ttggctggtt caaaggtatt attcttttgt
      901 aaaataaatc ctttgaaaca ctt
//
LOCUS       XM_032606565            3164 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X1,
            mRNA.
ACCESSION   XM_032606565
VERSION     XM_032606565.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3164
                     /gene="ST6GALNAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 13
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740707"
     CDS             121..1038
                     /gene="ST6GALNAC3"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3 isoform X1"
                     /protein_id="XP_032462456.1"
                     /db_xref="GeneID:116740707"
                     /translation="MACILKRKSVIAVSFVAAFLFLLVVRLVNEVNFPLLLNCFGQPG
                     AKWIPFSYTYRRPLRTHYGYINVRTQEPLQLDCNLCAIVSNSGQMVGQKVGNEIDQSS
                     CIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRN
                     MRKDGNGIVYNMLKKTVDIYPNAQIYVTTEKRMSYCDGVFKKETGKDRVQSGSYLSTG
                     WFTFILAMDACYGIHVYGMINDTYCKTEGYRKVPYHYYEQGRDECDEYFLHEHAPYGG
                     HRFITEKKVFAKWAKKHRIIFTHPNWTVS"
     misc_feature    349..1026
                     /gene="ST6GALNAC3"
                     /note="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3; Region: GT29_ST6GALNAC3;
                     cd23975"
                     /db_xref="CDD:467703"
     misc_feature    order(370..378,439..444,505..507,766..774,826..831,
                     874..882,949..951)
                     /gene="ST6GALNAC3"
                     /note="putative active site [active]"
                     /db_xref="CDD:467703"
ORIGIN      
        1 ggatctgcgg gaatgtgggc tggagcggtc ctgcagcggt accaacctcc agcctgtcgc
       61 ctggactgcc cctgacccag gcgccccgct gctcggtggc aggagggccg gcggagcgcc
      121 atggcctgca tcctgaagag aaagtctgtg attgcagtga gcttcgtagc agcgttcctc
      181 ttcctgctgg ttgtgcgcct tgtgaatgaa gtgaattttc cattgctact aaactgcttc
      241 ggacaacctg gtgcaaaatg gataccattc tcctatacat acaggcggcc ccttcgaact
      301 cactatggat acataaatgt gaggacgcaa gagcctttgc aactggactg taacctttgt
      361 gccatagtgt caaactcagg tcagatggtt ggccagaagg tggggaatga gatagatcag
      421 tcttcctgca tttggagaat gaacaatgcc cccaccaagg gctatgaaga agatgttggc
      481 cgcatgacaa tgattcgagt tgtatcccat accagcgttc ctcttttgct gaaaaaccct
      541 gattattttt tcaaggaagc aaatgctact atttatgtta tttggggccc tttccgcaat
      601 atgaggaaag acggcaatgg cattgtttac aacatgttga aaaagactgt tgacatctat
      661 cccaatgccc agatttacgt gaccacggag aaacgcatga gttactgtga tggagtgttt
      721 aagaaggaaa ctgggaaaga cagagtccag tctggctctt atctcagcac gggttggttt
      781 accttcattc tggccatgga tgcctgttat ggcattcacg tctacgggat gataaatgac
      841 acctattgca agacagaagg gtatagaaaa gtcccctacc attactatga acaaggaaga
      901 gacgaatgtg atgaatattt tctccatgaa cacgccccat atggggggca taggtttatc
      961 actgaaaaga aagtgtttgc taaatgggcc aagaaacaca ggataatatt tacacaccca
     1021 aactggacag tgtcttgatg ttggctttcc tgaccttgcc acatcacttg acatgatcat
     1081 gatactgcaa ctgtgatgct aatgatgctg atgctggtga tgataaaggc aacaacaatg
     1141 atgatcaagt ttctgtacat tctcagatat ggacagtgat tctgccagta atttgaactt
     1201 gggatttcgt ggagggtagt cgtgctcatt acgttctttc tgaagggtca acatttcata
     1261 ctgcacttta taatctaact ggaattgaaa taaaggccag taacatgaca agagtgacct
     1321 aagaaatggg aagattatcc ttcaagatag ttgcccagga ttcttggaca gtgagtaatt
     1381 tccaaaagcc ctgggatttg gtctcatgag gcaaggttat tgactctgct gtctgttgaa
     1441 cctgagcagc tccgccatct tgaagaatgg ttgattgtca aacactgacc caagaaatgc
     1501 tttctgggta caagggtctt gccacagtaa ctagttggcc tgggggcagg aaaggaatct
     1561 cttcctgact taccatcttc ctacagtacc tcctacagct aaagcctcag gccatttcct
     1621 aattcacaag gaagatatgg acatcctacc caccgggatt acttgattat ctcaaacact
     1681 tcattcaaaa tgggctaact agcaactctt tttgaatttc tactctcatc actccattct
     1741 tactaccccc caaaatataa ctaaacatat tactagaatg atctgtatta atgtttagtt
     1801 atttttggtt gagtgctaaa tatttgagaa agctattcaa caagtaagat accaacactg
     1861 tagtaacata gactgtgaaa acattcttaa aacataacca aaagggttta ctaactctgc
     1921 ttcaacatcc aacaacacaa aattttatgc tttttaaaat catgaaacag ggaaagcaaa
     1981 gcatattttt acatcaattt gtatcctacc atacttcata atatatattt gtatatacaa
     2041 atttctattt tataggccca agatgtgtct ctccacacat ttcattatca ttgccaagtg
     2101 ccaactgtta gacatggaga ggaaatgatt ccttgtattt aatctgacca gagcttttgc
     2161 cttcttgggg tttattttcc ccaaactgta tcagttgcta taccataata acaacaataa
     2221 taattacctt gatgtctaaa gtgctttgtc atgtagagtc ctttcacata tgctgtccca
     2281 tgtgatgccc gtgaccaccc cgtcaggcta ttgcctatgc attctgacat attagcagat
     2341 gatctctaat ttgttaattg ctactatata ttccagattg ctccccttcc taatatttgt
     2401 atagaataga gtttatgtag actagtaacc aattgatttc agtgccaaat acaatgtatt
     2461 atatcaggat tatgcaaaaa gtatcccaag gatggccctg gccataaact aggaatcctg
     2521 tgaacaaaag tactttgaat tttttttttt tcgtggctct atttaggtgg ggaaaagatg
     2581 aggtagcaga gacaacagga agaaataaag gtaaagaaat acagtttctc gtccccatct
     2641 taagattact ttgttctcca tatattcatt gctcattaaa tattagaggg ttgatttgct
     2701 gagagagtag ctgagagacc aaaaacatcc ttaccaatga ttcaaaagac aaaagctggg
     2761 cttaacttac agcctgtttt ggaggctgga agtgatgatg catttcacct tgggagccct
     2821 ttccaggtct ctaccagtgc taagtcccat gataggctac ctttaaaatg gtccatcttg
     2881 gacaaaaacc tctttcctgc tcttttctac cattttaata cctcaatatt cacatccata
     2941 aaaatgacca agtgccactt acattgctgg aactattatt gttgtcattc ttttgttgct
     3001 tccttatgtg attttcagtt ctacgtatgc tagtttttgt gagctaatga tggatagaaa
     3061 tgcccactca aagaaaaata aacagatgaa aatgtcaaaa ttgtaataca gactgttttt
     3121 cccccctgtt gtgatacaga agttccactt ttaaataaaa agga
//
LOCUS       XM_032606574            1271 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X2,
            mRNA.
ACCESSION   XM_032606574
VERSION     XM_032606574.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1271
                     /gene="ST6GALNAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740707"
     CDS             121..900
                     /gene="ST6GALNAC3"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3 isoform X2"
                     /protein_id="XP_032462465.1"
                     /db_xref="GeneID:116740707"
                     /translation="MACILKRKSVIAVSFVAAFLFLLVVRLVNEVNFPLLLNCFGQPG
                     AKWIPFSYTYRRPLRTHYGYINVRTQEPLQLDCNLCAIVSNSGQMVGQKVGNEIDQSS
                     CIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRN
                     MRKDGNGIVYNMLKKTVDIYPNAQIYVTTEKRMSYCDGVFKKETGKDSLIPSGASLNT
                     TNRPKKTTMLEMSRTDGFGKIWLDDKRSTKTTSRVAIFTMI"
     misc_feature    349..>774
                     /gene="ST6GALNAC3"
                     /note="glycosyltransferase family 29; Region: GT29;
                     cl45931"
                     /db_xref="CDD:480271"
ORIGIN      
        1 ggatctgcgg gaatgtgggc tggagcggtc ctgcagcggt accaacctcc agcctgtcgc
       61 ctggactgcc cctgacccag gcgccccgct gctcggtggc aggagggccg gcggagcgcc
      121 atggcctgca tcctgaagag aaagtctgtg attgcagtga gcttcgtagc agcgttcctc
      181 ttcctgctgg ttgtgcgcct tgtgaatgaa gtgaattttc cattgctact aaactgcttc
      241 ggacaacctg gtgcaaaatg gataccattc tcctatacat acaggcggcc ccttcgaact
      301 cactatggat acataaatgt gaggacgcaa gagcctttgc aactggactg taacctttgt
      361 gccatagtgt caaactcagg tcagatggtt ggccagaagg tggggaatga gatagatcag
      421 tcttcctgca tttggagaat gaacaatgcc cccaccaagg gctatgaaga agatgttggc
      481 cgcatgacaa tgattcgagt tgtatcccat accagcgttc ctcttttgct gaaaaaccct
      541 gattattttt tcaaggaagc aaatgctact atttatgtta tttggggccc tttccgcaat
      601 atgaggaaag acggcaatgg cattgtttac aacatgttga aaaagactgt tgacatctat
      661 cccaatgccc agatttacgt gaccacggag aaacgcatga gttactgtga tggagtgttt
      721 aagaaggaaa ctgggaaaga cagtctaatc ccgtctggtg cttcactgaa tactacaaac
      781 agaccaaaga agacaactat gctagaaatg agcagaacag atggttttgg taaaatctgg
      841 ttggatgaca aaaggtcgac caaaacgacc tcaagggtag caatcttcac aatgatttaa
      901 atctgtaccc taaatttagc tgtgtggatt ttattgttaa agattttccc atagtgacct
      961 gatgttcatt gccagatttc aaagaagaat attttttagc tttttatgaa ggaaaatgtc
     1021 agacttatag ggagactaat gctgtaatga actgctgtat accacagctc agattgaata
     1081 attattaact catagccaat cttgttctat ctatacccct gtacactttc tccctcccca
     1141 aggattattt tgtcttgttc tatctatacc cctgtacact ttctccctcc ccaaggatta
     1201 ttttgaagca aatgccagat atcatattat tttattcaga aatatttcag catgtatctc
     1261 taaaagataa a
//
LOCUS       XM_032606582             898 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X3,
            mRNA.
ACCESSION   XM_032606582
VERSION     XM_032606582.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..898
                     /gene="ST6GALNAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740707"
     CDS             121..873
                     /gene="ST6GALNAC3"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3 isoform X3"
                     /protein_id="XP_032462473.1"
                     /db_xref="GeneID:116740707"
                     /translation="MACILKRKSVIAVSFVAAFLFLLVVRLVNEVNFPLLLNCFGQPG
                     AKWIPFSYTYRRPLRTHYGYINVRTQEPLQLDCNLCAIVSNSGQMVGQKVGNEIDQSS
                     CIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRN
                     MRKDGNGIVYNMLKKTVDIYPNAQIYVTTEKRMSYCDGVFKKETGKDRVQSGSYLSTG
                     WFTFILAMDACYGIHVYGMINDTYCNIFLLVG"
     misc_feature    349..>849
                     /gene="ST6GALNAC3"
                     /note="glycosyltransferase family 29; Region: GT29;
                     cl45931"
                     /db_xref="CDD:480271"
ORIGIN      
        1 ggatctgcgg gaatgtgggc tggagcggtc ctgcagcggt accaacctcc agcctgtcgc
       61 ctggactgcc cctgacccag gcgccccgct gctcggtggc aggagggccg gcggagcgcc
      121 atggcctgca tcctgaagag aaagtctgtg attgcagtga gcttcgtagc agcgttcctc
      181 ttcctgctgg ttgtgcgcct tgtgaatgaa gtgaattttc cattgctact aaactgcttc
      241 ggacaacctg gtgcaaaatg gataccattc tcctatacat acaggcggcc ccttcgaact
      301 cactatggat acataaatgt gaggacgcaa gagcctttgc aactggactg taacctttgt
      361 gccatagtgt caaactcagg tcagatggtt ggccagaagg tggggaatga gatagatcag
      421 tcttcctgca tttggagaat gaacaatgcc cccaccaagg gctatgaaga agatgttggc
      481 cgcatgacaa tgattcgagt tgtatcccat accagcgttc ctcttttgct gaaaaaccct
      541 gattattttt tcaaggaagc aaatgctact atttatgtta tttggggccc tttccgcaat
      601 atgaggaaag acggcaatgg cattgtttac aacatgttga aaaagactgt tgacatctat
      661 cccaatgccc agatttacgt gaccacggag aaacgcatga gttactgtga tggagtgttt
      721 aagaaggaaa ctgggaaaga cagagtccag tctggctctt atctcagcac gggttggttt
      781 accttcattc tggccatgga tgcctgttat ggcattcacg tctacgggat gataaatgac
      841 acctattgca atatattcct gctggtggga tagtttctaa gtagataatg aaacaaac
//
LOCUS       XM_032606587            3196 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X4,
            mRNA.
ACCESSION   XM_032606587
VERSION     XM_032606587.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3196
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3196
                     /gene="ST6GALNAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116740707"
     CDS             121..864
                     /gene="ST6GALNAC3"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3 isoform X4"
                     /protein_id="XP_032462478.1"
                     /db_xref="GeneID:116740707"
                     /translation="MACILKRKSVIAVSFVAAFLFLLVVRLVNEVNFPLLLNCFGQPG
                     AKWIPFSYTYRRPLRTHYGYINVRTQEPLQLDCNLCAIVSNSGQMVGQKVGNEIDQSS
                     CIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRN
                     MRKDGNGIVYNMLKKTVDIYPNAQIYVTTEKRMSYCDGVFKKETGKDRGLEVNLQHLQ
                     ESSLALISARVGLPSFWPWMPVMAFTSTG"
     misc_feature    349..>744
                     /gene="ST6GALNAC3"
                     /note="glycosyltransferase family 29; Region: GT29;
                     cl45931"
                     /db_xref="CDD:480271"
ORIGIN      
        1 ggatctgcgg gaatgtgggc tggagcggtc ctgcagcggt accaacctcc agcctgtcgc
       61 ctggactgcc cctgacccag gcgccccgct gctcggtggc aggagggccg gcggagcgcc
      121 atggcctgca tcctgaagag aaagtctgtg attgcagtga gcttcgtagc agcgttcctc
      181 ttcctgctgg ttgtgcgcct tgtgaatgaa gtgaattttc cattgctact aaactgcttc
      241 ggacaacctg gtgcaaaatg gataccattc tcctatacat acaggcggcc ccttcgaact
      301 cactatggat acataaatgt gaggacgcaa gagcctttgc aactggactg taacctttgt
      361 gccatagtgt caaactcagg tcagatggtt ggccagaagg tggggaatga gatagatcag
      421 tcttcctgca tttggagaat gaacaatgcc cccaccaagg gctatgaaga agatgttggc
      481 cgcatgacaa tgattcgagt tgtatcccat accagcgttc ctcttttgct gaaaaaccct
      541 gattattttt tcaaggaagc aaatgctact atttatgtta tttggggccc tttccgcaat
      601 atgaggaaag acggcaatgg cattgtttac aacatgttga aaaagactgt tgacatctat
      661 cccaatgccc agatttacgt gaccacggag aaacgcatga gttactgtga tggagtgttt
      721 aagaaggaaa ctgggaaaga caggggtctg gaagtaaacc tgcaacatct ccaagagtcc
      781 agtctggctc ttatctcagc acgggttggt ttaccttcat tctggccatg gatgcctgtt
      841 atggcattca cgtctacggg atgataaatg acacctattg caagacagaa gggtatagaa
      901 aagtccccta ccattactat gaacaaggaa gagacgaatg tgatgaatat tttctccatg
      961 aacacgcccc atatgggggg cataggttta tcactgaaaa gaaagtgttt gctaaatggg
     1021 ccaagaaaca caggataata tttacacacc caaactggac agtgtcttga tgttggcttt
     1081 cctgaccttg ccacatcact tgacatgatc atgatactgc aactgtgatg ctaatgatgc
     1141 tgatgctggt gatgataaag gcaacaacaa tgatgatcaa gtttctgtac attctcagat
     1201 atggacagtg attctgccag taatttgaac ttgggatttc gtggagggta gtcgtgctca
     1261 ttacgttctt tctgaagggt caacatttca tactgcactt tataatctaa ctggaattga
     1321 aataaaggcc agtaacatga caagagtgac ctaagaaatg ggaagattat ccttcaagat
     1381 agttgcccag gattcttgga cagtgagtaa tttccaaaag ccctgggatt tggtctcatg
     1441 aggcaaggtt attgactctg ctgtctgttg aacctgagca gctccgccat cttgaagaat
     1501 ggttgattgt caaacactga cccaagaaat gctttctggg tacaagggtc ttgccacagt
     1561 aactagttgg cctgggggca ggaaaggaat ctcttcctga cttaccatct tcctacagta
     1621 cctcctacag ctaaagcctc aggccatttc ctaattcaca aggaagatat ggacatccta
     1681 cccaccggga ttacttgatt atctcaaaca cttcattcaa aatgggctaa ctagcaactc
     1741 tttttgaatt tctactctca tcactccatt cttactaccc cccaaaatat aactaaacat
     1801 attactagaa tgatctgtat taatgtttag ttatttttgg ttgagtgcta aatatttgag
     1861 aaagctattc aacaagtaag ataccaacac tgtagtaaca tagactgtga aaacattctt
     1921 aaaacataac caaaagggtt tactaactct gcttcaacat ccaacaacac aaaattttat
     1981 gctttttaaa atcatgaaac agggaaagca aagcatattt ttacatcaat ttgtatccta
     2041 ccatacttca taatatatat ttgtatatac aaatttctat tttataggcc caagatgtgt
     2101 ctctccacac atttcattat cattgccaag tgccaactgt tagacatgga gaggaaatga
     2161 ttccttgtat ttaatctgac cagagctttt gccttcttgg ggtttatttt ccccaaactg
     2221 tatcagttgc tataccataa taacaacaat aataattacc ttgatgtcta aagtgctttg
     2281 tcatgtagag tcctttcaca tatgctgtcc catgtgatgc ccgtgaccac cccgtcaggc
     2341 tattgcctat gcattctgac atattagcag atgatctcta atttgttaat tgctactata
     2401 tattccagat tgctcccctt cctaatattt gtatagaata gagtttatgt agactagtaa
     2461 ccaattgatt tcagtgccaa atacaatgta ttatatcagg attatgcaaa aagtatccca
     2521 aggatggccc tggccataaa ctaggaatcc tgtgaacaaa agtactttga attttttttt
     2581 tttcgtggct ctatttaggt ggggaaaaga tgaggtagca gagacaacag gaagaaataa
     2641 aggtaaagaa atacagtttc tcgtccccat cttaagatta ctttgttctc catatattca
     2701 ttgctcatta aatattagag ggttgatttg ctgagagagt agctgagaga ccaaaaacat
     2761 ccttaccaat gattcaaaag acaaaagctg ggcttaactt acagcctgtt ttggaggctg
     2821 gaagtgatga tgcatttcac cttgggagcc ctttccaggt ctctaccagt gctaagtccc
     2881 atgataggct acctttaaaa tggtccatct tggacaaaaa cctctttcct gctcttttct
     2941 accattttaa tacctcaata ttcacatcca taaaaatgac caagtgccac ttacattgct
     3001 ggaactatta ttgttgtcat tcttttgttg cttccttatg tgattttcag ttctacgtat
     3061 gctagttttt gtgagctaat gatggataga aatgcccact caaagaaaaa taaacagatg
     3121 aaaatgtcaa aattgtaata cagactgttt ttcccccctg ttgtgataca gaagttccac
     3181 ttttaaataa aaagga
//
LOCUS       XM_032606594             930 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X5,
            mRNA.
ACCESSION   XM_032606594
VERSION     XM_032606594.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..930
                     /gene="ST6GALNAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740707"
     CDS             121..864
                     /gene="ST6GALNAC3"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3 isoform X4"
                     /protein_id="XP_032462485.1"
                     /db_xref="GeneID:116740707"
                     /translation="MACILKRKSVIAVSFVAAFLFLLVVRLVNEVNFPLLLNCFGQPG
                     AKWIPFSYTYRRPLRTHYGYINVRTQEPLQLDCNLCAIVSNSGQMVGQKVGNEIDQSS
                     CIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRN
                     MRKDGNGIVYNMLKKTVDIYPNAQIYVTTEKRMSYCDGVFKKETGKDRGLEVNLQHLQ
                     ESSLALISARVGLPSFWPWMPVMAFTSTG"
     misc_feature    349..>744
                     /gene="ST6GALNAC3"
                     /note="glycosyltransferase family 29; Region: GT29;
                     cl45931"
                     /db_xref="CDD:480271"
ORIGIN      
        1 ggatctgcgg gaatgtgggc tggagcggtc ctgcagcggt accaacctcc agcctgtcgc
       61 ctggactgcc cctgacccag gcgccccgct gctcggtggc aggagggccg gcggagcgcc
      121 atggcctgca tcctgaagag aaagtctgtg attgcagtga gcttcgtagc agcgttcctc
      181 ttcctgctgg ttgtgcgcct tgtgaatgaa gtgaattttc cattgctact aaactgcttc
      241 ggacaacctg gtgcaaaatg gataccattc tcctatacat acaggcggcc ccttcgaact
      301 cactatggat acataaatgt gaggacgcaa gagcctttgc aactggactg taacctttgt
      361 gccatagtgt caaactcagg tcagatggtt ggccagaagg tggggaatga gatagatcag
      421 tcttcctgca tttggagaat gaacaatgcc cccaccaagg gctatgaaga agatgttggc
      481 cgcatgacaa tgattcgagt tgtatcccat accagcgttc ctcttttgct gaaaaaccct
      541 gattattttt tcaaggaagc aaatgctact atttatgtta tttggggccc tttccgcaat
      601 atgaggaaag acggcaatgg cattgtttac aacatgttga aaaagactgt tgacatctat
      661 cccaatgccc agatttacgt gaccacggag aaacgcatga gttactgtga tggagtgttt
      721 aagaaggaaa ctgggaaaga caggggtctg gaagtaaacc tgcaacatct ccaagagtcc
      781 agtctggctc ttatctcagc acgggttggt ttaccttcat tctggccatg gatgcctgtt
      841 atggcattca cgtctacggg atgataaatg acacctattg caatatattc ctgctggtgg
      901 gatagtttct aagtagataa tgaaacaaac
//
LOCUS       XR_004345944            1125 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X6,
            misc_RNA.
ACCESSION   XR_004345944
VERSION     XR_004345944.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1125
                     /gene="ST6GALNAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740707"
     misc_RNA        1..1125
                     /gene="ST6GALNAC3"
                     /product="ST6 N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3, transcript variant X6"
                     /db_xref="GeneID:116740707"
ORIGIN      
        1 ggatctgcgg gaatgtgggc tggagcggtc ctgcagcggt accaacctcc agcctgtcgc
       61 ctggactgcc cctgacccag gcgccccgct gctcggtggc aggagggccg gcggagcgcc
      121 atggcctgca tcctgaagag aaagtctgtg attgcagtga gcttcgtagc agcgttcctc
      181 ttcctgctgg ttgtgcgcct tgtgaatgaa gtgaattttc cattgctact aaactgcttc
      241 ggacaacctg gtgcaaaatg gataccattc tcctatacat acaggcggcc ccttcgaact
      301 cactatggat acataaatgt gaggacgcaa gagcctttgc aactggactg taacctttgt
      361 gccatagtgt caaactcagg tcagatggtt ggccagaagg tggggaatga gatagatcag
      421 tcttcctgca tttggagaat gaacaatgcc cccaccaagg gctatgaaga agatgttggc
      481 cgcatgacaa tgattcgagt tgtatcccat accagcgttc ctcttttgct gaaaaaccct
      541 gattattttt tcaaggaagc aaatgctact atttatgtta tttggggccc tttccgcaat
      601 atgaggaaag acggcaatgg cattgtttac aacatgttga aaaagactgt tgacatctat
      661 cccaatgccc agatttacgt gaccacggag aaacgcatga gttactgtga tggagtgttt
      721 aagaaggaaa ctgggaaaga cagcacagaa gagtggctgg aaaatgcata agtgactcat
      781 tggaagagtc ttcctggaaa ccaagagctc caattaatgt tgattctact cacgatctga
      841 gaaatgtcta tactaaaata tgtctccttt tgttcctgcc ttggagactt cagaaaaata
      901 gaagttcact ttcataaaaa tgaagaacat cttgacaagt aaaataacca actgctaaat
      961 tcatatattt gcctacatag tgagcagctt cttctaagaa actccaaagg gaccaaaagc
     1021 agggcatttc atggttcctt gttacctaac ttacaaagca ctcatttccc tgtgtttaac
     1081 tttgttgtca ttgctactga gtaaaaccca tttctattac ataca
//
LOCUS       XM_032606607            1868 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X7,
            mRNA.
ACCESSION   XM_032606607
VERSION     XM_032606607.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1868
                     /gene="ST6GALNAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740707"
     CDS             121..771
                     /gene="ST6GALNAC3"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3 isoform X5"
                     /protein_id="XP_032462498.1"
                     /db_xref="GeneID:116740707"
                     /translation="MACILKRKSVIAVSFVAAFLFLLVVRLVNEVNFPLLLNCFGQPG
                     AKWIPFSYTYRRPLRTHYGYINVRTQEPLQLDCNLCAIVSNSGQMVGQKVGNEIDQSS
                     CIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRN
                     MRKDGNGIVYNMLKKTVDIYPNAQIYVTTEKRMSYCDGVFKKETGKDSTEEWLENA"
     misc_feature    349..>741
                     /gene="ST6GALNAC3"
                     /note="glycosyltransferase family 29; Region: GT29;
                     cl45931"
                     /db_xref="CDD:480271"
ORIGIN      
        1 ggatctgcgg gaatgtgggc tggagcggtc ctgcagcggt accaacctcc agcctgtcgc
       61 ctggactgcc cctgacccag gcgccccgct gctcggtggc aggagggccg gcggagcgcc
      121 atggcctgca tcctgaagag aaagtctgtg attgcagtga gcttcgtagc agcgttcctc
      181 ttcctgctgg ttgtgcgcct tgtgaatgaa gtgaattttc cattgctact aaactgcttc
      241 ggacaacctg gtgcaaaatg gataccattc tcctatacat acaggcggcc ccttcgaact
      301 cactatggat acataaatgt gaggacgcaa gagcctttgc aactggactg taacctttgt
      361 gccatagtgt caaactcagg tcagatggtt ggccagaagg tggggaatga gatagatcag
      421 tcttcctgca tttggagaat gaacaatgcc cccaccaagg gctatgaaga agatgttggc
      481 cgcatgacaa tgattcgagt tgtatcccat accagcgttc ctcttttgct gaaaaaccct
      541 gattattttt tcaaggaagc aaatgctact atttatgtta tttggggccc tttccgcaat
      601 atgaggaaag acggcaatgg cattgtttac aacatgttga aaaagactgt tgacatctat
      661 cccaatgccc agatttacgt gaccacggag aaacgcatga gttactgtga tggagtgttt
      721 aagaaggaaa ctgggaaaga cagcacagaa gagtggctgg aaaatgcata agtgactcat
      781 tggaagagtc ttcctggaaa ccaagagctc caattaatgt tgattctact cacgatctga
      841 gaaatgtcta tactaaagta tagaaatatt tgcataattg aagtaatatc tcagtaattg
      901 ttgatatgct ctatcatctg tgtttgttgc ttatactggg ccatgttcga ttaccacaac
      961 attctaggat tcgtttaaag tatgtaaagg tcagtttctt cttttgttat tgaggatgag
     1021 gaagccactg atagtcctaa gagctgttga gtatgaaggt ggcctggtgt aactggcagg
     1081 tcctgttgtt gaattatccc cagagcctaa ctgtccttgt cctggaacca attcagctgc
     1141 ctgggttagt gaaataattc atctgtactg gtaggtgaaa tgttaccttt ggtatcgtgc
     1201 tcatgtttgt actacacatg attttgagcc cacatactct ctggaaggta aatcaaatgc
     1261 cccacaagac tcaatcacca tgaagattga aagggctttt tctttacagc ccattcatgt
     1321 gatactgtta ggagaatttt gaaatatatg cactaggttc tgaaaaggct cctgtggctc
     1381 agagatagca tattgtcctg ttccttgttt ttgctgaagc ttatagaaac cactagagta
     1441 aagctccatg taaattgcta aggcatcaaa tcagaactgt ccttgggcat tgtaacattg
     1501 cagaaaatgt catttttttt tttagttctc tacttttttt ttttcttttc agaataagca
     1561 ctatttgttt atggagtaaa aagctcctct ttctccacag atatgtctcc ttttgttcct
     1621 gccttggaga cttcagaaaa atagaagttc actttcataa aaatgaagaa catcttgaca
     1681 agtaaaataa ccaactgcta aattcatata tttgcctaca tagtgagcag cttcttctaa
     1741 gaaactccaa agggaccaaa agcagggcat ttcatggttc cttgttacct aacttacaaa
     1801 gcactcattt ccctgtgttt aactttgttg tcattgctac tgagtaaaac ccatttctat
     1861 tacataca
//
LOCUS       XM_032606615             819 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X8,
            mRNA.
ACCESSION   XM_032606615
VERSION     XM_032606615.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..819
                     /gene="ST6GALNAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740707"
     CDS             121..753
                     /gene="ST6GALNAC3"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 3 isoform X6"
                     /protein_id="XP_032462506.1"
                     /db_xref="GeneID:116740707"
                     /translation="MACILKRKSVIAVSFVAAFLFLLVVRLVNEVNFPLLLNCFGQPG
                     AKWIPFSYTYRRPLRTHYGYINVRTQEPLQLDCNLCAIVSNSGQMVGQKVGNEIDQSS
                     CIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRN
                     MRKDGNGIVYNMLKKTVDIYPNAQIYVTTEKRMSYCDGVFKKETGKDSEF"
     misc_feature    349..>741
                     /gene="ST6GALNAC3"
                     /note="glycosyltransferase family 29; Region: GT29;
                     cl45931"
                     /db_xref="CDD:480271"
ORIGIN      
        1 ggatctgcgg gaatgtgggc tggagcggtc ctgcagcggt accaacctcc agcctgtcgc
       61 ctggactgcc cctgacccag gcgccccgct gctcggtggc aggagggccg gcggagcgcc
      121 atggcctgca tcctgaagag aaagtctgtg attgcagtga gcttcgtagc agcgttcctc
      181 ttcctgctgg ttgtgcgcct tgtgaatgaa gtgaattttc cattgctact aaactgcttc
      241 ggacaacctg gtgcaaaatg gataccattc tcctatacat acaggcggcc ccttcgaact
      301 cactatggat acataaatgt gaggacgcaa gagcctttgc aactggactg taacctttgt
      361 gccatagtgt caaactcagg tcagatggtt ggccagaagg tggggaatga gatagatcag
      421 tcttcctgca tttggagaat gaacaatgcc cccaccaagg gctatgaaga agatgttggc
      481 cgcatgacaa tgattcgagt tgtatcccat accagcgttc ctcttttgct gaaaaaccct
      541 gattattttt tcaaggaagc aaatgctact atttatgtta tttggggccc tttccgcaat
      601 atgaggaaag acggcaatgg cattgtttac aacatgttga aaaagactgt tgacatctat
      661 cccaatgccc agatttacgt gaccacggag aaacgcatga gttactgtga tggagtgttt
      721 aagaaggaaa ctgggaaaga cagtgaattt tgatgcctac cctgtgaagc aaggaaaggg
      781 gatctttctg tctcctgatt acagataagg aaaaggagg
//
LOCUS       XM_032606638            5698 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger SWIM-type containing 5
            (ZSWIM5), mRNA.
ACCESSION   XM_032606638
VERSION     XM_032606638.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5698
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5698
                     /gene="ZSWIM5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 6 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740750"
     CDS             212..3772
                     /gene="ZSWIM5"
                     /codon_start=1
                     /product="zinc finger SWIM domain-containing protein 5"
                     /protein_id="XP_032462529.1"
                     /db_xref="GeneID:116740750"
                     /translation="MAEGGEREELLSPPPVSPAKRLCSWPSPQAHHPRGSPGAAGGGV
                     GGVGGSCLPLGARPHLQPESLLDCAAKTVAEKWAYERVEERFERIPEPVQRRIVYWSF
                     PRNEREICMYSSFQYRGGPGAGSAGGAAGASPAEEGPPPPPGAAAPAGSAPGAGAAGA
                     SPGLGSGAGAAGGGGGEGLPFRRGIRLLDSGSVENVLQVGFHLSGTVTEPATTSEPAV
                     TYKVAISFDRCKITSVACGCGNKDIFYCAHVVALSLYRIRKPDQVKLRLPISETLFQM
                     NRDQLQKFIQYLITAHHTEVLPTAQKLADEILSSNSEINQVNGAPDPTAGASIDDENC
                     WHLDEEQVKEQVKLFLSQGGYYGSGKQLNSMFAKVREMLRMRDSNGARMLTLITEQFM
                     ADPRLTLWRQQGTTMTDKCRQLWDELGALWVCIILNPHCKLEEKCCWLQQLQKWNDLD
                     VCPLEDGNYGHELPNITNALPQNASHRSDSLSRPRRTVFTRAIEGRELHWQDSHLQRI
                     ISSDVYIAPACQQESERLLFNSQGQPLWLEHVPTACARVDALRSHGYPKEALRLTVAI
                     INTLRLQQQRQLEIYKHQKKELLQRGTTTITNLEGWVGHPLDPIGCLFLTLTEACRLN
                     DDGYLEVSDMNESRAPVYQHVPVAADCPDSSESYLSLAMEVALMGMGQQRVMPEGLYA
                     QDKVCRNEEQLLSRLQELQLDDELVQTLQKQCILLLEGGPFSGLGEVIHRESVPMHTF
                     AKYLFSALLPHDPDLSYKLALRAMRLPVLENSTSAGDTSHPHHMVSVVPSRYPRWFTL
                     GHLESQQCELASTMLTAAKGDTLRLRTILEAIQKHIHSSSLIFKLAQDAFKIATPTDS
                     STDSTLLNVALELGLQVMRMTLSTLNWRRREMVRWLVTCATEVGVQALVSILQSWYTL
                     FTPTEATSIVAATAVSHTTILRLSLDYPQREELASCARTLALQCAMKDPQSCALSALT
                     LCEKDHIAFEAAYQIAIDAAAGGMTHSQLFTIARYMELRGYPLRAFKLASLAMSHLNL
                     AYNQDTHPAINDVLWACALSHSLGKNELAALIPLVVKSVHCATVLSDILRRCTVTAPG
                     LAGIPGRRSSGKLMSTDKAPLRQLLDATINAYINTTHSRLTHISPRHYGEFIEFLSKA
                     RETFLLPQDGHLQFAQFIDNLKQIYKGKKKLMLLVRERFG"
     misc_feature    752..>1087
                     /gene="ZSWIM5"
                     /note="Uncharacterized protein, contains SWIM-type Zn
                     finger domain [Function unknown]; Region: SWIM; COG4715"
                     /db_xref="CDD:443750"
ORIGIN      
        1 agcgcgcacc ggaccggcct agactccaca ctcaggccgg cagcctcgcg ggtttgctcg
       61 ccccgcccct tccccccccc tcccccggcg ccgcagctgg gcgcttgcgc ggggcgcgtg
      121 gccgtggcca gggtctccgc agcagctggt gcagccgccg ctgctgccgc tgccgctgcc
      181 gccgcctcag tcagtcagtc agtccccagc aatggcggaa ggaggtgagc gagaggagct
      241 gctctcgcca ccgccggtct ctccggccaa gcgcctgtgc tcgtggccca gtccgcaggc
      301 tcaccaccct cgcggttcgc ccggggcggc cggcggcggg gtggggggcg tcggcggcag
      361 ctgcctgccc ctgggggccc gcccccacct gcagcccgag tccttgctgg actgtgccgc
      421 caagacggtt gcggaaaagt gggcgtacga gcgggtggag gaacgcttcg agcggatccc
      481 ggagcccgtg cagcgccgca tcgtctactg gtcctttccg cggaatgagc gggagatctg
      541 catgtactcc agcttccagt accgcggcgg ccctggcgcc ggctcggctg gtggcgccgc
      601 gggggcttcg ccggccgagg aggggccgcc gccacccccc ggggccgccg ctccggccgg
      661 ctccgccccc ggggccggcg cggcgggggc gtccccagga ctgggctcag gggcaggagc
      721 cgccggtggc ggtggtggcg aggggctacc gttccgccgg ggcatccgtc tgctggacag
      781 cggctccgtg gaaaatgtgc tgcaagtcgg cttccatctc agtggcacag taactgagcc
      841 ggccactact tctgaaccag cagtgactta taaagttgcc atcagttttg atcgatgcaa
      901 aatcacttca gtggcgtgtg gctgtgggaa caaagacata ttctactgtg cccatgtggt
      961 agcgctctca ctctacagga tccgtaaacc agaccaagtc aaactgcgtc ttcctatctc
     1021 agaaaccctt ttccagatga atagggacca gctacaaaag tttattcagt atttaatcac
     1081 ggcacaccac actgaagttc ttcctactgc acagaagctg gcagatgaga ttctatcctc
     1141 caactccgaa atcaaccaag taaacggtgc ccctgacccc acagctgggg ccagcattga
     1201 tgatgagaac tgttggcatt tggacgagga acaggtgaaa gaacaagtga agctctttct
     1261 ctcccagggt ggttactatg gctctggaaa gcaactcaat tcaatgtttg ccaaggttcg
     1321 agagatgctg cggatgagag attccaatgg agccaggatg ctgacgctaa taactgagca
     1381 gtttatggct gacccacgac tcacactctg gagacagcaa ggaacaacca tgacagataa
     1441 gtgcaggcag ctctgggatg agctaggggc gttatgggtg tgcatcattt taaatccaca
     1501 ttgcaaattg gaggaaaaat gctgttggct gcagcagctg cagaagtgga atgacctgga
     1561 tgtctgtccc ctggaggatg ggaactatgg gcatgagctg cccaacatca ccaacgcact
     1621 tccccagaat gccagtcacc gttcagattc tttatccaga ccaagacgga cagtgttcac
     1681 tagagccatc gagggccgtg aattgcattg gcaggacagc cacttacagc gaataatcag
     1741 cagtgatgta tatatagctc ctgcctgcca gcaggaaagt gagagactac tctttaattc
     1801 ccaaggccag ccactgtggc ttgagcatgt gcctacagcc tgtgctcggg ttgatgccct
     1861 gcgttcccat ggttacccaa aagaggccct cagactcaca gtggccatta tcaatactct
     1921 gaggttgcag cagcaacggc agctggaaat ctacaagcat cagaagaaag aactgttgca
     1981 gagaggaacc acaacgatca caaacctaga aggctgggtg ggccaccccc tggatcccat
     2041 tggctgcctg tttctcactt tgactgaggc ctgccgcctg aatgatgatg gctatctgga
     2101 agtgtcagat atgaatgaaa gcagagcccc tgtgtaccag catgtgcctg tggctgcaga
     2161 ctgcccagac agcagtgagt cctacctgtc attggctatg gaagttgctc tgatggggat
     2221 gggtcaacag agggtgatgc ctgaaggcct ctacgcacag gacaaggtgt gccgtaatga
     2281 ggagcagctc ctgagtcgac tccaggagct gcagctggat gatgagctag tgcaaacact
     2341 gcagaagcag tgcatcttac tcctggaagg aggccccttc agcggtctgg gagaagtcat
     2401 ccaccgagag agtgttccca tgcatacctt tgccaagtat ttgttctcag ctctactgcc
     2461 tcatgatcca gacctgtcgt ataaattagc cttacgtgcc atgaggttac ctgttctaga
     2521 aaactcaact tctgcaggcg acacttccca ccctcaccat atggtatctg tggtgcccag
     2581 ccgttaccct cgctggttca cgcttggaca cttggaatca cagcagtgtg aactggcctc
     2641 caccatgctg actgctgcca aaggagacac tctgaggctc cgcacaatcc tggaagcaat
     2701 acagaagcac atccattctt cctccctcat cttcaaactg gcccaagatg cattcaagat
     2761 tgctacaccc acggacagta gtacagacag caccctgctc aacgtggccc tggagctggg
     2821 gttacaggtg atgaggatga ccttatcaac ccttaactgg aggcgccggg agatggtgcg
     2881 gtggttggtg acatgtgcta cagaagtggg tgtgcaggcc ctggtgagca tcctgcagag
     2941 ctggtacaca ctcttcaccc ccaccgaggc taccagcatt gtggctgcca cagccgtatc
     3001 ccacaccact atcctgcgcc tcagtcttga ctacccacag cgggaggagc tggctagctg
     3061 tgctcgcacg ctggccctgc agtgtgctat gaaggatcca cagagctgcg ccctatcggc
     3121 cctcacactc tgtgagaagg accacatcgc ctttgaagca gcctaccaga ttgccattga
     3181 tgctgctgct ggcggcatga ctcactcaca gctgttcacc atcgcccgct acatggagct
     3241 ccgtggctac ccgctacgtg ccttcaagct ggcctcactg gccatgagcc atctcaacct
     3301 ggcctacaac caggacaccc acccggccat caatgatgtg ctctgggcgt gtgccctcag
     3361 ccactccctg ggcaagaatg agctggcggc cctgattccc ctggtggtga agagtgtgca
     3421 ctgtgccaca gtgctttcag acatcctgcg gcgctgcacg gtcactgcgc ctggcctggc
     3481 cggcatccca ggccgccgca gctcgggaaa gcttatgtcc accgacaaag ctcccctgcg
     3541 ccagctgctg gatgccacca tcaatgccta tatcaacacc acacactcgc gcctgacaca
     3601 catcagccct cgccactacg gagagttcat tgagtttctg agcaaggccc gggagacctt
     3661 cctgctgccg caggatggcc acctgcagtt tgcccagttc atcgacaacc tgaaacaaat
     3721 ctacaaaggc aagaagaagc tgatgctgct ggtgcgagag cgctttggct gagagagcag
     3781 atagcttgct gctggggcat cctgcactcc caggtatcat ccggtcaggc caaggacaca
     3841 aacatttgtc caccctgaga ggactctgag cacctgtggc tgaagccaga ggaccacagg
     3901 gctaagcatg gggagagtcc aactctagcc aacatgcctt gtcaaggttc tcacaacagc
     3961 ccactgttcc tggaggagct gggccctgca gaccgatcag aaaccccaca catgccacct
     4021 cacgccccgc tatcctgcgt gtcctgggca ttggccctct ctccttggca aacacagaac
     4081 actgttccgt ctcagggatt gcttaaccag agaaacagaa gcatttatgg tactgtaaat
     4141 actatagtat atgtgttgcc aattacattg taaaattgta actatttata attctggttc
     4201 taatctgatg ggtgggaaga taggcttgtt ttctgaggag attcacaacc gtttctcagg
     4261 tttcccttgc agaggatctg ctattggcag tggaagagtg ggggtggcag agagaaaaat
     4321 ggccattaga gtaaacccca agtctagtct atgcagaaac cccggcctgc agatgggcat
     4381 tgacagccca gtgatgggtg aggggcaggg cccggtcttg acttagactt tcacctcacg
     4441 aagccatgag gacacagaag ctcttgctcc tgcctcacac agcctctctc tctgggagcc
     4501 tgctgagctc ctgagaaaca aaggcaggga gaaggtgaag gtctgggagg ccactgggct
     4561 tataatgttc atcttctctg gtcacctttg tgttagacag catctggttt catctctaat
     4621 tacacttgtg tgtgtgtgga tctggatggc tacgtacgtg catctgtgcg catagataca
     4681 tctgtgcgtg cctgcatgtg cacatgtata tttatgtgta tctgtgtcag gtctgtgtct
     4741 gtgtaaagac atgtctgtgt actggatggt gggtttctgt gtgagggtat acacatttgt
     4801 gaacatataa aaatacatat ctgtgtgtgt gtgtgtgtgt gtgttgattg tcaatgcatg
     4861 tgtagtgttt gtgtatctgg gcacatgtaa gtgcatgtgt ataaacatgt ccgtgtctgt
     4921 gtgtaactgt gtatatttcc acatgtaggt ttgtctgtga attcatgttt gaggatctgc
     4981 ctgaatgtgt cccttctctt tttgccagat ctctcatccc catttctctt attctctcac
     5041 cagctaaaca tgttcatctc tgggcctcct ttattcacca ttgtctcacc aaacaagctt
     5101 ctaagcacta gtctccctct gccctgagtg gctccttcag tgccacattt ctcttcttac
     5161 cctgtacttg ctttcttccc ctgcctttct acctcaagct tcctctgcct gcttctgtca
     5221 cagtcccatt ggtcattggt ttggaggctg cggctggaat gcatttggcc ttttcctttc
     5281 tgactagttt ctagctctag tgggcaaccc ctgtcttagc cctggctgac ctccacagcg
     5341 tatcatgttc ctgctacctt actgacccct ctgctcagcc tggaattgta ataggaggta
     5401 gcacaggcat tcggaagagt catttagatg ccagtgtctt ggtggttact gttccatgtt
     5461 ttagttcccc agtagggggt ggggtgtgac agggaagggg tggtatagtt agagtgtgaa
     5521 ccaaggacct ctttgtctgc tttactttcc tgtctttgac aaactgtttg tgtcactttt
     5581 cttttctcca cactaaccag taagttgcat ttgctgtttg tggctaccaa agtctcaccg
     5641 tccagctacg ggcccaacaa cctctcagcc caataggttg gtttaaaaaa aaaaaaaa
//
LOCUS       XM_032606664            1749 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA methyltransferase 1 associated
            protein 1 (DMAP1), transcript variant X1, mRNA.
ACCESSION   XM_032606664
VERSION     XM_032606664.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1749
                     /gene="DMAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740761"
     CDS             289..1695
                     /gene="DMAP1"
                     /codon_start=1
                     /product="DNA methyltransferase 1-associated protein 1
                     isoform X1"
                     /protein_id="XP_032462555.1"
                     /db_xref="GeneID:116740761"
                     /translation="MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSET
                     LTFKRPEGMHREVYALLYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTN
                     PARKDGAMFFHWRRAAEEGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHL
                     FDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVF
                     DAGHERRRKEQLERLYNRTPEQVAEEEYLLQELRKIEARKKEREKRSQDLQKLITAAD
                     TTAEQRRTERKAPKKKLPQKKEAEKPAVPETAGIKFPDFKSAGVTLRSQRMKLPSSVG
                     QKKIKALEQMLLELGVELSPTPTEELVHMFNELRSDLVLLYELKQACANCEYELQMLR
                     HRHEALARAGVLGGPATPASGPAPAPAEPAVPEPGLGPDPSKDAIIDVVGAPLTPNSR
                     KRRESASSSSSVKKAKKP"
     misc_feature    658..897
                     /gene="DMAP1"
                     /note="SANT/Myb-like domain of DAMP1; Region:
                     SANT_DAMP1_like; pfam16282"
                     /db_xref="CDD:465084"
     misc_feature    1015..1494
                     /gene="DMAP1"
                     /note="DNA methyltransferase 1-associated protein 1
                     (DMAP1); Region: DMAP1; pfam05499"
                     /db_xref="CDD:398903"
ORIGIN      
        1 tttctaacgc gcacgaccgg aagtttctgt ttgcggcttt gcggggatag gggagtcgct
       61 gggccgcagc ccggacgtct aggtgcggag gcgctggggc ttaggaggca gctggggccg
      121 ttagggagac ccaggcggcg ggacagtggc ggggccccga cctgacccta agccactctc
      181 gtcctcgcgg cccgcctctt caccccgccc ccacttgggg ctgaagtggc tctgcccccc
      241 gatctgagcc tggtagctcc tcaggcgctc ccccatctct cgggcgcgat ggctacgggc
      301 gcggatgtgc gggacattct agaactcggg ggtccagagg gggatgcagc ctccgggacc
      361 atcagcaaga aggacattat caatccggac aagaaaaagt ccaagaagtc ctctgagaca
      421 ctgaccttca agaggcccga gggcatgcat cgggaggtct atgcactgct ctactctgac
      481 aagaaggatg cacccccact gctacccagt gacactggtc aaggctaccg cacagtgaag
      541 gccaagttgg gctccaagaa ggtacggccg tggaagtgga tgccattcac caacccagcc
      601 cgcaaggatg gagccatgtt cttccactgg cgacgggcag cagaggaggg caaggactac
      661 cccttcgcca ggttcaataa gacggtgcag gtgcccgtgt attcagagca ggagtaccag
      721 ctctatcttc atgacgacgc ttggacaaag gcagaaaccg accacctctt tgaccttagc
      781 cgccgctttg acctacgttt tgttgttatc cacgaccggt atgaccacca gcagttcaag
      841 aagcgttctg tggaggattt gaaggagcgc tactaccaca tctgtgccaa gcttgccaac
      901 gtgcgggccg tgccaggcac agacctcaag ataccagtgt ttgatgctgg gcacgagcga
      961 cggcggaagg aacagctgga gcgtctctat aaccggaccc cagagcaggt ggcggaggag
     1021 gagtacctgc tgcaggagct gcgcaagatc gaggcccgga agaaggagcg ggagaagcgc
     1081 agccaggacc tgcagaagct gataacagcg gcggacacca ctgccgagca gcggcgcacg
     1141 gaacgcaagg cccccaagaa gaagctcccc cagaaaaagg aggctgagaa gccggccgtt
     1201 cctgagactg caggcatcaa gttcccagac ttcaagtccg caggcgtcac gctgaggagt
     1261 cagcggatga agctgccaag ctctgtggga cagaagaaga tcaaggcctt ggaacagatg
     1321 ctgctggagc tgggtgtgga actgagcccg acgcccacgg aggagctggt gcacatgttc
     1381 aatgagctgc ggagtgacct ggtgctgctc tacgagctca agcaggcgtg cgccaactgc
     1441 gagtacgagc tgcagatgct gcggcaccgg cacgaggcgc tggcccgggc cggtgtgctg
     1501 gggggccccg ccacaccggc atcgggcccg gctccggccc cagcggagcc ggcggtgcct
     1561 gaacctggtc tcggcccgga ccccagcaag gacgccatca ttgatgtggt gggcgcaccc
     1621 ctcacaccca attcgaggaa gcgacgggaa tcggcctcca gctcctcttc tgtgaagaaa
     1681 gccaagaagc cgtgaggggc cacacggggt gtgggatggt gctgtgtaaa tagagctgct
     1741 gagttggac
//
LOCUS       XM_032606673            1647 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA methyltransferase 1 associated
            protein 1 (DMAP1), transcript variant X2, mRNA.
ACCESSION   XM_032606673
VERSION     XM_032606673.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1647
                     /gene="DMAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740761"
     CDS             343..1593
                     /gene="DMAP1"
                     /codon_start=1
                     /product="DNA methyltransferase 1-associated protein 1
                     isoform X2"
                     /protein_id="XP_032462564.1"
                     /db_xref="GeneID:116740761"
                     /translation="MHREVYALLYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWK
                     WMPFTNPARKDGAMFFHWRRAAEEGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTK
                     AETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAVPGTD
                     LKIPVFDAGHERRRKEQLERLYNRTPEQVAEEEYLLQELRKIEARKKEREKRSQDLQK
                     LITAADTTAEQRRTERKAPKKKLPQKKEAEKPAVPETAGIKFPDFKSAGVTLRSQRMK
                     LPSSVGQKKIKALEQMLLELGVELSPTPTEELVHMFNELRSDLVLLYELKQACANCEY
                     ELQMLRHRHEALARAGVLGGPATPASGPAPAPAEPAVPEPGLGPDPSKDAIIDVVGAP
                     LTPNSRKRRESASSSSSVKKAKKP"
     misc_feature    556..795
                     /gene="DMAP1"
                     /note="SANT/Myb-like domain of DAMP1; Region:
                     SANT_DAMP1_like; pfam16282"
                     /db_xref="CDD:465084"
     misc_feature    913..1392
                     /gene="DMAP1"
                     /note="DNA methyltransferase 1-associated protein 1
                     (DMAP1); Region: DMAP1; pfam05499"
                     /db_xref="CDD:398903"
ORIGIN      
        1 agtgaagtgg tgggtaggag tgacaacgga agacggctcg gggagagatg aggtgccaca
       61 cttcttgtga gatgggcggt aaaagatgtg aaataacggg atagagaata tgtgtcacct
      121 tggtgagatg ggatggagga ggtgggaccc cgtggaaaat ggtggggacc aagagggtgt
      181 gacatttgta agacaggacc tagagagtgt gacacttgtg ggatattggg gggacatcga
      241 ctcggtgtga catgctgaga gatgctggaa aagtatcttc tgctctgaca gaaaaagtcc
      301 aagaagtcct ctgagacact gaccttcaag aggcccgagg gcatgcatcg ggaggtctat
      361 gcactgctct actctgacaa gaaggatgca cccccactgc tacccagtga cactggtcaa
      421 ggctaccgca cagtgaaggc caagttgggc tccaagaagg tacggccgtg gaagtggatg
      481 ccattcacca acccagcccg caaggatgga gccatgttct tccactggcg acgggcagca
      541 gaggagggca aggactaccc cttcgccagg ttcaataaga cggtgcaggt gcccgtgtat
      601 tcagagcagg agtaccagct ctatcttcat gacgacgctt ggacaaaggc agaaaccgac
      661 cacctctttg accttagccg ccgctttgac ctacgttttg ttgttatcca cgaccggtat
      721 gaccaccagc agttcaagaa gcgttctgtg gaggatttga aggagcgcta ctaccacatc
      781 tgtgccaagc ttgccaacgt gcgggccgtg ccaggcacag acctcaagat accagtgttt
      841 gatgctgggc acgagcgacg gcggaaggaa cagctggagc gtctctataa ccggacccca
      901 gagcaggtgg cggaggagga gtacctgctg caggagctgc gcaagatcga ggcccggaag
      961 aaggagcggg agaagcgcag ccaggacctg cagaagctga taacagcggc ggacaccact
     1021 gccgagcagc ggcgcacgga acgcaaggcc cccaagaaga agctccccca gaaaaaggag
     1081 gctgagaagc cggccgttcc tgagactgca ggcatcaagt tcccagactt caagtccgca
     1141 ggcgtcacgc tgaggagtca gcggatgaag ctgccaagct ctgtgggaca gaagaagatc
     1201 aaggccttgg aacagatgct gctggagctg ggtgtggaac tgagcccgac gcccacggag
     1261 gagctggtgc acatgttcaa tgagctgcgg agtgacctgg tgctgctcta cgagctcaag
     1321 caggcgtgcg ccaactgcga gtacgagctg cagatgctgc ggcaccggca cgaggcgctg
     1381 gcccgggccg gtgtgctggg gggccccgcc acaccggcat cgggcccggc tccggcccca
     1441 gcggagccgg cggtgcctga acctggtctc ggcccggacc ccagcaagga cgccatcatt
     1501 gatgtggtgg gcgcacccct cacacccaat tcgaggaagc gacgggaatc ggcctccagc
     1561 tcctcttctg tgaagaaagc caagaagccg tgaggggcca cacggggtgt gggatggtgc
     1621 tgtgtaaata gagctgctga gttggac
//
LOCUS       XM_032606681            1396 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA methyltransferase 1 associated
            protein 1 (DMAP1), transcript variant X3, mRNA.
ACCESSION   XM_032606681
VERSION     XM_032606681.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1396
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1396
                     /gene="DMAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740761"
     CDS             92..1342
                     /gene="DMAP1"
                     /codon_start=1
                     /product="DNA methyltransferase 1-associated protein 1
                     isoform X2"
                     /protein_id="XP_032462572.1"
                     /db_xref="GeneID:116740761"
                     /translation="MHREVYALLYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWK
                     WMPFTNPARKDGAMFFHWRRAAEEGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTK
                     AETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAVPGTD
                     LKIPVFDAGHERRRKEQLERLYNRTPEQVAEEEYLLQELRKIEARKKEREKRSQDLQK
                     LITAADTTAEQRRTERKAPKKKLPQKKEAEKPAVPETAGIKFPDFKSAGVTLRSQRMK
                     LPSSVGQKKIKALEQMLLELGVELSPTPTEELVHMFNELRSDLVLLYELKQACANCEY
                     ELQMLRHRHEALARAGVLGGPATPASGPAPAPAEPAVPEPGLGPDPSKDAIIDVVGAP
                     LTPNSRKRRESASSSSSVKKAKKP"
     misc_feature    305..544
                     /gene="DMAP1"
                     /note="SANT/Myb-like domain of DAMP1; Region:
                     SANT_DAMP1_like; pfam16282"
                     /db_xref="CDD:465084"
     misc_feature    662..1141
                     /gene="DMAP1"
                     /note="DNA methyltransferase 1-associated protein 1
                     (DMAP1); Region: DMAP1; pfam05499"
                     /db_xref="CDD:398903"
ORIGIN      
        1 ggggataggg gagtcgctgg gccgcagccc ggacgtctag aaaaagtcca agaagtcctc
       61 tgagacactg accttcaaga ggcccgaggg catgcatcgg gaggtctatg cactgctcta
      121 ctctgacaag aaggatgcac ccccactgct acccagtgac actggtcaag gctaccgcac
      181 agtgaaggcc aagttgggct ccaagaaggt acggccgtgg aagtggatgc cattcaccaa
      241 cccagcccgc aaggatggag ccatgttctt ccactggcga cgggcagcag aggagggcaa
      301 ggactacccc ttcgccaggt tcaataagac ggtgcaggtg cccgtgtatt cagagcagga
      361 gtaccagctc tatcttcatg acgacgcttg gacaaaggca gaaaccgacc acctctttga
      421 ccttagccgc cgctttgacc tacgttttgt tgttatccac gaccggtatg accaccagca
      481 gttcaagaag cgttctgtgg aggatttgaa ggagcgctac taccacatct gtgccaagct
      541 tgccaacgtg cgggccgtgc caggcacaga cctcaagata ccagtgtttg atgctgggca
      601 cgagcgacgg cggaaggaac agctggagcg tctctataac cggaccccag agcaggtggc
      661 ggaggaggag tacctgctgc aggagctgcg caagatcgag gcccggaaga aggagcggga
      721 gaagcgcagc caggacctgc agaagctgat aacagcggcg gacaccactg ccgagcagcg
      781 gcgcacggaa cgcaaggccc ccaagaagaa gctcccccag aaaaaggagg ctgagaagcc
      841 ggccgttcct gagactgcag gcatcaagtt cccagacttc aagtccgcag gcgtcacgct
      901 gaggagtcag cggatgaagc tgccaagctc tgtgggacag aagaagatca aggccttgga
      961 acagatgctg ctggagctgg gtgtggaact gagcccgacg cccacggagg agctggtgca
     1021 catgttcaat gagctgcgga gtgacctggt gctgctctac gagctcaagc aggcgtgcgc
     1081 caactgcgag tacgagctgc agatgctgcg gcaccggcac gaggcgctgg cccgggccgg
     1141 tgtgctgggg ggccccgcca caccggcatc gggcccggct ccggccccag cggagccggc
     1201 ggtgcctgaa cctggtctcg gcccggaccc cagcaaggac gccatcattg atgtggtggg
     1261 cgcacccctc acacccaatt cgaggaagcg acgggaatcg gcctccagct cctcttctgt
     1321 gaagaaagcc aagaagccgt gaggggccac acggggtgtg ggatggtgct gtgtaaatag
     1381 agctgctgag ttggac
//
LOCUS       XM_032606688            1756 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA methyltransferase 1 associated
            protein 1 (DMAP1), transcript variant X4, mRNA.
ACCESSION   XM_032606688
VERSION     XM_032606688.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1756
                     /gene="DMAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 2
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740761"
     CDS             464..1702
                     /gene="DMAP1"
                     /codon_start=1
                     /product="DNA methyltransferase 1-associated protein 1
                     isoform X3"
                     /protein_id="XP_032462579.1"
                     /db_xref="GeneID:116740761"
                     /translation="MHCSTLTRSKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPF
                     TNPARKDGAMFFHWRRAAEEGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETD
                     HLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP
                     VFDAGHERRRKEQLERLYNRTPEQVAEEEYLLQELRKIEARKKEREKRSQDLQKLITA
                     ADTTAEQRRTERKAPKKKLPQKKEAEKPAVPETAGIKFPDFKSAGVTLRSQRMKLPSS
                     VGQKKIKALEQMLLELGVELSPTPTEELVHMFNELRSDLVLLYELKQACANCEYELQM
                     LRHRHEALARAGVLGGPATPASGPAPAPAEPAVPEPGLGPDPSKDAIIDVVGAPLTPN
                     SRKRRESASSSSSVKKAKKP"
     misc_feature    665..904
                     /gene="DMAP1"
                     /note="SANT/Myb-like domain of DAMP1; Region:
                     SANT_DAMP1_like; pfam16282"
                     /db_xref="CDD:465084"
     misc_feature    1022..1501
                     /gene="DMAP1"
                     /note="DNA methyltransferase 1-associated protein 1
                     (DMAP1); Region: DMAP1; pfam05499"
                     /db_xref="CDD:398903"
ORIGIN      
        1 acatttctaa cgcgcacgac cggaagtttc tgtttgcggc tttgcgggga taggggagtc
       61 gctgggccgc agcccggacg tctaggtgcg gaggcgctgg ggcttaggag gcagctgggg
      121 ccgttaggga gacccaggcg gcgggacagt ggcggggccc cgacctgacc ctaagccact
      181 ctcgtcctcg cggcccgcct cttcaccccg cccccacttg gggctgaagt ggctctgccc
      241 cccgatctga gcctggtagc tcctcaggcg ctcccccatc tctcgggcgc gatggctacg
      301 ggcgcggatg tgcgggacat tctagaactc gggggtccag agggggatgc agcctccggg
      361 accatcagca agaaggacat tatcaatccg gacaagaaaa agtccaagaa gtcctctgag
      421 acactgacct tcaagaggcc cgagggcatg catcgggagg tctatgcact gctctactct
      481 gacaagaagc aaggatgcac ccccactgct acccagtgac actggtcaag gctaccgcac
      541 agtgaaggcc aagttgggct ccaagaaggt acggccgtgg aagtggatgc cattcaccaa
      601 cccagcccgc aaggatggag ccatgttctt ccactggcga cgggcagcag aggagggcaa
      661 ggactacccc ttcgccaggt tcaataagac ggtgcaggtg cccgtgtatt cagagcagga
      721 gtaccagctc tatcttcatg acgacgcttg gacaaaggca gaaaccgacc acctctttga
      781 ccttagccgc cgctttgacc tacgttttgt tgttatccac gaccggtatg accaccagca
      841 gttcaagaag cgttctgtgg aggatttgaa ggagcgctac taccacatct gtgccaagct
      901 tgccaacgtg cgggccgtgc caggcacaga cctcaagata ccagtgtttg atgctgggca
      961 cgagcgacgg cggaaggaac agctggagcg tctctataac cggaccccag agcaggtggc
     1021 ggaggaggag tacctgctgc aggagctgcg caagatcgag gcccggaaga aggagcggga
     1081 gaagcgcagc caggacctgc agaagctgat aacagcggcg gacaccactg ccgagcagcg
     1141 gcgcacggaa cgcaaggccc ccaagaagaa gctcccccag aaaaaggagg ctgagaagcc
     1201 ggccgttcct gagactgcag gcatcaagtt cccagacttc aagtccgcag gcgtcacgct
     1261 gaggagtcag cggatgaagc tgccaagctc tgtgggacag aagaagatca aggccttgga
     1321 acagatgctg ctggagctgg gtgtggaact gagcccgacg cccacggagg agctggtgca
     1381 catgttcaat gagctgcgga gtgacctggt gctgctctac gagctcaagc aggcgtgcgc
     1441 caactgcgag tacgagctgc agatgctgcg gcaccggcac gaggcgctgg cccgggccgg
     1501 tgtgctgggg ggccccgcca caccggcatc gggcccggct ccggccccag cggagccggc
     1561 ggtgcctgaa cctggtctcg gcccggaccc cagcaaggac gccatcattg atgtggtggg
     1621 cgcacccctc acacccaatt cgaggaagcg acgggaatcg gcctccagct cctcttctgt
     1681 gaagaaagcc aagaagccgt gaggggccac acggggtgtg ggatggtgct gtgtaaatag
     1741 agctgctgag ttggac
//
LOCUS       XM_032606698            1405 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA methyltransferase 1 associated
            protein 1 (DMAP1), transcript variant X5, mRNA.
ACCESSION   XM_032606698
VERSION     XM_032606698.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1405
                     /gene="DMAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 1
                     Protein, and 97% coverage of the annotated genomic feature
                     by RNAseq alignments, including 6 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116740761"
     CDS             113..1351
                     /gene="DMAP1"
                     /codon_start=1
                     /product="DNA methyltransferase 1-associated protein 1
                     isoform X3"
                     /protein_id="XP_032462589.1"
                     /db_xref="GeneID:116740761"
                     /translation="MHCSTLTRSKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPF
                     TNPARKDGAMFFHWRRAAEEGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETD
                     HLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP
                     VFDAGHERRRKEQLERLYNRTPEQVAEEEYLLQELRKIEARKKEREKRSQDLQKLITA
                     ADTTAEQRRTERKAPKKKLPQKKEAEKPAVPETAGIKFPDFKSAGVTLRSQRMKLPSS
                     VGQKKIKALEQMLLELGVELSPTPTEELVHMFNELRSDLVLLYELKQACANCEYELQM
                     LRHRHEALARAGVLGGPATPASGPAPAPAEPAVPEPGLGPDPSKDAIIDVVGAPLTPN
                     SRKRRESASSSSSVKKAKKP"
     misc_feature    314..553
                     /gene="DMAP1"
                     /note="SANT/Myb-like domain of DAMP1; Region:
                     SANT_DAMP1_like; pfam16282"
                     /db_xref="CDD:465084"
     misc_feature    671..1150
                     /gene="DMAP1"
                     /note="DNA methyltransferase 1-associated protein 1
                     (DMAP1); Region: DMAP1; pfam05499"
                     /db_xref="CDD:398903"
ORIGIN      
        1 tttgcgggga taggggagtc gctgggccgc agcccggacg tctagaaaaa gtccaagaag
       61 tcctctgaga cactgacctt caagaggccc gagggcatgc atcgggaggt ctatgcactg
      121 ctctactctg acaagaagca aggatgcacc cccactgcta cccagtgaca ctggtcaagg
      181 ctaccgcaca gtgaaggcca agttgggctc caagaaggta cggccgtgga agtggatgcc
      241 attcaccaac ccagcccgca aggatggagc catgttcttc cactggcgac gggcagcaga
      301 ggagggcaag gactacccct tcgccaggtt caataagacg gtgcaggtgc ccgtgtattc
      361 agagcaggag taccagctct atcttcatga cgacgcttgg acaaaggcag aaaccgacca
      421 cctctttgac cttagccgcc gctttgacct acgttttgtt gttatccacg accggtatga
      481 ccaccagcag ttcaagaagc gttctgtgga ggatttgaag gagcgctact accacatctg
      541 tgccaagctt gccaacgtgc gggccgtgcc aggcacagac ctcaagatac cagtgtttga
      601 tgctgggcac gagcgacggc ggaaggaaca gctggagcgt ctctataacc ggaccccaga
      661 gcaggtggcg gaggaggagt acctgctgca ggagctgcgc aagatcgagg cccggaagaa
      721 ggagcgggag aagcgcagcc aggacctgca gaagctgata acagcggcgg acaccactgc
      781 cgagcagcgg cgcacggaac gcaaggcccc caagaagaag ctcccccaga aaaaggaggc
      841 tgagaagccg gccgttcctg agactgcagg catcaagttc ccagacttca agtccgcagg
      901 cgtcacgctg aggagtcagc ggatgaagct gccaagctct gtgggacaga agaagatcaa
      961 ggccttggaa cagatgctgc tggagctggg tgtggaactg agcccgacgc ccacggagga
     1021 gctggtgcac atgttcaatg agctgcggag tgacctggtg ctgctctacg agctcaagca
     1081 ggcgtgcgcc aactgcgagt acgagctgca gatgctgcgg caccggcacg aggcgctggc
     1141 ccgggccggt gtgctggggg gccccgccac accggcatcg ggcccggctc cggccccagc
     1201 ggagccggcg gtgcctgaac ctggtctcgg cccggacccc agcaaggacg ccatcattga
     1261 tgtggtgggc gcacccctca cacccaattc gaggaagcga cgggaatcgg cctccagctc
     1321 ctcttctgtg aagaaagcca agaagccgtg aggggccaca cggggtgtgg gatggtgctg
     1381 tgtaaataga gctgctgagt tggac
//
LOCUS       XM_032606710            1644 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin enhancer binding factor 2
            (ILF2), mRNA.
ACCESSION   XM_032606710
VERSION     XM_032606710.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1644
                     /gene="ILF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 6 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740783"
     CDS             100..1272
                     /gene="ILF2"
                     /codon_start=1
                     /product="interleukin enhancer-binding factor 2"
                     /protein_id="XP_032462601.1"
                     /db_xref="GeneID:116740783"
                     /translation="MRGDRGRGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRV
                     KPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEV
                     RQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTN
                     ETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQS
                     TVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILA
                     AGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEG
                     DASYLASEISTWDGVIVTPSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE"
     misc_feature    391..1113
                     /gene="ILF2"
                     /note="domain in DSRM or ZnF_C2H2 domain containing
                     proteins; Region: DZF; smart00572"
                     /db_xref="CDD:128842"
ORIGIN      
        1 gtttgttggg acacgccggc aggccgcctc tccagttgtc tgctcctcgg aggaaagggg
       61 cggttggtgt ggcctccatt gttcgggctc taggacgcca tgaggggtga cagaggccgc
      121 ggtcgcggcg ggcgctttgg ttccagagga ggccccggag gagggttcag gccctttgtg
      181 ccacatatcc catttgattt ctatttgtgt gaaatggcct ttccccgggt caagccagcg
      241 cctgatgaaa cttccttcag tgaggccttg ctgaagagga atcaggacct tgctcctaac
      301 tctgctgaac aggcctctat cctttctctg gtgacaaaaa ttaacaatgt gattgacaat
      361 ttgattgtgg ctccagggac atttgaagtg caaattgaag aagtccgaca agtcggatcg
      421 tataaaaagg gaacgatgac tacaggacac aatgtggctg acctggtggt gatcctgaag
      481 attttgccaa cattggaagc cgttgctgca ctagggaaca aggtcgtgga gagcctaagg
      541 gcacaggatc cttctgaagt tttgaccatg ctgaccaatg aaactggctt tgaaatcagt
      601 tcttctgatg ctacagtgaa gattctcatt acaacagtgc cacccaatct ccgaaaactg
      661 gacccagaac tccacttgga tatcaaggtg ttgcagagtg ccttagcagc catccgacat
      721 gcccgctggt ttgaggaaaa tgcttctcag tccacagtta aagttctcat caggctgctg
      781 aaggacctga ggattcgttt ccctggcttt gagcccctca ctccctggat acttgaccta
      841 cttgggcact atgctgtgat gaacaacccc accagacagc ctttggccct aaatgtggcc
      901 tacagacgat gcttgcagat tctggctgca ggactcttcc tgccagggtc ggtgggtatc
      961 actgacccct gtgagagtgg caacttcaga gtacacacag tcatgactct ggaacagcag
     1021 gatatggtct gctacacagc tcagactctg gtccgaatcc tctcacatgg tggctttagg
     1081 aagatccttg gccaggaggg tgatgccagc tatcttgctt ctgaaatatc tacctgggat
     1141 ggagtgatag tgacaccttc agaaaaggct tatgagaagc caccagagaa gaaggaagga
     1201 gaggaagagg aggagaatac agaagagcca cctcaaggag aggaagagga aagcatggag
     1261 actcaggaat gacctccctg tctcttcacc ccctttctta cccaaggaga agactggagc
     1321 ctaagctaac tgctgctggg ctttatgtgg tggcatttct gagggatagg ggagacagga
     1381 aggaagatta agaggacact atagaaggaa ttgtcattcc actgcattct gaaactggct
     1441 tagtagccag aagtctccca tttatgacct atgccatcca tctatagtga agcagggtac
     1501 caacttttat tcctaatact ctagaatcca gagcttctgg aaacctctct caaccagtac
     1561 tttgttgttg aaatgttgtg aactgttagt gtttgcaatt ttttttttac taagaaaaaa
     1621 gattaaagta cttcctggta gggc
//
LOCUS       XM_032606723             970 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SNAP associated protein (SNAPIN), mRNA.
ACCESSION   XM_032606723
VERSION     XM_032606723.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..970
                     /gene="SNAPIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740791"
     CDS             54..464
                     /gene="SNAPIN"
                     /codon_start=1
                     /product="SNARE-associated protein Snapin"
                     /protein_id="XP_032462614.1"
                     /db_xref="GeneID:116740791"
                     /translation="MSGAGSAAVSGAGTPVAGPAGRDLFAEGLLEFLRPAVQQLDSHV
                     HAVRESQVELREQIDNLATELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNA
                     QERLRRLNHSVAKETARRRAMLDSGVYPPGSPSK"
     misc_feature    120..383
                     /gene="SNAPIN"
                     /note="Snapin/Pallidin; Region: Snapin_Pallidin;
                     pfam14712"
                     /db_xref="CDD:464275"
ORIGIN      
        1 tttcagttcc cggcggccct cgcggcaggt tccggccgta agggcagttc gtgatgtcgg
       61 gagctggttc cgccgctgtg tccggggcag gaacccccgt ggcggggccc gcaggccgtg
      121 acctcttcgc cgaggggctc ctcgagttcc tgcgaccggc tgtgcagcag cttgactctc
      181 acgtccacgc cgtcagagag agccaagtag agctccggga acaaattgac aacctagcta
      241 ccgaactgtg ccgtatcaat gaggatcaga aagtggccct ggatctcgac ccctatgtga
      301 agaagctcct taatgcccgg cgacgagtcg tcttggttaa taacatccta cagaatgccc
      361 aggaacggct gaggcggcta aaccacagtg ttgccaagga aacagcccga aggagggcaa
      421 tgctggattc aggagtttac ccccctggtt ccccaagcaa gtaacaggcc agaagatggg
      481 cccatggcca cagaatagca caaataccat tccccggctg cctgtttcct ccaggactcc
      541 ctgtaggtgt tgggacatca aaagggcagc cctgtggttt gtttgaagca cttcagtctt
      601 acccatttat gtggggccca aagaaacctg tgtagagcag gactcaggat cccaaaggat
      661 ttattatggc tcttgcttcc aagaatgagc tgaggcctct acattttttt tttttaagct
      721 ccatactcaa ggcccacctc ctctaccatc tcctggcctc attaacaagg gaggggcttc
      781 ctctgtgcga ggttgttgga cctgggcaga atgtcctcta cctgtgactt ccaatattcc
      841 tttgtttaca gtacaaaggg caggcaaagt caaggtgaat gaccacctac cctcttttgt
      901 tgactgcact ggcttgacca ctgtagcagt gttactaaaa ccatttaatt caataaatgc
      961 ttaaatggta
//
LOCUS       XM_032606737            7867 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulin tyrosine ligase like 7 (TTLL7),
            transcript variant X1, mRNA.
ACCESSION   XM_032606737
VERSION     XM_032606737.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7867
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7867
                     /gene="TTLL7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     49% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740797"
     CDS             303..3062
                     /gene="TTLL7"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL7 isoform X1"
                     /protein_id="XP_032462628.1"
                     /db_xref="GeneID:116740797"
                     /translation="MPSLPQERVIQGPSPLDLNTELPYQSTMKRKVRKKKKKGTITAN
                     VAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKIAELQNYQRINHFPGMG
                     EICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVK
                     PANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKI
                     FLYHDGLVRMGTEKYIPPNETNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIRW
                     FTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLG
                     FDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRRNLAKQ
                     KAEAQRRLYGQNSIKRLLPGSSDSEQQRHQLERRKEELKERLAQVRKQISKEEHENRH
                     MGNYRRIYPPEDKTLLEKYENLLAVAFQTFLSGRAASFQREMNNPLKRMKEEDILDLL
                     EQCEIDDEKLMGKTAKSRGPKPLSSMPESTEITKRQKYYSSDSSYGSSSSSSESEENE
                     KEEYQNKKREKQVTYNLKQSNHYRLIQPSSSIRRSVSCPRSISSQSPSSADNRPFSAQ
                     QVISSSRSASGSRSHSLNRASSYMGHPPQRNVSSSTNSLMSESLRQLRPKEQEDDLTS
                     QTLFVLKDMKIRFPGKSDAESLLLIEDMIGNWKYHKTKVASYWLIKLDSVKQRKVLDI
                     VKTSVRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSHGQGLWNCFCDSGSSWESIFS
                     KSPEVVTPLQLQCCQRLVELCKQCLLVVYKYATDSRGSLSGIGTNWGNSRYLLPGSTQ
                     FFMRTPTYNLKYSSPGMARSNVLFTSRKWRNGPKAEGELRGANWPALIHKLDNWQPKV
                     FHLKF"
     misc_feature    573..1430
                     /gene="TTLL7"
                     /note="Tubulin-tyrosine ligase family; Region: TTL;
                     pfam03133"
                     /db_xref="CDD:397308"
     misc_feature    1440..1643
                     /gene="TTLL7"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cl21462"
                     /db_xref="CDD:473870"
     misc_feature    1452..1643
                     /gene="TTLL7"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269866"
     misc_feature    order(1461..1466,1491..1499,1503..1514,1515..1517,
                     1521..1529)
                     /gene="TTLL7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269866"
     misc_feature    order(1524..1526,1557..1562,1569..1574,1578..1583,
                     1590..1595,1599..1604,1611..1616,1620..1625,1632..1637,
                     1641..1643)
                     /gene="TTLL7"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269866"
ORIGIN      
        1 gccgatattc agcgcgggct gccgggcccg gggcagctgc ggtgggaagc cgaggtgcgc
       61 gggagccgtg gagggaccgt ccgcagcccg gaggcgagga cccgggctgg gatttcctta
      121 ccccggtccc ttcttatctc ataatgtcaa tgtcctgaaa tctgaggatt ccaccaagat
      181 aatatgatag gaactttcag tgatttggag ccgtatccta cttagactaa tgcaggcctt
      241 ccaggtttcc taagagcttg tacagcagcg cacactgctg ttgttaatcg gcacaggcaa
      301 gaatgccatc tttgcctcaa gaaagagtta ttcagggacc ctctcccctg gatctgaata
      361 cagaattgcc ttatcagagc acgatgaaaa ggaaagtcag aaagaagaaa aagaagggaa
      421 ccattacagc aaatgttgct gggacaaagt ttgaaattgt tcgtttagta atagatgaaa
      481 tgggatttat gaaaacgcca gatgaggatg aaacaagtaa ccttatatgg tgtgattcag
      541 ctgttcagca ggagaagatt gcagagctgc aaaattacca gaggatcaac cattttccag
      601 gaatggggga gatctgtagg aaggatttcc tagcaagaaa tatgaccaaa atgatcaagt
      661 cccggcctct ggattatacc tttgttcctc gaacatggat cttccctgct gagtatacac
      721 aatttcagaa ttatatgaaa gaattaaaga aaaaaagaaa gcagaagact tttatagtaa
      781 aaccagctaa tggtgcaatg ggtcatggga tttctttgat aagaaatggt gacaaacttc
      841 catctcagga tcatttgatt gttcaagaat acattgaaaa acctttccta atggaaggtt
      901 acaagtttga tttacgaatt tatattctgg taacatcgtg tgatccacta aaaatatttc
      961 tctaccacga tggacttgtg cgaatgggaa cagagaagta cattccacct aatgagacca
     1021 atttgaccca gttatacatg catctgacaa actactctgt gaacaagcac aatgagcatt
     1081 ttgaaaggga tgaaactgaa aacaaaggca gcaaacgttc catcagatgg tttacagaat
     1141 ttctacaagc aaatcaacat gatgttgcta agttttggag tgatatttca gaattggtgg
     1201 taaagactct gattgtagca gaacctcatg tcctgcatgc atatcgaatg tgcagacctg
     1261 gtcaacctcc aggaagtgaa agtgtctgct tcgaagtcct gggatttgat attttgttgg
     1321 atagaaaact aaagccatgg cttctagaga tcaatcgagc tccaagcttt ggaactgatc
     1381 agaaaataga ctatgatgta aaaaggggag tgctgctaaa tgcactgaag ctactaaata
     1441 tcaggaccag tgataaaagg agaaacttgg ctaaacaaaa agctgaggct caaaggagac
     1501 tttatggtca aaattcaatc aaaaggcttt taccgggttc ctcagactca gaacagcaaa
     1561 gacatcagtt ggagaggcgg aaagaagagt tgaaggagag acttgctcag gtacggaagc
     1621 agatctcgaa agaagaacat gaaaatcgac acatggggaa ttacaggcga atttatcctc
     1681 ctgaagataa aacactactt gaaaagtatg aaaatttgtt ggctgttgcc tttcagacct
     1741 tcctttcagg aagagcagct tcattccagc gagagatgaa taatcctttg aaaaggatga
     1801 aggaggaaga tattttggat cttctggagc aatgtgaaat tgatgacgaa aagttgatgg
     1861 gcaaaactgc caagtctcga ggaccaaagc ctctgtcttc catgcccgag agtaccgaga
     1921 taacaaaaag acagaagtac tacagcagtg acagcagcta tggtagtagc agcagctctt
     1981 cagaatcaga agaaaatgaa aaagaagagt accaaaataa gaaaagagaa aagcaagtta
     2041 catataatct taaacagtcc aaccactaca gattaatcca accatccagc tccataaggc
     2101 gttcagtcag ttgccctcgg tccatctctt ctcaatcacc atccagtgca gacaaccgcc
     2161 ccttttctgc tcaacaagtg atatcatcat cccggtcagc ttcagggtct cggtcacatt
     2221 ctttaaaccg tgcttcctcc tacatggggc atccgcctca aagaaatgtt tccagctcta
     2281 ccaactctct gatgagtgag tctttgcggc aactgagacc aaaagaacaa gaagatgatc
     2341 taacaagtca gaccttattt gttctcaagg acatgaagat ccggtttcca ggaaaatcag
     2401 atgcagaatc attacttctg atagaagata tgattggtaa ctggaagtat cataaaacaa
     2461 aagtggcttc atattggctc ataaaattgg actctgtaaa acaacgaaaa gttttggaca
     2521 tagtaaaaac aagtgtccgt acagttcttc cacgcatctg gaaggtacct gatgttgagg
     2581 aagtaaattt atatcggatt ttcaaccgag tttttaatcg cttactctgg agtcatggac
     2641 aaggactgtg gaactgtttc tgtgattcag gatcctcttg ggagagtatt ttcagtaaaa
     2701 gcccggaggt ggtgactcct ttgcagctcc aatgttgcca gcgcctggtc gagctttgta
     2761 aacagtgcct gctagtggtt tacaaatatg caactgactc aagaggatca ctctcaggca
     2821 ttggtaccaa ttggggtaat tccaggtatt tactaccagg aagtacacaa ttcttcatga
     2881 gaacaccaac ctacaacttg aaatacagtt cacctggaat ggctcgctcc aatgttttgt
     2941 ttacatcccg taaatggaga aatggtccca aagcagaagg agaattgaga ggggcaaact
     3001 ggcctgcttt aattcacaag ctggataact ggcaacccaa agttttccat ttgaagtttt
     3061 gacctttgca tggacaaatt caagaaaaga gaaatcctgc cttttaaaca ttggtttatg
     3121 gtggtgtatt tttgcttcag caacaataaa acttataaga tgtgttattg gatcaagttc
     3181 agtttttctg ctgagatttt taagaacaag gttgaacttt caatgtctaa aaagcattaa
     3241 ttgtctggat ccatatgaac caagataatg accacaaata acagtcgtgc gaccaaaaat
     3301 tgttaaatta agactaattg cacactttga gattcttgcc cttttttggt gcttttttgc
     3361 cttgttatgg gtattgaagg aaaactattc aggtgaaaca ttctgcatta actgggctgt
     3421 attacctaaa aagagctaca taaagttttt attttatccc cacctgctaa tttgaaaact
     3481 attggtaaag tcatcattca gtacactaat attttctaaa ttagtaagaa gtcttacctt
     3541 acaaaaataa tcagataatg ctgatatttc tctttcaaag gctaacaatg acagttcctg
     3601 gtcctgagct ggttggttca tacaataact aatgtacatg ttactacatt gaatattgat
     3661 agatttgctg aagattctgg gtttgagggt tagcttgaaa gcaatacatt tgctaccatg
     3721 aatcatgact caaattatcc ccgtgtgttt tactacctgt atatgaatgc aaatgttgtt
     3781 acagaaaata tgcttgaaat gtcaacacaa tgtgcaatta gtattgcatt gtcatgcttc
     3841 agcatgtgat atctgtatgg tgaagttatt tcaattactc agatatgtta ctataataaa
     3901 aaatgtttaa tataagaaag ctacatatgt catcaaatgg ttatttctgt actccccctc
     3961 ccccccacac actgttttta gtagtagaag agactggctc tcaattaagc tttcagcgtg
     4021 atgaaatata ttttcacagt aattttcttc tgctgtagag tcagcagtag aactgtgggg
     4081 ataactttac ctgctattaa agtcaggttg agtaaacaga gttggtgtca attcctctct
     4141 tagttagctg gaaggtagac tggtctaaaa tttagaaatg acatttttat atctttctag
     4201 catcattata acaatagtat tactaatctg aatagaaatg tgtcagcatc tcagctatga
     4261 catttttttc aggaatttat aattttatca ctattaaaat atactaaacc tcaataagta
     4321 gcatatcata gtcttattgc cactattacc attgtctata agatgattgt atataaagaa
     4381 attgaatatt tttcctttaa agaaaggaag ctctttggat aaaaatctat catgatagga
     4441 actttaatgc atgtatacct cagcaacaag tgatatggat attgactttt taaatgtatt
     4501 tttaaagatt tgttatttta taaagtaaaa atattctata aaatctttaa actttgaatt
     4561 tttttcagtg acagataaag atgagaccaa tgtgggtagt ttagtatctc cctattatat
     4621 caaataattt gtaagataaa tatacatata gtaaatgatt gaaaatcttt taaaactata
     4681 aataaatcat tctgaaataa tctcaagtgt tagaaaactt cttgtagtgc cttaaaataa
     4741 gattaacatt tagctctttt gtagaaagta agataataga tctttaattt gcagagagta
     4801 gtctcttagt gattattcat gtacatatag aatatagtga cgaaaatgtc catcaccacg
     4861 gtcaagtaaa tgtggaaaac attggatgta taagatacat ctttgtatct ttgtatgtat
     4921 ctttcaggac ctaccaagag tctttagtat tctaagatgc tttgagagtc cccagcgagg
     4981 gactgggaca tacactagtt cctaaactaa tttcactatg gtatcttatt gaaatgcatc
     5041 tcccaggact agtcttctat tgactaaggt ttggaaaaca cctaactaca ccaagtcatt
     5101 cactaataaa ggaatcaagg tatttattta tttaatataa actgtggtat aattatgaac
     5161 actgacaaat ctagtgcaag aatttacttg cgcttgttgc ttgagaattt ggtcatttcc
     5221 agaggaatat ttgaacaagt gtttcagcag gaatgtcttg acccaagaag gatgactgca
     5281 gataagtagt cttaatggta aacatgagtt atattagata cttgaaacat aatcatgata
     5341 tgcaaagtaa tataaaatgc ttaagatgtg gtcagaatgt ggttcaaacc cttatgaaaa
     5401 actattaatg atgtattggg tctaacatga taaaagtttg tctttaatga gagtctaacg
     5461 tcacccatca gcagatgata agagctttgt ataacagaca atatatctag atgcccttgc
     5521 tggccatctg aaagactctt cttatataaa caaaaaggcc tgtttgtggc tgataagttt
     5581 ccttcagagc tggaatttat taaaaatttg ttgtatttgt gggagacaaa atctactgag
     5641 ccaatttatt ttctgtggtt aagttttcct taagcagtat gttagacact ttgggagcct
     5701 tcagaagttt cgtctttcat ttctatttgt ccttatgaaa tattgccaaa ttagtctccc
     5761 tctttaaaaa tataggaaaa atactgctat tcaatatatt tagggagtta tacactgaat
     5821 ggtactataa tggcctaaac tgaactattt tatatagtta tcaaaaatac taaaattttg
     5881 gcttggaaag tagtgtctag acttttgtac agaaatgaca ccatttttat aactttatag
     5941 caaggcagcc ttcaatattt tatatagaag tagaaatata cagtgaaggt aagcaaattc
     6001 caaattttgt cctaagaaca ggtgcaagcg gacataaacc acataaattg gcactgttgt
     6061 aacaaaaacc ttcaagaata ataacaaaac tatgtaaatt tagccaagct ctgttctatt
     6121 acagatgctg ctgttgctag tgatagaata agataacttt ttaaaggtca agaaacataa
     6181 taaaatttat tttttaaaat ggcaatacag tatgctgtta gcagtaaaaa tgttaatata
     6241 ttgccatggt tataatatat ctgattttgt ggaaaatata tgacagtgtg tgtgaataca
     6301 gagtatataa acattaatgc aatctaagaa aatacaattt caacatatta cctcattttc
     6361 attaaaatga tgaaaatgtg aattcagaaa atcacatagt ccttagtcta aaaataggta
     6421 gatcatcaaa ccctaatatc atttaaactc aaattggtat ttgttcagta aatgttctac
     6481 atcataatgt gatgtacaaa ggaaaactca acatttgtgg aagaaaatga agggattatt
     6541 tttaagaaaa gcaactttag ctaatcccgt tatgtttctg actcttccaa actgaagcaa
     6601 cagtcttgtt gtcatgaaac atttactgca aataaagaat aagtacattc ttcagaagtt
     6661 agcttcttac ttatatttgt gtttttgaat ttttttcctg accatttcta attttctgca
     6721 tttcatctcc tctagttcca cttattacca tgtgaagcat tcccacatta ttctctctta
     6781 aaaatactaa atggtcattg cctattttgg ttgttttaac taaaacattg agttcttata
     6841 aatgtataca aagtgcaaag gcagattcca cttctgcatt attgtctaca cttttggatt
     6901 aatacttttt tcagcatttt ggtccacata gtatccattt ttttctgagc aacaggcaaa
     6961 tggtttcact tctcttaagt tgtgtggttt agaatctcct gagaatgtac atcctgataa
     7021 accaggagaa gctcacttct agagctgaaa tgttctaata tcgatcttgc ttcttatacg
     7081 tgctagaaat tcccacacca gtttgcacat ctgacctagg tacttaatta ttaaataggg
     7141 gattacagat ttctagagaa ctccatggca ccataacacc ttgctaagta atcccaaggc
     7201 tttgggaaaa taaaaggaag ttctttataa aggttggagt ctgctttatt accttcctta
     7261 gcttattatt tctcatctac tatctttttt acttttctta tgtaatagaa catccaatgg
     7321 aataggaagc agatgatgtg tgttccaatc ctggttctgc tatgatctac ctgagtggga
     7381 cagggtcttc gtttcttaaa aataaaaacc aactttgtct atataggaag cactagtctc
     7441 tgtagtaaag tagtgtcatt tccccattgt atataaaaaa aaatctcacc gacgatcaga
     7501 agactcttct ttgtgattct gagtctgtcg ggtatcatca ggatgtcagg atctgtaaga
     7561 atgagacgaa ggaaacttgt taccaggtcg tgctcatctt cacccattct ataaaaacac
     7621 cgtacatata cccactaaat tcagtctcaa gatcacaagt aagttaaaag ttatttacac
     7681 agggcttccc tggtggtgca gtggttgaga gtccgcttgc cgatgcaggg gacacgggtt
     7741 cgtgccccag tccgggagga tcccacatgc agcagagcgg ctgggtccgt gagccatggc
     7801 cactgagcct gcgtgtccgg agcctgtact ccgcaacggg agaggccaca acagtgagag
     7861 gcccgcg
//
LOCUS       XM_032606744            8007 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulin tyrosine ligase like 7 (TTLL7),
            transcript variant X2, mRNA.
ACCESSION   XM_032606744
VERSION     XM_032606744.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8007
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8007
                     /gene="TTLL7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     50% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740797"
     CDS             443..3202
                     /gene="TTLL7"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL7 isoform X1"
                     /protein_id="XP_032462635.1"
                     /db_xref="GeneID:116740797"
                     /translation="MPSLPQERVIQGPSPLDLNTELPYQSTMKRKVRKKKKKGTITAN
                     VAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKIAELQNYQRINHFPGMG
                     EICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVK
                     PANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKI
                     FLYHDGLVRMGTEKYIPPNETNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIRW
                     FTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLG
                     FDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRRNLAKQ
                     KAEAQRRLYGQNSIKRLLPGSSDSEQQRHQLERRKEELKERLAQVRKQISKEEHENRH
                     MGNYRRIYPPEDKTLLEKYENLLAVAFQTFLSGRAASFQREMNNPLKRMKEEDILDLL
                     EQCEIDDEKLMGKTAKSRGPKPLSSMPESTEITKRQKYYSSDSSYGSSSSSSESEENE
                     KEEYQNKKREKQVTYNLKQSNHYRLIQPSSSIRRSVSCPRSISSQSPSSADNRPFSAQ
                     QVISSSRSASGSRSHSLNRASSYMGHPPQRNVSSSTNSLMSESLRQLRPKEQEDDLTS
                     QTLFVLKDMKIRFPGKSDAESLLLIEDMIGNWKYHKTKVASYWLIKLDSVKQRKVLDI
                     VKTSVRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSHGQGLWNCFCDSGSSWESIFS
                     KSPEVVTPLQLQCCQRLVELCKQCLLVVYKYATDSRGSLSGIGTNWGNSRYLLPGSTQ
                     FFMRTPTYNLKYSSPGMARSNVLFTSRKWRNGPKAEGELRGANWPALIHKLDNWQPKV
                     FHLKF"
     misc_feature    713..1570
                     /gene="TTLL7"
                     /note="Tubulin-tyrosine ligase family; Region: TTL;
                     pfam03133"
                     /db_xref="CDD:397308"
     misc_feature    1580..1783
                     /gene="TTLL7"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cl21462"
                     /db_xref="CDD:473870"
     misc_feature    1592..1783
                     /gene="TTLL7"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269866"
     misc_feature    order(1601..1606,1631..1639,1643..1654,1655..1657,
                     1661..1669)
                     /gene="TTLL7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269866"
     misc_feature    order(1664..1666,1697..1702,1709..1714,1718..1723,
                     1730..1735,1739..1744,1751..1756,1760..1765,1772..1777,
                     1781..1783)
                     /gene="TTLL7"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269866"
ORIGIN      
        1 ggagcagccg atattcagcg cgggctgccg ggcccggggc agctgcggtg ggaagccgag
       61 gtgcgcggga gccgtggagg gaccgtccgc agcccggagg cgaggacccg ggctgggatt
      121 tccttacccc gaactgtggg tgctgcagcc tgcttcttcc tgagatgaat cagcgatgct
      181 gtctgccagt ctgctccagc catggctagc tgttcattct aatagttggg cccataatgt
      241 tccgtgaagc tgcataaagt agaaggtccc ttcttatctc ataatgtcaa tgtcctgaaa
      301 tctgaggatt ccaccaagat aatatgatag gaactttcag tgatttggag ccgtatccta
      361 cttagactaa tgcaggcctt ccaggtttcc taagagcttg tacagcagcg cacactgctg
      421 ttgttaatcg gcacaggcaa gaatgccatc tttgcctcaa gaaagagtta ttcagggacc
      481 ctctcccctg gatctgaata cagaattgcc ttatcagagc acgatgaaaa ggaaagtcag
      541 aaagaagaaa aagaagggaa ccattacagc aaatgttgct gggacaaagt ttgaaattgt
      601 tcgtttagta atagatgaaa tgggatttat gaaaacgcca gatgaggatg aaacaagtaa
      661 ccttatatgg tgtgattcag ctgttcagca ggagaagatt gcagagctgc aaaattacca
      721 gaggatcaac cattttccag gaatggggga gatctgtagg aaggatttcc tagcaagaaa
      781 tatgaccaaa atgatcaagt cccggcctct ggattatacc tttgttcctc gaacatggat
      841 cttccctgct gagtatacac aatttcagaa ttatatgaaa gaattaaaga aaaaaagaaa
      901 gcagaagact tttatagtaa aaccagctaa tggtgcaatg ggtcatggga tttctttgat
      961 aagaaatggt gacaaacttc catctcagga tcatttgatt gttcaagaat acattgaaaa
     1021 acctttccta atggaaggtt acaagtttga tttacgaatt tatattctgg taacatcgtg
     1081 tgatccacta aaaatatttc tctaccacga tggacttgtg cgaatgggaa cagagaagta
     1141 cattccacct aatgagacca atttgaccca gttatacatg catctgacaa actactctgt
     1201 gaacaagcac aatgagcatt ttgaaaggga tgaaactgaa aacaaaggca gcaaacgttc
     1261 catcagatgg tttacagaat ttctacaagc aaatcaacat gatgttgcta agttttggag
     1321 tgatatttca gaattggtgg taaagactct gattgtagca gaacctcatg tcctgcatgc
     1381 atatcgaatg tgcagacctg gtcaacctcc aggaagtgaa agtgtctgct tcgaagtcct
     1441 gggatttgat attttgttgg atagaaaact aaagccatgg cttctagaga tcaatcgagc
     1501 tccaagcttt ggaactgatc agaaaataga ctatgatgta aaaaggggag tgctgctaaa
     1561 tgcactgaag ctactaaata tcaggaccag tgataaaagg agaaacttgg ctaaacaaaa
     1621 agctgaggct caaaggagac tttatggtca aaattcaatc aaaaggcttt taccgggttc
     1681 ctcagactca gaacagcaaa gacatcagtt ggagaggcgg aaagaagagt tgaaggagag
     1741 acttgctcag gtacggaagc agatctcgaa agaagaacat gaaaatcgac acatggggaa
     1801 ttacaggcga atttatcctc ctgaagataa aacactactt gaaaagtatg aaaatttgtt
     1861 ggctgttgcc tttcagacct tcctttcagg aagagcagct tcattccagc gagagatgaa
     1921 taatcctttg aaaaggatga aggaggaaga tattttggat cttctggagc aatgtgaaat
     1981 tgatgacgaa aagttgatgg gcaaaactgc caagtctcga ggaccaaagc ctctgtcttc
     2041 catgcccgag agtaccgaga taacaaaaag acagaagtac tacagcagtg acagcagcta
     2101 tggtagtagc agcagctctt cagaatcaga agaaaatgaa aaagaagagt accaaaataa
     2161 gaaaagagaa aagcaagtta catataatct taaacagtcc aaccactaca gattaatcca
     2221 accatccagc tccataaggc gttcagtcag ttgccctcgg tccatctctt ctcaatcacc
     2281 atccagtgca gacaaccgcc ccttttctgc tcaacaagtg atatcatcat cccggtcagc
     2341 ttcagggtct cggtcacatt ctttaaaccg tgcttcctcc tacatggggc atccgcctca
     2401 aagaaatgtt tccagctcta ccaactctct gatgagtgag tctttgcggc aactgagacc
     2461 aaaagaacaa gaagatgatc taacaagtca gaccttattt gttctcaagg acatgaagat
     2521 ccggtttcca ggaaaatcag atgcagaatc attacttctg atagaagata tgattggtaa
     2581 ctggaagtat cataaaacaa aagtggcttc atattggctc ataaaattgg actctgtaaa
     2641 acaacgaaaa gttttggaca tagtaaaaac aagtgtccgt acagttcttc cacgcatctg
     2701 gaaggtacct gatgttgagg aagtaaattt atatcggatt ttcaaccgag tttttaatcg
     2761 cttactctgg agtcatggac aaggactgtg gaactgtttc tgtgattcag gatcctcttg
     2821 ggagagtatt ttcagtaaaa gcccggaggt ggtgactcct ttgcagctcc aatgttgcca
     2881 gcgcctggtc gagctttgta aacagtgcct gctagtggtt tacaaatatg caactgactc
     2941 aagaggatca ctctcaggca ttggtaccaa ttggggtaat tccaggtatt tactaccagg
     3001 aagtacacaa ttcttcatga gaacaccaac ctacaacttg aaatacagtt cacctggaat
     3061 ggctcgctcc aatgttttgt ttacatcccg taaatggaga aatggtccca aagcagaagg
     3121 agaattgaga ggggcaaact ggcctgcttt aattcacaag ctggataact ggcaacccaa
     3181 agttttccat ttgaagtttt gacctttgca tggacaaatt caagaaaaga gaaatcctgc
     3241 cttttaaaca ttggtttatg gtggtgtatt tttgcttcag caacaataaa acttataaga
     3301 tgtgttattg gatcaagttc agtttttctg ctgagatttt taagaacaag gttgaacttt
     3361 caatgtctaa aaagcattaa ttgtctggat ccatatgaac caagataatg accacaaata
     3421 acagtcgtgc gaccaaaaat tgttaaatta agactaattg cacactttga gattcttgcc
     3481 cttttttggt gcttttttgc cttgttatgg gtattgaagg aaaactattc aggtgaaaca
     3541 ttctgcatta actgggctgt attacctaaa aagagctaca taaagttttt attttatccc
     3601 cacctgctaa tttgaaaact attggtaaag tcatcattca gtacactaat attttctaaa
     3661 ttagtaagaa gtcttacctt acaaaaataa tcagataatg ctgatatttc tctttcaaag
     3721 gctaacaatg acagttcctg gtcctgagct ggttggttca tacaataact aatgtacatg
     3781 ttactacatt gaatattgat agatttgctg aagattctgg gtttgagggt tagcttgaaa
     3841 gcaatacatt tgctaccatg aatcatgact caaattatcc ccgtgtgttt tactacctgt
     3901 atatgaatgc aaatgttgtt acagaaaata tgcttgaaat gtcaacacaa tgtgcaatta
     3961 gtattgcatt gtcatgcttc agcatgtgat atctgtatgg tgaagttatt tcaattactc
     4021 agatatgtta ctataataaa aaatgtttaa tataagaaag ctacatatgt catcaaatgg
     4081 ttatttctgt actccccctc ccccccacac actgttttta gtagtagaag agactggctc
     4141 tcaattaagc tttcagcgtg atgaaatata ttttcacagt aattttcttc tgctgtagag
     4201 tcagcagtag aactgtgggg ataactttac ctgctattaa agtcaggttg agtaaacaga
     4261 gttggtgtca attcctctct tagttagctg gaaggtagac tggtctaaaa tttagaaatg
     4321 acatttttat atctttctag catcattata acaatagtat tactaatctg aatagaaatg
     4381 tgtcagcatc tcagctatga catttttttc aggaatttat aattttatca ctattaaaat
     4441 atactaaacc tcaataagta gcatatcata gtcttattgc cactattacc attgtctata
     4501 agatgattgt atataaagaa attgaatatt tttcctttaa agaaaggaag ctctttggat
     4561 aaaaatctat catgatagga actttaatgc atgtatacct cagcaacaag tgatatggat
     4621 attgactttt taaatgtatt tttaaagatt tgttatttta taaagtaaaa atattctata
     4681 aaatctttaa actttgaatt tttttcagtg acagataaag atgagaccaa tgtgggtagt
     4741 ttagtatctc cctattatat caaataattt gtaagataaa tatacatata gtaaatgatt
     4801 gaaaatcttt taaaactata aataaatcat tctgaaataa tctcaagtgt tagaaaactt
     4861 cttgtagtgc cttaaaataa gattaacatt tagctctttt gtagaaagta agataataga
     4921 tctttaattt gcagagagta gtctcttagt gattattcat gtacatatag aatatagtga
     4981 cgaaaatgtc catcaccacg gtcaagtaaa tgtggaaaac attggatgta taagatacat
     5041 ctttgtatct ttgtatgtat ctttcaggac ctaccaagag tctttagtat tctaagatgc
     5101 tttgagagtc cccagcgagg gactgggaca tacactagtt cctaaactaa tttcactatg
     5161 gtatcttatt gaaatgcatc tcccaggact agtcttctat tgactaaggt ttggaaaaca
     5221 cctaactaca ccaagtcatt cactaataaa ggaatcaagg tatttattta tttaatataa
     5281 actgtggtat aattatgaac actgacaaat ctagtgcaag aatttacttg cgcttgttgc
     5341 ttgagaattt ggtcatttcc agaggaatat ttgaacaagt gtttcagcag gaatgtcttg
     5401 acccaagaag gatgactgca gataagtagt cttaatggta aacatgagtt atattagata
     5461 cttgaaacat aatcatgata tgcaaagtaa tataaaatgc ttaagatgtg gtcagaatgt
     5521 ggttcaaacc cttatgaaaa actattaatg atgtattggg tctaacatga taaaagtttg
     5581 tctttaatga gagtctaacg tcacccatca gcagatgata agagctttgt ataacagaca
     5641 atatatctag atgcccttgc tggccatctg aaagactctt cttatataaa caaaaaggcc
     5701 tgtttgtggc tgataagttt ccttcagagc tggaatttat taaaaatttg ttgtatttgt
     5761 gggagacaaa atctactgag ccaatttatt ttctgtggtt aagttttcct taagcagtat
     5821 gttagacact ttgggagcct tcagaagttt cgtctttcat ttctatttgt ccttatgaaa
     5881 tattgccaaa ttagtctccc tctttaaaaa tataggaaaa atactgctat tcaatatatt
     5941 tagggagtta tacactgaat ggtactataa tggcctaaac tgaactattt tatatagtta
     6001 tcaaaaatac taaaattttg gcttggaaag tagtgtctag acttttgtac agaaatgaca
     6061 ccatttttat aactttatag caaggcagcc ttcaatattt tatatagaag tagaaatata
     6121 cagtgaaggt aagcaaattc caaattttgt cctaagaaca ggtgcaagcg gacataaacc
     6181 acataaattg gcactgttgt aacaaaaacc ttcaagaata ataacaaaac tatgtaaatt
     6241 tagccaagct ctgttctatt acagatgctg ctgttgctag tgatagaata agataacttt
     6301 ttaaaggtca agaaacataa taaaatttat tttttaaaat ggcaatacag tatgctgtta
     6361 gcagtaaaaa tgttaatata ttgccatggt tataatatat ctgattttgt ggaaaatata
     6421 tgacagtgtg tgtgaataca gagtatataa acattaatgc aatctaagaa aatacaattt
     6481 caacatatta cctcattttc attaaaatga tgaaaatgtg aattcagaaa atcacatagt
     6541 ccttagtcta aaaataggta gatcatcaaa ccctaatatc atttaaactc aaattggtat
     6601 ttgttcagta aatgttctac atcataatgt gatgtacaaa ggaaaactca acatttgtgg
     6661 aagaaaatga agggattatt tttaagaaaa gcaactttag ctaatcccgt tatgtttctg
     6721 actcttccaa actgaagcaa cagtcttgtt gtcatgaaac atttactgca aataaagaat
     6781 aagtacattc ttcagaagtt agcttcttac ttatatttgt gtttttgaat ttttttcctg
     6841 accatttcta attttctgca tttcatctcc tctagttcca cttattacca tgtgaagcat
     6901 tcccacatta ttctctctta aaaatactaa atggtcattg cctattttgg ttgttttaac
     6961 taaaacattg agttcttata aatgtataca aagtgcaaag gcagattcca cttctgcatt
     7021 attgtctaca cttttggatt aatacttttt tcagcatttt ggtccacata gtatccattt
     7081 ttttctgagc aacaggcaaa tggtttcact tctcttaagt tgtgtggttt agaatctcct
     7141 gagaatgtac atcctgataa accaggagaa gctcacttct agagctgaaa tgttctaata
     7201 tcgatcttgc ttcttatacg tgctagaaat tcccacacca gtttgcacat ctgacctagg
     7261 tacttaatta ttaaataggg gattacagat ttctagagaa ctccatggca ccataacacc
     7321 ttgctaagta atcccaaggc tttgggaaaa taaaaggaag ttctttataa aggttggagt
     7381 ctgctttatt accttcctta gcttattatt tctcatctac tatctttttt acttttctta
     7441 tgtaatagaa catccaatgg aataggaagc agatgatgtg tgttccaatc ctggttctgc
     7501 tatgatctac ctgagtggga cagggtcttc gtttcttaaa aataaaaacc aactttgtct
     7561 atataggaag cactagtctc tgtagtaaag tagtgtcatt tccccattgt atataaaaaa
     7621 aaatctcacc gacgatcaga agactcttct ttgtgattct gagtctgtcg ggtatcatca
     7681 ggatgtcagg atctgtaaga atgagacgaa ggaaacttgt taccaggtcg tgctcatctt
     7741 cacccattct ataaaaacac cgtacatata cccactaaat tcagtctcaa gatcacaagt
     7801 aagttaaaag ttatttacac agggcttccc tggtggtgca gtggttgaga gtccgcttgc
     7861 cgatgcaggg gacacgggtt cgtgccccag tccgggagga tcccacatgc agcagagcgg
     7921 ctgggtccgt gagccatggc cactgagcct gcgtgtccgg agcctgtact ccgcaacggg
     7981 agaggccaca acagtgagag gcccgcg
//
LOCUS       XM_032606752           11494 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulin tyrosine ligase like 7 (TTLL7),
            transcript variant X3, mRNA.
ACCESSION   XM_032606752
VERSION     XM_032606752.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11494
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..11494
                     /gene="TTLL7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 7
                     Proteins, and 65% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740797"
     CDS             303..2966
                     /gene="TTLL7"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL7 isoform X2"
                     /protein_id="XP_032462643.1"
                     /db_xref="GeneID:116740797"
                     /translation="MPSLPQERVIQGPSPLDLNTELPYQSTMKRKVRKKKKKGTITAN
                     VAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKIAELQNYQRINHFPGMG
                     EICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVK
                     PANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKI
                     FLYHDGLVRMGTEKYIPPNETNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIRW
                     FTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLG
                     FDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRRNLAKQ
                     KAEAQRRLYGQNSIKRLLPGSSDSEQQRHQLERRKEELKERLAQVRKQISKEEHENRH
                     MGNYRRIYPPEDKTLLEKYENLLAVAFQTFLSGRAASFQREMNNPLKRMKEEDILDLL
                     EQCEIDDEKLMGKTAKSRGPKPLSSMPESTEITKRQKYYSSDSSYGSSSSSSESEENE
                     KEEYQNKKREKQVTYNLKQSNHYRLIQPSSSIRRSVSCPRSISSQSPSSADNRPFSAQ
                     QVISSSRSASGSRSHSLNRASSYMGHPPQRNVSSSTNSLMSESLRQLRPKEQEDDLTS
                     QTLFVLKDMKIRFPGKSDAESLLLIEDMIGNWKYHKTKVASYWLIKLDSVKQRKVLDI
                     VKTSVRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSHGQGLWNCFCDSGSSWESIFS
                     KSPEVVTPLQLQCCQRLVELCKQCLLVVYKYATDSRGSLSGIGTNWGNSRYLLPGSTQ
                     FFMRTPTYNLKYSSPGMARSNVLFTSRYGHL"
     misc_feature    573..1430
                     /gene="TTLL7"
                     /note="Tubulin-tyrosine ligase family; Region: TTL;
                     pfam03133"
                     /db_xref="CDD:397308"
     misc_feature    1440..1643
                     /gene="TTLL7"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cl21462"
                     /db_xref="CDD:473870"
     misc_feature    1452..1643
                     /gene="TTLL7"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269866"
     misc_feature    order(1461..1466,1491..1499,1503..1514,1515..1517,
                     1521..1529)
                     /gene="TTLL7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269866"
     misc_feature    order(1524..1526,1557..1562,1569..1574,1578..1583,
                     1590..1595,1599..1604,1611..1616,1620..1625,1632..1637,
                     1641..1643)
                     /gene="TTLL7"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269866"
ORIGIN      
        1 gccgatattc agcgcgggct gccgggcccg gggcagctgc ggtgggaagc cgaggtgcgc
       61 gggagccgtg gagggaccgt ccgcagcccg gaggcgagga cccgggctgg gatttcctta
      121 ccccggtccc ttcttatctc ataatgtcaa tgtcctgaaa tctgaggatt ccaccaagat
      181 aatatgatag gaactttcag tgatttggag ccgtatccta cttagactaa tgcaggcctt
      241 ccaggtttcc taagagcttg tacagcagcg cacactgctg ttgttaatcg gcacaggcaa
      301 gaatgccatc tttgcctcaa gaaagagtta ttcagggacc ctctcccctg gatctgaata
      361 cagaattgcc ttatcagagc acgatgaaaa ggaaagtcag aaagaagaaa aagaagggaa
      421 ccattacagc aaatgttgct gggacaaagt ttgaaattgt tcgtttagta atagatgaaa
      481 tgggatttat gaaaacgcca gatgaggatg aaacaagtaa ccttatatgg tgtgattcag
      541 ctgttcagca ggagaagatt gcagagctgc aaaattacca gaggatcaac cattttccag
      601 gaatggggga gatctgtagg aaggatttcc tagcaagaaa tatgaccaaa atgatcaagt
      661 cccggcctct ggattatacc tttgttcctc gaacatggat cttccctgct gagtatacac
      721 aatttcagaa ttatatgaaa gaattaaaga aaaaaagaaa gcagaagact tttatagtaa
      781 aaccagctaa tggtgcaatg ggtcatggga tttctttgat aagaaatggt gacaaacttc
      841 catctcagga tcatttgatt gttcaagaat acattgaaaa acctttccta atggaaggtt
      901 acaagtttga tttacgaatt tatattctgg taacatcgtg tgatccacta aaaatatttc
      961 tctaccacga tggacttgtg cgaatgggaa cagagaagta cattccacct aatgagacca
     1021 atttgaccca gttatacatg catctgacaa actactctgt gaacaagcac aatgagcatt
     1081 ttgaaaggga tgaaactgaa aacaaaggca gcaaacgttc catcagatgg tttacagaat
     1141 ttctacaagc aaatcaacat gatgttgcta agttttggag tgatatttca gaattggtgg
     1201 taaagactct gattgtagca gaacctcatg tcctgcatgc atatcgaatg tgcagacctg
     1261 gtcaacctcc aggaagtgaa agtgtctgct tcgaagtcct gggatttgat attttgttgg
     1321 atagaaaact aaagccatgg cttctagaga tcaatcgagc tccaagcttt ggaactgatc
     1381 agaaaataga ctatgatgta aaaaggggag tgctgctaaa tgcactgaag ctactaaata
     1441 tcaggaccag tgataaaagg agaaacttgg ctaaacaaaa agctgaggct caaaggagac
     1501 tttatggtca aaattcaatc aaaaggcttt taccgggttc ctcagactca gaacagcaaa
     1561 gacatcagtt ggagaggcgg aaagaagagt tgaaggagag acttgctcag gtacggaagc
     1621 agatctcgaa agaagaacat gaaaatcgac acatggggaa ttacaggcga atttatcctc
     1681 ctgaagataa aacactactt gaaaagtatg aaaatttgtt ggctgttgcc tttcagacct
     1741 tcctttcagg aagagcagct tcattccagc gagagatgaa taatcctttg aaaaggatga
     1801 aggaggaaga tattttggat cttctggagc aatgtgaaat tgatgacgaa aagttgatgg
     1861 gcaaaactgc caagtctcga ggaccaaagc ctctgtcttc catgcccgag agtaccgaga
     1921 taacaaaaag acagaagtac tacagcagtg acagcagcta tggtagtagc agcagctctt
     1981 cagaatcaga agaaaatgaa aaagaagagt accaaaataa gaaaagagaa aagcaagtta
     2041 catataatct taaacagtcc aaccactaca gattaatcca accatccagc tccataaggc
     2101 gttcagtcag ttgccctcgg tccatctctt ctcaatcacc atccagtgca gacaaccgcc
     2161 ccttttctgc tcaacaagtg atatcatcat cccggtcagc ttcagggtct cggtcacatt
     2221 ctttaaaccg tgcttcctcc tacatggggc atccgcctca aagaaatgtt tccagctcta
     2281 ccaactctct gatgagtgag tctttgcggc aactgagacc aaaagaacaa gaagatgatc
     2341 taacaagtca gaccttattt gttctcaagg acatgaagat ccggtttcca ggaaaatcag
     2401 atgcagaatc attacttctg atagaagata tgattggtaa ctggaagtat cataaaacaa
     2461 aagtggcttc atattggctc ataaaattgg actctgtaaa acaacgaaaa gttttggaca
     2521 tagtaaaaac aagtgtccgt acagttcttc cacgcatctg gaaggtacct gatgttgagg
     2581 aagtaaattt atatcggatt ttcaaccgag tttttaatcg cttactctgg agtcatggac
     2641 aaggactgtg gaactgtttc tgtgattcag gatcctcttg ggagagtatt ttcagtaaaa
     2701 gcccggaggt ggtgactcct ttgcagctcc aatgttgcca gcgcctggtc gagctttgta
     2761 aacagtgcct gctagtggtt tacaaatatg caactgactc aagaggatca ctctcaggca
     2821 ttggtaccaa ttggggtaat tccaggtatt tactaccagg aagtacacaa ttcttcatga
     2881 gaacaccaac ctacaacttg aaatacagtt cacctggaat ggctcgctcc aatgttttgt
     2941 ttacatcccg gtatggccat ttgtgaaaca gagggaagat cgccatgggt tatgcataat
     3001 agcgattcat atttttccca acttaacatt gcaaagacag tgaccattaa gtgctgtttt
     3061 atatatatat gacatatatg tgtgtgaaac tatatacaca catgcactca aataacatat
     3121 atttattata atatatgaag gaagaattag caggaaactg gatataagat ttaacctttc
     3181 tggaaatgta ataaaccatg ttaaaattgt ttacacaaat atgtgaatgt ctagaatttg
     3241 ctaggtttat aattaatacc ttcctactag aaatgttatt tttgctgcag atatataaaa
     3301 cagaattgat cttgaagatc ccattacagt gttaaattat tttctaggta atatgtcttt
     3361 tgacttgaaa aagcattaat agtaaattac cttattaatt ctcatatata gtggctattt
     3421 aaaatgaaaa caaaaattag aagcctggtg ttgcttgatg ataagattaa gtatgaaaca
     3481 ggtttgtcat tactatagca cactgtaaag tactataaaa atcccaacca gattctccaa
     3541 gatttttatc cctcagtgtg gatggaaatt tagctacttg tgaaagtgat aatgtaaatt
     3601 ttcagtaagg atctagtaag gtcatactat gatctaaaat ggaagacaat ccagtgggtt
     3661 aaaaataaac aaaacttact agcttgtatt tttacttttt attgggagtc acataaaggg
     3721 aacagaaaat ggtggtaatg acaaaattgt tccatatgat tttggtatct cttaccgctg
     3781 ttaccactca cttttttttt gaaaagtata tctctgatga gtacatatgg tcaaatacaa
     3841 tttcttctgt tcaaagagct gatattttaa acttatttca gtgttacaga agtgtcacac
     3901 ttattttata agtctctcaa tgctgagacc aaattacatt gcaaagacta atacagagtt
     3961 tcatattgca ccatagaaaa taatctaaat tattgcaaat aggagattct gattactaaa
     4021 tattattagt tatcgatgtg cccttgagaa tttaaaaaaa aaatcaaaat agagtttgaa
     4081 gttttcttct tgtccaaagt tattatgtgt aagtttcata gcagtttact tccttttttt
     4141 ttgcttacag tttcaaaaac aatgagtgag ctttcagttt tctatacaaa tataaatagt
     4201 accatggata tccttagagg ttgcaatatt caccttttag aattttattt aaacttctcc
     4261 cagtattttt attctctcac agatggtaat tatttgcaac attcatgagt attttacctc
     4321 cttttactat cctgaaaact atttccagta aatggagaaa tggtcccaaa gcagaaggag
     4381 aattgagagg ggcaaactgg cctgctttaa ttcacaagct ggataactgg caacccaaag
     4441 ttgtaagttg atatattgtg cttttgaagc catgttctga ggctgtatta ggataaaata
     4501 ggttcttccc taaattattg ctggctactt gattctttat gactacctat catccgtatt
     4561 ccagtggata cttttccttg ctaattgcat cccaaagaag agtttgttat tgtctttgtg
     4621 ggaaaagagg ataaggatgt caggatgaag gaaattgcag tgtagctctg agtgtttatg
     4681 atgccatttt gtgaattctt aaatatgttt agaatttttt ggaataaata atgcaaaaat
     4741 tgggagagta acaaaattat tataagaatg atcatcaagt aggccttttc atggagcagt
     4801 tttagtcatt tttcattgaa atttatgatt ttgttcatga atgagacaca atttcaagtg
     4861 tctgatatat gatatcaacc cagtttgttg gccactcaat tgcattagct tgaatcacaa
     4921 cggtgactta atttgctaga gtgggtactt tggaagttct tttcttagtt gtataaaagt
     4981 gaaattttta tttaaaacga aaaaagaatg tctaacatgt ctccccctgg ggaaaaataa
     5041 atacaaaaaa aataaattta aatgtatgaa actacccagt tagttactga tgagcaaatt
     5101 tcattttcat tcctctagtt acctaagtct ggcattgttt gagtgctaga attttattgc
     5161 ccacatttgc ctctttatac tgatctagtc tgatatgatg aagttgtgaa taaaagccat
     5221 gtgctcatta tttatgtata ctacctggta tgctgtggac tacggttgtg ttaatgctta
     5281 ttccctaatg agaaactaag aaaagaagat acagtaataa accgtggaag tctttagagg
     5341 ccgtagaaat attttagtga tataaaatat tccttagttt ttattataaa ttttttattc
     5401 atagagttaa aacgtagcag tataagtgat agtatgggtc tgactctctc tcttctagga
     5461 gagaaaataa ctttatctga aaaactcaga agctattcaa tcttaccaag agattttgat
     5521 agggaatttg gtttacttgt gatgaaagca tattttcatt ctcttattaa aaaatacatc
     5581 cctgctcatt ctgtgactaa tgctttccag aactgtatat gtttggaatg attgcagaat
     5641 tgtacaagaa gtaacctttt aatgttaaat tatcatctat gaacattgta tgagattgca
     5701 gattagtttt cactctaata atccagcatt gtaataatta ccatttgctt tatgtattct
     5761 gttgaaggaa ctatttgtga ttcatattat gattattagc aacaaatttt atttcatgtt
     5821 gcatgtgtaa aactgaaatt ataacaggat caaatatgga aatgccaatg gtaacctcta
     5881 tcagatgcaa agatctatac aaattttttc atatatctga attaggtcta aatacacaaa
     5941 atttttctac taattcctcc ccccagaact aaaatgaacc aaactcaagc aaaaaacccc
     6001 gatcttcttc tcatctaata tttacacaca gctagatgat agtggcttct agacatcaag
     6061 aaaaagattt cattctaatt ctttttttaa tttggaaagt atatgattat agaattttgt
     6121 tacctaactc taaatttcac gttttaatat aaattaatcc aaatgctttc ttctttagca
     6181 tgacaaagtc attccattta aaacttctct ttaaatctaa acttccacat tatttatttt
     6241 caaaagtacc aaaaaattga tagttgcata aactctatta tttctagttt tctataaagc
     6301 attgcttcat tcttaaacgt atattcttga aaatataata ccaaatacct tgagaagagt
     6361 gacaataaat actttccttt tctgttctgt aattctgttt tacattttga gtcttagttt
     6421 acttggttct aagggttaaa caataaaaag tgtaagtaca attagttgtg ctcctgtgac
     6481 ctgatggttt ttgaaaattt cttttctctt taaattgaga aatttaataa agctttcaag
     6541 aactgaatta gttatctaaa tattttgcac taatgctact taccaataaa ttaaaatttt
     6601 gaaagtattt tgatgatcaa aattttactc cttacactgt tttttctttc ttcttctttt
     6661 ttaaacttaa gttccatttg aagttttgac ctttgcatgg acaaattcaa gaaaagagaa
     6721 atcctgcctt ttaaacattg gtttatggtg gtgtattttt gcttcagcaa caataaaact
     6781 tataagatgt gttattggat caagttcagt ttttctgctg agatttttaa gaacaaggtt
     6841 gaactttcaa tgtctaaaaa gcattaattg tctggatcca tatgaaccaa gataatgacc
     6901 acaaataaca gtcgtgcgac caaaaattgt taaattaaga ctaattgcac actttgagat
     6961 tcttgccctt ttttggtgct tttttgcctt gttatgggta ttgaaggaaa actattcagg
     7021 tgaaacattc tgcattaact gggctgtatt acctaaaaag agctacataa agtttttatt
     7081 ttatccccac ctgctaattt gaaaactatt ggtaaagtca tcattcagta cactaatatt
     7141 ttctaaatta gtaagaagtc ttaccttaca aaaataatca gataatgctg atatttctct
     7201 ttcaaaggct aacaatgaca gttcctggtc ctgagctggt tggttcatac aataactaat
     7261 gtacatgtta ctacattgaa tattgataga tttgctgaag attctgggtt tgagggttag
     7321 cttgaaagca atacatttgc taccatgaat catgactcaa attatccccg tgtgttttac
     7381 tacctgtata tgaatgcaaa tgttgttaca gaaaatatgc ttgaaatgtc aacacaatgt
     7441 gcaattagta ttgcattgtc atgcttcagc atgtgatatc tgtatggtga agttatttca
     7501 attactcaga tatgttacta taataaaaaa tgtttaatat aagaaagcta catatgtcat
     7561 caaatggtta tttctgtact ccccctcccc cccacacact gtttttagta gtagaagaga
     7621 ctggctctca attaagcttt cagcgtgatg aaatatattt tcacagtaat tttcttctgc
     7681 tgtagagtca gcagtagaac tgtggggata actttacctg ctattaaagt caggttgagt
     7741 aaacagagtt ggtgtcaatt cctctcttag ttagctggaa ggtagactgg tctaaaattt
     7801 agaaatgaca tttttatatc tttctagcat cattataaca atagtattac taatctgaat
     7861 agaaatgtgt cagcatctca gctatgacat ttttttcagg aatttataat tttatcacta
     7921 ttaaaatata ctaaacctca ataagtagca tatcatagtc ttattgccac tattaccatt
     7981 gtctataaga tgattgtata taaagaaatt gaatattttt cctttaaaga aaggaagctc
     8041 tttggataaa aatctatcat gataggaact ttaatgcatg tatacctcag caacaagtga
     8101 tatggatatt gactttttaa atgtattttt aaagatttgt tattttataa agtaaaaata
     8161 ttctataaaa tctttaaact ttgaattttt ttcagtgaca gataaagatg agaccaatgt
     8221 gggtagttta gtatctccct attatatcaa ataatttgta agataaatat acatatagta
     8281 aatgattgaa aatcttttaa aactataaat aaatcattct gaaataatct caagtgttag
     8341 aaaacttctt gtagtgcctt aaaataagat taacatttag ctcttttgta gaaagtaaga
     8401 taatagatct ttaatttgca gagagtagtc tcttagtgat tattcatgta catatagaat
     8461 atagtgacga aaatgtccat caccacggtc aagtaaatgt ggaaaacatt ggatgtataa
     8521 gatacatctt tgtatctttg tatgtatctt tcaggaccta ccaagagtct ttagtattct
     8581 aagatgcttt gagagtcccc agcgagggac tgggacatac actagttcct aaactaattt
     8641 cactatggta tcttattgaa atgcatctcc caggactagt cttctattga ctaaggtttg
     8701 gaaaacacct aactacacca agtcattcac taataaagga atcaaggtat ttatttattt
     8761 aatataaact gtggtataat tatgaacact gacaaatcta gtgcaagaat ttacttgcgc
     8821 ttgttgcttg agaatttggt catttccaga ggaatatttg aacaagtgtt tcagcaggaa
     8881 tgtcttgacc caagaaggat gactgcagat aagtagtctt aatggtaaac atgagttata
     8941 ttagatactt gaaacataat catgatatgc aaagtaatat aaaatgctta agatgtggtc
     9001 agaatgtggt tcaaaccctt atgaaaaact attaatgatg tattgggtct aacatgataa
     9061 aagtttgtct ttaatgagag tctaacgtca cccatcagca gatgataaga gctttgtata
     9121 acagacaata tatctagatg cccttgctgg ccatctgaaa gactcttctt atataaacaa
     9181 aaaggcctgt ttgtggctga taagtttcct tcagagctgg aatttattaa aaatttgttg
     9241 tatttgtggg agacaaaatc tactgagcca atttattttc tgtggttaag ttttccttaa
     9301 gcagtatgtt agacactttg ggagccttca gaagtttcgt ctttcatttc tatttgtcct
     9361 tatgaaatat tgccaaatta gtctccctct ttaaaaatat aggaaaaata ctgctattca
     9421 atatatttag ggagttatac actgaatggt actataatgg cctaaactga actattttat
     9481 atagttatca aaaatactaa aattttggct tggaaagtag tgtctagact tttgtacaga
     9541 aatgacacca tttttataac tttatagcaa ggcagccttc aatattttat atagaagtag
     9601 aaatatacag tgaaggtaag caaattccaa attttgtcct aagaacaggt gcaagcggac
     9661 ataaaccaca taaattggca ctgttgtaac aaaaaccttc aagaataata acaaaactat
     9721 gtaaatttag ccaagctctg ttctattaca gatgctgctg ttgctagtga tagaataaga
     9781 taacttttta aaggtcaaga aacataataa aatttatttt ttaaaatggc aatacagtat
     9841 gctgttagca gtaaaaatgt taatatattg ccatggttat aatatatctg attttgtgga
     9901 aaatatatga cagtgtgtgt gaatacagag tatataaaca ttaatgcaat ctaagaaaat
     9961 acaatttcaa catattacct cattttcatt aaaatgatga aaatgtgaat tcagaaaatc
    10021 acatagtcct tagtctaaaa ataggtagat catcaaaccc taatatcatt taaactcaaa
    10081 ttggtatttg ttcagtaaat gttctacatc ataatgtgat gtacaaagga aaactcaaca
    10141 tttgtggaag aaaatgaagg gattattttt aagaaaagca actttagcta atcccgttat
    10201 gtttctgact cttccaaact gaagcaacag tcttgttgtc atgaaacatt tactgcaaat
    10261 aaagaataag tacattcttc agaagttagc ttcttactta tatttgtgtt tttgaatttt
    10321 tttcctgacc atttctaatt ttctgcattt catctcctct agttccactt attaccatgt
    10381 gaagcattcc cacattattc tctcttaaaa atactaaatg gtcattgcct attttggttg
    10441 ttttaactaa aacattgagt tcttataaat gtatacaaag tgcaaaggca gattccactt
    10501 ctgcattatt gtctacactt ttggattaat acttttttca gcattttggt ccacatagta
    10561 tccatttttt tctgagcaac aggcaaatgg tttcacttct cttaagttgt gtggtttaga
    10621 atctcctgag aatgtacatc ctgataaacc aggagaagct cacttctaga gctgaaatgt
    10681 tctaatatcg atcttgcttc ttatacgtgc tagaaattcc cacaccagtt tgcacatctg
    10741 acctaggtac ttaattatta aataggggat tacagatttc tagagaactc catggcacca
    10801 taacaccttg ctaagtaatc ccaaggcttt gggaaaataa aaggaagttc tttataaagg
    10861 ttggagtctg ctttattacc ttccttagct tattatttct catctactat cttttttact
    10921 tttcttatgt aatagaacat ccaatggaat aggaagcaga tgatgtgtgt tccaatcctg
    10981 gttctgctat gatctacctg agtgggacag ggtcttcgtt tcttaaaaat aaaaaccaac
    11041 tttgtctata taggaagcac tagtctctgt agtaaagtag tgtcatttcc ccattgtata
    11101 taaaaaaaaa tctcaccgac gatcagaaga ctcttctttg tgattctgag tctgtcgggt
    11161 atcatcagga tgtcaggatc tgtaagaatg agacgaagga aacttgttac caggtcgtgc
    11221 tcatcttcac ccattctata aaaacaccgt acatataccc actaaattca gtctcaagat
    11281 cacaagtaag ttaaaagtta tttacacagg gcttccctgg tggtgcagtg gttgagagtc
    11341 cgcttgccga tgcaggggac acgggttcgt gccccagtcc gggaggatcc cacatgcagc
    11401 agagcggctg ggtccgtgag ccatggccac tgagcctgcg tgtccggagc ctgtactccg
    11461 caacgggaga ggccacaaca gtgagaggcc cgcg
//
LOCUS       XR_004345957            9265 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulin tyrosine ligase like 7 (TTLL7),
            transcript variant X4, misc_RNA.
ACCESSION   XR_004345957
VERSION     XR_004345957.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9265
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9265
                     /gene="TTLL7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 7
                     Proteins, and 57% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740797"
     misc_RNA        1..9265
                     /gene="TTLL7"
                     /product="tubulin tyrosine ligase like 7, transcript
                     variant X4"
                     /db_xref="GeneID:116740797"
ORIGIN      
        1 gccgatattc agcgcgggct gccgggcccg gggcagctgc ggtgggaagc cgaggtgcgc
       61 gggagccgtg gagggaccgt ccgcagcccg gaggcgagga cccgggctgg gatttcctta
      121 ccccggtccc ttcttatctc ataatgtcaa tgtcctgaaa tctgaggatt ccaccaagat
      181 aatatgatag gaactttcag tgatttggag ccgtatccta cttagactaa tgcaggcctt
      241 ccaggtttcc taagagcttg tacagcagcg cacactgctg ttgttaatcg gcacaggcaa
      301 gaatgccatc tttgcctcaa gaaagagtta ttcagggacc ctctcccctg gatctgaata
      361 cagaattgcc ttatcagagc acgatgaaaa ggaaagtcag aaagaagaaa aagaagggaa
      421 ccattacagc aaatgttgct gggacaaagt ttgaaattgt tcgtttagta atagatgaaa
      481 tgggatttat gaaaacgcca gatgaggatg aaacaagtaa ccttatatgg tgtgattcag
      541 ctgttcagca ggagaagatt gcagagctgc aaaattacca gaggatcaac cattttccag
      601 gaatggggga gatctgtagg aaggatttcc tagcaagaaa tatgaccaaa atgatcaagt
      661 cccggcctct ggattatacc tttgttcctc gaacatggat cttccctgct gagtatacac
      721 aatttcagaa ttatatgaaa gaattaaaga aaaaaagaaa gcagaagact tttatagtaa
      781 aaccagctaa tggtgcaatg ggtcatggga tttctttgat aagaaatggt gacaaacttc
      841 catctcagga tcatttgatt gttcaagaat acattgaaaa acctttccta atggaaggtt
      901 acaagtttga tttacgaatt tatattctgg taacatcgtg tgatccacta aaaatatttc
      961 tctaccacga tggacttgtg cgaatgggaa cagagaagta cattccacct aatgagacca
     1021 atttgaccca gttatacatg catctgacaa actactctgt gaacaagcac aatgagcatt
     1081 ttgaaaggga tgaaactgaa aacaaaggca gcaaacgttc catcagatgg tttacagaat
     1141 ttctacaagc aaatcaacat gatgttgcta agttttggag tgatatttca gaattggtgg
     1201 taaagactct gattgtagca gaacctcatg tcctgcatgc atatcgaatg tgcagacctg
     1261 gtcaacctcc aggaagtgaa agtgtctgct tcgaagtcct gggatttgat attttgttgg
     1321 atagaaaact aaagccatgg cttctagaga tcaatcgagc tccaagcttt ggaactgatc
     1381 agaaaataga ctatgatgta aaaaggggag tgctgctaaa tgcactgaag ctactaaata
     1441 tcaggaccag tgataaaagg agaaacttgg ctaaacaaaa agctgaggct caaaggagac
     1501 tttatggtca aaattcaatc aaaaggcttt taccgggttc ctcagactca gaacagcaaa
     1561 gacatcagtt ggagaggcgg aaagaagagt tgaaggagag acttgctcag gtacggaagc
     1621 agatctcgaa agaagaacat gaaaatcgac acatggggaa ttacaggcga atttatcctc
     1681 ctgaagataa aacactactt gaaaagtatg aaaatttgtt ggctgttgcc tttcagacct
     1741 tcctttcagg aagagcagct tcattccagc gagagatgaa taatcctttg aaaaggatga
     1801 aggaggaaga tattttggat cttctggagc aatgtgaaat tgatgacgaa aagttgatgg
     1861 gcaaaactgc caagtctcga ggaccaaagc ctctgtcttc catgcccgag agtaccgaga
     1921 taacaaaaag acagaagtac tacagcagtg acagcagcta tggtagtagc agcagctctt
     1981 cagaatcaga agaaaatgaa aaagaagagt accaaaataa gaaaagagaa aagcaagtta
     2041 catataatct taaacagtcc aaccactaca gattaatcca accatccagc tccataaggc
     2101 gttcagtcag ttgccctcgg tccatctctt ctcaatcacc atccagtgca gacaaccgcc
     2161 ccttttctgc tcaacaagtg atatcatcat cccggtcagc ttcagggtct cggtcacatt
     2221 ctttaaaccg tgcttcctcc tacatggggc atccgcctca aagaaatgtt tccagctcta
     2281 ccaactctct gatgagtgag tctttgcggc aactgagacc aaaagaacaa gaagatgatc
     2341 taacaagtca gaccttattt gttctcaagg acatgaagat ccggtttcca ggaaaatcag
     2401 atgcagaatc attacttctg atagaagata tgattggtaa ctggaagtat cataaaacaa
     2461 aagtggcttc atattggctc ataaaattgg actctgtaaa acaacgaaaa gttttggaca
     2521 tagtaaaaac aagtgtccgt acagttcttc cacgcatctg gaaggtacct gatgttgagg
     2581 aagtaaattt atatcggatt ttcaaccgag tttttaatcg cttactctgg agtcatggac
     2641 aaggactgtg gaactgtttc tgtgattcag gatcctcttg ggagagtatt ttcagtaaaa
     2701 gcccggaggt ggtgactcct ttgcagctcc aatgttgcca gcgcctggtc gagctttgta
     2761 aacagtgcct gctagtggtt tacaaatatg caactgactc aagaggatca ctctcaggca
     2821 ttggtaccaa ttggggtaat tccaggtatt tactaccagg aagtacacaa ttcttcatga
     2881 gaacaccaac ctacaacttg aaatacagtt cacctggaat ggctcgctcc aatgttttgt
     2941 ttacatcccg gtatggccat ttgtgaaaca gagggaagat cgccatgggt tatgcataat
     3001 agcgattcat atttttccca acttaacatt gcaaagacag tgaccattaa gtgctgtttt
     3061 atatatatat gacatatatg tgtgtgaaac tatatacaca catgcactca aataacatat
     3121 atttattata atatatgaag gaagaattag caggaaactg gatataagat ttaacctttc
     3181 tggaaatgta ataaaccatg ttaaaattgt ttacacaaat atgtgaatgt ctagaatttg
     3241 ctaggtttat aattaatacc ttcctactag aaatgttatt tttgctgcag atatataaaa
     3301 cagaattgat cttgaagatc ccattacagt gttaaattat tttctaggta atatgtcttt
     3361 tgacttgaaa aagcattaat agtaaattac cttattaatt ctcatatata gtggctattt
     3421 aaaatgaaaa caaaaattag aagcctggtg ttgcttgatg ataagattaa gtatgaaaca
     3481 ggtttgtcat tactatagca cactgtaaag tactataaaa atcccaacca gattctccaa
     3541 gatttttatc cctcagtgtg gatggaaatt tagctacttg tgaaagtgat aatgtaaatt
     3601 ttcagtaagg atctagtaag gtcatactat gatctaaaat ggaagacaat ccagtgggtt
     3661 aaaaataaac aaaacttact agcttgtatt tttacttttt attgggagtc acataaaggg
     3721 aacagaaaat ggtggtaatg acaaaattgt tccatatgat tttggtatct cttaccgctg
     3781 ttaccactca cttttttttt gaaaagtata tctctgatga gtacatatgg tcaaatacaa
     3841 tttcttctgt tcaaagagct gatattttaa acttatttca gtgttacaga agtgtcacac
     3901 ttattttata agtctctcaa tgctgagacc aaattacatt gcaaagacta atacagagtt
     3961 tcatattgca ccatagaaaa taatctaaat tattgcaaat aggagattct gattactaaa
     4021 tattattagt tatcgatgtg cccttgagaa tttaaaaaaa aaatcaaaat agagtttgaa
     4081 gttttcttct tgtccaaagt tattatgtgt aagtttcata gcagtttact tccttttttt
     4141 ttgcttacag tttcaaaaac aatgagtgag ctttcagttt tctatacaaa tataaatagt
     4201 accatggata tccttagagg ttgcaatatt caccttttag aattttattt aaacttctcc
     4261 cagtattttt attctctcac agatggtaat tatttgcaac attcatgagt attttacctc
     4321 cttttactat cctgaaaact atttccagta aatggagaaa tggtcccaaa gcagaaggag
     4381 aattgagagg ggcaaactgg cctgctttaa ttcacaagct ggataactgg caacccaaag
     4441 ttttccattt gaagttttga cctttgcatg gacaaattca agaaaagaga aatcctgcct
     4501 tttaaacatt ggtttatggt ggtgtatttt tgcttcagca acaataaaac ttataagatg
     4561 tgttattgga tcaagttcag tttttctgct gagattttta agaacaaggt tgaactttca
     4621 atgtctaaaa agcattaatt gtctggatcc atatgaacca agataatgac cacaaataac
     4681 agtcgtgcga ccaaaaattg ttaaattaag actaattgca cactttgaga ttcttgccct
     4741 tttttggtgc ttttttgcct tgttatgggt attgaaggaa aactattcag gtgaaacatt
     4801 ctgcattaac tgggctgtat tacctaaaaa gagctacata aagtttttat tttatcccca
     4861 cctgctaatt tgaaaactat tggtaaagtc atcattcagt acactaatat tttctaaatt
     4921 agtaagaagt cttaccttac aaaaataatc agataatgct gatatttctc tttcaaaggc
     4981 taacaatgac agttcctggt cctgagctgg ttggttcata caataactaa tgtacatgtt
     5041 actacattga atattgatag atttgctgaa gattctgggt ttgagggtta gcttgaaagc
     5101 aatacatttg ctaccatgaa tcatgactca aattatcccc gtgtgtttta ctacctgtat
     5161 atgaatgcaa atgttgttac agaaaatatg cttgaaatgt caacacaatg tgcaattagt
     5221 attgcattgt catgcttcag catgtgatat ctgtatggtg aagttatttc aattactcag
     5281 atatgttact ataataaaaa atgtttaata taagaaagct acatatgtca tcaaatggtt
     5341 atttctgtac tccccctccc ccccacacac tgtttttagt agtagaagag actggctctc
     5401 aattaagctt tcagcgtgat gaaatatatt ttcacagtaa ttttcttctg ctgtagagtc
     5461 agcagtagaa ctgtggggat aactttacct gctattaaag tcaggttgag taaacagagt
     5521 tggtgtcaat tcctctctta gttagctgga aggtagactg gtctaaaatt tagaaatgac
     5581 atttttatat ctttctagca tcattataac aatagtatta ctaatctgaa tagaaatgtg
     5641 tcagcatctc agctatgaca tttttttcag gaatttataa ttttatcact attaaaatat
     5701 actaaacctc aataagtagc atatcatagt cttattgcca ctattaccat tgtctataag
     5761 atgattgtat ataaagaaat tgaatatttt tcctttaaag aaaggaagct ctttggataa
     5821 aaatctatca tgataggaac tttaatgcat gtatacctca gcaacaagtg atatggatat
     5881 tgacttttta aatgtatttt taaagatttg ttattttata aagtaaaaat attctataaa
     5941 atctttaaac tttgaatttt tttcagtgac agataaagat gagaccaatg tgggtagttt
     6001 agtatctccc tattatatca aataatttgt aagataaata tacatatagt aaatgattga
     6061 aaatctttta aaactataaa taaatcattc tgaaataatc tcaagtgtta gaaaacttct
     6121 tgtagtgcct taaaataaga ttaacattta gctcttttgt agaaagtaag ataatagatc
     6181 tttaatttgc agagagtagt ctcttagtga ttattcatgt acatatagaa tatagtgacg
     6241 aaaatgtcca tcaccacggt caagtaaatg tggaaaacat tggatgtata agatacatct
     6301 ttgtatcttt gtatgtatct ttcaggacct accaagagtc tttagtattc taagatgctt
     6361 tgagagtccc cagcgaggga ctgggacata cactagttcc taaactaatt tcactatggt
     6421 atcttattga aatgcatctc ccaggactag tcttctattg actaaggttt ggaaaacacc
     6481 taactacacc aagtcattca ctaataaagg aatcaaggta tttatttatt taatataaac
     6541 tgtggtataa ttatgaacac tgacaaatct agtgcaagaa tttacttgcg cttgttgctt
     6601 gagaatttgg tcatttccag aggaatattt gaacaagtgt ttcagcagga atgtcttgac
     6661 ccaagaagga tgactgcaga taagtagtct taatggtaaa catgagttat attagatact
     6721 tgaaacataa tcatgatatg caaagtaata taaaatgctt aagatgtggt cagaatgtgg
     6781 ttcaaaccct tatgaaaaac tattaatgat gtattgggtc taacatgata aaagtttgtc
     6841 tttaatgaga gtctaacgtc acccatcagc agatgataag agctttgtat aacagacaat
     6901 atatctagat gcccttgctg gccatctgaa agactcttct tatataaaca aaaaggcctg
     6961 tttgtggctg ataagtttcc ttcagagctg gaatttatta aaaatttgtt gtatttgtgg
     7021 gagacaaaat ctactgagcc aatttatttt ctgtggttaa gttttcctta agcagtatgt
     7081 tagacacttt gggagccttc agaagtttcg tctttcattt ctatttgtcc ttatgaaata
     7141 ttgccaaatt agtctccctc tttaaaaata taggaaaaat actgctattc aatatattta
     7201 gggagttata cactgaatgg tactataatg gcctaaactg aactatttta tatagttatc
     7261 aaaaatacta aaattttggc ttggaaagta gtgtctagac ttttgtacag aaatgacacc
     7321 atttttataa ctttatagca aggcagcctt caatatttta tatagaagta gaaatataca
     7381 gtgaaggtaa gcaaattcca aattttgtcc taagaacagg tgcaagcgga cataaaccac
     7441 ataaattggc actgttgtaa caaaaacctt caagaataat aacaaaacta tgtaaattta
     7501 gccaagctct gttctattac agatgctgct gttgctagtg atagaataag ataacttttt
     7561 aaaggtcaag aaacataata aaatttattt tttaaaatgg caatacagta tgctgttagc
     7621 agtaaaaatg ttaatatatt gccatggtta taatatatct gattttgtgg aaaatatatg
     7681 acagtgtgtg tgaatacaga gtatataaac attaatgcaa tctaagaaaa tacaatttca
     7741 acatattacc tcattttcat taaaatgatg aaaatgtgaa ttcagaaaat cacatagtcc
     7801 ttagtctaaa aataggtaga tcatcaaacc ctaatatcat ttaaactcaa attggtattt
     7861 gttcagtaaa tgttctacat cataatgtga tgtacaaagg aaaactcaac atttgtggaa
     7921 gaaaatgaag ggattatttt taagaaaagc aactttagct aatcccgtta tgtttctgac
     7981 tcttccaaac tgaagcaaca gtcttgttgt catgaaacat ttactgcaaa taaagaataa
     8041 gtacattctt cagaagttag cttcttactt atatttgtgt ttttgaattt ttttcctgac
     8101 catttctaat tttctgcatt tcatctcctc tagttccact tattaccatg tgaagcattc
     8161 ccacattatt ctctcttaaa aatactaaat ggtcattgcc tattttggtt gttttaacta
     8221 aaacattgag ttcttataaa tgtatacaaa gtgcaaaggc agattccact tctgcattat
     8281 tgtctacact tttggattaa tacttttttc agcattttgg tccacatagt atccattttt
     8341 ttctgagcaa caggcaaatg gtttcacttc tcttaagttg tgtggtttag aatctcctga
     8401 gaatgtacat cctgataaac caggagaagc tcacttctag agctgaaatg ttctaatatc
     8461 gatcttgctt cttatacgtg ctagaaattc ccacaccagt ttgcacatct gacctaggta
     8521 cttaattatt aaatagggga ttacagattt ctagagaact ccatggcacc ataacacctt
     8581 gctaagtaat cccaaggctt tgggaaaata aaaggaagtt ctttataaag gttggagtct
     8641 gctttattac cttccttagc ttattatttc tcatctacta tcttttttac ttttcttatg
     8701 taatagaaca tccaatggaa taggaagcag atgatgtgtg ttccaatcct ggttctgcta
     8761 tgatctacct gagtgggaca gggtcttcgt ttcttaaaaa taaaaaccaa ctttgtctat
     8821 ataggaagca ctagtctctg tagtaaagta gtgtcatttc cccattgtat ataaaaaaaa
     8881 atctcaccga cgatcagaag actcttcttt gtgattctga gtctgtcggg tatcatcagg
     8941 atgtcaggat ctgtaagaat gagacgaagg aaacttgtta ccaggtcgtg ctcatcttca
     9001 cccattctat aaaaacaccg tacatatacc cactaaattc agtctcaaga tcacaagtaa
     9061 gttaaaagtt atttacacag ggcttccctg gtggtgcagt ggttgagagt ccgcttgccg
     9121 atgcagggga cacgggttcg tgccccagtc cgggaggatc ccacatgcag cagagcggct
     9181 gggtccgtga gccatggcca ctgagcctgc gtgtccggag cctgtactcc gcaacgggag
     9241 aggccacaac agtgagaggc ccgcg
//
LOCUS       XM_032606765            7773 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulin tyrosine ligase like 7 (TTLL7),
            transcript variant X5, mRNA.
ACCESSION   XM_032606765
VERSION     XM_032606765.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7773
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7773
                     /gene="TTLL7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     49% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740797"
     CDS             303..2960
                     /gene="TTLL7"
                     /codon_start=1
                     /product="tubulin polyglutamylase TTLL7 isoform X3"
                     /protein_id="XP_032462656.1"
                     /db_xref="GeneID:116740797"
                     /translation="MPSLPQERVIQGPSPLDLNTELPYQSTMKRKVRKKKKKGTITAN
                     VAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKIAELQNYQRINHFPGMG
                     EICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVK
                     PANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKI
                     FLYHDGLVRMGTEKYIPPNETNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIRW
                     FTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLG
                     FDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRRNLAKQ
                     KAEAQRRLYGQNSIKRLLPGSSDSEQQRHQLERRKEELKERLAQVRKQISKEEHENRH
                     MGNYRRIYPPEDKTLLEKYENLLAVAFQTFLSGRAASFQREMNNPLKRMKEEDILDLL
                     EQCEIDDEKLMGKTAKSRGPKPLSSMPESTEITKRQKYYSSDSSYGSSSSSSESEENE
                     KEEYQNKKREKQVTYNLKQSNHYRLIQPSSSIRRSVSCPRSISSQSPSSADNRPFSAQ
                     QVISSSRSASGSRSHSLNRASSYMGHPPQRNVSSSTNSLMSESLRQLRPKEQEDDLTS
                     QTLFVLKDMKIRFPGKSDAESLLLIEDMIGNWKYHKTKVASYWLIKLDSVKQRKVLDI
                     VKTSVRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSHGQGLWNCFCDSGSSWESIFS
                     KSPEVVTPLQLQCCQRLVELCKQCLLVVYKYATDSRGSLSGIGTNWGNSRYLLPGSTQ
                     FFMRTPTYNLKYSSPGMARSNVLFTSRSI"
     misc_feature    573..1430
                     /gene="TTLL7"
                     /note="Tubulin-tyrosine ligase family; Region: TTL;
                     pfam03133"
                     /db_xref="CDD:397308"
     misc_feature    1440..1643
                     /gene="TTLL7"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cl21462"
                     /db_xref="CDD:473870"
     misc_feature    1452..1643
                     /gene="TTLL7"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269866"
     misc_feature    order(1461..1466,1491..1499,1503..1514,1515..1517,
                     1521..1529)
                     /gene="TTLL7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269866"
     misc_feature    order(1524..1526,1557..1562,1569..1574,1578..1583,
                     1590..1595,1599..1604,1611..1616,1620..1625,1632..1637,
                     1641..1643)
                     /gene="TTLL7"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269866"
ORIGIN      
        1 gccgatattc agcgcgggct gccgggcccg gggcagctgc ggtgggaagc cgaggtgcgc
       61 gggagccgtg gagggaccgt ccgcagcccg gaggcgagga cccgggctgg gatttcctta
      121 ccccggtccc ttcttatctc ataatgtcaa tgtcctgaaa tctgaggatt ccaccaagat
      181 aatatgatag gaactttcag tgatttggag ccgtatccta cttagactaa tgcaggcctt
      241 ccaggtttcc taagagcttg tacagcagcg cacactgctg ttgttaatcg gcacaggcaa
      301 gaatgccatc tttgcctcaa gaaagagtta ttcagggacc ctctcccctg gatctgaata
      361 cagaattgcc ttatcagagc acgatgaaaa ggaaagtcag aaagaagaaa aagaagggaa
      421 ccattacagc aaatgttgct gggacaaagt ttgaaattgt tcgtttagta atagatgaaa
      481 tgggatttat gaaaacgcca gatgaggatg aaacaagtaa ccttatatgg tgtgattcag
      541 ctgttcagca ggagaagatt gcagagctgc aaaattacca gaggatcaac cattttccag
      601 gaatggggga gatctgtagg aaggatttcc tagcaagaaa tatgaccaaa atgatcaagt
      661 cccggcctct ggattatacc tttgttcctc gaacatggat cttccctgct gagtatacac
      721 aatttcagaa ttatatgaaa gaattaaaga aaaaaagaaa gcagaagact tttatagtaa
      781 aaccagctaa tggtgcaatg ggtcatggga tttctttgat aagaaatggt gacaaacttc
      841 catctcagga tcatttgatt gttcaagaat acattgaaaa acctttccta atggaaggtt
      901 acaagtttga tttacgaatt tatattctgg taacatcgtg tgatccacta aaaatatttc
      961 tctaccacga tggacttgtg cgaatgggaa cagagaagta cattccacct aatgagacca
     1021 atttgaccca gttatacatg catctgacaa actactctgt gaacaagcac aatgagcatt
     1081 ttgaaaggga tgaaactgaa aacaaaggca gcaaacgttc catcagatgg tttacagaat
     1141 ttctacaagc aaatcaacat gatgttgcta agttttggag tgatatttca gaattggtgg
     1201 taaagactct gattgtagca gaacctcatg tcctgcatgc atatcgaatg tgcagacctg
     1261 gtcaacctcc aggaagtgaa agtgtctgct tcgaagtcct gggatttgat attttgttgg
     1321 atagaaaact aaagccatgg cttctagaga tcaatcgagc tccaagcttt ggaactgatc
     1381 agaaaataga ctatgatgta aaaaggggag tgctgctaaa tgcactgaag ctactaaata
     1441 tcaggaccag tgataaaagg agaaacttgg ctaaacaaaa agctgaggct caaaggagac
     1501 tttatggtca aaattcaatc aaaaggcttt taccgggttc ctcagactca gaacagcaaa
     1561 gacatcagtt ggagaggcgg aaagaagagt tgaaggagag acttgctcag gtacggaagc
     1621 agatctcgaa agaagaacat gaaaatcgac acatggggaa ttacaggcga atttatcctc
     1681 ctgaagataa aacactactt gaaaagtatg aaaatttgtt ggctgttgcc tttcagacct
     1741 tcctttcagg aagagcagct tcattccagc gagagatgaa taatcctttg aaaaggatga
     1801 aggaggaaga tattttggat cttctggagc aatgtgaaat tgatgacgaa aagttgatgg
     1861 gcaaaactgc caagtctcga ggaccaaagc ctctgtcttc catgcccgag agtaccgaga
     1921 taacaaaaag acagaagtac tacagcagtg acagcagcta tggtagtagc agcagctctt
     1981 cagaatcaga agaaaatgaa aaagaagagt accaaaataa gaaaagagaa aagcaagtta
     2041 catataatct taaacagtcc aaccactaca gattaatcca accatccagc tccataaggc
     2101 gttcagtcag ttgccctcgg tccatctctt ctcaatcacc atccagtgca gacaaccgcc
     2161 ccttttctgc tcaacaagtg atatcatcat cccggtcagc ttcagggtct cggtcacatt
     2221 ctttaaaccg tgcttcctcc tacatggggc atccgcctca aagaaatgtt tccagctcta
     2281 ccaactctct gatgagtgag tctttgcggc aactgagacc aaaagaacaa gaagatgatc
     2341 taacaagtca gaccttattt gttctcaagg acatgaagat ccggtttcca ggaaaatcag
     2401 atgcagaatc attacttctg atagaagata tgattggtaa ctggaagtat cataaaacaa
     2461 aagtggcttc atattggctc ataaaattgg actctgtaaa acaacgaaaa gttttggaca
     2521 tagtaaaaac aagtgtccgt acagttcttc cacgcatctg gaaggtacct gatgttgagg
     2581 aagtaaattt atatcggatt ttcaaccgag tttttaatcg cttactctgg agtcatggac
     2641 aaggactgtg gaactgtttc tgtgattcag gatcctcttg ggagagtatt ttcagtaaaa
     2701 gcccggaggt ggtgactcct ttgcagctcc aatgttgcca gcgcctggtc gagctttgta
     2761 aacagtgcct gctagtggtt tacaaatatg caactgactc aagaggatca ctctcaggca
     2821 ttggtaccaa ttggggtaat tccaggtatt tactaccagg aagtacacaa ttcttcatga
     2881 gaacaccaac ctacaacttg aaatacagtt cacctggaat ggctcgctcc aatgttttgt
     2941 ttacatcccg ttccatttga agttttgacc tttgcatgga caaattcaag aaaagagaaa
     3001 tcctgccttt taaacattgg tttatggtgg tgtatttttg cttcagcaac aataaaactt
     3061 ataagatgtg ttattggatc aagttcagtt tttctgctga gatttttaag aacaaggttg
     3121 aactttcaat gtctaaaaag cattaattgt ctggatccat atgaaccaag ataatgacca
     3181 caaataacag tcgtgcgacc aaaaattgtt aaattaagac taattgcaca ctttgagatt
     3241 cttgcccttt tttggtgctt ttttgccttg ttatgggtat tgaaggaaaa ctattcaggt
     3301 gaaacattct gcattaactg ggctgtatta cctaaaaaga gctacataaa gtttttattt
     3361 tatccccacc tgctaatttg aaaactattg gtaaagtcat cattcagtac actaatattt
     3421 tctaaattag taagaagtct taccttacaa aaataatcag ataatgctga tatttctctt
     3481 tcaaaggcta acaatgacag ttcctggtcc tgagctggtt ggttcataca ataactaatg
     3541 tacatgttac tacattgaat attgatagat ttgctgaaga ttctgggttt gagggttagc
     3601 ttgaaagcaa tacatttgct accatgaatc atgactcaaa ttatccccgt gtgttttact
     3661 acctgtatat gaatgcaaat gttgttacag aaaatatgct tgaaatgtca acacaatgtg
     3721 caattagtat tgcattgtca tgcttcagca tgtgatatct gtatggtgaa gttatttcaa
     3781 ttactcagat atgttactat aataaaaaat gtttaatata agaaagctac atatgtcatc
     3841 aaatggttat ttctgtactc cccctccccc ccacacactg tttttagtag tagaagagac
     3901 tggctctcaa ttaagctttc agcgtgatga aatatatttt cacagtaatt ttcttctgct
     3961 gtagagtcag cagtagaact gtggggataa ctttacctgc tattaaagtc aggttgagta
     4021 aacagagttg gtgtcaattc ctctcttagt tagctggaag gtagactggt ctaaaattta
     4081 gaaatgacat ttttatatct ttctagcatc attataacaa tagtattact aatctgaata
     4141 gaaatgtgtc agcatctcag ctatgacatt tttttcagga atttataatt ttatcactat
     4201 taaaatatac taaacctcaa taagtagcat atcatagtct tattgccact attaccattg
     4261 tctataagat gattgtatat aaagaaattg aatatttttc ctttaaagaa aggaagctct
     4321 ttggataaaa atctatcatg ataggaactt taatgcatgt atacctcagc aacaagtgat
     4381 atggatattg actttttaaa tgtattttta aagatttgtt attttataaa gtaaaaatat
     4441 tctataaaat ctttaaactt tgaatttttt tcagtgacag ataaagatga gaccaatgtg
     4501 ggtagtttag tatctcccta ttatatcaaa taatttgtaa gataaatata catatagtaa
     4561 atgattgaaa atcttttaaa actataaata aatcattctg aaataatctc aagtgttaga
     4621 aaacttcttg tagtgcctta aaataagatt aacatttagc tcttttgtag aaagtaagat
     4681 aatagatctt taatttgcag agagtagtct cttagtgatt attcatgtac atatagaata
     4741 tagtgacgaa aatgtccatc accacggtca agtaaatgtg gaaaacattg gatgtataag
     4801 atacatcttt gtatctttgt atgtatcttt caggacctac caagagtctt tagtattcta
     4861 agatgctttg agagtcccca gcgagggact gggacataca ctagttccta aactaatttc
     4921 actatggtat cttattgaaa tgcatctccc aggactagtc ttctattgac taaggtttgg
     4981 aaaacaccta actacaccaa gtcattcact aataaaggaa tcaaggtatt tatttattta
     5041 atataaactg tggtataatt atgaacactg acaaatctag tgcaagaatt tacttgcgct
     5101 tgttgcttga gaatttggtc atttccagag gaatatttga acaagtgttt cagcaggaat
     5161 gtcttgaccc aagaaggatg actgcagata agtagtctta atggtaaaca tgagttatat
     5221 tagatacttg aaacataatc atgatatgca aagtaatata aaatgcttaa gatgtggtca
     5281 gaatgtggtt caaaccctta tgaaaaacta ttaatgatgt attgggtcta acatgataaa
     5341 agtttgtctt taatgagagt ctaacgtcac ccatcagcag atgataagag ctttgtataa
     5401 cagacaatat atctagatgc ccttgctggc catctgaaag actcttctta tataaacaaa
     5461 aaggcctgtt tgtggctgat aagtttcctt cagagctgga atttattaaa aatttgttgt
     5521 atttgtggga gacaaaatct actgagccaa tttattttct gtggttaagt tttccttaag
     5581 cagtatgtta gacactttgg gagccttcag aagtttcgtc tttcatttct atttgtcctt
     5641 atgaaatatt gccaaattag tctccctctt taaaaatata ggaaaaatac tgctattcaa
     5701 tatatttagg gagttataca ctgaatggta ctataatggc ctaaactgaa ctattttata
     5761 tagttatcaa aaatactaaa attttggctt ggaaagtagt gtctagactt ttgtacagaa
     5821 atgacaccat ttttataact ttatagcaag gcagccttca atattttata tagaagtaga
     5881 aatatacagt gaaggtaagc aaattccaaa ttttgtccta agaacaggtg caagcggaca
     5941 taaaccacat aaattggcac tgttgtaaca aaaaccttca agaataataa caaaactatg
     6001 taaatttagc caagctctgt tctattacag atgctgctgt tgctagtgat agaataagat
     6061 aactttttaa aggtcaagaa acataataaa atttattttt taaaatggca atacagtatg
     6121 ctgttagcag taaaaatgtt aatatattgc catggttata atatatctga ttttgtggaa
     6181 aatatatgac agtgtgtgtg aatacagagt atataaacat taatgcaatc taagaaaata
     6241 caatttcaac atattacctc attttcatta aaatgatgaa aatgtgaatt cagaaaatca
     6301 catagtcctt agtctaaaaa taggtagatc atcaaaccct aatatcattt aaactcaaat
     6361 tggtatttgt tcagtaaatg ttctacatca taatgtgatg tacaaaggaa aactcaacat
     6421 ttgtggaaga aaatgaaggg attattttta agaaaagcaa ctttagctaa tcccgttatg
     6481 tttctgactc ttccaaactg aagcaacagt cttgttgtca tgaaacattt actgcaaata
     6541 aagaataagt acattcttca gaagttagct tcttacttat atttgtgttt ttgaattttt
     6601 ttcctgacca tttctaattt tctgcatttc atctcctcta gttccactta ttaccatgtg
     6661 aagcattccc acattattct ctcttaaaaa tactaaatgg tcattgccta ttttggttgt
     6721 tttaactaaa acattgagtt cttataaatg tatacaaagt gcaaaggcag attccacttc
     6781 tgcattattg tctacacttt tggattaata cttttttcag cattttggtc cacatagtat
     6841 ccattttttt ctgagcaaca ggcaaatggt ttcacttctc ttaagttgtg tggtttagaa
     6901 tctcctgaga atgtacatcc tgataaacca ggagaagctc acttctagag ctgaaatgtt
     6961 ctaatatcga tcttgcttct tatacgtgct agaaattccc acaccagttt gcacatctga
     7021 cctaggtact taattattaa ataggggatt acagatttct agagaactcc atggcaccat
     7081 aacaccttgc taagtaatcc caaggctttg ggaaaataaa aggaagttct ttataaaggt
     7141 tggagtctgc tttattacct tccttagctt attatttctc atctactatc ttttttactt
     7201 ttcttatgta atagaacatc caatggaata ggaagcagat gatgtgtgtt ccaatcctgg
     7261 ttctgctatg atctacctga gtgggacagg gtcttcgttt cttaaaaata aaaaccaact
     7321 ttgtctatat aggaagcact agtctctgta gtaaagtagt gtcatttccc cattgtatat
     7381 aaaaaaaaat ctcaccgacg atcagaagac tcttctttgt gattctgagt ctgtcgggta
     7441 tcatcaggat gtcaggatct gtaagaatga gacgaaggaa acttgttacc aggtcgtgct
     7501 catcttcacc cattctataa aaacaccgta catataccca ctaaattcag tctcaagatc
     7561 acaagtaagt taaaagttat ttacacaggg cttccctggt ggtgcagtgg ttgagagtcc
     7621 gcttgccgat gcaggggaca cgggttcgtg ccccagtccg ggaggatccc acatgcagca
     7681 gagcggctgg gtccgtgagc catggccact gagcctgcgt gtccggagcc tgtactccgc
     7741 aacgggagag gccacaacag tgagaggccc gcg
//
LOCUS       XM_032606778            1116 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAB29, member RAS oncogene family
            (RAB29), transcript variant X1, mRNA.
ACCESSION   XM_032606778
VERSION     XM_032606778.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1116
                     /gene="RAB29"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 15
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740812"
     CDS             179..790
                     /gene="RAB29"
                     /codon_start=1
                     /product="ras-related protein Rab-7L1 isoform X1"
                     /protein_id="XP_032462669.1"
                     /db_xref="GeneID:116740812"
                     /translation="MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDF
                     ALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRW
                     KQDLDSKLTLPNGEPVPCLLLANKCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENK
                     NINEAMRVLIEKMMSNSREDMSLSTQGNYINLQTKPSSSWACC"
     misc_feature    200..787
                     /gene="RAB29"
                     /note="Rab GTPase families 18 (Rab18) and 32 (Rab32);
                     Region: Rab32_Rab38; cd04107"
                     /db_xref="CDD:206692"
     misc_feature    200..205
                     /gene="RAB29"
                     /note="Rab subfamily motif 1 (RabSF1); other site"
                     /db_xref="CDD:206692"
     misc_feature    218..241
                     /gene="RAB29"
                     /note="G1 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(224..244,272..277,290..295,374..376,551..556,
                     560..562,641..649)
                     /gene="RAB29"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206692"
     misc_feature    order(242..277,287..292)
                     /gene="RAB29"
                     /note="Rab subfamily motif 2 (RabSF2); other site"
                     /db_xref="CDD:206692"
     misc_feature    order(272..274,287..313)
                     /gene="RAB29"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(287..289,299..322,344..346,350..352)
                     /gene="RAB29"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206692"
     misc_feature    293..295
                     /gene="RAB29"
                     /note="G2 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(296..298,302..310,356..358,362..364,383..388,
                     395..397,407..409,413..424,695..697)
                     /gene="RAB29"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206692"
     misc_feature    order(296..301,305..307,362..367,386..388,392..394,
                     398..406)
                     /gene="RAB29"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206692"
     misc_feature    296..310
                     /gene="RAB29"
                     /note="Rab family motif 1 (RabF1); other site"
                     /db_xref="CDD:206692"
     misc_feature    350..364
                     /gene="RAB29"
                     /note="Rab family motif 2 (RabF2); other site"
                     /db_xref="CDD:206692"
     misc_feature    365..376
                     /gene="RAB29"
                     /note="G3 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(374..376,380..412)
                     /gene="RAB29"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206692"
     misc_feature    383..400
                     /gene="RAB29"
                     /note="Rab family motif 3 (RabF3); other site"
                     /db_xref="CDD:206692"
     misc_feature    407..421
                     /gene="RAB29"
                     /note="Rab family motif 4 (RabF4); other site"
                     /db_xref="CDD:206692"
     misc_feature    434..451
                     /gene="RAB29"
                     /note="Rab family motif 5 (RabF5); other site"
                     /db_xref="CDD:206692"
     misc_feature    530..544
                     /gene="RAB29"
                     /note="Rab subfamily motif 3 (RabSF3); other site"
                     /db_xref="CDD:206692"
     misc_feature    551..562
                     /gene="RAB29"
                     /note="G4 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    641..649
                     /gene="RAB29"
                     /note="G5 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    689..697
                     /gene="RAB29"
                     /note="Rab subfamily motif 4 (RabSF4); other site"
                     /db_xref="CDD:206692"
     misc_feature    779..787
                     /gene="RAB29"
                     /note="putative lipid modification site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:206692"
ORIGIN      
        1 ctgcacgtga cgcacgcgga ggaaggcgag agggactgcg ccgcctggtg tgagaagccc
       61 caacgggcgg ttcggcggga atgccaaact tcaatttgag cggggtcgcg agccaaaggg
      121 tttaaaataa gttactcccc ccacttcccg ccgccgtata acgtccatcc cgctagccat
      181 gggcagccgc gatcacctgt tcaaagtgct ggtggtgggg gacgccgcag tgggcaagac
      241 gtccttggtg cagcgatatt cccaggacag cttcagcaaa cactacaagt ccacggtggg
      301 agtggatttt gctctgaagg ttctccagtg gtctgactca gagatggtgc gcctccagct
      361 gtgggatatt gcagggcagg agcgcttcac ctctatgacc cgactttact atcgggatgc
      421 ctctgcctgt gttattatgt ttgatgttac caacgccact accttcagca acagccaaag
      481 atggaaacag gacctggaca gcaagctcac actgcctaat ggagagccgg tgccctgcct
      541 gctcttagcc aacaagtgtg atctgtcccc ttgggcagtg agccgagacc aggttgaccg
      601 gttcagtaaa gagaatggtt tcacaggttg gacagaaaca tcagtcaagg agaacaaaaa
      661 tattaatgag gccatgagag tcctcattga gaagatgatg agcaattcca gagaagatat
      721 gtctttgtcc acccaaggga actacatcaa cctgcagacc aagccctctt ccagctgggc
      781 ctgctgctag tagcgtttgg cttgttttcc ctcccagttc taggagatcc ttctcttccc
      841 tttggttgcc cacccagcag ttttactaag tacatttgaa ctgtctgctg ctgacggtcc
      901 agtaaggagg gccatcatca ctaagaaaag acacgtggga cccatgggca tttctgctgc
      961 ctctgctgca agttgcctgt cacttgctgc tggctcacgg ggcccagtca gtgccttctg
     1021 tccaaaagag atcatctcat ctctcaattt gtgatctggg attttgtggg aaggattaga
     1081 agtcagcatc tgtgttttac ggatcataat tctcac
//
LOCUS       XM_032606787            1081 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAB29, member RAS oncogene family
            (RAB29), transcript variant X2, mRNA.
ACCESSION   XM_032606787
VERSION     XM_032606787.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1081
                     /gene="RAB29"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740812"
     CDS             144..755
                     /gene="RAB29"
                     /codon_start=1
                     /product="ras-related protein Rab-7L1 isoform X1"
                     /protein_id="XP_032462678.1"
                     /db_xref="GeneID:116740812"
                     /translation="MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDF
                     ALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRW
                     KQDLDSKLTLPNGEPVPCLLLANKCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENK
                     NINEAMRVLIEKMMSNSREDMSLSTQGNYINLQTKPSSSWACC"
     misc_feature    165..752
                     /gene="RAB29"
                     /note="Rab GTPase families 18 (Rab18) and 32 (Rab32);
                     Region: Rab32_Rab38; cd04107"
                     /db_xref="CDD:206692"
     misc_feature    165..170
                     /gene="RAB29"
                     /note="Rab subfamily motif 1 (RabSF1); other site"
                     /db_xref="CDD:206692"
     misc_feature    183..206
                     /gene="RAB29"
                     /note="G1 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(189..209,237..242,255..260,339..341,516..521,
                     525..527,606..614)
                     /gene="RAB29"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206692"
     misc_feature    order(207..242,252..257)
                     /gene="RAB29"
                     /note="Rab subfamily motif 2 (RabSF2); other site"
                     /db_xref="CDD:206692"
     misc_feature    order(237..239,252..278)
                     /gene="RAB29"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(252..254,264..287,309..311,315..317)
                     /gene="RAB29"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206692"
     misc_feature    258..260
                     /gene="RAB29"
                     /note="G2 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(261..263,267..275,321..323,327..329,348..353,
                     360..362,372..374,378..389,660..662)
                     /gene="RAB29"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206692"
     misc_feature    order(261..266,270..272,327..332,351..353,357..359,
                     363..371)
                     /gene="RAB29"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206692"
     misc_feature    261..275
                     /gene="RAB29"
                     /note="Rab family motif 1 (RabF1); other site"
                     /db_xref="CDD:206692"
     misc_feature    315..329
                     /gene="RAB29"
                     /note="Rab family motif 2 (RabF2); other site"
                     /db_xref="CDD:206692"
     misc_feature    330..341
                     /gene="RAB29"
                     /note="G3 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(339..341,345..377)
                     /gene="RAB29"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206692"
     misc_feature    348..365
                     /gene="RAB29"
                     /note="Rab family motif 3 (RabF3); other site"
                     /db_xref="CDD:206692"
     misc_feature    372..386
                     /gene="RAB29"
                     /note="Rab family motif 4 (RabF4); other site"
                     /db_xref="CDD:206692"
     misc_feature    399..416
                     /gene="RAB29"
                     /note="Rab family motif 5 (RabF5); other site"
                     /db_xref="CDD:206692"
     misc_feature    495..509
                     /gene="RAB29"
                     /note="Rab subfamily motif 3 (RabSF3); other site"
                     /db_xref="CDD:206692"
     misc_feature    516..527
                     /gene="RAB29"
                     /note="G4 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    606..614
                     /gene="RAB29"
                     /note="G5 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    654..662
                     /gene="RAB29"
                     /note="Rab subfamily motif 4 (RabSF4); other site"
                     /db_xref="CDD:206692"
     misc_feature    744..752
                     /gene="RAB29"
                     /note="putative lipid modification site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:206692"
ORIGIN      
        1 agggactgcg ccgcctgaga agccccaacg ggcggttcgg cgggaatgcc aaacttcaat
       61 ttgagcgggg tcgcgagcca aagggtttaa aataagttac tccccccact tcccgccgcc
      121 gtataacgtc catcccgcta gccatgggca gccgcgatca cctgttcaaa gtgctggtgg
      181 tgggggacgc cgcagtgggc aagacgtcct tggtgcagcg atattcccag gacagcttca
      241 gcaaacacta caagtccacg gtgggagtgg attttgctct gaaggttctc cagtggtctg
      301 actcagagat ggtgcgcctc cagctgtggg atattgcagg gcaggagcgc ttcacctcta
      361 tgacccgact ttactatcgg gatgcctctg cctgtgttat tatgtttgat gttaccaacg
      421 ccactacctt cagcaacagc caaagatgga aacaggacct ggacagcaag ctcacactgc
      481 ctaatggaga gccggtgccc tgcctgctct tagccaacaa gtgtgatctg tccccttggg
      541 cagtgagccg agaccaggtt gaccggttca gtaaagagaa tggtttcaca ggttggacag
      601 aaacatcagt caaggagaac aaaaatatta atgaggccat gagagtcctc attgagaaga
      661 tgatgagcaa ttccagagaa gatatgtctt tgtccaccca agggaactac atcaacctgc
      721 agaccaagcc ctcttccagc tgggcctgct gctagtagcg tttggcttgt tttccctccc
      781 agttctagga gatccttctc ttccctttgg ttgcccaccc agcagtttta ctaagtacat
      841 ttgaactgtc tgctgctgac ggtccagtaa ggagggccat catcactaag aaaagacacg
      901 tgggacccat gggcatttct gctgcctctg ctgcaagttg cctgtcactt gctgctggct
      961 cacggggccc agtcagtgcc ttctgtccaa aagagatcat ctcatctctc aatttgtgat
     1021 ctgggatttt gtgggaagga ttagaagtca gcatctgtgt tttacggatc ataattctca
     1081 c
//
LOCUS       XM_032606796            2550 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAB29, member RAS oncogene family
            (RAB29), transcript variant X3, mRNA.
ACCESSION   XM_032606796
VERSION     XM_032606796.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2550
                     /gene="RAB29"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740812"
     CDS             492..1031
                     /gene="RAB29"
                     /codon_start=1
                     /product="ras-related protein Rab-7L1 isoform X2"
                     /protein_id="XP_032462687.1"
                     /db_xref="GeneID:116740812"
                     /translation="MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGGQE
                     RFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANK
                     CDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSREDMSLS
                     TQGNYINLQTKPSSSWACC"
     misc_feature    513..1028
                     /gene="RAB29"
                     /note="Rab GTPase families 18 (Rab18) and 32 (Rab32);
                     Region: Rab32_Rab38; cd04107"
                     /db_xref="CDD:206692"
     misc_feature    513..518
                     /gene="RAB29"
                     /note="Rab subfamily motif 1 (RabSF1); other site"
                     /db_xref="CDD:206692"
     misc_feature    531..554
                     /gene="RAB29"
                     /note="G1 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(537..557,585..590,603..608,615..617,792..797,
                     801..803,882..890)
                     /gene="RAB29"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206692"
     misc_feature    order(555..590,600..605)
                     /gene="RAB29"
                     /note="Rab subfamily motif 2 (RabSF2); other site"
                     /db_xref="CDD:206692"
     misc_feature    606..608
                     /gene="RAB29"
                     /note="G2 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    order(615..617,621..653)
                     /gene="RAB29"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206692"
     misc_feature    624..641
                     /gene="RAB29"
                     /note="Rab family motif 3 (RabF3); other site"
                     /db_xref="CDD:206692"
     misc_feature    648..662
                     /gene="RAB29"
                     /note="Rab family motif 4 (RabF4); other site"
                     /db_xref="CDD:206692"
     misc_feature    675..692
                     /gene="RAB29"
                     /note="Rab family motif 5 (RabF5); other site"
                     /db_xref="CDD:206692"
     misc_feature    771..785
                     /gene="RAB29"
                     /note="Rab subfamily motif 3 (RabSF3); other site"
                     /db_xref="CDD:206692"
     misc_feature    792..803
                     /gene="RAB29"
                     /note="G4 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    882..890
                     /gene="RAB29"
                     /note="G5 box; other site"
                     /db_xref="CDD:206692"
     misc_feature    930..938
                     /gene="RAB29"
                     /note="Rab subfamily motif 4 (RabSF4); other site"
                     /db_xref="CDD:206692"
     misc_feature    1020..1028
                     /gene="RAB29"
                     /note="putative lipid modification site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:206692"
ORIGIN      
        1 acgcggagga aggcgagagg gactgcgccg cctggtgtgg tatggggtcc ggggagtcta
       61 gttgtgaacg tctttttccc cagaatttgg tttttgcagt gcggggaggg cccccatctt
      121 ctccctgacc gtgaaatgag ctggcccggg ttcatatgcc cgccggagca gctccgggga
      181 agtcccggtg ggtgagacac cgtggtgcct catccagttt ctcggtagcc gggcggggag
      241 ggggagaagg tgagaacagc agggggctag cagcttgcgc cctgcgcccc acccaggctg
      301 cggccgcccg gggaggaagc gcgtataggt tgagtgcgaa gtttcctttt ttgctttctc
      361 gtcagagaag ccccaacggg cggttcggcg ggaatgccaa acttcaattt gagcggggtc
      421 gcgagccaaa gggtttaaaa taagttactc cccccacttc ccgccgccgt ataacgtcca
      481 tcccgctagc catgggcagc cgcgatcacc tgttcaaagt gctggtggtg ggggacgccg
      541 cagtgggcaa gacgtccttg gtgcagcgat attcccagga cagcttcagc aaacactaca
      601 agtccacggt gggagggcag gagcgcttca cctctatgac ccgactttac tatcgggatg
      661 cctctgcctg tgttattatg tttgatgtta ccaacgccac taccttcagc aacagccaaa
      721 gatggaaaca ggacctggac agcaagctca cactgcctaa tggagagccg gtgccctgcc
      781 tgctcttagc caacaagtgt gatctgtccc cttgggcagt gagccgagac caggttgacc
      841 ggttcagtaa agagaatggt ttcacaggtt ggacagaaac atcagtcaag gagaacaaaa
      901 atattaatga ggccatgaga gtcctcattg agaagatgat gagcaattcc agagaagata
      961 tgtctttgtc cacccaaggg aactacatca acctgcagac caagccctct tccagctggg
     1021 cctgctgcta gtagcgtttg gcttgttttc cctcccagtt ctaggagatc cttctcttcc
     1081 ctttggttgc ccacccagca gttttactaa gtacatttga actgtctgct gctgacggtc
     1141 cagtaaggag ggccatcatc actaagaaaa gacacgtggg acccatgggc atttctgctg
     1201 cctctgctgc aagttgcctg tcacttgctg ctggctcacg gggcccagtc agtgccttct
     1261 gtccaaaaga gatcatctca tctctcaatt tgtgatctgg gattttgtgg gaaggattag
     1321 aagtcagcat ctgtgtttta cggatcataa ttctcaccta cttttgagca tatttttcca
     1381 tttaatgtat attgatatct caatctgata ggacttcaga ctgcgaggaa aatgagatca
     1441 aaggtcattt cccaaattcc ttgttgatca ttgctttcag attctttctg tcttgggctt
     1501 tgaatttaaa cacctgattc tgagatacag gagaagtggg gctggatatc tatgggttta
     1561 gggctactgg aggtaaacca aaagtcacgt cactatttct ttaagcttct caagtcatat
     1621 tagctttctt ttgtcttggt tttaaaaata gttaaccttt taaatgatct gtctttggtt
     1681 agagcgattc tttcccccca aaattaattc tcactttaag gttttctagt gtctctctcc
     1741 cagtgggatg gggacagggt ttgcaggttg atgtcttgcc acgtaatgct gcaagtgaca
     1801 tcagttggcc gtggtaccct gaacaagtct attcctcaca gctctgggcg tctgaatgga
     1861 agaagagggt caggttaaca gaacaaaatc ctatggggca acttgcttag gagcactttg
     1921 ggtgtctagc acttaacagc catagaaaat aaatattatg tatagaataa atattatgta
     1981 tagcctgggg atggagagta gatagacaga aaatcattag ataatttaag tgctaagttg
     2041 ggtggagttt ttagtatcaa atcacttcta gacagtttaa tttgttaaat tctcacagga
     2101 tggtgattta taacctgccc aaagttatga atattcttag tgagctcagg cttagagctc
     2161 tttgagagac acttacctaa ataagtgttc taagtcagtg gttcccaaat ctgactaatg
     2221 agaaccatct gggaagtttg tttaacgatt ttaaaataaa atgttttaag atttctgttt
     2281 cccaacctca aacctactga accaaaatgt ccagggatga agcttgggga tttgttgttg
     2341 ttgtttttca gagtttccca ggcaattctg atcagcccag tttggaaacc cttgctggag
     2401 aacgtggtaa agatgcagag acccaggcct tccctgggct tctgtaggct ccattaattc
     2461 tccaggtgat tttgacacac accagacttt gaaaagcact gtcctaagag atcagaggcc
     2521 aaatatcaga gccttcggtg gtttgtttgt
//
LOCUS       XM_032606809            2493 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus taste 1 receptor member 1 (TAS1R1), mRNA.
ACCESSION   XM_032606809
VERSION     XM_032606809.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-188               VOSU01000011.1     4730795-4730982
            189-494             VOSU01000011.1     4732943-4733248
            495-936             VOSU01000011.1     4735286-4735727
            937-938             "NN"               1-2
            939-1230            VOSU01000011.1     4735728-4736019
            1231-1320           VOSU01000011.1     4736472-4736561
            1321-1322           "NN"               1-2
            1323-1440           VOSU01000011.1     4736562-4736679
            1441-1561           VOSU01000011.1     4737228-4737348
            1562-1878           VOSU01000011.1     4738602-4738918
            1879-1880           "NN"               1-2
            1881-2421           VOSU01000011.1     4738919-4739459
            2422-2493           VOSU01000011.1     4739461-4739532
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2493
                     /gene="TAS1R1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 6 bases in 3 codons;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins"
                     /db_xref="GeneID:116740827"
     CDS             1..2493
                     /gene="TAS1R1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 6 bases in 3 codons;
                     deleted 1 base in 1 codon; substituted 1 base at 1 genomic
                     stop codon"
                     /codon_start=1
                     /transl_except=(pos:2182..2184,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: taste receptor type 1
                     member 1"
                     /protein_id="XP_032462700.1"
                     /db_xref="GeneID:116740827"
                     /translation="MLLWGASFICLQLSLSCCWAFSCHSTASSDFSLPGDYLLADQFP
                     LHGDYLGVRCRPTVTFCDRPSTFNGHGCHLFQAMQFGIEEINNSTALLPNVTLGYKPY
                     DGCSESANVFATLSPPGPRYVESQGDPAHYSPAIVAVIGPDTSNYVATTAALLSPFLM
                     PLISCSDASSVTLSVKRLCPSFLHTIPSDERQVEILTLPSRRFGWVWISMVGSEGDYR
                     QLGVQALEDQATQQGIYVAFKDTVPFSTQPGHERMQSVIRCLAQARTAVVGICSSRQL
                     ARVFFESVVLAKPTAEVWIASEDWAISRHISNVPGIXGASAQRRVPGLKEFEEAYVWA
                     DKGALGPCLRGSWCSSNQLCRECWAFEAQKMLTLGAFSMSSAYNIYQAVYAVAHSLHQ
                     LLGCASGVCSRGWVYPWQLLEQILKVNFLLHKDIVTFNDNGDPLSSYNXAWDWSGPNW
                     TFRVVGSSFWSPVWLDINTIKSQWHGKDNWVPQSVCSSDCPEGDQRVIMGFHHCCFEC
                     VLCEAGTFLNKSDPYSCQPCGKEEWAPERSQACFPCTVVFLTWHEPISWVLLAANTLL
                     LLLAAGTAGLFAWYLDTPVVRSAGGRLCFLMLGSLAGGSCGHYGFFGEPTLPTCLLRE
                     GLXALGFAIFLSCLTIRSFQLVFIFKFSAKVPTFFRAWVQNHSAGPLVVISSTTHLLI
                     CLTWLAVWTPLPPREYQPFPQLAVLDCTEANPPGFMLAFAYNGLLXVSAFACSFLGKD
                     LPENYSEVKCVTFSLLLNFMSWIAFFTMASVYQGKHLPTVSVLAKPSSLSGGFSGYFL
                     PKCYVILCLPDLNSTEHFQASTQDYTRRCGST"
     misc_feature    91..1446
                     /gene="TAS1R1"
                     /note="Type 1 periplasmic binding fold superfamily;
                     Region: Periplasmic_Binding_Protein_type1; cl10011"
                     /db_xref="CDD:471960"
     misc_feature    1444..1602
                     /gene="TAS1R1"
                     /note="Nine Cysteines Domain of family 3 GPCR; Region:
                     NCD3G; pfam07562"
                     /db_xref="CDD:462210"
     misc_feature    1660..2418
                     /gene="TAS1R1"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    1663..1737
                     /gene="TAS1R1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    1771..1836
                     /gene="TAS1R1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    1861..1929
                     /gene="TAS1R1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    2008..2058
                     /gene="TAS1R1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    2137..2208
                     /gene="TAS1R1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    2242..2310
                     /gene="TAS1R1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    2323..2400
                     /gene="TAS1R1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 atgttactct ggggggcgag cttcatctgc ctgcagcttt ccctctcctg ctgctgggct
       61 ttcagctgcc acagcaccgc gtcctctgac ttcagcctcc ctggggatta cctgcttgcg
      121 gaccagtttc ctctccacgg tgactatcta ggggtgagat gcagacccac agtgaccttc
      181 tgtgacaggc ctagcacctt caatggccac ggctgccacc tcttccaggc catgcagttt
      241 ggcatcgagg agataaacaa ctccaccgcc ctgctgccca acgtcaccct ggggtacaag
      301 ccgtacgacg ggtgctcgga gtcagccaac gtgtttgcta cgctgagccc gccagggccg
      361 cgctacgtgg agagccaagg agaccctgcc cactactccc ccgcgattgt ggcagtgatt
      421 gggcccgaca ccagcaacta tgttgccacc actgcagccc tgctgagccc cttcctgatg
      481 cccctgataa gctgctctga tgccagcagc gtgacgctca gcgtgaagcg gctttgcccc
      541 tcttttctgc acaccatccc aagtgatgag cgccaggtgg agatcttgac gctgccgtcg
      601 cggaggttcg ggtgggtctg gatctccatg gtgggcagcg aaggtgacta caggcagcta
      661 ggggtgcagg cgctggagga ccaggccacc cagcagggca tctacgttgc cttcaaggac
      721 actgtgcctt tctctaccca gccgggccat gagaggatgc agagcgtgat acgctgcctg
      781 gcccaagcga ggaccgcggt cgtgggcatt tgctccagca ggcagctggc cagggtgttc
      841 tttgagtccg tggtgctggc caagccgact gccgaggtgt ggatcgcctc agaagactgg
      901 gccatctcca gacacatcag caatgtgcct gggatcnntg gggcatcagc acagaggcgt
      961 gtccctggcc tgaaggagtt tgaagaggcc tatgtctggg cagacaaagg agcccttggg
     1021 ccttgcctca ggggctcctg gtgcagcagc aaccagctct gtagagagtg ctgggctttc
     1081 gaggcacaga agatgctcac acttggagca ttctccatga gctccgccta caacatctac
     1141 caggctgtct atgccgtggc tcacagcctc caccagctcc tgggctgtgc ctctggagtc
     1201 tgttccagag gctgggtcta cccctggcag cttctggagc agatactcaa ggtgaatttc
     1261 cttttacaca aggacattgt gacatttaat gacaatggcg accccctcag cagttataat
     1321 nntgcctggg actggagtgg ccccaactgg accttcaggg tcgtcggctc ctccttttgg
     1381 tctccagttt ggctagacat aaatacgatc aaaagccagt ggcatggaaa ggacaactgg
     1441 gtacctcagt ctgtgtgttc cagcgactgt cctgaagggg accagagagt gatcatgggc
     1501 ttccaccact gctgcttcga gtgtgtgctc tgtgaggccg ggaccttcct caacaagagt
     1561 gacccctaca gctgccaacc ttgtgggaaa gaagagtggg cacctgagag aagccaggcc
     1621 tgcttcccat gcaccgtggt gtttctgact tggcatgagc ccatctcttg ggtgctcctg
     1681 gcagctaata cgctgctgct gctgctggcg gctgggactg ctggcctgtt tgcctggtac
     1741 ctagacacgc ctgtggtgag gtcggctgga ggccggctgt gcttcctcat gctgggctcc
     1801 ctggcggggg gcagctgcgg ccactatggt ttctttgggg agcccactct gcccacatgc
     1861 ctgctgcgcg aaggcctcnn tgcccttggt tttgccatct tcctgtcctg cctgacgatc
     1921 cgctccttcc aacttgtgtt catcttcaag ttttctgcca aggtacccac cttcttccgt
     1981 gcgtgggtcc aaaaccacag tgctggcccg ttggtggtga tcagctcaac aacccacctg
     2041 cttatctgtc taacgtggct tgcggtgtgg accccactgc cccctaggga ataccagccc
     2101 ttccctcagc tggcggtgct tgactgcaca gaggctaacc caccgggctt catgctggct
     2161 ttcgcctaca atggcctcct ctaggtcagc gcctttgcct gcagcttcct gggcaaggac
     2221 ctgccagaga actacagcga ggtcaaatgt gtcaccttca gcctgctcct caacttcatg
     2281 tcctggatcg ccttcttcac catggccagt gtctaccagg gcaagcacct gcccacggtc
     2341 agcgtgctgg ccaagccgag cagcctgagt ggcggcttca gcggttattt cctccccaag
     2401 tgctatgtga tcctgtgctt gccggatctc aacagcaccg agcacttcca ggcctccacc
     2461 caggactaca ccaggcgctg tggctccacc tga
//
LOCUS       XM_032606821            1771 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus aph-1 homolog A, gamma-secretase subunit
            (APH1A), mRNA.
ACCESSION   XM_032606821
VERSION     XM_032606821.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1771
                     /gene="APH1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740833"
     CDS             11..1033
                     /gene="APH1A"
                     /codon_start=1
                     /product="gamma-secretase subunit APH-1A"
                     /protein_id="XP_032462712.1"
                     /db_xref="GeneID:116740833"
                     /translation="MGTRQGFVPSSASVEEVVPTCIWGFGVPAFPGVRGDIAPRPSRG
                     RVATPRGLPGWRASSLRLSWPGPHLAPSSAAMGAAVFFGCTFVAFGPAFALFLITVAG
                     DPLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEV
                     FRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALG
                     PGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTS
                     GLTFLNPWYEASLLPIYAVTVSMGLWAFITAGGSFRSIQRSLSCRRQEDSRVMVYSAL
                     RIPPED"
     misc_feature    242..934
                     /gene="APH1A"
                     /note="Aph-1 protein; Region: Aph-1; pfam06105"
                     /db_xref="CDD:461830"
ORIGIN      
        1 ggaggtggcc atggggacgc ggcaggggtt tgtcccctcc tcggcttccg tagaggaagt
       61 cgtgccgacc tgtatctggg gtttcggtgt ccccgccttc ccgggggtcc ggggtgacat
      121 tgcaccgcgc ccctcacggg gtcgcgtcgc caccccacgc ggactccctg gctggcgtgc
      181 ttcatccctt cgcctctctt ggccgggccc ccacctcgcc cccagcagcg cagccatggg
      241 ggccgcagtg tttttcggat gcactttcgt cgctttcggc ccggcctttg cgcttttctt
      301 gatcactgtg gcaggagacc cgcttcgcgt catcatcttg gtcgccgggg catttttctg
      361 gctggtctcc ctgctcttgg cctctgtggt ctggttcatc ttggtccatg tgaccgaccg
      421 gtcggatgcc cgactccagt atggcctcct gatttttggt gctgcagtct ctgtccttct
      481 acaggaggtg ttccgctttg cctactacaa gctgcttaag aaggcagatg aggggttagc
      541 atcgctgagt gaggacggaa gatcacccat ctccatccgc cagatggcct atgtttctgg
      601 tctttccttc ggtatcatca gtggtgtctt ctctgttatc aatatcttgg ccgatgctct
      661 tgggccaggt gtggttggga tccatggaga ttcaccctat tacttcttga cttcagcctt
      721 tctgacagca gccattatcc tgctccatac cttttgggga gttgtgttct ttgatgcctg
      781 tgagaggaga cggtactggg ctttgggcct ggtggttggg agtcacctac tgacatcggg
      841 actgacattc ctgaacccct ggtacgaggc cagcctgctg cccatctatg cagtcactgt
      901 ttccatgggg ctctgggcct tcatcacagc tggagggtcc ttccgaagta tccagcgcag
      961 tctctcgtgc cgacggcagg aggacagtcg ggtgatggtg tattctgccc tgcgcatccc
     1021 acccgaggac tgagggaacc ttggggggga cccctgggcc tggggtgccc tcctgattcc
     1081 tcgccctgta tttctccatc tcctgttctg gacagtgcag gttgccaaga aaagggacct
     1141 agtttagcca ttgctgtgga gatgaagtca attggaggtt caagggtaga tgagctctga
     1201 gtttcccagt accccctccc cagactggat atcttaagtc tttttctcag gtctgagggg
     1261 aaccgtttct ggtgtgataa agacccccaa attgcctttt tcttttgaag cgggaggagg
     1321 gaggaagtat gtgttaattc ttctcctaac ctccttggac tatattttcc ctcctcaaat
     1381 tgctccttat ggctgggctt atatctatcc agctttcccc ttggtcccag gctttggggg
     1441 aaaggaagga agtgcatgtt tgggaactgg tattactgga actaatgttt caacctcctt
     1501 gaccaccagc atccctcctc tccccaaggt gaactggagg gtgctgcggg gagctggccc
     1561 actccagagc tgcagtgcca ctggggaagt cagcctaccg taacatcgca gggaaggagg
     1621 gcagattttt ttctagtttt taattggggg atgtgggggg ggcggggagg ttttctataa
     1681 actgtatcat tttctgctga ggatggcata tcccatcctt ttaatcaagg tgattgtgat
     1741 tttgaccaat aaaaaggact ttataattgt g
//
LOCUS       XM_032606832            4965 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium sodium-activated channel
            subfamily T member 2 (KCNT2), transcript variant X1, mRNA.
ACCESSION   XM_032606832
VERSION     XM_032606832.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4965
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4965
                     /gene="KCNT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740840"
     CDS             85..3441
                     /gene="KCNT2"
                     /codon_start=1
                     /product="potassium channel subfamily T member 2 isoform
                     X1"
                     /protein_id="XP_032462723.1"
                     /db_xref="GeneID:116740840"
                     /translation="MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTF
                     KERLKLFFIKNQRSSLRIRLFNFSLKLLSCFLYIIRVLLENPSQGNEWSHIFWVNRSL
                     PLWGLQVSVALISLFETILLGYLSYKGNIWEQILRIPFILEVINAVPFIISIFWPSLR
                     NLFVPVFLNCWLAKHALENMINDLHRAIQRTQSAMFNQVLILISTLLCLIFTCICGIQ
                     HLERIGKKLNLFDSLYFCIVTFSTVGFGDVTPETWSSKLFVVAMICVALVVLPIQFEQ
                     LAYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVI
                     LCPTEMDVQVRRVLQIPMWSQRVIYLQGSALKDQDLLRAKMDDAEACFILSSRCEVDR
                     TSSDHQTILRAWAVKDFAPNCPLYVQILKPENKFHIKFADHVVCEEEFKYAMLALNCI
                     CPATSTLITLLVHTSRGQEGQQSPEQWQKMYGRCSGNEVYHIVLEESTFFAEYEGKSF
                     TYASFHAHKKFGVCLIGIRREDNKNILLNPGPRYIMSATDICFYINITKEENSAFKNH
                     DHQKKSNVSRSFYHGPSRLPVHSIIASMGTVAIDLQDTSCRSASGPTLSLPSEGNKEV
                     RRPSIAPVLEVADTSSLQTCDLLSDQSEDETTPDEEMSSNVEYAKGYPPYSPYIGSSP
                     TFCHLLHEKVPFCCLRLDKSCQHNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLR
                     AYYRPKKELNPVILLLDNPLDDLLRCGVTFAANMVVVDKESTMSAEEDYMADAKTIVN
                     VQTLFRLFSSLSIITELTHPANMRFMQFRAKDCYSLALSKLEKKERERGSNLAFMFRL
                     PFAAGRVFSISMLDTLLYQSFVKDYMISITRLLLGLDTTPGSGFLCSMKITEDDLWIR
                     TYARLYQKLCSSTGDVPIGIYRTESQKLTTSECREIASQSQISISVEEWEDTKDAKEQ
                     GHHRSNHRNSTSSDQSDHPLLRRKSMQWARRLSRKGPKHSGKTAEKITQQRLNLYRRS
                     ERQELAELVKNRMKHLGLSTVGYDEMNDHQSTLSYILINPSPDTRLELNDVVYLIRPD
                     PLAYLPNGEPSRKNSICNTTGQDSREETQL"
     misc_feature    271..894
                     /gene="KCNT2"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    700..900
                     /gene="KCNT2"
                     /note="Ion channel; Region: Ion_trans_2; pfam07885"
                     /db_xref="CDD:462301"
     misc_feature    1378..1662
                     /gene="KCNT2"
                     /note="Calcium-activated BK potassium channel alpha
                     subunit; Region: BK_channel_a; pfam03493"
                     /db_xref="CDD:460947"
ORIGIN      
        1 tcgccctcta ctccgcaata ttttctttct cttgtcctcc tctcctccat tcgttgtttt
       61 acgtttccca ctctttgagg aaggatggtt gatttggaga gcgaagtgcc ccctctgcct
      121 cccaggtaca ggtttcggga tttgctgcta ggggaccaag gatggcagaa cgacgacagg
      181 gtgcaagttg aattttatat gaatgaaaac acatttaaag agagactaaa gttatttttt
      241 atcaaaaacc agagatcaag tctaagaata cgtctgttca atttttctct caaattatta
      301 agctgctttt tgtacataat ccgagtgcta ctagaaaacc cttcacaagg aaatgaatgg
      361 tctcatatct tttgggtgaa cagaagtcta cctttatggg gcttacaggt ttcagtggca
      421 ttgataagtc tctttgaaac aatactactt ggttatctca gttataaggg aaacatctgg
      481 gaacagattt tacgaatacc cttcatcttg gaagtaatta atgcggttcc cttcattatc
      541 tcaatattct ggccttcctt aagaaatcta tttgtcccag tctttctaaa ctgttggctt
      601 gccaaacatg ccttggaaaa tatgattaat gatctacaca gagccattca gcgtacacag
      661 tctgcaatgt ttaatcaagt tttgatttta atatctacat tactatgcct tatcttcacc
      721 tgcatttgtg gaatccaaca tctggaacga ataggaaaga agctgaatct ctttgactcc
      781 ctttatttct gcattgtgac gttttctact gtgggctttg gggatgtcac tccagaaaca
      841 tggtcgtcca agcttttcgt tgttgccatg atctgtgttg ctctcgtggt tctccccata
      901 cagtttgaac agctggccta tttgtggatg gagagacaaa agtcaggtgg aaactatagt
      961 cgacacagag ctcaaactga aaagcacgtt gttctgtgtg tcagctcact gaagattgac
     1021 ttactcatgg actttttgaa tgaattctat gctcatccaa gactccagga ttattatgtg
     1081 gtgattttgt gtcctactga aatggatgtg caggtccgaa gggtcctaca gattccgatg
     1141 tggtcacaaa gagtcatcta ccttcagggt tcagccctta aagatcagga tctgttgcga
     1201 gcaaagatgg atgatgctga ggcctgtttt attctgagca gccgttgtga agtagatagg
     1261 acatcctctg accaccaaac aattttgaga gcatgggctg taaaagattt tgctccaaat
     1321 tgccctttgt atgtccagat cttaaagcct gaaaataaat tccatatcaa atttgctgat
     1381 catgttgttt gtgaagaaga gtttaaatac gccatgttag ctttaaactg tatatgccca
     1441 gcaacatcta cacttattac actactggtt catacctcta gagggcaaga aggccagcaa
     1501 tcgccagaac aatggcagaa gatgtacggc agatgctctg ggaatgaagt gtaccacatc
     1561 gttttggaag aaagtacatt ttttgctgaa tatgaaggaa agagcttcac ctatgcttct
     1621 ttccatgcac acaaaaagtt tggtgtctgc ttgattggta ttaggaggga ggataataaa
     1681 aacattttgc tgaatccagg tcctcgatac attatgagtg ctacagatat atgtttctat
     1741 attaatatta ccaaagaaga gaattcagca tttaaaaacc acgaccatca gaaaaaaagc
     1801 aatgtatcaa ggtcgtttta tcatggacca tctagattac ctgtacatag cataattgcc
     1861 agcatgggta ctgtggccat agacttgcaa gacacaagct gtaggtcagc aagtggccct
     1921 accctgtctc ttccttcaga aggaaacaaa gaagtcagaa gacccagcat tgctcccgtt
     1981 ttagaggttg cagatacgtc atcacttcaa acatgcgatc ttctaagtga tcaatcagaa
     2041 gatgaaacta caccagatga agaaatgtcc tcaaatgtgg aatatgctaa aggctaccca
     2101 ccttactctc catatatagg cagttcaccc actttttgtc atctccttca tgaaaaagtg
     2161 ccattttgct gcttaagact agacaagagt tgccagcata actactatga ggatgcaaaa
     2221 gcctatggat tcaaaaataa gctaattata gttgcagctg aaacagctgg aaatggattg
     2281 tataatttta ttgttcctct cagggcatat tatagaccaa agaaagaact taatcccgta
     2341 atactgctat tggataaccc tctagacgat ttactcaggt gtggagtgac tttcgctgcc
     2401 aacatggtgg ttgtggacaa agaaagcacc atgagtgccg aggaagacta catggcagat
     2461 gccaaaacga ttgtaaacgt gcagaccctt ttcaggttgt tttccagtct cagtattatc
     2521 acagagctca cccacccagc caacatgaga ttcatgcaat tcagagccaa agactgttac
     2581 tcccttgctc tttccaagct ggaaaagaaa gaaagagagc gaggttctaa tttggccttt
     2641 atgttccgac tgccttttgc tgccgggagg gtgttcagta tcagtatgtt ggacacgctt
     2701 ctttaccagt catttgtgaa ggactacatg atttctatca ccagacttct gttgggattg
     2761 gacactacac caggatcggg gtttctttgc tctatgaaaa tcaccgagga tgacttatgg
     2821 atcaggactt atgccagact gtatcagaag ttatgttctt ctactggaga tgttcccatt
     2881 ggaatctaca ggactgaatc tcaaaaactt actacatctg agtgtcgaga aatagcatca
     2941 caatctcaaa tatccatcag tgtggaagag tgggaagaca ccaaagatgc caaagagcaa
     3001 ggtcaccacc gaagtaacca ccgcaactca acatccagtg accagtccga ccatcccctg
     3061 ctaaggagga agagcatgca gtgggcccga agactgagca gaaaaggtcc caaacactcc
     3121 ggtaaaacag ctgagaaaat aacccagcag cgcctgaacc tctacaggag gtcagaaaga
     3181 caagagcttg ctgaacttgt gaaaaataga atgaaacact tgggtctttc tacagtggga
     3241 tatgatgaaa tgaacgatca tcaaagtacc ctctcctaca tcctgataaa cccatctcca
     3301 gataccagac tagagctgaa tgatgttgta tacttaatcc gacccgatcc actggcctac
     3361 ctaccaaatg gtgaacccag tcgaaaaaac agcatctgca acaccacagg ccaagattct
     3421 cgggaggaaa ctcagctttg ataaaaaaga aaataagaga tttttttctc ctacaaggat
     3481 cttgcttgaa acaactctaa atcttagaaa aacaagagtg ttgctggcat gaaataaagt
     3541 agattggagt atatccaatt ctctcatatt aaaaaagaaa tctattctcc tagaagttta
     3601 gataattttg aaatttaaag tactgctttg ctggtactcc tcccattaat atttgaaaga
     3661 catcaatgga atgattttga acacctaaat tgaaacgcaa aaatttgaac ctgatgtttc
     3721 attgtttgac aataatacaa actgtatgaa gccaattttt aaaaagtatt aaggtttatg
     3781 aaagtaaact agaagtccag ttatatctgg tgcgtcccaa tggacataga agattgttgc
     3841 tccacttaaa attaaatgtg tcctattata ttctttaaac ttgccatttt ataaaaatga
     3901 gctcatcaca agtgtccggc cttctctaca cagattaaca gacaaacttg tatggctgac
     3961 ttttgtgtaa gaatcatagt ttgctttaga atatgaatct ttaagtcatt ttaccctttt
     4021 tgttgacttt tcacatgata tattcatttt agaatttgag ctgttcatag catgttttat
     4081 tactctgaag aaaccaaaac aaacaaaaag aaatatcaac tacatgaact tttccctaac
     4141 tttatgttta acacacgttg tatgccaaga acagtatgcg aaagcaaata tttattgttt
     4201 tcctaaaaga gtcctaacat agagaatact taaaacacat ttgttgactt taatctaaga
     4261 attgaaacat taattgaaat attcagtaat gattttcatt agactcttga gctttaacat
     4321 tttttatata tctatacagt atatttcatt agaaagatag tttaaaatta aaagaaacaa
     4381 aattatactt tttatagaat acaaagaaat ttcaaaacat taaaagtcct cctttatgcc
     4441 tttagtattg aaataataat acaccaaaaa ttggtatatc aaaaattttg atctaatttt
     4501 ggaaagttat ctataggagc tatgttttaa cattgtgagg aaacagcata aaataaaaat
     4561 aagtaggttt tgctgtttaa atgtaaggta aaccatacat aatttgacag ttataaataa
     4621 agaaacgctg acctttggca acaccagtgc ttttacctac gttgcattat tccctttcag
     4681 aaacaggttg aaaagcacag agcacagttt gccaggcagt tgaaatgcac tgtcattccc
     4741 atgaaagaga cattgacaaa tttaaaaaga tatttttctt ccaattttgt atgtttttat
     4801 ttctgaattt gacattaaat tttaattcaa cagaaaatag gacacataag actagaaaga
     4861 gacgtgttat catttctttt cacaaagaag cagataaatt gaaaggaaaa tagaaggatt
     4921 caaaataata aagagggctt ccctggtggc gcagtggttg agagt
//
LOCUS       XM_032606842            4944 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium sodium-activated channel
            subfamily T member 2 (KCNT2), transcript variant X2, mRNA.
ACCESSION   XM_032606842
VERSION     XM_032606842.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4944
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4944
                     /gene="KCNT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116740840"
     CDS             85..3420
                     /gene="KCNT2"
                     /codon_start=1
                     /product="potassium channel subfamily T member 2 isoform
                     X2"
                     /protein_id="XP_032462733.1"
                     /db_xref="GeneID:116740840"
                     /translation="MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTF
                     KERLKLFFIKNQRSSLRIRLFNFSLKLLSCFLYIIRVLLENPSQGNEWSHIFWVNRSL
                     PLWGLQVSVALISLFETILLGYLSYKGNIWEQILRIPFILEVINAVPFIISIFWPSLR
                     NLFVPVFLNCWLAKHALENMINDLHRAIQRTQSAMFNQVLILISTLLCLIFTCICGIQ
                     HLERIGKKLNLFDSLYFCIVTFSTVGFGDVTPETWSSKLFVVAMICVALVVLPIQFEQ
                     LAYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVI
                     LCPTEMDVQVRRVLQIPMWSQRVIYLQGSALKDQDLLRAKMDDAEACFILSSRCEVDR
                     TSSDHQTILRAWAVKDFAPNCPLYVQILKPENKFHIKFADHVVCEEEFKYAMLALNCI
                     CPATSTLITLLVHTSRGQEGQQSPEQWQKMYGRCSGNEVYHIVLEESTFFAEYEGKSF
                     TYASFHAHKKFGVCLIGIRREDNKNILLNPGPRYIMSATDICFYINITKEENSAFKNH
                     DHQKKSNVSRSFYHGPSRLPVHSIIASMGTVAIDLQDTSCRSASGPTLSLPSEGNKEV
                     RRPSIAPVLEVADTSSLQTCDLLSDQSEDETTPDEEMSSNVEYAKGYPPYSPYIGSSP
                     TFCHLLHEKVPFCCLRLDKSCQHNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLR
                     AYYRPKKELNPVILLLDNPLDDLLRCGVTFAANMVVVDKESTMSAEEDYMADAKTIVN
                     VQTLFRLFSSLSIITELTHPANMRFMQFRAKDCYSLALSKLEKKERERGSNLAFMFRL
                     PFAAGRVFSISMLDTLLYQSFVKDYMISITRLLLGLDTTPGSGFLCSMKITEDDLWIR
                     TYARLYQKLCSSTGDVPIGIYRTESQKLTTSESQISISVEEWEDTKDAKEQGHHRSNH
                     RNSTSSDQSDHPLLRRKSMQWARRLSRKGPKHSGKTAEKITQQRLNLYRRSERQELAE
                     LVKNRMKHLGLSTVGYDEMNDHQSTLSYILINPSPDTRLELNDVVYLIRPDPLAYLPN
                     GEPSRKNSICNTTGQDSREETQL"
     misc_feature    271..894
                     /gene="KCNT2"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    700..900
                     /gene="KCNT2"
                     /note="Ion channel; Region: Ion_trans_2; pfam07885"
                     /db_xref="CDD:462301"
     misc_feature    1378..1662
                     /gene="KCNT2"
                     /note="Calcium-activated BK potassium channel alpha
                     subunit; Region: BK_channel_a; pfam03493"
                     /db_xref="CDD:460947"
ORIGIN      
        1 tcgccctcta ctccgcaata ttttctttct cttgtcctcc tctcctccat tcgttgtttt
       61 acgtttccca ctctttgagg aaggatggtt gatttggaga gcgaagtgcc ccctctgcct
      121 cccaggtaca ggtttcggga tttgctgcta ggggaccaag gatggcagaa cgacgacagg
      181 gtgcaagttg aattttatat gaatgaaaac acatttaaag agagactaaa gttatttttt
      241 atcaaaaacc agagatcaag tctaagaata cgtctgttca atttttctct caaattatta
      301 agctgctttt tgtacataat ccgagtgcta ctagaaaacc cttcacaagg aaatgaatgg
      361 tctcatatct tttgggtgaa cagaagtcta cctttatggg gcttacaggt ttcagtggca
      421 ttgataagtc tctttgaaac aatactactt ggttatctca gttataaggg aaacatctgg
      481 gaacagattt tacgaatacc cttcatcttg gaagtaatta atgcggttcc cttcattatc
      541 tcaatattct ggccttcctt aagaaatcta tttgtcccag tctttctaaa ctgttggctt
      601 gccaaacatg ccttggaaaa tatgattaat gatctacaca gagccattca gcgtacacag
      661 tctgcaatgt ttaatcaagt tttgatttta atatctacat tactatgcct tatcttcacc
      721 tgcatttgtg gaatccaaca tctggaacga ataggaaaga agctgaatct ctttgactcc
      781 ctttatttct gcattgtgac gttttctact gtgggctttg gggatgtcac tccagaaaca
      841 tggtcgtcca agcttttcgt tgttgccatg atctgtgttg ctctcgtggt tctccccata
      901 cagtttgaac agctggccta tttgtggatg gagagacaaa agtcaggtgg aaactatagt
      961 cgacacagag ctcaaactga aaagcacgtt gttctgtgtg tcagctcact gaagattgac
     1021 ttactcatgg actttttgaa tgaattctat gctcatccaa gactccagga ttattatgtg
     1081 gtgattttgt gtcctactga aatggatgtg caggtccgaa gggtcctaca gattccgatg
     1141 tggtcacaaa gagtcatcta ccttcagggt tcagccctta aagatcagga tctgttgcga
     1201 gcaaagatgg atgatgctga ggcctgtttt attctgagca gccgttgtga agtagatagg
     1261 acatcctctg accaccaaac aattttgaga gcatgggctg taaaagattt tgctccaaat
     1321 tgccctttgt atgtccagat cttaaagcct gaaaataaat tccatatcaa atttgctgat
     1381 catgttgttt gtgaagaaga gtttaaatac gccatgttag ctttaaactg tatatgccca
     1441 gcaacatcta cacttattac actactggtt catacctcta gagggcaaga aggccagcaa
     1501 tcgccagaac aatggcagaa gatgtacggc agatgctctg ggaatgaagt gtaccacatc
     1561 gttttggaag aaagtacatt ttttgctgaa tatgaaggaa agagcttcac ctatgcttct
     1621 ttccatgcac acaaaaagtt tggtgtctgc ttgattggta ttaggaggga ggataataaa
     1681 aacattttgc tgaatccagg tcctcgatac attatgagtg ctacagatat atgtttctat
     1741 attaatatta ccaaagaaga gaattcagca tttaaaaacc acgaccatca gaaaaaaagc
     1801 aatgtatcaa ggtcgtttta tcatggacca tctagattac ctgtacatag cataattgcc
     1861 agcatgggta ctgtggccat agacttgcaa gacacaagct gtaggtcagc aagtggccct
     1921 accctgtctc ttccttcaga aggaaacaaa gaagtcagaa gacccagcat tgctcccgtt
     1981 ttagaggttg cagatacgtc atcacttcaa acatgcgatc ttctaagtga tcaatcagaa
     2041 gatgaaacta caccagatga agaaatgtcc tcaaatgtgg aatatgctaa aggctaccca
     2101 ccttactctc catatatagg cagttcaccc actttttgtc atctccttca tgaaaaagtg
     2161 ccattttgct gcttaagact agacaagagt tgccagcata actactatga ggatgcaaaa
     2221 gcctatggat tcaaaaataa gctaattata gttgcagctg aaacagctgg aaatggattg
     2281 tataatttta ttgttcctct cagggcatat tatagaccaa agaaagaact taatcccgta
     2341 atactgctat tggataaccc tctagacgat ttactcaggt gtggagtgac tttcgctgcc
     2401 aacatggtgg ttgtggacaa agaaagcacc atgagtgccg aggaagacta catggcagat
     2461 gccaaaacga ttgtaaacgt gcagaccctt ttcaggttgt tttccagtct cagtattatc
     2521 acagagctca cccacccagc caacatgaga ttcatgcaat tcagagccaa agactgttac
     2581 tcccttgctc tttccaagct ggaaaagaaa gaaagagagc gaggttctaa tttggccttt
     2641 atgttccgac tgccttttgc tgccgggagg gtgttcagta tcagtatgtt ggacacgctt
     2701 ctttaccagt catttgtgaa ggactacatg atttctatca ccagacttct gttgggattg
     2761 gacactacac caggatcggg gtttctttgc tctatgaaaa tcaccgagga tgacttatgg
     2821 atcaggactt atgccagact gtatcagaag ttatgttctt ctactggaga tgttcccatt
     2881 ggaatctaca ggactgaatc tcaaaaactt actacatctg agtctcaaat atccatcagt
     2941 gtggaagagt gggaagacac caaagatgcc aaagagcaag gtcaccaccg aagtaaccac
     3001 cgcaactcaa catccagtga ccagtccgac catcccctgc taaggaggaa gagcatgcag
     3061 tgggcccgaa gactgagcag aaaaggtccc aaacactccg gtaaaacagc tgagaaaata
     3121 acccagcagc gcctgaacct ctacaggagg tcagaaagac aagagcttgc tgaacttgtg
     3181 aaaaatagaa tgaaacactt gggtctttct acagtgggat atgatgaaat gaacgatcat
     3241 caaagtaccc tctcctacat cctgataaac ccatctccag ataccagact agagctgaat
     3301 gatgttgtat acttaatccg acccgatcca ctggcctacc taccaaatgg tgaacccagt
     3361 cgaaaaaaca gcatctgcaa caccacaggc caagattctc gggaggaaac tcagctttga
     3421 taaaaaagaa aataagagat ttttttctcc tacaaggatc ttgcttgaaa caactctaaa
     3481 tcttagaaaa acaagagtgt tgctggcatg aaataaagta gattggagta tatccaattc
     3541 tctcatatta aaaaagaaat ctattctcct agaagtttag ataattttga aatttaaagt
     3601 actgctttgc tggtactcct cccattaata tttgaaagac atcaatggaa tgattttgaa
     3661 cacctaaatt gaaacgcaaa aatttgaacc tgatgtttca ttgtttgaca ataatacaaa
     3721 ctgtatgaag ccaattttta aaaagtatta aggtttatga aagtaaacta gaagtccagt
     3781 tatatctggt gcgtcccaat ggacatagaa gattgttgct ccacttaaaa ttaaatgtgt
     3841 cctattatat tctttaaact tgccatttta taaaaatgag ctcatcacaa gtgtccggcc
     3901 ttctctacac agattaacag acaaacttgt atggctgact tttgtgtaag aatcatagtt
     3961 tgctttagaa tatgaatctt taagtcattt tacccttttt gttgactttt cacatgatat
     4021 attcatttta gaatttgagc tgttcatagc atgttttatt actctgaaga aaccaaaaca
     4081 aacaaaaaga aatatcaact acatgaactt ttccctaact ttatgtttaa cacacgttgt
     4141 atgccaagaa cagtatgcga aagcaaatat ttattgtttt cctaaaagag tcctaacata
     4201 gagaatactt aaaacacatt tgttgacttt aatctaagaa ttgaaacatt aattgaaata
     4261 ttcagtaatg attttcatta gactcttgag ctttaacatt ttttatatat ctatacagta
     4321 tatttcatta gaaagatagt ttaaaattaa aagaaacaaa attatacttt ttatagaata
     4381 caaagaaatt tcaaaacatt aaaagtcctc ctttatgcct ttagtattga aataataata
     4441 caccaaaaat tggtatatca aaaattttga tctaattttg gaaagttatc tataggagct
     4501 atgttttaac attgtgagga aacagcataa aataaaaata agtaggtttt gctgtttaaa
     4561 tgtaaggtaa accatacata atttgacagt tataaataaa gaaacgctga cctttggcaa
     4621 caccagtgct tttacctacg ttgcattatt ccctttcaga aacaggttga aaagcacaga
     4681 gcacagtttg ccaggcagtt gaaatgcact gtcattccca tgaaagagac attgacaaat
     4741 ttaaaaagat atttttcttc caattttgta tgtttttatt tctgaatttg acattaaatt
     4801 ttaattcaac agaaaatagg acacataaga ctagaaagag acgtgttatc atttcttttc
     4861 acaaagaagc agataaattg aaaggaaaat agaaggattc aaaataataa agagggcttc
     4921 cctggtggcg cagtggttga gagt
//
LOCUS       XM_032606866            2853 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf116 homolog
            (C1H1orf116), transcript variant X1, mRNA.
ACCESSION   XM_032606866
VERSION     XM_032606866.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2853
                     /gene="C1H1orf116"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740857"
     CDS             263..2083
                     /gene="C1H1orf116"
                     /codon_start=1
                     /product="specifically androgen-regulated gene protein
                     isoform X1"
                     /protein_id="XP_032462757.1"
                     /db_xref="GeneID:116740857"
                     /translation="MPERELWPAGPGLEPVTHIGSCDSMMSTTSTLSGSSDSSYDFLS
                     AEEKECLLFLEKTIGSLDTEADGGLSTDKSGQATTPQGPRTLPTTQPAAQGHPKETVQ
                     QGTEPKRVTPFSLSHLPEPQSLGLRSGSCSLPRNIHIGRNQILRKSTTQTNSHTPGVS
                     DELVPGPEKEQVGQSSEPPQAPTGPRDAALDLDRAFIPPPEAFRDTQPEQRGQRGLPR
                     QPGELSPRLQVHTSLSLQQKRETTSEAMSQKASEEGSTGEPGQPRPPPAVSSQNAKAE
                     DVPVPSEGDPNARLPPLTAPKPRKLPPNIVLKSSRGGFHSDPQNRLSCHSEAGPGDSG
                     PTSSSLQEQRRARREALEKLGLPQDQDEASTHLSKPSIWLRETRTQAPSPAPPVVPAQ
                     VSAATGKAPALAPMWGPSPVKAPGPAPAQPSSPGNVLVPAQEPTPGKVPADKSMPIPI
                     PKAPEANSPLTQPKPDSGLTLQESSIPGLRQMNFKSNTLERSGVGLSSYLSAEKDCSP
                     KTSTSLGKGSFLDKISHKVLRNSRPRPASLGTRKDFEGIQVGKLADPEHELGSKHLSY
                     QGQSRDMLPRSHCVSVKISPKGVSDEKRREALKKLGLLKK"
     misc_feature    380..2053
                     /gene="C1H1orf116"
                     /note="Specifically androgen-regulated gene protein;
                     Region: SARG; pfam15385"
                     /db_xref="CDD:464692"
ORIGIN      
        1 tgagtgtcag ttgccagggt ggggtgaggc agcgcggatg aagactttac ctgtctaggt
       61 aagtcaggga gaggtcaaaa gaagaacagt aggaagcagg ggaagcagtc tctgtctccg
      121 tctctgccct ttgaagtata agggtattcc tttcctctct tcagcccccc gcccagtgaa
      181 ggcccggcct gggacattct tcgcttccct tcgcttcccc tctgagagcc cctttcacca
      241 cccctgcacc ttgcttcagg cgatgcccga gagagagctg tggccagcag ggcctggctt
      301 ggaacccgtg acccacattg gcagctgcga tagcatgatg agcaccacct ccaccctctc
      361 tggatctagt gacagcagct acgacttcct gtccgctgaa gagaaggagt gtctgctctt
      421 cttagagaaa accattggct cattggacac cgaggctgac ggtggactgt ccactgacaa
      481 gtctgggcaa gccacaactc cccaaggtcc ccgaacactg cccacgaccc agcctgccgc
      541 ccagggacat ccgaaagaga ccgttcagca aggaacagag ccaaaaagag tgactccatt
      601 cagcttgtct catctgcctg agcctcaaag cctgggcctc aggtctggct cctgcagcct
      661 ccccagaaat atccacatcg gcagaaacca gatcctcaga aaaagcacca cacagactaa
      721 cagccacacc ccaggggtat ctgacgagct tgtcccaggg cctgagaaag agcaggtggg
      781 ccagagcagt gagccccccc aggcaccgac gggcccccgg gacgctgccc ttgatctgga
      841 cagagctttc atccccccac cagaggcctt ccgggacacc cagccagagc agcgtgggca
      901 acgcggcctg cccagacagc caggggagct gagtcccagg ctccaggtcc acacatcact
      961 cagcctccag caaaaaaggg agaccacttc agaggccatg tcccagaaag ccagtgagga
     1021 aggctcaacc ggggaacctg gacaacctcg gcctcctcca gctgtgtcct ctcagaatgc
     1081 aaaagctgaa gatgttcctg tcccatcaga gggggatcca aatgcccggc tgcctcccct
     1141 cacagcccct aagccacgga agctgccacc aaatattgtt ctgaagagca gccggggtgg
     1201 tttccacagt gatccccaga accggctgtc ttgccactcg gaggctggcc ctggagactc
     1261 gggccccacc tcgtcatcac tgcaggagca gaggagagca cgcagggaag cgctggagaa
     1321 gctggggctg ccccaggacc aagatgaggc cagcacccac ttaagtaagc cctccatctg
     1381 gcttagggag actcgcactc aggccccctc cccggctcca cctgtggttc cagctcaggt
     1441 ctcagcagcg acaggaaagg ctccagcact tgcaccaatg tggggacctt ctccagtgaa
     1501 agctccgggt ccggctccag ctcagccatc ttctccaggc aatgttttgg ttcctgccca
     1561 ggaacccact ccagggaaag ttccagctga caaatccatg ccaattccta tccctaaggc
     1621 cccagaggca aatagtcccc tcactcagcc gaagccagac tctgggctga ctctccagga
     1681 gagcagcatc cctggcctga gacagatgaa cttcaagtcc aacacgctgg agcgttcagg
     1741 cgtggggctg agcagctacc tctcagcaga gaaagattgc agccccaaaa ccagcacctc
     1801 tctgggaaaa ggctccttct tggacaagat ctcacacaag gtcttgcgta actcgcggcc
     1861 gcgcccggcc tccttgggca ccaggaagga cttcgagggt atccaggtgg gcaagttggc
     1921 cgacccggag catgagctgg gttccaagca cctgtcttac caaggacaga gccgtgacat
     1981 gctgcctcga tcccactgtg tcagtgtcaa gatctcccca aaaggtgtgt ctgatgaaaa
     2041 aagaagggag gctctcaaga agctgggcct gttgaagaag taggcactgg ccaccagcac
     2101 ccccacacac ccctcccgca ccccgttatt cgagaagaga cccagggctc cacttagtct
     2161 accccccctc acaagtcagg ggctgggcag gggtcggctt ctctgcagtg tcctcttctc
     2221 tccaagggag agattggagc acacatttat attcagagtg gctgtaccaa tgagtgcctg
     2281 cgtgaaccac cctgaagatg atttccacag gagggtgtgt gtgtgtggta taggctgtgt
     2341 ctatcactga agctgtttat atgacacaga gtcattgctc agaattcctc acttgttgga
     2401 aactttctta catcgggtag agctcagcca agccagaact gagtgcagag gggtggctaa
     2461 gcctgagaaa aaaaaagtca aatgggacaa tggatgtacc cgtgacacta ggcaaatgca
     2521 ggatcacatg aaatgtgggt ctcccagaac ccctgcagtg ggtggagact ggcacagacc
     2581 ttgctggatt cccctctcac ttctggcctc ccggataggg gcctgcggcc aagaggagtt
     2641 ggtttgttat ctcatcatct gctgggcttc tctctgtccc tagtcccaag gaccagacac
     2701 atccctgtca ctaaaaactc ttggttgact gataccagga gagctcttgc tggcctgaga
     2761 agtcaggatg agtgcccaca ctgtacacct ccactggaga ggactttgtc tgtgggcttg
     2821 ttaaattcag taataaacta cggtggtctc tga
//
LOCUS       XM_032606873            2741 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf116 homolog
            (C1H1orf116), transcript variant X2, mRNA.
ACCESSION   XM_032606873
VERSION     XM_032606873.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2741
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2741
                     /gene="C1H1orf116"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740857"
     CDS             151..1971
                     /gene="C1H1orf116"
                     /codon_start=1
                     /product="specifically androgen-regulated gene protein
                     isoform X1"
                     /protein_id="XP_032462764.1"
                     /db_xref="GeneID:116740857"
                     /translation="MPERELWPAGPGLEPVTHIGSCDSMMSTTSTLSGSSDSSYDFLS
                     AEEKECLLFLEKTIGSLDTEADGGLSTDKSGQATTPQGPRTLPTTQPAAQGHPKETVQ
                     QGTEPKRVTPFSLSHLPEPQSLGLRSGSCSLPRNIHIGRNQILRKSTTQTNSHTPGVS
                     DELVPGPEKEQVGQSSEPPQAPTGPRDAALDLDRAFIPPPEAFRDTQPEQRGQRGLPR
                     QPGELSPRLQVHTSLSLQQKRETTSEAMSQKASEEGSTGEPGQPRPPPAVSSQNAKAE
                     DVPVPSEGDPNARLPPLTAPKPRKLPPNIVLKSSRGGFHSDPQNRLSCHSEAGPGDSG
                     PTSSSLQEQRRARREALEKLGLPQDQDEASTHLSKPSIWLRETRTQAPSPAPPVVPAQ
                     VSAATGKAPALAPMWGPSPVKAPGPAPAQPSSPGNVLVPAQEPTPGKVPADKSMPIPI
                     PKAPEANSPLTQPKPDSGLTLQESSIPGLRQMNFKSNTLERSGVGLSSYLSAEKDCSP
                     KTSTSLGKGSFLDKISHKVLRNSRPRPASLGTRKDFEGIQVGKLADPEHELGSKHLSY
                     QGQSRDMLPRSHCVSVKISPKGVSDEKRREALKKLGLLKK"
     misc_feature    268..1941
                     /gene="C1H1orf116"
                     /note="Specifically androgen-regulated gene protein;
                     Region: SARG; pfam15385"
                     /db_xref="CDD:464692"
ORIGIN      
        1 ctgggattgg ctgagtgtca gttgccaggg tggggtgagg cagcgcggat gaagacttta
       61 cctgtctagg cccggcctgg gacattcttc gcttcccttc gcttcccctc tgagagcccc
      121 tttcaccacc cctgcacctt gcttcaggcg atgcccgaga gagagctgtg gccagcaggg
      181 cctggcttgg aacccgtgac ccacattggc agctgcgata gcatgatgag caccacctcc
      241 accctctctg gatctagtga cagcagctac gacttcctgt ccgctgaaga gaaggagtgt
      301 ctgctcttct tagagaaaac cattggctca ttggacaccg aggctgacgg tggactgtcc
      361 actgacaagt ctgggcaagc cacaactccc caaggtcccc gaacactgcc cacgacccag
      421 cctgccgccc agggacatcc gaaagagacc gttcagcaag gaacagagcc aaaaagagtg
      481 actccattca gcttgtctca tctgcctgag cctcaaagcc tgggcctcag gtctggctcc
      541 tgcagcctcc ccagaaatat ccacatcggc agaaaccaga tcctcagaaa aagcaccaca
      601 cagactaaca gccacacccc aggggtatct gacgagcttg tcccagggcc tgagaaagag
      661 caggtgggcc agagcagtga gcccccccag gcaccgacgg gcccccggga cgctgccctt
      721 gatctggaca gagctttcat ccccccacca gaggccttcc gggacaccca gccagagcag
      781 cgtgggcaac gcggcctgcc cagacagcca ggggagctga gtcccaggct ccaggtccac
      841 acatcactca gcctccagca aaaaagggag accacttcag aggccatgtc ccagaaagcc
      901 agtgaggaag gctcaaccgg ggaacctgga caacctcggc ctcctccagc tgtgtcctct
      961 cagaatgcaa aagctgaaga tgttcctgtc ccatcagagg gggatccaaa tgcccggctg
     1021 cctcccctca cagcccctaa gccacggaag ctgccaccaa atattgttct gaagagcagc
     1081 cggggtggtt tccacagtga tccccagaac cggctgtctt gccactcgga ggctggccct
     1141 ggagactcgg gccccacctc gtcatcactg caggagcaga ggagagcacg cagggaagcg
     1201 ctggagaagc tggggctgcc ccaggaccaa gatgaggcca gcacccactt aagtaagccc
     1261 tccatctggc ttagggagac tcgcactcag gccccctccc cggctccacc tgtggttcca
     1321 gctcaggtct cagcagcgac aggaaaggct ccagcacttg caccaatgtg gggaccttct
     1381 ccagtgaaag ctccgggtcc ggctccagct cagccatctt ctccaggcaa tgttttggtt
     1441 cctgcccagg aacccactcc agggaaagtt ccagctgaca aatccatgcc aattcctatc
     1501 cctaaggccc cagaggcaaa tagtcccctc actcagccga agccagactc tgggctgact
     1561 ctccaggaga gcagcatccc tggcctgaga cagatgaact tcaagtccaa cacgctggag
     1621 cgttcaggcg tggggctgag cagctacctc tcagcagaga aagattgcag ccccaaaacc
     1681 agcacctctc tgggaaaagg ctccttcttg gacaagatct cacacaaggt cttgcgtaac
     1741 tcgcggccgc gcccggcctc cttgggcacc aggaaggact tcgagggtat ccaggtgggc
     1801 aagttggccg acccggagca tgagctgggt tccaagcacc tgtcttacca aggacagagc
     1861 cgtgacatgc tgcctcgatc ccactgtgtc agtgtcaaga tctccccaaa aggtgtgtct
     1921 gatgaaaaaa gaagggaggc tctcaagaag ctgggcctgt tgaagaagta ggcactggcc
     1981 accagcaccc ccacacaccc ctcccgcacc ccgttattcg agaagagacc cagggctcca
     2041 cttagtctac cccccctcac aagtcagggg ctgggcaggg gtcggcttct ctgcagtgtc
     2101 ctcttctctc caagggagag attggagcac acatttatat tcagagtggc tgtaccaatg
     2161 agtgcctgcg tgaaccaccc tgaagatgat ttccacagga gggtgtgtgt gtgtggtata
     2221 ggctgtgtct atcactgaag ctgtttatat gacacagagt cattgctcag aattcctcac
     2281 ttgttggaaa ctttcttaca tcgggtagag ctcagccaag ccagaactga gtgcagaggg
     2341 gtggctaagc ctgagaaaaa aaaagtcaaa tgggacaatg gatgtacccg tgacactagg
     2401 caaatgcagg atcacatgaa atgtgggtct cccagaaccc ctgcagtggg tggagactgg
     2461 cacagacctt gctggattcc cctctcactt ctggcctccc ggataggggc ctgcggccaa
     2521 gaggagttgg tttgttatct catcatctgc tgggcttctc tctgtcccta gtcccaagga
     2581 ccagacacat ccctgtcact aaaaactctt ggttgactga taccaggaga gctcttgctg
     2641 gcctgagaag tcaggatgag tgcccacact gtacacctcc actggagagg actttgtctg
     2701 tgggcttgtt aaattcagta ataaactacg gtggtctctg a
//
LOCUS       XM_032606883            2795 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf116 homolog
            (C1H1orf116), transcript variant X3, mRNA.
ACCESSION   XM_032606883
VERSION     XM_032606883.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2795
                     /gene="C1H1orf116"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740857"
     CDS             205..2025
                     /gene="C1H1orf116"
                     /codon_start=1
                     /product="specifically androgen-regulated gene protein
                     isoform X1"
                     /protein_id="XP_032462774.1"
                     /db_xref="GeneID:116740857"
                     /translation="MPERELWPAGPGLEPVTHIGSCDSMMSTTSTLSGSSDSSYDFLS
                     AEEKECLLFLEKTIGSLDTEADGGLSTDKSGQATTPQGPRTLPTTQPAAQGHPKETVQ
                     QGTEPKRVTPFSLSHLPEPQSLGLRSGSCSLPRNIHIGRNQILRKSTTQTNSHTPGVS
                     DELVPGPEKEQVGQSSEPPQAPTGPRDAALDLDRAFIPPPEAFRDTQPEQRGQRGLPR
                     QPGELSPRLQVHTSLSLQQKRETTSEAMSQKASEEGSTGEPGQPRPPPAVSSQNAKAE
                     DVPVPSEGDPNARLPPLTAPKPRKLPPNIVLKSSRGGFHSDPQNRLSCHSEAGPGDSG
                     PTSSSLQEQRRARREALEKLGLPQDQDEASTHLSKPSIWLRETRTQAPSPAPPVVPAQ
                     VSAATGKAPALAPMWGPSPVKAPGPAPAQPSSPGNVLVPAQEPTPGKVPADKSMPIPI
                     PKAPEANSPLTQPKPDSGLTLQESSIPGLRQMNFKSNTLERSGVGLSSYLSAEKDCSP
                     KTSTSLGKGSFLDKISHKVLRNSRPRPASLGTRKDFEGIQVGKLADPEHELGSKHLSY
                     QGQSRDMLPRSHCVSVKISPKGVSDEKRREALKKLGLLKK"
     misc_feature    322..1995
                     /gene="C1H1orf116"
                     /note="Specifically androgen-regulated gene protein;
                     Region: SARG; pfam15385"
                     /db_xref="CDD:464692"
ORIGIN      
        1 gccaaattgc cgccatcacc gggatcgccc ccggctgtca gcgaatcctc gtaggatacc
       61 cgcccgagtg cctggacctc agcaacgggg ataccattct gggggatttg cccattcagt
      121 caggcccggc ctgggacatt cttcgcttcc cttcgcttcc cctctgagag cccctttcac
      181 cacccctgca ccttgcttca ggcgatgccc gagagagagc tgtggccagc agggcctggc
      241 ttggaacccg tgacccacat tggcagctgc gatagcatga tgagcaccac ctccaccctc
      301 tctggatcta gtgacagcag ctacgacttc ctgtccgctg aagagaagga gtgtctgctc
      361 ttcttagaga aaaccattgg ctcattggac accgaggctg acggtggact gtccactgac
      421 aagtctgggc aagccacaac tccccaaggt ccccgaacac tgcccacgac ccagcctgcc
      481 gcccagggac atccgaaaga gaccgttcag caaggaacag agccaaaaag agtgactcca
      541 ttcagcttgt ctcatctgcc tgagcctcaa agcctgggcc tcaggtctgg ctcctgcagc
      601 ctccccagaa atatccacat cggcagaaac cagatcctca gaaaaagcac cacacagact
      661 aacagccaca ccccaggggt atctgacgag cttgtcccag ggcctgagaa agagcaggtg
      721 ggccagagca gtgagccccc ccaggcaccg acgggccccc gggacgctgc ccttgatctg
      781 gacagagctt tcatcccccc accagaggcc ttccgggaca cccagccaga gcagcgtggg
      841 caacgcggcc tgcccagaca gccaggggag ctgagtccca ggctccaggt ccacacatca
      901 ctcagcctcc agcaaaaaag ggagaccact tcagaggcca tgtcccagaa agccagtgag
      961 gaaggctcaa ccggggaacc tggacaacct cggcctcctc cagctgtgtc ctctcagaat
     1021 gcaaaagctg aagatgttcc tgtcccatca gagggggatc caaatgcccg gctgcctccc
     1081 ctcacagccc ctaagccacg gaagctgcca ccaaatattg ttctgaagag cagccggggt
     1141 ggtttccaca gtgatcccca gaaccggctg tcttgccact cggaggctgg ccctggagac
     1201 tcgggcccca cctcgtcatc actgcaggag cagaggagag cacgcaggga agcgctggag
     1261 aagctggggc tgccccagga ccaagatgag gccagcaccc acttaagtaa gccctccatc
     1321 tggcttaggg agactcgcac tcaggccccc tccccggctc cacctgtggt tccagctcag
     1381 gtctcagcag cgacaggaaa ggctccagca cttgcaccaa tgtggggacc ttctccagtg
     1441 aaagctccgg gtccggctcc agctcagcca tcttctccag gcaatgtttt ggttcctgcc
     1501 caggaaccca ctccagggaa agttccagct gacaaatcca tgccaattcc tatccctaag
     1561 gccccagagg caaatagtcc cctcactcag ccgaagccag actctgggct gactctccag
     1621 gagagcagca tccctggcct gagacagatg aacttcaagt ccaacacgct ggagcgttca
     1681 ggcgtggggc tgagcagcta cctctcagca gagaaagatt gcagccccaa aaccagcacc
     1741 tctctgggaa aaggctcctt cttggacaag atctcacaca aggtcttgcg taactcgcgg
     1801 ccgcgcccgg cctccttggg caccaggaag gacttcgagg gtatccaggt gggcaagttg
     1861 gccgacccgg agcatgagct gggttccaag cacctgtctt accaaggaca gagccgtgac
     1921 atgctgcctc gatcccactg tgtcagtgtc aagatctccc caaaaggtgt gtctgatgaa
     1981 aaaagaaggg aggctctcaa gaagctgggc ctgttgaaga agtaggcact ggccaccagc
     2041 acccccacac acccctcccg caccccgtta ttcgagaaga gacccagggc tccacttagt
     2101 ctaccccccc tcacaagtca ggggctgggc aggggtcggc ttctctgcag tgtcctcttc
     2161 tctccaaggg agagattgga gcacacattt atattcagag tggctgtacc aatgagtgcc
     2221 tgcgtgaacc accctgaaga tgatttccac aggagggtgt gtgtgtgtgg tataggctgt
     2281 gtctatcact gaagctgttt atatgacaca gagtcattgc tcagaattcc tcacttgttg
     2341 gaaactttct tacatcgggt agagctcagc caagccagaa ctgagtgcag aggggtggct
     2401 aagcctgaga aaaaaaaagt caaatgggac aatggatgta cccgtgacac taggcaaatg
     2461 caggatcaca tgaaatgtgg gtctcccaga acccctgcag tgggtggaga ctggcacaga
     2521 ccttgctgga ttcccctctc acttctggcc tcccggatag gggcctgcgg ccaagaggag
     2581 ttggtttgtt atctcatcat ctgctgggct tctctctgtc cctagtccca aggaccagac
     2641 acatccctgt cactaaaaac tcttggttga ctgataccag gagagctctt gctggcctga
     2701 gaagtcagga tgagtgccca cactgtacac ctccactgga gaggactttg tctgtgggct
     2761 tgttaaattc agtaataaac tacggtggtc tctga
//
LOCUS       XM_032606891            2403 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf116 homolog
            (C1H1orf116), transcript variant X4, mRNA.
ACCESSION   XM_032606891
VERSION     XM_032606891.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2403
                     /gene="C1H1orf116"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740857"
     CDS             89..1633
                     /gene="C1H1orf116"
                     /codon_start=1
                     /product="specifically androgen-regulated gene protein
                     isoform X2"
                     /protein_id="XP_032462782.1"
                     /db_xref="GeneID:116740857"
                     /translation="MTRHPKETVQQGTEPKRVTPFSLSHLPEPQSLGLRSGSCSLPRN
                     IHIGRNQILRKSTTQTNSHTPGVSDELVPGPEKEQVGQSSEPPQAPTGPRDAALDLDR
                     AFIPPPEAFRDTQPEQRGQRGLPRQPGELSPRLQVHTSLSLQQKRETTSEAMSQKASE
                     EGSTGEPGQPRPPPAVSSQNAKAEDVPVPSEGDPNARLPPLTAPKPRKLPPNIVLKSS
                     RGGFHSDPQNRLSCHSEAGPGDSGPTSSSLQEQRRARREALEKLGLPQDQDEASTHLS
                     KPSIWLRETRTQAPSPAPPVVPAQVSAATGKAPALAPMWGPSPVKAPGPAPAQPSSPG
                     NVLVPAQEPTPGKVPADKSMPIPIPKAPEANSPLTQPKPDSGLTLQESSIPGLRQMNF
                     KSNTLERSGVGLSSYLSAEKDCSPKTSTSLGKGSFLDKISHKVLRNSRPRPASLGTRK
                     DFEGIQVGKLADPEHELGSKHLSYQGQSRDMLPRSHCVSVKISPKGVSDEKRREALKK
                     LGLLKK"
     misc_feature    98..1603
                     /gene="C1H1orf116"
                     /note="Specifically androgen-regulated gene protein;
                     Region: SARG; pfam15385"
                     /db_xref="CDD:464692"
ORIGIN      
        1 agggctccct taacttcagt gggtgacgtc tcaagggcct tgtgagagag tatggagtgg
       61 cgttgaggct cagtagacgg gaaacaagat gacacgacat ccgaaagaga ccgttcagca
      121 aggaacagag ccaaaaagag tgactccatt cagcttgtct catctgcctg agcctcaaag
      181 cctgggcctc aggtctggct cctgcagcct ccccagaaat atccacatcg gcagaaacca
      241 gatcctcaga aaaagcacca cacagactaa cagccacacc ccaggggtat ctgacgagct
      301 tgtcccaggg cctgagaaag agcaggtggg ccagagcagt gagccccccc aggcaccgac
      361 gggcccccgg gacgctgccc ttgatctgga cagagctttc atccccccac cagaggcctt
      421 ccgggacacc cagccagagc agcgtgggca acgcggcctg cccagacagc caggggagct
      481 gagtcccagg ctccaggtcc acacatcact cagcctccag caaaaaaggg agaccacttc
      541 agaggccatg tcccagaaag ccagtgagga aggctcaacc ggggaacctg gacaacctcg
      601 gcctcctcca gctgtgtcct ctcagaatgc aaaagctgaa gatgttcctg tcccatcaga
      661 gggggatcca aatgcccggc tgcctcccct cacagcccct aagccacgga agctgccacc
      721 aaatattgtt ctgaagagca gccggggtgg tttccacagt gatccccaga accggctgtc
      781 ttgccactcg gaggctggcc ctggagactc gggccccacc tcgtcatcac tgcaggagca
      841 gaggagagca cgcagggaag cgctggagaa gctggggctg ccccaggacc aagatgaggc
      901 cagcacccac ttaagtaagc cctccatctg gcttagggag actcgcactc aggccccctc
      961 cccggctcca cctgtggttc cagctcaggt ctcagcagcg acaggaaagg ctccagcact
     1021 tgcaccaatg tggggacctt ctccagtgaa agctccgggt ccggctccag ctcagccatc
     1081 ttctccaggc aatgttttgg ttcctgccca ggaacccact ccagggaaag ttccagctga
     1141 caaatccatg ccaattccta tccctaaggc cccagaggca aatagtcccc tcactcagcc
     1201 gaagccagac tctgggctga ctctccagga gagcagcatc cctggcctga gacagatgaa
     1261 cttcaagtcc aacacgctgg agcgttcagg cgtggggctg agcagctacc tctcagcaga
     1321 gaaagattgc agccccaaaa ccagcacctc tctgggaaaa ggctccttct tggacaagat
     1381 ctcacacaag gtcttgcgta actcgcggcc gcgcccggcc tccttgggca ccaggaagga
     1441 cttcgagggt atccaggtgg gcaagttggc cgacccggag catgagctgg gttccaagca
     1501 cctgtcttac caaggacaga gccgtgacat gctgcctcga tcccactgtg tcagtgtcaa
     1561 gatctcccca aaaggtgtgt ctgatgaaaa aagaagggag gctctcaaga agctgggcct
     1621 gttgaagaag taggcactgg ccaccagcac ccccacacac ccctcccgca ccccgttatt
     1681 cgagaagaga cccagggctc cacttagtct accccccctc acaagtcagg ggctgggcag
     1741 gggtcggctt ctctgcagtg tcctcttctc tccaagggag agattggagc acacatttat
     1801 attcagagtg gctgtaccaa tgagtgcctg cgtgaaccac cctgaagatg atttccacag
     1861 gagggtgtgt gtgtgtggta taggctgtgt ctatcactga agctgtttat atgacacaga
     1921 gtcattgctc agaattcctc acttgttgga aactttctta catcgggtag agctcagcca
     1981 agccagaact gagtgcagag gggtggctaa gcctgagaaa aaaaaagtca aatgggacaa
     2041 tggatgtacc cgtgacacta ggcaaatgca ggatcacatg aaatgtgggt ctcccagaac
     2101 ccctgcagtg ggtggagact ggcacagacc ttgctggatt cccctctcac ttctggcctc
     2161 ccggataggg gcctgcggcc aagaggagtt ggtttgttat ctcatcatct gctgggcttc
     2221 tctctgtccc tagtcccaag gaccagacac atccctgtca ctaaaaactc ttggttgact
     2281 gataccagga gagctcttgc tggcctgaga agtcaggatg agtgcccaca ctgtacacct
     2341 ccactggaga ggactttgtc tgtgggcttg ttaaattcag taataaacta cggtggtctc
     2401 tga
//
LOCUS       XM_032606899            2600 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf116 homolog
            (C1H1orf116), transcript variant X5, mRNA.
ACCESSION   XM_032606899
VERSION     XM_032606899.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2600
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2600
                     /gene="C1H1orf116"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116740857"
     CDS             745..1830
                     /gene="C1H1orf116"
                     /codon_start=1
                     /product="specifically androgen-regulated gene protein
                     isoform X3"
                     /protein_id="XP_032462790.1"
                     /db_xref="GeneID:116740857"
                     /translation="MSQKASEEGSTGEPGQPRPPPAVSSQNAKAEDVPVPSEGDPNAR
                     LPPLTAPKPRKLPPNIVLKSSRGGFHSDPQNRLSCHSEAGPGDSGPTSSSLQEQRRAR
                     REALEKLGLPQDQDEASTHLSKPSIWLRETRTQAPSPAPPVVPAQVSAATGKAPALAP
                     MWGPSPVKAPGPAPAQPSSPGNVLVPAQEPTPGKVPADKSMPIPIPKAPEANSPLTQP
                     KPDSGLTLQESSIPGLRQMNFKSNTLERSGVGLSSYLSAEKDCSPKTSTSLGKGSFLD
                     KISHKVLRNSRPRPASLGTRKDFEGIQVGKLADPEHELGSKHLSYQGQSRDMLPRSHC
                     VSVKISPKGVSDEKRREALKKLGLLKK"
     misc_feature    <745..1800
                     /gene="C1H1orf116"
                     /note="Specifically androgen-regulated gene protein;
                     Region: SARG; pfam15385"
                     /db_xref="CDD:464692"
ORIGIN      
        1 ggagaggtca aaagaagaac agtaggaagc aggggaagca gtctctgtct ccgtctctgc
       61 cctttgaagt ataagggtat tcctttcctc tcttcagccc cccgcccagt gaagagtgac
      121 agcagctacg acttcctgtc cgctgaagag aaggagtgtc tgctcttctt agagaaaacc
      181 attggctcat tggacaccga ggctgacggt ggactgtcca ctgacaagtc tgggcaagcc
      241 acaactcccc aaggtccccg aacactgccc acgacccagc ctgccgccca gggacatccg
      301 aaagagaccg ttcagcaagg aacagagcca aaaagagtga ctccattcag cttgtctcat
      361 ctgcctgagc ctcaaagcct gggcctcagg tctggctcct gcagcctccc cagaaatatc
      421 cacatcggca gaaaccagat cctcagaaaa agcaccacac agactaacag ccacacccca
      481 ggggtatctg acgagcttgt cccagggcct gagaaagagc aggtgggcca gagcagtgag
      541 cccccccagg caccgacggg cccccgggac gctgcccttg atctggacag agctttcatc
      601 cccccaccag aggccttccg ggacacccag ccagagcagc gtgggcaacg cggcctgccc
      661 agacagccag gggagctgag tcccaggctc caggtccaca catcactcag cctccagcaa
      721 aaaagggaga ccacttcaga ggccatgtcc cagaaagcca gtgaggaagg ctcaaccggg
      781 gaacctggac aacctcggcc tcctccagct gtgtcctctc agaatgcaaa agctgaagat
      841 gttcctgtcc catcagaggg ggatccaaat gcccggctgc ctcccctcac agcccctaag
      901 ccacggaagc tgccaccaaa tattgttctg aagagcagcc ggggtggttt ccacagtgat
      961 ccccagaacc ggctgtcttg ccactcggag gctggccctg gagactcggg ccccacctcg
     1021 tcatcactgc aggagcagag gagagcacgc agggaagcgc tggagaagct ggggctgccc
     1081 caggaccaag atgaggccag cacccactta agtaagccct ccatctggct tagggagact
     1141 cgcactcagg ccccctcccc ggctccacct gtggttccag ctcaggtctc agcagcgaca
     1201 ggaaaggctc cagcacttgc accaatgtgg ggaccttctc cagtgaaagc tccgggtccg
     1261 gctccagctc agccatcttc tccaggcaat gttttggttc ctgcccagga acccactcca
     1321 gggaaagttc cagctgacaa atccatgcca attcctatcc ctaaggcccc agaggcaaat
     1381 agtcccctca ctcagccgaa gccagactct gggctgactc tccaggagag cagcatccct
     1441 ggcctgagac agatgaactt caagtccaac acgctggagc gttcaggcgt ggggctgagc
     1501 agctacctct cagcagagaa agattgcagc cccaaaacca gcacctctct gggaaaaggc
     1561 tccttcttgg acaagatctc acacaaggtc ttgcgtaact cgcggccgcg cccggcctcc
     1621 ttgggcacca ggaaggactt cgagggtatc caggtgggca agttggccga cccggagcat
     1681 gagctgggtt ccaagcacct gtcttaccaa ggacagagcc gtgacatgct gcctcgatcc
     1741 cactgtgtca gtgtcaagat ctccccaaaa ggtgtgtctg atgaaaaaag aagggaggct
     1801 ctcaagaagc tgggcctgtt gaagaagtag gcactggcca ccagcacccc cacacacccc
     1861 tcccgcaccc cgttattcga gaagagaccc agggctccac ttagtctacc ccccctcaca
     1921 agtcaggggc tgggcagggg tcggcttctc tgcagtgtcc tcttctctcc aagggagaga
     1981 ttggagcaca catttatatt cagagtggct gtaccaatga gtgcctgcgt gaaccaccct
     2041 gaagatgatt tccacaggag ggtgtgtgtg tgtggtatag gctgtgtcta tcactgaagc
     2101 tgtttatatg acacagagtc attgctcaga attcctcact tgttggaaac tttcttacat
     2161 cgggtagagc tcagccaagc cagaactgag tgcagagggg tggctaagcc tgagaaaaaa
     2221 aaagtcaaat gggacaatgg atgtacccgt gacactaggc aaatgcagga tcacatgaaa
     2281 tgtgggtctc ccagaacccc tgcagtgggt ggagactggc acagaccttg ctggattccc
     2341 ctctcacttc tggcctcccg gataggggcc tgcggccaag aggagttggt ttgttatctc
     2401 atcatctgct gggcttctct ctgtccctag tcccaaggac cagacacatc cctgtcacta
     2461 aaaactcttg gttgactgat accaggagag ctcttgctgg cctgagaagt caggatgagt
     2521 gcccacactg tacacctcca ctggagagga ctttgtctgt gggcttgtta aattcagtaa
     2581 taaactacgg tggtctctga
//
LOCUS       XM_032606908            2536 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf116 homolog
            (C1H1orf116), transcript variant X6, mRNA.
ACCESSION   XM_032606908
VERSION     XM_032606908.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2536
                     /gene="C1H1orf116"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740857"
     CDS             681..1766
                     /gene="C1H1orf116"
                     /codon_start=1
                     /product="specifically androgen-regulated gene protein
                     isoform X3"
                     /protein_id="XP_032462799.1"
                     /db_xref="GeneID:116740857"
                     /translation="MSQKASEEGSTGEPGQPRPPPAVSSQNAKAEDVPVPSEGDPNAR
                     LPPLTAPKPRKLPPNIVLKSSRGGFHSDPQNRLSCHSEAGPGDSGPTSSSLQEQRRAR
                     REALEKLGLPQDQDEASTHLSKPSIWLRETRTQAPSPAPPVVPAQVSAATGKAPALAP
                     MWGPSPVKAPGPAPAQPSSPGNVLVPAQEPTPGKVPADKSMPIPIPKAPEANSPLTQP
                     KPDSGLTLQESSIPGLRQMNFKSNTLERSGVGLSSYLSAEKDCSPKTSTSLGKGSFLD
                     KISHKVLRNSRPRPASLGTRKDFEGIQVGKLADPEHELGSKHLSYQGQSRDMLPRSHC
                     VSVKISPKGVSDEKRREALKKLGLLKK"
     misc_feature    <681..1736
                     /gene="C1H1orf116"
                     /note="Specifically androgen-regulated gene protein;
                     Region: SARG; pfam15385"
                     /db_xref="CDD:464692"
ORIGIN      
        1 agttgccagg gtggggtgag gcagcgcgga tgaagacttt acctgtctag agtgacagca
       61 gctacgactt cctgtccgct gaagagaagg agtgtctgct cttcttagag aaaaccattg
      121 gctcattgga caccgaggct gacggtggac tgtccactga caagtctggg caagccacaa
      181 ctccccaagg tccccgaaca ctgcccacga cccagcctgc cgcccaggga catccgaaag
      241 agaccgttca gcaaggaaca gagccaaaaa gagtgactcc attcagcttg tctcatctgc
      301 ctgagcctca aagcctgggc ctcaggtctg gctcctgcag cctccccaga aatatccaca
      361 tcggcagaaa ccagatcctc agaaaaagca ccacacagac taacagccac accccagggg
      421 tatctgacga gcttgtccca gggcctgaga aagagcaggt gggccagagc agtgagcccc
      481 cccaggcacc gacgggcccc cgggacgctg cccttgatct ggacagagct ttcatccccc
      541 caccagaggc cttccgggac acccagccag agcagcgtgg gcaacgcggc ctgcccagac
      601 agccagggga gctgagtccc aggctccagg tccacacatc actcagcctc cagcaaaaaa
      661 gggagaccac ttcagaggcc atgtcccaga aagccagtga ggaaggctca accggggaac
      721 ctggacaacc tcggcctcct ccagctgtgt cctctcagaa tgcaaaagct gaagatgttc
      781 ctgtcccatc agagggggat ccaaatgccc ggctgcctcc cctcacagcc cctaagccac
      841 ggaagctgcc accaaatatt gttctgaaga gcagccgggg tggtttccac agtgatcccc
      901 agaaccggct gtcttgccac tcggaggctg gccctggaga ctcgggcccc acctcgtcat
      961 cactgcagga gcagaggaga gcacgcaggg aagcgctgga gaagctgggg ctgccccagg
     1021 accaagatga ggccagcacc cacttaagta agccctccat ctggcttagg gagactcgca
     1081 ctcaggcccc ctccccggct ccacctgtgg ttccagctca ggtctcagca gcgacaggaa
     1141 aggctccagc acttgcacca atgtggggac cttctccagt gaaagctccg ggtccggctc
     1201 cagctcagcc atcttctcca ggcaatgttt tggttcctgc ccaggaaccc actccaggga
     1261 aagttccagc tgacaaatcc atgccaattc ctatccctaa ggccccagag gcaaatagtc
     1321 ccctcactca gccgaagcca gactctgggc tgactctcca ggagagcagc atccctggcc
     1381 tgagacagat gaacttcaag tccaacacgc tggagcgttc aggcgtgggg ctgagcagct
     1441 acctctcagc agagaaagat tgcagcccca aaaccagcac ctctctggga aaaggctcct
     1501 tcttggacaa gatctcacac aaggtcttgc gtaactcgcg gccgcgcccg gcctccttgg
     1561 gcaccaggaa ggacttcgag ggtatccagg tgggcaagtt ggccgacccg gagcatgagc
     1621 tgggttccaa gcacctgtct taccaaggac agagccgtga catgctgcct cgatcccact
     1681 gtgtcagtgt caagatctcc ccaaaaggtg tgtctgatga aaaaagaagg gaggctctca
     1741 agaagctggg cctgttgaag aagtaggcac tggccaccag cacccccaca cacccctccc
     1801 gcaccccgtt attcgagaag agacccaggg ctccacttag tctacccccc ctcacaagtc
     1861 aggggctggg caggggtcgg cttctctgca gtgtcctctt ctctccaagg gagagattgg
     1921 agcacacatt tatattcaga gtggctgtac caatgagtgc ctgcgtgaac caccctgaag
     1981 atgatttcca caggagggtg tgtgtgtgtg gtataggctg tgtctatcac tgaagctgtt
     2041 tatatgacac agagtcattg ctcagaattc ctcacttgtt ggaaactttc ttacatcggg
     2101 tagagctcag ccaagccaga actgagtgca gaggggtggc taagcctgag aaaaaaaaag
     2161 tcaaatggga caatggatgt acccgtgaca ctaggcaaat gcaggatcac atgaaatgtg
     2221 ggtctcccag aacccctgca gtgggtggag actggcacag accttgctgg attcccctct
     2281 cacttctggc ctcccggata ggggcctgcg gccaagagga gttggtttgt tatctcatca
     2341 tctgctgggc ttctctctgt ccctagtccc aaggaccaga cacatccctg tcactaaaaa
     2401 ctcttggttg actgatacca ggagagctct tgctggcctg agaagtcagg atgagtgccc
     2461 acactgtaca cctccactgg agaggacttt gtctgtgggc ttgttaaatt cagtaataaa
     2521 ctacggtggt ctctga
//
LOCUS       XM_032606921            3940 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X1, mRNA.
ACCESSION   XM_032606921
VERSION     XM_032606921.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3940
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 36 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740884"
     CDS             151..1755
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X1"
                     /protein_id="XP_032462812.1"
                     /db_xref="GeneID:116740884"
                     /translation="MSGNSAPSSEQNNNYETKTNLRMSEKKCSWASYMTNSPTLIVMI
                     GLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSYDFFRHDNEEAMKIR
                     KQCALVALEDVKAYLTEDSGQIAVFDATNTTRERRALILNFAEENSFKVFFVESVCDD
                     PDVIAANILEVKVSSPDYPERNRENVMEDFLKRIECYKVTYQPLDPDNYDKDLSFIKV
                     INVGQRFLVNKVQDYIQSKIVYYLMNIHVHPRTIYLCRHGESEFNLLGKIGGDSGLSV
                     RGKQFAQALRKFLEEQEIADLKVWTSQLKRTIQTAESLGVTYEQWKILNEIDAGVCEE
                     MTYAEIKERYPDEFALRDEEKYLYRYPGGESYQDLVQRLEPVIMELERQGNVLVISHQ
                     AVMRCLLAYFLDKGADELPYLRCPLHTIFKLTPVAYGCKVETIKLNVEAVNTHRDKPT
                     NNFPKNQTPVRMRRNSFTPLSSSNTVRRPRNYSVGSRPLKPLSPLRALDMQEGADQPK
                     TQVSIPAETSLAVHRLSSPASPPLLS"
     misc_feature    226..897
                     /gene="PFKFB2"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    904..1455
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 ttggtggacg attctctcca ggtgagggcc aacgcgagag tgggcggagc caggcagggc
       61 acgtgattcg ccggagactg gtgtgccgga ccccggccac cgtgtcggct cctggctgta
      121 tcgttaccgg gcatcccctg aagagctgcc atgtctggga attctgcccc ttcgtcagaa
      181 cagaacaaca actatgaaac gaaaacaaat ctacgaatgt cagagaagaa atgttcgtgg
      241 gcatcctaca tgaccaactc cccgaccctc attgttatga ttggcttacc agcccggggc
      301 aaaacctacg tgtccaagaa actcacacgc tacctcaact ggattggggt gcccaccaaa
      361 gtgtttaatc ttggggtgta tcggcgtcaa gcggtcaagt cctataaatc ctatgacttc
      421 ttccggcatg acaacgagga ggccatgaag atacgcaaac agtgtgctct ggtggcgctg
      481 gaggatgtga aggcgtatct cacggaggac agtgggcaga ttgcggtgtt tgatgctacc
      541 aataccactc gagagaggag ggccttgatt ctgaactttg ccgaggagaa ttccttcaag
      601 gtgttctttg tggaatctgt ctgcgatgat cccgatgtca ttgctgccaa catcctggaa
      661 gtaaaggtgt cgagccctga ctaccctgaa aggaacaggg agaatgtgat ggaggacttc
      721 ctaaagagaa ttgagtgcta caaagtcacc tatcaacccc ttgacccaga caactatgac
      781 aaggatcttt ctttcatcaa ggtgataaac gtgggccagc gatttctagt gaacaaagtc
      841 caggactaca tccagagcaa gatcgtctac tacctcatga atatccatgt ccatcctcgc
      901 accatttacc tttgccggca cggagagagc gagttcaatc tcttgggaaa gattgggggt
      961 gactcaggcc tctccgtgcg gggaaaacag tttgcccagg ctctaaggaa gtttctggag
     1021 gaacaggaga tagcagacct caaagtgtgg acaagtcagt tgaagaggac tatccagacc
     1081 gctgaatctc tgggggtgac ctatgagcag tggaagattc tgaatgagat tgatgctggc
     1141 gtgtgcgagg agatgactta tgcggagatt aaggagcggt acccagacga gtttgcgctt
     1201 cgagatgaag agaaatacct gtatcgatat cctggagggg agtcatacca ggacctggta
     1261 cagcggctgg agcctgtcat catggagctg gagcgtcagg gcaacgtcct cgtcatctcc
     1321 caccaggctg tcatgcgctg cctcctggcc tacttcttgg acaagggtgc agatgagcta
     1381 ccgtacctga ggtgccctct ccataccatc ttcaaactta ctcctgtagc ctacggctgc
     1441 aaagtggaaa caattaaact taacgtggag gctgtgaaca ctcaccgtga caagccaact
     1501 aacaacttcc ccaagaacca aacccctgta aggatgagaa ggaacagctt tacgcctctg
     1561 tccagttcga atacagtaag gcgtccgaga aattacagtg ttgggagccg gcccctcaag
     1621 cccctcagcc ctctccgtgc cctggacatg caagaagggg ccgaccagcc gaagacccaa
     1681 gtcagcattc cggcggagac ctcgctggct gtgcataggc tctcctctcc ggcctccccc
     1741 ccattgctct cctgatgatg tgaaggctga ggccagacct gtccgggaga ctggcctact
     1801 gaaaaacttg gcatgtcagc tccaaagggg cttgaacagg aagttcagtg gggattggac
     1861 attcggggcc acccaaatga gccctgaaaa agctgcacca catttcttcc cctcatgcct
     1921 aatgggaata tcagttacac tgtaaaactt gacttccctg tgcctcaaaa catttcacag
     1981 cctgaaccaa tttcgttttg atcatttctt tgctaggttt ggcccaagtt ggtcaatcct
     2041 gttccatttt ggcatttaac atctgacctg tgactgtatc cctagctggc tttctttgcc
     2101 tagtgtgcaa atgtacctct tcagatttaa ttgttcccaa gtgagagggc tgaactccag
     2161 caaaccattt ctgtgctgta agagctggtc tctacatcca ctacaagtgc gcaggctagg
     2221 gtacaatata cataggtttg cggtcacttt tttgtcacat tggaaacgag acaaattcac
     2281 caggtgaatg gagggtatct gagaaattca gtccctaaaa cgtctcttct gcggtgacgg
     2341 aagagcagcg ttagtagcca tctttttgtt tagagaagtt tttcttgttt caggcccctt
     2401 gagggcagga tctgactaca agactccaca aaatatgtac ccttcttctg agttctcttt
     2461 tgtagctact gtattttcta cctgatactg tgtgcctctc aaagctgaag agggctgacg
     2521 tcatcctctc tcgtggttcg aaatgagggc tggagagaaa agtagggtgc catttggatc
     2581 acatgaagaa gtaaaagaag tttccttggg aatcaactct cccaaggagt tcttttggtt
     2641 tcagaacagg tgcagggaga catgcccttc tgtggggtct gctaccgtga tgcggtctct
     2701 aagaaagctg tggttatgac ttcaagagca tctggtcttc taatcccttc ctcttagcta
     2761 attgtcacta ttgtggtcta ctgttctctt atgtagaacc ttggaggaat gggatggggg
     2821 ggaaccaagc cctcaatgca ttaatcatgt ggtttccctt aaagataaac caggtaatta
     2881 ttccttagat cagtgattgt caaatgtata aatatgtccc tgcagatgtg attttaatac
     2941 gtcactgctc ctgaaggaag gcatggaagc tcccaaggat actatatctt acaagcaaaa
     3001 tctttttttt tttaaaaaaa gaatagtaag ttattagctt tttaaatttt ttcccccttt
     3061 tcattcggat gcccacttgc tggtcaagag ggtgagtagc aagaagatgc aatgcaattt
     3121 tcccaaatgg ttcttgtata ctgtggatga tacaggaccc tgttacctaa gatgtgatgt
     3181 gctgggctgc tggcagttca gcaaccaact aggagcttat ttcaggtaat tttcatctag
     3241 ctgctcatag catgttgtgc tgtaatgatt ttgttcttgt gatgcaggtt tctttctgca
     3301 tctaaataca ccgtcttttg atgatctgat aaatgttttt atttagttat ttattcatcc
     3361 atgtaaggtt tttttttgtt ttttgttttt tttgcggtac gcgggcctct tactgctgcg
     3421 gcctctcccg ttgcggagca caggctccgg acgcgcaggc tcagcggcca tggcccacgg
     3481 gcccagccgc tccgcggcat gtgggatcct cctggaccgg ggcatgaact cgtgtcccct
     3541 gcatcggcag gcagactccc aaccactgcg ccaccaggga agcccatgta aggtattttt
     3601 aagtccccat attaatatct gcatgtattt aatcagaatg taaggtaatt tgtgtttggt
     3661 agaaatttag atattttgag tgtttaaagt ccatagtatt accttaaatt aaaatttcag
     3721 aatgtaggta tccgtcttct gtaaaaggat aataactgtg tgaaggcaca gtggatttct
     3781 tttgaatact tttttttttc attgattttt attataagta taaaccaaga gatacatttc
     3841 tctggagaaa agtttacctc ctggataaat aagattgtgc taaaatttgt gaataatatg
     3901 tattgctttt gtaataagaa atgtaataaa agttattttt
//
LOCUS       XM_032606929            5200 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X2, mRNA.
ACCESSION   XM_032606929
VERSION     XM_032606929.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5200
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5200
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 41 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740884"
     CDS             169..1719
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X2"
                     /protein_id="XP_032462820.1"
                     /db_xref="GeneID:116740884"
                     /translation="MSGNSAPSSEQNNNYETKTNLRMSEKKCSWASYMTNSPTLIVMI
                     GLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSYDFFRHDNEEAMKIR
                     KQCALVALEDVKAYLTEDSGQIAVFDATNTTRERRALILNFAEENSFKVFFVESVCDD
                     PDVIAANILEVKVSSPDYPERNRENVMEDFLKRIECYKVTYQPLDPDNYDKDLSFIKV
                     INVGQRFLVNKVQDYIQSKIVYYLMNIHVHPRTIYLCRHGESEFNLLGKIGGDSGLSV
                     RGKQFAQALRKFLEEQEIADLKVWTSQLKRTIQTAESLGVTYEQWKILNEIDAGVCEE
                     MTYAEIKERYPDEFALRDEEKYLYRYPGGESYQDLVQRLEPVIMELERQGNVLVISHQ
                     AVMRCLLAYFLDKGADELPYLRCPLHTIFKLTPVAYGCKVETIKLNVEAVNTHRDKPT
                     NNFPKNQTPVRMRRNSFTPLSSSNTVRRPRNYSVGSRPLKPLSPLRALDMQEGADQPK
                     TQVSIPVV"
     misc_feature    244..915
                     /gene="PFKFB2"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    922..1473
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 cttgaagggg ttaggcgggc gagagaaggg gggctgcgtg caccctgatg aggagcggga
       61 agatgaagcc tagctgtttc ggggaagtgc gggcccccag gcattgccgg agtgcggacg
      121 tttagggacc cagagccgca gctgacgtgc atcccctgaa gagctgccat gtctgggaat
      181 tctgcccctt cgtcagaaca gaacaacaac tatgaaacga aaacaaatct acgaatgtca
      241 gagaagaaat gttcgtgggc atcctacatg accaactccc cgaccctcat tgttatgatt
      301 ggcttaccag cccggggcaa aacctacgtg tccaagaaac tcacacgcta cctcaactgg
      361 attggggtgc ccaccaaagt gtttaatctt ggggtgtatc ggcgtcaagc ggtcaagtcc
      421 tataaatcct atgacttctt ccggcatgac aacgaggagg ccatgaagat acgcaaacag
      481 tgtgctctgg tggcgctgga ggatgtgaag gcgtatctca cggaggacag tgggcagatt
      541 gcggtgtttg atgctaccaa taccactcga gagaggaggg ccttgattct gaactttgcc
      601 gaggagaatt ccttcaaggt gttctttgtg gaatctgtct gcgatgatcc cgatgtcatt
      661 gctgccaaca tcctggaagt aaaggtgtcg agccctgact accctgaaag gaacagggag
      721 aatgtgatgg aggacttcct aaagagaatt gagtgctaca aagtcaccta tcaacccctt
      781 gacccagaca actatgacaa ggatctttct ttcatcaagg tgataaacgt gggccagcga
      841 tttctagtga acaaagtcca ggactacatc cagagcaaga tcgtctacta cctcatgaat
      901 atccatgtcc atcctcgcac catttacctt tgccggcacg gagagagcga gttcaatctc
      961 ttgggaaaga ttgggggtga ctcaggcctc tccgtgcggg gaaaacagtt tgcccaggct
     1021 ctaaggaagt ttctggagga acaggagata gcagacctca aagtgtggac aagtcagttg
     1081 aagaggacta tccagaccgc tgaatctctg ggggtgacct atgagcagtg gaagattctg
     1141 aatgagattg atgctggcgt gtgcgaggag atgacttatg cggagattaa ggagcggtac
     1201 ccagacgagt ttgcgcttcg agatgaagag aaatacctgt atcgatatcc tggaggggag
     1261 tcataccagg acctggtaca gcggctggag cctgtcatca tggagctgga gcgtcagggc
     1321 aacgtcctcg tcatctccca ccaggctgtc atgcgctgcc tcctggccta cttcttggac
     1381 aagggtgcag atgagctacc gtacctgagg tgccctctcc ataccatctt caaacttact
     1441 cctgtagcct acggctgcaa agtggaaaca attaaactta acgtggaggc tgtgaacact
     1501 caccgtgaca agccaactaa caacttcccc aagaaccaaa cccctgtaag gatgagaagg
     1561 aacagcttta cgcctctgtc cagttcgaat acagtaaggc gtccgagaaa ttacagtgtt
     1621 gggagccggc ccctcaagcc cctcagccct ctccgtgccc tggacatgca agaaggggcc
     1681 gaccagccga agacccaagt cagcattccg gtggtgtaac cgtgtgtctc cctcccatcc
     1741 tggcctcctg cccttgtcac taatcaccaa ggagtcattt aacttccagc tcccacctcc
     1801 ccaccccgac ccccaccagc cccacactgt ggatcttagc agagaatgtg aggtcacgtg
     1861 tttccagacc aaccttagct agtgtacggt gtgagacatc tcctcgccca ggggcaagct
     1921 ggcgagttgg gtgttttagg acaggtcctc agtctggggg ggggtctgga ggaggaggaa
     1981 aagggatcca ctctcctggg gtgattggca gagctggggc tggggctgag gctgagcatg
     2041 ccgtggttct tgtccatcca cagtgtctaa actcactaat gtccttgtgt tggtaaagtg
     2101 ggggcagggt ggagggggac acagaagccc atttcccctc cacctttgtc tcttccaggt
     2161 gtgctttact cacagtcctg acctgcccgc tttcttcccc cctctcatgt cccctttgga
     2221 ttgcccagtg tgatgcatgg catcgttgtg tgtctgtcta ggagggaagg ggcagtgggt
     2281 gggagagaag tttgccctcc attgatgttc tctgcagtgg gcctagatgg atctggactg
     2341 ggggagcctt tcttttccct tctcccttcc tctcaagcca ggtcctacaa gggtcagccc
     2401 aggctacaga acatccacag gtgctctaga cactgcaggt agacatagga tgagagttct
     2461 tgcctccttt catgcgaaac gatcctaaag tcttcagtac ccggggggaa gctggctttc
     2521 agcctgtgtg aaatatcttg gtttgtattt ttcagacata ggtctctggg ctgcagaggt
     2581 gtgaggtctc tgggctgcag aggagtaagg tttaggagag taggctggcc tctagctctt
     2641 acagggctct tggaggagtg tcatacattt tctccagtgg ttcctggctt ctttgccaac
     2701 tacaggaact ctcctgccaa agccagtgac ctccgggact gttgagaagg acagagttag
     2761 atttaggagt caccgctgag gtttgaattg ctcaagggaa aggcagagaa gagttcacta
     2821 gagctgctag tgaactagta attttcagca cattctagta attctcaaaa tagtctcctt
     2881 tttaagtcaa aaaatttttt gcgtgagcga tttttttccc cagatattgg gaaagcctgg
     2941 tgataaatta aatctccctc actagggtat taatttacat catcttgatg tccagagtag
     3001 tcttagaatc ctgtggggtc tagctgttga ctgtttatgc atttacttgt gtcattttat
     3061 ttttttctgc aaggttatgt ttagagtagg gatccttagc cccttggtgg cccacgatgg
     3121 tatacctccc ccagttttgt atacaaaata tatgaatata cgtatgtgca tttttctgag
     3181 aggtgagtct agagttctcg tgagattttt aaaagagaga gaggactccg taccttaaag
     3241 ttatcaatct gtctcttaga ggtgaccagt gagagcaagt tagctatttg ccaggggtgt
     3301 ttttgtttgg taataggagg ccttttgttg tgcttctcac ctaggaatct tcattagaat
     3361 cccctacaga acttttgaaa catgcacttg cttgtgtcca ctctaggctt aattctgact
     3421 cagtctctgg gattcgggtc tgggcatgca tgtgtttaaa tggcttctct tatgattctg
     3481 aatcatactc caggttagaa ctctattttg tgttgttggg tggagaaaca gtagttcctt
     3541 ggactaagcg tcaacctggg aattctgaat tcctcatggt tttgaaagga cagttccctg
     3601 gagttagatg tgtgaacaga tcacagtact gaatgaagtt acccccccat tgttacttca
     3661 ggcagcagcc tgttccggct ttaacacttt acattgcagg gtgatgtgga acaaatcact
     3721 atgtcgtata aatgtcctat gataatagct gagaatttta agcaccctgg agagaggtac
     3781 tgagataaaa cttgtgggat gataaaggtt atcatcacag gcagctggct tgtgaccttg
     3841 agtcctttat tcctacatcc tgagtaggac atcacagcca atctcaaagg ccacttgcct
     3901 agattctgct ctaaattgcc ttccagacat aaggtaactt cctattcctg tttagccatt
     3961 atataacgtg tacctagtgt ccatgtttgt ggggctttgg gctgggtgga gtggtggtgg
     4021 gagaaggaga caccaaagca gcagaaaagg tccttgccct gaaaaagtta ttttagagaa
     4081 agagcatata atttataata aatgaacatt tgtgaaagag caacacgttg agtctgtaaa
     4141 tgtggacatc gaagtggagt agagattcct tctgactttt ttcttgtcct acatgtatga
     4201 gactaaaagg gttgggaggt gggaatgtcc cccagaatga tgtggtctag gaggtgtgtg
     4261 tgtggtactt ttacaaggtt gtcttgtcta gctttgcttg gctggtggca tctttagccc
     4321 aaatgggcat tcagtctttt ctcttgctgt gaggtgagag tgattcagaa ctaatgcatg
     4381 agaaggagca ttttgatccg agacttggct ttgggctgta cgtactccta gtgagaagcg
     4441 aattctctaa caaactagca ttgttttacc ttgttataaa cccctgcatt agacacaggg
     4501 cactgggatg ttcattgggt tctcagcctg ccgatatttt gccattctcc ccatgtgtta
     4561 ctttgcttcc ccaagaagag gagtgaggcg gtcttataat tctcagattg gacatgagaa
     4621 attagaactt gacaacagca aggatttcag cgttgtttgg tttttagagc aagctccctc
     4681 cagagaagtt tcagcagaaa ggagccagga gagcatagaa tagaagagag ctcttattct
     4741 accttttaga gaattcctgt tccctatctt ttctttcctg tcctcctctc cccttcttat
     4801 ttgaatgtgt gtcggtagta tatacacgtt actctgatta tgtgtttatc acgaatgcta
     4861 gtaagaaagg atgaactcca gagtaccgtt tgctgaggct ttcagctgtg ttatgggaga
     4921 aataggtgaa ggctttagca tttaatctac tggtacaaaa ttaggaaagg aaaaaaatca
     4981 ctgtattatc tttgataatc actgattatc ttttccctgc tttaaaacta aatgaggggc
     5041 ttccctggtg gtgcagtggt tgagagtccg cctgccgatg caggggacgt gggttcgtgc
     5101 ctcggcccgg gaggatccca catgccacgg agcggctgag cctgcgcgcc cgaggcctgt
     5161 gctccgcaac ggtagacgcc acggcagtga gaggcccgcg
//
LOCUS       XM_032606938            5168 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X3, mRNA.
ACCESSION   XM_032606938
VERSION     XM_032606938.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5168
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5168
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 41 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740884"
     CDS             137..1687
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X2"
                     /protein_id="XP_032462829.1"
                     /db_xref="GeneID:116740884"
                     /translation="MSGNSAPSSEQNNNYETKTNLRMSEKKCSWASYMTNSPTLIVMI
                     GLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSYDFFRHDNEEAMKIR
                     KQCALVALEDVKAYLTEDSGQIAVFDATNTTRERRALILNFAEENSFKVFFVESVCDD
                     PDVIAANILEVKVSSPDYPERNRENVMEDFLKRIECYKVTYQPLDPDNYDKDLSFIKV
                     INVGQRFLVNKVQDYIQSKIVYYLMNIHVHPRTIYLCRHGESEFNLLGKIGGDSGLSV
                     RGKQFAQALRKFLEEQEIADLKVWTSQLKRTIQTAESLGVTYEQWKILNEIDAGVCEE
                     MTYAEIKERYPDEFALRDEEKYLYRYPGGESYQDLVQRLEPVIMELERQGNVLVISHQ
                     AVMRCLLAYFLDKGADELPYLRCPLHTIFKLTPVAYGCKVETIKLNVEAVNTHRDKPT
                     NNFPKNQTPVRMRRNSFTPLSSSNTVRRPRNYSVGSRPLKPLSPLRALDMQEGADQPK
                     TQVSIPVV"
     misc_feature    212..883
                     /gene="PFKFB2"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    890..1441
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 tgtgatcttt ctccttcaca gttccaacct tcttccggag ctagcgacag cgagtccgat
       61 ttgagccccg ccccctggag cctgcgggcg ctcgattggt ggacgattct ctccaggcat
      121 cccctgaaga gctgccatgt ctgggaattc tgccccttcg tcagaacaga acaacaacta
      181 tgaaacgaaa acaaatctac gaatgtcaga gaagaaatgt tcgtgggcat cctacatgac
      241 caactccccg accctcattg ttatgattgg cttaccagcc cggggcaaaa cctacgtgtc
      301 caagaaactc acacgctacc tcaactggat tggggtgccc accaaagtgt ttaatcttgg
      361 ggtgtatcgg cgtcaagcgg tcaagtccta taaatcctat gacttcttcc ggcatgacaa
      421 cgaggaggcc atgaagatac gcaaacagtg tgctctggtg gcgctggagg atgtgaaggc
      481 gtatctcacg gaggacagtg ggcagattgc ggtgtttgat gctaccaata ccactcgaga
      541 gaggagggcc ttgattctga actttgccga ggagaattcc ttcaaggtgt tctttgtgga
      601 atctgtctgc gatgatcccg atgtcattgc tgccaacatc ctggaagtaa aggtgtcgag
      661 ccctgactac cctgaaagga acagggagaa tgtgatggag gacttcctaa agagaattga
      721 gtgctacaaa gtcacctatc aaccccttga cccagacaac tatgacaagg atctttcttt
      781 catcaaggtg ataaacgtgg gccagcgatt tctagtgaac aaagtccagg actacatcca
      841 gagcaagatc gtctactacc tcatgaatat ccatgtccat cctcgcacca tttacctttg
      901 ccggcacgga gagagcgagt tcaatctctt gggaaagatt gggggtgact caggcctctc
      961 cgtgcgggga aaacagtttg cccaggctct aaggaagttt ctggaggaac aggagatagc
     1021 agacctcaaa gtgtggacaa gtcagttgaa gaggactatc cagaccgctg aatctctggg
     1081 ggtgacctat gagcagtgga agattctgaa tgagattgat gctggcgtgt gcgaggagat
     1141 gacttatgcg gagattaagg agcggtaccc agacgagttt gcgcttcgag atgaagagaa
     1201 atacctgtat cgatatcctg gaggggagtc ataccaggac ctggtacagc ggctggagcc
     1261 tgtcatcatg gagctggagc gtcagggcaa cgtcctcgtc atctcccacc aggctgtcat
     1321 gcgctgcctc ctggcctact tcttggacaa gggtgcagat gagctaccgt acctgaggtg
     1381 ccctctccat accatcttca aacttactcc tgtagcctac ggctgcaaag tggaaacaat
     1441 taaacttaac gtggaggctg tgaacactca ccgtgacaag ccaactaaca acttccccaa
     1501 gaaccaaacc cctgtaagga tgagaaggaa cagctttacg cctctgtcca gttcgaatac
     1561 agtaaggcgt ccgagaaatt acagtgttgg gagccggccc ctcaagcccc tcagccctct
     1621 ccgtgccctg gacatgcaag aaggggccga ccagccgaag acccaagtca gcattccggt
     1681 ggtgtaaccg tgtgtctccc tcccatcctg gcctcctgcc cttgtcacta atcaccaagg
     1741 agtcatttaa cttccagctc ccacctcccc accccgaccc ccaccagccc cacactgtgg
     1801 atcttagcag agaatgtgag gtcacgtgtt tccagaccaa ccttagctag tgtacggtgt
     1861 gagacatctc ctcgcccagg ggcaagctgg cgagttgggt gttttaggac aggtcctcag
     1921 tctggggggg ggtctggagg aggaggaaaa gggatccact ctcctggggt gattggcaga
     1981 gctggggctg gggctgaggc tgagcatgcc gtggttcttg tccatccaca gtgtctaaac
     2041 tcactaatgt ccttgtgttg gtaaagtggg ggcagggtgg agggggacac agaagcccat
     2101 ttcccctcca cctttgtctc ttccaggtgt gctttactca cagtcctgac ctgcccgctt
     2161 tcttcccccc tctcatgtcc cctttggatt gcccagtgtg atgcatggca tcgttgtgtg
     2221 tctgtctagg agggaagggg cagtgggtgg gagagaagtt tgccctccat tgatgttctc
     2281 tgcagtgggc ctagatggat ctggactggg ggagcctttc ttttcccttc tcccttcctc
     2341 tcaagccagg tcctacaagg gtcagcccag gctacagaac atccacaggt gctctagaca
     2401 ctgcaggtag acataggatg agagttcttg cctcctttca tgcgaaacga tcctaaagtc
     2461 ttcagtaccc ggggggaagc tggctttcag cctgtgtgaa atatcttggt ttgtattttt
     2521 cagacatagg tctctgggct gcagaggtgt gaggtctctg ggctgcagag gagtaaggtt
     2581 taggagagta ggctggcctc tagctcttac agggctcttg gaggagtgtc atacattttc
     2641 tccagtggtt cctggcttct ttgccaacta caggaactct cctgccaaag ccagtgacct
     2701 ccgggactgt tgagaaggac agagttagat ttaggagtca ccgctgaggt ttgaattgct
     2761 caagggaaag gcagagaaga gttcactaga gctgctagtg aactagtaat tttcagcaca
     2821 ttctagtaat tctcaaaata gtctcctttt taagtcaaaa aattttttgc gtgagcgatt
     2881 tttttcccca gatattggga aagcctggtg ataaattaaa tctccctcac tagggtatta
     2941 atttacatca tcttgatgtc cagagtagtc ttagaatcct gtggggtcta gctgttgact
     3001 gtttatgcat ttacttgtgt cattttattt ttttctgcaa ggttatgttt agagtaggga
     3061 tccttagccc cttggtggcc cacgatggta tacctccccc agttttgtat acaaaatata
     3121 tgaatatacg tatgtgcatt tttctgagag gtgagtctag agttctcgtg agatttttaa
     3181 aagagagaga ggactccgta ccttaaagtt atcaatctgt ctcttagagg tgaccagtga
     3241 gagcaagtta gctatttgcc aggggtgttt ttgtttggta ataggaggcc ttttgttgtg
     3301 cttctcacct aggaatcttc attagaatcc cctacagaac ttttgaaaca tgcacttgct
     3361 tgtgtccact ctaggcttaa ttctgactca gtctctggga ttcgggtctg ggcatgcatg
     3421 tgtttaaatg gcttctctta tgattctgaa tcatactcca ggttagaact ctattttgtg
     3481 ttgttgggtg gagaaacagt agttccttgg actaagcgtc aacctgggaa ttctgaattc
     3541 ctcatggttt tgaaaggaca gttccctgga gttagatgtg tgaacagatc acagtactga
     3601 atgaagttac ccccccattg ttacttcagg cagcagcctg ttccggcttt aacactttac
     3661 attgcagggt gatgtggaac aaatcactat gtcgtataaa tgtcctatga taatagctga
     3721 gaattttaag caccctggag agaggtactg agataaaact tgtgggatga taaaggttat
     3781 catcacaggc agctggcttg tgaccttgag tcctttattc ctacatcctg agtaggacat
     3841 cacagccaat ctcaaaggcc acttgcctag attctgctct aaattgcctt ccagacataa
     3901 ggtaacttcc tattcctgtt tagccattat ataacgtgta cctagtgtcc atgtttgtgg
     3961 ggctttgggc tgggtggagt ggtggtggga gaaggagaca ccaaagcagc agaaaaggtc
     4021 cttgccctga aaaagttatt ttagagaaag agcatataat ttataataaa tgaacatttg
     4081 tgaaagagca acacgttgag tctgtaaatg tggacatcga agtggagtag agattccttc
     4141 tgactttttt cttgtcctac atgtatgaga ctaaaagggt tgggaggtgg gaatgtcccc
     4201 cagaatgatg tggtctagga ggtgtgtgtg tggtactttt acaaggttgt cttgtctagc
     4261 tttgcttggc tggtggcatc tttagcccaa atgggcattc agtcttttct cttgctgtga
     4321 ggtgagagtg attcagaact aatgcatgag aaggagcatt ttgatccgag acttggcttt
     4381 gggctgtacg tactcctagt gagaagcgaa ttctctaaca aactagcatt gttttacctt
     4441 gttataaacc cctgcattag acacagggca ctgggatgtt cattgggttc tcagcctgcc
     4501 gatattttgc cattctcccc atgtgttact ttgcttcccc aagaagagga gtgaggcggt
     4561 cttataattc tcagattgga catgagaaat tagaacttga caacagcaag gatttcagcg
     4621 ttgtttggtt tttagagcaa gctccctcca gagaagtttc agcagaaagg agccaggaga
     4681 gcatagaata gaagagagct cttattctac cttttagaga attcctgttc cctatctttt
     4741 ctttcctgtc ctcctctccc cttcttattt gaatgtgtgt cggtagtata tacacgttac
     4801 tctgattatg tgtttatcac gaatgctagt aagaaaggat gaactccaga gtaccgtttg
     4861 ctgaggcttt cagctgtgtt atgggagaaa taggtgaagg ctttagcatt taatctactg
     4921 gtacaaaatt aggaaaggaa aaaaatcact gtattatctt tgataatcac tgattatctt
     4981 ttccctgctt taaaactaaa tgaggggctt ccctggtggt gcagtggttg agagtccgcc
     5041 tgccgatgca ggggacgtgg gttcgtgcct cggcccggga ggatcccaca tgccacggag
     5101 cggctgagcc tgcgcgcccg aggcctgtgc tccgcaacgg tagacgccac ggcagtgaga
     5161 ggcccgcg
//
LOCUS       XM_032606948            5103 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X4, mRNA.
ACCESSION   XM_032606948
VERSION     XM_032606948.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5103
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5103
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 41 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740884"
     CDS             72..1622
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X2"
                     /protein_id="XP_032462839.1"
                     /db_xref="GeneID:116740884"
                     /translation="MSGNSAPSSEQNNNYETKTNLRMSEKKCSWASYMTNSPTLIVMI
                     GLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSYDFFRHDNEEAMKIR
                     KQCALVALEDVKAYLTEDSGQIAVFDATNTTRERRALILNFAEENSFKVFFVESVCDD
                     PDVIAANILEVKVSSPDYPERNRENVMEDFLKRIECYKVTYQPLDPDNYDKDLSFIKV
                     INVGQRFLVNKVQDYIQSKIVYYLMNIHVHPRTIYLCRHGESEFNLLGKIGGDSGLSV
                     RGKQFAQALRKFLEEQEIADLKVWTSQLKRTIQTAESLGVTYEQWKILNEIDAGVCEE
                     MTYAEIKERYPDEFALRDEEKYLYRYPGGESYQDLVQRLEPVIMELERQGNVLVISHQ
                     AVMRCLLAYFLDKGADELPYLRCPLHTIFKLTPVAYGCKVETIKLNVEAVNTHRDKPT
                     NNFPKNQTPVRMRRNSFTPLSSSNTVRRPRNYSVGSRPLKPLSPLRALDMQEGADQPK
                     TQVSIPVV"
     misc_feature    147..818
                     /gene="PFKFB2"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    825..1376
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 cgggtaggtg ctggggccac agcccggagg gatcttagga gggatcctag ggcatcccct
       61 gaagagctgc catgtctggg aattctgccc cttcgtcaga acagaacaac aactatgaaa
      121 cgaaaacaaa tctacgaatg tcagagaaga aatgttcgtg ggcatcctac atgaccaact
      181 ccccgaccct cattgttatg attggcttac cagcccgggg caaaacctac gtgtccaaga
      241 aactcacacg ctacctcaac tggattgggg tgcccaccaa agtgtttaat cttggggtgt
      301 atcggcgtca agcggtcaag tcctataaat cctatgactt cttccggcat gacaacgagg
      361 aggccatgaa gatacgcaaa cagtgtgctc tggtggcgct ggaggatgtg aaggcgtatc
      421 tcacggagga cagtgggcag attgcggtgt ttgatgctac caataccact cgagagagga
      481 gggccttgat tctgaacttt gccgaggaga attccttcaa ggtgttcttt gtggaatctg
      541 tctgcgatga tcccgatgtc attgctgcca acatcctgga agtaaaggtg tcgagccctg
      601 actaccctga aaggaacagg gagaatgtga tggaggactt cctaaagaga attgagtgct
      661 acaaagtcac ctatcaaccc cttgacccag acaactatga caaggatctt tctttcatca
      721 aggtgataaa cgtgggccag cgatttctag tgaacaaagt ccaggactac atccagagca
      781 agatcgtcta ctacctcatg aatatccatg tccatcctcg caccatttac ctttgccggc
      841 acggagagag cgagttcaat ctcttgggaa agattggggg tgactcaggc ctctccgtgc
      901 ggggaaaaca gtttgcccag gctctaagga agtttctgga ggaacaggag atagcagacc
      961 tcaaagtgtg gacaagtcag ttgaagagga ctatccagac cgctgaatct ctgggggtga
     1021 cctatgagca gtggaagatt ctgaatgaga ttgatgctgg cgtgtgcgag gagatgactt
     1081 atgcggagat taaggagcgg tacccagacg agtttgcgct tcgagatgaa gagaaatacc
     1141 tgtatcgata tcctggaggg gagtcatacc aggacctggt acagcggctg gagcctgtca
     1201 tcatggagct ggagcgtcag ggcaacgtcc tcgtcatctc ccaccaggct gtcatgcgct
     1261 gcctcctggc ctacttcttg gacaagggtg cagatgagct accgtacctg aggtgccctc
     1321 tccataccat cttcaaactt actcctgtag cctacggctg caaagtggaa acaattaaac
     1381 ttaacgtgga ggctgtgaac actcaccgtg acaagccaac taacaacttc cccaagaacc
     1441 aaacccctgt aaggatgaga aggaacagct ttacgcctct gtccagttcg aatacagtaa
     1501 ggcgtccgag aaattacagt gttgggagcc ggcccctcaa gcccctcagc cctctccgtg
     1561 ccctggacat gcaagaaggg gccgaccagc cgaagaccca agtcagcatt ccggtggtgt
     1621 aaccgtgtgt ctccctccca tcctggcctc ctgcccttgt cactaatcac caaggagtca
     1681 tttaacttcc agctcccacc tccccacccc gacccccacc agccccacac tgtggatctt
     1741 agcagagaat gtgaggtcac gtgtttccag accaacctta gctagtgtac ggtgtgagac
     1801 atctcctcgc ccaggggcaa gctggcgagt tgggtgtttt aggacaggtc ctcagtctgg
     1861 gggggggtct ggaggaggag gaaaagggat ccactctcct ggggtgattg gcagagctgg
     1921 ggctggggct gaggctgagc atgccgtggt tcttgtccat ccacagtgtc taaactcact
     1981 aatgtccttg tgttggtaaa gtgggggcag ggtggagggg gacacagaag cccatttccc
     2041 ctccaccttt gtctcttcca ggtgtgcttt actcacagtc ctgacctgcc cgctttcttc
     2101 ccccctctca tgtccccttt ggattgccca gtgtgatgca tggcatcgtt gtgtgtctgt
     2161 ctaggaggga aggggcagtg ggtgggagag aagtttgccc tccattgatg ttctctgcag
     2221 tgggcctaga tggatctgga ctgggggagc ctttcttttc ccttctccct tcctctcaag
     2281 ccaggtccta caagggtcag cccaggctac agaacatcca caggtgctct agacactgca
     2341 ggtagacata ggatgagagt tcttgcctcc tttcatgcga aacgatccta aagtcttcag
     2401 tacccggggg gaagctggct ttcagcctgt gtgaaatatc ttggtttgta tttttcagac
     2461 ataggtctct gggctgcaga ggtgtgaggt ctctgggctg cagaggagta aggtttagga
     2521 gagtaggctg gcctctagct cttacagggc tcttggagga gtgtcataca ttttctccag
     2581 tggttcctgg cttctttgcc aactacagga actctcctgc caaagccagt gacctccggg
     2641 actgttgaga aggacagagt tagatttagg agtcaccgct gaggtttgaa ttgctcaagg
     2701 gaaaggcaga gaagagttca ctagagctgc tagtgaacta gtaattttca gcacattcta
     2761 gtaattctca aaatagtctc ctttttaagt caaaaaattt tttgcgtgag cgattttttt
     2821 ccccagatat tgggaaagcc tggtgataaa ttaaatctcc ctcactaggg tattaattta
     2881 catcatcttg atgtccagag tagtcttaga atcctgtggg gtctagctgt tgactgttta
     2941 tgcatttact tgtgtcattt tatttttttc tgcaaggtta tgtttagagt agggatcctt
     3001 agccccttgg tggcccacga tggtatacct cccccagttt tgtatacaaa atatatgaat
     3061 atacgtatgt gcatttttct gagaggtgag tctagagttc tcgtgagatt tttaaaagag
     3121 agagaggact ccgtacctta aagttatcaa tctgtctctt agaggtgacc agtgagagca
     3181 agttagctat ttgccagggg tgtttttgtt tggtaatagg aggccttttg ttgtgcttct
     3241 cacctaggaa tcttcattag aatcccctac agaacttttg aaacatgcac ttgcttgtgt
     3301 ccactctagg cttaattctg actcagtctc tgggattcgg gtctgggcat gcatgtgttt
     3361 aaatggcttc tcttatgatt ctgaatcata ctccaggtta gaactctatt ttgtgttgtt
     3421 gggtggagaa acagtagttc cttggactaa gcgtcaacct gggaattctg aattcctcat
     3481 ggttttgaaa ggacagttcc ctggagttag atgtgtgaac agatcacagt actgaatgaa
     3541 gttacccccc cattgttact tcaggcagca gcctgttccg gctttaacac tttacattgc
     3601 agggtgatgt ggaacaaatc actatgtcgt ataaatgtcc tatgataata gctgagaatt
     3661 ttaagcaccc tggagagagg tactgagata aaacttgtgg gatgataaag gttatcatca
     3721 caggcagctg gcttgtgacc ttgagtcctt tattcctaca tcctgagtag gacatcacag
     3781 ccaatctcaa aggccacttg cctagattct gctctaaatt gccttccaga cataaggtaa
     3841 cttcctattc ctgtttagcc attatataac gtgtacctag tgtccatgtt tgtggggctt
     3901 tgggctgggt ggagtggtgg tgggagaagg agacaccaaa gcagcagaaa aggtccttgc
     3961 cctgaaaaag ttattttaga gaaagagcat ataatttata ataaatgaac atttgtgaaa
     4021 gagcaacacg ttgagtctgt aaatgtggac atcgaagtgg agtagagatt ccttctgact
     4081 tttttcttgt cctacatgta tgagactaaa agggttggga ggtgggaatg tcccccagaa
     4141 tgatgtggtc taggaggtgt gtgtgtggta cttttacaag gttgtcttgt ctagctttgc
     4201 ttggctggtg gcatctttag cccaaatggg cattcagtct tttctcttgc tgtgaggtga
     4261 gagtgattca gaactaatgc atgagaagga gcattttgat ccgagacttg gctttgggct
     4321 gtacgtactc ctagtgagaa gcgaattctc taacaaacta gcattgtttt accttgttat
     4381 aaacccctgc attagacaca gggcactggg atgttcattg ggttctcagc ctgccgatat
     4441 tttgccattc tccccatgtg ttactttgct tccccaagaa gaggagtgag gcggtcttat
     4501 aattctcaga ttggacatga gaaattagaa cttgacaaca gcaaggattt cagcgttgtt
     4561 tggtttttag agcaagctcc ctccagagaa gtttcagcag aaaggagcca ggagagcata
     4621 gaatagaaga gagctcttat tctacctttt agagaattcc tgttccctat cttttctttc
     4681 ctgtcctcct ctccccttct tatttgaatg tgtgtcggta gtatatacac gttactctga
     4741 ttatgtgttt atcacgaatg ctagtaagaa aggatgaact ccagagtacc gtttgctgag
     4801 gctttcagct gtgttatggg agaaataggt gaaggcttta gcatttaatc tactggtaca
     4861 aaattaggaa aggaaaaaaa tcactgtatt atctttgata atcactgatt atcttttccc
     4921 tgctttaaaa ctaaatgagg ggcttccctg gtggtgcagt ggttgagagt ccgcctgccg
     4981 atgcagggga cgtgggttcg tgcctcggcc cgggaggatc ccacatgcca cggagcggct
     5041 gagcctgcgc gcccgaggcc tgtgctccgc aacggtagac gccacggcag tgagaggccc
     5101 gcg
//
LOCUS       XM_032606957            5152 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X5, mRNA.
ACCESSION   XM_032606957
VERSION     XM_032606957.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5152
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5152
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 6 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740884"
     CDS             151..1671
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X3"
                     /protein_id="XP_032462848.1"
                     /db_xref="GeneID:116740884"
                     /translation="MSGNSAPSSEQNNNYETKTNLRMSEKKCSWASYMTNSPTLIVMI
                     GLPARGKTYVSKKLTRYLNWIGVPTKAVKSYKSYDFFRHDNEEAMKIRKQCALVALED
                     VKAYLTEDSGQIAVFDATNTTRERRALILNFAEENSFKVFFVESVCDDPDVIAANILE
                     VKVSSPDYPERNRENVMEDFLKRIECYKVTYQPLDPDNYDKDLSFIKVINVGQRFLVN
                     KVQDYIQSKIVYYLMNIHVHPRTIYLCRHGESEFNLLGKIGGDSGLSVRGKQFAQALR
                     KFLEEQEIADLKVWTSQLKRTIQTAESLGVTYEQWKILNEIDAGVCEEMTYAEIKERY
                     PDEFALRDEEKYLYRYPGGESYQDLVQRLEPVIMELERQGNVLVISHQAVMRCLLAYF
                     LDKGADELPYLRCPLHTIFKLTPVAYGCKVETIKLNVEAVNTHRDKPTNNFPKNQTPV
                     RMRRNSFTPLSSSNTVRRPRNYSVGSRPLKPLSPLRALDMQEGADQPKTQVSIPVV"
     misc_feature    226..867
                     /gene="PFKFB2"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    874..1425
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 ttggtggacg attctctcca ggtgagggcc aacgcgagag tgggcggagc caggcagggc
       61 acgtgattcg ccggagactg gtgtgccgga ccccggccac cgtgtcggct cctggctgta
      121 tcgttaccgg gcatcccctg aagagctgcc atgtctggga attctgcccc ttcgtcagaa
      181 cagaacaaca actatgaaac gaaaacaaat ctacgaatgt cagagaagaa atgttcgtgg
      241 gcatcctaca tgaccaactc cccgaccctc attgttatga ttggcttacc agcccggggc
      301 aaaacctacg tgtccaagaa actcacacgc tacctcaact ggattggggt gcccaccaaa
      361 gcggtcaagt cctataaatc ctatgacttc ttccggcatg acaacgagga ggccatgaag
      421 atacgcaaac agtgtgctct ggtggcgctg gaggatgtga aggcgtatct cacggaggac
      481 agtgggcaga ttgcggtgtt tgatgctacc aataccactc gagagaggag ggccttgatt
      541 ctgaactttg ccgaggagaa ttccttcaag gtgttctttg tggaatctgt ctgcgatgat
      601 cccgatgtca ttgctgccaa catcctggaa gtaaaggtgt cgagccctga ctaccctgaa
      661 aggaacaggg agaatgtgat ggaggacttc ctaaagagaa ttgagtgcta caaagtcacc
      721 tatcaacccc ttgacccaga caactatgac aaggatcttt ctttcatcaa ggtgataaac
      781 gtgggccagc gatttctagt gaacaaagtc caggactaca tccagagcaa gatcgtctac
      841 tacctcatga atatccatgt ccatcctcgc accatttacc tttgccggca cggagagagc
      901 gagttcaatc tcttgggaaa gattgggggt gactcaggcc tctccgtgcg gggaaaacag
      961 tttgcccagg ctctaaggaa gtttctggag gaacaggaga tagcagacct caaagtgtgg
     1021 acaagtcagt tgaagaggac tatccagacc gctgaatctc tgggggtgac ctatgagcag
     1081 tggaagattc tgaatgagat tgatgctggc gtgtgcgagg agatgactta tgcggagatt
     1141 aaggagcggt acccagacga gtttgcgctt cgagatgaag agaaatacct gtatcgatat
     1201 cctggagggg agtcatacca ggacctggta cagcggctgg agcctgtcat catggagctg
     1261 gagcgtcagg gcaacgtcct cgtcatctcc caccaggctg tcatgcgctg cctcctggcc
     1321 tacttcttgg acaagggtgc agatgagcta ccgtacctga ggtgccctct ccataccatc
     1381 ttcaaactta ctcctgtagc ctacggctgc aaagtggaaa caattaaact taacgtggag
     1441 gctgtgaaca ctcaccgtga caagccaact aacaacttcc ccaagaacca aacccctgta
     1501 aggatgagaa ggaacagctt tacgcctctg tccagttcga atacagtaag gcgtccgaga
     1561 aattacagtg ttgggagccg gcccctcaag cccctcagcc ctctccgtgc cctggacatg
     1621 caagaagggg ccgaccagcc gaagacccaa gtcagcattc cggtggtgta accgtgtgtc
     1681 tccctcccat cctggcctcc tgcccttgtc actaatcacc aaggagtcat ttaacttcca
     1741 gctcccacct ccccaccccg acccccacca gccccacact gtggatctta gcagagaatg
     1801 tgaggtcacg tgtttccaga ccaaccttag ctagtgtacg gtgtgagaca tctcctcgcc
     1861 caggggcaag ctggcgagtt gggtgtttta ggacaggtcc tcagtctggg ggggggtctg
     1921 gaggaggagg aaaagggatc cactctcctg gggtgattgg cagagctggg gctggggctg
     1981 aggctgagca tgccgtggtt cttgtccatc cacagtgtct aaactcacta atgtccttgt
     2041 gttggtaaag tgggggcagg gtggaggggg acacagaagc ccatttcccc tccacctttg
     2101 tctcttccag gtgtgcttta ctcacagtcc tgacctgccc gctttcttcc cccctctcat
     2161 gtcccctttg gattgcccag tgtgatgcat ggcatcgttg tgtgtctgtc taggagggaa
     2221 ggggcagtgg gtgggagaga agtttgccct ccattgatgt tctctgcagt gggcctagat
     2281 ggatctggac tgggggagcc tttcttttcc cttctccctt cctctcaagc caggtcctac
     2341 aagggtcagc ccaggctaca gaacatccac aggtgctcta gacactgcag gtagacatag
     2401 gatgagagtt cttgcctcct ttcatgcgaa acgatcctaa agtcttcagt acccgggggg
     2461 aagctggctt tcagcctgtg tgaaatatct tggtttgtat ttttcagaca taggtctctg
     2521 ggctgcagag gtgtgaggtc tctgggctgc agaggagtaa ggtttaggag agtaggctgg
     2581 cctctagctc ttacagggct cttggaggag tgtcatacat tttctccagt ggttcctggc
     2641 ttctttgcca actacaggaa ctctcctgcc aaagccagtg acctccggga ctgttgagaa
     2701 ggacagagtt agatttagga gtcaccgctg aggtttgaat tgctcaaggg aaaggcagag
     2761 aagagttcac tagagctgct agtgaactag taattttcag cacattctag taattctcaa
     2821 aatagtctcc tttttaagtc aaaaaatttt ttgcgtgagc gatttttttc cccagatatt
     2881 gggaaagcct ggtgataaat taaatctccc tcactagggt attaatttac atcatcttga
     2941 tgtccagagt agtcttagaa tcctgtgggg tctagctgtt gactgtttat gcatttactt
     3001 gtgtcatttt atttttttct gcaaggttat gtttagagta gggatcctta gccccttggt
     3061 ggcccacgat ggtatacctc ccccagtttt gtatacaaaa tatatgaata tacgtatgtg
     3121 catttttctg agaggtgagt ctagagttct cgtgagattt ttaaaagaga gagaggactc
     3181 cgtaccttaa agttatcaat ctgtctctta gaggtgacca gtgagagcaa gttagctatt
     3241 tgccaggggt gtttttgttt ggtaatagga ggccttttgt tgtgcttctc acctaggaat
     3301 cttcattaga atcccctaca gaacttttga aacatgcact tgcttgtgtc cactctaggc
     3361 ttaattctga ctcagtctct gggattcggg tctgggcatg catgtgttta aatggcttct
     3421 cttatgattc tgaatcatac tccaggttag aactctattt tgtgttgttg ggtggagaaa
     3481 cagtagttcc ttggactaag cgtcaacctg ggaattctga attcctcatg gttttgaaag
     3541 gacagttccc tggagttaga tgtgtgaaca gatcacagta ctgaatgaag ttaccccccc
     3601 attgttactt caggcagcag cctgttccgg ctttaacact ttacattgca gggtgatgtg
     3661 gaacaaatca ctatgtcgta taaatgtcct atgataatag ctgagaattt taagcaccct
     3721 ggagagaggt actgagataa aacttgtggg atgataaagg ttatcatcac aggcagctgg
     3781 cttgtgacct tgagtccttt attcctacat cctgagtagg acatcacagc caatctcaaa
     3841 ggccacttgc ctagattctg ctctaaattg ccttccagac ataaggtaac ttcctattcc
     3901 tgtttagcca ttatataacg tgtacctagt gtccatgttt gtggggcttt gggctgggtg
     3961 gagtggtggt gggagaagga gacaccaaag cagcagaaaa ggtccttgcc ctgaaaaagt
     4021 tattttagag aaagagcata taatttataa taaatgaaca tttgtgaaag agcaacacgt
     4081 tgagtctgta aatgtggaca tcgaagtgga gtagagattc cttctgactt ttttcttgtc
     4141 ctacatgtat gagactaaaa gggttgggag gtgggaatgt cccccagaat gatgtggtct
     4201 aggaggtgtg tgtgtggtac ttttacaagg ttgtcttgtc tagctttgct tggctggtgg
     4261 catctttagc ccaaatgggc attcagtctt ttctcttgct gtgaggtgag agtgattcag
     4321 aactaatgca tgagaaggag cattttgatc cgagacttgg ctttgggctg tacgtactcc
     4381 tagtgagaag cgaattctct aacaaactag cattgtttta ccttgttata aacccctgca
     4441 ttagacacag ggcactggga tgttcattgg gttctcagcc tgccgatatt ttgccattct
     4501 ccccatgtgt tactttgctt ccccaagaag aggagtgagg cggtcttata attctcagat
     4561 tggacatgag aaattagaac ttgacaacag caaggatttc agcgttgttt ggtttttaga
     4621 gcaagctccc tccagagaag tttcagcaga aaggagccag gagagcatag aatagaagag
     4681 agctcttatt ctacctttta gagaattcct gttccctatc ttttctttcc tgtcctcctc
     4741 tccccttctt atttgaatgt gtgtcggtag tatatacacg ttactctgat tatgtgttta
     4801 tcacgaatgc tagtaagaaa ggatgaactc cagagtaccg tttgctgagg ctttcagctg
     4861 tgttatggga gaaataggtg aaggctttag catttaatct actggtacaa aattaggaaa
     4921 ggaaaaaaat cactgtatta tctttgataa tcactgatta tcttttccct gctttaaaac
     4981 taaatgaggg gcttccctgg tggtgcagtg gttgagagtc cgcctgccga tgcaggggac
     5041 gtgggttcgt gcctcggccc gggaggatcc cacatgccac ggagcggctg agcctgcgcg
     5101 cccgaggcct gtgctccgca acggtagacg ccacggcagt gagaggcccg cg
//
LOCUS       XM_032606963            6034 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X6, mRNA.
ACCESSION   XM_032606963
VERSION     XM_032606963.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6034
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6034
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 31 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740884"
     CDS             1102..2553
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X4"
                     /protein_id="XP_032462854.1"
                     /db_xref="GeneID:116740884"
                     /translation="MTNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVY
                     RRQAVKSYKSYDFFRHDNEEAMKIRKQCALVALEDVKAYLTEDSGQIAVFDATNTTRE
                     RRALILNFAEENSFKVFFVESVCDDPDVIAANILEVKVSSPDYPERNRENVMEDFLKR
                     IECYKVTYQPLDPDNYDKDLSFIKVINVGQRFLVNKVQDYIQSKIVYYLMNIHVHPRT
                     IYLCRHGESEFNLLGKIGGDSGLSVRGKQFAQALRKFLEEQEIADLKVWTSQLKRTIQ
                     TAESLGVTYEQWKILNEIDAGVCEEMTYAEIKERYPDEFALRDEEKYLYRYPGGESYQ
                     DLVQRLEPVIMELERQGNVLVISHQAVMRCLLAYFLDKGADELPYLRCPLHTIFKLTP
                     VAYGCKVETIKLNVEAVNTHRDKPTNNFPKNQTPVRMRRNSFTPLSSSNTVRRPRNYS
                     VGSRPLKPLSPLRALDMQEGADQPKTQVSIPVV"
     misc_feature    1102..1749
                     /gene="PFKFB2"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    1756..2307
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 tagctgtttt taatatttca aagcgcgtga tagaaattgg gcattaaact atagcttcga
       61 tggttaacta aagcataaac tttcttagcg tttggctgca gaacttcgat atgttatgct
      121 tatcagtcaa acggcaggac ataattggca gttttatgac ttctgatgaa taaaaagaag
      181 gtactactaa tgaagcacac tttaaagggc agcatatttc aaaatattgg ggctgtttag
      241 agcaaaaagt ggaagatgac atggtcatga gaaagccggg aaccattggc cttctagacc
      301 acccttcagg tttagattag agagcagagt tatgctggcc acatggctcc ctttgtcagg
      361 tgctgacaag agctggtact aggactgatt gggcagtcat gaaaccagga gtctggtcag
      421 agccctgacc ttgactttct attgagggac tgtgggccaa gctcttccct tttctgggct
      481 tgaggttttc tgtccgtagg agggaagtta ttacaccttc atcccctcga agcgtgttca
      541 tgaagggaaa ataagtttaa gattgagaaa gtgagttcaa ccttgtgtaa agaaggtaga
      601 agagaatttc aggattgaaa cagctttccg ttctttgtca aggggtaagt tacattgtct
      661 ccaaaattaa tcagcataca gtgtctactg ttcaaattaa ggtggtgatg gctttgtttt
      721 ttaacaggca ggacagaatg tacctagttt tgcccatgtg gcaattcgag ataggaagtg
      781 tggtttagtt ttgtcctccg gaaattgagc agctctggtt gcagcaggtg tacgtgggtg
      841 tgttatgggc agaggtggga ggtgtggtgc tgggggccac cgtggggagt ccttggtggc
      901 ctgtgttttc ttttgttctt agaactctct gtccagtttg gtaaacatgg agcagctggt
      961 tccctggtcg gcctcagagc gtctcccaag tatcagttca ttttcagctt cagggaggat
     1021 aacaggacct ttgggagaag tgcctaatgg gctggaaggt gtggaccaag cagtactaga
     1081 agtgcagcgt gggcatccta catgaccaac tccccgaccc tcattgttat gattggctta
     1141 ccagcccggg gcaaaaccta cgtgtccaag aaactcacac gctacctcaa ctggattggg
     1201 gtgcccacca aagtgtttaa tcttggggtg tatcggcgtc aagcggtcaa gtcctataaa
     1261 tcctatgact tcttccggca tgacaacgag gaggccatga agatacgcaa acagtgtgct
     1321 ctggtggcgc tggaggatgt gaaggcgtat ctcacggagg acagtgggca gattgcggtg
     1381 tttgatgcta ccaataccac tcgagagagg agggccttga ttctgaactt tgccgaggag
     1441 aattccttca aggtgttctt tgtggaatct gtctgcgatg atcccgatgt cattgctgcc
     1501 aacatcctgg aagtaaaggt gtcgagccct gactaccctg aaaggaacag ggagaatgtg
     1561 atggaggact tcctaaagag aattgagtgc tacaaagtca cctatcaacc ccttgaccca
     1621 gacaactatg acaaggatct ttctttcatc aaggtgataa acgtgggcca gcgatttcta
     1681 gtgaacaaag tccaggacta catccagagc aagatcgtct actacctcat gaatatccat
     1741 gtccatcctc gcaccattta cctttgccgg cacggagaga gcgagttcaa tctcttggga
     1801 aagattgggg gtgactcagg cctctccgtg cggggaaaac agtttgccca ggctctaagg
     1861 aagtttctgg aggaacagga gatagcagac ctcaaagtgt ggacaagtca gttgaagagg
     1921 actatccaga ccgctgaatc tctgggggtg acctatgagc agtggaagat tctgaatgag
     1981 attgatgctg gcgtgtgcga ggagatgact tatgcggaga ttaaggagcg gtacccagac
     2041 gagtttgcgc ttcgagatga agagaaatac ctgtatcgat atcctggagg ggagtcatac
     2101 caggacctgg tacagcggct ggagcctgtc atcatggagc tggagcgtca gggcaacgtc
     2161 ctcgtcatct cccaccaggc tgtcatgcgc tgcctcctgg cctacttctt ggacaagggt
     2221 gcagatgagc taccgtacct gaggtgccct ctccatacca tcttcaaact tactcctgta
     2281 gcctacggct gcaaagtgga aacaattaaa cttaacgtgg aggctgtgaa cactcaccgt
     2341 gacaagccaa ctaacaactt ccccaagaac caaacccctg taaggatgag aaggaacagc
     2401 tttacgcctc tgtccagttc gaatacagta aggcgtccga gaaattacag tgttgggagc
     2461 cggcccctca agcccctcag ccctctccgt gccctggaca tgcaagaagg ggccgaccag
     2521 ccgaagaccc aagtcagcat tccggtggtg taaccgtgtg tctccctccc atcctggcct
     2581 cctgcccttg tcactaatca ccaaggagtc atttaacttc cagctcccac ctccccaccc
     2641 cgacccccac cagccccaca ctgtggatct tagcagagaa tgtgaggtca cgtgtttcca
     2701 gaccaacctt agctagtgta cggtgtgaga catctcctcg cccaggggca agctggcgag
     2761 ttgggtgttt taggacaggt cctcagtctg ggggggggtc tggaggagga ggaaaaggga
     2821 tccactctcc tggggtgatt ggcagagctg gggctggggc tgaggctgag catgccgtgg
     2881 ttcttgtcca tccacagtgt ctaaactcac taatgtcctt gtgttggtaa agtgggggca
     2941 gggtggaggg ggacacagaa gcccatttcc cctccacctt tgtctcttcc aggtgtgctt
     3001 tactcacagt cctgacctgc ccgctttctt cccccctctc atgtcccctt tggattgccc
     3061 agtgtgatgc atggcatcgt tgtgtgtctg tctaggaggg aaggggcagt gggtgggaga
     3121 gaagtttgcc ctccattgat gttctctgca gtgggcctag atggatctgg actgggggag
     3181 cctttctttt cccttctccc ttcctctcaa gccaggtcct acaagggtca gcccaggcta
     3241 cagaacatcc acaggtgctc tagacactgc aggtagacat aggatgagag ttcttgcctc
     3301 ctttcatgcg aaacgatcct aaagtcttca gtacccgggg ggaagctggc tttcagcctg
     3361 tgtgaaatat cttggtttgt atttttcaga cataggtctc tgggctgcag aggtgtgagg
     3421 tctctgggct gcagaggagt aaggtttagg agagtaggct ggcctctagc tcttacaggg
     3481 ctcttggagg agtgtcatac attttctcca gtggttcctg gcttctttgc caactacagg
     3541 aactctcctg ccaaagccag tgacctccgg gactgttgag aaggacagag ttagatttag
     3601 gagtcaccgc tgaggtttga attgctcaag ggaaaggcag agaagagttc actagagctg
     3661 ctagtgaact agtaattttc agcacattct agtaattctc aaaatagtct cctttttaag
     3721 tcaaaaaatt ttttgcgtga gcgatttttt tccccagata ttgggaaagc ctggtgataa
     3781 attaaatctc cctcactagg gtattaattt acatcatctt gatgtccaga gtagtcttag
     3841 aatcctgtgg ggtctagctg ttgactgttt atgcatttac ttgtgtcatt ttattttttt
     3901 ctgcaaggtt atgtttagag tagggatcct tagccccttg gtggcccacg atggtatacc
     3961 tcccccagtt ttgtatacaa aatatatgaa tatacgtatg tgcatttttc tgagaggtga
     4021 gtctagagtt ctcgtgagat ttttaaaaga gagagaggac tccgtacctt aaagttatca
     4081 atctgtctct tagaggtgac cagtgagagc aagttagcta tttgccaggg gtgtttttgt
     4141 ttggtaatag gaggcctttt gttgtgcttc tcacctagga atcttcatta gaatccccta
     4201 cagaactttt gaaacatgca cttgcttgtg tccactctag gcttaattct gactcagtct
     4261 ctgggattcg ggtctgggca tgcatgtgtt taaatggctt ctcttatgat tctgaatcat
     4321 actccaggtt agaactctat tttgtgttgt tgggtggaga aacagtagtt ccttggacta
     4381 agcgtcaacc tgggaattct gaattcctca tggttttgaa aggacagttc cctggagtta
     4441 gatgtgtgaa cagatcacag tactgaatga agttaccccc ccattgttac ttcaggcagc
     4501 agcctgttcc ggctttaaca ctttacattg cagggtgatg tggaacaaat cactatgtcg
     4561 tataaatgtc ctatgataat agctgagaat tttaagcacc ctggagagag gtactgagat
     4621 aaaacttgtg ggatgataaa ggttatcatc acaggcagct ggcttgtgac cttgagtcct
     4681 ttattcctac atcctgagta ggacatcaca gccaatctca aaggccactt gcctagattc
     4741 tgctctaaat tgccttccag acataaggta acttcctatt cctgtttagc cattatataa
     4801 cgtgtaccta gtgtccatgt ttgtggggct ttgggctggg tggagtggtg gtgggagaag
     4861 gagacaccaa agcagcagaa aaggtccttg ccctgaaaaa gttattttag agaaagagca
     4921 tataatttat aataaatgaa catttgtgaa agagcaacac gttgagtctg taaatgtgga
     4981 catcgaagtg gagtagagat tccttctgac ttttttcttg tcctacatgt atgagactaa
     5041 aagggttggg aggtgggaat gtcccccaga atgatgtggt ctaggaggtg tgtgtgtggt
     5101 acttttacaa ggttgtcttg tctagctttg cttggctggt ggcatcttta gcccaaatgg
     5161 gcattcagtc ttttctcttg ctgtgaggtg agagtgattc agaactaatg catgagaagg
     5221 agcattttga tccgagactt ggctttgggc tgtacgtact cctagtgaga agcgaattct
     5281 ctaacaaact agcattgttt taccttgtta taaacccctg cattagacac agggcactgg
     5341 gatgttcatt gggttctcag cctgccgata ttttgccatt ctccccatgt gttactttgc
     5401 ttccccaaga agaggagtga ggcggtctta taattctcag attggacatg agaaattaga
     5461 acttgacaac agcaaggatt tcagcgttgt ttggttttta gagcaagctc cctccagaga
     5521 agtttcagca gaaaggagcc aggagagcat agaatagaag agagctctta ttctaccttt
     5581 tagagaattc ctgttcccta tcttttcttt cctgtcctcc tctccccttc ttatttgaat
     5641 gtgtgtcggt agtatataca cgttactctg attatgtgtt tatcacgaat gctagtaaga
     5701 aaggatgaac tccagagtac cgtttgctga ggctttcagc tgtgttatgg gagaaatagg
     5761 tgaaggcttt agcatttaat ctactggtac aaaattagga aaggaaaaaa atcactgtat
     5821 tatctttgat aatcactgat tatcttttcc ctgctttaaa actaaatgag gggcttccct
     5881 ggtggtgcag tggttgagag tccgcctgcc gatgcagggg acgtgggttc gtgcctcggc
     5941 ccgggaggat cccacatgcc acggagcggc tgagcctgcg cgcccgaggc ctgtgctccg
     6001 caacggtaga cgccacggca gtgagaggcc cgcg
//
LOCUS       XM_032606973            3747 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X7, mRNA.
ACCESSION   XM_032606973
VERSION     XM_032606973.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3747
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 33 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740884"
     CDS             151..1563
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X5"
                     /protein_id="XP_032462864.1"
                     /db_xref="GeneID:116740884"
                     /translation="MSGNSAPSSEQNNNYETKTNLRMSEKKCSWASYMTNSPTLIVMI
                     GLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSYDFFRHDNEEAMKIR
                     KQCALVALEDVKAYLTEDSGQIAVFDATNTTRERRALILNFAEENSFKVFFVESVCDD
                     PDVIAANILEVKVSSPDYPERNRENVMEDFLKRIECYKVTYQPLDPDNYDKDLSFIKV
                     INVGQRFLVNKVQDYIQSKIVYYLMNIHVHPRTIYLCRHGESEFNLLGKIGGDSGLSV
                     RGKQFAQALRKFLEEQEIADLKVWTSQLKRTIQTAESLGVTYEQWKILNEIDAGVCEE
                     MTYAEIKERYPDEFALRDEEKYLYRYPGGESYQDLVQRLEPVIMELERQGNVLVISHQ
                     AVMRCLLAYFLDKGADELPYLRCPLHTIFKLTPVAYGCKVETIKLNVEAVNTHRDKPT
                     AETSLAVHRLSSPASPPLLS"
     misc_feature    226..897
                     /gene="PFKFB2"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    904..1455
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 ttggtggacg attctctcca ggtgagggcc aacgcgagag tgggcggagc caggcagggc
       61 acgtgattcg ccggagactg gtgtgccgga ccccggccac cgtgtcggct cctggctgta
      121 tcgttaccgg gcatcccctg aagagctgcc atgtctggga attctgcccc ttcgtcagaa
      181 cagaacaaca actatgaaac gaaaacaaat ctacgaatgt cagagaagaa atgttcgtgg
      241 gcatcctaca tgaccaactc cccgaccctc attgttatga ttggcttacc agcccggggc
      301 aaaacctacg tgtccaagaa actcacacgc tacctcaact ggattggggt gcccaccaaa
      361 gtgtttaatc ttggggtgta tcggcgtcaa gcggtcaagt cctataaatc ctatgacttc
      421 ttccggcatg acaacgagga ggccatgaag atacgcaaac agtgtgctct ggtggcgctg
      481 gaggatgtga aggcgtatct cacggaggac agtgggcaga ttgcggtgtt tgatgctacc
      541 aataccactc gagagaggag ggccttgatt ctgaactttg ccgaggagaa ttccttcaag
      601 gtgttctttg tggaatctgt ctgcgatgat cccgatgtca ttgctgccaa catcctggaa
      661 gtaaaggtgt cgagccctga ctaccctgaa aggaacaggg agaatgtgat ggaggacttc
      721 ctaaagagaa ttgagtgcta caaagtcacc tatcaacccc ttgacccaga caactatgac
      781 aaggatcttt ctttcatcaa ggtgataaac gtgggccagc gatttctagt gaacaaagtc
      841 caggactaca tccagagcaa gatcgtctac tacctcatga atatccatgt ccatcctcgc
      901 accatttacc tttgccggca cggagagagc gagttcaatc tcttgggaaa gattgggggt
      961 gactcaggcc tctccgtgcg gggaaaacag tttgcccagg ctctaaggaa gtttctggag
     1021 gaacaggaga tagcagacct caaagtgtgg acaagtcagt tgaagaggac tatccagacc
     1081 gctgaatctc tgggggtgac ctatgagcag tggaagattc tgaatgagat tgatgctggc
     1141 gtgtgcgagg agatgactta tgcggagatt aaggagcggt acccagacga gtttgcgctt
     1201 cgagatgaag agaaatacct gtatcgatat cctggagggg agtcatacca ggacctggta
     1261 cagcggctgg agcctgtcat catggagctg gagcgtcagg gcaacgtcct cgtcatctcc
     1321 caccaggctg tcatgcgctg cctcctggcc tacttcttgg acaagggtgc agatgagcta
     1381 ccgtacctga ggtgccctct ccataccatc ttcaaactta ctcctgtagc ctacggctgc
     1441 aaagtggaaa caattaaact taacgtggag gctgtgaaca ctcaccgtga caagccaact
     1501 gcggagacct cgctggctgt gcataggctc tcctctccgg cctccccccc attgctctcc
     1561 tgatgatgtg aaggctgagg ccagacctgt ccgggagact ggcctactga aaaacttggc
     1621 atgtcagctc caaaggggct tgaacaggaa gttcagtggg gattggacat tcggggccac
     1681 ccaaatgagc cctgaaaaag ctgcaccaca tttcttcccc tcatgcctaa tgggaatatc
     1741 agttacactg taaaacttga cttccctgtg cctcaaaaca tttcacagcc tgaaccaatt
     1801 tcgttttgat catttctttg ctaggtttgg cccaagttgg tcaatcctgt tccattttgg
     1861 catttaacat ctgacctgtg actgtatccc tagctggctt tctttgccta gtgtgcaaat
     1921 gtacctcttc agatttaatt gttcccaagt gagagggctg aactccagca aaccatttct
     1981 gtgctgtaag agctggtctc tacatccact acaagtgcgc aggctagggt acaatataca
     2041 taggtttgcg gtcacttttt tgtcacattg gaaacgagac aaattcacca ggtgaatgga
     2101 gggtatctga gaaattcagt ccctaaaacg tctcttctgc ggtgacggaa gagcagcgtt
     2161 agtagccatc tttttgttta gagaagtttt tcttgtttca ggccccttga gggcaggatc
     2221 tgactacaag actccacaaa atatgtaccc ttcttctgag ttctcttttg tagctactgt
     2281 attttctacc tgatactgtg tgcctctcaa agctgaagag ggctgacgtc atcctctctc
     2341 gtggttcgaa atgagggctg gagagaaaag tagggtgcca tttggatcac atgaagaagt
     2401 aaaagaagtt tccttgggaa tcaactctcc caaggagttc ttttggtttc agaacaggtg
     2461 cagggagaca tgcccttctg tggggtctgc taccgtgatg cggtctctaa gaaagctgtg
     2521 gttatgactt caagagcatc tggtcttcta atcccttcct cttagctaat tgtcactatt
     2581 gtggtctact gttctcttat gtagaacctt ggaggaatgg gatggggggg aaccaagccc
     2641 tcaatgcatt aatcatgtgg tttcccttaa agataaacca ggtaattatt ccttagatca
     2701 gtgattgtca aatgtataaa tatgtccctg cagatgtgat tttaatacgt cactgctcct
     2761 gaaggaaggc atggaagctc ccaaggatac tatatcttac aagcaaaatc tttttttttt
     2821 taaaaaaaga atagtaagtt attagctttt taaatttttt cccccttttc attcggatgc
     2881 ccacttgctg gtcaagaggg tgagtagcaa gaagatgcaa tgcaattttc ccaaatggtt
     2941 cttgtatact gtggatgata caggaccctg ttacctaaga tgtgatgtgc tgggctgctg
     3001 gcagttcagc aaccaactag gagcttattt caggtaattt tcatctagct gctcatagca
     3061 tgttgtgctg taatgatttt gttcttgtga tgcaggtttc tttctgcatc taaatacacc
     3121 gtcttttgat gatctgataa atgtttttat ttagttattt attcatccat gtaaggtttt
     3181 tttttgtttt ttgttttttt tgcggtacgc gggcctctta ctgctgcggc ctctcccgtt
     3241 gcggagcaca ggctccggac gcgcaggctc agcggccatg gcccacgggc ccagccgctc
     3301 cgcggcatgt gggatcctcc tggaccgggg catgaactcg tgtcccctgc atcggcaggc
     3361 agactcccaa ccactgcgcc accagggaag cccatgtaag gtatttttaa gtccccatat
     3421 taatatctgc atgtatttaa tcagaatgta aggtaatttg tgtttggtag aaatttagat
     3481 attttgagtg tttaaagtcc atagtattac cttaaattaa aatttcagaa tgtaggtatc
     3541 cgtcttctgt aaaaggataa taactgtgtg aaggcacagt ggatttcttt tgaatacttt
     3601 tttttttcat tgatttttat tataagtata aaccaagaga tacatttctc tggagaaaag
     3661 tttacctcct ggataaataa gattgtgcta aaatttgtga ataatatgta ttgcttttgt
     3721 aataagaaat gtaataaaag ttatttt
//
LOCUS       XM_032606983            3112 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X8, mRNA.
ACCESSION   XM_032606983
VERSION     XM_032606983.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3112
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 32 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740884"
     CDS             151..1539
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X6"
                     /protein_id="XP_032462874.1"
                     /db_xref="GeneID:116740884"
                     /translation="MSGNSAPSSEQNNNYETKTNLRMSEKKCSWASYMTNSPTLIVMI
                     GLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSYDFFRHDNEEAMKIR
                     KQCALVALEDVKAYLTEDSGQIAVFDATNTTRERRALILNFAEENSFKVFFVESVCDD
                     PDVIAANILEVKVSSPDYPERNRENVMEDFLKRIECYKVTYQPLDPDNYDKDLSFIKV
                     INVGQRFLVNKVQDYIQSKIVYYLMNIHVHPRTIYLCRHGESEFNLLGKIGGDSGLSV
                     RGKQFAQALRKFLEEQEIADLKVWTSQLKRTIQTAESLGVTYEQWKILNEIDAGVCEE
                     MTYAEIKERYPDEFALRDEEKYLYRYPGGESYQDLVQRLEPVIMELERQGNVLVISHQ
                     AVMRCLLAYFLDKGADELPYLRCPLHTIFKLTPVAYGCKVETIKLNVEAVNTHRDKPT
                     LGLGVQDICILD"
     misc_feature    226..897
                     /gene="PFKFB2"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    904..1455
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 ttggtggacg attctctcca ggtgagggcc aacgcgagag tgggcggagc caggcagggc
       61 acgtgattcg ccggagactg gtgtgccgga ccccggccac cgtgtcggct cctggctgta
      121 tcgttaccgg gcatcccctg aagagctgcc atgtctggga attctgcccc ttcgtcagaa
      181 cagaacaaca actatgaaac gaaaacaaat ctacgaatgt cagagaagaa atgttcgtgg
      241 gcatcctaca tgaccaactc cccgaccctc attgttatga ttggcttacc agcccggggc
      301 aaaacctacg tgtccaagaa actcacacgc tacctcaact ggattggggt gcccaccaaa
      361 gtgtttaatc ttggggtgta tcggcgtcaa gcggtcaagt cctataaatc ctatgacttc
      421 ttccggcatg acaacgagga ggccatgaag atacgcaaac agtgtgctct ggtggcgctg
      481 gaggatgtga aggcgtatct cacggaggac agtgggcaga ttgcggtgtt tgatgctacc
      541 aataccactc gagagaggag ggccttgatt ctgaactttg ccgaggagaa ttccttcaag
      601 gtgttctttg tggaatctgt ctgcgatgat cccgatgtca ttgctgccaa catcctggaa
      661 gtaaaggtgt cgagccctga ctaccctgaa aggaacaggg agaatgtgat ggaggacttc
      721 ctaaagagaa ttgagtgcta caaagtcacc tatcaacccc ttgacccaga caactatgac
      781 aaggatcttt ctttcatcaa ggtgataaac gtgggccagc gatttctagt gaacaaagtc
      841 caggactaca tccagagcaa gatcgtctac tacctcatga atatccatgt ccatcctcgc
      901 accatttacc tttgccggca cggagagagc gagttcaatc tcttgggaaa gattgggggt
      961 gactcaggcc tctccgtgcg gggaaaacag tttgcccagg ctctaaggaa gtttctggag
     1021 gaacaggaga tagcagacct caaagtgtgg acaagtcagt tgaagaggac tatccagacc
     1081 gctgaatctc tgggggtgac ctatgagcag tggaagattc tgaatgagat tgatgctggc
     1141 gtgtgcgagg agatgactta tgcggagatt aaggagcggt acccagacga gtttgcgctt
     1201 cgagatgaag agaaatacct gtatcgatat cctggagggg agtcatacca ggacctggta
     1261 cagcggctgg agcctgtcat catggagctg gagcgtcagg gcaacgtcct cgtcatctcc
     1321 caccaggctg tcatgcgctg cctcctggcc tacttcttgg acaagggtgc agatgagcta
     1381 ccgtacctga ggtgccctct ccataccatc ttcaaactta ctcctgtagc ctacggctgc
     1441 aaagtggaaa caattaaact taacgtggag gctgtgaaca ctcaccgtga caagccaact
     1501 ttaggtttag gagtgcaaga tatttgtatc ctagactgaa cggttgagtg tttcctgtga
     1561 ggatctgggt gttcctcttt gcaacccaca tttcatcttc agagacactg gcattttgaa
     1621 gaaacatgat acggctgttt ggaaataaat ccatcttatg gtgtatctgt gagtagaagg
     1681 tcttagtacc agagaagctc actgatgctt ggggtagccg gaggacaagg ggaataagtg
     1741 cctaataatt gagggaactc tatctgggtt gtatagcctt atgtacattc cattgtcttt
     1801 gttcagccca gaggccatgt tgtgtttgtt ttccagaaat ttgataactt tacataggtt
     1861 ttccggtata cattttgact tgcgttttaa aatattttac tttgaattaa ataattttat
     1921 tggaattaaa tattttaatc tgaatcaggt tgcaacattg gcaggattga cctctgactt
     1981 ccgatcgagg tgacacagac atcagaagta tgtccaggaa tttaatttag actcgtcatg
     2041 tcccgaacac tgtatctcga attatctatg tgctgactgc tgacttcctg acggagtgtg
     2101 gtagggtccg catgctgccc gacagattct ggtagggtcc ctgtgctgac tgaccagcag
     2161 tctctactga gatctgtaag ctgacaagtc tgactgtttt ctaattgtac cagttgacag
     2221 tgtatgcatg ttactgcaat tctctgtcta ttgtacatgt cctacaaaga aaggaagtaa
     2281 ccgctccacg tgttttcttt agggggaagt tctgtacact atgatttttc acagatattt
     2341 cctttagagt agcagccaaa tcctaatcat tttgtagaaa atgaaggttg aacatcacgt
     2401 gtaagttatt ttgtcaactc agctaaggaa atgcctgctc agagcctgac actgttacct
     2461 ttacttgaag tcatcctatc cattccccca cttctgggca ggacttcact ttctgaacat
     2521 tctgtgtcct ccgcttcccc gctatgggct tgtagcattc cattggataa tgctgctgtt
     2581 tttagtccgc tacccatttg cctcttaatt ctaatataat caataaaaat gcaaaggaaa
     2641 ttttggcaaa agtattcttt tcagtaaggc tttcactggg gatccatgac caatttttag
     2701 ctactccgtg ttttttgtat ctgaattgct tgtgtccatt ttttttttct tgcgttgaag
     2761 taacaaaatg aattcattct gataatggtg atggttttgc tgtggcaaaa gcaaaggact
     2821 tgttgccagc tgtgcccttt ggagggattg ggagtgggct gagcaccact gggttaaatg
     2881 gaatggactg agttgggaac cgaagcaata gcgctatcct gcatgtttcc taggcaaagc
     2941 tgtgttgaaa gaaggaatgt taatccttag gggcattcta atttaatctg gtgacactga
     3001 tgtcaaaata tggcactcag atccacataa ggtgtataat tgtatttgaa atgtgttttt
     3061 gtgtgtgtgt gtgtagaatg ggtaaataaa attgttgagt aacttgaatc ta
//
LOCUS       XM_032606994            4277 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (PFKFB2),
            transcript variant X9, mRNA.
ACCESSION   XM_032606994
VERSION     XM_032606994.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4277
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4277
                     /gene="PFKFB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740884"
     CDS             975..2093
                     /gene="PFKFB2"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 2 isoform X7"
                     /protein_id="XP_032462885.1"
                     /db_xref="GeneID:116740884"
                     /translation="MKIRKQCALVALEDVKAYLTEDSGQIAVFDATNTTRERRALILN
                     FAEENSFKVFFVESVCDDPDVIAANILEVKVSSPDYPERNRENVMEDFLKRIECYKVT
                     YQPLDPDNYDKDLSFIKVINVGQRFLVNKVQDYIQSKIVYYLMNIHVHPRTIYLCRHG
                     ESEFNLLGKIGGDSGLSVRGKQFAQALRKFLEEQEIADLKVWTSQLKRTIQTAESLGV
                     TYEQWKILNEIDAGVCEEMTYAEIKERYPDEFALRDEEKYLYRYPGGESYQDLVQRLE
                     PVIMELERQGNVLVISHQAVMRCLLAYFLDKGADELPYLRCPLHTIFKLTPVAYGCKV
                     ETIKLNVEAVNTHRDKPTAETSLAVHRLSSPASPPLLS"
     misc_feature    <975..1427
                     /gene="PFKFB2"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; Region: NK;
                     cl17190"
                     /db_xref="CDD:450170"
     misc_feature    1434..1985
                     /gene="PFKFB2"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 agccacagtg ctggtaaact tgcgagcttg tgatctttct ccttcacagt tccaaccttc
       61 ttccggagct agcgacagcg agtccgattt gagccccgcc ccctggagcc tgcgggcgct
      121 cgattggtgg acgattctct ccaggcatcc cctgaagagc tgccatgtct gggaattctg
      181 ccccttcgtc agaacagaac aacaactatg aaacgaaaac aaatctacga atgtcagaga
      241 agaaatgttc gtgggcatcc tacatgacca actccccgac cctcattgtt atgattggct
      301 taccagcccg gggcaaaacc tacgtgtcca agaaactcac acgctacctc aactggattg
      361 gggtgcccac caaaggtagg tgcaaccatg cattccttgg gaaaggaagt gatcagttcc
      421 tgggcctcac aggcctctgg gagacttatt ctccctggca tcaaggatac agtgttctct
      481 tggcagcagt agtggttgct tcctggttta ctggatttat tccctgtcca tatacttgtt
      541 cctcctggcc tggctcaatt ggcctagttt gggggcagtg cctttgatag gagtattaag
      601 aattaaatga gtatagagct ttacatttcc aaatccctta catctacgtt atctagcagt
      661 atccatgtgg aatagccaaa atggctgagg aaattgaaag tcagacaatt taagacttgt
      721 ccaaattcta gtaagtctga acttgaactt aacctgattc ttaatctggt gttgtttcca
      781 acataccatg gtgctttttt catccccttg gccactctga cattagacca agaagtcccc
      841 tttgggacat cgtattgttt cactgctgga gggtatgggt gtcttctgca gtgtttaatc
      901 ttggggtgta tcggcgtcaa gcggtcaagt cctataaatc ctatgacttc ttccggcatg
      961 acaacgagga ggccatgaag atacgcaaac agtgtgctct ggtggcgctg gaggatgtga
     1021 aggcgtatct cacggaggac agtgggcaga ttgcggtgtt tgatgctacc aataccactc
     1081 gagagaggag ggccttgatt ctgaactttg ccgaggagaa ttccttcaag gtgttctttg
     1141 tggaatctgt ctgcgatgat cccgatgtca ttgctgccaa catcctggaa gtaaaggtgt
     1201 cgagccctga ctaccctgaa aggaacaggg agaatgtgat ggaggacttc ctaaagagaa
     1261 ttgagtgcta caaagtcacc tatcaacccc ttgacccaga caactatgac aaggatcttt
     1321 ctttcatcaa ggtgataaac gtgggccagc gatttctagt gaacaaagtc caggactaca
     1381 tccagagcaa gatcgtctac tacctcatga atatccatgt ccatcctcgc accatttacc
     1441 tttgccggca cggagagagc gagttcaatc tcttgggaaa gattgggggt gactcaggcc
     1501 tctccgtgcg gggaaaacag tttgcccagg ctctaaggaa gtttctggag gaacaggaga
     1561 tagcagacct caaagtgtgg acaagtcagt tgaagaggac tatccagacc gctgaatctc
     1621 tgggggtgac ctatgagcag tggaagattc tgaatgagat tgatgctggc gtgtgcgagg
     1681 agatgactta tgcggagatt aaggagcggt acccagacga gtttgcgctt cgagatgaag
     1741 agaaatacct gtatcgatat cctggagggg agtcatacca ggacctggta cagcggctgg
     1801 agcctgtcat catggagctg gagcgtcagg gcaacgtcct cgtcatctcc caccaggctg
     1861 tcatgcgctg cctcctggcc tacttcttgg acaagggtgc agatgagcta ccgtacctga
     1921 ggtgccctct ccataccatc ttcaaactta ctcctgtagc ctacggctgc aaagtggaaa
     1981 caattaaact taacgtggag gctgtgaaca ctcaccgtga caagccaact gcggagacct
     2041 cgctggctgt gcataggctc tcctctccgg cctccccccc attgctctcc tgatgatgtg
     2101 aaggctgagg ccagacctgt ccgggagact ggcctactga aaaacttggc atgtcagctc
     2161 caaaggggct tgaacaggaa gttcagtggg gattggacat tcggggccac ccaaatgagc
     2221 cctgaaaaag ctgcaccaca tttcttcccc tcatgcctaa tgggaatatc agttacactg
     2281 taaaacttga cttccctgtg cctcaaaaca tttcacagcc tgaaccaatt tcgttttgat
     2341 catttctttg ctaggtttgg cccaagttgg tcaatcctgt tccattttgg catttaacat
     2401 ctgacctgtg actgtatccc tagctggctt tctttgccta gtgtgcaaat gtacctcttc
     2461 agatttaatt gttcccaagt gagagggctg aactccagca aaccatttct gtgctgtaag
     2521 agctggtctc tacatccact acaagtgcgc aggctagggt acaatataca taggtttgcg
     2581 gtcacttttt tgtcacattg gaaacgagac aaattcacca ggtgaatgga gggtatctga
     2641 gaaattcagt ccctaaaacg tctcttctgc ggtgacggaa gagcagcgtt agtagccatc
     2701 tttttgttta gagaagtttt tcttgtttca ggccccttga gggcaggatc tgactacaag
     2761 actccacaaa atatgtaccc ttcttctgag ttctcttttg tagctactgt attttctacc
     2821 tgatactgtg tgcctctcaa agctgaagag ggctgacgtc atcctctctc gtggttcgaa
     2881 atgagggctg gagagaaaag tagggtgcca tttggatcac atgaagaagt aaaagaagtt
     2941 tccttgggaa tcaactctcc caaggagttc ttttggtttc agaacaggtg cagggagaca
     3001 tgcccttctg tggggtctgc taccgtgatg cggtctctaa gaaagctgtg gttatgactt
     3061 caagagcatc tggtcttcta atcccttcct cttagctaat tgtcactatt gtggtctact
     3121 gttctcttat gtagaacctt ggaggaatgg gatggggggg aaccaagccc tcaatgcatt
     3181 aatcatgtgg tttcccttaa agataaacca ggtaattatt ccttagatca gtgattgtca
     3241 aatgtataaa tatgtccctg cagatgtgat tttaatacgt cactgctcct gaaggaaggc
     3301 atggaagctc ccaaggatac tatatcttac aagcaaaatc tttttttttt taaaaaaaga
     3361 atagtaagtt attagctttt taaatttttt cccccttttc attcggatgc ccacttgctg
     3421 gtcaagaggg tgagtagcaa gaagatgcaa tgcaattttc ccaaatggtt cttgtatact
     3481 gtggatgata caggaccctg ttacctaaga tgtgatgtgc tgggctgctg gcagttcagc
     3541 aaccaactag gagcttattt caggtaattt tcatctagct gctcatagca tgttgtgctg
     3601 taatgatttt gttcttgtga tgcaggtttc tttctgcatc taaatacacc gtcttttgat
     3661 gatctgataa atgtttttat ttagttattt attcatccat gtaaggtttt tttttgtttt
     3721 ttgttttttt tgcggtacgc gggcctctta ctgctgcggc ctctcccgtt gcggagcaca
     3781 ggctccggac gcgcaggctc agcggccatg gcccacgggc ccagccgctc cgcggcatgt
     3841 gggatcctcc tggaccgggg catgaactcg tgtcccctgc atcggcaggc agactcccaa
     3901 ccactgcgcc accagggaag cccatgtaag gtatttttaa gtccccatat taatatctgc
     3961 atgtatttaa tcagaatgta aggtaatttg tgtttggtag aaatttagat attttgagtg
     4021 tttaaagtcc atagtattac cttaaattaa aatttcagaa tgtaggtatc cgtcttctgt
     4081 aaaaggataa taactgtgtg aaggcacagt ggatttcttt tgaatacttt tttttttcat
     4141 tgatttttat tataagtata aaccaagaga tacatttctc tggagaaaag tttacctcct
     4201 ggataaataa gattgtgcta aaatttgtga ataatatgta ttgcttttgt aataagaaat
     4261 gtaataaaag ttatttt
//
LOCUS       XM_032607007            8122 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus YOD1 deubiquitinase (YOD1), mRNA.
ACCESSION   XM_032607007
VERSION     XM_032607007.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8122
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8122
                     /gene="YOD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 22 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740912"
     CDS             1282..2328
                     /gene="YOD1"
                     /codon_start=1
                     /product="ubiquitin thioesterase OTU1"
                     /protein_id="XP_032462898.1"
                     /db_xref="GeneID:116740912"
                     /translation="MFGPAKGGYFGVHPPASYPGGACQPAAGTRAGPTGVWPVAGRTD
                     TMWRLRCKAKDGTHVLQGLSSRTRMRELQGQIAAITGIAPGCQRILVGYPPECLDLSN
                     GDTILGDLPIQSGDMLIVEEDQTRPKMSPAFTKHGAPSYIRETLPVLTRAVVPADNSC
                     LFTSVYYVVEGGVLNPACAPEMRHLIAQIVASNPDFYSKAILGKTNQEYCDWIKRDDT
                     WGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRVFP
                     NPDTPPLTIFSSNDDIVLVQALELADEARSKRQFTDVNRFTLRCMVCQKGLTGHAEAR
                     DHAKETGHTNFGEV"
     misc_feature    1420..1644
                     /gene="YOD1"
                     /note="ubiquitin-like (Ubl) domain found in ubiquitin
                     thioesterase OTU1 and similar proteins; Region: Ubl_OTU1;
                     cd17059"
                     /db_xref="CDD:340579"
     misc_feature    order(1429..1431,1456..1458,1549..1551,1558..1560,
                     1564..1566,1570..1572,1618..1632,1642..1644)
                     /gene="YOD1"
                     /note="VCP interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340579"
     misc_feature    1723..2202
                     /gene="YOD1"
                     /note="OTU (ovarian tumor) domain of ubiquitin
                     thioesterase OTU1 and similar proteins; Region: OTU_OTU1;
                     cd22745"
                     /db_xref="CDD:438582"
     misc_feature    order(1759..1761,1879..1884,1888..1890,1906..1908,
                     1915..1917,1936..1953,2014..2016,2020..2022,2026..2037,
                     2068..2070,2074..2085)
                     /gene="YOD1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438582"
ORIGIN      
        1 tacagcccac gctgtaacgt ctgttatggc catcttgaag aacaaaaaag gaaaactgct
       61 ccaggagaaa actggctcat gaaaattttg aaaagatgca tagtttccat ataacttatt
      121 cagaggcagg tttttacagt ggaggtgagt ttgcacattt caagtgaact tttcacagtt
      181 gcccccaggc ccatctgatg cttgattgtg gtgataaacc ccctctaagc agggtaggct
      241 ttgctcctct ggatccagga taaaaaaaga acgagtacat atttctcgga agagaggtaa
      301 attcagaggt gtttttattc ctctttcacc tggggattaa attcatcctt caaaacagct
      361 caaatagtac ctcctctttg aagcttttta caactccagt atgtcacagt tgccctctct
      421 gtgcctatac aactccgttt tatccattca gcaagtattt actgagcaca tatttgcgag
      481 gcacagtcct ttgttctagg gatacagggt tgaaaagggt cacataatct agcattatca
      541 cgttgctatg aaattcagta gttatatgtc ctttacacac caccctctct ctcgattacg
      601 taagtaattt gccattttga aggcaggaat ggagtcgcct tggtatttgt atacctaggt
      661 cctgaactgg aatctggatg acacatgttg gtcttcttca ttcctcctta tactgccacc
      721 acctcctgag tgtagcaatt gccctcagcc cagatgctga cctcatattg cgctttctga
      781 tgtggcaaat ggacgttttc aagttacagt cttatggagg tggaaaggcc agtcttccgg
      841 cccccttaac ctcaatgagt caatgtttgc tgcagccatg agtctagcca cgagtatttg
      901 tttgtctttg actggtcatt tgagtcacag accattcttg gcattcgttt gcattccgaa
      961 ctatgattct gtttctcccg gtgtagtttg gaagccccaa tttaatcatt tccgacctaa
     1021 ttgcaaggat acattccact gtattcgatt caggagctcc ttccgccgct ctcttccctt
     1081 aagcttatat gcttccgacg cggagggtac ctcacttgct ctacaggtag caagaccagt
     1141 cgtacgttag gaatacgggt aaatcttcat cctttgcctc ctgaaggggg tgatggtgag
     1201 aatcagttat cactttaaga gtgtgctaaa acagaagccg cagagtatcg cgagaactgt
     1261 aacaaccagc gacatctcgc gatgtttgga ccggcaaagg gtggctattt tggagtccat
     1321 ccgccggctt cttaccccgg cggcgcctgc caacctgctg ccgggaccag agctggcccc
     1381 acgggtgtct ggcctgtggc cggccggacc gacacgatgt ggcggctccg ctgcaaggcc
     1441 aaggatggca cccatgtttt gcaggggttg tccagccgga cccggatgcg ggaactccag
     1501 ggccaaattg ccgccatcac cgggatcgcc cccggctgtc agcgaatcct cgtaggatac
     1561 ccgcccgagt gcctggacct cagcaacggg gataccattc tgggggattt gcccattcag
     1621 tcaggcgaca tgctgattgt tgaagaagac caaaccaggc ccaaaatgtc acctgcattt
     1681 acaaaacatg gtgctcctag ttacatcagg gaaactctgc ctgtgcttac cagagcggtg
     1741 gtcccagcag acaactcttg cctctttacc agtgtgtact atgttgttga aggaggagtc
     1801 ttgaatccag cttgtgcccc tgagatgaga catctcatag cacaaattgt agcaagcaat
     1861 ccagacttct atagcaaggc aatactggga aaaacaaatc aagagtactg tgactggatc
     1921 aaaagggatg atacttgggg tggagctatt gagatatcca ttttgtctaa gttttatcag
     1981 tgcgaaatat gtgtggtgga tacacagaca gtacgaattg atcgttttgg ggaagatgca
     2041 ggatatacca aaagggtcct gcttatttac gatggcatcc actatgatcc gcttcagcgt
     2101 gtcttcccca acccagacac ccctcctctg accattttct cctctaatga tgatattgtt
     2161 ctcgtgcaag cactggaatt agcagatgaa gctagaagca agagacaatt tactgatgta
     2221 aaccgcttca ccctgagatg catggtatgt cagaagggat taactggaca cgcagaagca
     2281 agggaccatg ccaaggagac aggccatacc aacttcggag aagtgtgatc catgcataat
     2341 gaggattgac gcctactacc tcacagatcc agaaggttct gggtttttca ataagctatt
     2401 cgtaacccta aagaacaaaa ggacacaatg cttgaaccat ccttttaacc taaagccact
     2461 aagacactga attccttgtt aagattaaaa tcagtgtgca agtttacaga tgtgtgtcta
     2521 cagtggtgat acatgccctc tctctgctgg ggtgacagaa tataggtggt ccttgctacc
     2581 tactgacact aacctgaaga ctgagtttta gtattataaa ctagcaccca gcagcattaa
     2641 cttgtagaag aaaacaactt catattttgg gtaatgcgaa aggcctcagg tgaggccacc
     2701 ggacatcaac cacagtgtct ccggtaattg agtcctttta aaaactgagt taatagtttc
     2761 taaattatga attgattcct caagtgaaga tactcagaat tgtcaaaact gatttatatt
     2821 gcaacttggt agactttata aatgtgtact tcaccagtta aaagtacata agaagcaatt
     2881 tttacagggt tgagtctact ccttgagaat gttacctaac aacaagaatt aatagtgccc
     2941 agttaaggat ttctagtgtt ataaaagtag aatgtattag agaggaggtg ccggagcaga
     3001 ttactgaagc tttaaaagac cgttggcctc atgttttgtt ttgtggtttt ttttgtgata
     3061 cgagggcctc tcactgctgt ggcctctccc gttgcggagc acaggctccg gacgtgcagg
     3121 ctcagcggcc atggctcacg ggcccagccg ctccgcggca tgtgggatct tcctggaccg
     3181 gggcacgaac ccgtgtcccc tgcatcggca ggcggactct caaccactgc gccgccaggg
     3241 aagcccggcc tcatgtttta atgcaactca tttattcatc tttggcgcat tggataaaac
     3301 tttaaaatta agcaggatat tttttttaat tgtagttcct tgaaatttga atgctctctt
     3361 tttgcctttc tacctaagat ttgccttgag ggatttgatt tcctcagcct tttgttaaga
     3421 gcacttcctc cgactcctaa aaaaactttt catctaaaat tataacgtgc tttggtttgg
     3481 tttttgtgag atctttggct aaacggaatt tgttttcatg ctagccttat cccaccacta
     3541 atgctctttt aaatgatttc atgtgtctga aaattagcac ttttatccac catcttttac
     3601 cttgactttt gcatagtttt aaagtaatcg gaataataat attgaatgaa tttgtttcac
     3661 ttacaaaata tgacagtttt taaatctttg ccttattcag ccttctcaga attctgcttc
     3721 ttactgatat tagatgtgta gccatttgct tggtgggata atccacaagg cacaccctct
     3781 aaaacttagc ttcactatga gatcttccag ataaaagttt tctacctctt ttcttaattc
     3841 ttctgacgat cagggatgct aaattataat ttgttatgca ttatcttaca taatgtgaag
     3901 aggcctgatg ttgtaaagtt ttattatctt ggtctcattt ttgattaagt atctcactta
     3961 gaaaaccaat ggtatgggaa ttccctggcg gtccagtggt taggactccg tgctttcatt
     4021 gccaagggca tgagttcaat cgttggttgg ggaactaagg tcccacaagg cgcatggcgt
     4081 ggccaaaaaa aaaaaaaccc aatggtatac tttaaagcac atgtatattt tagcatatct
     4141 tcttggcaaa tgtttcaaaa ttgagattta cttttagcac tttcacttgg tagagatagc
     4201 catataaaat taaggaatat gtaaacaatt taggagaaat gtacctttaa gaaacaattc
     4261 acaaaatatg cttgaaatca ttagatgaca tttcttgagt accttttgtg tgaataggtc
     4321 ttttaggcat tataagttat tgtggtcact gtagctcaaa agtgtttaat tttctattta
     4381 agccttaaaa atagcacttg tgagtttgtg agacttaatg tttggcgatc ataatgtgta
     4441 caagtgaata tgattgaata tctctttgta cctgtcatca ggtctaaaag gattttgtat
     4501 cttatttccc ccaaaaaata ttaaatttaa agctgtaggt taagagtata ccactgggtg
     4561 gcacccatca aattgagctt tatgcatcat tattcataaa ccttgccttc ctttcttaag
     4621 tatttcaggg gccaaacttg atacttgctt actggaattt tagagaagtc tattcatgca
     4681 acagatattt attgagtaat ttatgatgtc aggtatatat tgatgtttcc cagcataaat
     4741 ttctgttgct ttaaaattga gtatccttta tctatcaata catttgattt tttttttaat
     4801 tttaattgaa gtatagttaa tttacaatgt tgtgttagtt tcaggggtac agcaaagtga
     4861 gatatatata atttttcagt caatacattt gattttaatt taacaaattt ccaatttaac
     4921 aaatggaaag aaatagaacc tgatatttta taaaattaaa cctgttattt taagtggttt
     4981 tgtttgcata tttaagctta tgcttttata acaagtcaaa tatttattca ggggctctta
     5041 gtttattctg ttttacctgt taattaggtt gtgcattctt cagttggaca ctgatagatc
     5101 gctctcaatt atgacttttt aaattaatca gctgctgaaa ttcagcacta ggacttttaa
     5161 gtaatgttct gatcatgggg aattcaagat gaagcactat ttgcagatca tttaattatt
     5221 gaggatttaa aaacctaaac ttgtgctaat tctgaactca agcttgtaag cctcacagaa
     5281 cttagatgtt tttaattgta cttcttatac tcttgaaatt agtttattaa tgtctgtaaa
     5341 ttctaatctt gagaattttg aaatcttgca acaggattaa aagaaacttt ttcttaaatt
     5401 tgctgttgag tagagtgaaa cccctcttcc tattcattca gtttttgact gccatacaag
     5461 attttttttt ttttaattaa aacgaggata gtttacattg gtagcagaat gaatgaagat
     5521 tgtgctttcc catcccccac tcctcctttc ccttattctt ctttttctta ctcttctttg
     5581 gatttaaaga ttagatgtag ggcaatgaat gtacttctag atagagagag tgatttcaga
     5641 agttaatatc tctgggaatt ttgtgatgtg atagccacgt gaagacatca gtatggtaca
     5701 tcttctgtta gtggttcatg gttgatttct taatggtttt ccatgaatgg ataatgggca
     5761 cagtcaagtg atacccttga aaggtttggg ggctggtcag cttgaggctg ttggcaaaaa
     5821 ctaatatagt cataccactt gattattcca tgaagttcaa gtcccggcaa aatcataatc
     5881 aggaatgaat taacgtatta tttagctata catgcccgta aatgtgccta acttgcatgt
     5941 ctagcttatc ctttctatct tgtgtaggca ttaaaacatg aatgttgcaa gttgccctaa
     6001 ctgaacatag ttttctatgt ctgttttgaa aaaattgaat agggagtata gaagatgagc
     6061 agcagagtga ttttttgttt tctttatgtg tcaggtggcc ttcctaaact tccatatatt
     6121 aagattttta tgttctttca tgtattgaga acacacattt gttattattt gcagcacttt
     6181 aaaaatatga aataaaagtt tacatgttag ccctctccgg ggaccttgtc aaagacatta
     6241 aaatataatt ctggaactgc caactatcag ttcttcttaa tcaacagtta ccatcagtga
     6301 atagtgtatc caatggtaca atgttctggt gttttggtaa cagtagaact ccatttcagt
     6361 aactattagc agcatgctct gtgccctagc attcaaagtg ttactttttt ctataatgtg
     6421 attgttcttt attcattgta caaggcagta ttcaaatttg tccttgtagc acaaagatga
     6481 ctactacaac cctgaaaaga ttagattctt aaaacccttc atttgtttct aagcaaaacg
     6541 attttgagct gatttttgag tcaaaggcct taaaagcatc atgtgtaagc aacatcatta
     6601 agtctaaagt gaaacacttg atttgaataa gctagtttat taagtaaaga tgttttctta
     6661 ctaagagttg tggcatttcg gcacatttca tccaacttaa aagattataa agcttcccta
     6721 attgtggaaa agggtttgtt tgtttgtttt tccttctcca gaaattagtt ggcattttgt
     6781 ttacagtact ttgagtattt gactaagaag aaattattac attgatattg aattgtgggg
     6841 tgctgcttta ggtcttggtt gatagaattt agaggagatt ggtaaccctg ctgtgctgtt
     6901 tcagagtaaa gggagaaagg ggcaagaaga taaagtgcca cataaacaga agagatcctc
     6961 aaatgaatgc attcctagtc ttgaattatg cttttcagaa aatttttcaa gcaatgcctt
     7021 tgcatcacct taaccctcct cccccatttc ttggcataga atgtagcaag gccgtaatgg
     7081 aaaggcttgt cagtacagta taaaaccatg actacaagga ttttgctata atgctttttt
     7141 ttttttttcc tgcggtacgc gggcctctca ctgttgtggc ctctcccatt gcggagcaca
     7201 gttctccaga cgtgcaggct cagcggccat ggctcacggg cccagctgct ccgtggcatg
     7261 tgggatcttc ccggaccggg acatgaaccc gtgtcccctg catcagcagg cggactatca
     7321 tccactgcgt cagcagggaa gccctataat acttttttat acttgttttt aaaaatacaa
     7381 atctatgtct aagagtttag ggatagtgaa gatatgattt agttatgttg taggcaaaca
     7441 ggttaaccta agaaaggttt acaattccta ctaagattac atgagcgtga ctctgtactg
     7501 gtataggata tgtagttagt tgtagcctgt aagttactta aaaggaccag ggcacctaat
     7561 tcttgtcagt tttccagttc actttggtgc cattcatcac ataagttgtt tacaggaaat
     7621 ataatttcct tagcaaagag taactttttt tcctttaaaa aagtattaag tttaaaatac
     7681 agaataagta catatagttt gtcaaaagga atagagaatg acaatagtcc tatatttcct
     7741 atattaatgc agtagaggtt gaaattactg aagcaagaag aaacccataa aactgtcaaa
     7801 tttagagctt taaaatatga cttgaaaagt atagggaagg acaaacaaca aagttctctt
     7861 tcacttggca taagaaaata ttttttctta atgaagatgg acagtgcttt cttgttttaa
     7921 aaatattttg tctatttgcc agcatctttt caaagttaac gcactgctgc tacttgggag
     7981 atgtctgctt tcattttgta caactcttat gtgattttgc cattgtcatt aagatgcatt
     8041 gattttatgt ggtgtataat tttaaataca taaatattgt atgaattgac ttgttttaaa
     8101 ggaataaatg aagtgaaaat at
//
LOCUS       XM_032607019            2277 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus basic leucine zipper nuclear factor 1
            (BLZF1), mRNA.
ACCESSION   XM_032607019
VERSION     XM_032607019.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2277
                     /gene="BLZF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740920"
     CDS             391..1551
                     /gene="BLZF1"
                     /codon_start=1
                     /product="golgin-45"
                     /protein_id="XP_032462910.1"
                     /db_xref="GeneID:116740920"
                     /translation="MTTLESLETKVILTSSPIRGAGDGMETEEPPKSIEVTPGIQPIK
                     HHILPSPRKKAVPSESPGVLQLGKILAEKAVEVEAVRILVPKAAITHDIPNKNAKVKS
                     LGHDKGEFLGQPEGVEEPRKELSEVKNILEKLKNSERRLLQDKEGLSNQLRVQSEVNR
                     ELKKLLVASVGDDLQYHFERLAREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRS
                     KFLASRVMADELTNSRAVLQRQNRDAQSAIQDLLSEREQFRQEMIATQKLLEELLVSL
                     QWGREQTYYPNTQPHSTAELALTNHKLAKAVNSHLLGNVGTNGQKKFPSTVEFCSTPA
                     EKMAETVLRILDPVTCTEGSADNPFSESSPTTLTCLQRKILDDFIPIQDMKT"
     misc_feature    <751..>1173
                     /gene="BLZF1"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    934..1071
                     /gene="BLZF1"
                     /note="DASH complex subunit Hsk3 like; Region: DASH_Hsk3;
                     pfam08227"
                     /db_xref="CDD:429874"
ORIGIN      
        1 tcaaactaat acgcggctag ggtccaaata gtctacattt tattttttaa taagggttca
       61 tccggttttc acttactgaa gtcttacaga agatgttctg tgttacttga gtttaaacgc
      121 accacagagt gtgtttacct ttttcttttg gaaaagtatt ccggaaacga aaccctgagt
      181 aatcggaagt gattatttgt gaaccagaag cttgatgtca ccaaggcctg ggcgaattga
      241 cttccgagta cgagagttgt gtgtggagaa gttagcccag tgagatctag acgaagaacc
      301 tgtaaagtga gggcccctgc aataggaaga gtaagagtct gagaggtttt ttagtagaag
      361 tcttggggta catttttatt ggtgaaaaaa atgactactc ttgaaagttt agaaaccaaa
      421 gtcatcctta cttcatcccc aattcgagga gcgggagatg gaatggaaac tgaggaacca
      481 cctaaatcta ttgaagttac tcctggaatc caacctataa agcatcacat ccttccaagt
      541 ccacgaaaga aagcagttcc atcagagagc ccaggcgttc ttcagctagg gaagattctc
      601 gctgaaaaag cagtggaagt cgaagctgta agaatattag ttcccaaagc cgctataacc
      661 catgatatcc ccaacaaaaa tgcaaaggtt aagtctctgg gacatgataa aggagaattc
      721 cttggccagc cagagggagt tgaagaaccc agaaaggaac tatccgaggt aaagaatata
      781 ttggaaaagc tcaagaactc tgaaaggagg ttactacagg acaaagaagg tctttcaaac
      841 cagctcagag tacagtcaga ggtcaatcgt gagttaaaaa agctgctggt ggcttctgtt
      901 ggggatgatc ttcaatatca ctttgaacgt ctagcccgtg agaaaaatca gcttatttta
      961 gaaaacgaag ccctaggtcg aaacacagct cagctttccg aacagttaga acggatgtcc
     1021 atacagtgtg atgtgtggcg aagtaaattc cttgcaagca gggttatggc agatgagtta
     1081 accaactcca gagcggtttt acagcgtcaa aaccgtgatg cacagagtgc tatacaagat
     1141 ctcctgagtg aacgggaaca gtttcgtcag gaaatgatag ctacgcagaa gttgttggag
     1201 gagctcttgg tctccttgca gtggggaaga gagcaaactt actaccctaa cacgcaacct
     1261 cacagcacag cagaactagc gttaacaaat cacaagttgg caaaagcagt aaattctcat
     1321 cttctgggaa atgttggcac taatggtcaa aaaaagtttc catcaacagt tgaattctgc
     1381 agcaccccag cagaaaaaat ggctgaaacg gttctacgca ttttggatcc agtaacctgt
     1441 acagagggct cagctgataa tccattttct gagtcttcac caaccaccct tacttgctta
     1501 caaagaaaaa tattggacga tttcatccct atacaagata tgaaaacata actttcaatt
     1561 gctgcagtaa ctgccaggga gaacttactg ccctttaaca gggattccat attttgaatg
     1621 gatgcaactt gatatacaga agaaacattc taactattaa gctcattttg acaattgcag
     1681 cacaacagga gtatccaatt tgatacttat gaaatatggc agagaaagta ggatcttcgg
     1741 gcttccctgg tggtgcagtg gttgagagtc cgcctgccaa tgcaggggac acgggttcgt
     1801 gccccggtcc gggaggatcc tgcatgccat ggagcggctg ggcccgtgag ccatggccgc
     1861 tgagcctgca cttccggagc ctgtgctctg caatgggaga ggctgcagca gtgagaggcc
     1921 cgcgtaccgc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaag taggatcttt
     1981 ctagaacatt gttcaaactc aaaaatgcaa ttcatcaatt tttatgtcat atatattatt
     2041 atttacttat gaccggctat catcaaacat ccttttatat acctttaaaa atgtccacaa
     2101 aatgtttata ccaaattacc ctaactggtt gcagaagtgc ctatcagtaa agaaatcctc
     2161 aaaagacaaa tatgatcaaa taacaatatt tcttaatgtc aacttaatga ttttgttttg
     2221 ttttggtctg attcatctga gttatagttt caagtggcaa taaatttctc tgccttc
//
LOCUS       XM_032607031            2429 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus podoplanin (PDPN), transcript variant X1,
            mRNA.
ACCESSION   XM_032607031
VERSION     XM_032607031.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2429
                     /gene="PDPN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740927"
     CDS             19..726
                     /gene="PDPN"
                     /codon_start=1
                     /product="podoplanin isoform X1"
                     /protein_id="XP_032462922.1"
                     /db_xref="GeneID:116740927"
                     /translation="MPTLIRKFPTAKFAPPADAAGEGTRGPLPRWDFCSPHFPAPSLS
                     LHQARASGCFIIFPQHRNELLGPAKNKSTKKMWKVPVLFFVLGRASLWVLADGSTVRP
                     EDDMTTGVENTKATLGVEDYMVTPGASGEPHESAGLTALMPTRAKSTTEDHKEDLPTA
                     ESTAHSQGQSQSTTTLNVATRPSPGKTDGEKPTVEKGGLSTMTLTGIIVGVLLAIGFI
                     GGIITVFVRKMSGRYSP"
     misc_feature    322..720
                     /gene="PDPN"
                     /note="Region: Podoplanin; pfam05808"
                     /db_xref="CDD:461746"
ORIGIN      
        1 cctcgtcggg agagataaat gccgactctg atccgaaagt tcccaactgc aaagtttgct
       61 cctccggctg acgctgcggg cgaaggaact cggggacccc tcccgcgctg ggacttctgc
      121 tccccgcatt ttccagcccc cagtctctcg ctccatcaag cgagggcctc tggctgtttc
      181 ataatcttcc cccagcacag aaacgagctg ctcggccccg caaagaacaa gtcaactaag
      241 aaaatgtgga aggtgccagt tctgttcttc gttttgggac gcgcatcgct ctgggtcctg
      301 gcagatggca gcacggtccg gccagaagat gacatgacta caggtgtgga aaataccaag
      361 gcgaccctgg gtgtggaaga ttacatggtg acaccaggtg ccagtggaga gccccatgag
      421 tctgctggct tgacagctct gatgccgaca agagcaaaga gcacaacaga ggatcacaaa
      481 gaggacctgc caactgcaga aagcacagcc cactcccaag gacaaagcca gagcaccaca
      541 accctgaatg tggcaactcg tccgtccccg gggaaaacag atggagaaaa accaacagtt
      601 gagaaaggtg gcttgtcaac aatgaccctg actggaatca tagtcggggt cttactagcc
      661 attggattca ttggtggaat catcactgtg tttgttcgaa aaatgtcagg aaggtactcg
      721 ccctaaagag cttaagaatt gtgccctcct gccaatatgt ttttaaaaag agagtttccg
      781 acttccccct catgcctgac cgtgtggagg agatgacctg tggaaatgct tcaccactcc
      841 actcaaaatc cacggtgatt cctccacttg ccaaaagtaa tggaaggaaa gagtattcaa
      901 gtattcataa gacttgcttc tctaagcatt tgtcttttga aaaaaaaatt gttttaatat
      961 aagttttgta taagatgatt taaaatgcat agaaaacgga gcaaagctat gtcatctgat
     1021 gtgtaactaa ggtagacaat ataattcaat cgatgttaga aactgaaatc atgtctttgt
     1081 tctgattgtt ctctcttgtt gttaaaacgc aaaggaattt ggaaatattt ataccaacgg
     1141 cgtccttggg tgtaaagcta tgtcagtaag tggcataagc attttgcagt ttctgatctg
     1201 ttgaaatgta tacattccag tctaattggg tctgttttta aagcctgatt tggggtgaat
     1261 aatcaagtag aaaatctaaa cttgcatatg taatgagcaa ccgcctttca ctggtctggg
     1321 taaatcattt caaaggcgtc ttttagatca tacacagaag tctgtacttt ggggaaggca
     1381 ttttgtgtct cacaacaagg gcaccgacag ggtctcagtg tgctcggctg cctgccccaa
     1441 tgatgactgt atgaagcaaa ggtttgcttc tacctgcccc cttccacctc cctcagatga
     1501 tggggatcca gagctaaagg ggtgaccttc tctcttcccc atgacacaag tcctccagat
     1561 tggctacttc gctctggaat atgaggatct cagccctgga tgccgaggag gctgctgaag
     1621 gcccaatagt gccagaggct caggtgttcc aggaaccaag aaccacagtg atccccaaac
     1681 cctgtgtgtg cctttgagaa agagaacctg ccggtttcct aacgtttact ttctgcctcg
     1741 gaagaaagat acgggaatac tgatttttac aaagcagctg gatttagaga atgaaagata
     1801 tttctggtct tcctgagatc ccacatactt ctgtggggtc acaatggaca gttctgtctt
     1861 ggcaccatcc aactcaggac atttctccct ataggtgaac tgaattcttt ctcctgcaca
     1921 aaaaatgttt gtactgagca gacgctgtat cacagtgtgg ttgcacagtt ctgatagcct
     1981 ctaaacttgt acgggttcat aaaacaggaa aaagtaaaac tatcagtcta ctttggcatg
     2041 gcctgttcct ctgccttttg caggaatgtg tggatgtaat tttaaacagt gtgctctagt
     2101 gtcgctcaag tccagctggt ccaccagccc aggttccata tttgaacatc aactgatggg
     2161 gagaagggtc tttggaagaa ctttacgaaa tctcttaaat atcccctgta tcatcgctca
     2221 gattcctgaa caggagttgg gaataatgtt cgtttcatct ttcctatcct ctcttttttt
     2281 ctctcactgt gaaagataat agtcaacccc aagtcacaca ctggacccat cacctgctgg
     2341 gacgggactg tgggtttcct ggtcacatct gtgttggtgc tcaatgcagt gtagacatgt
     2401 tttgaaataa aacagatgat tgcgtataa
//
LOCUS       XM_032607040            2423 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus podoplanin (PDPN), transcript variant X2,
            mRNA.
ACCESSION   XM_032607040
VERSION     XM_032607040.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2423
                     /gene="PDPN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740927"
     CDS             19..720
                     /gene="PDPN"
                     /codon_start=1
                     /product="podoplanin isoform X2"
                     /protein_id="XP_032462931.1"
                     /db_xref="GeneID:116740927"
                     /translation="MPTLIRKFPTAKFAPPADAAGEGTRGPLPRWDFCSPHFPAPSLS
                     LHQARASGCFIIFPQHRNELLGPAKNKSTKKMWKVPVLFFVLGRASLWVLADGSTVRP
                     EDDMTTGVENTKATLGVEDYMVTPGASGEPHESAGLTALMPTRAKSTTEDHKEDLPTA
                     ESTAHSQGQSQSTTTLNVATRPSPGKTDGEKPTVEKGGLSTMTLTGIIVGVLLAIGFI
                     GGIITVFVRKMSGRP"
     misc_feature    322..714
                     /gene="PDPN"
                     /note="Region: Podoplanin; pfam05808"
                     /db_xref="CDD:461746"
ORIGIN      
        1 cctcgtcggg agagataaat gccgactctg atccgaaagt tcccaactgc aaagtttgct
       61 cctccggctg acgctgcggg cgaaggaact cggggacccc tcccgcgctg ggacttctgc
      121 tccccgcatt ttccagcccc cagtctctcg ctccatcaag cgagggcctc tggctgtttc
      181 ataatcttcc cccagcacag aaacgagctg ctcggccccg caaagaacaa gtcaactaag
      241 aaaatgtgga aggtgccagt tctgttcttc gttttgggac gcgcatcgct ctgggtcctg
      301 gcagatggca gcacggtccg gccagaagat gacatgacta caggtgtgga aaataccaag
      361 gcgaccctgg gtgtggaaga ttacatggtg acaccaggtg ccagtggaga gccccatgag
      421 tctgctggct tgacagctct gatgccgaca agagcaaaga gcacaacaga ggatcacaaa
      481 gaggacctgc caactgcaga aagcacagcc cactcccaag gacaaagcca gagcaccaca
      541 accctgaatg tggcaactcg tccgtccccg gggaaaacag atggagaaaa accaacagtt
      601 gagaaaggtg gcttgtcaac aatgaccctg actggaatca tagtcggggt cttactagcc
      661 attggattca ttggtggaat catcactgtg tttgttcgaa aaatgtcagg aaggccctaa
      721 agagcttaag aattgtgccc tcctgccaat atgtttttaa aaagagagtt tccgacttcc
      781 ccctcatgcc tgaccgtgtg gaggagatga cctgtggaaa tgcttcacca ctccactcaa
      841 aatccacggt gattcctcca cttgccaaaa gtaatggaag gaaagagtat tcaagtattc
      901 ataagacttg cttctctaag catttgtctt ttgaaaaaaa aattgtttta atataagttt
      961 tgtataagat gatttaaaat gcatagaaaa cggagcaaag ctatgtcatc tgatgtgtaa
     1021 ctaaggtaga caatataatt caatcgatgt tagaaactga aatcatgtct ttgttctgat
     1081 tgttctctct tgttgttaaa acgcaaagga atttggaaat atttatacca acggcgtcct
     1141 tgggtgtaaa gctatgtcag taagtggcat aagcattttg cagtttctga tctgttgaaa
     1201 tgtatacatt ccagtctaat tgggtctgtt tttaaagcct gatttggggt gaataatcaa
     1261 gtagaaaatc taaacttgca tatgtaatga gcaaccgcct ttcactggtc tgggtaaatc
     1321 atttcaaagg cgtcttttag atcatacaca gaagtctgta ctttggggaa ggcattttgt
     1381 gtctcacaac aagggcaccg acagggtctc agtgtgctcg gctgcctgcc ccaatgatga
     1441 ctgtatgaag caaaggtttg cttctacctg cccccttcca cctccctcag atgatgggga
     1501 tccagagcta aaggggtgac cttctctctt ccccatgaca caagtcctcc agattggcta
     1561 cttcgctctg gaatatgagg atctcagccc tggatgccga ggaggctgct gaaggcccaa
     1621 tagtgccaga ggctcaggtg ttccaggaac caagaaccac agtgatcccc aaaccctgtg
     1681 tgtgcctttg agaaagagaa cctgccggtt tcctaacgtt tactttctgc ctcggaagaa
     1741 agatacggga atactgattt ttacaaagca gctggattta gagaatgaaa gatatttctg
     1801 gtcttcctga gatcccacat acttctgtgg ggtcacaatg gacagttctg tcttggcacc
     1861 atccaactca ggacatttct ccctataggt gaactgaatt ctttctcctg cacaaaaaat
     1921 gtttgtactg agcagacgct gtatcacagt gtggttgcac agttctgata gcctctaaac
     1981 ttgtacgggt tcataaaaca ggaaaaagta aaactatcag tctactttgg catggcctgt
     2041 tcctctgcct tttgcaggaa tgtgtggatg taattttaaa cagtgtgctc tagtgtcgct
     2101 caagtccagc tggtccacca gcccaggttc catatttgaa catcaactga tggggagaag
     2161 ggtctttgga agaactttac gaaatctctt aaatatcccc tgtatcatcg ctcagattcc
     2221 tgaacaggag ttgggaataa tgttcgtttc atctttccta tcctctcttt ttttctctca
     2281 ctgtgaaaga taatagtcaa ccccaagtca cacactggac ccatcacctg ctgggacggg
     2341 actgtgggtt tcctggtcac atctgtgttg gtgctcaatg cagtgtagac atgttttgaa
     2401 ataaaacaga tgattgcgta taa
//
LOCUS       XM_032607053            3274 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell division cycle 7 (CDC7), transcript
            variant X1, mRNA.
ACCESSION   XM_032607053
VERSION     XM_032607053.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3274
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3274
                     /gene="CDC7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740936"
     CDS             191..1912
                     /gene="CDC7"
                     /codon_start=1
                     /product="cell division cycle 7-related protein kinase
                     isoform X1"
                     /protein_id="XP_032462944.1"
                     /db_xref="GeneID:116740936"
                     /translation="MEASLGIQMQEPTAFSTRGRFLADGSLKHEQNFKLPGVKKDIQK
                     LYEAVPQLGNVFKIKDKIGEGTFSSVYLATTQLKVGPEEKIALKHLIPTSHPVRIAAE
                     LQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMFNLF
                     KALKRIHQFGIVHRDVKPSNFLYNRRLRKYALVDFGLAQGTHDTKIELLKFVQSEAQQ
                     ESCSQNKSYVITGNKISLSSPAAPKELDQQPTTKTAVKRPYTSAQIQIKQGKDGKEGS
                     VGLSVQRSVFGERNFNIHSSISHESPAVKLMKQSKTVDLLSRKLATKKKAISTKVMNS
                     SVMRKTASSCPASLTCDCYATDKVCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTT
                     AIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSK
                     EVPAQDLRKLCEKLRGVNSNTPKLTSDIQELTSQDPTFSEKMDHKGAHLIQTPKAQHS
                     GNSLCKGDSNGCGGNLDESPTNLEGWDEVPDAAYDLLDKLLDLNPASRITAEEALLHP
                     FFKDMGL"
     misc_feature    350..1501
                     /gene="CDC7"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Cell Division Cycle 7 kinase; Region: STKc_Cdc7; cd14019"
                     /db_xref="CDD:270921"
     misc_feature    order(374..388,398..400,446..448,452..454,482..484,
                     536..538,584..595,605..607,611..616,713..715,719..721,
                     725..730,734..736,770..772,779..781,1298..1300,1304..1315,
                     1319..1321,1436..1438)
                     /gene="CDC7"
                     /note="active site"
                     /db_xref="CDD:270921"
     misc_feature    order(374..385,392..394,398..400,446..448,452..454,
                     536..538,584..595,599..601,725..730,734..736,770..772)
                     /gene="CDC7"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270921"
     misc_feature    order(482..484,611..613,713..715,719..721,779..781,
                     1298..1300,1304..1315,1319..1321,1436..1438)
                     /gene="CDC7"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270921"
     misc_feature    order(767..799,1283..1321)
                     /gene="CDC7"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270921"
     misc_feature    <1064..>1444
                     /gene="CDC7"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    <1322..1900
                     /gene="CDC7"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
ORIGIN      
        1 caacgcgaga agtgttgcgc aggcgcgttt ggcggactcg ctaggtgggc gctctcggag
       61 gcggcgacgt aggcctttgg ggagccagag aaatcgtatt cctttaaacc tattccgagt
      121 ttcacagctg ctttgctccc cctgtggaca tgacccctta gctggcgttt tgcgccgcag
      181 tcgctttgcg atggaggctt ctttagggat tcagatgcag gagccaacgg ctttttctac
      241 tcgtggccgg tttctggcgg atggctcatt aaaacatgag cagaatttta aactaccagg
      301 tgttaagaaa gatattcaga agctttatga agctgtacca cagcttggta atgtgtttaa
      361 gattaaggac aaaattggag aaggcacttt cagctctgtg tatttggcca caacacagtt
      421 aaaagtagga cctgaagaga aaattgctct gaaacactta attccaacaa gtcatcctgt
      481 aagaattgca gctgagcttc agtgcctaac agtggctggg gggcaagaca atgtcatggg
      541 agttaaatac tgctttagga aaaatgatca tgtggttatt gctatgccat atctggaaca
      601 tgagtccttt ttggacattt tgaattctct ttcttttcaa gaagtacggg aatatatgtt
      661 taatctgttc aaagctttga aacgcattca tcagtttggt attgttcacc gtgatgttaa
      721 gcccagcaat tttttatata ataggcgctt gagaaagtat gccttggtag actttggttt
      781 ggcccaagga acccacgata cgaaaataga gcttctcaaa tttgtccagt ctgaagctca
      841 gcaggaaagc tgttcacaaa ataaatccta tgtaatcacc ggaaacaaaa tttcattgag
      901 cagcccagca gcacctaagg agctggatca gcagcctacc acaaaaactg ctgttaaaag
      961 gccctacaca agtgcacaga ttcagattaa acaaggaaaa gatggaaagg agggatctgt
     1021 aggcctttct gtccagcgct ctgtttttgg agagagaaat ttcaatatac acagctccat
     1081 ttcacatgag agccctgcag tgaaacttat gaagcagtca aagactgtgg atttactatc
     1141 tagaaaatta gcaacaaaaa agaaggctat ttctacaaaa gttatgaata gtagtgtgat
     1201 gaggaaaact gccagttctt gcccagctag cctgacctgt gactgttatg caacagataa
     1261 agtttgcagt atttgccttt caaggcggca gcaggttgca cctagggcag gtacaccagg
     1321 attcagagca ccagaggtct tgacaaagtg ccccaaccaa actacagcaa ttgacatgtg
     1381 gtctgcaggt gtcatattcc tttctttgct tagtggacga tatccatttt ataaagcaag
     1441 tgatgattta accgctttgg ctcaaattat gacaattcgt ggatccaggg aaactatcca
     1501 ggctgctaaa acttttggca aatcaatatt gtgtagcaaa gaagttccag cacaagactt
     1561 gagaaaactc tgtgagaagc tcagaggtgt aaattctaac actcctaaac taacaagtga
     1621 tatacaagag ctcacttctc aagacccaac tttttcagag aagatggacc ataaaggtgc
     1681 tcacctcata caaacaccta aagcacagca ctcagggaat tcattgtgta aaggggacag
     1741 taatggctgt gggggtaatc ttgatgagtc tcctaccaat ctagaaggct gggatgaggt
     1801 acctgatgca gcttacgacc tgcttgataa actcctagat ctaaatccgg cttcaagaat
     1861 aacagcagaa gaagctttgt tgcatccatt tttcaaagat atgggcttat gattattgtt
     1921 ctttaaagtt tgctgttgtg tattgtgagg tgaggtgaaa aagagttatt tgtaatagcc
     1981 ataaattctt gattggagac ccgggcaggg tgaataattt gtttaaaaat ctcctgacag
     2041 attctaaaat atggattaag attacttaaa atgactagga tagttcttag actaacaaaa
     2101 tgatctttga gtttgatcta cccgagtagg atcagatctt tcatttccct aattacttgt
     2161 cactgccata tgcagaaata agagcagttt tagcctagta catagaggtt caaggtacga
     2221 gtcttaaaat taagggttgt gacaggaatt aaatgagtca aaagacttag tttactggtt
     2281 tcttcaaact atctgtactt ttggaaaact acctggtgct ggtactctaa ccattctgta
     2341 ggtaaagaag ataatttcct tttctagagg cttatattat accttttatg aacactaaaa
     2401 caatgagaaa atattggggg gatattactt aaaattgaat ttaatttatt cattttttaa
     2461 aagtattttg tgaaagcatt ttttgtgtga attgccatgt ttttcttaat ggtttctctt
     2521 gatttttctg ccttctctac ccccacctaa cacattctcc ttggaaattt tatgatactt
     2581 tccacaaagt ttctgggtgc tttgttaaat attgcctgtg ttcacagttg agaaattaaa
     2641 ataatgtgtt cactggttga taaagggaag ctgcaggact aaggtagata ttgatagtcc
     2701 aaaatgcttt tctttttctc taaacatgta tggttttttc ataccatctt aggtagctgc
     2761 taaaaggaaa agtgaacaca gaattgagaa tattattgga gacttttcct ctgcctagag
     2821 ccattctata tcctgttttg accaagttgg tcctgctcag agaaggatgc ttacctagtg
     2881 tcttggggta gggtgggaag agttctaatg aagtaggcaa tgtagaaaag gaactaagat
     2941 aggggtttat atattacgac atttcaaaat gatatatata tcaatgacag catatcaaat
     3001 ttactatggg aaataagtct gcgagtgtgg gtctgctgag aagtttccca cttagtagtc
     3061 atagaggtat aatacagcta aagaagatac aacattcttt ttgttgtttt gagcactgaa
     3121 gttagtatgt cttatctgta ctctgtttgg caagtattat atatatatat accattacca
     3181 ttgatctgct atcttctcat gctgtaatct ttttttaaaa aacttgaatg ttcttgaatt
     3241 tgtatgttta ataaagtcat ccttttatat tttt
//
LOCUS       XM_032607060            3178 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell division cycle 7 (CDC7), transcript
            variant X2, mRNA.
ACCESSION   XM_032607060
VERSION     XM_032607060.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3178
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3178
                     /gene="CDC7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116740936"
     CDS             191..1816
                     /gene="CDC7"
                     /codon_start=1
                     /product="cell division cycle 7-related protein kinase
                     isoform X2"
                     /protein_id="XP_032462951.1"
                     /db_xref="GeneID:116740936"
                     /translation="MEASLGIQMQEPTAFSTRGRFLADGSLKHEQNFKLPGVKKDIQK
                     LYEAVPQLGNVFKIKDKIGEGTFSSVYLATTQLKVGPEEKIALKHLIPTSHPVRIAAE
                     LQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMFNLF
                     KALKRIHQFGIVHRDVKPSNFLYNRRLRKYALVDFGLAQGTHDTKIELLKFVQSEAQQ
                     ESCSQNKSYVITGNKISLSSPAAPKELDQQPTTKTAVKRPYTSAQIQIKQGKDGKLMK
                     QSKTVDLLSRKLATKKKAISTKVMNSSVMRKTASSCPASLTCDCYATDKVCSICLSRR
                     QQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALA
                     QIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCEKLRGVNSNTPKLTSDIQELT
                     SQDPTFSEKMDHKGAHLIQTPKAQHSGNSLCKGDSNGCGGNLDESPTNLEGWDEVPDA
                     AYDLLDKLLDLNPASRITAEEALLHPFFKDMGL"
     misc_feature    350..1405
                     /gene="CDC7"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Cell Division Cycle 7 kinase; Region: STKc_Cdc7; cd14019"
                     /db_xref="CDD:270921"
     misc_feature    order(374..388,398..400,446..448,452..454,482..484,
                     536..538,584..595,605..607,611..616,713..715,719..721,
                     725..730,734..736,770..772,779..781,1202..1204,1208..1219,
                     1223..1225,1340..1342)
                     /gene="CDC7"
                     /note="active site"
                     /db_xref="CDD:270921"
     misc_feature    order(374..385,392..394,398..400,446..448,452..454,
                     536..538,584..595,599..601,725..730,734..736,770..772)
                     /gene="CDC7"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270921"
     misc_feature    order(482..484,611..613,713..715,719..721,779..781,
                     1202..1204,1208..1219,1223..1225,1340..1342)
                     /gene="CDC7"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270921"
     misc_feature    order(767..799,1187..1225)
                     /gene="CDC7"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270921"
     misc_feature    <1163..>1795
                     /gene="CDC7"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
ORIGIN      
        1 caacgcgaga agtgttgcgc aggcgcgttt ggcggactcg ctaggtgggc gctctcggag
       61 gcggcgacgt aggcctttgg ggagccagag aaatcgtatt cctttaaacc tattccgagt
      121 ttcacagctg ctttgctccc cctgtggaca tgacccctta gctggcgttt tgcgccgcag
      181 tcgctttgcg atggaggctt ctttagggat tcagatgcag gagccaacgg ctttttctac
      241 tcgtggccgg tttctggcgg atggctcatt aaaacatgag cagaatttta aactaccagg
      301 tgttaagaaa gatattcaga agctttatga agctgtacca cagcttggta atgtgtttaa
      361 gattaaggac aaaattggag aaggcacttt cagctctgtg tatttggcca caacacagtt
      421 aaaagtagga cctgaagaga aaattgctct gaaacactta attccaacaa gtcatcctgt
      481 aagaattgca gctgagcttc agtgcctaac agtggctggg gggcaagaca atgtcatggg
      541 agttaaatac tgctttagga aaaatgatca tgtggttatt gctatgccat atctggaaca
      601 tgagtccttt ttggacattt tgaattctct ttcttttcaa gaagtacggg aatatatgtt
      661 taatctgttc aaagctttga aacgcattca tcagtttggt attgttcacc gtgatgttaa
      721 gcccagcaat tttttatata ataggcgctt gagaaagtat gccttggtag actttggttt
      781 ggcccaagga acccacgata cgaaaataga gcttctcaaa tttgtccagt ctgaagctca
      841 gcaggaaagc tgttcacaaa ataaatccta tgtaatcacc ggaaacaaaa tttcattgag
      901 cagcccagca gcacctaagg agctggatca gcagcctacc acaaaaactg ctgttaaaag
      961 gccctacaca agtgcacaga ttcagattaa acaaggaaaa gatggaaagc ttatgaagca
     1021 gtcaaagact gtggatttac tatctagaaa attagcaaca aaaaagaagg ctatttctac
     1081 aaaagttatg aatagtagtg tgatgaggaa aactgccagt tcttgcccag ctagcctgac
     1141 ctgtgactgt tatgcaacag ataaagtttg cagtatttgc ctttcaaggc ggcagcaggt
     1201 tgcacctagg gcaggtacac caggattcag agcaccagag gtcttgacaa agtgccccaa
     1261 ccaaactaca gcaattgaca tgtggtctgc aggtgtcata ttcctttctt tgcttagtgg
     1321 acgatatcca ttttataaag caagtgatga tttaaccgct ttggctcaaa ttatgacaat
     1381 tcgtggatcc agggaaacta tccaggctgc taaaactttt ggcaaatcaa tattgtgtag
     1441 caaagaagtt ccagcacaag acttgagaaa actctgtgag aagctcagag gtgtaaattc
     1501 taacactcct aaactaacaa gtgatataca agagctcact tctcaagacc caactttttc
     1561 agagaagatg gaccataaag gtgctcacct catacaaaca cctaaagcac agcactcagg
     1621 gaattcattg tgtaaagggg acagtaatgg ctgtgggggt aatcttgatg agtctcctac
     1681 caatctagaa ggctgggatg aggtacctga tgcagcttac gacctgcttg ataaactcct
     1741 agatctaaat ccggcttcaa gaataacagc agaagaagct ttgttgcatc catttttcaa
     1801 agatatgggc ttatgattat tgttctttaa agtttgctgt tgtgtattgt gaggtgaggt
     1861 gaaaaagagt tatttgtaat agccataaat tcttgattgg agacccgggc agggtgaata
     1921 atttgtttaa aaatctcctg acagattcta aaatatggat taagattact taaaatgact
     1981 aggatagttc ttagactaac aaaatgatct ttgagtttga tctacccgag taggatcaga
     2041 tctttcattt ccctaattac ttgtcactgc catatgcaga aataagagca gttttagcct
     2101 agtacataga ggttcaaggt acgagtctta aaattaaggg ttgtgacagg aattaaatga
     2161 gtcaaaagac ttagtttact ggtttcttca aactatctgt acttttggaa aactacctgg
     2221 tgctggtact ctaaccattc tgtaggtaaa gaagataatt tccttttcta gaggcttata
     2281 ttataccttt tatgaacact aaaacaatga gaaaatattg gggggatatt acttaaaatt
     2341 gaatttaatt tattcatttt ttaaaagtat tttgtgaaag cattttttgt gtgaattgcc
     2401 atgtttttct taatggtttc tcttgatttt tctgccttct ctacccccac ctaacacatt
     2461 ctccttggaa attttatgat actttccaca aagtttctgg gtgctttgtt aaatattgcc
     2521 tgtgttcaca gttgagaaat taaaataatg tgttcactgg ttgataaagg gaagctgcag
     2581 gactaaggta gatattgata gtccaaaatg cttttctttt tctctaaaca tgtatggttt
     2641 tttcatacca tcttaggtag ctgctaaaag gaaaagtgaa cacagaattg agaatattat
     2701 tggagacttt tcctctgcct agagccattc tatatcctgt tttgaccaag ttggtcctgc
     2761 tcagagaagg atgcttacct agtgtcttgg ggtagggtgg gaagagttct aatgaagtag
     2821 gcaatgtaga aaaggaacta agataggggt ttatatatta cgacatttca aaatgatata
     2881 tatatcaatg acagcatatc aaatttacta tgggaaataa gtctgcgagt gtgggtctgc
     2941 tgagaagttt cccacttagt agtcatagag gtataataca gctaaagaag atacaacatt
     3001 ctttttgttg ttttgagcac tgaagttagt atgtcttatc tgtactctgt ttggcaagta
     3061 ttatatatat atataccatt accattgatc tgctatcttc tcatgctgta atcttttttt
     3121 aaaaaacttg aatgttcttg aatttgtatg tttaataaag tcatcctttt atattttt
//
LOCUS       XM_032607073            1440 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus growth arrest and DNA damage inducible
            alpha (GADD45A), transcript variant X1, mRNA.
ACCESSION   XM_032607073
VERSION     XM_032607073.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1440
                     /gene="GADD45A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 9 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740948"
     CDS             277..774
                     /gene="GADD45A"
                     /codon_start=1
                     /product="growth arrest and DNA damage-inducible protein
                     GADD45 alpha isoform X1"
                     /protein_id="XP_032462964.1"
                     /db_xref="GeneID:116740948"
                     /translation="MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAA
                     KLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDIDILRVSNPGRLAELL
                     LLESDAGPALSEGAEQPPDLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVI
                     NLPER"
     misc_feature    337..645
                     /gene="GADD45A"
                     /note="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family;
                     Region: Ribosomal_L7Ae; pfam01248"
                     /db_xref="CDD:426153"
ORIGIN      
        1 gttggctggg ggttggcagg ataactccgg cgaggggggc ctttgtcctt cagtggctgt
       61 gaggcagctg ccgcgtcgct atagtagacc gtggcgaggc ggggggccga gagccggcgg
      121 gcgagcgagc gagggggcag gaggggcgga cggcgcggcg gcggcgggcg ctggaggagc
      181 ctgagaagga gtgcagaaag caggcacccg cgcgcccacg gtggcaggag cagcccgcaa
      241 gccgctctct ctctgtaggg cacctgcagt tgcaatatga ctttggagga attctcggct
      301 ggagagcaga agaccgaaag gatggataag gtgggggatg ccctcgagga agtgctcagc
      361 aaagccctga gtcagcgcac catcaccgtc ggggtgtacg aggcggccaa gctgctcaac
      421 gtcgaccccg ataacgtggt gctgtgcctg ctggcggcgg acgaggacga cgatagggac
      481 gtggctctgc agatccactt caccctgatc caggcgttct gctgcgagaa cgacatagac
      541 atcctgcgcg tcagcaaccc tggccggctg gccgagctcc tgctcctgga gagtgacgcg
      601 ggccccgcgt tgagcgaggg cgcggagcag cccccggact tgcactgcgt gctggtgacg
      661 aatccacatt catcacagtg gaaggatcct gccttaagtc aacttatttg tttttgccgg
      721 gaaagtcgct acatggatca gtgggttcca gtgattaatc tccctgaacg gtgatggcat
      781 ctgaatgaaa ataactgaac caaattgcac tgaagttttg aaataccttt gtagttactc
      841 aagcagttac tccctacact gatgcaagga ttacagaaac tgatgtcaag gggctgagtg
      901 agttcaacta catgttctgg gagcccggag atagatgact ttgcagatgg aaagaggtga
      961 aaatgaagaa ggaagctgtg tggaaacaga aatacaagtc aaaaggaaca aaaattacaa
     1021 agaaccacgc aggaaggaaa acaaaactat gtattaattt aggatggttg agttacattt
     1081 aaataaacca aatatgcttt gttaaagttt aaatgtgcgg cagtagtttg ggtaattttg
     1141 gtttatatgc cctcaagtaa aaaagaaaaa agcagaaagg gttaatcata ttttaaaacc
     1201 atattttatt gtattttgat gagatgttaa attctcaaag ttttattata aattgtacta
     1261 agttatttta tgacatgaaa ggttatttat gctataaatt ttttgaaaca caatacttaa
     1321 caataaactg gtatggaata attgcatcat ttctttatgt gtgttttgtt tcttttaact
     1381 tggactttct tttaaagaag tttcttttta atatggaaaa attaaaaccc ttgtgaaatc
//
LOCUS       XM_032607082            1366 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus growth arrest and DNA damage inducible
            alpha (GADD45A), transcript variant X2, mRNA.
ACCESSION   XM_032607082
VERSION     XM_032607082.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1366
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1366
                     /gene="GADD45A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740948"
     CDS             342..794
                     /gene="GADD45A"
                     /codon_start=1
                     /product="growth arrest and DNA damage-inducible protein
                     GADD45 alpha isoform X2"
                     /protein_id="XP_032462973.1"
                     /db_xref="GeneID:116740948"
                     /translation="MDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLL
                     AADEDDDRDVALQIHFTLIQAFCCENDIDILRVSNPGRLAELLLLESDAGPALSEGAE
                     QPPDLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER"
     misc_feature    357..665
                     /gene="GADD45A"
                     /note="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family;
                     Region: Ribosomal_L7Ae; pfam01248"
                     /db_xref="CDD:426153"
ORIGIN      
        1 ggctgtgagg cagctgccgc gtcgctatag tagaccgtgg cgaggcgggg ggccgagagc
       61 cggcgggcga gcgagcgagg gggcaggagg ggcggacggc gcggcggcgg cgggcgctgg
      121 aggagcctga gaaggagtgc agaaagcagg cacccgcgcg cccacggtgg caggagcagc
      181 ccgcaagccg ctctctctct gtagggcacc tgcagttgca atatgacttt ggaggaattc
      241 tcggctggag agcagaagac cgaaaggcaa gtcagccgga gcttctccct gaactctgct
      301 tgcccactcc gcgcacccca gtgctgccgg gctgtgcaag gatggataag gtgggggatg
      361 ccctcgagga agtgctcagc aaagccctga gtcagcgcac catcaccgtc ggggtgtacg
      421 aggcggccaa gctgctcaac gtcgaccccg ataacgtggt gctgtgcctg ctggcggcgg
      481 acgaggacga cgatagggac gtggctctgc agatccactt caccctgatc caggcgttct
      541 gctgcgagaa cgacatagac atcctgcgcg tcagcaaccc tggccggctg gccgagctcc
      601 tgctcctgga gagtgacgcg ggccccgcgt tgagcgaggg cgcggagcag cccccggact
      661 tgcactgcgt gctggtgacg aatccacatt catcacagtg gaaggatcct gccttaagtc
      721 aacttatttg tttttgccgg gaaagtcgct acatggatca gtgggttcca gtgattaatc
      781 tccctgaacg gtgatggcat ctgaatgaaa ataactgaac caaattgcac tgaagttttg
      841 aaataccttt gtagttactc aagcagttac tccctacact gatgcaagga ttacagaaac
      901 tgatgtcaag gggctgagtg agttcaacta catgttctgg gagcccggag atagatgact
      961 ttgcagatgg aaagaggtga aaatgaagaa ggaagctgtg tggaaacaga aatacaagtc
     1021 aaaaggaaca aaaattacaa agaaccacgc aggaaggaaa acaaaactat gtattaattt
     1081 aggatggttg agttacattt aaataaacca aatatgcttt gttaaagttt aaatgtgcgg
     1141 cagtagtttg ggtaattttg gtttatatgc cctcaagtaa aaaagaaaaa agcagaaagg
     1201 gttaatcata ttttaaaacc atattttatt gtattttgat gagatgttaa attctcaaag
     1261 ttttattata aattgtacta agttatttta tgacatgaaa ggttatttat gctataaatt
     1321 ttttgaaaca caatacttaa caataaactg gtatggaata attgca
//
LOCUS       XM_032607096            2056 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cellular communication network factor 1
            (CCN1), transcript variant X1, mRNA.
ACCESSION   XM_032607096
VERSION     XM_032607096.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2056
                     /gene="CCN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 27 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740958"
     CDS             258..1406
                     /gene="CCN1"
                     /codon_start=1
                     /product="CCN family member 1 isoform X1"
                     /protein_id="XP_032462987.1"
                     /db_xref="GeneID:116740958"
                     /translation="MSSSTARTLALAVTLLHLARLALSTCPAACHCPLEAPKCAPGVG
                     LVRDACGCCKVCAKQLNEDCSKTQPCDHTKGLECNFGASSTALKGICRAQSEGRPCEY
                     NSRIYQNGESFQPNCKHQCTCIDGAVGCIPLCPQELSLPSLGCPNPRLVKVTGQCCEE
                     WVCDEDGAKDPMDDRDGLLGKELAFDASEVELTRNNELIAIGKGGSLKRLPVFGMEPR
                     ILYSPSSHGQKCIVQTTSWSQCSKTCGTGISTRVTNDNPECRLLKETRICEVRPCGQP
                     VYSSLKKGKKCSKTKKSPEPVKFTYAGCSSMKKYRPKYCGSCVDGRCCTPQQTRTVKM
                     RFRCEDGETFSKNVMMIQSCRCNYNCPHANEAAFPFYRLFNDIHKFRD"
     misc_feature    333..491
                     /gene="CCN1"
                     /note="Insulin-like growth factor binding protein; Region:
                     IGFBP; pfam00219"
                     /db_xref="CDD:459717"
     misc_feature    555..734
                     /gene="CCN1"
                     /note="von Willebrand factor (vWF) type C domain; Region:
                     VWC; smart00214"
                     /db_xref="CDD:214564"
     misc_feature    945..1076
                     /gene="CCN1"
                     /note="CCN3 Nov like TSP1 domain; Region: TSP1_CCN;
                     pfam19035"
                     /db_xref="CDD:465952"
     misc_feature    1137..1385
                     /gene="CCN1"
                     /note="Glycoprotein hormone beta chain homologues; Region:
                     GHB_like; cl21545"
                     /db_xref="CDD:473907"
ORIGIN      
        1 gctctgggcg ctggggcaga ccgcgagcga gagcaccccc gagcagcatc cgcgccttcc
       61 gtccctcccc ggcaaggacc tcgagagaag gacgcccgca gcccgctcgc ctgcctggct
      121 ctcgcctctc cgccgcccgg cccacagccc ggcccaccgc ccggcccacc gcctcagccg
      181 cgccggtccg gccgctacgc accggtgtgt tggcgtcttt gcctccgcgc tcgtccggac
      241 ccctcctgcg cgccacgatg agctccagca ccgccaggac gctcgccctc gccgtcaccc
      301 ttctccactt ggccaggctg gctctctcca cctgccccgc agcctgccac tgccccctgg
      361 aggcgcccaa gtgcgccccg ggagtcgggc tggttcggga cgcctgcggc tgctgtaagg
      421 tctgcgccaa gcagctcaac gaggactgca gcaaaacaca gccctgcgac cacaccaagg
      481 ggctggaatg caacttcggc gccagctcca ccgctctgaa ggggatctgc agagctcagt
      541 cagagggcag accctgtgaa tataactcca gaatctacca gaatggggaa agtttccagc
      601 ccaactgtaa acatcagtgc acatgtattg acggcgccgt gggctgcatt cctctgtgtc
      661 cccaagaact ctctctccca agcttgggct gtcccaaccc ccggctggtc aaagttaccg
      721 ggcagtgctg tgaggagtgg gtctgtgacg aggatggtgc caaggacccc atggacgaca
      781 gggacggcct cctgggcaag gagctggcct tcgatgcctc ggaggtggag ttaacgagaa
      841 acaatgaatt aattgcaatt ggaaaaggcg gctccctgaa gcggctcccc gtttttggaa
      901 tggaacctcg cattctgtac agcccttctt cacatggcca gaaatgtatc gtccaaacga
      961 cttcgtggtc ccaatgctca aaaacctgtg gaactggtat ctccacacgc gttaccaatg
     1021 acaaccctga atgccgcctg ctgaaggaaa cccggatctg tgaagtgcgg ccttgtggac
     1081 agccagtgta cagcagcctg aaaaagggca agaaatgcag caagaccaag aaatcccctg
     1141 aaccggtcaa gtttacttac gctggatgtt cgagtatgaa gaaataccgg cccaagtact
     1201 gcggttcctg cgtggacggc cgctgctgca cgcctcagca gaccaggact gtgaagatgc
     1261 ggttccgctg cgaagatggg gagacgtttt ccaagaacgt catgatgatc cagtcctgca
     1321 gatgcaacta caactgcccg catgccaacg aggcagcctt tcccttctac agactgttca
     1381 atgacattca caaatttagg gactaaatgc tacctgcgtt ttccagcacg agggcggaca
     1441 aagtggggag agaagagtgt cagcatcctg gaggcgtggg tgggggcggc gggctgaagg
     1501 gactcattgt agaagggatg cactgctcat tcttgagtag tattaaggta tttcgaaact
     1561 gccaggtgtg ctggtgcacg tggacactaa tgcagccgca attggagaat actttgcttc
     1621 ataatattgg agcacacgtt actgcttcat tttggagctt gtggtgttga tgacgttctg
     1681 ttttctgttt gtaaattatt tggtaagcgt atttttctct aggctttttc catttcggtt
     1741 ttacagttgt aaaaggtaat aagattagtt ggacatttaa gactccatcc tttgacagaa
     1801 gtaaatggga gcgggggtcc atcccttcca gaaggtgaca ctctgtgagt gtccatgaga
     1861 ggcagctatc tgccctctaa attgcaaaca gaaatcaggt gttttaagac tgaatgtttt
     1921 tatttatcaa aatgtagctt tcggggaggg aggggaaatg taatactgga ataatttgta
     1981 aatgatttta attttatatt cagtgaaaag aatttattta tggaattaat catttaataa
     2041 agaaatattt acctaa
//
LOCUS       XM_032607104            1334 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cellular communication network factor 1
            (CCN1), transcript variant X2, mRNA.
ACCESSION   XM_032607104
VERSION     XM_032607104.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1334
                     /gene="CCN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 long SRA reads, 9
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116740958"
     CDS             259..1293
                     /gene="CCN1"
                     /codon_start=1
                     /product="CCN family member 1 isoform X2"
                     /protein_id="XP_032462995.1"
                     /db_xref="GeneID:116740958"
                     /translation="MSSSTARTLALAVTLLHLARLLNEDCSKTQPCDHTKGLECNFGA
                     SSTALKGICRAQSEGRPCEYNSRIYQNGESFQPNCKHQCTCIDGAVGCIPLCPQELSL
                     PSLGCPNPRLVKVTGQCCEEWVCDEDGAKDPMDDRDGLLGKELAFDASEVELTRNNEL
                     IAIGKGGSLKRLPVFGMEPRILYSPSSHGQKCIVQTTSWSQCSKTCGTGISTRVTNDN
                     PECRLLKETRICEVRPCGQPVYSSLKKGKKCSKTKKSPEPVKFTYAGCSSMKKYRPKY
                     CGSCVDGRCCTPQQTRTVKMRFRCEDGETFSKNVMMIQSCRCNYNCPHANEAAFPFYR
                     LFNDIHKFRD"
     misc_feature    442..621
                     /gene="CCN1"
                     /note="von Willebrand factor (vWF) type C domain; Region:
                     VWC; smart00214"
                     /db_xref="CDD:214564"
     misc_feature    832..963
                     /gene="CCN1"
                     /note="CCN3 Nov like TSP1 domain; Region: TSP1_CCN;
                     pfam19035"
                     /db_xref="CDD:465952"
     misc_feature    1024..1272
                     /gene="CCN1"
                     /note="Glycoprotein hormone beta chain homologues; Region:
                     GHB_like; cl21545"
                     /db_xref="CDD:473907"
ORIGIN      
        1 ggctctgggc gctggggcag accgcgagcg agagcacccc cgagcagcat ccgcgccttc
       61 cgtccctccc cggcaaggac ctcgagagaa ggacgcccgc agcccgctcg cctgcctggc
      121 tctcgcctct ccgccgcccg gcccacagcc cggcccaccg cccggcccac cgcctcagcc
      181 gcgccggtcc ggccgctacg caccggtgtg ttggcgtctt tgcctccgcg ctcgtccgga
      241 cccctcctgc gcgccacgat gagctccagc accgccagga cgctcgccct cgccgtcacc
      301 cttctccact tggccaggct gctcaacgag gactgcagca aaacacagcc ctgcgaccac
      361 accaaggggc tggaatgcaa cttcggcgcc agctccaccg ctctgaaggg gatctgcaga
      421 gctcagtcag agggcagacc ctgtgaatat aactccagaa tctaccagaa tggggaaagt
      481 ttccagccca actgtaaaca tcagtgcaca tgtattgacg gcgccgtggg ctgcattcct
      541 ctgtgtcccc aagaactctc tctcccaagc ttgggctgtc ccaacccccg gctggtcaaa
      601 gttaccgggc agtgctgtga ggagtgggtc tgtgacgagg atggtgccaa ggaccccatg
      661 gacgacaggg acggcctcct gggcaaggag ctggccttcg atgcctcgga ggtggagtta
      721 acgagaaaca atgaattaat tgcaattgga aaaggcggct ccctgaagcg gctccccgtt
      781 tttggaatgg aacctcgcat tctgtacagc ccttcttcac atggccagaa atgtatcgtc
      841 caaacgactt cgtggtccca atgctcaaaa acctgtggaa ctggtatctc cacacgcgtt
      901 accaatgaca accctgaatg ccgcctgctg aaggaaaccc ggatctgtga agtgcggcct
      961 tgtggacagc cagtgtacag cagcctgaaa aagggcaaga aatgcagcaa gaccaagaaa
     1021 tcccctgaac cggtcaagtt tacttacgct ggatgttcga gtatgaagaa ataccggccc
     1081 aagtactgcg gttcctgcgt ggacggccgc tgctgcacgc ctcagcagac caggactgtg
     1141 aagatgcggt tccgctgcga agatggggag acgttttcca agaacgtcat gatgatccag
     1201 tcctgcagat gcaactacaa ctgcccgcat gccaacgagg cagcctttcc cttctacaga
     1261 ctgttcaatg acattcacaa atttagggac taaatgctac ctgcgttttc cagcacgagg
     1321 gcggacaaag tggg
//
LOCUS       XM_032607119            2913 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major histocompatibility complex class
            I-related gene protein (LOC116740968), mRNA.
ACCESSION   XM_032607119
VERSION     XM_032607119.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2913
                     /gene="LOC116740968"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740968"
     CDS             131..556
                     /gene="LOC116740968"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:512..514,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: major histocompatibility
                     complex class I-related gene protein"
                     /protein_id="XP_032463010.1"
                     /db_xref="GeneID:116740968"
                     /translation="MLDFHTYQRMIGCELLEDGNTTGFPQHAYDGQDFIIFSKDTLSW
                     MTMDNVAHITKQAWEASQHELQYQKNWLEEECIAWLKRFLEYGKGTLQRTESETTLLA
                     MKAVGFIVPATVLSGVGVVAWQRKPXEQNGVVYLPTPDH"
     misc_feature    <143..403
                     /gene="LOC116740968"
                     /note="Class I Histocompatibility antigen, domains alpha 1
                     and 2; Region: MHC_I; cl08246"
                     /db_xref="CDD:471794"
ORIGIN      
        1 tataggttct tgaaagatca gcagggacct gtcagtgttt tggttaaaag aatcggaaag
       61 agaaggattt tagaggggct gatggtgctc ctgttacctc tcatcgttgc attagcagtg
      121 atgcacagtg atgctcgatt tccacactta ccagagaatg attggctgtg agttactgga
      181 ggatggaaac accacggggt ttccccaaca tgcatatgac ggacaggatt tcattatctt
      241 cagtaaagat accctctcct ggatgactat ggataatgtg gctcacatca ccaagcaggc
      301 atgggaggcc agtcagcatg agctacaata tcaaaagaat tggctggaag aggaatgtat
      361 tgcctggtta aagagatttc tggagtatgg gaaaggtacc ctacaaagga cagaatcaga
      421 aactacgctt ctggcgatga aagctgttgg gttcattgtc cccgccactg tcctgtctgg
      481 agttggtgtc gtagcctggc aaaggaagcc ctgagagcaa aatggagttg tctaccttcc
      541 tacaccagat cactgacggg agatggctat tttccagctg tctttcctct aggaaccatg
      601 gtctcctctg tcccatatgg actccaagtc cagcactcaa agctcttgac cacacccaca
      661 acagacatgg acattatagg attaattatt tgtggcagac agataggagc tacaaaatgt
      721 tatttgttct ttggctccaa aaagactatc agctatcagg ctctttggat ggactccttc
      781 attacatttc ccctaaatgt ggctgttctc atggcacaac acttctttac atcccatttg
      841 tcaacaatgg tttgcgggta ggttagcgaa tctcagggct gggagaaaac ttcaatccag
      901 ggccggcaat gtcttctcca atgcctttgc cttgagcatc tagcctccgc ttgaattcca
      961 ccagtgaacg tcacctcact acgtcacaaa aggcctttct cttctttcat gagagtgttg
     1021 actaggcaaa agcggtgggt gccacgactg tgaccctaca gacaggttgg accaccccgt
     1081 gagagcagtc agccagtctc tacaatggcc tgtgcactgg tgggatcatt ttacaccttc
     1141 cctggcctga gagaaagcaa aagtgccctg ttcttttgcc aggcagctct gcctggtagc
     1201 ttggcatctt ggaaatatac ctggtcagat ttgtggaggt gatttcattc tgtcttttgt
     1261 aagaaagtaa gaaaaataag tatcggacat tatcaccttt agtagaaata gagagacttg
     1321 aacccaattg ctatctttta atgtaaaaat gatggtgtgt ctcagaagag catccagttc
     1381 taatttctgt ccttcctcta ctggcttatt gtagatgggc ctgactcatc tttatacatg
     1441 tgctttttct ccgtacatct gccctgggaa taaataaaag ccccactgtg agaattaaca
     1501 tccccttgat cctccttact cttcccaacc gcctaaaatc ctcaccatca tttacctctt
     1561 gtcctgccct ctgtagccac cggtccttgg gttgaccatc agttatacat tcatctgtcc
     1621 cacttcactg actctgtctg accgcacacg tcggctctga tactcgcttc agtggcccca
     1681 actttgacaa ctgactttga acatgtatgt cagacttgac ctttgctttc ccttgaccaa
     1741 tgcatttgcc ctctggcttt aatcatcaca gccacaggta cagaccctct cagcgtgcta
     1801 gggctattcc ttgctccact gtccccacct ccttccatgg ttgaagctcc caccccgtgt
     1861 ctctttgctg gtgcccgctg agttgcataa gagaacaact gtgtttgttt attttgcttt
     1921 tagggttgcc atgggcaatt gccataccat cttttaagca gtgttgcact gtgaagagag
     1981 cagctttatt tctggaatgg tttcttctta caattagaat agttaggact taaaatattt
     2041 ttggatggac ccttacagtg gttcagatgc tgtatctata taaatgtctt ctccaactgc
     2101 ctggtactct catcaaacac atgaatggtc aaagcctttt tgtgctccca gggccttgcc
     2161 ctacacttgt ccacatggat gaagaggagg aggcagaggc aagggcaagg atgtggtgat
     2221 gagaccttct gtagtgcaat tgcagcgtct ctgtttctcc cttggggatt ttataatata
     2281 aagagagtta tcatataaat ataatataaa gggatgattt ttcaataata tgaacaattt
     2341 tgcaccttca ttttacaagt acctcaagat tacattattt cttaatagtt ttagacttat
     2401 tgcttcatta acttgtgttt gttgattaca gatgcttggt aattggaaac tatgaaatat
     2461 ttgataatgt aatctaaaca ttaaaaacaa aggactgtgc tatcaccaca atcatgtttt
     2521 gactttggat tgtctttact taatatttgg atgaagaaca ctggatgaga aatctgttca
     2581 actctcttct tcatcatata tttttttaac tctattgtct attttctttt taagcacaca
     2641 cagaccaaac tatagtctat ttaaatggca gtgtaacagg gagggaagaa aagcagtttg
     2701 aagagcaggg tgaaagtcag gcaaagtttt cctggaccag gctcctctgt tgtaggggtg
     2761 agctgtccca tcggagggct ggccttctct gcctcttcca ctattttcaa gttcttctgg
     2821 gccgttcctt atttctgagg acccatgtac ttggtttttc ctcttctact tttttttttt
     2881 ttaaataaat ttatttattt atttttggct gcg
//
LOCUS       XM_032607133            2730 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DAB adaptor protein 1 (DAB1), transcript
            variant X1, mRNA.
ACCESSION   XM_032607133
VERSION     XM_032607133.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2730
                     /gene="DAB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740974"
     CDS             259..1908
                     /gene="DAB1"
                     /codon_start=1
                     /product="disabled homolog 1 isoform X1"
                     /protein_id="XP_032463024.1"
                     /db_xref="GeneID:116740974"
                     /translation="MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKA
                     KLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTG
                     ALQQHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQL
                     IYELKQREELEKKAQKDKQCEQAVYQVPTSQKKEGVYDVPKSQPVSNSCTFEDFEERF
                     AVATPNRKLPMDFDEIFEATKAVTQLELFGDMSTPPDITSPPTPATPGDAFIPSSSQT
                     LPASADMFGSVPFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVMPGA
                     QPIAWGQPGLFPATQQPWPTVAGQFAPAAFMPTQTVMPLPAAMFQGPLTPLATVPATG
                     DSARSSPQTDKPRQKMGKEMFKDFQMAQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGV
                     AQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPTTDDIFE
                     EGFESPSKSEEQEAPDGPQASSNSDPFGEPSGDNISPQAGS"
     misc_feature    331..780
                     /gene="DAB1"
                     /note="Disabled (Dab) Phosphotyrosine-binding domain;
                     Region: PTB_Dab; cd01215"
                     /db_xref="CDD:269926"
     misc_feature    order(391..393,493..495,499..504,628..630,682..684)
                     /gene="DAB1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269926"
     misc_feature    order(424..426,586..600,649..651,709..711,718..723,
                     730..732)
                     /gene="DAB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:269926"
     misc_feature    <1000..1905
                     /gene="DAB1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tcggctctcg cccgggcttc cccgggctgg agagcgcgcc taagtgccgc cgcccgccgg
       61 gcatggggaa ccgcttcctg ggcggctgcg gcagcggagg aggaagctct cggcgagcct
      121 agcgctcgaa aggagtgaat gaaatgtgca gctcggggtg tcatttctga agggaggagt
      181 cgttttcttg gagaggagtc ctcaatgagc ctggccgagg cccgggatct gtgtgaagtg
      241 gactaaggat ttagtaggat gtcaactgag acagaacttc aagtagctgt gaaaaccagc
      301 gccaagaaag attccagaaa gaaaggtcag gatcgcagtg aagccacttt gataaagagg
      361 tttaaaggtg aaggggtccg gtacaaggcc aaactgatcg ggattgatga ggtttccgca
      421 gctcggggag acaagttatg ccaagactcc atgatgaaac tcaagggcgt tgttgctggc
      481 gctcgttcca aaggagaaca caaacagaaa atctttttaa ccatctcctt tggaggaatc
      541 aaaatctttg atgagaagac aggggccctt cagcagcatc acgctgttca cgaaatttcc
      601 tacatcgcca aggacatcac agaccaccgg gccttcggat acgtttgtgg gaaggaaggg
      661 aatcacagat tcgtggccat caaaacagcc caggcggctg aacccgttat tctggacttg
      721 agagatctct ttcaacttat ttatgaattg aagcaaagag aagaattgga aaaaaaggca
      781 caaaaggata agcaatgcga acaagctgtg tatcaggttc ccaccagcca aaagaaagaa
      841 ggtgtttatg atgtgccaaa aagtcaacct gtaagtaaca gctgtacgtt tgaagatttt
      901 gaagaacggt ttgcagtggc gacccctaac agaaaactgc cgatggactt tgatgagatt
      961 tttgaggcaa caaaggctgt gacccagtta gaactttttg gggacatgtc cacccctcct
     1021 gatataacct ctccccccac tcctgcaact ccaggtgatg cctttatccc gtcttcatct
     1081 cagacacttc cggcgagtgc agacatgttt ggttctgtac ctttcggcac tgctgctgta
     1141 ccctcaggtt atgttgcaat gggcgccgtc ctcccatcct tctggggcca gcagcccctt
     1201 gtccaacagc agatcgccat gggtgctcag ccaccagtcg ctcaggtgat gccaggggct
     1261 cagcccatcg catggggcca gccgggtctc ttccctgcca ctcagcagcc ctggcccacc
     1321 gtggccgggc agtttgcgcc agccgccttc atgcccacac aaactgttat gcctttgcca
     1381 gctgccatgt tccaaggtcc cctcaccccc cttgcaaccg tcccagccac gggtgactcc
     1441 gccaggtcaa gtccgcagac cgacaagccc aggcagaaaa tggggaaaga aatgtttaag
     1501 gatttccaga tggcccagcc tccacccgtg ccctcccgca aacctgacca gccctccctc
     1561 acctgcacct cagaggcctt ctccagttac ttcaacaaag tcggggtggc acaggataca
     1621 gacgattgtg atgactttga catctcccag ttgaatttga ctcctgtgac ttctactaca
     1681 ccatcgacca actcacctcc aaccccagcc cctagacaga gctctccatc caaatcatct
     1741 gcatcccacg ccagtgatcc gaccaccgat gacatctttg aagagggctt tgaaagtccc
     1801 agcaaaagtg aagagcaaga agctcctgat gggccacagg cctcatccaa cagtgatccc
     1861 tttggtgagc ccagtggtga taatataagt ccacaggccg gtagctagat agcgcaggtc
     1921 tgggtacacc gtatggagct catttcatag aagaaagtga cagcccagtg gacttgtcat
     1981 cattcactga atgtgcttga aaatgtaact ggctctgaac ttaaagaaga tggcccctgt
     2041 gatgcattaa agtgagcgga ataaagtcaa gattttaaac tgccatccat gttatcattg
     2101 gcagaattct gctgtttaat aagcactgtt tggggaactc agaaccaccg tatcctatcc
     2161 caggaataca gtgaaatttc caaataagag ctgaggtgcc aataccaaaa ggccatgggg
     2221 gagtctgcac agttccggtc agattggtag aaaatccaca tgtacaactg ttaattcctc
     2281 attcttcact agcacgaaat ttgtcacttt aaattttgaa accagggaaa caccacctgt
     2341 cattctgtcc ccattcccca tagctctccg atctttacat gccacaagac ttttttgata
     2401 attcgtactc atcccagtgt ctactgaaac cccatcatgt aatgtaccgg gcaccttctt
     2461 aaaaaaaaaa aaaatgttta ctctgtgggt ttggttcatt tcaatttctg cgttctgaca
     2521 catatttttt taataaagat gagaaagaga aaatgactgt tgcagtacat ttctagacct
     2581 actttaactt tacctcagat gacagtttgt taacatatat ggacacatta tttttaactt
     2641 tatgtacaat gcattcaaca gaacagcaaa atttttagaa attttccatt aatttctgta
     2701 acactccatg taaaactgtt acaaataaac
//
LOCUS       XM_032607142            5317 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DAB adaptor protein 1 (DAB1), transcript
            variant X2, mRNA.
ACCESSION   XM_032607142
VERSION     XM_032607142.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5317
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5317
                     /gene="DAB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740974"
     CDS             259..1902
                     /gene="DAB1"
                     /codon_start=1
                     /product="disabled homolog 1 isoform X2"
                     /protein_id="XP_032463033.1"
                     /db_xref="GeneID:116740974"
                     /translation="MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKA
                     KLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTG
                     ALQQHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQL
                     IYELKQREELEKKAQKDKQCEQAVYQVPTSQKKEGVYDVPKSQPNSCTFEDFEERFAV
                     ATPNRKLPMDFDEIFEATKAVTQLELFGDMSTPPDITSPPTPATPGDAFIPSSSQTLP
                     ASADMFGSVPFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVMPGAQP
                     IAWGQPGLFPATQQPWPTVAGQFAPAAFMPTQTVMPLPAAMFQGPLTPLATVPATGDS
                     ARSSPQTDKPRQKMGKEMFKDFQMAQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGVAQ
                     DTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPTTDDIFEEG
                     FESPSKSEEQEAPDGPQASSNSDPFGEPSGDNISPQAGS"
     misc_feature    331..780
                     /gene="DAB1"
                     /note="Disabled (Dab) Phosphotyrosine-binding domain;
                     Region: PTB_Dab; cd01215"
                     /db_xref="CDD:269926"
     misc_feature    order(391..393,493..495,499..504,628..630,682..684)
                     /gene="DAB1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269926"
     misc_feature    order(424..426,586..600,649..651,709..711,718..723,
                     730..732)
                     /gene="DAB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:269926"
     misc_feature    <994..1899
                     /gene="DAB1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tcggctctcg cccgggcttc cccgggctgg agagcgcgcc taagtgccgc cgcccgccgg
       61 gcatggggaa ccgcttcctg ggcggctgcg gcagcggagg aggaagctct cggcgagcct
      121 agcgctcgaa aggagtgaat gaaatgtgca gctcggggtg tcatttctga agggaggagt
      181 cgttttcttg gagaggagtc ctcaatgagc ctggccgagg cccgggatct gtgtgaagtg
      241 gactaaggat ttagtaggat gtcaactgag acagaacttc aagtagctgt gaaaaccagc
      301 gccaagaaag attccagaaa gaaaggtcag gatcgcagtg aagccacttt gataaagagg
      361 tttaaaggtg aaggggtccg gtacaaggcc aaactgatcg ggattgatga ggtttccgca
      421 gctcggggag acaagttatg ccaagactcc atgatgaaac tcaagggcgt tgttgctggc
      481 gctcgttcca aaggagaaca caaacagaaa atctttttaa ccatctcctt tggaggaatc
      541 aaaatctttg atgagaagac aggggccctt cagcagcatc acgctgttca cgaaatttcc
      601 tacatcgcca aggacatcac agaccaccgg gccttcggat acgtttgtgg gaaggaaggg
      661 aatcacagat tcgtggccat caaaacagcc caggcggctg aacccgttat tctggacttg
      721 agagatctct ttcaacttat ttatgaattg aagcaaagag aagaattgga aaaaaaggca
      781 caaaaggata agcaatgcga acaagctgtg tatcaggttc ccaccagcca aaagaaagaa
      841 ggtgtttatg atgtgccaaa aagtcaacct aacagctgta cgtttgaaga ttttgaagaa
      901 cggtttgcag tggcgacccc taacagaaaa ctgccgatgg actttgatga gatttttgag
      961 gcaacaaagg ctgtgaccca gttagaactt tttggggaca tgtccacccc tcctgatata
     1021 acctctcccc ccactcctgc aactccaggt gatgccttta tcccgtcttc atctcagaca
     1081 cttccggcga gtgcagacat gtttggttct gtacctttcg gcactgctgc tgtaccctca
     1141 ggttatgttg caatgggcgc cgtcctccca tccttctggg gccagcagcc ccttgtccaa
     1201 cagcagatcg ccatgggtgc tcagccacca gtcgctcagg tgatgccagg ggctcagccc
     1261 atcgcatggg gccagccggg tctcttccct gccactcagc agccctggcc caccgtggcc
     1321 gggcagtttg cgccagccgc cttcatgccc acacaaactg ttatgccttt gccagctgcc
     1381 atgttccaag gtcccctcac cccccttgca accgtcccag ccacgggtga ctccgccagg
     1441 tcaagtccgc agaccgacaa gcccaggcag aaaatgggga aagaaatgtt taaggatttc
     1501 cagatggccc agcctccacc cgtgccctcc cgcaaacctg accagccctc cctcacctgc
     1561 acctcagagg ccttctccag ttacttcaac aaagtcgggg tggcacagga tacagacgat
     1621 tgtgatgact ttgacatctc ccagttgaat ttgactcctg tgacttctac tacaccatcg
     1681 accaactcac ctccaacccc agcccctaga cagagctctc catccaaatc atctgcatcc
     1741 cacgccagtg atccgaccac cgatgacatc tttgaagagg gctttgaaag tcccagcaaa
     1801 agtgaagagc aagaagctcc tgatgggcca caggcctcat ccaacagtga tccctttggt
     1861 gagcccagtg gtgataatat aagtccacag gccggtagct agatagcgca ggtctgggag
     1921 ctggagcctc tttatgcgca gatcaacaag tctaagaaat agcatcaatg cgggcttgtg
     1981 gcgggcgctt caagactggc atggaaatca gcatcgcgac aggctctctt gtattctttc
     2041 acctcacctc atcccacgaa gaaattcacg attgcccaat ggaactcatt tggaagaggg
     2101 aactgagagt tttgggcaac cactggcaga tatctatggc agcacaaaaa caaacacaca
     2161 aaagcataaa aaatcatacc caacgttaaa tcacaaatca agcaaatgct tacttgacag
     2221 agagtctaag ctctcttaac acgtgggtat aagatgaccc agtatgcgaa accatagttc
     2281 tctttttatt tctctaccgg ttggccactg taaagacatc aaatttggag tgacgggcct
     2341 cagagagtta catcagggtt ggcactgacg tcatttaggc aaaagtaaga ggtctctgtc
     2401 accacaatat catcatccat atgcctttcc aaataggatg atgtatttac atcactccac
     2461 aaggcctggt ctgccatttt tttccccttt cctttctttg tcatgtttga aaattaatgg
     2521 gtgtacaaat ttttgtattg ctttcgactt tttttagata ttggtgaaga aatcgaactg
     2581 ggcaaaaaaa aaaaaaacct catatgaaat gaattcactt gaaatcacaa gacagatgag
     2641 tggttgatga ttctttttga tcaagaatgt tgccaaaaca accctttagc tcttctgcat
     2701 cctggtgaag aaagacagct ttcggtttaa ccttcactct gtgagtagga aaggacatcg
     2761 aatcccattg atgagaaaga tgaaaaaatg catctgattt cctcagaagc tctaaactct
     2821 aagtccaata aaatgagatt ttttattttt ccgatatctt gctgctgtga tgctatgcag
     2881 acagtgtctt ctccacgtgc cattttcaaa gaaaagtcat ttgccaaata attatggtac
     2941 aatcctggta atgtggtttg agatcttaaa aaatgacttt ctaatggaac agtagtgaca
     3001 tgaatattca gagtaacaaa ctgattctgt ggtcacaatg gttcatctct atctcttttt
     3061 tctacatcag aaaattcaaa tgggattttt attttataac ttgaaacaaa aaaaagctta
     3121 ccattaaact ctttaaatat ttaagggaaa tggctttaag gagttctaat gaaaaaaaat
     3181 tgccagtttt tttttgtaaa tatagatgtt aatgaaaatg ctttttaata atgccattac
     3241 actgtagaga aggtagcaga ttgagtgaaa gatgtgacaa acttgatgga tggggctcac
     3301 tttccagatg ttactctgga gcgtatggta ggaagctgga gttcgggggc agcaggcagg
     3361 agcagtcgtc caatcagcag ctagggatca ggaaaggagc gcgtgactcc atcggctaat
     3421 aatctaagcc tttccgcgag cgtaccggcc ctctgcctaa aacaagaaag agacagttca
     3481 cgctctgaag gcctgtgaac tgaaactcca gtttcagatt ctgaaactcc ctcccactcc
     3541 tccactccca gcgacccccg tagacatcat tggactgttt gtacgtgaaa cagaagagtt
     3601 taagcttcct ttttttacat ttatgagaca aaaagtgcag tgttcagttc gtatgtttag
     3661 cacatgattt tcataaagaa tctatatatt ttttgcccta cagagaattg ttctacaggt
     3721 caaatgtgtt ttcctgatgt tcctatgcag ttacagtatg ttgaatttag tggtttaaca
     3781 ctaagaagaa aactttaaaa aaaatcatgt gatgaattgg attgggggtg ggggtgatta
     3841 ttcttacttg gttttaaaat ttgaaaagta ggatttacct tgatatgaat gacgtcaatt
     3901 ggcctgtgtg ctttgattct tcatatcaat agaaactaaa atggtttgga agaaggtata
     3961 cttggtgacc aagaaaaaaa gtgataagtc aaggtgattg ttaactgttt gaagcccaag
     4021 ttttacacta tccggtcact ggaatctgaa tgttttccag ttaactggaa aaatgtccat
     4081 tacagaatag atgtaagtaa gcgtcaccct aatgtgcaaa gtctaaagaa cccgaaacgt
     4141 gaaaagggcc atttaccttc ctctgtagct gtcacatgtt ggtcgacatg atttcttcag
     4201 gaatgtgcat tcctttgatg agttgatcct tccacatgaa ggggaaaatg ggaaaggtgt
     4261 gataaccatg agagctgtcc tgagaccagt tcagctgtgt tttctgagga tttgatgaga
     4321 taggcagttc ccatggggaa atgacttaaa tcgctctgtt gtccatgatt ctgattctaa
     4381 accagtggtg ctatcttctc cctcaatatg gctgtcttga gtttgtcttg cagtatcaca
     4441 cccttccact gattccgtgg gttgcttctg acacattcaa agtgaactct ggctgatgtt
     4501 gctatttcag gtacaccgta tggagctcat ttcatagaag aaagtgacag cccagtggac
     4561 ttgtcatcat tcactgaatg tgcttgaaaa tgtaactggc tctgaactta aagaagatgg
     4621 cccctgtgat gcattaaagt gagcggaata aagtcaagat tttaaactgc catccatgtt
     4681 atcattggca gaattctgct gtttaataag cactgtttgg ggaactcaga accaccgtat
     4741 cctatcccag gaatacagtg aaatttccaa ataagagctg aggtgccaat accaaaaggc
     4801 catgggggag tctgcacagt tccggtcaga ttggtagaaa atccacatgt acaactgtta
     4861 attcctcatt cttcactagc acgaaatttg tcactttaaa ttttgaaacc agggaaacac
     4921 cacctgtcat tctgtcccca ttccccatag ctctccgatc tttacatgcc acaagacttt
     4981 tttgataatt cgtactcatc ccagtgtcta ctgaaacccc atcatgtaat gtaccgggca
     5041 ccttcttaaa aaaaaaaaaa atgtttactc tgtgggtttg gttcatttca atttctgcgt
     5101 tctgacacat atttttttaa taaagatgag aaagagaaaa tgactgttgc agtacatttc
     5161 tagacctact ttaactttac ctcagatgac agtttgttaa catatatgga cacattattt
     5221 ttaactttat gtacaatgca ttcaacagaa cagcaaaatt tttagaaatt ttccattaat
     5281 ttctgtaaca ctccatgtaa aactgttaca aataaac
//
LOCUS       XM_032607152            5224 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DAB adaptor protein 1 (DAB1), transcript
            variant X3, mRNA.
ACCESSION   XM_032607152
VERSION     XM_032607152.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5224
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5224
                     /gene="DAB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116740974"
     CDS             259..1869
                     /gene="DAB1"
                     /codon_start=1
                     /product="disabled homolog 1 isoform X3"
                     /protein_id="XP_032463043.1"
                     /db_xref="GeneID:116740974"
                     /translation="MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKA
                     KLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTG
                     ALQQHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQL
                     IYELKQREELEKKAQKDKQCEQAVYQVPTSQKKEGVYDVPKSQPVSNSCTFEDFEERF
                     AVATPNRKLPMDFDEIFEATKAVTQLELFGDMSTPPDITSPPTPATPGDAFIPSSSQT
                     LPASADMFGSVPFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVMPGA
                     QPIAWGQPGLFPATQQPWPTVAGQFAPAAFMPTQTVMPLPAAMFQGPLTPLATVPATG
                     DSARSSPQTDKPRQKMGKEMFKDFQMAQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGV
                     AQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPTTDDIFE
                     EGFESPSKSEEQEAELEPLYAQINKSKK"
     misc_feature    331..780
                     /gene="DAB1"
                     /note="Disabled (Dab) Phosphotyrosine-binding domain;
                     Region: PTB_Dab; cd01215"
                     /db_xref="CDD:269926"
     misc_feature    order(391..393,493..495,499..504,628..630,682..684)
                     /gene="DAB1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269926"
     misc_feature    order(424..426,586..600,649..651,709..711,718..723,
                     730..732)
                     /gene="DAB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:269926"
     misc_feature    <1000..1545
                     /gene="DAB1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tcggctctcg cccgggcttc cccgggctgg agagcgcgcc taagtgccgc cgcccgccgg
       61 gcatggggaa ccgcttcctg ggcggctgcg gcagcggagg aggaagctct cggcgagcct
      121 agcgctcgaa aggagtgaat gaaatgtgca gctcggggtg tcatttctga agggaggagt
      181 cgttttcttg gagaggagtc ctcaatgagc ctggccgagg cccgggatct gtgtgaagtg
      241 gactaaggat ttagtaggat gtcaactgag acagaacttc aagtagctgt gaaaaccagc
      301 gccaagaaag attccagaaa gaaaggtcag gatcgcagtg aagccacttt gataaagagg
      361 tttaaaggtg aaggggtccg gtacaaggcc aaactgatcg ggattgatga ggtttccgca
      421 gctcggggag acaagttatg ccaagactcc atgatgaaac tcaagggcgt tgttgctggc
      481 gctcgttcca aaggagaaca caaacagaaa atctttttaa ccatctcctt tggaggaatc
      541 aaaatctttg atgagaagac aggggccctt cagcagcatc acgctgttca cgaaatttcc
      601 tacatcgcca aggacatcac agaccaccgg gccttcggat acgtttgtgg gaaggaaggg
      661 aatcacagat tcgtggccat caaaacagcc caggcggctg aacccgttat tctggacttg
      721 agagatctct ttcaacttat ttatgaattg aagcaaagag aagaattgga aaaaaaggca
      781 caaaaggata agcaatgcga acaagctgtg tatcaggttc ccaccagcca aaagaaagaa
      841 ggtgtttatg atgtgccaaa aagtcaacct gtaagtaaca gctgtacgtt tgaagatttt
      901 gaagaacggt ttgcagtggc gacccctaac agaaaactgc cgatggactt tgatgagatt
      961 tttgaggcaa caaaggctgt gacccagtta gaactttttg gggacatgtc cacccctcct
     1021 gatataacct ctccccccac tcctgcaact ccaggtgatg cctttatccc gtcttcatct
     1081 cagacacttc cggcgagtgc agacatgttt ggttctgtac ctttcggcac tgctgctgta
     1141 ccctcaggtt atgttgcaat gggcgccgtc ctcccatcct tctggggcca gcagcccctt
     1201 gtccaacagc agatcgccat gggtgctcag ccaccagtcg ctcaggtgat gccaggggct
     1261 cagcccatcg catggggcca gccgggtctc ttccctgcca ctcagcagcc ctggcccacc
     1321 gtggccgggc agtttgcgcc agccgccttc atgcccacac aaactgttat gcctttgcca
     1381 gctgccatgt tccaaggtcc cctcaccccc cttgcaaccg tcccagccac gggtgactcc
     1441 gccaggtcaa gtccgcagac cgacaagccc aggcagaaaa tggggaaaga aatgtttaag
     1501 gatttccaga tggcccagcc tccacccgtg ccctcccgca aacctgacca gccctccctc
     1561 acctgcacct cagaggcctt ctccagttac ttcaacaaag tcggggtggc acaggataca
     1621 gacgattgtg atgactttga catctcccag ttgaatttga ctcctgtgac ttctactaca
     1681 ccatcgacca actcacctcc aaccccagcc cctagacaga gctctccatc caaatcatct
     1741 gcatcccacg ccagtgatcc gaccaccgat gacatctttg aagagggctt tgaaagtccc
     1801 agcaaaagtg aagagcaaga agctgagctg gagcctcttt atgcgcagat caacaagtct
     1861 aagaaatagc atcaatgcgg gcttgtggcg ggcgcttcaa gactggcatg gaaatcagca
     1921 tcgcgacagg ctctcttgta ttctttcacc tcacctcatc ccacgaagaa attcacgatt
     1981 gcccaatgga actcatttgg aagagggaac tgagagtttt gggcaaccac tggcagatat
     2041 ctatggcagc acaaaaacaa acacacaaaa gcataaaaaa tcatacccaa cgttaaatca
     2101 caaatcaagc aaatgcttac ttgacagaga gtctaagctc tcttaacacg tgggtataag
     2161 atgacccagt atgcgaaacc atagttctct ttttatttct ctaccggttg gccactgtaa
     2221 agacatcaaa tttggagtga cgggcctcag agagttacat cagggttggc actgacgtca
     2281 tttaggcaaa agtaagaggt ctctgtcacc acaatatcat catccatatg cctttccaaa
     2341 taggatgatg tatttacatc actccacaag gcctggtctg ccattttttt cccctttcct
     2401 ttctttgtca tgtttgaaaa ttaatgggtg tacaaatttt tgtattgctt tcgacttttt
     2461 ttagatattg gtgaagaaat cgaactgggc aaaaaaaaaa aaaacctcat atgaaatgaa
     2521 ttcacttgaa atcacaagac agatgagtgg ttgatgattc tttttgatca agaatgttgc
     2581 caaaacaacc ctttagctct tctgcatcct ggtgaagaaa gacagctttc ggtttaacct
     2641 tcactctgtg agtaggaaag gacatcgaat cccattgatg agaaagatga aaaaatgcat
     2701 ctgatttcct cagaagctct aaactctaag tccaataaaa tgagattttt tatttttccg
     2761 atatcttgct gctgtgatgc tatgcagaca gtgtcttctc cacgtgccat tttcaaagaa
     2821 aagtcatttg ccaaataatt atggtacaat cctggtaatg tggtttgaga tcttaaaaaa
     2881 tgactttcta atggaacagt agtgacatga atattcagag taacaaactg attctgtggt
     2941 cacaatggtt catctctatc tcttttttct acatcagaaa attcaaatgg gatttttatt
     3001 ttataacttg aaacaaaaaa aagcttacca ttaaactctt taaatattta agggaaatgg
     3061 ctttaaggag ttctaatgaa aaaaaattgc cagttttttt ttgtaaatat agatgttaat
     3121 gaaaatgctt tttaataatg ccattacact gtagagaagg tagcagattg agtgaaagat
     3181 gtgacaaact tgatggatgg ggctcacttt ccagatgtta ctctggagcg tatggtagga
     3241 agctggagtt cgggggcagc aggcaggagc agtcgtccaa tcagcagcta gggatcagga
     3301 aaggagcgcg tgactccatc ggctaataat ctaagccttt ccgcgagcgt accggccctc
     3361 tgcctaaaac aagaaagaga cagttcacgc tctgaaggcc tgtgaactga aactccagtt
     3421 tcagattctg aaactccctc ccactcctcc actcccagcg acccccgtag acatcattgg
     3481 actgtttgta cgtgaaacag aagagtttaa gcttcctttt tttacattta tgagacaaaa
     3541 agtgcagtgt tcagttcgta tgtttagcac atgattttca taaagaatct atatattttt
     3601 tgccctacag agaattgttc tacaggtcaa atgtgttttc ctgatgttcc tatgcagtta
     3661 cagtatgttg aatttagtgg tttaacacta agaagaaaac tttaaaaaaa atcatgtgat
     3721 gaattggatt gggggtgggg gtgattattc ttacttggtt ttaaaatttg aaaagtagga
     3781 tttaccttga tatgaatgac gtcaattggc ctgtgtgctt tgattcttca tatcaataga
     3841 aactaaaatg gtttggaaga aggtatactt ggtgaccaag aaaaaaagtg ataagtcaag
     3901 gtgattgtta actgtttgaa gcccaagttt tacactatcc ggtcactgga atctgaatgt
     3961 tttccagtta actggaaaaa tgtccattac agaatagatg taagtaagcg tcaccctaat
     4021 gtgcaaagtc taaagaaccc gaaacgtgaa aagggccatt taccttcctc tgtagctgtc
     4081 acatgttggt cgacatgatt tcttcaggaa tgtgcattcc tttgatgagt tgatccttcc
     4141 acatgaaggg gaaaatggga aaggtgtgat aaccatgaga gctgtcctga gaccagttca
     4201 gctgtgtttt ctgaggattt gatgagatag gcagttccca tggggaaatg acttaaatcg
     4261 ctctgttgtc catgattctg attctaaacc agtggtgcta tcttctccct caatatggct
     4321 gtcttgagtt tgtcttgcag tatcacaccc ttccactgat tccgtgggtt gcttctgaca
     4381 cattcaaagt gaactctggc tgatgttgct atttcaggta caccgtatgg agctcatttc
     4441 atagaagaaa gtgacagccc agtggacttg tcatcattca ctgaatgtgc ttgaaaatgt
     4501 aactggctct gaacttaaag aagatggccc ctgtgatgca ttaaagtgag cggaataaag
     4561 tcaagatttt aaactgccat ccatgttatc attggcagaa ttctgctgtt taataagcac
     4621 tgtttgggga actcagaacc accgtatcct atcccaggaa tacagtgaaa tttccaaata
     4681 agagctgagg tgccaatacc aaaaggccat gggggagtct gcacagttcc ggtcagattg
     4741 gtagaaaatc cacatgtaca actgttaatt cctcattctt cactagcacg aaatttgtca
     4801 ctttaaattt tgaaaccagg gaaacaccac ctgtcattct gtccccattc cccatagctc
     4861 tccgatcttt acatgccaca agactttttt gataattcgt actcatccca gtgtctactg
     4921 aaaccccatc atgtaatgta ccgggcacct tcttaaaaaa aaaaaaaatg tttactctgt
     4981 gggtttggtt catttcaatt tctgcgttct gacacatatt tttttaataa agatgagaaa
     5041 gagaaaatga ctgttgcagt acatttctag acctacttta actttacctc agatgacagt
     5101 ttgttaacat atatggacac attattttta actttatgta caatgcattc aacagaacag
     5161 caaaattttt agaaattttc cattaatttc tgtaacactc catgtaaaac tgttacaaat
     5221 aaac
//
LOCUS       XM_032607160            5272 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DAB adaptor protein 1 (DAB1), transcript
            variant X4, mRNA.
ACCESSION   XM_032607160
VERSION     XM_032607160.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5272
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5272
                     /gene="DAB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740974"
     CDS             259..1857
                     /gene="DAB1"
                     /codon_start=1
                     /product="disabled homolog 1 isoform X4"
                     /protein_id="XP_032463051.1"
                     /db_xref="GeneID:116740974"
                     /translation="MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKA
                     KLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTG
                     ALQQHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQL
                     IYELKQREELEKKAQKDKQCEQAVYQVPTSQKKEGVYDVPKSQPVSNRKLPMDFDEIF
                     EATKAVTQLELFGDMSTPPDITSPPTPATPGDAFIPSSSQTLPASADMFGSVPFGTAA
                     VPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVMPGAQPIAWGQPGLFPATQQP
                     WPTVAGQFAPAAFMPTQTVMPLPAAMFQGPLTPLATVPATGDSARSSPQTDKPRQKMG
                     KEMFKDFQMAQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGVAQDTDDCDDFDISQLNL
                     TPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPTTDDIFEEGFESPSKSEEQEAPDG
                     PQASSNSDPFGEPSGDNISPQAGS"
     misc_feature    331..780
                     /gene="DAB1"
                     /note="Disabled (Dab) Phosphotyrosine-binding domain;
                     Region: PTB_Dab; cd01215"
                     /db_xref="CDD:269926"
     misc_feature    order(391..393,493..495,499..504,628..630,682..684)
                     /gene="DAB1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269926"
     misc_feature    order(424..426,586..600,649..651,709..711,718..723,
                     730..732)
                     /gene="DAB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:269926"
     misc_feature    <949..1494
                     /gene="DAB1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tcggctctcg cccgggcttc cccgggctgg agagcgcgcc taagtgccgc cgcccgccgg
       61 gcatggggaa ccgcttcctg ggcggctgcg gcagcggagg aggaagctct cggcgagcct
      121 agcgctcgaa aggagtgaat gaaatgtgca gctcggggtg tcatttctga agggaggagt
      181 cgttttcttg gagaggagtc ctcaatgagc ctggccgagg cccgggatct gtgtgaagtg
      241 gactaaggat ttagtaggat gtcaactgag acagaacttc aagtagctgt gaaaaccagc
      301 gccaagaaag attccagaaa gaaaggtcag gatcgcagtg aagccacttt gataaagagg
      361 tttaaaggtg aaggggtccg gtacaaggcc aaactgatcg ggattgatga ggtttccgca
      421 gctcggggag acaagttatg ccaagactcc atgatgaaac tcaagggcgt tgttgctggc
      481 gctcgttcca aaggagaaca caaacagaaa atctttttaa ccatctcctt tggaggaatc
      541 aaaatctttg atgagaagac aggggccctt cagcagcatc acgctgttca cgaaatttcc
      601 tacatcgcca aggacatcac agaccaccgg gccttcggat acgtttgtgg gaaggaaggg
      661 aatcacagat tcgtggccat caaaacagcc caggcggctg aacccgttat tctggacttg
      721 agagatctct ttcaacttat ttatgaattg aagcaaagag aagaattgga aaaaaaggca
      781 caaaaggata agcaatgcga acaagctgtg tatcaggttc ccaccagcca aaagaaagaa
      841 ggtgtttatg atgtgccaaa aagtcaacct gtaagtaaca gaaaactgcc gatggacttt
      901 gatgagattt ttgaggcaac aaaggctgtg acccagttag aactttttgg ggacatgtcc
      961 acccctcctg atataacctc tccccccact cctgcaactc caggtgatgc ctttatcccg
     1021 tcttcatctc agacacttcc ggcgagtgca gacatgtttg gttctgtacc tttcggcact
     1081 gctgctgtac cctcaggtta tgttgcaatg ggcgccgtcc tcccatcctt ctggggccag
     1141 cagccccttg tccaacagca gatcgccatg ggtgctcagc caccagtcgc tcaggtgatg
     1201 ccaggggctc agcccatcgc atggggccag ccgggtctct tccctgccac tcagcagccc
     1261 tggcccaccg tggccgggca gtttgcgcca gccgccttca tgcccacaca aactgttatg
     1321 cctttgccag ctgccatgtt ccaaggtccc ctcacccccc ttgcaaccgt cccagccacg
     1381 ggtgactccg ccaggtcaag tccgcagacc gacaagccca ggcagaaaat ggggaaagaa
     1441 atgtttaagg atttccagat ggcccagcct ccacccgtgc cctcccgcaa acctgaccag
     1501 ccctccctca cctgcacctc agaggccttc tccagttact tcaacaaagt cggggtggca
     1561 caggatacag acgattgtga tgactttgac atctcccagt tgaatttgac tcctgtgact
     1621 tctactacac catcgaccaa ctcacctcca accccagccc ctagacagag ctctccatcc
     1681 aaatcatctg catcccacgc cagtgatccg accaccgatg acatctttga agagggcttt
     1741 gaaagtccca gcaaaagtga agagcaagaa gctcctgatg ggccacaggc ctcatccaac
     1801 agtgatccct ttggtgagcc cagtggtgat aatataagtc cacaggccgg tagctagata
     1861 gcgcaggtct gggagctgga gcctctttat gcgcagatca acaagtctaa gaaatagcat
     1921 caatgcgggc ttgtggcggg cgcttcaaga ctggcatgga aatcagcatc gcgacaggct
     1981 ctcttgtatt ctttcacctc acctcatccc acgaagaaat tcacgattgc ccaatggaac
     2041 tcatttggaa gagggaactg agagttttgg gcaaccactg gcagatatct atggcagcac
     2101 aaaaacaaac acacaaaagc ataaaaaatc atacccaacg ttaaatcaca aatcaagcaa
     2161 atgcttactt gacagagagt ctaagctctc ttaacacgtg ggtataagat gacccagtat
     2221 gcgaaaccat agttctcttt ttatttctct accggttggc cactgtaaag acatcaaatt
     2281 tggagtgacg ggcctcagag agttacatca gggttggcac tgacgtcatt taggcaaaag
     2341 taagaggtct ctgtcaccac aatatcatca tccatatgcc tttccaaata ggatgatgta
     2401 tttacatcac tccacaaggc ctggtctgcc atttttttcc cctttccttt ctttgtcatg
     2461 tttgaaaatt aatgggtgta caaatttttg tattgctttc gacttttttt agatattggt
     2521 gaagaaatcg aactgggcaa aaaaaaaaaa aacctcatat gaaatgaatt cacttgaaat
     2581 cacaagacag atgagtggtt gatgattctt tttgatcaag aatgttgcca aaacaaccct
     2641 ttagctcttc tgcatcctgg tgaagaaaga cagctttcgg tttaaccttc actctgtgag
     2701 taggaaagga catcgaatcc cattgatgag aaagatgaaa aaatgcatct gatttcctca
     2761 gaagctctaa actctaagtc caataaaatg agatttttta tttttccgat atcttgctgc
     2821 tgtgatgcta tgcagacagt gtcttctcca cgtgccattt tcaaagaaaa gtcatttgcc
     2881 aaataattat ggtacaatcc tggtaatgtg gtttgagatc ttaaaaaatg actttctaat
     2941 ggaacagtag tgacatgaat attcagagta acaaactgat tctgtggtca caatggttca
     3001 tctctatctc ttttttctac atcagaaaat tcaaatggga tttttatttt ataacttgaa
     3061 acaaaaaaaa gcttaccatt aaactcttta aatatttaag ggaaatggct ttaaggagtt
     3121 ctaatgaaaa aaaattgcca gttttttttt gtaaatatag atgttaatga aaatgctttt
     3181 taataatgcc attacactgt agagaaggta gcagattgag tgaaagatgt gacaaacttg
     3241 atggatgggg ctcactttcc agatgttact ctggagcgta tggtaggaag ctggagttcg
     3301 ggggcagcag gcaggagcag tcgtccaatc agcagctagg gatcaggaaa ggagcgcgtg
     3361 actccatcgg ctaataatct aagcctttcc gcgagcgtac cggccctctg cctaaaacaa
     3421 gaaagagaca gttcacgctc tgaaggcctg tgaactgaaa ctccagtttc agattctgaa
     3481 actccctccc actcctccac tcccagcgac ccccgtagac atcattggac tgtttgtacg
     3541 tgaaacagaa gagtttaagc ttcctttttt tacatttatg agacaaaaag tgcagtgttc
     3601 agttcgtatg tttagcacat gattttcata aagaatctat atattttttg ccctacagag
     3661 aattgttcta caggtcaaat gtgttttcct gatgttccta tgcagttaca gtatgttgaa
     3721 tttagtggtt taacactaag aagaaaactt taaaaaaaat catgtgatga attggattgg
     3781 gggtgggggt gattattctt acttggtttt aaaatttgaa aagtaggatt taccttgata
     3841 tgaatgacgt caattggcct gtgtgctttg attcttcata tcaatagaaa ctaaaatggt
     3901 ttggaagaag gtatacttgg tgaccaagaa aaaaagtgat aagtcaaggt gattgttaac
     3961 tgtttgaagc ccaagtttta cactatccgg tcactggaat ctgaatgttt tccagttaac
     4021 tggaaaaatg tccattacag aatagatgta agtaagcgtc accctaatgt gcaaagtcta
     4081 aagaacccga aacgtgaaaa gggccattta ccttcctctg tagctgtcac atgttggtcg
     4141 acatgatttc ttcaggaatg tgcattcctt tgatgagttg atccttccac atgaagggga
     4201 aaatgggaaa ggtgtgataa ccatgagagc tgtcctgaga ccagttcagc tgtgttttct
     4261 gaggatttga tgagataggc agttcccatg gggaaatgac ttaaatcgct ctgttgtcca
     4321 tgattctgat tctaaaccag tggtgctatc ttctccctca atatggctgt cttgagtttg
     4381 tcttgcagta tcacaccctt ccactgattc cgtgggttgc ttctgacaca ttcaaagtga
     4441 actctggctg atgttgctat ttcaggtaca ccgtatggag ctcatttcat agaagaaagt
     4501 gacagcccag tggacttgtc atcattcact gaatgtgctt gaaaatgtaa ctggctctga
     4561 acttaaagaa gatggcccct gtgatgcatt aaagtgagcg gaataaagtc aagattttaa
     4621 actgccatcc atgttatcat tggcagaatt ctgctgttta ataagcactg tttggggaac
     4681 tcagaaccac cgtatcctat cccaggaata cagtgaaatt tccaaataag agctgaggtg
     4741 ccaataccaa aaggccatgg gggagtctgc acagttccgg tcagattggt agaaaatcca
     4801 catgtacaac tgttaattcc tcattcttca ctagcacgaa atttgtcact ttaaattttg
     4861 aaaccaggga aacaccacct gtcattctgt ccccattccc catagctctc cgatctttac
     4921 atgccacaag acttttttga taattcgtac tcatcccagt gtctactgaa accccatcat
     4981 gtaatgtacc gggcaccttc ttaaaaaaaa aaaaaatgtt tactctgtgg gtttggttca
     5041 tttcaatttc tgcgttctga cacatatttt tttaataaag atgagaaaga gaaaatgact
     5101 gttgcagtac atttctagac ctactttaac tttacctcag atgacagttt gttaacatat
     5161 atggacacat tatttttaac tttatgtaca atgcattcaa cagaacagca aaatttttag
     5221 aaattttcca ttaatttctg taacactcca tgtaaaactg ttacaaataa ac
//
LOCUS       XM_032607170            2631 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DAB adaptor protein 1 (DAB1), transcript
            variant X5, mRNA.
ACCESSION   XM_032607170
VERSION     XM_032607170.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2631
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2631
                     /gene="DAB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740974"
     CDS             259..1851
                     /gene="DAB1"
                     /codon_start=1
                     /product="disabled homolog 1 isoform X5"
                     /protein_id="XP_032463061.1"
                     /db_xref="GeneID:116740974"
                     /translation="MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKA
                     KLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTG
                     ALQQHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQL
                     IYELKQREELEKKAQKDKQCEQAVYQVPTSQKKEGVYDVPKSQPVSNSCTFEDFEERF
                     AVATPNRKLPMDFDEIFEATKAVTQLELFGDMSTPPDITSPPTPATPGDAFIPSSSQT
                     LPASADMFGSVPFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVMPGA
                     QPIAWGQPGLFPATQQPWPTVAGQFAPAAFMPTQTVMPLPAAMFQGPLTPLATVPATG
                     DSARSSPQTDKPRQKMGKEMFKDFQMAQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGV
                     AQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPTTDDIFE
                     EGFESPSKSEEQEAVHRMELIS"
     misc_feature    331..780
                     /gene="DAB1"
                     /note="Disabled (Dab) Phosphotyrosine-binding domain;
                     Region: PTB_Dab; cd01215"
                     /db_xref="CDD:269926"
     misc_feature    order(391..393,493..495,499..504,628..630,682..684)
                     /gene="DAB1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269926"
     misc_feature    order(424..426,586..600,649..651,709..711,718..723,
                     730..732)
                     /gene="DAB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:269926"
     misc_feature    <1000..1545
                     /gene="DAB1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tcggctctcg cccgggcttc cccgggctgg agagcgcgcc taagtgccgc cgcccgccgg
       61 gcatggggaa ccgcttcctg ggcggctgcg gcagcggagg aggaagctct cggcgagcct
      121 agcgctcgaa aggagtgaat gaaatgtgca gctcggggtg tcatttctga agggaggagt
      181 cgttttcttg gagaggagtc ctcaatgagc ctggccgagg cccgggatct gtgtgaagtg
      241 gactaaggat ttagtaggat gtcaactgag acagaacttc aagtagctgt gaaaaccagc
      301 gccaagaaag attccagaaa gaaaggtcag gatcgcagtg aagccacttt gataaagagg
      361 tttaaaggtg aaggggtccg gtacaaggcc aaactgatcg ggattgatga ggtttccgca
      421 gctcggggag acaagttatg ccaagactcc atgatgaaac tcaagggcgt tgttgctggc
      481 gctcgttcca aaggagaaca caaacagaaa atctttttaa ccatctcctt tggaggaatc
      541 aaaatctttg atgagaagac aggggccctt cagcagcatc acgctgttca cgaaatttcc
      601 tacatcgcca aggacatcac agaccaccgg gccttcggat acgtttgtgg gaaggaaggg
      661 aatcacagat tcgtggccat caaaacagcc caggcggctg aacccgttat tctggacttg
      721 agagatctct ttcaacttat ttatgaattg aagcaaagag aagaattgga aaaaaaggca
      781 caaaaggata agcaatgcga acaagctgtg tatcaggttc ccaccagcca aaagaaagaa
      841 ggtgtttatg atgtgccaaa aagtcaacct gtaagtaaca gctgtacgtt tgaagatttt
      901 gaagaacggt ttgcagtggc gacccctaac agaaaactgc cgatggactt tgatgagatt
      961 tttgaggcaa caaaggctgt gacccagtta gaactttttg gggacatgtc cacccctcct
     1021 gatataacct ctccccccac tcctgcaact ccaggtgatg cctttatccc gtcttcatct
     1081 cagacacttc cggcgagtgc agacatgttt ggttctgtac ctttcggcac tgctgctgta
     1141 ccctcaggtt atgttgcaat gggcgccgtc ctcccatcct tctggggcca gcagcccctt
     1201 gtccaacagc agatcgccat gggtgctcag ccaccagtcg ctcaggtgat gccaggggct
     1261 cagcccatcg catggggcca gccgggtctc ttccctgcca ctcagcagcc ctggcccacc
     1321 gtggccgggc agtttgcgcc agccgccttc atgcccacac aaactgttat gcctttgcca
     1381 gctgccatgt tccaaggtcc cctcaccccc cttgcaaccg tcccagccac gggtgactcc
     1441 gccaggtcaa gtccgcagac cgacaagccc aggcagaaaa tggggaaaga aatgtttaag
     1501 gatttccaga tggcccagcc tccacccgtg ccctcccgca aacctgacca gccctccctc
     1561 acctgcacct cagaggcctt ctccagttac ttcaacaaag tcggggtggc acaggataca
     1621 gacgattgtg atgactttga catctcccag ttgaatttga ctcctgtgac ttctactaca
     1681 ccatcgacca actcacctcc aaccccagcc cctagacaga gctctccatc caaatcatct
     1741 gcatcccacg ccagtgatcc gaccaccgat gacatctttg aagagggctt tgaaagtccc
     1801 agcaaaagtg aagagcaaga agctgtacac cgtatggagc tcatttcata gaagaaagtg
     1861 acagcccagt ggacttgtca tcattcactg aatgtgcttg aaaatgtaac tggctctgaa
     1921 cttaaagaag atggcccctg tgatgcatta aagtgagcgg aataaagtca agattttaaa
     1981 ctgccatcca tgttatcatt ggcagaattc tgctgtttaa taagcactgt ttggggaact
     2041 cagaaccacc gtatcctatc ccaggaatac agtgaaattt ccaaataaga gctgaggtgc
     2101 caataccaaa aggccatggg ggagtctgca cagttccggt cagattggta gaaaatccac
     2161 atgtacaact gttaattcct cattcttcac tagcacgaaa tttgtcactt taaattttga
     2221 aaccagggaa acaccacctg tcattctgtc cccattcccc atagctctcc gatctttaca
     2281 tgccacaaga cttttttgat aattcgtact catcccagtg tctactgaaa ccccatcatg
     2341 taatgtaccg ggcaccttct taaaaaaaaa aaaaatgttt actctgtggg tttggttcat
     2401 ttcaatttct gcgttctgac acatattttt ttaataaaga tgagaaagag aaaatgactg
     2461 ttgcagtaca tttctagacc tactttaact ttacctcaga tgacagtttg ttaacatata
     2521 tggacacatt atttttaact ttatgtacaa tgcattcaac agaacagcaa aatttttaga
     2581 aattttccat taatttctgt aacactccat gtaaaactgt tacaaataaa c
//
LOCUS       XM_032607180            5224 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DAB adaptor protein 1 (DAB1), transcript
            variant X6, mRNA.
ACCESSION   XM_032607180
VERSION     XM_032607180.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5224
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5224
                     /gene="DAB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116740974"
     CDS             259..1809
                     /gene="DAB1"
                     /codon_start=1
                     /product="disabled homolog 1 isoform X6"
                     /protein_id="XP_032463071.1"
                     /db_xref="GeneID:116740974"
                     /translation="MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKA
                     KLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTG
                     ALQQHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQL
                     IYELKQREELEKKAQKDKQCEQAVYQVPTSQKKEGVYDVPKSQPVSAVTQLELFGDMS
                     TPPDITSPPTPATPGDAFIPSSSQTLPASADMFGSVPFGTAAVPSGYVAMGAVLPSFW
                     GQQPLVQQQIAMGAQPPVAQVMPGAQPIAWGQPGLFPATQQPWPTVAGQFAPAAFMPT
                     QTVMPLPAAMFQGPLTPLATVPATGDSARSSPQTDKPRQKMGKEMFKDFQMAQPPPVP
                     SRKPDQPSLTCTSEAFSSYFNKVGVAQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTP
                     APRQSSPSKSSASHASDPTTDDIFEEGFESPSKSEEQEAPDGPQASSNSDPFGEPSGD
                     NISPQAGS"
     misc_feature    331..780
                     /gene="DAB1"
                     /note="Disabled (Dab) Phosphotyrosine-binding domain;
                     Region: PTB_Dab; cd01215"
                     /db_xref="CDD:269926"
     misc_feature    order(391..393,493..495,499..504,628..630,682..684)
                     /gene="DAB1"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:269926"
     misc_feature    order(424..426,586..600,649..651,709..711,718..723,
                     730..732)
                     /gene="DAB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:269926"
     misc_feature    <856..1446
                     /gene="DAB1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tcggctctcg cccgggcttc cccgggctgg agagcgcgcc taagtgccgc cgcccgccgg
       61 gcatggggaa ccgcttcctg ggcggctgcg gcagcggagg aggaagctct cggcgagcct
      121 agcgctcgaa aggagtgaat gaaatgtgca gctcggggtg tcatttctga agggaggagt
      181 cgttttcttg gagaggagtc ctcaatgagc ctggccgagg cccgggatct gtgtgaagtg
      241 gactaaggat ttagtaggat gtcaactgag acagaacttc aagtagctgt gaaaaccagc
      301 gccaagaaag attccagaaa gaaaggtcag gatcgcagtg aagccacttt gataaagagg
      361 tttaaaggtg aaggggtccg gtacaaggcc aaactgatcg ggattgatga ggtttccgca
      421 gctcggggag acaagttatg ccaagactcc atgatgaaac tcaagggcgt tgttgctggc
      481 gctcgttcca aaggagaaca caaacagaaa atctttttaa ccatctcctt tggaggaatc
      541 aaaatctttg atgagaagac aggggccctt cagcagcatc acgctgttca cgaaatttcc
      601 tacatcgcca aggacatcac agaccaccgg gccttcggat acgtttgtgg gaaggaaggg
      661 aatcacagat tcgtggccat caaaacagcc caggcggctg aacccgttat tctggacttg
      721 agagatctct ttcaacttat ttatgaattg aagcaaagag aagaattgga aaaaaaggca
      781 caaaaggata agcaatgcga acaagctgtg tatcaggttc ccaccagcca aaagaaagaa
      841 ggtgtttatg atgtgccaaa aagtcaacct gtaagtgctg tgacccagtt agaacttttt
      901 ggggacatgt ccacccctcc tgatataacc tctcccccca ctcctgcaac tccaggtgat
      961 gcctttatcc cgtcttcatc tcagacactt ccggcgagtg cagacatgtt tggttctgta
     1021 cctttcggca ctgctgctgt accctcaggt tatgttgcaa tgggcgccgt cctcccatcc
     1081 ttctggggcc agcagcccct tgtccaacag cagatcgcca tgggtgctca gccaccagtc
     1141 gctcaggtga tgccaggggc tcagcccatc gcatggggcc agccgggtct cttccctgcc
     1201 actcagcagc cctggcccac cgtggccggg cagtttgcgc cagccgcctt catgcccaca
     1261 caaactgtta tgcctttgcc agctgccatg ttccaaggtc ccctcacccc ccttgcaacc
     1321 gtcccagcca cgggtgactc cgccaggtca agtccgcaga ccgacaagcc caggcagaaa
     1381 atggggaaag aaatgtttaa ggatttccag atggcccagc ctccacccgt gccctcccgc
     1441 aaacctgacc agccctccct cacctgcacc tcagaggcct tctccagtta cttcaacaaa
     1501 gtcggggtgg cacaggatac agacgattgt gatgactttg acatctccca gttgaatttg
     1561 actcctgtga cttctactac accatcgacc aactcacctc caaccccagc ccctagacag
     1621 agctctccat ccaaatcatc tgcatcccac gccagtgatc cgaccaccga tgacatcttt
     1681 gaagagggct ttgaaagtcc cagcaaaagt gaagagcaag aagctcctga tgggccacag
     1741 gcctcatcca acagtgatcc ctttggtgag cccagtggtg ataatataag tccacaggcc
     1801 ggtagctaga tagcgcaggt ctgggagctg gagcctcttt atgcgcagat caacaagtct
     1861 aagaaatagc atcaatgcgg gcttgtggcg ggcgcttcaa gactggcatg gaaatcagca
     1921 tcgcgacagg ctctcttgta ttctttcacc tcacctcatc ccacgaagaa attcacgatt
     1981 gcccaatgga actcatttgg aagagggaac tgagagtttt gggcaaccac tggcagatat
     2041 ctatggcagc acaaaaacaa acacacaaaa gcataaaaaa tcatacccaa cgttaaatca
     2101 caaatcaagc aaatgcttac ttgacagaga gtctaagctc tcttaacacg tgggtataag
     2161 atgacccagt atgcgaaacc atagttctct ttttatttct ctaccggttg gccactgtaa
     2221 agacatcaaa tttggagtga cgggcctcag agagttacat cagggttggc actgacgtca
     2281 tttaggcaaa agtaagaggt ctctgtcacc acaatatcat catccatatg cctttccaaa
     2341 taggatgatg tatttacatc actccacaag gcctggtctg ccattttttt cccctttcct
     2401 ttctttgtca tgtttgaaaa ttaatgggtg tacaaatttt tgtattgctt tcgacttttt
     2461 ttagatattg gtgaagaaat cgaactgggc aaaaaaaaaa aaaacctcat atgaaatgaa
     2521 ttcacttgaa atcacaagac agatgagtgg ttgatgattc tttttgatca agaatgttgc
     2581 caaaacaacc ctttagctct tctgcatcct ggtgaagaaa gacagctttc ggtttaacct
     2641 tcactctgtg agtaggaaag gacatcgaat cccattgatg agaaagatga aaaaatgcat
     2701 ctgatttcct cagaagctct aaactctaag tccaataaaa tgagattttt tatttttccg
     2761 atatcttgct gctgtgatgc tatgcagaca gtgtcttctc cacgtgccat tttcaaagaa
     2821 aagtcatttg ccaaataatt atggtacaat cctggtaatg tggtttgaga tcttaaaaaa
     2881 tgactttcta atggaacagt agtgacatga atattcagag taacaaactg attctgtggt
     2941 cacaatggtt catctctatc tcttttttct acatcagaaa attcaaatgg gatttttatt
     3001 ttataacttg aaacaaaaaa aagcttacca ttaaactctt taaatattta agggaaatgg
     3061 ctttaaggag ttctaatgaa aaaaaattgc cagttttttt ttgtaaatat agatgttaat
     3121 gaaaatgctt tttaataatg ccattacact gtagagaagg tagcagattg agtgaaagat
     3181 gtgacaaact tgatggatgg ggctcacttt ccagatgtta ctctggagcg tatggtagga
     3241 agctggagtt cgggggcagc aggcaggagc agtcgtccaa tcagcagcta gggatcagga
     3301 aaggagcgcg tgactccatc ggctaataat ctaagccttt ccgcgagcgt accggccctc
     3361 tgcctaaaac aagaaagaga cagttcacgc tctgaaggcc tgtgaactga aactccagtt
     3421 tcagattctg aaactccctc ccactcctcc actcccagcg acccccgtag acatcattgg
     3481 actgtttgta cgtgaaacag aagagtttaa gcttcctttt tttacattta tgagacaaaa
     3541 agtgcagtgt tcagttcgta tgtttagcac atgattttca taaagaatct atatattttt
     3601 tgccctacag agaattgttc tacaggtcaa atgtgttttc ctgatgttcc tatgcagtta
     3661 cagtatgttg aatttagtgg tttaacacta agaagaaaac tttaaaaaaa atcatgtgat
     3721 gaattggatt gggggtgggg gtgattattc ttacttggtt ttaaaatttg aaaagtagga
     3781 tttaccttga tatgaatgac gtcaattggc ctgtgtgctt tgattcttca tatcaataga
     3841 aactaaaatg gtttggaaga aggtatactt ggtgaccaag aaaaaaagtg ataagtcaag
     3901 gtgattgtta actgtttgaa gcccaagttt tacactatcc ggtcactgga atctgaatgt
     3961 tttccagtta actggaaaaa tgtccattac agaatagatg taagtaagcg tcaccctaat
     4021 gtgcaaagtc taaagaaccc gaaacgtgaa aagggccatt taccttcctc tgtagctgtc
     4081 acatgttggt cgacatgatt tcttcaggaa tgtgcattcc tttgatgagt tgatccttcc
     4141 acatgaaggg gaaaatggga aaggtgtgat aaccatgaga gctgtcctga gaccagttca
     4201 gctgtgtttt ctgaggattt gatgagatag gcagttccca tggggaaatg acttaaatcg
     4261 ctctgttgtc catgattctg attctaaacc agtggtgcta tcttctccct caatatggct
     4321 gtcttgagtt tgtcttgcag tatcacaccc ttccactgat tccgtgggtt gcttctgaca
     4381 cattcaaagt gaactctggc tgatgttgct atttcaggta caccgtatgg agctcatttc
     4441 atagaagaaa gtgacagccc agtggacttg tcatcattca ctgaatgtgc ttgaaaatgt
     4501 aactggctct gaacttaaag aagatggccc ctgtgatgca ttaaagtgag cggaataaag
     4561 tcaagatttt aaactgccat ccatgttatc attggcagaa ttctgctgtt taataagcac
     4621 tgtttgggga actcagaacc accgtatcct atcccaggaa tacagtgaaa tttccaaata
     4681 agagctgagg tgccaatacc aaaaggccat gggggagtct gcacagttcc ggtcagattg
     4741 gtagaaaatc cacatgtaca actgttaatt cctcattctt cactagcacg aaatttgtca
     4801 ctttaaattt tgaaaccagg gaaacaccac ctgtcattct gtccccattc cccatagctc
     4861 tccgatcttt acatgccaca agactttttt gataattcgt actcatccca gtgtctactg
     4921 aaaccccatc atgtaatgta ccgggcacct tcttaaaaaa aaaaaaaatg tttactctgt
     4981 gggtttggtt catttcaatt tctgcgttct gacacatatt tttttaataa agatgagaaa
     5041 gagaaaatga ctgttgcagt acatttctag acctacttta actttacctc agatgacagt
     5101 ttgttaacat atatggacac attattttta actttatgta caatgcattc aacagaacag
     5161 caaaattttt agaaattttc cattaatttc tgtaacactc catgtaaaac tgttacaaat
     5221 aaac
//
LOCUS       XM_032607195            1260 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus EBNA1 binding protein 2 (EBNA1BP2), mRNA.
ACCESSION   XM_032607195
VERSION     XM_032607195.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1260
                     /gene="EBNA1BP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, 3 long SRA reads, 6
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116740989"
     CDS             207..1124
                     /gene="EBNA1BP2"
                     /codon_start=1
                     /product="probable rRNA-processing protein EBP2"
                     /protein_id="XP_032463086.1"
                     /db_xref="GeneID:116740989"
                     /translation="MDTPPLSGSDSDSDDSLVTDRELQEAFSRGLLKPGLNVVLEGPK
                     KAVNDVNGLKQCLAEFKRDLEWVERLDVTLGPVPAIRGPQATSQNKDQKAVDPEDDFQ
                     REMSFYCQAQAAVLAVLPRLHQLKVPTKRPTDYFAEMAKSDQQMQKIRQKLQAKQVAM
                     ERSEKAKQLRALRKYGKKVQTEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKP
                     VARSTKEGAKGQQMKKGPSAKRRYKNQRFGYGGKKKGSKWNTRESYDDVSGFRAKIAH
                     GKGLKRPGKKGSNKRPGKRTREKMKSRTR"
     misc_feature    345..1088
                     /gene="EBNA1BP2"
                     /note="Eukaryotic rRNA processing protein EBP2; Region:
                     Ebp2; pfam05890"
                     /db_xref="CDD:461770"
ORIGIN      
        1 agccggaagc ggaactccta tcagaaagtt cagctgcatc tgggggcttt cgggagctgg
       61 tgctgttcga gtccacgtgg agcagcgggc aggagggcag ggggctgaaa gcgggcggag
      121 gtggcgacga ggggagccct tttccaggcg cgggggcctc gggcgccttc gcttcctccg
      181 gcgggtgtgg acgtgcgtgc tgggagatgg acactccccc gctctcaggt tcggactcgg
      241 attctgacga ctcccttgtc acagacagag agttgcagga ggcgttttcc cgagggcttc
      301 tgaagccagg cctcaacgtg gtgctagagg ggccgaagaa ggccgtgaac gacgtgaatg
      361 gcctgaagca gtgtttggct gaattcaaac gggatctgga atgggttgaa aggcttgatg
      421 tgaccctggg tccggtaccg gcaatccgtg gaccgcaggc aacatctcag aacaaggatc
      481 agaaagctgt tgatccagaa gatgactttc agcgtgagat gagcttctac tgtcaggccc
      541 aggcagcagt gcttgcagta ttgccccgcc tccatcagct caaagtccct accaagcggc
      601 ccacggatta ttttgcagag atggccaagt ctgatcagca gatgcagaag attcgacaga
      661 agctgcaggc taaacaggtc gccatggaga ggtcggaaaa ggctaagcag ctgcgagcac
      721 ttaggaaata cggaaagaag gtgcaaacag aagttcttca gaagcggcag cgggagaaag
      781 cacacatgat gagtgccatt aagaaatatc agaaaggctt ctctgataaa ctggacttcc
      841 tggagggaga tcagaagccc gtcgcacgga gcacgaaaga aggagccaaa ggccagcaga
      901 tgaagaaggg gcccagtgcc aagcgacgct ataaaaacca gaggtttggt tatggtggga
      961 agaagaaagg ctccaagtgg aacactcgtg agagctatga tgatgtatcc ggcttccggg
     1021 ccaagatagc tcatggcaag ggcctcaaga ggcctggaaa gaaaggatca aataagagac
     1081 ccggaaaacg gacaagagag aaaatgaaga gcagaacacg ctaaataggc agcgtctttg
     1141 tatacaaaga ccaagaaaaa gggatggaga cttgggattt cacaatgcaa ttggatccct
     1201 tctgttggtt tccttttgta aaaattcttt caataaacta aagaaaaatt ttcagagaaa
//
LOCUS       XM_032607205            3990 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 57
            (CFAP57), mRNA.
ACCESSION   XM_032607205
VERSION     XM_032607205.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3990
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3990
                     /gene="CFAP57"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 32%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116740995"
     CDS             146..3898
                     /gene="CFAP57"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 57"
                     /protein_id="XP_032463096.1"
                     /db_xref="GeneID:116740995"
                     /translation="MSTVVAQSLHVFGLRSHVSNNVFFFDEQIIIFPSGNHCVKYNVD
                     QKWQKFIPGSDKSQGMLALSISPNRRYLAISETVQEKPVITIYELSAVPCRKRKVLNN
                     FDFPVQKFICMAFSPDSKYLLTQTSPPESNLVYWLWEKQKVMAIVRTDTQNNAVYQVS
                     FNPQDNAQICVTGNGMFKLLRFAEGTLKQTNFQRGEPQNYLAHTWVSDDKIVAGTDTG
                     RLFLFESGDQRWETSIMVREPTSEMKNLGVIQESESLIEFPTITSPVPSYKQVVMASS
                     HHQLSLPQVSAIAAYSKGFACSAGPGRVLLFEKIEEKGFYRESREIRIPVDPQSNDPS
                     QSDKQDVLCMCFSPSEEMLIASTSKNQLYSITMSLMEISKGEPARFEYLMYPLHSASI
                     TGLATCIRKPLIATCSVDRSVRIWNYESNTLELFKEYQEEAYTISLHPSGHYVVVGFA
                     DKLRLMNLLIDDIRSFKEYPVRGCKECCFSNGGHLFAAVNGNVIHIFSTTSLENISNL
                     KGHTGKIRSVVWNTDDSKLISCGTDGAVYEWNLSTGKRETECVLKSCSYNCVTISPDG
                     KIIFAVGSDQTLKEIADSSVLREISAFDVTYTAIVVSHSGHMMFVGTSVGTVRAMKYP
                     LPLQKEFNEYQAHCGPITKMSLTFDDQFLLSVAEDGCLFTWKVFDKDGPGIKREREVG
                     FAEEVLVTKTDMEEKVQIMLELKTRVEELKMENAYQLRLKDMNYSEKVKELTDKFLQE
                     MESLEMKNQVLRAEKEKQDALHRERMEDLLEKQSQELQDLECCNNQKLLLEYEKYQEL
                     QLKSQRMQEEYEKQLRDNDETKSQALEELTEFYETKLQEKTTLLEEAQEDIRQQLREF
                     EETKKQIEEDEDREIQDIKTKYEKKLRDEKESNLRLKGETGIMRKKFSSLQKEIEERT
                     NDTEILKGEQVKLQVVIKSLEKDILGLKQEIQERDETIQDKEKRIYDLKKKNQELEKF
                     KFVLDYKIKELKKQIEPRENEIKVMKEQIQKMETELEHFHKQNTQLELNITELWQKLR
                     ATDQEMHRERQKERNLEALVKQFKTDLHNCVAYIQEPRQLKEKFRALFEKYVQRADMV
                     EITGLNSDLQQEYSRQREHLERSLATLKKKVVKESELHRADYVRIMQENVSLIKEINE
                     LRRELKFTRSQVYDLEAALKLTKKIQPQDVPETVSRKDLPGLPPTMRLNEQEETGRII
                     EMQRLEIQRLRDQIQEQEQVPGFHPFTGMRLPSLLGAEADLKLQTK"
     misc_feature    176..304
                     /gene="CFAP57"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    326..457
                     /gene="CFAP57"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    476..592
                     /gene="CFAP57"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1166..1306
                     /gene="CFAP57"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1298..1396
                     /gene="CFAP57"
                     /note="WD40 repeats; Region: WD40; smart00320"
                     /db_xref="CDD:197651"
     misc_feature    1322..1432
                     /gene="CFAP57"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1352..2146
                     /gene="CFAP57"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1442..1546
                     /gene="CFAP57"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1568..1672
                     /gene="CFAP57"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1688..1804
                     /gene="CFAP57"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <2171..2944
                     /gene="CFAP57"
                     /note="Family of unknown function (DUF5401); Region:
                     DUF5401; pfam17380"
                     /db_xref="CDD:375164"
     misc_feature    <2603..3643
                     /gene="CFAP57"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 acttccggtt tcccgttgct ataggaaccg ctccggcgtc tgggagtgca gcgttgcttg
       61 ggattcgtag gcgtagtacc ctgtatacac gcgtgctctg gtgatctaga gagcagaagc
      121 gacagcgaaa ctccttactg ggaccatgtc cactgtggta gctcagtcgc tgcatgtttt
      181 tggtcttcga tcccacgtgt ccaacaatgt gttcttcttc gatgaacaga tcattatatt
      241 tccttcagga aatcactgtg tgaagtacaa tgtggatcag aagtggcaaa aattcattcc
      301 aggctcagac aagagtcagg gcatgttggc cttgtccatc agtcccaatc ggcgatacct
      361 cgctatctct gagactgtgc aagaaaaacc cgtcatcacc atttatgaac tgtcagccgt
      421 tccttgccga aagcgcaaag tccttaataa ttttgacttc ccagttcaga agttcatttg
      481 catggctttt tctccagact ccaaatacct cttgacccag acctcacctc cagagtcaaa
      541 ccttgtctat tggctgtggg aaaaacagaa agtaatggcc atcgttagaa ctgatactca
      601 gaacaatgct gtctaccagg tgagcttcaa tccccaggat aacgctcaga tttgtgtcac
      661 tggaaatggg atgtttaagc ttctccgttt tgctgaggga accttgaagc aaactaattt
      721 tcagagggga gaaccccaaa actatctcgc ccacacttgg gtgtctgatg acaagattgt
      781 tgctggcact gatacaggca ggctcttcct ctttgagtct ggagatcaac gctgggagac
      841 aagtatcatg gtcagggagc ccaccagcga gatgaagaac ctgggggtga tccaggaatc
      901 cgagagcctg atcgaatttc cgacaatcac ctccccagtc ccttcctaca agcaggtcgt
      961 gatggccagt agccaccacc agctgtccct gccccaggtg tctgccatcg cagcctattc
     1021 caagggattt gcctgctctg ctgggccagg gagagttcta ctgtttgaga agatagaaga
     1081 gaaggggttt tatcgtgaga gcagggaaat ccggattcct gtggacccac agagcaatga
     1141 cccgagtcag tcagacaaac aggacgtgct ctgcatgtgc ttcagcccct ctgaggaaat
     1201 gctgatcgcc agcaccagca agaaccagct ctacagcatc accatgtccc tgatggagat
     1261 cagcaagggg gagcctgccc gctttgagta tctgatgtac ccgttacact cagcatccat
     1321 cactggtcta gctacttgca tccgcaaacc cctcattgcc acctgctctg tggatcggtc
     1381 tgttcgcatc tggaattacg aatcaaacac cctggaacta tttaaggaat accaagaaga
     1441 agcttataca atcagccttc acccatctgg acactacgtt gtagtagggt ttgctgacaa
     1501 actacgcctt atgaatctac tcattgatga tatacgttct ttcaaagaat accctgtcag
     1561 agggtgcaaa gagtgttgct ttagcaatgg aggtcacctg tttgctgcag tcaatgggaa
     1621 tgtgattcac attttttcca ccaccagcct ggagaacatc tcgaatctga aaggacacac
     1681 agggaagatt cgttcagttg tatggaatac agatgacagc aaactgattt cttgtggcac
     1741 ggatggtgct gtatatgaat ggaatctgtc cacaggaaag agagagacag aatgtgtgct
     1801 caagtcctgc agttacaact gtgttaccat ctcccctgat ggcaaaatca tctttgctgt
     1861 tggatcagac cagactctca aggagatcgc agattcttca gtccttcgag agatatcagc
     1921 atttgacgtc acctacacag ccatcgtcgt ctcccactcc ggacacatga tgttcgtggg
     1981 cacctcggtg ggaaccgttc gtgcgatgaa gtacccgctg cctctgcaga aagaattcaa
     2041 cgagtaccag gcccattgcg gtcctatcac caagatgtcg ctcacctttg atgaccagtt
     2101 cctgctgagc gtcgccgagg atggctgcct gttcacctgg aaggtctttg ataaggatgg
     2161 tccgggaatc aagcgagaga gggaggtggg ctttgctgaa gaggtgctgg ttaccaagac
     2221 ggacatggaa gagaaggttc agattatgtt ggagctgaag actcgtgtgg aagaattaaa
     2281 aatggagaat gcgtatcaac ttcgactaaa ggatatgaac tattctgaga aggttaagga
     2341 actaacagac aagttcctcc aggaaatgga gtccttggaa atgaaaaacc aggttttaag
     2401 agcagaaaaa gaaaagcagg atgcactcca tcgtgaacgc atggaagacc tcctggaaaa
     2461 acagagccag gaactgcagg acttggaatg ttgcaacaac caaaagttgc ttctagaata
     2521 tgagaagtac caggagttgc agctcaagtc ccagaggatg caggaagagt atgagaaaca
     2581 gcttcgggat aacgatgaga ccaagagcca ggccctggag gagctgactg agttttacga
     2641 gaccaaactg caggagaaaa ccaccctcct ggaagaggcc caggaggata tcaggcagca
     2701 gctgcgcgag tttgaagaga ccaagaagca gattgaagaa gacgaagacc gtgagatcca
     2761 agatatcaaa accaagtatg agaagaagct tcgggatgaa aaggaatcaa acctgcggct
     2821 caaaggagaa acgggcatca tgaggaagaa gttcagcagc ctgcagaaag agattgaaga
     2881 gcgaaccaac gacactgaga ttctgaaggg agaacaggtg aagctgcaag tagtcatcaa
     2941 gtccctggag aaggacatcc tgggtctcaa gcaggagatc caggaaagag acgagacgat
     3001 tcaggataag gagaagcgaa tctatgatct gaaaaagaaa aatcaagaac tagagaaatt
     3061 caagtttgtg cttgactaca aaataaagga gctgaagaag caaatagaac ctcgagagaa
     3121 tgagatcaag gtgatgaagg aacagattca aaagatggaa actgaactgg agcatttcca
     3181 taagcagaac acacagctgg agctgaacat cacagaattg tggcagaaat taagagctac
     3241 tgatcaggag atgcacagag agagacaaaa ggagcggaac ttggaggcgc tggtcaaaca
     3301 gtttaagacg gaccttcaca actgtgtggc gtacatccaa gaaccccggc agctgaagga
     3361 gaagtttcgc gctctctttg agaagtacgt gcagcgagca gacatggtag agatcacagg
     3421 gctgaactcg gacctgcagc aggagtacag ccgtcagcgg gagcacctgg agaggagcct
     3481 ggccaccctc aagaagaagg tggtcaagga gagtgagctg caccgcgcag attacgtccg
     3541 catcatgcag gaaaatgtct ccctgatcaa ggagattaat gagctccgca gagagctgaa
     3601 gttcacccgc tcccaagtct atgaccttga agcagccctg aaactgacca agaaaattca
     3661 accacaagac gttccagaga cagtgtcccg caaagactta ccaggcttgc ctcccaccat
     3721 gagactgaat gagcaagaag aaactgggag aatcattgag atgcagcgcc tggagatcca
     3781 gcgcctcaga gaccagatcc aagagcagga gcaggtccca ggcttccacc ccttcactgg
     3841 gatgcggctg ccttccctcc tgggggcaga agcagactta aagctgcaga ccaagtgacc
     3901 cactctggtg agccgtctcc agccacgccg gaagaagcac ggtgctccag tccccagcct
     3961 gactctgggc tgcagcccct gcagccctga
//
LOCUS       XM_032607216            1712 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 125 (TMEM125),
            transcript variant X1, mRNA.
ACCESSION   XM_032607216
VERSION     XM_032607216.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1712
                     /gene="TMEM125"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741003"
     CDS             399..1058
                     /gene="TMEM125"
                     /codon_start=1
                     /product="transmembrane protein 125"
                     /protein_id="XP_032463107.1"
                     /db_xref="GeneID:116741003"
                     /translation="MSEGGARAPPGRGLPPDVLAEQVELWWSQQPRRSALCFAVAVGL
                     VAGCGAGGVALLSSTSSRSGEWRLAVGTVLCLLALLVLVKQLMSSAVQDMNCIRQPRH
                     VALLRSGGGADALVVLLSGLVLLVTGLTLAGLAAAPAPARPLAAMLSVGITLAASGAL
                     LLLGLLLYQVAVSGHCPPTCAAAPSARSDHSGNGSVFSISGRLSAGQHHETTSSIASL
                     I"
     misc_feature    450..740
                     /gene="TMEM125"
                     /note="TMEM125 protein family; Region: TMEM125; pfam15109"
                     /db_xref="CDD:464508"
ORIGIN      
        1 ccaggtgcag gtcaggcagg tgaagcgcct ccccggaaac agagctggag cgccccacct
       61 gcccgccctg cctgctcaga tcggatccag cacctccagg cttcttgagc cagcggtgac
      121 agctgaggcc atgtgagtcg gatcctgaat gaggctttat ctctgggtct ccatccagtc
      181 ccatcgtcca ccgtggcacc agctccctcg gccagcctgg atgggacagg caactgagac
      241 agccagagcc agagaggtga tggtgaccat cccctggacc atgcgaggaa caggactctg
      301 ggcctctggc cgtcgcgcag gtagtggggg ctccaggcca tgatccgtac ctctgccccc
      361 tgacgcggcc ctccgccctt actcgtgccg gatcagccat gtctgaggga ggggctcggg
      421 ccccgccggg ccgggggctg ccgccggatg tgctggcaga gcaggtggag ctgtggtggt
      481 cccagcagcc gcggcgctca gcgctctgct tcgccgtggc tgtgggcctc gtggcgggct
      541 gtggggcggg cggcgtggcc ctgctgtcct ccaccagcag ccgctcgggc gagtggcgtc
      601 tggcggtggg cacggtgctc tgcctgctgg ccctgctggt cctggttaag cagctgatga
      661 gctcggccgt gcaggacatg aactgcatcc gccagccccg ccacgtggcc ctgctccgca
      721 gcggcggcgg ggccgacgcc ctagtggtgc tgctcagcgg cctggtgctg ctggtcaccg
      781 gcttgacgct ggcagggctg gccgccgccc ctgcccccgc ccggccgctg gccgccatgc
      841 tgtccgtggg catcaccctg gctgcctcag gtgcgctctt gctgctgggc ctgctgctgt
      901 atcaggtggc cgtgagcgga cactgtcccc ctacctgtgc ggccgccccc tccgcccgca
      961 gtgaccacag tgggaatggc agcgtcttca gcatctcagg acggttgtcc gctggccagc
     1021 atcacgagac cacgtccagc atcgccagcc tcatctgacg gagcccgggc cctgcttccc
     1081 gtgacctgcc tcagcctcca cagagccgtg cccgggcgcg agtgagggtg tgtgcacacg
     1141 cgtgtgtgca cacgcaaggg gagagtgact gcatgggtgt ccccaggact gctcagccct
     1201 ctgagtgact gtgtgactgt gatgaggggc cgatttgcac ccacacaccc acgtcacaag
     1261 gagggaactg cttctccttg gagctcggga accgtcagtc tgcctgtctg tgtccggggc
     1321 ctctaggcag agaagggtct gggatccctg aagatccctg gcccctatcc ctaacacccc
     1381 tcaaaggcaa ctctgccctg taacacctgt cagggatttc cccaggagag gctgctgcct
     1441 gccccagaga ctgcgccagt gagccctttt atcaaggaga ctgaatggtg atagagtgga
     1501 cagaacacag gctccggcat gacaggcctg ggctgcagtc cccccctcta ccacttacca
     1561 ggtgggggcc ttgggcaagt ggcttaacct ctctgagccc cggtttcttg agcgtcacgg
     1621 tcacggtcat caattgttag gatcaaatga tattatttac gtatagaagg accgggcaca
     1681 cggcagatgt gcaataaaag tggtgactgc ta
//
LOCUS       XM_032607224            1640 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 125 (TMEM125),
            transcript variant X2, mRNA.
ACCESSION   XM_032607224
VERSION     XM_032607224.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1640
                     /gene="TMEM125"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741003"
     CDS             327..986
                     /gene="TMEM125"
                     /codon_start=1
                     /product="transmembrane protein 125"
                     /protein_id="XP_032463115.1"
                     /db_xref="GeneID:116741003"
                     /translation="MSEGGARAPPGRGLPPDVLAEQVELWWSQQPRRSALCFAVAVGL
                     VAGCGAGGVALLSSTSSRSGEWRLAVGTVLCLLALLVLVKQLMSSAVQDMNCIRQPRH
                     VALLRSGGGADALVVLLSGLVLLVTGLTLAGLAAAPAPARPLAAMLSVGITLAASGAL
                     LLLGLLLYQVAVSGHCPPTCAAAPSARSDHSGNGSVFSISGRLSAGQHHETTSSIASL
                     I"
     misc_feature    378..668
                     /gene="TMEM125"
                     /note="TMEM125 protein family; Region: TMEM125; pfam15109"
                     /db_xref="CDD:464508"
ORIGIN      
        1 ccaggtgcag gtcaggcagg tgaagcgcct ccccggaaac agagctggag cgccccacct
       61 gcccgccctg cctgctcaga tcggatccag cacctccagg cttctttccc atcgtccacc
      121 gtggcaccag ctccctcggc cagcctggat gggacaggca actgagacag ccagagccag
      181 agaggtgatg gtgaccatcc cctggaccat gcgaggaaca ggactctggg cctctggccg
      241 tcgcgcaggt agtgggggct ccaggccatg atccgtacct ctgccccctg acgcggccct
      301 ccgcccttac tcgtgccgga tcagccatgt ctgagggagg ggctcgggcc ccgccgggcc
      361 gggggctgcc gccggatgtg ctggcagagc aggtggagct gtggtggtcc cagcagccgc
      421 ggcgctcagc gctctgcttc gccgtggctg tgggcctcgt ggcgggctgt ggggcgggcg
      481 gcgtggccct gctgtcctcc accagcagcc gctcgggcga gtggcgtctg gcggtgggca
      541 cggtgctctg cctgctggcc ctgctggtcc tggttaagca gctgatgagc tcggccgtgc
      601 aggacatgaa ctgcatccgc cagccccgcc acgtggccct gctccgcagc ggcggcgggg
      661 ccgacgccct agtggtgctg ctcagcggcc tggtgctgct ggtcaccggc ttgacgctgg
      721 cagggctggc cgccgcccct gcccccgccc ggccgctggc cgccatgctg tccgtgggca
      781 tcaccctggc tgcctcaggt gcgctcttgc tgctgggcct gctgctgtat caggtggccg
      841 tgagcggaca ctgtccccct acctgtgcgg ccgccccctc cgcccgcagt gaccacagtg
      901 ggaatggcag cgtcttcagc atctcaggac ggttgtccgc tggccagcat cacgagacca
      961 cgtccagcat cgccagcctc atctgacgga gcccgggccc tgcttcccgt gacctgcctc
     1021 agcctccaca gagccgtgcc cgggcgcgag tgagggtgtg tgcacacgcg tgtgtgcaca
     1081 cgcaagggga gagtgactgc atgggtgtcc ccaggactgc tcagccctct gagtgactgt
     1141 gtgactgtga tgaggggccg atttgcaccc acacacccac gtcacaagga gggaactgct
     1201 tctccttgga gctcgggaac cgtcagtctg cctgtctgtg tccggggcct ctaggcagag
     1261 aagggtctgg gatccctgaa gatccctggc ccctatccct aacacccctc aaaggcaact
     1321 ctgccctgta acacctgtca gggatttccc caggagaggc tgctgcctgc cccagagact
     1381 gcgccagtga gcccttttat caaggagact gaatggtgat agagtggaca gaacacaggc
     1441 tccggcatga caggcctggg ctgcagtccc cccctctacc acttaccagg tgggggcctt
     1501 gggcaagtgg cttaacctct ctgagccccg gtttcttgag cgtcacggtc acggtcatca
     1561 attgttagga tcaaatgata ttatttacgt atagaaggac cgggcacacg gcagatgtgc
     1621 aataaaagtg gtgactgcta
//
LOCUS       XM_032607237            5221 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WASP family member 2 (WASF2), transcript
            variant X1, mRNA.
ACCESSION   XM_032607237
VERSION     XM_032607237.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5221
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5221
                     /gene="WASF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 17 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116741029"
     CDS             228..1724
                     /gene="WASF2"
                     /codon_start=1
                     /product="wiskott-Aldrich syndrome protein family member
                     2"
                     /protein_id="XP_032463128.1"
                     /db_xref="GeneID:116741029"
                     /translation="MPLVTRNIEPRHLCRQTLPSVRSELECMTNITLANVIRQLGSLS
                     KYAEDIFGELFTQANTFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRS
                     STVQDQKLFDRNSLPIPVLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLW
                     KEKMLQDTKDIMKEKRKHRKEKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEK
                     LGPSGYPPTLVYQNGSVGSVDNVDASNYPPPPQSDSTSPPSPSFSEDSLPPPPAEFSY
                     PADSNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPMMSTPP
                     PPPLGGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYSPLPPPPLSQPAGGAPP
                     PPPPPPPPGPPPPPFSGADGQPAAPSPLSDTTKPKSSLPPVSDARSDLLSAIRQGFQL
                     RRVEEQREQEKRDVVGNDVATILSRRIAVEYSDSEDDSSEFDEDEWSD"
     misc_feature    1509..1715
                     /gene="WASF2"
                     /note="Wiskott-Aldrich Syndrome Homology (WASP) region 2
                     (WH2 motif), and similar proteins; Region: WH2; cl41728"
                     /db_xref="CDD:425359"
     misc_feature    order(1533..1538,1542..1550,1554..1562,1575..1586)
                     /gene="WASF2"
                     /note="actin-binding motif [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409196"
ORIGIN      
        1 cccggggcgg ggaatcgcgt aatggcggac gcgggccggt ttagcgcggc tgggggcgta
       61 gcgcgctgag gggggtctgg ctgtgtggca gcgcgcgacg cggccggcga gaacggaccc
      121 cgtgcggaga agggcggccg gccggccagc ctctctgttg ctgagggcga ccgcgcgaga
      181 ccaggttgtt tttcatcatt cagaacgttg cctgaagcag gtccaccatg ccgttagtaa
      241 cgaggaacat cgagccaagg cacctgtgcc gtcagacgtt gcctagcgtt agaagcgagc
      301 tggaatgcat gaccaacatc accctggcaa atgtcatccg acagctgggc agcctgagta
      361 aatatgccga ggacattttt ggagagctct tcactcaggc aaatactttt gcctctcgag
      421 taagctccct tgctgagagg gtcgaccgcc tacaagttaa agtcactcag ctggatccca
      481 aggaagaaga agtgtcacta caaggaatca acacccgaaa ggccttcaga agctctactg
      541 ttcaagacca gaagcttttt gacagaaact ctctccccat acctgtcttg gaaacataca
      601 acacctgtga tactcctcca cctctcaaca atctgacccc ttacagggac gatgggaaag
      661 aggcactcaa attctacaca gacccttcgt acttctttga tctttggaag gagaagatgc
      721 tgcaggacac caaggatatc atgaaagaga agagaaagca taggaaagag aagaaggata
      781 atccaaatcg aggaaatgta aacccacgta aaatcaagac acgcaaggaa gagtgggaga
      841 aaatgaagat gggtcaggaa tttgtagaat ccaaagaaaa gctggggcct tctgggtatc
      901 cacccacctt ggtgtaccag aatggcagcg ttgggtctgt tgacaacgtg gatgcaagca
      961 actacccacc accaccacag tcagactcca cttctccgcc ttctccttcc ttctctgagg
     1021 acagcttgcc tcccccacca gcagaattca gctacccagc agacagtaac caaagagggt
     1081 ctggcttagc tggacccaaa agatccagtg tggtcagccc aagccatcca ccaccagctc
     1141 ctcctctggg ctctccgcca ggccccaaac ctgggtttgc tccaccacct gcccctccgc
     1201 ctccacctcc gatgatgagc actccacccc caccaccgct tggaggattt gggtctccag
     1261 ggacgccacc accaccttca cccccatctt tcccacctca ccccgatttt gctgcccctc
     1321 cacctcctcc cccaccgcca gcagctgact actcacctct gccaccacct cccttgtccc
     1381 aaccagcagg aggagcacct ccgcctcccc cgccgccccc tcctccgggg ccccctcctc
     1441 cccctttcag tggtgcagat ggccagcctg ctgcaccttc accactttct gacaccacca
     1501 agcccaagtc ctccttgcct cctgtgagcg atgcccgcag cgacttgctt tcagccatcc
     1561 gtcaaggctt tcagctgcgc agggttgagg agcagcggga acaagagaag cgggatgttg
     1621 tgggcaacga cgtggccacc atcttgtcac gtcgcattgc tgtggagtac agcgactcag
     1681 aagatgactc ctctgagttt gatgaggacg agtggtcgga ttaactcttc tgcctgctgc
     1741 ccgcttcctt tttctttcct tcctacctgc ctcctttgat gcctaccccg acagtcccaa
     1801 ggggaaaaaa gggaggaaaa aaagaatctc aaggggccag agccttccct gaagcaacca
     1861 aagatatatc caagtgcttc ctccaaatca acatgtattt cccatctccc cgaggtcagg
     1921 cccatggggc tcctgaggtt cagtagctga gatgttccct cttcccttca agtgactgtt
     1981 gcatattgaa gagaagggaa aaccccaaag cagatccctt tgattggatt taaattggag
     2041 ttggtgcctt cccctaggcg ccgttttctg tggtcttctt ctagaatcct tgccctcagc
     2101 tactttgaat aatgccagcc atcttctggt cctaaagcct gcctggacac agctggcccc
     2161 tttcccatgc gctgagagag cggggcagcc gcatacccag tgcctcccct ttctgccctc
     2221 atcagcaggg tgaggctgcc ttttgctaag ccatctctat gtctggatgc cctttattcc
     2281 aggagccatc aatcccctaa agaaatgtct tacccctctg ctcagaaaca atgcctttct
     2341 ggaagcaggg gtggttccct ccctcccagg gtccctctcc tgaatgtggc gttccacgtt
     2401 ccttaaatgc ccctccctca ccaccaggtg cctccaagca ccacagcccg gttctaacct
     2461 ctaatcctca tgaccaaact agccctgaca cacagggatc tgggcctctt ctggctctcg
     2521 ggagccaagc ttagagactt gtaactgcag gactggaaaa aggcggaact gggttgaatg
     2581 atgctgaagc ctagagatgg gaagtgactt gctcaaggtc acacagttgg atgatgagag
     2641 agctagaccc cagagttcct gattccaagt cacctgtgct ttctgggacc aaatggtggg
     2701 catctactgg agcccgggca gagcagttct tggctctgtg ctactccaga cctcaccaca
     2761 ggtgggggtc ccagtagaag ggctcagggc ctgtgccagg cctatcagtg ctgctcagac
     2821 cctcatggcc tctcttgtaa ttgtttgctc cccctttcct atcaccagcc aagcacctgg
     2881 ccttgagagc tgcccttttg ggggaccaga ggtagtgaga gaaggaagcg ggtaggcagc
     2941 gtgacaggtg ctgctttcaa ttcctctgca actcctcccc cttttatttc cccagtttaa
     3001 gcataggtcc ttccaactgt agaaacttca gtccctcagg ctggcagccg ctgcaggtag
     3061 ctgccccggg gcagggggtg ctggcggctg gcggccatga ggagggtcga aaggcagaag
     3121 gactctgggt cttgtttcca gctcccctcc tcactgcaca gtgacgttcc ctccctcact
     3181 ccccctattt cccagagcta atacacaggt gctattattc agaaaaaaac tggtcaactt
     3241 tggccaacag tgaggtttct tctcttctgc cctaactatt gtgtagcctc ttgtgctgaa
     3301 actggcttct ggcttctccg gcttctccgg ctttccgagc cctgaaacaa agagaaacag
     3361 gatctgtctc tacccagcac agcaaatggt tatagtaatt gccaaagcct tcatcaaccc
     3421 ctctggcttg aggagagggt gtaatcgtgg gtactgccac tgtgtcgtgg ctgaatctcc
     3481 ccctcagcct tctttctgtg aacttggggc gtggggaccg agtctttaga ggccagcgtg
     3541 ccctcctgca ggggctgctc cagagtgtgc cctccttcct ctcctagatc acacatctct
     3601 ggcacagggc tggcgtcagg ccccagtgct gagcgtacca gacggtgtgc accccctcct
     3661 tgcctcccac tgtgcactct ggaagctgaa ggtgctctct tcagaactct aaaatggctg
     3721 tcgaaggtgc ccccggctgc aacccagcag tgaccaaagt ggcaggtgga gggcagtggt
     3781 tctcccaaat aggagtcctg gggcctggct aggccagggt ttgggcctaa tggctttgac
     3841 taaattaccc ccatccccct cttctccgga gaagggggag ccagcgctac tcactatcat
     3901 tcttctctga ccttgaaggg ggcggtgttg gcctggcttc tggaatggac ggagtctgcc
     3961 ttggaaaggg ctgggggcag gaagaggtgg ggagggccac tgcctgcaga aggtaggatt
     4021 agatcattag ctcagtgacc tcctagggtt tcgatatgct gtgttctcat cctacagctg
     4081 gtttggtaat gatctgaaag tcccggagag caacagcaca gctctgcccg atgctctcat
     4141 taaaatctat gcagccaagc tcggcgcttt gtagcagccg gccttgcgaa gcctcctcag
     4201 ctcggggggg gggggggggg gggggggggg ggacggggga cccagtcagc cgagaggccc
     4261 tctgggctct acttatgcat atgtgcaccc aaaaaaaaaa aaaaaaaaaa aaagcttctt
     4321 taaacacaga gccctttaag atgataaagg accctatgca ggtaattgtg ttatctttgg
     4381 aatcctgtaa ttgtagaatg caaagtttag tgattattta aactgggcta aggctggtaa
     4441 gagtatggag caatggcccc taaggactct aagggctgaa gccaaggagc cgcctccctt
     4501 ccctattctg cccagcccag gggacctgcc cccattcctg tggcccaggg gcccagcttc
     4561 cactcggcag tgtcagaagt gagttgtgac tctgccttgg ttgtgagatg agtacattcc
     4621 aagggagcag ccacggggag ggggcaggct cagtgatccc ttggaggctc cgagcagctg
     4681 gcccgagctc cagctcgcct ccaacggaaa ctcaagcgcc ctcagaaatg accctggccg
     4741 ctgtcaccgc agagctgagg cagtgttgtc agggctaatg tgaaatctct tcccgtggcg
     4801 ccgattctcc ggctcggcag cgccatctcg gacagattga ggtctctgtg gctttggtga
     4861 ccctgcgtaa gcatttccac cgtgtcccag ctctgctttc agcctgccgc ccactgcaac
     4921 ccccctcacc tgacctcagg gcttgaggag gggggcagtg accccaaggc caggggcttt
     4981 tgctcaggag agaggtcagg cttcctgggg gctttgagct ctaccggggt tcagctgacc
     5041 tgggaccagg tgtcacccag agatgtgcct caggaagggc tagggaacaa ttttgttact
     5101 gtattaactt tagtcactta actcacttga gaaactaacc aatttttact ttctgtctag
     5161 aatgatgtat gtgtaggaga gtgagccgtc atgctcctga agtgccttgt tttctctgat
     5221 a
//
LOCUS       XM_032607238            5334 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WASP family member 2 (WASF2), transcript
            variant X2, mRNA.
ACCESSION   XM_032607238
VERSION     XM_032607238.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5334
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5334
                     /gene="WASF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741029"
     CDS             341..1837
                     /gene="WASF2"
                     /codon_start=1
                     /product="wiskott-Aldrich syndrome protein family member
                     2"
                     /protein_id="XP_032463129.1"
                     /db_xref="GeneID:116741029"
                     /translation="MPLVTRNIEPRHLCRQTLPSVRSELECMTNITLANVIRQLGSLS
                     KYAEDIFGELFTQANTFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRS
                     STVQDQKLFDRNSLPIPVLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLW
                     KEKMLQDTKDIMKEKRKHRKEKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEK
                     LGPSGYPPTLVYQNGSVGSVDNVDASNYPPPPQSDSTSPPSPSFSEDSLPPPPAEFSY
                     PADSNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPMMSTPP
                     PPPLGGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYSPLPPPPLSQPAGGAPP
                     PPPPPPPPGPPPPPFSGADGQPAAPSPLSDTTKPKSSLPPVSDARSDLLSAIRQGFQL
                     RRVEEQREQEKRDVVGNDVATILSRRIAVEYSDSEDDSSEFDEDEWSD"
     misc_feature    1622..1828
                     /gene="WASF2"
                     /note="Wiskott-Aldrich Syndrome Homology (WASP) region 2
                     (WH2 motif), and similar proteins; Region: WH2; cl41728"
                     /db_xref="CDD:425359"
     misc_feature    order(1646..1651,1655..1663,1667..1675,1688..1699)
                     /gene="WASF2"
                     /note="actin-binding motif [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409196"
ORIGIN      
        1 cccggggcgg ggaatcgcgt aatggcggac gcgggccggt ttagcgcggc tgggggcgta
       61 gcgcgctgag gggggtctgg ctgtgtggca gcgcgcgacg cggccggcga gaacggaccc
      121 cgtgcggaga agggcggccg gccggccagc ctctctgttg ctgagggcga ccgcgcgaga
      181 ccaggagagg tgtgccggag atcccctcgg aggcttggag gggcccgcga gtctgtgaag
      241 ctgcgaaagt gtcccaagct gacctagcgc tgccaccagc tcgtcgtgtg accttgggtt
      301 gtttttcatc attcagaacg ttgcctgaag caggtccacc atgccgttag taacgaggaa
      361 catcgagcca aggcacctgt gccgtcagac gttgcctagc gttagaagcg agctggaatg
      421 catgaccaac atcaccctgg caaatgtcat ccgacagctg ggcagcctga gtaaatatgc
      481 cgaggacatt tttggagagc tcttcactca ggcaaatact tttgcctctc gagtaagctc
      541 ccttgctgag agggtcgacc gcctacaagt taaagtcact cagctggatc ccaaggaaga
      601 agaagtgtca ctacaaggaa tcaacacccg aaaggccttc agaagctcta ctgttcaaga
      661 ccagaagctt tttgacagaa actctctccc catacctgtc ttggaaacat acaacacctg
      721 tgatactcct ccacctctca acaatctgac cccttacagg gacgatggga aagaggcact
      781 caaattctac acagaccctt cgtacttctt tgatctttgg aaggagaaga tgctgcagga
      841 caccaaggat atcatgaaag agaagagaaa gcataggaaa gagaagaagg ataatccaaa
      901 tcgaggaaat gtaaacccac gtaaaatcaa gacacgcaag gaagagtggg agaaaatgaa
      961 gatgggtcag gaatttgtag aatccaaaga aaagctgggg ccttctgggt atccacccac
     1021 cttggtgtac cagaatggca gcgttgggtc tgttgacaac gtggatgcaa gcaactaccc
     1081 accaccacca cagtcagact ccacttctcc gccttctcct tccttctctg aggacagctt
     1141 gcctccccca ccagcagaat tcagctaccc agcagacagt aaccaaagag ggtctggctt
     1201 agctggaccc aaaagatcca gtgtggtcag cccaagccat ccaccaccag ctcctcctct
     1261 gggctctccg ccaggcccca aacctgggtt tgctccacca cctgcccctc cgcctccacc
     1321 tccgatgatg agcactccac ccccaccacc gcttggagga tttgggtctc cagggacgcc
     1381 accaccacct tcacccccat ctttcccacc tcaccccgat tttgctgccc ctccacctcc
     1441 tcccccaccg ccagcagctg actactcacc tctgccacca cctcccttgt cccaaccagc
     1501 aggaggagca cctccgcctc ccccgccgcc ccctcctccg gggccccctc ctcccccttt
     1561 cagtggtgca gatggccagc ctgctgcacc ttcaccactt tctgacacca ccaagcccaa
     1621 gtcctccttg cctcctgtga gcgatgcccg cagcgacttg ctttcagcca tccgtcaagg
     1681 ctttcagctg cgcagggttg aggagcagcg ggaacaagag aagcgggatg ttgtgggcaa
     1741 cgacgtggcc accatcttgt cacgtcgcat tgctgtggag tacagcgact cagaagatga
     1801 ctcctctgag tttgatgagg acgagtggtc ggattaactc ttctgcctgc tgcccgcttc
     1861 ctttttcttt ccttcctacc tgcctccttt gatgcctacc ccgacagtcc caaggggaaa
     1921 aaagggagga aaaaaagaat ctcaaggggc cagagccttc cctgaagcaa ccaaagatat
     1981 atccaagtgc ttcctccaaa tcaacatgta tttcccatct ccccgaggtc aggcccatgg
     2041 ggctcctgag gttcagtagc tgagatgttc cctcttccct tcaagtgact gttgcatatt
     2101 gaagagaagg gaaaacccca aagcagatcc ctttgattgg atttaaattg gagttggtgc
     2161 cttcccctag gcgccgtttt ctgtggtctt cttctagaat ccttgccctc agctactttg
     2221 aataatgcca gccatcttct ggtcctaaag cctgcctgga cacagctggc ccctttccca
     2281 tgcgctgaga gagcggggca gccgcatacc cagtgcctcc cctttctgcc ctcatcagca
     2341 gggtgaggct gccttttgct aagccatctc tatgtctgga tgccctttat tccaggagcc
     2401 atcaatcccc taaagaaatg tcttacccct ctgctcagaa acaatgcctt tctggaagca
     2461 ggggtggttc cctccctccc agggtccctc tcctgaatgt ggcgttccac gttccttaaa
     2521 tgcccctccc tcaccaccag gtgcctccaa gcaccacagc ccggttctaa cctctaatcc
     2581 tcatgaccaa actagccctg acacacaggg atctgggcct cttctggctc tcgggagcca
     2641 agcttagaga cttgtaactg caggactgga aaaaggcgga actgggttga atgatgctga
     2701 agcctagaga tgggaagtga cttgctcaag gtcacacagt tggatgatga gagagctaga
     2761 ccccagagtt cctgattcca agtcacctgt gctttctggg accaaatggt gggcatctac
     2821 tggagcccgg gcagagcagt tcttggctct gtgctactcc agacctcacc acaggtgggg
     2881 gtcccagtag aagggctcag ggcctgtgcc aggcctatca gtgctgctca gaccctcatg
     2941 gcctctcttg taattgtttg ctcccccttt cctatcacca gccaagcacc tggccttgag
     3001 agctgccctt ttgggggacc agaggtagtg agagaaggaa gcgggtaggc agcgtgacag
     3061 gtgctgcttt caattcctct gcaactcctc ccccttttat ttccccagtt taagcatagg
     3121 tccttccaac tgtagaaact tcagtccctc aggctggcag ccgctgcagg tagctgcccc
     3181 ggggcagggg gtgctggcgg ctggcggcca tgaggagggt cgaaaggcag aaggactctg
     3241 ggtcttgttt ccagctcccc tcctcactgc acagtgacgt tccctccctc actcccccta
     3301 tttcccagag ctaatacaca ggtgctatta ttcagaaaaa aactggtcaa ctttggccaa
     3361 cagtgaggtt tcttctcttc tgccctaact attgtgtagc ctcttgtgct gaaactggct
     3421 tctggcttct ccggcttctc cggctttccg agccctgaaa caaagagaaa caggatctgt
     3481 ctctacccag cacagcaaat ggttatagta attgccaaag ccttcatcaa cccctctggc
     3541 ttgaggagag ggtgtaatcg tgggtactgc cactgtgtcg tggctgaatc tccccctcag
     3601 ccttctttct gtgaacttgg ggcgtgggga ccgagtcttt agaggccagc gtgccctcct
     3661 gcaggggctg ctccagagtg tgccctcctt cctctcctag atcacacatc tctggcacag
     3721 ggctggcgtc aggccccagt gctgagcgta ccagacggtg tgcaccccct ccttgcctcc
     3781 cactgtgcac tctggaagct gaaggtgctc tcttcagaac tctaaaatgg ctgtcgaagg
     3841 tgcccccggc tgcaacccag cagtgaccaa agtggcaggt ggagggcagt ggttctccca
     3901 aataggagtc ctggggcctg gctaggccag ggtttgggcc taatggcttt gactaaatta
     3961 cccccatccc cctcttctcc ggagaagggg gagccagcgc tactcactat cattcttctc
     4021 tgaccttgaa gggggcggtg ttggcctggc ttctggaatg gacggagtct gccttggaaa
     4081 gggctggggg caggaagagg tggggagggc cactgcctgc agaaggtagg attagatcat
     4141 tagctcagtg acctcctagg gtttcgatat gctgtgttct catcctacag ctggtttggt
     4201 aatgatctga aagtcccgga gagcaacagc acagctctgc ccgatgctct cattaaaatc
     4261 tatgcagcca agctcggcgc tttgtagcag ccggccttgc gaagcctcct cagctcgggg
     4321 gggggggggg gggggggggg gggggacggg ggacccagtc agccgagagg ccctctgggc
     4381 tctacttatg catatgtgca cccaaaaaaa aaaaaaaaaa aaaaaagctt ctttaaacac
     4441 agagcccttt aagatgataa aggaccctat gcaggtaatt gtgttatctt tggaatcctg
     4501 taattgtaga atgcaaagtt tagtgattat ttaaactggg ctaaggctgg taagagtatg
     4561 gagcaatggc ccctaaggac tctaagggct gaagccaagg agccgcctcc cttccctatt
     4621 ctgcccagcc caggggacct gcccccattc ctgtggccca ggggcccagc ttccactcgg
     4681 cagtgtcaga agtgagttgt gactctgcct tggttgtgag atgagtacat tccaagggag
     4741 cagccacggg gagggggcag gctcagtgat cccttggagg ctccgagcag ctggcccgag
     4801 ctccagctcg cctccaacgg aaactcaagc gccctcagaa atgaccctgg ccgctgtcac
     4861 cgcagagctg aggcagtgtt gtcagggcta atgtgaaatc tcttcccgtg gcgccgattc
     4921 tccggctcgg cagcgccatc tcggacagat tgaggtctct gtggctttgg tgaccctgcg
     4981 taagcatttc caccgtgtcc cagctctgct ttcagcctgc cgcccactgc aacccccctc
     5041 acctgacctc agggcttgag gaggggggca gtgaccccaa ggccaggggc ttttgctcag
     5101 gagagaggtc aggcttcctg ggggctttga gctctaccgg ggttcagctg acctgggacc
     5161 aggtgtcacc cagagatgtg cctcaggaag ggctagggaa caattttgtt actgtattaa
     5221 ctttagtcac ttaactcact tgagaaacta accaattttt actttctgtc tagaatgatg
     5281 tatgtgtagg agagtgagcc gtcatgctcc tgaagtgcct tgttttctct gata
//
LOCUS       XM_032607239            6756 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WASP family member 2 (WASF2), transcript
            variant X3, mRNA.
ACCESSION   XM_032607239
VERSION     XM_032607239.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6756
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6756
                     /gene="WASF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741029"
     CDS             1763..3259
                     /gene="WASF2"
                     /codon_start=1
                     /product="wiskott-Aldrich syndrome protein family member
                     2"
                     /protein_id="XP_032463130.1"
                     /db_xref="GeneID:116741029"
                     /translation="MPLVTRNIEPRHLCRQTLPSVRSELECMTNITLANVIRQLGSLS
                     KYAEDIFGELFTQANTFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRS
                     STVQDQKLFDRNSLPIPVLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLW
                     KEKMLQDTKDIMKEKRKHRKEKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEK
                     LGPSGYPPTLVYQNGSVGSVDNVDASNYPPPPQSDSTSPPSPSFSEDSLPPPPAEFSY
                     PADSNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPMMSTPP
                     PPPLGGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYSPLPPPPLSQPAGGAPP
                     PPPPPPPPGPPPPPFSGADGQPAAPSPLSDTTKPKSSLPPVSDARSDLLSAIRQGFQL
                     RRVEEQREQEKRDVVGNDVATILSRRIAVEYSDSEDDSSEFDEDEWSD"
     misc_feature    3044..3250
                     /gene="WASF2"
                     /note="Wiskott-Aldrich Syndrome Homology (WASP) region 2
                     (WH2 motif), and similar proteins; Region: WH2; cl41728"
                     /db_xref="CDD:425359"
     misc_feature    order(3068..3073,3077..3085,3089..3097,3110..3121)
                     /gene="WASF2"
                     /note="actin-binding motif [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409196"
ORIGIN      
        1 agtcagattc ttaaccactg cgccaccagg gaagacccta gggtttcatc tttaaattta
       61 tgtgaatatt gtattctact acatagtatg tccattgtta aaagtgtttt aaaatatttg
      121 tcaatgaata gaattgattt tacaggagga tttgcctgag gtccgtggaa ctaaaaataa
      181 ctaccttttt tcttagccct gtagtggaca ttttatacat gttacattat ttaatgtctc
      241 taggaaaatt gcccaagata acacagctag taaggtgtca agactcaggg cactaagaga
      301 agtatgtctc aactccacaa cttgaagctg agttgagtca agagccttgg aagtctttgc
      361 cccatttcta agtttgtctt cactggaata gagggttttt ttttccttgg tcaaattagt
      421 attgtggttc aaatcatgcg taattccata cttctttggc ataatacaac taaccttgat
      481 tatccaaaag aaaaatgagc agtgatgcag gtaattccat ataataggga atcttgtctt
      541 tctctggtgg ctctgaaaca tataaaatta cttttttctt agtagcagat tcacttttct
      601 aattgttttg tcttgataga tattgacata ttgtaatttc ctgagtactc tagctggttg
      661 tgggagctgg ctttttttgg caagaggtag ctatcttgct attgaaaact tggttcctcc
      721 accccagaag acatagagtt gactccattt gtgtccactt acccaaggta cttgggaaag
      781 cataaatgct aaagtaccaa ggtgtcagag tggcttcccc agctccaccc ctaatctgac
      841 atttacctag ccatctggaa tccagtttcc attaggtgtc caaagagaat gtctggaatg
      901 ccctgtcagt ggccattcag cgcagaattt caaggggatc tggctcctgt agctcctcta
      961 agaagctaga acaagttctg aaataattgc taatggaggg agccatagtg gctattttca
     1021 ctcatctctg gctgtacccc tgaatttctg gttcttccta aaagcttgaa gtttgggagt
     1081 ctaagggcat ccagaggatg cagagtcctg tgaggttctt ttatttgtaa caccttgcct
     1141 cctttgctgt tctaaactct cttttcagta tgagttaata aagcttgcat gttagtaccc
     1201 agtacccttt agattatgta aaagaggaga agaggtagac tgggagggaa agtccagagt
     1261 ttggattaga aaacctgttt agtcaaaggg gaacttagct gaggaacaga atgaaaatta
     1321 tttccttaga cagtagacaa acattcagga aacacctctg caccccaaag ataggaacag
     1381 ctgccacaca gtgactatta aagggaggtt ctaagttatg agcaaacagc tgattctctt
     1441 ggttcttagg ctgttgctgt tggtgacagg aaatcttgtt tcccaagctg ctggcttcct
     1501 gttttatttt tactcttagc agatcagaat gtccataaca aggagcagtc tgttccaaag
     1561 ggttctactc cctctttgag cctgaagggc tttttttttt ttcttttggt cagacaatat
     1621 gttggttcac ttttaagatc tatgatgttt agcttgattt aagcatttcg tattcacagt
     1681 caactttttt ggtgatgagc tggtgttttg agatttgatg ttgtttttca tcattcagaa
     1741 cgttgcctga agcaggtcca ccatgccgtt agtaacgagg aacatcgagc caaggcacct
     1801 gtgccgtcag acgttgccta gcgttagaag cgagctggaa tgcatgacca acatcaccct
     1861 ggcaaatgtc atccgacagc tgggcagcct gagtaaatat gccgaggaca tttttggaga
     1921 gctcttcact caggcaaata cttttgcctc tcgagtaagc tcccttgctg agagggtcga
     1981 ccgcctacaa gttaaagtca ctcagctgga tcccaaggaa gaagaagtgt cactacaagg
     2041 aatcaacacc cgaaaggcct tcagaagctc tactgttcaa gaccagaagc tttttgacag
     2101 aaactctctc cccatacctg tcttggaaac atacaacacc tgtgatactc ctccacctct
     2161 caacaatctg accccttaca gggacgatgg gaaagaggca ctcaaattct acacagaccc
     2221 ttcgtacttc tttgatcttt ggaaggagaa gatgctgcag gacaccaagg atatcatgaa
     2281 agagaagaga aagcatagga aagagaagaa ggataatcca aatcgaggaa atgtaaaccc
     2341 acgtaaaatc aagacacgca aggaagagtg ggagaaaatg aagatgggtc aggaatttgt
     2401 agaatccaaa gaaaagctgg ggccttctgg gtatccaccc accttggtgt accagaatgg
     2461 cagcgttggg tctgttgaca acgtggatgc aagcaactac ccaccaccac cacagtcaga
     2521 ctccacttct ccgccttctc cttccttctc tgaggacagc ttgcctcccc caccagcaga
     2581 attcagctac ccagcagaca gtaaccaaag agggtctggc ttagctggac ccaaaagatc
     2641 cagtgtggtc agcccaagcc atccaccacc agctcctcct ctgggctctc cgccaggccc
     2701 caaacctggg tttgctccac cacctgcccc tccgcctcca cctccgatga tgagcactcc
     2761 acccccacca ccgcttggag gatttgggtc tccagggacg ccaccaccac cttcaccccc
     2821 atctttccca cctcaccccg attttgctgc ccctccacct cctcccccac cgccagcagc
     2881 tgactactca cctctgccac cacctccctt gtcccaacca gcaggaggag cacctccgcc
     2941 tcccccgccg ccccctcctc cggggccccc tcctccccct ttcagtggtg cagatggcca
     3001 gcctgctgca ccttcaccac tttctgacac caccaagccc aagtcctcct tgcctcctgt
     3061 gagcgatgcc cgcagcgact tgctttcagc catccgtcaa ggctttcagc tgcgcagggt
     3121 tgaggagcag cgggaacaag agaagcggga tgttgtgggc aacgacgtgg ccaccatctt
     3181 gtcacgtcgc attgctgtgg agtacagcga ctcagaagat gactcctctg agtttgatga
     3241 ggacgagtgg tcggattaac tcttctgcct gctgcccgct tcctttttct ttccttccta
     3301 cctgcctcct ttgatgccta ccccgacagt cccaagggga aaaaagggag gaaaaaaaga
     3361 atctcaaggg gccagagcct tccctgaagc aaccaaagat atatccaagt gcttcctcca
     3421 aatcaacatg tatttcccat ctccccgagg tcaggcccat ggggctcctg aggttcagta
     3481 gctgagatgt tccctcttcc cttcaagtga ctgttgcata ttgaagagaa gggaaaaccc
     3541 caaagcagat ccctttgatt ggatttaaat tggagttggt gccttcccct aggcgccgtt
     3601 ttctgtggtc ttcttctaga atccttgccc tcagctactt tgaataatgc cagccatctt
     3661 ctggtcctaa agcctgcctg gacacagctg gcccctttcc catgcgctga gagagcgggg
     3721 cagccgcata cccagtgcct cccctttctg ccctcatcag cagggtgagg ctgccttttg
     3781 ctaagccatc tctatgtctg gatgcccttt attccaggag ccatcaatcc cctaaagaaa
     3841 tgtcttaccc ctctgctcag aaacaatgcc tttctggaag caggggtggt tccctccctc
     3901 ccagggtccc tctcctgaat gtggcgttcc acgttcctta aatgcccctc cctcaccacc
     3961 aggtgcctcc aagcaccaca gcccggttct aacctctaat cctcatgacc aaactagccc
     4021 tgacacacag ggatctgggc ctcttctggc tctcgggagc caagcttaga gacttgtaac
     4081 tgcaggactg gaaaaaggcg gaactgggtt gaatgatgct gaagcctaga gatgggaagt
     4141 gacttgctca aggtcacaca gttggatgat gagagagcta gaccccagag ttcctgattc
     4201 caagtcacct gtgctttctg ggaccaaatg gtgggcatct actggagccc gggcagagca
     4261 gttcttggct ctgtgctact ccagacctca ccacaggtgg gggtcccagt agaagggctc
     4321 agggcctgtg ccaggcctat cagtgctgct cagaccctca tggcctctct tgtaattgtt
     4381 tgctccccct ttcctatcac cagccaagca cctggccttg agagctgccc ttttggggga
     4441 ccagaggtag tgagagaagg aagcgggtag gcagcgtgac aggtgctgct ttcaattcct
     4501 ctgcaactcc tccccctttt atttccccag tttaagcata ggtccttcca actgtagaaa
     4561 cttcagtccc tcaggctggc agccgctgca ggtagctgcc ccggggcagg gggtgctggc
     4621 ggctggcggc catgaggagg gtcgaaaggc agaaggactc tgggtcttgt ttccagctcc
     4681 cctcctcact gcacagtgac gttccctccc tcactccccc tatttcccag agctaataca
     4741 caggtgctat tattcagaaa aaaactggtc aactttggcc aacagtgagg tttcttctct
     4801 tctgccctaa ctattgtgta gcctcttgtg ctgaaactgg cttctggctt ctccggcttc
     4861 tccggctttc cgagccctga aacaaagaga aacaggatct gtctctaccc agcacagcaa
     4921 atggttatag taattgccaa agccttcatc aacccctctg gcttgaggag agggtgtaat
     4981 cgtgggtact gccactgtgt cgtggctgaa tctccccctc agccttcttt ctgtgaactt
     5041 ggggcgtggg gaccgagtct ttagaggcca gcgtgccctc ctgcaggggc tgctccagag
     5101 tgtgccctcc ttcctctcct agatcacaca tctctggcac agggctggcg tcaggcccca
     5161 gtgctgagcg taccagacgg tgtgcacccc ctccttgcct cccactgtgc actctggaag
     5221 ctgaaggtgc tctcttcaga actctaaaat ggctgtcgaa ggtgcccccg gctgcaaccc
     5281 agcagtgacc aaagtggcag gtggagggca gtggttctcc caaataggag tcctggggcc
     5341 tggctaggcc agggtttggg cctaatggct ttgactaaat tacccccatc cccctcttct
     5401 ccggagaagg gggagccagc gctactcact atcattcttc tctgaccttg aagggggcgg
     5461 tgttggcctg gcttctggaa tggacggagt ctgccttgga aagggctggg ggcaggaaga
     5521 ggtggggagg gccactgcct gcagaaggta ggattagatc attagctcag tgacctccta
     5581 gggtttcgat atgctgtgtt ctcatcctac agctggtttg gtaatgatct gaaagtcccg
     5641 gagagcaaca gcacagctct gcccgatgct ctcattaaaa tctatgcagc caagctcggc
     5701 gctttgtagc agccggcctt gcgaagcctc ctcagctcgg gggggggggg gggggggggg
     5761 gggggggacg ggggacccag tcagccgaga ggccctctgg gctctactta tgcatatgtg
     5821 cacccaaaaa aaaaaaaaaa aaaaaaaagc ttctttaaac acagagccct ttaagatgat
     5881 aaaggaccct atgcaggtaa ttgtgttatc tttggaatcc tgtaattgta gaatgcaaag
     5941 tttagtgatt atttaaactg ggctaaggct ggtaagagta tggagcaatg gcccctaagg
     6001 actctaaggg ctgaagccaa ggagccgcct cccttcccta ttctgcccag cccaggggac
     6061 ctgcccccat tcctgtggcc caggggccca gcttccactc ggcagtgtca gaagtgagtt
     6121 gtgactctgc cttggttgtg agatgagtac attccaaggg agcagccacg gggagggggc
     6181 aggctcagtg atcccttgga ggctccgagc agctggcccg agctccagct cgcctccaac
     6241 ggaaactcaa gcgccctcag aaatgaccct ggccgctgtc accgcagagc tgaggcagtg
     6301 ttgtcagggc taatgtgaaa tctcttcccg tggcgccgat tctccggctc ggcagcgcca
     6361 tctcggacag attgaggtct ctgtggcttt ggtgaccctg cgtaagcatt tccaccgtgt
     6421 cccagctctg ctttcagcct gccgcccact gcaacccccc tcacctgacc tcagggcttg
     6481 aggagggggg cagtgacccc aaggccaggg gcttttgctc aggagagagg tcaggcttcc
     6541 tgggggcttt gagctctacc ggggttcagc tgacctggga ccaggtgtca cccagagatg
     6601 tgcctcagga agggctaggg aacaattttg ttactgtatt aactttagtc acttaactca
     6661 cttgagaaac taaccaattt ttactttctg tctagaatga tgtatgtgta ggagagtgag
     6721 ccgtcatgct cctgaagtgc cttgttttct ctgata
//
LOCUS       XM_032607240            5319 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WASP family member 2 (WASF2), transcript
            variant X4, mRNA.
ACCESSION   XM_032607240
VERSION     XM_032607240.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5319
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5319
                     /gene="WASF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741029"
     CDS             326..1822
                     /gene="WASF2"
                     /codon_start=1
                     /product="wiskott-Aldrich syndrome protein family member
                     2"
                     /protein_id="XP_032463131.1"
                     /db_xref="GeneID:116741029"
                     /translation="MPLVTRNIEPRHLCRQTLPSVRSELECMTNITLANVIRQLGSLS
                     KYAEDIFGELFTQANTFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRS
                     STVQDQKLFDRNSLPIPVLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLW
                     KEKMLQDTKDIMKEKRKHRKEKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEK
                     LGPSGYPPTLVYQNGSVGSVDNVDASNYPPPPQSDSTSPPSPSFSEDSLPPPPAEFSY
                     PADSNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPMMSTPP
                     PPPLGGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYSPLPPPPLSQPAGGAPP
                     PPPPPPPPGPPPPPFSGADGQPAAPSPLSDTTKPKSSLPPVSDARSDLLSAIRQGFQL
                     RRVEEQREQEKRDVVGNDVATILSRRIAVEYSDSEDDSSEFDEDEWSD"
     misc_feature    1607..1813
                     /gene="WASF2"
                     /note="Wiskott-Aldrich Syndrome Homology (WASP) region 2
                     (WH2 motif), and similar proteins; Region: WH2; cl41728"
                     /db_xref="CDD:425359"
     misc_feature    order(1631..1636,1640..1648,1652..1660,1673..1684)
                     /gene="WASF2"
                     /note="actin-binding motif [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409196"
ORIGIN      
        1 cccggggcgg ggaatcgcgt aatggcggac gcgggccggt ttagcgcggc tgggggcgta
       61 gcgcgctgag gggggtctgg ctgtgtggca gcgcgcgacg cggccggcga gaacggaccc
      121 cgtgcggaga agggcggccg gccggccagc ctctctgttg ctgagggcga ccgcgcgaga
      181 ccagccgcac ctcgtggctt gcaggatctt agttgcccga ccagggattg aacccgtgcc
      241 ccctgcattg gaagcttgga ttcttaacca ctgcactgcc aggttgtttt tcatcattca
      301 gaacgttgcc tgaagcaggt ccaccatgcc gttagtaacg aggaacatcg agccaaggca
      361 cctgtgccgt cagacgttgc ctagcgttag aagcgagctg gaatgcatga ccaacatcac
      421 cctggcaaat gtcatccgac agctgggcag cctgagtaaa tatgccgagg acatttttgg
      481 agagctcttc actcaggcaa atacttttgc ctctcgagta agctcccttg ctgagagggt
      541 cgaccgccta caagttaaag tcactcagct ggatcccaag gaagaagaag tgtcactaca
      601 aggaatcaac acccgaaagg ccttcagaag ctctactgtt caagaccaga agctttttga
      661 cagaaactct ctccccatac ctgtcttgga aacatacaac acctgtgata ctcctccacc
      721 tctcaacaat ctgacccctt acagggacga tgggaaagag gcactcaaat tctacacaga
      781 cccttcgtac ttctttgatc tttggaagga gaagatgctg caggacacca aggatatcat
      841 gaaagagaag agaaagcata ggaaagagaa gaaggataat ccaaatcgag gaaatgtaaa
      901 cccacgtaaa atcaagacac gcaaggaaga gtgggagaaa atgaagatgg gtcaggaatt
      961 tgtagaatcc aaagaaaagc tggggccttc tgggtatcca cccaccttgg tgtaccagaa
     1021 tggcagcgtt gggtctgttg acaacgtgga tgcaagcaac tacccaccac caccacagtc
     1081 agactccact tctccgcctt ctccttcctt ctctgaggac agcttgcctc ccccaccagc
     1141 agaattcagc tacccagcag acagtaacca aagagggtct ggcttagctg gacccaaaag
     1201 atccagtgtg gtcagcccaa gccatccacc accagctcct cctctgggct ctccgccagg
     1261 ccccaaacct gggtttgctc caccacctgc ccctccgcct ccacctccga tgatgagcac
     1321 tccaccccca ccaccgcttg gaggatttgg gtctccaggg acgccaccac caccttcacc
     1381 cccatctttc ccacctcacc ccgattttgc tgcccctcca cctcctcccc caccgccagc
     1441 agctgactac tcacctctgc caccacctcc cttgtcccaa ccagcaggag gagcacctcc
     1501 gcctcccccg ccgccccctc ctccggggcc ccctcctccc cctttcagtg gtgcagatgg
     1561 ccagcctgct gcaccttcac cactttctga caccaccaag cccaagtcct ccttgcctcc
     1621 tgtgagcgat gcccgcagcg acttgctttc agccatccgt caaggctttc agctgcgcag
     1681 ggttgaggag cagcgggaac aagagaagcg ggatgttgtg ggcaacgacg tggccaccat
     1741 cttgtcacgt cgcattgctg tggagtacag cgactcagaa gatgactcct ctgagtttga
     1801 tgaggacgag tggtcggatt aactcttctg cctgctgccc gcttcctttt tctttccttc
     1861 ctacctgcct cctttgatgc ctaccccgac agtcccaagg ggaaaaaagg gaggaaaaaa
     1921 agaatctcaa ggggccagag ccttccctga agcaaccaaa gatatatcca agtgcttcct
     1981 ccaaatcaac atgtatttcc catctccccg aggtcaggcc catggggctc ctgaggttca
     2041 gtagctgaga tgttccctct tcccttcaag tgactgttgc atattgaaga gaagggaaaa
     2101 ccccaaagca gatccctttg attggattta aattggagtt ggtgccttcc cctaggcgcc
     2161 gttttctgtg gtcttcttct agaatccttg ccctcagcta ctttgaataa tgccagccat
     2221 cttctggtcc taaagcctgc ctggacacag ctggcccctt tcccatgcgc tgagagagcg
     2281 gggcagccgc atacccagtg cctccccttt ctgccctcat cagcagggtg aggctgcctt
     2341 ttgctaagcc atctctatgt ctggatgccc tttattccag gagccatcaa tcccctaaag
     2401 aaatgtctta cccctctgct cagaaacaat gcctttctgg aagcaggggt ggttccctcc
     2461 ctcccagggt ccctctcctg aatgtggcgt tccacgttcc ttaaatgccc ctccctcacc
     2521 accaggtgcc tccaagcacc acagcccggt tctaacctct aatcctcatg accaaactag
     2581 ccctgacaca cagggatctg ggcctcttct ggctctcggg agccaagctt agagacttgt
     2641 aactgcagga ctggaaaaag gcggaactgg gttgaatgat gctgaagcct agagatggga
     2701 agtgacttgc tcaaggtcac acagttggat gatgagagag ctagacccca gagttcctga
     2761 ttccaagtca cctgtgcttt ctgggaccaa atggtgggca tctactggag cccgggcaga
     2821 gcagttcttg gctctgtgct actccagacc tcaccacagg tgggggtccc agtagaaggg
     2881 ctcagggcct gtgccaggcc tatcagtgct gctcagaccc tcatggcctc tcttgtaatt
     2941 gtttgctccc cctttcctat caccagccaa gcacctggcc ttgagagctg cccttttggg
     3001 ggaccagagg tagtgagaga aggaagcggg taggcagcgt gacaggtgct gctttcaatt
     3061 cctctgcaac tcctccccct tttatttccc cagtttaagc ataggtcctt ccaactgtag
     3121 aaacttcagt ccctcaggct ggcagccgct gcaggtagct gccccggggc agggggtgct
     3181 ggcggctggc ggccatgagg agggtcgaaa ggcagaagga ctctgggtct tgtttccagc
     3241 tcccctcctc actgcacagt gacgttccct ccctcactcc ccctatttcc cagagctaat
     3301 acacaggtgc tattattcag aaaaaaactg gtcaactttg gccaacagtg aggtttcttc
     3361 tcttctgccc taactattgt gtagcctctt gtgctgaaac tggcttctgg cttctccggc
     3421 ttctccggct ttccgagccc tgaaacaaag agaaacagga tctgtctcta cccagcacag
     3481 caaatggtta tagtaattgc caaagccttc atcaacccct ctggcttgag gagagggtgt
     3541 aatcgtgggt actgccactg tgtcgtggct gaatctcccc ctcagccttc tttctgtgaa
     3601 cttggggcgt ggggaccgag tctttagagg ccagcgtgcc ctcctgcagg ggctgctcca
     3661 gagtgtgccc tccttcctct cctagatcac acatctctgg cacagggctg gcgtcaggcc
     3721 ccagtgctga gcgtaccaga cggtgtgcac cccctccttg cctcccactg tgcactctgg
     3781 aagctgaagg tgctctcttc agaactctaa aatggctgtc gaaggtgccc ccggctgcaa
     3841 cccagcagtg accaaagtgg caggtggagg gcagtggttc tcccaaatag gagtcctggg
     3901 gcctggctag gccagggttt gggcctaatg gctttgacta aattaccccc atccccctct
     3961 tctccggaga agggggagcc agcgctactc actatcattc ttctctgacc ttgaaggggg
     4021 cggtgttggc ctggcttctg gaatggacgg agtctgcctt ggaaagggct gggggcagga
     4081 agaggtgggg agggccactg cctgcagaag gtaggattag atcattagct cagtgacctc
     4141 ctagggtttc gatatgctgt gttctcatcc tacagctggt ttggtaatga tctgaaagtc
     4201 ccggagagca acagcacagc tctgcccgat gctctcatta aaatctatgc agccaagctc
     4261 ggcgctttgt agcagccggc cttgcgaagc ctcctcagct cggggggggg gggggggggg
     4321 gggggggggg acgggggacc cagtcagccg agaggccctc tgggctctac ttatgcatat
     4381 gtgcacccaa aaaaaaaaaa aaaaaaaaaa agcttcttta aacacagagc cctttaagat
     4441 gataaaggac cctatgcagg taattgtgtt atctttggaa tcctgtaatt gtagaatgca
     4501 aagtttagtg attatttaaa ctgggctaag gctggtaaga gtatggagca atggccccta
     4561 aggactctaa gggctgaagc caaggagccg cctcccttcc ctattctgcc cagcccaggg
     4621 gacctgcccc cattcctgtg gcccaggggc ccagcttcca ctcggcagtg tcagaagtga
     4681 gttgtgactc tgccttggtt gtgagatgag tacattccaa gggagcagcc acggggaggg
     4741 ggcaggctca gtgatccctt ggaggctccg agcagctggc ccgagctcca gctcgcctcc
     4801 aacggaaact caagcgccct cagaaatgac cctggccgct gtcaccgcag agctgaggca
     4861 gtgttgtcag ggctaatgtg aaatctcttc ccgtggcgcc gattctccgg ctcggcagcg
     4921 ccatctcgga cagattgagg tctctgtggc tttggtgacc ctgcgtaagc atttccaccg
     4981 tgtcccagct ctgctttcag cctgccgccc actgcaaccc ccctcacctg acctcagggc
     5041 ttgaggaggg gggcagtgac cccaaggcca ggggcttttg ctcaggagag aggtcaggct
     5101 tcctgggggc tttgagctct accggggttc agctgacctg ggaccaggtg tcacccagag
     5161 atgtgcctca ggaagggcta gggaacaatt ttgttactgt attaacttta gtcacttaac
     5221 tcacttgaga aactaaccaa tttttacttt ctgtctagaa tgatgtatgt gtaggagagt
     5281 gagccgtcat gctcctgaag tgccttgttt tctctgata
//
LOCUS       XM_032607241            2115 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein-coupled receptor 3 (GPR3),
            transcript variant X1, mRNA.
ACCESSION   XM_032607241
VERSION     XM_032607241.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2115
                     /gene="GPR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 17
                     Proteins, and 72% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116741076"
     CDS             116..1108
                     /gene="GPR3"
                     /codon_start=1
                     /product="G-protein coupled receptor 3"
                     /protein_id="XP_032463132.1"
                     /db_xref="GeneID:116741076"
                     /translation="MMWGAGSPLAWLSAGPGNMNMSSVGSTEGPTGPAMPLPSPRAWD
                     VVLCISGTLVSCENALVVAIIVGTPAFHAPMFLLVGSLAVADLLAGLGLVMHFAAVFC
                     IGSAEMSLVLVGMLAMAFTASIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALV
                     WGCALGLGLLPVLAWNCLDARATCGVVYPLSKNHLVVLAVAFFMVFGIMLQLYAQICR
                     IVCRHAQQIALQRHLLPASHYVATRKGIATLAVVLGAFAACWLPFTVYCLLGDAHSPP
                     LYTYLTLLPATYNSMINPIIYAFRNQDVQKVLWAVCCCCSSSKIPFRSRSPSDV"
     misc_feature    236..1039
                     /gene="GPR3"
                     /note="G protein-coupled receptor 3, member of the class A
                     family of seven-transmembrane G protein-coupled receptors;
                     Region: 7tmA_GPR3; cd15963"
                     /db_xref="CDD:320629"
     misc_feature    239..319
                     /gene="GPR3"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320629"
     misc_feature    338..415
                     /gene="GPR3"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320629"
     misc_feature    order(401..403,449..454,461..466,473..475,707..709,
                     893..895,914..916,953..955,962..964)
                     /gene="GPR3"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:320629"
     misc_feature    440..532
                     /gene="GPR3"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320629"
     misc_feature    566..628
                     /gene="GPR3"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320629"
     misc_feature    683..772
                     /gene="GPR3"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320629"
     misc_feature    833..925
                     /gene="GPR3"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320629"
     misc_feature    941..1018
                     /gene="GPR3"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320629"
ORIGIN      
        1 cacgtcgctt ctcccgtggc cgtgggggct tctcggggtc cgcatacacc ctgcgcagcc
       61 tggacccgag cggagcctcc ccggggcccg gccgcgcccg gtcccgagag gtaccatgat
      121 gtggggtgca ggcagccccc tggcctggct ctctgctggc ccaggaaaca tgaacatgag
      181 cagcgtgggc tcaacagagg ggcccacagg cccagccatg ccactgccct cacctagggc
      241 ctgggacgta gtgctgtgca tctcaggtac cctagtgtcc tgtgagaacg cgctggtggt
      301 ggccatcatc gtgggcactc ctgccttcca cgcccccatg ttcctgctgg tgggcagcct
      361 ggctgtggca gacctgctgg caggcctggg tctagtcatg cactttgctg ctgtcttctg
      421 cattggctcg gcagagatga gcctggtgct ggtcggcatg ctggccatgg cctttactgc
      481 cagcattggc agcctactgg ccatcaccgt tgatcgctac ctttctctgt acaatgccct
      541 cacctactac tcagagacga cagtgacgcg gacctatgtg atgctggccc tagtgtgggg
      601 atgcgcattg ggcctggggc tgctgcctgt gctggcctgg aactgcctgg atgcccgggc
      661 cacgtgtggc gtggtatatc cactctccaa gaaccatctg gtggtcctgg ccgttgcttt
      721 cttcatggtg tttggcatca tgctgcagct ctatgcccag atctgtcgca tcgtctgccg
      781 ccatgcccag cagattgccc tccagcggca cctgctgcct gcctcccact acgtggccac
      841 ccgaaagggc attgccacct tggccgtggt gcttggcgcc tttgccgcct gctggctgcc
      901 cttcaccgtc tactgcctgt tgggcgatgc ccactcccca cccctctaca cctatctcac
      961 cctgctccct gccacctaca actccatgat caaccccatc atttatgcct tccgcaacca
     1021 ggatgtgcag aaggtgctgt gggctgtctg ctgctgctgt tcctcttcca agatcccctt
     1081 ccgatcccgt tcccccagtg atgtctagtc gcatcctggt gacccttcag ccctgatcac
     1141 tacagaattc cagagtgtta ggtcctccag ggctttgttc caaccctcca gctctgcacc
     1201 ccaagaccca gctggttctg gagttctagg actttgggtg tttcacagga ttctgttcag
     1261 atccctgcag ggcccagccg gctccatggt tgtagaatgt tcaggtggtc agggttccac
     1321 tcagaaatgt cgcacagccc agctggcttg gagttccagt acgctgctgg gtgtttcaca
     1381 gtgccattcc aagtccctga tcttccccct cccttgacct tgaccatgtc gctttacttt
     1441 tgagtttctg aactaaagag tcagagaggt tagttagtct gttgatagat aagacaaaga
     1501 tttatctgta tatatgtgca catacaaaga gagtatctat tattatttat ttatttatgg
     1561 gtgttaacgg gaaaaaaaga gacccacacc ttgaaatcca ggccatacca gggtactccc
     1621 agtccccaac acctgcattt ctgacctcag ttcctagagg ggggaaaggg agagagagaa
     1681 accacgtatt ttgttattat ttttgcttgt tttttatcaa agagatcata gaaaccagag
     1741 ccttctccca gggcccgcca ccctcgggtt tgccggggga acacaccagc ctctggtttt
     1801 ttattttttt aagaaaccat cacctgagaa accgagaatt cctctgcgct gggggccggc
     1861 tgccctctgg tggccgtttt ggggaaactg cagcccggtc ggcagccggg accaggccga
     1921 gcaaccccag ctccactcca gcctggcgtc cagcgccaca gccagagctt agcggccagg
     1981 cctcaccctg cggtgcccta gaggaggcaa gggtgcgagc caacaccaga cccctctgcc
     2041 aactggggta tggtccccag tgcgatccct attcctgtcc ctgacccaac cctcaataaa
     2101 aaatgatttt gtgat
//
LOCUS       XM_032607243            8958 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein-coupled receptor 3 (GPR3),
            transcript variant X2, mRNA.
ACCESSION   XM_032607243
VERSION     XM_032607243.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8958
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8958
                     /gene="GPR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 17 Proteins, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741076"
     CDS             45..1037
                     /gene="GPR3"
                     /codon_start=1
                     /product="G-protein coupled receptor 3"
                     /protein_id="XP_032463134.1"
                     /db_xref="GeneID:116741076"
                     /translation="MMWGAGSPLAWLSAGPGNMNMSSVGSTEGPTGPAMPLPSPRAWD
                     VVLCISGTLVSCENALVVAIIVGTPAFHAPMFLLVGSLAVADLLAGLGLVMHFAAVFC
                     IGSAEMSLVLVGMLAMAFTASIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALV
                     WGCALGLGLLPVLAWNCLDARATCGVVYPLSKNHLVVLAVAFFMVFGIMLQLYAQICR
                     IVCRHAQQIALQRHLLPASHYVATRKGIATLAVVLGAFAACWLPFTVYCLLGDAHSPP
                     LYTYLTLLPATYNSMINPIIYAFRNQDVQKVLWAVCCCCSSSKIPFRSRSPSDV"
     misc_feature    165..968
                     /gene="GPR3"
                     /note="G protein-coupled receptor 3, member of the class A
                     family of seven-transmembrane G protein-coupled receptors;
                     Region: 7tmA_GPR3; cd15963"
                     /db_xref="CDD:320629"
     misc_feature    168..248
                     /gene="GPR3"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320629"
     misc_feature    267..344
                     /gene="GPR3"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320629"
     misc_feature    order(330..332,378..383,390..395,402..404,636..638,
                     822..824,843..845,882..884,891..893)
                     /gene="GPR3"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:320629"
     misc_feature    369..461
                     /gene="GPR3"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320629"
     misc_feature    495..557
                     /gene="GPR3"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320629"
     misc_feature    612..701
                     /gene="GPR3"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320629"
     misc_feature    762..854
                     /gene="GPR3"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320629"
     misc_feature    870..947
                     /gene="GPR3"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320629"
ORIGIN      
        1 ggggcgacaa ggcgttggga ctcagccagg tatcctgagg taccatgatg tggggtgcag
       61 gcagccccct ggcctggctc tctgctggcc caggaaacat gaacatgagc agcgtgggct
      121 caacagaggg gcccacaggc ccagccatgc cactgccctc acctagggcc tgggacgtag
      181 tgctgtgcat ctcaggtacc ctagtgtcct gtgagaacgc gctggtggtg gccatcatcg
      241 tgggcactcc tgccttccac gcccccatgt tcctgctggt gggcagcctg gctgtggcag
      301 acctgctggc aggcctgggt ctagtcatgc actttgctgc tgtcttctgc attggctcgg
      361 cagagatgag cctggtgctg gtcggcatgc tggccatggc ctttactgcc agcattggca
      421 gcctactggc catcaccgtt gatcgctacc tttctctgta caatgccctc acctactact
      481 cagagacgac agtgacgcgg acctatgtga tgctggccct agtgtgggga tgcgcattgg
      541 gcctggggct gctgcctgtg ctggcctgga actgcctgga tgcccgggcc acgtgtggcg
      601 tggtatatcc actctccaag aaccatctgg tggtcctggc cgttgctttc ttcatggtgt
      661 ttggcatcat gctgcagctc tatgcccaga tctgtcgcat cgtctgccgc catgcccagc
      721 agattgccct ccagcggcac ctgctgcctg cctcccacta cgtggccacc cgaaagggca
      781 ttgccacctt ggccgtggtg cttggcgcct ttgccgcctg ctggctgccc ttcaccgtct
      841 actgcctgtt gggcgatgcc cactccccac ccctctacac ctatctcacc ctgctccctg
      901 ccacctacaa ctccatgatc aaccccatca tttatgcctt ccgcaaccag gatgtgcaga
      961 aggtgctgtg ggctgtctgc tgctgctgtt cctcttccaa gatccccttc cgatcccgtt
     1021 cccccagtga tgtctagtcg catcctggtg acccttcagc cctgatcact acagaattcc
     1081 agagtgttag gtcctccagg gctttgttcc aaccctccag ctctgcaccc caagacccag
     1141 ctggttctgg agttctagga ctttgggtgt ttcacaggat tctgttcaga tccctgcagg
     1201 gcccagccgg ctccatggtt gtagaatgtt caggtggtca gggttccact cagaaatgtc
     1261 gcacagccca gctggcttgg agttccagta cgctgctggg tgtttcacag tgccattcca
     1321 agtccctgat cttccccctc ccttgacctt gaccatgtcg ctttactttt gagtttctga
     1381 actaaagagt cagagaggtt agttagtctg ttgatagata agacaaagat ttatctgtat
     1441 atatgtgcac atacaaagag agtatctatt attatttatt tatttatggg tgttaacggg
     1501 aaaaaaagag acccacacct tgaaatccag gccataccag ggtactccca gtccccaaca
     1561 cctgcatttc tgacctcagt tcctagaggg gggaaaggga gagagagaaa ccacgtattt
     1621 tgttattatt tttgcttgtt ttttatcaaa gagatcatag aaaccagagc cttctcccag
     1681 ggcccgccac cctcgggttt gccgggggaa cacaccagcc tctggttttt tattttttta
     1741 agaaaccatc acctgagaaa ccgagaattc ctctgcgctg ggggccggct gccctctggt
     1801 ggccgttttg gggaaactgc agcccggtcg gcagccggga ccaggccgag caaccccagc
     1861 tccactccag cctggcgtcc agcgccacag ccagagctta gcggccaggc ctcaccctgc
     1921 ggtgccctag aggaggcaag ggtgcgagcc aacaccagac ccctctgcca actggggtat
     1981 ggtccccagt gcgatcccta ttcctgtccc tgacccaacc ctcaataaaa aatgattttg
     2041 tgataaattt gtctgtgtgt ggagggggtg gagtggggcc tgatggggga cagcctggaa
     2101 tgggaggatt atgccaggcc tgggggcctg tggggtatgt gaggagctgg agacccaggt
     2161 ggaatgtggc cggcaggtga cacctcccac cccaggatgc caatctgatg ggtctccctg
     2221 ctcagacaca ggcaccgcca ggcaagaacc ccacctcccc ctggggactg gaacccctgt
     2281 tgctagaccc ttttggggtt gaagatgcct acatcgtgcc cacatgagct ttagcttggg
     2341 ctttggcatg aagtgtatac tcaaagcatg taggtattct taacaacagc ccttcccagt
     2401 catgggtgtg tactacgccc attaccacgt ttatgcccaa caagcatccc acggcacagg
     2461 taataataac ttctccattt tatggatgag gaaacaggcc gagggagatt cagtggccag
     2521 cccaaggtca tacagctagc aaatgataga gccagaattc aaaccaggaa cacttgtttc
     2581 cagaacctgt gcactgtcta ctggccaatg cctgcccccc atctccttcc ttcccaaccc
     2641 tagggcttac gacattctgg actcagattt gtatcggggt tcactctcac agccagctgc
     2701 cacatttggg gaggtggctg gttggggtct gttcattcag gagctgaaag agcttttttg
     2761 ctatgcaaag gtgagtgatg gtaagtgtgt gcgtgtgccc ttgtgtgcat ttggggatgt
     2821 aagtgttcag aaccctggat ttcggtgttc tggaaccaga aaggacatgt tcaacaggca
     2881 agggcaggag caggtttggg gtgtggctga agaggaagct ctgactaccc aaacccccca
     2941 tcttcctggg tgggcaaagc ctggaggtgg ggccctcgga gcatctccac tgtacagatg
     3001 gggagactga ggcccgaaga acagccactt gctcaaactc acacagctgt gccaggctag
     3061 gactcaggtc tttctccatt tccctggcca gagatttctg cctggtgttc aagaccgctc
     3121 cccagtagta gccacaggaa tccaagggga gtggacatgc caacaggggc tgggtcaggg
     3181 ctggtggagg gtggccctgg gcctaggtac acatagctcc agtccaggcc caaagtgggg
     3241 agggtccacc agatctggct gaggcttatc tctttcccca ccttcctgga aggtccctgg
     3301 gaaaagaccc ccactcagga atcacctgtt ctatggcaaa caacgcacac aacatcacca
     3361 tggtccactg ggtggtacta ttgctctccc cactttacag aagagaaagt tgaggctctg
     3421 agagtaatgg gttttcattt attcactgct gtccttgtgg acagcttaaa ttctagccag
     3481 gggagacagt aataaagaga taagctaaaa catggtaatg tcagagagcg atgagtcctc
     3541 agagaaaaac agagaagggg cacagggagc gcgtgtaatc tctaaaagag ggtgccccca
     3601 aaaggccttc ctgacggtga cgtctgattt gcctaaagtc acatagtaaa agagttgagc
     3661 tgaggtttga acccaggtcc atttgactcc aaatctgctt ctttcctagg tgagggaatg
     3721 ggtttcagga gcagctcaga cacagcaaga aaggaagcca gggcagggag ctctgtcccc
     3781 cggctaggga aaatgtgggg ctctccaggc tacccctaga ccttcgggag gggcggtgta
     3841 ggaacaggcc tccttgctgc ctccgcctca ctcccaagga gcacccacca aggaccagaa
     3901 ggagaggggc caggtgcctc tcctgccctg ggtgggcttg gccctttgct tccccatcct
     3961 agcttctggc tccagggccc agcagggccg aatgctggcc agcctcatgt ctgcgagggc
     4021 ctgtgattga ccctcatgct gtgagtcctc atctgtctgt ctgggtgtgg ctgtgtggtg
     4081 gatctgagac atttctgaga gcctgtatct gccaaggtct ctgccttggg tcctgggccc
     4141 accctgaggg tgtctgaatc tgtccctggg ttggggcctc tgtgcgtggt ggggctagct
     4201 ggcttctccc tgctcccggg attcttcaga tacacctcag gtcttccctg tgcttctcgc
     4261 tctgtgtttc ctccaggaag cctccttggc taagccctcc tgtggctgta aagatgcggt
     4321 ttatacaaca caccgtgcta cgcttctcct tagtaaatat ttatagagaa gtctggcttt
     4381 cctccttgga atgggggccc ctaaaggctg tgtcccctct ccaactgagg gtccctgaga
     4441 gaagggacat gtctgccccc cccaaactga agcctctatg tctctttcag cctcagactc
     4501 agctggtgct cggcctgggg ctgctcagca ccacatgcct gtgtgtgtgc gtgcgcgcct
     4561 gtgtgtgtgt gttttggggg ggggagtagt caagccttcc agcctctctg cctttgccag
     4621 ttgtccaacc ccatgcctga ccccgcccag ttgcagaggc ctaggagggt gagctgggca
     4681 gtgggggctc cctggcttgg gggaggaaaa ggctggggct cagaaccctg cctctctgcc
     4741 agggtaggcc ttggggtggg ggtggggccc acctctcctc ccctccttcc taggtcctgt
     4801 gtagaggagg ggggcagccc ccgccagggc catgaccgcc tctccctgca ataagtgagg
     4861 agacagcagc tattaatata agatgagttc acgggctcac agcttctgca agctggaaaa
     4921 caggctcccg gggccggggg ctacggcaag tctcgtctgt cagattctct cctggagcct
     4981 ggagcccatc agccccgcgt accccagctc cctacaggct gagacctggg cgcacacagg
     5041 cacgagcaca caggcacaca cgtgggggtc caggcctctg gctgttcgga gaacacacac
     5101 acatgcacac atatccagac acgcacgtac acccagatgt atctgcatac tggtacgcac
     5161 acctgtgcac acagatatat catgggacat atgtacacag accatgtcaa cttcatgtgc
     5221 acatgttcgc atgcagaagc acatacttaa ctgtatgcaa tgcccttgca cacacatgta
     5281 tacacagaca cacttaccct tatatataca tgtgtgcaca caggtccaga cagacccatc
     5341 tgcataccac cacacaccca catatacaca ggcacaaaac tgcacacgtg catacagatg
     5401 gcatccaaaa tcatgtccat atatttgcat acaggaccac atgcaaggac ctgaatgcac
     5461 gtacgtgtct tttgcacaca gtgtacacac agtcacacag gctcctcact gtgaatgctc
     5521 agcaaccatg aattcacagg cagacccttg gcttccagca ccatccggct ggctcagtct
     5581 cccctccccc agcctcatga caggcagctc atgctcctgc caaccccaat gcccgccttt
     5641 ggcttcccgc cccccggggg tccccagatc cctgattaac cccctcacta attggccacc
     5701 agccccttga ctttgctgca ggccttctcg ggagctggga gcgagaggct gcaaattggc
     5761 caagcaggat gggtctgggg aatagagtgc gaggcggggg gtggggggtg ctatgagctc
     5821 agggcctggc tggagccagg cagggcaccc cctataccag ggctgggggg gcactggtat
     5881 tgtattctca tgggagggca ttctaggatt catgtgtacc cagtcacctg agctttccct
     5941 gaatgcattt tttttttccc ctgaatgcac ttttgcacac acttactagt catgtgggtg
     6001 gacatgcccc accccacttc tccacacaaa tgcatgtgaa catctgcaca cacccaagta
     6061 cactcacgaa caaacccaat aagcatacag gcaaaatctt gcctgttcat aaattcaccc
     6121 gccagaaacg caaagaccat ttaggtacat acatccaaac atacttcacc taaacacaca
     6181 aatgtatcac gtttgcaaca gggttgcaaa catacaaatt tacatgttac acatgcctat
     6241 gaatgtacat ctaagtatac ctgtaggcat gtaagaacat acattcacat ctgtgtgtgc
     6301 acacccatgg agtccaggca tgcgtgcaca caccactccg gtgtgtgcct accttgatga
     6361 actagcaagt agccacagga tagggagaac ccccatagcc agccactggc tttgcagagg
     6421 aatagggagc ttgaggttcc tgcagtctat aggcaggggt ggggagtggt ggaactcaac
     6481 taatgcctaa gcctggtact tcctctgggt tctcaccctt cagggcagag gttctggctt
     6541 ttgcttctgt agttcctgtc tccttggctc tggacccaag cccatagggt gttctacttt
     6601 ctaccaatca gcctggggca ttggaaagaa gagggtttct atttccatgc ctgctgtcaa
     6661 cttgctgtgt gacttcagac aagttgctgt atctctctgt gcttctgttt cctcaactat
     6721 aaaataggaa taaaaagctt ttaaagtgtt ggtaatcctt gcagaactgg cctgaggagt
     6781 ccatggggtc atgtttatgg atgtgcctta ctcaggaaca tgtctgggag aggttagttt
     6841 ccaagatact gagataccag ggggctgggg gtgtggggtg cagcatacat catcctggtc
     6901 aacccctcat tgaatagtgg aagaagctga ggcccagagg gagcagcaag gtgggagcta
     6961 gaagagctga cctctgactt ctcagccagg atatctactc ttctttaaat atgtatgcag
     7021 agcgtcagca ggtgtgtgca caattcccca ggtaagggtg gggatggctg cctgctgtgg
     7081 tgggaaggtg tctctgcagg actcctgcca ccatggtact gacaattcta ccatgaagag
     7141 attcttttgg gtgtgaaagg cttatttttt gtcttccagc ttcaggcccc ccactagaca
     7201 cctcttctcc tggggctaag gctggctttg gggagcacct gaaacagccc ctagcctcat
     7261 gatctgggag ggaactagct gacaaccacc ccagagcaga atttacagga agtggtgcca
     7321 ggttgccctg gccgctgggt gaccaggagg gggcagtgag gaactggcgg aggcagcacg
     7381 aagggagggg tggctcctga ggactttgtg tgaggtctgc ttgcacctgt gtgttcctgt
     7441 aactgtgtgc tgatctgtgc ccttgtttgc acaaggatag gactctgtgt gcagtgtgtg
     7501 cacatctccg tgtgtatcca tgtccgagtg tgcatagatg catccatctg aacaggtgtg
     7561 tgcatacact gaaggcatgc ctgacggaag ccccagccca tacctaggga actcactttg
     7621 ttccaggcag ttgagggcac agggtacttc taactctaaa ggtctaggat agccgaaccc
     7681 tcagtctagc ccacttgatt tcaaagtaag agcaaaaata accatcacct ataaaactgg
     7741 gcaccagggg gtagggtaga ccgtaacaga aaacctttaa cacaccccct cacaccaaag
     7801 accatgatgc tagatggaga gattctgaaa agggtttaag ttccatggtg gacagagcac
     7861 aagagaccca cgtgcgaact atggctctgc tcctggccag ctatgtgatc ttaagcaact
     7921 caacctctct gaatcttttc ctcatgtgta aaatgggaga cccttggttc atgaggttga
     7981 aataaaatgt atgcggtctt gggcaggtag tagtaaatgc tcattcttct caggattagc
     8041 ccaaagagct gaagctccca agcggaggag ccggaattca agctcaggcc tccttcttcc
     8101 cagaaccaca ttccttccct ccaattcccc accaagggcg gctcctgacg ccaccatttt
     8161 gtcttctccc agggcgggcg tctggctgcc tgtcagtcac cggcctcggg aagccaagtg
     8221 ctgactaaac acaggcctga gcaggagggt ggagcgaggg gctccgcccg gggcgagctg
     8281 gctcccgcgc cccctcccct gcaccccacc tccagcgatg agctcagagt ggctggcgca
     8341 gcacttgctg acaattcaaa acttctgccc cctctcctgg gatgccagcg ggtgactctc
     8401 tctgaacagc aggcgtgacc agccaagtca ccaaccctgc tcccaaccct ctcctggggc
     8461 caccgcactg tgtttgctgg gcccagaact gggtgtctac tcataaatta cccccaggga
     8521 cagtcacccg cagcagctgg gctcggaaca accgttgctt cctgggtagg tcattttttg
     8581 ggggtcagaa tataaaccca gctccctcac tttcccaggc agaagggaca tgcagcaccc
     8641 taaacctttt atcggattcc attgtaaatc attctattta aggtaagttg cttgggtctg
     8701 agaggcagac aagatgccgg ccagatgttg ggaggcagca tcagcattca gcctgtgctc
     8761 ctctcctgcc tgatgcaagg agtctccctg gccccagcac ccccctctca gccagctgag
     8821 ggcctctagg tcccccagtt gggtctcacc ctaacccaaa atggtttccg gccttcatcc
     8881 cccccccctc ctacacaggg tgcaccatcc agacccagag gcctcccgcc ctccgagccc
     8941 acccacaccg acctccct
//
LOCUS       XM_032607244             659 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD164 molecule like 2 (CD164L2),
            transcript variant X1, mRNA.
ACCESSION   XM_032607244
VERSION     XM_032607244.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..659
                     /gene="CD164L2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116741102"
     CDS             65..598
                     /gene="CD164L2"
                     /codon_start=1
                     /product="CD164 sialomucin-like 2 protein isoform X1"
                     /protein_id="XP_032463135.1"
                     /db_xref="GeneID:116741102"
                     /translation="MAAPGPRALRAALCGGCCCLLLCAQLVVAGKGARGFGRGALLRM
                     NIWPAVRGACKQLKLCEHCVEGNRAHNLTGCVWEQCQPEEPGHCVAQAEVVKEGCSVY
                     NRSESCPAVHHHPTYEPKTITTESPSVPEAHGPGFDGASFIGGVVLVLSLQAVAFFVL
                     RFLKAKDSTYQTLEENQ"
     misc_feature    221..583
                     /gene="CD164L2"
                     /note="Multi-glycosylated core protein 24 (MGC-24),
                     sialomucin; Region: MGC-24; pfam05283"
                     /db_xref="CDD:461610"
ORIGIN      
        1 tccagaaggg acgcgccaca ccagcgctcc gcggaccccg acccccaggc tccgcctccg
       61 cgccatggcc gcgccgggac cccgcgcctt acgggctgcg ctgtgtggcg gctgctgctg
      121 cctcctcctg tgtgcccagc tcgttgtagc tggtaaagga gctcgggggt ttgggcgggg
      181 agcccttctc cgcatgaaca tctggccagc tgtccgaggg gcctgcaaac agctgaagct
      241 ctgtgagcat tgtgtggagg ggaacagagc acacaacctc actggctgcg tgtgggagca
      301 gtgtcagccg gaggagccag gacactgtgt ggcccaagct gaggtggtca aggaaggttg
      361 ctctgtctac aaccgctcag agtcatgtcc agctgtgcac caccatccca cttatgaacc
      421 gaagaccatc acaacagaga gcccttcggt ccctgaggcc cacggccctg gctttgatgg
      481 ggccagcttc atcggcggcg tcgtgctggt gctgagcctg caggcagtgg ccttctttgt
      541 cttgcgcttc ctcaaggcca aggacagcac ctaccagaca ctggaggaga accagtaggt
      601 gacagcacag gcagccttcg gcctgcagct ctgtggccac gggcaggagc ctgggccct
//
LOCUS       XM_032607245             749 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD164 molecule like 2 (CD164L2),
            transcript variant X2, mRNA.
ACCESSION   XM_032607245
VERSION     XM_032607245.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..749
                     /gene="CD164L2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116741102"
     CDS             65..589
                     /gene="CD164L2"
                     /codon_start=1
                     /product="CD164 sialomucin-like 2 protein isoform X2"
                     /protein_id="XP_032463136.1"
                     /db_xref="GeneID:116741102"
                     /translation="MAAPGPRALRAALCGGCCCLLLCAQLVVAGKGARGFGRGALLRM
                     NIWPAVRGACKQLKLCEHCVEGNRAHNLTGCVWEQCQPEEPGHCVAQAEVVKEGCSVY
                     NRSESCPAVHHHPTYEPKTITTESPSVPEAHGPGFDGASFIGGVVLVLSLQAVAFFVL
                     RFLKAKDSTYQTLI"
     misc_feature    221..583
                     /gene="CD164L2"
                     /note="Multi-glycosylated core protein 24 (MGC-24),
                     sialomucin; Region: MGC-24; pfam05283"
                     /db_xref="CDD:461610"
ORIGIN      
        1 tccagaaggg acgcgccaca ccagcgctcc gcggaccccg acccccaggc tccgcctccg
       61 cgccatggcc gcgccgggac cccgcgcctt acgggctgcg ctgtgtggcg gctgctgctg
      121 cctcctcctg tgtgcccagc tcgttgtagc tggtaaagga gctcgggggt ttgggcgggg
      181 agcccttctc cgcatgaaca tctggccagc tgtccgaggg gcctgcaaac agctgaagct
      241 ctgtgagcat tgtgtggagg ggaacagagc acacaacctc actggctgcg tgtgggagca
      301 gtgtcagccg gaggagccag gacactgtgt ggcccaagct gaggtggtca aggaaggttg
      361 ctctgtctac aaccgctcag agtcatgtcc agctgtgcac caccatccca cttatgaacc
      421 gaagaccatc acaacagaga gcccttcggt ccctgaggcc cacggccctg gctttgatgg
      481 ggccagcttc atcggcggcg tcgtgctggt gctgagcctg caggcagtgg ccttctttgt
      541 cttgcgcttc ctcaaggcca aggacagcac ctaccagaca ctaatctgac ccccttcagg
      601 cctggattcc acactcaggg gaaaaaggat gaagaggctg ccctcttgac ccgcttgtgg
      661 gcactagggg tgggagaaac tgtggtcacc aaattctggc ccctgtgggc accgagcagg
      721 ctcggtgccc aatacctgac atcccctcc
//
LOCUS       XM_032607246             586 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD164 molecule like 2 (CD164L2),
            transcript variant X3, mRNA.
ACCESSION   XM_032607246
VERSION     XM_032607246.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..586
                     /gene="CD164L2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741102"
     CDS             65..586
                     /gene="CD164L2"
                     /codon_start=1
                     /product="CD164 sialomucin-like 2 protein isoform X3"
                     /protein_id="XP_032463137.1"
                     /db_xref="GeneID:116741102"
                     /translation="MAAPGPRALRAALCGGCCCLLLCAQLVVAGKGARGFGRGALLRM
                     NIWPAVRGACKQLKLCEHCVEGNRAHNLTGCVWEQCQPEEPGHCVAQAEVVKEGCSVY
                     NRSESCPAVHHHPTYEPKTITTESPSVPEAHGPGFDGASFIGGVVLVLSLQAVAFFVL
                     RFLKAKDSTYQTL"
     misc_feature    221..583
                     /gene="CD164L2"
                     /note="Multi-glycosylated core protein 24 (MGC-24),
                     sialomucin; Region: MGC-24; pfam05283"
                     /db_xref="CDD:461610"
ORIGIN      
        1 tccagaaggg acgcgccaca ccagcgctcc gcggaccccg acccccaggc tccgcctccg
       61 cgccatggcc gcgccgggac cccgcgcctt acgggctgcg ctgtgtggcg gctgctgctg
      121 cctcctcctg tgtgcccagc tcgttgtagc tggtaaagga gctcgggggt ttgggcgggg
      181 agcccttctc cgcatgaaca tctggccagc tgtccgaggg gcctgcaaac agctgaagct
      241 ctgtgagcat tgtgtggagg ggaacagagc acacaacctc actggctgcg tgtgggagca
      301 gtgtcagccg gaggagccag gacactgtgt ggcccaagct gaggtggtca aggaaggttg
      361 ctctgtctac aaccgctcag agtcatgtcc agctgtgcac caccatccca cttatgaacc
      421 gaagaccatc acaacagaga gcccttcggt ccctgaggcc cacggccctg gctttgatgg
      481 ggccagcttc atcggcggcg tcgtgctggt gctgagcctg caggcagtgg ccttctttgt
      541 cttgcgcttc ctcaaggcca aggacagcac ctaccagaca ctgtga
//
LOCUS       XM_032607250            1461 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus aldo-keto reductase family 1 member A1
            (AKR1A1), mRNA.
ACCESSION   XM_032607250
VERSION     XM_032607250.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1461
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1461
                     /gene="AKR1A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 4 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741154"
     CDS             186..1361
                     /gene="AKR1A1"
                     /codon_start=1
                     /product="aldo-keto reductase family 1 member A1"
                     /protein_id="XP_032463141.1"
                     /db_xref="GeneID:116741154"
                     /translation="MPGPSPSSGRSFFITARLKSRCPVSGQFLAAHQPRKLRPVGSLA
                     GHRTELKSHTFLLTSCARAEGAMAASCILLHTGQKMPLIGLGTWKSEPGQVKAVIKYA
                     LSIGYRHIDCAAIYGNETEIGEALKENVGPGKLVPREELFVTSKLWNTKHHPDDVEPA
                     LRKTLADLQLEYLDLYLVHWPYAFERGDNPFPKNADGTIRYDSTHYKETWKALEALVA
                     KGLVRALGLSNFSSRQIDDVLSVASVRPAVLQVECHPYMAQNELIAHCQARGLEVTAY
                     SPLGSSDRAWRDPDEPVLLEEPVVLALAEKHGRSPAQILLRWQVQRKVSCIPKSVTPS
                     HILQNIQVFDFTFSLEEMKQLDALNKNLRFIVPMLMVDGKRVPRDAGHPLYPFSDPY"
     misc_feature    405..1319
                     /gene="AKR1A1"
                     /note="AKR1A family of aldo-keto reductase (AKR); Region:
                     AKR_AKR1A1-4; cd19106"
                     /db_xref="CDD:381332"
     misc_feature    order(441..449,516..518,531..533,621..623,627..629,
                     720..725,867..872,933..935,1011..1034,1119..1121,
                     1164..1181,1188..1190,1200..1202,1284..1286)
                     /gene="AKR1A1"
                     /note="active site"
                     /db_xref="CDD:381332"
     misc_feature    order(516..518,531..533,621..623,720..722)
                     /gene="AKR1A1"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381332"
ORIGIN      
        1 gccgtcggcg caggcttccc tcacccggga gttctccaaa ctcgcgctgt ggagtgtgcc
       61 cagactccgc caatccaccc accagcatcc tgaggaagag acagtgcagc cccccagctc
      121 aggcgtccac tccccagctt gtttctgagg acaggggcgg ggtccaccac tgcgcgtgat
      181 gttgaatgcc cggccccagc ccctcctctg ggaggagctt cttcatcacc gccagactta
      241 agtcccggtg tccagtctca ggccagtttc ttgctgccca ccaaccccgg aagctgaggc
      301 ccgttgggtc gctagcaggg cacaggactg agctgaaaag ccatactttc ctgctaacgt
      361 cctgtgctcg tgccgagggg gcaatggcgg cttcctgtat cctcctgcac actggacaga
      421 agatgcccct gattggactg ggcacctgga agagtgagcc tggccaggta aaagcagtta
      481 ttaagtatgc cttgagtata ggctaccgcc acattgactg tgctgctatc tatggcaacg
      541 agactgagat tggggaggcc ctgaaggaga atgtgggacc tggcaagttg gtgcctcggg
      601 aggaactgtt tgtgacttcc aagctgtgga acacgaagca ccaccctgac gatgtggagc
      661 ctgccctccg gaagacactc gctgacctcc agctggagta tttggacctg tacctggtgc
      721 actggcctta tgcctttgag cggggtgaca acccctttcc taagaatgct gatgggacta
      781 tacgctatga ctccacccac tacaaggaga cctggaaggc tctggaggca ctggtggcta
      841 aagggctggt gcgggcactg ggcctgtcca acttcagcag tcggcagatc gatgatgtgc
      901 tcagtgtggc ctctgtgcgc ccagctgtcc tgcaggtgga atgccaccca tacatggctc
      961 agaatgagct gattgcccac tgccaagcac gtggcctgga ggtgactgct tatagccccc
     1021 tgggctcctc tgatcgtgct tggcgtgatc ctgatgagcc tgtcctgctt gaggagccag
     1081 tggtcctggc actggctgaa aagcatggcc ggtctccagc tcagatcttg ctcaggtggc
     1141 aggtccagcg gaaagtgagc tgcatcccca agagtgtcac accttcccat atccttcaga
     1201 acatccaggt gtttgacttc acttttagcc tggaggagat gaagcagcta gatgccctga
     1261 ataaaaattt gcgattcatc gtgcccatgc ttatggtgga tgggaagagg gtcccgagag
     1321 atgcaggtca ccctctgtac cccttcagtg acccatattg agaccacagc ttcctggctt
     1381 ccttttcatc tctccagcta taaagtcctg ccatccccag aaagaaggag ttaataaagc
     1441 cattggagta ttcatccatg a
//
LOCUS       XM_032607262            5420 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus STIL centriolar assembly protein (STIL),
            transcript variant X1, mRNA.
ACCESSION   XM_032607262
VERSION     XM_032607262.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5420
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5420
                     /gene="STIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116741162"
     CDS             840..4706
                     /gene="STIL"
                     /codon_start=1
                     /product="SCL-interrupting locus protein isoform X1"
                     /protein_id="XP_032463153.1"
                     /db_xref="GeneID:116741162"
                     /translation="MEPTYPLTGTQMNTRFSSSRMVPFYFPPSKCALWNPMPIGDYIY
                     LHLNYHRNPKLVVTEKTIRLACRHAKQNKENLPCFLLGSLTVDEDEESVTLTIDRFDP
                     GREVPECLERTPTASLPGDFVIPCTIHTQGLCSREIIVHNADDFNSAFKALQHHVCSK
                     DSLDCGKLLSLRAHITSRESLDTVDFDLDWAAVTLANTFKCTPVKPIPIIPTALARNL
                     SSNLNISQVQGTYKYGYLTMDETRKLLLLLESDPKIFSLPLVGIWLSGIIHIYSPQVW
                     ACCLRYMFSSSIQERVFSESGNFIIVLYSVTHKDPEFYECLPCDGRLPDLRFQLLTSK
                     ETLHLFKNVEPSDKNPVYFELSAEGQNAEREFFNKVSKNLSIKRSSQKLPPGKMPISD
                     HDSGVEDEDVSPRPIPSPHPVSQKVSKIQPSVPELSLVLDGNFIESNPVPNPLEMVNN
                     ENPPLLINHSEHFEPLQPQLYDEKHSPEVEAGEPSLRGLPNQLNQDTAPLRHCKVRRP
                     STCKKGNPHIRSSVKPSSFNGPSLEASEKLQTVSAGNVHKEEYPVRSSTFNSRQSSFA
                     PQSHPHNFGFSPHNSGRPMEFQIPTPPPPSYYSTSVCNCFQHHGRIQYSPINSWQGMN
                     TVGSTQDLQSEALQKHSLFHPSGCPAQDHNAFCSSSRPVALRPQGNMGGCSSHSNVEP
                     SPVARLPPHVDSCNPWPCAVCVHTPKTGSDNGMMGLSPDAYRFVTEQDRQLRLLQAQI
                     QRLLEAQSLQPCSPKTTTVEDTVQAARQTELVSMEAQSPPALHMRKSVSIAVSTGASL
                     FWNAAGDDQEPESQLRQDDTKISSEDMNFSVDINNEVTSTPGSASSLKAVDIPSFEES
                     NTAVEEFNQQLSISSSSSPLVRKEPDVPVFFPNPLLAESVSMCFQSGPTEGATNSSVT
                     SGEPKTEQVMQPLPHQPSDNQKRFQDVLGQGNHLLNNSHKETEQPSTKAVIISHECTR
                     MQNVYHTKKKNHDSEPVDKDCVLNATLKQLRSLGVKIDSPTKMKKNVHKVDHASVLAC
                     ISPEAVISGLNCMSFANVGMSGLSPNGVDLSMEANAIALKYLNENQLSQLSLTRSNQN
                     NCDSSFSLLHINTDRNTVGLSLISPNNMSFATKKYMKRYGLIQSNDNSEDEEEPPNNT
                     DTKSEHLVNQNLTCIAEQLDCQKEPSSNACEVTTCCNCDSMGTHTDMPVLRNITNEVV
                     QPKATPQLNENPDFLLKNLKSSPAVKLRTGKAEFIQHPEKENVRDTPIFPESLKPSDT
                     LKQMNSMNSVGTFLDVKRLRQLPKLF"
     misc_feature    936..2144
                     /gene="STIL"
                     /note="SCL-interrupting locus protein N-terminus; Region:
                     STIL_N; pfam15253"
                     /db_xref="CDD:464593"
ORIGIN      
        1 cttgaacaag tcgacacacg aataaataaa tgcaaatagc aatatcggct ttgaaggaac
       61 caaaaggagg aataacaaga gatgaatgta atttggggaa aaaccttgag aacaaaagga
      121 gtccaaggaa tgagtcttag tgaacagacc tttaaaagtt ggagagagaa ggaggaacct
      181 gagaaggcag agccagaaag ggtggatgca tattcagaac aagacagcct acaaatgcag
      241 cacagacttc aagacactcc cacgttgctc aagaaactaa caaaagtcta gagaaacgga
      301 tttggtacgc ttctagtcgc cgagcgagga ccagggcaac gagcacttcc ggtttcctct
      361 gccatctcat ccgccaggct gggcttttca ctgcgcgtgc gcaaagcccg ccccaccccg
      421 gaacttaacc gttgacgaaa ttgaagtgtt taaatcctcc ggaatctaat cctggatcgc
      481 gggtggcgcc ctcctttctc cacggaagct tgggattggt cggcatggga ccggtgcggg
      541 gcgctggttg gctggagcgc cagggtgtcg cggcgaccgt gcgtgacgcc ttcggcaccg
      601 cccttgctcc ctgacgggtt gggcttctga ccagtcagca ggcgcggcgc ggacttcggt
      661 ttcgcgagct tctgtttgcc gccttggttc ccgcgacctc aacgtcccag aggcggggcg
      721 gagtcggcgg aggcgctctt tggggccgac ctctgttccg gcccaacaaa caaacctcga
      781 ctcggcggag gttgaggatc ctgagcatgt gaaattgagt caatcattca ccaactatca
      841 tggagcctac gtatcctctc acagggaccc agatgaatac caggttttct tcaagcagga
      901 tggtgccttt ctattttcct ccatcaaaat gtgcgctttg gaacccaatg ccaattggag
      961 attatatcta cttacatctc aattaccaca gaaatccaaa gcttgtggta actgaaaaga
     1021 ccatccgact tgcttgtcgt catgctaagc agaataaaga aaacttgcca tgctttttac
     1081 ttggttctct cacagtagat gaagatgaag aaagtgtgac attgacaata gatcgttttg
     1141 atcctggtcg agaggtacct gaatgcttag aaagaacccc tactgcttct cttcctgggg
     1201 actttgtgat cccttgcaca attcacactc aaggactttg ttcaagagaa ataatagtgc
     1261 acaatgcaga tgacttcaat tcagctttta aggctctgca gcatcatgta tgtagcaaag
     1321 attccttgga ttgtggtaaa ctgctttccc taagagctca tatcacttcc agggagagtt
     1381 tggacactgt ggattttgac ttggattggg cagcagtaac tctagcaaat acctttaaat
     1441 gcacacctgt gaagcccatc cccattattc caacagctct ggcaagaaac ttgagcagta
     1501 atctgaatat ttctcaagtt caaggtacct ataaatatgg atatcttacc atggatgaga
     1561 cacgcaaatt gttacttttg ctggaatctg atcccaagat tttttctctc ccattagtgg
     1621 gaatctggct gtctggaatt atacatatct atagtcctca ggtgtgggct tgctgcttgc
     1681 gatacatgtt cagttcttct attcaagaaa gggttttttc agaatctgga aatttcatta
     1741 tagttctcta ttctgtgaca cataaggatc ctgagtttta tgaatgcctc ccttgtgatg
     1801 gcaggttacc tgaccttcga ttccagctac taactagtaa ggaaacatta catcttttca
     1861 aaaatgttga accttctgac aaaaacccag tctattttga actgagtgct gaaggccaga
     1921 atgcagaaag agagtttttt aacaaagttt ccaagaatct ttcaattaag aggtcttctc
     1981 aaaagttacc tccagggaaa atgccaataa gtgatcatga ctctggtgtt gaagatgaag
     2041 atgtttctcc aagaccaatt cctagtcctc atccagtgag tcagaaggtt tctaagatcc
     2101 agccatcagt tcctgaactt tcacttgtat tggatggcaa cttcatagaa tcaaaccctg
     2161 tgcctaaccc actggaaatg gtgaataatg aaaatcctcc tttattgatt aaccattctg
     2221 aacactttga gccattgcag ccgcagcttt atgatgagaa acacagccca gaagttgaag
     2281 ctggagagcc ttccttgaga gggctaccaa atcaattaaa ccaggacact gctcctttga
     2341 gacactgcaa agtaagacgg ccatctacct gtaagaaagg gaacccccat atcaggagca
     2401 gtgttaaacc atcttctttt aatggaccat ctcttgaggc atctgaaaag cttcaaacag
     2461 tttctgctgg aaatgtacac aaagaagagt atcctgtaag atcctccaca tttaattcca
     2521 ggcagtcttc ctttgcccca cagtcccacc cacacaattt tggtttttca ccccataatt
     2581 caggaagacc aatggaattt cagataccta ctcccccacc accatcttac tattccacaa
     2641 gtgtttgcaa ttgttttcag catcatggcc gtattcaata tagtccaata aattcttggc
     2701 aaggaatgaa tacagtagga tccactcaag acctccagtc tgaagccctt caaaaacatt
     2761 cattatttca tccaagtgga tgtccagctc aggatcataa tgcattctgt tcctcaagta
     2821 ggcctgtagc cttgagacct cagggaaaca tggggggttg ttcttcccac agcaatgtag
     2881 aaccatcgcc tgtggcaaga ctacctccac acgtggactc atgtaaccca tggccttgtg
     2941 cagtatgcgt gcacacaccc aagactgggt cagataatgg aatgatggga ctatctccgg
     3001 atgcgtacag gttcgtcaca gagcaagaca gacagctgcg actacttcag gcacagattc
     3061 agcgtttgtt ggaagcacag tctctgcagc cctgttcccc taagacaacc actgttgaag
     3121 acacagtgca agctgccaga caaacggagt tggtttccat ggaagcacag tctccccctg
     3181 ctttgcacat gagaaaaagt gtaagcattg ctgtaagcac aggtgccagc ttgttttgga
     3241 atgcggcagg tgatgatcaa gagcctgaat ctcagctgag acaagatgat accaagattt
     3301 ccagtgagga catgaatttt tctgtcgata ttaataatga agtcacaagt actcctggta
     3361 gtgcatcttc attaaaagct gttgatattc ccagttttga agagagcaac actgctgtgg
     3421 aagaatttaa tcagcaactt tctatatcca gcagctcttc tccacttgtg agaaaagaac
     3481 ctgatgtgcc tgtattcttt ccaaatcctc tgctggcgga gagtgtaagc atgtgcttcc
     3541 aaagtggacc aacagagggc gccactaata gctctgtaac atcaggggaa cccaaaactg
     3601 agcaagtaat gcaacccttg cctcatcaac catctgataa ccagaaacga ttccaggatg
     3661 tgttgggtca agggaaccac ctattgaata actcccacaa ggaaactgag cagccatcta
     3721 ccaaagcagt aatcatcagt cacgaatgca ccagaatgca gaatgtttac catactaaaa
     3781 aaaaaaacca tgattcagaa ccagtggaca aagattgtgt tcttaatgca acccttaagc
     3841 aactaagaag ccttggagta aaaattgatt ctcctactaa aatgaagaaa aatgtacata
     3901 aagtggatca tgccagtgtg ttggcatgca tcagccctga agcagtgatc tctggattaa
     3961 actgcatgtc atttgctaac gttggcatga gtggcttaag ccccaacggt gtggatttga
     4021 gcatggaggc aaatgctata gctctgaaat atttaaatga aaatcagctg tcacaactgt
     4081 ctctcactcg atcaaaccaa aataactgtg actcatcttt tagtcttcta catattaata
     4141 cagacagaaa cacagtgggc cttagtttaa tttcaccaaa caacatgtca tttgcaacca
     4201 aaaaatacat gaagagatat ggactgattc aaagcaatga caatagtgaa gatgaagagg
     4261 agcctccaaa caatacagat accaagagtg aacacttagt gaatcaaaac cttacatgca
     4321 tagctgaaca acttgattgt cagaaagagc cttctagcaa tgcttgtgag gtaactactt
     4381 gttgtaactg tgactccatg ggcacccaca cagatatgcc agtattgaga aatattacaa
     4441 atgaagttgt tcagccaaaa gcaacaccac agttgaatga aaacccagat ttcttgttaa
     4501 agaaccttaa atcaagtcct gcagtgaaac tccgaactgg aaaagcagag ttcatccaac
     4561 atcctgagaa agaaaatgta agggacactc cgatttttcc tgaaagcttg aaaccttctg
     4621 acactttaaa gcaaatgaat agtatgaatt cagtaggcac cttcttagac gtgaagcgtc
     4681 tcagacagtt gccaaaatta ttttaaactt ttaattcccc cgccctcctg atgtgaggat
     4741 gggatgtctc ctgaagatac ttatggaagc cagagccttt tgatagtttt ggaattccta
     4801 gtcattctag ggatcactct ttcttggtag cagctgatgg caaagagctg aacaagtgac
     4861 ctgattgtct atgagatggc tggctattag gagggctaaa tgccctttgt tcaaatagtg
     4921 gcgttcagca tcactggatt tttttttttt ttaaacaaat cctaagatca gttatttcaa
     4981 caaatttaga taagcagatg ctatccaact atgaatctga attgctcttt tatactgtac
     5041 attttgaaaa gtgagtctgt tttcctagca ttttgcatct acccagcatc accaaaagaa
     5101 tataaagtta tcatgaccct gagtaaatta gctaaatcaa cccctattga atttaagggg
     5161 aaagttttat ttttaaaagt aacttaagat cttttataca aggagtatag atgttgtctt
     5221 aagatgcata tttgttaaat actgtggaag taaaactttt gcactcttgt gggttggtgt
     5281 taatgtaaca ttttcaacat atagcactag ctatcacata ataagaaaat tactgagtat
     5341 gagtgtgttt tataaacttt gtgagttttt cagatgtttt aatatttttt aatggaactt
     5401 aataaaaatg tctagatgga
//
LOCUS       XM_032607272            5417 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus STIL centriolar assembly protein (STIL),
            transcript variant X2, mRNA.
ACCESSION   XM_032607272
VERSION     XM_032607272.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5417
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5417
                     /gene="STIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741162"
     CDS             840..4703
                     /gene="STIL"
                     /codon_start=1
                     /product="SCL-interrupting locus protein isoform X2"
                     /protein_id="XP_032463163.1"
                     /db_xref="GeneID:116741162"
                     /translation="MEPTYPLTGTQMNTRFSSSRMVPFYFPPSKCALWNPMPIGDYIY
                     LHLNYHRNPKLVVTEKTIRLACRHAKQNKENLPCFLLGSLTVDEDEESVTLTIDRFDP
                     GREVPECLERTPTASLPGDFVIPCTIHTQGLCSREIIVHNADDFNSAFKALQHHVCSK
                     DSLDCGKLLSLRAHITSRESLDTVDFDLDWAAVTLANTFKCTPVKPIPIIPTALARNL
                     SSNLNISQVQGTYKYGYLTMDETRKLLLLLESDPKIFSLPLVGIWLSGIIHIYSPQVW
                     ACCLRYMFSSSIQERVFSESGNFIIVLYSVTHKDPEFYECLPCDGRLPDLRFQLLTSK
                     ETLHLFKNVEPSDKNPVYFELSAEGQNAEREFFNKVSKNLSIKRSSQKLPPGKMPISD
                     HDSGVEDEDVSPRPIPSPHPVSQKVSKIQPSVPELSLVLDGNFIESNPVPNPLEMVNN
                     ENPPLLINHSEHFEPLQPQLYDEKHSPEVEAGEPSLRGLPNQLNQDTAPLRHCKVRRP
                     STCKKGNPHIRSSVKPSSFNGPSLEASEKLQTVSAGNVHKEEYPVRSSTFNSRQSSFA
                     PQSHPHNFGFSPHNSGRPMEFQIPTPPPPSYYSTSVCNCFQHHGRIQYSPINSWQGMN
                     TVGSTQDLQSEALQKHSLFHPSGCPAQDHNAFCSSSRPVALRPQGNMGGCSSHSNVEP
                     SPVARLPPHVDSCNPWPCAVCVHTPKTGSDNGMMGLSPDAYRFVTEQDRQLRLLQAQI
                     QRLLEAQSLQPCSPKTTTVEDTVQAARQTELVSMEAQSPPALHMRKSVSIAVSTGASL
                     FWNAAGDDQEPESQLRQDDTKISSEDMNFSVDINNEVTSTPGSASSLKAVDIPSFEES
                     NTAVEEFNQQLSISSSSPLVRKEPDVPVFFPNPLLAESVSMCFQSGPTEGATNSSVTS
                     GEPKTEQVMQPLPHQPSDNQKRFQDVLGQGNHLLNNSHKETEQPSTKAVIISHECTRM
                     QNVYHTKKKNHDSEPVDKDCVLNATLKQLRSLGVKIDSPTKMKKNVHKVDHASVLACI
                     SPEAVISGLNCMSFANVGMSGLSPNGVDLSMEANAIALKYLNENQLSQLSLTRSNQNN
                     CDSSFSLLHINTDRNTVGLSLISPNNMSFATKKYMKRYGLIQSNDNSEDEEEPPNNTD
                     TKSEHLVNQNLTCIAEQLDCQKEPSSNACEVTTCCNCDSMGTHTDMPVLRNITNEVVQ
                     PKATPQLNENPDFLLKNLKSSPAVKLRTGKAEFIQHPEKENVRDTPIFPESLKPSDTL
                     KQMNSMNSVGTFLDVKRLRQLPKLF"
     misc_feature    936..2144
                     /gene="STIL"
                     /note="SCL-interrupting locus protein N-terminus; Region:
                     STIL_N; pfam15253"
                     /db_xref="CDD:464593"
ORIGIN      
        1 cttgaacaag tcgacacacg aataaataaa tgcaaatagc aatatcggct ttgaaggaac
       61 caaaaggagg aataacaaga gatgaatgta atttggggaa aaaccttgag aacaaaagga
      121 gtccaaggaa tgagtcttag tgaacagacc tttaaaagtt ggagagagaa ggaggaacct
      181 gagaaggcag agccagaaag ggtggatgca tattcagaac aagacagcct acaaatgcag
      241 cacagacttc aagacactcc cacgttgctc aagaaactaa caaaagtcta gagaaacgga
      301 tttggtacgc ttctagtcgc cgagcgagga ccagggcaac gagcacttcc ggtttcctct
      361 gccatctcat ccgccaggct gggcttttca ctgcgcgtgc gcaaagcccg ccccaccccg
      421 gaacttaacc gttgacgaaa ttgaagtgtt taaatcctcc ggaatctaat cctggatcgc
      481 gggtggcgcc ctcctttctc cacggaagct tgggattggt cggcatggga ccggtgcggg
      541 gcgctggttg gctggagcgc cagggtgtcg cggcgaccgt gcgtgacgcc ttcggcaccg
      601 cccttgctcc ctgacgggtt gggcttctga ccagtcagca ggcgcggcgc ggacttcggt
      661 ttcgcgagct tctgtttgcc gccttggttc ccgcgacctc aacgtcccag aggcggggcg
      721 gagtcggcgg aggcgctctt tggggccgac ctctgttccg gcccaacaaa caaacctcga
      781 ctcggcggag gttgaggatc ctgagcatgt gaaattgagt caatcattca ccaactatca
      841 tggagcctac gtatcctctc acagggaccc agatgaatac caggttttct tcaagcagga
      901 tggtgccttt ctattttcct ccatcaaaat gtgcgctttg gaacccaatg ccaattggag
      961 attatatcta cttacatctc aattaccaca gaaatccaaa gcttgtggta actgaaaaga
     1021 ccatccgact tgcttgtcgt catgctaagc agaataaaga aaacttgcca tgctttttac
     1081 ttggttctct cacagtagat gaagatgaag aaagtgtgac attgacaata gatcgttttg
     1141 atcctggtcg agaggtacct gaatgcttag aaagaacccc tactgcttct cttcctgggg
     1201 actttgtgat cccttgcaca attcacactc aaggactttg ttcaagagaa ataatagtgc
     1261 acaatgcaga tgacttcaat tcagctttta aggctctgca gcatcatgta tgtagcaaag
     1321 attccttgga ttgtggtaaa ctgctttccc taagagctca tatcacttcc agggagagtt
     1381 tggacactgt ggattttgac ttggattggg cagcagtaac tctagcaaat acctttaaat
     1441 gcacacctgt gaagcccatc cccattattc caacagctct ggcaagaaac ttgagcagta
     1501 atctgaatat ttctcaagtt caaggtacct ataaatatgg atatcttacc atggatgaga
     1561 cacgcaaatt gttacttttg ctggaatctg atcccaagat tttttctctc ccattagtgg
     1621 gaatctggct gtctggaatt atacatatct atagtcctca ggtgtgggct tgctgcttgc
     1681 gatacatgtt cagttcttct attcaagaaa gggttttttc agaatctgga aatttcatta
     1741 tagttctcta ttctgtgaca cataaggatc ctgagtttta tgaatgcctc ccttgtgatg
     1801 gcaggttacc tgaccttcga ttccagctac taactagtaa ggaaacatta catcttttca
     1861 aaaatgttga accttctgac aaaaacccag tctattttga actgagtgct gaaggccaga
     1921 atgcagaaag agagtttttt aacaaagttt ccaagaatct ttcaattaag aggtcttctc
     1981 aaaagttacc tccagggaaa atgccaataa gtgatcatga ctctggtgtt gaagatgaag
     2041 atgtttctcc aagaccaatt cctagtcctc atccagtgag tcagaaggtt tctaagatcc
     2101 agccatcagt tcctgaactt tcacttgtat tggatggcaa cttcatagaa tcaaaccctg
     2161 tgcctaaccc actggaaatg gtgaataatg aaaatcctcc tttattgatt aaccattctg
     2221 aacactttga gccattgcag ccgcagcttt atgatgagaa acacagccca gaagttgaag
     2281 ctggagagcc ttccttgaga gggctaccaa atcaattaaa ccaggacact gctcctttga
     2341 gacactgcaa agtaagacgg ccatctacct gtaagaaagg gaacccccat atcaggagca
     2401 gtgttaaacc atcttctttt aatggaccat ctcttgaggc atctgaaaag cttcaaacag
     2461 tttctgctgg aaatgtacac aaagaagagt atcctgtaag atcctccaca tttaattcca
     2521 ggcagtcttc ctttgcccca cagtcccacc cacacaattt tggtttttca ccccataatt
     2581 caggaagacc aatggaattt cagataccta ctcccccacc accatcttac tattccacaa
     2641 gtgtttgcaa ttgttttcag catcatggcc gtattcaata tagtccaata aattcttggc
     2701 aaggaatgaa tacagtagga tccactcaag acctccagtc tgaagccctt caaaaacatt
     2761 cattatttca tccaagtgga tgtccagctc aggatcataa tgcattctgt tcctcaagta
     2821 ggcctgtagc cttgagacct cagggaaaca tggggggttg ttcttcccac agcaatgtag
     2881 aaccatcgcc tgtggcaaga ctacctccac acgtggactc atgtaaccca tggccttgtg
     2941 cagtatgcgt gcacacaccc aagactgggt cagataatgg aatgatggga ctatctccgg
     3001 atgcgtacag gttcgtcaca gagcaagaca gacagctgcg actacttcag gcacagattc
     3061 agcgtttgtt ggaagcacag tctctgcagc cctgttcccc taagacaacc actgttgaag
     3121 acacagtgca agctgccaga caaacggagt tggtttccat ggaagcacag tctccccctg
     3181 ctttgcacat gagaaaaagt gtaagcattg ctgtaagcac aggtgccagc ttgttttgga
     3241 atgcggcagg tgatgatcaa gagcctgaat ctcagctgag acaagatgat accaagattt
     3301 ccagtgagga catgaatttt tctgtcgata ttaataatga agtcacaagt actcctggta
     3361 gtgcatcttc attaaaagct gttgatattc ccagttttga agagagcaac actgctgtgg
     3421 aagaatttaa tcagcaactt tctatatcca gctcttctcc acttgtgaga aaagaacctg
     3481 atgtgcctgt attctttcca aatcctctgc tggcggagag tgtaagcatg tgcttccaaa
     3541 gtggaccaac agagggcgcc actaatagct ctgtaacatc aggggaaccc aaaactgagc
     3601 aagtaatgca acccttgcct catcaaccat ctgataacca gaaacgattc caggatgtgt
     3661 tgggtcaagg gaaccaccta ttgaataact cccacaagga aactgagcag ccatctacca
     3721 aagcagtaat catcagtcac gaatgcacca gaatgcagaa tgtttaccat actaaaaaaa
     3781 aaaaccatga ttcagaacca gtggacaaag attgtgttct taatgcaacc cttaagcaac
     3841 taagaagcct tggagtaaaa attgattctc ctactaaaat gaagaaaaat gtacataaag
     3901 tggatcatgc cagtgtgttg gcatgcatca gccctgaagc agtgatctct ggattaaact
     3961 gcatgtcatt tgctaacgtt ggcatgagtg gcttaagccc caacggtgtg gatttgagca
     4021 tggaggcaaa tgctatagct ctgaaatatt taaatgaaaa tcagctgtca caactgtctc
     4081 tcactcgatc aaaccaaaat aactgtgact catcttttag tcttctacat attaatacag
     4141 acagaaacac agtgggcctt agtttaattt caccaaacaa catgtcattt gcaaccaaaa
     4201 aatacatgaa gagatatgga ctgattcaaa gcaatgacaa tagtgaagat gaagaggagc
     4261 ctccaaacaa tacagatacc aagagtgaac acttagtgaa tcaaaacctt acatgcatag
     4321 ctgaacaact tgattgtcag aaagagcctt ctagcaatgc ttgtgaggta actacttgtt
     4381 gtaactgtga ctccatgggc acccacacag atatgccagt attgagaaat attacaaatg
     4441 aagttgttca gccaaaagca acaccacagt tgaatgaaaa cccagatttc ttgttaaaga
     4501 accttaaatc aagtcctgca gtgaaactcc gaactggaaa agcagagttc atccaacatc
     4561 ctgagaaaga aaatgtaagg gacactccga tttttcctga aagcttgaaa ccttctgaca
     4621 ctttaaagca aatgaatagt atgaattcag taggcacctt cttagacgtg aagcgtctca
     4681 gacagttgcc aaaattattt taaactttta attcccccgc cctcctgatg tgaggatggg
     4741 atgtctcctg aagatactta tggaagccag agccttttga tagttttgga attcctagtc
     4801 attctaggga tcactctttc ttggtagcag ctgatggcaa agagctgaac aagtgacctg
     4861 attgtctatg agatggctgg ctattaggag ggctaaatgc cctttgttca aatagtggcg
     4921 ttcagcatca ctggattttt ttttttttta aacaaatcct aagatcagtt atttcaacaa
     4981 atttagataa gcagatgcta tccaactatg aatctgaatt gctcttttat actgtacatt
     5041 ttgaaaagtg agtctgtttt cctagcattt tgcatctacc cagcatcacc aaaagaatat
     5101 aaagttatca tgaccctgag taaattagct aaatcaaccc ctattgaatt taaggggaaa
     5161 gttttatttt taaaagtaac ttaagatctt ttatacaagg agtatagatg ttgtcttaag
     5221 atgcatattt gttaaatact gtggaagtaa aacttttgca ctcttgtggg ttggtgttaa
     5281 tgtaacattt tcaacatata gcactagcta tcacataata agaaaattac tgagtatgag
     5341 tgtgttttat aaactttgtg agtttttcag atgttttaat attttttaat ggaacttaat
     5401 aaaaatgtct agatgga
//
LOCUS       XM_032607282            4215 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus STIL centriolar assembly protein (STIL),
            transcript variant X3, mRNA.
ACCESSION   XM_032607282
VERSION     XM_032607282.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4215
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4215
                     /gene="STIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741162"
     CDS             139..3501
                     /gene="STIL"
                     /codon_start=1
                     /product="SCL-interrupting locus protein isoform X3"
                     /protein_id="XP_032463173.1"
                     /db_xref="GeneID:116741162"
                     /translation="MQMTSIQLLRESLDTVDFDLDWAAVTLANTFKCTPVKPIPIIPT
                     ALARNLSSNLNISQVQGTYKYGYLTMDETRKLLLLLESDPKIFSLPLVGIWLSGIIHI
                     YSPQVWACCLRYMFSSSIQERVFSESGNFIIVLYSVTHKDPEFYECLPCDGRLPDLRF
                     QLLTSKETLHLFKNVEPSDKNPVYFELSAEGQNAEREFFNKVSKNLSIKRSSQKLPPG
                     KMPISDHDSGVEDEDVSPRPIPSPHPVSQKVSKIQPSVPELSLVLDGNFIESNPVPNP
                     LEMVNNENPPLLINHSEHFEPLQPQLYDEKHSPEVEAGEPSLRGLPNQLNQDTAPLRH
                     CKVRRPSTCKKGNPHIRSSVKPSSFNGPSLEASEKLQTVSAGNVHKEEYPVRSSTFNS
                     RQSSFAPQSHPHNFGFSPHNSGRPMEFQIPTPPPPSYYSTSVCNCFQHHGRIQYSPIN
                     SWQGMNTVGSTQDLQSEALQKHSLFHPSGCPAQDHNAFCSSSRPVALRPQGNMGGCSS
                     HSNVEPSPVARLPPHVDSCNPWPCAVCVHTPKTGSDNGMMGLSPDAYRFVTEQDRQLR
                     LLQAQIQRLLEAQSLQPCSPKTTTVEDTVQAARQTELVSMEAQSPPALHMRKSVSIAV
                     STGASLFWNAAGDDQEPESQLRQDDTKISSEDMNFSVDINNEVTSTPGSASSLKAVDI
                     PSFEESNTAVEEFNQQLSISSSSSPLVRKEPDVPVFFPNPLLAESVSMCFQSGPTEGA
                     TNSSVTSGEPKTEQVMQPLPHQPSDNQKRFQDVLGQGNHLLNNSHKETEQPSTKAVII
                     SHECTRMQNVYHTKKKNHDSEPVDKDCVLNATLKQLRSLGVKIDSPTKMKKNVHKVDH
                     ASVLACISPEAVISGLNCMSFANVGMSGLSPNGVDLSMEANAIALKYLNENQLSQLSL
                     TRSNQNNCDSSFSLLHINTDRNTVGLSLISPNNMSFATKKYMKRYGLIQSNDNSEDEE
                     EPPNNTDTKSEHLVNQNLTCIAEQLDCQKEPSSNACEVTTCCNCDSMGTHTDMPVLRN
                     ITNEVVQPKATPQLNENPDFLLKNLKSSPAVKLRTGKAEFIQHPEKENVRDTPIFPES
                     LKPSDTLKQMNSMNSVGTFLDVKRLRQLPKLF"
     misc_feature    <166..939
                     /gene="STIL"
                     /note="SCL-interrupting locus protein N-terminus; Region:
                     STIL_N; pfam15253"
                     /db_xref="CDD:464593"
ORIGIN      
        1 caatagatcg ttttgatcct ggtcgagagg tacctgaatg cttagaaaga acccctactg
       61 cttctcttcc tggggacttt gtgatccctt gcacaattca cactcaagga ctttgttcaa
      121 gagaaataat agtgcacaat gcagatgact tcaattcagc ttttaaggga gagtttggac
      181 actgtggatt ttgacttgga ttgggcagca gtaactctag caaatacctt taaatgcaca
      241 cctgtgaagc ccatccccat tattccaaca gctctggcaa gaaacttgag cagtaatctg
      301 aatatttctc aagttcaagg tacctataaa tatggatatc ttaccatgga tgagacacgc
      361 aaattgttac ttttgctgga atctgatccc aagatttttt ctctcccatt agtgggaatc
      421 tggctgtctg gaattataca tatctatagt cctcaggtgt gggcttgctg cttgcgatac
      481 atgttcagtt cttctattca agaaagggtt ttttcagaat ctggaaattt cattatagtt
      541 ctctattctg tgacacataa ggatcctgag ttttatgaat gcctcccttg tgatggcagg
      601 ttacctgacc ttcgattcca gctactaact agtaaggaaa cattacatct tttcaaaaat
      661 gttgaacctt ctgacaaaaa cccagtctat tttgaactga gtgctgaagg ccagaatgca
      721 gaaagagagt tttttaacaa agtttccaag aatctttcaa ttaagaggtc ttctcaaaag
      781 ttacctccag ggaaaatgcc aataagtgat catgactctg gtgttgaaga tgaagatgtt
      841 tctccaagac caattcctag tcctcatcca gtgagtcaga aggtttctaa gatccagcca
      901 tcagttcctg aactttcact tgtattggat ggcaacttca tagaatcaaa ccctgtgcct
      961 aacccactgg aaatggtgaa taatgaaaat cctcctttat tgattaacca ttctgaacac
     1021 tttgagccat tgcagccgca gctttatgat gagaaacaca gcccagaagt tgaagctgga
     1081 gagccttcct tgagagggct accaaatcaa ttaaaccagg acactgctcc tttgagacac
     1141 tgcaaagtaa gacggccatc tacctgtaag aaagggaacc cccatatcag gagcagtgtt
     1201 aaaccatctt cttttaatgg accatctctt gaggcatctg aaaagcttca aacagtttct
     1261 gctggaaatg tacacaaaga agagtatcct gtaagatcct ccacatttaa ttccaggcag
     1321 tcttcctttg ccccacagtc ccacccacac aattttggtt tttcacccca taattcagga
     1381 agaccaatgg aatttcagat acctactccc ccaccaccat cttactattc cacaagtgtt
     1441 tgcaattgtt ttcagcatca tggccgtatt caatatagtc caataaattc ttggcaagga
     1501 atgaatacag taggatccac tcaagacctc cagtctgaag cccttcaaaa acattcatta
     1561 tttcatccaa gtggatgtcc agctcaggat cataatgcat tctgttcctc aagtaggcct
     1621 gtagccttga gacctcaggg aaacatgggg ggttgttctt cccacagcaa tgtagaacca
     1681 tcgcctgtgg caagactacc tccacacgtg gactcatgta acccatggcc ttgtgcagta
     1741 tgcgtgcaca cacccaagac tgggtcagat aatggaatga tgggactatc tccggatgcg
     1801 tacaggttcg tcacagagca agacagacag ctgcgactac ttcaggcaca gattcagcgt
     1861 ttgttggaag cacagtctct gcagccctgt tcccctaaga caaccactgt tgaagacaca
     1921 gtgcaagctg ccagacaaac ggagttggtt tccatggaag cacagtctcc ccctgctttg
     1981 cacatgagaa aaagtgtaag cattgctgta agcacaggtg ccagcttgtt ttggaatgcg
     2041 gcaggtgatg atcaagagcc tgaatctcag ctgagacaag atgataccaa gatttccagt
     2101 gaggacatga atttttctgt cgatattaat aatgaagtca caagtactcc tggtagtgca
     2161 tcttcattaa aagctgttga tattcccagt tttgaagaga gcaacactgc tgtggaagaa
     2221 tttaatcagc aactttctat atccagcagc tcttctccac ttgtgagaaa agaacctgat
     2281 gtgcctgtat tctttccaaa tcctctgctg gcggagagtg taagcatgtg cttccaaagt
     2341 ggaccaacag agggcgccac taatagctct gtaacatcag gggaacccaa aactgagcaa
     2401 gtaatgcaac ccttgcctca tcaaccatct gataaccaga aacgattcca ggatgtgttg
     2461 ggtcaaggga accacctatt gaataactcc cacaaggaaa ctgagcagcc atctaccaaa
     2521 gcagtaatca tcagtcacga atgcaccaga atgcagaatg tttaccatac taaaaaaaaa
     2581 aaccatgatt cagaaccagt ggacaaagat tgtgttctta atgcaaccct taagcaacta
     2641 agaagccttg gagtaaaaat tgattctcct actaaaatga agaaaaatgt acataaagtg
     2701 gatcatgcca gtgtgttggc atgcatcagc cctgaagcag tgatctctgg attaaactgc
     2761 atgtcatttg ctaacgttgg catgagtggc ttaagcccca acggtgtgga tttgagcatg
     2821 gaggcaaatg ctatagctct gaaatattta aatgaaaatc agctgtcaca actgtctctc
     2881 actcgatcaa accaaaataa ctgtgactca tcttttagtc ttctacatat taatacagac
     2941 agaaacacag tgggccttag tttaatttca ccaaacaaca tgtcatttgc aaccaaaaaa
     3001 tacatgaaga gatatggact gattcaaagc aatgacaata gtgaagatga agaggagcct
     3061 ccaaacaata cagataccaa gagtgaacac ttagtgaatc aaaaccttac atgcatagct
     3121 gaacaacttg attgtcagaa agagccttct agcaatgctt gtgaggtaac tacttgttgt
     3181 aactgtgact ccatgggcac ccacacagat atgccagtat tgagaaatat tacaaatgaa
     3241 gttgttcagc caaaagcaac accacagttg aatgaaaacc cagatttctt gttaaagaac
     3301 cttaaatcaa gtcctgcagt gaaactccga actggaaaag cagagttcat ccaacatcct
     3361 gagaaagaaa atgtaaggga cactccgatt tttcctgaaa gcttgaaacc ttctgacact
     3421 ttaaagcaaa tgaatagtat gaattcagta ggcaccttct tagacgtgaa gcgtctcaga
     3481 cagttgccaa aattatttta aacttttaat tcccccgccc tcctgatgtg aggatgggat
     3541 gtctcctgaa gatacttatg gaagccagag ccttttgata gttttggaat tcctagtcat
     3601 tctagggatc actctttctt ggtagcagct gatggcaaag agctgaacaa gtgacctgat
     3661 tgtctatgag atggctggct attaggaggg ctaaatgccc tttgttcaaa tagtggcgtt
     3721 cagcatcact ggattttttt tttttttaaa caaatcctaa gatcagttat ttcaacaaat
     3781 ttagataagc agatgctatc caactatgaa tctgaattgc tcttttatac tgtacatttt
     3841 gaaaagtgag tctgttttcc tagcattttg catctaccca gcatcaccaa aagaatataa
     3901 agttatcatg accctgagta aattagctaa atcaacccct attgaattta aggggaaagt
     3961 tttattttta aaagtaactt aagatctttt atacaaggag tatagatgtt gtcttaagat
     4021 gcatatttgt taaatactgt ggaagtaaaa cttttgcact cttgtgggtt ggtgttaatg
     4081 taacattttc aacatatagc actagctatc acataataag aaaattactg agtatgagtg
     4141 tgttttataa actttgtgag tttttcagat gttttaatat tttttaatgg aacttaataa
     4201 aaatgtctag atgga
//
LOCUS       XM_032607292            4562 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus STIL centriolar assembly protein (STIL),
            transcript variant X4, mRNA.
ACCESSION   XM_032607292
VERSION     XM_032607292.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4562
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4562
                     /gene="STIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741162"
     CDS             840..3848
                     /gene="STIL"
                     /codon_start=1
                     /product="SCL-interrupting locus protein isoform X4"
                     /protein_id="XP_032463183.1"
                     /db_xref="GeneID:116741162"
                     /translation="MEPTYPLTGTQMNTRFSSSRMVPFYFPPSKCALWNPMPIGDYIY
                     LHLNYHRHLLFFRNPKLVVTEKTIRLACRHAKQNKENLPCFLLGSLTVDEDEESVTLT
                     IDRFDPGREVPECLERTPTASLPGDFVIPCTIHTQGLCSREIIVHNADDFNSAFKALQ
                     HHVCSKDSLDCGKLLSLRAHITSRESLDTVDFDLDWAAVTLANTFKCTPVKPIPIIPT
                     ALARNLSSNLNISQVQGTYKYGYLTMDETRKLLLLLESDPKIFSLPLVGIWLSGIIHI
                     YSPQVWACCLRYMFSSSIQERVFSESGNFIIVLYSVTHKDPEFYECLPCDGRLPDLRF
                     QLLTSKETLHLFKNVEPSDKNPVYFELSAEGQNAEREFFNKVSKNLSIKRSSQKLPPG
                     KMPISDHDSGVEDEDVSPRPIPSPHPVSQKVSKIQPSVPELSLVLDGNFIESNPVPNP
                     LEMIQRLLEAQSLQPCSPKTTTVEDTVQAARQTELVSMEAQSPPALHMRKSVSIAVST
                     GASLFWNAAGDDQEPESQLRQDDTKISSEDMNFSVDINNEVTSTPGSASSLKAVDIPS
                     FEESNTAVEEFNQQLSISSSSSPLVRKEPDVPVFFPNPLLAESVSMCFQSGPTEGATN
                     SSVTSGEPKTEQVMQPLPHQPSDNQKRFQDVLGQGNHLLNNSHKETEQPSTKAVIISH
                     ECTRMQNVYHTKKKNHDSEPVDKDCVLNATLKQLRSLGVKIDSPTKMKKNVHKVDHAS
                     VLACISPEAVISGLNCMSFANVGMSGLSPNGVDLSMEANAIALKYLNENQLSQLSLTR
                     SNQNNCDSSFSLLHINTDRNTVGLSLISPNNMSFATKKYMKRYGLIQSNDNSEDEEEP
                     PNNTDTKSEHLVNQNLTCIAEQLDCQKEPSSNACEVTTCCNCDSMGTHTDMPVLRNIT
                     NEVVQPKATPQLNENPDFLLKNLKSSPAVKLRTGKAEFIQHPEKENVRDTPIFPESLK
                     PSDTLKQMNSMNSVGTFLDVKRLRQLPKLF"
     misc_feature    936..2162
                     /gene="STIL"
                     /note="SCL-interrupting locus protein N-terminus; Region:
                     STIL_N; pfam15253"
                     /db_xref="CDD:464593"
ORIGIN      
        1 cttgaacaag tcgacacacg aataaataaa tgcaaatagc aatatcggct ttgaaggaac
       61 caaaaggagg aataacaaga gatgaatgta atttggggaa aaaccttgag aacaaaagga
      121 gtccaaggaa tgagtcttag tgaacagacc tttaaaagtt ggagagagaa ggaggaacct
      181 gagaaggcag agccagaaag ggtggatgca tattcagaac aagacagcct acaaatgcag
      241 cacagacttc aagacactcc cacgttgctc aagaaactaa caaaagtcta gagaaacgga
      301 tttggtacgc ttctagtcgc cgagcgagga ccagggcaac gagcacttcc ggtttcctct
      361 gccatctcat ccgccaggct gggcttttca ctgcgcgtgc gcaaagcccg ccccaccccg
      421 gaacttaacc gttgacgaaa ttgaagtgtt taaatcctcc ggaatctaat cctggatcgc
      481 gggtggcgcc ctcctttctc cacggaagct tgggattggt cggcatggga ccggtgcggg
      541 gcgctggttg gctggagcgc cagggtgtcg cggcgaccgt gcgtgacgcc ttcggcaccg
      601 cccttgctcc ctgacgggtt gggcttctga ccagtcagca ggcgcggcgc ggacttcggt
      661 ttcgcgagct tctgtttgcc gccttggttc ccgcgacctc aacgtcccag aggcggggcg
      721 gagtcggcgg aggcgctctt tggggccgac ctctgttccg gcccaacaaa caaacctcga
      781 ctcggcggag gttgaggatc ctgagcatgt gaaattgagt caatcattca ccaactatca
      841 tggagcctac gtatcctctc acagggaccc agatgaatac caggttttct tcaagcagga
      901 tggtgccttt ctattttcct ccatcaaaat gtgcgctttg gaacccaatg ccaattggag
      961 attatatcta cttacatctc aattaccaca gacatttgtt atttttcaga aatccaaagc
     1021 ttgtggtaac tgaaaagacc atccgacttg cttgtcgtca tgctaagcag aataaagaaa
     1081 acttgccatg ctttttactt ggttctctca cagtagatga agatgaagaa agtgtgacat
     1141 tgacaataga tcgttttgat cctggtcgag aggtacctga atgcttagaa agaaccccta
     1201 ctgcttctct tcctggggac tttgtgatcc cttgcacaat tcacactcaa ggactttgtt
     1261 caagagaaat aatagtgcac aatgcagatg acttcaattc agcttttaag gctctgcagc
     1321 atcatgtatg tagcaaagat tccttggatt gtggtaaact gctttcccta agagctcata
     1381 tcacttccag ggagagtttg gacactgtgg attttgactt ggattgggca gcagtaactc
     1441 tagcaaatac ctttaaatgc acacctgtga agcccatccc cattattcca acagctctgg
     1501 caagaaactt gagcagtaat ctgaatattt ctcaagttca aggtacctat aaatatggat
     1561 atcttaccat ggatgagaca cgcaaattgt tacttttgct ggaatctgat cccaagattt
     1621 tttctctccc attagtggga atctggctgt ctggaattat acatatctat agtcctcagg
     1681 tgtgggcttg ctgcttgcga tacatgttca gttcttctat tcaagaaagg gttttttcag
     1741 aatctggaaa tttcattata gttctctatt ctgtgacaca taaggatcct gagttttatg
     1801 aatgcctccc ttgtgatggc aggttacctg accttcgatt ccagctacta actagtaagg
     1861 aaacattaca tcttttcaaa aatgttgaac cttctgacaa aaacccagtc tattttgaac
     1921 tgagtgctga aggccagaat gcagaaagag agttttttaa caaagtttcc aagaatcttt
     1981 caattaagag gtcttctcaa aagttacctc cagggaaaat gccaataagt gatcatgact
     2041 ctggtgttga agatgaagat gtttctccaa gaccaattcc tagtcctcat ccagtgagtc
     2101 agaaggtttc taagatccag ccatcagttc ctgaactttc acttgtattg gatggcaact
     2161 tcatagaatc aaaccctgtg cctaacccac tggaaatgat tcagcgtttg ttggaagcac
     2221 agtctctgca gccctgttcc cctaagacaa ccactgttga agacacagtg caagctgcca
     2281 gacaaacgga gttggtttcc atggaagcac agtctccccc tgctttgcac atgagaaaaa
     2341 gtgtaagcat tgctgtaagc acaggtgcca gcttgttttg gaatgcggca ggtgatgatc
     2401 aagagcctga atctcagctg agacaagatg ataccaagat ttccagtgag gacatgaatt
     2461 tttctgtcga tattaataat gaagtcacaa gtactcctgg tagtgcatct tcattaaaag
     2521 ctgttgatat tcccagtttt gaagagagca acactgctgt ggaagaattt aatcagcaac
     2581 tttctatatc cagcagctct tctccacttg tgagaaaaga acctgatgtg cctgtattct
     2641 ttccaaatcc tctgctggcg gagagtgtaa gcatgtgctt ccaaagtgga ccaacagagg
     2701 gcgccactaa tagctctgta acatcagggg aacccaaaac tgagcaagta atgcaaccct
     2761 tgcctcatca accatctgat aaccagaaac gattccagga tgtgttgggt caagggaacc
     2821 acctattgaa taactcccac aaggaaactg agcagccatc taccaaagca gtaatcatca
     2881 gtcacgaatg caccagaatg cagaatgttt accatactaa aaaaaaaaac catgattcag
     2941 aaccagtgga caaagattgt gttcttaatg caacccttaa gcaactaaga agccttggag
     3001 taaaaattga ttctcctact aaaatgaaga aaaatgtaca taaagtggat catgccagtg
     3061 tgttggcatg catcagccct gaagcagtga tctctggatt aaactgcatg tcatttgcta
     3121 acgttggcat gagtggctta agccccaacg gtgtggattt gagcatggag gcaaatgcta
     3181 tagctctgaa atatttaaat gaaaatcagc tgtcacaact gtctctcact cgatcaaacc
     3241 aaaataactg tgactcatct tttagtcttc tacatattaa tacagacaga aacacagtgg
     3301 gccttagttt aatttcacca aacaacatgt catttgcaac caaaaaatac atgaagagat
     3361 atggactgat tcaaagcaat gacaatagtg aagatgaaga ggagcctcca aacaatacag
     3421 ataccaagag tgaacactta gtgaatcaaa accttacatg catagctgaa caacttgatt
     3481 gtcagaaaga gccttctagc aatgcttgtg aggtaactac ttgttgtaac tgtgactcca
     3541 tgggcaccca cacagatatg ccagtattga gaaatattac aaatgaagtt gttcagccaa
     3601 aagcaacacc acagttgaat gaaaacccag atttcttgtt aaagaacctt aaatcaagtc
     3661 ctgcagtgaa actccgaact ggaaaagcag agttcatcca acatcctgag aaagaaaatg
     3721 taagggacac tccgattttt cctgaaagct tgaaaccttc tgacacttta aagcaaatga
     3781 atagtatgaa ttcagtaggc accttcttag acgtgaagcg tctcagacag ttgccaaaat
     3841 tattttaaac ttttaattcc cccgccctcc tgatgtgagg atgggatgtc tcctgaagat
     3901 acttatggaa gccagagcct tttgatagtt ttggaattcc tagtcattct agggatcact
     3961 ctttcttggt agcagctgat ggcaaagagc tgaacaagtg acctgattgt ctatgagatg
     4021 gctggctatt aggagggcta aatgcccttt gttcaaatag tggcgttcag catcactgga
     4081 tttttttttt ttttaaacaa atcctaagat cagttatttc aacaaattta gataagcaga
     4141 tgctatccaa ctatgaatct gaattgctct tttatactgt acattttgaa aagtgagtct
     4201 gttttcctag cattttgcat ctacccagca tcaccaaaag aatataaagt tatcatgacc
     4261 ctgagtaaat tagctaaatc aacccctatt gaatttaagg ggaaagtttt atttttaaaa
     4321 gtaacttaag atcttttata caaggagtat agatgttgtc ttaagatgca tatttgttaa
     4381 atactgtgga agtaaaactt ttgcactctt gtgggttggt gttaatgtaa cattttcaac
     4441 atatagcact agctatcaca taataagaaa attactgagt atgagtgtgt tttataaact
     4501 ttgtgagttt ttcagatgtt ttaatatttt ttaatggaac ttaataaaaa tgtctagatg
     4561 ga
//
LOCUS       XM_032607299            2293 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus STIL centriolar assembly protein (STIL),
            transcript variant X5, mRNA.
ACCESSION   XM_032607299
VERSION     XM_032607299.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2293
                     /gene="STIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741162"
     CDS             185..1579
                     /gene="STIL"
                     /codon_start=1
                     /product="SCL-interrupting locus protein isoform X5"
                     /protein_id="XP_032463190.1"
                     /db_xref="GeneID:116741162"
                     /translation="MNFSVDINNEVTSTPGSASSLKAVDIPSFEESNTAVEEFNQQLS
                     ISSSSSPLVRKEPDVPVFFPNPLLAESVSMCFQSGPTEGATNSSVTSGEPKTEQVMQP
                     LPHQPSDNQKRFQDVLGQGNHLLNNSHKETEQPSTKAVIISHECTRMQNVYHTKKKNH
                     DSEPVDKDCVLNATLKQLRSLGVKIDSPTKMKKNVHKVDHASVLACISPEAVISGLNC
                     MSFANVGMSGLSPNGVDLSMEANAIALKYLNENQLSQLSLTRSNQNNCDSSFSLLHIN
                     TDRNTVGLSLISPNNMSFATKKYMKRYGLIQSNDNSEDEEEPPNNTDTKSEHLVNQNL
                     TCIAEQLDCQKEPSSNACEVTTCCNCDSMGTHTDMPVLRNITNEVVQPKATPQLNENP
                     DFLLKNLKSSPAVKLRTGKAEFIQHPEKENVRDTPIFPESLKPSDTLKQMNSMNSVGT
                     FLDVKRLRQLPKLF"
ORIGIN      
        1 agaacagcag ttttcaaaac acatatacac cccaaatcgt atttagaacc ttgataggta
       61 aaacacatca tttgagagcc acacctcttg aagaggtgcc agcttgtttt ggaatgcggc
      121 aggtgatgat caagagcctg aatctcagct gagacaagat gataccaaga tttccagtga
      181 ggacatgaat ttttctgtcg atattaataa tgaagtcaca agtactcctg gtagtgcatc
      241 ttcattaaaa gctgttgata ttcccagttt tgaagagagc aacactgctg tggaagaatt
      301 taatcagcaa ctttctatat ccagcagctc ttctccactt gtgagaaaag aacctgatgt
      361 gcctgtattc tttccaaatc ctctgctggc ggagagtgta agcatgtgct tccaaagtgg
      421 accaacagag ggcgccacta atagctctgt aacatcaggg gaacccaaaa ctgagcaagt
      481 aatgcaaccc ttgcctcatc aaccatctga taaccagaaa cgattccagg atgtgttggg
      541 tcaagggaac cacctattga ataactccca caaggaaact gagcagccat ctaccaaagc
      601 agtaatcatc agtcacgaat gcaccagaat gcagaatgtt taccatacta aaaaaaaaaa
      661 ccatgattca gaaccagtgg acaaagattg tgttcttaat gcaaccctta agcaactaag
      721 aagccttgga gtaaaaattg attctcctac taaaatgaag aaaaatgtac ataaagtgga
      781 tcatgccagt gtgttggcat gcatcagccc tgaagcagtg atctctggat taaactgcat
      841 gtcatttgct aacgttggca tgagtggctt aagccccaac ggtgtggatt tgagcatgga
      901 ggcaaatgct atagctctga aatatttaaa tgaaaatcag ctgtcacaac tgtctctcac
      961 tcgatcaaac caaaataact gtgactcatc ttttagtctt ctacatatta atacagacag
     1021 aaacacagtg ggccttagtt taatttcacc aaacaacatg tcatttgcaa ccaaaaaata
     1081 catgaagaga tatggactga ttcaaagcaa tgacaatagt gaagatgaag aggagcctcc
     1141 aaacaataca gataccaaga gtgaacactt agtgaatcaa aaccttacat gcatagctga
     1201 acaacttgat tgtcagaaag agccttctag caatgcttgt gaggtaacta cttgttgtaa
     1261 ctgtgactcc atgggcaccc acacagatat gccagtattg agaaatatta caaatgaagt
     1321 tgttcagcca aaagcaacac cacagttgaa tgaaaaccca gatttcttgt taaagaacct
     1381 taaatcaagt cctgcagtga aactccgaac tggaaaagca gagttcatcc aacatcctga
     1441 gaaagaaaat gtaagggaca ctccgatttt tcctgaaagc ttgaaacctt ctgacacttt
     1501 aaagcaaatg aatagtatga attcagtagg caccttctta gacgtgaagc gtctcagaca
     1561 gttgccaaaa ttattttaaa cttttaattc ccccgccctc ctgatgtgag gatgggatgt
     1621 ctcctgaaga tacttatgga agccagagcc ttttgatagt tttggaattc ctagtcattc
     1681 tagggatcac tctttcttgg tagcagctga tggcaaagag ctgaacaagt gacctgattg
     1741 tctatgagat ggctggctat taggagggct aaatgccctt tgttcaaata gtggcgttca
     1801 gcatcactgg attttttttt tttttaaaca aatcctaaga tcagttattt caacaaattt
     1861 agataagcag atgctatcca actatgaatc tgaattgctc ttttatactg tacattttga
     1921 aaagtgagtc tgttttccta gcattttgca tctacccagc atcaccaaaa gaatataaag
     1981 ttatcatgac cctgagtaaa ttagctaaat caacccctat tgaatttaag gggaaagttt
     2041 tatttttaaa agtaacttaa gatcttttat acaaggagta tagatgttgt cttaagatgc
     2101 atatttgtta aatactgtgg aagtaaaact tttgcactct tgtgggttgg tgttaatgta
     2161 acattttcaa catatagcac tagctatcac ataataagaa aattactgag tatgagtgtg
     2221 ttttataaac tttgtgagtt tttcagatgt tttaatattt tttaatggaa cttaataaaa
     2281 atgtctagat gga
//
LOCUS       XR_004346069            6929 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus STIL centriolar assembly protein (STIL),
            transcript variant X6, misc_RNA.
ACCESSION   XR_004346069
VERSION     XR_004346069.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6929
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6929
                     /gene="STIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741162"
     misc_RNA        1..6929
                     /gene="STIL"
                     /product="STIL centriolar assembly protein, transcript
                     variant X6"
                     /db_xref="GeneID:116741162"
ORIGIN      
        1 ttgaactctg gttttcagta atctgtgggc tttagggccg cagttttgaa ttatttttgg
       61 ttacagaccc ctttgaatat ctgatagcca tgaatctcat tccctataag gaaaaatact
      121 tttatacata catgcaacat tttgcaccca atttcagggc atttgtatct ctcttgtctc
      181 tgaagtctac ctgtatacct tagattaaga aaaagactaa taatggcatt tattaaaatc
      241 ttgctctgcc aggttttgtg ctaagcactt tgcatacatt gtttttattt aatcctcaca
      301 acaaacccat gaggagtagg tactattatt atccccctct tttttttttt aaatgaggaa
      361 actagcatag agagatgaac caacccaaag ttatatagtt ggtaaatggt atagccaata
      421 tttaaacctg aaatgatttc tactctgtac tgcaaggaag taaacctgaa gtagtgtagg
      481 ttgggcttta aaggtacaat ggactactta gagcaaaaag aaatagctaa cattgagcac
      541 ttaaaataag ccaggaattt ttctaggcat tttacatata ttgactcata ttcagtatag
      601 ctctaccagg agatactgat gttattctgt ttaacagctg aggaaactga ggcacagaga
      661 cattaaataa cttgatcaag gtcacacagc cagcaaattc tgaagccagg tttcagacct
      721 aagcagctga tttccaggct ttgcttttaa cccttatatc ataccgcctc tcaccaattg
      781 gtaaataata aatatattag atatagaggc atagataact tgacagttgg tcacttacta
      841 cctttgtgac cttgaataca tttcttaatt tcagactgtc ctcatttcaa aaaagggaga
      901 ttaaaaatcc ttatagatat gagctcaaat cagacaaaga tttgaaagca aatagctaag
      961 aatgtggtgg ataaagcact acatcattca gtttctacta gtataagctt tgaaatcagc
     1021 cacacttaga ttcaaattcc agctctgcta cttagttgct gtatcaagtt ataaaagcta
     1081 cagtttgtta tctataaagt ggacaataaa gtgtttttgg aacagtttta gtgagaaata
     1141 ttgtacatgt aaagtggcca gtaggatgcc tggtacatag taggtgatca gtaaatgggc
     1201 taatatatgt atatttttta ctgcaattga cttcttttta aaaaaaaaaa tttttttttt
     1261 aatttattta tttggctgtg ctgagtctta gttgcggcac gcgggatcct ccgctgcagt
     1321 gcacgggctt ctctctagtt gtggcccgag tgctcattag ttgagggcat gggagcttag
     1381 ttgccccgag gcatggggga tcttagttcc ccaacccaga gatcgaacct gcatcccctg
     1441 catcggaagg cggattctta accactggac cattaggaaa gtccctgggg ctaatatttt
     1501 agttgagaag ttttatcaga tgaaacatga aagtaagatc tagaacaaga tattcttagt
     1561 gcatgatatg ataaatattt tttcagttca actatttcat aatctactac catgcaaatg
     1621 cacttttgta ggtagctcac tgtcagagct ttcttgcttt aattacatgt gattaaaaac
     1681 tctgtgatga tatcctatat gatttaacat tgaaaccttg ctttacattg cttgcgtgat
     1741 ctttgtggag ggattattaa tgatgtcctt ttgatgcttc actaattaaa tttatgtgtg
     1801 ggacttccct gtccatccag tggttgagac tccacgctta cactgcaggg ggcacaggtt
     1861 cgatccctgg tgcctgatgc cacgtggcac tgccaaagaa acccccaaaa aacacagaac
     1921 aataacataa aaaactcatg tgatagggcc caagatacca aatttgaaaa ccctgaaaag
     1981 tttttgtgct tttcatgatt ttttaagtgt tatctagaaa tcagttcaga aggatggata
     2041 ttaattttaa atttaaatgt aaatacatgg tttatattca tttttcagtt acttaaagaa
     2101 gattatatag aattgatatt cccggttctt tttaaaaaga ctcgcgtgta tataaatata
     2161 tatatggata ggataaaaag gacagaaagt catacctaaa ttttgagtgc ttattctctt
     2221 gatagtagag ttacaagtga tttttctttc ctttttactt tttaaaaata tttttcaagc
     2281 cttctaaaat tacaaaagta atctgaaaac cctatcattt acagttaaac tgtttcttgt
     2341 aaaatttcta ctgtttttca ttgtgctttg atttaaaaaa aatttttttt ttaaggtttt
     2401 cttcaagcag gatggtgcct ttctattttc ctccatcaaa atgtgcgctt tggaacccaa
     2461 tgccaattgg agattatatc tacttacatc tcaattacca cagaaatcca aagcttgtgg
     2521 taactgaaaa gaccatccga cttgcttgtc gtcatgctaa gcagaataaa gaaaacttgc
     2581 catgcttttt acttggttct ctcacagtag atgaagatga agaaagtgtg acattgacaa
     2641 tagatcgttt tgatcctggt cgagaggtac ctgaatgctt agaaagaacc cctactgctt
     2701 ctcttcctgg ggactttgtg atcccttgca caattcacac tcaaggactt tgttcaagag
     2761 aaataatagt gcacaatgca gatgacttca attcagcttt taaggctctg cagcatcatg
     2821 tatgtagcaa agattccttg gattgtggta aactgctttc cctaagagct catatcactt
     2881 ccagggagag tttggacact gtggattttg acttggattg ggcagcagta actctagcaa
     2941 atacctttaa atgcacacct gtgaagccca tccccattat tccaacagct ctggcaagaa
     3001 acttgagcag taatctgaat atttctcaag ttcaaggtac ctataaatat ggatatctta
     3061 ccatggatga gacacgcaaa ttgttacttt tgctggaatc tgatcccaag attttttctc
     3121 tcccattagt gggaatctgg ctgtctggaa ttatacatat ctatagtcct caggtgtggg
     3181 cttgctgctt gcgatacatg ttcagttctt ctattcaaga aagggttttt tcagaatctg
     3241 gaaatttcat tatagttctc tattctgtga cacataagga tcctgagttt tatgaatgcc
     3301 tcccttgtga tggcaggtta cctgaccttc gattccagct actaactagt aaggaaacat
     3361 tacatctttt caaaaatgtt gaaccttctg acaaaaaccc agtctatttt gaactgagtg
     3421 ctgaaggcca gaatgcagaa agagagtttt ttaacaaagt ttccaagaat ctttcaatta
     3481 agaggtcttc tcaaaagtta cctccaggga aaatgccaat aagtgatcat gactctggtg
     3541 ttgaagatga agatgtttct ccaagaccaa ttcctagtcc tcatccagtg agtcagaagg
     3601 tttctaagat ccagccatca gttcctgaac tttcacttgt attggatggc aacttcatag
     3661 aatcaaaccc tgtgcctaac ccactggaaa tggtgaataa tgaaaatcct cctttattga
     3721 ttaaccattc tgaacacttt gagccattgc agccgcagct ttatgatgag aaacacagcc
     3781 cagaagttga agctggagag ccttccttga gagggctacc aaatcaatta aaccaggaca
     3841 ctgctccttt gagacactgc aaagtaagac ggccatctac ctgtaagaaa gggaaccccc
     3901 atatcaggag cagtgttaaa ccatcttctt ttaatggacc atctcttgag gcatctgaaa
     3961 agcttcaaac agtttctgct ggaaatgtac acaaagaaga gtatcctgta agatcctcca
     4021 catttaattc caggcagtct tcctttgccc cacagtccca cccacacaat tttggttttt
     4081 caccccataa ttcaggaaga ccaatggaat ttcagatacc tactccccca ccaccatctt
     4141 actattccac aagtgtttgc aattgttttc agcatcatgg ccgtattcaa tatagtccaa
     4201 taaattcttg gcaaggaatg aatacagtag gatccactca agacctccag tctgaagccc
     4261 ttcaaaaaca ttcattattt catccaagtg gatgtccagc tcaggatcat aatgcattct
     4321 gttcctcaag taggcctgta gccttgagac ctcagggaaa catggggggt tgttcttccc
     4381 acagcaatgt agaaccatcg cctgtggcaa gactacctcc acacgtggac tcatgtaacc
     4441 catggccttg tgcagtatgc gtgcacacac ccaagactgg gtcagataat ggaatgatgg
     4501 gactatctcc ggatgcgtac aggttcgtca cagagcaaga cagacagctg cgactacttc
     4561 aggcacagat tcagcgtttg ttggaagcac agtctctgca gccctgttcc cctaagacaa
     4621 ccactgttga agacacagtg caagctgcca gacaaacgga gttggtttcc atggaagcac
     4681 agtctccccc tgctttgcac atgagaaaaa gtgtaagcat tgctgtaagc acaggtgcca
     4741 gcttgttttg gaatgcggca ggtgatgatc aagagcctga atctcagctg agacaagatg
     4801 ataccaagat ttccagtgag gacatgaatt tttctgtcga tattaataat gaagtcacaa
     4861 gtactcctgg tagtgcatct tcattaaaag ctgttgatat tcccagtttt gaagagagca
     4921 acactgctgt ggaagaattt aatcagcaac tttctatatc cagctcttct ccacttgtga
     4981 gaaaagaacc tgatgtgcct gtattctttc caaatcctct gctggcggag agtgtaagca
     5041 tgtgcttcca aagtggacca acagagggcg ccactaatag ctctgtaaca tcaggggaac
     5101 ccaaaactga gcaagtaatg caacccttgc ctcatcaacc atctgataac cagaaacgat
     5161 tccaggatgt gttgggtcaa gggaaccacc tattgaataa ctcccacaag gaaactgagc
     5221 agccatctac caaagcagta atcatcagtc acgaatgcac cagaatgcag aatgtttacc
     5281 atactaaaaa aaaaaaccat gattcagaac cagtggacaa agattgtgtt cttaatgcaa
     5341 cccttaagca actaagaagc cttggagtaa aaattgattc tcctactaaa atgaagaaaa
     5401 atgtacataa agtggatcat gccagtgtgt tggcatgcat cagccctgaa gcagtgatct
     5461 ctggattaaa ctgcatgtca tttgctaacg ttggcatgag tggcttaagc cccaacggtg
     5521 tggatttgag catggaggca aatgctatag ctctgaaata tttaaatgaa aatcagctgt
     5581 cacaactgtc tctcactcga tcaaaccaaa ataactgtga ctcatctttt agtcttctac
     5641 atattaatac agacagaaac acagtgggcc ttagtttaat ttcaccaaac aacatgtcat
     5701 ttgcaaccaa aaaatacatg aagagatatg gactgattca aagcaatgac aatagtgaag
     5761 atgaagagga gcctccaaac aatacagata ccaagagtga acacttagtg aatcaaaacc
     5821 ttacatgcat agctgaacaa cttgattgtc agaaagagcc ttctagcaat gcttgtgagg
     5881 taactacttg ttgtaactgt gactccatgg gcacccacac agatatgcca gtattgagaa
     5941 atattacaaa tgaagttgtt cagccaaaag caacaccaca gttgaatgaa aacccagatt
     6001 tcttgttaaa gaaccttaaa tcaagtcctg cagtgaaact ccgaactgga aaagcagagt
     6061 tcatccaaca tcctgagaaa gaaaatgtaa gggacactcc gatttttcct gaaagcttga
     6121 aaccttctga cactttaaag caaatgaata gtatgaattc agtaggcacc ttcttagacg
     6181 tgaagcgtct cagacagttg ccaaaattat tttaaacttt taattccccc gccctcctga
     6241 tgtgaggatg ggatgtctcc tgaagatact tatggaagcc agagcctttt gatagttttg
     6301 gaattcctag tcattctagg gatcactctt tcttggtagc agctgatggc aaagagctga
     6361 acaagtgacc tgattgtcta tgagatggct ggctattagg agggctaaat gccctttgtt
     6421 caaatagtgg cgttcagcat cactggattt tttttttttt taaacaaatc ctaagatcag
     6481 ttatttcaac aaatttagat aagcagatgc tatccaacta tgaatctgaa ttgctctttt
     6541 atactgtaca ttttgaaaag tgagtctgtt ttcctagcat tttgcatcta cccagcatca
     6601 ccaaaagaat ataaagttat catgaccctg agtaaattag ctaaatcaac ccctattgaa
     6661 tttaagggga aagttttatt tttaaaagta acttaagatc ttttatacaa ggagtataga
     6721 tgttgtctta agatgcatat ttgttaaata ctgtggaagt aaaacttttg cactcttgtg
     6781 ggttggtgtt aatgtaacat tttcaacata tagcactagc tatcacataa taagaaaatt
     6841 actgagtatg agtgtgtttt ataaactttg tgagtttttc agatgtttta atatttttta
     6901 atggaactta ataaaaatgt ctagatgga
//
LOCUS       XM_032607311             698 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein S21
            (MRPS21), transcript variant X1, mRNA.
ACCESSION   XM_032607311
VERSION     XM_032607311.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..698
                     /gene="MRPS21"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 8 Proteins, and
                     93% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741188"
     CDS             297..560
                     /gene="MRPS21"
                     /codon_start=1
                     /product="28S ribosomal protein S21, mitochondrial"
                     /protein_id="XP_032463202.1"
                     /db_xref="GeneID:116741188"
                     /translation="MAKHLKFIARTVMVQEGNVEGAYRTLNRILTMDGLIEDIKRRRY
                     YEKPCRRRQRESYETCRRIYNMEMARKINFLMRKNRADPWQGC"
     misc_feature    324..494
                     /gene="MRPS21"
                     /note="ribosomal protein S21; Region: S21p; TIGR00030"
                     /db_xref="CDD:129141"
ORIGIN      
        1 ccagtcggct gggcgccgag cgttgaggac cttgtgcggg ggaagggtaa agtgaggcgg
       61 gtgtggcggg agggcgcggt cctcgcgatt ccccccttcc aagcacggag agaccctgtt
      121 cccggctccc accccaaacc gacctgggcc gaggagcggt aattgggagg gagaggggac
      181 gcctgcggcg cgtcccggtc tcccatgatc ggccagataa atctacgtgg ggacgccctg
      241 ctaccgtctg tcttcttccc tatggtcctg cagactgaag acttaaatcc aaggtcatgg
      301 caaaacatct gaagttcatt gccagaactg tgatggtaca ggaagggaat gtggaaggtg
      361 catacaggac tctaaacaga atccttacca tggatgggct cattgaggac ataaagcgac
      421 ggcgatacta cgagaagcct tgccgccggc gacagaggga aagctatgaa acctgccggc
      481 gaatctacaa catggaaatg gctcgcaaga tcaacttctt gatgcgaaag aatcgggcgg
      541 atccgtggca gggctgctga ggcctgtgga taggaggccc catgtgaaaa tccttatcca
      601 gctgtctcca cctctcttct ttctcccacc ccattttctc ttacctttct tacaataaac
      661 tcacatatat gcaagaaggc ctgcatatat agaagcaa
//
LOCUS       XM_032607321             526 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein S21
            (MRPS21), transcript variant X2, mRNA.
ACCESSION   XM_032607321
VERSION     XM_032607321.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..526
                     /gene="MRPS21"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741188"
     CDS             125..388
                     /gene="MRPS21"
                     /codon_start=1
                     /product="28S ribosomal protein S21, mitochondrial"
                     /protein_id="XP_032463212.1"
                     /db_xref="GeneID:116741188"
                     /translation="MAKHLKFIARTVMVQEGNVEGAYRTLNRILTMDGLIEDIKRRRY
                     YEKPCRRRQRESYETCRRIYNMEMARKINFLMRKNRADPWQGC"
     misc_feature    152..322
                     /gene="MRPS21"
                     /note="ribosomal protein S21; Region: S21p; TIGR00030"
                     /db_xref="CDD:129141"
ORIGIN      
        1 cggcgctgga gatcacgcaa cttccgcttc cggtcggggc gggcttccag tcggctgggc
       61 gccgagcgtt gaggaccttg tgcgggggaa gggtcctgca gactgaagac ttaaatccaa
      121 ggtcatggca aaacatctga agttcattgc cagaactgtg atggtacagg aagggaatgt
      181 ggaaggtgca tacaggactc taaacagaat ccttaccatg gatgggctca ttgaggacat
      241 aaagcgacgg cgatactacg agaagccttg ccgccggcga cagagggaaa gctatgaaac
      301 ctgccggcga atctacaaca tggaaatggc tcgcaagatc aacttcttga tgcgaaagaa
      361 tcgggcggat ccgtggcagg gctgctgagg cctgtggata ggaggcccca tgtgaaaatc
      421 cttatccagc tgtctccacc tctcttcttt ctcccacccc attttctctt acctttctta
      481 caataaactc acatatatgc aagaaggcct gcatatatag aagcaa
//
LOCUS       XM_032607329            2863 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus translocase of outer mitochondrial
            membrane 40 like (TOMM40L), transcript variant X1, mRNA.
ACCESSION   XM_032607329
VERSION     XM_032607329.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2863
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2863
                     /gene="TOMM40L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741197"
     CDS             278..1204
                     /gene="TOMM40L"
                     /codon_start=1
                     /product="mitochondrial import receptor subunit TOM40B
                     isoform X1"
                     /protein_id="XP_032463220.1"
                     /db_xref="GeneID:116741197"
                     /translation="MGNTLGLAPMGALPRRSPRREEPLPSPGSFDELHRLCKDVFPAQ
                     MEGVKLVVNKVLSSHFQVAHTVHMSALGLPGYHLHAAYAGDWQLSPTEVFPTVVGDMD
                     SSGSLNAQVLLLLAERLRAKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGE
                     SVIMVAHFLQSLTHRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAH
                     ASYYHKANEQVQVGVEFEANTRLQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLE
                     KKMPPLPVTLALGAFLNHWRNRFHCGFSITVG"
     misc_feature    347..1201
                     /gene="TOMM40L"
                     /note="Translocase of outer mitochondrial membrane 40
                     (Tom40); Region: Porin3_Tom40; cd07305"
                     /db_xref="CDD:132766"
ORIGIN      
        1 cgcccggttc caagatggtg ttcatgacta cgctgggaat gcaacgtgaa gccgcagttc
       61 tgccatcatt caagatggct gcccccatca agatgaccgg ggtgtgcctg ggggaaaggg
      121 gcagcatgat ggaatgagac ggtctagcgt cggaccatgt ggaagtttct gggactgggg
      181 agccggataa tggggggtgg gacccgtgcg gggtagaggg agcaatagcg tcctttccca
      241 ggcgaacccc ggcccctccc ctgacctctg gactgaaatg gggaacacat tgggcctggc
      301 accgatgggg gctttgcccc gccggagccc ccgtcgagag gaacctctcc ccagccctgg
      361 gagcttcgat gagctgcacc ggctatgcaa agatgtattc ccagcacaga tggagggagt
      421 gaagctcgtt gtcaacaagg ttctgagcag ccatttccag gtggctcaca ctgtacacat
      481 gagtgctctg ggcttgccgg gctatcacct ccatgcggcc tatgcagggg actggcaact
      541 tagcccaact gaggtgttcc ccactgtggt cggggacatg gacagcagtg gcagcctcaa
      601 cgcccaggtc ctgctcctct tggcagagcg gctccgagcc aaggctgtct tccagacgca
      661 gcaggccaag ttcctgacgt ggcagtttga tggcgagtat cggggagatg actacacagc
      721 cactctgacc ctaggaaatc ctgacctgat tggggaatcg gtgatcatgg ttgctcactt
      781 cctgcagagc ctcactcatc ggctggtgtt gggaggagag ctagtttatc accggcggcc
      841 aggcgaagag ggggccattt tgacactggc tgggaagtac tcggctgtac actgggtagc
      901 taccttgaat gtgggatcag gtggggccca tgcaagttat taccacaagg caaatgaaca
      961 ggttcaggtt ggagtggagt ttgaggcaaa tacgaggcta caagacacaa ctttctcttt
     1021 tggttaccac ctgactctgc cccaggccaa catggtattt agaggcttgg tggatagtaa
     1081 ctggtgtgtg ggtgctgtgc tggagaagaa gatgcccccc ctgcccgtca ccctcgccct
     1141 tggagccttc cttaatcact ggcgcaacag attccactgt ggcttcagca tcactgtggg
     1201 ctgaggttgt cccagagcca gcccccataa cagctggaac ctctgagtca ggtgccctgg
     1261 ggccaggaac taggcccctc tcaagagccc accttgctgg gtgacctcta ggtcccagga
     1321 gcagagtggg cacaatacat gccctcctca gaactggagc tgccacagag gcagctgctg
     1381 aggcagtggt ttgaggctcc cacctctgcc atcagcccca gtttcatctt cccatactct
     1441 tatggctctg gactaaggga gaagaattaa ggggtctgtc tggctgcatt ttctccccgc
     1501 actcccacct ccttcatttc cttatggatt aaagctccta gcctcttcct cttcagagca
     1561 gaaaaatctg catggcatta gctcccatcc tgttttccat cccagagttt cccaaggctg
     1621 ggaaagaagg gctgaagggc taaatctttg accccagaaa gtggggccca cctattccca
     1681 gacggagctt ctttacctct tagccctgag gcttcctcct tccccatcat ctgtgcttcc
     1741 agagaacaac tttgtcccca tggccacccc tcattctccc cattaccgca tgaagaggca
     1801 gacgttgctt tgatcattca ctgcaaccag tgggctccct gtttactggc tccagcctct
     1861 ggtccgagca ttttcccctt tccagtccag catgtccagg tggtctgggg aaggaggcga
     1921 actgggcctc agctgcaggt ctcctggagc agtggcacca tggtggacag tcccctggat
     1981 gttctcgatt tggtaccaac atgcattgtt aatgcttcgg agatcagcca accggccccc
     2041 agcagcttcg catatagaaa cctttggggt caccagggaa ggagaagaga gataggcagc
     2101 tgagagtctt gtcctgaggc cctgaccccc taaactgcct ctctgtgaag ctaggtctga
     2161 acatgaggga aaatatgctc tgatgtgaca aatgtatcaa aaactccaaa ggtccccagt
     2221 ggggcctcta tctgacactg acttctctca ccatgacgtt tttcttgaac ccagagctca
     2281 gagggccaag tgtgaagaaa gccccagact ttgccagata ttcagctgtg tggaatccga
     2341 ggatctggcc ttctagagca ggttctagaa ggtgggtgtg ttctatggta taaagcaacc
     2401 ctcttctggc caaactggca cattgaggaa taagcaaaac agaagtggag tgtacttcag
     2461 agcctggtta gatcatggac tgttgaacca agggctggcg tcggccatga aactgaatga
     2521 ccataacttc aaggggaatg aaaaattaaa ggaattggac caatggagaa ggaggggaag
     2581 ggccaaggaa agagagtgaa caagattctt gaaagtctgt tttagtctgg aggagttgga
     2641 ttggtgaggt gatggatgtc atcaatctca ggaatgctat tataccgagc ctgtgagcta
     2701 ctactttgca tctctcctga ataaaaaaaa atctgggaaa agtgagatga aacagcagta
     2761 ggagcaattt gaatgccgga actctatgag atgggaggga aggactagac ccccaggggc
     2821 cctggtttcc caaaggaaag gacagtaaaa gcactcatcc tga
//
LOCUS       XM_032607339            2622 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus translocase of outer mitochondrial
            membrane 40 like (TOMM40L), transcript variant X2, mRNA.
ACCESSION   XM_032607339
VERSION     XM_032607339.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2622
                     /gene="TOMM40L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741197"
     CDS             278..1081
                     /gene="TOMM40L"
                     /codon_start=1
                     /product="mitochondrial import receptor subunit TOM40B
                     isoform X2"
                     /protein_id="XP_032463230.1"
                     /db_xref="GeneID:116741197"
                     /translation="MGNTLGLAPMGALPRRSPRREEPLPSPGSFDELHRLCKDVFPAQ
                     MEGVKLVVNKVLSSHFQVAHTVHMSALGLPGYHLHAAYAGDWQLSPTEVFPTVVGDMD
                     SSGSLNAQVLLLLAERLRAKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGE
                     SAVHWVATLNVGSGGAHASYYHKANEQVQVGVEFEANTRLQDTTFSFGYHLTLPQANM
                     VFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLNHWRNRFHCGFSITVG"
     misc_feature    347..1078
                     /gene="TOMM40L"
                     /note="Translocase of outer mitochondrial membrane 40
                     (Tom40); Region: Porin3_Tom40; cd07305"
                     /db_xref="CDD:132766"
ORIGIN      
        1 cgcccggttc caagatggtg ttcatgacta cgctgggaat gcaacgtgaa gccgcagttc
       61 tgccatcatt caagatggct gcccccatca agatgaccgg ggtgtgcctg ggggaaaggg
      121 gcagcatgat ggaatgagac ggtctagcgt cggaccatgt ggaagtttct gggactgggg
      181 agccggataa tggggggtgg gacccgtgcg gggtagaggg agcaatagcg tcctttccca
      241 ggcgaacccc ggcccctccc ctgacctctg gactgaaatg gggaacacat tgggcctggc
      301 accgatgggg gctttgcccc gccggagccc ccgtcgagag gaacctctcc ccagccctgg
      361 gagcttcgat gagctgcacc ggctatgcaa agatgtattc ccagcacaga tggagggagt
      421 gaagctcgtt gtcaacaagg ttctgagcag ccatttccag gtggctcaca ctgtacacat
      481 gagtgctctg ggcttgccgg gctatcacct ccatgcggcc tatgcagggg actggcaact
      541 tagcccaact gaggtgttcc ccactgtggt cggggacatg gacagcagtg gcagcctcaa
      601 cgcccaggtc ctgctcctct tggcagagcg gctccgagcc aaggctgtct tccagacgca
      661 gcaggccaag ttcctgacgt ggcagtttga tggcgagtat cggggagatg actacacagc
      721 cactctgacc ctaggaaatc ctgacctgat tggggaatcg gctgtacact gggtagctac
      781 cttgaatgtg ggatcaggtg gggcccatgc aagttattac cacaaggcaa atgaacaggt
      841 tcaggttgga gtggagtttg aggcaaatac gaggctacaa gacacaactt tctcttttgg
      901 ttaccacctg actctgcccc aggccaacat ggtatttaga ggcttggtgg atagtaactg
      961 gtgtgtgggt gctgtgctgg agaagaagat gccccccctg cccgtcaccc tcgcccttgg
     1021 agccttcctt aatcactggc gcaacagatt ccactgtggc ttcagcatca ctgtgggctg
     1081 aggttgtccc agagccagcc cccataacag ctggaacctc tgagtcaggt gccctggggc
     1141 caggaactag gcccctctca agagcccacc ttgctgggtg acctctaggt cccaggagca
     1201 gagtgggcac aatacatgcc ctcctcagaa ctggagctgc cacagaggca gctgctgagg
     1261 cagtggtttg aggctcccac ctctgccatc agccccagtt tcatcttccc atactcttat
     1321 ggctctggac taagggagaa gaattaaggg gtctgtctgg ctgcattttc tccccgcact
     1381 cccacctcct tcatttcctt atggattaaa gctcctagcc tcttcctctt cagagcagaa
     1441 aaatctgcat ggcattagct cccatcctgt tttccatccc agagtttccc aaggctggga
     1501 aagaagggct gaagggctaa atctttgacc ccagaaagtg gggcccacct attcccagac
     1561 ggagcttctt tacctcttag ccctgaggct tcctccttcc ccatcatctg tgcttccaga
     1621 gaacaacttt gtccccatgg ccacccctca ttctccccat taccgcatga agaggcagac
     1681 gttgctttga tcattcactg caaccagtgg gctccctgtt tactggctcc agcctctggt
     1741 ccgagcattt tcccctttcc agtccagcat gtccaggtgg tctggggaag gaggcgaact
     1801 gggcctcagc tgcaggtctc ctggagcagt ggcaccatgg tggacagtcc cctggatgtt
     1861 ctcgatttgg taccaacatg cattgttaat gcttcggaga tcagccaacc ggcccccagc
     1921 agcttcgcat atagaaacct ttggggtcac cagggaagga gaagagagat aggcagctga
     1981 gagtcttgtc ctgaggccct gaccccctaa actgcctctc tgtgaagcta ggtctgaaca
     2041 tgagggaaaa tatgctctga tgtgacaaat gtatcaaaaa ctccaaaggt ccccagtggg
     2101 gcctctatct gacactgact tctctcacca tgacgttttt cttgaaccca gagctcagag
     2161 ggccaagtgt gaagaaagcc ccagactttg ccagatattc agctgtgtgg aatccgagga
     2221 tctggccttc tagagcaggt tctagaaggt gggtgtgttc tatggtataa agcaaccctc
     2281 ttctggccaa actggcacat tgaggaataa gcaaaacaga agtggagtgt acttcagagc
     2341 ctggttagat catggactgt tgaaccaagg gctggcgtcg gccatgaaac tgaatgacca
     2401 taacttcaag gggaatgaaa aattaaagga attggaccaa tggagaagga ggggaagggc
     2461 caaggaaaga gagtgaacaa gattcttgaa agtctgtttt agtctggagg agttggattg
     2521 gtgaggtgat ggatgtcatc aatctcagga atgctattat accgagcctg tgagctacta
     2581 ctttgcatct ctcctgaata aaaaaaaatc tgggaaaagt ga
//
LOCUS       XM_032607353            1133 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor subfamily 1 group I
            member 3 (NR1I3), mRNA.
ACCESSION   XM_032607353
VERSION     XM_032607353.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 9 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-113               VOSU01000011.1     118381804-118381916 c
            114-114             "N"                1-1
            115-187             VOSU01000011.1     118381731-118381803 c
            188-251             VOSU01000011.1     118380232-118380295 c
            252-252             "N"                1-1
            253-302             VOSU01000011.1     118380182-118380231 c
            303-380             VOSU01000011.1     118378926-118379003 c
            381-381             "N"                1-1
            382-467             VOSU01000011.1     118378840-118378925 c
            468-497             VOSU01000011.1     118378587-118378616 c
            498-498             "N"                1-1
            499-609             VOSU01000011.1     118378476-118378586 c
            610-668             VOSU01000011.1     118378200-118378258 c
            669-670             "NN"               1-2
            671-752             VOSU01000011.1     118378118-118378199 c
            753-800             VOSU01000011.1     118377806-118377853 c
            801-801             "N"                1-1
            802-851             VOSU01000011.1     118377756-118377805 c
            852-895             VOSU01000011.1     118377711-118377754 c
            896-1003            VOSU01000011.1     118377415-118377522 c
            1004-1031           VOSU01000011.1     118376521-118376548 c
            1032-1088           VOSU01000011.1     118376462-118376518 c
            1089-1133           VOSU01000011.1     118376416-118376460 c
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1133
                     /gene="NR1I3"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 7 bases in 6 codons;
                     deleted 4 bases in 3 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     Proteins, and 8% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116741205"
     CDS             81..1133
                     /gene="NR1I3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 7 bases in 6 codons;
                     deleted 4 bases in 3 codons; substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:129..131,aa:OTHER)
                     /transl_except=(pos:336..338,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: nuclear receptor subfamily
                     1 group I member 3"
                     /protein_id="XP_032463244.1"
                     /db_xref="GeneID:116741205"
                     /translation="MAREEDEQGNCXVCRNXATGYPFQALTSEDCKGFFRRTVSKSTG
                     LTCPFAGSWKVNKXPACRLQKCLDAGMKKDMIPSAEARALRXARQAQRRAQRASMQXE
                     EKKLVQTLLGAQTRHVGTMFDQFVQFRPPAHLFIHHQXLSTQFPVLPLLTHFADINTF
                     MVQQIIRLTKDLPLSVCFLLWPMEDQISLLKEAAVEXCHIALNATFCLQTQNFLCGLL
                     PYTEDGPVCLEPTVGLQEEFLEXLFGFHRTLRQLQLQEPEYVFMAATALFSPGKDRPG
                     ITQRAGTDQLQEEIALTLQSYIKGQQQNPRDRFLYAKLLGALADLRSINNACWYQIEN
                     IQGLSTMVPLLQETCS"
     misc_feature    111..308
                     /gene="NR1I3"
                     /note="DNA-binding domain of nuclear receptors is composed
                     of two C4-type zinc fingers; Region: NR_DBD_like; cl02596"
                     /db_xref="CDD:413390"
     misc_feature    order(111..113,120..122,162..164,171..173,219..221,
                     237..239,261..263)
                     /gene="NR1I3"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143512"
     misc_feature    order(141..149,165..170,174..176,180..182,189..191,
                     198..200,255..257,264..266,297..299,306..308)
                     /gene="NR1I3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143512"
     misc_feature    384..1121
                     /gene="NR1I3"
                     /note="The ligand binding domain of nuclear receptors, a
                     family of ligand-activated transcription regulators;
                     Region: NR_LBD; cl11397"
                     /db_xref="CDD:472173"
     misc_feature    order(540..545,552..554,561..566,660..665,672..677,
                     684..686,693..695,804..806)
                     /gene="NR1I3"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132732"
     misc_feature    order(567..569,576..578,588..590,612..614,627..632,
                     636..641,648..653)
                     /gene="NR1I3"
                     /note="coregulator recognition site [active]"
                     /db_xref="CDD:132732"
ORIGIN      
        1 aggtcaaggg tggtccagag ctgactgata acccctctga cgctcagggg cctgtgacgg
       61 ccactgcaac acctgaagcc atggcccgtg aggaggacga gcaggggaat tgtngtgtgt
      121 gcaggaactg agccacaggc tatcccttcc aggccctgac ttctgaggac tgcaagggtt
      181 tcttcaggcg aacagtcagc aaaagcaccg gtctcacgtg cccctttgct ggaagctgga
      241 aggtcaacaa gngcccagcc tgcaggttgc agaagtgcct agatgctggc atgaagaagg
      301 acatgatccc atcggcagaa gcccgggcgt tgcggtaagc aagacaggcc cagcggcggg
      361 cacagcgagc atcgatgcag nctgaggaga aaaagctagt ccagacactg ctgggggccc
      421 aaactcgcca cgtgggcacc atgtttgacc agtttgtgca gttcaggcct cccgctcatc
      481 tgttcatcca tcaccagncg ctgtccaccc agttccctgt actgcctctg ctcacacatt
      541 tcgcagacat caacactttc atggtacagc aaatcatcag gctcaccaag gacctgcccc
      601 tttcggtatg tttcctgctc tggcccatgg aggaccagat ctcccttctc aaggaagcag
      661 ctgtagaann atgtcacatt gcactcaatg ccactttctg tctccaaaca caaaacttcc
      721 tctgcgggct tcttccctac acagaagatg gacccgtgtg cctggaaccc acagtggggc
      781 tccaggaaga gtttttggag nttctcttcg gcttccatag gacactgcgc caactgcagc
      841 tccaggagcc tgagtatgtg ttcatggctg ccacggccct cttctctcct gggaaagacc
      901 ggcctgggat aacccagaga gcggggactg atcagttgca agaggagata gcgctgactc
      961 tgcagagcta tatcaaaggc cagcagcaaa atccccggga ccggtttcta tatgcgaagc
     1021 tgctgggggc cttggctgat ctccgaagca ttaacaatgc atgttggtac caaatcgaga
     1081 acatccaggg actgtccacc atggtgccac tgctccagga gacctgcagc tga
//
LOCUS       XR_004346072            1971 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116741212
            (LOC116741212), transcript variant X1, ncRNA.
ACCESSION   XR_004346072
VERSION     XR_004346072.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1971
                     /gene="LOC116741212"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741212"
     ncRNA           1..1971
                     /ncRNA_class="lncRNA"
                     /gene="LOC116741212"
                     /product="uncharacterized LOC116741212, transcript variant
                     X1"
                     /db_xref="GeneID:116741212"
ORIGIN      
        1 ctgtgagtgt ttctttggca gtgtcttagc tggttgttgt gagtactgat gaaggaagca
       61 atcagcaagt atactgccct agaagtgctg cacgttgttg cgcccgagag ggaagaaaca
      121 ggcaagacac tcgagccacg tgagacaccg ggacaggacg tcggaggctc tgccccgccg
      181 tgtcggctgg taagggctgc cggggaaaca agctctccgg cccctggagc cggcctgctc
      241 acaggtgttg aaggaaaaag gcacacagcc tgggccacgg gtggtttctg gctgggagaa
      301 gcttgcacat aggaatgata atcaccagtg tttatgagca ctttctgtgt gtgaagccct
      361 gtcctaggca tcctaaatgt attatctcag gagtaagagt ctgttgttat ccctgtcttg
      421 cagagaagaa acagaagtac aaagagcaga agtaacaaag gatgggaatt ccctggtggt
      481 ccagtggtta ggactccgcg cttccactac agggagcaca ggttcgatcc ctggttgggg
      541 aactaagatc ccacaaggcg cacagcgtgg ccaaataata ataataataa tggagttttt
      601 tttttttaaa aagtaacaaa ggatgcagtt gatagaaaga gggcccaagc agtctggctc
      661 cagactctgt actctttttt ttctttttaa tttttggccg caccctgcgg catgtgggac
      721 cttagttccc tgaccaggga tcgaacctgc accccctgca ttggaaggca gaatcttaac
      781 cactggactg tcggggaagt ccccagactc tactcttaac cgcgggctcg tgtccttaga
      841 gatgggccta gggtggtgtc accgtccttt ggacccactt tgccgaatga tttgaacgtg
      901 aataccctcc gctctctctc tgcatgaggc aaatttcaga tgcagtcata cgctttggag
      961 aacgttcctg tgtgggtatt aggagatgtg tctgccttga ggagagtttt tctttttagc
     1021 tgaaacgggg cccaggaagt tgataaggat gagaagctcg tggtgttttc tgctctggtg
     1081 gctgatgaga aaggttcctc taagggagct cagctgagac aacagttcgg ttctctgggt
     1141 cccaccagct ccacctaccg atgccagctt tgggtccagt gagctgtgag gccagctgga
     1201 ttaccatggc cacaggaact cgacccaagc caccagaaga tggagaacca agacacagtg
     1261 gtgacacttc caggtcttgg accacgagcc cgggataacc catcaagggg ccctgcactt
     1321 ccccagagtc tgctaaacca gccttgggtc cttgcctttc tgcccttggt gtccgtgctc
     1381 gttgacattg agctgtgagt tccccggttc tctgtcccac tgattttctc cattgttctc
     1441 caatctggtg cttataggaa ttcacccgtg tccccgaggc gaaaccacgt gtcagtggct
     1501 gacgcctctg accccaatga ctaagacaaa gcctccaagg tccaggaagc gatggtttta
     1561 ggctgaagta aagaatgcct accttttcca accaccaacc cttgaacttc taagacaaag
     1621 ggaccacacc cttggattat gatctaacta acctatgaat ttgagttcag tatagtccta
     1681 tagttacaca aggtgctact tctgggagga actggctgaa agaatgctgt gtggtaccct
     1741 ggattggatc ctagaacaga agaaggacat gagtagaaaa actagaaaac ccaagaaaga
     1801 tcttgaagat tggccaatgt taatttctta gttttaacag ctgtaccatg gttgtgtaaa
     1861 acgttaacat ttaaaagaaa ctgggtaaag gatatgaggg aattctctgt gctatccttt
     1921 gtaacttttc tgtaaatcta aaattattcc aaaataaaaa gtttattaaa a
//
LOCUS       XR_004346073            1737 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116741212
            (LOC116741212), transcript variant X2, ncRNA.
ACCESSION   XR_004346073
VERSION     XR_004346073.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1737
                     /gene="LOC116741212"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741212"
     ncRNA           1..1737
                     /ncRNA_class="lncRNA"
                     /gene="LOC116741212"
                     /product="uncharacterized LOC116741212, transcript variant
                     X2"
                     /db_xref="GeneID:116741212"
ORIGIN      
        1 ctgtgagtgt ttctttggca gtgtcttagc tggttgttgt gagtactgat gaaggaagca
       61 atcagcaagt atactgccct agaagtgctg cacgttgttg cgcccgagag ggaagaaaca
      121 ggcaagacac tcgagccacg tgagacaccg ggacaggacg tcggaggctc tgccccgccg
      181 tgtcggctga gaagaaacag aagtacaaag agcagaagta acaaaggatg ggaattccct
      241 ggtggtccag tggttaggac tccgcgcttc cactacaggg agcacaggtt cgatccctgg
      301 ttggggaact aagatcccac aaggcgcaca gcgtggccaa ataataataa taataatgga
      361 gttttttttt tttaaaaagt aacaaaggat gcagttgata gaaagagggc ccaagcagtc
      421 tggctccaga ctctgtactc ttttttttct ttttaatttt tggccgcacc ctgcggcatg
      481 tgggacctta gttccctgac cagggatcga acctgcaccc cctgcattgg aaggcagaat
      541 cttaaccact ggactgtcgg ggaagtcccc agactctact cttaaccgcg ggctcgtgtc
      601 cttagagatg ggcctagggt ggtgtcaccg tcctttggac ccactttgcc gaatgatttg
      661 aacgtgaata ccctccgctc tctctctgca tgaggcaaat ttcagatgca gtcatacgct
      721 ttggagaacg ttcctgtgtg ggtattagga gatgtgtctg ccttgaggag agtttttctt
      781 tttagctgaa acggggccca ggaagttgat aaggatgaga agctcgtggt gttttctgct
      841 ctggtggctg atgagaaagg ttcctctaag ggagctcagc tgagacaaca gttcggttct
      901 ctgggtccca ccagctccac ctaccgatgc cagctttggg tccagtgagc tgtgaggcca
      961 gctggattac catggccaca ggaactcgac ccaagccacc agaagatgga gaaccaagac
     1021 acagtggtga cacttccagg tcttggacca cgagcccggg ataacccatc aaggggccct
     1081 gcacttcccc agagtctgct aaaccagcct tgggtccttg cctttctgcc cttggtgtcc
     1141 gtgctcgttg acattgagct gtgagttccc cggttctctg tcccactgat tttctccatt
     1201 gttctccaat ctggtgctta taggaattca cccgtgtccc cgaggcgaaa ccacgtgtca
     1261 gtggctgacg cctctgaccc caatgactaa gacaaagcct ccaaggtcca ggaagcgatg
     1321 gttttaggct gaagtaaaga atgcctacct tttccaacca ccaacccttg aacttctaag
     1381 acaaagggac cacacccttg gattatgatc taactaacct atgaatttga gttcagtata
     1441 gtcctatagt tacacaaggt gctacttctg ggaggaactg gctgaaagaa tgctgtgtgg
     1501 taccctggat tggatcctag aacagaagaa ggacatgagt agaaaaacta gaaaacccaa
     1561 gaaagatctt gaagattggc caatgttaat ttcttagttt taacagctgt accatggttg
     1621 tgtaaaacgt taacatttaa aagaaactgg gtaaaggata tgagggaatt ctctgtgcta
     1681 tcctttgtaa cttttctgta aatctaaaat tattccaaaa taaaaagttt attaaaa
//
LOCUS       XR_004346074            2667 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116741212
            (LOC116741212), transcript variant X3, ncRNA.
ACCESSION   XR_004346074
VERSION     XR_004346074.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2667
                     /gene="LOC116741212"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741212"
     ncRNA           1..2667
                     /ncRNA_class="lncRNA"
                     /gene="LOC116741212"
                     /product="uncharacterized LOC116741212, transcript variant
                     X3"
                     /db_xref="GeneID:116741212"
ORIGIN      
        1 ctgtgagtgt ttctttggca gtgtcttagc tggttgttgt gagtactgat gaaggaagca
       61 atcagcaagt atactgccct agaagtgctg cacgttgttg cgcccgagag ggaagaaaca
      121 ggcaagacac tcgagccacg tgagacaccg ggacaggacg tcggaggctc tgccccgccg
      181 tgtcggctgg taagggctgc cggggaaaca agctctccgg cccctggagc cggcctgctc
      241 acaggtgttg aaggaaaaag gcacacagcc tgggccacgg gtggtttctg gctgggagaa
      301 gcttgcacat aggaatgata atcaccagtg tttatgagca ctttctgtgt gtgaagccct
      361 gtcctaggca tcctaaatgt attatctcag gagtaagagt ctgttgttat ccctgtcttg
      421 cagagaagaa acagaagtac aaagagcaga agtaacaaag gatgggaatt ccctggtggt
      481 ccagtggtta ggactccgcg cttccactac agggagcaca ggttcgatcc ctggttgggg
      541 aactaagatc ccacaaggcg cacagcgtgg ccaaataata ataataataa tggagttttt
      601 tttttttaaa aagtaacaaa ggatgcagtt gatagaaaga gggcccaagc agtctggctc
      661 cagactctgt actctttttt ttctttttaa tttttggccg caccctgcgg catgtgggac
      721 cttagttccc tgaccaggga tcgaacctgc accccctgca ttggaaggca gaatcttaac
      781 cactggactg tcggggaagt ccccagactc tactcttaac cgcgggctcg tgtccttaga
      841 gatgggccta gggtggtgtc accgtccttt ggacccactt tgccgaatga tttgaacgtg
      901 aataccctcc gctctctctc tgcatgaggc aaatttcaga tgcagtcata cgctttggag
      961 aacgttcctg tgtgggtatt aggagatgtg tctgccttga ggagagtttt tctttttagc
     1021 tgaaacgggg cccaggaagt tgataaggat gagaagctcg tggtgttttc tgctctggtg
     1081 gctgatgaga aaggttcctc taagggagct cagctgagac aacagttcgg ttctctgggt
     1141 cccaccagct ccacctaccg atgccagctt tgggtccagt gagctgtgag gccagctgga
     1201 ttaccatggc cacaggaact cgacccaagc caccagaaga tggagaacca agacacagtg
     1261 gtgacacttc caggaattca cccgtgtccc cgaggcgaaa ccacgtgtca gtggctgacg
     1321 cctctgaccc caatgactaa gacaaagcct ccaaggtcca ggaagcgatg gttttaggct
     1381 gaagtaaaga atgcctacct tttccaacca ccaacccttg aacttctaag acaaagggac
     1441 cacacccttg gattatgatc taactaacct atgaatttga gttcaggtaa aattatttgc
     1501 aaagtaacct cttttcctac ctagctagaa acaagaaaaa tcatccctct ctgacaggca
     1561 gaggtcacct gtagacattc ctggataatc agtcaggaaa cagaaacagc agacagtctc
     1621 tgcttccctg cgggtcttgg ataaaactga tgtctttgtg gcaattgaat tcacttatgc
     1681 agtctttaga gcagatggat agaatatttc tgttgtcttt ctatttgata gtaatagaag
     1741 gatagtggga tatacatcta gctctttacc tccactcctg cagagacagg agggatgatg
     1801 atgtgagttt agaatatact gggccaaaga gagctacttc tctctctctg tctctctgtc
     1861 tctctgtctc tgtctctgtc tctttctctc tctctcacac acacacacac acacacacac
     1921 acacacacac attcgtgtgc gcgcatgcac cctggccccg aatttgggga gttcaaagtc
     1981 cagtaagttg aggatatcca gacccggggc agagtgcact tctgcttttg agaacgaatg
     2041 ggcagattct agtttgtagt tggtgggtcg gagagaggga tcaagaattt catggttgga
     2101 cttggcgttt ggaggcagga gtcagatgca aattttatgt ttttggggaa agtatttgat
     2161 cttcttgact gtgaggcaaa gtgagggtta aaaatatata tttgatttta aaatgtatat
     2221 atatttaata agctctgtgg atcatactaa tatcaatttc ctggtttcag tatagtccta
     2281 tagttacaca aggtgctact tctgggagga actggctgaa aggtacacag gatctctctg
     2341 taccattttt tttttttcaa ttttctgtaa atccatgatt atttcaaaat aaaaagttac
     2401 aacgtatata tttgacagaa tgctgtgtgg taccctggat tggatcctag aacagaagaa
     2461 ggacatgagt agaaaaacta gaaaacccaa gaaagatctt gaagattggc caatgttaat
     2521 ttcttagttt taacagctgt accatggttg tgtaaaacgt taacatttaa aagaaactgg
     2581 gtaaaggata tgagggaatt ctctgtgcta tcctttgtaa cttttctgta aatctaaaat
     2641 tattccaaaa taaaaagttt attaaaa
//
LOCUS       XM_032607382            2801 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tryptophanyl tRNA synthetase 2,
            mitochondrial (WARS2), transcript variant X1, mRNA.
ACCESSION   XM_032607382
VERSION     XM_032607382.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2801
                     /gene="WARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741216"
     CDS             38..1120
                     /gene="WARS2"
                     /codon_start=1
                     /product="tryptophan--tRNA ligase, mitochondrial"
                     /protein_id="XP_032463273.1"
                     /db_xref="GeneID:116741216"
                     /translation="MALHSMRKARECWNFIRALHQGPEAAPAPQKDSVKRIFSGIQPT
                     GIPHLGNYLGAIESWVRLQDEHDSVLYSIVDLHSITVPQDPAILRQSILDMTAALLAC
                     GINPEKSILFQQSQVSEHTQLSWILTCMVRLPRLQHLHQWKAKTAKEKQNGTMGLLTY
                     PVLQAADVLLYKSTHVPVGEDQVQHMELVQDLAQGFNKKYGEFFPVPRSILTSMKKVK
                     SLRDPSAKMSKSDPDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYEPASRGGVSNLV
                     AIHAAVTGLPVEEVVCRSAGIDTARYKLVVADAVIEKFAPIKSEIEKLKTNKDHLEKV
                     LQAGSAKAKELAYPVCQEVKKLVGFL"
     misc_feature    140..1117
                     /gene="WARS2"
                     /note="tryptophanyl-tRNA synthetase; Reviewed; Region:
                     PRK00927"
                     /db_xref="CDD:234866"
ORIGIN      
        1 atgtcactca agtctagacg gctccgccct tctcaagatg gcgctgcact caatgcggaa
       61 ggcgcgtgag tgctggaact tcatccgggc acttcatcaa ggacccgaag ctgctcccgc
      121 tccccagaaa gattccgtga agcgaatatt ttctggcatt cagcctacag gaatccccca
      181 cctcggcaat tacctgggag ccattgagag ctgggtgaga ttacaggatg agcatgactc
      241 cgtgctgtac agcatcgttg acctacattc catcactgtc ccccaagacc cagccatcct
      301 ccggcagagc atcttggaca tgacggctgc tcttctcgcc tgcggcataa acccagagaa
      361 gagcatcctt ttccagcaat ctcaggtgtc tgaacacaca caattaagtt ggatccttac
      421 ctgcatggtc agactacccc gattacaaca tttacaccag tggaaggcaa agactgccaa
      481 ggagaagcag aatggaacca tgggcctgct cacctaccca gtactccagg cagctgacgt
      541 tctgctgtac aagtccacac acgttcctgt tggggaggat caagtccagc acatggagct
      601 agttcaggat ctagcacagg ggtttaacaa gaagtacggg gagttcttcc cagtacccag
      661 gtccattctg acgtcaatga agaaggtaaa atccctgcga gatccgtctg ccaagatgtc
      721 aaaatcagac cctgataaac tggccactgt cagaataaca gacagcccgg aggagatagt
      781 gcagaagttc cgcaaggctg tgacggactt cacctcggag gtcacctacg agccagccag
      841 ccgagggggc gtgtccaacc tggtggccat ccatgcagca gtgacagggc tccctgtgga
      901 ggaggtggtc tgccgcagcg ctggcatcga caccgctcgc tacaagctgg tggtggcaga
      961 tgctgtgatt gagaaatttg ctccaattaa gagtgaaatt gaaaaactga agacgaacaa
     1021 ggaccactta gagaaggttt tacaagctgg gtcagcaaaa gccaaagaat tagcatatcc
     1081 cgtgtgccag gaggtgaaga aattggtggg gtttctatag gaaggttcaa cgagtcacaa
     1141 aaagtctttt ctgtcttgtg gtccacgcac tcctattaag gcagctttcc tcacaagtga
     1201 acaattatag tttggggaca cacaatttgg tatacctgat cattggcttc atttgatgaa
     1261 taatgatttg tagccttcaa atagagcaat gttctaaatc ccatcagcga aattctgtgg
     1321 ggaaaaaaaa agagcaaaca aagaaggcat agctatctga atcctcaatt atgtgaggca
     1381 cactcggcct catttattca cacaaatgtg attgaggtaa gtagcaattt ggcaagtggg
     1441 tgtttcattt ttgtctctct gaagtcctta ctgtcacagg tgctcacttt ctctatccca
     1501 ccccttttaa aaagtaatat gtagaagttt taggcttata atccttggga tgccatttga
     1561 accaatttgt gttcagatct cataaaaata ggttgatgat tatcattcat ttgtcactga
     1621 gatggtacct gctttattgt atttaatcta tttatttccc aagagaccac actgactatt
     1681 ctagcaagta ttatctgggt tttttgtttg ttttttaaat tcagagatac atggtatgac
     1741 cttctgagaa ggttgcatta tttcagcttg atttatttat tgtacaaaag cccgagtcca
     1801 tacattacgt tcttaataag tacttccttg catttgtctc tcagtttaac gtcaccaacc
     1861 cactgtgaaa tctataggag aggaattgcc gttttacacc tgaggagcat gaagcttaga
     1921 gagtacagtt agcttgtaca atctctctcc gtgagtaaga agcaaatcca agatcaaaac
     1981 ctttactcct tattcctaag aatagtgctt ttttcatcag cacagaagtc agaagtcaca
     2041 gaagccacat gtttgagact acaagcattc ttgttttgaa agtgggtact ggaaatataa
     2101 gacctgaact actgacactg tttatatcag caagtcaacc actagctgcc agctttaaac
     2161 ctggattcag ccaaccttgg tcacatttgt tactcagaat ccccaaggcc ggtcccaagt
     2221 cctgtctcct atgcttattt cagagacact tcaaagtata ttctgcccga ctgcaagagt
     2281 agttggcctg acaagtcagc ttttcccagt gagcgggagc ttctcatctt acctttacct
     2341 cagtcaaagt agtagcaagt cactctaaaa actaccttct ctgcacatcc ctttcccaca
     2401 cctgaaagtg gaaatgataa ttgtgactca gcacaccagg gcctgattga ttttgtaaca
     2461 gaaattactt gtaagttttt tgccaatcgt caccatttat atatatgagt gacgagcatg
     2521 ttgggcaaag aatttttact catttcctaa gagaagaaag tagagtggtc cttttaccag
     2581 aacagatata aatacaccta acactgcatc ccagaatcca aattaaaaga ccctttttgg
     2641 atcttttctt ggaatgggtt gtctagagtg ggctctaggg agcttctttg gcatattttc
     2701 tgcaagcctc tttttttttg ttgtttggtt ggttttttcc tttcaaagaa accctagtat
     2761 gaatactgga aaatgactaa attaaaggtg gatctatcaa a
//
LOCUS       XR_004346080            2352 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tryptophanyl tRNA synthetase 2,
            mitochondrial (WARS2), transcript variant X2, misc_RNA.
ACCESSION   XR_004346080
VERSION     XR_004346080.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2352
                     /gene="WARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741216"
     misc_RNA        1..2352
                     /gene="WARS2"
                     /product="tryptophanyl tRNA synthetase 2, mitochondrial,
                     transcript variant X2"
                     /db_xref="GeneID:116741216"
ORIGIN      
        1 ctccgccctt ctcaagatgg cgctgcactc aatgcggaag gcgcgtgagt gctggaactt
       61 catccgggca cttcatcaag gacccgaagc tgctcccgct ccccagaaag attccgtgaa
      121 gcgaatattt tctggcattc agcctacagg aatcccccac ctcggcaatt acctgggagc
      181 cattgagagc tgggtgagat tacaggatga gcatgactcc gtgctgtaca gcatcgttga
      241 cctacattcc atcactgtcc cccaagaccc agccatcctc cggcagagca tcttggacat
      301 gacggctgct cttctcgcct gcggcataaa cccagagaag agcatccttt tccagcaatc
      361 tcaggtgtct gaacacacac aattaagttg gatccttacc tgcatggtca gactaccccg
      421 attacaacat ttacaccagt ggaaggcaaa gactgccaag gagaagcaga atggaaccat
      481 gggcctgctc acctacccag tactccaggc agctgacgtt ctgctgtaca agtccacaca
      541 cgttcctgtt ggggaggatc aagtccagca catggagcta gttcaggatc tagcacaggg
      601 gtttaacaag aagtacgggg agttcttccc agtacccagg tccattctga cgtcaatgaa
      661 gaaggtaaaa tccctgcgag atccgtctgc caagatgtca aaatcagacc ctgataaact
      721 ggccactgtc agaataacag acagcccgga ggagatagtg cagaagttcc gcaaggctgt
      781 gacggacttc acctcggagg tcacctacga gccagccagc cgagggggcg tgtccaacct
      841 ggtggccatc catgcagcag tgacagggct ccctgtggag gaggtggtct gccgcagcgc
      901 tggcatcgac accgctcgct acaagctggt ggtggcagat gctgtgattg agaaatttgc
      961 tccaattaag agtgaaattg aaaaactgaa gacgaacaag gaccacttag agaaggtttt
     1021 acaagctggg tcagcaaaag ccaaagaatt agcatatccc gtgtgccagg aggtgaagaa
     1081 attggtgggg tttctatagg aaggttcaac gagtcacaaa aagtcttttc tgtcttgtgg
     1141 tccacgcact cctattaagg cagctttcct cacaagtgaa caattatagt ttggggacac
     1201 acaatttggt atacctgatc attggcttca tttgatgaat aatgatttgt agccttcaaa
     1261 tagagcaatg ttctaaatcc catcagcgaa attctgtggg gaaaaaaaaa gagcaaacaa
     1321 agaaggcata gctatctgaa tcctcaatta tgtgaggcac actcggcctc atttattcac
     1381 acaaatgtga ttgagtttaa cgtcaccaac ccactgtgaa atctatagga gaggaattgc
     1441 cgttttacac ctgaggagca tgaagcttag agagtacagt tagcttgtac aatctctctc
     1501 cgtgagtaag aagcaaatcc aagatcaaaa cctttactcc ttattcctaa gaatagtgct
     1561 tttttcatca gcacagaagt cagaagtcac agaagccaca tgtttgagac tacaagcatt
     1621 cttgttttga aagtgggtac tggaaatata agacctgaac tactgacact gtttatatca
     1681 gcaagtcaac cactagctgc cagctttaaa cctggattca gccaaccttg gtcacatttg
     1741 ttactcagaa tccccaaggc cggtcccaag tcctgtctcc tatgcttatt tcagagacac
     1801 ttcaaagtat attctgcccg actgcaagag tagttggcct gacaagtcag cttttcccag
     1861 tgagcgggag cttctcatct tacctttacc tcagtcaaag tagtagcaag tcactctaaa
     1921 aactaccttc tctgcacatc cctttcccac acctgaaagt ggaaatgata attgtgactc
     1981 agcacaccag ggcctgattg attttgtaac agaaattact tgtaagtttt ttgccaatcg
     2041 tcaccattta tatatatgag tgacgagcat gttgggcaaa gaatttttac tcatttccta
     2101 agagaagaaa gtagagtggt ccttttacca gaacagatat aaatacacct aacactgcat
     2161 cccagaatcc aaattaaaag accctttttg gatcttttct tggaatgggt tgtctagagt
     2221 gggctctagg gagcttcttt ggcatatttt ctgcaagcct cttttttttt gttgtttggt
     2281 tggttttttc ctttcaaaga aaccctagta tgaatactgg aaaatgacta aattaaaggt
     2341 ggatctatca aa
//
LOCUS       XM_032607394            2886 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus testis associated actin remodelling
            kinase 2 (TESK2), transcript variant X1, mRNA.
ACCESSION   XM_032607394
VERSION     XM_032607394.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2886
                     /gene="TESK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741225"
     CDS             216..1934
                     /gene="TESK2"
                     /codon_start=1
                     /product="dual specificity testis-specific protein kinase
                     2 isoform X1"
                     /protein_id="XP_032463285.1"
                     /db_xref="GeneID:116741225"
                     /translation="MDRSKRNSIAGFPPRVERLEDFEGGGGGDGNMTQVGRVWPSSYR
                     ALISAFSRLTRLDDFTCEKIGSGFFSEVFKVRHRASGQVMALKMNTLSSNRANMLKEV
                     QLMNRLSHPNILRFMGVCVHQGQLHALTEYINSGNLEQLLDSNLHLPWTVRVKLAYDI
                     AVGLSYLHFKGIFHRDLTSKNCLIKRDENGYSAVVGDFGLAEKIPDVSMGSEKLAVVG
                     SPFWMAPEVLRDEPYNEKADVFSYGIILCEIIARIQADPDYLPRTENFGLDYDAFQHM
                     VGDCPPDFLQLTFNCCNMDPKLRPSFVEIGKILEEILSRLEEEELERDRKLQSTAKGL
                     LEKGPGVKRLSLLDDKIPPKSPRPRRTIWLSRSQSDIFSSKPPRTVNVLDPYYQPQRG
                     DAARAPKINPFSARQDLKGGKVKFFDLPSKSVISLVFDLDAPGPGTMPMADWQEPLAP
                     PVRRWRSLPSSPEFLHQEACPFVGREESLSDGPLPRLSSHKYRVREIPPFRASALPAA
                     PAHEAMDCSSPQEENGFGPRSQGASPCLAGAPEEMEVEERPRDLAPVPFSVSGIGLKT
                     QGELDG"
     misc_feature    405..1136
                     /gene="TESK2"
                     /note="Catalytic domain of the Dual-specificity protein
                     kinase, Testicular protein kinase; Region: PKc_TESK;
                     cd14155"
                     /db_xref="CDD:271057"
     misc_feature    order(405..419,429..431,468..470,474..476,555..557,
                     603..614,624..626,630..632,741..743,747..749,753..758,
                     762..764,804..806,813..815,867..878)
                     /gene="TESK2"
                     /note="active site"
                     /db_xref="CDD:271057"
     misc_feature    order(405..419,429..431,468..470,474..476,555..557,
                     603..614,624..626,741..743,747..749,753..758,762..764,
                     804..806)
                     /gene="TESK2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271057"
     misc_feature    order(417..419,624..626,630..632,741..743,747..749,
                     753..755,813..815,867..878)
                     /gene="TESK2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271057"
     misc_feature    order(801..833,837..878)
                     /gene="TESK2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271057"
ORIGIN      
        1 ggcaagctca ggcccacagc tggaagatct ccagaggcat accctttcta acctgcagcc
       61 cagcagcttt cagctccagg cccagagccc tatactttaa ggctccaaga tgctcctgag
      121 tgacttgaca agccagaaga gaagtaaaac tcaacagaaa tttactatgt gtggaattca
      181 ttcctaaaag aagaaaaaaa gtgattattg agactatgga tcggagcaaa cggaattcaa
      241 ttgcaggatt tcctccacgt gtggagcgtc ttgaagattt tgaaggaggt ggtggagggg
      301 acgggaacat gacccaggtg ggaagagttt ggccctcttc atatcgagct cttataagtg
      361 ccttttccag actgacgcgt ttagatgact tcacctgtga aaaaataggg tctggcttct
      421 tctctgaagt gttcaaggtg cgccaccgag cttctggcca ggtgatggct cttaagatga
      481 acacgttgag cagtaaccgt gcaaacatgc tgaaagaagt gcagctcatg aatagactct
      541 cccatcccaa catccttagg ttcatgggtg tgtgtgtaca tcaaggacaa ttgcatgcac
      601 tcacagagta tatcaactct ggaaacctgg aacagttgct agacagtaac ctgcatttgc
      661 cctggactgt gagggtgaaa ctggcttatg acatagcagt gggcctcagc taccttcact
      721 tcaaaggcat tttccatcgg gacctcacat ctaagaactg cctgataaag agggatgaga
      781 atggttactc tgcagtggta ggtgactttg gcctggctga gaagatccct gatgtcagca
      841 tggggagtga gaagctggct gtggtgggct cacccttctg gatggcaccc gaggttctcc
      901 gagatgagcc ctacaatgaa aaggcggacg tgttctctta tggtatcatc ctctgtgaga
      961 tcatcgcccg catacaggct gatccagact atcttccccg aacagagaat ttcgggctgg
     1021 actatgatgc tttccagcac atggtgggag actgtccccc agactttctg cagctcacct
     1081 tcaactgttg taatatggac cccaaactgc gcccatcctt tgtggagatt gggaagatct
     1141 tggaggaaat tctgagccgc ctagaggagg aagagctgga aagggacagg aagctgcagt
     1201 ccacagccaa aggactcttg gagaaaggac ctggggtgaa gcgactgagc ttactggatg
     1261 acaagatccc tcccaagtcc ccacgcccaa gacgtactat ctggctgtct cgaagccagt
     1321 cagacatctt ctccagtaag cccccacgta cagtgaatgt cttggatccc tactaccagc
     1381 cacaacgagg tgatgctgcc cgagccccca aaatcaaccc tttcagtgct cgccaggacc
     1441 tcaaaggtgg caaggtcaag ttctttgacc tgcccagcaa gtctgtcatc tccttggtat
     1501 ttgacctgga tgcaccaggg cctggaacta tgcccatggc tgattggcag gagcccctcg
     1561 ccccacctgt tcgccggtgg cgttctttgc ctagttcacc agagttcttg catcaagagg
     1621 cttgtccgtt tgtgggccga gaagaatcac tatctgatgg gcccctacca cgcctcagta
     1681 gtcacaagta cagagtaagg gagatcccac cattccgagc atctgcccta ccagctgctc
     1741 cagcccatga agccatggac tgctccagtc cccaggaaga aaacggtttt gggcccaggt
     1801 ctcagggggc cagtccatgc cttgcaggtg cccctgagga gatggaggta gaagaaaggc
     1861 caagagactt ggctccagtc cccttttctg tctcaggcat aggcctgaaa acccagggag
     1921 agctggatgg gtaaggggcg ttaaccccca cctcaccttg gggattgacc ttcagctgaa
     1981 gccacagggc ccccttgctg cagagccttg cctcttccct ggggcccaca gagcaggcag
     2041 gctaagccaa gccaggctca acttcggggt tcccagtgcc caatggctat gtatgaggtg
     2101 aggcagcagt gagacacctt cctagttagg gcaaacagct aataccaagc ctctgaaatc
     2161 cagcaaggag ctctggcccc cacccagact tccccagaca ggaccagagg actcctagtt
     2221 ctagtgtgca ctggcaggca gctattaccc caggttcttc tcctatccca ggtctgtctc
     2281 ctttcctttc ctggggcata taagctaaaa tggatggaac ctggagctga ccaggagacc
     2341 ataaagggca tggctatttc tcagacctga agactggggt gcttcttgcc agaatgttta
     2401 agacacttga ataattgctg tttgcactta ctgcatggtc agaccacgtc actacacttt
     2461 ctatgcaagg ggagggcaag gcagagtggt ggtcatggct ctcagctaac ctattcaaag
     2521 atcttttcca gttgattaat ctattttcat atttatgaag gagtcttaat gttctgccct
     2581 ataaaacttt caactttgtg ttgggagtag ggctggtttt gtaggcccta gggcctgctc
     2641 tatgtatttg tcaacacgtg atacacccag ttggttaaat ggtttatacg tggactgatt
     2701 tcttcccttt ctgctacagc cggagctatg ggaagagtct gtccttatag agccgcaata
     2761 agaaataacc aaagatgaag ctggtcaaat attttcatat cttgtttctg ttgatttttt
     2821 ttgaaacttt cccaggacac tttgagattt aaaaatgaat aaagtctgtg ttacaggtgc
     2881 tggtca
//
LOCUS       XM_032607405            3092 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus testis associated actin remodelling
            kinase 2 (TESK2), transcript variant X2, mRNA.
ACCESSION   XM_032607405
VERSION     XM_032607405.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3092
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3092
                     /gene="TESK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741225"
     CDS             422..2140
                     /gene="TESK2"
                     /codon_start=1
                     /product="dual specificity testis-specific protein kinase
                     2 isoform X1"
                     /protein_id="XP_032463296.1"
                     /db_xref="GeneID:116741225"
                     /translation="MDRSKRNSIAGFPPRVERLEDFEGGGGGDGNMTQVGRVWPSSYR
                     ALISAFSRLTRLDDFTCEKIGSGFFSEVFKVRHRASGQVMALKMNTLSSNRANMLKEV
                     QLMNRLSHPNILRFMGVCVHQGQLHALTEYINSGNLEQLLDSNLHLPWTVRVKLAYDI
                     AVGLSYLHFKGIFHRDLTSKNCLIKRDENGYSAVVGDFGLAEKIPDVSMGSEKLAVVG
                     SPFWMAPEVLRDEPYNEKADVFSYGIILCEIIARIQADPDYLPRTENFGLDYDAFQHM
                     VGDCPPDFLQLTFNCCNMDPKLRPSFVEIGKILEEILSRLEEEELERDRKLQSTAKGL
                     LEKGPGVKRLSLLDDKIPPKSPRPRRTIWLSRSQSDIFSSKPPRTVNVLDPYYQPQRG
                     DAARAPKINPFSARQDLKGGKVKFFDLPSKSVISLVFDLDAPGPGTMPMADWQEPLAP
                     PVRRWRSLPSSPEFLHQEACPFVGREESLSDGPLPRLSSHKYRVREIPPFRASALPAA
                     PAHEAMDCSSPQEENGFGPRSQGASPCLAGAPEEMEVEERPRDLAPVPFSVSGIGLKT
                     QGELDG"
     misc_feature    611..1342
                     /gene="TESK2"
                     /note="Catalytic domain of the Dual-specificity protein
                     kinase, Testicular protein kinase; Region: PKc_TESK;
                     cd14155"
                     /db_xref="CDD:271057"
     misc_feature    order(611..625,635..637,674..676,680..682,761..763,
                     809..820,830..832,836..838,947..949,953..955,959..964,
                     968..970,1010..1012,1019..1021,1073..1084)
                     /gene="TESK2"
                     /note="active site"
                     /db_xref="CDD:271057"
     misc_feature    order(611..625,635..637,674..676,680..682,761..763,
                     809..820,830..832,947..949,953..955,959..964,968..970,
                     1010..1012)
                     /gene="TESK2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271057"
     misc_feature    order(623..625,830..832,836..838,947..949,953..955,
                     959..961,1019..1021,1073..1084)
                     /gene="TESK2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271057"
     misc_feature    order(1007..1039,1043..1084)
                     /gene="TESK2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271057"
ORIGIN      
        1 gcctgggcag gagtttcagt cgctcgcgac cgggcagccc ggggctcttc cagctgcgct
       61 ctttggctcg ccggccggat cattctcctg gcctcgccga acaggccggg gggagcggcc
      121 ccggctgcgg ggtcatggca gtagcctcct cgtcctccgc cgccgctggc ccagccgagt
      181 cgccggcttc tgcgcgaggg agccctaccg cctccgcagg ctaagagccg ctgccgcctc
      241 cgagctgtga gggctactat gctccctctt tgcctccgcc tccccctccc gcccgcgcag
      301 gcacccctct ggctgctcag tcccgcctca gtgacaagcc agaagagaag taaaactcaa
      361 cagaaattta ctatgtgtgg aattcattcc taaaagaaga aaaaaagtga ttattgagac
      421 tatggatcgg agcaaacgga attcaattgc aggatttcct ccacgtgtgg agcgtcttga
      481 agattttgaa ggaggtggtg gaggggacgg gaacatgacc caggtgggaa gagtttggcc
      541 ctcttcatat cgagctctta taagtgcctt ttccagactg acgcgtttag atgacttcac
      601 ctgtgaaaaa atagggtctg gcttcttctc tgaagtgttc aaggtgcgcc accgagcttc
      661 tggccaggtg atggctctta agatgaacac gttgagcagt aaccgtgcaa acatgctgaa
      721 agaagtgcag ctcatgaata gactctccca tcccaacatc cttaggttca tgggtgtgtg
      781 tgtacatcaa ggacaattgc atgcactcac agagtatatc aactctggaa acctggaaca
      841 gttgctagac agtaacctgc atttgccctg gactgtgagg gtgaaactgg cttatgacat
      901 agcagtgggc ctcagctacc ttcacttcaa aggcattttc catcgggacc tcacatctaa
      961 gaactgcctg ataaagaggg atgagaatgg ttactctgca gtggtaggtg actttggcct
     1021 ggctgagaag atccctgatg tcagcatggg gagtgagaag ctggctgtgg tgggctcacc
     1081 cttctggatg gcacccgagg ttctccgaga tgagccctac aatgaaaagg cggacgtgtt
     1141 ctcttatggt atcatcctct gtgagatcat cgcccgcata caggctgatc cagactatct
     1201 tccccgaaca gagaatttcg ggctggacta tgatgctttc cagcacatgg tgggagactg
     1261 tcccccagac tttctgcagc tcaccttcaa ctgttgtaat atggacccca aactgcgccc
     1321 atcctttgtg gagattggga agatcttgga ggaaattctg agccgcctag aggaggaaga
     1381 gctggaaagg gacaggaagc tgcagtccac agccaaagga ctcttggaga aaggacctgg
     1441 ggtgaagcga ctgagcttac tggatgacaa gatccctccc aagtccccac gcccaagacg
     1501 tactatctgg ctgtctcgaa gccagtcaga catcttctcc agtaagcccc cacgtacagt
     1561 gaatgtcttg gatccctact accagccaca acgaggtgat gctgcccgag cccccaaaat
     1621 caaccctttc agtgctcgcc aggacctcaa aggtggcaag gtcaagttct ttgacctgcc
     1681 cagcaagtct gtcatctcct tggtatttga cctggatgca ccagggcctg gaactatgcc
     1741 catggctgat tggcaggagc ccctcgcccc acctgttcgc cggtggcgtt ctttgcctag
     1801 ttcaccagag ttcttgcatc aagaggcttg tccgtttgtg ggccgagaag aatcactatc
     1861 tgatgggccc ctaccacgcc tcagtagtca caagtacaga gtaagggaga tcccaccatt
     1921 ccgagcatct gccctaccag ctgctccagc ccatgaagcc atggactgct ccagtcccca
     1981 ggaagaaaac ggttttgggc ccaggtctca gggggccagt ccatgccttg caggtgcccc
     2041 tgaggagatg gaggtagaag aaaggccaag agacttggct ccagtcccct tttctgtctc
     2101 aggcataggc ctgaaaaccc agggagagct ggatgggtaa ggggcgttaa cccccacctc
     2161 accttgggga ttgaccttca gctgaagcca cagggccccc ttgctgcaga gccttgcctc
     2221 ttccctgggg cccacagagc aggcaggcta agccaagcca ggctcaactt cggggttccc
     2281 agtgcccaat ggctatgtat gaggtgaggc agcagtgaga caccttccta gttagggcaa
     2341 acagctaata ccaagcctct gaaatccagc aaggagctct ggcccccacc cagacttccc
     2401 cagacaggac cagaggactc ctagttctag tgtgcactgg caggcagcta ttaccccagg
     2461 ttcttctcct atcccaggtc tgtctccttt cctttcctgg ggcatataag ctaaaatgga
     2521 tggaacctgg agctgaccag gagaccataa agggcatggc tatttctcag acctgaagac
     2581 tggggtgctt cttgccagaa tgtttaagac acttgaataa ttgctgtttg cacttactgc
     2641 atggtcagac cacgtcacta cactttctat gcaaggggag ggcaaggcag agtggtggtc
     2701 atggctctca gctaacctat tcaaagatct tttccagttg attaatctat tttcatattt
     2761 atgaaggagt cttaatgttc tgccctataa aactttcaac tttgtgttgg gagtagggct
     2821 ggttttgtag gccctagggc ctgctctatg tatttgtcaa cacgtgatac acccagttgg
     2881 ttaaatggtt tatacgtgga ctgatttctt ccctttctgc tacagccgga gctatgggaa
     2941 gagtctgtcc ttatagagcc gcaataagaa ataaccaaag atgaagctgg tcaaatattt
     3001 tcatatcttg tttctgttga ttttttttga aactttccca ggacactttg agatttaaaa
     3061 atgaataaag tctgtgttac aggtgctggt ca
//
LOCUS       XM_032607412            3129 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus testis associated actin remodelling
            kinase 2 (TESK2), transcript variant X3, mRNA.
ACCESSION   XM_032607412
VERSION     XM_032607412.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3129
                     /gene="TESK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741225"
     CDS             459..2177
                     /gene="TESK2"
                     /codon_start=1
                     /product="dual specificity testis-specific protein kinase
                     2 isoform X1"
                     /protein_id="XP_032463303.1"
                     /db_xref="GeneID:116741225"
                     /translation="MDRSKRNSIAGFPPRVERLEDFEGGGGGDGNMTQVGRVWPSSYR
                     ALISAFSRLTRLDDFTCEKIGSGFFSEVFKVRHRASGQVMALKMNTLSSNRANMLKEV
                     QLMNRLSHPNILRFMGVCVHQGQLHALTEYINSGNLEQLLDSNLHLPWTVRVKLAYDI
                     AVGLSYLHFKGIFHRDLTSKNCLIKRDENGYSAVVGDFGLAEKIPDVSMGSEKLAVVG
                     SPFWMAPEVLRDEPYNEKADVFSYGIILCEIIARIQADPDYLPRTENFGLDYDAFQHM
                     VGDCPPDFLQLTFNCCNMDPKLRPSFVEIGKILEEILSRLEEEELERDRKLQSTAKGL
                     LEKGPGVKRLSLLDDKIPPKSPRPRRTIWLSRSQSDIFSSKPPRTVNVLDPYYQPQRG
                     DAARAPKINPFSARQDLKGGKVKFFDLPSKSVISLVFDLDAPGPGTMPMADWQEPLAP
                     PVRRWRSLPSSPEFLHQEACPFVGREESLSDGPLPRLSSHKYRVREIPPFRASALPAA
                     PAHEAMDCSSPQEENGFGPRSQGASPCLAGAPEEMEVEERPRDLAPVPFSVSGIGLKT
                     QGELDG"
     misc_feature    648..1379
                     /gene="TESK2"
                     /note="Catalytic domain of the Dual-specificity protein
                     kinase, Testicular protein kinase; Region: PKc_TESK;
                     cd14155"
                     /db_xref="CDD:271057"
     misc_feature    order(648..662,672..674,711..713,717..719,798..800,
                     846..857,867..869,873..875,984..986,990..992,996..1001,
                     1005..1007,1047..1049,1056..1058,1110..1121)
                     /gene="TESK2"
                     /note="active site"
                     /db_xref="CDD:271057"
     misc_feature    order(648..662,672..674,711..713,717..719,798..800,
                     846..857,867..869,984..986,990..992,996..1001,1005..1007,
                     1047..1049)
                     /gene="TESK2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271057"
     misc_feature    order(660..662,867..869,873..875,984..986,990..992,
                     996..998,1056..1058,1110..1121)
                     /gene="TESK2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271057"
     misc_feature    order(1044..1076,1080..1121)
                     /gene="TESK2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271057"
ORIGIN      
        1 gcctgggcag gagtttcagt cgctcgcgac cgggcagccc ggggctcttc cagctgcgct
       61 ctttggctcg ccggccggat cattctcctg gcctcgccga acaggccggg gggagcggcc
      121 ccggctgcgg ggtcatggca gtagcctcct cgtcctccgc cgccgctggc ccagccgagt
      181 cgccggcttc tgcgcgaggg agccctaccg cctccgcagg ctaagagccg ctgccgcctc
      241 cgagctgtga gggctactat gctccctctt tgcctccgcc tccccctccc gcccgcgcag
      301 gcacccctct ggctgctcag tcccgcctca gcctctgaaa tagacttcta acaactttat
      361 cagaagagtg acaagccaga agagaagtaa aactcaacag aaatttacta tgtgtggaat
      421 tcattcctaa aagaagaaaa aaagtgatta ttgagactat ggatcggagc aaacggaatt
      481 caattgcagg atttcctcca cgtgtggagc gtcttgaaga ttttgaagga ggtggtggag
      541 gggacgggaa catgacccag gtgggaagag tttggccctc ttcatatcga gctcttataa
      601 gtgccttttc cagactgacg cgtttagatg acttcacctg tgaaaaaata gggtctggct
      661 tcttctctga agtgttcaag gtgcgccacc gagcttctgg ccaggtgatg gctcttaaga
      721 tgaacacgtt gagcagtaac cgtgcaaaca tgctgaaaga agtgcagctc atgaatagac
      781 tctcccatcc caacatcctt aggttcatgg gtgtgtgtgt acatcaagga caattgcatg
      841 cactcacaga gtatatcaac tctggaaacc tggaacagtt gctagacagt aacctgcatt
      901 tgccctggac tgtgagggtg aaactggctt atgacatagc agtgggcctc agctaccttc
      961 acttcaaagg cattttccat cgggacctca catctaagaa ctgcctgata aagagggatg
     1021 agaatggtta ctctgcagtg gtaggtgact ttggcctggc tgagaagatc cctgatgtca
     1081 gcatggggag tgagaagctg gctgtggtgg gctcaccctt ctggatggca cccgaggttc
     1141 tccgagatga gccctacaat gaaaaggcgg acgtgttctc ttatggtatc atcctctgtg
     1201 agatcatcgc ccgcatacag gctgatccag actatcttcc ccgaacagag aatttcgggc
     1261 tggactatga tgctttccag cacatggtgg gagactgtcc cccagacttt ctgcagctca
     1321 ccttcaactg ttgtaatatg gaccccaaac tgcgcccatc ctttgtggag attgggaaga
     1381 tcttggagga aattctgagc cgcctagagg aggaagagct ggaaagggac aggaagctgc
     1441 agtccacagc caaaggactc ttggagaaag gacctggggt gaagcgactg agcttactgg
     1501 atgacaagat ccctcccaag tccccacgcc caagacgtac tatctggctg tctcgaagcc
     1561 agtcagacat cttctccagt aagcccccac gtacagtgaa tgtcttggat ccctactacc
     1621 agccacaacg aggtgatgct gcccgagccc ccaaaatcaa ccctttcagt gctcgccagg
     1681 acctcaaagg tggcaaggtc aagttctttg acctgcccag caagtctgtc atctccttgg
     1741 tatttgacct ggatgcacca gggcctggaa ctatgcccat ggctgattgg caggagcccc
     1801 tcgccccacc tgttcgccgg tggcgttctt tgcctagttc accagagttc ttgcatcaag
     1861 aggcttgtcc gtttgtgggc cgagaagaat cactatctga tgggccccta ccacgcctca
     1921 gtagtcacaa gtacagagta agggagatcc caccattccg agcatctgcc ctaccagctg
     1981 ctccagccca tgaagccatg gactgctcca gtccccagga agaaaacggt tttgggccca
     2041 ggtctcaggg ggccagtcca tgccttgcag gtgcccctga ggagatggag gtagaagaaa
     2101 ggccaagaga cttggctcca gtcccctttt ctgtctcagg cataggcctg aaaacccagg
     2161 gagagctgga tgggtaaggg gcgttaaccc ccacctcacc ttggggattg accttcagct
     2221 gaagccacag ggcccccttg ctgcagagcc ttgcctcttc cctggggccc acagagcagg
     2281 caggctaagc caagccaggc tcaacttcgg ggttcccagt gcccaatggc tatgtatgag
     2341 gtgaggcagc agtgagacac cttcctagtt agggcaaaca gctaatacca agcctctgaa
     2401 atccagcaag gagctctggc ccccacccag acttccccag acaggaccag aggactccta
     2461 gttctagtgt gcactggcag gcagctatta ccccaggttc ttctcctatc ccaggtctgt
     2521 ctcctttcct ttcctggggc atataagcta aaatggatgg aacctggagc tgaccaggag
     2581 accataaagg gcatggctat ttctcagacc tgaagactgg ggtgcttctt gccagaatgt
     2641 ttaagacact tgaataattg ctgtttgcac ttactgcatg gtcagaccac gtcactacac
     2701 tttctatgca aggggagggc aaggcagagt ggtggtcatg gctctcagct aacctattca
     2761 aagatctttt ccagttgatt aatctatttt catatttatg aaggagtctt aatgttctgc
     2821 cctataaaac tttcaacttt gtgttgggag tagggctggt tttgtaggcc ctagggcctg
     2881 ctctatgtat ttgtcaacac gtgatacacc cagttggtta aatggtttat acgtggactg
     2941 atttcttccc tttctgctac agccggagct atgggaagag tctgtcctta tagagccgca
     3001 ataagaaata accaaagatg aagctggtca aatattttca tatcttgttt ctgttgattt
     3061 tttttgaaac tttcccagga cactttgaga tttaaaaatg aataaagtct gtgttacagg
     3121 tgctggtca
//
LOCUS       XM_032607421            2607 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus testis associated actin remodelling
            kinase 2 (TESK2), transcript variant X4, mRNA.
ACCESSION   XM_032607421
VERSION     XM_032607421.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2607
                     /gene="TESK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741225"
     CDS             156..1655
                     /gene="TESK2"
                     /codon_start=1
                     /product="dual specificity testis-specific protein kinase
                     2 isoform X2"
                     /protein_id="XP_032463312.1"
                     /db_xref="GeneID:116741225"
                     /translation="MVRHRASGQVMALKMNTLSSNRANMLKEVQLMNRLSHPNILRFM
                     GVCVHQGQLHALTEYINSGNLEQLLDSNLHLPWTVRVKLAYDIAVGLSYLHFKGIFHR
                     DLTSKNCLIKRDENGYSAVVGDFGLAEKIPDVSMGSEKLAVVGSPFWMAPEVLRDEPY
                     NEKADVFSYGIILCEIIARIQADPDYLPRTENFGLDYDAFQHMVGDCPPDFLQLTFNC
                     CNMDPKLRPSFVEIGKILEEILSRLEEEELERDRKLQSTAKGLLEKGPGVKRLSLLDD
                     KIPPKSPRPRRTIWLSRSQSDIFSSKPPRTVNVLDPYYQPQRGDAARAPKINPFSARQ
                     DLKGGKVKFFDLPSKSVISLVFDLDAPGPGTMPMADWQEPLAPPVRRWRSLPSSPEFL
                     HQEACPFVGREESLSDGPLPRLSSHKYRVREIPPFRASALPAAPAHEAMDCSSPQEEN
                     GFGPRSQGASPCLAGAPEEMEVEERPRDLAPVPFSVSGIGLKTQGELDG"
     misc_feature    159..857
                     /gene="TESK2"
                     /note="Catalytic domain of the Dual-specificity protein
                     kinase, Testicular protein kinase; Region: PKc_TESK;
                     cd14155"
                     /db_xref="CDD:271057"
     misc_feature    order(345..347,351..353,462..464,468..470,474..476,
                     534..536,588..599)
                     /gene="TESK2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271057"
     misc_feature    order(522..554,558..599)
                     /gene="TESK2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271057"
ORIGIN      
        1 tgaagcggtc agagaatgct tcccagagtt cacccttgag ttttcttgaa ggggaagaaa
       61 gcttgtcaga tagacaagca gggaaagggc atttcaagca tgaagaaaag cattcgcaga
      121 ggcacagagg aataagagca tggaatattt tcggaatggt gcgccaccga gcttctggcc
      181 aggtgatggc tcttaagatg aacacgttga gcagtaaccg tgcaaacatg ctgaaagaag
      241 tgcagctcat gaatagactc tcccatccca acatccttag gttcatgggt gtgtgtgtac
      301 atcaaggaca attgcatgca ctcacagagt atatcaactc tggaaacctg gaacagttgc
      361 tagacagtaa cctgcatttg ccctggactg tgagggtgaa actggcttat gacatagcag
      421 tgggcctcag ctaccttcac ttcaaaggca ttttccatcg ggacctcaca tctaagaact
      481 gcctgataaa gagggatgag aatggttact ctgcagtggt aggtgacttt ggcctggctg
      541 agaagatccc tgatgtcagc atggggagtg agaagctggc tgtggtgggc tcacccttct
      601 ggatggcacc cgaggttctc cgagatgagc cctacaatga aaaggcggac gtgttctctt
      661 atggtatcat cctctgtgag atcatcgccc gcatacaggc tgatccagac tatcttcccc
      721 gaacagagaa tttcgggctg gactatgatg ctttccagca catggtggga gactgtcccc
      781 cagactttct gcagctcacc ttcaactgtt gtaatatgga ccccaaactg cgcccatcct
      841 ttgtggagat tgggaagatc ttggaggaaa ttctgagccg cctagaggag gaagagctgg
      901 aaagggacag gaagctgcag tccacagcca aaggactctt ggagaaagga cctggggtga
      961 agcgactgag cttactggat gacaagatcc ctcccaagtc cccacgccca agacgtacta
     1021 tctggctgtc tcgaagccag tcagacatct tctccagtaa gcccccacgt acagtgaatg
     1081 tcttggatcc ctactaccag ccacaacgag gtgatgctgc ccgagccccc aaaatcaacc
     1141 ctttcagtgc tcgccaggac ctcaaaggtg gcaaggtcaa gttctttgac ctgcccagca
     1201 agtctgtcat ctccttggta tttgacctgg atgcaccagg gcctggaact atgcccatgg
     1261 ctgattggca ggagcccctc gccccacctg ttcgccggtg gcgttctttg cctagttcac
     1321 cagagttctt gcatcaagag gcttgtccgt ttgtgggccg agaagaatca ctatctgatg
     1381 ggcccctacc acgcctcagt agtcacaagt acagagtaag ggagatccca ccattccgag
     1441 catctgccct accagctgct ccagcccatg aagccatgga ctgctccagt ccccaggaag
     1501 aaaacggttt tgggcccagg tctcaggggg ccagtccatg ccttgcaggt gcccctgagg
     1561 agatggaggt agaagaaagg ccaagagact tggctccagt ccccttttct gtctcaggca
     1621 taggcctgaa aacccaggga gagctggatg ggtaaggggc gttaaccccc acctcacctt
     1681 ggggattgac cttcagctga agccacaggg cccccttgct gcagagcctt gcctcttccc
     1741 tggggcccac agagcaggca ggctaagcca agccaggctc aacttcgggg ttcccagtgc
     1801 ccaatggcta tgtatgaggt gaggcagcag tgagacacct tcctagttag ggcaaacagc
     1861 taataccaag cctctgaaat ccagcaagga gctctggccc ccacccagac ttccccagac
     1921 aggaccagag gactcctagt tctagtgtgc actggcaggc agctattacc ccaggttctt
     1981 ctcctatccc aggtctgtct cctttccttt cctggggcat ataagctaaa atggatggaa
     2041 cctggagctg accaggagac cataaagggc atggctattt ctcagacctg aagactgggg
     2101 tgcttcttgc cagaatgttt aagacacttg aataattgct gtttgcactt actgcatggt
     2161 cagaccacgt cactacactt tctatgcaag gggagggcaa ggcagagtgg tggtcatggc
     2221 tctcagctaa cctattcaaa gatcttttcc agttgattaa tctattttca tatttatgaa
     2281 ggagtcttaa tgttctgccc tataaaactt tcaactttgt gttgggagta gggctggttt
     2341 tgtaggccct agggcctgct ctatgtattt gtcaacacgt gatacaccca gttggttaaa
     2401 tggtttatac gtggactgat ttcttccctt tctgctacag ccggagctat gggaagagtc
     2461 tgtccttata gagccgcaat aagaaataac caaagatgaa gctggtcaaa tattttcata
     2521 tcttgtttct gttgattttt tttgaaactt tcccaggaca ctttgagatt taaaaatgaa
     2581 taaagtctgt gttacaggtg ctggtca
//
LOCUS       XM_032607434            1847 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X1, mRNA.
ACCESSION   XM_032607434
VERSION     XM_032607434.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1847
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741241"
     CDS             139..1785
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X1"
                     /protein_id="XP_032463325.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDAGLA
                     RQQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRA
                     YAVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRR
                     LQEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVL
                     CRVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCP
                     VQSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFP
                     RKVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQ
                     RKALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGAR
                     WLTREEFHTAAVSTAMKKALPLLSSLYFLCFLHVLSEPVTMCSVYTRANSQGPARVPK
                     DPRCPPCPDGKSPAQASKSWIVSFGPTSPADAPSLNSATQ"
     misc_feature    349..1563
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 tggcgcggtg gagtcagcct ggcgcgcgct aggagcctat tggctggtgt gggccgattc
       61 accgcccgga ttggatggag ccacgccccc tggagttcgt ctgggagctg ggcgctggag
      121 atcgcgcagg agtcaatcat gaggaagcca cgagcagctg tgggaagtcg aagtcgttgc
      181 aggaagcagg catccagcca ggagggaagg gagaaacgtg ccctcagcag cagccaggcc
      241 aagctgtctg cacctgacgc aggcctggcc aggcagcagg aggaggtgag attgcaggcc
      301 cctgtctccc cgtaccatct attcggagac acagctgagg tgacagtctt ccggaagagc
      361 ctgctgagct ggtatgaccg agagaagcgg gacctaccct ggagaaggcg ggtggagggt
      421 gaggtggacc tggacaggcg ggcatacgct gtgtgggtct cagaggtcat gctgcagcag
      481 acccaggttg ccacggtgat cgactattat aaccgatgga tgcagaagtg gccaacgctg
      541 caggacctgg ccagtgcttc cttggaggag gtaaaccagc tctgggctgg cctgggctat
      601 tactctcgag gccggcggct acaggaagga gcccggaagg tggtagagga gctagggggc
      661 cacatgccac gtacagcaga gaccctgcag tggctcctgc ctggtgtggg gcggtacaca
      721 gccagagcca ttgcttccat tgcctttggc caggcaaccg gtgtggtgga tgggaacgta
      781 gtacgggtgc tatgccgtgt ccgagccatt ggtgctgatc ccagcagcac ccttgtttcc
      841 cagcagctct ggagcctagc ccagcagctg gtggagccag cccggccagg ggactttaat
      901 caagcagcca tggagctggg ggccacagtg tgcaccccgc agcgcccgct ctgcagccag
      961 tgccctgtgc agagcctgtg ccgggcacgc cagagggtgg agcgggagca gctctcagcc
     1021 tcacggagcc cgccaggcag tcgtgacgtg gaggagtgtg ctcccaacac tggacagtgc
     1081 cagctgtgtg cgcctcccac agagccctgg gaccagaccc tgggagtggc caactttccc
     1141 agaaaggtca gtcgcaggcc ccccagggag gagtgctctg ccacctgtgt tctggagcag
     1201 cccagggccc ttgggggtgc ccgaattctg ctggtgcaga ggcccaactc aggtctgctg
     1261 gcaggactgt gggagttccc gtctgtgact gcagagccct cagggcagca ccagcgcaag
     1321 gccctgctgc gggaactgca gagttgggtt gggcccgtcc cggccacccg ccttcggcac
     1381 ctgggacagg tggtccacac cttctctcac atcaagctga catatcaagt atacggtctg
     1441 gccctggaag aacagacccc agtggccatt gtaccacctg gagctcgctg gctgacccgg
     1501 gaggagtttc acaccgctgc tgtctccacc gccatgaaaa aggcactacc tttgttgtct
     1561 tcgttgtact ttttgtgttt cctacatgtt ctaagtgaac ctgttactat gtgttccgtg
     1621 tatacgaggg ccaacagcca gggacctgca agggttccaa aagatcccag gtgtccaccc
     1681 tgtccggatg gaaaaagccc agcgcaggcc agcaagtcct ggatagtttc tttcggcccc
     1741 acatcccctg ctgatgcacc cagcctcaac agtgcaacac agtgatgcct ctggaagccc
     1801 ccaccccctg agaatcctgt ttaataaagt gctgattttt gtagtca
//
LOCUS       XM_032607442            1901 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X2, mRNA.
ACCESSION   XM_032607442
VERSION     XM_032607442.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1901
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741241"
     CDS             193..1839
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X1"
                     /protein_id="XP_032463333.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDAGLA
                     RQQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRA
                     YAVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRR
                     LQEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVL
                     CRVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCP
                     VQSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFP
                     RKVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQ
                     RKALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGAR
                     WLTREEFHTAAVSTAMKKALPLLSSLYFLCFLHVLSEPVTMCSVYTRANSQGPARVPK
                     DPRCPPCPDGKSPAQASKSWIVSFGPTSPADAPSLNSATQ"
     misc_feature    403..1617
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 ttgggaaggg gcaagctgcc agggagggtg gagagctcac ggcgttccag gaagtgaaag
       61 aagccgggac ggagacagga gatgaggctg cggaggttga gagcgaccgg ctagcaggaa
      121 cacttttgaa acaatccgtt cgcgtgataa tagggatttg aattaagcct ccggtaggga
      181 cagatttcaa tcatgaggaa gccacgagca gctgtgggaa gtcgaagtcg ttgcaggaag
      241 caggcatcca gccaggaggg aagggagaaa cgtgccctca gcagcagcca ggccaagctg
      301 tctgcacctg acgcaggcct ggccaggcag caggaggagg tgagattgca ggcccctgtc
      361 tccccgtacc atctattcgg agacacagct gaggtgacag tcttccggaa gagcctgctg
      421 agctggtatg accgagagaa gcgggaccta ccctggagaa ggcgggtgga gggtgaggtg
      481 gacctggaca ggcgggcata cgctgtgtgg gtctcagagg tcatgctgca gcagacccag
      541 gttgccacgg tgatcgacta ttataaccga tggatgcaga agtggccaac gctgcaggac
      601 ctggccagtg cttccttgga ggaggtaaac cagctctggg ctggcctggg ctattactct
      661 cgaggccggc ggctacagga aggagcccgg aaggtggtag aggagctagg gggccacatg
      721 ccacgtacag cagagaccct gcagtggctc ctgcctggtg tggggcggta cacagccaga
      781 gccattgctt ccattgcctt tggccaggca accggtgtgg tggatgggaa cgtagtacgg
      841 gtgctatgcc gtgtccgagc cattggtgct gatcccagca gcacccttgt ttcccagcag
      901 ctctggagcc tagcccagca gctggtggag ccagcccggc caggggactt taatcaagca
      961 gccatggagc tgggggccac agtgtgcacc ccgcagcgcc cgctctgcag ccagtgccct
     1021 gtgcagagcc tgtgccgggc acgccagagg gtggagcggg agcagctctc agcctcacgg
     1081 agcccgccag gcagtcgtga cgtggaggag tgtgctccca acactggaca gtgccagctg
     1141 tgtgcgcctc ccacagagcc ctgggaccag accctgggag tggccaactt tcccagaaag
     1201 gtcagtcgca ggccccccag ggaggagtgc tctgccacct gtgttctgga gcagcccagg
     1261 gcccttgggg gtgcccgaat tctgctggtg cagaggccca actcaggtct gctggcagga
     1321 ctgtgggagt tcccgtctgt gactgcagag ccctcagggc agcaccagcg caaggccctg
     1381 ctgcgggaac tgcagagttg ggttgggccc gtcccggcca cccgccttcg gcacctggga
     1441 caggtggtcc acaccttctc tcacatcaag ctgacatatc aagtatacgg tctggccctg
     1501 gaagaacaga ccccagtggc cattgtacca cctggagctc gctggctgac ccgggaggag
     1561 tttcacaccg ctgctgtctc caccgccatg aaaaaggcac tacctttgtt gtcttcgttg
     1621 tactttttgt gtttcctaca tgttctaagt gaacctgtta ctatgtgttc cgtgtatacg
     1681 agggccaaca gccagggacc tgcaagggtt ccaaaagatc ccaggtgtcc accctgtccg
     1741 gatggaaaaa gcccagcgca ggccagcaag tcctggatag tttctttcgg ccccacatcc
     1801 cctgctgatg cacccagcct caacagtgca acacagtgat gcctctggaa gcccccaccc
     1861 cctgagaatc ctgtttaata aagtgctgat ttttgtagtc a
//
LOCUS       XM_032607451            2442 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X3, mRNA.
ACCESSION   XM_032607451
VERSION     XM_032607451.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2442
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741241"
     CDS             734..2380
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X1"
                     /protein_id="XP_032463342.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDAGLA
                     RQQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRA
                     YAVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRR
                     LQEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVL
                     CRVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCP
                     VQSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFP
                     RKVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQ
                     RKALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGAR
                     WLTREEFHTAAVSTAMKKALPLLSSLYFLCFLHVLSEPVTMCSVYTRANSQGPARVPK
                     DPRCPPCPDGKSPAQASKSWIVSFGPTSPADAPSLNSATQ"
     misc_feature    944..2158
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 gttgaccttg aggggttttg gacatgattc ctgctaccgt gagtgttgtc cctaccgtaa
       61 actagccctt tcccaagggc tcttcttccc accaaggact ctcaaccctt tatctctttg
      121 attatttgct gtttccagtc catcttcaac ctttctctcg agtcttttca ttattctgaa
      181 ttgtttggat ttttcccatt ctggaaaaag gggaacctcc ttttactcta ccccatccca
      241 aattagttaa caagtattat atacaatttg cctggcaccg tgctcggctc tggggacaca
      301 acagccaaca aaagataccc agtcctagct tatatggagt tttacagtta agtgggggaa
      361 gcagacactg atcaaagaat cacaaataaa tatggaatta aaattggtat aagggcaaca
      421 atggagggca acacaagagg gtaagactgg gggggatcag atttggacat ttaagtcaag
      481 acctgaaaaa tgagtaactg ttaggtagaa catagaagag ctctccaagc agaggaaatg
      541 gactgggtga ggcctcaagg agaacagaca cttgggggtt ttgaaccaac tatttcagga
      601 caacatagct gttccgtagt gagcgagggg gatggggctt gttggagcct acaaagctta
      661 tgttaagagg attggcttct aagagaaatg ggtgtgacag ccaaagccct ctccagtggc
      721 ctacaagtca atcatgagga agccacgagc agctgtggga agtcgaagtc gttgcaggaa
      781 gcaggcatcc agccaggagg gaagggagaa acgtgccctc agcagcagcc aggccaagct
      841 gtctgcacct gacgcaggcc tggccaggca gcaggaggag gtgagattgc aggcccctgt
      901 ctccccgtac catctattcg gagacacagc tgaggtgaca gtcttccgga agagcctgct
      961 gagctggtat gaccgagaga agcgggacct accctggaga aggcgggtgg agggtgaggt
     1021 ggacctggac aggcgggcat acgctgtgtg ggtctcagag gtcatgctgc agcagaccca
     1081 ggttgccacg gtgatcgact attataaccg atggatgcag aagtggccaa cgctgcagga
     1141 cctggccagt gcttccttgg aggaggtaaa ccagctctgg gctggcctgg gctattactc
     1201 tcgaggccgg cggctacagg aaggagcccg gaaggtggta gaggagctag ggggccacat
     1261 gccacgtaca gcagagaccc tgcagtggct cctgcctggt gtggggcggt acacagccag
     1321 agccattgct tccattgcct ttggccaggc aaccggtgtg gtggatggga acgtagtacg
     1381 ggtgctatgc cgtgtccgag ccattggtgc tgatcccagc agcacccttg tttcccagca
     1441 gctctggagc ctagcccagc agctggtgga gccagcccgg ccaggggact ttaatcaagc
     1501 agccatggag ctgggggcca cagtgtgcac cccgcagcgc ccgctctgca gccagtgccc
     1561 tgtgcagagc ctgtgccggg cacgccagag ggtggagcgg gagcagctct cagcctcacg
     1621 gagcccgcca ggcagtcgtg acgtggagga gtgtgctccc aacactggac agtgccagct
     1681 gtgtgcgcct cccacagagc cctgggacca gaccctggga gtggccaact ttcccagaaa
     1741 ggtcagtcgc aggcccccca gggaggagtg ctctgccacc tgtgttctgg agcagcccag
     1801 ggcccttggg ggtgcccgaa ttctgctggt gcagaggccc aactcaggtc tgctggcagg
     1861 actgtgggag ttcccgtctg tgactgcaga gccctcaggg cagcaccagc gcaaggccct
     1921 gctgcgggaa ctgcagagtt gggttgggcc cgtcccggcc acccgccttc ggcacctggg
     1981 acaggtggtc cacaccttct ctcacatcaa gctgacatat caagtatacg gtctggccct
     2041 ggaagaacag accccagtgg ccattgtacc acctggagct cgctggctga cccgggagga
     2101 gtttcacacc gctgctgtct ccaccgccat gaaaaaggca ctacctttgt tgtcttcgtt
     2161 gtactttttg tgtttcctac atgttctaag tgaacctgtt actatgtgtt ccgtgtatac
     2221 gagggccaac agccagggac ctgcaagggt tccaaaagat cccaggtgtc caccctgtcc
     2281 ggatggaaaa agcccagcgc aggccagcaa gtcctggata gtttctttcg gccccacatc
     2341 ccctgctgat gcacccagcc tcaacagtgc aacacagtga tgcctctgga agcccccacc
     2401 ccctgagaat cctgtttaat aaagtgctga tttttgtagt ca
//
LOCUS       XM_032607460            1795 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X4, mRNA.
ACCESSION   XM_032607460
VERSION     XM_032607460.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1795
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741241"
     CDS             87..1733
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X1"
                     /protein_id="XP_032463351.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDAGLA
                     RQQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRA
                     YAVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRR
                     LQEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVL
                     CRVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCP
                     VQSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFP
                     RKVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQ
                     RKALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGAR
                     WLTREEFHTAAVSTAMKKALPLLSSLYFLCFLHVLSEPVTMCSVYTRANSQGPARVPK
                     DPRCPPCPDGKSPAQASKSWIVSFGPTSPADAPSLNSATQ"
     misc_feature    297..1511
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 taccctgtct tcatcgattc ggccacgggg tggggatccc cggaggatgt ggcgctgcct
       61 gagctaagct taaagcacgc tcaatcatga ggaagccacg agcagctgtg ggaagtcgaa
      121 gtcgttgcag gaagcaggca tccagccagg agggaaggga gaaacgtgcc ctcagcagca
      181 gccaggccaa gctgtctgca cctgacgcag gcctggccag gcagcaggag gaggtgagat
      241 tgcaggcccc tgtctccccg taccatctat tcggagacac agctgaggtg acagtcttcc
      301 ggaagagcct gctgagctgg tatgaccgag agaagcggga cctaccctgg agaaggcggg
      361 tggagggtga ggtggacctg gacaggcggg catacgctgt gtgggtctca gaggtcatgc
      421 tgcagcagac ccaggttgcc acggtgatcg actattataa ccgatggatg cagaagtggc
      481 caacgctgca ggacctggcc agtgcttcct tggaggaggt aaaccagctc tgggctggcc
      541 tgggctatta ctctcgaggc cggcggctac aggaaggagc ccggaaggtg gtagaggagc
      601 tagggggcca catgccacgt acagcagaga ccctgcagtg gctcctgcct ggtgtggggc
      661 ggtacacagc cagagccatt gcttccattg cctttggcca ggcaaccggt gtggtggatg
      721 ggaacgtagt acgggtgcta tgccgtgtcc gagccattgg tgctgatccc agcagcaccc
      781 ttgtttccca gcagctctgg agcctagccc agcagctggt ggagccagcc cggccagggg
      841 actttaatca agcagccatg gagctggggg ccacagtgtg caccccgcag cgcccgctct
      901 gcagccagtg ccctgtgcag agcctgtgcc gggcacgcca gagggtggag cgggagcagc
      961 tctcagcctc acggagcccg ccaggcagtc gtgacgtgga ggagtgtgct cccaacactg
     1021 gacagtgcca gctgtgtgcg cctcccacag agccctggga ccagaccctg ggagtggcca
     1081 actttcccag aaaggtcagt cgcaggcccc ccagggagga gtgctctgcc acctgtgttc
     1141 tggagcagcc cagggccctt gggggtgccc gaattctgct ggtgcagagg cccaactcag
     1201 gtctgctggc aggactgtgg gagttcccgt ctgtgactgc agagccctca gggcagcacc
     1261 agcgcaaggc cctgctgcgg gaactgcaga gttgggttgg gcccgtcccg gccacccgcc
     1321 ttcggcacct gggacaggtg gtccacacct tctctcacat caagctgaca tatcaagtat
     1381 acggtctggc cctggaagaa cagaccccag tggccattgt accacctgga gctcgctggc
     1441 tgacccggga ggagtttcac accgctgctg tctccaccgc catgaaaaag gcactacctt
     1501 tgttgtcttc gttgtacttt ttgtgtttcc tacatgttct aagtgaacct gttactatgt
     1561 gttccgtgta tacgagggcc aacagccagg gacctgcaag ggttccaaaa gatcccaggt
     1621 gtccaccctg tccggatgga aaaagcccag cgcaggccag caagtcctgg atagtttctt
     1681 tcggccccac atcccctgct gatgcaccca gcctcaacag tgcaacacag tgatgcctct
     1741 ggaagccccc accccctgag aatcctgttt aataaagtgc tgatttttgt agtca
//
LOCUS       XM_032607468            1844 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X5, mRNA.
ACCESSION   XM_032607468
VERSION     XM_032607468.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1844
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741241"
     CDS             139..1782
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X2"
                     /protein_id="XP_032463359.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDGLAR
                     QQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRAY
                     AVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRL
                     QEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVLC
                     RVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCPV
                     QSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFPR
                     KVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQR
                     KALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGARW
                     LTREEFHTAAVSTAMKKALPLLSSLYFLCFLHVLSEPVTMCSVYTRANSQGPARVPKD
                     PRCPPCPDGKSPAQASKSWIVSFGPTSPADAPSLNSATQ"
     misc_feature    346..1560
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 tggcgcggtg gagtcagcct ggcgcgcgct aggagcctat tggctggtgt gggccgattc
       61 accgcccgga ttggatggag ccacgccccc tggagttcgt ctgggagctg ggcgctggag
      121 atcgcgcagg agtcaatcat gaggaagcca cgagcagctg tgggaagtcg aagtcgttgc
      181 aggaagcagg catccagcca ggagggaagg gagaaacgtg ccctcagcag cagccaggcc
      241 aagctgtctg cacctgacgg cctggccagg cagcaggagg aggtgagatt gcaggcccct
      301 gtctccccgt accatctatt cggagacaca gctgaggtga cagtcttccg gaagagcctg
      361 ctgagctggt atgaccgaga gaagcgggac ctaccctgga gaaggcgggt ggagggtgag
      421 gtggacctgg acaggcgggc atacgctgtg tgggtctcag aggtcatgct gcagcagacc
      481 caggttgcca cggtgatcga ctattataac cgatggatgc agaagtggcc aacgctgcag
      541 gacctggcca gtgcttcctt ggaggaggta aaccagctct gggctggcct gggctattac
      601 tctcgaggcc ggcggctaca ggaaggagcc cggaaggtgg tagaggagct agggggccac
      661 atgccacgta cagcagagac cctgcagtgg ctcctgcctg gtgtggggcg gtacacagcc
      721 agagccattg cttccattgc ctttggccag gcaaccggtg tggtggatgg gaacgtagta
      781 cgggtgctat gccgtgtccg agccattggt gctgatccca gcagcaccct tgtttcccag
      841 cagctctgga gcctagccca gcagctggtg gagccagccc ggccagggga ctttaatcaa
      901 gcagccatgg agctgggggc cacagtgtgc accccgcagc gcccgctctg cagccagtgc
      961 cctgtgcaga gcctgtgccg ggcacgccag agggtggagc gggagcagct ctcagcctca
     1021 cggagcccgc caggcagtcg tgacgtggag gagtgtgctc ccaacactgg acagtgccag
     1081 ctgtgtgcgc ctcccacaga gccctgggac cagaccctgg gagtggccaa ctttcccaga
     1141 aaggtcagtc gcaggccccc cagggaggag tgctctgcca cctgtgttct ggagcagccc
     1201 agggcccttg ggggtgcccg aattctgctg gtgcagaggc ccaactcagg tctgctggca
     1261 ggactgtggg agttcccgtc tgtgactgca gagccctcag ggcagcacca gcgcaaggcc
     1321 ctgctgcggg aactgcagag ttgggttggg cccgtcccgg ccacccgcct tcggcacctg
     1381 ggacaggtgg tccacacctt ctctcacatc aagctgacat atcaagtata cggtctggcc
     1441 ctggaagaac agaccccagt ggccattgta ccacctggag ctcgctggct gacccgggag
     1501 gagtttcaca ccgctgctgt ctccaccgcc atgaaaaagg cactaccttt gttgtcttcg
     1561 ttgtactttt tgtgtttcct acatgttcta agtgaacctg ttactatgtg ttccgtgtat
     1621 acgagggcca acagccaggg acctgcaagg gttccaaaag atcccaggtg tccaccctgt
     1681 ccggatggaa aaagcccagc gcaggccagc aagtcctgga tagtttcttt cggccccaca
     1741 tcccctgctg atgcacccag cctcaacagt gcaacacagt gatgcctctg gaagccccca
     1801 ccccctgaga atcctgttta ataaagtgct gatttttgta gtca
//
LOCUS       XM_032607479            1782 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X6, mRNA.
ACCESSION   XM_032607479
VERSION     XM_032607479.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1782
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741241"
     CDS             142..1689
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X3"
                     /protein_id="XP_032463370.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDAGLA
                     RQQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRA
                     YAVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRR
                     LQEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVL
                     CRVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCP
                     VQSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFP
                     RKVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQ
                     RKALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGAR
                     WLTREEFHTAAVSTAMKKVFRVYEGQQPGTCKGSKRSQVSTLSGWKKPSAGQQVLDSF
                     FRPHIPC"
     misc_feature    352..1554
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 gtctggcgcg gtggagtcag cctggcgcgc gctaggagcc tattggctgg tgtgggccga
       61 ttcaccgccc ggattggatg gagccacgcc ccctggagtt cgtctgggag ctgggcgctg
      121 gagatcgcgc aggagtcaat catgaggaag ccacgagcag ctgtgggaag tcgaagtcgt
      181 tgcaggaagc aggcatccag ccaggaggga agggagaaac gtgccctcag cagcagccag
      241 gccaagctgt ctgcacctga cgcaggcctg gccaggcagc aggaggaggt gagattgcag
      301 gcccctgtct ccccgtacca tctattcgga gacacagctg aggtgacagt cttccggaag
      361 agcctgctga gctggtatga ccgagagaag cgggacctac cctggagaag gcgggtggag
      421 ggtgaggtgg acctggacag gcgggcatac gctgtgtggg tctcagaggt catgctgcag
      481 cagacccagg ttgccacggt gatcgactat tataaccgat ggatgcagaa gtggccaacg
      541 ctgcaggacc tggccagtgc ttccttggag gaggtaaacc agctctgggc tggcctgggc
      601 tattactctc gaggccggcg gctacaggaa ggagcccgga aggtggtaga ggagctaggg
      661 ggccacatgc cacgtacagc agagaccctg cagtggctcc tgcctggtgt ggggcggtac
      721 acagccagag ccattgcttc cattgccttt ggccaggcaa ccggtgtggt ggatgggaac
      781 gtagtacggg tgctatgccg tgtccgagcc attggtgctg atcccagcag cacccttgtt
      841 tcccagcagc tctggagcct agcccagcag ctggtggagc cagcccggcc aggggacttt
      901 aatcaagcag ccatggagct gggggccaca gtgtgcaccc cgcagcgccc gctctgcagc
      961 cagtgccctg tgcagagcct gtgccgggca cgccagaggg tggagcggga gcagctctca
     1021 gcctcacgga gcccgccagg cagtcgtgac gtggaggagt gtgctcccaa cactggacag
     1081 tgccagctgt gtgcgcctcc cacagagccc tgggaccaga ccctgggagt ggccaacttt
     1141 cccagaaagg tcagtcgcag gccccccagg gaggagtgct ctgccacctg tgttctggag
     1201 cagcccaggg cccttggggg tgcccgaatt ctgctggtgc agaggcccaa ctcaggtctg
     1261 ctggcaggac tgtgggagtt cccgtctgtg actgcagagc cctcagggca gcaccagcgc
     1321 aaggccctgc tgcgggaact gcagagttgg gttgggcccg tcccggccac ccgccttcgg
     1381 cacctgggac aggtggtcca caccttctct cacatcaagc tgacatatca agtatacggt
     1441 ctggccctgg aagaacagac cccagtggcc attgtaccac ctggagctcg ctggctgacc
     1501 cgggaggagt ttcacaccgc tgctgtctcc accgccatga aaaaggtgtt ccgtgtatac
     1561 gagggccaac agccagggac ctgcaagggt tccaaaagat cccaggtgtc caccctgtcc
     1621 ggatggaaaa agcccagcgc aggccagcaa gtcctggata gtttctttcg gccccacatc
     1681 ccctgctgat gcacccagcc tcaacagtgc aacacagtga tgcctctgga agcccccacc
     1741 ccctgagaat cctgtttaat aaagtgctga tttttgtagt ca
//
LOCUS       XM_032607490            1784 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X7, mRNA.
ACCESSION   XM_032607490
VERSION     XM_032607490.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1784
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741241"
     CDS             147..1691
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X4"
                     /protein_id="XP_032463381.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDGLAR
                     QQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRAY
                     AVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRL
                     QEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVLC
                     RVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCPV
                     QSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFPR
                     KVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQR
                     KALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGARW
                     LTREEFHTAAVSTAMKKVFRVYEGQQPGTCKGSKRSQVSTLSGWKKPSAGQQVLDSFF
                     RPHIPC"
     misc_feature    354..1556
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 ctcgggtctg gcgcggtgga gtcagcctgg cgcgcgctag gagcctattg gctggtgtgg
       61 gccgattcac cgcccggatt ggatggagcc acgccccctg gagttcgtct gggagctggg
      121 cgctggagat cgcgcaggag tcaatcatga ggaagccacg agcagctgtg ggaagtcgaa
      181 gtcgttgcag gaagcaggca tccagccagg agggaaggga gaaacgtgcc ctcagcagca
      241 gccaggccaa gctgtctgca cctgacggcc tggccaggca gcaggaggag gtgagattgc
      301 aggcccctgt ctccccgtac catctattcg gagacacagc tgaggtgaca gtcttccgga
      361 agagcctgct gagctggtat gaccgagaga agcgggacct accctggaga aggcgggtgg
      421 agggtgaggt ggacctggac aggcgggcat acgctgtgtg ggtctcagag gtcatgctgc
      481 agcagaccca ggttgccacg gtgatcgact attataaccg atggatgcag aagtggccaa
      541 cgctgcagga cctggccagt gcttccttgg aggaggtaaa ccagctctgg gctggcctgg
      601 gctattactc tcgaggccgg cggctacagg aaggagcccg gaaggtggta gaggagctag
      661 ggggccacat gccacgtaca gcagagaccc tgcagtggct cctgcctggt gtggggcggt
      721 acacagccag agccattgct tccattgcct ttggccaggc aaccggtgtg gtggatggga
      781 acgtagtacg ggtgctatgc cgtgtccgag ccattggtgc tgatcccagc agcacccttg
      841 tttcccagca gctctggagc ctagcccagc agctggtgga gccagcccgg ccaggggact
      901 ttaatcaagc agccatggag ctgggggcca cagtgtgcac cccgcagcgc ccgctctgca
      961 gccagtgccc tgtgcagagc ctgtgccggg cacgccagag ggtggagcgg gagcagctct
     1021 cagcctcacg gagcccgcca ggcagtcgtg acgtggagga gtgtgctccc aacactggac
     1081 agtgccagct gtgtgcgcct cccacagagc cctgggacca gaccctggga gtggccaact
     1141 ttcccagaaa ggtcagtcgc aggcccccca gggaggagtg ctctgccacc tgtgttctgg
     1201 agcagcccag ggcccttggg ggtgcccgaa ttctgctggt gcagaggccc aactcaggtc
     1261 tgctggcagg actgtgggag ttcccgtctg tgactgcaga gccctcaggg cagcaccagc
     1321 gcaaggccct gctgcgggaa ctgcagagtt gggttgggcc cgtcccggcc acccgccttc
     1381 ggcacctggg acaggtggtc cacaccttct ctcacatcaa gctgacatat caagtatacg
     1441 gtctggccct ggaagaacag accccagtgg ccattgtacc acctggagct cgctggctga
     1501 cccgggagga gtttcacacc gctgctgtct ccaccgccat gaaaaaggtg ttccgtgtat
     1561 acgagggcca acagccaggg acctgcaagg gttccaaaag atcccaggtg tccaccctgt
     1621 ccggatggaa aaagcccagc gcaggccagc aagtcctgga tagtttcttt cggccccaca
     1681 tcccctgctg atgcacccag cctcaacagt gcaacacagt gatgcctctg gaagccccca
     1741 ccccctgaga atcctgttta ataaagtgct gatttttgta gtca
//
LOCUS       XM_032607499            1825 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X8, mRNA.
ACCESSION   XM_032607499
VERSION     XM_032607499.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1825
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741241"
     CDS             188..1732
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X4"
                     /protein_id="XP_032463390.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDGLAR
                     QQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRAY
                     AVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRL
                     QEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVLC
                     RVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCPV
                     QSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFPR
                     KVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQR
                     KALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGARW
                     LTREEFHTAAVSTAMKKVFRVYEGQQPGTCKGSKRSQVSTLSGWKKPSAGQQVLDSFF
                     RPHIPC"
     misc_feature    395..1597
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 aaggggcaag ctgccaggga gggtggagag ctcacggcgt tccaggaagt gaaagaagcc
       61 gggacggaga caggagatga ggctgcggag gttgagagcg accggctagc aggaacactt
      121 ttgaaacaat ccgttcgcgt gataataggg atttgaatta agcctccggt agggacagat
      181 ttcaatcatg aggaagccac gagcagctgt gggaagtcga agtcgttgca ggaagcaggc
      241 atccagccag gagggaaggg agaaacgtgc cctcagcagc agccaggcca agctgtctgc
      301 acctgacggc ctggccaggc agcaggagga ggtgagattg caggcccctg tctccccgta
      361 ccatctattc ggagacacag ctgaggtgac agtcttccgg aagagcctgc tgagctggta
      421 tgaccgagag aagcgggacc taccctggag aaggcgggtg gagggtgagg tggacctgga
      481 caggcgggca tacgctgtgt gggtctcaga ggtcatgctg cagcagaccc aggttgccac
      541 ggtgatcgac tattataacc gatggatgca gaagtggcca acgctgcagg acctggccag
      601 tgcttccttg gaggaggtaa accagctctg ggctggcctg ggctattact ctcgaggccg
      661 gcggctacag gaaggagccc ggaaggtggt agaggagcta gggggccaca tgccacgtac
      721 agcagagacc ctgcagtggc tcctgcctgg tgtggggcgg tacacagcca gagccattgc
      781 ttccattgcc tttggccagg caaccggtgt ggtggatggg aacgtagtac gggtgctatg
      841 ccgtgtccga gccattggtg ctgatcccag cagcaccctt gtttcccagc agctctggag
      901 cctagcccag cagctggtgg agccagcccg gccaggggac tttaatcaag cagccatgga
      961 gctgggggcc acagtgtgca ccccgcagcg cccgctctgc agccagtgcc ctgtgcagag
     1021 cctgtgccgg gcacgccaga gggtggagcg ggagcagctc tcagcctcac ggagcccgcc
     1081 aggcagtcgt gacgtggagg agtgtgctcc caacactgga cagtgccagc tgtgtgcgcc
     1141 tcccacagag ccctgggacc agaccctggg agtggccaac tttcccagaa aggtcagtcg
     1201 caggcccccc agggaggagt gctctgccac ctgtgttctg gagcagccca gggcccttgg
     1261 gggtgcccga attctgctgg tgcagaggcc caactcaggt ctgctggcag gactgtggga
     1321 gttcccgtct gtgactgcag agccctcagg gcagcaccag cgcaaggccc tgctgcggga
     1381 actgcagagt tgggttgggc ccgtcccggc cacccgcctt cggcacctgg gacaggtggt
     1441 ccacaccttc tctcacatca agctgacata tcaagtatac ggtctggccc tggaagaaca
     1501 gaccccagtg gccattgtac cacctggagc tcgctggctg acccgggagg agtttcacac
     1561 cgctgctgtc tccaccgcca tgaaaaaggt gttccgtgta tacgagggcc aacagccagg
     1621 gacctgcaag ggttccaaaa gatcccaggt gtccaccctg tccggatgga aaaagcccag
     1681 cgcaggccag caagtcctgg atagtttctt tcggccccac atcccctgct gatgcaccca
     1741 gcctcaacag tgcaacacag tgatgcctct ggaagccccc accccctgag aatcctgttt
     1801 aataaagtgc tgatttttgt agtca
//
LOCUS       XR_004346093            1852 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X9, misc_RNA.
ACCESSION   XR_004346093
VERSION     XR_004346093.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1852
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741241"
     misc_RNA        1..1852
                     /gene="MUTYH"
                     /product="mutY DNA glycosylase, transcript variant X9"
                     /db_xref="GeneID:116741241"
ORIGIN      
        1 tggcgcggtg gagtcagcct ggcgcgcgct aggagcctat tggctggtgt gggccgattc
       61 accgcccgga ttggatggag ccacgccccc tggagttcgt ctgggagctg ggcgctggag
      121 atcgcgcagg agtcaatcat gaggaagcca cgagcagctg tgggaagtcg aagtcgttgc
      181 aggaagcagg catccagcca ggagggaagg gagaaacgtg ccctcagcag cagccaggcc
      241 aagctgtctg cacctgacgc aggcctggcc aggcagcagg aggaggtgag attgcaggcc
      301 cctgtctccc cgtaccatct attcggagac acagctgagg tgacagtctt ccggaagagc
      361 ctgctgagct ggtatgaccg agagaagcgg gacctaccct ggagaaggcg ggtggagggt
      421 gaggtggacc tggacaggcg ggcatacgct gtgtgggtct cagaggtcat gctgcagcag
      481 acccaggttg ccacggtgat cgactattat aaccgatgga tgcagaagtg gccaacgctg
      541 caggacctgg ccagtgcttc cttggaggag gtaaaccagc tctgggctgg cctgggctat
      601 tactctcgag gccggcggct acaggaagga gcccggaagg tggtagagga gctagggggc
      661 cacatgccac gtacagcaga gaccctgcag tggctcctgc ctggtgtggg gcggtacaca
      721 gccagagcca ttgcttccat tgcctttggc caggcaaccg gtgtggtgga tgggaacgta
      781 gtacgggtgc tatgccgtgt ccgagccatt ggtgctgatc ccagcagcac ccttgtttcc
      841 cagcagctct ggagcctagc ccagcagctg gtggagccag cccggccagg ggactttaat
      901 caagcagcca tggagctggg ggccacagtg tgcaccccgc agcgcccgct ctgcagccag
      961 tgccctgtgc agagcctgtg ccgggcacgc cagagggtgg agcgggagca gctctcagcc
     1021 tcacggagcc cgccaggcag tcgtgacgtg gaggagtgtg ctcccaacac tggacagtgc
     1081 cagctgtgtg cgcctcccac agagccctgg gaccagaccc tgggagtggc caactttccc
     1141 agaaaggtca gtcgcaggcc ccccagggag gagtgctctg ccacctgtgt tctggagcag
     1201 cccagggccc ttgggggtgc ccgaattctg ctggtgcaga ggcccaactc aggtctgctg
     1261 gcaggactgt gggagttccc gtctgtgact gcagagccct cagggcagca ccagcgcaag
     1321 gccctgctgc gggaactgca gagttgggtt gggcccgtcc cggccacccg ccttcggcac
     1381 ctgggacagg tggtccacac cttctctcac atcaagctga catatcaagt atacggtctg
     1441 gccctggaag aacagacccc agtggccatt gtaccacctg gagctcgctg gctgacccgg
     1501 gaggagtttc acaccgctgc tgtctccacc gccatgaaaa aggcactacc tttgttgtct
     1561 tcgttgtact ttttgtgttt cctacatgtt ctaagtgaac ctgttactat gtgttccgtg
     1621 tatacgaggg ccaacagcca gggacctgca aggtgagtgt cttggccctc acccagccat
     1681 ctctctccag gaccaaatcc acaggttttc agtgagggtt ccaaaagatc ccaggtgtcc
     1741 accctgtccg gatggaaaaa gcccagcgca ggccagcaag tcctggatag tttctttcgg
     1801 ccccacatcc cctgctgatg cacccagcct caacagtgca acacagtgat gc
//
LOCUS       XM_032607510            1784 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mutY DNA glycosylase (MUTYH), transcript
            variant X10, mRNA.
ACCESSION   XM_032607510
VERSION     XM_032607510.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1784
                     /gene="MUTYH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741241"
     CDS             139..1647
                     /gene="MUTYH"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X5"
                     /protein_id="XP_032463401.1"
                     /db_xref="GeneID:116741241"
                     /translation="MRKPRAAVGSRSRCRKQASSQEGREKRALSSSQAKLSAPDAGLA
                     RQQEEVRLQAPVSPYHLFGDTAEVTVFRKSLLSWYDREKRDLPWRRRVEGEVDLDRRA
                     YAVWVSEVMLQQTQVATVIDYYNRWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRR
                     LQEGARKVVEELGGHMPRTAETLQWLLPGVGRYTARAIASIAFGQATGVVDGNVVRVL
                     CRVRAIGADPSSTLVSQQLWSLAQQLVEPARPGDFNQAAMELGATVCTPQRPLCSQCP
                     VQSLCRARQRVEREQLSASRSPPGSRDVEECAPNTGQCQLCAPPTEPWDQTLGVANFP
                     RKVSRRPPREECSATCVLEQPRALGGARILLVQRPNSGLLAGLWEFPSVTAEPSGQHQ
                     RKALLRELQSWVGPVPATRLRHLGQVVHTFSHIKLTYQVYGLALEEQTPVAIVPPGAR
                     WLTREEFHTAAVSTAMKKVFRVYEGQQPGTCKVSVLALTQPSLSRTKSTGFQ"
     misc_feature    349..1551
                     /gene="MUTYH"
                     /note="Adenine-specific DNA glycosylase, acts on AG and
                     A-oxoG pairs [Replication, recombination and repair];
                     Region: MutY; COG1194"
                     /db_xref="CDD:440807"
ORIGIN      
        1 tggcgcggtg gagtcagcct ggcgcgcgct aggagcctat tggctggtgt gggccgattc
       61 accgcccgga ttggatggag ccacgccccc tggagttcgt ctgggagctg ggcgctggag
      121 atcgcgcagg agtcaatcat gaggaagcca cgagcagctg tgggaagtcg aagtcgttgc
      181 aggaagcagg catccagcca ggagggaagg gagaaacgtg ccctcagcag cagccaggcc
      241 aagctgtctg cacctgacgc aggcctggcc aggcagcagg aggaggtgag attgcaggcc
      301 cctgtctccc cgtaccatct attcggagac acagctgagg tgacagtctt ccggaagagc
      361 ctgctgagct ggtatgaccg agagaagcgg gacctaccct ggagaaggcg ggtggagggt
      421 gaggtggacc tggacaggcg ggcatacgct gtgtgggtct cagaggtcat gctgcagcag
      481 acccaggttg ccacggtgat cgactattat aaccgatgga tgcagaagtg gccaacgctg
      541 caggacctgg ccagtgcttc cttggaggag gtaaaccagc tctgggctgg cctgggctat
      601 tactctcgag gccggcggct acaggaagga gcccggaagg tggtagagga gctagggggc
      661 cacatgccac gtacagcaga gaccctgcag tggctcctgc ctggtgtggg gcggtacaca
      721 gccagagcca ttgcttccat tgcctttggc caggcaaccg gtgtggtgga tgggaacgta
      781 gtacgggtgc tatgccgtgt ccgagccatt ggtgctgatc ccagcagcac ccttgtttcc
      841 cagcagctct ggagcctagc ccagcagctg gtggagccag cccggccagg ggactttaat
      901 caagcagcca tggagctggg ggccacagtg tgcaccccgc agcgcccgct ctgcagccag
      961 tgccctgtgc agagcctgtg ccgggcacgc cagagggtgg agcgggagca gctctcagcc
     1021 tcacggagcc cgccaggcag tcgtgacgtg gaggagtgtg ctcccaacac tggacagtgc
     1081 cagctgtgtg cgcctcccac agagccctgg gaccagaccc tgggagtggc caactttccc
     1141 agaaaggtca gtcgcaggcc ccccagggag gagtgctctg ccacctgtgt tctggagcag
     1201 cccagggccc ttgggggtgc ccgaattctg ctggtgcaga ggcccaactc aggtctgctg
     1261 gcaggactgt gggagttccc gtctgtgact gcagagccct cagggcagca ccagcgcaag
     1321 gccctgctgc gggaactgca gagttgggtt gggcccgtcc cggccacccg ccttcggcac
     1381 ctgggacagg tggtccacac cttctctcac atcaagctga catatcaagt atacggtctg
     1441 gccctggaag aacagacccc agtggccatt gtaccacctg gagctcgctg gctgacccgg
     1501 gaggagtttc acaccgctgc tgtctccacc gccatgaaaa aggtgttccg tgtatacgag
     1561 ggccaacagc cagggacctg caaggtgagt gtcttggccc tcacccagcc atctctctcc
     1621 aggaccaaat ccacaggttt tcagtgaggg ttccaaaaga tcccaggtgt ccaccctgtc
     1681 cggatggaaa aagcccagcg caggccagca agtcctggat agtttctttc ggccccacat
     1741 cccctgctga tgcacccagc ctcaacagtg caacacagtg atgc
//
LOCUS       XM_032607524            1917 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus target of EGR1, exonuclease (TOE1),
            transcript variant X1, mRNA.
ACCESSION   XM_032607524
VERSION     XM_032607524.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1917
                     /gene="TOE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741271"
     CDS             87..1619
                     /gene="TOE1"
                     /codon_start=1
                     /product="target of EGR1 protein 1 isoform X1"
                     /protein_id="XP_032463415.1"
                     /db_xref="GeneID:116741271"
                     /translation="MAADGDDGVASAPAVSDGGASQSTKSGEELVVQVPVVDVQSDNF
                     KEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCIEERYKAVCHAARTRSILSLGL
                     ACFKQQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNQQYAQGIPYHK
                     GNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYAHLPESLGTFTADL
                     CEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSPHLTLEFCSYPSS
                     MRAHIDYRCCMPPATYRIHSTSICDNFSAYGWCPLGPQCPRSHDIDLIIDTDEAVVED
                     KRRRRRRREKRRRSLLGLPEKQTSGETEDGPPTKQVCRVGLKPEEIEQEVAEDETGNQ
                     PGSKQGHKNDLEMEQRAARPDTADMASSEAPESQVNPNPVPGDGLHRAGFDAFMTGYV
                     MAYVGVGQGPQPCNSEPWLPECHNKVYLSGKAVPLTVAKSQFSRSSKAHNQKMKLAWG
                     SS"
     misc_feature    207..881
                     /gene="TOE1"
                     /note="CAF1 family ribonuclease; Region: CAF1; pfam04857"
                     /db_xref="CDD:461457"
ORIGIN      
        1 ccgtccccga ctgcaggagc ggagtgagga gacgaagagg aagtcccgcg tgcacactga
       61 ctatacaagc gagggacctc ggtgtcatgg ccgccgacgg tgacgatggc gtagcctcag
      121 ctccagccgt ctctgacggt ggtgccagcc aaagcacaaa atctggggag gagctagtag
      181 tccaggttcc cgtggtggat gtgcaaagtg acaacttcaa ggagatgtgg ccatccctcc
      241 tgctggccat aaagacggct agctttgtgg ctgtggacac ggaactgagt gggcttgggg
      301 acaggaagag tttgctgaac cagtgcatcg aggaacgtta caaggccgtg tgtcatgctg
      361 ccaggacccg ttctatcctc tccctgggcc tcgcctgctt caagcagcag ccagacaagg
      421 gtgaacactc atacctggcc caggtgttca atctgaccct gctgtgcatg gaagagtatg
      481 tcatagaacc aaagtctgtg cagttcctgg tacagcatgg cttcaacttc aaccagcagt
      541 acgcccaggg tatcccctac cacaagggca atgacaaggg tgatgagagc cagagccaat
      601 cagtgaggac actattcctg gagctaatcc gggcccgccg gcccctggta ctacacaacg
      661 gtcttataga cttggtgttc ctgtaccaga acttctatgc acacctgcct gagagcttgg
      721 gtacctttac tgctgaccta tgtgaaatgt tcccagctgg catttatgac accaaatatg
      781 ctgctgagtt tcacgcccgc ttcgtggcct cctacctaga atatgccttc cggaaatgtg
      841 agcgggaaaa tgggaagcag cgggcagctg gcagcccaca cctcaccctg gagttctgca
      901 gctatccttc tagcatgagg gcccatattg actaccgctg ctgcatgccc cctgcaacct
      961 accgtattca ttccaccagc atctgtgaca acttctcggc ctatggctgg tgccccctgg
     1021 gaccacagtg tcctcggtcc catgatattg accttatcat tgacactgat gaagctgtgg
     1081 tggaggacaa gaggcgacgg cgacgacgta gagagaaacg gcggaggtct ttgttgggcc
     1141 tgcctgagaa acagacttct ggggaaaccg aggatggtcc tcccaccaag caggtctgta
     1201 gggttggcct caagcctgag gaaattgagc aggaggtggc tgaggatgag actgggaacc
     1261 aacctggctc taagcaaggt cacaaaaatg acttggagat ggagcagaga gcagcaaggc
     1321 ctgacacagc tgacatggcc agctcggaag ctccagagag tcaagtcaat cctaacccag
     1381 tgcctgggga tggattgcat cgggctggtt ttgatgcctt tatgacaggt tacgtgatgg
     1441 cctacgtggg agtgggccaa ggaccccagc cctgtaactc tgaaccatgg ctacctgaat
     1501 gccacaacaa ggtatacctg agtggcaaag ctgtccccct cacagtggct aagagccagt
     1561 tctcccgttc ttccaaagcc cacaaccaga agatgaagct ggcttggggc agcagctgac
     1621 ccaacttcta cccagcactc agggcccagg aagagaagct gagggtggaa cagaggggtc
     1681 tggatccctc tagcctgtga gtgtcctact cccaactact aggggacggg gacagggtcc
     1741 tggcagagat actgctgcat cactcatgga cctttgcctt tactccagag gatgaggaac
     1801 aaggatacaa gtaagaaggc tgaccagcac ctgtaacaca gactttattc atttttaaat
     1861 ctcaaagtgt cctgggaaag tttcaaaaaa aatcaacaga aacaagatat gaaaata
//
LOCUS       XM_032607533            1839 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus target of EGR1, exonuclease (TOE1),
            transcript variant X2, mRNA.
ACCESSION   XM_032607533
VERSION     XM_032607533.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1839
                     /gene="TOE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741271"
     CDS             76..1566
                     /gene="TOE1"
                     /codon_start=1
                     /product="target of EGR1 protein 1 isoform X2"
                     /protein_id="XP_032463424.1"
                     /db_xref="GeneID:116741271"
                     /translation="MAADGDDGVASAPAVSDGGASQSTKSGEELVVQVPVVDVQSDNF
                     KEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQTRSILSLGLACFKQQPDKGEHSY
                     LAQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNQQYAQGIPYHKGNDKGDESQSQSVR
                     TLFLELIRARRPLVLHNGLIDLVFLYQNFYAHLPESLGTFTADLCEMFPAGIYDTKYA
                     AEFHARFVASYLEYAFRKCERENGKQRAAGSPHLTLEFCSYPSSMRAHIDYRCCMPPA
                     TYRIHSTSICDNFSAYGWCPLGPQCPRSHDIDLIIDTDEAVVEDKRRRRRRREKRRRS
                     LLGLPEKQTSGETEDGPPTKQVCRVGLKPEEIEQEVAEDETGNQPGSKQGHKNDLEME
                     QRAARPDTADMASSEAPESQVNPNPVPGDGLHRAGFDAFMTGYVMAYVGVGQGPQPCN
                     SEPWLPECHNKVYLSGKAVPLTVAKSQFSRSSKAHNQKMKLAWGSS"
     misc_feature    196..828
                     /gene="TOE1"
                     /note="CAF1 family ribonuclease; Region: CAF1; pfam04857"
                     /db_xref="CDD:461457"
ORIGIN      
        1 tgcaggagcg gagtgaggag acgaagagga agtcccgcgt gcacactgac tatacaagcg
       61 agggacctcg gtgtcatggc cgccgacggt gacgatggcg tagcctcagc tccagccgtc
      121 tctgacggtg gtgccagcca aagcacaaaa tctggggagg agctagtagt ccaggttccc
      181 gtggtggatg tgcaaagtga caacttcaag gagatgtggc catccctcct gctggccata
      241 aagacggcta gctttgtggc tgtggacacg gaactgagtg ggcttgggga caggaagagt
      301 ttgctgaacc agacccgttc tatcctctcc ctgggcctcg cctgcttcaa gcagcagcca
      361 gacaagggtg aacactcata cctggcccag gtgttcaatc tgaccctgct gtgcatggaa
      421 gagtatgtca tagaaccaaa gtctgtgcag ttcctggtac agcatggctt caacttcaac
      481 cagcagtacg cccagggtat cccctaccac aagggcaatg acaagggtga tgagagccag
      541 agccaatcag tgaggacact attcctggag ctaatccggg cccgccggcc cctggtacta
      601 cacaacggtc ttatagactt ggtgttcctg taccagaact tctatgcaca cctgcctgag
      661 agcttgggta cctttactgc tgacctatgt gaaatgttcc cagctggcat ttatgacacc
      721 aaatatgctg ctgagtttca cgcccgcttc gtggcctcct acctagaata tgccttccgg
      781 aaatgtgagc gggaaaatgg gaagcagcgg gcagctggca gcccacacct caccctggag
      841 ttctgcagct atccttctag catgagggcc catattgact accgctgctg catgccccct
      901 gcaacctacc gtattcattc caccagcatc tgtgacaact tctcggccta tggctggtgc
      961 cccctgggac cacagtgtcc tcggtcccat gatattgacc ttatcattga cactgatgaa
     1021 gctgtggtgg aggacaagag gcgacggcga cgacgtagag agaaacggcg gaggtctttg
     1081 ttgggcctgc ctgagaaaca gacttctggg gaaaccgagg atggtcctcc caccaagcag
     1141 gtctgtaggg ttggcctcaa gcctgaggaa attgagcagg aggtggctga ggatgagact
     1201 gggaaccaac ctggctctaa gcaaggtcac aaaaatgact tggagatgga gcagagagca
     1261 gcaaggcctg acacagctga catggccagc tcggaagctc cagagagtca agtcaatcct
     1321 aacccagtgc ctggggatgg attgcatcgg gctggttttg atgcctttat gacaggttac
     1381 gtgatggcct acgtgggagt gggccaagga ccccagccct gtaactctga accatggcta
     1441 cctgaatgcc acaacaaggt atacctgagt ggcaaagctg tccccctcac agtggctaag
     1501 agccagttct cccgttcttc caaagcccac aaccagaaga tgaagctggc ttggggcagc
     1561 agctgaccca acttctaccc agcactcagg gcccaggaag agaagctgag ggtggaacag
     1621 aggggtctgg atccctctag cctgtgagtg tcctactccc aactactagg ggacggggac
     1681 agggtcctgg cagagatact gctgcatcac tcatggacct ttgcctttac tccagaggat
     1741 gaggaacaag gatacaagta agaaggctga ccagcacctg taacacagac tttattcatt
     1801 tttaaatctc aaagtgtcct gggaaagttt caaaaaaaa
//
LOCUS       XM_032607543            2173 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus target of EGR1, exonuclease (TOE1),
            transcript variant X3, mRNA.
ACCESSION   XM_032607543
VERSION     XM_032607543.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2173
                     /gene="TOE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741271"
     CDS             481..1875
                     /gene="TOE1"
                     /codon_start=1
                     /product="target of EGR1 protein 1 isoform X3"
                     /protein_id="XP_032463434.1"
                     /db_xref="GeneID:116741271"
                     /translation="MWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCIEERYKAVCH
                     AARTRSILSLGLACFKQQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLVQHGFNF
                     NQQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYAH
                     LPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSP
                     HLTLEFCSYPSSMRAHIDYRCCMPPATYRIHSTSICDNFSAYGWCPLGPQCPRSHDID
                     LIIDTDEAVVEDKRRRRRRREKRRRSLLGLPEKQTSGETEDGPPTKQVCRVGLKPEEI
                     EQEVAEDETGNQPGSKQGHKNDLEMEQRAARPDTADMASSEAPESQVNPNPVPGDGLH
                     RAGFDAFMTGYVMAYVGVGQGPQPCNSEPWLPECHNKVYLSGKAVPLTVAKSQFSRSS
                     KAHNQKMKLAWGSS"
     misc_feature    481..1137
                     /gene="TOE1"
                     /note="CAF1 family ribonuclease; Region: CAF1; pfam04857"
                     /db_xref="CDD:461457"
ORIGIN      
        1 cgtccccgac tgcaggagcg gagtgaggag acgaagagga agtcccgcgt gcacactgac
       61 tatacaagcg agggacctcg gtgtcatggc cgccgacggt gacgatggcg tagcctcagc
      121 tccagccgtc tctgacggtt ttgatgctga gggggaagaa attttcccag agtctcacat
      181 aagccactgg aagacccagg ctttctctcc ccaaattcag gacactgttc actccaaggc
      241 ctgtgtatag agcatatgtg atatgtttga ggagaaagct gccatttctt gccttgaggg
      301 aaactgcccc tgcccccagc catggcctag cttggtatct tttctcttag gcccttgcct
      361 gagcattaac atccatcacc ctccttatcc ccaggtggtg ccagccaaag cacaaaatct
      421 ggggaggagc tagtagtcca ggttcccgtg gtggatgtgc aaagtgacaa cttcaaggag
      481 atgtggccat ccctcctgct ggccataaag acggctagct ttgtggctgt ggacacggaa
      541 ctgagtgggc ttggggacag gaagagtttg ctgaaccagt gcatcgagga acgttacaag
      601 gccgtgtgtc atgctgccag gacccgttct atcctctccc tgggcctcgc ctgcttcaag
      661 cagcagccag acaagggtga acactcatac ctggcccagg tgttcaatct gaccctgctg
      721 tgcatggaag agtatgtcat agaaccaaag tctgtgcagt tcctggtaca gcatggcttc
      781 aacttcaacc agcagtacgc ccagggtatc ccctaccaca agggcaatga caagggtgat
      841 gagagccaga gccaatcagt gaggacacta ttcctggagc taatccgggc ccgccggccc
      901 ctggtactac acaacggtct tatagacttg gtgttcctgt accagaactt ctatgcacac
      961 ctgcctgaga gcttgggtac ctttactgct gacctatgtg aaatgttccc agctggcatt
     1021 tatgacacca aatatgctgc tgagtttcac gcccgcttcg tggcctccta cctagaatat
     1081 gccttccgga aatgtgagcg ggaaaatggg aagcagcggg cagctggcag cccacacctc
     1141 accctggagt tctgcagcta tccttctagc atgagggccc atattgacta ccgctgctgc
     1201 atgccccctg caacctaccg tattcattcc accagcatct gtgacaactt ctcggcctat
     1261 ggctggtgcc ccctgggacc acagtgtcct cggtcccatg atattgacct tatcattgac
     1321 actgatgaag ctgtggtgga ggacaagagg cgacggcgac gacgtagaga gaaacggcgg
     1381 aggtctttgt tgggcctgcc tgagaaacag acttctgggg aaaccgagga tggtcctccc
     1441 accaagcagg tctgtagggt tggcctcaag cctgaggaaa ttgagcagga ggtggctgag
     1501 gatgagactg ggaaccaacc tggctctaag caaggtcaca aaaatgactt ggagatggag
     1561 cagagagcag caaggcctga cacagctgac atggccagct cggaagctcc agagagtcaa
     1621 gtcaatccta acccagtgcc tggggatgga ttgcatcggg ctggttttga tgcctttatg
     1681 acaggttacg tgatggccta cgtgggagtg ggccaaggac cccagccctg taactctgaa
     1741 ccatggctac ctgaatgcca caacaaggta tacctgagtg gcaaagctgt ccccctcaca
     1801 gtggctaaga gccagttctc ccgttcttcc aaagcccaca accagaagat gaagctggct
     1861 tggggcagca gctgacccaa cttctaccca gcactcaggg cccaggaaga gaagctgagg
     1921 gtggaacaga ggggtctgga tccctctagc ctgtgagtgt cctactccca actactaggg
     1981 gacggggaca gggtcctggc agagatactg ctgcatcact catggacctt tgcctttact
     2041 ccagaggatg aggaacaagg atacaagtaa gaaggctgac cagcacctgt aacacagact
     2101 ttattcattt ttaaatctca aagtgtcctg ggaaagtttc aaaaaaaatc aacagaaaca
     2161 agatatgaaa ata
//
LOCUS       XM_032607554            2017 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus target of EGR1, exonuclease (TOE1),
            transcript variant X4, mRNA.
ACCESSION   XM_032607554
VERSION     XM_032607554.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2017
                     /gene="TOE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741271"
     CDS             325..1719
                     /gene="TOE1"
                     /codon_start=1
                     /product="target of EGR1 protein 1 isoform X3"
                     /protein_id="XP_032463445.1"
                     /db_xref="GeneID:116741271"
                     /translation="MWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCIEERYKAVCH
                     AARTRSILSLGLACFKQQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLVQHGFNF
                     NQQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYAH
                     LPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSP
                     HLTLEFCSYPSSMRAHIDYRCCMPPATYRIHSTSICDNFSAYGWCPLGPQCPRSHDID
                     LIIDTDEAVVEDKRRRRRRREKRRRSLLGLPEKQTSGETEDGPPTKQVCRVGLKPEEI
                     EQEVAEDETGNQPGSKQGHKNDLEMEQRAARPDTADMASSEAPESQVNPNPVPGDGLH
                     RAGFDAFMTGYVMAYVGVGQGPQPCNSEPWLPECHNKVYLSGKAVPLTVAKSQFSRSS
                     KAHNQKMKLAWGSS"
     misc_feature    325..981
                     /gene="TOE1"
                     /note="CAF1 family ribonuclease; Region: CAF1; pfam04857"
                     /db_xref="CDD:461457"
ORIGIN      
        1 cgtccccgac tgcaggagcg gagtgaggag acgaagagga agtcccgcgt gcacactgac
       61 tatacaagcg agggacctcg gtgtcatggc cgccgacggt gacgatggcg tagcctcagc
      121 tccagccgtc tctgacggtt ttgatgctga gggggaagaa attttcccag agtctcacat
      181 aagccactgg aagacccagg ctttctctcc ccaaattcag gacactgttc actccaaggt
      241 ggtgccagcc aaagcacaaa atctggggag gagctagtag tccaggttcc cgtggtggat
      301 gtgcaaagtg acaacttcaa ggagatgtgg ccatccctcc tgctggccat aaagacggct
      361 agctttgtgg ctgtggacac ggaactgagt gggcttgggg acaggaagag tttgctgaac
      421 cagtgcatcg aggaacgtta caaggccgtg tgtcatgctg ccaggacccg ttctatcctc
      481 tccctgggcc tcgcctgctt caagcagcag ccagacaagg gtgaacactc atacctggcc
      541 caggtgttca atctgaccct gctgtgcatg gaagagtatg tcatagaacc aaagtctgtg
      601 cagttcctgg tacagcatgg cttcaacttc aaccagcagt acgcccaggg tatcccctac
      661 cacaagggca atgacaaggg tgatgagagc cagagccaat cagtgaggac actattcctg
      721 gagctaatcc gggcccgccg gcccctggta ctacacaacg gtcttataga cttggtgttc
      781 ctgtaccaga acttctatgc acacctgcct gagagcttgg gtacctttac tgctgaccta
      841 tgtgaaatgt tcccagctgg catttatgac accaaatatg ctgctgagtt tcacgcccgc
      901 ttcgtggcct cctacctaga atatgccttc cggaaatgtg agcgggaaaa tgggaagcag
      961 cgggcagctg gcagcccaca cctcaccctg gagttctgca gctatccttc tagcatgagg
     1021 gcccatattg actaccgctg ctgcatgccc cctgcaacct accgtattca ttccaccagc
     1081 atctgtgaca acttctcggc ctatggctgg tgccccctgg gaccacagtg tcctcggtcc
     1141 catgatattg accttatcat tgacactgat gaagctgtgg tggaggacaa gaggcgacgg
     1201 cgacgacgta gagagaaacg gcggaggtct ttgttgggcc tgcctgagaa acagacttct
     1261 ggggaaaccg aggatggtcc tcccaccaag caggtctgta gggttggcct caagcctgag
     1321 gaaattgagc aggaggtggc tgaggatgag actgggaacc aacctggctc taagcaaggt
     1381 cacaaaaatg acttggagat ggagcagaga gcagcaaggc ctgacacagc tgacatggcc
     1441 agctcggaag ctccagagag tcaagtcaat cctaacccag tgcctgggga tggattgcat
     1501 cgggctggtt ttgatgcctt tatgacaggt tacgtgatgg cctacgtggg agtgggccaa
     1561 ggaccccagc cctgtaactc tgaaccatgg ctacctgaat gccacaacaa ggtatacctg
     1621 agtggcaaag ctgtccccct cacagtggct aagagccagt tctcccgttc ttccaaagcc
     1681 cacaaccaga agatgaagct ggcttggggc agcagctgac ccaacttcta cccagcactc
     1741 agggcccagg aagagaagct gagggtggaa cagaggggtc tggatccctc tagcctgtga
     1801 gtgtcctact cccaactact aggggacggg gacagggtcc tggcagagat actgctgcat
     1861 cactcatgga cctttgcctt tactccagag gatgaggaac aaggatacaa gtaagaaggc
     1921 tgaccagcac ctgtaacaca gactttattc atttttaaat ctcaaagtgt cctgggaaag
     1981 tttcaaaaaa aatcaacaga aacaagatat gaaaata
//
LOCUS       XM_032607560            2108 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus target of EGR1, exonuclease (TOE1),
            transcript variant X5, mRNA.
ACCESSION   XM_032607560
VERSION     XM_032607560.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2108
                     /gene="TOE1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741271"
     CDS             483..1835
                     /gene="TOE1"
                     /codon_start=1
                     /product="target of EGR1 protein 1 isoform X4"
                     /protein_id="XP_032463451.1"
                     /db_xref="GeneID:116741271"
                     /translation="MWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQTRSILSLGLAC
                     FKQQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNQQYAQGIPYHKGN
                     DKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYAHLPESLGTFTADLCE
                     MFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSPHLTLEFCSYPSSMR
                     AHIDYRCCMPPATYRIHSTSICDNFSAYGWCPLGPQCPRSHDIDLIIDTDEAVVEDKR
                     RRRRRREKRRRSLLGLPEKQTSGETEDGPPTKQVCRVGLKPEEIEQEVAEDETGNQPG
                     SKQGHKNDLEMEQRAARPDTADMASSEAPESQVNPNPVPGDGLHRAGFDAFMTGYVMA
                     YVGVGQGPQPCNSEPWLPECHNKVYLSGKAVPLTVAKSQFSRSSKAHNQKMKLAWGSS
                     "
     misc_feature    483..1097
                     /gene="TOE1"
                     /note="CAF1 family ribonuclease; Region: CAF1; pfam04857"
                     /db_xref="CDD:461457"
ORIGIN      
        1 cccgtccccg actgcaggag cggagtgagg agacgaagag gaagtcccgc gtgcacactg
       61 actatacaag cgagggacct cggtgtcatg gccgccgacg gtgacgatgg cgtagcctca
      121 gctccagccg tctctgacgg ttttgatgct gagggggaag aaattttccc agagtctcac
      181 ataagccact ggaagaccca ggctttctct ccccaaattc aggacactgt tcactccaag
      241 gcctgtgtat agagcatatg tgatatgttt gaggagaaag ctgccatttc ttgccttgag
      301 ggaaactgcc cctgccccca gccatggcct agcttggtat cttttctctt aggcccttgc
      361 ctgagcatta acatccatca ccctccttat ccccaggtgg tgccagccaa agcacaaaat
      421 ctggggagga gctagtagtc caggttcccg tggtggatgt gcaaagtgac aacttcaagg
      481 agatgtggcc atccctcctg ctggccataa agacggctag ctttgtggct gtggacacgg
      541 aactgagtgg gcttggggac aggaagagtt tgctgaacca gacccgttct atcctctccc
      601 tgggcctcgc ctgcttcaag cagcagccag acaagggtga acactcatac ctggcccagg
      661 tgttcaatct gaccctgctg tgcatggaag agtatgtcat agaaccaaag tctgtgcagt
      721 tcctggtaca gcatggcttc aacttcaacc agcagtacgc ccagggtatc ccctaccaca
      781 agggcaatga caagggtgat gagagccaga gccaatcagt gaggacacta ttcctggagc
      841 taatccgggc ccgccggccc ctggtactac acaacggtct tatagacttg gtgttcctgt
      901 accagaactt ctatgcacac ctgcctgaga gcttgggtac ctttactgct gacctatgtg
      961 aaatgttccc agctggcatt tatgacacca aatatgctgc tgagtttcac gcccgcttcg
     1021 tggcctccta cctagaatat gccttccgga aatgtgagcg ggaaaatggg aagcagcggg
     1081 cagctggcag cccacacctc accctggagt tctgcagcta tccttctagc atgagggccc
     1141 atattgacta ccgctgctgc atgccccctg caacctaccg tattcattcc accagcatct
     1201 gtgacaactt ctcggcctat ggctggtgcc ccctgggacc acagtgtcct cggtcccatg
     1261 atattgacct tatcattgac actgatgaag ctgtggtgga ggacaagagg cgacggcgac
     1321 gacgtagaga gaaacggcgg aggtctttgt tgggcctgcc tgagaaacag acttctgggg
     1381 aaaccgagga tggtcctccc accaagcagg tctgtagggt tggcctcaag cctgaggaaa
     1441 ttgagcagga ggtggctgag gatgagactg ggaaccaacc tggctctaag caaggtcaca
     1501 aaaatgactt ggagatggag cagagagcag caaggcctga cacagctgac atggccagct
     1561 cggaagctcc agagagtcaa gtcaatccta acccagtgcc tggggatgga ttgcatcggg
     1621 ctggttttga tgcctttatg acaggttacg tgatggccta cgtgggagtg ggccaaggac
     1681 cccagccctg taactctgaa ccatggctac ctgaatgcca caacaaggta tacctgagtg
     1741 gcaaagctgt ccccctcaca gtggctaaga gccagttctc ccgttcttcc aaagcccaca
     1801 accagaagat gaagctggct tggggcagca gctgacccaa cttctaccca gcactcaggg
     1861 cccaggaaga gaagctgagg gtggaacaga ggggtctgga tccctctagc ctgtgagtgt
     1921 cctactccca actactaggg gacggggaca gggtcctggc agagatactg ctgcatcact
     1981 catggacctt tgcctttact ccagaggatg aggaacaagg atacaagtaa gaaggctgac
     2041 cagcacctgt aacacagact ttattcattt ttaaatctca aagtgtcctg ggaaagtttc
     2101 aaaaaaaa
//
LOCUS       XM_032607573            3369 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 4-hydroxyphenylpyruvate dioxygenase like
            (HPDL), mRNA.
ACCESSION   XM_032607573
VERSION     XM_032607573.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3369
                     /gene="HPDL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 5 Proteins, and
                     76% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741279"
     CDS             1582..2697
                     /gene="HPDL"
                     /codon_start=1
                     /product="4-hydroxyphenylpyruvate dioxygenase-like
                     protein"
                     /protein_id="XP_032463464.1"
                     /db_xref="GeneID:116741279"
                     /translation="MAAPARRLCHIAFHVPAGLPLARDLQRLFGFQPLAVREADGWRQ
                     LALRSGDAVFLVNEGAGPAEPLYGLDPHHAVPSATNLCFDVADAGAAARALAALGCSV
                     PVPPVSMRDEQGAATYAVISSPAGNLSLTLLDRTGFRGPFLPGFRPVPSAPGPGWVSH
                     VDHLTLACTPSSSPKLMRWFHDCLGFHHLPLSPGEDPELGLEVAAESGPGGLRLTALR
                     APTGSAVPTLVLAESLLGVTSRQDQVEQFLARNGGPGLQHVGLYTPNIMKATEGVVGA
                     GGQLLTPPEAYYQQPGKEKQILAAGLEPSLLARQGVLLDGDRGKFLLQVFTKSLFAED
                     TFFLELIQRQGATGFGQGNIRALWQSMQEQAARVQEA"
     misc_feature    1606..2025
                     /gene="HPDL"
                     /note="N-terminal domain of 4-hydroxyphenylpyruvate
                     dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS);
                     Region: HPPD_N_like; cd08342"
                     /db_xref="CDD:319930"
     misc_feature    order(1636..1644,1648..1653,1708..1710,1714..1716,
                     1807..1809)
                     /gene="HPDL"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:319930"
     misc_feature    2053..2670
                     /gene="HPDL"
                     /note="C-terminal domain of 4-hydroxyphenylpyruvate
                     dioxygenase (HppD) and hydroxymandelate synthase (HmaS);
                     Region: HPPD_C_like; cd07250"
                     /db_xref="CDD:319913"
     misc_feature    order(2068..2070,2221..2223,2266..2268,2272..2274,
                     2308..2310,2353..2355,2557..2559,2596..2598,2626..2628,
                     2638..2643)
                     /gene="HPDL"
                     /note="active site"
                     /db_xref="CDD:319913"
ORIGIN      
        1 ttattcccat ttttatagat gacgaaacta agattcagaa gttaagcaat ttgcccaaag
       61 ttatacatgt gctaataagt gttggaggta gatttttaaa cccaggtctg tctggctttt
      121 ggagtccatg ttctccaatt cactggagtg cagagtagca ccaagtacct ttcaccactg
      181 cttcaggtac tgccttcctg gctgtaggcc tgaacaccca gccaggtgtt tttctaagcc
      241 ctgtcccctc atcacatcct tctccctcct gccaatgaaa ctcaacagta agtcatcaca
      301 ccaggctgcc tgacaaatga atctcttttg cattgcctca gaccacaggc atccatccca
      361 actgtctccc caaccttatg ctccattgct cctctgaggg tttggctcac attcctcact
      421 gagcttttgc ttatgccatt tgctcttcat ggaatgccct tccaaaccct tcaagagcta
      481 ccaggtgaag ttccagaaga ctcctaattt cctcaatcca gtgatctcac acagttctca
      541 gtggcaaggc cagaaatgcc cccagaaagc tcctctggcc taatacccag tcaggaagct
      601 ggaaagagca aagagggctt attctagtcc taatagagcc aggagggtga gaaagggtgc
      661 ctgtgcagct gttcctttca gatcctgagc cactgttttt ttctccaaat cttgtttggg
      721 acaagggcgt aaaaaatgtt aagggagaag tggggttgaa aaggtgcagc tgaaagattt
      781 cccaaaagag agatgcattt aggagctata taaatggtct atcttcctat aacataaatt
      841 tctctggacc attttgggga aaaagtgaaa atctgtaact taaagcattt tattctattt
      901 taagttttaa aggaacatta ggcaattaaa agcaaaattc tccaaaaatt ttaagctaaa
      961 acatgaaatt gctaagaaat tccgtgcttg tagagggaaa attcggactc ttcccccgac
     1021 tagggctgat tcccttttct ctgaggttgg ggcatgagtg ggaacccagt acttggaacc
     1081 tagtgaaggc aggtattgtg atctccaggg tccggggatg ggaggctcag tgcccaaagg
     1141 tgtgtggccc agccagaggc cgtgggaagg tcagtgtcca agagtgaggc ccagccagag
     1201 gtcatgggaa gggtcagtcc tatgtccccg gtgtactctc ggccacacag gctgagcgag
     1261 agggtggaga gtggcagtca ctggctccgc ccccctctct cgccccgccc ctgtactggc
     1321 tccgcgtggt tctctagagc cgcagctcag actcggtggt ctccaggcaa ctccagtttg
     1381 gcgtgcttcg gcagagggaa ccgcaagccc ccaagtggtc cgtttgtggc ttctccccga
     1441 agaagatcga ggaacgcggt ctgcaggcaa aattggactc caccggcttc tgacgacaag
     1501 ccagggactg agagtctccg agtcccggac aagtgattgt ccccagggga aggacaggcc
     1561 ggggacgcca tccagaccgc catggccgcg cccgcccgcc gtctgtgcca tatcgctttc
     1621 cacgtgccgg cggggctgcc cctcgcccgg gatctgcagc gcctcttcgg cttccagccc
     1681 ctggcggtgc gggaagcaga cggctggcgg cagctggctc tgcggagcgg cgacgcggtc
     1741 tttttggtga acgagggcgc ggggcccgca gagccgctgt acggcctgga cccgcatcat
     1801 gcggtgccca gtgccacgaa cctgtgcttc gacgtggcgg acgcgggcgc cgccgcccgg
     1861 gcgctggcgg cgctcggctg cagcgtgccg gtgccccctg tcagcatgcg ggatgagcag
     1921 ggcgccgcca cctacgccgt gatcagctcg ccagccggca acctcagcct gacgctgctg
     1981 gaccgcactg gcttccgcgg gccctttctg cccggcttta ggcctgtgcc ctccgcacct
     2041 ggcccaggct gggtcagcca cgtggaccac ctgaccttgg cctgcacccc cagcagctcc
     2101 ccaaaactga tgcgctggtt ccacgactgt ctaggctttc accacctgcc gctgagccca
     2161 ggtgaggatc cggagctggg cctggaggtg gcagcagagt ccgggcccgg ggggctgagg
     2221 ctcaccgccc tgcgggcccc tacgggtagt gctgtcccta ccctcgtgct ggccgagtcc
     2281 ctgctggggg tcaccagccg acaggaccag gtggagcagt tcctggcccg gaacggggga
     2341 cctggactgc agcacgtggg gttatacaca ccaaatatca tgaaagccac tgagggtgtg
     2401 gtaggggccg ggggtcagct cctgactcct cctgaggcct actaccagca gccaggcaag
     2461 gagaagcaga tcctggctgc agggctagag cctagcctgc tggcccgaca gggggtcttg
     2521 ctagatggtg acagaggcaa gtttctgctt caggtcttca ccaagtccct ctttgcagag
     2581 gacactttct tcctggagct gattcagagg cagggggcca ctggatttgg ccagggcaac
     2641 attcgggccc tgtggcagtc catgcaggag caagctgcca gggtccagga agcctgagaa
     2701 gggctgaagc tgggtgtagc cgcctgtcct ggagcaatgg ggagtccagc acagggcctg
     2761 ctggaactga gacacccaca gaggcctgga gtgaaaggct ttgtctttag gagccaggtg
     2821 tggcctccat ctcatcttgc cagaagttga atctcacagg ggtccaaaga gatgggactt
     2881 ttttttaaac tgtgaaacgt ttctcatatt gtctatatct aacatatatg caaaatgtaa
     2941 agaataaagg aattacacaa ttaggaaata gaacataacc aatatttttg aaccctcctt
     3001 gtgtccttct ctgaccccat ttctctccac cacactccca atattatgat taaaaaccct
     3061 ctgcttttct gtattgtttc actgcatatg taatgtatcc caaaataaat ggtttattat
     3121 ttgaggtagg agtctaagac aaaacaaatc ctcctctgtg attcccctct ccctagggac
     3181 cagccactgc aggtgggagg ggctgagtca gagctgagct caactacctg ctctagggtg
     3241 ataacacaac tccaatcaga gctgaccaga gacatggact gagagtgctg gatgtcagcc
     3301 actggcaggg gctccctgca gctgccttct tctcttctgg ggctggagga ggacagatca
     3361 ctcaggaca
//
LOCUS       XM_032607581            5206 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus metabolism of cobalamin associated C
            (MMACHC), transcript variant X1, mRNA.
ACCESSION   XM_032607581
VERSION     XM_032607581.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5206
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5206
                     /gene="MMACHC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 11 long SRA reads, 7
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741286"
     CDS             130..972
                     /gene="MMACHC"
                     /codon_start=1
                     /product="methylmalonic aciduria and homocystinuria type C
                     protein isoform X1"
                     /protein_id="XP_032463472.1"
                     /db_xref="GeneID:116741286"
                     /translation="MEPQVAELKQKIEDTLCPFGFEVYPFQVAWYNALLPPAFHLPLP
                     GPTLAFLVLSTPAMFDRALKPFLQSCHLQPLTDPVDQCVAYHLGRVRESLPEMQVEII
                     ADYEVHPNRRPKILAQTAAHVAGAAYYYQRQDVESDPWGTQHISGVCIHPRFGGWFAI
                     RGAVLLRGIEVPDLPPTKPLDCVPARADRITLLERFNFHWRDWTYRDAVPPQERYSEE
                     QKAFFSTPPAQRLALLGLAQTSEEPSSTSQELHFTTFITKKPQSPSRGWLSPRVSPPA
                     SSGP"
     misc_feature    187..831
                     /gene="MMACHC"
                     /note="Methylmalonic aciduria and homocystinuria type C
                     family; Region: MMACHC; pfam16690"
                     /db_xref="CDD:465235"
     misc_feature    order(229..237,439..441,466..468,472..486,493..495,
                     514..516,520..522,565..567,571..576,601..609,715..717,
                     727..729,742..747)
                     /gene="MMACHC"
                     /note="cobalamin binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:214022"
     misc_feature    order(250..258,346..357,427..435,442..444,448..453,
                     460..462,469..471)
                     /gene="MMACHC"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:214022"
ORIGIN      
        1 agagccaacg aagtcccgct gccgatccca gtagttcttg ggaaatggag tccaagctgc
       61 ctcaaagttt aacgtcccga gttaccttga gactccattc cccagcaggc tcagcgtgta
      121 gcgtgcgcta tggagccgca agtcgcagag ctgaagcaga agattgagga cacgttgtgc
      181 cctttcggct tcgaggttta ccccttccag gtggcatggt acaatgcact cctgcctcca
      241 gccttccacc tgcccctgcc aggacctacc ctagccttcc tggtactcag cacacctgcc
      301 atgtttgacc gggccctcaa gcccttcctg cagagctgcc acctccaacc actgactgac
      361 cctgtggacc agtgtgtggc ctaccacctg ggccgtgtta gagagagcct cccagagatg
      421 caagtagaaa tcatcgctga ctacgaggta cacccaaacc ggcgccccaa gattttggcc
      481 cagacagcag cccatgtggc aggggcagct tattactacc aacgacagga tgtggagtct
      541 gacccttggg gaacccagca catatcaggt gtgtgcatac atcccagatt cgggggctgg
      601 tttgccatcc gaggggccgt gctgctgcga ggaatagagg tgccagacct gccacccaca
      661 aagcccctcg actgtgtacc tgcaagagct gaccggatca ccctgcttga acgcttcaac
      721 ttccattggc gtgactggac ttaccgggat gctgtgccac ctcaggagcg ctactcagaa
      781 gagcagaagg ccttcttttc cactccgcct gcccaacgct tggccttatt gggcttggcc
      841 cagacctcag aggagcctag ctctacatcc caagagcttc atttcaccac attcatcacc
      901 aagaaacctc agagtcccag cagaggctgg ctcagcccca gggtctcacc acctgcgtcc
      961 tctggccctt gataccctcc cctcccctcc cctgtgggat cctcatttat gacagttgca
     1021 cctgctggga cttatttggc tagacaagat tttattgggt acaagatgat catttttgat
     1081 aaagaattat agtagagttc ttaaatgaag ataacaaggc ttaaagaagt ttggtcaaaa
     1141 gaccaaagca gatccagact tgccacctgc cttggaatat gggattatta cctgttacca
     1201 tttctctgca gtgcttcaag atgctacttg ttacagggct taagaagcaa ctatccctta
     1261 aataacggta cctgcctcag agggttctta tggagactga ataaatacga aatagtacct
     1321 ggcatataat gagctattaa aggccccagg aatcctatac tgccgctcat agttcttgct
     1381 tgtctgaata ctggagggct aggtaggctg gggtagccgt gtctggaagg tgtctagaag
     1441 ggcaccacat gatataaaga aggattctca gtcctgaatc tgccctagcc tcaagagccc
     1501 aggaggaatc cacctttgcc ccactgacaa ccctccctca ggacaatgac atgaggataa
     1561 gaactaccct taaatcaagg atagaaaccc cagggaagcc aagaggtgct cagcactgtg
     1621 cttttgacac agaaacctac cctatgaaca ccagcgctgt gtttgtctcc cccttcccct
     1681 tttagttcca aaggtactga agcctctaac tctgatcttt ttacagaacc agtaccaggc
     1741 atttatcaga agaggccaag cttcaggttt tcatacagcc ctcccagtag tgtaaaagta
     1801 aatgtcagta atctcattgg gctcttaacc tgcaacccag cctatagcaa aaattgcagt
     1861 gccttggcca gtactgtagt aggaggcctt gctcttctcc agatatggtg aaatgaaaca
     1921 ccttgctttg aggtccatcc tctgtatgta cttgcatttc ccctcaatat aatttcctga
     1981 ttctgagaca ctctcacacc tcattttccc ctaaagaggg aaagcaaaaa gtaaattcct
     2041 cttacactca aaggctaatg tccccctaaa atgaagaatc aacaaggtct cagctcaagt
     2101 ttaataaaac tacgaaagac caaaagcaat aacctactac tatacaatca gtttgcctgc
     2161 cccataatac agctcaggcc attcccccca gaggaagaaa ggctggcctc cccagcccct
     2221 gcaggaaagg cctgtcctgt cccacaccac atctgggctg agtgcaaggt cttgtgtttt
     2281 aagcatgaca atagtacaaa agaggttttg ttctcatggc cacctactgc agcctggccc
     2341 taaaatggcc cagtgctcac ttctgcttag agaaatattc tttgctcttc tggacatcag
     2401 gcttgatggt atcactgcca ggcttccagc cagctgggca cactgcaaaa gaaaggatac
     2461 taattaataa cctgatcagt ggtgagctcc accctcccaa ggacaagtgg atgcctcaaa
     2521 accaaatgtg agccctaaag agtaacattc aggcaccagg aagcctaccc tgcagtctga
     2581 gatcattcag ccttttagtt caaagctata aatatgtaat ttaatcctca ccagagccct
     2641 aattactatg atacctaatt tgttcacaga gtaactgaaa tttaaagaaa ttaagtaaca
     2701 gcttcaactt tatactttgt tctaaaaata atctgtctaa agcatgtaca gcaaaatatt
     2761 acgattttgt taacagtagg tagtagctaa gtgggtattc atttgttctc agtaatttta
     2821 tgtatgcttc aaaaatgcac cttttgagaa ataagcttaa atgctcttca acagatggtg
     2881 ctggaacagc tggatttcca catgtaaaac aatgaaattg gacatctatt cataccatac
     2941 acaaaaagtt tactcgcaaa tggatcaaca gtctatatat gagctaaaac cataaactct
     3001 ctgaagaaaa cacagggtgg tcaaacttca tgaccttaga tttggaaatg tattcttaga
     3061 catgatactg aaaacacaaa caacagtaaa aaacataagg taaattggac ttgattgaca
     3121 ttaaggactt ttgtagatta aaagacatta tgaagtgagt gaagacaacc cacagaatgg
     3181 gaaaaaatat ttataaatca tatctgataa gggattaata gccaaaattg aaatccagaa
     3241 ctcccacagc tcaacagaca acccaattca aaaatgggca aaggggggct tccctggtgg
     3301 cgcagtggtt gagagtctgc ctgccgatgc aggggacacg ggttcgtgcc ccggtctggg
     3361 aggatcccac atgccgcgga gcggctgggc ccgtgagcca tggccgctgg gcctgcgcgt
     3421 ccggagcctg tcctccgcaa cgggaggggc cacagcagtg agaggcccgc gtaacgcata
     3481 aaaaaaaaaa aaaaaaaaaa aaatgggcaa aggacttgaa agacatatct ccaaagatat
     3541 acaaatggtc caataaacat atgaaaatat gccatcacta gtcaaaacta caatgagata
     3601 ccacttcaca tcccctagga tggctatagt taaaaaaaaa ggaaagtaaa tgttgggaag
     3661 gatgtaaaga acccttggta ttgctggtgg gaatgtaaaa tggtgcatgt gctgtggaaa
     3721 acagtttggc agttcctcaa gaatctaaac atagaattac catgtgaccc agcaattcta
     3781 ctcctatata tagccccaaa gtaactggaa acaaggattc agacaccagt tcaccaatat
     3841 tttagcaata ttattcacaa tagccaaaag gtggaaacaa cctgttaacg gatagataga
     3901 tataactgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tatcggaata
     3961 ttattcagcc tttaaaaaat aataatgttc tgatacatac tacagcctgg ataaaccttg
     4021 aaaacattat gctaggtgaa agaatccaaa cacaaatgga taaatactat atggcttcac
     4081 tcacatgaaa cacctagaat aggcaaattc atagacatag aaagtagaag ttaccaaagg
     4141 ctggagggaa aggggaatgg taagttattg cttcatggtt actactgcct gtttgggatg
     4201 atgaaaaaga gaaacagtgg tgatagatgt acaacactgg gaattaatta atgccactga
     4261 attatgcact taaaaaggta aattaggggc ttccctggtg gcgcagtagt tgagagtctg
     4321 cctgccgatg caggggacat gggttcgtgc cccggtccag gaagatccca catgccacag
     4381 agcggctggg cccgtgaggc atggccgctg agcctgcgcg tccggagcct gtgctccgca
     4441 acgggagagg ccacaacagt gagaggcccg cgtaacgcaa aaaaaaaaaa ggtaaattat
     4501 atataaccac aataaaaatt gattacagta gtgacttgcc cccatactca agaaaaatat
     4561 aagctaaaaa atgacaaagc tatgactgtg taaaccctaa cactaagctg cttcttccct
     4621 ctagcagccc ttcagagatc tgaaagcagc aagcagtttt ccttctcagt gttccttaac
     4681 tctgccaaac aagaatgcct gaaataaggg acaggacctc cacagaaggt cctgcttgtt
     4741 tcactaagta actgcctgct ataccttggt aagcaaaagg tccaagtttg aatctttcgc
     4801 acactttatg cagaaaagaa cctttcaacc tttccaagga tcctaagtta gcaatgctcc
     4861 ttgggcaaac ctgaggaaag tgaggcaagg gaaccaatcg ctgattttct actctatttg
     4921 ctgtttagtc ttctaggagg cacatagtca gcaaagtcca gtaatggagc agcaaaaatc
     4981 tcacttgctc aggtgagaga ggggaagccc ctttcagtcc aaggatgtca cagcctcaga
     5041 tgtcagacac tgcaaacagc agtctgggaa caaggtatgg atggaacaag cactaaatgg
     5101 caaacccagc tgctttacaa aatctccatt tgattgttac acagtcattc gctttagtgg
     5161 caccaaagga tgagaacaca ggtcctaagc ataaacaagc ttccaa
//
LOCUS       XM_032607586            4985 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus metabolism of cobalamin associated C
            (MMACHC), transcript variant X2, mRNA.
ACCESSION   XM_032607586
VERSION     XM_032607586.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4985
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4985
                     /gene="MMACHC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741286"
     CDS             20..751
                     /gene="MMACHC"
                     /codon_start=1
                     /product="methylmalonic aciduria and homocystinuria type C
                     protein isoform X2"
                     /protein_id="XP_032463477.1"
                     /db_xref="GeneID:116741286"
                     /translation="MEPQVAELKQKIEDTLCPFGFEVYPFQVAWYNALLPPAFHLPLP
                     GPTLAFLVLSTPAMFDRALKPFLQSCHLQPLTDPVDQCVAYHLGRVRESLPEMQVEII
                     ADYEHISGVCIHPRFGGWFAIRGAVLLRGIEVPDLPPTKPLDCVPARADRITLLERFN
                     FHWRDWTYRDAVPPQERYSEEQKAFFSTPPAQRLALLGLAQTSEEPSSTSQELHFTTF
                     ITKKPQSPSRGWLSPRVSPPASSGP"
     misc_feature    77..610
                     /gene="MMACHC"
                     /note="Methylmalonic aciduria and homocystinuria type C
                     protein and similar proteins; Region: MMACHC-like;
                     cl17166"
                     /db_xref="CDD:473068"
ORIGIN      
        1 tcagcgtgta gcgtgcgcta tggagccgca agtcgcagag ctgaagcaga agattgagga
       61 cacgttgtgc cctttcggct tcgaggttta ccccttccag gtggcatggt acaatgcact
      121 cctgcctcca gccttccacc tgcccctgcc aggacctacc ctagccttcc tggtactcag
      181 cacacctgcc atgtttgacc gggccctcaa gcccttcctg cagagctgcc acctccaacc
      241 actgactgac cctgtggacc agtgtgtggc ctaccacctg ggccgtgtta gagagagcct
      301 cccagagatg caagtagaaa tcatcgctga ctacgagcac atatcaggtg tgtgcataca
      361 tcccagattc gggggctggt ttgccatccg aggggccgtg ctgctgcgag gaatagaggt
      421 gccagacctg ccacccacaa agcccctcga ctgtgtacct gcaagagctg accggatcac
      481 cctgcttgaa cgcttcaact tccattggcg tgactggact taccgggatg ctgtgccacc
      541 tcaggagcgc tactcagaag agcagaaggc cttcttttcc actccgcctg cccaacgctt
      601 ggccttattg ggcttggccc agacctcaga ggagcctagc tctacatccc aagagcttca
      661 tttcaccaca ttcatcacca agaaacctca gagtcccagc agaggctggc tcagccccag
      721 ggtctcacca cctgcgtcct ctggcccttg ataccctccc ctcccctccc ctgtgggatc
      781 ctcatttatg acagttgcac ctgctgggac ttatttggct agacaagatt ttattgggta
      841 caagatgatc atttttgata aagaattata gtagagttct taaatgaaga taacaaggct
      901 taaagaagtt tggtcaaaag accaaagcag atccagactt gccacctgcc ttggaatatg
      961 ggattattac ctgttaccat ttctctgcag tgcttcaaga tgctacttgt tacagggctt
     1021 aagaagcaac tatcccttaa ataacggtac ctgcctcaga gggttcttat ggagactgaa
     1081 taaatacgaa atagtacctg gcatataatg agctattaaa ggccccagga atcctatact
     1141 gccgctcata gttcttgctt gtctgaatac tggagggcta ggtaggctgg ggtagccgtg
     1201 tctggaaggt gtctagaagg gcaccacatg atataaagaa ggattctcag tcctgaatct
     1261 gccctagcct caagagccca ggaggaatcc acctttgccc cactgacaac cctccctcag
     1321 gacaatgaca tgaggataag aactaccctt aaatcaagga tagaaacccc agggaagcca
     1381 agaggtgctc agcactgtgc ttttgacaca gaaacctacc ctatgaacac cagcgctgtg
     1441 tttgtctccc ccttcccctt ttagttccaa aggtactgaa gcctctaact ctgatctttt
     1501 tacagaacca gtaccaggca tttatcagaa gaggccaagc ttcaggtttt catacagccc
     1561 tcccagtagt gtaaaagtaa atgtcagtaa tctcattggg ctcttaacct gcaacccagc
     1621 ctatagcaaa aattgcagtg ccttggccag tactgtagta ggaggccttg ctcttctcca
     1681 gatatggtga aatgaaacac cttgctttga ggtccatcct ctgtatgtac ttgcatttcc
     1741 cctcaatata atttcctgat tctgagacac tctcacacct cattttcccc taaagaggga
     1801 aagcaaaaag taaattcctc ttacactcaa aggctaatgt ccccctaaaa tgaagaatca
     1861 acaaggtctc agctcaagtt taataaaact acgaaagacc aaaagcaata acctactact
     1921 atacaatcag tttgcctgcc ccataataca gctcaggcca ttccccccag aggaagaaag
     1981 gctggcctcc ccagcccctg caggaaaggc ctgtcctgtc ccacaccaca tctgggctga
     2041 gtgcaaggtc ttgtgtttta agcatgacaa tagtacaaaa gaggttttgt tctcatggcc
     2101 acctactgca gcctggccct aaaatggccc agtgctcact tctgcttaga gaaatattct
     2161 ttgctcttct ggacatcagg cttgatggta tcactgccag gcttccagcc agctgggcac
     2221 actgcaaaag aaaggatact aattaataac ctgatcagtg gtgagctcca ccctcccaag
     2281 gacaagtgga tgcctcaaaa ccaaatgtga gccctaaaga gtaacattca ggcaccagga
     2341 agcctaccct gcagtctgag atcattcagc cttttagttc aaagctataa atatgtaatt
     2401 taatcctcac cagagcccta attactatga tacctaattt gttcacagag taactgaaat
     2461 ttaaagaaat taagtaacag cttcaacttt atactttgtt ctaaaaataa tctgtctaaa
     2521 gcatgtacag caaaatatta cgattttgtt aacagtaggt agtagctaag tgggtattca
     2581 tttgttctca gtaattttat gtatgcttca aaaatgcacc ttttgagaaa taagcttaaa
     2641 tgctcttcaa cagatggtgc tggaacagct ggatttccac atgtaaaaca atgaaattgg
     2701 acatctattc ataccataca caaaaagttt actcgcaaat ggatcaacag tctatatatg
     2761 agctaaaacc ataaactctc tgaagaaaac acagggtggt caaacttcat gaccttagat
     2821 ttggaaatgt attcttagac atgatactga aaacacaaac aacagtaaaa aacataaggt
     2881 aaattggact tgattgacat taaggacttt tgtagattaa aagacattat gaagtgagtg
     2941 aagacaaccc acagaatggg aaaaaatatt tataaatcat atctgataag ggattaatag
     3001 ccaaaattga aatccagaac tcccacagct caacagacaa cccaattcaa aaatgggcaa
     3061 aggggggctt ccctggtggc gcagtggttg agagtctgcc tgccgatgca ggggacacgg
     3121 gttcgtgccc cggtctggga ggatcccaca tgccgcggag cggctgggcc cgtgagccat
     3181 ggccgctggg cctgcgcgtc cggagcctgt cctccgcaac gggaggggcc acagcagtga
     3241 gaggcccgcg taacgcataa aaaaaaaaaa aaaaaaaaaa aatgggcaaa ggacttgaaa
     3301 gacatatctc caaagatata caaatggtcc aataaacata tgaaaatatg ccatcactag
     3361 tcaaaactac aatgagatac cacttcacat cccctaggat ggctatagtt aaaaaaaaag
     3421 gaaagtaaat gttgggaagg atgtaaagaa cccttggtat tgctggtggg aatgtaaaat
     3481 ggtgcatgtg ctgtggaaaa cagtttggca gttcctcaag aatctaaaca tagaattacc
     3541 atgtgaccca gcaattctac tcctatatat agccccaaag taactggaaa caaggattca
     3601 gacaccagtt caccaatatt ttagcaatat tattcacaat agccaaaagg tggaaacaac
     3661 ctgttaacgg atagatagat ataactgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     3721 gtgtgtgtgt atcggaatat tattcagcct ttaaaaaata ataatgttct gatacatact
     3781 acagcctgga taaaccttga aaacattatg ctaggtgaaa gaatccaaac acaaatggat
     3841 aaatactata tggcttcact cacatgaaac acctagaata ggcaaattca tagacataga
     3901 aagtagaagt taccaaaggc tggagggaaa ggggaatggt aagttattgc ttcatggtta
     3961 ctactgcctg tttgggatga tgaaaaagag aaacagtggt gatagatgta caacactggg
     4021 aattaattaa tgccactgaa ttatgcactt aaaaaggtaa attaggggct tccctggtgg
     4081 cgcagtagtt gagagtctgc ctgccgatgc aggggacatg ggttcgtgcc ccggtccagg
     4141 aagatcccac atgccacaga gcggctgggc ccgtgaggca tggccgctga gcctgcgcgt
     4201 ccggagcctg tgctccgcaa cgggagaggc cacaacagtg agaggcccgc gtaacgcaaa
     4261 aaaaaaaaag gtaaattata tataaccaca ataaaaattg attacagtag tgacttgccc
     4321 ccatactcaa gaaaaatata agctaaaaaa tgacaaagct atgactgtgt aaaccctaac
     4381 actaagctgc ttcttccctc tagcagccct tcagagatct gaaagcagca agcagttttc
     4441 cttctcagtg ttccttaact ctgccaaaca agaatgcctg aaataaggga caggacctcc
     4501 acagaaggtc ctgcttgttt cactaagtaa ctgcctgcta taccttggta agcaaaaggt
     4561 ccaagtttga atctttcgca cactttatgc agaaaagaac ctttcaacct ttccaaggat
     4621 cctaagttag caatgctcct tgggcaaacc tgaggaaagt gaggcaaggg aaccaatcgc
     4681 tgattttcta ctctatttgc tgtttagtct tctaggaggc acatagtcag caaagtccag
     4741 taatggagca gcaaaaatct cacttgctca ggtgagagag gggaagcccc tttcagtcca
     4801 aggatgtcac agcctcagat gtcagacact gcaaacagca gtctgggaac aaggtatgga
     4861 tggaacaagc actaaatggc aaacccagct gctttacaaa atctccattt gattgttaca
     4921 cagtcattcg ctttagtggc accaaaggat gagaacacag gtcctaagca taaacaagct
     4981 tccaa
//
LOCUS       XM_032607590            1133 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peroxiredoxin-1 (LOC116741303), mRNA.
ACCESSION   XM_032607590
VERSION     XM_032607590.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1133
                     /gene="LOC116741303"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 21
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116741303"
     CDS             127..951
                     /gene="LOC116741303"
                     /codon_start=1
                     /product="peroxiredoxin-1"
                     /protein_id="XP_032463481.1"
                     /db_xref="GeneID:116741303"
                     /translation="MSSGNAKIGHHAPQFKATAVMPDGQFKDISLSDYKGKYVVFFFY
                     PLDFTFVCPTEIIAFSDKAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNI
                     PLISDPKHTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLV
                     QAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQKLQLLWEESEILREELKLLQ
                     DQLSQHRELLLKQMTEGRQAQAHSWKISRGIPFLTCSPAAFSSRPRALYFKAPRCS"
     misc_feature    148..666
                     /gene="LOC116741303"
                     /note="Peroxiredoxin (PRX) family, Typical 2-Cys PRX
                     subfamily; PRXs are thiol-specific antioxidant (TSA)
                     proteins, which confer a protective role in cells through
                     its peroxidase activity by reducing hydrogen peroxide,
                     peroxynitrite, and organic hydroperoxides; Region:
                     PRX_Typ2cys; cd03015"
                     /db_xref="CDD:239313"
     misc_feature    order(148..150,274..279,286..288,475..477,505..507,
                     544..552,556..564,574..579,598..600,643..654)
                     /gene="LOC116741303"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239313"
     misc_feature    order(268..270,370..375,448..450,454..456,490..492)
                     /gene="LOC116741303"
                     /note="decamer (pentamer of dimers) interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239313"
     misc_feature    order(271..273,280..282,508..510)
                     /gene="LOC116741303"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:239313"
     misc_feature    order(280..282,643..645)
                     /gene="LOC116741303"
                     /note="peroxidatic and resolving cysteines [active]"
                     /db_xref="CDD:239313"
ORIGIN      
        1 cgcacccctg gcccgccctg actctcgcga gagccctaca ggctataaag gccagcgccc
       61 ggcgcatgct ttgcgtgtgt gcttcctgac tgttctttgt ggcttgtgag gagtgctgat
      121 cgcaatatgt cttcaggaaa tgccaaaatt gggcaccatg ccccccagtt caaagcaact
      181 gctgtaatgc cagatggtca attcaaagat atcagcctat ctgactacaa aggaaaatac
      241 gttgtgttct tcttttaccc tcttgacttc acctttgtgt gccccacgga gatcattgct
      301 ttcagtgata aggcagaaga atttaagaaa ctcaactgcc aagtgattgg tgcttctgtg
      361 gattctcact tttgtcacct ggcatggatc aacacaccca agaagcaagg aggactggga
      421 cccatgaaca ttcccttgat atcagacccc aagcacacca ttgctcagga ctatggggtc
      481 ttaaaggctg atgaaggcat ctcattcagg ggccttttta ttattgatga taaaggtatc
      541 cttcgacaga tcaccataaa tgaccttcct gttggccgtt ctgtggatga gacactgaga
      601 ctagttcagg ccttccagtt tactgacaaa catggggaag tgtgcccagc tggctggaag
      661 cctggcagtg ataccatcaa gcctgatgtc cagaagagca aagaatattt ctctaagcag
      721 aagctgcaac tgctgtggga ggagtcagaa attcttcggg aggaattgaa gttgctgcag
      781 gaccagctga gccagcaccg ggagctgctg ctgaaacaaa tgactgaggg gcggcaagct
      841 caggcccaca gctggaagat ctccagaggc ataccctttc taacctgcag cccagcagct
      901 ttcagctcca ggcccagagc cctatacttt aaggctccaa gatgctcctg agtgactgta
      961 aggacttgta agagcagtag gatgatgtct tctttgctca ccttcccctc caaggtcctg
     1021 tttctgggtt cccttcccct cccctcttga tctagctggt gtttgccctc cctaatgagg
     1081 tttgtcactg cctgtccagc cttacccaca agcaataaaa cggtttaatc ctg
//
LOCUS       XM_032607602            1807 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G-patch domain containing 4 (GPATCH4),
            mRNA.
ACCESSION   XM_032607602
VERSION     XM_032607602.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1807
                     /gene="GPATCH4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741335"
     CDS             147..1343
                     /gene="GPATCH4"
                     /codon_start=1
                     /product="G patch domain-containing protein 4"
                     /protein_id="XP_032463493.1"
                     /db_xref="GeneID:116741335"
                     /translation="MSITPEVKSRGMKFAEEQLLKHGWTRGKGLGRKENGITQALRVT
                     LKQDTHGVGHDPAKEFTNYWWNDLFNKTAASLVVKTGQDGVQIRCLSKETTRHDPPKP
                     NLLYQKFVKMATLTSSGEKPDKDLESCSDDNSQGSKPPKILTDEMMLQACEGRTAHKA
                     ARLGITMKAKLARLEAQEQAFLACLKGQDPGVPQLQSESKPPQKKKKKRKRKEEEEAT
                     ATERNAEEYPEHTDQSVRKSKKKKRRHQEESVTDEREGTAVRHEEEATTGTSGLGELK
                     NREQTDQSLRKRKKKRRQREEEDLNMEEAVVDGGTREAESRSCSDRKSRRSKKKRQRH
                     QEEEDVLHVGDEGEEEGGRARIAESKAYTGSSGKGKKRQKQPEEERPGVHTDQRAKKK
                     KQKKRN"
     misc_feature    168..311
                     /gene="GPATCH4"
                     /note="G-patch domain; Region: G-patch; pfam01585"
                     /db_xref="CDD:396249"
ORIGIN      
        1 aacgacctaa acggcacttc cgggaagatg gcggcgcaca gatcatgtct ggcacatgtt
       61 tctgcggaga ggaccttaca ctaacgggaa gatagtgacc ccttctcttc tctggtgagg
      121 gcctgaggac agtgactctt ctcaccatga gcatcacccc agaggtcaag agtcgtggga
      181 tgaagtttgc tgaggagcag ctgctaaagc atggatggac tcgaggcaaa ggcctgggcc
      241 ggaaggagaa tggcatcacc caggccctca gggtaacgct gaagcaggac actcatgggg
      301 tgggacacga ccctgccaaa gagttcacaa actactggtg gaatgatctc ttcaacaaga
      361 ctgcggccag cttggtagtg aaaactgggc aggatggcgt acagataagg tgcctgtcta
      421 aggagaccac ccgtcatgat cctcccaagc ccaacttgct gtatcagaag tttgtgaaga
      481 tggccacact gacttcaagt ggggagaagc cagacaagga cttggaaagc tgcagtgatg
      541 acaacagcca ggggtccaag cctccaaaga ttctgactga tgagatgatg ctccaagcct
      601 gtgaggggcg aacagcacac aaggctgccc gtcttgggat cacgatgaag gctaagcttg
      661 ctcggttaga ggcccaggag caggccttcc tggcttgtct caaaggccag gaccctgggg
      721 tccctcaact gcagtctgag agcaagcccc cacaaaaaaa gaaaaagaaa aggaagcgga
      781 aagaggagga agaggccacg gcaactgaaa ggaatgcaga agagtaccca gaacacactg
      841 accagagtgt caggaaaagc aagaagaaga aaaggcggca tcaagaagaa agtgtcacag
      901 atgagagaga gggaacagct gtaaggcatg aggaagaagc gaccacagga acaagtgggc
      961 ttggggaatt gaaaaacaga gaacaaactg atcagtccct caggaaaagg aagaagaaga
     1021 ggaggcagcg tgaggaagaa gacttgaaca tggaggaggc tgttgtagat ggtgggacca
     1081 gagaagcaga aagcagatca tgcagtgatc ggaaaagtag gagaagcaag aagaaaagac
     1141 agcggcatca ggaggaggag gacgtcttgc atgtagggga tgaaggagag gaggaaggtg
     1201 gcagggctag gatagcagag agcaaggcat acacgggctc aagtggcaaa ggtaagaaga
     1261 ggcagaagca accagaggag gaaagacctg gagtccacac tgaccagaga gcaaaaaaga
     1321 agaaacagaa gaagagaaac tgaaggccag gtcaagatgc agcccgatcg attcctcttc
     1381 aggagttgaa gcctcaggga cctgagttgg tgcaggtctt gtgtaccctc tcagtgagga
     1441 gtccctccca aggaggaaac agctctggaa cagtagtccg ctgagaggag agcggtagtg
     1501 ccgtgtctga cttgagggag caggcacatt cccccttaca gcatctaacc cagagatgct
     1561 gaacctgcac ctgcaaggcc cgggcagcta agggacaagg atgctggggg ctgtgggaac
     1621 gggaatgcag acagcctctg aagggccatc ttggctaaaa gaagttgaaa gtgtagactt
     1681 atgggaaatg tactggtttt ttaattttgt gaaggcgaag aaagacatgc aaattcagcc
     1741 cataggttgc cagtttctaa ctataccaaa ttgaataaac atcagcttgg tctccaagcc
     1801 tatatat
//
LOCUS       XM_032607610            1250 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NAD(P)HX epimerase (NAXE), mRNA.
ACCESSION   XM_032607610
VERSION     XM_032607610.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1250
                     /gene="NAXE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 long SRA reads, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741346"
     CDS             53..919
                     /gene="NAXE"
                     /codon_start=1
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="XP_032463501.1"
                     /db_xref="GeneID:116741346"
                     /translation="MSGLRALLGLGLLVAGPRLSLLRVQAGACRAGATWWGPQRLISG
                     GRGDSEVMASSAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPT
                     SLSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTALVTQCQK
                     MDIPFLGEMPPEPTLIDELYELVVDAIFGFSFKGDVREPFRSILSVLNGLTVPIASID
                     IPSGWDVEKGNSGGIQPDLLISLTAPKKSASQFTGRYHYLGGRFVPPALEKKYQLNLP
                     PYPDTECVYRLQ"
     misc_feature    218..>913
                     /gene="NAXE"
                     /note="pyridoxine (pyridoxamine) 5'-phosphate oxidase;
                     Provisional; Region: PLN03049"
                     /db_xref="CDD:215550"
ORIGIN      
        1 gccgcgcatg cgccaggcgc ggcggagcgg ggccgcgcgc tctgagagct gaatgtccgg
       61 gctgcgggcg ctcctggggc tcgggctgct ggttgcgggc ccgcgcctat cgctcctcag
      121 agtccaggca ggcgcctgtc gcgcgggagc cacctggtgg gggccgcagc ggctgatctc
      181 gggtggccgc ggggactcag aggtcatggc gagctcagca gtgaagtacc tgagccagga
      241 ggaggcccag gccgtggacc aggagctgtt taacgagtac cagttcagcg tggaccaact
      301 tatggagctg gccgggctga gctgtgccac agccattgcc aaggcatatc ctcccacgtc
      361 cttgtccagg agccccccta ctgtcctggt catctgtggc cccgggaata atggaggaga
      421 tggcctggtc tgtgctcgac acctcaaact ctttggctac cagccaacca tctattatcc
      481 taaaaggcct aacaagccac tcttcactgc actggtgacc cagtgccaga aaatggacat
      541 ccctttcctt ggtgaaatgc ccccagagcc cacactgatt gatgaactat acgagctggt
      601 ggtggatgcc atctttggct tcagcttcaa gggtgatgtt cgggagccat tccgcagcat
      661 cctgagtgtc ctgaatggac tcactgtgcc cattgccagc atcgacattc cctcaggatg
      721 ggatgtggag aagggaaact ctggagggat ccagccagac ttgcttatct ccctgacggc
      781 acccaaaaag tctgcaagcc agtttactgg tcgctaccac tacctggggg gtcgtttcgt
      841 gcctcctgct ctggaaaaga agtaccagct gaacctgcca ccctaccctg acaccgagtg
      901 tgtctatcgt ctgcagtgag ggaaggcggg cgggcattct tcccaataga tttagttcct
      961 ctctcccaga actgtggagt cctgggagct cttctggcaa taaaggttaa gagatggcag
     1021 gagccagaga gcaacactgg agatgtggtg ccctctctct gggggaacag tatgcaagag
     1081 gggttgctat gacatttggg ggcaatgaca attcactttc agatgctaaa aaaggctccc
     1141 aagtgaggtg tgctgtcctt tacacacaca caattcttat cggggatgca gacagggagc
     1201 tgggtgaggt tctctgaact ttctccttcc acttaacagc acggcaagac
//
LOCUS       XM_032607622            1644 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 2 member 7
            (SLC2A7), partial mRNA.
ACCESSION   XM_032607622
VERSION     XM_032607622.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 24% of CDS bases
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                VOSU01000011.1     6927431-6927520     c
            91-251              VOSU01000011.1     6923844-6924004     c
            252-373             VOSU01000011.1     6921389-6921510     c
            374-526             VOSU01000011.1     6920191-6920343     c
            527-552             VOSU01000011.1     6918634-6918659     c
            553-649             VOSU01000011.1     6918536-6918632     c
            650-732             VOSU01000011.1     6917974-6918056     c
            733-733             "N"                1-1
            734-837             VOSU01000011.1     6917870-6917973     c
            838-1052            VOSU01000011.1     6917015-6917229     c
            1053-1153           VOSU01000011.1     6915865-6915965     c
            1154-1230           VOSU01000011.1     6914756-6914832     c
            1231-1266           VOSU01000011.1     6910799-6910834     c
            1267-1268           "NN"               1-2
            1269-1297           VOSU01000011.1     6910770-6910798     c
            1298-1347           VOSU01000011.1     6908936-6908985     c
            1348-1348           "N"                1-1
            1349-1422           VOSU01000011.1     6908862-6908935     c
            1423-1644           VOSU01000011.1     6908035-6908256     c
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            <1..1644
                     /gene="SLC2A7"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 3 codons;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:116741357"
     CDS             <1..1644
                     /gene="SLC2A7"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 3 codons;
                     deleted 1 base in 1 codon; substituted 1 base at 1 genomic
                     stop codon"
                     /codon_start=1
                     /transl_except=(pos:400..402,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: solute carrier family 2,
                     facilitated glucose transporter member 7"
                     /protein_id="XP_032463513.1"
                     /db_xref="GeneID:116741357"
                     /translation="STLVLATLSAAFGEAFQYGCNIAVVNTPHEVLKSSYNETYFERH
                     GAFMDEKVLLLLWSCTMSMSPLGVLGGSLLIGLLVDKCGRKGTLLINNDFAIPAVPKG
                     VSKVTKPSEPVIFSRVALGFCAGTSYSALPMXLGELAPKNLRGALGTMTEVFVIVGIF
                     LAQIFGLQAILGNPTDWPVLLALTGVPALFWLPSLPFFPESPRSTLIQKRDEEVRQAL
                     RKLRGWADVEDEMEEMRVEDQAERAEXPLSVLSFFTFLPVCWQLVAIVLPMAGQQLSR
                     VNAANYYADMIYASLGWHGGGSFPVTVGASVVNTAMSFISGSHPQVSLPLGISESVPR
                     RQRRAPQGPLLVALVLGAVGRTEGTCKVTVQGLAWSDGGAFADGIAVGAAGAVQRLGR
                     RRLLLVGYGIRVSALPFQSTVPELSYLGIIXYITGHSIGPSPVPSVVRTEIFLQPSRX
                     AFAVDGAELGLTSVIVGFVFPSIQEVSGAYRFIIFARICLLTAVYIYMVIPETKGRTF
                     VEIKRIFAQRNRVEFLEKKEEITDAGPHIPSLPARETSF"
     misc_feature    16..1533
                     /gene="SLC2A7"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:475125"
     misc_feature    order(52..57,64..69,76..78,214..216,370..375,379..387,
                     394..396,454..456,463..468,475..477,805..807,814..819,
                     826..834,841..843,925..927,937..939,1282..1287,1297..1299,
                     1309..1311,1354..1356,1363..1368,1375..1380,1387..1389)
                     /gene="SLC2A7"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:340990"
ORIGIN      
        1 tccacgctgg tgctggccac gctgagcgca gcctttggcg aggccttcca atacggctgc
       61 aacatcgctg tggttaacac accgcacgag gtcttgaagt cctcttataa tgaaacctac
      121 tttgagcgac acggagcctt catggacgag aaagtcctgc tgctgctgtg gtcctgcacc
      181 atgtccatgt ctcctctggg cgtcttgggg gggtccctgc ttattggcct gctggttgac
      241 aaatgtggca gaaagggaac actgctgatc aacaatgact tcgccatccc tgccgtcccg
      301 aagggagtca gcaaagtgac caaaccttcc gagccggtca tcttttctcg agtggcactg
      361 ggattctgtg caggcacctc ctacagtgcc cttcccatgt agctgggaga gttagctccc
      421 aagaacctta ggggtgctct gggaacaatg acagaggtgt ttgtcatcgt gggaatcttc
      481 ctagcacaga tcttcggcct gcaagccatc ctgggcaacc ctacagactg gcctgtgctc
      541 ttggcactca cgggggtccc cgcactgttt tggctcccct ctctgccatt cttccccgag
      601 agcccgaggt ccaccctgat tcagaaaaga gatgaagaag ttcgacaagc tctgcggaag
      661 ctgagaggct gggcagatgt ggaggacgag atggaagaaa tgcgcgtgga ggaccaggcc
      721 gagagggccg agncgccgct gtctgtgctc agcttcttca cgtttctgcc tgtctgctgg
      781 cagctggtcg ccatcgtctt gcccatggcc ggccagcagc tctccagggt caacgcggcc
      841 aactactacg cggacatgat ctacgcctcc ctcggctggc atggaggcgg ctcattcccc
      901 gtaacagtgg gtgccagcgt ggtcaacaca gcgatgagct tcatctcggg gagccaccca
      961 caagtgtccc tcccattggg catctctgag tcggtgcccc gcagacagag aagagccccc
     1021 cagggtccac tgctggtggc actggtcctg ggggctgttg ggaggacgga ggggacgtgt
     1081 aaagtgaccg tacagggcct ggcgtggagt gacggtggtg cctttgctga tggcattgct
     1141 gtgggtgctg caggcgccgt ccagcggctg ggtaggcggc gtctcctgct ggtcggctac
     1201 ggcatccgcg tctcggcgct gcccttccag agcacggtcc ctgagctgtc ttaccttggc
     1261 atcatcnnct acatcacagg acattccatc gggcccagtc ccgtgccctc cgtggtgagg
     1321 accgagatct tcctgcagcc ctcgcggncc gccttcgcag tggacggggc cgagctcggg
     1381 ctcaccagcg tcatcgtggg cttcgtgttc ccgtccatcc aggaggtcag tggtgcctac
     1441 agattcatta tctttgccag aatctgcctc ctcactgctg tttacatcta catggtcatt
     1501 cctgagacca agggccgaac atttgtggag ataaagcgaa tttttgccca gagaaacaga
     1561 gtggagtttc tggagaagaa agaagaaatc acagatgcgg ggcctcacat accgtctctg
     1621 cctgccaggg agacttcctt ttag
//
LOCUS       XM_032607634            4103 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SHC binding and spindle associated 1 like
            (SHCBP1L), mRNA.
ACCESSION   XM_032607634
VERSION     XM_032607634.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4103
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4103
                     /gene="SHCBP1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116741362"
     CDS             38..2002
                     /gene="SHCBP1L"
                     /codon_start=1
                     /product="testicular spindle-associated protein SHCBP1L"
                     /protein_id="XP_032463525.1"
                     /db_xref="GeneID:116741362"
                     /translation="MASGPRATVPEDSVRTVSPGRRGEKAVSELTGDSVEAGTLKSAA
                     SAVRWVVASPRPVKRKDVQEAAQRRLQLLPGSQAEGRGQGPEEEEEETLLSLPEEDDE
                     KAQPLPPVCVAPMRGMWREEKVALYCDEVLQGCKAEDADDAMCRYLSEKLKLKGKWLG
                     VWKTNPELFFVKYEEASISFVGILVEVTCKLRQSASSCFKVTVSVAEPFSSNIANIPR
                     DLVDEILEELEHSVPLLEVYPVEGQDSDLHDIALALEAVRFFYDFLWRDWDDEESCEN
                     YTALIEERINLWCDIQDGTIPGPIAQRFKKTLEKYKNKRIELIEYQSNIKEDPSAAEA
                     VECWKKYYEIVMLCGLLKMWEDLRLRVHGPFFPRILRRRKGKRDFGKTITHIVAKVMT
                     TDMVKDLSSDTLLQQHDDLDLALDSCYSGDTVVIFPGEYQAVNLALLTDDIVIKGIGK
                     REEIMITSEPSYDSFVVSKADNVKLMHLSLIQQGTVDGIVVVESGHMTLENCVLKCEG
                     TGVCVLTGAALTITDCEITGAQGAGVELYPGSIAILERNEIHHCNNLRTTDSSKSTLG
                     GVNMKVLPAPKLKMTNNHIYNNNGYGVSILQPTEQFFIVAEETLSKGTASGDKKDDNM
                     LSKVMQNLNLEMNNNKIEANLKGAIRIVTS"
     misc_feature    1496..1999
                     /gene="SHCBP1L"
                     /note="Right handed beta helix region; Region: Beta_helix;
                     pfam13229"
                     /db_xref="CDD:463811"
ORIGIN      
        1 actaacggtt gccgctggcc cgcagggggc tgaggagatg gcgtcgggac ccagagccac
       61 ggttcctgaa gactcggtcc gaaccgtcag ccccgggcgg cgaggcgaga aggctgtctc
      121 cgagctcacc ggggactcgg tggaggcggg gaccctgaag agcgccgcgt ctgccgtgcg
      181 gtgggtggtg gcctcccctc gccccgtgaa gcggaaagac gtccaggagg cggcccagcg
      241 gcggctccag ctcctgccgg gctctcaggc cgagggccgg ggacaggggc ccgaggagga
      301 ggaagaggag acccttctgt cgttgccgga ggaggatgac gagaaggcgc agccactgcc
      361 cccagtctgc gtggccccta tgagggggat gtggcgggag gagaaggtgg cgctgtattg
      421 cgacgaggtg ctgcagggct gcaaggcaga agatgctgat gatgctatgt gtagatacct
      481 gtcagaaaaa ttaaagttga aaggcaaatg gcttggagtc tggaaaacta atcctgagtt
      541 attctttgtg aaatatgaag aagcttctat ttcttttgtt ggtatactgg ttgaggtaac
      601 ttgtaaacta cgccaaagcg catcatcttg tttcaaagtt actgtttctg ttgctgagcc
      661 cttttcttct aacattgcaa atattccaag ggatttggtc gatgagattt tggaagaact
      721 agagcatagt gtgcctctct tggaagtgta ccctgttgaa ggacaagatt ctgatttaca
      781 tgatattgct ttggccttgg aagctgtaag gtttttttat gattttcttt ggagggactg
      841 ggatgatgaa gaaagttgtg agaattatac tgctttgatt gaagaaagaa ttaatttgtg
      901 gtgtgatata caagatggaa caatacctgg tcctattgca caacgtttca aaaaaacttt
      961 ggagaagtat aaaaacaagc gaatcgagct cattgagtat cagagcaaca ttaaagaaga
     1021 tccatctgca gcagaggctg ttgaatgctg gaaaaagtac tatgagatag taatgctctg
     1081 tggattattg aaaatgtggg aagatttacg cctcagagtt catgggcctt tctttccaag
     1141 aattctgagg cgtaggaaag gaaaaagaga ctttggaaag actataacac atatcgtagc
     1201 aaaagtgatg actactgaca tggtgaagga cttatcttca gacacacttc tccaacagca
     1261 tgatgatttg gatttggctt tggatagttg ttatagtgga gatacagtag ttatttttcc
     1321 aggagaatat caagctgtaa atcttgcttt attgactgat gacatcgtta taaagggaat
     1381 tggaaagaga gaggaaatta tgattacttc tgaaccttct tatgacagtt ttgtggtgtc
     1441 caaagctgat aatgtgaaat taatgcatct atctttgata caacaaggga cagttgatgg
     1501 tattgtggtg gtggagtctg gtcacatgac tctagaaaac tgtgtattaa aatgtgaagg
     1561 aacaggagtg tgtgttctta caggagctgc tttgacaatt acagactgtg aaataactgg
     1621 tgcccagggt gctggtgttg aactgtatcc tggaagcata gccattttgg aaaggaacga
     1681 aattcatcac tgtaataacc tcagaacaac tgacagttca aaaagcacct taggtggagt
     1741 taatatgaag gttcttccag cacccaagtt gaagatgacc aataatcata tttacaacaa
     1801 caatggctac ggagtaagca ttcttcaacc aactgaacag ttttttattg tagcagaaga
     1861 aaccctcagc aaagggactg cttcaggaga taaaaaagat gataatatgc tctccaaagt
     1921 aatgcaaaat ctgaatctgg aaatgaataa taataaaata gaagcaaacc taaagggggc
     1981 tatcagaata gtaacaagtt aaagcatctg gatctatgtt aaagttttat gtttcagata
     2041 tttaataatt ctcgtatccc acagaaatgg tagttttaat taaatgtgaa acttaatttt
     2101 aaaatttaaa tatttaatgc tttcattgaa tgattcattt taacgttttt taaataagtt
     2161 ttgagatata atttacatat cataaaattc acttttaaaa tatataattc agtggtattt
     2221 agtatatttt tagtatatac catcatcatt aattccaaaa acaactgtgg ttttaaatat
     2281 tgttttatat agtctgagtc caataagaag ctttaggtgc tttatgtaga gaattgaaaa
     2341 aataaaaaaa gtttatggac aatatctgat tcattcccat ttatctgtgc aggtaactgg
     2401 aataagataa gatagcacta tgtttaggct taactatagg aaacaagaaa attcaaaata
     2461 agagaggcaa aaaacaaaga aatgtatttc tccctcaaag tcacacacat tatttcaact
     2521 ttcatgcctc cctccagcta gaatctgatt gcatggctgc atctaactgc aaatgaagct
     2581 aggaaatata atctttaaat tggatggcat gagtcctcta aaatagggtg tttgttttgt
     2641 aagaaaaaac tggtcttttt cacaaagcac agcttacatt gacttcaggg tataaaagaa
     2701 aataagcact caggcttcag tccccaatct ttccttccac aatttgactt ttattcagta
     2761 ctttgtgtta tctgtaactt agcaaaggcg accctgtgtt gctatagaga atctcttgag
     2821 gctgagagtt gaatgaagta tagtagctgt tcttcagtgt ttcattgaat agcttttttt
     2881 tttttaaaca caaggtcttc ttagccaggt gacataattc cacggaggag gccttaacaa
     2941 gaacaatctc tctataatga attttataag ctgtaaaagt ggggattttc cttcacaatc
     3001 ctcttcctct acttccctgt ttttcgcttt aggaagagta tgtgatggac aaagataggc
     3061 tcttttgagt aaacagaaag caatagcctc acaggggcaa acttctcact cattggttac
     3121 ttgcctcctt tctgttgctg ccattggttt ccaaccaatt acttttttcc ccaggcccac
     3181 ttcagaatac agggttttgt tttttttctc ctattctcct atctctaaag catgcacaaa
     3241 gcatttttaa gattttctaa gaaatctgaa ctttgatagt tatttttctc cctccttcac
     3301 tttcccaccc ttattatttt tctctccgtc ataacgaact accacaaatt tagaggttta
     3361 aacatcacca atttatcatc aaacagttct gtaggttgca gttttggcat gggtcccacc
     3421 ggcctaacat cagtgttgac aggggtttgt ttctttctgg aggctttagg ggaggatttg
     3481 tttccttgct catttgggtt gtcggcagaa ttcagtttct tgcagttgta ggactgtttt
     3541 cttgatggtt gtcagctgag ggctgttccc agcttctggt gaccaactgc atctgggtta
     3601 cgtcctcctt cctccatctt caaagccagc aacaatggac tgagtccctt ttctgctttt
     3661 aatttcttct gccttgtctt caatcttatc tctctgagcc aattcttctg ctccctccct
     3721 tccactttta gggactcatg attagattga gcccagattg agcccactcg gataatccag
     3781 gataatttcc ccatctcaag gtccttaact tgaattacat ctgcagagtc ccttttgcca
     3841 tgtaagatat gcattcacag gctctgggaa ttagcatgtg gacatctttg aggagccatt
     3901 attctgttta ccacttgtct taaccaattt tctaggtcaa gggaagacaa atactaattc
     3961 tactcctcaa atgggattta agaagtttcc tctaccagga ccaacccatg catagctctt
     4021 atacatttta aaagagattc taatttagaa caatggcata tgccctgaga aaaccataat
     4081 tcaaaaagaa acatgtacca caa
//
LOCUS       XR_004346116             387 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116741366
            (LOC116741366), ncRNA.
ACCESSION   XR_004346116
VERSION     XR_004346116.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..387
                     /gene="LOC116741366"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116741366"
     ncRNA           1..387
                     /ncRNA_class="lncRNA"
                     /gene="LOC116741366"
                     /product="uncharacterized LOC116741366"
                     /db_xref="GeneID:116741366"
ORIGIN      
        1 tctagctgtg aaatactgca taggggctga cagcacccaa ggagaggaac acaattggga
       61 aaacacctgc ctgccttacc cctgatctgg aaggatactg tgttaaattt ggaatctatt
      121 ttaagttttg tttaggtcga ggggtgtcag aagtgggatc tgaagtgctc tcaatgccac
      181 aggactgata tttcctggaa tcagtgtggt acacccagac cgtcttgcgt tcactgtttc
      241 cacagactgc catctccttc aacttgatga ctcacctgac tttaggcgaa aagtcggaac
      301 cagaattaag aggaaccgag ggagcccatg ctgcaaaata ttgtcttcca aaaaggagag
      361 aggaaaacaa ttcattcatt tttacag
//
LOCUS       XM_032607654             650 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cornichon family AMPA receptor auxiliary
            protein 4 (CNIH4), transcript variant X1, mRNA.
ACCESSION   XM_032607654
VERSION     XM_032607654.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..650
                     /gene="CNIH4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 2 long SRA reads, 7
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741369"
     CDS             61..480
                     /gene="CNIH4"
                     /codon_start=1
                     /product="protein cornichon homolog 4 isoform X1"
                     /protein_id="XP_032463545.1"
                     /db_xref="GeneID:116741369"
                     /translation="MEAVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKL
                     NKWVIPELVGHTIVTVLMLISLHWFIFLLNLPVATWNTYRFIMVPSGNMGVFDPTEIH
                     NRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIND"
     misc_feature    67..450
                     /gene="CNIH4"
                     /note="Cornichon protein; Region: Cornichon; pfam03311"
                     /db_xref="CDD:460883"
ORIGIN      
        1 gctggtccgg gcaccacagc cagtttgacg gaaggagcgg cgcggcggtg gcggagtaga
       61 atggaggcgg tggtgttcgt cttctctctc cttgactgtt gcgcgcttat cttcctctca
      121 gtgtacttca taattacatt gtctgattta gaatgtgatt acattaatgc tagatcatgt
      181 tgctcaaaat taaacaagtg ggtaattccg gaattggttg gccatactat tgtcactgta
      241 ttaatgctca tttcattgca ctggttcatc ttccttctca acttgcctgt tgccacttgg
      301 aatacatatc ggttcattat ggtgccaagt ggtaacatgg gagtgtttga tccaacagaa
      361 atacacaatc gagggcagtt gaagtcacac atgaaagaag ccatgatcaa gcttggtttc
      421 cacctgctct gtttcttcat gtatctttat agtatgattt tagctttgat aaatgactga
      481 agctggagaa gccgtagttg aagtcagccc acactacagt gcacagttga ggagccagag
      541 acgacttaaa tcatccttag aaccatgacc atagcagtat attttttcct ctttgaacaa
      601 aaaatatttt tgctgtattt ttaccatata aagtatttaa aaaacatgaa
//
LOCUS       XM_032607662             997 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cornichon family AMPA receptor auxiliary
            protein 4 (CNIH4), transcript variant X2, mRNA.
ACCESSION   XM_032607662
VERSION     XM_032607662.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..997
                     /gene="CNIH4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741369"
     CDS             591..827
                     /gene="CNIH4"
                     /codon_start=1
                     /product="protein cornichon homolog 4 isoform X2"
                     /protein_id="XP_032463553.1"
                     /db_xref="GeneID:116741369"
                     /translation="MLISLHWFIFLLNLPVATWNTYRFIMVPSGNMGVFDPTEIHNRG
                     QLKSHMKEAMIKLGFHLLCFFMYLYSMILALIND"
     misc_feature    <591..797
                     /gene="CNIH4"
                     /note="Cornichon protein; Region: Cornichon; pfam03311"
                     /db_xref="CDD:460883"
ORIGIN      
        1 agggagcaag gcaggcggcc ggcggccggc gcgggtaccc tgggcgctgg cccggtccgc
       61 cggaccaatg tggcgagccc gggcgggagg aggaccccgg ctgcccaact tcgcccctca
      121 cccggggatc cgagcgggcc tttctcttga agcgcaccgg cccggcctgc ccgccgccgc
      181 tcgcccctgt gacgcctgga cccgctctgc cctgcgcggg ggctggcact tggcctcccc
      241 ttgtggtcct caggagagag gggtcgcggt tttcctcctt ttgggtcctg gagagatcag
      301 agttgtggtt ttttttgcag ctcccttagg ccgggccctt cgccggatgc tgggggtccc
      361 gagaacgacg gctcacgtcc caggggtggt cgctagtggt ctgtcccgcg ctgagctcgg
      421 cggaggcgat ttggcgcctc ttgtcattct ctgggcaaca cccccgctgc cctccccttt
      481 gttctcgcgg gtgttggaac ttgtagcgac ctttcacatc caggagttga ctcattcaaa
      541 aacggtgggt aattccggaa ttggttggcc atactattgt cactgtatta atgctcattt
      601 cattgcactg gttcatcttc cttctcaact tgcctgttgc cacttggaat acatatcggt
      661 tcattatggt gccaagtggt aacatgggag tgtttgatcc aacagaaata cacaatcgag
      721 ggcagttgaa gtcacacatg aaagaagcca tgatcaagct tggtttccac ctgctctgtt
      781 tcttcatgta tctttatagt atgattttag ctttgataaa tgactgaagc tggagaagcc
      841 gtagttgaag tcagcccaca ctacagtgca cagttgagga gccagagacg acttaaatca
      901 tccttagaac catgaccata gcagtatatt ttttcctctt tgaacaaaaa atatttttgc
      961 tgtattttta ccatataaag tatttaaaaa acatgaa
//
LOCUS       XM_032607672             381 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cornichon family AMPA receptor auxiliary
            protein 4 (CNIH4), transcript variant X3, mRNA.
ACCESSION   XM_032607672
VERSION     XM_032607672.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..381
                     /gene="CNIH4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 92% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116741369"
     CDS             37..381
                     /gene="CNIH4"
                     /codon_start=1
                     /product="protein cornichon homolog 4 isoform X3"
                     /protein_id="XP_032463563.1"
                     /db_xref="GeneID:116741369"
                     /translation="MEAVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKL
                     NKWVIPELVGHTIVTVLMLISLHWFIFLLNLPVATWNTYRNTQSRAVEVTHERSHDQA
                     WFPPALFLHVSL"
     misc_feature    43..>303
                     /gene="CNIH4"
                     /note="Cornichon protein; Region: Cornichon; pfam03311"
                     /db_xref="CDD:460883"
ORIGIN      
        1 ttgacggaag gagcggcgcg gcggtggcgg agtagaatgg aggcggtggt gttcgtcttc
       61 tctctccttg actgttgcgc gcttatcttc ctctcagtgt acttcataat tacattgtct
      121 gatttagaat gtgattacat taatgctaga tcatgttgct caaaattaaa caagtgggta
      181 attccggaat tggttggcca tactattgtc actgtattaa tgctcatttc attgcactgg
      241 ttcatcttcc ttctcaactt gcctgttgcc acttggaata catatcgaaa tacacaatcg
      301 agggcagttg aagtcacaca tgaaagaagc catgatcaag cttggtttcc acctgctctg
      361 tttcttcatg tatctttata g
//
LOCUS       XM_032607684            1334 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus trafficking protein particle complex 3
            (TRAPPC3), mRNA.
ACCESSION   XM_032607684
VERSION     XM_032607684.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-182               VOSU01000011.1     29203892-29204073   c
            183-233             VOSU01000011.1     29197062-29197112   c
            234-280             VOSU01000011.1     29197014-29197060   c
            281-380             VOSU01000011.1     29196671-29196770   c
            381-563             VOSU01000011.1     29195408-29195590   c
            564-1334            VOSU01000011.1     29194170-29194940   c
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1334
                     /gene="TRAPPC3"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 12 Proteins, and 94% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741377"
     CDS             141..683
                     /gene="TRAPPC3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: trafficking protein
                     particle complex subunit 3"
                     /protein_id="XP_032463575.1"
                     /db_xref="GeneID:116741377"
                     /translation="MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQL
                     DKMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDE
                     FSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGV
                     TEIRMRFIRRIEDNLPAGEE"
     misc_feature    183..647
                     /gene="TRAPPC3"
                     /note="Bet3-TRAPPC3 subunit of the TRAPP complex; Region:
                     TRAPPC3_bet3; cd14942"
                     /db_xref="CDD:271345"
     misc_feature    order(183..197,201..209,213..218,225..227,267..269,
                     279..281,288..293,300..305,312..314,393..398,402..404,
                     465..467,528..530)
                     /gene="TRAPPC3"
                     /note="TRS31 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271345"
     misc_feature    order(195..197,303..308,315..317,333..347,357..362,
                     369..374,384..389,396..401,528..533,540..545,552..557,
                     570..572)
                     /gene="TRAPPC3"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:271345"
     misc_feature    order(297..302,309..314,318..329,333..335,339..341,
                     561..563)
                     /gene="TRAPPC3"
                     /note="TRS23 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271345"
ORIGIN      
        1 gccccgcggc aggccgcgca ggcgcggtga gtcggtgccg gtcaaacccg aatgctgtgg
       61 gcccgctaac tgggtccagc ggtgttagaa gggggtcacc gagtgggtct gtgttgtggt
      121 ggggtaaggc ggccagcacc atgtcgaggc aggcgaaccg tggcaccgag agcaagaaaa
      181 tgagctctga gctcttcacc ctgacctatg gggctctagt cacccagctg tgcaaggact
      241 atgaaaatga tgaagatgtg aataaacagc tggacaaaat gggctataac attggagtcc
      301 gactgattga agatttcttg gcacggtcaa atgtcgggag gtgccatgac tttcgggaaa
      361 ctgcagatgt cattgccaag gtggcgttca agatgtactt gggcatcact ccaagcatca
      421 ccaattggag cccagctggt gatgaattct ccctcatttt ggaaaataat cccttggtgg
      481 actttgtgga acttcctgat aaccactcat cccttattta ttccaatctc ttgtgtgggg
      541 tgttgcgagg agccttggag atggtccaga tggctgtgga ggccaaattt gtccaggaca
      601 ccctgaaagg agacggtgtg acagaaatcc ggatgaggtt catcaggcgg attgaggaca
      661 acctcccagc tggagaggaa tgaccgtccc caggacttca gcgtagctgg caggagcctt
      721 gccggagtca ggaagcctca gtgctccctc tgccctctag aattaactca gtgactgttt
      781 aacgcggatg ttatatattc ttctaacctt gtttcccttc tccatgttaa taaagagcgg
      841 actgtgatat agtccattta ccctacaagt gtgcacattc aggagggaaa ttctttgctc
      901 cctttccctt cagaggggct ggatgtagtc atccttggtt ggactagaaa gagctcaaac
      961 cagtttacat tcctgtttga attttccaaa gtagaaccca ctttgacccc attaagaggc
     1021 aagcctagca catttgtccc tgggtcttca gaaagtcatt ggtgaatggc cgtagggaat
     1081 ccaggattca ctgggacagg ggaggagaag ccgggagggg tgggtcggat ttgctagctg
     1141 tagtgtgaca cactgcagtg cttgccagga aaggggaacc agtcatgcca gaaacattga
     1201 cttctgggag gccacccagg cctctctttc ctccctgctg tttggaggca agatctcctc
     1261 tttttacagg gggtccatct ttttttctta caagttcttc aataaagaca cattcttgag
     1321 tgaaatccca atca
//
LOCUS       XM_032607700            3966 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X1, mRNA.
ACCESSION   XM_032607700
VERSION     XM_032607700.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3966
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 13 long SRA reads, 18
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             311..2101
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463591.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    872..1825
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(881..883,935..937,947..949,965..970,1007..1012,
                     1070..1072,1082..1084,1100..1105,1148..1153,1205..1207,
                     1220..1222,1238..1243,1289..1291,1352..1354,1364..1366,
                     1382..1387,1442..1447,1517..1519,1529..1531,1547..1552,
                     1595..1600,1658..1660,1673..1675,1691..1696,1730..1735,
                     1790..1792,1802..1804,1820..1825)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    899..1009
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1025..1150
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1163..1288
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1310..1456
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1475..1594
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1616..1729
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1748..1822
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gcagagagcg gaggcggtgg tggtggcggc cgctggccag tgtaagatgg cggcggcggt
       61 ggtggcggca gtggacgggg cggctgggcg tggaagagtc ggagcagcct ctggcagaag
      121 gatgacccaa gacaggaagc aggctgctga gcctcgccgg ctcccgtgct tgtaactgcc
      181 ccagccggac acccccccct tgacctaccc gtccttcagt gaatctacag acctattttc
      241 tcaggagctc agcctggccc tacttcagtg ataaaggagg aaaggctggc tgcagtaaac
      301 atcattcaag atgtccagca aagggagcag cacagatggc aaaacagact tagctaatgg
      361 aagcctgtct agcagtccag aggagatgtc tggtgctgag gaggggaggg agacatcctc
      421 aggcattgaa gtggaggcct cagacctgag cttgagcttg accggggatg atggtggccc
      481 caaccgcacc agcacagaaa gtcgaggcac agatacagag agctcaggtg aagacaagga
      541 ctctgacagc atggaggaca ctggccatta ctccatcaat gatgaaaacc aagtccatga
      601 ccgctcagag gaagaagagg atgaagaaga ggaggaagaa gagcatcctc gtcgtcgtgt
      661 acagcgcaag cgggcaaacc gtgaccagga ctcatcagat gatgagcggg ccctggagga
      721 ctgggtgtcc tcggagacct cagtcctgcc ccgacctcgc tggcaagccc ttcctgccct
      781 tcgggagcgg gagctgggtt caagtgcccg ctttgtgtat gaggcttgtg gggcaagagt
      841 ctttgtgcag cgtttccgcc tgcagcatgg gcttgagggc catactggtt gtgttaatac
      901 cttgcacttt aaccagcgcg gcacctggct ggccagtggc agcgatgacc tgaaagtggt
      961 ggtttgggac tgggtacggc gacagccagt gttggacttt gagagcggcc acaaaagcaa
     1021 tgtcttccag gccaagttcc ttcctaacag tggcgattcc accctggcca tgtgtgcccg
     1081 tgatgggcag gttcgggtag cagagttgtc tgctacacag tgctgcaaga atacaaagcg
     1141 tgtggcccag cacaagggag catcccacaa gttggccctg gaaccagact ctccctgtac
     1201 gttcctatct gcaggtgaag atgcagttgt cttcaccatt gacctcagac aagaccggcc
     1261 agcttcgaaa ctggtggtga caaaagaaaa ggagaagaag gtggggctgt atacaatcta
     1321 tgtgaatcct gccaataccc accagtttgc agtgggtgga cgagatcagt ttgtaaggat
     1381 ttatgaccag aggaaaattg atgagaatga aaacaatgga gtactcaaga aattctgccc
     1441 tcatcacctg gtgaacagtg agtccaaagc aaacatcacc tgtcttgtgt acagccacga
     1501 cggcacagag ctcctggcca gttacaatga tgaagacatt tacctcttca actcctctca
     1561 cagtgatggg gcccagtata ttaagagata taagggccac agaaataacg ccacagtaaa
     1621 aggcgtcaat ttctatggcc ccaagagtga gtttgtggtg agcggtagtg actgcgggca
     1681 catcttcctc tgggagaaat catcctgcca gatcattcag ttcatggagg gggacaaggg
     1741 aggcgtggta aactgtcttg agccccaccc tcatctgcct gtgctggcaa ccagtggcct
     1801 agaccatgat gtcaagatct gggcacccac agctgaaact tccactgaac ttacagggtt
     1861 aaaggatgtg attaagaaga acaagcggga acgggatgaa gatagcttac accacaccga
     1921 cctatttgat agccacatgc tctggttcct catgcatcac ctgagacaaa gacgccatca
     1981 ccggcgctgg cgagaacctg gggttggggc cacagacgca gactcggatg agtctcccag
     2041 ctcctcagat acatcggacg aggaggaggg ccctgaccgg gtgcagtgca tgccatcctg
     2101 aggcctcgta cccaggaggg gcaggctggg gctgccaacc cgatcctgcc tgggcagccc
     2161 tttcctgtcc cgggctctaa cattcagcag aaacgcactt tggacttttt tgctttagat
     2221 ttaaaaagaa aagaaaagaa aaaaaaaaag acatcccagg aggacaagcc agaggggagc
     2281 aaacctacag agcatctaga agtgggaatt gagccctgga atggggttcc atggagaggt
     2341 gcataggact tggcagaaat ggcctctccc caaagccttt ttttttgggg gaggggggag
     2401 cctattttgt taactggttt ggggtaggga atggggtttc cttttctttg atctcccttg
     2461 tttcttggtg gggggtgggg ggataactgg ctgttcagta ccaaggggcc agactggggt
     2521 ggtagaaatg ccactctctc tttggtttag gtttttgact ttattttctt tattttttaa
     2581 aattctatga cagttgcatt gttttttctt ccccctgagc aaccaacccc atcccaggat
     2641 cctgtttttc tggggagtcc ttagagcccc taaccatccc acactcttca ctttcttttc
     2701 caccccattc attctctgta cttatcacag tgttttgcac ttgattatgt atccttcact
     2761 ctcttctctt catcccatca ccccctcagt aggtctggtg agggaggttg gggggaggtg
     2821 ggaggaggga cagaagtgga agaataggaa ggtggttacc tcttctgtta cttaaaaaaa
     2881 aaaagttgtt tggtggcagc aatctccctg tccctatcac tgttagaggc ctaattttat
     2941 atctataaat atattaaaaa gcaagtcaaa attggatgta tcatgttaaa attattgttg
     3001 aagtttaaat acctatatat tctctatgac tgcaataaag ggacttacag gagagagtga
     3061 gtgagagtaa tgatgtagag gtatcacctg gggtcagcct atcctctatg cacggctact
     3121 ggagattagg gcttaaccct tatgttttag gaggctcaag aatggaagga tcctgaattc
     3181 tgcccttcct gctttcctac catggttcag cgttgggaag cccctttcat ctctttgctc
     3241 cagatatcct acctctgctt aagtcttgtg ggggttccca ggatggctct gctaaccaga
     3301 gactggctca tcttcaaaac ttgactgaac tgtgacttca ggaagggttc tgccactgca
     3361 gaccgtctct cctaatactg tgtgtgacag aagacacact cactcttacc tttagctgct
     3421 tgattcttta aactatccaa ctcccacacc aactcccttc ctaatggaag agtataggga
     3481 aagacctcct ggtttgactt tataccttgt ccaccttctc ctgtcttggg attgaaggac
     3541 aagtcattaa tctaaggatt gagtaaggtg gctggggctc agacacctat tgtatcactg
     3601 gtcactaatt atcaaagtcc cagttgcatt cttgccctta aatgcttttg ttgctatttt
     3661 ctttgcccca accaggaatt ctgcttcctg ggacagtcag attctactag aacaggccag
     3721 gaaggaaggg aggagtgaaa gggtggaatt cccagatact ccttcctcct gccccttttc
     3781 ctagcagctc tcagaccaga tgttagctgc tgtacttcct ccctgaggta gtgaatgtgt
     3841 ggtgactgtg agtggtctgt gttcttatcg ctggtggggt gatggagtgg gctgaaacca
     3901 tgcactctgg aatttgttgt gtattttctc tcagtaaagc gttttttttt ttttcccccc
     3961 ccctga
//
LOCUS       XM_032607711            3911 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X2, mRNA.
ACCESSION   XM_032607711
VERSION     XM_032607711.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3911
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3911
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 12 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             256..2046
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463602.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    817..1770
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(826..828,880..882,892..894,910..915,952..957,
                     1015..1017,1027..1029,1045..1050,1093..1098,1150..1152,
                     1165..1167,1183..1188,1234..1236,1297..1299,1309..1311,
                     1327..1332,1387..1392,1462..1464,1474..1476,1492..1497,
                     1540..1545,1603..1605,1618..1620,1636..1641,1675..1680,
                     1735..1737,1747..1749,1765..1770)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    844..954
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    970..1095
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1108..1233
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1255..1401
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1420..1539
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1561..1674
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1693..1767
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 tgcgtccttc gaggagggtt gggagcggag agctcgcgcg accgctcgct cccccagtct
       61 tctccagcac atcgtcgcaa acggggccgg aaagcgtggc ggcgcaggcg caagcgcaga
      121 gagcggaggc ggtggtggtg gcggccgctg gccagttcct tcagtgaatc tacagaccta
      181 ttttctcagg agctcagcct ggccctactt cagtgataaa ggaggaaagg ctggctgcag
      241 taaacatcat tcaagatgtc cagcaaaggg agcagcacag atggcaaaac agacttagct
      301 aatggaagcc tgtctagcag tccagaggag atgtctggtg ctgaggaggg gagggagaca
      361 tcctcaggca ttgaagtgga ggcctcagac ctgagcttga gcttgaccgg ggatgatggt
      421 ggccccaacc gcaccagcac agaaagtcga ggcacagata cagagagctc aggtgaagac
      481 aaggactctg acagcatgga ggacactggc cattactcca tcaatgatga aaaccaagtc
      541 catgaccgct cagaggaaga agaggatgaa gaagaggagg aagaagagca tcctcgtcgt
      601 cgtgtacagc gcaagcgggc aaaccgtgac caggactcat cagatgatga gcgggccctg
      661 gaggactggg tgtcctcgga gacctcagtc ctgccccgac ctcgctggca agcccttcct
      721 gcccttcggg agcgggagct gggttcaagt gcccgctttg tgtatgaggc ttgtggggca
      781 agagtctttg tgcagcgttt ccgcctgcag catgggcttg agggccatac tggttgtgtt
      841 aataccttgc actttaacca gcgcggcacc tggctggcca gtggcagcga tgacctgaaa
      901 gtggtggttt gggactgggt acggcgacag ccagtgttgg actttgagag cggccacaaa
      961 agcaatgtct tccaggccaa gttccttcct aacagtggcg attccaccct ggccatgtgt
     1021 gcccgtgatg ggcaggttcg ggtagcagag ttgtctgcta cacagtgctg caagaataca
     1081 aagcgtgtgg cccagcacaa gggagcatcc cacaagttgg ccctggaacc agactctccc
     1141 tgtacgttcc tatctgcagg tgaagatgca gttgtcttca ccattgacct cagacaagac
     1201 cggccagctt cgaaactggt ggtgacaaaa gaaaaggaga agaaggtggg gctgtataca
     1261 atctatgtga atcctgccaa tacccaccag tttgcagtgg gtggacgaga tcagtttgta
     1321 aggatttatg accagaggaa aattgatgag aatgaaaaca atggagtact caagaaattc
     1381 tgccctcatc acctggtgaa cagtgagtcc aaagcaaaca tcacctgtct tgtgtacagc
     1441 cacgacggca cagagctcct ggccagttac aatgatgaag acatttacct cttcaactcc
     1501 tctcacagtg atggggccca gtatattaag agatataagg gccacagaaa taacgccaca
     1561 gtaaaaggcg tcaatttcta tggccccaag agtgagtttg tggtgagcgg tagtgactgc
     1621 gggcacatct tcctctggga gaaatcatcc tgccagatca ttcagttcat ggagggggac
     1681 aagggaggcg tggtaaactg tcttgagccc caccctcatc tgcctgtgct ggcaaccagt
     1741 ggcctagacc atgatgtcaa gatctgggca cccacagctg aaacttccac tgaacttaca
     1801 gggttaaagg atgtgattaa gaagaacaag cgggaacggg atgaagatag cttacaccac
     1861 accgacctat ttgatagcca catgctctgg ttcctcatgc atcacctgag acaaagacgc
     1921 catcaccggc gctggcgaga acctggggtt ggggccacag acgcagactc ggatgagtct
     1981 cccagctcct cagatacatc ggacgaggag gagggccctg accgggtgca gtgcatgcca
     2041 tcctgaggcc tcgtacccag gaggggcagg ctggggctgc caacccgatc ctgcctgggc
     2101 agccctttcc tgtcccgggc tctaacattc agcagaaacg cactttggac ttttttgctt
     2161 tagatttaaa aagaaaagaa aagaaaaaaa aaaagacatc ccaggaggac aagccagagg
     2221 ggagcaaacc tacagagcat ctagaagtgg gaattgagcc ctggaatggg gttccatgga
     2281 gaggtgcata ggacttggca gaaatggcct ctccccaaag cctttttttt tgggggaggg
     2341 gggagcctat tttgttaact ggtttggggt agggaatggg gtttcctttt ctttgatctc
     2401 ccttgtttct tggtgggggg tggggggata actggctgtt cagtaccaag gggccagact
     2461 ggggtggtag aaatgccact ctctctttgg tttaggtttt tgactttatt ttctttattt
     2521 tttaaaattc tatgacagtt gcattgtttt ttcttccccc tgagcaacca accccatccc
     2581 aggatcctgt ttttctgggg agtccttaga gcccctaacc atcccacact cttcactttc
     2641 ttttccaccc cattcattct ctgtacttat cacagtgttt tgcacttgat tatgtatcct
     2701 tcactctctt ctcttcatcc catcaccccc tcagtaggtc tggtgaggga ggttgggggg
     2761 aggtgggagg agggacagaa gtggaagaat aggaaggtgg ttacctcttc tgttacttaa
     2821 aaaaaaaaag ttgtttggtg gcagcaatct ccctgtccct atcactgtta gaggcctaat
     2881 tttatatcta taaatatatt aaaaagcaag tcaaaattgg atgtatcatg ttaaaattat
     2941 tgttgaagtt taaataccta tatattctct atgactgcaa taaagggact tacaggagag
     3001 agtgagtgag agtaatgatg tagaggtatc acctggggtc agcctatcct ctatgcacgg
     3061 ctactggaga ttagggctta acccttatgt tttaggaggc tcaagaatgg aaggatcctg
     3121 aattctgccc ttcctgcttt cctaccatgg ttcagcgttg ggaagcccct ttcatctctt
     3181 tgctccagat atcctacctc tgcttaagtc ttgtgggggt tcccaggatg gctctgctaa
     3241 ccagagactg gctcatcttc aaaacttgac tgaactgtga cttcaggaag ggttctgcca
     3301 ctgcagaccg tctctcctaa tactgtgtgt gacagaagac acactcactc ttacctttag
     3361 ctgcttgatt ctttaaacta tccaactccc acaccaactc ccttcctaat ggaagagtat
     3421 agggaaagac ctcctggttt gactttatac cttgtccacc ttctcctgtc ttgggattga
     3481 aggacaagtc attaatctaa ggattgagta aggtggctgg ggctcagaca cctattgtat
     3541 cactggtcac taattatcaa agtcccagtt gcattcttgc ccttaaatgc ttttgttgct
     3601 attttctttg ccccaaccag gaattctgct tcctgggaca gtcagattct actagaacag
     3661 gccaggaagg aagggaggag tgaaagggtg gaattcccag atactccttc ctcctgcccc
     3721 ttttcctagc agctctcaga ccagatgtta gctgctgtac ttcctccctg aggtagtgaa
     3781 tgtgtggtga ctgtgagtgg tctgtgttct tatcgctggt ggggtgatgg agtgggctga
     3841 aaccatgcac tctggaattt gttgtgtatt ttctctcagt aaagcgtttt tttttttttc
     3901 cccccccctg a
//
LOCUS       XM_032607721            4155 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X3, mRNA.
ACCESSION   XM_032607721
VERSION     XM_032607721.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4155
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4155
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 11 long SRA reads, 18
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116741379"
     CDS             500..2290
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463612.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    1061..2014
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(1070..1072,1124..1126,1136..1138,1154..1159,
                     1196..1201,1259..1261,1271..1273,1289..1294,1337..1342,
                     1394..1396,1409..1411,1427..1432,1478..1480,1541..1543,
                     1553..1555,1571..1576,1631..1636,1706..1708,1718..1720,
                     1736..1741,1784..1789,1847..1849,1862..1864,1880..1885,
                     1919..1924,1979..1981,1991..1993,2009..2014)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    1088..1198
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1214..1339
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1352..1477
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1499..1645
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1664..1783
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1805..1918
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1937..2011
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 agtgtaagat ggcggcggcg gtggtggcgg cagtggacgg ggcggctggg cgtggaagag
       61 tcggagcagc ctctggcaga aggatgaccc aagacaggaa gcaggctgct gagcctcgcc
      121 ggctcccgtg cttgtaactg ccccagccgg acaccccccc cttgacctac ccggtccgtg
      181 tctcgttccg gcttggcctg cccccctctc ccctggccca ctcctcttca agataggttt
      241 gactcctttc ccaagctccc agggctcagg gcttcttccc ctgacctgag tcaccgccgg
      301 gaggattgac tgccttccct caggtcagcc ccagggttga cctcaggagc ctgccctgca
      361 atctacaggg acgtcttgct tcgtcgggtg acccatttgt tccttcagtg aatctacaga
      421 cctattttct caggagctca gcctggccct acttcagtga taaaggagga aaggctggct
      481 gcagtaaaca tcattcaaga tgtccagcaa agggagcagc acagatggca aaacagactt
      541 agctaatgga agcctgtcta gcagtccaga ggagatgtct ggtgctgagg aggggaggga
      601 gacatcctca ggcattgaag tggaggcctc agacctgagc ttgagcttga ccggggatga
      661 tggtggcccc aaccgcacca gcacagaaag tcgaggcaca gatacagaga gctcaggtga
      721 agacaaggac tctgacagca tggaggacac tggccattac tccatcaatg atgaaaacca
      781 agtccatgac cgctcagagg aagaagagga tgaagaagag gaggaagaag agcatcctcg
      841 tcgtcgtgta cagcgcaagc gggcaaaccg tgaccaggac tcatcagatg atgagcgggc
      901 cctggaggac tgggtgtcct cggagacctc agtcctgccc cgacctcgct ggcaagccct
      961 tcctgccctt cgggagcggg agctgggttc aagtgcccgc tttgtgtatg aggcttgtgg
     1021 ggcaagagtc tttgtgcagc gtttccgcct gcagcatggg cttgagggcc atactggttg
     1081 tgttaatacc ttgcacttta accagcgcgg cacctggctg gccagtggca gcgatgacct
     1141 gaaagtggtg gtttgggact gggtacggcg acagccagtg ttggactttg agagcggcca
     1201 caaaagcaat gtcttccagg ccaagttcct tcctaacagt ggcgattcca ccctggccat
     1261 gtgtgcccgt gatgggcagg ttcgggtagc agagttgtct gctacacagt gctgcaagaa
     1321 tacaaagcgt gtggcccagc acaagggagc atcccacaag ttggccctgg aaccagactc
     1381 tccctgtacg ttcctatctg caggtgaaga tgcagttgtc ttcaccattg acctcagaca
     1441 agaccggcca gcttcgaaac tggtggtgac aaaagaaaag gagaagaagg tggggctgta
     1501 tacaatctat gtgaatcctg ccaataccca ccagtttgca gtgggtggac gagatcagtt
     1561 tgtaaggatt tatgaccaga ggaaaattga tgagaatgaa aacaatggag tactcaagaa
     1621 attctgccct catcacctgg tgaacagtga gtccaaagca aacatcacct gtcttgtgta
     1681 cagccacgac ggcacagagc tcctggccag ttacaatgat gaagacattt acctcttcaa
     1741 ctcctctcac agtgatgggg cccagtatat taagagatat aagggccaca gaaataacgc
     1801 cacagtaaaa ggcgtcaatt tctatggccc caagagtgag tttgtggtga gcggtagtga
     1861 ctgcgggcac atcttcctct gggagaaatc atcctgccag atcattcagt tcatggaggg
     1921 ggacaaggga ggcgtggtaa actgtcttga gccccaccct catctgcctg tgctggcaac
     1981 cagtggccta gaccatgatg tcaagatctg ggcacccaca gctgaaactt ccactgaact
     2041 tacagggtta aaggatgtga ttaagaagaa caagcgggaa cgggatgaag atagcttaca
     2101 ccacaccgac ctatttgata gccacatgct ctggttcctc atgcatcacc tgagacaaag
     2161 acgccatcac cggcgctggc gagaacctgg ggttggggcc acagacgcag actcggatga
     2221 gtctcccagc tcctcagata catcggacga ggaggagggc cctgaccggg tgcagtgcat
     2281 gccatcctga ggcctcgtac ccaggagggg caggctgggg ctgccaaccc gatcctgcct
     2341 gggcagccct ttcctgtccc gggctctaac attcagcaga aacgcacttt ggactttttt
     2401 gctttagatt taaaaagaaa agaaaagaaa aaaaaaaaga catcccagga ggacaagcca
     2461 gaggggagca aacctacaga gcatctagaa gtgggaattg agccctggaa tggggttcca
     2521 tggagaggtg cataggactt ggcagaaatg gcctctcccc aaagcctttt tttttggggg
     2581 aggggggagc ctattttgtt aactggtttg gggtagggaa tggggtttcc ttttctttga
     2641 tctcccttgt ttcttggtgg ggggtggggg gataactggc tgttcagtac caaggggcca
     2701 gactggggtg gtagaaatgc cactctctct ttggtttagg tttttgactt tattttcttt
     2761 attttttaaa attctatgac agttgcattg ttttttcttc cccctgagca accaacccca
     2821 tcccaggatc ctgtttttct ggggagtcct tagagcccct aaccatccca cactcttcac
     2881 tttcttttcc accccattca ttctctgtac ttatcacagt gttttgcact tgattatgta
     2941 tccttcactc tcttctcttc atcccatcac cccctcagta ggtctggtga gggaggttgg
     3001 ggggaggtgg gaggagggac agaagtggaa gaataggaag gtggttacct cttctgttac
     3061 ttaaaaaaaa aaagttgttt ggtggcagca atctccctgt ccctatcact gttagaggcc
     3121 taattttata tctataaata tattaaaaag caagtcaaaa ttggatgtat catgttaaaa
     3181 ttattgttga agtttaaata cctatatatt ctctatgact gcaataaagg gacttacagg
     3241 agagagtgag tgagagtaat gatgtagagg tatcacctgg ggtcagccta tcctctatgc
     3301 acggctactg gagattaggg cttaaccctt atgttttagg aggctcaaga atggaaggat
     3361 cctgaattct gcccttcctg ctttcctacc atggttcagc gttgggaagc ccctttcatc
     3421 tctttgctcc agatatccta cctctgctta agtcttgtgg gggttcccag gatggctctg
     3481 ctaaccagag actggctcat cttcaaaact tgactgaact gtgacttcag gaagggttct
     3541 gccactgcag accgtctctc ctaatactgt gtgtgacaga agacacactc actcttacct
     3601 ttagctgctt gattctttaa actatccaac tcccacacca actcccttcc taatggaaga
     3661 gtatagggaa agacctcctg gtttgacttt ataccttgtc caccttctcc tgtcttggga
     3721 ttgaaggaca agtcattaat ctaaggattg agtaaggtgg ctggggctca gacacctatt
     3781 gtatcactgg tcactaatta tcaaagtccc agttgcattc ttgcccttaa atgcttttgt
     3841 tgctattttc tttgccccaa ccaggaattc tgcttcctgg gacagtcaga ttctactaga
     3901 acaggccagg aaggaaggga ggagtgaaag ggtggaattc ccagatactc cttcctcctg
     3961 ccccttttcc tagcagctct cagaccagat gttagctgct gtacttcctc cctgaggtag
     4021 tgaatgtgtg gtgactgtga gtggtctgtg ttcttatcgc tggtggggtg atggagtggg
     4081 ctgaaaccat gcactctgga atttgttgtg tattttctct cagtaaagcg tttttttttt
     4141 tttccccccc cctga
//
LOCUS       XM_032607732            3871 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X4, mRNA.
ACCESSION   XM_032607732
VERSION     XM_032607732.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3871
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3871
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 10 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             216..2006
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463623.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    777..1730
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(786..788,840..842,852..854,870..875,912..917,
                     975..977,987..989,1005..1010,1053..1058,1110..1112,
                     1125..1127,1143..1148,1194..1196,1257..1259,1269..1271,
                     1287..1292,1347..1352,1422..1424,1434..1436,1452..1457,
                     1500..1505,1563..1565,1578..1580,1596..1601,1635..1640,
                     1695..1697,1707..1709,1725..1730)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    804..914
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    930..1055
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1068..1193
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1215..1361
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1380..1499
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1521..1634
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1653..1727
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ctcccctggc ccactcctct tcaagatagg tttgactcct ttcccaagct cccagggctc
       61 agggcttctt cccctgacct gagtcaccgc cgggaggatt gactgccttc cctcagtcct
      121 tcagtgaatc tacagaccta ttttctcagg agctcagcct ggccctactt cagtgataaa
      181 ggaggaaagg ctggctgcag taaacatcat tcaagatgtc cagcaaaggg agcagcacag
      241 atggcaaaac agacttagct aatggaagcc tgtctagcag tccagaggag atgtctggtg
      301 ctgaggaggg gagggagaca tcctcaggca ttgaagtgga ggcctcagac ctgagcttga
      361 gcttgaccgg ggatgatggt ggccccaacc gcaccagcac agaaagtcga ggcacagata
      421 cagagagctc aggtgaagac aaggactctg acagcatgga ggacactggc cattactcca
      481 tcaatgatga aaaccaagtc catgaccgct cagaggaaga agaggatgaa gaagaggagg
      541 aagaagagca tcctcgtcgt cgtgtacagc gcaagcgggc aaaccgtgac caggactcat
      601 cagatgatga gcgggccctg gaggactggg tgtcctcgga gacctcagtc ctgccccgac
      661 ctcgctggca agcccttcct gcccttcggg agcgggagct gggttcaagt gcccgctttg
      721 tgtatgaggc ttgtggggca agagtctttg tgcagcgttt ccgcctgcag catgggcttg
      781 agggccatac tggttgtgtt aataccttgc actttaacca gcgcggcacc tggctggcca
      841 gtggcagcga tgacctgaaa gtggtggttt gggactgggt acggcgacag ccagtgttgg
      901 actttgagag cggccacaaa agcaatgtct tccaggccaa gttccttcct aacagtggcg
      961 attccaccct ggccatgtgt gcccgtgatg ggcaggttcg ggtagcagag ttgtctgcta
     1021 cacagtgctg caagaataca aagcgtgtgg cccagcacaa gggagcatcc cacaagttgg
     1081 ccctggaacc agactctccc tgtacgttcc tatctgcagg tgaagatgca gttgtcttca
     1141 ccattgacct cagacaagac cggccagctt cgaaactggt ggtgacaaaa gaaaaggaga
     1201 agaaggtggg gctgtataca atctatgtga atcctgccaa tacccaccag tttgcagtgg
     1261 gtggacgaga tcagtttgta aggatttatg accagaggaa aattgatgag aatgaaaaca
     1321 atggagtact caagaaattc tgccctcatc acctggtgaa cagtgagtcc aaagcaaaca
     1381 tcacctgtct tgtgtacagc cacgacggca cagagctcct ggccagttac aatgatgaag
     1441 acatttacct cttcaactcc tctcacagtg atggggccca gtatattaag agatataagg
     1501 gccacagaaa taacgccaca gtaaaaggcg tcaatttcta tggccccaag agtgagtttg
     1561 tggtgagcgg tagtgactgc gggcacatct tcctctggga gaaatcatcc tgccagatca
     1621 ttcagttcat ggagggggac aagggaggcg tggtaaactg tcttgagccc caccctcatc
     1681 tgcctgtgct ggcaaccagt ggcctagacc atgatgtcaa gatctgggca cccacagctg
     1741 aaacttccac tgaacttaca gggttaaagg atgtgattaa gaagaacaag cgggaacggg
     1801 atgaagatag cttacaccac accgacctat ttgatagcca catgctctgg ttcctcatgc
     1861 atcacctgag acaaagacgc catcaccggc gctggcgaga acctggggtt ggggccacag
     1921 acgcagactc ggatgagtct cccagctcct cagatacatc ggacgaggag gagggccctg
     1981 accgggtgca gtgcatgcca tcctgaggcc tcgtacccag gaggggcagg ctggggctgc
     2041 caacccgatc ctgcctgggc agccctttcc tgtcccgggc tctaacattc agcagaaacg
     2101 cactttggac ttttttgctt tagatttaaa aagaaaagaa aagaaaaaaa aaaagacatc
     2161 ccaggaggac aagccagagg ggagcaaacc tacagagcat ctagaagtgg gaattgagcc
     2221 ctggaatggg gttccatgga gaggtgcata ggacttggca gaaatggcct ctccccaaag
     2281 cctttttttt tgggggaggg gggagcctat tttgttaact ggtttggggt agggaatggg
     2341 gtttcctttt ctttgatctc ccttgtttct tggtgggggg tggggggata actggctgtt
     2401 cagtaccaag gggccagact ggggtggtag aaatgccact ctctctttgg tttaggtttt
     2461 tgactttatt ttctttattt tttaaaattc tatgacagtt gcattgtttt ttcttccccc
     2521 tgagcaacca accccatccc aggatcctgt ttttctgggg agtccttaga gcccctaacc
     2581 atcccacact cttcactttc ttttccaccc cattcattct ctgtacttat cacagtgttt
     2641 tgcacttgat tatgtatcct tcactctctt ctcttcatcc catcaccccc tcagtaggtc
     2701 tggtgaggga ggttgggggg aggtgggagg agggacagaa gtggaagaat aggaaggtgg
     2761 ttacctcttc tgttacttaa aaaaaaaaag ttgtttggtg gcagcaatct ccctgtccct
     2821 atcactgtta gaggcctaat tttatatcta taaatatatt aaaaagcaag tcaaaattgg
     2881 atgtatcatg ttaaaattat tgttgaagtt taaataccta tatattctct atgactgcaa
     2941 taaagggact tacaggagag agtgagtgag agtaatgatg tagaggtatc acctggggtc
     3001 agcctatcct ctatgcacgg ctactggaga ttagggctta acccttatgt tttaggaggc
     3061 tcaagaatgg aaggatcctg aattctgccc ttcctgcttt cctaccatgg ttcagcgttg
     3121 ggaagcccct ttcatctctt tgctccagat atcctacctc tgcttaagtc ttgtgggggt
     3181 tcccaggatg gctctgctaa ccagagactg gctcatcttc aaaacttgac tgaactgtga
     3241 cttcaggaag ggttctgcca ctgcagaccg tctctcctaa tactgtgtgt gacagaagac
     3301 acactcactc ttacctttag ctgcttgatt ctttaaacta tccaactccc acaccaactc
     3361 ccttcctaat ggaagagtat agggaaagac ctcctggttt gactttatac cttgtccacc
     3421 ttctcctgtc ttgggattga aggacaagtc attaatctaa ggattgagta aggtggctgg
     3481 ggctcagaca cctattgtat cactggtcac taattatcaa agtcccagtt gcattcttgc
     3541 ccttaaatgc ttttgttgct attttctttg ccccaaccag gaattctgct tcctgggaca
     3601 gtcagattct actagaacag gccaggaagg aagggaggag tgaaagggtg gaattcccag
     3661 atactccttc ctcctgcccc ttttcctagc agctctcaga ccagatgtta gctgctgtac
     3721 ttcctccctg aggtagtgaa tgtgtggtga ctgtgagtgg tctgtgttct tatcgctggt
     3781 ggggtgatgg agtgggctga aaccatgcac tctggaattt gttgtgtatt ttctctcagt
     3841 aaagcgtttt tttttttttc cccccccctg a
//
LOCUS       XM_032607741            3166 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X5, mRNA.
ACCESSION   XM_032607741
VERSION     XM_032607741.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3166
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3166
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             423..2213
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463632.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    984..1937
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(993..995,1047..1049,1059..1061,1077..1082,
                     1119..1124,1182..1184,1194..1196,1212..1217,1260..1265,
                     1317..1319,1332..1334,1350..1355,1401..1403,1464..1466,
                     1476..1478,1494..1499,1554..1559,1629..1631,1641..1643,
                     1659..1664,1707..1712,1770..1772,1785..1787,1803..1808,
                     1842..1847,1902..1904,1914..1916,1932..1937)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    1011..1121
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1137..1262
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1275..1400
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1422..1568
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1587..1706
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1728..1841
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1860..1934
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 cagtgtaaga tggcggcggc ggtggtggcg gcagtggacg gggcggctgg gcgtggaaga
       61 gtcggagcag cctctggcag aaggatgacc caagacagga agcaggctgc tgagcctcgc
      121 cggctcccgt gcttgtaact gccccagccg gacacccccc ccttgaccta cccgtccttc
      181 agtgaatcta cagacctatt ttctcaggag ctcagcctgg ccctacttca gtgataaagg
      241 aggaaaggaa taaattctgt gaactttttt cctcaaagaa aagatcgctt cttgcaagaa
      301 ccttaaacca gtgtcccaga agatgagctt tacaacctct gggtataggt tcaacctcat
      361 ggctctcctt ttctgagaag tggttctcag agctaggctg gctgcagtaa acatcattca
      421 agatgtccag caaagggagc agcacagatg gcaaaacaga cttagctaat ggaagcctgt
      481 ctagcagtcc agaggagatg tctggtgctg aggaggggag ggagacatcc tcaggcattg
      541 aagtggaggc ctcagacctg agcttgagct tgaccgggga tgatggtggc cccaaccgca
      601 ccagcacaga aagtcgaggc acagatacag agagctcagg tgaagacaag gactctgaca
      661 gcatggagga cactggccat tactccatca atgatgaaaa ccaagtccat gaccgctcag
      721 aggaagaaga ggatgaagaa gaggaggaag aagagcatcc tcgtcgtcgt gtacagcgca
      781 agcgggcaaa ccgtgaccag gactcatcag atgatgagcg ggccctggag gactgggtgt
      841 cctcggagac ctcagtcctg ccccgacctc gctggcaagc ccttcctgcc cttcgggagc
      901 gggagctggg ttcaagtgcc cgctttgtgt atgaggcttg tggggcaaga gtctttgtgc
      961 agcgtttccg cctgcagcat gggcttgagg gccatactgg ttgtgttaat accttgcact
     1021 ttaaccagcg cggcacctgg ctggccagtg gcagcgatga cctgaaagtg gtggtttggg
     1081 actgggtacg gcgacagcca gtgttggact ttgagagcgg ccacaaaagc aatgtcttcc
     1141 aggccaagtt ccttcctaac agtggcgatt ccaccctggc catgtgtgcc cgtgatgggc
     1201 aggttcgggt agcagagttg tctgctacac agtgctgcaa gaatacaaag cgtgtggccc
     1261 agcacaaggg agcatcccac aagttggccc tggaaccaga ctctccctgt acgttcctat
     1321 ctgcaggtga agatgcagtt gtcttcacca ttgacctcag acaagaccgg ccagcttcga
     1381 aactggtggt gacaaaagaa aaggagaaga aggtggggct gtatacaatc tatgtgaatc
     1441 ctgccaatac ccaccagttt gcagtgggtg gacgagatca gtttgtaagg atttatgacc
     1501 agaggaaaat tgatgagaat gaaaacaatg gagtactcaa gaaattctgc cctcatcacc
     1561 tggtgaacag tgagtccaaa gcaaacatca cctgtcttgt gtacagccac gacggcacag
     1621 agctcctggc cagttacaat gatgaagaca tttacctctt caactcctct cacagtgatg
     1681 gggcccagta tattaagaga tataagggcc acagaaataa cgccacagta aaaggcgtca
     1741 atttctatgg ccccaagagt gagtttgtgg tgagcggtag tgactgcggg cacatcttcc
     1801 tctgggagaa atcatcctgc cagatcattc agttcatgga gggggacaag ggaggcgtgg
     1861 taaactgtct tgagccccac cctcatctgc ctgtgctggc aaccagtggc ctagaccatg
     1921 atgtcaagat ctgggcaccc acagctgaaa cttccactga acttacaggg ttaaaggatg
     1981 tgattaagaa gaacaagcgg gaacgggatg aagatagctt acaccacacc gacctatttg
     2041 atagccacat gctctggttc ctcatgcatc acctgagaca aagacgccat caccggcgct
     2101 ggcgagaacc tggggttggg gccacagacg cagactcgga tgagtctccc agctcctcag
     2161 atacatcgga cgaggaggag ggccctgacc gggtgcagtg catgccatcc tgaggcctcg
     2221 tacccaggag gggcaggctg gggctgccaa cccgatcctg cctgggcagc cctttcctgt
     2281 cccgggctct aacattcagc agaaacgcac tttggacttt tttgctttag atttaaaaag
     2341 aaaagaaaag aaaaaaaaaa agacatccca ggaggacaag ccagagggga gcaaacctac
     2401 agagcatcta gaagtgggaa ttgagccctg gaatggggtt ccatggagag gtgcatagga
     2461 cttggcagaa atggcctctc cccaaagcct ttttttttgg gggagggggg agcctatttt
     2521 gttaactggt ttggggtagg gaatggggtt tccttttctt tgatctccct tgtttcttgg
     2581 tggggggtgg ggggataact ggctgttcag taccaagggg ccagactggg gtggtagaaa
     2641 tgccactctc tctttggttt aggtttttga ctttattttc tttatttttt aaaattctat
     2701 gacagttgca ttgttttttc ttccccctga gcaaccaacc ccatcccagg atcctgtttt
     2761 tctggggagt ccttagagcc cctaaccatc ccacactctt cactttcttt tccaccccat
     2821 tcattctctg tacttatcac agtgttttgc acttgattat gtatccttca ctctcttctc
     2881 ttcatcccat caccccctca gtaggtctgg tgagggaggt tggggggagg tgggaggagg
     2941 gacagaagtg gaagaatagg aaggtggtta cctcttctgt tacttaaaaa aaaaaagttg
     3001 tttggtggca gcaatctccc tgtccctatc actgttagag gcctaatttt atatctataa
     3061 atatattaaa aagcaagtca aaattggatg tatcatgtta aaattattgt tgaagtttaa
     3121 atacctatat attctctatg actgcaataa agggacttac aggaga
//
LOCUS       XM_032607751            3123 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X6, mRNA.
ACCESSION   XM_032607751
VERSION     XM_032607751.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3123
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3123
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             380..2170
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463642.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    941..1894
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(950..952,1004..1006,1016..1018,1034..1039,
                     1076..1081,1139..1141,1151..1153,1169..1174,1217..1222,
                     1274..1276,1289..1291,1307..1312,1358..1360,1421..1423,
                     1433..1435,1451..1456,1511..1516,1586..1588,1598..1600,
                     1616..1621,1664..1669,1727..1729,1742..1744,1760..1765,
                     1799..1804,1859..1861,1871..1873,1889..1894)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    968..1078
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1094..1219
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1232..1357
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1379..1525
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1544..1663
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1685..1798
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1817..1891
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gcggcggcgg tggtggcggc agtggacggg gcggctgggc gtggaagagt cggagcagcc
       61 tctggcagaa ggatgaccca agacaggaag caggctgctg agcctcgccg gctcccgtgc
      121 ttgtaactgc cccagccgga cacccccccc ttgacctacc cgtccttcag tgaatctaca
      181 gacctatttt ctcaggagct cagcctggcc ctacttcagt gataaaggag gaaagaaaag
      241 atcgcttctt gcaagaacct taaaccagtg tcccagaaga tgagctttac aacctctggg
      301 tataggttca acctcatggc tctccttttc tgagaagtgg ttctcagagc taggctggct
      361 gcagtaaaca tcattcaaga tgtccagcaa agggagcagc acagatggca aaacagactt
      421 agctaatgga agcctgtcta gcagtccaga ggagatgtct ggtgctgagg aggggaggga
      481 gacatcctca ggcattgaag tggaggcctc agacctgagc ttgagcttga ccggggatga
      541 tggtggcccc aaccgcacca gcacagaaag tcgaggcaca gatacagaga gctcaggtga
      601 agacaaggac tctgacagca tggaggacac tggccattac tccatcaatg atgaaaacca
      661 agtccatgac cgctcagagg aagaagagga tgaagaagag gaggaagaag agcatcctcg
      721 tcgtcgtgta cagcgcaagc gggcaaaccg tgaccaggac tcatcagatg atgagcgggc
      781 cctggaggac tgggtgtcct cggagacctc agtcctgccc cgacctcgct ggcaagccct
      841 tcctgccctt cgggagcggg agctgggttc aagtgcccgc tttgtgtatg aggcttgtgg
      901 ggcaagagtc tttgtgcagc gtttccgcct gcagcatggg cttgagggcc atactggttg
      961 tgttaatacc ttgcacttta accagcgcgg cacctggctg gccagtggca gcgatgacct
     1021 gaaagtggtg gtttgggact gggtacggcg acagccagtg ttggactttg agagcggcca
     1081 caaaagcaat gtcttccagg ccaagttcct tcctaacagt ggcgattcca ccctggccat
     1141 gtgtgcccgt gatgggcagg ttcgggtagc agagttgtct gctacacagt gctgcaagaa
     1201 tacaaagcgt gtggcccagc acaagggagc atcccacaag ttggccctgg aaccagactc
     1261 tccctgtacg ttcctatctg caggtgaaga tgcagttgtc ttcaccattg acctcagaca
     1321 agaccggcca gcttcgaaac tggtggtgac aaaagaaaag gagaagaagg tggggctgta
     1381 tacaatctat gtgaatcctg ccaataccca ccagtttgca gtgggtggac gagatcagtt
     1441 tgtaaggatt tatgaccaga ggaaaattga tgagaatgaa aacaatggag tactcaagaa
     1501 attctgccct catcacctgg tgaacagtga gtccaaagca aacatcacct gtcttgtgta
     1561 cagccacgac ggcacagagc tcctggccag ttacaatgat gaagacattt acctcttcaa
     1621 ctcctctcac agtgatgggg cccagtatat taagagatat aagggccaca gaaataacgc
     1681 cacagtaaaa ggcgtcaatt tctatggccc caagagtgag tttgtggtga gcggtagtga
     1741 ctgcgggcac atcttcctct gggagaaatc atcctgccag atcattcagt tcatggaggg
     1801 ggacaaggga ggcgtggtaa actgtcttga gccccaccct catctgcctg tgctggcaac
     1861 cagtggccta gaccatgatg tcaagatctg ggcacccaca gctgaaactt ccactgaact
     1921 tacagggtta aaggatgtga ttaagaagaa caagcgggaa cgggatgaag atagcttaca
     1981 ccacaccgac ctatttgata gccacatgct ctggttcctc atgcatcacc tgagacaaag
     2041 acgccatcac cggcgctggc gagaacctgg ggttggggcc acagacgcag actcggatga
     2101 gtctcccagc tcctcagata catcggacga ggaggagggc cctgaccggg tgcagtgcat
     2161 gccatcctga ggcctcgtac ccaggagggg caggctgggg ctgccaaccc gatcctgcct
     2221 gggcagccct ttcctgtccc gggctctaac attcagcaga aacgcacttt ggactttttt
     2281 gctttagatt taaaaagaaa agaaaagaaa aaaaaaaaga catcccagga ggacaagcca
     2341 gaggggagca aacctacaga gcatctagaa gtgggaattg agccctggaa tggggttcca
     2401 tggagaggtg cataggactt ggcagaaatg gcctctcccc aaagcctttt tttttggggg
     2461 aggggggagc ctattttgtt aactggtttg gggtagggaa tggggtttcc ttttctttga
     2521 tctcccttgt ttcttggtgg ggggtggggg gataactggc tgttcagtac caaggggcca
     2581 gactggggtg gtagaaatgc cactctctct ttggtttagg tttttgactt tattttcttt
     2641 attttttaaa attctatgac agttgcattg ttttttcttc cccctgagca accaacccca
     2701 tcccaggatc ctgtttttct ggggagtcct tagagcccct aaccatccca cactcttcac
     2761 tttcttttcc accccattca ttctctgtac ttatcacagt gttttgcact tgattatgta
     2821 tccttcactc tcttctcttc atcccatcac cccctcagta ggtctggtga gggaggttgg
     2881 ggggaggtgg gaggagggac agaagtggaa gaataggaag gtggttacct cttctgttac
     2941 ttaaaaaaaa aaagttgttt ggtggcagca atctccctgt ccctatcact gttagaggcc
     3001 taattttata tctataaata tattaaaaag caagtcaaaa ttggatgtat catgttaaaa
     3061 ttattgttga agtttaaata cctatatatt ctctatgact gcaataaagg gacttacagg
     3121 aga
//
LOCUS       XM_032607760            3233 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X7, mRNA.
ACCESSION   XM_032607760
VERSION     XM_032607760.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3233
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3233
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 10 long SRA reads, 18
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116741379"
     CDS             490..2280
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463651.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    1051..2004
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(1060..1062,1114..1116,1126..1128,1144..1149,
                     1186..1191,1249..1251,1261..1263,1279..1284,1327..1332,
                     1384..1386,1399..1401,1417..1422,1468..1470,1531..1533,
                     1543..1545,1561..1566,1621..1626,1696..1698,1708..1710,
                     1726..1731,1774..1779,1837..1839,1852..1854,1870..1875,
                     1909..1914,1969..1971,1981..1983,1999..2004)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    1078..1188
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1204..1329
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1342..1467
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1489..1635
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1654..1773
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1795..1908
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1927..2001
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ctccagcaca tcgtcgcaaa cggggccgga aagcgtggcg gcgcaggcgc aagcgcagag
       61 agcggaggcg gtggtggtgg cggccgctgg ccagtgtaag atggcggcgg cggtggtggc
      121 ggcagtggac ggggcggctg ggcgtggaag agtcggagca gcctctggca gaaggatgac
      181 ccaagacagg aagcaggctg ctgagcctcg ccggctcccg tgcttgtaac tgccccagcc
      241 ggacaccccc cccttgacct acccgtcctt cagtgaatct acagacctat tttctcagga
      301 gctcagcctg gccctacttc agtgataaag gaggaaagtt taaaacaata ctggcatttc
      361 aaaagcaaac ggactccaat agaagacgtt ctatagaagt atgccctgtt gtgggagact
      421 gagatcttca gagtttcatg gtctaggtcc tgtattctat caggctggct gcagtaaaca
      481 tcattcaaga tgtccagcaa agggagcagc acagatggca aaacagactt agctaatgga
      541 agcctgtcta gcagtccaga ggagatgtct ggtgctgagg aggggaggga gacatcctca
      601 ggcattgaag tggaggcctc agacctgagc ttgagcttga ccggggatga tggtggcccc
      661 aaccgcacca gcacagaaag tcgaggcaca gatacagaga gctcaggtga agacaaggac
      721 tctgacagca tggaggacac tggccattac tccatcaatg atgaaaacca agtccatgac
      781 cgctcagagg aagaagagga tgaagaagag gaggaagaag agcatcctcg tcgtcgtgta
      841 cagcgcaagc gggcaaaccg tgaccaggac tcatcagatg atgagcgggc cctggaggac
      901 tgggtgtcct cggagacctc agtcctgccc cgacctcgct ggcaagccct tcctgccctt
      961 cgggagcggg agctgggttc aagtgcccgc tttgtgtatg aggcttgtgg ggcaagagtc
     1021 tttgtgcagc gtttccgcct gcagcatggg cttgagggcc atactggttg tgttaatacc
     1081 ttgcacttta accagcgcgg cacctggctg gccagtggca gcgatgacct gaaagtggtg
     1141 gtttgggact gggtacggcg acagccagtg ttggactttg agagcggcca caaaagcaat
     1201 gtcttccagg ccaagttcct tcctaacagt ggcgattcca ccctggccat gtgtgcccgt
     1261 gatgggcagg ttcgggtagc agagttgtct gctacacagt gctgcaagaa tacaaagcgt
     1321 gtggcccagc acaagggagc atcccacaag ttggccctgg aaccagactc tccctgtacg
     1381 ttcctatctg caggtgaaga tgcagttgtc ttcaccattg acctcagaca agaccggcca
     1441 gcttcgaaac tggtggtgac aaaagaaaag gagaagaagg tggggctgta tacaatctat
     1501 gtgaatcctg ccaataccca ccagtttgca gtgggtggac gagatcagtt tgtaaggatt
     1561 tatgaccaga ggaaaattga tgagaatgaa aacaatggag tactcaagaa attctgccct
     1621 catcacctgg tgaacagtga gtccaaagca aacatcacct gtcttgtgta cagccacgac
     1681 ggcacagagc tcctggccag ttacaatgat gaagacattt acctcttcaa ctcctctcac
     1741 agtgatgggg cccagtatat taagagatat aagggccaca gaaataacgc cacagtaaaa
     1801 ggcgtcaatt tctatggccc caagagtgag tttgtggtga gcggtagtga ctgcgggcac
     1861 atcttcctct gggagaaatc atcctgccag atcattcagt tcatggaggg ggacaaggga
     1921 ggcgtggtaa actgtcttga gccccaccct catctgcctg tgctggcaac cagtggccta
     1981 gaccatgatg tcaagatctg ggcacccaca gctgaaactt ccactgaact tacagggtta
     2041 aaggatgtga ttaagaagaa caagcgggaa cgggatgaag atagcttaca ccacaccgac
     2101 ctatttgata gccacatgct ctggttcctc atgcatcacc tgagacaaag acgccatcac
     2161 cggcgctggc gagaacctgg ggttggggcc acagacgcag actcggatga gtctcccagc
     2221 tcctcagata catcggacga ggaggagggc cctgaccggg tgcagtgcat gccatcctga
     2281 ggcctcgtac ccaggagggg caggctgggg ctgccaaccc gatcctgcct gggcagccct
     2341 ttcctgtccc gggctctaac attcagcaga aacgcacttt ggactttttt gctttagatt
     2401 taaaaagaaa agaaaagaaa aaaaaaaaga catcccagga ggacaagcca gaggggagca
     2461 aacctacaga gcatctagaa gtgggaattg agccctggaa tggggttcca tggagaggtg
     2521 cataggactt ggcagaaatg gcctctcccc aaagcctttt tttttggggg aggggggagc
     2581 ctattttgtt aactggtttg gggtagggaa tggggtttcc ttttctttga tctcccttgt
     2641 ttcttggtgg ggggtggggg gataactggc tgttcagtac caaggggcca gactggggtg
     2701 gtagaaatgc cactctctct ttggtttagg tttttgactt tattttcttt attttttaaa
     2761 attctatgac agttgcattg ttttttcttc cccctgagca accaacccca tcccaggatc
     2821 ctgtttttct ggggagtcct tagagcccct aaccatccca cactcttcac tttcttttcc
     2881 accccattca ttctctgtac ttatcacagt gttttgcact tgattatgta tccttcactc
     2941 tcttctcttc atcccatcac cccctcagta ggtctggtga gggaggttgg ggggaggtgg
     3001 gaggagggac agaagtggaa gaataggaag gtggttacct cttctgttac ttaaaaaaaa
     3061 aaagttgttt ggtggcagca atctccctgt ccctatcact gttagaggcc taattttata
     3121 tctataaata tattaaaaag caagtcaaaa ttggatgtat catgttaaaa ttattgttga
     3181 agtttaaata cctatatatt ctctatgact gcaataaagg gacttacagg aga
//
LOCUS       XM_032607769            3122 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X8, mRNA.
ACCESSION   XM_032607769
VERSION     XM_032607769.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3122
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             379..2169
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463660.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    940..1893
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(949..951,1003..1005,1015..1017,1033..1038,
                     1075..1080,1138..1140,1150..1152,1168..1173,1216..1221,
                     1273..1275,1288..1290,1306..1311,1357..1359,1420..1422,
                     1432..1434,1450..1455,1510..1515,1585..1587,1597..1599,
                     1615..1620,1663..1668,1726..1728,1741..1743,1759..1764,
                     1798..1803,1858..1860,1870..1872,1888..1893)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    967..1077
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1093..1218
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1231..1356
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1378..1524
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1543..1662
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1684..1797
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1816..1890
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ggagagctcg cgcgaccgct cgctccccca gtcttctcca gcacatcgtc gcaaacgggg
       61 ccggaaagcg tggcggcgca ggcgcaagcg cagagagcgg aggcggtggt ggtggcggcc
      121 gctggccagt tccttcagtg aatctacaga cctattttct caggagctca gcctggccct
      181 acttcagtga taaaggagga aaggaataaa ttctgtgaac ttttttcctc aaagaaaaga
      241 tcgcttcttg caagaacctt aaaccagtgt cccagaagat gagctttaca acctctgggt
      301 ataggttcaa cctcatggct ctccttttct gagaagtggt tctcagagct aggctggctg
      361 cagtaaacat cattcaagat gtccagcaaa gggagcagca cagatggcaa aacagactta
      421 gctaatggaa gcctgtctag cagtccagag gagatgtctg gtgctgagga ggggagggag
      481 acatcctcag gcattgaagt ggaggcctca gacctgagct tgagcttgac cggggatgat
      541 ggtggcccca accgcaccag cacagaaagt cgaggcacag atacagagag ctcaggtgaa
      601 gacaaggact ctgacagcat ggaggacact ggccattact ccatcaatga tgaaaaccaa
      661 gtccatgacc gctcagagga agaagaggat gaagaagagg aggaagaaga gcatcctcgt
      721 cgtcgtgtac agcgcaagcg ggcaaaccgt gaccaggact catcagatga tgagcgggcc
      781 ctggaggact gggtgtcctc ggagacctca gtcctgcccc gacctcgctg gcaagccctt
      841 cctgcccttc gggagcggga gctgggttca agtgcccgct ttgtgtatga ggcttgtggg
      901 gcaagagtct ttgtgcagcg tttccgcctg cagcatgggc ttgagggcca tactggttgt
      961 gttaatacct tgcactttaa ccagcgcggc acctggctgg ccagtggcag cgatgacctg
     1021 aaagtggtgg tttgggactg ggtacggcga cagccagtgt tggactttga gagcggccac
     1081 aaaagcaatg tcttccaggc caagttcctt cctaacagtg gcgattccac cctggccatg
     1141 tgtgcccgtg atgggcaggt tcgggtagca gagttgtctg ctacacagtg ctgcaagaat
     1201 acaaagcgtg tggcccagca caagggagca tcccacaagt tggccctgga accagactct
     1261 ccctgtacgt tcctatctgc aggtgaagat gcagttgtct tcaccattga cctcagacaa
     1321 gaccggccag cttcgaaact ggtggtgaca aaagaaaagg agaagaaggt ggggctgtat
     1381 acaatctatg tgaatcctgc caatacccac cagtttgcag tgggtggacg agatcagttt
     1441 gtaaggattt atgaccagag gaaaattgat gagaatgaaa acaatggagt actcaagaaa
     1501 ttctgccctc atcacctggt gaacagtgag tccaaagcaa acatcacctg tcttgtgtac
     1561 agccacgacg gcacagagct cctggccagt tacaatgatg aagacattta cctcttcaac
     1621 tcctctcaca gtgatggggc ccagtatatt aagagatata agggccacag aaataacgcc
     1681 acagtaaaag gcgtcaattt ctatggcccc aagagtgagt ttgtggtgag cggtagtgac
     1741 tgcgggcaca tcttcctctg ggagaaatca tcctgccaga tcattcagtt catggagggg
     1801 gacaagggag gcgtggtaaa ctgtcttgag ccccaccctc atctgcctgt gctggcaacc
     1861 agtggcctag accatgatgt caagatctgg gcacccacag ctgaaacttc cactgaactt
     1921 acagggttaa aggatgtgat taagaagaac aagcgggaac gggatgaaga tagcttacac
     1981 cacaccgacc tatttgatag ccacatgctc tggttcctca tgcatcacct gagacaaaga
     2041 cgccatcacc ggcgctggcg agaacctggg gttggggcca cagacgcaga ctcggatgag
     2101 tctcccagct cctcagatac atcggacgag gaggagggcc ctgaccgggt gcagtgcatg
     2161 ccatcctgag gcctcgtacc caggaggggc aggctggggc tgccaacccg atcctgcctg
     2221 ggcagccctt tcctgtcccg ggctctaaca ttcagcagaa acgcactttg gacttttttg
     2281 ctttagattt aaaaagaaaa gaaaagaaaa aaaaaaagac atcccaggag gacaagccag
     2341 aggggagcaa acctacagag catctagaag tgggaattga gccctggaat ggggttccat
     2401 ggagaggtgc ataggacttg gcagaaatgg cctctcccca aagccttttt ttttggggga
     2461 ggggggagcc tattttgtta actggtttgg ggtagggaat ggggtttcct tttctttgat
     2521 ctcccttgtt tcttggtggg gggtgggggg ataactggct gttcagtacc aaggggccag
     2581 actggggtgg tagaaatgcc actctctctt tggtttaggt ttttgacttt attttcttta
     2641 ttttttaaaa ttctatgaca gttgcattgt tttttcttcc ccctgagcaa ccaaccccat
     2701 cccaggatcc tgtttttctg gggagtcctt agagccccta accatcccac actcttcact
     2761 ttcttttcca ccccattcat tctctgtact tatcacagtg ttttgcactt gattatgtat
     2821 ccttcactct cttctcttca tcccatcacc ccctcagtag gtctggtgag ggaggttggg
     2881 gggaggtggg aggagggaca gaagtggaag aataggaagg tggttacctc ttctgttact
     2941 taaaaaaaaa aagttgtttg gtggcagcaa tctccctgtc cctatcactg ttagaggcct
     3001 aattttatat ctataaatat attaaaaagc aagtcaaaat tggatgtatc atgttaaaat
     3061 tattgttgaa gtttaaatac ctatatattc tctatgactg caataaaggg acttacagga
     3121 ga
//
LOCUS       XM_032607779            3091 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X9, mRNA.
ACCESSION   XM_032607779
VERSION     XM_032607779.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3091
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3091
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             348..2138
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463670.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    909..1862
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(918..920,972..974,984..986,1002..1007,1044..1049,
                     1107..1109,1119..1121,1137..1142,1185..1190,1242..1244,
                     1257..1259,1275..1280,1326..1328,1389..1391,1401..1403,
                     1419..1424,1479..1484,1554..1556,1566..1568,1584..1589,
                     1632..1637,1695..1697,1710..1712,1728..1733,1767..1772,
                     1827..1829,1839..1841,1857..1862)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    936..1046
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1062..1187
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1200..1325
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1347..1493
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1512..1631
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1653..1766
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1785..1859
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ggagagctcg cgcgaccgct cgctccccca gtcttctcca gcacatcgtc gcaaacgggg
       61 ccggaaagcg tggcggcgca ggcgcaagcg cagagagcgg aggcggtggt ggtggcggcc
      121 gctggccagt tccttcagtg aatctacaga cctattttct caggagctca gcctggccct
      181 acttcagtga taaaggagga aagaaaagat cgcttcttgc aagaacctta aaccagtgtc
      241 ccagaagatg agctttacaa cctctgggta taggttcaac ctcatggctc tccttttctg
      301 agaagtggtt ctcagagcta ggctggctgc agtaaacatc attcaagatg tccagcaaag
      361 ggagcagcac agatggcaaa acagacttag ctaatggaag cctgtctagc agtccagagg
      421 agatgtctgg tgctgaggag gggagggaga catcctcagg cattgaagtg gaggcctcag
      481 acctgagctt gagcttgacc ggggatgatg gtggccccaa ccgcaccagc acagaaagtc
      541 gaggcacaga tacagagagc tcaggtgaag acaaggactc tgacagcatg gaggacactg
      601 gccattactc catcaatgat gaaaaccaag tccatgaccg ctcagaggaa gaagaggatg
      661 aagaagagga ggaagaagag catcctcgtc gtcgtgtaca gcgcaagcgg gcaaaccgtg
      721 accaggactc atcagatgat gagcgggccc tggaggactg ggtgtcctcg gagacctcag
      781 tcctgccccg acctcgctgg caagcccttc ctgcccttcg ggagcgggag ctgggttcaa
      841 gtgcccgctt tgtgtatgag gcttgtgggg caagagtctt tgtgcagcgt ttccgcctgc
      901 agcatgggct tgagggccat actggttgtg ttaatacctt gcactttaac cagcgcggca
      961 cctggctggc cagtggcagc gatgacctga aagtggtggt ttgggactgg gtacggcgac
     1021 agccagtgtt ggactttgag agcggccaca aaagcaatgt cttccaggcc aagttccttc
     1081 ctaacagtgg cgattccacc ctggccatgt gtgcccgtga tgggcaggtt cgggtagcag
     1141 agttgtctgc tacacagtgc tgcaagaata caaagcgtgt ggcccagcac aagggagcat
     1201 cccacaagtt ggccctggaa ccagactctc cctgtacgtt cctatctgca ggtgaagatg
     1261 cagttgtctt caccattgac ctcagacaag accggccagc ttcgaaactg gtggtgacaa
     1321 aagaaaagga gaagaaggtg gggctgtata caatctatgt gaatcctgcc aatacccacc
     1381 agtttgcagt gggtggacga gatcagtttg taaggattta tgaccagagg aaaattgatg
     1441 agaatgaaaa caatggagta ctcaagaaat tctgccctca tcacctggtg aacagtgagt
     1501 ccaaagcaaa catcacctgt cttgtgtaca gccacgacgg cacagagctc ctggccagtt
     1561 acaatgatga agacatttac ctcttcaact cctctcacag tgatggggcc cagtatatta
     1621 agagatataa gggccacaga aataacgcca cagtaaaagg cgtcaatttc tatggcccca
     1681 agagtgagtt tgtggtgagc ggtagtgact gcgggcacat cttcctctgg gagaaatcat
     1741 cctgccagat cattcagttc atggaggggg acaagggagg cgtggtaaac tgtcttgagc
     1801 cccaccctca tctgcctgtg ctggcaacca gtggcctaga ccatgatgtc aagatctggg
     1861 cacccacagc tgaaacttcc actgaactta cagggttaaa ggatgtgatt aagaagaaca
     1921 agcgggaacg ggatgaagat agcttacacc acaccgacct atttgatagc cacatgctct
     1981 ggttcctcat gcatcacctg agacaaagac gccatcaccg gcgctggcga gaacctgggg
     2041 ttggggccac agacgcagac tcggatgagt ctcccagctc ctcagataca tcggacgagg
     2101 aggagggccc tgaccgggtg cagtgcatgc catcctgagg cctcgtaccc aggaggggca
     2161 ggctggggct gccaacccga tcctgcctgg gcagcccttt cctgtcccgg gctctaacat
     2221 tcagcagaaa cgcactttgg acttttttgc tttagattta aaaagaaaag aaaagaaaaa
     2281 aaaaaagaca tcccaggagg acaagccaga ggggagcaaa cctacagagc atctagaagt
     2341 gggaattgag ccctggaatg gggttccatg gagaggtgca taggacttgg cagaaatggc
     2401 ctctccccaa agcctttttt tttgggggag gggggagcct attttgttaa ctggtttggg
     2461 gtagggaatg gggtttcctt ttctttgatc tcccttgttt cttggtgggg ggtgggggga
     2521 taactggctg ttcagtacca aggggccaga ctggggtggt agaaatgcca ctctctcttt
     2581 ggtttaggtt tttgacttta ttttctttat tttttaaaat tctatgacag ttgcattgtt
     2641 ttttcttccc cctgagcaac caaccccatc ccaggatcct gtttttctgg ggagtcctta
     2701 gagcccctaa ccatcccaca ctcttcactt tcttttccac cccattcatt ctctgtactt
     2761 atcacagtgt tttgcacttg attatgtatc cttcactctc ttctcttcat cccatcaccc
     2821 cctcagtagg tctggtgagg gaggttgggg ggaggtggga ggagggacag aagtggaaga
     2881 ataggaaggt ggttacctct tctgttactt aaaaaaaaaa agttgtttgg tggcagcaat
     2941 ctccctgtcc ctatcactgt tagaggccta attttatatc tataaatata ttaaaaagca
     3001 agtcaaaatt ggatgtatca tgttaaaatt attgttgaag tttaaatacc tatatattct
     3061 ctatgactgc aataaaggga cttacaggag a
//
LOCUS       XM_032607787            3108 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X10, mRNA.
ACCESSION   XM_032607787
VERSION     XM_032607787.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3108
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             365..2155
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463678.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    926..1879
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(935..937,989..991,1001..1003,1019..1024,1061..1066,
                     1124..1126,1136..1138,1154..1159,1202..1207,1259..1261,
                     1274..1276,1292..1297,1343..1345,1406..1408,1418..1420,
                     1436..1441,1496..1501,1571..1573,1583..1585,1601..1606,
                     1649..1654,1712..1714,1727..1729,1745..1750,1784..1789,
                     1844..1846,1856..1858,1874..1879)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    953..1063
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1079..1204
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1217..1342
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1364..1510
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1529..1648
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1670..1783
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1802..1876
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ctcccctggc ccactcctct tcaagatagg tttgactcct ttcccaagct cccagggctc
       61 agggcttctt cccctgacct gagtcaccgc cgggaggatt gactgccttc cctcagtcct
      121 tcagtgaatc tacagaccta ttttctcagg agctcagcct ggccctactt cagtgataaa
      181 ggaggaaagg aataaattct gtgaactttt ttcctcaaag aaaagatcgc ttcttgcaag
      241 aaccttaaac cagtgtccca gaagatgagc tttacaacct ctgggtatag gttcaacctc
      301 atggctctcc ttttctgaga agtggttctc agagctaggc tggctgcagt aaacatcatt
      361 caagatgtcc agcaaaggga gcagcacaga tggcaaaaca gacttagcta atggaagcct
      421 gtctagcagt ccagaggaga tgtctggtgc tgaggagggg agggagacat cctcaggcat
      481 tgaagtggag gcctcagacc tgagcttgag cttgaccggg gatgatggtg gccccaaccg
      541 caccagcaca gaaagtcgag gcacagatac agagagctca ggtgaagaca aggactctga
      601 cagcatggag gacactggcc attactccat caatgatgaa aaccaagtcc atgaccgctc
      661 agaggaagaa gaggatgaag aagaggagga agaagagcat cctcgtcgtc gtgtacagcg
      721 caagcgggca aaccgtgacc aggactcatc agatgatgag cgggccctgg aggactgggt
      781 gtcctcggag acctcagtcc tgccccgacc tcgctggcaa gcccttcctg cccttcggga
      841 gcgggagctg ggttcaagtg cccgctttgt gtatgaggct tgtggggcaa gagtctttgt
      901 gcagcgtttc cgcctgcagc atgggcttga gggccatact ggttgtgtta ataccttgca
      961 ctttaaccag cgcggcacct ggctggccag tggcagcgat gacctgaaag tggtggtttg
     1021 ggactgggta cggcgacagc cagtgttgga ctttgagagc ggccacaaaa gcaatgtctt
     1081 ccaggccaag ttccttccta acagtggcga ttccaccctg gccatgtgtg cccgtgatgg
     1141 gcaggttcgg gtagcagagt tgtctgctac acagtgctgc aagaatacaa agcgtgtggc
     1201 ccagcacaag ggagcatccc acaagttggc cctggaacca gactctccct gtacgttcct
     1261 atctgcaggt gaagatgcag ttgtcttcac cattgacctc agacaagacc ggccagcttc
     1321 gaaactggtg gtgacaaaag aaaaggagaa gaaggtgggg ctgtatacaa tctatgtgaa
     1381 tcctgccaat acccaccagt ttgcagtggg tggacgagat cagtttgtaa ggatttatga
     1441 ccagaggaaa attgatgaga atgaaaacaa tggagtactc aagaaattct gccctcatca
     1501 cctggtgaac agtgagtcca aagcaaacat cacctgtctt gtgtacagcc acgacggcac
     1561 agagctcctg gccagttaca atgatgaaga catttacctc ttcaactcct ctcacagtga
     1621 tggggcccag tatattaaga gatataaggg ccacagaaat aacgccacag taaaaggcgt
     1681 caatttctat ggccccaaga gtgagtttgt ggtgagcggt agtgactgcg ggcacatctt
     1741 cctctgggag aaatcatcct gccagatcat tcagttcatg gagggggaca agggaggcgt
     1801 ggtaaactgt cttgagcccc accctcatct gcctgtgctg gcaaccagtg gcctagacca
     1861 tgatgtcaag atctgggcac ccacagctga aacttccact gaacttacag ggttaaagga
     1921 tgtgattaag aagaacaagc gggaacggga tgaagatagc ttacaccaca ccgacctatt
     1981 tgatagccac atgctctggt tcctcatgca tcacctgaga caaagacgcc atcaccggcg
     2041 ctggcgagaa cctggggttg gggccacaga cgcagactcg gatgagtctc ccagctcctc
     2101 agatacatcg gacgaggagg agggccctga ccgggtgcag tgcatgccat cctgaggcct
     2161 cgtacccagg aggggcaggc tggggctgcc aacccgatcc tgcctgggca gccctttcct
     2221 gtcccgggct ctaacattca gcagaaacgc actttggact tttttgcttt agatttaaaa
     2281 agaaaagaaa agaaaaaaaa aaagacatcc caggaggaca agccagaggg gagcaaacct
     2341 acagagcatc tagaagtggg aattgagccc tggaatgggg ttccatggag aggtgcatag
     2401 gacttggcag aaatggcctc tccccaaagc cttttttttt gggggagggg ggagcctatt
     2461 ttgttaactg gtttggggta gggaatgggg tttccttttc tttgatctcc cttgtttctt
     2521 ggtggggggt ggggggataa ctggctgttc agtaccaagg ggccagactg gggtggtaga
     2581 aatgccactc tctctttggt ttaggttttt gactttattt tctttatttt ttaaaattct
     2641 atgacagttg cattgttttt tcttccccct gagcaaccaa ccccatccca ggatcctgtt
     2701 tttctgggga gtccttagag cccctaacca tcccacactc ttcactttct tttccacccc
     2761 attcattctc tgtacttatc acagtgtttt gcacttgatt atgtatcctt cactctcttc
     2821 tcttcatccc atcaccccct cagtaggtct ggtgagggag gttgggggga ggtgggagga
     2881 gggacagaag tggaagaata ggaaggtggt tacctcttct gttacttaaa aaaaaaaagt
     2941 tgtttggtgg cagcaatctc cctgtcccta tcactgttag aggcctaatt ttatatctat
     3001 aaatatatta aaaagcaagt caaaattgga tgtatcatgt taaaattatt gttgaagttt
     3061 aaatacctat atattctcta tgactgcaat aaagggactt acaggaga
//
LOCUS       XM_032607796            5163 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X11, mRNA.
ACCESSION   XM_032607796
VERSION     XM_032607796.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5163
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5163
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 18
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             2420..4210
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463687.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    2981..3934
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(2990..2992,3044..3046,3056..3058,3074..3079,
                     3116..3121,3179..3181,3191..3193,3209..3214,3257..3262,
                     3314..3316,3329..3331,3347..3352,3398..3400,3461..3463,
                     3473..3475,3491..3496,3551..3556,3626..3628,3638..3640,
                     3656..3661,3704..3709,3767..3769,3782..3784,3800..3805,
                     3839..3844,3899..3901,3911..3913,3929..3934)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    3008..3118
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    3134..3259
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    3272..3397
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    3419..3565
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    3584..3703
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    3725..3838
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    3857..3931
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ttggatttct ggtagcagag aatagtgctg tggttgagtt tcataggctg tgacgggaga
       61 gctgagtggc tctggaaggt aggcctggct gattcttaat atctttatga cttgtaggaa
      121 gagtttgagt gtgacattgg tgagttttat tccacacagt gttctgatta gaaattgctc
      181 attatgaact agaataagat tattattggc agtatgtgtg tgtatcaata agataaaaag
      241 gggaaaatac agtttttaga actgggtagg tctgggttta aatactgtac taagatttat
      301 tagccatgtg accttgggca agttacttaa acttttctga gtcttaattt cacatctgta
      361 aaagtgggat aatactcctt atgtcctagt gtcattgtca gtattgtatg aggaagctta
      421 tataaaggtc ttaaattatg cctagcccaa gatggacact aaaaaaaaat actttctctt
      481 ttctttgcac atcattgata tagctttgaa taagttatac gttagtttac acttctttgc
      541 attttgcttt tgaacacgtt tttctggtta atttttcaga ttcatttttt tttaattaat
      601 tgatttttat ttttggctgc attgggtctt tgtcgctgtg tgtgggcttt ctttagttgt
      661 ggcgagcggg ggctactctt tgttgtggtg cacgggcttc tcattgcagt ggcttctctt
      721 gttgcggagc atgggcttta ggtgcgctgg cttcagtagt tgtggcacgc gggctctagc
      781 gcacaggctc agtagtttgg cgcacgggct tagttgctcc gcgggatttg ggatcttccc
      841 ggaccaggga tcttcttaac cattgcgcca ccagggaagc ccttcagatt catttttaat
      901 tggtcagctt agatgtgttc tttgtaggtg cccacctagg gttgtcttct gaacatgatt
      961 cagtttagtc tggtgggagt tcaagaccag aggacagcag gaatattaga tgttgatgta
     1021 tgtatatttc taaatgcatt cttaaattaa acatcaataa gtttcctttg ttctttgctc
     1081 ctgcctcttg gtctctcttt tagctcacct aatcagagtt gacctaagta ttgtaattcc
     1141 ttttccttcc agcttcagtg ttgttcacca cctcagctcc agctacctct tatgcctttt
     1201 cctttttgcc atagaaggaa tacatttttt tttccaagct gttgggctct gcagtggtcc
     1261 tcatcaatag ctaatcaaag aactagacca tgaaaaggtc tcctttcttt ctgaaataaa
     1321 tctgggctag ggagttagga atgcagagtt ttttatttca tctccccagc tggaccatgt
     1381 taataatacg acagcccaga taaaaagttt ttaacctctt gttggttttt ctttcacatc
     1441 tttttgaggg aggtaagggc acatgaaaat taagaaagtt gttgataata acattgctat
     1501 gaaagcaact gtgttctttc aggccagtga tcaacttaga gttgaccaac tttcattacc
     1561 accatctagg gtctaaattc tctctgttca aaggtaaaga ctcttggggt agagggtagt
     1621 gaggtgcatt ttattatttg tgttatttat gaggtctaga gttctgtgtt cagccaggca
     1681 agagtgggtg tgggaggaga aaaggcagta tgttgaaaga ggcataattt tgactgttcc
     1741 ttattactgt atgtgctggg taagaaccca ctcccactat caccactccc aagaagggct
     1801 tcacatttta tgctccaggt gacacctgtg tatacagtga atcaatgttt ttagtcttta
     1861 gaccacaact gtaaaattct tatatttctg aagatatttt atatttcagg gtattgcata
     1921 agaattgttg caccttacta agaagtattt cctaccgtgg ctgcagtggg aggctaggta
     1981 tgcttatgac cttagttccc accaccaacc taacagggca ttttattcag cagcctgtta
     2041 aatgtgtaag agtcagcctc agtgctatga tccttagttt tgactaggat caacctaaga
     2101 cagaagcttg tcttcagaga aagctaaaag aaatgtcttt ttgttgccag tttaaaacaa
     2161 tactggcatt tcaaaagcaa acggactcca atagaagacg ttctatagaa gtatgccctg
     2221 ttgtgggaga ctgagatctt cagagtttca tggtctaggt cctgtattct atcagaaaag
     2281 atcgcttctt gcaagaacct taaaccagtg tcccagaaga tgagctttac aacctctggg
     2341 tataggttca acctcatggc tctccttttc tgagaagtgg ttctcagagc taggctggct
     2401 gcagtaaaca tcattcaaga tgtccagcaa agggagcagc acagatggca aaacagactt
     2461 agctaatgga agcctgtcta gcagtccaga ggagatgtct ggtgctgagg aggggaggga
     2521 gacatcctca ggcattgaag tggaggcctc agacctgagc ttgagcttga ccggggatga
     2581 tggtggcccc aaccgcacca gcacagaaag tcgaggcaca gatacagaga gctcaggtga
     2641 agacaaggac tctgacagca tggaggacac tggccattac tccatcaatg atgaaaacca
     2701 agtccatgac cgctcagagg aagaagagga tgaagaagag gaggaagaag agcatcctcg
     2761 tcgtcgtgta cagcgcaagc gggcaaaccg tgaccaggac tcatcagatg atgagcgggc
     2821 cctggaggac tgggtgtcct cggagacctc agtcctgccc cgacctcgct ggcaagccct
     2881 tcctgccctt cgggagcggg agctgggttc aagtgcccgc tttgtgtatg aggcttgtgg
     2941 ggcaagagtc tttgtgcagc gtttccgcct gcagcatggg cttgagggcc atactggttg
     3001 tgttaatacc ttgcacttta accagcgcgg cacctggctg gccagtggca gcgatgacct
     3061 gaaagtggtg gtttgggact gggtacggcg acagccagtg ttggactttg agagcggcca
     3121 caaaagcaat gtcttccagg ccaagttcct tcctaacagt ggcgattcca ccctggccat
     3181 gtgtgcccgt gatgggcagg ttcgggtagc agagttgtct gctacacagt gctgcaagaa
     3241 tacaaagcgt gtggcccagc acaagggagc atcccacaag ttggccctgg aaccagactc
     3301 tccctgtacg ttcctatctg caggtgaaga tgcagttgtc ttcaccattg acctcagaca
     3361 agaccggcca gcttcgaaac tggtggtgac aaaagaaaag gagaagaagg tggggctgta
     3421 tacaatctat gtgaatcctg ccaataccca ccagtttgca gtgggtggac gagatcagtt
     3481 tgtaaggatt tatgaccaga ggaaaattga tgagaatgaa aacaatggag tactcaagaa
     3541 attctgccct catcacctgg tgaacagtga gtccaaagca aacatcacct gtcttgtgta
     3601 cagccacgac ggcacagagc tcctggccag ttacaatgat gaagacattt acctcttcaa
     3661 ctcctctcac agtgatgggg cccagtatat taagagatat aagggccaca gaaataacgc
     3721 cacagtaaaa ggcgtcaatt tctatggccc caagagtgag tttgtggtga gcggtagtga
     3781 ctgcgggcac atcttcctct gggagaaatc atcctgccag atcattcagt tcatggaggg
     3841 ggacaaggga ggcgtggtaa actgtcttga gccccaccct catctgcctg tgctggcaac
     3901 cagtggccta gaccatgatg tcaagatctg ggcacccaca gctgaaactt ccactgaact
     3961 tacagggtta aaggatgtga ttaagaagaa caagcgggaa cgggatgaag atagcttaca
     4021 ccacaccgac ctatttgata gccacatgct ctggttcctc atgcatcacc tgagacaaag
     4081 acgccatcac cggcgctggc gagaacctgg ggttggggcc acagacgcag actcggatga
     4141 gtctcccagc tcctcagata catcggacga ggaggagggc cctgaccggg tgcagtgcat
     4201 gccatcctga ggcctcgtac ccaggagggg caggctgggg ctgccaaccc gatcctgcct
     4261 gggcagccct ttcctgtccc gggctctaac attcagcaga aacgcacttt ggactttttt
     4321 gctttagatt taaaaagaaa agaaaagaaa aaaaaaaaga catcccagga ggacaagcca
     4381 gaggggagca aacctacaga gcatctagaa gtgggaattg agccctggaa tggggttcca
     4441 tggagaggtg cataggactt ggcagaaatg gcctctcccc aaagcctttt tttttggggg
     4501 aggggggagc ctattttgtt aactggtttg gggtagggaa tggggtttcc ttttctttga
     4561 tctcccttgt ttcttggtgg ggggtggggg gataactggc tgttcagtac caaggggcca
     4621 gactggggtg gtagaaatgc cactctctct ttggtttagg tttttgactt tattttcttt
     4681 attttttaaa attctatgac agttgcattg ttttttcttc cccctgagca accaacccca
     4741 tcccaggatc ctgtttttct ggggagtcct tagagcccct aaccatccca cactcttcac
     4801 tttcttttcc accccattca ttctctgtac ttatcacagt gttttgcact tgattatgta
     4861 tccttcactc tcttctcttc atcccatcac cccctcagta ggtctggtga gggaggttgg
     4921 ggggaggtgg gaggagggac agaagtggaa gaataggaag gtggttacct cttctgttac
     4981 ttaaaaaaaa aaagttgttt ggtggcagca atctccctgt ccctatcact gttagaggcc
     5041 taattttata tctataaata tattaaaaag caagtcaaaa ttggatgtat catgttaaaa
     5101 ttattgttga agtttaaata cctatatatt ctctatgact gcaataaagg gacttacagg
     5161 aga
//
LOCUS       XM_032607806            2979 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X12, mRNA.
ACCESSION   XM_032607806
VERSION     XM_032607806.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2979
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 10 long SRA reads, 18
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             236..2026
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463697.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    797..1750
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(806..808,860..862,872..874,890..895,932..937,
                     995..997,1007..1009,1025..1030,1073..1078,1130..1132,
                     1145..1147,1163..1168,1214..1216,1277..1279,1289..1291,
                     1307..1312,1367..1372,1442..1444,1454..1456,1472..1477,
                     1520..1525,1583..1585,1598..1600,1616..1621,1655..1660,
                     1715..1717,1727..1729,1745..1750)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    824..934
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    950..1075
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1088..1213
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1235..1381
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1400..1519
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1541..1654
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1673..1747
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 agagagcgga ggcggtggtg gtggcggccg ctggccagtg taagatggcg gcggcggtgg
       61 tggcggcagt ggacggggcg gctgggcgtg gaagagtcgg agcagcctct ggcagaagga
      121 tgacccaaga caggaagcag gctgctgagc ctcgccggct cccgtgcttg taactgcccc
      181 agccggacac cccccccttg acctacccgg ctggctgcag taaacatcat tcaagatgtc
      241 cagcaaaggg agcagcacag atggcaaaac agacttagct aatggaagcc tgtctagcag
      301 tccagaggag atgtctggtg ctgaggaggg gagggagaca tcctcaggca ttgaagtgga
      361 ggcctcagac ctgagcttga gcttgaccgg ggatgatggt ggccccaacc gcaccagcac
      421 agaaagtcga ggcacagata cagagagctc aggtgaagac aaggactctg acagcatgga
      481 ggacactggc cattactcca tcaatgatga aaaccaagtc catgaccgct cagaggaaga
      541 agaggatgaa gaagaggagg aagaagagca tcctcgtcgt cgtgtacagc gcaagcgggc
      601 aaaccgtgac caggactcat cagatgatga gcgggccctg gaggactggg tgtcctcgga
      661 gacctcagtc ctgccccgac ctcgctggca agcccttcct gcccttcggg agcgggagct
      721 gggttcaagt gcccgctttg tgtatgaggc ttgtggggca agagtctttg tgcagcgttt
      781 ccgcctgcag catgggcttg agggccatac tggttgtgtt aataccttgc actttaacca
      841 gcgcggcacc tggctggcca gtggcagcga tgacctgaaa gtggtggttt gggactgggt
      901 acggcgacag ccagtgttgg actttgagag cggccacaaa agcaatgtct tccaggccaa
      961 gttccttcct aacagtggcg attccaccct ggccatgtgt gcccgtgatg ggcaggttcg
     1021 ggtagcagag ttgtctgcta cacagtgctg caagaataca aagcgtgtgg cccagcacaa
     1081 gggagcatcc cacaagttgg ccctggaacc agactctccc tgtacgttcc tatctgcagg
     1141 tgaagatgca gttgtcttca ccattgacct cagacaagac cggccagctt cgaaactggt
     1201 ggtgacaaaa gaaaaggaga agaaggtggg gctgtataca atctatgtga atcctgccaa
     1261 tacccaccag tttgcagtgg gtggacgaga tcagtttgta aggatttatg accagaggaa
     1321 aattgatgag aatgaaaaca atggagtact caagaaattc tgccctcatc acctggtgaa
     1381 cagtgagtcc aaagcaaaca tcacctgtct tgtgtacagc cacgacggca cagagctcct
     1441 ggccagttac aatgatgaag acatttacct cttcaactcc tctcacagtg atggggccca
     1501 gtatattaag agatataagg gccacagaaa taacgccaca gtaaaaggcg tcaatttcta
     1561 tggccccaag agtgagtttg tggtgagcgg tagtgactgc gggcacatct tcctctggga
     1621 gaaatcatcc tgccagatca ttcagttcat ggagggggac aagggaggcg tggtaaactg
     1681 tcttgagccc caccctcatc tgcctgtgct ggcaaccagt ggcctagacc atgatgtcaa
     1741 gatctgggca cccacagctg aaacttccac tgaacttaca gggttaaagg atgtgattaa
     1801 gaagaacaag cgggaacggg atgaagatag cttacaccac accgacctat ttgatagcca
     1861 catgctctgg ttcctcatgc atcacctgag acaaagacgc catcaccggc gctggcgaga
     1921 acctggggtt ggggccacag acgcagactc ggatgagtct cccagctcct cagatacatc
     1981 ggacgaggag gagggccctg accgggtgca gtgcatgcca tcctgaggcc tcgtacccag
     2041 gaggggcagg ctggggctgc caacccgatc ctgcctgggc agccctttcc tgtcccgggc
     2101 tctaacattc agcagaaacg cactttggac ttttttgctt tagatttaaa aagaaaagaa
     2161 aagaaaaaaa aaaagacatc ccaggaggac aagccagagg ggagcaaacc tacagagcat
     2221 ctagaagtgg gaattgagcc ctggaatggg gttccatgga gaggtgcata ggacttggca
     2281 gaaatggcct ctccccaaag cctttttttt tgggggaggg gggagcctat tttgttaact
     2341 ggtttggggt agggaatggg gtttcctttt ctttgatctc ccttgtttct tggtgggggg
     2401 tggggggata actggctgtt cagtaccaag gggccagact ggggtggtag aaatgccact
     2461 ctctctttgg tttaggtttt tgactttatt ttctttattt tttaaaattc tatgacagtt
     2521 gcattgtttt ttcttccccc tgagcaacca accccatccc aggatcctgt ttttctgggg
     2581 agtccttaga gcccctaacc atcccacact cttcactttc ttttccaccc cattcattct
     2641 ctgtacttat cacagtgttt tgcacttgat tatgtatcct tcactctctt ctcttcatcc
     2701 catcaccccc tcagtaggtc tggtgaggga ggttgggggg aggtgggagg agggacagaa
     2761 gtggaagaat aggaaggtgg ttacctcttc tgttacttaa aaaaaaaaag ttgtttggtg
     2821 gcagcaatct ccctgtccct atcactgtta gaggcctaat tttatatcta taaatatatt
     2881 aaaaagcaag tcaaaattgg atgtatcatg ttaaaattat tgttgaagtt taaataccta
     2941 tatattctct atgactgcaa taaagggact tacaggaga
//
LOCUS       XM_032607817            2926 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X13, mRNA.
ACCESSION   XM_032607817
VERSION     XM_032607817.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2926
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 10 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741379"
     CDS             183..1973
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463708.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    744..1697
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(753..755,807..809,819..821,837..842,879..884,
                     942..944,954..956,972..977,1020..1025,1077..1079,
                     1092..1094,1110..1115,1161..1163,1224..1226,1236..1238,
                     1254..1259,1314..1319,1389..1391,1401..1403,1419..1424,
                     1467..1472,1530..1532,1545..1547,1563..1568,1602..1607,
                     1662..1664,1674..1676,1692..1697)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    771..881
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    897..1022
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1035..1160
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1182..1328
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1347..1466
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1488..1601
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1620..1694
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 tgcgtccttc gaggagggtt gggagcggag agctcgcgcg accgctcgct cccccagtct
       61 tctccagcac atcgtcgcaa acggggccgg aaagcgtggc ggcgcaggcg caagcgcaga
      121 gagcggaggc ggtggtggtg gcggccgctg gccagtgctg gctgcagtaa acatcattca
      181 agatgtccag caaagggagc agcacagatg gcaaaacaga cttagctaat ggaagcctgt
      241 ctagcagtcc agaggagatg tctggtgctg aggaggggag ggagacatcc tcaggcattg
      301 aagtggaggc ctcagacctg agcttgagct tgaccgggga tgatggtggc cccaaccgca
      361 ccagcacaga aagtcgaggc acagatacag agagctcagg tgaagacaag gactctgaca
      421 gcatggagga cactggccat tactccatca atgatgaaaa ccaagtccat gaccgctcag
      481 aggaagaaga ggatgaagaa gaggaggaag aagagcatcc tcgtcgtcgt gtacagcgca
      541 agcgggcaaa ccgtgaccag gactcatcag atgatgagcg ggccctggag gactgggtgt
      601 cctcggagac ctcagtcctg ccccgacctc gctggcaagc ccttcctgcc cttcgggagc
      661 gggagctggg ttcaagtgcc cgctttgtgt atgaggcttg tggggcaaga gtctttgtgc
      721 agcgtttccg cctgcagcat gggcttgagg gccatactgg ttgtgttaat accttgcact
      781 ttaaccagcg cggcacctgg ctggccagtg gcagcgatga cctgaaagtg gtggtttggg
      841 actgggtacg gcgacagcca gtgttggact ttgagagcgg ccacaaaagc aatgtcttcc
      901 aggccaagtt ccttcctaac agtggcgatt ccaccctggc catgtgtgcc cgtgatgggc
      961 aggttcgggt agcagagttg tctgctacac agtgctgcaa gaatacaaag cgtgtggccc
     1021 agcacaaggg agcatcccac aagttggccc tggaaccaga ctctccctgt acgttcctat
     1081 ctgcaggtga agatgcagtt gtcttcacca ttgacctcag acaagaccgg ccagcttcga
     1141 aactggtggt gacaaaagaa aaggagaaga aggtggggct gtatacaatc tatgtgaatc
     1201 ctgccaatac ccaccagttt gcagtgggtg gacgagatca gtttgtaagg atttatgacc
     1261 agaggaaaat tgatgagaat gaaaacaatg gagtactcaa gaaattctgc cctcatcacc
     1321 tggtgaacag tgagtccaaa gcaaacatca cctgtcttgt gtacagccac gacggcacag
     1381 agctcctggc cagttacaat gatgaagaca tttacctctt caactcctct cacagtgatg
     1441 gggcccagta tattaagaga tataagggcc acagaaataa cgccacagta aaaggcgtca
     1501 atttctatgg ccccaagagt gagtttgtgg tgagcggtag tgactgcggg cacatcttcc
     1561 tctgggagaa atcatcctgc cagatcattc agttcatgga gggggacaag ggaggcgtgg
     1621 taaactgtct tgagccccac cctcatctgc ctgtgctggc aaccagtggc ctagaccatg
     1681 atgtcaagat ctgggcaccc acagctgaaa cttccactga acttacaggg ttaaaggatg
     1741 tgattaagaa gaacaagcgg gaacgggatg aagatagctt acaccacacc gacctatttg
     1801 atagccacat gctctggttc ctcatgcatc acctgagaca aagacgccat caccggcgct
     1861 ggcgagaacc tggggttggg gccacagacg cagactcgga tgagtctccc agctcctcag
     1921 atacatcgga cgaggaggag ggccctgacc gggtgcagtg catgccatcc tgaggcctcg
     1981 tacccaggag gggcaggctg gggctgccaa cccgatcctg cctgggcagc cctttcctgt
     2041 cccgggctct aacattcagc agaaacgcac tttggacttt tttgctttag atttaaaaag
     2101 aaaagaaaag aaaaaaaaaa agacatccca ggaggacaag ccagagggga gcaaacctac
     2161 agagcatcta gaagtgggaa ttgagccctg gaatggggtt ccatggagag gtgcatagga
     2221 cttggcagaa atggcctctc cccaaagcct ttttttttgg gggagggggg agcctatttt
     2281 gttaactggt ttggggtagg gaatggggtt tccttttctt tgatctccct tgtttcttgg
     2341 tggggggtgg ggggataact ggctgttcag taccaagggg ccagactggg gtggtagaaa
     2401 tgccactctc tctttggttt aggtttttga ctttattttc tttatttttt aaaattctat
     2461 gacagttgca ttgttttttc ttccccctga gcaaccaacc ccatcccagg atcctgtttt
     2521 tctggggagt ccttagagcc cctaaccatc ccacactctt cactttcttt tccaccccat
     2581 tcattctctg tacttatcac agtgttttgc acttgattat gtatccttca ctctcttctc
     2641 ttcatcccat caccccctca gtaggtctgg tgagggaggt tggggggagg tgggaggagg
     2701 gacagaagtg gaagaatagg aaggtggtta cctcttctgt tacttaaaaa aaaaaagttg
     2761 tttggtggca gcaatctccc tgtccctatc actgttagag gcctaatttt atatctataa
     2821 atatattaaa aagcaagtca aaattggatg tatcatgtta aaattattgt tgaagtttaa
     2881 atacctatat attctctatg actgcaataa agggacttac aggaga
//
LOCUS       XM_032607826            3124 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X14, mRNA.
ACCESSION   XM_032607826
VERSION     XM_032607826.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3124
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 9 long SRA reads, 18
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116741379"
     CDS             381..2171
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463717.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    942..1895
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(951..953,1005..1007,1017..1019,1035..1040,
                     1077..1082,1140..1142,1152..1154,1170..1175,1218..1223,
                     1275..1277,1290..1292,1308..1313,1359..1361,1422..1424,
                     1434..1436,1452..1457,1512..1517,1587..1589,1599..1601,
                     1617..1622,1665..1670,1728..1730,1743..1745,1761..1766,
                     1800..1805,1860..1862,1872..1874,1890..1895)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    969..1079
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1095..1220
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1233..1358
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1380..1526
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1545..1664
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1686..1799
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1818..1892
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 tgcgtccttc gaggagggtt gggagcggag agctcgcgcg accgctcgct cccccagtct
       61 tctccagcac atcgtcgcaa acggggccgg aaagcgtggc ggcgcaggcg caagcgcaga
      121 gagcggaggc ggtggtggtg gcggccgctg gccagttcct tcagtgaatc tacagaccta
      181 ttttctcagg agctcagcct ggccctactt cagtgataaa ggaggaaagt ttaaaacaat
      241 actggcattt caaaagcaaa cggactccaa tagaagacgt tctatagaag tatgccctgt
      301 tgtgggagac tgagatcttc agagtttcat ggtctaggtc ctgtattcta tcaggctggc
      361 tgcagtaaac atcattcaag atgtccagca aagggagcag cacagatggc aaaacagact
      421 tagctaatgg aagcctgtct agcagtccag aggagatgtc tggtgctgag gaggggaggg
      481 agacatcctc aggcattgaa gtggaggcct cagacctgag cttgagcttg accggggatg
      541 atggtggccc caaccgcacc agcacagaaa gtcgaggcac agatacagag agctcaggtg
      601 aagacaagga ctctgacagc atggaggaca ctggccatta ctccatcaat gatgaaaacc
      661 aagtccatga ccgctcagag gaagaagagg atgaagaaga ggaggaagaa gagcatcctc
      721 gtcgtcgtgt acagcgcaag cgggcaaacc gtgaccagga ctcatcagat gatgagcggg
      781 ccctggagga ctgggtgtcc tcggagacct cagtcctgcc ccgacctcgc tggcaagccc
      841 ttcctgccct tcgggagcgg gagctgggtt caagtgcccg ctttgtgtat gaggcttgtg
      901 gggcaagagt ctttgtgcag cgtttccgcc tgcagcatgg gcttgagggc catactggtt
      961 gtgttaatac cttgcacttt aaccagcgcg gcacctggct ggccagtggc agcgatgacc
     1021 tgaaagtggt ggtttgggac tgggtacggc gacagccagt gttggacttt gagagcggcc
     1081 acaaaagcaa tgtcttccag gccaagttcc ttcctaacag tggcgattcc accctggcca
     1141 tgtgtgcccg tgatgggcag gttcgggtag cagagttgtc tgctacacag tgctgcaaga
     1201 atacaaagcg tgtggcccag cacaagggag catcccacaa gttggccctg gaaccagact
     1261 ctccctgtac gttcctatct gcaggtgaag atgcagttgt cttcaccatt gacctcagac
     1321 aagaccggcc agcttcgaaa ctggtggtga caaaagaaaa ggagaagaag gtggggctgt
     1381 atacaatcta tgtgaatcct gccaataccc accagtttgc agtgggtgga cgagatcagt
     1441 ttgtaaggat ttatgaccag aggaaaattg atgagaatga aaacaatgga gtactcaaga
     1501 aattctgccc tcatcacctg gtgaacagtg agtccaaagc aaacatcacc tgtcttgtgt
     1561 acagccacga cggcacagag ctcctggcca gttacaatga tgaagacatt tacctcttca
     1621 actcctctca cagtgatggg gcccagtata ttaagagata taagggccac agaaataacg
     1681 ccacagtaaa aggcgtcaat ttctatggcc ccaagagtga gtttgtggtg agcggtagtg
     1741 actgcgggca catcttcctc tgggagaaat catcctgcca gatcattcag ttcatggagg
     1801 gggacaaggg aggcgtggta aactgtcttg agccccaccc tcatctgcct gtgctggcaa
     1861 ccagtggcct agaccatgat gtcaagatct gggcacccac agctgaaact tccactgaac
     1921 ttacagggtt aaaggatgtg attaagaaga acaagcggga acgggatgaa gatagcttac
     1981 accacaccga cctatttgat agccacatgc tctggttcct catgcatcac ctgagacaaa
     2041 gacgccatca ccggcgctgg cgagaacctg gggttggggc cacagacgca gactcggatg
     2101 agtctcccag ctcctcagat acatcggacg aggaggaggg ccctgaccgg gtgcagtgca
     2161 tgccatcctg aggcctcgta cccaggaggg gcaggctggg gctgccaacc cgatcctgcc
     2221 tgggcagccc tttcctgtcc cgggctctaa cattcagcag aaacgcactt tggacttttt
     2281 tgctttagat ttaaaaagaa aagaaaagaa aaaaaaaaag acatcccagg aggacaagcc
     2341 agaggggagc aaacctacag agcatctaga agtgggaatt gagccctgga atggggttcc
     2401 atggagaggt gcataggact tggcagaaat ggcctctccc caaagccttt ttttttgggg
     2461 gaggggggag cctattttgt taactggttt ggggtaggga atggggtttc cttttctttg
     2521 atctcccttg tttcttggtg gggggtgggg ggataactgg ctgttcagta ccaaggggcc
     2581 agactggggt ggtagaaatg ccactctctc tttggtttag gtttttgact ttattttctt
     2641 tattttttaa aattctatga cagttgcatt gttttttctt ccccctgagc aaccaacccc
     2701 atcccaggat cctgtttttc tggggagtcc ttagagcccc taaccatccc acactcttca
     2761 ctttcttttc caccccattc attctctgta cttatcacag tgttttgcac ttgattatgt
     2821 atccttcact ctcttctctt catcccatca ccccctcagt aggtctggtg agggaggttg
     2881 gggggaggtg ggaggaggga cagaagtgga agaataggaa ggtggttacc tcttctgtta
     2941 cttaaaaaaa aaaagttgtt tggtggcagc aatctccctg tccctatcac tgttagaggc
     3001 ctaattttat atctataaat atattaaaaa gcaagtcaaa attggatgta tcatgttaaa
     3061 attattgttg aagtttaaat acctatatat tctctatgac tgcaataaag ggacttacag
     3121 gaga
//
LOCUS       XM_032607836            3128 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDB1 and CUL4 associated factor 8
            (DCAF8), transcript variant X15, mRNA.
ACCESSION   XM_032607836
VERSION     XM_032607836.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3128
                     /gene="DCAF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 18
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116741379"
     CDS             385..2175
                     /gene="DCAF8"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 8"
                     /protein_id="XP_032463727.1"
                     /db_xref="GeneID:116741379"
                     /translation="MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEAS
                     DLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEE
                     EDEEEEEEEHPRRRVQRKRANRDQDSSDDERALEDWVSSETSVLPRPRWQALPALRER
                     ELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVV
                     WDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTK
                     RVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLY
                     TIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCL
                     VYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV
                     SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA
                     ETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVG
                     ATDADSDESPSSSDTSDEEEGPDRVQCMPS"
     misc_feature    946..1899
                     /gene="DCAF8"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(955..957,1009..1011,1021..1023,1039..1044,
                     1081..1086,1144..1146,1156..1158,1174..1179,1222..1227,
                     1279..1281,1294..1296,1312..1317,1363..1365,1426..1428,
                     1438..1440,1456..1461,1516..1521,1591..1593,1603..1605,
                     1621..1626,1669..1674,1732..1734,1747..1749,1765..1770,
                     1804..1809,1864..1866,1876..1878,1894..1899)
                     /gene="DCAF8"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    973..1083
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1099..1224
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1237..1362
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1384..1530
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1549..1668
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1690..1803
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1822..1896
                     /gene="DCAF8"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gagagcggag gcggtggtgg tggcggccgc tggccagtgt aagatggcgg cggcggtggt
       61 ggcggcagtg gacggggcgg ctgggcgtgg aagagtcgga gcagcctctg gcagaaggat
      121 gacccaagac aggaagcagg ctgctgagcc tcgccggctc ccgtgcttgt aactgcccca
      181 gccggacacc ccccccttga cctacccggt ccgtgtctcg ttccggcttg gcctgccccc
      241 ctctcccctg gcccactcct cttcaagata ggtttgactc ctttcccaag ctcccagggc
      301 tcagggcttc ttcccctgac ctgagtcacc gccgggagga ttgactgcct tccctcaggc
      361 tggctgcagt aaacatcatt caagatgtcc agcaaaggga gcagcacaga tggcaaaaca
      421 gacttagcta atggaagcct gtctagcagt ccagaggaga tgtctggtgc tgaggagggg
      481 agggagacat cctcaggcat tgaagtggag gcctcagacc tgagcttgag cttgaccggg
      541 gatgatggtg gccccaaccg caccagcaca gaaagtcgag gcacagatac agagagctca
      601 ggtgaagaca aggactctga cagcatggag gacactggcc attactccat caatgatgaa
      661 aaccaagtcc atgaccgctc agaggaagaa gaggatgaag aagaggagga agaagagcat
      721 cctcgtcgtc gtgtacagcg caagcgggca aaccgtgacc aggactcatc agatgatgag
      781 cgggccctgg aggactgggt gtcctcggag acctcagtcc tgccccgacc tcgctggcaa
      841 gcccttcctg cccttcggga gcgggagctg ggttcaagtg cccgctttgt gtatgaggct
      901 tgtggggcaa gagtctttgt gcagcgtttc cgcctgcagc atgggcttga gggccatact
      961 ggttgtgtta ataccttgca ctttaaccag cgcggcacct ggctggccag tggcagcgat
     1021 gacctgaaag tggtggtttg ggactgggta cggcgacagc cagtgttgga ctttgagagc
     1081 ggccacaaaa gcaatgtctt ccaggccaag ttccttccta acagtggcga ttccaccctg
     1141 gccatgtgtg cccgtgatgg gcaggttcgg gtagcagagt tgtctgctac acagtgctgc
     1201 aagaatacaa agcgtgtggc ccagcacaag ggagcatccc acaagttggc cctggaacca
     1261 gactctccct gtacgttcct atctgcaggt gaagatgcag ttgtcttcac cattgacctc
     1321 agacaagacc ggccagcttc gaaactggtg gtgacaaaag aaaaggagaa gaaggtgggg
     1381 ctgtatacaa tctatgtgaa tcctgccaat acccaccagt ttgcagtggg tggacgagat
     1441 cagtttgtaa ggatttatga ccagaggaaa attgatgaga atgaaaacaa tggagtactc
     1501 aagaaattct gccctcatca cctggtgaac agtgagtcca aagcaaacat cacctgtctt
     1561 gtgtacagcc acgacggcac agagctcctg gccagttaca atgatgaaga catttacctc
     1621 ttcaactcct ctcacagtga tggggcccag tatattaaga gatataaggg ccacagaaat
     1681 aacgccacag taaaaggcgt caatttctat ggccccaaga gtgagtttgt ggtgagcggt
     1741 agtgactgcg ggcacatctt cctctgggag aaatcatcct gccagatcat tcagttcatg
     1801 gagggggaca agggaggcgt ggtaaactgt cttgagcccc accctcatct gcctgtgctg
     1861 gcaaccagtg gcctagacca tgatgtcaag atctgggcac ccacagctga aacttccact
     1921 gaacttacag ggttaaagga tgtgattaag aagaacaagc gggaacggga tgaagatagc
     1981 ttacaccaca ccgacctatt tgatagccac atgctctggt tcctcatgca tcacctgaga
     2041 caaagacgcc atcaccggcg ctggcgagaa cctggggttg gggccacaga cgcagactcg
     2101 gatgagtctc ccagctcctc agatacatcg gacgaggagg agggccctga ccgggtgcag
     2161 tgcatgccat cctgaggcct cgtacccagg aggggcaggc tggggctgcc aacccgatcc
     2221 tgcctgggca gccctttcct gtcccgggct ctaacattca gcagaaacgc actttggact
     2281 tttttgcttt agatttaaaa agaaaagaaa agaaaaaaaa aaagacatcc caggaggaca
     2341 agccagaggg gagcaaacct acagagcatc tagaagtggg aattgagccc tggaatgggg
     2401 ttccatggag aggtgcatag gacttggcag aaatggcctc tccccaaagc cttttttttt
     2461 gggggagggg ggagcctatt ttgttaactg gtttggggta gggaatgggg tttccttttc
     2521 tttgatctcc cttgtttctt ggtggggggt ggggggataa ctggctgttc agtaccaagg
     2581 ggccagactg gggtggtaga aatgccactc tctctttggt ttaggttttt gactttattt
     2641 tctttatttt ttaaaattct atgacagttg cattgttttt tcttccccct gagcaaccaa
     2701 ccccatccca ggatcctgtt tttctgggga gtccttagag cccctaacca tcccacactc
     2761 ttcactttct tttccacccc attcattctc tgtacttatc acagtgtttt gcacttgatt
     2821 atgtatcctt cactctcttc tcttcatccc atcaccccct cagtaggtct ggtgagggag
     2881 gttgggggga ggtgggagga gggacagaag tggaagaata ggaaggtggt tacctcttct
     2941 gttacttaaa aaaaaaaagt tgtttggtgg cagcaatctc cctgtcccta tcactgttag
     3001 aggcctaatt ttatatctat aaatatatta aaaagcaagt caaaattgga tgtatcatgt
     3061 taaaattatt gttgaagttt aaatacctat atattctcta tgactgcaat aaagggactt
     3121 acaggaga
//
LOCUS       XM_032607850            2284 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peroxisomal biogenesis factor 19 (PEX19),
            mRNA.
ACCESSION   XM_032607850
VERSION     XM_032607850.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2284
                     /gene="PEX19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741409"
     CDS             21..920
                     /gene="PEX19"
                     /codon_start=1
                     /product="peroxisomal biogenesis factor 19"
                     /protein_id="XP_032463741.1"
                     /db_xref="GeneID:116741409"
                     /translation="MAAVEEDGGVGAEADRELEELLESALDDFDKAKPSPAPPPTTTA
                     PDASGSQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLV
                     EQFQKLSEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAMEGL
                     GMDEGDGEGTILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQTHRESLPPEQFEKY
                     QEQHSVMGKICEQFEAETPTDSEATQKARFEVVLDLMQQLQDLGHPPKELAGEMPPGL
                     NFDLDALNLSGPPGANGEQCLIM"
     misc_feature    240..917
                     /gene="PEX19"
                     /note="Pex19 protein family; Region: Pex19; pfam04614"
                     /db_xref="CDD:461367"
ORIGIN      
        1 ggcacggcgg aggtggcaag atggccgcgg ttgaggagga tggtggtgtt ggggctgaag
       61 ccgaccggga attggaagag cttctggaaa gtgctcttga tgattttgat aaggccaaac
      121 cctcaccagc accccctcct accaccacgg cccctgatgc ttcggggtcc cagaagagat
      181 cgccgggaga cactgccaaa gatgccctct ttgcctccca agagaagttt ttccaggaac
      241 tgtttgacag cgagctggct tcccaagcca ctgcagagtt cgagaaagca atgaaggagt
      301 tggctgagga agagccccac ctggtagagc agttccaaaa gctctcagag gctgctggga
      361 gagtaggtag tgatgcgact tcccaacaag aattcacttc ttgcctaaag gagacattaa
      421 gtggactagc caagaatgcc actgaccttc agaactctgg catgtcagaa gaggagctga
      481 ccaaggccat ggaagggctg ggcatggacg aaggagatgg ggaagggacc atcctcccca
      541 tcatgcagag tatcatgcag aacctcctgt ccaaggatgt gctgtaccca tcactgaagg
      601 agatcacaga aaagtatcca gaatggttgc agactcaccg agaatctcta cctccagagc
      661 agtttgaaaa atatcaggaa caacacagtg tcatgggcaa aatatgtgag cagtttgagg
      721 cagaaacccc cacagatagt gaggccactc aaaaggctcg ttttgaggtg gtgctggatc
      781 tcatgcagca gctacaggat ttgggccatc ctccaaaaga gcttgctggg gagatgcctc
      841 ctggcctcaa ctttgacctg gatgccctca atctctcggg cccaccaggt gccaatggcg
      901 aacagtgtct gatcatgtga aacacaacat gcttccttcc ctgattccca gctgtggggg
      961 aacgtctgga gtcagcagaa ccactgggag ctgaggcagg agtgtcgtct acaggagtgg
     1021 tctgcccact gccatctgtc atcccaccca agattgtgcc ataccagctg aggctttttt
     1081 tctgtctttc taggaataag gcctgttctg cagatcattt ctgtgaaccc tttccattgt
     1141 ggtttctgct gctagcaaag gcccagctac ctaccaggtg aaggaaggtg tcccttttgg
     1201 ggcatgcacc ttctttcctc tcccaaaata atgttataca gggccacact gagttcactt
     1261 ttgtacccag ggtctttgtg ccttgtgttt actccctgtc ttggacctgg ggagcaggga
     1321 cagagtccta ggactctata tttctatagt tttcttgggc agcacctgtg ggaatgaatg
     1381 gggagaaact tagcctaggc tgggggttta ggtctgtcac cacaccctct tgccttcaga
     1441 ctgttctgaa ttctctgaag ggaaagtaag tgggggggct tttgcatcta aaaatgctac
     1501 tctttcacag taggttgaaa gagaagccct gggattctcc tccttccagg tacagagtcc
     1561 tcaattgcct gttccagcct gagaactcaa gtagctgccc tgttctttct ataatgctat
     1621 gtgatctggg tgaactcagc ccttgacctt cctttatccc ctgcctctcc tctcatctct
     1681 ctattttaaa tacctcttta ttccaaccct tctctgagcc caaactgtga caaagaaggg
     1741 cccatcctgt ttcccctcat ctagtccatc caccaccctc actggccccc ctatctccct
     1801 ggcaaatgta tataattata gtgtcaggtc taggaaatga attactgttc ttccccagat
     1861 acattttggc ttatttgaga catctgattc ctttgaatcc tgttcattga ttcagggagg
     1921 tagcttggga aagggggggt gggatgcagc ctggatcctt tttcctgact aataaatatt
     1981 ctgagtgagg gattgagcct gtttttcatc caagtctttt cctaatcttc ctcagcttct
     2041 ctaagctgcc ctgtgaggaa tgttagcata acattgcatt actgggttct accaccactt
     2101 cccttcccca gctcaatctg cacctcagtt ggcaaaggag actgaatggc catctttcct
     2161 cattttctcc gaatatttca atttgggaag cccttcgatt ggtattgtat tttaacattt
     2221 cacagtatta ttattaatgt tagtaatata ttgttaacat gtttagtaaa ttatttttct
     2281 ttga
//
LOCUS       XM_032607865            2578 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proliferation and apoptosis adaptor
            protein 15 (PEA15), transcript variant X1, mRNA.
ACCESSION   XM_032607865
VERSION     XM_032607865.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2578
                     /gene="PEA15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 22 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741412"
     CDS             180..572
                     /gene="PEA15"
                     /codon_start=1
                     /product="astrocytic phosphoprotein PEA-15"
                     /protein_id="XP_032463756.1"
                     /db_xref="GeneID:116741412"
                     /translation="MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSA
                     WFSFLESHNKLDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRI
                     PSAKKYKDIIRQPSEEEIIKLAPPPKKA"
     misc_feature    183..434
                     /gene="PEA15"
                     /note="Death Effector Domain of Astrocyte phosphoprotein
                     PEA-15; Region: DED_PEA15; cd08338"
                     /db_xref="CDD:260045"
     misc_feature    order(219..221,234..236,381..386,390..401,405..410,
                     417..419)
                     /gene="PEA15"
                     /note="ERK2 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:260045"
ORIGIN      
        1 tgggctcggg ctctggctcc gcgggcggaa gaggcggcgg cggcggcagc agaagcggcg
       61 gcggcggcgg cggcggcggc ggcggcggcg gcgggagccg aggaggaggt tccggacgct
      121 gctcaggaac cggggacgcc ggagtgcccg ctccccgagc gctcagcccc ggaggcgtca
      181 tggccgagta cgggaccctc ctccaggacc tgaccaacaa catcaccctt gaagatctgg
      241 aacagctcaa gtcagcctgc aaggaggaca tccccagtga gaagagcgag gagatcacta
      301 ctggcagtgc ctggtttagc ttcctggaga gccacaacaa gctggacaaa gacaacctct
      361 cttatatcga gcacatcttt gagatctccc gccgtcctga cctactcact atggtggttg
      421 actacagaac ccgtgttctg aagatctctg aggaagatga gctggacacc aagctaaccc
      481 gtatccccag tgccaagaag tacaaagaca ttatccggca gccctctgag gaagagatca
      541 tcaaattggc tcctccaccg aagaaagcct gagcaagggg gaggaagagg aggaaggttg
      601 gaccttcatc agaccattct cttcccccat cctccagggg aggggacaag ggcatccccc
      661 ccccatctac ccacttacta acctggtcct aaccccctta ctgtgcgcgt gtgtgtgcgt
      721 gtgcgcacgc tctggctgtc tgtctgtatg tctagctcat ctagttcctc ctccttgtga
      781 ggggatgggg gtcaggggct gggggtgggg gagctcagtt tccccactct agggggggtt
      841 gggggctatt tctatgcaaa tagaaatggg cacattcctc ctacttccct ttcctccact
      901 ctccccccac ctctctaaag tgtgggagca gaaaagggcc tgtattttcc tacaatgagg
      961 cagcgaggta ggagtgaggc atgggagagg tgggtgaatc taatgaaaag cagtgagagg
     1021 gaagatgaag aggctaccca acccccacct ggaaggggca aagaaaagcc agagttgtgt
     1081 ttggtacccc aaagctggac tggctgagga gtccagtttc cagtagttcc tcaggttgga
     1141 gggcctgggc accagcaggt ccctttttgc tcccctctca tgggcctacg gtgggtatga
     1201 gccagggacc taaagagaga ggatcactgg atccttccct ggccccaaag ttcaaacccc
     1261 atggagaacc cagcattaga taccccccac ccacctctgc tctggagaga ctgtgctggg
     1321 aacacacccc atcactgagc ctgagtgggg atgaaggcag agaggagttc cctgttccac
     1381 tcctttattc ctactcagac tgttgcacag gagtcccctg agcctaggga ggttggggaa
     1441 tcgagatcct taggttttaa ctccaatcct gctcccactt acagagtccc aacgtggtta
     1501 tcgcaggcaa ccttccctct ctccatgatc tagaaccccc tctcccccaa gccagaaaga
     1561 agggaagaag ctaactacag tgttttccgt tgcaccgatc cccaattcag tccaggaggg
     1621 gactcggtaa cccctctccc tcaatatcct ggcaccttgg gcttatgaac ccctcctagc
     1681 caaatcacta gagtacagtg accccagcct cctgcctgtc ccaagatagc catccccacc
     1741 ctgaccgtgc taactgtgtg tacatatata ttctacatat atgtatatta aacccgcact
     1801 gccatgtctg cccttttttg tggtgtctgg cattaactta ttgtctaggc caggacgggg
     1861 gtggaaggga aatgccacag tgaagggagt ggcagagtca aattgctaca tagtcaaaac
     1921 aaaaaaaact tttttaaact ttaaattcac atgcaatctc aagaggctat ttagagaaag
     1981 tttaagctag gagcttctag gatgtgggag caaaacttta gtggagggga gagctggcta
     2041 ctggaagagg gaagaagcca gactggttgg agagcaccct ctaatcctag cctagcccag
     2101 cccaacctgc ctgtcccctc tggccactgc tgcggacacc tgccttaaca catacacctc
     2161 gagtactcca cagttttgcc ttaaaggacc ttcccaagtt tccccagtcc tgtctggctt
     2221 ctccctcaag gagagagaga tacttgtaga attgggaggg ggataagagc aggaattatc
     2281 cttccaagcc aggatatgtt atgtgagaac aagtctgaga aagaaagggg gtggagggag
     2341 ggaatatatt ataaagagcc ttcctttgaa gagagaagag gatgagacgg gagaagggag
     2401 acagggtcat tttcagcgga gtctagcaat ttctctgtaa ggcaaaataa tctaaaacga
     2461 ctaacctgcc ctcccgcccc ctatactgct gtgagattgc ccctatcctg tgctcctctg
     2521 tctgcagtgt gcacggcctt gttctaaccc tggaataaag gtgattgatt gtactgta
//
LOCUS       XM_032607875            2617 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proliferation and apoptosis adaptor
            protein 15 (PEA15), transcript variant X2, mRNA.
ACCESSION   XM_032607875
VERSION     XM_032607875.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2617
                     /gene="PEA15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741412"
     CDS             219..611
                     /gene="PEA15"
                     /codon_start=1
                     /product="astrocytic phosphoprotein PEA-15"
                     /protein_id="XP_032463766.1"
                     /db_xref="GeneID:116741412"
                     /translation="MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSA
                     WFSFLESHNKLDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRI
                     PSAKKYKDIIRQPSEEEIIKLAPPPKKA"
     misc_feature    222..473
                     /gene="PEA15"
                     /note="Death Effector Domain of Astrocyte phosphoprotein
                     PEA-15; Region: DED_PEA15; cd08338"
                     /db_xref="CDD:260045"
     misc_feature    order(258..260,273..275,420..425,429..440,444..449,
                     456..458)
                     /gene="PEA15"
                     /note="ERK2 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:260045"
ORIGIN      
        1 ctggtgttcc ctgggcagcc tctgcactgt tccagaggtc aggaggactc ttcagagctg
       61 tgagggcagg agacttctct ataggcccta tggaattcta aatcttgggt gagaaaagca
      121 acatggaggg tgaaggagcc aagcttctgc caagccccac ctgccatggc cagactacaa
      181 ctggacaatg gttgaccagg aaagcttgag aaccaatcat ggccgagtac gggaccctcc
      241 tccaggacct gaccaacaac atcacccttg aagatctgga acagctcaag tcagcctgca
      301 aggaggacat ccccagtgag aagagcgagg agatcactac tggcagtgcc tggtttagct
      361 tcctggagag ccacaacaag ctggacaaag acaacctctc ttatatcgag cacatctttg
      421 agatctcccg ccgtcctgac ctactcacta tggtggttga ctacagaacc cgtgttctga
      481 agatctctga ggaagatgag ctggacacca agctaacccg tatccccagt gccaagaagt
      541 acaaagacat tatccggcag ccctctgagg aagagatcat caaattggct cctccaccga
      601 agaaagcctg agcaaggggg aggaagagga ggaaggttgg accttcatca gaccattctc
      661 ttcccccatc ctccagggga ggggacaagg gcatcccccc cccatctacc cacttactaa
      721 cctggtccta acccccttac tgtgcgcgtg tgtgtgcgtg tgcgcacgct ctggctgtct
      781 gtctgtatgt ctagctcatc tagttcctcc tccttgtgag gggatggggg tcaggggctg
      841 ggggtggggg agctcagttt ccccactcta gggggggttg ggggctattt ctatgcaaat
      901 agaaatgggc acattcctcc tacttccctt tcctccactc tccccccacc tctctaaagt
      961 gtgggagcag aaaagggcct gtattttcct acaatgaggc agcgaggtag gagtgaggca
     1021 tgggagaggt gggtgaatct aatgaaaagc agtgagaggg aagatgaaga ggctacccaa
     1081 cccccacctg gaaggggcaa agaaaagcca gagttgtgtt tggtacccca aagctggact
     1141 ggctgaggag tccagtttcc agtagttcct caggttggag ggcctgggca ccagcaggtc
     1201 cctttttgct cccctctcat gggcctacgg tgggtatgag ccagggacct aaagagagag
     1261 gatcactgga tccttccctg gccccaaagt tcaaacccca tggagaaccc agcattagat
     1321 accccccacc cacctctgct ctggagagac tgtgctggga acacacccca tcactgagcc
     1381 tgagtgggga tgaaggcaga gaggagttcc ctgttccact cctttattcc tactcagact
     1441 gttgcacagg agtcccctga gcctagggag gttggggaat cgagatcctt aggttttaac
     1501 tccaatcctg ctcccactta cagagtccca acgtggttat cgcaggcaac cttccctctc
     1561 tccatgatct agaaccccct ctcccccaag ccagaaagaa gggaagaagc taactacagt
     1621 gttttccgtt gcaccgatcc ccaattcagt ccaggagggg actcggtaac ccctctccct
     1681 caatatcctg gcaccttggg cttatgaacc cctcctagcc aaatcactag agtacagtga
     1741 ccccagcctc ctgcctgtcc caagatagcc atccccaccc tgaccgtgct aactgtgtgt
     1801 acatatatat tctacatata tgtatattaa acccgcactg ccatgtctgc ccttttttgt
     1861 ggtgtctggc attaacttat tgtctaggcc aggacggggg tggaagggaa atgccacagt
     1921 gaagggagtg gcagagtcaa attgctacat agtcaaaaca aaaaaaactt ttttaaactt
     1981 taaattcaca tgcaatctca agaggctatt tagagaaagt ttaagctagg agcttctagg
     2041 atgtgggagc aaaactttag tggaggggag agctggctac tggaagaggg aagaagccag
     2101 actggttgga gagcaccctc taatcctagc ctagcccagc ccaacctgcc tgtcccctct
     2161 ggccactgct gcggacacct gccttaacac atacacctcg agtactccac agttttgcct
     2221 taaaggacct tcccaagttt ccccagtcct gtctggcttc tccctcaagg agagagagat
     2281 acttgtagaa ttgggagggg gataagagca ggaattatcc ttccaagcca ggatatgtta
     2341 tgtgagaaca agtctgagaa agaaaggggg tggagggagg gaatatatta taaagagcct
     2401 tcctttgaag agagaagagg atgagacggg agaagggaga cagggtcatt ttcagcggag
     2461 tctagcaatt tctctgtaag gcaaaataat ctaaaacgac taacctgccc tcccgccccc
     2521 tatactgctg tgagattgcc cctatcctgt gctcctctgt ctgcagtgtg cacggccttg
     2581 ttctaaccct ggaataaagg tgattgattg tactgta
//
LOCUS       XM_032607889            5065 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cingulin (CGN), transcript variant X1,
            mRNA.
ACCESSION   XM_032607889
VERSION     XM_032607889.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5065
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5065
                     /gene="CGN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741416"
     CDS             100..3684
                     /gene="CGN"
                     /codon_start=1
                     /product="cingulin isoform X1"
                     /protein_id="XP_032463780.1"
                     /db_xref="GeneID:116741416"
                     /translation="MEQVSTMAEPRGPVDHGVQIRFITEPVCDAEMGTLRRGGRRPAK
                     DARANTYGVAVRVQGIAGQPFVVLNSGEKGGDSFGVQIKGANNRGAPGALSSDSELPE
                     SPYSQAKEFPARSQGSTSDEEPGAHWNGRLLRSQSQASLAGPAPMGPSNRSTSLLELA
                     HQGAYLGSTIDTAPLSSVDSLINKFDSHHGGQARGRTGRRTRMLPPEQRKRSQSLDSR
                     LPRDTVEERERWSPNRWTPSTKHDQHTGSLKQSAQSCLGGFSHSRQTQDWVLQSFEEP
                     RGRAQDPPMLQFKSTPDLLRDQQEAVPPGSVDHVKATIYGILRDGSSESETSVRRKVS
                     LLLEQMQPLVMVSSGSTKAGQGELTQKVEELQKKLDEEVKKRQKLEPFRVGLERQLEE
                     KAEECSRLQELLERRNGEAQQSTKELQNMKLLLDQGEMVRHGLEMQVMELQDKLKQAQ
                     SPEPAKEVLMKDLVETRELLEEVLEGKQRVEEQLRLRERELTALKGALKEEVASRDQE
                     VEHVRQQYQRDAEQLRRSMQDATQDYAALEAERQKMLALVRELQRELEETSEETGHWQ
                     SMFQKNKEELRATKQELLQLRMEKEEMEEELGEKIEVLQRELGQARAGAGDTRQVEEL
                     KKELRRTQEELKELQAEKQSQEVTGRHRERELEKQLRVEAERGRGLEQQNLQLQKTLH
                     QLRQDCEEASKAQMAAEAEMAVLGQRRTAVETTLRETQEENDDFRRRILGLEQQLKEA
                     RGLAEGGEVAEARLRDKVQRLEAEKQRLEEALNTAQEEEGSLTAAKRALEARLEEAQR
                     GLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLDRTVDRLNKELEQIGDDS
                     KQALQQLQAQLEDYKEKARREVADAQRQAKEWASEAEKTAGGLSRLQDETQRLRQGLQ
                     ASQAERDSARLDKELLVQRLQGLEQEAENKKRSQDDRSRQLKGLEEKVSRLEVELDEE
                     RSTVELLTERMNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKSRLASSEG
                     FQKPSASLSQLESQNRELQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVN
                     DQKDQLSLRVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEVNEQLQARIKVLEKD
                     SWRKASRSAAESTLQHEGLSSDEEFDSVYDPSSIASLLTESNLQTSSC"
     misc_feature    1183..3507
                     /gene="CGN"
                     /note="Myosin tail; Region: Myosin_tail_1; pfam01576"
                     /db_xref="CDD:460256"
ORIGIN      
        1 gggacagagg gggagggccc gggagccgcg cgtgcagctc tacccgagcc cgagcccgag
       61 cccgggaacg ccgagcccgg ctggggaccc ctcctaccca tggagcaggt gtccaccatg
      121 gccgagcccc ggggccctgt agaccatgga gtccagattc gcttcatcac agagccagtg
      181 tgtgatgcag agatgggcac cctacgtcgt ggtggacgac gcccagctaa ggatgcaaga
      241 gccaatacct atggggttgc cgtgcgtgtg cagggcatcg ctgggcaacc cttcgtggtg
      301 ctcaacagtg gagagaaagg tggcgactcc tttggagtcc agatcaaggg ggccaacaac
      361 cgaggggccc caggagctct gagctccgac tcggaacttc ccgagagccc ctactctcag
      421 gccaaggagt ttcctgcccg ctcgcaggga agcacatctg atgaggagcc cggggcccac
      481 tggaatggaa ggctactgcg ctcccagtcc caggcctcac tggcaggccc tgcccctatg
      541 ggtccaagca acaggagcac cagcctgctg gagctagccc accaaggagc ttacctgggc
      601 agcaccattg acactgcccc cctgtcttcg gtggactccc tcatcaacaa gtttgacagt
      661 caccatgggg gccaggcccg gggccggact ggccgccgca cgcggatgct gccccctgaa
      721 cagcgcaagc ggagccagag cctggacagc cggctcccac gggacaccgt tgaggaacgg
      781 gagcgctggt cccccaaccg ctggacccct agcacaaagc atgaccagca cacgggcagc
      841 ttgaaacagt cagcccagag ctgtcttggt ggctttagcc attcccgtca gacccaggac
      901 tgggtccttc agagttttga ggagccacgg gggagagcac aggaccctcc catgctacag
      961 ttcaaatcaa ctccagacct tctccgagac cagcaggagg cagtcccacc aggcagtgtg
     1021 gaccacgtga aggccaccat ctacggcatc ctgagagacg gaagctcaga aagtgaaacc
     1081 tctgtgagga ggaaggtcag tttgttgctg gagcagatgc agcctctggt gatggtttct
     1141 tctggttcca ctaaggcagg gcagggtgaa ctcacccaaa aagtggagga gctacagaaa
     1201 aagctggatg aagaagtgaa gaaacggcag aagctagagc cattccgggt tgggctggag
     1261 cggcagctag aggagaaggc agaagagtgc agccgactgc aggagctgct ggagaggagg
     1321 aatggggaag cccagcagag caccaaggag ctccagaaca tgaagctcct cctggaccag
     1381 ggtgaaatgg tacggcatgg gctggagatg caagtgatgg agctgcagga caagctgaaa
     1441 caggcccaga gtcctgagcc tgctaaagag gtgctaatga aggacctggt agagacccgg
     1501 gagcttctgg aagaggtctt agaggggaag cagcgggtag aggagcagct gaggctgcgg
     1561 gagcgggagc tgacagcact gaagggcgcc ctgaaggagg aggtggcctc ccgtgaccag
     1621 gaggtagagc atgtgcggca gcagtaccag cgggacgcag agcagcttcg ccggagcatg
     1681 caggatgcaa cccaggatta cgcagcattg gaggctgaga ggcagaagat gttagccctg
     1741 gtgcgggagc tgcagaggga gctggaggag acctcggagg agacagggca ttggcagagc
     1801 atgtttcaga agaacaagga ggaacttaga gccaccaagc aagaactcct gcagctgcgg
     1861 atggagaagg aggagatgga agaggaactt ggggagaaga tagaggtctt gcagagggaa
     1921 ttagggcagg cgcgggctgg tgctggagat actcgccagg tggaggagct caagaaggag
     1981 ctgcgccgga cacaggagga acttaaggag ctgcaggcag agaagcagag ccaggaggtg
     2041 actgggcgac accgggagcg ggagttggag aagcagctga gggtagaggc tgaacgaggc
     2101 cgggggctgg aacagcagaa cctccagcta caaaagaccc tccatcaact gagacaagac
     2161 tgtgaagagg cttccaaggc tcagatggca gcagaggcag aaatggcagt gctggggcag
     2221 cgtcggacag cagtggaaac gacgcttcgg gagacccagg aggaaaatga tgacttccga
     2281 aggcgcatcc tgggtctgga gcagcagctg aaggaggcac gaggcttggc ggagggtggg
     2341 gaagtggcgg aggctcggct tcgggacaag gtgcagcggt tagaggcaga gaaacagcgg
     2401 ctagaggagg ccctgaacac agctcaggaa gaggagggga gcctgacagc agccaagcgg
     2461 gcactggagg cacggctgga agaggcccag cgggggttgg cccgtctggg acaggagcag
     2521 caggctctga accgggccct ggaggaggag gggaagcagc gggaggcgct ccggcgcagc
     2581 aaggctgagc tggaggagca gaagcgcttg ctggacagga ctgtggaccg gctgaacaag
     2641 gagctggagc agattgggga tgactctaag caagccctgc agcagctcca ggcccagctg
     2701 gaggattaca aggaaaaggc ccggcgggag gtggcggatg cccaacgcca ggccaaggag
     2761 tgggccagtg aggctgagaa gaccgctgga gggctaagcc ggcttcagga tgagactcag
     2821 aggctgcggc agggcctgca ggcatcccag gctgagcggg actctgcccg gctggacaaa
     2881 gagctgctgg tccagcgact gcaggggctg gagcaagagg cagagaacaa aaaacgctcc
     2941 caggatgaca ggagccgtca gctcaagggc cttgaggaaa aagtctcacg gctggaggtg
     3001 gagttagatg aggagaggag cactgtggag ctgctgacgg aacggatgaa tcgtggtcgg
     3061 gaccaggtgg accagctgag gacagagctt atgcaggaga ggtctgctcg gcaggacctg
     3121 gagtgtgaca aaatctcctt ggagagacag aacaaggact tgaagagccg gctggccagc
     3181 tcagaaggct tccagaagcc cagcgccagc ctctctcagc ttgagtccca gaatcgggag
     3241 ttgcaggagc ggctgcaggc tgaagagagg gagaagacag ttctgcagtc caccaaccga
     3301 aaactggagc ggagagttaa agagctgtcc atccagattg atgatgaacg acagcatgtg
     3361 aatgaccaga aagaccagct aagcctgagg gtgaaggctt tgaagcggca ggtggatgaa
     3421 gccgaagagg aaattgagcg actggatggc ctgaggaaga aggcccagcg tgagctggag
     3481 gaacagcatg aggtcaatga acagctccag gcccggatca aagtcctgga gaaggactcc
     3541 tggcgcaaag cttcccgctc agctgctgag tcaactctcc aacatgaagg gctgagctca
     3601 gatgaggaat ttgacagcgt ctacgatcct tcctccatcg cctcactgct tacggagagc
     3661 aacctgcaga ctagctcctg ttagctcgtg gtccacaagg gcccatgaac cacacttgag
     3721 gcctatcctg gccagtcctg ctctgctctg cccagcctca gattcctcat ccctgtgggg
     3781 gacccagtta ttcagaccta agacagggag gggtgtgagt gaaggtgata aaaaaggcat
     3841 cagcgctaag ccggtagaca gactttccct ttcccctgga ggagtgggca ttttaagcca
     3901 actgagcccc ctccttaagt gccgaccccc tcttctgctc cctcacagca gtaggttggt
     3961 gagcatatag gctgagaggg attgagcagg ataggaaggg atagaaattg ccatgtatat
     4021 aaagctttat ttctttagcc cttaacccca ggctcaggga aataccctat gtgattctgc
     4081 ccccttgact cctgcaactc atttccttcc cattctggag caccgtaagg ggaacattat
     4141 gggtaatgga catgctggcg tgactctacc cacttctcag aggctcttct ttgcacagtc
     4201 atggggccca tgtggtagtc cccacctgtc tccattcctg tattttttgt cttccccagg
     4261 ccaggatcca aggggtccct ttctcctcct cttcccatct ttaccgtttc tatgttcctt
     4321 ctttcttctc agtgccttag ctggggtgag gagataagga tgctcttctt gccttttatt
     4381 acctgcacat tcatacctct ccaaggacca ccctttcccc aaccggggcc ttctgccttc
     4441 cctgctgtcc caatgactgg tcgagagacc taccggcttc cctgcctatg aggccctgtg
     4501 agagggactt tgggagggcc atgataaggt ggtggggctg cttctgctca gggtttccat
     4561 ccttcctcct ctccctctgt gactatggat gtgcttataa gatggttgca cctgggaacc
     4621 ctgacaactg tctacgcaag tttgaaaagc aaaggttttg gtctccgggg ccttaacttg
     4681 tggtttctct gatcagatgt gcccaaactc agtagggaac cgagggaccc tcattatctc
     4741 aggagcttgg acctgataca gaggggctag aggctgactc ttggtagaaa tgggaagagg
     4801 caatggtgga cttattcctc ctttgggatt tggggagagc cacgttctgg tgggaggagg
     4861 taagggaggt gattcacctc tcttattttc taagcagact ctgtaagaag cctagaggag
     4921 ggagaaggct gttctcacca atgacttgta atttcatgat taaaaaaaat ttcctttatt
     4981 ctgcaaatca tatattctct cccaatccaa tccagcattg aatttatttt aaattaaata
     5041 ttaaaattat atatctatac tgaaa
//
LOCUS       XM_032607898            5062 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cingulin (CGN), transcript variant X2,
            mRNA.
ACCESSION   XM_032607898
VERSION     XM_032607898.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5062
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5062
                     /gene="CGN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741416"
     CDS             100..3681
                     /gene="CGN"
                     /codon_start=1
                     /product="cingulin isoform X2"
                     /protein_id="XP_032463789.1"
                     /db_xref="GeneID:116741416"
                     /translation="MEQVSTMAEPRGPVDHGVQIRFITEPVCDAEMGTLRRGGRRPAK
                     DARANTYGVAVRVQGIAGQPFVVLNSGEKGGDSFGVQIKGANNRGAPGALSSDSELPE
                     SPYSQAKEFPARSQGSTSDEEPGAHWNGRLLRSQSQASLAGPAPMGPSNRSTSLLELA
                     HQGAYLGSTIDTAPLSSVDSLINKFDSHHGGQARGRTGRRTRMLPPEQRKRSQSLDSR
                     LPRDTVEERERWSPNRWTPSTKHDQHTGSLKQSAQSCLGGFSHSRQTQDWVLQSFEEP
                     RGRAQDPPMLQFKSTPDLLRDQQEAVPPGSVDHVKATIYGILRDGSESETSVRRKVSL
                     LLEQMQPLVMVSSGSTKAGQGELTQKVEELQKKLDEEVKKRQKLEPFRVGLERQLEEK
                     AEECSRLQELLERRNGEAQQSTKELQNMKLLLDQGEMVRHGLEMQVMELQDKLKQAQS
                     PEPAKEVLMKDLVETRELLEEVLEGKQRVEEQLRLRERELTALKGALKEEVASRDQEV
                     EHVRQQYQRDAEQLRRSMQDATQDYAALEAERQKMLALVRELQRELEETSEETGHWQS
                     MFQKNKEELRATKQELLQLRMEKEEMEEELGEKIEVLQRELGQARAGAGDTRQVEELK
                     KELRRTQEELKELQAEKQSQEVTGRHRERELEKQLRVEAERGRGLEQQNLQLQKTLHQ
                     LRQDCEEASKAQMAAEAEMAVLGQRRTAVETTLRETQEENDDFRRRILGLEQQLKEAR
                     GLAEGGEVAEARLRDKVQRLEAEKQRLEEALNTAQEEEGSLTAAKRALEARLEEAQRG
                     LARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLDRTVDRLNKELEQIGDDSK
                     QALQQLQAQLEDYKEKARREVADAQRQAKEWASEAEKTAGGLSRLQDETQRLRQGLQA
                     SQAERDSARLDKELLVQRLQGLEQEAENKKRSQDDRSRQLKGLEEKVSRLEVELDEER
                     STVELLTERMNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKSRLASSEGF
                     QKPSASLSQLESQNRELQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVND
                     QKDQLSLRVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEVNEQLQARIKVLEKDS
                     WRKASRSAAESTLQHEGLSSDEEFDSVYDPSSIASLLTESNLQTSSC"
     misc_feature    1180..3504
                     /gene="CGN"
                     /note="Myosin tail; Region: Myosin_tail_1; pfam01576"
                     /db_xref="CDD:460256"
ORIGIN      
        1 gggacagagg gggagggccc gggagccgcg cgtgcagctc tacccgagcc cgagcccgag
       61 cccgggaacg ccgagcccgg ctggggaccc ctcctaccca tggagcaggt gtccaccatg
      121 gccgagcccc ggggccctgt agaccatgga gtccagattc gcttcatcac agagccagtg
      181 tgtgatgcag agatgggcac cctacgtcgt ggtggacgac gcccagctaa ggatgcaaga
      241 gccaatacct atggggttgc cgtgcgtgtg cagggcatcg ctgggcaacc cttcgtggtg
      301 ctcaacagtg gagagaaagg tggcgactcc tttggagtcc agatcaaggg ggccaacaac
      361 cgaggggccc caggagctct gagctccgac tcggaacttc ccgagagccc ctactctcag
      421 gccaaggagt ttcctgcccg ctcgcaggga agcacatctg atgaggagcc cggggcccac
      481 tggaatggaa ggctactgcg ctcccagtcc caggcctcac tggcaggccc tgcccctatg
      541 ggtccaagca acaggagcac cagcctgctg gagctagccc accaaggagc ttacctgggc
      601 agcaccattg acactgcccc cctgtcttcg gtggactccc tcatcaacaa gtttgacagt
      661 caccatgggg gccaggcccg gggccggact ggccgccgca cgcggatgct gccccctgaa
      721 cagcgcaagc ggagccagag cctggacagc cggctcccac gggacaccgt tgaggaacgg
      781 gagcgctggt cccccaaccg ctggacccct agcacaaagc atgaccagca cacgggcagc
      841 ttgaaacagt cagcccagag ctgtcttggt ggctttagcc attcccgtca gacccaggac
      901 tgggtccttc agagttttga ggagccacgg gggagagcac aggaccctcc catgctacag
      961 ttcaaatcaa ctccagacct tctccgagac cagcaggagg cagtcccacc aggcagtgtg
     1021 gaccacgtga aggccaccat ctacggcatc ctgagagacg gctcagaaag tgaaacctct
     1081 gtgaggagga aggtcagttt gttgctggag cagatgcagc ctctggtgat ggtttcttct
     1141 ggttccacta aggcagggca gggtgaactc acccaaaaag tggaggagct acagaaaaag
     1201 ctggatgaag aagtgaagaa acggcagaag ctagagccat tccgggttgg gctggagcgg
     1261 cagctagagg agaaggcaga agagtgcagc cgactgcagg agctgctgga gaggaggaat
     1321 ggggaagccc agcagagcac caaggagctc cagaacatga agctcctcct ggaccagggt
     1381 gaaatggtac ggcatgggct ggagatgcaa gtgatggagc tgcaggacaa gctgaaacag
     1441 gcccagagtc ctgagcctgc taaagaggtg ctaatgaagg acctggtaga gacccgggag
     1501 cttctggaag aggtcttaga ggggaagcag cgggtagagg agcagctgag gctgcgggag
     1561 cgggagctga cagcactgaa gggcgccctg aaggaggagg tggcctcccg tgaccaggag
     1621 gtagagcatg tgcggcagca gtaccagcgg gacgcagagc agcttcgccg gagcatgcag
     1681 gatgcaaccc aggattacgc agcattggag gctgagaggc agaagatgtt agccctggtg
     1741 cgggagctgc agagggagct ggaggagacc tcggaggaga cagggcattg gcagagcatg
     1801 tttcagaaga acaaggagga acttagagcc accaagcaag aactcctgca gctgcggatg
     1861 gagaaggagg agatggaaga ggaacttggg gagaagatag aggtcttgca gagggaatta
     1921 gggcaggcgc gggctggtgc tggagatact cgccaggtgg aggagctcaa gaaggagctg
     1981 cgccggacac aggaggaact taaggagctg caggcagaga agcagagcca ggaggtgact
     2041 gggcgacacc gggagcggga gttggagaag cagctgaggg tagaggctga acgaggccgg
     2101 gggctggaac agcagaacct ccagctacaa aagaccctcc atcaactgag acaagactgt
     2161 gaagaggctt ccaaggctca gatggcagca gaggcagaaa tggcagtgct ggggcagcgt
     2221 cggacagcag tggaaacgac gcttcgggag acccaggagg aaaatgatga cttccgaagg
     2281 cgcatcctgg gtctggagca gcagctgaag gaggcacgag gcttggcgga gggtggggaa
     2341 gtggcggagg ctcggcttcg ggacaaggtg cagcggttag aggcagagaa acagcggcta
     2401 gaggaggccc tgaacacagc tcaggaagag gaggggagcc tgacagcagc caagcgggca
     2461 ctggaggcac ggctggaaga ggcccagcgg gggttggccc gtctgggaca ggagcagcag
     2521 gctctgaacc gggccctgga ggaggagggg aagcagcggg aggcgctccg gcgcagcaag
     2581 gctgagctgg aggagcagaa gcgcttgctg gacaggactg tggaccggct gaacaaggag
     2641 ctggagcaga ttggggatga ctctaagcaa gccctgcagc agctccaggc ccagctggag
     2701 gattacaagg aaaaggcccg gcgggaggtg gcggatgccc aacgccaggc caaggagtgg
     2761 gccagtgagg ctgagaagac cgctggaggg ctaagccggc ttcaggatga gactcagagg
     2821 ctgcggcagg gcctgcaggc atcccaggct gagcgggact ctgcccggct ggacaaagag
     2881 ctgctggtcc agcgactgca ggggctggag caagaggcag agaacaaaaa acgctcccag
     2941 gatgacagga gccgtcagct caagggcctt gaggaaaaag tctcacggct ggaggtggag
     3001 ttagatgagg agaggagcac tgtggagctg ctgacggaac ggatgaatcg tggtcgggac
     3061 caggtggacc agctgaggac agagcttatg caggagaggt ctgctcggca ggacctggag
     3121 tgtgacaaaa tctccttgga gagacagaac aaggacttga agagccggct ggccagctca
     3181 gaaggcttcc agaagcccag cgccagcctc tctcagcttg agtcccagaa tcgggagttg
     3241 caggagcggc tgcaggctga agagagggag aagacagttc tgcagtccac caaccgaaaa
     3301 ctggagcgga gagttaaaga gctgtccatc cagattgatg atgaacgaca gcatgtgaat
     3361 gaccagaaag accagctaag cctgagggtg aaggctttga agcggcaggt ggatgaagcc
     3421 gaagaggaaa ttgagcgact ggatggcctg aggaagaagg cccagcgtga gctggaggaa
     3481 cagcatgagg tcaatgaaca gctccaggcc cggatcaaag tcctggagaa ggactcctgg
     3541 cgcaaagctt cccgctcagc tgctgagtca actctccaac atgaagggct gagctcagat
     3601 gaggaatttg acagcgtcta cgatccttcc tccatcgcct cactgcttac ggagagcaac
     3661 ctgcagacta gctcctgtta gctcgtggtc cacaagggcc catgaaccac acttgaggcc
     3721 tatcctggcc agtcctgctc tgctctgccc agcctcagat tcctcatccc tgtgggggac
     3781 ccagttattc agacctaaga cagggagggg tgtgagtgaa ggtgataaaa aaggcatcag
     3841 cgctaagccg gtagacagac tttccctttc ccctggagga gtgggcattt taagccaact
     3901 gagccccctc cttaagtgcc gaccccctct tctgctccct cacagcagta ggttggtgag
     3961 catataggct gagagggatt gagcaggata ggaagggata gaaattgcca tgtatataaa
     4021 gctttatttc tttagccctt aaccccaggc tcagggaaat accctatgtg attctgcccc
     4081 cttgactcct gcaactcatt tccttcccat tctggagcac cgtaagggga acattatggg
     4141 taatggacat gctggcgtga ctctacccac ttctcagagg ctcttctttg cacagtcatg
     4201 gggcccatgt ggtagtcccc acctgtctcc attcctgtat tttttgtctt ccccaggcca
     4261 ggatccaagg ggtccctttc tcctcctctt cccatcttta ccgtttctat gttccttctt
     4321 tcttctcagt gccttagctg gggtgaggag ataaggatgc tcttcttgcc ttttattacc
     4381 tgcacattca tacctctcca aggaccaccc tttccccaac cggggccttc tgccttccct
     4441 gctgtcccaa tgactggtcg agagacctac cggcttccct gcctatgagg ccctgtgaga
     4501 gggactttgg gagggccatg ataaggtggt ggggctgctt ctgctcaggg tttccatcct
     4561 tcctcctctc cctctgtgac tatggatgtg cttataagat ggttgcacct gggaaccctg
     4621 acaactgtct acgcaagttt gaaaagcaaa ggttttggtc tccggggcct taacttgtgg
     4681 tttctctgat cagatgtgcc caaactcagt agggaaccga gggaccctca ttatctcagg
     4741 agcttggacc tgatacagag gggctagagg ctgactcttg gtagaaatgg gaagaggcaa
     4801 tggtggactt attcctcctt tgggatttgg ggagagccac gttctggtgg gaggaggtaa
     4861 gggaggtgat tcacctctct tattttctaa gcagactctg taagaagcct agaggaggga
     4921 gaaggctgtt ctcaccaatg acttgtaatt tcatgattaa aaaaaatttc ctttattctg
     4981 caaatcatat attctctccc aatccaatcc agcattgaat ttattttaaa ttaaatatta
     5041 aaattatata tctatactga aa
//
LOCUS       XM_032607912            1898 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytidine/uridine monophosphate kinase 1
            (CMPK1), mRNA.
ACCESSION   XM_032607912
VERSION     XM_032607912.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1898
                     /gene="CMPK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 12 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741423"
     CDS             176..862
                     /gene="CMPK1"
                     /codon_start=1
                     /product="UMP-CMP kinase"
                     /protein_id="XP_032463803.1"
                     /db_xref="GeneID:116741423"
                     /translation="MLRRCGRRLLYVLGLSFPLLTGRPLFLCPHRLMRPQVVFVLGGP
                     GAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITIS
                     LLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI
                     ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFD
                     EVVKIFDKEG"
     misc_feature    284..850
                     /gene="CMPK1"
                     /note="UMP-CMP kinase family; Region: UMP_CMP_kin_fam;
                     TIGR01359"
                     /db_xref="CDD:273576"
ORIGIN      
        1 cgagagagca gcggaagccc gccccttccg gccgcggcgc ggacgcctcg gcagccacgg
       61 cggctggacc gcggctggcg ccggctcggc ccgccccctt ttccgtgccc cgctcccgct
      121 ccaacgcctg accggccgct gtcagctgca tcagcgtcct accgagccac ggtgcatgct
      181 tcgccgttgc ggccgccggc tgctgtacgt cctaggcctt agcttcccgc tgctgaccgg
      241 ccggccgctt ttcctctgcc cgcaccgcct catgaggccg caggtcgtgt tcgtcctcgg
      301 cggtcccggc gccggcaagg ggacccagtg cgcccgcatc gtcgagaaat atggctacac
      361 acacctttct gcaggagagc ttcttcgtga tgaaaggaag aacccagatt cacagtatgg
      421 tgaactcatt gagaagtaca ttaaagatgg aaagattgtg ccagttgaga taaccatcag
      481 tttgttgagg agggaaatgg atcagacgat ggcggccaat gctcagaaga ataaattctt
      541 gattgatggg tttccaagaa atcaagacaa ccttcaaggt tggaacaaga ccatggatgg
      601 gaaggctgat gtatctttcg ttttgttttt tgactgtaat aatgagatct gtattgaacg
      661 atgccttgag aggggaaaga gtagtggtag aagtgatgac aacagagaga gcttggaaaa
      721 gagaattcaa acctatcttc agtcaacaaa gccaattatt gacttatatg aagaaatggg
      781 gaaagtcaag aaaatagatg cttctaaatc tgttgatgaa gtttttgatg aagttgtgaa
      841 gatttttgac aaagaaggct aactctaaac ctgaaagcat ccttgaaatc aggcttgaat
      901 attgctttga tagctgctgt cacaacccct ttttaaggca attttaatct ttcataatta
      961 cttctcaatt aatggctgga aagtatgtag taagacagat tttttatctt catttttttt
     1021 tttttggtca caggagtaga cagtgaattc gagtctaact tcatcttagc tatggtgctc
     1081 acaaaacaaa gaagggtgtt agctagttct ttgtttttat tcaaaaagaa tatccctttt
     1141 atagtttgtg ccttctgtga gcaaaacttt ttagtatgtg cgtatatccc ttaagtaatt
     1201 ataacatgtt tggattaggg attccccacg tcttctttct cttgcaggat ttaaatttcc
     1261 aacctgttaa gtgaatttat ggaccaaatt ctaaggaact ttttgtgtag tgagttcttg
     1321 gacaatgtgt ttggtaaaca aagtcatgaa atgaattcct agaagtattt tagtatttat
     1381 caaatagctg accatttcct atagaaaggt aagaaaacgt aagctttgct ttactacagt
     1441 ttgtacagag ttgtttgcag ggcatagtct ttgcttccag gggttgggat gggggcactg
     1501 ggggttcaga gcctggtgga attgtcagtt ttattcgaca taaatctgag ggtaaggggc
     1561 aaggatcaca tctaatgaca tgtgttcctt ttgctctgtt atataatgtt attaatgatt
     1621 aaactgatct taacaaaatt cctagtagtg gaaccttgaa atgcatgtag atttatggta
     1681 aaatgatttg gttagtgttt tagtaagact tcaaagcttt ttttgtttgt tttctagact
     1741 aagcataggg ttagcacaaa gcagaagaaa tctaatggtt aaatttccca tttgtatttt
     1801 attttcttga atactttttt tcgtagttgt ttaagaagat ttaaaaattg cactttggtc
     1861 agaaaaataa taaatttatc ttacaaatgt ttgattcc
//
LOCUS       XM_032607924             588 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus retinal degeneration 3, GUCY2D regulator
            (RD3), mRNA.
ACCESSION   XM_032607924
VERSION     XM_032607924.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..588
                     /gene="RD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins"
                     /db_xref="GeneID:116741427"
     CDS             1..588
                     /gene="RD3"
                     /codon_start=1
                     /product="protein RD3"
                     /protein_id="XP_032463815.1"
                     /db_xref="GeneID:116741427"
                     /translation="MSLIPWLRWNEAPPRLSSRSPAQMVLETLMVELEGQMREAERQQ
                     WERSNAVRKICTGVDYSWLARAPRPTYDLSPGERLQLEDVCAKIHPSYCGPAILRFRQ
                     LMAEQEPEVQEVSRLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRSSLATFRSRARIT
                     PFASDIRTISQDVERDAPPLHRTWSMPEFRAQKED"
     misc_feature    16..399
                     /gene="RD3"
                     /note="RD3 protein; Region: RD3; pfam14473"
                     /db_xref="CDD:464183"
ORIGIN      
        1 atgtccctca tcccatggct ccggtggaac gaggctccgc cacggctgtc gtctcggagc
       61 ccggctcaga tggtgctgga gacgctcatg gtggagctag aggggcagat gcgagaggct
      121 gagaggcagc agtgggagcg cagcaatgcc gtcaggaaga tctgcaccgg agtggactac
      181 agctggctgg ccagagcgcc ccggcccacc tacgacctca gccctggcga gaggctgcaa
      241 ctagaggacg tctgcgccaa gatccaccca tcctactgtg ggcccgccat cctcaggttc
      301 cggcagctga tggcagagca ggagcccgag gtgcaggagg tgtcccggct cttccgctcg
      361 gtgctgcagg aagtcctgga gaggatgaag caggaggagg aggcgcacaa gctgacccgt
      421 cagtggagcc tgcggccccg cagcagcctg gccaccttca ggagccgcgc gcgcatcacc
      481 cccttcgcca gcgacatccg caccatctcc caggacgtgg agcgggacgc gccgccgctg
      541 caccggacct ggagcatgcc cgagttccgg gcacaaaaag aggactga
//
LOCUS       XM_032607936            1748 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acid phosphatase 6, lysophosphatidic
            (ACP6), mRNA.
ACCESSION   XM_032607936
VERSION     XM_032607936.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1748
                     /gene="ACP6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741433"
     CDS             431..1699
                     /gene="ACP6"
                     /codon_start=1
                     /product="lysophosphatidic acid phosphatase type 6"
                     /protein_id="XP_032463827.1"
                     /db_xref="GeneID:116741433"
                     /translation="MISRILRVRMWAPVGVLTSLAYCLHQRRGADDQNSVDRSLLELK
                     MVQVVFRHGARSPLKALPREEQQVEWKPQLLEVPPQTRLDYTVTNLAGGPKPHSPFDS
                     QYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPLEVFIRSTNI
                     YRNLESTRCLLAGLFQCQKEGPIIIHTDEASSEVLYPNYQNCQRLRERTRGRRQAASL
                     QPGISEDLKKVKEGMGIAGSDGVDFLILLDNMAAEQVHSLPSCPTLKRFAWMIEQRAV
                     DTALYILQREDRESLQMAVGQFLHILESNLLKVVDPATPPGKTRKLYLYAAHDVTLMP
                     LLMALGIFDHKWPPFAVDLTMELYQHRESKEWFVQLYYRGEEQVPEGCPDRLCPLDKF
                     LNTMSVYTLSPEKYHTLCSEAQVMGLGNSE"
     misc_feature    554..1549
                     /gene="ACP6"
                     /note="Histidine phosphatase domain found in histidine
                     acid phosphatases and phytases; contains a His residue
                     which is phosphorylated during the reaction; Region:
                     HP_HAP_like; cd07061"
                     /db_xref="CDD:132717"
     misc_feature    order(581..586,593..595,914..916,1412..1417)
                     /gene="ACP6"
                     /note="catalytic core [active]"
                     /db_xref="CDD:132717"
ORIGIN      
        1 taaaaaagtg gagtcgagtg atctgtgtta atggagtcac tgccgcccag gaactctagg
       61 caggttcctg tcccgtcaag cgtgctggag gccgaacttg gaatccaagt ttaaggttcc
      121 ctagaggacg aaggataagg agctgagctc cccgctcccc tcccagtctg cggcgggaga
      181 ggccaacccc gaccctggtt aaaactcctg gggagtcatc gctgctccca cctccgcttc
      241 ttcccccacg ctcccactcg gggtcccctt acacagctgg gagtcgcagc ggtcgcagct
      301 tgggcgggtg gatgtgctcg cccaccggtt cccgggaact tgggggcggc tgctgagccc
      361 cgtcgatcgc ggaggacttg tattcgcttt ctgcaccctc accccggaga ggagccgagg
      421 ggtttccccc atgatctccc ggatcttgag ggtgcgcatg tgggcccctg tcggcgtcct
      481 gacctcgctg gcgtactgcc tccaccagcg gcggggggct gacgaccaga attccgtcga
      541 ccgaagcctg ctggagctga aaatggtgca agtcgtgttt cgacacgggg cgcggagccc
      601 tctcaaggcg cttccgcggg aggagcagca ggtagagtgg aaaccccagc tactagaggt
      661 cccaccccaa actcggcttg attacacagt caccaatcta gctggtggcc cgaaaccaca
      721 ttctcctttc gactctcagt accacgagac cacgctgaag gggggcatgt ttgctggaca
      781 gctgaccaag gtgggcatgc agcagatgtt tgccctggga gagaggctga ggaagaacta
      841 cgtggaggac atcccctttc tttcgccaac cttcaaccca ctggaggtct tcattcgttc
      901 cactaacata tatcggaatc tggagtctac ccggtgtttg ctggctgggc ttttccaatg
      961 tcagaaagaa ggacccatca tcatccacac tgatgaagca agctctgaag tcttgtaccc
     1021 caactaccaa aactgccaga ggctccggga aagaaccaga ggccggaggc aggctgcttc
     1081 tttgcagcca gggatctcag aggatttgaa gaaggtgaag gaagggatgg gcattgccgg
     1141 tagcgatgga gtggacttcc tcatcctcct ggacaacatg gctgctgagc aggtgcacag
     1201 cctcccgagc tgccccacgc tgaagaggtt tgcatggatg attgagcaga gagcggtgga
     1261 cacagccttg tacatcctgc aaagggaaga cagggaaagc cttcagatgg cagtgggcca
     1321 attcctccac attctggaaa gcaacctgct gaaagtcgtg gaccctgcca ccccacccgg
     1381 caagaccaga aagctgtacc tctatgcagc tcatgatgtg accctcatgc ctctcttaat
     1441 ggccctgggg atttttgacc acaaatggcc cccgtttgct gtggacctga ccatggaact
     1501 ctaccagcac cgggagtcta aggagtggtt tgtgcagctc tattaccgtg gagaggagca
     1561 ggtgccggaa ggttgccctg accggctgtg tccactggac aagttcttga acaccatgtc
     1621 agtttatacc ttgagcccag aaaaatacca cacactctgc tctgaagccc aagtgatggg
     1681 acttggaaat agtgagtgat ttgtacaagt aggatgtgtt gattttttga ataaaatgcc
     1741 tttataca
//
LOCUS       XR_004346153             751 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116741435
            (LOC116741435), ncRNA.
ACCESSION   XR_004346153
VERSION     XR_004346153.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..751
                     /gene="LOC116741435"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116741435"
     ncRNA           1..751
                     /ncRNA_class="lncRNA"
                     /gene="LOC116741435"
                     /product="uncharacterized LOC116741435"
                     /db_xref="GeneID:116741435"
ORIGIN      
        1 ttgggaggaa gcagctactc aaccatgcag ctctgaaact ccaagaaaga atcaaagatt
       61 tctgcagcaa ggaggttgga taaggatgag taccaggcag aaaacttctg gccactgaag
      121 agagagctca atataggcag gaggccagaa tgtgccaaca aaagaagacc atatcccaga
      181 gcagcctcac agaaagatta aagcctggga accgaggtgc atggtgtaaa ggaagaaaag
      241 ccagggcatg tgcatcactg gacaggcacc tgaaatgcat cactggacag gcacccgaaa
      301 tgcatcataa tcttcctgct gggagctgta gggtttctca cctcccctct cttcaccctt
      361 tgagccataa ttgccgaaat ggacagatta tcacaatttc agccgatgca actatctcac
      421 taatgctcat ttgctgactt taatgagttc cagaaccaat ttgtgtgatc ttacaatcag
      481 ctcaggttta tcactgaaag aaagcgctgt aagtcttggt agagagatca gctttgcaga
      541 atgcagatct accgatagga aaatgaattc aaatgaatta ttgcagcatt gtgaggcgtc
      601 aaagttcccc aacaccgtta aacacagaaa tgttagatgc tccctgccct gatgagctgc
      661 cttttgtcca acacctgtct tgcaaactac attcaagtat ccttttgttc tcttcaaatt
      721 tcacagcttc ctctgctctg cctaaaaagg a
//
LOCUS       XM_032607958            4869 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RCSD domain containing 1 (RCSD1),
            transcript variant X1, mRNA.
ACCESSION   XM_032607958
VERSION     XM_032607958.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4869
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4869
                     /gene="RCSD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741436"
     CDS             53..1489
                     /gene="RCSD1"
                     /codon_start=1
                     /product="capZ-interacting protein isoform X1"
                     /protein_id="XP_032463849.1"
                     /db_xref="GeneID:116741436"
                     /translation="MLPSPTQSRTFKKKKRKKNHKHEYALQVLVITWPTVSFPRARAA
                     RAVPQPASRARSRPLTLCPPQPNPAQAGAERRAGIASPGQSERALPPPSRHLEDMEER
                     PAETNASVDDSAPPSVAQLAGRFREQAAAAKTPASKPTRRKPPCSLSLFPPRVELGQN
                     GEEKSPPNASHPPKVKVKSSPLIEKLQANLVFDPAALLPGASPKSPGLKAMVSPFHSP
                     PSTPSSPGVWSRASEPEEVPVSFDQPPEGSHLPSYNKVRTRGSIKRRPPSRRFRRSQS
                     EDCADLGGLRAEESSQENGAKEENGDEVFLAKSKTPGSPPLRRTPSWTEKQEEKGRAL
                     RVAQQHEKAVGSSEEGASQHPARASSPEAENGGGSPTEEKPAEGQMEEPTEVKERAAS
                     EEEEPEKSSQDTEGLEEGAVGKETPQNPPGGGEGDHSSEQGAGKEKQDDGTILEPGCD
                     PVTGHAQPDTSSEVPKTEDNTPVQDTKM"
     misc_feature    <167..772
                     /gene="RCSD1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    566..>841
                     /gene="RCSD1"
                     /note="WASH complex subunit CAP-Z interacting, central
                     region; Region: CAP-ZIP_m; pfam15255"
                     /db_xref="CDD:464595"
     misc_feature    995..1198
                     /gene="RCSD1"
                     /note="RCSD region; Region: RCSD; pfam05177"
                     /db_xref="CDD:428350"
ORIGIN      
        1 gcagaaagga aaatgcccca tgagtcagag ttagaagata tgggaagaga ctatgctccc
       61 atcaccaact cagtcccgca cctttaaaaa gaagaaaagg aaaaagaatc acaagcacga
      121 gtatgcattg caagtgctgg tgatcacctg gcccactgtc tctttcccac gggcgcgggc
      181 ggcccgagca gtcccgcagc cagccagccg ggcgcgcagc cgcccactta cgctgtgccc
      241 gccgcagccg aacccggccc aggcgggagc cgaacggaga gcggggatcg cgagccccgg
      301 ccagagcgag cgcgcgctgc cgccgccgag tcggcacctg gaggacatgg aggaaaggcc
      361 agcagagacc aacgccagtg tggacgactc agcgcccccc tcggtggccc agctggccgg
      421 gcgattcagg gagcaggcgg ccgctgcaaa gacaccagcc agtaagccaa caagaaggaa
      481 accgccctgc tccctctctc tgttcccccc cagggtagag ctgggccaga atggtgaaga
      541 gaagtcaccg cccaatgcaa gccaccctcc taaagtcaag gtgaagagct cgcctctgat
      601 cgagaagctc caggccaatt tagtctttga tccagcggcc ctgctgcctg gggcctcacc
      661 caagagtcct ggactcaagg ccatggtgtc accatttcac agcccgcctt ctacccccag
      721 cagccctggc gtgtggtctc gggccagtga gccagaggag gtgcccgtca gctttgacca
      781 gcctcctgag ggcagtcatc tgccctctta caataaggtg cggacaaggg gctccataaa
      841 aaggcgccct ccctccaggc gattccgaag gtctcagtcg gaggactgtg cggacctggg
      901 ggggctcagg gccgaagagt cctcccagga gaatggtgcc aaggaagaga atggggacga
      961 ggtgttccta gccaagagca agaccccagg atcccctcct ctgaggagga cgcccagctg
     1021 gacagagaag caggaggaga agggcagggc tttgagggta gcccagcagc acgaaaaggc
     1081 cgtggggagc tccgaggagg gggccagcca gcatccagcc cgagcctcca gcccagaggc
     1141 agagaacggg ggtgggagcc ccacggagga gaaaccggct gaagggcaga tggaagagcc
     1201 tacagaggtg aaggagagag cggccagcga agaggaggag cctgaaaaaa gcagccaaga
     1261 cacagagggg ctggaggagg gagctgtggg gaaggagacc ccccaaaacc cccctggagg
     1321 aggagagggc gaccacagtt ctgagcaggg ggctggcaag gaaaagcaag atgacgggac
     1381 catcctcgag ccaggctgtg accctgtcac tggccacgcc cagccggaca ctagcagtga
     1441 ggtccccaag acggaggata atacccctgt ccaggacact aaaatgtgaa gaagatctca
     1501 ttgtgcctag tgatgaagct gctggagccg tgtccttgaa gtagcagcaa tgattgtagc
     1561 ggcagcaaag gaagccatcg cagaagcggg atgggctgag ggtctggagt cagcctgagg
     1621 acacagggtg ccatttcccg acctcagcac cattgtagac agagattgga tctgagggca
     1681 gcagactttt atcaacttga taaaagttgt gtcacttgat ggacttggtt taaaaaaaaa
     1741 caacttattt aaaacaattt actatggtga caactcccca ggaatactgg tcaaactgtg
     1801 gggcccatat actgtccaca cccacctaac cctatagcgg acctcagaac tggactgaga
     1861 tctacctaat cagattgtgt ttgtgtaagg tgacagcctt tttattgttc ttaagttttc
     1921 atgattctca agtgtaagta aaaactcatt tcaagtagct agaaacaaag tagtatcact
     1981 ggaaatataa atcctgtaag ttacagagga ccttaaattg tatggagacc ctgagacagc
     2041 ctttcagctt ggtccagatt tgactggcca accaattttg aaaacattgg ccgagaagag
     2101 ataattattg aaacatttaa aaatatgtgt ctgttccagc aacgggagct tttccatcag
     2161 gtaattctct agctggtgat acactgggag gcgaccagct cggctcacct gcttctgcca
     2221 gggggagagc gagcagaggc gggcagcagc tcctttggag aggcaagatg tctctgtgct
     2281 gcatttcctc atcctgtaag cagagcagtg acacctggac aatgcctgcc ctctggttag
     2341 gatgaagttt gtgcttccgg aggggaagcc tcgagcacgg attagatatc tcctgggaag
     2401 tgctttgagc ttcgtgatgt gcaagctaca taatgagaac atccttcctg gcttctctga
     2461 cttgaacgga aacccaggct ctcctccccg actcaggagg ggtggggcgg gtcttctgtc
     2521 tgttcctcct gggtagctct tgctttatcg gtctgttcgg agagtgcgtg gggcttcgcc
     2581 ggggacaggg ggcctgatac cccttccttg acatatcctc tcccctcttc ccacactcct
     2641 gctgaaagac gctcgtccaa ataaatgttt aatcttaagg gttggccctt attcagattt
     2701 gagtatttca gtatctcagt atgctgactt ggtagctgga gcagtcattt ttctggaggt
     2761 ctcttagacc acactctact ctgaccacag aaagtagttt cccagactta aaaggcctta
     2821 tctcactgct ggtacctcgg tttatcaccc catttacagt ttttctaact ccaggatagt
     2881 gttaatattt gggatatata ttttttcaaa aactattttt aaatcaaatg cagcttctaa
     2941 accttgtaat ctagtgaaga ctgataccat aataagcttt gtattttagc agagtttggg
     3001 agatatgtgt gtcagttatt ttgagatctg tataatatct atcatctatc taacctatca
     3061 tctatctgtc atcgacagag aagtataccc cctaaacaat acatggattt atttatatat
     3121 gtctttgggc tgtttatata ttcgtgcaaa tatctgggca agagttttga gaacgtgagc
     3181 atgactgcaa tgaaaaaggg aaatctgcca cttctcttac tagaaaaagg aacgggacag
     3241 atgggatgta gatgtaaaaa taaaactcta tttttcttct ggagggtcca taccttacag
     3301 tagcagatga agaaggagca acaaaaacta agaatgtgac actgaaggag catgtatgac
     3361 ggtgtccagt tgtctcccca gttccttatt agtcacataa tttgatctat tttgtgagaa
     3421 cacaaaggcc ccgccgcagg cattgttatt agtgatgggg ttcttggcgg ggaattcgtg
     3481 aagcaaaggc aggacctgtt ccctgtgggc gctgcaacct ggctgtttaa tgctctcctt
     3541 tctcgaagtg accgtgattc agtgttgcaa caccatggct gagactggga tttcacaccg
     3601 tggattgaag aaatccattt gtgtcttagg tggcacagag tcatcaccag gccaggaaga
     3661 cttttatcag gattccttaa taggcttgaa ggaaaacact gattcttcac agctacaagg
     3721 ctgaagagaa aaatcagaat cattcttcca ctacctttgt aacccagctt gaatattaaa
     3781 ctgtgtcctt cctttctcca gagagggagc aggaagaaaa cttgaatgct ttgaagggat
     3841 atgccagtat tgaaaagggg gctgcatgtg gaactgggta accagatatg accatgaaga
     3901 agagctcagg gacctcagaa gtccactctc cccactgagg tcaccctcaa caggaccctg
     3961 tttgccagac cagttttggc ctgtgaccag ctgactagtc actccgtaaa atgtcagata
     4021 agggaataaa ggagtggaca accagttcat catcttcttt tgattcggta ctcttgggaa
     4081 tgtaaaactt taatacagtt gaatgaatga ggaccttcag ttgctaatga aaggaaccca
     4141 actcaaacag gctgatacaa aacagctata tctatgaatc tccctctctc tctctcgttc
     4201 tctgtctgtc cgtctctccc tccctcctgc tatacactga ataatacgtt ttgacaatcc
     4261 atggacagac ctgaatacaa gcacttaagc aatgtcagaa atctttctct gttattggtc
     4321 tctgctttcc tctgtgttgg ccatattctc aggcagcctc ttcccagcct gcaaacccaa
     4381 tggaaagagc ttattttttt cccagtaact gtggggaaaa atcctgcaaa ggttttctat
     4441 aggcttggtg gggatcctat atctatacct gagccaatca ttatgaccaa ggagatgcag
     4501 agatcagatt ggccggccct ctgtcactct cctgcagtta ggggctaggt gagttaattc
     4561 tatttcatct gcaaggactg tgaatggagc aaggtaaaat cagagtgctg ttaccaaaag
     4621 atatgatgct gtgtgggaga aacaacaaca acaatagagc tctgagcaaa attcgagtgc
     4681 tactcagata aaacggaatt tgttttcata agccaccaaa gaaaaatcag tctcgtttta
     4741 aatgtaataa tgtatcactg tgtccagagc cagcctggag ctccatgagg gtcaagtctg
     4801 tttgtgtagt tcattgtgcc agtgcctcat gtattatagg tgctcaataa acatttggta
     4861 agtaatgaa
//
LOCUS       XM_032607966            4782 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RCSD domain containing 1 (RCSD1),
            transcript variant X2, mRNA.
ACCESSION   XM_032607966
VERSION     XM_032607966.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4782
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4782
                     /gene="RCSD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741436"
     CDS             56..1402
                     /gene="RCSD1"
                     /codon_start=1
                     /product="capZ-interacting protein isoform X2"
                     /protein_id="XP_032463857.1"
                     /db_xref="GeneID:116741436"
                     /translation="MLPSPTQSRTFKKKKRKKNHKHEYALQVLVITWPTVSFPRARAA
                     RAVPQPASRARSRPLTLCPPQPNPAQAGAERRAGIASPGQSERALPPPSRHLEDMEER
                     PAETNASVDDSAPPSVAQLAGRFREQAAAAKKSPPNASHPPKVKVKSSPLIEKLQANL
                     VFDPAALLPGASPKSPGLKAMVSPFHSPPSTPSSPGVWSRASEPEEVPVSFDQPPEGS
                     HLPSYNKVRTRGSIKRRPPSRRFRRSQSEDCADLGGLRAEESSQENGAKEENGDEVFL
                     AKSKTPGSPPLRRTPSWTEKQEEKGRALRVAQQHEKAVGSSEEGASQHPARASSPEAE
                     NGGGSPTEEKPAEGQMEEPTEVKERAASEEEEPEKSSQDTEGLEEGAVGKETPQNPPG
                     GGEGDHSSEQGAGKEKQDDGTILEPGCDPVTGHAQPDTSSEVPKTEDNTPVQDTKM"
     misc_feature    <170..>598
                     /gene="RCSD1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    479..>754
                     /gene="RCSD1"
                     /note="WASH complex subunit CAP-Z interacting, central
                     region; Region: CAP-ZIP_m; pfam15255"
                     /db_xref="CDD:464595"
     misc_feature    908..1111
                     /gene="RCSD1"
                     /note="RCSD region; Region: RCSD; pfam05177"
                     /db_xref="CDD:428350"
ORIGIN      
        1 gaggcagaaa ggaaaatgcc ccatgagtca gagttagaag atatgggaag agactatgct
       61 cccatcacca actcagtccc gcacctttaa aaagaagaaa aggaaaaaga atcacaagca
      121 cgagtatgca ttgcaagtgc tggtgatcac ctggcccact gtctctttcc cacgggcgcg
      181 ggcggcccga gcagtcccgc agccagccag ccgggcgcgc agccgcccac ttacgctgtg
      241 cccgccgcag ccgaacccgg cccaggcggg agccgaacgg agagcgggga tcgcgagccc
      301 cggccagagc gagcgcgcgc tgccgccgcc gagtcggcac ctggaggaca tggaggaaag
      361 gccagcagag accaacgcca gtgtggacga ctcagcgccc ccctcggtgg cccagctggc
      421 cgggcgattc agggagcagg cggccgctgc aaagaagtca ccgcccaatg caagccaccc
      481 tcctaaagtc aaggtgaaga gctcgcctct gatcgagaag ctccaggcca atttagtctt
      541 tgatccagcg gccctgctgc ctggggcctc acccaagagt cctggactca aggccatggt
      601 gtcaccattt cacagcccgc cttctacccc cagcagccct ggcgtgtggt ctcgggccag
      661 tgagccagag gaggtgcccg tcagctttga ccagcctcct gagggcagtc atctgccctc
      721 ttacaataag gtgcggacaa ggggctccat aaaaaggcgc cctccctcca ggcgattccg
      781 aaggtctcag tcggaggact gtgcggacct gggggggctc agggccgaag agtcctccca
      841 ggagaatggt gccaaggaag agaatgggga cgaggtgttc ctagccaaga gcaagacccc
      901 aggatcccct cctctgagga ggacgcccag ctggacagag aagcaggagg agaagggcag
      961 ggctttgagg gtagcccagc agcacgaaaa ggccgtgggg agctccgagg agggggccag
     1021 ccagcatcca gcccgagcct ccagcccaga ggcagagaac gggggtggga gccccacgga
     1081 ggagaaaccg gctgaagggc agatggaaga gcctacagag gtgaaggaga gagcggccag
     1141 cgaagaggag gagcctgaaa aaagcagcca agacacagag gggctggagg agggagctgt
     1201 ggggaaggag accccccaaa acccccctgg aggaggagag ggcgaccaca gttctgagca
     1261 gggggctggc aaggaaaagc aagatgacgg gaccatcctc gagccaggct gtgaccctgt
     1321 cactggccac gcccagccgg acactagcag tgaggtcccc aagacggagg ataatacccc
     1381 tgtccaggac actaaaatgt gaagaagatc tcattgtgcc tagtgatgaa gctgctggag
     1441 ccgtgtcctt gaagtagcag caatgattgt agcggcagca aaggaagcca tcgcagaagc
     1501 gggatgggct gagggtctgg agtcagcctg aggacacagg gtgccatttc ccgacctcag
     1561 caccattgta gacagagatt ggatctgagg gcagcagact tttatcaact tgataaaagt
     1621 tgtgtcactt gatggacttg gtttaaaaaa aaacaactta tttaaaacaa tttactatgg
     1681 tgacaactcc ccaggaatac tggtcaaact gtggggccca tatactgtcc acacccacct
     1741 aaccctatag cggacctcag aactggactg agatctacct aatcagattg tgtttgtgta
     1801 aggtgacagc ctttttattg ttcttaagtt ttcatgattc tcaagtgtaa gtaaaaactc
     1861 atttcaagta gctagaaaca aagtagtatc actggaaata taaatcctgt aagttacaga
     1921 ggaccttaaa ttgtatggag accctgagac agcctttcag cttggtccag atttgactgg
     1981 ccaaccaatt ttgaaaacat tggccgagaa gagataatta ttgaaacatt taaaaatatg
     2041 tgtctgttcc agcaacggga gcttttccat caggtaattc tctagctggt gatacactgg
     2101 gaggcgacca gctcggctca cctgcttctg ccagggggag agcgagcaga ggcgggcagc
     2161 agctcctttg gagaggcaag atgtctctgt gctgcatttc ctcatcctgt aagcagagca
     2221 gtgacacctg gacaatgcct gccctctggt taggatgaag tttgtgcttc cggaggggaa
     2281 gcctcgagca cggattagat atctcctggg aagtgctttg agcttcgtga tgtgcaagct
     2341 acataatgag aacatccttc ctggcttctc tgacttgaac ggaaacccag gctctcctcc
     2401 ccgactcagg aggggtgggg cgggtcttct gtctgttcct cctgggtagc tcttgcttta
     2461 tcggtctgtt cggagagtgc gtggggcttc gccggggaca gggggcctga taccccttcc
     2521 ttgacatatc ctctcccctc ttcccacact cctgctgaaa gacgctcgtc caaataaatg
     2581 tttaatctta agggttggcc cttattcaga tttgagtatt tcagtatctc agtatgctga
     2641 cttggtagct ggagcagtca tttttctgga ggtctcttag accacactct actctgacca
     2701 cagaaagtag tttcccagac ttaaaaggcc ttatctcact gctggtacct cggtttatca
     2761 ccccatttac agtttttcta actccaggat agtgttaata tttgggatat atattttttc
     2821 aaaaactatt tttaaatcaa atgcagcttc taaaccttgt aatctagtga agactgatac
     2881 cataataagc tttgtatttt agcagagttt gggagatatg tgtgtcagtt attttgagat
     2941 ctgtataata tctatcatct atctaaccta tcatctatct gtcatcgaca gagaagtata
     3001 ccccctaaac aatacatgga tttatttata tatgtctttg ggctgtttat atattcgtgc
     3061 aaatatctgg gcaagagttt tgagaacgtg agcatgactg caatgaaaaa gggaaatctg
     3121 ccacttctct tactagaaaa aggaacggga cagatgggat gtagatgtaa aaataaaact
     3181 ctatttttct tctggagggt ccatacctta cagtagcaga tgaagaagga gcaacaaaaa
     3241 ctaagaatgt gacactgaag gagcatgtat gacggtgtcc agttgtctcc ccagttcctt
     3301 attagtcaca taatttgatc tattttgtga gaacacaaag gccccgccgc aggcattgtt
     3361 attagtgatg gggttcttgg cggggaattc gtgaagcaaa ggcaggacct gttccctgtg
     3421 ggcgctgcaa cctggctgtt taatgctctc ctttctcgaa gtgaccgtga ttcagtgttg
     3481 caacaccatg gctgagactg ggatttcaca ccgtggattg aagaaatcca tttgtgtctt
     3541 aggtggcaca gagtcatcac caggccagga agacttttat caggattcct taataggctt
     3601 gaaggaaaac actgattctt cacagctaca aggctgaaga gaaaaatcag aatcattctt
     3661 ccactacctt tgtaacccag cttgaatatt aaactgtgtc cttcctttct ccagagaggg
     3721 agcaggaaga aaacttgaat gctttgaagg gatatgccag tattgaaaag ggggctgcat
     3781 gtggaactgg gtaaccagat atgaccatga agaagagctc agggacctca gaagtccact
     3841 ctccccactg aggtcaccct caacaggacc ctgtttgcca gaccagtttt ggcctgtgac
     3901 cagctgacta gtcactccgt aaaatgtcag ataagggaat aaaggagtgg acaaccagtt
     3961 catcatcttc ttttgattcg gtactcttgg gaatgtaaaa ctttaataca gttgaatgaa
     4021 tgaggacctt cagttgctaa tgaaaggaac ccaactcaaa caggctgata caaaacagct
     4081 atatctatga atctccctct ctctctctcg ttctctgtct gtccgtctct ccctccctcc
     4141 tgctatacac tgaataatac gttttgacaa tccatggaca gacctgaata caagcactta
     4201 agcaatgtca gaaatctttc tctgttattg gtctctgctt tcctctgtgt tggccatatt
     4261 ctcaggcagc ctcttcccag cctgcaaacc caatggaaag agcttatttt tttcccagta
     4321 actgtgggga aaaatcctgc aaaggttttc tataggcttg gtggggatcc tatatctata
     4381 cctgagccaa tcattatgac caaggagatg cagagatcag attggccggc cctctgtcac
     4441 tctcctgcag ttaggggcta ggtgagttaa ttctatttca tctgcaagga ctgtgaatgg
     4501 agcaaggtaa aatcagagtg ctgttaccaa aagatatgat gctgtgtggg agaaacaaca
     4561 acaacaatag agctctgagc aaaattcgag tgctactcag ataaaacgga atttgttttc
     4621 ataagccacc aaagaaaaat cagtctcgtt ttaaatgtaa taatgtatca ctgtgtccag
     4681 agccagcctg gagctccatg agggtcaagt ctgtttgtgt agttcattgt gccagtgcct
     4741 catgtattat aggtgctcaa taaacatttg gtaagtaatg aa
//
LOCUS       XM_032607976            4730 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RCSD domain containing 1 (RCSD1),
            transcript variant X3, mRNA.
ACCESSION   XM_032607976
VERSION     XM_032607976.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4730
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4730
                     /gene="RCSD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741436"
     CDS             16..1350
                     /gene="RCSD1"
                     /codon_start=1
                     /product="capZ-interacting protein isoform X3"
                     /protein_id="XP_032463867.1"
                     /db_xref="GeneID:116741436"
                     /translation="MHCKRRARAARAVPQPASRARSRPLTLCPPQPNPAQAGAERRAG
                     IASPGQSERALPPPSRHLEDMEERPAETNASVDDSAPPSVAQLAGRFREQAAAAKTPA
                     SKPTRRKPPCSLSLFPPRVELGQNGEEKSPPNASHPPKVKVKSSPLIEKLQANLVFDP
                     AALLPGASPKSPGLKAMVSPFHSPPSTPSSPGVWSRASEPEEVPVSFDQPPEGSHLPS
                     YNKVRTRGSIKRRPPSRRFRRSQSEDCADLGGLRAEESSQENGAKEENGDEVFLAKSK
                     TPGSPPLRRTPSWTEKQEEKGRALRVAQQHEKAVGSSEEGASQHPARASSPEAENGGG
                     SPTEEKPAEGQMEEPTEVKERAASEEEEPEKSSQDTEGLEEGAVGKETPQNPPGGGEG
                     DHSSEQGAGKEKQDDGTILEPGCDPVTGHAQPDTSSEVPKTEDNTPVQDTKM"
     misc_feature    427..>702
                     /gene="RCSD1"
                     /note="WASH complex subunit CAP-Z interacting, central
                     region; Region: CAP-ZIP_m; pfam15255"
                     /db_xref="CDD:464595"
     misc_feature    856..1059
                     /gene="RCSD1"
                     /note="RCSD region; Region: RCSD; pfam05177"
                     /db_xref="CDD:428350"
ORIGIN      
        1 atcacaagca cgagtatgca ttgcaagcgc agggcgcggg cggcccgagc agtcccgcag
       61 ccagccagcc gggcgcgcag ccgcccactt acgctgtgcc cgccgcagcc gaacccggcc
      121 caggcgggag ccgaacggag agcggggatc gcgagccccg gccagagcga gcgcgcgctg
      181 ccgccgccga gtcggcacct ggaggacatg gaggaaaggc cagcagagac caacgccagt
      241 gtggacgact cagcgccccc ctcggtggcc cagctggccg ggcgattcag ggagcaggcg
      301 gccgctgcaa agacaccagc cagtaagcca acaagaagga aaccgccctg ctccctctct
      361 ctgttccccc ccagggtaga gctgggccag aatggtgaag agaagtcacc gcccaatgca
      421 agccaccctc ctaaagtcaa ggtgaagagc tcgcctctga tcgagaagct ccaggccaat
      481 ttagtctttg atccagcggc cctgctgcct ggggcctcac ccaagagtcc tggactcaag
      541 gccatggtgt caccatttca cagcccgcct tctaccccca gcagccctgg cgtgtggtct
      601 cgggccagtg agccagagga ggtgcccgtc agctttgacc agcctcctga gggcagtcat
      661 ctgccctctt acaataaggt gcggacaagg ggctccataa aaaggcgccc tccctccagg
      721 cgattccgaa ggtctcagtc ggaggactgt gcggacctgg gggggctcag ggccgaagag
      781 tcctcccagg agaatggtgc caaggaagag aatggggacg aggtgttcct agccaagagc
      841 aagaccccag gatcccctcc tctgaggagg acgcccagct ggacagagaa gcaggaggag
      901 aagggcaggg ctttgagggt agcccagcag cacgaaaagg ccgtggggag ctccgaggag
      961 ggggccagcc agcatccagc ccgagcctcc agcccagagg cagagaacgg gggtgggagc
     1021 cccacggagg agaaaccggc tgaagggcag atggaagagc ctacagaggt gaaggagaga
     1081 gcggccagcg aagaggagga gcctgaaaaa agcagccaag acacagaggg gctggaggag
     1141 ggagctgtgg ggaaggagac cccccaaaac ccccctggag gaggagaggg cgaccacagt
     1201 tctgagcagg gggctggcaa ggaaaagcaa gatgacggga ccatcctcga gccaggctgt
     1261 gaccctgtca ctggccacgc ccagccggac actagcagtg aggtccccaa gacggaggat
     1321 aatacccctg tccaggacac taaaatgtga agaagatctc attgtgccta gtgatgaagc
     1381 tgctggagcc gtgtccttga agtagcagca atgattgtag cggcagcaaa ggaagccatc
     1441 gcagaagcgg gatgggctga gggtctggag tcagcctgag gacacagggt gccatttccc
     1501 gacctcagca ccattgtaga cagagattgg atctgagggc agcagacttt tatcaacttg
     1561 ataaaagttg tgtcacttga tggacttggt ttaaaaaaaa acaacttatt taaaacaatt
     1621 tactatggtg acaactcccc aggaatactg gtcaaactgt ggggcccata tactgtccac
     1681 acccacctaa ccctatagcg gacctcagaa ctggactgag atctacctaa tcagattgtg
     1741 tttgtgtaag gtgacagcct ttttattgtt cttaagtttt catgattctc aagtgtaagt
     1801 aaaaactcat ttcaagtagc tagaaacaaa gtagtatcac tggaaatata aatcctgtaa
     1861 gttacagagg accttaaatt gtatggagac cctgagacag cctttcagct tggtccagat
     1921 ttgactggcc aaccaatttt gaaaacattg gccgagaaga gataattatt gaaacattta
     1981 aaaatatgtg tctgttccag caacgggagc ttttccatca ggtaattctc tagctggtga
     2041 tacactggga ggcgaccagc tcggctcacc tgcttctgcc agggggagag cgagcagagg
     2101 cgggcagcag ctcctttgga gaggcaagat gtctctgtgc tgcatttcct catcctgtaa
     2161 gcagagcagt gacacctgga caatgcctgc cctctggtta ggatgaagtt tgtgcttccg
     2221 gaggggaagc ctcgagcacg gattagatat ctcctgggaa gtgctttgag cttcgtgatg
     2281 tgcaagctac ataatgagaa catccttcct ggcttctctg acttgaacgg aaacccaggc
     2341 tctcctcccc gactcaggag gggtggggcg ggtcttctgt ctgttcctcc tgggtagctc
     2401 ttgctttatc ggtctgttcg gagagtgcgt ggggcttcgc cggggacagg gggcctgata
     2461 ccccttcctt gacatatcct ctcccctctt cccacactcc tgctgaaaga cgctcgtcca
     2521 aataaatgtt taatcttaag ggttggccct tattcagatt tgagtatttc agtatctcag
     2581 tatgctgact tggtagctgg agcagtcatt tttctggagg tctcttagac cacactctac
     2641 tctgaccaca gaaagtagtt tcccagactt aaaaggcctt atctcactgc tggtacctcg
     2701 gtttatcacc ccatttacag tttttctaac tccaggatag tgttaatatt tgggatatat
     2761 attttttcaa aaactatttt taaatcaaat gcagcttcta aaccttgtaa tctagtgaag
     2821 actgatacca taataagctt tgtattttag cagagtttgg gagatatgtg tgtcagttat
     2881 tttgagatct gtataatatc tatcatctat ctaacctatc atctatctgt catcgacaga
     2941 gaagtatacc ccctaaacaa tacatggatt tatttatata tgtctttggg ctgtttatat
     3001 attcgtgcaa atatctgggc aagagttttg agaacgtgag catgactgca atgaaaaagg
     3061 gaaatctgcc acttctctta ctagaaaaag gaacgggaca gatgggatgt agatgtaaaa
     3121 ataaaactct atttttcttc tggagggtcc ataccttaca gtagcagatg aagaaggagc
     3181 aacaaaaact aagaatgtga cactgaagga gcatgtatga cggtgtccag ttgtctcccc
     3241 agttccttat tagtcacata atttgatcta ttttgtgaga acacaaaggc cccgccgcag
     3301 gcattgttat tagtgatggg gttcttggcg gggaattcgt gaagcaaagg caggacctgt
     3361 tccctgtggg cgctgcaacc tggctgttta atgctctcct ttctcgaagt gaccgtgatt
     3421 cagtgttgca acaccatggc tgagactggg atttcacacc gtggattgaa gaaatccatt
     3481 tgtgtcttag gtggcacaga gtcatcacca ggccaggaag acttttatca ggattcctta
     3541 ataggcttga aggaaaacac tgattcttca cagctacaag gctgaagaga aaaatcagaa
     3601 tcattcttcc actacctttg taacccagct tgaatattaa actgtgtcct tcctttctcc
     3661 agagagggag caggaagaaa acttgaatgc tttgaaggga tatgccagta ttgaaaaggg
     3721 ggctgcatgt ggaactgggt aaccagatat gaccatgaag aagagctcag ggacctcaga
     3781 agtccactct ccccactgag gtcaccctca acaggaccct gtttgccaga ccagttttgg
     3841 cctgtgacca gctgactagt cactccgtaa aatgtcagat aagggaataa aggagtggac
     3901 aaccagttca tcatcttctt ttgattcggt actcttggga atgtaaaact ttaatacagt
     3961 tgaatgaatg aggaccttca gttgctaatg aaaggaaccc aactcaaaca ggctgataca
     4021 aaacagctat atctatgaat ctccctctct ctctctcgtt ctctgtctgt ccgtctctcc
     4081 ctccctcctg ctatacactg aataatacgt tttgacaatc catggacaga cctgaataca
     4141 agcacttaag caatgtcaga aatctttctc tgttattggt ctctgctttc ctctgtgttg
     4201 gccatattct caggcagcct cttcccagcc tgcaaaccca atggaaagag cttatttttt
     4261 tcccagtaac tgtggggaaa aatcctgcaa aggttttcta taggcttggt ggggatccta
     4321 tatctatacc tgagccaatc attatgacca aggagatgca gagatcagat tggccggccc
     4381 tctgtcactc tcctgcagtt aggggctagg tgagttaatt ctatttcatc tgcaaggact
     4441 gtgaatggag caaggtaaaa tcagagtgct gttaccaaaa gatatgatgc tgtgtgggag
     4501 aaacaacaac aacaatagag ctctgagcaa aattcgagtg ctactcagat aaaacggaat
     4561 ttgttttcat aagccaccaa agaaaaatca gtctcgtttt aaatgtaata atgtatcact
     4621 gtgtccagag ccagcctgga gctccatgag ggtcaagtct gtttgtgtag ttcattgtgc
     4681 cagtgcctca tgtattatag gtgctcaata aacatttggt aagtaatgaa
//
LOCUS       XM_032607984            5323 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RCSD domain containing 1 (RCSD1),
            transcript variant X4, mRNA.
ACCESSION   XM_032607984
VERSION     XM_032607984.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5323
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5323
                     /gene="RCSD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741436"
     CDS             804..1943
                     /gene="RCSD1"
                     /codon_start=1
                     /product="capZ-interacting protein isoform X4"
                     /protein_id="XP_032463875.1"
                     /db_xref="GeneID:116741436"
                     /translation="MERPAETNASVDDSAPPSVAQLAGRFREQAAAAKTPASKPTRRK
                     PPCSLSLFPPRVELGQNGEEKSPPNASHPPKVKVKSSPLIEKLQANLVFDPAALLPGA
                     SPKSPGLKAMVSPFHSPPSTPSSPGVWSRASEPEEVPVSFDQPPEGSHLPSYNKVRTR
                     GSIKRRPPSRRFRRSQSEDCADLGGLRAEESSQENGAKEENGDEVFLAKSKTPGSPPL
                     RRTPSWTEKQEEKGRALRVAQQHEKAVGSSEEGASQHPARASSPEAENGGGSPTEEKP
                     AEGQMEEPTEVKERAASEEEEPEKSSQDTEGLEEGAVGKETPQNPPGGGEGDHSSEQG
                     AGKEKQDDGTILEPGCDPVTGHAQPDTSSEVPKTEDNTPVQDTKM"
     misc_feature    1020..>1295
                     /gene="RCSD1"
                     /note="WASH complex subunit CAP-Z interacting, central
                     region; Region: CAP-ZIP_m; pfam15255"
                     /db_xref="CDD:464595"
     misc_feature    1449..1652
                     /gene="RCSD1"
                     /note="RCSD region; Region: RCSD; pfam05177"
                     /db_xref="CDD:428350"
ORIGIN      
        1 agtgagaggc ccacgtaccg caaaaaaaaa agattataga attacatttt atgtgatctc
       61 atttgatatt ctgtgatcaa gtaccttatt catgcgttct tccattcatt catttaagaa
      121 catgtactga gcagctacca aatgagaatt tataagacac agtgcctgtt ctcaagatcc
      181 atacagtctg gaggaagaga gcagggcaga aatggaaaca atgattgcag aacgatgtga
      241 tgggctctgt aaagtcagcg tgtaagcagt ccaattggac aagcgaggac aggtgattgt
      301 agtggtctag gcaggctagc ctcactgtaa aacaattcca tagtcttact tgttgaaaac
      361 aatgaaggct tgtttctcac tctgcggagg gttggctggg gactctgctg catgtcactg
      421 tcgtcctccc tgtgggaccc aggttgacag agcagccacc atatggaaca ttgtcagtta
      481 tcatagcaga gggagggttc caaaggactt gccccggccg tggctctggc ctggaagggt
      541 tggaaagagc cacatcaact cgaccacagg gatgaggaag tgcaatcctc ctacatgccc
      601 cacatgatga gagctagata cgtttcgtga ccatcctttg ggtcctggtg gaatcttaga
      661 agacttcaca gagcagatga tctttgagat ggtctggaag taagacttgt gtctttcagg
      721 ctgacaaagg tgtgaaggct gaggaagaaa gcatttatct gtgccactcc gggctcactc
      781 acttgagact taacaaaatt ctcatggaaa ggccagcaga gaccaacgcc agtgtggacg
      841 actcagcgcc cccctcggtg gcccagctgg ccgggcgatt cagggagcag gcggccgctg
      901 caaagacacc agccagtaag ccaacaagaa ggaaaccgcc ctgctccctc tctctgttcc
      961 cccccagggt agagctgggc cagaatggtg aagagaagtc accgcccaat gcaagccacc
     1021 ctcctaaagt caaggtgaag agctcgcctc tgatcgagaa gctccaggcc aatttagtct
     1081 ttgatccagc ggccctgctg cctggggcct cacccaagag tcctggactc aaggccatgg
     1141 tgtcaccatt tcacagcccg ccttctaccc ccagcagccc tggcgtgtgg tctcgggcca
     1201 gtgagccaga ggaggtgccc gtcagctttg accagcctcc tgagggcagt catctgccct
     1261 cttacaataa ggtgcggaca aggggctcca taaaaaggcg ccctccctcc aggcgattcc
     1321 gaaggtctca gtcggaggac tgtgcggacc tgggggggct cagggccgaa gagtcctccc
     1381 aggagaatgg tgccaaggaa gagaatgggg acgaggtgtt cctagccaag agcaagaccc
     1441 caggatcccc tcctctgagg aggacgccca gctggacaga gaagcaggag gagaagggca
     1501 gggctttgag ggtagcccag cagcacgaaa aggccgtggg gagctccgag gagggggcca
     1561 gccagcatcc agcccgagcc tccagcccag aggcagagaa cgggggtggg agccccacgg
     1621 aggagaaacc ggctgaaggg cagatggaag agcctacaga ggtgaaggag agagcggcca
     1681 gcgaagagga ggagcctgaa aaaagcagcc aagacacaga ggggctggag gagggagctg
     1741 tggggaagga gaccccccaa aacccccctg gaggaggaga gggcgaccac agttctgagc
     1801 agggggctgg caaggaaaag caagatgacg ggaccatcct cgagccaggc tgtgaccctg
     1861 tcactggcca cgcccagccg gacactagca gtgaggtccc caagacggag gataataccc
     1921 ctgtccagga cactaaaatg tgaagaagat ctcattgtgc ctagtgatga agctgctgga
     1981 gccgtgtcct tgaagtagca gcaatgattg tagcggcagc aaaggaagcc atcgcagaag
     2041 cgggatgggc tgagggtctg gagtcagcct gaggacacag ggtgccattt cccgacctca
     2101 gcaccattgt agacagagat tggatctgag ggcagcagac ttttatcaac ttgataaaag
     2161 ttgtgtcact tgatggactt ggtttaaaaa aaaacaactt atttaaaaca atttactatg
     2221 gtgacaactc cccaggaata ctggtcaaac tgtggggccc atatactgtc cacacccacc
     2281 taaccctata gcggacctca gaactggact gagatctacc taatcagatt gtgtttgtgt
     2341 aaggtgacag cctttttatt gttcttaagt tttcatgatt ctcaagtgta agtaaaaact
     2401 catttcaagt agctagaaac aaagtagtat cactggaaat ataaatcctg taagttacag
     2461 aggaccttaa attgtatgga gaccctgaga cagcctttca gcttggtcca gatttgactg
     2521 gccaaccaat tttgaaaaca ttggccgaga agagataatt attgaaacat ttaaaaatat
     2581 gtgtctgttc cagcaacggg agcttttcca tcaggtaatt ctctagctgg tgatacactg
     2641 ggaggcgacc agctcggctc acctgcttct gccaggggga gagcgagcag aggcgggcag
     2701 cagctccttt ggagaggcaa gatgtctctg tgctgcattt cctcatcctg taagcagagc
     2761 agtgacacct ggacaatgcc tgccctctgg ttaggatgaa gtttgtgctt ccggagggga
     2821 agcctcgagc acggattaga tatctcctgg gaagtgcttt gagcttcgtg atgtgcaagc
     2881 tacataatga gaacatcctt cctggcttct ctgacttgaa cggaaaccca ggctctcctc
     2941 cccgactcag gaggggtggg gcgggtcttc tgtctgttcc tcctgggtag ctcttgcttt
     3001 atcggtctgt tcggagagtg cgtggggctt cgccggggac agggggcctg ataccccttc
     3061 cttgacatat cctctcccct cttcccacac tcctgctgaa agacgctcgt ccaaataaat
     3121 gtttaatctt aagggttggc ccttattcag atttgagtat ttcagtatct cagtatgctg
     3181 acttggtagc tggagcagtc atttttctgg aggtctctta gaccacactc tactctgacc
     3241 acagaaagta gtttcccaga cttaaaaggc cttatctcac tgctggtacc tcggtttatc
     3301 accccattta cagtttttct aactccagga tagtgttaat atttgggata tatatttttt
     3361 caaaaactat ttttaaatca aatgcagctt ctaaaccttg taatctagtg aagactgata
     3421 ccataataag ctttgtattt tagcagagtt tgggagatat gtgtgtcagt tattttgaga
     3481 tctgtataat atctatcatc tatctaacct atcatctatc tgtcatcgac agagaagtat
     3541 accccctaaa caatacatgg atttatttat atatgtcttt gggctgttta tatattcgtg
     3601 caaatatctg ggcaagagtt ttgagaacgt gagcatgact gcaatgaaaa agggaaatct
     3661 gccacttctc ttactagaaa aaggaacggg acagatggga tgtagatgta aaaataaaac
     3721 tctatttttc ttctggaggg tccatacctt acagtagcag atgaagaagg agcaacaaaa
     3781 actaagaatg tgacactgaa ggagcatgta tgacggtgtc cagttgtctc cccagttcct
     3841 tattagtcac ataatttgat ctattttgtg agaacacaaa ggccccgccg caggcattgt
     3901 tattagtgat ggggttcttg gcggggaatt cgtgaagcaa aggcaggacc tgttccctgt
     3961 gggcgctgca acctggctgt ttaatgctct cctttctcga agtgaccgtg attcagtgtt
     4021 gcaacaccat ggctgagact gggatttcac accgtggatt gaagaaatcc atttgtgtct
     4081 taggtggcac agagtcatca ccaggccagg aagactttta tcaggattcc ttaataggct
     4141 tgaaggaaaa cactgattct tcacagctac aaggctgaag agaaaaatca gaatcattct
     4201 tccactacct ttgtaaccca gcttgaatat taaactgtgt ccttcctttc tccagagagg
     4261 gagcaggaag aaaacttgaa tgctttgaag ggatatgcca gtattgaaaa gggggctgca
     4321 tgtggaactg ggtaaccaga tatgaccatg aagaagagct cagggacctc agaagtccac
     4381 tctccccact gaggtcaccc tcaacaggac cctgtttgcc agaccagttt tggcctgtga
     4441 ccagctgact agtcactccg taaaatgtca gataagggaa taaaggagtg gacaaccagt
     4501 tcatcatctt cttttgattc ggtactcttg ggaatgtaaa actttaatac agttgaatga
     4561 atgaggacct tcagttgcta atgaaaggaa cccaactcaa acaggctgat acaaaacagc
     4621 tatatctatg aatctccctc tctctctctc gttctctgtc tgtccgtctc tccctccctc
     4681 ctgctataca ctgaataata cgttttgaca atccatggac agacctgaat acaagcactt
     4741 aagcaatgtc agaaatcttt ctctgttatt ggtctctgct ttcctctgtg ttggccatat
     4801 tctcaggcag cctcttccca gcctgcaaac ccaatggaaa gagcttattt ttttcccagt
     4861 aactgtgggg aaaaatcctg caaaggtttt ctataggctt ggtggggatc ctatatctat
     4921 acctgagcca atcattatga ccaaggagat gcagagatca gattggccgg ccctctgtca
     4981 ctctcctgca gttaggggct aggtgagtta attctatttc atctgcaagg actgtgaatg
     5041 gagcaaggta aaatcagagt gctgttacca aaagatatga tgctgtgtgg gagaaacaac
     5101 aacaacaata gagctctgag caaaattcga gtgctactca gataaaacgg aatttgtttt
     5161 cataagccac caaagaaaaa tcagtctcgt tttaaatgta ataatgtatc actgtgtcca
     5221 gagccagcct ggagctccat gagggtcaag tctgtttgtg tagttcattg tgccagtgcc
     5281 tcatgtatta taggtgctca ataaacattt ggtaagtaat gaa
//
LOCUS       XM_032607993            1569 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PITH domain containing 1 (PITHD1),
            transcript variant X1, mRNA.
ACCESSION   XM_032607993
VERSION     XM_032607993.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1569
                     /gene="PITHD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 6 long SRA reads, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741456"
     CDS             95..730
                     /gene="PITHD1"
                     /codon_start=1
                     /product="PITH domain-containing protein 1 isoform X1"
                     /protein_id="XP_032463884.1"
                     /db_xref="GeneID:116741456"
                     /translation="MSHGHSHGGGGCRCAAEREEPPEQRGLAYGLYLRIDLERLQCLN
                     ESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSHP
                     SEMRLYKNIPQMSFDDTDREPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNF
                     GADTTKVFYIGLRGEWTELRRHEVTICSYEASANPADHRVHQVTPQTHFIS"
     misc_feature    185..619
                     /gene="PITHD1"
                     /note="PITH domain; Region: PITH; pfam06201"
                     /db_xref="CDD:461848"
ORIGIN      
        1 gcggcggtcg cggcgcgctt ggcggccgga gcgaaacgag cgagccgcgg gtggcggcgg
       61 cagggcacgg ggacgcgcgg gcggcggcgt cgccatgtcg catggccaca gtcacggcgg
      121 gggcggctgt cgctgcgccg ccgaacgtga ggagcctccc gagcagcgcg gcctggccta
      181 cggcctgtac ctgcgcatcg acctggagcg gctgcagtgt ctcaacgaga gccgcgaggg
      241 cagcggccgc ggcgtcttca agccgtggga ggagcggacc gaccgctcca agtttgttga
      301 aagtgatgca gatgaagagc ttctgtttaa tattccattt acaggcaatg tcaagctcaa
      361 aggtatcatt ataatgggag aagatgatga ctcacacccc tctgagatga gactgtacaa
      421 gaacattcca cagatgagct ttgatgatac agacagggag ccagatcaga cctttagtct
      481 gaaccgggat cttacaggag aactagagta tgctacaaaa atttctcgtt tttcaaatgt
      541 ctatcatctc tcaattcata tttcaaaaaa ctttggagcc gataccacaa aggtctttta
      601 tattggcctg agaggagaat ggactgagct tcgccgacat gaggtgacca tctgcagtta
      661 tgaagcatcg gccaacccag ctgaccacag ggtccatcag gttaccccac agacacactt
      721 tatttcctaa gggctggcca aggctcccac agaggcgttg tgtcagtgaa gatgtacgac
      781 atactgttgg gaaagacaga gagagatggg gctccagaga gagttggctg ccacagcctc
      841 tgccaagctt tgtctttggg gcttgctgca gaaacctgac gtacggaaga caccacaccc
      901 ccgggaaggg tcgtgtgggt gccgagggac aatcgtggtt ctctggggcc ctgcagaagt
      961 tgggtcttgg ggtggtcagc acctggcagt catggataat gcctgccttc ccagttaatg
     1021 tggccacggg atcccaagtg tcttgatgct ttgtggcagg atttttgtgt gacttgtttt
     1081 ttttaaatgg agactcctcc tgggctacag taaactctgt gaagcctcag cattgtgttc
     1141 gtattaacca ccaggagggt gtcgagctag aagtccttgt ccctgcgcgc tccttctccc
     1201 tgtcaccttt caccattctt gtcaagctgc ccagcttgga gttgtctgtc gtgcgctagt
     1261 gtcccacggt tatagttaga agagcaagaa tctcctgata atgcgtaata gcttgagaag
     1321 ttcttttttc ctgctaacca ggtaagcagt ctgaggagag catgggcatc gttttctgtg
     1381 tttgttggga tcctggtcgg ggtaagattg ggacttagat aagattcctc ttgggacatc
     1441 cttaatattt attagcttct aactagtgtt gtaagcccag ttgccaattt ggagatctca
     1501 gttcttttgt tcatggattt ttattcactg tgactaataa gcttcctaat aaatccttgc
     1561 cagacttaa
//
LOCUS       XM_032608002            1513 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PITH domain containing 1 (PITHD1),
            transcript variant X2, mRNA.
ACCESSION   XM_032608002
VERSION     XM_032608002.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1513
                     /gene="PITHD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741456"
     CDS             90..674
                     /gene="PITHD1"
                     /codon_start=1
                     /product="PITH domain-containing protein 1 isoform X2"
                     /protein_id="XP_032463893.1"
                     /db_xref="GeneID:116741456"
                     /translation="MATVTAGAAVAAPPNVRSLPSSAAWPTACTCASTWSGCSVSTRA
                     ARAAAAASSSRGRSGPTAPRFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDT
                     DREPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFGADTTKVFYIGLRGEWT
                     ELRRHEVTICSYEASANPADHRVHQVTPQTHFIS"
     misc_feature    <282..563
                     /gene="PITHD1"
                     /note="PITH domain; Region: PITH; pfam06201"
                     /db_xref="CDD:461848"
ORIGIN      
        1 gcgcgcttgg cggccggagc gaaacgagcg agccgcgggt ggcggcggca gggcacgggg
       61 acgcgcgggc ggcggcgtcg ccatgtcgca tggccacagt cacggcgggg gcggctgtcg
      121 ctgcgccgcc gaacgtgagg agcctcccga gcagcgcggc ctggcctacg gcctgtacct
      181 gcgcatcgac ctggagcggc tgcagtgtct caacgagagc cgcgagggca gcggccgcgg
      241 cgtcttcaag ccgtgggagg agcggaccga ccgctccaag atttacaggc aatgtcaagc
      301 tcaaaggtat cattataatg ggagaagatg atgactcaca cccctctgag atgagactgt
      361 acaagaacat tccacagatg agctttgatg atacagacag ggagccagat cagaccttta
      421 gtctgaaccg ggatcttaca ggagaactag agtatgctac aaaaatttct cgtttttcaa
      481 atgtctatca tctctcaatt catatttcaa aaaactttgg agccgatacc acaaaggtct
      541 tttatattgg cctgagagga gaatggactg agcttcgccg acatgaggtg accatctgca
      601 gttatgaagc atcggccaac ccagctgacc acagggtcca tcaggttacc ccacagacac
      661 actttatttc ctaagggctg gccaaggctc ccacagaggc gttgtgtcag tgaagatgta
      721 cgacatactg ttgggaaaga cagagagaga tggggctcca gagagagttg gctgccacag
      781 cctctgccaa gctttgtctt tggggcttgc tgcagaaacc tgacgtacgg aagacaccac
      841 acccccggga agggtcgtgt gggtgccgag ggacaatcgt ggttctctgg ggccctgcag
      901 aagttgggtc ttggggtggt cagcacctgg cagtcatgga taatgcctgc cttcccagtt
      961 aatgtggcca cgggatccca agtgtcttga tgctttgtgg caggattttt gtgtgacttg
     1021 ttttttttaa atggagactc ctcctgggct acagtaaact ctgtgaagcc tcagcattgt
     1081 gttcgtatta accaccagga gggtgtcgag ctagaagtcc ttgtccctgc gcgctccttc
     1141 tccctgtcac ctttcaccat tcttgtcaag ctgcccagct tggagttgtc tgtcgtgcgc
     1201 tagtgtccca cggttatagt tagaagagca agaatctcct gataatgcgt aatagcttga
     1261 gaagttcttt tttcctgcta accaggtaag cagtctgagg agagcatggg catcgttttc
     1321 tgtgtttgtt gggatcctgg tcggggtaag attgggactt agataagatt cctcttggga
     1381 catccttaat atttattagc ttctaactag tgttgtaagc ccagttgcca atttggagat
     1441 ctcagttctt ttgttcatgg atttttattc actgtgacta ataagcttcc taataaatcc
     1501 ttgccagact taa
//
LOCUS       XM_032608012            1452 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PITH domain containing 1 (PITHD1),
            transcript variant X3, mRNA.
ACCESSION   XM_032608012
VERSION     XM_032608012.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1452
                     /gene="PITHD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741456"
     CDS             83..613
                     /gene="PITHD1"
                     /codon_start=1
                     /product="PITH domain-containing protein 1 isoform X3"
                     /protein_id="XP_032463903.1"
                     /db_xref="GeneID:116741456"
                     /translation="MSHGHSHGGGGCRCAAEREEPPEQRGLAYGLYLRIDLERLQCLN
                     ESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSHP
                     SEMRLISRFSNVYHLSIHISKNFGADTTKVFYIGLRGEWTELRRHEVTICSYEASANP
                     ADHRVHQVTPQTHFIS"
     misc_feature    173..502
                     /gene="PITHD1"
                     /note="PITH domain; Region: PITH; pfam06201"
                     /db_xref="CDD:461848"
ORIGIN      
        1 gcgcgcttgg cggccggagc gaaacgagcg agccgcgggt ggcggcggca gggcacgggg
       61 acgcgcgggc ggcggcgtcg ccatgtcgca tggccacagt cacggcgggg gcggctgtcg
      121 ctgcgccgcc gaacgtgagg agcctcccga gcagcgcggc ctggcctacg gcctgtacct
      181 gcgcatcgac ctggagcggc tgcagtgtct caacgagagc cgcgagggca gcggccgcgg
      241 cgtcttcaag ccgtgggagg agcggaccga ccgctccaag tttgttgaaa gtgatgcaga
      301 tgaagagctt ctgtttaata ttccatttac aggcaatgtc aagctcaaag gtatcattat
      361 aatgggagaa gatgatgact cacacccctc tgagatgaga ctaatttctc gtttttcaaa
      421 tgtctatcat ctctcaattc atatttcaaa aaactttgga gccgatacca caaaggtctt
      481 ttatattggc ctgagaggag aatggactga gcttcgccga catgaggtga ccatctgcag
      541 ttatgaagca tcggccaacc cagctgacca cagggtccat caggttaccc cacagacaca
      601 ctttatttcc taagggctgg ccaaggctcc cacagaggcg ttgtgtcagt gaagatgtac
      661 gacatactgt tgggaaagac agagagagat ggggctccag agagagttgg ctgccacagc
      721 ctctgccaag ctttgtcttt ggggcttgct gcagaaacct gacgtacgga agacaccaca
      781 cccccgggaa gggtcgtgtg ggtgccgagg gacaatcgtg gttctctggg gccctgcaga
      841 agttgggtct tggggtggtc agcacctggc agtcatggat aatgcctgcc ttcccagtta
      901 atgtggccac gggatcccaa gtgtcttgat gctttgtggc aggatttttg tgtgacttgt
      961 tttttttaaa tggagactcc tcctgggcta cagtaaactc tgtgaagcct cagcattgtg
     1021 ttcgtattaa ccaccaggag ggtgtcgagc tagaagtcct tgtccctgcg cgctccttct
     1081 ccctgtcacc tttcaccatt cttgtcaagc tgcccagctt ggagttgtct gtcgtgcgct
     1141 agtgtcccac ggttatagtt agaagagcaa gaatctcctg ataatgcgta atagcttgag
     1201 aagttctttt ttcctgctaa ccaggtaagc agtctgagga gagcatgggc atcgttttct
     1261 gtgtttgttg ggatcctggt cggggtaaga ttgggactta gataagattc ctcttgggac
     1321 atccttaata tttattagct tctaactagt gttgtaagcc cagttgccaa tttggagatc
     1381 tcagttcttt tgttcatgga tttttattca ctgtgactaa taagcttcct aataaatcct
     1441 tgccagactt aa
//
LOCUS       XM_032608026            1755 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hsc70-interacting protein-like
            (LOC116741466), mRNA.
ACCESSION   XM_032608026
VERSION     XM_032608026.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1755
                     /gene="LOC116741466"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116741466"
     CDS             494..1000
                     /gene="LOC116741466"
                     /codon_start=1
                     /product="hsc70-interacting protein-like"
                     /protein_id="XP_032463917.1"
                     /db_xref="GeneID:116741466"
                     /translation="MVTSKVSKLQAFVKMCKQDTSVLHTEEMHFLREWVESMGGKIPP
                     ATHKTKLEENTKEEKTDSKKVEENIKTDEPSSEESDLEIDNEGVLEPGTDAPQEMGDE
                     NVEITEAMKDQANDKNVAASDALNVGELQKAIDLFTDAIKLNPRLAILYAKRASVFIK
                     LQKPNVAI"
     misc_feature    500..622
                     /gene="LOC116741466"
                     /note="N-terminal dimerization domain of the
                     Hsp70-interacting protein (Hip) and similar proteins;
                     Region: Hip_N; cd14438"
                     /db_xref="CDD:271228"
     misc_feature    order(506..511,515..523,527..532,539..544,560..562,
                     572..574,581..586,590..598,602..622)
                     /gene="LOC116741466"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:271228"
     misc_feature    <875..>997
                     /gene="LOC116741466"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; Region: TPR; COG0457"
                     /db_xref="CDD:440225"
ORIGIN      
        1 agataaaaaa gaaaaaataa ctcacgtggt ttattaaagg tcaggaatta cctgctctga
       61 tgcagcaaaa catctagaag gtgaaggatt caagtggtac gtaaagttgg acaggaagtt
      121 gagagatgtc aaaagataag tggtcttcta taagaatata tataagtgga ggatctaatt
      181 gttacttcct ttgaacatgt actgaataac cactgtaatg catagctgcc atgaagaaaa
      241 gaaaggttaa taaggaagta aaactacaga tcaaagcaga agcttctaga ctagactttt
      301 ccaggtctgg ttttggatct tttaaaacta attttacaga attagttcag tatgatatca
      361 cttatatgtg gaatctaaaa aagaaaacaa actgcccttt acgcggtcac gctgagctag
      421 tgcctgggcc tgggatgggg ctgcagtgtc cacacactca ccgcctcctg ctgtctcctg
      481 ctgcttccag accatggtca ccagcaaagt gagcaagctt caagccttcg tgaaaatgtg
      541 caagcaggac acgagtgttc tgcacaccga ggaaatgcac ttcctgaggg agtgggtgga
      601 gagtatgggg ggtaaaatac cacctgctac tcataaaact aaattggaag aaaataccaa
      661 ggaagaaaaa acagatagta agaaggtgga ggaaaacata aagacagacg aaccatcaag
      721 tgaggaaagt gatctagaaa ttgacaatga aggtgtgctt gaaccaggca ctgatgcccc
      781 tcaagaaatg ggagatgaaa atgtagagat aactgaggcg atgaaggatc aggcaaatga
      841 taaaaacgtg gctgccagtg atgccctaaa tgttggtgaa ctacagaaag ccattgactt
      901 gttcacagat gccatcaagc taaatcctcg tttggccatt ctgtatgcca agagagcaag
      961 tgtcttcatc aaattacaga agccaaatgt tgccatctga gactgtgaca gagctattga
     1021 aataaatcct gattctgctc agccatacaa gtggtgaggg aaagcacaca gacttttggg
     1081 ccattgggaa gaagctgcct atgatcttgc ccttgcctgt aaactggatt atgatgaaga
     1141 tgctagtgca atgctgaaag aagttcaacc aagggcccag aaaattgctg aacatcggag
     1201 aaagtatgag cgaaaatgtg aagagcaaga gatcaaagaa agaatagaaa gggtcaagaa
     1261 tgctcggaaa gaccatgaga gagcccagag ggaggaagaa gccagacaac agtcaggagc
     1321 tcagtatggc tcttttccag gcagctttcc tggcagaatg cctggtaatt ttcctggagg
     1381 aatgcctaga atgggagggg gcatgcctgg aatggcagga atgcctgggc tcaatgaaat
     1441 tcttagtgat ccagaggttc ttgcaggcat gcaggatcca gaagttatgg tggccttcca
     1501 ggatgtggct cagaacctgg caaatatgtc aaaatatcag agcaatccaa aagttatgaa
     1561 tctcatcagt aaattgtcag ccaaatttgg aagtcaagca taatgccctg ctgacaaata
     1621 aagcccctgc tgaaggaaaa gcaacttaga tcacttcatg gatgtcataa taacacaaac
     1681 cagtgtacct ctgactttct catgaagaaa gctggggtgc tttgaagata atctctaccc
     1741 ctctgcccca aatgc
//
LOCUS       XR_004346165            4067 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116741469
            (LOC116741469), ncRNA.
ACCESSION   XR_004346165
VERSION     XR_004346165.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4067
                     /gene="LOC116741469"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116741469"
     ncRNA           1..4067
                     /ncRNA_class="lncRNA"
                     /gene="LOC116741469"
                     /product="uncharacterized LOC116741469"
                     /db_xref="GeneID:116741469"
ORIGIN      
        1 catgagaaag agagagagag acacatagtc caaattcaag tctagatcgc atggtttgtg
       61 gagctgagtc acaggaccat accctagctg ggaaagccag aatgttcagc ttttccgagg
      121 agagatgatc ttgactccca ccaaggcttt caagattgtt tccagttagt gccgtcagaa
      181 ataatcatgt tgtggacatt atttaaaatt gtcttcccat ggtccccacc tgtggatatc
      241 cagcaatttt tgaaatccag ctcaagtgtc actatctctc ttctcttgac cccttccaca
      301 taccccaacc atatattaaa ctttttaaga atatgtcata ccttatttgg ttttgtctct
      361 ccatgaatag tgggaggcac aaggaacatt aagtttctgg agcaaaggtt agaaatctgt
      421 cagggtccac tgggcatctt attttccaaa ttcccacaca cagtaaatgt ggttagtaac
      481 aaatgcctga gaggacttcc ctggtggcac agtggttaat aatctgcctg ccaatgcaga
      541 ggccacagat tcgatccctg gtccgggaag atcccacatg ccttggagca actaagcctg
      601 tgcaccacaa ctactgagcc tgcggtctag agcctgcgag ccacaactac tgagcccaca
      661 tgccacaact actgaaaccc gcatgcctag agctggtgct ttgcaacaat ataagccacc
      721 acaacgggaa gtccacgcac tgcaacgaag attagccccc ctcaccgcaa ctagagaaag
      781 cccgcacaca gcaacaaaga ctcaacacag gcaaaaatga attaattaat caaaaaaaaa
      841 agaaatacct gagagacagt taaaaggcaa agctagtgtt ctcattgaaa taattacatg
      901 ataaactcaa agttaatgta cttatgatgc catagaagaa aaagtaagct tcaaagtaac
      961 ctcaacatac tgaaataaca agtttaaaca agaaaaagat aaaatatggg tttgtgctat
     1021 catccaagat gtctgatatt gtaacacaca ctcacaggtg cacaaatcaa tgaacgattt
     1081 cacataaaca ggaagtttct tgaaaaggga cagacttgga caaaatctgc ttcaataaaa
     1141 cttgcattta aaccttgata aacaacacac tgatttctca agagtttggt attggagaag
     1201 aagcaattgc taattgtatg tataatgaaa taagataaca aatgaaaaaa ttaatgtttt
     1261 agcaatacct attcagaatt cccagagtaa caaacatcat actgggcaca acttgttaga
     1321 gctgattacc tttagtttat tcttcatggg tccttttgtt taaaaagaat gtataaatat
     1381 ataaactgta gaaggaaaag gagacatagt gagacaaata tcgccagttt ctgattagat
     1441 gcaatgtctc cttgacctga ggaatacaga caggaaagaa ctcatgtaga gaaggtgaaa
     1501 agggaaaatt gagatcatga aagaaaaact ttcaattcac tattttgctt ggatctagac
     1561 ctaaagaacc ttcatgctga aatccttcag tggaggaaag tattgctttt gctatatctt
     1621 ttctagtgat ataaattcaa aaatttctga actgccaatc taatattctc cccaattcaa
     1681 actaacatta gaaaccagaa gaacatgaca atagatatta tagcattttg ttattcttat
     1741 gaatgatttt ccaaagacct gattcttcaa ttcactaagc aaaaccaatg attccagtct
     1801 gattctctgt ttagtctaca gatcatcttc ggggcaagca tttcaagaac atatgtcaat
     1861 tattagctga aaatctatta tatgccagag agtttagaaa ctaaaaatat gttcaaactt
     1921 atctctagtt actgtaactg atataacaat aacacaaaaa gaaaaaaatt ttactctaat
     1981 tcttccaaaa ataaaattaa tggttaaaaa tcatccattt tctactttct gtatttgcta
     2041 ttttcctttc aaagaatcat ataaaatagg ctcaactatg ccatcatcat cttgacacac
     2101 gtggccttca gtataattac cacagtgaat ttgtgccaaa actagacttc tccgatacta
     2161 taatatttga ggtggagcac agaggatttg tccacattgg tggcaagttc agcaccctaa
     2221 atatgtagca agatcatttc ttggtcttta ccagaattct ggccaaagtg gcaatgtgag
     2281 ggaagttgtt accaggtgct ttccactttc tcccctctca ggtaatgttt atgagaaccg
     2341 atctgttctc atccctcctt tcaagcctac ccacatgagt acaaattctc tacaatggcc
     2401 tcttgatttc caaagctatc tctatccctc agtgatctat ccaggtccac cttttctaat
     2461 gtaactatac tacaaaaacc attgattccc acaccacaga acacccattt ttgcttttat
     2521 atatataacc ggtttattta aataaatgta gatttcactt tctaatatgg atcttaatac
     2581 agttccttta accttctaat atgaactttg ttctttacct gtctccttat cattaatgga
     2641 caatcatgga tattatcaat ggtattttaa ttgttaataa taatttatat ttgttatact
     2701 tgggctatca aaaatatagc tgacattaat aacttaatag ctaacttatt ttgagcattt
     2761 actatatttc aggtcataga ggtagtaaat gttattaaac cgataccatg tggctccaga
     2821 gtctttgctt gaattctacc aagtttgaaa atcactcatt ataaactctg ttatagttcc
     2881 aagttctcat cctgctattg taaatgatga ggtacttcaa gaatctcaca atttagtctc
     2941 tcccctgaaa tcagctcttc atgatgctct gcttccagta atgacaacat cattcattca
     3001 ttcactcagc caagggaagc aaaatgtgtt tcagttcaac acagtctgtg ttcaacctaa
     3061 accagtcact gacttcatgg tcatctttaa cttcttcttc catcctccca catgcaagtt
     3121 ttatcagttc tttgtaagtc atgaaagtca aaaatttatt agatggctat aatctaacaa
     3181 tggaaaatga caagtgttga caaggatatg gagaaatgga accctcttgg attgttggtc
     3241 agtatgtaac atggtgcagt gcctttagaa aaaaaattga cagtttctcg gaaagttaaa
     3301 tgtagtttcc ctatgaccca ggacctctaa tcctaggtat atagccaaga taattgaaac
     3361 atatgtccaa acaaaaactt atacatgggt attcatagga gcattattta taatattcaa
     3421 aaagtgggaa aaaccccatt acttttgcta agtaatccaa tataatttga actaaatatc
     3481 actatctatg tactaagtta gcttttgaaa atagttttgt taattatttc tatttagtct
     3541 attgatttat aataatcatt aatgtaaaaa gcagccatta aaaatgtatg ggttaaaatt
     3601 tcagcaactt catagtaaag tcaacatatt ataatatgta ttgctacatt taaataaagt
     3661 gtattaattg ctaaattact taacattttc atgtagtaac ttgaaaagat aacttctttt
     3721 tattatactg taattatatc aactttggag aaaattcaca ctgtcattaa tatctctgcc
     3781 attatctcat cttacttgaa gtaggaaaat aaaatcattt tacaaaatta tgttgatttc
     3841 tgtaatggtc ttggaaaacc atagttttct tttccaaaaa tgtaaccaaa atgtctaagg
     3901 aaacaggagt ataaacttgc tgctgagtaa tcatttaaaa aaaaaaaaaa gatcagctgt
     3961 tgaaaattaa agattcactt gatttagaga gaacctttaa aatttttttt ggtgtttatt
     4021 atttcattac ttgtttaaat aattacaaaa ctcagtgtga tgcctaa
//
LOCUS       XM_032608048            3356 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 45 member 3
            (SLC45A3), transcript variant X1, mRNA.
ACCESSION   XM_032608048
VERSION     XM_032608048.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3356
                     /gene="SLC45A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741470"
     CDS             340..2001
                     /gene="SLC45A3"
                     /codon_start=1
                     /product="solute carrier family 45 member 3"
                     /protein_id="XP_032463939.1"
                     /db_xref="GeneID:116741470"
                     /translation="MVQRLWVSRLLRHRKAQLLLVNLLTFGLEVCLAAGITYVPPLLL
                     EVGVEEKFMTMVLGIGPVLGLVSVPLLGSASDHWRGRYGRRRPFIWALSLGVLLSLFL
                     IPRAGRLAGLLCPDTRPLELALLILGVGLLDFCGQVCFTPLEALLSDLFRDPDHCRQA
                     FSVYAFMISLGGCLGYLLPAVDWDASALAPYLGTQEECLFGLLALIFLTCVTATLFVA
                     EEAALGPAEPVEGLSVPSVPPHCCPCHARLAFWNLRALFPRLHQLCCRMPRTLRRLFV
                     AELCSWMAFMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGVRMGSLGLFLQCAI
                     SLLFSLVMDRLVQRFGTRAVYLASVVAFPVAAGATCLSRSVVVVTASAALTGFTFSAL
                     QILPYTLASLYHREKQVFLPKYRGDDGGGASEDSLMTSFSPGPKAGSPFPNGHAGAGG
                     SGLLPPPPALCGASACDVSMRTVVGEPPEARVVPGRGICLDLAVLDSAFLLSQVAPSL
                     FMGSIVQLSQSVTAYMVSAAGLGLVAIYFVTQVVFDKSDLAKYSV"
     misc_feature    391..1950
                     /gene="SLC45A3"
                     /note="Solute carrier family 45 and similar sugar
                     transporters of the Major Facilitator Superfamily of
                     transporters; Region: MFS_SLC45_SUC; cd17313"
                     /db_xref="CDD:340871"
     misc_feature    order(421..426,433..438,445..447,541..543,745..750,
                     754..762,769..771,832..834,841..846,853..855,1171..1173,
                     1180..1185,1192..1200,1207..1209,1342..1344,1354..1356,
                     1501..1506,1516..1518,1528..1530,1813..1815,1822..1827,
                     1834..1839,1846..1848)
                     /gene="SLC45A3"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:340871"
ORIGIN      
        1 ggagatttaa aagccgcccg ctggcgcgcg tcgggggagg cgcggggggg gacgagctcg
       61 cacgcgcggg ccccgggtga cagccgcgcg cctcggccag ctcttttagg atctgagtgt
      121 tgagttatgt ccccaccgag gcaccccacg acgacagaca ggcggttagc atggctgaga
      181 aactagacct gcacggaggg cccgcagaaa tgggtttctg gctgagtcct gcgcggtcgg
      241 tggcagcaag gaggagaggc ctaggcgtct ggagcaaggc tgaggtggag cagtcctgga
      301 gtgtgtgaac aggccggagc cccacccgcc tggcacatca tggtccagag gctgtgggtg
      361 agccgcctgc tgcggcatcg gaaagcccag ctcctgctgg tcaacctgct gaccttcggc
      421 ctggaggtgt gcctggctgc gggtatcacc tacgtgccac ccctgctgtt ggaagtgggg
      481 gtagaggaga agttcatgac catggtgctg ggcatcggtc cagtgctggg tctggtctcg
      541 gtcccactcc taggctcagc cagcgaccac tggcgtgggc gctatggtcg ccggaggccc
      601 ttcatctggg ccctgtccct gggtgtcctg ctgagcctct tcctcatccc gagggccggc
      661 cggctggcgg ggctgctgtg cccggacacc aggcccctgg agctggcact gctgatcctg
      721 ggcgtggggc tgctggactt ctgtggccag gtgtgcttca ctccgctgga ggccctgctc
      781 tctgacctct tccgggaccc agaccactgt cgccaggcgt tctccgtcta cgccttcatg
      841 atcagcctgg ggggctgcct gggctacctt ctgcctgccg tcgactggga tgccagtgcc
      901 ctggccccct acctgggcac ccaggaagag tgcctcttcg gcctgcttgc tctcatcttc
      961 ctcacttgcg tgacagccac actgtttgtg gctgaggagg cagcgctggg cccagccgag
     1021 cccgtggaag ggctgtcggt cccctctgta ccaccccact gctgcccgtg ccacgcccgc
     1081 ctggctttct ggaacctgcg cgccctcttt ccccggctgc accagctctg ttgccgcatg
     1141 cctcgcaccc tacgccgact cttcgtggcc gagctgtgca gttggatggc attcatgacc
     1201 ttcacactgt tttacacaga ctttgtgggc gaggggctgt accagggtgt gcccagggct
     1261 gagccaggca ccgaggcccg gagacactat gatgaagggg tccggatggg cagcctgggg
     1321 ctgttcctgc agtgtgctat ctccctgctc ttctctctgg tcatggaccg gctggtgcag
     1381 cgattcggca cccgggcagt ctatctggcc agcgtggtgg ctttccccgt ggctgccggc
     1441 gctacgtgcc tgtcccgcag cgtggtggtg gtgaccgcgt cggctgccct cactgggttc
     1501 accttctctg ccctgcagat cctgccgtac acgctagcgt ctctctacca ccgggagaag
     1561 caggttttcc tgcccaaata ccgcggagat gatggaggcg gtgccagtga ggacagcctg
     1621 atgaccagct tctcgccggg ccctaaggcc ggatctccct tccccaatgg acacgcgggt
     1681 gctggaggca gcggcctgct ccctcctcca ccagcactct gcggggcctc tgcctgcgat
     1741 gtctccatgc gtacagtggt gggcgagcca ccggaggcca gggttgttcc gggccggggc
     1801 atctgcctgg accttgccgt cctggacagt gccttcctgc tgtcccaggt ggccccgtct
     1861 ctctttatgg gctccattgt tcagctcagc cagtctgtca ctgcctatat ggtgtcggct
     1921 gcaggtctgg gtctggttgc catttacttt gtcacacagg tggtatttga caagagcgac
     1981 ttggccaaat actctgtgta gagtacttcc aacccattga gggaggacct gcctcactgg
     2041 gtcccagctc tccctattcc agtccgtccc ccgccccgct ccgttggccc ggtagggctg
     2101 tgggctggcc ttccagtttc tattgctgcc aaagtgatgt ggctctctgc tgccgccctg
     2161 tggcagtgag gtgtatagct gcacaagtag gggactgggg cttcttccct cccacctctc
     2221 ctcagtcttt agggctggct gactggaagc tctccagcag gcttcagtct ggacttccac
     2281 aaggaaagaa gggcagggca tttaattaac tctgtgcact ggaatgcagg actctgccgg
     2341 gggatcaccc aggctcaggg ttaacagcta gtgtcctggt tgagaaatac ccagagaagg
     2401 gatttgggga gctgagtaaa ctcagccacc tggtctccta caaccaaggc ctcttatccc
     2461 ataggttctc ccagttgttg ctcttgcatg ggaatttgta atgtgaaacg gctcctctac
     2521 aggatttgaa agtatgaaag ttattggggg acgcggtcct gaggggagaa gggaagctgc
     2581 ctagccccac agcgccacct ctctcctgtt ccccctcccc tgcattttat taggacttgg
     2641 cttgttggcc cctgtgttgc catcacaggg acacgggttt ttaaataatt aacttattta
     2701 tttaagtaga aggggaatca aggtgtttag gggttgggta ggatgagatc cctaatgact
     2761 aggtcccctg agacgattgg ttattgggct gagaattgtc agaatctcct tctcctggag
     2821 tgattggtct ggccccagaa ctgcctaacc ctgagcctgg aagctctgct taccccaact
     2881 gatatcccaa atcctgttac ccaaggcggg gagggctggg gaaacgtgaa gggtggggct
     2941 tcaggtctca gcagcccccg tagcctcacc tcccctcttg gccctgccgt cccccccagc
     3001 tcccctctgc tccctctagg actgggctga cgaaggagct gcccaacccc acctttcccc
     3061 actggctcca cagccctctc cttggggctg ttttgggacc agaagcacag agtgtggctc
     3121 cttgagcctt tatccgtctc agcccccagg gcatatctgt gcttggggaa tctagcacag
     3181 aaactcagga gcaccccctg cctgggctaa ggaggtctta tctccggggg ctttaagtgc
     3241 cgtttgcaat aatgttatgt cttatttatt tagtggagta aatattttat actgtatgtg
     3301 agcagtcaga gtataatgtt tatggtgatg aaattaaagc cttcttatat gtttaa
//
LOCUS       XM_032608057            3313 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 45 member 3
            (SLC45A3), transcript variant X2, mRNA.
ACCESSION   XM_032608057
VERSION     XM_032608057.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3313
                     /gene="SLC45A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741470"
     CDS             297..1958
                     /gene="SLC45A3"
                     /codon_start=1
                     /product="solute carrier family 45 member 3"
                     /protein_id="XP_032463948.1"
                     /db_xref="GeneID:116741470"
                     /translation="MVQRLWVSRLLRHRKAQLLLVNLLTFGLEVCLAAGITYVPPLLL
                     EVGVEEKFMTMVLGIGPVLGLVSVPLLGSASDHWRGRYGRRRPFIWALSLGVLLSLFL
                     IPRAGRLAGLLCPDTRPLELALLILGVGLLDFCGQVCFTPLEALLSDLFRDPDHCRQA
                     FSVYAFMISLGGCLGYLLPAVDWDASALAPYLGTQEECLFGLLALIFLTCVTATLFVA
                     EEAALGPAEPVEGLSVPSVPPHCCPCHARLAFWNLRALFPRLHQLCCRMPRTLRRLFV
                     AELCSWMAFMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGVRMGSLGLFLQCAI
                     SLLFSLVMDRLVQRFGTRAVYLASVVAFPVAAGATCLSRSVVVVTASAALTGFTFSAL
                     QILPYTLASLYHREKQVFLPKYRGDDGGGASEDSLMTSFSPGPKAGSPFPNGHAGAGG
                     SGLLPPPPALCGASACDVSMRTVVGEPPEARVVPGRGICLDLAVLDSAFLLSQVAPSL
                     FMGSIVQLSQSVTAYMVSAAGLGLVAIYFVTQVVFDKSDLAKYSV"
     misc_feature    348..1907
                     /gene="SLC45A3"
                     /note="Solute carrier family 45 and similar sugar
                     transporters of the Major Facilitator Superfamily of
                     transporters; Region: MFS_SLC45_SUC; cd17313"
                     /db_xref="CDD:340871"
     misc_feature    order(378..383,390..395,402..404,498..500,702..707,
                     711..719,726..728,789..791,798..803,810..812,1128..1130,
                     1137..1142,1149..1157,1164..1166,1299..1301,1311..1313,
                     1458..1463,1473..1475,1485..1487,1770..1772,1779..1784,
                     1791..1796,1803..1805)
                     /gene="SLC45A3"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:340871"
ORIGIN      
        1 ctcagcacca aggctcgcac gcgcgggccc cgggtgacag ccgcgcgcct cggccagctc
       61 ttttaggatc tgagtgttga gttatgtccc caccgaggca ccccacgacg acagacaggc
      121 ggttagcatg gctgagaaac tagacctgca cggagggccc gcagaaatgg gtttctggct
      181 gagtcctgcg cggtcggtgg cagcaaggag gagaggccta ggcgtctgga gcaaggctga
      241 ggtggagcag tcctggagtg tgtgaacagg ccggagcccc acccgcctgg cacatcatgg
      301 tccagaggct gtgggtgagc cgcctgctgc ggcatcggaa agcccagctc ctgctggtca
      361 acctgctgac cttcggcctg gaggtgtgcc tggctgcggg tatcacctac gtgccacccc
      421 tgctgttgga agtgggggta gaggagaagt tcatgaccat ggtgctgggc atcggtccag
      481 tgctgggtct ggtctcggtc ccactcctag gctcagccag cgaccactgg cgtgggcgct
      541 atggtcgccg gaggcccttc atctgggccc tgtccctggg tgtcctgctg agcctcttcc
      601 tcatcccgag ggccggccgg ctggcggggc tgctgtgccc ggacaccagg cccctggagc
      661 tggcactgct gatcctgggc gtggggctgc tggacttctg tggccaggtg tgcttcactc
      721 cgctggaggc cctgctctct gacctcttcc gggacccaga ccactgtcgc caggcgttct
      781 ccgtctacgc cttcatgatc agcctggggg gctgcctggg ctaccttctg cctgccgtcg
      841 actgggatgc cagtgccctg gccccctacc tgggcaccca ggaagagtgc ctcttcggcc
      901 tgcttgctct catcttcctc acttgcgtga cagccacact gtttgtggct gaggaggcag
      961 cgctgggccc agccgagccc gtggaagggc tgtcggtccc ctctgtacca ccccactgct
     1021 gcccgtgcca cgcccgcctg gctttctgga acctgcgcgc cctctttccc cggctgcacc
     1081 agctctgttg ccgcatgcct cgcaccctac gccgactctt cgtggccgag ctgtgcagtt
     1141 ggatggcatt catgaccttc acactgtttt acacagactt tgtgggcgag gggctgtacc
     1201 agggtgtgcc cagggctgag ccaggcaccg aggcccggag acactatgat gaaggggtcc
     1261 ggatgggcag cctggggctg ttcctgcagt gtgctatctc cctgctcttc tctctggtca
     1321 tggaccggct ggtgcagcga ttcggcaccc gggcagtcta tctggccagc gtggtggctt
     1381 tccccgtggc tgccggcgct acgtgcctgt cccgcagcgt ggtggtggtg accgcgtcgg
     1441 ctgccctcac tgggttcacc ttctctgccc tgcagatcct gccgtacacg ctagcgtctc
     1501 tctaccaccg ggagaagcag gttttcctgc ccaaataccg cggagatgat ggaggcggtg
     1561 ccagtgagga cagcctgatg accagcttct cgccgggccc taaggccgga tctcccttcc
     1621 ccaatggaca cgcgggtgct ggaggcagcg gcctgctccc tcctccacca gcactctgcg
     1681 gggcctctgc ctgcgatgtc tccatgcgta cagtggtggg cgagccaccg gaggccaggg
     1741 ttgttccggg ccggggcatc tgcctggacc ttgccgtcct ggacagtgcc ttcctgctgt
     1801 cccaggtggc cccgtctctc tttatgggct ccattgttca gctcagccag tctgtcactg
     1861 cctatatggt gtcggctgca ggtctgggtc tggttgccat ttactttgtc acacaggtgg
     1921 tatttgacaa gagcgacttg gccaaatact ctgtgtagag tacttccaac ccattgaggg
     1981 aggacctgcc tcactgggtc ccagctctcc ctattccagt ccgtcccccg ccccgctccg
     2041 ttggcccggt agggctgtgg gctggccttc cagtttctat tgctgccaaa gtgatgtggc
     2101 tctctgctgc cgccctgtgg cagtgaggtg tatagctgca caagtagggg actggggctt
     2161 cttccctccc acctctcctc agtctttagg gctggctgac tggaagctct ccagcaggct
     2221 tcagtctgga cttccacaag gaaagaaggg cagggcattt aattaactct gtgcactgga
     2281 atgcaggact ctgccggggg atcacccagg ctcagggtta acagctagtg tcctggttga
     2341 gaaataccca gagaagggat ttggggagct gagtaaactc agccacctgg tctcctacaa
     2401 ccaaggcctc ttatcccata ggttctccca gttgttgctc ttgcatggga atttgtaatg
     2461 tgaaacggct cctctacagg atttgaaagt atgaaagtta ttgggggacg cggtcctgag
     2521 gggagaaggg aagctgccta gccccacagc gccacctctc tcctgttccc cctcccctgc
     2581 attttattag gacttggctt gttggcccct gtgttgccat cacagggaca cgggttttta
     2641 aataattaac ttatttattt aagtagaagg ggaatcaagg tgtttagggg ttgggtagga
     2701 tgagatccct aatgactagg tcccctgaga cgattggtta ttgggctgag aattgtcaga
     2761 atctccttct cctggagtga ttggtctggc cccagaactg cctaaccctg agcctggaag
     2821 ctctgcttac cccaactgat atcccaaatc ctgttaccca aggcggggag ggctggggaa
     2881 acgtgaaggg tggggcttca ggtctcagca gcccccgtag cctcacctcc cctcttggcc
     2941 ctgccgtccc ccccagctcc cctctgctcc ctctaggact gggctgacga aggagctgcc
     3001 caaccccacc tttccccact ggctccacag ccctctcctt ggggctgttt tgggaccaga
     3061 agcacagagt gtggctcctt gagcctttat ccgtctcagc ccccagggca tatctgtgct
     3121 tggggaatct agcacagaaa ctcaggagca ccccctgcct gggctaagga ggtcttatct
     3181 ccgggggctt taagtgccgt ttgcaataat gttatgtctt atttatttag tggagtaaat
     3241 attttatact gtatgtgagc agtcagagta taatgtttat ggtgatgaaa ttaaagcctt
     3301 cttatatgtt taa
//
LOCUS       XM_032608065            3933 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 45 member 3
            (SLC45A3), transcript variant X3, mRNA.
ACCESSION   XM_032608065
VERSION     XM_032608065.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3933
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3933
                     /gene="SLC45A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741470"
     CDS             917..2578
                     /gene="SLC45A3"
                     /codon_start=1
                     /product="solute carrier family 45 member 3"
                     /protein_id="XP_032463956.1"
                     /db_xref="GeneID:116741470"
                     /translation="MVQRLWVSRLLRHRKAQLLLVNLLTFGLEVCLAAGITYVPPLLL
                     EVGVEEKFMTMVLGIGPVLGLVSVPLLGSASDHWRGRYGRRRPFIWALSLGVLLSLFL
                     IPRAGRLAGLLCPDTRPLELALLILGVGLLDFCGQVCFTPLEALLSDLFRDPDHCRQA
                     FSVYAFMISLGGCLGYLLPAVDWDASALAPYLGTQEECLFGLLALIFLTCVTATLFVA
                     EEAALGPAEPVEGLSVPSVPPHCCPCHARLAFWNLRALFPRLHQLCCRMPRTLRRLFV
                     AELCSWMAFMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGVRMGSLGLFLQCAI
                     SLLFSLVMDRLVQRFGTRAVYLASVVAFPVAAGATCLSRSVVVVTASAALTGFTFSAL
                     QILPYTLASLYHREKQVFLPKYRGDDGGGASEDSLMTSFSPGPKAGSPFPNGHAGAGG
                     SGLLPPPPALCGASACDVSMRTVVGEPPEARVVPGRGICLDLAVLDSAFLLSQVAPSL
                     FMGSIVQLSQSVTAYMVSAAGLGLVAIYFVTQVVFDKSDLAKYSV"
     misc_feature    968..2527
                     /gene="SLC45A3"
                     /note="Solute carrier family 45 and similar sugar
                     transporters of the Major Facilitator Superfamily of
                     transporters; Region: MFS_SLC45_SUC; cd17313"
                     /db_xref="CDD:340871"
     misc_feature    order(998..1003,1010..1015,1022..1024,1118..1120,
                     1322..1327,1331..1339,1346..1348,1409..1411,1418..1423,
                     1430..1432,1748..1750,1757..1762,1769..1777,1784..1786,
                     1919..1921,1931..1933,2078..2083,2093..2095,2105..2107,
                     2390..2392,2399..2404,2411..2416,2423..2425)
                     /gene="SLC45A3"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:340871"
ORIGIN      
        1 cgggagggag tttgatggat tactctgcag gccgagaggt ttctccctaa tcctcctttg
       61 tgttccggcc tgcaggcccc tcactctctc tgacaggctg ctaagcagaa gccttccagt
      121 ccgagtgaag aaaaggcagc gcagcagggc ggactctaaa tccctggcct ctgggccctg
      181 gggaggcagg agctagggag caagtctgga tgggggtggg gccttctctc tgctgatgtc
      241 ggggtggaaa ggctgcactc tgagtggggt tctcaggtgt ctatgggagc actgagaggt
      301 tgtgggtctt cgcttctcgt gcaaatcact gttgccttcg gtagggtagg cttgggggga
      361 gcagaccctt gcttctttgg aagtacgcgt ttgagctcag agaatcaaag actaaatatg
      421 tgttggaagg catggaagcc gtgcttagac tagtcctgtg tccccctctc cctagctgcc
      481 caggcagaaa ttcccacagc tcagcatccc tgatgagggg gtctgtcacg gtggagagct
      541 cattgcctca caaggatgtt catttcccgt ctgctgtctg gccagcacag gctctttctg
      601 ggctgtccca agactcctgt ggacctgccg tgagggcaga gctcattttg ggagtgcggt
      661 atgctgggat ttgcgagctc ttttaggatc tgagtgttga gttatgtccc caccgaggca
      721 ccccacgacg acagacaggc ggttagcatg gctgagaaac tagacctgca cggagggccc
      781 gcagaaatgg gtttctggct gagtcctgcg cggtcggtgg cagcaaggag gagaggccta
      841 ggcgtctgga gcaaggctga ggtggagcag tcctggagtg tgtgaacagg ccggagcccc
      901 acccgcctgg cacatcatgg tccagaggct gtgggtgagc cgcctgctgc ggcatcggaa
      961 agcccagctc ctgctggtca acctgctgac cttcggcctg gaggtgtgcc tggctgcggg
     1021 tatcacctac gtgccacccc tgctgttgga agtgggggta gaggagaagt tcatgaccat
     1081 ggtgctgggc atcggtccag tgctgggtct ggtctcggtc ccactcctag gctcagccag
     1141 cgaccactgg cgtgggcgct atggtcgccg gaggcccttc atctgggccc tgtccctggg
     1201 tgtcctgctg agcctcttcc tcatcccgag ggccggccgg ctggcggggc tgctgtgccc
     1261 ggacaccagg cccctggagc tggcactgct gatcctgggc gtggggctgc tggacttctg
     1321 tggccaggtg tgcttcactc cgctggaggc cctgctctct gacctcttcc gggacccaga
     1381 ccactgtcgc caggcgttct ccgtctacgc cttcatgatc agcctggggg gctgcctggg
     1441 ctaccttctg cctgccgtcg actgggatgc cagtgccctg gccccctacc tgggcaccca
     1501 ggaagagtgc ctcttcggcc tgcttgctct catcttcctc acttgcgtga cagccacact
     1561 gtttgtggct gaggaggcag cgctgggccc agccgagccc gtggaagggc tgtcggtccc
     1621 ctctgtacca ccccactgct gcccgtgcca cgcccgcctg gctttctgga acctgcgcgc
     1681 cctctttccc cggctgcacc agctctgttg ccgcatgcct cgcaccctac gccgactctt
     1741 cgtggccgag ctgtgcagtt ggatggcatt catgaccttc acactgtttt acacagactt
     1801 tgtgggcgag gggctgtacc agggtgtgcc cagggctgag ccaggcaccg aggcccggag
     1861 acactatgat gaaggggtcc ggatgggcag cctggggctg ttcctgcagt gtgctatctc
     1921 cctgctcttc tctctggtca tggaccggct ggtgcagcga ttcggcaccc gggcagtcta
     1981 tctggccagc gtggtggctt tccccgtggc tgccggcgct acgtgcctgt cccgcagcgt
     2041 ggtggtggtg accgcgtcgg ctgccctcac tgggttcacc ttctctgccc tgcagatcct
     2101 gccgtacacg ctagcgtctc tctaccaccg ggagaagcag gttttcctgc ccaaataccg
     2161 cggagatgat ggaggcggtg ccagtgagga cagcctgatg accagcttct cgccgggccc
     2221 taaggccgga tctcccttcc ccaatggaca cgcgggtgct ggaggcagcg gcctgctccc
     2281 tcctccacca gcactctgcg gggcctctgc ctgcgatgtc tccatgcgta cagtggtggg
     2341 cgagccaccg gaggccaggg ttgttccggg ccggggcatc tgcctggacc ttgccgtcct
     2401 ggacagtgcc ttcctgctgt cccaggtggc cccgtctctc tttatgggct ccattgttca
     2461 gctcagccag tctgtcactg cctatatggt gtcggctgca ggtctgggtc tggttgccat
     2521 ttactttgtc acacaggtgg tatttgacaa gagcgacttg gccaaatact ctgtgtagag
     2581 tacttccaac ccattgaggg aggacctgcc tcactgggtc ccagctctcc ctattccagt
     2641 ccgtcccccg ccccgctccg ttggcccggt agggctgtgg gctggccttc cagtttctat
     2701 tgctgccaaa gtgatgtggc tctctgctgc cgccctgtgg cagtgaggtg tatagctgca
     2761 caagtagggg actggggctt cttccctccc acctctcctc agtctttagg gctggctgac
     2821 tggaagctct ccagcaggct tcagtctgga cttccacaag gaaagaaggg cagggcattt
     2881 aattaactct gtgcactgga atgcaggact ctgccggggg atcacccagg ctcagggtta
     2941 acagctagtg tcctggttga gaaataccca gagaagggat ttggggagct gagtaaactc
     3001 agccacctgg tctcctacaa ccaaggcctc ttatcccata ggttctccca gttgttgctc
     3061 ttgcatggga atttgtaatg tgaaacggct cctctacagg atttgaaagt atgaaagtta
     3121 ttgggggacg cggtcctgag gggagaaggg aagctgccta gccccacagc gccacctctc
     3181 tcctgttccc cctcccctgc attttattag gacttggctt gttggcccct gtgttgccat
     3241 cacagggaca cgggttttta aataattaac ttatttattt aagtagaagg ggaatcaagg
     3301 tgtttagggg ttgggtagga tgagatccct aatgactagg tcccctgaga cgattggtta
     3361 ttgggctgag aattgtcaga atctccttct cctggagtga ttggtctggc cccagaactg
     3421 cctaaccctg agcctggaag ctctgcttac cccaactgat atcccaaatc ctgttaccca
     3481 aggcggggag ggctggggaa acgtgaaggg tggggcttca ggtctcagca gcccccgtag
     3541 cctcacctcc cctcttggcc ctgccgtccc ccccagctcc cctctgctcc ctctaggact
     3601 gggctgacga aggagctgcc caaccccacc tttccccact ggctccacag ccctctcctt
     3661 ggggctgttt tgggaccaga agcacagagt gtggctcctt gagcctttat ccgtctcagc
     3721 ccccagggca tatctgtgct tggggaatct agcacagaaa ctcaggagca ccccctgcct
     3781 gggctaagga ggtcttatct ccgggggctt taagtgccgt ttgcaataat gttatgtctt
     3841 atttatttag tggagtaaat attttatact gtatgtgagc agtcagagta taatgtttat
     3901 ggtgatgaaa ttaaagcctt cttatatgtt taa
//
LOCUS       XM_032608075            3396 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 45 member 3
            (SLC45A3), transcript variant X4, mRNA.
ACCESSION   XM_032608075
VERSION     XM_032608075.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3396
                     /gene="SLC45A3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741470"
     CDS             380..2041
                     /gene="SLC45A3"
                     /codon_start=1
                     /product="solute carrier family 45 member 3"
                     /protein_id="XP_032463966.1"
                     /db_xref="GeneID:116741470"
                     /translation="MVQRLWVSRLLRHRKAQLLLVNLLTFGLEVCLAAGITYVPPLLL
                     EVGVEEKFMTMVLGIGPVLGLVSVPLLGSASDHWRGRYGRRRPFIWALSLGVLLSLFL
                     IPRAGRLAGLLCPDTRPLELALLILGVGLLDFCGQVCFTPLEALLSDLFRDPDHCRQA
                     FSVYAFMISLGGCLGYLLPAVDWDASALAPYLGTQEECLFGLLALIFLTCVTATLFVA
                     EEAALGPAEPVEGLSVPSVPPHCCPCHARLAFWNLRALFPRLHQLCCRMPRTLRRLFV
                     AELCSWMAFMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGVRMGSLGLFLQCAI
                     SLLFSLVMDRLVQRFGTRAVYLASVVAFPVAAGATCLSRSVVVVTASAALTGFTFSAL
                     QILPYTLASLYHREKQVFLPKYRGDDGGGASEDSLMTSFSPGPKAGSPFPNGHAGAGG
                     SGLLPPPPALCGASACDVSMRTVVGEPPEARVVPGRGICLDLAVLDSAFLLSQVAPSL
                     FMGSIVQLSQSVTAYMVSAAGLGLVAIYFVTQVVFDKSDLAKYSV"
     misc_feature    431..1990
                     /gene="SLC45A3"
                     /note="Solute carrier family 45 and similar sugar
                     transporters of the Major Facilitator Superfamily of
                     transporters; Region: MFS_SLC45_SUC; cd17313"
                     /db_xref="CDD:340871"
     misc_feature    order(461..466,473..478,485..487,581..583,785..790,
                     794..802,809..811,872..874,881..886,893..895,1211..1213,
                     1220..1225,1232..1240,1247..1249,1382..1384,1394..1396,
                     1541..1546,1556..1558,1568..1570,1853..1855,1862..1867,
                     1874..1879,1886..1888)
                     /gene="SLC45A3"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:340871"
ORIGIN      
        1 tcacagtcct ttttgttgga tgggtctcat cctctcatgc ctcccttatc tcctccgcac
       61 aagcttgtct ggagctggga ctctgttgtt ctaaaagtgc tcagaaaaat ggagctcgag
      121 tcagcaggat ggatctgaag ctcttttagg atctgagtgt tgagttatgt ccccaccgag
      181 gcaccccacg acgacagaca ggcggttagc atggctgaga aactagacct gcacggaggg
      241 cccgcagaaa tgggtttctg gctgagtcct gcgcggtcgg tggcagcaag gaggagaggc
      301 ctaggcgtct ggagcaaggc tgaggtggag cagtcctgga gtgtgtgaac aggccggagc
      361 cccacccgcc tggcacatca tggtccagag gctgtgggtg agccgcctgc tgcggcatcg
      421 gaaagcccag ctcctgctgg tcaacctgct gaccttcggc ctggaggtgt gcctggctgc
      481 gggtatcacc tacgtgccac ccctgctgtt ggaagtgggg gtagaggaga agttcatgac
      541 catggtgctg ggcatcggtc cagtgctggg tctggtctcg gtcccactcc taggctcagc
      601 cagcgaccac tggcgtgggc gctatggtcg ccggaggccc ttcatctggg ccctgtccct
      661 gggtgtcctg ctgagcctct tcctcatccc gagggccggc cggctggcgg ggctgctgtg
      721 cccggacacc aggcccctgg agctggcact gctgatcctg ggcgtggggc tgctggactt
      781 ctgtggccag gtgtgcttca ctccgctgga ggccctgctc tctgacctct tccgggaccc
      841 agaccactgt cgccaggcgt tctccgtcta cgccttcatg atcagcctgg ggggctgcct
      901 gggctacctt ctgcctgccg tcgactggga tgccagtgcc ctggccccct acctgggcac
      961 ccaggaagag tgcctcttcg gcctgcttgc tctcatcttc ctcacttgcg tgacagccac
     1021 actgtttgtg gctgaggagg cagcgctggg cccagccgag cccgtggaag ggctgtcggt
     1081 cccctctgta ccaccccact gctgcccgtg ccacgcccgc ctggctttct ggaacctgcg
     1141 cgccctcttt ccccggctgc accagctctg ttgccgcatg cctcgcaccc tacgccgact
     1201 cttcgtggcc gagctgtgca gttggatggc attcatgacc ttcacactgt tttacacaga
     1261 ctttgtgggc gaggggctgt accagggtgt gcccagggct gagccaggca ccgaggcccg
     1321 gagacactat gatgaagggg tccggatggg cagcctgggg ctgttcctgc agtgtgctat
     1381 ctccctgctc ttctctctgg tcatggaccg gctggtgcag cgattcggca cccgggcagt
     1441 ctatctggcc agcgtggtgg ctttccccgt ggctgccggc gctacgtgcc tgtcccgcag
     1501 cgtggtggtg gtgaccgcgt cggctgccct cactgggttc accttctctg ccctgcagat
     1561 cctgccgtac acgctagcgt ctctctacca ccgggagaag caggttttcc tgcccaaata
     1621 ccgcggagat gatggaggcg gtgccagtga ggacagcctg atgaccagct tctcgccggg
     1681 ccctaaggcc ggatctccct tccccaatgg acacgcgggt gctggaggca gcggcctgct
     1741 ccctcctcca ccagcactct gcggggcctc tgcctgcgat gtctccatgc gtacagtggt
     1801 gggcgagcca ccggaggcca gggttgttcc gggccggggc atctgcctgg accttgccgt
     1861 cctggacagt gccttcctgc tgtcccaggt ggccccgtct ctctttatgg gctccattgt
     1921 tcagctcagc cagtctgtca ctgcctatat ggtgtcggct gcaggtctgg gtctggttgc
     1981 catttacttt gtcacacagg tggtatttga caagagcgac ttggccaaat actctgtgta
     2041 gagtacttcc aacccattga gggaggacct gcctcactgg gtcccagctc tccctattcc
     2101 agtccgtccc ccgccccgct ccgttggccc ggtagggctg tgggctggcc ttccagtttc
     2161 tattgctgcc aaagtgatgt ggctctctgc tgccgccctg tggcagtgag gtgtatagct
     2221 gcacaagtag gggactgggg cttcttccct cccacctctc ctcagtcttt agggctggct
     2281 gactggaagc tctccagcag gcttcagtct ggacttccac aaggaaagaa gggcagggca
     2341 tttaattaac tctgtgcact ggaatgcagg actctgccgg gggatcaccc aggctcaggg
     2401 ttaacagcta gtgtcctggt tgagaaatac ccagagaagg gatttgggga gctgagtaaa
     2461 ctcagccacc tggtctccta caaccaaggc ctcttatccc ataggttctc ccagttgttg
     2521 ctcttgcatg ggaatttgta atgtgaaacg gctcctctac aggatttgaa agtatgaaag
     2581 ttattggggg acgcggtcct gaggggagaa gggaagctgc ctagccccac agcgccacct
     2641 ctctcctgtt ccccctcccc tgcattttat taggacttgg cttgttggcc cctgtgttgc
     2701 catcacaggg acacgggttt ttaaataatt aacttattta tttaagtaga aggggaatca
     2761 aggtgtttag gggttgggta ggatgagatc cctaatgact aggtcccctg agacgattgg
     2821 ttattgggct gagaattgtc agaatctcct tctcctggag tgattggtct ggccccagaa
     2881 ctgcctaacc ctgagcctgg aagctctgct taccccaact gatatcccaa atcctgttac
     2941 ccaaggcggg gagggctggg gaaacgtgaa gggtggggct tcaggtctca gcagcccccg
     3001 tagcctcacc tcccctcttg gccctgccgt cccccccagc tcccctctgc tccctctagg
     3061 actgggctga cgaaggagct gcccaacccc acctttcccc actggctcca cagccctctc
     3121 cttggggctg ttttgggacc agaagcacag agtgtggctc cttgagcctt tatccgtctc
     3181 agcccccagg gcatatctgt gcttggggaa tctagcacag aaactcagga gcaccccctg
     3241 cctgggctaa ggaggtctta tctccggggg ctttaagtgc cgtttgcaat aatgttatgt
     3301 cttatttatt tagtggagta aatattttat actgtatgtg agcagtcaga gtataatgtt
     3361 tatggtgatg aaattaaagc cttcttatat gtttaa
//
LOCUS       XM_032608089            2302 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immunoglobulin superfamily member 8
            (IGSF8), transcript variant X1, mRNA.
ACCESSION   XM_032608089
VERSION     XM_032608089.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2302
                     /gene="IGSF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 7 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741481"
     CDS             199..2028
                     /gene="IGSF8"
                     /codon_start=1
                     /product="immunoglobulin superfamily member 8 isoform X1"
                     /protein_id="XP_032463980.1"
                     /db_xref="GeneID:116741481"
                     /translation="MGALGPKPPPLLLLLILGVGCCAREVLVPEGPLYRVAGTAISIS
                     CNVTGYEGPAQQDFEWFLYRPEAPEAALGIVSTRDTRFSYAVFGPRVAAGEVQVQRLQ
                     GDAVVLKIARLQAQDAGIYECYTPSTDAHYLGSYSGKVELRVLPDMLQVSAAPPGPRG
                     RQAPTSPPRLMVHEGQELALGCLARTSTEKHTHLAVSFGRAVPEAPVGRATLQEVVGL
                     RPDMAVEAGAPYAERLAAGELRLGKEGTERYRMVVGGAQADDAGTYHCTAAEWIQDPD
                     GSWAQIAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPTGRH
                     AAYSVGWEMAPAGAPGPGRLVAQLDTEGVGSLGPGYEGRHIAMEKVASRTYRLRLEAA
                     RPGDAGTYRCLAKAYVRGSGARLREAASARSRPLPVHVREEGVVLEAVAWLVGGTVYR
                     GETASLLCNISVRGGPPGLRLAASWWVERLEDGELSSAPAQLVGGVGQDGVAELGVRP
                     GGGPVSVELVGPRSHRLRLHGLGPEDEGVYHCAPSAWVQHADYSWYQAGSARSGPVTV
                     YPYTHALDTLFVPLLVGAGLALAIGATILGSITCCFMKRLQKR"
     misc_feature    268..633
                     /gene="IGSF8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    <658..1986
                     /gene="IGSF8"
                     /note="Acyl transferase domain in polyketide synthase
                     (PKS) enzymes [Secondary metabolites biosynthesis,
                     transport and catabolism]; Region: PksD; COG3321"
                     /db_xref="CDD:442550"
     misc_feature    1537..1821
                     /gene="IGSF8"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1558..1572
                     /gene="IGSF8"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1600..1626
                     /gene="IGSF8"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1765..1779
                     /gene="IGSF8"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1807..1821
                     /gene="IGSF8"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gagggaggag ggcagaggga agagggcaga gggaagaggg ccgtgacttg gcagctccag
       61 cttcgctcag cttcgctccg cgcacccacg cctcgctgcc ccgcttcgtg ccccccaccc
      121 gggcatgcgc cccccgaacc cccggccacc cagagcccgc gccgcccccc agagccttcg
      181 cagagccggc tgcgcagaat gggcgccctc ggtcccaagc cgccgccgct gctgctgctg
      241 ttaatcctgg gagtcgggtg ctgtgcccgg gaggtgctag tccctgaggg gcccctgtat
      301 cgcgtggctg gcacagccat ctccatctcc tgcaatgtca ctggctacga gggccctgct
      361 cagcaggact tcgagtggtt cctgtacagg cctgaggccc cagaggctgc cctgggcatt
      421 gtcagtacca gggatacccg attctcctat gctgtctttg ggccccgagt ggcagctggt
      481 gaggtacagg tgcagcgtct gcagggtgat gccgtggtgc tcaagattgc ccgcctgcag
      541 gcccaggatg ctggcattta cgagtgctac acaccctcca ctgatgccca ctacctgggc
      601 agctacagcg gcaaagtgga actgagagtt cttccagata tgctgcaggt gtctgctgcc
      661 cccccagggc cccggggccg tcaggccccg acttcacccc ctcgcctgat ggtgcacgag
      721 gggcaggagc tggcactggg ctgcctggca cggacgagca cggagaagca cacacacctc
      781 gccgtgtcct ttgggcgagc tgtgcccgag gcgccagtgg ggcgagcaac tctgcaggaa
      841 gtggtgggac tccggcccga catggccgtg gaggccggag ctccctatgc tgagcggctg
      901 gcggcagggg agctgcggct gggcaaggag gggactgagc gctaccgcat ggtggtgggg
      961 ggcgcccagg cggacgacgc aggcacctac cactgcactg ccgctgagtg gattcaggat
     1021 cccgatggca gctgggccca gattgcggag aagagggctg tcctggccca tgtggacgtg
     1081 cagacgctgt ccagccagct ggcagtgaca gtggggcctg gggaacgtcg gatcggcccg
     1141 ggggagccct tggagctgct gtgcaatgtg tcaggggccc tgcccccaac aggccgtcat
     1201 gccgcgtact ccgtgggctg ggagatggca cctgcagggg cacctgggcc cggccgcctg
     1261 gttgcccagc tggacacgga gggtgtgggc agcctgggcc ctggctacga gggccggcac
     1321 attgccatgg agaaggtggc ttccagaacc taccggctac ggctggaggc tgcccggcct
     1381 ggggatgcgg gcacctaccg ctgcctcgcc aaggcctatg tccgagggtc tggggcccgg
     1441 cttcgggaag ccgccagtgc ccgctcccgg cccctccccg tgcacgtgcg tgaggaaggt
     1501 gtggtgctgg aggctgtggc ctggctagtg ggaggcacag tgtaccgcgg ggagacggcc
     1561 tccctgctct gcaacatctc tgtgcggggc ggcccccccg ggctgcggct ggctgccagc
     1621 tggtgggtgg agaggctgga ggacggggag ctgagctctg cccctgccca gctggtgggt
     1681 ggcgtgggcc aggacggtgt ggcagagctg ggggtccggc ccggaggagg ccccgtcagc
     1741 gtggagctgg tggggccccg aagccatcgg ctgagactgc acggcttggg gcccgaggac
     1801 gaaggcgtgt accactgtgc ccccagcgcc tgggtgcagc acgccgacta cagctggtac
     1861 caggcaggca gtgcccgctc agggcctgtc acggtctacc cgtacacaca tgccctggac
     1921 accctgtttg tgcccctgct ggtgggtgca gggcttgccc tagccatcgg agccaccatc
     1981 ctgggctcca tcacctgctg cttcatgaag aggctgcaga aacggtgatc cctcacaccc
     2041 caggtgtgac tatcttccag cccagccgca agcccgcctc tggtgtctga ataccctctc
     2101 ccttcttcct gcccttcctt taatttattt gacctactcc cacccagagt gggggacacg
     2161 gcccccatgc cccactcctt ccttcccaag ctcctccctc tggccttctg ttcatgatct
     2221 catacatagc ccaacgggag gccgttccct gtcctagaat tagtttttct aaaatgtgaa
     2281 taaacttgtt ttataaaatc ca
//
LOCUS       XM_032608098            2324 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immunoglobulin superfamily member 8
            (IGSF8), transcript variant X2, mRNA.
ACCESSION   XM_032608098
VERSION     XM_032608098.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2324
                     /gene="IGSF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741481"
     CDS             189..2018
                     /gene="IGSF8"
                     /codon_start=1
                     /product="immunoglobulin superfamily member 8 isoform X1"
                     /protein_id="XP_032463989.1"
                     /db_xref="GeneID:116741481"
                     /translation="MGALGPKPPPLLLLLILGVGCCAREVLVPEGPLYRVAGTAISIS
                     CNVTGYEGPAQQDFEWFLYRPEAPEAALGIVSTRDTRFSYAVFGPRVAAGEVQVQRLQ
                     GDAVVLKIARLQAQDAGIYECYTPSTDAHYLGSYSGKVELRVLPDMLQVSAAPPGPRG
                     RQAPTSPPRLMVHEGQELALGCLARTSTEKHTHLAVSFGRAVPEAPVGRATLQEVVGL
                     RPDMAVEAGAPYAERLAAGELRLGKEGTERYRMVVGGAQADDAGTYHCTAAEWIQDPD
                     GSWAQIAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPTGRH
                     AAYSVGWEMAPAGAPGPGRLVAQLDTEGVGSLGPGYEGRHIAMEKVASRTYRLRLEAA
                     RPGDAGTYRCLAKAYVRGSGARLREAASARSRPLPVHVREEGVVLEAVAWLVGGTVYR
                     GETASLLCNISVRGGPPGLRLAASWWVERLEDGELSSAPAQLVGGVGQDGVAELGVRP
                     GGGPVSVELVGPRSHRLRLHGLGPEDEGVYHCAPSAWVQHADYSWYQAGSARSGPVTV
                     YPYTHALDTLFVPLLVGAGLALAIGATILGSITCCFMKRLQKR"
     misc_feature    258..623
                     /gene="IGSF8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    <648..1976
                     /gene="IGSF8"
                     /note="Acyl transferase domain in polyketide synthase
                     (PKS) enzymes [Secondary metabolites biosynthesis,
                     transport and catabolism]; Region: PksD; COG3321"
                     /db_xref="CDD:442550"
     misc_feature    1527..1811
                     /gene="IGSF8"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1548..1562
                     /gene="IGSF8"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1590..1616
                     /gene="IGSF8"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1755..1769
                     /gene="IGSF8"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1797..1811
                     /gene="IGSF8"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ggcagaggga agagggcaga gggaagaggg ccgtgacttg gcagctccag cttcgctcag
       61 cttcgctccg cgcacccacg cctcgctgcc ccgcttcgtg ccccccaccc gggcatgcgc
      121 cccccgaacc cccggccacc cagagcccgc gccgcccccc agagccttcg cagagccggc
      181 tgcgcagaat gggcgccctc ggtcccaagc cgccgccgct gctgctgctg ttaatcctgg
      241 gagtcgggtg ctgtgcccgg gaggtgctag tccctgaggg gcccctgtat cgcgtggctg
      301 gcacagccat ctccatctcc tgcaatgtca ctggctacga gggccctgct cagcaggact
      361 tcgagtggtt cctgtacagg cctgaggccc cagaggctgc cctgggcatt gtcagtacca
      421 gggatacccg attctcctat gctgtctttg ggccccgagt ggcagctggt gaggtacagg
      481 tgcagcgtct gcagggtgat gccgtggtgc tcaagattgc ccgcctgcag gcccaggatg
      541 ctggcattta cgagtgctac acaccctcca ctgatgccca ctacctgggc agctacagcg
      601 gcaaagtgga actgagagtt cttccagata tgctgcaggt gtctgctgcc cccccagggc
      661 cccggggccg tcaggccccg acttcacccc ctcgcctgat ggtgcacgag gggcaggagc
      721 tggcactggg ctgcctggca cggacgagca cggagaagca cacacacctc gccgtgtcct
      781 ttgggcgagc tgtgcccgag gcgccagtgg ggcgagcaac tctgcaggaa gtggtgggac
      841 tccggcccga catggccgtg gaggccggag ctccctatgc tgagcggctg gcggcagggg
      901 agctgcggct gggcaaggag gggactgagc gctaccgcat ggtggtgggg ggcgcccagg
      961 cggacgacgc aggcacctac cactgcactg ccgctgagtg gattcaggat cccgatggca
     1021 gctgggccca gattgcggag aagagggctg tcctggccca tgtggacgtg cagacgctgt
     1081 ccagccagct ggcagtgaca gtggggcctg gggaacgtcg gatcggcccg ggggagccct
     1141 tggagctgct gtgcaatgtg tcaggggccc tgcccccaac aggccgtcat gccgcgtact
     1201 ccgtgggctg ggagatggca cctgcagggg cacctgggcc cggccgcctg gttgcccagc
     1261 tggacacgga gggtgtgggc agcctgggcc ctggctacga gggccggcac attgccatgg
     1321 agaaggtggc ttccagaacc taccggctac ggctggaggc tgcccggcct ggggatgcgg
     1381 gcacctaccg ctgcctcgcc aaggcctatg tccgagggtc tggggcccgg cttcgggaag
     1441 ccgccagtgc ccgctcccgg cccctccccg tgcacgtgcg tgaggaaggt gtggtgctgg
     1501 aggctgtggc ctggctagtg ggaggcacag tgtaccgcgg ggagacggcc tccctgctct
     1561 gcaacatctc tgtgcggggc ggcccccccg ggctgcggct ggctgccagc tggtgggtgg
     1621 agaggctgga ggacggggag ctgagctctg cccctgccca gctggtgggt ggcgtgggcc
     1681 aggacggtgt ggcagagctg ggggtccggc ccggaggagg ccccgtcagc gtggagctgg
     1741 tggggccccg aagccatcgg ctgagactgc acggcttggg gcccgaggac gaaggcgtgt
     1801 accactgtgc ccccagcgcc tgggtgcagc acgccgacta cagctggtac caggcaggca
     1861 gtgcccgctc agggcctgtc acggtctacc cgtacacaca tgccctggac accctgtttg
     1921 tgcccctgct ggtgggtgca gggcttgccc tagccatcgg agccaccatc ctgggctcca
     1981 tcacctgctg cttcatgaag aggctgcaga aacggtgatc cctcacaccc cagccccctc
     2041 cacgtgcgtt ctcccgttcc tgcaggtgtg actatcttcc agcccagccg caagcccgcc
     2101 tctggtgtct gaataccctc tcccttcttc ctgcccttcc tttaatttat ttgacctact
     2161 cccacccaga gtgggggaca cggcccccat gccccactcc ttccttccca agctcctccc
     2221 tctggccttc tgttcatgat ctcatacata gcccaacggg aggccgttcc ctgtcctaga
     2281 attagttttt ctaaaatgtg aataaacttg ttttataaaa tcca
//
LOCUS       XM_032608106            2176 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immunoglobulin superfamily member 8
            (IGSF8), transcript variant X3, mRNA.
ACCESSION   XM_032608106
VERSION     XM_032608106.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2176
                     /gene="IGSF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741481"
     CDS             94..1902
                     /gene="IGSF8"
                     /codon_start=1
                     /product="immunoglobulin superfamily member 8 isoform X2"
                     /protein_id="XP_032463997.1"
                     /db_xref="GeneID:116741481"
                     /translation="MKSLAPENISRVGCCAREVLVPEGPLYRVAGTAISISCNVTGYE
                     GPAQQDFEWFLYRPEAPEAALGIVSTRDTRFSYAVFGPRVAAGEVQVQRLQGDAVVLK
                     IARLQAQDAGIYECYTPSTDAHYLGSYSGKVELRVLPDMLQVSAAPPGPRGRQAPTSP
                     PRLMVHEGQELALGCLARTSTEKHTHLAVSFGRAVPEAPVGRATLQEVVGLRPDMAVE
                     AGAPYAERLAAGELRLGKEGTERYRMVVGGAQADDAGTYHCTAAEWIQDPDGSWAQIA
                     EKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPTGRHAAYSVGW
                     EMAPAGAPGPGRLVAQLDTEGVGSLGPGYEGRHIAMEKVASRTYRLRLEAARPGDAGT
                     YRCLAKAYVRGSGARLREAASARSRPLPVHVREEGVVLEAVAWLVGGTVYRGETASLL
                     CNISVRGGPPGLRLAASWWVERLEDGELSSAPAQLVGGVGQDGVAELGVRPGGGPVSV
                     ELVGPRSHRLRLHGLGPEDEGVYHCAPSAWVQHADYSWYQAGSARSGPVTVYPYTHAL
                     DTLFVPLLVGAGLALAIGATILGSITCCFMKRLQKR"
     misc_feature    142..507
                     /gene="IGSF8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    <532..1860
                     /gene="IGSF8"
                     /note="Acyl transferase domain in polyketide synthase
                     (PKS) enzymes [Secondary metabolites biosynthesis,
                     transport and catabolism]; Region: PksD; COG3321"
                     /db_xref="CDD:442550"
     misc_feature    1411..1695
                     /gene="IGSF8"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1432..1446
                     /gene="IGSF8"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1474..1500
                     /gene="IGSF8"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1639..1653
                     /gene="IGSF8"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1681..1695
                     /gene="IGSF8"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ccagggtaaa tgtggtgcaa agagacagaa gagcttgccg agatgtgagc gccctgggtg
       61 taggtgctta actttcattt tgaagatgag gaaatgaagt cacttgcccc agagaacata
      121 tctagagtcg ggtgctgtgc ccgggaggtg ctagtccctg aggggcccct gtatcgcgtg
      181 gctggcacag ccatctccat ctcctgcaat gtcactggct acgagggccc tgctcagcag
      241 gacttcgagt ggttcctgta caggcctgag gccccagagg ctgccctggg cattgtcagt
      301 accagggata cccgattctc ctatgctgtc tttgggcccc gagtggcagc tggtgaggta
      361 caggtgcagc gtctgcaggg tgatgccgtg gtgctcaaga ttgcccgcct gcaggcccag
      421 gatgctggca tttacgagtg ctacacaccc tccactgatg cccactacct gggcagctac
      481 agcggcaaag tggaactgag agttcttcca gatatgctgc aggtgtctgc tgccccccca
      541 gggccccggg gccgtcaggc cccgacttca ccccctcgcc tgatggtgca cgaggggcag
      601 gagctggcac tgggctgcct ggcacggacg agcacggaga agcacacaca cctcgccgtg
      661 tcctttgggc gagctgtgcc cgaggcgcca gtggggcgag caactctgca ggaagtggtg
      721 ggactccggc ccgacatggc cgtggaggcc ggagctccct atgctgagcg gctggcggca
      781 ggggagctgc ggctgggcaa ggaggggact gagcgctacc gcatggtggt ggggggcgcc
      841 caggcggacg acgcaggcac ctaccactgc actgccgctg agtggattca ggatcccgat
      901 ggcagctggg cccagattgc ggagaagagg gctgtcctgg cccatgtgga cgtgcagacg
      961 ctgtccagcc agctggcagt gacagtgggg cctggggaac gtcggatcgg cccgggggag
     1021 cccttggagc tgctgtgcaa tgtgtcaggg gccctgcccc caacaggccg tcatgccgcg
     1081 tactccgtgg gctgggagat ggcacctgca ggggcacctg ggcccggccg cctggttgcc
     1141 cagctggaca cggagggtgt gggcagcctg ggccctggct acgagggccg gcacattgcc
     1201 atggagaagg tggcttccag aacctaccgg ctacggctgg aggctgcccg gcctggggat
     1261 gcgggcacct accgctgcct cgccaaggcc tatgtccgag ggtctggggc ccggcttcgg
     1321 gaagccgcca gtgcccgctc ccggcccctc cccgtgcacg tgcgtgagga aggtgtggtg
     1381 ctggaggctg tggcctggct agtgggaggc acagtgtacc gcggggagac ggcctccctg
     1441 ctctgcaaca tctctgtgcg gggcggcccc cccgggctgc ggctggctgc cagctggtgg
     1501 gtggagaggc tggaggacgg ggagctgagc tctgcccctg cccagctggt gggtggcgtg
     1561 ggccaggacg gtgtggcaga gctgggggtc cggcccggag gaggccccgt cagcgtggag
     1621 ctggtggggc cccgaagcca tcggctgaga ctgcacggct tggggcccga ggacgaaggc
     1681 gtgtaccact gtgcccccag cgcctgggtg cagcacgccg actacagctg gtaccaggca
     1741 ggcagtgccc gctcagggcc tgtcacggtc tacccgtaca cacatgccct ggacaccctg
     1801 tttgtgcccc tgctggtggg tgcagggctt gccctagcca tcggagccac catcctgggc
     1861 tccatcacct gctgcttcat gaagaggctg cagaaacggt gatccctcac accccaggtg
     1921 tgactatctt ccagcccagc cgcaagcccg cctctggtgt ctgaataccc tctcccttct
     1981 tcctgccctt cctttaattt atttgaccta ctcccaccca gagtggggga cacggccccc
     2041 atgccccact ccttccttcc caagctcctc cctctggcct tctgttcatg atctcataca
     2101 tagcccaacg ggaggccgtt ccctgtccta gaattagttt ttctaaaatg tgaataaact
     2161 tgttttataa aatcca
//
LOCUS       XM_032608118            8925 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity tyrosine phosphorylation
            regulated kinase 3 (DYRK3), transcript variant X1, mRNA.
ACCESSION   XM_032608118
VERSION     XM_032608118.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8925
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8925
                     /gene="DYRK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 15 long SRA reads, 12
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741489"
     CDS             162..1925
                     /gene="DYRK3"
                     /codon_start=1
                     /product="dual specificity
                     tyrosine-phosphorylation-regulated kinase 3 isoform X1"
                     /protein_id="XP_032464009.1"
                     /db_xref="GeneID:116741489"
                     /translation="MGGTARGPGRKDAGPPGAGLPPQQRRLGDGVYDTFVMIDETKCP
                     PCSNALCNPSEPPLPRRLNITTEHLTRDPTQRFLNGGEMKVEQLFQEFGNRRSDTFQS
                     DGVNDSEKCSPTVSQGKSSDSLNTVKSSSSSKAPKVLPLTPEQALKQYKHHLTAYEKL
                     EIISYPEIYFVGPNAKKRHGVIGGPNNGGYDDADGAYIHVPRDHLAYRYEVLKIIGKG
                     SFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLE
                     SFTFRNHVCMAFELLSIDLYELIKKNKFQGFSIQLVRKFAQSILQSLDALHKNKIIHC
                     DLKPENILLKHHGRSATKVIDFGSSCFEYQKLYTYIQSRFYRAPEIILGSRYSTPIDI
                     WSFGCILAELLTGQPLFPGEDEGDQLACMMELLGMPPPKLLEQSKRAKYFINSKGLPR
                     YCSVTTQADGRVVLVGGCSRRGKKRGPPGSKDWGTALKGCDDYLFIEFLKRCLHWDPS
                     ARLTPAQALRHPWISKSVPRPLTIEKVSGKRVVNPANAFPGLGSKLPPVVGIANKLKA
                     NLMSETSGGIPLCSVLPKLIS"
     misc_feature    588..1727
                     /gene="DYRK3"
                     /note="Catalytic domain of the protein kinases,
                     Dual-specificity tYrosine-phosphorylated and -Regulated
                     Kinases 2 and 3; Region: PKc_DYRK2_3; cd14224"
                     /db_xref="CDD:271126"
     misc_feature    order(804..818,828..830,867..869,873..875,915..917,
                     975..977,1023..1034,1041..1043,1047..1052,1164..1166,
                     1170..1172,1176..1181,1185..1187,1224..1226,1233..1235,
                     1260..1262,1266..1277,1281..1283,1392..1394)
                     /gene="DYRK3"
                     /note="active site"
                     /db_xref="CDD:271126"
     misc_feature    order(804..818,828..830,867..869,873..875,975..977,
                     1023..1034,1041..1043,1164..1166,1170..1172,1176..1181,
                     1185..1187,1224..1226)
                     /gene="DYRK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271126"
     misc_feature    order(915..917,1047..1049,1164..1166,1170..1172,
                     1233..1235,1260..1262,1266..1277,1281..1283,1392..1394)
                     /gene="DYRK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271126"
     misc_feature    1221..1283
                     /gene="DYRK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271126"
ORIGIN      
        1 agccagtccc gagcgacggc gcgcggagtt gcagtgtgtg caagagagtg ttaaccgagg
       61 aaacgtcgcg gcccgggagg cagccgccgc agcgcaggtg gacgctgctc gcctgaccgt
      121 ccaaccgccg cccctccctc cggggggtcc cgagctgacg gatgggaggc acagctcgcg
      181 ggcccgggcg gaaggatgcg gggccgccag gagccggact cccgccccag cagcggagat
      241 tgggtgatgg tgtctatgat accttcgtga tgatagatga aaccaaatgc ccaccctgtt
      301 caaatgcact ctgcaatcct tctgaaccac ctctacccag aagactaaat atcaccactg
      361 agcatttaac aagagatcct actcagcgct ttctgaatgg aggtgagatg aaggtagaac
      421 aactatttca agaatttggc aacagaagat ctgatacttt tcagtcagat ggcgtcaacg
      481 actctgaaaa atgctctcct acagtttctc agggtaaaag ttcagatagt ttgaatacag
      541 taaaatccag cagttcatcc aaagcaccca aagtgttgcc tctgactcca gaacaagcgc
      601 tgaagcaata taaacaccac ctcactgctt atgagaagct ggaaatcatc agttatccag
      661 aaatttactt tgtgggtcca aatgccaaaa aaagacatgg agttatcggt ggtcccaata
      721 atgggggtta cgatgatgca gacggggcct atattcacgt gcctcgagac catctagctt
      781 atcgatacga ggtgctgaaa attattggca agggcagttt tgggcaggta gcccgggtct
      841 atgatcacaa acttcggcag tacgtggccc tgaagatggt acgcaatgaa aagcgcttcc
      901 atcgccaagc agccgaggag atccggattt tggagcatct taaaaagcag gataaaaccg
      961 gtagcatgaa cgtcattcat atgctggaaa gtttcacgtt ccggaaccat gtttgcatgg
     1021 cctttgagtt gctgagcata gacctttatg aactcattaa aaaaaacaag ttccagggtt
     1081 ttagcatcca gttggttcgc aagtttgctc aatccatctt gcaatccttg gatgctctcc
     1141 acaaaaacaa gatcattcac tgtgacctga agccagaaaa cattctcctg aaacaccatg
     1201 ggcgcagtgc gactaaggtc attgactttg ggtccagctg ttttgagtac cagaagcttt
     1261 acacatatat ccagtctcgg ttctacagag ctccagagat catcttagga agccgctaca
     1321 gcacgcccat tgacatatgg agttttggct gcatccttgc agaactttta acaggacagc
     1381 ctctcttccc tggagaggat gaaggagacc agctggcctg tatgatggag cttctaggga
     1441 tgccaccacc aaaactcctg gagcaatcca aacgtgccaa gtactttatt aactccaagg
     1501 gcctacctcg ctactgttct gtgaccactc aggcagatgg gagggttgtg cttgtgggag
     1561 gttgttcacg gaggggtaag aagcgcggtc ccccaggcag caaagactgg gggacagcac
     1621 tgaaggggtg tgatgattac ttattcatag agtttttgaa aaggtgtctt cactgggacc
     1681 cctctgcccg cctcacccca gctcaagcac taagacaccc ttggattagc aagtctgtgc
     1741 ccagacctct caccattgaa aaggtgtcag gcaaaagggt agtaaatcct gcaaacgctt
     1801 tcccgggcct gggttccaag ctgcctccag ttgtaggaat agccaataag cttaaagcta
     1861 acttaatgtc agaaaccagt ggtggtatac ctctgtgcag tgtattgcca aaactgatta
     1921 gctaatggac agctggtgtg ctcagagatg atatgtaggt atttttaatt atcttgcaaa
     1981 cctgaaaatg gaaaaaaacc ccaagcccat tcatggatat ggttttggta gactagatat
     2041 ctttttttaa cgaggcaaag catttttata tgactgtaaa agaactcttg aagggctaat
     2101 tacctaacca gcttgtattg tccatcctgg gatacatagt aaaaggcatt ttataggtca
     2161 gtgcatcttt tgttattatc gtcaggtgtt catcaacctg tgtattattc tgttggttta
     2221 aatccgtttc tctcaaggta gatgatgtac cagaaagtat atcctgaaca ttcacttcta
     2281 gtctcccttg gcatctgttg cagagggtta atttgggaca tggccgtagt tatagatgag
     2341 actcaaagct agatctctgg caccagcagc ctgtcctgtg ggctcatgtt aggtgaaagg
     2401 gctcacagca gagtatgggg tgggagaagc tctgggaagc tgtgggtccc ctagaaaagt
     2461 ctcgtcactg ccttccaagt ggctcatttc tctgcccttc aatcctgtga tgcatggtgt
     2521 ttttattgta tgttgtcgtt actattttta tttattatta ttttgccact ggtttgtttc
     2581 ctgggcactc aaagcatttt acagacatct taccacttca caaagtactg gctttaaaac
     2641 aagtcatgca tccctcctcc catctctaag gaagataaag aagttcttgg ccccaaatga
     2701 cccagaacgt taaaggtaga atcagcctgc aaactgcagt tctgcatttc catggactct
     2761 ttccgtataa aagtgattgc tatcacataa ccctatctac agcttcattg ctttcgctcc
     2821 tctttccagc tatctgccac cttaatgtgc cacaattttc tcactttcag tttaaaccga
     2881 agactattcc ctagactggg agtgagcttc agatataaga agaaaatcca gaaactggtg
     2941 gtaatccatt tcattttttc tccacttcaa cgtcctctct ttttctctgc taagatttaa
     3001 acagtgaggg caggtgataa aactacttgc tagccagatg ccttattcag aaggacggtg
     3061 aaagggacag taactaactc actgctgcag ttttgctttc ttccccctgc cgtgcctcta
     3121 cttccaccct cctccaaaac aagagtccac ctgaactctg tcctgacagt gtgtccttca
     3181 gagtagaccg ttgctttctc taacactgtt ctcaggacta tccagttcca tttttgtgat
     3241 agaatttagt ctctacagat tccataaggt cggaacgagg ctgtttttgt cggacagcac
     3301 agtcacaaaa agaaggaaaa tgccatgggc atgttactta agggacttgt gccttaacca
     3361 aaagtattcc tcacagcaca ggctgtgaga acaaatgtcc agagcatggc cccaacctct
     3421 caggcacaag gaccacaggg cagagaaggg ttcagactgt gacctcagcc tcttaaaagg
     3481 gggatatcct ggtacttctg gggactgagc aagtggacta tttaaaacct taattatttc
     3541 ccctacccct agtttaggga aggcaatggc atatgcaact cctttcagcc ccctaactcc
     3601 tgctgagtgc tctaacttac agagaagttg tgtgaggctc ctgccttatc taggcagagc
     3661 atatggtgag gtggcctttc cagtcgttat ctgtgtggga gacctgctct cttaagcaaa
     3721 ctgtgttgaa aggaccgcag ccccagacgc atctgccacg tgcaggattt cgatgtttgt
     3781 gttgtcagtg agatgtctcc ttggtcagcc agcattgtgt gtgacttggg agagaaggga
     3841 gcctgtggct gaggttggca tgtggtctgt ttttgtgtag tgaatggacc atgaggttac
     3901 ggaacctggg ccaagcgaca ggatatagac aacccatgac attgtaccaa ttctagaaag
     3961 ctctgggagg gtgaatgggt gtgtttatgc ctaaatttgg caacctagag ggtgacgcag
     4021 agcagagtca ttcaagttgg catgactgtc ttctgcaggc cggttcaagt tcggggagag
     4081 tgggctgctc taaaacatgg catttgtgcc agatggattt gaggaggttt atgagtgtgt
     4141 ttcaagttta gggacaattg tagtttttag aagctgtcac cctttttcta gccactgtca
     4201 gatttttgct tggatccctg cccagccata gcactgaatg accaaattgg atcagagtta
     4261 gtacagagat tcaggctgtg tcttacagtt gctggattgt tcttcagcca ttttatcatt
     4321 tcagttaaac aggtcaagtt ggttgacttt tttttttttt aatatttatt tatttatttg
     4381 gttgtacagg gtcttagttg tggcaggcgg gctccctagt tgcagctcgt gggctcctta
     4441 gttgcggctc gccggatcct tagtagcagc gtgtgggctc cttagttgtg gcaggcagtc
     4501 tccttagttt tggcttgcag gcttcttagt tgtggctcac ccgttcctta gttgcggcac
     4561 gcgggctcct tagttgtggc atgcgaattc ttagttgcag catgcatgtg ggatctagtt
     4621 ccctgatcag ggctcgaacc tgggccccct gcattgggag cgtggggtct taaccactgt
     4681 gccaccagga aagtcccacc ttcttttatt gattttttgt tgtttttttt ttttttacag
     4741 tgtggagttg gagagcagaa aggtactcca aggtttgttc ctgggtgtgg gtttggggct
     4801 tggaactaca tttgtcgaat cacagtaaat gaagtagtat gcaacatcat gaatgaggaa
     4861 cactctgtat tgctatttgg aaacttgata tgaggctccc aatatcaaaa tcaatgcaac
     4921 tttctccagg ggtcagctat tcagaaaatc ttggcttcaa tagaaggtct aaggtatatg
     4981 ggcattcagg aggatctgcc cagtcttcca gacagaaaca tttccactat cgtgacaaag
     5041 ggatgagggc agtttggctg ggttgccttg ttccctgaag tgtgtgggta gaatggcttt
     5101 tgtaggtaga gggcagggac agggctgatt catctttgca acaccctcac ttgggagcag
     5161 cagccagcac cttccccacc cttcaccacc accatcatca ctccctcctc atctcacttg
     5221 gttcctctga atctggatcc catgattgtg tctcgttggc atcctcaatt ccccttcctc
     5281 cttgcccttc tcactgaact agcctcataa tccctcaaca tggaccaatt atacatctgg
     5341 attctcacct gcattgtcca cttttggggg aaaagattgt tcagttgtga aaatgggtat
     5401 cccacagaat accaggcaat gaacctgcag cattaactca tttgctactt ctgcaggatg
     5461 ggagttatta tccccactaa ccagataaga aaactgaggc tcggttagtt ctttttcggt
     5521 ggtagatttg aggagcatct tggggagata gaattattta tgccttactt gtttgtcagc
     5581 taagaatagc tgctgctatt ttaattttat aatgtcagtg tctttttgac gccccaccca
     5641 tcttgattaa attatcactt tatttggtca agattttttg gagccaatga gaaggatgac
     5701 agtagaaaac aaaagtgttt gttttcctta catctctgaa ggtgacaaaa tctggaagag
     5761 gaaattaggg tgaagtccca agtttctgat tgagctctag gaatgaggtg gcaggtttct
     5821 ttatatcatc tgttattatc attgtcacta gaatacaaag gtcattgaat cttactgcat
     5881 gagttagttt tatctttaac cattcagctc taagagaatg ccagaaactg tctgctaatt
     5941 gtcttccgtg tgtcttctcc atatcttact tctggagatg atgttcaggt tttttaaaga
     6001 tacactgttt ctaagttgag aaatgggaga aaccgtgttc taatgtattc cttgactgat
     6061 ctgtgagcac cgccttccca aagccttgcc agctactaca tggcttgtca gcagtccttt
     6121 gggtgtttcc caaagttcac tccaattcag taagagtcag cagtgaggtg tagcgcacaa
     6181 caggggctta gcagggaatg cagagatggg tgggtgatac ggtcccagct cttcctgacc
     6241 caaacttgct gtgactgact tttagccagt ccacttcagt gtcttcacta gcaggcagtg
     6301 gacttctctt gctactcaga gtgggctgtg ggccagacca gcctcattag catctcctgg
     6361 aaatgcagag tgccggcccc atcctaggcc ggccccatcc tagaccttat caatcagaat
     6421 ctgcccgtta gttaacaaga ttcccagggg gttcacgtgc acatcaaagt ttgagaactg
     6481 gattctgaaa tacacactaa caaccgtcat tctccccttg ccccaggaac gaataaagta
     6541 gtgaggagac ttgggtttga cgcctgactc cgaatatatt tcatctctga cttgggcaag
     6601 ctgcttcctc tggagcatcg caacattgag gtgtttctcc tgattcagga gaatgcagct
     6661 taaacgccca acacccacac aactctgacc cgacttttct aacggtaaag tgagaaacaa
     6721 aagccaggcc gcaaaggatg gagcgggggt cactgttttt cactttattt taatttatag
     6781 gaaaatttaa atacaattct aggtggaact tttaaacgtt tttaaaaaat tacttgaaaa
     6841 aaaaaaagca tttaagtcag atccatttgg ctttccttgc aaccttccca agctctttcc
     6901 attccaaact gccatccagg cagggactct tctcacccct cttattgatt tttaaattta
     6961 caaaatcaac cgagtttcca aattgttatt gacacagtac agagctgggt aggaatgttc
     7021 gttttatctc attcctaaaa tcatgttttt ctttgaacat ggaaaattgg ctaacccagc
     7081 taatacctgc tcattttatt agactccatc ccactttcta ccctcacagt gattgatctg
     7141 ttcatcgtgt gctatcacga tttctccttg tgttaagagt gcaggcttta cacgggcact
     7201 cccattcatc atgaagctct gagttaatcg gttgtgatgc taccgagcat gtgcagatga
     7261 tgagggttcg tttccatccg tgtaccagga gtgtgctcgc ctcttgtctt ctttcaagtt
     7321 gacctatgta gtcaatctcc catctcttct ttttgagaga gggtaattgg agaagggtta
     7381 tgtgaggcca ccttcttctg gtccggtatt tgacactgat aataatgaaa aggaaaatgc
     7441 aaccataacc taactatgat ataaagattc tgcttctgtc tcccaggggc tctgtgaaga
     7501 aggaaagagt ctaacccgca tctcctttcc cagatgaaat taatttatga ccatagtagt
     7561 atactttatt cctaggtgtt ttaaggtgcg gattgggaca gacaggttag ctggctaacg
     7621 tcattatatt ttagttttca tgacaccgaa tctgttaaga acgggctttc ttgcgtgatc
     7681 aaaaaacgga acaaaagatt aaacaaaaat ttcaactgtg aaacagtctg gatctgtagc
     7741 agctggtcat gttgaaactt tctgttttgc tgaattccta actaggcata attaaagtta
     7801 aatgcgaaat tttaggtagc agccgataaa ttgttctggg atttcctaac agaatactgc
     7861 tactacttta gtggatcatg gaaaactctt tctcatttac ttttgattat ttctctttca
     7921 tctattattc aatgtcatga acacggaagt tggaagagtg acaatgattg ttccagactg
     7981 cgtctgtatg ctttttctcc tttgagaatt aaggataaga gcttatcctt tgaaccaggt
     8041 agaactgccg gaacacgctc tcctctgtct cttcagtctc gccagaggtg accagtctgt
     8101 acagccctat aacttaatat gcacagagca actgcaggca tccacaacgt gaacaacctg
     8161 gagtcttcca aacaaggaga gagaggcaag gccagggatc agcaaatcaa ggaagagttg
     8221 tcctctgcca ggaatcagcc tctcagtttt taataatatt tttcatatcc tcttttcaac
     8281 ataacatgtc ccactttcac cttcaagctg tgcttcctaa agcccaagat tttaaaagaa
     8341 tttacttcca aacctggcct tcaaccagaa tgtgattagg ggtaatcctc tccaagtgtc
     8401 tgtcaaatta tgcctgctaa tttcagcgag aaaagttttt aagtgaaccc aaccatgtaa
     8461 ggactaaaag ctctctggtc cctgagagcc atagcccctg agataagcca gagctacaaa
     8521 tatatcgtct agactttaaa gaaaggatat gattcttaat atagctcagc aaccactaag
     8581 tgaagcccaa gctctcataa ttttttctat gacaggagaa gcctgcctga cagttgactc
     8641 gaaacattct caccccttct gctaccacag aaataaacta aaaagaaagg actcccctaa
     8701 atcaggccag atggtgacct gtggctattt cagctcagga tgtcagcctc taaagcatca
     8761 ggtttgaatc atttgggatc atgggattct atcattgttc acttgaatct gctgacacac
     8821 ttcctctgga aagcgcagtt tggcatggat gagtcagtgt ttttttgttt ttttttttaa
     8881 ttttaggttg ttcgtttttt aaaaaataaa aattgctttg agaat
//
LOCUS       XR_004346181            6966 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity tyrosine phosphorylation
            regulated kinase 3 (DYRK3), transcript variant X2, misc_RNA.
ACCESSION   XR_004346181
VERSION     XR_004346181.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6966
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6966
                     /gene="DYRK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 11 long SRA reads, 12
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741489"
     misc_RNA        1..6966
                     /gene="DYRK3"
                     /product="dual specificity tyrosine phosphorylation
                     regulated kinase 3, transcript variant X2"
                     /db_xref="GeneID:116741489"
ORIGIN      
        1 agtcccgagc gacggcgcgc ggagttgcag tgtgtgcaag agagtgttaa ccgaggaaac
       61 gtcgcggccc gggaggcagc cgccgcagcg caggtggacg ctgctcgcct gaccgtccaa
      121 ccgccgcccc tccctccggg gggtcccgag ctgacggatg ggaggcacag ctcgcgggcc
      181 cgggcggaag gatgcggggc cgccaggagc cggactcccg ccccagcagc ggagattggg
      241 tgatggtgtc tatgatacct tcgtgatgat agatgaaacc aaatgcccac cctgttcaaa
      301 tgcactctgc aatccttctg aaccacctct acccagaaga ctaaatatca ccactgagca
      361 tttaacaaga gatcctactc agcgctttct gaatggaggt gagatgaagg tagaacaact
      421 atttcaagaa tttggcaaca gaagatctga tacttttcag tcagatggcg tcaacgactc
      481 tgaaaaatgc tctcctacag tttctcaggg taaaagttca gatagtttga atacagtaaa
      541 atccagcagt tcatccaaag cacccaaagt gttgcctctg actccagaac aagcgctgaa
      601 gcaatataaa caccacctca ctgcttatga gaagctggaa atcatcagtt atccagaaat
      661 ttactttgtg ggtccaaatg ccaaaaaaag acatggagtt atcggtggtc ccaataatgg
      721 gggttacgat gatgcagacg gggcctatat tcacgtgcct cgagaccatc tagcttatcg
      781 atacgaggtg ctgaaaatta ttggcaaggg cagttttggg caggtagccc gggtctatga
      841 tcacaaactt cggcagtacg tggccctgaa gatggtacgc aatgaaaagc gcttccatcg
      901 ccaagcagcc gaggagatcc ggattttgga gcatcttaaa aagcaggata aaaccggtag
      961 catgaacgtc attcatatgc tggaaagttt cacgttccgg aaccatgttt gcatggcctt
     1021 tgagttgctg agcatagacc tttatgaact cattaaaaaa aacaagttcc agggttttag
     1081 catccagttg gttcgcaagt ttgctcaatc catcttgcaa tccttggatg ctctccacaa
     1141 aaacaagatc attcactgtg acctgaagcc agaaaacatt ctcctgaaac accatgggcg
     1201 cagtgcgact aaggtcattg actttgggtc cagctgtttt gagtaccaga agctttacac
     1261 atatatccag tctcggttct acagagctcc agagatcatc ttaggaagcc gctacagcac
     1321 gcccattgac atatggagtt ttggctgcat ccttgcagaa cttttaacag gacagcctct
     1381 cttccctgga gaggatgaag gagaccagct ggcctgtatg atggagcttc tagggatgcc
     1441 accaccaaaa ctcctggagc aatccaaacg tgccaagtac tttattaact ccaagggcct
     1501 acctcgctac tgttctgtga ccactcaggc agatgggagg gttgtgcttg tgggaggttg
     1561 ttcacggagg ggtaagaagc gcggtccccc aggcagcaaa gactggggga cagcactgaa
     1621 ggggtgtgat gattacttat tcatagagtt tttgaaaagg tgtcttcact gggacccctc
     1681 tgcccgcctc accccagctc aagcactaag acacccttgg attagcaagt ctgtgcccag
     1741 acctctcacc attgaaaagg tgtcaggcaa aagggtagta aatcctgcaa acgctttccc
     1801 gggcctgggt tccaagctgc ctccagttgt aggaatagcc aataagctta aagctaactt
     1861 aatgtcagaa accagtggtg gtatacctct gtgcagtgta ttgccaaaac tgattagcta
     1921 atggacagct ggtgtgctca gagatgatat gtaggtattt ttaattatct tgcaaacctg
     1981 aaaatggaaa aaaaccccaa gcccattcat ggatatggtt ttggtagact agatatcttt
     2041 ttttaacgag gcaaagcatt tttatatgac tgtaaaagaa ctcttgaagg gctaattacc
     2101 taaccagctt gtattgtcca tcctgggata catagtaaaa ggcattttat aggtcagtgc
     2161 atcttttgtt attatcgtca ggtgttcatc aacctgtgta ttattctgtt ggtttaaatc
     2221 cgtttctctc aaggtagatg atgtaccaga aagtatatcc tgaacattca cttctagtct
     2281 cccttggcat ctgttgcaga gggttaattt gggacatggc cgtagttata gatgagactc
     2341 aaagctagat ctctggcacc agcagcctgt cctgtgggct catgttaggt gaaagggctc
     2401 acagcagagt atggggtggg agaagctctg ggaagctgtg ggtcccctag aaaagtctcg
     2461 tcactgcctt ccaagtggct catttctctg cccttcaatc ctgtgatgca tggtgttttt
     2521 attgtatgtt gtcgttacta tttttattta ttattatttt gccactggtt tgtttcctgg
     2581 gcactcaaag cattttacag acatcttacc acttcacaaa gtactggctt taaaacaagt
     2641 catgcatccc tcctcccatc tctaaggaag ataaagaagt tcttggcccc aaatgaccca
     2701 gaacgttaaa gtttaaaccg aagactattc cctagactgg gagtgagctt cagatataag
     2761 aagaaaatcc agaaactggt gtgtggagtt ggagagcaga aaggtactcc aaggtttgtt
     2821 cctgggtgtg ggtttggggc ttggaactac atttgtcgaa tcacagtaaa tgaagtagta
     2881 tgcaacatca tgaatgagga acactctgta ttgctatttg gaaacttgat atgaggctcc
     2941 caatatcaaa atcaatgcaa ctttctccag gggtcagcta ttcagaaaat cttggcttca
     3001 atagaaggtc taaggtatat gggcattcag gaggatctgc ccagtcttcc agacagaaac
     3061 atttccacta tcgtgacaaa gggatgaggg cagtttggct gggttgcctt gttccctgaa
     3121 gtgtgtgggt agaatggctt ttgtaggtag agggcaggga cagggctgat tcatctttgc
     3181 aacaccctca cttgggagca gcagccagca ccttccccac ccttcaccac caccatcatc
     3241 actccctcct catctcactt ggttcctctg aatctggatc ccatgattgt gtctcgttgg
     3301 catcctcaat tccccttcct ccttgccctt ctcactgaac tagcctcata atccctcaac
     3361 atggaccaat tatacatctg gattctcacc tgcattgtcc acttttgggg gaaaagattg
     3421 ttcagttgtg aaaatgggta tcccacagaa taccaggcaa tgaacctgca gcattaactc
     3481 atttgctact tctgcaggat gggagttatt atccccacta accagataag aaaactgagg
     3541 ctcggttagt tctttttcgg tggtagattt gaggagcatc ttggggagat agaattattt
     3601 atgccttact tgtttgtcag ctaagaatag ctgctgctat tttaatttta taatgtcagt
     3661 gtctttttga cgccccaccc atcttgatta aattatcact ttatttggtc aagatttttt
     3721 ggagccaatg agaaggatga cagtagaaaa caaaagtgtt tgttttcctt acatctctga
     3781 aggtgacaaa atctggaaga ggaaattagg gtgaagtccc aagtttctga ttgagctcta
     3841 ggaatgaggt ggcaggtttc tttatatcat ctgttattat cattgtcact agaatacaaa
     3901 ggtcattgaa tcttactgca tgagttagtt ttatctttaa ccattcagct ctaagagaat
     3961 gccagaaact gtctgctaat tgtcttccgt gtgtcttctc catatcttac ttctggagat
     4021 gatgttcagg ttttttaaag atacactgtt tctaagttga gaaatgggag aaaccgtgtt
     4081 ctaatgtatt ccttgactga tctgtgagca ccgccttccc aaagccttgc cagctactac
     4141 atggcttgtc agcagtcctt tgggtgtttc ccaaagttca ctccaattca gtaagagtca
     4201 gcagtgaggt gtagcgcaca acaggggctt agcagggaat gcagagatgg gtgggtgata
     4261 cggtcccagc tcttcctgac ccaaacttgc tgtgactgac ttttagccag tccacttcag
     4321 tgtcttcact agcaggcagt ggacttctct tgctactcag agtgggctgt gggccagacc
     4381 agcctcatta gcatctcctg gaaatgcaga gtgccggccc catcctaggc cggccccatc
     4441 ctagacctta tcaatcagaa tctgcccgtt agttaacaag attcccaggg ggttcacgtg
     4501 cacatcaaag tttgagaact ggattctgaa atacacacta acaaccgtca ttctcccctt
     4561 gccccaggaa cgaataaagt agtgaggaga cttgggtttg acgcctgact ccgaatatat
     4621 ttcatctctg acttgggcaa gctgcttcct ctggagcatc gcaacattga ggtgtttctc
     4681 ctgattcagg agaatgcagc ttaaacgccc aacacccaca caactctgac ccgacttttc
     4741 taacggtaaa gtgagaaaca aaagccaggc cgcaaaggat ggagcggggg tcactgtttt
     4801 tcactttatt ttaatttata ggaaaattta aatacaattc taggtggaac ttttaaacgt
     4861 ttttaaaaaa ttacttgaaa aaaaaaaagc atttaagtca gatccatttg gctttccttg
     4921 caaccttccc aagctctttc cattccaaac tgccatccag gcagggactc ttctcacccc
     4981 tcttattgat ttttaaattt acaaaatcaa ccgagtttcc aaattgttat tgacacagta
     5041 cagagctggg taggaatgtt cgttttatct cattcctaaa atcatgtttt tctttgaaca
     5101 tggaaaattg gctaacccag ctaatacctg ctcattttat tagactccat cccactttct
     5161 accctcacag tgattgatct gttcatcgtg tgctatcacg atttctcctt gtgttaagag
     5221 tgcaggcttt acacgggcac tcccattcat catgaagctc tgagttaatc ggttgtgatg
     5281 ctaccgagca tgtgcagatg atgagggttc gtttccatcc gtgtaccagg agtgtgctcg
     5341 cctcttgtct tctttcaagt tgacctatgt agtcaatctc ccatctcttc tttttgagag
     5401 agggtaattg gagaagggtt atgtgaggcc accttcttct ggtccggtat ttgacactga
     5461 taataatgaa aaggaaaatg caaccataac ctaactatga tataaagatt ctgcttctgt
     5521 ctcccagggg ctctgtgaag aaggaaagag tctaacccgc atctcctttc ccagatgaaa
     5581 ttaatttatg accatagtag tatactttat tcctaggtgt tttaaggtgc ggattgggac
     5641 agacaggtta gctggctaac gtcattatat tttagttttc atgacaccga atctgttaag
     5701 aacgggcttt cttgcgtgat caaaaaacgg aacaaaagat taaacaaaaa tttcaactgt
     5761 gaaacagtct ggatctgtag cagctggtca tgttgaaact ttctgttttg ctgaattcct
     5821 aactaggcat aattaaagtt aaatgcgaaa ttttaggtag cagccgataa attgttctgg
     5881 gatttcctaa cagaatactg ctactacttt agtggatcat ggaaaactct ttctcattta
     5941 cttttgatta tttctctttc atctattatt caatgtcatg aacacggaag ttggaagagt
     6001 gacaatgatt gttccagact gcgtctgtat gctttttctc ctttgagaat taaggataag
     6061 agcttatcct ttgaaccagg tagaactgcc ggaacacgct ctcctctgtc tcttcagtct
     6121 cgccagaggt gaccagtctg tacagcccta taacttaata tgcacagagc aactgcaggc
     6181 atccacaacg tgaacaacct ggagtcttcc aaacaaggag agagaggcaa ggccagggat
     6241 cagcaaatca aggaagagtt gtcctctgcc aggaatcagc ctctcagttt ttaataatat
     6301 ttttcatatc ctcttttcaa cataacatgt cccactttca ccttcaagct gtgcttccta
     6361 aagcccaaga ttttaaaaga atttacttcc aaacctggcc ttcaaccaga atgtgattag
     6421 gggtaatcct ctccaagtgt ctgtcaaatt atgcctgcta atttcagcga gaaaagtttt
     6481 taagtgaacc caaccatgta aggactaaaa gctctctggt ccctgagagc catagcccct
     6541 gagataagcc agagctacaa atatatcgtc tagactttaa agaaaggata tgattcttaa
     6601 tatagctcag caaccactaa gtgaagccca agctctcata attttttcta tgacaggaga
     6661 agcctgcctg acagttgact cgaaacattc tcaccccttc tgctaccaca gaaataaact
     6721 aaaaagaaag gactccccta aatcaggcca gatggtgacc tgtggctatt tcagctcagg
     6781 atgtcagcct ctaaagcatc aggtttgaat catttgggat catgggattc tatcattgtt
     6841 cacttgaatc tgctgacaca cttcctctgg aaagcgcagt ttggcatgga tgagtcagtg
     6901 tttttttgtt ttttttttta attttaggtt gttcgttttt taaaaaataa aaattgcttt
     6961 gagaat
//
LOCUS       XR_004346182            5367 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity tyrosine phosphorylation
            regulated kinase 3 (DYRK3), transcript variant X3, misc_RNA.
ACCESSION   XR_004346182
VERSION     XR_004346182.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5367
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5367
                     /gene="DYRK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 long SRA reads, 12
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741489"
     misc_RNA        1..5367
                     /gene="DYRK3"
                     /product="dual specificity tyrosine phosphorylation
                     regulated kinase 3, transcript variant X3"
                     /db_xref="GeneID:116741489"
ORIGIN      
        1 agtcccgagc gacggcgcgc ggagttgcag tgtgtgcaag agagtgttaa ccgaggaaac
       61 gtcgcggccc gggaggcagc cgccgcagcg caggtggacg ctgctcgcct gaccgtccaa
      121 ccgccgcccc tccctccggg gggtcccgag ctgacggatg ggaggcacag ctcgcgggcc
      181 cgggcggaag gatgcggggc cgccaggagc cggactcccg ccccagcagc ggagattggg
      241 tgatggtgtc tatgatacct tcgtgatgat agatgaaacc aaatgcccac cctgttcaaa
      301 tgcactctgc aatccttctg aaccacctct acccagaaga ctaaatatca ccactgagca
      361 tttaacaaga gatcctactc agcgctttct gaatggaggt gagatgaagg tagaacaact
      421 atttcaagaa tttggcaaca gaagatctga tacttttcag tcagatggcg tcaacgactc
      481 tgaaaaatgc tctcctacag tttctcaggg taaaagttca gatagtttga atacagtaaa
      541 atccagcagt tcatccaaag cacccaaagt gttgcctctg actccagaac aagcgctgaa
      601 gcaatataaa caccacctca ctgcttatga gaagctggaa atcatcagtt atccagaaat
      661 ttactttgtg ggtccaaatg ccaaaaaaag acatggagtt atcggtggtc ccaataatgg
      721 gggttacgat gatgcagacg gggcctatat tcacgtgcct cgagaccatc tagcttatcg
      781 atacgaggtg ctgaaaatta ttggcaaggg cagttttggg caggtagccc gggtctatga
      841 tcacaaactt cggcagtacg tggccctgaa gatggtacgc aatgaaaagc gcttccatcg
      901 ccaagcagcc gaggagatcc ggattttgga gcatcttaaa aagcaggata aaaccggtag
      961 catgaacgtc attcatatgc tggaaagttt cacgttccgg aaccatgttt gcatggcctt
     1021 tgagttgctg agcatagacc tttatgaact cattaaaaaa aacaagttcc agggttttag
     1081 catccagttg gttcgcaagt ttgctcaatc catcttgcaa tccttggatg ctctccacaa
     1141 aaacaagatc attcactgtg acctgaagcc agaaaacatt ctcctgaaac accatgggcg
     1201 cagtgcgact aaggtcattg actttgggtc cagctgtttt gagtaccaga agctttacac
     1261 atatatccag tctcggttct acagagctcc agagatcatc ttaggaagcc gctacagcac
     1321 gcccattgac atatggagtt ttggctgcat ccttgcagaa cttttaacag gacagcctct
     1381 cttccctgga gaggatgaag gagaccagct ggcctgtatg atggagcttc tagggatgcc
     1441 accaccaaaa ctcctggagc aatccaaacg tgccaagtac tttattaact ccaagggcct
     1501 acctcgctac tgttctgtga ccactcaggc agatgggagg gttgtgcttg tgggaggttg
     1561 ttcacggagg ggtaagaagc gcggtccccc aggcagcaaa gactggggga cagcactgaa
     1621 ggggtgtgat gattacttat tcatagagtt tttgaaaagg tgtcttcact gggacccctc
     1681 tgcccgcctc accccagctc aagcactaag acacccttgg attagcaagt ctgtgcccag
     1741 acctctcacc attgaaaagg tgtcaggcaa aagggtagta aatcctgcaa acgctttccc
     1801 gggcctgggt tccaagctgc ctccagttgt aggaatagcc aataagctta aagctaactt
     1861 aatgtcagaa accagtggtg gtatacctct gtgcagtgta ttgccaaaac tgattagcta
     1921 atggacagct ggtgtgctca gagatgatat gtaggtattt ttaattatct tgcaaacctg
     1981 aaaatggaaa aaaaccccaa gcccattcat ggatatggtt ttggtagact agatatcttt
     2041 ttttaacgag gcaaagcatt tttatatgac tgtaaaagaa ctcttgaagg gctaattacc
     2101 taaccagctt gtattgtcca tcctgggata catagtaaaa ggcattttat aggtcagtgc
     2161 atcttttgtt attatcgtca ggtgttcatc aacctgtgta ttattctgtt ggtttaaatc
     2221 cgtttctctc aaggtagatg atgtaccaga aagtatatcc tgaacattca cttctagtct
     2281 cccttggcat ctgttgcaga gggttaattt gggacatggc cgtagttata gatgagactc
     2341 aaagctagat ctctggcacc agcagcctgt cctgtgggct catgttaggt gaaagggctc
     2401 acagcagagt atggggtggg agaagctctg ggaagctgtg ggtcccctag aaaagtctcg
     2461 tcactgcctt ccaagtggct catttctctg cccttcaatc ctgtgatgca tggtgttttt
     2521 attgtatgtt gtcgttacta tttttattta ttattatttt gccactggtt tgtttcctgg
     2581 gcactcaaag cattttacag acatcttacc acttcacaaa gtactggctt taaaacaagt
     2641 catgcatccc tcctcccatc tctaaggaag ataaagaagt tcttggcccc aaatgaccca
     2701 gaacgttaaa ggtagaatca gcctgcaaac tgcagttctg catttccatg gactctttcc
     2761 gtataaaagt gattgctatc acataaccct atctacagct tcattgcttt cgctcctctt
     2821 tccagctatc tgccacctta atgtgccaca attttctcac tttcagttta aaccgaagac
     2881 tattccctag actgggagtg agcttcagat ataagaagaa aatccagaaa ctggtgtgtg
     2941 gagttggaga gcagaaaggt actccaagga acgaataaag tagtgaggag acttgggttt
     3001 gacgcctgac tccgaatata tttcatctct gacttgggca agctgcttcc tctggagcat
     3061 cgcaacattg aggtgtttct cctgattcag gagaatgcag cttaaacgcc caacacccac
     3121 acaactctga cccgactttt ctaacggtaa agtgagaaac aaaagccagg ccgcaaagga
     3181 tggagcgggg gtcactgttt ttcactttat tttaatttat aggaaaattt aaatacaatt
     3241 ctaggtggaa cttttaaacg tttttaaaaa attacttgaa aaaaaaaaag catttaagtc
     3301 agatccattt ggctttcctt gcaaccttcc caagctcttt ccattccaaa ctgccatcca
     3361 ggcagggact cttctcaccc ctcttattga tttttaaatt tacaaaatca accgagtttc
     3421 caaattgtta ttgacacagt acagagctgg gtaggaatgt tcgttttatc tcattcctaa
     3481 aatcatgttt ttctttgaac atggaaaatt ggctaaccca gctaatacct gctcatttta
     3541 ttagactcca tcccactttc taccctcaca gtgattgatc tgttcatcgt gtgctatcac
     3601 gatttctcct tgtgttaaga gtgcaggctt tacacgggca ctcccattca tcatgaagct
     3661 ctgagttaat cggttgtgat gctaccgagc atgtgcagat gatgagggtt cgtttccatc
     3721 cgtgtaccag gagtgtgctc gcctcttgtc ttctttcaag ttgacctatg tagtcaatct
     3781 cccatctctt ctttttgaga gagggtaatt ggagaagggt tatgtgaggc caccttcttc
     3841 tggtccggta tttgacactg ataataatga aaaggaaaat gcaaccataa cctaactatg
     3901 atataaagat tctgcttctg tctcccaggg gctctgtgaa gaaggaaaga gtctaacccg
     3961 catctccttt cccagatgaa attaatttat gaccatagta gtatacttta ttcctaggtg
     4021 ttttaaggtg cggattggga cagacaggtt agctggctaa cgtcattata ttttagtttt
     4081 catgacaccg aatctgttaa gaacgggctt tcttgcgtga tcaaaaaacg gaacaaaaga
     4141 ttaaacaaaa atttcaactg tgaaacagtc tggatctgta gcagctggtc atgttgaaac
     4201 tttctgtttt gctgaattcc taactaggca taattaaagt taaatgcgaa attttaggta
     4261 gcagccgata aattgttctg ggatttccta acagaatact gctactactt tagtggatca
     4321 tggaaaactc tttctcattt acttttgatt atttctcttt catctattat tcaatgtcat
     4381 gaacacggaa gttggaagag tgacaatgat tgttccagac tgcgtctgta tgctttttct
     4441 cctttgagaa ttaaggataa gagcttatcc tttgaaccag gtagaactgc cggaacacgc
     4501 tctcctctgt ctcttcagtc tcgccagagg tgaccagtct gtacagccct ataacttaat
     4561 atgcacagag caactgcagg catccacaac gtgaacaacc tggagtcttc caaacaagga
     4621 gagagaggca aggccaggga tcagcaaatc aaggaagagt tgtcctctgc caggaatcag
     4681 cctctcagtt tttaataata tttttcatat cctcttttca acataacatg tcccactttc
     4741 accttcaagc tgtgcttcct aaagcccaag attttaaaag aatttacttc caaacctggc
     4801 cttcaaccag aatgtgatta ggggtaatcc tctccaagtg tctgtcaaat tatgcctgct
     4861 aatttcagcg agaaaagttt ttaagtgaac ccaaccatgt aaggactaaa agctctctgg
     4921 tccctgagag ccatagcccc tgagataagc cagagctaca aatatatcgt ctagacttta
     4981 aagaaaggat atgattctta atatagctca gcaaccacta agtgaagccc aagctctcat
     5041 aattttttct atgacaggag aagcctgcct gacagttgac tcgaaacatt ctcacccctt
     5101 ctgctaccac agaaataaac taaaaagaaa ggactcccct aaatcaggcc agatggtgac
     5161 ctgtggctat ttcagctcag gatgtcagcc tctaaagcat caggtttgaa tcatttggga
     5221 tcatgggatt ctatcattgt tcacttgaat ctgctgacac acttcctctg gaaagcgcag
     5281 tttggcatgg atgagtcagt gtttttttgt tttttttttt aattttaggt tgttcgtttt
     5341 ttaaaaaata aaaattgctt tgagaat
//
LOCUS       XM_032608137            5716 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity tyrosine phosphorylation
            regulated kinase 3 (DYRK3), transcript variant X4, mRNA.
ACCESSION   XM_032608137
VERSION     XM_032608137.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5716
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5716
                     /gene="DYRK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741489"
     CDS             143..1684
                     /gene="DYRK3"
                     /codon_start=1
                     /product="dual specificity
                     tyrosine-phosphorylation-regulated kinase 3 isoform X2"
                     /protein_id="XP_032464028.1"
                     /db_xref="GeneID:116741489"
                     /translation="MGGTARGPGRKDAGPPGAGLPPQQRRLGDGVYDTFVMIDETKCP
                     PCSNALCNPSEPPLPRRLNITTEHLTRDPTQRFLNGGEMKVEQLFQEFGNRRSDTFQS
                     DGVNDSEKCSPTVSQGKSSDSLNTVKSSSSSKAPKVLPLTPEQALKQYKHHLTAYEKL
                     EIISYPEIYFVGPNAKKRHGVIGGPNNGGYDDADGAYIHVPRDHLAYRYEVLKIIGKG
                     SFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLE
                     SFTFRNHVCMAFELLSIDLYELIKKNKFQGFSIQLVRKFAQSILQSLDALHKNKIIHC
                     DLKPENILLKHHGRSATKVIDFGSSCFEYQKLYTYIQSRFYRAPEIILGSRYSTPIDI
                     WSFGCILAELLTGQPLFPGEDEGDQLACMMELLGMPPPKLLEQSKRANLNRRLFPRLG
                     VSFRYKKKIQKLVCGVGEQKGTPRFVPGCGFGAWNYICRITVNEVVCNIMNEEHSVLL
                     FGNLI"
     misc_feature    569..1486
                     /gene="DYRK3"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(785..796,803..805,809..811,848..850,854..856,
                     956..958,1004..1015,1145..1147,1157..1162,1166..1168,
                     1202..1207)
                     /gene="DYRK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271126"
ORIGIN      
        1 cgcgcggagt tgcagtgtgt gcaagagagt gttaaccgag gaaacgtcgc ggcccgggag
       61 gcagccgccg cagcgcaggt ggacgctgct cgcctgaccg tccaaccgcc gcccctccct
      121 ccggggggtc ccgagctgac ggatgggagg cacagctcgc gggcccgggc ggaaggatgc
      181 ggggccgcca ggagccggac tcccgcccca gcagcggaga ttgggtgatg gtgtctatga
      241 taccttcgtg atgatagatg aaaccaaatg cccaccctgt tcaaatgcac tctgcaatcc
      301 ttctgaacca cctctaccca gaagactaaa tatcaccact gagcatttaa caagagatcc
      361 tactcagcgc tttctgaatg gaggtgagat gaaggtagaa caactatttc aagaatttgg
      421 caacagaaga tctgatactt ttcagtcaga tggcgtcaac gactctgaaa aatgctctcc
      481 tacagtttct cagggtaaaa gttcagatag tttgaataca gtaaaatcca gcagttcatc
      541 caaagcaccc aaagtgttgc ctctgactcc agaacaagcg ctgaagcaat ataaacacca
      601 cctcactgct tatgagaagc tggaaatcat cagttatcca gaaatttact ttgtgggtcc
      661 aaatgccaaa aaaagacatg gagttatcgg tggtcccaat aatgggggtt acgatgatgc
      721 agacggggcc tatattcacg tgcctcgaga ccatctagct tatcgatacg aggtgctgaa
      781 aattattggc aagggcagtt ttgggcaggt agcccgggtc tatgatcaca aacttcggca
      841 gtacgtggcc ctgaagatgg tacgcaatga aaagcgcttc catcgccaag cagccgagga
      901 gatccggatt ttggagcatc ttaaaaagca ggataaaacc ggtagcatga acgtcattca
      961 tatgctggaa agtttcacgt tccggaacca tgtttgcatg gcctttgagt tgctgagcat
     1021 agacctttat gaactcatta aaaaaaacaa gttccagggt tttagcatcc agttggttcg
     1081 caagtttgct caatccatct tgcaatcctt ggatgctctc cacaaaaaca agatcattca
     1141 ctgtgacctg aagccagaaa acattctcct gaaacaccat gggcgcagtg cgactaaggt
     1201 cattgacttt gggtccagct gttttgagta ccagaagctt tacacatata tccagtctcg
     1261 gttctacaga gctccagaga tcatcttagg aagccgctac agcacgccca ttgacatatg
     1321 gagttttggc tgcatccttg cagaactttt aacaggacag cctctcttcc ctggagagga
     1381 tgaaggagac cagctggcct gtatgatgga gcttctaggg atgccaccac caaaactcct
     1441 ggagcaatcc aaacgtgcca atttaaaccg aagactattc cctagactgg gagtgagctt
     1501 cagatataag aagaaaatcc agaaactggt gtgtggagtt ggagagcaga aaggtactcc
     1561 aaggtttgtt cctgggtgtg ggtttggggc ttggaactac atttgtcgaa tcacagtaaa
     1621 tgaagtagta tgcaacatca tgaatgagga acactctgta ttgctatttg gaaacttgat
     1681 atgaggctcc caatatcaaa atcaatgcaa ctttctccag gggtcagcta ttcagaaaat
     1741 cttggcttca atagaaggtc taaggtatat gggcattcag gaggatctgc ccagtcttcc
     1801 agacagaaac atttccacta tcgtgacaaa gggatgaggg cagtttggct gggttgcctt
     1861 gttccctgaa gtgtgtgggt agaatggctt ttgtaggtag agggcaggga cagggctgat
     1921 tcatctttgc aacaccctca cttgggagca gcagccagca ccttccccac ccttcaccac
     1981 caccatcatc actccctcct catctcactt ggttcctctg aatctggatc ccatgattgt
     2041 gtctcgttgg catcctcaat tccccttcct ccttgccctt ctcactgaac tagcctcata
     2101 atccctcaac atggaccaat tatacatctg gattctcacc tgcattgtcc acttttgggg
     2161 gaaaagattg ttcagttgtg aaaatgggta tcccacagaa taccaggcaa tgaacctgca
     2221 gcattaactc atttgctact tctgcaggat gggagttatt atccccacta accagataag
     2281 aaaactgagg ctcggttagt tctttttcgg tggtagattt gaggagcatc ttggggagat
     2341 agaattattt atgccttact tgtttgtcag ctaagaatag ctgctgctat tttaatttta
     2401 taatgtcagt gtctttttga cgccccaccc atcttgatta aattatcact ttatttggtc
     2461 aagatttttt ggagccaatg agaaggatga cagtagaaaa caaaagtgtt tgttttcctt
     2521 acatctctga aggtgacaaa atctggaaga ggaaattagg gtgaagtccc aagtttctga
     2581 ttgagctcta ggaatgaggt ggcaggtttc tttatatcat ctgttattat cattgtcact
     2641 agaatacaaa ggtcattgaa tcttactgca tgagttagtt ttatctttaa ccattcagct
     2701 ctaagagaat gccagaaact gtctgctaat tgtcttccgt gtgtcttctc catatcttac
     2761 ttctggagat gatgttcagg ttttttaaag atacactgtt tctaagttga gaaatgggag
     2821 aaaccgtgtt ctaatgtatt ccttgactga tctgtgagca ccgccttccc aaagccttgc
     2881 cagctactac atggcttgtc agcagtcctt tgggtgtttc ccaaagttca ctccaattca
     2941 gtaagagtca gcagtgaggt gtagcgcaca acaggggctt agcagggaat gcagagatgg
     3001 gtgggtgata cggtcccagc tcttcctgac ccaaacttgc tgtgactgac ttttagccag
     3061 tccacttcag tgtcttcact agcaggcagt ggacttctct tgctactcag agtgggctgt
     3121 gggccagacc agcctcatta gcatctcctg gaaatgcaga gtgccggccc catcctaggc
     3181 cggccccatc ctagacctta tcaatcagaa tctgcccgtt agttaacaag attcccaggg
     3241 ggttcacgtg cacatcaaag tttgagaact ggattctgaa atacacacta acaaccgtca
     3301 ttctcccctt gccccaggaa cgaataaagt agtgaggaga cttgggtttg acgcctgact
     3361 ccgaatatat ttcatctctg acttgggcaa gctgcttcct ctggagcatc gcaacattga
     3421 ggtgtttctc ctgattcagg agaatgcagc ttaaacgccc aacacccaca caactctgac
     3481 ccgacttttc taacggtaaa gtgagaaaca aaagccaggc cgcaaaggat ggagcggggg
     3541 tcactgtttt tcactttatt ttaatttata ggaaaattta aatacaattc taggtggaac
     3601 ttttaaacgt ttttaaaaaa ttacttgaaa aaaaaaaagc atttaagtca gatccatttg
     3661 gctttccttg caaccttccc aagctctttc cattccaaac tgccatccag gcagggactc
     3721 ttctcacccc tcttattgat ttttaaattt acaaaatcaa ccgagtttcc aaattgttat
     3781 tgacacagta cagagctggg taggaatgtt cgttttatct cattcctaaa atcatgtttt
     3841 tctttgaaca tggaaaattg gctaacccag ctaatacctg ctcattttat tagactccat
     3901 cccactttct accctcacag tgattgatct gttcatcgtg tgctatcacg atttctcctt
     3961 gtgttaagag tgcaggcttt acacgggcac tcccattcat catgaagctc tgagttaatc
     4021 ggttgtgatg ctaccgagca tgtgcagatg atgagggttc gtttccatcc gtgtaccagg
     4081 agtgtgctcg cctcttgtct tctttcaagt tgacctatgt agtcaatctc ccatctcttc
     4141 tttttgagag agggtaattg gagaagggtt atgtgaggcc accttcttct ggtccggtat
     4201 ttgacactga taataatgaa aaggaaaatg caaccataac ctaactatga tataaagatt
     4261 ctgcttctgt ctcccagggg ctctgtgaag aaggaaagag tctaacccgc atctcctttc
     4321 ccagatgaaa ttaatttatg accatagtag tatactttat tcctaggtgt tttaaggtgc
     4381 ggattgggac agacaggtta gctggctaac gtcattatat tttagttttc atgacaccga
     4441 atctgttaag aacgggcttt cttgcgtgat caaaaaacgg aacaaaagat taaacaaaaa
     4501 tttcaactgt gaaacagtct ggatctgtag cagctggtca tgttgaaact ttctgttttg
     4561 ctgaattcct aactaggcat aattaaagtt aaatgcgaaa ttttaggtag cagccgataa
     4621 attgttctgg gatttcctaa cagaatactg ctactacttt agtggatcat ggaaaactct
     4681 ttctcattta cttttgatta tttctctttc atctattatt caatgtcatg aacacggaag
     4741 ttggaagagt gacaatgatt gttccagact gcgtctgtat gctttttctc ctttgagaat
     4801 taaggataag agcttatcct ttgaaccagg tagaactgcc ggaacacgct ctcctctgtc
     4861 tcttcagtct cgccagaggt gaccagtctg tacagcccta taacttaata tgcacagagc
     4921 aactgcaggc atccacaacg tgaacaacct ggagtcttcc aaacaaggag agagaggcaa
     4981 ggccagggat cagcaaatca aggaagagtt gtcctctgcc aggaatcagc ctctcagttt
     5041 ttaataatat ttttcatatc ctcttttcaa cataacatgt cccactttca ccttcaagct
     5101 gtgcttccta aagcccaaga ttttaaaaga atttacttcc aaacctggcc ttcaaccaga
     5161 atgtgattag gggtaatcct ctccaagtgt ctgtcaaatt atgcctgcta atttcagcga
     5221 gaaaagtttt taagtgaacc caaccatgta aggactaaaa gctctctggt ccctgagagc
     5281 catagcccct gagataagcc agagctacaa atatatcgtc tagactttaa agaaaggata
     5341 tgattcttaa tatagctcag caaccactaa gtgaagccca agctctcata attttttcta
     5401 tgacaggaga agcctgcctg acagttgact cgaaacattc tcaccccttc tgctaccaca
     5461 gaaataaact aaaaagaaag gactccccta aatcaggcca gatggtgacc tgtggctatt
     5521 tcagctcagg atgtcagcct ctaaagcatc aggtttgaat catttgggat catgggattc
     5581 tatcattgtt cacttgaatc tgctgacaca cttcctctgg aaagcgcagt ttggcatgga
     5641 tgagtcagtg tttttttgtt ttttttttta attttaggtt gttcgttttt taaaaaataa
     5701 aaattgcttt gagaat
//
LOCUS       XM_032608146            3962 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity tyrosine phosphorylation
            regulated kinase 3 (DYRK3), transcript variant X5, mRNA.
ACCESSION   XM_032608146
VERSION     XM_032608146.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3962
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3962
                     /gene="DYRK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741489"
     CDS             143..1573
                     /gene="DYRK3"
                     /codon_start=1
                     /product="dual specificity
                     tyrosine-phosphorylation-regulated kinase 3 isoform X3"
                     /protein_id="XP_032464037.1"
                     /db_xref="GeneID:116741489"
                     /translation="MGGTARGPGRKDAGPPGAGLPPQQRRLGDGVYDTFVMIDETKCP
                     PCSNALCNPSEPPLPRRLNITTEHLTRDPTQRFLNGGEMKVEQLFQEFGNRRSDTFQS
                     DGVNDSEKCSPTVSQGKSSDSLNTVKSSSSSKAPKVLPLTPEQALKQYKHHLTAYEKL
                     EIISYPEIYFVGPNAKKRHGVIGGPNNGGYDDADGAYIHVPRDHLAYRYEVLKIIGKG
                     SFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLE
                     SFTFRNHVCMAFELLSIDLYELIKKNKFQGFSIQLVRKFAQSILQSLDALHKNKIIHC
                     DLKPENILLKHHGRSATKVIDFGSSCFEYQKLYTYIQSRFYRAPEIILGSRYSTPIDI
                     WSFGCILAELLTGQPLFPGEDEGDQLACMMELLGMPPPKLLEQSKRANLNRRLFPRLG
                     VSFRYKKKIQKLVCGVGEQKGTPRNE"
     misc_feature    569..1486
                     /gene="DYRK3"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(785..796,803..805,809..811,848..850,854..856,
                     956..958,1004..1015,1145..1147,1157..1162,1166..1168,
                     1202..1207)
                     /gene="DYRK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271126"
ORIGIN      
        1 cgcgcggagt tgcagtgtgt gcaagagagt gttaaccgag gaaacgtcgc ggcccgggag
       61 gcagccgccg cagcgcaggt ggacgctgct cgcctgaccg tccaaccgcc gcccctccct
      121 ccggggggtc ccgagctgac ggatgggagg cacagctcgc gggcccgggc ggaaggatgc
      181 ggggccgcca ggagccggac tcccgcccca gcagcggaga ttgggtgatg gtgtctatga
      241 taccttcgtg atgatagatg aaaccaaatg cccaccctgt tcaaatgcac tctgcaatcc
      301 ttctgaacca cctctaccca gaagactaaa tatcaccact gagcatttaa caagagatcc
      361 tactcagcgc tttctgaatg gaggtgagat gaaggtagaa caactatttc aagaatttgg
      421 caacagaaga tctgatactt ttcagtcaga tggcgtcaac gactctgaaa aatgctctcc
      481 tacagtttct cagggtaaaa gttcagatag tttgaataca gtaaaatcca gcagttcatc
      541 caaagcaccc aaagtgttgc ctctgactcc agaacaagcg ctgaagcaat ataaacacca
      601 cctcactgct tatgagaagc tggaaatcat cagttatcca gaaatttact ttgtgggtcc
      661 aaatgccaaa aaaagacatg gagttatcgg tggtcccaat aatgggggtt acgatgatgc
      721 agacggggcc tatattcacg tgcctcgaga ccatctagct tatcgatacg aggtgctgaa
      781 aattattggc aagggcagtt ttgggcaggt agcccgggtc tatgatcaca aacttcggca
      841 gtacgtggcc ctgaagatgg tacgcaatga aaagcgcttc catcgccaag cagccgagga
      901 gatccggatt ttggagcatc ttaaaaagca ggataaaacc ggtagcatga acgtcattca
      961 tatgctggaa agtttcacgt tccggaacca tgtttgcatg gcctttgagt tgctgagcat
     1021 agacctttat gaactcatta aaaaaaacaa gttccagggt tttagcatcc agttggttcg
     1081 caagtttgct caatccatct tgcaatcctt ggatgctctc cacaaaaaca agatcattca
     1141 ctgtgacctg aagccagaaa acattctcct gaaacaccat gggcgcagtg cgactaaggt
     1201 cattgacttt gggtccagct gttttgagta ccagaagctt tacacatata tccagtctcg
     1261 gttctacaga gctccagaga tcatcttagg aagccgctac agcacgccca ttgacatatg
     1321 gagttttggc tgcatccttg cagaactttt aacaggacag cctctcttcc ctggagagga
     1381 tgaaggagac cagctggcct gtatgatgga gcttctaggg atgccaccac caaaactcct
     1441 ggagcaatcc aaacgtgcca atttaaaccg aagactattc cctagactgg gagtgagctt
     1501 cagatataag aagaaaatcc agaaactggt gtgtggagtt ggagagcaga aaggtactcc
     1561 aaggaacgaa taaagtagtg aggagacttg ggtttgacgc ctgactccga atatatttca
     1621 tctctgactt gggcaagctg cttcctctgg agcatcgcaa cattgaggtg tttctcctga
     1681 ttcaggagaa tgcagcttaa acgcccaaca cccacacaac tctgacccga cttttctaac
     1741 ggtaaagtga gaaacaaaag ccaggccgca aaggatggag cgggggtcac tgtttttcac
     1801 tttattttaa tttataggaa aatttaaata caattctagg tggaactttt aaacgttttt
     1861 aaaaaattac ttgaaaaaaa aaaagcattt aagtcagatc catttggctt tccttgcaac
     1921 cttcccaagc tctttccatt ccaaactgcc atccaggcag ggactcttct cacccctctt
     1981 attgattttt aaatttacaa aatcaaccga gtttccaaat tgttattgac acagtacaga
     2041 gctgggtagg aatgttcgtt ttatctcatt cctaaaatca tgtttttctt tgaacatgga
     2101 aaattggcta acccagctaa tacctgctca ttttattaga ctccatccca ctttctaccc
     2161 tcacagtgat tgatctgttc atcgtgtgct atcacgattt ctccttgtgt taagagtgca
     2221 ggctttacac gggcactccc attcatcatg aagctctgag ttaatcggtt gtgatgctac
     2281 cgagcatgtg cagatgatga gggttcgttt ccatccgtgt accaggagtg tgctcgcctc
     2341 ttgtcttctt tcaagttgac ctatgtagtc aatctcccat ctcttctttt tgagagaggg
     2401 taattggaga agggttatgt gaggccacct tcttctggtc cggtatttga cactgataat
     2461 aatgaaaagg aaaatgcaac cataacctaa ctatgatata aagattctgc ttctgtctcc
     2521 caggggctct gtgaagaagg aaagagtcta acccgcatct cctttcccag atgaaattaa
     2581 tttatgacca tagtagtata ctttattcct aggtgtttta aggtgcggat tgggacagac
     2641 aggttagctg gctaacgtca ttatatttta gttttcatga caccgaatct gttaagaacg
     2701 ggctttcttg cgtgatcaaa aaacggaaca aaagattaaa caaaaatttc aactgtgaaa
     2761 cagtctggat ctgtagcagc tggtcatgtt gaaactttct gttttgctga attcctaact
     2821 aggcataatt aaagttaaat gcgaaatttt aggtagcagc cgataaattg ttctgggatt
     2881 tcctaacaga atactgctac tactttagtg gatcatggaa aactctttct catttacttt
     2941 tgattatttc tctttcatct attattcaat gtcatgaaca cggaagttgg aagagtgaca
     3001 atgattgttc cagactgcgt ctgtatgctt tttctccttt gagaattaag gataagagct
     3061 tatcctttga accaggtaga actgccggaa cacgctctcc tctgtctctt cagtctcgcc
     3121 agaggtgacc agtctgtaca gccctataac ttaatatgca cagagcaact gcaggcatcc
     3181 acaacgtgaa caacctggag tcttccaaac aaggagagag aggcaaggcc agggatcagc
     3241 aaatcaagga agagttgtcc tctgccagga atcagcctct cagtttttaa taatattttt
     3301 catatcctct tttcaacata acatgtccca ctttcacctt caagctgtgc ttcctaaagc
     3361 ccaagatttt aaaagaattt acttccaaac ctggccttca accagaatgt gattaggggt
     3421 aatcctctcc aagtgtctgt caaattatgc ctgctaattt cagcgagaaa agtttttaag
     3481 tgaacccaac catgtaagga ctaaaagctc tctggtccct gagagccata gcccctgaga
     3541 taagccagag ctacaaatat atcgtctaga ctttaaagaa aggatatgat tcttaatata
     3601 gctcagcaac cactaagtga agcccaagct ctcataattt tttctatgac aggagaagcc
     3661 tgcctgacag ttgactcgaa acattctcac cccttctgct accacagaaa taaactaaaa
     3721 agaaaggact cccctaaatc aggccagatg gtgacctgtg gctatttcag ctcaggatgt
     3781 cagcctctaa agcatcaggt ttgaatcatt tgggatcatg ggattctatc attgttcact
     3841 tgaatctgct gacacacttc ctctggaaag cgcagtttgg catggatgag tcagtgtttt
     3901 tttgtttttt tttttaattt taggttgttc gttttttaaa aaataaaaat tgctttgaga
     3961 at
//
LOCUS       XM_032608162            1677 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of hemoglobinization and
            erythroid cell expansion (RHEX), transcript variant X1, mRNA.
ACCESSION   XM_032608162
VERSION     XM_032608162.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1677
                     /gene="RHEX"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741502"
     CDS             572..1090
                     /gene="RHEX"
                     /codon_start=1
                     /product="regulator of hemoglobinization and erythroid
                     cell expansion protein isoform X1"
                     /protein_id="XP_032464053.1"
                     /db_xref="GeneID:116741502"
                     /translation="MLTEEMKVWHGIVIAVVSLVLQACLLAAINYLLSRHMAKENEQI
                     LKRARLQVPRPSRAHYCPPAAKKTEEPRAERSTPAPKPRYPHDSDTSSESSGSSDSSP
                     PTHQATKDVNYTQVAFSAPGRRRNDSVLDYENIKEATDYVNVKPKSHKPSFWTFVNPG
                     VFEPVEYNQVAM"
     misc_feature    590..1087
                     /gene="RHEX"
                     /note="Regulator of human erythroid cell expansion (RHEX);
                     Region: DUF4692; pfam15763"
                     /db_xref="CDD:434917"
ORIGIN      
        1 gacgtgtgca tatctgtgga atttaaacat ttgttcacat ggagggaaag agactactaa
       61 cctccatcga cgtaaactgt ctgcatggag cagtagggta gagccctgcc aagagagaca
      121 ggaggtgttg tctgttgctt caccccgctc tacaaaactg agctagatta atatcttctg
      181 agcagcatgc cctcaccctg ctggaaatga tgaaacattg gcgactgacc tccagtgact
      241 gagaagcttc cgggtggggc tggggggcgg tgagggagat gtttccatca ggacattgct
      301 gaaacacagg ctgggatcag aactttctca tggtcctggg gattcaaaga ctggaatctg
      361 gggagaggaa agcaaacgac cctctagcag ccgagactgc ccaggagtcc tgacccattg
      421 cctcgcctcc gtgggtctcc agggcagtcc cgctcttggt gctgcctgga cacgaggtac
      481 ccccagtggt tccatccacg tctcttcctg ctgcccctga gagagcccaa gcccctctcg
      541 cgacctgtga cggccctggg aggaacttgt catgctgacg gaagaaatga aggtctggca
      601 cggaatagtg atcgcagtgg tgtctctggt actgcaggcc tgcctcctcg cagccatcaa
      661 ctacctgctt agcaggcaca tggccaagga gaatgagcag atactgaaaa gggccaggct
      721 ccaggtcccc aggcccagcc gtgcccacta ctgccctcct gctgccaaga agacggagga
      781 gcctagggca gagagaagca cccctgcgcc taagccccgt tacccacatg acagtgacac
      841 gtcctcagag agctccggca gctcagacag ctcacctccc actcaccagg ccaccaagga
      901 tgtgaactac acacaagtgg ccttttcagc tcctggaaga cgaagaaatg actctgtcct
      961 ggactatgag aacataaagg aagccacaga ttatgtcaat gtcaaaccaa aaagccacaa
     1021 gcccagtttc tggacttttg tgaaccctgg tgtctttgag ccagtggaat acaaccaagt
     1081 ggccatgtga attctaggct ttttaatggg gcgtagttcc ttatgaattc ttgcacttat
     1141 tttgtaggcg gactagtgtt tggttatttt ttttgacaag gaaataggag aaaaagtatg
     1201 cctgtatgtc agcaaagaat attcacatta ggaagaactt ccaggttaag tatgaaaaca
     1261 ttggcgcata tcagtagaga aagtgatgga gtctctctcc ataaaaaaat ttttaaagat
     1321 tttaatcaac tgtagtagag ttctgtttga cagtcttatg attaaatgcc tctctgagct
     1381 atttaattat aggtgataaa caacttcctt aaaattttta aataaaacag caaccacagg
     1441 ttcctctttt cctctggctt aaccttgcac cctgttcctt tatcagtatt gtatcttgct
     1501 gagtaatcct gctctgtcct cagaacttta aataatgcat ttggaaagct caccgttact
     1561 taacctaaga atctgctgtt cttaggaaag aaagatgaca gagtagtaaa tgccaactag
     1621 catcacaatc tgttattcca aaaaaacttt ccaaattcaa tccaataaaa atcaata
//
LOCUS       XM_032608171            1570 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of hemoglobinization and
            erythroid cell expansion (RHEX), transcript variant X2, mRNA.
ACCESSION   XM_032608171
VERSION     XM_032608171.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1570
                     /gene="RHEX"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116741502"
     CDS             480..983
                     /gene="RHEX"
                     /codon_start=1
                     /product="regulator of hemoglobinization and erythroid
                     cell expansion protein isoform X2"
                     /protein_id="XP_032464062.1"
                     /db_xref="GeneID:116741502"
                     /translation="MKVWHGIVIAVVSLVLQACLLAAINYLLSRHMAKENEQILKRAR
                     LQVPRPSRAHYCPPAAKKTEEPRAERSTPAPKPRYPHDSDTSSESSGSSDSSPPTHQA
                     TKDVNYTQVAFSAPGRRRNDSVLDYENIKEATDYVNVKPKSHKPSFWTFVNPGVFEPV
                     EYNQVAM"
     misc_feature    483..980
                     /gene="RHEX"
                     /note="Regulator of human erythroid cell expansion (RHEX);
                     Region: DUF4692; pfam15763"
                     /db_xref="CDD:434917"
ORIGIN      
        1 acgtgtgcat atctgtggaa tttaaacatt tgttcacatg gagggaaaga gactactaac
       61 ctccatcgac gtaaactgtc tgcatggagc agtagggtag agccctgcca agagagacag
      121 gaggtgttgt ctgttgcttc accccgctct acaaaactga gctagattaa tatcttctga
      181 gcagcatgcc ctcaccctgc tggaaatgat gaaacattgg cgactgacct ccagtgactg
      241 agaagcttcc gggtggggct ggggggcggt gagggagatg tttccatcag gacattgctg
      301 aaacacaggc tgggatcaga actttctcat ggtcctgggg attcaaagac tggaatctgg
      361 ggagaggaaa gcaaacgacc ctctagcagc cgagactgcc caggagtcct gacccattgc
      421 ctcgcctccg tgggtctcca gggcagtccc gctcttggtg ctgcctggac acgagagaaa
      481 tgaaggtctg gcacggaata gtgatcgcag tggtgtctct ggtactgcag gcctgcctcc
      541 tcgcagccat caactacctg cttagcaggc acatggccaa ggagaatgag cagatactga
      601 aaagggccag gctccaggtc cccaggccca gccgtgccca ctactgccct cctgctgcca
      661 agaagacgga ggagcctagg gcagagagaa gcacccctgc gcctaagccc cgttacccac
      721 atgacagtga cacgtcctca gagagctccg gcagctcaga cagctcacct cccactcacc
      781 aggccaccaa ggatgtgaac tacacacaag tggccttttc agctcctgga agacgaagaa
      841 atgactctgt cctggactat gagaacataa aggaagccac agattatgtc aatgtcaaac
      901 caaaaagcca caagcccagt ttctggactt ttgtgaaccc tggtgtcttt gagccagtgg
      961 aatacaacca agtggccatg tgaattctag gctttttaat ggggcgtagt tccttatgaa
     1021 ttcttgcact tattttgtag gcggactagt gtttggttat tttttttgac aaggaaatag
     1081 gagaaaaagt atgcctgtat gtcagcaaag aatattcaca ttaggaagaa cttccaggtt
     1141 aagtatgaaa acattggcgc atatcagtag agaaagtgat ggagtctctc tccataaaaa
     1201 aatttttaaa gattttaatc aactgtagta gagttctgtt tgacagtctt atgattaaat
     1261 gcctctctga gctatttaat tataggtgat aaacaacttc cttaaaattt ttaaataaaa
     1321 cagcaaccac aggttcctct tttcctctgg cttaaccttg caccctgttc ctttatcagt
     1381 attgtatctt gctgagtaat cctgctctgt cctcagaact ttaaataatg catttggaaa
     1441 gctcaccgtt acttaaccta agaatctgct gttcttagga aagaaagatg acagagtagt
     1501 aaatgccaac tagcatcaca atctgttatt ccaaaaaaac tttccaaatt caatccaata
     1561 aaaatcaata
//
LOCUS       XM_032608186             534 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interleukin 19 (IL19), mRNA.
ACCESSION   XM_032608186
VERSION     XM_032608186.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..534
                     /gene="IL19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins"
                     /db_xref="GeneID:116741507"
     CDS             1..534
                     /gene="IL19"
                     /codon_start=1
                     /product="interleukin-19"
                     /protein_id="XP_032464077.1"
                     /db_xref="GeneID:116741507"
                     /translation="MQAQGVSLCLLAVMLFLCSAHARGLRRCLISMDMRRMEESFRGI
                     KNAIQAKDTFRNVTILSTSETLDSVKPLDVCCVTKNLLAFYVDRVFKDHQELSPQILR
                     KISSIANSFLHMQKSLQRCQEQRLCHCRQEATNATRIIHDNYHRLEIRSAAIKSLGEL
                     DVLLAWIDKNHQGTSAA"
     misc_feature    <100..504
                     /gene="IL19"
                     /note="Interleukin 10; Region: IL10; cl02501"
                     /db_xref="CDD:413341"
ORIGIN      
        1 atgcaggcac agggtgtttc tctctgcctc ctggctgtga tgctctttct gtgctcagcg
       61 catgcccgag gtctcaggag atgtctgatt tccatggaca tgcgccgtat ggaggagagt
      121 ttccgaggga tcaaaaacgc cattcaagct aaggacacct tccgaaatgt caccatcctg
      181 tccacatcgg agaccctgga cagcgttaag cccttagatg tttgctgcgt gaccaagaac
      241 ctcctggcat tttacgtgga cagggtgttc aaggaccatc aggagctgag cccccaaatc
      301 ttgagaaaaa tcagcagcat tgccaactct ttcctccaca tgcagaagag tctacagcga
      361 tgtcaggagc agaggttgtg tcactgcagg caggaggcca ccaatgcaac cagaatcatc
      421 catgacaact accatcggtt ggagatccgg tctgctgcca ttaagtctct gggagagctg
      481 gacgtcttgc tagcctggat tgacaagaat catcaaggaa cttctgctgc ctaa
//
LOCUS       XM_032608200           15919 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ubiquitin protein ligase E3 component
            n-recognin 4 (UBR4), mRNA.
ACCESSION   XM_032608200
VERSION     XM_032608200.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 5 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-212               VOSU01000011.1     14779183-14779394   c
            213-310             VOSU01000011.1     14771893-14771990   c
            311-333             VOSU01000011.1     14770384-14770406   c
            334-363             VOSU01000011.1     14770353-14770382   c
            364-396             VOSU01000011.1     14770319-14770351   c
            397-414             VOSU01000011.1     14770300-14770317   c
            415-544             VOSU01000011.1     14769386-14769515   c
            545-684             VOSU01000011.1     14769133-14769272   c
            685-787             VOSU01000011.1     14768524-14768626   c
            788-929             VOSU01000011.1     14768265-14768406   c
            930-1054            VOSU01000011.1     14767985-14768109   c
            1055-1179           VOSU01000011.1     14764925-14765049   c
            1180-1239           VOSU01000011.1     14764255-14764314   c
            1240-1430           VOSU01000011.1     14763964-14764154   c
            1431-1530           VOSU01000011.1     14760535-14760634   c
            1531-1668           VOSU01000011.1     14760262-14760399   c
            1669-1786           VOSU01000011.1     14759682-14759799   c
            1787-1974           VOSU01000011.1     14758617-14758804   c
            1975-2134           VOSU01000011.1     14757541-14757700   c
            2135-2220           VOSU01000011.1     14757341-14757426   c
            2221-2390           VOSU01000011.1     14751228-14751397   c
            2391-2673           VOSU01000011.1     14749684-14749966   c
            2674-2809           VOSU01000011.1     14748911-14749046   c
            2810-2889           VOSU01000011.1     14747876-14747955   c
            2890-3026           VOSU01000011.1     14747241-14747377   c
            3027-3210           VOSU01000011.1     14746335-14746518   c
            3211-3333           VOSU01000011.1     14746075-14746197   c
            3334-3563           VOSU01000011.1     14745753-14745982   c
            3564-3685           VOSU01000011.1     14744305-14744426   c
            3686-3783           VOSU01000011.1     14743213-14743310   c
            3784-3807           VOSU01000011.1     14741733-14741756   c
            3808-3808           "N"                1-1
            3809-3941           VOSU01000011.1     14741600-14741732   c
            3942-4151           VOSU01000011.1     14740617-14740826   c
            4152-4253           VOSU01000011.1     14739658-14739759   c
            4254-4354           VOSU01000011.1     14739238-14739338   c
            4355-4553           VOSU01000011.1     14738790-14738988   c
            4554-4742           VOSU01000011.1     14738228-14738416   c
            4743-4806           VOSU01000011.1     14737744-14737807   c
            4807-4998           VOSU01000011.1     14736024-14736215   c
            4999-5069           VOSU01000011.1     14735413-14735483   c
            5070-5217           VOSU01000011.1     14735175-14735322   c
            5218-5445           VOSU01000011.1     14734523-14734750   c
            5446-5616           VOSU01000011.1     14733696-14733866   c
            5617-5799           VOSU01000011.1     14732075-14732257   c
            5800-5958           VOSU01000011.1     14731049-14731207   c
            5959-6111           VOSU01000011.1     14730552-14730704   c
            6112-6339           VOSU01000011.1     14729870-14730097   c
            6340-6497           VOSU01000011.1     14729414-14729571   c
            6498-6669           VOSU01000011.1     14728320-14728491   c
            6670-6871           VOSU01000011.1     14727872-14728073   c
            6872-7035           VOSU01000011.1     14726868-14727031   c
            7036-7252           VOSU01000011.1     14726223-14726439   c
            7253-7469           VOSU01000011.1     14725154-14725370   c
            7470-7533           VOSU01000011.1     14723156-14723219   c
            7534-7668           VOSU01000011.1     14722367-14722501   c
            7669-7843           VOSU01000011.1     14721198-14721372   c
            7844-7984           VOSU01000011.1     14720185-14720325   c
            7985-8106           VOSU01000011.1     14718884-14719005   c
            8107-8218           VOSU01000011.1     14718108-14718219   c
            8219-8349           VOSU01000011.1     14716095-14716225   c
            8350-8527           VOSU01000011.1     14715796-14715973   c
            8528-8632           VOSU01000011.1     14715228-14715332   c
            8633-8770           VOSU01000011.1     14713555-14713692   c
            8771-8945           VOSU01000011.1     14712673-14712847   c
            8946-9042           VOSU01000011.1     14706000-14706096   c
            9043-9150           VOSU01000011.1     14704795-14704902   c
            9151-9267           VOSU01000011.1     14704238-14704354   c
            9268-9477           VOSU01000011.1     14702864-14703073   c
            9478-9627           VOSU01000011.1     14701199-14701348   c
            9628-9855           VOSU01000011.1     14699746-14699973   c
            9856-9934           VOSU01000011.1     14698911-14698989   c
            9935-10180          VOSU01000011.1     14698194-14698439   c
            10181-10349         VOSU01000011.1     14696697-14696865   c
            10350-10494         VOSU01000011.1     14696030-14696174   c
            10495-10580         VOSU01000011.1     14695366-14695451   c
            10581-10668         VOSU01000011.1     14694564-14694651   c
            10669-10862         VOSU01000011.1     14694109-14694302   c
            10863-11102         VOSU01000011.1     14692247-14692486   c
            11103-11241         VOSU01000011.1     14691694-14691832   c
            11242-11367         VOSU01000011.1     14690841-14690966   c
            11368-11496         VOSU01000011.1     14690598-14690726   c
            11497-11840         VOSU01000011.1     14689476-14689819   c
            11841-11931         VOSU01000011.1     14687710-14687800   c
            11932-12016         VOSU01000011.1     14687286-14687370   c
            12017-12144         VOSU01000011.1     14686979-14687106   c
            12145-12274         VOSU01000011.1     14683473-14683602   c
            12275-12432         VOSU01000011.1     14683191-14683348   c
            12433-12542         VOSU01000011.1     14682339-14682448   c
            12543-12684         VOSU01000011.1     14681479-14681620   c
            12685-12766         VOSU01000011.1     14680692-14680773   c
            12767-12940         VOSU01000011.1     14679940-14680113   c
            12941-13062         VOSU01000011.1     14677796-14677917   c
            13063-13260         VOSU01000011.1     14676646-14676843   c
            13261-13341         VOSU01000011.1     14675904-14675984   c
            13342-13429         VOSU01000011.1     14673987-14674074   c
            13430-13557         VOSU01000011.1     14673105-14673232   c
            13558-13665         VOSU01000011.1     14672113-14672220   c
            13666-13785         VOSU01000011.1     14671470-14671589   c
            13786-13976         VOSU01000011.1     14670619-14670809   c
            13977-14150         VOSU01000011.1     14670004-14670177   c
            14151-14250         VOSU01000011.1     14669558-14669657   c
            14251-14469         VOSU01000011.1     14665360-14665578   c
            14470-14592         VOSU01000011.1     14664320-14664442   c
            14593-14637         VOSU01000011.1     14663349-14663393   c
            14638-14726         VOSU01000011.1     14663259-14663347   c
            14727-14852         VOSU01000011.1     14662670-14662795   c
            14853-15044         VOSU01000011.1     14661389-14661580   c
            15045-15272         VOSU01000011.1     14658921-14659148   c
            15273-15363         VOSU01000011.1     14655587-14655677   c
            15364-15526         VOSU01000011.1     14654732-14654894   c
            15527-15919         VOSU01000011.1     14651919-14652311   c
FEATURES             Location/Qualifiers
     source          1..15919
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15919
                     /gene="UBR4"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 4 bases in 4 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5 long
                     SRA reads, 17 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116741511"
     CDS             37..15591
                     /gene="UBR4"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 4 bases in 4 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
                     UBR4"
                     /protein_id="XP_032464091.1"
                     /db_xref="GeneID:116741511"
                     /translation="MATSGGEEAAAAAPTPGAPATEADTTPGWEVAVRPLLSASYSAF
                     EMKELPQLVASVIESESEILHHEKQYEPFYSSFVALSTHYITTVCSLIPRNQLQSVAA
                     ACKVLIEFSLLRLENPDEACAVSQKHLILLIKGLCTGCSRLDRTEIITFTAMMKSAKL
                     PQTVKTLSDVEDQKELAAPVSPELKQKEVQMNFLNQLTSVFNPRTVASSPVGPQTPAE
                     GENDEQSSTDQASAIKTKNVFIAQNVASLQELGGSEKLLRVCLNLPYFLRYINRFQDA
                     VLANSFFIMPATVADATAVRNGFHSLVIDVTMALDTLSLPVLEPLNPSRLQDVTVLSL
                     SCLYAGVSVATCMAILHVGSAQQVRTGSTSSKEDDYESDAATIVQKCLEIYDMIGQAI
                     SSSRRAGGEHYQNFQLLGAWCLLNSLFLILNLSPTALADKGKEKDPLAALRVRDILSR
                     TKEGVGSPKLGPGKGHQGFGVLSVILANHAVKLLTSLFQDLQVEALHKGWEADGPPAV
                     LSVMAQSTSIQRIQRLIDSVPLTNLLLTLLSTSYRKACVLQRQRKGSMSSDASASTDS
                     NTYYEDDFSSTEEDSSQDDDSEPILGQWFEETISPSKEKVAPPPPPPPPPLESSPRVK
                     SPSKQASGEKGNILASRKDPELFLGLASNILNFITSSMLNSWNNFIRNYLSVSLSEHH
                     MATLASIIKEVDKDGLKGASDEEFAAALYHFNHSLVTSDLQSPNLQNTLLQQLGVAPF
                     SEGPWPLYIHPQSLSVLSRLLLIWQHKAGAQGDPDVPECLKVWDRFLSTMKQNALQGV
                     VPGETEDLNVEHLQLLLLIFHNFSEKGRRDILTLFVQIIQELSANMDAQTRSVPLILA
                     RLLLIFDYLLHQYSKAPVYLFEQVQHNLLSPPFGWVNGSQDSNSRRATTPLYHGFKEV
                     EENWSKHISSDAVLQPRFYCVLSPEASEDDLNRLDSVACDVLYSKLVKYDELYIALTS
                     LLAAGSQLDTVRRKENKNVTALVRPRACALQYYFLILWRILGILPPSKTYMNQLAVNS
                     PEMSECDILHTLRWSSRLRISSYVNWIKDHLIKQGMKAEHAGSLLELASSKCSSVKYD
                     VEIVEEYFARQISSFCSIDCTTILQLHEVPSLQSIYTLDAAISKVQVSLDEHFSKMAA
                     ETDPHKSSEITKNLLPATLQLIDTYASFTRAYLLQNFNEEGSTEKPSQEKLHGFAAVL
                     AIGSSRCKANTLGPTLVQNLPSSVQAVCESWNNINTNEFPNIGSWRNAFANDTXPSES
                     YISAVQAAHLGTLCGQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLL
                     LESSTESVAEISSNSLERILGPAESDEFLARVYEKLITGCYNILANHADPNSGLDESI
                     LEECLQYLEKQLESSQARKAMEEFFSDSGELVQVMMATANENLSAKFCNRVLKFFTKL
                     FQLTEKSPNPSLLHLCGSLAQLACVEPVRLQAWLTRMTASPPKDSDQLDVIQENRQLL
                     QLLTTYIVRENSQVGEGVCAVLLGTLIPMATEMLANGDGTGFPELMVVMATLASAGQG
                     AGHLQLHNAAVDWLSRCKKYLSQKNVVEKLNANVMHGKHVVVLECTCHVMSYLADVTN
                     ALSQSNGQGPSHLSVDGEERAIEVDSDWVEELAVEEEDSQAEDSDEDSLCNKLCTFTI
                     TQKEFMNQHWYHCHTCKMVDGVGVCTVCAKVCHKDHEISYAKYGSFFCDCGAKEDGSC
                     LALVKRTPSSGMSSTMKESAFQSEPRVSESLVRHTSTSPADKAKVTISDGKVADEEKP
                     KKSSLCRTVEGCREELQNQANFSFAPLVLDMLNFLMDAIQTNFQQASAVGSSSRAQQA
                     LRELHTVDKVVEMTDQLMVPTLGSQEGAFENVRMNYSGDQGQTIRQLISAHVLRRVAM
                     CVLSSPHGRRQHLAVSHEKGKITVLQLSALLKQADSSKRKLTLTRLASAPVPFTVLSL
                     TGNPCKEDYLAVCGLKDCHVLTFSSSGSVSDHLVLHPQLATGNFIIKAVWLPGSQTEL
                     AIVTADFVKIYDLSVDALSPTFYFLLPSSKIRDVTFLFNEEGKNIIVIMSSAGYIYTQ
                     LMEEASSAQQGPFYVTNVLEINHDDLKDSNSQVAGGGVSVYYSHVLQMLFFSYCQGRS
                     FAATISRTTLEVLQLFSISIKSSNGGSKTSPALCQWSEVMNHPGLVCCVQQTTGVPLV
                     VMVKPDTFLIQEIKTLPAKAKIQDMVAIRHTACNEQQRTTMILLCEDGSLRIYMANVE
                     NTSYWLQPSLQPSSVISIMKPVRKRKTATITTRTSSQVTFPIDFFEHNQQLTDVEFGG
                     NDLLQVYNAQQIKHRLNSTGMYVANTKPGGFTIEISNNNSTMVMTGMRIQIGTQAIER
                     APSYIEIFGRTMQLNLSRSRWFDFPFTREEALQADKKLNLFIGASVDPAGVTMIDAVK
                     VYGKTKEQFGWPDEPPEEFPSASVSNICPANLSQSNGTGDSDSAAPTTTSGTVLERLV
                     VSSLEALESCFAVGPIIEKERNKNAAQELATLLLSLPAPASVQQQSKSLLASLHTSRS
                     AYHSHKDQALLSKAVQCLNTSSKEGKDLDPEVFQRLVITARSIAIMRPNNLVHFTESK
                     LPQMETEGADEGREPQKQLEGDCCSFITQLVNHFWKLHASKPKNAFLAPACLPGLTHI
                     EATVNALVDIIHGYCTCELDCINTASKIYMQMLLCPDPAVSFSCKQALIRVLRPRNKR
                     RHVTLPSSPRSNTPMGDKDDDDDDDADEKMQSSGIPNGGHIRQESQEQSEVDHGDFEM
                     VSESMVLETAENVNNGNPSPLEALLAGAEGFPPMLDIPPDADDETMVELAIALSLQQD
                     QQGSSSSALGLQSLGLSGQAPSSSSLDAGTLSDTTASAPASDDEGSTAATDGSTLRTS
                     PADHGGSVGSESGGSAVDSVAGEHSVSGRSSAYGDATAEGHPAGPGSVSSSTGAISTT
                     TGHQEGDGSEGEGEGEGEGDVHASNRLHMVRLMLLERLLQTLPQLRSVGGVRAIPYMQ
                     VILMLTTDLDGEDEKDKGALDNLLSQLIAELGMDKKDVSKKNERSALNEVHLVVMRLL
                     SVFMSRTKSGSKSSICESSSLISSATAAALLSSGAVDYCLHVLKSLLEYWKSQQNDEE
                     PVATSQLLKPHTTSSPPDMSPFFLRQYVKGHAADVFEAYTQLLTEMVLRLPYQIKKIA
                     DTNSRIPPPVFDHSWFYFLSEYLMIQQTPFVRRQVRKLLLFICGSKEKYRQLRDLHTL
                     DSHVRGIKKLLEEQGIFLRASVVTASSGSALQYDTLISLMEHLKACAEIAAQRTINWQ
                     KFCIKDDSVLYFLLQVSFLVDEGVSPVLLQLLSCALCGSKVLAALAASAGPSSASSSS
                     APVATGSGQATTQSKSSTKKSKKEEKEKEKEGESSGSQEDQLCTALVNQLNKFADKET
                     LVQFLRCFLLESNSSSVRWQAHCLTLHIYRNSSKSQQELLLDLMWSIWPELPAYGRKA
                     AQFVDLLGYFSLKTPQTEKKLKEYSQKAVEILRTQNHILTNHPNSNIYNTLSGLVEFD
                     GYYLESDPCLVCNNPEVPFCYIKLSSIKVDTRYTTTQQVVKLIGSHTISKVTVKIGDL
                     KRTKMVRTINLYYNNRTVQAIVELKNKPARWHKAKKVQLTPGQTEVKIDLPLPIVASN
                     LMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENVYQCHKCRSINYDEKDP
                     FLCNACGFCKYARFDFMLYAKPCCAVDPIENEEDRKKAVSNINTLLDKADRVYHQLMG
                     HRPQLENLLCKVNEAAPEKPQDDSGTAGGISSTSASVNRYILQLAQEYCGDCKNSFDE
                     LSKIIQKVFASRKELLEYDLQQREAATKSSRTSVQPTFTASQYRALSVLGCGHTSSTK
                     CYGCASAVTEHCITLLRALATNPALRHILVSQGLIRELFDYNLRRGSAAMREEVRQLM
                     CLLTRDNPEATQQMNDLIIGKVSTALKGHWANPDLASSLQYEMLLLTDSISKEDSCWE
                     LRLRCALSLFLMAVNIKTPVVVENITLMCLRILQKLIKPPAPTSKKNKDVPVEALTTV
                     KPYCNEIHAQAQLWLKRDPKASYEAWKKCLPIRGIDGNGKSPSKSELHHLYLTEKYVW
                     RWKQFLSRRGKRTSPLDLKLGHNNWLRQVLFTPATQAARQAACTIVEALATIPSRKQQ
                     VLDLLTSYLDELSVAGECAAEYLALYQKLITSAHWKVYLAARGVLPYVGNLITKEIAR
                     LLALEEATLSTDLQQGYALKSLTGLLSSFVEVESIKRHFKSRLVGTVLNGYLCLRKLV
                     VQRTKLIDETQDMLLEMLEDMTTGTESETKAFMAVCIETAKRYNLDDYRTPVFIFERL
                     CSIIYPEENEVTEFFVTLEKDPQQEDFLQGRMPGNPYSSNEPGIGPLMRDIKNKICQD
                     CDLVALLEDDSGMELLVNNKIISLDLPVAEVYKKVWCTTNEGEPMRIVYRMRGLLGDA
                     TEEFIESLDSTTDEEEDEEEVYKMAGVMAQCEGLECMLNRLAGIKDFKQGRHLLTVLL
                     KLFSYCVKVKVNRQQLVKLEMNTLNVMLGTLNLALVAEQESKDSGGAAVAEQVLSIME
                     IILDESNAEPLSEDKGNLLLTGDKDQLVMLLDQINSTFVRSNPSVLQGLLRIIPYLSF
                     GEVEKMQILVERFKPYCSFDKYDEDHSGDDKVFLDCFCKIAAGIKNNSNGHQLKDLIL
                     QKGITQNALDYMKKHIPSAKNLDADIWKKFLSRPALPFILRLLRGLAIQHPATQVLIG
                     TDSITNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAM
                     RQKALGTLGMTTNEKGQVVTKTALLKQMEELIEEPGLTCCICREGYKFQVRSVLGIYT
                     FTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWGKCRPSDANTK
                     CNGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQS
                     FSADTGGGGRESNIHLIPYIIHTVLYVLNRTRATSREEKNLQGFLEQPKEKWVESAFE
                     VDGPHYFTVLALHVLPPEKWRAIRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSA
                     YRSSLLFWALVDLIYNMFKKVPTSNTEGGWSCSLAEYIRHNDMPIHEAADKALKAFQE
                     EFMPVETFSEFLDAAGLLSEITDPESFLKDLLDSVP"
     misc_feature    241..4992
                     /gene="UBR4"
                     /note="E3 ubiquitin-protein ligase UBR4 N-terminal;
                     Region: E3_UBR4_N; pfam19423"
                     /db_xref="CDD:466074"
     misc_feature    5020..5232
                     /gene="UBR4"
                     /note="UBR-box found in RING-type E3 ubiquitin-protein
                     ligase UBR4 and similar proteins; Region: UBR-box_UBR4;
                     cd19680"
                     /db_xref="CDD:439078"
     misc_feature    order(5077..5079,5086..5088,5113..5115,5122..5124,
                     5134..5139,5146..5148,5182..5184,5188..5190,5212..5214)
                     /gene="UBR4"
                     /note="putative Zn binding site [ion binding]; other site"
                     /db_xref="CDD:439078"
     misc_feature    11017..11151
                     /gene="UBR4"
                     /note="Double zinc ribbon; Region: DZR; pfam12773"
                     /db_xref="CDD:432773"
     misc_feature    13138..15528
                     /gene="UBR4"
                     /note="E3 ubiquitin-protein ligase UBR4; Region:
                     E3_UbLigase_R4; pfam13764"
                     /db_xref="CDD:433459"
ORIGIN      
        1 aatcccccgg agggaactgc actagtacga cggaagatgg cgacgagcgg cggcgaagag
       61 gcggcggctg cggcgccgac gcccggggcc ccggcaacgg aggcagacac gaccccgggc
      121 tgggaggtgg cggtgcggcc cctgctatcc gcgtcctatt ccgccttcga gatgaaggag
      181 ttgccgcagc tggtggcctc agtcatcgag agtgaatcag aaatcctgca ccacgagaag
      241 cagtatgagc cattctactc atcttttgtt gcactttcca cacactatat cacaacagtt
      301 tgtagcctca ttccccggaa ccaacttcag tccgtggcag cagcctgtaa agtcctgatt
      361 gagttttctc tcctgcgtct ggagaatcca gatgaggctt gtgctgtgtc ccagaaacac
      421 ttgattctcc tcatcaaggg cctgtgcact ggctgtagcc gattagacag aactgaaatt
      481 atcacattta cagcaatgat gaaatcggcc aagctgccac aaacagtgaa gacactgtca
      541 gatgtggaag atcagaaaga gctggctgca ccagtaagcc cagagctgaa gcagaaggag
      601 gtccagatga attttttgaa ccagctgacg tcagttttta accctagaac tgtagcatca
      661 tcacccgtag gtccacagac tccggcggaa ggagaaaatg atgagcagtc atctacagat
      721 caagcctctg ctatcaaaac caagaatgtg ttcatagctc agaatgtggc tagtcttcag
      781 gagcttggtg gctcagagaa gctactgcgt gtgtgtttaa acctgcccta tttcctacgc
      841 tacatcaatc ggtttcaaga tgcagtgttg gccaattcct tcttcatcat gcctgcaaca
      901 gtagcagatg ccactgctgt tcgtaatggt tttcattcac tggtgattga tgtaaccatg
      961 gcattggata ccctttctct acctgtgttg gaacctctca atccttctcg tctgcaagat
     1021 gtgacagtcc tcagtctaag ttgtttgtat gcaggtgtga gcgtggcaac ttgcatggcc
     1081 atccttcacg tgggtagtgc ccagcaagtg cggacagggt ccacgagctc caaagaagac
     1141 gactatgaga gtgacgcagc tacaattgtc caaaaatgtc ttgaaatcta tgacatgatt
     1201 ggacaagcaa tcagcagttc ccgccgggct ggtggtgagc actatcagaa cttccaattg
     1261 ctgggtgcct ggtgtttgtt aaacagcctt ttcctcatat tgaacctcag tcctactgcc
     1321 ttggctgaca aggggaaaga gaaagatccg ctggctgctc tccgggtcag agacatcctt
     1381 tctcgtacaa aggagggagt gggctctcca aagctggggc ctggaaaagg gcatcaggga
     1441 tttggggtgc tctcagtaat attggcaaac catgccgtca agctgttgac gtctctcttt
     1501 caagacctgc aagtggaggc tctgcacaag ggttgggagg cagatggtcc ccctgctgtc
     1561 ctgagcgtta tggcccagag tacctccata cagaggattc aacggctgat agactctgtc
     1621 ccactgacaa acctgctgtt gacattactc tcaacttcct acagaaaggc atgtgtcctg
     1681 cagcgtcaga ggaagggctc tatgagcagc gatgccagcg cctctactga ctcaaacacc
     1741 tactatgagg atgatttcag cagcacggag gaggacagca gccaagatga tgacagtgag
     1801 cctattctgg ggcagtggtt tgaagagacc atctccccca gtaaagagaa agtggcacct
     1861 ccgcctcctc ccccaccccc tccgctggag agctcacctc gagttaaaag ccccagtaag
     1921 caggcctctg gtgagaaggg caacattttg gctagtcgca aagatcctga gttgttctta
     1981 ggtctggctt ccaacatttt gaacttcatc acctcttcca tgctgaactc ttggaataat
     2041 tttatccgaa actatctgag tgtatctctt tcagaacacc atatggccac cctggccagt
     2101 atcattaagg aggtggataa agatggactc aagggtgcat cagatgaaga gtttgctgcc
     2161 gctctctatc acttcaacca ctctctggta acttctgacc ttcagtcacc taacctgcag
     2221 aatacactgt tgcagcagct gggagtggct cctttttctg agggcccttg gcccttgtac
     2281 attcatcctc aaagcctgtc tgtgctttca cgcctcctgc tcatctggca gcataaagct
     2341 ggtgctcaag gtgaccctga cgtccctgaa tgccttaaag tttgggacag gtttttgtca
     2401 acaatgaagc agaatgccct gcaaggggtg gtgcccggtg agacggaaga tttgaatgta
     2461 gaacacctgc agctgctcct cctcattttc cacaacttct ctgagaaagg ccggcgggac
     2521 atattgaccc tttttgtgca gatcatccag gagttgagtg ccaacatgga tgcccagacg
     2581 cgctctgtgc ctctcatcct ggctcgcctg cttttgatct ttgattatct gcttcatcag
     2641 tactccaaag cccctgtgta tctgtttgag caggtgcaac ataacctgct tagcccgcct
     2701 tttgggtggg tgaatggatc ccaggacagc aacagccgcc gggcgaccac ccctctctat
     2761 catgggttca aagaagtaga agaaaactgg tctaagcata tttcatcaga tgctgtccta
     2821 caacccagat tctactgtgt cctgtcccca gaagcctcag aagatgattt gaaccgactt
     2881 gattctgtgg catgtgatgt tctttactcc aagcttgtca agtatgatga gctctacatt
     2941 gcactgacat ccctgctggc ggctggatcc cagcttgata cagtcaggag aaaggaaaac
     3001 aagaatgtaa cagccctggt aagaccgagg gcctgtgccc ttcaatatta cttcttgata
     3061 ctctggagga ttctagggat tttgccacca tcaaagactt acatgaacca gctggccgtg
     3121 aactcaccag agatgagtga atgtgacatc ctacacactc tgcggtggtc ttcccgcctc
     3181 cggatcagct cctatgtcaa ctggataaag gaccacctta tcaaacaggg aatgaaggct
     3241 gaacatgctg gttctctcct agaactggca tcaagcaagt gcagctcagt gaaatacgac
     3301 gttgaaattg tagaggaata ctttgctcga cagatctcgt ccttctgtag catcgactgt
     3361 accaccatcc tgcagctcca tgaagttccc agtctgcagt ccatctacac cctcgatgct
     3421 gctatctcga aggtccaggt ctctctggat gaacattttt ctaagatggc tgccgagacc
     3481 gatcctcata agtcatctga gatcaccaag aacctgcttc cagccacact gcagctcatt
     3541 gacacctacg catcatttac tagagcctat ttgctgcaga actttaatga ggagggatcc
     3601 actgaaaaac cttcccagga gaaattgcac ggctttgctg ctgttttggc tattggctct
     3661 agtaggtgca aggcgaacac tctgggtcca acactggttc agaatttacc atcttcagtg
     3721 caggctgtgt gtgaatcctg gaacaacatc aacaccaatg agtttccaaa cattggatcc
     3781 tggcgcaatg cctttgccaa tgacacantc ccttctgaga gttacatcag tgctgtgcag
     3841 gccgctcacc tggggactct ttgtggccag agtctgcccc tggctgcttc cctgaagcac
     3901 accctcctct cactggtcag gttgactgga gatcttatag tttggtccga tgagatgaac
     3961 ccgccacagg taattcggac cctgcttccc cttcttctgg agtcgagcac tgagagtgtc
     4021 gctgagatca gtagcaactc tctggagcgc atcctgggcc ctgcagagtc tgatgagttc
     4081 ttggctcgcg tttatgagaa actgatcact ggctgttaca acattctggc taatcatgca
     4141 gatcccaata gtggactgga tgaatccatc ttagaggaat gtctccaata tttggaaaag
     4201 caactggaaa gcagtcaggc tcgtaaagct atggaggaat ttttctctga cagtggagaa
     4261 cttgtgcagg tcatgatggc aacagccaat gagaacctct ctgctaaatt ctgtaaccga
     4321 gttttgaaat tcttcaccaa actcttccag ctgactgaga agagccctaa cccgagcctt
     4381 ctgcatctct gtggttccct ggcacagctg gcttgtgtgg agcctgtgcg tctccaggcc
     4441 tggctcaccc gcatgactgc atcgcccccc aaagattccg atcagctgga tgtgatccag
     4501 gagaacaggc agcttctaca gttgttgacc acgtacattg ttcgggaaaa cagccaagtc
     4561 ggggaaggtg tgtgtgctgt gctgttgggc accctgatcc ccatggcaac agagatgctg
     4621 gccaatggtg atgggactgg tttccctgaa ctcatggttg tgatggctac cctggccagt
     4681 gcaggtcaag gtgctggcca tcttcagctt cataatgctg ctgtggactg gctgagtaga
     4741 tgcaagaaat acctgtcaca gaagaatgtg gtcgaaaaac tgaatgccaa tgtaatgcat
     4801 ggaaagcatg tggtagtcct ggagtgtacc tgccatgtta tgtcttactt ggctgatgtc
     4861 accaatgcct tgagccagag taacggtcaa ggcccaagtc acctctcagt ggatggggaa
     4921 gagcgggcca ttgaagtgga ctcagactgg gtggaggagc tggcagtgga agaggaagac
     4981 tcccaggctg aggattcaga tgaagattct ctttgcaata aattgtgcac ttttaccatc
     5041 actcagaaag aattcatgaa ccagcattgg taccactgtc acacctgcaa aatggttgat
     5101 ggggtgggtg tgtgtacagt atgtgccaag gtgtgccaca aggatcatga gatttcctat
     5161 gccaagtatg gatccttctt ctgtgactgt ggagccaagg aagatggcag ctgtctggct
     5221 ctagtgaagc gaactcccag cagcggcatg agctccacca tgaaggagtc agcatttcag
     5281 agtgaaccca gagtttcaga gagtctcgtg cgccacacca gcacctcccc ggctgacaag
     5341 gccaaagtca ccatcagtga cggaaaggtt gctgatgaag agaagcccaa gaagagcagc
     5401 ctgtgccgca cagtggaggg ctgccgggag gaactgcaga accaggccaa tttctccttc
     5461 gctcctctcg tgttagacat gctcaatttc ctcatggatg ccattcagac caacttccag
     5521 caggcttcag ctgtggggag cagcagccgg gctcagcagg ccctccggga gctgcacaca
     5581 gtggacaagg ttgttgagat gacagaccag ctgatggttc ccacattagg ttcccaggaa
     5641 ggtgcctttg agaatgttcg gatgaattac agcggagacc agggccagac tattcgacag
     5701 ctaatcagcg cccatgtgct caggagggtg gctatgtgtg tgctctcctc ccctcatggg
     5761 cgccgccagc atttggctgt cagccatgag aaaggcaaga tcactgtcct gcagctctca
     5821 gctctcctga agcaagcaga ttccagcaaa aggaagctga ctctgacccg cctggcttct
     5881 gccccagtcc cctttactgt gctgagcctc acggggaatc catgcaagga ggactacctt
     5941 gctgtttgtg ggctgaagga ctgccacgtg ctgaccttca gtagctcagg ctctgtgtcg
     6001 gatcatttgg ttttgcaccc ccagttggca acagggaact tcatcatcaa agccgtgtgg
     6061 ttacctggtt cacagactga gctagcgatc gtcactgcag attttgtcaa gatttatgac
     6121 ctgtccgttg atgccttgag tccaaccttc tactttctcc tgcccagctc aaagataaga
     6181 gatgttacct tcctcttcaa cgaagaggga aagaacatca ttgttataat gtcttcggct
     6241 gggtacatct atacccagct catggaagag gccagcagtg cccagcaggg acccttctat
     6301 gtcactaatg tgctggaaat aaaccacgac gacctgaagg acagtaacag ccaggtggca
     6361 ggtggcggtg tgtctgtcta ctactcgcac gtgttgcaga tgctgttctt cagctactgt
     6421 cagggcaggt cgtttgcagc caccatcagt aggacgacgc tggaggtgtt gcagctcttc
     6481 tccatcagca tcaagagttc caatggtggc agtaagacgt ctcctgccct ttgccagtgg
     6541 tctgaggtga tgaaccaccc tggcttggtg tgttgtgtcc agcaaactac aggagtgccc
     6601 ctggtagtta tggtgaaacc agacactttc ctcatccagg agattaagac tcttcctgcc
     6661 aaagcaaaga tccaggacat ggtcgccatc aggcacacag cctgcaatga gcagcagcgg
     6721 acaacgatga tcttgctgtg tgaggatggc agcctgcgca tctacatggc caacgtggag
     6781 aacacctcct actggcttca gccctccctg cagcccagca gtgtcatcag cataatgaag
     6841 cctgttcgaa agcgcaaaac agctaccatc acaactcgca catctagcca agtgaccttc
     6901 cccattgact tctttgaaca caaccagcag ctgacagatg tggagtttgg tggtaatgac
     6961 ctcctgcagg tctacaacgc acaacagata aagcaccggc tgaattccac tggcatgtat
     7021 gtggccaaca ccaagcctgg tggcttcacc attgagatca gtaacaacaa cagcactatg
     7081 gtgatgacag gcatgcggat ccagattggg acccaggcaa ttgaacgggc cccatcatat
     7141 attgagatct tcggcagaac catgcagctt aacctgagtc gctcacgctg gtttgacttc
     7201 cccttcacca gagaagaagc cctgcaggcc gataagaagc tgaacctctt cattggggcc
     7261 tcggtggatc cagcaggtgt caccatgatc gatgctgtga aagtctatgg caagactaag
     7321 gagcagtttg gctggcctga tgagcccccg gaagagttcc cttctgcctc cgtcagcaac
     7381 atctgtcctg caaacctgag ccagagcaat ggcacgggag acagtgattc agctgcccct
     7441 accaccacga gtggaactgt cctggagagg ctggttgtga gttctttaga agccctggaa
     7501 agctgctttg ctgttggccc aatcatcgag aaggagagaa acaagaatgc agctcaggag
     7561 ctggccactc tgctgctgtc cctgccagcg cctgccagtg tccagcagca gtccaagagc
     7621 cttctggcca gcctgcacac cagccgctca gcctatcaca gccacaagga tcaggccttg
     7681 ctgagcaaag ctgtgcagtg tctcaacaca tccagcaaag aaggcaagga tttggaccct
     7741 gaggtcttcc agaggctggt gatcacagct cgctccattg ccatcatgcg ccctaataac
     7801 cttgtccact ttacggagtc aaagctgccc cagatggaaa cagaaggagc ggatgagggg
     7861 agagaacctc agaagcagtt ggagggggac tgctgtagtt tcatcaccca gctggtgaac
     7921 cacttctgga aactccatgc atccaaaccc aagaatgcct tcttggcacc tgcctgcctg
     7981 ccaggcctaa ctcatattga agctaccgtt aatgctctgg tagacattat ccatggctac
     8041 tgtacctgtg agctggactg tattaataca gcatccaaga tatacatgca gatgctactg
     8101 tgtcctgatc ctgctgtgag cttctcttgt aaacaagctc taattcgagt cctaaggccg
     8161 aggaacaagc ggagacatgt gacgttgccc tcctcccctc gaagcaacac tccaatggga
     8221 gacaaggatg atgatgacga tgatgacgca gatgagaaaa tgcagtcgtc agggatcccg
     8281 aatggtggtc acatccgtca ggaaagccag gaacagagtg aggtggacca cggagatttt
     8341 gagatggtgt ctgagtcgat ggtcctggag acagctgaaa atgtcaacaa tggcaacccc
     8401 tctcccctgg aggccctgct ggcaggcgca gagggcttcc cccccatgct ggacatcccg
     8461 cctgatgcag atgacgagac tatggttgaa ctagccattg ccctgagcct gcagcaggac
     8521 cagcaaggca gcagcagcag tgccctgggc ctgcagagcc tggggctgtc cggccaggca
     8581 cccagctctt cctctctgga cgcaggaacc ctctctgaca ccacagcatc agctccagcc
     8641 tcagacgacg agggcagcac agcagcaact gatggttcca cccttcggac ctcccctgct
     8701 gaccacggtg gtagtgtggg ctcggagagc gggggaagcg cagtggactc ggtggctggc
     8761 gagcacagtg tatctggccg gagcagtgct tatggtgatg ccacagcaga ggggcatccg
     8821 gctggaccag gaagtgtcag ttcaagcact ggcgccatca gcaccaccac cggacatcag
     8881 gaaggagatg gctccgaggg agaaggagaa ggggaagggg aaggagatgt ccacgctagc
     8941 aacaggctgc acatggtccg tctgatgctg ttggagagac tactgcaaac tttgccccag
     9001 ttgcgaagtg ttggaggtgt ccgggccatt ccatacatgc aggtcattct gatgcttact
     9061 acagatctgg atggagaaga tgagaaagac aagggggccc tggacaacct gctctcccag
     9121 cttattgctg aactgggcat ggataagaag gacgtctcca agaagaacga acgcagtgcc
     9181 ctgaatgagg tccacctggt ggtgatgaga ctcctgagtg tcttcatgtc caggaccaaa
     9241 tccggatcca agtcttccat atgcgagtca tcttccctca tctccagtgc cacagcagca
     9301 gccctgctga gctctggtgc tgtggactac tgcctgcacg tgctcaagtc cctgctggag
     9361 tactggaaga gccagcagaa cgatgaggaa cccgtggcta ccagccagct gctgaaacca
     9421 catactacgt catccccacc cgacatgagc ccattcttcc tccgccagta tgtgaagggc
     9481 catgctgctg acgtgtttga ggcctatact cagcttctca cagagatggt actgaggctg
     9541 ccataccaaa tcaaaaagat cgctgacacc aattctcgaa tcccacctcc ggtcttcgat
     9601 cattcgtggt tttactttct ctcagagtac ctgatgatcc agcaaactcc atttgtgcgc
     9661 cggcaagtcc gcaaacttct gctcttcatc tgtgggtcaa aggagaaata ccgccagctc
     9721 cgggatttgc acaccctcga ctcccatgtg cgcgggatca agaagctgct ggaggagcag
     9781 gggatcttcc tccgggcaag tgtggttaca gccagctctg gctccgccct gcagtatgac
     9841 acgctcatca gcctgatgga gcacctgaaa gcctgtgcag agattgctgc ccagcgaacc
     9901 atcaactggc agaaattctg catcaaagat gactctgtcc tgtacttcct tctccaagtc
     9961 agcttcttgg tggatgaggg ggtgtctccc gtgctgctgc agctgctctc ctgtgctctg
    10021 tgcggcagca aagtcctcgc tgcactggcg gcctcggcag ggccctccag tgcttcctcc
    10081 tcctcagccc ctgtggccac tggttctgga caagccacaa cacagtcaaa gtcgtccaca
    10141 aagaagagta agaaagaaga aaaggaaaag gagaaagagg gtgagagctc aggaagccag
    10201 gaggatcagc tgtgcacagc tctggtgaac cagctgaaca aatttgcaga taaggagacc
    10261 ttggtccagt ttctgcgttg cttcctctta gagtccaatt cttcctcggt gcgctggcag
    10321 gcccactgcc tgacactgca tatctacaga aactctagca aatctcagca ggagctcctg
    10381 ctagatctga tgtggtctat atggccagaa ctcccagcct atggtcgtaa ggctgcccaa
    10441 tttgtggacc tactaggata tttctccttg aaaaccccac aaacagagaa gaagttgaaa
    10501 gaatattcac agaaggctgt ggagattctt cgtactcaga accacattct taccaaccat
    10561 cccaactcca acatttacaa caccttgtct ggcctagtgg agtttgatgg ctattacctg
    10621 gagagtgatc cctgcctggt gtgtaataat ccagaagtgc cattttgtta tatcaagctg
    10681 tcttccatta aagtggacac aaggtacacc accacccagc aggttgtgaa gctcattggc
    10741 agccacacca tcagcaaagt gacggtgaaa attggggacc tgaaacggac caagatggtg
    10801 cggactatca acctttatta caacaaccga actgtgcagg ctatcgtgga gctgaaaaac
    10861 aagccagctc gctggcacaa agccaagaag gttcagctga cccccgggca gacagaggtg
    10921 aagatcgacc tgcctttgcc aatagtggct tccaacctga tgattgagtt tgcagacttc
    10981 tatgaaaact atcaggcctc cacggagacc ctgcagtgcc cacgctgtag tgcgtcagtc
    11041 cctgccaacc caggggtctg cggcaactgt ggagagaatg tctaccagtg tcacaaatgc
    11101 agatccatca actatgatga aaaggacccc ttcctgtgca atgcctgtgg cttctgtaaa
    11161 tacgctcgct tcgacttcat gctctatgcc aagccttgct gtgcagtgga tcccattgag
    11221 aatgaagaag accggaagaa ggctgtttcc aacattaaca cacttctgga caaagctgat
    11281 cgagtgtatc accagctgat gggacatcgg ccacagctgg agaacctgct ctgcaaagtg
    11341 aacgaggcag ctcctgaaaa gccgcaggat gactcgggga cggctggggg catcagttcc
    11401 acctcagcca gtgtgaaccg gtacatcctg cagttggcgc aggagtactg tggggactgc
    11461 aagaactctt tcgatgaact ctccaaaatc atccagaaag tttttgcttc acgcaaagag
    11521 ttgctggaat acgacctgca gcagagggaa gcagccacca aatcatctcg gacctccgtg
    11581 cagcccacct tcactgccag ccagtaccgc gccttgtccg tcctgggctg tggccacaca
    11641 tcctccacca agtgctacgg ctgcgcctcg gccgtcacag agcactgtat caccctgctc
    11701 cgggccctgg ccaccaaccc cgccctgagg cacatcctcg tctcccaggg cctcatcagg
    11761 gagctctttg attataatct tcgcagaggc tctgcggcca tgcgggagga ggtccgccag
    11821 ctcatgtgcc tcctgacccg ggacaatcca gaggccaccc agcaaatgaa cgacctgatt
    11881 attggcaaag tctccacagc cctgaagggc cactgggcca atcctgatct ggcaagtagc
    11941 cttcagtatg aaatgctgtt gctgacagac tctatctcga aggaggacag ctgctgggag
    12001 ctccgcttac gctgtgcact cagccttttc ctcatggccg tgaacattaa gactcccgtg
    12061 gttgttgaga acattaccct catgtgcctg cggatcttgc agaagctgat taaaccacct
    12121 gctcccacca gcaagaagaa caaggatgtt cctgtcgagg cccttaccac agttaagcca
    12181 tactgcaatg agatccatgc ccaggctcag ctctggctca agagagaccc caaggcatcc
    12241 tatgaagcct ggaagaagtg tcttcctatc agagggatcg atggcaacgg gaagtccccc
    12301 agcaaatcag agctccacca tctctatttg actgagaagt acgtgtggcg gtggaagcag
    12361 ttcctgagtc gtcgggggaa gaggacctcc cccttggatc tcaagctggg ccacaacaac
    12421 tggctgcggc aagtgctctt tactcccgcg acgcaggctg cacggcaggc agcctgtacc
    12481 atcgtggaag ctctggccac cattcccagc cgcaagcagc aggtcctcga cctcctcacc
    12541 agttacctgg acgagttgag cgtagcaggg gagtgtgccg ccgagtacct ggcgctctac
    12601 cagaagctca tcacttcagc tcactggaaa gtctacctgg cagctcgagg agtcctgccc
    12661 tacgtgggca acctcatcac caaggaaata gcccgcttgt tggccttgga ggaggccacc
    12721 ctgagcactg atctgcagca gggctatgcc ctcaagagtc tcacaggcct tctttcctcc
    12781 ttcgtggagg tggaatccat caaaaggcac tttaaaagtc gcttggtggg tactgtgctg
    12841 aatggatacc tgtgcttgcg gaagctggtg gtgcagagga ccaagctgat tgacgagacc
    12901 caggacatgc tgctggagat gctggaggac atgaccacag gtacagaatc ggaaaccaag
    12961 gctttcatgg ccgtgtgcat tgagacagcc aagcgctaca atctggatga ctaccggact
    13021 cctgtcttca tctttgagag gctctgcagc atcatctatc ctgaggagaa tgaagtcact
    13081 gaattctttg tgaccctgga gaaggatccc caacaagaag acttcttaca gggcaggatg
    13141 cccgggaacc catacagcag caatgagcca ggcattgggc cactcatgag ggatataaag
    13201 aacaagattt gccaggactg tgacttggtg gctctcctgg aggatgatag tggaatggag
    13261 cttctagtga acaataaaat cattagtttg gaccttcctg tggccgaggt ttacaagaag
    13321 gtctggtgta ccacgaatga gggcgagccc atgaggattg tttaccggat gcggggtctg
    13381 ctgggcgacg ccaccgagga gtttatcgag tccctggact ccaccacgga cgaagaagaa
    13441 gatgaagaag aagtgtataa gatggctggt gtgatggccc agtgtgaggg cctggaatgc
    13501 atgcttaaca gactggcagg gatcaaagac ttcaagcagg gacgccacct tctaacagtg
    13561 ctgctgaaat tattcagtta ctgcgtgaag gtgaaagtca accggcaaca gttggtcaag
    13621 ctggaaatga acactttgaa tgtcatgctg gggactctca acctggccct ggtagctgag
    13681 caagaaagca aggacagtgg tggtgcagct gtggccgagc aggtgcttag cattatggag
    13741 atcattctgg atgagtccaa tgctgagccc ctgagtgagg acaagggcaa cctcctcctg
    13801 acgggtgaca aagatcaact cgtgatgctc ttggaccaga tcaacagcac ctttgttcgc
    13861 tccaacccca gcgtgctcca gggcctgctt cgcatcatcc catacctgtc cttcggggag
    13921 gtggagaaaa tgcagatctt ggtggagcgg ttcaaaccat actgcagctt tgataagtat
    13981 gacgaagatc acagtggcga tgataaagtc ttcctggact gcttctgtaa aatcgcagct
    14041 ggcatcaaga acaacagcaa tgggcatcag ctaaaggatc tgattctcca gaagggaatc
    14101 acccagaatg cacttgacta tatgaaaaag cacattccca gtgccaagaa tttggatgct
    14161 gacatctgga aaaagttttt gtctcgccca gccctgccgt ttatcttgag acttcttcgg
    14221 gggctggcca tccagcaccc tgccacccag gttctgatcg gaaccgactc cattacaaac
    14281 ctgcataaac tggagcaggt gtccagcgat gagggcattg ggaccctggc agagaacctg
    14341 ctggaggcac tgcgggaaca ccctgatgta aacaagaaga tagacgcggc ccgcagggaa
    14401 acccgggccg agaagaagcg catggccatg gccatgaggc agaaggctct gggcacgctg
    14461 ggcatgacga ccaatgagaa gggccaggtc gtgaccaaga cggcgctcct gaagcagatg
    14521 gaggagctga tcgaggagcc gggcctcaca tgctgcatct gcagggaggg gtacaagttc
    14581 caggtgcggt cagtcctggg catttatacc ttcaccaagc gggtagcctt agaggagatg
    14641 gagaacaagc cccggaaaca gcagggctac agcaccgtgt cccacttcaa catcgtgcac
    14701 tacgattgcc acctggctgc cgtcaggctg gctcgaggcc gggaagagtg gggaaagtgc
    14761 cgcccttcag acgccaacac taagtgcaac ggtctccttc ccgtctgggg gccccatgtt
    14821 cctgagtcag cttttgccac ctgtctggca aggcacaata cttacctcca ggagtgcacg
    14881 ggccagcggg agcccacgta ccagctcaac atccacgaca tcaagctgct gttcctgcgc
    14941 ttcgccatgg agcagtcctt cagcgcggac actggagggg gcggccggga gagcaacatc
    15001 cacctgatcc cgtacatcat ccacaccgtg ctttacgtcc tgaacagaac ccgagcaact
    15061 tcccgagagg agaagaacct ccagggcttt ctggagcagc ccaaggagaa gtgggtggag
    15121 agtgcctttg aagtggacgg gccccactac ttcactgtcc tagccctcca cgtcctgccc
    15181 cccgagaagt ggcgagccat acgcgtggaa atcctgcggc ggctgctggt gacctctcag
    15241 gcccgggcag tggctccagg gggagccacc aggctgacag acaaggcggt gaaggactac
    15301 tctgcttatc gctcttccct tctcttttgg gccctcgttg atctcattta taacatgttt
    15361 aagaaggtgc cgaccagcaa cacggagggt ggctggtcct gctctctggc agaatacatc
    15421 cgccacaacg acatgcccat ccacgaagct gccgacaagg ccctgaaggc cttccaggag
    15481 gagttcatgc cagtggagac cttctcagag ttcctcgacg ccgctggtct cttatcagaa
    15541 atcacggatc cggagagctt cctgaaggac ctgttggact cagtcccctg agcaccacac
    15601 gaaacggcgg tcgacagaga tggaagctag cctgcctctg tgttctcccc tcctgtgtgt
    15661 gatttccgcc acgggttgct gcatcgttgc tccatcattg ctcctccctc ctccctccct
    15721 cacttttctt ggagtggctt ggggatttta ggcttcctgt tttatctcgt gtgtgtggtg
    15781 cactagctat gaagttgtct gtaacccaag ccgtcgaagg acctgtacat acctgggagc
    15841 cacgagctgt cctggccaac tgaatacttg agtgtgcgca tcttgagaaa taaacaaatg
    15901 acttaataca cattgaaaa
//
LOCUS       XM_032608214            8374 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kelch domain containing 7A (KLHDC7A),
            mRNA.
ACCESSION   XM_032608214
VERSION     XM_032608214.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8374
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8374
                     /gene="KLHDC7A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741516"
     CDS             909..3293
                     /gene="KLHDC7A"
                     /codon_start=1
                     /product="kelch domain-containing protein 7A"
                     /protein_id="XP_032464105.1"
                     /db_xref="GeneID:116741516"
                     /translation="MLPRGEGAEAQGCHLDMQLVGKVVLSAAVLLLATAAYRLYKPRP
                     AQAPLGGGNAKAEAKDEAEGSRQPAIQEAVSGAPQWGLRRRRGSKGAGVSLGCSWENP
                     EGPRVLATGAPPADSEAQATGKPERKCAGEEPGGQRTDSGLAPPRGSGQEAGTAAGGK
                     LSRRPHWCSEPQSSLTGLAAAAGSDVSGELAPWRDSRSQEQLGAGEQESPNRCGAAHT
                     EGESDMNKSWVFTRVTGVHREEAGALRAASDMGLALRQQEGATEASYTFLSVARVRVE
                     ENFIPEKMEGTRPRLKRKVYDYCVESTCQATSRARLAPRTAALAEAPPPVSGPGPLGV
                     GAASGGQADDRVGGVGTAATPEPVLSPSAQGFSRKQSLLQIVENPELQLQLEGFGDPA
                     PSCPDQSALPTSPISQDSLGSSSAGSSGKPHLHFVAGANFFHLPLSPGSAPDAHLDLG
                     NCYEVLAFAKKQSLEALKEAAYKVMSDNYLQVLRSPDIYGCLSGAERELILQRRLRGR
                     KHLVVADMCPQEDSSRLCCYDDERDVWHPLARVPPEAVSRGCAVCSLFNYLFIVSGCQ
                     GSGHQPSNRVFCYNPLTGIWSEVCPLNQARPHCQLVALDGHLYAIGGECLNTVECYDP
                     RLDRWTFSPPLPSDTFALAHTAAACAGEIFVTGGSLQYLLLRFSTLEQRWRAGPTGGG
                     KDRTAQMVAVKGFLYRFDLNRSLGISVYRCSASTRLWYECATHRTPYPDTFQCAVVDD
                     LIYCVGRQRTLRFLADYVSPRFVPEELQSFPSPQGTLLPTVLILPGPDVPQTSV"
     misc_feature    <1221..2237
                     /gene="KLHDC7A"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2247..2474
                     /gene="KLHDC7A"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     Kelch repeat and BTB domain-containing protein 11
                     (KBTBD11); Region: BACK_KBTBD11_CMLAP; cd18484"
                     /db_xref="CDD:350559"
     misc_feature    2487..3071
                     /gene="KLHDC7A"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; Region: NanM; COG3055"
                     /db_xref="CDD:442289"
     misc_feature    2544..2687
                     /gene="KLHDC7A"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    2694..2819
                     /gene="KLHDC7A"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    2829..2942
                     /gene="KLHDC7A"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    2958..3077
                     /gene="KLHDC7A"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 cggaaggagg gaggcaccag gaaggaggca caggaggcag cctttgacct gactcagatg
       61 gctggaggaa tgtggaccag caaagatggg ggaaaagcct gagccccagc ccagagccag
      121 atgaagaaac tgaggcacag agaggtgaaa tcacttgcct agcagagcaa ggcaagagct
      181 gtagcagagc tgtgtggcct agatccgaaa cccacagctc cggtgagatg agcggcggga
      241 aggccggttt tcctagtcaa cttatcaggc agggaaggag ggcagagtca cgcaggagcc
      301 agttcggtgg tttggccgca gtccccagct cagcctcacc tgctgctgac tgcggacccc
      361 accccccacc gaggggaaca accaacctca acaggaagaa aacagacccg ggaggttctc
      421 ctgccatgcc tgccgtgact ccacctgccc cacaagtcac cacacccaac cctcccagcc
      481 cagtggattt gcaaaagaga aaacaaaaca cacacacaaa taatcaccaa ccccgtgcct
      541 ttcctggcat ccggtgactg ttaggtcaag aggtccctcc ctctccgtgt acccgctgga
      601 cactcctaac cctctccagc tgctgccggc tcgggcggat tatcacaagc tcagcccccg
      661 gcaggtgcct cccactccca gggaaagcag cgaaggatcc aaggaggcca gcagccgaga
      721 tctgccagcc ctgagcccca ccggccaccc tctgccagct caaagtcacc tttgccacaa
      781 ctcctccgct gggcagccag cccaaggccc ccatccctct cagctcggca ggaaccagga
      841 accgctccct actgggcaat cattaatcgg attcttgaca ttcctctgcc ccaggtcggc
      901 ttgggaacat gctccccaga ggagagggag cagaggccca gggctgccat ctggacatgc
      961 agctggtggg caaggtggtg ctgtctgccg ctgtcctgct cctggcgacc gcagcctaca
     1021 ggctgtacaa gccaaggcct gcccaggccc ccctgggggg tgggaacgcc aaggctgagg
     1081 ccaaggacga ggcagagggc tccaggcagc ctgccatcca ggaggctgtt tccggggcgc
     1141 cacagtgggg cctgagacgc cggaggggaa gcaagggggc cggagtatcg ctgggctgca
     1201 gctgggagaa tccggagggt cccagagtcc tggcgacagg agcacctcct gcagactcag
     1261 aagcccaagc gactgggaaa cccgagagga aatgtgctgg tgaggaaccg ggtgggcagc
     1321 gcacggactc tggcctggca cctcctcggg gcagtggcca ggaagccgga acagctgctg
     1381 gcggtaagct gtcccgtcgc ccccattggt gcagtgaacc ccaaagctcc ctaactggcc
     1441 tcgctgcagc ggccggcagc gatgtgagtg gtgagcttgc cccatggcgg gacagcagat
     1501 cccaggagca gctgggggcc ggggagcagg aatcccccaa ccggtgtggg gcggcccaca
     1561 cagaaggcga gagtgacatg aacaagagct gggtctttac ccgtgtgaca ggggtccaca
     1621 gggaagaggc tggggccctc cgggctgcct cggacatggg tctggccctg cgtcagcagg
     1681 agggagccac cgaggcctcc tataccttct tgtctgtggc ccgggttcga gtggaggaga
     1741 atttcatacc ggagaagatg gaggggacca ggcccaggct gaagcgcaag gtgtacgact
     1801 actgtgttga atccacctgt caggccacct ccagggccag gctggccccc agaacagcag
     1861 ccctggcgga ggctccaccc cctgtgtcag ggccaggccc cctgggagtg ggggcagcct
     1921 cgggaggcca ggccgatgac agagtaggtg gagtggggac agctgccact cccgagcctg
     1981 tgctgtcacc ctccgcacaa ggcttcagca ggaagcagag cctccttcag atcgtggaga
     2041 acccggagct tcagctgcag ctcgaaggct ttggggaccc tgcgccatca tgcccagacc
     2101 agagcgccct gcccaccagc cccatatccc aggattctct tgggtccagc tcagctggaa
     2161 gcagcgggaa gccccacctg cactttgtgg ctggggccaa tttctttcac ctcccgctca
     2221 gccctggatc agccccagat gcccacctgg atctgggcaa ttgttatgag gtgctggcct
     2281 ttgccaagaa gcagagcctg gaggccctga aggaagccgc ctacaaggtg atgagtgaca
     2341 actacctcca ggtcctgcgc agcccagaca tctacgggtg cctgagtggg gcagagcggg
     2401 agctgatcct ccagagacgg ctccggggcc gcaagcacct ggtggtggcc gacatgtgcc
     2461 cccaggaaga ctccagccgc ctctgctgct atgatgacga gcgggatgtc tggcacccgc
     2521 tggcccgtgt gccccctgag gctgtgtccc ggggctgtgc cgtctgtagc ctcttcaatt
     2581 atctcttcat cgtgtccggt tgccaggggt ctgggcacca gccctccaac cgtgtcttct
     2641 gctacaaccc gctgacgggc atctggagtg aggtgtgccc tctgaaccag gcccgccctc
     2701 actgccagct ggtggccctg gatggacacc tgtacgccat cgggggtgag tgtctgaaca
     2761 cggtggaatg ctacgaccct cgcctggacc gctggacctt ttccccgccg ctccccagtg
     2821 acacctttgc cctggcgcac acagccgcgg cgtgtgccgg agagatcttc gtcaccggcg
     2881 gctccctgca gtacctgctg ctccgattct ccaccctgga gcaacgctgg cgggccggcc
     2941 ccactggggg cggcaaggac cgcacagccc agatggtggc ggtcaaaggc tttctctatc
     3001 gctttgacct caaccgcagc ctgggcatca gcgtgtaccg ctgcagcgcc agcacccgcc
     3061 tctggtacga gtgcgccaca catcggaccc cttacccgga caccttccag tgtgccgtgg
     3121 tggacgacct catctactgt gtggggcgcc agcgcaccct ccgcttcctg gccgactacg
     3181 tctcacccag gtttgtgccc gaggagctac agagcttccc ctccccgcag ggcaccctcc
     3241 tgcccaccgt cctgatcttg cccggccctg atgtgcccca gaccagcgtc tagtggcccc
     3301 tctgctgggc cccttctgca aaactagagg caaaaacatc ccctacccat cctccatgga
     3361 ccatttctgg gagatcaggc ggcctgggaa tctggccagc aggaggtgaa ttccagtcct
     3421 ttctcctcca ctggctggac ttcttagctg catctttgcc cccatcgggc tacagaagcc
     3481 cagtgtggaa atggaactcg ggactggtgc tctgaggccc aggatgccca cgtccgcagg
     3541 gatggccatc accttgcttg agctctgaat ggggggcagg taccaggacc ccagccaagt
     3601 tcaggggcac agccttatcc cagtcctggt tctgagggcc agttgacccc caatgacccc
     3661 tcaagctgac cctgctggat ctgggctaga cctccataag ccgccagggc ctcttcctaa
     3721 atattggcca ctgagcccca acctccaaga ttcccagaag cacctgggac acacaggtgg
     3781 ggaaaatgaa gggaggcggc tccagcagga ccaggaagga gcccaggaga gccccagggg
     3841 gcccggccag agggagagat ggttggagaa gcagaacagc tgaagttgga acagcccacg
     3901 gagctcttgt ctgcagaata aatcgaccga agcccacttt aatttttctc attacctgga
     3961 attctagtat actggaagga ggagaagcct ccattttcag catccgtttg taaaggcacg
     4021 tcttcttgca gggtttactg agaatacaat tgcttctgaa ggcgaggaaa aaatgtgatc
     4081 cgagggccat cgtctgctgg gcttgctgtt atatgaccac tgcactctct ccccagatct
     4141 cagaaccctt cacaatacag ctccccaagc aacccagccc tcgccttgga gctgggggga
     4201 cagccaccac cagtcagccc ttccaggtgg tgagaggtga cggcatcctt tgccctccct
     4261 gtgccctgtg gtcacctggt ctcatcagac aggagaggac cagggagggg caggtccatg
     4321 atggagctgg ggaactagaa ggttctagtg gtgcattggg agactgggat ctcctttcat
     4381 atcaggtttg gtaaattctc aaagggaaga aactctccaa cctcaggaag ttacctctct
     4441 tcccagaggg aggggagaga gactggtcca atctattact gcagccctgt tccatctcca
     4501 aaggagacac atatacagaa aagcgagcag cgatgccctt ggtcccagcc agaagccagg
     4561 aagctgggac cacttctaaa gcggcaagct gcatgaggaa agcagcagag aagggcggtg
     4621 caccagggca ggtcccacag gtggggggac aggaatgctc agacttcagc atccctatct
     4681 taaaaatggg aagcaccacc catgtcctcc tctgcctggg ggataaaggt gagcacctgg
     4741 agaaagttct tcccagttct gcggggtcct ggcaggatct tgtgttcact gcagctgttg
     4801 gggctgatct ggggtgggag atctttttag aagatgcaga attggaacaa agaatgagag
     4861 gaggttggta cagaggcgaa gccttttctt ggaccgcaca aggctacctt ccctattcta
     4921 ggacttggga ggcgaagctg cttagtttat ttctaagttg gaaggtgggg aatgaaagat
     4981 tgctgggact acggctggag cctgcggagg gtgacctcct ccccaaaccc ctccgccaca
     5041 aaggccacgc tcaagttcag agtcaacact caggcatgaa cctccaaggg acccagggga
     5101 attggagatg tgatgccagg tggggagaag ggtctgctca gaaggagaac cccatctggg
     5161 agctggggca ggtagagcca gatccagccc caggggcagg tctccggtaa ggagcccggc
     5221 aggggacaag acctcagcca agctgggtag ggtgtgggga agggctccaa gccaagggtg
     5281 agctagggat cactctggaa aacttccaga agcccattgc atacatatgg cagggactag
     5341 ggagatggat caagggataa ggcaacagag cttgttctag gtggtggatg tggtcttcat
     5401 gatgagaggg agagctgaga cttgagcctg ggttcaggta cgccacacat cttgtctgcc
     5461 tcctatggtc ccatggcaga catcactaag ccatcaccat gtcttttctt gttgagctct
     5521 ttcaatggcc tcagaactct ttcagcatgg agccccaggc agtcattact gatagattag
     5581 agctgtgcat tttttattcc tggcctgggt ctccagagct gggtttaggg atgagagtgg
     5641 tcagggctgt cgtgttaggg caaggttcag ggggcctgca aaaaccacct ggggccgtga
     5701 tggtcagggc tcatttacag actgtttaag ccaggcgctg ttccgggtgt tggagataca
     5761 atacatccct gccctaatag acctcacatt ctagctgtag aaaacaggca attttagaaa
     5821 acaaatacat aaacaaacaa atagaaccca tgctgcatac aggccataga gaaagagaag
     5881 gcaggcaagt gagatcgtgt gatcaggctc cctgataaga agaagctggg cagagccctg
     5941 agtggaaatc tggaagatgc aaagaccaag actggctcag ggcctgggag ggctgtctct
     6001 gcctcctgaa tgactttgcc acgccagcgg aggagggcag gagtgcctcc caggcactcc
     6061 atcctgttgt gtgaggaggg caggagccca gctatttgct ttagcctttc ctgtgaggga
     6121 aaaaatctca ttacaccaac agttatgaaa gagggtcttt agatagaggt aagctacatt
     6181 cccaagagag aagcagagtt tgcaccttta agggtgagag tcaaaataac acacagacgt
     6241 cacacctgag tgtgtggctg ggtgtcagtg agcccatatg actccatgaa atcagagtct
     6301 aggatttcca cttgaccttt ttaataacct tgtctcttgc cctctagccc tcagccgcag
     6361 agtgacctgt gtgtcactgg gcttctccat gggtcatcta ttcctgcttt cccagtaaga
     6421 gttctttctt ctttaggaaa aaaaaaaaaa acaagtttgt gttgctttgc accttaggcc
     6481 aaccatgcca ttataggacg aaaattggaa aatagagaaa agtataaaaa atctccccag
     6541 tttcgccacc caaagacaga cgccccccgc ccccgccact gtggtgtagg tccctccggt
     6601 ctgcttttct tgtgcgtgat ttttgtttgg cttgattttt gcctagatgt gattgtgttg
     6661 agtatacaat tcagttgctt ccctttttta cttagcttta tagaataggc gttttcccgt
     6721 gttattacaa accctcggta aacgtcattt ccatagatgc agaatattcc atccagtgga
     6781 cctgccatgg tttatttaaa cattcccccc tccttcaggc ctgtagatgt tttttttttt
     6841 tttttttttt ctgttggttt ctttttctat cataaataaa acgtcttttg ttttcgcgtt
     6901 cctctctgtc tgaggcctcc atcaatgttt acaagagaag ctcagcctcg gttctgtctg
     6961 gaagagccag gctgttgaaa caaccataga aaccacagca gttgcctggg gcggggacct
     7021 ggccctgctt ttactgtagg gcacagagct gcccttggaa atgaccagca agaaagacaa
     7081 ggccggaggc cctcctgtcc tatgggattc ctggagccag gatgtaatat aaggacccct
     7141 gctctgcaca caccaggaac tgagctacat gcttcctaca cctcccctca tttatcctca
     7201 caacaagccc attttacagg tgagaaaact gaggctcggt gagttcaagg aaacttgcct
     7261 ccatggcaaa gtccaaaaga ccctcaattt ccttaaaagc atccttaaac ctggcctgcc
     7321 cactctcagc accttgctat ttccattccc ctaccatgag gtgcagagcc aaggacttgg
     7381 cctcagctgt ctcgtgggcc gcccctaatc cctgtctgtc ccccaccaat caattatgct
     7441 ctatccttga atttggaact caaaagaaat tgtcttaagc tctctgatcc tccatatctg
     7501 caactgtaaa gtggctttgc cactgccagc ctcgcgagaa tgttataaga actaacgaga
     7561 gaatatgtgt aaagcacccg gctgctccag tggtgccgga gtggctgctc ccaaagtcgg
     7621 tctcagaaga agcatcgtct tctgcaggga gggtgctctg agccacctcg gggggagggg
     7681 cctctcctac tcccactccc ctttctcagt gtcctggccc ctgaggaagg aggttgtctg
     7741 gcatttaagc ccaagaggcc ccatcttgtg taacaaggtg tagggactgg gggaggatgc
     7801 tcaaatcacg catattttag accatccagg ctttgagaca agcctgtaca atcctctacc
     7861 agggtgagtg actggttggt atgagtttcc caagctcaaa gcattaagca tttccccagg
     7921 tcatccgaca gcagtgaaga gcttcagagg ctgcccggga gtccctggaa accctgagaa
     7981 ggtgcaaggt ggagggggct cctttctctt gcagatgggg gttaagaacc cctcagagca
     8041 cctgggaggc ccatgcgctg tgtctaggtg cccggcactt tccaccttgg tcattcttac
     8101 ctggaagggc cctgtggccc cagggtcacc ctcagagtcc cctgaagctg cagctgcagc
     8161 caggaggaac cccctaggca gatgggagac tgcggtggag gaagggggat gaaacacaaa
     8221 gggaggaggt gccttcagag agcggagatg agaagagagg cagctgggga gccagaagaa
     8281 aggatagcct gaaggcgagt ctctacaaac agctgagact caggcttttt gaaaagtggg
     8341 atgtgggtca aaataaaaca aaatgaaaaa gcga
//
LOCUS       XM_032608225            4125 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus laminin subunit beta 3 (LAMB3),
            transcript variant X1, mRNA.
ACCESSION   XM_032608225
VERSION     XM_032608225.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4125
                     /gene="LAMB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 19 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741523"
     CDS             215..3733
                     /gene="LAMB3"
                     /codon_start=1
                     /product="laminin subunit beta-3 isoform X1"
                     /protein_id="XP_032464116.1"
                     /db_xref="GeneID:116741523"
                     /translation="MRLLLLLYFVLPSILCAQQACSRGACYPPVGDLLIGRTRFLRAS
                     STCGLAKPETYCTQYGEWQMKCCKCDSRLPHNYNSHRVENVVSSSGPMRWWQSQNDVS
                     PVSLQLDLDRKFQLQDIMMDFKGPMPAGMLIERSSDFGKTWQVYQYLAADCMSAFPRV
                     RRGQPQSWQDARCQPLPQRPNSRLDGAKVQLNLMDLASGIPATQSQKIQELGAITNLR
                     VNFTRLASVPQRGYHPPSAYYAVSQLRLQGSCFCHGHADHCAPNSRAPASPSTTVQVH
                     GVCVCQHNTAGPNCEHCAPFYNNKPWKPADDQDPHECQRCDCNGHSETCHFDPAVFTA
                     SQGAHGGVCDNCQHHTEGKNCERCQLHYFRNRRPDAPIQETCIPCECDPDGAVPGAPC
                     DPVTGQCVCKEQVQGERCDLCKPGFTGLTYANPQGCHRCDCSVLGARRDMPCDEESGR
                     CLCLPHVVGPKCDQCARYHWKLASGRGCEPCACDPHNSLSPQCNQFTGQCPCQEGFGG
                     LTCNAAAIRQCPDKTYGDAAMGCRACDCDFRGTEGPGCDKASGRCLCRPGSTGPRCDQ
                     CQRGYCDRYPVCVACHPCFQTYDTGLRERALRLSSLRNATTSLWPGPGLEDRGLASRM
                     LDTKNKLEQIQAILGGASVTEQEVAQVANGIVSIRQTLQGLQVDLPLEEEILSLPGDL
                     ENLDRSFNRLLVMYQSKREQFEKISSADPSGAFQMLTAAHQRSSQAAQQVADSSRRLL
                     RLRDSRREAESLEQQLGGAGGAGGPQLAALRLQMASLPDLTPAANKLCGGPREMACTP
                     GACPGELCPRDNGTACGSHCRGALPSAGGAFRTAGQVAEQLRGFKAQLQQTRQMIRAA
                     EEATLQVQSDAQSLEMQVSTSRSQMEEDVTRTRLLIQQVRDFLSDPDTDVATIQEVSE
                     AVLALWLPTDSATVLRKMNEIQAIAARLPNVDLVLSQTKQDIARARRLQAEAEQARSR
                     AHTVEGQVEDVLGNLRQGTLALQEAQDTMQGTRRSLQRIQDRVAEVQQVLGPAERLAT
                     SLMEQLGGFRARMEELGHRARQQRAQAAQAQNLAEEASKQALSAQEGFERIKQKYAEL
                     KDRLGQSPTLGEQGSRILSIKMEAEELFGETMAMMDKMKDMESELLRGSQAIMLRSAD
                     LTGLEKHVEQIRNHINGRVLYYATCK"
     misc_feature    272..958
                     /gene="LAMB3"
                     /note="Laminin N-terminal (Domain VI); Region: Laminin_N;
                     cl02806"
                     /db_xref="CDD:470680"
     misc_feature    959..1132
                     /gene="LAMB3"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; Region: EGF_Lam;
                     cd00055"
                     /db_xref="CDD:238012"
     misc_feature    order(962..964,968..970,1028..1030,1049..1051,1055..1057,
                     1082..1084)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1160..1312
                     /gene="LAMB3"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(1160..1162,1166..1168,1187..1189,1241..1243,
                     1250..1252,1277..1279)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1349..1498
                     /gene="LAMB3"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(1349..1351,1355..1357,1388..1390,1409..1411,
                     1415..1417,1442..1444)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1505..1648
                     /gene="LAMB3"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(1505..1507,1511..1513,1544..1546,1565..1567,
                     1571..1573,1598..1600)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1655..1816
                     /gene="LAMB3"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(1655..1657,1661..1663,1691..1693,1712..1714,
                     1718..1720,1745..1747)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1814..1927
                     /gene="LAMB3"
                     /note="Laminin-type epidermal growth factor-like domai;
                     Region: EGF_Lam; smart00180"
                     /db_xref="CDD:214543"
     misc_feature    order(1814..1816,1820..1822,1850..1852,1871..1873,
                     1877..1879,1904..1906)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    <2732..>3559
                     /gene="LAMB3"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    3518..3730
                     /gene="LAMB3"
                     /note="C-terminal coiled-coil domain found in the laminin
                     subunit beta (LAMB) family; Region: cc_LAMB_C; cl40438"
                     /db_xref="CDD:424069"
     misc_feature    order(3524..3529,3536..3541,3545..3550,3557..3559,
                     3578..3583,3587..3592,3599..3601,3608..3613,3620..3625,
                     3629..3637,3641..3646,3653..3655,3662..3667,3671..3679,
                     3683..3688,3692..3700,3704..3712,3716..3727)
                     /gene="LAMB3"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411969"
ORIGIN      
        1 ggcgtgccag ctgccagatt cctgagtccc gccctgcagt gggtgacgcc cagccaggac
       61 gtctccagag gtgaggccgt tgtttaaaac ctaggagcca ggagagggga ctcccacatt
      121 caaggcgtgc tctcagagag gtgatctgga gaaagaaccg cggcagcacg gagtggggtg
      181 aggtcctggg tggggatcat cccattggct gaagatgagg ctgctccttc tcctgtattt
      241 tgtcttgccc agcatcctgt gtgcccagca agcctgctcc cgtggggcct gctatccacc
      301 cgttggggac ctgctcattg ggaggacccg gtttctccga gcttcatcta cctgtggcct
      361 ggccaagcct gagacctact gcacccagta tggagagtgg cagatgaaat gctgcaagtg
      421 tgactccagg ttgcctcaca attacaacag tcaccgagtg gagaatgtgg tctcatcctc
      481 gggccccatg cgctggtggc agtcacagaa tgatgtgagc cctgtctctc tgcagctgga
      541 cctagacagg aaattccagc ttcaagacat catgatggat tttaaggggc ccatgcctgc
      601 tggcatgctg atcgagcgct cctcggactt cggcaagacc tggcaggtgt accagtacct
      661 agctgccgac tgcatgtctg ccttcccccg ggtccgccgg ggccagcctc agagctggca
      721 ggatgctcgg tgccagcctc tgccccagag gcctaacagc cgcctggatg gggccaaggt
      781 ccaacttaac cttatggatt tagcctctgg gatcccagca actcaaagtc aaaaaattca
      841 agagctgggg gcgatcacaa acttgagagt caacttcacc aggctggcct ctgtgcccca
      901 gaggggctat caccctccca gcgcctacta tgctgtttcc cagctgcgtc tgcaggggag
      961 ctgtttctgt cacggccatg ctgaccactg tgcccccaat tccagagccc ctgccagccc
     1021 ctccaccact gtgcaggtcc atggggtctg cgtctgccag cacaacaccg ccggccccaa
     1081 ctgtgaacac tgtgcaccct tctacaacaa caagccctgg aaacccgcag atgaccagga
     1141 cccccatgaa tgccaaaggt gtgactgcaa cggacactca gagacatgtc atttcgaccc
     1201 agccgtgttt accgccagcc agggggcaca tggaggtgtg tgtgacaact gccaacacca
     1261 cactgagggc aagaactgtg agcggtgtca gctgcactat ttccggaacc ggcgtcctga
     1321 tgctcccatt caggagacct gcatcccctg cgagtgtgat ccggatgggg cagtgccagg
     1381 agcgccctgt gacccagtga ccgggcagtg tgtatgcaag gagcaagtgc agggggaacg
     1441 ctgtgacctg tgcaagccgg gatttacagg actcacctat gccaacccgc agggctgcca
     1501 ccgctgtgac tgcagcgtcc tgggtgcccg gcgggacatg ccgtgtgatg aggagagtgg
     1561 acgctgcctg tgtctgcccc acgtggtggg ccccaaatgt gaccagtgcg ctcgctacca
     1621 ctggaagctg gccagcggcc ggggctgcga gccatgtgcc tgcgacccgc acaactccct
     1681 cagcccccag tgcaaccagt tcacaggaca gtgcccctgt caggaaggtt ttggtggcct
     1741 gacctgcaac gctgcagcca tccgccagtg tcctgacaag acctacggag atgcagctat
     1801 gggatgccga gcctgtgact gtgacttccg gggaacggag ggaccaggct gcgataaggc
     1861 ctcgggccgc tgtctctgcc gccctggttc gaccgggcca cgctgcgacc agtgccagcg
     1921 aggctactgt gaccgctacc cggtgtgtgt ggcctgccac ccctgcttcc agacctatga
     1981 caccggcctc cgggagcggg ccctccgcct cagcagcctc cgaaatgcca ccaccagcct
     2041 gtggcctggg ccgggcctgg aggaccgtgg cctggcgtcc cggatgctgg acacaaagaa
     2101 caagctggag cagatccaag ccatcctcgg cggcgcctcg gtcacggagc aggaggtggc
     2161 ccaggtggcc aatggcatcg tctccatcag gcagactctc cagggcctgc aggtggatct
     2221 gcccctagag gaggaaatct tgtccctccc gggagacctg gagaatctgg acagaagctt
     2281 caatcgcctc ctcgttatgt atcagagcaa gagggagcag tttgaaaaaa taagcagtgc
     2341 cgatccttca ggagccttcc agatgctgac cgcggcccac cagcggtcat cccaggctgc
     2401 tcagcaggtc gcggatagct cccgccggct gctgcggctc agggacagcc ggagagaggc
     2461 ggagagtctg gagcagcagc tgggaggagc aggaggggcc ggcggccccc agctcgcggc
     2521 cctgaggctg cagatggctt ccttgcctga tctgacaccc gccgccaaca agctctgtgg
     2581 gggacccagg gagatggctt gcaccccggg agcgtgccct ggggagctgt gtccccgaga
     2641 caacggcacg gcctgtggct cccactgcag gggtgctctc cccagcgcag gtggggcctt
     2701 ccggacggca gggcaggtgg ccgagcagct gcggggcttc aaggcccagc tccagcagac
     2761 caggcagatg atcagggcag ccgaggaagc caccttgcag gtgcagtcag atgctcagag
     2821 cctggagatg caggtgagca ccagccgctc ccagatggag gaagacgtca cacgcacgcg
     2881 gctcctcatc cagcaggtcc gagacttcct ctcagaccct gacactgacg tagccaccat
     2941 ccaggaggtc agtgaggccg tgctggccct gtggctgccc acagactctg ccacagtcct
     3001 gcggaagatg aatgagatcc aggccatcgc agccaggctc cccaacgtgg acctggtgct
     3061 ttctcagacc aagcaggaca tcgctcgggc tcgcaggctc caggctgagg ctgagcaggc
     3121 caggagccga gcccacacag tggagggcca ggtggaggat gtgctgggga acctgcgaca
     3181 gggcacgctg gcactgcagg aggcccagga caccatgcaa ggcacccgcc gctcccttca
     3241 gcgtatccaa gacagggttg ctgaggttca gcaggtgctg gggccagcgg aaagactggc
     3301 gaccagcctg atggagcagc tgggtggctt ccgagcgcgg atggaggagc tcggccaccg
     3361 ggccaggcag cagcgggcac aggccgccca ggcccagaat ctggcagagg aggccagcaa
     3421 gcaggcactg agtgcccagg agggatttga gagaataaag caaaagtatg ctgagttgaa
     3481 ggaccggctg ggtcagagcc ccacgctggg agagcagggc agccggatct taagcatcaa
     3541 gatggaggcg gaggaactgt ttggggaaac catggcgatg atggacaaga tgaaagacat
     3601 ggagtcggag ctgcttcggg gcagccaggc catcatgctt cgctcggcgg acctgacggg
     3661 gctggagaag cacgtggagc agatccggaa ccacatcaac gggcgcgtgc tctactacgc
     3721 cacctgcaag tgatgcgcca gcgtccagcc tgcggccctg ctcatctgcc ctctttgctc
     3781 ctgggggcca ggctggcttg gaataccgtc cagctgcagg aaaattttat gcaacctaaa
     3841 gcacagcctg gaccaccctg gtgtgcagtt gttagggtta ctctgggctg cagctgagcc
     3901 tgggctgatg ggacaactac cgctgaggga cagatgtggt ggaggcaggc cacatcattg
     3961 taaccaggag ctctcaagag gagggtgctt ggctgggcgg tgtccttgcc cttcattctc
     4021 cgttgaggct gaatcctgga ccaacacaga aacataacta aaaatgatgt acaagtgaaa
     4081 agcccaataa aaatctatag aaaggagcct ggagtttcaa agagg
//
LOCUS       XM_032608231            3912 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus laminin subunit beta 3 (LAMB3),
            transcript variant X2, mRNA.
ACCESSION   XM_032608231
VERSION     XM_032608231.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3912
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3912
                     /gene="LAMB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741523"
     CDS             213..3539
                     /gene="LAMB3"
                     /codon_start=1
                     /product="laminin subunit beta-3 isoform X2"
                     /protein_id="XP_032464122.1"
                     /db_xref="GeneID:116741523"
                     /translation="MRLLLLLYFVLPSILCAQQACSRGACYPPVGDLLIGRTRFLRAS
                     STCGLAKPETYCTQYGEWQMKCCKCDSRLPHNYNSHRVENVVSSSGPMRWWQSQNDVS
                     PVSLQLDLDRKFQLQDIMMDFKVQLNLMDLASGIPATQSQKIQELGAITNLRVNFTRL
                     ASVPQRGYHPPSAYYAVSQLRLQGSCFCHGHADHCAPNSRAPASPSTTVQVHGVCVCQ
                     HNTAGPNCEHCAPFYNNKPWKPADDQDPHECQRCDCNGHSETCHFDPAVFTASQGAHG
                     GVCDNCQHHTEGKNCERCQLHYFRNRRPDAPIQETCIPCECDPDGAVPGAPCDPVTGQ
                     CVCKEQVQGERCDLCKPGFTGLTYANPQGCHRCDCSVLGARRDMPCDEESGRCLCLPH
                     VVGPKCDQCARYHWKLASGRGCEPCACDPHNSLSPQCNQFTGQCPCQEGFGGLTCNAA
                     AIRQCPDKTYGDAAMGCRACDCDFRGTEGPGCDKASGRCLCRPGSTGPRCDQCQRGYC
                     DRYPVCVACHPCFQTYDTGLRERALRLSSLRNATTSLWPGPGLEDRGLASRMLDTKNK
                     LEQIQAILGGASVTEQEVAQVANGIVSIRQTLQGLQVDLPLEEEILSLPGDLENLDRS
                     FNRLLVMYQSKREQFEKISSADPSGAFQMLTAAHQRSSQAAQQVADSSRRLLRLRDSR
                     REAESLEQQLGGAGGAGGPQLAALRLQMASLPDLTPAANKLCGGPREMACTPGACPGE
                     LCPRDNGTACGSHCRGALPSAGGAFRTAGQVAEQLRGFKAQLQQTRQMIRAAEEATLQ
                     VQSDAQSLEMQVSTSRSQMEEDVTRTRLLIQQVRDFLSDPDTDVATIQEVSEAVLALW
                     LPTDSATVLRKMNEIQAIAARLPNVDLVLSQTKQDIARARRLQAEAEQARSRAHTVEG
                     QVEDVLGNLRQGTLALQEAQDTMQGTRRSLQRIQDRVAEVQQVLGPAERLATSLMEQL
                     GGFRARMEELGHRARQQRAQAAQAQNLAEEASKQALSAQEGFERIKQKYAELKDRLGQ
                     SPTLGEQGSRILSIKMEAEELFGETMAMMDKMKDMESELLRGSQAIMLRSADLTGLEK
                     HVEQIRNHINGRVLYYATCK"
     misc_feature    270..764
                     /gene="LAMB3"
                     /note="Laminin N-terminal (Domain VI); Region: Laminin_N;
                     cl02806"
                     /db_xref="CDD:470680"
     misc_feature    765..938
                     /gene="LAMB3"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; Region: EGF_Lam;
                     cd00055"
                     /db_xref="CDD:238012"
     misc_feature    order(768..770,774..776,834..836,855..857,861..863,
                     888..890)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    966..1118
                     /gene="LAMB3"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(966..968,972..974,993..995,1047..1049,1056..1058,
                     1083..1085)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1155..1304
                     /gene="LAMB3"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(1155..1157,1161..1163,1194..1196,1215..1217,
                     1221..1223,1248..1250)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1311..1454
                     /gene="LAMB3"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(1311..1313,1317..1319,1350..1352,1371..1373,
                     1377..1379,1404..1406)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1461..1622
                     /gene="LAMB3"
                     /note="Laminin EGF domain; Region: Laminin_EGF; pfam00053"
                     /db_xref="CDD:395007"
     misc_feature    order(1461..1463,1467..1469,1497..1499,1518..1520,
                     1524..1526,1551..1553)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    1620..1733
                     /gene="LAMB3"
                     /note="Laminin-type epidermal growth factor-like domai;
                     Region: EGF_Lam; smart00180"
                     /db_xref="CDD:214543"
     misc_feature    order(1620..1622,1626..1628,1656..1658,1677..1679,
                     1683..1685,1710..1712)
                     /gene="LAMB3"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     misc_feature    <2538..>3365
                     /gene="LAMB3"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    3324..3536
                     /gene="LAMB3"
                     /note="C-terminal coiled-coil domain found in the laminin
                     subunit beta (LAMB) family; Region: cc_LAMB_C; cl40438"
                     /db_xref="CDD:424069"
     misc_feature    order(3330..3335,3342..3347,3351..3356,3363..3365,
                     3384..3389,3393..3398,3405..3407,3414..3419,3426..3431,
                     3435..3443,3447..3452,3459..3461,3468..3473,3477..3485,
                     3489..3494,3498..3506,3510..3518,3522..3533)
                     /gene="LAMB3"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411969"
ORIGIN      
        1 cgtgccagct gccagattcc tgagtcccgc cctgcagtgg gtgacgccca gccaggacgt
       61 ctccagaggt gaggccgttg tttaaaacct aggagccagg agaggggact cccacattca
      121 aggcgtgctc tcagagaggt gatctggaga aagaaccgcg gcagcacgga gtggggtgag
      181 gtcctgggtg gggatcatcc cattggctga agatgaggct gctccttctc ctgtattttg
      241 tcttgcccag catcctgtgt gcccagcaag cctgctcccg tggggcctgc tatccacccg
      301 ttggggacct gctcattggg aggacccggt ttctccgagc ttcatctacc tgtggcctgg
      361 ccaagcctga gacctactgc acccagtatg gagagtggca gatgaaatgc tgcaagtgtg
      421 actccaggtt gcctcacaat tacaacagtc accgagtgga gaatgtggtc tcatcctcgg
      481 gccccatgcg ctggtggcag tcacagaatg atgtgagccc tgtctctctg cagctggacc
      541 tagacaggaa attccagctt caagacatca tgatggattt taaggtccaa cttaacctta
      601 tggatttagc ctctgggatc ccagcaactc aaagtcaaaa aattcaagag ctgggggcga
      661 tcacaaactt gagagtcaac ttcaccaggc tggcctctgt gccccagagg ggctatcacc
      721 ctcccagcgc ctactatgct gtttcccagc tgcgtctgca ggggagctgt ttctgtcacg
      781 gccatgctga ccactgtgcc cccaattcca gagcccctgc cagcccctcc accactgtgc
      841 aggtccatgg ggtctgcgtc tgccagcaca acaccgccgg ccccaactgt gaacactgtg
      901 cacccttcta caacaacaag ccctggaaac ccgcagatga ccaggacccc catgaatgcc
      961 aaaggtgtga ctgcaacgga cactcagaga catgtcattt cgacccagcc gtgtttaccg
     1021 ccagccaggg ggcacatgga ggtgtgtgtg acaactgcca acaccacact gagggcaaga
     1081 actgtgagcg gtgtcagctg cactatttcc ggaaccggcg tcctgatgct cccattcagg
     1141 agacctgcat cccctgcgag tgtgatccgg atggggcagt gccaggagcg ccctgtgacc
     1201 cagtgaccgg gcagtgtgta tgcaaggagc aagtgcaggg ggaacgctgt gacctgtgca
     1261 agccgggatt tacaggactc acctatgcca acccgcaggg ctgccaccgc tgtgactgca
     1321 gcgtcctggg tgcccggcgg gacatgccgt gtgatgagga gagtggacgc tgcctgtgtc
     1381 tgccccacgt ggtgggcccc aaatgtgacc agtgcgctcg ctaccactgg aagctggcca
     1441 gcggccgggg ctgcgagcca tgtgcctgcg acccgcacaa ctccctcagc ccccagtgca
     1501 accagttcac aggacagtgc ccctgtcagg aaggttttgg tggcctgacc tgcaacgctg
     1561 cagccatccg ccagtgtcct gacaagacct acggagatgc agctatggga tgccgagcct
     1621 gtgactgtga cttccgggga acggagggac caggctgcga taaggcctcg ggccgctgtc
     1681 tctgccgccc tggttcgacc gggccacgct gcgaccagtg ccagcgaggc tactgtgacc
     1741 gctacccggt gtgtgtggcc tgccacccct gcttccagac ctatgacacc ggcctccggg
     1801 agcgggccct ccgcctcagc agcctccgaa atgccaccac cagcctgtgg cctgggccgg
     1861 gcctggagga ccgtggcctg gcgtcccgga tgctggacac aaagaacaag ctggagcaga
     1921 tccaagccat cctcggcggc gcctcggtca cggagcagga ggtggcccag gtggccaatg
     1981 gcatcgtctc catcaggcag actctccagg gcctgcaggt ggatctgccc ctagaggagg
     2041 aaatcttgtc cctcccggga gacctggaga atctggacag aagcttcaat cgcctcctcg
     2101 ttatgtatca gagcaagagg gagcagtttg aaaaaataag cagtgccgat ccttcaggag
     2161 ccttccagat gctgaccgcg gcccaccagc ggtcatccca ggctgctcag caggtcgcgg
     2221 atagctcccg ccggctgctg cggctcaggg acagccggag agaggcggag agtctggagc
     2281 agcagctggg aggagcagga ggggccggcg gcccccagct cgcggccctg aggctgcaga
     2341 tggcttcctt gcctgatctg acacccgccg ccaacaagct ctgtggggga cccagggaga
     2401 tggcttgcac cccgggagcg tgccctgggg agctgtgtcc ccgagacaac ggcacggcct
     2461 gtggctccca ctgcaggggt gctctcccca gcgcaggtgg ggccttccgg acggcagggc
     2521 aggtggccga gcagctgcgg ggcttcaagg cccagctcca gcagaccagg cagatgatca
     2581 gggcagccga ggaagccacc ttgcaggtgc agtcagatgc tcagagcctg gagatgcagg
     2641 tgagcaccag ccgctcccag atggaggaag acgtcacacg cacgcggctc ctcatccagc
     2701 aggtccgaga cttcctctca gaccctgaca ctgacgtagc caccatccag gaggtcagtg
     2761 aggccgtgct ggccctgtgg ctgcccacag actctgccac agtcctgcgg aagatgaatg
     2821 agatccaggc catcgcagcc aggctcccca acgtggacct ggtgctttct cagaccaagc
     2881 aggacatcgc tcgggctcgc aggctccagg ctgaggctga gcaggccagg agccgagccc
     2941 acacagtgga gggccaggtg gaggatgtgc tggggaacct gcgacagggc acgctggcac
     3001 tgcaggaggc ccaggacacc atgcaaggca cccgccgctc ccttcagcgt atccaagaca
     3061 gggttgctga ggttcagcag gtgctggggc cagcggaaag actggcgacc agcctgatgg
     3121 agcagctggg tggcttccga gcgcggatgg aggagctcgg ccaccgggcc aggcagcagc
     3181 gggcacaggc cgcccaggcc cagaatctgg cagaggaggc cagcaagcag gcactgagtg
     3241 cccaggaggg atttgagaga ataaagcaaa agtatgctga gttgaaggac cggctgggtc
     3301 agagccccac gctgggagag cagggcagcc ggatcttaag catcaagatg gaggcggagg
     3361 aactgtttgg ggaaaccatg gcgatgatgg acaagatgaa agacatggag tcggagctgc
     3421 ttcggggcag ccaggccatc atgcttcgct cggcggacct gacggggctg gagaagcacg
     3481 tggagcagat ccggaaccac atcaacgggc gcgtgctcta ctacgccacc tgcaagtgat
     3541 gcgccagcgt ccagcctgcg gccctgctca tctgccctct ttgctcctgg gggccaggct
     3601 ggcttggaat accgtccagc tgcaggaaaa ttttatgcaa cctaaagcac agcctggacc
     3661 accctggtgt gcagttgtta gggttactct gggctgcagc tgagcctggg ctgatgggac
     3721 aactaccgct gagggacaga tgtggtggag gcaggccaca tcattgtaac caggagctct
     3781 caagaggagg gtgcttggct gggcggtgtc cttgcccttc attctccgtt gaggctgaat
     3841 cctggaccaa cacagaaaca taactaaaaa tgatgtacaa gtgaaaagcc caataaaaat
     3901 ctatagaaag ga
//
LOCUS       XM_032608240            1480 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UTP11 small subunit processome component
            (UTP11), mRNA.
ACCESSION   XM_032608240
VERSION     XM_032608240.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1480
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1480
                     /gene="UTP11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741538"
     CDS             86..847
                     /gene="UTP11"
                     /codon_start=1
                     /product="probable U3 small nucleolar RNA-associated
                     protein 11"
                     /protein_id="XP_032464131.1"
                     /db_xref="GeneID:116741538"
                     /translation="MAAAFRKAAKSRQREHRERSQPSFRKHLGLLEKKKDYKLRADDY
                     RKKQKYLRALRKKALEKNPDEFYYKMTRVKLQDGVHVIKETKEEVTPEQLKLMRTQDV
                     KYIEMKRVAEAKKIERLKSELHLLDFQGKQQKKHVFFFDTKKEVEQFDIATHLRTAPE
                     LVDRVFNRPTIETLQKEKVKGVNNQTRLKQIAKERQKQYNCLTQRIEREKKLFVIAQK
                     IQTRKDLLDKTQKVKVKKETVNSPAIYKFESRRKR"
     misc_feature    122..844
                     /gene="UTP11"
                     /note="Utp11 protein; Region: Utp11; pfam03998"
                     /db_xref="CDD:461122"
ORIGIN      
        1 ggcttggcct atatccggta gggtcagtgg acgaggcggt gcggacctgg cgttgtctac
       61 tgagcttttc caggactgag cagacatggc ggcggctttt cggaaagctg ctaagtcgcg
      121 gcagcgggaa cacagagagc gaagccagcc cagctttcga aaacatctgg gcctgctgga
      181 gaaaaagaaa gattacaaac ttcgtgcaga tgactaccgg aaaaagcaaa aataccttag
      241 agctctccgg aagaaggctc ttgaaaaaaa tccagatgaa ttctactata aaatgactcg
      301 ggttaaactc caggatggag ttcatgttat taaggagact aaggaagaag taactccaga
      361 gcagctgaaa ctaatgagaa ctcaggatgt caaatatata gaaatgaaaa gggttgcaga
      421 agctaagaaa attgaaagac taaaatcaga gctccatctg ctggatttcc aggggaagca
      481 acagaagaag catgtgtttt tttttgacac caaaaaggaa gtcgaacagt ttgatattgc
      541 aactcacctg cgaacagccc cagaactagt cgacagagtc tttaacagac ctacgataga
      601 gaccttgcag aaggagaaag tgaaaggagt taacaatcag actcgactta agcaaatagc
      661 gaaagagagg caaaagcagt ataactgcct gacacagcgg attgagcgcg agaagaaatt
      721 gtttgttatt gcacagaaaa ttcaaactcg caaagatctt ctggataaaa ctcagaaggt
      781 gaaggtgaag aaagaaacag tcaactcccc agctatttac aaatttgaga gtcgtcgaaa
      841 acgttgaagt gttaaagata agcctgtcat tccacgtgga agagtttatg tttttttttt
      901 ccagtaactt cagattccac tcttctaagt gatttggttt tcctgtttat aaccgtaatt
      961 tattatagat ctgacatttg acgtgaacag tgttaaagcc ccttccccct gtctaaattg
     1021 tttgtgggtt gttgaattgt tgaaatcagt cttttttttt ggccgctgtg cgaaacctgc
     1081 aggatccccg gtccccgacc agggatcaaa cccaggccca aggcaatgaa agcgccaggt
     1141 cccagtcact ggaccaccaa ggaattccct gaaatcagtc ttatttttat atactttcat
     1201 gttttttcat tataaaagtt acataatctt ttatatagca aatttggaaa acacgtgagt
     1261 tcatctctaa tcccaatact tattcaagaa cgacagatag ctgttgcata cttaactatg
     1321 ctaggaggtt agggaaatgg aggtgaacga ctatcaagag cattctggtt gagttcctcc
     1381 attttgtaga ggttggcact ggtttttgtg ttttgtagtt gtaattaaac acctttatgg
     1441 cctacttttt tcacttacta ttaaatcatt agctcttttc
//
LOCUS       XM_032608250            1245 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus involucrin (IVL), mRNA.
ACCESSION   XM_032608250
VERSION     XM_032608250.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1245
                     /gene="IVL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 42% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116741544"
     CDS             7..1245
                     /gene="IVL"
                     /codon_start=1
                     /product="involucrin"
                     /protein_id="XP_032464141.1"
                     /db_xref="GeneID:116741544"
                     /translation="MSQQRTLPVTLPPAPSKESLKPVSPPTNIQQEQAKQPTPLPAPF
                     QKVSSEFPGKDPMELGKKHTTPVKEVPKKECEPRQQEPQQQQQQQQQQQESQKPGKPV
                     DQQQQQKESQEPGKPVDQQQQQKESQEPGKPVDQQQQQKESQEPGKPVDQQQQQKESQ
                     KPGKHVQQQQQQKESQEPGKHVEQQQQQKESQEPGRPVDQQQQQKESQKPGKPVDQQQ
                     QQKESQKPGKPVDQQQQQQKESQEPGKPVDQQQQQKESQEPGKPVDQQQQQKESQEPG
                     KHVQQQQQQKESQEPGKHVEQQQQQKESQEPGKPQQQKESQEPGKPVDQQQQQKESQE
                     PGKHVQQQQQQKESQQPGKPVDQQQQQKESQEPGKHVQQLKQEKKVLGQRLDQELAKK
                     DQQLEKKGEQQLKQQNGLLK"
     misc_feature    7..213
                     /gene="IVL"
                     /note="Involucrin of squamous epithelia N-terminus;
                     Region: Involucrin_N; pfam10583"
                     /db_xref="CDD:431372"
ORIGIN      
        1 tccaagatgt cccagcaacg tactctgcca gtgaccttgc cccctgcccc cagtaaggag
       61 tccctcaagc ctgtttctcc tcccaccaac atccagcagg agcaagcgaa gcagccaact
      121 ccactgcctg ccccattcca gaaggtatcc tcggagttcc cagggaagga tcccatggag
      181 ctggggaaga aacacaccac tcctgtgaag gaggtaccca agaaagagtg tgagccacgg
      241 caacaggagc cacagcagca gcaacagcag cagcagcagc agcaagagtc acagaagcca
      301 ggaaagcctg tggaccagca gcagcagcag aaagagtcac aggagccagg aaagcctgtg
      361 gaccagcagc agcagcagaa agagtcacag gagccaggaa agcctgtgga ccagcaacag
      421 cagcagaaag agtcacagga gccaggaaag cctgtggacc agcagcagca gcagaaagag
      481 tcacagaagc caggaaagca tgtgcaacag cagcagcagc agaaagagtc acaggagcca
      541 ggaaagcatg tagaacagca gcagcagcag aaagagtcac aggagccagg aaggcctgtg
      601 gaccagcagc agcagcagaa agagtcacag aagccaggaa agcctgtgga ccagcagcag
      661 cagcagaaag agtcacagaa gccaggaaag cctgtggacc agcagcagca gcagcagaaa
      721 gagtcacagg agccaggaaa gcctgtggac cagcagcagc agcagaaaga gtcacaggag
      781 ccaggaaagc ctgtggacca gcagcagcag cagaaagagt cacaggagcc aggaaagcat
      841 gtgcaacagc agcagcagca gaaagagtca caggagccag gaaagcatgt agaacagcag
      901 cagcagcaga aagagtcaca ggagccaggg aagcctcagc agcagaaaga gtcacaggag
      961 ccaggaaagc ctgtggacca gcagcagcag cagaaagagt cacaggagcc aggaaagcat
     1021 gtgcaacagc agcagcagca gaaagagtca cagcagccag gaaagcctgt ggaccagcag
     1081 cagcagcaga aagagtcaca ggagccagga aagcatgtgc aacagctgaa acaggagaag
     1141 aaggtcttgg gccagcggct ggatcaagag ctagcaaaga aagatcagca actggaaaag
     1201 aaaggggagc agcagctgaa gcagcagaac gggttgctga agtag
//
LOCUS       XM_032608264            1736 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus crystallin zeta (CRYZ), transcript
            variant X1, mRNA.
ACCESSION   XM_032608264
VERSION     XM_032608264.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1736
                     /gene="CRYZ"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 5 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741549"
     CDS             108..1100
                     /gene="CRYZ"
                     /codon_start=1
                     /product="quinone oxidoreductase"
                     /protein_id="XP_032464155.1"
                     /db_xref="GeneID:116741549"
                     /translation="MATGQKLMRAIRVFEFGGPEVLKLQSNVAIPIPKDHQVLIKVQA
                     CGVNPVDTYIRSGTYSRKPLLPYTPGLDVAGIIEAVGESVSAFKKGDRVFTTSTISGG
                     YAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAFRALLHSARVKAGETVLVHGASGG
                     VGIAACQIARAYGLKVLGTAGTEEGQKIVLQNGAHEVFNHKEANYIDKIKKSVGEKGV
                     DVIIEMLANVNLSNDLNLLSHGGRVIVVGSRGPIEINPRDTMAKESSIIGVALHSSTK
                     EEFQQFAAALQAGMETGWLRPVIGPQYPLEKVAQAHEDIIHSSGATGKMILLLK"
     misc_feature    129..1094
                     /gene="CRYZ"
                     /note="Zeta-crystallin with NADP-dependent quinone
                     reductase activity (QOR); Region: zeta_crystallin;
                     cd08253"
                     /db_xref="CDD:176215"
     misc_feature    order(252..254,264..266,498..500,510..512,570..590,
                     645..650,705..710,777..782,792..794,843..848,852..854,
                     912..920,1050..1052,1065..1070)
                     /gene="CRYZ"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:176215"
ORIGIN      
        1 agcctgaaag cgccgcggat gacgcggccc gtgtcttttt tccgtagaac ctgagggatc
       61 cctcgcagat tttgatttcc cactctagaa ccggtatcta ggtcaccatg gcgactggac
      121 agaagttgat gagagctatt agagtttttg aatttggtgg accagaagtg ctgaaactcc
      181 agtcgaatgt tgccatacca attccgaaag accatcaggt tctaattaaa gtccaagcat
      241 gtggtgtaaa cccggtggac acatatattc gctctggtac ttacagtaga aaaccacttc
      301 taccctatac tcctggctta gatgtggctg gaataataga agctgtcgga gagagtgtat
      361 ctgctttcaa gaaaggtgac agggttttca ctacaagcac aatctctggg ggctacgcag
      421 aatatgctct ggcagccgat cacactgttt acacactgcc agaaaaactg gactttaaac
      481 agggagctgc catcgggatc ccgtatttta ctgcttttcg agctctgctt cacagtgccc
      541 gtgtgaaagc tggagaaact gttctggttc atggggctag tggaggggtt ggaatagcag
      601 catgccaaat tgctagagct tatggcttaa aggttttggg cacagctggt actgaggaag
      661 gacaaaagat tgttttgcaa aatggagccc acgaagtgtt taatcacaaa gaagctaatt
      721 acattgataa aattaagaaa tctgttggtg aaaaaggagt tgatgtgatt attgaaatgc
      781 tagctaatgt aaatcttagc aacgatttga atcttttgtc acatggagga cgagtaatag
      841 ttgttggcag caggggtcct attgaaataa acccacggga caccatggca aaggaatcta
      901 gcataatagg agttgctctc cattcatcca ccaaggagga atttcagcag tttgcagcag
      961 cccttcaagc tggaatggaa actggttggt tgagaccagt aataggtccc cagtatccat
     1021 tggagaaggt ggcccaggct catgaagata tcattcatag cagtggggct actggaaaaa
     1081 tgattcttct cttaaaatga ttaatccttc cacagatttc ctgcataatt aaaggtttct
     1141 tacctcagtt ttacgtacac tacatttgct ttaattagca ttcatttgat tcagtgagtt
     1201 tcttatatta aaaaaaagat ttatctttag cgatcataga cattggagtg caattgattt
     1261 tatagctggc aatattcttt atgccttctg cctctcgtca aggattcatc atagtaggaa
     1321 atagaatatt agtggtcact tggcattgga gggcattaca gaaattccta actgatactt
     1381 gatcattgat tccataactt tgactaaaac atgctaattc aaagtaagac ttcttgattt
     1441 ccaagcctac ttctttataa gaaccttata gggacttccc tgatggtcca gtggttgaga
     1501 cttcgcctac cagtgccggt ggtgtgagtt tgttccctgg ttgggaagct aggatcccac
     1561 atgccttggg gccaaaaaaa ccaaaacata aaacagaaac aatattgtaa aaaattcaat
     1621 aaaaacttta aaaaaaaaaa aaaaagaact ttataaaggt tctttagtct ctgattagcc
     1681 cagaactata ttggactctg aagattttct ggactaaaca agacaccttt tccaaa
//
LOCUS       XM_032608273            1725 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus crystallin zeta (CRYZ), transcript
            variant X2, mRNA.
ACCESSION   XM_032608273
VERSION     XM_032608273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1725
                     /gene="CRYZ"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741549"
     CDS             97..1089
                     /gene="CRYZ"
                     /codon_start=1
                     /product="quinone oxidoreductase"
                     /protein_id="XP_032464164.1"
                     /db_xref="GeneID:116741549"
                     /translation="MATGQKLMRAIRVFEFGGPEVLKLQSNVAIPIPKDHQVLIKVQA
                     CGVNPVDTYIRSGTYSRKPLLPYTPGLDVAGIIEAVGESVSAFKKGDRVFTTSTISGG
                     YAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAFRALLHSARVKAGETVLVHGASGG
                     VGIAACQIARAYGLKVLGTAGTEEGQKIVLQNGAHEVFNHKEANYIDKIKKSVGEKGV
                     DVIIEMLANVNLSNDLNLLSHGGRVIVVGSRGPIEINPRDTMAKESSIIGVALHSSTK
                     EEFQQFAAALQAGMETGWLRPVIGPQYPLEKVAQAHEDIIHSSGATGKMILLLK"
     misc_feature    118..1083
                     /gene="CRYZ"
                     /note="Zeta-crystallin with NADP-dependent quinone
                     reductase activity (QOR); Region: zeta_crystallin;
                     cd08253"
                     /db_xref="CDD:176215"
     misc_feature    order(241..243,253..255,487..489,499..501,559..579,
                     634..639,694..699,766..771,781..783,832..837,841..843,
                     901..909,1039..1041,1054..1059)
                     /gene="CRYZ"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:176215"
ORIGIN      
        1 ctcgcagatt ttgatttccc actctagaac cggctgaagg atttgtaaga tgaaaggtcc
       61 tcaaacatga aatgagatca gtgtatctag gtcaccatgg cgactggaca gaagttgatg
      121 agagctatta gagtttttga atttggtgga ccagaagtgc tgaaactcca gtcgaatgtt
      181 gccataccaa ttccgaaaga ccatcaggtt ctaattaaag tccaagcatg tggtgtaaac
      241 ccggtggaca catatattcg ctctggtact tacagtagaa aaccacttct accctatact
      301 cctggcttag atgtggctgg aataatagaa gctgtcggag agagtgtatc tgctttcaag
      361 aaaggtgaca gggttttcac tacaagcaca atctctgggg gctacgcaga atatgctctg
      421 gcagccgatc acactgttta cacactgcca gaaaaactgg actttaaaca gggagctgcc
      481 atcgggatcc cgtattttac tgcttttcga gctctgcttc acagtgcccg tgtgaaagct
      541 ggagaaactg ttctggttca tggggctagt ggaggggttg gaatagcagc atgccaaatt
      601 gctagagctt atggcttaaa ggttttgggc acagctggta ctgaggaagg acaaaagatt
      661 gttttgcaaa atggagccca cgaagtgttt aatcacaaag aagctaatta cattgataaa
      721 attaagaaat ctgttggtga aaaaggagtt gatgtgatta ttgaaatgct agctaatgta
      781 aatcttagca acgatttgaa tcttttgtca catggaggac gagtaatagt tgttggcagc
      841 aggggtccta ttgaaataaa cccacgggac accatggcaa aggaatctag cataatagga
      901 gttgctctcc attcatccac caaggaggaa tttcagcagt ttgcagcagc ccttcaagct
      961 ggaatggaaa ctggttggtt gagaccagta ataggtcccc agtatccatt ggagaaggtg
     1021 gcccaggctc atgaagatat cattcatagc agtggggcta ctggaaaaat gattcttctc
     1081 ttaaaatgat taatccttcc acagatttcc tgcataatta aaggtttctt acctcagttt
     1141 tacgtacact acatttgctt taattagcat tcatttgatt cagtgagttt cttatattaa
     1201 aaaaaagatt tatctttagc gatcatagac attggagtgc aattgatttt atagctggca
     1261 atattcttta tgccttctgc ctctcgtcaa ggattcatca tagtaggaaa tagaatatta
     1321 gtggtcactt ggcattggag ggcattacag aaattcctaa ctgatacttg atcattgatt
     1381 ccataacttt gactaaaaca tgctaattca aagtaagact tcttgatttc caagcctact
     1441 tctttataag aaccttatag ggacttccct gatggtccag tggttgagac ttcgcctacc
     1501 agtgccggtg gtgtgagttt gttccctggt tgggaagcta ggatcccaca tgccttgggg
     1561 ccaaaaaaac caaaacataa aacagaaaca atattgtaaa aaattcaata aaaactttaa
     1621 aaaaaaaaaa aaaagaactt tataaaggtt ctttagtctc tgattagccc agaactatat
     1681 tggactctga agattttctg gactaaacaa gacacctttt ccaaa
//
LOCUS       XM_032608286            4587 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD2 molecule (CD2), mRNA.
ACCESSION   XM_032608286
VERSION     XM_032608286.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4587
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4587
                     /gene="CD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741556"
     CDS             65..1087
                     /gene="CD2"
                     /codon_start=1
                     /product="T-cell surface antigen CD2"
                     /protein_id="XP_032464177.1"
                     /db_xref="GeneID:116741556"
                     /translation="MSLTCKILTSFLLIFAVSTKGEVSENTEVIWGCLDHDINLDIPG
                     FQMNDRVADTRWDKNKIKIAQLKQDKPPYQITDTYVMLKNGTLKIKALKRNDSDVYTV
                     SVYDLNGKNILEKAFDLKIQEMVSKPVISWSCTNRTLICEVAKGSDPKLKLFVNKTRV
                     KESHQKAITHKWNGKWTSSFNCVASNNVSAQTSTVTVSCSEKGLDIYLIIGICGGGTV
                     FLVFLALLVFYISKRKKQRSRRNDEEMEIRGKRVTPEERGWKPHQIPGSTPQNPAMSQ
                     TPPIPGHRSQAPAHRPRPPGPRVQHQQKKRPPPTLGKQVHLQKGPPLPKPRVQTKPPC
                     EVEENS"
     misc_feature    146..430
                     /gene="CD2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    176..190
                     /gene="CD2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    212..235
                     /gene="CD2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    317..331
                     /gene="CD2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    359..376
                     /gene="CD2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    404..415
                     /gene="CD2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    452..667
                     /gene="CD2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    <824..1063
                     /gene="CD2"
                     /note="Proline-rich protein; Region: Pro-rich; pfam15240"
                     /db_xref="CDD:464580"
ORIGIN      
        1 ggtgttattt cagttccttt ttaaagaaga gctcagaatc acaagaagga aactaacccc
       61 aaagatgagc ctcacgtgta aaatcttaac cagcttcctt ctgattttcg ctgtttccac
      121 caaaggtgag gtctctgaaa atactgaagt catctggggt tgcctggatc atgacatcaa
      181 cctggacatt cctggttttc aaatgaatga tagggtagca gatacacgat gggacaaaaa
      241 caaaatcaag attgcacaat taaaacaaga caagccacct taccagataa cggacacgta
      301 tgtgatgtta aaaaatggaa ctctgaaaat taaagctctg aagagaaatg atagcgacgt
      361 ctacacagta tctgtatatg atttgaatgg aaaaaacata ttggagaaag catttgattt
      421 gaagattcaa gagatggtct caaaacctgt aatttcctgg agttgtacca acagaaccct
      481 gatctgcgag gtagcaaaag gaagtgaccc taaattaaaa ctgtttgtaa ataagacccg
      541 tgtcaaagaa agtcatcaga aggccatcac acacaagtgg aacggcaaat ggacttcatc
      601 attcaactgc gtggcgagta acaatgtcag tgcccaaacg agcacggtga ccgtcagctg
      661 ttcagagaaa ggtctggata tctatctcat catcggcatt tgcggaggag gcaccgtctt
      721 ccttgtcttc ttggcactac tcgttttcta cattagcaag aggaaaaaac agaggagtag
      781 gagaaatgat gaagagatgg agataagagg gaagagagtg acccctgagg aaaggggctg
      841 gaagccccac caaattccag gctcaactcc tcaaaatcca gccatgtccc aaactcctcc
      901 aatacctggt catcgttccc aagcacccgc tcatcgtccc aggcctcctg gcccccgtgt
      961 ccagcaccag cagaagaaga ggcctcctcc taccctgggc aaacaagttc acctgcaaaa
     1021 aggccctccc ctccccaagc ctcgagttca aacgaaacct ccctgtgagg tcgaagaaaa
     1081 ctcgtaactg tctcctgacg cagctgtcct cttcctctaa ttaaaagaga ttaaaaaccg
     1141 tcctttccca taaaaggcac tgtggaattt ctccactcca ggtgtgcatg cccacactcc
     1201 catcaagtgt gctctacaag cagaccatga tctcctcccc agcccaggag ccacggccat
     1261 gtctgtacct tccaactcag ccatgtggtc tgacgtctgg agtctctggc ctcctcacag
     1321 atctccacct cagcgggaag ggaaaaacaa taagagtgca cacattagga tcatgggtga
     1381 tggagtgcag aatcctagag ctctcgtacc ctccctctca gagcccgtgt cagatgtcaa
     1441 gcagtcgctg tggccatgtc tcgctacaag cagcttcctg cctgagagac ccttggtttt
     1501 cttaggtgga cacttgctca ccatatcgcg agtacaagtg aaacaaatgc cttgatttga
     1561 ccccagcatc tactcgctgt agaaaggagc ccagcatcga actgctgaat gagaaagagg
     1621 ctagtgggtg gggtgcaacg gcaggaccaa atttggccat cccacttcaa ctgggccacc
     1681 ttaatcccca ccagaacaac cagaatccac tccccaggtc tcagctgcaa aggtggaccc
     1741 acagcctatt ggtagattta tacaatgaat tgaaatctct gtgcacacac ttcaacaaga
     1801 gacaccagaa aacataacct cattttgggt ttcacttcct tgactcttca gacatggtca
     1861 ccacgatctg tagaaccatc cttgaaaaga ggggaatcca tgaatactga gggtgccatg
     1921 agcctagcag acaacatgta aaagggcagg ctaagagaca acttggctga agcaaatccc
     1981 aagtcttaag ggaccattat taaaagttca ggccccaccc ccagctagca gtcatgctag
     2041 ctgtactttg agggaagtgg gagaaaaaaa aaaaacagtt tacagttaag tttctaaaac
     2101 aataggtggt gagaaggcac ctgctttgaa atgttggtac catgttgttt gtggtcccat
     2161 ccgcccacct tctcccagct tcttagactt gctaaacctt gtcaggctcc ggcaggaagc
     2221 tctgaggtct aaaccacaaa gtctatgtac attcaggact tcctgtgaga gctcacggag
     2281 ggttgaactg ctcttttctc tgaacctgaa cattcattgt tttagctccc agagttaatt
     2341 attaagaata atgatgaatg gaagcccata gcttcctgaa attcaaacat gaaatccagt
     2401 caagtaacag tcatcacaag atcaacctag gaagataaat gaaggtctta gcactgcccc
     2461 ctttctcctt cctcattgca gtcctgtgct attccatcag ccatcctgcc agaatggctc
     2521 ctatcccatt cccttcctga agccctccct ggccttacca acccacgctg tgcttttctc
     2581 ctgaaatcct gtggcattat atatcataca gaacacgtat tgcctctaac tatttaatcc
     2641 ttcatcattt actcattcaa caaacattta ttgaacttct actacatacc aagctctgtg
     2701 ctaggtacta ggaaaacaga ggtgtacatg gcatctttgc tctcaaggca ctcactgtct
     2761 agttggggga ggagtagact aattacagga taaatgtaac cgtgtgataa gtataggtca
     2821 gaggccaata caggagccca gaggaaggac ttggaatctg gattgagtga tgggactggg
     2881 gtgacacaga aggcttcatg gaggaggtgg catttgaact gagttgtaat agatgagtag
     2941 aactggtgaa gcagaggtgc agaattaccc aagtagaggg accagcaaga ggaagctcag
     3001 gccgactacc tgtttatata aatatgttat tcatttttca actactatgt ttcatcaatt
     3061 tgaagatacc attgattttt aactgacacc attatttaca taccacgaga aaaaaaaaaa
     3121 ccactctcaa tcacagtgtt aacaaatgct aagttacaat caattttagg cccaacccca
     3181 ttcctgaggt tttaaaatgt gaataaaaag tgaattttag aagccatgaa atgcatggtt
     3241 aacaagcgtc ctgaggacgt tgaccgtttc tcagcattgc ccgtaccact ttactgaaaa
     3301 tttcactggc cagttgactc aatgggtgag tacagtcttg atgaaaagca gggaggtgaa
     3361 catccgtggc atctacatac ggaagataca ctccctggcc tgccggaatc tccaccgtga
     3421 ggcggaaaac acaggcctca ctcaagattt gtgttgcagt cacccctgct gaggttgtgt
     3481 gatctcccac tgagcctgtc ccagagtgtg gaccttctga gaagtggtca ggccagctgc
     3541 agaatgcctt actgagcttg tgagaaaaaa aaaatcgatg attcagtagc ttaggttggg
     3601 gcccgagact ctcttatttt taacaataac aattctgagg ggttttcaag tggggaacca
     3661 caggtgtgat ggtccaatac tggtcctcca attattaatc atcagtgact tgtcaaacct
     3721 gaggacttta tagataatac agcgttgtaa gaaaagcggc cacagtccag ttaaagaatc
     3781 ctctacgggt aacgttcact acgatgaatt catcctggtt ggaagatata tttaggtaat
     3841 ttgagacact ggaacaccct agagtgtcac atgaagatgg aaaattccgg tctttttgat
     3901 atcctccctg ctctccctaa aagcagtctg atcctagcaa ctgggtcagc ctagctccaa
     3961 gggcaccttg gctgctgacc agcagtttca tctcagtctt ccttctgcag tctctagggt
     4021 gagctcgcct gggctggctg ggctgcagcc acacggttcc tcaagctcac ccatgtgttc
     4081 cccactgcag gaccattgca cgtgctgacc ccactgccca cacccttcac ctggctcttc
     4141 acccgtccac actcttcttt caggactcag attgagggtc atgaaagagg cccttcctga
     4201 cccctgaact ctgctgtgac atgaaccttg tgagaccatc tcacctctgt gtctcattct
     4261 gtggtcctct agttcaaagg aggatgaggc ccacaggtac tgcagccaga aggttctgac
     4321 tctctctcac tggctttgaa agcttgaata agttactcag cctctttgaa cattggtttc
     4381 ctcatctgta aaatggggat aacacctcac agggttaaag tgaggattaa ctagaaataa
     4441 tgtctgtaaa tgtaactggg atgccctggt gtacagcaga aatctgaaaa ctctgagctt
     4501 tctttctggc ttgatacctg agaatgaata cgttggatag cggatacaaa ttgtccagta
     4561 ttggaaagag acacaacccg ttttaaa
//
LOCUS       XM_032608300            1904 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 66 member 1
            (SLC66A1), transcript variant X1, mRNA.
ACCESSION   XM_032608300
VERSION     XM_032608300.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1904
                     /gene="SLC66A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741563"
     CDS             103..1158
                     /gene="SLC66A1"
                     /codon_start=1
                     /product="lysosomal amino acid transporter 1 homolog
                     isoform X1"
                     /protein_id="XP_032464191.1"
                     /db_xref="GeneID:116741563"
                     /translation="MVWRKLGSRNFSSCPNGSSQWIWDVFGECAWDDWDKASVGLGLI
                     SILCFAASTLPQYIKACKMGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTA
                     VYYVLADVLMLSLYFHYKFKKRPSLWSAPINSVLLFILGVACTAPLLSSAGLVAAPRE
                     VFRGRTLLSVEPGNKPFTRQEIIGFVIGSVSSMLYLLSRLPQIRTNFLRKSTQGISYS
                     LFALVMLGNTLYGLSVLLKNPEVGQGEGSYVLHHLPWLVGSLGVLLLDTIDLHTVPDI
                     QGCRHLIRAPATPPQLSRTQTQAKPRMTGTCRCHTQEGRSMGSDGAADPGLGRGGSWG
                     CLELPARPPTPNTSETS"
     misc_feature    211..396
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
     misc_feature    649..816
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
ORIGIN      
        1 tggagaaccc agaagccggg cggtggggag gctctagact tgagctgtcg cctgcctcag
       61 cacaccggct ccctccctcc ctccctccct ccctccgaag ccatggtctg gaggaagctg
      121 ggctccagaa acttctccag ctgccccaat ggctccagcc agtggatatg ggatgtgttt
      181 ggcgagtgtg cctgggatga ctgggacaag gccagcgtgg gcctgggctt gatctccatt
      241 ctctgctttg ctgcgtccac cctcccccag tacatcaagg cctgcaaaat gggcaatatg
      301 gaccaggctc tgtccctgtg gttcctcctg ggctggatcg gcggagactc ctgcaatctc
      361 atcggctcct tccttgctga ccagctgccc ctgcagacct acacagccgt gtattacgtc
      421 ttagccgacg tgctgatgct gtcgctgtac tttcattaca agtttaagaa acgcccctct
      481 ctgtggtctg cccccatcaa ttctgtgctg ttgttcatct tgggggtggc gtgtaccgcc
      541 ccactgctga gcagcgctgg cttggtggct gcccccaggg aggtcttccg ggggcggacg
      601 ctcttgtctg tggagccggg caataagccc ttcacgcggc aggaaatcat tggcttcgta
      661 atcggctccg tgtccagcat gctgtacctg ctctcccggc tgcctcagat ccgcaccaat
      721 ttcctgcgga agtcgacaca ggggatctcc tactcgctgt tcgccttggt gatgctgggg
      781 aacacgctgt atgggctaag cgtgctgctc aaaaaccccg aagtaggcca gggcgagggc
      841 agctatgtgc tgcaccacct gccctggctc gtgggcagcc tgggcgtcct gctgctcgac
      901 actatcgatc tccatacagt tcctgatata caggggtgcc gccacctcat cagagcgcca
      961 gccactcctc cccagctgag caggacccag acccaggcca agcccaggat gacggggacc
     1021 tgcagatgcc acactcagga agggagaagt atgggcagtg acggtgctgc tgaccctggg
     1081 ctgggccgtg gaggaagctg ggggtgccta gaactcccgg cccgaccgcc tacccccaac
     1141 acctccgaaa cctcgtgagc tgacccttcc ggaagccctg actgacggac tcttccagga
     1201 gcaggtcagc ccccagggcc ggcccacccc gccttgggat tcccccccag ggtctgaggc
     1261 aactgtccgt ccctggagcc tgaagggagg gcctgcagcc gagacctcgc ctctcagaag
     1321 gcagtgcagc tggccctcag ctcacctacc tcattctgcc tgcttccccc acccgaccgc
     1381 ctggggagga gcccagctca gcctggtgca cgtggactgt acagtcgact gcagatggcc
     1441 tagtaaacgg tactccctgt gaggcccgtc ctggtgctcc tttcctggtg ccgggctctg
     1501 cgctgctctg gggcacagtg atggatggcg ttcggggtcc cacctacagg caggccccag
     1561 gtgggggcct aagggggtca ggatgtggga gagccaggcc agagggtact gtgtctgctg
     1621 gcccgcccct gcccagcctc ttgggcctcc agtttcttca acctgcttct ctgtggcagg
     1681 ctccacacct ggtggtgggg acacagcagt gagaaagaca ctcctccaac aggatccctg
     1741 ctccgcggtg ctcagcaaga agcggaatag ttaaggttca gactttggtt ctgcatctca
     1801 acctctctgt gccacagtta cctcatctgt gcaatgggat gacagtatta ccactttata
     1861 cgtccttcta gggattaaat aaaatggtgt gcttgtagat gtta
//
LOCUS       XM_032608309            1370 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 66 member 1
            (SLC66A1), transcript variant X2, mRNA.
ACCESSION   XM_032608309
VERSION     XM_032608309.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1370
                     /gene="SLC66A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741563"
     CDS             44..1099
                     /gene="SLC66A1"
                     /codon_start=1
                     /product="lysosomal amino acid transporter 1 homolog
                     isoform X1"
                     /protein_id="XP_032464200.1"
                     /db_xref="GeneID:116741563"
                     /translation="MVWRKLGSRNFSSCPNGSSQWIWDVFGECAWDDWDKASVGLGLI
                     SILCFAASTLPQYIKACKMGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTA
                     VYYVLADVLMLSLYFHYKFKKRPSLWSAPINSVLLFILGVACTAPLLSSAGLVAAPRE
                     VFRGRTLLSVEPGNKPFTRQEIIGFVIGSVSSMLYLLSRLPQIRTNFLRKSTQGISYS
                     LFALVMLGNTLYGLSVLLKNPEVGQGEGSYVLHHLPWLVGSLGVLLLDTIDLHTVPDI
                     QGCRHLIRAPATPPQLSRTQTQAKPRMTGTCRCHTQEGRSMGSDGAADPGLGRGGSWG
                     CLELPARPPTPNTSETS"
     misc_feature    152..337
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
     misc_feature    590..757
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
ORIGIN      
        1 gcacaccggc tccctccctc cctccctccc tccctccgaa gccatggtct ggaggaagct
       61 gggctccaga aacttctcca gctgccccaa tggctccagc cagtggatat gggatgtgtt
      121 tggcgagtgt gcctgggatg actgggacaa ggccagcgtg ggcctgggct tgatctccat
      181 tctctgcttt gctgcgtcca ccctccccca gtacatcaag gcctgcaaaa tgggcaatat
      241 ggaccaggct ctgtccctgt ggttcctcct gggctggatc ggcggagact cctgcaatct
      301 catcggctcc ttccttgctg accagctgcc cctgcagacc tacacagccg tgtattacgt
      361 cttagccgac gtgctgatgc tgtcgctgta ctttcattac aagtttaaga aacgcccctc
      421 tctgtggtct gcccccatca attctgtgct gttgttcatc ttgggggtgg cgtgtaccgc
      481 cccactgctg agcagcgctg gcttggtggc tgcccccagg gaggtcttcc gggggcggac
      541 gctcttgtct gtggagccgg gcaataagcc cttcacgcgg caggaaatca ttggcttcgt
      601 aatcggctcc gtgtccagca tgctgtacct gctctcccgg ctgcctcaga tccgcaccaa
      661 tttcctgcgg aagtcgacac aggggatctc ctactcgctg ttcgccttgg tgatgctggg
      721 gaacacgctg tatgggctaa gcgtgctgct caaaaacccc gaagtaggcc agggcgaggg
      781 cagctatgtg ctgcaccacc tgccctggct cgtgggcagc ctgggcgtcc tgctgctcga
      841 cactatcgat ctccatacag ttcctgatat acaggggtgc cgccacctca tcagagcgcc
      901 agccactcct ccccagctga gcaggaccca gacccaggcc aagcccagga tgacggggac
      961 ctgcagatgc cacactcagg aagggagaag tatgggcagt gacggtgctg ctgaccctgg
     1021 gctgggccgt ggaggaagct gggggtgcct agaactcccg gcccgaccgc ctacccccaa
     1081 cacctccgaa acctcgtgag ctgacccttc cggaagccct gactgacgga ctcttccagg
     1141 agcaggctcc acacctggtg gtggggacac agcagtgaga aagacactcc tccaacagga
     1201 tccctgctcc gcggtgctca gcaagaagcg gaatagttaa ggttcagact ttggttctgc
     1261 atctcaacct ctctgtgcca cagttacctc atctgtgcaa tgggatgaca gtattaccac
     1321 tttatacgtc cttctaggga ttaaataaaa tggtgtgctt gtagatgtta
//
LOCUS       XM_032608318            1760 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 66 member 1
            (SLC66A1), transcript variant X3, mRNA.
ACCESSION   XM_032608318
VERSION     XM_032608318.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1760
                     /gene="SLC66A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741563"
     CDS             103..1014
                     /gene="SLC66A1"
                     /codon_start=1
                     /product="lysosomal amino acid transporter 1 homolog
                     isoform X2"
                     /protein_id="XP_032464209.1"
                     /db_xref="GeneID:116741563"
                     /translation="MVWRKLGSRNFSSCPNGSSQWIWDVFGECAWDDWDKASVGLGLI
                     SILCFAASTLPQYIKACKMGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTA
                     VYYVLADVLMLSLYFHYKFKKRPSLSLHAAGNHWLRNRLRVQHAVPALPAASDPHQFP
                     AEVDTGDLLLAVRLGDAGEHAVWAKRAAQKPRSRPGRGQLCAAPPALARGQPGRPAAR
                     HYHLHTVPDIQGCRHLIRAPATPPQLSRTQTQAKPRMTGTCRCHTQEGRSMGSDGAAD
                     PGLGRGGSWGCLELPARPPTPNTSETS"
     misc_feature    211..396
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
ORIGIN      
        1 tggagaaccc agaagccggg cggtggggag gctctagact tgagctgtcg cctgcctcag
       61 cacaccggct ccctccctcc ctccctccct ccctccgaag ccatggtctg gaggaagctg
      121 ggctccagaa acttctccag ctgccccaat ggctccagcc agtggatatg ggatgtgttt
      181 ggcgagtgtg cctgggatga ctgggacaag gccagcgtgg gcctgggctt gatctccatt
      241 ctctgctttg ctgcgtccac cctcccccag tacatcaagg cctgcaaaat gggcaatatg
      301 gaccaggctc tgtccctgtg gttcctcctg ggctggatcg gcggagactc ctgcaatctc
      361 atcggctcct tccttgctga ccagctgccc ctgcagacct acacagccgt gtattacgtc
      421 ttagccgacg tgctgatgct gtcgctgtac tttcattaca agtttaagaa acgcccctct
      481 ctgtcccttc acgcggcagg aaatcattgg cttcgtaatc ggctccgtgt ccagcatgct
      541 gtacctgctc tcccggctgc ctcagatccg caccaatttc ctgcggaagt cgacacaggg
      601 gatctcctac tcgctgttcg ccttggtgat gctggggaac acgctgtatg ggctaagcgt
      661 gctgctcaaa aaccccgaag taggccaggg cgagggcagc tatgtgctgc accacctgcc
      721 ctggctcgtg ggcagcctgg gcgtcctgct gctcgacact atcatctcca tacagttcct
      781 gatatacagg ggtgccgcca cctcatcaga gcgccagcca ctcctcccca gctgagcagg
      841 acccagaccc aggccaagcc caggatgacg gggacctgca gatgccacac tcaggaaggg
      901 agaagtatgg gcagtgacgg tgctgctgac cctgggctgg gccgtggagg aagctggggg
      961 tgcctagaac tcccggcccg accgcctacc cccaacacct ccgaaacctc gtgagctgac
     1021 ccttccggaa gccctgactg acggactctt ccaggagcag gtcagccccc agggccggcc
     1081 caccccgcct tgggattccc ccccagggtc tgaggcaact gtccgtccct ggagcctgaa
     1141 gggagggcct gcagccgaga cctcgcctct cagaaggcag tgcagctggc cctcagctca
     1201 cctacctcat tctgcctgct tcccccaccc gaccgcctgg ggaggagccc agctcagcct
     1261 ggtgcacgtg gactgtacag tcgactgcag atggcctagt aaacggtact ccctgtgagg
     1321 cccgtcctgg tgctcctttc ctggtgccgg gctctgcgct gctctggggc acagtgatgg
     1381 atggcgttcg gggtcccacc tacaggcagg ccccaggtgg gggcctaagg gggtcaggat
     1441 gtgggagagc caggccagag ggtactgtgt ctgctggccc gcccctgccc agcctcttgg
     1501 gcctccagtt tcttcaacct gcttctctgt ggcaggctcc acacctggtg gtggggacac
     1561 agcagtgaga aagacactcc tccaacagga tccctgctcc gcggtgctca gcaagaagcg
     1621 gaatagttaa ggttcagact ttggttctgc atctcaacct ctctgtgcca cagttacctc
     1681 atctgtgcaa tgggatgaca gtattaccac tttatacgtc cttctaggga ttaaataaaa
     1741 tggtgtgctt gtagatgtta
//
LOCUS       XM_032608329            1055 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 66 member 1
            (SLC66A1), transcript variant X4, mRNA.
ACCESSION   XM_032608329
VERSION     XM_032608329.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1055
                     /gene="SLC66A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741563"
     CDS             44..919
                     /gene="SLC66A1"
                     /codon_start=1
                     /product="lysosomal amino acid transporter 1 homolog
                     isoform X3"
                     /protein_id="XP_032464220.1"
                     /db_xref="GeneID:116741563"
                     /translation="MVWRKLGSRNFSSCPNGSSQWIWDVFGECAWDDWDKASVGLGLI
                     SILCFAASTLPQYIKACKMGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTA
                     VYYVLADVLMLSLYFHYKFKKRPSLWSAPINSVLLFILGVACTAPLLSSAGLVAAPRE
                     VFRGRTLLSVEPGNKPFTRQEIIGFVIGSVSSMLYLLSRLPQIRTNFLRKSTQGISYS
                     LFALVMLGNTLYGLSVLLKNPEVGQGEGSYVLHHLPWLVGSLGVLLLDTIISIQFLIY
                     RGAATSSERQPLLPS"
     misc_feature    152..337
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
     misc_feature    590..757
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
ORIGIN      
        1 gcacaccggc tccctccctc cctccctccc tccctccgaa gccatggtct ggaggaagct
       61 gggctccaga aacttctcca gctgccccaa tggctccagc cagtggatat gggatgtgtt
      121 tggcgagtgt gcctgggatg actgggacaa ggccagcgtg ggcctgggct tgatctccat
      181 tctctgcttt gctgcgtcca ccctccccca gtacatcaag gcctgcaaaa tgggcaatat
      241 ggaccaggct ctgtccctgt ggttcctcct gggctggatc ggcggagact cctgcaatct
      301 catcggctcc ttccttgctg accagctgcc cctgcagacc tacacagccg tgtattacgt
      361 cttagccgac gtgctgatgc tgtcgctgta ctttcattac aagtttaaga aacgcccctc
      421 tctgtggtct gcccccatca attctgtgct gttgttcatc ttgggggtgg cgtgtaccgc
      481 cccactgctg agcagcgctg gcttggtggc tgcccccagg gaggtcttcc gggggcggac
      541 gctcttgtct gtggagccgg gcaataagcc cttcacgcgg caggaaatca ttggcttcgt
      601 aatcggctcc gtgtccagca tgctgtacct gctctcccgg ctgcctcaga tccgcaccaa
      661 tttcctgcgg aagtcgacac aggggatctc ctactcgctg ttcgccttgg tgatgctggg
      721 gaacacgctg tatgggctaa gcgtgctgct caaaaacccc gaagtaggcc agggcgaggg
      781 cagctatgtg ctgcaccacc tgccctggct cgtgggcagc ctgggcgtcc tgctgctcga
      841 cactatcatc tccatacagt tcctgatata caggggtgcc gccacctcat cagagcgcca
      901 gccactcctc cccagctgag caggacccag acccaggcca agcccaggat gacggggacc
      961 tgcagatgcc acactcagga agggagaagt atgggcagtg acggtgctgc tgaccctggg
     1021 ctgggccgtg gaggaagctg ggggtgccta gaact
//
LOCUS       XM_032608338            1699 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 66 member 1
            (SLC66A1), transcript variant X5, mRNA.
ACCESSION   XM_032608338
VERSION     XM_032608338.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1699
                     /gene="SLC66A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741563"
     CDS             84..953
                     /gene="SLC66A1"
                     /codon_start=1
                     /product="lysosomal amino acid transporter 1 homolog
                     isoform X4"
                     /protein_id="XP_032464229.1"
                     /db_xref="GeneID:116741563"
                     /translation="MGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYV
                     LADVLMLSLYFHYKFKKRPSLWSAPINSVLLFILGVACTAPLLSSAGLVAAPREVFRG
                     RTLLSVEPGNKPFTRQEIIGFVIGSVSSMLYLLSRLPQIRTNFLRKSTQGISYSLFAL
                     VMLGNTLYGLSVLLKNPEVGQGEGSYVLHHLPWLVGSLGVLLLDTIDLHTVPDIQGCR
                     HLIRAPATPPQLSRTQTQAKPRMTGTCRCHTQEGRSMGSDGAADPGLGRGGSWGCLEL
                     PARPPTPNTSETS"
     misc_feature    444..611
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
ORIGIN      
        1 agctgatgaa ggcaggagct ggagaaccca gaagccgggc ggtggggagg ctctagactt
       61 gccagtacat caaggcctgc aaaatgggca atatggacca ggctctgtcc ctgtggttcc
      121 tcctgggctg gatcggcgga gactcctgca atctcatcgg ctccttcctt gctgaccagc
      181 tgcccctgca gacctacaca gccgtgtatt acgtcttagc cgacgtgctg atgctgtcgc
      241 tgtactttca ttacaagttt aagaaacgcc cctctctgtg gtctgccccc atcaattctg
      301 tgctgttgtt catcttgggg gtggcgtgta ccgccccact gctgagcagc gctggcttgg
      361 tggctgcccc cagggaggtc ttccgggggc ggacgctctt gtctgtggag ccgggcaata
      421 agcccttcac gcggcaggaa atcattggct tcgtaatcgg ctccgtgtcc agcatgctgt
      481 acctgctctc ccggctgcct cagatccgca ccaatttcct gcggaagtcg acacagggga
      541 tctcctactc gctgttcgcc ttggtgatgc tggggaacac gctgtatggg ctaagcgtgc
      601 tgctcaaaaa ccccgaagta ggccagggcg agggcagcta tgtgctgcac cacctgccct
      661 ggctcgtggg cagcctgggc gtcctgctgc tcgacactat cgatctccat acagttcctg
      721 atatacaggg gtgccgccac ctcatcagag cgccagccac tcctccccag ctgagcagga
      781 cccagaccca ggccaagccc aggatgacgg ggacctgcag atgccacact caggaaggga
      841 gaagtatggg cagtgacggt gctgctgacc ctgggctggg ccgtggagga agctgggggt
      901 gcctagaact cccggcccga ccgcctaccc ccaacacctc cgaaacctcg tgagctgacc
      961 cttccggaag ccctgactga cggactcttc caggagcagg tcagccccca gggccggccc
     1021 accccgcctt gggattcccc cccagggtct gaggcaactg tccgtccctg gagcctgaag
     1081 ggagggcctg cagccgagac ctcgcctctc agaaggcagt gcagctggcc ctcagctcac
     1141 ctacctcatt ctgcctgctt cccccacccg accgcctggg gaggagccca gctcagcctg
     1201 gtgcacgtgg actgtacagt cgactgcaga tggcctagta aacggtactc cctgtgaggc
     1261 ccgtcctggt gctcctttcc tggtgccggg ctctgcgctg ctctggggca cagtgatgga
     1321 tggcgttcgg ggtcccacct acaggcaggc cccaggtggg ggcctaaggg ggtcaggatg
     1381 tgggagagcc aggccagagg gtactgtgtc tgctggcccg cccctgccca gcctcttggg
     1441 cctccagttt cttcaacctg cttctctgtg gcaggctcca cacctggtgg tggggacaca
     1501 gcagtgagaa agacactcct ccaacaggat ccctgctccg cggtgctcag caagaagcgg
     1561 aatagttaag gttcagactt tggttctgca tctcaacctc tctgtgccac agttacctca
     1621 tctgtgcaat gggatgacag tattaccact ttatacgtcc ttctagggat taaataaaat
     1681 ggtgtgcttg tagatgtta
//
LOCUS       XM_032608348            1667 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 66 member 1
            (SLC66A1), transcript variant X6, mRNA.
ACCESSION   XM_032608348
VERSION     XM_032608348.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1667
                     /gene="SLC66A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741563"
     CDS             103..921
                     /gene="SLC66A1"
                     /codon_start=1
                     /product="lysosomal amino acid transporter 1 homolog
                     isoform X5"
                     /protein_id="XP_032464239.1"
                     /db_xref="GeneID:116741563"
                     /translation="MVWRKLGSRNFSSCPNGSSQWIWDVFGECAWDDWDKASVGLGLI
                     SILCFAASTLPQYIKACKMGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTA
                     VYYVLADVLMLSLYFHYKFKKRPSLFPAEVDTGDLLLAVRLGDAGEHAVWAKRAAQKP
                     RSRPGRGQLCAAPPALARGQPGRPAARHYHLHTVPDIQGCRHLIRAPATPPQLSRTQT
                     QAKPRMTGTCRCHTQEGRSMGSDGAADPGLGRGGSWGCLELPARPPTPNTSETS"
     misc_feature    211..396
                     /gene="SLC66A1"
                     /note="PQ loop repeat; Region: PQ-loop; pfam04193"
                     /db_xref="CDD:461220"
ORIGIN      
        1 tggagaaccc agaagccggg cggtggggag gctctagact tgagctgtcg cctgcctcag
       61 cacaccggct ccctccctcc ctccctccct ccctccgaag ccatggtctg gaggaagctg
      121 ggctccagaa acttctccag ctgccccaat ggctccagcc agtggatatg ggatgtgttt
      181 ggcgagtgtg cctgggatga ctgggacaag gccagcgtgg gcctgggctt gatctccatt
      241 ctctgctttg ctgcgtccac cctcccccag tacatcaagg cctgcaaaat gggcaatatg
      301 gaccaggctc tgtccctgtg gttcctcctg ggctggatcg gcggagactc ctgcaatctc
      361 atcggctcct tccttgctga ccagctgccc ctgcagacct acacagccgt gtattacgtc
      421 ttagccgacg tgctgatgct gtcgctgtac tttcattaca agtttaagaa acgcccctct
      481 ctgtttcctg cggaagtcga cacaggggat ctcctactcg ctgttcgcct tggtgatgct
      541 ggggaacacg ctgtatgggc taagcgtgct gctcaaaaac cccgaagtag gccagggcga
      601 gggcagctat gtgctgcacc acctgccctg gctcgtgggc agcctgggcg tcctgctgct
      661 cgacactatc atctccatac agttcctgat atacaggggt gccgccacct catcagagcg
      721 ccagccactc ctccccagct gagcaggacc cagacccagg ccaagcccag gatgacgggg
      781 acctgcagat gccacactca ggaagggaga agtatgggca gtgacggtgc tgctgaccct
      841 gggctgggcc gtggaggaag ctgggggtgc ctagaactcc cggcccgacc gcctaccccc
      901 aacacctccg aaacctcgtg agctgaccct tccggaagcc ctgactgacg gactcttcca
      961 ggagcaggtc agcccccagg gccggcccac cccgccttgg gattcccccc cagggtctga
     1021 ggcaactgtc cgtccctgga gcctgaaggg agggcctgca gccgagacct cgcctctcag
     1081 aaggcagtgc agctggccct cagctcacct acctcattct gcctgcttcc cccacccgac
     1141 cgcctgggga ggagcccagc tcagcctggt gcacgtggac tgtacagtcg actgcagatg
     1201 gcctagtaaa cggtactccc tgtgaggccc gtcctggtgc tcctttcctg gtgccgggct
     1261 ctgcgctgct ctggggcaca gtgatggatg gcgttcgggg tcccacctac aggcaggccc
     1321 caggtggggg cctaaggggg tcaggatgtg ggagagccag gccagagggt actgtgtctg
     1381 ctggcccgcc cctgcccagc ctcttgggcc tccagtttct tcaacctgct tctctgtggc
     1441 aggctccaca cctggtggtg gggacacagc agtgagaaag acactcctcc aacaggatcc
     1501 ctgctccgcg gtgctcagca agaagcggaa tagttaaggt tcagactttg gttctgcatc
     1561 tcaacctctc tgtgccacag ttacctcatc tgtgcaatgg gatgacagta ttaccacttt
     1621 atacgtcctt ctagggatta aataaaatgg tgtgcttgta gatgtta
//
LOCUS       XM_032608361            2240 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            8 (PPP1R8), transcript variant X1, mRNA.
ACCESSION   XM_032608361
VERSION     XM_032608361.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2240
                     /gene="PPP1R8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 3 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741578"
     CDS             74..1129
                     /gene="PPP1R8"
                     /codon_start=1
                     /product="nuclear inhibitor of protein phosphatase 1
                     isoform X1"
                     /protein_id="XP_032464252.1"
                     /db_xref="GeneID:116741578"
                     /translation="MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIID
                     EKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLE
                     PHKPQQIPIDSTVSFGASTRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEE
                     TELDNLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPS
                     VGRFRNMVQTAVVPVKKKRVEGPGSLGLEESGNRRMQNFAFSGGLYGGLPPTHSEAGS
                     QPHGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVTMNPAPNPAVYNPEAVNEPKKKK
                     YAKEAWPGKKPTPSLLI"
     misc_feature    134..457
                     /gene="PPP1R8"
                     /note="forkhead associated (FHA) domain found in protein
                     phosphatase 1 regulatory inhibitor subunit 8 (PPP1R8) and
                     similar proteins; Region: FHA_PPP1R8; cd22674"
                     /db_xref="CDD:438726"
     misc_feature    order(227..232,269..271,275..280,284..286,341..343,
                     347..352,422..424)
                     /gene="PPP1R8"
                     /note="putative phosphopeptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438726"
ORIGIN      
        1 ccgcctctct cctctgggtc ttccagtttc ccggcgtgct tcaggcccgc caaatgggag
       61 ggggagaagc aagatggcgg cagccgcgaa ctccggctcc agcctcccgc tgtttgactg
      121 cccgacctgg gcaggtaaac cccctcctgg tttacatctg gatgtagtca aaggagacaa
      181 gctaattgag aaactgatca ttgatgagaa gaagtattac ttatttggga gaaaccctga
      241 tttgtgtgac tttaccattg accaccagtc ttgctctcgg gtccacgctg ccttggtcta
      301 ccataagcat ctgaagagag ttttcctaat agatctcaac agtacacacg gcactttctt
      361 gggtcacatt cggttggagc ctcacaagcc tcagcaaatt cccatcgatt ccacggtctc
      421 atttggtgca tccacaaggg catacactct gcgtgagaag cctcagacat tgccatcggc
      481 tgtgaaagga gatgagaaga tgggtggaga ggatgatgaa ctcaagggct tactggggct
      541 tccagaggag gaaacagagc ttgataacct gacggagttc aacactgccc acaacaagcg
      601 catttccact ctcaccattg aggaggggaa tctggacatt cagagaccaa agaggaagag
      661 gaagaactca cgggtgacct ttagtgagga tgatgagatc atcaacccag aggatgtgga
      721 tccctcagtt ggtcgcttcc ggaacatggt gcagactgca gtggtcccag tcaagaagaa
      781 gcgggtggag ggccctggct ccctgggcct ggaggaatca gggaacagac gcatgcagaa
      841 ctttgcattc agtggaggac tctatggggg cctgcccccc acgcacagtg aagccggctc
      901 ccagccgcat ggcatccacg ggacagcact catcggtggc ttgcccatgc catacccaaa
      961 cctcgctcct gacgtggact tgactcccgt cgtgccgtca gcagtgacca tgaaccctgc
     1021 accaaaccct gccgtctata accctgaagc tgtcaacgaa cccaagaaga aaaaatatgc
     1081 gaaagaggct tggccgggca agaagcccac accttcctta ctgatttgat atttttggta
     1141 atggaggagg gtgggattgg gtgggaacag ggtggaaggg tgatggggga gctaatgaat
     1201 tagggagaaa aactttccat gtgtgcagta tcgtctttca gaatgtctcc tggggtccta
     1261 accatgtaat attaaaactg ggggtggggt tgaagtatcc cagaaagacc tgtcttcaga
     1321 acactttcat tgaagagaaa tgtttcatac atccttttaa atagactgcc ctggctcttt
     1381 tcctctcttt ccattatctc cttttttctt ttctccctct ttctaggatc actttttaaa
     1441 aaatcattta ccccagggag agactccagg ccctcaggtt gaatgcagag ctgtggaggt
     1501 gacagtagca ttgccagctt tgtgggttta gcagcctgat ttatatttac tatcctgcaa
     1561 gtcccaggta tcagaagggt tgccacggat tccaggttaa caagagggtt tagaatgctt
     1621 cagttaagct aaggtttaaa acaactcaga agttttcctg ggtcggtggt tttgaggtcc
     1681 agtagttagg cttttctctt ttgtcctttc tgttagaatg agaacatttt gatttttctt
     1741 catctgtgac cagtgccata gacacaggtt gatagtttta aacttacagt attgtttgaa
     1801 ctttacctgt ttttcttgtc aaacctgagt actctacttg ctgaagtttc tcatttgatt
     1861 ccagagtact gtcctctact ctctaaggca ttactttcct tttcaagtgt gttatgaagg
     1921 caatataaag gatatgacca gttagagcaa tttcaattaa aaaggaaaag attttacttt
     1981 gaagtaacag atatctcgaa gaggacattt tcagatgttg atttggaggc tctttccccc
     2041 ccttgactga gagctctcgt tgtccagagc tccaagacta gacctggtta acaaacatag
     2101 gagacgaagg taggacacat tgatgtgagc gttgtacaga gatttgtaca tttgtgtaat
     2161 aggccttttc acgctttatg tgtagctttt tacctgtaac ctttattaca ttgtaaatta
     2221 aacgtaactt ttgtcattcg
//
LOCUS       XM_032608372            2730 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            8 (PPP1R8), transcript variant X2, mRNA.
ACCESSION   XM_032608372
VERSION     XM_032608372.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2730
                     /gene="PPP1R8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741578"
     CDS             735..1619
                     /gene="PPP1R8"
                     /codon_start=1
                     /product="nuclear inhibitor of protein phosphatase 1
                     isoform X2"
                     /protein_id="XP_032464263.1"
                     /db_xref="GeneID:116741578"
                     /translation="MCWQELLSLLQLRFVCLFVCLFSSLTFLIWLFPAHGTFLGHIRL
                     EPHKPQQIPIDSTVSFGASTRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEE
                     ETELDNLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDP
                     SVGRFRNMVQTAVVPVKKKRVEGPGSLGLEESGNRRMQNFAFSGGLYGGLPPTHSEAG
                     SQPHGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVTMNPAPNPAVYNPEAVNEPKKK
                     KYAKEAWPGKKPTPSLLI"
     misc_feature    <810..947
                     /gene="PPP1R8"
                     /note="forkhead associated (FHA) domain superfamily;
                     Region: FHA; cl00062"
                     /db_xref="CDD:469597"
ORIGIN      
        1 aaatgggagg gggagaagca agatggcggc agccgcgaac tccggctcca gcctcccgct
       61 gtttgactgc ccgacctggg caggtaaacc ccctcctggt ttacatctgg atgtagtcaa
      121 aggagacaag ctaattgaga aactgatcat tgatgagaag aagtattact tatttgggag
      181 aaaccctgat ttgtgtgact ttaccattga ccaccagtct tgctctcggg tccacgctgc
      241 cttggtctac cataagcatc tgaagagagt tttcctaata gatctcaaca gtaaatgcag
      301 acatggaaag atatccagac tctccagtag gattgtggct tgccttgcca ttgatattgc
      361 acctgtttca gccaacctca tttcttatcc tggggaaacc ccaagcataa ctgccaccag
      421 gccagcaatt tctatgttcc ttagacttgg ggctggagag gtcagaccat agcaattcct
      481 gtctcctgcc ttagcgggca tgcctattgc tgggttggaa ccattcctgc tggacccaga
      541 atggagccaa gcctgtctgg cagcagagaa caagcagtgg tatttgttat gtggggtaac
      601 agcaggtctg aagatgtgta agaaatccac tgaagagatt caagattcag tgaaggagtt
      661 tccttttcat tgtgacccat gacaagggat gcaaagtgga cccagagcca tttccatttt
      721 aaaaagcaaa actgatgtgc tggcaggagc tactctccct tctacaactc aggtttgttt
      781 gtttgtttgt ttgtttgttt tcctctctta catttctgat ttggttattc ccagcacacg
      841 gcactttctt gggtcacatt cggttggagc ctcacaagcc tcagcaaatt cccatcgatt
      901 ccacggtctc atttggtgca tccacaaggg catacactct gcgtgagaag cctcagacat
      961 tgccatcggc tgtgaaagga gatgagaaga tgggtggaga ggatgatgaa ctcaagggct
     1021 tactggggct tccagaggag gaaacagagc ttgataacct gacggagttc aacactgccc
     1081 acaacaagcg catttccact ctcaccattg aggaggggaa tctggacatt cagagaccaa
     1141 agaggaagag gaagaactca cgggtgacct ttagtgagga tgatgagatc atcaacccag
     1201 aggatgtgga tccctcagtt ggtcgcttcc ggaacatggt gcagactgca gtggtcccag
     1261 tcaagaagaa gcgggtggag ggccctggct ccctgggcct ggaggaatca gggaacagac
     1321 gcatgcagaa ctttgcattc agtggaggac tctatggggg cctgcccccc acgcacagtg
     1381 aagccggctc ccagccgcat ggcatccacg ggacagcact catcggtggc ttgcccatgc
     1441 catacccaaa cctcgctcct gacgtggact tgactcccgt cgtgccgtca gcagtgacca
     1501 tgaaccctgc accaaaccct gccgtctata accctgaagc tgtcaacgaa cccaagaaga
     1561 aaaaatatgc gaaagaggct tggccgggca agaagcccac accttcctta ctgatttgat
     1621 atttttggta atggaggagg gtgggattgg gtgggaacag ggtggaaggg tgatggggga
     1681 gctaatgaat tagggagaaa aactttccat gtgtgcagta tcgtctttca gaatgtctcc
     1741 tggggtccta accatgtaat attaaaactg ggggtggggt tgaagtatcc cagaaagacc
     1801 tgtcttcaga acactttcat tgaagagaaa tgtttcatac atccttttaa atagactgcc
     1861 ctggctcttt tcctctcttt ccattatctc cttttttctt ttctccctct ttctaggatc
     1921 actttttaaa aaatcattta ccccagggag agactccagg ccctcaggtt gaatgcagag
     1981 ctgtggaggt gacagtagca ttgccagctt tgtgggttta gcagcctgat ttatatttac
     2041 tatcctgcaa gtcccaggta tcagaagggt tgccacggat tccaggttaa caagagggtt
     2101 tagaatgctt cagttaagct aaggtttaaa acaactcaga agttttcctg ggtcggtggt
     2161 tttgaggtcc agtagttagg cttttctctt ttgtcctttc tgttagaatg agaacatttt
     2221 gatttttctt catctgtgac cagtgccata gacacaggtt gatagtttta aacttacagt
     2281 attgtttgaa ctttacctgt ttttcttgtc aaacctgagt actctacttg ctgaagtttc
     2341 tcatttgatt ccagagtact gtcctctact ctctaaggca ttactttcct tttcaagtgt
     2401 gttatgaagg caatataaag gatatgacca gttagagcaa tttcaattaa aaaggaaaag
     2461 attttacttt gaagtaacag atatctcgaa gaggacattt tcagatgttg atttggaggc
     2521 tctttccccc ccttgactga gagctctcgt tgtccagagc tccaagacta gacctggtta
     2581 acaaacatag gagacgaagg taggacacat tgatgtgagc gttgtacaga gatttgtaca
     2641 tttgtgtaat aggccttttc acgctttatg tgtagctttt tacctgtaac ctttattaca
     2701 ttgtaaatta aacgtaactt ttgtcattcg
//
LOCUS       XM_032608385            2948 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAB7B, member RAS oncogene family
            (RAB7B), mRNA.
ACCESSION   XM_032608385
VERSION     XM_032608385.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               VOSU01000011.1     151655637-151655834
            199-267             VOSU01000011.1     151663396-151663464
            268-394             VOSU01000011.1     151664009-151664135
            395-577             VOSU01000011.1     151664857-151665039
            578-578             "N"                1-1
            579-610             VOSU01000011.1     151665040-151665071
            611-736             VOSU01000011.1     151672965-151673090
            737-2948            VOSU01000011.1     151679701-151681912
FEATURES             Location/Qualifiers
     source          1..2948
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2948
                     /gene="RAB7B"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 long SRA reads, 3 Proteins, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741585"
     CDS             215..817
                     /gene="RAB7B"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:641..643,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: ras-related protein Rab-7b"
                     /protein_id="XP_032464276.1"
                     /db_xref="GeneID:116741585"
                     /translation="MNPQKKVDLKLIIIGALGVGKTSLLHRFVHKTFYEDYQTTLGAS
                     ILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLETFEALETW
                     RDEVLAKTIPMEQSYPMVVXGNKIDLADRQVPQEVALRLVXEKGIPYFEVSAKNDINV
                     VQAFEMLASRALSRYRSVLENYLTDSIKLSPEDQSKSSCC"
     misc_feature    239..721
                     /gene="RAB7B"
                     /note="Ras-related in brain (Rab) family of small
                     guanosine triphosphatases (GTPases); Region: Rab; cd00154"
                     /db_xref="CDD:206640"
     misc_feature    239..244
                     /gene="RAB7B"
                     /note="Rab subfamily motif 1 (RabSF1); other site"
                     /db_xref="CDD:206640"
     misc_feature    257..280
                     /gene="RAB7B"
                     /note="G1 box; other site"
                     /db_xref="CDD:206640"
     misc_feature    order(263..283,311..313,332..334,410..412,584..589,
                     593..595,671..679)
                     /gene="RAB7B"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206640"
     misc_feature    281..313
                     /gene="RAB7B"
                     /note="Rab subfamily motif 2 (RabSF2); other site"
                     /db_xref="CDD:206640"
     misc_feature    order(311..313,332..352)
                     /gene="RAB7B"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206640"
     misc_feature    332..334
                     /gene="RAB7B"
                     /note="G2 box; other site"
                     /db_xref="CDD:206640"
     misc_feature    order(335..337,341..349,392..394,398..400,419..424,
                     431..433,443..445,458..460)
                     /gene="RAB7B"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:206640"
     misc_feature    order(335..340,344..346,398..403,422..424,434..442)
                     /gene="RAB7B"
                     /note="GDI interaction site [active]"
                     /db_xref="CDD:206640"
     misc_feature    335..349
                     /gene="RAB7B"
                     /note="Rab family motif 1 (RabF1); other site"
                     /db_xref="CDD:206640"
     misc_feature    order(338..361,380..382,386..388)
                     /gene="RAB7B"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:206640"
     misc_feature    386..400
                     /gene="RAB7B"
                     /note="Rab family motif 2 (RabF2); other site"
                     /db_xref="CDD:206640"
     misc_feature    401..412
                     /gene="RAB7B"
                     /note="G3 box; other site"
                     /db_xref="CDD:206640"
     misc_feature    order(410..412,416..427,431..448)
                     /gene="RAB7B"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206640"
     misc_feature    order(419..427,431..436)
                     /gene="RAB7B"
                     /note="Rab family motif 3 (RabF3); other site"
                     /db_xref="CDD:206640"
     misc_feature    443..448
                     /gene="RAB7B"
                     /note="Rab family motif 4 (RabF4); other site"
                     /db_xref="CDD:206640"
     misc_feature    470..487
                     /gene="RAB7B"
                     /note="Rab family motif 5 (RabF5); other site"
                     /db_xref="CDD:206640"
     misc_feature    563..577
                     /gene="RAB7B"
                     /note="Rab subfamily motif 3 (RabSF3); other site"
                     /db_xref="CDD:206640"
     misc_feature    584..595
                     /gene="RAB7B"
                     /note="G4 box; other site"
                     /db_xref="CDD:206640"
     misc_feature    671..679
                     /gene="RAB7B"
                     /note="G5 box; other site"
                     /db_xref="CDD:206640"
     misc_feature    719..721
                     /gene="RAB7B"
                     /note="Rab subfamily motif 4 (RabSF4); other site"
                     /db_xref="CDD:206640"
ORIGIN      
        1 gagaggagga aaactcagaa ggaagtggct tagcctcaac aaactctttt ttactcccaa
       61 agcctttttc ctctaacccg gctgagactg ctgctctaag aggagacccc gacccagagg
      121 gattccccgc ctgtcgtcag aggctgaaag ggccctggaa gcttttctcg gttcctgtct
      181 attccagcag ccccagaggc tctgaagccc ctccatgaat cctcaaaaga aggtggacct
      241 caagctcatc atcatcggag ccctgggtgt tggaaagact tccctcctcc accgattcgt
      301 gcacaagaca ttttacgagg actatcagac cacactggga gccagcatcc tctccaagat
      361 tatcatactg gatgacacaa ctttgaagct acagatctgg gacacaggag gacaggagcg
      421 attccgctcc atggtgtcta ccttctacaa aggctctgat ggctgcatcc tggcttttga
      481 tgtcactgac ctggagacct ttgaagccct ggaaacctgg agggatgaag ttctggccaa
      541 aaccattcca atggagcagt cctaccccat ggtggtgnct gggaacaaga tcgatctggc
      601 agaccggcag gtgccacagg aggtagccct aagactggtg taagagaagg gtattcccta
      661 ttttgaagtc agtgccaaga atgacatcaa tgtggtacaa gccttcgaga tgctggccag
      721 tcgggctctg tcaaggtatc gaagcgtctt ggagaattac ctcacagact ccatcaagct
      781 ctcaccagaa gaccagtcca agagcagctg ctgctgacct tccagactcc cgctctgcac
      841 acccagggac agagcacgcg cagggcctgg tcatcctggg ccccccacca gccccactgc
      901 ccgcccaagc tcagatggca atccaggctc tgcggccaga gccctgaatc cctcacatct
      961 gcactggacc cagaaccaga gggtggccct gcctcaggct gagtgtagag aggccggggc
     1021 tgggcccttg agcctggatg aaactccgga tgtcacagcc agaccccaga agagtcacga
     1081 ttccctcgcg gactccagct ttcttgccac gcgcccttcc cagccacacc cctgctctag
     1141 aacgcacatc tctgcagaca ggccgccctc tctggagtcc tgttatgttc tcctatggac
     1201 tggccttcct cagcccatcc accaccaccg ccctcaagag ccacagcaca gctttggaca
     1261 agggtgcagc tcaggctccc tcgtaaccgg ggccagggag tgagggtcta cctcaacccc
     1321 tggcagcagc tgttcaggcc tgggacaccc cctgtttgtc ccctccagaa tgcaggactg
     1381 agggagtgca aggaaaaccc accggggact ggtgcatttc tccctgctga tgctcaggca
     1441 actcccataa ctctctttga gcttcagctt attcatccgt caaacgggag tcacatgtgc
     1501 cctgcccaca tcagtgtggt tttgaagacc agaacctctg cttgaatctc agttgctctt
     1561 gttgagatac atttactatt ctttcaacaa gtatttttga gtatctacta cgtacgatgc
     1621 attgaggtcc agtgacaaat gtaaccaacc ttgctctcct ggatccgaca ttctggcgag
     1681 ggagagagtc agtaaacaca gaatttaaac aggtattttc aaatagcagg taagcgcttg
     1741 aacaaagtga aacaaggtaa tgggatagag agggacaggg ggtggggttg ggtgctgttt
     1801 cagacaaagt agtccatgaa ggcttccctg gggaggtgac attgactcaa aggttagaga
     1861 atgagaaagg ggctgccacc tgaactcgac aaagaacatt ctgaggagag gttgcagcaa
     1921 gggccaaggc cccaggtcga ggacaaactt gtgttccagg aacagcgaaa ggattaattt
     1981 acctgaggac tcaaagctgc tgtcccagag aaaagcaaag gggaccccgc cccctggatg
     2041 actccttgag tgtctgtcaa ctggccacca gagggcagca gtgatccttt ccttcctgca
     2101 agagcagaaa gcggaagctc cacgggccca tgaagagctg cagttttcct gtgtagatgc
     2161 tcaaagctta ttctcgggct ctgggcattt tcaacccttc gagatttgtg gggcaggaaa
     2221 atcccagttt cttaagccta cagagagatg agcaaaaact gcagcatcgg tgattcaggc
     2281 aagaaatcgg catcagtgac aaatactaga agaggggcct ggaaagctca tggagtctct
     2341 gtccctgcaa tctctacagc cataatcttc tttttcttct ggcgataaac aacacagata
     2401 gagcccagcc tgaagggaat aggcaagatg accccccagg gtctcccatg accacatcca
     2461 tgcccaccac agaagtctcc tgtctacaca gaagtattct tccctgagct cccagcagag
     2521 ctggggatgt tagcctatga cttccaagtg tcatctgaca ctgaagatat gaggtgggag
     2581 tcagtaagaa agtctgggga accccttctc cccacccagc tgtgaagtaa gaattgctca
     2641 tcctgggcag tggcatggac ctgacatagg agcaggtggc ctggagcacg cctttgtctc
     2701 tgtgtgcttc atgggggtgg caccctgcgt gcttcatggg ggtggcaccc tgcacgtcac
     2761 acaggctctc ctgggagtcg gtcggactgt ggattggacg tgtggtgcgt gggtgtctat
     2821 gcagcagctt gtgcactgca atggacgtag gaaccattct aaatgtgcac aacaaataat
     2881 aagtgtgtct ttcttcgttt taatcttttg tggtatttcg tttttgaagt tttttttttt
     2941 caatatcc
//
LOCUS       XM_032608411            3003 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromodomain helicase DNA binding protein
            1 like (CHD1L), transcript variant X1, mRNA.
ACCESSION   XM_032608411
VERSION     XM_032608411.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3003
                     /gene="CHD1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 long SRA reads, 13
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741597"
     CDS             33..2729
                     /gene="CHD1L"
                     /codon_start=1
                     /product="chromodomain-helicase-DNA-binding protein 1-like
                     isoform X1"
                     /protein_id="XP_032464302.1"
                     /db_xref="GeneID:116741597"
                     /translation="MEREGAATREGGMPGFLQTLQSESRVEAARVQEQDLRQWGLTGI
                     HLRPYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC
                     PLSVLSNWKEEIERFAPGLSCVTYSGDKEERAHLQQDLRKESHFHVLLTTYEICLKDA
                     LFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLRELYSLLS
                     FVEPDLFSKEQVEDFIQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPKKTEV
                     VIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHPYLFDGVEPE
                     PFEIGGHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYER
                     VDGSVRGEERHLAIKNFGQQPIFIFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQ
                     AAARAHRIGQNKSVKVIRLIGRDTVEEIVCRKAASKLQLTNTIIEGGHFTLGAQKPAA
                     HADLQLSEILKFGLDKLLSSEGSTMDEIDLESILGETKDGQWISGALPTAEERSREQE
                     EGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLHKTLLEKTSQEGRLLRHKGSVLIPGL
                     VEGSTKRKRILSPEELEDRRKKRQEAAAKRKKLLEEKKRSKEEAEHKKKMAWWESNDY
                     QSFCLPSDESEPEDLEDWEDERSAQLDCEDPDSTSIKYVSGDVTHPQAGAEDAVIVHC
                     VDDSGRWGRGGLFTALEKRSAEPRKIYELAGKMKDLSLGGVLLFPIDDKESRSKGQDL
                     LALIVAQHRDRANVLSGIKMAALDEGLKKIFLAAKKKKASVHLPRIGHATEGFNWYGT
                     ERLIRKHLASRGIPTYIYYFPRSKAAILHPQASSSSLGQPVP"
     misc_feature    168..>1658
                     /gene="CHD1L"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional; Region: PLN03142"
                     /db_xref="CDD:215601"
     misc_feature    2181..2633
                     /gene="CHD1L"
                     /note="macrodomain, Poa1p-like family, SNF2 subfamily;
                     Region: Macro_Poa1p-like_SNF2; cd03331"
                     /db_xref="CDD:394880"
     misc_feature    order(2199..2210,2247..2258,2268..2288,2292..2294,
                     2442..2447,2556..2579)
                     /gene="CHD1L"
                     /note="putative ADP-ribose binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:394880"
ORIGIN      
        1 ggcggcgtag ggcggagctt cgcagtggct ggatggagcg tgagggcgct gcgacccgcg
       61 agggcggcat gcccggcttt ctacagactc ttcagagcga gagccgagtc gaggcggcgc
      121 gggtgcagga gcaggacttg cggcagtggg gcctgacagg gatccatcta cgcccttatc
      181 agctggaggg agtcaactgg ctagcccaac gcttccattg tcagaatggc tgcatactgg
      241 gagatgagat gggcttgggt aagacctgcc agactattgc tctcttcatt tacttggcag
      301 gaagattaaa tgatgaagga ccatttctga ttctttgtcc cttgtctgtt ttgagcaact
      361 ggaaagaaga gattgagaga tttgctccag gtctttcctg tgtaacatat tcaggtgaca
      421 aggaggagag agcccaccta cagcaagacc taaggaagga gtcacatttt catgtgctgc
      481 taactaccta tgagatttgc ttgaaagatg cattgtttct aaagtccttc ccttggagtg
      541 ttcttgttgt ggatgaagct cacaggttga aaaaccaaag ctccttgctg cataagacac
      601 tttcagagtt ttcagtcgtc ttcagtctcc tgttgaccgg aactcccatc cagaacagcc
      661 ttcgagagct ctactctctc ctcagttttg tggagcctga tctcttttcc aaggagcagg
      721 tggaagattt cattcagcgt taccaggata ttgagaaaga gtctgagtca gcaagtgaac
      781 tatacaaact cttgcagcca tttctgctga ggcgagtgaa agctgaggta gccacagagc
      841 ttcccaagaa gacggaagta gtgatatacc atggcatgtc agcgctgcag aaaaaatact
      901 acaaggccat tttgatgaaa gacctagacg cgtttgaaaa tgagatggca aagaaagtta
      961 aacttcagaa tgtcttgtcc cagcttcgaa agtgtgtgga tcacccatat ttatttgatg
     1021 gtgtggaacc agagcctttt gaaattggag gtcacctgat agaggccagt gggaaacttc
     1081 accttctgga taagctgctg gcattcctgt attccaaggg ccatcgagtt ttacttttct
     1141 ctcaaatgac ccagatgttg gatattctcc aagactacat ggattataga ggctacagct
     1201 atgagcgtgt ggatggctcc gtgagaggag aagagagaca cctggccatc aagaactttg
     1261 gacagcagcc catctttatt tttctcctga gtaccagggc aggtggagtt ggcatgaact
     1321 taacggcagc agataccgtg atttttgttg atagtgattt caatccgcag aatgacttgc
     1381 aagcagctgc cagggctcac cgaattggcc agaacaagtc cgttaaagtc attcggctga
     1441 ttggccgaga cactgtggaa gaaatagtct gtagaaaagc agcctccaag ctgcagctca
     1501 ccaacaccat catagaaggg ggccatttta ctctgggagc ccagaaacct gctgcgcatg
     1561 ctgacctcca gttgagtgag atactcaaat tcggtttgga taaactgctg tcctctgagg
     1621 ggagcaccat ggatgaaata gacctggagt ctatcctggg agaaacaaaa gatggccagt
     1681 ggatctctgg tgccctgccg acagcagaag aaagaagcag agaacaagag gaaggaaaaa
     1741 accacatgta cttatttgaa ggtaaagatt attctaagga gcctagtaaa gaagacagaa
     1801 aatcatttga gcaactggtg aatcttcaca aaaccctttt ggagaagact agtcaagagg
     1861 gccggttact ccgacataaa ggcagtgttc tcatcccagg ccttgtggag gggtctacca
     1921 aaaggaagcg gattctgagc ccagaagagc tggaggacag gaggaagaaa agacaagaag
     1981 cagcagccaa gagaaagaaa ctattagagg agaagaagag gagcaaggaa gaagcagaac
     2041 ataagaaaaa gatggcttgg tgggagtcca acgattacca gtccttctgc ctgccttccg
     2101 acgagagcga accagaggac ctggaggact gggaagacga acgctctgcc caactggatt
     2161 gtgaggaccc ggactcgacc tccatcaagt atgtaagcgg tgatgtcacc cacccacagg
     2221 ctggggcgga ggatgctgtc atcgtgcact gtgtagatga ctccggccgc tggggcagag
     2281 gtggtttatt cacagctctg gaaaaaagat ctgctgagcc aagaaaaata tatgagctgg
     2341 ctgggaaaat gaaagatttg agtttgggag gtgtcctttt atttcctatt gatgataaag
     2401 agtcaagaag caaagggcaa gatttgttgg ccttgattgt ggcccagcac cgtgatcgtg
     2461 ccaatgtcct gtctggcatt aagatggcag ccctagacga gggcctgaag aagatatttt
     2521 tagcagcaaa gaaaaagaaa gcaagtgtcc atcttccacg cattggacat gccacggaag
     2581 gttttaactg gtatggtact gagcgactta ttcggaaaca cttggcctca agaggcatcc
     2641 caacttacat ctactacttt cctagaagca aggctgccat ccttcatcca caggcctcat
     2701 cttcctcctt aggacagccg gtgccttaac aatcggctca gcatcagatc cagccttcag
     2761 caaccagcta agatgtttgc tcaaagctac tgtaatagaa tatttcaaaa aggaatcagg
     2821 atctggtggg cctctgaggt actctgtttt ctgaattcga attttgttct cttggatgtg
     2881 gtactgatgt ggtgcgtgta atacagggat gcacgagata tttgggaaaa tcctttggca
     2941 gcttgccagg gccccagttt gcacagctat ttgcataata ataaatacat tttctatctc
     3001 taa
//
LOCUS       XM_032608421            2888 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromodomain helicase DNA binding protein
            1 like (CHD1L), transcript variant X2, mRNA.
ACCESSION   XM_032608421
VERSION     XM_032608421.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2888
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2888
                     /gene="CHD1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741597"
     CDS             33..2597
                     /gene="CHD1L"
                     /codon_start=1
                     /product="chromodomain-helicase-DNA-binding protein 1-like
                     isoform X2"
                     /protein_id="XP_032464312.1"
                     /db_xref="GeneID:116741597"
                     /translation="MEREGAATREGGMPGFLQTLQSESRVEAARVQEQDLRQWGLTGI
                     HLRPYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC
                     PLSVLSNWKEEIERFAPGLSCVTYSGDKEERAHLQQDLRKESHFHVLLTTYEICLKDA
                     LFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLRELYSLLS
                     FVEPDLFSKEQVEDFIQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPKKTEV
                     VIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHPYLFDGVEPE
                     PFEIGGHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYER
                     VDGSVRGEERHLAIKNFGQQPIFIFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQ
                     AAARAHRIGQNKSVKVIRLIGRDTVEEIVCRKAASKLQLTNTIIEGGHFTLGAQKPAA
                     HADLQLSEILKFGLDKLLSSEGSTMDEIDLESILGETKDGQWISGALPTAEERSREQE
                     EGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLHKTLLEKTSQEGRLLRHKGSVLIPGL
                     VEGSTKRKRILSPEELEDRRKKRQEAAAKRKKLLEEKKRSKEEAEHKKKMAWWESNDY
                     QSFCLPSDESEPEDLEDWEDERSAQLDCEDPDSTSIKYVSGDVTHPQAGAEDAVIVHC
                     VDDSGRWGRGGLFTALEKRSAEPRKIYELAGKMKDLSLGGVLLFPIDDKESRSKGQDL
                     QVSIFHALDMPRKVLTGMVLSDLFGNTWPQEASQLTSTTFLEARLPSFIHRPHLPP"
     misc_feature    168..>1658
                     /gene="CHD1L"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional; Region: PLN03142"
                     /db_xref="CDD:215601"
     misc_feature    2181..>2495
                     /gene="CHD1L"
                     /note="macrodomain superfamily; Region: Macro_SF; cl00019"
                     /db_xref="CDD:469581"
ORIGIN      
        1 ggcggcgtag ggcggagctt cgcagtggct ggatggagcg tgagggcgct gcgacccgcg
       61 agggcggcat gcccggcttt ctacagactc ttcagagcga gagccgagtc gaggcggcgc
      121 gggtgcagga gcaggacttg cggcagtggg gcctgacagg gatccatcta cgcccttatc
      181 agctggaggg agtcaactgg ctagcccaac gcttccattg tcagaatggc tgcatactgg
      241 gagatgagat gggcttgggt aagacctgcc agactattgc tctcttcatt tacttggcag
      301 gaagattaaa tgatgaagga ccatttctga ttctttgtcc cttgtctgtt ttgagcaact
      361 ggaaagaaga gattgagaga tttgctccag gtctttcctg tgtaacatat tcaggtgaca
      421 aggaggagag agcccaccta cagcaagacc taaggaagga gtcacatttt catgtgctgc
      481 taactaccta tgagatttgc ttgaaagatg cattgtttct aaagtccttc ccttggagtg
      541 ttcttgttgt ggatgaagct cacaggttga aaaaccaaag ctccttgctg cataagacac
      601 tttcagagtt ttcagtcgtc ttcagtctcc tgttgaccgg aactcccatc cagaacagcc
      661 ttcgagagct ctactctctc ctcagttttg tggagcctga tctcttttcc aaggagcagg
      721 tggaagattt cattcagcgt taccaggata ttgagaaaga gtctgagtca gcaagtgaac
      781 tatacaaact cttgcagcca tttctgctga ggcgagtgaa agctgaggta gccacagagc
      841 ttcccaagaa gacggaagta gtgatatacc atggcatgtc agcgctgcag aaaaaatact
      901 acaaggccat tttgatgaaa gacctagacg cgtttgaaaa tgagatggca aagaaagtta
      961 aacttcagaa tgtcttgtcc cagcttcgaa agtgtgtgga tcacccatat ttatttgatg
     1021 gtgtggaacc agagcctttt gaaattggag gtcacctgat agaggccagt gggaaacttc
     1081 accttctgga taagctgctg gcattcctgt attccaaggg ccatcgagtt ttacttttct
     1141 ctcaaatgac ccagatgttg gatattctcc aagactacat ggattataga ggctacagct
     1201 atgagcgtgt ggatggctcc gtgagaggag aagagagaca cctggccatc aagaactttg
     1261 gacagcagcc catctttatt tttctcctga gtaccagggc aggtggagtt ggcatgaact
     1321 taacggcagc agataccgtg atttttgttg atagtgattt caatccgcag aatgacttgc
     1381 aagcagctgc cagggctcac cgaattggcc agaacaagtc cgttaaagtc attcggctga
     1441 ttggccgaga cactgtggaa gaaatagtct gtagaaaagc agcctccaag ctgcagctca
     1501 ccaacaccat catagaaggg ggccatttta ctctgggagc ccagaaacct gctgcgcatg
     1561 ctgacctcca gttgagtgag atactcaaat tcggtttgga taaactgctg tcctctgagg
     1621 ggagcaccat ggatgaaata gacctggagt ctatcctggg agaaacaaaa gatggccagt
     1681 ggatctctgg tgccctgccg acagcagaag aaagaagcag agaacaagag gaaggaaaaa
     1741 accacatgta cttatttgaa ggtaaagatt attctaagga gcctagtaaa gaagacagaa
     1801 aatcatttga gcaactggtg aatcttcaca aaaccctttt ggagaagact agtcaagagg
     1861 gccggttact ccgacataaa ggcagtgttc tcatcccagg ccttgtggag gggtctacca
     1921 aaaggaagcg gattctgagc ccagaagagc tggaggacag gaggaagaaa agacaagaag
     1981 cagcagccaa gagaaagaaa ctattagagg agaagaagag gagcaaggaa gaagcagaac
     2041 ataagaaaaa gatggcttgg tgggagtcca acgattacca gtccttctgc ctgccttccg
     2101 acgagagcga accagaggac ctggaggact gggaagacga acgctctgcc caactggatt
     2161 gtgaggaccc ggactcgacc tccatcaagt atgtaagcgg tgatgtcacc cacccacagg
     2221 ctggggcgga ggatgctgtc atcgtgcact gtgtagatga ctccggccgc tggggcagag
     2281 gtggtttatt cacagctctg gaaaaaagat ctgctgagcc aagaaaaata tatgagctgg
     2341 ctgggaaaat gaaagatttg agtttgggag gtgtcctttt atttcctatt gatgataaag
     2401 agtcaagaag caaagggcaa gatttgcaag tgtccatctt ccacgcattg gacatgccac
     2461 ggaaggtttt aactggtatg gtactgagcg acttattcgg aaacacttgg cctcaagagg
     2521 catcccaact tacatctact actttcctag aagcaaggct gccatccttc atccacaggc
     2581 ctcatcttcc tccttaggac agccggtgcc ttaacaatcg gctcagcatc agatccagcc
     2641 ttcagcaacc agctaagatg tttgctcaaa gctactgtaa tagaatattt caaaaaggaa
     2701 tcaggatctg gtgggcctct gaggtactct gttttctgaa ttcgaatttt gttctcttgg
     2761 atgtggtact gatgtggtgc gtgtaataca gggatgcacg agatatttgg gaaaatcctt
     2821 tggcagcttg ccagggcccc agtttgcaca gctatttgca taataataaa tacattttct
     2881 atctctaa
//
LOCUS       XM_032608432            2826 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromodomain helicase DNA binding protein
            1 like (CHD1L), transcript variant X3, mRNA.
ACCESSION   XM_032608432
VERSION     XM_032608432.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2826
                     /gene="CHD1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 2 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741597"
     CDS             58..2592
                     /gene="CHD1L"
                     /codon_start=1
                     /product="chromodomain-helicase-DNA-binding protein 1-like
                     isoform X3"
                     /protein_id="XP_032464323.1"
                     /db_xref="GeneID:116741597"
                     /translation="MEREGAATREGGMPGFLQTLQSESRVEAARVQEQDLRQWGLTGI
                     HLRPYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC
                     PLSVLSNWKEEIERFAPGLSCVTYSGDKEERAHLQQDLRKESHFHVLLTTYEICLKDA
                     LFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLRELYSLLS
                     FVEPDLFSKEQVEDFIQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPKKTEV
                     VIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHPYLFDGVEPE
                     PFEIGGHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYER
                     VDGSVRGEERHLAIKNFGQQPIFIFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQ
                     AAARAHRIGQNKSVKVIRLIGRDTVEEIVCRKAASKLQLTNTIIEGGHFTLGAQKPAA
                     HADLQLSEILKFGLDKLLSSEGSTMDEIDLESILGETKDGQWISGALPTAEERSREQE
                     EGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLHKTLLEKTSQEGRLLRHKGSVLIPGL
                     VEGSTKRKRILSPEELEDRRKKRQEAAAKRKKLLEEKKRSKEEAEHKKKMAWWESNDY
                     QSFCLPSDESEPEDLEDWEDERSAQLDCEDPDSTSIKYVSGDVTHPQAGAEDAVIVHC
                     VDDSGRWGRGGLFTALEKRSAEPRKIYELAGKMKDLSLGGVLLFPIDDKESRSKGQDL
                     LALIVAQHRDRANVLSGIKMAALDEGLKKIFLAAKKKKDEEVKDQR"
     misc_feature    193..>1683
                     /gene="CHD1L"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional; Region: PLN03142"
                     /db_xref="CDD:215601"
     misc_feature    2206..>2553
                     /gene="CHD1L"
                     /note="macrodomain, Poa1p-like family, SNF2 subfamily;
                     Region: Macro_Poa1p-like_SNF2; cd03331"
                     /db_xref="CDD:394880"
ORIGIN      
        1 cgaacgtcgg gaaggaagcg cgcggggcgg cgtagggcgg agcttcgcag tggctggatg
       61 gagcgtgagg gcgctgcgac ccgcgagggc ggcatgcccg gctttctaca gactcttcag
      121 agcgagagcc gagtcgaggc ggcgcgggtg caggagcagg acttgcggca gtggggcctg
      181 acagggatcc atctacgccc ttatcagctg gagggagtca actggctagc ccaacgcttc
      241 cattgtcaga atggctgcat actgggagat gagatgggct tgggtaagac ctgccagact
      301 attgctctct tcatttactt ggcaggaaga ttaaatgatg aaggaccatt tctgattctt
      361 tgtcccttgt ctgttttgag caactggaaa gaagagattg agagatttgc tccaggtctt
      421 tcctgtgtaa catattcagg tgacaaggag gagagagccc acctacagca agacctaagg
      481 aaggagtcac attttcatgt gctgctaact acctatgaga tttgcttgaa agatgcattg
      541 tttctaaagt ccttcccttg gagtgttctt gttgtggatg aagctcacag gttgaaaaac
      601 caaagctcct tgctgcataa gacactttca gagttttcag tcgtcttcag tctcctgttg
      661 accggaactc ccatccagaa cagccttcga gagctctact ctctcctcag ttttgtggag
      721 cctgatctct tttccaagga gcaggtggaa gatttcattc agcgttacca ggatattgag
      781 aaagagtctg agtcagcaag tgaactatac aaactcttgc agccatttct gctgaggcga
      841 gtgaaagctg aggtagccac agagcttccc aagaagacgg aagtagtgat ataccatggc
      901 atgtcagcgc tgcagaaaaa atactacaag gccattttga tgaaagacct agacgcgttt
      961 gaaaatgaga tggcaaagaa agttaaactt cagaatgtct tgtcccagct tcgaaagtgt
     1021 gtggatcacc catatttatt tgatggtgtg gaaccagagc cttttgaaat tggaggtcac
     1081 ctgatagagg ccagtgggaa acttcacctt ctggataagc tgctggcatt cctgtattcc
     1141 aagggccatc gagttttact tttctctcaa atgacccaga tgttggatat tctccaagac
     1201 tacatggatt atagaggcta cagctatgag cgtgtggatg gctccgtgag aggagaagag
     1261 agacacctgg ccatcaagaa ctttggacag cagcccatct ttatttttct cctgagtacc
     1321 agggcaggtg gagttggcat gaacttaacg gcagcagata ccgtgatttt tgttgatagt
     1381 gatttcaatc cgcagaatga cttgcaagca gctgccaggg ctcaccgaat tggccagaac
     1441 aagtccgtta aagtcattcg gctgattggc cgagacactg tggaagaaat agtctgtaga
     1501 aaagcagcct ccaagctgca gctcaccaac accatcatag aagggggcca ttttactctg
     1561 ggagcccaga aacctgctgc gcatgctgac ctccagttga gtgagatact caaattcggt
     1621 ttggataaac tgctgtcctc tgaggggagc accatggatg aaatagacct ggagtctatc
     1681 ctgggagaaa caaaagatgg ccagtggatc tctggtgccc tgccgacagc agaagaaaga
     1741 agcagagaac aagaggaagg aaaaaaccac atgtacttat ttgaaggtaa agattattct
     1801 aaggagccta gtaaagaaga cagaaaatca tttgagcaac tggtgaatct tcacaaaacc
     1861 cttttggaga agactagtca agagggccgg ttactccgac ataaaggcag tgttctcatc
     1921 ccaggccttg tggaggggtc taccaaaagg aagcggattc tgagcccaga agagctggag
     1981 gacaggagga agaaaagaca agaagcagca gccaagagaa agaaactatt agaggagaag
     2041 aagaggagca aggaagaagc agaacataag aaaaagatgg cttggtggga gtccaacgat
     2101 taccagtcct tctgcctgcc ttccgacgag agcgaaccag aggacctgga ggactgggaa
     2161 gacgaacgct ctgcccaact ggattgtgag gacccggact cgacctccat caagtatgta
     2221 agcggtgatg tcacccaccc acaggctggg gcggaggatg ctgtcatcgt gcactgtgta
     2281 gatgactccg gccgctgggg cagaggtggt ttattcacag ctctggaaaa aagatctgct
     2341 gagccaagaa aaatatatga gctggctggg aaaatgaaag atttgagttt gggaggtgtc
     2401 cttttatttc ctattgatga taaagagtca agaagcaaag ggcaagattt gttggccttg
     2461 attgtggccc agcaccgtga tcgtgccaat gtcctgtctg gcattaagat ggcagcccta
     2521 gacgagggcc tgaagaagat atttttagca gcaaagaaaa agaaagatga ggaagtaaag
     2581 gaccagagat gaagtaaact ggtcataatg cagttgtgaa acgcctcttg gagagtccca
     2641 gtccgcatta gcagacagtt ctctgccaaa aacccgagtt cagttttgtt tctaagccca
     2701 gtgtgctgtc tcacagtttc ttgaactgat tgacttttta aaaataaatt tattttatta
     2761 tttttggctg cattgggttt tcattgctgt gcacgggctt tctctagttg cagcgagtgg
     2821 gggcta
//
LOCUS       XR_004346208            2999 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromodomain helicase DNA binding protein
            1 like (CHD1L), transcript variant X4, misc_RNA.
ACCESSION   XR_004346208
VERSION     XR_004346208.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2999
                     /gene="CHD1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116741597"
     misc_RNA        1..2999
                     /gene="CHD1L"
                     /product="chromodomain helicase DNA binding protein 1
                     like, transcript variant X4"
                     /db_xref="GeneID:116741597"
ORIGIN      
        1 ggcggcgtag ggcggagctt cgcagtggct ggatggagcg tgagggcgct gcgacccgcg
       61 agggcggcat gcccggcttt ctacagactc ttcagagcga gagccgagtc gaggcggcgc
      121 gggtgcagga gcaggacttg cggcagtggg gcctgacagg gatccatcta cgcccttatc
      181 agctggaggg agtcaactgg ctagcccaac gcttccattg tcagaatggc tgcatactgg
      241 gagatgagat gggcttgggt aagacctgcc agactattgc tctcttcatt tacttggcag
      301 gaagattaaa tgatgaagga ccatttctga ttctttgtcc cttgtctgtt ttgagcaact
      361 ggaaagaaga gattgagaga tttgctccag gtctttcctg tgtaacatat tcaggtgaca
      421 aggaggagag agcccaccta cagcaagacc taaggaagga gtcacatttt catgtgctgc
      481 taactaccta tgagatttgc ttgaaagatg cattgtttct aaagtccttc ccttggagtg
      541 ttcttgttgt ggatgaagct cacaggttga aaaaccaaag ctccttgctg cataagacac
      601 tttcagagtt ttcagtcgtc ttcagtctcc tgttgaccgg aactcccatc cagaacagcc
      661 ttcgagagct ctactctctc ctcagttttg tggagcctga tctcttttcc aaggagcagg
      721 tggaagattt cattcagcgt taccaggata ttgagaaaga gtctgagtca gcaagtgaac
      781 tatacaaact cttgcagcca tttctgctga ggcgagtgaa agctgaggta gccacagagc
      841 ttcccaagaa gacggaagta gtgatatacc atggcatgtc agcgctgcag aaaaaatact
      901 acaaggccat tttgatgaaa gacctagacg cgtttgaaaa tgagatggca aagaaagtta
      961 aacttcagaa tgtcttgtcc cagcttcgaa agtgtgtgga tcacccatat ttatttgatg
     1021 gtgtggaacc agagcctttt gaaattggag gtcacctgat agaggccagt gggaaacttc
     1081 accttctgga taagctgctg gcattcctgt attccaaggg ccatcgagtt ttacttttct
     1141 ctcaaatgac ccagatgttg gatattctcc aagactacat ggattataga ggctacagct
     1201 atgagcgtgt ggatggctcc gtgagaggag aagagagaca cctggccatc aagaactttg
     1261 gacagcagcc catctttatt tttctcctga gtaccagggc aggtggagtt ggcatgaact
     1321 taacggcagc agataccgtg atttttgttg atagtgattt caatccgcag aatgacttgc
     1381 aagcagctgc cagggctcac cgaattggcc agaacaagtc cgttaaagtc attcggctga
     1441 ttggccgaga cactgtggaa gaaatagtct gtagaaaagc agcctccaag ctgcagctca
     1501 ccaacaccat catagaaggg ggccatttta ctctgggagc ccagaaacct gctgcgcatg
     1561 ctgacctcca gttgagtgag atactcaaat tcggtttgga taaactgctg tcctctgagg
     1621 ggagcaccat ggatgaaata gacctggagt ctatcctggg agaaacaaaa gatggccagt
     1681 ggatctctgg tgccctgccg acagcagaag aaagaagcag agaacaagag gaaggaaaaa
     1741 accacatgta cttatttgaa ggtaaagatt attctaagga gcctagtaaa gaagacagaa
     1801 aatcatttga gcaactggtg aatcttcaca aaaccctttt ggagaagact agtcaagagg
     1861 gccggttact ccgacataaa ggcagtgttc tcatcccagg ccttgtggag gggtctacca
     1921 aaaggaagcg gattctgagc ccagaagagc tggaggacag gaggaagaaa agacaagaag
     1981 cagcagccaa gagaaagaaa ctattagagg agaagaagag gagcaaggaa gaagcagaac
     2041 ataagaaaaa gatggcttgg tgggagtcca acgattacca gtccttctgc ctgccttccg
     2101 acgagagcga accagaggac ctggaggact gggaagacga acgctctgcc caactggatt
     2161 gtgaggaccc ggactcgacc tccatcaagt atgtaagcgg tgatgtcacc cacccacagg
     2221 ctggggcgga ggatgctgtc atcgtgcact gtatgactcc ggccgctggg gcagaggtgg
     2281 tttattcaca gctctggaaa aaagatctgc tgagccaaga aaaatatatg agctggctgg
     2341 gaaaatgaaa gatttgagtt tgggaggtgt ccttttattt cctattgatg ataaagagtc
     2401 aagaagcaaa gggcaagatt tgttggcctt gattgtggcc cagcaccgtg atcgtgccaa
     2461 tgtcctgtct ggcattaaga tggcagccct agacgagggc ctgaagaaga tatttttagc
     2521 agcaaagaaa aagaaagcaa gtgtccatct tccacgcatt ggacatgcca cggaaggttt
     2581 taactggtat ggtactgagc gacttattcg gaaacacttg gcctcaagag gcatcccaac
     2641 ttacatctac tactttccta gaagcaaggc tgccatcctt catccacagg cctcatcttc
     2701 ctccttagga cagccggtgc cttaacaatc ggctcagcat cagatccagc cttcagcaac
     2761 cagctaagat gtttgctcaa agctactgta atagaatatt tcaaaaagga atcaggatct
     2821 ggtgggcctc tgaggtactc tgttttctga attcgaattt tgttctcttg gatgtggtac
     2881 tgatgtggtg cgtgtaatac agggatgcac gagatatttg ggaaaatcct ttggcagctt
     2941 gccagggccc cagtttgcac agctatttgc ataataataa atacattttc tatctctaa
//
LOCUS       XR_004346210            2305 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromodomain helicase DNA binding protein
            1 like (CHD1L), transcript variant X5, misc_RNA.
ACCESSION   XR_004346210
VERSION     XR_004346210.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2305
                     /gene="CHD1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741597"
     misc_RNA        1..2305
                     /gene="CHD1L"
                     /product="chromodomain helicase DNA binding protein 1
                     like, transcript variant X5"
                     /db_xref="GeneID:116741597"
ORIGIN      
        1 ggcggcgtag ggcggagctt cgcagtggct ggatggagcg tgagggcgct gcgacccgcg
       61 agggcggcat gcccggcttt ctacagactc ttcagagcga gagccgagtc gaggcggcgc
      121 gggtgcagga gcaggacttg cggcagtggg gcctgacagg gatccatcta cgcccttatc
      181 agctggaggg agtcaactgg ctagcccaac gcttccattg tcagaatggc tgcatactgg
      241 gagatgagat gggcttgggt aagacctgcc agactattgc tctcttcatt tacttggcag
      301 gaagattaaa tgatgaagga ccatttctga ttctttgtcc cttgtctgtt ttgagcaact
      361 ggaaagaaga gattgagaga tttgctccag gtctttcctg tgtaacatat tcaggtgaca
      421 aggaggagag agcccaccta cagcaagacc taaggaagga gtcacatttt catgtgctgc
      481 taactaccta tgagatttgc ttgaaagatg cattgtttct aaagtccttc ccttggagtg
      541 ttcttgttgt ggatgaagct cacaggttga aaaaccaaag ctccttgctg cataagacac
      601 tttcagagtt ttcagtcgtc ttcagtctcc tgttgaccgg aactcccatc cagaacagcc
      661 ttcgagagct ctactctctc ctcagttttg tggagcctga tctcttttcc aaggagcagg
      721 tggaagattt cattcagcgt taccaggata ttgagaaaga gtctgagtca gcaagtgaac
      781 tatacaaact cttgcagcca tttctgctga ggcgagtgaa agctgaggta gccacagagc
      841 ttcccaagaa gacggaagta gtgatatacc atggcatgtc agcgctgcag aaaaaatact
      901 acaaggccat tttgatgaaa gacctagacg cgtttgaaaa tgagatggca aagaaagtta
      961 aacttcagaa tgtcttgtcc cagcttcgaa agtgtgtgga tcacccatat ttatttgatg
     1021 gtgtggaacc agagcctttt gaaattggag gtcacctgat agaggccagt gggaaacttc
     1081 accttctgga taagctgctg gcattcctgt attccaaggg ccatcgagtt ttacttttct
     1141 ctcaaatgac ccagatgttg gatattctcc aagactacat ggattataga ggctacagct
     1201 atgagcgtgt ggatggctcc gtgagaggag aagagagaca cctggccatc aagaactttg
     1261 gacagcagcc catctttatt tttctcctga gtaccagggc aggtggagtt ggcatgaact
     1321 taacggcagc agataccgtg atttttgttg atagtgattt caatccgcag aatgacttgc
     1381 aagcagctgc cagggctcac cgaattggcc agaacaagtc cgttaaagtc attcggctga
     1441 ttggccgaga cactgtggaa gaaatagtct gtagaaaagc agcctccaag ctgcagctca
     1501 ccaacaccat catagaaggg ggccatttta ctctgggagc ccagaaacct gctgcgcatg
     1561 ctgacctcca gttgagtgag atactcaaat tcggtttgga taaactgctg tcctctgagg
     1621 ggagcaccat ggatgaaata gacctggagt ctatcctggg agaaacaaaa gatggccagt
     1681 ggatctctgg tgccctgccg acagcagaag aaagaagcag agaacaagag gaaggaaaaa
     1741 accacatgta cttatttgaa ggtaaagatt attctaagga gcctagtaaa gaagacagaa
     1801 aatcatttga gcaactggtg aatcttcaca aaaccctttt ggagaagact agtcaagagg
     1861 gccggttact ccgacataaa ggcagtgttc tcatcccagg ccttgtggag gggtctacca
     1921 aaaggaagcg gattctgagc ccagaagagc tggaggacag gaggaagaaa agacaagaag
     1981 cagcagccaa gagaaagaaa ctattagagg agaagaagag gagcaaggaa gaagcagaac
     2041 ataagaaaaa gatggcttgg tgggagtcca acgattacca gtccttctgc ctgccttccg
     2101 acgagagcga accagaggac ctggaggact gggaagacga acgctctgcc caactggatt
     2161 gtgaggaccc ggactcgacc tccatcaaat gactccggcc gctggggcag aggtggttta
     2221 ttcacagctc tggaaaaaag atctgctgag ccaagaaaaa tatatgagct ggctgggaaa
     2281 atgaaagatt tgagtttggg aggtg
//
LOCUS       XM_032608447            2983 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromodomain helicase DNA binding protein
            1 like (CHD1L), transcript variant X6, mRNA.
ACCESSION   XM_032608447
VERSION     XM_032608447.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2983
                     /gene="CHD1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741597"
     CDS             856..2709
                     /gene="CHD1L"
                     /codon_start=1
                     /product="chromodomain-helicase-DNA-binding protein 1-like
                     isoform X4"
                     /protein_id="XP_032464338.1"
                     /db_xref="GeneID:116741597"
                     /translation="MSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHP
                     YLFDGVEPEPFEIGGHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYM
                     DYRGYSYERVDGSVRGEERHLAIKNFGQQPIFIFLLSTRAGGVGMNLTAADTVIFVDS
                     DFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVCRKAASKLQLTNTIIEGGHF
                     TLGAQKPAAHADLQLSEILKFGLDKLLSSEGSTMDEIDLESILGETKDGQWISGALPT
                     AEERSREQEEGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLHKTLLEKTSQEGRLLRH
                     KGSVLIPGLVEGSTKRKRILSPEELEDRRKKRQEAAAKRKKLLEEKKRSKEEAEHKKK
                     MAWWESNDYQSFCLPSDESEPEDLEDWEDERSAQLDCEDPDSTSIKYVSGDVTHPQAG
                     AEDAVIVHCVDDSGRWGRGGLFTALEKRSAEPRKIYELAGKMKDLSLGGVLLFPIDDK
                     ESRSKGQDLLALIVAQHRDRANVLSGIKMAALDEGLKKIFLAAKKKKASVHLPRIGHA
                     TEGFNWYGTERLIRKHLASRGIPTYIYYFPRSKAAILHPQASSSSLGQPVP"
     misc_feature    <856..>1638
                     /gene="CHD1L"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional; Region: PLN03142"
                     /db_xref="CDD:215601"
     misc_feature    2161..2613
                     /gene="CHD1L"
                     /note="macrodomain, Poa1p-like family, SNF2 subfamily;
                     Region: Macro_Poa1p-like_SNF2; cd03331"
                     /db_xref="CDD:394880"
     misc_feature    order(2179..2190,2227..2238,2248..2268,2272..2274,
                     2422..2427,2536..2559)
                     /gene="CHD1L"
                     /note="putative ADP-ribose binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:394880"
ORIGIN      
        1 ggagcttcgc agtggctgga tggagcgtga gggcgctgcg acccgcgagg gcggcatgcc
       61 cggctttcta cagactcttc agagcgagag ccgagtcgag gcggcgcggg tgcaggagca
      121 ggacttgcgg cagtggggcc tgacagggat ccatctacgc ccttatcagc tggagggagt
      181 caactggcta gcccaacgct tccattgtca gaatggctgc atactgggag atgagatggg
      241 cttgggtaag acctgccaga ctattgctct cttcatttac ttggcaggaa gattaaatga
      301 tgaaggacca tttctgattc tttgtccctt gtctgttttg agcaactgga aagaagagat
      361 tgagagattt gctccaggtc tttcctgtgt aacatattca ggtgacaagg aggagagagc
      421 ccacctacag caagacctaa ggaaggagtc acattttcat gtgctgctaa ctacctatga
      481 gatttgcttg aaagatgcat tgtttctaaa gtccttccct tggagtgttc ttgttgtgga
      541 tgaagctcac aggttgaaaa accaaagctc cttgctgcat aagacacttt cagagtcgtc
      601 ttcagtctcc tgttgaccgg aactcccatc cagaacagcc ttcgagagct ctactctctc
      661 ctcagttttg tggagcctga tctcttttcc aaggagcagg tggaagattt cattcagcgt
      721 taccaggata ttgagaaaga gtctgagtca gcaagtgaac tatacaaact cttgcagcca
      781 tttctgctga ggcgagtgaa agctgaggta gccacagagc ttcccaagaa gacggaagta
      841 gtgatatacc atggcatgtc agcgctgcag aaaaaatact acaaggccat tttgatgaaa
      901 gacctagacg cgtttgaaaa tgagatggca aagaaagtta aacttcagaa tgtcttgtcc
      961 cagcttcgaa agtgtgtgga tcacccatat ttatttgatg gtgtggaacc agagcctttt
     1021 gaaattggag gtcacctgat agaggccagt gggaaacttc accttctgga taagctgctg
     1081 gcattcctgt attccaaggg ccatcgagtt ttacttttct ctcaaatgac ccagatgttg
     1141 gatattctcc aagactacat ggattataga ggctacagct atgagcgtgt ggatggctcc
     1201 gtgagaggag aagagagaca cctggccatc aagaactttg gacagcagcc catctttatt
     1261 tttctcctga gtaccagggc aggtggagtt ggcatgaact taacggcagc agataccgtg
     1321 atttttgttg atagtgattt caatccgcag aatgacttgc aagcagctgc cagggctcac
     1381 cgaattggcc agaacaagtc cgttaaagtc attcggctga ttggccgaga cactgtggaa
     1441 gaaatagtct gtagaaaagc agcctccaag ctgcagctca ccaacaccat catagaaggg
     1501 ggccatttta ctctgggagc ccagaaacct gctgcgcatg ctgacctcca gttgagtgag
     1561 atactcaaat tcggtttgga taaactgctg tcctctgagg ggagcaccat ggatgaaata
     1621 gacctggagt ctatcctggg agaaacaaaa gatggccagt ggatctctgg tgccctgccg
     1681 acagcagaag aaagaagcag agaacaagag gaaggaaaaa accacatgta cttatttgaa
     1741 ggtaaagatt attctaagga gcctagtaaa gaagacagaa aatcatttga gcaactggtg
     1801 aatcttcaca aaaccctttt ggagaagact agtcaagagg gccggttact ccgacataaa
     1861 ggcagtgttc tcatcccagg ccttgtggag gggtctacca aaaggaagcg gattctgagc
     1921 ccagaagagc tggaggacag gaggaagaaa agacaagaag cagcagccaa gagaaagaaa
     1981 ctattagagg agaagaagag gagcaaggaa gaagcagaac ataagaaaaa gatggcttgg
     2041 tgggagtcca acgattacca gtccttctgc ctgccttccg acgagagcga accagaggac
     2101 ctggaggact gggaagacga acgctctgcc caactggatt gtgaggaccc ggactcgacc
     2161 tccatcaagt atgtaagcgg tgatgtcacc cacccacagg ctggggcgga ggatgctgtc
     2221 atcgtgcact gtgtagatga ctccggccgc tggggcagag gtggtttatt cacagctctg
     2281 gaaaaaagat ctgctgagcc aagaaaaata tatgagctgg ctgggaaaat gaaagatttg
     2341 agtttgggag gtgtcctttt atttcctatt gatgataaag agtcaagaag caaagggcaa
     2401 gatttgttgg ccttgattgt ggcccagcac cgtgatcgtg ccaatgtcct gtctggcatt
     2461 aagatggcag ccctagacga gggcctgaag aagatatttt tagcagcaaa gaaaaagaaa
     2521 gcaagtgtcc atcttccacg cattggacat gccacggaag gttttaactg gtatggtact
     2581 gagcgactta ttcggaaaca cttggcctca agaggcatcc caacttacat ctactacttt
     2641 cctagaagca aggctgccat ccttcatcca caggcctcat cttcctcctt aggacagccg
     2701 gtgccttaac aatcggctca gcatcagatc cagccttcag caaccagcta agatgtttgc
     2761 tcaaagctac tgtaatagaa tatttcaaaa aggaatcagg atctggtggg cctctgaggt
     2821 actctgtttt ctgaattcga attttgttct cttggatgtg gtactgatgt ggtgcgtgta
     2881 atacagggat gcacgagata tttgggaaaa tcctttggca gcttgccagg gccccagttt
     2941 gcacagctat ttgcataata ataaatacat tttctatctc taa
//
LOCUS       XM_032608454            6691 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromodomain helicase DNA binding protein
            1 like (CHD1L), transcript variant X7, mRNA.
ACCESSION   XM_032608454
VERSION     XM_032608454.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6691
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6691
                     /gene="CHD1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 4 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741597"
     CDS             4564..6417
                     /gene="CHD1L"
                     /codon_start=1
                     /product="chromodomain-helicase-DNA-binding protein 1-like
                     isoform X4"
                     /protein_id="XP_032464345.1"
                     /db_xref="GeneID:116741597"
                     /translation="MSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHP
                     YLFDGVEPEPFEIGGHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYM
                     DYRGYSYERVDGSVRGEERHLAIKNFGQQPIFIFLLSTRAGGVGMNLTAADTVIFVDS
                     DFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVCRKAASKLQLTNTIIEGGHF
                     TLGAQKPAAHADLQLSEILKFGLDKLLSSEGSTMDEIDLESILGETKDGQWISGALPT
                     AEERSREQEEGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLHKTLLEKTSQEGRLLRH
                     KGSVLIPGLVEGSTKRKRILSPEELEDRRKKRQEAAAKRKKLLEEKKRSKEEAEHKKK
                     MAWWESNDYQSFCLPSDESEPEDLEDWEDERSAQLDCEDPDSTSIKYVSGDVTHPQAG
                     AEDAVIVHCVDDSGRWGRGGLFTALEKRSAEPRKIYELAGKMKDLSLGGVLLFPIDDK
                     ESRSKGQDLLALIVAQHRDRANVLSGIKMAALDEGLKKIFLAAKKKKASVHLPRIGHA
                     TEGFNWYGTERLIRKHLASRGIPTYIYYFPRSKAAILHPQASSSSLGQPVP"
     misc_feature    <4564..>5346
                     /gene="CHD1L"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional; Region: PLN03142"
                     /db_xref="CDD:215601"
     misc_feature    5869..6321
                     /gene="CHD1L"
                     /note="macrodomain, Poa1p-like family, SNF2 subfamily;
                     Region: Macro_Poa1p-like_SNF2; cd03331"
                     /db_xref="CDD:394880"
     misc_feature    order(5887..5898,5935..5946,5956..5976,5980..5982,
                     6130..6135,6244..6267)
                     /gene="CHD1L"
                     /note="putative ADP-ribose binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:394880"
ORIGIN      
        1 ggagcttcgc agtggctgga tggagcgtga gggcgctgcg acccgcgagg gcggcatgcc
       61 cggctttcta cagactcttc agagcgagag ccgagtcgag gcggcgcggg tgcaggagca
      121 ggacttgcgg cagtggggcc tgacagggat ccatctacgc ccttatcagc tggagggagt
      181 caactggcta gcccaacgct tccattgtca gaatggctgc atactgggag atgagatggg
      241 cttgggtaag acctgccaga ctattgctct cttcatttac ttggcaggaa gattaaatga
      301 tgaaggacca tttctgattc tttgtccctt gtctgttttg agcaactgga aagaagagat
      361 tgagagattt gctccaggtc tttcctgtgt aacatattca ggtgacaagg aggagagagc
      421 ccacctacag caagacctaa ggaaggagtc acattttcat gtgctgctaa ctacctatga
      481 gatttgcttg aaagatgcat tgtttctaaa gtccttccct tggagtgttc ttgttgtgga
      541 tgaagctcac aggttgaaaa accaaagctc cttgctgcat aagacacttt cagaggtaaa
      601 ctcccaggat actcttagct tttatataac tcccttttaa aaaatattag tttagtcctg
      661 tataaagcca attcagttga aatatttttt ttcagtgaga tttctgcagg gctcagtgaa
      721 catttatggt gacaagtagt acttaatatg gcttaacttc ttcctcttgt cttttacaca
      781 ggaggtgatg tttactaaaa tctggttatc aaatgagtaa gagtctaccc caggaaaata
      841 cattgtattt ttggaaatgt ttcaacttgt cttttttttt tttttttttt ttgcggtacg
      901 cgggcctctc cctgttgtgg cctctcctgt tgcggagcac gggctctgga tgcgcaggct
      961 cagcggccat ggctcatggg cccagctgct ctgcagcatg tgggatcttc ccagaccggg
     1021 gcatgaaccc atgtcccctg catcggcagg cggactctca accactgcgc caccagggaa
     1081 gccctcaact atctttttga tcttcttcaa agaggcaatt tctttaaaaa taatcttact
     1141 gtagtttttc tgtctgcagt aacaaacata tctgacatat tgtacccctc ccccatttac
     1201 ctgtttaaaa aatttgacag tttacggagt cgtgaagaga ctgatttcac accgttgaat
     1261 agtccctcca atctctcctg tctttgtcat acttttgagt atgacaccct tgatcttatt
     1321 tcattctctt aatctctggc accattccgg caaaatagat gagaaatgtc attgtagccc
     1381 tagatatgcc ctcttttctg aggagccagt ggaacagctt gtgagtatga agtgcccttc
     1441 tccttgttga cctagtaaag gcttattcgt tcatgagacc cccacgtgtg aatgtctggg
     1501 actgtcactg aattttggtc cctatcctaa aatagatcaa ttaataaatt tagaggtctt
     1561 ctggagaaag tcttaggttt taattctata tttattggct aaaagttgca gtttttcgtg
     1621 ttaatgcaga tatggccact gtctattatt agcacagtct caaagattgc tgtccattag
     1681 tgggggcccc tctgctctgt agtgtccttt acgttctttt tagggactca taacagtatc
     1741 tctttcccaa gaggttgtca tatcctggca cctaacctta taagagactg cttcataaac
     1801 taccgtgcca gtttactgat ttactatggg agaagagaag caggtgtagt aaaaggaccc
     1861 tgagcttgga gtgggggaag ctaaagtctg ttgccggttc cagagcctct tcttcttact
     1921 cataaggaaa ctaaggctca gaggggctaa gtgaggaaat tgttctgcat catctaagta
     1981 ttccttttta ggtgaggttt gaattgcaga caactagttg gtcagaaaaa aacactcatt
     2041 ttaataattt taattttttt tctcttccgt tatggtttat tacaggatat tgaatagagt
     2101 tccctgtttt atgcagtagg aacttgttgt ttatcgattc tatgtgtaat agtttgtatc
     2161 tgctaattcc aaactcccaa tctatccctc ccccaccccc cttccccttg gcaaccacaa
     2221 gtctgctctc tgtatctgat tactcacatt tattgattgg tggggagaag ggtagtgcct
     2281 tttcctcctt cctaatggtg ttttgagctt gtttgtaaaa gttggaagca acctaaacgt
     2341 gaatataagg aattggttat acaatttatg catatagtac acttacaaag taaggctgcc
     2401 atgaaaagtt atgcagaaga atattttaat aatgtagaaa atatttgcaa aatattttat
     2461 acaaaaatgt ttacaaaata ttgtacacaa acaaattgtc tccggacttt tttttttttt
     2521 ataaatttat ttatttattt gtatttggct gcgttgggtc ttcgttgctg tgcgcgggct
     2581 ttctctagtt gctgcgaagg gagggttact ctttgttgca ttgcacgggc ttctcattgc
     2641 agtggcttct cttgttgcgg agcaagggct ctaggtgtgt gggcttcagt agttgtggca
     2701 cgcgggctta gttgctctga ggcatgtggg atcttcctgg accagggctt gaacccatgt
     2761 cccctgcatt ggcaggcaga ttcttagcca ctgtgccacc agggaagccc catctctgga
     2821 cttctttttt tttttttttc ccgagtataa gttttgatgc caagatggac actgctttga
     2881 ataaaaatgt taactcatgt gatagtgtaa gttgatttta gtgactgaca accttgatta
     2941 tctttgttga cctcattatt ttagtcactt tagttctttg cttggtgagc acatatttta
     3001 aaaatgtgat ttggttattg gaaaccttta ttgttgaact actatgaaaa cactgtccta
     3061 caagcagagc aggcatgaat ggacattgat tagacaattt aaaaagaaac gaaaaaaggg
     3121 agagtgcccc cccaaaaaag attttgaaat caattttaat tgattgtgtc gtttcattta
     3181 tcaccttttc ttatttcaaa agcattgtct ccttttttta atttaattta atttttaaaa
     3241 tttttggccg cactgtgtgg cttgtgggat cttagttccc tgaccaggga ttaaacctgc
     3301 acccttggca gtgaaagcac ggagtcctaa ccactggact gctggggaat tcccaaaagc
     3361 agtatcttct tatgaccccc tcccaaatca aaatacagaa acacaagaag aaaagtgaat
     3421 gctaccaaaa atcctactcc actgcatatg ttaacatttg gtgtatatgc tgccacatcc
     3481 tttgcagtgc tgtgtatacc caaacataaa tatgcatata tattgtttaa aaaataaaaa
     3541 tatattactt taaatatcaa agtacagtgt atatgtgtat ctatatagat acatacactc
     3601 atacataatg tattttgatg tttaacatat atacatagga tatggctttc tcttggtgct
     3661 gtattattta actcaagtgg tctaagttct tgttaatgtt agttcagagg ttgtcctttg
     3721 ctttacctaa tatctgttgt tattgttttt cctaaccttt tacttcatta gtctattatt
     3781 cttggtgttc ccatcttttg ctcaaaattt aaagagtttg tttccatttt ggactctata
     3841 tggtccagaa atgtccagaa gtcttgatgc cttgcattgg ctgcacctgt aaagttttac
     3901 aaaaggacat tcttttaaaa gagatattct tgcttcttgc ttatagtggt gggtcctgct
     3961 gctattgctt tgggcttctc agactgcttg ggtatatgat gtgtgtttga attcccacat
     4021 agattgaata acagtaccca tattcaatac tcatgcagta ctttagcgtt caaaatatga
     4081 ttttacttac cttataatgg tatctccttc acaggattat taccctttct tacagtcgaa
     4141 attgaagagg tattatttcc tacatcaaac agttatatac attttgaacc tgagccttct
     4201 gatttcatgt ccctttagtc atttcattaa atcatgcctc tctttgtaaa ggctgtgatg
     4261 ggtaactcag tcttgctttc cagggttatg gatttttcac tttctttatt tatatatttg
     4321 agttttcagt cgtcttcagt ctcctgttga ccggaactcc catccagaac agccttcgag
     4381 agctctactc tctcctcagt tttgtggagc ctgatctctt ttccaaggag caggtggaag
     4441 atttcattca gcgttaccag gatattgaga aagagtctga gtcagccatt tctgctgagg
     4501 cgagtgaaag ctgaggtagc cacagagctt cccaagaaga cggaagtagt gatataccat
     4561 ggcatgtcag cgctgcagaa aaaatactac aaggccattt tgatgaaaga cctagacgcg
     4621 tttgaaaatg agatggcaaa gaaagttaaa cttcagaatg tcttgtccca gcttcgaaag
     4681 tgtgtggatc acccatattt atttgatggt gtggaaccag agccttttga aattggaggt
     4741 cacctgatag aggccagtgg gaaacttcac cttctggata agctgctggc attcctgtat
     4801 tccaagggcc atcgagtttt acttttctct caaatgaccc agatgttgga tattctccaa
     4861 gactacatgg attatagagg ctacagctat gagcgtgtgg atggctccgt gagaggagaa
     4921 gagagacacc tggccatcaa gaactttgga cagcagccca tctttatttt tctcctgagt
     4981 accagggcag gtggagttgg catgaactta acggcagcag ataccgtgat ttttgttgat
     5041 agtgatttca atccgcagaa tgacttgcaa gcagctgcca gggctcaccg aattggccag
     5101 aacaagtccg ttaaagtcat tcggctgatt ggccgagaca ctgtggaaga aatagtctgt
     5161 agaaaagcag cctccaagct gcagctcacc aacaccatca tagaaggggg ccattttact
     5221 ctgggagccc agaaacctgc tgcgcatgct gacctccagt tgagtgagat actcaaattc
     5281 ggtttggata aactgctgtc ctctgagggg agcaccatgg atgaaataga cctggagtct
     5341 atcctgggag aaacaaaaga tggccagtgg atctctggtg ccctgccgac agcagaagaa
     5401 agaagcagag aacaagagga aggaaaaaac cacatgtact tatttgaagg taaagattat
     5461 tctaaggagc ctagtaaaga agacagaaaa tcatttgagc aactggtgaa tcttcacaaa
     5521 acccttttgg agaagactag tcaagagggc cggttactcc gacataaagg cagtgttctc
     5581 atcccaggcc ttgtggaggg gtctaccaaa aggaagcgga ttctgagccc agaagagctg
     5641 gaggacagga ggaagaaaag acaagaagca gcagccaaga gaaagaaact attagaggag
     5701 aagaagagga gcaaggaaga agcagaacat aagaaaaaga tggcttggtg ggagtccaac
     5761 gattaccagt ccttctgcct gccttccgac gagagcgaac cagaggacct ggaggactgg
     5821 gaagacgaac gctctgccca actggattgt gaggacccgg actcgacctc catcaagtat
     5881 gtaagcggtg atgtcaccca cccacaggct ggggcggagg atgctgtcat cgtgcactgt
     5941 gtagatgact ccggccgctg gggcagaggt ggtttattca cagctctgga aaaaagatct
     6001 gctgagccaa gaaaaatata tgagctggct gggaaaatga aagatttgag tttgggaggt
     6061 gtccttttat ttcctattga tgataaagag tcaagaagca aagggcaaga tttgttggcc
     6121 ttgattgtgg cccagcaccg tgatcgtgcc aatgtcctgt ctggcattaa gatggcagcc
     6181 ctagacgagg gcctgaagaa gatattttta gcagcaaaga aaaagaaagc aagtgtccat
     6241 cttccacgca ttggacatgc cacggaaggt tttaactggt atggtactga gcgacttatt
     6301 cggaaacact tggcctcaag aggcatccca acttacatct actactttcc tagaagcaag
     6361 gctgccatcc ttcatccaca ggcctcatct tcctccttag gacagccggt gccttaacaa
     6421 tcggctcagc atcagatcca gccttcagca accagctaag atgtttgctc aaagctactg
     6481 taatagaata tttcaaaaag gaatcaggat ctggtgggcc tctgaggtac tctgttttct
     6541 gaattcgaat tttgttctct tggatgtggt actgatgtgg tgcgtgtaat acagggatgc
     6601 acgagatatt tgggaaaatc ctttggcagc ttgccagggc cccagtttgc acagctattt
     6661 gcataataat aaatacattt tctatctcta a
//
LOCUS       XM_032608465            2116 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dimethylaniline monooxygenase
            [N-oxide-forming] 5 (LOC116741621), transcript variant X1, mRNA.
ACCESSION   XM_032608465
VERSION     XM_032608465.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2116
                     /gene="LOC116741621"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 Proteins, and 77% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116741621"
     CDS             180..1781
                     /gene="LOC116741621"
                     /codon_start=1
                     /product="dimethylaniline monooxygenase [N-oxide-forming]
                     5 isoform X1"
                     /protein_id="XP_032464356.1"
                     /db_xref="GeneID:116741621"
                     /translation="MTKKRIAVIGGGASGLTSIKCCLEEGLEPVCFEGTDDIGGLWRF
                     QEEPEKGRASIYKSVVINTSKEMMCFSDYPVPDHYPNYMHNSQVLEYFRMYAKEFDLL
                     KYIRFKTTVCSVKKQPDFSTSGQWEVVTVSEGKKEVNVFDGVMVCTGHHTNAHLPLES
                     FPGIEKFKGQYFHSRDYKNSESFTGKRVIIIGIGNSGGDLAVEISHTAKQVFLSTRRG
                     AWIFNRVGDYGYPVDVLFSSRFKYFMKKICGQTLANTFLEKKMNQRFDHEMFGLKPKH
                     RALSQHPTINDFLPNCIISGLVKVKSNVKEFTETAAIFEDGSREDDIDAVIFATGYSF
                     AFPFLEDSVKVVKNKISLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRWVTQV
                     FKGIKTLPLQNEMIKEIAKVQEDMAKRYVDSQRHTIQGDYIDTMDELADLVGVRPNLL
                     SLAFTDPKLALQLFWGPCTPIQYRLQGPGKWDGARKAILTTEDRIRKPLMTRVIESNN
                     STTSTITVARFMLAVAFFAIIMTYF"
     misc_feature    186..1775
                     /gene="LOC116741621"
                     /note="Flavin-binding monooxygenase-like; Region:
                     FMO-like; pfam00743"
                     /db_xref="CDD:395602"
ORIGIN      
        1 gtccacgagg acactggaat ctgggttccc caaaggcacc tgctgctgca gaatttatct
       61 aaatgccacg ttcaagctct tcttagaaag gtattaactg atgtgtgctt tctgtctttt
      121 gtcatccttt ctttaggaca ggttacactg acacagcccg gtgacgatct ctggagacca
      181 tgaccaagaa aagaatcgct gtgattgggg gaggagcgag tgggctcacg tctatcaagt
      241 gctgcctgga agaaggcttg gagcccgtct gctttgaagg gactgatgac atcggagggc
      301 tgtggaggtt tcaggaagaa cctgaaaaag gaagggccag tatttacaag tcagtggtca
      361 tcaacacttc taaggagatg atgtgcttca gtgactatcc cgtcccagat cactatccta
      421 actacatgca caactcccag gtcctggagt atttcaggat gtatgccaaa gaatttgacc
      481 ttctaaagta cattcgattt aagaccaccg tgtgcagtgt gaagaagcag cctgatttct
      541 ccacttcagg ccaatgggag gttgtcacgg tatctgaagg gaaaaaggag gtgaatgtct
      601 tcgatggagt tatggtttgc actggccatc acaccaatgc tcatttaccc ttggaaagct
      661 tccctggaat tgagaagttc aaaggacagt acttccatag tcgagattat aagaattcag
      721 agagtttcac cggaaagaga gtcattataa ttggcattgg gaattctgga ggcgatctgg
      781 ctgtggaaat tagccacaca gccaagcagg ttttcctcag caccagaaga ggggcttgga
      841 tcttcaatcg tgtcggagac tatggatatc ctgttgatgt gctattctct tctcgattta
      901 aatattttat gaagaagatt tgtggtcaaa cattagcaaa tacatttttg gaaaaaaaga
      961 tgaaccaaag gtttgatcat gaaatgtttg gcctgaagcc taaacacaga gctctgagtc
     1021 agcatccaac gataaatgac tttctgccaa attgtataat ttctggcttg gtgaaggtga
     1081 aatcaaacgt gaaggaattc acagagacag cggccatatt tgaggatggc tccagggaag
     1141 atgacattga tgctgtgatc tttgctacag gctatagctt tgcctttcct tttcttgaag
     1201 attctgtcaa agtagtcaaa aacaagatat ctctgtataa aaaggtcttc cctcctaacc
     1261 tagaaaagcc aactcttgca atcataggct tgatccagcc cttgggtgcc attatgccca
     1321 tttcagagct ccaaggacgc tgggtcactc aagtatttaa agggataaag acattaccct
     1381 tacaaaatga aatgataaaa gaaatagcta aggttcaaga agatatggcc aaaaggtatg
     1441 tggacagcca acgccatacc attcagggag actatataga taccatggat gagcttgctg
     1501 atctggtggg cgtcaggccc aatctgctgt ccctggcctt cactgacccc aaattggcat
     1561 tacagttatt ttggggaccc tgtactccaa tccagtatcg gctacagggc cctggaaagt
     1621 gggatggagc tcgaaaagct atcctcacca cagaagatcg tatcaggaag ccgctaatga
     1681 caagagtaat tgaaagcaac aattccacaa cttcaacaat aacagtggcc aggtttatgc
     1741 tggctgtggc tttctttgct ataattatga cctattttta gctgttccat tgtcactgtc
     1801 ttctctgaaa gctggatctg gaggtgcttt cagaacctga caagattgaa caactctcag
     1861 cttcacattg cccagaaagc tacttttatt tctctttcca aagcattaat cctttttcct
     1921 cttttcccta tagtgaaatc ccaccttttc atttgtactg acttacctcc cttactctta
     1981 tgacccatca ctttttcctt tcagtcattc ctggactgtg agctcaggta ctctgttagt
     2041 catctttgtt tgtccttagc agagttcctg aaatgtggta ggtgctttct tttctttttt
     2101 ttacatcttt attgga
//
LOCUS       XM_032608472            1754 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dimethylaniline monooxygenase
            [N-oxide-forming] 5 (LOC116741621), transcript variant X2, mRNA.
ACCESSION   XM_032608472
VERSION     XM_032608472.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1754
                     /gene="LOC116741621"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 55%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741621"
     CDS             180..1496
                     /gene="LOC116741621"
                     /codon_start=1
                     /product="dimethylaniline monooxygenase [N-oxide-forming]
                     5 isoform X2"
                     /protein_id="XP_032464363.1"
                     /db_xref="GeneID:116741621"
                     /translation="MTKKRIAVIGGGASGLTSIKCCLEEGLEPVCFEGTDDIGGLWRF
                     QEEPEKGRASIYKSVVINTSKEMMCFSDYPVPDHYPNYMHNSQVLEYFRMYAKEFDLL
                     KYIRFKTTVCSVKKQPDFSTSGQWEVVTVSEGKKEVNVFDGVMVCTGHHTNAHLPLES
                     FPGIEKFKGQYFHSRDYKNSESFTGKRVIIIGIGNSGGDLAVEISHTAKQVFLSTRRG
                     AWIFNRVGDYGYPVDVLFSSRFKYFMKKICGQTLANTFLEKKMNQRFDHEMFGLKPKH
                     RALSQHPTINDFLPNCIISGLVKVKSNVKEFTETAAIFEDGSREDDIDAVIFATGYSF
                     AFPFLEDSVKVVKNKISLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRWVTQV
                     FKGIKTLPLQNEMIKEIAKVQEDMAKSLTMRKTSDKPRFRSILQNT"
     misc_feature    186..>1433
                     /gene="LOC116741621"
                     /note="Flavin-binding monooxygenase-like; Region:
                     FMO-like; pfam00743"
                     /db_xref="CDD:395602"
ORIGIN      
        1 gtccacgagg acactggaat ctgggttccc caaaggcacc tgctgctgca gaatttatct
       61 aaatgccacg ttcaagctct tcttagaaag gtattaactg atgtgtgctt tctgtctttt
      121 gtcatccttt ctttaggaca ggttacactg acacagcccg gtgacgatct ctggagacca
      181 tgaccaagaa aagaatcgct gtgattgggg gaggagcgag tgggctcacg tctatcaagt
      241 gctgcctgga agaaggcttg gagcccgtct gctttgaagg gactgatgac atcggagggc
      301 tgtggaggtt tcaggaagaa cctgaaaaag gaagggccag tatttacaag tcagtggtca
      361 tcaacacttc taaggagatg atgtgcttca gtgactatcc cgtcccagat cactatccta
      421 actacatgca caactcccag gtcctggagt atttcaggat gtatgccaaa gaatttgacc
      481 ttctaaagta cattcgattt aagaccaccg tgtgcagtgt gaagaagcag cctgatttct
      541 ccacttcagg ccaatgggag gttgtcacgg tatctgaagg gaaaaaggag gtgaatgtct
      601 tcgatggagt tatggtttgc actggccatc acaccaatgc tcatttaccc ttggaaagct
      661 tccctggaat tgagaagttc aaaggacagt acttccatag tcgagattat aagaattcag
      721 agagtttcac cggaaagaga gtcattataa ttggcattgg gaattctgga ggcgatctgg
      781 ctgtggaaat tagccacaca gccaagcagg ttttcctcag caccagaaga ggggcttgga
      841 tcttcaatcg tgtcggagac tatggatatc ctgttgatgt gctattctct tctcgattta
      901 aatattttat gaagaagatt tgtggtcaaa cattagcaaa tacatttttg gaaaaaaaga
      961 tgaaccaaag gtttgatcat gaaatgtttg gcctgaagcc taaacacaga gctctgagtc
     1021 agcatccaac gataaatgac tttctgccaa attgtataat ttctggcttg gtgaaggtga
     1081 aatcaaacgt gaaggaattc acagagacag cggccatatt tgaggatggc tccagggaag
     1141 atgacattga tgctgtgatc tttgctacag gctatagctt tgcctttcct tttcttgaag
     1201 attctgtcaa agtagtcaaa aacaagatat ctctgtataa aaaggtcttc cctcctaacc
     1261 tagaaaagcc aactcttgca atcataggct tgatccagcc cttgggtgcc attatgccca
     1321 tttcagagct ccaaggacgc tgggtcactc aagtatttaa agggataaag acattaccct
     1381 tacaaaatga aatgataaaa gaaatagcta aggttcaaga agatatggcc aaaagtctaa
     1441 ctatgaggaa aacatcagac aaacccaggt tcaggagtat cttacaaaat acctgaccat
     1501 ctcaaaactg aagctcatca aaaaaaagga aggtctgaga aattgtcata gtatagagga
     1561 gcctaagacc tgatgtctaa atgtaatgta ccttggatgg gatcttggaa catagaaaga
     1621 cattaagtaa aaatggaaga aatattaata aagtatggat tatggttaat aacaaggtac
     1681 tgattggttt attggttgtg actaatgtag cactgtaaca taagatgtta ccaataaaat
     1741 aaattgtgtg tggg
//
LOCUS       XM_032608483            5179 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein kinase AMP-activated
            non-catalytic subunit beta 2 (PRKAB2), transcript variant X1, mRNA.
ACCESSION   XM_032608483
VERSION     XM_032608483.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5179
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5179
                     /gene="PRKAB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741629"
     CDS             60..878
                     /gene="PRKAB2"
                     /codon_start=1
                     /product="5'-AMP-activated protein kinase subunit beta-2"
                     /protein_id="XP_032464374.1"
                     /db_xref="GeneID:116741629"
                     /translation="MGNTTSDRVAGERHGAKAARAEGAGSHAPGKEHKIMVGSTDDPS
                     VFSLPDSKLPGDKEFVSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTK
                     IPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDF
                     EVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILN
                     KDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI"
     misc_feature    288..542
                     /gene="PRKAB2"
                     /note="Glycogen recognition site of AMP-activated protein
                     kinase; Region: AMPK1_CBM; pfam16561"
                     /db_xref="CDD:465176"
     misc_feature    606..875
                     /gene="PRKAB2"
                     /note="5'-AMP-activated protein kinase beta subunit,
                     interation domain; Region: AMPKBI; smart01010"
                     /db_xref="CDD:214973"
ORIGIN      
        1 tggtcccggg aggaggcaga gcatcgcggg aggtggcccc cgactcgagc tgcaccgcca
       61 tgggaaacac caccagcgac cgggtggccg gggagcgcca cggcgccaag gctgcgcgcg
      121 ccgagggcgc cggcagccat gccccgggca aggaacataa gatcatggtg gggagcaccg
      181 atgaccccag cgtcttcagc ctgccggatt ccaagctccc tggggacaaa gagtttgtat
      241 catggcagca ggatttggag gactccgtaa agcccacaca gcaggcccgg cccactgtta
      301 tccgctggtc tgaaggaggc aaggaggtct tcatctctgg gtccttcaac aattggagca
      361 ccaagattcc actgattaag agccataatg actttgttgc catcctggac ctccctgagg
      421 gagagcacca gtacaagttc tttgtggatg gacaatgggt tcatgatcca tcagagcctg
      481 tggttaccag tcagcttggc acaattaaca atttgatcca tgtcaagaaa tctgattttg
      541 aggtgtttga tgctttaaag ctagattcaa tggaaagctc agagacatct tgtcgagacc
      601 tttccagctc acccccaggg ccttatggtc aagaaatgta tgtgtttcga tcagaggaga
      661 gattcaaatc cccacccatc ctgcctcctc accttctcca agttattctt aacaaggaca
      721 ctaatatatc ttgtgatcca gccttgctcc ccgagcccaa tcatgttatg ctgaaccatc
      781 tctatgcatt gtccattaag gacagtgtga tggtccttag cgcgacgcat cgctacaaga
      841 agaagtatgt cactactctg ctgtacaagc ccatctgaag ggattccttc ctgcctccca
      901 ggattcagga gaagcgtctc ccttgccttt ctggactaga ccagtcttac ctgggactgg
      961 aaggctgatt tgctttgagg ctaatatgtt tgtttcagag cctctgagta ggatgctctg
     1021 cttttgcatt tgattgcaaa tgagagcttt aggagttcat ggaatttatt ttaagaaaaa
     1081 atcatatata tacatacaca cacacacaca cacacacaca cacacacacg agaggaaagt
     1141 taatggaagc ctcctagcta gatgtattct ctctgcctgt gggaactcac caagatctgt
     1201 tggggagagc tgcaggaaga accattacag gaagcttttt tcctaaagtg aatgaagagc
     1261 aaactctcag gatccttgtt gggtagagat tctatcactg ctaccttggc tctccaagga
     1321 atggacttgt gccagagcgc tgccctactt acagctgcct ccttgcagga gcagcttttc
     1381 ttgcatgggt tctccatatt cccagagtat gtgcacaatc tgtgtttttt ttatgatacc
     1441 aggtacccca caagaaccct ttttcctctc atttcacatt ctcgctttgt taacctcctt
     1501 cagatcctat atctgactct tgcctaacac aaaactcagt gggtaagtga cccctttcaa
     1561 aggctgtgtg agggcttccc tggtggcgca gtggctgaga gtccgccagc cgatgcaggg
     1621 gacacgggtt cgtgccctgg tccaggaaga tcccacatgc cacagagcag ctgggcccat
     1681 gagccatggc cgctgagcct gtgcgtccgg agcctgtgct ccgcaacggg agaggccaca
     1741 acagtgagag gcccgcataa ccacaaacaa acaaacaaaa ggctgtgtga gacctgaccc
     1801 accttacaga ctagggtggc cagaaagtct cctttttaag ctcagcacag gcccatgaca
     1861 ctttgtcacc acttatttta acttctactg aagaaaatat ggctcagcct tatacggaag
     1921 gcagaatgca agtctactct tttgttttgg tttttggtgc cacagtttag gctgtattgg
     1981 cacattccca tactttttcc cacctggttt ggccctgctt ccatgttttc tttcacagag
     2041 cagatagctt tgaaggtggg agtgaagcca gggaaaactt tcatgtcttt catccttgga
     2101 agatttttat gtgtctacgt ttttctttta tcagaaaatg gcttttcggg cttccctggt
     2161 ggcgcagtgg ttgagagtct gcctgccgat tcaggggaca cgggttcgtg ccccggtctg
     2221 ggaagatccc gcatgccgcg gagcggctgg gcccgtgagc cacggccgct gagcctgcgt
     2281 gtccggagcc tgtgcttcgc aacgggagag gccacagcag tgagaggccc gcgtaccgca
     2341 aaaaaaaaaa aagccttttc attggtctta agagactgca tttggagaac ttcaggctta
     2401 tgataaattg ctcccaatat tttcttctct agtctggtcc cgtacagtct tagattaata
     2461 aggctgactc tgtgtacatc attacagtaa acattgctct agatacagac ccattcaggc
     2521 tcattttatg cacctaaaag tgtccctcaa cttaaggatt caagaggcaa gaaattaccc
     2581 ttggtgttcc cagccatgaa aagtatccct ttcatgcact aaatgctaac agttatcttt
     2641 ttcttctgta tcttccagaa agtgttgatg aagtggggtc agtgacttcc atttgtggag
     2701 taaaaagtat ctattcactc cactcttgag attcagagat aagatatttt tccccaagtt
     2761 tctgtggctc ttccattaca cataaatgca agccaaacat tcaatactga aggaggctaa
     2821 acttgttgct ggagaggctc cttgactgct aagatgaacc cagccccact gaaagggcac
     2881 ccacaggtaa attagctacc tcctgtcttt cccacgtaaa gctgatgata cagttgtctt
     2941 ccagtatgta gaactcttag atcctgtgtg tgaggcagta gggtatggga ttgttgtctt
     3001 gctgggaatg taaattgcta agtgctttgg tggttaattg ctgagagtaa atactgcttt
     3061 agccactcaa ggccaccatc cgcctcaaaa ggcttttgtg gagaacgttt tatggttcca
     3121 atcactttta gaatggtgtg ccattttaaa aatccaggcc aaattctgtt actaccaact
     3181 ctcaggatct acattgtctt cagttatact agaattttgt tttttccatt acccattaaa
     3241 caagtgggcc acttaggagg atttaaaatc ttggttgtca cctagaggat tttgttgtac
     3301 tcatatgtct tgtcagcagt attgacatgt aattgtctct gtgttcctgt attaaaatct
     3361 ctattctgca cagataatta gagtgtggca ggaaaagaga ttccttcagt ttctctcagg
     3421 ccagaggctt ctgtgaaatg ggtctgtctc cagtgacagt aggttttggt gctggtgacc
     3481 ttcagatcct tctaatctgg aaatgtgtag aaagtgtcag ttttccaaat tctgaggtaa
     3541 tctttcagcc agatgtgaaa ctggagccta ccagctggta tggaaaggga tcagtaagag
     3601 gaattggatg atgactcatt cagccctgtc ccttctctgt actgctgact aacataccac
     3661 ggcctggaga attcctatca tactctcagt ctgtccccta gaaactgttc tagaaggttg
     3721 cgagggaggg aggaaggtac ccaagagtac agttcactca ttcttttata ttggttaaag
     3781 ggatggttta ttttctacag aagaatttga cagattttga aaacgaatac aggaaaaaga
     3841 tttttttagg gtttttaaaa tgtgttttgc ctataagagt ttcacagtca aagtaagaat
     3901 gtaattctta gggagggctg actcttgaac tgtatcatgg tttaggagtt atgggaaaaa
     3961 gaaagagtaa ctgagctgag gagtggtact aggaaagtta aggcttaagt aactcggaac
     4021 taaaaatatc cttttttaaa ttaaatcaaa cgtatactgg tgtctttgga tctcattgta
     4081 cagaatttac agtataaaaa atctttttct tgtttctatt ttctacactt tctcctatgt
     4141 tgtgctttaa cttcatgtgt caggcagact ttaccagggt ctaaagtcaa acattaccta
     4201 aaacaaatat tagtcatctt gctggtaagg agaacttctg tgttatggtt attagcttgt
     4261 tttaagctta gagttgaatg agatttaatc actgtaggca aaacccctga aggtcatacc
     4321 tggcctcaac agtgttggct tttttttaaa acagtgctta tatatggtaa agaagctctg
     4381 taaaagaaga atccaagaga ggtttctgac aggatcctac aaacccaggc ctgctcactt
     4441 caccccaatt atttctagtc tcgtagacct aatggatctg agataaaatc tttgataagt
     4501 gttggtactc cacatatgct actaaaatga aggtaaattc agaaagaagt gttacctctg
     4561 gactggtctt acattaatct gggtataaat gaaggaggca cattaatgat atagaatccc
     4621 ctgcttttaa ttggggaagt agagctttta aatttttgac ctcaactaaa aatgatatgc
     4681 agtagtctat gtttgcgtat gtttgaaata cattctattc tcagagattt ctaaatcctc
     4741 acgttctagt gatttggggc ctaggcttaa gagcagatac acagttggtt cctgcattat
     4801 tgtgactcat ccttaaagcc aagttgttgc tgtcttctag gaactgctga ctctagttac
     4861 ccatgggatg gaggacctgg gagggatagg agttagggtc ttttaaaact ctggatctag
     4921 gcatttgtct ctccttaagc accagtcaca actggaggtt gaagggctgt gatttctgaa
     4981 atgaactgaa acttttggag taaaaaggcc aaatctttaa aaattataag aaaacagaaa
     5041 gaaaaggaaa gaattccaag agtctgttac ttacgaaatc caattcttcg cagtggaatc
     5101 cctctaggat tcaaatttgg gctttgtctt gatttgcttt actcagttgt gctttttttt
     5161 tttttgaggt acgtgggcc
//
LOCUS       XM_032608493            5203 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein kinase AMP-activated
            non-catalytic subunit beta 2 (PRKAB2), transcript variant X2, mRNA.
ACCESSION   XM_032608493
VERSION     XM_032608493.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5203
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5203
                     /gene="PRKAB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116741629"
     CDS             84..902
                     /gene="PRKAB2"
                     /codon_start=1
                     /product="5'-AMP-activated protein kinase subunit beta-2"
                     /protein_id="XP_032464384.1"
                     /db_xref="GeneID:116741629"
                     /translation="MGNTTSDRVAGERHGAKAARAEGAGSHAPGKEHKIMVGSTDDPS
                     VFSLPDSKLPGDKEFVSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTK
                     IPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDF
                     EVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILN
                     KDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI"
     misc_feature    312..566
                     /gene="PRKAB2"
                     /note="Glycogen recognition site of AMP-activated protein
                     kinase; Region: AMPK1_CBM; pfam16561"
                     /db_xref="CDD:465176"
     misc_feature    630..899
                     /gene="PRKAB2"
                     /note="5'-AMP-activated protein kinase beta subunit,
                     interation domain; Region: AMPKBI; smart01010"
                     /db_xref="CDD:214973"
ORIGIN      
        1 agagcatcgc gggaggtgat tggggtggga gcgcccctgg gcagtgagcg cggagggtgg
       61 cccccgactc gagctgcacc gccatgggaa acaccaccag cgaccgggtg gccggggagc
      121 gccacggcgc caaggctgcg cgcgccgagg gcgccggcag ccatgccccg ggcaaggaac
      181 ataagatcat ggtggggagc accgatgacc ccagcgtctt cagcctgccg gattccaagc
      241 tccctgggga caaagagttt gtatcatggc agcaggattt ggaggactcc gtaaagccca
      301 cacagcaggc ccggcccact gttatccgct ggtctgaagg aggcaaggag gtcttcatct
      361 ctgggtcctt caacaattgg agcaccaaga ttccactgat taagagccat aatgactttg
      421 ttgccatcct ggacctccct gagggagagc accagtacaa gttctttgtg gatggacaat
      481 gggttcatga tccatcagag cctgtggtta ccagtcagct tggcacaatt aacaatttga
      541 tccatgtcaa gaaatctgat tttgaggtgt ttgatgcttt aaagctagat tcaatggaaa
      601 gctcagagac atcttgtcga gacctttcca gctcaccccc agggccttat ggtcaagaaa
      661 tgtatgtgtt tcgatcagag gagagattca aatccccacc catcctgcct cctcaccttc
      721 tccaagttat tcttaacaag gacactaata tatcttgtga tccagccttg ctccccgagc
      781 ccaatcatgt tatgctgaac catctctatg cattgtccat taaggacagt gtgatggtcc
      841 ttagcgcgac gcatcgctac aagaagaagt atgtcactac tctgctgtac aagcccatct
      901 gaagggattc cttcctgcct cccaggattc aggagaagcg tctcccttgc ctttctggac
      961 tagaccagtc ttacctggga ctggaaggct gatttgcttt gaggctaata tgtttgtttc
     1021 agagcctctg agtaggatgc tctgcttttg catttgattg caaatgagag ctttaggagt
     1081 tcatggaatt tattttaaga aaaaatcata tatatacata cacacacaca cacacacaca
     1141 cacacacaca cacgagagga aagttaatgg aagcctccta gctagatgta ttctctctgc
     1201 ctgtgggaac tcaccaagat ctgttgggga gagctgcagg aagaaccatt acaggaagct
     1261 tttttcctaa agtgaatgaa gagcaaactc tcaggatcct tgttgggtag agattctatc
     1321 actgctacct tggctctcca aggaatggac ttgtgccaga gcgctgccct acttacagct
     1381 gcctccttgc aggagcagct tttcttgcat gggttctcca tattcccaga gtatgtgcac
     1441 aatctgtgtt ttttttatga taccaggtac cccacaagaa ccctttttcc tctcatttca
     1501 cattctcgct ttgttaacct ccttcagatc ctatatctga ctcttgccta acacaaaact
     1561 cagtgggtaa gtgacccctt tcaaaggctg tgtgagggct tccctggtgg cgcagtggct
     1621 gagagtccgc cagccgatgc aggggacacg ggttcgtgcc ctggtccagg aagatcccac
     1681 atgccacaga gcagctgggc ccatgagcca tggccgctga gcctgtgcgt ccggagcctg
     1741 tgctccgcaa cgggagaggc cacaacagtg agaggcccgc ataaccacaa acaaacaaac
     1801 aaaaggctgt gtgagacctg acccacctta cagactaggg tggccagaaa gtctcctttt
     1861 taagctcagc acaggcccat gacactttgt caccacttat tttaacttct actgaagaaa
     1921 atatggctca gccttatacg gaaggcagaa tgcaagtcta ctcttttgtt ttggtttttg
     1981 gtgccacagt ttaggctgta ttggcacatt cccatacttt ttcccacctg gtttggccct
     2041 gcttccatgt tttctttcac agagcagata gctttgaagg tgggagtgaa gccagggaaa
     2101 actttcatgt ctttcatcct tggaagattt ttatgtgtct acgtttttct tttatcagaa
     2161 aatggctttt cgggcttccc tggtggcgca gtggttgaga gtctgcctgc cgattcaggg
     2221 gacacgggtt cgtgccccgg tctgggaaga tcccgcatgc cgcggagcgg ctgggcccgt
     2281 gagccacggc cgctgagcct gcgtgtccgg agcctgtgct tcgcaacggg agaggccaca
     2341 gcagtgagag gcccgcgtac cgcaaaaaaa aaaaaagcct tttcattggt cttaagagac
     2401 tgcatttgga gaacttcagg cttatgataa attgctccca atattttctt ctctagtctg
     2461 gtcccgtaca gtcttagatt aataaggctg actctgtgta catcattaca gtaaacattg
     2521 ctctagatac agacccattc aggctcattt tatgcaccta aaagtgtccc tcaacttaag
     2581 gattcaagag gcaagaaatt acccttggtg ttcccagcca tgaaaagtat ccctttcatg
     2641 cactaaatgc taacagttat ctttttcttc tgtatcttcc agaaagtgtt gatgaagtgg
     2701 ggtcagtgac ttccatttgt ggagtaaaaa gtatctattc actccactct tgagattcag
     2761 agataagata tttttcccca agtttctgtg gctcttccat tacacataaa tgcaagccaa
     2821 acattcaata ctgaaggagg ctaaacttgt tgctggagag gctccttgac tgctaagatg
     2881 aacccagccc cactgaaagg gcacccacag gtaaattagc tacctcctgt ctttcccacg
     2941 taaagctgat gatacagttg tcttccagta tgtagaactc ttagatcctg tgtgtgaggc
     3001 agtagggtat gggattgttg tcttgctggg aatgtaaatt gctaagtgct ttggtggtta
     3061 attgctgaga gtaaatactg ctttagccac tcaaggccac catccgcctc aaaaggcttt
     3121 tgtggagaac gttttatggt tccaatcact tttagaatgg tgtgccattt taaaaatcca
     3181 ggccaaattc tgttactacc aactctcagg atctacattg tcttcagtta tactagaatt
     3241 ttgttttttc cattacccat taaacaagtg ggccacttag gaggatttaa aatcttggtt
     3301 gtcacctaga ggattttgtt gtactcatat gtcttgtcag cagtattgac atgtaattgt
     3361 ctctgtgttc ctgtattaaa atctctattc tgcacagata attagagtgt ggcaggaaaa
     3421 gagattcctt cagtttctct caggccagag gcttctgtga aatgggtctg tctccagtga
     3481 cagtaggttt tggtgctggt gaccttcaga tccttctaat ctggaaatgt gtagaaagtg
     3541 tcagttttcc aaattctgag gtaatctttc agccagatgt gaaactggag cctaccagct
     3601 ggtatggaaa gggatcagta agaggaattg gatgatgact cattcagccc tgtcccttct
     3661 ctgtactgct gactaacata ccacggcctg gagaattcct atcatactct cagtctgtcc
     3721 cctagaaact gttctagaag gttgcgaggg agggaggaag gtacccaaga gtacagttca
     3781 ctcattcttt tatattggtt aaagggatgg tttattttct acagaagaat ttgacagatt
     3841 ttgaaaacga atacaggaaa aagatttttt tagggttttt aaaatgtgtt ttgcctataa
     3901 gagtttcaca gtcaaagtaa gaatgtaatt cttagggagg gctgactctt gaactgtatc
     3961 atggtttagg agttatggga aaaagaaaga gtaactgagc tgaggagtgg tactaggaaa
     4021 gttaaggctt aagtaactcg gaactaaaaa tatccttttt taaattaaat caaacgtata
     4081 ctggtgtctt tggatctcat tgtacagaat ttacagtata aaaaatcttt ttcttgtttc
     4141 tattttctac actttctcct atgttgtgct ttaacttcat gtgtcaggca gactttacca
     4201 gggtctaaag tcaaacatta cctaaaacaa atattagtca tcttgctggt aaggagaact
     4261 tctgtgttat ggttattagc ttgttttaag cttagagttg aatgagattt aatcactgta
     4321 ggcaaaaccc ctgaaggtca tacctggcct caacagtgtt ggcttttttt taaaacagtg
     4381 cttatatatg gtaaagaagc tctgtaaaag aagaatccaa gagaggtttc tgacaggatc
     4441 ctacaaaccc aggcctgctc acttcacccc aattatttct agtctcgtag acctaatgga
     4501 tctgagataa aatctttgat aagtgttggt actccacata tgctactaaa atgaaggtaa
     4561 attcagaaag aagtgttacc tctggactgg tcttacatta atctgggtat aaatgaagga
     4621 ggcacattaa tgatatagaa tcccctgctt ttaattgggg aagtagagct tttaaatttt
     4681 tgacctcaac taaaaatgat atgcagtagt ctatgtttgc gtatgtttga aatacattct
     4741 attctcagag atttctaaat cctcacgttc tagtgatttg gggcctaggc ttaagagcag
     4801 atacacagtt ggttcctgca ttattgtgac tcatccttaa agccaagttg ttgctgtctt
     4861 ctaggaactg ctgactctag ttacccatgg gatggaggac ctgggaggga taggagttag
     4921 ggtcttttaa aactctggat ctaggcattt gtctctcctt aagcaccagt cacaactgga
     4981 ggttgaaggg ctgtgatttc tgaaatgaac tgaaactttt ggagtaaaaa ggccaaatct
     5041 ttaaaaatta taagaaaaca gaaagaaaag gaaagaattc caagagtctg ttacttacga
     5101 aatccaattc ttcgcagtgg aatccctcta ggattcaaat ttgggctttg tcttgatttg
     5161 ctttactcag ttgtgctttt tttttttttg aggtacgtgg gcc
//
LOCUS       XM_032608505            2328 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus antizyme inhibitor 2 (AZIN2), transcript
            variant X1, mRNA.
ACCESSION   XM_032608505
VERSION     XM_032608505.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2328
                     /gene="AZIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116741637"
     CDS             193..1659
                     /gene="AZIN2"
                     /codon_start=1
                     /product="antizyme inhibitor 2 isoform X1"
                     /protein_id="XP_032464396.1"
                     /db_xref="GeneID:116741637"
                     /translation="MAGRLSEADFVMVEEGFSTRDLLEQLTLGASQATTEEVAAFFVA
                     DLGAVVRKHFCFLKCLPRVRPFYAVKCNNSPGVLKVLAELGLGFSCANKAEMELVQHI
                     GVPASKIIYGNPCKQIAHIKYAAKHGVRLLSFDNEMELAKVVKSHPSAKGAACLLRMV
                     LCIATNDSHSRSRLSLKFGVSLKSCRQLFEDAKRNHIEVVGVSFHIGSGCPDPQAYAQ
                     SIADARLVFEMGAELGHRMHILDLGGGFPGVEGAKVRFEEISSVINSALDLYFPEGCG
                     VDILAKLGRYYVTSAFTLAVSIIAKKEVLLEQPGREEENGSAPKTILYRLGEGEYGIF
                     NSVLFDNTCPTPILQKKPSTEQPLYSSSLWGPVIDGCDCIAEGLWLPQLHVGDWLVFE
                     NMGAYTMGMGSLLGGAQTCRITYAMSRVAWEALRGQLLPAEQDEDAEGTCRPLSCGWE
                     ITDTLCMRPVFTPASIIFQPLQLPVTPRSPGGRGFPAA"
     misc_feature    310..1401
                     /gene="AZIN2"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Ornithine Decarboxylase; Region: PLPDE_III_ODC;
                     cd00622"
                     /db_xref="CDD:143482"
     misc_feature    order(394..396,400..402,457..459,676..678,805..807,
                     814..816,922..927,1036..1047,1210..1212,1294..1296,
                     1381..1383)
                     /gene="AZIN2"
                     /note="active site"
                     /db_xref="CDD:143482"
     misc_feature    order(394..396,400..402,457..459,676..678,805..807,
                     814..816,922..927,1036..1047,1294..1296,1381..1383)
                     /gene="AZIN2"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(400..402,463..468,472..477,541..543,556..558,
                     595..597,604..606,616..618,718..726,1087..1089,1093..1098,
                     1126..1128,1165..1167,1171..1173,1180..1185,1207..1209,
                     1213..1215,1285..1287,1291..1293,1297..1299,1306..1308,
                     1393..1395,1399..1401)
                     /gene="AZIN2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(400..402,1294..1296)
                     /gene="AZIN2"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143482"
     misc_feature    order(1207..1212,1294..1299,1381..1383)
                     /gene="AZIN2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143482"
ORIGIN      
        1 caggggcctc ggctccgcag ctgccactcc tcctcggggt gctgcacaag tttcgaggtc
       61 accggcgacc ccccctagca gcgtgcctga ctctggcccc gcgaaggagc acggggcttg
      121 aagtgtgttg catactttct aaggcaccgg aggcagcggc agctccatcc agcccatcgg
      181 ctcctccgcg gcatggctgg ccgcctgagt gaagcggact tcgtgatggt ggaggagggc
      241 ttcagcaccc gagacctgct ggagcagctc actctggggg cctcacaggc caccacggaa
      301 gaggtcgctg ccttctttgt ggccgacctg ggtgctgtag tgcgaaagca cttctgcttt
      361 ctgaagtgcc tgccgcgagt ccgacccttt tacgctgtca agtgcaacaa cagcccgggt
      421 gtgctgaagg tcctggctga gctaggactg ggcttcagct gtgccaacaa ggcagagatg
      481 gagttggtcc agcatattgg tgtccctgcc agtaagatca tctacggcaa cccctgtaag
      541 caaattgcac acatcaagta tgctgccaag catggggtcc ggctgctgag ctttgacaac
      601 gagatggagc tggcaaaggt ggtaaaaagc caccccagtg ccaaaggtgc tgcgtgtctc
      661 ctcaggatgg ttctgtgcat tgccaccaat gactcccact cccggagccg cctgagcctc
      721 aagttcggag tgtcgctgaa atcctgcaga caactgtttg aagatgccaa gaggaaccac
      781 atagaggtgg tgggtgtgag ttttcacatt ggcagtggct gtcctgaccc tcaggcctac
      841 gctcagtcca tcgcagacgc ccggcttgtg tttgaaatgg gtgctgagct gggccacagg
      901 atgcacatcc tggaccttgg cggcggcttc cctggagtgg agggggccaa agtgagattc
      961 gaagagattt cttctgtgat caactcagcc ttggacctgt acttcccgga gggctgtggt
     1021 gtggacatcc ttgccaagct ggggcgctac tatgtgacct cggccttcac cttggcagtc
     1081 agcatcatcg ccaagaagga ggttcttctg gaacagcctg gcagggagga ggaaaacggt
     1141 tccgccccca agaccatcct gtaccgactg ggtgagggcg agtatggaat cttcaactca
     1201 gtcctgtttg acaacacctg ccctaccccc atcctgcaga agaaaccatc cacggagcag
     1261 cccctgtaca gcagcagcct atggggccca gtgatcgatg gctgtgactg catagctgag
     1321 ggcctgtggc tgccgcaact acatgtaggg gactggctgg tctttgagaa catgggcgcc
     1381 tacaccatgg gcatgggttc cctcctcggg ggtgcccaga cctgccgcat cacctatgcc
     1441 atgtcccggg tggcctggga agccctgcga gggcagctgc tgcctgcaga acaggacgag
     1501 gacgccgagg gcacgtgcag gcctctgtcc tgtggctggg agatcacaga caccttgtgc
     1561 atgcgccctg tcttcacccc ggcgagcatc atctttcagc cgcttcaact acccgtcaca
     1621 ccccggagtc ccggcggacg cggatttccg gcggcgtgac gtcacttccg tgtcagagag
     1681 cctcccaggc ttcgaggccc gtcttctggc gccctctgct tgagcggagg aggactttac
     1741 caaacagcga gaagagacag ccgagtccgt tggctgaagg acggacagac gccctccgcg
     1801 gcctccacca gtggaaaatc aaaccttcgc cgagggcggg cccccacgag caaggggtcc
     1861 tgttggcacg caggaggcag gcaagggggc taccgggccc ctgcccggct acaaaggccc
     1921 gcagtaacac cggaactggg cttttgccca ccagctactt ccgcttcccc ttacaaagta
     1981 ggagcatccc tgagtaacgg ggccagggag ctgtatcgat cttgggaggc tcgtccccgg
     2041 tgtcctcccc actcatccat ttcattccct acaggagaca cccgatgaat tcacgcagaa
     2101 aatcatgggc tttgaaagaa ttcttgcagg ccaaggtgtt tcacgtttta aaataataaa
     2161 gagtactcac tatgtgccat gccctgccct cgaccttgat tcgcactttt tcgtttaatc
     2221 cgcactaacc tgtgaagtgg atattatgac acagactccg actcctcagt gcctgtgttg
     2281 gaatcctggc tctgccagtt attacctgtg ttttctgtgc cacagttt
//
LOCUS       XM_032608514            2178 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus antizyme inhibitor 2 (AZIN2), transcript
            variant X2, mRNA.
ACCESSION   XM_032608514
VERSION     XM_032608514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2178
                     /gene="AZIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741637"
     CDS             64..1509
                     /gene="AZIN2"
                     /codon_start=1
                     /product="antizyme inhibitor 2 isoform X2"
                     /protein_id="XP_032464405.1"
                     /db_xref="GeneID:116741637"
                     /translation="MAGRLSEADFVMVEEGFSTRDLLEQLTLGASQATTEEVAAFFVA
                     DLGAVVRKHFCFLKCLPRVRPFYAVKCNNSPGVLKVLAELGLGFSCANKAEMELVQHI
                     GVPASKIIYGNPCKQIAHIKYAAKHGVRLLSFDNEMELAKVVKSHPSAKMVLCIATND
                     SHSRSRLSLKFGVSLKSCRQLFEDAKRNHIEVVGVSFHIGSGCPDPQAYAQSIADARL
                     VFEMGAELGHRMHILDLGGGFPGVEGAKVRFEEISSVINSALDLYFPEGCGVDILAKL
                     GRYYVTSAFTLAVSIIAKKEVLLEQPGREEENGSAPKTILYRLGEGEYGIFNSVLFDN
                     TCPTPILQKKPSTEQPLYSSSLWGPVIDGCDCIAEGLWLPQLHVGDWLVFENMGAYTM
                     GMGSLLGGAQTCRITYAMSRVAWEALRGQLLPAEQDEDAEGTCRPLSCGWEITDTLCM
                     RPVFTPASIIFQPLQLPVTPRSPGGRGFPAA"
     misc_feature    181..1251
                     /gene="AZIN2"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Ornithine Decarboxylase; Region: PLPDE_III_ODC;
                     cd00622"
                     /db_xref="CDD:143482"
     misc_feature    order(265..267,271..273,328..330,526..528,655..657,
                     664..666,772..777,886..897,1060..1062,1144..1146,
                     1231..1233)
                     /gene="AZIN2"
                     /note="active site"
                     /db_xref="CDD:143482"
     misc_feature    order(265..267,271..273,328..330,526..528,655..657,
                     664..666,772..777,886..897,1144..1146,1231..1233)
                     /gene="AZIN2"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(271..273,334..339,343..348,412..414,427..429,
                     466..468,475..477,487..489,568..576,937..939,943..948,
                     976..978,1015..1017,1021..1023,1030..1035,1057..1059,
                     1063..1065,1135..1137,1141..1143,1147..1149,1156..1158,
                     1243..1245,1249..1251)
                     /gene="AZIN2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(271..273,1144..1146)
                     /gene="AZIN2"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143482"
     misc_feature    order(1057..1062,1144..1149,1231..1233)
                     /gene="AZIN2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143482"
ORIGIN      
        1 gcatactttc taaggcaccg gaggcagcgg cagctccatc cagcccatcg gctcctccgc
       61 ggcatggctg gccgcctgag tgaagcggac ttcgtgatgg tggaggaggg cttcagcacc
      121 cgagacctgc tggagcagct cactctgggg gcctcacagg ccaccacgga agaggtcgct
      181 gccttctttg tggccgacct gggtgctgta gtgcgaaagc acttctgctt tctgaagtgc
      241 ctgccgcgag tccgaccctt ttacgctgtc aagtgcaaca acagcccggg tgtgctgaag
      301 gtcctggctg agctaggact gggcttcagc tgtgccaaca aggcagagat ggagttggtc
      361 cagcatattg gtgtccctgc cagtaagatc atctacggca acccctgtaa gcaaattgca
      421 cacatcaagt atgctgccaa gcatggggtc cggctgctga gctttgacaa cgagatggag
      481 ctggcaaagg tggtaaaaag ccaccccagt gccaagatgg ttctgtgcat tgccaccaat
      541 gactcccact cccggagccg cctgagcctc aagttcggag tgtcgctgaa atcctgcaga
      601 caactgtttg aagatgccaa gaggaaccac atagaggtgg tgggtgtgag ttttcacatt
      661 ggcagtggct gtcctgaccc tcaggcctac gctcagtcca tcgcagacgc ccggcttgtg
      721 tttgaaatgg gtgctgagct gggccacagg atgcacatcc tggaccttgg cggcggcttc
      781 cctggagtgg agggggccaa agtgagattc gaagagattt cttctgtgat caactcagcc
      841 ttggacctgt acttcccgga gggctgtggt gtggacatcc ttgccaagct ggggcgctac
      901 tatgtgacct cggccttcac cttggcagtc agcatcatcg ccaagaagga ggttcttctg
      961 gaacagcctg gcagggagga ggaaaacggt tccgccccca agaccatcct gtaccgactg
     1021 ggtgagggcg agtatggaat cttcaactca gtcctgtttg acaacacctg ccctaccccc
     1081 atcctgcaga agaaaccatc cacggagcag cccctgtaca gcagcagcct atggggccca
     1141 gtgatcgatg gctgtgactg catagctgag ggcctgtggc tgccgcaact acatgtaggg
     1201 gactggctgg tctttgagaa catgggcgcc tacaccatgg gcatgggttc cctcctcggg
     1261 ggtgcccaga cctgccgcat cacctatgcc atgtcccggg tggcctggga agccctgcga
     1321 gggcagctgc tgcctgcaga acaggacgag gacgccgagg gcacgtgcag gcctctgtcc
     1381 tgtggctggg agatcacaga caccttgtgc atgcgccctg tcttcacccc ggcgagcatc
     1441 atctttcagc cgcttcaact acccgtcaca ccccggagtc ccggcggacg cggatttccg
     1501 gcggcgtgac gtcacttccg tgtcagagag cctcccaggc ttcgaggccc gtcttctggc
     1561 gccctctgct tgagcggagg aggactttac caaacagcga gaagagacag ccgagtccgt
     1621 tggctgaagg acggacagac gccctccgcg gcctccacca gtggaaaatc aaaccttcgc
     1681 cgagggcggg cccccacgag caaggggtcc tgttggcacg caggaggcag gcaagggggc
     1741 taccgggccc ctgcccggct acaaaggccc gcagtaacac cggaactggg cttttgccca
     1801 ccagctactt ccgcttcccc ttacaaagta ggagcatccc tgagtaacgg ggccagggag
     1861 ctgtatcgat cttgggaggc tcgtccccgg tgtcctcccc actcatccat ttcattccct
     1921 acaggagaca cccgatgaat tcacgcagaa aatcatgggc tttgaaagaa ttcttgcagg
     1981 ccaaggtgtt tcacgtttta aaataataaa gagtactcac tatgtgccat gccctgccct
     2041 cgaccttgat tcgcactttt tcgtttaatc cgcactaacc tgtgaagtgg atattatgac
     2101 acagactccg actcctcagt gcctgtgttg gaatcctggc tctgccagtt attacctgtg
     2161 ttttctgtgc cacagttt
//
LOCUS       XM_032608523            5450 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus antizyme inhibitor 2 (AZIN2), transcript
            variant X3, mRNA.
ACCESSION   XM_032608523
VERSION     XM_032608523.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5450
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5450
                     /gene="AZIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741637"
     CDS             286..1689
                     /gene="AZIN2"
                     /codon_start=1
                     /product="antizyme inhibitor 2 isoform X3"
                     /protein_id="XP_032464414.1"
                     /db_xref="GeneID:116741637"
                     /translation="MAGRLSEADFVMVEEGFSTRDLLEQLTLGASQATTEEVAAFFVA
                     DLGAVVRKHFCFLKCLPRVRPFYAVKCNNSPGVLKVLAELGLGFSCANKAEMELVQHI
                     GVPASKIIYGNPCKQIAHIKYAAKHGVRLLSFDNEMELAKVVKSHPSAKGAACLLRMV
                     LCIATNDSHSRSRLSLKFGVSLKSCRQLFEDAKRNHIEVVGVSFHIGSGCPDPQAYAQ
                     SIADARLVFEMGAELGHRMHILDLGGGFPGVEGAKVRFEEISSVINSALDLYFPEGCG
                     VDILAKLGRYYVTSAFTLAVSIIAKKEVLLEQPGREEENGSAPKTILYRLGEGEYGIF
                     NSVLFDNTCPTPILQKKPSTEQPLYSSSLWGPVIDGCDCIAEGLWLPQLHVGDWLVFE
                     NMGAYTMGMGSLLGGAQTCRITYAMSRVAWEALRGQLLPAEQDEDAEGTCRPLSCGWE
                     ITDTLCMRPVFTPASIM"
     misc_feature    403..1494
                     /gene="AZIN2"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Ornithine Decarboxylase; Region: PLPDE_III_ODC;
                     cd00622"
                     /db_xref="CDD:143482"
     misc_feature    order(487..489,493..495,550..552,769..771,898..900,
                     907..909,1015..1020,1129..1140,1303..1305,1387..1389,
                     1474..1476)
                     /gene="AZIN2"
                     /note="active site"
                     /db_xref="CDD:143482"
     misc_feature    order(487..489,493..495,550..552,769..771,898..900,
                     907..909,1015..1020,1129..1140,1387..1389,1474..1476)
                     /gene="AZIN2"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(493..495,556..561,565..570,634..636,649..651,
                     688..690,697..699,709..711,811..819,1180..1182,1186..1191,
                     1219..1221,1258..1260,1264..1266,1273..1278,1300..1302,
                     1306..1308,1378..1380,1384..1386,1390..1392,1399..1401,
                     1486..1488,1492..1494)
                     /gene="AZIN2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(493..495,1387..1389)
                     /gene="AZIN2"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143482"
     misc_feature    order(1300..1305,1387..1392,1474..1476)
                     /gene="AZIN2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143482"
ORIGIN      
        1 gtggcgtcgg tggctgccgg gccctagctg ggggaagcta gcgagcggag gcgcggaggt
       61 gccgtttcac tcgctggggg gacctatggg tcgaagccgt gtaaatgcgt tttaagcagg
      121 ggcctcggct ccgcagctgc cactcctcct cggggtgctg cacaagtttc gaggtcaccg
      181 gcgacccccc ctagcagcgt gcctgactct ggccccgcga aggagcacgg ggcttggcac
      241 cggaggcagc ggcagctcca tccagcccat cggctcctcc gcggcatggc tggccgcctg
      301 agtgaagcgg acttcgtgat ggtggaggag ggcttcagca cccgagacct gctggagcag
      361 ctcactctgg gggcctcaca ggccaccacg gaagaggtcg ctgccttctt tgtggccgac
      421 ctgggtgctg tagtgcgaaa gcacttctgc tttctgaagt gcctgccgcg agtccgaccc
      481 ttttacgctg tcaagtgcaa caacagcccg ggtgtgctga aggtcctggc tgagctagga
      541 ctgggcttca gctgtgccaa caaggcagag atggagttgg tccagcatat tggtgtccct
      601 gccagtaaga tcatctacgg caacccctgt aagcaaattg cacacatcaa gtatgctgcc
      661 aagcatgggg tccggctgct gagctttgac aacgagatgg agctggcaaa ggtggtaaaa
      721 agccacccca gtgccaaagg tgctgcgtgt ctcctcagga tggttctgtg cattgccacc
      781 aatgactccc actcccggag ccgcctgagc ctcaagttcg gagtgtcgct gaaatcctgc
      841 agacaactgt ttgaagatgc caagaggaac cacatagagg tggtgggtgt gagttttcac
      901 attggcagtg gctgtcctga ccctcaggcc tacgctcagt ccatcgcaga cgcccggctt
      961 gtgtttgaaa tgggtgctga gctgggccac aggatgcaca tcctggacct tggcggcggc
     1021 ttccctggag tggagggggc caaagtgaga ttcgaagaga tttcttctgt gatcaactca
     1081 gccttggacc tgtacttccc ggagggctgt ggtgtggaca tccttgccaa gctggggcgc
     1141 tactatgtga cctcggcctt caccttggca gtcagcatca tcgccaagaa ggaggttctt
     1201 ctggaacagc ctggcaggga ggaggaaaac ggttccgccc ccaagaccat cctgtaccga
     1261 ctgggtgagg gcgagtatgg aatcttcaac tcagtcctgt ttgacaacac ctgccctacc
     1321 cccatcctgc agaagaaacc atccacggag cagcccctgt acagcagcag cctatggggc
     1381 ccagtgatcg atggctgtga ctgcatagct gagggcctgt ggctgccgca actacatgta
     1441 ggggactggc tggtctttga gaacatgggc gcctacacca tgggcatggg ttccctcctc
     1501 gggggtgccc agacctgccg catcacctat gccatgtccc gggtggcctg ggaagccctg
     1561 cgagggcagc tgctgcctgc agaacaggac gaggacgccg agggcacgtg caggcctctg
     1621 tcctgtggct gggagatcac agacaccttg tgcatgcgcc ctgtcttcac cccggcgagc
     1681 atcatgtgag cagggcccgt ccccccgccc ccggagaacc ccagcggggc cgcagagacg
     1741 cctctgggag cagaggggaa ggtggcgatc aggagtaccc tctggccagg actccagcgc
     1801 tcgctctgcc ggccccacgc tccccctgca gtgtttctgt cctgtaaata ggaccagtct
     1861 tacgctccct gtagttcaag tatgcaacat aaatcctgtc cctcctagtt gtgtctgcct
     1921 cctctgcagc gccaggggcc tggtcagcca ggtatggggg tgttcttggg ggtctccctt
     1981 ggtctgcttc ccacctttgt aaatatgaag cgaataaata tttaggttgt ttaatacgcc
     2041 agtggaacct ggcggttcag tccacgaagc agcctgggtg aggccagggc cgagacttcc
     2101 ccaccctact atgataaccc catgccctct gcttcggtcc tgacccgctg cagtgtgggc
     2161 acctcccact ggcacccagc ttctctaact catctctccc gtcttcacaa gcttccatgc
     2221 ctggcttcgt gaggaaaggg gagctgtcag ggtctggggt cggggtcacg gttgtctctg
     2281 tgcggcaccg gggctgcagc tcatggctgg tgaggggctt ctgtgtgaac ccaacagcca
     2341 gcttaagtcc cggcccaaag tggggaaaac tgaatatttg acaccgcttt tggaaattca
     2401 taccaaagat aaagagcaaa gaggtgggtc cctgggaggt tctgaggaga ccccataccc
     2461 ttcctctcct tgcaggtcag caaggcaatc agagtaatgc aaatatgtgc tggttggttt
     2521 tgcttattca ggcagtaatt gttagaacat ggttggccac agactactgc cacatccagt
     2581 gccaacggct ctgatgctca tgtctcctca gacactggca gttctcttaa ggacttcaca
     2641 ttgctagggt ctcaagctat gcaactgggg tgtgtgagcc gcttagcaaa ggagttcaga
     2701 ttttagagtt cccccagctg ctactggtga ccctaaagat ttttcttctg caattaaaaa
     2761 aaaattgaga tataattcac atgccttaaa attcaccctt tcaaagtgta gaattcggtg
     2821 gtttttagta tattcacaga gtttgtgcaa ccatcaccac tacctaattc tagaacatgt
     2881 taattacctc agtaagaaat cccatatcca ctagcagtca ctccccattc tcccctcccc
     2941 cagccctggc acccacgaat ctattttcca tctctgtgga cttgcctggt ctagacattt
     3001 cattgcgatt gtttttatat cttcacttga gcttctcact gggtaagcct agtacaatgt
     3061 ttttattttc ccacaccacc aagcaattct cagacaccag ccgggcgtcc tacaactcca
     3121 ctcaattctg acactaccta cgtaagagat agaataagat cccacaggtt aagggctcag
     3181 tcctacaaat cgaacaacag agcaaggagt ctgaacttaa ttctgcaggc agcaggcagc
     3241 cctatatgct tctggaacag aagcatgaca gggcctttga gaggataatt gaaagcgtat
     3301 tcaaaagggg ccgaggaaga cctagtgggc tggtggtagc atgcacttca ccctccttca
     3361 tcccccatcc tgtttaaggc aggcagcaag ggagcctgat gggggtccaa gttgtcatct
     3421 ctgtccaccc ctgctcagga gggggattgt ggctctctgg gtgtccccgg gtgtcccccg
     3481 cccccacccc cggccactca ttccagctgt aaagggacca tacggaaggc aacaggatgt
     3541 gagttcccag tcaacccttt gctccatttt aaaccctctt cctggcacct aggggatgag
     3601 tagctaagcc tgtgtaaact taacctacaa aattatctga tataggctcc taacagccag
     3661 agggatcttt ttgaaacacg aatccgatct tgtcaatcct ctgctgaaaa tcctccagtg
     3721 gattcccact gtgatgccaa tgaaagttaa attgcctgag atctccgccc actttccaac
     3781 ctcatctcct gccactcttc tcaccatgca ccggcctact ggcctctttt cagttcctca
     3841 cgtctactga gttctttcct gcttccagac ctttgccctt gctgttccct ctgcctaaat
     3901 agttcttctt ccagcttctc cagggctgac tcatccctat cttaaagggc tcacgttaaa
     3961 tgtcaccttc tcagaaaggc cttttctgta caccctattt aaagtggccc cccagctaat
     4021 tatgtggagt cacattttac agaaattaga ttctaaaggc agtatttaag gcaagaaaca
     4081 cacagtcaaa gttgtcactg aaaatccctg agaaagctat catattggag gcagtacatc
     4141 attcctctct gtgttcctct aacacaccag gcgcatttcc ttatgacccc aaatagctcc
     4201 atgatctttc tccctcacac cttcagatct ttgctcacgt taccttctca gtgaggccct
     4261 cctgaccacg ctctttacaa ctgtgatact cccaacccag tatcccatga tcccctccgt
     4321 agcctcacct tttactcctg caccccacag ctcatcatct gacatgcatt ttacttagac
     4381 ttaggctctt aagggcagag atatgtttgt ttactgccgt gttcctagtg cctaaagcac
     4441 tgcccacaaa caaatattca acaaataagt tgaatgaacc tttcaagtct cagcttgcgt
     4501 atctcccttt tctcttactc tctgcctgga tattgcacct ctgtgctttc acagcgtgct
     4561 gcatttaccc atattaaaga actgttgatt gcaatgtatt gtaatctttc tacacgtctc
     4621 cccgcaaatc tgttaattcc acaaagagag ggaatacttc tcctacttgc cagtgtcatc
     4681 tggagcctgg gtttgtgttt agcacagagt aggtgcttag tgtcttcgaa taaactagtc
     4741 ttggaggatg gtggcggggg ggggttaccc ctgaacctca aggcaggggt atctgatccc
     4801 tactcctcag ctcctgaaca gcagcctaga tcctgcgaag ggcaggccac taactggaac
     4861 gagctggggt cgctgcaggc ttccagggtt gcacccagga ggggcgcggg tccacacact
     4921 agtgagcctt aagtggggag gcatacagga tgtctcaaaa gctctttctg ctcttccact
     4981 cagctgggtg accgtgaggt aggattgcca tacaaaatat gggacgccca gttaaatctg
     5041 aattcagaaa acgacggcta ctttttcagt aaacgtatga cccatgacta ttaggcgtat
     5101 ccttatacta aaacactgtt gttcccctga acttcaactt taactgggcg tcctgaattt
     5161 tagctgctaa atccggcaac cctaccctgt aagtccctgt ctctctctgg gttcgtttac
     5221 cccatctgtg caatgcgggt attcctgtga cacttgcctc agggactcct caggcggagc
     5281 aaaccacccc aaggccgttc ctccgctaaa aggagtcgtg tgcgaagcgc gctggtctcg
     5341 ggagaggttc tcgctgggtg aatatgaaca ggcctctgtc tccaggggct cacttttctc
     5401 atctgagcct ccgagcctaa ccagcgtgga aacgatgccc tcaaacacct
//
LOCUS       XM_032608533            2049 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus antizyme inhibitor 2 (AZIN2), transcript
            variant X4, mRNA.
ACCESSION   XM_032608533
VERSION     XM_032608533.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2049
                     /gene="AZIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 20 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741637"
     CDS             319..1701
                     /gene="AZIN2"
                     /codon_start=1
                     /product="antizyme inhibitor 2 isoform X4"
                     /protein_id="XP_032464424.1"
                     /db_xref="GeneID:116741637"
                     /translation="MAGRLSEADFVMVEEGFSTRDLLEQLTLGASQATTEEVAAFFVA
                     DLGAVVRKHFCFLKCLPRVRPFYAVKCNNSPGVLKVLAELGLGFSCANKAEMELVQHI
                     GVPASKIIYGNPCKQIAHIKYAAKHGVRLLSFDNEMELAKVVKSHPSAKMVLCIATND
                     SHSRSRLSLKFGVSLKSCRQLFEDAKRNHIEVVGVSFHIGSGCPDPQAYAQSIADARL
                     VFEMGAELGHRMHILDLGGGFPGVEGAKVRFEEISSVINSALDLYFPEGCGVDILAKL
                     GRYYVTSAFTLAVSIIAKKEVLLEQPGREEENGSAPKTILYRLGEGEYGIFNSVLFDN
                     TCPTPILQKKPSTEQPLYSSSLWGPVIDGCDCIAEGLWLPQLHVGDWLVFENMGAYTM
                     GMGSLLGGAQTCRITYAMSRVAWEALRGQLLPAEQDEDAEGTCRPLSCGWEITDTLCM
                     RPVFTPASIM"
     misc_feature    436..1506
                     /gene="AZIN2"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Ornithine Decarboxylase; Region: PLPDE_III_ODC;
                     cd00622"
                     /db_xref="CDD:143482"
     misc_feature    order(520..522,526..528,583..585,781..783,910..912,
                     919..921,1027..1032,1141..1152,1315..1317,1399..1401,
                     1486..1488)
                     /gene="AZIN2"
                     /note="active site"
                     /db_xref="CDD:143482"
     misc_feature    order(520..522,526..528,583..585,781..783,910..912,
                     919..921,1027..1032,1141..1152,1399..1401,1486..1488)
                     /gene="AZIN2"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(526..528,589..594,598..603,667..669,682..684,
                     721..723,730..732,742..744,823..831,1192..1194,1198..1203,
                     1231..1233,1270..1272,1276..1278,1285..1290,1312..1314,
                     1318..1320,1390..1392,1396..1398,1402..1404,1411..1413,
                     1498..1500,1504..1506)
                     /gene="AZIN2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(526..528,1399..1401)
                     /gene="AZIN2"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143482"
     misc_feature    order(1312..1317,1399..1404,1486..1488)
                     /gene="AZIN2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143482"
ORIGIN      
        1 aaggcgtggc gtggcgtcgg tggctgccgg gccctagctg ggggaagcta gcgagcggag
       61 gcgcggaggt gccgtttcac tcgctggggg gacctatggg tcgaagccgt gtaaatgcgt
      121 tttaagcagg ggcctcggct ccgcagctgc cactcctcct cggggtgctg cacaagtttc
      181 gaggtcaccg gcgacccccc ctagcagcgt gcctgactct ggccccgcga aggagcacgg
      241 ggcttgaagt gtgttgcata ctttctaagg caccggaggc agcggcagct ccatccagcc
      301 catcggctcc tccgcggcat ggctggccgc ctgagtgaag cggacttcgt gatggtggag
      361 gagggcttca gcacccgaga cctgctggag cagctcactc tgggggcctc acaggccacc
      421 acggaagagg tcgctgcctt ctttgtggcc gacctgggtg ctgtagtgcg aaagcacttc
      481 tgctttctga agtgcctgcc gcgagtccga cccttttacg ctgtcaagtg caacaacagc
      541 ccgggtgtgc tgaaggtcct ggctgagcta ggactgggct tcagctgtgc caacaaggca
      601 gagatggagt tggtccagca tattggtgtc cctgccagta agatcatcta cggcaacccc
      661 tgtaagcaaa ttgcacacat caagtatgct gccaagcatg gggtccggct gctgagcttt
      721 gacaacgaga tggagctggc aaaggtggta aaaagccacc ccagtgccaa gatggttctg
      781 tgcattgcca ccaatgactc ccactcccgg agccgcctga gcctcaagtt cggagtgtcg
      841 ctgaaatcct gcagacaact gtttgaagat gccaagagga accacataga ggtggtgggt
      901 gtgagttttc acattggcag tggctgtcct gaccctcagg cctacgctca gtccatcgca
      961 gacgcccggc ttgtgtttga aatgggtgct gagctgggcc acaggatgca catcctggac
     1021 cttggcggcg gcttccctgg agtggagggg gccaaagtga gattcgaaga gatttcttct
     1081 gtgatcaact cagccttgga cctgtacttc ccggagggct gtggtgtgga catccttgcc
     1141 aagctggggc gctactatgt gacctcggcc ttcaccttgg cagtcagcat catcgccaag
     1201 aaggaggttc ttctggaaca gcctggcagg gaggaggaaa acggttccgc ccccaagacc
     1261 atcctgtacc gactgggtga gggcgagtat ggaatcttca actcagtcct gtttgacaac
     1321 acctgcccta cccccatcct gcagaagaaa ccatccacgg agcagcccct gtacagcagc
     1381 agcctatggg gcccagtgat cgatggctgt gactgcatag ctgagggcct gtggctgccg
     1441 caactacatg taggggactg gctggtcttt gagaacatgg gcgcctacac catgggcatg
     1501 ggttccctcc tcgggggtgc ccagacctgc cgcatcacct atgccatgtc ccgggtggcc
     1561 tgggaagccc tgcgagggca gctgctgcct gcagaacagg acgaggacgc cgagggcacg
     1621 tgcaggcctc tgtcctgtgg ctgggagatc acagacacct tgtgcatgcg ccctgtcttc
     1681 accccggcga gcatcatgtg agcagggccc gtccccccgc ccccggagaa ccccagcggg
     1741 gccgcagaga cgcctctggg agcagagggg aaggtggcga tcaggagtac cctctggcca
     1801 ggactccagc gctcgctctg ccggccccac gctccccctg cagtgtttct gtcctgtaaa
     1861 taggaccagt cttacgctcc ctgtagttca agtatgcaac ataaatcctg tccctcctag
     1921 ttgtgtctgc ctcctctgca gcgccagggg cctggtcagc caggtatggg ggtgttcttg
     1981 ggggtctccc ttggtctgct tcccaccttt gtaaatatga agcgaataaa tatttaggtt
     2041 gtttaatac
//
LOCUS       XM_032608540            1890 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus antizyme inhibitor 2 (AZIN2), transcript
            variant X5, mRNA.
ACCESSION   XM_032608540
VERSION     XM_032608540.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1890
                     /gene="AZIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 20 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741637"
     CDS             291..1673
                     /gene="AZIN2"
                     /codon_start=1
                     /product="antizyme inhibitor 2 isoform X4"
                     /protein_id="XP_032464431.1"
                     /db_xref="GeneID:116741637"
                     /translation="MAGRLSEADFVMVEEGFSTRDLLEQLTLGASQATTEEVAAFFVA
                     DLGAVVRKHFCFLKCLPRVRPFYAVKCNNSPGVLKVLAELGLGFSCANKAEMELVQHI
                     GVPASKIIYGNPCKQIAHIKYAAKHGVRLLSFDNEMELAKVVKSHPSAKMVLCIATND
                     SHSRSRLSLKFGVSLKSCRQLFEDAKRNHIEVVGVSFHIGSGCPDPQAYAQSIADARL
                     VFEMGAELGHRMHILDLGGGFPGVEGAKVRFEEISSVINSALDLYFPEGCGVDILAKL
                     GRYYVTSAFTLAVSIIAKKEVLLEQPGREEENGSAPKTILYRLGEGEYGIFNSVLFDN
                     TCPTPILQKKPSTEQPLYSSSLWGPVIDGCDCIAEGLWLPQLHVGDWLVFENMGAYTM
                     GMGSLLGGAQTCRITYAMSRVAWEALRGQLLPAEQDEDAEGTCRPLSCGWEITDTLCM
                     RPVFTPASIM"
     misc_feature    408..1478
                     /gene="AZIN2"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Ornithine Decarboxylase; Region: PLPDE_III_ODC;
                     cd00622"
                     /db_xref="CDD:143482"
     misc_feature    order(492..494,498..500,555..557,753..755,882..884,
                     891..893,999..1004,1113..1124,1287..1289,1371..1373,
                     1458..1460)
                     /gene="AZIN2"
                     /note="active site"
                     /db_xref="CDD:143482"
     misc_feature    order(492..494,498..500,555..557,753..755,882..884,
                     891..893,999..1004,1113..1124,1371..1373,1458..1460)
                     /gene="AZIN2"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(498..500,561..566,570..575,639..641,654..656,
                     693..695,702..704,714..716,795..803,1164..1166,1170..1175,
                     1203..1205,1242..1244,1248..1250,1257..1262,1284..1286,
                     1290..1292,1362..1364,1368..1370,1374..1376,1383..1385,
                     1470..1472,1476..1478)
                     /gene="AZIN2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(498..500,1371..1373)
                     /gene="AZIN2"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143482"
     misc_feature    order(1284..1289,1371..1376,1458..1460)
                     /gene="AZIN2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143482"
ORIGIN      
        1 gtggcgtggc gtcggtggct gccgggccct agctggggga agctagcgag cggaggcgcg
       61 gaggtgccgt ttcactcgct ggggggacct atgggtcgaa gccgtgtaaa tgcgttttaa
      121 gcaggggcct cggctccgca gctgccactc ctcctcgggg tgctgcacaa gtttcgaggt
      181 caccggcgac cccccctagc agcgtgcctg actctggccc cgcgaaggag cacggggctt
      241 ggcaccggag gcagcggcag ctccatccag cccatcggct cctccgcggc atggctggcc
      301 gcctgagtga agcggacttc gtgatggtgg aggagggctt cagcacccga gacctgctgg
      361 agcagctcac tctgggggcc tcacaggcca ccacggaaga ggtcgctgcc ttctttgtgg
      421 ccgacctggg tgctgtagtg cgaaagcact tctgctttct gaagtgcctg ccgcgagtcc
      481 gaccctttta cgctgtcaag tgcaacaaca gcccgggtgt gctgaaggtc ctggctgagc
      541 taggactggg cttcagctgt gccaacaagg cagagatgga gttggtccag catattggtg
      601 tccctgccag taagatcatc tacggcaacc cctgtaagca aattgcacac atcaagtatg
      661 ctgccaagca tggggtccgg ctgctgagct ttgacaacga gatggagctg gcaaaggtgg
      721 taaaaagcca ccccagtgcc aagatggttc tgtgcattgc caccaatgac tcccactccc
      781 ggagccgcct gagcctcaag ttcggagtgt cgctgaaatc ctgcagacaa ctgtttgaag
      841 atgccaagag gaaccacata gaggtggtgg gtgtgagttt tcacattggc agtggctgtc
      901 ctgaccctca ggcctacgct cagtccatcg cagacgcccg gcttgtgttt gaaatgggtg
      961 ctgagctggg ccacaggatg cacatcctgg accttggcgg cggcttccct ggagtggagg
     1021 gggccaaagt gagattcgaa gagatttctt ctgtgatcaa ctcagccttg gacctgtact
     1081 tcccggaggg ctgtggtgtg gacatccttg ccaagctggg gcgctactat gtgacctcgg
     1141 ccttcacctt ggcagtcagc atcatcgcca agaaggaggt tcttctggaa cagcctggca
     1201 gggaggagga aaacggttcc gcccccaaga ccatcctgta ccgactgggt gagggcgagt
     1261 atggaatctt caactcagtc ctgtttgaca acacctgccc tacccccatc ctgcagaaga
     1321 aaccatccac ggagcagccc ctgtacagca gcagcctatg gggcccagtg atcgatggct
     1381 gtgactgcat agctgagggc ctgtggctgc cgcaactaca tgtaggggac tggctggtct
     1441 ttgagaacat gggcgcctac accatgggca tgggttccct cctcgggggt gcccagacct
     1501 gccgcatcac ctatgccatg tcccgggtgg cctgggaagc cctgcgaggg cagctgctgc
     1561 ctgcagaaca ggacgaggac gccgagggca cgtgcaggcc tctgtcctgt ggctgggaga
     1621 tcacagacac cttgtgcatg cgccctgtct tcaccccggc gagcatcatg tgagcagggc
     1681 ccgtcccccc gcccccggag aaccccagcg gggccgcaga gacgcctctg ggagcagagg
     1741 ggaaggtggc gatcaggagt accctctggc caggactcca gcgctcgctc tgccggcccc
     1801 acgctccccc tgcagtgttt ctgtcctgta aataggacca gtcttacgct ccctgtagtt
     1861 caagtatgca acataaatcc tgtccctcct
//
LOCUS       XM_032608548            1920 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus antizyme inhibitor 2 (AZIN2), transcript
            variant X6, mRNA.
ACCESSION   XM_032608548
VERSION     XM_032608548.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1920
                     /gene="AZIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116741637"
     CDS             70..1251
                     /gene="AZIN2"
                     /codon_start=1
                     /product="antizyme inhibitor 2 isoform X5"
                     /protein_id="XP_032464439.1"
                     /db_xref="GeneID:116741637"
                     /translation="MELVQHIGVPASKIIYGNPCKQIAHIKYAAKHGVRLLSFDNEME
                     LAKVVKSHPSAKGAACLLRMVLCIATNDSHSRSRLSLKFGVSLKSCRQLFEDAKRNHI
                     EVVGVSFHIGSGCPDPQAYAQSIADARLVFEMGAELGHRMHILDLGGGFPGVEGAKVR
                     FEEISSVINSALDLYFPEGCGVDILAKLGRYYVTSAFTLAVSIIAKKEVLLEQPGREE
                     ENGSAPKTILYRLGEGEYGIFNSVLFDNTCPTPILQKKPSTEQPLYSSSLWGPVIDGC
                     DCIAEGLWLPQLHVGDWLVFENMGAYTMGMGSLLGGAQTCRITYAMSRVAWEALRGQL
                     LPAEQDEDAEGTCRPLSCGWEITDTLCMRPVFTPASIIFQPLQLPVTPRSPGGRGFPA
                     A"
     misc_feature    70..993
                     /gene="AZIN2"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Ornithine Decarboxylase; Region: PLPDE_III_ODC;
                     cd00622"
                     /db_xref="CDD:143482"
     misc_feature    order(268..270,397..399,406..408,514..519,628..639,
                     802..804,886..888,973..975)
                     /gene="AZIN2"
                     /note="active site"
                     /db_xref="CDD:143482"
     misc_feature    order(799..804,886..891,973..975)
                     /gene="AZIN2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143482"
ORIGIN      
        1 tgggcttcag ctgtgccaac aaggctctgg tgcttcctca ccaccacctt tgggatccca
       61 caggcagaga tggagttggt ccagcatatt ggtgtccctg ccagtaagat catctacggc
      121 aacccctgta agcaaattgc acacatcaag tatgctgcca agcatggggt ccggctgctg
      181 agctttgaca acgagatgga gctggcaaag gtggtaaaaa gccaccccag tgccaaaggt
      241 gctgcgtgtc tcctcaggat ggttctgtgc attgccacca atgactccca ctcccggagc
      301 cgcctgagcc tcaagttcgg agtgtcgctg aaatcctgca gacaactgtt tgaagatgcc
      361 aagaggaacc acatagaggt ggtgggtgtg agttttcaca ttggcagtgg ctgtcctgac
      421 cctcaggcct acgctcagtc catcgcagac gcccggcttg tgtttgaaat gggtgctgag
      481 ctgggccaca ggatgcacat cctggacctt ggcggcggct tccctggagt ggagggggcc
      541 aaagtgagat tcgaagagat ttcttctgtg atcaactcag ccttggacct gtacttcccg
      601 gagggctgtg gtgtggacat ccttgccaag ctggggcgct actatgtgac ctcggccttc
      661 accttggcag tcagcatcat cgccaagaag gaggttcttc tggaacagcc tggcagggag
      721 gaggaaaacg gttccgcccc caagaccatc ctgtaccgac tgggtgaggg cgagtatgga
      781 atcttcaact cagtcctgtt tgacaacacc tgccctaccc ccatcctgca gaagaaacca
      841 tccacggagc agcccctgta cagcagcagc ctatggggcc cagtgatcga tggctgtgac
      901 tgcatagctg agggcctgtg gctgccgcaa ctacatgtag gggactggct ggtctttgag
      961 aacatgggcg cctacaccat gggcatgggt tccctcctcg ggggtgccca gacctgccgc
     1021 atcacctatg ccatgtcccg ggtggcctgg gaagccctgc gagggcagct gctgcctgca
     1081 gaacaggacg aggacgccga gggcacgtgc aggcctctgt cctgtggctg ggagatcaca
     1141 gacaccttgt gcatgcgccc tgtcttcacc ccggcgagca tcatctttca gccgcttcaa
     1201 ctacccgtca caccccggag tcccggcgga cgcggatttc cggcggcgtg acgtcacttc
     1261 cgtgtcagag agcctcccag gcttcgaggc ccgtcttctg gcgccctctg cttgagcgga
     1321 ggaggacttt accaaacagc gagaagagac agccgagtcc gttggctgaa ggacggacag
     1381 acgccctccg cggcctccac cagtggaaaa tcaaaccttc gccgagggcg ggcccccacg
     1441 agcaaggggt cctgttggca cgcaggaggc aggcaagggg gctaccgggc ccctgcccgg
     1501 ctacaaaggc ccgcagtaac accggaactg ggcttttgcc caccagctac ttccgcttcc
     1561 ccttacaaag taggagcatc cctgagtaac ggggccaggg agctgtatcg atcttgggag
     1621 gctcgtcccc ggtgtcctcc ccactcatcc atttcattcc ctacaggaga cacccgatga
     1681 attcacgcag aaaatcatgg gctttgaaag aattcttgca ggccaaggtg tttcacgttt
     1741 taaaataata aagagtactc actatgtgcc atgccctgcc ctcgaccttg attcgcactt
     1801 tttcgtttaa tccgcactaa cctgtgaagt ggatattatg acacagactc cgactcctca
     1861 gtgcctgtgt tggaatcctg gctctgccag ttattacctg tgttttctgt gccacagttt
//
LOCUS       XM_032608557            2394 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus antizyme inhibitor 2 (AZIN2), transcript
            variant X7, mRNA.
ACCESSION   XM_032608557
VERSION     XM_032608557.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2394
                     /gene="AZIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116741637"
     CDS             259..1725
                     /gene="AZIN2"
                     /codon_start=1
                     /product="antizyme inhibitor 2 isoform X1"
                     /protein_id="XP_032464448.1"
                     /db_xref="GeneID:116741637"
                     /translation="MAGRLSEADFVMVEEGFSTRDLLEQLTLGASQATTEEVAAFFVA
                     DLGAVVRKHFCFLKCLPRVRPFYAVKCNNSPGVLKVLAELGLGFSCANKAEMELVQHI
                     GVPASKIIYGNPCKQIAHIKYAAKHGVRLLSFDNEMELAKVVKSHPSAKGAACLLRMV
                     LCIATNDSHSRSRLSLKFGVSLKSCRQLFEDAKRNHIEVVGVSFHIGSGCPDPQAYAQ
                     SIADARLVFEMGAELGHRMHILDLGGGFPGVEGAKVRFEEISSVINSALDLYFPEGCG
                     VDILAKLGRYYVTSAFTLAVSIIAKKEVLLEQPGREEENGSAPKTILYRLGEGEYGIF
                     NSVLFDNTCPTPILQKKPSTEQPLYSSSLWGPVIDGCDCIAEGLWLPQLHVGDWLVFE
                     NMGAYTMGMGSLLGGAQTCRITYAMSRVAWEALRGQLLPAEQDEDAEGTCRPLSCGWE
                     ITDTLCMRPVFTPASIIFQPLQLPVTPRSPGGRGFPAA"
     misc_feature    376..1467
                     /gene="AZIN2"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Ornithine Decarboxylase; Region: PLPDE_III_ODC;
                     cd00622"
                     /db_xref="CDD:143482"
     misc_feature    order(460..462,466..468,523..525,742..744,871..873,
                     880..882,988..993,1102..1113,1276..1278,1360..1362,
                     1447..1449)
                     /gene="AZIN2"
                     /note="active site"
                     /db_xref="CDD:143482"
     misc_feature    order(460..462,466..468,523..525,742..744,871..873,
                     880..882,988..993,1102..1113,1360..1362,1447..1449)
                     /gene="AZIN2"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(466..468,529..534,538..543,607..609,622..624,
                     661..663,670..672,682..684,784..792,1153..1155,1159..1164,
                     1192..1194,1231..1233,1237..1239,1246..1251,1273..1275,
                     1279..1281,1351..1353,1357..1359,1363..1365,1372..1374,
                     1459..1461,1465..1467)
                     /gene="AZIN2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143482"
     misc_feature    order(466..468,1360..1362)
                     /gene="AZIN2"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143482"
     misc_feature    order(1273..1278,1360..1365,1447..1449)
                     /gene="AZIN2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143482"
ORIGIN      
        1 ctgggggaag ctagcgagcg gaggcgcgga ggtgccgttt cactcgctgg ggggacctat
       61 gggtcgaagc cgtgtaaatg cgttttaagc aggggcctcg gctccgcagc tgccactcct
      121 cctcggggtg ctgcacaagt ttcgaggtca ccggcgaccc cccctagcag cgtgcctgac
      181 tctggccccg cgaaggagca cggggcttgg caccggaggc agcggcagct ccatccagcc
      241 catcggctcc tccgcggcat ggctggccgc ctgagtgaag cggacttcgt gatggtggag
      301 gagggcttca gcacccgaga cctgctggag cagctcactc tgggggcctc acaggccacc
      361 acggaagagg tcgctgcctt ctttgtggcc gacctgggtg ctgtagtgcg aaagcacttc
      421 tgctttctga agtgcctgcc gcgagtccga cccttttacg ctgtcaagtg caacaacagc
      481 ccgggtgtgc tgaaggtcct ggctgagcta ggactgggct tcagctgtgc caacaaggca
      541 gagatggagt tggtccagca tattggtgtc cctgccagta agatcatcta cggcaacccc
      601 tgtaagcaaa ttgcacacat caagtatgct gccaagcatg gggtccggct gctgagcttt
      661 gacaacgaga tggagctggc aaaggtggta aaaagccacc ccagtgccaa aggtgctgcg
      721 tgtctcctca ggatggttct gtgcattgcc accaatgact cccactcccg gagccgcctg
      781 agcctcaagt tcggagtgtc gctgaaatcc tgcagacaac tgtttgaaga tgccaagagg
      841 aaccacatag aggtggtggg tgtgagtttt cacattggca gtggctgtcc tgaccctcag
      901 gcctacgctc agtccatcgc agacgcccgg cttgtgtttg aaatgggtgc tgagctgggc
      961 cacaggatgc acatcctgga ccttggcggc ggcttccctg gagtggaggg ggccaaagtg
     1021 agattcgaag agatttcttc tgtgatcaac tcagccttgg acctgtactt cccggagggc
     1081 tgtggtgtgg acatccttgc caagctgggg cgctactatg tgacctcggc cttcaccttg
     1141 gcagtcagca tcatcgccaa gaaggaggtt cttctggaac agcctggcag ggaggaggaa
     1201 aacggttccg cccccaagac catcctgtac cgactgggtg agggcgagta tggaatcttc
     1261 aactcagtcc tgtttgacaa cacctgccct acccccatcc tgcagaagaa accatccacg
     1321 gagcagcccc tgtacagcag cagcctatgg ggcccagtga tcgatggctg tgactgcata
     1381 gctgagggcc tgtggctgcc gcaactacat gtaggggact ggctggtctt tgagaacatg
     1441 ggcgcctaca ccatgggcat gggttccctc ctcgggggtg cccagacctg ccgcatcacc
     1501 tatgccatgt cccgggtggc ctgggaagcc ctgcgagggc agctgctgcc tgcagaacag
     1561 gacgaggacg ccgagggcac gtgcaggcct ctgtcctgtg gctgggagat cacagacacc
     1621 ttgtgcatgc gccctgtctt caccccggcg agcatcatct ttcagccgct tcaactaccc
     1681 gtcacacccc ggagtcccgg cggacgcgga tttccggcgg cgtgacgtca cttccgtgtc
     1741 agagagcctc ccaggcttcg aggcccgtct tctggcgccc tctgcttgag cggaggagga
     1801 ctttaccaaa cagcgagaag agacagccga gtccgttggc tgaaggacgg acagacgccc
     1861 tccgcggcct ccaccagtgg aaaatcaaac cttcgccgag ggcgggcccc cacgagcaag
     1921 gggtcctgtt ggcacgcagg aggcaggcaa gggggctacc gggcccctgc ccggctacaa
     1981 aggcccgcag taacaccgga actgggcttt tgcccaccag ctacttccgc ttccccttac
     2041 aaagtaggag catccctgag taacggggcc agggagctgt atcgatcttg ggaggctcgt
     2101 ccccggtgtc ctccccactc atccatttca ttccctacag gagacacccg atgaattcac
     2161 gcagaaaatc atgggctttg aaagaattct tgcaggccaa ggtgtttcac gttttaaaat
     2221 aataaagagt actcactatg tgccatgccc tgccctcgac cttgattcgc actttttcgt
     2281 ttaatccgca ctaacctgtg aagtggatat tatgacacag actccgactc ctcagtgcct
     2341 gtgttggaat cctggctctg ccagttatta cctgtgtttt ctgtgccaca gttt
//
LOCUS       XM_032608567            1736 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus antizyme inhibitor 2 (AZIN2), transcript
            variant X8, mRNA.
ACCESSION   XM_032608567
VERSION     XM_032608567.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1736
                     /gene="AZIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741637"
     CDS             422..1519
                     /gene="AZIN2"
                     /codon_start=1
                     /product="antizyme inhibitor 2 isoform X6"
                     /protein_id="XP_032464458.1"
                     /db_xref="GeneID:116741637"
                     /translation="MELVQHIGVPASKIIYGNPCKQIAHIKYAAKHGVRLLSFDNEME
                     LAKVVKSHPSAKMVLCIATNDSHSRSRLSLKFGVSLKSCRQLFEDAKRNHIEVVGVSF
                     HIGSGCPDPQAYAQSIADARLVFEMGAELGHRMHILDLGGGFPGVEGAKVRFEEISSV
                     INSALDLYFPEGCGVDILAKLGRYYVTSAFTLAVSIIAKKEVLLEQPGREEENGSAPK
                     TILYRLGEGEYGIFNSVLFDNTCPTPILQKKPSTEQPLYSSSLWGPVIDGCDCIAEGL
                     WLPQLHVGDWLVFENMGAYTMGMGSLLGGAQTCRITYAMSRVAWEALRGQLLPAEQDE
                     DAEGTCRPLSCGWEITDTLCMRPVFTPASIM"
     misc_feature    422..1324
                     /gene="AZIN2"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Ornithine Decarboxylase; Region: PLPDE_III_ODC;
                     cd00622"
                     /db_xref="CDD:143482"
     misc_feature    order(599..601,728..730,737..739,845..850,959..970,
                     1133..1135,1217..1219,1304..1306)
                     /gene="AZIN2"
                     /note="active site"
                     /db_xref="CDD:143482"
     misc_feature    order(1130..1135,1217..1222,1304..1306)
                     /gene="AZIN2"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143482"
ORIGIN      
        1 gtggcgtggc gtcggtggct gccgggccct agctggggga agctagcgag cggaggcgcg
       61 gaggtgccgt ttcactcgct ggggggacct atgggtcgaa gccgtgtaaa tgcgttttaa
      121 gcaggggcct cggctccgca gctgccactc ctcctcgggg tgctgcacaa gtttcgaggt
      181 caccggcgac cccccctagc agcgtgcctg actctggccc cgcgaaggag cacggggctt
      241 ggaagaggtc gctgccttct ttgtggccga cctgggtgct gtagtgcgaa agcacttctg
      301 ctttctgaag tgcctgccgc gagtccgacc cttttacgct gtcaagtgca acaacagccc
      361 gggtgtgctg aaggtcctgg ctgagctagg actgggcttc agctgtgcca acaaggcaga
      421 gatggagttg gtccagcata ttggtgtccc tgccagtaag atcatctacg gcaacccctg
      481 taagcaaatt gcacacatca agtatgctgc caagcatggg gtccggctgc tgagctttga
      541 caacgagatg gagctggcaa aggtggtaaa aagccacccc agtgccaaga tggttctgtg
      601 cattgccacc aatgactccc actcccggag ccgcctgagc ctcaagttcg gagtgtcgct
      661 gaaatcctgc agacaactgt ttgaagatgc caagaggaac cacatagagg tggtgggtgt
      721 gagttttcac attggcagtg gctgtcctga ccctcaggcc tacgctcagt ccatcgcaga
      781 cgcccggctt gtgtttgaaa tgggtgctga gctgggccac aggatgcaca tcctggacct
      841 tggcggcggc ttccctggag tggagggggc caaagtgaga ttcgaagaga tttcttctgt
      901 gatcaactca gccttggacc tgtacttccc ggagggctgt ggtgtggaca tccttgccaa
      961 gctggggcgc tactatgtga cctcggcctt caccttggca gtcagcatca tcgccaagaa
     1021 ggaggttctt ctggaacagc ctggcaggga ggaggaaaac ggttccgccc ccaagaccat
     1081 cctgtaccga ctgggtgagg gcgagtatgg aatcttcaac tcagtcctgt ttgacaacac
     1141 ctgccctacc cccatcctgc agaagaaacc atccacggag cagcccctgt acagcagcag
     1201 cctatggggc ccagtgatcg atggctgtga ctgcatagct gagggcctgt ggctgccgca
     1261 actacatgta ggggactggc tggtctttga gaacatgggc gcctacacca tgggcatggg
     1321 ttccctcctc gggggtgccc agacctgccg catcacctat gccatgtccc gggtggcctg
     1381 ggaagccctg cgagggcagc tgctgcctgc agaacaggac gaggacgccg agggcacgtg
     1441 caggcctctg tcctgtggct gggagatcac agacaccttg tgcatgcgcc ctgtcttcac
     1501 cccggcgagc atcatgtgag cagggcccgt ccccccgccc ccggagaacc ccagcggggc
     1561 cgcagagacg cctctgggag cagaggggaa ggtggcgatc aggagtaccc tctggccagg
     1621 actccagcgc tcgctctgcc ggccccacgc tccccctgca gtgtttctgt cctgtaaata
     1681 ggaccagtct tacgctccct gtagttcaag tatgcaacat aaatcctgtc cctcct
//
LOCUS       XM_032608580            2550 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ethanolamine kinase 2 (ETNK2), transcript
            variant X1, mRNA.
ACCESSION   XM_032608580
VERSION     XM_032608580.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2550
                     /gene="ETNK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741668"
     CDS             254..1414
                     /gene="ETNK2"
                     /codon_start=1
                     /product="ethanolamine kinase 2 isoform X1"
                     /protein_id="XP_032464471.1"
                     /db_xref="GeneID:116741668"
                     /translation="MAVPPSAPLPCSPFYLRRQAPCPQCSWGMEEKAAAGAGCREPPG
                     PPRAAAVPCFGISVDQDDILPGALRLIRELRPHWKPQQVRTKRFTDGITNKLVACYVE
                     DDMQDCVLVRVYGERTELLVDRENEVRNFQLLRAHGCAPKLYCTFQNGLCYEYMRGMA
                     LGPEHIREPRLFRLIALEMAKIHTIHANGSLPKPILWHKMHSYFTLVKNEINPSLSAD
                     VPKVEVLERELAWLKEHLPQLDSPVVFCHNDLLCKNIIYDSTKGHVRFIDYEYAGYNY
                     QAFDIGNHFNEFAGVNEVDYCWYPARETQLQWLRYYLQAQKGMAVTPREVERLYVQVN
                     KFALASHFFWALWALIQSQFSTIDFNFLRYAVIRFNQYFKVKPQVLALEMPK"
     misc_feature    500..1378
                     /gene="ETNK2"
                     /note="Euykaryotic Ethanolamine kinase; Region: ETNK_euk;
                     cd05157"
                     /db_xref="CDD:270706"
     misc_feature    order(518..520,524..526,530..535,539..541,581..583,
                     587..589,674..676,710..721,725..733,998..1000,1004..1006,
                     1010..1015,1019..1021,1052..1057,1064..1066,1112..1114,
                     1127..1129)
                     /gene="ETNK2"
                     /note="putative active site [active]"
                     /db_xref="CDD:270706"
     misc_feature    order(518..520,533..535,539..541,581..583,587..589,
                     674..676,710..721,725..733,1010..1012,1019..1021,
                     1052..1057)
                     /gene="ETNK2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270706"
     misc_feature    order(524..526,530..532,998..1000,1004..1006,1013..1015,
                     1064..1066,1112..1114,1127..1129)
                     /gene="ETNK2"
                     /note="putative substrate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270706"
     misc_feature    order(905..916,923..928,944..946,956..958,1265..1267,
                     1337..1342,1349..1351,1358..1363,1370..1378)
                     /gene="ETNK2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:270706"
ORIGIN      
        1 gcggggcggg gtgggagcgt tcccgcggcc cccgccccgc ggcccgtgat gtcacaatcg
       61 cggcgggccc cggcgttccc gggtcggctt cggcttcggg cgcccggctg cgaggcggcg
      121 attgaagcgg gccgctggct cctgagtcat ggacttcccc tggcccctcc tctaccactc
      181 ccactcccgc gccgggcccc cccgcggggg ctagcgtccg cgcggcggct ccgagggggt
      241 ggggctgcag ggaatggctg tgcccccttc ggctcccctg ccgtgctcgc ccttttacct
      301 gaggaggcag gcgccttgcc cgcagtgctc atggggtatg gaggagaagg ctgcggccgg
      361 cgcgggctgc cgggaaccgc cgggcccccc gagggccgcc gccgtcccgt gcttcggcat
      421 atccgtggac caggacgaca tcctccccgg cgccctgcgc ctcatccggg agctgcggcc
      481 acattggaag ccccagcaag ttcggaccaa gcgcttcact gatggcatta ccaacaagct
      541 ggtggcctgc tacgtggagg acgacatgca ggactgtgtg ctggtccggg tgtacgggga
      601 gcggacagag ctgctggtgg accgggagaa tgaggtcagg aacttccagc tgctgcgagc
      661 acatggctgc gcccccaaac tctactgcac cttccagaat gggctgtgct acgagtacat
      721 gaggggcatg gccctggggc cagagcacat ccgtgagccc cggctcttca ggctgattgc
      781 cttagaaatg gcaaagattc acaccatcca cgccaacggc agcctgccca agcccatcct
      841 ctggcacaag atgcacagtt acttcaccct tgtgaagaac gagatcaacc ccagcctttc
      901 tgcagatgtc cctaaggtcg aggtgttgga acgggagctg gcctggctga aggagcacct
      961 gcctcagttg gactcccctg tggtgttttg ccacaatgac ctgctctgca agaacatcat
     1021 ctacgacagc accaaaggtc acgtacggtt cattgactat gaatatgccg gctataacta
     1081 ccaagctttt gacattggca accatttcaa tgagtttgca ggtgtgaatg aggtcgatta
     1141 ctgctggtac ccagcacggg agacccagct gcagtggctg cgctactacc tgcaggcaca
     1201 gaaggggatg gctgtgaccc ccagggaggt ggagaggctc tatgtgcaag tcaacaagtt
     1261 tgccctggcg tctcacttct tctgggcact ctgggccctc atccagagcc agttctccac
     1321 catcgacttt aatttcctca ggtatgcagt gatccgattc aaccagtatt tcaaggtgaa
     1381 gcctcaagtg ttggccttgg agatgccaaa gtgaccagcg ttcccatccg tcccctccca
     1441 tctgccggcc agacctgttc tccagggctc cattctgctc tggggtcttc acctttggac
     1501 aaggtgggcg aggggacagg tgggtgtccc aggagaaggc tctgcccctg tcgccagccc
     1561 ccagtgatgc ttctggtgac cattcttggt tggaggggct gataggcccc agctctgggg
     1621 gtcctcttca ccttgccaga ctgggtggtg gggagtgcct gcagcctgcc agggctcaga
     1681 ccacagccac cctggaaagg ctggcattcc cagccccggg ccatcgtggc atctgggctg
     1741 ccttagatgt gtctttaacc ttcctggctt ggggaagggg gaaggtggga gggctccttt
     1801 ctacctccag ggccctgagc ctccagcctg tttacccctg catgccccat gtggggggtg
     1861 ctgagcccaa accagcatcc tgccgactct gacagatgga tgtacatacc ttgggggggg
     1921 ggggtctaga attgggtttg atggctcccc cagcagccac ctcatctgag attactccct
     1981 ttctccaaac catatccaat caaataaccc cgtcccaaac cttagcctga ggacgtgtgc
     2041 tctcccccag tgccctttct gctccaggct tgtgttctgt acctctgccg cctgctggga
     2101 gggaaggcaa gggaatgggc caccaaagcc tggctctgct tcatgctgtg gcttggccag
     2161 aggggacaga gccaggagtg gggtggctgg acaatagcca gcaggctcct gccttgttcc
     2221 ctcccttgcc ctccaggccc tcacttccaa ggaacagtct ctccatgtcc accttctgtc
     2281 ctgaagttga cccacggtct ccacactggg gaatgactag tgggagtcta agggcagggg
     2341 ccagggacca ccggggcttg gccagcctgc aggagcctgg gtggggtcgg tcgtgaaggt
     2401 gctgaaggag ctgttgcccc gactctcaat ggcctccacc tcctttctgc cctcacagcc
     2461 tctcaggcct ttctggctct ggcctataaa atttttcatt tgtaaattat catggttttc
     2521 tgcattaaaa tggccattta tggaccactc
//
LOCUS       XR_004346230            1833 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ethanolamine kinase 2 (ETNK2), transcript
            variant X2, misc_RNA.
ACCESSION   XR_004346230
VERSION     XR_004346230.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1833
                     /gene="ETNK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741668"
     misc_RNA        1..1833
                     /gene="ETNK2"
                     /product="ethanolamine kinase 2, transcript variant X2"
                     /db_xref="GeneID:116741668"
ORIGIN      
        1 gcggggcggg gtgggagcgt tcccgcggcc cccgccccgc ggcccgtgat gtcacaatcg
       61 cggcgggccc cggcgttccc gggtcggctt cggcttcggg cgcccggctg cgaggcggcg
      121 attgaagcgg gccgctggct cctgagtcat ggacttcccc tggcccctcc tctaccactc
      181 ccactcccgc gccgggcccc cccgcggggg ctagcgtccg cgcggcggct ccgagggggt
      241 ggggctgcag ggaatggctg tgcccccttc ggctcccctg ccgtgctcgc ccttttacct
      301 gaggaggcag gcgccttgcc cgcagtgctc atggggtatg gaggagaagg ctgcggccgg
      361 cgcgggctgc cgggaaccgc cgggcccccc gagggccgcc gccgtcccgt gcttcggcat
      421 atccgtggac caggacgaca tcctccccgg cgccctgcgc ctcatccggg agctgcggcc
      481 acattggaag ccccagcaag ttcggaccaa gcgcttcact gatggcatta ccaacaagct
      541 ggtggcctgc tacgtggagg acgacatgca ggactgtgtg ctggtccggg tgtacgggga
      601 gcggacagag ctgctggtgg accgggagaa tgaggtcagg aacttccagc tgctgcgagc
      661 acatggctgc gcccccaaac tctactgcac cttccagaat gggctgtgct acgagtacat
      721 gaggggcatg gccctggggc cagagcacat ccgtgagccc cggctcttca ggctgattgc
      781 cttagaaatg gcaaagattc acaccatcca cgccaacggc agcctgccca agcccatcct
      841 ctggcacaag atgcacagtt acttcaccct tgtgaagaac gagatcaacc ccagcctttc
      901 tgcagatgtc cctaaggtcg aggtgttgga acgggagctg gcctggctga aggagcacct
      961 gcctcagttg gactcccctg tggtgttttg ccacaatgac ctgctctgca agaacatcat
     1021 ctacgacagc accaaaggtc acgtacggtt cattgactat gaatatgccg gctataacta
     1081 ccaagctttt gacattggca accatttcaa tgagtttgca ggtgtgaatg aggtcgatta
     1141 ctgctggtac ccagcacggg agacccagct gcagtggctg cgctactacc tgcaggcaca
     1201 gaaggggatg gctgtgaccc ccagggaggt ggagaggctc tatgtgcaag tcaacaagtt
     1261 tgccctggcg tctcacttct tctgggcact ctgggccctc atccagagcc agttctccac
     1321 catcgacttt aatttcctca ggtatgcagt gatccgattc aaccagtatt tcaaggtgaa
     1381 gcctcaagtg ttggccttgg agatgccaaa gtgaccagcg ttcccatccg tcccctccca
     1441 tctgccggcc agacctgttc tccagggctc cattctgctc tggggtcttc acctttggac
     1501 aaggtgggcg aggggacagg ccctcacttc caaggaacag tctctccatg tccaccttct
     1561 gtcctgaagt tgacccacgg tctccacact ggggaatgac tagtgggagt ctaagggcag
     1621 gggccaggga ccaccggggc ttggccagcc tgcaggagcc tgggtggggt cggtcgtgaa
     1681 ggtgctgaag gagctgttgc cccgactctc aatggcctcc acctcctttc tgccctcaca
     1741 gcctctcagg cctttctggc tctggcctat aaaatttttc atttgtaaat tatcatggtt
     1801 ttctgcatta aaatggccat ttatggacca ctc
//
LOCUS       XR_004346231            1817 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ethanolamine kinase 2 (ETNK2), transcript
            variant X3, misc_RNA.
ACCESSION   XR_004346231
VERSION     XR_004346231.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1817
                     /gene="ETNK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741668"
     misc_RNA        1..1817
                     /gene="ETNK2"
                     /product="ethanolamine kinase 2, transcript variant X3"
                     /db_xref="GeneID:116741668"
ORIGIN      
        1 gcggggcggg gtgggagcgt tcccgcggcc cccgccccgc ggcccgtgat gtcacaatcg
       61 cggcgggccc cggcgttccc gggtcggctt cggcttcggg cgcccggctg cgaggcggcg
      121 attgaagcgg gccgctggct cctgagtcat ggacttcccc tggcccctcc tctaccactc
      181 ccactcccgc gccgggcccc cccgcggggg ctagcgtccg cgcggcggct ccgagggggt
      241 ggggctgcag ggaatggctg tgcccccttc ggctcccctg ccgtgctcgc ccttttacct
      301 gaggaggcag gcgccttgcc cgcagtgctc atggggtatg gaggagaagg ctgcggccgg
      361 cgcgggctgc cgggaaccgc cgggcccccc gagggccgcc gccgtcccgt gcttcggcat
      421 atccgtggac caggacgaca tcctccccgg cgccctgcgc ctcatccggg agctgcggcc
      481 acattggaag ccccagcaag ttcggaccaa gcgcttcact gatggcatta ccaacaagct
      541 ggtggcctgc tacgtggagg acgacatgca ggactgtgtg ctggtccggg tgtacgggga
      601 gcggacagag ctgctggtgg accgggagaa tgaggtcagg aacttccagc tgctgcgagc
      661 acatggctgc gcccccaaac tctactgcac cttccagaat gggctgtgct acgagtacat
      721 gaggggcatg gccctggggc cagagcacat ccgtgagccc cggctcttca ggctgattgc
      781 cttagaaatg gcaaagattc acaccatcca cgccaacggc agcctgccca agcccatcct
      841 ctggcacaag atgcacagtt acttcaccct tgtgaagaac gagatcaacc ccagcctttc
      901 tgcagatgtc cctaaggtcg aggtgttgga acgggagctg gcctggctga aggagcacct
      961 gcctcagttg gactcccctg tggtgttttg ccacaatgac ctgctctgca agaacatcat
     1021 ctacgacagc accaaaggtc acgtacggtt cattgactat gaatatgccg gctataacta
     1081 ccaagctttt gacattggca accatttcaa tgagtttgca ggtgtgaatg aggtcgatta
     1141 ctgctggtac ccagcacggg agacccagct gcagtggctg cgctactacc tgcaggcaca
     1201 gaaggggatg gctgtgaccc ccagggaggt ggagaggctc tatgtgcaag tcaacaagtt
     1261 tgccctggcg tctcacttct tctgggcact ctgggccctc atccagagcc agttctccac
     1321 catcgacttt aatttcctca ggtatgcagt gatccgattc aaccagtatt tcaaggtgaa
     1381 gcctcaagtg ttggccttgg agatgccaaa gtgaccagcg ttcccatccg tcccctccca
     1441 tctgccggcc agacctgttc tccagggctc cattctgctc tggggtcttc acctttggac
     1501 aaggccctca cttccaagga acagtctctc catgtccacc ttctgtcctg aagttgaccc
     1561 acggtctcca cactggggaa tgactagtgg gagtctaagg gcaggggcca gggaccaccg
     1621 gggcttggcc agcctgcagg agcctgggtg gggtcggtcg tgaaggtgct gaaggagctg
     1681 ttgccccgac tctcaatggc ctccacctcc tttctgccct cacagcctct caggcctttc
     1741 tggctctggc ctataaaatt tttcatttgt aaattatcat ggttttctgc attaaaatgg
     1801 ccatttatgg accactc
//
LOCUS       XM_032608597            1385 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ethanolamine kinase 2 (ETNK2), transcript
            variant X4, mRNA.
ACCESSION   XM_032608597
VERSION     XM_032608597.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1385
                     /gene="ETNK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741668"
     CDS             266..1255
                     /gene="ETNK2"
                     /codon_start=1
                     /product="ethanolamine kinase 2 isoform X2"
                     /protein_id="XP_032464488.1"
                     /db_xref="GeneID:116741668"
                     /translation="MAVPPSAPLPCSPFYLRRQAPCPQCSWGMEEKAAAGAGCREPPG
                     PPRAAAVPCFGISVDQDDILPGALRLIRELRPHWKPQQVRTKRFTDGITNKLVACYVE
                     DDMQDCVLVRVYGERTELLVDRENEVRNFQLLRAHGCAPKLYCTFQNGLCYEYMRGMA
                     LGPEHIREPRLFRLIALEMAKIHTIHANGSLPKPILWHKMHSYFTLVKNEINPSLSAD
                     VPKVEVLERELAWLKEHLPQLDSPVVFCHNDLLCKNIIYDSTKGHVRFIDYEYAGYNY
                     QAFDIGNHFNEFAAPQDTGDGGFEGIREHLLSWRRPPGGPVSQQLLCLPIRCE"
     misc_feature    512..>1135
                     /gene="ETNK2"
                     /note="Euykaryotic Ethanolamine kinase; Region: ETNK_euk;
                     cd05157"
                     /db_xref="CDD:270706"
     misc_feature    order(530..532,536..538,542..547,551..553,593..595,
                     599..601,686..688,722..733,737..745,1010..1012,1016..1018,
                     1022..1027,1031..1033,1064..1069,1076..1078,1124..1126)
                     /gene="ETNK2"
                     /note="putative active site [active]"
                     /db_xref="CDD:270706"
     misc_feature    order(530..532,545..547,551..553,593..595,599..601,
                     686..688,722..733,737..745,1022..1024,1031..1033,
                     1064..1069)
                     /gene="ETNK2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270706"
     misc_feature    order(536..538,542..544,1010..1012,1016..1018,1025..1027,
                     1076..1078,1124..1126)
                     /gene="ETNK2"
                     /note="putative substrate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270706"
ORIGIN      
        1 cagtgggccg gggcggggcg gggtgggagc gttcccgcgg cccccgcccc gcggcccgtg
       61 atgtcacaat cgcggcgggc cccggcgttc ccgggtcggc ttcggcttcg ggcgcccggc
      121 tgcgaggcgg cgattgaagc gggccgctgg ctcctgagtc atggacttcc cctggcccct
      181 cctctaccac tcccactccc gcgccgggcc cccccgcggg ggctagcgtc cgcgcggcgg
      241 ctccgagggg gtggggctgc agggaatggc tgtgccccct tcggctcccc tgccgtgctc
      301 gcccttttac ctgaggaggc aggcgccttg cccgcagtgc tcatggggta tggaggagaa
      361 ggctgcggcc ggcgcgggct gccgggaacc gccgggcccc ccgagggccg ccgccgtccc
      421 gtgcttcggc atatccgtgg accaggacga catcctcccc ggcgccctgc gcctcatccg
      481 ggagctgcgg ccacattgga agccccagca agttcggacc aagcgcttca ctgatggcat
      541 taccaacaag ctggtggcct gctacgtgga ggacgacatg caggactgtg tgctggtccg
      601 ggtgtacggg gagcggacag agctgctggt ggaccgggag aatgaggtca ggaacttcca
      661 gctgctgcga gcacatggct gcgcccccaa actctactgc accttccaga atgggctgtg
      721 ctacgagtac atgaggggca tggccctggg gccagagcac atccgtgagc cccggctctt
      781 caggctgatt gccttagaaa tggcaaagat tcacaccatc cacgccaacg gcagcctgcc
      841 caagcccatc ctctggcaca agatgcacag ttacttcacc cttgtgaaga acgagatcaa
      901 ccccagcctt tctgcagatg tccctaaggt cgaggtgttg gaacgggagc tggcctggct
      961 gaaggagcac ctgcctcagt tggactcccc tgtggtgttt tgccacaatg acctgctctg
     1021 caagaacatc atctacgaca gcaccaaagg tcacgtacgg ttcattgact atgaatatgc
     1081 cggctataac taccaagctt ttgacattgg caaccatttc aatgagtttg cagccccaca
     1141 ggacacagga gatggaggtt ttgaggggat cagggaacac ctactgagct ggaggagacc
     1201 cccaggtggg cccgtctccc agcaacttct gtgcctcccc atcaggtgtg aatgaggtcg
     1261 attactgctg gtacccagca cgggagaccc agctgcagtg gctgcgctac tacctgcagg
     1321 cacagaaggg gatggctgtg acccccaggg aggtggagag gctctatgtg caagtcaaca
     1381 agttt
//
LOCUS       XM_032608622            1495 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus myosin binding protein H (MYBPH), mRNA.
ACCESSION   XM_032608622
VERSION     XM_032608622.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1495
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1495
                     /gene="MYBPH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 60%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741688"
     CDS             2..1495
                     /gene="MYBPH"
                     /codon_start=1
                     /product="myosin-binding protein H"
                     /protein_id="XP_032464513.1"
                     /db_xref="GeneID:116741688"
                     /translation="MHRPSSATTCALQPDPPAILAMRGKATGEALACGPEETASESTD
                     VPTTEPSGEVAAPKSTGEEQAPKPQEPAPQAPAPAASKPAPPSEDVPSAPLLLAVEDV
                     SDGSVTVSWEPPERLGKLGLQGYVLELRRQGALEWVPVNSRPMMVTQQTVRNLALGDK
                     FFIRVAAVSSAGAGPPAVLDQPVHIQRIIEAPKIRVPRHLRQTYVRQVGEMINLQIPF
                     QGNPKPQASWTHNGHALDSQRVSVRTGDQDSILFIRSAQRSDSGCYELTVQLEGLEAK
                     AAIDILVIDKPGSPSSIRLLDVWGCNAALEWTPPQDTGNTEILGYTVQKADKKTGQWF
                     TVLERYHPTTCTISDLIVGNSYSFRVFSENRCGLSASAAVTKELAHIQKTDIVAKPKS
                     FVERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRASPKPRIIWMKNKMDIQGDPKYRA
                     LSEQGVCTLEIRKPSPFDSGVYTCKAINVLGEASVDCRLEVKASATH"
     misc_feature    272..532
                     /gene="MYBPH"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(272..274,470..472,515..517)
                     /gene="MYBPH"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(518..523,527..532)
                     /gene="MYBPH"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    608..850
                     /gene="MYBPH"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    635..649
                     /gene="MYBPH"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    674..688
                     /gene="MYBPH"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    746..760
                     /gene="MYBPH"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    788..805
                     /gene="MYBPH"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    827..838
                     /gene="MYBPH"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    860..1108
                     /gene="MYBPH"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
     misc_feature    order(860..862,1055..1057,1100..1102)
                     /gene="MYBPH"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1103..1108,1112..1117)
                     /gene="MYBPH"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1205..1474
                     /gene="MYBPH"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1256..1270
                     /gene="MYBPH"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1295..1309
                     /gene="MYBPH"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1370..1384
                     /gene="MYBPH"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1412..1429
                     /gene="MYBPH"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1451..1462
                     /gene="MYBPH"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gatgcacaga ccctccagtg ctactacctg cgccctccag cccgaccctc cagcaatcct
       61 tgcaatgaga ggaaaagcca ccggggaagc ccttgcctgt ggtccggagg agactgcctc
      121 tgagtctaca gatgtgccca ccacagagcc ctctggagaa gtggcggcac cgaagtctac
      181 cggggaagag caggctccca agccacagga gcctgcccct caggcacctg cccccgcagc
      241 ctctaaaccc gcacctccaa gtgaagatgt ccccagtgcc ccgctgctgc tggctgtgga
      301 ggacgtgagt gacggctcgg tgactgtgag ctgggaaccc ccggagaggc tagggaagct
      361 ggggctccag ggctatgttc tggaactccg ccgacaggga gccttggagt gggtgcctgt
      421 gaattcccgg cccatgatgg tgacccagca gacggtgcgg aacctggctc taggtgacaa
      481 gttcttcata cgtgtggctg cagtgagctc tgcaggggct ggcccaccag ctgtgctgga
      541 ccagcccgtc cacatccaaa ggatcatcga ggcccccaag atccgcgttc cccgccacct
      601 tcgtcagacc tatgtccgtc aggtgggaga gatgattaac ctgcaaatcc ccttccaggg
      661 gaatcccaag cctcaggcct cgtggaccca caacggtcac gccctggaca gccagcgggt
      721 gagtgtgcgc accggggacc aggactccat cctcttcatc cgctcagccc agcgctccga
      781 ctcaggctgc tatgagctca cagtacagct ggaaggcctg gaggccaagg cagccatcga
      841 catcctggtg atcgataaac ctggatcccc cagcagcatc aggctactgg atgtctgggg
      901 ctgcaacgct gccctcgagt ggacaccacc ccaggacaca ggcaacacag agatcctggg
      961 ctacacggtg cagaaggcag acaaaaagac agggcaatgg ttcacagtgc tggagcgcta
     1021 ccacccgacc acctgcacta tctcagacct catcgtgggt aactcttact ccttccgagt
     1081 cttctcggaa aaccggtgtg gactcagtgc ctcggcggcc gtcaccaagg agctcgccca
     1141 catccagaag acagatattg ttgccaaacc taaaagtttt gttgagcgag acttctcaga
     1201 agccccctcg ttcacccagc ccctggctga ccacacctcc acccctggct acagcacgca
     1261 gctcttctgc agtgtccgag cgtcacccaa gcccaggatc atctggatga aaaacaagat
     1321 ggacatccag ggtgatccca aataccgcgc cctctctgag caaggtgtct gcaccctgga
     1381 gatccggaaa cccagcccct tcgattccgg ggtctacacc tgcaaggcca tcaatgtgct
     1441 gggggaggcg tctgtggact gccggctgga ggtcaaagcc tcagccacac actga
//
LOCUS       XM_032608634            2838 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adenosine A1 receptor (ADORA1),
            transcript variant X1, mRNA.
ACCESSION   XM_032608634
VERSION     XM_032608634.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2838
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2838
                     /gene="ADORA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741695"
     CDS             509..1489
                     /gene="ADORA1"
                     /codon_start=1
                     /product="adenosine receptor A1"
                     /protein_id="XP_032464525.1"
                     /db_xref="GeneID:116741695"
                     /translation="MPPSISAFQAAYIGIEVLIALVSVPGNVLVIWAVKVNQALRDAT
                     FCFIVSLAVADVAVGALVIPLAILINIGPQTYFHTCLMVACPVLILTQSSILALLAIA
                     VDRYLRVKIPLRYKTVVTPRRAVVAIVGCWILSFVVGLTPMFGWNNLSAVERAWVANG
                     SVGEPVIKCQFEKVISMEYMVYFNFFVWVLPPLLLMVFIYLEVFYLIRKQLNRKVSAS
                     SGDPQKYYGKELKIAKSLALILFLFALSWLPLHILNCITLFCPSCHKPRLLMYIAIFL
                     THGNSAMNPIVYAFRIQKFRVTFLKIWNDHFRCQPAPPIDEDPPEERPDD"
     misc_feature    536..1405
                     /gene="ADORA1"
                     /note="adenosine receptor subtype A1, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; Region: 7tmA_Adenosine_R_A1; cd15071"
                     /db_xref="CDD:341323"
     misc_feature    536..619
                     /gene="ADORA1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:341323"
     misc_feature    order(542..544,554..556,704..706,716..718,767..772,
                     779..781,1019..1024,1037..1039,1046..1048,1247..1249,
                     1256..1261,1268..1270,1316..1321,1328..1330)
                     /gene="ADORA1"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:341323"
     misc_feature    638..721
                     /gene="ADORA1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:341323"
     misc_feature    746..838
                     /gene="ADORA1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:341323"
     misc_feature    878..934
                     /gene="ADORA1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:341323"
     misc_feature    1037..1129
                     /gene="ADORA1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:341323"
     misc_feature    1187..1279
                     /gene="ADORA1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:341323"
     misc_feature    1307..1384
                     /gene="ADORA1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:341323"
ORIGIN      
        1 tgctgagagc ccagccctgc ctggcgcggc ctcgagccct gagtggcacc aggtgtccgg
       61 aactttgggc acagcctctg ggactccctg gccaccagca gacaggatgg tgagctccct
      121 gcatcctgtt ctgtgggcat gggtaggcag agccaggcac tggggacccg tgtggggtga
      181 gtgtgtgctg gaaactgcct cacacctgat aaaatagccg gtggaggagt gagtgccgct
      241 cttttatgtt gtcgaatgga tccgctggga ctgataaggg gaggggacaa agatccggca
      301 gagaaagggt tagggtaccc caccagcttg ggcaggcact agatgtgcca agtggggcac
      361 atctccaaag ggcagctgga cttccagagc cgcctgggtt cccctcccct tcccaggcag
      421 gccttcccac cccaggcttc cgtgaccaca ggtgcttgcc tcctgcccct tggtgcctgt
      481 ctgctgatgt gcccagcctg tgcccaccat gccgccctcc atctcggcct tccaggccgc
      541 gtatattggc atcgaggtgc tcatcgccct ggtctccgtg cctgggaacg tgctggtgat
      601 ctgggcagtg aaggtgaacc aggcactgcg ggatgccacc ttctgcttca tcgtgtcact
      661 ggcagtggct gatgtggcag tgggcgctct ggtcatccca cttgccatcc tcatcaacat
      721 tgggccacag acctacttcc acacctgcct catggtcgcc tgccctgtcc tcatcctcac
      781 tcagagctcc atcttggccc tgctggcaat cgctgtcgac cgctacctcc gtgtcaagat
      841 cccgctcagg tacaagacag tggtgactcc ccgaagggct gtggtggcca tcgttggctg
      901 ctggattctc tcctttgtgg tgggcttgac acctatgttc ggctggaaca acctgagtgc
      961 ggtggagcgg gcctgggtgg ccaatggcag tgtaggtgag cccgtgatca agtgtcagtt
     1021 tgagaaggtg atcagcatgg agtacatggt ctacttcaac ttctttgtct gggtgctgcc
     1081 cccactgctg ctcatggtct tcatctacct ggaggtcttc tacctgatcc gcaagcagct
     1141 caacaggaag gtgtcggcat cctctggcga cccgcagaag tactatggga aggagctgaa
     1201 gatcgccaag tcgctggccc tcatcctctt cctctttgct ctcagctggc tgcccctaca
     1261 catccttaac tgcatcaccc tcttctgccc ttcctgccat aagccgaggc tcctcatgta
     1321 catcgccatc ttcctcacac atggtaactc ggccatgaat cccatcgtct atgccttccg
     1381 catccagaag tttcgggtta ccttccttaa gatttggaac gaccacttcc gctgccaacc
     1441 tgcacccccc atcgatgagg atcctccaga agagaggccc gatgactaga ctccacctcc
     1501 tgcccccagc tgcgcacatc tggggcatct cagcccagta ctcacctccc tgctgtccca
     1561 ctcgtctccc ttgtctccct gaatcttccc tactggcctt tgggctgtga gtgccctgca
     1621 cctcgaggtc ctggaggagt tttgggaggg cagtccatgg ggaaagaacg aggtaacctg
     1681 aggggacgag gaaagtggcg gcagcaccct aaccctaacc atccccacct gcctgaccaa
     1741 cccacaggca gcccagcaca tcaggctaag tggggcttgg ggacactgag actgccatgg
     1801 ggccatgtgg accaggaggg caagctcagc tcccgtggcg ggaagggagg ggagtctgct
     1861 tgtcttaggt ggtagtggtg cagccctggg accaagttta aggagaggag aatatccctg
     1921 ccaagatgga gggaagggga gaaactagat gtcctggcct tgttttctct cctgttctgt
     1981 agcagaaggt ggccagagcc actgacaggc aggaagcaag gagcctcagt ccccacctcc
     2041 cagaaccctg tgttcctggc catgctgcat gccagggtgc ctgctctctt tgccctgggg
     2101 atcccagggt tatacttggg agaggccgaa aggacgagtc cagaaataat ttccagtatt
     2161 tgctttattc tcccctagcc cttggacctg agtgggggct ccgagctccc tggagctaat
     2221 gtggaatggt aggtgtgggc ctcaaacagc cactgggaga cagtgttgag ccctcattct
     2281 tgccttgagc ctcccaagta ggagacttgg agtgtaactg cctgtcctct gggccaccag
     2341 ctctcggtga tgggcatgag ccctcttagg tgacacccat ctctgttgct tctgagccag
     2401 atggagagga gagccccaga catgccagct cttgggagca ttctgcctgc ctggggagtg
     2461 gatgaagaag ggaaggtggg ctgctgtggt catgctggga tgaagtgtga cagggtggtc
     2521 aggccagagg agactaccct cctgggtgta tgggtgggaa ggtcttacca gaatttaggt
     2581 accctcagta cccctgacag cacagtgttc atgggctttg aggctctgtt gcagcgtcta
     2641 ggcctttagc ctaaaccctt ggggaagggt ctactcctgg ccaagcccaa agctccttat
     2701 acagaagaat gaggggccag gttctaagtg tgaatagcaa ctccagacat gattccaggc
     2761 ccttccctct ctcagaggtg ggatatcccc tggctcccag ggcgggccac ttgactaata
     2821 aaagactgtg aaccctca
//
LOCUS       XM_032608643            1606 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adenosine A1 receptor (ADORA1),
            transcript variant X2, mRNA.
ACCESSION   XM_032608643
VERSION     XM_032608643.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1606
                     /gene="ADORA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741695"
     CDS             509..1489
                     /gene="ADORA1"
                     /codon_start=1
                     /product="adenosine receptor A1"
                     /protein_id="XP_032464534.1"
                     /db_xref="GeneID:116741695"
                     /translation="MPPSISAFQAAYIGIEVLIALVSVPGNVLVIWAVKVNQALRDAT
                     FCFIVSLAVADVAVGALVIPLAILINIGPQTYFHTCLMVACPVLILTQSSILALLAIA
                     VDRYLRVKIPLRYKTVVTPRRAVVAIVGCWILSFVVGLTPMFGWNNLSAVERAWVANG
                     SVGEPVIKCQFEKVISMEYMVYFNFFVWVLPPLLLMVFIYLEVFYLIRKQLNRKVSAS
                     SGDPQKYYGKELKIAKSLALILFLFALSWLPLHILNCITLFCPSCHKPRLLMYIAIFL
                     THGNSAMNPIVYAFRIQKFRVTFLKIWNDHFRCQPAPPIDEDPPEERPDD"
     misc_feature    536..1405
                     /gene="ADORA1"
                     /note="adenosine receptor subtype A1, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; Region: 7tmA_Adenosine_R_A1; cd15071"
                     /db_xref="CDD:341323"
     misc_feature    536..619
                     /gene="ADORA1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:341323"
     misc_feature    order(542..544,554..556,704..706,716..718,767..772,
                     779..781,1019..1024,1037..1039,1046..1048,1247..1249,
                     1256..1261,1268..1270,1316..1321,1328..1330)
                     /gene="ADORA1"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:341323"
     misc_feature    638..721
                     /gene="ADORA1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:341323"
     misc_feature    746..838
                     /gene="ADORA1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:341323"
     misc_feature    878..934
                     /gene="ADORA1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:341323"
     misc_feature    1037..1129
                     /gene="ADORA1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:341323"
     misc_feature    1187..1279
                     /gene="ADORA1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:341323"
     misc_feature    1307..1384
                     /gene="ADORA1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:341323"
ORIGIN      
        1 tgctgagagc ccagccctgc ctggcgcggc ctcgagccct gagtggcacc aggtgtccgg
       61 aactttgggc acagcctctg ggactccctg gccaccagca gacaggatgg tgagctccct
      121 gcatcctgtt ctgtgggcat gggtaggcag agccaggcac tggggacccg tgtggggtga
      181 gtgtgtgctg gaaactgcct cacacctgat aaaatagccg gtggaggagt gagtgccgct
      241 cttttatgtt gtcgaatgga tccgctggga ctgataaggg gaggggacaa agatccggca
      301 gagaaagggt tagggtaccc caccagcttg ggcaggcact agatgtgcca agtggggcac
      361 atctccaaag ggcagctgga cttccagagc cgcctgggtt cccctcccct tcccaggcag
      421 gccttcccac cccaggcttc cgtgaccaca ggtgcttgcc tcctgcccct tggtgcctgt
      481 ctgctgatgt gcccagcctg tgcccaccat gccgccctcc atctcggcct tccaggccgc
      541 gtatattggc atcgaggtgc tcatcgccct ggtctccgtg cctgggaacg tgctggtgat
      601 ctgggcagtg aaggtgaacc aggcactgcg ggatgccacc ttctgcttca tcgtgtcact
      661 ggcagtggct gatgtggcag tgggcgctct ggtcatccca cttgccatcc tcatcaacat
      721 tgggccacag acctacttcc acacctgcct catggtcgcc tgccctgtcc tcatcctcac
      781 tcagagctcc atcttggccc tgctggcaat cgctgtcgac cgctacctcc gtgtcaagat
      841 cccgctcagg tacaagacag tggtgactcc ccgaagggct gtggtggcca tcgttggctg
      901 ctggattctc tcctttgtgg tgggcttgac acctatgttc ggctggaaca acctgagtgc
      961 ggtggagcgg gcctgggtgg ccaatggcag tgtaggtgag cccgtgatca agtgtcagtt
     1021 tgagaaggtg atcagcatgg agtacatggt ctacttcaac ttctttgtct gggtgctgcc
     1081 cccactgctg ctcatggtct tcatctacct ggaggtcttc tacctgatcc gcaagcagct
     1141 caacaggaag gtgtcggcat cctctggcga cccgcagaag tactatggga aggagctgaa
     1201 gatcgccaag tcgctggccc tcatcctctt cctctttgct ctcagctggc tgcccctaca
     1261 catccttaac tgcatcaccc tcttctgccc ttcctgccat aagccgaggc tcctcatgta
     1321 catcgccatc ttcctcacac atggtaactc ggccatgaat cccatcgtct atgccttccg
     1381 catccagaag tttcgggtta ccttccttaa gatttggaac gaccacttcc gctgccaacc
     1441 tgcacccccc atcgatgagg atcctccaga agagaggccc gatgactaga ctccacctcc
     1501 tgcccccagc tgcgcacatc tggggcatct cagcccagcg tcaccagcag caccctgccc
     1561 ggcagcgtct gtggagcacc cccaggactg tgcgtgttcg ttgcct
//
LOCUS       XM_032608655            1686 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chitinase 3 like 1 (CHI3L1), mRNA.
ACCESSION   XM_032608655
VERSION     XM_032608655.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                VOSU01000011.1     154110714-154110756
            44-72               VOSU01000011.1     154110957-154110985
            73-73               VOSU01000011.1     154111677-154111677
            74-180              VOSU01000011.1     154111911-154112017
            181-181             "N"                1-1
            182-275             VOSU01000011.1     154112018-154112111
            276-332             VOSU01000011.1     154112626-154112682
            333-483             VOSU01000011.1     154113641-154113791
            484-605             VOSU01000011.1     154114530-154114651
            606-729             VOSU01000011.1     154115693-154115816
            730-912             VOSU01000011.1     154116406-154116588
            913-1029            VOSU01000011.1     154117146-154117262
            1030-1686           VOSU01000011.1     154117462-154118118
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1686
                     /gene="CHI3L1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 19 Proteins, and 50% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116741706"
     CDS             19..1170
                     /gene="CHI3L1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:652..654,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: chitinase-3-like protein 1"
                     /protein_id="XP_032464546.1"
                     /db_xref="GeneID:116741706"
                     /translation="MGLRVAQTGFVVLVLPRACAAYKLICYYTSWSQYREGDGSCFPD
                     AIDPFLCTHIXYSFASISNSAIDTWEWNDVTLYDTLNTLKNRNPSLKTLLFVGGWNFG
                     YQRFSKIASNTWSRRTFIKSVPPFLRTHGFDGLDLAWLNPGRRNKQHLTTLIKETEAE
                     FAREAQAGAEQLLLSAAVSAGKIAIDRGYDIAQISRHLHFISLLTYDFYGAXRQTIAH
                     HSPLFRGQEDTSSDRFTNSDYAVSYVLRLGAQANKLVMGIPTFGRSFTLASSKTDVGA
                     PTSGPGIPGQFTKEKGTLAYYEICDFLRGATVHRLLGQQVPYATKGNQWVGYDDQESI
                     KNKVQYLRNRQLAGAMVWALDLDDFQGTLCGQNLHFPLTSAIKDALAEV"
     misc_feature    88..1158
                     /gene="CHI3L1"
                     /note="This conserved domain family includes a large
                     number of catalytically inactive chitinase-like lectins
                     (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1,
                     oviductin, and AMCase (acidic mammalian chitinase), as
                     well as catalytically active...; Region:
                     GH18_chitolectin_chitotriosidase; cd02872"
                     /db_xref="CDD:119351"
     misc_feature    order(97..99,109..111,313..318,430..432,436..441,556..561,
                     628..630,634..639,652..654,799..801,805..807,886..888,
                     1072..1074)
                     /gene="CHI3L1"
                     /note="active site"
                     /db_xref="CDD:119351"
ORIGIN      
        1 ccctctgctg cagccaggat gggtctgagg gtggctcaga caggttttgt ggtcctggtg
       61 ttgcccagag cttgtgctgc atacaagctg atctgctact acaccagctg gtcccagtac
      121 cgggagggcg atgggagctg cttcccagac gccattgacc ccttcctctg tacccacatc
      181 ntctacagct ttgccagcat aagcaacagt gcgatcgaca cctgggagtg gaatgatgtg
      241 acgctctatg acacactgaa cacactcaag aacaggaatc ccagcctgaa gacccttcta
      301 tttgttggag gatggaactt tggttatcaa agattttcca aaatagcctc caacacctgg
      361 agtcgcagaa ccttcatcaa gtcggtgcca ccatttctgc ggacccatgg ctttgatgga
      421 ctggacctag cctggctcaa ccccgggcgg agaaacaagc agcatctcac cactctgatc
      481 aaggaaacgg aggctgagtt tgcaagggaa gcccaggcag gagcagagca actcctgctc
      541 agcgcggcag tgtctgctgg gaagattgcc attgacagag gctatgacat cgcccagata
      601 tcccgacacc tgcacttcat cagccttctg acctacgact tttatggagc gtagcgccag
      661 accatagcac atcacagccc cctattccga ggccaggaag atacaagttc tgacagattc
      721 accaattctg actacgctgt gagctatgtg ttgaggctgg gggcccaggc caataagctg
      781 gtgatgggta tccccacttt tgggaggagc ttcaccctgg cctcttccaa gacagatgtg
      841 ggagccccaa cctcagggcc aggaatacca ggccagttca ccaaggagaa agggaccctc
      901 gcctactatg agatctgtga ctttctccgc ggagccacag tccatagact ccttggtcag
      961 caggtcccct atgccactaa gggcaaccag tgggtggggt atgatgacca ggagagcatc
     1021 aaaaacaagg tgcagtacct gaggaacagg cagctggctg gcgccatggt gtgggccctg
     1081 gacttggatg actttcaggg caccttgtgc ggacagaatc tgcacttccc tctcaccagt
     1141 gccatcaagg atgcgcttgc tgaggtgtag ccttcggttc ctgggcacac agtggggcag
     1201 agatcacttg gccctgactg gctaggagcc tgatcacctg ccctgctggg tcccctgttg
     1261 agcttcagtc tcccttcctt gggcccatgc ggagggccac agctctgcca tctgagctca
     1321 gctctggtgg acaggcaggt actccaggcc ccacacaagg agatttcttc aactccctta
     1381 cccccaggcc tctatgccta aggacaccct tttggcaagc tgtaccactg cagagtgaaa
     1441 tatcttacaa gaagcagcaa ccacgctaat tatatcctct gcaaagccca gcttgaaacc
     1501 tttactcagg gacataatca tgtccccact ccacttccct ttcctgattc tgcggctgct
     1561 cagtaaagca ctggggcccg ccagttatta gcgcctgctt cagtctatct ttgcggtccc
     1621 actggacccc cggggctcac ctcccccgtc tcttctggat tcctctctct caggcttggt
     1681 agtcct
//
LOCUS       XM_032608662            1597 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein-coupled receptor 88 (GPR88),
            mRNA.
ACCESSION   XM_032608662
VERSION     XM_032608662.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1597
                     /gene="GPR88"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 Proteins, and 12%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741713"
     CDS             449..1597
                     /gene="GPR88"
                     /codon_start=1
                     /product="probable G-protein coupled receptor 88"
                     /protein_id="XP_032464553.1"
                     /db_xref="GeneID:116741713"
                     /translation="MTNSSTSTSSATGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGG
                     TLANGMVIYLVSSFRKLQTTSNAFIVNGCAADLSVCALWMPQEAVLGLLPAGSAEPPG
                     DWDGAGGSYRLLRGGLLGLGLTVSLLSHCLVALNRYLLITRAPATYQALYQRRHTAGM
                     LALSWALALGLVLLLPPWAPRPGAAPPRVHYPALLAAAALLAQTALLLHCYLGIVRRV
                     RVSVKRVSVLNFHLLHQLPGCAAAAAFPGAPHAPGPGGAAHPAQAQPLPPALHPRRAQ
                     RRLSGLSVLLLCCVFLLATQPLVWVSLASGFSLPVPWGVQAASWLLCCALSALNPLLY
                     TWRNEEFRRSVRSVLPGIGDAAAAAAAATAMPAVSQAQLGTRAAGQHW"
     misc_feature    542..1483
                     /gene="GPR88"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    545..619
                     /gene="GPR88"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    644..712
                     /gene="GPR88"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    785..853
                     /gene="GPR88"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    923..973
                     /gene="GPR88"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    1013..1084
                     /gene="GPR88"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    1289..1357
                     /gene="GPR88"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    1385..1462
                     /gene="GPR88"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 cttcgagtgg gttcccctca tcagccacca ctcttgcttc tgagcacggg gtgcttgctc
       61 tcctcttgag ctgagcttct gcttttgcag ccaagcatcc ttgctgctgc cgcctgacta
      121 cctgcccacc tgcctgggct tgcagcctgc cacttcactt tctccagccc tgctgccagc
      181 tgagaagtct ccctgcagct gctggtttct gcctagggcc atgtgcgtgg atgctgcatt
      241 ggagaaggag gcacttggct cctggcactg atcccagatg agtttctcct attgatttcg
      301 ggaccacaga tgctgctgct gaggaggtat ttcctggcat ccctccctct gctactgcca
      361 gctaaggacc agcccgaaag cgggtgtcag gatgtgccgc gctgcgagaa gccgacgcta
      421 gccagagagg tgtgaagagt tggccagaat gaccaactct tccacgtcca cttcctccgc
      481 caccggggga tcgctgttgc tgctctgcga ggaagaggag tcgtgggcgg gccggcgcat
      541 ccccgtgtcc ctcctgtact caggcctggc catcgggggc acgctggcca acggcatggt
      601 catctatctc gtgtcgtcct tccgaaagct gcagactacg agcaacgcct tcatcgtgaa
      661 cggctgtgcc gccgacctca gcgtctgcgc cctctggatg ccgcaggagg cggtgctcgg
      721 gctcctgccc gcgggctccg cggagccccc tggggactgg gacggcgccg gggggagcta
      781 ccgcctgctg cggggcgggc tgctgggcct cgggctcacc gtgtccctct tgtcccactg
      841 cctggtggcc ctgaaccgct acctactcat cacccgggcg cccgccacct accaggcgct
      901 gtaccagcgg cgccacacgg cgggcatgct ggcgctgtcc tgggcacttg ccctgggcct
      961 cgtgctgctg ctcccgccct gggcgccgcg tcccggcgcc gcgcccccgc gcgtccacta
     1021 cccggcgctg ctggccgccg cggcgctgct ggcgcagacg gcgctgctgc tgcactgcta
     1081 cctgggcatc gtgcgccgcg tgcgcgtcag cgtcaagcgg gtcagcgtcc tcaacttcca
     1141 cctactgcac cagctgcccg gctgcgccgc cgccgccgcc ttcccgggag cccctcacgc
     1201 gccaggcccg ggtggtgccg cgcacccggc tcaggcccag ccgctgcccc cagcgctgca
     1261 cccgcggcgg gcgcagcggc gtctcagcgg cctgtcggtg ctgctgctct gctgcgtctt
     1321 cttgctggcc acgcagccgc tggtgtgggt gagcctggcc agcggcttct cgctgcctgt
     1381 gccctggggt gtgcaggcgg ccagctggct cctgtgctgc gctctgtccg cgctcaaccc
     1441 gctgctctac acgtggagga acgaggagtt ccgccgctcc gtgcgctccg tcctgcccgg
     1501 catcggcgac gcggcggccg ccgctgccgc cgccacggct atgcctgcgg tgtcccaggc
     1561 gcagctgggc actcgcgccg caggccagca ctggtga
//
LOCUS       XM_032608677            1298 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selenoprotein F (SELENOF), transcript
            variant X1, mRNA.
ACCESSION   XM_032608677
VERSION     XM_032608677.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1298
                     /gene="SELENOF"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 12 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741720"
     CDS             57..554
                     /gene="SELENOF"
                     /codon_start=1
                     /transl_except=(pos:342..344,aa:Sec)
                     /product="selenoprotein F isoform X1"
                     /protein_id="XP_032464568.1"
                     /db_xref="GeneID:116741720"
                     /translation="MAPMAAGLDGWLLPAFGLRLLLVTVLQTVSAFGAEFSSETCREL
                     GFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFP
                     QVQAFVRSDKPRLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE
                     KLERI"
     misc_feature    318..545
                     /gene="SELENOF"
                     /note="Sep15/SelM redox domain; Region: Sep15_SelM;
                     pfam08806"
                     /db_xref="CDD:462607"
ORIGIN      
        1 ctggagtaga cgccccgagc agaggggtcc tctgggcagc cggagaccta cggaagatgg
       61 cacctatggc ggccgggctg gatgggtggc ttttgccggc ttttgggctg cggctgctgc
      121 tggtgactgt gcttcaaacg gtctctgcgt ttggggcaga gttttcatca gagacttgca
      181 gagagttagg cttctccagc aacttgctct gcagctcctg tgatctgctt ggacagttca
      241 accttcttca actggatcct gactgtagag gatgctgtca ggaagaagca caatttgaaa
      301 ccaaaaagct gtatgcagga gctattcttg aagtctgtgg atgaaaattg gggaggttcc
      361 ctcaagtcca agctttcgtc aggagtgata aacccagact attcagagga ctacaaatca
      421 agtatgttcg cggttcagac cctgtgctaa agcttttgga cgacaatggg aacattgctg
      481 aagaactaag catcctcaaa tggaacacag acagtgtaga agaattcctg agtgaaaagt
      541 tggaacgcat ataaatcttg cttaaatttt gtcctatcct tttgttacct tgtcaaatga
      601 aatgtcacag cacctagaaa ataatttagt tttgctttct tccattgatc agtcttttac
      661 tgtgaggcat taaacatcta attaaaagtt gaagtggcag cacaacccat gttatgtaag
      721 gagttggcaa gcttaacaaa actcattttt tataagtttc catcctccat ttgttgatac
      781 cactaacaaa atgctttgta atagtcttgt ggttaattat gcaaatgata atttgtgata
      841 attggtccag ttttacgaac aacagatttt ttaattaggg aggttaataa gggagatgat
      901 tacggtgcct catgtgctgt gtgctttttg aaagggaaga cagaaaacta caaagcaaat
      961 aagatacacc gagcctcaac agattgcctg cttctcagat cctctcatat ttttgtatta
     1021 cccagctttc cttttaatag aaacgttata gcttataatg aatgcactgc ataaaaactg
     1081 tatggcttca ttcttgtaaa acagattcaa gatctacggt aagagtgaaa cattcacaca
     1141 aagattcgca ttaatgaaga ctacacagaa aacctttttg tggatttgtg tggatctgat
     1201 atttagcaaa tttttgtgct ttacattctt acagaagagt aaagttaaaa attatcattt
     1261 gtaagaccag aatataaata aaacgtttca aaaatcta
//
LOCUS       XM_032608682            1248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus selenoprotein F (SELENOF), transcript
            variant X2, mRNA.
ACCESSION   XM_032608682
VERSION     XM_032608682.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1248
                     /gene="SELENOF"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 2
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116741720"
     CDS             57..431
                     /gene="SELENOF"
                     /codon_start=1
                     /transl_except=(pos:342..344,aa:Sec)
                     /product="selenoprotein F isoform X2"
                     /protein_id="XP_032464573.1"
                     /db_xref="GeneID:116741720"
                     /translation="MAPMAAGLDGWLLPAFGLRLLLVTVLQTVSAFGAEFSSETCREL
                     GFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFP
                     QVQVCSRFRPCAKAFGRQWEHC"
ORIGIN      
        1 ctggagtaga cgccccgagc agaggggtcc tctgggcagc cggagaccta cggaagatgg
       61 cacctatggc ggccgggctg gatgggtggc ttttgccggc ttttgggctg cggctgctgc
      121 tggtgactgt gcttcaaacg gtctctgcgt ttggggcaga gttttcatca gagacttgca
      181 gagagttagg cttctccagc aacttgctct gcagctcctg tgatctgctt ggacagttca
      241 accttcttca actggatcct gactgtagag gatgctgtca ggaagaagca caatttgaaa
      301 ccaaaaagct gtatgcagga gctattcttg aagtctgtgg atgaaaattg gggaggttcc
      361 ctcaagtcca agtatgttcg cggttcagac cctgtgctaa agcttttgga cgacaatggg
      421 aacattgctg aagaactaag catcctcaaa tggaacacag acagtgtaga agaattcctg
      481 agtgaaaagt tggaacgcat ataaatcttg cttaaatttt gtcctatcct tttgttacct
      541 tgtcaaatga aatgtcacag cacctagaaa ataatttagt tttgctttct tccattgatc
      601 agtcttttac tgtgaggcat taaacatcta attaaaagtt gaagtggcag cacaacccat
      661 gttatgtaag gagttggcaa gcttaacaaa actcattttt tataagtttc catcctccat
      721 ttgttgatac cactaacaaa atgctttgta atagtcttgt ggttaattat gcaaatgata
      781 atttgtgata attggtccag ttttacgaac aacagatttt ttaattaggg aggttaataa
      841 gggagatgat tacggtgcct catgtgctgt gtgctttttg aaagggaaga cagaaaacta
      901 caaagcaaat aagatacacc gagcctcaac agattgcctg cttctcagat cctctcatat
      961 ttttgtatta cccagctttc cttttaatag aaacgttata gcttataatg aatgcactgc
     1021 ataaaaactg tatggcttca ttcttgtaaa acagattcaa gatctacggt aagagtgaaa
     1081 cattcacaca aagattcgca ttaatgaaga ctacacagaa aacctttttg tggatttgtg
     1141 tggatctgat atttagcaaa tttttgtgct ttacattctt acagaagagt aaagttaaaa
     1201 attatcattt gtaagaccag aatataaata aaacgtttca aaaatcta
//
LOCUS       XM_032608721            1395 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G protein-coupled receptor 37 like 1
            (GPR37L1), mRNA.
ACCESSION   XM_032608721
VERSION     XM_032608721.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1395
                     /gene="GPR37L1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins"
                     /db_xref="GeneID:116741733"
     CDS             1..1395
                     /gene="GPR37L1"
                     /codon_start=1
                     /product="G-protein coupled receptor 37-like 1"
                     /protein_id="XP_032464612.1"
                     /db_xref="GeneID:116741733"
                     /translation="MRRPWPLAISLAVALAAGPGRVPGGVPLRRGGRGTEEEAKGVQQ
                     YVPQEWAEYPRPIRPTGPQPTEPQVATSAHPDRAVVPGGSRQEPLGNATGTPGWRLQI
                     QNPLYPVTESSYGAYTVLLLALVLFAVGIVGNLAVMCIVSHSYYLKSAWNSILASLAL
                     WDFLVLFFCLPVIIFHEITKQRLLGDVSCRAVPFVEVSSLGVTTFSLCALGIDRFHVA
                     TSTLPEARPIEPCPSILAKLAVIWVGSMTLAAPELLLWQLVQEPGPAAGPVDACIMKP
                     SARLPESLYSLVLTYQNARMWWSFGCYFCLPVLFTVTCQLVTWRVWGPPGRKPECRPG
                     QQERREGQLSGTVVGLTAVYTLCTLPENVCNVVAAYLSATLTRQTLDLLGLVGQFATF
                     LKAAATPVLLLCVCRPLGRAFLDCCCCCCCEGCGGAAATDGPVAKLRTGLATSVYFHK
                     PREAPPLLALGTPC"
     misc_feature    388..1239
                     /gene="GPR37L1"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    454..522
                     /gene="GPR37L1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:319898"
     misc_feature    568..636
                     /gene="GPR37L1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:319898"
     misc_feature    706..756
                     /gene="GPR37L1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:319898"
     misc_feature    877..948
                     /gene="GPR37L1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:319898"
     misc_feature    1030..1098
                     /gene="GPR37L1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:319898"
     misc_feature    1141..1218
                     /gene="GPR37L1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:319898"
ORIGIN      
        1 atgcggcggc cgtggcctct ggccatctct ctcgctgtgg cgttagcggc aggtcccggc
       61 agggtccccg ggggcgtccc cctgcgccgg ggcgggcgtg gcaccgagga ggaggccaag
      121 ggggtgcagc agtatgtgcc ccaggagtgg gctgagtatc cccggcccat ccgccccacc
      181 gggccgcagc ccaccgagcc ccaggtggcc accagcgccc acccggaccg ggccgtggtc
      241 cctgggggca gcaggcagga gcctctgggc aacgcgacgg ggacgccggg ctggcggctg
      301 cagatccaga accccctgta cccggtgacg gagagctcct atggggccta caccgtgctg
      361 ctcctggccc tggtgctgtt tgccgtgggc atcgtgggca acctggcggt catgtgcatc
      421 gtgtcgcaca gctactacct gaagagcgcc tggaactcca tcctcgccag cctggccctc
      481 tgggactttc tggtcctctt cttctgcctc cctgtcatca tcttccacga gatcaccaag
      541 cagaggctgc tgggtgacgt gtcttgccgg gctgtgccct tcgtggaggt ctcctctctc
      601 ggcgtcacca ccttcagcct ctgcgccctg ggcattgacc gcttccacgt ggccaccagc
      661 accctgcccg aggccaggcc catcgagccg tgcccgtcca tcctggccaa gctggcggtc
      721 atctgggtgg gctccatgac gctggctgcg cccgagctcc tgctctggca gctggtacag
      781 gagcccggcc ccgccgcggg ccccgtggac gcgtgcatca tgaagccctc cgcccgcctg
      841 cccgagtccc tctactcgct ggtcttgacc taccagaacg cccggatgtg gtggtccttc
      901 ggctgctact tctgcctgcc cgtcctcttc acggtcacct gccagctggt gacgtggcgg
      961 gtgtggggcc cgcccggcag aaagccggag tgccggccgg gccagcagga gcggcgcgag
     1021 ggccagctca gcggcaccgt ggtgggcctg accgccgtct acaccctctg caccctcccc
     1081 gagaacgtgt gcaatgtcgt ggccgcctac ctctcggcca cgctcacccg ccagaccctg
     1141 gacctcctgg gcctggtcgg ccagttcgcc accttcctca aggcggccgc cacgcccgtg
     1201 ctcctcctgt gtgtgtgccg gccgctgggc cgcgccttcc tggactgctg ttgctgctgc
     1261 tgctgcgagg gctgcggcgg ggcggcagcc accgacggcc cagttgccaa gctccggacg
     1321 gggctggcca cctctgtcta cttccacaag ccccgagagg cgccaccgct cctggccctg
     1381 ggcacgccct gctga
//
LOCUS       XM_032608731             903 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus olfactory receptor 10K1-like
            (LOC116741743), mRNA.
ACCESSION   XM_032608731
VERSION     XM_032608731.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..903
                     /gene="LOC116741743"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 Proteins"
                     /db_xref="GeneID:116741743"
     CDS             1..903
                     /gene="LOC116741743"
                     /codon_start=1
                     /product="olfactory receptor 10K1-like"
                     /protein_id="XP_032464622.1"
                     /db_xref="GeneID:116741743"
                     /translation="MEWVNETSVREFFFLDFSSLAELQQLLFVVFLLLYLFMLGTNAI
                     IISTIVLDRALHTPMYFFLGVLSCSETCYTFIIIPKMLVDLLAQKKTISFLGCAIQMF
                     TFLFLICSHSFLLAAMGYDRYVAICNPLHYTVLMGYGGCLGLVAAACACGFTVSVVIT
                     SLIFGLPFHSNHLHHYFCDISPVLKLASHHSHLSQLVIFMLGVFVLVIPLLLILVSYI
                     HVISAILKIPSSVGRYKAFSTCASHLIVVTVHYGCASFIYLRPKSNYSSSQDTLISVS
                     YTILTPLFNPMIYSLRSKEFKSAL"
     misc_feature    115..900
                     /gene="LOC116741743"
                     /note="olfactory receptor subfamily 10A and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; Region:
                     7tmA_OR10A-like; cd15225"
                     /db_xref="CDD:320353"
     misc_feature    175..255
                     /gene="LOC116741743"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320353"
     misc_feature    order(241..243,250..255,289..306,310..315,322..324,
                     457..459,463..477,580..582,589..597,601..609,613..618,
                     751..753,760..765,769..774,781..783,799..804,808..816,
                     823..825,832..837)
                     /gene="LOC116741743"
                     /note="putative ligand binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:320353"
     misc_feature    289..381
                     /gene="LOC116741743"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320353"
     misc_feature    418..483
                     /gene="LOC116741743"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320353"
     misc_feature    580..672
                     /gene="LOC116741743"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320353"
     misc_feature    691..783
                     /gene="LOC116741743"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320353"
     misc_feature    802..879
                     /gene="LOC116741743"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320353"
ORIGIN      
        1 atggagtggg tcaatgaaac ctcagtgaga gagtttttct tccttgactt ctcatctctg
       61 gctgagctgc aacagctgct cttcgttgtc tttctgcttc tgtacctgtt catgctgggc
      121 accaatgcca tcatcatttc taccattgta ctggacagag ccctccatac acctatgtac
      181 ttcttccttg gtgtcctctc ctgttctgag acttgctaca ccttcatcat tatacccaag
      241 atgctggttg acctgctggc ccagaagaag accatctcct tcctgggctg tgccatccaa
      301 atgtttacct tcctcttcct catctgctct cactccttcc tgctggcagc catgggttat
      361 gatcgttatg tggccatctg taaccctctg cattacacag tgctcatggg ttatgggggg
      421 tgtttgggac ttgtggcggc tgcctgtgcc tgtggcttca ctgtctcagt ggtcatcacc
      481 tccctgatat ttggcctgcc attccactcc aaccatctcc atcactactt ctgtgatatc
      541 tctcctgtcc tcaagctggc atctcatcac tctcacctca gtcagttggt catattcatg
      601 cttggtgtgt ttgtcttggt tattccactg ttacttatcc tggtctccta tatccacgtc
      661 atctctgcca ttctaaaaat cccatcctct gttggaagat acaaagcttt ctctacttgt
      721 gcctcccatc tcattgtggt aactgttcat tatggttgtg cctctttcat ctacttaagg
      781 cccaaatcca attactcttc aagtcaagac accctaatat ctgtgtctta taccatcctc
      841 actccattgt tcaatccaat gatttacagt ctgagaagta aggaattcaa atcagccctt
      901 tga
//
LOCUS       XM_032608744             832 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus retinol binding protein 7 (RBP7), mRNA.
ACCESSION   XM_032608744
VERSION     XM_032608744.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 28% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-141               VOSU01000011.1     7710180-7710320
            142-310             VOSU01000011.1     7714727-7714895
            311-465             VOSU01000011.1     7726045-7726199
            466-466             "N"                1-1
            467-489             VOSU01000011.1     7726200-7726222
            490-591             VOSU01000011.1     7726342-7726443
            592-832             VOSU01000011.1     7733002-7733242
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..832
                     /gene="RBP7"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 Proteins, and 73% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116741750"
     CDS             1..642
                     /gene="RBP7"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: retinoid-binding protein 7"
                     /protein_id="XP_032464635.1"
                     /db_xref="GeneID:116741750"
                     /translation="MALPPTEGTSGAGILIHFCLKRLTSLNGTADKVCPNQVQLPDKF
                     SKPLLPAVPPRSRLPGHTFTSRVPTAHHQCRPQARHARRPQRHLEPAEQRQLGGYMLA
                     LDIDFATRKIARLLKPQKVIEQNGDSFTIHTNSKLQNYLVKFKVGREFDEDNKXLDNR
                     KCKSLVIWDNDRLTCVQKGQKKNRGWTHWIEGNQLHLEMFCEGQVCKQTFQRA"
     misc_feature    292..639
                     /gene="RBP7"
                     /note="lipocalin/cytosolic fatty acid-binding protein
                     family; Region: lipocalin_FABP; cl10502"
                     /db_xref="CDD:471979"
     misc_feature    order(358..360,364..366,385..387,391..393,397..399,
                     418..420,424..426,430..432,523..525,529..531,550..552,
                     556..558,562..564,583..585,589..591,595..597,616..618,
                     622..624,628..630)
                     /gene="RBP7"
                     /note="ligand binding cavity [chemical binding]; other
                     site"
                     /db_xref="CDD:381182"
ORIGIN      
        1 atggcccttc ctcccactga ggggacttca ggtgctggga ttctgatcca tttctgcctc
       61 aagcgtctta caagtctgaa tggtacagca gacaaggtgt gtcccaatca agttcaactg
      121 cctgataagt tttccaaacc actcctcccg gcggtcccgc cccggtcccg cctccccggc
      181 cacacattta cctcccgagt ccccaccgcc caccaccagt gccgccccca ggcccgccat
      241 gcccgccgac ctcagcggca cctggaacct gctgagcagc gacaacttgg gggctacatg
      301 ctggccctag atattgactt tgccacgcgt aagatagcca ggctgctgaa accacagaaa
      361 gtgattgagc agaatgggga ttcttttacc atccacacga acagcaagct tcagaactac
      421 cttgtgaaat ttaaagttgg aagagaattt gatgaggata acaaangcct ggataacaga
      481 aaatgcaaga gcttggtcat ctgggacaat gacagactca cctgtgtgca gaaggggcaa
      541 aagaagaaca gaggctggac ccattggatt gaagggaacc aactccacct ggaaatgttc
      601 tgtgaaggcc aggtgtgcaa acagacgttc cagagagctt gatctgtatc cagccgcaga
      661 gtccacatgt ggcagtggct taatgctgaa ttatattcca gaataaacag gtgttgatct
      721 gtcctggttt ggtggatggg gccttgtggt cagaaaggtg tcacacatcc tgtaccagaa
      781 gccatttgga ttgtgagaaa acttctcagc ttcaataaac ctgtccactg at
//
LOCUS       XM_032608758            1844 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat and Ig domain
            containing 4 (LINGO4), mRNA.
ACCESSION   XM_032608758
VERSION     XM_032608758.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1844
                     /gene="LINGO4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 84% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741754"
     CDS             71..1843
                     /gene="LINGO4"
                     /codon_start=1
                     /product="leucine-rich repeat and immunoglobulin-like
                     domain-containing nogo receptor-interacting protein 4"
                     /protein_id="XP_032464649.1"
                     /db_xref="GeneID:116741754"
                     /translation="MAAATTPKQAWPAVFFLLLLSGGSSGGCPAVCDCTSQPRAVLCA
                     HRRLEAVPGGLPLDTALLDLSGNRLWGLQRGMLSRLGLLRELDLSYNQLSTLEPGAFH
                     GLQSLLTLRLQGNRLRIVGPRVFSGLSSLTLLDIRLNQIVLFLDGAFGELGSLQQLEV
                     GDNHLVFVAPGAFAGLAKLSTLTLERCNLSTVPGLALARLPALGVLRLRELDIGRLPG
                     GALQGLGQLKELEIHHWPPLEALEPGSLTGLNLSSLAITRCNLSSVPFQALYHLSFLR
                     VLDLSQNPISAIPARRLSPLVRLQELRLSGACLTSIAAHAFHGLTAFHLLDVADNALQ
                     TLEETAFSSPDKLVTLRLSGNPLTCDCRLVWLLRLRRRLDFGTSPPACAGPQNVQGKS
                     LREFSDILPPGHFTCQPALIRKSGPRWVIAEEGGHAVFSCSGDGDPAPIVSWMRPQGA
                     WLGRAGRVRVLEDGTLEIRSVQLRDRGAYVCVVSNVAGNDSLRTWLEVIQVEPPNSTL
                     SDPNITMPGIPGPFFLDSRGIAMVLAVGFLPFLTSVTLCFGLIALWSKGKGRVKHHMT
                     FDFVAPRASGDKNSGGNRVTAKLF"
     misc_feature    152..247
                     /gene="LINGO4"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    <254..1288
                     /gene="LINGO4"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    254..316
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    317..388
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    389..460
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    461..532
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    533..604
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    605..676
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    677..748
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    749..892
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    893..964
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    965..1036
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1037..1099
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1109..1147
                     /gene="LINGO4"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1319..1564
                     /gene="LINGO4"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    1352..1366
                     /gene="LINGO4"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1391..1405
                     /gene="LINGO4"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1460..1474
                     /gene="LINGO4"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1502..1519
                     /gene="LINGO4"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1541..1552
                     /gene="LINGO4"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gcccccagcc ccgcacagat gcagtgccca acttgatgcc accctccagc ttctctggat
       61 tgaagagggg atggctgcgg ccactactcc aaagcaagcc tggcccgccg tatttttcct
      121 gctcctcctg tctgggggga gtagcggcgg ctgccctgct gtgtgtgact gtacctccca
      181 accccgggca gtgctctgtg cccaccggcg actggaggct gtaccagggg gactcccact
      241 ggacaccgcg ctcctggacc tgagtgggaa ccgcctatgg gggcttcagc ggggaatgct
      301 ctcccgcctg ggcctgctcc gggaactgga cctcagctac aaccagctgt ccaccctcga
      361 gccaggggcc ttccatggtc tgcagagcct gctcaccctg aggctgcagg gcaatcgtct
      421 gcgaatcgtg ggccccaggg tcttctcagg cctgtcttcc ctcacgctgc tggacattcg
      481 cctcaaccag attgtactct tcctcgatgg agctttcggg gagctaggca gcctccagca
      541 gctggaggtt ggggacaacc acctggtgtt tgtggctccg ggagcctttg ctggactggc
      601 caagctgagc accctcaccc tggagcgctg caacctcagc accgtgcctg gcctggccct
      661 ggcccgcctt ccagcgctag gggtcctaag gctccgagaa ttagatattg ggaggctgcc
      721 gggaggggcg ctgcaagggc tggggcagtt aaaggagctg gagatccatc attggccacc
      781 tctggaggct ctggagcctg ggagcctgac tgggctcaat ctcagcagct tggccatcac
      841 ccgctgcaat ctgagctcgg tgcccttcca agcgctgtac cacctgagct tcctcagggt
      901 cctggatctg tctcagaacc ccatctctgc catcccggcc cggaggctca gccccctggt
      961 gcggctccag gagctccgac tgtcaggggc atgcctcacc tccatcgctg cccacgcctt
     1021 ccatggtttg actgccttcc acctcctaga cgtggcggat aacgcccttc agacactgga
     1081 ggaaacagcc ttctcttctc cagacaaact ggtcaccctg aggctgtctg gtaaccccct
     1141 gacctgtgac tgccgcctcg tctggctgct ccggctccgc cgccgcctgg actttggcac
     1201 atccccccct gcctgtgccg gcccccagaa cgtccagggg aagagcctga gggagttttc
     1261 agacatccta cctccagggc acttcacttg ccaaccagcc ctgatccgaa agtccgggcc
     1321 acgatgggtc attgcagagg agggggggca tgccgttttc tcctgctctg gagatggaga
     1381 cccagccccc atcgtctcct ggatgaggcc tcagggggct tggctgggaa gggccgggag
     1441 agtaagggtc ctggaggatg ggacgctgga gatccgctct gtgcagctac gggatagagg
     1501 ggcctatgtc tgtgtggtca gcaatgtagc tgggaatgac tccctgagga cgtggctgga
     1561 agtaatccaa gttgaaccac caaatagcac tctctctgac cccaacatta ccatgccagg
     1621 gatcccaggg cctttcttcc tggatagcag aggcatagct atggtgctgg cagtcggctt
     1681 cctccccttc ctcacctcgg taaccctgtg ctttggcctc attgccctct ggagcaaagg
     1741 caaaggccgg gtcaaacatc acatgacctt tgactttgtg gcaccccgag cctctgggga
     1801 taagaactct gggggtaacc gggtcactgc caagctcttc tgac
//
LOCUS       XM_032608770            1775 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAR related orphan receptor C (RORC),
            transcript variant X1, mRNA.
ACCESSION   XM_032608770
VERSION     XM_032608770.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1775
                     /gene="RORC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 32 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741760"
     CDS             48..1643
                     /gene="RORC"
                     /codon_start=1
                     /product="nuclear receptor ROR-gamma isoform X1"
                     /protein_id="XP_032464661.1"
                     /db_xref="GeneID:116741760"
                     /translation="MDRAPQRHHRASQATEEAVLPSGMTKELLAAKKTHTSQIEVIPC
                     KICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQ
                     KCLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQQRQQQQREQAAKTPPAGAQGADPL
                     ACTLGLPDGQLPLGSSPDLPEASACPPSLLRAPGCGPSYSNSLAKAGLNGASYHLEYS
                     PERGKTEGRENCYGTGSQPTPDRRGLHFEDPRHPGLGEPGRGPDSYFSPSFRSTPEAP
                     YASLTEIEHLVQNVCKSYRETCQLRLEDLLGQRSTVFSREEVAGYQRKSMWEMWERCA
                     HRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNHTVFFE
                     GKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINANRPGLQEKR
                     KVEQLQYSLELAFHHHLCKTHRHGILAKLPPKGKLRSLCSQHVEKLQTFQHLHPIVVQ
                     AAFPPLYKELFSTEIESPEGLSK"
     misc_feature    156..440
                     /gene="RORC"
                     /note="DNA-binding domain of Retinoid-related orphan
                     receptors (RORs) is composed of two C4-type zinc fingers;
                     Region: NR_DBD_ROR; cd06968"
                     /db_xref="CDD:143526"
     misc_feature    order(177..179,186..188,228..230,237..239,285..287,
                     303..305,333..335,342..344)
                     /gene="RORC"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143526"
     misc_feature    order(207..215,231..236,240..242,246..248,255..257,
                     264..266,324..329,336..338,345..347,378..380,387..389)
                     /gene="RORC"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:143526"
     misc_feature    888..1604
                     /gene="RORC"
                     /note="The ligand binding domain of Retinoid-related
                     orphan receptors, of the nuclear receptor superfamily;
                     Region: NR_LBD_ROR_like; cd06939"
                     /db_xref="CDD:132737"
     misc_feature    order(939..947,1035..1037,1044..1049,1053..1058,
                     1065..1067,1167..1169,1176..1181,1185..1190,1212..1220,
                     1248..1250,1257..1259,1284..1286,1521..1523)
                     /gene="RORC"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132737"
     misc_feature    order(1092..1094,1122..1124,1131..1136,1143..1148,
                     1584..1589,1596..1601)
                     /gene="RORC"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132737"
ORIGIN      
        1 ctcctgggca gccagggcag caaggacagc accaagggag ttgccccatg gacagggccc
       61 cacagagaca ccaccgagcc tcgcaggcaa cggaggaagc cgtcctgcct tcagggatga
      121 caaaggagct gctggctgca aagaagaccc acacctcaca aattgaagtg atcccttgca
      181 aaatctgtgg ggacaaatca tctgggatcc attacggggt tatcacctgt gaggggtgca
      241 agggtttctt ccgccggagc cagcagtgta acgtggccta ctcctgcacc cgtcagcaga
      301 actgccccat tgaccgcact agccgaaacc gatgccagca ctgccgcctg cagaaatgcc
      361 tggccctggg catgtcccga gacgctgtca agtttggccg catgtccaag aagcaaaggg
      421 acagcctaca tgctgaggtg cagaaacaac tgcaacagcg gcaacagcag caaagggaac
      481 aagcggccaa gacccctcct gcaggagccc aaggagcaga ccccctcgcc tgcaccttgg
      541 ggctcccaga tgggcagctg cccctgggct cctcgcctga cctgccggag gcctcagcct
      601 gtccccccag tctcctgaga gccccaggct gcgggccctc ctactccaac agcttggcca
      661 aggccgggct caacggggcc tcgtaccacc tggaatacag ccctgagcgg ggcaagaccg
      721 agggcagaga gaactgctat ggcacaggca gccagccgac ccctgacagg cgtggactcc
      781 acttcgagga ccccaggcac cctgggcttg gggaaccagg acggggcccg gacagctact
      841 tcagccccag tttccgcagc accccagagg cgccttatgc ctccctgacg gagattgagc
      901 atctggtgca gaacgtttgt aagtcctacc gagagacgtg tcagctgcgg ctggaggacc
      961 tgctcggaca gcgctccacc gtcttctccc gagaggaggt ggccggctac cagaggaagt
     1021 caatgtggga gatgtgggaa cgctgtgccc accgcctcac cgaggccatt cagtacgtgg
     1081 tggagttcgc taagaggctc tcgggcttta tggagctctg ccagaatgac cagatcgtgc
     1141 tactcaaagc aggagccatg gaagtagtgc tggtcaggat gtgccgggcc tacaatgctg
     1201 acaaccatac agtctttttt gaaggcaaat acggtggcat ggagctcttc cgagccttgg
     1261 gctgcagcga gctcatcagc tccatctttg acttctccca ctccctgagt gccttgcatt
     1321 tttccgagga cgagattgcc ctctacacgg ccctcgtcct catcaacgcc aaccggccag
     1381 ggctccaaga gaaaaggaaa gtagaacagc tgcagtacag tctggagctg gcctttcatc
     1441 atcatctctg caagactcat cgccacggca tcctggcaaa gctgccaccc aaggggaagc
     1501 ttcggagcct gtgtagccag catgtggaaa agctgcaaac cttccagcat ctccacccca
     1561 tcgtggtcca agctgctttc cctccactct acaaggaact cttcagcact gaaatcgagt
     1621 cacctgaggg gctgtccaag tgacgttccc ttccctagag cctcgtggct caccttcccc
     1681 ttggcctttt cctttcttgt gcgccctgga gggtggtctc tgcctgtttt ttggggggtg
     1741 agcaaatgcg gagactggct ttctgcccac cagcc
//
LOCUS       XM_032608778            1740 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAR related orphan receptor C (RORC),
            transcript variant X2, mRNA.
ACCESSION   XM_032608778
VERSION     XM_032608778.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1740
                     /gene="RORC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741760"
     CDS             49..1608
                     /gene="RORC"
                     /codon_start=1
                     /product="nuclear receptor ROR-gamma isoform X2"
                     /protein_id="XP_032464669.1"
                     /db_xref="GeneID:116741760"
                     /translation="MDRAPQRHHRASQATEEAVLPSGMTKELLAAKKTHTSQIEVIPC
                     KICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQ
                     KCLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQQRQQQQREQAAKTPPAGAQGADPL
                     ACTLGLPDGQLPLGSSPDLPEASACPPSLLRAPGCGPSYSNSLAKAGLNGASYHLEYS
                     PERGKTEGRENCYGTGSQPTPDRRGLHFEDPRHPGLGEPGRGPDSYFSPSFRSTPEAP
                     YASLTEIEHLVQNVCKSYRETCQLRLEDLLGQRSTVFSREEVAGYQRKSMWEMWERCA
                     HRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNHTVFFE
                     GCSELISSIFDFSHSLSALHFSEDEIALYTALVLINANRPGLQEKRKVEQLQYSLELA
                     FHHHLCKTHRHGILAKLPPKGKLRSLCSQHVEKLQTFQHLHPIVVQAAFPPLYKELFS
                     TEIESPEGLSK"
     misc_feature    157..441
                     /gene="RORC"
                     /note="DNA-binding domain of Retinoid-related orphan
                     receptors (RORs) is composed of two C4-type zinc fingers;
                     Region: NR_DBD_ROR; cd06968"
                     /db_xref="CDD:143526"
     misc_feature    order(178..180,187..189,229..231,238..240,286..288,
                     304..306,334..336,343..345)
                     /gene="RORC"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143526"
     misc_feature    order(208..216,232..237,241..243,247..249,256..258,
                     265..267,325..330,337..339,346..348,379..381,388..390)
                     /gene="RORC"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:143526"
     misc_feature    889..1569
                     /gene="RORC"
                     /note="The ligand binding domain of Retinoid-related
                     orphan receptors, of the nuclear receptor superfamily;
                     Region: NR_LBD_ROR_like; cd06939"
                     /db_xref="CDD:132737"
     misc_feature    order(940..948,1036..1038,1045..1050,1054..1059,
                     1066..1068,1168..1170,1177..1182,1186..1191,1213..1221,
                     1249..1251,1486..1488)
                     /gene="RORC"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132737"
     misc_feature    order(1093..1095,1123..1125,1132..1137,1144..1149,
                     1549..1554,1561..1566)
                     /gene="RORC"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132737"
ORIGIN      
        1 cctcctgggc agccagggca gcaaggacag caccaaggga gttgccccat ggacagggcc
       61 ccacagagac accaccgagc ctcgcaggca acggaggaag ccgtcctgcc ttcagggatg
      121 acaaaggagc tgctggctgc aaagaagacc cacacctcac aaattgaagt gatcccttgc
      181 aaaatctgtg gggacaaatc atctgggatc cattacgggg ttatcacctg tgaggggtgc
      241 aagggtttct tccgccggag ccagcagtgt aacgtggcct actcctgcac ccgtcagcag
      301 aactgcccca ttgaccgcac tagccgaaac cgatgccagc actgccgcct gcagaaatgc
      361 ctggccctgg gcatgtcccg agacgctgtc aagtttggcc gcatgtccaa gaagcaaagg
      421 gacagcctac atgctgaggt gcagaaacaa ctgcaacagc ggcaacagca gcaaagggaa
      481 caagcggcca agacccctcc tgcaggagcc caaggagcag accccctcgc ctgcaccttg
      541 gggctcccag atgggcagct gcccctgggc tcctcgcctg acctgccgga ggcctcagcc
      601 tgtcccccca gtctcctgag agccccaggc tgcgggccct cctactccaa cagcttggcc
      661 aaggccgggc tcaacggggc ctcgtaccac ctggaataca gccctgagcg gggcaagacc
      721 gagggcagag agaactgcta tggcacaggc agccagccga cccctgacag gcgtggactc
      781 cacttcgagg accccaggca ccctgggctt ggggaaccag gacggggccc ggacagctac
      841 ttcagcccca gtttccgcag caccccagag gcgccttatg cctccctgac ggagattgag
      901 catctggtgc agaacgtttg taagtcctac cgagagacgt gtcagctgcg gctggaggac
      961 ctgctcggac agcgctccac cgtcttctcc cgagaggagg tggccggcta ccagaggaag
     1021 tcaatgtggg agatgtggga acgctgtgcc caccgcctca ccgaggccat tcagtacgtg
     1081 gtggagttcg ctaagaggct ctcgggcttt atggagctct gccagaatga ccagatcgtg
     1141 ctactcaaag caggagccat ggaagtagtg ctggtcagga tgtgccgggc ctacaatgct
     1201 gacaaccata cagtcttttt tgaaggctgc agcgagctca tcagctccat ctttgacttc
     1261 tcccactccc tgagtgcctt gcatttttcc gaggacgaga ttgccctcta cacggccctc
     1321 gtcctcatca acgccaaccg gccagggctc caagagaaaa ggaaagtaga acagctgcag
     1381 tacagtctgg agctggcctt tcatcatcat ctctgcaaga ctcatcgcca cggcatcctg
     1441 gcaaagctgc cacccaaggg gaagcttcgg agcctgtgta gccagcatgt ggaaaagctg
     1501 caaaccttcc agcatctcca ccccatcgtg gtccaagctg ctttccctcc actctacaag
     1561 gaactcttca gcactgaaat cgagtcacct gaggggctgt ccaagtgacg ttcccttccc
     1621 tagagcctcg tggctcacct tccccttggc cttttccttt cttgtgcgcc ctggagggtg
     1681 gtctctgcct gttttttggg gggtgagcaa atgcggagac tggctttctg cccaccagcc
//
LOCUS       XM_032608788            1676 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAR related orphan receptor C (RORC),
            transcript variant X3, mRNA.
ACCESSION   XM_032608788
VERSION     XM_032608788.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1676
                     /gene="RORC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741760"
     CDS             24..1544
                     /gene="RORC"
                     /codon_start=1
                     /product="nuclear receptor ROR-gamma isoform X3"
                     /protein_id="XP_032464679.1"
                     /db_xref="GeneID:116741760"
                     /translation="MDRAPQRHHRASQELLAAKKTHTSQIEVIPCKICGDKSSGIHYG
                     VITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVK
                     FGRMSKKQRDSLHAEVQKQLQQRQQQQREQAAKTPPAGAQGADPLACTLGLPDGQLPL
                     GSSPDLPEASACPPSLLRAPGCGPSYSNSLAKAGLNGASYHLEYSPERGKTEGRENCY
                     GTGSQPTPDRRGLHFEDPRHPGLGEPGRGPDSYFSPSFRSTPEAPYASLTEIEHLVQN
                     VCKSYRETCQLRLEDLLGQRSTVFSREEVAGYQRKSMWEMWERCAHRLTEAIQYVVEF
                     AKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNHTVFFEGCSELISSIFDFS
                     HSLSALHFSEDEIALYTALVLINANRPGLQEKRKVEQLQYSLELAFHHHLCKTHRHGI
                     LAKLPPKGKLRSLCSQHVEKLQTFQHLHPIVVQAAFPPLYKELFSTEIESPEGLSK"
     misc_feature    93..377
                     /gene="RORC"
                     /note="DNA-binding domain of Retinoid-related orphan
                     receptors (RORs) is composed of two C4-type zinc fingers;
                     Region: NR_DBD_ROR; cd06968"
                     /db_xref="CDD:143526"
     misc_feature    order(114..116,123..125,165..167,174..176,222..224,
                     240..242,270..272,279..281)
                     /gene="RORC"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143526"
     misc_feature    order(144..152,168..173,177..179,183..185,192..194,
                     201..203,261..266,273..275,282..284,315..317,324..326)
                     /gene="RORC"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:143526"
     misc_feature    825..1505
                     /gene="RORC"
                     /note="The ligand binding domain of Retinoid-related
                     orphan receptors, of the nuclear receptor superfamily;
                     Region: NR_LBD_ROR_like; cd06939"
                     /db_xref="CDD:132737"
     misc_feature    order(876..884,972..974,981..986,990..995,1002..1004,
                     1104..1106,1113..1118,1122..1127,1149..1157,1185..1187,
                     1422..1424)
                     /gene="RORC"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132737"
     misc_feature    order(1029..1031,1059..1061,1068..1073,1080..1085,
                     1485..1490,1497..1502)
                     /gene="RORC"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132737"
ORIGIN      
        1 gacagcacca agggagttgc cccatggaca gggccccaca gagacaccac cgagcctcgc
       61 aggagctgct ggctgcaaag aagacccaca cctcacaaat tgaagtgatc ccttgcaaaa
      121 tctgtgggga caaatcatct gggatccatt acggggttat cacctgtgag gggtgcaagg
      181 gtttcttccg ccggagccag cagtgtaacg tggcctactc ctgcacccgt cagcagaact
      241 gccccattga ccgcactagc cgaaaccgat gccagcactg ccgcctgcag aaatgcctgg
      301 ccctgggcat gtcccgagac gctgtcaagt ttggccgcat gtccaagaag caaagggaca
      361 gcctacatgc tgaggtgcag aaacaactgc aacagcggca acagcagcaa agggaacaag
      421 cggccaagac ccctcctgca ggagcccaag gagcagaccc cctcgcctgc accttggggc
      481 tcccagatgg gcagctgccc ctgggctcct cgcctgacct gccggaggcc tcagcctgtc
      541 cccccagtct cctgagagcc ccaggctgcg ggccctccta ctccaacagc ttggccaagg
      601 ccgggctcaa cggggcctcg taccacctgg aatacagccc tgagcggggc aagaccgagg
      661 gcagagagaa ctgctatggc acaggcagcc agccgacccc tgacaggcgt ggactccact
      721 tcgaggaccc caggcaccct gggcttgggg aaccaggacg gggcccggac agctacttca
      781 gccccagttt ccgcagcacc ccagaggcgc cttatgcctc cctgacggag attgagcatc
      841 tggtgcagaa cgtttgtaag tcctaccgag agacgtgtca gctgcggctg gaggacctgc
      901 tcggacagcg ctccaccgtc ttctcccgag aggaggtggc cggctaccag aggaagtcaa
      961 tgtgggagat gtgggaacgc tgtgcccacc gcctcaccga ggccattcag tacgtggtgg
     1021 agttcgctaa gaggctctcg ggctttatgg agctctgcca gaatgaccag atcgtgctac
     1081 tcaaagcagg agccatggaa gtagtgctgg tcaggatgtg ccgggcctac aatgctgaca
     1141 accatacagt cttttttgaa ggctgcagcg agctcatcag ctccatcttt gacttctccc
     1201 actccctgag tgccttgcat ttttccgagg acgagattgc cctctacacg gccctcgtcc
     1261 tcatcaacgc caaccggcca gggctccaag agaaaaggaa agtagaacag ctgcagtaca
     1321 gtctggagct ggcctttcat catcatctct gcaagactca tcgccacggc atcctggcaa
     1381 agctgccacc caaggggaag cttcggagcc tgtgtagcca gcatgtggaa aagctgcaaa
     1441 ccttccagca tctccacccc atcgtggtcc aagctgcttt ccctccactc tacaaggaac
     1501 tcttcagcac tgaaatcgag tcacctgagg ggctgtccaa gtgacgttcc cttccctaga
     1561 gcctcgtggc tcaccttccc cttggccttt tcctttcttg tgcgccctgg agggtggtct
     1621 ctgcctgttt tttggggggt gagcaaatgc ggagactggc tttctgccca ccagcc
//
LOCUS       XM_032608797            1756 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAR related orphan receptor C (RORC),
            transcript variant X4, mRNA.
ACCESSION   XM_032608797
VERSION     XM_032608797.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1756
                     /gene="RORC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 32 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741760"
     CDS             131..1624
                     /gene="RORC"
                     /codon_start=1
                     /product="nuclear receptor ROR-gamma isoform X4"
                     /protein_id="XP_032464688.1"
                     /db_xref="GeneID:116741760"
                     /translation="MRTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAY
                     SCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQ
                     QRQQQQREQAAKTPPAGAQGADPLACTLGLPDGQLPLGSSPDLPEASACPPSLLRAPG
                     CGPSYSNSLAKAGLNGASYHLEYSPERGKTEGRENCYGTGSQPTPDRRGLHFEDPRHP
                     GLGEPGRGPDSYFSPSFRSTPEAPYASLTEIEHLVQNVCKSYRETCQLRLEDLLGQRS
                     TVFSREEVAGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKA
                     GAMEVVLVRMCRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFS
                     EDEIALYTALVLINANRPGLQEKRKVEQLQYSLELAFHHHLCKTHRHGILAKLPPKGK
                     LRSLCSQHVEKLQTFQHLHPIVVQAAFPPLYKELFSTEIESPEGLSK"
     misc_feature    140..421
                     /gene="RORC"
                     /note="DNA-binding domain of Retinoid-related orphan
                     receptors (RORs) is composed of two C4-type zinc fingers;
                     Region: NR_DBD_ROR; cd06968"
                     /db_xref="CDD:143526"
     misc_feature    order(158..160,167..169,209..211,218..220,266..268,
                     284..286,314..316,323..325)
                     /gene="RORC"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143526"
     misc_feature    order(188..196,212..217,221..223,227..229,236..238,
                     245..247,305..310,317..319,326..328,359..361,368..370)
                     /gene="RORC"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:143526"
     misc_feature    869..1585
                     /gene="RORC"
                     /note="The ligand binding domain of Retinoid-related
                     orphan receptors, of the nuclear receptor superfamily;
                     Region: NR_LBD_ROR_like; cd06939"
                     /db_xref="CDD:132737"
     misc_feature    order(920..928,1016..1018,1025..1030,1034..1039,
                     1046..1048,1148..1150,1157..1162,1166..1171,1193..1201,
                     1229..1231,1238..1240,1265..1267,1502..1504)
                     /gene="RORC"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132737"
     misc_feature    order(1073..1075,1103..1105,1112..1117,1124..1129,
                     1565..1570,1577..1582)
                     /gene="RORC"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132737"
ORIGIN      
        1 cccagcagca ttgggggaga gctaggtgca gagccacagc ccgcagcccc actgccatct
       61 gcgccccatc cctggaacac ccctgctgag aaggacaggg agcccaggcg gcaaagccca
      121 cgactcagtc atgagaacac aaattgaagt gatcccttgc aaaatctgtg gggacaaatc
      181 atctgggatc cattacgggg ttatcacctg tgaggggtgc aagggtttct tccgccggag
      241 ccagcagtgt aacgtggcct actcctgcac ccgtcagcag aactgcccca ttgaccgcac
      301 tagccgaaac cgatgccagc actgccgcct gcagaaatgc ctggccctgg gcatgtcccg
      361 agacgctgtc aagtttggcc gcatgtccaa gaagcaaagg gacagcctac atgctgaggt
      421 gcagaaacaa ctgcaacagc ggcaacagca gcaaagggaa caagcggcca agacccctcc
      481 tgcaggagcc caaggagcag accccctcgc ctgcaccttg gggctcccag atgggcagct
      541 gcccctgggc tcctcgcctg acctgccgga ggcctcagcc tgtcccccca gtctcctgag
      601 agccccaggc tgcgggccct cctactccaa cagcttggcc aaggccgggc tcaacggggc
      661 ctcgtaccac ctggaataca gccctgagcg gggcaagacc gagggcagag agaactgcta
      721 tggcacaggc agccagccga cccctgacag gcgtggactc cacttcgagg accccaggca
      781 ccctgggctt ggggaaccag gacggggccc ggacagctac ttcagcccca gtttccgcag
      841 caccccagag gcgccttatg cctccctgac ggagattgag catctggtgc agaacgtttg
      901 taagtcctac cgagagacgt gtcagctgcg gctggaggac ctgctcggac agcgctccac
      961 cgtcttctcc cgagaggagg tggccggcta ccagaggaag tcaatgtggg agatgtggga
     1021 acgctgtgcc caccgcctca ccgaggccat tcagtacgtg gtggagttcg ctaagaggct
     1081 ctcgggcttt atggagctct gccagaatga ccagatcgtg ctactcaaag caggagccat
     1141 ggaagtagtg ctggtcagga tgtgccgggc ctacaatgct gacaaccata cagtcttttt
     1201 tgaaggcaaa tacggtggca tggagctctt ccgagccttg ggctgcagcg agctcatcag
     1261 ctccatcttt gacttctccc actccctgag tgccttgcat ttttccgagg acgagattgc
     1321 cctctacacg gccctcgtcc tcatcaacgc caaccggcca gggctccaag agaaaaggaa
     1381 agtagaacag ctgcagtaca gtctggagct ggcctttcat catcatctct gcaagactca
     1441 tcgccacggc atcctggcaa agctgccacc caaggggaag cttcggagcc tgtgtagcca
     1501 gcatgtggaa aagctgcaaa ccttccagca tctccacccc atcgtggtcc aagctgcttt
     1561 ccctccactc tacaaggaac tcttcagcac tgaaatcgag tcacctgagg ggctgtccaa
     1621 gtgacgttcc cttccctaga gcctcgtggc tcaccttccc cttggccttt tcctttcttg
     1681 tgcgccctgg agggtggtct ctgcctgttt tttggggggt gagcaaatgc ggagactggc
     1741 tttctgccca ccagcc
//
LOCUS       XM_032608807            1720 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAR related orphan receptor C (RORC),
            transcript variant X5, mRNA.
ACCESSION   XM_032608807
VERSION     XM_032608807.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1720
                     /gene="RORC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741760"
     CDS             131..1588
                     /gene="RORC"
                     /codon_start=1
                     /product="nuclear receptor ROR-gamma isoform X5"
                     /protein_id="XP_032464698.1"
                     /db_xref="GeneID:116741760"
                     /translation="MRTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAY
                     SCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQ
                     QRQQQQREQAAKTPPAGAQGADPLACTLGLPDGQLPLGSSPDLPEASACPPSLLRAPG
                     CGPSYSNSLAKAGLNGASYHLEYSPERGKTEGRENCYGTGSQPTPDRRGLHFEDPRHP
                     GLGEPGRGPDSYFSPSFRSTPEAPYASLTEIEHLVQNVCKSYRETCQLRLEDLLGQRS
                     TVFSREEVAGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKA
                     GAMEVVLVRMCRAYNADNHTVFFEGCSELISSIFDFSHSLSALHFSEDEIALYTALVL
                     INANRPGLQEKRKVEQLQYSLELAFHHHLCKTHRHGILAKLPPKGKLRSLCSQHVEKL
                     QTFQHLHPIVVQAAFPPLYKELFSTEIESPEGLSK"
     misc_feature    140..421
                     /gene="RORC"
                     /note="DNA-binding domain of Retinoid-related orphan
                     receptors (RORs) is composed of two C4-type zinc fingers;
                     Region: NR_DBD_ROR; cd06968"
                     /db_xref="CDD:143526"
     misc_feature    order(158..160,167..169,209..211,218..220,266..268,
                     284..286,314..316,323..325)
                     /gene="RORC"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143526"
     misc_feature    order(188..196,212..217,221..223,227..229,236..238,
                     245..247,305..310,317..319,326..328,359..361,368..370)
                     /gene="RORC"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:143526"
     misc_feature    869..1549
                     /gene="RORC"
                     /note="The ligand binding domain of Retinoid-related
                     orphan receptors, of the nuclear receptor superfamily;
                     Region: NR_LBD_ROR_like; cd06939"
                     /db_xref="CDD:132737"
     misc_feature    order(920..928,1016..1018,1025..1030,1034..1039,
                     1046..1048,1148..1150,1157..1162,1166..1171,1193..1201,
                     1229..1231,1466..1468)
                     /gene="RORC"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:132737"
     misc_feature    order(1073..1075,1103..1105,1112..1117,1124..1129,
                     1529..1534,1541..1546)
                     /gene="RORC"
                     /note="coactivator recognition site [polypeptide binding];
                     other site"
                     /db_xref="CDD:132737"
ORIGIN      
        1 cccagcagca ttgggggaga gctaggtgca gagccacagc ccgcagcccc actgccatct
       61 gcgccccatc cctggaacac ccctgctgag aaggacaggg agcccaggcg gcaaagccca
      121 cgactcagtc atgagaacac aaattgaagt gatcccttgc aaaatctgtg gggacaaatc
      181 atctgggatc cattacgggg ttatcacctg tgaggggtgc aagggtttct tccgccggag
      241 ccagcagtgt aacgtggcct actcctgcac ccgtcagcag aactgcccca ttgaccgcac
      301 tagccgaaac cgatgccagc actgccgcct gcagaaatgc ctggccctgg gcatgtcccg
      361 agacgctgtc aagtttggcc gcatgtccaa gaagcaaagg gacagcctac atgctgaggt
      421 gcagaaacaa ctgcaacagc ggcaacagca gcaaagggaa caagcggcca agacccctcc
      481 tgcaggagcc caaggagcag accccctcgc ctgcaccttg gggctcccag atgggcagct
      541 gcccctgggc tcctcgcctg acctgccgga ggcctcagcc tgtcccccca gtctcctgag
      601 agccccaggc tgcgggccct cctactccaa cagcttggcc aaggccgggc tcaacggggc
      661 ctcgtaccac ctggaataca gccctgagcg gggcaagacc gagggcagag agaactgcta
      721 tggcacaggc agccagccga cccctgacag gcgtggactc cacttcgagg accccaggca
      781 ccctgggctt ggggaaccag gacggggccc ggacagctac ttcagcccca gtttccgcag
      841 caccccagag gcgccttatg cctccctgac ggagattgag catctggtgc agaacgtttg
      901 taagtcctac cgagagacgt gtcagctgcg gctggaggac ctgctcggac agcgctccac
      961 cgtcttctcc cgagaggagg tggccggcta ccagaggaag tcaatgtggg agatgtggga
     1021 acgctgtgcc caccgcctca ccgaggccat tcagtacgtg gtggagttcg ctaagaggct
     1081 ctcgggcttt atggagctct gccagaatga ccagatcgtg ctactcaaag caggagccat
     1141 ggaagtagtg ctggtcagga tgtgccgggc ctacaatgct gacaaccata cagtcttttt
     1201 tgaaggctgc agcgagctca tcagctccat ctttgacttc tcccactccc tgagtgcctt
     1261 gcatttttcc gaggacgaga ttgccctcta cacggccctc gtcctcatca acgccaaccg
     1321 gccagggctc caagagaaaa ggaaagtaga acagctgcag tacagtctgg agctggcctt
     1381 tcatcatcat ctctgcaaga ctcatcgcca cggcatcctg gcaaagctgc cacccaaggg
     1441 gaagcttcgg agcctgtgta gccagcatgt ggaaaagctg caaaccttcc agcatctcca
     1501 ccccatcgtg gtccaagctg ctttccctcc actctacaag gaactcttca gcactgaaat
     1561 cgagtcacct gaggggctgt ccaagtgacg ttcccttccc tagagcctcg tggctcacct
     1621 tccccttggc cttttccttt cttgtgcgcc ctggagggtg gtctctgcct gttttttggg
     1681 gggtgagcaa atgcggagac tggctttctg cccaccagcc
//
LOCUS       XM_032608833            2447 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 7 (SLAMF7), transcript
            variant X1, mRNA.
ACCESSION   XM_032608833
VERSION     XM_032608833.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2447
                     /gene="SLAMF7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741781"
     CDS             29..1048
                     /gene="SLAMF7"
                     /codon_start=1
                     /product="SLAM family member 7 isoform X1"
                     /protein_id="XP_032464724.1"
                     /db_xref="GeneID:116741781"
                     /translation="MLSSTACFTFIFLLCQLTGPAASAVLKKLVGALGGSVNFPLNLS
                     VDPIDSIIWVFNTTTLVTIQPKLADKKALIIVTRHRNKERVNFPHEGYSLKLSKLKKN
                     DSGVYRVEIHSSSLQDPLTQEYELRVYEHLSKPKVIIGLQNNKNGTCVTNLTCSMEQG
                     GEDVTYSWKSLGQATNESHSGSTLPISWRQEKRDMTFICMARNPISSNSSNPIFAWKL
                     CEGAAGGLATTVILKLLLSLTLLCFIALVLIILIIRRERRKESIEEKKGLNLHPETLN
                     YSPTFGETSEYDTISYLNSTVPEENAVNTLYSTVQIPPKQVEKSHSLSTLPDTPRKFT
                     HENVN"
     misc_feature    107..415
                     /gene="SLAMF7"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    137..151
                     /gene="SLAMF7"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    176..190
                     /gene="SLAMF7"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    302..316
                     /gene="SLAMF7"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    344..361
                     /gene="SLAMF7"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    389..400
                     /gene="SLAMF7"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ttttagtgac tgacatccaa agagcaatat gctttcttcc acggcatgct tcaccttcat
       61 ctttctcctc tgccagctca cagggccagc agcctctgca gtactgaaga agctagttgg
      121 tgcccttggt gggtctgtga atttcccact gaatctctca gtagatccaa ttgacagcat
      181 tatctgggtc ttcaacacaa ccactctcgt caccatacag ccaaagttgg cagacaaaaa
      241 agcccttatc atagtgaccc gacatcgtaa caaggaaagg gtgaatttcc cacatgaagg
      301 ctactccctg aagctcagca aactgaagaa gaatgactca ggtgtctacc gtgtggagat
      361 acacagctca agcctccagg atcccctaac ccaggagtat gagctgcgtg tctatgagca
      421 cctgtcaaag cccaaagtca tcataggtct gcagaacaat aagaatggca catgtgtaac
      481 caatctgaca tgttccatgg aacagggagg agaggatgta acttacagct ggaagtccct
      541 gggacaggca accaatgagt cccatagtgg ctccaccctc cccatatcct ggaggcagga
      601 gaaaagggat atgaccttca tttgcatggc cagaaacccc atcagcagca actcctcaaa
      661 ccccatcttt gcctggaagc tctgtgaagg tgctgctggt ggcctggcta ccactgtgat
      721 cctcaaactc ctgttgtcac tcaccctgct ctgtttcatt gcactggtgc taattatttt
      781 gatcatacga agagaaagaa gaaaagagtc cattgaagag aagaagggac tgaaccttca
      841 tccagaaact cttaactact cccccacttt tggagagacc tcggagtatg acacaatctc
      901 ttacttaaat agcactgtac cagaggaaaa tgcagtgaat acactttatt ccactgtgca
      961 aataccccca aagcaggtag agaaatccca ctcactgtcc acgttgccag acacaccaag
     1021 gaaatttacc catgagaatg tcaactaagc agccatgtgc tccaaagaaa atggtcaaaa
     1081 gaatccactg acttaatcaa aaacatcaag gaagaatgaa ggacactgac ttccttccag
     1141 aataaagtat cccttaggtt cctacagact taagagttcc taatctggga atttcctggt
     1201 ggtccagtgg ttaggactct gtgctttcac tgctgaggtc cggggttcaa tccctggttg
     1261 gggaactaaa atcccacaag cagtgtggtg aggccaaaaa aaaaaaaaaa gagagagaga
     1321 gagttcttaa tcctacccac tgctgagaaa tctcttcaaa tccagaatcc ctcctggaaa
     1381 tgtgattgtg aatttatcag ctgactcaaa gcaagggctt agaagcatct ctgttgaaat
     1441 gtaaatgcgg tttcacacat ttgaatgaca gctcccattc cagcgtttgg agatgaggaa
     1501 tataccaagg gtttggttgc caagagggca agaacttcgg agcagccagc tgatgttccc
     1561 cgcagaagca gaagacagca gtcagaaatg gatttattta ctgactcatc aacgacgtgc
     1621 ctggcactgt gcttactgtg attttcgtca gatgtgctct ctgttctcct gaaactgacc
     1681 cttcatgaat tatttccgtg ggcagtgaca tcaggcctga ccactgattc ccaacaccca
     1741 gggggtcagg tgtggattca caggacttgg gagtcaaaga acacaaggac agagaagcca
     1801 ggtagaagac tcagtttggc tgagtgaaaa ctcagaagtg tgattgacca ctgccccagc
     1861 ttcatttaca cttttgtgct gcaagggaga aacccaggcc ttaggcctat gcaggagccc
     1921 atctcagtgg tgagctaggg aaagctgagt tagaggattg tgattagtgg atgttaggtt
     1981 cctggacagg tgtttcccat aagtgcaggc tgacttaggc ttagattcgt gatgtgggct
     2041 ggaccactgg ggcagctacc attttgtggg tccaaatata tgaattatta gaaatgaagt
     2101 gaagaaatgt gtgttaaagt ttgtgaaagg agaaaatatc tgctctgtgc ggaaaggccc
     2161 acatgggaga agagcaagtc cactggctga cagccaagct gagcttccag ccgacagcct
     2221 gcaccagctg ccagccacga gagtgaagcc attctggata ttccatcatt cttgacacct
     2281 cagccaatac cacgtgaagc agaagaacca gctaggcaat ccagagaata gtaagaaatt
     2341 taaaaattgt tgttttaaac catgagagag agaaagagag aggaaatatc tagaaaaaaa
     2401 aaacttccga tagggcttcc ctggtggcgc agtggtagag agtccgc
//
LOCUS       XM_032608843            2444 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 7 (SLAMF7), transcript
            variant X2, mRNA.
ACCESSION   XM_032608843
VERSION     XM_032608843.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2444
                     /gene="SLAMF7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741781"
     CDS             29..1045
                     /gene="SLAMF7"
                     /codon_start=1
                     /product="SLAM family member 7 isoform X2"
                     /protein_id="XP_032464734.1"
                     /db_xref="GeneID:116741781"
                     /translation="MLSSTACFTFIFLLCQLTGPAASAVLKKLVGALGGSVNFPLNLS
                     VDPIDSIIWVFNTTTLVTIQPKLADKKALIIVTRHRNKERVNFPHEGYSLKLSKLKKN
                     DSGVYRVEIHSSSLQDPLTQEYELRVYEHLSKPKVIIGLQNNKNGTCVTNLTCSMEQG
                     GEDVTYSWKSLGQATNESHSGSTLPISWRQEKRDMTFICMARNPISSNSSNPIFAWKL
                     CEGAAGGLATTVILKLLLSLTLLCFIALVLIILIIRRERRKESIEEKKGLNLHPETLN
                     YSPTFGETSEYDTISYLNSTVPEENAVNTLYSTVQIPPKVEKSHSLSTLPDTPRKFTH
                     ENVN"
     misc_feature    107..415
                     /gene="SLAMF7"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    137..151
                     /gene="SLAMF7"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    176..190
                     /gene="SLAMF7"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    302..316
                     /gene="SLAMF7"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    344..361
                     /gene="SLAMF7"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    389..400
                     /gene="SLAMF7"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ttttagtgac tgacatccaa agagcaatat gctttcttcc acggcatgct tcaccttcat
       61 ctttctcctc tgccagctca cagggccagc agcctctgca gtactgaaga agctagttgg
      121 tgcccttggt gggtctgtga atttcccact gaatctctca gtagatccaa ttgacagcat
      181 tatctgggtc ttcaacacaa ccactctcgt caccatacag ccaaagttgg cagacaaaaa
      241 agcccttatc atagtgaccc gacatcgtaa caaggaaagg gtgaatttcc cacatgaagg
      301 ctactccctg aagctcagca aactgaagaa gaatgactca ggtgtctacc gtgtggagat
      361 acacagctca agcctccagg atcccctaac ccaggagtat gagctgcgtg tctatgagca
      421 cctgtcaaag cccaaagtca tcataggtct gcagaacaat aagaatggca catgtgtaac
      481 caatctgaca tgttccatgg aacagggagg agaggatgta acttacagct ggaagtccct
      541 gggacaggca accaatgagt cccatagtgg ctccaccctc cccatatcct ggaggcagga
      601 gaaaagggat atgaccttca tttgcatggc cagaaacccc atcagcagca actcctcaaa
      661 ccccatcttt gcctggaagc tctgtgaagg tgctgctggt ggcctggcta ccactgtgat
      721 cctcaaactc ctgttgtcac tcaccctgct ctgtttcatt gcactggtgc taattatttt
      781 gatcatacga agagaaagaa gaaaagagtc cattgaagag aagaagggac tgaaccttca
      841 tccagaaact cttaactact cccccacttt tggagagacc tcggagtatg acacaatctc
      901 ttacttaaat agcactgtac cagaggaaaa tgcagtgaat acactttatt ccactgtgca
      961 aataccccca aaggtagaga aatcccactc actgtccacg ttgccagaca caccaaggaa
     1021 atttacccat gagaatgtca actaagcagc catgtgctcc aaagaaaatg gtcaaaagaa
     1081 tccactgact taatcaaaaa catcaaggaa gaatgaagga cactgacttc cttccagaat
     1141 aaagtatccc ttaggttcct acagacttaa gagttcctaa tctgggaatt tcctggtggt
     1201 ccagtggtta ggactctgtg ctttcactgc tgaggtccgg ggttcaatcc ctggttgggg
     1261 aactaaaatc ccacaagcag tgtggtgagg ccaaaaaaaa aaaaaaagag agagagagag
     1321 ttcttaatcc tacccactgc tgagaaatct cttcaaatcc agaatccctc ctggaaatgt
     1381 gattgtgaat ttatcagctg actcaaagca agggcttaga agcatctctg ttgaaatgta
     1441 aatgcggttt cacacatttg aatgacagct cccattccag cgtttggaga tgaggaatat
     1501 accaagggtt tggttgccaa gagggcaaga acttcggagc agccagctga tgttccccgc
     1561 agaagcagaa gacagcagtc agaaatggat ttatttactg actcatcaac gacgtgcctg
     1621 gcactgtgct tactgtgatt ttcgtcagat gtgctctctg ttctcctgaa actgaccctt
     1681 catgaattat ttccgtgggc agtgacatca ggcctgacca ctgattccca acacccaggg
     1741 ggtcaggtgt ggattcacag gacttgggag tcaaagaaca caaggacaga gaagccaggt
     1801 agaagactca gtttggctga gtgaaaactc agaagtgtga ttgaccactg ccccagcttc
     1861 atttacactt ttgtgctgca agggagaaac ccaggcctta ggcctatgca ggagcccatc
     1921 tcagtggtga gctagggaaa gctgagttag aggattgtga ttagtggatg ttaggttcct
     1981 ggacaggtgt ttcccataag tgcaggctga cttaggctta gattcgtgat gtgggctgga
     2041 ccactggggc agctaccatt ttgtgggtcc aaatatatga attattagaa atgaagtgaa
     2101 gaaatgtgtg ttaaagtttg tgaaaggaga aaatatctgc tctgtgcgga aaggcccaca
     2161 tgggagaaga gcaagtccac tggctgacag ccaagctgag cttccagccg acagcctgca
     2221 ccagctgcca gccacgagag tgaagccatt ctggatattc catcattctt gacacctcag
     2281 ccaataccac gtgaagcaga agaaccagct aggcaatcca gagaatagta agaaatttaa
     2341 aaattgttgt tttaaaccat gagagagaga aagagagagg aaatatctag aaaaaaaaaa
     2401 cttccgatag ggcttccctg gtggcgcagt ggtagagagt ccgc
//
LOCUS       XM_032608851            2330 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 7 (SLAMF7), transcript
            variant X3, mRNA.
ACCESSION   XM_032608851
VERSION     XM_032608851.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2330
                     /gene="SLAMF7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741781"
     CDS             29..931
                     /gene="SLAMF7"
                     /codon_start=1
                     /product="SLAM family member 7 isoform X3"
                     /protein_id="XP_032464742.1"
                     /db_xref="GeneID:116741781"
                     /translation="MLSSTACFTFIFLLCQLTGPAASAVLKKLVGALGGSVNFPLNLS
                     VDPIDSIIWVFNTTTLVTIQPKLADKKALIIVTRHRNKERVNFPHEGYSLKLSKLKKN
                     DSGVYRVEIHSSSLQDPLTQEYELRVYEHLSKPKVIIGLQNNKNGTCVTNLTCSMEQG
                     GEDVTYSWKSLGQATNESHSGSTLPISWRQEKRDMTFICMARNPISSNSSNPIFAWKL
                     CEESIEEKKGLNLHPETLNYSPTFGETSEYDTISYLNSTVPEENAVNTLYSTVQIPPK
                     QVEKSHSLSTLPDTPRKFTHENVN"
     misc_feature    107..415
                     /gene="SLAMF7"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    137..151
                     /gene="SLAMF7"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    176..190
                     /gene="SLAMF7"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    302..316
                     /gene="SLAMF7"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    344..361
                     /gene="SLAMF7"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    389..400
                     /gene="SLAMF7"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ttttagtgac tgacatccaa agagcaatat gctttcttcc acggcatgct tcaccttcat
       61 ctttctcctc tgccagctca cagggccagc agcctctgca gtactgaaga agctagttgg
      121 tgcccttggt gggtctgtga atttcccact gaatctctca gtagatccaa ttgacagcat
      181 tatctgggtc ttcaacacaa ccactctcgt caccatacag ccaaagttgg cagacaaaaa
      241 agcccttatc atagtgaccc gacatcgtaa caaggaaagg gtgaatttcc cacatgaagg
      301 ctactccctg aagctcagca aactgaagaa gaatgactca ggtgtctacc gtgtggagat
      361 acacagctca agcctccagg atcccctaac ccaggagtat gagctgcgtg tctatgagca
      421 cctgtcaaag cccaaagtca tcataggtct gcagaacaat aagaatggca catgtgtaac
      481 caatctgaca tgttccatgg aacagggagg agaggatgta acttacagct ggaagtccct
      541 gggacaggca accaatgagt cccatagtgg ctccaccctc cccatatcct ggaggcagga
      601 gaaaagggat atgaccttca tttgcatggc cagaaacccc atcagcagca actcctcaaa
      661 ccccatcttt gcctggaagc tctgtgaaga gtccattgaa gagaagaagg gactgaacct
      721 tcatccagaa actcttaact actcccccac ttttggagag acctcggagt atgacacaat
      781 ctcttactta aatagcactg taccagagga aaatgcagtg aatacacttt attccactgt
      841 gcaaataccc ccaaagcagg tagagaaatc ccactcactg tccacgttgc cagacacacc
      901 aaggaaattt acccatgaga atgtcaacta agcagccatg tgctccaaag aaaatggtca
      961 aaagaatcca ctgacttaat caaaaacatc aaggaagaat gaaggacact gacttccttc
     1021 cagaataaag tatcccttag gttcctacag acttaagagt tcctaatctg ggaatttcct
     1081 ggtggtccag tggttaggac tctgtgcttt cactgctgag gtccggggtt caatccctgg
     1141 ttggggaact aaaatcccac aagcagtgtg gtgaggccaa aaaaaaaaaa aaagagagag
     1201 agagagttct taatcctacc cactgctgag aaatctcttc aaatccagaa tccctcctgg
     1261 aaatgtgatt gtgaatttat cagctgactc aaagcaaggg cttagaagca tctctgttga
     1321 aatgtaaatg cggtttcaca catttgaatg acagctccca ttccagcgtt tggagatgag
     1381 gaatatacca agggtttggt tgccaagagg gcaagaactt cggagcagcc agctgatgtt
     1441 ccccgcagaa gcagaagaca gcagtcagaa atggatttat ttactgactc atcaacgacg
     1501 tgcctggcac tgtgcttact gtgattttcg tcagatgtgc tctctgttct cctgaaactg
     1561 acccttcatg aattatttcc gtgggcagtg acatcaggcc tgaccactga ttcccaacac
     1621 ccagggggtc aggtgtggat tcacaggact tgggagtcaa agaacacaag gacagagaag
     1681 ccaggtagaa gactcagttt ggctgagtga aaactcagaa gtgtgattga ccactgcccc
     1741 agcttcattt acacttttgt gctgcaaggg agaaacccag gccttaggcc tatgcaggag
     1801 cccatctcag tggtgagcta gggaaagctg agttagagga ttgtgattag tggatgttag
     1861 gttcctggac aggtgtttcc cataagtgca ggctgactta ggcttagatt cgtgatgtgg
     1921 gctggaccac tggggcagct accattttgt gggtccaaat atatgaatta ttagaaatga
     1981 agtgaagaaa tgtgtgttaa agtttgtgaa aggagaaaat atctgctctg tgcggaaagg
     2041 cccacatggg agaagagcaa gtccactggc tgacagccaa gctgagcttc cagccgacag
     2101 cctgcaccag ctgccagcca cgagagtgaa gccattctgg atattccatc attcttgaca
     2161 cctcagccaa taccacgtga agcagaagaa ccagctaggc aatccagaga atagtaagaa
     2221 atttaaaaat tgttgtttta aaccatgaga gagagaaaga gagaggaaat atctagaaaa
     2281 aaaaaacttc cgatagggct tccctggtgg cgcagtggta gagagtccgc
//
LOCUS       XM_032608859            2327 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 7 (SLAMF7), transcript
            variant X4, mRNA.
ACCESSION   XM_032608859
VERSION     XM_032608859.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2327
                     /gene="SLAMF7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741781"
     CDS             29..928
                     /gene="SLAMF7"
                     /codon_start=1
                     /product="SLAM family member 7 isoform X4"
                     /protein_id="XP_032464750.1"
                     /db_xref="GeneID:116741781"
                     /translation="MLSSTACFTFIFLLCQLTGPAASAVLKKLVGALGGSVNFPLNLS
                     VDPIDSIIWVFNTTTLVTIQPKLADKKALIIVTRHRNKERVNFPHEGYSLKLSKLKKN
                     DSGVYRVEIHSSSLQDPLTQEYELRVYEHLSKPKVIIGLQNNKNGTCVTNLTCSMEQG
                     GEDVTYSWKSLGQATNESHSGSTLPISWRQEKRDMTFICMARNPISSNSSNPIFAWKL
                     CEESIEEKKGLNLHPETLNYSPTFGETSEYDTISYLNSTVPEENAVNTLYSTVQIPPK
                     VEKSHSLSTLPDTPRKFTHENVN"
     misc_feature    107..415
                     /gene="SLAMF7"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    137..151
                     /gene="SLAMF7"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    176..190
                     /gene="SLAMF7"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    302..316
                     /gene="SLAMF7"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    344..361
                     /gene="SLAMF7"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    389..400
                     /gene="SLAMF7"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ttttagtgac tgacatccaa agagcaatat gctttcttcc acggcatgct tcaccttcat
       61 ctttctcctc tgccagctca cagggccagc agcctctgca gtactgaaga agctagttgg
      121 tgcccttggt gggtctgtga atttcccact gaatctctca gtagatccaa ttgacagcat
      181 tatctgggtc ttcaacacaa ccactctcgt caccatacag ccaaagttgg cagacaaaaa
      241 agcccttatc atagtgaccc gacatcgtaa caaggaaagg gtgaatttcc cacatgaagg
      301 ctactccctg aagctcagca aactgaagaa gaatgactca ggtgtctacc gtgtggagat
      361 acacagctca agcctccagg atcccctaac ccaggagtat gagctgcgtg tctatgagca
      421 cctgtcaaag cccaaagtca tcataggtct gcagaacaat aagaatggca catgtgtaac
      481 caatctgaca tgttccatgg aacagggagg agaggatgta acttacagct ggaagtccct
      541 gggacaggca accaatgagt cccatagtgg ctccaccctc cccatatcct ggaggcagga
      601 gaaaagggat atgaccttca tttgcatggc cagaaacccc atcagcagca actcctcaaa
      661 ccccatcttt gcctggaagc tctgtgaaga gtccattgaa gagaagaagg gactgaacct
      721 tcatccagaa actcttaact actcccccac ttttggagag acctcggagt atgacacaat
      781 ctcttactta aatagcactg taccagagga aaatgcagtg aatacacttt attccactgt
      841 gcaaataccc ccaaaggtag agaaatccca ctcactgtcc acgttgccag acacaccaag
      901 gaaatttacc catgagaatg tcaactaagc agccatgtgc tccaaagaaa atggtcaaaa
      961 gaatccactg acttaatcaa aaacatcaag gaagaatgaa ggacactgac ttccttccag
     1021 aataaagtat cccttaggtt cctacagact taagagttcc taatctggga atttcctggt
     1081 ggtccagtgg ttaggactct gtgctttcac tgctgaggtc cggggttcaa tccctggttg
     1141 gggaactaaa atcccacaag cagtgtggtg aggccaaaaa aaaaaaaaaa gagagagaga
     1201 gagttcttaa tcctacccac tgctgagaaa tctcttcaaa tccagaatcc ctcctggaaa
     1261 tgtgattgtg aatttatcag ctgactcaaa gcaagggctt agaagcatct ctgttgaaat
     1321 gtaaatgcgg tttcacacat ttgaatgaca gctcccattc cagcgtttgg agatgaggaa
     1381 tataccaagg gtttggttgc caagagggca agaacttcgg agcagccagc tgatgttccc
     1441 cgcagaagca gaagacagca gtcagaaatg gatttattta ctgactcatc aacgacgtgc
     1501 ctggcactgt gcttactgtg attttcgtca gatgtgctct ctgttctcct gaaactgacc
     1561 cttcatgaat tatttccgtg ggcagtgaca tcaggcctga ccactgattc ccaacaccca
     1621 gggggtcagg tgtggattca caggacttgg gagtcaaaga acacaaggac agagaagcca
     1681 ggtagaagac tcagtttggc tgagtgaaaa ctcagaagtg tgattgacca ctgccccagc
     1741 ttcatttaca cttttgtgct gcaagggaga aacccaggcc ttaggcctat gcaggagccc
     1801 atctcagtgg tgagctaggg aaagctgagt tagaggattg tgattagtgg atgttaggtt
     1861 cctggacagg tgtttcccat aagtgcaggc tgacttaggc ttagattcgt gatgtgggct
     1921 ggaccactgg ggcagctacc attttgtggg tccaaatata tgaattatta gaaatgaagt
     1981 gaagaaatgt gtgttaaagt ttgtgaaagg agaaaatatc tgctctgtgc ggaaaggccc
     2041 acatgggaga agagcaagtc cactggctga cagccaagct gagcttccag ccgacagcct
     2101 gcaccagctg ccagccacga gagtgaagcc attctggata ttccatcatt cttgacacct
     2161 cagccaatac cacgtgaagc agaagaacca gctaggcaat ccagagaata gtaagaaatt
     2221 taaaaattgt tgttttaaac catgagagag agaaagagag aggaaatatc tagaaaaaaa
     2281 aaacttccga tagggcttcc ctggtggcgc agtggtagag agtccgc
//
LOCUS       XM_032608871            3041 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus signaling lymphocytic activation molecule
            family member 1 (SLAMF1), mRNA.
ACCESSION   XM_032608871
VERSION     XM_032608871.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 7 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-544               VOSU01000011.1     117930350-117930893 c
            545-581             VOSU01000011.1     117930312-117930348 c
            582-610             VOSU01000011.1     117922448-117922476 c
            611-673             VOSU01000011.1     117922384-117922446 c
            674-718             VOSU01000011.1     117922338-117922382 c
            719-719             "N"                1-1
            720-835             VOSU01000011.1     117922222-117922337 c
            836-910             VOSU01000011.1     117922146-117922220 c
            911-926             VOSU01000011.1     117922129-117922144 c
            927-1042            VOSU01000011.1     117920016-117920131 c
            1043-1206           VOSU01000011.1     117919851-117920014 c
            1207-1214           VOSU01000011.1     117919580-117919587 c
            1215-1313           VOSU01000011.1     117911037-117911135 c
            1314-1387           VOSU01000011.1     117906205-117906278 c
            1388-1480           VOSU01000011.1     117901547-117901639 c
            1481-3041           VOSU01000011.1     117898557-117900117 c
FEATURES             Location/Qualifiers
     source          1..3041
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3041
                     /gene="SLAMF1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 6 bases in 6 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 81% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116741795"
     CDS             500..1531
                     /gene="SLAMF1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 6 bases in 6 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: signaling lymphocytic
                     activation molecule"
                     /protein_id="XP_032464762.1"
                     /db_xref="GeneID:116741795"
                     /translation="MDPKGLLSLNVLLFFLSSIAFALSCRTGEGSTNCPSDILGRLGS
                     SVRLPLTSDGISKSMNKSIHILVTMAESPXRHTKKNIVSLDLRKGDSPTTIWRMAMSF
                     IQKNLSLRILKSRKEDEGWYFMSLEENISVQQFCLQLKLYEQVSTPEIKVLNSQQGKN
                     GNCSLIWPAMVEKGDHVAYNWGEEAGAPLLSPTKNSHLLYLTLGPQDANNIYVCTVSN
                     PISNGSQTFIPWSRCRPRSSKSRQWALYAGLFLGVIVGVIMILQVVILLLRRRGKTDN
                     YQPTMEAKSLTIYAQVQKSGSVQKKPDSLPAQDPCTTIYVAATEPVPEPVQESSSITV
                     YASVTLPES"
     misc_feature    500..886
                     /gene="SLAMF1"
                     /note="Signaling lymphocytic activation molecule (SLAM)
                     protein; Region: SLAM; pfam06214"
                     /db_xref="CDD:461853"
ORIGIN      
        1 aaaggtccat cagctcatta aaggtcagtc atccaagttc aactttgaac taacacatcc
       61 aaatttgggg tggcctgaca tgactacatc tttttctttg tataataaga gttaccagac
      121 agaaccgccc agagagtctt aacatccctt tccagaagac agctaagaaa ggggagtggg
      181 gagcacattt ctgcccaaga gctggggttt tgaccacagc cttgggtgag tacacagctc
      241 ccttctcggc ctcttgcagt caaagcacct gatttttgac ttcttgggaa cagcagagtg
      301 acttaagcct gaaaggagat gagcaatcct cgaggcacag gcagaaaagt ccccagtgag
      361 acaggaagcc tactggttcc tgatgcataa actagacagt agaggcagca cttgcctgac
      421 aaagagctca ctctgccgtg gcgtctgcta gcagctgccg ggctccttca ccggctccct
      481 tccctctctc actgggctga tggatcccaa ggggctcctc tccttgaacg tcctgctgtt
      541 ttttctttcc tccatagctt ttgcgctgag ctgcagaaca ggtgagggct caacgaattg
      601 ccccagtgat atccttgggc ggctgggaag cagtgtgcgg ctgcccctga catctgacgg
      661 gataagtaag agcatgaata agagtattca catccttgtc acaatggcag aatcacccng
      721 gagacacacc aagaagaaca tagtgtctct ggatctgcgg aaaggtgact ctccaacgac
      781 catctggaga atggctatga gtttcatcca gaaaaacctg agcctgagga tcctgaaaag
      841 caggaaggag gacgagggct ggtactttat gagcctggag gaaaacattt cagtccagca
      901 attttgcctg cagctgaagc tctatgagca ggtctccact ccggaaatta aggttttgaa
      961 ttcacagcaa gggaagaacg ggaactgtag cctgatctgg cctgcaatgg tggagaaggg
     1021 ggaccatgta gcttacaact ggggtgagga ggcgggcgcc cccctgctga gccccaccaa
     1081 gaactcccac ctcctgtatc tcacccttgg ccctcaggat gccaacaaca tctacgtttg
     1141 caccgtgagc aaccccatca gcaatggctc tcagaccttc atcccgtggt ccagatgcag
     1201 gcctcggtcc tcaaaatcaa gacaatgggc actgtatgct gggctcttct taggggtcat
     1261 cgttggtgtc atcatgattc tgcaagtagt gatactactg ttgagaagaa gaggtaaaac
     1321 agacaattac cagccaacaa tggaagcaaa aagccttact atctatgccc aagtccagaa
     1381 atcaggttct gttcagaaga aacctgactc tctgccagct caggacccct gcaccaccat
     1441 ttacgttgct gccacagagc ctgtgccaga gcctgtccag gaatcaagct ccatcacagt
     1501 atatgccagc gtgacacttc cagagagctg acaccacaga tccagtgaag ggactttctg
     1561 aaggaataca gaggagccaa aataaacact gaacttggtc ccaagtccca agtttcttgt
     1621 gacacctaca catctgtact cttctcggat cgactccctg gtgatgtttc tcccacatct
     1681 acccgcgaaa aagataagga agtgaggctt cccaagcact tagcctgctc tgtgggagac
     1741 aggctcagaa cagagagctg cttggaatag ctttccatct ctgtggtgta gcagatgaaa
     1801 tggataatgc cggtccagtg aggtgtctcg ctctttgctg caattgggta ataaaagcca
     1861 aaggcagaaa gtcaggacag gacatctagt acctatctca gacagctgac caccagccac
     1921 aaagtctgga acagcgtaca cttgggctgc ctgtccttgg tctgggagct gctcccgatc
     1981 accatgcaga cttgatcaag actctgggct tcagtttctc tctctggata gacaatgaga
     2041 ttattgtctc aatgagatta ataaacactc tgagattatt ccataaaaga agctaataaa
     2101 gtattttatt tgtaaaacct ggaagctaag agtcaataaa ctgaaaatat gactttgagg
     2161 tctctgagct ttgaataatg gaatgaaaaa aaatctaaga ttcttaaaag tacagttttg
     2221 tgcaaatgat gttcagattt aaagaaaagt ggtagggctt ccctggtggc gcagtggttg
     2281 ggagtccgcc tgctgatgca ggggacacgg gttcgtgccc cggtccggga agatcccaca
     2341 tgccgcggag cggctgggcc catgagccat ggccgctgag cctgtgcatc cggagcctgt
     2401 gctctgcagt gggagaggcc atagcagtga gaggcccgcg taccgccaaa aagaaaaaaa
     2461 aaaaaagaaa agtggtaagt gtttggtgat actgttacaa aggaatttgg gataatcaga
     2521 acttgtccca gattgacttt tcacttccca aaaatcctag ttctctgctt actctgttga
     2581 acaacaaacc ttgagcctca actaagactc ttcaaactga ttctgagtcc attttacatc
     2641 catggcctca catcctcagg gtctctacca gacacttctt aatccttgca tacctctccc
     2701 catcactaaa tgtatcttga agtagacaat aacatatatt ggcccaacag tttcaagtaa
     2761 ttgaatgctt aataacttaa attattggct gcagacagaa agagcctctt ccattaaagt
     2821 cctatttccc ttctattctc gctttcatat aggccttctt caatttaagc acttctgtct
     2881 gatagggtct tgtgtgaccc tagtgagcac tttaagaaat caccataaag atgtggcaca
     2941 tatacacaat ggaatattac tcagccataa aaagaaacga aattgagcta tttgtaatga
     3001 ggtggataga cctagagtct gtcatacaga gtgaagtaag t
//
LOCUS       XM_032608882            1590 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD48 molecule (CD48), mRNA.
ACCESSION   XM_032608882
VERSION     XM_032608882.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1590
                     /gene="CD48"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741803"
     CDS             141..854
                     /gene="CD48"
                     /codon_start=1
                     /product="CD48 antigen"
                     /protein_id="XP_032464773.1"
                     /db_xref="GeneID:116741803"
                     /translation="MCSRRWELSLALELLLLPHLFLATSMQDYSKYATSGSNVSLSIS
                     SLPRNYKSLTWFYTTDQKIVEWESGQLKYFNTKFKDRVRLDLQSGTLHIHNVQKEDSS
                     TYLLMVLKDHGYEDEWKIPLVVLDPVPKPFIKVKKTQEVNKCYLTLSCVIKDQPVNYT
                     WYAESLPKEFQSSVLEVTHTPQNYSSSYTCQVSNPVSRQNTTVNFTSPCVQAPSSGVA
                     WTATWLVIMVTTVLGLLWI"
     misc_feature    234..515
                     /gene="CD48"
                     /note="N-terminal immunoglobulin (Ig)-like domain of
                     T-cell surface antigen CD2, and similar domains; Region:
                     IgV_CD2_like_N; cd05775"
                     /db_xref="CDD:409431"
     misc_feature    234..242
                     /gene="CD48"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409431"
     misc_feature    249..272
                     /gene="CD48"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409431"
     misc_feature    270..293
                     /gene="CD48"
                     /note="CDR1 [structural motif]; Region: CDR1"
                     /db_xref="CDD:409431"
     misc_feature    294..311
                     /gene="CD48"
                     /note="FR2 [structural motif]; Region: FR2"
                     /db_xref="CDD:409431"
     misc_feature    294..308
                     /gene="CD48"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409431"
     misc_feature    312..359
                     /gene="CD48"
                     /note="CDR2 [structural motif]; Region: CDR2"
                     /db_xref="CDD:409431"
     misc_feature    324..341
                     /gene="CD48"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409431"
     misc_feature    348..359
                     /gene="CD48"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409431"
     misc_feature    381..464
                     /gene="CD48"
                     /note="FR3 [structural motif]; Region: FR3"
                     /db_xref="CDD:409431"
     misc_feature    381..398
                     /gene="CD48"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409431"
     misc_feature    405..419
                     /gene="CD48"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409431"
     misc_feature    447..464
                     /gene="CD48"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409431"
     misc_feature    465..488
                     /gene="CD48"
                     /note="CDR3 [structural motif]; Region: CDR3"
                     /db_xref="CDD:409431"
     misc_feature    489..512
                     /gene="CD48"
                     /note="FR4 [structural motif]; Region: FR4"
                     /db_xref="CDD:409431"
     misc_feature    489..509
                     /gene="CD48"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409431"
ORIGIN      
        1 cccatgagtt gctgaatgga gagaagagct cagtgctatt tttctctaac cttaagacat
       61 aaattcaaga gagccctcag tccctttcta gcttgtttct ggcctgtctc tagagttcct
      121 gggaaattct cgagagtagc atgtgctcca gaaggtggga actgtctctg gctctggaac
      181 tcctactgct gcctcatttg ttcctggcaa ccagcatgca agattattca aaatatgcca
      241 cctccggcag caacgtgagt ctgtcaatct ccagtttgcc gaggaactac aaatcactca
      301 cctggtttta tactactgac cagaagattg tagaatggga atccggtcag cttaaatact
      361 tcaatactaa atttaaggac agggtcaggc ttgatcttca aagtggcaca ttgcacatcc
      421 ataacgtcca gaaggaggac agcagcactt acctcctgat ggtgctgaag gaccatgggt
      481 acgaggacga atggaagatc ccactggtgg tgcttgaccc tgtaccaaaa cctttcataa
      541 aagtcaagaa gacacaggaa gtgaacaagt gttacctgac cttgtcctgt gtgatcaagg
      601 accagcctgt aaactacacc tggtatgcag agtcccttcc aaaagagttc cagagcagtg
      661 tgcttgaagt gacccataca ccacaaaact actccagttc ttatacctgc caagtcagca
      721 atcctgtgag caggcaaaat acgacagtca acttcacttc accctgtgta caggccccat
      781 cctctggagt agcttggact gccacttggc tagtgatcat ggtaaccact gttcttggtc
      841 tcctatggat ctgagataaa ctcttctaac tcaagagtga aacttcaaga atgcaagacc
      901 ttgccctcat cggtaaccat aatattaacc aggacagaag ttctggttat ataggatggg
      961 tgaaagtatt gagatgtcta caaggatttt caaattaact tttttaaacc acggcaattt
     1021 tattttatat cctctagttg ttttttaaca tacatataca catgcattct tcccatcaaa
     1081 aaatgggcaa aatgtattat gcaatgtttt cttgttggaa taaatatttg atatgactgc
     1141 caaagtggat tcctaaagtt gccccaaatt tgtcggacaa tgcctgctcc attagcctag
     1201 acaaactgga acatggagat acaaagggca acacctggga ccactgcctc ctgtgtgcct
     1261 acgtggctgg gaggtaattt gtgctgtctc taactcttgc ttccacatcc ttgccaaacc
     1321 tcctggggtt ccagctctca aactcctccc ccaccaagtt ctggtctcct tctcagtgtt
     1381 ttgcctgttc tagcctctgt gaggaacata cttattaggt ttcctgggaa tgtggggtca
     1441 ggcttactcc cccagaactg agtatgcagc ttattttttt tttttgccct gactttttta
     1501 catctttatt ggagtataat tgctttacca tgttgtgtta gtttctgctg tataacaaag
     1561 tgaaccagct ctacgtatac atatatcccc
//
LOCUS       XR_004346273            5923 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116741818
            (LOC116741818), ncRNA.
ACCESSION   XR_004346273
VERSION     XR_004346273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5923
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5923
                     /gene="LOC116741818"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116741818"
     ncRNA           1..5923
                     /ncRNA_class="lncRNA"
                     /gene="LOC116741818"
                     /product="uncharacterized LOC116741818"
                     /db_xref="GeneID:116741818"
ORIGIN      
        1 ctcagaagcc aggaccccag taactcacaa tgttccttcc tcttaaaaag gcaggaagaa
       61 ctcagagtca gtctctgagg aagaggcagc cgaaaaacac ccaccacccc tgcatcttct
      121 ctccatccgt gggctacagc tgattcctgg cagagaatat agcacagaaa agaaaggagc
      181 tgctcctatt gcctgggaac tggaatggaa agacattttt gggacagacc atccagagcc
      241 acagccaacc tgtagtccct acttatctgt tattcatgac agccctcttc tcttcttgat
      301 tgatttgaca gaaaaatggt aagaagaaca ctgttatcca cacctcatag agctgcagaa
      361 ttaattaatt acctctattg tttttgacaa acacccccag gggaaagact ttcacactgt
      421 gtgattttct agccaggttt aataaagaca ggcttgtaga tggggtcttt caaggaacca
      481 ccagacagat caaataatga cagttctctg ggaatgaggt tttgaaagag ttccaatccc
      541 tttctacccc tccagtggct tccaggctgt tagttttcac catgattgtg gacttttggt
      601 tttaaaggca agagagaggc tagagtggag tgggaacggg gcaagttaaa atgccacaga
      661 gctcgctgtt cttactggga ttcagccatt tttcttgaat aaacattcct tgaattgttg
      721 taagcctttg gttaatttct agaattctga aaaagttgat tctgatcatt ccccaccccc
      781 acccccaccc ccagttttct cattgctttt acagatgaga gaattttcgg aggtccatac
      841 tctgccattt ttgctaacat ctactatttg aggggggtgt gaaattctca ttctattaag
      901 gggattgtca tctactaggt tgattttttt aattgtcata aaatttttac atcttttctt
      961 tgtttattga agtgattgta tgctttttcc cctttaatga gccattgtga ttgcataaat
     1021 agattgttca aagtgaaacc atctttgcat tcctgggata aacctatggt atatcttatt
     1081 gggttaagga attccatttg ttaatatttt atttagaatt tctatccaca agtgagctcg
     1141 gtctataata cagagaaata aaagaagaat aattatcatt tggacaactg aactcagaaa
     1201 agtcagtaac catgacgtga cttccgtgta caagagttgg ctgtaacttt tagttggttc
     1261 ctcttgggaa gaaggtaaat ccatttgagg ctacacatgg caaatcagtt agcgttagga
     1321 ttagatgagt tgaagaaggc tgaaaaagag tgctttaagc aaggtacatg tttattattt
     1381 cctcaactaa actaaaagaa gacaagaggt aggcagttta ttttagtatg gtgattcttt
     1441 ggatatctct agaatatctg ggatagctct aggatatggt ggttctacta tccttatatt
     1501 gtaacgcttg ttctcatggt ccaagatggc tattgaagct ccatccattc atttttgtcc
     1561 caggcagcag gatgaaggaa gaaatgaaaa atactttccc attcactctc agaaatccca
     1621 cacaatttct gcttatatag caatggctaa aacttagcta tgtgtaaagg agttgggaaa
     1681 tgcacccttt agatgaacag aacacatcca actaaacatc agggtttgtt agtttgagaa
     1741 aaaaaaggaa gataaatatt tatttaataa gcaattagga gtctctacca cccagagaat
     1801 ggtttgatca tggaagagag gacatatttg taatcagatg tatgggaaga aggtgaaggc
     1861 gtacgtgctt gcatgaacat ttgctcggca gtcaaggaga atggggagga catctaccaa
     1921 cattacgtgc tcatctcatt ttctctgaga acagtgtcac aatagaattt atccctcaca
     1981 tttattaaaa gttaaatgca agtttcttgg tctgggtgct aattttacag gcatgtttac
     2041 tttgtagaaa tttaccaagc acttttcaga acgtatgtaa tattccaata aggaaagata
     2101 atgagaaata gtgactggga gaaaatactg acttttaaag ttttgtttca gatccttccc
     2161 taattttatc catttgagcc acaacacttt gaacctattt tctctcccct ttgtatagaa
     2221 atatacgatt atttagcata taaatatatt tatattattt tattatcata tataaataca
     2281 taataaaatt tatataagta tatatattta tcaggatcat ttctgaggcc cacacatcta
     2341 cctataaaac cttggtattg cattacatta attatcccat atctagaaaa aattttataa
     2401 aataaaacca aattaatatt cagaattttt caatgaaata tttcaaattt cacaattttc
     2461 taacttgcca aatcaccctg cagaaatttc acatagaaac acttctatca atacctgtaa
     2521 catccttgaa atttcccgta catcagcgag aacaacctat caaagcacaa aactggctgt
     2581 gcaactttcc tgctcaaagc caagcaatgg cttgctaatg tttttaggat aaaattccca
     2641 agaccctgca tgatatggtc cctgttaccc catcagtctt gtctcctgct acactttctc
     2701 tagctttccc agacacactg gtcttctctc attctgaatc tcaggagtgg caagcttctc
     2761 atgaattatg gtttcctgaa ttcagttttg tatctttggt gctcatgcaa ggcaggagga
     2821 ggtgggaatt agagcagtgt ctctataggt gctggtctat ggatctgtcc gatggtacca
     2881 ataactatct ccgactctac ttggaagttc ataagaggat ggggctgatt ctcctccagc
     2941 ctcacctctc cagagccctc acaagagatt ggagagggat cactgggtct tttcagagta
     3001 cctcctgcct ttccggtttt tctcataaaa agaacacccc agcctactat ggatgtatat
     3061 aaatttcttt actgaattgt ccacgggatc tcaaaagccc aaggaacttt agcaaaaaca
     3121 gcggtcataa gaatttccat ataaagcaga atgtcacaaa gtctgcaagc gaagctgatt
     3181 caccttggtg gggaacccta aaaatttgcc cattaaatct tgccacctag atgccagtgt
     3241 ttagcttttc ttttgattct tcaatttact ccaaaaccct tcagtgagat tctctcccac
     3301 cttttttgtt tgggtgtctt gcatacaacc agctgataca cgaggcacag tttctgccct
     3361 ttcagtcctt tctcatcttt tgcaaataca aatgccctgg ctttgccctg acattgcttg
     3421 aaattctcct ttgctcaatc aaagttgatt ttgaagtgga gaaaggtaaa ttctagtcta
     3481 aagggtgagg gagaaaatgg gtccattcca ttctcattga gtcaccttgt cagtgaaatt
     3541 ttgcagctga ttttctcact agtattccta agaaataagc agacatcagt cacattagaa
     3601 aattagattt ttttgagggg gggtgctgtg tggcatatgg aatcttagtt ccctaccagg
     3661 gatcatacct gcgccccctg cactggaagt gtggagtccc aacctctgga ccaccaggga
     3721 agtcccagaa aaataagact tttcttattg atctgaccct gacttttgtg aaattaaagt
     3781 cccagaatta ttgtgctaag gaacatttga ttctttgaga acgggtttat ttttcaagag
     3841 ccactaccca agatagctct ctattttcca cctagaaatg tggcaatagc ttattttaga
     3901 tacttttaaa ttcagacctc tccagcagcc aggttagttt tttcttccag agcatccctg
     3961 cttcatgttc ctttcctctt tcttaaaggc tcctccacac acccgtccct gacctatcta
     4021 atgtctgctc atttttcagc ctctgattcc aaggggaagc tctctctgac cctcaaaacc
     4081 agatccagtc atcctggttt gcatatgctc agctctcaca agctcatctg tctagcagtt
     4141 gtcatatctg acacctgtcg cattgtcata attgaaatta aattaccaat tttcctttgt
     4201 gctgactcta cacttccagt gcagggggca caggtatgat ccctggtggg gaactaagag
     4261 tagaatgtaa tctgcatgaa ggcaagaact gtgtctgtct ttctacatgc tatatctaga
     4321 atggtgtttg aatcatagca gctgctcaat aaatatatat aaccactttt taaaatagtc
     4381 tgaacttggt tgtttggaca ctaatatcaa agaatgtgcc tttcccccca tttacatcag
     4441 gactatgtca agctgccttc tgtcacttaa ggatgttttg ggaaaatacc tgtttcattt
     4501 tcatcacttc tagtaactta acagtacagt tcaatataaa actccccttt aacctcttcc
     4561 tgtcactcca gctcaggctt gcctcatggt ccaaaaagtc tataataggg agggggatat
     4621 ggtttaaact cccccacacc cctcctattt tacctcgccc atttccagct tctcaagtgg
     4681 ttttaggtca gggaggaaag ggccaaactc tttcttagtt acttggcttc ttttggttat
     4741 ctctgtttct ccggataata ctaatccact gtagatgcct tctctgacag atatctgaat
     4801 attggctctt tggtggagca tgggtttgaa tgtcttggca gtggtggggg tgaggagttc
     4861 tccactgaag agtgctgatg tgggagatgt tctctggctt tgcctcttcc tgcccttccc
     4921 cgactcaact cccactgatg atgtaccata caacctcctg cttctgagac ctgccttcct
     4981 agtggccaag gtggcaagac aactgaaacc tggtactgtc tgcagagtcc actgtggaag
     5041 ctcatacatg tcaaggagta agtgtacagg ctgcttcttc atctagctcc aatgttgtgt
     5101 ttctacctca gggaagatca atggacctac tgcccaacta gagagtaaga tgttaatcta
     5161 cacttccttt gcacatctta aatctcacat gtagtacttt cagggccccc ttcatctggc
     5221 attgtggaaa ggggaccaca ctcctgagga ggggaggaga aagtcacagg tctctccaaa
     5281 ctccaacagt cttgatcctg atgattttct cttctctccc tagtcttctg cttatataga
     5341 agggggatga agagtgctgg ggtagcaaag tcagttcagt cacccatgac taaacctaga
     5401 cattgtgcta tccatgattt atttgcagct ctatttagaa tgtgaggtct ctttcttgta
     5461 gctctaaatg agaggcattt ggaaaagtcc tgccaggaac tccattacaa atatctgttg
     5521 atccagcctc cacggagggc agaggggcag gggattgagc tgttaccgat ggacaaggat
     5581 ttaatcagta gtgcctaatg gaagctccat aaaaacccta aataaagggg ttccaagaac
     5641 ttccgggttg gggaacccat ccacaatttg ggagagtggc ggaccctaaa ctccacggtg
     5701 acagaagctc ctggactctg gaccctcccc gacctcgccc tccacctctt tctctggctg
     5761 ttcatccctt tatcataaat ggaaagacct tcaaaacggc tgaagagtaa ggcgtggaga
     5821 tcaccttcgt ccccacaaat acgtcagaaa tacacctgca tgtggagcaa ctcctacaaa
     5881 acacctactg aacactggca gaagacctca gacctcccaa aag
//
LOCUS       XM_032608913            3581 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD84 molecule (CD84), transcript variant
            X1, mRNA.
ACCESSION   XM_032608913
VERSION     XM_032608913.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3581
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3581
                     /gene="CD84"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741822"
     CDS             82..1107
                     /gene="CD84"
                     /codon_start=1
                     /product="SLAM family member 5 isoform X1"
                     /protein_id="XP_032464804.1"
                     /db_xref="GeneID:116741822"
                     /translation="MALHHLWILLLCLQTCLEAAGSDTDIFMVNGILGESVTFPLNIQ
                     QSQEVNSISWNSKTSVAFVTPGNSGAAPTISITHQNYHKRINVSGQNYNLELRNLRLE
                     DSGIYKADINVKTSETITTTTRCYNLQVYRRLGKPKITQSLMTSVNSTCNVTLTCSVE
                     KEEKNVTYSWSPLGEEGNVLRVFQTPDNQELTYTCTAWNPVSNNSDSISAQQLCADIA
                     VGLHTHRTGLLSGLAVFSLLLIILPSVILFLLHKRGQGSYLKIFSKNPDAASKKTIYT
                     YATVPRDTQTAELRIYDEIPQSKVLPTKEEPVNTIYSIVQYSDKMGKTNTQDSKPPGT
                     SSYEIVI"
     misc_feature    160..474
                     /gene="CD84"
                     /note="N-terminal immunoglobulin (Ig)-like domain of the
                     signaling lymphocyte activation molecule (SLAM) family;
                     Region: Ig_SLAM-like_N; cd16842"
                     /db_xref="CDD:409517"
     misc_feature    160..177
                     /gene="CD84"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409517"
     misc_feature    184..204
                     /gene="CD84"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409517"
     misc_feature    order(232..234,238..240,403..405,409..411,415..417)
                     /gene="CD84"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:409517"
     misc_feature    256..273
                     /gene="CD84"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409517"
     misc_feature    295..312
                     /gene="CD84"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409517"
     misc_feature    331..348
                     /gene="CD84"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409517"
     misc_feature    355..372
                     /gene="CD84"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409517"
     misc_feature    394..417
                     /gene="CD84"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409517"
     misc_feature    436..474
                     /gene="CD84"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409517"
     misc_feature    487..708
                     /gene="CD84"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    538..552
                     /gene="CD84"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    583..597
                     /gene="CD84"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    646..657
                     /gene="CD84"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    658..672
                     /gene="CD84"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    697..708
                     /gene="CD84"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 cagcatgaaa acagaagtga aacggattct ccgctggaag agagccatac ttttgcacag
       61 aagtttatac tctggaagaa gatggctctt caccacctat ggatcttgct cctttgtcta
      121 caaacctgtc tggaagcagc tggaagtgac acagacatct tcatggtgaa tgggattctg
      181 ggggagtcag ttactttccc cttaaatatc caacaatcac aggaagttaa cagcatttct
      241 tggaattcca aaacatctgt cgcttttgta acaccaggaa actcaggagc agcacccaca
      301 atttccataa cccaccaaaa ttaccataag cgaataaatg tctcaggtca gaactataac
      361 ctggagctca gaaatctgag gttggaagac tcagggatct acaaagccga cataaatgta
      421 aagacctctg aaacgatcac caccaccacc aggtgctaca atcttcaagt ctatcgtcgg
      481 cttgggaagc caaaaattac tcagagttta atgacatctg tgaatagcac ctgcaatgtc
      541 acactgacat gttctgttga gaaagaagaa aagaatgtga catacagttg gagtccactg
      601 ggggaagaag gcaatgttct tcgagtcttc cagacccctg acaaccaaga gctgacttac
      661 acgtgtacag catggaatcc tgtcagcaac aattctgact ccatctctgc ccagcagctc
      721 tgtgcagaca tcgcagtggg cctccatact caccgcactg ggctgctgag tgggctggct
      781 gtgttctctc tgcttctaat cattctacct tcagtgattt tgttcctttt gcacaaaaga
      841 ggacaaggtt cctacttgaa gatcttcagt aagaaccctg atgctgcctc aaagaaaaca
      901 atatacacat acgccacagt tccaagagac acccagacag cagagctcag gatctatgat
      961 gaaatccccc agtccaaggt gctccccacc aaggaggagc cagtgaacac gatttattcc
     1021 atagtgcagt actctgataa gatggggaaa accaacactc aggacagcaa acctcctggg
     1081 acttcaagct atgaaattgt gatctaggct cccagatgga attctcccca tggaaactga
     1141 gctacaacca tacctactgg cagatgctcc agacctagac ttgctctgcc cagatcttac
     1201 ctggagattg caaatcacca gatcccaaca cgtaagcaaa gaagcaaaca ctttgttgct
     1261 gggcatagct catgcctaga taagcaaatg gatacatgcc ctttctgaaa ttgctccctt
     1321 cctgatgaat gacaaggaag gtcctttgga acagtgcttc ccacccttct tcacatcgca
     1381 gcacatggag aaaatatttt tgtggcccaa tggggtaaac agtaaagatt gctcatggct
     1441 ggaggctgtg tacgaccaga ggtgatgact cttcccagca accccacatg tgaaggatcc
     1501 acattttgca cacctgtaat ctgccatgac acaccactta ggagcctctt ctcacaatat
     1561 atgggaggag ccctggtcca tggcttcccc aagtccacac agcaccttgg ccagatgagc
     1621 ccctcacttg agtacatggc ttggcatgta ctgcatttca gcctctgttt gtccctttgc
     1681 ctgggaaact ttgttcaggg tacacctggc tggaccagtt caaccctatg taactgtgtg
     1741 gcatgggaag ccatcagagt tgtggctctc agctgtgcag acacagtctc ccaatagagt
     1801 gttggaaaat gctctttctg taggaactag cctgctgggg catttttctt caggctccac
     1861 ttcagaaacc tcataatata ttttttctgg ccaagttttc cttctatatc actctgtgat
     1921 tgttaatttt atgtgtcaac ttgattggac catggggtgc ccagatatct ggttaaacat
     1981 tattcaggct gtgagtttga gggaagaggt aaacatttga attggtagac tgagtaaagc
     2041 agattaatct tcccctccag tgtaggtggg catcaccaaa tccattgaaa acctgtatag
     2101 aacaaaaagg cagagtaagg gaaaatccat tctctctctc tgcctgtctt tgaaatggga
     2161 catcagtctt ctcctgcctt aggacttgca catggactgg aatgtccacg atcagctctc
     2221 ctggttctca ggcctttgga ctcagaccgg aactatacca tcacctctcc agcttgctga
     2281 ctacagatct tggaattttt caatctccat aaccacatga gttaattcct ttatagctat
     2341 ttcctgttag atctgtttct ctgcagaacc aggctaatag aaactccaaa cagcttcatc
     2401 aagaagaaga agccagggct tcctggtggc gcagtggttg agagtccacc tgccgatgca
     2461 ggggacacag gttcatgtcc cagtccggga agatcccaca tgccgcggag tggctaggcc
     2521 cgtgagccac ggctgctgag cctgcagcct gtgctctgca acgggagaag ccacaacagt
     2581 gagaggcccg cgtacggcaa aaaaaaaaag aagtagaagc catagccagt aacctcattc
     2641 tctaaaaaga attgctaagt tatatttctg gcactttagg ggaacccaac catcaaaaca
     2701 atagaccttg aaggaagcag tcattctcta gagggaactt tgtagatgac agtataggtg
     2761 atgaaattgg attcacctca gttcctaagg ctcatcccag aaagtcatgg agttcaagct
     2821 gatgttaatg accctccctc tttccctgac aacactaagg aggaatcacc tatggctgag
     2881 cagaacattg aagtaagcat ttgaaaaatt gtttccctta tgtgttagca agcataacca
     2941 gctaaatcct aaaaccccat gaaaaatccc aggctggata gcagaaataa actgcattta
     3001 ggcagaatga acttgttagt ccccactaat gggtccatag aaccacctag ccctgactct
     3061 cattagcact gtgttggggg ttgcaaagcc tccaaagagt aagatgagca tgacgtctgc
     3121 cctggtctaa ctacagtaca agtactacag ttaagttctg aactacatgc tacagagagt
     3181 ggcatgagct agcacagtca gaaaacatct tacggaggaa gtgctgctga agctggacct
     3241 caaaggatgg atggaatttg gcagagaatg aagaagacag aaggcatcca agtgaggaag
     3301 gcatgaaaga aagaaaagga ctggatctgt gtcatgtatt tgggatacct ccccagatat
     3361 accatgcatg ttcacagtct cttgcctgtg tgtggcacag tgctcagctg gaatgtatgc
     3421 ccccatcccc tgtccattta cacagccttc aatacccagc tcaaatgtca cctcatctat
     3481 gaagctttcc cgggtatcac tcggcaaatt aactatggtt ctttttgcac tccttccccc
     3541 acccctttgg tctttctgtc attaaaactc atttcattct a
//
LOCUS       XM_032608921            3518 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD84 molecule (CD84), transcript variant
            X2, mRNA.
ACCESSION   XM_032608921
VERSION     XM_032608921.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3518
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3518
                     /gene="CD84"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741822"
     CDS             82..1044
                     /gene="CD84"
                     /codon_start=1
                     /product="SLAM family member 5 isoform X2"
                     /protein_id="XP_032464812.1"
                     /db_xref="GeneID:116741822"
                     /translation="MALHHLWILLLCLQTCLEAAGSDTDIFMVNGILGESVTFPLNIQ
                     QSQEVNSISWNSKTSVAFVTPGNSGAAPTISITHQNYHKRINVSGQNYNLELRNLRLE
                     DSGIYKADINVKTSETITTTTRCYNLQVYRRLGKPKITQSLMTSVNSTCNVTLTCSVE
                     KEEKNVTYSWSPLGEEGNVLRVFQTPDNQELTYTCTAWNPVSNNSDSISAQQLCADIA
                     VGLHTHRTGLLSGLAVFSLLLIILPSVILFLLHKRGQGSYLKIFSKNPDAASKKTIYT
                     YATVPRDTQTAELRIYDEIPQSKMGKTNTQDSKPPGTSSYEIVI"
     misc_feature    160..474
                     /gene="CD84"
                     /note="N-terminal immunoglobulin (Ig)-like domain of the
                     signaling lymphocyte activation molecule (SLAM) family;
                     Region: Ig_SLAM-like_N; cd16842"
                     /db_xref="CDD:409517"
     misc_feature    160..177
                     /gene="CD84"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409517"
     misc_feature    184..204
                     /gene="CD84"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409517"
     misc_feature    order(232..234,238..240,403..405,409..411,415..417)
                     /gene="CD84"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:409517"
     misc_feature    256..273
                     /gene="CD84"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409517"
     misc_feature    295..312
                     /gene="CD84"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409517"
     misc_feature    331..348
                     /gene="CD84"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409517"
     misc_feature    355..372
                     /gene="CD84"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409517"
     misc_feature    394..417
                     /gene="CD84"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409517"
     misc_feature    436..474
                     /gene="CD84"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409517"
     misc_feature    487..708
                     /gene="CD84"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    538..552
                     /gene="CD84"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    583..597
                     /gene="CD84"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    646..657
                     /gene="CD84"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    658..672
                     /gene="CD84"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    697..708
                     /gene="CD84"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 cagcatgaaa acagaagtga aacggattct ccgctggaag agagccatac ttttgcacag
       61 aagtttatac tctggaagaa gatggctctt caccacctat ggatcttgct cctttgtcta
      121 caaacctgtc tggaagcagc tggaagtgac acagacatct tcatggtgaa tgggattctg
      181 ggggagtcag ttactttccc cttaaatatc caacaatcac aggaagttaa cagcatttct
      241 tggaattcca aaacatctgt cgcttttgta acaccaggaa actcaggagc agcacccaca
      301 atttccataa cccaccaaaa ttaccataag cgaataaatg tctcaggtca gaactataac
      361 ctggagctca gaaatctgag gttggaagac tcagggatct acaaagccga cataaatgta
      421 aagacctctg aaacgatcac caccaccacc aggtgctaca atcttcaagt ctatcgtcgg
      481 cttgggaagc caaaaattac tcagagttta atgacatctg tgaatagcac ctgcaatgtc
      541 acactgacat gttctgttga gaaagaagaa aagaatgtga catacagttg gagtccactg
      601 ggggaagaag gcaatgttct tcgagtcttc cagacccctg acaaccaaga gctgacttac
      661 acgtgtacag catggaatcc tgtcagcaac aattctgact ccatctctgc ccagcagctc
      721 tgtgcagaca tcgcagtggg cctccatact caccgcactg ggctgctgag tgggctggct
      781 gtgttctctc tgcttctaat cattctacct tcagtgattt tgttcctttt gcacaaaaga
      841 ggacaaggtt cctacttgaa gatcttcagt aagaaccctg atgctgcctc aaagaaaaca
      901 atatacacat acgccacagt tccaagagac acccagacag cagagctcag gatctatgat
      961 gaaatccccc agtccaagat ggggaaaacc aacactcagg acagcaaacc tcctgggact
     1021 tcaagctatg aaattgtgat ctaggctccc agatggaatt ctccccatgg aaactgagct
     1081 acaaccatac ctactggcag atgctccaga cctagacttg ctctgcccag atcttacctg
     1141 gagattgcaa atcaccagat cccaacacgt aagcaaagaa gcaaacactt tgttgctggg
     1201 catagctcat gcctagataa gcaaatggat acatgccctt tctgaaattg ctcccttcct
     1261 gatgaatgac aaggaaggtc ctttggaaca gtgcttccca cccttcttca catcgcagca
     1321 catggagaaa atatttttgt ggcccaatgg ggtaaacagt aaagattgct catggctgga
     1381 ggctgtgtac gaccagaggt gatgactctt cccagcaacc ccacatgtga aggatccaca
     1441 ttttgcacac ctgtaatctg ccatgacaca ccacttagga gcctcttctc acaatatatg
     1501 ggaggagccc tggtccatgg cttccccaag tccacacagc accttggcca gatgagcccc
     1561 tcacttgagt acatggcttg gcatgtactg catttcagcc tctgtttgtc cctttgcctg
     1621 ggaaactttg ttcagggtac acctggctgg accagttcaa ccctatgtaa ctgtgtggca
     1681 tgggaagcca tcagagttgt ggctctcagc tgtgcagaca cagtctccca atagagtgtt
     1741 ggaaaatgct ctttctgtag gaactagcct gctggggcat ttttcttcag gctccacttc
     1801 agaaacctca taatatattt tttctggcca agttttcctt ctatatcact ctgtgattgt
     1861 taattttatg tgtcaacttg attggaccat ggggtgccca gatatctggt taaacattat
     1921 tcaggctgtg agtttgaggg aagaggtaaa catttgaatt ggtagactga gtaaagcaga
     1981 ttaatcttcc cctccagtgt aggtgggcat caccaaatcc attgaaaacc tgtatagaac
     2041 aaaaaggcag agtaagggaa aatccattct ctctctctgc ctgtctttga aatgggacat
     2101 cagtcttctc ctgccttagg acttgcacat ggactggaat gtccacgatc agctctcctg
     2161 gttctcaggc ctttggactc agaccggaac tataccatca cctctccagc ttgctgacta
     2221 cagatcttgg aatttttcaa tctccataac cacatgagtt aattccttta tagctatttc
     2281 ctgttagatc tgtttctctg cagaaccagg ctaatagaaa ctccaaacag cttcatcaag
     2341 aagaagaagc cagggcttcc tggtggcgca gtggttgaga gtccacctgc cgatgcaggg
     2401 gacacaggtt catgtcccag tccgggaaga tcccacatgc cgcggagtgg ctaggcccgt
     2461 gagccacggc tgctgagcct gcagcctgtg ctctgcaacg ggagaagcca caacagtgag
     2521 aggcccgcgt acggcaaaaa aaaaaagaag tagaagccat agccagtaac ctcattctct
     2581 aaaaagaatt gctaagttat atttctggca ctttagggga acccaaccat caaaacaata
     2641 gaccttgaag gaagcagtca ttctctagag ggaactttgt agatgacagt ataggtgatg
     2701 aaattggatt cacctcagtt cctaaggctc atcccagaaa gtcatggagt tcaagctgat
     2761 gttaatgacc ctccctcttt ccctgacaac actaaggagg aatcacctat ggctgagcag
     2821 aacattgaag taagcatttg aaaaattgtt tcccttatgt gttagcaagc ataaccagct
     2881 aaatcctaaa accccatgaa aaatcccagg ctggatagca gaaataaact gcatttaggc
     2941 agaatgaact tgttagtccc cactaatggg tccatagaac cacctagccc tgactctcat
     3001 tagcactgtg ttgggggttg caaagcctcc aaagagtaag atgagcatga cgtctgccct
     3061 ggtctaacta cagtacaagt actacagtta agttctgaac tacatgctac agagagtggc
     3121 atgagctagc acagtcagaa aacatcttac ggaggaagtg ctgctgaagc tggacctcaa
     3181 aggatggatg gaatttggca gagaatgaag aagacagaag gcatccaagt gaggaaggca
     3241 tgaaagaaag aaaaggactg gatctgtgtc atgtatttgg gatacctccc cagatatacc
     3301 atgcatgttc acagtctctt gcctgtgtgt ggcacagtgc tcagctggaa tgtatgcccc
     3361 catcccctgt ccatttacac agccttcaat acccagctca aatgtcacct catctatgaa
     3421 gctttcccgg gtatcactcg gcaaattaac tatggttctt tttgcactcc ttcccccacc
     3481 cctttggtct ttctgtcatt aaaactcatt tcattcta
//
LOCUS       XM_032608927            3638 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD84 molecule (CD84), transcript variant
            X3, mRNA.
ACCESSION   XM_032608927
VERSION     XM_032608927.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3638
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3638
                     /gene="CD84"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741822"
     CDS             220..1164
                     /gene="CD84"
                     /codon_start=1
                     /product="SLAM family member 5 isoform X3"
                     /protein_id="XP_032464818.1"
                     /db_xref="GeneID:116741822"
                     /translation="MVNGILGESVTFPLNIQQSQEVNSISWNSKTSVAFVTPGNSGAA
                     PTISITHQNYHKRINVSGQNYNLELRNLRLEDSGIYKADINVKTSETITTTTRCYNLQ
                     VYRRLGKPKITQSLMTSVNSTCNVTLTCSVEKEEKNVTYSWSPLGEEGNVLRVFQTPD
                     NQELTYTCTAWNPVSNNSDSISAQQLCADIAVGLHTHRTGLLSGLAVFSLLLIILPSV
                     ILFLLHKRGQGSYLKIFSKNPDAASKKTIYTYATVPRDTQTAELRIYDEIPQSKVLPT
                     KEEPVNTIYSIVQYSDKMGKTNTQDSKPPGTSSYEIVI"
     misc_feature    220..531
                     /gene="CD84"
                     /note="N-terminal immunoglobulin (Ig)-like domain of the
                     signaling lymphocyte activation molecule (SLAM) family;
                     Region: Ig_SLAM-like_N; cd16842"
                     /db_xref="CDD:409517"
     misc_feature    220..234
                     /gene="CD84"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409517"
     misc_feature    241..261
                     /gene="CD84"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409517"
     misc_feature    order(289..291,295..297,460..462,466..468,472..474)
                     /gene="CD84"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:409517"
     misc_feature    313..330
                     /gene="CD84"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409517"
     misc_feature    352..369
                     /gene="CD84"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409517"
     misc_feature    388..405
                     /gene="CD84"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409517"
     misc_feature    412..429
                     /gene="CD84"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409517"
     misc_feature    451..474
                     /gene="CD84"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409517"
     misc_feature    493..531
                     /gene="CD84"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409517"
     misc_feature    544..765
                     /gene="CD84"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    595..609
                     /gene="CD84"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    640..654
                     /gene="CD84"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    703..714
                     /gene="CD84"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    715..729
                     /gene="CD84"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    754..765
                     /gene="CD84"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 caggagccca aaagtcagtg ctaggccact tgggttactc aagtattttc taaatcaaac
       61 ctttcttctc ttgaacctaa gagaaggatg aatctgtaag tttgggggta tctaaactca
      121 tctacgtgga agttggaaaa gaaagaggtg tgaacaatca attggggagc tgatgttagt
      181 agaggtctgg aagcagctgg aagtgacaca gacatcttca tggtgaatgg gattctgggg
      241 gagtcagtta ctttcccctt aaatatccaa caatcacagg aagttaacag catttcttgg
      301 aattccaaaa catctgtcgc ttttgtaaca ccaggaaact caggagcagc acccacaatt
      361 tccataaccc accaaaatta ccataagcga ataaatgtct caggtcagaa ctataacctg
      421 gagctcagaa atctgaggtt ggaagactca gggatctaca aagccgacat aaatgtaaag
      481 acctctgaaa cgatcaccac caccaccagg tgctacaatc ttcaagtcta tcgtcggctt
      541 gggaagccaa aaattactca gagtttaatg acatctgtga atagcacctg caatgtcaca
      601 ctgacatgtt ctgttgagaa agaagaaaag aatgtgacat acagttggag tccactgggg
      661 gaagaaggca atgttcttcg agtcttccag acccctgaca accaagagct gacttacacg
      721 tgtacagcat ggaatcctgt cagcaacaat tctgactcca tctctgccca gcagctctgt
      781 gcagacatcg cagtgggcct ccatactcac cgcactgggc tgctgagtgg gctggctgtg
      841 ttctctctgc ttctaatcat tctaccttca gtgattttgt tccttttgca caaaagagga
      901 caaggttcct acttgaagat cttcagtaag aaccctgatg ctgcctcaaa gaaaacaata
      961 tacacatacg ccacagttcc aagagacacc cagacagcag agctcaggat ctatgatgaa
     1021 atcccccagt ccaaggtgct ccccaccaag gaggagccag tgaacacgat ttattccata
     1081 gtgcagtact ctgataagat ggggaaaacc aacactcagg acagcaaacc tcctgggact
     1141 tcaagctatg aaattgtgat ctaggctccc agatggaatt ctccccatgg aaactgagct
     1201 acaaccatac ctactggcag atgctccaga cctagacttg ctctgcccag atcttacctg
     1261 gagattgcaa atcaccagat cccaacacgt aagcaaagaa gcaaacactt tgttgctggg
     1321 catagctcat gcctagataa gcaaatggat acatgccctt tctgaaattg ctcccttcct
     1381 gatgaatgac aaggaaggtc ctttggaaca gtgcttccca cccttcttca catcgcagca
     1441 catggagaaa atatttttgt ggcccaatgg ggtaaacagt aaagattgct catggctgga
     1501 ggctgtgtac gaccagaggt gatgactctt cccagcaacc ccacatgtga aggatccaca
     1561 ttttgcacac ctgtaatctg ccatgacaca ccacttagga gcctcttctc acaatatatg
     1621 ggaggagccc tggtccatgg cttccccaag tccacacagc accttggcca gatgagcccc
     1681 tcacttgagt acatggcttg gcatgtactg catttcagcc tctgtttgtc cctttgcctg
     1741 ggaaactttg ttcagggtac acctggctgg accagttcaa ccctatgtaa ctgtgtggca
     1801 tgggaagcca tcagagttgt ggctctcagc tgtgcagaca cagtctccca atagagtgtt
     1861 ggaaaatgct ctttctgtag gaactagcct gctggggcat ttttcttcag gctccacttc
     1921 agaaacctca taatatattt tttctggcca agttttcctt ctatatcact ctgtgattgt
     1981 taattttatg tgtcaacttg attggaccat ggggtgccca gatatctggt taaacattat
     2041 tcaggctgtg agtttgaggg aagaggtaaa catttgaatt ggtagactga gtaaagcaga
     2101 ttaatcttcc cctccagtgt aggtgggcat caccaaatcc attgaaaacc tgtatagaac
     2161 aaaaaggcag agtaagggaa aatccattct ctctctctgc ctgtctttga aatgggacat
     2221 cagtcttctc ctgccttagg acttgcacat ggactggaat gtccacgatc agctctcctg
     2281 gttctcaggc ctttggactc agaccggaac tataccatca cctctccagc ttgctgacta
     2341 cagatcttgg aatttttcaa tctccataac cacatgagtt aattccttta tagctatttc
     2401 ctgttagatc tgtttctctg cagaaccagg ctaatagaaa ctccaaacag cttcatcaag
     2461 aagaagaagc cagggcttcc tggtggcgca gtggttgaga gtccacctgc cgatgcaggg
     2521 gacacaggtt catgtcccag tccgggaaga tcccacatgc cgcggagtgg ctaggcccgt
     2581 gagccacggc tgctgagcct gcagcctgtg ctctgcaacg ggagaagcca caacagtgag
     2641 aggcccgcgt acggcaaaaa aaaaaagaag tagaagccat agccagtaac ctcattctct
     2701 aaaaagaatt gctaagttat atttctggca ctttagggga acccaaccat caaaacaata
     2761 gaccttgaag gaagcagtca ttctctagag ggaactttgt agatgacagt ataggtgatg
     2821 aaattggatt cacctcagtt cctaaggctc atcccagaaa gtcatggagt tcaagctgat
     2881 gttaatgacc ctccctcttt ccctgacaac actaaggagg aatcacctat ggctgagcag
     2941 aacattgaag taagcatttg aaaaattgtt tcccttatgt gttagcaagc ataaccagct
     3001 aaatcctaaa accccatgaa aaatcccagg ctggatagca gaaataaact gcatttaggc
     3061 agaatgaact tgttagtccc cactaatggg tccatagaac cacctagccc tgactctcat
     3121 tagcactgtg ttgggggttg caaagcctcc aaagagtaag atgagcatga cgtctgccct
     3181 ggtctaacta cagtacaagt actacagtta agttctgaac tacatgctac agagagtggc
     3241 atgagctagc acagtcagaa aacatcttac ggaggaagtg ctgctgaagc tggacctcaa
     3301 aggatggatg gaatttggca gagaatgaag aagacagaag gcatccaagt gaggaaggca
     3361 tgaaagaaag aaaaggactg gatctgtgtc atgtatttgg gatacctccc cagatatacc
     3421 atgcatgttc acagtctctt gcctgtgtgt ggcacagtgc tcagctggaa tgtatgcccc
     3481 catcccctgt ccatttacac agccttcaat acccagctca aatgtcacct catctatgaa
     3541 gctttcccgg gtatcactcg gcaaattaac tatggttctt tttgcactcc ttcccccacc
     3601 cctttggtct ttctgtcatt aaaactcatt tcattcta
//
LOCUS       XR_004346289             463 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116741838
            (LOC116741838), ncRNA.
ACCESSION   XR_004346289
VERSION     XR_004346289.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..463
                     /gene="LOC116741838"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116741838"
     ncRNA           1..463
                     /ncRNA_class="lncRNA"
                     /gene="LOC116741838"
                     /product="uncharacterized LOC116741838"
                     /db_xref="GeneID:116741838"
ORIGIN      
        1 gctgacttgt gtgcatgcaa gaaactggcc gcctttgggc tgccagagag ggaccaggga
       61 gttactttct acatctctag agtggtgtct gtgtcactct agagcttcag gacacgccta
      121 ttcaattggg aagttcccct gccgccctgg tccacctgga ctctgtttgg aaagcaagta
      181 gagagccgtt ctgggacaga ctcagtggtg aaaagtgcaa gtgctacatg agagtcattt
      241 aaatgaatgc atttggaatc atggatttct aagtactacc tctcaaatcc tactggttaa
      301 ttctttttgt tgaactatga aggacatcat atctggtcca gatccctgtt acctcttcat
      361 gtgtctattc atcctgggca gcctggctca tgaaccacgc aagcagattc ttcacaaagc
      421 aaaccttgag acaaaggcca tattgggaat gggccctgac agg
//
LOCUS       XR_004346292            3411 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X1, misc_RNA.
ACCESSION   XR_004346292
VERSION     XR_004346292.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3411
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     misc_RNA        1..3411
                     /gene="RAP1GAP"
                     /product="RAP1 GTPase activating protein, transcript
                     variant X1"
                     /db_xref="GeneID:116741844"
ORIGIN      
        1 ggtggcgcgg gcggtggcag caccatgagc ggccggaagc gcagcttcac cttcggggcc
       61 tacggagggg tggacaagtc cttcacccct caccggagtg cgtggaggag tgatgggcag
      121 aacctgcgct tccctcaggc actagacctg ccacgagtgg acttagctcc ctcccagact
      181 gcttcactcc accctaagaa cacagatctg tttgagatga ttgaaaagat gcagggaagc
      241 aggatggatg aacagcgatg ctccttccca ccacccctca aaacggagga ggactacatt
      301 ccctacccga gcgtccacga ggtcctgggg cgagaagggc ccttccccct tatcctgctg
      361 ccccagtttg ggggctactg gattgaaggc accaatcacg aaatcaccag catcccggag
      421 acagagccgc tgcagtcacc cacggccaag gtgaagctgg aatgcaaccc caccgcccgc
      481 atctaccgca agcactttct tggcaaggag cattttaatt actactcact ggacaccgcc
      541 ctgggccacc ttgtcttctc actcaagtat gatgtcatcg gggaccagga acacctgcgt
      601 ctgctgctca ggaccaagtg ccggacatac catgacgtca tccccatctc ctgcctcact
      661 gagttcccca acgtggtcca gatggcaaag ctggtgtgtg aagacgtgaa tgtggatcga
      721 ttctatcctg tgctctaccc caaggcctcc cgcctcatcg tcaccttcga cgagcatgtc
      781 atcagcaata acttcaagtt cggagtcatt tatcagaagc ttgggcagac ctccgaggaa
      841 gaactcttca gcaccaacga ggagagccct gccttcgtgg agttcctcga attccttggc
      901 cagaaggtca aactgcagga ctttaagggg ttccgaggag gcctggacgt gacccacggg
      961 cagacgggaa ccgagtctgt gtactgcaac ttccgcaaca aggagatcat gtttcacgtg
     1021 tccaccaagc tgccctacac agaaggggac gcccagcagt tacagcggaa gcgtcacatc
     1081 gggaacgaca tcgtggctgt ggtcttccag gacgagaaca cgccctttgt gccggacatg
     1141 attgcgtcca actttctgca tgcctatgtg gtggtgcagg ccgagagtgg gggccccgat
     1201 ggccccctgt acaaggtctc cgtcactgcg agagacgacg tgcccttctt cgggccaccc
     1261 ctcccggacc ctgctgtgtt caggaagggg cccgagttcc aggaattttt gctgacaaaa
     1321 ctgatcaatg ctgaatatgc ttgctacaag gcagagaagt ttgccaaact ggaggagcgg
     1381 acacgggccg ccctcctgga gacgctctat gaggagctgc acatccacag ccagtccatg
     1441 atgggcctgg gtggagacga ggacaagatg gagaacggcg gcgggggcgg cggcttcttc
     1501 gaatccttca agcgggtcat ccggagccgc agccagtcca tggatgccat ggggctgagc
     1561 aacaagaagc ccaacaccgt gtccaccagc cacagcggga gctttgcgcc caacaacccg
     1621 gacctggcca aggcggctgg aatatcattg cttattcctg ggaaaagtgc gagtagattc
     1681 ggacgccggg gcagtgccat aggcatagga accgtggaag agtccctgat tgtccctgga
     1741 aagagcccca ccaggaagaa gtcgggcccg ttcggctcac gccgcagcag tgccatcggc
     1801 attgagaaca tacaggaggt gcaggagaaa aggcctggtg ctgaatcccc ccgctgcccc
     1861 catgtgcccc gcagggagag ccccccggct ggccagaaga ccccagacag cgggcacgtc
     1921 tcacaggagc ccaagtcgga gaactcatcc actcagagct ccccagagat gcccacgacc
     1981 aaaaacagag cggagacagc agctcagaga gcagaagtgc tgaaggactt ctcccgctcc
     2041 tcgtccagtg ccagcagctt cgccagcgtc gtggaggaaa cagagggtgt ggacggggac
     2101 gatacaggcc tggagagtgt ctcatcctcg gggacgcccc acaagcggga ctccttcatc
     2161 tatagcacgt ggctggagga cagtgtcagc accacaagtg ggggcagctc cccagtgagg
     2221 tggctccctc ctgcctccct ccccaggccc ctctcggtca ccctacccag acgccggcaa
     2281 gtcgggggac cctgcatgtc ccgagatcaa gatccagctg gaagcatctg aacagcacac
     2341 gccccagctg ggctgttagc caggatggcc ctctgaaggt gacactgagc agaagcacga
     2401 ggggaagatg ctgtgtcaaa tccaggcaga cgggacctct gcccccgagg ccagcaccag
     2461 cctgtgggct gcccccggcc tccccagccc tcctcctggc ccactgtctg ggctgtctct
     2521 gcagggcgga gccatccaga cctgggagcg gggaagctgc tggcactatc cccaccccct
     2581 gggctggggg gccggctggg gcagggagtg gtcacttgaa acaggactcc aggcctggcc
     2641 atccatcacc cctgggtggc cctctggact cagggggagt gagctggaag gggggattga
     2701 gacatctcag tgcatacaga gcctactgtg gaagccgtgg ggtgtgaggt gtggtagaat
     2761 gagcactgga ctgggagtcc taagtcctag cttttaattt gggttctgct ctgtgactat
     2821 gggcaaatca ctctccctct ctgggcgcct ctgctataaa tggacaagat tatttcagag
     2881 gtcactgaag gctgtgagtc catgcacctg ccccagaatg gaggattgtc gtcctagaga
     2941 cctcccatca ccctaccctg cttcttgggg ttcctggggc ccccggtggg ccgaggctgt
     3001 gcccattgcc cctcctggac cctcagtctc taccgcagat ctgccgatgc cctgtccact
     3061 gcctccacga cagacgagtg acccgcttgt gggggaagtg ggagctgcct ggctcctcag
     3121 ccagcaccca gcttaacccc tgccttccca tgctcctggg cacgccgggc cgaggggtct
     3181 cagctggcct agagttatgg gccgcacctt tgcgccaccc tcacccacca cggagggggc
     3241 agccaggcac agctgctgtg agtccacatc cttgtgtgcg tctgtccaca ctttttaggc
     3301 gccacgccaa aggccagcct cctggcccca acacccattt tggaagcccc ccatggccgt
     3361 gtgtatgtca gtaacagttg tacaaaataa attctattta tcgctattgt a
//
LOCUS       XM_032608949            3380 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X2, mRNA.
ACCESSION   XM_032608949
VERSION     XM_032608949.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3380
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     CDS             25..2328
                     /gene="RAP1GAP"
                     /codon_start=1
                     /product="rap1 GTPase-activating protein 1 isoform X1"
                     /protein_id="XP_032464840.1"
                     /db_xref="GeneID:116741844"
                     /translation="MSGRKRSFTFGAYGGVDKSFTPHRSAWRSDGQNLRFPQALDLPR
                     VDLAPSQTASLHPKNTDLFEMIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLG
                     REGPFPLILLPQFGGYWIEGTNHEITSIPETEPLQSPTAKVKLECNPTARIYRKHFLG
                     KEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFPNVV
                     QMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEELFS
                     TNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVST
                     KLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAESGGPD
                     GPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLE
                     ERTRAALLETLYEELHIHSQSMMGLGGDEDKMENGGGGGGFFESFKRVIRSRSQSMDA
                     MGLSNKKPNTVSTSHSGSFAPNNPDLAKAAGISLLIPGKSASRFGRRGSAIGIGTVEE
                     SLIVPGKSPTRKKSGPFGSRRSSAIGIENIQEVQEKRPGAESPRCPHVPRRESPPAGQ
                     KTPDSGHVSQEPKSENSSTQSSPEMPTTKNRAETAAQRAEVLKDFSRSSSSASSFASV
                     VEETEGVDGDDTGLESVSSSGTPHKRDSFIYSTWLEDSVSTTSGGSSPGPSRSPYPDA
                     GKSGDPACPEIKIQLEASEQHTPQLGC"
     misc_feature    205..267
                     /gene="RAP1GAP"
                     /note="LGN motif, putative GEFs specific for G-alpha
                     GTPases; Region: GoLoco; smart00390"
                     /db_xref="CDD:214645"
     misc_feature    847..1386
                     /gene="RAP1GAP"
                     /note="Rap/ran-GAP; Region: Rap_GAP; pfam02145"
                     /db_xref="CDD:460463"
     misc_feature    <1582..>2025
                     /gene="RAP1GAP"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
ORIGIN      
        1 ggtggcgcgg gcggtggcag caccatgagc ggccggaagc gcagcttcac cttcggggcc
       61 tacggagggg tggacaagtc cttcacccct caccggagtg cgtggaggag tgatgggcag
      121 aacctgcgct tccctcaggc actagacctg ccacgagtgg acttagctcc ctcccagact
      181 gcttcactcc accctaagaa cacagatctg tttgagatga ttgaaaagat gcagggaagc
      241 aggatggatg aacagcgatg ctccttccca ccacccctca aaacggagga ggactacatt
      301 ccctacccga gcgtccacga ggtcctgggg cgagaagggc ccttccccct tatcctgctg
      361 ccccagtttg ggggctactg gattgaaggc accaatcacg aaatcaccag catcccggag
      421 acagagccgc tgcagtcacc cacggccaag gtgaagctgg aatgcaaccc caccgcccgc
      481 atctaccgca agcactttct tggcaaggag cattttaatt actactcact ggacaccgcc
      541 ctgggccacc ttgtcttctc actcaagtat gatgtcatcg gggaccagga acacctgcgt
      601 ctgctgctca ggaccaagtg ccggacatac catgacgtca tccccatctc ctgcctcact
      661 gagttcccca acgtggtcca gatggcaaag ctggtgtgtg aagacgtgaa tgtggatcga
      721 ttctatcctg tgctctaccc caaggcctcc cgcctcatcg tcaccttcga cgagcatgtc
      781 atcagcaata acttcaagtt cggagtcatt tatcagaagc ttgggcagac ctccgaggaa
      841 gaactcttca gcaccaacga ggagagccct gccttcgtgg agttcctcga attccttggc
      901 cagaaggtca aactgcagga ctttaagggg ttccgaggag gcctggacgt gacccacggg
      961 cagacgggaa ccgagtctgt gtactgcaac ttccgcaaca aggagatcat gtttcacgtg
     1021 tccaccaagc tgccctacac agaaggggac gcccagcagt tacagcggaa gcgtcacatc
     1081 gggaacgaca tcgtggctgt ggtcttccag gacgagaaca cgccctttgt gccggacatg
     1141 attgcgtcca actttctgca tgcctatgtg gtggtgcagg ccgagagtgg gggccccgat
     1201 ggccccctgt acaaggtctc cgtcactgcg agagacgacg tgcccttctt cgggccaccc
     1261 ctcccggacc ctgctgtgtt caggaagggg cccgagttcc aggaattttt gctgacaaaa
     1321 ctgatcaatg ctgaatatgc ttgctacaag gcagagaagt ttgccaaact ggaggagcgg
     1381 acacgggccg ccctcctgga gacgctctat gaggagctgc acatccacag ccagtccatg
     1441 atgggcctgg gtggagacga ggacaagatg gagaacggcg gcgggggcgg cggcttcttc
     1501 gaatccttca agcgggtcat ccggagccgc agccagtcca tggatgccat ggggctgagc
     1561 aacaagaagc ccaacaccgt gtccaccagc cacagcggga gctttgcgcc caacaacccg
     1621 gacctggcca aggcggctgg aatatcattg cttattcctg ggaaaagtgc gagtagattc
     1681 ggacgccggg gcagtgccat aggcatagga accgtggaag agtccctgat tgtccctgga
     1741 aagagcccca ccaggaagaa gtcgggcccg ttcggctcac gccgcagcag tgccatcggc
     1801 attgagaaca tacaggaggt gcaggagaaa aggcctggtg ctgaatcccc ccgctgcccc
     1861 catgtgcccc gcagggagag ccccccggct ggccagaaga ccccagacag cgggcacgtc
     1921 tcacaggagc ccaagtcgga gaactcatcc actcagagct ccccagagat gcccacgacc
     1981 aaaaacagag cggagacagc agctcagaga gcagaagtgc tgaaggactt ctcccgctcc
     2041 tcgtccagtg ccagcagctt cgccagcgtc gtggaggaaa cagagggtgt ggacggggac
     2101 gatacaggcc tggagagtgt ctcatcctcg gggacgcccc acaagcggga ctccttcatc
     2161 tatagcacgt ggctggagga cagtgtcagc accacaagtg ggggcagctc cccaggcccc
     2221 tctcggtcac cctacccaga cgccggcaag tcgggggacc ctgcatgtcc cgagatcaag
     2281 atccagctgg aagcatctga acagcacacg ccccagctgg gctgttagcc aggatggccc
     2341 tctgaaggtg acactgagca gaagcacgag gggaagatgc tgtgtcaaat ccaggcagac
     2401 gggacctctg cccccgaggc cagcaccagc ctgtgggctg cccccggcct ccccagccct
     2461 cctcctggcc cactgtctgg gctgtctctg cagggcggag ccatccagac ctgggagcgg
     2521 ggaagctgct ggcactatcc ccaccccctg ggctgggggg ccggctgggg cagggagtgg
     2581 tcacttgaaa caggactcca ggcctggcca tccatcaccc ctgggtggcc ctctggactc
     2641 agggggagtg agctggaagg ggggattgag acatctcagt gcatacagag cctactgtgg
     2701 aagccgtggg gtgtgaggtg tggtagaatg agcactggac tgggagtcct aagtcctagc
     2761 ttttaatttg ggttctgctc tgtgactatg ggcaaatcac tctccctctc tgggcgcctc
     2821 tgctataaat ggacaagatt atttcagagg tcactgaagg ctgtgagtcc atgcacctgc
     2881 cccagaatgg aggattgtcg tcctagagac ctcccatcac cctaccctgc ttcttggggt
     2941 tcctggggcc cccggtgggc cgaggctgtg cccattgccc ctcctggacc ctcagtctct
     3001 accgcagatc tgccgatgcc ctgtccactg cctccacgac agacgagtga cccgcttgtg
     3061 ggggaagtgg gagctgcctg gctcctcagc cagcacccag cttaacccct gccttcccat
     3121 gctcctgggc acgccgggcc gaggggtctc agctggccta gagttatggg ccgcaccttt
     3181 gcgccaccct cacccaccac ggagggggca gccaggcaca gctgctgtga gtccacatcc
     3241 ttgtgtgcgt ctgtccacac tttttaggcg ccacgccaaa ggccagcctc ctggccccaa
     3301 cacccatttt ggaagccccc catggccgtg tgtatgtcag taacagttgt acaaaataaa
     3361 ttctatttat cgctattgta
//
LOCUS       XR_004346293            3369 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004346293
VERSION     XR_004346293.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3369
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     misc_RNA        1..3369
                     /gene="RAP1GAP"
                     /product="RAP1 GTPase activating protein, transcript
                     variant X3"
                     /db_xref="GeneID:116741844"
ORIGIN      
        1 ggtggcgcgg gcggtggcag caccatgagc ggccggaagc gcagcttcac cttcggggcc
       61 tacggagggg tggacaagtc cttcacccct caccggagtg cgtggaggag tgatgggcag
      121 aacctgcgct tccctcaggc actagacctg ccacgagtgg acttagctcc ctcccagact
      181 gcttcactcc accctaagaa cacagatctg tttgagatga ttgaaaagat gcagggaagc
      241 aggatggatg aacagcgatg ctccttccca ccacccctca aaacggagga ggactacatt
      301 ccctacccga gcgtccacga ggtcctgggg cgagaagggc ccttccccct tatcctgctg
      361 ccccagtttg ggggctactg gattgaaggc accaatcacg aaatcaccag catcccggag
      421 acagagccgc tgcagtcacc cacggccaag gtgaagctgg aatgcaaccc caccgcccgc
      481 atctaccgca agcactttct tggcaaggag cattttaatt actactcact ggacaccgcc
      541 ctgggccacc ttgtcttctc actcaagtat gatgtcatcg gggaccagga acacctgcgt
      601 ctgctgctca ggaccaagtg ccggacatac catgacgtca tccccatctc ctgcctcact
      661 gagttcccca acgtggtcca gatggcaaag ctggtgtgtg aagacgtgaa tgtggatcga
      721 ttctatcctg tgctctaccc caaggcctcc cgcctcatcg tcaccttcga cgagcatgtc
      781 atcagcaata acttcaagtt cggagtcatt tatcagaagc ttgggcagac ctccgaggaa
      841 gaactcttca gcaccaacga ggagagccct gccttcgtgg agttcctcga attccttggc
      901 cagaaggtca aactgcagga ctttaagggg ttccgaggag gcctggacgt gacccacggg
      961 cagacgggaa ccgagtctgt gtactgcaac ttccgcaaca aggagatcat gtttcacgtg
     1021 tccaccaagc tgccctacac agaaggggac gcccagcagt tacagcggaa gcgtcacatc
     1081 gggaacgaca tcgtggctgt ggtcttccag gacgagaaca cgccctttgt gccggacatg
     1141 attgcgtcca actttctgca tgcctatgtg gtggtgcagg ccgagagtgg gggccccgat
     1201 ggccccctgt acaaggtctc cgtcactgcg agagacgacg tgcccttctt cgggccaccc
     1261 ctcccggacc ctgctgtgtt caggaagggg cccgagttcc aggaattttt gctgacaaaa
     1321 ctgatcaatg ctgaatatgc ttgctacaag gcagagaagt ttgccaaact ggaggagcgg
     1381 acacgggccg ccctcctgga gacgctctat gaggagctgc acatccacag ccagtccatg
     1441 atgggcctgg gtggagacga ggacaagatg gagaacggcg gcgggggcgg cggcttcttc
     1501 gaatccttca agcgggtcat ccggagccgc agccagtcca tggatgccat ggggctgagc
     1561 aacaagaagc ccaacaccgt gtccaccagc cacagcggga gctttgcgcc caacaacccg
     1621 gacctggcca aggcggctgg aatatcattg cttattcctg ggaaaagtgc gagtagattc
     1681 ggacgccggg gcagtgccat aggcatagga accgtggaag agtccctgat tgtccctgga
     1741 aagagcccca ccaggaagaa gtcgggcccg ttcggctcac gccgcagcag tgccatcggc
     1801 attgagaaca tacaggaggt gcaggagaaa agggagagcc ccccggctgg ccagaagacc
     1861 ccagacagcg ggcacgtctc acaggagccc aagtcggaga actcatccac tcagagctcc
     1921 ccagagatgc ccacgaccaa aaacagagcg gagacagcag ctcagagagc agaagtgctg
     1981 aaggacttct cccgctcctc gtccagtgcc agcagcttcg ccagcgtcgt ggaggaaaca
     2041 gagggtgtgg acggggacga tacaggcctg gagagtgtct catcctcggg gacgccccac
     2101 aagcgggact ccttcatcta tagcacgtgg ctggaggaca gtgtcagcac cacaagtggg
     2161 ggcagctccc cagtgaggtg gctccctcct gcctccctcc ccaggcccct ctcggtcacc
     2221 ctacccagac gccggcaagt cgggggaccc tgcatgtccc gagatcaaga tccagctgga
     2281 agcatctgaa cagcacacgc cccagctggg ctgttagcca ggatggccct ctgaaggtga
     2341 cactgagcag aagcacgagg ggaagatgct gtgtcaaatc caggcagacg ggacctctgc
     2401 ccccgaggcc agcaccagcc tgtgggctgc ccccggcctc cccagccctc ctcctggccc
     2461 actgtctggg ctgtctctgc agggcggagc catccagacc tgggagcggg gaagctgctg
     2521 gcactatccc caccccctgg gctggggggc cggctggggc agggagtggt cacttgaaac
     2581 aggactccag gcctggccat ccatcacccc tgggtggccc tctggactca gggggagtga
     2641 gctggaaggg gggattgaga catctcagtg catacagagc ctactgtgga agccgtgggg
     2701 tgtgaggtgt ggtagaatga gcactggact gggagtccta agtcctagct tttaatttgg
     2761 gttctgctct gtgactatgg gcaaatcact ctccctctct gggcgcctct gctataaatg
     2821 gacaagatta tttcagaggt cactgaaggc tgtgagtcca tgcacctgcc ccagaatgga
     2881 ggattgtcgt cctagagacc tcccatcacc ctaccctgct tcttggggtt cctggggccc
     2941 ccggtgggcc gaggctgtgc ccattgcccc tcctggaccc tcagtctcta ccgcagatct
     3001 gccgatgccc tgtccactgc ctccacgaca gacgagtgac ccgcttgtgg gggaagtggg
     3061 agctgcctgg ctcctcagcc agcacccagc ttaacccctg ccttcccatg ctcctgggca
     3121 cgccgggccg aggggtctca gctggcctag agttatgggc cgcacctttg cgccaccctc
     3181 acccaccacg gagggggcag ccaggcacag ctgctgtgag tccacatcct tgtgtgcgtc
     3241 tgtccacact ttttaggcgc cacgccaaag gccagcctcc tggccccaac acccattttg
     3301 gaagcccccc atggccgtgt gtatgtcagt aacagttgta caaaataaat tctatttatc
     3361 gctattgta
//
LOCUS       XM_032608962            3338 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X4, mRNA.
ACCESSION   XM_032608962
VERSION     XM_032608962.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3338
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3338
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     CDS             25..2286
                     /gene="RAP1GAP"
                     /codon_start=1
                     /product="rap1 GTPase-activating protein 1 isoform X2"
                     /protein_id="XP_032464853.1"
                     /db_xref="GeneID:116741844"
                     /translation="MSGRKRSFTFGAYGGVDKSFTPHRSAWRSDGQNLRFPQALDLPR
                     VDLAPSQTASLHPKNTDLFEMIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLG
                     REGPFPLILLPQFGGYWIEGTNHEITSIPETEPLQSPTAKVKLECNPTARIYRKHFLG
                     KEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFPNVV
                     QMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEELFS
                     TNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVST
                     KLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAESGGPD
                     GPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLE
                     ERTRAALLETLYEELHIHSQSMMGLGGDEDKMENGGGGGGFFESFKRVIRSRSQSMDA
                     MGLSNKKPNTVSTSHSGSFAPNNPDLAKAAGISLLIPGKSASRFGRRGSAIGIGTVEE
                     SLIVPGKSPTRKKSGPFGSRRSSAIGIENIQEVQEKRESPPAGQKTPDSGHVSQEPKS
                     ENSSTQSSPEMPTTKNRAETAAQRAEVLKDFSRSSSSASSFASVVEETEGVDGDDTGL
                     ESVSSSGTPHKRDSFIYSTWLEDSVSTTSGGSSPGPSRSPYPDAGKSGDPACPEIKIQ
                     LEASEQHTPQLGC"
     misc_feature    205..267
                     /gene="RAP1GAP"
                     /note="LGN motif, putative GEFs specific for G-alpha
                     GTPases; Region: GoLoco; smart00390"
                     /db_xref="CDD:214645"
     misc_feature    847..1386
                     /gene="RAP1GAP"
                     /note="Rap/ran-GAP; Region: Rap_GAP; pfam02145"
                     /db_xref="CDD:460463"
ORIGIN      
        1 ggtggcgcgg gcggtggcag caccatgagc ggccggaagc gcagcttcac cttcggggcc
       61 tacggagggg tggacaagtc cttcacccct caccggagtg cgtggaggag tgatgggcag
      121 aacctgcgct tccctcaggc actagacctg ccacgagtgg acttagctcc ctcccagact
      181 gcttcactcc accctaagaa cacagatctg tttgagatga ttgaaaagat gcagggaagc
      241 aggatggatg aacagcgatg ctccttccca ccacccctca aaacggagga ggactacatt
      301 ccctacccga gcgtccacga ggtcctgggg cgagaagggc ccttccccct tatcctgctg
      361 ccccagtttg ggggctactg gattgaaggc accaatcacg aaatcaccag catcccggag
      421 acagagccgc tgcagtcacc cacggccaag gtgaagctgg aatgcaaccc caccgcccgc
      481 atctaccgca agcactttct tggcaaggag cattttaatt actactcact ggacaccgcc
      541 ctgggccacc ttgtcttctc actcaagtat gatgtcatcg gggaccagga acacctgcgt
      601 ctgctgctca ggaccaagtg ccggacatac catgacgtca tccccatctc ctgcctcact
      661 gagttcccca acgtggtcca gatggcaaag ctggtgtgtg aagacgtgaa tgtggatcga
      721 ttctatcctg tgctctaccc caaggcctcc cgcctcatcg tcaccttcga cgagcatgtc
      781 atcagcaata acttcaagtt cggagtcatt tatcagaagc ttgggcagac ctccgaggaa
      841 gaactcttca gcaccaacga ggagagccct gccttcgtgg agttcctcga attccttggc
      901 cagaaggtca aactgcagga ctttaagggg ttccgaggag gcctggacgt gacccacggg
      961 cagacgggaa ccgagtctgt gtactgcaac ttccgcaaca aggagatcat gtttcacgtg
     1021 tccaccaagc tgccctacac agaaggggac gcccagcagt tacagcggaa gcgtcacatc
     1081 gggaacgaca tcgtggctgt ggtcttccag gacgagaaca cgccctttgt gccggacatg
     1141 attgcgtcca actttctgca tgcctatgtg gtggtgcagg ccgagagtgg gggccccgat
     1201 ggccccctgt acaaggtctc cgtcactgcg agagacgacg tgcccttctt cgggccaccc
     1261 ctcccggacc ctgctgtgtt caggaagggg cccgagttcc aggaattttt gctgacaaaa
     1321 ctgatcaatg ctgaatatgc ttgctacaag gcagagaagt ttgccaaact ggaggagcgg
     1381 acacgggccg ccctcctgga gacgctctat gaggagctgc acatccacag ccagtccatg
     1441 atgggcctgg gtggagacga ggacaagatg gagaacggcg gcgggggcgg cggcttcttc
     1501 gaatccttca agcgggtcat ccggagccgc agccagtcca tggatgccat ggggctgagc
     1561 aacaagaagc ccaacaccgt gtccaccagc cacagcggga gctttgcgcc caacaacccg
     1621 gacctggcca aggcggctgg aatatcattg cttattcctg ggaaaagtgc gagtagattc
     1681 ggacgccggg gcagtgccat aggcatagga accgtggaag agtccctgat tgtccctgga
     1741 aagagcccca ccaggaagaa gtcgggcccg ttcggctcac gccgcagcag tgccatcggc
     1801 attgagaaca tacaggaggt gcaggagaaa agggagagcc ccccggctgg ccagaagacc
     1861 ccagacagcg ggcacgtctc acaggagccc aagtcggaga actcatccac tcagagctcc
     1921 ccagagatgc ccacgaccaa aaacagagcg gagacagcag ctcagagagc agaagtgctg
     1981 aaggacttct cccgctcctc gtccagtgcc agcagcttcg ccagcgtcgt ggaggaaaca
     2041 gagggtgtgg acggggacga tacaggcctg gagagtgtct catcctcggg gacgccccac
     2101 aagcgggact ccttcatcta tagcacgtgg ctggaggaca gtgtcagcac cacaagtggg
     2161 ggcagctccc caggcccctc tcggtcaccc tacccagacg ccggcaagtc gggggaccct
     2221 gcatgtcccg agatcaagat ccagctggaa gcatctgaac agcacacgcc ccagctgggc
     2281 tgttagccag gatggccctc tgaaggtgac actgagcaga agcacgaggg gaagatgctg
     2341 tgtcaaatcc aggcagacgg gacctctgcc cccgaggcca gcaccagcct gtgggctgcc
     2401 cccggcctcc ccagccctcc tcctggccca ctgtctgggc tgtctctgca gggcggagcc
     2461 atccagacct gggagcgggg aagctgctgg cactatcccc accccctggg ctggggggcc
     2521 ggctggggca gggagtggtc acttgaaaca ggactccagg cctggccatc catcacccct
     2581 gggtggccct ctggactcag ggggagtgag ctggaagggg ggattgagac atctcagtgc
     2641 atacagagcc tactgtggaa gccgtggggt gtgaggtgtg gtagaatgag cactggactg
     2701 ggagtcctaa gtcctagctt ttaatttggg ttctgctctg tgactatggg caaatcactc
     2761 tccctctctg ggcgcctctg ctataaatgg acaagattat ttcagaggtc actgaaggct
     2821 gtgagtccat gcacctgccc cagaatggag gattgtcgtc ctagagacct cccatcaccc
     2881 taccctgctt cttggggttc ctggggcccc cggtgggccg aggctgtgcc cattgcccct
     2941 cctggaccct cagtctctac cgcagatctg ccgatgccct gtccactgcc tccacgacag
     3001 acgagtgacc cgcttgtggg ggaagtggga gctgcctggc tcctcagcca gcacccagct
     3061 taacccctgc cttcccatgc tcctgggcac gccgggccga ggggtctcag ctggcctaga
     3121 gttatgggcc gcacctttgc gccaccctca cccaccacgg agggggcagc caggcacagc
     3181 tgctgtgagt ccacatcctt gtgtgcgtct gtccacactt tttaggcgcc acgccaaagg
     3241 ccagcctcct ggccccaaca cccattttgg aagcccccca tggccgtgtg tatgtcagta
     3301 acagttgtac aaaataaatt ctatttatcg ctattgta
//
LOCUS       XR_004346297            3333 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X5, misc_RNA.
ACCESSION   XR_004346297
VERSION     XR_004346297.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3333
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     misc_RNA        1..3333
                     /gene="RAP1GAP"
                     /product="RAP1 GTPase activating protein, transcript
                     variant X5"
                     /db_xref="GeneID:116741844"
ORIGIN      
        1 ggtggcgcgg gcggtggcag caccatgagc ggccggaagc gcagcttcac cttcggggcc
       61 tacggagggg tggacaagtc cttcacccct caccggagtg cgtggaggag tgatgggcag
      121 aacctgcgct tccctcaggc actagacctg ccacgagtgg acttagctcc ctcccagact
      181 gcttcactcc accctaagaa cacagatctg tttgagatga ttgaaaagat gcagggaagc
      241 aggatggatg aacagcgatg ctccttccca ccacccctca aaacggagga ggactacatt
      301 ccctacccga gcgtccacga ggtcctgggg cgagaagggc ccttccccct tatcctgctg
      361 ccccagtttg ggggctactg gattgaaggc accaatcacg aaatcaccag catcccggag
      421 acagagccgc tgcagtcacc cacggccaag gtgaagctgg aatgcaaccc caccgcccgc
      481 atctaccgca agcactttct tggcaaggag cattttaatt actactcact ggacaccgcc
      541 ctgggccacc ttgtcttctc actcaagtat gatgtcatcg gggaccagga acacctgcgt
      601 ctgctgctca ggaccaagtg ccggacatac catgacgtca tccccatctc ctgcctcact
      661 gagttcccca acgtggtcca gatggcaaag ctggtgtgtg aagacgtgaa tgtggatcga
      721 ttctatcctg tgctctaccc caaggcctcc cgcctcatcg tcaccttcga cgagcatgtc
      781 atcagcaata acttcaagtt cggagtcatt tatcagaagc ttgggcagac ctccgaggaa
      841 gaactcttca gcaccaacga ggagagccct gccttcgtgg agttcctcga attccttggc
      901 cagaaggtca aactgcagga ctttaagggg ttccgaggag gcctggacgt gacccacggg
      961 cagacgggaa ccgagtctgt gtactgcaac ttccgcaaca aggagatcat gtttcacgtg
     1021 tccaccaagc tgccctacac agaaggggac gcccagcagt tacagcggaa gcgtcacatc
     1081 gggaacgaca tcgtggctgt ggtcttccag gacgagaaca cgccctttgt gccggacatg
     1141 attgcgtcca actttctgca tgcctatgtg gtggtgcagg ccgagagtgg gggccccgat
     1201 ggccccctgt acaaggtctc cgtcactgcg agagacgacg tgcccttctt cgggccaccc
     1261 ctcccggacc ctgctgtgtt caggaagggg cccgagttcc aggaattttt gctgacaaaa
     1321 ctgatcaatg ctgaatatgc ttgctacaag gcagagaagt ttgccaaact ggaggagcgg
     1381 acacgggccg ccctcctgga gacgctctat gaggagctgc acatccacag ccagtccatg
     1441 atgggcctgg gtggagacga ggacaagatg gagaacggcg gcgggggcgg cggcttcttc
     1501 gaatccttca agcgggtcat ccggagccgc agccagtcca tggatgccat ggggctgagc
     1561 aacaagaagc ccaacaccgt gtccaccagc cacagcggga gctttgcgcc caacaacccg
     1621 gacctggcca aggcggctgg aatatccctg attgtccctg gaaagagccc caccaggaag
     1681 aagtcgggcc cgttcggctc acgccgcagc agtgccatcg gcattgagaa catacaggag
     1741 gtgcaggaga aaaggcctgg tgctgaatcc ccccgctgcc cccatgtgcc ccgcagggag
     1801 agccccccgg ctggccagaa gaccccagac agcgggcacg tctcacagga gcccaagtcg
     1861 gagaactcat ccactcagag ctccccagag atgcccacga ccaaaaacag agcggagaca
     1921 gcagctcaga gagcagaagt gctgaaggac ttctcccgct cctcgtccag tgccagcagc
     1981 ttcgccagcg tcgtggagga aacagagggt gtggacgggg acgatacagg cctggagagt
     2041 gtctcatcct cggggacgcc ccacaagcgg gactccttca tctatagcac gtggctggag
     2101 gacagtgtca gcaccacaag tgggggcagc tccccagtga ggtggctccc tcctgcctcc
     2161 ctccccaggc ccctctcggt caccctaccc agacgccggc aagtcggggg accctgcatg
     2221 tcccgagatc aagatccagc tggaagcatc tgaacagcac acgccccagc tgggctgtta
     2281 gccaggatgg ccctctgaag gtgacactga gcagaagcac gaggggaaga tgctgtgtca
     2341 aatccaggca gacgggacct ctgcccccga ggccagcacc agcctgtggg ctgcccccgg
     2401 cctccccagc cctcctcctg gcccactgtc tgggctgtct ctgcagggcg gagccatcca
     2461 gacctgggag cggggaagct gctggcacta tccccacccc ctgggctggg gggccggctg
     2521 gggcagggag tggtcacttg aaacaggact ccaggcctgg ccatccatca cccctgggtg
     2581 gccctctgga ctcaggggga gtgagctgga aggggggatt gagacatctc agtgcataca
     2641 gagcctactg tggaagccgt ggggtgtgag gtgtggtaga atgagcactg gactgggagt
     2701 cctaagtcct agcttttaat ttgggttctg ctctgtgact atgggcaaat cactctccct
     2761 ctctgggcgc ctctgctata aatggacaag attatttcag aggtcactga aggctgtgag
     2821 tccatgcacc tgccccagaa tggaggattg tcgtcctaga gacctcccat caccctaccc
     2881 tgcttcttgg ggttcctggg gcccccggtg ggccgaggct gtgcccattg cccctcctgg
     2941 accctcagtc tctaccgcag atctgccgat gccctgtcca ctgcctccac gacagacgag
     3001 tgacccgctt gtgggggaag tgggagctgc ctggctcctc agccagcacc cagcttaacc
     3061 cctgccttcc catgctcctg ggcacgccgg gccgaggggt ctcagctggc ctagagttat
     3121 gggccgcacc tttgcgccac cctcacccac cacggagggg gcagccaggc acagctgctg
     3181 tgagtccaca tccttgtgtg cgtctgtcca cactttttag gcgccacgcc aaaggccagc
     3241 ctcctggccc caacacccat tttggaagcc ccccatggcc gtgtgtatgt cagtaacagt
     3301 tgtacaaaat aaattctatt tatcgctatt gta
//
LOCUS       XR_004346299            3401 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X6, misc_RNA.
ACCESSION   XR_004346299
VERSION     XR_004346299.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3401
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3401
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     misc_RNA        1..3401
                     /gene="RAP1GAP"
                     /product="RAP1 GTPase activating protein, transcript
                     variant X6"
                     /db_xref="GeneID:116741844"
ORIGIN      
        1 gggagcgcgg agctcggcgc tgcggggccc gggccggggt tcgcgcgggc cggagccggc
       61 tgggtcagct aaagcgctgc cggggtgggg gccggggccg ggccgagctc aggatggcgc
      121 agccgcggcc cctggagccc ccgggccgtc ctcggagggg atcactgccc tctggggccg
      181 gctggcagaa cacagatctg tttgagatga ttgaaaagat gcagggaagc aggatggatg
      241 aacagcgatg ctccttccca ccacccctca aaacggagga ggactacatt ccctacccga
      301 gcgtccacga ggtcctgggg cgagaagggc ccttccccct tatcctgctg ccccagtttg
      361 ggggctactg gattgaaggc accaatcacg aaatcaccag catcccggag acagagccgc
      421 tgcagtcacc cacggccaag gtgaagctgg aatgcaaccc caccgcccgc atctaccgca
      481 agcactttct tggcaaggag cattttaatt actactcact ggacaccgcc ctgggccacc
      541 ttgtcttctc actcaagtat gatgtcatcg gggaccagga acacctgcgt ctgctgctca
      601 ggaccaagtg ccggacatac catgacgtca tccccatctc ctgcctcact gagttcccca
      661 acgtggtcca gatggcaaag ctggtgtgtg aagacgtgaa tgtggatcga ttctatcctg
      721 tgctctaccc caaggcctcc cgcctcatcg tcaccttcga cgagcatgtc atcagcaata
      781 acttcaagtt cggagtcatt tatcagaagc ttgggcagac ctccgaggaa gaactcttca
      841 gcaccaacga ggagagccct gccttcgtgg agttcctcga attccttggc cagaaggtca
      901 aactgcagga ctttaagggg ttccgaggag gcctggacgt gacccacggg cagacgggaa
      961 ccgagtctgt gtactgcaac ttccgcaaca aggagatcat gtttcacgtg tccaccaagc
     1021 tgccctacac agaaggggac gcccagcagt tacagcggaa gcgtcacatc gggaacgaca
     1081 tcgtggctgt ggtcttccag gacgagaaca cgccctttgt gccggacatg attgcgtcca
     1141 actttctgca tgcctatgtg gtggtgcagg ccgagagtgg gggccccgat ggccccctgt
     1201 acaaggtctc cgtcactgcg agagacgacg tgcccttctt cgggccaccc ctcccggacc
     1261 ctgctgtgtt caggaagggg cccgagttcc aggaattttt gctgacaaaa ctgatcaatg
     1321 ctgaatatgc ttgctacaag gcagagaagt ttgccaaact ggaggagcgg acacgggccg
     1381 ccctcctgga gacgctctat gaggagctgc acatccacag ccagtccatg atgggcctgg
     1441 gtggagacga ggacaagatg gagaacggcg gcgggggcgg cggcttcttc gaatccttca
     1501 agcgggtcat ccggagccgc agccagtcca tggatgccat ggggctgagc aacaagaagc
     1561 ccaacaccgt gtccaccagc cacagcggga gctttgcgcc caacaacccg gacctggcca
     1621 aggcggctgg aatatcattg cttattcctg ggaaaagtgc gagtagattc ggacgccggg
     1681 gcagtgccat aggcatagga accgtggaag agtccctgat tgtccctgga aagagcccca
     1741 ccaggaagaa gtcgggcccg ttcggctcac gccgcagcag tgccatcggc attgagaaca
     1801 tacaggaggt gcaggagaaa aggcctggtg ctgaatcccc ccgctgcccc catgtgcccc
     1861 gcagggagag ccccccggct ggccagaaga ccccagacag cgggcacgtc tcacaggagc
     1921 ccaagtcgga gaactcatcc actcagagct ccccagagat gcccacgacc aaaaacagag
     1981 cggagacagc agctcagaga gcagaagtgc tgaaggactt ctcccgctcc tcgtccagtg
     2041 ccagcagctt cgccagcgtc gtggaggaaa cagagggtgt ggacggggac gatacaggcc
     2101 tggagagtgt ctcatcctcg gggacgcccc acaagcggga ctccttcatc tatagcacgt
     2161 ggctggagga cagtgtcagc accacaagtg ggggcagctc cccagtgagg tggctccctc
     2221 ctgcctccct ccccaggccc ctctcggtca ccctacccag acgccggcaa gtcgggggac
     2281 cctgcatgtc ccgagatcaa gatccagctg gaagcatctg aacagcacac gccccagctg
     2341 ggctgttagc caggatggcc ctctgaaggt gacactgagc agaagcacga ggggaagatg
     2401 ctgtgtcaaa tccaggcaga cgggacctct gcccccgagg ccagcaccag cctgtgggct
     2461 gcccccggcc tccccagccc tcctcctggc ccactgtctg ggctgtctct gcagggcgga
     2521 gccatccaga cctgggagcg gggaagctgc tggcactatc cccaccccct gggctggggg
     2581 gccggctggg gcagggagtg gtcacttgaa acaggactcc aggcctggcc atccatcacc
     2641 cctgggtggc cctctggact cagggggagt gagctggaag gggggattga gacatctcag
     2701 tgcatacaga gcctactgtg gaagccgtgg ggtgtgaggt gtggtagaat gagcactgga
     2761 ctgggagtcc taagtcctag cttttaattt gggttctgct ctgtgactat gggcaaatca
     2821 ctctccctct ctgggcgcct ctgctataaa tggacaagat tatttcagag gtcactgaag
     2881 gctgtgagtc catgcacctg ccccagaatg gaggattgtc gtcctagaga cctcccatca
     2941 ccctaccctg cttcttgggg ttcctggggc ccccggtggg ccgaggctgt gcccattgcc
     3001 cctcctggac cctcagtctc taccgcagat ctgccgatgc cctgtccact gcctccacga
     3061 cagacgagtg acccgcttgt gggggaagtg ggagctgcct ggctcctcag ccagcaccca
     3121 gcttaacccc tgccttccca tgctcctggg cacgccgggc cgaggggtct cagctggcct
     3181 agagttatgg gccgcacctt tgcgccaccc tcacccacca cggagggggc agccaggcac
     3241 agctgctgtg agtccacatc cttgtgtgcg tctgtccaca ctttttaggc gccacgccaa
     3301 aggccagcct cctggcccca acacccattt tggaagcccc ccatggccgt gtgtatgtca
     3361 gtaacagttg tacaaaataa attctattta tcgctattgt a
//
LOCUS       XR_004346300            3291 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X7, misc_RNA.
ACCESSION   XR_004346300
VERSION     XR_004346300.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3291
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     misc_RNA        1..3291
                     /gene="RAP1GAP"
                     /product="RAP1 GTPase activating protein, transcript
                     variant X7"
                     /db_xref="GeneID:116741844"
ORIGIN      
        1 ggtggcgcgg gcggtggcag caccatgagc ggccggaagc gcagcttcac cttcggggcc
       61 tacggagggg tggacaagtc cttcacccct caccggagtg cgtggaggag tgatgggcag
      121 aacctgcgct tccctcaggc actagacctg ccacgagtgg acttagctcc ctcccagact
      181 gcttcactcc accctaagaa cacagatctg tttgagatga ttgaaaagat gcagggaagc
      241 aggatggatg aacagcgatg ctccttccca ccacccctca aaacggagga ggactacatt
      301 ccctacccga gcgtccacga ggtcctgggg cgagaagggc ccttccccct tatcctgctg
      361 ccccagtttg ggggctactg gattgaaggc accaatcacg aaatcaccag catcccggag
      421 acagagccgc tgcagtcacc cacggccaag gtgaagctgg aatgcaaccc caccgcccgc
      481 atctaccgca agcactttct tggcaaggag cattttaatt actactcact ggacaccgcc
      541 ctgggccacc ttgtcttctc actcaagtat gatgtcatcg gggaccagga acacctgcgt
      601 ctgctgctca ggaccaagtg ccggacatac catgacgtca tccccatctc ctgcctcact
      661 gagttcccca acgtggtcca gatggcaaag ctggtgtgtg aagacgtgaa tgtggatcga
      721 ttctatcctg tgctctaccc caaggcctcc cgcctcatcg tcaccttcga cgagcatgtc
      781 atcagcaata acttcaagtt cggagtcatt tatcagaagc ttgggcagac ctccgaggaa
      841 gaactcttca gcaccaacga ggagagccct gccttcgtgg agttcctcga attccttggc
      901 cagaaggtca aactgcagga ctttaagggg ttccgaggag gcctggacgt gacccacggg
      961 cagacgggaa ccgagtctgt gtactgcaac ttccgcaaca aggagatcat gtttcacgtg
     1021 tccaccaagc tgccctacac agaaggggac gcccagcagt tacagcggaa gcgtcacatc
     1081 gggaacgaca tcgtggctgt ggtcttccag gacgagaaca cgccctttgt gccggacatg
     1141 attgcgtcca actttctgca tgcctatgtg gtggtgcagg ccgagagtgg gggccccgat
     1201 ggccccctgt acaaggtctc cgtcactgcg agagacgacg tgcccttctt cgggccaccc
     1261 ctcccggacc ctgctgtgtt caggaagggg cccgagttcc aggaattttt gctgacaaaa
     1321 ctgatcaatg ctgaatatgc ttgctacaag gcagagaagt ttgccaaact ggaggagcgg
     1381 acacgggccg ccctcctgga gacgctctat gaggagctgc acatccacag ccagtccatg
     1441 atgggcctgg gtggagacga ggacaagatg gagaacggcg gcgggggcgg cggcttcttc
     1501 gaatccttca agcgggtcat ccggagccgc agccagtcca tggatgccat ggggctgagc
     1561 aacaagaagc ccaacaccgt gtccaccagc cacagcggga gctttgcgcc caacaacccg
     1621 gacctggcca aggcggctgg aatatccctg attgtccctg gaaagagccc caccaggaag
     1681 aagtcgggcc cgttcggctc acgccgcagc agtgccatcg gcattgagaa catacaggag
     1741 gtgcaggaga aaagggagag ccccccggct ggccagaaga ccccagacag cgggcacgtc
     1801 tcacaggagc ccaagtcgga gaactcatcc actcagagct ccccagagat gcccacgacc
     1861 aaaaacagag cggagacagc agctcagaga gcagaagtgc tgaaggactt ctcccgctcc
     1921 tcgtccagtg ccagcagctt cgccagcgtc gtggaggaaa cagagggtgt ggacggggac
     1981 gatacaggcc tggagagtgt ctcatcctcg gggacgcccc acaagcggga ctccttcatc
     2041 tatagcacgt ggctggagga cagtgtcagc accacaagtg ggggcagctc cccagtgagg
     2101 tggctccctc ctgcctccct ccccaggccc ctctcggtca ccctacccag acgccggcaa
     2161 gtcgggggac cctgcatgtc ccgagatcaa gatccagctg gaagcatctg aacagcacac
     2221 gccccagctg ggctgttagc caggatggcc ctctgaaggt gacactgagc agaagcacga
     2281 ggggaagatg ctgtgtcaaa tccaggcaga cgggacctct gcccccgagg ccagcaccag
     2341 cctgtgggct gcccccggcc tccccagccc tcctcctggc ccactgtctg ggctgtctct
     2401 gcagggcgga gccatccaga cctgggagcg gggaagctgc tggcactatc cccaccccct
     2461 gggctggggg gccggctggg gcagggagtg gtcacttgaa acaggactcc aggcctggcc
     2521 atccatcacc cctgggtggc cctctggact cagggggagt gagctggaag gggggattga
     2581 gacatctcag tgcatacaga gcctactgtg gaagccgtgg ggtgtgaggt gtggtagaat
     2641 gagcactgga ctgggagtcc taagtcctag cttttaattt gggttctgct ctgtgactat
     2701 gggcaaatca ctctccctct ctgggcgcct ctgctataaa tggacaagat tatttcagag
     2761 gtcactgaag gctgtgagtc catgcacctg ccccagaatg gaggattgtc gtcctagaga
     2821 cctcccatca ccctaccctg cttcttgggg ttcctggggc ccccggtggg ccgaggctgt
     2881 gcccattgcc cctcctggac cctcagtctc taccgcagat ctgccgatgc cctgtccact
     2941 gcctccacga cagacgagtg acccgcttgt gggggaagtg ggagctgcct ggctcctcag
     3001 ccagcaccca gcttaacccc tgccttccca tgctcctggg cacgccgggc cgaggggtct
     3061 cagctggcct agagttatgg gccgcacctt tgcgccaccc tcacccacca cggagggggc
     3121 agccaggcac agctgctgtg agtccacatc cttgtgtgcg tctgtccaca ctttttaggc
     3181 gccacgccaa aggccagcct cctggcccca acacccattt tggaagcccc ccatggccgt
     3241 gtgtatgtca gtaacagttg tacaaaataa attctattta tcgctattgt a
//
LOCUS       XM_032608982            3260 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X8, mRNA.
ACCESSION   XM_032608982
VERSION     XM_032608982.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3260
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     CDS             25..2208
                     /gene="RAP1GAP"
                     /codon_start=1
                     /product="rap1 GTPase-activating protein 1 isoform X3"
                     /protein_id="XP_032464873.1"
                     /db_xref="GeneID:116741844"
                     /translation="MSGRKRSFTFGAYGGVDKSFTPHRSAWRSDGQNLRFPQALDLPR
                     VDLAPSQTASLHPKNTDLFEMIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLG
                     REGPFPLILLPQFGGYWIEGTNHEITSIPETEPLQSPTAKVKLECNPTARIYRKHFLG
                     KEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFPNVV
                     QMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEELFS
                     TNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVST
                     KLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAESGGPD
                     GPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLE
                     ERTRAALLETLYEELHIHSQSMMGLGGDEDKMENGGGGGGFFESFKRVIRSRSQSMDA
                     MGLSNKKPNTVSTSHSGSFAPNNPDLAKAAGISLIVPGKSPTRKKSGPFGSRRSSAIG
                     IENIQEVQEKRESPPAGQKTPDSGHVSQEPKSENSSTQSSPEMPTTKNRAETAAQRAE
                     VLKDFSRSSSSASSFASVVEETEGVDGDDTGLESVSSSGTPHKRDSFIYSTWLEDSVS
                     TTSGGSSPGPSRSPYPDAGKSGDPACPEIKIQLEASEQHTPQLGC"
     misc_feature    205..267
                     /gene="RAP1GAP"
                     /note="LGN motif, putative GEFs specific for G-alpha
                     GTPases; Region: GoLoco; smart00390"
                     /db_xref="CDD:214645"
     misc_feature    847..1386
                     /gene="RAP1GAP"
                     /note="Rap/ran-GAP; Region: Rap_GAP; pfam02145"
                     /db_xref="CDD:460463"
ORIGIN      
        1 ggtggcgcgg gcggtggcag caccatgagc ggccggaagc gcagcttcac cttcggggcc
       61 tacggagggg tggacaagtc cttcacccct caccggagtg cgtggaggag tgatgggcag
      121 aacctgcgct tccctcaggc actagacctg ccacgagtgg acttagctcc ctcccagact
      181 gcttcactcc accctaagaa cacagatctg tttgagatga ttgaaaagat gcagggaagc
      241 aggatggatg aacagcgatg ctccttccca ccacccctca aaacggagga ggactacatt
      301 ccctacccga gcgtccacga ggtcctgggg cgagaagggc ccttccccct tatcctgctg
      361 ccccagtttg ggggctactg gattgaaggc accaatcacg aaatcaccag catcccggag
      421 acagagccgc tgcagtcacc cacggccaag gtgaagctgg aatgcaaccc caccgcccgc
      481 atctaccgca agcactttct tggcaaggag cattttaatt actactcact ggacaccgcc
      541 ctgggccacc ttgtcttctc actcaagtat gatgtcatcg gggaccagga acacctgcgt
      601 ctgctgctca ggaccaagtg ccggacatac catgacgtca tccccatctc ctgcctcact
      661 gagttcccca acgtggtcca gatggcaaag ctggtgtgtg aagacgtgaa tgtggatcga
      721 ttctatcctg tgctctaccc caaggcctcc cgcctcatcg tcaccttcga cgagcatgtc
      781 atcagcaata acttcaagtt cggagtcatt tatcagaagc ttgggcagac ctccgaggaa
      841 gaactcttca gcaccaacga ggagagccct gccttcgtgg agttcctcga attccttggc
      901 cagaaggtca aactgcagga ctttaagggg ttccgaggag gcctggacgt gacccacggg
      961 cagacgggaa ccgagtctgt gtactgcaac ttccgcaaca aggagatcat gtttcacgtg
     1021 tccaccaagc tgccctacac agaaggggac gcccagcagt tacagcggaa gcgtcacatc
     1081 gggaacgaca tcgtggctgt ggtcttccag gacgagaaca cgccctttgt gccggacatg
     1141 attgcgtcca actttctgca tgcctatgtg gtggtgcagg ccgagagtgg gggccccgat
     1201 ggccccctgt acaaggtctc cgtcactgcg agagacgacg tgcccttctt cgggccaccc
     1261 ctcccggacc ctgctgtgtt caggaagggg cccgagttcc aggaattttt gctgacaaaa
     1321 ctgatcaatg ctgaatatgc ttgctacaag gcagagaagt ttgccaaact ggaggagcgg
     1381 acacgggccg ccctcctgga gacgctctat gaggagctgc acatccacag ccagtccatg
     1441 atgggcctgg gtggagacga ggacaagatg gagaacggcg gcgggggcgg cggcttcttc
     1501 gaatccttca agcgggtcat ccggagccgc agccagtcca tggatgccat ggggctgagc
     1561 aacaagaagc ccaacaccgt gtccaccagc cacagcggga gctttgcgcc caacaacccg
     1621 gacctggcca aggcggctgg aatatccctg attgtccctg gaaagagccc caccaggaag
     1681 aagtcgggcc cgttcggctc acgccgcagc agtgccatcg gcattgagaa catacaggag
     1741 gtgcaggaga aaagggagag ccccccggct ggccagaaga ccccagacag cgggcacgtc
     1801 tcacaggagc ccaagtcgga gaactcatcc actcagagct ccccagagat gcccacgacc
     1861 aaaaacagag cggagacagc agctcagaga gcagaagtgc tgaaggactt ctcccgctcc
     1921 tcgtccagtg ccagcagctt cgccagcgtc gtggaggaaa cagagggtgt ggacggggac
     1981 gatacaggcc tggagagtgt ctcatcctcg gggacgcccc acaagcggga ctccttcatc
     2041 tatagcacgt ggctggagga cagtgtcagc accacaagtg ggggcagctc cccaggcccc
     2101 tctcggtcac cctacccaga cgccggcaag tcgggggacc ctgcatgtcc cgagatcaag
     2161 atccagctgg aagcatctga acagcacacg ccccagctgg gctgttagcc aggatggccc
     2221 tctgaaggtg acactgagca gaagcacgag gggaagatgc tgtgtcaaat ccaggcagac
     2281 gggacctctg cccccgaggc cagcaccagc ctgtgggctg cccccggcct ccccagccct
     2341 cctcctggcc cactgtctgg gctgtctctg cagggcggag ccatccagac ctgggagcgg
     2401 ggaagctgct ggcactatcc ccaccccctg ggctgggggg ccggctgggg cagggagtgg
     2461 tcacttgaaa caggactcca ggcctggcca tccatcaccc ctgggtggcc ctctggactc
     2521 agggggagtg agctggaagg ggggattgag acatctcagt gcatacagag cctactgtgg
     2581 aagccgtggg gtgtgaggtg tggtagaatg agcactggac tgggagtcct aagtcctagc
     2641 ttttaatttg ggttctgctc tgtgactatg ggcaaatcac tctccctctc tgggcgcctc
     2701 tgctataaat ggacaagatt atttcagagg tcactgaagg ctgtgagtcc atgcacctgc
     2761 cccagaatgg aggattgtcg tcctagagac ctcccatcac cctaccctgc ttcttggggt
     2821 tcctggggcc cccggtgggc cgaggctgtg cccattgccc ctcctggacc ctcagtctct
     2881 accgcagatc tgccgatgcc ctgtccactg cctccacgac agacgagtga cccgcttgtg
     2941 ggggaagtgg gagctgcctg gctcctcagc cagcacccag cttaacccct gccttcccat
     3001 gctcctgggc acgccgggcc gaggggtctc agctggccta gagttatggg ccgcaccttt
     3061 gcgccaccct cacccaccac ggagggggca gccaggcaca gctgctgtga gtccacatcc
     3121 ttgtgtgcgt ctgtccacac tttttaggcg ccacgccaaa ggccagcctc ctggccccaa
     3181 cacccatttt ggaagccccc catggccgtg tgtatgtcag taacagttgt acaaaataaa
     3241 ttctatttat cgctattgta
//
LOCUS       XR_004346301            3409 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X9, misc_RNA.
ACCESSION   XR_004346301
VERSION     XR_004346301.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3409
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3409
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     misc_RNA        1..3409
                     /gene="RAP1GAP"
                     /product="RAP1 GTPase activating protein, transcript
                     variant X9"
                     /db_xref="GeneID:116741844"
ORIGIN      
        1 gctaggactg agcagccgat gggtgctggg aaagcccctg cgcatgagct ccggccaccc
       61 tttccctggg tgctaagggc ggcggcctgt gccggcccat cggaggagtg atgggcagaa
      121 cctgcgcttc cctcaggcac tagacctgcc acgagtggac ttagctccct cccagactgc
      181 ttcactccac cctaagaaca cagatctgtt tgagatgatt gaaaagatgc agggaagcag
      241 gatggatgaa cagcgatgct ccttcccacc acccctcaaa acggaggagg actacattcc
      301 ctacccgagc gtccacgagg tcctggggcg agaagggccc ttccccctta tcctgctgcc
      361 ccagtttggg ggctactgga ttgaaggcac caatcacgaa atcaccagca tcccggagac
      421 agagccgctg cagtcaccca cggccaaggt gaagctggaa tgcaacccca ccgcccgcat
      481 ctaccgcaag cactttcttg gcaaggagca ttttaattac tactcactgg acaccgccct
      541 gggccacctt gtcttctcac tcaagtatga tgtcatcggg gaccaggaac acctgcgtct
      601 gctgctcagg accaagtgcc ggacatacca tgacgtcatc cccatctcct gcctcactga
      661 gttccccaac gtggtccaga tggcaaagct ggtgtgtgaa gacgtgaatg tggatcgatt
      721 ctatcctgtg ctctacccca aggcctcccg cctcatcgtc accttcgacg agcatgtcat
      781 cagcaataac ttcaagttcg gagtcattta tcagaagctt gggcagacct ccgaggaaga
      841 actcttcagc accaacgagg agagccctgc cttcgtggag ttcctcgaat tccttggcca
      901 gaaggtcaaa ctgcaggact ttaaggggtt ccgaggaggc ctggacgtga cccacgggca
      961 gacgggaacc gagtctgtgt actgcaactt ccgcaacaag gagatcatgt ttcacgtgtc
     1021 caccaagctg ccctacacag aaggggacgc ccagcagtta cagcggaagc gtcacatcgg
     1081 gaacgacatc gtggctgtgg tcttccagga cgagaacacg ccctttgtgc cggacatgat
     1141 tgcgtccaac tttctgcatg cctatgtggt ggtgcaggcc gagagtgggg gccccgatgg
     1201 ccccctgtac aaggtctccg tcactgcgag agacgacgtg cccttcttcg ggccacccct
     1261 cccggaccct gctgtgttca ggaaggggcc cgagttccag gaatttttgc tgacaaaact
     1321 gatcaatgct gaatatgctt gctacaaggc agagaagttt gccaaactgg aggagcggac
     1381 acgggccgcc ctcctggaga cgctctatga ggagctgcac atccacagcc agtccatgat
     1441 gggcctgggt ggagacgagg acaagatgga gaacggcggc gggggcggcg gcttcttcga
     1501 atccttcaag cgggtcatcc ggagccgcag ccagtccatg gatgccatgg ggctgagcaa
     1561 caagaagccc aacaccgtgt ccaccagcca cagcgggagc tttgcgccca acaacccgga
     1621 cctggccaag gcggctggaa tatcattgct tattcctggg aaaagtgcga gtagattcgg
     1681 acgccggggc agtgccatag gcataggaac cgtggaagag tccctgattg tccctggaaa
     1741 gagccccacc aggaagaagt cgggcccgtt cggctcacgc cgcagcagtg ccatcggcat
     1801 tgagaacata caggaggtgc aggagaaaag gcctggtgct gaatcccccc gctgccccca
     1861 tgtgccccgc agggagagcc ccccggctgg ccagaagacc ccagacagcg ggcacgtctc
     1921 acaggagccc aagtcggaga actcatccac tcagagctcc ccagagatgc ccacgaccaa
     1981 aaacagagcg gagacagcag ctcagagagc agaagtgctg aaggacttct cccgctcctc
     2041 gtccagtgcc agcagcttcg ccagcgtcgt ggaggaaaca gagggtgtgg acggggacga
     2101 tacaggcctg gagagtgtct catcctcggg gacgccccac aagcgggact ccttcatcta
     2161 tagcacgtgg ctggaggaca gtgtcagcac cacaagtggg ggcagctccc cagtgaggtg
     2221 gctccctcct gcctccctcc ccaggcccct ctcggtcacc ctacccagac gccggcaagt
     2281 cgggggaccc tgcatgtccc gagatcaaga tccagctgga agcatctgaa cagcacacgc
     2341 cccagctggg ctgttagcca ggatggccct ctgaaggtga cactgagcag aagcacgagg
     2401 ggaagatgct gtgtcaaatc caggcagacg ggacctctgc ccccgaggcc agcaccagcc
     2461 tgtgggctgc ccccggcctc cccagccctc ctcctggccc actgtctggg ctgtctctgc
     2521 agggcggagc catccagacc tgggagcggg gaagctgctg gcactatccc caccccctgg
     2581 gctggggggc cggctggggc agggagtggt cacttgaaac aggactccag gcctggccat
     2641 ccatcacccc tgggtggccc tctggactca gggggagtga gctggaaggg gggattgaga
     2701 catctcagtg catacagagc ctactgtgga agccgtgggg tgtgaggtgt ggtagaatga
     2761 gcactggact gggagtccta agtcctagct tttaatttgg gttctgctct gtgactatgg
     2821 gcaaatcact ctccctctct gggcgcctct gctataaatg gacaagatta tttcagaggt
     2881 cactgaaggc tgtgagtcca tgcacctgcc ccagaatgga ggattgtcgt cctagagacc
     2941 tcccatcacc ctaccctgct tcttggggtt cctggggccc ccggtgggcc gaggctgtgc
     3001 ccattgcccc tcctggaccc tcagtctcta ccgcagatct gccgatgccc tgtccactgc
     3061 ctccacgaca gacgagtgac ccgcttgtgg gggaagtggg agctgcctgg ctcctcagcc
     3121 agcacccagc ttaacccctg ccttcccatg ctcctgggca cgccgggccg aggggtctca
     3181 gctggcctag agttatgggc cgcacctttg cgccaccctc acccaccacg gagggggcag
     3241 ccaggcacag ctgctgtgag tccacatcct tgtgtgcgtc tgtccacact ttttaggcgc
     3301 cacgccaaag gccagcctcc tggccccaac acccattttg gaagcccccc atggccgtgt
     3361 gtatgtcagt aacagttgta caaaataaat tctatttatc gctattgta
//
LOCUS       XR_004346302            3415 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X10, misc_RNA.
ACCESSION   XR_004346302
VERSION     XR_004346302.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3415
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     misc_RNA        1..3415
                     /gene="RAP1GAP"
                     /product="RAP1 GTPase activating protein, transcript
                     variant X10"
                     /db_xref="GeneID:116741844"
ORIGIN      
        1 ccgaccagag ctgcagcggc tgccgcgggc tccggagcgc cgagcccagg aagccccggc
       61 ccaggcccgc ggggtggaca agtccttcac ccctcaccgg agtgcgtgga ggagtgatgg
      121 gcagaacctg cgcttccctc aggcactaga cctgccacga gtggacttag ctccctccca
      181 gactgcttca ctccacccta agaacacaga tctgtttgag atgattgaaa agatgcaggg
      241 aagcaggatg gatgaacagc gatgctcctt cccaccaccc ctcaaaacgg aggaggacta
      301 cattccctac ccgagcgtcc acgaggtcct ggggcgagaa gggcccttcc cccttatcct
      361 gctgccccag tttgggggct actggattga aggcaccaat cacgaaatca ccagcatccc
      421 ggagacagag ccgctgcagt cacccacggc caaggtgaag ctggaatgca accccaccgc
      481 ccgcatctac cgcaagcact ttcttggcaa ggagcatttt aattactact cactggacac
      541 cgccctgggc caccttgtct tctcactcaa gtatgatgtc atcggggacc aggaacacct
      601 gcgtctgctg ctcaggacca agtgccggac ataccatgac gtcatcccca tctcctgcct
      661 cactgagttc cccaacgtgg tccagatggc aaagctggtg tgtgaagacg tgaatgtgga
      721 tcgattctat cctgtgctct accccaaggc ctcccgcctc atcgtcacct tcgacgagca
      781 tgtcatcagc aataacttca agttcggagt catttatcag aagcttgggc agacctccga
      841 ggaagaactc ttcagcacca acgaggagag ccctgccttc gtggagttcc tcgaattcct
      901 tggccagaag gtcaaactgc aggactttaa ggggttccga ggaggcctgg acgtgaccca
      961 cgggcagacg ggaaccgagt ctgtgtactg caacttccgc aacaaggaga tcatgtttca
     1021 cgtgtccacc aagctgccct acacagaagg ggacgcccag cagttacagc ggaagcgtca
     1081 catcgggaac gacatcgtgg ctgtggtctt ccaggacgag aacacgccct ttgtgccgga
     1141 catgattgcg tccaactttc tgcatgccta tgtggtggtg caggccgaga gtgggggccc
     1201 cgatggcccc ctgtacaagg tctccgtcac tgcgagagac gacgtgccct tcttcgggcc
     1261 acccctcccg gaccctgctg tgttcaggaa ggggcccgag ttccaggaat ttttgctgac
     1321 aaaactgatc aatgctgaat atgcttgcta caaggcagag aagtttgcca aactggagga
     1381 gcggacacgg gccgccctcc tggagacgct ctatgaggag ctgcacatcc acagccagtc
     1441 catgatgggc ctgggtggag acgaggacaa gatggagaac ggcggcgggg gcggcggctt
     1501 cttcgaatcc ttcaagcggg tcatccggag ccgcagccag tccatggatg ccatggggct
     1561 gagcaacaag aagcccaaca ccgtgtccac cagccacagc gggagctttg cgcccaacaa
     1621 cccggacctg gccaaggcgg ctggaatatc attgcttatt cctgggaaaa gtgcgagtag
     1681 attcggacgc cggggcagtg ccataggcat aggaaccgtg gaagagtccc tgattgtccc
     1741 tggaaagagc cccaccagga agaagtcggg cccgttcggc tcacgccgca gcagtgccat
     1801 cggcattgag aacatacagg aggtgcagga gaaaaggcct ggtgctgaat ccccccgctg
     1861 cccccatgtg ccccgcaggg agagcccccc ggctggccag aagaccccag acagcgggca
     1921 cgtctcacag gagcccaagt cggagaactc atccactcag agctccccag agatgcccac
     1981 gaccaaaaac agagcggaga cagcagctca gagagcagaa gtgctgaagg acttctcccg
     2041 ctcctcgtcc agtgccagca gcttcgccag cgtcgtggag gaaacagagg gtgtggacgg
     2101 ggacgataca ggcctggaga gtgtctcatc ctcggggacg ccccacaagc gggactcctt
     2161 catctatagc acgtggctgg aggacagtgt cagcaccaca agtgggggca gctccccagt
     2221 gaggtggctc cctcctgcct ccctccccag gcccctctcg gtcaccctac ccagacgccg
     2281 gcaagtcggg ggaccctgca tgtcccgaga tcaagatcca gctggaagca tctgaacagc
     2341 acacgcccca gctgggctgt tagccaggat ggccctctga aggtgacact gagcagaagc
     2401 acgaggggaa gatgctgtgt caaatccagg cagacgggac ctctgccccc gaggccagca
     2461 ccagcctgtg ggctgccccc ggcctcccca gccctcctcc tggcccactg tctgggctgt
     2521 ctctgcaggg cggagccatc cagacctggg agcggggaag ctgctggcac tatccccacc
     2581 ccctgggctg gggggccggc tggggcaggg agtggtcact tgaaacagga ctccaggcct
     2641 ggccatccat cacccctggg tggccctctg gactcagggg gagtgagctg gaagggggga
     2701 ttgagacatc tcagtgcata cagagcctac tgtggaagcc gtggggtgtg aggtgtggta
     2761 gaatgagcac tggactggga gtcctaagtc ctagctttta atttgggttc tgctctgtga
     2821 ctatgggcaa atcactctcc ctctctgggc gcctctgcta taaatggaca agattatttc
     2881 agaggtcact gaaggctgtg agtccatgca cctgccccag aatggaggat tgtcgtccta
     2941 gagacctccc atcaccctac cctgcttctt ggggttcctg gggcccccgg tgggccgagg
     3001 ctgtgcccat tgcccctcct ggaccctcag tctctaccgc agatctgccg atgccctgtc
     3061 cactgcctcc acgacagacg agtgacccgc ttgtggggga agtgggagct gcctggctcc
     3121 tcagccagca cccagcttaa cccctgcctt cccatgctcc tgggcacgcc gggccgaggg
     3181 gtctcagctg gcctagagtt atgggccgca cctttgcgcc accctcaccc accacggagg
     3241 gggcagccag gcacagctgc tgtgagtcca catccttgtg tgcgtctgtc cacacttttt
     3301 aggcgccacg ccaaaggcca gcctcctggc cccaacaccc attttggaag ccccccatgg
     3361 ccgtgtgtat gtcagtaaca gttgtacaaa ataaattcta tttatcgcta ttgta
//
LOCUS       XR_004346304            3295 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAP1 GTPase activating protein (RAP1GAP),
            transcript variant X11, misc_RNA.
ACCESSION   XR_004346304
VERSION     XR_004346304.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3295
                     /gene="RAP1GAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741844"
     misc_RNA        1..3295
                     /gene="RAP1GAP"
                     /product="RAP1 GTPase activating protein, transcript
                     variant X11"
                     /db_xref="GeneID:116741844"
ORIGIN      
        1 ccgaccagag ctgcagcggc tgccgcgggc tccggagcgc cgagcccagg aagccccggc
       61 ccaggcccgc ggggtggaca agtccttcac ccctcaccgg agtgcgtgga ggagtgatgg
      121 gcagaacctg cgcttccctc aggcactaga cctgccacga gtggacttag ctccctccca
      181 gactgcttca ctccacccta agaacacaga tctgtttgag atgattgaaa agatgcaggg
      241 aagcaggatg gatgaacagc gatgctcctt cccaccaccc ctcaaaacgg aggaggacta
      301 cattccctac ccgagcgtcc acgaggtcct ggggcgagaa gggcccttcc cccttatcct
      361 gctgccccag tttgggggct actggattga aggcaccaat cacgaaatca ccagcatccc
      421 ggagacagag ccgctgcagt cacccacggc caaggtgaag ctggaatgca accccaccgc
      481 ccgcatctac cgcaagcact ttcttggcaa ggagcatttt aattactact cactggacac
      541 cgccctgggc caccttgtct tctcactcaa gtatgatgtc atcggggacc aggaacacct
      601 gcgtctgctg ctcaggacca agtgccggac ataccatgac gtcatcccca tctcctgcct
      661 cactgagttc cccaacgtgg tccagatggc aaagctggtg tgtgaagacg tgaatgtgga
      721 tcgattctat cctgtgctct accccaaggc ctcccgcctc atcgtcacct tcgacgagca
      781 tgtcatcagc aataacttca agttcggagt catttatcag aagcttgggc agacctccga
      841 ggaagaactc ttcagcacca acgaggagag ccctgccttc gtggagttcc tcgaattcct
      901 tggccagaag gtcaaactgc aggactttaa ggggttccga ggaggcctgg acgtgaccca
      961 cgggcagacg ggaaccgagt ctgtgtactg caacttccgc aacaaggaga tcatgtttca
     1021 cgtgtccacc aagctgccct acacagaagg ggacgcccag cagttacagc ggaagcgtca
     1081 catcgggaac gacatcgtgg ctgtggtctt ccaggacgag aacacgccct ttgtgccgga
     1141 catgattgcg tccaactttc tgcatgccta tgtggtggtg caggccgaga gtgggggccc
     1201 cgatggcccc ctgtacaagg tctccgtcac tgcgagagac gacgtgccct tcttcgggcc
     1261 acccctcccg gaccctgctg tgttcaggaa ggggcccgag ttccaggaat ttttgctgac
     1321 aaaactgatc aatgctgaat atgcttgcta caaggcagag aagtttgcca aactggagga
     1381 gcggacacgg gccgccctcc tggagacgct ctatgaggag ctgcacatcc acagccagtc
     1441 catgatgggc ctgggtggag acgaggacaa gatggagaac ggcggcgggg gcggcggctt
     1501 cttcgaatcc ttcaagcggg tcatccggag ccgcagccag tccatggatg ccatggggct
     1561 gagcaacaag aagcccaaca ccgtgtccac cagccacagc gggagctttg cgcccaacaa
     1621 cccggacctg gccaaggcgg ctggaatatc cctgattgtc cctggaaaga gccccaccag
     1681 gaagaagtcg ggcccgttcg gctcacgccg cagcagtgcc atcggcattg agaacataca
     1741 ggaggtgcag gagaaaaggg agagcccccc ggctggccag aagaccccag acagcgggca
     1801 cgtctcacag gagcccaagt cggagaactc atccactcag agctccccag agatgcccac
     1861 gaccaaaaac agagcggaga cagcagctca gagagcagaa gtgctgaagg acttctcccg
     1921 ctcctcgtcc agtgccagca gcttcgccag cgtcgtggag gaaacagagg gtgtggacgg
     1981 ggacgataca ggcctggaga gtgtctcatc ctcggggacg ccccacaagc gggactcctt
     2041 catctatagc acgtggctgg aggacagtgt cagcaccaca agtgggggca gctccccagt
     2101 gaggtggctc cctcctgcct ccctccccag gcccctctcg gtcaccctac ccagacgccg
     2161 gcaagtcggg ggaccctgca tgtcccgaga tcaagatcca gctggaagca tctgaacagc
     2221 acacgcccca gctgggctgt tagccaggat ggccctctga aggtgacact gagcagaagc
     2281 acgaggggaa gatgctgtgt caaatccagg cagacgggac ctctgccccc gaggccagca
     2341 ccagcctgtg ggctgccccc ggcctcccca gccctcctcc tggcccactg tctgggctgt
     2401 ctctgcaggg cggagccatc cagacctggg agcggggaag ctgctggcac tatccccacc
     2461 ccctgggctg gggggccggc tggggcaggg agtggtcact tgaaacagga ctccaggcct
     2521 ggccatccat cacccctggg tggccctctg gactcagggg gagtgagctg gaagggggga
     2581 ttgagacatc tcagtgcata cagagcctac tgtggaagcc gtggggtgtg aggtgtggta
     2641 gaatgagcac tggactggga gtcctaagtc ctagctttta atttgggttc tgctctgtga
     2701 ctatgggcaa atcactctcc ctctctgggc gcctctgcta taaatggaca agattatttc
     2761 agaggtcact gaaggctgtg agtccatgca cctgccccag aatggaggat tgtcgtccta
     2821 gagacctccc atcaccctac cctgcttctt ggggttcctg gggcccccgg tgggccgagg
     2881 ctgtgcccat tgcccctcct ggaccctcag tctctaccgc agatctgccg atgccctgtc
     2941 cactgcctcc acgacagacg agtgacccgc ttgtggggga agtgggagct gcctggctcc
     3001 tcagccagca cccagcttaa cccctgcctt cccatgctcc tgggcacgcc gggccgaggg
     3061 gtctcagctg gcctagagtt atgggccgca cctttgcgcc accctcaccc accacggagg
     3121 gggcagccag gcacagctgc tgtgagtcca catccttgtg tgcgtctgtc cacacttttt
     3181 aggcgccacg ccaaaggcca gcctcctggc cccaacaccc attttggaag ccccccatgg
     3241 ccgtgtgtat gtcagtaaca gttgtacaaa ataaattcta tttatcgcta ttgta
//
LOCUS       XM_032609012            3047 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus splA/ryanodine receptor domain and SOCS
            box containing 1 (SPSB1), transcript variant X1, mRNA.
ACCESSION   XM_032609012
VERSION     XM_032609012.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3047
                     /gene="SPSB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 17 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741861"
     CDS             329..1150
                     /gene="SPSB1"
                     /codon_start=1
                     /product="SPRY domain-containing SOCS box protein 1"
                     /protein_id="XP_032464903.1"
                     /db_xref="GeneID:116741861"
                     /translation="MGQKVTGGIKTVDMRDPTYRPLKQELQGLDYCKPTRLDLLLDMP
                     PVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQI
                     TWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKT
                     YPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWG
                     HCEIRMRYLNGLDPEPLPLMDLCRRSVRLALGKERLGEIHALPLPASLKAYLHYQ"
     misc_feature    488..1009
                     /gene="SPSB1"
                     /note="SPRY domain in the suppressor of cytokine signaling
                     1, 2, 4 families (SOCS1, SOCS2, SOCS4); Region:
                     SPRY_SOCS1-2-4; cd12906"
                     /db_xref="CDD:293963"
     misc_feature    order(557..559,563..565,659..661,713..715,974..982)
                     /gene="SPSB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293963"
     misc_feature    1022..1147
                     /gene="SPSB1"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; Region: SOCS;
                     cl02533"
                     /db_xref="CDD:470605"
     misc_feature    order(1025..1042,1058..1060,1088..1090,1106..1108)
                     /gene="SPSB1"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
ORIGIN      
        1 tttctttctt cgcacagaag tcgcgctcgg cagcccgcgc gctcggcagc ccgcgcgctc
       61 gcaggaacca ggctccaggc gctggcgccg gggccgcggg gaggaggcgg ctcctctccc
      121 ggcggcagaa gcctcctcgg ccccggagag cgggcggcgg cggcagcctc cccggaacgg
      181 cagtaccaga tgctccacac cgggcagagg ccgcctagca aactccctta ggagtgccgt
      241 ccaggcctga ttgggaaact ggagaagagg ccccgtgatt gatgagtttg ccttgggcgt
      301 tggtgaccag gtgaaacggg aggccgacat gggtcagaag gtcactggag gtatcaagac
      361 ggtggacatg agggacccca cgtaccggcc cttgaagcag gagctccagg gtctggacta
      421 ctgcaagccc acccgcctgg acctgctgct ggacatgccc cccgtgtcct acgacgtcca
      481 gctgctccac tcctggaaca acaatgaccg ctcgctcaac gtcttcgtga aggaggacga
      541 caagctgatc tttcaccggc atccggtggc ccagagcacg gacgccatca ggggcaaagt
      601 cgggtacaca cgcgggctgc acgtgtggca gatcacgtgg gccatgaggc agcgtggcac
      661 ccacgccgtg gtgggggtgg cgacggcaga cgcccccctg cactccgtgg ggtacacgac
      721 actcgtgggg aataaccacg agtcctgggg ctgggacttg gggcgcaacc ggctctacca
      781 tgacggcaaa aaccagccga gcaaaacgta cccagccttt ctggagccgg acgagacgtt
      841 cattgtccct gactccttcc tggtggccct ggatatggac gacgggaccc tgagcttcat
      901 tgtggatgga cagtacatgg gagtagcttt tcggggactc aagggcaaaa aactttatcc
      961 cgtagtgagt gccgtctggg gccactgtga gatccgcatg cgctacttga atggacttga
     1021 cccggagccc ctgccgctca tggatctgtg ccgccgctcg gtgcgcctgg ccctggggaa
     1081 ggagcgcctg ggtgagatcc acgcgctgcc actgcccgcc tccctcaagg cctacctcca
     1141 ctaccagtga tgccccaccc gggaccgcca gcacggccgc ccctggccat cccggtgcca
     1201 actcactgag ccaccgccgt gcccacgccc tggaccgctg tctgcggcat ggaagtcctg
     1261 cccttcctct gcagcctccc cggctgcccc gccagatacg gactgcgctg gacacgggcc
     1321 cctctgtccc ccttccggac actggcagaa gttccccgca tgccgcctca cagcccctcc
     1381 tgggaagagg acacagagga taaactacac tgagctccaa tctgctctcg gggtggcctg
     1441 ggtgcccccg cacctgccgg gtcccatggc gccaagagca gatcccgggg gtgctaagag
     1501 gtgcttagat gagggccggt gcccgcccag cagggcagcc gcgccggacg aagctcagga
     1561 cgtcaggagc tcaccgtggc caccgaggcg gaaaccaaac cgggaccttc cccaggcacg
     1621 tgagcaccca gcattagtcc tggctgtcgg tgcccctgta ccctgtattt attcttttaa
     1681 caataacaaa agccatttat ttattccact tagaaaggac accttgttcg ggtcacctct
     1741 ctctggagtg ttctgttgct tttcttccac ctgcccctcc ctgggatgtg tgtgcctcac
     1801 ctggcctttt cgctgggtcg tgtcggtcgt gtgtccccac gtgggcacag gggtgtcttt
     1861 gtctgggtcc cttgacctac agtttccagg gggctctgct ccgagtgccc gagtgggcgc
     1921 ctgaggggac atcagcctca cgtgcaatat gagtgccttg ggggacccgt ctgcacgggc
     1981 agtggcagct ccccgtatct ctccaggcag ccacccatcg ctagggctca tccgtctttg
     2041 cgcgtggttt tatttcttta gtcttctgtg aggtttttcg gtgtgggttg ggttttgttt
     2101 ttgctttact acctgagatt tgccacgtgc atccccggaa gctctagctt ccctgaggac
     2161 cacccgaacc gagatgggag gatgagtgag tctccatccc ctgagaggct gggggcaggg
     2221 cggggtgggg gagaccagag cggagttgcg tgtcctagaa gccagtgcag gtctccgctt
     2281 ggtgcccctg tctgggttca tcacggtgcc ccagagccgt gaggtggggc agggggtcgg
     2341 ggcggacagc cagcaggaga gggacgcacc ctcccatgca cacctccccc atgtagcaga
     2401 ccccagcacc tgccggcaca gtcaccgttt cttatgtctt gaagtcgact cttagaatct
     2461 gccttctgtt catttctgta caggtacagt agatgacttt atttgtttaa aatgtttaat
     2521 atatatgcat atatatttgt ctgtaagaat tgtgttttaa acagctgctg tagggtacct
     2581 tttaaaaaaa aagaaaaaaa tgtcttccag tggagtatat tttttaaagc acaaaattag
     2641 tgccaagact gggtgaggaa tgtaaattac ccccttatta tttggaggtt ttatgtcccc
     2701 cagcgggtgg ggggaaccta acctgtaaga cttttaaaga ttttcctcac tcctgtttcg
     2761 gggtgggtca tgttctgacg aatgttacac acgagagggt ctcacttata cagatcccag
     2821 ccttatcgcc ttgacccagc cgtctcccac agacgctgga caaatcaccg gggtccttgc
     2881 catctctctg cacctcccgc ccccacagct ccctaaacct tgaccccacc cttctttcct
     2941 ctcagcccgg agccttgtgg cctgtacagt tttgaaactc ccgttctgtt ttatgatggt
     3001 tgataatagt cacctaataa aggaaagttt attaaaatac acaaaca
//
LOCUS       XM_032609021            3161 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus splA/ryanodine receptor domain and SOCS
            box containing 1 (SPSB1), transcript variant X2, mRNA.
ACCESSION   XM_032609021
VERSION     XM_032609021.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3161
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3161
                     /gene="SPSB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741861"
     CDS             443..1264
                     /gene="SPSB1"
                     /codon_start=1
                     /product="SPRY domain-containing SOCS box protein 1"
                     /protein_id="XP_032464912.1"
                     /db_xref="GeneID:116741861"
                     /translation="MGQKVTGGIKTVDMRDPTYRPLKQELQGLDYCKPTRLDLLLDMP
                     PVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQI
                     TWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKT
                     YPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWG
                     HCEIRMRYLNGLDPEPLPLMDLCRRSVRLALGKERLGEIHALPLPASLKAYLHYQ"
     misc_feature    602..1123
                     /gene="SPSB1"
                     /note="SPRY domain in the suppressor of cytokine signaling
                     1, 2, 4 families (SOCS1, SOCS2, SOCS4); Region:
                     SPRY_SOCS1-2-4; cd12906"
                     /db_xref="CDD:293963"
     misc_feature    order(671..673,677..679,773..775,827..829,1088..1096)
                     /gene="SPSB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293963"
     misc_feature    1136..1261
                     /gene="SPSB1"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; Region: SOCS;
                     cl02533"
                     /db_xref="CDD:470605"
     misc_feature    order(1139..1156,1172..1174,1202..1204,1220..1222)
                     /gene="SPSB1"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
ORIGIN      
        1 tcgcgctcgg cagcccgcgc gctcggcagc ccgcgcgctc gcaggaacca ggctccaggc
       61 gctggcgccg gggccgcggg gaggaggcgg ctcctctccc ggcggcagaa gcctcctcgg
      121 ccccggagag cgggcggcgg cggcagcctc cccggaacgg ctccatcgtg ctcctcggaa
      181 caagtggccc tgggatgctt ctccagcagg cgccgatggc ctcttgccca gctcctctgt
      241 atcctcgttt ggtcgtgttt atgtagccag gagcctgcct gctccctcgt ctggcagtac
      301 cagatgctcc acaccgggca gaggccgcct agcaaactcc cttaggagtg ccgtccaggc
      361 ctgattggga aactggagaa gaggccccgt gattgatgag tttgccttgg gcgttggtga
      421 ccaggtgaaa cgggaggccg acatgggtca gaaggtcact ggaggtatca agacggtgga
      481 catgagggac cccacgtacc ggcccttgaa gcaggagctc cagggtctgg actactgcaa
      541 gcccacccgc ctggacctgc tgctggacat gccccccgtg tcctacgacg tccagctgct
      601 ccactcctgg aacaacaatg accgctcgct caacgtcttc gtgaaggagg acgacaagct
      661 gatctttcac cggcatccgg tggcccagag cacggacgcc atcaggggca aagtcgggta
      721 cacacgcggg ctgcacgtgt ggcagatcac gtgggccatg aggcagcgtg gcacccacgc
      781 cgtggtgggg gtggcgacgg cagacgcccc cctgcactcc gtggggtaca cgacactcgt
      841 ggggaataac cacgagtcct ggggctggga cttggggcgc aaccggctct accatgacgg
      901 caaaaaccag ccgagcaaaa cgtacccagc ctttctggag ccggacgaga cgttcattgt
      961 ccctgactcc ttcctggtgg ccctggatat ggacgacggg accctgagct tcattgtgga
     1021 tggacagtac atgggagtag cttttcgggg actcaagggc aaaaaacttt atcccgtagt
     1081 gagtgccgtc tggggccact gtgagatccg catgcgctac ttgaatggac ttgacccgga
     1141 gcccctgccg ctcatggatc tgtgccgccg ctcggtgcgc ctggccctgg ggaaggagcg
     1201 cctgggtgag atccacgcgc tgccactgcc cgcctccctc aaggcctacc tccactacca
     1261 gtgatgcccc acccgggacc gccagcacgg ccgcccctgg ccatcccggt gccaactcac
     1321 tgagccaccg ccgtgcccac gccctggacc gctgtctgcg gcatggaagt cctgcccttc
     1381 ctctgcagcc tccccggctg ccccgccaga tacggactgc gctggacacg ggcccctctg
     1441 tcccccttcc ggacactggc agaagttccc cgcatgccgc ctcacagccc ctcctgggaa
     1501 gaggacacag aggataaact acactgagct ccaatctgct ctcggggtgg cctgggtgcc
     1561 cccgcacctg ccgggtccca tggcgccaag agcagatccc gggggtgcta agaggtgctt
     1621 agatgagggc cggtgcccgc ccagcagggc agccgcgccg gacgaagctc aggacgtcag
     1681 gagctcaccg tggccaccga ggcggaaacc aaaccgggac cttccccagg cacgtgagca
     1741 cccagcatta gtcctggctg tcggtgcccc tgtaccctgt atttattctt ttaacaataa
     1801 caaaagccat ttatttattc cacttagaaa ggacaccttg ttcgggtcac ctctctctgg
     1861 agtgttctgt tgcttttctt ccacctgccc ctccctggga tgtgtgtgcc tcacctggcc
     1921 ttttcgctgg gtcgtgtcgg tcgtgtgtcc ccacgtgggc acaggggtgt ctttgtctgg
     1981 gtcccttgac ctacagtttc cagggggctc tgctccgagt gcccgagtgg gcgcctgagg
     2041 ggacatcagc ctcacgtgca atatgagtgc cttgggggac ccgtctgcac gggcagtggc
     2101 agctccccgt atctctccag gcagccaccc atcgctaggg ctcatccgtc tttgcgcgtg
     2161 gttttatttc tttagtcttc tgtgaggttt ttcggtgtgg gttgggtttt gtttttgctt
     2221 tactacctga gatttgccac gtgcatcccc ggaagctcta gcttccctga ggaccacccg
     2281 aaccgagatg ggaggatgag tgagtctcca tcccctgaga ggctgggggc agggcggggt
     2341 gggggagacc agagcggagt tgcgtgtcct agaagccagt gcaggtctcc gcttggtgcc
     2401 cctgtctggg ttcatcacgg tgccccagag ccgtgaggtg gggcaggggg tcggggcgga
     2461 cagccagcag gagagggacg caccctccca tgcacacctc ccccatgtag cagaccccag
     2521 cacctgccgg cacagtcacc gtttcttatg tcttgaagtc gactcttaga atctgccttc
     2581 tgttcatttc tgtacaggta cagtagatga ctttatttgt ttaaaatgtt taatatatat
     2641 gcatatatat ttgtctgtaa gaattgtgtt ttaaacagct gctgtagggt accttttaaa
     2701 aaaaaagaaa aaaatgtctt ccagtggagt atatttttta aagcacaaaa ttagtgccaa
     2761 gactgggtga ggaatgtaaa ttaccccctt attatttgga ggttttatgt cccccagcgg
     2821 gtggggggaa cctaacctgt aagactttta aagattttcc tcactcctgt ttcggggtgg
     2881 gtcatgttct gacgaatgtt acacacgaga gggtctcact tatacagatc ccagccttat
     2941 cgccttgacc cagccgtctc ccacagacgc tggacaaatc accggggtcc ttgccatctc
     3001 tctgcacctc ccgcccccac agctccctaa accttgaccc cacccttctt tcctctcagc
     3061 ccggagcctt gtggcctgta cagttttgaa actcccgttc tgttttatga tggttgataa
     3121 tagtcaccta ataaaggaaa gtttattaaa atacacaaac a
//
LOCUS       XM_032609030            2939 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus splA/ryanodine receptor domain and SOCS
            box containing 1 (SPSB1), transcript variant X3, mRNA.
ACCESSION   XM_032609030
VERSION     XM_032609030.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2939
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2939
                     /gene="SPSB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741861"
     CDS             221..1042
                     /gene="SPSB1"
                     /codon_start=1
                     /product="SPRY domain-containing SOCS box protein 1"
                     /protein_id="XP_032464921.1"
                     /db_xref="GeneID:116741861"
                     /translation="MGQKVTGGIKTVDMRDPTYRPLKQELQGLDYCKPTRLDLLLDMP
                     PVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQI
                     TWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKT
                     YPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWG
                     HCEIRMRYLNGLDPEPLPLMDLCRRSVRLALGKERLGEIHALPLPASLKAYLHYQ"
     misc_feature    380..901
                     /gene="SPSB1"
                     /note="SPRY domain in the suppressor of cytokine signaling
                     1, 2, 4 families (SOCS1, SOCS2, SOCS4); Region:
                     SPRY_SOCS1-2-4; cd12906"
                     /db_xref="CDD:293963"
     misc_feature    order(449..451,455..457,551..553,605..607,866..874)
                     /gene="SPSB1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293963"
     misc_feature    914..1039
                     /gene="SPSB1"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; Region: SOCS;
                     cl02533"
                     /db_xref="CDD:470605"
     misc_feature    order(917..934,950..952,980..982,998..1000)
                     /gene="SPSB1"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
ORIGIN      
        1 tcccgggttc tgtgtctgcg tcctcactca ccgccagctt ttgagcttaa gcagtccttt
       61 gctcaagcaa ggcagtacca gatgctccac accgggcaga ggccgcctag caaactccct
      121 taggagtgcc gtccaggcct gattgggaaa ctggagaaga ggccccgtga ttgatgagtt
      181 tgccttgggc gttggtgacc aggtgaaacg ggaggccgac atgggtcaga aggtcactgg
      241 aggtatcaag acggtggaca tgagggaccc cacgtaccgg cccttgaagc aggagctcca
      301 gggtctggac tactgcaagc ccacccgcct ggacctgctg ctggacatgc cccccgtgtc
      361 ctacgacgtc cagctgctcc actcctggaa caacaatgac cgctcgctca acgtcttcgt
      421 gaaggaggac gacaagctga tctttcaccg gcatccggtg gcccagagca cggacgccat
      481 caggggcaaa gtcgggtaca cacgcgggct gcacgtgtgg cagatcacgt gggccatgag
      541 gcagcgtggc acccacgccg tggtgggggt ggcgacggca gacgcccccc tgcactccgt
      601 ggggtacacg acactcgtgg ggaataacca cgagtcctgg ggctgggact tggggcgcaa
      661 ccggctctac catgacggca aaaaccagcc gagcaaaacg tacccagcct ttctggagcc
      721 ggacgagacg ttcattgtcc ctgactcctt cctggtggcc ctggatatgg acgacgggac
      781 cctgagcttc attgtggatg gacagtacat gggagtagct tttcggggac tcaagggcaa
      841 aaaactttat cccgtagtga gtgccgtctg gggccactgt gagatccgca tgcgctactt
      901 gaatggactt gacccggagc ccctgccgct catggatctg tgccgccgct cggtgcgcct
      961 ggccctgggg aaggagcgcc tgggtgagat ccacgcgctg ccactgcccg cctccctcaa
     1021 ggcctacctc cactaccagt gatgccccac ccgggaccgc cagcacggcc gcccctggcc
     1081 atcccggtgc caactcactg agccaccgcc gtgcccacgc cctggaccgc tgtctgcggc
     1141 atggaagtcc tgcccttcct ctgcagcctc cccggctgcc ccgccagata cggactgcgc
     1201 tggacacggg cccctctgtc ccccttccgg acactggcag aagttccccg catgccgcct
     1261 cacagcccct cctgggaaga ggacacagag gataaactac actgagctcc aatctgctct
     1321 cggggtggcc tgggtgcccc cgcacctgcc gggtcccatg gcgccaagag cagatcccgg
     1381 gggtgctaag aggtgcttag atgagggccg gtgcccgccc agcagggcag ccgcgccgga
     1441 cgaagctcag gacgtcagga gctcaccgtg gccaccgagg cggaaaccaa accgggacct
     1501 tccccaggca cgtgagcacc cagcattagt cctggctgtc ggtgcccctg taccctgtat
     1561 ttattctttt aacaataaca aaagccattt atttattcca cttagaaagg acaccttgtt
     1621 cgggtcacct ctctctggag tgttctgttg cttttcttcc acctgcccct ccctgggatg
     1681 tgtgtgcctc acctggcctt ttcgctgggt cgtgtcggtc gtgtgtcccc acgtgggcac
     1741 aggggtgtct ttgtctgggt cccttgacct acagtttcca gggggctctg ctccgagtgc
     1801 ccgagtgggc gcctgagggg acatcagcct cacgtgcaat atgagtgcct tgggggaccc
     1861 gtctgcacgg gcagtggcag ctccccgtat ctctccaggc agccacccat cgctagggct
     1921 catccgtctt tgcgcgtggt tttatttctt tagtcttctg tgaggttttt cggtgtgggt
     1981 tgggttttgt ttttgcttta ctacctgaga tttgccacgt gcatccccgg aagctctagc
     2041 ttccctgagg accacccgaa ccgagatggg aggatgagtg agtctccatc ccctgagagg
     2101 ctgggggcag ggcggggtgg gggagaccag agcggagttg cgtgtcctag aagccagtgc
     2161 aggtctccgc ttggtgcccc tgtctgggtt catcacggtg ccccagagcc gtgaggtggg
     2221 gcagggggtc ggggcggaca gccagcagga gagggacgca ccctcccatg cacacctccc
     2281 ccatgtagca gaccccagca cctgccggca cagtcaccgt ttcttatgtc ttgaagtcga
     2341 ctcttagaat ctgccttctg ttcatttctg tacaggtaca gtagatgact ttatttgttt
     2401 aaaatgttta atatatatgc atatatattt gtctgtaaga attgtgtttt aaacagctgc
     2461 tgtagggtac cttttaaaaa aaaagaaaaa aatgtcttcc agtggagtat attttttaaa
     2521 gcacaaaatt agtgccaaga ctgggtgagg aatgtaaatt acccccttat tatttggagg
     2581 ttttatgtcc cccagcgggt ggggggaacc taacctgtaa gacttttaaa gattttcctc
     2641 actcctgttt cggggtgggt catgttctga cgaatgttac acacgagagg gtctcactta
     2701 tacagatccc agccttatcg ccttgaccca gccgtctccc acagacgctg gacaaatcac
     2761 cggggtcctt gccatctctc tgcacctccc gcccccacag ctccctaaac cttgacccca
     2821 cccttctttc ctctcagccc ggagccttgt ggcctgtaca gttttgaaac tcccgttctg
     2881 ttttatgatg gttgataata gtcacctaat aaaggaaagt ttattaaaat acacaaaca
//
LOCUS       XM_032609041             580 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cortistatin-like (LOC116741876), mRNA.
ACCESSION   XM_032609041
VERSION     XM_032609041.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 23% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 VOSU01000011.1     8086946-8086950
            6-108               VOSU01000011.1     8088794-8088896
            109-207             VOSU01000011.1     8089320-8089418
            208-209             "NN"               1-2
            210-288             VOSU01000011.1     8089419-8089497
            289-580             VOSU01000011.1     8090523-8090814
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..580
                     /gene="LOC116741876"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 Proteins, and 47% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116741876"
     CDS             1..507
                     /gene="LOC116741876"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: cortistatin-like"
                     /protein_id="XP_032464932.1"
                     /db_xref="GeneID:116741876"
                     /translation="MSLGRPGPEDSGLQAGEAVLGNHHSGRPCLRFGDQWPLVSKEET
                     QVHNTLISGLPSRMSSRRAGEKCPSXPEDAAALLPAAAALPLEGGLAGRDSGHIQEVA
                     EIKKNSLLTFLAWWYEWASQARAVSFLGGKAREVSKRQEVLPLQQSTCRDETPCKNFY
                     WKTFSSCK"
     misc_feature    454..501
                     /gene="LOC116741876"
                     /note="Somatostatin/Cortistatin family; Region:
                     Somatostatin; pfam03002"
                     /db_xref="CDD:367290"
ORIGIN      
        1 atgagtttgg gaaggcctgg gccagaggac agtggcctgc aggccgggga ggcggtgctg
       61 ggaaaccatc actcgggtcg cccttgcctg cggtttggag accagtggcc cctggtctcc
      121 aaagaagaga cccaagtcca caacacactg atttcggggc tgccaagcag gatgagcagc
      181 cgcagggctg gagagaagtg cccgtcanng cctgaggacg ctgccgccct tctgcctgct
      241 gccgctgccc ttcccctgga gggcggcctc gctggccgcg acagtgggca tatacaggaa
      301 gtggcagaaa taaagaaaaa cagcctgttg actttccttg cgtggtggta tgagtgggcc
      361 tcccaggcca gggcagtgtc ctttttagga gggaaagcca gggaggtgtc taaacggcag
      421 gaagtcctgc ccctccaaca gtccacttgc cgagatgaaa cgccctgcaa gaatttctac
      481 tggaagacct tctcctcctg caaataaaac cccacctata aatactcatg caaagaagtg
      541 taaggatgga tctgaataaa aatgtattca tcagccgtga
//
LOCUS       XM_032609055            1779 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus replication protein A2 (RPA2), transcript
            variant X1, mRNA.
ACCESSION   XM_032609055
VERSION     XM_032609055.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1779
                     /gene="RPA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 11 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741880"
     CDS             293..1105
                     /gene="RPA2"
                     /codon_start=1
                     /product="replication protein A 32 kDa subunit isoform X1"
                     /protein_id="XP_032464946.1"
                     /db_xref="GeneID:116741880"
                     /translation="MWTSGFESYSSSSFGGAGGYTQSPGGFGSPTPSQAEKKSRARAQ
                     HIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRNAEKAATNIVYKIDDMTAAPM
                     DVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHIL
                     EVVNAHMMLSKCNSQPSAGKAPVSNPGMGEAGNFGGNIFMPANGLTVAQNQVLNLIKA
                     CPRPEGLNFQDLKNQLQHMTVPSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE"
     misc_feature    365..1093
                     /gene="RPA2"
                     /note="Single-stranded DNA-binding replication protein A
                     (RPA), medium (30 kD) subunit [DNA replication,
                     recombination, and repair]; Region: RFA2; COG5235"
                     /db_xref="CDD:227560"
     misc_feature    509..793
                     /gene="RPA2"
                     /note="A subfamily of OB folds corresponding to the OB
                     fold of the central ssDNA-binding domain (DBD)-D of human
                     RPA2 (also called RPA32). RPA2 is a subunit of Replication
                     protein A (RPA). RPA is a nuclear ssDNA-binding protein
                     (SSB) which appears to be...; Region: RPA2_DBD_D; cd04478"
                     /db_xref="CDD:239924"
     misc_feature    order(530..538,563..574,578..580,599..607,611..613,
                     662..664,683..691,710..718)
                     /gene="RPA2"
                     /note="generic binding surface I [active]"
                     /db_xref="CDD:239924"
     misc_feature    order(533..535,575..577,581..583,665..667,722..727,
                     731..733,743..745,749..763,767..769,773..775,779..784,
                     791..793)
                     /gene="RPA2"
                     /note="trimerization core interface [active]"
                     /db_xref="CDD:239924"
     misc_feature    order(533..535,575..577,581..583,665..667,743..745,
                     749..751,755..760,767..769,779..781,791..793)
                     /gene="RPA2"
                     /note="RPA2 DBD-D/RPA3 interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:239924"
     misc_feature    order(722..727,731..733,752..754,761..763,773..775,
                     782..784,791..793)
                     /gene="RPA2"
                     /note="RPA2 DBD-D/RPA1 DBD-C interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239924"
ORIGIN      
        1 ttgcccttag taacgatggc tgcagaggct tcctaccctc ccgggagcag agtgcgcgtt
       61 ttcaggagcg cggctggaga agacgggaaa aggcgtaaga ttcgtgagca ctgattggct
      121 gaagcgagaa gagttctggc tgctgactgg ctccgtcttc cgcgggaagg agtttgtggc
      181 tcctgcgaaa agtagatata gcggagcggc cgcctcaggg ctcggaggcg gttaggggga
      241 cccaccgtag cggaacgttc tggacctctt tcctgaggga atcgtgacga agatgtggac
      301 cagtggattt gaaagctata gcagttcctc ttttggggga gccggaggct acacacagtc
      361 ccctgggggc tttggatcac cgacaccttc ccaggccgaa aagaaatcta gagcccgagc
      421 tcagcatatt gtaccctgta ccatatctca gctgctttct gctactctgg ttgatgaagt
      481 gttcagaatt ggaaatgttg agatttcaca ggtcactatt gtggggataa tcagaaatgc
      541 agagaaggct gcaaccaaca ttgtttacaa aatagatgac atgacggctg cacccatgga
      601 tgttcgccag tgggttgaca cagatgatgc cagcagtgaa aacactgtgg ttcctccaga
      661 aacatatgtg aaagtggctg gtcatctgag atcttttcag aacaagaaaa gcctggtagc
      721 ctttaagatc atgcccctgg aggatatgaa tgagttcacc acacatattc tggaagtagt
      781 caatgcacac atgatgctca gcaagtgtaa cagccagccc tcagcaggga aagcacctgt
      841 cagcaatcca ggaatgggtg aagctgggaa ctttggtggg aatatcttca tgccagcaaa
      901 tggcctcact gtggcccaga accaggtact gaatttgatt aaggcttgcc caaggcctga
      961 aggattgaac tttcaggatc tcaagaatca gctccaacac atgaccgtac cctccatcaa
     1021 gcaagctgtg gattttctaa gcaacgaggg acacatctat tccactgtgg atgatgatca
     1081 ttttaaatcc acagatgcag aataactgga tcgaattggg tacccgagat attttccagc
     1141 tggacttttt acgcagtctc tcgtctccag ctgtgcatat atttggcagg ttgacttcta
     1201 ggaaataggt ttcatctata aaaggtttca attgacatcc ttttgaaact tactactctt
     1261 ctgtgttttt gaagctcaga gggatatggg caactgacag ggatgtaaac caggatggaa
     1321 tttcttaaag aacttacaaa ttagttacaa tatcaggata aatggaattg gaagagggat
     1381 gctaccaaga gggttgggcg gtattactta aataatactc cggagttttt atgcctaaat
     1441 tgtttcctgt tgagagcagg actagggcct gtcagcagag agctagccac gaaacccact
     1501 aacctctgcc tatttttgtt gcccgctttg gttatgtggt tatgtgttgt tactttcaga
     1561 attgcacttt ctttcacctt gtcataattg ctgcccaaag tgtgttttta taagcatggg
     1621 gttctagaat ggtggcttca tggggcagag agaaagatat gtgttttgta caaaataagt
     1681 acattcatat gtttaataaa atagttctat gattgcagta acttgtaaaa atgttcttat
     1741 tttcttacac tgtaataagt actttatcat ctcagctaa
//
LOCUS       XM_032609058            1665 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus replication protein A2 (RPA2), transcript
            variant X2, mRNA.
ACCESSION   XM_032609058
VERSION     XM_032609058.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1665
                     /gene="RPA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741880"
     CDS             293..991
                     /gene="RPA2"
                     /codon_start=1
                     /product="replication protein A 32 kDa subunit isoform X2"
                     /protein_id="XP_032464949.1"
                     /db_xref="GeneID:116741880"
                     /translation="MWTSGFESYSSSSFGGAGGYTQSPGGFGSPTPSQAEKKSRARAQ
                     HIVPCTISQLLSATLVDEVFRIGNVEISQDASSENTVVPPETYVKVAGHLRSFQNKKS
                     LVAFKIMPLEDMNEFTTHILEVVNAHMMLSKCNSQPSAGKAPVSNPGMGEAGNFGGNI
                     FMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMTVPSIKQAVDFLSNEGHIY
                     STVDDDHFKSTDAE"
     misc_feature    <476..679
                     /gene="RPA2"
                     /note="A subfamily of OB folds corresponding to the OB
                     fold of the central ssDNA-binding domain (DBD)-D of human
                     RPA2 (also called RPA32). RPA2 is a subunit of Replication
                     protein A (RPA). RPA is a nuclear ssDNA-binding protein
                     (SSB) which appears to be...; Region: RPA2_DBD_D; cd04478"
                     /db_xref="CDD:239924"
     misc_feature    order(551..553,608..613,617..619,629..631,635..649,
                     653..655,659..661,665..670,677..679)
                     /gene="RPA2"
                     /note="trimerization core interface [active]"
                     /db_xref="CDD:239924"
     misc_feature    order(608..613,617..619,638..640,647..649,659..661,
                     668..670,677..679)
                     /gene="RPA2"
                     /note="RPA2 DBD-D/RPA1 DBD-C interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239924"
     misc_feature    674..964
                     /gene="RPA2"
                     /note="Replication protein A C terminal; Region: RPA_C;
                     pfam08784"
                     /db_xref="CDD:400920"
ORIGIN      
        1 ttgcccttag taacgatggc tgcagaggct tcctaccctc ccgggagcag agtgcgcgtt
       61 ttcaggagcg cggctggaga agacgggaaa aggcgtaaga ttcgtgagca ctgattggct
      121 gaagcgagaa gagttctggc tgctgactgg ctccgtcttc cgcgggaagg agtttgtggc
      181 tcctgcgaaa agtagatata gcggagcggc cgcctcaggg ctcggaggcg gttaggggga
      241 cccaccgtag cggaacgttc tggacctctt tcctgaggga atcgtgacga agatgtggac
      301 cagtggattt gaaagctata gcagttcctc ttttggggga gccggaggct acacacagtc
      361 ccctgggggc tttggatcac cgacaccttc ccaggccgaa aagaaatcta gagcccgagc
      421 tcagcatatt gtaccctgta ccatatctca gctgctttct gctactctgg ttgatgaagt
      481 gttcagaatt ggaaatgttg agatttcaca ggatgccagc agtgaaaaca ctgtggttcc
      541 tccagaaaca tatgtgaaag tggctggtca tctgagatct tttcagaaca agaaaagcct
      601 ggtagccttt aagatcatgc ccctggagga tatgaatgag ttcaccacac atattctgga
      661 agtagtcaat gcacacatga tgctcagcaa gtgtaacagc cagccctcag cagggaaagc
      721 acctgtcagc aatccaggaa tgggtgaagc tgggaacttt ggtgggaata tcttcatgcc
      781 agcaaatggc ctcactgtgg cccagaacca ggtactgaat ttgattaagg cttgcccaag
      841 gcctgaagga ttgaactttc aggatctcaa gaatcagctc caacacatga ccgtaccctc
      901 catcaagcaa gctgtggatt ttctaagcaa cgagggacac atctattcca ctgtggatga
      961 tgatcatttt aaatccacag atgcagaata actggatcga attgggtacc cgagatattt
     1021 tccagctgga ctttttacgc agtctctcgt ctccagctgt gcatatattt ggcaggttga
     1081 cttctaggaa ataggtttca tctataaaag gtttcaattg acatcctttt gaaacttact
     1141 actcttctgt gtttttgaag ctcagaggga tatgggcaac tgacagggat gtaaaccagg
     1201 atggaatttc ttaaagaact tacaaattag ttacaatatc aggataaatg gaattggaag
     1261 agggatgcta ccaagagggt tgggcggtat tacttaaata atactccgga gtttttatgc
     1321 ctaaattgtt tcctgttgag agcaggacta gggcctgtca gcagagagct agccacgaaa
     1381 cccactaacc tctgcctatt tttgttgccc gctttggtta tgtggttatg tgttgttact
     1441 ttcagaattg cactttcttt caccttgtca taattgctgc ccaaagtgtg tttttataag
     1501 catggggttc tagaatggtg gcttcatggg gcagagagaa agatatgtgt tttgtacaaa
     1561 ataagtacat tcatatgttt aataaaatag ttctatgatt gcagtaactt gtaaaaatgt
     1621 tcttattttc ttacactgta ataagtactt tatcatctca gctaa
//
LOCUS       XM_032609067            2013 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p63 regulated 1 like
            (TPRG1L), transcript variant X1, mRNA.
ACCESSION   XM_032609067
VERSION     XM_032609067.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2013
                     /gene="TPRG1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741896"
     CDS             80..919
                     /gene="TPRG1L"
                     /codon_start=1
                     /product="tumor protein p63-regulated gene 1-like protein
                     isoform X1"
                     /protein_id="XP_032464958.1"
                     /db_xref="GeneID:116741896"
                     /translation="MLQLRDSVDSAGTSPTALLAAGEEVGPGGSVGGGGGGGGGRLGT
                     GTPLRQTLWPLNVHDPTRRARVKEYFVFRQPGTIEQAVEEIRMVVRPVEDGDIQGVWL
                     LTEVDHWNNEKERLVLITDQALLICKYDFISLQCQQVVRVALNAVDTISYGEFQFPPK
                     SLNKREGFGIRIQWDKQSRPSFISRWNPWSTNVPYTTFIEHPMAGVDEKTASLCQLDG
                     FKALLIQAVKKAQKESPLPGQAGGVLVLECPLLIETYVGLMSFINNEAKLGYSMTRGK
                     IGF"
     misc_feature    281..604
                     /gene="TPRG1L"
                     /note="Inositol phosphatase; Region: hSac2; pfam12456"
                     /db_xref="CDD:463592"
ORIGIN      
        1 ggccgagagt ccggcttagg cggcggcggc ggcggccgag tcgggtccgg tccgggttcg
       61 ctcggtggcg ggcgcggcga tgctgcagct gcgggactcg gtggactcgg cgggcacgag
      121 ccccacggcg ctgctggcgg ctggcgagga agtcgggccg ggcggcagcg tcggtggcgg
      181 cggcggcggc ggcggggggc ggctggggac gggcactccg ctgcgacaga cgctgtggcc
      241 gctcaatgtc cacgacccca cgcggcgcgc ccgcgtcaag gagtatttcg tgttccggca
      301 gcctggcacc atcgagcagg cggtggagga gatccgcatg gtggtccggc ccgtggagga
      361 cggcgacatc cagggggtgt ggctgctgac agaggtcgat cactggaaca acgaaaaaga
      421 gcggctggtg ctcatcaccg accaggcgct gctcatctgc aaatacgact tcatcagcct
      481 gcagtgccag caggtggtcc gggtagcctt aaacgcggtg gacaccatct cctacggaga
      541 attccagttt cccccgaaat cgctcaataa gcgggaaggt tttgggattc gcatccagtg
      601 ggacaagcag agccgcccgt ccttcataag cagatggaac ccctggtcca ccaatgtgcc
      661 atacaccacg ttcatagagc acccgatggc cggcgtggac gagaagacag cctctctgtg
      721 ccaactggat ggcttcaaag ctctgttaat ccaagctgtc aaaaaagccc agaaggagag
      781 tcctctgccg ggccaggctg gcggcgtgct ggtcttggag tgccccctcc tcatcgagac
      841 ctatgtgggg ctgatgtcct tcatcaacaa cgaggctaag ctgggctatt ccatgaccag
      901 aggcaaaatc ggcttctagg caccgcacgc gcacgcgggt ctcttccctg ggaaagccag
      961 gccgatggga ccctgggggc atcaggcctc tggccagctc cactgccgct ggcagggtcc
     1021 gagcccctta cctctaggtg tctgggcacg gttagcatag tcagatggac cacatacttt
     1081 agctggatac tgggcatctg gtcacgtgag ctccagacaa agcagaatga atatcgctgt
     1141 caccgtcctg gctggcatct gcttcctaga acctcagttt ctgtgccccc cactgctggg
     1201 gtctccatct ggcttcccgt ggtccctccc accccagccc tggagcatgt taataataaa
     1261 cggcaccaca gctacacaga tcgctgcatc cagggaggcg cctgagactc ggtgcctgtg
     1321 gtggtttaca gttgctgtcc aaatctgcat ttggagattt aatccacttt cttaaagcta
     1381 atttgaaaga agccagcagg cacgagctca tcaagagatg gtctgccgtg tcagctcctg
     1441 aacggacgga cactggcttt tgtggaaata tgtgttcggc ctaaagtcac actttttcta
     1501 aaattaacct atattgtgtt aataatactt atggcatctt cccaggccca gaaaggttta
     1561 cagaaatcat tttaagacaa gtcattagtc tgagaaagtc acattgataa gttctttgca
     1621 cacaattttg tcaactcggt taagtttgta ttgtcatatt catatttaaa aagggaattg
     1681 cttagtttgc ttgtaaagaa tgcacttctg aaaaggaacc acatcagagt ctcctgacgc
     1741 agctcacccc tagacaccag cccgggggga agtcgtcgtt cccgtccacg gctgagcagt
     1801 ctgcctggga gcgtctgttg aggatttaac tgctggcccg ccggttcctc ctcattattt
     1861 ctgactctgg cgtagctgtg gtcagcatgg ccgtgattcg gatgcagggt cctgtccaca
     1921 tcgaaaggct gcctcacaac tccgcctggg tcctgagcct ttgctttcgg tcttgtagta
     1981 aagacattta aaatctgagt tgaaacatta aaa
//
LOCUS       XM_032609077            2008 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor protein p63 regulated 1 like
            (TPRG1L), transcript variant X2, mRNA.
ACCESSION   XM_032609077
VERSION     XM_032609077.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2008
                     /gene="TPRG1L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741896"
     CDS             78..914
                     /gene="TPRG1L"
                     /codon_start=1
                     /product="tumor protein p63-regulated gene 1-like protein
                     isoform X2"
                     /protein_id="XP_032464968.1"
                     /db_xref="GeneID:116741896"
                     /translation="MLQLRDSVDSAGTSPTALLAAGEEVGPGGSVGGGGGGGGGRLGT
                     GTPLRQTLWPLNVHDPTRRARVKEYFVFRPGTIEQAVEEIRMVVRPVEDGDIQGVWLL
                     TEVDHWNNEKERLVLITDQALLICKYDFISLQCQQVVRVALNAVDTISYGEFQFPPKS
                     LNKREGFGIRIQWDKQSRPSFISRWNPWSTNVPYTTFIEHPMAGVDEKTASLCQLDGF
                     KALLIQAVKKAQKESPLPGQAGGVLVLECPLLIETYVGLMSFINNEAKLGYSMTRGKI
                     GF"
     misc_feature    279..599
                     /gene="TPRG1L"
                     /note="Inositol phosphatase; Region: hSac2; pfam12456"
                     /db_xref="CDD:463592"
ORIGIN      
        1 ccgagagtcc ggcttaggcg gcggcggcgg cggccgagtc gggtccggtc cgggttcgct
       61 cggtggcggg cgcggcgatg ctgcagctgc gggactcggt ggactcggcg ggcacgagcc
      121 ccacggcgct gctggcggct ggcgaggaag tcgggccggg cggcagcgtc ggtggcggcg
      181 gcggcggcgg cggggggcgg ctggggacgg gcactccgct gcgacagacg ctgtggccgc
      241 tcaatgtcca cgaccccacg cggcgcgccc gcgtcaagga gtatttcgtg ttccggcctg
      301 gcaccatcga gcaggcggtg gaggagatcc gcatggtggt ccggcccgtg gaggacggcg
      361 acatccaggg ggtgtggctg ctgacagagg tcgatcactg gaacaacgaa aaagagcggc
      421 tggtgctcat caccgaccag gcgctgctca tctgcaaata cgacttcatc agcctgcagt
      481 gccagcaggt ggtccgggta gccttaaacg cggtggacac catctcctac ggagaattcc
      541 agtttccccc gaaatcgctc aataagcggg aaggttttgg gattcgcatc cagtgggaca
      601 agcagagccg cccgtccttc ataagcagat ggaacccctg gtccaccaat gtgccataca
      661 ccacgttcat agagcacccg atggccggcg tggacgagaa gacagcctct ctgtgccaac
      721 tggatggctt caaagctctg ttaatccaag ctgtcaaaaa agcccagaag gagagtcctc
      781 tgccgggcca ggctggcggc gtgctggtct tggagtgccc cctcctcatc gagacctatg
      841 tggggctgat gtccttcatc aacaacgagg ctaagctggg ctattccatg accagaggca
      901 aaatcggctt ctaggcaccg cacgcgcacg cgggtctctt ccctgggaaa gccaggccga
      961 tgggaccctg ggggcatcag gcctctggcc agctccactg ccgctggcag ggtccgagcc
     1021 ccttacctct aggtgtctgg gcacggttag catagtcaga tggaccacat actttagctg
     1081 gatactgggc atctggtcac gtgagctcca gacaaagcag aatgaatatc gctgtcaccg
     1141 tcctggctgg catctgcttc ctagaacctc agtttctgtg ccccccactg ctggggtctc
     1201 catctggctt cccgtggtcc ctcccacccc agccctggag catgttaata ataaacggca
     1261 ccacagctac acagatcgct gcatccaggg aggcgcctga gactcggtgc ctgtggtggt
     1321 ttacagttgc tgtccaaatc tgcatttgga gatttaatcc actttcttaa agctaatttg
     1381 aaagaagcca gcaggcacga gctcatcaag agatggtctg ccgtgtcagc tcctgaacgg
     1441 acggacactg gcttttgtgg aaatatgtgt tcggcctaaa gtcacacttt ttctaaaatt
     1501 aacctatatt gtgttaataa tacttatggc atcttcccag gcccagaaag gtttacagaa
     1561 atcattttaa gacaagtcat tagtctgaga aagtcacatt gataagttct ttgcacacaa
     1621 ttttgtcaac tcggttaagt ttgtattgtc atattcatat ttaaaaaggg aattgcttag
     1681 tttgcttgta aagaatgcac ttctgaaaag gaaccacatc agagtctcct gacgcagctc
     1741 acccctagac accagcccgg ggggaagtcg tcgttcccgt ccacggctga gcagtctgcc
     1801 tgggagcgtc tgttgaggat ttaactgctg gcccgccggt tcctcctcat tatttctgac
     1861 tctggcgtag ctgtggtcag catggccgtg attcggatgc agggtcctgt ccacatcgaa
     1921 aggctgcctc acaactccgc ctgggtcctg agcctttgct ttcggtcttg tagtaaagac
     1981 atttaaaatc tgagttgaaa cattaaaa
//
LOCUS       XM_032609086            5099 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorting nexin 7 (SNX7), transcript
            variant X1, mRNA.
ACCESSION   XM_032609086
VERSION     XM_032609086.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5099
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5099
                     /gene="SNX7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     38% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741909"
     CDS             25..1452
                     /gene="SNX7"
                     /codon_start=1
                     /product="sorting nexin-7 isoform X1"
                     /protein_id="XP_032464977.1"
                     /db_xref="GeneID:116741909"
                     /translation="MEGECRAPQARSSGLPAGGGGGESPGVDGPLPGSSGSSALLQAE
                     VLDLDEDEDDLEVFSKDASLMDMNSFSPVMPTSPLSMINQVKFEDEPDLKDLFITVDE
                     PESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKERLEEAHPTLIIPPL
                     PEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAWELSSH
                     KKQGPGLLSRMGQTVRAVALSMRGVKSRPEEFMEMNNFIEIFSQKINLIDKISQRICK
                     EEREYFDEMKEYGPIHILWSASEEDLADTLKGVASCIDRCCKATEKRMSGLSEALLPV
                     VHEYVLYSEMLMGVMKRRDQIQSELDSKVEALTSKKADTDLLTEEIGKLEDKVECANN
                     ALKADWERWKQNMQNDIKSAFTDMAEENIHSYEQVISDMWYCFIFKMLSSLTFYMSCV
                     ERVCSGTKCHIQKPLQWLSASGVAS"
     misc_feature    310..657
                     /gene="SNX7"
                     /note="The phosphoinositide binding Phox Homology domain
                     of Sorting Nexin 7; Region: PX_SNX7; cd07284"
                     /db_xref="CDD:132817"
     misc_feature    order(433..441,511..516,565..567)
                     /gene="SNX7"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:132817"
     misc_feature    607..1332
                     /gene="SNX7"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
                     Nexin 7; Region: BAR_SNX7; cd07666"
                     /db_xref="CDD:153350"
     misc_feature    order(790..792,799..804,811..816,820..825,832..834,
                     841..846,853..855,874..879,883..888,895..897,904..909,
                     916..921,961..963,1219..1221,1228..1233,1237..1245,
                     1252..1254,1261..1266,1270..1278,1282..1287,1294..1299,
                     1303..1308,1318..1323,1327..1332)
                     /gene="SNX7"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153350"
ORIGIN      
        1 gccggcgggg cgcgcactct cgggatggag ggcgagtgcc gggcacctca ggcgcgctcc
       61 tcgggcctcc cggctggggg cggcggcggg gagagcccgg gggtcgacgg ccccctcccc
      121 ggcagcagcg gctcctccgc cctcctgcag gccgaggtgc tggatctgga cgaagacgag
      181 gacgacctgg aggtgttcag taaggatgcc tcattgatgg acatgaattc cttcagccct
      241 gtgatgccaa catccccttt atcaatgata aaccaagtca agtttgaaga tgagccagat
      301 ttgaaagatc ttttcattac agttgatgaa cctgaaagcc atgttactac aattgaaaca
      361 ttcattactt ataggattat tactaagacg tctcgtgggg aatttgactc cagtgaattt
      421 gaagttagga gacgttatca agatttcctt tggttgaaag aaagacttga agaagcacac
      481 cccactctga ttattccacc attgccagaa aagtttatag tgaaaggaat ggtggaacgc
      541 tttaacgatg acttcattga gacacgcagg aaggcattgc ataaattttt gaaccgaatt
      601 gctgatcatc caactctaac atttaatgaa gactttaaag tttttcttac tgcacaagct
      661 tgggaactct cttctcacaa gaagcaaggg cctggattac tcagcaggat ggggcagacg
      721 gtcagagcgg ttgcattatc aatgagagga gttaaaagcc gccccgagga gttcatggaa
      781 atgaataact ttattgaaat atttagccag aaaataaatt tgatagataa aatatctcag
      841 agaatttgca aggaagaaag ggaatatttt gatgaaatga aagaatatgg cccaattcat
      901 attctgtggt cagcatcaga agaagatctg gctgatactc taaaaggtgt tgccagctgc
      961 attgacagat gctgtaaggc cactgaaaaa cggatgtctg gactctcaga ggccctgctt
     1021 cctgtcgtac atgagtatgt gctttatagt gaaatgttaa tgggtgtcat gaaaagaaga
     1081 gatcaaatac agtcagaact ggattccaaa gttgaagctt tgacctctaa aaaggcagat
     1141 actgatctgc ttacggaaga gattggaaaa ctggaagata aagtggagtg cgctaataat
     1201 gccttgaaag cagattggga aagatggaaa caaaacatgc aaaatgatat caagtcagca
     1261 tttacagata tggctgagga gaatatccac tcttatgaac aggtaattag tgatatgtgg
     1321 tattgcttca tttttaaaat gttatcctct cttactttct atatgtcttg tgttgaaaga
     1381 gtctgttcag gaaccaagtg tcacattcag aagcctcttc agtggctcag tgccagtgga
     1441 gttgccagtt aatatagtaa cactgaaccc acccactgac acaaatgtgt atatgtggag
     1501 ggagggtgat aagttttcct tcctacacag catgcccaag tacctaattt gagctgagct
     1561 tgatgtgaga aagaattatg ctaccatttt attgtgtctg ttttcccctc agtttcttgt
     1621 tttggaagga tttgaattct tcaaaagcac ttgatcatgc ttcctaatga ttctcctatc
     1681 ttatttcctt ttcctctctt tttcttgtat taaaaagggt ttgcaaaatg aggaaaggac
     1741 caaaggtttg aaaattagtt cagggcttat acgttatgtc cctgccaccc ctaccatgcc
     1801 ttctgtagct attcaaaaaa atcaaaaaag gagcattagt tcagtttagt tttagttcag
     1861 ttgttttttg tttgtttgtt tgttaattca ggaaagagcc tcatcaacat ttttcttttc
     1921 aaatgattac cttttttgaa caactaacaa ttccgcaaag cagttattat tttaaatgaa
     1981 ttttatgcta tcactttctt catctagcat attctgagag ttttatagtt ttaattctta
     2041 cattgaggta tctgacccat tttgagttaa tttttttttt aatatagtat gaggtagggg
     2101 tacaacttca ttctttttct ttttcttttc ttttttttta atatttactt atttattttg
     2161 gctgcgctgg gtcttggttg cggcatgcgg actcagttgc aagcatacac gcggaatcta
     2221 gttccccgac caggggtcgg tgacggggcc cctgcactga gagtgcggag tcttacccac
     2281 tggaccacca gggaagttcc cattcatcta gcgtattctg aacatacttt tcctggaagg
     2341 tatattttaa acatacatct ttaaccttat ctctgactga gttaatgacg atacaaaatt
     2401 gatacattaa gagaattatt ttatcctttg tagtctatag tgcttgctag tttaaaggta
     2461 ctttaaacta aaatatttta tattttgcaa gattatctaa ctgatactga tattttcatt
     2521 caacaagaat tacttgagcc cctactacca ccagacactg tgctgggccc tggagagacc
     2581 acagtatgca ggacaaacac ggtccctttc tcatgtagtt acagtcaata agagaaacag
     2641 tcaattaaaa taaaacgtta tgataataaa gtataataag ttccaggata gaaagacatt
     2701 gcagggaaag aggaggattc ctcagaggat gtgtttaagc tgagacctta atgaatgatg
     2761 aatgagaggt agccagataa agatgtgagt aagagagttc caggcagaga aaagacgaga
     2821 agtgagagag tacatgttca aattactgag gttctctttg aaggatggtg gagtggaggt
     2881 gatgttgagt tcaaaaagga agcttgtaga ggaggaaaaa ttttcctcaa tcctcttagg
     2941 tttcctggct gggtctgaaa atgaaactga caaagataaa ttaacaggaa aaatgtatat
     3001 atgttgattt aatgtaagtt ctttgtggta caggagcctt catgagcaaa tctagaccag
     3061 aagaaacaga tctgagtatt tctacgctaa gtttgatgaa gagtgggctg tcatgtagaa
     3121 gtagggtagg ttaaggagta agagttaagt gaaataaact ggagggaatt tagcaagtcc
     3181 tttttgttag gagtcttctc agtgtccctt tttctttgga ggtaaagatg cttctttttt
     3241 cctctgggca taaggaggcc acctcttgta tgagggtttt atgacctgct tcgtgagata
     3301 agggttagaa gaaggtcaaa gtgacctttc tgcttctgcc atattctcaa actcattcat
     3361 cttaatatgc caacatgtca tattttacat tagtatgtcc tgaacgctat taggctgaag
     3421 agggccttat aagctttgtc ttttattttt cattctaagg gaaatgggga atgccattga
     3481 agacttttca gcagggaaga ggcaatatct attgcacttg ccttttagaa agatcacact
     3541 ggctatatgg gtcagagtgg aacaaaacta aacatgttga gcctagttag aaaacgtagc
     3601 aacaaagaca gagatgtgaa ctgacataga ggtctcatgg cagtgggcta gagattagtg
     3661 gacagattca agtgattttc tttttagcag gtgggattgg aaagatcatt ttctacctct
     3721 cctatttttt tattctacat taacaacctt aagtaaattc aagtctctaa aaggaatttc
     3781 tcgtaaatct cagattttga aatgatttaa aatatttctg ttggataaag cgcatttatc
     3841 aacataggct ttttttacca cttaactctt taaatccaca gaaataactt tatctctcct
     3901 ttacaataga acctgtccac actgacctta tagtagtgtt atgacaatta agcgaaataa
     3961 tttttaagaa aatgccttga aaattaagat atacaatata ctataagtga tcgtgattat
     4021 aaaacataag tatattaagt tataaaagtc atgtgacaaa tgcacctact atgttttcct
     4081 ttcaatgata aagtctgcaa aacttttcta agtttgcttt tttatttttt taagagaaaa
     4141 tgttcatggc aattccattg aactccaaat gaaatgtttg agttttgact gtacctgtca
     4201 cataaataca tgtttttgtc acacccatag gttgcactca gtttatacaa aatacagttt
     4261 tattagaaat agttaaatta gcatcactgt gccatattgc catattgcaa actttgttct
     4321 tcacagcagt ttatatcagt atgtttttca ccctttcctc caaatgaatt atatttctac
     4381 atgttgctaa aattatatca agtgtactgc atcttagatg tatatatttg gaggaatctc
     4441 tggttttctt tattataact tcacaagatc cctacagctc cagttattta ttgttttttt
     4501 tcctaagtga ataactctta actgatttga gacatcagtc caagcataat caggaaattg
     4561 gggcccttat ataatcacgg cttcctaact aacacacaaa ctgtgtggcc tgaaacagca
     4621 acagtctgct gactgttaac ttcagaatat ctcagatata caaggaagtg aaacattgca
     4681 gaatctttcc agtccctttt taatttaatc atattattat ggaaatactt ctgttttcat
     4741 caacatttgt aaaaataaat caccaaaggg gtttgttcct agtgtgatag aagaaatggg
     4801 gtataaacat ttgcctttgg acttttatga agtaaaatgg tcacagtttg tttacaactt
     4861 aatatttaaa tattaaaatg aaagaggaaa atcagtttgt aaatatgaga tataggtctg
     4921 tatcagaaac caattattgt catattgaaa tattatactt agatgtgtga atttacttgg
     4981 agacagttga caccgaatat aaaacaggta tctccaaata aactctgagt aggtgaaatg
     5041 aagctattcc caattttgtt ctatatgacc aataactaag aataaatttg agtctttat
//
LOCUS       XM_032609093            1775 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorting nexin 7 (SNX7), transcript
            variant X2, mRNA.
ACCESSION   XM_032609093
VERSION     XM_032609093.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1775
                     /gene="SNX7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 7 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741909"
     CDS             42..1397
                     /gene="SNX7"
                     /codon_start=1
                     /product="sorting nexin-7 isoform X2"
                     /protein_id="XP_032464984.1"
                     /db_xref="GeneID:116741909"
                     /translation="MEGECRAPQARSSGLPAGGGGGESPGVDGPLPGSSGSSALLQAE
                     VLDLDEDEDDLEVFSKDASLMDMNSFSPVMPTSPLSMINQVKFEDEPDLKDLFITVDE
                     PESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKERLEEAHPTLIIPPL
                     PEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAWELSSH
                     KKQGPGLLSRMGQTVRAVALSMRGVKSRPEEFMEMNNFIEIFSQKINLIDKISQRICK
                     EEREYFDEMKEYGPIHILWSASEEDLADTLKGVASCIDRCCKATEKRMSGLSEALLPV
                     VHEYVLYSEMLMGVMKRRDQIQSELDSKVEALTSKKADTDLLTEEIGKLEDKVECANN
                     ALKADWERWKQNMQNDIKSAFTDMAEENIHSYEQCLATWESFLTSQTDLHLEEASEDK
                     S"
     misc_feature    327..674
                     /gene="SNX7"
                     /note="The phosphoinositide binding Phox Homology domain
                     of Sorting Nexin 7; Region: PX_SNX7; cd07284"
                     /db_xref="CDD:132817"
     misc_feature    order(450..458,528..533,582..584)
                     /gene="SNX7"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:132817"
     misc_feature    624..1352
                     /gene="SNX7"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
                     Nexin 7; Region: BAR_SNX7; cd07666"
                     /db_xref="CDD:153350"
     misc_feature    order(807..809,816..821,828..833,837..842,849..851,
                     858..863,870..872,891..896,900..905,912..914,921..926,
                     933..938,978..980,1236..1238,1245..1250,1254..1262,
                     1269..1271,1278..1283,1287..1295,1299..1304,1311..1316,
                     1320..1325,1332..1337,1341..1346)
                     /gene="SNX7"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153350"
ORIGIN      
        1 ccgggctggc ggcggcggcc ggcggggcgc gcactctcgg gatggagggc gagtgccggg
       61 cacctcaggc gcgctcctcg ggcctcccgg ctgggggcgg cggcggggag agcccggggg
      121 tcgacggccc cctccccggc agcagcggct cctccgccct cctgcaggcc gaggtgctgg
      181 atctggacga agacgaggac gacctggagg tgttcagtaa ggatgcctca ttgatggaca
      241 tgaattcctt cagccctgtg atgccaacat cccctttatc aatgataaac caagtcaagt
      301 ttgaagatga gccagatttg aaagatcttt tcattacagt tgatgaacct gaaagccatg
      361 ttactacaat tgaaacattc attacttata ggattattac taagacgtct cgtggggaat
      421 ttgactccag tgaatttgaa gttaggagac gttatcaaga tttcctttgg ttgaaagaaa
      481 gacttgaaga agcacacccc actctgatta ttccaccatt gccagaaaag tttatagtga
      541 aaggaatggt ggaacgcttt aacgatgact tcattgagac acgcaggaag gcattgcata
      601 aatttttgaa ccgaattgct gatcatccaa ctctaacatt taatgaagac tttaaagttt
      661 ttcttactgc acaagcttgg gaactctctt ctcacaagaa gcaagggcct ggattactca
      721 gcaggatggg gcagacggtc agagcggttg cattatcaat gagaggagtt aaaagccgcc
      781 ccgaggagtt catggaaatg aataacttta ttgaaatatt tagccagaaa ataaatttga
      841 tagataaaat atctcagaga atttgcaagg aagaaaggga atattttgat gaaatgaaag
      901 aatatggccc aattcatatt ctgtggtcag catcagaaga agatctggct gatactctaa
      961 aaggtgttgc cagctgcatt gacagatgct gtaaggccac tgaaaaacgg atgtctggac
     1021 tctcagaggc cctgcttcct gtcgtacatg agtatgtgct ttatagtgaa atgttaatgg
     1081 gtgtcatgaa aagaagagat caaatacagt cagaactgga ttccaaagtt gaagctttga
     1141 cctctaaaaa ggcagatact gatctgctta cggaagagat tggaaaactg gaagataaag
     1201 tggagtgcgc taataatgcc ttgaaagcag attgggaaag atggaaacaa aacatgcaaa
     1261 atgatatcaa gtcagcattt acagatatgg ctgaggagaa tatccactct tatgaacagt
     1321 gccttgctac atgggaatcc ttccttacat cacagacaga tctccacttg gaagaagcct
     1381 ctgaagataa atcgtaatcg cattgaagac ttctctgtga tctttgggag ataaccaagg
     1441 ttaaccaaag ttattctttc tggatgggct gtgtcctttc taaagtggac gaaaagtgtt
     1501 tcacattatc tggaaaacca acaacttaaa actcaggtgt tccagagcat tcatatgaat
     1561 ttggatatat atatatatat atatatatat atatatatat atatatatat atatacatat
     1621 atatacatat aaatatttag cttagtttta actatgttct taaatttgta taccaataat
     1681 tatacattaa aaagtttttt tcttaaatat ttgtctgtgg aacatgtcat tttaaatata
     1741 atgtaaagac tcagttttaa taaaaagttt aatat
//
LOCUS       XM_032609096            1572 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorting nexin 7 (SNX7), transcript
            variant X3, mRNA.
ACCESSION   XM_032609096
VERSION     XM_032609096.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1572
                     /gene="SNX7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741909"
     CDS             25..1227
                     /gene="SNX7"
                     /codon_start=1
                     /product="sorting nexin-7 isoform X3"
                     /protein_id="XP_032464987.1"
                     /db_xref="GeneID:116741909"
                     /translation="MEGECRAPQARSSGLPAGGGGGESPGVDGPLPGSSGSSALLQAE
                     VLDLDEDEDDLEVFSKDASLMDMNSFSPVMPTSPLSMINQVKFEDEPDLKDLFITVDE
                     PESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKERLEEAHPTLIIPPL
                     PEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAWELSSH
                     KKQGPGLLSRMGQTVRAVALSMRGVKSRPEEFMEMNNFIEIFSQKINLIDKISQRICK
                     EEREYFDEMKEYGPIHILWSASEEDLADTLKGVASCIDRCCKATEKRMSGLSEALLPV
                     VHEYVLYSEMLMGVMKRRDQIQSELDSKVEALTSKKADTDLCLATWESFLTSQTDLHL
                     EEASEDKS"
     misc_feature    310..657
                     /gene="SNX7"
                     /note="The phosphoinositide binding Phox Homology domain
                     of Sorting Nexin 7; Region: PX_SNX7; cd07284"
                     /db_xref="CDD:132817"
     misc_feature    order(433..441,511..516,565..567)
                     /gene="SNX7"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:132817"
     misc_feature    607..1182
                     /gene="SNX7"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; Region: BAR; cl12013"
                     /db_xref="CDD:472257"
ORIGIN      
        1 gccggcgggg cgcgcactct cgggatggag ggcgagtgcc gggcacctca ggcgcgctcc
       61 tcgggcctcc cggctggggg cggcggcggg gagagcccgg gggtcgacgg ccccctcccc
      121 ggcagcagcg gctcctccgc cctcctgcag gccgaggtgc tggatctgga cgaagacgag
      181 gacgacctgg aggtgttcag taaggatgcc tcattgatgg acatgaattc cttcagccct
      241 gtgatgccaa catccccttt atcaatgata aaccaagtca agtttgaaga tgagccagat
      301 ttgaaagatc ttttcattac agttgatgaa cctgaaagcc atgttactac aattgaaaca
      361 ttcattactt ataggattat tactaagacg tctcgtgggg aatttgactc cagtgaattt
      421 gaagttagga gacgttatca agatttcctt tggttgaaag aaagacttga agaagcacac
      481 cccactctga ttattccacc attgccagaa aagtttatag tgaaaggaat ggtggaacgc
      541 tttaacgatg acttcattga gacacgcagg aaggcattgc ataaattttt gaaccgaatt
      601 gctgatcatc caactctaac atttaatgaa gactttaaag tttttcttac tgcacaagct
      661 tgggaactct cttctcacaa gaagcaaggg cctggattac tcagcaggat ggggcagacg
      721 gtcagagcgg ttgcattatc aatgagagga gttaaaagcc gccccgagga gttcatggaa
      781 atgaataact ttattgaaat atttagccag aaaataaatt tgatagataa aatatctcag
      841 agaatttgca aggaagaaag ggaatatttt gatgaaatga aagaatatgg cccaattcat
      901 attctgtggt cagcatcaga agaagatctg gctgatactc taaaaggtgt tgccagctgc
      961 attgacagat gctgtaaggc cactgaaaaa cggatgtctg gactctcaga ggccctgctt
     1021 cctgtcgtac atgagtatgt gctttatagt gaaatgttaa tgggtgtcat gaaaagaaga
     1081 gatcaaatac agtcagaact ggattccaaa gttgaagctt tgacctctaa aaaggcagat
     1141 actgatctgt gccttgctac atgggaatcc ttccttacat cacagacaga tctccacttg
     1201 gaagaagcct ctgaagataa atcgtaatcg cattgaagac ttctctgtga tctttgggag
     1261 ataaccaagg ttaaccaaag ttattctttc tggatgggct gtgtcctttc taaagtggac
     1321 gaaaagtgtt tcacattatc tggaaaacca acaacttaaa actcaggtgt tccagagcat
     1381 tcatatgaat ttggatatat atatatatat atatatatat atatatatat atatatatat
     1441 atatacatat atatacatat aaatatttag cttagtttta actatgttct taaatttgta
     1501 taccaataat tatacattaa aaagtttttt tcttaaatat ttgtctgtgg aacatgtcat
     1561 tttaaatata at
//
LOCUS       XM_032609105             870 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLAM family member 9 (SLAMF9), mRNA.
ACCESSION   XM_032609105
VERSION     XM_032609105.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                VOSU01000011.1     117268879-117268924 c
            47-81               VOSU01000011.1     117268405-117268439 c
            82-123              VOSU01000011.1     117268362-117268403 c
            124-124             "N"                1-1
            125-391             VOSU01000011.1     117268095-117268361 c
            392-453             VOSU01000011.1     117266984-117267045 c
            454-664             VOSU01000011.1     117266772-117266982 c
            665-870             VOSU01000011.1     117266161-117266366 c
FEATURES             Location/Qualifiers
     source          1..870
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..870
                     /gene="SLAMF9"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:116741930"
     CDS             1..870
                     /gene="SLAMF9"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons; substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:253..255,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: SLAM family member 9"
                     /protein_id="XP_032464996.1"
                     /db_xref="GeneID:116741930"
                     /translation="MGALPWLLLLLLFQEGSRRGLWRWCGSEEVVAVLQESISLPXEI
                     PLDEEVENIIWSSHISLATVMPGEEGHPATIMVTNPRYEGXVSFLEPTYYLHISNLSW
                     ENSGPYQAQVNLRASQLSTMQYYNLCVYRWLSQPHMTVNFEISGKEGTVCVLDMIRRE
                     AGLDVTYCWISWEDGADTAHEGSVLSTSWRPGKKAVSYTCRANNPISDISSHLIPAGP
                     FWADIGYPLEKSSTFFCLLAKALLILLLFVVLAVGLWLIRVQTRCKTPRMKKLRRNRM
                     RLRKKGKPGPSLA"
     misc_feature    85..390
                     /gene="SLAMF9"
                     /note="N-terminal immunoglobulin (Ig)-like domain of the
                     signaling lymphocyte activation molecule (SLAM) family;
                     Region: Ig_SLAM-like_N; cd16842"
                     /db_xref="CDD:409517"
     misc_feature    85..99
                     /gene="SLAMF9"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409517"
     misc_feature    106..126
                     /gene="SLAMF9"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409517"
     misc_feature    order(154..156,160..162,325..327,331..333,337..339)
                     /gene="SLAMF9"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:409517"
     misc_feature    178..195
                     /gene="SLAMF9"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409517"
     misc_feature    214..234
                     /gene="SLAMF9"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409517"
     misc_feature    253..270
                     /gene="SLAMF9"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409517"
     misc_feature    277..294
                     /gene="SLAMF9"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409517"
     misc_feature    316..339
                     /gene="SLAMF9"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409517"
     misc_feature    358..390
                     /gene="SLAMF9"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409517"
ORIGIN      
        1 atgggagccc ttccatggct gctcctcctc ttgctgttcc aggaaggcag ccgaagggga
       61 ctctggagat ggtgtggatc cgaggaagtt gttgcagtcc ttcaggagtc catcagcctc
      121 cccncggaaa taccattgga tgaagaggtt gagaacatca tctggtcctc ccacataagc
      181 cttgccactg tgatgccagg ggaagaggga catccggcta ccatcatggt gaccaaccct
      241 cgctatgagg gctgagtgag cttcctggag cccacctact acttgcacat cagcaatctg
      301 agttgggaga actcggggcc ttaccaagct caagtcaacc tgagggcgtc ccagctctcc
      361 accatgcagt actacaatct ttgtgtgtac cgatggctgt cacagcctca catgactgtg
      421 aactttgaga tctctgggaa agaaggtact gtatgtgtcc ttgacatgat ccgtagggag
      481 gcaggcctgg atgtgaccta ctgctggata tcctgggagg acggtgctga cacagcccac
      541 gaaggctctg tccttagcac atcctggagg cctgggaaaa aggccgtctc ctacacatgc
      601 agggcaaaca accccatcag cgacatcagt tctcatctca tccctgctgg gcccttctgg
      661 gcagatattg gctacccttt ggagaagtct tctactttct tctgtctcct ggccaaggca
      721 ttactcatcc tcttgctttt tgtagttctt gctgtggggc tctggctcat ccgagtccag
      781 acaagatgca aaacgccaag aatgaagaaa ctcaggagaa acagaatgag actgagaaag
      841 aaggggaagc ctggccccag cctggcctga
//
LOCUS       XM_032609119            1305 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus beclin 2 (BECN2), mRNA.
ACCESSION   XM_032609119
VERSION     XM_032609119.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1305
                     /gene="BECN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins"
                     /db_xref="GeneID:116741937"
     CDS             7..1305
                     /gene="BECN2"
                     /codon_start=1
                     /product="beclin-2"
                     /protein_id="XP_032465010.1"
                     /db_xref="GeneID:116741937"
                     /translation="MSSLRFICQRCSQPLQLNQSMETSQEPEALMLISAQGEPGETQE
                     GGPPSREEADFENLQEGASYRTLPGLSGGRMSWDNPDSFTLLGNLGSLRSLSSIQKAA
                     SDMFDILSGETDVDHPMCEDCTDNLLEQLDVQLTITESEIQSYKRCLETRELISEERE
                     TLQEKLKGLELEETRLVQELEEVEKNQQRAAADLEAAQAETEMLDQQEKQYQKDYSKL
                     KWQQLELHDELSSVEKRLWYAQIQWHQLEKTSVFNAAFEIWHDGPLTTINNFRLGCLP
                     TVPVCWNEINIAWGQTALLLLALSNTIGLEFQRYRLIPCGNHSYLKSLTDDCIELPLF
                     SNGKRNAFLHNKFDQAMMAFLDCMQQFKELAEKGGSGLCLPYKIHVKKGLMEDPGSSG
                     GFYSIRTHLNTEEEWTKALKLMLINFKCSLTWVSLRYCQK"
     misc_feature    358..735
                     /gene="BECN2"
                     /note="Apg6 coiled-coil region; Region: APG6_N; pfam17675"
                     /db_xref="CDD:465452"
     misc_feature    751..1284
                     /gene="BECN2"
                     /note="Apg6 BARA domain; Region: APG6; pfam04111"
                     /db_xref="CDD:461178"
ORIGIN      
        1 tccaccatgt cctctctccg cttcatttgc caacgctgca gccagcccct gcaactgaat
       61 cagtccatgg agacctccca agaacctgaa gctttgatgc tcatctcagc tcagggggag
      121 ccaggagaaa cccaggaggg aggccctcct tccagggagg aggcagattt tgaaaatcta
      181 caggaaggtg cctcttacag gacccttcct ggcctctctg gtggcagaat gtcctgggac
      241 aatcctgaca gcttcaccct gcttgggaat ttgggctccc tgagaagtct cagtagcatc
      301 cagaaggctg caagcgacat gtttgacatc ctttccggtg aaacagatgt ggaccacccc
      361 atgtgtgagg actgtactga caatctttta gagcaactgg acgtccaact caccatcaca
      421 gaatctgaga ttcagagcta caaacgctgt ttggagacca gggagttgat aagtgaggag
      481 agggagacgc tgcaggagaa gctgaagggc ctggagctgg aggaaacgag gctggtccag
      541 gagctggagg aggtggaaaa gaaccaacaa agagcagcag cagatctcga ggcagcccag
      601 gcagagactg agatgctgga ccagcaagaa aagcagtacc agaaggacta cagtaaattg
      661 aaatggcaac aactagaact acatgacgag ctgagtagtg tggagaagcg gctatggtac
      721 gcccagatcc agtggcacca gctggagaaa accagtgtct ttaatgccgc atttgagatc
      781 tggcatgacg gccccttaac taccatcaat aacttcagat tgggctgcct ccccactgtc
      841 cctgtgtgct ggaatgagat taacatagcc tggggacaga cagccttgct gctccttgct
      901 ctgtccaata caattggact ggagtttcag aggtaccgac tcatcccctg tggaaaccat
      961 tcctatctga agtctttaac agatgactgc attgagctgc cattgttctc taatgggaag
     1021 cggaatgctt tcttgcataa caaatttgac caggctatga tggctttcct ggactgcatg
     1081 cagcagttca aggaactggc tgagaaaggt gggtcaggtc tctgtttgcc ctacaagatt
     1141 catgtgaaga aaggcctgat ggaagacccc ggaagcagtg gtggattcta ttccatcaga
     1201 acccacttga acacagagga ggagtggaca aaagcactca agcttatgct tataaatttt
     1261 aagtgtagtc tcacttgggt ctccttaaga tattgtcaaa aataa
//
LOCUS       XM_032609128            5538 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centrosomal protein 104 (CEP104),
            transcript variant X1, mRNA.
ACCESSION   XM_032609128
VERSION     XM_032609128.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5538
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5538
                     /gene="CEP104"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741942"
     CDS             198..2975
                     /gene="CEP104"
                     /codon_start=1
                     /product="centrosomal protein of 104 kDa isoform X1"
                     /protein_id="XP_032465019.1"
                     /db_xref="GeneID:116741942"
                     /translation="MPHKLGFVVVSSSGHEDGFSARELMIHAPTVSGWRSPRFCQFPQ
                     EIVLQMVERCRIRKLQLLAHQYMISSKIEFYVSESLPEYFAPYQAERFRRLGYVSLCD
                     NEKTGCKARELKSVYVDAVGQFLKLIFHQNHINKYNVYNQVALVAINIIGDPADFSDE
                     SNITSREKLIDHYLGHNTEDPALEGTCSGKSDYISPLDDLAFDMYQDPEVAQIIRRLD
                     ERKREAAQRERYDDAKTLKQAIADLQKVGERLGRYEVEKRRAVEKEDYDLAKEKKQQM
                     ARYRSQVYGRLQLHGLVDAELIRRPLDLPLQPLVRSNSPRHQQPALSLPQPEERETEN
                     QFADPFLQEKPSSHPLDISPQHCVVDRSPPAAGPPPKAHLESLPYDERPLPATRKQPG
                     AVATEPETRDTDSSEPPRAGTMGEPEPLTEKALREASSAVDVLGEALVAGAYSKTWSH
                     REDALLALYKQLMDAPAATPKEDLKSTLRAAVFLIRRAVRDIVTPVFQASLKLLKMLI
                     TQYIPKHKLGKLETTHCVERTIPVLLTRTGDSSARLRVIASNFIQEMALFKEVKSLQL
                     IPSYLVQPLKANSSAHLAMSQMALLARLLRDLGTEGMGFTVDSVMRFAVRALEHREHK
                     VRDSAVGMILDLYAQHRALVLECLPPEDSATRRSVLYKTLFEGFATIDGRPTDAEIRA
                     QKRAATEEAEKRKKEEIKALQGQSATLKEMQAEVQEKESEAVKAKNQDTQGRKAAPPN
                     APEIPDNHYLDNLCIFCGERSDSFTEEGLDLHYWKQCLMLTRCDYCKQVVEISSLTEH
                     LLTECDKKDGFGECYRCSEAVLKEELPRHIKTRDCNPAKAEKLANRCPLCHENFTPGE
                     EAWKAHLMGPAGCTVNLRRTHVLRKAPTLPPGKGPAATKSGTSGSKVGSKIPTPKGGL
                     SKSSGRMYTKR"
     misc_feature    1491..1577
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    order(1551..1556,1563..1565,1572..1577,1689..1694,
                     1701..1703,1710..1715,1722..1724,1833..1838,1845..1847,
                     1854..1859,1866..1868,1926..1931,1938..1940,1947..1952,
                     2076..2081)
                     /gene="CEP104"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:293787"
     misc_feature    1638..1724
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1779..1871
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1887..1952
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
ORIGIN      
        1 gcggcggccg cggccggggc aacaggcgca ggcggccggg gctgctcctc ggctgccacc
       61 accgctgcgg cttgggggtg ccggccggcc cgggtcggcg gaggaggcgc ctcctgagct
      121 ccgccgaggc gcggcgctgc cgagggccgg cggagagccc gggtcgtgcg gacgtcctga
      181 cagccccggc gtgcaggatg ccccacaagc tcggatttgt cgttgtcagc tcatcgggac
      241 acgaagacgg cttcagtgcc cgggaactga tgatccatgc accgactgtc agcgggtgga
      301 ggtcaccgag gttttgccag tttccacaag aaattgttct tcaaatggtg gagagatgtc
      361 gaataagaaa actacagttg cttgctcatc agtatatgat ttccagtaaa atcgagttct
      421 acgttagtga gagcctgcct gagtatttcg caccgtatca agcagagcgg tttcgaaggc
      481 ttggctacgt ctctctctgt gacaatgaaa agacaggttg caaagcccgg gaactgaaat
      541 cggtgtatgt ggatgcagta ggacagtttc ttaagctgat ttttcaccaa aaccatatca
      601 acaagtacaa tgtgtataat caggttgctt tggtggcaat aaatatcatt ggagaccctg
      661 cggatttcag tgatgaaagc aatattacct ctagagagaa gctgattgat cattatctag
      721 ggcacaacac agaggaccca gctctcgaag gaacttgttc tgggaagtct gactatattt
      781 ccccactaga tgacttggcc tttgacatgt accaggatcc ggaagtggca cagattatcc
      841 gcaggttaga tgaaaggaag cgcgaggcgg cccagaggga gcgctacgac gacgccaaga
      901 cgctcaagca ggccatcgcc gacctgcaga aggtcgggga gcggctgggc aggtacgagg
      961 tggagaagcg ccgtgccgtg gagaaggagg actacgacct ggccaaggag aagaaacagc
     1021 agatggcgcg ctaccgcagc caggtgtacg ggcggctgca gctgcacggg ctggtggatg
     1081 ccgagctgat acgaaggcct ctggacttgc ccctccagcc cctggtccgt tccaacagcc
     1141 ctcgccacca gcagcccgcg ctctcactgc cacagccaga agaaagggag acagaaaacc
     1201 agtttgcaga ccctttcctt caggagaagc cttcatcgca tcccctggac atttctcctc
     1261 agcattgcgt ggtggaccgg tcacccccag ccgcaggtcc tcctcccaag gcccatctcg
     1321 agtccctgcc ctacgatgag cggccccttc ccgcgacccg caagcagcct ggggcagtgg
     1381 ccacggagcc agagacgcgg gacacggaca gcagcgagcc tcccagagcg ggcaccatgg
     1441 gcgagcctga gcctctaaca gagaaggcct tgcgcgaagc cagctccgcc gtggacgtgc
     1501 tgggagaggc cttggtggcc ggggcctatt ccaaaacatg gtcgcaccgg gaggacgcgc
     1561 tgctcgccct gtataaacag ctgatggatg caccggcagc aaccccaaag gaagacctga
     1621 agagcacgct gagggcggcc gtattcctca tcaggagagc tgtccgagac atcgtgaccc
     1681 cagtctttca ggcatctttg aaattgttga aaatgttaat cacacaatat attcctaaac
     1741 ataaactggg taagcttgaa acaactcact gtgtggaaag gaccattcct gttctgctca
     1801 cgagaactgg agattcttct gctcgcctcc gtgttatagc ttccaatttt attcaggaaa
     1861 tggccttgtt caaggaagtg aagtctctcc agcttatccc atcttacctg gtccagccat
     1921 taaaagccaa ctcctcggct cacctggcca tgagccagat ggcgctgctg gcccggctgc
     1981 tgcgggacct gggcacggag ggcatgggct tcaccgtgga cagcgtgatg cggttcgcag
     2041 tgcgggccct ggagcacagg gagcacaagg tgcgggattc ggcggtgggg atgatcctgg
     2101 acctgtatgc gcagcaccgg gctctggtcc tcgagtgcct ccctcccgag gacagtgcca
     2161 cccgcaggag cgtcctctat aagacacttt ttgagggatt tgctacgata gacggcagac
     2221 ctacagatgc tgaaattagg gcacagaaaa gagcggctac agaagaagca gaaaaacgca
     2281 agaaagaaga aattaaagct ttacaagggc agtcggcaac actaaaggag atgcaagctg
     2341 aagtccagga aaaagagagt gaagctgtga aggccaagaa tcaggacact caaggaagga
     2401 aagcggcccc acctaatgct ccagaaattc cagataatca ctatttagat aatttatgca
     2461 ttttttgtgg ggagaggagc gactccttca cggaagaagg cctggatctc cattactgga
     2521 agcagtgtct tatgctgacg agatgtgact actgcaagca ggtggtggag atttccagcc
     2581 tgacggagca cctgctgacg gagtgtgaca aaaaggacgg ctttggggag tgttaccgct
     2641 gcagtgaggc cgttttaaag gaagagctgc ccagacatat aaaaacgaga gactgcaacc
     2701 ctgccaaagc ggagaagctg gcgaaccggt gtcctctgtg ccacgagaat ttcacccccg
     2761 gagaagaggc gtggaaggcc cacctcatgg gccccgcggg ctgcacagtg aacctgcgcc
     2821 ggacgcacgt gctacgcaag gcgcccacgc tgccgccagg taaaggccca gccgcaacca
     2881 agtcagggac ctcgggatcc aaggtcggaa gcaagatccc cacccccaag gggggcctga
     2941 gtaaaagctc cggcaggatg tacacaaagc ggtgacacag caccgcatct gctccctcgt
     3001 ctccaaaggg accgagcagc ttccccagcc gtggacgtgt cacctcaaag catctctaga
     3061 tgtggcaacc cccgctccgc ccctgctgcc cccaggcttc tggctgcgcc cgtcccgacc
     3121 gtggcccctg catccggagt gaggccctga tctccccatg gctccggctc gcaggtctcc
     3181 accccccagg gcccggggtc cacaggagat ggtcctgctg gaggagcagc gccgggcggc
     3241 ccatgcggag ggacaggccc agggcagcac ctctgcgcag ctgcttggag cgatttccat
     3301 aaagccctca ctcgaaacct cttgcatgtg ggtctctctc agccgtggtg gaaggtctgc
     3361 agggctcgcc aggccggggc atgggatggg atgggatggg atgggggggc cagtcaccct
     3421 gtgcccctcc tccccagggt aggggggccg tcggcctgca aagcctgcat gtccacggca
     3481 gcaagaagta aggtcgaggt caagaagtta aggtcccggc ccggccccct cggctctcgc
     3541 ctgccagaca ctcggagcgc agcccacctg accctcccat cggcgcccac accaggcgga
     3601 gtggaggttg atgctggcgg ctccacgtca ggcccttcct cggggggctt caagttcttt
     3661 acacgcatga agccctagaa aaataggaga cgacattccc cgatgatcct gcactcacct
     3721 gagcacgtgt gtccgtcgaa atagcccttt cctaaacccc tggggcaggc agagcaactc
     3781 ccactctgta acattcagag gagcctccga gcctctgctc agcccgtcgt cctgtcccgc
     3841 tcggatccac gtgggaattg caactgtatg ttcacttttc tcaaacactt tgtatgatac
     3901 tttcaacacc aaaaaccact taaaatgatg aaaccaaacc tcagaatcca gtctcctgac
     3961 cagccgccaa ccaaccttcc cggcctgtgg cagtggctca cctggcttca gagccaggta
     4021 gctgtggggg agccagtgtc tgtccagaac gtgcttggaa aggccgcctt ctcgtccaca
     4081 cctgtggtcc ccaggtgccc agcccactag agaccgaaag gagatggccc tccccgcccc
     4141 acccggcccc gtgcccaggg tgtgctttcc ccctgagcac gatacaagca ggcttccagg
     4201 atgacgaaac gtgtactaca ctgttagtgt aagaatattt ttaattccca accatgtaaa
     4261 gtaacaaaat atatatttta aaactaatag ctatttgagc gatgtgctcc ctgggtatgt
     4321 tagtgaccat gaatttgtac tagtcggtca atttccattt ttggtaggct aatgctttct
     4381 catatggttg actcaaaata ctgagccaga ataagagtga ccaagagggc ttccctggtg
     4441 gcgcagtggc tgagagtcca cctgccgatg caggggacac aggttcgtgc cccggtccgg
     4501 gaagatccca catgccgcag agcggctggg cccgtgagcc atggccgctg agcctgcgca
     4561 tccggagcct gtgctccgca ccgggagagg ccacaacagt gagaggcccg cgtaccacaa
     4621 aaaaaaaaaa aaaaaagtga ccaagagaat tacctgcaaa aatatactct ataaaaaaat
     4681 gtaaaagtat ggggggagaa ataacataaa actttactag agagagcaaa gtacagatgc
     4741 caagataatt ataagatgat ccttcctggt ttcaaaaaga tgttgccatg gtctctcacc
     4801 catgagagtg aagtacagat agaacacttc tttaaacaga acaatgagaa aagttaacca
     4861 agaaatgatt cttttctctc caatcaaaac ttttaagaaa tatacagtta atgttttcta
     4921 tgtattgtaa cataaagaag atatttgtaa aattactgaa tttttagtga ttgacaaaca
     4981 aaattgagtg catttaaaac atcagtcttg ctggttacag aagaatcatg tgcttctgtt
     5041 ccgatgattc ctggccgtga tcagtggcta ttaaaatatt tacagagtta tatatatact
     5101 actaagggac gaagaataaa ggatagaaaa ctaaaaagga actgtaagct cccttggcca
     5161 ttcataaata tctaaacttg gaacagtact taattgaaat ttcactcatg aatatgttgt
     5221 ggatacttaa caatatttat ttctattatt ttcatatttc aaaatattct aatttaaaag
     5281 aattttatct ataaatttgg cattagagta caagcgtaaa cacttttaat gaaaatttgc
     5341 aactttttaa tgttttgaca tagttttcta cttgtcttta tttcacgtac caaaattata
     5401 aaatatctaa gtaatatatt tttgttgttg tttgagggct taggcgttaa ttcaccctga
     5461 gtatatgaat gtaataaaaa gattactaaa tgtcttgtca cttttatttt aaaattataa
     5521 ttaaaaagca atcggtaa
//
LOCUS       XM_032609136            5235 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centrosomal protein 104 (CEP104),
            transcript variant X2, mRNA.
ACCESSION   XM_032609136
VERSION     XM_032609136.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5235
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5235
                     /gene="CEP104"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741942"
     CDS             210..2672
                     /gene="CEP104"
                     /codon_start=1
                     /product="centrosomal protein of 104 kDa isoform X2"
                     /protein_id="XP_032465027.1"
                     /db_xref="GeneID:116741942"
                     /translation="MPHKLGFVVVSSSGHEDGFSARELMIHAPTVSGWRSPRFCQFPQ
                     EIVLQMVERCRIRKLQLLAHQYMISSKIEFYVSESLPEYFAPYQAERFRRLGYVSLCD
                     NEKTGCKARELKSVYVDAVGQFLKLIFHQNHINKYNVYNQVALVAINIIGDPADFSDE
                     SNITSREKLIDHYLGHNTEDPALEGTCSGKSDYISPLDDLAFDMYQDPEVAQIIRRLD
                     ERKREAAQRERYDDAKTLKQAIADLQKVGERLGRYEVEKRRAVEKEDYDLAKEKKQQM
                     ARYRSQVYGRLQLHGLVDAELIRRPLDLPLQPLVRSNSPRHQQPALSLPQPEERETEN
                     QFADPFLQEKPSSHPLDISPQHCVVDRSPPAAGPPPKAHLESLPYDERPLPATRKQPG
                     AVATEPETRDTDSSEPPRAGTMGEPEPLTEKALREASSAVDVLGEALVAGAYSKTWSH
                     REDALLALYKQLMDAPAATPKEDLKSTLRAAVFLIRRAVRDIVTPVFQASLKLLKMLI
                     TQYIPKHKLGKLETTHCVERTIPVLLTRTGDSSARLRVIASNFIQEMALFKEVKSLQL
                     IPSYLVQPLKANSSAHLAMSQMALLARLLRDLGTEGMGFTVDSVMREKESEAVKAKNQ
                     DTQGRKAAPPNAPEIPDNHYLDNLCIFCGERSDSFTEEGLDLHYWKQCLMLTRCDYCK
                     QVVEISSLTEHLLTECDKKDGFGECYRCSEAVLKEELPRHIKTRDCNPAKAEKLANRC
                     PLCHENFTPGEEAWKAHLMGPAGCTVNLRRTHVLRKAPTLPPGKGPAATKSGTSGSKV
                     GSKIPTPKGGLSKSSGRMYTKR"
ORIGIN      
        1 gttgtcatga gagcggcggc cgcggccggg gcaacaggcg caggcggccg gggctgctcc
       61 tcggctgcca ccaccgctgc ggcttggggg tgccggccgg cccgggtcgg cggaggaggc
      121 gcctcctgag ctccgccgag gcgcggcgct gccgagggcc ggcggagagc ccgggtcgtg
      181 cggacgtcct gacagccccg gcgtgcagga tgccccacaa gctcggattt gtcgttgtca
      241 gctcatcggg acacgaagac ggcttcagtg cccgggaact gatgatccat gcaccgactg
      301 tcagcgggtg gaggtcaccg aggttttgcc agtttccaca agaaattgtt cttcaaatgg
      361 tggagagatg tcgaataaga aaactacagt tgcttgctca tcagtatatg atttccagta
      421 aaatcgagtt ctacgttagt gagagcctgc ctgagtattt cgcaccgtat caagcagagc
      481 ggtttcgaag gcttggctac gtctctctct gtgacaatga aaagacaggt tgcaaagccc
      541 gggaactgaa atcggtgtat gtggatgcag taggacagtt tcttaagctg atttttcacc
      601 aaaaccatat caacaagtac aatgtgtata atcaggttgc tttggtggca ataaatatca
      661 ttggagaccc tgcggatttc agtgatgaaa gcaatattac ctctagagag aagctgattg
      721 atcattatct agggcacaac acagaggacc cagctctcga aggaacttgt tctgggaagt
      781 ctgactatat ttccccacta gatgacttgg cctttgacat gtaccaggat ccggaagtgg
      841 cacagattat ccgcaggtta gatgaaagga agcgcgaggc ggcccagagg gagcgctacg
      901 acgacgccaa gacgctcaag caggccatcg ccgacctgca gaaggtcggg gagcggctgg
      961 gcaggtacga ggtggagaag cgccgtgccg tggagaagga ggactacgac ctggccaagg
     1021 agaagaaaca gcagatggcg cgctaccgca gccaggtgta cgggcggctg cagctgcacg
     1081 ggctggtgga tgccgagctg atacgaaggc ctctggactt gcccctccag cccctggtcc
     1141 gttccaacag ccctcgccac cagcagcccg cgctctcact gccacagcca gaagaaaggg
     1201 agacagaaaa ccagtttgca gaccctttcc ttcaggagaa gccttcatcg catcccctgg
     1261 acatttctcc tcagcattgc gtggtggacc ggtcaccccc agccgcaggt cctcctccca
     1321 aggcccatct cgagtccctg ccctacgatg agcggcccct tcccgcgacc cgcaagcagc
     1381 ctggggcagt ggccacggag ccagagacgc gggacacgga cagcagcgag cctcccagag
     1441 cgggcaccat gggcgagcct gagcctctaa cagagaaggc cttgcgcgaa gccagctccg
     1501 ccgtggacgt gctgggagag gccttggtgg ccggggccta ttccaaaaca tggtcgcacc
     1561 gggaggacgc gctgctcgcc ctgtataaac agctgatgga tgcaccggca gcaaccccaa
     1621 aggaagacct gaagagcacg ctgagggcgg ccgtattcct catcaggaga gctgtccgag
     1681 acatcgtgac cccagtcttt caggcatctt tgaaattgtt gaaaatgtta atcacacaat
     1741 atattcctaa acataaactg ggtaagcttg aaacaactca ctgtgtggaa aggaccattc
     1801 ctgttctgct cacgagaact ggagattctt ctgctcgcct ccgtgttata gcttccaatt
     1861 ttattcagga aatggccttg ttcaaggaag tgaagtctct ccagcttatc ccatcttacc
     1921 tggtccagcc attaaaagcc aactcctcgg ctcacctggc catgagccag atggcgctgc
     1981 tggcccggct gctgcgggac ctgggcacgg agggcatggg cttcaccgtg gacagcgtga
     2041 tgcgggaaaa agagagtgaa gctgtgaagg ccaagaatca ggacactcaa ggaaggaaag
     2101 cggccccacc taatgctcca gaaattccag ataatcacta tttagataat ttatgcattt
     2161 tttgtgggga gaggagcgac tccttcacgg aagaaggcct ggatctccat tactggaagc
     2221 agtgtcttat gctgacgaga tgtgactact gcaagcaggt ggtggagatt tccagcctga
     2281 cggagcacct gctgacggag tgtgacaaaa aggacggctt tggggagtgt taccgctgca
     2341 gtgaggccgt tttaaaggaa gagctgccca gacatataaa aacgagagac tgcaaccctg
     2401 ccaaagcgga gaagctggcg aaccggtgtc ctctgtgcca cgagaatttc acccccggag
     2461 aagaggcgtg gaaggcccac ctcatgggcc ccgcgggctg cacagtgaac ctgcgccgga
     2521 cgcacgtgct acgcaaggcg cccacgctgc cgccaggtaa aggcccagcc gcaaccaagt
     2581 cagggacctc gggatccaag gtcggaagca agatccccac ccccaagggg ggcctgagta
     2641 aaagctccgg caggatgtac acaaagcggt gacacagcac cgcatctgct ccctcgtctc
     2701 caaagggacc gagcagcttc cccagccgtg gacgtgtcac ctcaaagcat ctctagatgt
     2761 ggcaaccccc gctccgcccc tgctgccccc aggcttctgg ctgcgcccgt cccgaccgtg
     2821 gcccctgcat ccggagtgag gccctgatct ccccatggct ccggctcgca ggtctccacc
     2881 ccccagggcc cggggtccac aggagatggt cctgctggag gagcagcgcc gggcggccca
     2941 tgcggaggga caggcccagg gcagcacctc tgcgcagctg cttggagcga tttccataaa
     3001 gccctcactc gaaacctctt gcatgtgggt ctctctcagc cgtggtggaa ggtctgcagg
     3061 gctcgccagg ccggggcatg ggatgggatg ggatgggatg ggggggccag tcaccctgtg
     3121 cccctcctcc ccagggtagg ggggccgtcg gcctgcaaag cctgcatgtc cacggcagca
     3181 agaagtaagg tcgaggtcaa gaagttaagg tcccggcccg gccccctcgg ctctcgcctg
     3241 ccagacactc ggagcgcagc ccacctgacc ctcccatcgg cgcccacacc aggcggagtg
     3301 gaggttgatg ctggcggctc cacgtcaggc ccttcctcgg ggggcttcaa gttctttaca
     3361 cgcatgaagc cctagaaaaa taggagacga cattccccga tgatcctgca ctcacctgag
     3421 cacgtgtgtc cgtcgaaata gccctttcct aaacccctgg ggcaggcaga gcaactccca
     3481 ctctgtaaca ttcagaggag cctccgagcc tctgctcagc ccgtcgtcct gtcccgctcg
     3541 gatccacgtg ggaattgcaa ctgtatgttc acttttctca aacactttgt atgatacttt
     3601 caacaccaaa aaccacttaa aatgatgaaa ccaaacctca gaatccagtc tcctgaccag
     3661 ccgccaacca accttcccgg cctgtggcag tggctcacct ggcttcagag ccaggtagct
     3721 gtgggggagc cagtgtctgt ccagaacgtg cttggaaagg ccgccttctc gtccacacct
     3781 gtggtcccca ggtgcccagc ccactagaga ccgaaaggag atggccctcc ccgccccacc
     3841 cggccccgtg cccagggtgt gctttccccc tgagcacgat acaagcaggc ttccaggatg
     3901 acgaaacgtg tactacactg ttagtgtaag aatattttta attcccaacc atgtaaagta
     3961 acaaaatata tattttaaaa ctaatagcta tttgagcgat gtgctccctg ggtatgttag
     4021 tgaccatgaa tttgtactag tcggtcaatt tccatttttg gtaggctaat gctttctcat
     4081 atggttgact caaaatactg agccagaata agagtgacca agagggcttc cctggtggcg
     4141 cagtggctga gagtccacct gccgatgcag gggacacagg ttcgtgcccc ggtccgggaa
     4201 gatcccacat gccgcagagc ggctgggccc gtgagccatg gccgctgagc ctgcgcatcc
     4261 ggagcctgtg ctccgcaccg ggagaggcca caacagtgag aggcccgcgt accacaaaaa
     4321 aaaaaaaaaa aaagtgacca agagaattac ctgcaaaaat atactctata aaaaaatgta
     4381 aaagtatggg gggagaaata acataaaact ttactagaga gagcaaagta cagatgccaa
     4441 gataattata agatgatcct tcctggtttc aaaaagatgt tgccatggtc tctcacccat
     4501 gagagtgaag tacagataga acacttcttt aaacagaaca atgagaaaag ttaaccaaga
     4561 aatgattctt ttctctccaa tcaaaacttt taagaaatat acagttaatg ttttctatgt
     4621 attgtaacat aaagaagata tttgtaaaat tactgaattt ttagtgattg acaaacaaaa
     4681 ttgagtgcat ttaaaacatc agtcttgctg gttacagaag aatcatgtgc ttctgttccg
     4741 atgattcctg gccgtgatca gtggctatta aaatatttac agagttatat atatactact
     4801 aagggacgaa gaataaagga tagaaaacta aaaaggaact gtaagctccc ttggccattc
     4861 ataaatatct aaacttggaa cagtacttaa ttgaaatttc actcatgaat atgttgtgga
     4921 tacttaacaa tatttatttc tattattttc atatttcaaa atattctaat ttaaaagaat
     4981 tttatctata aatttggcat tagagtacaa gcgtaaacac ttttaatgaa aatttgcaac
     5041 tttttaatgt tttgacatag ttttctactt gtctttattt cacgtaccaa aattataaaa
     5101 tatctaagta atatattttt gttgttgttt gagggcttag gcgttaattc accctgagta
     5161 tatgaatgta ataaaaagat tactaaatgt cttgtcactt ttattttaaa attataatta
     5221 aaaagcaatc ggtaa
//
LOCUS       XM_032609144            2630 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centrosomal protein 104 (CEP104),
            transcript variant X3, mRNA.
ACCESSION   XM_032609144
VERSION     XM_032609144.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2630
                     /gene="CEP104"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741942"
     CDS             198..2471
                     /gene="CEP104"
                     /codon_start=1
                     /product="centrosomal protein of 104 kDa isoform X3"
                     /protein_id="XP_032465035.1"
                     /db_xref="GeneID:116741942"
                     /translation="MPHKLGFVVVSSSGHEDGFSARELMIHAPTVSGWRSPRFCQFPQ
                     EIVLQMVERCRIRKLQLLAHQYMISSKIEFYVSESLPEYFAPYQAERFRRLGYVSLCD
                     NEKTGCKARELKSVYVDAVGQFLKLIFHQNHINKYNVYNQVALVAINIIGDPADFSDE
                     SNITSREKLIDHYLGHNTEDPALEGTCSGKSDYISPLDDLAFDMYQDPEVAQIIRRLD
                     ERKREAAQRERYDDAKTLKQAIADLQKVGERLGRYEVEKRRAVEKEDYDLAKEKKQQM
                     ARYRSQVYGRLQLHGLVDAELIRRPLDLPLQPLVRSNSPRHQQPALSLPQPEERETEN
                     QFADPFLQEKPSSHPLDISPQHCVVDRSPPAAGPPPKAHLESLPYDERPLPATRKQPG
                     AVATEPETRDTDSSEPPRAGTMGEPEPLTEKALREASSAVDVLGEALVAGAYSKTWSH
                     REDALLALYKQLMDAPAATPKEDLKSTLRAAVFLIRRAVRDIVTPVFQASLKLLKMLI
                     TQYIPKHKLGKLETTHCVERTIPVLLTRTGDSSARLRVIASNFIQEMALFKEVKSLQL
                     IPSYLVQPLKANSSAHLAMSQMALLARLLRDLGTEGMGFTVDSVMRFAVRALEHREHK
                     VRDSAVGMILDLYAQHRALVLECLPPEDSATRRSVLYKTLFEGFATIDGRPTDAEIRA
                     QKRAATEEAEKRKKEEIKALQGQSATLKEMQAEVQEKESEAVKAKNQVYAFFVGRGAT
                     PSRKKAWISITGSSVLC"
     misc_feature    1491..1577
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    order(1551..1556,1563..1565,1572..1577,1689..1694,
                     1701..1703,1710..1715,1722..1724,1833..1838,1845..1847,
                     1854..1859,1866..1868,1926..1931,1938..1940,1947..1952,
                     2076..2081)
                     /gene="CEP104"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:293787"
     misc_feature    1638..1724
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1779..1871
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1887..1952
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
ORIGIN      
        1 gcggcggccg cggccggggc aacaggcgca ggcggccggg gctgctcctc ggctgccacc
       61 accgctgcgg cttgggggtg ccggccggcc cgggtcggcg gaggaggcgc ctcctgagct
      121 ccgccgaggc gcggcgctgc cgagggccgg cggagagccc gggtcgtgcg gacgtcctga
      181 cagccccggc gtgcaggatg ccccacaagc tcggatttgt cgttgtcagc tcatcgggac
      241 acgaagacgg cttcagtgcc cgggaactga tgatccatgc accgactgtc agcgggtgga
      301 ggtcaccgag gttttgccag tttccacaag aaattgttct tcaaatggtg gagagatgtc
      361 gaataagaaa actacagttg cttgctcatc agtatatgat ttccagtaaa atcgagttct
      421 acgttagtga gagcctgcct gagtatttcg caccgtatca agcagagcgg tttcgaaggc
      481 ttggctacgt ctctctctgt gacaatgaaa agacaggttg caaagcccgg gaactgaaat
      541 cggtgtatgt ggatgcagta ggacagtttc ttaagctgat ttttcaccaa aaccatatca
      601 acaagtacaa tgtgtataat caggttgctt tggtggcaat aaatatcatt ggagaccctg
      661 cggatttcag tgatgaaagc aatattacct ctagagagaa gctgattgat cattatctag
      721 ggcacaacac agaggaccca gctctcgaag gaacttgttc tgggaagtct gactatattt
      781 ccccactaga tgacttggcc tttgacatgt accaggatcc ggaagtggca cagattatcc
      841 gcaggttaga tgaaaggaag cgcgaggcgg cccagaggga gcgctacgac gacgccaaga
      901 cgctcaagca ggccatcgcc gacctgcaga aggtcgggga gcggctgggc aggtacgagg
      961 tggagaagcg ccgtgccgtg gagaaggagg actacgacct ggccaaggag aagaaacagc
     1021 agatggcgcg ctaccgcagc caggtgtacg ggcggctgca gctgcacggg ctggtggatg
     1081 ccgagctgat acgaaggcct ctggacttgc ccctccagcc cctggtccgt tccaacagcc
     1141 ctcgccacca gcagcccgcg ctctcactgc cacagccaga agaaagggag acagaaaacc
     1201 agtttgcaga ccctttcctt caggagaagc cttcatcgca tcccctggac atttctcctc
     1261 agcattgcgt ggtggaccgg tcacccccag ccgcaggtcc tcctcccaag gcccatctcg
     1321 agtccctgcc ctacgatgag cggccccttc ccgcgacccg caagcagcct ggggcagtgg
     1381 ccacggagcc agagacgcgg gacacggaca gcagcgagcc tcccagagcg ggcaccatgg
     1441 gcgagcctga gcctctaaca gagaaggcct tgcgcgaagc cagctccgcc gtggacgtgc
     1501 tgggagaggc cttggtggcc ggggcctatt ccaaaacatg gtcgcaccgg gaggacgcgc
     1561 tgctcgccct gtataaacag ctgatggatg caccggcagc aaccccaaag gaagacctga
     1621 agagcacgct gagggcggcc gtattcctca tcaggagagc tgtccgagac atcgtgaccc
     1681 cagtctttca ggcatctttg aaattgttga aaatgttaat cacacaatat attcctaaac
     1741 ataaactggg taagcttgaa acaactcact gtgtggaaag gaccattcct gttctgctca
     1801 cgagaactgg agattcttct gctcgcctcc gtgttatagc ttccaatttt attcaggaaa
     1861 tggccttgtt caaggaagtg aagtctctcc agcttatccc atcttacctg gtccagccat
     1921 taaaagccaa ctcctcggct cacctggcca tgagccagat ggcgctgctg gcccggctgc
     1981 tgcgggacct gggcacggag ggcatgggct tcaccgtgga cagcgtgatg cggttcgcag
     2041 tgcgggccct ggagcacagg gagcacaagg tgcgggattc ggcggtgggg atgatcctgg
     2101 acctgtatgc gcagcaccgg gctctggtcc tcgagtgcct ccctcccgag gacagtgcca
     2161 cccgcaggag cgtcctctat aagacacttt ttgagggatt tgctacgata gacggcagac
     2221 ctacagatgc tgaaattagg gcacagaaaa gagcggctac agaagaagca gaaaaacgca
     2281 agaaagaaga aattaaagct ttacaagggc agtcggcaac actaaaggag atgcaagctg
     2341 aagtccagga aaaagagagt gaagctgtga aggccaagaa tcaggtttat gcattttttg
     2401 tggggagagg agcgactcct tcacggaaga aggcctggat ctccattact ggaagcagtg
     2461 tcttatgctg acgagatgtg actactgcaa gcaggtggtg gagatttcca gcctgacgga
     2521 gcacctgctg acggagtgtg acaaaaagga cggctttggg gagtgttacc gctgcagtga
     2581 ggccgtttta aaggaagagc tgcccagaca tataaaaacg agagactgca
//
LOCUS       XM_032609151            2263 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centrosomal protein 104 (CEP104),
            transcript variant X4, mRNA.
ACCESSION   XM_032609151
VERSION     XM_032609151.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2263
                     /gene="CEP104"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741942"
     CDS             95..2263
                     /gene="CEP104"
                     /codon_start=1
                     /product="centrosomal protein of 104 kDa isoform X4"
                     /protein_id="XP_032465042.1"
                     /db_xref="GeneID:116741942"
                     /translation="MYQDPEVAQIIRRLDERKREAAQRERYDDAKTLKQAIADLQKVG
                     ERLGRYEVEKRRAVEKEDYDLAKEKKQQMARYRSQVYGRLQLHGLVDAELIRRPLDLP
                     LQPLVRSNSPRHQQPALSLPQPEERETENQFADPFLQEKPSSHPLDISPQHCVVDRSP
                     PAAGPPPKAHLESLPYDERPLPATRKQPGAVATEPETRDTDSSEPPRAGTMGEPEPLT
                     EKALREASSAVDVLGEALVAGAYSKTWSHREDALLALYKQLMDAPAATPKEDLKSTLR
                     AAVFLIRRAVRDIVTPVFQASLKLLKMLITQYIPKHKLGKLETTHCVERTIPVLLTRT
                     GDSSARLRVIASNFIQEMALFKEVKSLQLIPSYLVQPLKANSSAHLAMSQMALLARLL
                     RDLGTEGMGFTVDSVMRFAVRALEHREHKVRDSAVGMILDLYAQHRALVLECLPPEDS
                     ATRRSVLYKTLFEGFATIDGRPTDAEIRAQKRAATEEAEKRKKEEIKALQGQSATLKE
                     MQAEVQEKESEAVKAKNQDTQGRKAAPPNAPEIPDNHYLDNLCIFCGERSDSFTEEGL
                     DLHYWKQCLMLTRCDYCKQVVEISSLTEHLLTECDKKDGFGECYRCSEAVLKEELPRH
                     IKTRDCNPAKAEKLANRCPLCHENFTPGEEAWKAHLMGPAGCTVNLRRTHVLRKAPTL
                     PPGKGPAATKSGTSGSKVGSKIPTPKGGLSKSSGRMYTKR"
     misc_feature    779..865
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    order(839..844,851..853,860..865,977..982,989..991,
                     998..1003,1010..1012,1121..1126,1133..1135,1142..1147,
                     1154..1156,1214..1219,1226..1228,1235..1240,1364..1369)
                     /gene="CEP104"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:293787"
     misc_feature    926..1012
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1067..1159
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
     misc_feature    1175..1240
                     /gene="CEP104"
                     /note="HEAT repeat [structural motif]; Region: HEAT
                     repeat"
                     /db_xref="CDD:293787"
ORIGIN      
        1 acctctagag agaagctgat tgatcattat ctagggcaca acacagagga cccagctctc
       61 gaaggaactt gttctggatg acttggcctt tgacatgtac caggatccgg aagtggcaca
      121 gattatccgc aggttagatg aaaggaagcg cgaggcggcc cagagggagc gctacgacga
      181 cgccaagacg ctcaagcagg ccatcgccga cctgcagaag gtcggggagc ggctgggcag
      241 gtacgaggtg gagaagcgcc gtgccgtgga gaaggaggac tacgacctgg ccaaggagaa
      301 gaaacagcag atggcgcgct accgcagcca ggtgtacggg cggctgcagc tgcacgggct
      361 ggtggatgcc gagctgatac gaaggcctct ggacttgccc ctccagcccc tggtccgttc
      421 caacagccct cgccaccagc agcccgcgct ctcactgcca cagccagaag aaagggagac
      481 agaaaaccag tttgcagacc ctttccttca ggagaagcct tcatcgcatc ccctggacat
      541 ttctcctcag cattgcgtgg tggaccggtc acccccagcc gcaggtcctc ctcccaaggc
      601 ccatctcgag tccctgccct acgatgagcg gccccttccc gcgacccgca agcagcctgg
      661 ggcagtggcc acggagccag agacgcggga cacggacagc agcgagcctc ccagagcggg
      721 caccatgggc gagcctgagc ctctaacaga gaaggccttg cgcgaagcca gctccgccgt
      781 ggacgtgctg ggagaggcct tggtggccgg ggcctattcc aaaacatggt cgcaccggga
      841 ggacgcgctg ctcgccctgt ataaacagct gatggatgca ccggcagcaa ccccaaagga
      901 agacctgaag agcacgctga gggcggccgt attcctcatc aggagagctg tccgagacat
      961 cgtgacccca gtctttcagg catctttgaa attgttgaaa atgttaatca cacaatatat
     1021 tcctaaacat aaactgggta agcttgaaac aactcactgt gtggaaagga ccattcctgt
     1081 tctgctcacg agaactggag attcttctgc tcgcctccgt gttatagctt ccaattttat
     1141 tcaggaaatg gccttgttca aggaagtgaa gtctctccag cttatcccat cttacctggt
     1201 ccagccatta aaagccaact cctcggctca cctggccatg agccagatgg cgctgctggc
     1261 ccggctgctg cgggacctgg gcacggaggg catgggcttc accgtggaca gcgtgatgcg
     1321 gttcgcagtg cgggccctgg agcacaggga gcacaaggtg cgggattcgg cggtggggat
     1381 gatcctggac ctgtatgcgc agcaccgggc tctggtcctc gagtgcctcc ctcccgagga
     1441 cagtgccacc cgcaggagcg tcctctataa gacacttttt gagggatttg ctacgataga
     1501 cggcagacct acagatgctg aaattagggc acagaaaaga gcggctacag aagaagcaga
     1561 aaaacgcaag aaagaagaaa ttaaagcttt acaagggcag tcggcaacac taaaggagat
     1621 gcaagctgaa gtccaggaaa aagagagtga agctgtgaag gccaagaatc aggacactca
     1681 aggaaggaaa gcggccccac ctaatgctcc agaaattcca gataatcact atttagataa
     1741 tttatgcatt ttttgtgggg agaggagcga ctccttcacg gaagaaggcc tggatctcca
     1801 ttactggaag cagtgtctta tgctgacgag atgtgactac tgcaagcagg tggtggagat
     1861 ttccagcctg acggagcacc tgctgacgga gtgtgacaaa aaggacggct ttggggagtg
     1921 ttaccgctgc agtgaggccg ttttaaagga agagctgccc agacatataa aaacgagaga
     1981 ctgcaaccct gccaaagcgg agaagctggc gaaccggtgt cctctgtgcc acgagaattt
     2041 cacccccgga gaagaggcgt ggaaggccca cctcatgggc cccgcgggct gcacagtgaa
     2101 cctgcgccgg acgcacgtgc tacgcaaggc gcccacgctg ccgccaggta aaggcccagc
     2161 cgcaaccaag tcagggacct cgggatccaa ggtcggaagc aagatcccca cccccaaggg
     2221 gggcctgagt aaaagctccg gcaggatgta cacaaagcgg tga
//
LOCUS       XM_032609164            2131 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA fragmentation factor subunit beta
            (DFFB), mRNA.
ACCESSION   XM_032609164
VERSION     XM_032609164.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2131
                     /gene="DFFB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 14
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741959"
     CDS             172..1197
                     /gene="DFFB"
                     /codon_start=1
                     /product="DNA fragmentation factor subunit beta"
                     /protein_id="XP_032465055.1"
                     /db_xref="GeneID:116741959"
                     /translation="MSAVLQKLKRFKLRALHNQKKFGVAGRNCEEVLRKGCLHLQLPV
                     PGSTLCLYEDGTEVTGDYFWSVPDDSELVLLTAGQTWQGYASDISRFLSVFQEPHAEL
                     IQAARQLLSDERAPLRQKLLADLLGTVSENIAAETRAEDAPWFEGLESRFRNKSGYLR
                     YSCESRIRSYLREVTSGASLVVTEAREEYLRVVGAMCQKLQAARYNSSYFDRGAKAGR
                     RLCTPEGWFSCQGPFDVDDCASRHSINPYSNRESRVLFSTWNLDHVIEKKRTVVPTLA
                     AAIHDAEGREVDWKYFYRLLFTSENLKLVHIACHKKTTHKLLCDPSRIYRAPAVPRRK
                     RRARQRP"
     misc_feature    190..420
                     /gene="DFFB"
                     /note="CIDE_N domain, found at the N-terminus of the CIDE
                     (cell death-inducing DFF45-like effector) proteins, as
                     well as CAD nuclease (caspase-activated DNase/DNA
                     fragmentation factor, DFF40) and its inhibitor,
                     ICAD(DFF45). These proteins are associated with...;
                     Region: CIDE_N; cl02541"
                     /db_xref="CDD:470607"
     misc_feature    order(205..207,232..237,241..246,274..276,286..288,
                     331..333,337..342,352..357,412..414,418..420)
                     /gene="DFFB"
                     /note="putative heterodimer interaction sites [polypeptide
                     binding]; other site"
                     /db_xref="CDD:119367"
     misc_feature    478..1149
                     /gene="DFFB"
                     /note="DNA fragmentation factor 40 kDa; Region: DFF40;
                     pfam09230"
                     /db_xref="CDD:462717"
ORIGIN      
        1 gcctgcgcac aaggcggggt catgccgccg cttcccgggc cttctgggta gtgtagtttc
       61 gggggcgggg gcggctcggg gccttgattc cccttcgtgg aaacccccag gcgcggacac
      121 acggcgcggc tcgccgcgta ggcgccgccc gcggggccgg aatctctgag gatgtctgcg
      181 gtgctccaga aactcaagag gttcaagctg cgggccctgc acaaccagaa gaaatttggg
      241 gtggcgggca ggaactgtga ggaagtgctg cggaaggggt gcctccactt gcagctcccc
      301 gttcctggct ccaccctgtg tctctacgag gatggcacgg aggtgactgg agattacttc
      361 tggagtgtcc ccgatgactc ggagctcgtg cttctcactg cggggcagac ctggcagggt
      421 tacgcgagtg acatcagccg cttcctgagc gtgttccagg agccgcacgc agagctcatc
      481 caggccgccc ggcagctgct gtcggacgag cgggccccgc tgcgtcagaa gctcctggcc
      541 gacctgctgg gcaccgtcag tgagaacatc gcggccgaga ccagggccga ggacgcgccg
      601 tggttcgaag gtttggagtc ccggtttagg aacaagtctg gctacctgag atacagctgt
      661 gagagccgga tccggagcta cctgagagag gtgacgtctg gcgcgtccct ggttgtgacg
      721 gaggctaggg aagagtacct gcgggtcgtg ggtgccatgt gtcagaagct ccaggccgcc
      781 cgctacaaca gcagctactt cgacaggggg gcgaaggccg gccgccggct ctgcacgccc
      841 gaaggctggt tctcctgtca gggtcccttt gacgtggacg actgtgcttc cagacactcc
      901 atcaacccct acagtaacag agagagccgc gtcctcttta gcacctggaa cctggaccac
      961 gtgatagaaa agaagcgcac ggtcgtcccc acgctggccg cggccatcca cgacgccgag
     1021 gggagagaag tggactggaa gtacttctac cgcctgctct tcacctctga gaacctcaag
     1081 ttagtccaca tcgcctgcca caagaagacc acccacaaac tcctctgtga ccccagcagg
     1141 atctaccgag ccccggcggt gccccggagg aagcggcgtg ctcgccagcg cccgtgatgc
     1201 agcccggaca gcacgtgcat ccttccaaga ggtgctcctt tttttgtttt tttggccact
     1261 ccaatattcc cggaaaacac ttgaaaaaaa atcttcctac agattctggt ttgagcacat
     1321 ttctgaagct gtctcctgac ctctgcaagc ccagctgcca gaggacgatt ctggtggctc
     1381 ccgggacacc caggctcagg agtggcctcc ctccggcttc acccatgtgt gtgtgcggtg
     1441 tccccagcca ggcggctccc ctctcgcctg gccactcggg cttcagggag cttgtgtgag
     1501 ccctcagctc ctctgggcct ccacgcccca ggcaaatgca gtgctccgtg ctctggtctc
     1561 ttctaaatgc tcgaaagagt cgtgaccctt ttggggtaaa atacaaggat attcactgct
     1621 gtattatttc taactgcaga aagtgggaaa ccctccaaat gtccgtgggg ctgcttgtgg
     1681 cattctgctg acccacaggc aattgctgtt tctgtgggtc caaaatggtc aggtagatag
     1741 cattaattca tgactcaacc tgacacatct actctgtaac ggtttcgggc gtttatgtga
     1801 gaagtgggaa gctggctgtt aagtgcacga ggcaggcagg tggctcggcc atgcccagtg
     1861 tgacacgggt gtgtatcaca cgtatgtgcc ggtcatgcag agaccgtcac tgcgtgtgaa
     1921 gagcaggaaa cctggggggt gggggtgggg tgactgggtc acaaaggact aattttctaa
     1981 atcatgcatt ttataatact tgaagttttt gaaatgagca tttatttcat aattttttta
     2041 aatttacttt tttaaagtca cattttataa tacttgaatt tttacatgta ctgtataatc
     2101 acgaaagcaa taaagatttt ttaaaaatag a
//
LOCUS       XM_032609177            1341 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf174 homolog
            (C1H1orf174), transcript variant X1, mRNA.
ACCESSION   XM_032609177
VERSION     XM_032609177.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1341
                     /gene="C1H1orf174"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741965"
     CDS             114..842
                     /gene="C1H1orf174"
                     /codon_start=1
                     /product="UPF0688 protein C1orf174 homolog isoform X1"
                     /protein_id="XP_032465068.1"
                     /db_xref="GeneID:116741965"
                     /translation="MRSRKLAGGVRSSARLRARSCLAASASAQEAHVVTSARTACQPS
                     SSQKATDRRTSKKFKYDKGHLVKSEFQKPIPQSDSTAAPTVTPETPGQREPLASAEDR
                     ARLPGKEASGSAPQGTAGLPQEHCGAMSDACPVETEDRPPPPRCGAPAGGESDSGCPE
                     RDGAVADLEQSHTPPLQMDNSVLLDDDSNQPMPVSRFFGNVELMQDLPPASSSCPSMS
                     RREFRKMHFRAKDDDDDDADGAET"
     misc_feature    129..803
                     /gene="C1H1orf174"
                     /note="UPF0688 family; Region: UPF0688; pfam15772"
                     /db_xref="CDD:464860"
ORIGIN      
        1 agacgccgcg gcgcgagccg agggcggccg ggtagcttct ctgctggaga gtgttaggcc
       61 cggcgctggg gcttggcggc ggggctgggg gcggcaacgc gccgctcaca ctcatgagga
      121 gccggaagct ggcaggtgga gtgcggtcct cggcgcgcct ccgagcccgg agctgcttgg
      181 ccgcatcggc ctcggcccag gaagcccacg tcgtcacgtc tgcccggacg gcatgtcagc
      241 cttcctcatc acaaaaagcc accgacaggc gcacgtccaa gaagttcaag tacgacaaag
      301 gtcatcttgt gaagtcagaa ttccagaaac ccatccccca gagtgacagc actgctgcgc
      361 ccacagtgac ccccgagacc ccaggtcagc gcgagcctct ggcatcggct gaggacaggg
      421 ccaggcttcc gggaaaggaa gccagcggct ccgctcctca ggggaccgca ggactccccc
      481 aggagcactg tggagccatg agtgacgcct gcccggtaga gacagaggac aggccgcccc
      541 cgccgagatg cggggcccct gcgggaggag agtccgacag tggctgcccc gagagggacg
      601 gggcggtggc ggacctggag cagagccaca cgcctccact gcagatggac aacagcgtcc
      661 ttctcgacga cgacagcaac cagccgatgc cagtgagccg cttcttcgga aacgtcgagc
      721 tcatgcagga cctcccgcca gcatcgtcat cctgcccgtc gatgagcaga cgcgaattca
      781 ggaaaatgca tttcagagcc aaagacgacg atgacgacga tgccgacggt gcagagacat
      841 agagggtgag acgcacacgc cgatcctctg cacgttcagt accgttgacc gcttcccagt
      901 tgagcacatt agacatttat accaaaccta tctccaagag tccatgcttc taatcagaat
      961 tcagaactga cccacaaggg tcagcagcac agaacgccac gtacccgcgg ggaggctggc
     1021 acacgtgaac tagagacctc tgcgtgcaca gctgtttccg cagcgatgcg ttttctccca
     1081 tctgtaccca cgggggtgac tccagctaac ttctctcgta aacgagagat ctctctgtaa
     1141 aggagactct taagcttagc tttgataacg tgcaagttta ttttccataa tcagaattcg
     1201 atcattcttg tgactgattc aatcccagtt cttaaagaac tctcctttac ttctgtatat
     1261 gaagctcatg tgtaccttgg acattcagca aaatccatat ggaaaagaaa taaaatatat
     1321 tttgaaaata tttttcaaga a
//
LOCUS       XM_032609184            1230 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf174 homolog
            (C1H1orf174), transcript variant X2, mRNA.
ACCESSION   XM_032609184
VERSION     XM_032609184.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1230
                     /gene="C1H1orf174"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741965"
     CDS             114..731
                     /gene="C1H1orf174"
                     /codon_start=1
                     /product="UPF0688 protein C1orf174 homolog isoform X2"
                     /protein_id="XP_032465075.1"
                     /db_xref="GeneID:116741965"
                     /translation="MRSRKPSSSQKATDRRTSKKFKYDKGHLVKSEFQKPIPQSDSTA
                     APTVTPETPGQREPLASAEDRARLPGKEASGSAPQGTAGLPQEHCGAMSDACPVETED
                     RPPPPRCGAPAGGESDSGCPERDGAVADLEQSHTPPLQMDNSVLLDDDSNQPMPVSRF
                     FGNVELMQDLPPASSSCPSMSRREFRKMHFRAKDDDDDDADGAET"
     misc_feature    132..692
                     /gene="C1H1orf174"
                     /note="UPF0688 family; Region: UPF0688; pfam15772"
                     /db_xref="CDD:464860"
ORIGIN      
        1 agacgccgcg gcgcgagccg agggcggccg ggtagcttct ctgctggaga gtgttaggcc
       61 cggcgctggg gcttggcggc ggggctgggg gcggcaacgc gccgctcaca ctcatgagga
      121 gccggaagcc ttcctcatca caaaaagcca ccgacaggcg cacgtccaag aagttcaagt
      181 acgacaaagg tcatcttgtg aagtcagaat tccagaaacc catcccccag agtgacagca
      241 ctgctgcgcc cacagtgacc cccgagaccc caggtcagcg cgagcctctg gcatcggctg
      301 aggacagggc caggcttccg ggaaaggaag ccagcggctc cgctcctcag gggaccgcag
      361 gactccccca ggagcactgt ggagccatga gtgacgcctg cccggtagag acagaggaca
      421 ggccgccccc gccgagatgc ggggcccctg cgggaggaga gtccgacagt ggctgccccg
      481 agagggacgg ggcggtggcg gacctggagc agagccacac gcctccactg cagatggaca
      541 acagcgtcct tctcgacgac gacagcaacc agccgatgcc agtgagccgc ttcttcggaa
      601 acgtcgagct catgcaggac ctcccgccag catcgtcatc ctgcccgtcg atgagcagac
      661 gcgaattcag gaaaatgcat ttcagagcca aagacgacga tgacgacgat gccgacggtg
      721 cagagacata gagggtgaga cgcacacgcc gatcctctgc acgttcagta ccgttgaccg
      781 cttcccagtt gagcacatta gacatttata ccaaacctat ctccaagagt ccatgcttct
      841 aatcagaatt cagaactgac ccacaagggt cagcagcaca gaacgccacg tacccgcggg
      901 gaggctggca cacgtgaact agagacctct gcgtgcacag ctgtttccgc agcgatgcgt
      961 tttctcccat ctgtacccac gggggtgact ccagctaact tctctcgtaa acgagagatc
     1021 tctctgtaaa ggagactctt aagcttagct ttgataacgt gcaagtttat tttccataat
     1081 cagaattcga tcattcttgt gactgattca atcccagttc ttaaagaact ctcctttact
     1141 tctgtatatg aagctcatgt gtaccttgga cattcagcaa aatccatatg gaaaagaaat
     1201 aaaatatatt ttgaaaatat ttttcaagaa
//
LOCUS       XM_032609196            5530 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 102
            member B (FAM102B), transcript variant X1, mRNA.
ACCESSION   XM_032609196
VERSION     XM_032609196.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5530
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5530
                     /gene="FAM102B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116741975"
     CDS             368..1453
                     /gene="FAM102B"
                     /codon_start=1
                     /product="protein FAM102B isoform X1"
                     /protein_id="XP_032465087.1"
                     /db_xref="GeneID:116741975"
                     /translation="MMMKKKKFKFKVDFELEELSSVPFVNGVLFCKMRLLDGGSFTAE
                     SPREVVQANCVHWRKKFSFMCKMSASATTGILDPCIYRVSVRKELKGGKAYAKLGFAD
                     LNLAEFAGSGNTTRRCLLEGYDTKNTRQDNSILKVLISMQLMSGDPCFKTPPSTSMSI
                     PIAGESESLEEDRKGGETLKIHLGIADLSAKSASVPDELGACGHSRTSSYASQQSKVS
                     GYSSCHSRSSSFSEFCHRRNTSVGSTSTGIESILEPCDEIEQKIAGPSLDTADKEDTA
                     SETLNRCPVKQDSVESQLKRVDDTRVDADDIVEKILQSQDFSLDSSAEEEGLRLFVGP
                     GGSTTFGSHHLPNRVGSGAYEQVVIKR"
     misc_feature    395..817
                     /gene="FAM102B"
                     /note="N-terminal C2 in EEIG1 and EHBP1 proteins; Region:
                     NT-C2; pfam10358"
                     /db_xref="CDD:463058"
ORIGIN      
        1 ggaggcggcg gcagcggcag cggcggttct cggagcttcg cctcccctcc tcccagacgg
       61 gcggcggcgc cggctgcaag ctgcacaccg aaagggcgcc tcccgctcag gcgagctgca
      121 gcacgaccgc tccccgtggg tgggcggggt ccgcgcaacg gccgccgccg cgctccggcc
      181 ggggctgccg ctagaggcgg cggcggcggc ggcggcggca ccggccccgg cagcgcctac
      241 acgcgcagct cgcagccccg gccatggggc tgggcgggcc cgcggctcag ccgagttgaa
      301 gcggcggcgc cggcccgcgc gccccttggg gccgcccccg caccccgctc gccggcgtct
      361 ggctctcatg atgatgaaga agaagaagtt taagtttaag gtggacttcg agctcgagga
      421 gctctcctcg gtgcccttcg tcaacggggt cctcttctgc aagatgcggc tgctggacgg
      481 cggcagcttc accgccgagt cccccaggga ggtggtgcaa gcaaactgtg ttcactggag
      541 aaagaagttc tcatttatgt gcaaaatgag tgcaagtgcc accacaggca tcctagaccc
      601 ttgtatctac agagtatctg tgaggaagga attaaaaggt ggaaaagctt atgcaaagct
      661 gggctttgca gatctaaacc tggcagagtt tgctggatca ggaaatacca ctcgtcgctg
      721 tttactggaa ggctatgata ccaaaaatac aagacaggat aattccattc ttaaagtttt
      781 aatcagtatg caactgatgt ctggtgaccc atgttttaaa acgcctcctt ctacatcaat
      841 gtctatacca attgctggtg aatctgaatc tctggaagaa gatagaaaag gtggagagac
      901 tctcaaaatt catcttggga tagcagatct ctcagcaaag agtgcctctg ttccagatga
      961 acttggtgcc tgtggacatt ctagaacatc aagctatgca agccagcagt caaaagtatc
     1021 agggtatagc tcttgccact cccggtcatc tagtttctct gagttctgcc acaggagaaa
     1081 tacctccgtg ggaagtacat caacaggaat tgaaagtatt ctagagccat gtgatgaaat
     1141 tgagcaaaag atagctggac caagtcttga tacagctgat aaagaagata cagcttcgga
     1201 aacactcaac agatgcccag tgaaacaaga ttctgtagaa tctcagctga agcgagttga
     1261 tgacaccaga gtggatgcag atgatattgt ggagaaaata ttacaaagtc aagacttcag
     1321 cctagattcc agtgcagaag aagaaggact gaggttattt gtgggtcctg ggggaagtac
     1381 aacctttggc agtcatcatc ttccaaacag ggtggggtct ggagcttatg aacaagttgt
     1441 gatcaaacgc tagaaatcaa gctggtgaac tgaagcttcc ctaggggttt aagatgtggt
     1501 cagttgagct gtcaaggcac tttattcaag cacttatgag aaagtgaacc tattaaaaaa
     1561 aaatgcagca tgttcatcta tcaagaggaa agccaacact gatttcttct ctgaaggtgc
     1621 ccaccactct cctttctcac ccacccacag ggaacatcgg aatggtagta tcagggcagt
     1681 gtgccgcgtg tgcttacagg tacacagctt ctgtggtcac tgcacataat aatgaaaagc
     1741 cgcctttttt tttttcaaaa catccagtgg ggaaaacagc gctatacatc tgagtataat
     1801 tttaatgttg aagtgtaaaa cgtgtgatag aagtgcttga ctgatttggg ctctttttaa
     1861 ttttatgttt gagagacaat aagtgaaaat aatttaaact ctataaactt tgccaagaat
     1921 agatataatt cctgtgaagg aaatcttcca tattatacta tcacggtatt gtactaagtt
     1981 cattcactct ttttgatgca atatttgata taaaatgtgg gtgttcgtga tttgggaagg
     2041 tgttatacta cattttaaac atgtaaaatg cttaattcta aatgtattag tcataaattg
     2101 aataacaaat gtgagttatt taagtctgag atacgtgaat ggtataatgc tactattatg
     2161 cagtatgtat cattacttgt taatattaga tgagctacag aattcccact agcactatat
     2221 gagagaccga agtttaagac tccatattgt taggctacca taagacaccc taatgtaaga
     2281 gctctgttaa cagaataata tctgatggtt tcaggagtca aaatttagaa caacaggagg
     2341 aaaattgtga tatggtcaga aacagagctg ccttttctct gtaagttcag gcttacatga
     2401 aactgaaaat tattccaagg aggtagtgga taaaggacag gggacagcca cttgacatca
     2461 ctgacatgga cccatggttt tctgttttct tctttactgt atcagaaatt agttattttg
     2521 aggcaagaat agaatataac atacatcaaa tagagctttt aaaataagaa tatctgatct
     2581 ggatccagtt aaatagcaca gcagataaac cttaagagtt tttctggtct tacatgacag
     2641 tgtctgtatg gaaagatctt aattttcttg gaatcactca gtcactgaag aaaaatattg
     2701 attctgtaga accagtcatt cccagtcctt tctttcaaaa ccatgtccaa gaaatgtgct
     2761 gtgttagaat tactttggtc taatatttcc atgttggcaa agtcagaggg aaaaatatat
     2821 tatttttttt aatttatttt taatatccag atttagaggt ttgaaaattt ttgaatagtt
     2881 catgttaggg tttttttttt aatatttcaa ggattgggta ttccaaatta attcagtact
     2941 acttttataa atagattgtg atattttttt aaagagataa caccccgttt tagaatatct
     3001 tgaatgttga aagataggat tttctgactc attagtcatg cttttttatt ttttaagatt
     3061 tgttttgaag aaaaaaaatt gacctgaaca ttttagtcta accaaggaaa atattacctt
     3121 aatggtaaag acatgccgtc tgcttataaa caggtgaatt gatccattcg ttatatatca
     3181 tgggaagaaa aaaacaaaga aagtttttaa tagagatgtg aagatattgt ttagagaaat
     3241 atttattatg acgtcttaaa aacatatttt tctattttca aagtattatt tctaggctat
     3301 gttttttatt ggcacttctg cagatgatat tgcagttttg aaagtgataa taaaaactag
     3361 attgtaagtt aggttcagtg aggacatttt tcagatatgt aaaagatgct gtgattaggg
     3421 cactgcccac atcttactca tccttggctg cccttggccc aataccttta tacaagactg
     3481 gctcttggta tttaagatga tgtagcatta ttttttaaga acaaaatgtg gagagatttt
     3541 gaaaatcgtg cctttacaat ttgagcagcc accagataca tcttgcttaa ggtactagta
     3601 agtataacat atgtttagat aagtagaaac attaggaaga aaaaagatga cagtgtccgc
     3661 tttcttcagt gaaagtctgg atttatttta ttctattttg tgttctatca taatactttg
     3721 caatcagatt tcattacagt ccttgaaaat atttgttaaa ggacctaagt gtcttacttt
     3781 ctagtttttc ttagagtata tactagtaat atcttaacca tatagctatt gaaaaaaatc
     3841 tgcttattaa ataccaagtc tacttttggt tccattttga gtttcaaaaa taaatctgaa
     3901 aaattaaatc ttaataaatt ttcaactttt aaatattaaa tattttattt tttttaatat
     3961 taaagtcgaa ttttaaatca cctagtcctg gagaatttgc cgatatataa cattttcttt
     4021 ttctaatctt accctagaga aaaagattga tggtattttt aaagctaagt atttctgatc
     4081 agataatgaa gtgtcttaaa taccttgttt gggggaaaca cagagaccca gtcaggagcc
     4141 cacttcctgt gacttgtgct ggtgaccaag actagagagg atgtgaaggg tagcagaggg
     4201 cagagaaggc cctgggccat tagtttacac tctgatggtt gactccccct ttgcgatggt
     4261 ggtggtgaag gcttctgtat acagacaact aatttggact ggtacttata atctgagaaa
     4321 gtcttggcca agaatcctaa agtccaccaa cccatttcag caaaatacta tcagagtaat
     4381 gatgtcctaa ctagattctt ctgtatatat gctttttggt tttttaaatg gaaaccatga
     4441 gccacagagg tccaccactt agcccatttg ttgctagaag ggaaaaaaaa tctcctacta
     4501 gcctccagtc acccacacat tcaggtatca atgagtttta atatattaaa acatccagaa
     4561 gtatttttag aatttaagat ttccatgcta actagactac cttacaagtt caagctgatg
     4621 gtattattaa atacttcatt gaagttctct gaagttttag gcttccatta tatatgacaa
     4681 tgctctaaaa gatactgggc ttatatgaca gggttgcatt ttattttaac agacctttaa
     4741 ctggggcagt tcagaaatta tgcttggtca gttctcttgg atggtatgtc atgttaatgt
     4801 aacctagtac tgtagttgaa attgtgttgt gccattaccc atgtgttggc ttaggtactg
     4861 tacatagtct taatagctga gatgttaaag aagatgaagt ctaaaaatac aaaggatgaa
     4921 acatgcctat attaacctgt tttaagactg ctttagatat aaaggcctta ttcccttata
     4981 tatgtgactt ttcagaagat agtatataca cagtatattt taaatggtca tgtgggtggt
     5041 ctctagctac tctccatata acaaaactgg caaatttttt tatttacgtg gacaacaaac
     5101 tccacattta caaatgttta tgttcatctt atgcatataa caatgaattc tcttgctgat
     5161 attcattgac caaatcccac atacaggaag acatttacag tatattcagt ttgttttttt
     5221 ggaaatacat cttacttggg ggatcacctt cctcttagac atttatttgg tcctctggaa
     5281 attgatacag ttgtgggtaa tcatgtaaat gtttacgaaa aattttttat tgaagtgatt
     5341 ccatttgtat tctaatctct aatacatgga gaatgacctt catatttata tatttcttta
     5401 ttttaacctc ccagctatta atccaggaaa ttttttcctt ttctttgcca aaacttttta
     5461 ttgtaaaata tttgagtaat gtaaaggtga atcttataca tgttcaataa aaatcatatc
     5521 tttaacttta
//
LOCUS       XM_032609203            5098 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 102
            member B (FAM102B), transcript variant X2, mRNA.
ACCESSION   XM_032609203
VERSION     XM_032609203.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5098
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5098
                     /gene="FAM102B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116741975"
     CDS             125..1021
                     /gene="FAM102B"
                     /codon_start=1
                     /product="protein FAM102B isoform X2"
                     /protein_id="XP_032465094.1"
                     /db_xref="GeneID:116741975"
                     /translation="MCKMSASATTGILDPCIYRVSVRKELKGGKAYAKLGFADLNLAE
                     FAGSGNTTRRCLLEGYDTKNTRQDNSILKVLISMQLMSGDPCFKTPPSTSMSIPIAGE
                     SESLEEDRKGGETLKIHLGIADLSAKSASVPDELGACGHSRTSSYASQQSKVSGYSSC
                     HSRSSSFSEFCHRRNTSVGSTSTGIESILEPCDEIEQKIAGPSLDTADKEDTASETLN
                     RCPVKQDSVESQLKRVDDTRVDADDIVEKILQSQDFSLDSSAEEEGLRLFVGPGGSTT
                     FGSHHLPNRVGSGAYEQVVIKR"
     misc_feature    <128..385
                     /gene="FAM102B"
                     /note="N-terminal C2 in EEIG1 and EHBP1 proteins; Region:
                     NT-C2; pfam10358"
                     /db_xref="CDD:463058"
ORIGIN      
        1 atgaggaatt ttaaacagag gaacgacatt accatatttg tatcttagaa gaagctgtct
       61 ggtaacatga ggaagggagg tggtgcaagc aaactgtgtt cactggagaa agaagttctc
      121 atttatgtgc aaaatgagtg caagtgccac cacaggcatc ctagaccctt gtatctacag
      181 agtatctgtg aggaaggaat taaaaggtgg aaaagcttat gcaaagctgg gctttgcaga
      241 tctaaacctg gcagagtttg ctggatcagg aaataccact cgtcgctgtt tactggaagg
      301 ctatgatacc aaaaatacaa gacaggataa ttccattctt aaagttttaa tcagtatgca
      361 actgatgtct ggtgacccat gttttaaaac gcctccttct acatcaatgt ctataccaat
      421 tgctggtgaa tctgaatctc tggaagaaga tagaaaaggt ggagagactc tcaaaattca
      481 tcttgggata gcagatctct cagcaaagag tgcctctgtt ccagatgaac ttggtgcctg
      541 tggacattct agaacatcaa gctatgcaag ccagcagtca aaagtatcag ggtatagctc
      601 ttgccactcc cggtcatcta gtttctctga gttctgccac aggagaaata cctccgtggg
      661 aagtacatca acaggaattg aaagtattct agagccatgt gatgaaattg agcaaaagat
      721 agctggacca agtcttgata cagctgataa agaagataca gcttcggaaa cactcaacag
      781 atgcccagtg aaacaagatt ctgtagaatc tcagctgaag cgagttgatg acaccagagt
      841 ggatgcagat gatattgtgg agaaaatatt acaaagtcaa gacttcagcc tagattccag
      901 tgcagaagaa gaaggactga ggttatttgt gggtcctggg ggaagtacaa cctttggcag
      961 tcatcatctt ccaaacaggg tggggtctgg agcttatgaa caagttgtga tcaaacgcta
     1021 gaaatcaagc tggtgaactg aagcttccct aggggtttaa gatgtggtca gttgagctgt
     1081 caaggcactt tattcaagca cttatgagaa agtgaaccta ttaaaaaaaa atgcagcatg
     1141 ttcatctatc aagaggaaag ccaacactga tttcttctct gaaggtgccc accactctcc
     1201 tttctcaccc acccacaggg aacatcggaa tggtagtatc agggcagtgt gccgcgtgtg
     1261 cttacaggta cacagcttct gtggtcactg cacataataa tgaaaagccg cctttttttt
     1321 tttcaaaaca tccagtgggg aaaacagcgc tatacatctg agtataattt taatgttgaa
     1381 gtgtaaaacg tgtgatagaa gtgcttgact gatttgggct ctttttaatt ttatgtttga
     1441 gagacaataa gtgaaaataa tttaaactct ataaactttg ccaagaatag atataattcc
     1501 tgtgaaggaa atcttccata ttatactatc acggtattgt actaagttca ttcactcttt
     1561 ttgatgcaat atttgatata aaatgtgggt gttcgtgatt tgggaaggtg ttatactaca
     1621 ttttaaacat gtaaaatgct taattctaaa tgtattagtc ataaattgaa taacaaatgt
     1681 gagttattta agtctgagat acgtgaatgg tataatgcta ctattatgca gtatgtatca
     1741 ttacttgtta atattagatg agctacagaa ttcccactag cactatatga gagaccgaag
     1801 tttaagactc catattgtta ggctaccata agacacccta atgtaagagc tctgttaaca
     1861 gaataatatc tgatggtttc aggagtcaaa atttagaaca acaggaggaa aattgtgata
     1921 tggtcagaaa cagagctgcc ttttctctgt aagttcaggc ttacatgaaa ctgaaaatta
     1981 ttccaaggag gtagtggata aaggacaggg gacagccact tgacatcact gacatggacc
     2041 catggttttc tgttttcttc tttactgtat cagaaattag ttattttgag gcaagaatag
     2101 aatataacat acatcaaata gagcttttaa aataagaata tctgatctgg atccagttaa
     2161 atagcacagc agataaacct taagagtttt tctggtctta catgacagtg tctgtatgga
     2221 aagatcttaa ttttcttgga atcactcagt cactgaagaa aaatattgat tctgtagaac
     2281 cagtcattcc cagtcctttc tttcaaaacc atgtccaaga aatgtgctgt gttagaatta
     2341 ctttggtcta atatttccat gttggcaaag tcagagggaa aaatatatta ttttttttaa
     2401 tttattttta atatccagat ttagaggttt gaaaattttt gaatagttca tgttagggtt
     2461 ttttttttaa tatttcaagg attgggtatt ccaaattaat tcagtactac ttttataaat
     2521 agattgtgat atttttttaa agagataaca ccccgtttta gaatatcttg aatgttgaaa
     2581 gataggattt tctgactcat tagtcatgct tttttatttt ttaagatttg ttttgaagaa
     2641 aaaaaattga cctgaacatt ttagtctaac caaggaaaat attaccttaa tggtaaagac
     2701 atgccgtctg cttataaaca ggtgaattga tccattcgtt atatatcatg ggaagaaaaa
     2761 aacaaagaaa gtttttaata gagatgtgaa gatattgttt agagaaatat ttattatgac
     2821 gtcttaaaaa catatttttc tattttcaaa gtattatttc taggctatgt tttttattgg
     2881 cacttctgca gatgatattg cagttttgaa agtgataata aaaactagat tgtaagttag
     2941 gttcagtgag gacatttttc agatatgtaa aagatgctgt gattagggca ctgcccacat
     3001 cttactcatc cttggctgcc cttggcccaa tacctttata caagactggc tcttggtatt
     3061 taagatgatg tagcattatt ttttaagaac aaaatgtgga gagattttga aaatcgtgcc
     3121 tttacaattt gagcagccac cagatacatc ttgcttaagg tactagtaag tataacatat
     3181 gtttagataa gtagaaacat taggaagaaa aaagatgaca gtgtccgctt tcttcagtga
     3241 aagtctggat ttattttatt ctattttgtg ttctatcata atactttgca atcagatttc
     3301 attacagtcc ttgaaaatat ttgttaaagg acctaagtgt cttactttct agtttttctt
     3361 agagtatata ctagtaatat cttaaccata tagctattga aaaaaatctg cttattaaat
     3421 accaagtcta cttttggttc cattttgagt ttcaaaaata aatctgaaaa attaaatctt
     3481 aataaatttt caacttttaa atattaaata ttttattttt tttaatatta aagtcgaatt
     3541 ttaaatcacc tagtcctgga gaatttgccg atatataaca ttttcttttt ctaatcttac
     3601 cctagagaaa aagattgatg gtatttttaa agctaagtat ttctgatcag ataatgaagt
     3661 gtcttaaata ccttgtttgg gggaaacaca gagacccagt caggagccca cttcctgtga
     3721 cttgtgctgg tgaccaagac tagagaggat gtgaagggta gcagagggca gagaaggccc
     3781 tgggccatta gtttacactc tgatggttga ctcccccttt gcgatggtgg tggtgaaggc
     3841 ttctgtatac agacaactaa tttggactgg tacttataat ctgagaaagt cttggccaag
     3901 aatcctaaag tccaccaacc catttcagca aaatactatc agagtaatga tgtcctaact
     3961 agattcttct gtatatatgc tttttggttt tttaaatgga aaccatgagc cacagaggtc
     4021 caccacttag cccatttgtt gctagaaggg aaaaaaaatc tcctactagc ctccagtcac
     4081 ccacacattc aggtatcaat gagttttaat atattaaaac atccagaagt atttttagaa
     4141 tttaagattt ccatgctaac tagactacct tacaagttca agctgatggt attattaaat
     4201 acttcattga agttctctga agttttaggc ttccattata tatgacaatg ctctaaaaga
     4261 tactgggctt atatgacagg gttgcatttt attttaacag acctttaact ggggcagttc
     4321 agaaattatg cttggtcagt tctcttggat ggtatgtcat gttaatgtaa cctagtactg
     4381 tagttgaaat tgtgttgtgc cattacccat gtgttggctt aggtactgta catagtctta
     4441 atagctgaga tgttaaagaa gatgaagtct aaaaatacaa aggatgaaac atgcctatat
     4501 taacctgttt taagactgct ttagatataa aggccttatt cccttatata tgtgactttt
     4561 cagaagatag tatatacaca gtatatttta aatggtcatg tgggtggtct ctagctactc
     4621 tccatataac aaaactggca aattttttta tttacgtgga caacaaactc cacatttaca
     4681 aatgtttatg ttcatcttat gcatataaca atgaattctc ttgctgatat tcattgacca
     4741 aatcccacat acaggaagac atttacagta tattcagttt gtttttttgg aaatacatct
     4801 tacttggggg atcaccttcc tcttagacat ttatttggtc ctctggaaat tgatacagtt
     4861 gtgggtaatc atgtaaatgt ttacgaaaaa ttttttattg aagtgattcc atttgtattc
     4921 taatctctaa tacatggaga atgaccttca tatttatata tttctttatt ttaacctccc
     4981 agctattaat ccaggaaatt ttttcctttt ctttgccaaa actttttatt gtaaaatatt
     5041 tgagtaatgt aaaggtgaat cttatacatg ttcaataaaa atcatatctt taacttta
//
LOCUS       XM_032609226            2599 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of chromosome condensation 1
            (RCC1), transcript variant X1, mRNA.
ACCESSION   XM_032609226
VERSION     XM_032609226.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2599
                     /gene="RCC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741992"
     CDS             59..1390
                     /gene="RCC1"
                     /codon_start=1
                     /product="regulator of chromosome condensation isoform X1"
                     /protein_id="XP_032465117.1"
                     /db_xref="GeneID:116741992"
                     /translation="MPPKRITKRRSPPEDALPKSKKVKDPGNQAVRVVASRRVPGARS
                     CQVSHRSHNTEPGLVLTLGQGDVGQLGLGENVMERKKPALVPILEDIVQAEAGGMHTV
                     CLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVIQVSAGDSHTAALTEDG
                     RVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLSTPVVKVASGNDHLVMLTVDGDLCTL
                     GCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFA
                     ISSEGHVYGFGLSNYHQLGTPGTESCFVPQNLTSFRNSTKSWVGFSGGQHHTVCMDSE
                     GRAYSLGRAEYGRLGLGEGAEEKSVPTLISRLPAVSTVACGASVGYAVTKDGRVFAWG
                     MGTNYQLGTGQEEDVWSPVEMTGKQLENRVVLSVSSGGQHTVLLVKDKEQS"
     misc_feature    218..1291
                     /gene="RCC1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; Region:
                     ATS1; COG5184"
                     /db_xref="CDD:444065"
ORIGIN      
        1 cggccgggcc ggggagcgga ggagttcctt gtggccgacc tgcagcgagg acaggaagat
       61 gccacccaag cgtataacta agagaaggtc accccccgaa gatgccctcc ccaaaagcaa
      121 gaaggtgaag gaccctggta accaggcagt gagggtcgtt gcctcccgcc gcgttccagg
      181 cgcccgctcc tgccaagtct cacataggtc ccacaacaca gaaccgggtt tggtgctgac
      241 gctgggccag ggcgacgtgg gccagctggg gctgggcgag aatgtgatgg agaggaagaa
      301 gccagccctg gtgcccattc tagaggacat cgtgcaagct gaggctgggg gcatgcacac
      361 tgtgtgtcta agcaaaagtg gccaggtcta ctccttcggc tgcaatgatg agggtgccct
      421 gggaagggac acatcagtgg agggctcaga gatggtccct gggaaagtgg aactgcaaga
      481 gaaggtgata caggtgtcag caggagacag tcacacagcg gccctcaccg aggatggccg
      541 tgtcttcctt tggggctcct tccgggacaa taacggtgtg atcgggctct tggagcccat
      601 gaaaaagagc atggtgcctg tgcaggtgca gctgagtacg cccgtggtga aggtggcctc
      661 aggaaacgac cacttggtga tgctgacagt tgatggcgac ctctgtactt tgggctgcgg
      721 ggagcagggc caactgggcc gcgtgcctga attatttgct aatcgtggtg gccggcaggg
      781 cctcgaacga ctcctggtcc ccaagtgtgt gatgctgaaa tccaggggaa gccggggcca
      841 tgtcagattc caggatgcct tctgtggtgc ctacttcacc tttgccatct cctctgaggg
      901 ccatgtatat ggctttggcc tctccaacta ccatcagcta ggaaccccag gcacagaatc
      961 ttgctttgta cctcagaacc tgacgtcctt caggaactcc acgaagtcct gggtgggctt
     1021 ctctggtggc cagcaccata cagtctgcat ggattcagaa ggaagagcat acagcctggg
     1081 ccgggctgag tatgggcggc tgggccttgg ggaaggtgcc gaggagaaga gcgtacccac
     1141 cctcatctcc aggctgcccg ccgtctccac ggtggcttgt ggggcctctg tgggatatgc
     1201 tgtgaccaag gatggtcgtg tttttgcctg gggcatgggc accaactacc agctgggcac
     1261 aggacaggaa gaggatgtct ggagccccgt ggagatgaca ggcaaacagt tggagaaccg
     1321 tgtggtctta tctgtgtcca gcgggggcca gcacacagtc ttactagtca aggacaagga
     1381 acagagttga tgaagcgtct gagggcctgg tttccggccc ccccacctcc ctcctggaac
     1441 aagcaagcca tgatgtctac atattccagc aggcctcttc cagctccaag tactctgtca
     1501 tctcctgcct ttctcccatc agcagaacag aatgcttctc ttttttttcc ctcctgttcc
     1561 ggaatcatcc tgggacctac aggatgaggg tgggatagat ggaagagggg agggggtttt
     1621 aatcagaagg aacattgctg accccacagc tatgtggtta gacctttccc cctcatccct
     1681 acttcccctg gtcctggctg accctggttt tgcctatcaa aaaccaaaac ttcctctcct
     1741 gcgtgtttgg tgcccatact ctgagaagtc ggggctctgc caagccctgc tctagtcatg
     1801 tgccactctt cctgtccttc acaacccaca gacaaacggt acagtcctga gacccagctg
     1861 tcatggacct acgcctgggg aaactggaga aggggcaggg ctacccagcc atgggcaacc
     1921 ccaagccaaa tatttggccc tgaacaggtg cccatggggc aaaaagaaaa acagtgatcc
     1981 tccgctggat caagaaaaaa gccagtcagc ctttctccca gaagcacaga gcattctgcc
     2041 cttcaggcct tgtctgccga gtctcaccca tccaacctgc ctcacctgca agccaagggc
     2101 ctgaactcca gaaaggaagc tatgcctgca gggcaggacc tcggggagag gggaaggagg
     2161 gctttataag caaacttaca gcaatattga gaatgaaggg agggcaggga agagggttgg
     2221 aggggcagag actggtcccc agaaagggaa gcagtagctt gtacagaggc tgaaaaaata
     2281 gaagagagta ttgatttttt ttttaatgta aagtattttg gaggggagag tgaaatcttt
     2341 taacactttg aataaattta gagttttata aaacaggcca cttgttttct acatgctccc
     2401 tgctttttta agggagcacc tgctgtgttg ggatgggcag aataacccca tgcctgtagc
     2461 cctggtgaag actagggctt caggggtgtc aagaggtcct ggtgtgtgcc agtcagctgc
     2521 ggtttttttt tttgtttttt gtatggaaca gtggctgttc tagacaaata aaaaaaagtt
     2581 gattgatttt tgttaggta
//
LOCUS       XM_032609235            2344 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of chromosome condensation 1
            (RCC1), transcript variant X2, mRNA.
ACCESSION   XM_032609235
VERSION     XM_032609235.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2344
                     /gene="RCC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 15
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116741992"
     CDS             93..1358
                     /gene="RCC1"
                     /codon_start=1
                     /product="regulator of chromosome condensation isoform X2"
                     /protein_id="XP_032465126.1"
                     /db_xref="GeneID:116741992"
                     /translation="MPPKRITKRRSPPEDALPKSKKVKVSHRSHNTEPGLVLTLGQGD
                     VGQLGLGENVMERKKPALVPILEDIVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD
                     TSVEGSEMVPGKVELQEKVIQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMK
                     KSMVPVQVQLSTPVVKVASGNDHLVMLTVDGDLCTLGCGEQGQLGRVPELFANRGGRQ
                     GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISSEGHVYGFGLSNYHQLGTPG
                     TESCFVPQNLTSFRNSTKSWVGFSGGQHHTVCMDSEGRAYSLGRAEYGRLGLGEGAEE
                     KSVPTLISRLPAVSTVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQEEDVWSPVEMT
                     GKQLENRVVLSVSSGGQHTVLLVKDKEQS"
     misc_feature    186..1259
                     /gene="RCC1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; Region:
                     ATS1; COG5184"
                     /db_xref="CDD:444065"
ORIGIN      
        1 gaggcctgta gagcgcatgc tctggggcag ttcgcggccg ggccggggag cggaggagtt
       61 ccttgtggcc gacctgcagc gaggacagga agatgccacc caagcgtata actaagagaa
      121 ggtcaccccc cgaagatgcc ctccccaaaa gcaagaaggt gaaggtctca cataggtccc
      181 acaacacaga accgggtttg gtgctgacgc tgggccaggg cgacgtgggc cagctggggc
      241 tgggcgagaa tgtgatggag aggaagaagc cagccctggt gcccattcta gaggacatcg
      301 tgcaagctga ggctgggggc atgcacactg tgtgtctaag caaaagtggc caggtctact
      361 ccttcggctg caatgatgag ggtgccctgg gaagggacac atcagtggag ggctcagaga
      421 tggtccctgg gaaagtggaa ctgcaagaga aggtgataca ggtgtcagca ggagacagtc
      481 acacagcggc cctcaccgag gatggccgtg tcttcctttg gggctccttc cgggacaata
      541 acggtgtgat cgggctcttg gagcccatga aaaagagcat ggtgcctgtg caggtgcagc
      601 tgagtacgcc cgtggtgaag gtggcctcag gaaacgacca cttggtgatg ctgacagttg
      661 atggcgacct ctgtactttg ggctgcgggg agcagggcca actgggccgc gtgcctgaat
      721 tatttgctaa tcgtggtggc cggcagggcc tcgaacgact cctggtcccc aagtgtgtga
      781 tgctgaaatc caggggaagc cggggccatg tcagattcca ggatgccttc tgtggtgcct
      841 acttcacctt tgccatctcc tctgagggcc atgtatatgg ctttggcctc tccaactacc
      901 atcagctagg aaccccaggc acagaatctt gctttgtacc tcagaacctg acgtccttca
      961 ggaactccac gaagtcctgg gtgggcttct ctggtggcca gcaccataca gtctgcatgg
     1021 attcagaagg aagagcatac agcctgggcc gggctgagta tgggcggctg ggccttgggg
     1081 aaggtgccga ggagaagagc gtacccaccc tcatctccag gctgcccgcc gtctccacgg
     1141 tggcttgtgg ggcctctgtg ggatatgctg tgaccaagga tggtcgtgtt tttgcctggg
     1201 gcatgggcac caactaccag ctgggcacag gacaggaaga ggatgtctgg agccccgtgg
     1261 agatgacagg caaacagttg gagaaccgtg tggtcttatc tgtgtccagc gggggccagc
     1321 acacagtctt actagtcaag gacaaggaac agagttgatg aagcgtctga gggcctggtt
     1381 tccggccccc ccacctccct cctggaacaa gcaagccatg atgtctacat attccagcag
     1441 gcctcttcca gctccaagta ctctgtcatc tcctgccttt ctcccatcag cagaacagaa
     1501 tgcttctctt ttttttccct cctgttccgg aatcatcctg ggacctacag gatgagggtg
     1561 ggatagatgg aagaggggag ggggttttaa tcagaaggaa cattgctgac cccacagcta
     1621 tgtggttaga cctttccccc tcatccctac ttcccctggt cctggctgac cctggttttg
     1681 cctatcaaaa accaaaactt cctctcctgc gtgtttggtg cccatactct gagaagtcgg
     1741 ggctctgcca agccctgctc tagtcatgtg ccactcttcc tgtccttcac aacccacaga
     1801 caaacggtac agtcctgaga cccagctgtc atggacctac gcctggggaa actggagaag
     1861 gggcagggct acccagccat gggcaacccc aagccaaata tttggccctg aacaggtgcc
     1921 catggggcaa aaagaaaaac agtgatcctc cgctggatca agaaaaaagc cagtcagcct
     1981 ttctcccaga agcacagagc attctgccct tcaggccttg tctgccgagt ctcacccatc
     2041 caacctgcct cacctgcaag ccaagggcct gaactccaga aaggaagcta tgcctgcagg
     2101 gcaggacctc ggggagaggg gaaggagggc tttataagca aacttacagc aatattgaga
     2161 atgaagggag ggcagggaag agggttggag gggcagagac tggtccccag aaagggaagc
     2221 agtagcttgt acagaggctg aaaaaataga agagagtatt gatttttttt ttaatgtaaa
     2281 gtattttgga ggggagagtg aaatctttta acactttgaa taaatttaga gttttataaa
     2341 acag
//
LOCUS       XM_032609244            1309 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of chromosome condensation 1
            (RCC1), transcript variant X3, mRNA.
ACCESSION   XM_032609244
VERSION     XM_032609244.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1309
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1309
                     /gene="RCC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116741992"
     CDS             44..1309
                     /gene="RCC1"
                     /codon_start=1
                     /product="regulator of chromosome condensation isoform X2"
                     /protein_id="XP_032465135.1"
                     /db_xref="GeneID:116741992"
                     /translation="MPPKRITKRRSPPEDALPKSKKVKVSHRSHNTEPGLVLTLGQGD
                     VGQLGLGENVMERKKPALVPILEDIVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD
                     TSVEGSEMVPGKVELQEKVIQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMK
                     KSMVPVQVQLSTPVVKVASGNDHLVMLTVDGDLCTLGCGEQGQLGRVPELFANRGGRQ
                     GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISSEGHVYGFGLSNYHQLGTPG
                     TESCFVPQNLTSFRNSTKSWVGFSGGQHHTVCMDSEGRAYSLGRAEYGRLGLGEGAEE
                     KSVPTLISRLPAVSTVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQEEDVWSPVEMT
                     GKQLENRVVLSVSSGGQHTVLLVKDKEQS"
     misc_feature    137..1210
                     /gene="RCC1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; Region:
                     ATS1; COG5184"
                     /db_xref="CDD:444065"
ORIGIN      
        1 gcaccgtcac gacgactgtt gaccggttgg agaggacagg aagatgccac ccaagcgtat
       61 aactaagaga aggtcacccc ccgaagatgc cctccccaaa agcaagaagg tgaaggtctc
      121 acataggtcc cacaacacag aaccgggttt ggtgctgacg ctgggccagg gcgacgtggg
      181 ccagctgggg ctgggcgaga atgtgatgga gaggaagaag ccagccctgg tgcccattct
      241 agaggacatc gtgcaagctg aggctggggg catgcacact gtgtgtctaa gcaaaagtgg
      301 ccaggtctac tccttcggct gcaatgatga gggtgccctg ggaagggaca catcagtgga
      361 gggctcagag atggtccctg ggaaagtgga actgcaagag aaggtgatac aggtgtcagc
      421 aggagacagt cacacagcgg ccctcaccga ggatggccgt gtcttccttt ggggctcctt
      481 ccgggacaat aacggtgtga tcgggctctt ggagcccatg aaaaagagca tggtgcctgt
      541 gcaggtgcag ctgagtacgc ccgtggtgaa ggtggcctca ggaaacgacc acttggtgat
      601 gctgacagtt gatggcgacc tctgtacttt gggctgcggg gagcagggcc aactgggccg
      661 cgtgcctgaa ttatttgcta atcgtggtgg ccggcagggc ctcgaacgac tcctggtccc
      721 caagtgtgtg atgctgaaat ccaggggaag ccggggccat gtcagattcc aggatgcctt
      781 ctgtggtgcc tacttcacct ttgccatctc ctctgagggc catgtatatg gctttggcct
      841 ctccaactac catcagctag gaaccccagg cacagaatct tgctttgtac ctcagaacct
      901 gacgtccttc aggaactcca cgaagtcctg ggtgggcttc tctggtggcc agcaccatac
      961 agtctgcatg gattcagaag gaagagcata cagcctgggc cgggctgagt atgggcggct
     1021 gggccttggg gaaggtgccg aggagaagag cgtacccacc ctcatctcca ggctgcccgc
     1081 cgtctccacg gtggcttgtg gggcctctgt gggatatgct gtgaccaagg atggtcgtgt
     1141 ttttgcctgg ggcatgggca ccaactacca gctgggcaca ggacaggaag aggatgtctg
     1201 gagccccgtg gagatgacag gcaaacagtt ggagaaccgt gtggtcttat ctgtgtccag
     1261 cgggggccag cacacagtct tactagtcaa ggacaaggaa cagagttga
//
LOCUS       XM_032609253            1392 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of chromosome condensation 1
            (RCC1), transcript variant X4, mRNA.
ACCESSION   XM_032609253
VERSION     XM_032609253.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1392
                     /gene="RCC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116741992"
     CDS             127..1392
                     /gene="RCC1"
                     /codon_start=1
                     /product="regulator of chromosome condensation isoform X2"
                     /protein_id="XP_032465144.1"
                     /db_xref="GeneID:116741992"
                     /translation="MPPKRITKRRSPPEDALPKSKKVKVSHRSHNTEPGLVLTLGQGD
                     VGQLGLGENVMERKKPALVPILEDIVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD
                     TSVEGSEMVPGKVELQEKVIQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMK
                     KSMVPVQVQLSTPVVKVASGNDHLVMLTVDGDLCTLGCGEQGQLGRVPELFANRGGRQ
                     GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISSEGHVYGFGLSNYHQLGTPG
                     TESCFVPQNLTSFRNSTKSWVGFSGGQHHTVCMDSEGRAYSLGRAEYGRLGLGEGAEE
                     KSVPTLISRLPAVSTVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQEEDVWSPVEMT
                     GKQLENRVVLSVSSGGQHTVLLVKDKEQS"
     misc_feature    220..1293
                     /gene="RCC1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; Region:
                     ATS1; COG5184"
                     /db_xref="CDD:444065"
ORIGIN      
        1 ccttggcgga gctcgcggtc tccctgggga ggcccatgtg gggccatact tacggtccag
       61 ggcgatccct gaagtgtgcc cgtggatccg gggcgctgct ggcggatatt aacagaggac
      121 aggaagatgc cacccaagcg tataactaag agaaggtcac cccccgaaga tgccctcccc
      181 aaaagcaaga aggtgaaggt ctcacatagg tcccacaaca cagaaccggg tttggtgctg
      241 acgctgggcc agggcgacgt gggccagctg gggctgggcg agaatgtgat ggagaggaag
      301 aagccagccc tggtgcccat tctagaggac atcgtgcaag ctgaggctgg gggcatgcac
      361 actgtgtgtc taagcaaaag tggccaggtc tactccttcg gctgcaatga tgagggtgcc
      421 ctgggaaggg acacatcagt ggagggctca gagatggtcc ctgggaaagt ggaactgcaa
      481 gagaaggtga tacaggtgtc agcaggagac agtcacacag cggccctcac cgaggatggc
      541 cgtgtcttcc tttggggctc cttccgggac aataacggtg tgatcgggct cttggagccc
      601 atgaaaaaga gcatggtgcc tgtgcaggtg cagctgagta cgcccgtggt gaaggtggcc
      661 tcaggaaacg accacttggt gatgctgaca gttgatggcg acctctgtac tttgggctgc
      721 ggggagcagg gccaactggg ccgcgtgcct gaattatttg ctaatcgtgg tggccggcag
      781 ggcctcgaac gactcctggt ccccaagtgt gtgatgctga aatccagggg aagccggggc
      841 catgtcagat tccaggatgc cttctgtggt gcctacttca cctttgccat ctcctctgag
      901 ggccatgtat atggctttgg cctctccaac taccatcagc taggaacccc aggcacagaa
      961 tcttgctttg tacctcagaa cctgacgtcc ttcaggaact ccacgaagtc ctgggtgggc
     1021 ttctctggtg gccagcacca tacagtctgc atggattcag aaggaagagc atacagcctg
     1081 ggccgggctg agtatgggcg gctgggcctt ggggaaggtg ccgaggagaa gagcgtaccc
     1141 accctcatct ccaggctgcc cgccgtctcc acggtggctt gtggggcctc tgtgggatat
     1201 gctgtgacca aggatggtcg tgtttttgcc tggggcatgg gcaccaacta ccagctgggc
     1261 acaggacagg aagaggatgt ctggagcccc gtggagatga caggcaaaca gttggagaac
     1321 cgtgtggtct tatctgtgtc cagcgggggc cagcacacag tcttactagt caaggacaag
     1381 gaacagagtt ga
//
LOCUS       XM_032609261            2353 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulator of chromosome condensation 1
            (RCC1), transcript variant X5, mRNA.
ACCESSION   XM_032609261
VERSION     XM_032609261.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2353
                     /gene="RCC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116741992"
     CDS             59..1144
                     /gene="RCC1"
                     /codon_start=1
                     /product="regulator of chromosome condensation isoform X3"
                     /protein_id="XP_032465152.1"
                     /db_xref="GeneID:116741992"
                     /translation="MPPKRITKRRSPPEDALPKSKKVKVSHRSHNTEPGLVLTLGQGD
                     VGQLGLGENVMERKKPALVPILEDIVQAEAGGMHTVCLSKSGQDNNGVIGLLEPMKKS
                     MVPVQVQLSTPVVKVASGNDHLVMLTVDGDLCTLGCGEQGQLGRVPELFANRGGRQGL
                     ERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISSEGHVYGFGLSNYHQLGTPGTE
                     SCFVPQNLTSFRNSTKSWVGFSGGQHHTVCMDSEGRAYSLGRAEYGRLGLGEGAEEKS
                     VPTLISRLPAVSTVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQEEDVWSPVEMTGK
                     QLENRVVLSVSSGGQHTVLLVKDKEQS"
     misc_feature    152..1129
                     /gene="RCC1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; Region:
                     ATS1; COG5184"
                     /db_xref="CDD:444065"
ORIGIN      
        1 cggccgggcc ggggagcgga ggagttcctt gtggccgacc tgcagcgagg acaggaagat
       61 gccacccaag cgtataacta agagaaggtc accccccgaa gatgccctcc ccaaaagcaa
      121 gaaggtgaag gtctcacata ggtcccacaa cacagaaccg ggtttggtgc tgacgctggg
      181 ccagggcgac gtgggccagc tggggctggg cgagaatgtg atggagagga agaagccagc
      241 cctggtgccc attctagagg acatcgtgca agctgaggct gggggcatgc acactgtgtg
      301 tctaagcaaa agtggccagg acaataacgg tgtgatcggg ctcttggagc ccatgaaaaa
      361 gagcatggtg cctgtgcagg tgcagctgag tacgcccgtg gtgaaggtgg cctcaggaaa
      421 cgaccacttg gtgatgctga cagttgatgg cgacctctgt actttgggct gcggggagca
      481 gggccaactg ggccgcgtgc ctgaattatt tgctaatcgt ggtggccggc agggcctcga
      541 acgactcctg gtccccaagt gtgtgatgct gaaatccagg ggaagccggg gccatgtcag
      601 attccaggat gccttctgtg gtgcctactt cacctttgcc atctcctctg agggccatgt
      661 atatggcttt ggcctctcca actaccatca gctaggaacc ccaggcacag aatcttgctt
      721 tgtacctcag aacctgacgt ccttcaggaa ctccacgaag tcctgggtgg gcttctctgg
      781 tggccagcac catacagtct gcatggattc agaaggaaga gcatacagcc tgggccgggc
      841 tgagtatggg cggctgggcc ttggggaagg tgccgaggag aagagcgtac ccaccctcat
      901 ctccaggctg cccgccgtct ccacggtggc ttgtggggcc tctgtgggat atgctgtgac
      961 caaggatggt cgtgtttttg cctggggcat gggcaccaac taccagctgg gcacaggaca
     1021 ggaagaggat gtctggagcc ccgtggagat gacaggcaaa cagttggaga accgtgtggt
     1081 cttatctgtg tccagcgggg gccagcacac agtcttacta gtcaaggaca aggaacagag
     1141 ttgatgaagc gtctgagggc ctggtttccg gcccccccac ctccctcctg gaacaagcaa
     1201 gccatgatgt ctacatattc cagcaggcct cttccagctc caagtactct gtcatctcct
     1261 gcctttctcc catcagcaga acagaatgct tctctttttt ttccctcctg ttccggaatc
     1321 atcctgggac ctacaggatg agggtgggat agatggaaga ggggaggggg ttttaatcag
     1381 aaggaacatt gctgacccca cagctatgtg gttagacctt tccccctcat ccctacttcc
     1441 cctggtcctg gctgaccctg gttttgccta tcaaaaacca aaacttcctc tcctgcgtgt
     1501 ttggtgccca tactctgaga agtcggggct ctgccaagcc ctgctctagt catgtgccac
     1561 tcttcctgtc cttcacaacc cacagacaaa cggtacagtc ctgagaccca gctgtcatgg
     1621 acctacgcct ggggaaactg gagaaggggc agggctaccc agccatgggc aaccccaagc
     1681 caaatatttg gccctgaaca ggtgcccatg gggcaaaaag aaaaacagtg atcctccgct
     1741 ggatcaagaa aaaagccagt cagcctttct cccagaagca cagagcattc tgcccttcag
     1801 gccttgtctg ccgagtctca cccatccaac ctgcctcacc tgcaagccaa gggcctgaac
     1861 tccagaaagg aagctatgcc tgcagggcag gacctcgggg agaggggaag gagggcttta
     1921 taagcaaact tacagcaata ttgagaatga agggagggca gggaagaggg ttggaggggc
     1981 agagactggt ccccagaaag ggaagcagta gcttgtacag aggctgaaaa aatagaagag
     2041 agtattgatt ttttttttaa tgtaaagtat tttggagggg agagtgaaat cttttaacac
     2101 tttgaataaa tttagagttt tataaaacag gccacttgtt ttctacatgc tccctgcttt
     2161 tttaagggag cacctgctgt gttgggatgg gcagaataac cccatgcctg tagccctggt
     2221 gaagactagg gcttcagggg tgtcaagagg tcctggtgtg tgccagtcag ctgcggtttt
     2281 tttttttgtt ttttgtatgg aacagtggct gttctagaca aataaaaaaa agttgattga
     2341 tttttgttag gta
//
LOCUS       XM_032609275            3299 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 30
            (CCDC30), transcript variant X1, mRNA.
ACCESSION   XM_032609275
VERSION     XM_032609275.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3299
                     /gene="CCDC30"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742016"
     CDS             720..3014
                     /gene="CCDC30"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 30 isoform
                     X1"
                     /protein_id="XP_032465166.1"
                     /db_xref="GeneID:116742016"
                     /translation="MEEIKEVENYANRVCNLPEEKEAFSHGYEKENKQPRHEFKGLQL
                     KPEVQIKEVEILYQEGLSEIALSSPSEQIAHLLMERSTPLRKLERGDPQPESQRCLSS
                     NLQKEFPQEKFEQTHQPLQREHQKHQELVHQSKKSLSESHDEDPEKSKISQNCREKDM
                     EQVTRRLGMAHEEIRRLTDELQGKEKEQSKLDSALEKSQLEIEKLKENLIKLKENDSV
                     DLRKAKEHNQRLDEEILALRNRVRSLDSERKVLGEEVERLKGEICESQENKQLGNHSP
                     GKMNPSSGEKRKHQQQEELQQLRQNLHRLQILCNSAEKELRYERGKNLDLKQHNSLLQ
                     EESIKIKIELKQAQQKLLDSAKMCSSLTAEWKHCQQKIKELELEVLKQAQSIRSQNNL
                     QENLAQEKSRVADAEEKILDLQQKLEHAHRVCLTDTCILGRKQLEERIKEAIENEAKI
                     KQQYQEEQQKRKLLDQNMNELQKQVKILKDKENQLEMTSSQQQSRIQQLEAQLKQLEN
                     EKRKSDEHLKSNQELSEKLSALQQEKEALREEYGQFLKRLDVHVRNYNEKHHHHKAKL
                     RRVKDRLVHEVELRDERIKQLENEIGALQQQMEKEKAFQDQITTQNDILLLEKRKLLE
                     QLTEQEELIHGNKWIISSVQSRVLFLDKENKQLQENSLRLTQQVGLLERIIRSIQIRR
                     GEETISDIPEFEVLNKIVPLPNSSFSGMGLIESAGSLQETEEHRSEEAMVNTKSLESL
                     SCSQNSEAGYINVASLKEIHHIQE"
     misc_feature    <1086..>1496
                     /gene="CCDC30"
                     /note="Possible nuclease of RNase H fold, RuvC/YqgF family
                     [General function prediction only]; Region: COG2433"
                     /db_xref="CDD:441980"
     misc_feature    1560..2711
                     /gene="CCDC30"
                     /note="Domain of unknown function (DUF4686); Region:
                     DUF4686; pfam15742"
                     /db_xref="CDD:464838"
ORIGIN      
        1 aaaggacaat ttccggcctg gttcctgagg ttcccgccgc agccccaagg agaaaagcag
       61 ctattctccg ctcttttttt tttttttttt tagcattccg ggtctttccc gcttttctgc
      121 ccagcaggac ctgaaacgac agaagagact cacctggctt ggcctttctc tgcctaagga
      181 tggattcgcc ggtttcccgg gacccacccg ccgcaggcct ttagaattag gctgctgctt
      241 ttatttaaag agggcttaga accctcagtc tgttaagtag acgttctttt tctcactttc
      301 caggcgaaga cacccctgca cagagactgc atctgaaggg ccaggccatg acaaagtcca
      361 ccgagccacg gattcccctg gttgtcggcc tgtgaacaaa gaactgccgt tttcgccgtt
      421 ttgccctatg ttcgccatgc agaactttaa ttcccgatga agctccggag gcattttgta
      481 tcctcaacat caggcgtcat caaatcgagc tggagcttag cagagatgga ttattattta
      541 atcctcctaa caacccaatg agggaaaagt tcaattagaa gacttacttc accatcttga
      601 gaaagaaggg attgaactcc ttgcctttac agaagaacaa tactttgtct ggtgcttgtt
      661 acagcaaaga caggctgagg actgctacca gaaatctaga agagctgtca gggaagcaca
      721 tggaagaaat taaagaagta gaaaattatg caaaccgtgt ctgtaactta ccagaggaaa
      781 aggaagcatt ttctcatggt tacgaaaagg aaaacaagca gcctagacat gagtttaaag
      841 ggctccaact caaaccggaa gtgcaaataa aggaggtcga aatattgtat caagaaggct
      901 tgtctgaaat agctctgagc agccctagtg aacagattgc acacttactc atggaaagaa
      961 gtacaccctt gaggaaactg gaacgagggg atccccaacc agaatcacaa agatgtctga
     1021 gcagtaacct acagaaagaa tttccccagg agaaatttga acaaactcac cagcctctgc
     1081 aaagggaaca tcagaaacat caagaacttg tgcatcagtc taaaaaaagt ctgagtgagt
     1141 cccatgatga agacccagaa aaaagtaaaa tatcacaaaa ctgcagagag aaagatatgg
     1201 aacaagtaac aaggaggtta gggatggccc atgaagagat ccgaaggctc actgatgaac
     1261 tgcaagggaa ggagaaagaa cagagtaaat tagattctgc acttgagaag tctcaactag
     1321 aaattgagaa attgaaagaa aatttgataa agctgaaaga aaatgactca gttgacctac
     1381 ggaaagcaaa ggaacataat cagagactgg atgaggaaat tctggcttta agaaatcgag
     1441 ttcgatcact tgactcagaa agaaaggtac ttggcgaaga ggttgaaagg cttaaaggag
     1501 aaatttgtga atctcaagag aataagcaac ttggaaacca ctctcctgga aaaatgaatc
     1561 catcatctgg agaaaaacgg aaacaccagc agcaagagga gctacagcaa cttcgccaga
     1621 atttgcaccg gctccagatt ctatgcaact cagcagaaaa ggagcttcga tatgagcgag
     1681 gaaagaactt ggacttaaag cagcataaca gcttacttca ggaagaaagc attaagatca
     1741 aaatcgaact caagcaggcc cagcagaagt tattagacag cgcaaagatg tgctcttcac
     1801 tcacggctga gtggaagcac tgtcagcaga aaatcaagga actggagctg gaagtactta
     1861 aacaggctca gagcattaga tcacagaaca acctacagga aaacctggct caggagaaat
     1921 ctcgagttgc tgatgcagag gaaaagattt tggatctgca gcagaaatta gaacatgctc
     1981 atagagtctg tctcacagac acttgtattt tggggaggaa gcaattagag gaaaggataa
     2041 aagaagcaat agaaaatgaa gctaaaataa agcaacaata tcaggaagaa caacagaaga
     2101 ggaaactcct ggatcagaat atgaatgagc tacaaaagca agtgaaaatc ttaaaggata
     2161 aagagaatca actggaaatg accagttctc agcaacaatc gagaattcag caactagagg
     2221 cccaacttaa acaactggaa aatgaaaaaa gaaaatctga tgagcatctc aaaagcaacc
     2281 aggaattgtc agagaagctg tctgcgttgc agcaggagaa ggaagctcta cgtgaagagt
     2341 atgggcaatt tttgaagcgg cttgatgtcc atgtgagaaa ctataatgag aagcatcacc
     2401 accacaaagc caagcttcgc agagtcaagg atcgtttagt tcatgaagta gaactccgag
     2461 atgagagaat caaacaactt gaaaatgaga ttggagccct gcagcaacaa atggaaaagg
     2521 agaaggcatt ccaggaccag atcaccaccc aaaatgatat cctgctccta gaaaagagga
     2581 aacttctgga acagctcaca gagcaagagg aattgatcca cggcaataaa tggataatat
     2641 cttcggtcca gagcagagta cttttcctgg ataaagaaaa taagcagcta caagaaaaca
     2701 gtctccggct cacccagcag gttggtctct tagagcgaat cataaggagc atccagatcc
     2761 gcagagggga ggaaacaatt agtgacatcc ctgaatttga agtattgaat aaaattgtgc
     2821 ccttaccaaa ctccagtttt tcaggaatgg gtctgataga gtcagctgga agtcttcaag
     2881 aaactgaaga acataggtca gaagaagcaa tggtaaacac caagtccctc gagtctcttt
     2941 cgtgttcaca gaattctgaa gctggataca taaacgtggc ttctctgaaa gaaatacatc
     3001 acatccaaga ataaggccaa gtcagaacta taaaatcact ggtgtctaaa ctagactgat
     3061 caaagctgct agcttaaagc ttgggcgtga aggtggagca tgacgtggag aagagttatg
     3121 acagatcctc actggacgtc aaccaggagt cttcaaaatt gctgataaat tcattaaacc
     3181 tgttctaata atggatttct caagtttgtt tggtatcctc aaatgccttg tattgatcaa
     3241 tgtcatgact taagttcagt ggtttaatta gggggtttta tttaagattt tttttttga
//
LOCUS       XM_032609284            3073 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 30
            (CCDC30), transcript variant X2, mRNA.
ACCESSION   XM_032609284
VERSION     XM_032609284.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3073
                     /gene="CCDC30"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742016"
     CDS             494..2788
                     /gene="CCDC30"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 30 isoform
                     X1"
                     /protein_id="XP_032465175.1"
                     /db_xref="GeneID:116742016"
                     /translation="MEEIKEVENYANRVCNLPEEKEAFSHGYEKENKQPRHEFKGLQL
                     KPEVQIKEVEILYQEGLSEIALSSPSEQIAHLLMERSTPLRKLERGDPQPESQRCLSS
                     NLQKEFPQEKFEQTHQPLQREHQKHQELVHQSKKSLSESHDEDPEKSKISQNCREKDM
                     EQVTRRLGMAHEEIRRLTDELQGKEKEQSKLDSALEKSQLEIEKLKENLIKLKENDSV
                     DLRKAKEHNQRLDEEILALRNRVRSLDSERKVLGEEVERLKGEICESQENKQLGNHSP
                     GKMNPSSGEKRKHQQQEELQQLRQNLHRLQILCNSAEKELRYERGKNLDLKQHNSLLQ
                     EESIKIKIELKQAQQKLLDSAKMCSSLTAEWKHCQQKIKELELEVLKQAQSIRSQNNL
                     QENLAQEKSRVADAEEKILDLQQKLEHAHRVCLTDTCILGRKQLEERIKEAIENEAKI
                     KQQYQEEQQKRKLLDQNMNELQKQVKILKDKENQLEMTSSQQQSRIQQLEAQLKQLEN
                     EKRKSDEHLKSNQELSEKLSALQQEKEALREEYGQFLKRLDVHVRNYNEKHHHHKAKL
                     RRVKDRLVHEVELRDERIKQLENEIGALQQQMEKEKAFQDQITTQNDILLLEKRKLLE
                     QLTEQEELIHGNKWIISSVQSRVLFLDKENKQLQENSLRLTQQVGLLERIIRSIQIRR
                     GEETISDIPEFEVLNKIVPLPNSSFSGMGLIESAGSLQETEEHRSEEAMVNTKSLESL
                     SCSQNSEAGYINVASLKEIHHIQE"
     misc_feature    <860..>1270
                     /gene="CCDC30"
                     /note="Possible nuclease of RNase H fold, RuvC/YqgF family
                     [General function prediction only]; Region: COG2433"
                     /db_xref="CDD:441980"
     misc_feature    1334..2485
                     /gene="CCDC30"
                     /note="Domain of unknown function (DUF4686); Region:
                     DUF4686; pfam15742"
                     /db_xref="CDD:464838"
ORIGIN      
        1 gccaggccat gacaaagtcc accgagccac ggattcccct ggttgtcggc ctgtgaacaa
       61 agaactgccg ttttcgccgt tttgccctat gttcgccatg cagaacttta attcccgatg
      121 aagctccgga ggcattttgt atcctcaaca tcaggcgtca tcaaatcgag ctggagctta
      181 gcagagatgg attattattt aatcctccta acaacccaat gagatcagag acctcttgac
      241 ctaagggcac aacgtcaata gagagggaga taatgagcaa acagaaaaga agaagcttcc
      301 ttgaggaagc aatagaagat gggatctaga acacagggaa aagttcaatt agaagactta
      361 cttcaccatc ttgagaaaga agggattgaa ctccttgcct ttacagaaga acaatacttt
      421 gtctggtgct tgttacagca aagacaggct gaggactgct accagaaatc tagaagagct
      481 gtcagggaag cacatggaag aaattaaaga agtagaaaat tatgcaaacc gtgtctgtaa
      541 cttaccagag gaaaaggaag cattttctca tggttacgaa aaggaaaaca agcagcctag
      601 acatgagttt aaagggctcc aactcaaacc ggaagtgcaa ataaaggagg tcgaaatatt
      661 gtatcaagaa ggcttgtctg aaatagctct gagcagccct agtgaacaga ttgcacactt
      721 actcatggaa agaagtacac ccttgaggaa actggaacga ggggatcccc aaccagaatc
      781 acaaagatgt ctgagcagta acctacagaa agaatttccc caggagaaat ttgaacaaac
      841 tcaccagcct ctgcaaaggg aacatcagaa acatcaagaa cttgtgcatc agtctaaaaa
      901 aagtctgagt gagtcccatg atgaagaccc agaaaaaagt aaaatatcac aaaactgcag
      961 agagaaagat atggaacaag taacaaggag gttagggatg gcccatgaag agatccgaag
     1021 gctcactgat gaactgcaag ggaaggagaa agaacagagt aaattagatt ctgcacttga
     1081 gaagtctcaa ctagaaattg agaaattgaa agaaaatttg ataaagctga aagaaaatga
     1141 ctcagttgac ctacggaaag caaaggaaca taatcagaga ctggatgagg aaattctggc
     1201 tttaagaaat cgagttcgat cacttgactc agaaagaaag gtacttggcg aagaggttga
     1261 aaggcttaaa ggagaaattt gtgaatctca agagaataag caacttggaa accactctcc
     1321 tggaaaaatg aatccatcat ctggagaaaa acggaaacac cagcagcaag aggagctaca
     1381 gcaacttcgc cagaatttgc accggctcca gattctatgc aactcagcag aaaaggagct
     1441 tcgatatgag cgaggaaaga acttggactt aaagcagcat aacagcttac ttcaggaaga
     1501 aagcattaag atcaaaatcg aactcaagca ggcccagcag aagttattag acagcgcaaa
     1561 gatgtgctct tcactcacgg ctgagtggaa gcactgtcag cagaaaatca aggaactgga
     1621 gctggaagta cttaaacagg ctcagagcat tagatcacag aacaacctac aggaaaacct
     1681 ggctcaggag aaatctcgag ttgctgatgc agaggaaaag attttggatc tgcagcagaa
     1741 attagaacat gctcatagag tctgtctcac agacacttgt attttgggga ggaagcaatt
     1801 agaggaaagg ataaaagaag caatagaaaa tgaagctaaa ataaagcaac aatatcagga
     1861 agaacaacag aagaggaaac tcctggatca gaatatgaat gagctacaaa agcaagtgaa
     1921 aatcttaaag gataaagaga atcaactgga aatgaccagt tctcagcaac aatcgagaat
     1981 tcagcaacta gaggcccaac ttaaacaact ggaaaatgaa aaaagaaaat ctgatgagca
     2041 tctcaaaagc aaccaggaat tgtcagagaa gctgtctgcg ttgcagcagg agaaggaagc
     2101 tctacgtgaa gagtatgggc aatttttgaa gcggcttgat gtccatgtga gaaactataa
     2161 tgagaagcat caccaccaca aagccaagct tcgcagagtc aaggatcgtt tagttcatga
     2221 agtagaactc cgagatgaga gaatcaaaca acttgaaaat gagattggag ccctgcagca
     2281 acaaatggaa aaggagaagg cattccagga ccagatcacc acccaaaatg atatcctgct
     2341 cctagaaaag aggaaacttc tggaacagct cacagagcaa gaggaattga tccacggcaa
     2401 taaatggata atatcttcgg tccagagcag agtacttttc ctggataaag aaaataagca
     2461 gctacaagaa aacagtctcc ggctcaccca gcaggttggt ctcttagagc gaatcataag
     2521 gagcatccag atccgcagag gggaggaaac aattagtgac atccctgaat ttgaagtatt
     2581 gaataaaatt gtgcccttac caaactccag tttttcagga atgggtctga tagagtcagc
     2641 tggaagtctt caagaaactg aagaacatag gtcagaagaa gcaatggtaa acaccaagtc
     2701 cctcgagtct ctttcgtgtt cacagaattc tgaagctgga tacataaacg tggcttctct
     2761 gaaagaaata catcacatcc aagaataagg ccaagtcaga actataaaat cactggtgtc
     2821 taaactagac tgatcaaagc tgctagctta aagcttgggc gtgaaggtgg agcatgacgt
     2881 ggagaagagt tatgacagat cctcactgga cgtcaaccag gagtcttcaa aattgctgat
     2941 aaattcatta aacctgttct aataatggat ttctcaagtt tgtttggtat cctcaaatgc
     3001 cttgtattga tcaatgtcat gacttaagtt cagtggttta attagggggt tttatttaag
     3061 attttttttt tga
//
LOCUS       XM_032609293            3248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 30
            (CCDC30), transcript variant X3, mRNA.
ACCESSION   XM_032609293
VERSION     XM_032609293.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3248
                     /gene="CCDC30"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742016"
     CDS             720..2963
                     /gene="CCDC30"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 30 isoform
                     X2"
                     /protein_id="XP_032465184.1"
                     /db_xref="GeneID:116742016"
                     /translation="MEEIKEVENYANRVCNLPEEKEAFSHGYEKENKQPRHEFKGLQL
                     KPEVQIKEVEILYQEGLSEIALSSPSEQIAHLLMERSTPLRKLERGDPQPESQRCLSS
                     NLQKEFPQEKFEQTHQPLQREHQKHQELVHQSKKSLSESHDEDPEKSKISQNCREKDM
                     EQVTRRLGMAHEEIRRLTDELQGKEKEQSKLDSALEKSQLEIEKLKENLIKLKENDSV
                     DLRKAKEHNQRLDEEILALRNRVRSLDSERKVLGEEVERLKGEICESQENKQLGNHSP
                     GKMNPSSGEKRKHQQQEELQQLRQNLHRLQILCNSAEKELRYERGKNLDLKQHNSLLQ
                     EESIKIKIELKQAQQKLLDSAKMCSSLTAEWKHCQQKIKELELEVLKQAQSIRSQNNL
                     QENLAQEKSRVADAEEKILDLQQKLEHAHRVCLTDTCILGRKQLEERIKEAIENEAKI
                     KQQYQEEQQKRKLLDQNMNELQKQVKILKDKENQLEMTSSQQQSRIQQLEAQLKQLEN
                     EKRKSDEHLKSNQELSEKLSALQQEKEALREEYGQFLKRLDVHVRNYNEKHHHHKAKL
                     RRVKDRLVHEVELRDERIKQLENEIGALQQQMEKEKAFQDQITTQNDILLLEKRKLLE
                     QLTEQEELIHGNKWIISSVQSRVLFLDKENKQLQENSLRLTQQETISDIPEFEVLNKI
                     VPLPNSSFSGMGLIESAGSLQETEEHRSEEAMVNTKSLESLSCSQNSEAGYINVASLK
                     EIHHIQE"
     misc_feature    <1086..>1496
                     /gene="CCDC30"
                     /note="Possible nuclease of RNase H fold, RuvC/YqgF family
                     [General function prediction only]; Region: COG2433"
                     /db_xref="CDD:441980"
     misc_feature    1560..2711
                     /gene="CCDC30"
                     /note="Domain of unknown function (DUF4686); Region:
                     DUF4686; pfam15742"
                     /db_xref="CDD:464838"
ORIGIN      
        1 aaaggacaat ttccggcctg gttcctgagg ttcccgccgc agccccaagg agaaaagcag
       61 ctattctccg ctcttttttt tttttttttt tagcattccg ggtctttccc gcttttctgc
      121 ccagcaggac ctgaaacgac agaagagact cacctggctt ggcctttctc tgcctaagga
      181 tggattcgcc ggtttcccgg gacccacccg ccgcaggcct ttagaattag gctgctgctt
      241 ttatttaaag agggcttaga accctcagtc tgttaagtag acgttctttt tctcactttc
      301 caggcgaaga cacccctgca cagagactgc atctgaaggg ccaggccatg acaaagtcca
      361 ccgagccacg gattcccctg gttgtcggcc tgtgaacaaa gaactgccgt tttcgccgtt
      421 ttgccctatg ttcgccatgc agaactttaa ttcccgatga agctccggag gcattttgta
      481 tcctcaacat caggcgtcat caaatcgagc tggagcttag cagagatgga ttattattta
      541 atcctcctaa caacccaatg agggaaaagt tcaattagaa gacttacttc accatcttga
      601 gaaagaaggg attgaactcc ttgcctttac agaagaacaa tactttgtct ggtgcttgtt
      661 acagcaaaga caggctgagg actgctacca gaaatctaga agagctgtca gggaagcaca
      721 tggaagaaat taaagaagta gaaaattatg caaaccgtgt ctgtaactta ccagaggaaa
      781 aggaagcatt ttctcatggt tacgaaaagg aaaacaagca gcctagacat gagtttaaag
      841 ggctccaact caaaccggaa gtgcaaataa aggaggtcga aatattgtat caagaaggct
      901 tgtctgaaat agctctgagc agccctagtg aacagattgc acacttactc atggaaagaa
      961 gtacaccctt gaggaaactg gaacgagggg atccccaacc agaatcacaa agatgtctga
     1021 gcagtaacct acagaaagaa tttccccagg agaaatttga acaaactcac cagcctctgc
     1081 aaagggaaca tcagaaacat caagaacttg tgcatcagtc taaaaaaagt ctgagtgagt
     1141 cccatgatga agacccagaa aaaagtaaaa tatcacaaaa ctgcagagag aaagatatgg
     1201 aacaagtaac aaggaggtta gggatggccc atgaagagat ccgaaggctc actgatgaac
     1261 tgcaagggaa ggagaaagaa cagagtaaat tagattctgc acttgagaag tctcaactag
     1321 aaattgagaa attgaaagaa aatttgataa agctgaaaga aaatgactca gttgacctac
     1381 ggaaagcaaa ggaacataat cagagactgg atgaggaaat tctggcttta agaaatcgag
     1441 ttcgatcact tgactcagaa agaaaggtac ttggcgaaga ggttgaaagg cttaaaggag
     1501 aaatttgtga atctcaagag aataagcaac ttggaaacca ctctcctgga aaaatgaatc
     1561 catcatctgg agaaaaacgg aaacaccagc agcaagagga gctacagcaa cttcgccaga
     1621 atttgcaccg gctccagatt ctatgcaact cagcagaaaa ggagcttcga tatgagcgag
     1681 gaaagaactt ggacttaaag cagcataaca gcttacttca ggaagaaagc attaagatca
     1741 aaatcgaact caagcaggcc cagcagaagt tattagacag cgcaaagatg tgctcttcac
     1801 tcacggctga gtggaagcac tgtcagcaga aaatcaagga actggagctg gaagtactta
     1861 aacaggctca gagcattaga tcacagaaca acctacagga aaacctggct caggagaaat
     1921 ctcgagttgc tgatgcagag gaaaagattt tggatctgca gcagaaatta gaacatgctc
     1981 atagagtctg tctcacagac acttgtattt tggggaggaa gcaattagag gaaaggataa
     2041 aagaagcaat agaaaatgaa gctaaaataa agcaacaata tcaggaagaa caacagaaga
     2101 ggaaactcct ggatcagaat atgaatgagc tacaaaagca agtgaaaatc ttaaaggata
     2161 aagagaatca actggaaatg accagttctc agcaacaatc gagaattcag caactagagg
     2221 cccaacttaa acaactggaa aatgaaaaaa gaaaatctga tgagcatctc aaaagcaacc
     2281 aggaattgtc agagaagctg tctgcgttgc agcaggagaa ggaagctcta cgtgaagagt
     2341 atgggcaatt tttgaagcgg cttgatgtcc atgtgagaaa ctataatgag aagcatcacc
     2401 accacaaagc caagcttcgc agagtcaagg atcgtttagt tcatgaagta gaactccgag
     2461 atgagagaat caaacaactt gaaaatgaga ttggagccct gcagcaacaa atggaaaagg
     2521 agaaggcatt ccaggaccag atcaccaccc aaaatgatat cctgctccta gaaaagagga
     2581 aacttctgga acagctcaca gagcaagagg aattgatcca cggcaataaa tggataatat
     2641 cttcggtcca gagcagagta cttttcctgg ataaagaaaa taagcagcta caagaaaaca
     2701 gtctccggct cacccagcag gaaacaatta gtgacatccc tgaatttgaa gtattgaata
     2761 aaattgtgcc cttaccaaac tccagttttt caggaatggg tctgatagag tcagctggaa
     2821 gtcttcaaga aactgaagaa cataggtcag aagaagcaat ggtaaacacc aagtccctcg
     2881 agtctctttc gtgttcacag aattctgaag ctggatacat aaacgtggct tctctgaaag
     2941 aaatacatca catccaagaa taaggccaag tcagaactat aaaatcactg gtgtctaaac
     3001 tagactgatc aaagctgcta gcttaaagct tgggcgtgaa ggtggagcat gacgtggaga
     3061 agagttatga cagatcctca ctggacgtca accaggagtc ttcaaaattg ctgataaatt
     3121 cattaaacct gttctaataa tggatttctc aagtttgttt ggtatcctca aatgccttgt
     3181 attgatcaat gtcatgactt aagttcagtg gtttaattag ggggttttat ttaagatttt
     3241 ttttttga
//
LOCUS       XM_032609301            2321 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 30
            (CCDC30), transcript variant X4, mRNA.
ACCESSION   XM_032609301
VERSION     XM_032609301.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2321
                     /gene="CCDC30"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742016"
     CDS             9..2036
                     /gene="CCDC30"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 30 isoform
                     X3"
                     /protein_id="XP_032465192.1"
                     /db_xref="GeneID:116742016"
                     /translation="MVTKRKTSSLDMSLKGSNSNREKFEQTHQPLQREHQKHQELVHQ
                     SKKSLSESHDEDPEKSKISQNCREKDMEQVTRRLGMAHEEIRRLTDELQGKEKEQSKL
                     DSALEKSQLEIEKLKENLIKLKENDSVDLRKAKEHNQRLDEEILALRNRVRSLDSERK
                     VLGEEVERLKGEICESQENKQLGNHSPGKMNPSSGEKRKHQQQEELQQLRQNLHRLQI
                     LCNSAEKELRYERGKNLDLKQHNSLLQEESIKIKIELKQAQQKLLDSAKMCSSLTAEW
                     KHCQQKIKELELEVLKQAQSIRSQNNLQENLAQEKSRVADAEEKILDLQQKLEHAHRV
                     CLTDTCILGRKQLEERIKEAIENEAKIKQQYQEEQQKRKLLDQNMNELQKQVKILKDK
                     ENQLEMTSSQQQSRIQQLEAQLKQLENEKRKSDEHLKSNQELSEKLSALQQEKEALRE
                     EYGQFLKRLDVHVRNYNEKHHHHKAKLRRVKDRLVHEVELRDERIKQLENEIGALQQQ
                     MEKEKAFQDQITTQNDILLLEKRKLLEQLTEQEELIHGNKWIISSVQSRVLFLDKENK
                     QLQENSLRLTQQVGLLERIIRSIQIRRGEETISDIPEFEVLNKIVPLPNSSFSGMGLI
                     ESAGSLQETEEHRSEEAMVNTKSLESLSCSQNSEAGYINVASLKEIHHIQE"
     misc_feature    <72..995
                     /gene="CCDC30"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    582..1733
                     /gene="CCDC30"
                     /note="Domain of unknown function (DUF4686); Region:
                     DUF4686; pfam15742"
                     /db_xref="CDD:464838"
ORIGIN      
        1 attttctcat ggttacgaaa aggaaaacaa gcagcctaga catgagttta aagggctcca
       61 actcaaaccg ggagaaattt gaacaaactc accagcctct gcaaagggaa catcagaaac
      121 atcaagaact tgtgcatcag tctaaaaaaa gtctgagtga gtcccatgat gaagacccag
      181 aaaaaagtaa aatatcacaa aactgcagag agaaagatat ggaacaagta acaaggaggt
      241 tagggatggc ccatgaagag atccgaaggc tcactgatga actgcaaggg aaggagaaag
      301 aacagagtaa attagattct gcacttgaga agtctcaact agaaattgag aaattgaaag
      361 aaaatttgat aaagctgaaa gaaaatgact cagttgacct acggaaagca aaggaacata
      421 atcagagact ggatgaggaa attctggctt taagaaatcg agttcgatca cttgactcag
      481 aaagaaaggt acttggcgaa gaggttgaaa ggcttaaagg agaaatttgt gaatctcaag
      541 agaataagca acttggaaac cactctcctg gaaaaatgaa tccatcatct ggagaaaaac
      601 ggaaacacca gcagcaagag gagctacagc aacttcgcca gaatttgcac cggctccaga
      661 ttctatgcaa ctcagcagaa aaggagcttc gatatgagcg aggaaagaac ttggacttaa
      721 agcagcataa cagcttactt caggaagaaa gcattaagat caaaatcgaa ctcaagcagg
      781 cccagcagaa gttattagac agcgcaaaga tgtgctcttc actcacggct gagtggaagc
      841 actgtcagca gaaaatcaag gaactggagc tggaagtact taaacaggct cagagcatta
      901 gatcacagaa caacctacag gaaaacctgg ctcaggagaa atctcgagtt gctgatgcag
      961 aggaaaagat tttggatctg cagcagaaat tagaacatgc tcatagagtc tgtctcacag
     1021 acacttgtat tttggggagg aagcaattag aggaaaggat aaaagaagca atagaaaatg
     1081 aagctaaaat aaagcaacaa tatcaggaag aacaacagaa gaggaaactc ctggatcaga
     1141 atatgaatga gctacaaaag caagtgaaaa tcttaaagga taaagagaat caactggaaa
     1201 tgaccagttc tcagcaacaa tcgagaattc agcaactaga ggcccaactt aaacaactgg
     1261 aaaatgaaaa aagaaaatct gatgagcatc tcaaaagcaa ccaggaattg tcagagaagc
     1321 tgtctgcgtt gcagcaggag aaggaagctc tacgtgaaga gtatgggcaa tttttgaagc
     1381 ggcttgatgt ccatgtgaga aactataatg agaagcatca ccaccacaaa gccaagcttc
     1441 gcagagtcaa ggatcgttta gttcatgaag tagaactccg agatgagaga atcaaacaac
     1501 ttgaaaatga gattggagcc ctgcagcaac aaatggaaaa ggagaaggca ttccaggacc
     1561 agatcaccac ccaaaatgat atcctgctcc tagaaaagag gaaacttctg gaacagctca
     1621 cagagcaaga ggaattgatc cacggcaata aatggataat atcttcggtc cagagcagag
     1681 tacttttcct ggataaagaa aataagcagc tacaagaaaa cagtctccgg ctcacccagc
     1741 aggttggtct cttagagcga atcataagga gcatccagat ccgcagaggg gaggaaacaa
     1801 ttagtgacat ccctgaattt gaagtattga ataaaattgt gcccttacca aactccagtt
     1861 tttcaggaat gggtctgata gagtcagctg gaagtcttca agaaactgaa gaacataggt
     1921 cagaagaagc aatggtaaac accaagtccc tcgagtctct ttcgtgttca cagaattctg
     1981 aagctggata cataaacgtg gcttctctga aagaaataca tcacatccaa gaataaggcc
     2041 aagtcagaac tataaaatca ctggtgtcta aactagactg atcaaagctg ctagcttaaa
     2101 gcttgggcgt gaaggtggag catgacgtgg agaagagtta tgacagatcc tcactggacg
     2161 tcaaccagga gtcttcaaaa ttgctgataa attcattaaa cctgttctaa taatggattt
     2221 ctcaagtttg tttggtatcc tcaaatgcct tgtattgatc aatgtcatga cttaagttca
     2281 gtggtttaat tagggggttt tatttaagat tttttttttg a
//
LOCUS       XM_032609310            1791 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 30
            (CCDC30), transcript variant X5, mRNA.
ACCESSION   XM_032609310
VERSION     XM_032609310.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1791
                     /gene="CCDC30"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742016"
     CDS             280..1506
                     /gene="CCDC30"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 30 isoform
                     X4"
                     /protein_id="XP_032465201.1"
                     /db_xref="GeneID:116742016"
                     /translation="MCSSLTAEWKHCQQKIKELELEVLKQAQSIRSQNNLQENLAQEK
                     SRVADAEEKILDLQQKLEHAHRVCLTDTCILGRKQLEERIKEAIENEAKIKQQYQEEQ
                     QKRKLLDQNMNELQKQVKILKDKENQLEMTSSQQQSRIQQLEAQLKQLENEKRKSDEH
                     LKSNQELSEKLSALQQEKEALREEYGQFLKRLDVHVRNYNEKHHHHKAKLRRVKDRLV
                     HEVELRDERIKQLENEIGALQQQMEKEKAFQDQITTQNDILLLEKRKLLEQLTEQEEL
                     IHGNKWIISSVQSRVLFLDKENKQLQENSLRLTQQVGLLERIIRSIQIRRGEETISDI
                     PEFEVLNKIVPLPNSSFSGMGLIESAGSLQETEEHRSEEAMVNTKSLESLSCSQNSEA
                     GYINVASLKEIHHIQE"
     misc_feature    280..1203
                     /gene="CCDC30"
                     /note="Domain of unknown function (DUF4686); Region:
                     DUF4686; pfam15742"
                     /db_xref="CDD:464838"
ORIGIN      
        1 tttggaagta gagattcaaa gcccaaagga agagagagag gagctctgaa tccatcatct
       61 ggagaaaaac ggaaacacca gcagcaagag gagctacagc aacttcgcca gaatttgcac
      121 cggctccaga ttctatgcaa ctcagcagaa aaggagcttc gatatgagcg aggaaagaac
      181 ttggacttaa agcagcataa cagcttactt caggaagaaa gcattaagat caaaatcgaa
      241 ctcaagcagg cccagcagaa gttattagac agcgcaaaga tgtgctcttc actcacggct
      301 gagtggaagc actgtcagca gaaaatcaag gaactggagc tggaagtact taaacaggct
      361 cagagcatta gatcacagaa caacctacag gaaaacctgg ctcaggagaa atctcgagtt
      421 gctgatgcag aggaaaagat tttggatctg cagcagaaat tagaacatgc tcatagagtc
      481 tgtctcacag acacttgtat tttggggagg aagcaattag aggaaaggat aaaagaagca
      541 atagaaaatg aagctaaaat aaagcaacaa tatcaggaag aacaacagaa gaggaaactc
      601 ctggatcaga atatgaatga gctacaaaag caagtgaaaa tcttaaagga taaagagaat
      661 caactggaaa tgaccagttc tcagcaacaa tcgagaattc agcaactaga ggcccaactt
      721 aaacaactgg aaaatgaaaa aagaaaatct gatgagcatc tcaaaagcaa ccaggaattg
      781 tcagagaagc tgtctgcgtt gcagcaggag aaggaagctc tacgtgaaga gtatgggcaa
      841 tttttgaagc ggcttgatgt ccatgtgaga aactataatg agaagcatca ccaccacaaa
      901 gccaagcttc gcagagtcaa ggatcgttta gttcatgaag tagaactccg agatgagaga
      961 atcaaacaac ttgaaaatga gattggagcc ctgcagcaac aaatggaaaa ggagaaggca
     1021 ttccaggacc agatcaccac ccaaaatgat atcctgctcc tagaaaagag gaaacttctg
     1081 gaacagctca cagagcaaga ggaattgatc cacggcaata aatggataat atcttcggtc
     1141 cagagcagag tacttttcct ggataaagaa aataagcagc tacaagaaaa cagtctccgg
     1201 ctcacccagc aggttggtct cttagagcga atcataagga gcatccagat ccgcagaggg
     1261 gaggaaacaa ttagtgacat ccctgaattt gaagtattga ataaaattgt gcccttacca
     1321 aactccagtt tttcaggaat gggtctgata gagtcagctg gaagtcttca agaaactgaa
     1381 gaacataggt cagaagaagc aatggtaaac accaagtccc tcgagtctct ttcgtgttca
     1441 cagaattctg aagctggata cataaacgtg gcttctctga aagaaataca tcacatccaa
     1501 gaataaggcc aagtcagaac tataaaatca ctggtgtcta aactagactg atcaaagctg
     1561 ctagcttaaa gcttgggcgt gaaggtggag catgacgtgg agaagagtta tgacagatcc
     1621 tcactggacg tcaaccagga gtcttcaaaa ttgctgataa attcattaaa cctgttctaa
     1681 taatggattt ctcaagtttg tttggtatcc tcaaatgcct tgtattgatc aatgtcatga
     1741 cttaagttca gtggtttaat tagggggttt tatttaagat tttttttttg a
//
LOCUS       XM_032609325            1558 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphopantothenoylcysteine synthetase
            (PPCS), transcript variant X1, mRNA.
ACCESSION   XM_032609325
VERSION     XM_032609325.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1558
                     /gene="PPCS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 long SRA reads, 11
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742038"
     CDS             73..1008
                     /gene="PPCS"
                     /codon_start=1
                     /product="phosphopantothenate--cysteine ligase isoform X1"
                     /protein_id="XP_032465216.1"
                     /db_xref="GeneID:116742038"
                     /translation="MAAVDLVAEFPQPAGAARWAEVMARFAAGLGAQGRRVVLVTSGG
                     TKVPLEARPVRFLDNFSSGRRGATSAEAFLAVGYGVLFLYRARSAFPFAHRFPPQTWL
                     SALRPSGRAASGLLSLEAEEKALPGFAAALRSYQEAEAAGTFLAIEFTTLADYLHLLQ
                     AAAQALNPLGSSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKMLSPLV
                     KDWAPKAFIISFKLETDPSIVIDRARNALEIYRHQVVVANILDSRRSFVVIITKESET
                     KLLLSEEEVGKGIEIEEKIVDDLQSRHTAFIHDKN"
     misc_feature    <115..975
                     /gene="PPCS"
                     /note="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate synthase; Validated;
                     Region: PRK05579"
                     /db_xref="CDD:235513"
ORIGIN      
        1 ccaggtaccg gggcaggggg cgtggcgccg aagacgccgt agcttgcgct ggcgcggcgg
       61 gttccgggac cgatggcggc agtggacctg gtcgccgagt tcccccagcc cgccggtgct
      121 gcgcgctggg ccgaggtgat ggctcggttc gccgccgggc tgggtgcgca gggccgacgg
      181 gtagtgttgg tcacgtccgg cggcaccaag gtcccgctgg aagcccggcc tgtgcgcttc
      241 ctggacaact tcagcagcgg gcggcgcggt gctacctcgg ccgaagcctt cctggccgtg
      301 ggctacgggg tcctgtttct gtaccgtgct cgctctgcct tcccctttgc ccaccgcttc
      361 ccgccccaga cctggctgtc ggctctgcgg ccctccggcc gagcggcttc gggcttgctg
      421 agcttggagg cggaggagaa ggcactcccg ggcttcgccg cggctctgcg gagctaccag
      481 gaggctgagg ctgccggcac cttcctggcc atagagttca ccactttggc agactatttg
      541 catctgctgc aggctgcagc ccaggcgctc aatccgctag gctcttctgc gatgttttac
      601 ctggctgcgg ccgtgtcaga tttctatgtt cctgtgtccg aaatgcctga acacaagatc
      661 cagtcatctg ggggcccact gcagataaca atgaagatgg tgccaaaaat gctttctcct
      721 ttggttaaag actgggctcc caaagcattt ataatttcct ttaagttgga gactgacccc
      781 tccattgtaa ttgatcgtgc acggaatgct ttggaaattt atcgacatca agtggtggtg
      841 gctaacatcc ttgattcaag acggtccttt gtggttatta taaccaaaga gtcagaaacc
      901 aagttattgt tatcagagga agaagtagga aaaggcatag agatagaaga gaagatagtg
      961 gatgatcttc agtctcgaca taccgctttt atacatgaca aaaactgaag taaaaagcct
     1021 ttatttataa gatcaaagat tgttcagtgg accagggctc ttacagatgg tgagaactag
     1081 aataagtcct ttgctttcat aaagacagaa aatgaagggg aaaagcagtg agtggtgtgc
     1141 agacgaatag tgcttggtgt ttgtctttta aaggtctttt aaaactcaga aaacatgaga
     1201 acaaaggtaa agcagttatg accaaagcac ctgacacact cacctgaatg atatcttgat
     1261 tttgaaaatg attcaagttg tttctcacct taaaaaagaa aaaacttatt gggaattata
     1321 ttcctcaaaa tatacacatg gggcctgaat atcaatcttc ttcatactgt aaaagggatt
     1381 gtggatgcat gaatggccat gctttgaaga gcaaatattt gttcatgcct actatgtgat
     1441 aggccctgag gattttgagg attcaaaaga tgaataaaca tgtctagttt gggaaatgga
     1501 tatataaaaa attaagtaca ataaagtgtg tgccccaaag ccaacacaat ggaaagga
//
LOCUS       XM_032609333            1019 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphopantothenoylcysteine synthetase
            (PPCS), transcript variant X2, mRNA.
ACCESSION   XM_032609333
VERSION     XM_032609333.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1019
                     /gene="PPCS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742038"
     CDS             152..469
                     /gene="PPCS"
                     /codon_start=1
                     /product="phosphopantothenate--cysteine ligase isoform X2"
                     /protein_id="XP_032465224.1"
                     /db_xref="GeneID:116742038"
                     /translation="MKMVPKMLSPLVKDWAPKAFIISFKLETDPSIVIDRARNALEIY
                     RHQVVVANILDSRRSFVVIITKESETKLLLSEEEVGKGIEIEEKIVDDLQSRHTAFIH
                     DKN"
     misc_feature    <155..400
                     /gene="PPCS"
                     /note="phosphopantothenate--cysteine ligase; Validated;
                     Region: PRK06732; cl29327"
                     /db_xref="CDD:475183"
ORIGIN      
        1 gatggccttt ctgcattccg tatgtgctag gcactaggga tcagagatga ctaagacacc
       61 gctctccctc aaggacctca caatctagtg aggttgctgg acacagacat aattacagta
      121 cagagtgata aatactctag tagagataac aatgaagatg gtgccaaaaa tgctttctcc
      181 tttggttaaa gactgggctc ccaaagcatt tataatttcc tttaagttgg agactgaccc
      241 ctccattgta attgatcgtg cacggaatgc tttggaaatt tatcgacatc aagtggtggt
      301 ggctaacatc cttgattcaa gacggtcctt tgtggttatt ataaccaaag agtcagaaac
      361 caagttattg ttatcagagg aagaagtagg aaaaggcata gagatagaag agaagatagt
      421 ggatgatctt cagtctcgac ataccgcttt tatacatgac aaaaactgaa gtaaaaagcc
      481 tttatttata agatcaaaga ttgttcagtg gaccagggct cttacagatg gtgagaacta
      541 gaataagtcc tttgctttca taaagacaga aaatgaaggg gaaaagcagt gagtggtgtg
      601 cagacgaata gtgcttggtg tttgtctttt aaaggtcttt taaaactcag aaaacatgag
      661 aacaaaggta aagcagttat gaccaaagca cctgacacac tcacctgaat gatatcttga
      721 ttttgaaaat gattcaagtt gtttctcacc ttaaaaaaga aaaaacttat tgggaattat
      781 attcctcaaa atatacacat ggggcctgaa tatcaatctt cttcatactg taaaagggat
      841 tgtggatgca tgaatggcca tgctttgaag agcaaatatt tgttcatgcc tactatgtga
      901 taggccctga ggattttgag gattcaaaag atgaataaac atgtctagtt tgggaaatgg
      961 atatataaaa aattaagtac aataaagtgt gtgccccaaa gccaacacaa tggaaagga
//
LOCUS       XM_032609345            3177 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase Na+/K+ transporting subunit alpha
            2 (ATP1A2), mRNA.
ACCESSION   XM_032609345
VERSION     XM_032609345.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3177
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3177
                     /gene="ATP1A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 105 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742064"
     CDS             77..3139
                     /gene="ATP1A2"
                     /codon_start=1
                     /product="sodium/potassium-transporting ATPase subunit
                     alpha-2"
                     /protein_id="XP_032465236.1"
                     /db_xref="GeneID:116742064"
                     /translation="MGRGAGREYSPAATTAENGGGKKKQKEKELDELKKEVAMDDHKL
                     SLDELGRKYQVDLSKGLTNQRAQDILARDGPNALTPPPTTPEWVKFCRQLFGGFSILL
                     WIGAILCFLAYGIQAAMEDEPSNDNLYLGVVLAAVVIVTGCFSYYQEAKSSKIMDSFK
                     NMVPQQALVVREGEKMQINAEEVVVGDLVEVKGGDRVPADLRIISSHGCKVDNSSLTG
                     ESEPQTRSPEFTHENPLETRNICFFSTNCVEGTARGIVIATGDRTVMGRIATLASGLE
                     VGRTPIAMEIEHFIQLITGVAVFLGVSFFVLSLILGYSWLEAVIFLIGIIVANVPEGL
                     LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFD
                     NQIHEADTTEDQSGATFDKRSPTWTALSRIAGLCNRAVFKAGQENISVSKRDTAGDAS
                     ESALLKCIELSCGSVRKMRDRNPKVAEIPFNSTNKYQLSIHEREDSPQSYVLVMKGAP
                     ERILDRCSSILVQGKEVPLDKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKFPRGF
                     KFDTDELNFPTEKLCFVGLMSMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI
                     AKGVGIISEGNETVEDIAARLNIPVSQVNPREAKACVVHGSDLKDMTSEQLDEILKNH
                     TEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGIAMGIAGSDVSK
                     QAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLP
                     LGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNPQTDKLVNERLISMAYGQIGM
                     IQALGGFFTYFVILAENGFLPSRLLGIRLDWDDRSMNDLEDSYGQEWTYEQRKVVEFT
                     CHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLLEETALAAFLSYCPGMG
                     VALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLILRRYPGGWVEKETYY"
     misc_feature    164..3136
                     /gene="ATP1A2"
                     /note="sodium or proton efflux -- potassium uptake
                     antiporter, P-type ATPase, alpha subunit; Region:
                     ATPase-IIC_X-K; TIGR01106"
                     /db_xref="CDD:273445"
ORIGIN      
        1 cccaggctgg tggtgtgagc ttgggatcct cccggtgacc tcccccatct agattcctca
       61 gccactctgc cccaagatgg gccgtggggc cggccgcgag tactcacctg cggccaccac
      121 tgcggaaaat gggggcggca agaaaaaaca gaaagagaag gagctggatg agctgaagaa
      181 ggaggtggcc atggatgacc acaagctgtc cttggatgag ctgggccgca agtaccaagt
      241 ggatctgtcc aagggcctca ccaaccagcg ggcccaggac attctggctc gggatggacc
      301 caatgccctc accccacccc cgaccacccc tgagtgggtc aagttctgtc gccagctttt
      361 cgggggcttc tccatcctgc tgtggattgg ggccatcctc tgcttcctgg cctacggcat
      421 ccaggctgcc atggaggatg aaccatccaa tgacaatctg tatctgggcg tggtgctggc
      481 agctgtggtc atcgtgactg gctgcttctc ctactaccag gaggccaaga gctccaagat
      541 catggattcc ttcaagaaca tggtgcctca gcaagccctc gtggtacggg aaggagagaa
      601 gatgcagatc aacgcggagg aggtggtggt cggagacctg gtggaggtga agggtggaga
      661 ccgagtgcct gccgacctcc ggatcatctc ttctcacggc tgtaaggtgg ataactcatc
      721 cctaacaggc gagtcggagc cccagacccg ctcccccgag ttcacccacg agaaccccct
      781 ggagacccgc aatatctgtt tcttctctac caactgcgtg gaaggcactg ccaggggcat
      841 cgtgattgcc acaggtgacc ggaccgtgat gggccgcata gccactctgg cctcaggcct
      901 ggaggtcggg cggacaccca tagccatgga gattgagcat ttcatccagc tgatcacggg
      961 ggtggctgtg ttcctggggg tatccttctt cgtgctgtcc ctcatcctgg gctacagctg
     1021 gctggaggcg gtcatcttcc tcatcggcat catcgtggcc aatgtgcctg aggggctgct
     1081 ggccactgtc actgtgtgtc tgaccctgac agccaagcgc atggctcgga agaactgcct
     1141 ggtgaagaac ctggaggcgg tggagacgct gggctccacc tccaccatct gctccgacaa
     1201 gacgggcacc ctcacccaga accgcatgac cgtcgcccac atgtggtttg acaaccagat
     1261 ccatgaggcc gacaccacag aagatcagtc tggggccact ttcgacaaac gatcccccac
     1321 gtggaccgcc ctgtcccgga ttgctggtct ctgcaaccgt gctgtcttca aggcagggca
     1381 ggagaacatc tctgtgtcta agcgggacac agctggtgat gcctcagagt cagctctgct
     1441 caagtgcatt gagctatcct gcggctccgt gaggaagatg agggatagaa accccaaggt
     1501 ggcggagatc ccgttcaact caaccaataa gtaccagctg tccatccacg agagagaaga
     1561 cagcccccag agctacgtgc tggtgatgaa gggggccccc gagcgcatcc tggaccggtg
     1621 ctcctccatc ttggtgcagg gcaaggaggt ccctctagac aaggagatgc aagacgcctt
     1681 ccagaatgcc tacctggagc tgggaggact gggggagcga gtgctaggct tctgtcaact
     1741 gaatctgccc tctggaaagt ttcctcgggg cttcaaattc gacacagatg agctgaactt
     1801 tcccacggag aagctctgct tcgtggggct catgtccatg attgaccctc cacgggctgc
     1861 cgtgccggac gctgtgggca agtgccggag tgcaggcatc aaggtgatca tggtgaccgg
     1921 ggaccaccct atcacagcca aggccattgc caaaggtgtg ggtatcatat cagagggcaa
     1981 cgagacggtg gaggacattg cagcccggct caacattcct gtcagccagg tcaaccccag
     2041 agaggccaag gcatgtgtgg tgcacggctc tgacctgaag gacatgacgt cagagcagct
     2101 ggacgagatc ctcaagaacc acacggagat tgtctttgcc cggacgtctc ctcagcagaa
     2161 gctcatcatc gtggagggct gtcagaggca gggagccatt gtggcggtga caggggacgg
     2221 ggtgaacgac tcccctgcgc tgaagaaggc agacatcggc atcgccatgg gcatcgctgg
     2281 ctctgacgtg tctaagcagg cagccgacat gatcctgctg gacgacaact ttgcctccat
     2341 cgtcactggt gtggaggagg gccgcctgat ctttgacaac ctgaagaaat ccatcgccta
     2401 caccctgacc agcaacatcc ccgagatcac ccccttcctg ctgttcatca tcgccaacat
     2461 ccccctgcct ctgggcactg tgaccatcct ctgcattgac ttgggcactg acatggtccc
     2521 tgccatctcc ttggcctatg aggcagctga gagtgacatc atgaagcggc agccgagaaa
     2581 cccgcagacg gacaagctgg tgaacgagag gctgatcagc atggcctatg gacagatcgg
     2641 gatgatccag gcgctgggtg gcttcttcac ctacttcgtg atcctggcag agaatggttt
     2701 cctgccttca cggctgctgg gaatccgcct cgactgggac gaccggtcca tgaacgacct
     2761 ggaggacagc tacggacagg agtggaccta tgagcaacgg aaggtggtgg agttcacgtg
     2821 ccacacggcc ttctttgcca gcatcgtggt cgtgcagtgg gctgacctca tcatctgcaa
     2881 gacccgccgc aactcagtct tccagcaggg catgaagaac aagattctga tttttgggct
     2941 cctggaggag acagcgctgg cggcctttct gtcctactgc ccgggcatgg gtgtggccct
     3001 gcgcatgtac ccgctcaagg tcacctggtg gttctgcgcc ttcccctaca gtctcctcat
     3061 cttcatctac gatgaggtcc gaaagctgat cctgcggcga tatccaggcg gctgggtgga
     3121 gaaggagacg tactactgag ccctttggaa agaagagcca agcatgggaa agacggg
//
LOCUS       XM_032609346            1341 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear distribution C, dynein complex
            regulator (NUDC), transcript variant X1, mRNA.
ACCESSION   XM_032609346
VERSION     XM_032609346.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1341
                     /gene="NUDC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742080"
     CDS             123..1127
                     /gene="NUDC"
                     /codon_start=1
                     /product="nuclear migration protein nudC isoform X1"
                     /protein_id="XP_032465237.1"
                     /db_xref="GeneID:116742080"
                     /translation="MGGEQEEDRFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFFV
                     GGEEGMAEKLITQTFNHHNQLAQKARREKRAQQETERREKAERAARLAKEAKSETSGP
                     QIKELTDEEAERLQLEIDQVGKKDAESHEAQLKNGSLGSPGKQEAEEAEEEEDEKDKG
                     KLKPNFGNGADLPSYRWTQTLSELDLAVPFPVNFRLKGKDVVVDIQRRRLRVGLKGQP
                     AIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPEN
                     SKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN
                     "
     misc_feature    147..302
                     /gene="NUDC"
                     /note="N-terminal conserved domain of Nudc; Region:
                     Nudc_N; pfam14050"
                     /db_xref="CDD:464073"
     misc_feature    408..>557
                     /gene="NUDC"
                     /note="Nuclear distribution C domain; Region: NuDC;
                     pfam16273"
                     /db_xref="CDD:465078"
     misc_feature    645..905
                     /gene="NUDC"
                     /note="p23-like NUD (nuclear distribution) C-like domain
                     of mammalian(m) NUDC and similar proteins. Mammalian(m)
                     NUDC associates both with the dynein complex and also with
                     an anti-inflammatory enzyme, platelet activating factor
                     acetylhydrolase I, PAF-AH(I)...; Region: p23_mNUDC_like;
                     cd06492"
                     /db_xref="CDD:107241"
ORIGIN      
        1 tccggctccg ctgcggaagg ccgagaacta gagcggctgg accggacgcg accctaagga
       61 gcggagagcg cgggacgcgt gtgcggagct cagatttcgg agtgaggcta gcggccggca
      121 cgatgggcgg agagcaggag gaggatcggt tcgacggcat gttgctggcc atggcgcagc
      181 agcacgaggg cggcgtgcag gagctcgtga acactttctt cagcttcctt cgacgcaaaa
      241 cagacttttt cgttggagga gaagagggga tggcagagaa gcttatcaca cagaccttca
      301 accaccacaa ccagctggca cagaaggcca ggcgggagaa gagagctcag caggagactg
      361 agcggcggga gaaagcggag cgggcagcca ggctggccaa ggaggccaag tcagagacct
      421 ctgggcccca gatcaaggaa ctgactgatg aggaggccga gaggctgcag ctggaaattg
      481 accaagtagg aaaaaaggat gcagagagtc atgaagccca gctcaagaat ggcagtctcg
      541 gctcaccagg gaagcaggag gctgaagagg ctgaggagga ggaggacgag aaggacaaag
      601 ggaagctgaa gcccaatttc ggcaatgggg cagacctgcc cagttaccgc tggacccaga
      661 ccctgtcgga gctggacctg gcagtgccct tccccgtgaa cttccggctg aaggggaagg
      721 acgtggtggt ggacatccag cggaggcgcc tccgggtggg gctcaagggg cagccggcga
      781 tcgtggacgg ggagctttac aacgaggtga aggtggagga gagctcgtgg ctcatcgagg
      841 acggcaaggt ggtgacggtg catctggaga agatcaacaa gatggagtgg tggagccgtt
      901 tggtgtccag tgaccccgag atcaatacca agaagatcaa tcctgagaac tccaagctgt
      961 cagacctgga cagtgagacc cgcagcatgg tggagaagat gatgtatgac cagagacaga
     1021 agtccatggg gctgcccacc tcagatgagc agaagaaaca ggagattctg aagaagttca
     1081 tggatcagca tccagagatg gatttttcca aggccaaatt caactagccc ctgtgtttgc
     1141 ctccctgaac tcttggggct gaactcccag ctacccacct tcctttccca cccttccctg
     1201 ggacttgtgg gcctcagggc tggggcaggc atggggctgg cccacacagg tctgagggca
     1261 tcatgggaaa agggctgggg ccttgggggt gtcttgttcc atttggcctg ctgttacaca
     1321 ttaaaactat ttacccaatt c
//
LOCUS       XM_032609347            1335 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear distribution C, dynein complex
            regulator (NUDC), transcript variant X2, mRNA.
ACCESSION   XM_032609347
VERSION     XM_032609347.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1335
                     /gene="NUDC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742080"
     CDS             123..1121
                     /gene="NUDC"
                     /codon_start=1
                     /product="nuclear migration protein nudC isoform X2"
                     /protein_id="XP_032465238.1"
                     /db_xref="GeneID:116742080"
                     /translation="MGGEQEEDRFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFFV
                     GGEEGMAEKLITQTFNHHNQLAQKARREKRAQQETERREKAERAARLAKEAKSETSGP
                     QIKELTDEEAERLQLEIDQKKDAESHEAQLKNGSLGSPGKQEAEEAEEEEDEKDKGKL
                     KPNFGNGADLPSYRWTQTLSELDLAVPFPVNFRLKGKDVVVDIQRRRLRVGLKGQPAI
                     VDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSK
                     LSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN"
     misc_feature    147..302
                     /gene="NUDC"
                     /note="N-terminal conserved domain of Nudc; Region:
                     Nudc_N; pfam14050"
                     /db_xref="CDD:464073"
     misc_feature    408..>551
                     /gene="NUDC"
                     /note="Nuclear distribution C domain; Region: NuDC;
                     pfam16273"
                     /db_xref="CDD:465078"
     misc_feature    639..899
                     /gene="NUDC"
                     /note="p23-like NUD (nuclear distribution) C-like domain
                     of mammalian(m) NUDC and similar proteins. Mammalian(m)
                     NUDC associates both with the dynein complex and also with
                     an anti-inflammatory enzyme, platelet activating factor
                     acetylhydrolase I, PAF-AH(I)...; Region: p23_mNUDC_like;
                     cd06492"
                     /db_xref="CDD:107241"
ORIGIN      
        1 tccggctccg ctgcggaagg ccgagaacta gagcggctgg accggacgcg accctaagga
       61 gcggagagcg cgggacgcgt gtgcggagct cagatttcgg agtgaggcta gcggccggca
      121 cgatgggcgg agagcaggag gaggatcggt tcgacggcat gttgctggcc atggcgcagc
      181 agcacgaggg cggcgtgcag gagctcgtga acactttctt cagcttcctt cgacgcaaaa
      241 cagacttttt cgttggagga gaagagggga tggcagagaa gcttatcaca cagaccttca
      301 accaccacaa ccagctggca cagaaggcca ggcgggagaa gagagctcag caggagactg
      361 agcggcggga gaaagcggag cgggcagcca ggctggccaa ggaggccaag tcagagacct
      421 ctgggcccca gatcaaggaa ctgactgatg aggaggccga gaggctgcag ctggaaattg
      481 accaaaaaaa ggatgcagag agtcatgaag cccagctcaa gaatggcagt ctcggctcac
      541 cagggaagca ggaggctgaa gaggctgagg aggaggagga cgagaaggac aaagggaagc
      601 tgaagcccaa tttcggcaat ggggcagacc tgcccagtta ccgctggacc cagaccctgt
      661 cggagctgga cctggcagtg cccttccccg tgaacttccg gctgaagggg aaggacgtgg
      721 tggtggacat ccagcggagg cgcctccggg tggggctcaa ggggcagccg gcgatcgtgg
      781 acggggagct ttacaacgag gtgaaggtgg aggagagctc gtggctcatc gaggacggca
      841 aggtggtgac ggtgcatctg gagaagatca acaagatgga gtggtggagc cgtttggtgt
      901 ccagtgaccc cgagatcaat accaagaaga tcaatcctga gaactccaag ctgtcagacc
      961 tggacagtga gacccgcagc atggtggaga agatgatgta tgaccagaga cagaagtcca
     1021 tggggctgcc cacctcagat gagcagaaga aacaggagat tctgaagaag ttcatggatc
     1081 agcatccaga gatggatttt tccaaggcca aattcaacta gcccctgtgt ttgcctccct
     1141 gaactcttgg ggctgaactc ccagctaccc accttccttt cccacccttc cctgggactt
     1201 gtgggcctca gggctggggc aggcatgggg ctggcccaca caggtctgag ggcatcatgg
     1261 gaaaagggct ggggccttgg gggtgtcttg ttccatttgg cctgctgtta cacattaaaa
     1321 ctatttaccc aattc
//
LOCUS       XM_032609348            4006 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulatory factor X5 (RFX5), transcript
            variant X1, mRNA.
ACCESSION   XM_032609348
VERSION     XM_032609348.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4006
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4006
                     /gene="RFX5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742106"
     CDS             474..2447
                     /gene="RFX5"
                     /codon_start=1
                     /product="DNA-binding protein RFX5 isoform X1"
                     /protein_id="XP_032465239.1"
                     /db_xref="GeneID:116742106"
                     /translation="MVEQAVLVSRQIGAVPAIQKKENKATHEPAGPGPWGWAGVKVAA
                     SPHAGMAEDEPDAKSPKTGGRAPSGSAEAGEPTTLLQRLRGTISKAVQNKVEGILQDV
                     QKFSDNDKLYLYLQLPSGPSTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQ
                     SVYDAYRKYCESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTL
                     VSMPPLPGLDLKGSESPEMGPEVTPAPRDELVEAACALTCDWAERILKRSFSSIVEVA
                     RYLLQQHLISARSAHANVLKAMGLAEEDEHAPRERSSKSKNGVENLEGGAHKRPERQA
                     QPPKELDPRAGAGPPARGERKKSVVESPAPAANNPQVNALVARLPLLLPRAPRSLIPP
                     IRVSPPVLAPKLSSSTLKMATLPLPPRAGGPQAAVPIINMILPTVPALPGPGPGPGPG
                     QAPPGGLTQPRGTENREVGIGGDPGPHDKGVKRTAEVPVSEASGQDPPAKATKQDIED
                     TGSDAKRKRGRPRKKSGGSRERNSTPEKSAAAVDSAQSSRLPLETWASGGEGNSAGGS
                     ERPGPMGEAEKEMLAQGQADGAVSRGGRSPSSRHAKEAEDKIPPVTPKVSVIKGSRSQ
                     KEALHLVKGEVDTAAQGNKDLKGHVLQSSLPHE"
     misc_feature    702..878
                     /gene="RFX5"
                     /note="RFX5 N-terminal domain; Region: RFX5_N; pfam18326"
                     /db_xref="CDD:375753"
     misc_feature    903..1124
                     /gene="RFX5"
                     /note="RFX DNA-binding domain; Region: RFX_DNA_binding;
                     pfam02257"
                     /db_xref="CDD:460512"
     misc_feature    <1458..>1781
                     /gene="RFX5"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    1845..2444
                     /gene="RFX5"
                     /note="RFX5 DNA-binding domain; Region: RFX5_DNA_bdg;
                     pfam14621"
                     /db_xref="CDD:464220"
ORIGIN      
        1 gcagaacttt ggggatgcaa aggcattagc aactctttgg aaggagataa agtacactcg
       61 ggaaacctag gaacactacg ggcactttag cttaacgtgg tacggctact gaggtttggc
      121 ggcctccatc aatgaggaat gtgagcccgt gtttgcaggt ttcttctctg acgaccgaag
      181 gcaaaactga aacacggaaa gagaaagcaa aagcaaagaa agctccagaa ggaggcgagc
      241 acccggtctt tcgtcctgcg gtccctttaa gagaagaacc tcttgggacc ggcagtccca
      301 accgacccca gttttaaccg aaacctaacc cggacttccc cctcttgact caaataagac
      361 caactttgga ttttccctcc cctattgacc aatcagattc tgttaccagg cagactttag
      421 ctgccgccgg tgcgagcccg gcgccttctg tctccgggtg gcagcaacaa ccaatggtag
      481 aacaggccgt cctagtatct aggcagatcg gggctgttcc agccattcag aaaaaagaaa
      541 ataaagcaac gcacgagccc gctgggccag gaccgtgggg ctgggctgga gtgaaggtgg
      601 ctgcgagccc tcatgccggg atggcagaag atgaacctga tgctaagagc ccaaagactg
      661 ggggaagggc cccctcaggt agtgctgagg caggggaacc caccaccctc cttcagaggc
      721 tccgaggtac catttccaag gccgtgcaga acaaagtaga gggaatcctg caagatgtac
      781 agaaattctc agacaacgac aagctgtatc tctaccttca gctcccctca gggcccagta
      841 ctggagacaa aagctcagag ccaagtacac tcagcaatga ggagtacatg tatgcttata
      901 ggtggatccg caaccaccta gaagagcata ctgacacctg cctgccaaaa caaagtgttt
      961 atgatgccta tcggaagtac tgtgagagtc ttgcctgttg ccgcccactc agcacagcca
     1021 actttggcaa aatcatcaga gagatcttcc ctgacatcaa agcccgaagg cttggtggcc
     1081 ggggccagtc caaatattgc tacagtggca tacgaaggaa gaccttggtg tctatgccgc
     1141 ccttgcccgg acttgaccta aagggctctg agagtccaga aatgggccca gaagtaaccc
     1201 cagcacctcg ggatgaactg gttgaagcag cctgtgccct gacctgtgac tgggcagagc
     1261 gaatcctgaa acggtccttc agttccatcg ttgaggtcgc ccgctacctg ctacagcagc
     1321 atctcatctc tgcccgatct gcacacgcca atgtgctcaa ggctatgggg cttgctgaag
     1381 aggatgaaca cgcccctcgg gaacggtcat ctaaatccaa gaatggtgta gagaatctgg
     1441 agggcggagc ccataagaga ccagagagac aggcccagcc tcctaaggag ctggaccccc
     1501 gggctggggc tggcccccca gcacgcggag agcgaaagaa gagtgtagtg gagagcccag
     1561 cgccagcagc caataaccca caggttaatg ccctagtggc ccggctgcct ctgcttctcc
     1621 ctcgggcccc tcgctcgctt attccaccaa tccgagtctc tccacccgtc ctggccccca
     1681 agctttcttc aagcactctg aaaatggcta cactgcctct gccccctaga gctgggggac
     1741 cccaagcagc tgtgcccatc attaacatga tcttaccaac tgttcctgct ttgcctggac
     1801 ctggacctgg gcctgggcct gggcaagctc cacctggggg gctcactcag ccgaggggca
     1861 cagagaacag ggaagtgggc ataggtggtg acccgggacc ccatgacaag ggtgtgaaga
     1921 ggacagctga agtacctgtg agtgaggcca gtgggcagga cccaccagct aaagcaacaa
     1981 agcaggatat agaggataca ggaagtgatg ccaaaagaaa acgagggcgc cctcgaaaaa
     2041 aatcaggtgg aagtagggaa aggaattcta cccctgaaaa gtcagcagct gctgtggact
     2101 ctgcccagtc ctcaaggtta ccactggaga cctgggcctc tggaggggaa ggcaactcag
     2161 ctggagggtc agagaggcca gggccaatgg gagaggctga gaaggagatg cttgcccaag
     2221 gtcaggcgga tggtgctgtt tccagaggag gaaggagccc cagttcccgg catgccaaag
     2281 aagcagaaga taaaattcct cctgtcaccc cgaaagtgag tgtcatcaag ggcagtagaa
     2341 gccaaaagga ggctcttcat ttggtcaagg gagaggtaga cactgcagca cagggtaata
     2401 aagacttaaa ggggcatgtg cttcaaagct ccttacccca tgagtgaaaa gaccccaaag
     2461 caacaccccc atgataggta tgtggggaag agtgctatgt taactctacc tgtctgccta
     2521 gtaggggccc ttctttgcac ttgcttctca cttggctctt cattctcttc tgtatagaca
     2581 gctgaggcac cctgtcttgc atagtgcctg gttcttgcct cttacctttc tagctcaata
     2641 cccttggttt tagagtcact aataaatctg tactgaccat cttacctgga tccctgtgct
     2701 atcctgtgga aatataggga tggagtatga tgaatgtata ggtgaggcat ctttccattt
     2761 taaatcatag aaaacctagc tcaaactggc ttaaaaataa aaatttattg gctcatgtga
     2821 ctggaaagtc cagaggtagt gctggctcca ggtaaagctg atccagtggc tcagtatgtc
     2881 tctaaatacg tgattgattt tcttccccta ctgttctacc ttctgtagga tcaagcctgg
     2941 tccacctcat ggctgccagc actcctagga ttacatgttt tcctcattta tgtccagcca
     3001 gaaagagagg gcatctttgt gccaggaatt gtagcaaaag ccctaagatt cactctggtt
     3061 aggccagcct gggtcacatg cctgccccta accaatcact gtggccagga gtttggtaaa
     3121 tgctagtttg cttatttatt ctacatcatg gactgtacct tttgaaaaat gggcaggatc
     3181 agactcctta gaatcacata gatccctaaa tggaaactgg gagtggggag ttcctgggga
     3241 gacagctgac acctagccac tgctatgaag tacctgtggt tttagcttgc taggctgaga
     3301 ccagctatac ctgctgcttc ttttccaaat agtcttgcat tttccttact gcagctataa
     3361 tctctttctt cttgttccag tctcagaagg aatgagaggg aaatcattct tctttaggga
     3421 ctatctcttt agtctcgttt agatgacagt cccctttctt tacatctcag agatggatat
     3481 ccttcctttt cctgtttccg aattttaggt ttctcctcat tcctgcttcc ctgtccccca
     3541 ccctactgcc tctttcacca tgtagagtga aagatttact ccctagttgt tttattaaat
     3601 tcattctgta tccaccaggt gtcagtctct tgtcatgtac gtgtcaggac ttagccagga
     3661 ttgtggggct taggctatgt gtatggaagg gggtagctgc acatatcagg gagcaccagt
     3721 agggagggaa tccaggtatg tatttggaaa aagcagtaaa ccagctgata ttacttgagg
     3781 acctactgtg tcttctgcat agggcagttt ctgtcaggga ttctcagttt tctttcaggg
     3841 agccttcatt catttgttca tttatttcca ccattgcaga tttttaaaaa ttataatatg
     3901 taatgtttga tatctataaa gaatatattt aaaatggata tattatgaag cataataatt
     3961 aaatgaccca tcacccaatt tgtacattaa aacattagaa atacca
//
LOCUS       XM_032609349            3486 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus regulatory factor X5 (RFX5), transcript
            variant X2, mRNA.
ACCESSION   XM_032609349
VERSION     XM_032609349.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3486
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3486
                     /gene="RFX5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742106"
     CDS             101..1927
                     /gene="RFX5"
                     /codon_start=1
                     /product="DNA-binding protein RFX5 isoform X2"
                     /protein_id="XP_032465240.1"
                     /db_xref="GeneID:116742106"
                     /translation="MAEDEPDAKSPKTGGRAPSGSAEAGEPTTLLQRLRGTISKAVQN
                     KVEGILQDVQKFSDNDKLYLYLQLPSGPSTGDKSSEPSTLSNEEYMYAYRWIRNHLEE
                     HTDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYC
                     YSGIRRKTLVSMPPLPGLDLKGSESPEMGPEVTPAPRDELVEAACALTCDWAERILKR
                     SFSSIVEVARYLLQQHLISARSAHANVLKAMGLAEEDEHAPRERSSKSKNGVENLEGG
                     AHKRPERQAQPPKELDPRAGAGPPARGERKKSVVESPAPAANNPQVNALVARLPLLLP
                     RAPRSLIPPIRVSPPVLAPKLSSSTLKMATLPLPPRAGGPQAAVPIINMILPTVPALP
                     GPGPGPGPGQAPPGGLTQPRGTENREVGIGGDPGPHDKGVKRTAEVPVSEASGQDPPA
                     KATKQDIEDTGSDAKRKRGRPRKKSGGSRERNSTPEKSAAAVDSAQSSRLPLETWASG
                     GEGNSAGGSERPGPMGEAEKEMLAQGQADGAVSRGGRSPSSRHAKEAEDKIPPVTPKV
                     SVIKGSRSQKEALHLVKGEVDTAAQGNKDLKGHVLQSSLPHE"
     misc_feature    182..358
                     /gene="RFX5"
                     /note="RFX5 N-terminal domain; Region: RFX5_N; pfam18326"
                     /db_xref="CDD:375753"
     misc_feature    383..604
                     /gene="RFX5"
                     /note="RFX DNA-binding domain; Region: RFX_DNA_binding;
                     pfam02257"
                     /db_xref="CDD:460512"
     misc_feature    <938..>1261
                     /gene="RFX5"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    1325..1924
                     /gene="RFX5"
                     /note="RFX5 DNA-binding domain; Region: RFX5_DNA_bdg;
                     pfam14621"
                     /db_xref="CDD:464220"
ORIGIN      
        1 ctgggctgga gtgaaggtgg ctgcgaggta gtttctcttt ctcccttacc tttattgttg
       61 cttgtgttgg aaggcgacta ttcaaagccc tcatgccggg atggcagaag atgaacctga
      121 tgctaagagc ccaaagactg ggggaagggc cccctcaggt agtgctgagg caggggaacc
      181 caccaccctc cttcagaggc tccgaggtac catttccaag gccgtgcaga acaaagtaga
      241 gggaatcctg caagatgtac agaaattctc agacaacgac aagctgtatc tctaccttca
      301 gctcccctca gggcccagta ctggagacaa aagctcagag ccaagtacac tcagcaatga
      361 ggagtacatg tatgcttata ggtggatccg caaccaccta gaagagcata ctgacacctg
      421 cctgccaaaa caaagtgttt atgatgccta tcggaagtac tgtgagagtc ttgcctgttg
      481 ccgcccactc agcacagcca actttggcaa aatcatcaga gagatcttcc ctgacatcaa
      541 agcccgaagg cttggtggcc ggggccagtc caaatattgc tacagtggca tacgaaggaa
      601 gaccttggtg tctatgccgc ccttgcccgg acttgaccta aagggctctg agagtccaga
      661 aatgggccca gaagtaaccc cagcacctcg ggatgaactg gttgaagcag cctgtgccct
      721 gacctgtgac tgggcagagc gaatcctgaa acggtccttc agttccatcg ttgaggtcgc
      781 ccgctacctg ctacagcagc atctcatctc tgcccgatct gcacacgcca atgtgctcaa
      841 ggctatgggg cttgctgaag aggatgaaca cgcccctcgg gaacggtcat ctaaatccaa
      901 gaatggtgta gagaatctgg agggcggagc ccataagaga ccagagagac aggcccagcc
      961 tcctaaggag ctggaccccc gggctggggc tggcccccca gcacgcggag agcgaaagaa
     1021 gagtgtagtg gagagcccag cgccagcagc caataaccca caggttaatg ccctagtggc
     1081 ccggctgcct ctgcttctcc ctcgggcccc tcgctcgctt attccaccaa tccgagtctc
     1141 tccacccgtc ctggccccca agctttcttc aagcactctg aaaatggcta cactgcctct
     1201 gccccctaga gctgggggac cccaagcagc tgtgcccatc attaacatga tcttaccaac
     1261 tgttcctgct ttgcctggac ctggacctgg gcctgggcct gggcaagctc cacctggggg
     1321 gctcactcag ccgaggggca cagagaacag ggaagtgggc ataggtggtg acccgggacc
     1381 ccatgacaag ggtgtgaaga ggacagctga agtacctgtg agtgaggcca gtgggcagga
     1441 cccaccagct aaagcaacaa agcaggatat agaggataca ggaagtgatg ccaaaagaaa
     1501 acgagggcgc cctcgaaaaa aatcaggtgg aagtagggaa aggaattcta cccctgaaaa
     1561 gtcagcagct gctgtggact ctgcccagtc ctcaaggtta ccactggaga cctgggcctc
     1621 tggaggggaa ggcaactcag ctggagggtc agagaggcca gggccaatgg gagaggctga
     1681 gaaggagatg cttgcccaag gtcaggcgga tggtgctgtt tccagaggag gaaggagccc
     1741 cagttcccgg catgccaaag aagcagaaga taaaattcct cctgtcaccc cgaaagtgag
     1801 tgtcatcaag ggcagtagaa gccaaaagga ggctcttcat ttggtcaagg gagaggtaga
     1861 cactgcagca cagggtaata aagacttaaa ggggcatgtg cttcaaagct ccttacccca
     1921 tgagtgaaaa gaccccaaag caacaccccc atgataggta tgtggggaag agtgctatgt
     1981 taactctacc tgtctgccta gtaggggccc ttctttgcac ttgcttctca cttggctctt
     2041 cattctcttc tgtatagaca gctgaggcac cctgtcttgc atagtgcctg gttcttgcct
     2101 cttacctttc tagctcaata cccttggttt tagagtcact aataaatctg tactgaccat
     2161 cttacctgga tccctgtgct atcctgtgga aatataggga tggagtatga tgaatgtata
     2221 ggtgaggcat ctttccattt taaatcatag aaaacctagc tcaaactggc ttaaaaataa
     2281 aaatttattg gctcatgtga ctggaaagtc cagaggtagt gctggctcca ggtaaagctg
     2341 atccagtggc tcagtatgtc tctaaatacg tgattgattt tcttccccta ctgttctacc
     2401 ttctgtagga tcaagcctgg tccacctcat ggctgccagc actcctagga ttacatgttt
     2461 tcctcattta tgtccagcca gaaagagagg gcatctttgt gccaggaatt gtagcaaaag
     2521 ccctaagatt cactctggtt aggccagcct gggtcacatg cctgccccta accaatcact
     2581 gtggccagga gtttggtaaa tgctagtttg cttatttatt ctacatcatg gactgtacct
     2641 tttgaaaaat gggcaggatc agactcctta gaatcacata gatccctaaa tggaaactgg
     2701 gagtggggag ttcctgggga gacagctgac acctagccac tgctatgaag tacctgtggt
     2761 tttagcttgc taggctgaga ccagctatac ctgctgcttc ttttccaaat agtcttgcat
     2821 tttccttact gcagctataa tctctttctt cttgttccag tctcagaagg aatgagaggg
     2881 aaatcattct tctttaggga ctatctcttt agtctcgttt agatgacagt cccctttctt
     2941 tacatctcag agatggatat ccttcctttt cctgtttccg aattttaggt ttctcctcat
     3001 tcctgcttcc ctgtccccca ccctactgcc tctttcacca tgtagagtga aagatttact
     3061 ccctagttgt tttattaaat tcattctgta tccaccaggt gtcagtctct tgtcatgtac
     3121 gtgtcaggac ttagccagga ttgtggggct taggctatgt gtatggaagg gggtagctgc
     3181 acatatcagg gagcaccagt agggagggaa tccaggtatg tatttggaaa aagcagtaaa
     3241 ccagctgata ttacttgagg acctactgtg tcttctgcat agggcagttt ctgtcaggga
     3301 ttctcagttt tctttcaggg agccttcatt catttgttca tttatttcca ccattgcaga
     3361 tttttaaaaa ttataatatg taatgtttga tatctataaa gaatatattt aaaatggata
     3421 tattatgaag cataataatt aaatgaccca tcacccaatt tgtacattaa aacattagaa
     3481 atacca
//
LOCUS       XM_032609356            1376 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh blood group CcEe antigens (RHCE),
            transcript variant X1, mRNA.
ACCESSION   XM_032609356
VERSION     XM_032609356.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1376
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1376
                     /gene="RHCE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742131"
     CDS             25..1362
                     /gene="RHCE"
                     /codon_start=1
                     /product="blood group Rh(CE) polypeptide isoform X1"
                     /protein_id="XP_032465247.1"
                     /db_xref="GeneID:116742131"
                     /translation="MGSKYQKSVRGPLTLWAFMLEVTLILIFFFFTSYETSVKEQKKL
                     MRTYREFQDVIIMAVLGLGFLNTSLRRHCWSSVAFSLFVLALGVQLTVLLDGFLNQLS
                     LRKMVLNLSSIQISTMSATSVLISVGVILGKVNLLQLLLMTLIEVTAFSATRMVGKEV
                     FNMDNHISMMYIHVFAACFGLTVACCLPKPLPNEAEDKQQTATSPSLFAMLGTLFLWM
                     FWPSFNSALLDIPDEKKKALFNTYYALAVSMVTAISVSALAHPQGKINMTHIHNAVLA
                     GGVAVGAPCYLIPSPWLAMVLGLLAGLISIWGAMYLQVCLQRTLDLHDTYGVQYTFGL
                     PGLLGGITNIVLMALQVKWTKISTLGYQILTDSGAFSFTVIMGVGSGLLTGMLLNLKI
                     WKSPHVVNYFNDQTFWKLAGEKTQGRPKNNLQTLERLSCRRGKRFFSMLLQRI"
     misc_feature    73..1200
                     /gene="RHCE"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 ctgacgcaca cagacggaca caggatgggc tctaagtacc aaaagtctgt gcggggcccg
       61 ctgaccctgt gggcctttat gctggaggtg actctcattc tcatcttctt ctttttcacc
      121 tcctatgaaa cttctgtaaa ggaacagaag aagctcatga ggacctatcg agaattccag
      181 gatgttatca tcatggcagt ccttggcttg ggtttcctca acacatcttt gcggagacac
      241 tgctggagca gcgtggcctt cagtctcttc gtgctggccc tcggggtgca gctgacagtc
      301 ctgctggatg gcttcctgaa ccaactctcc cttaggaaga tggtcctcaa tctttccagt
      361 attcagatat ccaccatgag cgctacatct gtgctgatct cagtgggtgt catcctgggg
      421 aaggtcaacc tgctgcagct gctgttgatg acattgatag aggtgacagc ctttagtgcc
      481 acgaggatgg tcggcaagga agtcttcaat atggacaacc acataagcat gatgtacatc
      541 cacgtgtttg cggcctgttt cgggctgact gtggcctgct gcctcccgaa gcctctgcct
      601 aatgaagcgg aggacaaaca acagacggcc acgagcccca gtttgttcgc catgctgggc
      661 accctcttct tgtggatgtt ctggccgagt ttcaactccg ctctgctgga cattccagac
      721 gaaaagaaga aggccttgtt caacacctac tacgcccttg ctgtcagcat ggtgacagcc
      781 atctcagtgt cagccttggc gcaccctcaa gggaagatca acatgactca catccacaat
      841 gcggtgctgg caggaggtgt ggctgtgggc gccccctgtt acctgatccc ttctccttgg
      901 cttgccatgg tgctgggtct cctggctggg ctgatctcca tctggggagc catgtacctg
      961 caggtgtgtc ttcaacgaac gctggacctc catgacacct atggcgtgca atataccttc
     1021 ggcttgccgg gtctgctcgg agggatcacc aacattgtgc tgatggcgct tcaggtcaag
     1081 tggaccaaga tttccacgct tggctaccag atactcactg actccggggc attcagcttc
     1141 accgtcatta tgggtgtggg atctggtctt ctgacaggta tgctcttaaa cctcaaaata
     1201 tggaagtcac ctcacgtggt taactatttt aatgaccaaa ctttctggaa gcttgcagga
     1261 gagaagaccc aagggagacc taaaaacaat cttcaaacac ttgagagact gtcatgtaga
     1321 agagggaaaa gatttttttc tatgcttctc caaagaattt aactagtccc agtggg
//
LOCUS       XM_032609362            2114 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh blood group CcEe antigens (RHCE),
            transcript variant X2, mRNA.
ACCESSION   XM_032609362
VERSION     XM_032609362.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2114
                     /gene="RHCE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 133 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742131"
     CDS             25..1278
                     /gene="RHCE"
                     /codon_start=1
                     /product="blood group Rh(CE) polypeptide isoform X2"
                     /protein_id="XP_032465253.1"
                     /db_xref="GeneID:116742131"
                     /translation="MGSKYQKSVRGPLTLWAFMLEVTLILIFFFFTSYETSVKEQKKL
                     MRTYREFQDVIIMAVLGLGFLNTSLRRHCWSSVAFSLFVLALGVQLTVLLDGFLNQLS
                     LRKMVLNLSSIQISTMSATSVLISVGVILGKVNLLQLLLMTLIEVTAFSATRMVGKEV
                     FNMDNHISMMYIHVFAACFGLTVACCLPKPLPNEAEDKQQTATSPSLFAMLGTLFLWM
                     FWPSFNSALLDIPDEKKKALFNTYYALAVSMVTAISVSALAHPQGKINMTHIHNAVLA
                     GGVAVGAPCYLIPSPWLAMVLGLLAGLISIWGAMYLQVCLQRTLDLHDTYGVQYTFGL
                     PGLLGGITNIVLMALQVKWTKISTLGYQILTDSGAFSFTVIMGVGSGLLTGMLLNLKI
                     WKSPHVVNYFNDQTFWKFPHLAVGY"
     misc_feature    73..1200
                     /gene="RHCE"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 ctgacgcaca cagacggaca caggatgggc tctaagtacc aaaagtctgt gcggggcccg
       61 ctgaccctgt gggcctttat gctggaggtg actctcattc tcatcttctt ctttttcacc
      121 tcctatgaaa cttctgtaaa ggaacagaag aagctcatga ggacctatcg agaattccag
      181 gatgttatca tcatggcagt ccttggcttg ggtttcctca acacatcttt gcggagacac
      241 tgctggagca gcgtggcctt cagtctcttc gtgctggccc tcggggtgca gctgacagtc
      301 ctgctggatg gcttcctgaa ccaactctcc cttaggaaga tggtcctcaa tctttccagt
      361 attcagatat ccaccatgag cgctacatct gtgctgatct cagtgggtgt catcctgggg
      421 aaggtcaacc tgctgcagct gctgttgatg acattgatag aggtgacagc ctttagtgcc
      481 acgaggatgg tcggcaagga agtcttcaat atggacaacc acataagcat gatgtacatc
      541 cacgtgtttg cggcctgttt cgggctgact gtggcctgct gcctcccgaa gcctctgcct
      601 aatgaagcgg aggacaaaca acagacggcc acgagcccca gtttgttcgc catgctgggc
      661 accctcttct tgtggatgtt ctggccgagt ttcaactccg ctctgctgga cattccagac
      721 gaaaagaaga aggccttgtt caacacctac tacgcccttg ctgtcagcat ggtgacagcc
      781 atctcagtgt cagccttggc gcaccctcaa gggaagatca acatgactca catccacaat
      841 gcggtgctgg caggaggtgt ggctgtgggc gccccctgtt acctgatccc ttctccttgg
      901 cttgccatgg tgctgggtct cctggctggg ctgatctcca tctggggagc catgtacctg
      961 caggtgtgtc ttcaacgaac gctggacctc catgacacct atggcgtgca atataccttc
     1021 ggcttgccgg gtctgctcgg agggatcacc aacattgtgc tgatggcgct tcaggtcaag
     1081 tggaccaaga tttccacgct tggctaccag atactcactg actccggggc attcagcttc
     1141 accgtcatta tgggtgtggg atctggtctt ctgacaggta tgctcttaaa cctcaaaata
     1201 tggaagtcac ctcacgtggt taactatttt aatgaccaaa ctttctggaa gtttccacat
     1261 ttggctgttg gatattaagc gaaagcaacc aagaaaaaca agggctgttt gaaaacaacc
     1321 tcttttcact gttgcccatt tttttgtgtg tgcgacactc attacagcaa agtctcatgt
     1381 ccaatgaaac aggtgagaga tagacttgat attaaaaata aaagactaaa aacataaggg
     1441 ataattttat attataataa ttttaaataa ttatgtttgg tttcatgaaa gataatggta
     1501 tcattatttt cttggatgca gacacacagt tcacaaaatt aaggttttgg ttcaatttta
     1561 ttgacaattt agatcctttc ttgcgcttag taaagtatta agctatcagt taactcatct
     1621 acatcagcaa agcagatgat ataaaacagg ggaaaactaa gaactcactt agatttagcc
     1681 cttgcagaca ctgtgctttt attccagtgg ttttacaagg agttcctact ccctgagcat
     1741 atcctgaatt taactgtggg gaagaaattc gtggtcaaag gtggagatac actgcctcaa
     1801 gatttaaaaa ctagttctat gaccttgagg aaatcattta aattgccatg gtccgggttc
     1861 ccttatctgt aagaagagaa ggtgaacttc aacccctaag atcgcctcca cttctcacat
     1921 cctgtggatc taaaacctca ccaggagtga tttgctgtga gatgagaaca acacagccgt
     1981 ttctttgaat agtcgatgac caggcaacat tcaaattgta cacactggga gaaaaagatg
     2041 gctgacatag aaaggggacc actgggactt ccctggtggt ccagtggtaa agaatctgcc
     2101 ttccaacgcg gggg
//
LOCUS       XM_032609369            2034 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh blood group CcEe antigens (RHCE),
            transcript variant X3, mRNA.
ACCESSION   XM_032609369
VERSION     XM_032609369.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2034
                     /gene="RHCE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742131"
     CDS             25..1143
                     /gene="RHCE"
                     /codon_start=1
                     /product="blood group Rh(CE) polypeptide isoform X3"
                     /protein_id="XP_032465260.1"
                     /db_xref="GeneID:116742131"
                     /translation="MGSKYQKSVRGPLTLWAFMLEVTLILIFFFFTSYETSVKEQKKL
                     MRTYREFQDVIIMAVLGLGFLNTSLRRHCWSSVAFSLFVLALGVQLTVLLDGFLNQLS
                     LRKMVLNLSSIQISTMSATSVLISVGVILGKVNLLQLLLMTLIEVTAFSATRMVGKEV
                     FNMDNHISMMYIHVFAACFGLTVACCLPKPLPNEAEDKQQTATSPSLFAMLGTLFLWM
                     FWPSFNSALLDIPDEKKKALFNTYYALAVSMVTAISVSALAHPQGKINMTHIHNAVLA
                     GGVAVGAPCYLIPSPWLAMVLGLLAGLISIWGAMYLQVCLQRTLDLHDTYGVQYTFGL
                     PGLLGGITNIVLMALQVKWTKISTYALKPQNMEVTSRG"
     misc_feature    73..1107
                     /gene="RHCE"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 ctgacgcaca cagacggaca caggatgggc tctaagtacc aaaagtctgt gcggggcccg
       61 ctgaccctgt gggcctttat gctggaggtg actctcattc tcatcttctt ctttttcacc
      121 tcctatgaaa cttctgtaaa ggaacagaag aagctcatga ggacctatcg agaattccag
      181 gatgttatca tcatggcagt ccttggcttg ggtttcctca acacatcttt gcggagacac
      241 tgctggagca gcgtggcctt cagtctcttc gtgctggccc tcggggtgca gctgacagtc
      301 ctgctggatg gcttcctgaa ccaactctcc cttaggaaga tggtcctcaa tctttccagt
      361 attcagatat ccaccatgag cgctacatct gtgctgatct cagtgggtgt catcctgggg
      421 aaggtcaacc tgctgcagct gctgttgatg acattgatag aggtgacagc ctttagtgcc
      481 acgaggatgg tcggcaagga agtcttcaat atggacaacc acataagcat gatgtacatc
      541 cacgtgtttg cggcctgttt cgggctgact gtggcctgct gcctcccgaa gcctctgcct
      601 aatgaagcgg aggacaaaca acagacggcc acgagcccca gtttgttcgc catgctgggc
      661 accctcttct tgtggatgtt ctggccgagt ttcaactccg ctctgctgga cattccagac
      721 gaaaagaaga aggccttgtt caacacctac tacgcccttg ctgtcagcat ggtgacagcc
      781 atctcagtgt cagccttggc gcaccctcaa gggaagatca acatgactca catccacaat
      841 gcggtgctgg caggaggtgt ggctgtgggc gccccctgtt acctgatccc ttctccttgg
      901 cttgccatgg tgctgggtct cctggctggg ctgatctcca tctggggagc catgtacctg
      961 caggtgtgtc ttcaacgaac gctggacctc catgacacct atggcgtgca atataccttc
     1021 ggcttgccgg gtctgctcgg agggatcacc aacattgtgc tgatggcgct tcaggtcaag
     1081 tggaccaaga tttccacgta tgctcttaaa cctcaaaata tggaagtcac ctcacgtggt
     1141 taactatttt aatgaccaaa ctttctggaa gtttccacat ttggctgttg gatattaagc
     1201 gaaagcaacc aagaaaaaca agggctgttt gaaaacaacc tcttttcact gttgcccatt
     1261 tttttgtgtg tgcgacactc attacagcaa agtctcatgt ccaatgaaac aggtgagaga
     1321 tagacttgat attaaaaata aaagactaaa aacataaggg ataattttat attataataa
     1381 ttttaaataa ttatgtttgg tttcatgaaa gataatggta tcattatttt cttggatgca
     1441 gacacacagt tcacaaaatt aaggttttgg ttcaatttta ttgacaattt agatcctttc
     1501 ttgcgcttag taaagtatta agctatcagt taactcatct acatcagcaa agcagatgat
     1561 ataaaacagg ggaaaactaa gaactcactt agatttagcc cttgcagaca ctgtgctttt
     1621 attccagtgg ttttacaagg agttcctact ccctgagcat atcctgaatt taactgtggg
     1681 gaagaaattc gtggtcaaag gtggagatac actgcctcaa gatttaaaaa ctagttctat
     1741 gaccttgagg aaatcattta aattgccatg gtccgggttc ccttatctgt aagaagagaa
     1801 ggtgaacttc aacccctaag atcgcctcca cttctcacat cctgtggatc taaaacctca
     1861 ccaggagtga tttgctgtga gatgagaaca acacagccgt ttctttgaat agtcgatgac
     1921 caggcaacat tcaaattgta cacactggga gaaaaagatg gctgacatag aaaggggacc
     1981 actgggactt ccctggtggt ccagtggtaa agaatctgcc ttccaacgcg gggg
//
LOCUS       XM_032609377            1061 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rh blood group CcEe antigens (RHCE),
            transcript variant X4, mRNA.
ACCESSION   XM_032609377
VERSION     XM_032609377.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1061
                     /gene="RHCE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742131"
     CDS             25..1047
                     /gene="RHCE"
                     /codon_start=1
                     /product="blood group Rh(CE) polypeptide isoform X4"
                     /protein_id="XP_032465268.1"
                     /db_xref="GeneID:116742131"
                     /translation="MGSKYQKSVRGPLTLWAFMLEVTLILIFFFFTSYETSVKEQKKL
                     MRTYREFQDVIIMAVLGLGFLNTSLRRHCWSSVAFSLFVLALGVQLTVLLDGFLNQLS
                     LRKMVLNLSSIQISTMSATSVLISVGVILGKVNLLQLLLMTLIEVTAFSATRMVGKEV
                     FNTHIHNAVLAGGVAVGAPCYLIPSPWLAMVLGLLAGLISIWGAMYLQVCLQRTLDLH
                     DTYGVQYTFGLPGLLGGITNIVLMALQVKWTKISTLGYQILTDSGAFSFTVIMGVGSG
                     LLTGMLLNLKIWKSPHVVNYFNDQTFWKLAGEKTQGRPKNNLQTLERLSCRRGKRFFS
                     MLLQRI"
     misc_feature    <511..885
                     /gene="RHCE"
                     /note="Ammonium Transporter Family; Region:
                     Ammonium_transp; cl03012"
                     /db_xref="CDD:445985"
ORIGIN      
        1 ctgacgcaca cagacggaca caggatgggc tctaagtacc aaaagtctgt gcggggcccg
       61 ctgaccctgt gggcctttat gctggaggtg actctcattc tcatcttctt ctttttcacc
      121 tcctatgaaa cttctgtaaa ggaacagaag aagctcatga ggacctatcg agaattccag
      181 gatgttatca tcatggcagt ccttggcttg ggtttcctca acacatcttt gcggagacac
      241 tgctggagca gcgtggcctt cagtctcttc gtgctggccc tcggggtgca gctgacagtc
      301 ctgctggatg gcttcctgaa ccaactctcc cttaggaaga tggtcctcaa tctttccagt
      361 attcagatat ccaccatgag cgctacatct gtgctgatct cagtgggtgt catcctgggg
      421 aaggtcaacc tgctgcagct gctgttgatg acattgatag aggtgacagc ctttagtgcc
      481 acgaggatgg tcggcaagga agtcttcaat actcacatcc acaatgcggt gctggcagga
      541 ggtgtggctg tgggcgcccc ctgttacctg atcccttctc cttggcttgc catggtgctg
      601 ggtctcctgg ctgggctgat ctccatctgg ggagccatgt acctgcaggt gtgtcttcaa
      661 cgaacgctgg acctccatga cacctatggc gtgcaatata ccttcggctt gccgggtctg
      721 ctcggaggga tcaccaacat tgtgctgatg gcgcttcagg tcaagtggac caagatttcc
      781 acgcttggct accagatact cactgactcc ggggcattca gcttcaccgt cattatgggt
      841 gtgggatctg gtcttctgac aggtatgctc ttaaacctca aaatatggaa gtcacctcac
      901 gtggttaact attttaatga ccaaactttc tggaagcttg caggagagaa gacccaaggg
      961 agacctaaaa acaatcttca aacacttgag agactgtcat gtagaagagg gaaaagattt
     1021 ttttctatgc ttctccaaag aatttaacta gtcccagtgg g
//
LOCUS       XM_032609390            3856 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ferric chelate reductase 1 (FRRS1),
            transcript variant X1, mRNA.
ACCESSION   XM_032609390
VERSION     XM_032609390.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3856
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3856
                     /gene="FRRS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742153"
     CDS             8..1840
                     /gene="FRRS1"
                     /codon_start=1
                     /product="ferric-chelate reductase 1 isoform X1"
                     /protein_id="XP_032465281.1"
                     /db_xref="GeneID:116742153"
                     /translation="MDGIMEVPVRRQNMGRKKSEMAVPGFTLGAFILLLLVSSVANYP
                     NGKVTKSCHGMIPEHGHTPQSDPPCYISVSQMTFRPGEKIKVTLSGPLFKGFLLEARD
                     ENLTGPPIGSFTLIDSQVSQLLTCEDIQGSAVSHTSPSNKAEIEVYWNAPSSAPNHIK
                     FLATVVEKYDIYWVKIPGPVISQPNVLPFTTPKATIAPMPTLPPVSHLTKSFNASDCG
                     NKKFCIRSPLNCDPEKELACVFLSFTRDAKSVMVEMSGPSKGYLSFAFSHDQWMGDDD
                     AYLCILEDQTVHIQPSHLTGRSHPVMDSRDPLEDMAWRLADGVMQCSFRRNITFPGVK
                     NRFDLNASYYIFLADGAADHGRIHKHSQQPLITYDKYNVTGYPENIGGSHSLLLLKVH
                     GALMFVAWMTTVSVGVLIARFFKPVWLKALFGDAAWFQVHRMLMLTTSALTFIAFLLP
                     FIYRGGWNWHAGYHPYLGCIVMILAVLQLLLAAFRPPLHDPRRQMFKWTHWSMGTAAR
                     IIAVATMFLGMDLPGLNLPGPWKTYAMIGFVAWHVGTEIVLEVHTYRLSRKDEILDDD
                     RIQILQSLTTAEAEGYAFKKAVLAIYVCGNLTLLTMFLSAINHL"
     misc_feature    161..529
                     /gene="FRRS1"
                     /note="Reeler domain; Region: Reeler; pfam02014"
                     /db_xref="CDD:460411"
     misc_feature    638..1126
                     /gene="FRRS1"
                     /note="DOMON domain of stromal cell-derived receptor 2
                     (ferric chelate reductase 1) and related proteins; Region:
                     DOMON_SDR_2_like; cd09628"
                     /db_xref="CDD:187686"
     misc_feature    order(788..790,794..799,821..823,836..844,1049..1051,
                     1055..1057,1076..1078,1085..1087)
                     /gene="FRRS1"
                     /note="putative heme binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187686"
     misc_feature    1022..1660
                     /gene="FRRS1"
                     /note="Eukaryotic cytochrome b(561), including the FRRS1
                     gene product; Region: Cyt_b561_FRRS1_like; cd08760"
                     /db_xref="CDD:176490"
     misc_feature    order(1181..1183,1301..1303,1397..1399,1505..1507)
                     /gene="FRRS1"
                     /note="putative heme binding sites [chemical binding];
                     other site"
                     /db_xref="CDD:176490"
ORIGIN      
        1 gaatttgatg gatggcataa tggaggtccc agttagaaga cagaacatgg ggaggaaaaa
       61 aagtgagatg gcagttcctg gatttaccct tggtgccttc atacttctgt tgctcgttag
      121 ttctgtggct aattatccca atggaaaagt aacgaagtcg tgccatggaa tgattcctga
      181 acatggtcat actccacagt ctgatccccc ttgctacatc tcagtgagtc agatgacatt
      241 caggccagga gagaagatca aagttacttt gtcagggcca ctatttaaag gctttctctt
      301 agaagcgcgt gatgagaatt tgactggccc tcctattggc tccttcacat tgattgacag
      361 tcaagtgtca cagcttctga cctgtgaaga tatacaggga tcagctgtga gtcacacaag
      421 tccatccaat aaagcagaaa ttgaagtcta ttggaatgct ccaagcagtg ccccaaacca
      481 cataaagttt ctagccacag ttgttgagaa gtacgatatc tactgggtga agattcctgg
      541 tcctgtaatt tcacaaccaa atgtccttcc ttttacaaca cctaaagcta caatagcacc
      601 tatgccaaca ttacctccag tctcccattt aacgaaatca ttcaatgctt cagattgtgg
      661 gaacaagaag ttctgtatta ggagtccttt gaactgtgac ccggagaaag agcttgcctg
      721 tgtcttcttg tccttcacac gagatgccaa gtcagtgatg gttgaaatga gcggtcccag
      781 taaaggctat ttatcctttg cattttctca cgaccaatgg atgggtgatg atgatgctta
      841 tctgtgtatt cttgaagatc agactgtgca catacaacct tcccatctga cagggcgaag
      901 tcaccctgta atggactcca gggatcctct tgaggatatg gcttggaggt tggcagatgg
      961 tgttatgcag tgttctttca gaagaaacat tacctttcct ggggttaaga atagatttga
     1021 tctaaatgca agctactaca tatttctagc agatggtgca gctgatcatg gtcggattca
     1081 taagcattct cagcaacctt tgattacata tgacaaatac aatgtgacag gctatccaga
     1141 gaacatagga ggatcccatt ctttactcct tctgaaggtt catggtgcct taatgtttgt
     1201 ggcatggatg actacagtta gcgtaggtgt actgattgcc cggttcttca aacctgtttg
     1261 gttaaaggct ttatttggtg atgcagcttg gtttcaggta catcgaatgc tcatgcttac
     1321 tacttctgcc ctcactttca ttgcttttct tctgcctttt atttacagag gaggctggaa
     1381 ttggcatgca ggttatcacc cctaccttgg ttgtatagtg atgattttag cagttcttca
     1441 gcttcttttg gcagccttca gaccaccttt acatgaccca agaaggcaaa tgtttaagtg
     1501 gactcactgg agtatgggaa cagctgctag aataatagca gtggcaacaa tgttcctggg
     1561 aatggattta ccaggattga atcttcctgg gccatggaaa acctatgcaa tgattggatt
     1621 tgtagcctgg catgttggga cagagattgt tctggaggtg cacacttacc gactctctag
     1681 aaaagatgaa atattggatg atgatagaat tcagatcctc cagtcactta ctacagctga
     1741 agcagaaggt tatgctttta aaaaggcagt gttagcaatt tacgtctgtg ggaatttgac
     1801 tcttctcact atgttcttat ctgcaatcaa ccatctatga gtgagcgaag accttggctt
     1861 ttgcagacca ggtgataatt atcatcaagc caaaaaactt gatgcctgta tcgactggag
     1921 cgtattcatg acttctaatt aggaagacca ggccatgtct gtagagaaat tcagaagtct
     1981 ggcctttaga gatcaacatt cactagggtc ctatgggcta caaactgatg tcaagctttt
     2041 acgtattatt ctgagtctta aagggaagat tgtacttgag gagaaatgac tcaaatattt
     2101 tttatgctga agttttaaga atgttagcat ggaagaaaat aactgtttgg aaaaacataa
     2161 aagatgtcat aggataaaat gcagatagta ttaatgtaaa tatattttgg actataaagg
     2221 tactgtggta ctttaaagaa aacatttatt tttactagtt tatctgaatg gtcttttttt
     2281 aggatttttg tccccttgcc ccctttctta aaaatttttt ggaaacacgt ttttcggtcc
     2341 agtgttttgg acgtatcctt tgtttcatgt attttgttac ttccctggta aaggtgaaag
     2401 tagggctaac accatttcat taacatttaa atatattact aatattataa tttctttctt
     2461 agcagtgaaa tgcaagtgtg catcttctga ttaagagtgt ctttatatat tcagctacag
     2521 agctaaaatg gcattctata tgctaattgt tttgactctg aggttgtctt agcctttgga
     2581 gattgtagac ttgcatttca aaattaataa aattcactct tgtgaatata tttaagagtt
     2641 attctttgtc cttgtggtaa taaaataata tgggtggtac tgttttgtta gaagatcctg
     2701 atgctataat gaattagaat tatcaatgtt atttcccttc cggttccaat aatttctatt
     2761 ttatgactgg gtcttatgtt tgctatgagg acttctagcc agtgggtggc gccataatac
     2821 tactgctttg ttactgttca cttgtgctga ttcattttta gtacttagat agtatcttgg
     2881 gatggcattt ctcttaaaat tcaccaactc ttaatattta tttgaaaaat ttctgtcttt
     2941 ttctcttttc ctaacagata taggttacaa gctgaaatta gggaccaatg tttttatttt
     3001 gtggtttcaa ttctatttgt tttctaacca tgattgttta taaccgttgt ttgatacttc
     3061 cctttacatt cccatgacct tgtaacaaat gaacataact atcttaggca gaggaaacaa
     3121 gcaaaactct acattcttaa aataaaaagt ttagggaggc atattttact tttttatgtg
     3181 ttctttctga ttggtccaag gacctaaatt ctatatggca taaataatag cctcagcgat
     3241 gtatcttaca tctttcactg ggtaaaatga tatgtttttg ttctttatac aggtgtttat
     3301 cataagtagc ttagggtttg agatgtgaac tttctgtgtt tatgttctat aagtgccagg
     3361 ctatttacag tctaaacttt ccttttgaac gtctttattt aaaaacgttt tgtttagtat
     3421 agaaagttaa atgtatacta aaatattttc ctctaacttt caattattag gggcctaaag
     3481 gttaataaaa ttctcttaat aaattatatt atacatttga caaggaaaaa tttgtttaag
     3541 gagaagatga accttggtgg gttttgtttt caaattcgtg agcttgctgg atttccagtg
     3601 ctgaggctaa cctattttaa cttttctttt tcattgattc atctgttggc actattttga
     3661 tatatcatca attgatatac agagttgtcc aaagaagtct ttgtcatcta accttagtag
     3721 accaacaaac cttttcatta atatcaaatt atgattcttc tgcttatgaa tggttgacat
     3781 ctacaaattg aaaatgccta ttcgttgctc ctctcagttt tccttcttga ttttgtaata
     3841 aacaatgttt tttttt
//
LOCUS       XM_032609398            3906 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ferric chelate reductase 1 (FRRS1),
            transcript variant X2, mRNA.
ACCESSION   XM_032609398
VERSION     XM_032609398.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3906
                     /gene="FRRS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 5
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116742153"
     CDS             118..1890
                     /gene="FRRS1"
                     /codon_start=1
                     /product="ferric-chelate reductase 1 isoform X2"
                     /protein_id="XP_032465289.1"
                     /db_xref="GeneID:116742153"
                     /translation="MAVPGFTLGAFILLLLVSSVANYPNGKVTKSCHGMIPEHGHTPQ
                     SDPPCYISVSQMTFRPGEKIKVTLSGPLFKGFLLEARDENLTGPPIGSFTLIDSQVSQ
                     LLTCEDIQGSAVSHTSPSNKAEIEVYWNAPSSAPNHIKFLATVVEKYDIYWVKIPGPV
                     ISQPNVLPFTTPKATIAPMPTLPPVSHLTKSFNASDCGNKKFCIRSPLNCDPEKELAC
                     VFLSFTRDAKSVMVEMSGPSKGYLSFAFSHDQWMGDDDAYLCILEDQTVHIQPSHLTG
                     RSHPVMDSRDPLEDMAWRLADGVMQCSFRRNITFPGVKNRFDLNASYYIFLADGAADH
                     GRIHKHSQQPLITYDKYNVTGYPENIGGSHSLLLLKVHGALMFVAWMTTVSVGVLIAR
                     FFKPVWLKALFGDAAWFQVHRMLMLTTSALTFIAFLLPFIYRGGWNWHAGYHPYLGCI
                     VMILAVLQLLLAAFRPPLHDPRRQMFKWTHWSMGTAARIIAVATMFLGMDLPGLNLPG
                     PWKTYAMIGFVAWHVGTEIVLEVHTYRLSRKDEILDDDRIQILQSLTTAEAEGYAFKK
                     AVLAIYVCGNLTLLTMFLSAINHL"
     misc_feature    211..579
                     /gene="FRRS1"
                     /note="Reeler domain; Region: Reeler; pfam02014"
                     /db_xref="CDD:460411"
     misc_feature    688..1176
                     /gene="FRRS1"
                     /note="DOMON domain of stromal cell-derived receptor 2
                     (ferric chelate reductase 1) and related proteins; Region:
                     DOMON_SDR_2_like; cd09628"
                     /db_xref="CDD:187686"
     misc_feature    order(838..840,844..849,871..873,886..894,1099..1101,
                     1105..1107,1126..1128,1135..1137)
                     /gene="FRRS1"
                     /note="putative heme binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187686"
     misc_feature    1072..1710
                     /gene="FRRS1"
                     /note="Eukaryotic cytochrome b(561), including the FRRS1
                     gene product; Region: Cyt_b561_FRRS1_like; cd08760"
                     /db_xref="CDD:176490"
     misc_feature    order(1231..1233,1351..1353,1447..1449,1555..1557)
                     /gene="FRRS1"
                     /note="putative heme binding sites [chemical binding];
                     other site"
                     /db_xref="CDD:176490"
ORIGIN      
        1 ttcagtttgg gaaacgttct cttttcttca tgggtaaact ggctccaccc agctgctgaa
       61 atgagatata agttgtaaca aaaccggaag ttggataggc tgcctttgct tctcgagatg
      121 gcagttcctg gatttaccct tggtgccttc atacttctgt tgctcgttag ttctgtggct
      181 aattatccca atggaaaagt aacgaagtcg tgccatggaa tgattcctga acatggtcat
      241 actccacagt ctgatccccc ttgctacatc tcagtgagtc agatgacatt caggccagga
      301 gagaagatca aagttacttt gtcagggcca ctatttaaag gctttctctt agaagcgcgt
      361 gatgagaatt tgactggccc tcctattggc tccttcacat tgattgacag tcaagtgtca
      421 cagcttctga cctgtgaaga tatacaggga tcagctgtga gtcacacaag tccatccaat
      481 aaagcagaaa ttgaagtcta ttggaatgct ccaagcagtg ccccaaacca cataaagttt
      541 ctagccacag ttgttgagaa gtacgatatc tactgggtga agattcctgg tcctgtaatt
      601 tcacaaccaa atgtccttcc ttttacaaca cctaaagcta caatagcacc tatgccaaca
      661 ttacctccag tctcccattt aacgaaatca ttcaatgctt cagattgtgg gaacaagaag
      721 ttctgtatta ggagtccttt gaactgtgac ccggagaaag agcttgcctg tgtcttcttg
      781 tccttcacac gagatgccaa gtcagtgatg gttgaaatga gcggtcccag taaaggctat
      841 ttatcctttg cattttctca cgaccaatgg atgggtgatg atgatgctta tctgtgtatt
      901 cttgaagatc agactgtgca catacaacct tcccatctga cagggcgaag tcaccctgta
      961 atggactcca gggatcctct tgaggatatg gcttggaggt tggcagatgg tgttatgcag
     1021 tgttctttca gaagaaacat tacctttcct ggggttaaga atagatttga tctaaatgca
     1081 agctactaca tatttctagc agatggtgca gctgatcatg gtcggattca taagcattct
     1141 cagcaacctt tgattacata tgacaaatac aatgtgacag gctatccaga gaacatagga
     1201 ggatcccatt ctttactcct tctgaaggtt catggtgcct taatgtttgt ggcatggatg
     1261 actacagtta gcgtaggtgt actgattgcc cggttcttca aacctgtttg gttaaaggct
     1321 ttatttggtg atgcagcttg gtttcaggta catcgaatgc tcatgcttac tacttctgcc
     1381 ctcactttca ttgcttttct tctgcctttt atttacagag gaggctggaa ttggcatgca
     1441 ggttatcacc cctaccttgg ttgtatagtg atgattttag cagttcttca gcttcttttg
     1501 gcagccttca gaccaccttt acatgaccca agaaggcaaa tgtttaagtg gactcactgg
     1561 agtatgggaa cagctgctag aataatagca gtggcaacaa tgttcctggg aatggattta
     1621 ccaggattga atcttcctgg gccatggaaa acctatgcaa tgattggatt tgtagcctgg
     1681 catgttggga cagagattgt tctggaggtg cacacttacc gactctctag aaaagatgaa
     1741 atattggatg atgatagaat tcagatcctc cagtcactta ctacagctga agcagaaggt
     1801 tatgctttta aaaaggcagt gttagcaatt tacgtctgtg ggaatttgac tcttctcact
     1861 atgttcttat ctgcaatcaa ccatctatga gtgagcgaag accttggctt ttgcagacca
     1921 ggtgataatt atcatcaagc caaaaaactt gatgcctgta tcgactggag cgtattcatg
     1981 acttctaatt aggaagacca ggccatgtct gtagagaaat tcagaagtct ggcctttaga
     2041 gatcaacatt cactagggtc ctatgggcta caaactgatg tcaagctttt acgtattatt
     2101 ctgagtctta aagggaagat tgtacttgag gagaaatgac tcaaatattt tttatgctga
     2161 agttttaaga atgttagcat ggaagaaaat aactgtttgg aaaaacataa aagatgtcat
     2221 aggataaaat gcagatagta ttaatgtaaa tatattttgg actataaagg tactgtggta
     2281 ctttaaagaa aacatttatt tttactagtt tatctgaatg gtcttttttt aggatttttg
     2341 tccccttgcc ccctttctta aaaatttttt ggaaacacgt ttttcggtcc agtgttttgg
     2401 acgtatcctt tgtttcatgt attttgttac ttccctggta aaggtgaaag tagggctaac
     2461 accatttcat taacatttaa atatattact aatattataa tttctttctt agcagtgaaa
     2521 tgcaagtgtg catcttctga ttaagagtgt ctttatatat tcagctacag agctaaaatg
     2581 gcattctata tgctaattgt tttgactctg aggttgtctt agcctttgga gattgtagac
     2641 ttgcatttca aaattaataa aattcactct tgtgaatata tttaagagtt attctttgtc
     2701 cttgtggtaa taaaataata tgggtggtac tgttttgtta gaagatcctg atgctataat
     2761 gaattagaat tatcaatgtt atttcccttc cggttccaat aatttctatt ttatgactgg
     2821 gtcttatgtt tgctatgagg acttctagcc agtgggtggc gccataatac tactgctttg
     2881 ttactgttca cttgtgctga ttcattttta gtacttagat agtatcttgg gatggcattt
     2941 ctcttaaaat tcaccaactc ttaatattta tttgaaaaat ttctgtcttt ttctcttttc
     3001 ctaacagata taggttacaa gctgaaatta gggaccaatg tttttatttt gtggtttcaa
     3061 ttctatttgt tttctaacca tgattgttta taaccgttgt ttgatacttc cctttacatt
     3121 cccatgacct tgtaacaaat gaacataact atcttaggca gaggaaacaa gcaaaactct
     3181 acattcttaa aataaaaagt ttagggaggc atattttact tttttatgtg ttctttctga
     3241 ttggtccaag gacctaaatt ctatatggca taaataatag cctcagcgat gtatcttaca
     3301 tctttcactg ggtaaaatga tatgtttttg ttctttatac aggtgtttat cataagtagc
     3361 ttagggtttg agatgtgaac tttctgtgtt tatgttctat aagtgccagg ctatttacag
     3421 tctaaacttt ccttttgaac gtctttattt aaaaacgttt tgtttagtat agaaagttaa
     3481 atgtatacta aaatattttc ctctaacttt caattattag gggcctaaag gttaataaaa
     3541 ttctcttaat aaattatatt atacatttga caaggaaaaa tttgtttaag gagaagatga
     3601 accttggtgg gttttgtttt caaattcgtg agcttgctgg atttccagtg ctgaggctaa
     3661 cctattttaa cttttctttt tcattgattc atctgttggc actattttga tatatcatca
     3721 attgatatac agagttgtcc aaagaagtct ttgtcatcta accttagtag accaacaaac
     3781 cttttcatta atatcaaatt atgattcttc tgcttatgaa tggttgacat ctacaaattg
     3841 aaaatgccta ttcgttgctc ctctcagttt tccttcttga ttttgtaata aacaatgttt
     3901 tttttt
//
LOCUS       XM_032609409            3811 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ferric chelate reductase 1 (FRRS1),
            transcript variant X3, mRNA.
ACCESSION   XM_032609409
VERSION     XM_032609409.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3811
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3811
                     /gene="FRRS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742153"
     CDS             23..1795
                     /gene="FRRS1"
                     /codon_start=1
                     /product="ferric-chelate reductase 1 isoform X2"
                     /protein_id="XP_032465300.1"
                     /db_xref="GeneID:116742153"
                     /translation="MAVPGFTLGAFILLLLVSSVANYPNGKVTKSCHGMIPEHGHTPQ
                     SDPPCYISVSQMTFRPGEKIKVTLSGPLFKGFLLEARDENLTGPPIGSFTLIDSQVSQ
                     LLTCEDIQGSAVSHTSPSNKAEIEVYWNAPSSAPNHIKFLATVVEKYDIYWVKIPGPV
                     ISQPNVLPFTTPKATIAPMPTLPPVSHLTKSFNASDCGNKKFCIRSPLNCDPEKELAC
                     VFLSFTRDAKSVMVEMSGPSKGYLSFAFSHDQWMGDDDAYLCILEDQTVHIQPSHLTG
                     RSHPVMDSRDPLEDMAWRLADGVMQCSFRRNITFPGVKNRFDLNASYYIFLADGAADH
                     GRIHKHSQQPLITYDKYNVTGYPENIGGSHSLLLLKVHGALMFVAWMTTVSVGVLIAR
                     FFKPVWLKALFGDAAWFQVHRMLMLTTSALTFIAFLLPFIYRGGWNWHAGYHPYLGCI
                     VMILAVLQLLLAAFRPPLHDPRRQMFKWTHWSMGTAARIIAVATMFLGMDLPGLNLPG
                     PWKTYAMIGFVAWHVGTEIVLEVHTYRLSRKDEILDDDRIQILQSLTTAEAEGYAFKK
                     AVLAIYVCGNLTLLTMFLSAINHL"
     misc_feature    116..484
                     /gene="FRRS1"
                     /note="Reeler domain; Region: Reeler; pfam02014"
                     /db_xref="CDD:460411"
     misc_feature    593..1081
                     /gene="FRRS1"
                     /note="DOMON domain of stromal cell-derived receptor 2
                     (ferric chelate reductase 1) and related proteins; Region:
                     DOMON_SDR_2_like; cd09628"
                     /db_xref="CDD:187686"
     misc_feature    order(743..745,749..754,776..778,791..799,1004..1006,
                     1010..1012,1031..1033,1040..1042)
                     /gene="FRRS1"
                     /note="putative heme binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187686"
     misc_feature    977..1615
                     /gene="FRRS1"
                     /note="Eukaryotic cytochrome b(561), including the FRRS1
                     gene product; Region: Cyt_b561_FRRS1_like; cd08760"
                     /db_xref="CDD:176490"
     misc_feature    order(1136..1138,1256..1258,1352..1354,1460..1462)
                     /gene="FRRS1"
                     /note="putative heme binding sites [chemical binding];
                     other site"
                     /db_xref="CDD:176490"
ORIGIN      
        1 ctgtgccacc agggaagccc aaatggcagt tcctggattt acccttggtg ccttcatact
       61 tctgttgctc gttagttctg tggctaatta tcccaatgga aaagtaacga agtcgtgcca
      121 tggaatgatt cctgaacatg gtcatactcc acagtctgat cccccttgct acatctcagt
      181 gagtcagatg acattcaggc caggagagaa gatcaaagtt actttgtcag ggccactatt
      241 taaaggcttt ctcttagaag cgcgtgatga gaatttgact ggccctccta ttggctcctt
      301 cacattgatt gacagtcaag tgtcacagct tctgacctgt gaagatatac agggatcagc
      361 tgtgagtcac acaagtccat ccaataaagc agaaattgaa gtctattgga atgctccaag
      421 cagtgcccca aaccacataa agtttctagc cacagttgtt gagaagtacg atatctactg
      481 ggtgaagatt cctggtcctg taatttcaca accaaatgtc cttcctttta caacacctaa
      541 agctacaata gcacctatgc caacattacc tccagtctcc catttaacga aatcattcaa
      601 tgcttcagat tgtgggaaca agaagttctg tattaggagt cctttgaact gtgacccgga
      661 gaaagagctt gcctgtgtct tcttgtcctt cacacgagat gccaagtcag tgatggttga
      721 aatgagcggt cccagtaaag gctatttatc ctttgcattt tctcacgacc aatggatggg
      781 tgatgatgat gcttatctgt gtattcttga agatcagact gtgcacatac aaccttccca
      841 tctgacaggg cgaagtcacc ctgtaatgga ctccagggat cctcttgagg atatggcttg
      901 gaggttggca gatggtgtta tgcagtgttc tttcagaaga aacattacct ttcctggggt
      961 taagaataga tttgatctaa atgcaagcta ctacatattt ctagcagatg gtgcagctga
     1021 tcatggtcgg attcataagc attctcagca acctttgatt acatatgaca aatacaatgt
     1081 gacaggctat ccagagaaca taggaggatc ccattcttta ctccttctga aggttcatgg
     1141 tgccttaatg tttgtggcat ggatgactac agttagcgta ggtgtactga ttgcccggtt
     1201 cttcaaacct gtttggttaa aggctttatt tggtgatgca gcttggtttc aggtacatcg
     1261 aatgctcatg cttactactt ctgccctcac tttcattgct tttcttctgc cttttattta
     1321 cagaggaggc tggaattggc atgcaggtta tcacccctac cttggttgta tagtgatgat
     1381 tttagcagtt cttcagcttc ttttggcagc cttcagacca cctttacatg acccaagaag
     1441 gcaaatgttt aagtggactc actggagtat gggaacagct gctagaataa tagcagtggc
     1501 aacaatgttc ctgggaatgg atttaccagg attgaatctt cctgggccat ggaaaaccta
     1561 tgcaatgatt ggatttgtag cctggcatgt tgggacagag attgttctgg aggtgcacac
     1621 ttaccgactc tctagaaaag atgaaatatt ggatgatgat agaattcaga tcctccagtc
     1681 acttactaca gctgaagcag aaggttatgc ttttaaaaag gcagtgttag caatttacgt
     1741 ctgtgggaat ttgactcttc tcactatgtt cttatctgca atcaaccatc tatgagtgag
     1801 cgaagacctt ggcttttgca gaccaggtga taattatcat caagccaaaa aacttgatgc
     1861 ctgtatcgac tggagcgtat tcatgacttc taattaggaa gaccaggcca tgtctgtaga
     1921 gaaattcaga agtctggcct ttagagatca acattcacta gggtcctatg ggctacaaac
     1981 tgatgtcaag cttttacgta ttattctgag tcttaaaggg aagattgtac ttgaggagaa
     2041 atgactcaaa tattttttat gctgaagttt taagaatgtt agcatggaag aaaataactg
     2101 tttggaaaaa cataaaagat gtcataggat aaaatgcaga tagtattaat gtaaatatat
     2161 tttggactat aaaggtactg tggtacttta aagaaaacat ttatttttac tagtttatct
     2221 gaatggtctt tttttaggat ttttgtcccc ttgccccctt tcttaaaaat tttttggaaa
     2281 cacgtttttc ggtccagtgt tttggacgta tcctttgttt catgtatttt gttacttccc
     2341 tggtaaaggt gaaagtaggg ctaacaccat ttcattaaca tttaaatata ttactaatat
     2401 tataatttct ttcttagcag tgaaatgcaa gtgtgcatct tctgattaag agtgtcttta
     2461 tatattcagc tacagagcta aaatggcatt ctatatgcta attgttttga ctctgaggtt
     2521 gtcttagcct ttggagattg tagacttgca tttcaaaatt aataaaattc actcttgtga
     2581 atatatttaa gagttattct ttgtccttgt ggtaataaaa taatatgggt ggtactgttt
     2641 tgttagaaga tcctgatgct ataatgaatt agaattatca atgttatttc ccttccggtt
     2701 ccaataattt ctattttatg actgggtctt atgtttgcta tgaggacttc tagccagtgg
     2761 gtggcgccat aatactactg ctttgttact gttcacttgt gctgattcat ttttagtact
     2821 tagatagtat cttgggatgg catttctctt aaaattcacc aactcttaat atttatttga
     2881 aaaatttctg tctttttctc ttttcctaac agatataggt tacaagctga aattagggac
     2941 caatgttttt attttgtggt ttcaattcta tttgttttct aaccatgatt gtttataacc
     3001 gttgtttgat acttcccttt acattcccat gaccttgtaa caaatgaaca taactatctt
     3061 aggcagagga aacaagcaaa actctacatt cttaaaataa aaagtttagg gaggcatatt
     3121 ttactttttt atgtgttctt tctgattggt ccaaggacct aaattctata tggcataaat
     3181 aatagcctca gcgatgtatc ttacatcttt cactgggtaa aatgatatgt ttttgttctt
     3241 tatacaggtg tttatcataa gtagcttagg gtttgagatg tgaactttct gtgtttatgt
     3301 tctataagtg ccaggctatt tacagtctaa actttccttt tgaacgtctt tatttaaaaa
     3361 cgttttgttt agtatagaaa gttaaatgta tactaaaata ttttcctcta actttcaatt
     3421 attaggggcc taaaggttaa taaaattctc ttaataaatt atattataca tttgacaagg
     3481 aaaaatttgt ttaaggagaa gatgaacctt ggtgggtttt gttttcaaat tcgtgagctt
     3541 gctggatttc cagtgctgag gctaacctat tttaactttt ctttttcatt gattcatctg
     3601 ttggcactat tttgatatat catcaattga tatacagagt tgtccaaaga agtctttgtc
     3661 atctaacctt agtagaccaa caaacctttt cattaatatc aaattatgat tcttctgctt
     3721 atgaatggtt gacatctaca aattgaaaat gcctattcgt tgctcctctc agttttcctt
     3781 cttgattttg taataaacaa tgtttttttt t
//
LOCUS       XM_032609418            1709 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ferric chelate reductase 1 (FRRS1),
            transcript variant X4, mRNA.
ACCESSION   XM_032609418
VERSION     XM_032609418.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1709
                     /gene="FRRS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742153"
     CDS             12..1577
                     /gene="FRRS1"
                     /codon_start=1
                     /product="ferric-chelate reductase 1 isoform X3"
                     /protein_id="XP_032465309.1"
                     /db_xref="GeneID:116742153"
                     /translation="MDGIMEVPVRRQNMGRKKSEMAVPGFTLGAFILLLLVSSVANYP
                     NGKVTKSCHGMIPEHGHTPQSDPPCYISVSQMTFRPGEKIKVTLSGPLFKGFLLEARD
                     ENLTGPPIGSFTLIDSQVSQLLTCEDIQGSAVSHTSPSNKAEIEVYWNAPSSAPNHIK
                     FLATVVEKYDIYWVKIPGPVISQPNVLPFTTPKATIAPMPTLPPVSHLTKSFNASDCG
                     NKKFCIRSPLNCDPEKELACVFLSFTRDAKSVMVEMSGPSKGYLSFAFSHDQWMGDDD
                     AYLCILEDQTVHIQPSHLTGRSHPVMDSRDPLEDMAWRLADGVMQCSFRRNITFPGVK
                     NRFDLNASYYIFLADGAADHGRIHKHSQQPLITYDKYNVTGYPENIGGSHSLLLLKVH
                     GALMFVAWMTTVSVGVLIARFFKPVWLKALFGDAAWFQVHRMLMLTTSALTFIAFLLP
                     FIYRGGWNWHAGYHPYLGCIVMILAVLQLLLAAFRPPLHDPRRQMFKWTHWSMGTAAR
                     IIADALVIGVICC"
     misc_feature    165..533
                     /gene="FRRS1"
                     /note="Reeler domain; Region: Reeler; pfam02014"
                     /db_xref="CDD:460411"
     misc_feature    642..1130
                     /gene="FRRS1"
                     /note="DOMON domain of stromal cell-derived receptor 2
                     (ferric chelate reductase 1) and related proteins; Region:
                     DOMON_SDR_2_like; cd09628"
                     /db_xref="CDD:187686"
     misc_feature    order(792..794,798..803,825..827,840..848,1053..1055,
                     1059..1061,1080..1082,1089..1091)
                     /gene="FRRS1"
                     /note="putative heme binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187686"
     misc_feature    1026..>1544
                     /gene="FRRS1"
                     /note="Eukaryotic cytochrome b(561), including the FRRS1
                     gene product; Region: Cyt_b561_FRRS1_like; cd08760"
                     /db_xref="CDD:176490"
     misc_feature    order(1185..1187,1305..1307,1401..1403,1509..1511)
                     /gene="FRRS1"
                     /note="putative heme binding sites [chemical binding];
                     other site"
                     /db_xref="CDD:176490"
ORIGIN      
        1 gtaggaattt gatggatggc ataatggagg tcccagttag aagacagaac atggggagga
       61 aaaaaagtga gatggcagtt cctggattta cccttggtgc cttcatactt ctgttgctcg
      121 ttagttctgt ggctaattat cccaatggaa aagtaacgaa gtcgtgccat ggaatgattc
      181 ctgaacatgg tcatactcca cagtctgatc ccccttgcta catctcagtg agtcagatga
      241 cattcaggcc aggagagaag atcaaagtta ctttgtcagg gccactattt aaaggctttc
      301 tcttagaagc gcgtgatgag aatttgactg gccctcctat tggctccttc acattgattg
      361 acagtcaagt gtcacagctt ctgacctgtg aagatataca gggatcagct gtgagtcaca
      421 caagtccatc caataaagca gaaattgaag tctattggaa tgctccaagc agtgccccaa
      481 accacataaa gtttctagcc acagttgttg agaagtacga tatctactgg gtgaagattc
      541 ctggtcctgt aatttcacaa ccaaatgtcc ttccttttac aacacctaaa gctacaatag
      601 cacctatgcc aacattacct ccagtctccc atttaacgaa atcattcaat gcttcagatt
      661 gtgggaacaa gaagttctgt attaggagtc ctttgaactg tgacccggag aaagagcttg
      721 cctgtgtctt cttgtccttc acacgagatg ccaagtcagt gatggttgaa atgagcggtc
      781 ccagtaaagg ctatttatcc tttgcatttt ctcacgacca atggatgggt gatgatgatg
      841 cttatctgtg tattcttgaa gatcagactg tgcacataca accttcccat ctgacagggc
      901 gaagtcaccc tgtaatggac tccagggatc ctcttgagga tatggcttgg aggttggcag
      961 atggtgttat gcagtgttct ttcagaagaa acattacctt tcctggggtt aagaatagat
     1021 ttgatctaaa tgcaagctac tacatatttc tagcagatgg tgcagctgat catggtcgga
     1081 ttcataagca ttctcagcaa cctttgatta catatgacaa atacaatgtg acaggctatc
     1141 cagagaacat aggaggatcc cattctttac tccttctgaa ggttcatggt gccttaatgt
     1201 ttgtggcatg gatgactaca gttagcgtag gtgtactgat tgcccggttc ttcaaacctg
     1261 tttggttaaa ggctttattt ggtgatgcag cttggtttca ggtacatcga atgctcatgc
     1321 ttactacttc tgccctcact ttcattgctt ttcttctgcc ttttatttac agaggaggct
     1381 ggaattggca tgcaggttat cacccctacc ttggttgtat agtgatgatt ttagcagttc
     1441 ttcagcttct tttggcagcc ttcagaccac ctttacatga cccaagaagg caaatgttta
     1501 agtggactca ctggagtatg ggaacagctg ctagaataat agcagatgca ttagtaattg
     1561 gagtaatttg ctgttgagga gaaatcagtc aaacgttgaa atccagaaag taatttctag
     1621 agtggcaaca atgttcctgg gaatggattt accaggattg aatcttcctg ggccatggaa
     1681 aacctatgca atgattggat ttgtagcct
//
LOCUS       XM_032609430            5369 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus VANGL planar cell polarity protein 2
            (VANGL2), transcript variant X1, mRNA.
ACCESSION   XM_032609430
VERSION     XM_032609430.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5369
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5369
                     /gene="VANGL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742168"
     CDS             455..2020
                     /gene="VANGL2"
                     /codon_start=1
                     /product="vang-like protein 2"
                     /protein_id="XP_032465321.1"
                     /db_xref="GeneID:116742168"
                     /translation="MDTESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSV
                     TIQAPGEPLLDNESTRGDERDDNWGETTTVVTGTSEHSISHDDLTRIAKDMEDSVPLD
                     CSRHLGVAAGATLALLSFLTPLAFLLLPPLLWREELEPCGTACEGLFISVAFKLLILL
                     LGSWALFFRRPKASLPRVFVLRALLMVLVFLLVVSYWLFYGVRILDARERSYQGVVQF
                     AVSLVDALLFVHYLAVVLLELRQLQPQFTLKVVRSTDGASRFYNVGHLSIQRVAVWIL
                     EKYYHDFPVYNPALLNLPKSVLAKKVSGFKVYSLGEENSTNNSTGQSRAVIAAAARRR
                     DNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQEEEQKNPREVMDPREAAQ
                     AIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLASGPTIQY
                     HKERWLAKQWTLVSEEPVTNGLKDGIVFLLKRQDFSLVVSTKKVPFFKLSEEFVDPKS
                     HKFVMRLQSETSV"
     misc_feature    554..2017
                     /gene="VANGL2"
                     /note="Strabismus protein; Region: Strabismus; pfam06638"
                     /db_xref="CDD:461971"
ORIGIN      
        1 tccttgatcc ttggtcccgc catgggagcc taagcgcccc gcattccccc cggccccctg
       61 cccctggggc cctgaggggg aagagactgc gatctgggac ggagaggggg cgaccagact
      121 caggagcccc cctctacacc cccacatcgt ccgcgctgcc cgtccgggag cgcggagttc
      181 gtagcgaccc ggaacgctgc ggatacaaag gcgccggacc gagtggggcg ccggcggagc
      241 ccacccggca gttcgcagcg gctggagggc cgcttgattt tctctgagac cagcccaccc
      301 gtccagcaaa atagagtccc tcagggtgac ggttgatttt ctaaaggtgc cccttggcct
      361 gaagaagtcg gtgctaaagg aggtggcagt ggggcccccc aaaaggcccc agcctgtggc
      421 cctggagcgc tacaaggcgc ggcgttcaga cgccatggac accgagtccc agtactcagg
      481 gtattcctac aagtcgggcc actcccgcag ctcccgcaag cacagggacc gtcgggaccg
      541 acaccgctct aagagccgag acgggagccg tggggacaag tcggtgacga tccaggctcc
      601 aggggagccc ctgctggaca atgagtccac gagaggggat gagcgggacg acaactgggg
      661 ggagacgacc acagtagtaa cgggcacctc ggagcacagc atctcccatg atgacctcac
      721 acgcatcgcc aaggacatgg aggacagcgt cccgctggac tgctcccggc acctgggcgt
      781 ggcggcgggg gccacgctgg ccctgctgtc tttcctcacg ccgctggctt tcctgctgct
      841 gcccccactg ctgtggcggg aggagctgga gccgtgcggg acggcctgcg agggcctctt
      901 catctccgtg gccttcaagc tgctcatcct gctgttgggc agctgggccc tgttcttccg
      961 ccggcccaag gcctctctgc cccgtgtctt cgtgctgcgt gccctgctca tggtactcgt
     1021 cttcctgctt gtcgtctcct actggctctt ctacggcgtg cgcatcctgg acgcccgcga
     1081 gcgtagctac cagggcgtgg tgcagtttgc tgtgtcgctg gtagatgccc tgctcttcgt
     1141 gcactacctg gccgtggtcc tcctggagct gcgccagctc cagcctcagt tcacgctcaa
     1201 ggtcgtgcgc tccaccgacg gggccagccg gttctacaac gtgggccatc tcagcatcca
     1261 gcgcgtggca gtgtggatcc tggagaagta ttaccatgac ttccctgtct acaaccctgc
     1321 cctcctcaac ctgcccaagt ccgtcctggc caagaaagtg tctggcttca aggtgtattc
     1381 cctcggagag gaaaacagca ccaacaactc cacgggccag tcccgggctg tgattgcagc
     1441 agcggcccgg aggcgggaca acagccacaa cgagtactac tacgaggagg ccgagcacga
     1501 gcggagggtg cgcaagagga gggccaggct tgtggtggcc gtggaggagg ccttcactca
     1561 cattaagcgg ctgcaggagg aggagcagaa gaaccccagg gaggtgatgg acccacggga
     1621 ggcagcccag gccatcttcg catccatggc ccgtgccatg cagaagtacc ttcgcaccac
     1681 caagcagcag ccttaccaca ccatggagag catcctgcag caccttgagt tctgcatcac
     1741 tcacgacatg acacccaagg ccttcctgga gcggtacctg gcgtctggac ccaccatcca
     1801 gtaccacaag gaacgctggc tggccaaaca gtggacactg gtgagcgagg agccagtgac
     1861 caacgggctc aaggatggca tcgttttcct cttgaaacgc caggacttca gcctggtggt
     1921 cagcaccaag aaggtcccat tcttcaaact ctccgaggaa tttgtggacc ccaagtcgca
     1981 caagtttgtc atgaggctgc agtctgagac ctcggtgtga ctgtgcaaca gcagggggag
     2041 tgggagacgc ggggggctcc tgagggtggt gggggcgtgg ccctcaggcc ctgccacgtt
     2101 cctgccacct tcttcctctt gctctagttt tttttttcta cttgaattaa ccaccccccc
     2161 cccacctgtc tcctcccctc ttccttattt accctatgtg aacctggaga gaccatcctt
     2221 ctgtcaacag tacctgggaa attccctctc cttctcccac ccccctcact tttgtatcac
     2281 tcccggccct gcaggaacca gtgcctctct ccctctcctt tccccgggtg acagtctctt
     2341 ctgaaagggc acagggccca cccgagcccc actctcgaac ccaggttctt ataagcagtt
     2401 ctatccagcg gcccccaaaa gggtttctct ggggggctcc gatctgactc cagagagcca
     2461 cggtgccaaa ctcctgagca gcactacctg cggcctcctg gcggcaggtg gatctgctcc
     2521 ccctgcccgc tcaccccaag ctggagttct tgggcaagga tcctcctaca cagccccaga
     2581 gtccggggcc tccctgccag ggttatttgc ttccagctgt ttgagcctct gtcccccatc
     2641 cacacatatt cagagcaagg gaagatccca tcctttaccc tgacatgtct accttccatt
     2701 tctgatttgt gtggtcacgt gtgaccacag gcaaactgag atggaacccc tctgtgacca
     2761 cttttcctgg gccctggggg acagacagta cctttcttcc aaggggtctt tcctgtgcag
     2821 cccctggggg aaggtcagga gagagccccg tgaacatcgc tgacccctac cctctgaact
     2881 tccttcacct ctgttcccac catggtggga tgggtctccc ccttcccagt gaaggatgcc
     2941 acgtagactc ctatacagaa ttagtggctt gcagaccctg acccaccctg gtgatctcag
     3001 ccaaatgttt ttctttcctt caccagccat ccccagtctt gctgtctctt ctctcagctc
     3061 cagagacctg ttgcctcatc tcttttttgg ggggagccag cagcccctcc ttatcccctg
     3121 ccttaagtcc acttctttgc ctcaggggtc tcttttcctt ggccggccag ggtccccccc
     3181 tgttccctca ctgcctggtt ttctgggctc tggtctccct ctgtattggg gtgagggacc
     3241 aagattgctg cccttgatgg gtacttagcc cctcacccca tttagcttcc ggagtctttg
     3301 cacccaatct gaattcttga gcaaaatttg ctggccttct aatacttact ttcactgtaa
     3361 atctgagcct ttaaatcaga cacccttaaa ttatgtagtt ttagccaagg ggaatagaac
     3421 taagaagtac tcacatacct ccagccagca cacatgttgg ggagcattct ggtgactggg
     3481 ctggagcagt cccctgggcc agtcctcaga gtaactcaca atgccccctt ataagcccgt
     3541 ctttcccctg gaaaacccat tggttcttgc cttgtagagt gcaccctggg ataagatcac
     3601 agttgatctc ttaccaggga gtcttcttct ctgtgtagtg gcagccctgg gcatgatgga
     3661 gcctggggat tgtctctcct gctgtccttt ctgaaaaagc acatctttcc gcacaccact
     3721 tactagagaa gggttcttcg gccagtgctt accttgtctg cacttgggtg gattatgggg
     3781 ctgacctagg cagcgcctgg aggtcagcct tgggctgggg ctgtgggttt ggggataagc
     3841 ctgagtgaga tacatcctgt cctgggggtc ctgggaaggt attttttcct tctcttcaaa
     3901 gacctggttt cagaggagtc ccttcttggt cacatttcta aatacctcac tatcctggaa
     3961 aatggggcct ggatggtgat tggggtcact gcctttgtgg gcaggagtgg gatgtggtgt
     4021 ggtttgagga ggagttgggg tggggagagg gcaagtattt gggatcagag tcgctgccct
     4081 aggttagggg ccggggaatg tttattttaa gaacctgcca tgtttttaat cactgtgatt
     4141 tttttcattc ccttttccta aaacaaaaag acattttttc ccccccgact ctctctctaa
     4201 gcactaaggg ctgtgactga gaatggtagt gttttggtcc tttgcgtcag aactgtggta
     4261 tctttgtgtt ctttgattat tgttattatt attttttgaa atgtcaggat gacttgtcaa
     4321 gtgtatggct gtgtttgtct tttgcttctc ctatatggga aattgtcttc atgctgtgaa
     4381 ctgctgtggg gtgtgcagct gactcagtcc ctctgagcag tgtcccccac tttgcctgtc
     4441 ccaacacatg ctggatttgc tcattcttcc cccgtggggg tgctgcccac ccattaccac
     4501 ccgtgccccg tatgccacca tcagggatgc tgtggctggg tctctccagt gctctttcct
     4561 atgactacat ggcatcctag ctcatcccca ccacacctcc cagaccttcc tttacaccac
     4621 cttggaaggc tggtcctcct tccctccaca ccaggatact gtgcctcagt ccttcaccta
     4681 cctcgccact ctgccgccgt cccgattcgt ccctttctct taaactactc ttcattctct
     4741 ctctttctat tcttgtttat ttcccttcag cttctccttt tttcttccca cccccctcca
     4801 tttcagccct tatcttttca cttccccatc cccacctcag tcctgttgca aaccctgaca
     4861 caataactgt cacgagacat tgggatcctt tcttatctga aacgttgttt cccagagttt
     4921 gtgcttctct cctcctctgt tgggcccgga tgagctccct tgcccctctg tggtgtctgt
     4981 cagtctgtct tctttttcct ctgccctccc catggggcag catctgctga tggattcggt
     5041 cctggtgtgt gattgttgtg atttgttctt ctgtgtgtga aaggaagagg aatttttgag
     5101 ttccttccca gtgagattgt atatgtagaa ttttccactg ttggatctag attttttttt
     5161 tccttttttt gggttacaga gctgagacct tgtgcatgca tgtagaaaat tgtaaaatgt
     5221 aaattctttt ttttaatata taaaaagctt gtttttacag tttgcagtgg gtctaaacat
     5281 tatgacaatt ttagggattt tttttcttaa acataggaac taaaactgta caaatttttt
     5341 taatataaaa taaagacatt tgacttttg
//
LOCUS       XM_032609440            5179 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus VANGL planar cell polarity protein 2
            (VANGL2), transcript variant X2, mRNA.
ACCESSION   XM_032609440
VERSION     XM_032609440.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5179
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5179
                     /gene="VANGL2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742168"
     CDS             265..1830
                     /gene="VANGL2"
                     /codon_start=1
                     /product="vang-like protein 2"
                     /protein_id="XP_032465331.1"
                     /db_xref="GeneID:116742168"
                     /translation="MDTESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSV
                     TIQAPGEPLLDNESTRGDERDDNWGETTTVVTGTSEHSISHDDLTRIAKDMEDSVPLD
                     CSRHLGVAAGATLALLSFLTPLAFLLLPPLLWREELEPCGTACEGLFISVAFKLLILL
                     LGSWALFFRRPKASLPRVFVLRALLMVLVFLLVVSYWLFYGVRILDARERSYQGVVQF
                     AVSLVDALLFVHYLAVVLLELRQLQPQFTLKVVRSTDGASRFYNVGHLSIQRVAVWIL
                     EKYYHDFPVYNPALLNLPKSVLAKKVSGFKVYSLGEENSTNNSTGQSRAVIAAAARRR
                     DNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQEEEQKNPREVMDPREAAQ
                     AIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLASGPTIQY
                     HKERWLAKQWTLVSEEPVTNGLKDGIVFLLKRQDFSLVVSTKKVPFFKLSEEFVDPKS
                     HKFVMRLQSETSV"
     misc_feature    364..1827
                     /gene="VANGL2"
                     /note="Strabismus protein; Region: Strabismus; pfam06638"
                     /db_xref="CDD:461971"
ORIGIN      
        1 ccgtcttcct gttttactgg gcattgactt cccctctctc tgaattgacc tgaaatttct
       61 ctcacgctct ccaggagggc cgcttgattt tctctgagac cagcccaccc gtccagcaaa
      121 atagagtccc tcagggtgac ggttgatttt ctaaaggtgc cccttggcct gaagaagtcg
      181 gtgctaaagg aggtggcagt ggggcccccc aaaaggcccc agcctgtggc cctggagcgc
      241 tacaaggcgc ggcgttcaga cgccatggac accgagtccc agtactcagg gtattcctac
      301 aagtcgggcc actcccgcag ctcccgcaag cacagggacc gtcgggaccg acaccgctct
      361 aagagccgag acgggagccg tggggacaag tcggtgacga tccaggctcc aggggagccc
      421 ctgctggaca atgagtccac gagaggggat gagcgggacg acaactgggg ggagacgacc
      481 acagtagtaa cgggcacctc ggagcacagc atctcccatg atgacctcac acgcatcgcc
      541 aaggacatgg aggacagcgt cccgctggac tgctcccggc acctgggcgt ggcggcgggg
      601 gccacgctgg ccctgctgtc tttcctcacg ccgctggctt tcctgctgct gcccccactg
      661 ctgtggcggg aggagctgga gccgtgcggg acggcctgcg agggcctctt catctccgtg
      721 gccttcaagc tgctcatcct gctgttgggc agctgggccc tgttcttccg ccggcccaag
      781 gcctctctgc cccgtgtctt cgtgctgcgt gccctgctca tggtactcgt cttcctgctt
      841 gtcgtctcct actggctctt ctacggcgtg cgcatcctgg acgcccgcga gcgtagctac
      901 cagggcgtgg tgcagtttgc tgtgtcgctg gtagatgccc tgctcttcgt gcactacctg
      961 gccgtggtcc tcctggagct gcgccagctc cagcctcagt tcacgctcaa ggtcgtgcgc
     1021 tccaccgacg gggccagccg gttctacaac gtgggccatc tcagcatcca gcgcgtggca
     1081 gtgtggatcc tggagaagta ttaccatgac ttccctgtct acaaccctgc cctcctcaac
     1141 ctgcccaagt ccgtcctggc caagaaagtg tctggcttca aggtgtattc cctcggagag
     1201 gaaaacagca ccaacaactc cacgggccag tcccgggctg tgattgcagc agcggcccgg
     1261 aggcgggaca acagccacaa cgagtactac tacgaggagg ccgagcacga gcggagggtg
     1321 cgcaagagga gggccaggct tgtggtggcc gtggaggagg ccttcactca cattaagcgg
     1381 ctgcaggagg aggagcagaa gaaccccagg gaggtgatgg acccacggga ggcagcccag
     1441 gccatcttcg catccatggc ccgtgccatg cagaagtacc ttcgcaccac caagcagcag
     1501 ccttaccaca ccatggagag catcctgcag caccttgagt tctgcatcac tcacgacatg
     1561 acacccaagg ccttcctgga gcggtacctg gcgtctggac ccaccatcca gtaccacaag
     1621 gaacgctggc tggccaaaca gtggacactg gtgagcgagg agccagtgac caacgggctc
     1681 aaggatggca tcgttttcct cttgaaacgc caggacttca gcctggtggt cagcaccaag
     1741 aaggtcccat tcttcaaact ctccgaggaa tttgtggacc ccaagtcgca caagtttgtc
     1801 atgaggctgc agtctgagac ctcggtgtga ctgtgcaaca gcagggggag tgggagacgc
     1861 ggggggctcc tgagggtggt gggggcgtgg ccctcaggcc ctgccacgtt cctgccacct
     1921 tcttcctctt gctctagttt tttttttcta cttgaattaa ccaccccccc cccacctgtc
     1981 tcctcccctc ttccttattt accctatgtg aacctggaga gaccatcctt ctgtcaacag
     2041 tacctgggaa attccctctc cttctcccac ccccctcact tttgtatcac tcccggccct
     2101 gcaggaacca gtgcctctct ccctctcctt tccccgggtg acagtctctt ctgaaagggc
     2161 acagggccca cccgagcccc actctcgaac ccaggttctt ataagcagtt ctatccagcg
     2221 gcccccaaaa gggtttctct ggggggctcc gatctgactc cagagagcca cggtgccaaa
     2281 ctcctgagca gcactacctg cggcctcctg gcggcaggtg gatctgctcc ccctgcccgc
     2341 tcaccccaag ctggagttct tgggcaagga tcctcctaca cagccccaga gtccggggcc
     2401 tccctgccag ggttatttgc ttccagctgt ttgagcctct gtcccccatc cacacatatt
     2461 cagagcaagg gaagatccca tcctttaccc tgacatgtct accttccatt tctgatttgt
     2521 gtggtcacgt gtgaccacag gcaaactgag atggaacccc tctgtgacca cttttcctgg
     2581 gccctggggg acagacagta cctttcttcc aaggggtctt tcctgtgcag cccctggggg
     2641 aaggtcagga gagagccccg tgaacatcgc tgacccctac cctctgaact tccttcacct
     2701 ctgttcccac catggtggga tgggtctccc ccttcccagt gaaggatgcc acgtagactc
     2761 ctatacagaa ttagtggctt gcagaccctg acccaccctg gtgatctcag ccaaatgttt
     2821 ttctttcctt caccagccat ccccagtctt gctgtctctt ctctcagctc cagagacctg
     2881 ttgcctcatc tcttttttgg ggggagccag cagcccctcc ttatcccctg ccttaagtcc
     2941 acttctttgc ctcaggggtc tcttttcctt ggccggccag ggtccccccc tgttccctca
     3001 ctgcctggtt ttctgggctc tggtctccct ctgtattggg gtgagggacc aagattgctg
     3061 cccttgatgg gtacttagcc cctcacccca tttagcttcc ggagtctttg cacccaatct
     3121 gaattcttga gcaaaatttg ctggccttct aatacttact ttcactgtaa atctgagcct
     3181 ttaaatcaga cacccttaaa ttatgtagtt ttagccaagg ggaatagaac taagaagtac
     3241 tcacatacct ccagccagca cacatgttgg ggagcattct ggtgactggg ctggagcagt
     3301 cccctgggcc agtcctcaga gtaactcaca atgccccctt ataagcccgt ctttcccctg
     3361 gaaaacccat tggttcttgc cttgtagagt gcaccctggg ataagatcac agttgatctc
     3421 ttaccaggga gtcttcttct ctgtgtagtg gcagccctgg gcatgatgga gcctggggat
     3481 tgtctctcct gctgtccttt ctgaaaaagc acatctttcc gcacaccact tactagagaa
     3541 gggttcttcg gccagtgctt accttgtctg cacttgggtg gattatgggg ctgacctagg
     3601 cagcgcctgg aggtcagcct tgggctgggg ctgtgggttt ggggataagc ctgagtgaga
     3661 tacatcctgt cctgggggtc ctgggaaggt attttttcct tctcttcaaa gacctggttt
     3721 cagaggagtc ccttcttggt cacatttcta aatacctcac tatcctggaa aatggggcct
     3781 ggatggtgat tggggtcact gcctttgtgg gcaggagtgg gatgtggtgt ggtttgagga
     3841 ggagttgggg tggggagagg gcaagtattt gggatcagag tcgctgccct aggttagggg
     3901 ccggggaatg tttattttaa gaacctgcca tgtttttaat cactgtgatt tttttcattc
     3961 ccttttccta aaacaaaaag acattttttc ccccccgact ctctctctaa gcactaaggg
     4021 ctgtgactga gaatggtagt gttttggtcc tttgcgtcag aactgtggta tctttgtgtt
     4081 ctttgattat tgttattatt attttttgaa atgtcaggat gacttgtcaa gtgtatggct
     4141 gtgtttgtct tttgcttctc ctatatggga aattgtcttc atgctgtgaa ctgctgtggg
     4201 gtgtgcagct gactcagtcc ctctgagcag tgtcccccac tttgcctgtc ccaacacatg
     4261 ctggatttgc tcattcttcc cccgtggggg tgctgcccac ccattaccac ccgtgccccg
     4321 tatgccacca tcagggatgc tgtggctggg tctctccagt gctctttcct atgactacat
     4381 ggcatcctag ctcatcccca ccacacctcc cagaccttcc tttacaccac cttggaaggc
     4441 tggtcctcct tccctccaca ccaggatact gtgcctcagt ccttcaccta cctcgccact
     4501 ctgccgccgt cccgattcgt ccctttctct taaactactc ttcattctct ctctttctat
     4561 tcttgtttat ttcccttcag cttctccttt tttcttccca cccccctcca tttcagccct
     4621 tatcttttca cttccccatc cccacctcag tcctgttgca aaccctgaca caataactgt
     4681 cacgagacat tgggatcctt tcttatctga aacgttgttt cccagagttt gtgcttctct
     4741 cctcctctgt tgggcccgga tgagctccct tgcccctctg tggtgtctgt cagtctgtct
     4801 tctttttcct ctgccctccc catggggcag catctgctga tggattcggt cctggtgtgt
     4861 gattgttgtg atttgttctt ctgtgtgtga aaggaagagg aatttttgag ttccttccca
     4921 gtgagattgt atatgtagaa ttttccactg ttggatctag attttttttt tccttttttt
     4981 gggttacaga gctgagacct tgtgcatgca tgtagaaaat tgtaaaatgt aaattctttt
     5041 ttttaatata taaaaagctt gtttttacag tttgcagtgg gtctaaacat tatgacaatt
     5101 ttagggattt tttttcttaa acataggaac taaaactgta caaatttttt taatataaaa
     5161 taaagacatt tgacttttg
//
LOCUS       XM_032609455            2190 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immediate early response 5 (IER5), mRNA.
ACCESSION   XM_032609455
VERSION     XM_032609455.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2190
                     /gene="IER5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116742175"
     CDS             244..1224
                     /gene="IER5"
                     /codon_start=1
                     /product="immediate early response gene 5 protein"
                     /protein_id="XP_032465346.1"
                     /db_xref="GeneID:116742175"
                     /translation="MEFKLEAHRIVSISLGKIYNSRAQRGGIKLHKNLLVSLVLRSAR
                     QVYLSDPCPGLYLAGHPGAPALPQQPGESVAGPPACWGEPPPPAACAAWPEPEPQLEL
                     PAVLEVPRAGDAEPAAPVTGAGDTLQGGEAEAAEAAWCRVEGPRETAVGGAGVPAGGS
                     DVFPQGPGAARRPWGCPPGDEDKTSASPRVDGSRAPSPAGPEPPVPPPVCPRKRGAEG
                     VGGGPADRPAPGSTPLKKPRRNSEEQSGGAAAAAAAQEEEEMETGNVANLISIFGSSF
                     SGLLRKSPGGGREEAEGEESGPEAAEPGQICCDKPVLRDINPWSTAIVAF"
     misc_feature    244..1221
                     /gene="IER5"
                     /note="Immediate early response protein (IER); Region:
                     IER; pfam05760"
                     /db_xref="CDD:461732"
ORIGIN      
        1 cgcccggagg ccggactgcc ctcagttagc gacccgaccc caacctggct gccaagctaa
       61 ggtggggagg gcgcaagagc ctgcgagcgc gtcgccggag ccgtttctat tcggagtttt
      121 cagagattca ggttccaccc ccggggcgga ctcgttgacg cctatcgttc ccgtctcagc
      181 ttcggaaggt gggtcggggc tcactccctc acctccgcgc cagccctggg aaggcgaggc
      241 aggatggagt tcaaactgga ggctcaccgc atcgtcagca tctctctggg caagatctac
      301 aactcgcggg cccagcgcgg cggtatcaag ctgcacaaga acctcctggt ctcgttggtg
      361 ctccgcagcg cccgccaggt ctacctgagc gacccgtgcc ccggactcta cctggccggt
      421 cacccggggg ccccggcgct gccgcagcag cctggggagt cggtggccgg gccacccgcg
      481 tgctgggggg agccacctcc gccggccgcc tgtgccgcct ggccggagcc cgaaccccag
      541 ctggagctcc ctgccgtcct agaagtgcca cgggcgggtg acgcggagcc cgcagccccg
      601 gtgacgggcg ccggggacac tcttcagggc ggagaggcgg aggcggcgga agctgcctgg
      661 tgccgcgtgg agggaccgcg agagacggcg gtcggaggag ccggggttcc cgccggaggc
      721 tcagacgtct tcccccaggg gcctggggca gcgcgccgtc cctggggctg ccccccgggg
      781 gacgaggaca agacgagcgc ctctcctcgc gtggacggca gccgcgcgcc tagtcccgcc
      841 gggcccgagc cccccgtgcc gccccccgtc tgccccagga agcgcggcgc ggagggcgtg
      901 ggcggcggcc ccgcggaccg cccggcgccc ggctcgaccc cgctcaagaa accccgccgg
      961 aactcagaag agcagtcggg cggggcggcg gcggcggcgg ccgcgcagga ggaggaggag
     1021 atggagaccg gtaacgtggc taacctcatt agcatcttcg gttccagctt ctcgggactc
     1081 ttacggaaaa gccccggggg cggccgggag gaagcggagg gagaggagag cggtccggaa
     1141 gccgccgagc ccgggcagat ctgctgcgat aagccggtgc tgagagacat caacccttgg
     1201 agcactgcca tcgtggcctt ctgagccctc gggtccccga gcgggaagga gattgagcag
     1261 cgggcgtccc gacgtgaggg ctgggcctct ccggctgcga ggacgcccca gaggccgtcg
     1321 gcgcggagcg cgaggaggag accgggttcc gccgggcggc accgactgct ctcgggcttg
     1381 gcggccggct gtgcggagcc tctcgggtct cctcttgaga ctgggcagtg tgaggcgtgt
     1441 cggaggagca cgatcgtgga cttttgtgtt tgtgtctgtt agtttgtctc gttgaattaa
     1501 gactattttg tctctctgga gtgcatcccc ccttcccctg ggcttgggag gttgggggca
     1561 gacagggact ttccgccgcc ggcagcaccg agaaggaagc ggcgagaaag gccgggcccg
     1621 gggagttccc cgttcgctgt cgggggagga agggacttta cacagactcc tcacgtgaag
     1681 ctagagccgc accggggcca ggagcggcgt ttcctcacag gatatcctca gactagaggg
     1741 atttcgtctg gactaggggc ttgtggtatt tctctccctc cccacctttc tctctccctg
     1801 aagaaacgtt tataccctgt aatcactctg ggaaagggga gcgttagcgg cccttgtctt
     1861 ccccacaggg aaaatgctta atgaacttca cggcagagtt caagcttgga aatacggagt
     1921 ttatagagaa aagatttatt ttttaaaagc tctagatcag acctactaca cagtgctttt
     1981 aaaaactgtt taaggaagca aagtttacag acagaagccc taagtggaaa gaccttatgg
     2041 gtttgtagat agtgactcca gtctttgttg tataaaggtt gggggagctg acaaggtttt
     2101 tgtacagtat tttctccttc gtcgttttga tttttgtata aaaatgtaac tacgtgtcta
     2161 acacgtatta aatattttga agcaacttca
//
LOCUS       XM_032609465            5479 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 2A (SH2D2A),
            transcript variant X1, mRNA.
ACCESSION   XM_032609465
VERSION     XM_032609465.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5479
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5479
                     /gene="SH2D2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742179"
     CDS             104..1375
                     /gene="SH2D2A"
                     /codon_start=1
                     /product="SH2 domain-containing protein 2A isoform X1"
                     /protein_id="XP_032465356.1"
                     /db_xref="GeneID:116742179"
                     /translation="MEFPLAQICPQGSQEAPTITFSTFQPIDLNRRSCQSPGLLPGPR
                     LQAPKAQEVWPSPRASAVHPAAPPQAPGAACSPKDIGKEEVPREGGMSLQAETQAWFQ
                     KTQAHELLQHGAAPAWFHSFITRREAERLLESKPQGCYLVRFSESAVTFVLTYSASRS
                     RTCCRHFLLAQLGDGRHVVLGEDSAHARLQDLLRHYQACPLSPYGETLTEPLARQTPE
                     PAGLSLRTEESDSGSKSQDSQPQYTSILKKEQSAAPMQKDGAGGPKQTSQPPKPKPPI
                     PAKPQLPPEVYTSPAPRPRPTPPRKPSNPIYHEPDEPIEFYAMGRGSPGEAPSNIYAE
                     VEVKVPDSGCEGPPCILRHKVLRKCQSRPVPGSQNPGGQQLHSENSVAEQGPAVPHKP
                     LPRWGHTLPHNLSRQVLQNRGQAWLPLGPPQ"
     misc_feature    431..745
                     /gene="SH2D2A"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(476..478,530..532,599..601,605..607)
                     /gene="SH2D2A"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(602..604,686..688)
                     /gene="SH2D2A"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 ccgggggctg gggtgagagg agagatgagt agctgagtgt gcacaccttt tgagagccca
       61 gacacacacc ctgctccagg ggctcctttc ctaggctgcc cccatggagt tccccctggc
      121 ccagatatgc cctcaaggga gtcaagaagc ccccaccata accttcagca ccttccagcc
      181 catagacttg aaccgcagga gctgccagag cccgggcttg ctgccgggac ccagactcca
      241 ggccccgaag gcccaggaag tctggcccag ccccagggcc tccgctgtgc accctgcggc
      301 accaccccag gccccagggg ctgcctgcag cccaaaggat attgggaagg aagaggtgcc
      361 tagggaagga ggcatgtccc tgcaggctga gactcaggct tggttccaga agacccaggc
      421 ccatgagctc ctgcagcatg gggcagcccc tgcttggttc cacagcttca tcacccgaag
      481 agaggctgag aggctgctag agagcaagcc tcagggatgc tacttggtgc gtttcagtga
      541 gagcgccgtg acctttgtgc tgacttacag tgcctccagg agccggactt gctgccgcca
      601 cttcctgctg gcccaactcg gggacgggcg ccacgtggtg ctgggcgagg acagcgccca
      661 cgcgcggctg caggacctgc tgcggcacta ccaggcgtgc ccgctgagcc cctacgggga
      721 gacgctcacc gagcccctcg cccgccagac tcctgagccc gcaggactgt ccctaaggac
      781 tgaagaatca gactctggaa gcaaaagcca ggactcacaa cctcagtata cctcaatcct
      841 caaaaaggag caaagcgcag cccccatgca gaaagatggg gcgggggggc caaagcagac
      901 gtcccagccg cccaagccca agcctcccat ccccgccaag cctcagctgc ctcccgaagt
      961 ctacacaagc cccgctccga gaccccgccc aaccccgccc cgcaagccct ccaaccccat
     1021 ctaccacgaa cctgatgaac ccatagagtt ctatgccatg ggccgtggca gccccgggga
     1081 agcccccagc aacatttatg ccgaggtgga ggtgaaggtg cctgattcag ggtgtgaggg
     1141 cccgccgtgc atcctcaggc acaaagtcct acggaagtgc cagtccaggc ctgtcccagg
     1201 aagccagaat ccaggtggcc aacaactgca ttctgagaat tctgtggctg aacaaggccc
     1261 tgctgtgccc cacaagcccc taccccgctg ggggcacacc ctcccccaca acctttctag
     1321 acaggtgctt cagaacagag gtcaggcgtg gctccccctg gggcctcctc agtagctgct
     1381 gagtctgagc tggggtgggg cgggggtggg ggacaacttg gaacagcggg tccagaaacc
     1441 ttcacgcaca cccaggcgcc cttctcacaa aatgtggatg gaacaaactg tagatgatca
     1501 aagctggaaa ggacctcagc catcatccat tgcaaagatg gcaaaaaggt gtcacctcgc
     1561 atgccaagtc caatccattc attgtggctg cctagagcgc tgcaatggaa aggatgttga
     1621 ggtcatattt gaactcagca gaaaagaact ctgtgattga ttagtgatgt ctgccacgag
     1681 tgagcgaagg aagaggagcg gccctctcct ttgctcttac tgatcgagtt cgactccctc
     1741 actgtgcaga taaggaaaca aaaccagaga gggatagtgg cttagtcaag gtcaaggact
     1801 agaaccccag cttcctgttt agtgctctgt tccatacccc acattcacta actctttacc
     1861 acgggaaatg tcagagattt cctcaggaaa tctggctgct ttccagagtt ctgcctcatt
     1921 ggggcccagg tgcttgttcc cctcctccag atcccagctt acccctgttc ccctaactgg
     1981 tctggggccc cacaaagaag cctggaggtc agaggagcaa atgtggagtc agcttctttt
     2041 tagggacaca cccactggtt ccctcccaag agtctccaag aatccaatgg ctcagtgctt
     2101 gcctctaagg aagtgggcta ggagggccct gctgcagccc gctgccctgg tttctcctcc
     2161 tggagtctga tttccttggc cctctgagcc tttgagtctg ggccctggtc caatgctgct
     2221 gttgtctgag gaacagtttg gcgagaacag atgttagaac ttgtttgttg attcttgtct
     2281 ggctaataaa tcatcgccaa ccacctcccc caacagggat tcaagtactc caggctcctt
     2341 ctgtctctcc ttctgactct ctctctcata ttgtggaagg caagtggttg aacgaccatt
     2401 gcaatggtgg gagaagggtc gggggttgag agactcctgg gcaagggtca cagatctatg
     2461 ggctgggggc agggagacag caaggcaagg gacacagacc tctctctgaa aagtattctt
     2521 tccctaactg gggtgagctg ggcagctagc caggggcaga ggggtggcta catcacctgc
     2581 gggttgccag gaaagaaagg ggcagggagg ggagtggttg aaaggtagcc cctgcacctc
     2641 cttccccagc cccctgccaa acacaggact gggaggggga gggggcattg ttagcctatg
     2701 tgtgtgagcc ccttaggagg atggggagcc cccctgcagc agctcccagc ctcttgggct
     2761 taggcctccc ctgttcctct tatgaggctt cctcctgtct gcccagaccc acttcagggc
     2821 catcttcctg cctctgtggc caagctctga attctaagct tcaaccacct agaagaatct
     2881 gccttgggtc ttatttttct atcagactgg aggctccctg aggcagggct gtgtctgcgc
     2941 ctggatggcc ctgagggctc ataatagact gcccccagga gccactcagg gggcttctgg
     3001 gtactcctgt ggtcccagcc tgttctatga gagttcagtc aagacaatca gagcctatcg
     3061 aggtctctct tcctgccaag gggccctggg tacttgcctg aatcacagaa gccccccaga
     3121 ccccctccct gaagacatat tccctaggcc taggtgctgc caccaccatg ccacccccag
     3181 cctggtgcag ggccagctcc agtgactagt gaattcccct cctttccact cagtgctaat
     3241 cagctcaagg agaaatatgg ttgctgagtc aacagagtgg ggttccactt ccttctgtct
     3301 gtaggtctaa actccctcct gagcaagaga cgggggaagg gaggggagca gatggctttg
     3361 ggaggggagg ctgaaagtgc aagaaagttc ttagattaga ctcagggagt cacctcatgg
     3421 ctggttcctc gttgcagggg aggaggcagg aaaaggagag gcttgctgta tagcaagggc
     3481 tggaaatcag agtcagaaga tgggatttcc ttagacttcg ggatagaaca ggatggcggg
     3541 ttcggggagg ggacagaaat gcctagggac ccacttggtg tttctgaagg agcaaagcct
     3601 gctagaaagg ggtgagcagg acccagggaa tctccccctc cctcttcagc tcctcacagc
     3661 caggggtgga ctccccaaag tgggtgggag gatccagatg atggcattgt caggagccct
     3721 gggttcctgt tacggctgtt tgctaacaag ctgcccagcc tttaacaggg gaactttttt
     3781 ctgcaccact gttccctaca ttgctttgaa atggagagaa tgccttattt gcccacaggg
     3841 ctgctgtcca gagcagatga gaccaggcag cgaggggctt ggccgagcag gaccgctggg
     3901 actagaaggg acttcagacc ccttgtgact gacttcttgg ttcaaccaaa tcggaaactg
     3961 aggtctagag aggggaggtg acagggtacc ggagatagga ccagatcttg tcatcccagt
     4021 ccaatgttcc cccttatagc gtgaggtccc tcccaggcca aaggataagg ccccggtcct
     4081 cccgagggct ccagctgcag gcccagccct gacgaccaag gtggtggaac ctcccttctc
     4141 cgcaccatag ccataggcac ccctgcacca tcctgctgat ttcactccca cgggggcctg
     4201 gggctgcggt gagacctcag gatagagaag ttgagtaact agtacaggaa agggcgcctg
     4261 gcgattgtgc tgagcaggtt cctctgcccc agcagagacc actcgggcag ggagggggag
     4321 ggcatttccc agctgactca gtctcccgtg gttattccat ccctccagct tcctctaggg
     4381 agggctctct ctggctcagc cccctgtcag aaagaagagt ctcctacccc gagccccaga
     4441 tccccttcag agcctgcaga aggccttgct gcaagtggag gttccagctt tttcctccag
     4501 ttccagcccc ttcagcacca tggccgaccc tgaagtcttt tttttcctgc tcctgtctcc
     4561 cttaagctgt cccctttatc ctatcagctc cctcagctaa tgcagtagac agtctcagta
     4621 aagtaccctg taactctggc tcaggggacc aaggcagggg cagggggctg agaagctatt
     4681 aaacccccaa cctcagcagt cccgagtcta gagcacatca ttccccatgg acccacttaa
     4741 ggaggactgg gggccagtca tcactgaggc cccatcccca gctacctcta ctggccttag
     4801 aacatgtgtc cccaccggaa acaaagctga gcagagggag agggggtaaa agaaggttgg
     4861 gagcagacag caaagccttc cagcaccctt gccacctccc caggccccac agaacttcaa
     4921 ccaccccctc aacagactgc ggcttcttgg acagcaagct cagcacccag ctggggtgag
     4981 gacctggcca ggtccctgcc caagggtcag agctgaaacc ccctttgtga cagctgtgcc
     5041 atctctgggc agttcctaag tctgcgtcct aagcctgttc ctgtggacct caccttcctc
     5101 agctcctctg ccctgggcaa tgcagcactg aacacttggg ctttgcccca gaacctccaa
     5161 caccttctag ggccatgggg agccacttct gaccaaggcc ttcacctccc gtccccacca
     5221 accccgtccc ttggctgtta ctgccatgcc aatttgagcc aagttatcat tccttattcc
     5281 tccttccctc tccctcatcc ctgtcttctc tttcctgttt atttatcaga acttgaggtt
     5341 attacctcag gaagccctcc caaataaagt ctgtccattt tctaacttgt atttctcttg
     5401 gtaaccaaga aattctaacc accaaataat aatgtcatct ttggtaggag taaaaagtgg
     5461 ctttaaaaaa aatggctta
//
LOCUS       XM_032609474            2310 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 2A (SH2D2A),
            transcript variant X2, mRNA.
ACCESSION   XM_032609474
VERSION     XM_032609474.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2310
                     /gene="SH2D2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742179"
     CDS             104..1366
                     /gene="SH2D2A"
                     /codon_start=1
                     /product="SH2 domain-containing protein 2A isoform X2"
                     /protein_id="XP_032465365.1"
                     /db_xref="GeneID:116742179"
                     /translation="MEFPLAQICPQGSQEAPTITFSTFQPIDLNRRSCQSPGLLPGPR
                     LQAPKAQEVWPSPRASAVHPAAPPQAPGAACSPKDIGKEEVPREGGMSLQAETQAWFQ
                     KTQAHELLQHGAAPAWFHSFITRREAERLLESKPQGCYLVRFSESAVTFVLTYRSRTC
                     CRHFLLAQLGDGRHVVLGEDSAHARLQDLLRHYQACPLSPYGETLTEPLARQTPEPAG
                     LSLRTEESDSGSKSQDSQPQYTSILKKEQSAAPMQKDGAGGPKQTSQPPKPKPPIPAK
                     PQLPPEVYTSPAPRPRPTPPRKPSNPIYHEPDEPIEFYAMGRGSPGEAPSNIYAEVEV
                     KVPDSGCEGPPCILRHKVLRKCQSRPVPGSQNPGGQQLHSENSVAEQGPAVPHKPLPR
                     WGHTLPHNLSRQVLQNRGQAWLPLGPPQ"
     misc_feature    431..736
                     /gene="SH2D2A"
                     /note="Src homology 2 domain found in the SH2 domain
                     containing protein 2A (SH2D2A); Region: SH2_SH2D2A;
                     cd10416"
                     /db_xref="CDD:198279"
     misc_feature    order(476..478,530..532,590..592,596..598)
                     /gene="SH2D2A"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198279"
     misc_feature    order(593..595,680..682)
                     /gene="SH2D2A"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198279"
ORIGIN      
        1 ccgggggctg gggtgagagg agagatgagt agctgagtgt gcacaccttt tgagagccca
       61 gacacacacc ctgctccagg ggctcctttc ctaggctgcc cccatggagt tccccctggc
      121 ccagatatgc cctcaaggga gtcaagaagc ccccaccata accttcagca ccttccagcc
      181 catagacttg aaccgcagga gctgccagag cccgggcttg ctgccgggac ccagactcca
      241 ggccccgaag gcccaggaag tctggcccag ccccagggcc tccgctgtgc accctgcggc
      301 accaccccag gccccagggg ctgcctgcag cccaaaggat attgggaagg aagaggtgcc
      361 tagggaagga ggcatgtccc tgcaggctga gactcaggct tggttccaga agacccaggc
      421 ccatgagctc ctgcagcatg gggcagcccc tgcttggttc cacagcttca tcacccgaag
      481 agaggctgag aggctgctag agagcaagcc tcagggatgc tacttggtgc gtttcagtga
      541 gagcgccgtg acctttgtgc tgacttacag gagccggact tgctgccgcc acttcctgct
      601 ggcccaactc ggggacgggc gccacgtggt gctgggcgag gacagcgccc acgcgcggct
      661 gcaggacctg ctgcggcact accaggcgtg cccgctgagc ccctacgggg agacgctcac
      721 cgagcccctc gcccgccaga ctcctgagcc cgcaggactg tccctaagga ctgaagaatc
      781 agactctgga agcaaaagcc aggactcaca acctcagtat acctcaatcc tcaaaaagga
      841 gcaaagcgca gcccccatgc agaaagatgg ggcggggggg ccaaagcaga cgtcccagcc
      901 gcccaagccc aagcctccca tccccgccaa gcctcagctg cctcccgaag tctacacaag
      961 ccccgctccg agaccccgcc caaccccgcc ccgcaagccc tccaacccca tctaccacga
     1021 acctgatgaa cccatagagt tctatgccat gggccgtggc agccccgggg aagcccccag
     1081 caacatttat gccgaggtgg aggtgaaggt gcctgattca gggtgtgagg gcccgccgtg
     1141 catcctcagg cacaaagtcc tacggaagtg ccagtccagg cctgtcccag gaagccagaa
     1201 tccaggtggc caacaactgc attctgagaa ttctgtggct gaacaaggcc ctgctgtgcc
     1261 ccacaagccc ctaccccgct gggggcacac cctcccccac aacctttcta gacaggtgct
     1321 tcagaacaga ggtcaggcgt ggctccccct ggggcctcct cagtagctgc tgagtctgag
     1381 ctggggtggg gcgggggtgg gggacaactt ggaacagcgg gtccagaaac cttcacgcac
     1441 acccaggcgc ccttctcaca aaatgtggat ggaacaaact gtagatgatc aaagctggaa
     1501 aggacctcag ccatcatcca ttgcaaagat ggcaaaaagg tgtcacctcg catgccaagt
     1561 ccaatccatt cattgtggct gcctagagcg ctgcaatgga aaggatgttg aggtcatatt
     1621 tgaactcagc agaaaagaac tctgtgattg attagtgatg tctgccacga gtgagcgaag
     1681 gaagaggagc ggccctctcc tttgctctta ctgatcgagt tcgactccct cactgtgcag
     1741 ataaggaaac aaaaccagag agggatagtg gcttagtcaa ggtcaaggac tagaacccca
     1801 gcttcctgtt tagtgctctg ttccataccc cacattcact aactctttac cacgggaaat
     1861 gtcagagatt tcctcaggaa atctggctgc tttccagagt tctgcctcat tggggcccag
     1921 gtgcttgttc ccctcctcca gatcccagct tacccctgtt cccctaactg gtctggggcc
     1981 ccacaaagaa gcctggaggt cagaggagca aatgtggagt cagcttcttt ttagggacac
     2041 acccactggt tccctcccaa gagtctccaa gaatccaatg gctcagtgct tgcctctaag
     2101 gaagtgggct aggagggccc tgctgcagcc cgctgccctg gtttctcctc ctggagtctg
     2161 atttccttgg ccctctgagc ctttgagtct gggccctggt ccaatgctgc tgttgtctga
     2221 ggaacagttt ggcgagaaca gatgttagaa cttgtttgtt gattcttgtc tggctaataa
     2281 atcatcgcca accacctccc ccaacaggga
//
LOCUS       XM_032609488            1484 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell adhesion molecule 3 (CADM3),
            transcript variant X1, mRNA.
ACCESSION   XM_032609488
VERSION     XM_032609488.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1484
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1484
                     /gene="CADM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742183"
     CDS             155..1447
                     /gene="CADM3"
                     /codon_start=1
                     /product="cell adhesion molecule 3 isoform X1"
                     /protein_id="XP_032465379.1"
                     /db_xref="GeneID:116742183"
                     /translation="MGAPSALPLLLLFASCWAPGGANLSQDGYWQEQNLELGTLAPLE
                     EAMSSTVWSSPDMLASQDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTL
                     YFGEKRALRDNRIQLVRSTPHELSISISSVALADEGEYTCSIFTMPVRTAKSLVTVLG
                     IPQKPIITGYKSSLREKDTTTLNCQSSGSKPAAQLTWRKGDQELHGEPTRIQEDPNGK
                     TFTVSSSVTFQVTREDDGADIVCSVNHESLKGADRSTAQRIEVLYTPTAKIRPDPPHP
                     REGQKLLLHCEGRGNPAPQQYLWEKEGSVPPLKMTQESALIFPFLNKSDSGTYGCTAT
                     SNMGSYKAYYTLNVNDPSPVPSSSSTYHAIIGGIVAFIVFLLLVLLIFLGHYLIRHKG
                     TYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKKEYFI"
     misc_feature    344..628
                     /gene="CADM3"
                     /note="First (N-terminal) immunoglobulin (Ig)-like domain
                     of nectin-like molecule-1 (Necl-1); member of the V-set of
                     Ig superfamily (IgSF) domains; Region: IgV_1_Necl-1;
                     cd05882"
                     /db_xref="CDD:143290"
     misc_feature    344..355
                     /gene="CADM3"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:143290"
     misc_feature    347..403
                     /gene="CADM3"
                     /note="FR1 [structural motif]; Region: FR1"
                     /db_xref="CDD:143290"
     misc_feature    356..376
                     /gene="CADM3"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:143290"
     misc_feature    380..406
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:143290"
     misc_feature    404..421
                     /gene="CADM3"
                     /note="CDR1 [structural motif]; Region: CDR1"
                     /db_xref="CDD:143290"
     misc_feature    order(422..424,431..433,446..451,455..457,473..475,
                     479..481,587..589)
                     /gene="CADM3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143290"
     misc_feature    422..445
                     /gene="CADM3"
                     /note="FR2 [structural motif]; Region: FR2"
                     /db_xref="CDD:143290"
     misc_feature    422..442
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:143290"
     misc_feature    446..481
                     /gene="CADM3"
                     /note="CDR2 [structural motif]; Region: CDR2"
                     /db_xref="CDD:143290"
     misc_feature    452..466
                     /gene="CADM3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:143290"
     misc_feature    470..481
                     /gene="CADM3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:143290"
     misc_feature    482..589
                     /gene="CADM3"
                     /note="FR3 [structural motif]; Region: FR3"
                     /db_xref="CDD:143290"
     misc_feature    494..517
                     /gene="CADM3"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:143290"
     misc_feature    524..544
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:143290"
     misc_feature    563..589
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:143290"
     misc_feature    590..601
                     /gene="CADM3"
                     /note="CDR3 [structural motif]; Region: CDR3"
                     /db_xref="CDD:143290"
     misc_feature    599..628
                     /gene="CADM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:143290"
     misc_feature    605..628
                     /gene="CADM3"
                     /note="FR4 [structural motif]; Region: FR4"
                     /db_xref="CDD:143290"
     misc_feature    629..937
                     /gene="CADM3"
                     /note="Second immunoglobulin (Ig)-like domain of
                     nectin-like molcule-1 (Necl-1); member of the I-set of Ig
                     superfamily domains; Region: IgI_2_Necl-1; cd07705"
                     /db_xref="CDD:409502"
     misc_feature    629..640
                     /gene="CADM3"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409502"
     misc_feature    647..661
                     /gene="CADM3"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409502"
     misc_feature    686..718
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409502"
     misc_feature    725..754
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409502"
     misc_feature    755..766
                     /gene="CADM3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409502"
     misc_feature    773..796
                     /gene="CADM3"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409502"
     misc_feature    809..841
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409502"
     misc_feature    863..889
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409502"
     misc_feature    911..934
                     /gene="CADM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409502"
     misc_feature    983..1198
                     /gene="CADM3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    998..1012
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1040..1054
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1094..1108
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1136..1153
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1310..1357
                     /gene="CADM3"
                     /note="putative band 4.1 homologues' binding motif;
                     Region: 4.1m; smart00294"
                     /db_xref="CDD:128590"
ORIGIN      
        1 gccggcttcc tcccggtccc cgcctcggac ccgggctccg aagcggctcg ggggcgccct
       61 ttcggtcagt gtcgtcgtct actccctccc cagccccagc ccctggggac ccaggctcgc
      121 cagcgcccag ccagggagcc ggccgggaag cgcgatgggg gccccttccg ccctgcccct
      181 gctcctgctt ttcgccagct gctgggcgcc cggcggggcc aacctctccc aggacggcta
      241 ctggcaagag cagaatttgg agctggggac tctggctcca ctcgaagagg ccatgagctc
      301 cacagtctgg agcagccctg acatgctggc cagtcaagac agtcagccct ggacatctga
      361 tgagacagtg gtggctggtg gcaccgtggt gctcaagtgc caggtcaaag atcatgagga
      421 ttcatccctg caatggtcta accctgccca gcagactctc tactttgggg agaagagagc
      481 ccttcgagat aatcggattc agctggtcag atcgacgccc cacgagctca gcatcagcat
      541 cagcagcgtg gccctggccg acgagggcga atacacctgc tccatcttca ctatgcccgt
      601 gagaactgcc aagtccctcg tcaccgtgct cggaatccca cagaagccca taatcactgg
      661 ctacaagtca tcgttacggg aaaaggatac aactacccta aactgtcagt cttctgggag
      721 caaacctgca gcccagctca cctggaggaa gggtgaccaa gagcttcatg gggaaccaac
      781 ccgaatacag gaagatccca atggcaaaac cttcaccgtg agcagctcag tcaccttcca
      841 ggtcacccgg gaggacgatg gggcagacat tgtatgctct gtgaaccacg aatctctcaa
      901 gggagctgac agatccaccg ctcaacgcat tgaagtttta tacacaccaa cagcgaagat
      961 taggccagac cctccgcacc cccgcgaggg ccagaagctg ttgctccact gcgaggggcg
     1021 tggcaatccc gccccccagc agtacctatg ggagaaggag ggcagtgtgc cgccgctgaa
     1081 gatgacccag gagagcgccc tgatcttccc cttcctcaac aagagtgaca gcggcaccta
     1141 tggctgcaca gccaccagca acatgggcag ctacaaggct tactacaccc tcaatgtgaa
     1201 cgatcccagt ccggtgccct catcctccag cacctaccac gccatcattg gtgggatcgt
     1261 agctttcatc gtcttcctgc tgctcgtcct gcttatcttc cttggccact acttgatccg
     1321 gcacaaagga acctacctga cacacgaggc gaaaggctct gacgacgccc cagatgcgga
     1381 cacagccatc atcaacgcag aaggcgggca gtcgggcggg gacgacaaga aggaatattt
     1441 catctagggg cagcccccca gggaccccgt ggggactgct gggg
//
LOCUS       XM_032609495            1653 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell adhesion molecule 3 (CADM3),
            transcript variant X2, mRNA.
ACCESSION   XM_032609495
VERSION     XM_032609495.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1653
                     /gene="CADM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742183"
     CDS             155..1345
                     /gene="CADM3"
                     /codon_start=1
                     /product="cell adhesion molecule 3 isoform X2"
                     /protein_id="XP_032465386.1"
                     /db_xref="GeneID:116742183"
                     /translation="MGAPSALPLLLLFASCWAPGGANLSQDDSQPWTSDETVVAGGTV
                     VLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVRSTPHELSISISSVALAD
                     EGEYTCSIFTMPVRTAKSLVTVLGIPQKPIITGYKSSLREKDTTTLNCQSSGSKPAAQ
                     LTWRKGDQELHGEPTRIQEDPNGKTFTVSSSVTFQVTREDDGADIVCSVNHESLKGAD
                     RSTAQRIEVLYTPTAKIRPDPPHPREGQKLLLHCEGRGNPAPQQYLWEKEGSVPPLKM
                     TQESALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVNDPSPVPSSSSTYHAIIGGI
                     VAFIVFLLLVLLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKK
                     EYFI"
     misc_feature    242..526
                     /gene="CADM3"
                     /note="First (N-terminal) immunoglobulin (Ig)-like domain
                     of nectin-like molecule-1 (Necl-1); member of the V-set of
                     Ig superfamily (IgSF) domains; Region: IgV_1_Necl-1;
                     cd05882"
                     /db_xref="CDD:143290"
     misc_feature    242..253
                     /gene="CADM3"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:143290"
     misc_feature    245..301
                     /gene="CADM3"
                     /note="FR1 [structural motif]; Region: FR1"
                     /db_xref="CDD:143290"
     misc_feature    254..274
                     /gene="CADM3"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:143290"
     misc_feature    278..304
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:143290"
     misc_feature    302..319
                     /gene="CADM3"
                     /note="CDR1 [structural motif]; Region: CDR1"
                     /db_xref="CDD:143290"
     misc_feature    order(320..322,329..331,344..349,353..355,371..373,
                     377..379,485..487)
                     /gene="CADM3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143290"
     misc_feature    320..343
                     /gene="CADM3"
                     /note="FR2 [structural motif]; Region: FR2"
                     /db_xref="CDD:143290"
     misc_feature    320..340
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:143290"
     misc_feature    344..379
                     /gene="CADM3"
                     /note="CDR2 [structural motif]; Region: CDR2"
                     /db_xref="CDD:143290"
     misc_feature    350..364
                     /gene="CADM3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:143290"
     misc_feature    368..379
                     /gene="CADM3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:143290"
     misc_feature    380..487
                     /gene="CADM3"
                     /note="FR3 [structural motif]; Region: FR3"
                     /db_xref="CDD:143290"
     misc_feature    392..415
                     /gene="CADM3"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:143290"
     misc_feature    422..442
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:143290"
     misc_feature    461..487
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:143290"
     misc_feature    488..499
                     /gene="CADM3"
                     /note="CDR3 [structural motif]; Region: CDR3"
                     /db_xref="CDD:143290"
     misc_feature    497..526
                     /gene="CADM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:143290"
     misc_feature    503..526
                     /gene="CADM3"
                     /note="FR4 [structural motif]; Region: FR4"
                     /db_xref="CDD:143290"
     misc_feature    527..835
                     /gene="CADM3"
                     /note="Second immunoglobulin (Ig)-like domain of
                     nectin-like molcule-1 (Necl-1); member of the I-set of Ig
                     superfamily domains; Region: IgI_2_Necl-1; cd07705"
                     /db_xref="CDD:409502"
     misc_feature    527..538
                     /gene="CADM3"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409502"
     misc_feature    545..559
                     /gene="CADM3"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409502"
     misc_feature    584..616
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409502"
     misc_feature    623..652
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409502"
     misc_feature    653..664
                     /gene="CADM3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409502"
     misc_feature    671..694
                     /gene="CADM3"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409502"
     misc_feature    707..739
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409502"
     misc_feature    761..787
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409502"
     misc_feature    809..832
                     /gene="CADM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409502"
     misc_feature    881..1096
                     /gene="CADM3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    896..910
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    938..952
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    992..1006
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1034..1051
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1208..1255
                     /gene="CADM3"
                     /note="putative band 4.1 homologues' binding motif;
                     Region: 4.1m; smart00294"
                     /db_xref="CDD:128590"
ORIGIN      
        1 gccggcttcc tcccggtccc cgcctcggac ccgggctccg aagcggctcg ggggcgccct
       61 ttcggtcagt gtcgtcgtct actccctccc cagccccagc ccctggggac ccaggctcgc
      121 cagcgcccag ccagggagcc ggccgggaag cgcgatgggg gccccttccg ccctgcccct
      181 gctcctgctt ttcgccagct gctgggcgcc cggcggggcc aacctctccc aggacgacag
      241 tcagccctgg acatctgatg agacagtggt ggctggtggc accgtggtgc tcaagtgcca
      301 ggtcaaagat catgaggatt catccctgca atggtctaac cctgcccagc agactctcta
      361 ctttggggag aagagagccc ttcgagataa tcggattcag ctggtcagat cgacgcccca
      421 cgagctcagc atcagcatca gcagcgtggc cctggccgac gagggcgaat acacctgctc
      481 catcttcact atgcccgtga gaactgccaa gtccctcgtc accgtgctcg gaatcccaca
      541 gaagcccata atcactggct acaagtcatc gttacgggaa aaggatacaa ctaccctaaa
      601 ctgtcagtct tctgggagca aacctgcagc ccagctcacc tggaggaagg gtgaccaaga
      661 gcttcatggg gaaccaaccc gaatacagga agatcccaat ggcaaaacct tcaccgtgag
      721 cagctcagtc accttccagg tcacccggga ggacgatggg gcagacattg tatgctctgt
      781 gaaccacgaa tctctcaagg gagctgacag atccaccgct caacgcattg aagttttata
      841 cacaccaaca gcgaagatta ggccagaccc tccgcacccc cgcgagggcc agaagctgtt
      901 gctccactgc gaggggcgtg gcaatcccgc cccccagcag tacctatggg agaaggaggg
      961 cagtgtgccg ccgctgaaga tgacccagga gagcgccctg atcttcccct tcctcaacaa
     1021 gagtgacagc ggcacctatg gctgcacagc caccagcaac atgggcagct acaaggctta
     1081 ctacaccctc aatgtgaacg atcccagtcc ggtgccctca tcctccagca cctaccacgc
     1141 catcattggt gggatcgtag ctttcatcgt cttcctgctg ctcgtcctgc ttatcttcct
     1201 tggccactac ttgatccggc acaaaggaac ctacctgaca cacgaggcga aaggctctga
     1261 cgacgcccca gatgcggaca cagccatcat caacgcagaa ggcgggcagt cgggcgggga
     1321 cgacaagaag gaatatttca tctaggggca gccccccagg gaccccgtgg ggactgctgg
     1381 ggtcatcacc aacctggact tgtacagagc gaccccaggg ccgcccctcc cgcttactcc
     1441 ccagcgcccc cccacccccc tgtacagaat gtctgctttg ggtgcggttt tgtactcggt
     1501 ttggaatggg gagggaggag ggcgggggga gggagggttg ccctcagccc tttccgtggc
     1561 ttctctgcgt ttgggttatt attatttttg taacaatccc aaatcaaatc cgtctccagg
     1621 ctggaggggc aggggtcctg gggtgaggaa agc
//
LOCUS       XM_032609503            1358 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell adhesion molecule 3 (CADM3),
            transcript variant X3, mRNA.
ACCESSION   XM_032609503
VERSION     XM_032609503.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1358
                     /gene="CADM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742183"
     CDS             155..1321
                     /gene="CADM3"
                     /codon_start=1
                     /product="cell adhesion molecule 3 isoform X3"
                     /protein_id="XP_032465394.1"
                     /db_xref="GeneID:116742183"
                     /translation="MGAPSALPLLLLFASCWAPGGANLSQDGYWQEQNLELGTLAPLE
                     EAMSSTVWSSPDMLASQDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTL
                     YFGEKRALRDNRIQLVRSTPHELSISISSVALADEGEYTCSIFTMPVRTAKSLVTVLG
                     IPQKPIITGYKSSLREKDTTTLNCQSSGSKPAAQLTWRKGDQELHGEPTRIQEDPNGK
                     TFTVSSSVTFQVTREDDGADIVCSVNHESLKGADRSTAQRIEVLYTPTAKIRPDPPHP
                     REGQKLLLHCEGRGNPAPQQYLWEKEGSVPPLKMTQESALIFPFLNKSDSGTYGCTAT
                     SNMGSYKAYYTLNVNGTYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKKEYFI"
     misc_feature    344..628
                     /gene="CADM3"
                     /note="First (N-terminal) immunoglobulin (Ig)-like domain
                     of nectin-like molecule-1 (Necl-1); member of the V-set of
                     Ig superfamily (IgSF) domains; Region: IgV_1_Necl-1;
                     cd05882"
                     /db_xref="CDD:143290"
     misc_feature    344..355
                     /gene="CADM3"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:143290"
     misc_feature    347..403
                     /gene="CADM3"
                     /note="FR1 [structural motif]; Region: FR1"
                     /db_xref="CDD:143290"
     misc_feature    356..376
                     /gene="CADM3"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:143290"
     misc_feature    380..406
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:143290"
     misc_feature    404..421
                     /gene="CADM3"
                     /note="CDR1 [structural motif]; Region: CDR1"
                     /db_xref="CDD:143290"
     misc_feature    order(422..424,431..433,446..451,455..457,473..475,
                     479..481,587..589)
                     /gene="CADM3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143290"
     misc_feature    422..445
                     /gene="CADM3"
                     /note="FR2 [structural motif]; Region: FR2"
                     /db_xref="CDD:143290"
     misc_feature    422..442
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:143290"
     misc_feature    446..481
                     /gene="CADM3"
                     /note="CDR2 [structural motif]; Region: CDR2"
                     /db_xref="CDD:143290"
     misc_feature    452..466
                     /gene="CADM3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:143290"
     misc_feature    470..481
                     /gene="CADM3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:143290"
     misc_feature    482..589
                     /gene="CADM3"
                     /note="FR3 [structural motif]; Region: FR3"
                     /db_xref="CDD:143290"
     misc_feature    494..517
                     /gene="CADM3"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:143290"
     misc_feature    524..544
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:143290"
     misc_feature    563..589
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:143290"
     misc_feature    590..601
                     /gene="CADM3"
                     /note="CDR3 [structural motif]; Region: CDR3"
                     /db_xref="CDD:143290"
     misc_feature    599..628
                     /gene="CADM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:143290"
     misc_feature    605..628
                     /gene="CADM3"
                     /note="FR4 [structural motif]; Region: FR4"
                     /db_xref="CDD:143290"
     misc_feature    629..937
                     /gene="CADM3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    692..706
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    734..748
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    824..838
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    866..883
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    914..925
                     /gene="CADM3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    983..1198
                     /gene="CADM3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    998..1012
                     /gene="CADM3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1040..1054
                     /gene="CADM3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1094..1108
                     /gene="CADM3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1136..1153
                     /gene="CADM3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gccggcttcc tcccggtccc cgcctcggac ccgggctccg aagcggctcg ggggcgccct
       61 ttcggtcagt gtcgtcgtct actccctccc cagccccagc ccctggggac ccaggctcgc
      121 cagcgcccag ccagggagcc ggccgggaag cgcgatgggg gccccttccg ccctgcccct
      181 gctcctgctt ttcgccagct gctgggcgcc cggcggggcc aacctctccc aggacggcta
      241 ctggcaagag cagaatttgg agctggggac tctggctcca ctcgaagagg ccatgagctc
      301 cacagtctgg agcagccctg acatgctggc cagtcaagac agtcagccct ggacatctga
      361 tgagacagtg gtggctggtg gcaccgtggt gctcaagtgc caggtcaaag atcatgagga
      421 ttcatccctg caatggtcta accctgccca gcagactctc tactttgggg agaagagagc
      481 ccttcgagat aatcggattc agctggtcag atcgacgccc cacgagctca gcatcagcat
      541 cagcagcgtg gccctggccg acgagggcga atacacctgc tccatcttca ctatgcccgt
      601 gagaactgcc aagtccctcg tcaccgtgct cggaatccca cagaagccca taatcactgg
      661 ctacaagtca tcgttacggg aaaaggatac aactacccta aactgtcagt cttctgggag
      721 caaacctgca gcccagctca cctggaggaa gggtgaccaa gagcttcatg gggaaccaac
      781 ccgaatacag gaagatccca atggcaaaac cttcaccgtg agcagctcag tcaccttcca
      841 ggtcacccgg gaggacgatg gggcagacat tgtatgctct gtgaaccacg aatctctcaa
      901 gggagctgac agatccaccg ctcaacgcat tgaagtttta tacacaccaa cagcgaagat
      961 taggccagac cctccgcacc cccgcgaggg ccagaagctg ttgctccact gcgaggggcg
     1021 tggcaatccc gccccccagc agtacctatg ggagaaggag ggcagtgtgc cgccgctgaa
     1081 gatgacccag gagagcgccc tgatcttccc cttcctcaac aagagtgaca gcggcaccta
     1141 tggctgcaca gccaccagca acatgggcag ctacaaggct tactacaccc tcaatgtgaa
     1201 cggaacctac ctgacacacg aggcgaaagg ctctgacgac gccccagatg cggacacagc
     1261 catcatcaac gcagaaggcg ggcagtcggg cggggacgac aagaaggaat atttcatcta
     1321 ggggcagccc cccagggacc ccgtggggac tgctgggg
//
LOCUS       XM_032609516            1098 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus atypical chemokine receptor 1 (Duffy
            blood group) (ACKR1), transcript variant X1, mRNA.
ACCESSION   XM_032609516
VERSION     XM_032609516.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1098
                     /gene="ACKR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742195"
     CDS             44..1048
                     /gene="ACKR1"
                     /codon_start=1
                     /product="atypical chemokine receptor 1 isoform X1"
                     /protein_id="XP_032465407.1"
                     /db_xref="GeneID:116742195"
                     /translation="MGNCLHPNVLQVADDNSTKLAIEDKIWSEFLEAYDADYNFTDVE
                     AAAPCHSCILLDDSSLPFFILASVLGILISGAVLYAFLRPLFPRQVYQNWPILVQLAV
                     GSALFSIMVPILARGLSGALITSLCHLAHLVSYGSAFAQALLIGCHACLGPKLRIGHV
                     PGLRLGISVGLWGVAALLSLPITLGSDTSHGLCTVTFSGEWEILRYIHAAACFAIFIL
                     LPLGLLGAKGLKKALGRGPCPWVNILYVWFIFWWPQGMVLGLDSLVRSRAMAVSTCLA
                     QQTLDMLLDLAEALAILHCVATPLLLAQFCYQAIQTSLPSLPLSATQSSHLDILGCKS
                     "
     misc_feature    215..985
                     /gene="ACKR1"
                     /note="Duffy antigen receptor for chemokines, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; Region: 7tmA_ACKR1_DARC;
                     cd15010"
                     /db_xref="CDD:410631"
     misc_feature    218..295
                     /gene="ACKR1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410631"
     misc_feature    320..397
                     /gene="ACKR1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410631"
     misc_feature    order(383..385,392..397,422..439,443..448,455..457,
                     569..571,575..589,656..658,665..673,677..685,689..694,
                     794..796,803..808,812..817,824..826,881..886,890..898,
                     905..907,914..919)
                     /gene="ACKR1"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:410631"
     misc_feature    422..505
                     /gene="ACKR1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410631"
     misc_feature    530..595
                     /gene="ACKR1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410631"
     misc_feature    656..733
                     /gene="ACKR1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410631"
     misc_feature    734..826
                     /gene="ACKR1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410631"
     misc_feature    884..961
                     /gene="ACKR1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410631"
ORIGIN      
        1 tatcccagcc catctctctg cctgccctga gcccagcagt gtcatgggga actgtctgca
       61 cccgaatgtc ctccaggtgg ctgatgacaa ctctactaaa ctggccattg aagacaagat
      121 ttggagtgaa tttcttgagg cgtacgatgc agactataac ttcaccgatg tggaagcagc
      181 tgcaccctgc cactcctgta tcctgctaga cgactcctca ctgcccttct tcatcctcgc
      241 cagtgtcctt ggcatcctga ttagtggagc tgtcctctac gcatttctca gacctctgtt
      301 cccccgtcag gtctaccaga actggcctat cctggtgcag ttggctgtgg gaagtgctct
      361 cttcagcatt atggtgccca tcctggcacg ggggctaagt ggggccctca tcacctccct
      421 ctgccaccta gctcacttgg tctcgtatgg ctcagccttt gcccaagctc tgctgatagg
      481 gtgccatgcc tgcctgggcc ccaaactgcg tataggtcac gtcccaggcc tcaggctggg
      541 gatcagtgtg ggactttggg gagtggctgc cctattgtca ctgccaatca cgctgggcag
      601 tgacacttcc catggactct gcacagtgac cttcagcggg gaatgggaaa ttttgcggta
      661 catacatgct gcagcctgtt ttgccatctt catcttgttg ccactgggtt tgttgggagc
      721 caaggggctg aagaaggcat tgggcagggg gccatgtccc tgggttaata tcctatatgt
      781 ctggttcatt ttctggtggc ctcagggcat ggttctggga ttggactccc tggtgaggtc
      841 cagggccatg gcggtgtcaa catgtctggc ccagcagacc ctggacatgc tgctggacct
      901 ggcagaagcc ctggcaatat tgcactgtgt ggctacaccc ctgctcctcg cccagttctg
      961 ctaccaggcc attcaaactt ctctgccctc cctgcccctc tcggcaacac agtcttctca
     1021 tctggacatc cttggatgca aatcctagct ctcttcccac ctgtcaactt gaattaaagt
     1081 gtatgctgtt tttatgaa
//
LOCUS       XM_032609526            1215 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus atypical chemokine receptor 1 (Duffy
            blood group) (ACKR1), transcript variant X2, mRNA.
ACCESSION   XM_032609526
VERSION     XM_032609526.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1215
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1215
                     /gene="ACKR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742195"
     CDS             173..1165
                     /gene="ACKR1"
                     /codon_start=1
                     /product="atypical chemokine receptor 1 isoform X2"
                     /protein_id="XP_032465417.1"
                     /db_xref="GeneID:116742195"
                     /translation="MGNCLHPVADDNSTKLAIEDKIWSEFLEAYDADYNFTDVEAAAP
                     CHSCILLDDSSLPFFILASVLGILISGAVLYAFLRPLFPRQVYQNWPILVQLAVGSAL
                     FSIMVPILARGLSGALITSLCHLAHLVSYGSAFAQALLIGCHACLGPKLRIGHVPGLR
                     LGISVGLWGVAALLSLPITLGSDTSHGLCTVTFSGEWEILRYIHAAACFAIFILLPLG
                     LLGAKGLKKALGRGPCPWVNILYVWFIFWWPQGMVLGLDSLVRSRAMAVSTCLAQQTL
                     DMLLDLAEALAILHCVATPLLLAQFCYQAIQTSLPSLPLSATQSSHLDILGCKS"
     misc_feature    332..1102
                     /gene="ACKR1"
                     /note="Duffy antigen receptor for chemokines, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; Region: 7tmA_ACKR1_DARC;
                     cd15010"
                     /db_xref="CDD:410631"
     misc_feature    335..412
                     /gene="ACKR1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410631"
     misc_feature    437..514
                     /gene="ACKR1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410631"
     misc_feature    order(500..502,509..514,539..556,560..565,572..574,
                     686..688,692..706,773..775,782..790,794..802,806..811,
                     911..913,920..925,929..934,941..943,998..1003,1007..1015,
                     1022..1024,1031..1036)
                     /gene="ACKR1"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:410631"
     misc_feature    539..622
                     /gene="ACKR1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410631"
     misc_feature    647..712
                     /gene="ACKR1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410631"
     misc_feature    773..850
                     /gene="ACKR1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410631"
     misc_feature    851..943
                     /gene="ACKR1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410631"
     misc_feature    1001..1078
                     /gene="ACKR1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410631"
ORIGIN      
        1 agtgggcgtg gggtaaagac ttcctgaatg catccccatc ctgcactgcc cgccccatag
       61 ccctgcccag agccaatggc cttcattagt ccctggcact tatctgggaa ccacagccac
      121 tgacagaact atcccagccc atctctctgc ctgccctgag cccagcagtg tcatggggaa
      181 ctgtctgcac ccggtggctg atgacaactc tactaaactg gccattgaag acaagatttg
      241 gagtgaattt cttgaggcgt acgatgcaga ctataacttc accgatgtgg aagcagctgc
      301 accctgccac tcctgtatcc tgctagacga ctcctcactg cccttcttca tcctcgccag
      361 tgtccttggc atcctgatta gtggagctgt cctctacgca tttctcagac ctctgttccc
      421 ccgtcaggtc taccagaact ggcctatcct ggtgcagttg gctgtgggaa gtgctctctt
      481 cagcattatg gtgcccatcc tggcacgggg gctaagtggg gccctcatca cctccctctg
      541 ccacctagct cacttggtct cgtatggctc agcctttgcc caagctctgc tgatagggtg
      601 ccatgcctgc ctgggcccca aactgcgtat aggtcacgtc ccaggcctca ggctggggat
      661 cagtgtggga ctttggggag tggctgccct attgtcactg ccaatcacgc tgggcagtga
      721 cacttcccat ggactctgca cagtgacctt cagcggggaa tgggaaattt tgcggtacat
      781 acatgctgca gcctgttttg ccatcttcat cttgttgcca ctgggtttgt tgggagccaa
      841 ggggctgaag aaggcattgg gcagggggcc atgtccctgg gttaatatcc tatatgtctg
      901 gttcattttc tggtggcctc agggcatggt tctgggattg gactccctgg tgaggtccag
      961 ggccatggcg gtgtcaacat gtctggccca gcagaccctg gacatgctgc tggacctggc
     1021 agaagccctg gcaatattgc actgtgtggc tacacccctg ctcctcgccc agttctgcta
     1081 ccaggccatt caaacttctc tgccctccct gcccctctcg gcaacacagt cttctcatct
     1141 ggacatcctt ggatgcaaat cctagctctc ttcccacctg tcaacttgaa ttaaagtgta
     1201 tgctgttttt atgaa
//
LOCUS       XM_032609540            3802 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc receptor like 5 (FCRL5), transcript
            variant X1, mRNA.
ACCESSION   XM_032609540
VERSION     XM_032609540.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3802
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3802
                     /gene="FCRL5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742200"
     CDS             175..2853
                     /gene="FCRL5"
                     /codon_start=1
                     /product="Fc receptor-like protein 5 isoform X1"
                     /protein_id="XP_032465431.1"
                     /db_xref="GeneID:116742200"
                     /translation="MLLWVSLLVLAPVSGQFATEPKSVIFLHSPWTTVFQGENVTLTC
                     KAFHLDASEKIKWYRWYLLEKTQSETSGNTHEVHESGDYRCQAQDSPLSNRVGLLFSP
                     ANLILQSPLDVFEKESVILRCRAKANTVLKTIKLYKNGKVLEDHTVEIPVGMLTDFHI
                     HQASLKDNGKYHCTGVKEDNELVSSNSVKIEVQELFPRPVLRASSTQPTEGGAVTLTC
                     ETQLSPQRPDVQLQFHFFRDRRSLGSGWRSSPEFWIHTIWRENSGSYWCQAQSMNPSV
                     QKQSQRLQIQVKIPVSHPVLTLRAPRAQAVVGDVMELHCEAWRGSPPILYRFYHEDVS
                     LESCSSPSERGGSCNLLLTAEHSGNYFCEADNGQGFQRSNTVSLTVRVPVSQPVLTLS
                     APRAQAVVGDMMELHCEAWRGSPPILYRFYHEDISLESCSSPSGMGGSCNLLLTAEHS
                     GNYFCEANNGQGAQRSNTVSLTVRVPVSQPVLTLSAPRAQAVVGDMMELHCEAWRGSP
                     PILYRFYHEDVSLESCSSPSGMGASCNLLLTAEHSGNYFCEADNGQGAQRSNTVLLTV
                     RVPVSQPVLTLRAPRAQAVVGDMVELHCEAQGGSPPILYQFYHKDVAVGNRSAPLGGG
                     ASFNLSLTTKHSGNYSCKADNGLGVQQSEMMLLSVIVPVSRPILTLRAPRAQAVVGDV
                     VELHCEAQRGSPPILYQFYHKNVTLESSMSHSGQGVSLNLSLTANHSGTYSCEADNGL
                     GPQCSEAVTLSITGLTGSRSGPVATSVTGGLLSMMGLAAIALLFYCWLPRKAGRKPTF
                     DSSRNPSASDPQEPTYHNVPSWIELQPVYSNVNPNRGDVVYSDVRTVKVENKQAAASD
                     PELLKNTDSCVIYSQVKGAYTAAPKPQLLAASTPHR"
     misc_feature    241..474
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    292..306
                     /gene="FCRL5"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    334..348
                     /gene="FCRL5"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    376..390
                     /gene="FCRL5"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    418..435
                     /gene="FCRL5"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    451..462
                     /gene="FCRL5"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    487..750
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    529..543
                     /gene="FCRL5"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    571..585
                     /gene="FCRL5"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    610..654
                     /gene="FCRL5"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    682..699
                     /gene="FCRL5"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    727..738
                     /gene="FCRL5"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    766..1035
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1060..1314
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1330..1593
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1609..1872
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1891..2109
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    2176..2430
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
ORIGIN      
        1 ttttccctct ttttattgaa gttttcctgt gtccatccat tcttctcccc agctgtttct
       61 cagatgtctt ccttggggct actgtgacag tgtacaactg taagatcaag gccaaacctg
      121 gtattcctga gaaaacctct cttttgttct cagccctggg caggccaagt cttcatgctg
      181 ctgtgggtat cactgctggt cctggctcct gtcagtggac aatttgcaac tgaaccaaaa
      241 tctgtaattt tcctccattc tccatggacc actgtcttcc aaggagagaa tgtgacactg
      301 acttgcaaag catttcactt ggatgcatca gagaaaataa aatggtatcg ttggtatctt
      361 ctggaaaaaa cacaaagtga aacctcagga aacacccatg aggtccatga atctggagat
      421 tacagatgcc aggcccagga ctcacccctg agtaatcgtg tgggcttgct cttttctcca
      481 gccaacctga tcctgcagtc tccacttgat gtgtttgaaa aagaatctgt tattctgaga
      541 tgccgagcaa aggcaaacac agtactgaaa actataaagc tgtacaagaa tggaaaagtc
      601 ctggaagatc acactgtgga gataccagtg ggaatgttga ctgacttcca tattcatcag
      661 gcaagtctga aggacaatgg caaatatcac tgtactggag ttaaggaaga taatgagttg
      721 gtttcttcaa actcggtcaa aatcgaagtc caagagctgt ttccacgtcc tgtgctgaga
      781 gccagctcca cccagcccac tgaaggagga gcagtgactc tgacctgtga gacccagctc
      841 tctccacaga ggccagatgt ccagctccag tttcacttct tcagagacag acggtccctg
      901 gggtcaggct ggagaagctc cccagaattc tggatccaca ccatatggag agaaaactca
      961 gggtcttact ggtgccaggc acagagcatg aatccctctg tccagaaaca gagccagaga
     1021 ttacagatac aggtgaaaat tccagtatct caccccgtcc tcaccctcag ggctcccagg
     1081 gcccaggctg tggtggggga cgtgatggag cttcactgtg aggcatggag aggctctccc
     1141 ccgatcttgt accggtttta tcatgaggat gtcagcctgg agagctgctc aagcccctct
     1201 gaaaggggag gttcctgcaa cctccttctg acagcagagc attctgggaa ctatttctgt
     1261 gaggccgaca atggccaggg gttccagcgc agtaacacag tgtcactcac tgtcagagtt
     1321 ccagtgtctc agcctgtcct cacactcagt gctccaaggg cccaggctgt ggtgggggac
     1381 atgatggagc ttcactgtga ggcatggaga ggctctcccc cgatcttgta ccggttttat
     1441 catgaggata tcagcctgga gagctgctca agcccctctg gaatgggagg ttcctgcaac
     1501 ctccttctga cagcagagca ttctgggaac tatttctgtg aggccaacaa tggccagggg
     1561 gcccagcgca gtaacacagt gtcactcact gtcagagttc cagtgtctca gcctgtcctc
     1621 acactcagtg ctccaagggc ccaggctgtg gtgggggaca tgatggagct tcactgtgag
     1681 gcatggagag gctctccccc gatcttgtac cggttttatc atgaggatgt cagcctggag
     1741 agctgctcaa gcccctctgg aatgggagct tcctgcaacc tccttctgac agcagagcat
     1801 tctgggaact atttctgtga ggccgacaat ggccaggggg cccagcgcag taacacagtg
     1861 ttactcactg tcagagttcc agtgtctcag cctgtcctca ccctcagggc tccaagggcc
     1921 caggctgtgg tgggggacat ggtagagctt cactgtgagg cccagggagg ctctcccccg
     1981 atcctgtacc agttttatca caaggatgtc gccgtgggaa accgctccgc tcccttggga
     2041 ggaggagcat ccttcaacct ctctctgacc acgaaacatt ctggaaacta ctcctgtaag
     2101 gccgacaatg gcctgggggt ccagcagagt gagatgatgc tactcagtgt catagttcca
     2161 gtgtctcgcc ctatcctcac cctcagggcc cccagggccc aggctgtggt gggggatgtg
     2221 gtggagcttc actgtgaggc ccagagaggc tctcccccga tcctgtacca gttttatcac
     2281 aagaatgtca ccctagagag cagcatgtcc cactctggac aaggagtgtc cctcaacctc
     2341 tcactgactg caaatcattc tggaacctac tcctgtgagg ccgacaatgg cctgggtccc
     2401 cagtgtagtg aggcagtgac actttccatc acagggctga cagggagcag aagtggccct
     2461 gttgccacca gtgtcaccgg ggggctgctc agcatgatgg gtctcgctgc catagcactg
     2521 ttgttctact gctggctccc gagaaaagca ggaagaaaac ctacatttga ttcctccagg
     2581 aacccgtcag cttcagaccc gcaagagccc acctaccaca atgtaccaag ctggatagaa
     2641 ctgcaaccag tgtacagcaa tgtaaatcct aacagaggag acgtggtgta ctcggacgtc
     2701 cggaccgtga aggtggagaa caaacaggca gcagcctctg acccagagct tctcaagaac
     2761 acggattcct gcgtcatcta ctcccaggtg aagggggctt acaccgcagc ccctaagccc
     2821 cagctcttgg ctgcatccac tcctcacaga tgagtccacg aagctcccga ctgctgtctc
     2881 agcctctgca cccaaagcca cccttggggg agaagggaca tcaaagtggg aagatttaaa
     2941 ccttgggtcc tagacccaag gccacaccca gcaacctgtg catcaagtgc ccacacccta
     3001 gtgtgaacag aacacagggc cccgcaggat tcccacctat ttccaaagtg acagccttgg
     3061 cccagtggtc tttttcttaa tgccatgtgc tcccaaccca gggcccatga tgttgcctgg
     3121 cttccttcat gaacttcagc tttggtcact attccaagtc ctactcccat acacatcccc
     3181 accattcctc catgaggact gcccctaaaa tctgccacgg ataacctgct ttcagtggtg
     3241 cttttctcag ttgcagtcag tctggtaagg ctacagtggg ctctgccaaa tgggacagca
     3301 cacacccgtg gagacatgga cactgggctc gtcatggacc tccccatgat gggactgcat
     3361 tccacactcc ccctgtctga aactctaagc tcagaatctg acaccaggat aactcctctc
     3421 ctgcccatgt gccaatatct acctgcccaa gtaagtggat ttcacaccct aggtcctaga
     3481 tccttcccac cctgccagaa gtaacccagg acagtcaagg ccaggaggac cagagatgca
     3541 gatagaatac atattgaaat ataggaggtg ctctattact atttgattga ttgaatgaat
     3601 gaataaatga ggaagatatt atgggtcatt atggtgtatt cctaccctca aactggcatc
     3661 tgatccagtg tgctccctag taaatccaag aagtactctt ttctcttccc tgagtaggaa
     3721 ataaactaag agaaggagtt tgagtgagga aagctatgtt cagaaagcag gaagccttct
     3781 caaactttaa agtgcttatg ta
//
LOCUS       XM_032609551            3686 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc receptor like 5 (FCRL5), transcript
            variant X2, mRNA.
ACCESSION   XM_032609551
VERSION     XM_032609551.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3686
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3686
                     /gene="FCRL5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742200"
     CDS             176..2737
                     /gene="FCRL5"
                     /codon_start=1
                     /product="Fc receptor-like protein 5 isoform X2"
                     /protein_id="XP_032465442.1"
                     /db_xref="GeneID:116742200"
                     /translation="MLLWVSLLVLAPVSGQFATEPKSVIFLHSPWTTVFQGENVTLTC
                     KAFHLDASEKIKWYRWYLLEKTQSETSGNTHEVHESGDYRCQAQDSPLSNRVGLLFSP
                     ANLILQSPLDVFEKESVILRCRAKANTVLKTIKLYKNGKVLEDHTVEIPVGMLTDFHI
                     HQASLKDNGKYHCTGVKEDNELVSSNSVKIEVQELFPRPVLRASSTQPTEGGAVTLTC
                     ETQLSPQRPDVQLQFHFFRDRRSLGSGWRSSPEFWIHTIWRENSGSYWCQAQSMNPSV
                     QKQSQRLQIQVKIPVSHPVLTLRAPRAQAVVGDVMELHCEAWRGSPPILYRFYHEDVS
                     LESCSSPSERGGSCNLLLTAEHSGNYFCEADNGQGFQRSNTVSLTVRVPVSQPVLTLS
                     APRAQAVVGDMMELHCEAWRGSPPILYRFYHEDISLESCSSPSGMGGSCNLLLTAEHS
                     GNYFCEANNGQGAQRSNTVSLTVRVPVSQPVLTLSAPRAQAVVGDMMELHCEAWRGSP
                     PILYRFYHEDVSLESCSSPSGMGASCNLLLTAEHSGNYFCEADNGQGAQRSNTVLLTV
                     RVPVSQPVLTLRAPRAQAVVGDMVELHCEAQGGSPPILYQFYHKDVAVGNRSAPLGGG
                     ASFNLSLTTKHSGNYSCKADNGLGVQQSEMMLLSVIVPVSRPILTLRAPRAQAVVGDV
                     VELHCEAQRGSPPILYQFYHKNVTLESSMSHSGQGVSLNLSLTANHSGTYSCEADNGL
                     GPQCSEAVTLSITGRKPTFDSSRNPSASDPQEPTYHNVPSWIELQPVYSNVNPNRGDV
                     VYSDVRTVKVENKQAAASDPELLKNTDSCVIYSQVKGAYTAAPKPQLLAASTPHR"
     misc_feature    242..475
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    293..307
                     /gene="FCRL5"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    335..349
                     /gene="FCRL5"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    377..391
                     /gene="FCRL5"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    419..436
                     /gene="FCRL5"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    452..463
                     /gene="FCRL5"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    488..751
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    530..544
                     /gene="FCRL5"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    572..586
                     /gene="FCRL5"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    611..655
                     /gene="FCRL5"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    683..700
                     /gene="FCRL5"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    728..739
                     /gene="FCRL5"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    767..1036
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1061..1315
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1331..1594
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1610..1873
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1892..2110
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    2177..2431
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
ORIGIN      
        1 attttccctc tttttattga agttttcctg tgtccatcca ttcttctccc cagctgtttc
       61 tcagatgtct tccttggggc tactgtgaca gtgtacaact gtaagatcaa ggccaaacct
      121 ggtattcctg agaaaacctc tcttttgttc tcagccctgg gcaggccaag tcttcatgct
      181 gctgtgggta tcactgctgg tcctggctcc tgtcagtgga caatttgcaa ctgaaccaaa
      241 atctgtaatt ttcctccatt ctccatggac cactgtcttc caaggagaga atgtgacact
      301 gacttgcaaa gcatttcact tggatgcatc agagaaaata aaatggtatc gttggtatct
      361 tctggaaaaa acacaaagtg aaacctcagg aaacacccat gaggtccatg aatctggaga
      421 ttacagatgc caggcccagg actcacccct gagtaatcgt gtgggcttgc tcttttctcc
      481 agccaacctg atcctgcagt ctccacttga tgtgtttgaa aaagaatctg ttattctgag
      541 atgccgagca aaggcaaaca cagtactgaa aactataaag ctgtacaaga atggaaaagt
      601 cctggaagat cacactgtgg agataccagt gggaatgttg actgacttcc atattcatca
      661 ggcaagtctg aaggacaatg gcaaatatca ctgtactgga gttaaggaag ataatgagtt
      721 ggtttcttca aactcggtca aaatcgaagt ccaagagctg tttccacgtc ctgtgctgag
      781 agccagctcc acccagccca ctgaaggagg agcagtgact ctgacctgtg agacccagct
      841 ctctccacag aggccagatg tccagctcca gtttcacttc ttcagagaca gacggtccct
      901 ggggtcaggc tggagaagct ccccagaatt ctggatccac accatatgga gagaaaactc
      961 agggtcttac tggtgccagg cacagagcat gaatccctct gtccagaaac agagccagag
     1021 attacagata caggtgaaaa ttccagtatc tcaccccgtc ctcaccctca gggctcccag
     1081 ggcccaggct gtggtggggg acgtgatgga gcttcactgt gaggcatgga gaggctctcc
     1141 cccgatcttg taccggtttt atcatgagga tgtcagcctg gagagctgct caagcccctc
     1201 tgaaagggga ggttcctgca acctccttct gacagcagag cattctggga actatttctg
     1261 tgaggccgac aatggccagg ggttccagcg cagtaacaca gtgtcactca ctgtcagagt
     1321 tccagtgtct cagcctgtcc tcacactcag tgctccaagg gcccaggctg tggtggggga
     1381 catgatggag cttcactgtg aggcatggag aggctctccc ccgatcttgt accggtttta
     1441 tcatgaggat atcagcctgg agagctgctc aagcccctct ggaatgggag gttcctgcaa
     1501 cctccttctg acagcagagc attctgggaa ctatttctgt gaggccaaca atggccaggg
     1561 ggcccagcgc agtaacacag tgtcactcac tgtcagagtt ccagtgtctc agcctgtcct
     1621 cacactcagt gctccaaggg cccaggctgt ggtgggggac atgatggagc ttcactgtga
     1681 ggcatggaga ggctctcccc cgatcttgta ccggttttat catgaggatg tcagcctgga
     1741 gagctgctca agcccctctg gaatgggagc ttcctgcaac ctccttctga cagcagagca
     1801 ttctgggaac tatttctgtg aggccgacaa tggccagggg gcccagcgca gtaacacagt
     1861 gttactcact gtcagagttc cagtgtctca gcctgtcctc accctcaggg ctccaagggc
     1921 ccaggctgtg gtgggggaca tggtagagct tcactgtgag gcccagggag gctctccccc
     1981 gatcctgtac cagttttatc acaaggatgt cgccgtggga aaccgctccg ctcccttggg
     2041 aggaggagca tccttcaacc tctctctgac cacgaaacat tctggaaact actcctgtaa
     2101 ggccgacaat ggcctggggg tccagcagag tgagatgatg ctactcagtg tcatagttcc
     2161 agtgtctcgc cctatcctca ccctcagggc ccccagggcc caggctgtgg tgggggatgt
     2221 ggtggagctt cactgtgagg cccagagagg ctctcccccg atcctgtacc agttttatca
     2281 caagaatgtc accctagaga gcagcatgtc ccactctgga caaggagtgt ccctcaacct
     2341 ctcactgact gcaaatcatt ctggaaccta ctcctgtgag gccgacaatg gcctgggtcc
     2401 ccagtgtagt gaggcagtga cactttccat cacaggaaga aaacctacat ttgattcctc
     2461 caggaacccg tcagcttcag acccgcaaga gcccacctac cacaatgtac caagctggat
     2521 agaactgcaa ccagtgtaca gcaatgtaaa tcctaacaga ggagacgtgg tgtactcgga
     2581 cgtccggacc gtgaaggtgg agaacaaaca ggcagcagcc tctgacccag agcttctcaa
     2641 gaacacggat tcctgcgtca tctactccca ggtgaagggg gcttacaccg cagcccctaa
     2701 gccccagctc ttggctgcat ccactcctca cagatgagtc cacgaagctc ccgactgctg
     2761 tctcagcctc tgcacccaaa gccacccttg ggggagaagg gacatcaaag tgggaagatt
     2821 taaaccttgg gtcctagacc caaggccaca cccagcaacc tgtgcatcaa gtgcccacac
     2881 cctagtgtga acagaacaca gggccccgca ggattcccac ctatttccaa agtgacagcc
     2941 ttggcccagt ggtctttttc ttaatgccat gtgctcccaa cccagggccc atgatgttgc
     3001 ctggcttcct tcatgaactt cagctttggt cactattcca agtcctactc ccatacacat
     3061 ccccaccatt cctccatgag gactgcccct aaaatctgcc acggataacc tgctttcagt
     3121 ggtgcttttc tcagttgcag tcagtctggt aaggctacag tgggctctgc caaatgggac
     3181 agcacacacc cgtggagaca tggacactgg gctcgtcatg gacctcccca tgatgggact
     3241 gcattccaca ctccccctgt ctgaaactct aagctcagaa tctgacacca ggataactcc
     3301 tctcctgccc atgtgccaat atctacctgc ccaagtaagt ggatttcaca ccctaggtcc
     3361 tagatccttc ccaccctgcc agaagtaacc caggacagtc aaggccagga ggaccagaga
     3421 tgcagataga atacatattg aaatatagga ggtgctctat tactatttga ttgattgaat
     3481 gaatgaataa atgaggaaga tattatgggt cattatggtg tattcctacc ctcaaactgg
     3541 catctgatcc agtgtgctcc ctagtaaatc caagaagtac tcttttctct tccctgagta
     3601 ggaaataaac taagagaagg agtttgagtg aggaaagcta tgttcagaaa gcaggaagcc
     3661 ttctcaaact ttaaagtgct tatgta
//
LOCUS       XM_032609557            3533 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc receptor like 5 (FCRL5), transcript
            variant X3, mRNA.
ACCESSION   XM_032609557
VERSION     XM_032609557.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3533
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3533
                     /gene="FCRL5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742200"
     CDS             185..2584
                     /gene="FCRL5"
                     /codon_start=1
                     /product="Fc receptor-like protein 5 isoform X3"
                     /protein_id="XP_032465448.1"
                     /db_xref="GeneID:116742200"
                     /translation="MLLWVSLLVLAPVSGQFATEPKSVIFLHSPWTTVFQGENVTLTC
                     KAFHLDASEKIKWYRWYLLEKTQSETSGNTHEVHESGDYRCQAQDSPLSNRVGLLFSP
                     ANLILQSPLDVFEKESVILRCRAKANTVLKTIKLYKNGKVLEDHTVEIPVGMLTDFHI
                     HQASLKDNGKYHCTGVKEDNELVSSNSVKIEVQELFPRPVLRASSTQPTEGGAVTLTC
                     ETQLSPQRPDVQLQFHFFRDRRSLGSGWRSSPEFWIHTIWRENSGSYWCQAQSMNPSV
                     QKQSQRLQIQVKIPVSHPVLTLRAPRAQAVVGDVMELHCEAWRGSPPILYRFYHEDVS
                     LESCSSPSERGGSCNLLLTAEHSGNYFCEADNGQGFQRSNTVSLTVRVPVSQPVLTLS
                     APRAQAVVGDMMELHCEAWRGSPPILYRFYHEDISLESCSSPSGMGGSCNLLLTAEHS
                     GNYFCEANNGQGAQRSNTVSLTVRVPVSQPVLTLRAPRAQAVVGDMVELHCEAQGGSP
                     PILYQFYHKDVAVGNRSAPLGGGASFNLSLTTKHSGNYSCKADNGLGVQQSEMMLLSV
                     IVPVSRPILTLRAPRAQAVVGDVVELHCEAQRGSPPILYQFYHKNVTLESSMSHSGQG
                     VSLNLSLTANHSGTYSCEADNGLGPQCSEAVTLSITGLTGSRSGPVATSVTGGLLSMM
                     GLAAIALLFYCWLPRKAGRKPTFDSSRNPSASDPQEPTYHNVPSWIELQPVYSNVNPN
                     RGDVVYSDVRTVKVENKQAAASDPELLKNTDSCVIYSQVKGAYTAAPKPQLLAASTPH
                     R"
     misc_feature    251..484
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    302..316
                     /gene="FCRL5"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    344..358
                     /gene="FCRL5"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    386..400
                     /gene="FCRL5"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    428..445
                     /gene="FCRL5"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    461..472
                     /gene="FCRL5"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    497..760
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    539..553
                     /gene="FCRL5"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    581..595
                     /gene="FCRL5"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    620..664
                     /gene="FCRL5"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    692..709
                     /gene="FCRL5"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    737..748
                     /gene="FCRL5"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    776..1045
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1070..1324
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1340..1603
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1622..1840
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
     misc_feature    1907..2161
                     /gene="FCRL5"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
ORIGIN      
        1 ctttctcata ttttccctct ttttattgaa gttttcctgt gtccatccat tcttctcccc
       61 agctgtttct cagatgtctt ccttggggct actgtgacag tgtacaactg taagatcaag
      121 gccaaacctg gtattcctga gaaaacctct cttttgttct cagccctggg caggccaagt
      181 cttcatgctg ctgtgggtat cactgctggt cctggctcct gtcagtggac aatttgcaac
      241 tgaaccaaaa tctgtaattt tcctccattc tccatggacc actgtcttcc aaggagagaa
      301 tgtgacactg acttgcaaag catttcactt ggatgcatca gagaaaataa aatggtatcg
      361 ttggtatctt ctggaaaaaa cacaaagtga aacctcagga aacacccatg aggtccatga
      421 atctggagat tacagatgcc aggcccagga ctcacccctg agtaatcgtg tgggcttgct
      481 cttttctcca gccaacctga tcctgcagtc tccacttgat gtgtttgaaa aagaatctgt
      541 tattctgaga tgccgagcaa aggcaaacac agtactgaaa actataaagc tgtacaagaa
      601 tggaaaagtc ctggaagatc acactgtgga gataccagtg ggaatgttga ctgacttcca
      661 tattcatcag gcaagtctga aggacaatgg caaatatcac tgtactggag ttaaggaaga
      721 taatgagttg gtttcttcaa actcggtcaa aatcgaagtc caagagctgt ttccacgtcc
      781 tgtgctgaga gccagctcca cccagcccac tgaaggagga gcagtgactc tgacctgtga
      841 gacccagctc tctccacaga ggccagatgt ccagctccag tttcacttct tcagagacag
      901 acggtccctg gggtcaggct ggagaagctc cccagaattc tggatccaca ccatatggag
      961 agaaaactca gggtcttact ggtgccaggc acagagcatg aatccctctg tccagaaaca
     1021 gagccagaga ttacagatac aggtgaaaat tccagtatct caccccgtcc tcaccctcag
     1081 ggctcccagg gcccaggctg tggtggggga cgtgatggag cttcactgtg aggcatggag
     1141 aggctctccc ccgatcttgt accggtttta tcatgaggat gtcagcctgg agagctgctc
     1201 aagcccctct gaaaggggag gttcctgcaa cctccttctg acagcagagc attctgggaa
     1261 ctatttctgt gaggccgaca atggccaggg gttccagcgc agtaacacag tgtcactcac
     1321 tgtcagagtt ccagtgtctc agcctgtcct cacactcagt gctccaaggg cccaggctgt
     1381 ggtgggggac atgatggagc ttcactgtga ggcatggaga ggctctcccc cgatcttgta
     1441 ccggttttat catgaggata tcagcctgga gagctgctca agcccctctg gaatgggagg
     1501 ttcctgcaac ctccttctga cagcagagca ttctgggaac tatttctgtg aggccaacaa
     1561 tggccagggg gcccagcgca gtaacacagt gtcactcact gtcagagttc cagtgtctca
     1621 gcctgtcctc accctcaggg ctccaagggc ccaggctgtg gtgggggaca tggtagagct
     1681 tcactgtgag gcccagggag gctctccccc gatcctgtac cagttttatc acaaggatgt
     1741 cgccgtggga aaccgctccg ctcccttggg aggaggagca tccttcaacc tctctctgac
     1801 cacgaaacat tctggaaact actcctgtaa ggccgacaat ggcctggggg tccagcagag
     1861 tgagatgatg ctactcagtg tcatagttcc agtgtctcgc cctatcctca ccctcagggc
     1921 ccccagggcc caggctgtgg tgggggatgt ggtggagctt cactgtgagg cccagagagg
     1981 ctctcccccg atcctgtacc agttttatca caagaatgtc accctagaga gcagcatgtc
     2041 ccactctgga caaggagtgt ccctcaacct ctcactgact gcaaatcatt ctggaaccta
     2101 ctcctgtgag gccgacaatg gcctgggtcc ccagtgtagt gaggcagtga cactttccat
     2161 cacagggctg acagggagca gaagtggccc tgttgccacc agtgtcaccg gggggctgct
     2221 cagcatgatg ggtctcgctg ccatagcact gttgttctac tgctggctcc cgagaaaagc
     2281 aggaagaaaa cctacatttg attcctccag gaacccgtca gcttcagacc cgcaagagcc
     2341 cacctaccac aatgtaccaa gctggataga actgcaacca gtgtacagca atgtaaatcc
     2401 taacagagga gacgtggtgt actcggacgt ccggaccgtg aaggtggaga acaaacaggc
     2461 agcagcctct gacccagagc ttctcaagaa cacggattcc tgcgtcatct actcccaggt
     2521 gaagggggct tacaccgcag cccctaagcc ccagctcttg gctgcatcca ctcctcacag
     2581 atgagtccac gaagctcccg actgctgtct cagcctctgc acccaaagcc acccttgggg
     2641 gagaagggac atcaaagtgg gaagatttaa accttgggtc ctagacccaa ggccacaccc
     2701 agcaacctgt gcatcaagtg cccacaccct agtgtgaaca gaacacaggg ccccgcagga
     2761 ttcccaccta tttccaaagt gacagccttg gcccagtggt ctttttctta atgccatgtg
     2821 ctcccaaccc agggcccatg atgttgcctg gcttccttca tgaacttcag ctttggtcac
     2881 tattccaagt cctactccca tacacatccc caccattcct ccatgaggac tgcccctaaa
     2941 atctgccacg gataacctgc tttcagtggt gcttttctca gttgcagtca gtctggtaag
     3001 gctacagtgg gctctgccaa atgggacagc acacacccgt ggagacatgg acactgggct
     3061 cgtcatggac ctccccatga tgggactgca ttccacactc cccctgtctg aaactctaag
     3121 ctcagaatct gacaccagga taactcctct cctgcccatg tgccaatatc tacctgccca
     3181 agtaagtgga tttcacaccc taggtcctag atccttccca ccctgccaga agtaacccag
     3241 gacagtcaag gccaggagga ccagagatgc agatagaata catattgaaa tataggaggt
     3301 gctctattac tatttgattg attgaatgaa tgaataaatg aggaagatat tatgggtcat
     3361 tatggtgtat tcctaccctc aaactggcat ctgatccagt gtgctcccta gtaaatccaa
     3421 gaagtactct tttctcttcc ctgagtagga aataaactaa gagaaggagt ttgagtgagg
     3481 aaagctatgt tcagaaagca ggaagccttc tcaaacttta aagtgcttat gta
//
LOCUS       XM_032609561            3128 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc receptor like 4 (FCRL4), transcript
            variant X1, mRNA.
ACCESSION   XM_032609561
VERSION     XM_032609561.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3128
                     /gene="FCRL4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742212"
     CDS             62..1663
                     /gene="FCRL4"
                     /codon_start=1
                     /product="Fc receptor-like protein 4 isoform X1"
                     /protein_id="XP_032465452.1"
                     /db_xref="GeneID:116742212"
                     /translation="MLLRTPEQTSMLLWASLLVLAAPVSGPLATVPKSMISLQPPWTT
                     VFRGERVNLTCNGFHFYAPEKIKWYRLYSGRQRPSETQGNTLEVRDSGQYICQAPGSL
                     PSNPVHLLFSTASFILQAPHSVFEGDELILRCRNRGREKLTTLRYFWNRKVISDSNKI
                     LDLLISRASLNNSGCYQCTGSLENNRVLRTSLTNIRIQELFPRPKLKVTDSQPTEGNS
                     VNLSCKTQLPLERSDTRLRFVFFRDHGVILSNWSASPELQVTAIWREDSGSYWCGAMT
                     SGIHKRSLPLQIDVQRIPVSGVFLETQPQGDPVVEGEILVLVCSVAEGTGNTTFSWHR
                     EDTRESLGQKSQRSQRAELEIAVIRESHAGGYYCTADNGYGLIQSEAVNVSVRSTPGK
                     RRGLVAAGTTGGTFSVLLAVALLFYCWYQRKLGDGSLGDTTRRPLTLGPGVSFHPMCP
                     APVELQQLYGNVHPKERDLVYSQIQIIQPGEQGEGNTFRTSLEDQHASIVYSEVKTQL
                     RDDSAVKVGSKDEDIVENYKDVLLM"
     misc_feature    161..394
                     /gene="FCRL4"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    212..226
                     /gene="FCRL4"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    254..268
                     /gene="FCRL4"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    305..316
                     /gene="FCRL4"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    338..355
                     /gene="FCRL4"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    371..382
                     /gene="FCRL4"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    410..>601
                     /gene="FCRL4"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    449..463
                     /gene="FCRL4"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    491..505
                     /gene="FCRL4"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    542..556
                     /gene="FCRL4"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    584..601
                     /gene="FCRL4"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    668..931
                     /gene="FCRL4"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    986..1219
                     /gene="FCRL4"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    1004..1018
                     /gene="FCRL4"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1046..1060
                     /gene="FCRL4"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1112..1126
                     /gene="FCRL4"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1154..1171
                     /gene="FCRL4"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1196..1207
                     /gene="FCRL4"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 tcagaggaac aacttgctga actcactctc cagcgctggg aactggcctg tctcctatga
       61 gatgctcctc aggaccccag agcagacttc catgctactg tgggcatcct tgctggtcct
      121 cgcagctcca gtcagtggac cacttgctac tgtacccaaa tccatgattt ccctccagcc
      181 tccgtggacc actgtcttcc gtggagagag agtgaatctg acttgcaatg gatttcactt
      241 ctatgcacca gagaaaataa aatggtaccg tttgtactct ggaagacaac gtccaagtga
      301 aacccaagga aacaccctcg aggttcgtga ttctggacag tacatttgcc aggccccagg
      361 ctcactcccg agtaaccctg tgcacttgct cttttctaca gcctccttca tcctccaggc
      421 cccacattct gtgtttgaag gtgacgagtt gattctgaga tgccggaata gggggagaga
      481 gaaactgact actctgaggt acttttggaa tagaaaagtt atttctgatt ctaataaaat
      541 cttggatctt ctgatatcac gtgcaagttt aaacaacagt ggctgttacc aatgcactgg
      601 atccttggaa aacaatcgtg tattgagaac aagtctcaca aatattcgaa ttcaagagct
      661 atttccacgt ccaaagctga aagtcacaga ctcccagcct acagagggga attctgtaaa
      721 cctgagctgt aaaacacagc ttcctctaga gcggtcggac actcggcttc gctttgtctt
      781 cttcagagac catggggtca tcctctcaaa ctggagtgcg tccccagaac tccaggtcac
      841 agccatctgg agagaagact caggatcata ctggtgtggg gccatgacca gcggcatcca
      901 caaacgcagc cttccacttc agattgacgt gcagagaatc cccgtgtctg gagtgttcct
      961 ggagacccag ccccaggggg acccggtggt ggaaggggag atacttgtcc ttgtctgctc
     1021 tgtggctgag ggcacgggga acaccacgtt ctcctggcac agagaggaca ccagggagag
     1081 tctggggcag aaaagtcagc gctcccagag agcagagctg gagatcgctg ttatcaggga
     1141 gagccacgca gggggctact actgcacagc tgacaatggc tacggcctca tccagagcga
     1201 ggcggtgaac gtctctgtga gaagcacccc agggaaaaga agaggccttg ttgccgcggg
     1261 aaccactggg gggacattca gcgttctcct ggctgtggcc ctgctgtttt actgctggta
     1321 ccagaggaaa ctaggagatg gctctctggg agacacaacc aggagacccc tgaccctagg
     1381 cccaggagtg tccttccatc ccatgtgccc tgccccagtg gagctgcagc agttgtatgg
     1441 caatgtgcac cccaaagaaa gagacctggt atattctcag atccagatta tccagcctgg
     1501 ggaacaagga gaaggaaata ccttcagaac atctctagag gaccagcatg cctcaattgt
     1561 ctactctgag gtgaagacac agctccgaga tgattcagct gtaaaggtcg gctctaaaga
     1621 tgaagatatc gtggaaaatt acaaggatgt cctactcatg tgacttgtcc atgatcccaa
     1681 gacccagctg agtgcagtcc ttgaggtctc tagagtgacc aactagttcc aactttccgg
     1741 ttcttcttgc ccatgtgcat tcactcccag gacttctgat tcacccactc tgatgccgtg
     1801 atgggaaagc ccctcaaaga cgtcactgaa atgaccaggg tccatggtta aaaaaagagc
     1861 ctgtgtacct gctctgagcc taacctaatg tgttccctag ggtgtgattt aggggaaagg
     1921 aataaggggg gagaaggact gctgctgaaa aacagaagca taaattttgg agaactggga
     1981 tttgcatcta gacagaaagg accaagtgac tcaggtctct gtttaataca tcttcaacaa
     2041 ttctcccact ggggaatcag ctgcatcaat tagtttcact atgagtggct gcatgtgtac
     2101 tttacaggta atgcataacc ccatccctcc tgcttacact gtttacactg tcaagattca
     2161 gttgcaggca gaagaatcca ttccaagtgg tttactgata aaggaattta agtttatatt
     2221 aactactttg aaaaatcatt agaagacctg aagaagcagg ctctagactg agtttccaaa
     2281 agcaaaagct aattacgtta atgttattag ggacaaagat ttttaacatt ggagacaaga
     2341 aatataaaat taaaaagtta agtaggtaac tttaagtaac ccccaaaacc taaatttgaa
     2401 ttggaaatgt tagtacaaac tgatgacaaa ccctgtcttt tttttttcaa accctgcctt
     2461 ttaaaaaaat tatttatttc ctagttctgt ccactggaaa tgtctagaaa taattaacaa
     2521 ctcaataaca atgagcaccc attgcacatg ttgtagtctc taaatactat tccctactca
     2581 aaggatacag agctgccttt cttgtaggag ctgtatcttt gagttatcaa aaaggtgatg
     2641 ttagaataat tcttccaatg gatgaagaaa gactgaaaga aacagaaaac gactattttg
     2701 tgtgaacgtt tcatgctact gatcaagttg acatacaaaa accagcctaa tattatgtgc
     2761 ctcctgatgg aagtatccaa taccgcctac aaagtattta tgcctgaaat atcgaaactg
     2821 aatccactca agtcgctagg tctaactacc cagtttacag gaaataaatg ggacaaagga
     2881 ctatgttaaa tagcaccatg ggattgcaat cagaaaaatc taaactatgg aaaaatccta
     2941 caggacaaat gacctggttt cttcaacaaa caaatgactg aaggaaagaa ggaaggaagg
     3001 aaagagggaa gacctataaa ttaaatgaga cttgagacat gtcagtcaaa aagaataagt
     3061 gaggttggac tcaaacaaat taagttaaaa aggaattact tatggaatac taaatgaaat
     3121 ttttacat
//
LOCUS       XM_032609566            3156 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc receptor like 4 (FCRL4), transcript
            variant X2, mRNA.
ACCESSION   XM_032609566
VERSION     XM_032609566.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3156
                     /gene="FCRL4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742212"
     CDS             62..1597
                     /gene="FCRL4"
                     /codon_start=1
                     /product="Fc receptor-like protein 4 isoform X2"
                     /protein_id="XP_032465457.1"
                     /db_xref="GeneID:116742212"
                     /translation="MLLRTPEQTSMLLWASLLVLAAPVSGPLATVPKSMISLQPPWTT
                     VFRGERVNLTCNGFHFYAPEKIKWYRLYSGRQRPSETQGNTLEVRDSGQYICQAPGSL
                     PSNPVHLLFSTASFILQAPHSVFEGDELILRCRNRGREKLTTLRYFWNRKVISDSNKI
                     LDLLISRASLNNSGCYQCTGSLENNRVLRTSLTNIRIQELFPRPKLKVTDSQPTEGNS
                     VNLSCKTQLPLERSDTRLRFVFFRDHGVILSNWSASPELQVTAIWREDSGSYWCGAMT
                     SGIHKRSLPLQIDVQRIPVSGVFLETQPQGDPVVEGEILVLVCSVAEGTGNTTFSWHR
                     EDTRESLGQKSQRSQRAELEIAVIRESHAGGYYCTADNGYGLIQSEAVNVSVRSTPGK
                     RRGLVAAGTTGGTFSVLLAVALLFYCWYQRKLGDGSLGDTTRRPLTLGPGVSFHPMCP
                     APVELQQLYGNVHPKERDLVYSQIQIIQPGEQGEGNTFRTSLEDQFFFYLFSTPACLN
                     CLL"
     misc_feature    161..394
                     /gene="FCRL4"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    212..226
                     /gene="FCRL4"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    254..268
                     /gene="FCRL4"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    305..316
                     /gene="FCRL4"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    338..355
                     /gene="FCRL4"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    371..382
                     /gene="FCRL4"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    410..>601
                     /gene="FCRL4"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    449..463
                     /gene="FCRL4"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    491..505
                     /gene="FCRL4"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    542..556
                     /gene="FCRL4"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    584..601
                     /gene="FCRL4"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    668..931
                     /gene="FCRL4"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    986..1219
                     /gene="FCRL4"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    1004..1018
                     /gene="FCRL4"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1046..1060
                     /gene="FCRL4"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1112..1126
                     /gene="FCRL4"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1154..1171
                     /gene="FCRL4"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1196..1207
                     /gene="FCRL4"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 tcagaggaac aacttgctga actcactctc cagcgctggg aactggcctg tctcctatga
       61 gatgctcctc aggaccccag agcagacttc catgctactg tgggcatcct tgctggtcct
      121 cgcagctcca gtcagtggac cacttgctac tgtacccaaa tccatgattt ccctccagcc
      181 tccgtggacc actgtcttcc gtggagagag agtgaatctg acttgcaatg gatttcactt
      241 ctatgcacca gagaaaataa aatggtaccg tttgtactct ggaagacaac gtccaagtga
      301 aacccaagga aacaccctcg aggttcgtga ttctggacag tacatttgcc aggccccagg
      361 ctcactcccg agtaaccctg tgcacttgct cttttctaca gcctccttca tcctccaggc
      421 cccacattct gtgtttgaag gtgacgagtt gattctgaga tgccggaata gggggagaga
      481 gaaactgact actctgaggt acttttggaa tagaaaagtt atttctgatt ctaataaaat
      541 cttggatctt ctgatatcac gtgcaagttt aaacaacagt ggctgttacc aatgcactgg
      601 atccttggaa aacaatcgtg tattgagaac aagtctcaca aatattcgaa ttcaagagct
      661 atttccacgt ccaaagctga aagtcacaga ctcccagcct acagagggga attctgtaaa
      721 cctgagctgt aaaacacagc ttcctctaga gcggtcggac actcggcttc gctttgtctt
      781 cttcagagac catggggtca tcctctcaaa ctggagtgcg tccccagaac tccaggtcac
      841 agccatctgg agagaagact caggatcata ctggtgtggg gccatgacca gcggcatcca
      901 caaacgcagc cttccacttc agattgacgt gcagagaatc cccgtgtctg gagtgttcct
      961 ggagacccag ccccaggggg acccggtggt ggaaggggag atacttgtcc ttgtctgctc
     1021 tgtggctgag ggcacgggga acaccacgtt ctcctggcac agagaggaca ccagggagag
     1081 tctggggcag aaaagtcagc gctcccagag agcagagctg gagatcgctg ttatcaggga
     1141 gagccacgca gggggctact actgcacagc tgacaatggc tacggcctca tccagagcga
     1201 ggcggtgaac gtctctgtga gaagcacccc agggaaaaga agaggccttg ttgccgcggg
     1261 aaccactggg gggacattca gcgttctcct ggctgtggcc ctgctgtttt actgctggta
     1321 ccagaggaaa ctaggagatg gctctctggg agacacaacc aggagacccc tgaccctagg
     1381 cccaggagtg tccttccatc ccatgtgccc tgccccagtg gagctgcagc agttgtatgg
     1441 caatgtgcac cccaaagaaa gagacctggt atattctcag atccagatta tccagcctgg
     1501 ggaacaagga gaaggaaata ccttcagaac atctctagag gaccagttct tcttctacct
     1561 tttttccacc ccagcatgcc tcaattgtct actctgaggt gaagacacag ctccgagatg
     1621 attcagctgt aaaggtcggc tctaaagatg aagatatcgt ggaaaattac aaggatgtcc
     1681 tactcatgtg acttgtccat gatcccaaga cccagctgag tgcagtcctt gaggtctcta
     1741 gagtgaccaa ctagttccaa ctttccggtt cttcttgccc atgtgcattc actcccagga
     1801 cttctgattc acccactctg atgccgtgat gggaaagccc ctcaaagacg tcactgaaat
     1861 gaccagggtc catggttaaa aaaagagcct gtgtacctgc tctgagccta acctaatgtg
     1921 ttccctaggg tgtgatttag gggaaaggaa taagggggga gaaggactgc tgctgaaaaa
     1981 cagaagcata aattttggag aactgggatt tgcatctaga cagaaaggac caagtgactc
     2041 aggtctctgt ttaatacatc ttcaacaatt ctcccactgg ggaatcagct gcatcaatta
     2101 gtttcactat gagtggctgc atgtgtactt tacaggtaat gcataacccc atccctcctg
     2161 cttacactgt ttacactgtc aagattcagt tgcaggcaga agaatccatt ccaagtggtt
     2221 tactgataaa ggaatttaag tttatattaa ctactttgaa aaatcattag aagacctgaa
     2281 gaagcaggct ctagactgag tttccaaaag caaaagctaa ttacgttaat gttattaggg
     2341 acaaagattt ttaacattgg agacaagaaa tataaaatta aaaagttaag taggtaactt
     2401 taagtaaccc ccaaaaccta aatttgaatt ggaaatgtta gtacaaactg atgacaaacc
     2461 ctgtcttttt tttttcaaac cctgcctttt aaaaaaatta tttatttcct agttctgtcc
     2521 actggaaatg tctagaaata attaacaact caataacaat gagcacccat tgcacatgtt
     2581 gtagtctcta aatactattc cctactcaaa ggatacagag ctgcctttct tgtaggagct
     2641 gtatctttga gttatcaaaa aggtgatgtt agaataattc ttccaatgga tgaagaaaga
     2701 ctgaaagaaa cagaaaacga ctattttgtg tgaacgtttc atgctactga tcaagttgac
     2761 atacaaaaac cagcctaata ttatgtgcct cctgatggaa gtatccaata ccgcctacaa
     2821 agtatttatg cctgaaatat cgaaactgaa tccactcaag tcgctaggtc taactaccca
     2881 gtttacagga aataaatggg acaaaggact atgttaaata gcaccatggg attgcaatca
     2941 gaaaaatcta aactatggaa aaatcctaca ggacaaatga cctggtttct tcaacaaaca
     3001 aatgactgaa ggaaagaagg aaggaaggaa agagggaaga cctataaatt aaatgagact
     3061 tgagacatgt cagtcaaaaa gaataagtga ggttggactc aaacaaatta agttaaaaag
     3121 gaattactta tggaatacta aatgaaattt ttacat
//
LOCUS       XM_032609570            3753 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PHD finger protein 13 (PHF13), mRNA.
ACCESSION   XM_032609570
VERSION     XM_032609570.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-398               VOSU01000011.1     4768600-4768997
            399-500             VOSU01000011.1     4771378-4771479
            501-746             VOSU01000011.1     4772893-4773138
            747-794             VOSU01000011.1     4773140-4773187
            795-911             VOSU01000011.1     4773189-4773305
            912-1035            VOSU01000011.1     4773307-4773430
            1036-3753           VOSU01000011.1     4773885-4776602
FEATURES             Location/Qualifiers
     source          1..3753
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3753
                     /gene="PHF13"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 3 bases in 3 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 long SRA reads, 9 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742230"
     CDS             360..1442
                     /gene="PHF13"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 3 bases in 3 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: PHD finger protein 13"
                     /protein_id="XP_032465461.1"
                     /db_xref="GeneID:116742230"
                     /translation="MDSDSCAAAFHPEEYSPSSKRRRTVEDFNKFCTFVLAYAGYIPY
                     PKEELPLRSSPSPANSTAGTIDSDGWEAGFSDISSTVPLPVSDRCFGHLQPTLLQRAK
                     PSNFLLDRKKTDKLKKKKKRKRRDSDVPGKEGYMGGLLQLEAADPYAETPTSPTLQDI
                     PQAPGDPCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGTM
                     RTSWWDSDDDSWDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVLPK
                     VPDSKFDIRRSNRSRMGSREAVSGLDCWRASRLWARNRKGRWALLALVLVEHRTLSSG
                     AGRPLPFRCLSERTSCPRYKLYIASD"
     misc_feature    1053..1187
                     /gene="PHF13"
                     /note="PHD finger found in PHD finger protein 13 (PHF13);
                     Region: PHD_PHF13; cd15632"
                     /db_xref="CDD:277102"
     misc_feature    order(1080..1082,1086..1103,1122..1124,1152..1154,
                     1161..1169)
                     /gene="PHF13"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:277102"
ORIGIN      
        1 tcgcggctcc gccctccctc cggagacacg agccgaactg ggcgtcaggt cggggagccg
       61 gtcgggttcc cgctcgccgc cgccgccgcc ccctccgcat cgactctccc gcctctccag
      121 tcgcgctggt cgcgggagct gcatcgacaa ctctgctcgg ctgtggagcc gccggcccga
      181 gagtacagtg cccgggacgc gacacaccga gcccctcatc atctccagtc ggggcgaccc
      241 ctcccgagtc cgccctcgcc ctacgcggcc gccggagccc ccggccccga gcggccccgc
      301 ggcccggcgc ccgcagctcg gcccctgcac tgccgctgtc gccgcccccc accctgaaca
      361 tggactccga ctcctgcgcc gccgctttcc acccggagga gtactccccc agttccaaga
      421 ggcgcaggac cgtggaggat ttcaacaagt tctgcacctt tgtcttggcc tatgcaggct
      481 acatccctta tccaaaggag gaactccctt tgaggagcag ccccagccct gctaatagca
      541 ctgctggtac cattgacagt gatggctggg aggctggttt cagcgacatc tcgtccaccg
      601 tgcccttgcc agtctctgac cgctgctttg gccacctgca gcccaccctc ctgcagcgag
      661 ccaagcccag taatttcctg ctggacagaa agaagaccga caagctgaag aagaagaaga
      721 agaggaagcg aagggacagt gacgttcccg ggaaggaggg ctacatgggg ggtttgctgc
      781 agctggaagc tgccgaccca tatgcagaga cccccacgag ccctaccctg caggatatcc
      841 cccaggcccc cggcgaccct tgttcgggct gggactccga cactccttcc agtggatctt
      901 gtgccacggt ctcaccggat caggtcaaag agataaagac tgaaggcaaa cggactatcg
      961 tccggcaggg caagcaggtg gtgttccggg atgaggacag caccggcacg atgaggacat
     1021 catggtggga ttcagacgac gactcctggg acctcgtcac ctgcttctgc atgaagccat
     1081 ttgctggccg ccccatgata gagtgtaatg agtgccatac ctggattcac ctgtcctgtg
     1141 cgaaaatccg gaagtccaac gttccggaag tgtttgttct gccaaaagtg ccggactcca
     1201 agtttgacat ccgccgttcc aaccggtccc gaatgggctc ccgagaagct gtttctggac
     1261 tggactgctg gagagcaagc agactgtggg cgaggaatcg gaagggacga tgggccctgc
     1321 tggccctggt cttagttgag cacagaactc tcagctctgg tgcgggcaga cccctgccat
     1381 tcaggtgcct aagcgaaagg accagctgtc caaggtataa actgtacata gccagtgact
     1441 gaataaaatc ctcgttggcc aaagctgctg ctagagctgt gttctctgca gtggaggtgg
     1501 actacacacc caagcgcagt gggtttggtc cagctgaaga tgagggtacg tggtagttgt
     1561 gaattcttac tctcattgtt aacaaactcc cgccaattgg aacaagtgct agctgttact
     1621 cctgcttccg ccgtgttggc gagaggagat gttcagtttc cctggcctgt ttatgaacag
     1681 ccatacctgt aagcttcttc tcgagtgtaa gtcttttatc ataggcgtct gtacagcaac
     1741 catcaaagct gcccctccct tagtggtccg ccctctcccc tgccttgggg ctgcccgttg
     1801 gagtcctctg gtctcaccct gagaggagcc tgggggtggg ctagatagtg accccccagg
     1861 tttccttctg tttgttaaaa gggacagtat gcagctgctt ctctgtggaa agggggttcg
     1921 gttcggggag ctgtcaaggt ggcccggtgt tcataactca gtttcctgtt ttgcacgatg
     1981 taaaaaaaaa atctgtcttt ttgcacgaaa tagccaaaag tattggtatg cttctgcctg
     2041 ggttcccttt ctctccagtt ggcttctgag ggccttgggg gtgcccagca agctgttttc
     2101 aagcgagggg gcactcggat tctctccttg tctctctccc tcactttttt ctagtagcag
     2161 cattaaaggt taggcagtca ctggggaacc atgttcctct acgtagtggg gtaagggaaa
     2221 attgggagga aggcctctcc catgggtttt tcttagtatg cccctcatac aggctggcct
     2281 gttggttgca tggggcaagg tttaggactt ctgaagcctt tcttttggtt tgaagtggtg
     2341 agtgagtgat attgtaacat cggtctccag gaatgtacca acgaactgtg cagagttcct
     2401 taggtctaaa ctaggaccct ggactgggga gacccctgtg caggccagct ctggagaagc
     2461 ctgggagttt ggagcccctg caggcccttt gcttgagggc agtgtggtcc ggacactggt
     2521 ggttctgggg ctcgagggac agggaggctt cagctttctc tgaagttgac attgctcttt
     2581 agcagttcaa atacttgttc tcaaaaatgt tttttttttt tgttaaaaaa aaaaagtttt
     2641 tttataaatc ggatgggtat gtttcataaa cattgtttct tataaagcgt gaaaaggaag
     2701 gatgcccgag tcagtcatat ttatttacat ctagatggac tctcaaaaaa ggaagtagga
     2761 aaaaaaaaaa aagaaaaaaa aaaaaaagga ccctcagcct ctctgctggg ggcttctcca
     2821 cgtggtcccc ttgtgcaggg ccaccaggtg aacttggtcc acattctcac actgaagcac
     2881 caggggggtt gaactgtaac tggctaatca gagcctatat tttgtcctag tatctttcat
     2941 ggttgaccag ccaactgcct ttttgtttta tttttaattc tgttgcttct attaacacaa
     3001 aaatagagag agatagtttc tgaaacccat tttattgtgt agatccccaa gggagaagtt
     3061 ctgctgtaga gaaaaatagt aagaaggtgg cttagaaaca accttctcct cagacaactg
     3121 tctggctctg actagggcaa aacgtccagg aaaagctgga gaggaatttg ccaaagatct
     3181 gccccatgac attgcctgtc ccgtgtcttc accatgagag tagccaaagt ttcaaagtgt
     3241 ttctctcttt aaagaaaaaa acaaaactct gcaaagtttt gaaaatgtgt ttaagaatag
     3301 gtgtgatttt agagtggaac tgccaaccct ggcaattgcc gtattgctcg tagaagattc
     3361 aattctggtg acgcctctgg aaggcatttg atattcatct ccatttctgt ttccttcatt
     3421 tcctttctgt tctttgacag gtttacccct gtggctggtg tctagaagtc aagacacctt
     3481 gtttttctgt tagagtgagc tgggcagctg caatcagcat tatgcaaatt agatacggcc
     3541 catctagggg gctcctggtt ggaggctaat ggagtagggg gagggaaagt tgtcacccca
     3601 aaagtaggcc cctcccgttg gctttggcca ggccagacac ttaacatcgt ttacatggtt
     3661 ctgcgtaatt ataaagctta tgtgtataaa gcgaagctgt tttctgtgaa actgtatatt
     3721 ttgtaaataa atatattgct actttgaggt tca
//
LOCUS       XM_032609575            5180 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synapse defective Rho GTPase homolog 2
            (SYDE2), transcript variant X1, mRNA.
ACCESSION   XM_032609575
VERSION     XM_032609575.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5180
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5180
                     /gene="SYDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742241"
     CDS             16..3561
                     /gene="SYDE2"
                     /codon_start=1
                     /product="rho GTPase-activating protein SYDE2 isoform X1"
                     /protein_id="XP_032465466.1"
                     /db_xref="GeneID:116742241"
                     /translation="MHDLPPDSGRRQGDRGRADRGCPAGARAPGQPPYPCGAAARRAC
                     PRDCERGGGDCPWQQVSPPRSPPRESGGGRPRTPRMRLSCSRSLDSLRVGAKPPSLQR
                     WRSDSWIRCGARGEPDEPPPRGGGMDGWSGGSSRAAAPSGLRPPSSEDPRRSSGSRGR
                     EDGQEGLPFLKPPAVTVKKLQKWMYKGRLLSLGMKGRARRTPPEVTRAQATSPNLGAL
                     KMRESQVVSVPPDQRITLTDLFENVYESSMKRRELEDLKDNIGFRGHKPLNSITVSKK
                     RNWLYQSTLRSFNLEDENKKCQDISHLSISPVSLPKLQLSRPFLKSSEEYCTYMVCTA
                     TNSSLSRDCSLDFNEENDADDEGEIWYNPIPEDDDFGISNALSFGEADSAVLKFPDVG
                     LRVLSGSDLMKEEQHTEDLLCSSEHTGDVQTTQSNEINPIDSIYSTEFVEQYKQRHGH
                     KTQEGIIVEESPTLKSPFAGPGIVAATNKPDLGVTGPSSPSPSPVKKGSSIHWSFPDK
                     IKSPRTVRKLSMRMKRLPELSRKLSVKGNLNYGNSPDNTPSLSKCNWQEIHHAVILPS
                     GNTTTAAKRNVISRYHLDTSVSSQHSYQKKTSVSSKYSCKSGYLSDGDSPELIAKSSK
                     HGCENKFAKGKEIIPNSCSKNEIDIDAFRHYSFSDQPKCSQYISGLMNVHFYGAEDLK
                     PPRIDSKDVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEP
                     TPRKNRVCCHGTVVLPTLFRVTKTHLLAVKLEPRGLIYVKVTLLEQWENSLHGLDINR
                     EPVIFGVDIRKVVEKENIGLMVPLLIQKCIVEIEKRGCQVVGLYRLCGSAAVKKELRE
                     AFERDSKAVGLCESQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMAKYPLKMS
                     SNGCENDPSDSKYTVDLLDCLPDVEKATLMMLLDHLKLVASYRDVNKMTCQNLAVCFG
                     PVLLSQRQETSSHNNRVFIDSEELASALDFKKHIEVLHYLLQLWPVQRLTIKESANNL
                     FPEQKSSLNYLRRKKERPYLLNLSGTDSSRVLRPRQTRLDSPLSNRYAGDWSSCGDNY
                     FLNMKENLNDVDYDDVPSEDRENGENCSKMYEPDMIEQPTPTSKECTFQTYLTMQAIE
                     SRDRKVNLKDLQESIDTLIGNLERELNKNKLNMSV"
     misc_feature    <22..705
                     /gene="SYDE2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2017..2364
                     /gene="SYDE2"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
     misc_feature    2422..3066
                     /gene="SYDE2"
                     /note="GTPase-activator protein (GAP) for Rho-like
                     GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases.
                     Small GTPases (G proteins) cluster into distinct families,
                     and all act as molecular switches, active in their
                     GTP-bound form but inactive when bound to...; Region:
                     RhoGAP; cl02570"
                     /db_xref="CDD:470621"
     misc_feature    order(2542..2544,2662..2664,2674..2676,2911..2913,
                     2920..2925,3031..3033)
                     /gene="SYDE2"
                     /note="GTPase interaction site; other site"
                     /db_xref="CDD:238090"
     misc_feature    2542..2544
                     /gene="SYDE2"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:238090"
ORIGIN      
        1 ctgctgatcc aggccatgca cgacctgccc cctgactcgg gcaggcggca gggtgaccgg
       61 ggcagggcgg atcgcggctg ccctgcggga gcccgggctc cgggccagcc gccttacccc
      121 tgcggcgcgg cggcccgccg agcctgcccc cgagactgcg agcggggagg cggcgactgc
      181 ccttggcagc aggtgtcccc tccccggtcg cctccgaggg agtcgggggg aggccgcccg
      241 cggactcctc ggatgcggct gtcctgcagc agaagcctcg acagcctccg cgtgggtgcc
      301 aagccgcctt ccttacagcg gtggcggagc gacagctgga tcaggtgcgg cgcgcgcggg
      361 gaaccggacg agcccccgcc acgtggaggc gggatggacg gctggagcgg aggcagctcc
      421 cgggccgcgg cgccctccgg cctccggcct cccagctccg aggacccccg ccgctcctcg
      481 ggaagccgtg gcagagaaga cggacaggag gggctcccct tcctcaaacc gcccgcggtg
      541 acagtcaaga agctgcagaa gtggatgtac aaaggacgcc tgctgtctct gggaatgaag
      601 ggtcgcgctc gtaggacacc ccccgaagtc acccgagcgc aggcaacgtc tccaaatctg
      661 ggcgctttga aaatgcggga aagccaagtc gtctcggtgc cgccagacca aagaattacg
      721 ctgacagact tatttgaaaa tgtctatgag tcttcaatga agagaagaga acttgaagat
      781 ctgaaggata atattggctt caggggtcat aagccactta atagcatcac tgtgtcaaag
      841 aaacgcaatt ggctatatca gagtactctg agatctttta atttggaaga cgaaaataag
      901 aaatgccaag atataagtca tttatccatc tcacccgttt ctctacctaa actgcagctg
      961 tcacgacctt tcctcaaatc atctgaagaa tattgtacgt atatggtgtg tactgctaca
     1021 aattcttcat tatcaagaga ctgttcatta gactttaatg aggaaaatga tgcagatgat
     1081 gaaggagaaa tatggtacaa ccccattcct gaggatgatg actttggtat ttcaaatgcc
     1141 ttgagttttg gggaggcaga ctctgctgtt ctgaagtttc ctgatgtcgg tttgagagta
     1201 ttatctggta gtgacctaat gaaagaagag cagcacactg aagacttgct gtgctcttct
     1261 gaacacacag gcgatgttca gaccacacag tcaaatgaaa taaatcctat agattccatc
     1321 tattccacag agtttgtgga gcagtacaag caaaggcatg gacacaagac acaagaaggt
     1381 ataatagtag aggagagtcc cacgttgaaa tctccttttg caggtcctgg gatagtagct
     1441 gctacaaata agcctgattt gggagttaca ggaccatctt ctccaagccc tagccctgtg
     1501 aaaaaaggca gttcaattca ttggtctttc ccggataaaa taaaatctcc acgaactgtg
     1561 aggaaacttt ccatgagaat gaaaaggttg ccagaactta gccggaaact aagtgttaaa
     1621 ggaaacttga attatggaaa cagtccggat aatactcctt ccttgtctaa atgtaactgg
     1681 caagaaattc atcatgctgt tattctacct tctgggaaca caaccacagc tgctaagagg
     1741 aatgttataa gccggtacca tcttgatact agtgtgtctt ctcagcacag ctaccagaag
     1801 aaaacctctg tgagttctaa gtattcctgc aaaagtggtt acctcagtga tggagattct
     1861 cctgaactta tagctaaatc tagcaaacat ggatgtgaaa acaaatttgc aaaaggaaaa
     1921 gaaataattc caaatagttg tagcaagaat gaaatagaca ttgatgcttt tagacattat
     1981 agcttttctg atcaacctaa gtgttctcag tacatatctg ggctcatgaa tgtgcatttc
     2041 tatggtgctg aggatttaaa accacctcgg atagattcaa aagatgtctt ttgtgcaatt
     2101 caggtagatt cagtaaacaa agccagaaca gctttgctca catgtcggac aacgttttta
     2161 gacatggatc acactttcaa catagaaatt gaaaatgcac agcatttgaa attagtagta
     2221 ttcagttggg aacccactcc aagaaaaaat cgagtgtgtt gtcatggaac tgttgttctt
     2281 cccaccttat tcagagtgac aaagacacat ctgttggctg tcaaacttga acctagaggt
     2341 cttatttatg tgaaagtgac tcttttggaa cagtgggaga attcacttca tggactagat
     2401 ataaatcgag aaccagtaat atttggtgtt gatattcgaa aagttgtaga gaaagaaaat
     2461 ataggcttga tggtaccact cctgattcag aaatgtattg tggaaattga aaagagaggc
     2521 tgtcaggtag taggcctgta ccgattatgt ggctcggcag cagtcaagaa agaacttcga
     2581 gaggcttttg agagggatag caaagctgtt ggtctgtgtg aaagccaata cccagatata
     2641 aatgtaataa caggtgttct taaggattat ttaagagaac ttccttctcc tctgataaca
     2701 aagcagcttt atgaggctgt attagatgca atggcaaaat atcctttgaa aatgtcatca
     2761 aatggttgtg agaatgatcc aagtgattct aagtacactg ttgacctgct ggattgtctg
     2821 cctgacgtcg agaaggcaac cctaatgatg ttgttggatc atttgaaatt ggtggcttct
     2881 tatcgtgacg tgaataagat gacttgccag aatttggctg tgtgctttgg acccgtatta
     2941 ttaagtcaga ggcaagagac ttccagccat aacaacagag tctttattga ttcagaagaa
     3001 cttgcaagtg ctttggattt taaaaaacat attgaagttc ttcattactt acttcaactc
     3061 tggccagtgc aacgtttaac tatcaaagaa tcagcaaaca atttgttccc agagcagaag
     3121 tcttctctaa attatttgag gcggaagaaa gaacgacctt acctgttaaa tttgagtggt
     3181 actgattcat caagagtact taggccaagg caaaccagat tagacagtcc actaagtaat
     3241 cgttatgcag gagactggag cagctgtgga gataactact ttttaaatat gaaagaaaat
     3301 ttaaatgatg tggattatga cgatgtgcct tcagaagaca gagaaaatgg ggaaaactgt
     3361 agcaaaatgt atgaaccaga tatgattgaa cagccaactc ccacatccaa agagtgcaca
     3421 tttcagacat atttgacaat gcaggctatt gagtctaggg accgaaaagt caatctcaaa
     3481 gacctacaag aaagtatcga tactttgatt ggaaatctgg agcgtgaact caacaaaaac
     3541 aagcttaata tgagtgtttg aggttgagag gttttttttt aataatgtct taagtttcac
     3601 atcaatcttc gtcactttct tgtatccctc acagtgatgt tttaaatttt ttactcttga
     3661 aagcttcagt tactttctaa caggttcatg tgattcaatt aaaaacatca ttcattaaca
     3721 taatttttac ttatttcatt agaaaatttt tcttgaggta aaaagataac ctggacttct
     3781 tgtggatatt tgtttaaatc ttgccaattc tatggatata actttaaaat gcacttctaa
     3841 gattcacata agttattagc ccctcaagat ttttgtactt tataggaact gcttttctga
     3901 aacagatgtt ccttctagaa gaatgctgtg gctgcttagt ctgatttgca gtatgagtcc
     3961 atgcacactg caatcattca atcacatttc atttgcaatg caaatgctgc tataagaaaa
     4021 cctttttata aataaaagta aaattataca aatattaatg tattctgtat taacattcag
     4081 taattattta aatataaaat taaatatttt tataatcccc aaaatatgta tatatttata
     4141 agtgcatata tatataggta ttagaatgag gggagggatt ggctgcagaa tcacgtgtat
     4201 ctttaaaata tatgtcatga ggccaaaatc attagcttaa aaatgtcctt ttcagggaaa
     4261 taacatttaa gttaaaggag gagttgcata gaaacacttg aaccaaaaca ctagaaacat
     4321 ctaaatatag aaaaaataga ctttcctttt ttgattcaca gaaagtcaca atatccccag
     4381 tgagaagtca tcctttaaat tgaaatcttc taatttttta agggattaag tttcgagatt
     4441 tctgcactgg tgacttaaat ttaaaattct tcacctaatc tatgtgtttt tatcttctgc
     4501 tttttaaaac aaagtaatta tacttagaac atatttattt gtaatacata tataactttg
     4561 actttataat taccttcatt tgtttctaaa gaaatcttgc cagcatacta catgttattg
     4621 atttttaaaa aattaactta ttttggctaa ttatatcttc aagatagtca ttatagcaat
     4681 cacaacagtg tttgaaaatg taaatttaga agttttttta ttaaatcgga atgtattttt
     4741 ttaaactttt atacctacag aatgtgtaat ttaaaattat taataaaatt tgagttatca
     4801 acttaaagat gtagcagcca ttaaaaaaac tgactccttg atgtttttct aaatattatt
     4861 taactatttc tatgcaatat acattgataa gtggaacaca ttgttattta atttgaaaat
     4921 ttacttgtta aaaaaccaga taaataacta tttttatatg aaattttcat ttttaaagct
     4981 ttgtataaca attcagaaga atcccaaaag aatatgtgac agatatatat atattgagta
     5041 aacagtcaat agaaatgtac ctaaatattt tgtaagaaga ctgtcagtct tcttcctttt
     5101 gtttgctata tcatgtatat tgtatgaatt actcagttgt tccagaaatg taaaagcttt
     5161 attaaaatat ataaccttgg
//
LOCUS       XM_032609579            3012 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synapse defective Rho GTPase homolog 2
            (SYDE2), transcript variant X2, mRNA.
ACCESSION   XM_032609579
VERSION     XM_032609579.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3012
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3012
                     /gene="SYDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742241"
     CDS             16..2841
                     /gene="SYDE2"
                     /codon_start=1
                     /product="rho GTPase-activating protein SYDE2 isoform X2"
                     /protein_id="XP_032465470.1"
                     /db_xref="GeneID:116742241"
                     /translation="MRLSCSRSLDSLRVGAKPPSLQRWRSDSWIRCGARGEPDEPPPR
                     GGGMDGWSGGSSRAAAPSGLRPPSSEDPRRSSGSRGREDGQEGLPFLKPPAVTVKKLQ
                     KWMYKGRLLSLGMKGRARRTPPEVTRAQATSPNLGALKMRESQVVSVPPDQRITLTDL
                     FENVYESSMKRRELEDLKDNIGFRGHKPLNSITVSKKRNWLYQSTLRSFNLEDENKKC
                     QDISHLSISPVSLPKLQLSRPFLKSSEEYCTYMVCTATNSSLSRDCSLDFNEENDADD
                     EGEIWYNPIPEDDDFGISNALSFGEADSAVLKFPDVGLRVLSGSDLMKEEQHTEDLLC
                     SSEHTGDVQTTQSNEINPIDSIYSTEFVEQYKQRHGHKTQEGIIVEESPTLKSPFAGP
                     GIVAATNKPDLGVTGPSSPSPSPVKKGSSIHWSFPDKIKSPRTVRKLSMRMKRLPELS
                     RKLSVKGNLNYGNSPDNTPSLSKCNWQEIHHAVILPSGNTTTAAKRNVISRYHLDTSV
                     SSQHSYQKKTSVSSKYSCKSGYLSDGDSPELIAKSSKHGCENKFAKGKEIIPNSCSKN
                     EIDIDAFRHYSFSDQPKCSQYISGLMNVHFYGAEDLKPPRIDSKDVFCAIQVDSVNKA
                     RTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPTPRKNRVCCHGTVVLPTLFRV
                     TKTHLLAVKLEPRGLIYVKVTLLEQWENSLHGLDINREPVIFGVDIRKVVEKENIGLM
                     VPLLIQKCIVEIEKRGCQVVGLYRLCGSAAVKKELREAFERDSKAVGLCESQYPDINV
                     ITGVLKDYLRELPSPLITKQLYEAVLDAMAKYPLKMSSNGCENDPSDSKYTVDLLDCL
                     PDVEKATLMMLLDHLKLVASYRDVNKMTCQNLAVCFGPVLLSQRQETSSHNNRVFIDS
                     EELASALDFKKHIEVLHYLLQLWPGNK"
     misc_feature    1780..2127
                     /gene="SYDE2"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
     misc_feature    2185..2829
                     /gene="SYDE2"
                     /note="GTPase-activator protein (GAP) for Rho-like
                     GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases.
                     Small GTPases (G proteins) cluster into distinct families,
                     and all act as molecular switches, active in their
                     GTP-bound form but inactive when bound to...; Region:
                     RhoGAP; cl02570"
                     /db_xref="CDD:470621"
     misc_feature    order(2305..2307,2425..2427,2437..2439,2674..2676,
                     2683..2688,2794..2796)
                     /gene="SYDE2"
                     /note="GTPase interaction site; other site"
                     /db_xref="CDD:238090"
     misc_feature    2305..2307
                     /gene="SYDE2"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:238090"
ORIGIN      
        1 ccgcggactc ctcggatgcg gctgtcctgc agcagaagcc tcgacagcct ccgcgtgggt
       61 gccaagccgc cttccttaca gcggtggcgg agcgacagct ggatcaggtg cggcgcgcgc
      121 ggggaaccgg acgagccccc gccacgtgga ggcgggatgg acggctggag cggaggcagc
      181 tcccgggccg cggcgccctc cggcctccgg cctcccagct ccgaggaccc ccgccgctcc
      241 tcgggaagcc gtggcagaga agacggacag gaggggctcc ccttcctcaa accgcccgcg
      301 gtgacagtca agaagctgca gaagtggatg tacaaaggac gcctgctgtc tctgggaatg
      361 aagggtcgcg ctcgtaggac accccccgaa gtcacccgag cgcaggcaac gtctccaaat
      421 ctgggcgctt tgaaaatgcg ggaaagccaa gtcgtctcgg tgccgccaga ccaaagaatt
      481 acgctgacag acttatttga aaatgtctat gagtcttcaa tgaagagaag agaacttgaa
      541 gatctgaagg ataatattgg cttcaggggt cataagccac ttaatagcat cactgtgtca
      601 aagaaacgca attggctata tcagagtact ctgagatctt ttaatttgga agacgaaaat
      661 aagaaatgcc aagatataag tcatttatcc atctcacccg tttctctacc taaactgcag
      721 ctgtcacgac ctttcctcaa atcatctgaa gaatattgta cgtatatggt gtgtactgct
      781 acaaattctt cattatcaag agactgttca ttagacttta atgaggaaaa tgatgcagat
      841 gatgaaggag aaatatggta caaccccatt cctgaggatg atgactttgg tatttcaaat
      901 gccttgagtt ttggggaggc agactctgct gttctgaagt ttcctgatgt cggtttgaga
      961 gtattatctg gtagtgacct aatgaaagaa gagcagcaca ctgaagactt gctgtgctct
     1021 tctgaacaca caggcgatgt tcagaccaca cagtcaaatg aaataaatcc tatagattcc
     1081 atctattcca cagagtttgt ggagcagtac aagcaaaggc atggacacaa gacacaagaa
     1141 ggtataatag tagaggagag tcccacgttg aaatctcctt ttgcaggtcc tgggatagta
     1201 gctgctacaa ataagcctga tttgggagtt acaggaccat cttctccaag ccctagccct
     1261 gtgaaaaaag gcagttcaat tcattggtct ttcccggata aaataaaatc tccacgaact
     1321 gtgaggaaac tttccatgag aatgaaaagg ttgccagaac ttagccggaa actaagtgtt
     1381 aaaggaaact tgaattatgg aaacagtccg gataatactc cttccttgtc taaatgtaac
     1441 tggcaagaaa ttcatcatgc tgttattcta ccttctggga acacaaccac agctgctaag
     1501 aggaatgtta taagccggta ccatcttgat actagtgtgt cttctcagca cagctaccag
     1561 aagaaaacct ctgtgagttc taagtattcc tgcaaaagtg gttacctcag tgatggagat
     1621 tctcctgaac ttatagctaa atctagcaaa catggatgtg aaaacaaatt tgcaaaagga
     1681 aaagaaataa ttccaaatag ttgtagcaag aatgaaatag acattgatgc ttttagacat
     1741 tatagctttt ctgatcaacc taagtgttct cagtacatat ctgggctcat gaatgtgcat
     1801 ttctatggtg ctgaggattt aaaaccacct cggatagatt caaaagatgt cttttgtgca
     1861 attcaggtag attcagtaaa caaagccaga acagctttgc tcacatgtcg gacaacgttt
     1921 ttagacatgg atcacacttt caacatagaa attgaaaatg cacagcattt gaaattagta
     1981 gtattcagtt gggaacccac tccaagaaaa aatcgagtgt gttgtcatgg aactgttgtt
     2041 cttcccacct tattcagagt gacaaagaca catctgttgg ctgtcaaact tgaacctaga
     2101 ggtcttattt atgtgaaagt gactcttttg gaacagtggg agaattcact tcatggacta
     2161 gatataaatc gagaaccagt aatatttggt gttgatattc gaaaagttgt agagaaagaa
     2221 aatataggct tgatggtacc actcctgatt cagaaatgta ttgtggaaat tgaaaagaga
     2281 ggctgtcagg tagtaggcct gtaccgatta tgtggctcgg cagcagtcaa gaaagaactt
     2341 cgagaggctt ttgagaggga tagcaaagct gttggtctgt gtgaaagcca atacccagat
     2401 ataaatgtaa taacaggtgt tcttaaggat tatttaagag aacttccttc tcctctgata
     2461 acaaagcagc tttatgaggc tgtattagat gcaatggcaa aatatccttt gaaaatgtca
     2521 tcaaatggtt gtgagaatga tccaagtgat tctaagtaca ctgttgacct gctggattgt
     2581 ctgcctgacg tcgagaaggc aaccctaatg atgttgttgg atcatttgaa attggtggct
     2641 tcttatcgtg acgtgaataa gatgacttgc cagaatttgg ctgtgtgctt tggacccgta
     2701 ttattaagtc agaggcaaga gacttccagc cataacaaca gagtctttat tgattcagaa
     2761 gaacttgcaa gtgctttgga ttttaaaaaa catattgaag ttcttcatta cttacttcaa
     2821 ctctggccag gcaataaatg aagactctta gtagctaatg ccgtataatc aagctcagtg
     2881 caacgtttaa ctatcaaaga atcagcaaac aatttgttcc cagagcagaa gtcttctcta
     2941 aattatttga ggcggaagaa agaacgacct tacctgttaa atttgagtgg tactgattca
     3001 tcaagagtac tt
//
LOCUS       XM_032609588            3339 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 3 (PLPP3), mRNA.
ACCESSION   XM_032609588
VERSION     XM_032609588.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3339
                     /gene="PLPP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 4 long SRA reads, 21
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742259"
     CDS             601..1539
                     /gene="PLPP3"
                     /codon_start=1
                     /product="phospholipid phosphatase 3"
                     /protein_id="XP_032465479.1"
                     /db_xref="GeneID:116742259"
                     /translation="MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCL
                     FMAGLPFIIIETSTIKPYHRGFYCNDESIKYPLKTGETINDAVLCAVGIVIAILAIIT
                     GEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFL
                     NVCNPDFSQINCSEGYIQNYKCRGDDSKVQEARRSFFSGHASFSMYTMLYLVLYLQAR
                     FTWRGARLLRPLLQFTLIMMAFYTGLSRVSDHKHHPSDVLAGFAQGALVACCIVFFVS
                     DLFKTKTTLSLPPPAIRKDILSPVDIIDRNNHHNMV"
     misc_feature    976..1416
                     /gene="PLPP3"
                     /note="PAP2, wunen subfamily. Most likely a family of
                     membrane associated phosphatidic acid phosphatases. Wunen
                     is a drosophila protein expressed in the central nervous
                     system, which provides repellent activity towards
                     primordial germ cells (PGCs), controls the...; Region:
                     PAP2_wunen; cd03384"
                     /db_xref="CDD:239479"
     misc_feature    order(1045..1047,1066..1068,1192..1200,1336..1338,
                     1354..1356,1366..1368)
                     /gene="PLPP3"
                     /note="active site"
                     /db_xref="CDD:239479"
ORIGIN      
        1 aaatgtggcc ttaattatcc tacgtcttcg gctgcttaag gaaggggctg tgctttcgga
       61 atctcttctg agccaagtaa ggaggtccct ctctcttttt aaaggacctc ttgaaataaa
      121 actgccgaaa acaaatccag gcgatcacaa cggcagctgc ggcggcagca gcagcagcag
      181 caggaggagg aggaaagtta gagttgcggc agcgcttcgg cgtggctggg ctccgcgcag
      241 ccggactccg cgcagctccc attcattaag caaccagccg cggaaaaaag gtggtcgagg
      301 gcccgcgctg cccgctcgct gctttgcaca cagaaacggg agccccgcgc gtccggggca
      361 gcgcggcgct gcagaagttt ctgctcggga gttgtctctc tcccccctgg actttcgaac
      421 gattcgggat tgaggcagga aaagcagagg agccccaggg gagcagaaag caccaccgcc
      481 tgccgttgga agcgggcagc ggggccgcac tctcccgccg cgccccgagc agcctcggcc
      541 gggaggcgac ccgggcgtct gggtgtgtga ctgctgtcgc ggggcgtctt gaccagcgcc
      601 atgcaaaact acaagtacga caaggcgatc gtcgcggaga gcaagaacgg cggcagcccg
      661 gcgctcaaca acaacccgag gaagggcggc agcaagcggg tgctgctcat ctgcctggac
      721 ctcttctgcc tcttcatggc gggcctgccc ttcatcatca ttgagacaag caccatcaag
      781 ccttaccacc gggggtttta ctgcaatgac gagagcatca agtacccgct gaaaaccggt
      841 gagacaatca atgatgctgt gctctgcgcc gtggggattg tcatcgccat cctcgcgatc
      901 atcacagggg aattctaccg catctattac ctgaaggaga agtcccggtc cacgattcag
      961 aatccctatg tggcagccct ctataagcaa gtgggctgct tcctctttgg ctgtgccatc
     1021 agccagtcct tcacagacat tgccaaagtc tccatagggc gcctgcgtcc tcacttcttg
     1081 aacgtctgca accctgattt cagtcaaatc aactgctccg agggctacat tcaaaactac
     1141 aaatgcagag gcgatgacag caaagtccag gaagccagga ggtccttctt ctctggccac
     1201 gcctccttct ccatgtacac catgctgtat ttggtgctgt acctgcaggc ccgcttcact
     1261 tggcgagggg cccgcctgct ccggcccctc ctgcagttca ccctgatcat gatggccttt
     1321 tacacaggac tgtcccgcgt gtctgaccac aagcaccatc ccagtgatgt cctggcgggg
     1381 tttgctcaag gagccctggt ggcctgctgc atagttttct tcgtgtctga cctcttcaag
     1441 accaagacga cactctccct gcctcctcct gctatcagga aggacatcct ttcacctgtg
     1501 gacattatcg acaggaacaa tcaccacaac atggtgtagg tactacccac ctcctgagct
     1561 gtttttggaa aatgactgct gacagcaagt ttttgctgct ctcctatctc atcagacagt
     1621 agaatgtagg gaaaaacttt ttgcccgact gatttttaaa aaggaaaaaa aaaagtctta
     1681 ccttgtggcc ttccaaaata ggtagtgttc acctatatgg aaacaacagc aaagtaacag
     1741 caagtgcggg gatgctggat gtgcagttgg tttaagtgtt catgttctag tgaacacagg
     1801 cttgttctgg aacaaacact aagatgattt gagtagagcc tgccggtcac ctgtgtgacc
     1861 tgaggaatcc caggcctgtt ggaaaagctc aaattcacct tgtagcacac gatgccagaa
     1921 atagcagtga atcaagaaaa tagccatcgg gggctcccct gttgtgtctc tctgtccaca
     1981 ccactcgatt ctccactgtg actttggttc aggaatcttg tttgtttgtt tttgttttta
     2041 actataagaa gagagcacgt ttgctcagtt aagcgatcag atcctgaatc caaatttcca
     2101 gttgtgaagc cttatcactc acttcctcag cccgtaggcc agcaaccaca gtccctcact
     2161 ttagtgatta ggtgactctt tgtggatgag tgaatttcac aaatagcaca atttcagaag
     2221 cgctcaaggg cacaggccct ccccgtgtct tctcttgatg caccagcctg tgatgtcaat
     2281 tacaggatgc tgatgttgtg tacgtcaatc accagggcac tgccacgctc aagtagtgat
     2341 ggttagcttc ggtcactgct ttcttcctgg aaacccttgc tgggtgccca ccgggattgc
     2401 ctgggagtgc ccggagacga gcaaagatgt ggtctgccat cagctgatgg aaagcagcct
     2461 tccatgcaag agatgaagga gtggaggggg cagaatgaaa agtgaagcaa ccctttggct
     2521 actcaaagtc tgaatgagcc agaatagcag acagtctcac atcccagagg ctgcccttcc
     2581 agataaagtg ggggtctctg ggggagccgc tcttgctaag ctgtgtaaag cactattgtc
     2641 ttggggttga tctctagggc agttcttggt aggttctgct gggcagaaca cgtgggttaa
     2701 atctccgtag agtttcctca tcctctctcc gtaagtgccc ttccaagcaa ggtcccactc
     2761 gaggcagcag acagggaccg cttctactga acctttgagg aaaggaggaa ggaagaaatg
     2821 ctttcagatc tcagatgcaa acctttcaaa gggctaaatg taaccacatg ggtcaaccac
     2881 atgtacatcc ttacaacaga agccgtcctt tcatttcaac ttatagcaag ctatgatttt
     2941 tatatataaa tgttatataa ataatgtata aaacattaaa agttaactat gtaaaatatt
     3001 atttctgaaa caattttagc tatatccact atgactataa actgtgtctc gacctgtgtt
     3061 atttacatta gctgctttca aaagcatgga gttcattttt ttttaatatc aactaaaata
     3121 ttgtagttct gtgctagaca ttgtttttac aatgaaagaa ataactgcaa ctagagaaaa
     3181 ctgtataaaa acattaaatt gtcagtattt ttgtaaggtt ccattttgta aagagaataa
     3241 tattcaaaga cttttgtaga atacaaagtg aaaacttgta tctgcgaaac tatacttgta
     3301 ttaaaggtgc tttttaaata aaagctcata acaactaag
//
LOCUS       XM_032609599            3823 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tubulin tyrosine ligase like 10 (TTLL10),
            mRNA.
ACCESSION   XM_032609599
VERSION     XM_032609599.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                VOSU01000011.1     362748-362822
            76-281              VOSU01000011.1     362825-363030
            282-400             VOSU01000011.1     363146-363264
            401-530             VOSU01000011.1     363346-363475
            531-602             VOSU01000011.1     364165-364236
            603-688             VOSU01000011.1     364734-364819
            689-860             VOSU01000011.1     365171-365342
            861-1032            VOSU01000011.1     366286-366457
            1033-1173           VOSU01000011.1     366974-367114
            1174-1290           VOSU01000011.1     371501-371617
            1291-1384           VOSU01000011.1     371967-372060
            1385-3823           VOSU01000011.1     372353-374791
FEATURES             Location/Qualifiers
     source          1..3823
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3823
                     /gene="TTLL10"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116742270"
     CDS             10..1800
                     /gene="TTLL10"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:127..129,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: inactive polyglycylase
                     TTLL10"
                     /protein_id="XP_032465490.1"
                     /db_xref="GeneID:116742270"
                     /translation="MGSHREEGLLRQLSQLDQDADGRAGPREGQKSHQLGQSLXPPTL
                     PAELDDADTVRPRAALLEKHPLEGEKQRPGTGQGPFFYIGGTNGAAIISSYCKSKGWQ
                     RIQDSRREDYKLKWCEVKCRDTYCSFREGEQLLYQLPNSQLLTTKIGLLSALREHARV
                     LSKTSKLAPCAQAKSGKDTTPAPDELMWSSSGHLGPQSALKMEDFFPETYRLDIRDER
                     EAFFTLFDETRMWICKPTASNQGKGIFLIRNQEEVAALQAETQSIEDDPIYRKMPFRA
                     PQARIVQRYIQNPLLLDGKKFDVRSYLLIACTMPYMVFFGHGYARLTLGLYDPHSSDL
                     GGHLTNQFMQKKSPLYLLLKDDTVWSMEHLNRYINDKFRKAKRLPRDWVFTTFTKRMQ
                     QIMAHCFLSVKSKLKCKLGYFDLMGCDFLIDENFKVWLLEMNSNPALHTNCEVLKEVI
                     PGVVTETLDLALETFQKRLRGQKMLPLLSQRRFVLLHNGEADLWPRPGGSRSVPRPPS
                     PPPAASFALRAAGRPGARRPAPRRGPSGAPGRPSSAQRRPRPPTPSPDGAQGGDPETP
                     GGGEPAREPSPGSSEEERKNAGHRRPRGGL"
     misc_feature    556..1383
                     /gene="TTLL10"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; Region: CPSase_L_D2; cl17255"
                     /db_xref="CDD:473076"
ORIGIN      
        1 gagagatcaa tggggagcca ccgagaggag gggctcctac gtcagctaag ccagctggac
       61 caagacgcag atgggcgggc agggcccagg gaggggcaga aaagccacca gctgggccag
      121 agcctctgac cacccactct gcccgcagag ctggacgatg ctgacactgt caggccccgg
      181 gccgccctcc tggagaagca cccgctggag ggggagaagc agcggcccgg caccgggcag
      241 ggccccttct tctacatcgg aggcaccaac ggggccgcaa taatcagctc ctattgcaaa
      301 agcaagggct ggcagcgcat ccaggacagc cggcgggaag actacaagct caagtggtgc
      361 gaggtcaagt gcagggacac ctactgcagc ttccgggaag gtgagcagct gctgtaccag
      421 ctccccaaca gccagctcct caccaccaag atcgggcttc tcagcgccct gagggagcac
      481 gcgcgtgtcc tcagcaagac cagcaagctg gccccctgcg cacaggccaa atctggaaag
      541 gacacgacac ccgccccaga tgagctcatg tggagcagct caggacacct tgggccacag
      601 agcgccctga aaatggaaga ttttttccca gagacctacc gtctggacat cagggacgag
      661 agagaggctt tcttcaccct ctttgatgaa acccggatgt ggatctgcaa gcccaccgcc
      721 tccaaccagg gcaaaggcat ctttctaatc cggaaccagg aggaagtcgc cgccctccaa
      781 gccgagaccc agagcatcga ggacgatccc atctaccgca agatgccctt ccgggcgcct
      841 caggcgcgga tcgtgcagag gtacatccag aacccgctgc tgctggatgg gaagaagttc
      901 gacgtgcgct cctacctgct catcgcctgc accatgccct atatggtctt cttcggccac
      961 ggctatgctc gcctcaccct cggcctttat gatccccatt ccagcgacct cggtggccat
     1021 ttaaccaacc agttcatgca gaagaagagc cccctgtacc tgctgctcaa ggatgacacg
     1081 gtgtggagca tggagcacct gaaccgctac atcaacgaca agttccgcaa ggccaagcgc
     1141 ctcccccggg actgggtctt caccaccttc acgaagcgga tgcagcagat catggcccac
     1201 tgcttcctgt ctgtcaaatc caagctcaag tgcaagctgg gctactttga cctcatgggt
     1261 tgtgacttct tgattgatga aaacttcaag gtgtggctgc tggagatgaa ctccaacccc
     1321 gccctgcaca ccaactgtga agtcctgaaa gaggtgattc caggcgtggt cacggagacc
     1381 ctggacctgg cactcgagac cttccagaag aggctgcgcg gccagaagat gctgccgctg
     1441 ctgtcccagc gccgcttcgt gctcctgcac aacggcgagg cagacctgtg gccgcgcccc
     1501 gggggctccc gcagcgtccc ccgcccgccg tcgccgccgc ccgccgcgtc cttcgctctc
     1561 cgcgccgccg gcaggccggg cgcgcgcagg cccgcaccac gccggggccc cagcggcgcg
     1621 cccgggcggc cctcctccgc acagcggcgc ccccggcctc cgacccccag ccccgacggc
     1681 gcccagggcg gggaccccga gaccccgggc ggcggggagc cggcgcggga gccttccccg
     1741 gggtcgtcgg aggaggagcg caagaacgcg ggccaccggc gccctcgcgg gggcctataa
     1801 aagctgtttt ttgttacaaa cgcgtcctct gcagctggtc cgcgggttcc ccgcacaccg
     1861 ggccccgaga ccccctccgg cagcctccct gcgccccgtg agccgctact ccactgctgg
     1921 ggcccgtccc tggggggaca cgagggtcga gggatggggg tgtctgcccg gcaggaaagg
     1981 gagatgaggc cccccgcgcc cctgactctg cccaccgtgg gctgcttcca gttcctgggc
     2041 cccctcacct acggccctcg tccacccgcc ctgcaatctc acaacccacc tgacctctac
     2101 tgcctgggtc ggtggtcccc aggaaaggcg cccagtgtcc cccagtcaag ggtctagagc
     2161 ctcacggacc cctctcgatt cccataggaa ggcttcctca cacccaacat gttcctccga
     2221 gctgcggtcc ccgccctgcc caggctcagc tcctttctgg gccttcggag caccagtgcc
     2281 ctgagctctc ctccaccggc ggcgcccgga ctctacagca ggcagagccc tgcagaggcc
     2341 gggaggaccc aggctgtggg tgaccggcat atggtcttgg caggacagcg ccctgaggga
     2401 agtgctgagc cagcaggtcc ctgtgtgccc tgtgtgccca gcctcgaggc tactaggaga
     2461 ttcagggcct ctcatgtgtc cacacccccg ccaccaagca tcctggggca gccataatcc
     2521 cctctccacc ctggccttcc ccaccccctc ccccagtcca gaccccaggg tctgggcagc
     2581 cccatcccta ggcccaccct agctgtcaca ccgtccccct gccctcacct ctccaaacgg
     2641 tcaccgccaa gccacatgcc ctcctcctgc cctgcacacc ctcgctcagt acttcagcgg
     2701 gctccaccaa ggggggaggg gccgccggga ccgctgctgt gccctgcatt ggcatgctgg
     2761 tgggacccga ggggcaacga cctgtcctcc cccgctgccc ccccactcct ttcccaggga
     2821 tgcaacagcc acagcaccgc tagagggcgg cgggcactga ccgccgagcc tccggccagt
     2881 ccactggaag tatgcagcca gggagccagg gagccaggga gccagggaga gaagagccag
     2941 atggaaagcg gggctcagag aggtagagtc agtcctccca ggtcacagag ccggtgaggg
     3001 gcccaggcca gggctcacct gccttgtcac tcacagccca cccaccctcc caccaccact
     3061 gcaccccctc gtcgtcctgc tgctgtggcc cagagtgtgg ggtccccagg ccaggcgcac
     3121 acttgtcact gggtgactgg ggtctgggaa cactgagtcc cctcccagtg cgtctggtgg
     3181 tctctccatg aggggtcaag cccagcactg cgtcctctgc agcctgctgg ccagctctgt
     3241 gcccgaagac ccatctccat cagggagagg tggcctcctg gtgggcaggg cacacccagg
     3301 tctttgtaaa acccacgcct gtgtctttgg ggtcaggacc actttccttg ctgacatcca
     3361 ggacactaca cagccatgtc acctcggtgt caccccctta actcgcccga ggggcctcta
     3421 gactccatgt ctcatctctg aggcctctcc caccccctcc tcacatcctg cccacggggc
     3481 ctctgcccac gctgtcctgt ggctcacgat gtggcccgtg gtggcagcag tgctgctcca
     3541 ggaccttcca gctctcctcc agcctctgcg ggactgttcc cctgctggtc aaggtggtgt
     3601 ctacggaggc gacccgatcc tcagggagca gctgtccctg ccgcctccat catccctggg
     3661 ccctgagtgc gtgcaatggc ccacagggac tgtggtgggc taagaagtgc atgtcctgac
     3721 tggacctccg tccccggggt cccccaaagc cctggactgt ctgctgctct tgggcacctg
     3781 gttaccccaa gagcctggag ttcaataaat gaggtttcct tgc
//
LOCUS       XM_032609604            3929 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf167 homolog
            (C1H1orf167), mRNA.
ACCESSION   XM_032609604
VERSION     XM_032609604.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 27% of CDS bases
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               VOSU01000011.1     9184043-9184206
            165-296             VOSU01000011.1     9188048-9188179
            297-528             VOSU01000011.1     9188954-9189185
            529-529             "N"                1-1
            530-1551            VOSU01000011.1     9189186-9190207
            1552-1842           VOSU01000011.1     9190795-9191085
            1843-1998           VOSU01000011.1     9192511-9192666
            1999-2075           VOSU01000011.1     9196203-9196279
            2076-2145           VOSU01000011.1     9198402-9198471
            2146-2146           "N"                1-1
            2147-2262           VOSU01000011.1     9198472-9198587
            2263-2426           VOSU01000011.1     9199106-9199269
            2427-2490           VOSU01000011.1     9201149-9201212
            2491-2645           VOSU01000011.1     9201424-9201578
            2646-2661           VOSU01000011.1     9203244-9203259
            2662-2820           VOSU01000011.1     9204297-9204455
            2821-2821           "N"                1-1
            2822-2884           VOSU01000011.1     9204456-9204518
            2885-2983           VOSU01000011.1     9204826-9204924
            2984-3929           VOSU01000011.1     9205244-9206189
FEATURES             Location/Qualifiers
     source          1..3929
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3929
                     /gene="C1H1orf167"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 32% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116742280"
     CDS             1..3264
                     /gene="C1H1orf167"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:2776..2778,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     C1orf167 homolog"
                     /protein_id="XP_032465495.1"
                     /db_xref="GeneID:116742280"
                     /translation="MATRIPERARAQTPAAKFSARVEAQGAPSMRQPRTGQARSLMSP
                     PPLPCLHLPGATGCGVDQGHCHPGFALEPMELRPDTSHKENVPPQAGHPPGAPHSTDH
                     QVLPQDITVLFLEQWRLRKSLASTHGRWVPVGQAESRGAATTPSPGAALCQEPCRVQS
                     NLTSPSLGLALRDTPGXLTNSSFRQPSNLPPLAGRPQRRAQAFAVQQTDLSIRETSVA
                     EWGRRLWSHSMPGGSPLPRGPLASPASRPRWSRLLSTNSPCPDIGPAAGLGPLEGHIW
                     PDPRSQCGLGGWTSRLVEEPLILEDLAAPAQSRIRAPSQVAIHQLLASVQRLEREAVR
                     LRCQAPWEPPGPVQQESWTRAGQILPAHPQPSQPVLASWDERRKHSQGFRETAGFPEA
                     PGIQDGISDSQASSKPASLETTLEMLPGVALDPEQGVLPGHPVRRGEKCSTGTTYGRG
                     QREDPLLPQGAGSREARLCSSALSSSAQAILPGREGGDRTPREQVGREEERPASGLPD
                     MAPVRSALQATRVLLSPQLSLGLGTGPIPWSAWSVPSRQWLSRCFRACRHWAQRRRAM
                     AAAVALGCRQLLRRDLRAPRWTLWLREAQLEAVWGRHTQALLARTFQKWRNLIQQQKK
                     GWLHIQAGPGPPSSGGGQDRDPSGRKPVVDTAWRSRWSGTPQAWCSPAADAAWVSPLD
                     TQCQRAWLCRCFGAWQRFAQRGTRYRDPMANHRXGTLRMCLQQWVQTKQLQASDGAKV
                     TQLPLCWREAGEQVPLGGAAAHGLVVVAQAQALPQEQGRGSLQEAGRKLALHRALLLW
                     RTQLSQRQWADSFFEGVQQRALRHSLRGWRLRASPAPALLEAFRVSLCGQPGRRQQGQ
                     HLLLWQAQAQQSRGAARRHQHTLQRRVYLAQARGSALFPGHEGVVMPFAVRNTHQGLC
                     PQEEVPAALAPXGTASPAPGFPAGQAXGSCMAALGSRSGDGVADADAAQAVAPETGLA
                     TVGPAAAGVSAITAARRLGPFPGSQACASGPGQREGPPLPSGAEGAGPRSSSSTDSTH
                     PGGSQRASCSPIPGQRLAARGLRGRASSSGRPRSRQEATRAPVLGGLGVKQGAQQQL"
ORIGIN      
        1 atggccaccc gcatccccga gcgcgcacgc gcacagaccc ccgccgccaa gttctcagct
       61 cgcgtggagg cgcagggggc accctccatg cggcagcccc gcactgggca ggcgcgatct
      121 ttaatgtctc cgcccccgct cccctgcctc cacctgcctg gagcgaccgg ctgcggtgtg
      181 gaccaaggtc actgccaccc tggctttgcc ctggagccca tggagctgag acctgacacc
      241 agccacaagg agaatgtgcc cccccaggcc ggccaccccc ctggggcccc tcacagcact
      301 gaccaccaag ttctccccca ggacataact gtcctctttt tagagcaatg gagactccgg
      361 aagagcttgg ccagtacaca tggccggtgg gtgcccgtgg gccaggccga gagcaggggg
      421 gctgccacca caccatcccc gggagcagcg ctgtgccagg agccctgccg tgtccagagc
      481 aacctgacca gccccagcct gggcctcgcc ctgagggaca cgcccggcna gctgaccaac
      541 tcaagcttcc gacagccgag caacttgccg cccctggccg ggaggcccca aagaagagcc
      601 caggcgtttg ccgtccagca gaccgacctg agcatcaggg agacgagcgt ggctgagtgg
      661 ggacgtcgcc tctggtcgca cagcatgcct gggggaagcc ctctaccccg agggccactg
      721 gcttccccag cctcccgccc gaggtggtcc cggctgctgt ccaccaatag cccctgccca
      781 gacattgggc ctgctgcagg cctgggcccg ctcgaagggc acatatggcc agaccccaga
      841 tcccagtgtg gcctgggggg ctggacctcc aggctcgtgg aggaacccct catcctggag
      901 gacctggctg cccctgccca gagccggatt agggctccgt cccaagttgc cattcaccag
      961 ctgctggcct ctgtgcaacg cctggagcgt gaggcagtcc gtctcaggtg ccaggcaccc
     1021 tgggaacccc caggccctgt gcagcaggag tcctggacca gagctggcca gatactccct
     1081 gctcaccccc agcccagcca gcctgtgctt gcttcctggg atgagaggag gaaacattcc
     1141 caaggtttca gggaaactgc aggtttcccg gaagcaccag ggatccagga tggtatctca
     1201 gactctcagg caagcagcaa gcctgcatca ctggagacta ctttggagat gcttcccggg
     1261 gttgcccttg accctgagca aggggtcctt cctggccacc ctgtaagacg aggagagaag
     1321 tgctccacag ggactacata cggcagggga cagagggagg accccctgct ccctcaaggg
     1381 gcaggcagca gggaggccag actctgctct tcagccttgt ccagttcagc ccaggccatc
     1441 ctccctgggc gggaaggagg ggacaggacc ccgcgggagc aggtcggcag ggaagaagag
     1501 aggccggctt ctggtctgcc agacatggcc cccgtgagga gtgccctgca ggcgacgcgg
     1561 gtgctgctga gcccccagct ctccctggga ctggggactg ggcccatccc ctggtcagcc
     1621 tggtctgtcc ccagccggca gtggctgtcc agatgtttca gagcgtgtcg gcactgggcg
     1681 cagaggcggc gggcaatggc agcggccgtg gcgctgggct gccggcagct gttgcgcagg
     1741 gacctacggg cgccgcggtg gacactgtgg ctccgggagg cccagctgga ggcggtgtgg
     1801 ggacgacaca cgcaggccct gctggcgcgg accttccaaa agtggagaaa cttgattcag
     1861 cagcagaaaa aagggtggct tcacatccag gctgggccag gacccccatc ctctggggga
     1921 ggccaggacc gagacccctc aggaaggaag ccagtggtgg acaccgcctg gagaagcagg
     1981 tggtctggga caccccaggc atggtgctct cctgctgcag atgcggcctg ggtgtcccca
     2041 ctggacaccc agtgccagag ggcctggctc tgcaggtgct ttggggcctg gcagcggttc
     2101 gcgcaaagag ggacccggta ccgggacccc atggccaacc acaggncagg gaccctgagg
     2161 atgtgcctgc agcagtgggt gcagacgaag cagctccagg cctcagatgg ggcgaaggtg
     2221 acccagctgc ccctttgttg gcgggaggca ggtgagcaag tgcccctggg gggggccgca
     2281 gcccacggcc tggtggtggt ggcccaggcc caggcgctgc cccaggagca aggccggggc
     2341 tccctgcagg aggccggccg gaagctggcc ctccaccggg cgctgctgct ctggaggacg
     2401 cagctctccc agcgccagtg ggcggactcc ttcttcgagg gcgtgcagca gcgggcgctg
     2461 cgtcacagcc tgaggggttg gcgcctgagg gcttccccgg cccccgccct cctggaggcg
     2521 ttccgggtga gcttatgtgg gcagcctggg cggcggcagc aggggcagca cctcctgctc
     2581 tggcaggcgc aggcccagca gtcccggggc gcggcaaggc ggcaccagca cacccttcag
     2641 cggcgggtgt acctggcaca ggcccgtggc tctgccctct ttcctggcca tgaaggggtc
     2701 gtgatgccct ttgctgtcag gaacacacac cagggcctct gccctcagga ggaagtacct
     2761 gcagcgctgg cgccttgagg cactgcttcg ccggctccgg ggttccctgc aggccaggcc
     2821 ntgggcagct gcatggcagc gctgggtagc cgctcagggg acggagtagc tgacgccgac
     2881 gctgctcagg cagtggcacc tgagacgggc ctggcgacgg tgggccctgc ggctgcaggt
     2941 gtctcagcga ttacagcagc aagacggctg ggtccattcc caggatcgca ggcctgtgcg
     3001 tctggcccgg ggcagaggga agggcctcct cttccctcgg gggcagaagg agctgggccc
     3061 cggagttcct ccagcactga cagcacacac ccaggaggga gccaaagagc ttcctgctcc
     3121 ccgattccag gccagcgtct ggcagccagg ggcctgaggg gcagagccag cagcagtggg
     3181 aggcctcgga gcaggcagga agccaccaga gcccctgtgc ttggtggact tggggtgaag
     3241 cagggggccc agcagcagct gtgacctgtt cccctggaaa ggaaagcaga tcggagcccc
     3301 acccacctga ggagtacagg ctcaggcaca aggcgctcag gccaagagct ctgaaggaca
     3361 ataaaacgcc ctccttagcc ccggctgctt ctctctgtct ctcctaaagg ctgccccctg
     3421 ccccagccaa ccagcccctc tgacctgctt cctctgccgt caggccgccc tgtggacaac
     3481 cggccccctc tccatccccc accgcccccc ggagccggtg aagctccgca agcaggggct
     3541 gggacaggga acagcctgcg tgcacgagtc agtcacagcc cctgggcggt ggggcctgag
     3601 ggctgatgcc tggggagcag tgccagacag acagcttccg ggacagggtg catggagggg
     3661 agggagcggc gggcagaagg aggtcctgcc cgaaaaataa gccaggaaga agtcagtcct
     3721 gctcgggcca acctcacttt cgccctcaat ggtaacaggc agggcatccc ttcacccctc
     3781 agagccaggg gagaaaaggg aaggccaagg gctccaccac gcacaaaggt tcagacacct
     3841 ttaaccctta agaggcactt tctctctcga gcatgtgagg agacaactga gggtaagctg
     3901 tgacaaagca agagagaggc atggacata
//
LOCUS       XM_032609609            1590 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized protein C1orf54 homolog
            (LOC116742284), transcript variant X1, mRNA.
ACCESSION   XM_032609609
VERSION     XM_032609609.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1590
                     /gene="LOC116742284"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116742284"
     CDS             28..1530
                     /gene="LOC116742284"
                     /codon_start=1
                     /product="circadian-associated transcriptional
                     repressor-like isoform X1"
                     /protein_id="XP_032465500.1"
                     /db_xref="GeneID:116742284"
                     /translation="MDVLFVAILAVPLILGQEYEDEEGLEEDDYYQVVYYYTVTPNYD
                     DFGANFTVDYSMFESENRLNKWDKEVMEAVETTISRETDPADHQKPVTEKPVTMEPLQ
                     VPMFGYSGSCSPAPASEPMDSPSSVSSYSLYSSFSTSPVNSDSGFPSDSEREDKWAHG
                     PRPDTVGQRGGSRPSPGPIRCRQRPKVSSKQPTASHSEQRGLASSMSGSGVKRSRGGE
                     LETSLNIQGCTTAGDLLFAQKCKELRGFIPPLTDLLNGLKMGRFERGLSSFQQSVAMD
                     RIQRIVGVLQKPQMGERYLGTLLQVEGMLKTWFPHIAAQKSSLHSQLTKHSPGHHSYP
                     AASSPALSVEKMDQTQLGQLILKPKQPWHLTEWPAMNLTWIHTTPICNPPLSSPGTIS
                     FSHGPLGTGTSIGVILFLQHGVQPFTHSAPTSPVPSTTTASPVIPGDPKQLSGEGPCC
                     HNLPVTLPSDWSCTPSPPGLPTMTREMTMGDLQQMRSHPSVAPDVHPLNP"
     misc_feature    28..381
                     /gene="LOC116742284"
                     /note="Domain of unknown function (DUF4634); Region:
                     DUF4634; pfam15465"
                     /db_xref="CDD:434736"
     misc_feature    652..1479
                     /gene="LOC116742284"
                     /note="Circadian-associated transcriptional repressor;
                     Region: Ciart; pfam15673"
                     /db_xref="CDD:464794"
ORIGIN      
        1 agtgatagca ctagtgcaga atccagaatg gatgtcctct ttgtagccat ccttgctgtg
       61 ccactcatcc tgggacaaga atatgaggat gaagaaggac tggaagagga tgactattat
      121 caggtggtct attattacac agtcaccccc aactatgatg actttggtgc aaacttcact
      181 gttgattact ctatgtttga gtcagagaac aggctgaaca agtgggataa ggaggtaatg
      241 gaagcagtag agactaccat tagtcgtgaa acagaccctg cagaccatca gaagcctgta
      301 acagagaaac cagtgacaat ggaaccattg caggtcccga tgtttgggta ctccggaagc
      361 tgctctccag cccctgcttc tgaacccatg gattctccat ctagcgtttc ttcctactct
      421 ctttattcct ctttttccac ctccccagtg aacagtgact ctggcttccc ctccgatagt
      481 gagagggagg acaagtgggc ccatggcccc aggccagaca ctgttggtca gaggggaggt
      541 tctcggccca gccctggtcc tatccgctgc aggcaacgac ccaaggtttc cagtaagcaa
      601 cctacagcat ctcattcgga acagcggggc ttggcttctt ctatgtcagg atctggggtc
      661 aaaagatcaa gaggtggtga attggagacc agtctaaaca tccagggttg taccacagca
      721 ggagacctgc tctttgctca gaagtgtaaa gagctccgag gattcatacc ccctctcaca
      781 gacctactga atggactgaa gatgggtcga tttgagagag ggttgagcag tttccagcag
      841 agcgtggcaa tggacaggat ccagcgtata gtaggtgttt tgcagaagcc acagatggga
      901 gagcgttatc taggaaccct gctacaggta gaaggaatgt taaagacttg gtttcctcat
      961 atagctgccc agaagtcatc attgcatagt cagctgacca agcattctcc aggccaccac
     1021 agttatccag ctgcttcctc tcctgcactt tctgtggaaa agatggacca gacacagcta
     1081 ggacagctaa tattgaaacc aaagcagcct tggcacctca ctgaatggcc agctatgaac
     1141 ctcacttgga tccacactac tccaatttgc aatccccctc tcagttcccc aggtaccatc
     1201 tcctttagcc atggtccttt aggcactgga accagcatcg gtgtcatcct tttcctccag
     1261 catggagtac agcccttcac ccactcagcc ccaacctctc cagttccatc tactactaca
     1321 gcatctcctg tcatccctgg tgatcctaag caactatctg gagaggggcc ttgttgccac
     1381 aatttgccag taactctgcc atcagactgg agctgtaccc catcccctcc tggtctaccc
     1441 accatgacca gagagatgac catgggagac ctacaacaga tgagaagcca cccttctgtt
     1501 gctcctgatg tccatcctct caatccctaa tgcaggactt gagactgtag tttctaattt
     1561 gtgtaaatat atgtctctct atatactttt
//
LOCUS       XM_032609620            1511 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized protein C1orf54 homolog
            (LOC116742284), transcript variant X2, mRNA.
ACCESSION   XM_032609620
VERSION     XM_032609620.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1511
                     /gene="LOC116742284"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742284"
     CDS             261..1451
                     /gene="LOC116742284"
                     /codon_start=1
                     /product="circadian-associated transcriptional
                     repressor-like isoform X2"
                     /protein_id="XP_032465511.1"
                     /db_xref="GeneID:116742284"
                     /translation="MFGYSGSCSPAPASEPMDSPSSVSSYSLYSSFSTSPVNSDSGFP
                     SDSEREDKWAHGPRPDTVGQRGGSRPSPGPIRCRQRPKVSSKQPTASHSEQRGLASSM
                     SGSGVKRSRGGELETSLNIQGCTTAGDLLFAQKCKELRGFIPPLTDLLNGLKMGRFER
                     GLSSFQQSVAMDRIQRIVGVLQKPQMGERYLGTLLQVEGMLKTWFPHIAAQKSSLHSQ
                     LTKHSPGHHSYPAASSPALSVEKMDQTQLGQLILKPKQPWHLTEWPAMNLTWIHTTPI
                     CNPPLSSPGTISFSHGPLGTGTSIGVILFLQHGVQPFTHSAPTSPVPSTTTASPVIPG
                     DPKQLSGEGPCCHNLPVTLPSDWSCTPSPPGLPTMTREMTMGDLQQMRSHPSVAPDVH
                     PLNP"
     misc_feature    573..1400
                     /gene="LOC116742284"
                     /note="Circadian-associated transcriptional repressor;
                     Region: Ciart; pfam15673"
                     /db_xref="CDD:464794"
ORIGIN      
        1 acccgacagt cggagtagga gctggagaca gcctgggctg agccgaccga cacaggtgag
       61 gagactcagg tcagggagcg atccgcgcag gaggatcaga cccggtggga gtgggcttag
      121 ggactcaacg cggatattgg tattgagagg gatcgcatca cgtgtcaggc gcgactggag
      181 atggtccggc gcagggatcc tgatcagaaa gattggcaag aggagggagg ttgctgccgg
      241 gtccctagtt gcaggtcccg atgtttgggt actccggaag ctgctctcca gcccctgctt
      301 ctgaacccat ggattctcca tctagcgttt cttcctactc tctttattcc tctttttcca
      361 cctccccagt gaacagtgac tctggcttcc cctccgatag tgagagggag gacaagtggg
      421 cccatggccc caggccagac actgttggtc agaggggagg ttctcggccc agccctggtc
      481 ctatccgctg caggcaacga cccaaggttt ccagtaagca acctacagca tctcattcgg
      541 aacagcgggg cttggcttct tctatgtcag gatctggggt caaaagatca agaggtggtg
      601 aattggagac cagtctaaac atccagggtt gtaccacagc aggagacctg ctctttgctc
      661 agaagtgtaa agagctccga ggattcatac cccctctcac agacctactg aatggactga
      721 agatgggtcg atttgagaga gggttgagca gtttccagca gagcgtggca atggacagga
      781 tccagcgtat agtaggtgtt ttgcagaagc cacagatggg agagcgttat ctaggaaccc
      841 tgctacaggt agaaggaatg ttaaagactt ggtttcctca tatagctgcc cagaagtcat
      901 cattgcatag tcagctgacc aagcattctc caggccacca cagttatcca gctgcttcct
      961 ctcctgcact ttctgtggaa aagatggacc agacacagct aggacagcta atattgaaac
     1021 caaagcagcc ttggcacctc actgaatggc cagctatgaa cctcacttgg atccacacta
     1081 ctccaatttg caatccccct ctcagttccc caggtaccat ctcctttagc catggtcctt
     1141 taggcactgg aaccagcatc ggtgtcatcc ttttcctcca gcatggagta cagcccttca
     1201 cccactcagc cccaacctct ccagttccat ctactactac agcatctcct gtcatccctg
     1261 gtgatcctaa gcaactatct ggagaggggc cttgttgcca caatttgcca gtaactctgc
     1321 catcagactg gagctgtacc ccatcccctc ctggtctacc caccatgacc agagagatga
     1381 ccatgggaga cctacaacag atgagaagcc acccttctgt tgctcctgat gtccatcctc
     1441 tcaatcccta atgcaggact tgagactgta gtttctaatt tgtgtaaata tatgtctctc
     1501 tatatacttt t
//
LOCUS       XM_032609629            1304 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized protein C1orf54 homolog
            (LOC116742284), transcript variant X3, mRNA.
ACCESSION   XM_032609629
VERSION     XM_032609629.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1304
                     /gene="LOC116742284"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742284"
     CDS             54..1244
                     /gene="LOC116742284"
                     /codon_start=1
                     /product="circadian-associated transcriptional
                     repressor-like isoform X2"
                     /protein_id="XP_032465520.1"
                     /db_xref="GeneID:116742284"
                     /translation="MFGYSGSCSPAPASEPMDSPSSVSSYSLYSSFSTSPVNSDSGFP
                     SDSEREDKWAHGPRPDTVGQRGGSRPSPGPIRCRQRPKVSSKQPTASHSEQRGLASSM
                     SGSGVKRSRGGELETSLNIQGCTTAGDLLFAQKCKELRGFIPPLTDLLNGLKMGRFER
                     GLSSFQQSVAMDRIQRIVGVLQKPQMGERYLGTLLQVEGMLKTWFPHIAAQKSSLHSQ
                     LTKHSPGHHSYPAASSPALSVEKMDQTQLGQLILKPKQPWHLTEWPAMNLTWIHTTPI
                     CNPPLSSPGTISFSHGPLGTGTSIGVILFLQHGVQPFTHSAPTSPVPSTTTASPVIPG
                     DPKQLSGEGPCCHNLPVTLPSDWSCTPSPPGLPTMTREMTMGDLQQMRSHPSVAPDVH
                     PLNP"
     misc_feature    366..1193
                     /gene="LOC116742284"
                     /note="Circadian-associated transcriptional repressor;
                     Region: Ciart; pfam15673"
                     /db_xref="CDD:464794"
ORIGIN      
        1 gtaggagctg gagacagcct gggctgagcc gaccgacaca gttgcaggtc ccgatgtttg
       61 ggtactccgg aagctgctct ccagcccctg cttctgaacc catggattct ccatctagcg
      121 tttcttccta ctctctttat tcctcttttt ccacctcccc agtgaacagt gactctggct
      181 tcccctccga tagtgagagg gaggacaagt gggcccatgg ccccaggcca gacactgttg
      241 gtcagagggg aggttctcgg cccagccctg gtcctatccg ctgcaggcaa cgacccaagg
      301 tttccagtaa gcaacctaca gcatctcatt cggaacagcg gggcttggct tcttctatgt
      361 caggatctgg ggtcaaaaga tcaagaggtg gtgaattgga gaccagtcta aacatccagg
      421 gttgtaccac agcaggagac ctgctctttg ctcagaagtg taaagagctc cgaggattca
      481 taccccctct cacagaccta ctgaatggac tgaagatggg tcgatttgag agagggttga
      541 gcagtttcca gcagagcgtg gcaatggaca ggatccagcg tatagtaggt gttttgcaga
      601 agccacagat gggagagcgt tatctaggaa ccctgctaca ggtagaagga atgttaaaga
      661 cttggtttcc tcatatagct gcccagaagt catcattgca tagtcagctg accaagcatt
      721 ctccaggcca ccacagttat ccagctgctt cctctcctgc actttctgtg gaaaagatgg
      781 accagacaca gctaggacag ctaatattga aaccaaagca gccttggcac ctcactgaat
      841 ggccagctat gaacctcact tggatccaca ctactccaat ttgcaatccc cctctcagtt
      901 ccccaggtac catctccttt agccatggtc ctttaggcac tggaaccagc atcggtgtca
      961 tccttttcct ccagcatgga gtacagccct tcacccactc agccccaacc tctccagttc
     1021 catctactac tacagcatct cctgtcatcc ctggtgatcc taagcaacta tctggagagg
     1081 ggccttgttg ccacaatttg ccagtaactc tgccatcaga ctggagctgt accccatccc
     1141 ctcctggtct acccaccatg accagagaga tgaccatggg agacctacaa cagatgagaa
     1201 gccacccttc tgttgctcct gatgtccatc ctctcaatcc ctaatgcagg acttgagact
     1261 gtagtttcta atttgtgtaa atatatgtct ctctatatac tttt
//
LOCUS       XM_032609639            1120 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized protein C1orf54 homolog
            (LOC116742284), transcript variant X4, mRNA.
ACCESSION   XM_032609639
VERSION     XM_032609639.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1120
                     /gene="LOC116742284"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742284"
     CDS             77..475
                     /gene="LOC116742284"
                     /codon_start=1
                     /product="uncharacterized protein C1orf54 homolog isoform
                     X3"
                     /protein_id="XP_032465530.1"
                     /db_xref="GeneID:116742284"
                     /translation="MDVLFVAILAVPLILGQEYEDEEGLEEDDYYQVVYYYTVTPNYD
                     DFGANFTVDYSMFESENRLNKWDKEVMEAVETTISRETDPADHQKPVTEKPVTMEPQS
                     PDLNNAVSSLQSPGALLLSWALVQGGMYFM"
     misc_feature    77..466
                     /gene="LOC116742284"
                     /note="Domain of unknown function (DUF4634); Region:
                     DUF4634; pfam15465"
                     /db_xref="CDD:434736"
ORIGIN      
        1 cagaaggcgg ggtaagtttg gtgggaaacg ctgtaatttc cttttttact ttcaaggcac
       61 tagtgcagaa tccagaatgg atgtcctctt tgtagccatc cttgctgtgc cactcatcct
      121 gggacaagaa tatgaggatg aagaaggact ggaagaggat gactattatc aggtggtcta
      181 ttattacaca gtcaccccca actatgatga ctttggtgca aacttcactg ttgattactc
      241 tatgtttgag tcagagaaca ggctgaacaa gtgggataag gaggtaatgg aagcagtaga
      301 gactaccatt agtcgtgaaa cagaccctgc agaccatcag aagcctgtaa cagagaaacc
      361 agtgacaatg gaaccacaga gtccagatct gaacaatgct gtatccagtc tgcagagtcc
      421 tggtgcactc ctcctgtcct gggccctcgt tcaggggggg atgtatttca tgtagaagga
      481 gaggaaaggc tgctacgact cattggatgg ggatttggga agaggaaagt ggaagattaa
      541 ataaataaat gaagtaatct ggttactctc tactccttta tgagggtcag ttctaaagct
      601 gcaacactga agagagcacc aggatatagg tgtgtgaagg gtagattaga aagggagtta
      661 ggcgacagta gagttagagg gaattattag ggctgtgaaa aaataaaccc tgaaattttg
      721 ggaagaatgg agaaaaatac ccacaaacaa caggtttatt cacagcctat aattccctct
      781 aattctactg ttttgcttta tcatatatgg tgttgagaca gtatatctgg agaaagaaag
      841 ttgaagtgga acccttttta taaaataagc acattgttaa acatatgtaa aatatcaaaa
      901 actacttaga atagattttt aaaattcaca ccctccctcc cttatctccc ccctccagcc
      961 cctaactatg taccttttca gttagtaatt aaggcattcg aggacagact gtttttttct
     1021 ttttataaat ttatttattt atttttggct gctttgggtc tttgttgctg caggctttct
     1081 ctagttgcgg cgagcgggtg ctattcttgg ttgcggtgcg
//
LOCUS       XM_032609646            1117 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized protein C1orf54 homolog
            (LOC116742284), transcript variant X5, mRNA.
ACCESSION   XM_032609646
VERSION     XM_032609646.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1117
                     /gene="LOC116742284"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742284"
     CDS             77..472
                     /gene="LOC116742284"
                     /codon_start=1
                     /product="uncharacterized protein C1orf54 homolog isoform
                     X4"
                     /protein_id="XP_032465537.1"
                     /db_xref="GeneID:116742284"
                     /translation="MDVLFVAILAVPLILGQEYEDEEGLEEDDYYQVVYYYTVTPNYD
                     DFGANFTVDYSMFESENRLNKWDKEVMEAVETTISRETDPADHQKPVTEKPVTMEPSP
                     DLNNAVSSLQSPGALLLSWALVQGGMYFM"
     misc_feature    77..463
                     /gene="LOC116742284"
                     /note="Domain of unknown function (DUF4634); Region:
                     DUF4634; pfam15465"
                     /db_xref="CDD:434736"
ORIGIN      
        1 cagaaggcgg ggtaagtttg gtgggaaacg ctgtaatttc cttttttact ttcaaggcac
       61 tagtgcagaa tccagaatgg atgtcctctt tgtagccatc cttgctgtgc cactcatcct
      121 gggacaagaa tatgaggatg aagaaggact ggaagaggat gactattatc aggtggtcta
      181 ttattacaca gtcaccccca actatgatga ctttggtgca aacttcactg ttgattactc
      241 tatgtttgag tcagagaaca ggctgaacaa gtgggataag gaggtaatgg aagcagtaga
      301 gactaccatt agtcgtgaaa cagaccctgc agaccatcag aagcctgtaa cagagaaacc
      361 agtgacaatg gaaccaagtc cagatctgaa caatgctgta tccagtctgc agagtcctgg
      421 tgcactcctc ctgtcctggg ccctcgttca gggggggatg tatttcatgt agaaggagag
      481 gaaaggctgc tacgactcat tggatgggga tttgggaaga ggaaagtgga agattaaata
      541 aataaatgaa gtaatctggt tactctctac tcctttatga gggtcagttc taaagctgca
      601 acactgaaga gagcaccagg atataggtgt gtgaagggta gattagaaag ggagttaggc
      661 gacagtagag ttagagggaa ttattagggc tgtgaaaaaa taaaccctga aattttggga
      721 agaatggaga aaaataccca caaacaacag gtttattcac agcctataat tccctctaat
      781 tctactgttt tgctttatca tatatggtgt tgagacagta tatctggaga aagaaagttg
      841 aagtggaacc ctttttataa aataagcaca ttgttaaaca tatgtaaaat atcaaaaact
      901 acttagaata gatttttaaa attcacaccc tccctccctt atctcccccc tccagcccct
      961 aactatgtac cttttcagtt agtaattaag gcattcgagg acagactgtt tttttctttt
     1021 tataaattta tttatttatt tttggctgct ttgggtcttt gttgctgcag gctttctcta
     1081 gttgcggcga gcgggtgcta ttcttggttg cggtgcg
//
LOCUS       XM_032609661            1021 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf158 homolog
            (C1H1orf158), mRNA.
ACCESSION   XM_032609661
VERSION     XM_032609661.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1021
                     /gene="C1H1orf158"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 Proteins"
                     /db_xref="GeneID:116742296"
     CDS             211..801
                     /gene="C1H1orf158"
                     /codon_start=1
                     /product="uncharacterized protein C1orf158 homolog"
                     /protein_id="XP_032465552.1"
                     /db_xref="GeneID:116742296"
                     /translation="MQFLTAVSPQSFSTPSWKIEAKYSTRVLTGNWLEERKTFTKATE
                     KTPQTIYRKEYIPFPGHRPDQISRWYSKRRVEGLPYKHLITHHQEPSCHHLISTYDDH
                     YNRHNYNPSLPQLRTWDRHKLLWLPEKADFPLLAPPTNYGLYEQLKQRWLPSPEATWR
                     ERIYISSCPRPPSGAMSQREHAIPGPPPRLQPVPHS"
ORIGIN      
        1 aagatcacat cacctctccc tggaggctga aagtggactc tcaaggccct tttattctgt
       61 gaagttagta gagtttcatc tactaccact ccttctgact gatgaaaaga aaaaaaaaaa
      121 ggcatcccaa actcagcaac ttcataacat ctcccacccc cgaaacctta aactgtgtta
      181 agtcaaagaa gcttggggca aatccttacc atgcagtttc ttactgcagt aagtccacag
      241 tcattctcca ctccgagctg gaagattgag gccaagtatt caaccagagt gctcactgga
      301 aactggttgg aggagaggaa gacgttcacc aaagccactg agaaaacacc ccagaccatt
      361 tatagaaaag agtatatccc cttcccaggc cacagaccgg atcagatctc caggtggtac
      421 agcaagagga gagttgaggg gctcccgtac aaacacctga tcacccacca ccaggagccc
      481 tcgtgccacc atctgatcag cacgtacgac gaccattaca accggcataa ctataaccca
      541 agcttgcccc agctccgcac gtgggataga cataagttgc tgtggctccc agagaaagct
      601 gacttccccc ttctcgctcc ccctacaaac tacggactct atgagcagtt gaagcagaga
      661 tggctcccgt cacccgaagc cacctggagg gagcgcattt acatttcttc ctgccccaga
      721 ccaccttctg gtgctatgtc gcagcgggaa catgcaattc cggggcctcc ccctcgcctg
      781 cagcctgtcc cacactcctg agaactgcca cccgatcaag cacaggtgga atcacatgga
      841 gacccaccac accgtcggac ctgccagaca gcaggcggct gcacatactt ccagagtttt
      901 aaatcaggcc catctgagtg gcccttggaa tcatggtctg tgttttatac tttctacccc
      961 tcctccaaac ccacaggttc ctttcttttc cagcccacaa ataaagccct ttgacacaag
     1021 g
//
LOCUS       XR_004346408             559 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116742300
            (LOC116742300), ncRNA.
ACCESSION   XR_004346408
VERSION     XR_004346408.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..559
                     /gene="LOC116742300"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742300"
     ncRNA           1..559
                     /ncRNA_class="lncRNA"
                     /gene="LOC116742300"
                     /product="uncharacterized LOC116742300"
                     /db_xref="GeneID:116742300"
ORIGIN      
        1 aaagaagcct gcctcatcta tgggaccaga aaacttttca aaagctgcat aatgatgctg
       61 attagaggga gttttaaatc aatcatgtag ggttgttcag tgagacggca aactgtcgca
      121 tggaaagggg aaggagaacc tgaattaaca gatatactgg agtcaaggca caaggatggg
      181 ggttttgaag aagcaatcag ttcacaccag tcctaagaca cgaatgatct gtgagacttc
      241 tctgcacgta acccagaacg gtacacccgc ccgggaggga gagcgcgagc tccggggtgg
      301 accggcaagt ggaggcggcc agaggaaggg accaagctga cagcttcgca gagcgttggc
      361 ggcgggtgtg agaccgggac ccgcaaccgc cacggctaca gggctcgagc cggaccctcc
      421 ggtggcacag ggctcccgag gtgggaggat gctccctgcc cactgcggga gcctccctcc
      481 tctgagcaga ggaggcaagg gcgcgcagtc gcgcgcgcgc gcacacacac acacatcatt
      541 cccctggagt tgtgtcttg
//
LOCUS       XM_032609686            5325 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus crystallin beta-gamma domain containing 2
            (CRYBG2), transcript variant X1, mRNA.
ACCESSION   XM_032609686
VERSION     XM_032609686.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5325
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5325
                     /gene="CRYBG2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742302"
     CDS             432..5234
                     /gene="CRYBG2"
                     /codon_start=1
                     /product="beta/gamma crystallin domain-containing protein
                     2 isoform X1"
                     /protein_id="XP_032465577.1"
                     /db_xref="GeneID:116742302"
                     /translation="MKKQRLQSSHDLPVVTQPDPGRGSDSALQTATLTTPDPVSPLPG
                     TLCSDLDHSEPRTPQDPLLGPNKEEASGPPARAKARVMSTTLTWRQWPPAQEESKHRF
                     HKVSLVSGAQLEVRQEEMSEYGHRREEINGFAALEEETMSHQGPRDGAGSKSLQSHGP
                     IFSKKYTLPLKEKRPVGRPKEAVDQGDGSPQDPRTEPPSPGATAKTEFLALVHGPHEP
                     RPNPGVSLTGGNSRSLEERRVTRTVQTTMVVGGHVHRQVNSSVTNSVGLRLPSKALPR
                     GRNAARVVQAVVVSPQAKDSPSRSQALELLSSLVPAGWSPPASRLPRPLAAVTRCPGL
                     GSTEGAALGQPPETGTAEPEDGSVLAPAGFLDYAHPPQNQDVPATHPDRDQDKAPDAR
                     VYEVPSVQRASSPTQLPLQTSQGHTPVPSSPRLQTQIPSLGLGHPPEQPEVPTHARAQ
                     LTLEPRGPQAWPSVEREGHPDPPAATSLPTVKPEVLTVPGQSLAPSSTRRKAVTSPGG
                     LSAPPSPRNNVVQDSENVPIFSLTQKDVVQSPGVPADSSPKATKVAQAPGGSHSTQKE
                     VVQSIEGSLAPPLTKEEAGQGLTAPAVPPPKQEGEVQESEESPISSPTQKEVQGPGAS
                     TVPYSTQKVVVQGPTALIAPSSSGGKVSLSPGGPPAPRLIGAEASLESQLVPDSTEGK
                     TFPEPSREEEEVDLTTDLEIFLDTLRSMEPPEILRTHRLPRSPRSSSLAIYATLPAIE
                     EDQPGPWVLGPSPQGVPALEANEEEKGEEEEEEPQNPYLSDSEKLQRRQEKARPSPSW
                     DSHPARPPQVSCSLLEMMKKHTAGAKDAHPEVGPEWQAGSRPTSRLGGSLLFGGLVPA
                     LKEAPTLEPLDTKPSALPPHRAPGLKKGPGQLPLLYRERPPPEKPACAQSPEGWSSAL
                     KTQGKLNTRPGKMTLFSEPGCQGSSREVWEDTADASGWAHVASIRVVRGCWVLYEEPA
                     FRGQKLVLPEGDVELGALGPAWSTQGIGSLRRVVRDYITPEISLYSEEGLKGEQVKLT
                     KALEDPQGLERPLQVASATVSAGLWLLYPKPFFEDTPCILEPGEYPTPEAWGASDPSV
                     GSLKPMRLGCPSVEKPGEPKAVVYEAPGFQGQSWEVSRDIYNLQQPEDGQSPSLASVG
                     SLQVLGGCWVGYEKEGFRGHQYLLEEGKYADWSHWGGYNKALTSLRIIRTDFGDPEVV
                     LFEAMDFEGHGVEVSEALPDVELAGHGPRTQAIHVLSGVWVAYEEVGFSGEQYVLEKG
                     VYRNCDDWGASNSALASLQPVLQVGEHNLHFVSKIQLFSGPDFLGDHISFEDDQTSLP
                     PSFQPQSCRVHGGSWILFDEKNFEGEQHILSEGEFPTLTAMGCLASTVLGSLQKVPLH
                     FSEPSIFLYGLECFEGKEIELSGELRSLQAEGFNNHVLSVRIKGGFWVLCQHSDFRGR
                     QWLVGSCEITNWLTYSGTQRVGSLYPIRQRRAYFQLWNVALGGFLAVPDHVEDMKAGR
                     VVVSEPQAGGSCIWYYEDGLLKNQVAPTMSLQVIGTPSTGSKVVLWAESRLPRQTWSI
                     SESGHICSQMFEGWILDVKGGQGYDRDHAVLWELAKDRASQIWTVHVL"
     misc_feature    <942..2510
                     /gene="CRYBG2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3207..3446
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    3471..3713
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    3753..4013
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    4038..4280
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    4317..4556
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    4578..4820
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    4824..5231
                     /gene="CRYBG2"
                     /note="ricin B-type lectin domain, beta-trefoil fold;
                     Region: beta-trefoil_Ricin-like; cl49609"
                     /db_xref="CDD:483949"
     misc_feature    order(4875..4883,4914..4916,4920..4922,4944..4949)
                     /gene="CRYBG2"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:467293"
     misc_feature    order(5007..5012,5043..5045,5049..5051,5070..5075)
                     /gene="CRYBG2"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:467293"
     misc_feature    order(5136..5144,5175..5177,5181..5183,5205..5210)
                     /gene="CRYBG2"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:467293"
ORIGIN      
        1 gggccagccc tgcccgagcc agctcagact ctacgtgagt gtccctctgc caggaggacc
       61 tgctaccaca tcaccggcac cctgcagggg cgtgggcaag cacctgggga ggagactcag
      121 gagcccaaac tggcccaacc agctccccac gcctgcggcc ctgaggaatc caggggctgg
      181 caagagcctc cccagaggcc ccgccccatc acagggtgcc tggtggacct gcctcaggag
      241 ccccggctaa gagccccacc acatcagggg agcacggccc agcggcagga gctccaggct
      301 ggccagatgc ctgggtcccc gcatagatgg cttagccctt agcttcaccc cttgaaggac
      361 cctggcaaag gagaacacct gaaagtaggg agaggggtgg gagatctgag agtatcgtgc
      421 ccggtttaca gatgaagaaa caaaggctcc aaagctcaca tgatttgcct gtggttactc
      481 agcctgaccc tggcaggggg agtgattctg cactgcagac agccaccctg accacgcccg
      541 accctgtctc tcctcttccc ggcaccctct gcagtgatct ggaccacagt gagccaagga
      601 cacctcagga cccgttgctg gggcccaaca aggaggaggc cagtgggccc ccagctcggg
      661 ccaaggcccg agtgatgagt accacactga catggcggca gtggccccct gcccaggaag
      721 agagcaaaca ccgttttcac aaggtgtccc tggtatcagg ggcccagctg gaagtccgcc
      781 aggaggagat gtctgagtat ggccaccgtc gggaggaaat caatggcttt gctgcgctgg
      841 aagaagagac tatgagtcac cagggtccca gggacggggc tggctccaaa agcctccaga
      901 gccatgggcc catcttctcc aaaaagtaca cgctgcccct caaggagaaa aggccagtgg
      961 gaaggccaaa ggaggctgtg gaccagggtg atggcagtcc ccaggacccc aggactgagc
     1021 caccaagccc aggagccacg gccaagactg agtttttggc gctggtgcac gggccccatg
     1081 agcccaggcc caacccaggt gtgagtctca ctggcgggaa ctcccggagc ctcgaggaac
     1141 ggcgggtgac acgcactgtg cagactacca tggtggtggg agggcacgtg caccgacagg
     1201 tgaacagctc tgtgacgaac tctgtggggc taaggctccc gagcaaggcc ctgcccaggg
     1261 gccgcaatgc tgcccgcgtg gtgcaggcag tggtggtgag cccccaagcc aaggactcac
     1321 ccagccgcag ccaggccctg gagctgctaa gtagccttgt gcctgctggg tggagcccac
     1381 ccgccagccg gcttcccagg cccctggctg ctgtgacaag gtgtccaggt ctgggcagca
     1441 cagagggtgc agccctgggg cagccgcctg agacggggac agcagagcca gaggacggat
     1501 ctgtcctggc tcccgcaggc ttcctggact atgcccaccc gcctcagaac caggatgtcc
     1561 ccgcaaccca cccggaccga gaccaggaca aagccccaga tgccagggtc tatgaggtcc
     1621 caagcgtgca gagagcatcc agccccaccc agctccctct ccagacctct cagggtcaca
     1681 caccagtacc ctcctctccc agactccaga cccaaatccc ctccctgggc ctaggtcacc
     1741 ccccagagca gccggaagta cctacccatg ctagggccca gctgactctc gagcccaggg
     1801 gaccccaggc ctggccctct gttgaaaggg aagggcatcc agatccccct gctgccacca
     1861 gcctgcccac ggtgaagcct gaggttctta cagtccctgg acaatctctt gctccatcct
     1921 ctacaagaag gaaggctgtc accagcccag gaggtctttc tgctccaccc tccccaagga
     1981 ataatgttgt tcaggactct gaaaatgtcc ctatcttctc ccttacccag aaagatgtag
     2041 tgcagagccc tggggttcct gctgactcat cccctaaagc aaccaaggtt gcccaggccc
     2101 caggaggcag ccatagcacc caaaaagagg ttgtccagag tattgaaggc agccttgccc
     2161 ctcctctcac caaggaggag gctggtcaag gcctgacagc tcctgctgtc ccacccccca
     2221 aacaggaagg ggaggttcag gaatctgagg agagccccat ctcatctcct acccaaaaag
     2281 aggtccaggg ccctggtgct tctactgtcc catattccac ccagaaagta gttgtccagg
     2341 gccctactgc tctcattgcc ccctcctcct cagggggcaa ggtatccctc agcccaggag
     2401 gcccccctgc cccaaggctg ataggagcag aggccagcct ggagtcccag cttgtccctg
     2461 actccaccga gggcaagacg ttcccggagc catcaaggga ggaggaggag gtggacctga
     2521 ccactgacct ggagattttc ctggacaccc tgcggagtat ggagcccccc gagatcctcc
     2581 gcactcaccg gctgccacga tcgccccgct cctcctccct ggccatatac gccacgctgc
     2641 ctgccatcga ggaggaccag cctgggccat gggtgctggg acccagcccc cagggggtgc
     2701 ccgcactgga agcaaatgaa gaggaaaagg gagaggagga ggaggaggaa ccacagaacc
     2761 cctacctgag cgacagtgaa aagctccagc gcaggcagga gaaagccagg cccagcccct
     2821 cctgggactc ccaccctgcc cgaccccccc aggtctcttg ctctcttctg gagatgatga
     2881 agaagcacac agcaggtgcc aaggatgccc acccagaagt cgggccagag tggcaggcag
     2941 gcagccggcc cacttcccgt cttggaggca gccttctctt tgggggcctg gtgcctgccc
     3001 tcaaggaggc ccccactttg gaaccactgg acaccaaacc atccgctcta ccgccccaca
     3061 gggcaccagg gctcaagaag gggccaggac agctgcccct gctctacagg gaaaggccac
     3121 ctccagagaa gcccgcatgt gcccagtccc cggaggggtg gagctcagca ttgaagaccc
     3181 agggcaaact gaacactagg cctggaaaga tgacgctctt ctcggagcct ggctgccaag
     3241 gcagcagcag ggaggtttgg gaagacactg ctgatgcttc cggctgggcc cacgtggctt
     3301 ccatacgggt ggtacgaggc tgctgggtgc tatacgaaga gccggcgttc cggggccaga
     3361 agctggtcct gcctgaagga gatgtggaac ttggagctct ggggccagca tggagtaccc
     3421 aaggcattgg ctccctgagg agggttgtcc gggactacat taccccagag atcagcctgt
     3481 actctgagga gggcctcaag ggggagcaag tgaagctaac caaggccttg gaggaccccc
     3541 agggcctgga gaggcctctg caggtggcat ctgccactgt ctccgcggga ctgtggcttc
     3601 tataccccaa gcccttcttt gaagacactc cctgcatcct ggagcctgga gagtacccca
     3661 ccccagaggc ctggggtgca tcagatccca gtgtgggctc cctgaagccc atgagattgg
     3721 gatgcccaag tgtggagaag ccaggggagc ccaaggctgt agtgtatgag gccccaggct
     3781 ttcagggcca gagctgggaa gtgagccgag acatctacaa cctgcagcag ccagaggacg
     3841 gccagagccc cagcttggcc tctgtggggt ccctgcaagt tcttgggggc tgctgggtgg
     3901 gctacgagaa ggagggtttc cggggtcacc agtatctgct ggaggaggga aaatacgctg
     3961 attggtcaca ttggggaggc tataacaagg cgctgacctc cctgcgaatc atccggacgg
     4021 acttcgggga tccggaggtg gtgctgtttg aggccatgga ctttgagggg catggcgtgg
     4081 aggtgagcga ggcattgccg gatgtggagc tggcgggaca cggccccaga acgcaggcca
     4141 tccacgtgct cagcggcgtg tgggtggctt atgaggaagt gggtttctcc ggggagcagt
     4201 acgtgctgga gaagggcgtg taccgcaact gcgacgactg gggcgcgagc aacagcgccc
     4261 tcgcctctct gcagccggtc ctgcaggtcg gggagcacaa tctgcacttt gtctcaaaga
     4321 ttcagctttt ctccggtccg gacttcctgg gcgaccacat ctcctttgag gatgaccaga
     4381 cctctcttcc cccttccttc cagccccaat cttgccgggt ccacggcggc agctggatcc
     4441 tgtttgatga gaagaacttt gagggtgagc agcacattct ctctgagggc gagttcccca
     4501 ctctcacagc catgggctgc ctggcctcca cggtcctggg ctctctccag aaggtgcccc
     4561 tgcacttttc agagccatcc attttcctgt atggcctgga gtgcttcgag gggaaggaga
     4621 tcgagctcag tggggagctg cggagcctgc aagccgaggg cttcaacaac cacgtgctgt
     4681 ctgtgcggat caaggggggc ttctgggtgc tgtgccagca cagcgacttc cggggccgcc
     4741 agtggctggt gggcagctgc gagatcacca actggctgac gtacagtggg acccagaggg
     4801 tgggctccct ctaccccatc aggcagcgcc gggcttattt ccaactctgg aatgtggcac
     4861 tggggggatt cctggcagtg ccggaccacg tggaggacat gaaggcgggc cgcgtggtgg
     4921 tctctgagcc ccaagctgga ggcagctgta tctggtacta cgaggatggg ctgctgaaga
     4981 accaggtggc ccccaccatg agcctgcagg tgattggcac ccccagcacc ggctccaagg
     5041 tagtgctgtg ggctgagagc cgcctgcccc gccagacgtg gagcatcagt gaatcaggcc
     5101 atatctgcag ccagatgttt gaaggctgga tcctagatgt gaagggtggc cagggctacg
     5161 accgggacca cgcagtgctg tgggagctgg ccaaggacag ggcgtcccag atctggactg
     5221 tccatgtgct ttgaacctcc ccccaccccc cggccctgga ggctctccct gggatgaaat
     5281 gtttttatag ggttttttgt tgtaacataa acttttataa tatgc
//
LOCUS       XM_032609696            5080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus crystallin beta-gamma domain containing 2
            (CRYBG2), transcript variant X2, mRNA.
ACCESSION   XM_032609696
VERSION     XM_032609696.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5080
                     /gene="CRYBG2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742302"
     CDS             307..4989
                     /gene="CRYBG2"
                     /codon_start=1
                     /product="beta/gamma crystallin domain-containing protein
                     2 isoform X2"
                     /protein_id="XP_032465587.1"
                     /db_xref="GeneID:116742302"
                     /translation="MPGSPHRCDLDHSEPRTPQDPLLGPNKEEASGPPARAKARVMST
                     TLTWRQWPPAQEESKHRFHKVSLVSGAQLEVRQEEMSEYGHRREEINGFAALEEETMS
                     HQGPRDGAGSKSLQSHGPIFSKKYTLPLKEKRPVGRPKEAVDQGDGSPQDPRTEPPSP
                     GATAKTEFLALVHGPHEPRPNPGVSLTGGNSRSLEERRVTRTVQTTMVVGGHVHRQVN
                     SSVTNSVGLRLPSKALPRGRNAARVVQAVVVSPQAKDSPSRSQALELLSSLVPAGWSP
                     PASRLPRPLAAVTRCPGLGSTEGAALGQPPETGTAEPEDGSVLAPAGFLDYAHPPQNQ
                     DVPATHPDRDQDKAPDARVYEVPSVQRASSPTQLPLQTSQGHTPVPSSPRLQTQIPSL
                     GLGHPPEQPEVPTHARAQLTLEPRGPQAWPSVEREGHPDPPAATSLPTVKPEVLTVPG
                     QSLAPSSTRRKAVTSPGGLSAPPSPRNNVVQDSENVPIFSLTQKDVVQSPGVPADSSP
                     KATKVAQAPGGSHSTQKEVVQSIEGSLAPPLTKEEAGQGLTAPAVPPPKQEGEVQESE
                     ESPISSPTQKEVQGPGASTVPYSTQKVVVQGPTALIAPSSSGGKVSLSPGGPPAPRLI
                     GAEASLESQLVPDSTEGKTFPEPSREEEEVDLTTDLEIFLDTLRSMEPPEILRTHRLP
                     RSPRSSSLAIYATLPAIEEDQPGPWVLGPSPQGVPALEANEEEKGEEEEEEPQNPYLS
                     DSEKLQRRQEKARPSPSWDSHPARPPQVSCSLLEMMKKHTAGAKDAHPEVGPEWQAGS
                     RPTSRLGGSLLFGGLVPALKEAPTLEPLDTKPSALPPHRAPGLKKGPGQLPLLYRERP
                     PPEKPACAQSPEGWSSALKTQGKLNTRPGKMTLFSEPGCQGSSREVWEDTADASGWAH
                     VASIRVVRGCWVLYEEPAFRGQKLVLPEGDVELGALGPAWSTQGIGSLRRVVRDYITP
                     EISLYSEEGLKGEQVKLTKALEDPQGLERPLQVASATVSAGLWLLYPKPFFEDTPCIL
                     EPGEYPTPEAWGASDPSVGSLKPMRLGCPSVEKPGEPKAVVYEAPGFQGQSWEVSRDI
                     YNLQQPEDGQSPSLASVGSLQVLGGCWVGYEKEGFRGHQYLLEEGKYADWSHWGGYNK
                     ALTSLRIIRTDFGDPEVVLFEAMDFEGHGVEVSEALPDVELAGHGPRTQAIHVLSGVW
                     VAYEEVGFSGEQYVLEKGVYRNCDDWGASNSALASLQPVLQVGEHNLHFVSKIQLFSG
                     PDFLGDHISFEDDQTSLPPSFQPQSCRVHGGSWILFDEKNFEGEQHILSEGEFPTLTA
                     MGCLASTVLGSLQKVPLHFSEPSIFLYGLECFEGKEIELSGELRSLQAEGFNNHVLSV
                     RIKGGFWVLCQHSDFRGRQWLVGSCEITNWLTYSGTQRVGSLYPIRQRRAYFQLWNVA
                     LGGFLAVPDHVEDMKAGRVVVSEPQAGGSCIWYYEDGLLKNQVAPTMSLQVIGTPSTG
                     SKVVLWAESRLPRQTWSISESGHICSQMFEGWILDVKGGQGYDRDHAVLWELAKDRAS
                     QIWTVHVL"
     misc_feature    <697..2265
                     /gene="CRYBG2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2962..3201
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    3226..3468
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    3508..3768
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    3793..4035
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    4072..4311
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    4333..4575
                     /gene="CRYBG2"
                     /note="Beta/Gamma crystallin; Region: Crystall; pfam00030"
                     /db_xref="CDD:459639"
     misc_feature    4579..4986
                     /gene="CRYBG2"
                     /note="ricin B-type lectin domain, beta-trefoil fold;
                     Region: beta-trefoil_Ricin-like; cl49609"
                     /db_xref="CDD:483949"
     misc_feature    order(4630..4638,4669..4671,4675..4677,4699..4704)
                     /gene="CRYBG2"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:467293"
     misc_feature    order(4762..4767,4798..4800,4804..4806,4825..4830)
                     /gene="CRYBG2"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:467293"
     misc_feature    order(4891..4899,4930..4932,4936..4938,4960..4965)
                     /gene="CRYBG2"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:467293"
ORIGIN      
        1 gggccagccc tgcccgagcc agctcagact ctacgtgagt gtccctctgc caggaggacc
       61 tgctaccaca tcaccggcac cctgcagggg cgtgggcaag cacctgggga ggagactcag
      121 gagcccaaac tggcccaacc agctccccac gcctgcggcc ctgaggaatc caggggctgg
      181 caagagcctc cccagaggcc ccgccccatc acagggtgcc tggtggacct gcctcaggag
      241 ccccggctaa gagccccacc acatcagggg agcacggccc agcggcagga gctccaggct
      301 ggccagatgc ctgggtcccc gcatagatgt gatctggacc acagtgagcc aaggacacct
      361 caggacccgt tgctggggcc caacaaggag gaggccagtg ggcccccagc tcgggccaag
      421 gcccgagtga tgagtaccac actgacatgg cggcagtggc cccctgccca ggaagagagc
      481 aaacaccgtt ttcacaaggt gtccctggta tcaggggccc agctggaagt ccgccaggag
      541 gagatgtctg agtatggcca ccgtcgggag gaaatcaatg gctttgctgc gctggaagaa
      601 gagactatga gtcaccaggg tcccagggac ggggctggct ccaaaagcct ccagagccat
      661 gggcccatct tctccaaaaa gtacacgctg cccctcaagg agaaaaggcc agtgggaagg
      721 ccaaaggagg ctgtggacca gggtgatggc agtccccagg accccaggac tgagccacca
      781 agcccaggag ccacggccaa gactgagttt ttggcgctgg tgcacgggcc ccatgagccc
      841 aggcccaacc caggtgtgag tctcactggc gggaactccc ggagcctcga ggaacggcgg
      901 gtgacacgca ctgtgcagac taccatggtg gtgggagggc acgtgcaccg acaggtgaac
      961 agctctgtga cgaactctgt ggggctaagg ctcccgagca aggccctgcc caggggccgc
     1021 aatgctgccc gcgtggtgca ggcagtggtg gtgagccccc aagccaagga ctcacccagc
     1081 cgcagccagg ccctggagct gctaagtagc cttgtgcctg ctgggtggag cccacccgcc
     1141 agccggcttc ccaggcccct ggctgctgtg acaaggtgtc caggtctggg cagcacagag
     1201 ggtgcagccc tggggcagcc gcctgagacg gggacagcag agccagagga cggatctgtc
     1261 ctggctcccg caggcttcct ggactatgcc cacccgcctc agaaccagga tgtccccgca
     1321 acccacccgg accgagacca ggacaaagcc ccagatgcca gggtctatga ggtcccaagc
     1381 gtgcagagag catccagccc cacccagctc cctctccaga cctctcaggg tcacacacca
     1441 gtaccctcct ctcccagact ccagacccaa atcccctccc tgggcctagg tcacccccca
     1501 gagcagccgg aagtacctac ccatgctagg gcccagctga ctctcgagcc caggggaccc
     1561 caggcctggc cctctgttga aagggaaggg catccagatc cccctgctgc caccagcctg
     1621 cccacggtga agcctgaggt tcttacagtc cctggacaat ctcttgctcc atcctctaca
     1681 agaaggaagg ctgtcaccag cccaggaggt ctttctgctc caccctcccc aaggaataat
     1741 gttgttcagg actctgaaaa tgtccctatc ttctccctta cccagaaaga tgtagtgcag
     1801 agccctgggg ttcctgctga ctcatcccct aaagcaacca aggttgccca ggccccagga
     1861 ggcagccata gcacccaaaa agaggttgtc cagagtattg aaggcagcct tgcccctcct
     1921 ctcaccaagg aggaggctgg tcaaggcctg acagctcctg ctgtcccacc ccccaaacag
     1981 gaaggggagg ttcaggaatc tgaggagagc cccatctcat ctcctaccca aaaagaggtc
     2041 cagggccctg gtgcttctac tgtcccatat tccacccaga aagtagttgt ccagggccct
     2101 actgctctca ttgccccctc ctcctcaggg ggcaaggtat ccctcagccc aggaggcccc
     2161 cctgccccaa ggctgatagg agcagaggcc agcctggagt cccagcttgt ccctgactcc
     2221 accgagggca agacgttccc ggagccatca agggaggagg aggaggtgga cctgaccact
     2281 gacctggaga ttttcctgga caccctgcgg agtatggagc cccccgagat cctccgcact
     2341 caccggctgc cacgatcgcc ccgctcctcc tccctggcca tatacgccac gctgcctgcc
     2401 atcgaggagg accagcctgg gccatgggtg ctgggaccca gcccccaggg ggtgcccgca
     2461 ctggaagcaa atgaagagga aaagggagag gaggaggagg aggaaccaca gaacccctac
     2521 ctgagcgaca gtgaaaagct ccagcgcagg caggagaaag ccaggcccag cccctcctgg
     2581 gactcccacc ctgcccgacc cccccaggtc tcttgctctc ttctggagat gatgaagaag
     2641 cacacagcag gtgccaagga tgcccaccca gaagtcgggc cagagtggca ggcaggcagc
     2701 cggcccactt cccgtcttgg aggcagcctt ctctttgggg gcctggtgcc tgccctcaag
     2761 gaggccccca ctttggaacc actggacacc aaaccatccg ctctaccgcc ccacagggca
     2821 ccagggctca agaaggggcc aggacagctg cccctgctct acagggaaag gccacctcca
     2881 gagaagcccg catgtgccca gtccccggag gggtggagct cagcattgaa gacccagggc
     2941 aaactgaaca ctaggcctgg aaagatgacg ctcttctcgg agcctggctg ccaaggcagc
     3001 agcagggagg tttgggaaga cactgctgat gcttccggct gggcccacgt ggcttccata
     3061 cgggtggtac gaggctgctg ggtgctatac gaagagccgg cgttccgggg ccagaagctg
     3121 gtcctgcctg aaggagatgt ggaacttgga gctctggggc cagcatggag tacccaaggc
     3181 attggctccc tgaggagggt tgtccgggac tacattaccc cagagatcag cctgtactct
     3241 gaggagggcc tcaaggggga gcaagtgaag ctaaccaagg ccttggagga cccccagggc
     3301 ctggagaggc ctctgcaggt ggcatctgcc actgtctccg cgggactgtg gcttctatac
     3361 cccaagccct tctttgaaga cactccctgc atcctggagc ctggagagta ccccacccca
     3421 gaggcctggg gtgcatcaga tcccagtgtg ggctccctga agcccatgag attgggatgc
     3481 ccaagtgtgg agaagccagg ggagcccaag gctgtagtgt atgaggcccc aggctttcag
     3541 ggccagagct gggaagtgag ccgagacatc tacaacctgc agcagccaga ggacggccag
     3601 agccccagct tggcctctgt ggggtccctg caagttcttg ggggctgctg ggtgggctac
     3661 gagaaggagg gtttccgggg tcaccagtat ctgctggagg agggaaaata cgctgattgg
     3721 tcacattggg gaggctataa caaggcgctg acctccctgc gaatcatccg gacggacttc
     3781 ggggatccgg aggtggtgct gtttgaggcc atggactttg aggggcatgg cgtggaggtg
     3841 agcgaggcat tgccggatgt ggagctggcg ggacacggcc ccagaacgca ggccatccac
     3901 gtgctcagcg gcgtgtgggt ggcttatgag gaagtgggtt tctccgggga gcagtacgtg
     3961 ctggagaagg gcgtgtaccg caactgcgac gactggggcg cgagcaacag cgccctcgcc
     4021 tctctgcagc cggtcctgca ggtcggggag cacaatctgc actttgtctc aaagattcag
     4081 cttttctccg gtccggactt cctgggcgac cacatctcct ttgaggatga ccagacctct
     4141 cttccccctt ccttccagcc ccaatcttgc cgggtccacg gcggcagctg gatcctgttt
     4201 gatgagaaga actttgaggg tgagcagcac attctctctg agggcgagtt ccccactctc
     4261 acagccatgg gctgcctggc ctccacggtc ctgggctctc tccagaaggt gcccctgcac
     4321 ttttcagagc catccatttt cctgtatggc ctggagtgct tcgaggggaa ggagatcgag
     4381 ctcagtgggg agctgcggag cctgcaagcc gagggcttca acaaccacgt gctgtctgtg
     4441 cggatcaagg ggggcttctg ggtgctgtgc cagcacagcg acttccgggg ccgccagtgg
     4501 ctggtgggca gctgcgagat caccaactgg ctgacgtaca gtgggaccca gagggtgggc
     4561 tccctctacc ccatcaggca gcgccgggct tatttccaac tctggaatgt ggcactgggg
     4621 ggattcctgg cagtgccgga ccacgtggag gacatgaagg cgggccgcgt ggtggtctct
     4681 gagccccaag ctggaggcag ctgtatctgg tactacgagg atgggctgct gaagaaccag
     4741 gtggccccca ccatgagcct gcaggtgatt ggcaccccca gcaccggctc caaggtagtg
     4801 ctgtgggctg agagccgcct gccccgccag acgtggagca tcagtgaatc aggccatatc
     4861 tgcagccaga tgtttgaagg ctggatccta gatgtgaagg gtggccaggg ctacgaccgg
     4921 gaccacgcag tgctgtggga gctggccaag gacagggcgt cccagatctg gactgtccat
     4981 gtgctttgaa cctcccccca ccccccggcc ctggaggctc tccctgggat gaaatgtttt
     5041 tatagggttt tttgttgtaa cataaacttt tataatatgc
//
LOCUS       XM_032609710            7345 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116742307
            (LOC116742307), mRNA.
ACCESSION   XM_032609710
VERSION     XM_032609710.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..7345
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7345
                     /gene="LOC116742307"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116742307"
     CDS             394..7317
                     /gene="LOC116742307"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:2002..2004,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC116742307"
                     /protein_id="XP_032465601.1"
                     /db_xref="GeneID:116742307"
                     /translation="MGQTQSTPLSLLLTNFGDVKSRGHDLSLDIRKRKLITFCRSEWP
                     TFGVGWPTEGTFCLPIVLKIKSRVFLPGKEGHPDQIPYILVWQDLVENPPPWMAPFLS
                     SGTYKILTARPTKPPKPQTSTAPILSDSQDLLLIEPPPYQHPPLAPQPVPLPAPDPAP
                     LPLEEPPVAPPERPPRSEPEEREAEALPALLPNENNSPGPAGRTRGRTQRDPGFRHPD
                     STTALPLREIGPPDETGNPRLQYWPFSTSDLYNWKTQNARFSDNPKDLIALLDSVMFT
                     HQPIWDDCQQLLRILFTTEERERIQLEARKLVPGDDGQPTANPDLINAAFPLTRPPQD
                     DWNYNTGEGRGRLLIYRQTLMAGLRAAARKPTNLAKVYSIVQGKTESPSSYLERLMEA
                     FRQYTLMDPEAPENQAAVVMSFVNQAAPDIKKKLQKLEDLEGKQIQDLLRIAQRVFNN
                     RDAPEDRQLKATEKMTKVLAAIVQKDQGGPPATRPPRQPLDRDQCAYCKEKGHWAREC
                     PKKRQPRPNQGQWQPKATTPVLFTHDAEXGGRGSDPLPEPRVTLQVEGKPVQFLVDTG
                     AQHSVLVKPHGKISDKTSWVQGATGVKRYPWTTQRTVDLGTGKVTHSFLVIPDSPCPL
                     LGRDLLTKMGAQIHFRSEGPIITDPHNQPISVLTLNLEDEYRLHQEPPSQNQDIKSWL
                     QQFPEAWAETGGMGLAKHRPALFIEIKPGADPARVRQYPMPIEAKTGITPHIRRLLDL
                     GILRPCQSAWNTPLLPVRKPNSKDYRPVQDLREVNRRVIDIHPTVPNPYTLLSALSPE
                     KQWYTVLDLKDAFFSLPLAPKSQELFAFEWSDPERGINGQLTWTRLPQGFKNSPTLFD
                     EALHEDLSEYRRQNPNITLLQYVDDLLIAAGTTEACLQGTRNLLQTLGTLGYRASAKK
                     AQICRPEVTYLGYLLKGGQRWLTDARKETVLRIPRPTTPRQVREFLGSAGFCRLWIPK
                     FAEMAKPLYLATKEQTPFEWTEEAEQSFQQIKTALLSAPALGLPDVSKPFHLFVDENK
                     GIAKAVLTQPLGPWTRPIAYLSKKLDPVAAGWPPCLRVIAATALLVKDANKLTMGQEL
                     HVTTPHAIDGVLKQPPDQWMSNARLVHYQGLLLNPLKISYTPPRALNPASLLPDPDLD
                     SPLHDCAEVLAQIHGVREDLRDQPLLDAQVTWFTDGSSFVQQGQRYVGAAVTSETEVI
                     WAKTLPPGTSAQKAELIALTQALKMSKDQKATIYTDSRYAFATAHIHGAIYREWGLLT
                     AEGKDIKNKEEILALLAAIWEPKKLAIVHCPGHQKPTNPVARGNNLADQTARNAAYTP
                     IPLLPLQLPDPGPRELPPQPDYSEDDIRWINKLPLTQVKDGWWRDAKNNILLPEKLGT
                     LVLERIHRSTHLGARRLQDLIRQTGLKIKNVSEKTERLVAGCAVCQLHNANTHPPTAG
                     IRERGNQPGAYWEVDFTEVKPGKYGYRYLLVFIDTFSGWTEAFPTKNETAQIVAKKLL
                     EEILPRYGFPVMIGSDNGPAFVSKVSQDLASILGADWKLHCAYRPQSSGQVERMNRTL
                     KETLTKLTMETGANWVVLLPYALFRVRNSPYKLGFTPYEIIHGRPPPIIPNLKTNLIQ
                     SDPENNLLSSLQALQRIHETIWPKLKELYTTGPPPTPHQLQPGDWVLVKRHRQETLEP
                     RWKGPYQIILTTPTAIKVDSIAAWIHYTHVKPVDPLSDLIKSTKADVTWTVDRSKDNP
                     LKLTLRHTLPHEDQGTADSSNDSPNPQPSGHEGRIQPPPTKNALMQQLYGAPCECRGG
                     TSETPVVPRRYTHMQDCGGITAYLVQVYGGTGVKTSWQCHHKPKPLPPPAICPCSTFQ
                     ESMHSTCYSSYQQCTGTNNKTYFTATLQNNKSPTISDNNKYLQAGCIGTPGTPVCWNT
                     RAPIHMSDGGGPQDEVRQIETRRQIEKAYQDLYPQLSYHPLIRPKVNPSELDPQTTTI
                     LEATFALLNTTNPNLAQDCWLCLPQGPPRPIAIPIFANLNISKQCNPTLLPEPFPIQF
                     SKFSTTFNTSCFVKNDSLSNASIDLGILSSTGCSQYIPVNSSLCSPNTTVFVCGNNLA
                     YTYLPQNWTGVCNLATLLPNVDLISGDTPLPIPSFDLWAGRTKRAITAIPLLVGLGIT
                     GAVATGSTGLGVSLHSYNQLSRQLIEDVEALSGTIQDLQDQLDSLAEVVLQNRRGLDL
                     LTAEQGGICLALKEKCCFYANKSGIVRNKIHQLQEDLARRRKELADNPLWSGFHGMLP
                     FLLPFLGPLLCLLLLLTIGPCIFNKIMDFVRKRINTVQLMVLRSQYQPYEDLENEETE
                     P"
     misc_feature    397..828
                     /gene="LOC116742307"
                     /note="Matrix protein (MA), p15; Region: Gag_MA;
                     pfam01140"
                     /db_xref="CDD:426076"
     misc_feature    1111..1740
                     /gene="LOC116742307"
                     /note="Gag P30 core shell protein; Region: Gag_p30;
                     pfam02093"
                     /db_xref="CDD:426597"
     misc_feature    1873..1923
                     /gene="LOC116742307"
                     /note="zinc finger; Region: ZnF_C2HC; smart00343"
                     /db_xref="CDD:197667"
     misc_feature    2041..2286
                     /gene="LOC116742307"
                     /note="Retropepsin of the RTVL_H family of human
                     endogenous retrovirus-like elements; Region:
                     RP_RTVL_H_like; cd06095"
                     /db_xref="CDD:133159"
     misc_feature    order(2083..2085,2089..2091,2095..2097,2149..2157,
                     2263..2265)
                     /gene="LOC116742307"
                     /note="inhibitor binding site [active]"
                     /db_xref="CDD:133159"
     misc_feature    2083..2091
                     /gene="LOC116742307"
                     /note="catalytic motif [active]"
                     /db_xref="CDD:133159"
     misc_feature    2083..2085
                     /gene="LOC116742307"
                     /note="Catalytic residue [active]"
                     /db_xref="CDD:133159"
     misc_feature    2533..3180
                     /gene="LOC116742307"
                     /note="A subfamily of reverse transcriptases (RTs) found
                     in sequences similar to the intact endogenous retrovirus
                     ZFERV from zebrafish and to Moloney murine leukemia virus
                     RT. An RT gene is usually indicative of a mobile element
                     such as a retrotransposon or...; Region: RT_ZFREV_like;
                     cd03715"
                     /db_xref="CDD:239685"
     misc_feature    order(2551..2556,2656..2658,2698..2709,2716..2721,
                     2932..2934)
                     /gene="LOC116742307"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:239685"
     misc_feature    order(2809..2826,2929..2934,3025..3027,3031..3036,
                     3166..3171)
                     /gene="LOC116742307"
                     /note="putative active site [active]"
                     /db_xref="CDD:239685"
     misc_feature    order(2809..2826,2929..2931,3031..3033)
                     /gene="LOC116742307"
                     /note="putative NTP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239685"
     misc_feature    3367..>3564
                     /gene="LOC116742307"
                     /note="RNase H-like domain found in reverse transcriptase;
                     Region: RT_RNaseH_2; pfam17919"
                     /db_xref="CDD:465567"
     misc_feature    3442..3759
                     /gene="LOC116742307"
                     /note="RNase H-like domain found in reverse transcriptase;
                     Region: RT_RNaseH; pfam17917"
                     /db_xref="CDD:465565"
     misc_feature    3922..4344
                     /gene="LOC116742307"
                     /note="Bel/Pao family of RNase HI in long-term repeat
                     retroelements; Region: RNase_HI_RT_Bel; cd09273"
                     /db_xref="CDD:260005"
     misc_feature    order(3934..3945,4033..4041,4048..4050,4111..4113,
                     4264..4266,4333..4335)
                     /gene="LOC116742307"
                     /note="RNA/DNA hybrid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:260005"
     misc_feature    <4540..5175
                     /gene="LOC116742307"
                     /note="Transposase and inactivated derivatives, IS30
                     family [Mobilome: prophages, transposons]; Region: Tra8;
                     COG2826"
                     /db_xref="CDD:442074"
     misc_feature    4723..5010
                     /gene="LOC116742307"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:459897"
     misc_feature    5335..5589
                     /gene="LOC116742307"
                     /note="Murine leukemia virus (MLV) integrase (IN)
                     C-terminal domain; Region: MLVIN_C; pfam18697"
                     /db_xref="CDD:436671"
     misc_feature    5713..7230
                     /gene="LOC116742307"
                     /note="ENV polyprotein (coat polyprotein); Region:
                     TLV_coat; pfam00429"
                     /db_xref="CDD:306850"
ORIGIN      
        1 cccttgccgt ttggctttga ctcttgtctc tggtggtctt gtggaggggt ctcgtgaccg
       61 tgggcatttc atttgggggc tcgtccggga tgcccccaag cccaccagac atcaggtcaa
      121 cgggtcatcg ctgacaaccg atcggtaagt aagctggctc aaggtacctt ctgttttggg
      181 gactaggaca gtcctggcgg acgcgctata ggacacctag tcgggcgtgg ttggagacgt
      241 ccaccgcgac ccatctgggg gttgatagcc catctgaagc gcgcacgcga taacctccct
      301 tcctcctttt acaggctccg ctattgggac tgctcttaat cactttcgtt ttcagaataa
      361 ccttttctaa ccaacctctt ccaggaccta aacatgggcc aaacacagag tacccctctc
      421 tccctccttc tcactaattt tggggatgtg aaatcccgag gacacgatct cagtctggac
      481 atccggaaaa gaaaacttat taccttctgc cgctctgaat ggccaacttt cggggttggt
      541 tggcccaccg agggtacctt ttgtcttcct atagtcctaa aaattaaatc tagagttttc
      601 ttaccaggga aagaaggcca tccggaccaa atcccctaca tcttggtatg gcaggacctg
      661 gtagaaaacc cacctccctg gatggccccc tttttgtcat cagggacata taagatcctt
      721 acggcccgac caactaaacc tcccaagcct cagacctcaa ccgcacccat actttctgac
      781 agccaagacc tccttctcat agaaccccct ccatatcaac atcctccttt ggccccacaa
      841 ccggtccccc ttcctgctcc tgaccctgct cctctcccct tggaagaacc tcctgtggcc
      901 cctcccgaga ggccacccag gtcagaaccg gaggagcgag aggcagaggc actgccggcc
      961 ctcctgccca atgaaaataa ctcccctggg ccggctggac gcacccgtgg acgcactcag
     1021 cgcgacccag ggttccgcca tccagattcc accacagccc tacccctacg agaaataggc
     1081 cctcccgatg agacagggaa cccccgactc caatattggc cattctctac cagtgactta
     1141 tataattgga aaacccagaa tgctcgtttt tctgataatc ctaaagactt gatagctctt
     1201 ctagatagtg ttatgtttac ccatcagccc atctgggatg actgccaaca gcttctccgg
     1261 atcctgttca ctaccgagga acgagaacga atccagctgg aggcaagaaa actggttcct
     1321 ggagatgatg gtcaacccac cgctaaccct gatcttatta atgcagcctt tcccttaact
     1381 cgccccccgc aggatgattg gaactacaac accggagaag gtaggggacg actgctcatt
     1441 tatcgccaga ctctaatggc gggtctccgg gctgccgcgc gcaagcccac taatttggcc
     1501 aaggtatatt caattgtaca aggtaaaaca gaaagtccct cctcttattt agaaagatta
     1561 atggaagcct ttaggcaata tacccttatg gatccagagg cccccgaaaa tcaggctgcc
     1621 gttgtaatgt ccttcgttaa ccaggcagcc cctgatatta aaaagaaact ccagaagtta
     1681 gaagatctgg agggcaaaca gatacaggac ctactccgta ttgctcagcg cgtctttaat
     1741 aaccgagacg ccccagagga tagacaactt aaagccactg agaaaatgac taaggtcctg
     1801 gccgccattg ttcagaaaga tcaagggggc cccccagcca ctcgacctcc caggcaacca
     1861 ttggacagag atcaatgtgc ctattgcaag gaaaaaggcc attgggctcg ggaatgcccc
     1921 aaaaaaaggc agccgcgccc caaccagggg caatggcaac cgaaggccac caccccagtc
     1981 ctgtttacac atgatgcaga gtagggggga cggggttcgg accccctccc cgaacccagg
     2041 gtaaccctac aagtggaggg gaaaccagtc caattcctgg tggatacagg ggcacagcat
     2101 tcggtcttgg ttaagcccca cgggaaaatt tctgacaaaa cctcctgggt ccagggagct
     2161 acaggagtta aacgttaccc ctggaccact cagagaactg tagacttggg cacgggaaaa
     2221 gtaacccact cctttctggt cattcccgat agcccttgcc ccttactggg gagagactta
     2281 cttactaaaa tgggagcgca aattcatttt cggtcagagg ggccgatcat aacagaccct
     2341 cacaaccaac ccatatctgt gctcaccctg aacttggaag atgagtaccg acttcaccag
     2401 gaaccaccct cccaaaatca agatataaag tcatggcttc agcagttccc cgaagcatgg
     2461 gcagaaacag gtgggatggg actagccaaa catcgcccag ccctattcat agaaatcaaa
     2521 ccaggggcag atcctgcacg tgtcagacaa tatcccatgc ccatagaggc caaaactggt
     2581 atcactccac atattcgccg gcttcttgac ctaggtatac tgcgtccctg ccagtcggcc
     2641 tggaacacac ccctgctgcc agtccgcaaa cctaacagta aagactaccg cccagtacag
     2701 gacctgaggg aagttaacag acgagtcata gacatccatc ctaccgtacc caatccatat
     2761 actcttttga gcgcccttag tccagaaaaa caatggtata ctgtgctgga cctcaaagat
     2821 gcctttttta gtttaccctt agcacccaaa agtcaagaac tctttgcctt cgaatggtcg
     2881 gatcccgaga gaggcataaa cggacaactc acctggacca gacttcccca aggattcaag
     2941 aactcaccta ccttgtttga tgaggcccta cacgaggatc tcagtgagta ccggagacaa
     3001 aaccccaata taaccctcct gcagtatgtt gatgatctct taatagctgc tgggaccact
     3061 gaagcctgcc tgcagggaac cagaaacctc ctacagactc tcggcaccct gggataccgg
     3121 gcctctgcca aaaaggcgca gatctgcagg cctgaggtaa cttacctggg atacctactg
     3181 aaaggggggc aacgatggct cacagatgca cggaaagaga ctgtcctccg catccccaga
     3241 cccaccacgc ctcgacaggt gagagaattt ttggggtcag ctgggttctg ccgtttatgg
     3301 atacccaaat ttgctgaaat ggccaaacca ctatacttag ccaccaaaga acagacgccc
     3361 tttgaatgga cagaggaggc tgagcaatca tttcagcaga tcaaaactgc cttgctatcc
     3421 gcacccgccc tgggtctccc tgatgtctcc aaacccttcc acctctttgt ggatgaaaac
     3481 aaaggcatag ctaaggccgt gttgacccaa cccctcggtc cttggaccag gcctatcgct
     3541 tacctatcga agaaattgga ccccgtggct gcaggctggc ctccttgcct ccgggtgatc
     3601 gccgccacag ccctattggt aaaggatgcc aacaaactaa ctatgggaca ggaattacat
     3661 gtcaccaccc cccacgccat cgacggggtt ctcaaacagc ctcccgacca atggatgagc
     3721 aatgctcgat tggtccacta ccagggtcta ctgttaaatc ctctcaaaat cagctacact
     3781 ccaccacggg ctttaaaccc tgcctctcta ttacctgacc cagacttaga ctccccactc
     3841 catgattgtg cagaggtact ggctcagatc catggggttc gggaagacct acgtgaccag
     3901 cccctattag atgcacaagt cacatggttc actgacggca gtagttttgt ccagcaaggt
     3961 cagaggtatg tgggggcagc ggtaacatcg gaaactgagg tgatatgggc aaagactctc
     4021 cccccaggga cctcagccca aaaagctgaa ttaattgccc tgacccaagc tcttaagatg
     4081 agcaaagacc aaaaagccac catatataca gacagccggt atgctttcgc taccgcacac
     4141 atacatgggg caatataccg agagtgggga ctactcacag cagagggcaa agacatcaag
     4201 aacaaagagg aaatcctggc cttgctagcg gccatatggg aacccaaaaa gttagccatt
     4261 gtacattgcc cggggcatca aaaacccaca aatccagtcg cccggggcaa caatttggca
     4321 gaccagacgg ctcgaaatgc ggcatacact ccaataccat tacttcccct acaactgcca
     4381 gatccagggc cccgggaatt accgccccaa cccgactact cggaagatga cattagatgg
     4441 ataaacaaac tccctctaac ccaggttaaa gacggatggt ggcgggacgc taagaacaat
     4501 atcctccttc cagaaaaact aggaaccttg gtccttgaac ggatccatcg tagcacccac
     4561 ttgggcgccc gacggctaca ggatctcatc agacagactg gacttaaaat taaaaatgtc
     4621 tccgaaaaaa ctgaacgact ggttgctggc tgtgcagtct gccaactcca taatgctaac
     4681 acccacccac caaccgctgg catccgggaa agagggaacc agcccggagc ctactgggaa
     4741 gtggacttca cggaggtaaa gcctggcaaa tatggatata gatatttact ggtgtttata
     4801 gatacctttt caggttggac tgaggcattc ccgaccaaga atgagacagc acaaatagta
     4861 gctaaaaagc tactagaaga aatcctgccc aggtatggct ttccagttat gatagggtca
     4921 gacaacgggc cggccttcgt ttctaaggta agtcaggatc tggcttccat acttggggct
     4981 gattggaaat tacattgtgc ataccgcccc cagagttcag gacaggtaga aagaatgaat
     5041 agaactctaa aagagacctt gactaaatta accatggaga ctggtgctaa ctgggtagtc
     5101 ctactcccct acgctctgtt tagggtgcga aattccccct ataagctagg atttaccccc
     5161 tacgaaataa tacatggtag gcctcctcct attatcccta acctaaagac taaccttatc
     5221 caatcggacc cagaaaataa tctcctgtct tccctccaag ccttacagcg gatacatgag
     5281 acaatctggc ccaaactaaa agagctatat acaacaggac ccccgcctac tccacaccag
     5341 ctccaaccag gtgactgggt ccttgtcaaa cgccatcgac aagagaccct agaacccagg
     5401 tggaaaggac cttaccagat catcctgaca acgccgacgg ccatcaaggt ggacagcata
     5461 gctgcctgga tccattacac ccacgtcaag ccggtggacc cactttctga cctcatcaag
     5521 tccactaaag ctgacgtcac ctggacggtt gatcggagta aggacaatcc cctcaaactg
     5581 accttacgcc ataccctccc ccatgaggac caaggtactg ctgatagctc taatgacagt
     5641 cctaaccctc aaccctcggg ccacgagggg aggattcaac ccccccccac taagaatgct
     5701 ttaatgcaac aactatatgg tgcaccgtgc gagtgcaggg gaggtactag cgagactcct
     5761 gttgttcccc gaaggtatac tcatatgcag gattgtgggg gaataactgc ataccttgtt
     5821 caggtatatg gaggcaccgg ggtcaaaacc agctggcaat gccaccataa gcctaaacca
     5881 ctcccccccc cagctatttg cccctgttct acttttcagg aatcaatgca tagcacgtgc
     5941 tactcctctt accagcaatg tacagggacc aataacaaga cttatttcac agccacacta
     6001 cagaataata aaagtcccac cattagtgat aataataaat accttcaggc tggatgcatt
     6061 ggcactcccg ggaccccggt gtgctggaat accagggccc ccatacatat gtcagacggt
     6121 ggagggcccc aagacgaagt gcgccagata gaaacccgaa gacaaataga aaaggcctat
     6181 caggatctgt acccacagct cagctaccac cccctaattc gccctaaggt caatccctct
     6241 gaactggacc cccaaaccac gactatacta gaagctactt ttgcgctttt aaataccacc
     6301 aaccccaact tagcacaaga ttgctggctc tgccttcctc aaggaccgcc ccgccctata
     6361 gctatcccca ttttcgccaa tttaaacatc agcaaacaat gtaacccaac tttactcccc
     6421 gagccgtttc ccatacaatt ttcaaagttt tcaactacct ttaatacctc atgctttgtc
     6481 aagaacgatt ccctctctaa cgccagtatt gacttgggaa tcctttcatc tactggatgt
     6541 agtcagtata tccccgtaaa ctcctccctc tgtagtccta acaccactgt ctttgtctgt
     6601 ggaaataacc tagcatacac ctatttaccc cagaactgga caggggtctg caacctagcc
     6661 accctcctcc ctaatgtaga cctgatctcg ggagacactc cattgcccat tcccagcttt
     6721 gacctttggg caggaagaac caaacgagcc attacagcca tacccctcct ggtaggacta
     6781 ggaattacag gagctgtggc cacagggagt acaggtcttg gggtctccct tcactcctat
     6841 aatcagctgt ctagacaatt aatagaagat gtagaagccc tctctggaac cattcaggac
     6901 ttacaggacc aattagattc gctggccgag gtggtcctac aaaataggag gggcttagac
     6961 ttgctgacag ctgaacaggg tgggatatgc ctcgctctaa aagaaaaatg ttgtttttat
     7021 gcaaataaat caggcattgt aagaaacaaa attcaccagc tccaggaaga cttagcccgc
     7081 cgtcggaaag aattagcgga caatcccctt tggtcaggat ttcatgggat gcttcccttc
     7141 ctcctcccct tcctgggccc tctactatgc ctccttctcc tcctcactat aggcccctgt
     7201 atattcaaca aaatcatgga tttcgtccga aaaagaataa acacagttca gctaatggta
     7261 ttaagatcac aatatcagcc atacgaggac ttagaaaatg aagaaactga gccttgagga
     7321 cccaagattg gctcctctgg ttcat
//
LOCUS       XM_032609721            4863 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ArfGAP with coiled-coil, ankyrin repeat
            and PH domains 3 (ACAP3), transcript variant X1, mRNA.
ACCESSION   XM_032609721
VERSION     XM_032609721.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4863
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4863
                     /gene="ACAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742312"
     CDS             93..3596
                     /gene="ACAP3"
                     /codon_start=1
                     /product="arf-GAP with coiled-coil, ANK repeat and PH
                     domain-containing protein 3 isoform X1"
                     /protein_id="XP_032465612.1"
                     /db_xref="GeneID:116742312"
                     /translation="MTVEFEECIKDSPRFRATIDEVETDVVEIEAKLDKLVKLCSGVI
                     EAGKAYVTTNRLFVSGVRDLSQQCQGDTVISECLQRFGDSLQEMVTYHMILFDQAQRS
                     VRQQLHNFVKEDVRKFKETKKQFDRVREDMELSLARNAQAPRHRPHEAEEAAGALVLA
                     RKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYSFFQQGYSLLHQLDPYMKKL
                     AAELDQLVIDSAVEKREMERKHAAIQQRVRPCSPGRAPEGPRVHCPSPRSTRGGPGGP
                     SAQTRAPSLPRLTLIFELQSEAGVPTLRVSAQWNGHLDASASPLRPQTLGLQLGRGSY
                     CGHSWPGTAGGRDGLRGGSWRPQPAGRGRGFAHWLSPSSHLSCSRPQTLLQVSGRPPR
                     GEGPPVGRASALPAPRRFSTKDTSTAPAQLRTRGPLQRRWLSWDRVPFVPFVPFVPFG
                     SSCSCPFPPPLSQGSRWLGLLSHCRTPRTTLSVSPARVNGALSGWSGQPSWRRERGTA
                     SFLIPEPAALPGWGVGAGALRAPSCDGRHLPPRGFGSGSDCEDAPPTSPLGQPERAAV
                     SPQPRVGAHWGLGSDHPQDFSYDEPKVEFDVDAPSGVVMEGYLFKRASNAFKTWNRRW
                     FSIQNSQLVYQKKLKDVLTVVVDDLRLCSVKPCEDVERRFCFEVVSPTKSCMLQADSE
                     KLRQAWVQAVQASIASAYRESPDSCYRERLDRTASPSASSIDSATDSRERSARGERVL
                     QRVQHVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWE
                     PELLKLMCELGNSTVNQIYEAQCAGPGSRKPTASSPRQDKEAWIKDKYVEKKFVRKPP
                     SAPAQEAPRRWRAQKCPRHHSSPRAHTTRRSKIRMEPVPPSVAALCSGSTESRFRRDS
                     LFCPDELDSLFSYFDAGAAAAGPRSLSSDSGLGGSSDGSSDVLAFGVGSVVDRVTEEE
                     GAESEESSGEADGEAEAWGLADVRELHPGLLAHRAARTRDLPALAAALAQGAEVNWAD
                     AEDEGKTPLVQAVLGGSLIICEFLLQNGADVNQRDSRGRAPLHHATLLGRTGQVCLFL
                     KRGADQHALDHMQQDPLSIAVQEANADIVTLLRLARMAEEMREAEAPPGQPGPLAGSS
                     PTELQYRRCIQEFISLHLDES"
     misc_feature    138..737
                     /gene="ACAP3"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with
                     Coiled-coil, ANK repeat and PH domain containing protein
                     3; Region: BAR_ACAP3; cd07637"
                     /db_xref="CDD:153321"
     misc_feature    order(165..167,174..179,189..191,195..200,207..212,
                     216..221,249..254,258..263,270..275,279..284,291..293,
                     333..335,342..347,618..620,627..632,636..638,651..653,
                     660..665,669..674,681..686,693..698,702..707,714..719,
                     723..728)
                     /gene="ACAP3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153321"
     misc_feature    1905..2195
                     /gene="ACAP3"
                     /note="ArfGAP with coiled-coil, ankyrin repeat and PH
                     domains Pleckstrin homology (PH) domain; Region: PH_ACAP;
                     cd13250"
                     /db_xref="CDD:270070"
     misc_feature    2301..2648
                     /gene="ACAP3"
                     /note="GTPase-activating protein (GAP) for the ADP
                     ribosylation factors (ARFs); Region: ArfGap; cl28907"
                     /db_xref="CDD:355783"
     misc_feature    order(2346..2348,2355..2357,2406..2408,2415..2417,
                     2430..2432)
                     /gene="ACAP3"
                     /note="arginine finger; other site"
                     /db_xref="CDD:350058"
     misc_feature    order(2346..2348,2355..2357,2406..2408,2415..2417)
                     /gene="ACAP3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:350058"
     misc_feature    <3099..>3452
                     /gene="ACAP3"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(3105..3110,3117..3125,3129..3134,3144..3146,
                     3153..3155,3180..3182,3192..3194,3198..3200,3210..3215,
                     3222..3230,3234..3239,3249..3251,3258..3260,3285..3287,
                     3291..3293,3297..3299,3309..3314,3321..3329,3333..3338,
                     3348..3350,3357..3359,3384..3386)
                     /gene="ACAP3"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    3192..3287
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3291..3386
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gcgcggcgcg gcgcaggcgg gcgggccggc aggggatgct gctcggggcg ccgcggtcct
       61 cgtgccagtg agcgcctcgc gccgccgcag ccatgacggt ggagttcgag gagtgcatca
      121 aggactcgcc gcgcttcagg gcaactatcg acgaggtgga aacggacgtg gttgagatcg
      181 aggccaaact ggacaagctg gtgaagctgt gcagcggcgt gatcgaggct ggcaaggcct
      241 acgtcaccac caataggctc ttcgtgagtg gcgtccgaga cctgtcccag cagtgccagg
      301 gcgacaccgt catctcggaa tgtctgcaga ggttcggaga cagcctgcag gagatggtca
      361 cctaccacat gatcctgttt gaccaggccc agaggtctgt gcggcagcag ctccacaact
      421 tcgtcaaaga agacgtgcgc aagttcaagg agactaagaa gcagttcgac agggtccggg
      481 aggacatgga gctgtccctg gcgaggaacg cgcaggcccc aaggcaccgg ccgcatgagg
      541 cggaggaggc cgcgggtgcc ctggtcctcg cccggaagtg cttccgccac ctggcgctgg
      601 actacgtact ccagatcaac gttctccaag ccaagaagaa gtttgagatt ttggactcta
      661 tgctgtcctt catgcacgcc cagtacagct tcttccagca gggctacagc ctgctgcacc
      721 agctggaccc ctacatgaag aagctggcgg ctgagctgga ccagctggtg atcgactcgg
      781 cagtggaaaa gcgggaaatg gaacgcaagc atgccgccat ccagcagcgg gtgaggccct
      841 gcagccctgg ccgcgccccc gaggggcccc gggtccactg cccctcaccc cgctccacgc
      901 gaggaggacc tggggggccc agcgcacaga cacgcgcccc gtccctcccc aggctgactc
      961 tgatctttga actgcagtca gaggcggggg tccccaccct cagggtctca gcacagtgga
     1021 acggtcactt agacgccagc gccagccccc tcaggccaca gacgctgggg ctgcagctgg
     1081 gacggggatc ctactgcggc cacagctggc cgggcacggc cgggggcaga gacgggctgc
     1141 ggggcgggag ctggcgtccc cagccggcag ggagggggcg gggcttcgct cactggctct
     1201 ccccctcctc ccacctctcc tgctctcgcc ctcagacgct gctgcaggtg agtgggcgcc
     1261 caccccgggg ggaggggccc ccggtgggca gggcctctgc ccttcccgcc ccgcggcgtt
     1321 tcagcaccaa ggacacctcc acggccccgg cgcagctcag gacgcgcggc ccgctccagc
     1381 ggaggtggct gagctgggac cgcgtcccct tcgtcccctt cgtccccttc gtccccttcg
     1441 ggagcagctg cagctgtccc ttcccgcccc cactcagcca ggggagcagg tggctgggcc
     1501 tcctctccca ctgccggacg cccaggacaa cgctcagtgt ctccccagcc cgcgtgaatg
     1561 gagctctgtc aggctggtcg gggcagccca gctggcgacg tgaacggggg acagcttcct
     1621 tcctgatccc agagcctgct gctctgccag gctggggggt gggggctgga gctctccggg
     1681 cccccagctg tgacgggagg catctgcccc cacggggttt tgggtcagga agcgactgtg
     1741 aagatgcccc tcccacctcg cctctggggc agcccgagag ggcggcagtg tccccgcagc
     1801 cgcgggtggg tgctcactgg gggctgggct ccgaccaccc ccaggacttc tcctacgatg
     1861 agcccaaggt ggagtttgac gtggatgctc ccagtggtgt ggtgatggag ggctacctct
     1921 tcaagagggc cagcaacgcc ttcaagacat ggaaccggcg ctggttctcc atccagaaca
     1981 gccagctggt ctaccagaag aagctcaagg acgtgctgac cgtggtggtg gacgacctcc
     2041 ggctctgctc cgtgaagccc tgtgaggacg tcgagcgcag gttctgcttt gaggtcgtgt
     2101 cgcccaccaa gagctgcatg ctgcaggccg actcggagaa gctgcggcag gcgtgggttc
     2161 aggccgtgca agccagcatc gcgtccgcct accgggagag tcccgacagc tgctaccgcg
     2221 agaggctgga ccgcacggcg tccccgtccg caagcagcat cgactctgcc acggactctc
     2281 gggaacgcag cgccaggggc gagcgcgtgc tacagcgcgt gcagcacgtg gctgggaaca
     2341 gccagtgtgg cgactgcggg cagccggacc cgcgctgggc cagcatcaac ctgggcgtgc
     2401 tgctctgcat cgagtgctcg ggcatccaca ggagcctggg cgtccactgt tccaaggtgc
     2461 ggtccctgac cctggactcg tgggagccgg agctgctgaa gctgatgtgt gagctgggaa
     2521 acagcactgt gaaccagatc tacgaggccc agtgcgcagg gccgggcagc aggaagccca
     2581 cggccagcag ccccaggcag gacaaggagg cttggatcaa ggacaaatac gtggaaaaga
     2641 agttcgtgcg gaagccgccc tcggcaccgg cccaggaggc cccacggcgc tggcgggcgc
     2701 agaagtgccc acgccaccac agctcccccc gtgcccacac cacccgccgc agcaaaatcc
     2761 ggatggagcc cgtcccgccc tctgtggctg ctctgtgctc aggttccaca gagtccaggt
     2821 tccgcaggga ctccctcttc tgcccggatg agctggactc cctcttctcc tacttcgacg
     2881 cgggggctgc tgcagccggt ccacgcagtc tgagcagcga cagcggctta gggggcagct
     2941 ccgacggcag ctcggatgtc ctggccttcg gcgtgggctc cgtggtggac cgcgtcactg
     3001 aggaggaggg tgccgagtcg gaggagtcca gcggcgaggc agatggagag gcggaggcct
     3061 ggggcctggc ggacgtgcgc gagctgcacc ccgggctact ggcgcaccgc gcggcgcgca
     3121 ctagagacct ccccgcactg gccgcagctc tggcacaagg agccgaggtc aactgggctg
     3181 acgcggagga cgagggcaag acgccgctgg tgcaggccgt gctggggggt tccttgatca
     3241 tctgtgaatt cctcctgcaa aacggagcgg acgtgaacca aagagacagc cggggtcggg
     3301 cgcccctgca ccatgccacg ctcctgggcc gcaccggcca ggtctgcctg ttcttgaagc
     3361 ggggggcgga ccagcatgcc ttggaccaca tgcagcagga cccactgagc atcgcggtgc
     3421 aggaggcgaa tgcagacatc gtcacgcttc tccgtctggc gcgcatggcc gaggagatgc
     3481 gtgaggccga ggcgcctcct ggccagccgg ggcccctggc tggcagcagc cccaccgagc
     3541 tccagtaccg caggtgcatc caggagttca tcagcctcca cctggatgag agctagggtg
     3601 gcagggcctt ggcgggaccc ccaccggccc atttcctgag agccccggag ctcctggagc
     3661 cctgctgcct gctctgcccc cctcggagct gccctgaccc ccacggcccg gagcaggacc
     3721 ccagcactga gtcttctgaa gctccgtgtc tcccctggga ggtgctgcat cgccccaccc
     3781 agggaccccg tgtcttcggg tgacccctcc ctaggggcct gggtaggctc gcgtcacaaa
     3841 ccactctcga ggccccacat cacctcgtgc ccctctctgc tcccccaggc ccgtgtcacc
     3901 tcatgccctc tatccctggg gcccatgccg cttggtggcc caccctgccc tcagggcctg
     3961 tgtcaccttg tgcccccact ttactgccca agaacactga cctgctagta ggggccctcc
     4021 cacatcccca gaacccctcc actaggccct ggggctggtg gctggccacc ggcacgtggc
     4081 gagggcagga ggggccgccc atccagggaa tcaacccgcg tacctcactt agtgacccca
     4141 gcatccaggc tgggcttctt gggtgcttgg ggggctctgg cctggggcct tagccctggc
     4201 tgggtgcgga tgtcccgagg ccgtgtggct ggccatgcag gccctcgggc cccgtagccc
     4261 cacccatccc cccccctttt cccacagcgg gtggcagggg tgtggctctt cccacccctg
     4321 catccggcat cctttgtcac ggactgaggg gttttctaca atgatctcct tctcactttg
     4381 tttcacgtct tttctctgga ctcaaggacc actttgaccc ccagctctgc ctgctgctag
     4441 gggaggcgcc tgcagctcag ccctgccccc tcgccagcct tcccctcccc cccacctccg
     4501 gctagaccca tggggccttg gctcactacc cagggccctc tgatgccttc tgcattcccc
     4561 ttcccagagc cctggggcac cggctgggcc tctccccaac tcaggccctc ggccaggcca
     4621 aggccagttg gttgctcact atgcaaagac tgcccaggga ggccccgtgg gcagcaaggt
     4681 gggtgcggac tgggctccca gctccctctc ctgctggctg tgacccctag agagcagaat
     4741 caatgccttc ctctctccct gcttgagctc tgcccccgcc tcccgcccca ctgcctgcat
     4801 cagggccttt gctgcggcct cggctggctg gcgggacccg cctccgttgc agatcacagt
     4861 taa
//
LOCUS       XM_032609729            4833 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ArfGAP with coiled-coil, ankyrin repeat
            and PH domains 3 (ACAP3), transcript variant X2, mRNA.
ACCESSION   XM_032609729
VERSION     XM_032609729.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4833
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4833
                     /gene="ACAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742312"
     CDS             93..3566
                     /gene="ACAP3"
                     /codon_start=1
                     /product="arf-GAP with coiled-coil, ANK repeat and PH
                     domain-containing protein 3 isoform X2"
                     /protein_id="XP_032465620.1"
                     /db_xref="GeneID:116742312"
                     /translation="MTVEFEECIKDSPRFRATIDEVETDVVEIEAKLDKLVKLCSGVI
                     EAGKAYVTTNRLFVSGVRDLSQQCQGDTVISECLQRFGDSLQEMVTYHMILFDQAQRS
                     VRQQLHNFVKEDVRKFKETKKQFDRVREDMELSLARNAQAPRHRPHEAEEAAGALVLA
                     RKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYSFFQQGYSLLHQLDPYMKKL
                     AAELDQLVIDSAVEKREMERKHAAIQQRVRPCSPGRAPEGPRVHCPSPRSTRGGPGGP
                     SAQTRAPSLPRLTLIFELQSEAGVPTLRVSAQWNGHLDASASPLRPQTLGLQLGRGSY
                     CGHSWPGTAGGRDGLRGGSWRPQPAGRGRGFAHWLSPSSHLSCSRPQTLLQVSGRPPR
                     GEGPPVGRASALPAPRRFSTKDTSTAPAQLRTRGPLQRRWLSWDRVPFVPFVPFVPFG
                     SSCSCPFPPPLSQGSRWLGLLSHCRTPRTTLSVSPARVNGALSGWSGQPSWRRERGTA
                     SFLIPEPAALPGWGVGAGALRAPSCDGRHLPPRGFGSGSDCEDAPPTSPLGQPERAAV
                     SPQPRVGAHWGLGSDHPQDFSYDEPKVEFDVDAPSGVVMEGYLFKRASNAFKTWNRRW
                     FSIQNSQLVYQKKLKDVLTVVVDDLRLCSVKPCEDVERRSCMLQADSEKLRQAWVQAV
                     QASIASAYRESPDSCYRERLDRTASPSASSIDSATDSRERSARGERVLQRVQHVAGNS
                     QCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWEPELLKLMCEL
                     GNSTVNQIYEAQCAGPGSRKPTASSPRQDKEAWIKDKYVEKKFVRKPPSAPAQEAPRR
                     WRAQKCPRHHSSPRAHTTRRSKIRMEPVPPSVAALCSGSTESRFRRDSLFCPDELDSL
                     FSYFDAGAAAAGPRSLSSDSGLGGSSDGSSDVLAFGVGSVVDRVTEEEGAESEESSGE
                     ADGEAEAWGLADVRELHPGLLAHRAARTRDLPALAAALAQGAEVNWADAEDEGKTPLV
                     QAVLGGSLIICEFLLQNGADVNQRDSRGRAPLHHATLLGRTGQVCLFLKRGADQHALD
                     HMQQDPLSIAVQEANADIVTLLRLARMAEEMREAEAPPGQPGPLAGSSPTELQYRRCI
                     QEFISLHLDES"
     misc_feature    138..737
                     /gene="ACAP3"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with
                     Coiled-coil, ANK repeat and PH domain containing protein
                     3; Region: BAR_ACAP3; cd07637"
                     /db_xref="CDD:153321"
     misc_feature    order(165..167,174..179,189..191,195..200,207..212,
                     216..221,249..254,258..263,270..275,279..284,291..293,
                     333..335,342..347,618..620,627..632,636..638,651..653,
                     660..665,669..674,681..686,693..698,702..707,714..719,
                     723..728)
                     /gene="ACAP3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153321"
     misc_feature    1905..2165
                     /gene="ACAP3"
                     /note="ArfGAP with coiled-coil, ankyrin repeat and PH
                     domains Pleckstrin homology (PH) domain; Region: PH_ACAP;
                     cd13250"
                     /db_xref="CDD:270070"
     misc_feature    2271..2618
                     /gene="ACAP3"
                     /note="GTPase-activating protein (GAP) for the ADP
                     ribosylation factors (ARFs); Region: ArfGap; cl28907"
                     /db_xref="CDD:355783"
     misc_feature    order(2316..2318,2325..2327,2376..2378,2385..2387,
                     2400..2402)
                     /gene="ACAP3"
                     /note="arginine finger; other site"
                     /db_xref="CDD:350058"
     misc_feature    order(2316..2318,2325..2327,2376..2378,2385..2387)
                     /gene="ACAP3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:350058"
     misc_feature    <3069..>3422
                     /gene="ACAP3"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(3075..3080,3087..3095,3099..3104,3114..3116,
                     3123..3125,3150..3152,3162..3164,3168..3170,3180..3185,
                     3192..3200,3204..3209,3219..3221,3228..3230,3255..3257,
                     3261..3263,3267..3269,3279..3284,3291..3299,3303..3308,
                     3318..3320,3327..3329,3354..3356)
                     /gene="ACAP3"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    3162..3257
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3261..3356
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gcgcggcgcg gcgcaggcgg gcgggccggc aggggatgct gctcggggcg ccgcggtcct
       61 cgtgccagtg agcgcctcgc gccgccgcag ccatgacggt ggagttcgag gagtgcatca
      121 aggactcgcc gcgcttcagg gcaactatcg acgaggtgga aacggacgtg gttgagatcg
      181 aggccaaact ggacaagctg gtgaagctgt gcagcggcgt gatcgaggct ggcaaggcct
      241 acgtcaccac caataggctc ttcgtgagtg gcgtccgaga cctgtcccag cagtgccagg
      301 gcgacaccgt catctcggaa tgtctgcaga ggttcggaga cagcctgcag gagatggtca
      361 cctaccacat gatcctgttt gaccaggccc agaggtctgt gcggcagcag ctccacaact
      421 tcgtcaaaga agacgtgcgc aagttcaagg agactaagaa gcagttcgac agggtccggg
      481 aggacatgga gctgtccctg gcgaggaacg cgcaggcccc aaggcaccgg ccgcatgagg
      541 cggaggaggc cgcgggtgcc ctggtcctcg cccggaagtg cttccgccac ctggcgctgg
      601 actacgtact ccagatcaac gttctccaag ccaagaagaa gtttgagatt ttggactcta
      661 tgctgtcctt catgcacgcc cagtacagct tcttccagca gggctacagc ctgctgcacc
      721 agctggaccc ctacatgaag aagctggcgg ctgagctgga ccagctggtg atcgactcgg
      781 cagtggaaaa gcgggaaatg gaacgcaagc atgccgccat ccagcagcgg gtgaggccct
      841 gcagccctgg ccgcgccccc gaggggcccc gggtccactg cccctcaccc cgctccacgc
      901 gaggaggacc tggggggccc agcgcacaga cacgcgcccc gtccctcccc aggctgactc
      961 tgatctttga actgcagtca gaggcggggg tccccaccct cagggtctca gcacagtgga
     1021 acggtcactt agacgccagc gccagccccc tcaggccaca gacgctgggg ctgcagctgg
     1081 gacggggatc ctactgcggc cacagctggc cgggcacggc cgggggcaga gacgggctgc
     1141 ggggcgggag ctggcgtccc cagccggcag ggagggggcg gggcttcgct cactggctct
     1201 ccccctcctc ccacctctcc tgctctcgcc ctcagacgct gctgcaggtg agtgggcgcc
     1261 caccccgggg ggaggggccc ccggtgggca gggcctctgc ccttcccgcc ccgcggcgtt
     1321 tcagcaccaa ggacacctcc acggccccgg cgcagctcag gacgcgcggc ccgctccagc
     1381 ggaggtggct gagctgggac cgcgtcccct tcgtcccctt cgtccccttc gtccccttcg
     1441 ggagcagctg cagctgtccc ttcccgcccc cactcagcca ggggagcagg tggctgggcc
     1501 tcctctccca ctgccggacg cccaggacaa cgctcagtgt ctccccagcc cgcgtgaatg
     1561 gagctctgtc aggctggtcg gggcagccca gctggcgacg tgaacggggg acagcttcct
     1621 tcctgatccc agagcctgct gctctgccag gctggggggt gggggctgga gctctccggg
     1681 cccccagctg tgacgggagg catctgcccc cacggggttt tgggtcagga agcgactgtg
     1741 aagatgcccc tcccacctcg cctctggggc agcccgagag ggcggcagtg tccccgcagc
     1801 cgcgggtggg tgctcactgg gggctgggct ccgaccaccc ccaggacttc tcctacgatg
     1861 agcccaaggt ggagtttgac gtggatgctc ccagtggtgt ggtgatggag ggctacctct
     1921 tcaagagggc cagcaacgcc ttcaagacat ggaaccggcg ctggttctcc atccagaaca
     1981 gccagctggt ctaccagaag aagctcaagg acgtgctgac cgtggtggtg gacgacctcc
     2041 ggctctgctc cgtgaagccc tgtgaggacg tcgagcgcag gagctgcatg ctgcaggccg
     2101 actcggagaa gctgcggcag gcgtgggttc aggccgtgca agccagcatc gcgtccgcct
     2161 accgggagag tcccgacagc tgctaccgcg agaggctgga ccgcacggcg tccccgtccg
     2221 caagcagcat cgactctgcc acggactctc gggaacgcag cgccaggggc gagcgcgtgc
     2281 tacagcgcgt gcagcacgtg gctgggaaca gccagtgtgg cgactgcggg cagccggacc
     2341 cgcgctgggc cagcatcaac ctgggcgtgc tgctctgcat cgagtgctcg ggcatccaca
     2401 ggagcctggg cgtccactgt tccaaggtgc ggtccctgac cctggactcg tgggagccgg
     2461 agctgctgaa gctgatgtgt gagctgggaa acagcactgt gaaccagatc tacgaggccc
     2521 agtgcgcagg gccgggcagc aggaagccca cggccagcag ccccaggcag gacaaggagg
     2581 cttggatcaa ggacaaatac gtggaaaaga agttcgtgcg gaagccgccc tcggcaccgg
     2641 cccaggaggc cccacggcgc tggcgggcgc agaagtgccc acgccaccac agctcccccc
     2701 gtgcccacac cacccgccgc agcaaaatcc ggatggagcc cgtcccgccc tctgtggctg
     2761 ctctgtgctc aggttccaca gagtccaggt tccgcaggga ctccctcttc tgcccggatg
     2821 agctggactc cctcttctcc tacttcgacg cgggggctgc tgcagccggt ccacgcagtc
     2881 tgagcagcga cagcggctta gggggcagct ccgacggcag ctcggatgtc ctggccttcg
     2941 gcgtgggctc cgtggtggac cgcgtcactg aggaggaggg tgccgagtcg gaggagtcca
     3001 gcggcgaggc agatggagag gcggaggcct ggggcctggc ggacgtgcgc gagctgcacc
     3061 ccgggctact ggcgcaccgc gcggcgcgca ctagagacct ccccgcactg gccgcagctc
     3121 tggcacaagg agccgaggtc aactgggctg acgcggagga cgagggcaag acgccgctgg
     3181 tgcaggccgt gctggggggt tccttgatca tctgtgaatt cctcctgcaa aacggagcgg
     3241 acgtgaacca aagagacagc cggggtcggg cgcccctgca ccatgccacg ctcctgggcc
     3301 gcaccggcca ggtctgcctg ttcttgaagc ggggggcgga ccagcatgcc ttggaccaca
     3361 tgcagcagga cccactgagc atcgcggtgc aggaggcgaa tgcagacatc gtcacgcttc
     3421 tccgtctggc gcgcatggcc gaggagatgc gtgaggccga ggcgcctcct ggccagccgg
     3481 ggcccctggc tggcagcagc cccaccgagc tccagtaccg caggtgcatc caggagttca
     3541 tcagcctcca cctggatgag agctagggtg gcagggcctt ggcgggaccc ccaccggccc
     3601 atttcctgag agccccggag ctcctggagc cctgctgcct gctctgcccc cctcggagct
     3661 gccctgaccc ccacggcccg gagcaggacc ccagcactga gtcttctgaa gctccgtgtc
     3721 tcccctggga ggtgctgcat cgccccaccc agggaccccg tgtcttcggg tgacccctcc
     3781 ctaggggcct gggtaggctc gcgtcacaaa ccactctcga ggccccacat cacctcgtgc
     3841 ccctctctgc tcccccaggc ccgtgtcacc tcatgccctc tatccctggg gcccatgccg
     3901 cttggtggcc caccctgccc tcagggcctg tgtcaccttg tgcccccact ttactgccca
     3961 agaacactga cctgctagta ggggccctcc cacatcccca gaacccctcc actaggccct
     4021 ggggctggtg gctggccacc ggcacgtggc gagggcagga ggggccgccc atccagggaa
     4081 tcaacccgcg tacctcactt agtgacccca gcatccaggc tgggcttctt gggtgcttgg
     4141 ggggctctgg cctggggcct tagccctggc tgggtgcgga tgtcccgagg ccgtgtggct
     4201 ggccatgcag gccctcgggc cccgtagccc cacccatccc cccccctttt cccacagcgg
     4261 gtggcagggg tgtggctctt cccacccctg catccggcat cctttgtcac ggactgaggg
     4321 gttttctaca atgatctcct tctcactttg tttcacgtct tttctctgga ctcaaggacc
     4381 actttgaccc ccagctctgc ctgctgctag gggaggcgcc tgcagctcag ccctgccccc
     4441 tcgccagcct tcccctcccc cccacctccg gctagaccca tggggccttg gctcactacc
     4501 cagggccctc tgatgccttc tgcattcccc ttcccagagc cctggggcac cggctgggcc
     4561 tctccccaac tcaggccctc ggccaggcca aggccagttg gttgctcact atgcaaagac
     4621 tgcccaggga ggccccgtgg gcagcaaggt gggtgcggac tgggctccca gctccctctc
     4681 ctgctggctg tgacccctag agagcagaat caatgccttc ctctctccct gcttgagctc
     4741 tgcccccgcc tcccgcccca ctgcctgcat cagggccttt gctgcggcct cggctggctg
     4801 gcgggacccg cctccgttgc agatcacagt taa
//
LOCUS       XM_032609738            4458 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ArfGAP with coiled-coil, ankyrin repeat
            and PH domains 3 (ACAP3), transcript variant X3, mRNA.
ACCESSION   XM_032609738
VERSION     XM_032609738.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4458
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4458
                     /gene="ACAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742312"
     CDS             93..3191
                     /gene="ACAP3"
                     /codon_start=1
                     /product="arf-GAP with coiled-coil, ANK repeat and PH
                     domain-containing protein 3 isoform X3"
                     /protein_id="XP_032465629.1"
                     /db_xref="GeneID:116742312"
                     /translation="MTVEFEECIKDSPRFRATIDEVETDVVEIEAKLDKLVKLCSGVI
                     EAGKAYVTTNRLFVSGVRDLSQQCQGDTVISECLQRFGDSLQEMVTYHMILFDQAQRS
                     VRQQLHNFVKEDVRKFKETKKQFDRVREDMELSLARNAQAPRHRPHEAEEAAGALVLA
                     RKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYSFFQQGYSLLHQLDPYMKKL
                     AAELDQLVIDSAVEKREMERKHAAIQQRTLLQVSGRPPRGEGPPVGRASALPAPRRFS
                     TKDTSTAPAQLRTRGPLQRRWLSWDRVPFVPFVPFVPFGSSCSCPFPPPLSQGSRWLG
                     LLSHCRTPRTTLSVSPARVNGALSGWSGQPSWRRERGTASFLIPEPAALPGWGVGAGA
                     LRAPSCDGRHLPPRGFGSGSDCEDAPPTSPLGQPERAAVSPQPRVGAHWGLGSDHPQD
                     FSYDEPKVEFDVDAPSGVVMEGYLFKRASNAFKTWNRRWFSIQNSQLVYQKKLKDVLT
                     VVVDDLRLCSVKPCEDVERRFCFEVVSPTKSCMLQADSEKLRQAWVQAVQASIASAYR
                     ESPDSCYRERLDRTASPSASSIDSATDSRERSARGERVLQRVQHVAGNSQCGDCGQPD
                     PRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWEPELLKLMCELGNSTVNQIY
                     EAQCAGPGSRKPTASSPRQDKEAWIKDKYVEKKFVRKPPSAPAQEAPRRWRAQKCPRH
                     HSSPRAHTTRRSKIRMEPVPPSVAALCSGSTESRFRRDSLFCPDELDSLFSYFDAGAA
                     AAGPRSLSSDSGLGGSSDGSSDVLAFGVGSVVDRVTEEEGAESEESSGEADGEAEAWG
                     LADVRELHPGLLAHRAARTRDLPALAAALAQGAEVNWADAEDEGKTPLVQAVLGGSLI
                     ICEFLLQNGADVNQRDSRGRAPLHHATLLGRTGQVCLFLKRGADQHALDHMQQDPLSI
                     AVQEANADIVTLLRLARMAEEMREAEAPPGQPGPLAGSSPTELQYRRCIQEFISLHLD
                     ES"
     misc_feature    138..737
                     /gene="ACAP3"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with
                     Coiled-coil, ANK repeat and PH domain containing protein
                     3; Region: BAR_ACAP3; cd07637"
                     /db_xref="CDD:153321"
     misc_feature    order(165..167,174..179,189..191,195..200,207..212,
                     216..221,249..254,258..263,270..275,279..284,291..293,
                     333..335,342..347,618..620,627..632,636..638,651..653,
                     660..665,669..674,681..686,693..698,702..707,714..719,
                     723..728)
                     /gene="ACAP3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153321"
     misc_feature    1500..1790
                     /gene="ACAP3"
                     /note="ArfGAP with coiled-coil, ankyrin repeat and PH
                     domains Pleckstrin homology (PH) domain; Region: PH_ACAP;
                     cd13250"
                     /db_xref="CDD:270070"
     misc_feature    1896..2243
                     /gene="ACAP3"
                     /note="GTPase-activating protein (GAP) for the ADP
                     ribosylation factors (ARFs); Region: ArfGap; cl28907"
                     /db_xref="CDD:355783"
     misc_feature    order(1941..1943,1950..1952,2001..2003,2010..2012,
                     2025..2027)
                     /gene="ACAP3"
                     /note="arginine finger; other site"
                     /db_xref="CDD:350058"
     misc_feature    order(1941..1943,1950..1952,2001..2003,2010..2012)
                     /gene="ACAP3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:350058"
     misc_feature    <2694..>3047
                     /gene="ACAP3"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(2700..2705,2712..2720,2724..2729,2739..2741,
                     2748..2750,2775..2777,2787..2789,2793..2795,2805..2810,
                     2817..2825,2829..2834,2844..2846,2853..2855,2880..2882,
                     2886..2888,2892..2894,2904..2909,2916..2924,2928..2933,
                     2943..2945,2952..2954,2979..2981)
                     /gene="ACAP3"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2787..2882
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2886..2981
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gcgcggcgcg gcgcaggcgg gcgggccggc aggggatgct gctcggggcg ccgcggtcct
       61 cgtgccagtg agcgcctcgc gccgccgcag ccatgacggt ggagttcgag gagtgcatca
      121 aggactcgcc gcgcttcagg gcaactatcg acgaggtgga aacggacgtg gttgagatcg
      181 aggccaaact ggacaagctg gtgaagctgt gcagcggcgt gatcgaggct ggcaaggcct
      241 acgtcaccac caataggctc ttcgtgagtg gcgtccgaga cctgtcccag cagtgccagg
      301 gcgacaccgt catctcggaa tgtctgcaga ggttcggaga cagcctgcag gagatggtca
      361 cctaccacat gatcctgttt gaccaggccc agaggtctgt gcggcagcag ctccacaact
      421 tcgtcaaaga agacgtgcgc aagttcaagg agactaagaa gcagttcgac agggtccggg
      481 aggacatgga gctgtccctg gcgaggaacg cgcaggcccc aaggcaccgg ccgcatgagg
      541 cggaggaggc cgcgggtgcc ctggtcctcg cccggaagtg cttccgccac ctggcgctgg
      601 actacgtact ccagatcaac gttctccaag ccaagaagaa gtttgagatt ttggactcta
      661 tgctgtcctt catgcacgcc cagtacagct tcttccagca gggctacagc ctgctgcacc
      721 agctggaccc ctacatgaag aagctggcgg ctgagctgga ccagctggtg atcgactcgg
      781 cagtggaaaa gcgggaaatg gaacgcaagc atgccgccat ccagcagcgg acgctgctgc
      841 aggtgagtgg gcgcccaccc cggggggagg ggcccccggt gggcagggcc tctgcccttc
      901 ccgccccgcg gcgtttcagc accaaggaca cctccacggc cccggcgcag ctcaggacgc
      961 gcggcccgct ccagcggagg tggctgagct gggaccgcgt ccccttcgtc cccttcgtcc
     1021 ccttcgtccc cttcgggagc agctgcagct gtcccttccc gcccccactc agccagggga
     1081 gcaggtggct gggcctcctc tcccactgcc ggacgcccag gacaacgctc agtgtctccc
     1141 cagcccgcgt gaatggagct ctgtcaggct ggtcggggca gcccagctgg cgacgtgaac
     1201 gggggacagc ttccttcctg atcccagagc ctgctgctct gccaggctgg ggggtggggg
     1261 ctggagctct ccgggccccc agctgtgacg ggaggcatct gcccccacgg ggttttgggt
     1321 caggaagcga ctgtgaagat gcccctccca cctcgcctct ggggcagccc gagagggcgg
     1381 cagtgtcccc gcagccgcgg gtgggtgctc actgggggct gggctccgac cacccccagg
     1441 acttctccta cgatgagccc aaggtggagt ttgacgtgga tgctcccagt ggtgtggtga
     1501 tggagggcta cctcttcaag agggccagca acgccttcaa gacatggaac cggcgctggt
     1561 tctccatcca gaacagccag ctggtctacc agaagaagct caaggacgtg ctgaccgtgg
     1621 tggtggacga cctccggctc tgctccgtga agccctgtga ggacgtcgag cgcaggttct
     1681 gctttgaggt cgtgtcgccc accaagagct gcatgctgca ggccgactcg gagaagctgc
     1741 ggcaggcgtg ggttcaggcc gtgcaagcca gcatcgcgtc cgcctaccgg gagagtcccg
     1801 acagctgcta ccgcgagagg ctggaccgca cggcgtcccc gtccgcaagc agcatcgact
     1861 ctgccacgga ctctcgggaa cgcagcgcca ggggcgagcg cgtgctacag cgcgtgcagc
     1921 acgtggctgg gaacagccag tgtggcgact gcgggcagcc ggacccgcgc tgggccagca
     1981 tcaacctggg cgtgctgctc tgcatcgagt gctcgggcat ccacaggagc ctgggcgtcc
     2041 actgttccaa ggtgcggtcc ctgaccctgg actcgtggga gccggagctg ctgaagctga
     2101 tgtgtgagct gggaaacagc actgtgaacc agatctacga ggcccagtgc gcagggccgg
     2161 gcagcaggaa gcccacggcc agcagcccca ggcaggacaa ggaggcttgg atcaaggaca
     2221 aatacgtgga aaagaagttc gtgcggaagc cgccctcggc accggcccag gaggccccac
     2281 ggcgctggcg ggcgcagaag tgcccacgcc accacagctc cccccgtgcc cacaccaccc
     2341 gccgcagcaa aatccggatg gagcccgtcc cgccctctgt ggctgctctg tgctcaggtt
     2401 ccacagagtc caggttccgc agggactccc tcttctgccc ggatgagctg gactccctct
     2461 tctcctactt cgacgcgggg gctgctgcag ccggtccacg cagtctgagc agcgacagcg
     2521 gcttaggggg cagctccgac ggcagctcgg atgtcctggc cttcggcgtg ggctccgtgg
     2581 tggaccgcgt cactgaggag gagggtgccg agtcggagga gtccagcggc gaggcagatg
     2641 gagaggcgga ggcctggggc ctggcggacg tgcgcgagct gcaccccggg ctactggcgc
     2701 accgcgcggc gcgcactaga gacctccccg cactggccgc agctctggca caaggagccg
     2761 aggtcaactg ggctgacgcg gaggacgagg gcaagacgcc gctggtgcag gccgtgctgg
     2821 ggggttcctt gatcatctgt gaattcctcc tgcaaaacgg agcggacgtg aaccaaagag
     2881 acagccgggg tcgggcgccc ctgcaccatg ccacgctcct gggccgcacc ggccaggtct
     2941 gcctgttctt gaagcggggg gcggaccagc atgccttgga ccacatgcag caggacccac
     3001 tgagcatcgc ggtgcaggag gcgaatgcag acatcgtcac gcttctccgt ctggcgcgca
     3061 tggccgagga gatgcgtgag gccgaggcgc ctcctggcca gccggggccc ctggctggca
     3121 gcagccccac cgagctccag taccgcaggt gcatccagga gttcatcagc ctccacctgg
     3181 atgagagcta gggtggcagg gccttggcgg gacccccacc ggcccatttc ctgagagccc
     3241 cggagctcct ggagccctgc tgcctgctct gcccccctcg gagctgccct gacccccacg
     3301 gcccggagca ggaccccagc actgagtctt ctgaagctcc gtgtctcccc tgggaggtgc
     3361 tgcatcgccc cacccaggga ccccgtgtct tcgggtgacc cctccctagg ggcctgggta
     3421 ggctcgcgtc acaaaccact ctcgaggccc cacatcacct cgtgcccctc tctgctcccc
     3481 caggcccgtg tcacctcatg ccctctatcc ctggggccca tgccgcttgg tggcccaccc
     3541 tgccctcagg gcctgtgtca ccttgtgccc ccactttact gcccaagaac actgacctgc
     3601 tagtaggggc cctcccacat ccccagaacc cctccactag gccctggggc tggtggctgg
     3661 ccaccggcac gtggcgaggg caggaggggc cgcccatcca gggaatcaac ccgcgtacct
     3721 cacttagtga ccccagcatc caggctgggc ttcttgggtg cttggggggc tctggcctgg
     3781 ggccttagcc ctggctgggt gcggatgtcc cgaggccgtg tggctggcca tgcaggccct
     3841 cgggccccgt agccccaccc atcccccccc cttttcccac agcgggtggc aggggtgtgg
     3901 ctcttcccac ccctgcatcc ggcatccttt gtcacggact gaggggtttt ctacaatgat
     3961 ctccttctca ctttgtttca cgtcttttct ctggactcaa ggaccacttt gacccccagc
     4021 tctgcctgct gctaggggag gcgcctgcag ctcagccctg ccccctcgcc agccttcccc
     4081 tcccccccac ctccggctag acccatgggg ccttggctca ctacccaggg ccctctgatg
     4141 ccttctgcat tccccttccc agagccctgg ggcaccggct gggcctctcc ccaactcagg
     4201 ccctcggcca ggccaaggcc agttggttgc tcactatgca aagactgccc agggaggccc
     4261 cgtgggcagc aaggtgggtg cggactgggc tcccagctcc ctctcctgct ggctgtgacc
     4321 cctagagagc agaatcaatg ccttcctctc tccctgcttg agctctgccc ccgcctcccg
     4381 ccccactgcc tgcatcaggg cctttgctgc ggcctcggct ggctggcggg acccgcctcc
     4441 gttgcagatc acagttaa
//
LOCUS       XM_032609744            4266 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ArfGAP with coiled-coil, ankyrin repeat
            and PH domains 3 (ACAP3), transcript variant X4, mRNA.
ACCESSION   XM_032609744
VERSION     XM_032609744.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4266
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4266
                     /gene="ACAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742312"
     CDS             93..2999
                     /gene="ACAP3"
                     /codon_start=1
                     /product="arf-GAP with coiled-coil, ANK repeat and PH
                     domain-containing protein 3 isoform X4"
                     /protein_id="XP_032465635.1"
                     /db_xref="GeneID:116742312"
                     /translation="MTVEFEECIKDSPRFRATIDEVETDVVEIEAKLDKLVKLCSGVI
                     EAGKAYVTTNRLFVSGVRDLSQQCQGDTVISECLQRFGDSLQEMVTYHMILFDQAQRS
                     VRQQLHNFVKEDVRKFKETKKQFDRVREDMELSLARNAQAPRHRPHEAEEAAGALVLA
                     RKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYSFFQQGYSLLHQLDPYMKKL
                     AAELDQLVIDSAVEKREMERKHAAIQQRVRPCSPGRAPEGPRVHCPSPRSTRGGPGGP
                     SAQTRAPSLPRLTLIFELQSEAGVPTLRVSAQWNGHLDASASPLRPQTLGLQLGRGSY
                     CGHSWPGTAGGRDGLRGGSWRPQPAGRGRGFAHWLSPSSHLSCSRPQTLLQDFSYDEP
                     KVEFDVDAPSGVVMEGYLFKRASNAFKTWNRRWFSIQNSQLVYQKKLKDVLTVVVDDL
                     RLCSVKPCEDVERRFCFEVVSPTKSCMLQADSEKLRQAWVQAVQASIASAYRESPDSC
                     YRERLDRTASPSASSIDSATDSRERSARGERVLQRVQHVAGNSQCGDCGQPDPRWASI
                     NLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWEPELLKLMCELGNSTVNQIYEAQCAG
                     PGSRKPTASSPRQDKEAWIKDKYVEKKFVRKPPSAPAQEAPRRWRAQKCPRHHSSPRA
                     HTTRRSKIRMEPVPPSVAALCSGSTESRFRRDSLFCPDELDSLFSYFDAGAAAAGPRS
                     LSSDSGLGGSSDGSSDVLAFGVGSVVDRVTEEEGAESEESSGEADGEAEAWGLADVRE
                     LHPGLLAHRAARTRDLPALAAALAQGAEVNWADAEDEGKTPLVQAVLGGSLIICEFLL
                     QNGADVNQRDSRGRAPLHHATLLGRTGQVCLFLKRGADQHALDHMQQDPLSIAVQEAN
                     ADIVTLLRLARMAEEMREAEAPPGQPGPLAGSSPTELQYRRCIQEFISLHLDES"
     misc_feature    138..737
                     /gene="ACAP3"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with
                     Coiled-coil, ANK repeat and PH domain containing protein
                     3; Region: BAR_ACAP3; cd07637"
                     /db_xref="CDD:153321"
     misc_feature    order(165..167,174..179,189..191,195..200,207..212,
                     216..221,249..254,258..263,270..275,279..284,291..293,
                     333..335,342..347,618..620,627..632,636..638,651..653,
                     660..665,669..674,681..686,693..698,702..707,714..719,
                     723..728)
                     /gene="ACAP3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153321"
     misc_feature    1308..1598
                     /gene="ACAP3"
                     /note="ArfGAP with coiled-coil, ankyrin repeat and PH
                     domains Pleckstrin homology (PH) domain; Region: PH_ACAP;
                     cd13250"
                     /db_xref="CDD:270070"
     misc_feature    1704..2051
                     /gene="ACAP3"
                     /note="GTPase-activating protein (GAP) for the ADP
                     ribosylation factors (ARFs); Region: ArfGap; cl28907"
                     /db_xref="CDD:355783"
     misc_feature    order(1749..1751,1758..1760,1809..1811,1818..1820,
                     1833..1835)
                     /gene="ACAP3"
                     /note="arginine finger; other site"
                     /db_xref="CDD:350058"
     misc_feature    order(1749..1751,1758..1760,1809..1811,1818..1820)
                     /gene="ACAP3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:350058"
     misc_feature    <2502..>2855
                     /gene="ACAP3"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(2508..2513,2520..2528,2532..2537,2547..2549,
                     2556..2558,2583..2585,2595..2597,2601..2603,2613..2618,
                     2625..2633,2637..2642,2652..2654,2661..2663,2688..2690,
                     2694..2696,2700..2702,2712..2717,2724..2732,2736..2741,
                     2751..2753,2760..2762,2787..2789)
                     /gene="ACAP3"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2595..2690
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2694..2789
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gcgcggcgcg gcgcaggcgg gcgggccggc aggggatgct gctcggggcg ccgcggtcct
       61 cgtgccagtg agcgcctcgc gccgccgcag ccatgacggt ggagttcgag gagtgcatca
      121 aggactcgcc gcgcttcagg gcaactatcg acgaggtgga aacggacgtg gttgagatcg
      181 aggccaaact ggacaagctg gtgaagctgt gcagcggcgt gatcgaggct ggcaaggcct
      241 acgtcaccac caataggctc ttcgtgagtg gcgtccgaga cctgtcccag cagtgccagg
      301 gcgacaccgt catctcggaa tgtctgcaga ggttcggaga cagcctgcag gagatggtca
      361 cctaccacat gatcctgttt gaccaggccc agaggtctgt gcggcagcag ctccacaact
      421 tcgtcaaaga agacgtgcgc aagttcaagg agactaagaa gcagttcgac agggtccggg
      481 aggacatgga gctgtccctg gcgaggaacg cgcaggcccc aaggcaccgg ccgcatgagg
      541 cggaggaggc cgcgggtgcc ctggtcctcg cccggaagtg cttccgccac ctggcgctgg
      601 actacgtact ccagatcaac gttctccaag ccaagaagaa gtttgagatt ttggactcta
      661 tgctgtcctt catgcacgcc cagtacagct tcttccagca gggctacagc ctgctgcacc
      721 agctggaccc ctacatgaag aagctggcgg ctgagctgga ccagctggtg atcgactcgg
      781 cagtggaaaa gcgggaaatg gaacgcaagc atgccgccat ccagcagcgg gtgaggccct
      841 gcagccctgg ccgcgccccc gaggggcccc gggtccactg cccctcaccc cgctccacgc
      901 gaggaggacc tggggggccc agcgcacaga cacgcgcccc gtccctcccc aggctgactc
      961 tgatctttga actgcagtca gaggcggggg tccccaccct cagggtctca gcacagtgga
     1021 acggtcactt agacgccagc gccagccccc tcaggccaca gacgctgggg ctgcagctgg
     1081 gacggggatc ctactgcggc cacagctggc cgggcacggc cgggggcaga gacgggctgc
     1141 ggggcgggag ctggcgtccc cagccggcag ggagggggcg gggcttcgct cactggctct
     1201 ccccctcctc ccacctctcc tgctctcgcc ctcagacgct gctgcaggac ttctcctacg
     1261 atgagcccaa ggtggagttt gacgtggatg ctcccagtgg tgtggtgatg gagggctacc
     1321 tcttcaagag ggccagcaac gccttcaaga catggaaccg gcgctggttc tccatccaga
     1381 acagccagct ggtctaccag aagaagctca aggacgtgct gaccgtggtg gtggacgacc
     1441 tccggctctg ctccgtgaag ccctgtgagg acgtcgagcg caggttctgc tttgaggtcg
     1501 tgtcgcccac caagagctgc atgctgcagg ccgactcgga gaagctgcgg caggcgtggg
     1561 ttcaggccgt gcaagccagc atcgcgtccg cctaccggga gagtcccgac agctgctacc
     1621 gcgagaggct ggaccgcacg gcgtccccgt ccgcaagcag catcgactct gccacggact
     1681 ctcgggaacg cagcgccagg ggcgagcgcg tgctacagcg cgtgcagcac gtggctggga
     1741 acagccagtg tggcgactgc gggcagccgg acccgcgctg ggccagcatc aacctgggcg
     1801 tgctgctctg catcgagtgc tcgggcatcc acaggagcct gggcgtccac tgttccaagg
     1861 tgcggtccct gaccctggac tcgtgggagc cggagctgct gaagctgatg tgtgagctgg
     1921 gaaacagcac tgtgaaccag atctacgagg cccagtgcgc agggccgggc agcaggaagc
     1981 ccacggccag cagccccagg caggacaagg aggcttggat caaggacaaa tacgtggaaa
     2041 agaagttcgt gcggaagccg ccctcggcac cggcccagga ggccccacgg cgctggcggg
     2101 cgcagaagtg cccacgccac cacagctccc cccgtgccca caccacccgc cgcagcaaaa
     2161 tccggatgga gcccgtcccg ccctctgtgg ctgctctgtg ctcaggttcc acagagtcca
     2221 ggttccgcag ggactccctc ttctgcccgg atgagctgga ctccctcttc tcctacttcg
     2281 acgcgggggc tgctgcagcc ggtccacgca gtctgagcag cgacagcggc ttagggggca
     2341 gctccgacgg cagctcggat gtcctggcct tcggcgtggg ctccgtggtg gaccgcgtca
     2401 ctgaggagga gggtgccgag tcggaggagt ccagcggcga ggcagatgga gaggcggagg
     2461 cctggggcct ggcggacgtg cgcgagctgc accccgggct actggcgcac cgcgcggcgc
     2521 gcactagaga cctccccgca ctggccgcag ctctggcaca aggagccgag gtcaactggg
     2581 ctgacgcgga ggacgagggc aagacgccgc tggtgcaggc cgtgctgggg ggttccttga
     2641 tcatctgtga attcctcctg caaaacggag cggacgtgaa ccaaagagac agccggggtc
     2701 gggcgcccct gcaccatgcc acgctcctgg gccgcaccgg ccaggtctgc ctgttcttga
     2761 agcggggggc ggaccagcat gccttggacc acatgcagca ggacccactg agcatcgcgg
     2821 tgcaggaggc gaatgcagac atcgtcacgc ttctccgtct ggcgcgcatg gccgaggaga
     2881 tgcgtgaggc cgaggcgcct cctggccagc cggggcccct ggctggcagc agccccaccg
     2941 agctccagta ccgcaggtgc atccaggagt tcatcagcct ccacctggat gagagctagg
     3001 gtggcagggc cttggcggga cccccaccgg cccatttcct gagagccccg gagctcctgg
     3061 agccctgctg cctgctctgc ccccctcgga gctgccctga cccccacggc ccggagcagg
     3121 accccagcac tgagtcttct gaagctccgt gtctcccctg ggaggtgctg catcgcccca
     3181 cccagggacc ccgtgtcttc gggtgacccc tccctagggg cctgggtagg ctcgcgtcac
     3241 aaaccactct cgaggcccca catcacctcg tgcccctctc tgctccccca ggcccgtgtc
     3301 acctcatgcc ctctatccct ggggcccatg ccgcttggtg gcccaccctg ccctcagggc
     3361 ctgtgtcacc ttgtgccccc actttactgc ccaagaacac tgacctgcta gtaggggccc
     3421 tcccacatcc ccagaacccc tccactaggc cctggggctg gtggctggcc accggcacgt
     3481 ggcgagggca ggaggggccg cccatccagg gaatcaaccc gcgtacctca cttagtgacc
     3541 ccagcatcca ggctgggctt cttgggtgct tggggggctc tggcctgggg ccttagccct
     3601 ggctgggtgc ggatgtcccg aggccgtgtg gctggccatg caggccctcg ggccccgtag
     3661 ccccacccat ccccccccct tttcccacag cgggtggcag gggtgtggct cttcccaccc
     3721 ctgcatccgg catcctttgt cacggactga ggggttttct acaatgatct ccttctcact
     3781 ttgtttcacg tcttttctct ggactcaagg accactttga cccccagctc tgcctgctgc
     3841 taggggaggc gcctgcagct cagccctgcc ccctcgccag ccttcccctc ccccccacct
     3901 ccggctagac ccatggggcc ttggctcact acccagggcc ctctgatgcc ttctgcattc
     3961 cccttcccag agccctgggg caccggctgg gcctctcccc aactcaggcc ctcggccagg
     4021 ccaaggccag ttggttgctc actatgcaaa gactgcccag ggaggccccg tgggcagcaa
     4081 ggtgggtgcg gactgggctc ccagctccct ctcctgctgg ctgtgacccc tagagagcag
     4141 aatcaatgcc ttcctctctc cctgcttgag ctctgccccc gcctcccgcc ccactgcctg
     4201 catcagggcc tttgctgcgg cctcggctgg ctggcgggac ccgcctccgt tgcagatcac
     4261 agttaa
//
LOCUS       XM_032609754            4082 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ArfGAP with coiled-coil, ankyrin repeat
            and PH domains 3 (ACAP3), transcript variant X5, mRNA.
ACCESSION   XM_032609754
VERSION     XM_032609754.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4082
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4082
                     /gene="ACAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742312"
     CDS             152..2815
                     /gene="ACAP3"
                     /codon_start=1
                     /product="arf-GAP with coiled-coil, ANK repeat and PH
                     domain-containing protein 3 isoform X5"
                     /protein_id="XP_032465645.1"
                     /db_xref="GeneID:116742312"
                     /translation="MPPSSSGLTLIFELQSEAGVPTLRVSAQWNGHLDASASPLRPQT
                     LGLQLGRGSYCGHSWPGTAGGRDGLRGGSWRPQPAGRGRGFAHWLSPSSHLSCSRPQT
                     LLQVSGRPPRGEGPPVGRASALPAPRRFSTKDTSTAPAQLRTRGPLQRRWLSWDRVPF
                     VPFVPFVPFGSSCSCPFPPPLSQGSRWLGLLSHCRTPRTTLSVSPARVNGALSGWSGQ
                     PSWRRERGTASFLIPEPAALPGWGVGAGALRAPSCDGRHLPPRGFGSGSDCEDAPPTS
                     PLGQPERAAVSPQPRVGAHWGLGSDHPQDFSYDEPKVEFDVDAPSGVVMEGYLFKRAS
                     NAFKTWNRRWFSIQNSQLVYQKKLKDVLTVVVDDLRLCSVKPCEDVERRFCFEVVSPT
                     KSCMLQADSEKLRQAWVQAVQASIASAYRESPDSCYRERLDRTASPSASSIDSATDSR
                     ERSARGERVLQRVQHVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSK
                     VRSLTLDSWEPELLKLMCELGNSTVNQIYEAQCAGPGSRKPTASSPRQDKEAWIKDKY
                     VEKKFVRKPPSAPAQEAPRRWRAQKCPRHHSSPRAHTTRRSKIRMEPVPPSVAALCSG
                     STESRFRRDSLFCPDELDSLFSYFDAGAAAAGPRSLSSDSGLGGSSDGSSDVLAFGVG
                     SVVDRVTEEEGAESEESSGEADGEAEAWGLADVRELHPGLLAHRAARTRDLPALAAAL
                     AQGAEVNWADAEDEGKTPLVQAVLGGSLIICEFLLQNGADVNQRDSRGRAPLHHATLL
                     GRTGQVCLFLKRGADQHALDHMQQDPLSIAVQEANADIVTLLRLARMAEEMREAEAPP
                     GQPGPLAGSSPTELQYRRCIQEFISLHLDES"
     misc_feature    1124..1414
                     /gene="ACAP3"
                     /note="ArfGAP with coiled-coil, ankyrin repeat and PH
                     domains Pleckstrin homology (PH) domain; Region: PH_ACAP;
                     cd13250"
                     /db_xref="CDD:270070"
     misc_feature    1520..1867
                     /gene="ACAP3"
                     /note="GTPase-activating protein (GAP) for the ADP
                     ribosylation factors (ARFs); Region: ArfGap; cl28907"
                     /db_xref="CDD:355783"
     misc_feature    order(1565..1567,1574..1576,1625..1627,1634..1636,
                     1649..1651)
                     /gene="ACAP3"
                     /note="arginine finger; other site"
                     /db_xref="CDD:350058"
     misc_feature    order(1565..1567,1574..1576,1625..1627,1634..1636)
                     /gene="ACAP3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:350058"
     misc_feature    <2318..>2671
                     /gene="ACAP3"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(2324..2329,2336..2344,2348..2353,2363..2365,
                     2372..2374,2399..2401,2411..2413,2417..2419,2429..2434,
                     2441..2449,2453..2458,2468..2470,2477..2479,2504..2506,
                     2510..2512,2516..2518,2528..2533,2540..2548,2552..2557,
                     2567..2569,2576..2578,2603..2605)
                     /gene="ACAP3"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2411..2506
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2510..2605
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 atgctgtcct tcatgcacgc ccagtacagc ttcttccagc agggctacag cctgctgcac
       61 cagctggacc cctacatgaa gaagctggcg gctgagctgg accagctggt gatcgactcg
      121 gcagtggaaa agcgggaaat ggaacgcaag catgccgcca tccagcagcg ggctgactct
      181 gatctttgaa ctgcagtcag aggcgggggt ccccaccctc agggtctcag cacagtggaa
      241 cggtcactta gacgccagcg ccagccccct caggccacag acgctggggc tgcagctggg
      301 acggggatcc tactgcggcc acagctggcc gggcacggcc gggggcagag acgggctgcg
      361 gggcgggagc tggcgtcccc agccggcagg gagggggcgg ggcttcgctc actggctctc
      421 cccctcctcc cacctctcct gctctcgccc tcagacgctg ctgcaggtga gtgggcgccc
      481 accccggggg gaggggcccc cggtgggcag ggcctctgcc cttcccgccc cgcggcgttt
      541 cagcaccaag gacacctcca cggccccggc gcagctcagg acgcgcggcc cgctccagcg
      601 gaggtggctg agctgggacc gcgtcccctt cgtccccttc gtccccttcg tccccttcgg
      661 gagcagctgc agctgtccct tcccgccccc actcagccag gggagcaggt ggctgggcct
      721 cctctcccac tgccggacgc ccaggacaac gctcagtgtc tccccagccc gcgtgaatgg
      781 agctctgtca ggctggtcgg ggcagcccag ctggcgacgt gaacggggga cagcttcctt
      841 cctgatccca gagcctgctg ctctgccagg ctggggggtg ggggctggag ctctccgggc
      901 ccccagctgt gacgggaggc atctgccccc acggggtttt gggtcaggaa gcgactgtga
      961 agatgcccct cccacctcgc ctctggggca gcccgagagg gcggcagtgt ccccgcagcc
     1021 gcgggtgggt gctcactggg ggctgggctc cgaccacccc caggacttct cctacgatga
     1081 gcccaaggtg gagtttgacg tggatgctcc cagtggtgtg gtgatggagg gctacctctt
     1141 caagagggcc agcaacgcct tcaagacatg gaaccggcgc tggttctcca tccagaacag
     1201 ccagctggtc taccagaaga agctcaagga cgtgctgacc gtggtggtgg acgacctccg
     1261 gctctgctcc gtgaagccct gtgaggacgt cgagcgcagg ttctgctttg aggtcgtgtc
     1321 gcccaccaag agctgcatgc tgcaggccga ctcggagaag ctgcggcagg cgtgggttca
     1381 ggccgtgcaa gccagcatcg cgtccgccta ccgggagagt cccgacagct gctaccgcga
     1441 gaggctggac cgcacggcgt ccccgtccgc aagcagcatc gactctgcca cggactctcg
     1501 ggaacgcagc gccaggggcg agcgcgtgct acagcgcgtg cagcacgtgg ctgggaacag
     1561 ccagtgtggc gactgcgggc agccggaccc gcgctgggcc agcatcaacc tgggcgtgct
     1621 gctctgcatc gagtgctcgg gcatccacag gagcctgggc gtccactgtt ccaaggtgcg
     1681 gtccctgacc ctggactcgt gggagccgga gctgctgaag ctgatgtgtg agctgggaaa
     1741 cagcactgtg aaccagatct acgaggccca gtgcgcaggg ccgggcagca ggaagcccac
     1801 ggccagcagc cccaggcagg acaaggaggc ttggatcaag gacaaatacg tggaaaagaa
     1861 gttcgtgcgg aagccgccct cggcaccggc ccaggaggcc ccacggcgct ggcgggcgca
     1921 gaagtgccca cgccaccaca gctccccccg tgcccacacc acccgccgca gcaaaatccg
     1981 gatggagccc gtcccgccct ctgtggctgc tctgtgctca ggttccacag agtccaggtt
     2041 ccgcagggac tccctcttct gcccggatga gctggactcc ctcttctcct acttcgacgc
     2101 gggggctgct gcagccggtc cacgcagtct gagcagcgac agcggcttag ggggcagctc
     2161 cgacggcagc tcggatgtcc tggccttcgg cgtgggctcc gtggtggacc gcgtcactga
     2221 ggaggagggt gccgagtcgg aggagtccag cggcgaggca gatggagagg cggaggcctg
     2281 gggcctggcg gacgtgcgcg agctgcaccc cgggctactg gcgcaccgcg cggcgcgcac
     2341 tagagacctc cccgcactgg ccgcagctct ggcacaagga gccgaggtca actgggctga
     2401 cgcggaggac gagggcaaga cgccgctggt gcaggccgtg ctggggggtt ccttgatcat
     2461 ctgtgaattc ctcctgcaaa acggagcgga cgtgaaccaa agagacagcc ggggtcgggc
     2521 gcccctgcac catgccacgc tcctgggccg caccggccag gtctgcctgt tcttgaagcg
     2581 gggggcggac cagcatgcct tggaccacat gcagcaggac ccactgagca tcgcggtgca
     2641 ggaggcgaat gcagacatcg tcacgcttct ccgtctggcg cgcatggccg aggagatgcg
     2701 tgaggccgag gcgcctcctg gccagccggg gcccctggct ggcagcagcc ccaccgagct
     2761 ccagtaccgc aggtgcatcc aggagttcat cagcctccac ctggatgaga gctagggtgg
     2821 cagggccttg gcgggacccc caccggccca tttcctgaga gccccggagc tcctggagcc
     2881 ctgctgcctg ctctgccccc ctcggagctg ccctgacccc cacggcccgg agcaggaccc
     2941 cagcactgag tcttctgaag ctccgtgtct cccctgggag gtgctgcatc gccccaccca
     3001 gggaccccgt gtcttcgggt gacccctccc taggggcctg ggtaggctcg cgtcacaaac
     3061 cactctcgag gccccacatc acctcgtgcc cctctctgct cccccaggcc cgtgtcacct
     3121 catgccctct atccctgggg cccatgccgc ttggtggccc accctgccct cagggcctgt
     3181 gtcaccttgt gcccccactt tactgcccaa gaacactgac ctgctagtag gggccctccc
     3241 acatccccag aacccctcca ctaggccctg gggctggtgg ctggccaccg gcacgtggcg
     3301 agggcaggag gggccgccca tccagggaat caacccgcgt acctcactta gtgaccccag
     3361 catccaggct gggcttcttg ggtgcttggg gggctctggc ctggggcctt agccctggct
     3421 gggtgcggat gtcccgaggc cgtgtggctg gccatgcagg ccctcgggcc ccgtagcccc
     3481 acccatcccc cccccttttc ccacagcggg tggcaggggt gtggctcttc ccacccctgc
     3541 atccggcatc ctttgtcacg gactgagggg ttttctacaa tgatctcctt ctcactttgt
     3601 ttcacgtctt ttctctggac tcaaggacca ctttgacccc cagctctgcc tgctgctagg
     3661 ggaggcgcct gcagctcagc cctgccccct cgccagcctt cccctccccc ccacctccgg
     3721 ctagacccat ggggccttgg ctcactaccc agggccctct gatgccttct gcattcccct
     3781 tcccagagcc ctggggcacc ggctgggcct ctccccaact caggccctcg gccaggccaa
     3841 ggccagttgg ttgctcacta tgcaaagact gcccagggag gccccgtggg cagcaaggtg
     3901 ggtgcggact gggctcccag ctccctctcc tgctggctgt gacccctaga gagcagaatc
     3961 aatgccttcc tctctccctg cttgagctct gcccccgcct cccgccccac tgcctgcatc
     4021 agggcctttg ctgcggcctc ggctggctgg cgggacccgc ctccgttgca gatcacagtt
     4081 aa
//
LOCUS       XM_032609763            3861 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ArfGAP with coiled-coil, ankyrin repeat
            and PH domains 3 (ACAP3), transcript variant X6, mRNA.
ACCESSION   XM_032609763
VERSION     XM_032609763.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3861
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3861
                     /gene="ACAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742312"
     CDS             93..2594
                     /gene="ACAP3"
                     /codon_start=1
                     /product="arf-GAP with coiled-coil, ANK repeat and PH
                     domain-containing protein 3 isoform X6"
                     /protein_id="XP_032465654.1"
                     /db_xref="GeneID:116742312"
                     /translation="MTVEFEECIKDSPRFRATIDEVETDVVEIEAKLDKLVKLCSGVI
                     EAGKAYVTTNRLFVSGVRDLSQQCQGDTVISECLQRFGDSLQEMVTYHMILFDQAQRS
                     VRQQLHNFVKEDVRKFKETKKQFDRVREDMELSLARNAQAPRHRPHEAEEAAGALVLA
                     RKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYSFFQQGYSLLHQLDPYMKKL
                     AAELDQLVIDSAVEKREMERKHAAIQQRTLLQDFSYDEPKVEFDVDAPSGVVMEGYLF
                     KRASNAFKTWNRRWFSIQNSQLVYQKKLKDVLTVVVDDLRLCSVKPCEDVERRFCFEV
                     VSPTKSCMLQADSEKLRQAWVQAVQASIASAYRESPDSCYRERLDRTASPSASSIDSA
                     TDSRERSARGERVLQRVQHVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGV
                     HCSKVRSLTLDSWEPELLKLMCELGNSTVNQIYEAQCAGPGSRKPTASSPRQDKEAWI
                     KDKYVEKKFVRKPPSAPAQEAPRRWRAQKCPRHHSSPRAHTTRRSKIRMEPVPPSVAA
                     LCSGSTESRFRRDSLFCPDELDSLFSYFDAGAAAAGPRSLSSDSGLGGSSDGSSDVLA
                     FGVGSVVDRVTEEEGAESEESSGEADGEAEAWGLADVRELHPGLLAHRAARTRDLPAL
                     AAALAQGAEVNWADAEDEGKTPLVQAVLGGSLIICEFLLQNGADVNQRDSRGRAPLHH
                     ATLLGRTGQVCLFLKRGADQHALDHMQQDPLSIAVQEANADIVTLLRLARMAEEMREA
                     EAPPGQPGPLAGSSPTELQYRRCIQEFISLHLDES"
     misc_feature    138..737
                     /gene="ACAP3"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; Region: BAR; cl12013"
                     /db_xref="CDD:472257"
     misc_feature    order(165..167,174..179,189..191,195..200,207..212,
                     216..221,249..254,258..263,270..275,279..284,291..293,
                     333..335,342..347,618..620,627..632,636..638,651..653,
                     660..665,669..674,681..686,693..698,702..707,714..719,
                     723..728)
                     /gene="ACAP3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153321"
     misc_feature    903..1193
                     /gene="ACAP3"
                     /note="ArfGAP with coiled-coil, ankyrin repeat and PH
                     domains Pleckstrin homology (PH) domain; Region: PH_ACAP;
                     cd13250"
                     /db_xref="CDD:270070"
     misc_feature    1299..1646
                     /gene="ACAP3"
                     /note="GTPase-activating protein (GAP) for the ADP
                     ribosylation factors (ARFs); Region: ArfGap; cl28907"
                     /db_xref="CDD:355783"
     misc_feature    order(1344..1346,1353..1355,1404..1406,1413..1415,
                     1428..1430)
                     /gene="ACAP3"
                     /note="arginine finger; other site"
                     /db_xref="CDD:350058"
     misc_feature    order(1344..1346,1353..1355,1404..1406,1413..1415)
                     /gene="ACAP3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:350058"
     misc_feature    <2097..>2450
                     /gene="ACAP3"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(2103..2108,2115..2123,2127..2132,2142..2144,
                     2151..2153,2178..2180,2190..2192,2196..2198,2208..2213,
                     2220..2228,2232..2237,2247..2249,2256..2258,2283..2285,
                     2289..2291,2295..2297,2307..2312,2319..2327,2331..2336,
                     2346..2348,2355..2357,2382..2384)
                     /gene="ACAP3"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2190..2285
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2289..2384
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gcgcggcgcg gcgcaggcgg gcgggccggc aggggatgct gctcggggcg ccgcggtcct
       61 cgtgccagtg agcgcctcgc gccgccgcag ccatgacggt ggagttcgag gagtgcatca
      121 aggactcgcc gcgcttcagg gcaactatcg acgaggtgga aacggacgtg gttgagatcg
      181 aggccaaact ggacaagctg gtgaagctgt gcagcggcgt gatcgaggct ggcaaggcct
      241 acgtcaccac caataggctc ttcgtgagtg gcgtccgaga cctgtcccag cagtgccagg
      301 gcgacaccgt catctcggaa tgtctgcaga ggttcggaga cagcctgcag gagatggtca
      361 cctaccacat gatcctgttt gaccaggccc agaggtctgt gcggcagcag ctccacaact
      421 tcgtcaaaga agacgtgcgc aagttcaagg agactaagaa gcagttcgac agggtccggg
      481 aggacatgga gctgtccctg gcgaggaacg cgcaggcccc aaggcaccgg ccgcatgagg
      541 cggaggaggc cgcgggtgcc ctggtcctcg cccggaagtg cttccgccac ctggcgctgg
      601 actacgtact ccagatcaac gttctccaag ccaagaagaa gtttgagatt ttggactcta
      661 tgctgtcctt catgcacgcc cagtacagct tcttccagca gggctacagc ctgctgcacc
      721 agctggaccc ctacatgaag aagctggcgg ctgagctgga ccagctggtg atcgactcgg
      781 cagtggaaaa gcgggaaatg gaacgcaagc atgccgccat ccagcagcgg acgctgctgc
      841 aggacttctc ctacgatgag cccaaggtgg agtttgacgt ggatgctccc agtggtgtgg
      901 tgatggaggg ctacctcttc aagagggcca gcaacgcctt caagacatgg aaccggcgct
      961 ggttctccat ccagaacagc cagctggtct accagaagaa gctcaaggac gtgctgaccg
     1021 tggtggtgga cgacctccgg ctctgctccg tgaagccctg tgaggacgtc gagcgcaggt
     1081 tctgctttga ggtcgtgtcg cccaccaaga gctgcatgct gcaggccgac tcggagaagc
     1141 tgcggcaggc gtgggttcag gccgtgcaag ccagcatcgc gtccgcctac cgggagagtc
     1201 ccgacagctg ctaccgcgag aggctggacc gcacggcgtc cccgtccgca agcagcatcg
     1261 actctgccac ggactctcgg gaacgcagcg ccaggggcga gcgcgtgcta cagcgcgtgc
     1321 agcacgtggc tgggaacagc cagtgtggcg actgcgggca gccggacccg cgctgggcca
     1381 gcatcaacct gggcgtgctg ctctgcatcg agtgctcggg catccacagg agcctgggcg
     1441 tccactgttc caaggtgcgg tccctgaccc tggactcgtg ggagccggag ctgctgaagc
     1501 tgatgtgtga gctgggaaac agcactgtga accagatcta cgaggcccag tgcgcagggc
     1561 cgggcagcag gaagcccacg gccagcagcc ccaggcagga caaggaggct tggatcaagg
     1621 acaaatacgt ggaaaagaag ttcgtgcgga agccgccctc ggcaccggcc caggaggccc
     1681 cacggcgctg gcgggcgcag aagtgcccac gccaccacag ctccccccgt gcccacacca
     1741 cccgccgcag caaaatccgg atggagcccg tcccgccctc tgtggctgct ctgtgctcag
     1801 gttccacaga gtccaggttc cgcagggact ccctcttctg cccggatgag ctggactccc
     1861 tcttctccta cttcgacgcg ggggctgctg cagccggtcc acgcagtctg agcagcgaca
     1921 gcggcttagg gggcagctcc gacggcagct cggatgtcct ggccttcggc gtgggctccg
     1981 tggtggaccg cgtcactgag gaggagggtg ccgagtcgga ggagtccagc ggcgaggcag
     2041 atggagaggc ggaggcctgg ggcctggcgg acgtgcgcga gctgcacccc gggctactgg
     2101 cgcaccgcgc ggcgcgcact agagacctcc ccgcactggc cgcagctctg gcacaaggag
     2161 ccgaggtcaa ctgggctgac gcggaggacg agggcaagac gccgctggtg caggccgtgc
     2221 tggggggttc cttgatcatc tgtgaattcc tcctgcaaaa cggagcggac gtgaaccaaa
     2281 gagacagccg gggtcgggcg cccctgcacc atgccacgct cctgggccgc accggccagg
     2341 tctgcctgtt cttgaagcgg ggggcggacc agcatgcctt ggaccacatg cagcaggacc
     2401 cactgagcat cgcggtgcag gaggcgaatg cagacatcgt cacgcttctc cgtctggcgc
     2461 gcatggccga ggagatgcgt gaggccgagg cgcctcctgg ccagccgggg cccctggctg
     2521 gcagcagccc caccgagctc cagtaccgca ggtgcatcca ggagttcatc agcctccacc
     2581 tggatgagag ctagggtggc agggccttgg cgggaccccc accggcccat ttcctgagag
     2641 ccccggagct cctggagccc tgctgcctgc tctgcccccc tcggagctgc cctgaccccc
     2701 acggcccgga gcaggacccc agcactgagt cttctgaagc tccgtgtctc ccctgggagg
     2761 tgctgcatcg ccccacccag ggaccccgtg tcttcgggtg acccctccct aggggcctgg
     2821 gtaggctcgc gtcacaaacc actctcgagg ccccacatca cctcgtgccc ctctctgctc
     2881 ccccaggccc gtgtcacctc atgccctcta tccctggggc ccatgccgct tggtggccca
     2941 ccctgccctc agggcctgtg tcaccttgtg cccccacttt actgcccaag aacactgacc
     3001 tgctagtagg ggccctccca catccccaga acccctccac taggccctgg ggctggtggc
     3061 tggccaccgg cacgtggcga gggcaggagg ggccgcccat ccagggaatc aacccgcgta
     3121 cctcacttag tgaccccagc atccaggctg ggcttcttgg gtgcttgggg ggctctggcc
     3181 tggggcctta gccctggctg ggtgcggatg tcccgaggcc gtgtggctgg ccatgcaggc
     3241 cctcgggccc cgtagcccca cccatccccc ccccttttcc cacagcgggt ggcaggggtg
     3301 tggctcttcc cacccctgca tccggcatcc tttgtcacgg actgaggggt tttctacaat
     3361 gatctccttc tcactttgtt tcacgtcttt tctctggact caaggaccac tttgaccccc
     3421 agctctgcct gctgctaggg gaggcgcctg cagctcagcc ctgccccctc gccagccttc
     3481 ccctcccccc cacctccggc tagacccatg gggccttggc tcactaccca gggccctctg
     3541 atgccttctg cattcccctt cccagagccc tggggcaccg gctgggcctc tccccaactc
     3601 aggccctcgg ccaggccaag gccagttggt tgctcactat gcaaagactg cccagggagg
     3661 ccccgtgggc agcaaggtgg gtgcggactg ggctcccagc tccctctcct gctggctgtg
     3721 acccctagag agcagaatca atgccttcct ctctccctgc ttgagctctg cccccgcctc
     3781 ccgccccact gcctgcatca gggcctttgc tgcggcctcg gctggctggc gggacccgcc
     3841 tccgttgcag atcacagtta a
//
LOCUS       XM_032609773            3849 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ArfGAP with coiled-coil, ankyrin repeat
            and PH domains 3 (ACAP3), transcript variant X7, mRNA.
ACCESSION   XM_032609773
VERSION     XM_032609773.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3849
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3849
                     /gene="ACAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742312"
     CDS             93..2582
                     /gene="ACAP3"
                     /codon_start=1
                     /product="arf-GAP with coiled-coil, ANK repeat and PH
                     domain-containing protein 3 isoform X7"
                     /protein_id="XP_032465664.1"
                     /db_xref="GeneID:116742312"
                     /translation="MTVEFEECIKDSPRFRATIDEVETDVVEIEAKLDKLVKLCSGVI
                     EAGKAYVTTNRLFVSGVRDLSQQCQGDTVISECLQRFGDSLQEMVTYHMILFDQAQRS
                     VRQQLHNFVKEDVRKFKETKKQFDRVREDMELSLARNAQAPRHRPHEAEEAAGALVLA
                     RKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYSFFQQGYSLLHQLDPYMKKL
                     AAELDQLVIDSAVEKREMERKHAAIQQRDFSYDEPKVEFDVDAPSGVVMEGYLFKRAS
                     NAFKTWNRRWFSIQNSQLVYQKKLKDVLTVVVDDLRLCSVKPCEDVERRFCFEVVSPT
                     KSCMLQADSEKLRQAWVQAVQASIASAYRESPDSCYRERLDRTASPSASSIDSATDSR
                     ERSARGERVLQRVQHVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSK
                     VRSLTLDSWEPELLKLMCELGNSTVNQIYEAQCAGPGSRKPTASSPRQDKEAWIKDKY
                     VEKKFVRKPPSAPAQEAPRRWRAQKCPRHHSSPRAHTTRRSKIRMEPVPPSVAALCSG
                     STESRFRRDSLFCPDELDSLFSYFDAGAAAAGPRSLSSDSGLGGSSDGSSDVLAFGVG
                     SVVDRVTEEEGAESEESSGEADGEAEAWGLADVRELHPGLLAHRAARTRDLPALAAAL
                     AQGAEVNWADAEDEGKTPLVQAVLGGSLIICEFLLQNGADVNQRDSRGRAPLHHATLL
                     GRTGQVCLFLKRGADQHALDHMQQDPLSIAVQEANADIVTLLRLARMAEEMREAEAPP
                     GQPGPLAGSSPTELQYRRCIQEFISLHLDES"
     misc_feature    138..737
                     /gene="ACAP3"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; Region: BAR; cl12013"
                     /db_xref="CDD:472257"
     misc_feature    order(165..167,174..179,189..191,195..200,207..212,
                     216..221,249..254,258..263,270..275,279..284,291..293,
                     333..335,342..347,618..620,627..632,636..638,651..653,
                     660..665,669..674,681..686,693..698,702..707,714..719,
                     723..728)
                     /gene="ACAP3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153321"
     misc_feature    891..1181
                     /gene="ACAP3"
                     /note="ArfGAP with coiled-coil, ankyrin repeat and PH
                     domains Pleckstrin homology (PH) domain; Region: PH_ACAP;
                     cd13250"
                     /db_xref="CDD:270070"
     misc_feature    1287..1634
                     /gene="ACAP3"
                     /note="GTPase-activating protein (GAP) for the ADP
                     ribosylation factors (ARFs); Region: ArfGap; cl28907"
                     /db_xref="CDD:355783"
     misc_feature    order(1332..1334,1341..1343,1392..1394,1401..1403,
                     1416..1418)
                     /gene="ACAP3"
                     /note="arginine finger; other site"
                     /db_xref="CDD:350058"
     misc_feature    order(1332..1334,1341..1343,1392..1394,1401..1403)
                     /gene="ACAP3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:350058"
     misc_feature    <2085..>2438
                     /gene="ACAP3"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(2091..2096,2103..2111,2115..2120,2130..2132,
                     2139..2141,2166..2168,2178..2180,2184..2186,2196..2201,
                     2208..2216,2220..2225,2235..2237,2244..2246,2271..2273,
                     2277..2279,2283..2285,2295..2300,2307..2315,2319..2324,
                     2334..2336,2343..2345,2370..2372)
                     /gene="ACAP3"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2178..2273
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2277..2372
                     /gene="ACAP3"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gcgcggcgcg gcgcaggcgg gcgggccggc aggggatgct gctcggggcg ccgcggtcct
       61 cgtgccagtg agcgcctcgc gccgccgcag ccatgacggt ggagttcgag gagtgcatca
      121 aggactcgcc gcgcttcagg gcaactatcg acgaggtgga aacggacgtg gttgagatcg
      181 aggccaaact ggacaagctg gtgaagctgt gcagcggcgt gatcgaggct ggcaaggcct
      241 acgtcaccac caataggctc ttcgtgagtg gcgtccgaga cctgtcccag cagtgccagg
      301 gcgacaccgt catctcggaa tgtctgcaga ggttcggaga cagcctgcag gagatggtca
      361 cctaccacat gatcctgttt gaccaggccc agaggtctgt gcggcagcag ctccacaact
      421 tcgtcaaaga agacgtgcgc aagttcaagg agactaagaa gcagttcgac agggtccggg
      481 aggacatgga gctgtccctg gcgaggaacg cgcaggcccc aaggcaccgg ccgcatgagg
      541 cggaggaggc cgcgggtgcc ctggtcctcg cccggaagtg cttccgccac ctggcgctgg
      601 actacgtact ccagatcaac gttctccaag ccaagaagaa gtttgagatt ttggactcta
      661 tgctgtcctt catgcacgcc cagtacagct tcttccagca gggctacagc ctgctgcacc
      721 agctggaccc ctacatgaag aagctggcgg ctgagctgga ccagctggtg atcgactcgg
      781 cagtggaaaa gcgggaaatg gaacgcaagc atgccgccat ccagcagcgg gacttctcct
      841 acgatgagcc caaggtggag tttgacgtgg atgctcccag tggtgtggtg atggagggct
      901 acctcttcaa gagggccagc aacgccttca agacatggaa ccggcgctgg ttctccatcc
      961 agaacagcca gctggtctac cagaagaagc tcaaggacgt gctgaccgtg gtggtggacg
     1021 acctccggct ctgctccgtg aagccctgtg aggacgtcga gcgcaggttc tgctttgagg
     1081 tcgtgtcgcc caccaagagc tgcatgctgc aggccgactc ggagaagctg cggcaggcgt
     1141 gggttcaggc cgtgcaagcc agcatcgcgt ccgcctaccg ggagagtccc gacagctgct
     1201 accgcgagag gctggaccgc acggcgtccc cgtccgcaag cagcatcgac tctgccacgg
     1261 actctcggga acgcagcgcc aggggcgagc gcgtgctaca gcgcgtgcag cacgtggctg
     1321 ggaacagcca gtgtggcgac tgcgggcagc cggacccgcg ctgggccagc atcaacctgg
     1381 gcgtgctgct ctgcatcgag tgctcgggca tccacaggag cctgggcgtc cactgttcca
     1441 aggtgcggtc cctgaccctg gactcgtggg agccggagct gctgaagctg atgtgtgagc
     1501 tgggaaacag cactgtgaac cagatctacg aggcccagtg cgcagggccg ggcagcagga
     1561 agcccacggc cagcagcccc aggcaggaca aggaggcttg gatcaaggac aaatacgtgg
     1621 aaaagaagtt cgtgcggaag ccgccctcgg caccggccca ggaggcccca cggcgctggc
     1681 gggcgcagaa gtgcccacgc caccacagct ccccccgtgc ccacaccacc cgccgcagca
     1741 aaatccggat ggagcccgtc ccgccctctg tggctgctct gtgctcaggt tccacagagt
     1801 ccaggttccg cagggactcc ctcttctgcc cggatgagct ggactccctc ttctcctact
     1861 tcgacgcggg ggctgctgca gccggtccac gcagtctgag cagcgacagc ggcttagggg
     1921 gcagctccga cggcagctcg gatgtcctgg ccttcggcgt gggctccgtg gtggaccgcg
     1981 tcactgagga ggagggtgcc gagtcggagg agtccagcgg cgaggcagat ggagaggcgg
     2041 aggcctgggg cctggcggac gtgcgcgagc tgcaccccgg gctactggcg caccgcgcgg
     2101 cgcgcactag agacctcccc gcactggccg cagctctggc acaaggagcc gaggtcaact
     2161 gggctgacgc ggaggacgag ggcaagacgc cgctggtgca ggccgtgctg gggggttcct
     2221 tgatcatctg tgaattcctc ctgcaaaacg gagcggacgt gaaccaaaga gacagccggg
     2281 gtcgggcgcc cctgcaccat gccacgctcc tgggccgcac cggccaggtc tgcctgttct
     2341 tgaagcgggg ggcggaccag catgccttgg accacatgca gcaggaccca ctgagcatcg
     2401 cggtgcagga ggcgaatgca gacatcgtca cgcttctccg tctggcgcgc atggccgagg
     2461 agatgcgtga ggccgaggcg cctcctggcc agccggggcc cctggctggc agcagcccca
     2521 ccgagctcca gtaccgcagg tgcatccagg agttcatcag cctccacctg gatgagagct
     2581 agggtggcag ggccttggcg ggacccccac cggcccattt cctgagagcc ccggagctcc
     2641 tggagccctg ctgcctgctc tgcccccctc ggagctgccc tgacccccac ggcccggagc
     2701 aggaccccag cactgagtct tctgaagctc cgtgtctccc ctgggaggtg ctgcatcgcc
     2761 ccacccaggg accccgtgtc ttcgggtgac ccctccctag gggcctgggt aggctcgcgt
     2821 cacaaaccac tctcgaggcc ccacatcacc tcgtgcccct ctctgctccc ccaggcccgt
     2881 gtcacctcat gccctctatc cctggggccc atgccgcttg gtggcccacc ctgccctcag
     2941 ggcctgtgtc accttgtgcc cccactttac tgcccaagaa cactgacctg ctagtagggg
     3001 ccctcccaca tccccagaac ccctccacta ggccctgggg ctggtggctg gccaccggca
     3061 cgtggcgagg gcaggagggg ccgcccatcc agggaatcaa cccgcgtacc tcacttagtg
     3121 accccagcat ccaggctggg cttcttgggt gcttgggggg ctctggcctg gggccttagc
     3181 cctggctggg tgcggatgtc ccgaggccgt gtggctggcc atgcaggccc tcgggccccg
     3241 tagccccacc catccccccc ccttttccca cagcgggtgg caggggtgtg gctcttccca
     3301 cccctgcatc cggcatcctt tgtcacggac tgaggggttt tctacaatga tctccttctc
     3361 actttgtttc acgtcttttc tctggactca aggaccactt tgacccccag ctctgcctgc
     3421 tgctagggga ggcgcctgca gctcagccct gccccctcgc cagccttccc ctccccccca
     3481 cctccggcta gacccatggg gccttggctc actacccagg gccctctgat gccttctgca
     3541 ttccccttcc cagagccctg gggcaccggc tgggcctctc cccaactcag gccctcggcc
     3601 aggccaaggc cagttggttg ctcactatgc aaagactgcc cagggaggcc ccgtgggcag
     3661 caaggtgggt gcggactggg ctcccagctc cctctcctgc tggctgtgac ccctagagag
     3721 cagaatcaat gccttcctct ctccctgctt gagctctgcc cccgcctccc gccccactgc
     3781 ctgcatcagg gcctttgctg cggcctcggc tggctggcgg gacccgcctc cgttgcagat
     3841 cacagttaa
//
LOCUS       XR_004346432            2634 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ArfGAP with coiled-coil, ankyrin repeat
            and PH domains 3 (ACAP3), transcript variant X8, misc_RNA.
ACCESSION   XR_004346432
VERSION     XR_004346432.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2634
                     /gene="ACAP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742312"
     misc_RNA        1..2634
                     /gene="ACAP3"
                     /product="ArfGAP with coiled-coil, ankyrin repeat and PH
                     domains 3, transcript variant X8"
                     /db_xref="GeneID:116742312"
ORIGIN      
        1 gcgcggcgcg gcgcaggcgg gcgggccggc aggggatgct gctcggggcg ccgcggtcct
       61 cgtgccagtg agcgcctcgc gccgccgcag ccatgacggt ggagttcgag gagtgcatca
      121 aggactcgcc gcgcttcagg gcaactatcg acgaggtgga aacggacgtg gttgagatcg
      181 aggccaaact ggacaagctg gtgaagctgt gcagcggcgt gatcgaggct ggcaaggcct
      241 acgtcaccac caataggctc ttcgtgagtg gcgtccgaga cctgtcccag cagtgccagg
      301 gcgacaccgt catctcggaa tgtctgcaga ggttcggaga cagcctgcag gagatggtca
      361 cctaccacat gatcctgttt gaccaggccc agaggtctgt gcggcagcag ctccacaact
      421 tcgtcaaaga agacgtgcgc aagttcaagg agactaagaa gcagttcgac agggtccggg
      481 aggacatgga gctgtccctg gcgaggaacg cgcaggcccc aaggcaccgg ccgcatgagg
      541 cggaggaggc cgcgggtgcc ctggtcctcg cccggaagtg cttccgccac ctggcgctgg
      601 actacgtact ccagatcaac gttctccaag ccaagaagaa gtttgagatt ttggactcta
      661 tgctgtcctt catgcacgcc cagtacagct tcttccagca gggctacagc ctgctgcacc
      721 agctggaccc ctacatgaag aagctggcgg ctgagctgga ccagctggtg atcgactcgg
      781 cagtggaaaa gcgggaaatg gaacgcaagc atgccgccat ccagcagcgg gtgaggccct
      841 gcagccctgg ccgcgccccc gaggggcccc gggtccactg cccctcaccc cgctccacgc
      901 gaggaggacc tggggggccc agcgcacaga cacgcgcccc gtccctcccc aggctgactc
      961 tgatctttga actgcagtca gaggcggggg tccccaccct cagggtctca gcacagtgga
     1021 acggtcactt agacgccagc gccagccccc tcaggccaca gacgctgggg ctgcagctgg
     1081 gacggggatc ctactgcggc cacagctggc cgggcacggc cgggggcaga gacgggctgc
     1141 ggggcgggag ctggcgtccc cagccggcag ggagggggcg gggcttcgct cactggctct
     1201 ccccctcctc ccacctctcc tgctctcgcc ctcagacgct gctgcaggtg agtgggcgcc
     1261 caccccgggg ggaggggccc ccggtgggca gggcctctgc ccttcccgcc ccgcggcgtt
     1321 tcagcaccaa ggacacctcc acggccccgg cgcagctcag gacgcgcggc ccgctccagc
     1381 ggaggtggct gagctgggac cgcgtcccct tcgtcccctt cgtccccttc gtccccttcg
     1441 ggagcagctg cagctgtccc ttcccgcccc cactcagcca ggggagcagg tggctgggcc
     1501 tcctctccca ctgccggacg cccaggacaa cgctcagtgt ctccccagcc cgcgtgaatg
     1561 gagctctgtc aggctggtcg gggcagccca gctggcgacg tgaacggggg acagcttcct
     1621 tcctgatccc agagcctgct gctctgccag gctggggggt gggggctgga gctctccggg
     1681 cccccagctg tgacgggagg catctgcccc cacggggttt tgggtcagga agcgactgtg
     1741 aagatgcccc tcccacctcg cctctggggc agcccgagag ggcggcagtg tccccgcagc
     1801 cgcgggtggg tgctcactgg gggctgggct ccgaccaccc ccaggacttc tcctacgatg
     1861 agcccaaggt ggagtttgac gtggatgctc ccagtggtgt ggtgatggag ggctacctct
     1921 tcaagagggc cagcaacgcc ttcaagacat ggaaccggcg ctggttctcc atccagaaca
     1981 gccagctggt ctaccagaag aagctcaagg acgtgctgac cgtggtggtg gacgacctcc
     2041 ggctctgctc cgtgaagccc tgtgaggacg tcgagcgcag gttctgcttt gaggagctgc
     2101 atgctgcagg ccgactcgga gaagctgcgg caggcgtggg ttcaggccgt gcaagccagc
     2161 atcgcgtccg cctaccggga gagtcccgac agctgctacc gcgagaggct ggaccgcacg
     2221 gcgtccccgt ccgcaagcag catcgactct gccacggact ctcgggaacg cagcgccagg
     2281 ggcgagcgcg tgctacagcg cgtgcagcac gtggctggga acagccagtg tggcgactgc
     2341 gggcagccgg acccgcgctg ggccagcatc aacctgggcg tgctgctctg catcgagtgc
     2401 tcgggcatcc acaggagcct gggcgtccac tgttccaagg tgcggtccct gaccctggac
     2461 tcgtgggagc cggagctgct gaagctgatg tgtgagctgg gaaacagcac tgtgaaccag
     2521 atctacgagg cccagtgcgc agggccgggc agcaggaagc ccacggccag cagccccagg
     2581 caggacaagg aggcttggat caaggacaaa tacgtggaaa agaagttcgt gcgg
//
LOCUS       XM_032609793            2224 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pseudouridine synthase like 1 (PUSL1),
            mRNA.
ACCESSION   XM_032609793
VERSION     XM_032609793.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-721               VOSU01000011.1     460848-461568
            722-825             VOSU01000011.1     461571-461674
            826-883             VOSU01000011.1     461929-461986
            884-1071            VOSU01000011.1     462096-462283
            1072-1221           VOSU01000011.1     462442-462591
            1222-1395           VOSU01000011.1     462680-462853
            1396-1450           VOSU01000011.1     463624-463678
            1451-2224           VOSU01000011.1     463758-464531
FEATURES             Location/Qualifiers
     source          1..2224
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2224
                     /gene="PUSL1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 3 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:116742330"
     CDS             17..2182
                     /gene="PUSL1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: tRNA pseudouridine
                     synthase-like 1"
                     /protein_id="XP_032465684.1"
                     /db_xref="GeneID:116742330"
                     /translation="MHSSNSTVMAAAARGAHWHEDRGAPSSIPCRPARLRRAAPRRAR
                     RPPAPERGRRATAPPRLSLLGSVAKVRRPRAPPAVTAGERRQTPRRPAPFVRAGGRKC
                     GWAQQQPREPSGPARSSDPAVRQPGELATSARPDCGGRMGLGASVWPAERESLRGAVS
                     PGSALCTRSLSLAPPPPPPWAANRGCQPRLPGRGESPGAGAGLARGRDQAGFAGARGR
                     SPTCRPSTPAAPRGPVPWPSACPNAGSGLAMGAGSVRARYLVYFQYLGTDFNGVAAVR
                     GAQHAIGVQNYLEEAAERLNSVVPVKFTISSRTDAGVHALSNAAHLDVQRRSGRPPFS
                     PEVLTQALNTHLRHPAIRVLQAFRVPSHFHARHAATSRTYLYRLATGCHRPDQLPVFE
                     RNRCWALRADCLDVAAMREAAQHLLGTHDFRAFQSAGSPATSPVRTLRRASVSPDPAS
                     SPFVLPEESRRLRFWSLEFESQSFLYRQVRRMTSVLVAVGLGALMPAQVKMILESQDP
                     LGRHQSRVAPAHGLFLKAVLYEGFGKRRHGAVPACTPLTDGPLPRLSPCRGRGSQWQC
                     CPSSWDSSLWPRGKPEPSSPSPSLALWGGRLRERSRRQQRVERGLNSGAKAGGSAVLL
                     KALAWPLQRLSRSQDDLGSVHRSCLYVPSESTAQRSQVTPDTQQGQGSRSTLGPAAGR
                     CPALYTTVHHTGTTAGPTPVSLDLPQVPACPGWAARNGV"
     misc_feature    <179..>787
                     /gene="PUSL1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK07003"
                     /db_xref="CDD:235906"
     misc_feature    800..1603
                     /gene="PUSL1"
                     /note="Eukaryotic and bacterial pseudouridine synthases
                     similar to E. coli TruA; Region: PseudoU_synth_EcTruA;
                     cd02570"
                     /db_xref="CDD:211337"
     misc_feature    order(803..805,1043..1045,1052..1063,1067..1078)
                     /gene="PUSL1"
                     /note="dimerization interface 3.5A [polypeptide binding];
                     other site"
                     /db_xref="CDD:211337"
     misc_feature    order(935..946,1454..1456)
                     /gene="PUSL1"
                     /note="active site"
                     /db_xref="CDD:211337"
ORIGIN      
        1 gcgcggcgag tccttgatgc actcctcgaa ctccaccgtc atggctgcgg cggcgcgagg
       61 cgctcactgg cacgaggacc gcggcgcccc gagcagcatc ccctgccggc ccgcccgcct
      121 gcgccgcgcc gcgccgcgcc gcgctcggcg cccgcccgcc ccggaacgag gccgccgcgc
      181 caccgccccg ccccgcctgt cactgctggg gagcgtcgcc aaagtccgcc gcccgcgcgc
      241 gccgcccgct gtcaccgccg gggagcgtcg ccaaacgccc cgacgtcccg cccccttcgt
      301 ccgggcaggc ggtcggaagt gtgggtgggc ccagcaacag ccgcgggagc cgtcgggtcc
      361 cgcgcgttcc agcgatccgg ccgttaggca acccggggaa ttggcaacaa gcgctcggcc
      421 ggactgcggc gggaggatgg ggttgggggc cagcgtgtgg ccggcggaac gtgagagtct
      481 gcgtggggct gtctcccctg ggtcggcact ttgcacccgc tccctaagtc tggccccgcc
      541 tccgcccccg ccctgggcgg ccaaccgagg ctgccaaccg aggctgcctg ggcggggcga
      601 aagcccaggc gcaggcgcgg gattggcccg ggggcgtgac caggctgggt tcgcgggcgc
      661 gcgcgggcgc agccccacgt gccgtcccag tacgcctgcc gctccgcggg gtccggttcc
      721 gtggccctcc gcctgcccca atgccgggtc cggcctggcc atgggcgcgg gctcagtgcg
      781 ggcgcgctac ctcgtgtact tccagtactt gggcacggac tttaacgggg tcgcggcagt
      841 caggggcgcc cagcacgcca tcggagtcca gaactacctg gaggaggccg cagagcggct
      901 gaactcggtg gtgccggtaa agttcactat ctccagccgc acggatgctg gggtccatgc
      961 cctgagcaac gcggcgcacc tggacgtcca gcgccgctca ggccggcccc ccttctcccc
     1021 tgaagtcctg acgcaagccc tcaacaccca cctgaggcac ccggccatcc gggtactgca
     1081 ggccttccgt gtgcccagcc acttccatgc ccgccacgca gccacgtcca ggacctacct
     1141 gtaccgtctg gctaccggct gccacaggcc tgaccagctg cccgtgtttg aacgaaaccg
     1201 gtgctgggcg cttcgggctg actgcttgga cgtcgctgcc atgcgggagg ccgcccagca
     1261 cctcctgggg acacatgatt tcagggcctt ccagtcggct ggcagcccgg ccaccagccc
     1321 ggtgcgcacc ctgcgccgag cctccgtgtc ccccgaccct gccagcagcc cctttgtcct
     1381 ccccgaggag agcaggcggt tgcggttctg gagcctggag tttgagagcc agtccttcct
     1441 atacagacag gtgcggagaa tgacatctgt gctggtggcc gtggggctgg gggctttgat
     1501 gcctgctcag gtgaagatga ttctggagag ccaggacccc ctgggcaggc accagagccg
     1561 tgtggctccc gcccacggct tgttcctcaa ggcggtgctc tacgagggct tcggtaagag
     1621 gcggcatgga gcggtccctg cttgtacccc gttgactgac ggacccctcc caaggctgag
     1681 tccttgccgt gggaggggct ctcagtggca atgctgtccc agcagctggg actccagcct
     1741 gtggccaaga ggaaagccag agcccagcag cccaagcccc agcctggccc tgtggggagg
     1801 gaggctgaga gagcgttcta gaaggcagca gagggtagag aggggcttga actctggggc
     1861 gaaggcaggg ggctctgcag tcctgctgaa ggctctggcc tggcccctgc agagactgtc
     1921 acgctcccag gatgacctgg ggtctgttca caggtcctgc ctctatgtgc cctcagagtc
     1981 cacagcacag aggtcacagg tgacccctga cacgcagcaa ggtcagggca gccgtagcac
     2041 actaggccca gctgctggac gctgcccagc tctgtacacc accgtgcatc acacagggac
     2101 cacggcaggc cccacgcctg tcagcctgga cctgccacaa gtccccgcct gccccgggtg
     2161 ggctgccaga aatggggtgt aggagacagg cgcaagcacc agaaaacgag acacccaaac
     2221 agcc
//
LOCUS       XM_032609808            3203 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dishevelled segment polarity protein 1
            (DVL1), mRNA.
ACCESSION   XM_032609808
VERSION     XM_032609808.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-287               VOSU01000011.1     498841-499127       c
            288-357             VOSU01000011.1     493423-493492       c
            358-479             VOSU01000011.1     493173-493294       c
            480-583             VOSU01000011.1     492783-492886       c
            584-722             VOSU01000011.1     492402-492540       c
            723-816             VOSU01000011.1     492057-492150       c
            817-886             VOSU01000011.1     491907-491976       c
            887-1026            VOSU01000011.1     491685-491824       c
            1027-1103           VOSU01000011.1     491533-491609       c
            1104-1171           VOSU01000011.1     491381-491448       c
            1172-1324           VOSU01000011.1     491084-491236       c
            1325-1350           VOSU01000011.1     490452-490477       c
            1351-1454           VOSU01000011.1     490347-490450       c
            1455-1506           VOSU01000011.1     490219-490270       c
            1507-1530           VOSU01000011.1     490194-490217       c
            1531-1563           VOSU01000011.1     490160-490192       c
            1564-1624           VOSU01000011.1     490097-490157       c
            1625-1831           VOSU01000011.1     489776-489982       c
            1832-3203           VOSU01000011.1     487128-488499       c
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3203
                     /gene="DVL1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 5 bases in 4 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 long SRA reads, 9 Proteins, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742332"
     CDS             118..2223
                     /gene="DVL1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 5 bases in 4 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1567..1569,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: segment polarity protein
                     dishevelled homolog DVL-1"
                     /protein_id="XP_032465699.1"
                     /db_xref="GeneID:116742332"
                     /translation="MAETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHA
                     YKFFFKSMDQDFGVVKEEISDDNARLPCFNGRVVSWLVLAEGTHSDAGSQGTDGHAEL
                     PPPLERTGGIGDSRPPSFHPNVAGSRDGMDNETGTESLVSHRRERARRRNREEAARTN
                     GHPRGDRRRDLGLPPDSTSTVLSSELESSSFIDSEEDDNTSRLSSSTEQSTSSRLIRK
                     HKRRRRKQRLRQTDRASSFSSITDSTMSLNIITVTLNMERHHFLGISIVGQSNDRGDG
                     GIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPISLT
                     VAKCWDPTPRSYFTIPRADPVRPIDPAAWLSHTAALTGALPRYGTSPCSSAVTRTSTS
                     SLTSSVPGAPQLEEVPLTVKSDMGAVVRVMQLPDSGLEIRDRMWLKITIANAVIGADV
                     VDWLYTHLEGFRERRDARRYASSMLKRGFLRHRXTRFTFSEQCYYVFGDLCSNFAALN
                     LNSGSSGASDQDTLAPLPHPAAPWPLGQGYPYQYPGPPPCFPPAYQDPGFGYGSGSAG
                     SQQSEGSKSSGSTRSAGGSSRRALGREKESRSAGAGGSGSESDHTVPSGAVGSGGWRE
                     RPAGQLSRGSSPRSQASDAAPGLPPLHPLTKAYSVVGGPPGGPPVRELAAVPPELTGS
                     RQSFQKAMGNPCEFFVDIM"
     misc_feature    118..372
                     /gene="DVL1"
                     /note="Domain present in Dishevelled and axin; Region:
                     DAX; smart00021"
                     /db_xref="CDD:197474"
     misc_feature    385..858
                     /gene="DVL1"
                     /note="Dishevelled specific domain; Region: Dishevelled;
                     pfam02377"
                     /db_xref="CDD:460544"
     misc_feature    868..1128
                     /gene="DVL1"
                     /note="PDZ domain of segment polarity protein dishevelled
                     homolog DVL1, DVL2, DVL3, and related domains; Region:
                     PDZ_Dishevelled-like; cd06717"
                     /db_xref="CDD:467201"
     misc_feature    order(898..918,958..960,967..969,1057..1059,1069..1071,
                     1078..1083)
                     /gene="DVL1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467201"
     misc_feature    1366..1614
                     /gene="DVL1"
                     /note="DEP (Dishevelled, Egl-10, and Pleckstrin) domain
                     found in dishevelled-like proteins. Dishevelled-like
                     proteins play a key role in the transduction of the Wnt
                     signal from the cell surface to the nucleus, which in turn
                     is an important regulatory pathway...; Region:
                     DEP_dishevelled; cd04438"
                     /db_xref="CDD:239885"
     misc_feature    1624..2190
                     /gene="DVL1"
                     /note="Segment polarity protein dishevelled (Dsh) C
                     terminal; Region: Dsh_C; pfam12316"
                     /db_xref="CDD:463531"
ORIGIN      
        1 ggcgggggcg cgggggcctg gtcgcggctg ggccgggagc ggcgcgcggg cggggcgcgg
       61 gccggcggcg gggaggcgcc cgcgtccaag gcccgggccg ggccttagcg ccgcgccatg
      121 gcggagacca agatcatcta tcacatggac gaggaggaga cgccgtacct ggtcaagctg
      181 cccgtggcgc ccgagcgcgt cacgctggcc gacttcaaga acgtgctcag caaccggccc
      241 gtgcacgcct acaaattctt tttcaagtcc atggaccagg acttcggggt tgtgaaggag
      301 gagatctccg acgacaatgc taggctgccc tgcttcaatg gccgcgtggt ctcctggctg
      361 gtcctggctg agggcacaca ctcggatgca gggtctcagg gcactgacgg ccacgcagaa
      421 ctgcctccgc ctctcgagcg gacaggtggc atcggggact cccggccccc ctccttccac
      481 ccgaacgtgg ccggcagccg agatgggatg gacaacgaga ccggcacgga gtccctggtc
      541 agccaccggc gggagcgagc ccgacgtcgg aaccgcgagg aggccgcccg gaccaacggg
      601 cacccgaggg gggaccggcg gcgggacctg gggctgcccc ccgacagcac gtccaccgtg
      661 ctgagcagtg aacttgagtc cagcagcttc atcgactcgg aggaggacga caacaccagc
      721 cggctgagca gctccacgga gcagagcacc tcctcccggc tcatccggaa gcacaagcgc
      781 cggcggcgga agcagcgcct gcggcagaca gaccgggcct cctccttcag cagcatcacg
      841 gactccacca tgtccctgaa tatcatcacc gtcacgctca acatggagag gcaccacttc
      901 ctgggcatca gcatcgtggg ccagagcaac gaccggggcg acggcggcat ctacatcggc
      961 tccatcatga agggcggcgc cgtggctgcc gacggccgca tcgagccggg tgacatgctg
     1021 ctgcaggtga acgacgtcaa ctttgagaac atgagcaacg acgacgcggt gcgggtcctg
     1081 cgggagatcg tgtcccagac ggggcctatc agcctcactg tggccaagtg ctgggacccg
     1141 acgccccgga gctacttcac catcccgagg gctgaccccg ttcggcccat tgacccggcc
     1201 gcctggctgt cgcacacggc ggcgctgacc ggagccctgc cccgctacgg tacgagcccc
     1261 tgctccagcg ccgtcacgcg caccagcacc tcctcactaa ccagctcggt gcccggcgct
     1321 ccgcagctgg aggaggtgcc gctgacggtt aagagtgaca tgggcgctgt cgtccgggtc
     1381 atgcagctgc cggactcagg cctggagatc cgtgaccgca tgtggctcaa gatcaccatc
     1441 gccaacgccg tcataggggc ggacgtggtg gactggctgt acacgcacct ggagggcttc
     1501 cgtgaacggc gggatgcgcg caggtacgcc agcagcatgc tgaagcgcgg cttcctgcgg
     1561 caccggtgaa caagattcac cttctccgag cagtgctact acgtcttcgg ggacctgtgc
     1621 agcaacttcg ctgccctgaa cctcaacagc ggctccagcg gggcctcgga tcaggacacg
     1681 ctggccccgc tgccccaccc ggccgccccc tggcccctgg ggcagggcta cccctaccag
     1741 tacccggggc ccccgccctg cttcccgccc gcataccagg accccggctt cggctacggc
     1801 agcggcagtg ctggcagtca gcagagtgaa ggaagcaaaa gcagtgggtc cacccggagc
     1861 gctggcggga gcagccgtcg ggccctgggg cgcgagaagg agagccggtc ggctggagct
     1921 gggggcagtg gcagcgagtc ggaccacaca gtgccaagcg gggctgtggg cagcggcggc
     1981 tggcgggagc gtcctgctgg ccagctcagc cgtggcagca gcccgcgcag ccaggcctcg
     2041 gacgccgccc cagggctccc cccgctgcac cccctgacaa aggcgtactc ggtggtgggc
     2101 gggccgcctg gggggccgcc tgtccgggag ctggccgctg tccccccgga gctgacaggc
     2161 agccgccagt ccttccagaa ggccatgggg aacccctgtg agttctttgt cgatatcatg
     2221 tgaccaagga gagagtgctt ccggcctggc cactgcttcc agccagtggt cctgctgccc
     2281 ctgcaggagg ggctgcacct ggagcttttg tggccttcgt ggccttcctg ggccagacca
     2341 gcctgtgctt catgccatgg ggtctggcct ggccagagtg gcagcaggct ggaggagagg
     2401 ggctgagggc agcccaggcc actgtaacct ggatggcagc ccggtcctcc tggccagagc
     2461 agctgtgtcc tgtgcagacc ctggtggggg ggggcctcca tctccctgtg ctcaggcagg
     2521 tctgacctgc cccccttggc gtgtgcctca gggacccgca ctcgcccaca gtgctgtgca
     2581 tggggcctca ggttgagccg agaggtggcc gctaggcctg ggcccccctc ttcacccggt
     2641 tcacaggccc cacctcccat cctgcccagg ccggggtggg gagccctctc gggggtaggg
     2701 tcctagcccc gaggcctctc tctggctgcc cagggtaggg atctaattta tttatttatt
     2761 gcctggcctg tgtgttccac ggggtggggg ccaagtcagc tgtcccccac tcccagccac
     2821 tggagcagag tttcttgtgt tcacccccac cccgcaggga cacacggcgt gtctgaaggt
     2881 gtgcgggagg acggtgaggg ggagatggca ggagagggaa ggtgaccctg agggcaaggg
     2941 ccacatgcac acagctgctg ccggggcggg gtctggggca gagggcgtgg ccagctcgcc
     3001 cctccccgcg ggtcctgggg tggccggccg cccacgcacg cacgcacgca cgcacgctgc
     3061 tccctccgtc ccagcgtcgc tggcctgcac acgtctgcac tgtagatagt gttgcagagc
     3121 tggagcgtcg tccaggtagt ttaatagagc tgcttctgtg taaatgctat tttaaacact
     3181 aaaaagcatt taattttatg gga
//
LOCUS       XM_032609819            2244 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 11 (INTS11),
            transcript variant X1, mRNA.
ACCESSION   XM_032609819
VERSION     XM_032609819.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2244
                     /gene="INTS11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116742336"
     CDS             124..1992
                     /gene="INTS11"
                     /codon_start=1
                     /product="integrator complex subunit 11 isoform X1"
                     /protein_id="XP_032465710.1"
                     /db_xref="GeneID:116742336"
                     /translation="MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRR
                     FPDFSYITRSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPI
                     LLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLG
                     AAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRE
                     RDFLKKVHETVERGGKLWARWPGGAARGSSRAGLPPPLQVLIPVFALGRAQELCILLE
                     TFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA
                     FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRK
                     LEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAKKMEFLKQKI
                     EQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPDAKKPRLLHGTLIM
                     KDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETAVRVYSHLKSVLKDHCV
                     QHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQDEELGSYLTSLLKKGLPQAS"
     misc_feature    133..1530
                     /gene="INTS11"
                     /note="Predicted metal-dependent RNase, contains
                     metallo-beta-lactamase and KH domains [General function
                     prediction only]; Region: COG1782"
                     /db_xref="CDD:441388"
     misc_feature    139..735
                     /gene="INTS11"
                     /note="Integrator complex subunit 11, and related
                     proteins; MBL-fold metallo-hydrolase domain; Region:
                     INTS11-like_MBL-fold; cd16291"
                     /db_xref="CDD:293849"
     misc_feature    order(166..168,325..327,331..333,337..342,592..594,
                     655..657)
                     /gene="INTS11"
                     /note="active site"
                     /db_xref="CDD:293849"
     misc_feature    order(544..552,568..570,616..618,622..624,637..639,
                     706..708)
                     /gene="INTS11"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:293849"
ORIGIN      
        1 tggggttgcg cttgcgcagt gcgtcgccgc gagtcggacg cgcgtggcgg gctccgggac
       61 gcaggcgccc gggtttcgtg aggcagtagt ggtcccgccg gctcgctgag cgcgcccgac
      121 aggatgcccg agatcagggt cacgcccctg ggggctggcc aggacgtggg ccgaagctgc
      181 atcctggtct ccattgcggg caagaacgtc atgctggact gcgggatgca catgggcttc
      241 agcgacgata ggcgcttccc cgacttttct tacatcaccc gcagcggccg gctgactgac
      301 ttcctggact gcgtgatcat cagccacttc cacctggacc actgcggggc gctcccctac
      361 ttcagcgaga tggtgggcta tgacgggccc atctacatga cccagcccac ccaggcgatc
      421 tgccccatcc tgctggagga ctaccgcaag attgccgtgg acaagaaggg tgaggccaac
      481 ttcttcacgt cccagatgat caaggactgt atgaagaagg tggtggccgt ccacctccac
      541 cagacggtgc aggtggacga tgagctggaa atcaaggctt actatgcggg ccacgtgctg
      601 ggggcggcca tgttccagat taaagtgggc tcagagtctg tggtctacac gggggattat
      661 aacatgaccc cagaccggca tttgggagct gcctggattg acaaatgccg ccccaacctc
      721 ctgatcacag aatccacgta cgccaccacc atccgagact cgaagcgctg ccgggagcga
      781 gacttcctaa agaaggtcca tgagaccgtg gagcgtggcg ggaagctgtg ggctcggtgg
      841 ccaggtggcg cggccagggg ttcctcccga gctggcctcc caccccccct gcaggtgctg
      901 atccctgtgt ttgcgctggg ccgcgctcag gagctctgca tcctgcttga gaccttctgg
      961 gagcgcatgg acctgaaggc ccccatctac ttctccacgg gcctgacgga gaaggccaac
     1021 cactactaca agctcttcat cccctggacc aaccagaaga tccggaagac ctttgtgcag
     1081 aggaacatgt ttgagttcaa gcacatcaag gccttcgatc gggcatttgc cgacagcccg
     1141 ggtcccatgg tcgtgtttgc cacaccaggg atgctgcatg ccggccagtc cctacagatc
     1201 ttcaggaagt gggcagggaa cgagaagaac atggtcatca tgcccggcta ctgcgtgcag
     1261 ggcaccgtgg gccacaagat cctcagcggg cagcgcaagc tggagatgga ggggcggcag
     1321 gtgctggagg tcaagatgca ggtggagtac atgtccttca gcgcccacgc ggacgccaag
     1381 ggcatcatgc agctggtggg tcaggcggag ccggagaacg tgctcttggt gcacggcgag
     1441 gccaagaaga tggagtttct gaagcagaag attgagcagg aattccgggt cagctgctac
     1501 atgccggcca acggcgagac ggtgacgctg cccacgagcc ccagcatccc cgtgggcatc
     1561 tcactggggc tgctgaagcg ggagatggca caggggctgc tccctgacgc caagaagccc
     1621 cggctcttgc atggcaccct gatcatgaag gacagtaact tccggctcgt gtcctcagag
     1681 caggccctca aggagctggg cctggccgag caccagctgc gctttacctg ccgtgtgcac
     1741 ctgcacgaca cgcgcaaaga gcaggagaca gccgtgcgcg tgtacagcca cctgaagagc
     1801 gtcctcaagg accactgcgt gcaacacctt cctgacggct ccgtgaccgt ggagtccatc
     1861 ctcattcaag ccgctgccca ctcagaggac ccaggcacca aggtgctgct ggtctcctgg
     1921 acctaccagg acgaggagct gggaagctac ctcacgtctc tgctcaagaa gggcctgccc
     1981 caggccagct gaggccccgc tgccaggact gtgtgcaccc tgggtcttcc ctgtgtcctc
     2041 gggtatgggc ccacagctgg ctacgaccct catctgtgca gagaccacag tgccaccacg
     2101 cacctgcccg agtggctgct tttggctgaa gaaagaaacg gacctggggg gcttttcacc
     2161 ttttatttct gctcctgggc tgccaggaga tggggggggt gctcccgggg tgttgatttc
     2221 cagtaaaaac aaccacaggc tgtt
//
LOCUS       XM_032609827            2175 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 11 (INTS11),
            transcript variant X2, mRNA.
ACCESSION   XM_032609827
VERSION     XM_032609827.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2175
                     /gene="INTS11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 5 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742336"
     CDS             124..1923
                     /gene="INTS11"
                     /codon_start=1
                     /product="integrator complex subunit 11 isoform X2"
                     /protein_id="XP_032465718.1"
                     /db_xref="GeneID:116742336"
                     /translation="MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRR
                     FPDFSYITRSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPI
                     LLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLG
                     AAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRE
                     RDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKAN
                     HYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSL
                     QIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAH
                     ADAKGIMQLVGQAEPENVLLVHGEAKKMEFLKQKIEQEFRVSCYMPANGETVTLPTSP
                     SIPVGISLGLLKREMAQGLLPDAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQ
                     LRFTCRVHLHDTRKEQETAVRVYSHLKSVLKDHCVQHLPDGSVTVESILIQAAAHSED
                     PGTKVLLVSWTYQDEELGSYLTSLLKKGLPQAS"
     misc_feature    133..1461
                     /gene="INTS11"
                     /note="Predicted metal-dependent RNase, contains
                     metallo-beta-lactamase and KH domains [General function
                     prediction only]; Region: COG1782"
                     /db_xref="CDD:441388"
     misc_feature    139..735
                     /gene="INTS11"
                     /note="Integrator complex subunit 11, and related
                     proteins; MBL-fold metallo-hydrolase domain; Region:
                     INTS11-like_MBL-fold; cd16291"
                     /db_xref="CDD:293849"
     misc_feature    order(166..168,325..327,331..333,337..342,592..594,
                     655..657)
                     /gene="INTS11"
                     /note="active site"
                     /db_xref="CDD:293849"
     misc_feature    order(544..552,568..570,616..618,622..624,637..639,
                     706..708)
                     /gene="INTS11"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:293849"
ORIGIN      
        1 tggggttgcg cttgcgcagt gcgtcgccgc gagtcggacg cgcgtggcgg gctccgggac
       61 gcaggcgccc gggtttcgtg aggcagtagt ggtcccgccg gctcgctgag cgcgcccgac
      121 aggatgcccg agatcagggt cacgcccctg ggggctggcc aggacgtggg ccgaagctgc
      181 atcctggtct ccattgcggg caagaacgtc atgctggact gcgggatgca catgggcttc
      241 agcgacgata ggcgcttccc cgacttttct tacatcaccc gcagcggccg gctgactgac
      301 ttcctggact gcgtgatcat cagccacttc cacctggacc actgcggggc gctcccctac
      361 ttcagcgaga tggtgggcta tgacgggccc atctacatga cccagcccac ccaggcgatc
      421 tgccccatcc tgctggagga ctaccgcaag attgccgtgg acaagaaggg tgaggccaac
      481 ttcttcacgt cccagatgat caaggactgt atgaagaagg tggtggccgt ccacctccac
      541 cagacggtgc aggtggacga tgagctggaa atcaaggctt actatgcggg ccacgtgctg
      601 ggggcggcca tgttccagat taaagtgggc tcagagtctg tggtctacac gggggattat
      661 aacatgaccc cagaccggca tttgggagct gcctggattg acaaatgccg ccccaacctc
      721 ctgatcacag aatccacgta cgccaccacc atccgagact cgaagcgctg ccgggagcga
      781 gacttcctaa agaaggtcca tgagaccgtg gagcgtggcg ggaaggtgct gatccctgtg
      841 tttgcgctgg gccgcgctca ggagctctgc atcctgcttg agaccttctg ggagcgcatg
      901 gacctgaagg cccccatcta cttctccacg ggcctgacgg agaaggccaa ccactactac
      961 aagctcttca tcccctggac caaccagaag atccggaaga cctttgtgca gaggaacatg
     1021 tttgagttca agcacatcaa ggccttcgat cgggcatttg ccgacagccc gggtcccatg
     1081 gtcgtgtttg ccacaccagg gatgctgcat gccggccagt ccctacagat cttcaggaag
     1141 tgggcaggga acgagaagaa catggtcatc atgcccggct actgcgtgca gggcaccgtg
     1201 ggccacaaga tcctcagcgg gcagcgcaag ctggagatgg aggggcggca ggtgctggag
     1261 gtcaagatgc aggtggagta catgtccttc agcgcccacg cggacgccaa gggcatcatg
     1321 cagctggtgg gtcaggcgga gccggagaac gtgctcttgg tgcacggcga ggccaagaag
     1381 atggagtttc tgaagcagaa gattgagcag gaattccggg tcagctgcta catgccggcc
     1441 aacggcgaga cggtgacgct gcccacgagc cccagcatcc ccgtgggcat ctcactgggg
     1501 ctgctgaagc gggagatggc acaggggctg ctccctgacg ccaagaagcc ccggctcttg
     1561 catggcaccc tgatcatgaa ggacagtaac ttccggctcg tgtcctcaga gcaggccctc
     1621 aaggagctgg gcctggccga gcaccagctg cgctttacct gccgtgtgca cctgcacgac
     1681 acgcgcaaag agcaggagac agccgtgcgc gtgtacagcc acctgaagag cgtcctcaag
     1741 gaccactgcg tgcaacacct tcctgacggc tccgtgaccg tggagtccat cctcattcaa
     1801 gccgctgccc actcagagga cccaggcacc aaggtgctgc tggtctcctg gacctaccag
     1861 gacgaggagc tgggaagcta cctcacgtct ctgctcaaga agggcctgcc ccaggccagc
     1921 tgaggccccg ctgccaggac tgtgtgcacc ctgggtcttc cctgtgtcct cgggtatggg
     1981 cccacagctg gctacgaccc tcatctgtgc agagaccaca gtgccaccac gcacctgccc
     2041 gagtggctgc ttttggctga agaaagaaac ggacctgggg ggcttttcac cttttatttc
     2101 tgctcctggg ctgccaggag atgggggggg tgctcccggg gtgttgattt ccagtaaaaa
     2161 caaccacagg ctgtt
//
LOCUS       XM_032609835            2139 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 11 (INTS11),
            transcript variant X3, mRNA.
ACCESSION   XM_032609835
VERSION     XM_032609835.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2139
                     /gene="INTS11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116742336"
     CDS             124..1887
                     /gene="INTS11"
                     /codon_start=1
                     /product="integrator complex subunit 11 isoform X3"
                     /protein_id="XP_032465726.1"
                     /db_xref="GeneID:116742336"
                     /translation="MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRR
                     FPDFSYITRSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPI
                     LLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLG
                     AAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRE
                     RDFLKKVHETVERGGKELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQ
                     KIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKN
                     MVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQ
                     AEPENVLLVHGEAKKMEFLKQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLK
                     REMAQGLLPDAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDT
                     RKEQETAVRVYSHLKSVLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTY
                     QDEELGSYLTSLLKKGLPQAS"
     misc_feature    133..1425
                     /gene="INTS11"
                     /note="Predicted metal-dependent RNase, contains
                     metallo-beta-lactamase and KH domains [General function
                     prediction only]; Region: COG1782"
                     /db_xref="CDD:441388"
     misc_feature    139..735
                     /gene="INTS11"
                     /note="Integrator complex subunit 11, and related
                     proteins; MBL-fold metallo-hydrolase domain; Region:
                     INTS11-like_MBL-fold; cd16291"
                     /db_xref="CDD:293849"
     misc_feature    order(166..168,325..327,331..333,337..342,592..594,
                     655..657)
                     /gene="INTS11"
                     /note="active site"
                     /db_xref="CDD:293849"
     misc_feature    order(544..552,568..570,616..618,622..624,637..639,
                     706..708)
                     /gene="INTS11"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:293849"
ORIGIN      
        1 tggggttgcg cttgcgcagt gcgtcgccgc gagtcggacg cgcgtggcgg gctccgggac
       61 gcaggcgccc gggtttcgtg aggcagtagt ggtcccgccg gctcgctgag cgcgcccgac
      121 aggatgcccg agatcagggt cacgcccctg ggggctggcc aggacgtggg ccgaagctgc
      181 atcctggtct ccattgcggg caagaacgtc atgctggact gcgggatgca catgggcttc
      241 agcgacgata ggcgcttccc cgacttttct tacatcaccc gcagcggccg gctgactgac
      301 ttcctggact gcgtgatcat cagccacttc cacctggacc actgcggggc gctcccctac
      361 ttcagcgaga tggtgggcta tgacgggccc atctacatga cccagcccac ccaggcgatc
      421 tgccccatcc tgctggagga ctaccgcaag attgccgtgg acaagaaggg tgaggccaac
      481 ttcttcacgt cccagatgat caaggactgt atgaagaagg tggtggccgt ccacctccac
      541 cagacggtgc aggtggacga tgagctggaa atcaaggctt actatgcggg ccacgtgctg
      601 ggggcggcca tgttccagat taaagtgggc tcagagtctg tggtctacac gggggattat
      661 aacatgaccc cagaccggca tttgggagct gcctggattg acaaatgccg ccccaacctc
      721 ctgatcacag aatccacgta cgccaccacc atccgagact cgaagcgctg ccgggagcga
      781 gacttcctaa agaaggtcca tgagaccgtg gagcgtggcg ggaaggagct ctgcatcctg
      841 cttgagacct tctgggagcg catggacctg aaggccccca tctacttctc cacgggcctg
      901 acggagaagg ccaaccacta ctacaagctc ttcatcccct ggaccaacca gaagatccgg
      961 aagacctttg tgcagaggaa catgtttgag ttcaagcaca tcaaggcctt cgatcgggca
     1021 tttgccgaca gcccgggtcc catggtcgtg tttgccacac cagggatgct gcatgccggc
     1081 cagtccctac agatcttcag gaagtgggca gggaacgaga agaacatggt catcatgccc
     1141 ggctactgcg tgcagggcac cgtgggccac aagatcctca gcgggcagcg caagctggag
     1201 atggaggggc ggcaggtgct ggaggtcaag atgcaggtgg agtacatgtc cttcagcgcc
     1261 cacgcggacg ccaagggcat catgcagctg gtgggtcagg cggagccgga gaacgtgctc
     1321 ttggtgcacg gcgaggccaa gaagatggag tttctgaagc agaagattga gcaggaattc
     1381 cgggtcagct gctacatgcc ggccaacggc gagacggtga cgctgcccac gagccccagc
     1441 atccccgtgg gcatctcact ggggctgctg aagcgggaga tggcacaggg gctgctccct
     1501 gacgccaaga agccccggct cttgcatggc accctgatca tgaaggacag taacttccgg
     1561 ctcgtgtcct cagagcaggc cctcaaggag ctgggcctgg ccgagcacca gctgcgcttt
     1621 acctgccgtg tgcacctgca cgacacgcgc aaagagcagg agacagccgt gcgcgtgtac
     1681 agccacctga agagcgtcct caaggaccac tgcgtgcaac accttcctga cggctccgtg
     1741 accgtggagt ccatcctcat tcaagccgct gcccactcag aggacccagg caccaaggtg
     1801 ctgctggtct cctggaccta ccaggacgag gagctgggaa gctacctcac gtctctgctc
     1861 aagaagggcc tgccccaggc cagctgaggc cccgctgcca ggactgtgtg caccctgggt
     1921 cttccctgtg tcctcgggta tgggcccaca gctggctacg accctcatct gtgcagagac
     1981 cacagtgcca ccacgcacct gcccgagtgg ctgcttttgg ctgaagaaag aaacggacct
     2041 ggggggcttt tcacctttta tttctgctcc tgggctgcca ggagatgggg ggggtgctcc
     2101 cggggtgttg atttccagta aaaacaacca caggctgtt
//
LOCUS       XM_032609842            2109 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 11 (INTS11),
            transcript variant X4, mRNA.
ACCESSION   XM_032609842
VERSION     XM_032609842.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2109
                     /gene="INTS11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116742336"
     CDS             124..1857
                     /gene="INTS11"
                     /codon_start=1
                     /product="integrator complex subunit 11 isoform X4"
                     /protein_id="XP_032465733.1"
                     /db_xref="GeneID:116742336"
                     /translation="MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRR
                     FPDFSYITRSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPI
                     LLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLG
                     AAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRE
                     RDFLKKELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRN
                     MFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ
                     GTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVH
                     GEAKKMEFLKQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPD
                     AKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETAVRV
                     YSHLKSVLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQDEELGSYLT
                     SLLKKGLPQAS"
     misc_feature    133..1395
                     /gene="INTS11"
                     /note="Predicted metal-dependent RNase, contains
                     metallo-beta-lactamase and KH domains [General function
                     prediction only]; Region: COG1782"
                     /db_xref="CDD:441388"
     misc_feature    139..735
                     /gene="INTS11"
                     /note="Integrator complex subunit 11, and related
                     proteins; MBL-fold metallo-hydrolase domain; Region:
                     INTS11-like_MBL-fold; cd16291"
                     /db_xref="CDD:293849"
     misc_feature    order(166..168,325..327,331..333,337..342,592..594,
                     655..657)
                     /gene="INTS11"
                     /note="active site"
                     /db_xref="CDD:293849"
     misc_feature    order(544..552,568..570,616..618,622..624,637..639,
                     706..708)
                     /gene="INTS11"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:293849"
ORIGIN      
        1 tggggttgcg cttgcgcagt gcgtcgccgc gagtcggacg cgcgtggcgg gctccgggac
       61 gcaggcgccc gggtttcgtg aggcagtagt ggtcccgccg gctcgctgag cgcgcccgac
      121 aggatgcccg agatcagggt cacgcccctg ggggctggcc aggacgtggg ccgaagctgc
      181 atcctggtct ccattgcggg caagaacgtc atgctggact gcgggatgca catgggcttc
      241 agcgacgata ggcgcttccc cgacttttct tacatcaccc gcagcggccg gctgactgac
      301 ttcctggact gcgtgatcat cagccacttc cacctggacc actgcggggc gctcccctac
      361 ttcagcgaga tggtgggcta tgacgggccc atctacatga cccagcccac ccaggcgatc
      421 tgccccatcc tgctggagga ctaccgcaag attgccgtgg acaagaaggg tgaggccaac
      481 ttcttcacgt cccagatgat caaggactgt atgaagaagg tggtggccgt ccacctccac
      541 cagacggtgc aggtggacga tgagctggaa atcaaggctt actatgcggg ccacgtgctg
      601 ggggcggcca tgttccagat taaagtgggc tcagagtctg tggtctacac gggggattat
      661 aacatgaccc cagaccggca tttgggagct gcctggattg acaaatgccg ccccaacctc
      721 ctgatcacag aatccacgta cgccaccacc atccgagact cgaagcgctg ccgggagcga
      781 gacttcctaa agaaggagct ctgcatcctg cttgagacct tctgggagcg catggacctg
      841 aaggccccca tctacttctc cacgggcctg acggagaagg ccaaccacta ctacaagctc
      901 ttcatcccct ggaccaacca gaagatccgg aagacctttg tgcagaggaa catgtttgag
      961 ttcaagcaca tcaaggcctt cgatcgggca tttgccgaca gcccgggtcc catggtcgtg
     1021 tttgccacac cagggatgct gcatgccggc cagtccctac agatcttcag gaagtgggca
     1081 gggaacgaga agaacatggt catcatgccc ggctactgcg tgcagggcac cgtgggccac
     1141 aagatcctca gcgggcagcg caagctggag atggaggggc ggcaggtgct ggaggtcaag
     1201 atgcaggtgg agtacatgtc cttcagcgcc cacgcggacg ccaagggcat catgcagctg
     1261 gtgggtcagg cggagccgga gaacgtgctc ttggtgcacg gcgaggccaa gaagatggag
     1321 tttctgaagc agaagattga gcaggaattc cgggtcagct gctacatgcc ggccaacggc
     1381 gagacggtga cgctgcccac gagccccagc atccccgtgg gcatctcact ggggctgctg
     1441 aagcgggaga tggcacaggg gctgctccct gacgccaaga agccccggct cttgcatggc
     1501 accctgatca tgaaggacag taacttccgg ctcgtgtcct cagagcaggc cctcaaggag
     1561 ctgggcctgg ccgagcacca gctgcgcttt acctgccgtg tgcacctgca cgacacgcgc
     1621 aaagagcagg agacagccgt gcgcgtgtac agccacctga agagcgtcct caaggaccac
     1681 tgcgtgcaac accttcctga cggctccgtg accgtggagt ccatcctcat tcaagccgct
     1741 gcccactcag aggacccagg caccaaggtg ctgctggtct cctggaccta ccaggacgag
     1801 gagctgggaa gctacctcac gtctctgctc aagaagggcc tgccccaggc cagctgaggc
     1861 cccgctgcca ggactgtgtg caccctgggt cttccctgtg tcctcgggta tgggcccaca
     1921 gctggctacg accctcatct gtgcagagac cacagtgcca ccacgcacct gcccgagtgg
     1981 ctgcttttgg ctgaagaaag aaacggacct ggggggcttt tcacctttta tttctgctcc
     2041 tgggctgcca ggagatgggg ggggtgctcc cggggtgttg atttccagta aaaacaacca
     2101 caggctgtt
//
LOCUS       XM_032609852            3444 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ceramide-1-phosphate transfer protein
            (CPTP), transcript variant X1, mRNA.
ACCESSION   XM_032609852
VERSION     XM_032609852.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3444
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3444
                     /gene="CPTP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742357"
     CDS             1777..2421
                     /gene="CPTP"
                     /codon_start=1
                     /product="ceramide-1-phosphate transfer protein"
                     /protein_id="XP_032465743.1"
                     /db_xref="GeneID:116742357"
                     /translation="MDDLESEFNLKVVLLSFKQCLNEKEEVLLDHYLASWRGLVRFLN
                     SLGTIFSFISKDVVAKLQIMEQLCGGPQQEHYSTLQAMVAYEVGSQLVDLERRSRHPD
                     SGCRTVLRLHRALHWLQLFLEGVRTSPEDARTAALCTDSYNASLAAYHPWIIRRAVTV
                     AFCALPTRKVFLETMNVGSPEQAVEMLGEALPFIKRVYDISQRLYAEHALLDLP"
     misc_feature    1855..2295
                     /gene="CPTP"
                     /note="Glycolipid transfer protein (GLTP); Region: GLTP;
                     pfam08718"
                     /db_xref="CDD:462575"
ORIGIN      
        1 cggacgcggt gggatcgagc tggcgttcag gaaacccacc ccaaccgaac cgggcgtggg
       61 agggggcggc cgaggacccg actcccgcgc tggcccggac cccgggcccc tgagccatcc
      121 ctgggcctca gctggagcag gacccacccg agccccggat cccacctcgg cgcaacccgg
      181 agccccctta gcaggcgaga ctggggctgt ggtgctggag ggttgccccc tttttcctgg
      241 ggtccttcag cttgctgtca gccacagggc tgcggtgctc aggccggcct caggacgagc
      301 cctgaccttg ggaccgtgga ccgcccctgg gggagccttg gcggtgccct gcatcacctt
      361 cccagagctg gcaggctgcc cgcccccggc cgcgccgccc ctgcccttcc tgttttttcc
      421 aagctctgaa aggctgctgg cacctcctgt tggctgctgg ctcaggttct gcgcaggaag
      481 gccaggccca caggatgtct ggtgaccagg aaggtagccc tgagggcctc agaggccatc
      541 tgctcggtgg acagaagact gagggcctga gagaggggag gggtgttcta gaaacctccg
      601 gagtgttatc ttcctgagtc caggcccggc tgtcccccac acctgaagac agggtgagct
      661 cacctctggg cactccaccc agtgccaggc atgcggccaa gccgtggggc ctgcagggcc
      721 tcagcagcac ctactgggcc ccatcagatg ctcccagcag cctgggtggt gggcagggga
      781 gggtgtgcgg gcccgttttc cccaaagatg tgggacagga tcttagaaca gtgcacgatt
      841 tgcccgcaga gtggaaggca gaccccgccc aggcacacca gtgtgctctc ctggctgagc
      901 tctcaccaca cctcgggcga ccgggctccc acagtgctcc cagcgccaag agccaggaac
      961 ccccatgccc aaaggggtga gagcttgtcc tggacatgag gtgagacaca gctcagtccc
     1021 cagggcctgt cagagccaca ccgcagtgca ggccccaggc acccagggag gcaggggctg
     1081 aggtgcccag cgacacccac taacgcttgg gcacttgggt gtttgtggag tgactatatg
     1141 aatgccagaa tccagggcag gcctctggcc tggggcactt ctggactccc tggggctggg
     1201 ggagggcctg tggctgtctt cggagcatga gaaaacctgt gtgtgctcca gctgcccttc
     1261 tgtgtgcgac gggtacagtt acagtaggag tgagaagact ggtgtctgtc catctgtcga
     1321 caaatgctga ccccgcagcc tctgctctgt gtgttgcgat gtagcttcaa gcaaggaagg
     1381 gcgtggccct ccagcctcag cccacagtct gtctctccac tgcttatcct tttacctact
     1441 gtgttgagct tcctgtcttt gctattatca cacacacaca cctgccgcta ggatgttgcc
     1501 tcagcggggc caggctgtcg gtctcactca gtgcactgga atgggtgctt ggctctggat
     1561 ggggactcag caaatacttc tccagttagt aggaacagac acacactcaa gagagacaga
     1621 ctataaacca gcaaggaaat ctgagcagag acgcctcctg cgagtgagac gtggcagggg
     1681 tttgacaagc ttgagcgtcg gggggccgtg ctaagagccg cgccaggcct gtgtgtctgc
     1741 gagggtgtga cccgagcaga gcgagttcct gttgaaatgg atgacttgga gtcagagttt
     1801 aatctgaaag ttgtcctgct cagtttcaag cagtgtctca acgagaagga agaggtgctg
     1861 ctggaccact acctcgccag ctggaggggg ctggtcaggt tcctgaacag cctgggcacc
     1921 atcttctcgt tcatctccaa ggatgtggtg gcgaagctgc agatcatgga gcagctgtgc
     1981 ggtggccccc agcaggagca ctatagcacc ctgcaggcca tggtggccta cgaggtgggc
     2041 agccagctgg tagacctgga gaggcgctcc cgccaccccg actcgggctg ccggacggtg
     2101 ctgcggctgc accgcgccct gcactggctg cagctcttcc tggagggcgt ccgcaccagc
     2161 cctgaggacg cacgcactgc cgcgctctgc actgactctt acaatgcctc gctggccgcc
     2221 taccaccctt ggatcatccg ccgcgccgtt accgtggcct tctgtgcact gcccacacgc
     2281 aaggtcttcc tggagaccat gaacgtgggg tcccctgagc aggccgtgga gatgctgggc
     2341 gaggccctgc ccttcatcaa acgcgtctac gacatctccc agaggctcta cgccgagcac
     2401 gccctgctgg acctacccta ggggctggca ggcccaggtg gggtgggctt cccctaattc
     2461 agagctgggt gggggcagct gggacccatc agtcccaccg tggaactttc tgggtccccc
     2521 tgtgagctga gctcgtcggg agccattcac agcatccagc cgctgcagac aggcatcacg
     2581 aagaaggcag atgctggccg tctgctccac gcccggcctc tcctttgcct gggcatctca
     2641 tctttaccct cagctaagtt acactcatgt ccagtcaggc ctctcccggg tggatgaagt
     2701 gcaggaagca gtcagtgggg gtcaggatta gtgttcatgg aaaagctgcc cctgcctggg
     2761 ggtcaagtct gtgagctacg gggagtcgtg gggcgcagga cacagtgtct gcccagctgg
     2821 gctgccttgg gcccctctgt aacggctggc tgtccccagg acagggagag agtcctgggc
     2881 aggggtcagc actgcaggct ttccccccgc ccctcgcctc ctcagccagg ggcccacgtg
     2941 tcctcagcag cgacagcagg acctgaaacc ccgagggaag gactgccctg ctgccaccgc
     3001 cctgcacacg tgtcagccgc cacctgcggc ctagagtctg catagcacag cccgagaacc
     3061 cccaggatcc cgggactcct ctgggccagt gctggctcct ccctccccag catccagcga
     3121 gatgctgtgc tccctcttcc ctgcccctta ctgctccatc cccgtggagc tcaggagacc
     3181 caggatgaca tagcacaaag gagggggcct caaccgcttt gcctcagtga caggctggca
     3241 ggtggccaca cccctcccag ccatcaccca gtgcttgggg gcctggcccc acccactgcc
     3301 tcttcactgt gaggccagga cctcaggtgc caaggggaca ttattcaccg tgcagcaaat
     3361 gcacgtaagt gcaagcttgc aggtaccctt agaagctgta atacgggtga tggcttttcc
     3421 aaaataaaca aactgcactt agca
//
LOCUS       XM_032609863            3248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ceramide-1-phosphate transfer protein
            (CPTP), transcript variant X2, mRNA.
ACCESSION   XM_032609863
VERSION     XM_032609863.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3248
                     /gene="CPTP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742357"
     CDS             1581..2225
                     /gene="CPTP"
                     /codon_start=1
                     /product="ceramide-1-phosphate transfer protein"
                     /protein_id="XP_032465754.1"
                     /db_xref="GeneID:116742357"
                     /translation="MDDLESEFNLKVVLLSFKQCLNEKEEVLLDHYLASWRGLVRFLN
                     SLGTIFSFISKDVVAKLQIMEQLCGGPQQEHYSTLQAMVAYEVGSQLVDLERRSRHPD
                     SGCRTVLRLHRALHWLQLFLEGVRTSPEDARTAALCTDSYNASLAAYHPWIIRRAVTV
                     AFCALPTRKVFLETMNVGSPEQAVEMLGEALPFIKRVYDISQRLYAEHALLDLP"
     misc_feature    1659..2099
                     /gene="CPTP"
                     /note="Glycolipid transfer protein (GLTP); Region: GLTP;
                     pfam08718"
                     /db_xref="CDD:462575"
ORIGIN      
        1 cggacgcggt gggatcgagc tggcgttcag gaaacccacc ccaaccgaac cgggcgtggg
       61 agggggcggc cgaggacccg actcccgcgc tggcccggac cccgggcccc tgagccatcc
      121 ctgggcctca gctggagcag gacccacccg agccccggat cccacctcgg cgcaacccgg
      181 agccccctta gcaggcgaga ctggggctgt ggtgctggag ggttgccccc tttttcctgg
      241 ggtccttcag cttgctgtca gccacagggc tgcggtgctc aggccggcct caggacgagc
      301 cctgaccttg ggaccgtgga ccgcccctgg gggagccttg gcggtgccct gcatcacctt
      361 cccagagctg gcaggctgcc cgcccccggc cgcgccgccc ctgcccttcc tgttttttcc
      421 aagctctgaa aggctgctgg cacctcctgt tggctgctgg ctcaggttct gcgcaggaag
      481 gccaggccca caggatgtct ggtgaccagg aaggtagccc tgagggcctc agaggccatc
      541 tgctcggtgg acagaagact gagggcctga gagaggggag gggtgttcta gaaacctccg
      601 gagtgttatc ttcctgagtc caggcccggc tgtcccccac acctgaagac aggagtggaa
      661 ggcagacccc gcccaggcac accagtgtgc tctcctggct gagctctcac cacacctcgg
      721 gcgaccgggc tcccacagtg ctcccagcgc caagagccag gaacccccat gcccaaaggg
      781 gtgagagctt gtcctggaca tgaggtgaga cacagctcag tccccagggc ctgtcagagc
      841 cacaccgcag tgcaggcccc aggcacccag ggaggcaggg gctgaggtgc ccagcgacac
      901 ccactaacgc ttgggcactt gggtgtttgt ggagtgacta tatgaatgcc agaatccagg
      961 gcaggcctct ggcctggggc acttctggac tccctggggc tgggggaggg cctgtggctg
     1021 tcttcggagc atgagaaaac ctgtgtgtgc tccagctgcc cttctgtgtg cgacgggtac
     1081 agttacagta ggagtgagaa gactggtgtc tgtccatctg tcgacaaatg ctgaccccgc
     1141 agcctctgct ctgtgtgttg cgatgtagct tcaagcaagg aagggcgtgg ccctccagcc
     1201 tcagcccaca gtctgtctct ccactgctta tccttttacc tactgtgttg agcttcctgt
     1261 ctttgctatt atcacacaca cacacctgcc gctaggatgt tgcctcagcg gggccaggct
     1321 gtcggtctca ctcagtgcac tggaatgggt gcttggctct ggatggggac tcagcaaata
     1381 cttctccagt tagtaggaac agacacacac tcaagagaga cagactataa accagcaagg
     1441 aaatctgagc agagacgcct cctgcgagtg agacgtggca ggggtttgac aagcttgagc
     1501 gtcggggggc cgtgctaaga gccgcgccag gcctgtgtgt ctgcgagggt gtgacccgag
     1561 cagagcgagt tcctgttgaa atggatgact tggagtcaga gtttaatctg aaagttgtcc
     1621 tgctcagttt caagcagtgt ctcaacgaga aggaagaggt gctgctggac cactacctcg
     1681 ccagctggag ggggctggtc aggttcctga acagcctggg caccatcttc tcgttcatct
     1741 ccaaggatgt ggtggcgaag ctgcagatca tggagcagct gtgcggtggc ccccagcagg
     1801 agcactatag caccctgcag gccatggtgg cctacgaggt gggcagccag ctggtagacc
     1861 tggagaggcg ctcccgccac cccgactcgg gctgccggac ggtgctgcgg ctgcaccgcg
     1921 ccctgcactg gctgcagctc ttcctggagg gcgtccgcac cagccctgag gacgcacgca
     1981 ctgccgcgct ctgcactgac tcttacaatg cctcgctggc cgcctaccac ccttggatca
     2041 tccgccgcgc cgttaccgtg gccttctgtg cactgcccac acgcaaggtc ttcctggaga
     2101 ccatgaacgt ggggtcccct gagcaggccg tggagatgct gggcgaggcc ctgcccttca
     2161 tcaaacgcgt ctacgacatc tcccagaggc tctacgccga gcacgccctg ctggacctac
     2221 cctaggggct ggcaggccca ggtggggtgg gcttccccta attcagagct gggtgggggc
     2281 agctgggacc catcagtccc accgtggaac tttctgggtc cccctgtgag ctgagctcgt
     2341 cgggagccat tcacagcatc cagccgctgc agacaggcat cacgaagaag gcagatgctg
     2401 gccgtctgct ccacgcccgg cctctccttt gcctgggcat ctcatcttta ccctcagcta
     2461 agttacactc atgtccagtc aggcctctcc cgggtggatg aagtgcagga agcagtcagt
     2521 gggggtcagg attagtgttc atggaaaagc tgcccctgcc tgggggtcaa gtctgtgagc
     2581 tacggggagt cgtggggcgc aggacacagt gtctgcccag ctgggctgcc ttgggcccct
     2641 ctgtaacggc tggctgtccc caggacaggg agagagtcct gggcaggggt cagcactgca
     2701 ggctttcccc ccgcccctcg cctcctcagc caggggccca cgtgtcctca gcagcgacag
     2761 caggacctga aaccccgagg gaaggactgc cctgctgcca ccgccctgca cacgtgtcag
     2821 ccgccacctg cggcctagag tctgcatagc acagcccgag aacccccagg atcccgggac
     2881 tcctctgggc cagtgctggc tcctccctcc ccagcatcca gcgagatgct gtgctccctc
     2941 ttccctgccc cttactgctc catccccgtg gagctcagga gacccaggat gacatagcac
     3001 aaaggagggg gcctcaaccg ctttgcctca gtgacaggct ggcaggtggc cacacccctc
     3061 ccagccatca cccagtgctt gggggcctgg ccccacccac tgcctcttca ctgtgaggcc
     3121 aggacctcag gtgccaaggg gacattattc accgtgcagc aaatgcacgt aagtgcaagc
     3181 ttgcaggtac ccttagaagc tgtaatacgg gtgatggctt ttccaaaata aacaaactgc
     3241 acttagca
//
LOCUS       XM_032609873            2679 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ceramide-1-phosphate transfer protein
            (CPTP), transcript variant X3, mRNA.
ACCESSION   XM_032609873
VERSION     XM_032609873.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2679
                     /gene="CPTP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742357"
     CDS             1012..1656
                     /gene="CPTP"
                     /codon_start=1
                     /product="ceramide-1-phosphate transfer protein"
                     /protein_id="XP_032465764.1"
                     /db_xref="GeneID:116742357"
                     /translation="MDDLESEFNLKVVLLSFKQCLNEKEEVLLDHYLASWRGLVRFLN
                     SLGTIFSFISKDVVAKLQIMEQLCGGPQQEHYSTLQAMVAYEVGSQLVDLERRSRHPD
                     SGCRTVLRLHRALHWLQLFLEGVRTSPEDARTAALCTDSYNASLAAYHPWIIRRAVTV
                     AFCALPTRKVFLETMNVGSPEQAVEMLGEALPFIKRVYDISQRLYAEHALLDLP"
     misc_feature    1090..1530
                     /gene="CPTP"
                     /note="Glycolipid transfer protein (GLTP); Region: GLTP;
                     pfam08718"
                     /db_xref="CDD:462575"
ORIGIN      
        1 cggacgcggt gggatcgagc tggcgttcag gaaacccacc ccaaccgaac cgggcgtggg
       61 agggggcggc cgaggacccg actcccgcgc tggcccggac cccgggcccc tgagccatcc
      121 ctgggcctca gctggagcag gacccacccg agccccggat cccacctcgg cgcaacccgg
      181 agccccctta gcaggcgaga ctggggctgt ggtgctggag ggttgccccc tttttcctgg
      241 ggtccttcag cttgctgtca gccacagggc tgcggtgctc aggccggcct caggacgagc
      301 cctgaccttg ggaccgtgga ccgcccctgg gggagccttg gcggtgccct gcatcacctt
      361 cccagagctg gcaggctgcc cgcccccggc cgcgccgccc ctgcccttcc tgttttttcc
      421 aagctctgaa aggctgctgg cacctcctgt tggctgctgg ctcaggttct gcgcaggaag
      481 gccaggccca caggatgtct ggtgaccagg aaggtagccc tgagggcctc agaggccatc
      541 tgctcggtgg acagaagact gagggcctga gagaggggag gggtgttcta gaaacctccg
      601 gagtgttatc ttcctgagtc caggcccggc tgtcccccac acctgaagac agggtgagct
      661 cacctctggg cactccaccc agtgccaggc atgcggccaa gccgtggggc ctgcagggcc
      721 tcagcagcac ctactgggcc ccatcagatg ctcccagcag cctgggtggt gggcagggga
      781 gggtgtgcgg gcccgttttc cccaaagatg tgggacagga tcttagaaca gtgcacgatt
      841 tgcccgcaga gtggaaggca gaccccgccc aggcacacca gtgtgctctc ctggctgagc
      901 tctcaccaca cctcgggcga ccgggctccc acagtgctcc cagcgccaag agccaggaac
      961 ccccatgccc aaaggggtga gagcttgtcc tggacatgag ttcctgttga aatggatgac
     1021 ttggagtcag agtttaatct gaaagttgtc ctgctcagtt tcaagcagtg tctcaacgag
     1081 aaggaagagg tgctgctgga ccactacctc gccagctgga gggggctggt caggttcctg
     1141 aacagcctgg gcaccatctt ctcgttcatc tccaaggatg tggtggcgaa gctgcagatc
     1201 atggagcagc tgtgcggtgg cccccagcag gagcactata gcaccctgca ggccatggtg
     1261 gcctacgagg tgggcagcca gctggtagac ctggagaggc gctcccgcca ccccgactcg
     1321 ggctgccgga cggtgctgcg gctgcaccgc gccctgcact ggctgcagct cttcctggag
     1381 ggcgtccgca ccagccctga ggacgcacgc actgccgcgc tctgcactga ctcttacaat
     1441 gcctcgctgg ccgcctacca cccttggatc atccgccgcg ccgttaccgt ggccttctgt
     1501 gcactgccca cacgcaaggt cttcctggag accatgaacg tggggtcccc tgagcaggcc
     1561 gtggagatgc tgggcgaggc cctgcccttc atcaaacgcg tctacgacat ctcccagagg
     1621 ctctacgccg agcacgccct gctggaccta ccctaggggc tggcaggccc aggtggggtg
     1681 ggcttcccct aattcagagc tgggtggggg cagctgggac ccatcagtcc caccgtggaa
     1741 ctttctgggt ccccctgtga gctgagctcg tcgggagcca ttcacagcat ccagccgctg
     1801 cagacaggca tcacgaagaa ggcagatgct ggccgtctgc tccacgcccg gcctctcctt
     1861 tgcctgggca tctcatcttt accctcagct aagttacact catgtccagt caggcctctc
     1921 ccgggtggat gaagtgcagg aagcagtcag tgggggtcag gattagtgtt catggaaaag
     1981 ctgcccctgc ctgggggtca agtctgtgag ctacggggag tcgtggggcg caggacacag
     2041 tgtctgccca gctgggctgc cttgggcccc tctgtaacgg ctggctgtcc ccaggacagg
     2101 gagagagtcc tgggcagggg tcagcactgc aggctttccc cccgcccctc gcctcctcag
     2161 ccaggggccc acgtgtcctc agcagcgaca gcaggacctg aaaccccgag ggaaggactg
     2221 ccctgctgcc accgccctgc acacgtgtca gccgccacct gcggcctaga gtctgcatag
     2281 cacagcccga gaacccccag gatcccggga ctcctctggg ccagtgctgg ctcctccctc
     2341 cccagcatcc agcgagatgc tgtgctccct cttccctgcc ccttactgct ccatccccgt
     2401 ggagctcagg agacccagga tgacatagca caaaggaggg ggcctcaacc gctttgcctc
     2461 agtgacaggc tggcaggtgg ccacacccct cccagccatc acccagtgct tgggggcctg
     2521 gccccaccca ctgcctcttc actgtgaggc caggacctca ggtgccaagg ggacattatt
     2581 caccgtgcag caaatgcacg taagtgcaag cttgcaggta cccttagaag ctgtaatacg
     2641 ggtgatggct tttccaaaat aaacaaactg cacttagca
//
LOCUS       XM_032609883            2675 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ceramide-1-phosphate transfer protein
            (CPTP), transcript variant X4, mRNA.
ACCESSION   XM_032609883
VERSION     XM_032609883.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2675
                     /gene="CPTP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742357"
     CDS             1008..1652
                     /gene="CPTP"
                     /codon_start=1
                     /product="ceramide-1-phosphate transfer protein"
                     /protein_id="XP_032465774.1"
                     /db_xref="GeneID:116742357"
                     /translation="MDDLESEFNLKVVLLSFKQCLNEKEEVLLDHYLASWRGLVRFLN
                     SLGTIFSFISKDVVAKLQIMEQLCGGPQQEHYSTLQAMVAYEVGSQLVDLERRSRHPD
                     SGCRTVLRLHRALHWLQLFLEGVRTSPEDARTAALCTDSYNASLAAYHPWIIRRAVTV
                     AFCALPTRKVFLETMNVGSPEQAVEMLGEALPFIKRVYDISQRLYAEHALLDLP"
     misc_feature    1086..1526
                     /gene="CPTP"
                     /note="Glycolipid transfer protein (GLTP); Region: GLTP;
                     pfam08718"
                     /db_xref="CDD:462575"
ORIGIN      
        1 cgggcggtgg gtcagtggcc gggggcgggg ccgaggcctc cactgcggct gcgcggggcc
       61 ggtgagggtc ggcgttgcag agtggaaggc agaccccgcc caggcacacc agtgtgctct
      121 cctggctgag ctctcaccac acctcgggcg accgggctcc cacagtgctc ccagcgccaa
      181 gagccaggaa cccccatgcc caaaggggtg agagcttgtc ctggacatga ggtgagacac
      241 agctcagtcc ccagggcctg tcagagccac accgcagtgc aggccccagg cacccaggga
      301 ggcaggggct gaggtgccca gcgacaccca ctaacgcttg ggcacttggg tgtttgtgga
      361 gtgactatat gaatgccaga atccagggca ggcctctggc ctggggcact tctggactcc
      421 ctggggctgg gggagggcct gtggctgtct tcggagcatg agaaaacctg tgtgtgctcc
      481 agctgccctt ctgtgtgcga cgggtacagt tacagtagga gtgagaagac tggtgtctgt
      541 ccatctgtcg acaaatgctg accccgcagc ctctgctctg tgtgttgcga tgtagcttca
      601 agcaaggaag ggcgtggccc tccagcctca gcccacagtc tgtctctcca ctgcttatcc
      661 ttttacctac tgtgttgagc ttcctgtctt tgctattatc acacacacac acctgccgct
      721 aggatgttgc ctcagcgggg ccaggctgtc ggtctcactc agtgcactgg aatgggtgct
      781 tggctctgga tggggactca gcaaatactt ctccagttag taggaacaga cacacactca
      841 agagagacag actataaacc agcaaggaaa tctgagcaga gacgcctcct gcgagtgaga
      901 cgtggcaggg gtttgacaag cttgagcgtc ggggggccgt gctaagagcc gcgccaggcc
      961 tgtgtgtctg cgagggtgtg acccgagcag agcgagttcc tgttgaaatg gatgacttgg
     1021 agtcagagtt taatctgaaa gttgtcctgc tcagtttcaa gcagtgtctc aacgagaagg
     1081 aagaggtgct gctggaccac tacctcgcca gctggagggg gctggtcagg ttcctgaaca
     1141 gcctgggcac catcttctcg ttcatctcca aggatgtggt ggcgaagctg cagatcatgg
     1201 agcagctgtg cggtggcccc cagcaggagc actatagcac cctgcaggcc atggtggcct
     1261 acgaggtggg cagccagctg gtagacctgg agaggcgctc ccgccacccc gactcgggct
     1321 gccggacggt gctgcggctg caccgcgccc tgcactggct gcagctcttc ctggagggcg
     1381 tccgcaccag ccctgaggac gcacgcactg ccgcgctctg cactgactct tacaatgcct
     1441 cgctggccgc ctaccaccct tggatcatcc gccgcgccgt taccgtggcc ttctgtgcac
     1501 tgcccacacg caaggtcttc ctggagacca tgaacgtggg gtcccctgag caggccgtgg
     1561 agatgctggg cgaggccctg cccttcatca aacgcgtcta cgacatctcc cagaggctct
     1621 acgccgagca cgccctgctg gacctaccct aggggctggc aggcccaggt ggggtgggct
     1681 tcccctaatt cagagctggg tgggggcagc tgggacccat cagtcccacc gtggaacttt
     1741 ctgggtcccc ctgtgagctg agctcgtcgg gagccattca cagcatccag ccgctgcaga
     1801 caggcatcac gaagaaggca gatgctggcc gtctgctcca cgcccggcct ctcctttgcc
     1861 tgggcatctc atctttaccc tcagctaagt tacactcatg tccagtcagg cctctcccgg
     1921 gtggatgaag tgcaggaagc agtcagtggg ggtcaggatt agtgttcatg gaaaagctgc
     1981 ccctgcctgg gggtcaagtc tgtgagctac ggggagtcgt ggggcgcagg acacagtgtc
     2041 tgcccagctg ggctgccttg ggcccctctg taacggctgg ctgtccccag gacagggaga
     2101 gagtcctggg caggggtcag cactgcaggc tttccccccg cccctcgcct cctcagccag
     2161 gggcccacgt gtcctcagca gcgacagcag gacctgaaac cccgagggaa ggactgccct
     2221 gctgccaccg ccctgcacac gtgtcagccg ccacctgcgg cctagagtct gcatagcaca
     2281 gcccgagaac ccccaggatc ccgggactcc tctgggccag tgctggctcc tccctcccca
     2341 gcatccagcg agatgctgtg ctccctcttc cctgcccctt actgctccat ccccgtggag
     2401 ctcaggagac ccaggatgac atagcacaaa ggagggggcc tcaaccgctt tgcctcagtg
     2461 acaggctggc aggtggccac acccctccca gccatcaccc agtgcttggg ggcctggccc
     2521 cacccactgc ctcttcactg tgaggccagg acctcaggtg ccaaggggac attattcacc
     2581 gtgcagcaaa tgcacgtaag tgcaagcttg caggtaccct tagaagctgt aatacgggtg
     2641 atggcttttc caaaataaac aaactgcact tagca
//
LOCUS       XM_032609892            2859 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ceramide-1-phosphate transfer protein
            (CPTP), transcript variant X5, mRNA.
ACCESSION   XM_032609892
VERSION     XM_032609892.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2859
                     /gene="CPTP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742357"
     CDS             1192..1836
                     /gene="CPTP"
                     /codon_start=1
                     /product="ceramide-1-phosphate transfer protein"
                     /protein_id="XP_032465783.1"
                     /db_xref="GeneID:116742357"
                     /translation="MDDLESEFNLKVVLLSFKQCLNEKEEVLLDHYLASWRGLVRFLN
                     SLGTIFSFISKDVVAKLQIMEQLCGGPQQEHYSTLQAMVAYEVGSQLVDLERRSRHPD
                     SGCRTVLRLHRALHWLQLFLEGVRTSPEDARTAALCTDSYNASLAAYHPWIIRRAVTV
                     AFCALPTRKVFLETMNVGSPEQAVEMLGEALPFIKRVYDISQRLYAEHALLDLP"
     misc_feature    1270..1710
                     /gene="CPTP"
                     /note="Glycolipid transfer protein (GLTP); Region: GLTP;
                     pfam08718"
                     /db_xref="CDD:462575"
ORIGIN      
        1 cggacgcggt gggatcgagc tggcgttcag gaaacccacc ccaaccgaac cgggcgtggg
       61 agggggcggc cgaggacccg actcccgcgc tggcccggac cccgggcccc tgagccatcc
      121 ctgggcctca gctggagcag gacccacccg agccccggat cccacctcgg cgcaacccgg
      181 agccccctta gcaggcgaga ctggggctgt ggtgctggag ggttgccccc tttttcctgg
      241 ggtccttcag cttgctgtca gccacagggc tgcggtgctc aggccggcct caggacgagc
      301 cctgaccttg ggaccgtgga ccgcccctgg gggagccttg gcggtgccct gcatcacctt
      361 cccagagctg gcaggctgcc cgcccccggc cgcgccgccc ctgcccttcc tgttttttcc
      421 aagctctgaa aggctgctgg cacctcctgt tggctgctgg ctcaggttct gcgcaggaag
      481 gccaggccca caggatgtct ggtgaccagg aaggtagccc tgagggcctc agaggccatc
      541 tgctcggtgg acagaagact gagggcctga gagaggggag gggtgttcta gaaacctccg
      601 gagtgttatc ttcctgagtc caggcccggc tgtcccccac acctgaagac agggtgagct
      661 cacctctggg cactccaccc agtgccaggc atgcggccaa gccgtggggc ctgcagggcc
      721 tcagcagcac ctactgggcc ccatcagatg ctcccagcag cctgggtggt gggcagggga
      781 gggtgtgcgg gcccgttttc cccaaagatg tgggacagga tcttagaaca gtgcacgatt
      841 tgcccgcaga gtggaaggca gaccccgccc aggcacacca gtgtgctctc ctggctgagc
      901 tctcaccaca cctcgggcga ccgggctccc acagtgctcc cagcgccaag agccaggaac
      961 ccccatgccc aaaggggtga gagcttgtcc tggacatgag ttagtaggaa cagacacaca
     1021 ctcaagagag acagactata aaccagcaag gaaatctgag cagagacgcc tcctgcgagt
     1081 gagacgtggc aggggtttga caagcttgag cgtcgggggg ccgtgctaag agccgcgcca
     1141 ggcctgtgtg tctgcgaggg tgtgacccga gcagagcgag ttcctgttga aatggatgac
     1201 ttggagtcag agtttaatct gaaagttgtc ctgctcagtt tcaagcagtg tctcaacgag
     1261 aaggaagagg tgctgctgga ccactacctc gccagctgga gggggctggt caggttcctg
     1321 aacagcctgg gcaccatctt ctcgttcatc tccaaggatg tggtggcgaa gctgcagatc
     1381 atggagcagc tgtgcggtgg cccccagcag gagcactata gcaccctgca ggccatggtg
     1441 gcctacgagg tgggcagcca gctggtagac ctggagaggc gctcccgcca ccccgactcg
     1501 ggctgccgga cggtgctgcg gctgcaccgc gccctgcact ggctgcagct cttcctggag
     1561 ggcgtccgca ccagccctga ggacgcacgc actgccgcgc tctgcactga ctcttacaat
     1621 gcctcgctgg ccgcctacca cccttggatc atccgccgcg ccgttaccgt ggccttctgt
     1681 gcactgccca cacgcaaggt cttcctggag accatgaacg tggggtcccc tgagcaggcc
     1741 gtggagatgc tgggcgaggc cctgcccttc atcaaacgcg tctacgacat ctcccagagg
     1801 ctctacgccg agcacgccct gctggaccta ccctaggggc tggcaggccc aggtggggtg
     1861 ggcttcccct aattcagagc tgggtggggg cagctgggac ccatcagtcc caccgtggaa
     1921 ctttctgggt ccccctgtga gctgagctcg tcgggagcca ttcacagcat ccagccgctg
     1981 cagacaggca tcacgaagaa ggcagatgct ggccgtctgc tccacgcccg gcctctcctt
     2041 tgcctgggca tctcatcttt accctcagct aagttacact catgtccagt caggcctctc
     2101 ccgggtggat gaagtgcagg aagcagtcag tgggggtcag gattagtgtt catggaaaag
     2161 ctgcccctgc ctgggggtca agtctgtgag ctacggggag tcgtggggcg caggacacag
     2221 tgtctgccca gctgggctgc cttgggcccc tctgtaacgg ctggctgtcc ccaggacagg
     2281 gagagagtcc tgggcagggg tcagcactgc aggctttccc cccgcccctc gcctcctcag
     2341 ccaggggccc acgtgtcctc agcagcgaca gcaggacctg aaaccccgag ggaaggactg
     2401 ccctgctgcc accgccctgc acacgtgtca gccgccacct gcggcctaga gtctgcatag
     2461 cacagcccga gaacccccag gatcccggga ctcctctggg ccagtgctgg ctcctccctc
     2521 cccagcatcc agcgagatgc tgtgctccct cttccctgcc ccttactgct ccatccccgt
     2581 ggagctcagg agacccagga tgacatagca caaaggaggg ggcctcaacc gctttgcctc
     2641 agtgacaggc tggcaggtgg ccacacccct cccagccatc acccagtgct tgggggcctg
     2701 gccccaccca ctgcctcttc actgtgaggc caggacctca ggtgccaagg ggacattatt
     2761 caccgtgcag caaatgcacg taagtgcaag cttgcaggta cccttagaag ctgtaatacg
     2821 ggtgatggct tttccaaaat aaacaaactg cacttagca
//
LOCUS       XM_032609901            1909 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ceramide-1-phosphate transfer protein
            (CPTP), transcript variant X6, mRNA.
ACCESSION   XM_032609901
VERSION     XM_032609901.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1909
                     /gene="CPTP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742357"
     CDS             242..886
                     /gene="CPTP"
                     /codon_start=1
                     /product="ceramide-1-phosphate transfer protein"
                     /protein_id="XP_032465792.1"
                     /db_xref="GeneID:116742357"
                     /translation="MDDLESEFNLKVVLLSFKQCLNEKEEVLLDHYLASWRGLVRFLN
                     SLGTIFSFISKDVVAKLQIMEQLCGGPQQEHYSTLQAMVAYEVGSQLVDLERRSRHPD
                     SGCRTVLRLHRALHWLQLFLEGVRTSPEDARTAALCTDSYNASLAAYHPWIIRRAVTV
                     AFCALPTRKVFLETMNVGSPEQAVEMLGEALPFIKRVYDISQRLYAEHALLDLP"
     misc_feature    320..760
                     /gene="CPTP"
                     /note="Glycolipid transfer protein (GLTP); Region: GLTP;
                     pfam08718"
                     /db_xref="CDD:462575"
ORIGIN      
        1 gggcggtggg tcagtggccg ggggcggggc cgaggcctcc actgcggctg cgcggggccg
       61 gtgagggtcg gcgttgcaga gtggaaggca gaccccgccc aggcacacca gtgtgctctc
      121 ctggctgagc tctcaccaca cctcgggcga ccgggctccc acagtgctcc cagcgccaag
      181 agccaggaac ccccatgccc aaaggggtga gagcttgtcc tggacatgag ttcctgttga
      241 aatggatgac ttggagtcag agtttaatct gaaagttgtc ctgctcagtt tcaagcagtg
      301 tctcaacgag aaggaagagg tgctgctgga ccactacctc gccagctgga gggggctggt
      361 caggttcctg aacagcctgg gcaccatctt ctcgttcatc tccaaggatg tggtggcgaa
      421 gctgcagatc atggagcagc tgtgcggtgg cccccagcag gagcactata gcaccctgca
      481 ggccatggtg gcctacgagg tgggcagcca gctggtagac ctggagaggc gctcccgcca
      541 ccccgactcg ggctgccgga cggtgctgcg gctgcaccgc gccctgcact ggctgcagct
      601 cttcctggag ggcgtccgca ccagccctga ggacgcacgc actgccgcgc tctgcactga
      661 ctcttacaat gcctcgctgg ccgcctacca cccttggatc atccgccgcg ccgttaccgt
      721 ggccttctgt gcactgccca cacgcaaggt cttcctggag accatgaacg tggggtcccc
      781 tgagcaggcc gtggagatgc tgggcgaggc cctgcccttc atcaaacgcg tctacgacat
      841 ctcccagagg ctctacgccg agcacgccct gctggaccta ccctaggggc tggcaggccc
      901 aggtggggtg ggcttcccct aattcagagc tgggtggggg cagctgggac ccatcagtcc
      961 caccgtggaa ctttctgggt ccccctgtga gctgagctcg tcgggagcca ttcacagcat
     1021 ccagccgctg cagacaggca tcacgaagaa ggcagatgct ggccgtctgc tccacgcccg
     1081 gcctctcctt tgcctgggca tctcatcttt accctcagct aagttacact catgtccagt
     1141 caggcctctc ccgggtggat gaagtgcagg aagcagtcag tgggggtcag gattagtgtt
     1201 catggaaaag ctgcccctgc ctgggggtca agtctgtgag ctacggggag tcgtggggcg
     1261 caggacacag tgtctgccca gctgggctgc cttgggcccc tctgtaacgg ctggctgtcc
     1321 ccaggacagg gagagagtcc tgggcagggg tcagcactgc aggctttccc cccgcccctc
     1381 gcctcctcag ccaggggccc acgtgtcctc agcagcgaca gcaggacctg aaaccccgag
     1441 ggaaggactg ccctgctgcc accgccctgc acacgtgtca gccgccacct gcggcctaga
     1501 gtctgcatag cacagcccga gaacccccag gatcccggga ctcctctggg ccagtgctgg
     1561 ctcctccctc cccagcatcc agcgagatgc tgtgctccct cttccctgcc ccttactgct
     1621 ccatccccgt ggagctcagg agacccagga tgacatagca caaaggaggg ggcctcaacc
     1681 gctttgcctc agtgacaggc tggcaggtgg ccacacccct cccagccatc acccagtgct
     1741 tgggggcctg gccccaccca ctgcctcttc actgtgaggc caggacctca ggtgccaagg
     1801 ggacattatt caccgtgcag caaatgcacg taagtgcaag cttgcaggta cccttagaag
     1861 ctgtaatacg ggtgatggct tttccaaaat aaacaaactg cacttagca
//
LOCUS       XM_032609912            2332 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ceramide-1-phosphate transfer protein
            (CPTP), transcript variant X7, mRNA.
ACCESSION   XM_032609912
VERSION     XM_032609912.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2332
                     /gene="CPTP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742357"
     CDS             665..1309
                     /gene="CPTP"
                     /codon_start=1
                     /product="ceramide-1-phosphate transfer protein"
                     /protein_id="XP_032465803.1"
                     /db_xref="GeneID:116742357"
                     /translation="MDDLESEFNLKVVLLSFKQCLNEKEEVLLDHYLASWRGLVRFLN
                     SLGTIFSFISKDVVAKLQIMEQLCGGPQQEHYSTLQAMVAYEVGSQLVDLERRSRHPD
                     SGCRTVLRLHRALHWLQLFLEGVRTSPEDARTAALCTDSYNASLAAYHPWIIRRAVTV
                     AFCALPTRKVFLETMNVGSPEQAVEMLGEALPFIKRVYDISQRLYAEHALLDLP"
     misc_feature    743..1183
                     /gene="CPTP"
                     /note="Glycolipid transfer protein (GLTP); Region: GLTP;
                     pfam08718"
                     /db_xref="CDD:462575"
ORIGIN      
        1 cggacgcggt gggatcgagc tggcgttcag gaaacccacc ccaaccgaac cgggcgtggg
       61 agggggcggc cgaggacccg actcccgcgc tggcccggac cccgggcccc tgagccatcc
      121 ctgggcctca gctggagcag gacccacccg agccccggat cccacctcgg cgcaacccgg
      181 agccccctta gcaggcgaga ctggggctgt ggtgctggag ggttgccccc tttttcctgg
      241 ggtccttcag cttgctgtca gccacagggc tgcggtgctc aggccggcct caggacgagc
      301 cctgaccttg ggaccgtgga ccgcccctgg gggagccttg gcggtgccct gcatcacctt
      361 cccagagctg gcaggctgcc cgcccccggc cgcgccgccc ctgcccttcc tgttttttcc
      421 aagctctgaa aggctgctgg cacctcctgt tggctgctgg ctcaggttct gcgcaggaag
      481 gccaggccca caggatgtct ggtgaccagg aaggtagccc tgagggcctc agaggccatc
      541 tgctcggtgg acagaagact gagggcctga gagaggggag gggtgttcta gaaacctccg
      601 gagtgttatc ttcctgagtc caggcccggc tgtcccccac acctgaagac aggttcctgt
      661 tgaaatggat gacttggagt cagagtttaa tctgaaagtt gtcctgctca gtttcaagca
      721 gtgtctcaac gagaaggaag aggtgctgct ggaccactac ctcgccagct ggagggggct
      781 ggtcaggttc ctgaacagcc tgggcaccat cttctcgttc atctccaagg atgtggtggc
      841 gaagctgcag atcatggagc agctgtgcgg tggcccccag caggagcact atagcaccct
      901 gcaggccatg gtggcctacg aggtgggcag ccagctggta gacctggaga ggcgctcccg
      961 ccaccccgac tcgggctgcc ggacggtgct gcggctgcac cgcgccctgc actggctgca
     1021 gctcttcctg gagggcgtcc gcaccagccc tgaggacgca cgcactgccg cgctctgcac
     1081 tgactcttac aatgcctcgc tggccgccta ccacccttgg atcatccgcc gcgccgttac
     1141 cgtggccttc tgtgcactgc ccacacgcaa ggtcttcctg gagaccatga acgtggggtc
     1201 ccctgagcag gccgtggaga tgctgggcga ggccctgccc ttcatcaaac gcgtctacga
     1261 catctcccag aggctctacg ccgagcacgc cctgctggac ctaccctagg ggctggcagg
     1321 cccaggtggg gtgggcttcc cctaattcag agctgggtgg gggcagctgg gacccatcag
     1381 tcccaccgtg gaactttctg ggtccccctg tgagctgagc tcgtcgggag ccattcacag
     1441 catccagccg ctgcagacag gcatcacgaa gaaggcagat gctggccgtc tgctccacgc
     1501 ccggcctctc ctttgcctgg gcatctcatc tttaccctca gctaagttac actcatgtcc
     1561 agtcaggcct ctcccgggtg gatgaagtgc aggaagcagt cagtgggggt caggattagt
     1621 gttcatggaa aagctgcccc tgcctggggg tcaagtctgt gagctacggg gagtcgtggg
     1681 gcgcaggaca cagtgtctgc ccagctgggc tgccttgggc ccctctgtaa cggctggctg
     1741 tccccaggac agggagagag tcctgggcag gggtcagcac tgcaggcttt ccccccgccc
     1801 ctcgcctcct cagccagggg cccacgtgtc ctcagcagcg acagcaggac ctgaaacccc
     1861 gagggaagga ctgccctgct gccaccgccc tgcacacgtg tcagccgcca cctgcggcct
     1921 agagtctgca tagcacagcc cgagaacccc caggatcccg ggactcctct gggccagtgc
     1981 tggctcctcc ctccccagca tccagcgaga tgctgtgctc cctcttccct gccccttact
     2041 gctccatccc cgtggagctc aggagaccca ggatgacata gcacaaagga gggggcctca
     2101 accgctttgc ctcagtgaca ggctggcagg tggccacacc cctcccagcc atcacccagt
     2161 gcttgggggc ctggccccac ccactgcctc ttcactgtga ggccaggacc tcaggtgcca
     2221 aggggacatt attcaccgtg cagcaaatgc acgtaagtgc aagcttgcag gtacccttag
     2281 aagctgtaat acgggtgatg gcttttccaa aataaacaaa ctgcacttag ca
//
LOCUS       XM_032609923            1713 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ceramide-1-phosphate transfer protein
            (CPTP), transcript variant X8, mRNA.
ACCESSION   XM_032609923
VERSION     XM_032609923.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1713
                     /gene="CPTP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742357"
     CDS             46..690
                     /gene="CPTP"
                     /codon_start=1
                     /product="ceramide-1-phosphate transfer protein"
                     /protein_id="XP_032465814.1"
                     /db_xref="GeneID:116742357"
                     /translation="MDDLESEFNLKVVLLSFKQCLNEKEEVLLDHYLASWRGLVRFLN
                     SLGTIFSFISKDVVAKLQIMEQLCGGPQQEHYSTLQAMVAYEVGSQLVDLERRSRHPD
                     SGCRTVLRLHRALHWLQLFLEGVRTSPEDARTAALCTDSYNASLAAYHPWIIRRAVTV
                     AFCALPTRKVFLETMNVGSPEQAVEMLGEALPFIKRVYDISQRLYAEHALLDLP"
     misc_feature    124..564
                     /gene="CPTP"
                     /note="Glycolipid transfer protein (GLTP); Region: GLTP;
                     pfam08718"
                     /db_xref="CDD:462575"
ORIGIN      
        1 ggctgcgcgg ggccggtgag ggtcggcgtt gcagttcctg ttgaaatgga tgacttggag
       61 tcagagttta atctgaaagt tgtcctgctc agtttcaagc agtgtctcaa cgagaaggaa
      121 gaggtgctgc tggaccacta cctcgccagc tggagggggc tggtcaggtt cctgaacagc
      181 ctgggcacca tcttctcgtt catctccaag gatgtggtgg cgaagctgca gatcatggag
      241 cagctgtgcg gtggccccca gcaggagcac tatagcaccc tgcaggccat ggtggcctac
      301 gaggtgggca gccagctggt agacctggag aggcgctccc gccaccccga ctcgggctgc
      361 cggacggtgc tgcggctgca ccgcgccctg cactggctgc agctcttcct ggagggcgtc
      421 cgcaccagcc ctgaggacgc acgcactgcc gcgctctgca ctgactctta caatgcctcg
      481 ctggccgcct accacccttg gatcatccgc cgcgccgtta ccgtggcctt ctgtgcactg
      541 cccacacgca aggtcttcct ggagaccatg aacgtggggt cccctgagca ggccgtggag
      601 atgctgggcg aggccctgcc cttcatcaaa cgcgtctacg acatctccca gaggctctac
      661 gccgagcacg ccctgctgga cctaccctag gggctggcag gcccaggtgg ggtgggcttc
      721 ccctaattca gagctgggtg ggggcagctg ggacccatca gtcccaccgt ggaactttct
      781 gggtccccct gtgagctgag ctcgtcggga gccattcaca gcatccagcc gctgcagaca
      841 ggcatcacga agaaggcaga tgctggccgt ctgctccacg cccggcctct cctttgcctg
      901 ggcatctcat ctttaccctc agctaagtta cactcatgtc cagtcaggcc tctcccgggt
      961 ggatgaagtg caggaagcag tcagtggggg tcaggattag tgttcatgga aaagctgccc
     1021 ctgcctgggg gtcaagtctg tgagctacgg ggagtcgtgg ggcgcaggac acagtgtctg
     1081 cccagctggg ctgccttggg cccctctgta acggctggct gtccccagga cagggagaga
     1141 gtcctgggca ggggtcagca ctgcaggctt tccccccgcc cctcgcctcc tcagccaggg
     1201 gcccacgtgt cctcagcagc gacagcagga cctgaaaccc cgagggaagg actgccctgc
     1261 tgccaccgcc ctgcacacgt gtcagccgcc acctgcggcc tagagtctgc atagcacagc
     1321 ccgagaaccc ccaggatccc gggactcctc tgggccagtg ctggctcctc cctccccagc
     1381 atccagcgag atgctgtgct ccctcttccc tgccccttac tgctccatcc ccgtggagct
     1441 caggagaccc aggatgacat agcacaaagg agggggcctc aaccgctttg cctcagtgac
     1501 aggctggcag gtggccacac ccctcccagc catcacccag tgcttggggg cctggcccca
     1561 cccactgcct cttcactgtg aggccaggac ctcaggtgcc aaggggacat tattcaccgt
     1621 gcagcaaatg cacgtaagtg caagcttgca ggtaccctta gaagctgtaa tacgggtgat
     1681 ggcttttcca aaataaacaa actgcactta gca
//
LOCUS       XM_032609933            4626 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus taste 1 receptor member 3 (TAS1R3), mRNA.
ACCESSION   XM_032609933
VERSION     XM_032609933.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 12 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1720              VOSU01000011.1     481947-483666
            1721-1930           VOSU01000011.1     483668-483877
            1931-2251           VOSU01000011.1     483954-484274
            2252-2252           "N"                1-1
            2253-2611           VOSU01000011.1     484275-484633
            2612-2612           "N"                1-1
            2613-2713           VOSU01000011.1     484634-484734
            2714-2818           VOSU01000011.1     484835-484939
            2819-2819           "N"                1-1
            2820-2851           VOSU01000011.1     484940-484971
            2852-2976           VOSU01000011.1     485081-485205
            2977-3043           VOSU01000011.1     485336-485402
            3044-3044           "N"                1-1
            3045-3088           VOSU01000011.1     485403-485446
            3089-3089           "N"                1-1
            3090-3157           VOSU01000011.1     485447-485514
            3158-3158           "N"                1-1
            3159-3253           VOSU01000011.1     485515-485609
            3254-3406           VOSU01000011.1     485611-485763
            3407-3408           "NN"               1-2
            3409-3457           VOSU01000011.1     485764-485812
            3458-3745           VOSU01000011.1     485814-486101
            3746-3850           VOSU01000011.1     486103-486207
            3851-4626           VOSU01000011.1     486210-486985
FEATURES             Location/Qualifiers
     source          1..4626
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4626
                     /gene="TAS1R3"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 8 bases in 7 codons;
                     deleted 6 bases in 5 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 83% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116742376"
     CDS             1505..3892
                     /gene="TAS1R3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 8 bases in 7 codons;
                     deleted 6 bases in 5 codons; substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:3803..3805,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: taste receptor type 1
                     member 3"
                     /protein_id="XP_032465824.1"
                     /db_xref="GeneID:116742376"
                     /translation="MPGLALLGLVAVLGVRAGAPLCLSRQLSWPGDYVLGGAAPRAQL
                     KMLSSPGLLWALATTTAMEEINSGSVLIPGLRLGYNLFDTCWEPVVAVKPSLVFMAKA
                     GSCSVAPYCDYMQYQPHVLAVIGPHSFEVALVTSFFLMPHVSYGASTDRLSSRETFPS
                     FLRTVPSDRVQVAAVVELMRELHWSWVATVGSEDEYSWQGPCLFSGLADAKGTCVVRE
                     GRMPLPRAGSPRLGSVQGLPSRVNQSSVQVVXVFSSACAARTLFSYSIRYRLSPKMWV
                     ASEAWLPSNLVMTLPSMDRVGTVLGVPRQGAQMPEFPSYVQTCLALAADAAYCASLDA
                     GQPGLEEHAVGPRCPQRDCITLENVTDGLLHRQTFXAFAAVYGVAQALHNMLLCDTSG
                     CPVREPVRPWQHPENMHNLSLRFDTNGNVDVNHDLKLWVRWDRTPTXQMRWHTQGNQE
                     PVPQCSRQCKEGQVHRVKGFHSCCYDGADCKAGSDQRNPGDTPLSSPALCSKCDQDHR
                     SPDWSXRCLPRRPKFLGLLLXLGPALGLVLAALGLFIWRRHSPXVQASGGGATGLLCL
                     GLVCLSVLLFPGRPSPADCLAQPPLHDLLLTGCWSTPFLQAAEIFVGSELQQSWADRL
                     CSRLWGAGWYXFPPEVPTAWQVPPMEALVHCHVRSWVSFGLVHATNATLAFLCFLGTF
                     PVKSWPGGYNGARGLTFAMLAYFITWSPSSPFADVHVVSQPAVQMGAILFCVLGILGT
                     SHLPKCYLLLWRPDLNTPESSWEGVWXRQRARQQWGQEGDSGKKQAAPDPVTSPQ"
     misc_feature    1592..2857
                     /gene="TAS1R3"
                     /note="Type 1 periplasmic binding fold superfamily;
                     Region: Periplasmic_Binding_Protein_type1; cl10011"
                     /db_xref="CDD:471960"
     misc_feature    2855..3031
                     /gene="TAS1R3"
                     /note="Nine Cysteines Domain of family 3 GPCR; Region:
                     NCD3G; pfam07562"
                     /db_xref="CDD:462210"
     misc_feature    3134..3754
                     /gene="TAS1R3"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    3176..3235
                     /gene="TAS1R3"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    3260..3328
                     /gene="TAS1R3"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    3479..3550
                     /gene="TAS1R3"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    3584..3649
                     /gene="TAS1R3"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    3662..3739
                     /gene="TAS1R3"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 aaccccatct gttgccaagg tccacattat ccccacttta gaggtgaaaa aactgagtca
       61 cagaatcacc taagtggctg agttggaaac gcaggtctga ggccagccac acaccgtgta
      121 gagagaagga aatttgcttg gactgcagcc agtggaaggg ggctgctcac gccatggcag
      181 tggcatggac agaaggagga tgcctgtcag ggagggtcct ctcagacgct gccccaaagc
      241 cagcactgaa tagcagtgcc caacacaagc cacctccaag tccccacacc cagcggggac
      301 cagagcctgg tgtgcctgca aaggccagtg actgggggaa cagcctgggg ttcccccggg
      361 ccagacagtg agggctgcac gtgtgtgcac gtgtgcatgc aatggcgcag gggcaggccc
      421 tgcgcatgcg tgtagcgtgt gtgctgtgcc atgtgtgcgc gccccacagg gcagtggaga
      481 caggcaagca ctggatccct agaccacgtc ccataaatgt ctgccgggcc ccaccgccat
      541 accccagggc catcactagg ctcccccagc tcctctgggt gcctgcagcc tggtgtcagt
      601 gaggccccca gccccagact gggggagacg ggtcctcagg cacccagagg ctaagcggga
      661 gctgctggcc tggcccccag gcccccggca caccctgggg ctgacctggc tgcagcagcc
      721 cacttggtta cagcctttcc tccctcgctt gcatgccgct cctcaggccc agctgtgagc
      781 ctggcccgca caggcagggc ccaggccggt gtgagcacag ccagccacgg ggccccgcag
      841 cttctaggcc ttagaccctc aaggtgcact gtccccaggc aggccgagag cccacggcct
      901 ccccctcggg accctcccca ccctagccac ggggtggaag ccgggccatc tggccatcca
      961 ctgtcctcct ggctggcctg cagggctgtg ggacacacac ccccaggctg cccctgggcc
     1021 tgccgaggga gccacccctg cagtctccca ccctgactgc cgacagtgcc tccccagggc
     1081 tggagggagt gtttctgtgc ccactctctg gggcactggc acctccaagc ctgtctcaca
     1141 ggcagccgga gaatccaggc ccctctggca gacgggtaca gggtgacccc tctccaggaa
     1201 taggtgggtg ccaggggctt gggcacaggc aggtagcaag gtcacagtca gcggctgccc
     1261 aaagcctgcc tgctcgggtc actgtcagcc agagagccta gtggtggcgt caggatgagt
     1321 ccaatgtgag catacctgtg gggcccagga gacggagaac atctccaggg ccccgagctg
     1381 gcaggtgagg acagacaagc gctttgctga acaaatcctc tgcccctccc cgccccgact
     1441 ccccatatct ggcgccccgg ccagtctgcc cacttgccgt ccctgctgga agctgccacc
     1501 tgccatgcca ggcctggctc tcctgggcct tgtggctgtc ctgggcgtca gggcaggggc
     1561 cccgctgtgc ctgtcccggc agctcagctg gccaggggac tacgtgctgg ggggcgctgc
     1621 cccccgggct cagctgaaga tgctctcgtc ccctgggctg ctctgggcgc tggccacgac
     1681 gacggccatg gaggagatca acagcgggtc cgtcctgatc ccggggctgc gcctgggcta
     1741 caacctcttc gacacgtgct gggagcccgt ggttgccgtg aagcccagct tggtgttcat
     1801 ggccaaggcc ggcagctgca gcgtcgcccc ctactgcgat tatatgcagt accagcccca
     1861 cgtgctggcc gtcatcgggc cccactcctt cgaggtcgcc ctggtcacca gcttcttcct
     1921 catgccgcac gtcagctacg gcgccagcac ggaccggctg agcagccgcg agacgttccc
     1981 gtccttcctc cgcacggtgc ccagcgaccg cgtgcaggtg gcggccgtgg tggagctgat
     2041 gcgggagctg cactggagct gggtggccac cgtgggcagc gaagacgagt acagctggca
     2101 gggcccgtgc ctcttctccg gcctggccga cgccaagggc acttgcgtcg tgcgcgaggg
     2161 ccggatgccg ctgcccagag ccggcagccc gcggctgggc tccgtgcagg gcctgccaag
     2221 ccgggtgaac cagagcagcg tgcaggtggt gnaggtgttc tcctctgcct gtgccgcccg
     2281 caccctcttc agctacagca tccgctacag gctctcgccc aagatgtggg tggccagcga
     2341 ggcctggctg ccctcaaacc tggtcatgac gctgcccagc atggaccggg tgggcaccgt
     2401 gctaggcgtt ccgcgtcagg gcgcccagat gcccgagttc ccgtcctacg tgcagacgtg
     2461 cctggctctg gccgcggacg ccgcctactg cgcctcgctg gacgcagggc agccaggcct
     2521 ggaggagcac gcggtggggc cgcgctgccc ccagcgtgac tgcatcaccc tggagaacgt
     2581 gactgacggg ctgctgcacc gccagacctt cngcgccttc gcagccgtgt acggcgtggc
     2641 ccaggcgctc cacaacatgc tgctctgcga cacctcgggc tgccccgtgc gggagcccgt
     2701 gcggccctgg cagcacccgg agaacatgca caacctgagc ctgcggtttg acaccaacgg
     2761 gaacgtggac gtgaatcatg acctgaagct gtgggtacgg tgggaccgga cgcccactnc
     2821 ccagatgagg tggcacacgc agggaaacca ggagcccgtg ccccagtgct cgcggcagtg
     2881 caaggagggc caggtgcacc gcgttaaggg cttccactcc tgctgttacg acggtgccga
     2941 ctgcaaggca ggcagcgacc agcgcaaccc aggtgacacc cccctctcct cccctgccct
     3001 ctgcagcaag tgtgaccagg accacaggtc cccggactgg agcnaccggt gcctcccccg
     3061 ccggcccaag ttcctggggc tgcttctgnc tctgggcccg gctctgggcc tggtgctggc
     3121 agccctggga ctcttcatct ggcgccggca cagcccantg gttcaggcct cgggtggggg
     3181 ggccacaggc ctgctctgcc tgggcctcgt ctgcctcagc gtcctcctgt ttcccggccg
     3241 gcccagccct gccgactgcc tggcccagcc gccgctgcac gacctcctgc tcaccggctg
     3301 ctggagcaca cccttcctgc aggcggctga gatcttcgtg gggtcagagc tgcagcagag
     3361 ctgggcagac cggctctgca gccgcctgtg gggcgctggc tggtatnnct tcccgccgga
     3421 ggtgccgaca gcctggcaag tgccacccat ggaggcgctg gtgcactgcc acgtgcgctc
     3481 ctgggtcagc ttcggcctgg tgcacgccac caacgccacg ctggctttcc tctgcttcct
     3541 gggcaccttc ccggtaaaga gctggcccgg gggctacaac ggtgcccgcg gcctgacctt
     3601 tgccatgctg gcctacttca tcacctggtc tccttcgtcc ccctttgctg acgtgcacgt
     3661 ggtctcccag cccgccgtgc agatgggtgc catcctcttc tgtgtgctgg gcatcctggg
     3721 cacctcccac ctgcctaagt gctacctgct gctgtggcgg ccggacctca acacccctga
     3781 gtcttcctgg gagggagtct ggtgacgcca gagggcgagg cagcagtggg ggcaggaagg
     3841 agactcaggg aaaaaacaag cggcccctga cccagtgacc tcaccccagt gaactcatac
     3901 ctagtcaagg tgcccccaga ccaagtccct atagcagcaa cctacagact gtgccccaac
     3961 tccgctgtga ctccccagcc ctacattctg ctgaccttga ccccacagtg accctccaga
     4021 gtgcataagg ggcctcagct ccgggggatc tcaacccctg gggccccaga ggcaggctct
     4081 gtccctgccc cagccaagcc ctggcctgca caggtgaccc agcgccactg ttccagacag
     4141 aggcccatgg aggcttcctc ggggcccccc gtagcccagg ctgagcgcac aggaaagccc
     4201 ccagccaaac catgtgaagg caaagctggg taccacttgc ctggctgggc ccagcctggg
     4261 gtccccaccc agcatcctgt ccaagcatcg taggagtggg aggttggtag gtggggtggg
     4321 gctttcttga cccctctgca ggggtgtgtg cctgactgtg ggccccagtg cagggcagag
     4381 acccgctcag gaaggagggg gcacccagct tccttctctc cctggccagt gagccagtag
     4441 actgtggtca gtcccctcca gcaccgcgga cagagcccgg ccagggtcgg gggtcagcac
     4501 caaggccagc caccagcctc aaggacgacc ccaccccacc ccaccctcca ctcccagcca
     4561 cgcccaccgg agccaggagc cagcaccaca gacagaaaga ccgcccgcca ggactgctgc
     4621 ggccag
//
LOCUS       XM_032609948            2483 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrix remodeling associated 8 (MXRA8),
            transcript variant X1, mRNA.
ACCESSION   XM_032609948
VERSION     XM_032609948.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2483
                     /gene="MXRA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742381"
     CDS             251..1711
                     /gene="MXRA8"
                     /codon_start=1
                     /product="matrix remodeling-associated protein 8 isoform
                     X1"
                     /protein_id="XP_032465839.1"
                     /db_xref="GeneID:116742381"
                     /translation="MVWTQDRLHDRQRVVHWDLSGGPAGGPARRLMDMYSAGEQRVYE
                     PRDSGRLLLTPSAFQDGNFSLLIRAVEDTDEGLYTCNLHHHYCHLYESLAVRLEVTDD
                     PRAAGAHWDGEKEVLAVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHD
                     RADRLLDLYASGERRAYGPPFLRERVAVGADAFARGDFSLRIDPLEPADEGTYSCHLH
                     HHYCGLHERRVFHLKVTEPVARPPPRDSPGNGSSHSGAPGPGAGDPTLTRGRSVINVI
                     VPEGRAHFFQQLGYVLATLLLFILLLITVILATRQRRRGGYEYSDKKSKSKGKDVNMV
                     ESAVAAGDQALYRREDIRLGYKNNLLKERVELSHSPLPAKSIDLDKGELRCGGRPLPI
                     SELGCPLATHSEPQGTSQPCGQESPAASVPPKSLGSPDGSLPCFPRSRGAEGRHPPVP
                     LASRVQEGVLQIRRPRAPGWASSSASSCLSTPEDSS"
     misc_feature    <290..550
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    584..955
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
ORIGIN      
        1 ccgggctgtt tttctggaga gttagagcct gagtgagaca aagcgccggc gggccaggcg
       61 ggccaggcag gcgccatgga gctgcgggcc ctgggtcctg ctctggaaac ttgtgcttct
      121 gcagagctct tctgtccttc tgtcctcagg gccagccggg cccgcgaccc ccggcagctc
      181 cgtggtgtcc gagtctgcag tgagctgggc agccggcgcc cgggcggtgc tgcgctgtca
      241 gagcccgcgc atggtgtgga cgcaagaccg gctgcacgac cgccagcgcg tggtccactg
      301 ggacctcagc ggcggcccgg ccggcggccc cgcgcgccga ctcatggaca tgtactcggc
      361 gggcgagcag cgcgtgtacg agccgcgcga cagcggccgc ctgctgctga ccccctccgc
      421 cttccaggac ggcaacttct cgctgctcat ccgcgcggtg gaggacacag acgaggggct
      481 gtacacctgt aacctgcacc accattactg ccacctctac gagagcctgg ccgtgcgcct
      541 cgaggtcacc gacgaccccc gggccgccgg cgcgcactgg gacggcgaga aggaggtgct
      601 ggcggtggag cgcggcgcgc ccgcgttgct gacgtgcgtg aaccgcgcgc acgtgtggac
      661 cgaccggcac ctggaggagg cgcagcaggt ggtgcactgg gaccggcagc cgcccggggt
      721 gccgcacgac cgcgcggacc gcctgctcga cctgtacgcg tcgggcgagc gccgcgccta
      781 cgggccgccc ttcctgcggg agcgcgtggc ggtgggggcg gacgcctttg cgcgcggcga
      841 cttctcgctg cgcatcgacc cgctggagcc ggcagacgag ggcacctact cctgccacct
      901 gcaccaccac tactgcggcc tgcacgagcg ccgcgtcttc cacctgaagg tcaccgagcc
      961 cgtcgcccgg ccgcccccgc gggactcgcc gggcaacggt tccagccaca gcggcgcgcc
     1021 cggcccaggt gcaggagacc ccacgctgac gcgcggccgc agcgtcatca acgtcatcgt
     1081 ccccgagggc cgggcccact tcttccagca gctgggctac gtgctggcca cgctgctgct
     1141 cttcattctt ctgctcatca ccgtcatcct ggccacccga cagcggcgcc gcggaggcta
     1201 cgaatactcc gacaagaagt ccaagtccaa ggggaaggac gtgaacatgg tggagtctgc
     1261 tgtggctgcc ggcgaccagg ctctttacag gagggaggac atccgactag gttacaaaaa
     1321 caacctcctg aaggagaggg ttgagctgtc ccacagcccc ctgcccgcca agagcatcga
     1381 cttggacaaa ggtgagctga ggtgcggggg gagacccctg cccatctcag agctgggctg
     1441 tccccttgcc acccactcag agccccaagg caccagccag ccctgcgggc aggagtcccc
     1501 tgccgcctca gtgcccccga agtccctggg cagccctgat ggtagtctgc cctgtttccc
     1561 ccgcagcaga ggggcagagg gcagacaccc gcctgtcccc ttggcttcca gagttcagga
     1621 aggagtactg caaataaggc gaccccgggc tcctggctgg gccagcagct ctgccagctc
     1681 ttgtctgtcc accccggaag actcttcctg acccccacgc agctcgcctg gccccccttc
     1741 cagcggctgg tcccgctgtc ctggaacttg gcctggactg gtgcagggtg aggctgcctc
     1801 cagacccctc ttgggggcca cctgatcctc atttgcgatc gtgggctccc taggactctg
     1861 ccggcactgc agccgggccc cttccgcagc cctcggccgg tgctcttccc tcctcgcacg
     1921 gccacgaccc tgctgatgtt caccagactc tcaggctctc ctggcctctg cccactgggg
     1981 gctgggagcc ccacctctgc agggagaggg ccgtgagggg gctcagtggg gattcttgga
     2041 gctggggtca gcctcaggcc tggcactccc accccttcct tgccccgtcc ttaggggagc
     2101 tgcctgccag gctgtcttgg gctcttcacg gtaacccgag gaccgcgcac tccaggcccg
     2161 gggctagtgt ccctctgcgc tgcctccggc ctcctggggc cccctctctg cttcccaccc
     2221 tgcttcggcc ccgtttccag caagctgcct tgacagtcac taggctccat gtgacttctg
     2281 agcctgactc ccttccctcg gcccctcctt gggctggagt ccaggctgag gcctcattgg
     2341 actgcgtttt ggctgaggac ggggggcggg ggggggggcg gtgaggatgg tctcagagtg
     2401 gccggtgctg ccactcctga caccccacat ttgctcatcc tggggaattg ctatcatctc
     2461 aataaagacc acatctgatt tta
//
LOCUS       XM_032609958            2474 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrix remodeling associated 8 (MXRA8),
            transcript variant X2, mRNA.
ACCESSION   XM_032609958
VERSION     XM_032609958.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2474
                     /gene="MXRA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 long SRA reads, 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742381"
     CDS             251..1702
                     /gene="MXRA8"
                     /codon_start=1
                     /product="matrix remodeling-associated protein 8 isoform
                     X2"
                     /protein_id="XP_032465849.1"
                     /db_xref="GeneID:116742381"
                     /translation="MVWTQDRLHDRQRVVHWDLSGGPAGGPARRLMDMYSAGEQRVYE
                     PRDSGRLLLTPSAFQDGNFSLLIRAVEDTDEGLYTCNLHHHYCHLYESLAVRLEVTDD
                     PRAAGAHWDGEKEVLAVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHD
                     RADRLLDLYASGERRAYGPPFLRERVAVGADAFARGDFSLRIDPLEPADEGTYSCHLH
                     HHYCGLHERRVFHLKVTEPVARPPPRDSPGNGSSHSGAPGPDPTLTRGRSVINVIVPE
                     GRAHFFQQLGYVLATLLLFILLLITVILATRQRRRGGYEYSDKKSKSKGKDVNMVESA
                     VAAGDQALYRREDIRLGYKNNLLKERVELSHSPLPAKSIDLDKGELRCGGRPLPISEL
                     GCPLATHSEPQGTSQPCGQESPAASVPPKSLGSPDGSLPCFPRSRGAEGRHPPVPLAS
                     RVQEGVLQIRRPRAPGWASSSASSCLSTPEDSS"
     misc_feature    <290..550
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    584..955
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
ORIGIN      
        1 ccgggctgtt tttctggaga gttagagcct gagtgagaca aagcgccggc gggccaggcg
       61 ggccaggcag gcgccatgga gctgcgggcc ctgggtcctg ctctggaaac ttgtgcttct
      121 gcagagctct tctgtccttc tgtcctcagg gccagccggg cccgcgaccc ccggcagctc
      181 cgtggtgtcc gagtctgcag tgagctgggc agccggcgcc cgggcggtgc tgcgctgtca
      241 gagcccgcgc atggtgtgga cgcaagaccg gctgcacgac cgccagcgcg tggtccactg
      301 ggacctcagc ggcggcccgg ccggcggccc cgcgcgccga ctcatggaca tgtactcggc
      361 gggcgagcag cgcgtgtacg agccgcgcga cagcggccgc ctgctgctga ccccctccgc
      421 cttccaggac ggcaacttct cgctgctcat ccgcgcggtg gaggacacag acgaggggct
      481 gtacacctgt aacctgcacc accattactg ccacctctac gagagcctgg ccgtgcgcct
      541 cgaggtcacc gacgaccccc gggccgccgg cgcgcactgg gacggcgaga aggaggtgct
      601 ggcggtggag cgcggcgcgc ccgcgttgct gacgtgcgtg aaccgcgcgc acgtgtggac
      661 cgaccggcac ctggaggagg cgcagcaggt ggtgcactgg gaccggcagc cgcccggggt
      721 gccgcacgac cgcgcggacc gcctgctcga cctgtacgcg tcgggcgagc gccgcgccta
      781 cgggccgccc ttcctgcggg agcgcgtggc ggtgggggcg gacgcctttg cgcgcggcga
      841 cttctcgctg cgcatcgacc cgctggagcc ggcagacgag ggcacctact cctgccacct
      901 gcaccaccac tactgcggcc tgcacgagcg ccgcgtcttc cacctgaagg tcaccgagcc
      961 cgtcgcccgg ccgcccccgc gggactcgcc gggcaacggt tccagccaca gcggcgcgcc
     1021 cggcccagac cccacgctga cgcgcggccg cagcgtcatc aacgtcatcg tccccgaggg
     1081 ccgggcccac ttcttccagc agctgggcta cgtgctggcc acgctgctgc tcttcattct
     1141 tctgctcatc accgtcatcc tggccacccg acagcggcgc cgcggaggct acgaatactc
     1201 cgacaagaag tccaagtcca aggggaagga cgtgaacatg gtggagtctg ctgtggctgc
     1261 cggcgaccag gctctttaca ggagggagga catccgacta ggttacaaaa acaacctcct
     1321 gaaggagagg gttgagctgt cccacagccc cctgcccgcc aagagcatcg acttggacaa
     1381 aggtgagctg aggtgcgggg ggagacccct gcccatctca gagctgggct gtccccttgc
     1441 cacccactca gagccccaag gcaccagcca gccctgcggg caggagtccc ctgccgcctc
     1501 agtgcccccg aagtccctgg gcagccctga tggtagtctg ccctgtttcc cccgcagcag
     1561 aggggcagag ggcagacacc cgcctgtccc cttggcttcc agagttcagg aaggagtact
     1621 gcaaataagg cgaccccggg ctcctggctg ggccagcagc tctgccagct cttgtctgtc
     1681 caccccggaa gactcttcct gacccccacg cagctcgcct ggcccccctt ccagcggctg
     1741 gtcccgctgt cctggaactt ggcctggact ggtgcagggt gaggctgcct ccagacccct
     1801 cttgggggcc acctgatcct catttgcgat cgtgggctcc ctaggactct gccggcactg
     1861 cagccgggcc ccttccgcag ccctcggccg gtgctcttcc ctcctcgcac ggccacgacc
     1921 ctgctgatgt tcaccagact ctcaggctct cctggcctct gcccactggg ggctgggagc
     1981 cccacctctg cagggagagg gccgtgaggg ggctcagtgg ggattcttgg agctggggtc
     2041 agcctcaggc ctggcactcc caccccttcc ttgccccgtc cttaggggag ctgcctgcca
     2101 ggctgtcttg ggctcttcac ggtaacccga ggaccgcgca ctccaggccc ggggctagtg
     2161 tccctctgcg ctgcctccgg cctcctgggg ccccctctct gcttcccacc ctgcttcggc
     2221 cccgtttcca gcaagctgcc ttgacagtca ctaggctcca tgtgacttct gagcctgact
     2281 cccttccctc ggcccctcct tgggctggag tccaggctga ggcctcattg gactgcgttt
     2341 tggctgagga cggggggcgg gggggggggc ggtgaggatg gtctcagagt ggccggtgct
     2401 gccactcctg acaccccaca tttgctcatc ctggggaatt gctatcatct caataaagac
     2461 cacatctgat ttta
//
LOCUS       XM_032609967            1780 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrix remodeling associated 8 (MXRA8),
            transcript variant X3, mRNA.
ACCESSION   XM_032609967
VERSION     XM_032609967.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1780
                     /gene="MXRA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116742381"
     CDS             251..1681
                     /gene="MXRA8"
                     /codon_start=1
                     /product="matrix remodeling-associated protein 8 isoform
                     X3"
                     /protein_id="XP_032465858.1"
                     /db_xref="GeneID:116742381"
                     /translation="MVWTQDRLHDRQRVVHWDLSGGPAGGPARRLMDMYSAGEQRVYE
                     PRDSGRLLLTPSAFQDGNFSLLIRAVEDTDEGLYTCNLHHHYCHLYESLAVRLEVTDD
                     PRAAGAHWDGEKEVLAVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHD
                     RADRLLDLYASGERRAYGPPFLRERVAVGADAFARGDFSLRIDPLEPADEGTYSCHLH
                     HHYCGLHERRVFHLKVTEPVARPPPRDSPGNGSSHSGAPGPGAGDPTLTRGRSVINVI
                     VPEGRAHFFQQLGYVLATLLLFILLLITVILATRQRRRGGYEYSDKKSKSKGKDVNMV
                     ESAVAAGDQALYRREDIRLGYKNNLLKERVELSHSPLPAKSIDLDKGELPARLSWALH
                     GNPRTAHSRPGASVPLRCLRPPGAPSLLPTLLRPRFQQAALTVTRLHVTSEPDSLPSA
                     PPWAGVQAEASLDCVLAEDGGRGGGR"
     misc_feature    <290..550
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    584..955
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
ORIGIN      
        1 ccgggctgtt tttctggaga gttagagcct gagtgagaca aagcgccggc gggccaggcg
       61 ggccaggcag gcgccatgga gctgcgggcc ctgggtcctg ctctggaaac ttgtgcttct
      121 gcagagctct tctgtccttc tgtcctcagg gccagccggg cccgcgaccc ccggcagctc
      181 cgtggtgtcc gagtctgcag tgagctgggc agccggcgcc cgggcggtgc tgcgctgtca
      241 gagcccgcgc atggtgtgga cgcaagaccg gctgcacgac cgccagcgcg tggtccactg
      301 ggacctcagc ggcggcccgg ccggcggccc cgcgcgccga ctcatggaca tgtactcggc
      361 gggcgagcag cgcgtgtacg agccgcgcga cagcggccgc ctgctgctga ccccctccgc
      421 cttccaggac ggcaacttct cgctgctcat ccgcgcggtg gaggacacag acgaggggct
      481 gtacacctgt aacctgcacc accattactg ccacctctac gagagcctgg ccgtgcgcct
      541 cgaggtcacc gacgaccccc gggccgccgg cgcgcactgg gacggcgaga aggaggtgct
      601 ggcggtggag cgcggcgcgc ccgcgttgct gacgtgcgtg aaccgcgcgc acgtgtggac
      661 cgaccggcac ctggaggagg cgcagcaggt ggtgcactgg gaccggcagc cgcccggggt
      721 gccgcacgac cgcgcggacc gcctgctcga cctgtacgcg tcgggcgagc gccgcgccta
      781 cgggccgccc ttcctgcggg agcgcgtggc ggtgggggcg gacgcctttg cgcgcggcga
      841 cttctcgctg cgcatcgacc cgctggagcc ggcagacgag ggcacctact cctgccacct
      901 gcaccaccac tactgcggcc tgcacgagcg ccgcgtcttc cacctgaagg tcaccgagcc
      961 cgtcgcccgg ccgcccccgc gggactcgcc gggcaacggt tccagccaca gcggcgcgcc
     1021 cggcccaggt gcaggagacc ccacgctgac gcgcggccgc agcgtcatca acgtcatcgt
     1081 ccccgagggc cgggcccact tcttccagca gctgggctac gtgctggcca cgctgctgct
     1141 cttcattctt ctgctcatca ccgtcatcct ggccacccga cagcggcgcc gcggaggcta
     1201 cgaatactcc gacaagaagt ccaagtccaa ggggaaggac gtgaacatgg tggagtctgc
     1261 tgtggctgcc ggcgaccagg ctctttacag gagggaggac atccgactag gttacaaaaa
     1321 caacctcctg aaggagaggg ttgagctgtc ccacagcccc ctgcccgcca agagcatcga
     1381 cttggacaaa ggggagctgc ctgccaggct gtcttgggct cttcacggta acccgaggac
     1441 cgcgcactcc aggcccgggg ctagtgtccc tctgcgctgc ctccggcctc ctggggcccc
     1501 ctctctgctt cccaccctgc ttcggccccg tttccagcaa gctgccttga cagtcactag
     1561 gctccatgtg acttctgagc ctgactccct tccctcggcc cctccttggg ctggagtcca
     1621 ggctgaggcc tcattggact gcgttttggc tgaggacggg gggcgggggg gggggcggtg
     1681 aggatggtct cagagtggcc ggtgctgcca ctcctgacac cccacatttg ctcatcctgg
     1741 ggaattgcta tcatctcaat aaagaccaca tctgatttta
//
LOCUS       XM_032609977            2308 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrix remodeling associated 8 (MXRA8),
            transcript variant X4, mRNA.
ACCESSION   XM_032609977
VERSION     XM_032609977.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2308
                     /gene="MXRA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742381"
     CDS             251..1462
                     /gene="MXRA8"
                     /codon_start=1
                     /product="matrix remodeling-associated protein 8 isoform
                     X4"
                     /protein_id="XP_032465868.1"
                     /db_xref="GeneID:116742381"
                     /translation="MVWTQDRLHDRQRVVHWDLSGGPAGGPARRLMDMYSAGEQRVYE
                     PRDSGRLLLTPSAFQDGNFSLLIRAVEDTDEGLYTCNLHHHYCHLYESLAVRLEVTDD
                     PRAAGAHWDGEKEVLAVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHD
                     RADRLLDLYASGERRAYGPPFLRERVAVGADAFARGDFSLRIDPLEPADEGTYSCHLH
                     HHYCGLHERRVFHLKVTEPVARPPPRDSPGNGSSHSGAPGPGAGDPTLTRGRSVINVI
                     VPEGRAHFFQQLGYVLATLLLFILLLITVILATRQRRRGGYEYSDKKSKSKGKDVNMV
                     ESAVAAGDQALYRREDIRLGYKNNLLKERVELSHSPLPAKSIDLDKAEGQRADTRLSP
                     WLPEFRKEYCK"
     misc_feature    <290..550
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    584..955
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
ORIGIN      
        1 ccgggctgtt tttctggaga gttagagcct gagtgagaca aagcgccggc gggccaggcg
       61 ggccaggcag gcgccatgga gctgcgggcc ctgggtcctg ctctggaaac ttgtgcttct
      121 gcagagctct tctgtccttc tgtcctcagg gccagccggg cccgcgaccc ccggcagctc
      181 cgtggtgtcc gagtctgcag tgagctgggc agccggcgcc cgggcggtgc tgcgctgtca
      241 gagcccgcgc atggtgtgga cgcaagaccg gctgcacgac cgccagcgcg tggtccactg
      301 ggacctcagc ggcggcccgg ccggcggccc cgcgcgccga ctcatggaca tgtactcggc
      361 gggcgagcag cgcgtgtacg agccgcgcga cagcggccgc ctgctgctga ccccctccgc
      421 cttccaggac ggcaacttct cgctgctcat ccgcgcggtg gaggacacag acgaggggct
      481 gtacacctgt aacctgcacc accattactg ccacctctac gagagcctgg ccgtgcgcct
      541 cgaggtcacc gacgaccccc gggccgccgg cgcgcactgg gacggcgaga aggaggtgct
      601 ggcggtggag cgcggcgcgc ccgcgttgct gacgtgcgtg aaccgcgcgc acgtgtggac
      661 cgaccggcac ctggaggagg cgcagcaggt ggtgcactgg gaccggcagc cgcccggggt
      721 gccgcacgac cgcgcggacc gcctgctcga cctgtacgcg tcgggcgagc gccgcgccta
      781 cgggccgccc ttcctgcggg agcgcgtggc ggtgggggcg gacgcctttg cgcgcggcga
      841 cttctcgctg cgcatcgacc cgctggagcc ggcagacgag ggcacctact cctgccacct
      901 gcaccaccac tactgcggcc tgcacgagcg ccgcgtcttc cacctgaagg tcaccgagcc
      961 cgtcgcccgg ccgcccccgc gggactcgcc gggcaacggt tccagccaca gcggcgcgcc
     1021 cggcccaggt gcaggagacc ccacgctgac gcgcggccgc agcgtcatca acgtcatcgt
     1081 ccccgagggc cgggcccact tcttccagca gctgggctac gtgctggcca cgctgctgct
     1141 cttcattctt ctgctcatca ccgtcatcct ggccacccga cagcggcgcc gcggaggcta
     1201 cgaatactcc gacaagaagt ccaagtccaa ggggaaggac gtgaacatgg tggagtctgc
     1261 tgtggctgcc ggcgaccagg ctctttacag gagggaggac atccgactag gttacaaaaa
     1321 caacctcctg aaggagaggg ttgagctgtc ccacagcccc ctgcccgcca agagcatcga
     1381 cttggacaaa gcagaggggc agagggcaga cacccgcctg tccccttggc ttccagagtt
     1441 caggaaggag tactgcaaat aaggcgaccc cgggctcctg gctgggccag cagctctgcc
     1501 agctcttgtc tgtccacccc ggaagactct tcctgacccc cacgcagctc gcctggcccc
     1561 ccttccagcg gctggtcccg ctgtcctgga acttggcctg gactggtgca gggtgaggct
     1621 gcctccagac ccctcttggg ggccacctga tcctcatttg cgatcgtggg ctccctagga
     1681 ctctgccggc actgcagccg ggccccttcc gcagccctcg gccggtgctc ttccctcctc
     1741 gcacggccac gaccctgctg atgttcacca gactctcagg ctctcctggc ctctgcccac
     1801 tgggggctgg gagccccacc tctgcaggga gagggccgtg agggggctca gtggggattc
     1861 ttggagctgg ggtcagcctc aggcctggca ctcccacccc ttccttgccc cgtccttagg
     1921 ggagctgcct gccaggctgt cttgggctct tcacggtaac ccgaggaccg cgcactccag
     1981 gcccggggct agtgtccctc tgcgctgcct ccggcctcct ggggccccct ctctgcttcc
     2041 caccctgctt cggccccgtt tccagcaagc tgccttgaca gtcactaggc tccatgtgac
     2101 ttctgagcct gactcccttc cctcggcccc tccttgggct ggagtccagg ctgaggcctc
     2161 attggactgc gttttggctg aggacggggg gcgggggggg gggcggtgag gatggtctca
     2221 gagtggccgg tgctgccact cctgacaccc cacatttgct catcctgggg aattgctatc
     2281 atctcaataa agaccacatc tgatttta
//
LOCUS       XM_032609988            2299 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrix remodeling associated 8 (MXRA8),
            transcript variant X5, mRNA.
ACCESSION   XM_032609988
VERSION     XM_032609988.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2299
                     /gene="MXRA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742381"
     CDS             251..1453
                     /gene="MXRA8"
                     /codon_start=1
                     /product="matrix remodeling-associated protein 8 isoform
                     X5"
                     /protein_id="XP_032465879.1"
                     /db_xref="GeneID:116742381"
                     /translation="MVWTQDRLHDRQRVVHWDLSGGPAGGPARRLMDMYSAGEQRVYE
                     PRDSGRLLLTPSAFQDGNFSLLIRAVEDTDEGLYTCNLHHHYCHLYESLAVRLEVTDD
                     PRAAGAHWDGEKEVLAVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHD
                     RADRLLDLYASGERRAYGPPFLRERVAVGADAFARGDFSLRIDPLEPADEGTYSCHLH
                     HHYCGLHERRVFHLKVTEPVARPPPRDSPGNGSSHSGAPGPDPTLTRGRSVINVIVPE
                     GRAHFFQQLGYVLATLLLFILLLITVILATRQRRRGGYEYSDKKSKSKGKDVNMVESA
                     VAAGDQALYRREDIRLGYKNNLLKERVELSHSPLPAKSIDLDKAEGQRADTRLSPWLP
                     EFRKEYCK"
     misc_feature    <290..550
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    584..955
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
ORIGIN      
        1 ccgggctgtt tttctggaga gttagagcct gagtgagaca aagcgccggc gggccaggcg
       61 ggccaggcag gcgccatgga gctgcgggcc ctgggtcctg ctctggaaac ttgtgcttct
      121 gcagagctct tctgtccttc tgtcctcagg gccagccggg cccgcgaccc ccggcagctc
      181 cgtggtgtcc gagtctgcag tgagctgggc agccggcgcc cgggcggtgc tgcgctgtca
      241 gagcccgcgc atggtgtgga cgcaagaccg gctgcacgac cgccagcgcg tggtccactg
      301 ggacctcagc ggcggcccgg ccggcggccc cgcgcgccga ctcatggaca tgtactcggc
      361 gggcgagcag cgcgtgtacg agccgcgcga cagcggccgc ctgctgctga ccccctccgc
      421 cttccaggac ggcaacttct cgctgctcat ccgcgcggtg gaggacacag acgaggggct
      481 gtacacctgt aacctgcacc accattactg ccacctctac gagagcctgg ccgtgcgcct
      541 cgaggtcacc gacgaccccc gggccgccgg cgcgcactgg gacggcgaga aggaggtgct
      601 ggcggtggag cgcggcgcgc ccgcgttgct gacgtgcgtg aaccgcgcgc acgtgtggac
      661 cgaccggcac ctggaggagg cgcagcaggt ggtgcactgg gaccggcagc cgcccggggt
      721 gccgcacgac cgcgcggacc gcctgctcga cctgtacgcg tcgggcgagc gccgcgccta
      781 cgggccgccc ttcctgcggg agcgcgtggc ggtgggggcg gacgcctttg cgcgcggcga
      841 cttctcgctg cgcatcgacc cgctggagcc ggcagacgag ggcacctact cctgccacct
      901 gcaccaccac tactgcggcc tgcacgagcg ccgcgtcttc cacctgaagg tcaccgagcc
      961 cgtcgcccgg ccgcccccgc gggactcgcc gggcaacggt tccagccaca gcggcgcgcc
     1021 cggcccagac cccacgctga cgcgcggccg cagcgtcatc aacgtcatcg tccccgaggg
     1081 ccgggcccac ttcttccagc agctgggcta cgtgctggcc acgctgctgc tcttcattct
     1141 tctgctcatc accgtcatcc tggccacccg acagcggcgc cgcggaggct acgaatactc
     1201 cgacaagaag tccaagtcca aggggaagga cgtgaacatg gtggagtctg ctgtggctgc
     1261 cggcgaccag gctctttaca ggagggagga catccgacta ggttacaaaa acaacctcct
     1321 gaaggagagg gttgagctgt cccacagccc cctgcccgcc aagagcatcg acttggacaa
     1381 agcagagggg cagagggcag acacccgcct gtccccttgg cttccagagt tcaggaagga
     1441 gtactgcaaa taaggcgacc ccgggctcct ggctgggcca gcagctctgc cagctcttgt
     1501 ctgtccaccc cggaagactc ttcctgaccc ccacgcagct cgcctggccc cccttccagc
     1561 ggctggtccc gctgtcctgg aacttggcct ggactggtgc agggtgaggc tgcctccaga
     1621 cccctcttgg gggccacctg atcctcattt gcgatcgtgg gctccctagg actctgccgg
     1681 cactgcagcc gggccccttc cgcagccctc ggccggtgct cttccctcct cgcacggcca
     1741 cgaccctgct gatgttcacc agactctcag gctctcctgg cctctgccca ctgggggctg
     1801 ggagccccac ctctgcaggg agagggccgt gagggggctc agtggggatt cttggagctg
     1861 gggtcagcct caggcctggc actcccaccc cttccttgcc ccgtccttag gggagctgcc
     1921 tgccaggctg tcttgggctc ttcacggtaa cccgaggacc gcgcactcca ggcccggggc
     1981 tagtgtccct ctgcgctgcc tccggcctcc tggggccccc tctctgcttc ccaccctgct
     2041 tcggccccgt ttccagcaag ctgccttgac agtcactagg ctccatgtga cttctgagcc
     2101 tgactccctt ccctcggccc ctccttgggc tggagtccag gctgaggcct cattggactg
     2161 cgttttggct gaggacgggg ggcggggggg ggggcggtga ggatggtctc agagtggccg
     2221 gtgctgccac tcctgacacc ccacatttgc tcatcctggg gaattgctat catctcaata
     2281 aagaccacat ctgatttta
//
LOCUS       XM_032609996            2263 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrix remodeling associated 8 (MXRA8),
            transcript variant X6, mRNA.
ACCESSION   XM_032609996
VERSION     XM_032609996.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2263
                     /gene="MXRA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742381"
     CDS             251..1417
                     /gene="MXRA8"
                     /codon_start=1
                     /product="matrix remodeling-associated protein 8 isoform
                     X6"
                     /protein_id="XP_032465887.1"
                     /db_xref="GeneID:116742381"
                     /translation="MVWTQDRLHDRQRVVHWDLSGGPAGGPARRLMDMYSAGEQRVYE
                     PRDSGRLLLTPSAFQDGNFSLLIRAVEDTDEGLYTCNLHHHYCHLYESLAVRLEVTDD
                     PRAAGAHWDGEKEVLAVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHD
                     RADRLLDLYASGERRAYGPPFLRERVAVGADAFARGDFSLRIDPLEPADEGTYSCHLH
                     HHYCGLHERRVFHLKVTEPVARPPPRDSPGNGSSHSGAPGPGAGDPTLTRGRSVINVI
                     VPEGRAHFFQQLGYVLATLLLFILLLITVILATRQRRRGGYEYSDKKSKSKGKDVNMV
                     ESAVAAGDQALYRREDIRLGYKNNLLKERVELSHSPLPAKSIDLDKEFRKEYCK"
     misc_feature    <290..550
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    584..955
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
ORIGIN      
        1 ccgggctgtt tttctggaga gttagagcct gagtgagaca aagcgccggc gggccaggcg
       61 ggccaggcag gcgccatgga gctgcgggcc ctgggtcctg ctctggaaac ttgtgcttct
      121 gcagagctct tctgtccttc tgtcctcagg gccagccggg cccgcgaccc ccggcagctc
      181 cgtggtgtcc gagtctgcag tgagctgggc agccggcgcc cgggcggtgc tgcgctgtca
      241 gagcccgcgc atggtgtgga cgcaagaccg gctgcacgac cgccagcgcg tggtccactg
      301 ggacctcagc ggcggcccgg ccggcggccc cgcgcgccga ctcatggaca tgtactcggc
      361 gggcgagcag cgcgtgtacg agccgcgcga cagcggccgc ctgctgctga ccccctccgc
      421 cttccaggac ggcaacttct cgctgctcat ccgcgcggtg gaggacacag acgaggggct
      481 gtacacctgt aacctgcacc accattactg ccacctctac gagagcctgg ccgtgcgcct
      541 cgaggtcacc gacgaccccc gggccgccgg cgcgcactgg gacggcgaga aggaggtgct
      601 ggcggtggag cgcggcgcgc ccgcgttgct gacgtgcgtg aaccgcgcgc acgtgtggac
      661 cgaccggcac ctggaggagg cgcagcaggt ggtgcactgg gaccggcagc cgcccggggt
      721 gccgcacgac cgcgcggacc gcctgctcga cctgtacgcg tcgggcgagc gccgcgccta
      781 cgggccgccc ttcctgcggg agcgcgtggc ggtgggggcg gacgcctttg cgcgcggcga
      841 cttctcgctg cgcatcgacc cgctggagcc ggcagacgag ggcacctact cctgccacct
      901 gcaccaccac tactgcggcc tgcacgagcg ccgcgtcttc cacctgaagg tcaccgagcc
      961 cgtcgcccgg ccgcccccgc gggactcgcc gggcaacggt tccagccaca gcggcgcgcc
     1021 cggcccaggt gcaggagacc ccacgctgac gcgcggccgc agcgtcatca acgtcatcgt
     1081 ccccgagggc cgggcccact tcttccagca gctgggctac gtgctggcca cgctgctgct
     1141 cttcattctt ctgctcatca ccgtcatcct ggccacccga cagcggcgcc gcggaggcta
     1201 cgaatactcc gacaagaagt ccaagtccaa ggggaaggac gtgaacatgg tggagtctgc
     1261 tgtggctgcc ggcgaccagg ctctttacag gagggaggac atccgactag gttacaaaaa
     1321 caacctcctg aaggagaggg ttgagctgtc ccacagcccc ctgcccgcca agagcatcga
     1381 cttggacaaa gagttcagga aggagtactg caaataaggc gaccccgggc tcctggctgg
     1441 gccagcagct ctgccagctc ttgtctgtcc accccggaag actcttcctg acccccacgc
     1501 agctcgcctg gccccccttc cagcggctgg tcccgctgtc ctggaacttg gcctggactg
     1561 gtgcagggtg aggctgcctc cagacccctc ttgggggcca cctgatcctc atttgcgatc
     1621 gtgggctccc taggactctg ccggcactgc agccgggccc cttccgcagc cctcggccgg
     1681 tgctcttccc tcctcgcacg gccacgaccc tgctgatgtt caccagactc tcaggctctc
     1741 ctggcctctg cccactgggg gctgggagcc ccacctctgc agggagaggg ccgtgagggg
     1801 gctcagtggg gattcttgga gctggggtca gcctcaggcc tggcactccc accccttcct
     1861 tgccccgtcc ttaggggagc tgcctgccag gctgtcttgg gctcttcacg gtaacccgag
     1921 gaccgcgcac tccaggcccg gggctagtgt ccctctgcgc tgcctccggc ctcctggggc
     1981 cccctctctg cttcccaccc tgcttcggcc ccgtttccag caagctgcct tgacagtcac
     2041 taggctccat gtgacttctg agcctgactc ccttccctcg gcccctcctt gggctggagt
     2101 ccaggctgag gcctcattgg actgcgtttt ggctgaggac ggggggcggg ggggggggcg
     2161 gtgaggatgg tctcagagtg gccggtgctg ccactcctga caccccacat ttgctcatcc
     2221 tggggaattg ctatcatctc aataaagacc acatctgatt tta
//
LOCUS       XM_032610006            2068 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus matrix remodeling associated 8 (MXRA8),
            transcript variant X7, mRNA.
ACCESSION   XM_032610006
VERSION     XM_032610006.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2068
                     /gene="MXRA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 8 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742381"
     CDS             251..1408
                     /gene="MXRA8"
                     /codon_start=1
                     /product="matrix remodeling-associated protein 8 isoform
                     X7"
                     /protein_id="XP_032465897.1"
                     /db_xref="GeneID:116742381"
                     /translation="MVWTQDRLHDRQRVVHWDLSGGPAGGPARRLMDMYSAGEQRVYE
                     PRDSGRLLLTPSAFQDGNFSLLIRAVEDTDEGLYTCNLHHHYCHLYESLAVRLEVTDD
                     PRAAGAHWDGEKEVLAVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHD
                     RADRLLDLYASGERRAYGPPFLRERVAVGADAFARGDFSLRIDPLEPADEGTYSCHLH
                     HHYCGLHERRVFHLKVTEPVARPPPRDSPGNGSSHSGAPGPDPTLTRGRSVINVIVPE
                     GRAHFFQQLGYVLATLLLFILLLITVILATRQRRRGGYEYSDKKSKSKGKDVNMVESA
                     VAAGDQALYRREDIRLGYKNNLLKERVELSHSPLPAKSIDLDKEFRKEYCK"
     misc_feature    <290..550
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    584..955
                     /gene="MXRA8"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
ORIGIN      
        1 ccgggctgtt tttctggaga gttagagcct gagtgagaca aagcgccggc gggccaggcg
       61 ggccaggcag gcgccatgga gctgcgggcc ctgggtcctg ctctggaaac ttgtgcttct
      121 gcagagctct tctgtccttc tgtcctcagg gccagccggg cccgcgaccc ccggcagctc
      181 cgtggtgtcc gagtctgcag tgagctgggc agccggcgcc cgggcggtgc tgcgctgtca
      241 gagcccgcgc atggtgtgga cgcaagaccg gctgcacgac cgccagcgcg tggtccactg
      301 ggacctcagc ggcggcccgg ccggcggccc cgcgcgccga ctcatggaca tgtactcggc
      361 gggcgagcag cgcgtgtacg agccgcgcga cagcggccgc ctgctgctga ccccctccgc
      421 cttccaggac ggcaacttct cgctgctcat ccgcgcggtg gaggacacag acgaggggct
      481 gtacacctgt aacctgcacc accattactg ccacctctac gagagcctgg ccgtgcgcct
      541 cgaggtcacc gacgaccccc gggccgccgg cgcgcactgg gacggcgaga aggaggtgct
      601 ggcggtggag cgcggcgcgc ccgcgttgct gacgtgcgtg aaccgcgcgc acgtgtggac
      661 cgaccggcac ctggaggagg cgcagcaggt ggtgcactgg gaccggcagc cgcccggggt
      721 gccgcacgac cgcgcggacc gcctgctcga cctgtacgcg tcgggcgagc gccgcgccta
      781 cgggccgccc ttcctgcggg agcgcgtggc ggtgggggcg gacgcctttg cgcgcggcga
      841 cttctcgctg cgcatcgacc cgctggagcc ggcagacgag ggcacctact cctgccacct
      901 gcaccaccac tactgcggcc tgcacgagcg ccgcgtcttc cacctgaagg tcaccgagcc
      961 cgtcgcccgg ccgcccccgc gggactcgcc gggcaacggt tccagccaca gcggcgcgcc
     1021 cggcccagac cccacgctga cgcgcggccg cagcgtcatc aacgtcatcg tccccgaggg
     1081 ccgggcccac ttcttccagc agctgggcta cgtgctggcc acgctgctgc tcttcattct
     1141 tctgctcatc accgtcatcc tggccacccg acagcggcgc cgcggaggct acgaatactc
     1201 cgacaagaag tccaagtcca aggggaagga cgtgaacatg gtggagtctg ctgtggctgc
     1261 cggcgaccag gctctttaca ggagggagga catccgacta ggttacaaaa acaacctcct
     1321 gaaggagagg gttgagctgt cccacagccc cctgcccgcc aagagcatcg acttggacaa
     1381 agagttcagg aaggagtact gcaaataagg cgaccccggg ctcctggctg ggccagcagc
     1441 tctgccagct cttgtctgtc caccccggaa gactcttcct gacccccacg cagctcgcct
     1501 ggcccccctt ccagcggctg gtcccgctgt cctggaactt ggcctggact ggtgcagggt
     1561 gaggctgcct ccagacccct cttgggggcc acctgatcct catttgcgat cgtgggctcc
     1621 ctaggactct gccggcactg cagccgggcc ccttccgcag ccctcggccg gtgctcttcc
     1681 ctcctcgcac ggccacgacc ctgctgatgt tcaccagact ctcaggctct cctggcctct
     1741 gcccactggg ggctgggagc cccacctctg cagggagagg gccgtgaggg ggctcagtgg
     1801 ggattcttgg agctggggtc agcctcaggc ctggcactcc caccccttcc ttgccccgtc
     1861 cttaggggag ctgcctgcca ggctgtcttg ggctcttcac ggtaacccga ggaccgcgca
     1921 ctccaggccc ggggctagtg tccctctgcg ctgcctccgg cctcctgggg ccccctctct
     1981 gcttcccacc ctgcttcggc cccgtttcca gcaagctgcc ttgacagtca ctaggctcca
     2041 tgtgacttct gagcctgact cccttccc
//
LOCUS       XM_032610018            2464 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA fragmentation factor subunit alpha
            (DFFA), transcript variant X1, mRNA.
ACCESSION   XM_032610018
VERSION     XM_032610018.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2464
                     /gene="DFFA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 92% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116742403"
     CDS             54..1208
                     /gene="DFFA"
                     /codon_start=1
                     /product="DNA fragmentation factor subunit alpha isoform
                     X1"
                     /protein_id="XP_032465909.1"
                     /db_xref="GeneID:116742403"
                     /translation="MTEVVGGPSVPEPSEIRALKQCLLCRNHSREQHGVAASCLEELR
                     SKACDILAIDKSLAPVTLVLAEDGTIVDDDDYFLCLPANTKFVALAGNEKWAYNNSDG
                     GTAWITQESFDGDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQFYAQGCNGEQAR
                     HSPCSNGTQVLVEGGRQNKQHVRQGSVPRVAGRLLEGGDLVMLIDVPCSELAQELSQS
                     RVAVQGLQNTLQQVLDQREEARQSKQLLELYLRALEKEGSILLKQQESKAGVGDERDA
                     VDTGIGESSSEIALTSQILNALKEKPAPELSLSSKDLELVAKEDPKALAVALNWDIKK
                     TEAVQQTCNQELSLRLQQVQSLYSLRSISARRSSLPGEVQNPKQARRDPT"
     misc_feature    108..344
                     /gene="DFFA"
                     /note="CIDE_N domain, found at the N-terminus of the CIDE
                     (cell death-inducing DFF45-like effector) proteins, as
                     well as CAD nuclease (caspase-activated DNase/DNA
                     fragmentation factor, DFF40) and its inhibitor,
                     ICAD(DFF45). These proteins are associated with...;
                     Region: CIDE_N; cl02541"
                     /db_xref="CDD:470607"
     misc_feature    order(120..122,147..152,156..161,189..191,201..203,
                     252..254,258..263,276..281,336..338,342..344)
                     /gene="DFFA"
                     /note="putative heterodimer interaction sites [polypeptide
                     binding]; other site"
                     /db_xref="CDD:119367"
     misc_feature    354..1004
                     /gene="DFFA"
                     /note="DNA Fragmentation factor 45kDa, C terminal domain;
                     Region: DFF-C; pfam09033"
                     /db_xref="CDD:462661"
ORIGIN      
        1 ctcccgcgcc caaccccctg acgtccccgt gttggtcagg tcagaccctg aagatgacgg
       61 aggtggtcgg gggacccagt gttccagaac ccagcgagat ccgggctcta aagcagtgtc
      121 tcctgtgccg caaccacagc cgggaacagc acggcgtggc ggcctcctgc ctcgaggagc
      181 tgaggagcaa ggcttgtgac attctggcca ttgacaagtc cctggcacca gtcaccctgg
      241 tcctggcaga ggatggcacc atagtggatg atgacgatta cttcctgtgt cttcctgcca
      301 atactaagtt tgtggcactg gctgggaatg agaagtgggc ttacaacaat tcagatggag
      361 gtacagcttg gattacccaa gagtcctttg acggagatga aacagacagc ggggcagggt
      421 tgaagtggaa gaatgtggcc aggcagctga aagaagacct gtccagcatc atcctcctgt
      481 ccgaggagga cctccaattc tatgcacagg ggtgcaatgg tgaacaagcc agacacagtc
      541 cctgctctaa tggaactcaa gtcctggtgg aaggaggcag acaaaataag cagcatgtca
      601 gacagggcag tgtgccaaga gtggcgggaa ggctcctgga aggaggcgac cttgtgatgc
      661 ttattgatgt cccatgttca gagctggctc aggaactcag ccaaagtcgt gtcgcagtcc
      721 aggggctcca gaacaccctc cagcaggtcc ttgaccagag agaggaagcc cgtcagtcca
      781 agcagctctt ggagctttac ctccgggctt tggagaagga gggcagcatc ctgttgaagc
      841 agcaagagtc caaagctggc gtcggtgatg agagggatgc agttgacacg ggtattggag
      901 agagctcctc cgaaattgca cttacgagcc agatccttaa tgcgctgaag gagaaacccg
      961 cgccagagct gagtttgtct agtaaagatt tggagttggt tgccaaggag gaccctaaag
     1021 cactggctgt tgctttgaac tgggacataa agaagacgga agctgttcaa cagacctgta
     1081 atcaggaact tagcctgcgc ctccagcagg tacagagctt gtattctctg aggagcattt
     1141 cagcgaggag gagttcgctg cctggagaag tgcagaatcc caaacaagcc agacgagacc
     1201 ccacatagcc ggcagccaga aacatgccaa agaaaaccag tgtgaccagt gtcagtgtca
     1261 gtaaatacct tcagcctaac ctttgtagct ccctacatac tcctctaccc cctgccttcg
     1321 agaatgttct cctggaacag gctggaagac aggcttcatg ccctttccgg aaaagctatt
     1381 ccagatctcc acatgggctc tctgacctat tttgaaccat agagctgcac cagcagtatc
     1441 ccacctcctc taactgcaaa ttcttatgtt ctctaacagt agttgtaaag ggcagggaaa
     1501 agaaattgtc atatttcaga cccactattt ttttttttta cttttttttc ttctacatca
     1561 gataaatggt atatctcttt caagattcaa tcatctgttg aactatgcag ccatcatagt
     1621 aatagaccca ctattcttat tctaaagatg gaactgcaga attttaaaca caaaataaca
     1681 atagagaaga tgacatatca gagtgttgat gatggccaca aacttgtttc tcaagttaag
     1741 gaattttttc gtttgtttta aaggcacgta ttaagtttgc agaccatagg gacatatgga
     1801 gagtaattca ccatttctaa tagctaattc agtattgtga aattatatgc attaccacag
     1861 tgaaactttt cagttttcta atgtgcttta tcagcagggg gtataaaacg gtcattaaat
     1921 cagtctccat gaggtatgac tctaggtctc tctgggtgca aagcagagac ttctggttta
     1981 tatccccgtt tctgtacaag cttgttcttc gggttttgta atctacaatg cagtctctct
     2041 tgcagggaaa agataattag ttactgactt atttgactta ctttttaagc atacttagag
     2101 gaaaacagaa tgcaattaac cgatacattg gctaattatt aagtaaagaa atataacgat
     2161 aagtaagtcc tagggcgagg gagaggtaca gaaaacaaac agaacaaaaa gaactgtttc
     2221 cttctgctgt gcccttcctc aaggaggact cagacctacg cagcgtgctc ttactaatgc
     2281 cttatgtatt tggttctcat tagccccaat atttcttttt taatagcata ttttataatg
     2341 ccttcttaat tatccttaaa tgaaagccag agctgataac ctacctatgt gcataccttc
     2401 atcaacataa tacccccaaa tgtagtattt cagaagaaat aaaggaaaat aatttccaac
     2461 aaaa
//
LOCUS       XM_032610029            2305 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA fragmentation factor subunit alpha
            (DFFA), transcript variant X2, mRNA.
ACCESSION   XM_032610029
VERSION     XM_032610029.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2305
                     /gene="DFFA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742403"
     CDS             54..1049
                     /gene="DFFA"
                     /codon_start=1
                     /product="DNA fragmentation factor subunit alpha isoform
                     X2"
                     /protein_id="XP_032465920.1"
                     /db_xref="GeneID:116742403"
                     /translation="MTEVVGGPSVPEPSEIRALKQCLLCRNHSREQHGVAASCLEELR
                     SKACDILAIDKSLAPVTLVLAEDGTIVDDDDYFLCLPANTKFVALAGNEKWAYNNSDG
                     GTAWITQESFDGDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLIDVPCSELAQ
                     ELSQSRVAVQGLQNTLQQVLDQREEARQSKQLLELYLRALEKEGSILLKQQESKAGVG
                     DERDAVDTGIGESSSEIALTSQILNALKEKPAPELSLSSKDLELVAKEDPKALAVALN
                     WDIKKTEAVQQTCNQELSLRLQQVQSLYSLRSISARRSSLPGEVQNPKQARRDPT"
     misc_feature    108..344
                     /gene="DFFA"
                     /note="CIDE_N domain, found at the N-terminus of the CIDE
                     (cell death-inducing DFF45-like effector) proteins, as
                     well as CAD nuclease (caspase-activated DNase/DNA
                     fragmentation factor, DFF40) and its inhibitor,
                     ICAD(DFF45). These proteins are associated with...;
                     Region: CIDE_N; cl02541"
                     /db_xref="CDD:470607"
     misc_feature    order(120..122,147..152,156..161,189..191,201..203,
                     252..254,258..263,276..281,336..338,342..344)
                     /gene="DFFA"
                     /note="putative heterodimer interaction sites [polypeptide
                     binding]; other site"
                     /db_xref="CDD:119367"
     misc_feature    354..845
                     /gene="DFFA"
                     /note="DNA Fragmentation factor 45kDa, C terminal domain;
                     Region: DFF-C; pfam09033"
                     /db_xref="CDD:462661"
ORIGIN      
        1 ctcccgcgcc caaccccctg acgtccccgt gttggtcagg tcagaccctg aagatgacgg
       61 aggtggtcgg gggacccagt gttccagaac ccagcgagat ccgggctcta aagcagtgtc
      121 tcctgtgccg caaccacagc cgggaacagc acggcgtggc ggcctcctgc ctcgaggagc
      181 tgaggagcaa ggcttgtgac attctggcca ttgacaagtc cctggcacca gtcaccctgg
      241 tcctggcaga ggatggcacc atagtggatg atgacgatta cttcctgtgt cttcctgcca
      301 atactaagtt tgtggcactg gctgggaatg agaagtgggc ttacaacaat tcagatggag
      361 gtacagcttg gattacccaa gagtcctttg acggagatga aacagacagc ggggcagggt
      421 tgaagtggaa gaatgtggcc aggcagctga aagaagacct gtccagcatc atcctcctgt
      481 ccgaggagga cctccaaatg cttattgatg tcccatgttc agagctggct caggaactca
      541 gccaaagtcg tgtcgcagtc caggggctcc agaacaccct ccagcaggtc cttgaccaga
      601 gagaggaagc ccgtcagtcc aagcagctct tggagcttta cctccgggct ttggagaagg
      661 agggcagcat cctgttgaag cagcaagagt ccaaagctgg cgtcggtgat gagagggatg
      721 cagttgacac gggtattgga gagagctcct ccgaaattgc acttacgagc cagatcctta
      781 atgcgctgaa ggagaaaccc gcgccagagc tgagtttgtc tagtaaagat ttggagttgg
      841 ttgccaagga ggaccctaaa gcactggctg ttgctttgaa ctgggacata aagaagacgg
      901 aagctgttca acagacctgt aatcaggaac ttagcctgcg cctccagcag gtacagagct
      961 tgtattctct gaggagcatt tcagcgagga ggagttcgct gcctggagaa gtgcagaatc
     1021 ccaaacaagc cagacgagac cccacatagc cggcagccag aaacatgcca aagaaaacca
     1081 gtgtgaccag tgtcagtgtc agtaaatacc ttcagcctaa cctttgtagc tccctacata
     1141 ctcctctacc ccctgccttc gagaatgttc tcctggaaca ggctggaaga caggcttcat
     1201 gccctttccg gaaaagctat tccagatctc cacatgggct ctctgaccta ttttgaacca
     1261 tagagctgca ccagcagtat cccacctcct ctaactgcaa attcttatgt tctctaacag
     1321 tagttgtaaa gggcagggaa aagaaattgt catatttcag acccactatt tttttttttt
     1381 actttttttt cttctacatc agataaatgg tatatctctt tcaagattca atcatctgtt
     1441 gaactatgca gccatcatag taatagaccc actattctta ttctaaagat ggaactgcag
     1501 aattttaaac acaaaataac aatagagaag atgacatatc agagtgttga tgatggccac
     1561 aaacttgttt ctcaagttaa ggaatttttt cgtttgtttt aaaggcacgt attaagtttg
     1621 cagaccatag ggacatatgg agagtaattc accatttcta atagctaatt cagtattgtg
     1681 aaattatatg cattaccaca gtgaaacttt tcagttttct aatgtgcttt atcagcaggg
     1741 ggtataaaac ggtcattaaa tcagtctcca tgaggtatga ctctaggtct ctctgggtgc
     1801 aaagcagaga cttctggttt atatccccgt ttctgtacaa gcttgttctt cgggttttgt
     1861 aatctacaat gcagtctctc ttgcagggaa aagataatta gttactgact tatttgactt
     1921 actttttaag catacttaga ggaaaacaga atgcaattaa ccgatacatt ggctaattat
     1981 taagtaaaga aatataacga taagtaagtc ctagggcgag ggagaggtac agaaaacaaa
     2041 cagaacaaaa agaactgttt ccttctgctg tgcccttcct caaggaggac tcagacctac
     2101 gcagcgtgct cttactaatg ccttatgtat ttggttctca ttagccccaa tatttctttt
     2161 ttaatagcat attttataat gccttcttaa ttatccttaa atgaaagcca gagctgataa
     2221 cctacctatg tgcatacctt catcaacata atacccccaa atgtagtatt tcagaagaaa
     2281 taaaggaaaa taatttccaa caaaa
//
LOCUS       XM_032610037            2143 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA fragmentation factor subunit alpha
            (DFFA), transcript variant X3, mRNA.
ACCESSION   XM_032610037
VERSION     XM_032610037.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2143
                     /gene="DFFA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116742403"
     CDS             54..887
                     /gene="DFFA"
                     /codon_start=1
                     /product="DNA fragmentation factor subunit alpha isoform
                     X3"
                     /protein_id="XP_032465928.1"
                     /db_xref="GeneID:116742403"
                     /translation="MTEVVGGPSVPEPSEIRALKQCLLCRNHSREQHGVAASCLEELR
                     SKDGGTAWITQESFDGDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLIDVPCS
                     ELAQELSQSRVAVQGLQNTLQQVLDQREEARQSKQLLELYLRALEKEGSILLKQQESK
                     AGVGDERDAVDTGIGESSSEIALTSQILNALKEKPAPELSLSSKDLELVAKEDPKALA
                     VALNWDIKKTEAVQQTCNQELSLRLQQVQSLYSLRSISARRSSLPGEVQNPKQARRDP
                     T"
     misc_feature    108..>191
                     /gene="DFFA"
                     /note="CIDE_N domain, found at the N-terminus of the CIDE
                     (cell death-inducing DFF45-like effector) proteins, as
                     well as CAD nuclease (caspase-activated DNase/DNA
                     fragmentation factor, DFF40) and its inhibitor,
                     ICAD(DFF45). These proteins are associated with...;
                     Region: CIDE_N; cl02541"
                     /db_xref="CDD:470607"
     misc_feature    192..683
                     /gene="DFFA"
                     /note="DNA Fragmentation factor 45kDa, C terminal domain;
                     Region: DFF-C; pfam09033"
                     /db_xref="CDD:462661"
ORIGIN      
        1 ctcccgcgcc caaccccctg acgtccccgt gttggtcagg tcagaccctg aagatgacgg
       61 aggtggtcgg gggacccagt gttccagaac ccagcgagat ccgggctcta aagcagtgtc
      121 tcctgtgccg caaccacagc cgggaacagc acggcgtggc ggcctcctgc ctcgaggagc
      181 tgaggagcaa ggatggaggt acagcttgga ttacccaaga gtcctttgac ggagatgaaa
      241 cagacagcgg ggcagggttg aagtggaaga atgtggccag gcagctgaaa gaagacctgt
      301 ccagcatcat cctcctgtcc gaggaggacc tccaaatgct tattgatgtc ccatgttcag
      361 agctggctca ggaactcagc caaagtcgtg tcgcagtcca ggggctccag aacaccctcc
      421 agcaggtcct tgaccagaga gaggaagccc gtcagtccaa gcagctcttg gagctttacc
      481 tccgggcttt ggagaaggag ggcagcatcc tgttgaagca gcaagagtcc aaagctggcg
      541 tcggtgatga gagggatgca gttgacacgg gtattggaga gagctcctcc gaaattgcac
      601 ttacgagcca gatccttaat gcgctgaagg agaaacccgc gccagagctg agtttgtcta
      661 gtaaagattt ggagttggtt gccaaggagg accctaaagc actggctgtt gctttgaact
      721 gggacataaa gaagacggaa gctgttcaac agacctgtaa tcaggaactt agcctgcgcc
      781 tccagcaggt acagagcttg tattctctga ggagcatttc agcgaggagg agttcgctgc
      841 ctggagaagt gcagaatccc aaacaagcca gacgagaccc cacatagccg gcagccagaa
      901 acatgccaaa gaaaaccagt gtgaccagtg tcagtgtcag taaatacctt cagcctaacc
      961 tttgtagctc cctacatact cctctacccc ctgccttcga gaatgttctc ctggaacagg
     1021 ctggaagaca ggcttcatgc cctttccgga aaagctattc cagatctcca catgggctct
     1081 ctgacctatt ttgaaccata gagctgcacc agcagtatcc cacctcctct aactgcaaat
     1141 tcttatgttc tctaacagta gttgtaaagg gcagggaaaa gaaattgtca tatttcagac
     1201 ccactatttt ttttttttac ttttttttct tctacatcag ataaatggta tatctctttc
     1261 aagattcaat catctgttga actatgcagc catcatagta atagacccac tattcttatt
     1321 ctaaagatgg aactgcagaa ttttaaacac aaaataacaa tagagaagat gacatatcag
     1381 agtgttgatg atggccacaa acttgtttct caagttaagg aattttttcg tttgttttaa
     1441 aggcacgtat taagtttgca gaccataggg acatatggag agtaattcac catttctaat
     1501 agctaattca gtattgtgaa attatatgca ttaccacagt gaaacttttc agttttctaa
     1561 tgtgctttat cagcaggggg tataaaacgg tcattaaatc agtctccatg aggtatgact
     1621 ctaggtctct ctgggtgcaa agcagagact tctggtttat atccccgttt ctgtacaagc
     1681 ttgttcttcg ggttttgtaa tctacaatgc agtctctctt gcagggaaaa gataattagt
     1741 tactgactta tttgacttac tttttaagca tacttagagg aaaacagaat gcaattaacc
     1801 gatacattgg ctaattatta agtaaagaaa tataacgata agtaagtcct agggcgaggg
     1861 agaggtacag aaaacaaaca gaacaaaaag aactgtttcc ttctgctgtg cccttcctca
     1921 aggaggactc agacctacgc agcgtgctct tactaatgcc ttatgtattt ggttctcatt
     1981 agccccaata tttctttttt aatagcatat tttataatgc cttcttaatt atccttaaat
     2041 gaaagccaga gctgataacc tacctatgtg cataccttca tcaacataat acccccaaat
     2101 gtagtatttc agaagaaata aaggaaaata atttccaaca aaa
//
LOCUS       XM_032610047            1575 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity phosphatase 12 (DUSP12),
            mRNA.
ACCESSION   XM_032610047
VERSION     XM_032610047.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1575
                     /gene="DUSP12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742416"
     CDS             280..1341
                     /gene="DUSP12"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 12"
                     /protein_id="XP_032465938.1"
                     /db_xref="GeneID:116742416"
                     /translation="MVGPSSVRPPGAAMLEPQYGSHGCERTAGSRTRASSAEHMLEVR
                     PGLFLGGAAAVAEPDHLREAGITAVLTVDSEETDFNTGAGVEGLRSLFVPALDKPETD
                     LLSHLDRCVAFIGQARAEGRAVLVHCHAGVSRSVAVMTAFMMKTDQLTFEKAYENLKT
                     IKRGAKMNEGFEWQLKLYQAMGCEVDTSSAIYKQYRLQKVTEKYPELQNLPQELFAVD
                     PSAITQGLKDGVLYKCRKCRRSLFRSSSILDHNEGSGPIAFAHKRMTPSFMLTTGSQA
                     QCTSYFIEPVQWMESTLLGVMDGQLLCPKCNAKLGSFNWYGEQCSCGRWITPAFQIHK
                     NRVDEMKMLPVWGSQTRKI"
     misc_feature    397..837
                     /gene="DUSP12"
                     /note="dual specificity phosphatase domain of dual
                     specificity protein phosphatase 12 and similar proteins;
                     Region: DSP_DUSP12; cd14520"
                     /db_xref="CDD:350370"
ORIGIN      
        1 tccattttct gctcctgcag aaaatcaaga aaatctcagc actaagagcc tgagaaaccc
       61 tgtattagcg ttagtttacc accaagttgg aggagccggg tagagacaag ggtccagaag
      121 cggttttgaa cggggtttag ctccgcccca gccgcagtaa cgtcaccttc cgccagtaaa
      181 tccacagtcc cgcggtcgac gtggtcccaa gagggagggg cggcgcaact caggccggct
      241 ggtcctagat gaaggacgtt ctagccgacc ccctactcga tggtagggcc ctcctcagtc
      301 cggcctccgg gcgccgccat gttggagcct cagtacggga gccatggatg cgaacgcacg
      361 gccggcagcc ggacccgggc cagctccgct gagcacatgc tggaggtgcg gccggggctg
      421 ttcctgggtg gagctgcggc agtcgcggag ccggaccacc tgagagaggc gggcatcacg
      481 gctgtgctga cggtcgactc ggaggagacc gacttcaaca cgggggctgg ggttgagggt
      541 ctacggagtc tcttcgtgcc agcgctggac aaacccgaga ccgacctgct tagccatctg
      601 gaccggtgcg tggccttcat cggccaggcc cgcgccgagg gccgcgcggt gcttgtgcat
      661 tgtcacgcag gggtcagtcg aagtgtggct gtaatgactg cttttatgat gaagactgac
      721 caacttacct ttgaaaaagc ctatgaaaac cttaagacta tcaaacgagg ggctaagatg
      781 aatgaggggt ttgagtggca actgaaatta taccaggcaa tgggatgtga agtagatacc
      841 tctagtgcaa tttataaaca gtatcgttta caaaaggtta cagagaagta tccagaattg
      901 cagaacttac ctcaagaact ctttgctgtt gacccatccg ccattacaca aggattgaaa
      961 gatggggttc tctacaaatg tagaaagtgc aggcgatctt tatttcgaag ttctagcatt
     1021 ttggatcata atgaaggaag tggtcctata gcctttgccc acaagagaat gacaccatcc
     1081 ttcatgctta ctacagggag tcaggctcaa tgtacatctt atttcattga acctgtgcag
     1141 tggatggaat ccactttgtt gggagtgatg gatggacagc ttctttgccc caaatgcaat
     1201 gccaagttgg gttctttcaa ctggtatgga gaacagtgct catgtggtag atggataaca
     1261 cctgcttttc aaatacataa gaacagagtg gatgaaatga aaatgctgcc agtttgggga
     1321 tcacaaacaa gaaaaatatg aacttgtgac atttgataac ttgctgatga tatgtgctac
     1381 ccttgcttat tgtcattcat ggcagattgt ttagttttag gccattaaca tttcatttga
     1441 aatatgagaa gctaaaaatc atttgactta gagactatac tttgtcagct tcttacacta
     1501 agtagaatgg aaatcaaaac cttttaatca cgtaaattat actttatttg atattaaaat
     1561 cttttataac ccaga
//
LOCUS       XM_032610059            2123 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 1B (SH2D1B),
            transcript variant X1, mRNA.
ACCESSION   XM_032610059
VERSION     XM_032610059.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2123
                     /gene="SH2D1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742424"
     CDS             58..468
                     /gene="SH2D1B"
                     /codon_start=1
                     /product="SH2 domain-containing protein 1B isoform X1"
                     /protein_id="XP_032465950.1"
                     /db_xref="GeneID:116742424"
                     /translation="MRALTVDLPYYHGPLSKRDCETLLLKEGVDGNFLLRDSESMPGV
                     LCLCVSFKKLVYTYRIFKEKHGYYNIQTVEGAQRQIFPNLEELISKFEKPNQGLVVHL
                     LRPIKRTCPSLRWRRSKIELDGIYENSDYVDVLP"
     misc_feature    73..381
                     /gene="SH2D1B"
                     /note="Src homology 2 (SH2) domain found in
                     SLAM-associated protein (SAP)1; Region: SH2_SAP1; cd10342"
                     /db_xref="CDD:198205"
     misc_feature    order(106..108,163..165,232..234)
                     /gene="SH2D1B"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198205"
     misc_feature    order(226..231,265..270,283..285,340..348)
                     /gene="SH2D1B"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198205"
ORIGIN      
        1 ctgagacact ccaatcacat ataaaaggta aacttgagtt gtctctgaac ttggaatatg
       61 agagcgctca ccgtggatct gccttattac cacggccctc tgtccaagcg agactgtgag
      121 accttgctgc tcaaggaagg ggtggacggc aactttctgt taagagacag tgagtctatg
      181 cccggagtcc tgtgcctctg tgtctcgttt aaaaagttgg tctacacata ccgaatcttc
      241 aaagagaaac atgggtatta caatatacag accgtggaag gtgctcaaag acagatcttt
      301 ccaaacctag aggaactgat ctccaagttt gaaaaaccaa atcaagggct ggtggttcac
      361 cttttaaggc caataaagag aacctgtccc tccctgagat ggagaagatc gaagatagag
      421 ctggatggta tttatgagaa cagcgattat gtggatgtct tgccttgaag ataaggagac
      481 tggacaaagc acttatagaa gagatggggt gatagctctc accagtgacc ctgcttctcc
      541 tgcaggtgta gatctgtaag gccaaactct aggggaaaat ttagactctc ttggtgtgag
      601 tgactgtcca ccagtctcag agaaatcact ccccctgccc cgccttccat gcatacacct
      661 tgagcagctt cgaaacccct tttcccctct cactcttctt tcttgcaata ggacagcctg
      721 aacctattct ccttgacttg ttaaaggtgc caccactaca tcacagttga catccccctt
      781 tcaaccacgt gaccagaggg gagagaagag agagcgttgg ctgctagtta ggagcctgag
      841 ttccagtcct ggctctgtga ctgcagacca acctcttcct ctttctcttt ctctgtttct
      901 tcatctataa aacaagtggc taagcagaag ggtacacaat gccccagcag agttaagacc
      961 tgattagtgt ggaatgtacc aaattctatg cccattctat cacccatctt caaaccgtag
     1021 tgattcattt caccccacta gacttacctt ttagagttat taaagagagg aacttagatc
     1081 tctagggaac atgagcagac attgtggctg gaaccccaaa gcacgagccg ttctgacttt
     1141 tgggtcacag caaaccacag tagagaagaa gtgcactgta gccatattga gagagctgag
     1201 ggggccaaat ccttctggtt ggttcggtaa aggacaccac agcaaacctg ctctccagga
     1261 tcctgggtct ttgatccttt ctccatggta caaagaagca tgttccagtt gtcagagcct
     1321 gcagcaagcc ttggcacaga aaatacattc agtgaatatt tcttaaataa atgactgaat
     1381 aaatcaatat acataaaatg tggccactta ttctggatag cagagatttg tttgaacttt
     1441 ctacatttca aaatccagta gaacgtgact attaattcaa gacctttcag ttgtaactct
     1501 catggaagtg atctcctttt ttctgagcat ctatgcgtag caccttacat gaggcttggt
     1561 cccagtgggt tttcagcata tttttcaaac gagcaagcca catttaatag ctgatgtgga
     1621 tgtcatgcta tagttccctg aaatttagaa gaccctgaac aggtcatatg aagaacagct
     1681 gaaagttctg agtctgtggg actggatgag ggaaaactta aactaaagca gtcgtttcaa
     1741 gtgtctgaag tgctgttctg tgaaagagcc tgaagattca ctgggtacaa tgccagacag
     1801 tggaactcag accaatggct gggtgtttat aggagggcag ttttagccaa atataagaaa
     1861 gaactctgaa cccactggag ctatcctaca ttcaaacagt cctccctctg ctgtggtcca
     1921 agtgacttag gtatggagag taatcacatt cctttgttca taactcatta ccaccatcaa
     1981 accatacaag actcttgttt tatttcattt ttcttccctt catccctaat tcccatttca
     2041 atggaaccag ctctgtacta tttgatacat gcccttggta tgtatgcacc cttgtagaat
     2101 atacagaatt ggttgtgact cta
//
LOCUS       XM_032610067            2130 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 1B (SH2D1B),
            transcript variant X2, mRNA.
ACCESSION   XM_032610067
VERSION     XM_032610067.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2130
                     /gene="SH2D1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742424"
     CDS             72..473
                     /gene="SH2D1B"
                     /codon_start=1
                     /product="SH2 domain-containing protein 1B isoform X2"
                     /protein_id="XP_032465958.1"
                     /db_xref="GeneID:116742424"
                     /translation="MRALTVDLPYYHGPLSKRDCETLLLKEGVDGNFLLRDSESMPGV
                     LCLCVSFKKLVYTYRIFKEKHGYYNIQTVEGAQRQIFPNLEELISKFEKPNQGLVVHL
                     LRPIKRTCPSLRWRRSKIELDENSDYVDVLP"
     misc_feature    87..395
                     /gene="SH2D1B"
                     /note="Src homology 2 (SH2) domain found in
                     SLAM-associated protein (SAP)1; Region: SH2_SAP1; cd10342"
                     /db_xref="CDD:198205"
     misc_feature    order(120..122,177..179,246..248)
                     /gene="SH2D1B"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198205"
     misc_feature    order(240..245,279..284,297..299,354..362)
                     /gene="SH2D1B"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198205"
ORIGIN      
        1 ggtatttcca caggcttcat taggccaact gcttcctctt ctctcctcag agttgtctct
       61 gaacttggaa tatgagagcg ctcaccgtgg atctgcctta ttaccacggc cctctgtcca
      121 agcgagactg tgagaccttg ctgctcaagg aaggggtgga cggcaacttt ctgttaagag
      181 acagtgagtc tatgcccgga gtcctgtgcc tctgtgtctc gtttaaaaag ttggtctaca
      241 cataccgaat cttcaaagag aaacatgggt attacaatat acagaccgtg gaaggtgctc
      301 aaagacagat ctttccaaac ctagaggaac tgatctccaa gtttgaaaaa ccaaatcaag
      361 ggctggtggt tcacctttta aggccaataa agagaacctg tccctccctg agatggagaa
      421 gatcgaagat agagctggat gagaacagcg attatgtgga tgtcttgcct tgaagataag
      481 gagactggac aaagcactta tagaagagat ggggtgatag ctctcaccag tgaccctgct
      541 tctcctgcag gtgtagatct gtaaggccaa actctagggg aaaatttaga ctctcttggt
      601 gtgagtgact gtccaccagt ctcagagaaa tcactccccc tgccccgcct tccatgcata
      661 caccttgagc agcttcgaaa ccccttttcc cctctcactc ttctttcttg caataggaca
      721 gcctgaacct attctccttg acttgttaaa ggtgccacca ctacatcaca gttgacatcc
      781 ccctttcaac cacgtgacca gaggggagag aagagagagc gttggctgct agttaggagc
      841 ctgagttcca gtcctggctc tgtgactgca gaccaacctc ttcctctttc tctttctctg
      901 tttcttcatc tataaaacaa gtggctaagc agaagggtac acaatgcccc agcagagtta
      961 agacctgatt agtgtggaat gtaccaaatt ctatgcccat tctatcaccc atcttcaaac
     1021 cgtagtgatt catttcaccc cactagactt accttttaga gttattaaag agaggaactt
     1081 agatctctag ggaacatgag cagacattgt ggctggaacc ccaaagcacg agccgttctg
     1141 acttttgggt cacagcaaac cacagtagag aagaagtgca ctgtagccat attgagagag
     1201 ctgagggggc caaatccttc tggttggttc ggtaaaggac accacagcaa acctgctctc
     1261 caggatcctg ggtctttgat cctttctcca tggtacaaag aagcatgttc cagttgtcag
     1321 agcctgcagc aagccttggc acagaaaata cattcagtga atatttctta aataaatgac
     1381 tgaataaatc aatatacata aaatgtggcc acttattctg gatagcagag atttgtttga
     1441 actttctaca tttcaaaatc cagtagaacg tgactattaa ttcaagacct ttcagttgta
     1501 actctcatgg aagtgatctc cttttttctg agcatctatg cgtagcacct tacatgaggc
     1561 ttggtcccag tgggttttca gcatattttt caaacgagca agccacattt aatagctgat
     1621 gtggatgtca tgctatagtt ccctgaaatt tagaagaccc tgaacaggtc atatgaagaa
     1681 cagctgaaag ttctgagtct gtgggactgg atgagggaaa acttaaacta aagcagtcgt
     1741 ttcaagtgtc tgaagtgctg ttctgtgaaa gagcctgaag attcactggg tacaatgcca
     1801 gacagtggaa ctcagaccaa tggctgggtg tttataggag ggcagtttta gccaaatata
     1861 agaaagaact ctgaacccac tggagctatc ctacattcaa acagtcctcc ctctgctgtg
     1921 gtccaagtga cttaggtatg gagagtaatc acattccttt gttcataact cattaccacc
     1981 atcaaaccat acaagactct tgttttattt catttttctt cccttcatcc ctaattccca
     2041 tttcaatgga accagctctg tactatttga tacatgccct tggtatgtat gcacccttgt
     2101 agaatataca gaattggttg tgactctata
//
LOCUS       XM_032610077            1973 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 1B (SH2D1B),
            transcript variant X3, mRNA.
ACCESSION   XM_032610077
VERSION     XM_032610077.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1973
                     /gene="SH2D1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742424"
     CDS             72..407
                     /gene="SH2D1B"
                     /codon_start=1
                     /product="SH2 domain-containing protein 1B isoform X3"
                     /protein_id="XP_032465968.1"
                     /db_xref="GeneID:116742424"
                     /translation="MRALTVDLPYYHGPLSKRDCETLLLKEGVDGNFLLRDSESMPGV
                     LCLCVSFKKLVYTYRIFKEKHGYYNIQRTAIMWMSCLEDKETGQSTYRRDGVIALTSD
                     PASPAGVDL"
     misc_feature    87..>293
                     /gene="SH2D1B"
                     /note="Src homology 2 (SH2) domain found in
                     SLAM-associated protein (SAP)1; Region: SH2_SAP1; cd10342"
                     /db_xref="CDD:198205"
     misc_feature    order(120..122,177..179,246..248)
                     /gene="SH2D1B"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198205"
ORIGIN      
        1 ggtatttcca caggcttcat taggccaact gcttcctctt ctctcctcag agttgtctct
       61 gaacttggaa tatgagagcg ctcaccgtgg atctgcctta ttaccacggc cctctgtcca
      121 agcgagactg tgagaccttg ctgctcaagg aaggggtgga cggcaacttt ctgttaagag
      181 acagtgagtc tatgcccgga gtcctgtgcc tctgtgtctc gtttaaaaag ttggtctaca
      241 cataccgaat cttcaaagag aaacatgggt attacaatat acagagaaca gcgattatgt
      301 ggatgtcttg ccttgaagat aaggagactg gacaaagcac ttatagaaga gatggggtga
      361 tagctctcac cagtgaccct gcttctcctg caggtgtaga tctgtaaggc caaactctag
      421 gggaaaattt agactctctt ggtgtgagtg actgtccacc agtctcagag aaatcactcc
      481 ccctgccccg ccttccatgc atacaccttg agcagcttcg aaaccccttt tcccctctca
      541 ctcttctttc ttgcaatagg acagcctgaa cctattctcc ttgacttgtt aaaggtgcca
      601 ccactacatc acagttgaca tccccctttc aaccacgtga ccagagggga gagaagagag
      661 agcgttggct gctagttagg agcctgagtt ccagtcctgg ctctgtgact gcagaccaac
      721 ctcttcctct ttctctttct ctgtttcttc atctataaaa caagtggcta agcagaaggg
      781 tacacaatgc cccagcagag ttaagacctg attagtgtgg aatgtaccaa attctatgcc
      841 cattctatca cccatcttca aaccgtagtg attcatttca ccccactaga cttacctttt
      901 agagttatta aagagaggaa cttagatctc tagggaacat gagcagacat tgtggctgga
      961 accccaaagc acgagccgtt ctgacttttg ggtcacagca aaccacagta gagaagaagt
     1021 gcactgtagc catattgaga gagctgaggg ggccaaatcc ttctggttgg ttcggtaaag
     1081 gacaccacag caaacctgct ctccaggatc ctgggtcttt gatcctttct ccatggtaca
     1141 aagaagcatg ttccagttgt cagagcctgc agcaagcctt ggcacagaaa atacattcag
     1201 tgaatatttc ttaaataaat gactgaataa atcaatatac ataaaatgtg gccacttatt
     1261 ctggatagca gagatttgtt tgaactttct acatttcaaa atccagtaga acgtgactat
     1321 taattcaaga cctttcagtt gtaactctca tggaagtgat ctcctttttt ctgagcatct
     1381 atgcgtagca ccttacatga ggcttggtcc cagtgggttt tcagcatatt tttcaaacga
     1441 gcaagccaca tttaatagct gatgtggatg tcatgctata gttccctgaa atttagaaga
     1501 ccctgaacag gtcatatgaa gaacagctga aagttctgag tctgtgggac tggatgaggg
     1561 aaaacttaaa ctaaagcagt cgtttcaagt gtctgaagtg ctgttctgtg aaagagcctg
     1621 aagattcact gggtacaatg ccagacagtg gaactcagac caatggctgg gtgtttatag
     1681 gagggcagtt ttagccaaat ataagaaaga actctgaacc cactggagct atcctacatt
     1741 caaacagtcc tccctctgct gtggtccaag tgacttaggt atggagagta atcacattcc
     1801 tttgttcata actcattacc accatcaaac catacaagac tcttgtttta tttcattttt
     1861 cttcccttca tccctaattc ccatttcaat ggaaccagct ctgtactatt tgatacatgc
     1921 ccttggtatg tatgcaccct tgtagaatat acagaattgg ttgtgactct ata
//
LOCUS       XM_032610094            1549 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus splicing factor 3b subunit 4 (SF3B4),
            mRNA.
ACCESSION   XM_032610094
VERSION     XM_032610094.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1549
                     /gene="SF3B4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742443"
     CDS             57..1331
                     /gene="SF3B4"
                     /codon_start=1
                     /product="splicing factor 3B subunit 4"
                     /protein_id="XP_032465985.1"
                     /db_xref="GeneID:116742443"
                     /translation="MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM
                     PKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANI
                     FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE
                     AMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPP
                     SAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPP
                     SAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPP
                     PRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPP
                     PYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ"
     misc_feature    99..320
                     /gene="SF3B4"
                     /note="RNA recognition motif 1 (RRM1) found in splicing
                     factor 3B subunit 4 (SF3B4) and similar proteins; Region:
                     RRM1_SF3B4; cd12334"
                     /db_xref="CDD:409771"
     misc_feature    351..599
                     /gene="SF3B4"
                     /note="RNA recognition motif 2 (RRM2) found in splicing
                     factor 3B subunit 4 (SF3B4) and similar proteins; Region:
                     RRM2_SF3B4; cd12335"
                     /db_xref="CDD:409772"
ORIGIN      
        1 gtgactgagg tcagggggcg ggatcgttgt ctggagacgg cgggagttct ttcgccatgg
       61 cggccgggcc gatctccgag cggaaccagg atgccactgt gtatgtgggg ggcctcgatg
      121 agaaggttag cgaaccgctg ctgtgggagc tatttctcca ggcagggcca gtagtcaaca
      181 cccacatgcc aaaggataga gtcactggtc agcaccaagg ctatggcttt gtggaattct
      241 tgagtgagga agatgctgac tatgccatta agatcatgaa catgatcaaa ctctatggga
      301 aaccaatacg ggtgaacaag gcatcagctc acaacaaaaa cctggatgtg ggggccaaca
      361 ttttcattgg gaacctggac ccagagatcg atgagaagtt gctttatgat actttcagcg
      421 cctttggggt catcttacaa acccccaaga ttatgcggga ccctgacaca ggcaactcca
      481 aaggttatgc ctttattaac ttcgcttcgt ttgatgcttc ggatgcagcg attgaggcca
      541 tgaatgggca gtacctctgt aaccgcccaa tcaccgtgtc ctatgctttc aagaaggact
      601 ccaaaggtga acgccatggc tcagccgctg aacgacttct ggcagcacag aacccactct
      661 cccaggctga ccgccctcat cagctgtttg cagatgcacc ccctccaccc tctgctccga
      721 atcctgtggt atcatcactg gggtctgggc ttcctccacc aggcatgcct cctcctggct
      781 ccttcccacc accagtaccg cctcctggag cccttccacc tgggataccc ccagccatgc
      841 ccccaccacc tatgcctcct ggagctggag gacatggccc cccatcagca ggaaccccag
      901 gggctggaca tcctggacat ggacactcac atcctcaccc attcccaccg ggtgggatgc
      961 cccatccagg gatgtctcag atgcagctgg cccaccatgg ccctcatggc ttaggacacc
     1021 cccatgctgg gccccctggc tctggggggc agccaccacc ccgaccacca cctggaatgc
     1081 ctcatcctgg acctcctcca atgggcatgc ccccccgagg gcctccgttc ggctctccca
     1141 tgggtcaccc aggtcctatg cctccgcatg gtatgcgtgg acctcctcca ctgatgcccc
     1201 ctcatggata cactggccct ccacgacctc caccctacgg ctaccagcgg gggcccctcc
     1261 ctccacccag acccactccc cggcctccag ttccccctcg aggcccactt cgaggccctc
     1321 tccctcagtg atttctcatt gcctttcctc ttgttatagc ctcccaatat ctgttcactt
     1381 ccttggacca atcagagttg ctgtagctcc caggggctaa ggcgctaatc cctctccggc
     1441 ctccttttgt aagtgtaatt tttttcacag gaggttttat ttttttctgt gtcagtccta
     1501 agtgttttgc aaatgcacag agaaaataaa actaaactcc ttgtttatt
//
LOCUS       XM_032610117            4237 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leptin receptor (LEPR), mRNA.
ACCESSION   XM_032610117
VERSION     XM_032610117.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4237
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4237
                     /gene="LEPR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, 33 Proteins, and 70%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116742458"
     CDS             223..3720
                     /gene="LEPR"
                     /codon_start=1
                     /product="leptin receptor"
                     /protein_id="XP_032466008.1"
                     /db_xref="GeneID:116742458"
                     /translation="MSCQKFCVAFLHWEFIYVITAFNLAYPITPWKFKLSCMPRNTTY
                     DFLLPAGISKNTSNLSGHYEALVETKLNSSGTYLSNLSSRTTFHCCFWSEEDKNCSVH
                     ADNIEGKAFVSTVNSLVFQQIGANWNIQCWMKEDLKLFICYMESLFKSPFKNYDLKVH
                     LLYLLLEVLEESPLLPQKSSFQIVQCNCSVHECCECHVPVPTVKINYTLLMYLKITSG
                     GVIFHSPPMSVQPINVVKPDPPLGLCMKITDTGNLKISWSNPTLVPFQLQYQVKYSEN
                     SPKNMRKADEIVSATSLLVDSVLPGSSYEVQVRSKRLDGPGIWSDWSTPLTFTTQDVI
                     YFPPKILTTVGSNVSFHCIYKNENKIVSSKKIVWWMNLAEKIPQSQYDVVGDHVSKVT
                     FPNLNATKPRGKFTYDAVYCCNEHECHHRYAELYVIDVNINISCETDGYLTKMTCRWS
                     PSAIQSLVGSTLQLRYQRSSLYCSDVPSIHPISEPKDCPLQRDGFYECLFQPIFLLSG
                     YTMWIRINHSLGSLDSPPTCVIPDSVVKPLPPSSVKAEITVKIGLLKISWEKPVFPEN
                     NLQFQIRYGLSGKKVQWKVFEVYDAKLKSASFPVPDLCAVYAVQVRCKRLDGLGYWSN
                     WSTPAYTIVTDIKVPIRGPEFWRIINEDNTKKERNVTLLWKPLMKNDSLCSVRSYVVK
                     HHTSRNGTWSEDVGNHTKFTFLWTEQAHSVTVLAVNSIGASSANFNLTFSWPMSKVNI
                     VQSLSAYPLNSSCVILSWMLSPSDYNLMYFILEWKILHEDNEIKWLRIPSSVKKYYVH
                     DHFIPIEKYQFSLYPIFMEGVGKPKIIDSFTQDDEKHQHDAGLYVIVPIIISSSILLL
                     GTLLISHQRMKKLFWEDVPNPKNCSWAQGLNFQKPETFEHLFIKHTESVTFGPLLLEP
                     ETISEDISVDTSWKNKDEMVPPTTVSLLLMTRDLEKGSICISDQCNSAHFSEVESTEI
                     TCEEESRRQPSVKYATLLSNSKSGETEGEQSLVNSAVSKSFSSNNSLPKDSFSNNSWE
                     IETQAFFILSDQHPNIISPHLPFSGGLDELLKFEGNFPEENNDERSVYYLGVTSIKKR
                     ESDVLLTDESRVLSPFPSHCLFTDIRILQDSCSHLVENNFNLGTSDQKTFVSYIPQFQ
                     TCSTQTQKIVENKMCDLTV"
     misc_feature    598..921
                     /gene="LEPR"
                     /note="Obesity receptor immunoglobulin like domain;
                     Region: ObR_Ig; pfam18589"
                     /db_xref="CDD:465812"
     misc_feature    931..1212
                     /gene="LEPR"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(931..933,1120..1122,1165..1167)
                     /gene="LEPR"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1177..1182,1186..1191)
                     /gene="LEPR"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1207..1482
                     /gene="LEPR"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    1513..1821
                     /gene="LEPR"
                     /note="Obesity receptor immunoglobulin like domain;
                     Region: ObR_Ig; pfam18589"
                     /db_xref="CDD:465812"
     misc_feature    2443..2682
                     /gene="LEPR"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
ORIGIN      
        1 ctgatgcaca gaggcctgtt agtctctgct cggcaccttc ggcagggagt ttggagccgc
       61 cccaccgcag agcctacagc cggccgagcc cccgcgccgc cgccatctct gcctccgcct
      121 gggtgggacc tgggcctcga ggtctccttc ctactttgga aactgaaggg attgcgacgg
      181 aaaccaattt actgtttttc aggcgcactt ctctgaagta agatgagttg tcaaaaattc
      241 tgtgtggctt ttttacattg ggaatttatt tatgtgataa ctgcatttaa cttggcatat
      301 ccaattactc cctggaaatt taagttgtct tgcatgccac gaaatacaac atatgacttc
      361 ctcttgcctg ctggaatctc aaagaacact tcaaatttga gtggacatta tgaggcactt
      421 gttgaaacta aacttaattc aagtggtacc tacttatcta acttatcatc cagaacaact
      481 ttccactgtt gcttttggag cgaggaagat aaaaactgct ctgtacatgc agacaacatt
      541 gaagggaagg catttgtttc aacagtaaat tctttagttt ttcaacaaat aggtgcaaac
      601 tggaacatac agtgctggat gaaagaggac ttgaaattat tcatctgtta tatggagtca
      661 ttatttaaga gtcctttcaa gaattatgac cttaaggtcc atcttttata tcttctgctt
      721 gaagtattag aagagtcacc tctgctcccc cagaaaagta gttttcagat tgttcagtgc
      781 aactgcagtg ttcatgaatg ttgtgaatgt catgtgcccg tgccaacagt caaaatcaat
      841 tacacccttc ttatgtattt gaaaatcaca tctggtggag taatttttca ctcacctcca
      901 atgtcagttc agcccattaa tgttgtgaag cctgatccac cattaggttt gtgtatgaaa
      961 atcacagata ctggtaattt aaagatttct tggtccaacc caacattggt accatttcaa
     1021 cttcaatatc aagtgaaata ttcagagaat tctccaaaaa atatgagaaa agctgatgag
     1081 attgtctcag ctacatctct gctagtagac agtgtgcttc ctgggtcttc gtatgaggtt
     1141 caggtgagga gcaagagact ggatggccca ggaatctgga gtgactggag cacccccctt
     1201 acctttacca cacaagatgt catatacttt ccacctaaaa ttctgacaac cgttgggtct
     1261 aacgtttctt ttcactgcat ctataaaaat gaaaacaaga tagtttcctc aaaaaagatt
     1321 gtttggtgga tgaatttagc tgagaaaatt ccccaaagcc agtatgatgt tgtgggtgac
     1381 catgttagca aagttacttt tcctaatttg aatgcaacca aaccccgagg aaagttcacc
     1441 tatgacgcag tgtactgctg caatgagcat gagtgccacc atcgctatgc tgagttatat
     1501 gtgattgatg tcaatatcaa tatatcatgt gaaactgatg ggtacttaac taaaatgact
     1561 tgcagatggt cacccagtgc aatccaatca cttgtgggaa gcactttgca gttgaggtat
     1621 cagaggagca gcctttactg ttctgatgtt ccatctattc atcccatatc tgaacccaaa
     1681 gattgcccct tgcagagaga tggtttttat gaatgcctat ttcagccaat ctttctatta
     1741 tccggctata caatgtggat tagaattaat cactccttgg gttcactgga ctctccacca
     1801 acatgtgtca ttcctgattc cgtggtgaaa ccactgcctc catctagtgt gaaagcagaa
     1861 attactgtaa aaattggatt attgaaaata tcttgggaga agccagtctt tccagagaat
     1921 aatcttcagt tccagattcg ctatggttta agtggaaaaa aagtacaatg gaaggtattc
     1981 gaggtgtatg atgcaaaatt aaagtctgcc agtttcccgg tgccagacct gtgtgcagtc
     2041 tatgctgtcc aggtgcgctg taagaggcta gatggactgg gatattggag taattggagt
     2101 actccagcct acacaattgt cacggatata aaagttccta tcagaggacc tgaattttgg
     2161 agaataatta atgaagacaa cactaaaaaa gagagaaatg tcactttgct ttggaagccc
     2221 ctgatgaaaa atgactcatt gtgcagtgtg agaagctacg tggtgaaaca tcatacttcc
     2281 cgcaatggaa catggtcaga agatgtagga aatcacacta aattcacttt cctttggaca
     2341 gagcaagcac actctgttac cgttctggcc gtcaattcaa ttggtgcttc ttctgcaaat
     2401 tttaatttaa cattctcatg gcccatgagc aaagtaaata tcgtgcagtc actcagtgca
     2461 tatcctttaa acagcagttg tgtaattctt tcctggatgc tatcacccag tgattacaat
     2521 ctgatgtatt ttattcttga gtggaaaatt cttcatgaag acaatgaaat taaatggctt
     2581 agaatccctt cctctgttaa gaagtattat gtccacgatc attttatccc cattgagaag
     2641 tatcagttca gtctttaccc aatatttatg gagggagtgg ggaaaccgaa gataattgat
     2701 agtttcaccc aagatgatga aaaacaccag catgatgcag gtctatatgt aattgtgcca
     2761 ataattattt cctcttccat cttattgctt ggaacattgt taatatcaca ccaaaggatg
     2821 aaaaagctgt tttgggaaga tgttccaaac cccaagaatt gttcctgggc acaaggactt
     2881 aattttcaga agccagaaac atttgagcat ctttttatca agcatacaga atcagtgaca
     2941 tttggtcctc ttcttttgga acctgaaacc atttcagaag atatcagtgt tgatacatca
     3001 tggaaaaata aagatgagat ggtaccacca actacagtct ctctactttt gatgactcgg
     3061 gatcttgaaa agggctctat ttgtattagt gaccaatgca acagtgctca cttctctgag
     3121 gttgagagca cagagataac ctgtgaggag gaaagtagga gacaaccctc tgttaaatat
     3181 gccaccctgc tcagcaactc taaatcaggt gaaactgagg gagagcaaag tcttgtaaat
     3241 agcgcagtca gcaaaagctt ctctagcaac aattctctac ctaaagattc tttctctaat
     3301 aactcatggg agatagaaac ccaggcattt tttatattat cagatcagca tcccaatata
     3361 atttcaccac accttccatt ctcaggagga ttggatgaac ttttgaaatt cgagggaaat
     3421 ttccctgaag aaaataatga cgaaaggtct gtctattatt taggagtcac ttcaatcaaa
     3481 aagagagaga gtgatgtgct tttgactgat gagtcaagag tgttgtcccc attcccatcc
     3541 cactgtttat tcaccgacat cagaatcctc caggacagtt gctcacacct tgtagaaaat
     3601 aacttcaatt taggaacttc tgatcagaag acttttgtat cttacatacc tcaatttcag
     3661 acttgttcta ctcagactca gaaaatagtg gaaaacaaga tgtgtgacct aactgtctaa
     3721 tttcattcca gacacatctc agatttatga tgtaatgagt catatgaagg gtaatatatt
     3781 ccactatagt gttggttagg ggagagaaaa gaaaactgtc agaggcaaat ttgaaaatga
     3841 ttgtttcaaa actaatggta tctgtcctca ctcagtaata tagacaaaaa atgtgagaaa
     3901 gccttcaaaa gcctagcagt gtagaccgac tcttctaatg attaatcagc accttgggaa
     3961 ggtctccagt ggcttgtgtc tagctagcca taaacccaac agtactattt tctttgaaca
     4021 tcgaacccac gtggaaagag ctagtcatct gaattacact cacatctgaa agaacacttc
     4081 acactaacac ttgtgaaatg taactgtatt ttcaagggtg tggttatttt accttgagtt
     4141 gtcttttctg tgcactaatt tacacataca cacaattata cctaataggc atccttgtgc
     4201 attttaaaag tgtgcaatgt atttgtattt tgtgcta
//
LOCUS       XM_032610129            1572 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylacetamide deacetylase like 4
            (AADACL4), mRNA.
ACCESSION   XM_032610129
VERSION     XM_032610129.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 33% of CDS bases
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               VOSU01000011.1     9943487-9943654
            169-360             VOSU01000011.1     9947609-9947800
            361-385             VOSU01000011.1     9947802-9947826
            386-449             VOSU01000011.1     9951470-9951533
            450-720             VOSU01000011.1     9953548-9953818
            721-722             "NN"               1-2
            723-999             VOSU01000011.1     9953819-9954095
            1000-1000           "N"                1-1
            1001-1187           VOSU01000011.1     9954096-9954282
            1188-1572           VOSU01000011.1     9966919-9967303
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1572
                     /gene="AADACL4"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins"
                     /db_xref="GeneID:116742465"
     CDS             1..1572
                     /gene="AADACL4"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     deleted 1 base in 1 codon; substituted 1 base at 1 genomic
                     stop codon"
                     /codon_start=1
                     /transl_except=(pos:757..759,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: arylacetamide
                     deacetylase-like 4"
                     /protein_id="XP_032466020.1"
                     /db_xref="GeneID:116742465"
                     /translation="MVVPWLVLLAALCTFLLGVFVWAVFEHFLTTGVPSTLQHPAKFR
                     SLHCMFLYMVTLGNILEKLRICSMPRFIQFLHNGVRIKKDPGLVVTNLRFGTVPMRLF
                     QPKVASPSPRRGIIFFHGGATVLGSLDMYRALCGFLAQETNSVLLSIGAFTPVVDGQE
                     RVQGGMGISASFWQVCVVICGDSAGAGIATLTSQTLVGRSGLPRIRAQVLIYPIVQLI
                     NFRLPSFSQNQHVQFLTRKFMMXVFKYVLIDFSWXDAILSGAFIPPEVWKKYWKWVSA
                     DNVPKRFKKTDYQPVFPAPFNEAAYLGNNPLLDVEHTPLIKVDETIAQLPKAFLVSCX
                     DILHDDILLYKKCLEDQWVPVTWYHVEDGFHGSLILFDWKPFSFPCSLKIVNAIVSCI
                     KSTLRRSFPCSTSALGDGAGGGFGGRAQTCFGYARRRCRRRAAAAAAAAPGAHASRNT
                     SGEPSAPLLRAQHPQPAPRAQLNRRAGLAAQHGFPPGAGARVLTLPAGGRGVRREVAQ
                     ANSVVHWPVSLWWED"
     misc_feature    343..1098
                     /gene="AADACL4"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; Region:
                     alpha/beta hydrolases; cl21494"
                     /db_xref="CDD:473884"
ORIGIN      
        1 atggttgtcc cgtggctggt gcttctagct gcactgtgca cctttctcct gggggtcttt
       61 gtctgggctg tctttgagca cttcctcacc acaggtgtcc cctctactct gcaacatcct
      121 gccaagttcc gatctctgca ctgcatgttc ctctacatgg tcactttggg gaatatactt
      181 gagaaattga ggatttgctc catgcccaga tttattcagt ttttgcacaa cggcgtgaga
      241 atcaagaagg accctgggct tgtggtaacc aacctgcgtt ttggaaccgt acccatgagg
      301 ctgttccagc ccaaggtggc ctcccccagc ccccggcgag gcatcatctt cttccacgga
      361 ggggccaccg tattagggag cctggacatg taccgcgccc tgtgtggttt tctagcccaa
      421 gagaccaact ctgtgctgct gtcgattgga gccttcaccc ctgtggtgga tgggcaagag
      481 agagtccaag gaggcatggg catttctgct tccttctggc aggtctgcgt tgtgatctgc
      541 ggagacagtg ctggggcagg gattgcgacc ttgacctctc agaccctggt gggcagatct
      601 ggtcttcctc ggatccgggc ccaggtcctg atttatccca ttgtccaact cattaatttt
      661 cggctgccat ccttttcgca gaaccaacac gtccagttcc tcacccggaa gttcatgatg
      721 nncgtgttta aatacgtgct tatcgacttc tcctggtgag atgccatctt gagtggtgct
      781 tttattcccc cggaagtctg gaagaagtac tggaagtggg tcagcgcgga caacgtaccc
      841 aagagattca agaagacaga ctaccaacct gtgtttcctg cccctttcaa tgaggctgcc
      901 tatctaggaa acaatccctt gttggatgtg gaacatacac ccctcataaa ggttgatgag
      961 accattgccc agcttcccaa ggccttcctg gtgagctgtn atgacatcct ccatgatgac
     1021 atcttgctct ataagaagtg cttggaggac cagtgggtcc ccgtgacgtg gtaccacgtg
     1081 gaggatggct ttcatggatc tctgatatta tttgattgga agcctttctc tttcccatgc
     1141 tccctgaaaa ttgtgaatgc tatagtcagt tgtataaaga gcacactgcg gcgcagcttc
     1201 ccctgcagca cttccgctct cggggatgga gccggagggg gctttggagg ccgcgcgcag
     1261 acctgctttg gctacgcgcg gcgccgctgt cgtaggagag cggcagcagc agccgcggcg
     1321 gccccagggg ctcacgcctc ccgcaacacc tcgggggagc cgagcgcgcc tctcctgcga
     1381 gcccagcacc cccaacctgc tccccgcgcg cagctgaacc gccgcgcggg actcgccgcc
     1441 caacatggat ttcctcctgg cgctggtgct cgggtcctca ctctacctgc gggtggccgc
     1501 ggagttcgac gggaggtggc ccaggcaaat agtgtcgtcc attggcctgt gtcgttatgg
     1561 tgggaggatt ga
//
LOCUS       XM_032610142            3289 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus EPH receptor B2 (EPHB2), mRNA.
ACCESSION   XM_032610142
VERSION     XM_032610142.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                VOSU01000011.1     17724162-17724217
            57-121              VOSU01000011.1     17788482-17788546
            122-394             VOSU01000011.1     17791857-17792129
            395-806             VOSU01000011.1     17792131-17792542
            807-962             VOSU01000011.1     17867650-17867805
            963-1298            VOSU01000011.1     17868962-17869297
            1299-1423           VOSU01000011.1     17884079-17884203
            1424-1586           VOSU01000011.1     17892116-17892278
            1587-1695           VOSU01000011.1     17894606-17894714
            1696-1760           VOSU01000011.1     17895617-17895681
            1761-1883           VOSU01000011.1     17902693-17902815
            1884-2131           VOSU01000011.1     17903398-17903645
            2132-2347           VOSU01000011.1     17904610-17904825
            2348-2497           VOSU01000011.1     17905597-17905746
            2498-2691           VOSU01000011.1     17906802-17906995
            2692-2847           VOSU01000011.1     17908464-17908619
            2848-3289           VOSU01000011.1     17909170-17909611
FEATURES             Location/Qualifiers
     source          1..3289
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3289
                     /gene="EPHB2"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 13 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742471"
     CDS             65..2956
                     /gene="EPHB2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: ephrin type-B receptor 2"
                     /protein_id="XP_032466033.1"
                     /db_xref="GeneID:116742471"
                     /translation="MDSTTATAELGWIVHPPSGWEEVSGYDENMNTIRTYQVCNVFES
                     SQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDSATK
                     TFPNWMENRWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRSGFYLAFQDYGG
                     CMSLIAVRVFYRKCPRIIQNGAIFQETLSGAESTSLVAARGSCIANAEEVDVPIKLYC
                     NGDGEWLVPIGRCMCKAGFEAVENGTVCRGCPSGTFKANQGDEACTHCPINSRTTSEG
                     ATNCVCRNGYYRADLDPLDMPCTTIPSAPQAVISSVNETSLMLEWSPPRDSGGREDLV
                     YNIICKSCGSGRGACTRCGDNVQYAPRQLGLTEPRIYISDLLAHTQYTFEIQAVNGVT
                     DQSPFSPQFASVNITTNQAAPSAVSIMHQVSRTVDSITLSWSQPDQPNGVILDYELQY
                     YEKELSEYNATAIKSPTNTVTVQGLKAGAIYVFQVRARTVAGYGRYSGKMYFQTMTEA
                     EYQTSIQEKLPLIIGSSAAGLVFLIAVVVIAIVCNRRGFERADSEYTDKLQHYTSGHM
                     TPGMKIYIDPFTYEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKRE
                     IFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENG
                     SLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVS
                     DFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS
                     YGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNT
                     LDKMIRNPNSLKAMAPLSSGINLPLLDRTIPDYTSFNTVDEWLEAIKMGQYKESFANA
                     GFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMNQIQSVEV"
     misc_feature    65..583
                     /gene="EPHB2"
                     /note="Ligand Binding Domain of Ephrin type-B Receptor 2;
                     Region: EphR_LBD_B2; cd10477"
                     /db_xref="CDD:198445"
     misc_feature    order(77..85,89..91,125..136,140..142,152..154,158..160,
                     164..166,173..175,272..280,290..292,296..298,434..436,
                     440..463,467..472,545..547,551..553,557..559)
                     /gene="EPHB2"
                     /note="ephrin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:198445"
     misc_feature    order(968..970,1193..1195,1238..1240)
                     /gene="EPHB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    971..1258
                     /gene="EPHB2"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    order(1241..1243,1247..1249,1253..1258)
                     /gene="EPHB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    order(1301..1303,1493..1495,1538..1540)
                     /gene="EPHB2"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     misc_feature    1304..1555
                     /gene="EPHB2"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    order(1541..1546,1550..1555)
                     /gene="EPHB2"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1625..1846
                     /gene="EPHB2"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     Region: EphA2_TM; pfam14575"
                     /db_xref="CDD:464211"
     misc_feature    1841..2647
                     /gene="EPHB2"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphB Ephrin Receptors; Region: PTKc_EphR_B; cd05065"
                     /db_xref="CDD:173638"
     misc_feature    order(1874..1888,1898..1900,1946..1948,1952..1954,
                     2090..2095,2099..2101,2111..2113,2231..2233,2243..2248,
                     2252..2254,2285..2287,2348..2362,2387..2389,2489..2491)
                     /gene="EPHB2"
                     /note="active site"
                     /db_xref="CDD:173638"
     misc_feature    order(1874..1882,1886..1888,1898..1900,1946..1948,
                     1952..1954,2090..2095,2099..2101,2111..2113,2246..2248,
                     2252..2254,2285..2287)
                     /gene="EPHB2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:173638"
     misc_feature    order(2231..2233,2243..2245,2348..2362,2387..2389,
                     2489..2491)
                     /gene="EPHB2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:173638"
     misc_feature    2282..2368
                     /gene="EPHB2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:173638"
     misc_feature    2723..2935
                     /gene="EPHB2"
                     /note="SAM domain of EPH-B2 subfamily of tyrosine kinase
                     receptors; Region: SAM_EPH-B2; cd09552"
                     /db_xref="CDD:188951"
     misc_feature    order(2729..2734,2738..2740,2804..2806,2822..2827,
                     2849..2851,2873..2884,2888..2893,2915..2917,2927..2929)
                     /gene="EPHB2"
                     /note="homooligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188951"
     misc_feature    order(2729..2731,2738..2740,2756..2758,2819..2821,
                     2903..2905,2912..2917)
                     /gene="EPHB2"
                     /note="putative homodimer interface (head-to-head)
                     [polypeptide binding]; other site"
                     /db_xref="CDD:188951"
     misc_feature    order(2783..2785,2882..2884)
                     /gene="EPHB2"
                     /note="putative phosphorylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:188951"
     misc_feature    order(2831..2848,2855..2857,2909..2911,2918..2920,
                     2927..2932)
                     /gene="EPHB2"
                     /note="homodimer interface (tail-to-tail) [polypeptide
                     binding]; other site"
                     /db_xref="CDD:188951"
ORIGIN      
        1 cctgcggagg ctgggggccg cgctgctgct gttgccgctg ctcgccgccg tggaagaaac
       61 gctgatggac tcaaccacag cgacggcgga gctgggctgg attgtgcatc ctccatcagg
      121 gtgggaagag gtgagtggct acgacgagaa catgaacacg atccgcacgt accaggtgtg
      181 caatgtgttt gaatcgagcc agaacaactg gctacggacc aagttcatcc ggcgccgtgg
      241 cgcccatcgc atccacgtag agatgaagtt ctcggtgcgt gactgcagca gcatccccag
      301 cgtgcctggc tcctgcaaag agaccttcaa tctctattac tatgaggccg atttcgactc
      361 ggccaccaag accttcccca actggatgga gaaccggtgg gtgaaggtgg acaccattgc
      421 cgccgacgag agcttctccc aggtggacct tggtggccgg gtcatgaaga tcaacaccga
      481 ggtgcggagc ttcgggcccg tgtcccgcag tggcttctac ctggccttcc aggactatgg
      541 cggctgcatg tctctcatcg ccgtgcgcgt cttctaccgc aagtgccccc gcattatcca
      601 gaacggcgcc atcttccagg agactctgtc aggggctgag agcacatcgc tggtggctgc
      661 ccggggtagc tgcatcgcca acgcggagga ggtggacgtg cccatcaagc tctactgtaa
      721 cggggatggc gagtggctgg tgcccatcgg gcgctgcatg tgcaaagcgg gcttcgaggc
      781 cgtggagaat ggcactgttt gccgaggttg cccatctgga accttcaagg ccaaccaagg
      841 ggatgaggcc tgtacccact gtcccatcaa cagccggacc acttcagaag gggctaccaa
      901 ctgcgtctgc cgcaatggct actacagagc agacctggac cccctggaca tgccctgcac
      961 aaccatcccc tccgcacccc aggctgtgat ctccagtgtc aacgagacct cacttatgct
     1021 agagtggagc ccaccccggg actcaggagg ccgtgaggat cttgtctaca acatcatctg
     1081 caagagctgt ggctcgggcc ggggcgcctg cacccgctgt ggggacaacg tacagtacgc
     1141 accccgccag ctgggcctga ccgagcctcg catttacatc agtgacctgc tggcccacac
     1201 ccagtacacc tttgagatcc aggccgtgaa tggcgtcacc gaccagagcc ccttctcacc
     1261 gcagttcgcc tctgtgaaca tcaccaccaa ccaggcagct ccatcggccg tgtccatcat
     1321 gcaccaggtg agccgcaccg tggacagcat taccctgtcg tggtcccagc ccgaccagcc
     1381 caatggcgtc atcctggatt acgagctgca gtactatgag aaggagctga gtgagtacaa
     1441 cgccacagcc ataaaaagcc ccaccaacac ggtcactgtg cagggcctca aagccggcgc
     1501 catctatgtc ttccaggtgc gggcacgcac cgtggcgggc tacgggcgct acagtggcaa
     1561 gatgtacttc cagaccatga cagaagccga gtaccagaca agcatccagg agaagctgcc
     1621 cctcatcatc ggctcctcgg cagctggcct ggtcttcctc attgctgtgg ttgtgatcgc
     1681 catcgtgtgt aacagacggg ggtttgagcg cgctgactcg gagtacacgg acaagctgca
     1741 gcactacacc agtggccaca tgaccccagg catgaagatc tacatcgacc ctttcaccta
     1801 cgaggacccc aatgaggcag tgcgggagtt tgccaaggaa attgacatct cctgtgtcaa
     1861 aattgagcag gtgatcggag caggggagtt tggtgaggta tgcagcggcc acctgaagct
     1921 tccaggcaag agagagatct ttgtagccat caagacgctc aagtcgggct atactgagaa
     1981 gcagcgccgg gacttcctga gcgaggcctc catcatgggc cagttcgacc accccaatgt
     2041 catccacctg gagggtgttg tcaccaagag cacacctgtg atgatcatca ctgagtttat
     2101 ggagaatggc tccctggact ccttcctccg gcaaaatgat gggcagttca cagtcatcca
     2161 gctggtgggc atgctgcggg gcatcgcggc cggcatgaag tacctggcag acatgaacta
     2221 cgtccaccgc gacctggctg cccgcaacat cctcgtcaac agcaacctgg tctgcaaggt
     2281 gtctgacttt gggctctcac gctttctgga ggacgatacc tcagacccca cctacaccag
     2341 cgccctgggt gggaagatcc ccatccgctg gacggcccca gaagccatcc agtaccggaa
     2401 gttcacctcg gccagtgacg tctggagcta tggtatcgtc atgtgggagg tgatgtccta
     2461 tggggagcga ccctactggg acatgaccaa ccaggacgta atcaatgcca tagagcagga
     2521 ctatcggctg ccaccgccca tggactgccc aagcgcgctg caccagctca tgctggactg
     2581 ctggcagaag gaccgcaacc accggcccaa gttcggccag atcgtcaaca cgctggacaa
     2641 gatgatccgc aaccctaaca gcctcaaagc catggcgccc ctctcttccg gaatcaacct
     2701 gccgctgctg gaccgcacga tccccgacta caccagcttt aacacagtgg acgagtggct
     2761 ggaggccatc aagatggggc agtacaagga gagcttcgcc aatgccggct tcacctcctt
     2821 cgatgtcgtg tcgcagatga tgatggagga cattctccgg gttggggtca ccttggctgg
     2881 tcaccagaaa aaaatcctga acagtatcca ggtgatgcgg gcacagatga accagatcca
     2941 gtctgtggag gtttgacgtt cacctgcctc agctcacctc ttcctccagg ccccgccccc
     3001 tccgccccac atgctggccc ccggttcttc gtccaccgca gggtcagcca cctgccagga
     3061 ggccacgggc aacaggaaga accaagcagc gctccagcca tgagacgtca ccaagaacaa
     3121 cacgtgcaac ttcagatgat ggaaaaaagg gaatggggac aaaagaaaat agatcccggg
     3181 agggggcggg aaatacaagg aatagttttt aaagaggatt ctcataagga aagcgatcat
     3241 tgttcttgga ggaaaaaaag ggcttgggag attcatgcag tttgtccaa
//
LOCUS       XM_032610149            1705 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X1, mRNA.
ACCESSION   XM_032610149
VERSION     XM_032610149.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1705
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742475"
     CDS             43..1704
                     /gene="UBXN11"
                     /codon_start=1
                     /product="UBX domain-containing protein 11 isoform X1"
                     /protein_id="XP_032466040.1"
                     /db_xref="GeneID:116742475"
                     /translation="MLLPCLPQAQTFASQPSFSPHRGAGIGHPGPPREPGWENSKKRP
                     VLVGSLLSSVPSFLSSYAGGTENRPLHLDQGPGPPFRLGFSPRAVTWASLSAEDEVDM
                     LNDAHGSEERISVPSCHGGIGAPVTRQVPVYHDSELMATMARKVRDLERQVKAQADEM
                     LSKDQKIRALEELVETLQEHQGTVTLQRQEELETTCAQLQRQVGEMERFLGDYGLQWV
                     GEPMHEEDSEDGERDWMTAKKFWKPAFACGAGTGLLAHVGHCRDFTAAGDSLVPPEVD
                     FDRLLASLKDLSELAVDSDTQQSPMPSRVPHGVLEPIPLELYRNGIVMFDGPFRPFHD
                     PSTQRCLRDILDGFFPSELQRLYPDGVPFKVSDLRNQVYPENGLDPFPGEGRVVGWQR
                     IRKPLDRMEHPGSRMIAEKFLNRLPKLVIRQGEVIDIRGPIRDTLKIQEIVVETPALA
                     AERERSQESPESPVPALSTLRIKSENGEQAFLLLMRPEDTVGDVRTLLAQARAVEATT
                     FEIFSTFPPTVYHNDALTLQAVGLVPNATLLLRARRAPLPAPGPE"
     misc_feature    <424..>681
                     /gene="UBXN11"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    985..1200
                     /gene="UBXN11"
                     /note="SEP domain; Region: SEP; pfam08059"
                     /db_xref="CDD:462348"
     misc_feature    1441..1665
                     /gene="UBXN11"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 11 (UBXN11) and similar proteins; Region:
                     UBX_UBXN11; cd17077"
                     /db_xref="CDD:340597"
     misc_feature    order(1447..1449,1453..1455,1459..1464,1471..1476,
                     1480..1482,1579..1584,1588..1590,1642..1653,1657..1659,
                     1663..1665)
                     /gene="UBXN11"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340597"
ORIGIN      
        1 ctgcagcccg ttacagcctt ttctccctga agcccagtcc tcatgttgct gccctgcctc
       61 ccgcaggctc agacctttgc atcccagccc tcctttagcc cccaccgcgg tgccggcatt
      121 ggccacccag gtccccccag ggagccaggt tgggagaact ccaagaagag gcctgttctg
      181 gttggatcct tgctctccag cgtcccaagt tttctatcct catatgctgg ggggacagag
      241 aacaggccac ttcatcttga ccagggccca gggcccccgt ttcgcctggg cttcagcccc
      301 agagcagtga cctgggcatc cctgtctgca gaagatgagg tggacatgct gaatgacgcg
      361 cacggctcag aagaaaggat ctctgttcct tcctgccatg gtggcatagg tgcccctgtg
      421 actaggcaag tccctgtgta ccacgactcg gagttgatgg ccaccatggc gaggaaagtg
      481 cgggatctgg agcggcaggt gaaggcccag gcggatgaga tgctctccaa ggatcagaag
      541 atacgggcct tggaggagct ggtggagacc ctccaggagc accagggcac ggtgaccctg
      601 cagcggcagg aggagctgga gaccacatgc gcgcagctgc agcggcaggt cggggagatg
      661 gagcggttcc tcggtgacta cggcctgcag tgggtgggtg agcccatgca tgaggaggac
      721 tcggaggatg gcgagaggga ctggatgaca gccaagaagt tctggaagcc agccttcgcc
      781 tgcggtgctg ggacgggcct gctggcgcac gtcggacact gccgggattt cacagcagca
      841 ggagactcac tggtaccccc cgaggtagac tttgacaggc tgctggctag cctgaaggat
      901 ctcagtgagc tggcggtaga cagtgacacc cagcaatcac caatgcccag cagagtgcca
      961 cacggtgtcc ttgagcccat cccactggag ctctaccgga atggcatcgt gatgttcgat
     1021 gggcccttcc ggcccttcca cgatccctcc acacagcgct gcctccgaga catattggat
     1081 ggcttcttcc cgtcagagct ccagcggctg taccctgacg gggtcccctt taaggtgagt
     1141 gacctgcgca atcaggtcta cccagagaat gggctggacc cgttcccagg cgagggccga
     1201 gtggtaggct ggcagaggat tcgaaagccc ttggacagga tggagcaccc aggctccagg
     1261 atgatcgccg agaagtttct gaacaggctg cccaaattag tgatccgaca aggcgaggtg
     1321 attgacattc gaggccccat ccgggacacc ctgaagatcc aggagatcgt ggtggagacg
     1381 cctgccttgg ctgctgagcg tgagaggagc caggagtctc cggagtcacc cgtgcccgcg
     1441 ctctccacgc tgcgcatcaa gtctgagaat ggcgagcagg ccttcctgct gctgatgcgg
     1501 ccggaggaca cagtcggtga tgtgcgcacc ctgcttgcac aggccagggc cgtggaggcc
     1561 accaccttcg agatcttcag tacgttcccg cccacagtct accacaatga cgctctcacg
     1621 ctgcaggccg tgggcctggt gcccaacgcc acgctgctgc ttcgggcgcg ccgggctccg
     1681 ctgcccgccc ccggccccga ataaa
//
LOCUS       XM_032610156            1636 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X2, mRNA.
ACCESSION   XM_032610156
VERSION     XM_032610156.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1636
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742475"
     CDS             43..1635
                     /gene="UBXN11"
                     /codon_start=1
                     /product="UBX domain-containing protein 11 isoform X2"
                     /protein_id="XP_032466047.1"
                     /db_xref="GeneID:116742475"
                     /translation="MLLPCLPQAQTFASQPSFSPHRGAGIGHPGPPREPGWENSKKRP
                     VLVGSLLSSVPSFLSSYAGGTENRPLHLDQGPGPPFRLGFSPRAVTWASLSAEDEVDM
                     LNDAHGSEERISVPSCHGGIGAPVTRQVPVYHDSELMATMARKVRDLERQVKAQADEM
                     LSKDQKIRALEELVETLQEHQGTVTLQRQEELETTCAQLQRQVGEMERFLGDYGLQWV
                     GEPMHEEDSEDGERDWMTAKKFWKPGDSLVPPEVDFDRLLASLKDLSELAVDSDTQQS
                     PMPSRVPHGVLEPIPLELYRNGIVMFDGPFRPFHDPSTQRCLRDILDGFFPSELQRLY
                     PDGVPFKVSDLRNQVYPENGLDPFPGEGRVVGWQRIRKPLDRMEHPGSRMIAEKFLNR
                     LPKLVIRQGEVIDIRGPIRDTLKIQEIVVETPALAAERERSQESPESPVPALSTLRIK
                     SENGEQAFLLLMRPEDTVGDVRTLLAQARAVEATTFEIFSTFPPTVYHNDALTLQAVG
                     LVPNATLLLRARRAPLPAPGPE"
     misc_feature    <424..>888
                     /gene="UBXN11"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    916..1131
                     /gene="UBXN11"
                     /note="SEP domain; Region: SEP; pfam08059"
                     /db_xref="CDD:462348"
     misc_feature    1372..1596
                     /gene="UBXN11"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 11 (UBXN11) and similar proteins; Region:
                     UBX_UBXN11; cd17077"
                     /db_xref="CDD:340597"
     misc_feature    order(1378..1380,1384..1386,1390..1395,1402..1407,
                     1411..1413,1510..1515,1519..1521,1573..1584,1588..1590,
                     1594..1596)
                     /gene="UBXN11"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340597"
ORIGIN      
        1 ctgcagcccg ttacagcctt ttctccctga agcccagtcc tcatgttgct gccctgcctc
       61 ccgcaggctc agacctttgc atcccagccc tcctttagcc cccaccgcgg tgccggcatt
      121 ggccacccag gtccccccag ggagccaggt tgggagaact ccaagaagag gcctgttctg
      181 gttggatcct tgctctccag cgtcccaagt tttctatcct catatgctgg ggggacagag
      241 aacaggccac ttcatcttga ccagggccca gggcccccgt ttcgcctggg cttcagcccc
      301 agagcagtga cctgggcatc cctgtctgca gaagatgagg tggacatgct gaatgacgcg
      361 cacggctcag aagaaaggat ctctgttcct tcctgccatg gtggcatagg tgcccctgtg
      421 actaggcaag tccctgtgta ccacgactcg gagttgatgg ccaccatggc gaggaaagtg
      481 cgggatctgg agcggcaggt gaaggcccag gcggatgaga tgctctccaa ggatcagaag
      541 atacgggcct tggaggagct ggtggagacc ctccaggagc accagggcac ggtgaccctg
      601 cagcggcagg aggagctgga gaccacatgc gcgcagctgc agcggcaggt cggggagatg
      661 gagcggttcc tcggtgacta cggcctgcag tgggtgggtg agcccatgca tgaggaggac
      721 tcggaggatg gcgagaggga ctggatgaca gccaagaagt tctggaagcc aggagactca
      781 ctggtacccc ccgaggtaga ctttgacagg ctgctggcta gcctgaagga tctcagtgag
      841 ctggcggtag acagtgacac ccagcaatca ccaatgccca gcagagtgcc acacggtgtc
      901 cttgagccca tcccactgga gctctaccgg aatggcatcg tgatgttcga tgggcccttc
      961 cggcccttcc acgatccctc cacacagcgc tgcctccgag acatattgga tggcttcttc
     1021 ccgtcagagc tccagcggct gtaccctgac ggggtcccct ttaaggtgag tgacctgcgc
     1081 aatcaggtct acccagagaa tgggctggac ccgttcccag gcgagggccg agtggtaggc
     1141 tggcagagga ttcgaaagcc cttggacagg atggagcacc caggctccag gatgatcgcc
     1201 gagaagtttc tgaacaggct gcccaaatta gtgatccgac aaggcgaggt gattgacatt
     1261 cgaggcccca tccgggacac cctgaagatc caggagatcg tggtggagac gcctgccttg
     1321 gctgctgagc gtgagaggag ccaggagtct ccggagtcac ccgtgcccgc gctctccacg
     1381 ctgcgcatca agtctgagaa tggcgagcag gccttcctgc tgctgatgcg gccggaggac
     1441 acagtcggtg atgtgcgcac cctgcttgca caggccaggg ccgtggaggc caccaccttc
     1501 gagatcttca gtacgttccc gcccacagtc taccacaatg acgctctcac gctgcaggcc
     1561 gtgggcctgg tgcccaacgc cacgctgctg cttcgggcgc gccgggctcc gctgcccgcc
     1621 cccggccccg aataaa
//
LOCUS       XM_032610164            2236 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X3, mRNA.
ACCESSION   XM_032610164
VERSION     XM_032610164.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2236
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742475"
     CDS             763..2235
                     /gene="UBXN11"
                     /codon_start=1
                     /product="UBX domain-containing protein 11 isoform X3"
                     /protein_id="XP_032466055.1"
                     /db_xref="GeneID:116742475"
                     /translation="MSSPLASLGKTRRVPLHSEPVNQGRRGIKMYGNEDEVDMLNDAH
                     GSEERISVPSCHGGIGAPVTRQVPVYHDSELMATMARKVRDLERQVKAQADEMLSKDQ
                     KIRALEELVETLQEHQGTVTLQRQEELETTCAQLQRQVGEMERFLGDYGLQWVGEPMH
                     EEDSEDGERDWMTAKKFWKPAFACGAGTGLLAHVGHCRDFTAAGDSLVPPEVDFDRLL
                     ASLKDLSELAVDSDTQQSPMPSRVPHGVLEPIPLELYRNGIVMFDGPFRPFHDPSTQR
                     CLRDILDGFFPSELQRLYPDGVPFKVSDLRNQVYPENGLDPFPGEGRVVGWQRIRKPL
                     DRMEHPGSRMIAEKFLNRLPKLVIRQGEVIDIRGPIRDTLKIQEIVVETPALAAERER
                     SQESPESPVPALSTLRIKSENGEQAFLLLMRPEDTVGDVRTLLAQARAVEATTFEIFS
                     TFPPTVYHNDALTLQAVGLVPNATLLLRARRAPLPAPGPE"
     misc_feature    <955..>1212
                     /gene="UBXN11"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    1516..1731
                     /gene="UBXN11"
                     /note="SEP domain; Region: SEP; pfam08059"
                     /db_xref="CDD:462348"
     misc_feature    1972..2196
                     /gene="UBXN11"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 11 (UBXN11) and similar proteins; Region:
                     UBX_UBXN11; cd17077"
                     /db_xref="CDD:340597"
     misc_feature    order(1978..1980,1984..1986,1990..1995,2002..2007,
                     2011..2013,2110..2115,2119..2121,2173..2184,2188..2190,
                     2194..2196)
                     /gene="UBXN11"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340597"
ORIGIN      
        1 ttcagattta agaaacattt attaagtact tgcatcattt ccattcatgc ttaaaagaac
       61 tgccccctta gtactgtacc gatcagatga aaaaacaggc tcagagggat aaatgtaatt
      121 tctcccaaaa tcaatctagc aaaacagtgg cattgtcggg attacacgtg caggtccaga
      181 agcttccagc agcttcgtga atcttatccc aggttctccg ctttctgtgc cttgggttga
      241 catgaacggg ccctccattt ctccagtccc cgagtccgct cagagcggtg gattctggga
      301 tttgcagtat ccagcgatga attgagactc cgtgggccaa tagaattcga gtacagacgg
      361 ctgtacccgc ctccgctgcc tgctggttgc tcagggacac ccctcgaatt agccaatgag
      421 aagcgcacgg atcctggtcg cctgggaaac cgtgtaacaa caagatggcg gcgccgcggg
      481 cggctctgca tccctgcgtg gtgagtcacg gccctagacc tttctgccca tggagccaca
      541 cacacacaca ggctggggcc ctcaccccga gaacctcgag gacacgcgag acccgcggcc
      601 cggctccccc agaagacccc cccgcgccct ggcagcagat tcgggccccc gcctaccatg
      661 gctacgcgtg gaggaaggga ggcggtgacg cggctcctag ggcgggactg gtggtagaag
      721 tcacgtggga gttcctgaca gctagagact agaagtagaa ttatgagctc acctttggcc
      781 tcccttggca agacccggcg agtgcctctg cattcggagc ctgtgaatca ggggaggcga
      841 gggataaaaa tgtacggaaa tgaagatgag gtggacatgc tgaatgacgc gcacggctca
      901 gaagaaagga tctctgttcc ttcctgccat ggtggcatag gtgcccctgt gactaggcaa
      961 gtccctgtgt accacgactc ggagttgatg gccaccatgg cgaggaaagt gcgggatctg
     1021 gagcggcagg tgaaggccca ggcggatgag atgctctcca aggatcagaa gatacgggcc
     1081 ttggaggagc tggtggagac cctccaggag caccagggca cggtgaccct gcagcggcag
     1141 gaggagctgg agaccacatg cgcgcagctg cagcggcagg tcggggagat ggagcggttc
     1201 ctcggtgact acggcctgca gtgggtgggt gagcccatgc atgaggagga ctcggaggat
     1261 ggcgagaggg actggatgac agccaagaag ttctggaagc cagccttcgc ctgcggtgct
     1321 gggacgggcc tgctggcgca cgtcggacac tgccgggatt tcacagcagc aggagactca
     1381 ctggtacccc ccgaggtaga ctttgacagg ctgctggcta gcctgaagga tctcagtgag
     1441 ctggcggtag acagtgacac ccagcaatca ccaatgccca gcagagtgcc acacggtgtc
     1501 cttgagccca tcccactgga gctctaccgg aatggcatcg tgatgttcga tgggcccttc
     1561 cggcccttcc acgatccctc cacacagcgc tgcctccgag acatattgga tggcttcttc
     1621 ccgtcagagc tccagcggct gtaccctgac ggggtcccct ttaaggtgag tgacctgcgc
     1681 aatcaggtct acccagagaa tgggctggac ccgttcccag gcgagggccg agtggtaggc
     1741 tggcagagga ttcgaaagcc cttggacagg atggagcacc caggctccag gatgatcgcc
     1801 gagaagtttc tgaacaggct gcccaaatta gtgatccgac aaggcgaggt gattgacatt
     1861 cgaggcccca tccgggacac cctgaagatc caggagatcg tggtggagac gcctgccttg
     1921 gctgctgagc gtgagaggag ccaggagtct ccggagtcac ccgtgcccgc gctctccacg
     1981 ctgcgcatca agtctgagaa tggcgagcag gccttcctgc tgctgatgcg gccggaggac
     2041 acagtcggtg atgtgcgcac cctgcttgca caggccaggg ccgtggaggc caccaccttc
     2101 gagatcttca gtacgttccc gcccacagtc taccacaatg acgctctcac gctgcaggcc
     2161 gtgggcctgg tgcccaacgc cacgctgctg cttcgggcgc gccgggctcc gctgcccgcc
     2221 cccggccccg aataaa
//
LOCUS       XM_032610171            2009 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X4, mRNA.
ACCESSION   XM_032610171
VERSION     XM_032610171.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2009
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742475"
     CDS             536..2008
                     /gene="UBXN11"
                     /codon_start=1
                     /product="UBX domain-containing protein 11 isoform X3"
                     /protein_id="XP_032466062.1"
                     /db_xref="GeneID:116742475"
                     /translation="MSSPLASLGKTRRVPLHSEPVNQGRRGIKMYGNEDEVDMLNDAH
                     GSEERISVPSCHGGIGAPVTRQVPVYHDSELMATMARKVRDLERQVKAQADEMLSKDQ
                     KIRALEELVETLQEHQGTVTLQRQEELETTCAQLQRQVGEMERFLGDYGLQWVGEPMH
                     EEDSEDGERDWMTAKKFWKPAFACGAGTGLLAHVGHCRDFTAAGDSLVPPEVDFDRLL
                     ASLKDLSELAVDSDTQQSPMPSRVPHGVLEPIPLELYRNGIVMFDGPFRPFHDPSTQR
                     CLRDILDGFFPSELQRLYPDGVPFKVSDLRNQVYPENGLDPFPGEGRVVGWQRIRKPL
                     DRMEHPGSRMIAEKFLNRLPKLVIRQGEVIDIRGPIRDTLKIQEIVVETPALAAERER
                     SQESPESPVPALSTLRIKSENGEQAFLLLMRPEDTVGDVRTLLAQARAVEATTFEIFS
                     TFPPTVYHNDALTLQAVGLVPNATLLLRARRAPLPAPGPE"
     misc_feature    <728..>985
                     /gene="UBXN11"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    1289..1504
                     /gene="UBXN11"
                     /note="SEP domain; Region: SEP; pfam08059"
                     /db_xref="CDD:462348"
     misc_feature    1745..1969
                     /gene="UBXN11"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 11 (UBXN11) and similar proteins; Region:
                     UBX_UBXN11; cd17077"
                     /db_xref="CDD:340597"
     misc_feature    order(1751..1753,1757..1759,1763..1768,1775..1780,
                     1784..1786,1883..1888,1892..1894,1946..1957,1961..1963,
                     1967..1969)
                     /gene="UBXN11"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340597"
ORIGIN      
        1 ttcagattta agaaacattt attaagtact tgcatcattt ccattcatgc ttaaaagaac
       61 tgccccctta gtactgtacc gatcagatga aaaaacaggc tcagagggat aaatgtaatt
      121 tctcccaaaa tcaatctagc aaaacagtgg cattgtcggg attacacgtg caggtccaga
      181 agcttccagc agcttcgtga atcttatccc aggttctccg ctttctgtgc cttgggttga
      241 catgaacggg ccctccattt ctccagtccc cgagtccgct cagagcggtg gattctggga
      301 tttgcagtat ccagcgatga attgagactc cgtgggccaa tagaattcga gtacagacgg
      361 ctgtacccgc ctccgctgcc tgctggttgc tcagggacac ccctcgaatt agccaatgag
      421 aagcgcacgg atcctggtcg cctgggaaac cgtgtaacaa caagatggcg gcgccgcggg
      481 cggctctgca tccctgcgtg ggagttcctg acagctagag actagaagta gaattatgag
      541 ctcacctttg gcctcccttg gcaagacccg gcgagtgcct ctgcattcgg agcctgtgaa
      601 tcaggggagg cgagggataa aaatgtacgg aaatgaagat gaggtggaca tgctgaatga
      661 cgcgcacggc tcagaagaaa ggatctctgt tccttcctgc catggtggca taggtgcccc
      721 tgtgactagg caagtccctg tgtaccacga ctcggagttg atggccacca tggcgaggaa
      781 agtgcgggat ctggagcggc aggtgaaggc ccaggcggat gagatgctct ccaaggatca
      841 gaagatacgg gccttggagg agctggtgga gaccctccag gagcaccagg gcacggtgac
      901 cctgcagcgg caggaggagc tggagaccac atgcgcgcag ctgcagcggc aggtcgggga
      961 gatggagcgg ttcctcggtg actacggcct gcagtgggtg ggtgagccca tgcatgagga
     1021 ggactcggag gatggcgaga gggactggat gacagccaag aagttctgga agccagcctt
     1081 cgcctgcggt gctgggacgg gcctgctggc gcacgtcgga cactgccggg atttcacagc
     1141 agcaggagac tcactggtac cccccgaggt agactttgac aggctgctgg ctagcctgaa
     1201 ggatctcagt gagctggcgg tagacagtga cacccagcaa tcaccaatgc ccagcagagt
     1261 gccacacggt gtccttgagc ccatcccact ggagctctac cggaatggca tcgtgatgtt
     1321 cgatgggccc ttccggccct tccacgatcc ctccacacag cgctgcctcc gagacatatt
     1381 ggatggcttc ttcccgtcag agctccagcg gctgtaccct gacggggtcc cctttaaggt
     1441 gagtgacctg cgcaatcagg tctacccaga gaatgggctg gacccgttcc caggcgaggg
     1501 ccgagtggta ggctggcaga ggattcgaaa gcccttggac aggatggagc acccaggctc
     1561 caggatgatc gccgagaagt ttctgaacag gctgcccaaa ttagtgatcc gacaaggcga
     1621 ggtgattgac attcgaggcc ccatccggga caccctgaag atccaggaga tcgtggtgga
     1681 gacgcctgcc ttggctgctg agcgtgagag gagccaggag tctccggagt cacccgtgcc
     1741 cgcgctctcc acgctgcgca tcaagtctga gaatggcgag caggccttcc tgctgctgat
     1801 gcggccggag gacacagtcg gtgatgtgcg caccctgctt gcacaggcca gggccgtgga
     1861 ggccaccacc ttcgagatct tcagtacgtt cccgcccaca gtctaccaca atgacgctct
     1921 cacgctgcag gccgtgggcc tggtgcccaa cgccacgctg ctgcttcggg cgcgccgggc
     1981 tccgctgccc gcccccggcc ccgaataaa
//
LOCUS       XM_032610178            2167 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X5, mRNA.
ACCESSION   XM_032610178
VERSION     XM_032610178.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2167
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742475"
     CDS             763..2166
                     /gene="UBXN11"
                     /codon_start=1
                     /product="UBX domain-containing protein 11 isoform X4"
                     /protein_id="XP_032466069.1"
                     /db_xref="GeneID:116742475"
                     /translation="MSSPLASLGKTRRVPLHSEPVNQGRRGIKMYGNEDEVDMLNDAH
                     GSEERISVPSCHGGIGAPVTRQVPVYHDSELMATMARKVRDLERQVKAQADEMLSKDQ
                     KIRALEELVETLQEHQGTVTLQRQEELETTCAQLQRQVGEMERFLGDYGLQWVGEPMH
                     EEDSEDGERDWMTAKKFWKPGDSLVPPEVDFDRLLASLKDLSELAVDSDTQQSPMPSR
                     VPHGVLEPIPLELYRNGIVMFDGPFRPFHDPSTQRCLRDILDGFFPSELQRLYPDGVP
                     FKVSDLRNQVYPENGLDPFPGEGRVVGWQRIRKPLDRMEHPGSRMIAEKFLNRLPKLV
                     IRQGEVIDIRGPIRDTLKIQEIVVETPALAAERERSQESPESPVPALSTLRIKSENGE
                     QAFLLLMRPEDTVGDVRTLLAQARAVEATTFEIFSTFPPTVYHNDALTLQAVGLVPNA
                     TLLLRARRAPLPAPGPE"
     misc_feature    <955..>1419
                     /gene="UBXN11"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    1447..1662
                     /gene="UBXN11"
                     /note="SEP domain; Region: SEP; pfam08059"
                     /db_xref="CDD:462348"
     misc_feature    1903..2127
                     /gene="UBXN11"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 11 (UBXN11) and similar proteins; Region:
                     UBX_UBXN11; cd17077"
                     /db_xref="CDD:340597"
     misc_feature    order(1909..1911,1915..1917,1921..1926,1933..1938,
                     1942..1944,2041..2046,2050..2052,2104..2115,2119..2121,
                     2125..2127)
                     /gene="UBXN11"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340597"
ORIGIN      
        1 ttcagattta agaaacattt attaagtact tgcatcattt ccattcatgc ttaaaagaac
       61 tgccccctta gtactgtacc gatcagatga aaaaacaggc tcagagggat aaatgtaatt
      121 tctcccaaaa tcaatctagc aaaacagtgg cattgtcggg attacacgtg caggtccaga
      181 agcttccagc agcttcgtga atcttatccc aggttctccg ctttctgtgc cttgggttga
      241 catgaacggg ccctccattt ctccagtccc cgagtccgct cagagcggtg gattctggga
      301 tttgcagtat ccagcgatga attgagactc cgtgggccaa tagaattcga gtacagacgg
      361 ctgtacccgc ctccgctgcc tgctggttgc tcagggacac ccctcgaatt agccaatgag
      421 aagcgcacgg atcctggtcg cctgggaaac cgtgtaacaa caagatggcg gcgccgcggg
      481 cggctctgca tccctgcgtg gtgagtcacg gccctagacc tttctgccca tggagccaca
      541 cacacacaca ggctggggcc ctcaccccga gaacctcgag gacacgcgag acccgcggcc
      601 cggctccccc agaagacccc cccgcgccct ggcagcagat tcgggccccc gcctaccatg
      661 gctacgcgtg gaggaaggga ggcggtgacg cggctcctag ggcgggactg gtggtagaag
      721 tcacgtggga gttcctgaca gctagagact agaagtagaa ttatgagctc acctttggcc
      781 tcccttggca agacccggcg agtgcctctg cattcggagc ctgtgaatca ggggaggcga
      841 gggataaaaa tgtacggaaa tgaagatgag gtggacatgc tgaatgacgc gcacggctca
      901 gaagaaagga tctctgttcc ttcctgccat ggtggcatag gtgcccctgt gactaggcaa
      961 gtccctgtgt accacgactc ggagttgatg gccaccatgg cgaggaaagt gcgggatctg
     1021 gagcggcagg tgaaggccca ggcggatgag atgctctcca aggatcagaa gatacgggcc
     1081 ttggaggagc tggtggagac cctccaggag caccagggca cggtgaccct gcagcggcag
     1141 gaggagctgg agaccacatg cgcgcagctg cagcggcagg tcggggagat ggagcggttc
     1201 ctcggtgact acggcctgca gtgggtgggt gagcccatgc atgaggagga ctcggaggat
     1261 ggcgagaggg actggatgac agccaagaag ttctggaagc caggagactc actggtaccc
     1321 cccgaggtag actttgacag gctgctggct agcctgaagg atctcagtga gctggcggta
     1381 gacagtgaca cccagcaatc accaatgccc agcagagtgc cacacggtgt ccttgagccc
     1441 atcccactgg agctctaccg gaatggcatc gtgatgttcg atgggccctt ccggcccttc
     1501 cacgatccct ccacacagcg ctgcctccga gacatattgg atggcttctt cccgtcagag
     1561 ctccagcggc tgtaccctga cggggtcccc tttaaggtga gtgacctgcg caatcaggtc
     1621 tacccagaga atgggctgga cccgttccca ggcgagggcc gagtggtagg ctggcagagg
     1681 attcgaaagc ccttggacag gatggagcac ccaggctcca ggatgatcgc cgagaagttt
     1741 ctgaacaggc tgcccaaatt agtgatccga caaggcgagg tgattgacat tcgaggcccc
     1801 atccgggaca ccctgaagat ccaggagatc gtggtggaga cgcctgcctt ggctgctgag
     1861 cgtgagagga gccaggagtc tccggagtca cccgtgcccg cgctctccac gctgcgcatc
     1921 aagtctgaga atggcgagca ggccttcctg ctgctgatgc ggccggagga cacagtcggt
     1981 gatgtgcgca ccctgcttgc acaggccagg gccgtggagg ccaccacctt cgagatcttc
     2041 agtacgttcc cgcccacagt ctaccacaat gacgctctca cgctgcaggc cgtgggcctg
     2101 gtgcccaacg ccacgctgct gcttcgggcg cgccgggctc cgctgcccgc ccccggcccc
     2161 gaataaa
//
LOCUS       XR_004346477            1611 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X6, misc_RNA.
ACCESSION   XR_004346477
VERSION     XR_004346477.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1611
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742475"
     misc_RNA        1..1611
                     /gene="UBXN11"
                     /product="UBX domain protein 11, transcript variant X6"
                     /db_xref="GeneID:116742475"
ORIGIN      
        1 ctgcagcccg ttacagcctt ttctccctga agcccagtcc tcatgttgct gccctgcctc
       61 ccgcaggctc agacctttgc atcccagccc tcctttagcc cccaccgcgg tgccggcatt
      121 ggccacccag gtccccccag ggagccaggt tgggagaact ccaagaagag gcctgttctg
      181 gttggatcct tgctctccag cgtcccaagt tttctatcct catatgctgg ggggacagag
      241 aacaggccac ttcatcttga ccagggccca gggcccccgt ttcgcctggg cttcagcccc
      301 agagcagtga cctgggcatc cctgtctgca gaagatgagg tggacatgct gaatgacgcg
      361 cacggctcag aagaaaggat ctctgttcct tcctgccatg gtggcatagg tgcccctgtg
      421 actaggcaag tccctgtgta ccacgactcg gagttgatgg ccaccatggc gaggaaagtg
      481 cgggatctgg agcggcaggt gaaggcccag gcggatgaga tgctctccaa ggatcagaag
      541 atacgggcct tggaggagct ggtggagacc ctccaggagc accagggcac ggtgaccctg
      601 cagcggcagg aggagctgga gaccacatgc gcgcagctgc agcggcaggt cggggagatg
      661 gagcggttcc tcggtgacta cggcctgcag tgggtgggtg agcccatgca tgaggaggac
      721 tcggaggatg gcgagaggga ctggatgaca gccaagaagt tctggaagcc agccttcgcc
      781 tgcggtgctg ggacgggcct gctggcgcac gtcggacact gccgggattt cacagcagca
      841 ggagactcac tggtaccccc cgaggtagac tttgacaggc tgctggctag cctgaaggat
      901 ctcagtgagc tggcggtaga cagtgacacc cagcaatcac caatgcccag cagagtgcca
      961 cacggtgtcc ttgagcccat cccactggag ctctaccgga atggcatcgt gatgttcgat
     1021 gggcccttcc ggcccttcca cgatccctcc acacagcgct gcctccgaga catattggat
     1081 ggcttcttcc cgtcagagct ccagcggctg taccctgacg gggtcccctt taaggtgagt
     1141 gacctgcgca atcaggtcta cccagagaat gggctggacc cgttcccagg cgagggccga
     1201 gtggtaggct ggcagaggat tcgaaagccc ttggacagga tggagcaccc aggctccagg
     1261 atgatcgccg agaagtttct gaacaggctg cccaaattag tgatccgaca aggcgaggtg
     1321 attgacattc gaggccccat ccgggacacc ctgaaggagc caggagtctc cggagtcacc
     1381 cgtgcccgcg ctctccacgc tgcgcatcaa gtctgagaat ggcgagcagg ccttcctgct
     1441 gctgatgcgg ccggaggaca cagtcggtga tgtgcgcacc ctgcttgcac aggccagggc
     1501 cgtggaggcc accaccttcg agatcttcag tacgttcccg cccacagtct accacaatga
     1561 cgctctcacg ctgcaggccg tgggcctggt gcccaacgcc acgctgctgc t
//
LOCUS       XM_032610189            1570 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X7, mRNA.
ACCESSION   XM_032610189
VERSION     XM_032610189.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1570
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116742475"
     CDS             43..1332
                     /gene="UBXN11"
                     /codon_start=1
                     /product="UBX domain-containing protein 11 isoform X5"
                     /protein_id="XP_032466080.1"
                     /db_xref="GeneID:116742475"
                     /translation="MLLPCLPQAQTFASQPSFSPHRGAGIGHPGPPREPGWENSKKRP
                     VLVGSLLSSVPSFLSSYAGGTENRPLHLDQGPGPPFRLGFSPRAVTWASLSAEDEVDM
                     LNDAHGSEERISVPSCHGGIGAPVTRQVPVYHDSELMATMARKVRDLERQVKAQADEM
                     LSKDQKIRALEELVETLQEHQGTVTLQRQEELETTCAQLQRQVGEMERFLGDYGLQWV
                     GEPMHEEDSEDGERDWMTAKKFWKPAFACGAGTGLLAHVGHCRDFTAAGDSLVPPEVD
                     FDRLLASLKDLSELAVDSDTQQSPMPSRVPHGVLEPIPLELYRNGIVMFDGPFRPFHD
                     PSTQRCLRDILDGFFPSELQRLYPDGVPFKHSGHLDSLGNVRSPRKTALAPPRGSWSL
                     LVGVEGSAIGGQTLGLKDLRWSRPPAVGAVGSEMRVL"
     misc_feature    <424..>732
                     /gene="UBXN11"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    985..>1134
                     /gene="UBXN11"
                     /note="SEP domain; Region: SEP; pfam08059"
                     /db_xref="CDD:462348"
ORIGIN      
        1 ctgcagcccg ttacagcctt ttctccctga agcccagtcc tcatgttgct gccctgcctc
       61 ccgcaggctc agacctttgc atcccagccc tcctttagcc cccaccgcgg tgccggcatt
      121 ggccacccag gtccccccag ggagccaggt tgggagaact ccaagaagag gcctgttctg
      181 gttggatcct tgctctccag cgtcccaagt tttctatcct catatgctgg ggggacagag
      241 aacaggccac ttcatcttga ccagggccca gggcccccgt ttcgcctggg cttcagcccc
      301 agagcagtga cctgggcatc cctgtctgca gaagatgagg tggacatgct gaatgacgcg
      361 cacggctcag aagaaaggat ctctgttcct tcctgccatg gtggcatagg tgcccctgtg
      421 actaggcaag tccctgtgta ccacgactcg gagttgatgg ccaccatggc gaggaaagtg
      481 cgggatctgg agcggcaggt gaaggcccag gcggatgaga tgctctccaa ggatcagaag
      541 atacgggcct tggaggagct ggtggagacc ctccaggagc accagggcac ggtgaccctg
      601 cagcggcagg aggagctgga gaccacatgc gcgcagctgc agcggcaggt cggggagatg
      661 gagcggttcc tcggtgacta cggcctgcag tgggtgggtg agcccatgca tgaggaggac
      721 tcggaggatg gcgagaggga ctggatgaca gccaagaagt tctggaagcc agccttcgcc
      781 tgcggtgctg ggacgggcct gctggcgcac gtcggacact gccgggattt cacagcagca
      841 ggagactcac tggtaccccc cgaggtagac tttgacaggc tgctggctag cctgaaggat
      901 ctcagtgagc tggcggtaga cagtgacacc cagcaatcac caatgcccag cagagtgcca
      961 cacggtgtcc ttgagcccat cccactggag ctctaccgga atggcatcgt gatgttcgat
     1021 gggcccttcc ggcccttcca cgatccctcc acacagcgct gcctccgaga catattggat
     1081 ggcttcttcc cgtcagagct ccagcggctg taccctgacg gggtcccctt taagcattca
     1141 ggacacctgg acagcctggg gaacgtgagg agtccacgca aaactgccct ggctcccccc
     1201 agaggctcct ggagcctcct cgttggggtg gaaggtagtg ccattggggg gcaaacgttg
     1261 ggactaaagg acttgagatg gagccggccc cctgctgtgg gggcagtcgg cagtgagatg
     1321 agggtgctgt gatgggagca catgaggctg tgtcccagag ggtggtgcgt tagttccaca
     1381 gtgagagcat gtgagggggt gtgtgccacc atggcttgga aaatagcgtg agtcacgacc
     1441 aggggtgttt gaggtagttc atgccaagca gggctttgcc ctctcctaac atcctcatcc
     1501 ctcccctcct ggtctgctcc cgagagggac tctgaagagg atgtcagtac tgtggctcca
     1561 gctggagtga
//
LOCUS       XM_032610198            1225 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X8, mRNA.
ACCESSION   XM_032610198
VERSION     XM_032610198.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1225
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742475"
     CDS             43..1224
                     /gene="UBXN11"
                     /codon_start=1
                     /product="UBX domain-containing protein 11 isoform X6"
                     /protein_id="XP_032466089.1"
                     /db_xref="GeneID:116742475"
                     /translation="MLLPCLPQAQTFASQPSFSPHRGAGIGHPGPPREPGWENSKKRP
                     VLVGSLLSSVPSFLSSYAGGTENRPLHLDQGPGPPFRLGFSPRAVTWASLSAEDEVDM
                     LNDAHGSEERISVPSCHGGIGAPVTRQVPVYHDSELMATMARKVRDLERQVKAQADEM
                     LSKDQKIRALEELVETLQEHQGTVTLQRQEELETTCAQLQRQVGEMERFLGDYGLQWV
                     GEPMHEEDSEDGERDWMTAKKFWKPGSRMIAEKFLNRLPKLVIRQGEVIDIRGPIRDT
                     LKIQEIVVETPALAAERERSQESPESPVPALSTLRIKSENGEQAFLLLMRPEDTVGDV
                     RTLLAQARAVEATTFEIFSTFPPTVYHNDALTLQAVGLVPNATLLLRARRAPLPAPGP
                     E"
     misc_feature    <424..>681
                     /gene="UBXN11"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    961..1185
                     /gene="UBXN11"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 11 (UBXN11) and similar proteins; Region:
                     UBX_UBXN11; cd17077"
                     /db_xref="CDD:340597"
     misc_feature    order(967..969,973..975,979..984,991..996,1000..1002,
                     1099..1104,1108..1110,1162..1173,1177..1179,1183..1185)
                     /gene="UBXN11"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340597"
ORIGIN      
        1 ctgcagcccg ttacagcctt ttctccctga agcccagtcc tcatgttgct gccctgcctc
       61 ccgcaggctc agacctttgc atcccagccc tcctttagcc cccaccgcgg tgccggcatt
      121 ggccacccag gtccccccag ggagccaggt tgggagaact ccaagaagag gcctgttctg
      181 gttggatcct tgctctccag cgtcccaagt tttctatcct catatgctgg ggggacagag
      241 aacaggccac ttcatcttga ccagggccca gggcccccgt ttcgcctggg cttcagcccc
      301 agagcagtga cctgggcatc cctgtctgca gaagatgagg tggacatgct gaatgacgcg
      361 cacggctcag aagaaaggat ctctgttcct tcctgccatg gtggcatagg tgcccctgtg
      421 actaggcaag tccctgtgta ccacgactcg gagttgatgg ccaccatggc gaggaaagtg
      481 cgggatctgg agcggcaggt gaaggcccag gcggatgaga tgctctccaa ggatcagaag
      541 atacgggcct tggaggagct ggtggagacc ctccaggagc accagggcac ggtgaccctg
      601 cagcggcagg aggagctgga gaccacatgc gcgcagctgc agcggcaggt cggggagatg
      661 gagcggttcc tcggtgacta cggcctgcag tgggtgggtg agcccatgca tgaggaggac
      721 tcggaggatg gcgagaggga ctggatgaca gccaagaagt tctggaagcc aggctccagg
      781 atgatcgccg agaagtttct gaacaggctg cccaaattag tgatccgaca aggcgaggtg
      841 attgacattc gaggccccat ccgggacacc ctgaagatcc aggagatcgt ggtggagacg
      901 cctgccttgg ctgctgagcg tgagaggagc caggagtctc cggagtcacc cgtgcccgcg
      961 ctctccacgc tgcgcatcaa gtctgagaat ggcgagcagg ccttcctgct gctgatgcgg
     1021 ccggaggaca cagtcggtga tgtgcgcacc ctgcttgcac aggccagggc cgtggaggcc
     1081 accaccttcg agatcttcag tacgttcccg cccacagtct accacaatga cgctctcacg
     1141 ctgcaggccg tgggcctggt gcccaacgcc acgctgctgc ttcgggcgcg ccgggctccg
     1201 ctgcccgccc ccggccccga ataaa
//
LOCUS       XM_032610207            2191 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 11 (UBXN11),
            transcript variant X9, mRNA.
ACCESSION   XM_032610207
VERSION     XM_032610207.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2191
                     /gene="UBXN11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 97% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116742475"
     CDS             763..2190
                     /gene="UBXN11"
                     /codon_start=1
                     /product="UBX domain-containing protein 11 isoform X7"
                     /protein_id="XP_032466098.1"
                     /db_xref="GeneID:116742475"
                     /translation="MSSPLASLGKTRRVPLHSEPVNQGRRGIKMYGNEDEVDMLNDAH
                     GSEERISVPSCHGGIGAPVTRQVPVYHDSELMATMARKVRDLERQVKAQADEMLSKDQ
                     KIRALEELVETLQEHQGTVTLQRQEELETTCAQLQRQVGEMERFLGDYGLQWVGEPMH
                     EEDSEDGERDWMTAKKFWKPGDSLVPPEVDFDRLLASLKDLSELAVDSDTQQSPMPSR
                     VPHGVLEPIPLELYRNGIVMFDGPFRPFHDPSTQRCLRDILDGFFPSELQRLYPDGVP
                     FKVSDLRNQVYPENGLDPFPGEGRVVGWQRIRKPLDRMEHPGSRMIAEKFLNRLPKLV
                     IRQGEVIDIRGPIRDTLKNCCPLRVQIQEIVVETPALAAERERSQESPESPVPALSTL
                     RIKSENGEQAFLLLMRPEDTVGDVRTLLAQARAVEATTFEIFSTFPPTVYHNDALTLQ
                     AVGLVPNATLLLRARRAPLPAPGPE"
     misc_feature    <955..>1419
                     /gene="UBXN11"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
     misc_feature    1447..1662
                     /gene="UBXN11"
                     /note="SEP domain; Region: SEP; pfam08059"
                     /db_xref="CDD:462348"
     misc_feature    1927..2151
                     /gene="UBXN11"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 11 (UBXN11) and similar proteins; Region:
                     UBX_UBXN11; cd17077"
                     /db_xref="CDD:340597"
     misc_feature    order(1933..1935,1939..1941,1945..1950,1957..1962,
                     1966..1968,2065..2070,2074..2076,2128..2139,2143..2145,
                     2149..2151)
                     /gene="UBXN11"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340597"
ORIGIN      
        1 ttcagattta agaaacattt attaagtact tgcatcattt ccattcatgc ttaaaagaac
       61 tgccccctta gtactgtacc gatcagatga aaaaacaggc tcagagggat aaatgtaatt
      121 tctcccaaaa tcaatctagc aaaacagtgg cattgtcggg attacacgtg caggtccaga
      181 agcttccagc agcttcgtga atcttatccc aggttctccg ctttctgtgc cttgggttga
      241 catgaacggg ccctccattt ctccagtccc cgagtccgct cagagcggtg gattctggga
      301 tttgcagtat ccagcgatga attgagactc cgtgggccaa tagaattcga gtacagacgg
      361 ctgtacccgc ctccgctgcc tgctggttgc tcagggacac ccctcgaatt agccaatgag
      421 aagcgcacgg atcctggtcg cctgggaaac cgtgtaacaa caagatggcg gcgccgcggg
      481 cggctctgca tccctgcgtg gtgagtcacg gccctagacc tttctgccca tggagccaca
      541 cacacacaca ggctggggcc ctcaccccga gaacctcgag gacacgcgag acccgcggcc
      601 cggctccccc agaagacccc cccgcgccct ggcagcagat tcgggccccc gcctaccatg
      661 gctacgcgtg gaggaaggga ggcggtgacg cggctcctag ggcgggactg gtggtagaag
      721 tcacgtggga gttcctgaca gctagagact agaagtagaa ttatgagctc acctttggcc
      781 tcccttggca agacccggcg agtgcctctg cattcggagc ctgtgaatca ggggaggcga
      841 gggataaaaa tgtacggaaa tgaagatgag gtggacatgc tgaatgacgc gcacggctca
      901 gaagaaagga tctctgttcc ttcctgccat ggtggcatag gtgcccctgt gactaggcaa
      961 gtccctgtgt accacgactc ggagttgatg gccaccatgg cgaggaaagt gcgggatctg
     1021 gagcggcagg tgaaggccca ggcggatgag atgctctcca aggatcagaa gatacgggcc
     1081 ttggaggagc tggtggagac cctccaggag caccagggca cggtgaccct gcagcggcag
     1141 gaggagctgg agaccacatg cgcgcagctg cagcggcagg tcggggagat ggagcggttc
     1201 ctcggtgact acggcctgca gtgggtgggt gagcccatgc atgaggagga ctcggaggat
     1261 ggcgagaggg actggatgac agccaagaag ttctggaagc caggagactc actggtaccc
     1321 cccgaggtag actttgacag gctgctggct agcctgaagg atctcagtga gctggcggta
     1381 gacagtgaca cccagcaatc accaatgccc agcagagtgc cacacggtgt ccttgagccc
     1441 atcccactgg agctctaccg gaatggcatc gtgatgttcg atgggccctt ccggcccttc
     1501 cacgatccct ccacacagcg ctgcctccga gacatattgg atggcttctt cccgtcagag
     1561 ctccagcggc tgtaccctga cggggtcccc tttaaggtga gtgacctgcg caatcaggtc
     1621 tacccagaga atgggctgga cccgttccca ggcgagggcc gagtggtagg ctggcagagg
     1681 attcgaaagc ccttggacag gatggagcac ccaggctcca ggatgatcgc cgagaagttt
     1741 ctgaacaggc tgcccaaatt agtgatccga caaggcgagg tgattgacat tcgaggcccc
     1801 atccgggaca ccctgaagaa ctgctgccca ttgcgtgtac agatccagga gatcgtggtg
     1861 gagacgcctg ccttggctgc tgagcgtgag aggagccagg agtctccgga gtcacccgtg
     1921 cccgcgctct ccacgctgcg catcaagtct gagaatggcg agcaggcctt cctgctgctg
     1981 atgcggccgg aggacacagt cggtgatgtg cgcaccctgc ttgcacaggc cagggccgtg
     2041 gaggccacca ccttcgagat cttcagtacg ttcccgccca cagtctacca caatgacgct
     2101 ctcacgctgc aggccgtggg cctggtgccc aacgccacgc tgctgcttcg ggcgcgccgg
     2161 gctccgctgc ccgcccccgg ccccgaataa a
//
LOCUS       XM_032610220             849 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylacetamide deacetylase like 3
            (AADACL3), mRNA.
ACCESSION   XM_032610220
VERSION     XM_032610220.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..849
                     /gene="AADACL3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins"
                     /db_xref="GeneID:116742514"
     CDS             1..849
                     /gene="AADACL3"
                     /codon_start=1
                     /product="arylacetamide deacetylase-like 3"
                     /protein_id="XP_032466111.1"
                     /db_xref="GeneID:116742514"
                     /translation="MFQTFQTHHGLRSHLCKESESVVLAVGFRKMLKHRFPVIVRDFM
                     VATIHFLKSLNTCGADPAWVMVCGDSVGGGVATIVCQNLVDSSDLPRIRAQILIYAAL
                     QALDFRPPSYQQNKDVPLLRQNLAFCRWCGYLDISPSWKSTVLKRAHLPAKVWEKYRK
                     WLGSENIPEKFKKRGYTPHEPLNETAYLETNVILDLMNSPLIADDEVVSQLPRSCIVS
                     CEYDIFQDHSLLYKKRLEDLGVPVTWHHMEDGFHGMSVTLDLGCLYLPCSMRILNAAV
                     HFIKEL"
     misc_feature    10..759
                     /gene="AADACL3"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; Region:
                     alpha/beta hydrolases; cl21494"
                     /db_xref="CDD:473884"
ORIGIN      
        1 atgtttcaaa cctttcaaac tcaccatggc ttacgctctc atttgtgcaa ggagagtgaa
       61 tcagtggtcc tagcggttgg gttcagaaag atgctcaagc ataggtttcc ggtgatagta
      121 agagacttca tggtggctac catccacttc ttgaagtcct tgaatacatg tggggcagat
      181 ccagcctggg tcatggtctg tggtgacagt gtgggtgggg gcgtggcaac aatagtttgt
      241 caaaaccttg tggacagttc tgatctcccc aggatccgtg ctcagatcct gatctatgcc
      301 gctctccaag ccctggactt ccggcctcct tcttatcagc agaacaagga cgttccactg
      361 ctcaggcaga atttggcctt ctgccgttgg tgtggttacc tggacatcag cccctcctgg
      421 aaaagcaccg tattgaaaag agcccacttg cctgccaaag tctgggaaaa gtacagaaag
      481 tggttgggtt cagaaaacat tccagagaag tttaagaaga gaggctacac gccccatgag
      541 cccctgaatg aaactgccta tctggagaca aacgtcattc tagatttgat gaactcaccc
      601 ctgattgcag atgatgaagt agtgtctcag ctccccagat cttgcatcgt gagctgtgag
      661 tatgatattt tccaggacca ttcgctgttg tacaagaaga ggctggagga cctgggagtc
      721 ccagtgactt ggcaccacat ggaggatggt tttcacggga tgtcggtcac ccttgacctg
      781 ggctgcttgt acttgccctg ctccatgagg attctgaatg ctgcagtcca ttttataaaa
      841 gagttgtga
//
LOCUS       XM_032610229            4407 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium voltage-gated channel subfamily
            C member 4 (KCNC4), transcript variant X1, mRNA.
ACCESSION   XM_032610229
VERSION     XM_032610229.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4407
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4407
                     /gene="KCNC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 23 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742522"
     CDS             1194..3173
                     /gene="KCNC4"
                     /codon_start=1
                     /product="potassium voltage-gated channel subfamily C
                     member 4 isoform X1"
                     /protein_id="XP_032466120.1"
                     /db_xref="GeneID:116742522"
                     /translation="MISSVCVSSYRGRKSGNKPPSKTCLKEEMAKGEASEKIIINVGG
                     TRHETYRSTLRTLPGTRLAWLADPDGGGRPASDGGGAGSSGGGGCEFFFDRHPGVFAY
                     VLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEALDIFES
                     PDGGGGGAGPGDEAGDDERELALQRLGPHEGGAGPGAGSGGCRGWQPRMWALFEDPYS
                     SRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEIHRVGNTTSVRFRREVETEP
                     ILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSK
                     AARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIF
                     ATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVG
                     ALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKKHVPRPPQLESPIYCKSQ
                     ETSPRDSTYSDASPPAPEEGVVERKRADSKQNGDASAVLSDEEGAGLSQPLASARTPE
                     ERRALRRSGTRDRNKKAAACFLLSAGDFACADGSVRKGCEKSRSLNSTAGAAGTSLGL
                     SQLASRYSSPYPPRKLLLAHPFHALPSPPPGHSAL"
     misc_feature    1194..1280
                     /gene="KCNC4"
                     /note="Potassium voltage-gated channel; Region:
                     Potassium_chann; pfam11404"
                     /db_xref="CDD:431870"
     misc_feature    1296..1658
                     /gene="KCNC4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     Region: BTB_KCNC2_4; cd18415"
                     /db_xref="CDD:349722"
     misc_feature    order(1314..1316,1320..1343,1350..1352,1467..1469,
                     1473..1478,1485..1487,1494..1496,1506..1508,1515..1517,
                     1524..1526,1530..1532,1554..1559,1566..1568)
                     /gene="KCNC4"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:349722"
     misc_feature    1857..2633
                     /gene="KCNC4"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
ORIGIN      
        1 gcggcgttcg ctaccaacgc cggagggaga cggagagcac ccagagccgc agcccaccgg
       61 cgtggaggca acccccgacc ctaggccacc tctcgcccgc cccctgctgc gggccaaggc
      121 cagcgcccct cccggagatg ggtagacgcg tggatggcgt ggctctcagc cccgccagat
      181 cgcaggagcc aggcgccggg gcgttgcgct gaggctcccg cttgtcgcag cccaggaagc
      241 ctgcaggtgt ccttggccgc tcggccaccg cccgggagac tccttcgcag tgcccagagc
      301 cctgctcccg ggagctgccc cgcccccaag ctcggcgccg cgcaggacgc cccgtccgag
      361 gcccccccgc cccggcacgg cccccgcagc gcagcgccca gcgcggcgca gctccccgcc
      421 gctgtcgagc cgcggacgca ggaccagagg ctcgctcctg cgggcgcgct tgttttcctt
      481 gtgccgcctc gctctgcgca gcacccgccc gcccgaacgc cgcgttccgc tccgccccgc
      541 ccgccatccg tgccctgcgc tggatttatg aatgggggga agaggccaca tgccgccgcc
      601 gccgccttgt gttgaccgca cgcagcccgg gcccgcggag ctccggctgc cgtgagagcg
      661 ccggcccagc cccggcagcc gcttggagga cttgttgctg ctgcgttgct tccgccgccg
      721 ccgccgccgc agctcccggg tctcggcgcg gactggaagc cagagggtgg cccgtgtgag
      781 tgtgagcgcg cgcagtgcgc ctggacagtg cgcttccccg tctgttgggg ggtgcagggg
      841 ggtgtgtccc agtccccgag cgtctgggtg tccagtgcta gcgggggaag tgtgtgtgtg
      901 ctagccctga ctcccgggcg cctcgcttgg gtcctcggct ctccttttcc cctcctgcct
      961 ccctccccgg cgctgccagc ccaaaccgca accacctgtg cccgcgagaa atccaactcc
     1021 tcccgctccg cgccccgggg gggaggcagg ggcagggcca cgccgcagag ggggccgccg
     1081 cggcctcctg cctcctcctg gtctcctccc cctcccccgt ctgacgctgc ctcctctgga
     1141 agggtgtttg gagggcagcg gccgccccaa gccgaagccc cgcagcgctt cttatgatca
     1201 gctcggtgtg tgtctcctcc taccgcgggc gcaagtcggg gaacaagcct ccgtccaaaa
     1261 catgtctgaa ggaggagatg gccaagggcg aggcgtcgga gaagatcatc atcaacgtgg
     1321 gcggcacgcg acatgagacc taccgcagca ccctgcgcac cctaccgggc acccgcctcg
     1381 cctggctggc cgatcccgac ggcggaggcc ggcccgcgtc cgatggcggt ggtgcaggca
     1441 gcagcggcgg cggtggctgc gagttcttct tcgaccggca cccgggcgtc tttgcttacg
     1501 tgctcaacta ctaccgcacg ggcaagctgc actgccccgc cgacgtgtgc gggcctctgt
     1561 ttgaggagga gctcaccttc tggggcatcg acgagaccga cgtggagccc tgctgctgga
     1621 tgacctaccg gcagcaccgc gacgccgagg aggcgctcga catcttcgag agcccagacg
     1681 gaggcggcgg gggcgcgggg cccggcgacg aggctggcga cgatgagcgg gagctggccc
     1741 tgcagcgcct ggggccccac gagggaggtg cgggccctgg cgccgggtcc gggggctgcc
     1801 gcggctggca gccccgcatg tgggcgctct tcgaggatcc ctactcctcc cgggcggcca
     1861 gggtggtggc ctttgcctct ctcttcttca tcctggtgtc catcaccacc ttctgcctgg
     1921 agacgcacga ggccttcaac atcgaccgca acgtgacgga gatccacaga gtggggaata
     1981 ctaccagtgt gcgcttccgg cgggaggtgg aaacggagcc catcctgacc tacatcgagg
     2041 gagtgtgcgt actgtggttc acgctggagt tcctggtgcg catcgtgtgc tgccccgaca
     2101 cactggactt cgttaagaac ctgctcaaca tcatcgactt cgtggccatc ctgcccttct
     2161 acctggaggt ggggctgagc ggcctgtcgt ccaaggcggc tcgcgacgtg ctgggcttcc
     2221 tgcgcgtcgt gcgcttcgtg cgcatcctgc gcatcttcaa gcttacgcgc cacttcgtgg
     2281 ggctgcgcgt gctgggccac accctgcgcg ccagcaccaa cgagttcctg ctgctcatca
     2341 tcttcctggc cctgggcgtg cttatcttcg ccaccatgat ctactacgcg gagcgcatcg
     2401 gcgccaggcc ttccgacccg cggggcaatg atcacaccga cttcaagaac atccccatcg
     2461 gcttctggtg ggccgtggtc accatgacga cgctgggcta cggggacatg taccccaaga
     2521 cgtggtcagg catgctggtg ggggcgctgt gtgcactggc cggcgtgctc accattgcca
     2581 tgcccgtgcc tgtcattgtc aacaacttcg gcatgtacta ctctctggcc atggccaagc
     2641 agaagctgcc caagaaacgg aagaagcacg tacctcggcc gccccagctg gagtcgccca
     2701 tttactgcaa gtcgcaggag acctcgccca gggacagtac ctacagtgat gccagccccc
     2761 ctgccccaga agagggtgtg gttgagagga aacgggcaga ctccaagcag aacggcgatg
     2821 ccagcgcggt gctgtcagac gaggagggag ccggcctctc ccagcccctg gcctccgccc
     2881 gcaccccgga ggagcgccgg gccctgcgac gctccggcac ccgagacaga aacaaaaagg
     2941 cagctgcctg cttcctgctc agcgctgggg actttgcctg tgccgatggt agtgtccgga
     3001 aaggctgtga aaagtcccgg agtctaaaca gcacagcagg agctgctgga accagtctgg
     3061 ggctatctca actggcatcg cggtacagct caccctaccc tccaagaaag cttctgctcg
     3121 cccacccctt ccacgccctc cccagcccac cccctggaca ctcagccctg tagctgcacc
     3181 ctcggcccac cccgcccctg ggcgcacgcg cgcaaaacag gcacactcac atgcctccag
     3241 ccctcgtccc tcctgggcct gcgggagaca gcgggatgca ggagaactca ggcccccagg
     3301 cctctcctcc acagcaccca gctccccaaa atgtccagct ctggggcctg agagtgaggg
     3361 agagattact tgcaggcttt ctatcctgct cgctcccgtc ctgagctgag ggtgccgtca
     3421 ggtgccgcca cagctcagga ctgtgtctct gggccctgcc tcccccgcag ggtcccacct
     3481 agatcacagc aaatgcattt ccatccctcg gggccttcaa ccagtaacca aacagcctgc
     3541 aactgaacat ctctgtctgt ctgtctgtca atcccacacc cagaccggcc aggaataagg
     3601 ctgtcccctg gggcatctct gccggtgtgt gagggcttga ctccttgggg gagcggtgcc
     3661 acctgatgtt ctccagccct gccatggggt gcaggtggga gttcctagag tcagagccca
     3721 aggattggct gcgtaggcgc ggggatgtcc tcctctcggg gtggcgccca gcagcggagc
     3781 ccagcatccc atctgcaccc cgagctgcag tatcgcttgc cacgctgctt cctctgcttc
     3841 cccgacaatt cttcttcctc tgctgctccc tccaactctc agccctgcct ctgagtcacc
     3901 tgccgctccc acccagcctc tgtgctctgt atcgctgcca gaaccggaga ctcatctaat
     3961 ttctataatt aagtgtattc atttacctaa cgagccaggg agcacaacag gtctgtgagt
     4021 cattgagtga gcaggggtgc accctgggca ggggcagctg aggggaagtg tagggactga
     4081 agccatcctg cccccaccag ctccctgacc ggcagcctgc cgcgcccagg gtgtgccgag
     4141 ccgcaggggg cccctcccca gcgcaccagc caggctctcc gggacctcct cagcccagga
     4201 actcggaaca cctcagccaa ggcattgcct gtttcacctg atgggaatta gacctggcag
     4261 cggagccgtg tgcctggcaa tttttagagt cagattatgc aacttggtcg agggaatgac
     4321 taaggaaggt ccatgtctgc tccttccaga gtgggcagag ataggtaccg ccagacagca
     4381 tcttgggact tggcaggagg ctgggga
//
LOCUS       XM_032610239            4225 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium voltage-gated channel subfamily
            C member 4 (KCNC4), transcript variant X2, mRNA.
ACCESSION   XM_032610239
VERSION     XM_032610239.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4225
                     /gene="KCNC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 23 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742522"
     CDS             1194..3161
                     /gene="KCNC4"
                     /codon_start=1
                     /product="potassium voltage-gated channel subfamily C
                     member 4 isoform X2"
                     /protein_id="XP_032466130.1"
                     /db_xref="GeneID:116742522"
                     /translation="MISSVCVSSYRGRKSGNKPPSKTCLKEEMAKGEASEKIIINVGG
                     TRHETYRSTLRTLPGTRLAWLADPDGGGRPASDGGGAGSSGGGGCEFFFDRHPGVFAY
                     VLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEALDIFES
                     PDGGGGGAGPGDEAGDDERELALQRLGPHEGGAGPGAGSGGCRGWQPRMWALFEDPYS
                     SRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEIHRVGNTTSVRFRREVETEP
                     ILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSK
                     AARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIF
                     ATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVG
                     ALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKKHVPRPPQLESPIYCKSQ
                     ETSPRDSTYSDASPPAPEEGVVERKRADSKQNGDASAVLSDEEGAGLSQPLASARTPE
                     ERRALRRSGTRDRNKKAAACFLLSAGDFACADGSVRKGTGMLTAPPWWAQMSPGDMMQ
                     ECQAGAPSALGETCQDALSSNYAQAEVLTLS"
     misc_feature    1194..1280
                     /gene="KCNC4"
                     /note="Potassium voltage-gated channel; Region:
                     Potassium_chann; pfam11404"
                     /db_xref="CDD:431870"
     misc_feature    1296..1658
                     /gene="KCNC4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     Region: BTB_KCNC2_4; cd18415"
                     /db_xref="CDD:349722"
     misc_feature    order(1314..1316,1320..1343,1350..1352,1467..1469,
                     1473..1478,1485..1487,1494..1496,1506..1508,1515..1517,
                     1524..1526,1530..1532,1554..1559,1566..1568)
                     /gene="KCNC4"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:349722"
     misc_feature    1857..2633
                     /gene="KCNC4"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
ORIGIN      
        1 gcggcgttcg ctaccaacgc cggagggaga cggagagcac ccagagccgc agcccaccgg
       61 cgtggaggca acccccgacc ctaggccacc tctcgcccgc cccctgctgc gggccaaggc
      121 cagcgcccct cccggagatg ggtagacgcg tggatggcgt ggctctcagc cccgccagat
      181 cgcaggagcc aggcgccggg gcgttgcgct gaggctcccg cttgtcgcag cccaggaagc
      241 ctgcaggtgt ccttggccgc tcggccaccg cccgggagac tccttcgcag tgcccagagc
      301 cctgctcccg ggagctgccc cgcccccaag ctcggcgccg cgcaggacgc cccgtccgag
      361 gcccccccgc cccggcacgg cccccgcagc gcagcgccca gcgcggcgca gctccccgcc
      421 gctgtcgagc cgcggacgca ggaccagagg ctcgctcctg cgggcgcgct tgttttcctt
      481 gtgccgcctc gctctgcgca gcacccgccc gcccgaacgc cgcgttccgc tccgccccgc
      541 ccgccatccg tgccctgcgc tggatttatg aatgggggga agaggccaca tgccgccgcc
      601 gccgccttgt gttgaccgca cgcagcccgg gcccgcggag ctccggctgc cgtgagagcg
      661 ccggcccagc cccggcagcc gcttggagga cttgttgctg ctgcgttgct tccgccgccg
      721 ccgccgccgc agctcccggg tctcggcgcg gactggaagc cagagggtgg cccgtgtgag
      781 tgtgagcgcg cgcagtgcgc ctggacagtg cgcttccccg tctgttgggg ggtgcagggg
      841 ggtgtgtccc agtccccgag cgtctgggtg tccagtgcta gcgggggaag tgtgtgtgtg
      901 ctagccctga ctcccgggcg cctcgcttgg gtcctcggct ctccttttcc cctcctgcct
      961 ccctccccgg cgctgccagc ccaaaccgca accacctgtg cccgcgagaa atccaactcc
     1021 tcccgctccg cgccccgggg gggaggcagg ggcagggcca cgccgcagag ggggccgccg
     1081 cggcctcctg cctcctcctg gtctcctccc cctcccccgt ctgacgctgc ctcctctgga
     1141 agggtgtttg gagggcagcg gccgccccaa gccgaagccc cgcagcgctt cttatgatca
     1201 gctcggtgtg tgtctcctcc taccgcgggc gcaagtcggg gaacaagcct ccgtccaaaa
     1261 catgtctgaa ggaggagatg gccaagggcg aggcgtcgga gaagatcatc atcaacgtgg
     1321 gcggcacgcg acatgagacc taccgcagca ccctgcgcac cctaccgggc acccgcctcg
     1381 cctggctggc cgatcccgac ggcggaggcc ggcccgcgtc cgatggcggt ggtgcaggca
     1441 gcagcggcgg cggtggctgc gagttcttct tcgaccggca cccgggcgtc tttgcttacg
     1501 tgctcaacta ctaccgcacg ggcaagctgc actgccccgc cgacgtgtgc gggcctctgt
     1561 ttgaggagga gctcaccttc tggggcatcg acgagaccga cgtggagccc tgctgctgga
     1621 tgacctaccg gcagcaccgc gacgccgagg aggcgctcga catcttcgag agcccagacg
     1681 gaggcggcgg gggcgcgggg cccggcgacg aggctggcga cgatgagcgg gagctggccc
     1741 tgcagcgcct ggggccccac gagggaggtg cgggccctgg cgccgggtcc gggggctgcc
     1801 gcggctggca gccccgcatg tgggcgctct tcgaggatcc ctactcctcc cgggcggcca
     1861 gggtggtggc ctttgcctct ctcttcttca tcctggtgtc catcaccacc ttctgcctgg
     1921 agacgcacga ggccttcaac atcgaccgca acgtgacgga gatccacaga gtggggaata
     1981 ctaccagtgt gcgcttccgg cgggaggtgg aaacggagcc catcctgacc tacatcgagg
     2041 gagtgtgcgt actgtggttc acgctggagt tcctggtgcg catcgtgtgc tgccccgaca
     2101 cactggactt cgttaagaac ctgctcaaca tcatcgactt cgtggccatc ctgcccttct
     2161 acctggaggt ggggctgagc ggcctgtcgt ccaaggcggc tcgcgacgtg ctgggcttcc
     2221 tgcgcgtcgt gcgcttcgtg cgcatcctgc gcatcttcaa gcttacgcgc cacttcgtgg
     2281 ggctgcgcgt gctgggccac accctgcgcg ccagcaccaa cgagttcctg ctgctcatca
     2341 tcttcctggc cctgggcgtg cttatcttcg ccaccatgat ctactacgcg gagcgcatcg
     2401 gcgccaggcc ttccgacccg cggggcaatg atcacaccga cttcaagaac atccccatcg
     2461 gcttctggtg ggccgtggtc accatgacga cgctgggcta cggggacatg taccccaaga
     2521 cgtggtcagg catgctggtg ggggcgctgt gtgcactggc cggcgtgctc accattgcca
     2581 tgcccgtgcc tgtcattgtc aacaacttcg gcatgtacta ctctctggcc atggccaagc
     2641 agaagctgcc caagaaacgg aagaagcacg tacctcggcc gccccagctg gagtcgccca
     2701 tttactgcaa gtcgcaggag acctcgccca gggacagtac ctacagtgat gccagccccc
     2761 ctgccccaga agagggtgtg gttgagagga aacgggcaga ctccaagcag aacggcgatg
     2821 ccagcgcggt gctgtcagac gaggagggag ccggcctctc ccagcccctg gcctccgccc
     2881 gcaccccgga ggagcgccgg gccctgcgac gctccggcac ccgagacaga aacaaaaagg
     2941 cagctgcctg cttcctgctc agcgctgggg actttgcctg tgccgatggt agtgtccgga
     3001 aagggacggg catgctcacg gcacccccgt ggtgggcaca gatgtctccg ggcgacatga
     3061 tgcaggagtg ccaggctgga gcccctagtg ccttgggaga gacctgccaa gatgccctct
     3121 cgtccaacta tgcccaggct gaagtcctca ccctctctta aagcggcacc aacgtgagag
     3181 agacaggcag acagacagaa agccagaggc ttagggcagc tctggaaccc aggcaagaat
     3241 ctttcgctgg gaaagactca gatatccttg attgcacagg actgatggga aacctcccat
     3301 gtgaccctcg gggcccagag ccattgggtc tgatgttctt gttctgttgt acattgaaga
     3361 gatatatatg cacatatagt gtctatattc gtacatacta tactattgtg tgtagtgcat
     3421 gtgctcttgg tggtctgtct tcttcgttag gctgtgtctc cccaggccct cgccccaccc
     3481 ccaccctcac tcccttcccc ctcactgatt ccttgtttct gctgaatatg tgtgtggaat
     3541 atcccaggaa aagtgtacct gggaactgcc agtccagctg ggtggtcccc ggctagactc
     3601 tccctctcgg gagtgtttcc cctgtggtcc agaggcctgc ggaaggccag attgcccccc
     3661 tggggtcact gctccactag cctcacccca tcccagattg gggctctacc tcccacccca
     3721 cgccccagtt gttgggggac ttcccggggt tcctctgcac cttcttccac tcctttctcc
     3781 accttccctg tgtccttgac tgagggggtg tttcgtcttt ttttatttct ggttttttgt
     3841 cctgtcgcct tcgtccattt gtttccaaag atgctgctgg gcgggcgggc agggaagggg
     3901 tctgtctgcc catctggctc aggggtccgg gaagggaatg ctgcgggcga gcggagaccg
     3961 gctgcaatac agcacttcct ggctagtggc cagagtatgc gtgcaatagc cgaggccagg
     4021 tgcccccttc gatcttggcc tctgcccctg cgtcggcccg ccctccccac tcccagcccg
     4081 ccctgcccct ccctagtgtt ggtcgtcctt ttctaaagct gtcccctcgt gtgtctgagg
     4141 catgcctagg ctgggccctg ccgccctgtc tgcatgcctt tgactgtcat gctgtcaaag
     4201 ccccaataaa gacatctgga gcgtc
//
LOCUS       XM_032610244            4208 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium voltage-gated channel subfamily
            C member 4 (KCNC4), transcript variant X3, mRNA.
ACCESSION   XM_032610244
VERSION     XM_032610244.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4208
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4208
                     /gene="KCNC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 23 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742522"
     CDS             1194..3125
                     /gene="KCNC4"
                     /codon_start=1
                     /product="potassium voltage-gated channel subfamily C
                     member 4 isoform X3"
                     /protein_id="XP_032466135.1"
                     /db_xref="GeneID:116742522"
                     /translation="MISSVCVSSYRGRKSGNKPPSKTCLKEEMAKGEASEKIIINVGG
                     TRHETYRSTLRTLPGTRLAWLADPDGGGRPASDGGGAGSSGGGGCEFFFDRHPGVFAY
                     VLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEALDIFES
                     PDGGGGGAGPGDEAGDDERELALQRLGPHEGGAGPGAGSGGCRGWQPRMWALFEDPYS
                     SRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEIHRVGNTTSVRFRREVETEP
                     ILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSK
                     AARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIF
                     ATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVG
                     ALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKKHVPRPPQLESPIYCKSQ
                     ETSPRDSTYSDASPPAPEEGVVERKRADSKQNGDASAVLSDEEGAGLSQPLASARTPE
                     ERRALRRSGTRDRNKKAAACFLLSAGDFACADGSVRKEWAEIGTARQHLGTWQEAGDS
                     GGHPKRDLPRCPLVQLCPG"
     misc_feature    1194..1280
                     /gene="KCNC4"
                     /note="Potassium voltage-gated channel; Region:
                     Potassium_chann; pfam11404"
                     /db_xref="CDD:431870"
     misc_feature    1296..1658
                     /gene="KCNC4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     Region: BTB_KCNC2_4; cd18415"
                     /db_xref="CDD:349722"
     misc_feature    order(1314..1316,1320..1343,1350..1352,1467..1469,
                     1473..1478,1485..1487,1494..1496,1506..1508,1515..1517,
                     1524..1526,1530..1532,1554..1559,1566..1568)
                     /gene="KCNC4"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:349722"
     misc_feature    1857..2633
                     /gene="KCNC4"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
ORIGIN      
        1 gcggcgttcg ctaccaacgc cggagggaga cggagagcac ccagagccgc agcccaccgg
       61 cgtggaggca acccccgacc ctaggccacc tctcgcccgc cccctgctgc gggccaaggc
      121 cagcgcccct cccggagatg ggtagacgcg tggatggcgt ggctctcagc cccgccagat
      181 cgcaggagcc aggcgccggg gcgttgcgct gaggctcccg cttgtcgcag cccaggaagc
      241 ctgcaggtgt ccttggccgc tcggccaccg cccgggagac tccttcgcag tgcccagagc
      301 cctgctcccg ggagctgccc cgcccccaag ctcggcgccg cgcaggacgc cccgtccgag
      361 gcccccccgc cccggcacgg cccccgcagc gcagcgccca gcgcggcgca gctccccgcc
      421 gctgtcgagc cgcggacgca ggaccagagg ctcgctcctg cgggcgcgct tgttttcctt
      481 gtgccgcctc gctctgcgca gcacccgccc gcccgaacgc cgcgttccgc tccgccccgc
      541 ccgccatccg tgccctgcgc tggatttatg aatgggggga agaggccaca tgccgccgcc
      601 gccgccttgt gttgaccgca cgcagcccgg gcccgcggag ctccggctgc cgtgagagcg
      661 ccggcccagc cccggcagcc gcttggagga cttgttgctg ctgcgttgct tccgccgccg
      721 ccgccgccgc agctcccggg tctcggcgcg gactggaagc cagagggtgg cccgtgtgag
      781 tgtgagcgcg cgcagtgcgc ctggacagtg cgcttccccg tctgttgggg ggtgcagggg
      841 ggtgtgtccc agtccccgag cgtctgggtg tccagtgcta gcgggggaag tgtgtgtgtg
      901 ctagccctga ctcccgggcg cctcgcttgg gtcctcggct ctccttttcc cctcctgcct
      961 ccctccccgg cgctgccagc ccaaaccgca accacctgtg cccgcgagaa atccaactcc
     1021 tcccgctccg cgccccgggg gggaggcagg ggcagggcca cgccgcagag ggggccgccg
     1081 cggcctcctg cctcctcctg gtctcctccc cctcccccgt ctgacgctgc ctcctctgga
     1141 agggtgtttg gagggcagcg gccgccccaa gccgaagccc cgcagcgctt cttatgatca
     1201 gctcggtgtg tgtctcctcc taccgcgggc gcaagtcggg gaacaagcct ccgtccaaaa
     1261 catgtctgaa ggaggagatg gccaagggcg aggcgtcgga gaagatcatc atcaacgtgg
     1321 gcggcacgcg acatgagacc taccgcagca ccctgcgcac cctaccgggc acccgcctcg
     1381 cctggctggc cgatcccgac ggcggaggcc ggcccgcgtc cgatggcggt ggtgcaggca
     1441 gcagcggcgg cggtggctgc gagttcttct tcgaccggca cccgggcgtc tttgcttacg
     1501 tgctcaacta ctaccgcacg ggcaagctgc actgccccgc cgacgtgtgc gggcctctgt
     1561 ttgaggagga gctcaccttc tggggcatcg acgagaccga cgtggagccc tgctgctgga
     1621 tgacctaccg gcagcaccgc gacgccgagg aggcgctcga catcttcgag agcccagacg
     1681 gaggcggcgg gggcgcgggg cccggcgacg aggctggcga cgatgagcgg gagctggccc
     1741 tgcagcgcct ggggccccac gagggaggtg cgggccctgg cgccgggtcc gggggctgcc
     1801 gcggctggca gccccgcatg tgggcgctct tcgaggatcc ctactcctcc cgggcggcca
     1861 gggtggtggc ctttgcctct ctcttcttca tcctggtgtc catcaccacc ttctgcctgg
     1921 agacgcacga ggccttcaac atcgaccgca acgtgacgga gatccacaga gtggggaata
     1981 ctaccagtgt gcgcttccgg cgggaggtgg aaacggagcc catcctgacc tacatcgagg
     2041 gagtgtgcgt actgtggttc acgctggagt tcctggtgcg catcgtgtgc tgccccgaca
     2101 cactggactt cgttaagaac ctgctcaaca tcatcgactt cgtggccatc ctgcccttct
     2161 acctggaggt ggggctgagc ggcctgtcgt ccaaggcggc tcgcgacgtg ctgggcttcc
     2221 tgcgcgtcgt gcgcttcgtg cgcatcctgc gcatcttcaa gcttacgcgc cacttcgtgg
     2281 ggctgcgcgt gctgggccac accctgcgcg ccagcaccaa cgagttcctg ctgctcatca
     2341 tcttcctggc cctgggcgtg cttatcttcg ccaccatgat ctactacgcg gagcgcatcg
     2401 gcgccaggcc ttccgacccg cggggcaatg atcacaccga cttcaagaac atccccatcg
     2461 gcttctggtg ggccgtggtc accatgacga cgctgggcta cggggacatg taccccaaga
     2521 cgtggtcagg catgctggtg ggggcgctgt gtgcactggc cggcgtgctc accattgcca
     2581 tgcccgtgcc tgtcattgtc aacaacttcg gcatgtacta ctctctggcc atggccaagc
     2641 agaagctgcc caagaaacgg aagaagcacg tacctcggcc gccccagctg gagtcgccca
     2701 tttactgcaa gtcgcaggag acctcgccca gggacagtac ctacagtgat gccagccccc
     2761 ctgccccaga agagggtgtg gttgagagga aacgggcaga ctccaagcag aacggcgatg
     2821 ccagcgcggt gctgtcagac gaggagggag ccggcctctc ccagcccctg gcctccgccc
     2881 gcaccccgga ggagcgccgg gccctgcgac gctccggcac ccgagacaga aacaaaaagg
     2941 cagctgcctg cttcctgctc agcgctgggg actttgcctg tgccgatggt agtgtccgga
     3001 aagagtgggc agagataggt accgccagac agcatcttgg gacttggcag gaggctgggg
     3061 actctggagg ccaccccaaa agagacctgc caagatgccc tctcgtccaa ctatgcccag
     3121 gctgaagtcc tcaccctctc ttaaagcggc accaacgtga gagagacagg cagacagaca
     3181 gaaagccaga ggcttagggc agctctggaa cccaggcaag aatctttcgc tgggaaagac
     3241 tcagatatcc ttgattgcac aggactgatg ggaaacctcc catgtgaccc tcggggccca
     3301 gagccattgg gtctgatgtt cttgttctgt tgtacattga agagatatat atgcacatat
     3361 agtgtctata ttcgtacata ctatactatt gtgtgtagtg catgtgctct tggtggtctg
     3421 tcttcttcgt taggctgtgt ctccccaggc cctcgcccca cccccaccct cactcccttc
     3481 cccctcactg attccttgtt tctgctgaat atgtgtgtgg aatatcccag gaaaagtgta
     3541 cctgggaact gccagtccag ctgggtggtc cccggctaga ctctccctct cgggagtgtt
     3601 tcccctgtgg tccagaggcc tgcggaaggc cagattgccc ccctggggtc actgctccac
     3661 tagcctcacc ccatcccaga ttggggctct acctcccacc ccacgcccca gttgttgggg
     3721 gacttcccgg ggttcctctg caccttcttc cactcctttc tccaccttcc ctgtgtcctt
     3781 gactgagggg gtgtttcgtc tttttttatt tctggttttt tgtcctgtcg ccttcgtcca
     3841 tttgtttcca aagatgctgc tgggcgggcg ggcagggaag gggtctgtct gcccatctgg
     3901 ctcaggggtc cgggaaggga atgctgcggg cgagcggaga ccggctgcaa tacagcactt
     3961 cctggctagt ggccagagta tgcgtgcaat agccgaggcc aggtgccccc ttcgatcttg
     4021 gcctctgccc ctgcgtcggc ccgccctccc cactcccagc ccgccctgcc cctccctagt
     4081 gttggtcgtc cttttctaaa gctgtcccct cgtgtgtctg aggcatgcct aggctgggcc
     4141 ctgccgccct gtctgcatgc ctttgactgt catgctgtca aagccccaat aaagacatct
     4201 ggagcgtc
//
LOCUS       XM_032610247            4129 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium voltage-gated channel subfamily
            C member 4 (KCNC4), transcript variant X4, mRNA.
ACCESSION   XM_032610247
VERSION     XM_032610247.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4129
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4129
                     /gene="KCNC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 25 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742522"
     CDS             1194..3065
                     /gene="KCNC4"
                     /codon_start=1
                     /product="potassium voltage-gated channel subfamily C
                     member 4 isoform X4"
                     /protein_id="XP_032466138.1"
                     /db_xref="GeneID:116742522"
                     /translation="MISSVCVSSYRGRKSGNKPPSKTCLKEEMAKGEASEKIIINVGG
                     TRHETYRSTLRTLPGTRLAWLADPDGGGRPASDGGGAGSSGGGGCEFFFDRHPGVFAY
                     VLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEALDIFES
                     PDGGGGGAGPGDEAGDDERELALQRLGPHEGGAGPGAGSGGCRGWQPRMWALFEDPYS
                     SRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEIHRVGNTTSVRFRREVETEP
                     ILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSK
                     AARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIF
                     ATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVG
                     ALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKKHVPRPPQLESPIYCKSQ
                     ETSPRDSTYSDASPPAPEEGVVERKRADSKQNGDASAVLSDEEGAGLSQPLASARTPE
                     ERRALRRSGTRDRNKKAAACFLLSAGDFACADGSVRKETCQDALSSNYAQAEVLTLS"
     misc_feature    1194..1280
                     /gene="KCNC4"
                     /note="Potassium voltage-gated channel; Region:
                     Potassium_chann; pfam11404"
                     /db_xref="CDD:431870"
     misc_feature    1296..1658
                     /gene="KCNC4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     Region: BTB_KCNC2_4; cd18415"
                     /db_xref="CDD:349722"
     misc_feature    order(1314..1316,1320..1343,1350..1352,1467..1469,
                     1473..1478,1485..1487,1494..1496,1506..1508,1515..1517,
                     1524..1526,1530..1532,1554..1559,1566..1568)
                     /gene="KCNC4"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:349722"
     misc_feature    1857..2633
                     /gene="KCNC4"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
ORIGIN      
        1 gcggcgttcg ctaccaacgc cggagggaga cggagagcac ccagagccgc agcccaccgg
       61 cgtggaggca acccccgacc ctaggccacc tctcgcccgc cccctgctgc gggccaaggc
      121 cagcgcccct cccggagatg ggtagacgcg tggatggcgt ggctctcagc cccgccagat
      181 cgcaggagcc aggcgccggg gcgttgcgct gaggctcccg cttgtcgcag cccaggaagc
      241 ctgcaggtgt ccttggccgc tcggccaccg cccgggagac tccttcgcag tgcccagagc
      301 cctgctcccg ggagctgccc cgcccccaag ctcggcgccg cgcaggacgc cccgtccgag
      361 gcccccccgc cccggcacgg cccccgcagc gcagcgccca gcgcggcgca gctccccgcc
      421 gctgtcgagc cgcggacgca ggaccagagg ctcgctcctg cgggcgcgct tgttttcctt
      481 gtgccgcctc gctctgcgca gcacccgccc gcccgaacgc cgcgttccgc tccgccccgc
      541 ccgccatccg tgccctgcgc tggatttatg aatgggggga agaggccaca tgccgccgcc
      601 gccgccttgt gttgaccgca cgcagcccgg gcccgcggag ctccggctgc cgtgagagcg
      661 ccggcccagc cccggcagcc gcttggagga cttgttgctg ctgcgttgct tccgccgccg
      721 ccgccgccgc agctcccggg tctcggcgcg gactggaagc cagagggtgg cccgtgtgag
      781 tgtgagcgcg cgcagtgcgc ctggacagtg cgcttccccg tctgttgggg ggtgcagggg
      841 ggtgtgtccc agtccccgag cgtctgggtg tccagtgcta gcgggggaag tgtgtgtgtg
      901 ctagccctga ctcccgggcg cctcgcttgg gtcctcggct ctccttttcc cctcctgcct
      961 ccctccccgg cgctgccagc ccaaaccgca accacctgtg cccgcgagaa atccaactcc
     1021 tcccgctccg cgccccgggg gggaggcagg ggcagggcca cgccgcagag ggggccgccg
     1081 cggcctcctg cctcctcctg gtctcctccc cctcccccgt ctgacgctgc ctcctctgga
     1141 agggtgtttg gagggcagcg gccgccccaa gccgaagccc cgcagcgctt cttatgatca
     1201 gctcggtgtg tgtctcctcc taccgcgggc gcaagtcggg gaacaagcct ccgtccaaaa
     1261 catgtctgaa ggaggagatg gccaagggcg aggcgtcgga gaagatcatc atcaacgtgg
     1321 gcggcacgcg acatgagacc taccgcagca ccctgcgcac cctaccgggc acccgcctcg
     1381 cctggctggc cgatcccgac ggcggaggcc ggcccgcgtc cgatggcggt ggtgcaggca
     1441 gcagcggcgg cggtggctgc gagttcttct tcgaccggca cccgggcgtc tttgcttacg
     1501 tgctcaacta ctaccgcacg ggcaagctgc actgccccgc cgacgtgtgc gggcctctgt
     1561 ttgaggagga gctcaccttc tggggcatcg acgagaccga cgtggagccc tgctgctgga
     1621 tgacctaccg gcagcaccgc gacgccgagg aggcgctcga catcttcgag agcccagacg
     1681 gaggcggcgg gggcgcgggg cccggcgacg aggctggcga cgatgagcgg gagctggccc
     1741 tgcagcgcct ggggccccac gagggaggtg cgggccctgg cgccgggtcc gggggctgcc
     1801 gcggctggca gccccgcatg tgggcgctct tcgaggatcc ctactcctcc cgggcggcca
     1861 gggtggtggc ctttgcctct ctcttcttca tcctggtgtc catcaccacc ttctgcctgg
     1921 agacgcacga ggccttcaac atcgaccgca acgtgacgga gatccacaga gtggggaata
     1981 ctaccagtgt gcgcttccgg cgggaggtgg aaacggagcc catcctgacc tacatcgagg
     2041 gagtgtgcgt actgtggttc acgctggagt tcctggtgcg catcgtgtgc tgccccgaca
     2101 cactggactt cgttaagaac ctgctcaaca tcatcgactt cgtggccatc ctgcccttct
     2161 acctggaggt ggggctgagc ggcctgtcgt ccaaggcggc tcgcgacgtg ctgggcttcc
     2221 tgcgcgtcgt gcgcttcgtg cgcatcctgc gcatcttcaa gcttacgcgc cacttcgtgg
     2281 ggctgcgcgt gctgggccac accctgcgcg ccagcaccaa cgagttcctg ctgctcatca
     2341 tcttcctggc cctgggcgtg cttatcttcg ccaccatgat ctactacgcg gagcgcatcg
     2401 gcgccaggcc ttccgacccg cggggcaatg atcacaccga cttcaagaac atccccatcg
     2461 gcttctggtg ggccgtggtc accatgacga cgctgggcta cggggacatg taccccaaga
     2521 cgtggtcagg catgctggtg ggggcgctgt gtgcactggc cggcgtgctc accattgcca
     2581 tgcccgtgcc tgtcattgtc aacaacttcg gcatgtacta ctctctggcc atggccaagc
     2641 agaagctgcc caagaaacgg aagaagcacg tacctcggcc gccccagctg gagtcgccca
     2701 tttactgcaa gtcgcaggag acctcgccca gggacagtac ctacagtgat gccagccccc
     2761 ctgccccaga agagggtgtg gttgagagga aacgggcaga ctccaagcag aacggcgatg
     2821 ccagcgcggt gctgtcagac gaggagggag ccggcctctc ccagcccctg gcctccgccc
     2881 gcaccccgga ggagcgccgg gccctgcgac gctccggcac ccgagacaga aacaaaaagg
     2941 cagctgcctg cttcctgctc agcgctgggg actttgcctg tgccgatggt agtgtccgga
     3001 aagagacctg ccaagatgcc ctctcgtcca actatgccca ggctgaagtc ctcaccctct
     3061 cttaaagcgg caccaacgtg agagagacag gcagacagac agaaagccag aggcttaggg
     3121 cagctctgga acccaggcaa gaatctttcg ctgggaaaga ctcagatatc cttgattgca
     3181 caggactgat gggaaacctc ccatgtgacc ctcggggccc agagccattg ggtctgatgt
     3241 tcttgttctg ttgtacattg aagagatata tatgcacata tagtgtctat attcgtacat
     3301 actatactat tgtgtgtagt gcatgtgctc ttggtggtct gtcttcttcg ttaggctgtg
     3361 tctccccagg ccctcgcccc acccccaccc tcactccctt ccccctcact gattccttgt
     3421 ttctgctgaa tatgtgtgtg gaatatccca ggaaaagtgt acctgggaac tgccagtcca
     3481 gctgggtggt ccccggctag actctccctc tcgggagtgt ttcccctgtg gtccagaggc
     3541 ctgcggaagg ccagattgcc cccctggggt cactgctcca ctagcctcac cccatcccag
     3601 attggggctc tacctcccac cccacgcccc agttgttggg ggacttcccg gggttcctct
     3661 gcaccttctt ccactccttt ctccaccttc cctgtgtcct tgactgaggg ggtgtttcgt
     3721 ctttttttat ttctggtttt ttgtcctgtc gccttcgtcc atttgtttcc aaagatgctg
     3781 ctgggcgggc gggcagggaa ggggtctgtc tgcccatctg gctcaggggt ccgggaaggg
     3841 aatgctgcgg gcgagcggag accggctgca atacagcact tcctggctag tggccagagt
     3901 atgcgtgcaa tagccgaggc caggtgcccc cttcgatctt ggcctctgcc cctgcgtcgg
     3961 cccgccctcc ccactcccag cccgccctgc ccctccctag tgttggtcgt ccttttctaa
     4021 agctgtcccc tcgtgtgtct gaggcatgcc taggctgggc cctgccgccc tgtctgcatg
     4081 cctttgactg tcatgctgtc aaagccccaa taaagacatc tggagcgtc
//
LOCUS       XM_032610256            4191 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium voltage-gated channel subfamily
            C member 4 (KCNC4), transcript variant X5, mRNA.
ACCESSION   XM_032610256
VERSION     XM_032610256.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4191
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4191
                     /gene="KCNC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 26 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116742522"
     CDS             1194..3059
                     /gene="KCNC4"
                     /codon_start=1
                     /product="potassium voltage-gated channel subfamily C
                     member 4 isoform X5"
                     /protein_id="XP_032466147.1"
                     /db_xref="GeneID:116742522"
                     /translation="MISSVCVSSYRGRKSGNKPPSKTCLKEEMAKGEASEKIIINVGG
                     TRHETYRSTLRTLPGTRLAWLADPDGGGRPASDGGGAGSSGGGGCEFFFDRHPGVFAY
                     VLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEALDIFES
                     PDGGGGGAGPGDEAGDDERELALQRLGPHEGGAGPGAGSGGCRGWQPRMWALFEDPYS
                     SRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEIHRVGNTTSVRFRREVETEP
                     ILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSK
                     AARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIF
                     ATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVG
                     ALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKKHVPRPPQLESPIYCKSQ
                     ETSPRDSTYSDASPPAPEEGVVERKRADSKQNGDASAVLSDEEGAGLSQPLASARTPE
                     ERRALRRSGTRDRNKKAAACFLLSAGDFACADGSVRKEGNVEPKVCVQVSHTCAL"
     misc_feature    1194..1280
                     /gene="KCNC4"
                     /note="Potassium voltage-gated channel; Region:
                     Potassium_chann; pfam11404"
                     /db_xref="CDD:431870"
     misc_feature    1296..1658
                     /gene="KCNC4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     Region: BTB_KCNC2_4; cd18415"
                     /db_xref="CDD:349722"
     misc_feature    order(1314..1316,1320..1343,1350..1352,1467..1469,
                     1473..1478,1485..1487,1494..1496,1506..1508,1515..1517,
                     1524..1526,1530..1532,1554..1559,1566..1568)
                     /gene="KCNC4"
                     /note="putative tetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:349722"
     misc_feature    1857..2633
                     /gene="KCNC4"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
ORIGIN      
        1 gcggcgttcg ctaccaacgc cggagggaga cggagagcac ccagagccgc agcccaccgg
       61 cgtggaggca acccccgacc ctaggccacc tctcgcccgc cccctgctgc gggccaaggc
      121 cagcgcccct cccggagatg ggtagacgcg tggatggcgt ggctctcagc cccgccagat
      181 cgcaggagcc aggcgccggg gcgttgcgct gaggctcccg cttgtcgcag cccaggaagc
      241 ctgcaggtgt ccttggccgc tcggccaccg cccgggagac tccttcgcag tgcccagagc
      301 cctgctcccg ggagctgccc cgcccccaag ctcggcgccg cgcaggacgc cccgtccgag
      361 gcccccccgc cccggcacgg cccccgcagc gcagcgccca gcgcggcgca gctccccgcc
      421 gctgtcgagc cgcggacgca ggaccagagg ctcgctcctg cgggcgcgct tgttttcctt
      481 gtgccgcctc gctctgcgca gcacccgccc gcccgaacgc cgcgttccgc tccgccccgc
      541 ccgccatccg tgccctgcgc tggatttatg aatgggggga agaggccaca tgccgccgcc
      601 gccgccttgt gttgaccgca cgcagcccgg gcccgcggag ctccggctgc cgtgagagcg
      661 ccggcccagc cccggcagcc gcttggagga cttgttgctg ctgcgttgct tccgccgccg
      721 ccgccgccgc agctcccggg tctcggcgcg gactggaagc cagagggtgg cccgtgtgag
      781 tgtgagcgcg cgcagtgcgc ctggacagtg cgcttccccg tctgttgggg ggtgcagggg
      841 ggtgtgtccc agtccccgag cgtctgggtg tccagtgcta gcgggggaag tgtgtgtgtg
      901 ctagccctga ctcccgggcg cctcgcttgg gtcctcggct ctccttttcc cctcctgcct
      961 ccctccccgg cgctgccagc ccaaaccgca accacctgtg cccgcgagaa atccaactcc
     1021 tcccgctccg cgccccgggg gggaggcagg ggcagggcca cgccgcagag ggggccgccg
     1081 cggcctcctg cctcctcctg gtctcctccc cctcccccgt ctgacgctgc ctcctctgga
     1141 agggtgtttg gagggcagcg gccgccccaa gccgaagccc cgcagcgctt cttatgatca
     1201 gctcggtgtg tgtctcctcc taccgcgggc gcaagtcggg gaacaagcct ccgtccaaaa
     1261 catgtctgaa ggaggagatg gccaagggcg aggcgtcgga gaagatcatc atcaacgtgg
     1321 gcggcacgcg acatgagacc taccgcagca ccctgcgcac cctaccgggc acccgcctcg
     1381 cctggctggc cgatcccgac ggcggaggcc ggcccgcgtc cgatggcggt ggtgcaggca
     1441 gcagcggcgg cggtggctgc gagttcttct tcgaccggca cccgggcgtc tttgcttacg
     1501 tgctcaacta ctaccgcacg ggcaagctgc actgccccgc cgacgtgtgc gggcctctgt
     1561 ttgaggagga gctcaccttc tggggcatcg acgagaccga cgtggagccc tgctgctgga
     1621 tgacctaccg gcagcaccgc gacgccgagg aggcgctcga catcttcgag agcccagacg
     1681 gaggcggcgg gggcgcgggg cccggcgacg aggctggcga cgatgagcgg gagctggccc
     1741 tgcagcgcct ggggccccac gagggaggtg cgggccctgg cgccgggtcc gggggctgcc
     1801 gcggctggca gccccgcatg tgggcgctct tcgaggatcc ctactcctcc cgggcggcca
     1861 gggtggtggc ctttgcctct ctcttcttca tcctggtgtc catcaccacc ttctgcctgg
     1921 agacgcacga ggccttcaac atcgaccgca acgtgacgga gatccacaga gtggggaata
     1981 ctaccagtgt gcgcttccgg cgggaggtgg aaacggagcc catcctgacc tacatcgagg
     2041 gagtgtgcgt actgtggttc acgctggagt tcctggtgcg catcgtgtgc tgccccgaca
     2101 cactggactt cgttaagaac ctgctcaaca tcatcgactt cgtggccatc ctgcccttct
     2161 acctggaggt ggggctgagc ggcctgtcgt ccaaggcggc tcgcgacgtg ctgggcttcc
     2221 tgcgcgtcgt gcgcttcgtg cgcatcctgc gcatcttcaa gcttacgcgc cacttcgtgg
     2281 ggctgcgcgt gctgggccac accctgcgcg ccagcaccaa cgagttcctg ctgctcatca
     2341 tcttcctggc cctgggcgtg cttatcttcg ccaccatgat ctactacgcg gagcgcatcg
     2401 gcgccaggcc ttccgacccg cggggcaatg atcacaccga cttcaagaac atccccatcg
     2461 gcttctggtg ggccgtggtc accatgacga cgctgggcta cggggacatg taccccaaga
     2521 cgtggtcagg catgctggtg ggggcgctgt gtgcactggc cggcgtgctc accattgcca
     2581 tgcccgtgcc tgtcattgtc aacaacttcg gcatgtacta ctctctggcc atggccaagc
     2641 agaagctgcc caagaaacgg aagaagcacg tacctcggcc gccccagctg gagtcgccca
     2701 tttactgcaa gtcgcaggag acctcgccca gggacagtac ctacagtgat gccagccccc
     2761 ctgccccaga agagggtgtg gttgagagga aacgggcaga ctccaagcag aacggcgatg
     2821 ccagcgcggt gctgtcagac gaggagggag ccggcctctc ccagcccctg gcctccgccc
     2881 gcaccccgga ggagcgccgg gccctgcgac gctccggcac ccgagacaga aacaaaaagg
     2941 cagctgcctg cttcctgctc agcgctgggg actttgcctg tgccgatggt agtgtccgga
     3001 aagaaggcaa tgttgagccg aaagtgtgtg tccaagtgtc tcacacctgt gctctttaaa
     3061 cacagagacc tgccaagatg ccctctcgtc caactatgcc caggctgaag tcctcaccct
     3121 ctcttaaagc ggcaccaacg tgagagagac aggcagacag acagaaagcc agaggcttag
     3181 ggcagctctg gaacccaggc aagaatcttt cgctgggaaa gactcagata tccttgattg
     3241 cacaggactg atgggaaacc tcccatgtga ccctcggggc ccagagccat tgggtctgat
     3301 gttcttgttc tgttgtacat tgaagagata tatatgcaca tatagtgtct atattcgtac
     3361 atactatact attgtgtgta gtgcatgtgc tcttggtggt ctgtcttctt cgttaggctg
     3421 tgtctcccca ggccctcgcc ccacccccac cctcactccc ttccccctca ctgattcctt
     3481 gtttctgctg aatatgtgtg tggaatatcc caggaaaagt gtacctggga actgccagtc
     3541 cagctgggtg gtccccggct agactctccc tctcgggagt gtttcccctg tggtccagag
     3601 gcctgcggaa ggccagattg cccccctggg gtcactgctc cactagcctc accccatccc
     3661 agattggggc tctacctccc accccacgcc ccagttgttg ggggacttcc cggggttcct
     3721 ctgcaccttc ttccactcct ttctccacct tccctgtgtc cttgactgag ggggtgtttc
     3781 gtcttttttt atttctggtt ttttgtcctg tcgccttcgt ccatttgttt ccaaagatgc
     3841 tgctgggcgg gcgggcaggg aaggggtctg tctgcccatc tggctcaggg gtccgggaag
     3901 ggaatgctgc gggcgagcgg agaccggctg caatacagca cttcctggct agtggccaga
     3961 gtatgcgtgc aatagccgag gccaggtgcc cccttcgatc ttggcctctg cccctgcgtc
     4021 ggcccgccct ccccactccc agcccgccct gcccctccct agtgttggtc gtccttttct
     4081 aaagctgtcc cctcgtgtgt ctgaggcatg cctaggctgg gccctgccgc cctgtctgca
     4141 tgcctttgac tgtcatgctg tcaaagcccc aataaagaca tctggagcgt c
//
LOCUS       XM_032610266            4031 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proprotein convertase subtilisin/kexin
            type 9 (PCSK9), transcript variant X1, mRNA.
ACCESSION   XM_032610266
VERSION     XM_032610266.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4031
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4031
                     /gene="PCSK9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742546"
     CDS             268..2346
                     /gene="PCSK9"
                     /codon_start=1
                     /product="proprotein convertase subtilisin/kexin type 9
                     isoform X1"
                     /protein_id="XP_032466157.1"
                     /db_xref="GeneID:116742546"
                     /translation="MVTGSSRRPWWPPLLLLLLLLLGPAGARAQEDEDGDYEELVLAF
                     RSEEDSSADTAQNVAIATFHRCAKDAWRLPGTYMVVLKEETHRSQTERTARRLQAQAA
                     HRGYLTKILHVFHDLVPGFLVKMSSDLLELALTLPHVQYIEEDSFVFAQSVPWNLERI
                     LPARRQADEHHAPTGGGLVEVYLLDTSIQSGHREIEGRVVVTDFENVPEEDGTRFHRQ
                     ANKCDSHGTHLAGVVSGRDAGVAKGASLRSLRVLNCQGKGTVSSTLTGLEFIRKSQLA
                     QPAGRLVVLLPLAGGYSPALNAACQHLAGTGAVLVAAAGNFRDDACLYSPASAPEVIT
                     VGATNAQDQPVTLGVLGTNFGRCVDLFAPGDDIIGASSDCSTCFTSQSGTSQAAAHVA
                     GIVARMLTAEPELTLAELRQRLIRFSAKDVINEASFPEDQRVLTPNLVATLPPSTYGA
                     GGQLFCRTVWSAHSGPTRMATAEARCAAPEELLGCSSFSRSGKRRGERIEARGGRRVC
                     LAHNAFGGEGVYAIARCCLLPRANCRVHTAPPAGAGVQTQARCPQRGQVLTGCSSHWE
                     VEDLGTPSRPVLRPRGQPDQCVGHKEASIHASCCHAPGLECKVREHGILGPAEKVTVA
                     CEGGWTLTSCGTLPGACPALGAYAVDNTCVVRGRDIGAGGRTGEEATVAIAICCRSRP
                     SGEQASQEAQ"
     misc_feature    493..711
                     /gene="PCSK9"
                     /note="Peptidase inhibitor I9; Region: Inhibitor_I9;
                     pfam05922"
                     /db_xref="CDD:428674"
     misc_feature    730..1527
                     /gene="PCSK9"
                     /note="Peptidase S8 family domain in ProteinaseK-like
                     proteins; Region: Peptidases_S8_PCSK9_ProteinaseK_like;
                     cd04077"
                     /db_xref="CDD:173790"
     misc_feature    order(739..741,748..753)
                     /gene="PCSK9"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173790"
     misc_feature    order(820..822,940..942,1129..1134,1213..1215,1411..1413,
                     1420..1422)
                     /gene="PCSK9"
                     /note="active site"
                     /db_xref="CDD:173790"
     misc_feature    order(820..822,940..942,1420..1422)
                     /gene="PCSK9"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173790"
     misc_feature    order(1255..1257,1261..1263,1342..1344)
                     /gene="PCSK9"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173790"
     misc_feature    1618..2313
                     /gene="PCSK9"
                     /note="proprotein convertase subtilisin/kexin type 9,
                     C-terminal cysteine-rich domain (CRD); Region:
                     PCSK9_C-CRD; cd16839"
                     /db_xref="CDD:319350"
ORIGIN      
        1 gcgcgcggct gcaggcgggc tcaggctcag ctcgggtccg agccaggagg gacgagccag
       61 gcagtgagac ggcccgaggc cggcaggcgt ctcctcggcg cagccccgaa ccgggaggcc
      121 tggagcccgg cccagcgcgc gtccccgccg gggcccgagt cccgcgctcg catcgggttc
      181 cccgccgcga ggcacaggcg ctgcgggcct ggcccgcgcg ccgcccccgg gtctccctgc
      241 ccgacgcaaa cctctcctct ccccgcgatg gttacgggca gctcccggcg gccgtggtgg
      301 ccgccgctgc tgctgctcct gctgctgctc ctgggacccg cgggcgcccg cgcgcaggag
      361 gacgaagacg gcgactacga ggagctggtg ctcgccttcc ggtcggaaga ggacagctcg
      421 gctgacacgg cccagaacgt ggccatcgcc accttccacc gctgcgcaaa ggacgcctgg
      481 aggctgccag gaacctacat ggtggtgctg aaggaagaga cccaccgctc gcagacggag
      541 cgcaccgccc gccgcctgca ggcccaggcc gcccaccgcg gctacctcac caagatcctg
      601 cacgtcttcc acgaccttgt ccccggcttc ctggtgaaga tgagcagtga cctgctggag
      661 ctggccctga cattgcccca cgtccagtac atcgaggagg actccttcgt ctttgcccag
      721 agtgtcccgt ggaacttaga gcggattctc cctgcgcggc gccaggcgga tgaacaccat
      781 gctcctactg gaggtggcct ggtggaggta tatctcttag acaccagtat ccaaagtggc
      841 caccgggaaa ttgagggcag ggtggtagtc actgacttcg agaacgtgcc cgaagaggat
      901 gggacacgct tccacagaca ggcgaacaag tgtgacagcc atggcaccca cttggcaggg
      961 gtggtcagtg gccgggatgc tggcgtggcc aagggcgcca gcctgcgcag cctgcgtgtg
     1021 ctcaactgcc aagggaaggg cacggtgagc agcacactca caggcctgga gtttattcgg
     1081 aagagccagc tggcccagcc ggcgggccgg ttggtagtgc tgctgcccct ggcgggtggg
     1141 tacagcccgg ccctcaacgc cgcctgccag cacctggctg ggacgggggc agtgctggtg
     1201 gccgctgccg gcaacttcag ggatgacgcc tgtctctatt ccccggcctc agctcccgag
     1261 gtcattactg ttggggccac caatgcccag gaccagccgg tgaccctggg ggtcctgggg
     1321 accaactttg gccgctgcgt ggacctcttt gccccagggg acgacatcat cggtgcctcc
     1381 agtgactgca gcacctgctt cacatcacag agtgggacgt cacaggctgc cgcccatgtg
     1441 gctggcattg tggccaggat gctgaccgct gagccggagc tcaccctggc cgagctgagg
     1501 cagcggctga tccgcttctc tgccaaagac gtcatcaatg aggcctcgtt ccccgaggac
     1561 cagcgggtgc tgacccccaa cctggtggct acactacccc ccagcaccta tggagcaggt
     1621 gggcagctgt tctgcaggac cgtgtggtcg gcgcactcgg ggcccacgcg gatggccacg
     1681 gccgaggccc gctgtgctgc ccctgaggag ctgctgggct gctctagctt ctccaggagc
     1741 gggaagcggc ggggcgagcg cattgaggcc cgagggggca ggcgcgtctg cctggcccac
     1801 aacgcatttg ggggtgaggg tgtctacgcc attgccaggt gctgcctgct gccccgggcc
     1861 aactgccgtg tccacacggc tccgccagct ggggccggag tgcagaccca ggcccgctgc
     1921 ccccagcggg gccaagtcct cacaggctgc agctcccact gggaggtgga ggaccttggc
     1981 acccccagtc ggcctgtgct gaggccacgg ggtcagcccg accagtgtgt cggccacaag
     2041 gaggccagca tccacgcttc ctgctgtcat gcgccgggtc tggagtgcaa agtcagggag
     2101 cacgggatcc tgggccctgc agaaaaggtc accgtggcct gcgagggagg ctggacgctg
     2161 accagctgcg ggaccctccc cggggcctgc cccgccctgg gggcctacgc ggtggacaac
     2221 acgtgtgtgg tgaggggccg ggacatcgga gcaggaggca ggacgggcga ggaggccacc
     2281 gtagccatcg ccatctgctg ccggagccgg ccctcagggg agcaggcctc ccaggaggcc
     2341 cagtgaccgc cctgcccggg acgcatgcat ggggaagggg ccagggcctg gggccgtggt
     2401 cccaggcctc ggctgggctt tgaagtggtt cctccttccc ccttcctcag cctggacccc
     2461 agggaagagg atacctcttg cttctggagc tcgcgcgctg gcactcaggg tgcgctggct
     2521 ccccacctgg gagaacccca gctctcggcc tggatcaccc cttcccaggc ctgagctgca
     2581 tgggaggctg agtgagtagg gctgcaggtg ccaggcagtc cctccctcgc tgtggggctg
     2641 ggtccacatg ccaccgttaa cgctggtcag gctgtgccca gcttcctgcc agccgctccc
     2701 aagatgccaa cactgtgggt agaattactt ttattgagca gtcagtcttc aggcctccgt
     2761 gcaggaggtg gtcattctcc tgtgggtagg cagggaggcg cttgagggct ggaaggggcc
     2821 aaatattggt caggggaagt gaaaggtgga gatggcccct catctcctgc ccgctttagg
     2881 gacgccctgt tgggctcccg aattagtgga ggatcagttt tccatgcctc tgggggtgca
     2941 gggtggcact gacaaggggt gacgcttccc cacatgtggc caacgtttca aagtgtccaa
     3001 agggcttctc cacccacctt ctcacaagtt tcagagtagc cctggggcaa aggcaggccc
     3061 tatattcata cccactggat agatgaggat gttgaggccc gaagcacgag cccagggtca
     3121 gctgccaaga tgccttggtt caagtccttg ctctttagag agatctccat cagttcggtg
     3181 atctccacgg gccctcccag tcctgctgtt aagactcacc tcccgaagac agcttgttga
     3241 caaaattcct agctcttgta cccaccagcg gcatgacgga tgcagccaga tgtgtcccag
     3301 gtgatcacga ggccgtgcct ttgtttctcc cagctgccct cacctggcct ggtcccggct
     3361 ttgcagccca cctggcatca gcctgcaggg ggacatcacc ccgggatgac tcttcagttc
     3421 ccagtggggg cctcgtgctc catccaccct ctcaccccgt cctcgcacct accctgcaca
     3481 gcacacactg tcatccccac ttcagaagga gactgggaac caggggtggg ggttgggtgc
     3541 ccgccattca cacagccaag aagtgaggtg gtaccagggt ataaacccag atatgtccct
     3601 aaagccaagg ctctttttgc tgcaccaggt tgggcccccc catctttata ataacagagg
     3661 ctcattaggg aacacagacc tggggtagcc ctgtgagcaa ggacagaaga ctgggcaaaa
     3721 ggcactggcc gattcacggg gacctgagta gagagggctt tggagggatg cagggacgga
     3781 gggggaaggg gagaaggggg aggtgcaact ctccctcctt gagctcccct acccccagcc
     3841 ccacccaagc aaacaagcat gcatttatct ttttggtctg tctgtcaaca actctctgtt
     3901 gcctttttac agcaagcagc ttttctagat ctccgttttg cttttgtaac ttgaagatat
     3961 ttattctggg ttttgtagca tttttattat acagtgactt tttaaaataa aaacaacttg
     4021 tcgtgactct t
//
LOCUS       XM_032610271            3634 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proprotein convertase subtilisin/kexin
            type 9 (PCSK9), transcript variant X2, mRNA.
ACCESSION   XM_032610271
VERSION     XM_032610271.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3634
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3634
                     /gene="PCSK9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116742546"
     CDS             102..1949
                     /gene="PCSK9"
                     /codon_start=1
                     /product="proprotein convertase subtilisin/kexin type 9
                     isoform X2"
                     /protein_id="XP_032466162.1"
                     /db_xref="GeneID:116742546"
                     /translation="MVVLKEETHRSQTERTARRLQAQAAHRGYLTKILHVFHDLVPGF
                     LVKMSSDLLELALTLPHVQYIEEDSFVFAQSVPWNLERILPARRQADEHHAPTGGGLV
                     EVYLLDTSIQSGHREIEGRVVVTDFENVPEEDGTRFHRQANKCDSHGTHLAGVVSGRD
                     AGVAKGASLRSLRVLNCQGKGTVSSTLTGLEFIRKSQLAQPAGRLVVLLPLAGGYSPA
                     LNAACQHLAGTGAVLVAAAGNFRDDACLYSPASAPEVITVGATNAQDQPVTLGVLGTN
                     FGRCVDLFAPGDDIIGASSDCSTCFTSQSGTSQAAAHVAGIVARMLTAEPELTLAELR
                     QRLIRFSAKDVINEASFPEDQRVLTPNLVATLPPSTYGAGGQLFCRTVWSAHSGPTRM
                     ATAEARCAAPEELLGCSSFSRSGKRRGERIEARGGRRVCLAHNAFGGEGVYAIARCCL
                     LPRANCRVHTAPPAGAGVQTQARCPQRGQVLTGCSSHWEVEDLGTPSRPVLRPRGQPD
                     QCVGHKEASIHASCCHAPGLECKVREHGILGPAEKVTVACEGGWTLTSCGTLPGACPA
                     LGAYAVDNTCVVRGRDIGAGGRTGEEATVAIAICCRSRPSGEQASQEAQ"
     misc_feature    105..314
                     /gene="PCSK9"
                     /note="Peptidase inhibitor I9; Region: Inhibitor_I9;
                     pfam05922"
                     /db_xref="CDD:428674"
     misc_feature    333..1130
                     /gene="PCSK9"
                     /note="Peptidase S8 family domain in ProteinaseK-like
                     proteins; Region: Peptidases_S8_PCSK9_ProteinaseK_like;
                     cd04077"
                     /db_xref="CDD:173790"
     misc_feature    order(342..344,351..356)
                     /gene="PCSK9"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173790"
     misc_feature    order(423..425,543..545,732..737,816..818,1014..1016,
                     1023..1025)
                     /gene="PCSK9"
                     /note="active site"
                     /db_xref="CDD:173790"
     misc_feature    order(423..425,543..545,1023..1025)
                     /gene="PCSK9"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173790"
     misc_feature    order(858..860,864..866,945..947)
                     /gene="PCSK9"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173790"
     misc_feature    1221..1916
                     /gene="PCSK9"
                     /note="proprotein convertase subtilisin/kexin type 9,
                     C-terminal cysteine-rich domain (CRD); Region:
                     PCSK9_C-CRD; cd16839"
                     /db_xref="CDD:319350"
ORIGIN      
        1 accggcacgg cggctctttg gggtgcactc tgcgggggaa agatgcacgg ggctcggaga
       61 ctggtaggcg ccaggacgcc tggaggctgc caggaaccta catggtggtg ctgaaggaag
      121 agacccaccg ctcgcagacg gagcgcaccg cccgccgcct gcaggcccag gccgcccacc
      181 gcggctacct caccaagatc ctgcacgtct tccacgacct tgtccccggc ttcctggtga
      241 agatgagcag tgacctgctg gagctggccc tgacattgcc ccacgtccag tacatcgagg
      301 aggactcctt cgtctttgcc cagagtgtcc cgtggaactt agagcggatt ctccctgcgc
      361 ggcgccaggc ggatgaacac catgctccta ctggaggtgg cctggtggag gtatatctct
      421 tagacaccag tatccaaagt ggccaccggg aaattgaggg cagggtggta gtcactgact
      481 tcgagaacgt gcccgaagag gatgggacac gcttccacag acaggcgaac aagtgtgaca
      541 gccatggcac ccacttggca ggggtggtca gtggccggga tgctggcgtg gccaagggcg
      601 ccagcctgcg cagcctgcgt gtgctcaact gccaagggaa gggcacggtg agcagcacac
      661 tcacaggcct ggagtttatt cggaagagcc agctggccca gccggcgggc cggttggtag
      721 tgctgctgcc cctggcgggt gggtacagcc cggccctcaa cgccgcctgc cagcacctgg
      781 ctgggacggg ggcagtgctg gtggccgctg ccggcaactt cagggatgac gcctgtctct
      841 attccccggc ctcagctccc gaggtcatta ctgttggggc caccaatgcc caggaccagc
      901 cggtgaccct gggggtcctg gggaccaact ttggccgctg cgtggacctc tttgccccag
      961 gggacgacat catcggtgcc tccagtgact gcagcacctg cttcacatca cagagtggga
     1021 cgtcacaggc tgccgcccat gtggctggca ttgtggccag gatgctgacc gctgagccgg
     1081 agctcaccct ggccgagctg aggcagcggc tgatccgctt ctctgccaaa gacgtcatca
     1141 atgaggcctc gttccccgag gaccagcggg tgctgacccc caacctggtg gctacactac
     1201 cccccagcac ctatggagca ggtgggcagc tgttctgcag gaccgtgtgg tcggcgcact
     1261 cggggcccac gcggatggcc acggccgagg cccgctgtgc tgcccctgag gagctgctgg
     1321 gctgctctag cttctccagg agcgggaagc ggcggggcga gcgcattgag gcccgagggg
     1381 gcaggcgcgt ctgcctggcc cacaacgcat ttgggggtga gggtgtctac gccattgcca
     1441 ggtgctgcct gctgccccgg gccaactgcc gtgtccacac ggctccgcca gctggggccg
     1501 gagtgcagac ccaggcccgc tgcccccagc ggggccaagt cctcacaggc tgcagctccc
     1561 actgggaggt ggaggacctt ggcaccccca gtcggcctgt gctgaggcca cggggtcagc
     1621 ccgaccagtg tgtcggccac aaggaggcca gcatccacgc ttcctgctgt catgcgccgg
     1681 gtctggagtg caaagtcagg gagcacggga tcctgggccc tgcagaaaag gtcaccgtgg
     1741 cctgcgaggg aggctggacg ctgaccagct gcgggaccct ccccggggcc tgccccgccc
     1801 tgggggccta cgcggtggac aacacgtgtg tggtgagggg ccgggacatc ggagcaggag
     1861 gcaggacggg cgaggaggcc accgtagcca tcgccatctg ctgccggagc cggccctcag
     1921 gggagcaggc ctcccaggag gcccagtgac cgccctgccc gggacgcatg catggggaag
     1981 gggccagggc ctggggccgt ggtcccaggc ctcggctggg ctttgaagtg gttcctcctt
     2041 cccccttcct cagcctggac cccagggaag aggatacctc ttgcttctgg agctcgcgcg
     2101 ctggcactca gggtgcgctg gctccccacc tgggagaacc ccagctctcg gcctggatca
     2161 ccccttccca ggcctgagct gcatgggagg ctgagtgagt agggctgcag gtgccaggca
     2221 gtccctccct cgctgtgggg ctgggtccac atgccaccgt taacgctggt caggctgtgc
     2281 ccagcttcct gccagccgct cccaagatgc caacactgtg ggtagaatta cttttattga
     2341 gcagtcagtc ttcaggcctc cgtgcaggag gtggtcattc tcctgtgggt aggcagggag
     2401 gcgcttgagg gctggaaggg gccaaatatt ggtcagggga agtgaaaggt ggagatggcc
     2461 cctcatctcc tgcccgcttt agggacgccc tgttgggctc ccgaattagt ggaggatcag
     2521 ttttccatgc ctctgggggt gcagggtggc actgacaagg ggtgacgctt ccccacatgt
     2581 ggccaacgtt tcaaagtgtc caaagggctt ctccacccac cttctcacaa gtttcagagt
     2641 agccctgggg caaaggcagg ccctatattc atacccactg gatagatgag gatgttgagg
     2701 cccgaagcac gagcccaggg tcagctgcca agatgccttg gttcaagtcc ttgctcttta
     2761 gagagatctc catcagttcg gtgatctcca cgggccctcc cagtcctgct gttaagactc
     2821 acctcccgaa gacagcttgt tgacaaaatt cctagctctt gtacccacca gcggcatgac
     2881 ggatgcagcc agatgtgtcc caggtgatca cgaggccgtg cctttgtttc tcccagctgc
     2941 cctcacctgg cctggtcccg gctttgcagc ccacctggca tcagcctgca gggggacatc
     3001 accccgggat gactcttcag ttcccagtgg gggcctcgtg ctccatccac cctctcaccc
     3061 cgtcctcgca cctaccctgc acagcacaca ctgtcatccc cacttcagaa ggagactggg
     3121 aaccaggggt gggggttggg tgcccgccat tcacacagcc aagaagtgag gtggtaccag
     3181 ggtataaacc cagatatgtc cctaaagcca aggctctttt tgctgcacca ggttgggccc
     3241 ccccatcttt ataataacag aggctcatta gggaacacag acctggggta gccctgtgag
     3301 caaggacaga agactgggca aaaggcactg gccgattcac ggggacctga gtagagaggg
     3361 ctttggaggg atgcagggac ggagggggaa ggggagaagg gggaggtgca actctccctc
     3421 cttgagctcc cctaccccca gccccaccca agcaaacaag catgcattta tctttttggt
     3481 ctgtctgtca acaactctct gttgcctttt tacagcaagc agcttttcta gatctccgtt
     3541 ttgcttttgt aacttgaaga tatttattct gggttttgta gcatttttat tatacagtga
     3601 ctttttaaaa taaaaacaac ttgtcgtgac tctt
//
LOCUS       XM_032610282             618 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus low density lipoprotein receptor class A
            domain containing 1 (LDLRAD1), mRNA.
ACCESSION   XM_032610282
VERSION     XM_032610282.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..618
                     /gene="LDLRAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins"
                     /db_xref="GeneID:116742560"
     CDS             1..618
                     /gene="LDLRAD1"
                     /codon_start=1
                     /product="low-density lipoprotein receptor class A
                     domain-containing protein 1"
                     /protein_id="XP_032466173.1"
                     /db_xref="GeneID:116742560"
                     /translation="MKKIFPQGDGNAAAAGSKALPRRQADQSPFCCSCRGACLSAFLM
                     LLLATLAALIALVAILGPPPRTPGAQPCVTQMNRTGFLCHDRRSCIPASRVCDGIHTC
                     AHGEDEEEALCRDMPQSFPGFLVAHCGDPASWIYSDQKCDGINNCGDCSDELSPVTVC
                     PPCGPGWWRCPSTVFKYCSCIPRSLCRDHVQHCSDWSDEYSCPGP"
ORIGIN      
        1 atgaaaaaga tcttccccca gggggatggc aatgctgctg ccgctggaag caaagccctc
       61 cccagaaggc aagcagacca gagccctttc tgctgctcgt gccgaggggc ctgcctctca
      121 gccttcctga tgctcctgct ggcaactctt gcagccctga ttgccctggt cgccatcctt
      181 ggacccccac ctcgcacgcc aggggcccag ccctgcgtga cacagatgaa caggacgggc
      241 ttcctatgcc acgaccggag gagctgcatc ccagccagca gggtctgtga tggcatccac
      301 acctgtgccc acggcgagga cgaggaggag gccttgtgcc gagacatgcc ccagagcttc
      361 cctggcttcc tcgtggctca ctgcggagac cccgcttcct ggatctactc agaccaaaag
      421 tgtgatggga tcaacaactg tggggactgc tcagatgaac tgagcccagt gactgtgtgc
      481 ccaccctgcg gccctggctg gtggcgctgt ccctcgaccg tcttcaaata ttgcagctgt
      541 atccccagga gcctctgccg tgatcacgtg cagcattgct ctgactggtc ggatgagtac
      601 tcctgtcctg gaccctga
//
LOCUS       XM_032610296            8518 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PR/SET domain 16 (PRDM16), transcript
            variant X1, mRNA.
ACCESSION   XM_032610296
VERSION     XM_032610296.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8518
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8518
                     /gene="PRDM16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742567"
     CDS             230..3883
                     /gene="PRDM16"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase PRDM16
                     isoform X1"
                     /protein_id="XP_032466187.1"
                     /db_xref="GeneID:116742567"
                     /translation="MRSKARARKLAKSDGDIVNNMYGPDPDLLAGESAEDETEDSIMS
                     PIPMGPPSPFPTSEDFTPKEGSPYEAPVYIPEDIPIPPDFELRESSIPGAGLGIWAKK
                     KMEVGERFGPYMVAPRAALKEVDFGWEQMLTDAEVSSQEGCIQKISEDLGSGKFCVDA
                     NQAGAGSWLKYIRVACSCDDQNLTMCQINEQIYYKVIKDIEPGEELLVHVKEGSYSLG
                     TVPPSLDEDPTFRCDACDELFPSKLDLRRHKKYACSSVGAVLYEGLADELKPEGLGGG
                     GSDGQAHECKDCERMFPTKYSLEQHMVVHTEEREYKCDQCPKAFNWKSNLIRHQMSHD
                     SGKRFECENCVKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHIHST
                     VKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGK
                     NHYTPGGIFAPGLPLTPSPMMDKAKPPPSLNHASLGFNEYFPSRPHPGSLPFSAAPPA
                     FPALTPGFPGVFPPSLYPRPPLLPPMPLLKSPRNHTQDAKLPSPMGNPALPLVSAIGS
                     SGQGATAAAGPEEKPESRLEDAYGAKLKPRGSDLSDGSDFEDINTTTGTDLDTTTGTG
                     SDLDSDVDSDRDKTTDRGKAAEGKREFGGGAAAPGAPESAGEVPVFYSQHFFPPPEEQ
                     LLTASGAAGDSIKAIASIAEKYFGPGFMGVQEKKLGALPYHSVFPFQFLPNFPHSLYP
                     FTDRALAHSLLVKAEPKSPRDALKAGGPSAESPFDLTTKPKEARPVLPAPKAPPAPAS
                     GEEQPLDLSIGSRVRASQNGGTREPRKNHVYGERRLGAGEGPPKACPAQLPQQPALHY
                     ARPSPFFMDPIYSRVEKRKVTDPVGALKEKYLRPSPLLFHPQMSAIETMTEKLESFAA
                     MKAESGSSLQPLPPHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSANLTRHLR
                     THTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKK
                     HEHEHAPVSQHSGVLTNHLATSTSSPASESDHHALLDEKEDSYFSEIRNFIANSEMNQ
                     ATTRTDKRPEVQDLDGAPPVARAWPAGNLRTQRRRKRTSWRTTATAWRGGPRTTPCAP
                     TPERQAACEDEEDGPRLPGHGLRPHPKAYAMMLSLSEDAPLHTSSQSPLDAWLNIAGA
                     TPESGAFNPINHL"
     misc_feature    410..895
                     /gene="PRDM16"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 16 (PRDM16) and similar proteins; Region:
                     PR-SET_PRDM16; cd19213"
                     /db_xref="CDD:380990"
     misc_feature    order(500..502,509..517,566..568,698..700,737..751,
                     755..757,782..787,857..859)
                     /gene="PRDM16"
                     /note="putative active site [active]"
                     /db_xref="CDD:380990"
     misc_feature    order(500..502,509..517,737..751,755..757,857..859)
                     /gene="PRDM16"
                     /note="putative SAM binding site; other site"
                     /db_xref="CDD:380990"
     misc_feature    923..1024
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(923..925,932..934,971..973,1022..1024)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1076..1144
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1082..1144
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1082..1084,1091..1093,1130..1132,1142..1144)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1097..1099,1103..1105,1109..1111,1115..1120,
                     1127..1132,1139..1141,1181..1183,1187..1189,1199..1204,
                     1211..1216,1223..1225,1265..1267,1271..1273,1277..1279,
                     1283..1288,1295..1300)
                     /gene="PRDM16"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1118..1192
                     /gene="PRDM16"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1160..1228
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1166..1228
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    <1238..1483
                     /gene="PRDM16"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1250..1306
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1337..1399
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1415..1483
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1421..1483
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1508..1564
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3083..3151
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    3089..3151
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3089..3091,3098..3100,3137..3139,3149..3151)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3104..3106,3110..3112,3116..3118,3122..3127,
                     3134..3139,3146..3148,3188..3190,3194..3196,3206..3211,
                     3218..3223,3233..3235,3275..3277,3281..3283,3287..3289,
                     3293..3298,3305..3310,3317..3319)
                     /gene="PRDM16"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3125..3199
                     /gene="PRDM16"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    3173..>3277
                     /gene="PRDM16"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
                     cd20908"
                     /db_xref="CDD:411020"
     misc_feature    3173..3253
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:411020"
     misc_feature    3173..3238
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3188..3190,3206..3208,3242..3244,3248..3250,
                     3257..3259)
                     /gene="PRDM16"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:411020"
     misc_feature    3254..3322
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    3260..3322
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 ccgaggagag ccccccaatc ccgcgccgag gcggcggcgg cggcggcggc gcgacgatga
       61 ggatgatgaa tacatcgcaa agtttttctg gccccggcga ggggtgtcag attgagtgct
      121 ctgtgcgcat gtgcgaaggt gtccaaactg acaatgctgg ggagatgaag atagtgtgta
      181 gctgcttctg gactcaagga ggaggagaga gattccgcga gccgacacca tgcgatccaa
      241 ggcgagggcg aggaagctag ccaaaagtga cggcgacatt gtaaataaca tgtacgggcc
      301 ggaccccgac ctgctggctg gcgagagcgc cgaggacgag accgaggaca gtatcatgtc
      361 ccccatcccc atggggccgc cgtccccttt ccccaccagc gaggacttca cccccaagga
      421 aggctcgccc tacgaggccc ccgtctacat tcctgaggac atccccatcc caccggactt
      481 cgagctccgc gaatcctcta tccccggggc cggcctgggg atctgggcca agaagaagat
      541 ggaggtcggg gagcggtttg gcccgtacat ggtggcgccc cgggcagcac tgaaggaggt
      601 ggacttcggc tgggagcaaa tgctgacgga cgcagaggtg tcgtcccagg agggctgcat
      661 tcaaaagatc tccgaagacc tgggcagtgg gaagttctgc gtggacgcta atcaggccgg
      721 ggccggcagc tggctcaagt acatccgcgt ggcgtgctcc tgtgacgacc agaacctcac
      781 catgtgtcag atcaacgagc agatttatta taaagtcatt aaggacattg agccaggaga
      841 agagctactg gtccacgtga aagaaggctc gtactccctg gggacggtgc cccccagcct
      901 ggatgaggac cccacgttcc gctgtgacgc gtgtgacgaa ctcttcccgt ccaagctgga
      961 cctgcggcgc cacaagaagt acgcgtgcag ctcggtgggg gccgtgctct acgagggcct
     1021 ggccgacgag ctcaagcccg agggcctggg cggcgggggc agcgacgggc aggcccacga
     1081 gtgcaaggac tgcgagcgga tgttccccac caagtacagc ttggagcagc acatggtcgt
     1141 ccacacagag gagcgagagt acaagtgtga ccagtgtccc aaggccttca actggaagtc
     1201 caacctcatc cgccaccaga tgtcccacga cagtggcaag cgcttcgaat gtgaaaactg
     1261 tgtgaaggtg ttcacggacc ccagcaacct gcagcggcac atccgctccc agcacgtggg
     1321 cgcccgggcc cacgcctgcc ccgactgcgg gaagacgttc gccacgtcct cgggcctcaa
     1381 gcagcacaaa cacatccaca gcaccgtcaa acctttcata tgtgaggtct gccacaagtc
     1441 ctacacgcag ttctccaacc tgtgccgaca caagcgcatg cacgccgact gccgcacgca
     1501 gatcaagtgc aaggactgcg ggcagatgtt cagcactacc tcttccctca acaagcaccg
     1561 gcgcttctgc gagggcaaga accattacac gccgggcggc atcttcgctc caggcctgcc
     1621 cctgaccccc agccccatga tggacaaggc caagccgccc cccagcctca accacgccag
     1681 cctgggcttc aacgagtact tcccctccag gccgcacccg gggagcctgc ccttctcggc
     1741 ggcgcccccc gccttccccg cgctcacgcc cggcttcccg ggcgtcttcc ctccgtccct
     1801 ctacccccgg ccgcccctgc tacctcccat gccgctgctc aagagccccc ggaaccacac
     1861 gcaggacgcc aagctcccca gccccatggg caacccggcc ctgcccctcg tctccgccat
     1921 cggcagcagc ggccagggcg ccacggcggc cgcggggccc gaggagaagc cggagagccg
     1981 cctggaggac gcatacggcg ccaagctcaa gccccggggc agcgacctgt cagacggcag
     2041 cgacttcgag gatatcaaca ccacaaccgg gactgacctg gacacaacca cgggcacggg
     2101 ctccgacctg gacagcgacg tggacagcga tcgcgacaag accacggaca ggggcaaggc
     2161 ggccgagggc aagcgcgagt tcggcggtgg cgcggcggcg cccggcgccc cggagagcgc
     2221 cggcgaggtg cccgtcttct actcccagca cttcttcccg ccgcccgagg agcagctgct
     2281 gacagcgtcg ggcgccgcgg gcgactccat caaggccatt gcgtccatcg ccgagaagta
     2341 cttcgggccc ggcttcatgg gcgtgcagga gaagaagctg ggcgcactgc cctaccactc
     2401 cgtgttcccc ttccagttcc tgcccaactt cccccactcc ctgtacccct tcacagaccg
     2461 tgccctcgcg cacagcctgc tggtcaaggc cgagccaaag tcgccccggg acgccctcaa
     2521 ggccggtggc cccagcgccg agtcaccctt cgacctcacc accaaaccca aagaggccag
     2581 gcccgtcctg ccggcgccca aggcgccccc ggccccggcg tccggcgagg agcagccgct
     2641 ggacctgagc atcggcagcc gcgtgcgcgc cagccagaac ggagggaccc gggagccccg
     2701 caagaaccac gtgtacggcg agcgcaggct gggggccggt gaggggccgc ccaaggcatg
     2761 cccggcgcag ctgccccagc agccggccct gcactacgcc aggccgtcgc ccttcttcat
     2821 ggaccccatc tacagcaggg tggagaagcg gaaggtgacc gacccggtgg gagcccttaa
     2881 ggagaagtac ctgcggccgt ccccactgct cttccacccc cagatgtcag ccatcgagac
     2941 catgactgag aagctggaga gctttgcggc catgaaggcg gaatccggca gctccttgca
     3001 gcccctcccc ccccacccct tcaacttccg gtccccaccc ccgacgctct cggaccccat
     3061 cctcaggaag ggcaaggagc gctacacgtg caggtactgt ggcaagatct tcccccgatc
     3121 agcaaacctc acgagacacc tgaggacaca caccggggag cagccgtaca ggtgtaagta
     3181 ctgcgaccgg tccttcagca tctcctccaa cctccagcgg cacgtccgga acatccacaa
     3241 caaggagaag cccttcaaat gccacctgtg caaccgctgc ttcgggcagc agaccaacct
     3301 ggacagacac ctgaagaagc atgaacacga gcacgcacca gtgagccagc attcgggggt
     3361 cctcacgaac cacctggcga ccagcacctc ctcccccgcc tccgagtcgg accaccatgc
     3421 acttttagat gaaaaggaag actcctattt ctcagaaatc agaaacttta ttgccaacag
     3481 cgagatgaac caagcaacaa cgcgaacaga caaacggccg gaagtccagg acctggacgg
     3541 tgcccccccc gtggcccggg cctggccggc gggaaacctg aggacgcaga ggaggaggaa
     3601 gaggacgagc tggaggacga cggcgacagc ctggcgggga ggtcccagga cgacaccgtg
     3661 tgcccccacg ccggagcgcc aggctgcctg cgaggacgag gaggatgggc cccgcctccc
     3721 tggccatggg cttcgaccac acccgaaggc gtatgcaatg atgctgtccc tttccgagga
     3781 cgctcctctc cacacctcct cccagagtcc tctggacgct tggttgaaca tcgcgggagc
     3841 cacgccagag tccggagcct tcaaccccat caaccacctc tgaccgcccc ccgaagggct
     3901 ggggtcagag tccaagcgag gcctccacgg gcccccgaca tcccgacaga aatcccagct
     3961 gcggaagatg gaggccaggg ccttggggag ccggagcggc ccggggccga ggagacccct
     4021 tgtcacctgc gtctgacctc tcctcagcgt ctgtgccccc cgccatggtc caactttaac
     4081 ttttccaacg aaaactcaga acccggagtc cttggagcca tcgtagggtt tcaccggctc
     4141 taagaactgt cttgaggacg gcgttcgaga tggttcagct cacagtgtcc gggtgcagcg
     4201 ccggggggct gctttgccag agtcaagccc gtgggcgagg gcgggatttg aaccccaaac
     4261 tgaggccggc gggccgctcc caggcgcccg cgtggtgtct cgagagggaa cggacagctg
     4321 ggtgtgctct aaagagggaa ccgcccagac gatttttata atgaagatta caaggatgac
     4381 ccttttggta atcttattga gacagagtct atttaagcat gtggtttttg cggttttaaa
     4441 aatagacagt attttaaaaa aaaatcacga agtgacttac cagttgtttt ttaaaagtaa
     4501 ttttgcattg ctttgaaaat ctcagtttat tgcaaacccc aagcctgcct gggagccagc
     4561 actgcgtttg gggatgttct ttatactgta gatgcagaga aattttctat ctctgaccgt
     4621 atttgtaaag cccaaggtga ttctgggggt cgcccccggg gcagaactga gtttgggggg
     4681 ccgactcccg tgagcagttt cagactgtgc ccgggaatca gatacggtgt cctgggctgg
     4741 cccaaggctg ggactcggag atgtgcctgt cattgtgtgc catgcgattc gtgcctgtgg
     4801 cccccatcca gacgcccgat tgtatggggg aggtcggagc ggtggctggt tccctgatgt
     4861 tctccccaca agggctgtgc ctcggccacc ccacgccagc ccgcccacca ccgtcctcag
     4921 aaggcagggc ctgccggtca cattcggatc tccagccctc accctcaccc acccccggtc
     4981 agacggacaa gggggaggag gcgggcctcc gcaggggcca ccgggggccg cacttcaagg
     5041 ctcccttttg ctccaggcgg ccaagctcca cgtgtacctg acaccccaag acacgactgc
     5101 cacttcgctc tttgtgtggg ctcctggcgg gcaggacccg gctccagaac gaagggcgtc
     5161 cagacgcgac ctaccgcaaa gagcaaagac agcacagccc cgtggggacg cgcctcccca
     5221 gggaccaggc tacttctcca ctcggatggg ctttaaatta ttcccgtagg ggccaatttc
     5281 gagtaatcgt ttgttttccc tgatggaatt gaccttaatc tgtatataac ttgtaatttt
     5341 ttctaattca tttcttttct tattttattt tttccttaac agtatttttg gcattagaca
     5401 ttcttattgt gaagaaataa tgttaatata agtatctagt gaaggaccaa aaccgtgtaa
     5461 taaggtcgtg tgatgtgtga tcaataacca gggagtgggg ccgttttgaa tgtgccaaat
     5521 accccgcgtc ccccgcccaa caaatcctgc tgcccgtttt ccagacaatc acgtgtttct
     5581 gttcaatttg agtttcagct gcgtttaaga caagtgctct atttatttct tttcttgttt
     5641 ggaagataag aagcgaatag catcctgaga agaagagaaa aagaaaaaat ctcccaagtt
     5701 gccctaaaaa acgtgtgaaa atacaaacgg ctgtggagtg gccaaccgtt cggccactcc
     5761 aagccaagac aatcgtccac ctgggcactg ggggtccagc ctcgcgctgg agacctgcgg
     5821 tggggagtcc ccgggggcgc acagacctac gggtcccagt gaaagggctt tggcccttcc
     5881 cagatccagt tgaggtgaca ggctcagagc acctggcatg tgggcgccgg ctggaaggtc
     5941 gccccccggg gcagccggag aagctgctgg tggaggacgg gccgtggcca cacccatgag
     6001 gatctgcaga ctcaaagttg ggctcacacc tgctcggagg catcctcggc ccgcctcggc
     6061 cagacccgcc tggtgtgtag gaattttcca acttcccctc cgccgagatg ggacctcttt
     6121 gaaaagtcaa cctcagatac cactccccat ttctgtaaac ccaaattata tgatttcttc
     6181 tgctaaagaa taaggtgtgt gctttttttt gcgatatgac tctctcagtc caaaacagga
     6241 cgtttgggct gggggagacc cgagggtctg ttccctgtgg cccggccctg ccgttcacct
     6301 ctgtctctct gtgaccgtca cggtcggact tctgtgggcg atcttcttaa ccattatctc
     6361 ttccctttcc ttcttttctt cccttcccca agaaccctgg ttgcacattt taagtcctgt
     6421 tttcttgtcc ctctgaaaac gattagagca agcccagttt ctcctctggc ctgaacactt
     6481 ggctggcctg ggggggtggg gtggggtctg tccttgtacc cctgggcaaa gaaagcactt
     6541 acttcctatg cctggtgtgt ccgtgaagcc cggtttcaaa gcttagcatt gctcctaacc
     6601 acagcgagct gcccccgctc tggtctttct ctgcccactg ggctctagca ccagccgctt
     6661 gttcaggccc cgacacctcc acgtgccggg ggaccctctg gggttggggt ctgggagcca
     6721 gggagccggg ctggagaatt ccgagatccc agcttcagag cgcagacaca gcaggcagct
     6781 ggctggctga ccactctgtc ccgtgggcgg gtggccaggg tcagggctgt ggacctgggt
     6841 gtcccactgg gccaggtgtg tccggggcca gggcccttcg gtcgagcctc tgctgcttcc
     6901 tctctggact gtggacactt acccccaaat ggaaattcga aaggaagccc cctcaccttt
     6961 ccctcctccg cccctcaaac cccagtcccc cgaggaccca taccctctca ttcccaggac
     7021 catggggtag gatcccaggg ctgccaatgc tttggccagc cagcccttca agagtgggac
     7081 ccacaagccc cccgatctga acccaggggc atgcgttcct gcatctggcc tgggaccctg
     7141 gggtgcggat gagtggacag ggtgagcctg agagactgcc cggccggcgt ggccttcctg
     7201 cacaaagcca agggtgcagc cagtgcgtcc agaccctgac tggccctgga aaccctgagg
     7261 gcccttggcc ttctctgtcc tggctgcttc ctcagttcac aaagcacttg cctgaataca
     7321 cgtccctcgt gttagccccg aagcctcgaa gcactggatt atggagcccc tgtgccccgg
     7381 cccccccggc caagtgactg aaatctactg agctgtattc actgtgctgt cctgggggag
     7441 gggcaagggg cagcaccccc cgggagagca ccctgcactg ctgcccgggg tagggggacg
     7501 gacagggagc cgggcacctc gctcccctcc cggctgggga cgcgaagata cggctgctcc
     7561 tggtcggtgg aggtcagccg ggtctcaaaa gccatgaaac tgtgtctctg tagcaatgag
     7621 tgatactgtg actaagacgt cctcacatta ttccagggag cgatcctttt ctcctgccat
     7681 tccagtgttt ttgttttatt tcttttctgt cactgattca tattaccact tttggaaaaa
     7741 cataaaagaa gatgaaatga aaaggcagct tgagtttcca aatgtgcaat ccacttgtga
     7801 acaaagtaac cctaaaggtt cctttccgtg cattttgcat cctctgttct gttccagacg
     7861 agggaagctg agccccgtgt cagactacgg cgctgaaagc acctgtatgt gtacgctggt
     7921 gacactccaa acccgtgcat ccatgtcatc cttcaccatt gttacactac agattcggtt
     7981 tcttttattt tcttttagag ctatataacg ttgtaaaaga aatcaaatgt aaatgtctgg
     8041 ttttcatata atgtttttta aaaaaccatt gagaaggagg ctggtgtgtg tcccacgtcc
     8101 cccgattgta aattgcttct gttctaagta aactgtgcat ggctcgtgtg tagcagtcat
     8161 taccgtgtct gttcgtgaaa ttttacaaaa aggaaaatcc cgtagatgca cttactgaat
     8221 atgtgattag ggtctacgtc ctcaagacta gaagtctcga actgcccacg tggaagatgc
     8281 agttcttaat ccatacggaa atcgctgtgg gagaaggaaa taaaaaagac accaagtgta
     8341 ggagtcattc agagagcgat tctgcagatt tcattttgat gcttgtgata aagacaaatg
     8401 tacttgtgta gagaaacgtc tttaagatga agcctaggag aagccgattt cgaggttgat
     8461 gctgtagtct aggactgtat accaaatgta atctttccaa tgctacaatg aatttata
//
LOCUS       XM_032610303            8515 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PR/SET domain 16 (PRDM16), transcript
            variant X2, mRNA.
ACCESSION   XM_032610303
VERSION     XM_032610303.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8515
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8515
                     /gene="PRDM16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742567"
     CDS             230..3880
                     /gene="PRDM16"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase PRDM16
                     isoform X2"
                     /protein_id="XP_032466194.1"
                     /db_xref="GeneID:116742567"
                     /translation="MRSKARARKLAKSDGDIVNNMYGPDPDLLAGESAEDETEDSIMS
                     PIPMGPPSPFPTSEDFTPKEGSPYEAPVYIPEDIPIPPDFELRESSIPGAGLGIWAKK
                     KMEVGERFGPYMVAPRAALKEVDFGWEQMLTDAEVSSQEGCIQKISEDLGSGKFCVDA
                     NQAGAGSWLKYIRVACSCDDQNLTMCQINEQIYYKVIKDIEPGEELLVHVKEGSYSLG
                     TVPPSLDEDPTFRCDACDELFPSKLDLRRHKKYACSSVGAVLYEGLADELKPEGLGGG
                     GSDGQAHECKDCERMFPTKYSLEQHMVVHTEEREYKCDQCPKAFNWKSNLIRHQMSHD
                     SGKRFECENCVKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHIHST
                     VKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGK
                     NHYTPGGIFAPGLPLTPSPMMDKAKPPPSLNHASLGFNEYFPSRPHPGSLPFSAAPPA
                     FPALTPGFPGVFPPSLYPRPPLLPPMPLLKSPRNHTQDAKLPSPMGNPALPLVSAIGS
                     SGQGATAAAGPEEKPESRLEDAYGAKLKPRGSDLSDGSDFEDINTTTGTDLDTTTGTG
                     SDLDSDVDSDRDKTTDRGKAAEGKREFGGGAAAPGAPESAGEVPVFYSQHFFPPPEEQ
                     LLTASGAAGDSIKAIASIAEKYFGPGFMGVQEKKLGALPYHSVFPFQFLPNFPHSLYP
                     FTDRALAHSLLVKAEPKSPRDALKAGGPSAESPFDLTTKPKEARPVLPAPKAPPAPAS
                     GEEQPLDLSIGSRVRASQNGGTREPRKNHVYGERRLGAGEGPPKACPAQLPQQPALHY
                     ARPSPFFMDPIYRVEKRKVTDPVGALKEKYLRPSPLLFHPQMSAIETMTEKLESFAAM
                     KAESGSSLQPLPPHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSANLTRHLRT
                     HTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKH
                     EHEHAPVSQHSGVLTNHLATSTSSPASESDHHALLDEKEDSYFSEIRNFIANSEMNQA
                     TTRTDKRPEVQDLDGAPPVARAWPAGNLRTQRRRKRTSWRTTATAWRGGPRTTPCAPT
                     PERQAACEDEEDGPRLPGHGLRPHPKAYAMMLSLSEDAPLHTSSQSPLDAWLNIAGAT
                     PESGAFNPINHL"
     misc_feature    410..895
                     /gene="PRDM16"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 16 (PRDM16) and similar proteins; Region:
                     PR-SET_PRDM16; cd19213"
                     /db_xref="CDD:380990"
     misc_feature    order(500..502,509..517,566..568,698..700,737..751,
                     755..757,782..787,857..859)
                     /gene="PRDM16"
                     /note="putative active site [active]"
                     /db_xref="CDD:380990"
     misc_feature    order(500..502,509..517,737..751,755..757,857..859)
                     /gene="PRDM16"
                     /note="putative SAM binding site; other site"
                     /db_xref="CDD:380990"
     misc_feature    923..1024
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(923..925,932..934,971..973,1022..1024)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1076..1144
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1082..1144
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1082..1084,1091..1093,1130..1132,1142..1144)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1097..1099,1103..1105,1109..1111,1115..1120,
                     1127..1132,1139..1141,1181..1183,1187..1189,1199..1204,
                     1211..1216,1223..1225,1265..1267,1271..1273,1277..1279,
                     1283..1288,1295..1300)
                     /gene="PRDM16"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1118..1192
                     /gene="PRDM16"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1160..1228
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1166..1228
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    <1238..1483
                     /gene="PRDM16"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1250..1306
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1337..1399
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1415..1483
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    1421..1483
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1508..1564
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3080..3148
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    3086..3148
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3086..3088,3095..3097,3134..3136,3146..3148)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3101..3103,3107..3109,3113..3115,3119..3124,
                     3131..3136,3143..3145,3185..3187,3191..3193,3203..3208,
                     3215..3220,3230..3232,3272..3274,3278..3280,3284..3286,
                     3290..3295,3302..3307,3314..3316)
                     /gene="PRDM16"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3122..3196
                     /gene="PRDM16"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    3170..>3274
                     /gene="PRDM16"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
                     cd20908"
                     /db_xref="CDD:411020"
     misc_feature    3170..3250
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:411020"
     misc_feature    3170..3235
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3185..3187,3203..3205,3239..3241,3245..3247,
                     3254..3256)
                     /gene="PRDM16"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:411020"
     misc_feature    3251..3319
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    3257..3319
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 ccgaggagag ccccccaatc ccgcgccgag gcggcggcgg cggcggcggc gcgacgatga
       61 ggatgatgaa tacatcgcaa agtttttctg gccccggcga ggggtgtcag attgagtgct
      121 ctgtgcgcat gtgcgaaggt gtccaaactg acaatgctgg ggagatgaag atagtgtgta
      181 gctgcttctg gactcaagga ggaggagaga gattccgcga gccgacacca tgcgatccaa
      241 ggcgagggcg aggaagctag ccaaaagtga cggcgacatt gtaaataaca tgtacgggcc
      301 ggaccccgac ctgctggctg gcgagagcgc cgaggacgag accgaggaca gtatcatgtc
      361 ccccatcccc atggggccgc cgtccccttt ccccaccagc gaggacttca cccccaagga
      421 aggctcgccc tacgaggccc ccgtctacat tcctgaggac atccccatcc caccggactt
      481 cgagctccgc gaatcctcta tccccggggc cggcctgggg atctgggcca agaagaagat
      541 ggaggtcggg gagcggtttg gcccgtacat ggtggcgccc cgggcagcac tgaaggaggt
      601 ggacttcggc tgggagcaaa tgctgacgga cgcagaggtg tcgtcccagg agggctgcat
      661 tcaaaagatc tccgaagacc tgggcagtgg gaagttctgc gtggacgcta atcaggccgg
      721 ggccggcagc tggctcaagt acatccgcgt ggcgtgctcc tgtgacgacc agaacctcac
      781 catgtgtcag atcaacgagc agatttatta taaagtcatt aaggacattg agccaggaga
      841 agagctactg gtccacgtga aagaaggctc gtactccctg gggacggtgc cccccagcct
      901 ggatgaggac cccacgttcc gctgtgacgc gtgtgacgaa ctcttcccgt ccaagctgga
      961 cctgcggcgc cacaagaagt acgcgtgcag ctcggtgggg gccgtgctct acgagggcct
     1021 ggccgacgag ctcaagcccg agggcctggg cggcgggggc agcgacgggc aggcccacga
     1081 gtgcaaggac tgcgagcgga tgttccccac caagtacagc ttggagcagc acatggtcgt
     1141 ccacacagag gagcgagagt acaagtgtga ccagtgtccc aaggccttca actggaagtc
     1201 caacctcatc cgccaccaga tgtcccacga cagtggcaag cgcttcgaat gtgaaaactg
     1261 tgtgaaggtg ttcacggacc ccagcaacct gcagcggcac atccgctccc agcacgtggg
     1321 cgcccgggcc cacgcctgcc ccgactgcgg gaagacgttc gccacgtcct cgggcctcaa
     1381 gcagcacaaa cacatccaca gcaccgtcaa acctttcata tgtgaggtct gccacaagtc
     1441 ctacacgcag ttctccaacc tgtgccgaca caagcgcatg cacgccgact gccgcacgca
     1501 gatcaagtgc aaggactgcg ggcagatgtt cagcactacc tcttccctca acaagcaccg
     1561 gcgcttctgc gagggcaaga accattacac gccgggcggc atcttcgctc caggcctgcc
     1621 cctgaccccc agccccatga tggacaaggc caagccgccc cccagcctca accacgccag
     1681 cctgggcttc aacgagtact tcccctccag gccgcacccg gggagcctgc ccttctcggc
     1741 ggcgcccccc gccttccccg cgctcacgcc cggcttcccg ggcgtcttcc ctccgtccct
     1801 ctacccccgg ccgcccctgc tacctcccat gccgctgctc aagagccccc ggaaccacac
     1861 gcaggacgcc aagctcccca gccccatggg caacccggcc ctgcccctcg tctccgccat
     1921 cggcagcagc ggccagggcg ccacggcggc cgcggggccc gaggagaagc cggagagccg
     1981 cctggaggac gcatacggcg ccaagctcaa gccccggggc agcgacctgt cagacggcag
     2041 cgacttcgag gatatcaaca ccacaaccgg gactgacctg gacacaacca cgggcacggg
     2101 ctccgacctg gacagcgacg tggacagcga tcgcgacaag accacggaca ggggcaaggc
     2161 ggccgagggc aagcgcgagt tcggcggtgg cgcggcggcg cccggcgccc cggagagcgc
     2221 cggcgaggtg cccgtcttct actcccagca cttcttcccg ccgcccgagg agcagctgct
     2281 gacagcgtcg ggcgccgcgg gcgactccat caaggccatt gcgtccatcg ccgagaagta
     2341 cttcgggccc ggcttcatgg gcgtgcagga gaagaagctg ggcgcactgc cctaccactc
     2401 cgtgttcccc ttccagttcc tgcccaactt cccccactcc ctgtacccct tcacagaccg
     2461 tgccctcgcg cacagcctgc tggtcaaggc cgagccaaag tcgccccggg acgccctcaa
     2521 ggccggtggc cccagcgccg agtcaccctt cgacctcacc accaaaccca aagaggccag
     2581 gcccgtcctg ccggcgccca aggcgccccc ggccccggcg tccggcgagg agcagccgct
     2641 ggacctgagc atcggcagcc gcgtgcgcgc cagccagaac ggagggaccc gggagccccg
     2701 caagaaccac gtgtacggcg agcgcaggct gggggccggt gaggggccgc ccaaggcatg
     2761 cccggcgcag ctgccccagc agccggccct gcactacgcc aggccgtcgc ccttcttcat
     2821 ggaccccatc tacagggtgg agaagcggaa ggtgaccgac ccggtgggag cccttaagga
     2881 gaagtacctg cggccgtccc cactgctctt ccacccccag atgtcagcca tcgagaccat
     2941 gactgagaag ctggagagct ttgcggccat gaaggcggaa tccggcagct ccttgcagcc
     3001 cctccccccc caccccttca acttccggtc cccacccccg acgctctcgg accccatcct
     3061 caggaagggc aaggagcgct acacgtgcag gtactgtggc aagatcttcc cccgatcagc
     3121 aaacctcacg agacacctga ggacacacac cggggagcag ccgtacaggt gtaagtactg
     3181 cgaccggtcc ttcagcatct cctccaacct ccagcggcac gtccggaaca tccacaacaa
     3241 ggagaagccc ttcaaatgcc acctgtgcaa ccgctgcttc gggcagcaga ccaacctgga
     3301 cagacacctg aagaagcatg aacacgagca cgcaccagtg agccagcatt cgggggtcct
     3361 cacgaaccac ctggcgacca gcacctcctc ccccgcctcc gagtcggacc accatgcact
     3421 tttagatgaa aaggaagact cctatttctc agaaatcaga aactttattg ccaacagcga
     3481 gatgaaccaa gcaacaacgc gaacagacaa acggccggaa gtccaggacc tggacggtgc
     3541 cccccccgtg gcccgggcct ggccggcggg aaacctgagg acgcagagga ggaggaagag
     3601 gacgagctgg aggacgacgg cgacagcctg gcggggaggt cccaggacga caccgtgtgc
     3661 ccccacgccg gagcgccagg ctgcctgcga ggacgaggag gatgggcccc gcctccctgg
     3721 ccatgggctt cgaccacacc cgaaggcgta tgcaatgatg ctgtcccttt ccgaggacgc
     3781 tcctctccac acctcctccc agagtcctct ggacgcttgg ttgaacatcg cgggagccac
     3841 gccagagtcc ggagccttca accccatcaa ccacctctga ccgccccccg aagggctggg
     3901 gtcagagtcc aagcgaggcc tccacgggcc cccgacatcc cgacagaaat cccagctgcg
     3961 gaagatggag gccagggcct tggggagccg gagcggcccg gggccgagga gaccccttgt
     4021 cacctgcgtc tgacctctcc tcagcgtctg tgccccccgc catggtccaa ctttaacttt
     4081 tccaacgaaa actcagaacc cggagtcctt ggagccatcg tagggtttca ccggctctaa
     4141 gaactgtctt gaggacggcg ttcgagatgg ttcagctcac agtgtccggg tgcagcgccg
     4201 gggggctgct ttgccagagt caagcccgtg ggcgagggcg ggatttgaac cccaaactga
     4261 ggccggcggg ccgctcccag gcgcccgcgt ggtgtctcga gagggaacgg acagctgggt
     4321 gtgctctaaa gagggaaccg cccagacgat ttttataatg aagattacaa ggatgaccct
     4381 tttggtaatc ttattgagac agagtctatt taagcatgtg gtttttgcgg ttttaaaaat
     4441 agacagtatt ttaaaaaaaa atcacgaagt gacttaccag ttgtttttta aaagtaattt
     4501 tgcattgctt tgaaaatctc agtttattgc aaaccccaag cctgcctggg agccagcact
     4561 gcgtttgggg atgttcttta tactgtagat gcagagaaat tttctatctc tgaccgtatt
     4621 tgtaaagccc aaggtgattc tgggggtcgc ccccggggca gaactgagtt tggggggccg
     4681 actcccgtga gcagtttcag actgtgcccg ggaatcagat acggtgtcct gggctggccc
     4741 aaggctggga ctcggagatg tgcctgtcat tgtgtgccat gcgattcgtg cctgtggccc
     4801 ccatccagac gcccgattgt atgggggagg tcggagcggt ggctggttcc ctgatgttct
     4861 ccccacaagg gctgtgcctc ggccacccca cgccagcccg cccaccaccg tcctcagaag
     4921 gcagggcctg ccggtcacat tcggatctcc agccctcacc ctcacccacc cccggtcaga
     4981 cggacaaggg ggaggaggcg ggcctccgca ggggccaccg ggggccgcac ttcaaggctc
     5041 ccttttgctc caggcggcca agctccacgt gtacctgaca ccccaagaca cgactgccac
     5101 ttcgctcttt gtgtgggctc ctggcgggca ggacccggct ccagaacgaa gggcgtccag
     5161 acgcgaccta ccgcaaagag caaagacagc acagccccgt ggggacgcgc ctccccaggg
     5221 accaggctac ttctccactc ggatgggctt taaattattc ccgtaggggc caatttcgag
     5281 taatcgtttg ttttccctga tggaattgac cttaatctgt atataacttg taattttttc
     5341 taattcattt cttttcttat tttatttttt ccttaacagt atttttggca ttagacattc
     5401 ttattgtgaa gaaataatgt taatataagt atctagtgaa ggaccaaaac cgtgtaataa
     5461 ggtcgtgtga tgtgtgatca ataaccaggg agtggggccg ttttgaatgt gccaaatacc
     5521 ccgcgtcccc cgcccaacaa atcctgctgc ccgttttcca gacaatcacg tgtttctgtt
     5581 caatttgagt ttcagctgcg tttaagacaa gtgctctatt tatttctttt cttgtttgga
     5641 agataagaag cgaatagcat cctgagaaga agagaaaaag aaaaaatctc ccaagttgcc
     5701 ctaaaaaacg tgtgaaaata caaacggctg tggagtggcc aaccgttcgg ccactccaag
     5761 ccaagacaat cgtccacctg ggcactgggg gtccagcctc gcgctggaga cctgcggtgg
     5821 ggagtccccg ggggcgcaca gacctacggg tcccagtgaa agggctttgg cccttcccag
     5881 atccagttga ggtgacaggc tcagagcacc tggcatgtgg gcgccggctg gaaggtcgcc
     5941 ccccggggca gccggagaag ctgctggtgg aggacgggcc gtggccacac ccatgaggat
     6001 ctgcagactc aaagttgggc tcacacctgc tcggaggcat cctcggcccg cctcggccag
     6061 acccgcctgg tgtgtaggaa ttttccaact tcccctccgc cgagatggga cctctttgaa
     6121 aagtcaacct cagataccac tccccatttc tgtaaaccca aattatatga tttcttctgc
     6181 taaagaataa ggtgtgtgct tttttttgcg atatgactct ctcagtccaa aacaggacgt
     6241 ttgggctggg ggagacccga gggtctgttc cctgtggccc ggccctgccg ttcacctctg
     6301 tctctctgtg accgtcacgg tcggacttct gtgggcgatc ttcttaacca ttatctcttc
     6361 cctttccttc ttttcttccc ttccccaaga accctggttg cacattttaa gtcctgtttt
     6421 cttgtccctc tgaaaacgat tagagcaagc ccagtttctc ctctggcctg aacacttggc
     6481 tggcctgggg gggtggggtg gggtctgtcc ttgtacccct gggcaaagaa agcacttact
     6541 tcctatgcct ggtgtgtccg tgaagcccgg tttcaaagct tagcattgct cctaaccaca
     6601 gcgagctgcc cccgctctgg tctttctctg cccactgggc tctagcacca gccgcttgtt
     6661 caggccccga cacctccacg tgccggggga ccctctgggg ttggggtctg ggagccaggg
     6721 agccgggctg gagaattccg agatcccagc ttcagagcgc agacacagca ggcagctggc
     6781 tggctgacca ctctgtcccg tgggcgggtg gccagggtca gggctgtgga cctgggtgtc
     6841 ccactgggcc aggtgtgtcc ggggccaggg cccttcggtc gagcctctgc tgcttcctct
     6901 ctggactgtg gacacttacc cccaaatgga aattcgaaag gaagccccct cacctttccc
     6961 tcctccgccc ctcaaacccc agtcccccga ggacccatac cctctcattc ccaggaccat
     7021 ggggtaggat cccagggctg ccaatgcttt ggccagccag cccttcaaga gtgggaccca
     7081 caagcccccc gatctgaacc caggggcatg cgttcctgca tctggcctgg gaccctgggg
     7141 tgcggatgag tggacagggt gagcctgaga gactgcccgg ccggcgtggc cttcctgcac
     7201 aaagccaagg gtgcagccag tgcgtccaga ccctgactgg ccctggaaac cctgagggcc
     7261 cttggccttc tctgtcctgg ctgcttcctc agttcacaaa gcacttgcct gaatacacgt
     7321 ccctcgtgtt agccccgaag cctcgaagca ctggattatg gagcccctgt gccccggccc
     7381 ccccggccaa gtgactgaaa tctactgagc tgtattcact gtgctgtcct gggggagggg
     7441 caaggggcag caccccccgg gagagcaccc tgcactgctg cccggggtag ggggacggac
     7501 agggagccgg gcacctcgct cccctcccgg ctggggacgc gaagatacgg ctgctcctgg
     7561 tcggtggagg tcagccgggt ctcaaaagcc atgaaactgt gtctctgtag caatgagtga
     7621 tactgtgact aagacgtcct cacattattc cagggagcga tccttttctc ctgccattcc
     7681 agtgtttttg ttttatttct tttctgtcac tgattcatat taccactttt ggaaaaacat
     7741 aaaagaagat gaaatgaaaa ggcagcttga gtttccaaat gtgcaatcca cttgtgaaca
     7801 aagtaaccct aaaggttcct ttccgtgcat tttgcatcct ctgttctgtt ccagacgagg
     7861 gaagctgagc cccgtgtcag actacggcgc tgaaagcacc tgtatgtgta cgctggtgac
     7921 actccaaacc cgtgcatcca tgtcatcctt caccattgtt acactacaga ttcggtttct
     7981 tttattttct tttagagcta tataacgttg taaaagaaat caaatgtaaa tgtctggttt
     8041 tcatataatg ttttttaaaa aaccattgag aaggaggctg gtgtgtgtcc cacgtccccc
     8101 gattgtaaat tgcttctgtt ctaagtaaac tgtgcatggc tcgtgtgtag cagtcattac
     8161 cgtgtctgtt cgtgaaattt tacaaaaagg aaaatcccgt agatgcactt actgaatatg
     8221 tgattagggt ctacgtcctc aagactagaa gtctcgaact gcccacgtgg aagatgcagt
     8281 tcttaatcca tacggaaatc gctgtgggag aaggaaataa aaaagacacc aagtgtagga
     8341 gtcattcaga gagcgattct gcagatttca ttttgatgct tgtgataaag acaaatgtac
     8401 ttgtgtagag aaacgtcttt aagatgaagc ctaggagaag ccgatttcga ggttgatgct
     8461 gtagtctagg actgtatacc aaatgtaatc tttccaatgc tacaatgaat ttata
//
LOCUS       XM_032610312            3833 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PR/SET domain 16 (PRDM16), transcript
            variant X3, mRNA.
ACCESSION   XM_032610312
VERSION     XM_032610312.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3833
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3833
                     /gene="PRDM16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742567"
     CDS             230..3757
                     /gene="PRDM16"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase PRDM16
                     isoform X3"
                     /protein_id="XP_032466203.1"
                     /db_xref="GeneID:116742567"
                     /translation="MRSKARARKLAKSDGDIVNNMYGPDPDLLAGESAEDETEDSIMS
                     PIPMGPPSPFPTSEDFTPKEGSPYEAPVYIPEDIPIPPDFELRESSIPGAGLGIWAKK
                     KMEVGERFGPYMVAPRAALKEVDFGWEQMLTDAEVSSQEGCIQKISEDLGSGKFCVDA
                     NQAGAGSWLKYIRVACSCDDQNLTMCQINEQIYYKVIKDIEPGEELLVHVKEGSYSLG
                     TVPPSLDEDPTFRCDACDELFPSKLDLRRHKKYACSSVGAVLYEGLADELKPEGLGGG
                     GSDGQAHECKDCERMFPTKYSLEQHMVVHTEEREYKCDQCPKAFNWKSNLIRHQMSHD
                     SGKRFECENCVKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHIHST
                     VKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGK
                     NHYTPGGIFAPGLPLTPSPMMDKAKPPPSLNHASLGFNEYFPSRPHPGSLPFSAAPPA
                     FPALTPGFPGVFPPSLYPRPPLLPPMPLLKSPRNHTQDAKLPSPMGNPALPLVSAIGS
                     SGQGATAAAGPEEKPESRLEDAYGAKLKPRGSDLSDGSDFEDINTTTGTDLDTTTGTG
                     SDLDSDVDSDRDKTTDRGKAAEGKREFGGGAAAPGAPESAGEVPVFYSQHFFPPPEEQ
                     LLTASGAAGDSIKAIASIAEKYFGPGFMGVQEKKLGALPYHSVFPFQFLPNFPHSLYP
                     FTDRALAHSLLVKAEPKSPRDALKAGGPSAESPFDLTTKPKEARPVLPAPKAPPAPAS
                     GEEQPLDLSIGSRVRASQNGGTREPRKNHVYGERRLGAGEGPPKACPAQLPQQPALHY
                     ARPSPFFMDPIYSRVEKRKVTDPVGALKEKYLRPSPLLFHPQMSAIETMTEKLESFAA
                     MKAESGSSLQPLPPHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSANLTRHLR
                     THTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKK
                     HEHEHAPVSQHSGVLTNHLATSTSSPASESDHHALLDEKEDSYFSEIRNFIANSEMNQ
                     ATTRTDKRPEVQDLDGAPPVARAWPAGNLRTQRRRKRTSWRTTATAWRGGPRTTPCAP
                     TPERQAACEDEEDGPRLPGHGLRPHPKVC"
     misc_feature    410..895
                     /gene="PRDM16"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 16 (PRDM16) and similar proteins; Region:
                     PR-SET_PRDM16; cd19213"
                     /db_xref="CDD:380990"
     misc_feature    order(500..502,509..517,566..568,698..700,737..751,
                     755..757,782..787,857..859)
                     /gene="PRDM16"
                     /note="putative active site [active]"
                     /db_xref="CDD:380990"
     misc_feature    order(500..502,509..517,737..751,755..757,857..859)
                     /gene="PRDM16"
                     /note="putative SAM binding site; other site"
                     /db_xref="CDD:380990"
     misc_feature    923..1024
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(923..925,932..934,971..973,1022..1024)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1082..1144
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1082..1084,1091..1093,1130..1132,1142..1144)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1088..1480
                     /gene="PRDM16"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    order(1097..1099,1103..1105,1109..1111,1115..1120,
                     1127..1132,1139..1141,1181..1183,1187..1189,1199..1204,
                     1211..1216,1223..1225,1265..1267,1271..1273,1277..1279,
                     1283..1288,1295..1300)
                     /gene="PRDM16"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1118..1192
                     /gene="PRDM16"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1166..1228
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1250..1306
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1337..1399
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1421..1483
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1508..1564
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3083..3151
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    3089..3151
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3089..3091,3098..3100,3137..3139,3149..3151)
                     /gene="PRDM16"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3104..3106,3110..3112,3116..3118,3122..3127,
                     3134..3139,3146..3148,3188..3190,3194..3196,3206..3211,
                     3218..3223,3233..3235,3275..3277,3281..3283,3287..3289,
                     3293..3298,3305..3310,3317..3319)
                     /gene="PRDM16"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3125..3199
                     /gene="PRDM16"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    3173..>3277
                     /gene="PRDM16"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
                     cd20908"
                     /db_xref="CDD:411020"
     misc_feature    3173..3253
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:411020"
     misc_feature    3173..3238
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3188..3190,3206..3208,3242..3244,3248..3250,
                     3257..3259)
                     /gene="PRDM16"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:411020"
     misc_feature    3254..3322
                     /gene="PRDM16"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    3260..3322
                     /gene="PRDM16"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 ccgaggagag ccccccaatc ccgcgccgag gcggcggcgg cggcggcggc gcgacgatga
       61 ggatgatgaa tacatcgcaa agtttttctg gccccggcga ggggtgtcag attgagtgct
      121 ctgtgcgcat gtgcgaaggt gtccaaactg acaatgctgg ggagatgaag atagtgtgta
      181 gctgcttctg gactcaagga ggaggagaga gattccgcga gccgacacca tgcgatccaa
      241 ggcgagggcg aggaagctag ccaaaagtga cggcgacatt gtaaataaca tgtacgggcc
      301 ggaccccgac ctgctggctg gcgagagcgc cgaggacgag accgaggaca gtatcatgtc
      361 ccccatcccc atggggccgc cgtccccttt ccccaccagc gaggacttca cccccaagga
      421 aggctcgccc tacgaggccc ccgtctacat tcctgaggac atccccatcc caccggactt
      481 cgagctccgc gaatcctcta tccccggggc cggcctgggg atctgggcca agaagaagat
      541 ggaggtcggg gagcggtttg gcccgtacat ggtggcgccc cgggcagcac tgaaggaggt
      601 ggacttcggc tgggagcaaa tgctgacgga cgcagaggtg tcgtcccagg agggctgcat
      661 tcaaaagatc tccgaagacc tgggcagtgg gaagttctgc gtggacgcta atcaggccgg
      721 ggccggcagc tggctcaagt acatccgcgt ggcgtgctcc tgtgacgacc agaacctcac
      781 catgtgtcag atcaacgagc agatttatta taaagtcatt aaggacattg agccaggaga
      841 agagctactg gtccacgtga aagaaggctc gtactccctg gggacggtgc cccccagcct
      901 ggatgaggac cccacgttcc gctgtgacgc gtgtgacgaa ctcttcccgt ccaagctgga
      961 cctgcggcgc cacaagaagt acgcgtgcag ctcggtgggg gccgtgctct acgagggcct
     1021 ggccgacgag ctcaagcccg agggcctggg cggcgggggc agcgacgggc aggcccacga
     1081 gtgcaaggac tgcgagcgga tgttccccac caagtacagc ttggagcagc acatggtcgt
     1141 ccacacagag gagcgagagt acaagtgtga ccagtgtccc aaggccttca actggaagtc
     1201 caacctcatc cgccaccaga tgtcccacga cagtggcaag cgcttcgaat gtgaaaactg
     1261 tgtgaaggtg ttcacggacc ccagcaacct gcagcggcac atccgctccc agcacgtggg
     1321 cgcccgggcc cacgcctgcc ccgactgcgg gaagacgttc gccacgtcct cgggcctcaa
     1381 gcagcacaaa cacatccaca gcaccgtcaa acctttcata tgtgaggtct gccacaagtc
     1441 ctacacgcag ttctccaacc tgtgccgaca caagcgcatg cacgccgact gccgcacgca
     1501 gatcaagtgc aaggactgcg ggcagatgtt cagcactacc tcttccctca acaagcaccg
     1561 gcgcttctgc gagggcaaga accattacac gccgggcggc atcttcgctc caggcctgcc
     1621 cctgaccccc agccccatga tggacaaggc caagccgccc cccagcctca accacgccag
     1681 cctgggcttc aacgagtact tcccctccag gccgcacccg gggagcctgc ccttctcggc
     1741 ggcgcccccc gccttccccg cgctcacgcc cggcttcccg ggcgtcttcc ctccgtccct
     1801 ctacccccgg ccgcccctgc tacctcccat gccgctgctc aagagccccc ggaaccacac
     1861 gcaggacgcc aagctcccca gccccatggg caacccggcc ctgcccctcg tctccgccat
     1921 cggcagcagc ggccagggcg ccacggcggc cgcggggccc gaggagaagc cggagagccg
     1981 cctggaggac gcatacggcg ccaagctcaa gccccggggc agcgacctgt cagacggcag
     2041 cgacttcgag gatatcaaca ccacaaccgg gactgacctg gacacaacca cgggcacggg
     2101 ctccgacctg gacagcgacg tggacagcga tcgcgacaag accacggaca ggggcaaggc
     2161 ggccgagggc aagcgcgagt tcggcggtgg cgcggcggcg cccggcgccc cggagagcgc
     2221 cggcgaggtg cccgtcttct actcccagca cttcttcccg ccgcccgagg agcagctgct
     2281 gacagcgtcg ggcgccgcgg gcgactccat caaggccatt gcgtccatcg ccgagaagta
     2341 cttcgggccc ggcttcatgg gcgtgcagga gaagaagctg ggcgcactgc cctaccactc
     2401 cgtgttcccc ttccagttcc tgcccaactt cccccactcc ctgtacccct tcacagaccg
     2461 tgccctcgcg cacagcctgc tggtcaaggc cgagccaaag tcgccccggg acgccctcaa
     2521 ggccggtggc cccagcgccg agtcaccctt cgacctcacc accaaaccca aagaggccag
     2581 gcccgtcctg ccggcgccca aggcgccccc ggccccggcg tccggcgagg agcagccgct
     2641 ggacctgagc atcggcagcc gcgtgcgcgc cagccagaac ggagggaccc gggagccccg
     2701 caagaaccac gtgtacggcg agcgcaggct gggggccggt gaggggccgc ccaaggcatg
     2761 cccggcgcag ctgccccagc agccggccct gcactacgcc aggccgtcgc ccttcttcat
     2821 ggaccccatc tacagcaggg tggagaagcg gaaggtgacc gacccggtgg gagcccttaa
     2881 ggagaagtac ctgcggccgt ccccactgct cttccacccc cagatgtcag ccatcgagac
     2941 catgactgag aagctggaga gctttgcggc catgaaggcg gaatccggca gctccttgca
     3001 gcccctcccc ccccacccct tcaacttccg gtccccaccc ccgacgctct cggaccccat
     3061 cctcaggaag ggcaaggagc gctacacgtg caggtactgt ggcaagatct tcccccgatc
     3121 agcaaacctc acgagacacc tgaggacaca caccggggag cagccgtaca ggtgtaagta
     3181 ctgcgaccgg tccttcagca tctcctccaa cctccagcgg cacgtccgga acatccacaa
     3241 caaggagaag cccttcaaat gccacctgtg caaccgctgc ttcgggcagc agaccaacct
     3301 ggacagacac ctgaagaagc atgaacacga gcacgcacca gtgagccagc attcgggggt
     3361 cctcacgaac cacctggcga ccagcacctc ctcccccgcc tccgagtcgg accaccatgc
     3421 acttttagat gaaaaggaag actcctattt ctcagaaatc agaaacttta ttgccaacag
     3481 cgagatgaac caagcaacaa cgcgaacaga caaacggccg gaagtccagg acctggacgg
     3541 tgcccccccc gtggcccggg cctggccggc gggaaacctg aggacgcaga ggaggaggaa
     3601 gaggacgagc tggaggacga cggcgacagc ctggcgggga ggtcccagga cgacaccgtg
     3661 tgcccccacg ccggagcgcc aggctgcctg cgaggacgag gaggatgggc cccgcctccc
     3721 tggccatggg cttcgaccac acccgaaggt gtgttgagga gcgaccaggc ggtctgttgg
     3781 ctttggagcc gatgccagac tttgggaagg ggctggatct ccgcagagca gct
//
LOCUS       XM_032610330             700 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microsomal glutathione S-transferase 3
            (MGST3), mRNA.
ACCESSION   XM_032610330
VERSION     XM_032610330.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..700
                     /gene="MGST3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 3 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742587"
     CDS             133..591
                     /gene="MGST3"
                     /codon_start=1
                     /product="microsomal glutathione S-transferase 3"
                     /protein_id="XP_032466221.1"
                     /db_xref="GeneID:116742587"
                     /translation="MAVLSKEYGFVILTGAASFLMVTHLAINVSKARKKYKVEYPTMY
                     SNDPENGHLFNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRVVSGLGLAWIVGRVLYAY
                     GYYTGEPRKRKRGALSFIALIGLMGTTVCSAFQHLGWVRTGLSSGCKSCH"
     misc_feature    163..522
                     /gene="MGST3"
                     /note="MAPEG family; Region: MAPEG; pfam01124"
                     /db_xref="CDD:460074"
ORIGIN      
        1 gcgctgcccc gggagagggc ggggactact ccgggccacg cccaactctg caggagaaca
       61 agggtgccgc acctacagtt ccgctgcgca ctgcgttctg caccagccga gcgaaggtga
      121 tccagagtca ggatggccgt cctctctaag gaatatggtt tcgtgattct aactggtgct
      181 gccagcttcc taatggtaac tcatctagcc atcaacgttt ccaaggcccg caagaagtac
      241 aaagtggagt atcctacaat gtacagcaat gaccctgaaa acggacacct cttcaactgc
      301 attcagcggg cccaccagaa cacgttggaa gtgtaccctc ccttcttatt ttttctagct
      361 gtcggaggtg tttaccaccc acgtgtagtt tctggcttgg gcttggcctg gattgttgga
      421 cgagttcttt atgcttatgg ctattacaca ggagaaccta gaaagcggaa acggggagcc
      481 ctgagcttca tcgccctcat tggcctgatg ggcaccactg tgtgctctgc tttccagcat
      541 cttggttggg ttagaactgg cttgagcagt gggtgcaaaa gctgccatta aagagttata
      601 gggtgttttg aacctctcat tcattttgag tgacttttat tttcagtgac tttttttttt
      661 ccctaaataa aaacttacct ggcatcagcc tcatacctaa
//
LOCUS       XM_032610351            3196 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 40
            (LRRC40), mRNA.
ACCESSION   XM_032610351
VERSION     XM_032610351.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3196
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3196
                     /gene="LRRC40"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742604"
     CDS             43..1851
                     /gene="LRRC40"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 40"
                     /protein_id="XP_032466242.1"
                     /db_xref="GeneID:116742604"
                     /translation="MSRLKGAAGRDPRAGFRAERRDRGASVPQGLLKAARKSGQLNLS
                     GRNLSEVPQCVWRINVDIPEEANQNLSFSAAERWWEQTDLTKLIISNNKLQSLTDDLR
                     LLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNNLKILPEEITNLRNLKGLYLQH
                     NELTCIPRGFEQLSNLEDLDLSNNHLTTVPASFASLSSLLQLNLSSNQLKSLPAEISG
                     MKRLKHLDCNSNLLETIPSELASMESLELLYLRRNKLRFLPEFSSCKLLKELHVGENQ
                     IEILGAEHLKHLNSILVLDLRDNKLKSVPDEITLLQSLERLDLSNNDISSLPCSLGEL
                     HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSDSVTETAMTLPSESR
                     VNVHAIITLKILDYSDKQTTLIPDEVFDAVKSNIITSVNFSKNQLCEIPKRIVELKEM
                     VSDVNLSFNKLSFISLELCMLQKLTFIDLRNNFLNSLPEEMESLIRLQTINLSFNRFK
                     ILPEVLYRIPTLETILISNNQVGSVDPQKMKTMENLITLDLQNNDLLQIPPELGNCVN
                     LRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRIPT"
     misc_feature    154..291
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <244..1137
                     /gene="LRRC40"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    292..360
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    361..429
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    430..498
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    499..567
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    568..705
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    706..774
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    775..840
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    841..912
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    913..981
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    982..>1776
                     /gene="LRRC40"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1243..1314
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1321..1461
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1462..1530
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1531..1599
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1600..1671
                     /gene="LRRC40"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gcgtcactgg tggggctctg cttctgaaca ccgggtttga acatgtcgcg gctgaaggga
       61 gcagctgggc gggatccccg agcggggttc cgagctgaga ggagagaccg cggtgcctcc
      121 gtaccccagg ggctattaaa ggcggcgagg aagagcgggc agttaaacct gtcgggccgc
      181 aacctcagtg aagtgcctca gtgtgtttgg agaataaatg tggatatccc tgaagaagct
      241 aatcagaatc tttcattcag tgctgctgag cgatggtggg aacagacaga tttgaccaaa
      301 ctaatcatat caaacaataa acttcagtca cttactgatg acctccgact ccttcctgca
      361 ctgactgttc ttgatataca tgataatcag ctgacatccc ttccttctgc tataagagaa
      421 ttagaaaatc ttcagaaact taatgtcagc cataacaatc tgaaaatact ccctgaagaa
      481 attacaaatc taagaaacct gaagggccta tatctccagc ataatgaact aacttgcata
      541 ccaaggggat ttgaacaact ttccaactta gaagatttag atctttcgaa caatcatctt
      601 acaactgttc ctgctagttt tgcatctctg tccagcctgc tgcaactcaa tctttccagt
      661 aatcaactga agagtttgcc tgcagaaata agtggaatga aaagattaaa gcatttggat
      721 tgtaattcaa atctcttgga aactatacct tctgaattgg ctagcatgga atcactagaa
      781 ttgctttatt tgcggaggaa taaattacgt tttctaccgg aattttcttc ttgtaaatta
      841 ttaaaggaat tacatgtagg tgaaaaccag attgaaatat taggggcaga acaccttaag
      901 catctgaatt ctatccttgt gctagacctg cgagataaca agttaaaatc tgttccagat
      961 gaaattacac tcctacaatc tttggaaagg cttgacctaa gcaacaatga tattagtagt
     1021 ctgccctgtt cattgggaga acttcatttg aaattcctgg cactagaagg aaatcctttg
     1081 agaacgattc gaagagaaat tataaataaa ggaacccaag aagtcttaaa atatctacga
     1141 agcaagatta aagatgatgg acctagccaa agtgattctg ttactgagac tgccatgaca
     1201 ctaccaagtg aatctagagt caatgtacac gccatcatca cattaaaaat attagactat
     1261 agtgataaac aaacaacttt gattcctgat gaagtgtttg atgcagtaaa aagtaacatt
     1321 atcacttctg ttaacttcag taagaatcag ctatgtgaaa ttcccaaaag gattgtggaa
     1381 ctgaaagaaa tggtttctga tgtcaatctc agttttaata agctttcctt tatatccttg
     1441 gaattatgta tgcttcaaaa attaaccttt atagatctca ggaataattt tttaaattct
     1501 ttgcctgaag aaatggaatc attgataaga ctacaaacaa tcaacctttc ctttaatagg
     1561 ttcaaaatac tacctgaagt tctgtatcga attcccacac ttgaaacaat tttgattagt
     1621 aataatcagg ttggatctgt ggaccctcag aaaatgaaga caatggaaaa tctgattaca
     1681 ttggaccttc aaaataatga cctcctacaa attccaccag agctcggtaa ttgtgtgaac
     1741 ttaaggacat tgctactaga tggaaatccg ttccgcgttc ctcgagcagc catattaatg
     1801 aaaggaacag ctgctattct ggaatatttg agagaccgaa ttcctactta agttggagtt
     1861 gttacataat cttggtcatg ttaattctta gagttcttag attgataact aacatatttc
     1921 taaggtatca tgtacattta taatggtgta actacgtata gtgttcatac atttgctctg
     1981 aatgttttgc ataagattta tcctcacttt cattccctta taacacagca aacagtttct
     2041 tcagaagtga atttttattt atcacagttc aatattttta taatgacaaa gcattgttgt
     2101 agaggtgggt ttttttttcc catttctgtt tgtgttacgt atattatgac caattgactt
     2161 gaatatgacc atccaatttc taccttttta ttggatataa aattgaattg aattttattt
     2221 aatactgttc tttggcattt agaaaataat aagacttttc attatccata ataggacttt
     2281 tatgatgtgg ttggtgtcag tataagtttc aaattaatat ttactggctt gtttttgttt
     2341 atatagttga aatgtttttt ctaacctttt ttacatgttt cataaaatca ttttgtcggg
     2401 gtttctaatg tcacagaaat gctacataag atatggttat tggtggagag aatagtaaaa
     2461 gtgttgttat aattgctctc acaattctga atttaagaat tgcaaaacaa ttctgggttt
     2521 tgtttttttt taagatgttt tagtgttgtt tccatacagt aatctagtac ttctagattc
     2581 aacaaattta aagaaactgg atctgcatat ttttccctca gagtgtgagc atttaaaaaa
     2641 taccttttgt tctttaaaaa aagtactgaa attttattaa tttttatgga taacagcaac
     2701 agaaaataat agcatatact acatagaaat cttgaaatgt attttgttta aatacttact
     2761 aagcaggtat ttgtatatat aattactctg ttgatgtgtt ctaatccatc ctgtgccttt
     2821 ttttaatttc cagggtctta atttttaaat ttgcttgtag tcatgtggta attttctaaa
     2881 agggaatttg ttatatttga taaaaatcaa atataaacat ttataccaaa aatatcagaa
     2941 gtaagtaggc tagtcagtca ttataaaaca tactatgtga ttctattaag taactaatca
     3001 atagaatgta tattagttta tataaataga tggatggata ggtacgtagg acgtaggtag
     3061 gtagatagat agacaggtgg atggatggat agatagcttt tggatgattg agacatgctc
     3121 atattatgaa aaaaatcatt gctaataaag ataaatacta cgtgttcatt aaaaagttac
     3181 atttttcaaa tattga
//
LOCUS       XM_032610364            5593 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol 3-kinase regulatory
            subunit gamma (LOC116742613), mRNA.
ACCESSION   XM_032610364
VERSION     XM_032610364.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5593
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5593
                     /gene="LOC116742613"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 34
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742613"
     CDS             762..2147
                     /gene="LOC116742613"
                     /codon_start=1
                     /product="phosphatidylinositol 3-kinase regulatory subunit
                     gamma"
                     /protein_id="XP_032466255.1"
                     /db_xref="GeneID:116742613"
                     /translation="MYNTVWSMDRDDADWREVMMPYSTELIFYIEMDPPALPPKPPKP
                     MTSAITNGMKDGSVSLQDAEWYWGDISREEVNDKLRDMPDGTFLVRDASTKMQGDYTL
                     TLRKGGNNKLIKIYHRDGKYGFSDPLTFNSVVELISHYHHESLAQYNPKLDVKLMYPV
                     SRYQQDQLVKEDNIDAVGKKLQEYHSQYQEKSKEYDRLYEEYTRTSQEIQMKRTAIEA
                     FNETIKIFEEQCHTQEQHSKEYIERFRKEGNEKEIERIMMNYDKLKSRLGEIHDSKMR
                     LEQDLKKQALDNREIDKKMNSIKPDLIQLRKIRDQHLVWLNHKGVRQKRLNAWLGIKN
                     EDAAETYFINEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYA
                     CSVVADGEVKHCVIYSTARGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVRLAY
                     PVHAQMPSLCR"
     misc_feature    936..1262
                     /gene="LOC116742613"
                     /note="N-terminal Src homology 2 (nSH2) domain found in
                     p85; Region: SH2_nSH2_p85_like; cd09942"
                     /db_xref="CDD:198195"
     misc_feature    order(975..977,1029..1031,1095..1097,1101..1103)
                     /gene="LOC116742613"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198195"
     misc_feature    order(1098..1100,1179..1181)
                     /gene="LOC116742613"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198195"
     misc_feature    1275..1757
                     /gene="LOC116742613"
                     /note="Inter-Src homology 2 (iSH2) helical domain of Class
                     IA Phosphoinositide 3-kinase Regulatory subunits; Region:
                     iSH2_PI3K_IA_R; cl25402"
                     /db_xref="CDD:355389"
     misc_feature    order(1344..1346,1365..1367,1398..1406,1410..1418,
                     1422..1427,1434..1439,1443..1448,1455..1460,1467..1469,
                     1515..1517,1524..1529,1536..1538,1548..1550,1557..1559,
                     1635..1640,1647..1649,1656..1658)
                     /gene="LOC116742613"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:214016"
     misc_feature    1812..2123
                     /gene="LOC116742613"
                     /note="C-terminal Src homology 2 (cSH2) domain found in
                     p85; Region: SH2_cSH2_p85_like; cd09930"
                     /db_xref="CDD:198184"
     misc_feature    order(1854..1856,1908..1910,1914..1919,1968..1970,
                     1974..1976)
                     /gene="LOC116742613"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198184"
     misc_feature    order(1971..1973,2004..2006,2070..2072,2079..2081,
                     2091..2093)
                     /gene="LOC116742613"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198184"
ORIGIN      
        1 gggagagcgt gggggcgggg gagggtgtcc cccctccgcg ccgttaaaat gaaactctag
       61 tggcttgagt cagggcagag cgtgagggga gccggcgctg gcgagcttgc ttgcagccgg
      121 gcgggagcgc acggccaagc agagataact ggacactcgg acgggccccc atccccaggc
      181 tgcagcggct tcggttccga gcccgaccgg aacggagccc gagtcctggc ccctgagggg
      241 atttctcccc gcagaccagt gggaccccga aacttgaacg caatacccaa cctccttttt
      301 atgccttcct ttgtcactta cccacctttc tcccagcgcg ttcttttccc ccccctctct
      361 attctccctc tttcgaagga cacaaaagtg gcttccgcgg aaagatttga aggcggtggg
      421 agctttttct ctttggagaa cgaccgtgta ggagggattt tggggaagcc gctttttaac
      481 acttctgccc tccgcccccc aagcctttct gtaccccttc gaggagaaga gcccgtagat
      541 tgaacgttcg gggggcattt tgctggctgc caaagcagga gcggggaaga ggaccccgtc
      601 cttgtcctgg tagttggctg gacttgtacc ggccgtcgga aaccccgaag tacatttccg
      661 agtgggactt ttacagatat atatttttag atttttaaat agcagataaa aaaaatatat
      721 gctttctata tatttcctga cgacctgccc ctgacagcgc gatgtacaat acggtgtgga
      781 gtatggaccg cgatgacgca gactggaggg aggtgatgat gccctattcg acagaactga
      841 tattttatat tgaaatggat cctccagctc ttccaccaaa gccacctaag ccaatgactt
      901 cagccattac aaatggaatg aaggacggtt ctgtttctct tcaggatgca gaatggtact
      961 ggggggatat ttcaagggag gaggtaaatg acaaattacg ggacatgcca gacggtacct
     1021 tcttggtcag agatgcctca acaaaaatgc agggagatta cactttgact ctgcggaagg
     1081 gaggcaataa taagctaata aagatatatc atcgagatgg taaatatggc ttttctgatc
     1141 ctctgacatt taattctgtg gtggagctca ttagccacta tcatcatgaa tctcttgctc
     1201 agtacaatcc caaacttgat gtgaagctga tgtacccagt gtccagatac caacaggatc
     1261 agttggtaaa agaagataac attgatgcag taggtaaaaa actgcaagag tatcactctc
     1321 agtatcagga aaagagtaaa gagtatgaca ggctatatga agaatatacc agaacatccc
     1381 aggaaataca gatgaagagg actgcaattg aagcttttaa tgaaacaatt aaaatatttg
     1441 aagagcagtg tcatacacaa gaacaacata gcaaagaata tattgagcga tttcggaaag
     1501 aggggaatga aaaggaaatt gaacgaatta tgatgaacta tgacaaatta aaatcacgtc
     1561 tgggtgagat tcatgatagc aaaatgcgtc tagagcagga tttgaagaaa caagctttgg
     1621 acaaccggga aatagataaa aaaatgaaca gtatcaaacc tgacctgatc cagctgcgca
     1681 agatccgaga tcagcacctt gtgtggctca atcacaaagg agtaagacag aagcgcctaa
     1741 atgcctggct gggaatcaag aatgaggatg ctgctgagac ctattttatc aatgaggaag
     1801 atgaaaacct gccccattat gatgagaaaa cctggtttgt tgaggatatc aatcgagtac
     1861 aagcagagga cttgctttat gggaaacctg atggtgcatt cttaattcgt gagagtagca
     1921 agaaaggatg ttatgcttgc tctgtggttg ctgatgggga agtgaagcac tgcgtgatct
     1981 acagcactgc tcggggctat ggctttgcag agccctacaa cctgtacagc tcactgaagg
     2041 agctggtgct ccattaccag catacatccc tcgtccagca caatgactcc ctcaacgtca
     2101 ggcttgccta ccctgtccac gcacagatgc cctcgctctg cagataaaga gggagtggga
     2161 agagcggtgg ctctctagcg atttttatac agtttttatt agactatgag ggcattcttt
     2221 ctacgtagac tgcttgtttt gcacaagaag tgattctgtg aatgtgaagt ggagaggccg
     2281 agcagcagcc ggccagaatg ggggcataca gggcctgggg ttctctgtga ctcaccgctg
     2341 cactgacata ggaagctggg agcggatgct gttttttgga aagtctgttt cattggggtt
     2401 tttatttagc caggcaccct caacagaaca cattaggcct gatgggggtg agggttatat
     2461 ctggaagcct ctgaggagcc catgtcctct tctgagaggc catgttgctc tgagagtgtg
     2521 gtggggcatg gcccctcttt cttcctccca acaaggcggt ggtcttggtt tggtggtaga
     2581 atggcatttg gtgaaaaaga caaccaaagg aaaatgggga ggcttgggat ttcatttaaa
     2641 gaatcttaat ccatgggtaa aaaactttca accgaaggta cttaaccaac atcgtttagg
     2701 cgtcagcatc tcagtagctc ctccctttaa agaagcatta tgtttagaaa ccaaattgat
     2761 cccagcaaaa cgattgttgc cagactaagg tctgatggaa gaaggcggca ctagtatctg
     2821 aatgcacact tctgtaccaa aacttgaaag taaaactaga gactttgtta gttttagcaa
     2881 acactaaaat tggtcagtgt aactcctttt gccctgccct tgtttctctg aggtgaggaa
     2941 tagtgttctt ttcgtgggct ggtgagcttt gaatcataaa atgaagttgg tacttgtgtg
     3001 gtgtttcctt agcctaaaga atgatctgtt gtttgaaacc tttgtaactt gtgtgtatga
     3061 gtaaagaaaa ggtgcaatcc agtgctttta gatggcttga tataccaaat aatgatgtag
     3121 aacaacattc ttatatgtgc ttccccaagt ttaaatgccc agcagaaata gtcaacatgg
     3181 tttaatttcc cgtcatctcc tgtcgtttgc tgggtagggc ccaggggaac cataggtggc
     3241 taaggctgta gctggaaggg agccagactg cggtcaggga cttcagtaaa tcacaggccc
     3301 aagggctctg gtttccaggg cgagggtcat accacattac ccatgtgctt ccatacagtg
     3361 gtttctgaaa cttttgcaag gagaggaagg gatggcttgg agtttagact gttagccgaa
     3421 gccatctgga agcttttttc tttgccttct ttgtgatcct gccattaaga tgatgtgcac
     3481 agaccgtcct catgctccag tggccctgat tttaggccag gaatcttctg cttcatgtga
     3541 tttaagcctt ccagctgagt gaagctgggc aaatggagct ggaggcagcc tctactccta
     3601 cctccattat gccccaccct cctcagtcaa cactcctttg acaaatagag tccagctgcc
     3661 tctgagccaa tcctagagcc ataataggct cgaatgagtc agctgtttga gcccaaagct
     3721 gtgcagtcag gcatcctggc tgagctacag aagtcaatat ctgagtcttg gtgaataaat
     3781 aaggtttaca cctagggaaa ctctagcttt ggggatgaaa gaaacaaatt ttgctttccc
     3841 tgagcaccta tcttggtggc aggatctaga atggaccatg acatagaaat agattaaaaa
     3901 tttgggggag aacctccaga gttactgaca gtgaagatag aaagaaaagg ggcatatctt
     3961 tggcttttcc ttggttatgt tgcagtttca ggattgagtg aggcagacag atgaaacccc
     4021 ctccagtgtc actgttctga cctaagccct taactagttg atagccagct gaaatccctt
     4081 ccccatattg ccagattgtt gaacctgcct aagcagctag atgctcaaga ttgggtgcaa
     4141 ggaatccctt ctttctggta ctaaaattta gtgtgtcctg gatatctctt aaacgaaaag
     4201 gagaatgagg atgaaccatg tgttgctcct tatcaggcag cattaagggt gtgcagggag
     4261 agcgcaagcg ccatctaccg tttacacttg ggctggcttg tggagaaggg ctactcattt
     4321 ttaagtcata cattccttca cttttttctt tcctgttttt cattactgaa tttgttgctt
     4381 tgtgggaact aagacctagg gatcatttga gaagttggaa agtatctttt ctgagtagtt
     4441 gccatgtgat ttgcttgatc ttgaccagtg gaaatggcat agggaccagt ctgctaacca
     4501 ctcagagggg tagtatgcag ctcttttact ccatggtctt ggcagcaggt cttggcctcc
     4561 ttcctcagaa cctagctgtg tgtgttatcc catgatctgg gccctgggat tctctctccg
     4621 catcttaact gcagcctcag tgaggcagag ggtaaagaga cagaccaaga ccagaggggc
     4681 tccttgtttt cctggctaga gaagctggcc accaacacgg aagcagcttg gggctggctg
     4741 gacactggtc agaggcctat cttttccagg tcgagctttc atcacagaac aatgctctgt
     4801 ctccatctgg ccatagatgc taactaagcc ttggccatgc ctcaggcctg tataggctag
     4861 tggtgtcctt accactgatt tggtcaaggt tgaggacttc tgattaccgc ccctaccctg
     4921 tctccaggcc tcgatgaaat ccccgcttat tttggaccct caagtgcttt gcagaagctc
     4981 tgagagccaa tgtggtgtct tccaccagtc tcctcttgca gcaaggaacc agcctcatgg
     5041 gtcctcttgg gccaagaatt gcatctgggc aattactggt ttttcaagtt ggtctcttgc
     5101 cagttaagac tccttagtag atctgtttga ggcttcaatg gcctcaaagc agagggtcca
     5161 gatgggggcc tggctgggcc ctctgctgtc acctgctcag ccttgctcta actccagcca
     5221 cttgtgacag acaaccttgt ttccttacaa actccagcat gtgactttgg tgccctgttg
     5281 ttactcgtga aaaacctatt cttctgttgt ctttggtgta gtcaaaaaaa ttcatgtagt
     5341 tacgtaaaaa tatcggattt acaaggaagc caactgtatg tcttgtgttg ggacaattca
     5401 taatgtagtt cctagaccac ttttgcaaat tgttcttgtc accaggtgtg ttcagacatt
     5461 gctgtgcagt tgtgggggag ggtgggggga aggtgagggg agatactttt tggtcttttt
     5521 gttttttacc ttccccaagt ggggacagtc tggccaactt gctccagtaa tacaataaag
     5581 acattgcaat aaa
//
LOCUS       XM_032610379            2323 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DEAD-box helicase 59 (DDX59), transcript
            variant X1, mRNA.
ACCESSION   XM_032610379
VERSION     XM_032610379.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2323
                     /gene="DDX59"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742621"
     CDS             209..2074
                     /gene="DDX59"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX59
                     isoform X1"
                     /protein_id="XP_032466270.1"
                     /db_xref="GeneID:116742621"
                     /translation="MFVPRSLKVRRNANDDGRSCAAKKVKPEAEDPQLGAGGDGPADD
                     ASGTKEAALAAHHGAQPCPLPGPASQVSEGGLAGPGQRAQDSDLLEEPVKSFSKMQRQ
                     AEPGEPVCVVCGRYGEYICNETDEDVCSLECKAKHLLQVRGAEAPLAPGGPQKAGSEP
                     AAPHPASYVYTEHAFISNLREDQIENLRRQLGIVVQGPGVPRPIIDFEHCGFPEALNL
                     NLKTSGYEVPTPIQMQMVPLGLLGRDVLASADTGSGKTAAFLLPVIMRALFQSKMPSA
                     LILTPTRELAIQIERQAKELVSGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGR
                     LLDIIKQGAVELGGIKIVVVDEADTMLKMGFQQQVLDVLENVPHDCQTLLASATIPAS
                     IEQLASQLLRDPVRIITGEKNLPCSNVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVL
                     VFVDCKLGADLLSEAVQKITGLKSTSVHSEKPQPERKNILKGLLEGDYEVVVSTGVLG
                     RGLDLVSVKLVVNFDMPPSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRV
                     KPTGSLLPPQLLNSPYLHDQRRKEQQKDKQMQNDLVTGANLMDIIRKHDKSNSQK"
     misc_feature    479..1987
                     /gene="DDX59"
                     /note="DEAD-box ATP-dependent RNA helicase; Provisional;
                     Region: PLN00206"
                     /db_xref="CDD:215103"
ORIGIN      
        1 tccggcctct ccgtcgggcc ccgccttccc cgcgcgcagc ggcgcatccc aaaagtcggg
       61 aaagtggaat ctgcgctccg cacggttccc cagctgcagg gtggccgcgt ggccgggctc
      121 atcggccgga agcccggccc agcgcctcaa gggggagccg ccccgagagg gagtggacgc
      181 ggccgcagtc cgcgcggaat attgaaggat gtttgttcca agatccctga aagtcaggcg
      241 gaatgctaac gatgatggta gaagttgtgc agccaagaaa gtcaaaccag aagcagaaga
      301 cccccagctg ggtgcgggcg gggatggtcc agccgatgat gcctcgggta ccaaagaagc
      361 tgcgctagcg gcgcatcacg gcgcccagcc gtgccctctc cccgggcctg ccagccaggt
      421 gtctgagggg ggtctggctg gacctgggca acgggcgcag gacagcgatc tcctcgaaga
      481 gccggtgaag tccttctcca aaatgcagcg ccaggccgag cccggggagc cggtgtgcgt
      541 ggtatgcggg cgctacggag agtacatctg caatgagacg gatgaagacg tgtgtagcct
      601 ggagtgtaaa gcaaaacacc ttctgcaggt gcgcggcgcg gaggcgccgt tagcgccggg
      661 cggtccacag aaagcgggct ctgagccagc ggctccacat cctgcttcgt atgtctacac
      721 cgagcacgcc ttcatctcga accttcggga ggaccagatt gaaaacctca gacggcagct
      781 gggaatcgtg gttcaggggc caggcgtccc caggcccatc attgactttg agcattgtgg
      841 cttccctgag gccttaaacc tcaacctgaa gacctcgggc tacgaggtcc ccacccccat
      901 ccagatgcag atggtccccc tggggcttct gggccgagac gtgctggcca gcgcggacac
      961 cggctctggg aagacggccg ccttcctgct tcccgtcatc atgcgagctc tgtttcagag
     1021 caagatgccg tccgcgctca tcctcacgcc cacgcgggag ctggccatcc agatagagcg
     1081 ccaggccaag gaactggtga gcggcctgcc ccgcatgagg actgcgctcc tggtgggggg
     1141 cctgcccgcc cccccgcagc tccatcgctt gcgccagcgc gttcaggtta tcatagcaac
     1201 tcctgggcga cttctggata taataaagca gggcgctgta gaacttggcg gtataaaaat
     1261 tgtagtagtg gatgaagctg ataccatgtt aaagatgggc tttcaacagc aagtgcttga
     1321 cgttttggaa aatgtgcctc atgactgtca gacccttttg gcttcagcca cgattccagc
     1381 cagcatagag cagctcgcca gccagcttct gcgcgacccc gtgagaatca tcactgggga
     1441 gaagaacctg ccctgctcca acgtgcgcca gattgtgtta tgggtggaag aaccagccaa
     1501 aaagaagaaa ctgtttgaaa tcttgaatga taagaaactc tttaagcctc cagtgttagt
     1561 atttgtggac tgcaaactag gagcagatct gttgagcgag gccgttcaga aaatcacagg
     1621 tctgaaaagc acctctgtgc actcggaaaa gccccagccg gaaaggaaga acatactgaa
     1681 gggtttactt gaaggagact atgaagttgt cgtgagcacg ggggtcctag gaagaggcct
     1741 ggacttggtc agcgtcaagc tggttgtcaa tttcgacatg cctcccagca tggatgagta
     1801 cgtgcatcag gttggaagag tggggagatt aggtcagaat ggaacagcga ttactttcat
     1861 caataacaac tcgaaaagac tcttctggga tattgcaaaa cgagtgaaac ccacagggtc
     1921 ccttctcccc ccccagttgt taaattcccc ttaccttcac gaccagagga gaaaggagca
     1981 gcagaaggat aaacagatgc agaatgatct ggttacgggg gctaatctca tggacattat
     2041 tagaaaacat gataaaagta attctcaaaa atgatttatg ataccacgtt gaataatttt
     2101 ttttgcatat tgtcagtgaa atttctgtac attattcctg gatggttcga tgaatgtgac
     2161 atgcacatga aacaaaaagt taacatgatg taaaaagttt taatagacta tcaaatttat
     2221 acagcaatat tgtatttatt ttccttttta attttcataa attaaaaaca accaccgaaa
     2281 gtgaattact aaatggagta aaaatttctt ctctctggaa aaa
//
LOCUS       XM_032610389            2309 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DEAD-box helicase 59 (DDX59), transcript
            variant X2, mRNA.
ACCESSION   XM_032610389
VERSION     XM_032610389.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2309
                     /gene="DDX59"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 6
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116742621"
     CDS             195..2060
                     /gene="DDX59"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX59
                     isoform X1"
                     /protein_id="XP_032466280.1"
                     /db_xref="GeneID:116742621"
                     /translation="MFVPRSLKVRRNANDDGRSCAAKKVKPEAEDPQLGAGGDGPADD
                     ASGTKEAALAAHHGAQPCPLPGPASQVSEGGLAGPGQRAQDSDLLEEPVKSFSKMQRQ
                     AEPGEPVCVVCGRYGEYICNETDEDVCSLECKAKHLLQVRGAEAPLAPGGPQKAGSEP
                     AAPHPASYVYTEHAFISNLREDQIENLRRQLGIVVQGPGVPRPIIDFEHCGFPEALNL
                     NLKTSGYEVPTPIQMQMVPLGLLGRDVLASADTGSGKTAAFLLPVIMRALFQSKMPSA
                     LILTPTRELAIQIERQAKELVSGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGR
                     LLDIIKQGAVELGGIKIVVVDEADTMLKMGFQQQVLDVLENVPHDCQTLLASATIPAS
                     IEQLASQLLRDPVRIITGEKNLPCSNVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVL
                     VFVDCKLGADLLSEAVQKITGLKSTSVHSEKPQPERKNILKGLLEGDYEVVVSTGVLG
                     RGLDLVSVKLVVNFDMPPSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRV
                     KPTGSLLPPQLLNSPYLHDQRRKEQQKDKQMQNDLVTGANLMDIIRKHDKSNSQK"
     misc_feature    465..1973
                     /gene="DDX59"
                     /note="DEAD-box ATP-dependent RNA helicase; Provisional;
                     Region: PLN00206"
                     /db_xref="CDD:215103"
ORIGIN      
        1 gacgtcgggg ggagggacga cgcccagggg gaggggaggg gcgttggcgc gaactggagc
       61 aacgcgtctg cagccccccc agctccgcct ctgttccgtc gcggggacct gcgtttcgag
      121 ctgctccctc tcgagtgcag ccgcccccca cccccacccc cttgaccttt tcggggactt
      181 gagaatattg aaggatgttt gttccaagat ccctgaaagt caggcggaat gctaacgatg
      241 atggtagaag ttgtgcagcc aagaaagtca aaccagaagc agaagacccc cagctgggtg
      301 cgggcgggga tggtccagcc gatgatgcct cgggtaccaa agaagctgcg ctagcggcgc
      361 atcacggcgc ccagccgtgc cctctccccg ggcctgccag ccaggtgtct gaggggggtc
      421 tggctggacc tgggcaacgg gcgcaggaca gcgatctcct cgaagagccg gtgaagtcct
      481 tctccaaaat gcagcgccag gccgagcccg gggagccggt gtgcgtggta tgcgggcgct
      541 acggagagta catctgcaat gagacggatg aagacgtgtg tagcctggag tgtaaagcaa
      601 aacaccttct gcaggtgcgc ggcgcggagg cgccgttagc gccgggcggt ccacagaaag
      661 cgggctctga gccagcggct ccacatcctg cttcgtatgt ctacaccgag cacgccttca
      721 tctcgaacct tcgggaggac cagattgaaa acctcagacg gcagctggga atcgtggttc
      781 aggggccagg cgtccccagg cccatcattg actttgagca ttgtggcttc cctgaggcct
      841 taaacctcaa cctgaagacc tcgggctacg aggtccccac ccccatccag atgcagatgg
      901 tccccctggg gcttctgggc cgagacgtgc tggccagcgc ggacaccggc tctgggaaga
      961 cggccgcctt cctgcttccc gtcatcatgc gagctctgtt tcagagcaag atgccgtccg
     1021 cgctcatcct cacgcccacg cgggagctgg ccatccagat agagcgccag gccaaggaac
     1081 tggtgagcgg cctgccccgc atgaggactg cgctcctggt ggggggcctg cccgcccccc
     1141 cgcagctcca tcgcttgcgc cagcgcgttc aggttatcat agcaactcct gggcgacttc
     1201 tggatataat aaagcagggc gctgtagaac ttggcggtat aaaaattgta gtagtggatg
     1261 aagctgatac catgttaaag atgggctttc aacagcaagt gcttgacgtt ttggaaaatg
     1321 tgcctcatga ctgtcagacc cttttggctt cagccacgat tccagccagc atagagcagc
     1381 tcgccagcca gcttctgcgc gaccccgtga gaatcatcac tggggagaag aacctgccct
     1441 gctccaacgt gcgccagatt gtgttatggg tggaagaacc agccaaaaag aagaaactgt
     1501 ttgaaatctt gaatgataag aaactcttta agcctccagt gttagtattt gtggactgca
     1561 aactaggagc agatctgttg agcgaggccg ttcagaaaat cacaggtctg aaaagcacct
     1621 ctgtgcactc ggaaaagccc cagccggaaa ggaagaacat actgaagggt ttacttgaag
     1681 gagactatga agttgtcgtg agcacggggg tcctaggaag aggcctggac ttggtcagcg
     1741 tcaagctggt tgtcaatttc gacatgcctc ccagcatgga tgagtacgtg catcaggttg
     1801 gaagagtggg gagattaggt cagaatggaa cagcgattac tttcatcaat aacaactcga
     1861 aaagactctt ctgggatatt gcaaaacgag tgaaacccac agggtccctt ctcccccccc
     1921 agttgttaaa ttccccttac cttcacgacc agaggagaaa ggagcagcag aaggataaac
     1981 agatgcagaa tgatctggtt acgggggcta atctcatgga cattattaga aaacatgata
     2041 aaagtaattc tcaaaaatga tttatgatac cacgttgaat aatttttttt gcatattgtc
     2101 agtgaaattt ctgtacatta ttcctggatg gttcgatgaa tgtgacatgc acatgaaaca
     2161 aaaagttaac atgatgtaaa aagttttaat agactatcaa atttatacag caatattgta
     2221 tttattttcc tttttaattt tcataaatta aaaacaacca ccgaaagtga attactaaat
     2281 ggagtaaaaa tttcttctct ctggaaaaa
//
LOCUS       XM_032610397            2456 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DEAD-box helicase 59 (DDX59), transcript
            variant X3, mRNA.
ACCESSION   XM_032610397
VERSION     XM_032610397.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2456
                     /gene="DDX59"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742621"
     CDS             342..2207
                     /gene="DDX59"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX59
                     isoform X1"
                     /protein_id="XP_032466288.1"
                     /db_xref="GeneID:116742621"
                     /translation="MFVPRSLKVRRNANDDGRSCAAKKVKPEAEDPQLGAGGDGPADD
                     ASGTKEAALAAHHGAQPCPLPGPASQVSEGGLAGPGQRAQDSDLLEEPVKSFSKMQRQ
                     AEPGEPVCVVCGRYGEYICNETDEDVCSLECKAKHLLQVRGAEAPLAPGGPQKAGSEP
                     AAPHPASYVYTEHAFISNLREDQIENLRRQLGIVVQGPGVPRPIIDFEHCGFPEALNL
                     NLKTSGYEVPTPIQMQMVPLGLLGRDVLASADTGSGKTAAFLLPVIMRALFQSKMPSA
                     LILTPTRELAIQIERQAKELVSGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGR
                     LLDIIKQGAVELGGIKIVVVDEADTMLKMGFQQQVLDVLENVPHDCQTLLASATIPAS
                     IEQLASQLLRDPVRIITGEKNLPCSNVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVL
                     VFVDCKLGADLLSEAVQKITGLKSTSVHSEKPQPERKNILKGLLEGDYEVVVSTGVLG
                     RGLDLVSVKLVVNFDMPPSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRV
                     KPTGSLLPPQLLNSPYLHDQRRKEQQKDKQMQNDLVTGANLMDIIRKHDKSNSQK"
     misc_feature    612..2120
                     /gene="DDX59"
                     /note="DEAD-box ATP-dependent RNA helicase; Provisional;
                     Region: PLN00206"
                     /db_xref="CDD:215103"
ORIGIN      
        1 gccgcccccc acccccaccc ccttgacctt ttcggggact tgaggtggta accctagacc
       61 ttcacttgta atttcgttgg aatttttctg gaaaaatgga atctggcaat gtatcctgag
      121 aatttttgtt ttgagaaaaa tgtttcttag cgtatttggc agccccccaa attaggttaa
      181 agcctgttta ccaaacgctg tcattttgca aaaacctgtt tggttgtaaa tgggaagcgc
      241 tgtggttgga ggcttgcaca cgctgagaag gtgtgagctt caagtccctc agcctccagg
      301 tgctgagtcc cccgtgagaa ctgaccccac aatattgaag gatgtttgtt ccaagatccc
      361 tgaaagtcag gcggaatgct aacgatgatg gtagaagttg tgcagccaag aaagtcaaac
      421 cagaagcaga agacccccag ctgggtgcgg gcggggatgg tccagccgat gatgcctcgg
      481 gtaccaaaga agctgcgcta gcggcgcatc acggcgccca gccgtgccct ctccccgggc
      541 ctgccagcca ggtgtctgag gggggtctgg ctggacctgg gcaacgggcg caggacagcg
      601 atctcctcga agagccggtg aagtccttct ccaaaatgca gcgccaggcc gagcccgggg
      661 agccggtgtg cgtggtatgc gggcgctacg gagagtacat ctgcaatgag acggatgaag
      721 acgtgtgtag cctggagtgt aaagcaaaac accttctgca ggtgcgcggc gcggaggcgc
      781 cgttagcgcc gggcggtcca cagaaagcgg gctctgagcc agcggctcca catcctgctt
      841 cgtatgtcta caccgagcac gccttcatct cgaaccttcg ggaggaccag attgaaaacc
      901 tcagacggca gctgggaatc gtggttcagg ggccaggcgt ccccaggccc atcattgact
      961 ttgagcattg tggcttccct gaggccttaa acctcaacct gaagacctcg ggctacgagg
     1021 tccccacccc catccagatg cagatggtcc ccctggggct tctgggccga gacgtgctgg
     1081 ccagcgcgga caccggctct gggaagacgg ccgccttcct gcttcccgtc atcatgcgag
     1141 ctctgtttca gagcaagatg ccgtccgcgc tcatcctcac gcccacgcgg gagctggcca
     1201 tccagataga gcgccaggcc aaggaactgg tgagcggcct gccccgcatg aggactgcgc
     1261 tcctggtggg gggcctgccc gcccccccgc agctccatcg cttgcgccag cgcgttcagg
     1321 ttatcatagc aactcctggg cgacttctgg atataataaa gcagggcgct gtagaacttg
     1381 gcggtataaa aattgtagta gtggatgaag ctgataccat gttaaagatg ggctttcaac
     1441 agcaagtgct tgacgttttg gaaaatgtgc ctcatgactg tcagaccctt ttggcttcag
     1501 ccacgattcc agccagcata gagcagctcg ccagccagct tctgcgcgac cccgtgagaa
     1561 tcatcactgg ggagaagaac ctgccctgct ccaacgtgcg ccagattgtg ttatgggtgg
     1621 aagaaccagc caaaaagaag aaactgtttg aaatcttgaa tgataagaaa ctctttaagc
     1681 ctccagtgtt agtatttgtg gactgcaaac taggagcaga tctgttgagc gaggccgttc
     1741 agaaaatcac aggtctgaaa agcacctctg tgcactcgga aaagccccag ccggaaagga
     1801 agaacatact gaagggttta cttgaaggag actatgaagt tgtcgtgagc acgggggtcc
     1861 taggaagagg cctggacttg gtcagcgtca agctggttgt caatttcgac atgcctccca
     1921 gcatggatga gtacgtgcat caggttggaa gagtggggag attaggtcag aatggaacag
     1981 cgattacttt catcaataac aactcgaaaa gactcttctg ggatattgca aaacgagtga
     2041 aacccacagg gtcccttctc cccccccagt tgttaaattc cccttacctt cacgaccaga
     2101 ggagaaagga gcagcagaag gataaacaga tgcagaatga tctggttacg ggggctaatc
     2161 tcatggacat tattagaaaa catgataaaa gtaattctca aaaatgattt atgataccac
     2221 gttgaataat tttttttgca tattgtcagt gaaatttctg tacattattc ctggatggtt
     2281 cgatgaatgt gacatgcaca tgaaacaaaa agttaacatg atgtaaaaag ttttaataga
     2341 ctatcaaatt tatacagcaa tattgtattt attttccttt ttaattttca taaattaaaa
     2401 acaaccaccg aaagtgaatt actaaatgga gtaaaaattt cttctctctg gaaaaa
//
LOCUS       XM_032610403            2155 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DEAD-box helicase 59 (DDX59), transcript
            variant X4, mRNA.
ACCESSION   XM_032610403
VERSION     XM_032610403.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2155
                     /gene="DDX59"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116742621"
     CDS             209..1906
                     /gene="DDX59"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX59
                     isoform X2"
                     /protein_id="XP_032466294.1"
                     /db_xref="GeneID:116742621"
                     /translation="MFVPRSLKVRRNANDDGRSCAAKKVKPEAEDPQLGAGGDGPADD
                     ASGTKEAALAAHHGAQPCPLPGPASQVSEGGLAGPGQRAQDSDLLEEPVKSFSKMQRQ
                     AEPGEPVCVVCGRYGEYICNETDEDVCSLECKAKHLLQVRGAEAPLAPGGPQKAGSEP
                     AAPHPASYVYTEHAFISNLREDQIENLRRQLGIVVQGPGVPRPIIDFEHCGFPEALNL
                     NLKTSGYEVPTPIQMQMVPLGLLGRDVLASADTGSGKTAAFLLPVIMRALFQVIIATP
                     GRLLDIIKQGAVELGGIKIVVVDEADTMLKMGFQQQVLDVLENVPHDCQTLLASATIP
                     ASIEQLASQLLRDPVRIITGEKNLPCSNVRQIVLWVEEPAKKKKLFEILNDKKLFKPP
                     VLVFVDCKLGADLLSEAVQKITGLKSTSVHSEKPQPERKNILKGLLEGDYEVVVSTGV
                     LGRGLDLVSVKLVVNFDMPPSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAK
                     RVKPTGSLLPPQLLNSPYLHDQRRKEQQKDKQMQNDLVTGANLMDIIRKHDKSNSQK"
     misc_feature    479..1819
                     /gene="DDX59"
                     /note="DEAD-box ATP-dependent RNA helicase; Provisional;
                     Region: PLN00206"
                     /db_xref="CDD:215103"
ORIGIN      
        1 tccggcctct ccgtcgggcc ccgccttccc cgcgcgcagc ggcgcatccc aaaagtcggg
       61 aaagtggaat ctgcgctccg cacggttccc cagctgcagg gtggccgcgt ggccgggctc
      121 atcggccgga agcccggccc agcgcctcaa gggggagccg ccccgagagg gagtggacgc
      181 ggccgcagtc cgcgcggaat attgaaggat gtttgttcca agatccctga aagtcaggcg
      241 gaatgctaac gatgatggta gaagttgtgc agccaagaaa gtcaaaccag aagcagaaga
      301 cccccagctg ggtgcgggcg gggatggtcc agccgatgat gcctcgggta ccaaagaagc
      361 tgcgctagcg gcgcatcacg gcgcccagcc gtgccctctc cccgggcctg ccagccaggt
      421 gtctgagggg ggtctggctg gacctgggca acgggcgcag gacagcgatc tcctcgaaga
      481 gccggtgaag tccttctcca aaatgcagcg ccaggccgag cccggggagc cggtgtgcgt
      541 ggtatgcggg cgctacggag agtacatctg caatgagacg gatgaagacg tgtgtagcct
      601 ggagtgtaaa gcaaaacacc ttctgcaggt gcgcggcgcg gaggcgccgt tagcgccggg
      661 cggtccacag aaagcgggct ctgagccagc ggctccacat cctgcttcgt atgtctacac
      721 cgagcacgcc ttcatctcga accttcggga ggaccagatt gaaaacctca gacggcagct
      781 gggaatcgtg gttcaggggc caggcgtccc caggcccatc attgactttg agcattgtgg
      841 cttccctgag gccttaaacc tcaacctgaa gacctcgggc tacgaggtcc ccacccccat
      901 ccagatgcag atggtccccc tggggcttct gggccgagac gtgctggcca gcgcggacac
      961 cggctctggg aagacggccg ccttcctgct tcccgtcatc atgcgagctc tgtttcaggt
     1021 tatcatagca actcctgggc gacttctgga tataataaag cagggcgctg tagaacttgg
     1081 cggtataaaa attgtagtag tggatgaagc tgataccatg ttaaagatgg gctttcaaca
     1141 gcaagtgctt gacgttttgg aaaatgtgcc tcatgactgt cagacccttt tggcttcagc
     1201 cacgattcca gccagcatag agcagctcgc cagccagctt ctgcgcgacc ccgtgagaat
     1261 catcactggg gagaagaacc tgccctgctc caacgtgcgc cagattgtgt tatgggtgga
     1321 agaaccagcc aaaaagaaga aactgtttga aatcttgaat gataagaaac tctttaagcc
     1381 tccagtgtta gtatttgtgg actgcaaact aggagcagat ctgttgagcg aggccgttca
     1441 gaaaatcaca ggtctgaaaa gcacctctgt gcactcggaa aagccccagc cggaaaggaa
     1501 gaacatactg aagggtttac ttgaaggaga ctatgaagtt gtcgtgagca cgggggtcct
     1561 aggaagaggc ctggacttgg tcagcgtcaa gctggttgtc aatttcgaca tgcctcccag
     1621 catggatgag tacgtgcatc aggttggaag agtggggaga ttaggtcaga atggaacagc
     1681 gattactttc atcaataaca actcgaaaag actcttctgg gatattgcaa aacgagtgaa
     1741 acccacaggg tcccttctcc ccccccagtt gttaaattcc ccttaccttc acgaccagag
     1801 gagaaaggag cagcagaagg ataaacagat gcagaatgat ctggttacgg gggctaatct
     1861 catggacatt attagaaaac atgataaaag taattctcaa aaatgattta tgataccacg
     1921 ttgaataatt ttttttgcat attgtcagtg aaatttctgt acattattcc tggatggttc
     1981 gatgaatgtg acatgcacat gaaacaaaaa gttaacatga tgtaaaaagt tttaatagac
     2041 tatcaaattt atacagcaat attgtattta ttttcctttt taattttcat aaattaaaaa
     2101 caaccaccga aagtgaatta ctaaatggag taaaaatttc ttctctctgg aaaaa
//
LOCUS       XM_032610429            4362 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptic vesicle glycoprotein 2A (SV2A),
            transcript variant X1, mRNA.
ACCESSION   XM_032610429
VERSION     XM_032610429.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4362
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4362
                     /gene="SV2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 21
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116742641"
     CDS             457..2685
                     /gene="SV2A"
                     /codon_start=1
                     /product="synaptic vesicle glycoprotein 2A isoform X1"
                     /protein_id="XP_032466320.1"
                     /db_xref="GeneID:116742641"
                     /translation="MEEGFRDRAAFIRGAKDIAKEVKKHAAKKVVKGLDRVQDEYSRR
                     SYSRFEEEDDDDDFPASADGYYRGEGAQDEEEGGASSDATEGHDEDDEIYEGEYQGIP
                     RAESGGKGERMADGAPLAGVRGGLGDGEGPPGGRGEAQRRKEREELAQQYEAILRECG
                     HGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVG
                     AFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIV
                     FSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGWSFQMGSAYQFHSWR
                     VFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMRAKGHPERVF
                     SVTHIKTIHQEDELIEIQSDTGTWYQRWGVRALSLGGQVWGNFLSCFGPEYRRITLMM
                     MGVWFTMSFSYYGLTVWFPDMIRHLQAVDYAARTKVFPGERVEHVTFNFTLENQIHRG
                     GQYFNDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFRNCTFINTVFYNTDLFEYKF
                     VNSRLVNSTFLHNKEGCPLDVTGTGEGAYMVYFVSFLGTLAVLPGNIVSALLMDKIGR
                     LRMLAGSSVMSCVSCFFLSFGNSESAMIALLCLFGGVSIASWNALDVLTVELYPSDKR
                     TTAFGFLNALCKLAAVLGISIFTSFVGITKAAPILFASAALALGSSLALKLPETRGQV
                     LQ"
     misc_feature    457..2682
                     /gene="SV2A"
                     /note="synaptic vesicle protein SV2; Region: synapt_SV2;
                     TIGR01299"
                     /db_xref="CDD:130366"
ORIGIN      
        1 ctgcgctgcc gcttcccctg gtacccggag cagtcgccgc tgccgccagc cccacggccg
       61 ggacccccgc cctcacccgg actcccttat ccgggggacc cagcccagat ctccagaagc
      121 tcctggaaga gaagtatcag ccttttctga gttatcctgg ctccccagct tagcctccgc
      181 aacctggctc cccctcccct tcctgttccc cctctcccct tctcccttcc caatgcaccc
      241 aactgaagtg ggtgtgggcc aaagctcctc tccctccttt cccctcctaa acacacactg
      301 gccaagccct atattctcct attctgtgcc caaagatact cgaacacact tcctctaagt
      361 aacaggggga cggggtcttt ctgactccac aagtccttga gcaaaatctg aataaggatt
      421 gtaggagatc tggtgaagta ttcccaaagc cccatcatgg aagagggttt cagagaccgg
      481 gcagctttca tccgtggggc caaagacatt gccaaggaag tcaagaagca cgcagccaag
      541 aaggtggtga agggcttgga cagagtccag gatgaatatt cccggagatc ctactcccgc
      601 tttgaggagg aggacgatga tgatgacttc cctgcctctg ctgacggcta ttaccgcggg
      661 gaaggggccc aggatgagga ggaaggtggc gcatctagtg atgccactga gggccatgac
      721 gaggatgatg agatctatga gggggaatat cagggcatcc cccgtgcaga gtctgggggc
      781 aaaggcgagc ggatggcaga tggggcaccc ctggctggag tgaggggggg cttgggtgat
      841 ggggagggcc cccctggggg ccggggagag gcacagcggc ggaaagaacg ggaagaactg
      901 gcccagcagt atgaagccat cctacgggag tgtggccatg gccgcttcca gtggacactg
      961 tatttcgtgc ttggtctggc gctgatggct gatggtgtcg aggtctttgt ggtgggcttc
     1021 gtgctgccca gtgctgagaa agacatgtgc ctgtctgact ccaacaaagg catgctgggc
     1081 ctcattgtct acctgggcat gatggtggga gccttcctct ggggagggct agctgatcgg
     1141 ctgggtcgaa gacaatgtct gctcatatca ctctcagtca acagcgtctt cgcctttttc
     1201 tcatctttcg tccagggtta tggcactttc cttttctgcc gcctcctttc tggcgtcggg
     1261 attggagggt ccatccccat cgtcttctcc tatttttcgg agtttctggc ccaggagaaa
     1321 cgtggggagc atttgagctg gctctgcatg ttttggatga ttggtggagt gtacgcagct
     1381 gctatggctt gggccatcat ccctcactac gggtggagct ttcagatggg gtccgcttac
     1441 cagttccaca gctggagggt ctttgtcctc gtctgcgcct ttccttctgt gtttgccatt
     1501 ggggctctga ccacacagcc tgagagcccc cgtttcttcc tggagaacgg gaaacatgat
     1561 gaggcctgga tggtactgaa gcaggtccat gacaccaaca tgcgagccaa ggggcatcct
     1621 gagcgagtct tctcagtaac ccacattaag acaattcatc aggaggatga gttgattgag
     1681 attcagtcag acacagggac ctggtaccag cgctgggggg tccgggcctt gagcctggga
     1741 gggcaggttt gggggaattt cctctcctgt tttggtccag aatatcgccg catcactctg
     1801 atgatgatgg gtgtgtggtt caccatgtcg ttcagctact atggcctgac tgtctggttt
     1861 cccgacatga tccgccatct ccaggctgtg gactatgcag ctcgcaccaa agtgttccct
     1921 ggggaacgtg tagagcacgt gacttttaac ttcaccttgg agaatcagat ccaccgaggg
     1981 ggacagtact tcaatgacaa gtttattggg ctgcgtctga agtcagtgtc ctttgaggac
     2041 tccctatttg aggagtgtta tttcgaggat gtcacatcca gcaacacttt cttccgcaac
     2101 tgcacgttca tcaacaccgt gttctataac actgacttgt tcgagtacaa gtttgtgaac
     2161 agccgtctgg tgaacagcac attcctgcac aacaaggagg gctgcccact ggacgtgaca
     2221 gggacaggtg aaggtgccta catggtgtat ttcgtcagct tcttggggac gctggctgtg
     2281 cttcctggga acattgtgtc tgccctgctc atggacaaga ttggcaggct ccggatgctt
     2341 gctggctcca gcgtgatgtc ctgtgtctcc tgcttcttcc tgtcttttgg gaacagcgag
     2401 tcagccatga ttgctctgct ctgccttttt gggggggtca gcattgcatc ctggaacgcg
     2461 ctggacgtgt tgactgttga actctacccc tcggacaaaa ggaccacagc cttcggcttc
     2521 ctgaatgctc tgtgtaagct ggcagctgtg ctggggatca gcatcttcac atcctttgtg
     2581 ggaatcacca aggccgcccc catcctcttt gcctcagctg ctcttgccct tggtagttct
     2641 ctggccctga agctgcccga gacgcggggg caggtgctgc agtgagagtc tctggggctt
     2701 cgggggtggc aggcacactg tgagaccaac aattccttct tccccttccc tgccctgcca
     2761 tcctggccac aaagagccct cattccccgc tcccgtttgg tgtcttagcc gtgtgttcgt
     2821 gtgtatgtgt gtgcacgtgc gtgaccccgt gggcagggac tacagggaag gctcctccat
     2881 cccaggtttg gggtgcagcc ctgtccccca cctcctccca cccgtgactt tgcccaagag
     2941 aaggcttggc cccacacttc tccccagtgt tagtgagagg cccttgctct tcccggcgcc
     3001 tgggactcta gaacaggctt cctgccttcc ccctcattcc ctctgcctgg gccctggtga
     3061 aagcacaggc gtgtggctat gccggcggca ggggcctagt gtagaccatg gaccaaaaga
     3121 acttagagtc gtaagcgcgt aaagtgccct ctcacgcctc ttgttggatg ctgggggagt
     3181 agcaataaac ctcagccccc tagcctccat ttccttctca atttgggcta caagtaagaa
     3241 gcctgaattt tatgaaatta gctttctgat tcttatttat ttatatatta agttctgagg
     3301 cagctcagca ggactgtgtg tgtgagtgct tgtgtacatt tatgtgtgtg tgtgtgtgcg
     3361 tgctgtgagg tgggggtgtc gttatgctgt cctcagatac aagccaaggg taacttcagt
     3421 ggacacacac acaaccctgc ctcccccagt acctccccta atcttgtttc tgtgccgggc
     3481 ctgggtggga ggagccctag gccaggctgg gataagaatc ccacagtcta gggagagctg
     3541 agggcacctg acaaggtcca tctcctcccc tcctctcaag aagcacaggc ctcctctgga
     3601 atgagaggct ctacccacta tagcacagac aggcacagca cagaagccct cccacctcca
     3661 acctgtcccc tcacaggcag gggagcggtg gagggaaaga aaccagtcat atggtccaac
     3721 cagcagatca aaagcacaag gagctggggc ggggcaggaa ctggggcctt cccagcaact
     3781 cctgtaaagt gggaagaggt taggcagtaa gccagggact cctaatgcag ggaccagaag
     3841 cctcagtctc cccgtctcac cctttccaca ggacagcccc tgtaggttaa gctgcccctg
     3901 ccccacccta ctctgtgtgg ctgctttctt tggtgccccc tttcccccac cgtagctgtg
     3961 atgtgtcgta gtttttagct gtttgtaaat gttaaaaaaa aagttaaaag gaaaaaagtg
     4021 aaaacaacaa taaaaaaaga aaatccaaat tcaccctcct catgccgcgt ctggtgcccc
     4081 ccaccctatg gtcactccca ttttgtaaca atgaaccagg tggtgactgt ttaactcttt
     4141 gatgtctgtg ctcaaaggac tgccttctcc agtgcccagt gtgcgagtgt gtgccctctt
     4201 ccctcaccct tcacttgctg gaggcagccc tctcccctgc aaccccctgg agggacccat
     4261 ccatctccct tactttcctg gggaacccta aacccaactc tgttgatgta aaaaatgaaa
     4321 atattgatga aaaataaaaa ggaaacaaat ccttaaaatc ta
//
LOCUS       XM_032610437            3026 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptic vesicle glycoprotein 2A (SV2A),
            transcript variant X2, mRNA.
ACCESSION   XM_032610437
VERSION     XM_032610437.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3026
                     /gene="SV2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 1
                     Protein, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments, including 1 sample with support for
                     all annotated introns"
                     /db_xref="GeneID:116742641"
     CDS             126..1352
                     /gene="SV2A"
                     /codon_start=1
                     /product="synaptic vesicle glycoprotein 2A isoform X2"
                     /protein_id="XP_032466328.1"
                     /db_xref="GeneID:116742641"
                     /translation="MVSRSLWWASCCPVLRKTCACLTPTKACWNGKHDEAWMVLKQVH
                     DTNMRAKGHPERVFSVTHIKTIHQEDELIEIQSDTGTWYQRWGVRALSLGGQVWGNFL
                     SCFGPEYRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYAARTKVFPGERVEH
                     VTFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFRNCTFI
                     NTVFYNTDLFEYKFVNSRLVNSTFLHNKEGCPLDVTGTGEGAYMVYFVSFLGTLAVLP
                     GNIVSALLMDKIGRLRMLAGSSVMSCVSCFFLSFGNSESAMIALLCLFGGVSIASWNA
                     LDVLTVELYPSDKRTTAFGFLNALCKLAAVLGISIFTSFVGITKAAPILFASAALALG
                     SSLALKLPETRGQVLQ"
     misc_feature    <213..1349
                     /gene="SV2A"
                     /note="synaptic vesicle protein SV2; Region: synapt_SV2;
                     TIGR01299"
                     /db_xref="CDD:130366"
ORIGIN      
        1 agaggcacag cggcggaaag aacgggaaga actggcccag cagtatgaag ccatcctacg
       61 ggagtgtggc catggccgct tccagtggac actgtatttc gtgcttggtc tggcgctgat
      121 ggctgatggt gtcgaggtct ttgtggtggg cttcgtgctg cccagtgctg agaaagacat
      181 gtgcctgtct gactccaaca aaggcatgct ggaacgggaa acatgatgag gcctggatgg
      241 tactgaagca ggtccatgac accaacatgc gagccaaggg gcatcctgag cgagtcttct
      301 cagtaaccca cattaagaca attcatcagg aggatgagtt gattgagatt cagtcagaca
      361 cagggacctg gtaccagcgc tggggggtcc gggccttgag cctgggaggg caggtttggg
      421 ggaatttcct ctcctgtttt ggtccagaat atcgccgcat cactctgatg atgatgggtg
      481 tgtggttcac catgtcgttc agctactatg gcctgactgt ctggtttccc gacatgatcc
      541 gccatctcca ggctgtggac tatgcagctc gcaccaaagt gttccctggg gaacgtgtag
      601 agcacgtgac ttttaacttc accttggaga atcagatcca ccgaggggga cagtacttca
      661 atgacaagtt tattgggctg cgtctgaagt cagtgtcctt tgaggactcc ctatttgagg
      721 agtgttattt cgaggatgtc acatccagca acactttctt ccgcaactgc acgttcatca
      781 acaccgtgtt ctataacact gacttgttcg agtacaagtt tgtgaacagc cgtctggtga
      841 acagcacatt cctgcacaac aaggagggct gcccactgga cgtgacaggg acaggtgaag
      901 gtgcctacat ggtgtatttc gtcagcttct tggggacgct ggctgtgctt cctgggaaca
      961 ttgtgtctgc cctgctcatg gacaagattg gcaggctccg gatgcttgct ggctccagcg
     1021 tgatgtcctg tgtctcctgc ttcttcctgt cttttgggaa cagcgagtca gccatgattg
     1081 ctctgctctg cctttttggg ggggtcagca ttgcatcctg gaacgcgctg gacgtgttga
     1141 ctgttgaact ctacccctcg gacaaaagga ccacagcctt cggcttcctg aatgctctgt
     1201 gtaagctggc agctgtgctg gggatcagca tcttcacatc ctttgtggga atcaccaagg
     1261 ccgcccccat cctctttgcc tcagctgctc ttgcccttgg tagttctctg gccctgaagc
     1321 tgcccgagac gcgggggcag gtgctgcagt gagagtctct ggggcttcgg gggtggcagg
     1381 cacactgtga gaccaacaat tccttcttcc ccttccctgc cctgccatcc tggccacaaa
     1441 gagccctcat tccccgctcc cgtttggtgt cttagccgtg tgttcgtgtg tatgtgtgtg
     1501 cacgtgcgtg accccgtggg cagggactac agggaaggct cctccatccc aggtttgggg
     1561 tgcagccctg tcccccacct cctcccaccc gtgactttgc ccaagagaag gcttggcccc
     1621 acacttctcc ccagtgttag tgagaggccc ttgctcttcc cggcgcctgg gactctagaa
     1681 caggcttcct gccttccccc tcattccctc tgcctgggcc ctggtgaaag cacaggcgtg
     1741 tggctatgcc ggcggcaggg gcctagtgta gaccatggac caaaagaact tagagtcgta
     1801 agcgcgtaaa gtgccctctc acgcctcttg ttggatgctg ggggagtagc aataaacctc
     1861 agccccctag cctccatttc cttctcaatt tgggctacaa gtaagaagcc tgaattttat
     1921 gaaattagct ttctgattct tatttattta tatattaagt tctgaggcag ctcagcagga
     1981 ctgtgtgtgt gagtgcttgt gtacatttat gtgtgtgtgt gtgtgcgtgc tgtgaggtgg
     2041 gggtgtcgtt atgctgtcct cagatacaag ccaagggtaa cttcagtgga cacacacaca
     2101 accctgcctc ccccagtacc tcccctaatc ttgtttctgt gccgggcctg ggtgggagga
     2161 gccctaggcc aggctgggat aagaatccca cagtctaggg agagctgagg gcacctgaca
     2221 aggtccatct cctcccctcc tctcaagaag cacaggcctc ctctggaatg agaggctcta
     2281 cccactatag cacagacagg cacagcacag aagccctccc acctccaacc tgtcccctca
     2341 caggcagggg agcggtggag ggaaagaaac cagtcatatg gtccaaccag cagatcaaaa
     2401 gcacaaggag ctggggcggg gcaggaactg gggccttccc agcaactcct gtaaagtggg
     2461 aagaggttag gcagtaagcc agggactcct aatgcaggga ccagaagcct cagtctcccc
     2521 gtctcaccct ttccacagga cagcccctgt aggttaagct gcccctgccc caccctactc
     2581 tgtgtggctg ctttctttgg tgcccccttt cccccaccgt agctgtgatg tgtcgtagtt
     2641 tttagctgtt tgtaaatgtt aaaaaaaaag ttaaaaggaa aaaagtgaaa acaacaataa
     2701 aaaaagaaaa tccaaattca ccctcctcat gccgcgtctg gtgcccccca ccctatggtc
     2761 actcccattt tgtaacaatg aaccaggtgg tgactgttta actctttgat gtctgtgctc
     2821 aaaggactgc cttctccagt gcccagtgtg cgagtgtgtg ccctcttccc tcacccttca
     2881 cttgctggag gcagccctct cccctgcaac cccctggagg gacccatcca tctcccttac
     2941 tttcctgggg aaccctaaac ccaactctgt tgatgtaaaa aatgaaaata ttgatgaaaa
     3001 ataaaaagga aacaaatcct taaaat
//
LOCUS       XM_032610446            2950 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptic vesicle glycoprotein 2A (SV2A),
            transcript variant X3, mRNA.
ACCESSION   XM_032610446
VERSION     XM_032610446.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2950
                     /gene="SV2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 1
                     Protein, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments, including 1 sample with support for
                     all annotated introns"
                     /db_xref="GeneID:116742641"
     CDS             161..1276
                     /gene="SV2A"
                     /codon_start=1
                     /product="synaptic vesicle glycoprotein 2A isoform X3"
                     /protein_id="XP_032466337.1"
                     /db_xref="GeneID:116742641"
                     /translation="MVLKQVHDTNMRAKGHPERVFSVTHIKTIHQEDELIEIQSDTGT
                     WYQRWGVRALSLGGQVWGNFLSCFGPEYRRITLMMMGVWFTMSFSYYGLTVWFPDMIR
                     HLQAVDYAARTKVFPGERVEHVTFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLF
                     EECYFEDVTSSNTFFRNCTFINTVFYNTDLFEYKFVNSRLVNSTFLHNKEGCPLDVTG
                     TGEGAYMVYFVSFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVMSCVSCFFLSFGNS
                     ESAMIALLCLFGGVSIASWNALDVLTVELYPSDKRTTAFGFLNALCKLAAVLGISIFT
                     SFVGITKAAPILFASAALALGSSLALKLPETRGQVLQ"
     misc_feature    <161..1273
                     /gene="SV2A"
                     /note="synaptic vesicle protein SV2; Region: synapt_SV2;
                     TIGR01299"
                     /db_xref="CDD:130366"
ORIGIN      
        1 cccatcgtct tctcctattt ttcggagttt ctggcccagg agaaacgtgg ggagcatttg
       61 agctggctct gcatgttttg gatgattggt ggagtgtacg cagctgctat ggcttgggcc
      121 atcatccctc actacgaacg ggaaacatga tgaggcctgg atggtactga agcaggtcca
      181 tgacaccaac atgcgagcca aggggcatcc tgagcgagtc ttctcagtaa cccacattaa
      241 gacaattcat caggaggatg agttgattga gattcagtca gacacaggga cctggtacca
      301 gcgctggggg gtccgggcct tgagcctggg agggcaggtt tgggggaatt tcctctcctg
      361 ttttggtcca gaatatcgcc gcatcactct gatgatgatg ggtgtgtggt tcaccatgtc
      421 gttcagctac tatggcctga ctgtctggtt tcccgacatg atccgccatc tccaggctgt
      481 ggactatgca gctcgcacca aagtgttccc tggggaacgt gtagagcacg tgacttttaa
      541 cttcaccttg gagaatcaga tccaccgagg gggacagtac ttcaatgaca agtttattgg
      601 gctgcgtctg aagtcagtgt cctttgagga ctccctattt gaggagtgtt atttcgagga
      661 tgtcacatcc agcaacactt tcttccgcaa ctgcacgttc atcaacaccg tgttctataa
      721 cactgacttg ttcgagtaca agtttgtgaa cagccgtctg gtgaacagca cattcctgca
      781 caacaaggag ggctgcccac tggacgtgac agggacaggt gaaggtgcct acatggtgta
      841 tttcgtcagc ttcttgggga cgctggctgt gcttcctggg aacattgtgt ctgccctgct
      901 catggacaag attggcaggc tccggatgct tgctggctcc agcgtgatgt cctgtgtctc
      961 ctgcttcttc ctgtcttttg ggaacagcga gtcagccatg attgctctgc tctgcctttt
     1021 tgggggggtc agcattgcat cctggaacgc gctggacgtg ttgactgttg aactctaccc
     1081 ctcggacaaa aggaccacag ccttcggctt cctgaatgct ctgtgtaagc tggcagctgt
     1141 gctggggatc agcatcttca catcctttgt gggaatcacc aaggccgccc ccatcctctt
     1201 tgcctcagct gctcttgccc ttggtagttc tctggccctg aagctgcccg agacgcgggg
     1261 gcaggtgctg cagtgagagt ctctggggct tcgggggtgg caggcacact gtgagaccaa
     1321 caattccttc ttccccttcc ctgccctgcc atcctggcca caaagagccc tcattccccg
     1381 ctcccgtttg gtgtcttagc cgtgtgttcg tgtgtatgtg tgtgcacgtg cgtgaccccg
     1441 tgggcaggga ctacagggaa ggctcctcca tcccaggttt ggggtgcagc cctgtccccc
     1501 acctcctccc acccgtgact ttgcccaaga gaaggcttgg ccccacactt ctccccagtg
     1561 ttagtgagag gcccttgctc ttcccggcgc ctgggactct agaacaggct tcctgccttc
     1621 cccctcattc cctctgcctg ggccctggtg aaagcacagg cgtgtggcta tgccggcggc
     1681 aggggcctag tgtagaccat ggaccaaaag aacttagagt cgtaagcgcg taaagtgccc
     1741 tctcacgcct cttgttggat gctgggggag tagcaataaa cctcagcccc ctagcctcca
     1801 tttccttctc aatttgggct acaagtaaga agcctgaatt ttatgaaatt agctttctga
     1861 ttcttattta tttatatatt aagttctgag gcagctcagc aggactgtgt gtgtgagtgc
     1921 ttgtgtacat ttatgtgtgt gtgtgtgtgc gtgctgtgag gtgggggtgt cgttatgctg
     1981 tcctcagata caagccaagg gtaacttcag tggacacaca cacaaccctg cctcccccag
     2041 tacctcccct aatcttgttt ctgtgccggg cctgggtggg aggagcccta ggccaggctg
     2101 ggataagaat cccacagtct agggagagct gagggcacct gacaaggtcc atctcctccc
     2161 ctcctctcaa gaagcacagg cctcctctgg aatgagaggc tctacccact atagcacaga
     2221 caggcacagc acagaagccc tcccacctcc aacctgtccc ctcacaggca ggggagcggt
     2281 ggagggaaag aaaccagtca tatggtccaa ccagcagatc aaaagcacaa ggagctgggg
     2341 cggggcagga actggggcct tcccagcaac tcctgtaaag tgggaagagg ttaggcagta
     2401 agccagggac tcctaatgca gggaccagaa gcctcagtct ccccgtctca ccctttccac
     2461 aggacagccc ctgtaggtta agctgcccct gccccaccct actctgtgtg gctgctttct
     2521 ttggtgcccc ctttccccca ccgtagctgt gatgtgtcgt agtttttagc tgtttgtaaa
     2581 tgttaaaaaa aaagttaaaa ggaaaaaagt gaaaacaaca ataaaaaaag aaaatccaaa
     2641 ttcaccctcc tcatgccgcg tctggtgccc cccaccctat ggtcactccc attttgtaac
     2701 aatgaaccag gtggtgactg tttaactctt tgatgtctgt gctcaaagga ctgccttctc
     2761 cagtgcccag tgtgcgagtg tgtgccctct tccctcaccc ttcacttgct ggaggcagcc
     2821 ctctcccctg caaccccctg gagggaccca tccatctccc ttactttcct ggggaaccct
     2881 aaacccaact ctgttgatgt aaaaaatgaa aatattgatg aaaaataaaa aggaaacaaa
     2941 tccttaaaat
//
LOCUS       XM_032610456            3369 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit D (LRRC8D), transcript variant X1, mRNA.
ACCESSION   XM_032610456
VERSION     XM_032610456.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3369
                     /gene="LRRC8D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742655"
     CDS             442..3009
                     /gene="LRRC8D"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8D"
                     /protein_id="XP_032466347.1"
                     /db_xref="GeneID:116742655"
                     /translation="MFTLAEVASLNDIQPTYRILKPWWDVFMDYLAVVMLMVAIFAGT
                     MQLTKDQVVCLPVLPSPVNSKAHTPPGSADVTTNIPKVESATDQDQDGRMTNEISFGA
                     SAVTPDIPLRATYPHTDSTVPNQEAKKDPAGRKTNLDFQQYVFINQMCYHLALPWYSK
                     YFPYLALIHTIILMVSSNFWFKYPKTCSKVEHFVSILGKCFESPWTTKALSETACEDS
                     EENKQRITGAQTLPKHVSTSSDEGSPSASTPMISKTGFKFSAEKPVIEVPSMTILDKK
                     DGEQAKALFEKVRKFRAHVEDSDLIYKLYVVQTVIKTAKFIFILCYTANFVNAISFEH
                     VCKPKVEHLTGYEVFECTHNMAYMLKKLLISYISIICVYGFICLYTLFWLFRIPLKEY
                     SFEKVREESSFSDIPDVKNDFAFLLHMVDQYDQLYSKRFGVFLSEVSENKLREISLNH
                     EWTFEKLRQHVSRNAQDKQELHLFMLSGVPDAVFDLTDLDVLKLELIPEAKIPAKISQ
                     MTNLQELHLCHCPAKVEQTAFSFLRDHLRCLHVKFTDVAEIPAWVYLLKNLRELYLIG
                     NLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSNITDVAPHLTRLVVHNDGTKLLV
                     LNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHLKRL
                     TCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPVAVFSLQKLRCLDVSYNNISM
                     IPIEIGLLQNLQHLHITGNKVDVLPKQLFKCIKLRTLNLGQNCITSLPEKIGQLSQLT
                     QLELKGNCLDRLPAQLGQCRLLKKSGLVVEDHLFDTLPLEVKEALNQDINIPFANGI"
     misc_feature    442..1584
                     /gene="LRRC8D"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1975..2040
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    2068..>2871
                     /gene="LRRC8D"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    2116..2199
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2200..2277
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2341..2409
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2410..2484
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2485..2553
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2554..2622
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2623..2691
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2692..2760
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2761..2829
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2830..2892
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 cggagctgca gcgcctgcac gggcccggag tccatgttac gctttgttta attccccccg
       61 ctacagagtc atgtgctgct gctctcgtcg ccgccgctgc cgccgcccgt ggtgccccgg
      121 ctcctccgcc gcgcttcgaa gtggcagccg cgggcggggc cgcgaaagca gggtcctggg
      181 cgccgcgcgc ctccgccgcc ccggcacgtc cgggagcagc caccgcacgc cgcaggtgat
      241 gccgccacct cccgcctccg cctaagccgg gctaggcggc caagctgccc cccaaggaag
      301 tgcagggctg tctgtaacgt gccgccgggt cccaggatgg aagagtgaag tcgcgccggt
      361 tccagctcgc ggagcccgcc ggaagccagt ccccggagag gagagcgccc tgagggagca
      421 gggtggccgc ctggtccagg aatgtttacc cttgcggaag ttgcttcact taatgacatt
      481 caaccaactt accgaatcct gaaaccatgg tgggacgtgt ttatggatta cctggctgtc
      541 gttatgttga tggtagccat ctttgcagga accatgcaac ttaccaaaga tcaggtggtc
      601 tgcttgccag tattgccatc tcctgtaaat tcaaaggcac acacaccacc aggaagtgcc
      661 gacgttacca ccaacatccc gaaggtggag tcagccacag accaagacca agatgggcgg
      721 atgacaaatg agatttcctt tggcgcatct gctgtgacac ctgacatacc tctcagagcc
      781 acatatcctc acacagattc cacggttcca aatcaggagg caaagaaaga cccagcaggc
      841 cgaaaaacaa acttggattt tcagcaatat gtatttatta atcagatgtg ttaccacctg
      901 gcccttccgt ggtattctaa gtactttccg taccttgctc ttatacatac tattattctc
      961 atggtcagta gcaacttttg gttcaaatat cccaaaacat gctcaaaagt agaacatttc
     1021 gtttcaatat taggaaagtg ctttgaatct ccttggacta ctaaagcgtt gtctgagaca
     1081 gcatgcgaag actcggagga aaacaagcag agaataacag gtgcccagac tctaccaaag
     1141 cacgtatcta ccagcagtga tgaagggagc cccagcgcca gcaccccaat gatcagcaaa
     1201 actggcttca aattttcagc tgaaaagccc gtgattgaag tccccagcat gaccatcctg
     1261 gacaaaaagg acggggaaca ggccaaagcc ctgtttgaga aagtgaggaa gttccgtgct
     1321 cacgtggaag acagtgactt gatctataaa ctctacgtgg tccaaacagt tatcaaaaca
     1381 gccaagttca tctttatcct ctgctacact gcaaacttcg tcaatgcgat cagctttgaa
     1441 cacgtctgca agcccaaagt tgagcacctg acgggttacg aggtgtttga gtgcacccac
     1501 aacatggcat acatgctgaa aaaactgctc atcagttaca tatccattat ttgcgtttat
     1561 ggttttatct gcctctacac tctcttctgg ttattcagga tacctttgaa ggaatattct
     1621 tttgaaaaag tcagagaaga gagcagtttc agtgacattc cagatgtcaa aaatgatttt
     1681 gcgttccttc tacacatggt agaccagtat gaccagctgt attccaagcg tttcggggtg
     1741 ttcttgtcgg aagtcagtga aaataaactg agggaaatca gtttgaacca cgagtggaca
     1801 tttgaaaaac tgaggcagca cgtgtcacgc aacgcccagg acaagcagga gctccatctg
     1861 tttatgctct caggtgtgcc cgatgctgtc ttcgacctca cagacctgga tgtgctaaaa
     1921 ctcgagctga tcccagaagc taaaattcct gctaagattt ctcagatgac taacctccaa
     1981 gagcttcacc tctgccactg ccctgcaaaa gtggaacaga ctgcttttag cttcctccgt
     2041 gatcacttga gatgccttca cgtgaagttc accgacgtgg cagaaattcc cgcctgggtg
     2101 tatctgctca aaaaccttcg cgagctgtac ttgataggca acttgaactc tgaaaacaat
     2161 aagatgatag gacttgaatc cctccgagag ttgcggcacc ttaagattct ccacgtgaag
     2221 agcaatctga ccaaagtccc ctccaacatt acagatgtgg ctccgcatct cacaaggtta
     2281 gtcgttcata atgacggcac taaactcctg gtactgaaca gccttaagaa gatgatgaat
     2341 gtcgccgagc tcgagctcca gaactgtgag ctagagagaa ttccacatgc tattttcagc
     2401 ctctctaact tgcaggaact agatttaaag tcaaataaca tacgcacaat tgaagaaatc
     2461 atcagtttcc agcatttaaa gcgactgact tgtttaaaac tgtggcataa taaaatcgtt
     2521 accattccac cctccatcac ccacgtcaaa aacttggagt cactttattt ctctaacaac
     2581 aagctcgaat ccctacctgt ggcagtgttt agtttacaga aactcagatg cttagatgta
     2641 agctacaaca acatttccat gatcccaata gaaataggat tacttcagaa cctgcagcat
     2701 ttgcatatca cggggaacaa agtggacgtt ctgccaaaac agttgtttaa atgcattaag
     2761 ttgaggactt tgaatctggg gcagaactgc atcacttccc tcccagagaa gatcggtcag
     2821 ctctcccagc tcacccagct ggagctgaaa gggaactgct tggaccgcct gccagcccag
     2881 ctgggccagt gtcgcctgct caagaagagc gggcttgttg tggaagatca cctttttgac
     2941 accctgccac tcgaagtcaa agaagcattg aatcaagaca taaatattcc ctttgcaaat
     3001 gggatttaaa ctgagatcag atgtgcacat ccgtgtgcag gaacaacttc ctagatggca
     3061 agtgctcatg taccagttat tgcaagataa tgcattttag gagtagatac acctttaaaa
     3121 atacaacaga gaggatgcat agaaggctga tagaagacat aactgaatgt tcaacgttta
     3181 tagtgtgtta agtcattcac ttccaaatct ttttcttttt tcttttgggg aaagggaagg
     3241 aaaaattata atcactaatc ttggtttctt tttaaattgt ttgtaacttg gatgctgccg
     3301 ctactgaatg tttacaaatt gcttgcctgc taaagtaaat gattaaattg acattttctt
     3361 actatacca
//
LOCUS       XM_032610466            3225 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit D (LRRC8D), transcript variant X2, mRNA.
ACCESSION   XM_032610466
VERSION     XM_032610466.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3225
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3225
                     /gene="LRRC8D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742655"
     CDS             298..2865
                     /gene="LRRC8D"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8D"
                     /protein_id="XP_032466357.1"
                     /db_xref="GeneID:116742655"
                     /translation="MFTLAEVASLNDIQPTYRILKPWWDVFMDYLAVVMLMVAIFAGT
                     MQLTKDQVVCLPVLPSPVNSKAHTPPGSADVTTNIPKVESATDQDQDGRMTNEISFGA
                     SAVTPDIPLRATYPHTDSTVPNQEAKKDPAGRKTNLDFQQYVFINQMCYHLALPWYSK
                     YFPYLALIHTIILMVSSNFWFKYPKTCSKVEHFVSILGKCFESPWTTKALSETACEDS
                     EENKQRITGAQTLPKHVSTSSDEGSPSASTPMISKTGFKFSAEKPVIEVPSMTILDKK
                     DGEQAKALFEKVRKFRAHVEDSDLIYKLYVVQTVIKTAKFIFILCYTANFVNAISFEH
                     VCKPKVEHLTGYEVFECTHNMAYMLKKLLISYISIICVYGFICLYTLFWLFRIPLKEY
                     SFEKVREESSFSDIPDVKNDFAFLLHMVDQYDQLYSKRFGVFLSEVSENKLREISLNH
                     EWTFEKLRQHVSRNAQDKQELHLFMLSGVPDAVFDLTDLDVLKLELIPEAKIPAKISQ
                     MTNLQELHLCHCPAKVEQTAFSFLRDHLRCLHVKFTDVAEIPAWVYLLKNLRELYLIG
                     NLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSNITDVAPHLTRLVVHNDGTKLLV
                     LNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHLKRL
                     TCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPVAVFSLQKLRCLDVSYNNISM
                     IPIEIGLLQNLQHLHITGNKVDVLPKQLFKCIKLRTLNLGQNCITSLPEKIGQLSQLT
                     QLELKGNCLDRLPAQLGQCRLLKKSGLVVEDHLFDTLPLEVKEALNQDINIPFANGI"
     misc_feature    298..1440
                     /gene="LRRC8D"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1831..1896
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1924..>2727
                     /gene="LRRC8D"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1972..2055
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2056..2133
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2197..2265
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2266..2340
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2341..2409
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2410..2478
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2479..2547
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2548..2616
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2617..2685
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2686..2748
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 ggagctgcag cgcctgcacg ggcccggagt ccatgttacg ctttgtttaa ttccccccgc
       61 tacagagtca tgtgctgctg ctctcgtcgc cgccgctgcc gccgcccgtg gtgccccggc
      121 tcctccgccg cgcttcgaag tggcagccgc gggcggggcc gcgaaagcag ggtcctgggc
      181 gccgcgcgcc tccgccgccc cggcacgtcc gggagcagcc accgcacgcc gcaggtgatg
      241 ccgccacctc ccgcctccgc ctaagccggg ctaggcggcc aagctgcccc ccaaggaatg
      301 tttacccttg cggaagttgc ttcacttaat gacattcaac caacttaccg aatcctgaaa
      361 ccatggtggg acgtgtttat ggattacctg gctgtcgtta tgttgatggt agccatcttt
      421 gcaggaacca tgcaacttac caaagatcag gtggtctgct tgccagtatt gccatctcct
      481 gtaaattcaa aggcacacac accaccagga agtgccgacg ttaccaccaa catcccgaag
      541 gtggagtcag ccacagacca agaccaagat gggcggatga caaatgagat ttcctttggc
      601 gcatctgctg tgacacctga catacctctc agagccacat atcctcacac agattccacg
      661 gttccaaatc aggaggcaaa gaaagaccca gcaggccgaa aaacaaactt ggattttcag
      721 caatatgtat ttattaatca gatgtgttac cacctggccc ttccgtggta ttctaagtac
      781 tttccgtacc ttgctcttat acatactatt attctcatgg tcagtagcaa cttttggttc
      841 aaatatccca aaacatgctc aaaagtagaa catttcgttt caatattagg aaagtgcttt
      901 gaatctcctt ggactactaa agcgttgtct gagacagcat gcgaagactc ggaggaaaac
      961 aagcagagaa taacaggtgc ccagactcta ccaaagcacg tatctaccag cagtgatgaa
     1021 gggagcccca gcgccagcac cccaatgatc agcaaaactg gcttcaaatt ttcagctgaa
     1081 aagcccgtga ttgaagtccc cagcatgacc atcctggaca aaaaggacgg ggaacaggcc
     1141 aaagccctgt ttgagaaagt gaggaagttc cgtgctcacg tggaagacag tgacttgatc
     1201 tataaactct acgtggtcca aacagttatc aaaacagcca agttcatctt tatcctctgc
     1261 tacactgcaa acttcgtcaa tgcgatcagc tttgaacacg tctgcaagcc caaagttgag
     1321 cacctgacgg gttacgaggt gtttgagtgc acccacaaca tggcatacat gctgaaaaaa
     1381 ctgctcatca gttacatatc cattatttgc gtttatggtt ttatctgcct ctacactctc
     1441 ttctggttat tcaggatacc tttgaaggaa tattcttttg aaaaagtcag agaagagagc
     1501 agtttcagtg acattccaga tgtcaaaaat gattttgcgt tccttctaca catggtagac
     1561 cagtatgacc agctgtattc caagcgtttc ggggtgttct tgtcggaagt cagtgaaaat
     1621 aaactgaggg aaatcagttt gaaccacgag tggacatttg aaaaactgag gcagcacgtg
     1681 tcacgcaacg cccaggacaa gcaggagctc catctgttta tgctctcagg tgtgcccgat
     1741 gctgtcttcg acctcacaga cctggatgtg ctaaaactcg agctgatccc agaagctaaa
     1801 attcctgcta agatttctca gatgactaac ctccaagagc ttcacctctg ccactgccct
     1861 gcaaaagtgg aacagactgc ttttagcttc ctccgtgatc acttgagatg ccttcacgtg
     1921 aagttcaccg acgtggcaga aattcccgcc tgggtgtatc tgctcaaaaa ccttcgcgag
     1981 ctgtacttga taggcaactt gaactctgaa aacaataaga tgataggact tgaatccctc
     2041 cgagagttgc ggcaccttaa gattctccac gtgaagagca atctgaccaa agtcccctcc
     2101 aacattacag atgtggctcc gcatctcaca aggttagtcg ttcataatga cggcactaaa
     2161 ctcctggtac tgaacagcct taagaagatg atgaatgtcg ccgagctcga gctccagaac
     2221 tgtgagctag agagaattcc acatgctatt ttcagcctct ctaacttgca ggaactagat
     2281 ttaaagtcaa ataacatacg cacaattgaa gaaatcatca gtttccagca tttaaagcga
     2341 ctgacttgtt taaaactgtg gcataataaa atcgttacca ttccaccctc catcacccac
     2401 gtcaaaaact tggagtcact ttatttctct aacaacaagc tcgaatccct acctgtggca
     2461 gtgtttagtt tacagaaact cagatgctta gatgtaagct acaacaacat ttccatgatc
     2521 ccaatagaaa taggattact tcagaacctg cagcatttgc atatcacggg gaacaaagtg
     2581 gacgttctgc caaaacagtt gtttaaatgc attaagttga ggactttgaa tctggggcag
     2641 aactgcatca cttccctccc agagaagatc ggtcagctct cccagctcac ccagctggag
     2701 ctgaaaggga actgcttgga ccgcctgcca gcccagctgg gccagtgtcg cctgctcaag
     2761 aagagcgggc ttgttgtgga agatcacctt tttgacaccc tgccactcga agtcaaagaa
     2821 gcattgaatc aagacataaa tattcccttt gcaaatggga tttaaactga gatcagatgt
     2881 gcacatccgt gtgcaggaac aacttcctag atggcaagtg ctcatgtacc agttattgca
     2941 agataatgca ttttaggagt agatacacct ttaaaaatac aacagagagg atgcatagaa
     3001 ggctgataga agacataact gaatgttcaa cgtttatagt gtgttaagtc attcacttcc
     3061 aaatcttttt cttttttctt ttggggaaag ggaaggaaaa attataatca ctaatcttgg
     3121 tttcttttta aattgtttgt aacttggatg ctgccgctac tgaatgttta caaattgctt
     3181 gcctgctaaa gtaaatgatt aaattgacat tttcttacta tacca
//
LOCUS       XM_032610475            3663 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit D (LRRC8D), transcript variant X3, mRNA.
ACCESSION   XM_032610475
VERSION     XM_032610475.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3663
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3663
                     /gene="LRRC8D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742655"
     CDS             415..2982
                     /gene="LRRC8D"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8D"
                     /protein_id="XP_032466366.1"
                     /db_xref="GeneID:116742655"
                     /translation="MFTLAEVASLNDIQPTYRILKPWWDVFMDYLAVVMLMVAIFAGT
                     MQLTKDQVVCLPVLPSPVNSKAHTPPGSADVTTNIPKVESATDQDQDGRMTNEISFGA
                     SAVTPDIPLRATYPHTDSTVPNQEAKKDPAGRKTNLDFQQYVFINQMCYHLALPWYSK
                     YFPYLALIHTIILMVSSNFWFKYPKTCSKVEHFVSILGKCFESPWTTKALSETACEDS
                     EENKQRITGAQTLPKHVSTSSDEGSPSASTPMISKTGFKFSAEKPVIEVPSMTILDKK
                     DGEQAKALFEKVRKFRAHVEDSDLIYKLYVVQTVIKTAKFIFILCYTANFVNAISFEH
                     VCKPKVEHLTGYEVFECTHNMAYMLKKLLISYISIICVYGFICLYTLFWLFRIPLKEY
                     SFEKVREESSFSDIPDVKNDFAFLLHMVDQYDQLYSKRFGVFLSEVSENKLREISLNH
                     EWTFEKLRQHVSRNAQDKQELHLFMLSGVPDAVFDLTDLDVLKLELIPEAKIPAKISQ
                     MTNLQELHLCHCPAKVEQTAFSFLRDHLRCLHVKFTDVAEIPAWVYLLKNLRELYLIG
                     NLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSNITDVAPHLTRLVVHNDGTKLLV
                     LNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHLKRL
                     TCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPVAVFSLQKLRCLDVSYNNISM
                     IPIEIGLLQNLQHLHITGNKVDVLPKQLFKCIKLRTLNLGQNCITSLPEKIGQLSQLT
                     QLELKGNCLDRLPAQLGQCRLLKKSGLVVEDHLFDTLPLEVKEALNQDINIPFANGI"
     misc_feature    415..1557
                     /gene="LRRC8D"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1948..2013
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    2041..>2844
                     /gene="LRRC8D"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    2089..2172
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2173..2250
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2314..2382
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2383..2457
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2458..2526
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2527..2595
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2596..2664
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2665..2733
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2734..2802
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2803..2865
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 ataatccgct tctagcttgt ttggaagcgt gggcacttgg gagccggact tctgctcaaa
       61 tcccgttcag tggcttggaa aggaggaggc ttggggagtg gttgctcagg aaatcatcac
      121 ctccgcttac tggagggttg ataggggcct tcctctttct ctcccccttc atttggggta
      181 tcccttatgg ataaagagat gagttttttt ggtttcttac aaagccagcc acggtaaaga
      241 agagctgccg caggtcgagg ggaggagagg aagtgcaggg ctgtctgtaa cgtgccgccg
      301 ggtcccagga tggaagagtg aagtcgcgcc ggttccagct cgcggagccc gccggaagcc
      361 agtccccgga gaggagagcg ccctgaggga gcagggtggc cgcctggtcc aggaatgttt
      421 acccttgcgg aagttgcttc acttaatgac attcaaccaa cttaccgaat cctgaaacca
      481 tggtgggacg tgtttatgga ttacctggct gtcgttatgt tgatggtagc catctttgca
      541 ggaaccatgc aacttaccaa agatcaggtg gtctgcttgc cagtattgcc atctcctgta
      601 aattcaaagg cacacacacc accaggaagt gccgacgtta ccaccaacat cccgaaggtg
      661 gagtcagcca cagaccaaga ccaagatggg cggatgacaa atgagatttc ctttggcgca
      721 tctgctgtga cacctgacat acctctcaga gccacatatc ctcacacaga ttccacggtt
      781 ccaaatcagg aggcaaagaa agacccagca ggccgaaaaa caaacttgga ttttcagcaa
      841 tatgtattta ttaatcagat gtgttaccac ctggcccttc cgtggtattc taagtacttt
      901 ccgtaccttg ctcttataca tactattatt ctcatggtca gtagcaactt ttggttcaaa
      961 tatcccaaaa catgctcaaa agtagaacat ttcgtttcaa tattaggaaa gtgctttgaa
     1021 tctccttgga ctactaaagc gttgtctgag acagcatgcg aagactcgga ggaaaacaag
     1081 cagagaataa caggtgccca gactctacca aagcacgtat ctaccagcag tgatgaaggg
     1141 agccccagcg ccagcacccc aatgatcagc aaaactggct tcaaattttc agctgaaaag
     1201 cccgtgattg aagtccccag catgaccatc ctggacaaaa aggacgggga acaggccaaa
     1261 gccctgtttg agaaagtgag gaagttccgt gctcacgtgg aagacagtga cttgatctat
     1321 aaactctacg tggtccaaac agttatcaaa acagccaagt tcatctttat cctctgctac
     1381 actgcaaact tcgtcaatgc gatcagcttt gaacacgtct gcaagcccaa agttgagcac
     1441 ctgacgggtt acgaggtgtt tgagtgcacc cacaacatgg catacatgct gaaaaaactg
     1501 ctcatcagtt acatatccat tatttgcgtt tatggtttta tctgcctcta cactctcttc
     1561 tggttattca ggataccttt gaaggaatat tcttttgaaa aagtcagaga agagagcagt
     1621 ttcagtgaca ttccagatgt caaaaatgat tttgcgttcc ttctacacat ggtagaccag
     1681 tatgaccagc tgtattccaa gcgtttcggg gtgttcttgt cggaagtcag tgaaaataaa
     1741 ctgagggaaa tcagtttgaa ccacgagtgg acatttgaaa aactgaggca gcacgtgtca
     1801 cgcaacgccc aggacaagca ggagctccat ctgtttatgc tctcaggtgt gcccgatgct
     1861 gtcttcgacc tcacagacct ggatgtgcta aaactcgagc tgatcccaga agctaaaatt
     1921 cctgctaaga tttctcagat gactaacctc caagagcttc acctctgcca ctgccctgca
     1981 aaagtggaac agactgcttt tagcttcctc cgtgatcact tgagatgcct tcacgtgaag
     2041 ttcaccgacg tggcagaaat tcccgcctgg gtgtatctgc tcaaaaacct tcgcgagctg
     2101 tacttgatag gcaacttgaa ctctgaaaac aataagatga taggacttga atccctccga
     2161 gagttgcggc accttaagat tctccacgtg aagagcaatc tgaccaaagt cccctccaac
     2221 attacagatg tggctccgca tctcacaagg ttagtcgttc ataatgacgg cactaaactc
     2281 ctggtactga acagccttaa gaagatgatg aatgtcgccg agctcgagct ccagaactgt
     2341 gagctagaga gaattccaca tgctattttc agcctctcta acttgcagga actagattta
     2401 aagtcaaata acatacgcac aattgaagaa atcatcagtt tccagcattt aaagcgactg
     2461 acttgtttaa aactgtggca taataaaatc gttaccattc caccctccat cacccacgtc
     2521 aaaaacttgg agtcacttta tttctctaac aacaagctcg aatccctacc tgtggcagtg
     2581 tttagtttac agaaactcag atgcttagat gtaagctaca acaacatttc catgatccca
     2641 atagaaatag gattacttca gaacctgcag catttgcata tcacggggaa caaagtggac
     2701 gttctgccaa aacagttgtt taaatgcatt aagttgagga ctttgaatct ggggcagaac
     2761 tgcatcactt ccctcccaga gaagatcggt cagctctccc agctcaccca gctggagctg
     2821 aaagggaact gcttggaccg cctgccagcc cagctgggcc agtgtcgcct gctcaagaag
     2881 agcgggcttg ttgtggaaga tcaccttttt gacaccctgc cactcgaagt caaagaagca
     2941 ttgaatcaag acataaatat tccctttgca aatgggattt aaactgagat cagatgtgca
     3001 catccgtgtg caggaacaac ttcctagatg gcaagtgctc atgtaccagt tattgcaaga
     3061 taatgcattt taggagtaga tacaccttta aaaatacaac agagaggatg catagaaggc
     3121 tgatagaaga cataactgaa tgttcaacgt ttatagtgtg ttaagtcatt cacttccaaa
     3181 tctttttctt ttttcttttg gggaaaggga aggaaaaatt ataatcacta atcttggttt
     3241 ctttttaaat tgtttgtaac ttggatgctg ccgctactga atgtttacaa attgcttgcc
     3301 tgctaaagta aatgattaaa ttgacatttt cttactatac cacctttttt tgaggtgtct
     3361 tgatttactt tgctgaattg gtgcaatagt cctttagctc agacctctga aggcgtatca
     3421 ggtccgatct tgtaaattca gattcgctga aatactgatt tcttttttgt tttaatttca
     3481 agcacctcaa ataagcactt cttataatat ttaactggtg ctaccgcttc tgagaatccc
     3541 attttataga ttttacactc tgaaaggcct ggaatgcagt aaaagtgtgt agggcgtcga
     3601 gggagttttg tttgtttgtt tgtttgtttg ttttctaaga ataaataaca agaaaaaata
     3661 aaa
//
LOCUS       XM_032610485            3510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit D (LRRC8D), transcript variant X4, mRNA.
ACCESSION   XM_032610485
VERSION     XM_032610485.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3510
                     /gene="LRRC8D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742655"
     CDS             262..2829
                     /gene="LRRC8D"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8D"
                     /protein_id="XP_032466376.1"
                     /db_xref="GeneID:116742655"
                     /translation="MFTLAEVASLNDIQPTYRILKPWWDVFMDYLAVVMLMVAIFAGT
                     MQLTKDQVVCLPVLPSPVNSKAHTPPGSADVTTNIPKVESATDQDQDGRMTNEISFGA
                     SAVTPDIPLRATYPHTDSTVPNQEAKKDPAGRKTNLDFQQYVFINQMCYHLALPWYSK
                     YFPYLALIHTIILMVSSNFWFKYPKTCSKVEHFVSILGKCFESPWTTKALSETACEDS
                     EENKQRITGAQTLPKHVSTSSDEGSPSASTPMISKTGFKFSAEKPVIEVPSMTILDKK
                     DGEQAKALFEKVRKFRAHVEDSDLIYKLYVVQTVIKTAKFIFILCYTANFVNAISFEH
                     VCKPKVEHLTGYEVFECTHNMAYMLKKLLISYISIICVYGFICLYTLFWLFRIPLKEY
                     SFEKVREESSFSDIPDVKNDFAFLLHMVDQYDQLYSKRFGVFLSEVSENKLREISLNH
                     EWTFEKLRQHVSRNAQDKQELHLFMLSGVPDAVFDLTDLDVLKLELIPEAKIPAKISQ
                     MTNLQELHLCHCPAKVEQTAFSFLRDHLRCLHVKFTDVAEIPAWVYLLKNLRELYLIG
                     NLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSNITDVAPHLTRLVVHNDGTKLLV
                     LNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHLKRL
                     TCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPVAVFSLQKLRCLDVSYNNISM
                     IPIEIGLLQNLQHLHITGNKVDVLPKQLFKCIKLRTLNLGQNCITSLPEKIGQLSQLT
                     QLELKGNCLDRLPAQLGQCRLLKKSGLVVEDHLFDTLPLEVKEALNQDINIPFANGI"
     misc_feature    262..1404
                     /gene="LRRC8D"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1795..1860
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1888..>2691
                     /gene="LRRC8D"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1936..2019
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2020..2097
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2161..2229
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2230..2304
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2305..2373
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2374..2442
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2443..2511
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2512..2580
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2581..2649
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2650..2712
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 cttctctcgc ctccctccgc cccatcggaa gggcggggag acccggttac ggctccactg
       61 attcttcccg gaggtgggtg tttggtgtct ggcctcgctg gcccactgcc cagaaggaag
      121 tgcagggctg tctgtaacgt gccgccgggt cccaggatgg aagagtgaag tcgcgccggt
      181 tccagctcgc ggagcccgcc ggaagccagt ccccggagag gagagcgccc tgagggagca
      241 gggtggccgc ctggtccagg aatgtttacc cttgcggaag ttgcttcact taatgacatt
      301 caaccaactt accgaatcct gaaaccatgg tgggacgtgt ttatggatta cctggctgtc
      361 gttatgttga tggtagccat ctttgcagga accatgcaac ttaccaaaga tcaggtggtc
      421 tgcttgccag tattgccatc tcctgtaaat tcaaaggcac acacaccacc aggaagtgcc
      481 gacgttacca ccaacatccc gaaggtggag tcagccacag accaagacca agatgggcgg
      541 atgacaaatg agatttcctt tggcgcatct gctgtgacac ctgacatacc tctcagagcc
      601 acatatcctc acacagattc cacggttcca aatcaggagg caaagaaaga cccagcaggc
      661 cgaaaaacaa acttggattt tcagcaatat gtatttatta atcagatgtg ttaccacctg
      721 gcccttccgt ggtattctaa gtactttccg taccttgctc ttatacatac tattattctc
      781 atggtcagta gcaacttttg gttcaaatat cccaaaacat gctcaaaagt agaacatttc
      841 gtttcaatat taggaaagtg ctttgaatct ccttggacta ctaaagcgtt gtctgagaca
      901 gcatgcgaag actcggagga aaacaagcag agaataacag gtgcccagac tctaccaaag
      961 cacgtatcta ccagcagtga tgaagggagc cccagcgcca gcaccccaat gatcagcaaa
     1021 actggcttca aattttcagc tgaaaagccc gtgattgaag tccccagcat gaccatcctg
     1081 gacaaaaagg acggggaaca ggccaaagcc ctgtttgaga aagtgaggaa gttccgtgct
     1141 cacgtggaag acagtgactt gatctataaa ctctacgtgg tccaaacagt tatcaaaaca
     1201 gccaagttca tctttatcct ctgctacact gcaaacttcg tcaatgcgat cagctttgaa
     1261 cacgtctgca agcccaaagt tgagcacctg acgggttacg aggtgtttga gtgcacccac
     1321 aacatggcat acatgctgaa aaaactgctc atcagttaca tatccattat ttgcgtttat
     1381 ggttttatct gcctctacac tctcttctgg ttattcagga tacctttgaa ggaatattct
     1441 tttgaaaaag tcagagaaga gagcagtttc agtgacattc cagatgtcaa aaatgatttt
     1501 gcgttccttc tacacatggt agaccagtat gaccagctgt attccaagcg tttcggggtg
     1561 ttcttgtcgg aagtcagtga aaataaactg agggaaatca gtttgaacca cgagtggaca
     1621 tttgaaaaac tgaggcagca cgtgtcacgc aacgcccagg acaagcagga gctccatctg
     1681 tttatgctct caggtgtgcc cgatgctgtc ttcgacctca cagacctgga tgtgctaaaa
     1741 ctcgagctga tcccagaagc taaaattcct gctaagattt ctcagatgac taacctccaa
     1801 gagcttcacc tctgccactg ccctgcaaaa gtggaacaga ctgcttttag cttcctccgt
     1861 gatcacttga gatgccttca cgtgaagttc accgacgtgg cagaaattcc cgcctgggtg
     1921 tatctgctca aaaaccttcg cgagctgtac ttgataggca acttgaactc tgaaaacaat
     1981 aagatgatag gacttgaatc cctccgagag ttgcggcacc ttaagattct ccacgtgaag
     2041 agcaatctga ccaaagtccc ctccaacatt acagatgtgg ctccgcatct cacaaggtta
     2101 gtcgttcata atgacggcac taaactcctg gtactgaaca gccttaagaa gatgatgaat
     2161 gtcgccgagc tcgagctcca gaactgtgag ctagagagaa ttccacatgc tattttcagc
     2221 ctctctaact tgcaggaact agatttaaag tcaaataaca tacgcacaat tgaagaaatc
     2281 atcagtttcc agcatttaaa gcgactgact tgtttaaaac tgtggcataa taaaatcgtt
     2341 accattccac cctccatcac ccacgtcaaa aacttggagt cactttattt ctctaacaac
     2401 aagctcgaat ccctacctgt ggcagtgttt agtttacaga aactcagatg cttagatgta
     2461 agctacaaca acatttccat gatcccaata gaaataggat tacttcagaa cctgcagcat
     2521 ttgcatatca cggggaacaa agtggacgtt ctgccaaaac agttgtttaa atgcattaag
     2581 ttgaggactt tgaatctggg gcagaactgc atcacttccc tcccagagaa gatcggtcag
     2641 ctctcccagc tcacccagct ggagctgaaa gggaactgct tggaccgcct gccagcccag
     2701 ctgggccagt gtcgcctgct caagaagagc gggcttgttg tggaagatca cctttttgac
     2761 accctgccac tcgaagtcaa agaagcattg aatcaagaca taaatattcc ctttgcaaat
     2821 gggatttaaa ctgagatcag atgtgcacat ccgtgtgcag gaacaacttc ctagatggca
     2881 agtgctcatg taccagttat tgcaagataa tgcattttag gagtagatac acctttaaaa
     2941 atacaacaga gaggatgcat agaaggctga tagaagacat aactgaatgt tcaacgttta
     3001 tagtgtgtta agtcattcac ttccaaatct ttttcttttt tcttttgggg aaagggaagg
     3061 aaaaattata atcactaatc ttggtttctt tttaaattgt ttgtaacttg gatgctgccg
     3121 ctactgaatg tttacaaatt gcttgcctgc taaagtaaat gattaaattg acattttctt
     3181 actataccac ctttttttga ggtgtcttga tttactttgc tgaattggtg caatagtcct
     3241 ttagctcaga cctctgaagg cgtatcaggt ccgatcttgt aaattcagat tcgctgaaat
     3301 actgatttct tttttgtttt aatttcaagc acctcaaata agcacttctt ataatattta
     3361 actggtgcta ccgcttctga gaatcccatt ttatagattt tacactctga aaggcctgga
     3421 atgcagtaaa agtgtgtagg gcgtcgaggg agttttgttt gtttgtttgt ttgtttgttt
     3481 tctaagaata aataacaaga aaaaataaaa
//
LOCUS       XM_032610496            3469 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit D (LRRC8D), transcript variant X5, mRNA.
ACCESSION   XM_032610496
VERSION     XM_032610496.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3469
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3469
                     /gene="LRRC8D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 10 long SRA reads, 20
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742655"
     CDS             221..2788
                     /gene="LRRC8D"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8D"
                     /protein_id="XP_032466387.1"
                     /db_xref="GeneID:116742655"
                     /translation="MFTLAEVASLNDIQPTYRILKPWWDVFMDYLAVVMLMVAIFAGT
                     MQLTKDQVVCLPVLPSPVNSKAHTPPGSADVTTNIPKVESATDQDQDGRMTNEISFGA
                     SAVTPDIPLRATYPHTDSTVPNQEAKKDPAGRKTNLDFQQYVFINQMCYHLALPWYSK
                     YFPYLALIHTIILMVSSNFWFKYPKTCSKVEHFVSILGKCFESPWTTKALSETACEDS
                     EENKQRITGAQTLPKHVSTSSDEGSPSASTPMISKTGFKFSAEKPVIEVPSMTILDKK
                     DGEQAKALFEKVRKFRAHVEDSDLIYKLYVVQTVIKTAKFIFILCYTANFVNAISFEH
                     VCKPKVEHLTGYEVFECTHNMAYMLKKLLISYISIICVYGFICLYTLFWLFRIPLKEY
                     SFEKVREESSFSDIPDVKNDFAFLLHMVDQYDQLYSKRFGVFLSEVSENKLREISLNH
                     EWTFEKLRQHVSRNAQDKQELHLFMLSGVPDAVFDLTDLDVLKLELIPEAKIPAKISQ
                     MTNLQELHLCHCPAKVEQTAFSFLRDHLRCLHVKFTDVAEIPAWVYLLKNLRELYLIG
                     NLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSNITDVAPHLTRLVVHNDGTKLLV
                     LNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHLKRL
                     TCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPVAVFSLQKLRCLDVSYNNISM
                     IPIEIGLLQNLQHLHITGNKVDVLPKQLFKCIKLRTLNLGQNCITSLPEKIGQLSQLT
                     QLELKGNCLDRLPAQLGQCRLLKKSGLVVEDHLFDTLPLEVKEALNQDINIPFANGI"
     misc_feature    221..1363
                     /gene="LRRC8D"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1754..1819
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1847..>2650
                     /gene="LRRC8D"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1895..1978
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1979..2056
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2120..2188
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2189..2263
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2264..2332
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2333..2401
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2402..2470
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2471..2539
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2540..2608
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2609..2671
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gctttcggca gtttgagcgg cgggcgccgc ggtagccgag tgggccccgc gagagcacag
       61 tgcctgcgac cgcctccctt cggctccccc cacgcgcgct cccttctctc gcctccctcc
      121 gccccatcgg aagggcgggg agacccggtt acggctccac tgattcttcc cggaggtggg
      181 tgtttggtgt ctggcctcgc tggcccactg cccagaagga atgtttaccc ttgcggaagt
      241 tgcttcactt aatgacattc aaccaactta ccgaatcctg aaaccatggt gggacgtgtt
      301 tatggattac ctggctgtcg ttatgttgat ggtagccatc tttgcaggaa ccatgcaact
      361 taccaaagat caggtggtct gcttgccagt attgccatct cctgtaaatt caaaggcaca
      421 cacaccacca ggaagtgccg acgttaccac caacatcccg aaggtggagt cagccacaga
      481 ccaagaccaa gatgggcgga tgacaaatga gatttccttt ggcgcatctg ctgtgacacc
      541 tgacatacct ctcagagcca catatcctca cacagattcc acggttccaa atcaggaggc
      601 aaagaaagac ccagcaggcc gaaaaacaaa cttggatttt cagcaatatg tatttattaa
      661 tcagatgtgt taccacctgg cccttccgtg gtattctaag tactttccgt accttgctct
      721 tatacatact attattctca tggtcagtag caacttttgg ttcaaatatc ccaaaacatg
      781 ctcaaaagta gaacatttcg tttcaatatt aggaaagtgc tttgaatctc cttggactac
      841 taaagcgttg tctgagacag catgcgaaga ctcggaggaa aacaagcaga gaataacagg
      901 tgcccagact ctaccaaagc acgtatctac cagcagtgat gaagggagcc ccagcgccag
      961 caccccaatg atcagcaaaa ctggcttcaa attttcagct gaaaagcccg tgattgaagt
     1021 ccccagcatg accatcctgg acaaaaagga cggggaacag gccaaagccc tgtttgagaa
     1081 agtgaggaag ttccgtgctc acgtggaaga cagtgacttg atctataaac tctacgtggt
     1141 ccaaacagtt atcaaaacag ccaagttcat ctttatcctc tgctacactg caaacttcgt
     1201 caatgcgatc agctttgaac acgtctgcaa gcccaaagtt gagcacctga cgggttacga
     1261 ggtgtttgag tgcacccaca acatggcata catgctgaaa aaactgctca tcagttacat
     1321 atccattatt tgcgtttatg gttttatctg cctctacact ctcttctggt tattcaggat
     1381 acctttgaag gaatattctt ttgaaaaagt cagagaagag agcagtttca gtgacattcc
     1441 agatgtcaaa aatgattttg cgttccttct acacatggta gaccagtatg accagctgta
     1501 ttccaagcgt ttcggggtgt tcttgtcgga agtcagtgaa aataaactga gggaaatcag
     1561 tttgaaccac gagtggacat ttgaaaaact gaggcagcac gtgtcacgca acgcccagga
     1621 caagcaggag ctccatctgt ttatgctctc aggtgtgccc gatgctgtct tcgacctcac
     1681 agacctggat gtgctaaaac tcgagctgat cccagaagct aaaattcctg ctaagatttc
     1741 tcagatgact aacctccaag agcttcacct ctgccactgc cctgcaaaag tggaacagac
     1801 tgcttttagc ttcctccgtg atcacttgag atgccttcac gtgaagttca ccgacgtggc
     1861 agaaattccc gcctgggtgt atctgctcaa aaaccttcgc gagctgtact tgataggcaa
     1921 cttgaactct gaaaacaata agatgatagg acttgaatcc ctccgagagt tgcggcacct
     1981 taagattctc cacgtgaaga gcaatctgac caaagtcccc tccaacatta cagatgtggc
     2041 tccgcatctc acaaggttag tcgttcataa tgacggcact aaactcctgg tactgaacag
     2101 ccttaagaag atgatgaatg tcgccgagct cgagctccag aactgtgagc tagagagaat
     2161 tccacatgct attttcagcc tctctaactt gcaggaacta gatttaaagt caaataacat
     2221 acgcacaatt gaagaaatca tcagtttcca gcatttaaag cgactgactt gtttaaaact
     2281 gtggcataat aaaatcgtta ccattccacc ctccatcacc cacgtcaaaa acttggagtc
     2341 actttatttc tctaacaaca agctcgaatc cctacctgtg gcagtgttta gtttacagaa
     2401 actcagatgc ttagatgtaa gctacaacaa catttccatg atcccaatag aaataggatt
     2461 acttcagaac ctgcagcatt tgcatatcac ggggaacaaa gtggacgttc tgccaaaaca
     2521 gttgtttaaa tgcattaagt tgaggacttt gaatctgggg cagaactgca tcacttccct
     2581 cccagagaag atcggtcagc tctcccagct cacccagctg gagctgaaag ggaactgctt
     2641 ggaccgcctg ccagcccagc tgggccagtg tcgcctgctc aagaagagcg ggcttgttgt
     2701 ggaagatcac ctttttgaca ccctgccact cgaagtcaaa gaagcattga atcaagacat
     2761 aaatattccc tttgcaaatg ggatttaaac tgagatcaga tgtgcacatc cgtgtgcagg
     2821 aacaacttcc tagatggcaa gtgctcatgt accagttatt gcaagataat gcattttagg
     2881 agtagataca cctttaaaaa tacaacagag aggatgcata gaaggctgat agaagacata
     2941 actgaatgtt caacgtttat agtgtgttaa gtcattcact tccaaatctt tttctttttt
     3001 cttttgggga aagggaagga aaaattataa tcactaatct tggtttcttt ttaaattgtt
     3061 tgtaacttgg atgctgccgc tactgaatgt ttacaaattg cttgcctgct aaagtaaatg
     3121 attaaattga cattttctta ctataccacc tttttttgag gtgtcttgat ttactttgct
     3181 gaattggtgc aatagtcctt tagctcagac ctctgaaggc gtatcaggtc cgatcttgta
     3241 aattcagatt cgctgaaata ctgatttctt ttttgtttta atttcaagca cctcaaataa
     3301 gcacttctta taatatttaa ctggtgctac cgcttctgag aatcccattt tatagatttt
     3361 acactctgaa aggcctggaa tgcagtaaaa gtgtgtaggg cgtcgaggga gttttgtttg
     3421 tttgtttgtt tgtttgtttt ctaagaataa ataacaagaa aaaataaaa
//
LOCUS       XM_032610502            3615 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit D (LRRC8D), transcript variant X6, mRNA.
ACCESSION   XM_032610502
VERSION     XM_032610502.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3615
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3615
                     /gene="LRRC8D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742655"
     CDS             367..2934
                     /gene="LRRC8D"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8D"
                     /protein_id="XP_032466393.1"
                     /db_xref="GeneID:116742655"
                     /translation="MFTLAEVASLNDIQPTYRILKPWWDVFMDYLAVVMLMVAIFAGT
                     MQLTKDQVVCLPVLPSPVNSKAHTPPGSADVTTNIPKVESATDQDQDGRMTNEISFGA
                     SAVTPDIPLRATYPHTDSTVPNQEAKKDPAGRKTNLDFQQYVFINQMCYHLALPWYSK
                     YFPYLALIHTIILMVSSNFWFKYPKTCSKVEHFVSILGKCFESPWTTKALSETACEDS
                     EENKQRITGAQTLPKHVSTSSDEGSPSASTPMISKTGFKFSAEKPVIEVPSMTILDKK
                     DGEQAKALFEKVRKFRAHVEDSDLIYKLYVVQTVIKTAKFIFILCYTANFVNAISFEH
                     VCKPKVEHLTGYEVFECTHNMAYMLKKLLISYISIICVYGFICLYTLFWLFRIPLKEY
                     SFEKVREESSFSDIPDVKNDFAFLLHMVDQYDQLYSKRFGVFLSEVSENKLREISLNH
                     EWTFEKLRQHVSRNAQDKQELHLFMLSGVPDAVFDLTDLDVLKLELIPEAKIPAKISQ
                     MTNLQELHLCHCPAKVEQTAFSFLRDHLRCLHVKFTDVAEIPAWVYLLKNLRELYLIG
                     NLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSNITDVAPHLTRLVVHNDGTKLLV
                     LNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHLKRL
                     TCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPVAVFSLQKLRCLDVSYNNISM
                     IPIEIGLLQNLQHLHITGNKVDVLPKQLFKCIKLRTLNLGQNCITSLPEKIGQLSQLT
                     QLELKGNCLDRLPAQLGQCRLLKKSGLVVEDHLFDTLPLEVKEALNQDINIPFANGI"
     misc_feature    367..1509
                     /gene="LRRC8D"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1900..1965
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1993..>2796
                     /gene="LRRC8D"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    2041..2124
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2125..2202
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2266..2334
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2335..2409
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2410..2478
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2479..2547
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2548..2616
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2617..2685
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2686..2754
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2755..2817
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gagggctcgc cccgccctca gcgcgagagg gagggagccg ggggcccgca ggtgcaccca
       61 gcccgccccg ggccatctcc gggttgggta ccggtataat ccgcttctag cttgtttgga
      121 agcgtgggca cttgggagcc ggacttctgc tcaaatcccg ttcagtggct tggaaaggag
      181 gaggcttggg gagtggttgc tcaggaaatc atcacctccg cttactggag ggttgatagg
      241 ggccttcctc tttctctccc ccttcatttg gggtatccct tatggataaa gagatgagtt
      301 tttttggttt cttacaaagc cagccacggt aaagaagagc tgccgcaggt cgaggggagg
      361 agaggaatgt ttacccttgc ggaagttgct tcacttaatg acattcaacc aacttaccga
      421 atcctgaaac catggtggga cgtgtttatg gattacctgg ctgtcgttat gttgatggta
      481 gccatctttg caggaaccat gcaacttacc aaagatcagg tggtctgctt gccagtattg
      541 ccatctcctg taaattcaaa ggcacacaca ccaccaggaa gtgccgacgt taccaccaac
      601 atcccgaagg tggagtcagc cacagaccaa gaccaagatg ggcggatgac aaatgagatt
      661 tcctttggcg catctgctgt gacacctgac atacctctca gagccacata tcctcacaca
      721 gattccacgg ttccaaatca ggaggcaaag aaagacccag caggccgaaa aacaaacttg
      781 gattttcagc aatatgtatt tattaatcag atgtgttacc acctggccct tccgtggtat
      841 tctaagtact ttccgtacct tgctcttata catactatta ttctcatggt cagtagcaac
      901 ttttggttca aatatcccaa aacatgctca aaagtagaac atttcgtttc aatattagga
      961 aagtgctttg aatctccttg gactactaaa gcgttgtctg agacagcatg cgaagactcg
     1021 gaggaaaaca agcagagaat aacaggtgcc cagactctac caaagcacgt atctaccagc
     1081 agtgatgaag ggagccccag cgccagcacc ccaatgatca gcaaaactgg cttcaaattt
     1141 tcagctgaaa agcccgtgat tgaagtcccc agcatgacca tcctggacaa aaaggacggg
     1201 gaacaggcca aagccctgtt tgagaaagtg aggaagttcc gtgctcacgt ggaagacagt
     1261 gacttgatct ataaactcta cgtggtccaa acagttatca aaacagccaa gttcatcttt
     1321 atcctctgct acactgcaaa cttcgtcaat gcgatcagct ttgaacacgt ctgcaagccc
     1381 aaagttgagc acctgacggg ttacgaggtg tttgagtgca cccacaacat ggcatacatg
     1441 ctgaaaaaac tgctcatcag ttacatatcc attatttgcg tttatggttt tatctgcctc
     1501 tacactctct tctggttatt caggatacct ttgaaggaat attcttttga aaaagtcaga
     1561 gaagagagca gtttcagtga cattccagat gtcaaaaatg attttgcgtt ccttctacac
     1621 atggtagacc agtatgacca gctgtattcc aagcgtttcg gggtgttctt gtcggaagtc
     1681 agtgaaaata aactgaggga aatcagtttg aaccacgagt ggacatttga aaaactgagg
     1741 cagcacgtgt cacgcaacgc ccaggacaag caggagctcc atctgtttat gctctcaggt
     1801 gtgcccgatg ctgtcttcga cctcacagac ctggatgtgc taaaactcga gctgatccca
     1861 gaagctaaaa ttcctgctaa gatttctcag atgactaacc tccaagagct tcacctctgc
     1921 cactgccctg caaaagtgga acagactgct tttagcttcc tccgtgatca cttgagatgc
     1981 cttcacgtga agttcaccga cgtggcagaa attcccgcct gggtgtatct gctcaaaaac
     2041 cttcgcgagc tgtacttgat aggcaacttg aactctgaaa acaataagat gataggactt
     2101 gaatccctcc gagagttgcg gcaccttaag attctccacg tgaagagcaa tctgaccaaa
     2161 gtcccctcca acattacaga tgtggctccg catctcacaa ggttagtcgt tcataatgac
     2221 ggcactaaac tcctggtact gaacagcctt aagaagatga tgaatgtcgc cgagctcgag
     2281 ctccagaact gtgagctaga gagaattcca catgctattt tcagcctctc taacttgcag
     2341 gaactagatt taaagtcaaa taacatacgc acaattgaag aaatcatcag tttccagcat
     2401 ttaaagcgac tgacttgttt aaaactgtgg cataataaaa tcgttaccat tccaccctcc
     2461 atcacccacg tcaaaaactt ggagtcactt tatttctcta acaacaagct cgaatcccta
     2521 cctgtggcag tgtttagttt acagaaactc agatgcttag atgtaagcta caacaacatt
     2581 tccatgatcc caatagaaat aggattactt cagaacctgc agcatttgca tatcacgggg
     2641 aacaaagtgg acgttctgcc aaaacagttg tttaaatgca ttaagttgag gactttgaat
     2701 ctggggcaga actgcatcac ttccctccca gagaagatcg gtcagctctc ccagctcacc
     2761 cagctggagc tgaaagggaa ctgcttggac cgcctgccag cccagctggg ccagtgtcgc
     2821 ctgctcaaga agagcgggct tgttgtggaa gatcaccttt ttgacaccct gccactcgaa
     2881 gtcaaagaag cattgaatca agacataaat attccctttg caaatgggat ttaaactgag
     2941 atcagatgtg cacatccgtg tgcaggaaca acttcctaga tggcaagtgc tcatgtacca
     3001 gttattgcaa gataatgcat tttaggagta gatacacctt taaaaataca acagagagga
     3061 tgcatagaag gctgatagaa gacataactg aatgttcaac gtttatagtg tgttaagtca
     3121 ttcacttcca aatctttttc ttttttcttt tggggaaagg gaaggaaaaa ttataatcac
     3181 taatcttggt ttctttttaa attgtttgta acttggatgc tgccgctact gaatgtttac
     3241 aaattgcttg cctgctaaag taaatgatta aattgacatt ttcttactat accacctttt
     3301 tttgaggtgt cttgatttac tttgctgaat tggtgcaata gtcctttagc tcagacctct
     3361 gaaggcgtat caggtccgat cttgtaaatt cagattcgct gaaatactga tttctttttt
     3421 gttttaattt caagcacctc aaataagcac ttcttataat atttaactgg tgctaccgct
     3481 tctgagaatc ccattttata gattttacac tctgaaaggc ctggaatgca gtaaaagtgt
     3541 gtagggcgtc gagggagttt tgtttgtttg tttgtttgtt tgttttctaa gaataaataa
     3601 caagaaaaaa taaaa
//
LOCUS       XM_032610509            3294 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit D (LRRC8D), transcript variant X7, mRNA.
ACCESSION   XM_032610509
VERSION     XM_032610509.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3294
                     /gene="LRRC8D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 long SRA reads, 21
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116742655"
     CDS             46..2613
                     /gene="LRRC8D"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8D"
                     /protein_id="XP_032466400.1"
                     /db_xref="GeneID:116742655"
                     /translation="MFTLAEVASLNDIQPTYRILKPWWDVFMDYLAVVMLMVAIFAGT
                     MQLTKDQVVCLPVLPSPVNSKAHTPPGSADVTTNIPKVESATDQDQDGRMTNEISFGA
                     SAVTPDIPLRATYPHTDSTVPNQEAKKDPAGRKTNLDFQQYVFINQMCYHLALPWYSK
                     YFPYLALIHTIILMVSSNFWFKYPKTCSKVEHFVSILGKCFESPWTTKALSETACEDS
                     EENKQRITGAQTLPKHVSTSSDEGSPSASTPMISKTGFKFSAEKPVIEVPSMTILDKK
                     DGEQAKALFEKVRKFRAHVEDSDLIYKLYVVQTVIKTAKFIFILCYTANFVNAISFEH
                     VCKPKVEHLTGYEVFECTHNMAYMLKKLLISYISIICVYGFICLYTLFWLFRIPLKEY
                     SFEKVREESSFSDIPDVKNDFAFLLHMVDQYDQLYSKRFGVFLSEVSENKLREISLNH
                     EWTFEKLRQHVSRNAQDKQELHLFMLSGVPDAVFDLTDLDVLKLELIPEAKIPAKISQ
                     MTNLQELHLCHCPAKVEQTAFSFLRDHLRCLHVKFTDVAEIPAWVYLLKNLRELYLIG
                     NLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSNITDVAPHLTRLVVHNDGTKLLV
                     LNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHLKRL
                     TCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPVAVFSLQKLRCLDVSYNNISM
                     IPIEIGLLQNLQHLHITGNKVDVLPKQLFKCIKLRTLNLGQNCITSLPEKIGQLSQLT
                     QLELKGNCLDRLPAQLGQCRLLKKSGLVVEDHLFDTLPLEVKEALNQDINIPFANGI"
     misc_feature    46..1188
                     /gene="LRRC8D"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    1579..1644
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1672..>2475
                     /gene="LRRC8D"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1720..1803
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1804..1881
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1945..2013
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2014..2088
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2089..2157
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2158..2226
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2227..2295
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2296..2364
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2365..2433
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2434..2496
                     /gene="LRRC8D"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 gggcggggag acccggttac ggctccactg attcttcccg gaggaatgtt tacccttgcg
       61 gaagttgctt cacttaatga cattcaacca acttaccgaa tcctgaaacc atggtgggac
      121 gtgtttatgg attacctggc tgtcgttatg ttgatggtag ccatctttgc aggaaccatg
      181 caacttacca aagatcaggt ggtctgcttg ccagtattgc catctcctgt aaattcaaag
      241 gcacacacac caccaggaag tgccgacgtt accaccaaca tcccgaaggt ggagtcagcc
      301 acagaccaag accaagatgg gcggatgaca aatgagattt cctttggcgc atctgctgtg
      361 acacctgaca tacctctcag agccacatat cctcacacag attccacggt tccaaatcag
      421 gaggcaaaga aagacccagc aggccgaaaa acaaacttgg attttcagca atatgtattt
      481 attaatcaga tgtgttacca cctggccctt ccgtggtatt ctaagtactt tccgtacctt
      541 gctcttatac atactattat tctcatggtc agtagcaact tttggttcaa atatcccaaa
      601 acatgctcaa aagtagaaca tttcgtttca atattaggaa agtgctttga atctccttgg
      661 actactaaag cgttgtctga gacagcatgc gaagactcgg aggaaaacaa gcagagaata
      721 acaggtgccc agactctacc aaagcacgta tctaccagca gtgatgaagg gagccccagc
      781 gccagcaccc caatgatcag caaaactggc ttcaaatttt cagctgaaaa gcccgtgatt
      841 gaagtcccca gcatgaccat cctggacaaa aaggacgggg aacaggccaa agccctgttt
      901 gagaaagtga ggaagttccg tgctcacgtg gaagacagtg acttgatcta taaactctac
      961 gtggtccaaa cagttatcaa aacagccaag ttcatcttta tcctctgcta cactgcaaac
     1021 ttcgtcaatg cgatcagctt tgaacacgtc tgcaagccca aagttgagca cctgacgggt
     1081 tacgaggtgt ttgagtgcac ccacaacatg gcatacatgc tgaaaaaact gctcatcagt
     1141 tacatatcca ttatttgcgt ttatggtttt atctgcctct acactctctt ctggttattc
     1201 aggatacctt tgaaggaata ttcttttgaa aaagtcagag aagagagcag tttcagtgac
     1261 attccagatg tcaaaaatga ttttgcgttc cttctacaca tggtagacca gtatgaccag
     1321 ctgtattcca agcgtttcgg ggtgttcttg tcggaagtca gtgaaaataa actgagggaa
     1381 atcagtttga accacgagtg gacatttgaa aaactgaggc agcacgtgtc acgcaacgcc
     1441 caggacaagc aggagctcca tctgtttatg ctctcaggtg tgcccgatgc tgtcttcgac
     1501 ctcacagacc tggatgtgct aaaactcgag ctgatcccag aagctaaaat tcctgctaag
     1561 atttctcaga tgactaacct ccaagagctt cacctctgcc actgccctgc aaaagtggaa
     1621 cagactgctt ttagcttcct ccgtgatcac ttgagatgcc ttcacgtgaa gttcaccgac
     1681 gtggcagaaa ttcccgcctg ggtgtatctg ctcaaaaacc ttcgcgagct gtacttgata
     1741 ggcaacttga actctgaaaa caataagatg ataggacttg aatccctccg agagttgcgg
     1801 caccttaaga ttctccacgt gaagagcaat ctgaccaaag tcccctccaa cattacagat
     1861 gtggctccgc atctcacaag gttagtcgtt cataatgacg gcactaaact cctggtactg
     1921 aacagcctta agaagatgat gaatgtcgcc gagctcgagc tccagaactg tgagctagag
     1981 agaattccac atgctatttt cagcctctct aacttgcagg aactagattt aaagtcaaat
     2041 aacatacgca caattgaaga aatcatcagt ttccagcatt taaagcgact gacttgttta
     2101 aaactgtggc ataataaaat cgttaccatt ccaccctcca tcacccacgt caaaaacttg
     2161 gagtcacttt atttctctaa caacaagctc gaatccctac ctgtggcagt gtttagttta
     2221 cagaaactca gatgcttaga tgtaagctac aacaacattt ccatgatccc aatagaaata
     2281 ggattacttc agaacctgca gcatttgcat atcacgggga acaaagtgga cgttctgcca
     2341 aaacagttgt ttaaatgcat taagttgagg actttgaatc tggggcagaa ctgcatcact
     2401 tccctcccag agaagatcgg tcagctctcc cagctcaccc agctggagct gaaagggaac
     2461 tgcttggacc gcctgccagc ccagctgggc cagtgtcgcc tgctcaagaa gagcgggctt
     2521 gttgtggaag atcacctttt tgacaccctg ccactcgaag tcaaagaagc attgaatcaa
     2581 gacataaata ttccctttgc aaatgggatt taaactgaga tcagatgtgc acatccgtgt
     2641 gcaggaacaa cttcctagat ggcaagtgct catgtaccag ttattgcaag ataatgcatt
     2701 ttaggagtag atacaccttt aaaaatacaa cagagaggat gcatagaagg ctgatagaag
     2761 acataactga atgttcaacg tttatagtgt gttaagtcat tcacttccaa atctttttct
     2821 tttttctttt ggggaaaggg aaggaaaaat tataatcact aatcttggtt tctttttaaa
     2881 ttgtttgtaa cttggatgct gccgctactg aatgtttaca aattgcttgc ctgctaaagt
     2941 aaatgattaa attgacattt tcttactata ccaccttttt ttgaggtgtc ttgatttact
     3001 ttgctgaatt ggtgcaatag tcctttagct cagacctctg aaggcgtatc aggtccgatc
     3061 ttgtaaattc agattcgctg aaatactgat ttcttttttg ttttaatttc aagcacctca
     3121 aataagcact tcttataata tttaactggt gctaccgctt ctgagaatcc cattttatag
     3181 attttacact ctgaaaggcc tggaatgcag taaaagtgtg tagggcgtcg agggagtttt
     3241 gtttgtttgt ttgtttgttt gttttctaag aataaataac aagaaaaaat aaaa
//
LOCUS       XM_032610514            6986 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 8 VRAC
            subunit C (LRRC8C), mRNA.
ACCESSION   XM_032610514
VERSION     XM_032610514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6986
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6986
                     /gene="LRRC8C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 16 long SRA reads, 26
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742682"
     CDS             295..2703
                     /gene="LRRC8C"
                     /codon_start=1
                     /product="volume-regulated anion channel subunit LRRC8C"
                     /protein_id="XP_032466405.1"
                     /db_xref="GeneID:116742682"
                     /translation="MIPVTEFRQFSEQQPAFRVLKPWWDVFTDYLSVAMLMIGVFGCT
                     LQVMQDKIICLPKRVQASQNQSSVSNVSQAVASTTPLPPPKPSPTNPVTVEMKGLKTD
                     LDLQQYSFINQMCYERALHWYAKYFPYLVLIHTLVFMLCSNFWFKFPGSSSKIEHFIS
                     ILGKCFDSPWTTRALSEVSGEDSEEKDNRKNVSRSNATPSGPEGGLVNSQSLKSIPEK
                     FVVDKSTAGALDKKEGEQAKALFEKVKKFRLHVEEGDILYAMYVRQTVLKVIKFLIII
                     AYNSALVSKVQFTVDCNVDIQDMTGYKNFSCNHTMAHLFSKLSFCYLCFVSIYGLTCL
                     YTLYWLFYRSLREYSFEYVRQETGIDDIPDVKNDFAFMLHMIDQYDPLYSKRFAVFLS
                     EVSENKLKQLNLNNEWTPDKLRQKLQTNAHNRLELPLIMLSGLPDTVFEITELQSLKL
                     EIIKNVMIPATIAQLDNLQELSLHQCSVKIHSAALSFLKENLKVLSVKFDDMRELPPW
                     MYGLRNLEELYLVGSLSHDIYKNITLESLRDLKSLKILSIKSNVSKIPQAVVDVSSHL
                     QKMCIHNDGTKLVMLNNLKKMTNLTELELVHCDLERIPHAVFSLLSLQELDLKENNLK
                     SIEEIVSFQHLRKLTVLKLWYNSITYIPEHIKKLTSLERLFFSHNKIEVLPSHLFLCN
                     KIRYLDLSYNDIRFIPPEIGVLQSLQYFSITCNKVESLPDELYFCKKLKTLKIGKNSL
                     SVLSPKIGNLLFLSYLDVKGNHFEILPPELGDCRALKRAGLVVEDALFETLPSDVREQ
                     MKTE"
     misc_feature    295..1305
                     /gene="LRRC8C"
                     /note="Pannexin-like TM region of LRRC8; Region:
                     Pannexin_like; pfam12534"
                     /db_xref="CDD:463622"
     misc_feature    <1564..>2286
                     /gene="LRRC8C"
                     /note="Resistant to P. syringae 6; Provisional; Region:
                     PLN03210"
                     /db_xref="CDD:215633"
     misc_feature    1627..1695
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1696..1767
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1768..1836
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1837..1920
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1921..1989
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1990..2061
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <2035..>2607
                     /gene="LRRC8C"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    2062..2130
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2131..2205
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2206..2274
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2275..2343
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2413..2481
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2482..2547
                     /gene="LRRC8C"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
ORIGIN      
        1 tggcccggct gcttgcaggg cggcgctgga ggcggctcca tccgcggccg gggaggcgga
       61 ggggcggagg gctgcgaggc tgtggcgtta gctgcgtccc ggctcggagc ccgcgaagag
      121 gactaggagg aaggcgcctc agtggccgca gccgcagtgc tctgagcgcg acgagccatg
      181 agcagcggcc ccgcgagcga ccccgctgtc gctggccgcc gctgagcccg gccgggggac
      241 ggctcgccgc tccccagcac cctttgcaga cggcaccctc tcgcctagag aaacatgatt
      301 ccggtgacag agttccggca gttctctgag cagcagcctg ccttccgggt tctgaagcca
      361 tggtgggatg tatttaccga ctacttgtcc gtggccatgc tgatgatcgg tgtgttcgga
      421 tgcactctgc aggtcatgca agacaagata atctgccttc caaagagagt gcaggcttct
      481 cagaaccagt cttccgtttc gaatgtctct caagcagtgg ccagtaccac ccccctgcct
      541 ccaccgaaac cgtctcccac taacccagtc actgtggaaa tgaaaggact gaagacagat
      601 ttggaccttc agcagtacag cttcattaac cagatgtgct atgagcgagc cctccactgg
      661 tacgccaagt atttccctta ccttgtcctc atccataccc tggtcttcat gctctgtagc
      721 aacttttggt tcaaattccc tggttccagc tccaaaatag aacatttcat ctcaatcctg
      781 gggaagtgtt ttgactctcc ctggaccaca cgggctttat ctgaagtgtc tggggaggac
      841 tcagaagaaa aggacaacag gaagaacgtg agcaggtcca acgccacccc gtctggtccg
      901 gaaggcggcc tggtcaactc tcagtcttta aagtcaattc ctgagaagtt tgtggttgac
      961 aaatccactg caggggctct agataagaag gagggtgagc aagcgaaggc tttatttgag
     1021 aaggtgaaga agttcaggct gcacgtagaa gaaggtgata tattatacgc tatgtatgtt
     1081 cgtcagactg tacttaaggt tataaaattc ctaatcatca ttgcatataa tagcgccctg
     1141 gtttccaaag tccaatttac agtggactgc aatgttgaca ttcaggacat gactggatat
     1201 aagaactttt cctgcaatca caccatggca cacttgttct cgaaactctc cttttgctac
     1261 ttgtgctttg taagtatcta cggattgacg tgcctttata ccttatactg gctgttctac
     1321 cgttctctga gggagtactc ttttgagtac gtccggcagg aaactggaat tgatgatatt
     1381 ccagacgtga aaaatgactt tgcttttatg cttcatatga tagatcagta cgaccctctg
     1441 tattccaaga gatttgcagt gttcctatct gaagtgagtg aaaacaaatt aaagcagctg
     1501 aacttaaaca acgagtggac tccggataaa ctgaggcaga agctgcagac gaatgcccat
     1561 aaccgcctgg aattgcctct catcatgctc tctggccttc cagacactgt ttttgaaatc
     1621 acggagttgc agtctctaaa acttgaaatc attaagaatg tcatgatacc agccaccatt
     1681 gcacagctag acaatctcca ggagctctct ctgcaccagt gctcggtcaa aatccacagc
     1741 gcggcgctct ccttcctgaa ggagaacctc aaggtcttga gcgtcaagtt tgatgatatg
     1801 agggagctgc ccccctggat gtatggcctc cggaacctgg aggagctcta cctggttggc
     1861 tctctaagtc acgatattta caaaaatatc acccttgagt ctctgcggga tctcaaaagc
     1921 cttaaaattc tctctatcaa aagcaatgtt tccaaaatcc cacaggcagt ggttgatgtt
     1981 tccagccatc tccagaagat gtgcatacac aacgatggca ccaagctggt gatgcttaac
     2041 aatctgaaga agatgaccaa tctgacagag ctggagctgg tccactgtga cctggagcgc
     2101 attcctcacg ccgtgttcag cctgcttagc ctccaggaat tggacctcaa ggaaaataat
     2161 ctgaagtcta tagaagagat cgttagcttc cagcacttga gaaagttgac agtgctaaaa
     2221 ctgtggtata acagcatcac ctacatccca gagcatataa agaaactcac cagcctggag
     2281 cgcctcttct ttagtcacaa taaaatagag gtgctgcctt cccatctctt cctatgcaac
     2341 aagatccgat acctggactt gtcctacaat gacattagat ttatcccgcc tgagatcgga
     2401 gttctacaaa gtttacagta tttttccatc acttgtaaca aagtggagag ccttccagat
     2461 gaactctatt tctgtaagaa actcaaaact ctgaagattg ggaaaaacag cctatcagta
     2521 ctttcaccaa aaattggaaa tttactattt ctctcctatt tagatgtcaa aggcaatcac
     2581 tttgaaattc tccctcccga actgggcgac tgtcgggctc tgaagcgagc tggtttagtt
     2641 gtagaagatg ctctgtttga aaccctgcct tctgatgtcc gggagcaaat gaaaacagaa
     2701 taacttattt ttgtttaaag tttgactgaa acatgcttct accaaataca gtataaataa
     2761 ttaggtagtc ttaatgcctt tcctatttta ttattttttt ctttttcaca caaaacaaaa
     2821 tgtacacaaa gactgagtaa ggagtatgta tttttaataa aaagttaatt gtattttttc
     2881 aatattaata ttttaaagtt ttatttgtcc tggaacctaa tgtatctatt actgttttct
     2941 actgacagaa acagatggtt ccgtctgttt ttttgttttg gttgctttgt ttgttttggt
     3001 ttttcagttc attcttgtga agggaaggga actttaagtt gcatgctttt ggtgtttttt
     3061 aaatccatga agatattttg ccaaggtcat ttttagcttg tttacacctg tacagggtcc
     3121 ttacttttgt tttcattgta tgtgtaccaa ggaatctgtg ctagttattt taattccagc
     3181 tgccttctcc attggccaag tatttcattc tatagaaaac acttctctgg ggtgtaaact
     3241 cacataaggg cattgtcata gactattgtt ttcgaaattt ccccttgcct ccaacagagc
     3301 cctaaattct attgtttcac atacctgaca gttatttatc cttaggcaag gattctgtaa
     3361 gtgagtaaag acagtaatct cctgtggtca gcttgcttga attggtcgtt tataatttaa
     3421 ctgatttgca tttttaccaa catttaaaaa atatcattga aaaggaaata cagaggttcc
     3481 tcccatttaa tatcaatatt gtatgtagta ctggtgaaca accttagaaa ttctaattta
     3541 ttttaattaa aataggtaat taaatttaaa aatcagaagc ctgtttttta gtaacttaat
     3601 catctttgat atcttgatac gtgaatacat ccgatggaag aaaaacaaat gtgctactaa
     3661 agcactctgc taaagagctg atgcactcca ggcaggcaca ctggttcctc tgggtagtgt
     3721 ggaagtgggg atctctgttc aaattctgcc tgttacacga aataatccac atatgtgtac
     3781 gtatataaat ctatctccct caagcctgtc cttgctgcaa atgttagtga tgcaagcaca
     3841 gaaagtctgc tctctttggc ttaaaaaaaa gtatctcatc taaaatggtt ctgttccttt
     3901 ttttttttct tttttaagtg tgaataaatt gctaagtaga tagaaataat ttttgcctgg
     3961 tggttagcca agttttattt atctctgtac ttaaacatcc aacatagtat gggtcttggg
     4021 cacaagtttt cactgactat taagctgtat agaacaggaa aatgaaagca ctgtttgtgc
     4081 cctcaatcca ggaccagtgc tacctaatca agggaatttt gttttatgct ccaaattcac
     4141 actgttttcg gaaccctagt ctgacctaag gaagttttgt gacttaacga agaaaaatag
     4201 aaagatggtt tggggtttca agatgctgct tttaaaatct accccttgat cctggtgact
     4261 ttgtttaatg ctactttgag tcatacttgg aacacagcta tgggaactac tcagcagata
     4321 tatgtacctc aactgtgttt taaatgttat gatacttcgt ggggtaaagg atttggggaa
     4381 gagatgcttt tcatttattt aataattgaa tcatgtagac caaaatgctt tgctgtctct
     4441 gctctgtgtt taagtgttac aatggtgatt ttgtatagct ggtttatttt gccctggaat
     4501 tgaaacaaaa tgtttaaaat agtaacatgg ttatatttct tgtaggataa aatattcaat
     4561 tctagaatgt tgttaggatc ctgattatga acaatgtgtt atatttagaa acatagcgct
     4621 acctgtttta aacaaacaaa caaacctgga aggttgtcca tggctgagca tgaccctgtt
     4681 gcaaggtgag ctttgataac tactggtaaa acactaggtg cactattttt ctggataaaa
     4741 tttatagttg ttttctgtat cacccttaaa agggacctat tcaggttaaa aatcatattt
     4801 atgctgaaat ctttagctgg tgttaactca taatctcata tgtgttcata aatgaagtaa
     4861 ctaataatta gtctttgtga caatttgctc aaaatgccaa aagaatttga ttcactttct
     4921 taattatttc acaggctgac ccctaaccta agttctaaat aacatccagt aaatcagtat
     4981 agttctatga ctttctggtt taactaggaa ggaaaattca tagatgtttc tgttagattt
     5041 tataaaaatt caaaatgttc agacttcatc ttgagtctaa attttctgac cctgaccctt
     5101 tttaatattg tatatttttg ttcacattct taagtgaaaa gcattaaatt actctttagc
     5161 ctttaactgg gaaactcagg taaatgaact gctgactttt ctaaagttct ttaatgaatc
     5221 aactcagtgt taaaaggggt attaacccaa tccttttcgt atttttacaa gtgctcttgc
     5281 taaaaaggaa caactagctc tatttctcca acttctataa gactcatgag aaacagctta
     5341 tgtaaatata aaagcatcat atgtaccctt aaatcctatg gctattggac acccatagtg
     5401 agtatgcttt ttggtcagtt ttaatggtta agtgtagaac agacagttgt ctggaggtgg
     5461 tctggttgaa acaaagcatc taagtatatc ccagtggaac tcacctaaga agaccacatc
     5521 tcagaaaact agttatatgt tgggttttca ctttgttttg tttttaatac aacactttta
     5581 atataaatgt tcttgatacg gtgaaacctg ttatttacac tggtaaattt tctgattgtt
     5641 cgttcaccca cctttctctg ccttaggttt ccaatgtagc tattgtaatg agttctaaca
     5701 atttccatgg catcctgtgt gcaggcactg ctttttcaga aaggcttggg acataagcct
     5761 gctgtgaata ctttggtcat ttagaggtgc ctctttatct gcctctgaag ccatctttat
     5821 agagaggggc ttaagcaacc tggaatcttc cttgggttac ttgggatgag gaaagtctac
     5881 atttctgcaa tatgctatct tatgatttct gttataagaa agagaagaaa aaatctttac
     5941 atctcttgtt atcatttccc ccaagggttt tgctgttgtt tatgttccta attctaagaa
     6001 aagtccaatt tttaaggagt actttactct ctaatctaat ttcataccaa acacctgatc
     6061 agtagtaatg atatagtcac taaaacagtg aacactcatg atccatcttt atgaaaactg
     6121 tcagcaatat gtagtagtga atagataaga taaacctcaa aacaatttcc atttgtgttt
     6181 agagactaaa ttaagattca atttacattc tcctataaat cctgaatgtg ataatgccat
     6241 tcaagcgatt cacatttttg gtaggatctc aagaactcag ggtacatagc aaaacagcac
     6301 agttattagt gaggggaatg cctcaagggt cggtaagatt ttctcacttt ttttcttgtc
     6361 tattcagata cgttgtccag aaagcctgga cagtctcgac cagacgtgcc attgattttt
     6421 cagatttagg cctcagtgac atgcttctaa tacaattaca taccatcctt ccaaactagc
     6481 tgtccactct tactccatct tcccagagcc tttcactgat aaaggtaaca tccttgaatt
     6541 ccttttgggg tgagggaaga gggtctcctc ccaccccaag gaattttttt tatttagaag
     6601 accttaaaaa ggggtatata acttcgaaca acttaatttc ttggccatgt taaataacag
     6661 tccctatgcg tggtttcaga tgtggaataa atttgctttc tgctgaatac cattccctct
     6721 cccatacgat tctgcctatt taatgaatat ttttactagg gttgaaactc agtgccttac
     6781 gtggtcactt agttttcctt ctgctgcttg ttttctctcg ctttatgtgt tcagattgtg
     6841 tcaaatgctg gcaaaacctc taagactgtc aagaaaatgc ttgaaagttg atttgtcata
     6901 gtgtaaactc atgatacaat gtcttaaggt tattcggcta tgtagtacat aggaacagaa
     6961 aataaagtca tttttgtaat ttaaaa
//
LOCUS       XM_032610557            4295 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon lambda receptor 1 (IFNLR1),
            transcript variant X1, mRNA.
ACCESSION   XM_032610557
VERSION     XM_032610557.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4295
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4295
                     /gene="IFNLR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742717"
     CDS             40..1593
                     /gene="IFNLR1"
                     /codon_start=1
                     /product="interferon lambda receptor 1 isoform X1"
                     /protein_id="XP_032466448.1"
                     /db_xref="GeneID:116742717"
                     /translation="MTGAPRWASLLLCLLQSTSGRPRLAPPQNVTLLSWDFSVYLTWL
                     PGPGNPQNMTYFVAYQSSATPKQWRRVKKCAGTKELQCSLMCLEKQDLCNKFKGRVRA
                     VSPRARSPWVESKSMDYFFEVEPAPPILVFTRTDEILSVNATYQLPHCMPQPDLSYEV
                     YFWKEGTGNEASFPATPHGQPVQISLQPDTSGHHCLSARTIYTFGSPKYSKFSEPTCF
                     FLEAPGSNWALLVLLPLLLPLLLVVATGPVIWKSFRGNPWFHQAKMPQALDLSGHRHP
                     GATFQPSGPECLHVLILCPQKEWTRRVRLTPRVRAPATVQAGSEDNAEEEEEADEEST
                     DDGVSFQPYTEPPPFLGQEHQSPGHAEVGGPWTPLVRVEDSSAYDSSDGSWASTAGSS
                     PWDEAGSSGYLAKKRPGRGPGGKELQKPLPPPEFSEDSSSLEEPPEDNPSSCVGWGLP
                     SPGLILVPREPPVSLQTLTFCWDSSPEEEEEGGGESESEDSSDSSCGAKSLQRIEVRG
                     RTLGHYLAR"
     misc_feature    61..372
                     /gene="IFNLR1"
                     /note="Tissue factor; Region: Tissue_fac; pfam01108"
                     /db_xref="CDD:460067"
     misc_feature    <499..690
                     /gene="IFNLR1"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; Region: Interfer-bind; cl46366"
                     /db_xref="CDD:480706"
     misc_feature    787..939
                     /gene="IFNLR1"
                     /note="JAK1 binding box domain found in interferon lambda
                     receptor 1 (IFNLR1), interleukin-10 receptor subunit alpha
                     (IL10RA) and similar proteins; Region:
                     JAK1bd_box_IFNLR1-like; cl45915"
                     /db_xref="CDD:459260"
     misc_feature    order(796..798,805..819,826..852,856..858,862..864,
                     868..882,886..888,892..897,901..927)
                     /gene="IFNLR1"
                     /note="JAK1 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:439313"
ORIGIN      
        1 ggagggacct ggtcccaccc tgggccacag aagaccggca tgaccggggc cccgcggtgg
       61 gcctcgttac tcctgtgcct gctgcagtcc acttcaggga ggccccgtct ggcccctccc
      121 cagaacgtga cgctgctctc ctgggacttc agtgtgtacc tgacgtggct cccaggacct
      181 ggcaaccccc agaacatgac ctattttgtg gcctatcaaa gctctgcaac ccccaaacag
      241 tggcggagag taaaaaagtg tgcaggaacc aaagagctac agtgttctct gatgtgcctg
      301 gagaaacaag acctgtgcaa taagttcaag gggcgtgtgc gagcagtttc tcccagagcc
      361 aggtcaccct gggtggagtc caagtccatg gattattttt ttgaagtgga gccagcccca
      421 cctatcctgg tattcacccg gacagacgag atcctgagtg tcaatgccac gtaccagctg
      481 ccccactgca tgccccaacc agatctgagc tatgaggtgt atttctggaa agagggtacc
      541 gggaatgagg ccagttttcc agccactccc catggccagc cagtccagat ttctctccaa
      601 ccagacacca gtggacacca ctgcctcagc gccagaacta tatacacctt tggctcccct
      661 aaatacagca agttctctga gcccacctgc ttcttcctgg aggccccagg atccaactgg
      721 gcactcctgg tactgctacc ccttctgctg ccactgctgt tggtcgttgc cacggggcct
      781 gtgatctgga agagcttcag ggggaacccc tggtttcatc aggcaaagat gccacaggcc
      841 ctggacctct ctggacacag acaccctggg gcaacctttc aacccagtgg cccagagtgc
      901 ctgcatgtct tgatcctctg tccccaaaag gaatggacca gaagggtcag gctgacccct
      961 agagtcaggg ccccagccac cgtccaggca ggatcagagg acaatgctga ggaggaggag
     1021 gaggctgacg aggagagcac ggacgacggt gtcagcttcc agccctacac tgaaccaccc
     1081 cccttcctgg ggcaggaaca ccagagcccg gggcatgctg aggtaggagg gccttggact
     1141 cctctggtcc gggtcgaaga ctcctctgct tacgattctt cagacggaag ctgggccagc
     1201 actgcgggct cctccccctg ggacgaggct ggatcatctg gctacttggc caagaagagg
     1261 ccaggccgag gaccgggtgg gaaggagctc cagaagcctc tcccaccacc cgaattctcc
     1321 gaggactcga gttccctgga agagccccca gaagacaacc cgtcctcctg cgtcggctgg
     1381 ggcttaccgt caccagggct gattctggtt cccagggagc ccccagtttc tcttcagaca
     1441 ctgaccttct gctgggacag cagccccgag gaagaagaag agggtggggg ggaatcagaa
     1501 agtgaggaca gcagtgacag cagctgcggg gctaagagcc tccagaggat tgaggtcaga
     1561 ggtaggacac tggggcacta cttggccagg tgagctgtcc ctcccagtct ggtgctactg
     1621 agctttctgg ggacccagca tgccaccgag acttgaaatc ctgggagcat catcgctggg
     1681 gcagccgcgg gttcttacgg cacctcgggg aacctggcta gaggtgtccg ccaggttgag
     1741 cagtcagaag ccatcccgtc ctatgacctt cgagctttgg gccgagagcc aagaggggtg
     1801 gagacaggga tgggcggagg tcagaggttg gttgggtgtc agaccacccc actgtccctg
     1861 gggtgacagg ccagttggaa aaatcatccc tgcacaacat gaaacaggcg aggtcaggtc
     1921 acaggggaca ttgaaggctg acagcacaag ggcccatctg gatttgggga gggaagaaat
     1981 ctggaggcac accaagtgta gcaggactca acgcctctct ccagcacccg ctgggctccc
     2041 tcctccccga ggctcggcat cctgatttat gagtccccta gggtgggccc cagtgaagaa
     2101 aaaatccagt tggctgaggg tgttggagag gaagaggaaa ggcatggtcc ttcaaatccc
     2161 agtctctgag tcaggcattg cacagtttcc attatcaaag aggcctgggt ccaaatccca
     2221 gctctgccat ttcccagttg tgtggcctta ggggagatac cttccttctc tgtacccgag
     2281 tctcctttct acagctacca cctggggcac ggtgagggtt ccgacagaga cgtgtgatgc
     2341 ctgccacacc actggcactc accacgtggt ggctggtagg attctccatc cacccaggct
     2401 ctgaggggac cgctgggcat ctcccacctg tgaccctaaa tccagagtga ctggagttcc
     2461 cacctttagt ctttctcctg cctcctgccc tcgctgaccc ctgccttctg gtcaggaaac
     2521 agttctcaga agctggagcc cagccaaggg tccctctccc ttttcccagc aaagaaaata
     2581 ccaaatggcc caccttctag ggggtctgat taattggtgg tggggtagca acccagcagg
     2641 gagtcggacc cctgggcccg tgatccccaa cttagcactt cagacccttt aggtgaccat
     2701 tgtggttgta aagatgtccc atttcctctt ccagttttga gaaaccactg tcttctggaa
     2761 acaggtgact gtccttacct gagggtagtg atggatgtgc tcacacaacc gctttattaa
     2821 cctacaccca ccagtatatg gacgagcaga gctgagtctt cacccgttag accaaggttt
     2881 tgtcagtttt gtggccctgc agggaccaca ggaatcagaa caatccttgg ctctgccatt
     2941 tcacctgcca ggacttaagt tcctccattt gtgtcaaaag cgtcttcata agcattttat
     3001 ccgcggggct gtgttgttgt gtgtttttgt tgttttttgt tttttgtttt tggctgtgtt
     3061 gttttgaagc caatgcgagg gtagaacatt aatggaagat ctggaaaagc agctcgaggg
     3121 catctggtcc gggggttctc aaactgtgtt cccaaaaggc cttgggcttc tcaggaggcg
     3181 tctcaatctc agggggagcc gtgggctgta ggatccccgc agtgcaacca gagcagcctc
     3241 cctgggccct gattttctcc agtggccctc cacgtaagat tgtacatagg agtttcaact
     3301 gctaaagaaa acgttagcaa accccttttt aaattgaaca cctgtctttt gtttcaaacg
     3361 aggaagctaa aatgttgact tactgtgtac gtctctgagg gtgacattgt cggtctctgg
     3421 ccagctgggc caacccccgt ccccttggcc atgtaaacag tactgaggtc tcggcaaggg
     3481 tttccaaggg gcacgaggct ggcaggaggc cttcaccact gctgggactc acacacatac
     3541 atgcatttct gcaggggttt ccctgcaatg aggcttgtct acatccgtga ttgagcacag
     3601 aagaggaaaa acaaactgga accatggagc tggggaaggc tgtggctcac ggccagttcc
     3661 agaccaagcc cagtgtcctt tctggaacca gccgagctgc ttcgtggaag taaattccaa
     3721 ataactaaaa gctatcctca ctattgtctt aggcttgtgt gaaggaaccg ctttatctct
     3781 gttctgaaaa cttgtgtgtt ttttaagcat ttttttaaag tttaatttct gacagacgct
     3841 gagctttcta ttaattctaa tagacgctga gctttctatt aattctaaac tccagctcct
     3901 ttatggtcat taagtcataa acaaaaaact gggcagcttt aggaaagagc atcctattca
     3961 atatcattca atatcatcat ttgtcaggtg tgctcagcac tgaactgttt acaaagccct
     4021 ttcatgtccc cagcaggcgg gaactgcata gtggaaactc cagggccacg catgaaagat
     4081 gtcaggggca gagcgggtga tgcctgggtg aaagcaacat tcccattctt tagggtagtg
     4141 aggagattat atattgttct aagatatttg tagttatttc taattttatg tttatgtcat
     4201 atttagataa tttcctaatg tttgttgggg cctaccccaa actgttttaa ataaagagct
     4261 ctatttttag agaaaagggc aaaattgaat ggaaa
//
LOCUS       XM_032610568            4254 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon lambda receptor 1 (IFNLR1),
            transcript variant X2, mRNA.
ACCESSION   XM_032610568
VERSION     XM_032610568.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4254
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4254
                     /gene="IFNLR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742717"
     CDS             86..1552
                     /gene="IFNLR1"
                     /codon_start=1
                     /product="interferon lambda receptor 1 isoform X2"
                     /protein_id="XP_032466459.1"
                     /db_xref="GeneID:116742717"
                     /translation="MISLLLSVTKRCSRLICTIPDLKPEISHISICSATPKQWRRVKK
                     CAGTKELQCSLMCLEKQDLCNKFKGRVRAVSPRARSPWVESKSMDYFFEVEPAPPILV
                     FTRTDEILSVNATYQLPHCMPQPDLSYEVYFWKEGTGNEASFPATPHGQPVQISLQPD
                     TSGHHCLSARTIYTFGSPKYSKFSEPTCFFLEAPGSNWALLVLLPLLLPLLLVVATGP
                     VIWKSFRGNPWFHQAKMPQALDLSGHRHPGATFQPSGPECLHVLILCPQKEWTRRVRL
                     TPRVRAPATVQAGSEDNAEEEEEADEESTDDGVSFQPYTEPPPFLGQEHQSPGHAEVG
                     GPWTPLVRVEDSSAYDSSDGSWASTAGSSPWDEAGSSGYLAKKRPGRGPGGKELQKPL
                     PPPEFSEDSSSLEEPPEDNPSSCVGWGLPSPGLILVPREPPVSLQTLTFCWDSSPEEE
                     EEGGGESESEDSSDSSCGAKSLQRIEVRGRTLGHYLAR"
     misc_feature    <188..331
                     /gene="IFNLR1"
                     /note="Tissue factor; Region: Tissue_fac; pfam01108"
                     /db_xref="CDD:460067"
     misc_feature    <458..649
                     /gene="IFNLR1"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; Region: Interfer-bind; cl46366"
                     /db_xref="CDD:480706"
     misc_feature    746..898
                     /gene="IFNLR1"
                     /note="JAK1 binding box domain found in interferon lambda
                     receptor 1 (IFNLR1), interleukin-10 receptor subunit alpha
                     (IL10RA) and similar proteins; Region:
                     JAK1bd_box_IFNLR1-like; cl45915"
                     /db_xref="CDD:459260"
     misc_feature    order(755..757,764..778,785..811,815..817,821..823,
                     827..841,845..847,851..856,860..886)
                     /gene="IFNLR1"
                     /note="JAK1 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:439313"
ORIGIN      
        1 ttgaagcttg aatggtctca tctttagtcc atgaatgtct cttcaggttg gctcctgagt
       61 cctttgaatt tgaccctagt aattcatgat atctttattg ctatctgtta cgaaaagatg
      121 ttccagactc atttgcacaa ttcctgacct aaaacctgaa atcagccaca tctccatttg
      181 ctctgcaacc cccaaacagt ggcggagagt aaaaaagtgt gcaggaacca aagagctaca
      241 gtgttctctg atgtgcctgg agaaacaaga cctgtgcaat aagttcaagg ggcgtgtgcg
      301 agcagtttct cccagagcca ggtcaccctg ggtggagtcc aagtccatgg attatttttt
      361 tgaagtggag ccagccccac ctatcctggt attcacccgg acagacgaga tcctgagtgt
      421 caatgccacg taccagctgc cccactgcat gccccaacca gatctgagct atgaggtgta
      481 tttctggaaa gagggtaccg ggaatgaggc cagttttcca gccactcccc atggccagcc
      541 agtccagatt tctctccaac cagacaccag tggacaccac tgcctcagcg ccagaactat
      601 atacaccttt ggctccccta aatacagcaa gttctctgag cccacctgct tcttcctgga
      661 ggccccagga tccaactggg cactcctggt actgctaccc cttctgctgc cactgctgtt
      721 ggtcgttgcc acggggcctg tgatctggaa gagcttcagg gggaacccct ggtttcatca
      781 ggcaaagatg ccacaggccc tggacctctc tggacacaga caccctgggg caacctttca
      841 acccagtggc ccagagtgcc tgcatgtctt gatcctctgt ccccaaaagg aatggaccag
      901 aagggtcagg ctgaccccta gagtcagggc cccagccacc gtccaggcag gatcagagga
      961 caatgctgag gaggaggagg aggctgacga ggagagcacg gacgacggtg tcagcttcca
     1021 gccctacact gaaccacccc ccttcctggg gcaggaacac cagagcccgg ggcatgctga
     1081 ggtaggaggg ccttggactc ctctggtccg ggtcgaagac tcctctgctt acgattcttc
     1141 agacggaagc tgggccagca ctgcgggctc ctccccctgg gacgaggctg gatcatctgg
     1201 ctacttggcc aagaagaggc caggccgagg accgggtggg aaggagctcc agaagcctct
     1261 cccaccaccc gaattctccg aggactcgag ttccctggaa gagcccccag aagacaaccc
     1321 gtcctcctgc gtcggctggg gcttaccgtc accagggctg attctggttc ccagggagcc
     1381 cccagtttct cttcagacac tgaccttctg ctgggacagc agccccgagg aagaagaaga
     1441 gggtgggggg gaatcagaaa gtgaggacag cagtgacagc agctgcgggg ctaagagcct
     1501 ccagaggatt gaggtcagag gtaggacact ggggcactac ttggccaggt gagctgtccc
     1561 tcccagtctg gtgctactga gctttctggg gacccagcat gccaccgaga cttgaaatcc
     1621 tgggagcatc atcgctgggg cagccgcggg ttcttacggc acctcgggga acctggctag
     1681 aggtgtccgc caggttgagc agtcagaagc catcccgtcc tatgaccttc gagctttggg
     1741 ccgagagcca agaggggtgg agacagggat gggcggaggt cagaggttgg ttgggtgtca
     1801 gaccacccca ctgtccctgg ggtgacaggc cagttggaaa aatcatccct gcacaacatg
     1861 aaacaggcga ggtcaggtca caggggacat tgaaggctga cagcacaagg gcccatctgg
     1921 atttggggag ggaagaaatc tggaggcaca ccaagtgtag caggactcaa cgcctctctc
     1981 cagcacccgc tgggctccct cctccccgag gctcggcatc ctgatttatg agtcccctag
     2041 ggtgggcccc agtgaagaaa aaatccagtt ggctgagggt gttggagagg aagaggaaag
     2101 gcatggtcct tcaaatccca gtctctgagt caggcattgc acagtttcca ttatcaaaga
     2161 ggcctgggtc caaatcccag ctctgccatt tcccagttgt gtggccttag gggagatacc
     2221 ttccttctct gtacccgagt ctcctttcta cagctaccac ctggggcacg gtgagggttc
     2281 cgacagagac gtgtgatgcc tgccacacca ctggcactca ccacgtggtg gctggtagga
     2341 ttctccatcc acccaggctc tgaggggacc gctgggcatc tcccacctgt gaccctaaat
     2401 ccagagtgac tggagttccc acctttagtc tttctcctgc ctcctgccct cgctgacccc
     2461 tgccttctgg tcaggaaaca gttctcagaa gctggagccc agccaagggt ccctctccct
     2521 tttcccagca aagaaaatac caaatggccc accttctagg gggtctgatt aattggtggt
     2581 ggggtagcaa cccagcaggg agtcggaccc ctgggcccgt gatccccaac ttagcacttc
     2641 agacccttta ggtgaccatt gtggttgtaa agatgtccca tttcctcttc cagttttgag
     2701 aaaccactgt cttctggaaa caggtgactg tccttacctg agggtagtga tggatgtgct
     2761 cacacaaccg ctttattaac ctacacccac cagtatatgg acgagcagag ctgagtcttc
     2821 acccgttaga ccaaggtttt gtcagttttg tggccctgca gggaccacag gaatcagaac
     2881 aatccttggc tctgccattt cacctgccag gacttaagtt cctccatttg tgtcaaaagc
     2941 gtcttcataa gcattttatc cgcggggctg tgttgttgtg tgtttttgtt gttttttgtt
     3001 ttttgttttt ggctgtgttg ttttgaagcc aatgcgaggg tagaacatta atggaagatc
     3061 tggaaaagca gctcgagggc atctggtccg ggggttctca aactgtgttc ccaaaaggcc
     3121 ttgggcttct caggaggcgt ctcaatctca gggggagccg tgggctgtag gatccccgca
     3181 gtgcaaccag agcagcctcc ctgggccctg attttctcca gtggccctcc acgtaagatt
     3241 gtacatagga gtttcaactg ctaaagaaaa cgttagcaaa ccccttttta aattgaacac
     3301 ctgtcttttg tttcaaacga ggaagctaaa atgttgactt actgtgtacg tctctgaggg
     3361 tgacattgtc ggtctctggc cagctgggcc aacccccgtc cccttggcca tgtaaacagt
     3421 actgaggtct cggcaagggt ttccaagggg cacgaggctg gcaggaggcc ttcaccactg
     3481 ctgggactca cacacataca tgcatttctg caggggtttc cctgcaatga ggcttgtcta
     3541 catccgtgat tgagcacaga agaggaaaaa caaactggaa ccatggagct ggggaaggct
     3601 gtggctcacg gccagttcca gaccaagccc agtgtccttt ctggaaccag ccgagctgct
     3661 tcgtggaagt aaattccaaa taactaaaag ctatcctcac tattgtctta ggcttgtgtg
     3721 aaggaaccgc tttatctctg ttctgaaaac ttgtgtgttt tttaagcatt tttttaaagt
     3781 ttaatttctg acagacgctg agctttctat taattctaat agacgctgag ctttctatta
     3841 attctaaact ccagctcctt tatggtcatt aagtcataaa caaaaaactg ggcagcttta
     3901 ggaaagagca tcctattcaa tatcattcaa tatcatcatt tgtcaggtgt gctcagcact
     3961 gaactgttta caaagccctt tcatgtcccc agcaggcggg aactgcatag tggaaactcc
     4021 agggccacgc atgaaagatg tcaggggcag agcgggtgat gcctgggtga aagcaacatt
     4081 cccattcttt agggtagtga ggagattata tattgttcta agatatttgt agttatttct
     4141 aattttatgt ttatgtcata tttagataat ttcctaatgt ttgttggggc ctaccccaaa
     4201 ctgttttaaa taaagagctc tatttttaga gaaaagggca aaattgaatg gaaa
//
LOCUS       XM_032610574            5174 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 2C (DENND2C),
            transcript variant X1, mRNA.
ACCESSION   XM_032610574
VERSION     XM_032610574.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5174
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5174
                     /gene="DENND2C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742727"
     CDS             314..3121
                     /gene="DENND2C"
                     /codon_start=1
                     /product="DENN domain-containing protein 2C"
                     /protein_id="XP_032466465.1"
                     /db_xref="GeneID:116742727"
                     /translation="MHPTGNMDVGFSRSAVQTLSRSHCKNIKQKISQWEGRTNGKSNP
                     DKCDPKDFGVRYNNCNQEILLKRNPVAEGKSKKLDVTNSQNVDQGINEDAKSHNRSED
                     ESEKREYDDTHFFKNESGSNWVCSRAKQTESWKEVLDPETSLPPGNFYTSQILWKKIE
                     AVPPDKVLNLALEHCDSSVKELNFRGLDRSYGVTKSLENIYSEPEGQECGPSINPLPK
                     PRRTFRYLSESGDMPYKERNCDRKYCENNSCTEPSLASSQEPEPKNYGRKIRGRSKRK
                     SFEFEDIQHFRNQNSRKIHEELRRNSGSALYYTQSEDNIYEDIIYPTKENPYEDIPVQ
                     PLPMWRSLSTWKLPPPKSAFKAHKLPPKPQLLHRKTMEPKNSQVYLWSKLTKDTTLPV
                     TLTEWKLFRAGEVAIRKRKNLPRLVLKIDDIFESKRGKKRVKLHPYTGKDVPPSKGET
                     CGYESDAEYLPKSRYKRIAQLQQPSKRNPHYQTLERDLIELQEQQLFELFVVVSLQKK
                     PSEISYIPQVIQQFPSKGDHGCKQSRDTEDRLKVIPKFCFPDSKDWVPTSELKSETFS
                     FVLTGEDGSRWFGYCKKLLPEGKGKRLPEVYCMVSRLGCFNLFSKILDEVEKRREMSP
                     ALVYPFMRSVMEAPFPAPGCTITVKSYLPGAGDGSIELCRPLDSRLEHVDFECLFKCL
                     SVCHLIRVCASLLLERRIIFVANSLSTLSKCGHAVVATLYPFTWQHTYIPVLPASMID
                     IVCSPTPFLIGILSCSLPQLQDLPIEEVLIVDLCADKFLQEVSDEDEILPPKLQAALI
                     QILEERNEILAQEQNFLQEDVTLNSLVSEAFVRFFVELVGHYSLSMTVTEHGERVFQR
                     EPFRKSHTSRSVRHFLDLFMETQMFAGFIQDRELRKSGVKGLFEVRALQYLETIPESE
                     PSGVNRILRTLGSKMKFLQKK"
     misc_feature    1790..2059
                     /gene="DENND2C"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    2087..2641
                     /gene="DENND2C"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2777..2977
                     /gene="DENND2C"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
ORIGIN      
        1 gggcctgtgg gggcgggacg gagccaaccc agagtgggag cgagccgact gggcgcttct
       61 gcgcggagga cgagagcttc ggagtccagc cgcggaggcg gcgtcgagga cgagagcaag
      121 taggggatta ttcaagataa agttgtagcc attttcaaca aggattgatg atcagaattt
      181 ttctttttaa aacattttca agttaaagat gaaaggaaaa cgctggaatt gtttgaattc
      241 taactgacag gataaagaat atagtatttc acagttactt gtaatggaac ctcagtaaaa
      301 ttcatcactt gtcatgcacc caactgggaa catggatgtt ggtttttctc gttctgctgt
      361 tcaaacactg tcaagaagcc actgcaaaaa catcaaacaa aaaatttctc agtgggaagg
      421 aagaactaat ggtaaatcta atccagataa gtgcgatcca aaggactttg gagtgagata
      481 taataactgt aatcaagaga ttcttcttaa gagaaatcct gttgctgagg gaaagagcaa
      541 aaagctggat gtcaccaact ctcaaaatgt tgatcagggt attaatgaag atgccaaaag
      601 ccacaatcga agtgaggatg aaagtgagaa acgtgaatat gatgatacac acttctttaa
      661 aaatgaatca ggatccaact gggtatgttc tcgggccaaa caaactgaaa gctggaaaga
      721 agttttggat ccagagactt cattacctcc aggaaatttc tatacctcac agatattgtg
      781 gaagaaaata gaagcagttc ccccagataa agtcttaaat ttagctttag aacattgtga
      841 ctcttcagta aaagaactga atttcagagg tctggatagg tcatatggag taacgaagag
      901 cttagaaaac atttactctg aacctgaggg acaagaatgt ggaccttcta taaatccttt
      961 gccaaaacct cgtaggacat tcagatattt atctgaatct ggtgatatgc catataaaga
     1021 aagaaactgt gacagaaaat actgtgaaaa taattcttgt acagagccct ctttagcctc
     1081 ttctcaggaa cctgaaccaa agaactatgg cagaaaaatc agagggagat ctaaaaggaa
     1141 atcctttgaa tttgaggaca ttcagcactt tcgaaatcag aactcacgga agattcatga
     1201 agaacttaga agaaattctg gctcagcact ttattacaca cagtctgagg acaatatcta
     1261 tgaggatatc atatatccca ccaaagaaaa tccatatgaa gatattccag tgcagccttt
     1321 gcccatgtgg aggtctcttt caacatggaa gctaccaccc cctaaaagtg ctttcaaagc
     1381 acacaagctt cctcccaaac ctcagttact tcaccggaag actatggaac cgaagaactc
     1441 acaagtttat ttatggtcaa agctcacaaa ggataccacg ttgcctgtca ctttaactga
     1501 atggaagctt ttccgagctg gagaagttgc aatcaggaaa aggaaaaatc ttccaaggct
     1561 tgtattgaaa atagatgata tatttgaatc taagagaggg aagaagaggg taaagttaca
     1621 cccttacact ggaaaagatg tacctccctc taaaggtgaa acctgtgggt atgaaagtga
     1681 tgccgagtat ctgccaaaga gtcgctacaa gcgcatagcg caactgcagc aaccttccaa
     1741 gaggaatcct cactaccaga ccttagagcg ggatctaatt gaattacagg agcagcagct
     1801 gtttgaactt tttgtggtgg tgtctctaca gaagaagcca tcagaaataa gctacattcc
     1861 ccaggtcata caacaattcc ctagcaaggg tgatcatggc tgtaagcaat ccagagacac
     1921 tgaagacagg ctcaaagtta tcccaaaatt ttgttttcct gattcaaagg actgggtgcc
     1981 aacctcagaa ctcaagagtg aaacgttctc ctttgtctta actggtgaag atgggagccg
     2041 gtggtttggt tactgtaaga agctcttgcc agaaggcaaa ggaaagcgac tccctgaggt
     2101 atactgcatg gtcagtcgcc taggctgctt caaccttttt tcaaagattc tggatgaagt
     2161 agagaagaga agagaaatgt ctccagcttt ggtttaccca tttatgcgaa gtgtcatgga
     2221 agctcctttc ccagctcctg gatgcaccat cacagtaaag agctacctcc ctggggctgg
     2281 agatgggtca attgaactat gccgaccact ggactcacga ttggaacatg ttgattttga
     2341 atgtctcttt aagtgcctga gtgtgtgcca tctcattcgg gtctgtgcct ctctcctttt
     2401 ggagcggagg ataatctttg ttgccaacag cctaagcacc ctgtcaaaat gtggccatgc
     2461 tgtggttgcc acactgtatc cattcacctg gcagcatacc tacatcccag tcctgccagc
     2521 atctatgatc gacattgtgt gctcacctac tcctttcctt attggaatcc tgtcttgctc
     2581 cttaccacag ctccaggacc tacccattga agaggtgctg atagttgatc tctgtgcaga
     2641 caagttctta caggaggtat ctgatgagga tgaaattcta ccacctaaac tccaggctgc
     2701 cctgatacaa attttggaag aacgaaacga aattttggct caggagcaga attttttaca
     2761 agaagatgtg acactcaact ctctggtgtc cgaagcattt gtcaggtttt ttgttgaact
     2821 ggtgggacat tattctttga gcatgactgt cactgagcat ggggagcgtg tattccaaag
     2881 ggagccattc cgtaaatccc acacctcccg aagtgtacgc cacttcctgg atctcttcat
     2941 ggaaactcag atgtttgcag gattcatcca ggaccgagag cttcggaaaa gtggggtgaa
     3001 aggtttgttt gaggtccggg ccctccagta tttggaaaca attcctgagt ctgagcccag
     3061 tggagtgaat agaattttgc ggactcttgg aagtaaaatg aaatttcttc agaagaaatg
     3121 aaatctttga ttgacagcct ccatcctaaa tagaacagaa agtgacaaac tatttttcca
     3181 agagtcaaga tgtcctgaag tattctacaa agtcttgaaa gttgaaaggt tacacagtgg
     3241 gccaggttct cggagcggga ttctcctgtt gctgctgtag taatcactgg agaattgttg
     3301 ggagtagtct ggatccaatg ctccctttac tctgcctcca gatttttttt aagtggcctt
     3361 tctttttgat tcttcagctc attctttgtg ttttgagctt agtctatgaa ggcgcttgtc
     3421 ttttacaaga aagaggtggt gttgcatttt aaaaacagct caaagatgag cacaatgaga
     3481 aaagtgctgc atttaaggta ctacggaggc atgatagaag tagaggacta gcccttcaca
     3541 cataattctc atcattgaaa taccatggca gctttaaacc tgtgggctgt ttgagctgag
     3601 ctaaggacta tactcgtctt ttgttttgtt tttttttttt ttttttggtc taatgatctg
     3661 tctaggggaa tctcacttat gtggaagccc tatgtattat cactgttatt gagtatctta
     3721 taaaaataga cattttatag cgcctcctcc acattgtgtg gcacttgggt agcttgtccc
     3781 acgcatgtca acattaaact ttggggaatt atagctaatg ggggacttcc ctggcagtcc
     3841 agtggttaag actccatgct tccactgcag ggggcacggg tttgatccct ggtccgagaa
     3901 ctaagatccc ccatgcgtat tccacatgcc gcatggcatg gccaaaaaca agaaaagaaa
     3961 aaaatatata cctaacagga aaatgtcctt taagggcatg agaactacct tcttttttag
     4021 tgtccaccat gtgccatgag tggtacatgt atgtatgtca tcttgtttag tctttaaatc
     4081 aactttatga gatatttgca tctgcatttt actaatgagg aaaatggagt tcagagttta
     4141 aataacttta aactgaagct aggactatta gtttatgaac acatagaaag ttcgttattc
     4201 ctacagatgg aaatttgaac tctgtgggac tatagttatt gaaaaagctt tttttttgtt
     4261 gtttttgttt tttaagctga agtgtaccag agtcaacttg cagctctgag aataagggac
     4321 ttcgaactat aggtgtccag atgagacttt ttttggttcc tctagaaatg ttggactttt
     4381 tgctctagtt aaattggact cagaatatgg acatttcctg ggcacacacc acataatcac
     4441 tccaacccat aatatctaaa gtagtagtag tggtatgaaa gaggaatttg tcagcattgg
     4501 tgtaacgcta attgataaat gttacagcaa gtatcagttt gttttcttca actcctgctg
     4561 atggctttaa ctgagataaa aaatattcaa acttaaagga ttataagttg tgttatgata
     4621 caacttatta acttgtgcag tattgtcatt acaacccatt caggtgtgcg tgaatggatc
     4681 tgaagcagac accatttaag atgggtgctg tataattcaa ttcctataga tgtgggccaa
     4741 gaaaatagaa ctaagcctat gttaaaaaaa aaaaaaaaag cttattaagc agcttacctc
     4801 agtggggctt ttaccagaca ttttcccatt tggtctcctc taacactccc accctgaggg
     4861 aacaattagt aactgggaat tgagtgttta taaaacgggg gtataaggtg ttactgtggt
     4921 ggatcccaga catccctctg tgaggagacc ttttcttcag ggatgggagt cttatccctg
     4981 cgatctgaag ctgcttcctt ttcttcagtc tgttttattt tttgtttgta aagtaataca
     5041 aattctggat acacttgtaa aataatcgct gaaaatttgt ataaaatgtt tacagatctt
     5101 ttaatgaata aacaaacaca aaaaattcca tggatcttct ggagaatttg aaataaaatt
     5161 gtttaagctg taaa
//
LOCUS       XM_032610584            5138 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 2C (DENND2C),
            transcript variant X2, mRNA.
ACCESSION   XM_032610584
VERSION     XM_032610584.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5138
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5138
                     /gene="DENND2C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 2 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116742727"
     CDS             278..3085
                     /gene="DENND2C"
                     /codon_start=1
                     /product="DENN domain-containing protein 2C"
                     /protein_id="XP_032466475.1"
                     /db_xref="GeneID:116742727"
                     /translation="MHPTGNMDVGFSRSAVQTLSRSHCKNIKQKISQWEGRTNGKSNP
                     DKCDPKDFGVRYNNCNQEILLKRNPVAEGKSKKLDVTNSQNVDQGINEDAKSHNRSED
                     ESEKREYDDTHFFKNESGSNWVCSRAKQTESWKEVLDPETSLPPGNFYTSQILWKKIE
                     AVPPDKVLNLALEHCDSSVKELNFRGLDRSYGVTKSLENIYSEPEGQECGPSINPLPK
                     PRRTFRYLSESGDMPYKERNCDRKYCENNSCTEPSLASSQEPEPKNYGRKIRGRSKRK
                     SFEFEDIQHFRNQNSRKIHEELRRNSGSALYYTQSEDNIYEDIIYPTKENPYEDIPVQ
                     PLPMWRSLSTWKLPPPKSAFKAHKLPPKPQLLHRKTMEPKNSQVYLWSKLTKDTTLPV
                     TLTEWKLFRAGEVAIRKRKNLPRLVLKIDDIFESKRGKKRVKLHPYTGKDVPPSKGET
                     CGYESDAEYLPKSRYKRIAQLQQPSKRNPHYQTLERDLIELQEQQLFELFVVVSLQKK
                     PSEISYIPQVIQQFPSKGDHGCKQSRDTEDRLKVIPKFCFPDSKDWVPTSELKSETFS
                     FVLTGEDGSRWFGYCKKLLPEGKGKRLPEVYCMVSRLGCFNLFSKILDEVEKRREMSP
                     ALVYPFMRSVMEAPFPAPGCTITVKSYLPGAGDGSIELCRPLDSRLEHVDFECLFKCL
                     SVCHLIRVCASLLLERRIIFVANSLSTLSKCGHAVVATLYPFTWQHTYIPVLPASMID
                     IVCSPTPFLIGILSCSLPQLQDLPIEEVLIVDLCADKFLQEVSDEDEILPPKLQAALI
                     QILEERNEILAQEQNFLQEDVTLNSLVSEAFVRFFVELVGHYSLSMTVTEHGERVFQR
                     EPFRKSHTSRSVRHFLDLFMETQMFAGFIQDRELRKSGVKGLFEVRALQYLETIPESE
                     PSGVNRILRTLGSKMKFLQKK"
     misc_feature    1754..2023
                     /gene="DENND2C"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    2051..2605
                     /gene="DENND2C"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2741..2941
                     /gene="DENND2C"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
ORIGIN      
        1 agagtgggag cgagccgact gggcgcttct gcgcggagga cgagagcttc ggagtccagc
       61 cgcggaggcg gcgtcgagga cgagagcaag attattcaag ataaagttgt agccattttc
      121 aacaaggatt gatgatcaga atttttcttt ttaaaacatt ttcaagttaa agatgaaagg
      181 aaaacgctgg aattgtttga attctaactg acaggataaa gaatatagta tttcacagtt
      241 acttgtaatg gaacctcagt aaaattcatc acttgtcatg cacccaactg ggaacatgga
      301 tgttggtttt tctcgttctg ctgttcaaac actgtcaaga agccactgca aaaacatcaa
      361 acaaaaaatt tctcagtggg aaggaagaac taatggtaaa tctaatccag ataagtgcga
      421 tccaaaggac tttggagtga gatataataa ctgtaatcaa gagattcttc ttaagagaaa
      481 tcctgttgct gagggaaaga gcaaaaagct ggatgtcacc aactctcaaa atgttgatca
      541 gggtattaat gaagatgcca aaagccacaa tcgaagtgag gatgaaagtg agaaacgtga
      601 atatgatgat acacacttct ttaaaaatga atcaggatcc aactgggtat gttctcgggc
      661 caaacaaact gaaagctgga aagaagtttt ggatccagag acttcattac ctccaggaaa
      721 tttctatacc tcacagatat tgtggaagaa aatagaagca gttcccccag ataaagtctt
      781 aaatttagct ttagaacatt gtgactcttc agtaaaagaa ctgaatttca gaggtctgga
      841 taggtcatat ggagtaacga agagcttaga aaacatttac tctgaacctg agggacaaga
      901 atgtggacct tctataaatc ctttgccaaa acctcgtagg acattcagat atttatctga
      961 atctggtgat atgccatata aagaaagaaa ctgtgacaga aaatactgtg aaaataattc
     1021 ttgtacagag ccctctttag cctcttctca ggaacctgaa ccaaagaact atggcagaaa
     1081 aatcagaggg agatctaaaa ggaaatcctt tgaatttgag gacattcagc actttcgaaa
     1141 tcagaactca cggaagattc atgaagaact tagaagaaat tctggctcag cactttatta
     1201 cacacagtct gaggacaata tctatgagga tatcatatat cccaccaaag aaaatccata
     1261 tgaagatatt ccagtgcagc ctttgcccat gtggaggtct ctttcaacat ggaagctacc
     1321 accccctaaa agtgctttca aagcacacaa gcttcctccc aaacctcagt tacttcaccg
     1381 gaagactatg gaaccgaaga actcacaagt ttatttatgg tcaaagctca caaaggatac
     1441 cacgttgcct gtcactttaa ctgaatggaa gcttttccga gctggagaag ttgcaatcag
     1501 gaaaaggaaa aatcttccaa ggcttgtatt gaaaatagat gatatatttg aatctaagag
     1561 agggaagaag agggtaaagt tacaccctta cactggaaaa gatgtacctc cctctaaagg
     1621 tgaaacctgt gggtatgaaa gtgatgccga gtatctgcca aagagtcgct acaagcgcat
     1681 agcgcaactg cagcaacctt ccaagaggaa tcctcactac cagaccttag agcgggatct
     1741 aattgaatta caggagcagc agctgtttga actttttgtg gtggtgtctc tacagaagaa
     1801 gccatcagaa ataagctaca ttccccaggt catacaacaa ttccctagca agggtgatca
     1861 tggctgtaag caatccagag acactgaaga caggctcaaa gttatcccaa aattttgttt
     1921 tcctgattca aaggactggg tgccaacctc agaactcaag agtgaaacgt tctcctttgt
     1981 cttaactggt gaagatggga gccggtggtt tggttactgt aagaagctct tgccagaagg
     2041 caaaggaaag cgactccctg aggtatactg catggtcagt cgcctaggct gcttcaacct
     2101 tttttcaaag attctggatg aagtagagaa gagaagagaa atgtctccag ctttggttta
     2161 cccatttatg cgaagtgtca tggaagctcc tttcccagct cctggatgca ccatcacagt
     2221 aaagagctac ctccctgggg ctggagatgg gtcaattgaa ctatgccgac cactggactc
     2281 acgattggaa catgttgatt ttgaatgtct ctttaagtgc ctgagtgtgt gccatctcat
     2341 tcgggtctgt gcctctctcc ttttggagcg gaggataatc tttgttgcca acagcctaag
     2401 caccctgtca aaatgtggcc atgctgtggt tgccacactg tatccattca cctggcagca
     2461 tacctacatc ccagtcctgc cagcatctat gatcgacatt gtgtgctcac ctactccttt
     2521 ccttattgga atcctgtctt gctccttacc acagctccag gacctaccca ttgaagaggt
     2581 gctgatagtt gatctctgtg cagacaagtt cttacaggag gtatctgatg aggatgaaat
     2641 tctaccacct aaactccagg ctgccctgat acaaattttg gaagaacgaa acgaaatttt
     2701 ggctcaggag cagaattttt tacaagaaga tgtgacactc aactctctgg tgtccgaagc
     2761 atttgtcagg ttttttgttg aactggtggg acattattct ttgagcatga ctgtcactga
     2821 gcatggggag cgtgtattcc aaagggagcc attccgtaaa tcccacacct cccgaagtgt
     2881 acgccacttc ctggatctct tcatggaaac tcagatgttt gcaggattca tccaggaccg
     2941 agagcttcgg aaaagtgggg tgaaaggttt gtttgaggtc cgggccctcc agtatttgga
     3001 aacaattcct gagtctgagc ccagtggagt gaatagaatt ttgcggactc ttggaagtaa
     3061 aatgaaattt cttcagaaga aatgaaatct ttgattgaca gcctccatcc taaatagaac
     3121 agaaagtgac aaactatttt tccaagagtc aagatgtcct gaagtattct acaaagtctt
     3181 gaaagttgaa aggttacaca gtgggccagg ttctcggagc gggattctcc tgttgctgct
     3241 gtagtaatca ctggagaatt gttgggagta gtctggatcc aatgctccct ttactctgcc
     3301 tccagatttt ttttaagtgg cctttctttt tgattcttca gctcattctt tgtgttttga
     3361 gcttagtcta tgaaggcgct tgtcttttac aagaaagagg tggtgttgca ttttaaaaac
     3421 agctcaaaga tgagcacaat gagaaaagtg ctgcatttaa ggtactacgg aggcatgata
     3481 gaagtagagg actagccctt cacacataat tctcatcatt gaaataccat ggcagcttta
     3541 aacctgtggg ctgtttgagc tgagctaagg actatactcg tcttttgttt tgtttttttt
     3601 tttttttttt ggtctaatga tctgtctagg ggaatctcac ttatgtggaa gccctatgta
     3661 ttatcactgt tattgagtat cttataaaaa tagacatttt atagcgcctc ctccacattg
     3721 tgtggcactt gggtagcttg tcccacgcat gtcaacatta aactttgggg aattatagct
     3781 aatgggggac ttccctggca gtccagtggt taagactcca tgcttccact gcagggggca
     3841 cgggtttgat ccctggtccg agaactaaga tcccccatgc gtattccaca tgccgcatgg
     3901 catggccaaa aacaagaaaa gaaaaaaata tatacctaac aggaaaatgt cctttaaggg
     3961 catgagaact accttctttt ttagtgtcca ccatgtgcca tgagtggtac atgtatgtat
     4021 gtcatcttgt ttagtcttta aatcaacttt atgagatatt tgcatctgca ttttactaat
     4081 gaggaaaatg gagttcagag tttaaataac tttaaactga agctaggact attagtttat
     4141 gaacacatag aaagttcgtt attcctacag atggaaattt gaactctgtg ggactatagt
     4201 tattgaaaaa gctttttttt tgttgttttt gttttttaag ctgaagtgta ccagagtcaa
     4261 cttgcagctc tgagaataag ggacttcgaa ctataggtgt ccagatgaga ctttttttgg
     4321 ttcctctaga aatgttggac tttttgctct agttaaattg gactcagaat atggacattt
     4381 cctgggcaca caccacataa tcactccaac ccataatatc taaagtagta gtagtggtat
     4441 gaaagaggaa tttgtcagca ttggtgtaac gctaattgat aaatgttaca gcaagtatca
     4501 gtttgttttc ttcaactcct gctgatggct ttaactgaga taaaaaatat tcaaacttaa
     4561 aggattataa gttgtgttat gatacaactt attaacttgt gcagtattgt cattacaacc
     4621 cattcaggtg tgcgtgaatg gatctgaagc agacaccatt taagatgggt gctgtataat
     4681 tcaattccta tagatgtggg ccaagaaaat agaactaagc ctatgttaaa aaaaaaaaaa
     4741 aaagcttatt aagcagctta cctcagtggg gcttttacca gacattttcc catttggtct
     4801 cctctaacac tcccaccctg agggaacaat tagtaactgg gaattgagtg tttataaaac
     4861 gggggtataa ggtgttactg tggtggatcc cagacatccc tctgtgagga gaccttttct
     4921 tcagggatgg gagtcttatc cctgcgatct gaagctgctt ccttttcttc agtctgtttt
     4981 attttttgtt tgtaaagtaa tacaaattct ggatacactt gtaaaataat cgctgaaaat
     5041 ttgtataaaa tgtttacaga tcttttaatg aataaacaaa cacaaaaaat tccatggatc
     5101 ttctggagaa tttgaaataa aattgtttaa gctgtaaa
//
LOCUS       XM_032610593            3621 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SWT1 RNA endoribonuclease homolog (SWT1),
            transcript variant X1, mRNA.
ACCESSION   XM_032610593
VERSION     XM_032610593.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3621
                     /gene="SWT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742739"
     CDS             64..2781
                     /gene="SWT1"
                     /codon_start=1
                     /product="transcriptional protein SWT1 isoform X1"
                     /protein_id="XP_032466484.1"
                     /db_xref="GeneID:116742739"
                     /translation="MSSKESYGKKEKSLRKGTAPSPNVDEEDKKEKKTSANSTSSPCS
                     VISVSTEKRKLKSDDTDILYCNVKRRQELKRLNVETDTPRKRPKISSSCQGLVKLQET
                     SYSNDNHIISQSPSSNGTKKGISKCVDFKVKDIKLTNVKSELDRGIKNFSSPKIAKDV
                     RPKAEGQASEKKWPHLLAQREKMKELKKERYNKFRDSSEKYVLEKCKRIQFSQDYKSN
                     KIIKEPLESRRRMINFKILGESRETLQKLVEEDVFSLDSNTLKTKQEKKECLEGSQFS
                     LNLTRHKSEHLFSDSTYKQTVREWEGKYHEHQRSNDSSSSENLTKSFEAPCSSVSLES
                     IQDTDQEMQIVEELHAARVGKSVDLPVVPPSGELTSMEIDLVEDDVHSSSANTASDKK
                     LLIVVDTNILMNHLKFVRILKTTEISGFDRLVLIIPWVVVQELDRMKAGKLLKHAQHK
                     AVPAVHFIHDSLKNQDRKLWGQSIQLASQKLYGLSDENNDDRVLKCCLQYQELFPCSL
                     VILCTDDRNLRNKGLISGVKSLSKEELSAELLNLSLNTVVCHQPCISKQQLKAEATPL
                     EKSCEEESTNSGLCIPLESIVSDLEKSLGTALSSILETEMKIAFGNLWMEVLYLKPPW
                     TLIHLLQCFRKHWLAVFGLVVEKNLLLTVESLYENLSKANSAVDFTTVKLLLQDSKSL
                     LHAFSTRSNYDGILPQAFAQVNKLLQTFIEVKAKLKQNPSKNTAGKRQEDNSLMKSNN
                     QEITISSGSHLPQPNRHQEMWSILENVWITIYQNSMDVFQRLGSNSALMSSKIASFEE
                     AFVYLQKLMEAVKVILEGIQRILAPNSNYQDVETLYNFLIKYEVNKNVKFTAQELYDC
                     VSQAEYREKLTIGCRQLVEMEHTMQQCNASVYMEAKKRGWCEDMLNYRT"
     misc_feature    1249..1674
                     /gene="SWT1"
                     /note="VapC-like PIN domain of Saccharomyces cerevisiae
                     Swt1p, human SWT1 and related proteins; Region:
                     PIN_Swt1-like; cd18727"
                     /db_xref="CDD:350294"
ORIGIN      
        1 ttcccttggc ccgggcgtcc cgagtcgcca ccggcgggag cgctggtgaa taagcttttc
       61 aaaatgtcca gcaaagaatc ttatggaaaa aaagagaaat ctctgagaaa aggcactgcc
      121 ccatcaccca atgttgatga agaagataag aaagagaaaa aaacctcagc aaattctact
      181 agttcacctt gttctgtaat atcagtttca acagagaaga gaaaactgaa atcagatgat
      241 acagatattc tgtactgtaa tgtaaaaaga agacaagaac tgaaaagact gaatgtagaa
      301 actgacactc caagaaagag accaaaaatt agttcttcat gccaaggact tgttaaactc
      361 caagaaacat catactcaaa tgataatcat attatttctc agagtccttc ttcaaatgga
      421 actaaaaaag gtataagtaa atgtgtagat tttaaagtta aagatattaa attgacaaat
      481 gttaagagtg agctggaccg tggaattaaa aactttagca gtcctaagat tgccaaagat
      541 gtgagaccta aagctgaagg tcaggcaagt gaaaaaaaat ggcctcatct acttgctcag
      601 agggagaaga tgaaggaact caagaaagaa aggtacaata aatttagaga cagttctgaa
      661 aaatatgttt tggagaaatg caagagaatc caattttctc aggattataa gtccaacaag
      721 ataattaagg aacccctcga atctagaaga agaatgatca atttcaaaat cctaggagaa
      781 tcccgtgaaa cccttcagaa gcttgtagaa gaagatgtct tcagtttaga ttctaacacg
      841 ttgaagacca agcaggagaa aaaagaatgc ctggaaggct cccagttttc gttaaatttg
      901 acaaggcaca aaagtgaaca tttattttca gattccacgt ataagcagac tgttcgtgag
      961 tgggaaggaa aatatcatga gcatcaaaga agtaatgatt caagttctag tgaaaaccta
     1021 accaagagtt ttgaagcacc atgttcttca gtgtcacttg aaagtattca agatacagat
     1081 caagagatgc agattgtaga agagcttcac gctgcacgtg tgggaaaaag tgtggattta
     1141 cctgtggttc caccttctgg agagttaaca agtatggaga ttgacttggt ggaagatgat
     1201 gtacattcct cttctgcaaa tactgcttca gacaaaaagc ttttaattgt tgttgacaca
     1261 aatatactga tgaatcatct caaatttgtt agaattttga agacaacaga aatctcaggc
     1321 tttgacaggc ttgtgttaat aattccctgg gttgttgtgc aagagctgga tcgtatgaag
     1381 gcaggaaaat tactgaaaca tgcccagcac aaagctgtac ctgccgttca tttcatccat
     1441 gacagtctca aaaatcaaga tagaaagcta tggggtcagt caatacaact tgcatctcaa
     1501 aaactttatg gattgagcga tgagaacaat gatgaccgtg tattaaaatg ctgtcttcag
     1561 taccaagaat tattcccttg ttctcttgtt attttgtgca cggatgatag aaatttaaga
     1621 aacaaaggcc taataagtgg tgtgaagtca ctcagtaaag aagaattgag tgcagaatta
     1681 ttaaacttat ctctgaacac agttgtatgt catcagcctt gtatatctaa acaacaattg
     1741 aaagcagaag caacaccttt agagaagagc tgtgaggagg aatctacaaa ctctggactg
     1801 tgcattccac ttgaaagcat tgtatctgat ctcgaaaaat ctcttggcac agctttatct
     1861 tcaatattag aaacagaaat gaaaattgcg tttggaaacc tttggatgga ggtgctgtac
     1921 ttgaaaccac catggactct aatacattta ttacagtgct ttagaaagca ttggttggct
     1981 gtatttggat tagttgtgga aaagaacttg cttttaactg ttgagagcct atatgaaaat
     2041 ctctctaaag ctaacagcgc agtggatttt acaacagtga aattgctgct tcaggattct
     2101 aaaagtttgc tacatgcttt cagtacaagg tcaaattatg atggtattct tccacaggcc
     2161 tttgctcaag taaacaaact actccaaaca tttatagagg tcaaggcaaa acttaagcaa
     2221 aatccttcaa aaaatacagc gggtaaaagg caagaagata attctttgat gaaatctaat
     2281 aaccaagaaa tcaccatttc ctcaggttct catcttcccc aacccaacag gcatcaagag
     2341 atgtggtcta tcctagagaa tgtttggatt acaatatatc aaaacagcat ggatgtgttt
     2401 caaagattgg gctcaaattc agctctgatg tcttcaaaaa tagcatcatt tgaagaagca
     2461 tttgtatatc ttcaaaagtt aatggaagct gttaaggtta ttcttgaagg aattcagagg
     2521 attttggcac ccaatagtaa ttatcaagat gttgagaccc tctataactt cctaatcaag
     2581 tatgaggtaa ataaaaatgt caaatttact gcccaggaac tttatgattg tgtttcacag
     2641 gctgagtatc gggaaaagtt aaccatcgga tgccgccaac tggttgagat ggaacatacc
     2701 atgcaacagt gcaatgcctc cgtctatatg gaggccaaaa agaggggatg gtgtgaagac
     2761 atgctcaact atagaaccta agtgctgatt ttgtaactta gaaggaactg catctatctt
     2821 caggaacaag agtagctttc aaccttttgt gccaaacccg ggagacttgc aagaaatgtc
     2881 ttaagaaatg tctcaaatgt caatgtctca taagtacaaa aagataattg cctattactg
     2941 acaatctcat tgaggttcta atgtgtccat tgtgggataa actgtgaact caacttgtct
     3001 gaagttgact ttacctccct acctctactc ctaatactga gccagtgtgt ctaaggaaag
     3061 gagagccatc tttttggtca tcttagggca agagccactg cggcatctga ggaaggccca
     3121 ggacacagtg ttagcatctc tctcaacaat aaatatgggt atgtgaccag agacgtttcc
     3181 agacctcaag aaagaattag gacatgacca tgctcaccat attccacaag agaaatctta
     3241 ccctgggctg ttttatgatc aaactgtctt ccatgtagac acaatacata atacgtatcc
     3301 cttctacttc ccccaaggta agggaagtag aattttgact tgggctccaa cttgctgcag
     3361 tagcctcttt tcttccctgg ccttgtcact tctcagtgca tttctcatgg gataaacagg
     3421 gagacccctc tgctcagtgt cctcttaaat gtgaaacagc atggatttat caggtagcag
     3481 tggctgatgt ttgcccctgg ctaaaccaag tgtttaactg acttcttctt tagttataaa
     3541 taccatctat ggaaatcctt gtttactaaa gtatattatg cttttgttaa tacattagat
     3601 taaatctaat ttggtactct a
//
LOCUS       XM_032610598            4160 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SWT1 RNA endoribonuclease homolog (SWT1),
            transcript variant X2, mRNA.
ACCESSION   XM_032610598
VERSION     XM_032610598.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4160
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4160
                     /gene="SWT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742739"
     CDS             603..3320
                     /gene="SWT1"
                     /codon_start=1
                     /product="transcriptional protein SWT1 isoform X1"
                     /protein_id="XP_032466489.1"
                     /db_xref="GeneID:116742739"
                     /translation="MSSKESYGKKEKSLRKGTAPSPNVDEEDKKEKKTSANSTSSPCS
                     VISVSTEKRKLKSDDTDILYCNVKRRQELKRLNVETDTPRKRPKISSSCQGLVKLQET
                     SYSNDNHIISQSPSSNGTKKGISKCVDFKVKDIKLTNVKSELDRGIKNFSSPKIAKDV
                     RPKAEGQASEKKWPHLLAQREKMKELKKERYNKFRDSSEKYVLEKCKRIQFSQDYKSN
                     KIIKEPLESRRRMINFKILGESRETLQKLVEEDVFSLDSNTLKTKQEKKECLEGSQFS
                     LNLTRHKSEHLFSDSTYKQTVREWEGKYHEHQRSNDSSSSENLTKSFEAPCSSVSLES
                     IQDTDQEMQIVEELHAARVGKSVDLPVVPPSGELTSMEIDLVEDDVHSSSANTASDKK
                     LLIVVDTNILMNHLKFVRILKTTEISGFDRLVLIIPWVVVQELDRMKAGKLLKHAQHK
                     AVPAVHFIHDSLKNQDRKLWGQSIQLASQKLYGLSDENNDDRVLKCCLQYQELFPCSL
                     VILCTDDRNLRNKGLISGVKSLSKEELSAELLNLSLNTVVCHQPCISKQQLKAEATPL
                     EKSCEEESTNSGLCIPLESIVSDLEKSLGTALSSILETEMKIAFGNLWMEVLYLKPPW
                     TLIHLLQCFRKHWLAVFGLVVEKNLLLTVESLYENLSKANSAVDFTTVKLLLQDSKSL
                     LHAFSTRSNYDGILPQAFAQVNKLLQTFIEVKAKLKQNPSKNTAGKRQEDNSLMKSNN
                     QEITISSGSHLPQPNRHQEMWSILENVWITIYQNSMDVFQRLGSNSALMSSKIASFEE
                     AFVYLQKLMEAVKVILEGIQRILAPNSNYQDVETLYNFLIKYEVNKNVKFTAQELYDC
                     VSQAEYREKLTIGCRQLVEMEHTMQQCNASVYMEAKKRGWCEDMLNYRT"
     misc_feature    1788..2213
                     /gene="SWT1"
                     /note="VapC-like PIN domain of Saccharomyces cerevisiae
                     Swt1p, human SWT1 and related proteins; Region:
                     PIN_Swt1-like; cd18727"
                     /db_xref="CDD:350294"
ORIGIN      
        1 actccggtac cgtagcgggc ggccggcggg acggacgggg gattccctgt cccttcgagc
       61 ctgggctggg cgactctggg ggcgggcccg gggttgagcc tgctctatgg agggtggggt
      121 tctggcccgg cccttcctct ggggctgccc ctcgccccgg ctagggtgaa gtctgttagt
      181 acgcgaaccc gtgggcctag gcggtttaca ggacgctgac aggctcgcct gtcagtcggg
      241 tgtctgctcc ttatttcgca ccttcacgca caccgtgacc cgaacacttt tccttttgtt
      301 tttatttttg ccctaaccta cgtattccca gtatcagcgc tgcgccgtgg ctgtaagatt
      361 cctacggata gggaatttgg cgggatgggg gcggggggag tgccctgtgc ttatatttag
      421 gctgttaata cccaaagctc gttaatatgt tgagcttcgg ggcacttgac tgatgcgatt
      481 cacgttcctc aagtcgtatg caagtgagtt ccccggcccc cgtccttctc ttgcctttac
      541 tctctgagac atcctgaaga aggtatcttc agagtttgga agaatcatat taacttttca
      601 aaatgtccag caaagaatct tatggaaaaa aagagaaatc tctgagaaaa ggcactgccc
      661 catcacccaa tgttgatgaa gaagataaga aagagaaaaa aacctcagca aattctacta
      721 gttcaccttg ttctgtaata tcagtttcaa cagagaagag aaaactgaaa tcagatgata
      781 cagatattct gtactgtaat gtaaaaagaa gacaagaact gaaaagactg aatgtagaaa
      841 ctgacactcc aagaaagaga ccaaaaatta gttcttcatg ccaaggactt gttaaactcc
      901 aagaaacatc atactcaaat gataatcata ttatttctca gagtccttct tcaaatggaa
      961 ctaaaaaagg tataagtaaa tgtgtagatt ttaaagttaa agatattaaa ttgacaaatg
     1021 ttaagagtga gctggaccgt ggaattaaaa actttagcag tcctaagatt gccaaagatg
     1081 tgagacctaa agctgaaggt caggcaagtg aaaaaaaatg gcctcatcta cttgctcaga
     1141 gggagaagat gaaggaactc aagaaagaaa ggtacaataa atttagagac agttctgaaa
     1201 aatatgtttt ggagaaatgc aagagaatcc aattttctca ggattataag tccaacaaga
     1261 taattaagga acccctcgaa tctagaagaa gaatgatcaa tttcaaaatc ctaggagaat
     1321 cccgtgaaac ccttcagaag cttgtagaag aagatgtctt cagtttagat tctaacacgt
     1381 tgaagaccaa gcaggagaaa aaagaatgcc tggaaggctc ccagttttcg ttaaatttga
     1441 caaggcacaa aagtgaacat ttattttcag attccacgta taagcagact gttcgtgagt
     1501 gggaaggaaa atatcatgag catcaaagaa gtaatgattc aagttctagt gaaaacctaa
     1561 ccaagagttt tgaagcacca tgttcttcag tgtcacttga aagtattcaa gatacagatc
     1621 aagagatgca gattgtagaa gagcttcacg ctgcacgtgt gggaaaaagt gtggatttac
     1681 ctgtggttcc accttctgga gagttaacaa gtatggagat tgacttggtg gaagatgatg
     1741 tacattcctc ttctgcaaat actgcttcag acaaaaagct tttaattgtt gttgacacaa
     1801 atatactgat gaatcatctc aaatttgtta gaattttgaa gacaacagaa atctcaggct
     1861 ttgacaggct tgtgttaata attccctggg ttgttgtgca agagctggat cgtatgaagg
     1921 caggaaaatt actgaaacat gcccagcaca aagctgtacc tgccgttcat ttcatccatg
     1981 acagtctcaa aaatcaagat agaaagctat ggggtcagtc aatacaactt gcatctcaaa
     2041 aactttatgg attgagcgat gagaacaatg atgaccgtgt attaaaatgc tgtcttcagt
     2101 accaagaatt attcccttgt tctcttgtta ttttgtgcac ggatgataga aatttaagaa
     2161 acaaaggcct aataagtggt gtgaagtcac tcagtaaaga agaattgagt gcagaattat
     2221 taaacttatc tctgaacaca gttgtatgtc atcagccttg tatatctaaa caacaattga
     2281 aagcagaagc aacaccttta gagaagagct gtgaggagga atctacaaac tctggactgt
     2341 gcattccact tgaaagcatt gtatctgatc tcgaaaaatc tcttggcaca gctttatctt
     2401 caatattaga aacagaaatg aaaattgcgt ttggaaacct ttggatggag gtgctgtact
     2461 tgaaaccacc atggactcta atacatttat tacagtgctt tagaaagcat tggttggctg
     2521 tatttggatt agttgtggaa aagaacttgc ttttaactgt tgagagccta tatgaaaatc
     2581 tctctaaagc taacagcgca gtggatttta caacagtgaa attgctgctt caggattcta
     2641 aaagtttgct acatgctttc agtacaaggt caaattatga tggtattctt ccacaggcct
     2701 ttgctcaagt aaacaaacta ctccaaacat ttatagaggt caaggcaaaa cttaagcaaa
     2761 atccttcaaa aaatacagcg ggtaaaaggc aagaagataa ttctttgatg aaatctaata
     2821 accaagaaat caccatttcc tcaggttctc atcttcccca acccaacagg catcaagaga
     2881 tgtggtctat cctagagaat gtttggatta caatatatca aaacagcatg gatgtgtttc
     2941 aaagattggg ctcaaattca gctctgatgt cttcaaaaat agcatcattt gaagaagcat
     3001 ttgtatatct tcaaaagtta atggaagctg ttaaggttat tcttgaagga attcagagga
     3061 ttttggcacc caatagtaat tatcaagatg ttgagaccct ctataacttc ctaatcaagt
     3121 atgaggtaaa taaaaatgtc aaatttactg cccaggaact ttatgattgt gtttcacagg
     3181 ctgagtatcg ggaaaagtta accatcggat gccgccaact ggttgagatg gaacatacca
     3241 tgcaacagtg caatgcctcc gtctatatgg aggccaaaaa gaggggatgg tgtgaagaca
     3301 tgctcaacta tagaacctaa gtgctgattt tgtaacttag aaggaactgc atctatcttc
     3361 aggaacaaga gtagctttca accttttgtg ccaaacccgg gagacttgca agaaatgtct
     3421 taagaaatgt ctcaaatgtc aatgtctcat aagtacaaaa agataattgc ctattactga
     3481 caatctcatt gaggttctaa tgtgtccatt gtgggataaa ctgtgaactc aacttgtctg
     3541 aagttgactt tacctcccta cctctactcc taatactgag ccagtgtgtc taaggaaagg
     3601 agagccatct ttttggtcat cttagggcaa gagccactgc ggcatctgag gaaggcccag
     3661 gacacagtgt tagcatctct ctcaacaata aatatgggta tgtgaccaga gacgtttcca
     3721 gacctcaaga aagaattagg acatgaccat gctcaccata ttccacaaga gaaatcttac
     3781 cctgggctgt tttatgatca aactgtcttc catgtagaca caatacataa tacgtatccc
     3841 ttctacttcc cccaaggtaa gggaagtaga attttgactt gggctccaac ttgctgcagt
     3901 agcctctttt cttccctggc cttgtcactt ctcagtgcat ttctcatggg ataaacaggg
     3961 agacccctct gctcagtgtc ctcttaaatg tgaaacagca tggatttatc aggtagcagt
     4021 ggctgatgtt tgcccctggc taaaccaagt gtttaactga cttcttcttt agttataaat
     4081 accatctatg gaaatccttg tttactaaag tatattatgc ttttgttaat acattagatt
     4141 aaatctaatt tggtactcta
//
LOCUS       XM_032610606            4280 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SWT1 RNA endoribonuclease homolog (SWT1),
            transcript variant X3, mRNA.
ACCESSION   XM_032610606
VERSION     XM_032610606.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4280
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4280
                     /gene="SWT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742739"
     CDS             723..3440
                     /gene="SWT1"
                     /codon_start=1
                     /product="transcriptional protein SWT1 isoform X1"
                     /protein_id="XP_032466497.1"
                     /db_xref="GeneID:116742739"
                     /translation="MSSKESYGKKEKSLRKGTAPSPNVDEEDKKEKKTSANSTSSPCS
                     VISVSTEKRKLKSDDTDILYCNVKRRQELKRLNVETDTPRKRPKISSSCQGLVKLQET
                     SYSNDNHIISQSPSSNGTKKGISKCVDFKVKDIKLTNVKSELDRGIKNFSSPKIAKDV
                     RPKAEGQASEKKWPHLLAQREKMKELKKERYNKFRDSSEKYVLEKCKRIQFSQDYKSN
                     KIIKEPLESRRRMINFKILGESRETLQKLVEEDVFSLDSNTLKTKQEKKECLEGSQFS
                     LNLTRHKSEHLFSDSTYKQTVREWEGKYHEHQRSNDSSSSENLTKSFEAPCSSVSLES
                     IQDTDQEMQIVEELHAARVGKSVDLPVVPPSGELTSMEIDLVEDDVHSSSANTASDKK
                     LLIVVDTNILMNHLKFVRILKTTEISGFDRLVLIIPWVVVQELDRMKAGKLLKHAQHK
                     AVPAVHFIHDSLKNQDRKLWGQSIQLASQKLYGLSDENNDDRVLKCCLQYQELFPCSL
                     VILCTDDRNLRNKGLISGVKSLSKEELSAELLNLSLNTVVCHQPCISKQQLKAEATPL
                     EKSCEEESTNSGLCIPLESIVSDLEKSLGTALSSILETEMKIAFGNLWMEVLYLKPPW
                     TLIHLLQCFRKHWLAVFGLVVEKNLLLTVESLYENLSKANSAVDFTTVKLLLQDSKSL
                     LHAFSTRSNYDGILPQAFAQVNKLLQTFIEVKAKLKQNPSKNTAGKRQEDNSLMKSNN
                     QEITISSGSHLPQPNRHQEMWSILENVWITIYQNSMDVFQRLGSNSALMSSKIASFEE
                     AFVYLQKLMEAVKVILEGIQRILAPNSNYQDVETLYNFLIKYEVNKNVKFTAQELYDC
                     VSQAEYREKLTIGCRQLVEMEHTMQQCNASVYMEAKKRGWCEDMLNYRT"
     misc_feature    1908..2333
                     /gene="SWT1"
                     /note="VapC-like PIN domain of Saccharomyces cerevisiae
                     Swt1p, human SWT1 and related proteins; Region:
                     PIN_Swt1-like; cd18727"
                     /db_xref="CDD:350294"
ORIGIN      
        1 actccggtac cgtagcgggc ggccggcggg acggacgggg gattccctgt cccttcgagc
       61 ctgggctggg cgactctggg ggcgggcccg gggttgagcc tgctctatgg agggtggggt
      121 tctggcccgg cccttcctct ggggctgccc ctcgccccgg ctagggtgaa gtctgttagt
      181 acgcgaaccc gtgggcctag gcggtttaca ggacgctgac aggctcgcct gtcagtcggg
      241 tgtctgctcc ttatttcgca ccttcacgca caccgtgacc cgaacacttt tccttttgtt
      301 tttatttttg ccctaaccta cgtattccca gtatcagcgc tgcgccgtgg ctgtaagatt
      361 cctacggata gggaatttgg cgggatgggg gcggggggag tgccctgtgc ttatatttag
      421 gctgttaata cccaaagctc gttaatatgt tgagcttcgg ggcacttgac tgatgcgatt
      481 cacgttcctc aagtcgtatg caagtgagtt ccccggcccc cgtccttctc ttgcctttac
      541 tctctgagac atcctgaaga aggtatcttc agagtttgga agaatcatat taatccccca
      601 tggaatggga tccttggaac aagaaagaga aatgaagatt attcttctaa tctgaaagct
      661 caactgtgaa atcaattact gccataaatt atcttacaaa gcagaatttc tggcttttca
      721 aaatgtccag caaagaatct tatggaaaaa aagagaaatc tctgagaaaa ggcactgccc
      781 catcacccaa tgttgatgaa gaagataaga aagagaaaaa aacctcagca aattctacta
      841 gttcaccttg ttctgtaata tcagtttcaa cagagaagag aaaactgaaa tcagatgata
      901 cagatattct gtactgtaat gtaaaaagaa gacaagaact gaaaagactg aatgtagaaa
      961 ctgacactcc aagaaagaga ccaaaaatta gttcttcatg ccaaggactt gttaaactcc
     1021 aagaaacatc atactcaaat gataatcata ttatttctca gagtccttct tcaaatggaa
     1081 ctaaaaaagg tataagtaaa tgtgtagatt ttaaagttaa agatattaaa ttgacaaatg
     1141 ttaagagtga gctggaccgt ggaattaaaa actttagcag tcctaagatt gccaaagatg
     1201 tgagacctaa agctgaaggt caggcaagtg aaaaaaaatg gcctcatcta cttgctcaga
     1261 gggagaagat gaaggaactc aagaaagaaa ggtacaataa atttagagac agttctgaaa
     1321 aatatgtttt ggagaaatgc aagagaatcc aattttctca ggattataag tccaacaaga
     1381 taattaagga acccctcgaa tctagaagaa gaatgatcaa tttcaaaatc ctaggagaat
     1441 cccgtgaaac ccttcagaag cttgtagaag aagatgtctt cagtttagat tctaacacgt
     1501 tgaagaccaa gcaggagaaa aaagaatgcc tggaaggctc ccagttttcg ttaaatttga
     1561 caaggcacaa aagtgaacat ttattttcag attccacgta taagcagact gttcgtgagt
     1621 gggaaggaaa atatcatgag catcaaagaa gtaatgattc aagttctagt gaaaacctaa
     1681 ccaagagttt tgaagcacca tgttcttcag tgtcacttga aagtattcaa gatacagatc
     1741 aagagatgca gattgtagaa gagcttcacg ctgcacgtgt gggaaaaagt gtggatttac
     1801 ctgtggttcc accttctgga gagttaacaa gtatggagat tgacttggtg gaagatgatg
     1861 tacattcctc ttctgcaaat actgcttcag acaaaaagct tttaattgtt gttgacacaa
     1921 atatactgat gaatcatctc aaatttgtta gaattttgaa gacaacagaa atctcaggct
     1981 ttgacaggct tgtgttaata attccctggg ttgttgtgca agagctggat cgtatgaagg
     2041 caggaaaatt actgaaacat gcccagcaca aagctgtacc tgccgttcat ttcatccatg
     2101 acagtctcaa aaatcaagat agaaagctat ggggtcagtc aatacaactt gcatctcaaa
     2161 aactttatgg attgagcgat gagaacaatg atgaccgtgt attaaaatgc tgtcttcagt
     2221 accaagaatt attcccttgt tctcttgtta ttttgtgcac ggatgataga aatttaagaa
     2281 acaaaggcct aataagtggt gtgaagtcac tcagtaaaga agaattgagt gcagaattat
     2341 taaacttatc tctgaacaca gttgtatgtc atcagccttg tatatctaaa caacaattga
     2401 aagcagaagc aacaccttta gagaagagct gtgaggagga atctacaaac tctggactgt
     2461 gcattccact tgaaagcatt gtatctgatc tcgaaaaatc tcttggcaca gctttatctt
     2521 caatattaga aacagaaatg aaaattgcgt ttggaaacct ttggatggag gtgctgtact
     2581 tgaaaccacc atggactcta atacatttat tacagtgctt tagaaagcat tggttggctg
     2641 tatttggatt agttgtggaa aagaacttgc ttttaactgt tgagagccta tatgaaaatc
     2701 tctctaaagc taacagcgca gtggatttta caacagtgaa attgctgctt caggattcta
     2761 aaagtttgct acatgctttc agtacaaggt caaattatga tggtattctt ccacaggcct
     2821 ttgctcaagt aaacaaacta ctccaaacat ttatagaggt caaggcaaaa cttaagcaaa
     2881 atccttcaaa aaatacagcg ggtaaaaggc aagaagataa ttctttgatg aaatctaata
     2941 accaagaaat caccatttcc tcaggttctc atcttcccca acccaacagg catcaagaga
     3001 tgtggtctat cctagagaat gtttggatta caatatatca aaacagcatg gatgtgtttc
     3061 aaagattggg ctcaaattca gctctgatgt cttcaaaaat agcatcattt gaagaagcat
     3121 ttgtatatct tcaaaagtta atggaagctg ttaaggttat tcttgaagga attcagagga
     3181 ttttggcacc caatagtaat tatcaagatg ttgagaccct ctataacttc ctaatcaagt
     3241 atgaggtaaa taaaaatgtc aaatttactg cccaggaact ttatgattgt gtttcacagg
     3301 ctgagtatcg ggaaaagtta accatcggat gccgccaact ggttgagatg gaacatacca
     3361 tgcaacagtg caatgcctcc gtctatatgg aggccaaaaa gaggggatgg tgtgaagaca
     3421 tgctcaacta tagaacctaa gtgctgattt tgtaacttag aaggaactgc atctatcttc
     3481 aggaacaaga gtagctttca accttttgtg ccaaacccgg gagacttgca agaaatgtct
     3541 taagaaatgt ctcaaatgtc aatgtctcat aagtacaaaa agataattgc ctattactga
     3601 caatctcatt gaggttctaa tgtgtccatt gtgggataaa ctgtgaactc aacttgtctg
     3661 aagttgactt tacctcccta cctctactcc taatactgag ccagtgtgtc taaggaaagg
     3721 agagccatct ttttggtcat cttagggcaa gagccactgc ggcatctgag gaaggcccag
     3781 gacacagtgt tagcatctct ctcaacaata aatatgggta tgtgaccaga gacgtttcca
     3841 gacctcaaga aagaattagg acatgaccat gctcaccata ttccacaaga gaaatcttac
     3901 cctgggctgt tttatgatca aactgtcttc catgtagaca caatacataa tacgtatccc
     3961 ttctacttcc cccaaggtaa gggaagtaga attttgactt gggctccaac ttgctgcagt
     4021 agcctctttt cttccctggc cttgtcactt ctcagtgcat ttctcatggg ataaacaggg
     4081 agacccctct gctcagtgtc ctcttaaatg tgaaacagca tggatttatc aggtagcagt
     4141 ggctgatgtt tgcccctggc taaaccaagt gtttaactga cttcttcttt agttataaat
     4201 accatctatg gaaatccttg tttactaaag tatattatgc ttttgttaat acattagatt
     4261 aaatctaatt tggtactcta
//
LOCUS       XM_032610613            4479 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SWT1 RNA endoribonuclease homolog (SWT1),
            transcript variant X4, mRNA.
ACCESSION   XM_032610613
VERSION     XM_032610613.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4479
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4479
                     /gene="SWT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742739"
     CDS             922..3639
                     /gene="SWT1"
                     /codon_start=1
                     /product="transcriptional protein SWT1 isoform X1"
                     /protein_id="XP_032466504.1"
                     /db_xref="GeneID:116742739"
                     /translation="MSSKESYGKKEKSLRKGTAPSPNVDEEDKKEKKTSANSTSSPCS
                     VISVSTEKRKLKSDDTDILYCNVKRRQELKRLNVETDTPRKRPKISSSCQGLVKLQET
                     SYSNDNHIISQSPSSNGTKKGISKCVDFKVKDIKLTNVKSELDRGIKNFSSPKIAKDV
                     RPKAEGQASEKKWPHLLAQREKMKELKKERYNKFRDSSEKYVLEKCKRIQFSQDYKSN
                     KIIKEPLESRRRMINFKILGESRETLQKLVEEDVFSLDSNTLKTKQEKKECLEGSQFS
                     LNLTRHKSEHLFSDSTYKQTVREWEGKYHEHQRSNDSSSSENLTKSFEAPCSSVSLES
                     IQDTDQEMQIVEELHAARVGKSVDLPVVPPSGELTSMEIDLVEDDVHSSSANTASDKK
                     LLIVVDTNILMNHLKFVRILKTTEISGFDRLVLIIPWVVVQELDRMKAGKLLKHAQHK
                     AVPAVHFIHDSLKNQDRKLWGQSIQLASQKLYGLSDENNDDRVLKCCLQYQELFPCSL
                     VILCTDDRNLRNKGLISGVKSLSKEELSAELLNLSLNTVVCHQPCISKQQLKAEATPL
                     EKSCEEESTNSGLCIPLESIVSDLEKSLGTALSSILETEMKIAFGNLWMEVLYLKPPW
                     TLIHLLQCFRKHWLAVFGLVVEKNLLLTVESLYENLSKANSAVDFTTVKLLLQDSKSL
                     LHAFSTRSNYDGILPQAFAQVNKLLQTFIEVKAKLKQNPSKNTAGKRQEDNSLMKSNN
                     QEITISSGSHLPQPNRHQEMWSILENVWITIYQNSMDVFQRLGSNSALMSSKIASFEE
                     AFVYLQKLMEAVKVILEGIQRILAPNSNYQDVETLYNFLIKYEVNKNVKFTAQELYDC
                     VSQAEYREKLTIGCRQLVEMEHTMQQCNASVYMEAKKRGWCEDMLNYRT"
     misc_feature    2107..2532
                     /gene="SWT1"
                     /note="VapC-like PIN domain of Saccharomyces cerevisiae
                     Swt1p, human SWT1 and related proteins; Region:
                     PIN_Swt1-like; cd18727"
                     /db_xref="CDD:350294"
ORIGIN      
        1 catgaaacaa caaaaacatt tattacctca cagtttgtat gggtcaggaa ttcagaaatg
       61 gctttctggg tgtatctggc actgggtctc atgagactgc agtgaagata ccgaccaggg
      121 atgctgccat gtgaaggctt gcttagggct gcaggatcag cttcaaaggt ggctcattca
      181 catgcctggc agtcaattca tttttggcaa gaggtctcag ttcttccttg gtggccttct
      241 ttttgggtta cttgaatgtc ctcatgatat ggtggttggc tttccctaga gtgaacaatt
      301 caagatagag agtaaggcag aagccacaat gtcattagat ctagccacat actaccatat
      361 agcaatatcc tgttggttac gtgggttgtc tctatttatt gtgagagggg gctacataaa
      421 actgtaatta ccaggtagca gagatcatca ggagccattt tggagactgg ccggcacagg
      481 aagtctcccc tcatttagtt tgtattctga tttccataga atcaatatga atttcacact
      541 aatatgagta taaatcattt gtcatagtac acatatgggt gtttttcctt tgatagtcca
      601 ctatctgcag tgtttttttt caatttgtct tatgggtaac aggttcaatt gtgttttttt
      661 tgtattcaca gcacaatgtg aatgggttta aattgtaaaa ggtaacataa ccagtccatt
      721 gcctctaagc agtttatctc atggaagtta ttatttttca ttatgccttt ccccgcttca
      781 ccccccacca agtcccccat ggaatgggat ccttggaaca agaaagagaa atgaagatta
      841 ttcttctaat ctgaaagctc aactgtgaaa tcaattactg ccataaatta tcttacaaag
      901 cagaatttct ggcttttcaa aatgtccagc aaagaatctt atggaaaaaa agagaaatct
      961 ctgagaaaag gcactgcccc atcacccaat gttgatgaag aagataagaa agagaaaaaa
     1021 acctcagcaa attctactag ttcaccttgt tctgtaatat cagtttcaac agagaagaga
     1081 aaactgaaat cagatgatac agatattctg tactgtaatg taaaaagaag acaagaactg
     1141 aaaagactga atgtagaaac tgacactcca agaaagagac caaaaattag ttcttcatgc
     1201 caaggacttg ttaaactcca agaaacatca tactcaaatg ataatcatat tatttctcag
     1261 agtccttctt caaatggaac taaaaaaggt ataagtaaat gtgtagattt taaagttaaa
     1321 gatattaaat tgacaaatgt taagagtgag ctggaccgtg gaattaaaaa ctttagcagt
     1381 cctaagattg ccaaagatgt gagacctaaa gctgaaggtc aggcaagtga aaaaaaatgg
     1441 cctcatctac ttgctcagag ggagaagatg aaggaactca agaaagaaag gtacaataaa
     1501 tttagagaca gttctgaaaa atatgttttg gagaaatgca agagaatcca attttctcag
     1561 gattataagt ccaacaagat aattaaggaa cccctcgaat ctagaagaag aatgatcaat
     1621 ttcaaaatcc taggagaatc ccgtgaaacc cttcagaagc ttgtagaaga agatgtcttc
     1681 agtttagatt ctaacacgtt gaagaccaag caggagaaaa aagaatgcct ggaaggctcc
     1741 cagttttcgt taaatttgac aaggcacaaa agtgaacatt tattttcaga ttccacgtat
     1801 aagcagactg ttcgtgagtg ggaaggaaaa tatcatgagc atcaaagaag taatgattca
     1861 agttctagtg aaaacctaac caagagtttt gaagcaccat gttcttcagt gtcacttgaa
     1921 agtattcaag atacagatca agagatgcag attgtagaag agcttcacgc tgcacgtgtg
     1981 ggaaaaagtg tggatttacc tgtggttcca ccttctggag agttaacaag tatggagatt
     2041 gacttggtgg aagatgatgt acattcctct tctgcaaata ctgcttcaga caaaaagctt
     2101 ttaattgttg ttgacacaaa tatactgatg aatcatctca aatttgttag aattttgaag
     2161 acaacagaaa tctcaggctt tgacaggctt gtgttaataa ttccctgggt tgttgtgcaa
     2221 gagctggatc gtatgaaggc aggaaaatta ctgaaacatg cccagcacaa agctgtacct
     2281 gccgttcatt tcatccatga cagtctcaaa aatcaagata gaaagctatg gggtcagtca
     2341 atacaacttg catctcaaaa actttatgga ttgagcgatg agaacaatga tgaccgtgta
     2401 ttaaaatgct gtcttcagta ccaagaatta ttcccttgtt ctcttgttat tttgtgcacg
     2461 gatgatagaa atttaagaaa caaaggccta ataagtggtg tgaagtcact cagtaaagaa
     2521 gaattgagtg cagaattatt aaacttatct ctgaacacag ttgtatgtca tcagccttgt
     2581 atatctaaac aacaattgaa agcagaagca acacctttag agaagagctg tgaggaggaa
     2641 tctacaaact ctggactgtg cattccactt gaaagcattg tatctgatct cgaaaaatct
     2701 cttggcacag ctttatcttc aatattagaa acagaaatga aaattgcgtt tggaaacctt
     2761 tggatggagg tgctgtactt gaaaccacca tggactctaa tacatttatt acagtgcttt
     2821 agaaagcatt ggttggctgt atttggatta gttgtggaaa agaacttgct tttaactgtt
     2881 gagagcctat atgaaaatct ctctaaagct aacagcgcag tggattttac aacagtgaaa
     2941 ttgctgcttc aggattctaa aagtttgcta catgctttca gtacaaggtc aaattatgat
     3001 ggtattcttc cacaggcctt tgctcaagta aacaaactac tccaaacatt tatagaggtc
     3061 aaggcaaaac ttaagcaaaa tccttcaaaa aatacagcgg gtaaaaggca agaagataat
     3121 tctttgatga aatctaataa ccaagaaatc accatttcct caggttctca tcttccccaa
     3181 cccaacaggc atcaagagat gtggtctatc ctagagaatg tttggattac aatatatcaa
     3241 aacagcatgg atgtgtttca aagattgggc tcaaattcag ctctgatgtc ttcaaaaata
     3301 gcatcatttg aagaagcatt tgtatatctt caaaagttaa tggaagctgt taaggttatt
     3361 cttgaaggaa ttcagaggat tttggcaccc aatagtaatt atcaagatgt tgagaccctc
     3421 tataacttcc taatcaagta tgaggtaaat aaaaatgtca aatttactgc ccaggaactt
     3481 tatgattgtg tttcacaggc tgagtatcgg gaaaagttaa ccatcggatg ccgccaactg
     3541 gttgagatgg aacataccat gcaacagtgc aatgcctccg tctatatgga ggccaaaaag
     3601 aggggatggt gtgaagacat gctcaactat agaacctaag tgctgatttt gtaacttaga
     3661 aggaactgca tctatcttca ggaacaagag tagctttcaa ccttttgtgc caaacccggg
     3721 agacttgcaa gaaatgtctt aagaaatgtc tcaaatgtca atgtctcata agtacaaaaa
     3781 gataattgcc tattactgac aatctcattg aggttctaat gtgtccattg tgggataaac
     3841 tgtgaactca acttgtctga agttgacttt acctccctac ctctactcct aatactgagc
     3901 cagtgtgtct aaggaaagga gagccatctt tttggtcatc ttagggcaag agccactgcg
     3961 gcatctgagg aaggcccagg acacagtgtt agcatctctc tcaacaataa atatgggtat
     4021 gtgaccagag acgtttccag acctcaagaa agaattagga catgaccatg ctcaccatat
     4081 tccacaagag aaatcttacc ctgggctgtt ttatgatcaa actgtcttcc atgtagacac
     4141 aatacataat acgtatccct tctacttccc ccaaggtaag ggaagtagaa ttttgacttg
     4201 ggctccaact tgctgcagta gcctcttttc ttccctggcc ttgtcacttc tcagtgcatt
     4261 tctcatggga taaacaggga gacccctctg ctcagtgtcc tcttaaatgt gaaacagcat
     4321 ggatttatca ggtagcagtg gctgatgttt gcccctggct aaaccaagtg tttaactgac
     4381 ttcttcttta gttataaata ccatctatgg aaatccttgt ttactaaagt atattatgct
     4441 tttgttaata cattagatta aatctaattt ggtactcta
//
LOCUS       XM_032610623            4076 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SWT1 RNA endoribonuclease homolog (SWT1),
            transcript variant X5, mRNA.
ACCESSION   XM_032610623
VERSION     XM_032610623.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4076
                     /gene="SWT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742739"
     CDS             603..3236
                     /gene="SWT1"
                     /codon_start=1
                     /product="transcriptional protein SWT1 isoform X2"
                     /protein_id="XP_032466514.1"
                     /db_xref="GeneID:116742739"
                     /translation="MSSKESYGKKEKSLRKGTAPSPNVDEEKSDDTDILYCNVKRRQE
                     LKRLNVETDTPRKRPKISSSCQGLVKLQETSYSNDNHIISQSPSSNGTKKGISKCVDF
                     KVKDIKLTNVKSELDRGIKNFSSPKIAKDVRPKAEGQASEKKWPHLLAQREKMKELKK
                     ERYNKFRDSSEKYVLEKCKRIQFSQDYKSNKIIKEPLESRRRMINFKILGESRETLQK
                     LVEEDVFSLDSNTLKTKQEKKECLEGSQFSLNLTRHKSEHLFSDSTYKQTVREWEGKY
                     HEHQRSNDSSSSENLTKSFEAPCSSVSLESIQDTDQEMQIVEELHAARVGKSVDLPVV
                     PPSGELTSMEIDLVEDDVHSSSANTASDKKLLIVVDTNILMNHLKFVRILKTTEISGF
                     DRLVLIIPWVVVQELDRMKAGKLLKHAQHKAVPAVHFIHDSLKNQDRKLWGQSIQLAS
                     QKLYGLSDENNDDRVLKCCLQYQELFPCSLVILCTDDRNLRNKGLISGVKSLSKEELS
                     AELLNLSLNTVVCHQPCISKQQLKAEATPLEKSCEEESTNSGLCIPLESIVSDLEKSL
                     GTALSSILETEMKIAFGNLWMEVLYLKPPWTLIHLLQCFRKHWLAVFGLVVEKNLLLT
                     VESLYENLSKANSAVDFTTVKLLLQDSKSLLHAFSTRSNYDGILPQAFAQVNKLLQTF
                     IEVKAKLKQNPSKNTAGKRQEDNSLMKSNNQEITISSGSHLPQPNRHQEMWSILENVW
                     ITIYQNSMDVFQRLGSNSALMSSKIASFEEAFVYLQKLMEAVKVILEGIQRILAPNSN
                     YQDVETLYNFLIKYEVNKNVKFTAQELYDCVSQAEYREKLTIGCRQLVEMEHTMQQCN
                     ASVYMEAKKRGWCEDMLNYRT"
     misc_feature    1704..2129
                     /gene="SWT1"
                     /note="VapC-like PIN domain of Saccharomyces cerevisiae
                     Swt1p, human SWT1 and related proteins; Region:
                     PIN_Swt1-like; cd18727"
                     /db_xref="CDD:350294"
ORIGIN      
        1 actccggtac cgtagcgggc ggccggcggg acggacgggg gattccctgt cccttcgagc
       61 ctgggctggg cgactctggg ggcgggcccg gggttgagcc tgctctatgg agggtggggt
      121 tctggcccgg cccttcctct ggggctgccc ctcgccccgg ctagggtgaa gtctgttagt
      181 acgcgaaccc gtgggcctag gcggtttaca ggacgctgac aggctcgcct gtcagtcggg
      241 tgtctgctcc ttatttcgca ccttcacgca caccgtgacc cgaacacttt tccttttgtt
      301 tttatttttg ccctaaccta cgtattccca gtatcagcgc tgcgccgtgg ctgtaagatt
      361 cctacggata gggaatttgg cgggatgggg gcggggggag tgccctgtgc ttatatttag
      421 gctgttaata cccaaagctc gttaatatgt tgagcttcgg ggcacttgac tgatgcgatt
      481 cacgttcctc aagtcgtatg caagtgagtt ccccggcccc cgtccttctc ttgcctttac
      541 tctctgagac atcctgaaga aggtatcttc agagtttgga agaatcatat taacttttca
      601 aaatgtccag caaagaatct tatggaaaaa aagagaaatc tctgagaaaa ggcactgccc
      661 catcacccaa tgttgatgaa gaaaaatcag atgatacaga tattctgtac tgtaatgtaa
      721 aaagaagaca agaactgaaa agactgaatg tagaaactga cactccaaga aagagaccaa
      781 aaattagttc ttcatgccaa ggacttgtta aactccaaga aacatcatac tcaaatgata
      841 atcatattat ttctcagagt ccttcttcaa atggaactaa aaaaggtata agtaaatgtg
      901 tagattttaa agttaaagat attaaattga caaatgttaa gagtgagctg gaccgtggaa
      961 ttaaaaactt tagcagtcct aagattgcca aagatgtgag acctaaagct gaaggtcagg
     1021 caagtgaaaa aaaatggcct catctacttg ctcagaggga gaagatgaag gaactcaaga
     1081 aagaaaggta caataaattt agagacagtt ctgaaaaata tgttttggag aaatgcaaga
     1141 gaatccaatt ttctcaggat tataagtcca acaagataat taaggaaccc ctcgaatcta
     1201 gaagaagaat gatcaatttc aaaatcctag gagaatcccg tgaaaccctt cagaagcttg
     1261 tagaagaaga tgtcttcagt ttagattcta acacgttgaa gaccaagcag gagaaaaaag
     1321 aatgcctgga aggctcccag ttttcgttaa atttgacaag gcacaaaagt gaacatttat
     1381 tttcagattc cacgtataag cagactgttc gtgagtggga aggaaaatat catgagcatc
     1441 aaagaagtaa tgattcaagt tctagtgaaa acctaaccaa gagttttgaa gcaccatgtt
     1501 cttcagtgtc acttgaaagt attcaagata cagatcaaga gatgcagatt gtagaagagc
     1561 ttcacgctgc acgtgtggga aaaagtgtgg atttacctgt ggttccacct tctggagagt
     1621 taacaagtat ggagattgac ttggtggaag atgatgtaca ttcctcttct gcaaatactg
     1681 cttcagacaa aaagctttta attgttgttg acacaaatat actgatgaat catctcaaat
     1741 ttgttagaat tttgaagaca acagaaatct caggctttga caggcttgtg ttaataattc
     1801 cctgggttgt tgtgcaagag ctggatcgta tgaaggcagg aaaattactg aaacatgccc
     1861 agcacaaagc tgtacctgcc gttcatttca tccatgacag tctcaaaaat caagatagaa
     1921 agctatgggg tcagtcaata caacttgcat ctcaaaaact ttatggattg agcgatgaga
     1981 acaatgatga ccgtgtatta aaatgctgtc ttcagtacca agaattattc ccttgttctc
     2041 ttgttatttt gtgcacggat gatagaaatt taagaaacaa aggcctaata agtggtgtga
     2101 agtcactcag taaagaagaa ttgagtgcag aattattaaa cttatctctg aacacagttg
     2161 tatgtcatca gccttgtata tctaaacaac aattgaaagc agaagcaaca cctttagaga
     2221 agagctgtga ggaggaatct acaaactctg gactgtgcat tccacttgaa agcattgtat
     2281 ctgatctcga aaaatctctt ggcacagctt tatcttcaat attagaaaca gaaatgaaaa
     2341 ttgcgtttgg aaacctttgg atggaggtgc tgtacttgaa accaccatgg actctaatac
     2401 atttattaca gtgctttaga aagcattggt tggctgtatt tggattagtt gtggaaaaga
     2461 acttgctttt aactgttgag agcctatatg aaaatctctc taaagctaac agcgcagtgg
     2521 attttacaac agtgaaattg ctgcttcagg attctaaaag tttgctacat gctttcagta
     2581 caaggtcaaa ttatgatggt attcttccac aggcctttgc tcaagtaaac aaactactcc
     2641 aaacatttat agaggtcaag gcaaaactta agcaaaatcc ttcaaaaaat acagcgggta
     2701 aaaggcaaga agataattct ttgatgaaat ctaataacca agaaatcacc atttcctcag
     2761 gttctcatct tccccaaccc aacaggcatc aagagatgtg gtctatccta gagaatgttt
     2821 ggattacaat atatcaaaac agcatggatg tgtttcaaag attgggctca aattcagctc
     2881 tgatgtcttc aaaaatagca tcatttgaag aagcatttgt atatcttcaa aagttaatgg
     2941 aagctgttaa ggttattctt gaaggaattc agaggatttt ggcacccaat agtaattatc
     3001 aagatgttga gaccctctat aacttcctaa tcaagtatga ggtaaataaa aatgtcaaat
     3061 ttactgccca ggaactttat gattgtgttt cacaggctga gtatcgggaa aagttaacca
     3121 tcggatgccg ccaactggtt gagatggaac ataccatgca acagtgcaat gcctccgtct
     3181 atatggaggc caaaaagagg ggatggtgtg aagacatgct caactataga acctaagtgc
     3241 tgattttgta acttagaagg aactgcatct atcttcagga acaagagtag ctttcaacct
     3301 tttgtgccaa acccgggaga cttgcaagaa atgtcttaag aaatgtctca aatgtcaatg
     3361 tctcataagt acaaaaagat aattgcctat tactgacaat ctcattgagg ttctaatgtg
     3421 tccattgtgg gataaactgt gaactcaact tgtctgaagt tgactttacc tccctacctc
     3481 tactcctaat actgagccag tgtgtctaag gaaaggagag ccatcttttt ggtcatctta
     3541 gggcaagagc cactgcggca tctgaggaag gcccaggaca cagtgttagc atctctctca
     3601 acaataaata tgggtatgtg accagagacg tttccagacc tcaagaaaga attaggacat
     3661 gaccatgctc accatattcc acaagagaaa tcttaccctg ggctgtttta tgatcaaact
     3721 gtcttccatg tagacacaat acataatacg tatcccttct acttccccca aggtaaggga
     3781 agtagaattt tgacttgggc tccaacttgc tgcagtagcc tcttttcttc cctggccttg
     3841 tcacttctca gtgcatttct catgggataa acagggagac ccctctgctc agtgtcctct
     3901 taaatgtgaa acagcatgga tttatcaggt agcagtggct gatgtttgcc cctggctaaa
     3961 ccaagtgttt aactgacttc ttctttagtt ataaatacca tctatggaaa tccttgttta
     4021 ctaaagtata ttatgctttt gttaatacat tagattaaat ctaatttggt actcta
//
LOCUS       XR_004346566            2398 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SWT1 RNA endoribonuclease homolog (SWT1),
            transcript variant X6, misc_RNA.
ACCESSION   XR_004346566
VERSION     XR_004346566.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2398
                     /gene="SWT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742739"
     misc_RNA        1..2398
                     /gene="SWT1"
                     /product="SWT1 RNA endoribonuclease homolog, transcript
                     variant X6"
                     /db_xref="GeneID:116742739"
ORIGIN      
        1 ttcccttggc ccgggcgtcc cgagtcgcca ccggcgggag cgctggtgaa taagcttttc
       61 aaaatgtcca gcaaagaatc ttatggaaaa aaagagaaat ctctgagaaa aggcactgcc
      121 ccatcaccca atgttgatga agaagataag aaagagaaaa aaacctcagc aaattctact
      181 agttcacctt gttctgtaat atcagtttca acagagaaga gaaaactgaa atcagatgat
      241 acagatattc tgtactgtaa tgtaaaaaga agacaagaac tgaaaagact gaatgtagaa
      301 actgacactc caagaaagag accaaaaatt agttcttcat gccaaggact tgttaaactc
      361 caagaaacat catactcaaa tgataatcat attatttctc agagtccttc ttcaaatgga
      421 actaaaaaag gtataagtaa atgtgtagat tttaaagtta aagatattaa attgacaaat
      481 gttaagagtg agctggaccg tggaattaaa aactttagca gtcctaagat tgccaaagat
      541 gtgagaccta aagctgaagg tcaggcaagt gaaaaaaaat ggcctcatct acttgctcag
      601 agggagaaga tgaaggaact caagaaagaa aggtacaata aatttagaga cagttctgaa
      661 aaatatgttt tggagaaatg caagagaatc caattttctc aggattataa gtccaacaag
      721 ataattaagg aacccctcga atctagaaga agaatgatca atttcaaaat cctaggagaa
      781 tcccgtgaaa cccttcagaa gcttgtagaa gaagatgtct tcagtttaga ttctaacacg
      841 ttgaagacca agcaggagaa aaaagaatgc ctggaaggct cccagttttc gttaaatttg
      901 acaaggcaca aaagtgaaca tttattttca gattccacgt ataagcagac tgttcgtgag
      961 tgggaaggaa aatatcatga gcatcaaaga agtaatgatt caagttctag tgaaaaccta
     1021 accaagagtt ttgaagcacc atgttcttca gtgtcacttg aaagtattca agatacagat
     1081 caagagatgc agattgtaga agagcttcac gctgcacgtg tgggaaaaag tgtggattta
     1141 cctgtggttc caccttctgg agagttaaca agtatggaga ttgacttggt ggaagatgat
     1201 gtacattcct cttctgcaaa tactgcttca gacaaaaagc ttttaattgt tgttgacaca
     1261 aatatactga tgaatcatct caaatttgtt agaattttga agacaacaga aatctcaggc
     1321 tttgacaggc ttgtgttaat aattccctgg gttgttgtgc aagagctgga tcgtatgaag
     1381 gcaggaaaat tactgaaaca tgcccagcac aaagctgtac ctgccgttca tttcatccat
     1441 gacagtctca aaaatcaaga tagaaagcta tggggtcagt caatacaact tgcatctcaa
     1501 aaactttatg gattgagcga tgagaacaat gatgaccgtg tattaaaatg ctgtcttcag
     1561 taccaagaat tattcccttg ttctcttgtt attttgtgca cggatgatag aaatttaaga
     1621 aacaaaggcc taataagtgg tgtgaagtca ctcagtaaag aagaattgag tgcagaatta
     1681 ttaaacttat ctctgaacac agttgtatgt catcagcctt gtatatctaa acaacaattg
     1741 aaagcagaag caacaccttt agagaagagc tgtgaggagg aatctacaaa ctctggactg
     1801 tgcattccac ttgaaagcat tgtatctgat ctcgaaaaat ctcttggcac agctttatct
     1861 tcaatattag aaacagaaat gaaaattgcg tttggaaacc tttggatgga ggtgctgtac
     1921 ttgaaaccac catggactct aatacattta ttacagtgct ttagaaagca ttggttggct
     1981 gtatttggat tagttgtgga aaagaacttg cttttaactg ttgagagcct atatgaaaat
     2041 ctctctaaag ctaacagcgc agtggatttt acaacagtga aattgctgct tcaggattct
     2101 aaaagtttgc tacatgcttt cagtacaagg tcaaattatg atggtattct tccacaggcc
     2161 tttgctcaag taaacaaact actccaaaca tttatagagc atggatgtgt ttcaaagatt
     2221 gggctcaaat tcagctctga tgtcttcaaa aatagcatca tttgaagaag catttgtata
     2281 tcttcaaaag ttaatggaag ctgttaaggt tattcttgaa ggaattcaga ggattttggc
     2341 acccaatagt aattatcaag atgttgagac cctctataac ttcctaatca agtatgag
//
LOCUS       XM_032610641            4237 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dimethylarginine dimethylaminohydrolase 1
            (DDAH1), transcript variant X1, mRNA.
ACCESSION   XM_032610641
VERSION     XM_032610641.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4237
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4237
                     /gene="DDAH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742762"
     CDS             128..1075
                     /gene="DDAH1"
                     /codon_start=1
                     /product="N(G),N(G)-dimethylarginine
                     dimethylaminohydrolase 1 isoform X1"
                     /protein_id="XP_032466532.1"
                     /db_xref="GeneID:116742762"
                     /translation="MGGGGKLQQTGPGRWGAGETGVTCVHSLSIYYVLVRLLVNDSLR
                     QEEQQLLKSCSKKVQKPQMSHRLLPSSAESCSSVHVDRLKGKCANVHGFIGAEKELWQ
                     LLLRLFHRKSFPQKSNSYFEDQLSKTYIQVDMMKEALEKLQLNVVEMKDENATLDGGD
                     VLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVVEALHLKSFCSMAGPNLIAI
                     GSSESAQKALKIMQQMSDHRYDKLTVPDDTAANCLYLNIPNKGHVLLHRTPEEYPESA
                     KVYEKLKDHMLIPVSHSEMEKVDGLLTCCSILINKKVDS"
     misc_feature    <524..1045
                     /gene="DDAH1"
                     /note="N-Dimethylarginine dimethylaminohydrolase [Amino
                     acid transport and metabolism]; Region: DdaH; COG1834"
                     /db_xref="CDD:441439"
ORIGIN      
        1 ttctaacaag ggttgtgtgc gtttgtttct ggacttcatc tggggaatct tggaggatga
       61 gtttgcccca gaggagaaac ttacagaacc tcaccgtcag ctgcccattt aaagcagggg
      121 gtgtgtgatg ggagggggtg ggaaactgca gcaaactggg ccaggacgct ggggagccgg
      181 agagacggga gtaacctgtg tacacagcct ttctatatac tatgtcctgg tgagactgct
      241 agtaaacgac agcctcagac aagaggaaca gcagctcctc aagtcctgct caaagaaggt
      301 ccagaaaccc cagatgtccc atcgccttct cccctcctct gctgagagct gcagttcagt
      361 tcacgttgac agattgaagg gtaaatgtgc aaacgttcac ggtttcatcg gtgcagaaaa
      421 ggagctctgg caacttctgc tgagactttt ccataggaaa tccttccccc aaaaaagcaa
      481 cagctatttt gaagaccaac tttccaaaac ttatattcag gttgacatga tgaaagaagc
      541 attagaaaaa cttcagctca acgtagtaga gatgaaagat gaaaatgcaa ccttagatgg
      601 tggagatgtc ttattcacag gcagagagtt ttttgtgggc ctttccaaaa ggacaaatca
      661 acgaggtgct gaaatcttgg ctgatacttt taaggactat gcggtctcca cagtcccagt
      721 ggtcgaagct ttgcacttga agagtttctg cagcatggct gggcctaacc taatcgcaat
      781 tggatccagt gaatctgcac agaaggctct caagatcatg caacagatga gtgaccaccg
      841 ctacgacaaa ctcactgtgc ctgatgacac ggccgcaaac tgcttatatc taaatatccc
      901 caataaaggc cacgtcttgc tgcaccgaac cccagaagag tatccagaaa gtgcaaaggt
      961 ttatgaaaag ctgaaggacc atatgctgat ccccgtgagc cattcggaaa tggaaaaggt
     1021 ggacgggctg ctgacctgct gctcgatttt aattaacaag aaagtagact cctgagtcgc
     1081 agtccctccc ttgttgccgg cagtactgca cttgtaaggc cgataactgt acccatccct
     1141 accgttttca ttgacaatct cttatgccac tctgctacta acactggtct acaattctaa
     1201 atttaattgc ttcgttctgc acctccccca gcccctcccc tcgaggtggt acctaaactg
     1261 tggatttgct caatgaatta agcaatctag aaaatataga gctaatgaat tattcaaatg
     1321 tgattaataa ttgtaaggaa acactcattt tagtgtttgt gttatcggtg tgaaaattgt
     1381 ttacttgcca atataaaccg aagaatgtct ttttgatcag tcagctaagc tggattttct
     1441 ttctgtatat cattaattat ctttggctcc tatgaaattc cctggtctgt ggatcctcct
     1501 cctttccctc tttgtttcca tctgaagtat gaaaactttc ccacttctat cacagtcacc
     1561 ttgaccttgg gtagaatccg gggtctcgcc ttctgtacat ctccctgcag gtcgaccctg
     1621 tctgccggta gtctttctgc ctcaccgcta catctgccgc caccaccact tacccgcaga
     1681 gggtcaaaca aacaggcctc tcagcagaac cgtgaccaaa atcagagcgg ctgtttaggg
     1741 gggagttcac tgcacagagg cacatcccag tggggtttgc cccagagatc taaattctag
     1801 aagaagtagg gcaccacacc taggaaggtg aattcagcac cagttggttg ctagggagtt
     1861 gcaggtcagg aagcttggac acaccccatg agtacaacac tttagaaagt ctttaagtca
     1921 cattccatga atttttgctt tattactggc catatacaga cctgggggaa tagacttatt
     1981 tttttctttc aatttacttt catttccccc cattgtgact caccctgttt ccaggcttct
     2041 accccttaat ctacagttat ttttttgctg acctacagag ttatttcttt caaaagagac
     2101 attacatcta aaaatgatta ttgatggtct agtgcgagcc agatggagca tgttcaggaa
     2161 gtgataggct tggtgcttga aatcagccgc agacaatgga caattctact ttgaaatatc
     2221 cgtgaatatt tactgtggaa ttcaattaaa acttctctcc tctgtagcct tccaattaca
     2281 caaccttaaa ctgacacgaa tctcttaaca aagaacaatg ccgcagtgaa gggagagatg
     2341 gttgtctttt acttaaatga aagaatcggt cttttagcag accagggaaa tggtactttc
     2401 caaggaatgg tgactgatcc aggcatgtta tcaaacttcc cagtcatctc cacctttcct
     2461 gtattgccta tggctaagat taagattcag ggagtttaag gaatgctact tcacgtcttg
     2521 ctaggctcac ctaaggtgtc tgtaatcaga cattcctcat gtttggtgac caagagagaa
     2581 taccttcatt catttcatct ccccctgaac caatggaagt gagaaacctc tgagcaaacc
     2641 aagacaacct taactactat ttttttcgtt tattcgatca ttttatgtca gacttagaag
     2701 aagttccttc tcctccttct ttttcttttt gcttgacttt aatattcata tcacgttcag
     2761 atatctaatt tcatgcatcc tatgactgaa acgtatcttg gtcactggca tacttccaac
     2821 tgtctcatca tgggtgaata atatgttttt accacagaga gaatgaatgt tacccacatg
     2881 cccaagttaa taaagaaaaa ttgtcctcag tagttatggt tgccctttgg ggttaaatcc
     2941 ggccctatgc tggcaagaac agaaatcctt cctcaaaaac aaccacagga aaactcactc
     3001 aatcagccac ttcagtctta atagtacagc taactggcat ataatttcca atatctttat
     3061 ttctagcttt ccacactaga gaactgttct ctattatgtt tagaaaattg caagtgaatc
     3121 aatttttctt ttgaaccatt tgttctacag aaggctgttt tcacttttcc ttttcttttc
     3181 atcgttccat ctttccttct ctttgtctca agaaatcact tagaatctat gtgcctcttc
     3241 tacagaatct tattctgcac tgctacatca ccgacaaggc tggcttcttt ggactctgtc
     3301 tgtgatatgc tgatgtgaaa acctacagta tttgcagcat agaagtagta ttcctttggt
     3361 gtgctcatcg gcatcacgtt atctttgaag aggaaagaca acccgctacc ccgttaccta
     3421 ggttcccctc tcgtccattg tgatttataa ggaaaagcta acagaaactg ctttttgacg
     3481 ttataaagac attagagatt gtatttaagt aaataaaagt tgagtcagaa tcacttggtc
     3541 agtaagattc aacttactaa ggaccatata gagaaagtac atgatttagc atgacttctt
     3601 caactgtgat gacttgctat agaaatcagc aggcagatct ctctcctgtg tattgattgc
     3661 tcttttaagc tactgtgaag aggctactaa ggccatctct tcatctagaa ggggagaaat
     3721 agtctgtaga tgaacaatgt gacttattta gagttgcatg ttagtcttcc tgattattta
     3781 ctcctttaca ttctacagaa ctcagacatg atttccacat ggtgttagat tcgtgcattt
     3841 tatcgtactg accatcctgt tacagccagt gtatggttat ccactctgtg tgccaaaacc
     3901 agtcatgcct ttcacggtcc tttagtccag agaaattctg cactgatttt agtctcttgc
     3961 tgtactgatc ctacaagtat accaatcacg atggaataaa gcgtgagttg tactgtgatc
     4021 aatagcctat gtctctttct tgcaatagcc tatgtctctt tcttgcaata gccttgtctc
     4081 tttctgctgt ggtgaatgaa gtcaccattt ctttgctacc agaggtggga agtttttgtt
     4141 tttgttttct cttgtcctat aagctatgga attagaaata cttacctgta agtcaactgc
     4201 tatcaaaagc ttggattaaa atgataatca aaggata
//
LOCUS       XM_032610649            2019 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dimethylarginine dimethylaminohydrolase 1
            (DDAH1), transcript variant X2, mRNA.
ACCESSION   XM_032610649
VERSION     XM_032610649.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2019
                     /gene="DDAH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 17 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116742762"
     CDS             132..989
                     /gene="DDAH1"
                     /codon_start=1
                     /product="N(G),N(G)-dimethylarginine
                     dimethylaminohydrolase 1 isoform X2"
                     /protein_id="XP_032466540.1"
                     /db_xref="GeneID:116742762"
                     /translation="MASLGHPAAFGRATHVVVRGLPESLGQHALRSTKGDEVDFARAE
                     RQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEV
                     DMMKEALEKLQLNVVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKD
                     YAVSTVPVVEALHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDT
                     AANCLYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSHSEMEKVDGLLTCCS
                     ILINKKVDS"
     misc_feature    180..959
                     /gene="DDAH1"
                     /note="N-Dimethylarginine dimethylaminohydrolase [Amino
                     acid transport and metabolism]; Region: DdaH; COG1834"
                     /db_xref="CDD:441439"
ORIGIN      
        1 ccgggcgcga gcagggctcc cgctgcacca cattcatctg ctgccaaggg gagccgccgg
       61 gcgctcgcaa gctcggcgcg cgctgcccgc ggaagacccg gctgccgcgc cccccgccgc
      121 ctccccgagt catggcctcg ctcggccatc ccgccgcctt cggccgggcc acccacgtcg
      181 tcgtgcgggg actgcccgag tccctcggcc agcacgcgct gaggagcacc aagggcgacg
      241 aggtggattt cgcccgcgcc gagcggcagc accagctgta cgtgggcgtg ctgggcagta
      301 agctggggct gcaggtggtg cagctgccgg ccgacgagag cctcccggac tgcgtgttcg
      361 tggaggacgt ggccgtggtg tgcgaggaga cggccctcat cacccgcccc ggggcgccga
      421 gccggaggaa ggaggttgac atgatgaaag aagcattaga aaaacttcag ctcaacgtag
      481 tagagatgaa agatgaaaat gcaaccttag atggtggaga tgtcttattc acaggcagag
      541 agttttttgt gggcctttcc aaaaggacaa atcaacgagg tgctgaaatc ttggctgata
      601 cttttaagga ctatgcggtc tccacagtcc cagtggtcga agctttgcac ttgaagagtt
      661 tctgcagcat ggctgggcct aacctaatcg caattggatc cagtgaatct gcacagaagg
      721 ctctcaagat catgcaacag atgagtgacc accgctacga caaactcact gtgcctgatg
      781 acacggccgc aaactgctta tatctaaata tccccaataa aggccacgtc ttgctgcacc
      841 gaaccccaga agagtatcca gaaagtgcaa aggtttatga aaagctgaag gaccatatgc
      901 tgatccccgt gagccattcg gaaatggaaa aggtggacgg gctgctgacc tgctgctcga
      961 ttttaattaa caagaaagta gactcctgag tcgcagtccc tcccttgttg ccggcagtac
     1021 tgcacttaat cttattctgc actgctacat caccgacaag gctggcttct ttggactctg
     1081 tctgtgatat gctgatgtga aaacctacag tatttgcagc atagaagtag tattcctttg
     1141 gtgtgctcat cggcatcacg ttatctttga agaggaaaga caacccgcta ccccgttacc
     1201 taggttcccc tctcgtccat tgtgatttat aaggaaaagc taacagaaac tgctttttga
     1261 cgttataaag acattagaga ttgtatttaa gtaaataaaa gttgagtcag aatcacttgg
     1321 tcagtaagat tcaacttact aaggaccata tagagaaagt acatgattta gcatgacttc
     1381 ttcaactgtg atgacttgct atagaaatca gcaggcagat ctctctcctg tgtattgatt
     1441 gctcttttaa gctactgtga agaggctact aaggccatct cttcatctag aaggggagaa
     1501 atagtctgta gatgaacaat gtgacttatt tagagttgca tgttagtctt cctgattatt
     1561 tactccttta cattctacag aactcagaca tgatttccac atggtgttag attcgtgcat
     1621 tttatcgtac tgaccatcct gttacagcca gtgtatggtt atccactctg tgtgccaaaa
     1681 ccagtcatgc ctttcacggt cctttagtcc agagaaattc tgcactgatt ttagtctctt
     1741 gctgtactga tcctacaagt ataccaatca cgatggaata aagcgtgagt tgtactgtga
     1801 tcaatagcct atgtctcttt cttgcaatag cctatgtctc tttcttgcaa tagccttgtc
     1861 tctttctgct gtggtgaatg aagtcaccat ttctttgcta ccagaggtgg gaagtttttg
     1921 tttttgtttt ctcttgtcct ataagctatg gaattagaaa tacttacctg taagtcaact
     1981 gctatcaaaa gcttggatta aaatgataat caaaggata
//
LOCUS       XM_032610670            7878 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arginine-glutamic acid dipeptide repeats
            (RERE), transcript variant X1, mRNA.
ACCESSION   XM_032610670
VERSION     XM_032610670.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7878
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7878
                     /gene="RERE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 25 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742778"
     CDS             623..5251
                     /gene="RERE"
                     /codon_start=1
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform X1"
                     /protein_id="XP_032466561.1"
                     /db_xref="GeneID:116742778"
                     /translation="MTADKDKDKDKEKDRDRDRDREREKRDKARESENSRPRRSCTLE
                     GGAKNYAESDHSEDEDNDNGATTEESTKKTKKKPPKKKSRYERTDTGEITSYITEDDV
                     VYRPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACCRSPPPALCDPPACSLPVAAQP
                     PQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNENDSGRELVITD
                     PVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETR
                     RLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVNDCDLLMYLRAAR
                     SMAAFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESGYDAGKALQRLVKKPVPKLIE
                     KSWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPEAASSRAHR
                     RHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASEDDFDSEDSEQELKGYACRH
                     CFSTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPVDPPPFMFKPVKEEDDGPS
                     GKHSMRTRRSRGSMSTLRSGRKKQPASPDGRASPINEDIRSSGRNSPSAASTSSNDSK
                     AETVKKSAKKVKEEASSPLKSTKRQREKVASDTDEADRTSSKKTKTQEISRPNSPSEG
                     EGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPAL
                     QAPSGAAPAPSSAAPGTAQPPTPGPTPATTAPSQGSPSTSQPPTQPQAPSAPAPHAHV
                     QQAPALHPQRLPSPHPPLQPLTGPAGATPGPPHPQTPLHGQGPPGPHGLQAGPLLQHP
                     GPPQPFGLPPQASQAAAHPHASLQPPASQSALQPPQPPREQPLPPAPLAMPHIKPPPT
                     TPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLM
                     PQSQPLPSSPAQPPVLTQSQSLAPASHPPTGLHQVPPQTPFAQHPFAAAAPPPITPPS
                     CPSTSTPPAGPGPSAQPPCSAPVAAGGSVAGGAACPLPTVQVKEEALDEAEEPESPPP
                     PPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAI
                     EKAKREAEQKAREEREREKEKEKEREREREAERAAQKASSSAHEGRLGDPQLGGPGHM
                     RPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYVPLNPTDPLLA
                     YHMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPAANPM
                     EHFARHGALTIPPAAGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIH
                     AERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPLT
                     AGPHLARFPYPPGTLPSPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSAAHQLQ
                     AMHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQL"
     misc_feature    923..1540
                     /gene="RERE"
                     /note="BAH, or Bromo Adjacent Homology domain, as present
                     in MTA1 and similar proteins. The Metastasis-associated
                     protein MTA1 is part of the NURD (nucleosome remodeling
                     and deacetylating) complex and plays a role in cellular
                     transformation and metastasis. BAH...; Region: BAH_MTA;
                     cd04709"
                     /db_xref="CDD:240060"
     misc_feature    1475..1627
                     /gene="RERE"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1802..1939
                     /gene="RERE"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1805..1807,1895..1900,1904..1909,1913..1921,
                     1925..1933)
                     /gene="RERE"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    2135..2299
                     /gene="RERE"
                     /note="Zinc finger DNA binding domain; binds specifically
                     to DNA consensus sequence [AT]GATA[AG] promoter elements;
                     a subset of family members may also bind protein;
                     zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C;
                     Region: ZnF_GATA; cd00202"
                     /db_xref="CDD:238123"
     misc_feature    order(2138..2140,2147..2149,2204..2206,2213..2215)
                     /gene="RERE"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:238123"
     misc_feature    order(2165..2170,2174..2176,2204..2236,2288..2290,
                     2294..2299)
                     /gene="RERE"
                     /note="DNA-binding region [nucleotide binding]; DNA
                     binding site"
                     /db_xref="CDD:238123"
     misc_feature    2321..5245
                     /gene="RERE"
                     /note="Atrophin-1 family; Region: Atrophin-1; pfam03154"
                     /db_xref="CDD:460830"
ORIGIN      
        1 catagccgag gcgccgccgc tcctacagac gctcgcgagc cgttccccgc gctcctagcc
       61 tcctcttcct cccgcacgcc cgaaacgctc gcccggctcg ggtctcgccc ccgcctccgt
      121 gctcctctcc cctcgctcgc ctcccacatt gtctctgcct cgttttctct cctacttgag
      181 gggggaaaaa aaaatacacc atcatcctcc gggagccccc tcgccctcag aaaaacaaaa
      241 ccagacatga gccttggctc ccgttcctga aggactggcc gagcgcggag cctggtggag
      301 cccgcacgga aggtcacggg agggaagccc ccgcagaccc cggctctgtc cccgcggccg
      361 gccggccctc ggcccgagcc cggcggcccc agccccgcgg gcctcccgcc ccgtcccccc
      421 actttcccag gagccgttcg aacacacctc cgttgatggt gtagcgcgtc cgggggagca
      481 tttttgaaac gttggggttg ttggagtggt cggattttcc ctggaattga gtgagaaatt
      541 cagaagactg aagcccaggc ttactgtcta cctttcacgg aggcccagcc gtgagaggac
      601 agaagaaggc acgtggcgaa tcatgacagc tgataaagac aaagacaaag acaaagagaa
      661 ggaccgggac cgagatcggg accgagagag agagaagaga gacaaggcgc gagagagtga
      721 gaattcaagg ccacgcagga gctgtacctt ggaaggagga gccaaaaatt acgctgagag
      781 tgaccacagc gaagatgagg acaatgacaa tggtgccacc acggaggagt ccacgaagaa
      841 gaccaagaag aagcccccga aaaaaaagtc tcgttacgaa aggacggaca ctggggagat
      901 aacgtcttac atcacggagg atgatgtcgt ctacagacca ggagactgtg tgtatatcga
      961 gagtcggagg ccaaacacac cgtatttcat ctgtagcatc caagacttca aactggtcca
     1021 caactcccag gcctgttgca gatctccacc tcctgctttg tgcgaccccc cagcatgctc
     1081 tctgccggtg gcagcacagc cgccacagca tctttctgaa gccgggagag ggcctgtagg
     1141 gagtaagagg gaccacctac tcatgaacgt caaatggtac taccgtcaat ctgaagttcc
     1201 agattctgtg tatcagcatt tggttcagga tcgacataat gaaaatgact ctggaagaga
     1261 acttgtcata acagacccag ttatcaagaa ccgagagctc ttcatttctg attacgttga
     1321 cacttaccac gctgctgccc ttagagggaa gtgcaacatc tcccattttt ctgacatatt
     1381 tgctgctaga gagtttaaag cccgagtgga ttcatttttc tacatattag gctacaaccc
     1441 tgagacgagg aggctgaaca gtacccaggg agaaattcgt gttggtccta gccatcaggc
     1501 caaacttccc gatttgcaac cattcccttc tcccgatggt gacactgtga cccaacatga
     1561 ggaactggtc tggatgcctg gagttaatga ctgtgacctc cttatgtact tgagggcagc
     1621 aaggagcatg gcggcctttg cagggatgtg tgacggaggc tccacggaag atggctgcgt
     1681 tgcagcctcg cgggatgaca ccaccctcaa cgcactgaac acactccatg aaagcggtta
     1741 tgatgctggc aaagccctgc agcgcctggt gaagaagcct gtgcccaagc tgattgagaa
     1801 gagctggacc gaggacgaag tgaaacgctt cgttaagggg cttaggcagt acggcaagaa
     1861 cttcttccga attcgaaagg agctgcttcc caataaggaa acaggagaac tgatcacctt
     1921 ctattactac tggaagaaaa ccccagaagc agccagctcc cgggctcacc gcaggcaccg
     1981 caggcaggcc gtcttcagga ggattaagac ccgcactgca tccacgcccg tcaacacacc
     2041 ctccagaccc ccgtccagtg aattcttgga cctgagttca gccagtgagg atgacttcga
     2101 cagtgaggac agcgagcagg agctgaaggg ctacgcctgc cgccactgct tcagcaccac
     2161 ttccaaagac tggcaccacg ggggccggga gaacatcctg ctctgtacag actgccgcat
     2221 tcacttcaag aaatacggcg agctcccccc catagagaag cccgtggacc ccccaccatt
     2281 tatgttcaaa cctgtgaaag aggaagacga tgggcccagt gggaaacata gcatgaggac
     2341 acggcggagt cgtggctcga tgtctacact gcgcagtggt cggaagaagc agccagccag
     2401 ccctgatggt cgcgcctcgc ccatcaatga agacatccgc tccagcggcc ggaactcccc
     2461 cagcgctgcc agcacctcca gcaacgacag taaagcagag acggtgaaga agtcggccaa
     2521 gaaggtgaag gaggaagcct cgtcccctct caagagcacc aagcgtcagc gggagaaggt
     2581 ggcctctgat acggatgagg ccgataggac cagctccaag aagacaaaga cccaggagat
     2641 cagccggccc aactcgccgt ccgaaggcga gggagagagc tcagacagcc gcagcgtcaa
     2701 cgatgagggc agcagtgacc ccaaagacat cgaccaggac aatcgtagca cgtcccccag
     2761 catccccagc ccccaggaca acgaaagcga ctccgactcc tcggcccagc agcagatgct
     2821 gcaggcccag cccccggcct tgcaggctcc cagtggggcc gctccagctc cctcgtcggc
     2881 cgcgccgggg accgcccagc cgcccacgcc agggcccacg cccgccacca ccgccccgtc
     2941 acagggctcc ccgtcgacct cccagccccc cacccagccg caggcgccct cagctcctgc
     3001 tccccacgcc cacgtccagc aggcacctgc cctacaccca caacggctgc cctcaccgca
     3061 ccccccgctg cagccgctga ccgggccggc cggcgccacc ccgggcccgc cccaccccca
     3121 gacccccctg catggtcagg gcccgcccgg ccctcacggc ctccaggccg ggccgctgct
     3181 gcagcaccca ggccccccgc agcccttcgg cctccctccg caggcctccc aggcggcggc
     3241 ccaccctcac gcctccctgc agccgcccgc ctctcagtcg gcgttgcagc ccccgcagcc
     3301 ccctcgggag cagcccctgc cacctgcgcc cttggccatg ccccacatca agcccccgcc
     3361 caccacaccc atcccccagc tgccggcgcc ccaggcccac aagcacccgc ctcacctctc
     3421 ggggccctcg cccttctcca tgaacgccaa cctcccgccc cctccggccc tgaagcccct
     3481 gagctccctg tccacgcacc acccgccctc ggcccacccg cctcccctgc agctcatgcc
     3541 ccagagccag cctctgccct cctcccccgc ccagccccct gtgctgaccc agagccagag
     3601 cctggcccct gcctcccacc cccccacggg cctccaccag gtgccccccc agaccccgtt
     3661 cgcccagcac ccctttgccg ccgcggcccc tcctcccatc acccctccga gttgcccctc
     3721 cacctccacc cccccggcgg gtcctggccc ctcggcccag ccgccctgct ctgcccccgt
     3781 cgctgcggga ggcagcgtag ctgggggggc agcctgcccg ctccccaccg tccaggtcaa
     3841 ggaagaggcc ctggacgaag ctgaggagcc cgagagcccc cctccgccgc ctcggagccc
     3901 gtcccctgag cccactgtgg tggacacccc cagccacgcc agccagtctg ccaggttcta
     3961 caaacacctg gaccggggtt acaactcatg tgcgcggaca gacttgtatt tcatgcctct
     4021 ggcggggtcc aagctggcca agaagaggga ggaggccatc gagaaggcca aacgggaggc
     4081 cgagcagaag gcgcgagagg agcgggagcg ggagaaggag aaagagaagg agcgcgagcg
     4141 ggagcgcgag gcggagcggg cggctcagaa ggcgtccagc tctgcgcacg aaggccgcct
     4201 cggcgacccc cagctcggtg gtcccggcca catgcggccc tccttcgagc ccccgcccac
     4261 caccatcgcg gccgttcctc cgtatatcgg gcccgacaca ccggccctcc ggactctgag
     4321 cgagtacgcc cggccccacg tcatgtcgcc caccaaccgt aaccacccct tctacgtgcc
     4381 cctcaacccc accgacccgc tgctggccta ccacatgccc ggcctctaca acgtcgaccc
     4441 caccatccgc gagcgggagc tccgggagcg cgagatccgg gagcgtgaga tccgggagcg
     4501 cgagctgcgg gagcggatga agccgggctt cgaggtgaag cccccggagc tggaccccct
     4561 gcacccggcc gccaacccca tggagcactt cgcccggcac ggcgccctca ccatcccccc
     4621 cgccgccggc ccccaccctt tcgcgtcttt ccaccctggc ctgaacccct tggagagaga
     4681 gagactggcc ctggcgggcc cccagctgcg gcccgaaatg agctacccgg acagactggc
     4741 ggccgagcgc attcacgccg agcgcatggc ctcactgacc agcgaccccc tggcgcggct
     4801 gcagatgttc aacgtgaccc cgcaccacca ccagcactcc cacatccact cgcacctcca
     4861 cctccaccag caggaccctc tccaccaagg ttcagcaggc ccagttcacc cgctggttga
     4921 ccccctgact gctggcccgc acctggctcg cttcccctat ccccctggca ccctccccag
     4981 ccctctgctt ggacagcccc cccatgagca cgagatgctt cgccatccag tttttggcac
     5041 cccctacccc cgagacctgc ctggggccat cccacccccc atgtcggcgg cccaccagct
     5101 gcaggccatg cacgcccagt cggcggagct gcagagactg gccatggagc agcagtggct
     5161 gcacggacac ccgcacatgc atggtggtca ccttccgagt caggaagatt attacagtcg
     5221 actgaagaag gaaggtgaca agcagttata agttatttat ttgttaacgc tggctgtgga
     5281 aaccccagtt cttgggggag aaacaggact ttttacatac aataggagct gcaaaagcaa
     5341 aaagaatatc ttctaaagat ttctttatat atttaaaaac cccacaacta aaaacgtatc
     5401 agcatactag tgttcgtttg tagagaggat tccttgagac tggtttgggt ctccctgcat
     5461 gacagtcccc cagaaactta gtgaggcctg gactggactg aacattcaga aaactcccct
     5521 gcaatcttgg ggtttggctt tagttttctt ttccttcctt gatttcttca gtaggtgcta
     5581 gaatccagtt cacacccttc actgtgcgtg cagacacact cagttgcgtg tgttccaaaa
     5641 cccacaaggt tgccagatag gcagcgtatg agtttggaat ccaagagctg taatttttaa
     5701 aaaatctttt attttaatac attgtaggaa atcttcataa tttgaggaag ttctgcgcat
     5761 ggctttttac gtctgtaaat aaataatttt agaacagcct tttttttctt ccataaacta
     5821 ctattctgat ctattttttc cagccatgtc actaattgtg aattcctacc agctgttgac
     5881 agaatacaga gttgattttt taataaaaag ttatatataa ttatcccttt aattaaaggg
     5941 aacggatggg cgttactagt tacaaacggg caaacgcttg ggactaggtt tgggcgcagc
     6001 agggagcagc caggggtttg cagggacagt gttacaaacc gtttctttgt tgtgctgctt
     6061 tggttttcac ttctgtctgt tcccagcctg tgctttgcca gcggtgcaga catctgttag
     6121 cttgcaccag gagcgcagga gttaaatgtc ccccattctg tctctgaggg atcgaaagca
     6181 catgtttctg tgtgtcagat tgtagatttc cttatagatt tctctgcaca cgcatttgat
     6241 tgtcctgaat gaactgcctt ttttaacatt aacttggaca atttcataaa caaacattct
     6301 agaaaatcca agaaaacgat tccctgcgag ccactcagca catatgcttg ccaaagggat
     6361 ctgttagaaa tctgctttgt cgtgcgtgtc gtcgtttgga tcttcttgtg gtgaggccag
     6421 gccatccttg tcacggcccg aggctgcttt ggagtgaggg agatcccgga gttggtccgg
     6481 ctgcgggtgg cggcctgtgt gttaccccag gaacagggac tcacgtcgga cagggagaca
     6541 cttggcgtcc cgctctcctc ccggaagcag gacgggggtc acagccgtgg acgtggagtg
     6601 agaggcagct ccacctgggg gcaggtggcc cagagagccc gcctcggctt tctgagttgc
     6661 ccgcgagctg cattttctcc agagcagagg gtggggaagt tggaaggaca ttctgcacct
     6721 gttgatcacg ctttctgcca ggacgtgacc ttttctgttc ctcttctctc agcccttcgg
     6781 gggctctttc tgccgtggtg cgcggagttc ccgcctgggg gtcagtggac gtggagcgcg
     6841 tctaggaccg gagccacaga gggggcggga cgagaggctg gcgctttgac ccagaaacca
     6901 gcaggcaata gctcagattc aggttccaga ttcacacttg cctcaagggc atttccagtg
     6961 tccactaaag ccacgttcgg tttccgttgg gacagataga ggatggtttt gtctgttgaa
     7021 aatgttcgta ggttttttct ttcgttttct ctcattccat ttctgcctta actttagctc
     7081 cttgggggga ggcaagctca gatgaacact ttgtcatcgc ttgagtggcc gcgttggcca
     7141 ggggcgtttg tgtccccggg gctagtgacg tgccatcagg gcgggctccg ctctgcggcc
     7201 tccacgcctc tgagccgggc cccttcctgc tggactcggg cgctcctgct gccccggctc
     7261 ctgcacggaa gcccccgcct gctttgctcc ctttgggtgg aacgcgacgc ctcctgccca
     7321 gttatcctcc tttctctcct ctctcgtcca tttccaaaga agagagagag ttgaagtact
     7381 tggaagtctg tacttgaaaa ctgtctgaag gcgttttctc cttaggtttt ggttttctcc
     7441 ccacgtcccc aggtgaagca ctgagattct tccatttaaa aacccacaac ccgaaatcct
     7501 cacctggtca actgcagcgt gtgtcggagg ccccagacct tcacggtgtc tttgaagccc
     7561 gaccccttgg tctccttttg ggtttcctcc ctttgtttgg agttgttttg cttttccgtg
     7621 ttttatgtgt atcttgttca ctgtcgtcgg gttgagcttc acttcgctgt ggcagcagca
     7681 gagcggagtg tgcattctga tttgctacgt ttatatatat cttgaagcta aatgtatata
     7741 tgagtagttt gccatgagat aacacggtgt aaacagagta gacacccaga aattgtgact
     7801 tctgtgttct ctccatctga gtattttgta atttttttga aatattcgtg gacataaata
     7861 aaaacaagct acactaca
//
LOCUS       XM_032610678            7875 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arginine-glutamic acid dipeptide repeats
            (RERE), transcript variant X2, mRNA.
ACCESSION   XM_032610678
VERSION     XM_032610678.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7875
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7875
                     /gene="RERE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 25 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742778"
     CDS             623..5248
                     /gene="RERE"
                     /codon_start=1
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform X2"
                     /protein_id="XP_032466569.1"
                     /db_xref="GeneID:116742778"
                     /translation="MTADKDKDKDKEKDRDRDRDREREKRDKARESENSRPRRSCTLE
                     GGAKNYAESDHSEDEDNDNGATTEESTKKTKKKPPKKKSRYERTDTGEITSYITEDDV
                     VYRPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACCRSPPPALCDPPACSLPVAAQP
                     PQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNENDSGRELVITD
                     PVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETR
                     RLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVNDCDLLMYLRAAR
                     SMAAFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESGYDAGKALQRLVKKPVPKLIE
                     KSWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPEAASSRAHR
                     RHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASEDDFDSEDSEQELKGYACRH
                     CFSTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPVDPPPFMFKPVKEEDDGPS
                     GKHSMRTRRSRGSMSTLRSGRKKQPASPDGRASPINEDIRSSGRNSPSAASTSSNDSK
                     AETVKKSAKKVKEEASSPLKSTKRQREKVASDTDEADRTSSKKTKTQEISRPNSPSEG
                     EGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPAL
                     QAPSGAAPAPSSAAPGTAQPPTPGPTPATTAPSQGSPSTSQPPTQPQAPSAPAPHAHV
                     QQAPALHPQRLPSPHPPLQPLTGPAGATPGPPHPQTPLHGQGPPGPHGLQAGPLLQHP
                     GPPQPFGLPPQASQAAAHPHASLQPPASQSALQPPQPPREQPLPPAPLAMPHIKPPPT
                     TPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLM
                     PQSQPLPSSPAQPPVLTQSQSLAPASHPPTGLHQVPPQTPFAQHPFAAAAPPPITPPS
                     CPSTSTPPAGPGPSAQPPCSAPVAAGGSVAGGAACPLPTVQVKEEALDEAEEPESPPP
                     PPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAI
                     EKAKREAEQKAREEREREKEKEKEREREREAERAAKASSSAHEGRLGDPQLGGPGHMR
                     PSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYVPLNPTDPLLAY
                     HMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPAANPME
                     HFARHGALTIPPAAGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHA
                     ERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPLTA
                     GPHLARFPYPPGTLPSPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSAAHQLQA
                     MHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQL"
     misc_feature    923..1540
                     /gene="RERE"
                     /note="BAH, or Bromo Adjacent Homology domain, as present
                     in MTA1 and similar proteins. The Metastasis-associated
                     protein MTA1 is part of the NURD (nucleosome remodeling
                     and deacetylating) complex and plays a role in cellular
                     transformation and metastasis. BAH...; Region: BAH_MTA;
                     cd04709"
                     /db_xref="CDD:240060"
     misc_feature    1475..1627
                     /gene="RERE"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1802..1939
                     /gene="RERE"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1805..1807,1895..1900,1904..1909,1913..1921,
                     1925..1933)
                     /gene="RERE"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    2135..2299
                     /gene="RERE"
                     /note="Zinc finger DNA binding domain; binds specifically
                     to DNA consensus sequence [AT]GATA[AG] promoter elements;
                     a subset of family members may also bind protein;
                     zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C;
                     Region: ZnF_GATA; cd00202"
                     /db_xref="CDD:238123"
     misc_feature    order(2138..2140,2147..2149,2204..2206,2213..2215)
                     /gene="RERE"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:238123"
     misc_feature    order(2165..2170,2174..2176,2204..2236,2288..2290,
                     2294..2299)
                     /gene="RERE"
                     /note="DNA-binding region [nucleotide binding]; DNA
                     binding site"
                     /db_xref="CDD:238123"
     misc_feature    2321..5242
                     /gene="RERE"
                     /note="Atrophin-1 family; Region: Atrophin-1; pfam03154"
                     /db_xref="CDD:460830"
ORIGIN      
        1 catagccgag gcgccgccgc tcctacagac gctcgcgagc cgttccccgc gctcctagcc
       61 tcctcttcct cccgcacgcc cgaaacgctc gcccggctcg ggtctcgccc ccgcctccgt
      121 gctcctctcc cctcgctcgc ctcccacatt gtctctgcct cgttttctct cctacttgag
      181 gggggaaaaa aaaatacacc atcatcctcc gggagccccc tcgccctcag aaaaacaaaa
      241 ccagacatga gccttggctc ccgttcctga aggactggcc gagcgcggag cctggtggag
      301 cccgcacgga aggtcacggg agggaagccc ccgcagaccc cggctctgtc cccgcggccg
      361 gccggccctc ggcccgagcc cggcggcccc agccccgcgg gcctcccgcc ccgtcccccc
      421 actttcccag gagccgttcg aacacacctc cgttgatggt gtagcgcgtc cgggggagca
      481 tttttgaaac gttggggttg ttggagtggt cggattttcc ctggaattga gtgagaaatt
      541 cagaagactg aagcccaggc ttactgtcta cctttcacgg aggcccagcc gtgagaggac
      601 agaagaaggc acgtggcgaa tcatgacagc tgataaagac aaagacaaag acaaagagaa
      661 ggaccgggac cgagatcggg accgagagag agagaagaga gacaaggcgc gagagagtga
      721 gaattcaagg ccacgcagga gctgtacctt ggaaggagga gccaaaaatt acgctgagag
      781 tgaccacagc gaagatgagg acaatgacaa tggtgccacc acggaggagt ccacgaagaa
      841 gaccaagaag aagcccccga aaaaaaagtc tcgttacgaa aggacggaca ctggggagat
      901 aacgtcttac atcacggagg atgatgtcgt ctacagacca ggagactgtg tgtatatcga
      961 gagtcggagg ccaaacacac cgtatttcat ctgtagcatc caagacttca aactggtcca
     1021 caactcccag gcctgttgca gatctccacc tcctgctttg tgcgaccccc cagcatgctc
     1081 tctgccggtg gcagcacagc cgccacagca tctttctgaa gccgggagag ggcctgtagg
     1141 gagtaagagg gaccacctac tcatgaacgt caaatggtac taccgtcaat ctgaagttcc
     1201 agattctgtg tatcagcatt tggttcagga tcgacataat gaaaatgact ctggaagaga
     1261 acttgtcata acagacccag ttatcaagaa ccgagagctc ttcatttctg attacgttga
     1321 cacttaccac gctgctgccc ttagagggaa gtgcaacatc tcccattttt ctgacatatt
     1381 tgctgctaga gagtttaaag cccgagtgga ttcatttttc tacatattag gctacaaccc
     1441 tgagacgagg aggctgaaca gtacccaggg agaaattcgt gttggtccta gccatcaggc
     1501 caaacttccc gatttgcaac cattcccttc tcccgatggt gacactgtga cccaacatga
     1561 ggaactggtc tggatgcctg gagttaatga ctgtgacctc cttatgtact tgagggcagc
     1621 aaggagcatg gcggcctttg cagggatgtg tgacggaggc tccacggaag atggctgcgt
     1681 tgcagcctcg cgggatgaca ccaccctcaa cgcactgaac acactccatg aaagcggtta
     1741 tgatgctggc aaagccctgc agcgcctggt gaagaagcct gtgcccaagc tgattgagaa
     1801 gagctggacc gaggacgaag tgaaacgctt cgttaagggg cttaggcagt acggcaagaa
     1861 cttcttccga attcgaaagg agctgcttcc caataaggaa acaggagaac tgatcacctt
     1921 ctattactac tggaagaaaa ccccagaagc agccagctcc cgggctcacc gcaggcaccg
     1981 caggcaggcc gtcttcagga ggattaagac ccgcactgca tccacgcccg tcaacacacc
     2041 ctccagaccc ccgtccagtg aattcttgga cctgagttca gccagtgagg atgacttcga
     2101 cagtgaggac agcgagcagg agctgaaggg ctacgcctgc cgccactgct tcagcaccac
     2161 ttccaaagac tggcaccacg ggggccggga gaacatcctg ctctgtacag actgccgcat
     2221 tcacttcaag aaatacggcg agctcccccc catagagaag cccgtggacc ccccaccatt
     2281 tatgttcaaa cctgtgaaag aggaagacga tgggcccagt gggaaacata gcatgaggac
     2341 acggcggagt cgtggctcga tgtctacact gcgcagtggt cggaagaagc agccagccag
     2401 ccctgatggt cgcgcctcgc ccatcaatga agacatccgc tccagcggcc ggaactcccc
     2461 cagcgctgcc agcacctcca gcaacgacag taaagcagag acggtgaaga agtcggccaa
     2521 gaaggtgaag gaggaagcct cgtcccctct caagagcacc aagcgtcagc gggagaaggt
     2581 ggcctctgat acggatgagg ccgataggac cagctccaag aagacaaaga cccaggagat
     2641 cagccggccc aactcgccgt ccgaaggcga gggagagagc tcagacagcc gcagcgtcaa
     2701 cgatgagggc agcagtgacc ccaaagacat cgaccaggac aatcgtagca cgtcccccag
     2761 catccccagc ccccaggaca acgaaagcga ctccgactcc tcggcccagc agcagatgct
     2821 gcaggcccag cccccggcct tgcaggctcc cagtggggcc gctccagctc cctcgtcggc
     2881 cgcgccgggg accgcccagc cgcccacgcc agggcccacg cccgccacca ccgccccgtc
     2941 acagggctcc ccgtcgacct cccagccccc cacccagccg caggcgccct cagctcctgc
     3001 tccccacgcc cacgtccagc aggcacctgc cctacaccca caacggctgc cctcaccgca
     3061 ccccccgctg cagccgctga ccgggccggc cggcgccacc ccgggcccgc cccaccccca
     3121 gacccccctg catggtcagg gcccgcccgg ccctcacggc ctccaggccg ggccgctgct
     3181 gcagcaccca ggccccccgc agcccttcgg cctccctccg caggcctccc aggcggcggc
     3241 ccaccctcac gcctccctgc agccgcccgc ctctcagtcg gcgttgcagc ccccgcagcc
     3301 ccctcgggag cagcccctgc cacctgcgcc cttggccatg ccccacatca agcccccgcc
     3361 caccacaccc atcccccagc tgccggcgcc ccaggcccac aagcacccgc ctcacctctc
     3421 ggggccctcg cccttctcca tgaacgccaa cctcccgccc cctccggccc tgaagcccct
     3481 gagctccctg tccacgcacc acccgccctc ggcccacccg cctcccctgc agctcatgcc
     3541 ccagagccag cctctgccct cctcccccgc ccagccccct gtgctgaccc agagccagag
     3601 cctggcccct gcctcccacc cccccacggg cctccaccag gtgccccccc agaccccgtt
     3661 cgcccagcac ccctttgccg ccgcggcccc tcctcccatc acccctccga gttgcccctc
     3721 cacctccacc cccccggcgg gtcctggccc ctcggcccag ccgccctgct ctgcccccgt
     3781 cgctgcggga ggcagcgtag ctgggggggc agcctgcccg ctccccaccg tccaggtcaa
     3841 ggaagaggcc ctggacgaag ctgaggagcc cgagagcccc cctccgccgc ctcggagccc
     3901 gtcccctgag cccactgtgg tggacacccc cagccacgcc agccagtctg ccaggttcta
     3961 caaacacctg gaccggggtt acaactcatg tgcgcggaca gacttgtatt tcatgcctct
     4021 ggcggggtcc aagctggcca agaagaggga ggaggccatc gagaaggcca aacgggaggc
     4081 cgagcagaag gcgcgagagg agcgggagcg ggagaaggag aaagagaagg agcgcgagcg
     4141 ggagcgcgag gcggagcggg cggctaaggc gtccagctct gcgcacgaag gccgcctcgg
     4201 cgacccccag ctcggtggtc ccggccacat gcggccctcc ttcgagcccc cgcccaccac
     4261 catcgcggcc gttcctccgt atatcgggcc cgacacaccg gccctccgga ctctgagcga
     4321 gtacgcccgg ccccacgtca tgtcgcccac caaccgtaac caccccttct acgtgcccct
     4381 caaccccacc gacccgctgc tggcctacca catgcccggc ctctacaacg tcgaccccac
     4441 catccgcgag cgggagctcc gggagcgcga gatccgggag cgtgagatcc gggagcgcga
     4501 gctgcgggag cggatgaagc cgggcttcga ggtgaagccc ccggagctgg accccctgca
     4561 cccggccgcc aaccccatgg agcacttcgc ccggcacggc gccctcacca tcccccccgc
     4621 cgccggcccc caccctttcg cgtctttcca ccctggcctg aaccccttgg agagagagag
     4681 actggccctg gcgggccccc agctgcggcc cgaaatgagc tacccggaca gactggcggc
     4741 cgagcgcatt cacgccgagc gcatggcctc actgaccagc gaccccctgg cgcggctgca
     4801 gatgttcaac gtgaccccgc accaccacca gcactcccac atccactcgc acctccacct
     4861 ccaccagcag gaccctctcc accaaggttc agcaggccca gttcacccgc tggttgaccc
     4921 cctgactgct ggcccgcacc tggctcgctt cccctatccc cctggcaccc tccccagccc
     4981 tctgcttgga cagccccccc atgagcacga gatgcttcgc catccagttt ttggcacccc
     5041 ctacccccga gacctgcctg gggccatccc accccccatg tcggcggccc accagctgca
     5101 ggccatgcac gcccagtcgg cggagctgca gagactggcc atggagcagc agtggctgca
     5161 cggacacccg cacatgcatg gtggtcacct tccgagtcag gaagattatt acagtcgact
     5221 gaagaaggaa ggtgacaagc agttataagt tatttatttg ttaacgctgg ctgtggaaac
     5281 cccagttctt gggggagaaa caggactttt tacatacaat aggagctgca aaagcaaaaa
     5341 gaatatcttc taaagatttc tttatatatt taaaaacccc acaactaaaa acgtatcagc
     5401 atactagtgt tcgtttgtag agaggattcc ttgagactgg tttgggtctc cctgcatgac
     5461 agtcccccag aaacttagtg aggcctggac tggactgaac attcagaaaa ctcccctgca
     5521 atcttggggt ttggctttag ttttcttttc cttccttgat ttcttcagta ggtgctagaa
     5581 tccagttcac acccttcact gtgcgtgcag acacactcag ttgcgtgtgt tccaaaaccc
     5641 acaaggttgc cagataggca gcgtatgagt ttggaatcca agagctgtaa tttttaaaaa
     5701 atcttttatt ttaatacatt gtaggaaatc ttcataattt gaggaagttc tgcgcatggc
     5761 tttttacgtc tgtaaataaa taattttaga acagcctttt ttttcttcca taaactacta
     5821 ttctgatcta ttttttccag ccatgtcact aattgtgaat tcctaccagc tgttgacaga
     5881 atacagagtt gattttttaa taaaaagtta tatataatta tccctttaat taaagggaac
     5941 ggatgggcgt tactagttac aaacgggcaa acgcttggga ctaggtttgg gcgcagcagg
     6001 gagcagccag gggtttgcag ggacagtgtt acaaaccgtt tctttgttgt gctgctttgg
     6061 ttttcacttc tgtctgttcc cagcctgtgc tttgccagcg gtgcagacat ctgttagctt
     6121 gcaccaggag cgcaggagtt aaatgtcccc cattctgtct ctgagggatc gaaagcacat
     6181 gtttctgtgt gtcagattgt agatttcctt atagatttct ctgcacacgc atttgattgt
     6241 cctgaatgaa ctgccttttt taacattaac ttggacaatt tcataaacaa acattctaga
     6301 aaatccaaga aaacgattcc ctgcgagcca ctcagcacat atgcttgcca aagggatctg
     6361 ttagaaatct gctttgtcgt gcgtgtcgtc gtttggatct tcttgtggtg aggccaggcc
     6421 atccttgtca cggcccgagg ctgctttgga gtgagggaga tcccggagtt ggtccggctg
     6481 cgggtggcgg cctgtgtgtt accccaggaa cagggactca cgtcggacag ggagacactt
     6541 ggcgtcccgc tctcctcccg gaagcaggac gggggtcaca gccgtggacg tggagtgaga
     6601 ggcagctcca cctgggggca ggtggcccag agagcccgcc tcggctttct gagttgcccg
     6661 cgagctgcat tttctccaga gcagagggtg gggaagttgg aaggacattc tgcacctgtt
     6721 gatcacgctt tctgccagga cgtgaccttt tctgttcctc ttctctcagc ccttcggggg
     6781 ctctttctgc cgtggtgcgc ggagttcccg cctgggggtc agtggacgtg gagcgcgtct
     6841 aggaccggag ccacagaggg ggcgggacga gaggctggcg ctttgaccca gaaaccagca
     6901 ggcaatagct cagattcagg ttccagattc acacttgcct caagggcatt tccagtgtcc
     6961 actaaagcca cgttcggttt ccgttgggac agatagagga tggttttgtc tgttgaaaat
     7021 gttcgtaggt tttttctttc gttttctctc attccatttc tgccttaact ttagctcctt
     7081 ggggggaggc aagctcagat gaacactttg tcatcgcttg agtggccgcg ttggccaggg
     7141 gcgtttgtgt ccccggggct agtgacgtgc catcagggcg ggctccgctc tgcggcctcc
     7201 acgcctctga gccgggcccc ttcctgctgg actcgggcgc tcctgctgcc ccggctcctg
     7261 cacggaagcc cccgcctgct ttgctccctt tgggtggaac gcgacgcctc ctgcccagtt
     7321 atcctccttt ctctcctctc tcgtccattt ccaaagaaga gagagagttg aagtacttgg
     7381 aagtctgtac ttgaaaactg tctgaaggcg ttttctcctt aggttttggt tttctcccca
     7441 cgtccccagg tgaagcactg agattcttcc atttaaaaac ccacaacccg aaatcctcac
     7501 ctggtcaact gcagcgtgtg tcggaggccc cagaccttca cggtgtcttt gaagcccgac
     7561 cccttggtct ccttttgggt ttcctccctt tgtttggagt tgttttgctt ttccgtgttt
     7621 tatgtgtatc ttgttcactg tcgtcgggtt gagcttcact tcgctgtggc agcagcagag
     7681 cggagtgtgc attctgattt gctacgttta tatatatctt gaagctaaat gtatatatga
     7741 gtagtttgcc atgagataac acggtgtaaa cagagtagac acccagaaat tgtgacttct
     7801 gtgttctctc catctgagta ttttgtaatt tttttgaaat attcgtggac ataaataaaa
     7861 acaagctaca ctaca
//
LOCUS       XM_032610681            7752 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arginine-glutamic acid dipeptide repeats
            (RERE), transcript variant X3, mRNA.
ACCESSION   XM_032610681
VERSION     XM_032610681.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7752
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7752
                     /gene="RERE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 25 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742778"
     CDS             623..5125
                     /gene="RERE"
                     /codon_start=1
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform X3"
                     /protein_id="XP_032466572.1"
                     /db_xref="GeneID:116742778"
                     /translation="MTADKDKDKDKEKDRDRDRDREREKRDKARESENSRPRRSCTLE
                     GGAKNYAESDHSEDEDNDNGATTEESTKKTKKKPPKKKSRYERTDTGEITSYITEDDV
                     VYRPGDCVYIESRRPNTPYFICSIQDFKLSKRDHLLMNVKWYYRQSEVPDSVYQHLVQ
                     DRHNENDSGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKA
                     RVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWM
                     PGVNDCDLLMYLRAARSMAAFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESGYDAG
                     KALQRLVKKPVPKLIEKSWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY
                     YYWKKTPEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASEDDF
                     DSEDSEQELKGYACRHCFSTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPVDP
                     PPFMFKPVKEEDDGPSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGRASPINEDIRSS
                     GRNSPSAASTSSNDSKAETVKKSAKKVKEEASSPLKSTKRQREKVASDTDEADRTSSK
                     KTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDS
                     DSSAQQQMLQAQPPALQAPSGAAPAPSSAAPGTAQPPTPGPTPATTAPSQGSPSTSQP
                     PTQPQAPSAPAPHAHVQQAPALHPQRLPSPHPPLQPLTGPAGATPGPPHPQTPLHGQG
                     PPGPHGLQAGPLLQHPGPPQPFGLPPQASQAAAHPHASLQPPASQSALQPPQPPREQP
                     LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSL
                     STHHPPSAHPPPLQLMPQSQPLPSSPAQPPVLTQSQSLAPASHPPTGLHQVPPQTPFA
                     QHPFAAAAPPPITPPSCPSTSTPPAGPGPSAQPPCSAPVAAGGSVAGGAACPLPTVQV
                     KEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYF
                     MPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREAERAAQKASSSA
                     HEGRLGDPQLGGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNR
                     NHPFYVPLNPTDPLLAYHMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFE
                     VKPPELDPLHPAANPMEHFARHGALTIPPAAGPHPFASFHPGLNPLERERLALAGPQL
                     RPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPL
                     HQGSAGPVHPLVDPLTAGPHLARFPYPPGTLPSPLLGQPPHEHEMLRHPVFGTPYPRD
                     LPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKK
                     EGDKQL"
     misc_feature    923..1414
                     /gene="RERE"
                     /note="BAH, or Bromo Adjacent Homology domain, as present
                     in MTA1 and similar proteins. The Metastasis-associated
                     protein MTA1 is part of the NURD (nucleosome remodeling
                     and deacetylating) complex and plays a role in cellular
                     transformation and metastasis. BAH...; Region: BAH_MTA;
                     cd04709"
                     /db_xref="CDD:240060"
     misc_feature    1349..1501
                     /gene="RERE"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1676..1813
                     /gene="RERE"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1679..1681,1769..1774,1778..1783,1787..1795,
                     1799..1807)
                     /gene="RERE"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    2009..2173
                     /gene="RERE"
                     /note="Zinc finger DNA binding domain; binds specifically
                     to DNA consensus sequence [AT]GATA[AG] promoter elements;
                     a subset of family members may also bind protein;
                     zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C;
                     Region: ZnF_GATA; cd00202"
                     /db_xref="CDD:238123"
     misc_feature    order(2012..2014,2021..2023,2078..2080,2087..2089)
                     /gene="RERE"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:238123"
     misc_feature    order(2039..2044,2048..2050,2078..2110,2162..2164,
                     2168..2173)
                     /gene="RERE"
                     /note="DNA-binding region [nucleotide binding]; DNA
                     binding site"
                     /db_xref="CDD:238123"
     misc_feature    2195..5119
                     /gene="RERE"
                     /note="Atrophin-1 family; Region: Atrophin-1; pfam03154"
                     /db_xref="CDD:460830"
ORIGIN      
        1 catagccgag gcgccgccgc tcctacagac gctcgcgagc cgttccccgc gctcctagcc
       61 tcctcttcct cccgcacgcc cgaaacgctc gcccggctcg ggtctcgccc ccgcctccgt
      121 gctcctctcc cctcgctcgc ctcccacatt gtctctgcct cgttttctct cctacttgag
      181 gggggaaaaa aaaatacacc atcatcctcc gggagccccc tcgccctcag aaaaacaaaa
      241 ccagacatga gccttggctc ccgttcctga aggactggcc gagcgcggag cctggtggag
      301 cccgcacgga aggtcacggg agggaagccc ccgcagaccc cggctctgtc cccgcggccg
      361 gccggccctc ggcccgagcc cggcggcccc agccccgcgg gcctcccgcc ccgtcccccc
      421 actttcccag gagccgttcg aacacacctc cgttgatggt gtagcgcgtc cgggggagca
      481 tttttgaaac gttggggttg ttggagtggt cggattttcc ctggaattga gtgagaaatt
      541 cagaagactg aagcccaggc ttactgtcta cctttcacgg aggcccagcc gtgagaggac
      601 agaagaaggc acgtggcgaa tcatgacagc tgataaagac aaagacaaag acaaagagaa
      661 ggaccgggac cgagatcggg accgagagag agagaagaga gacaaggcgc gagagagtga
      721 gaattcaagg ccacgcagga gctgtacctt ggaaggagga gccaaaaatt acgctgagag
      781 tgaccacagc gaagatgagg acaatgacaa tggtgccacc acggaggagt ccacgaagaa
      841 gaccaagaag aagcccccga aaaaaaagtc tcgttacgaa aggacggaca ctggggagat
      901 aacgtcttac atcacggagg atgatgtcgt ctacagacca ggagactgtg tgtatatcga
      961 gagtcggagg ccaaacacac cgtatttcat ctgtagcatc caagacttca aactgagtaa
     1021 gagggaccac ctactcatga acgtcaaatg gtactaccgt caatctgaag ttccagattc
     1081 tgtgtatcag catttggttc aggatcgaca taatgaaaat gactctggaa gagaacttgt
     1141 cataacagac ccagttatca agaaccgaga gctcttcatt tctgattacg ttgacactta
     1201 ccacgctgct gcccttagag ggaagtgcaa catctcccat ttttctgaca tatttgctgc
     1261 tagagagttt aaagcccgag tggattcatt tttctacata ttaggctaca accctgagac
     1321 gaggaggctg aacagtaccc agggagaaat tcgtgttggt cctagccatc aggccaaact
     1381 tcccgatttg caaccattcc cttctcccga tggtgacact gtgacccaac atgaggaact
     1441 ggtctggatg cctggagtta atgactgtga cctccttatg tacttgaggg cagcaaggag
     1501 catggcggcc tttgcaggga tgtgtgacgg aggctccacg gaagatggct gcgttgcagc
     1561 ctcgcgggat gacaccaccc tcaacgcact gaacacactc catgaaagcg gttatgatgc
     1621 tggcaaagcc ctgcagcgcc tggtgaagaa gcctgtgccc aagctgattg agaagagctg
     1681 gaccgaggac gaagtgaaac gcttcgttaa ggggcttagg cagtacggca agaacttctt
     1741 ccgaattcga aaggagctgc ttcccaataa ggaaacagga gaactgatca ccttctatta
     1801 ctactggaag aaaaccccag aagcagccag ctcccgggct caccgcaggc accgcaggca
     1861 ggccgtcttc aggaggatta agacccgcac tgcatccacg cccgtcaaca caccctccag
     1921 acccccgtcc agtgaattct tggacctgag ttcagccagt gaggatgact tcgacagtga
     1981 ggacagcgag caggagctga agggctacgc ctgccgccac tgcttcagca ccacttccaa
     2041 agactggcac cacgggggcc gggagaacat cctgctctgt acagactgcc gcattcactt
     2101 caagaaatac ggcgagctcc cccccataga gaagcccgtg gaccccccac catttatgtt
     2161 caaacctgtg aaagaggaag acgatgggcc cagtgggaaa catagcatga ggacacggcg
     2221 gagtcgtggc tcgatgtcta cactgcgcag tggtcggaag aagcagccag ccagccctga
     2281 tggtcgcgcc tcgcccatca atgaagacat ccgctccagc ggccggaact cccccagcgc
     2341 tgccagcacc tccagcaacg acagtaaagc agagacggtg aagaagtcgg ccaagaaggt
     2401 gaaggaggaa gcctcgtccc ctctcaagag caccaagcgt cagcgggaga aggtggcctc
     2461 tgatacggat gaggccgata ggaccagctc caagaagaca aagacccagg agatcagccg
     2521 gcccaactcg ccgtccgaag gcgagggaga gagctcagac agccgcagcg tcaacgatga
     2581 gggcagcagt gaccccaaag acatcgacca ggacaatcgt agcacgtccc ccagcatccc
     2641 cagcccccag gacaacgaaa gcgactccga ctcctcggcc cagcagcaga tgctgcaggc
     2701 ccagcccccg gccttgcagg ctcccagtgg ggccgctcca gctccctcgt cggccgcgcc
     2761 ggggaccgcc cagccgccca cgccagggcc cacgcccgcc accaccgccc cgtcacaggg
     2821 ctccccgtcg acctcccagc cccccaccca gccgcaggcg ccctcagctc ctgctcccca
     2881 cgcccacgtc cagcaggcac ctgccctaca cccacaacgg ctgccctcac cgcacccccc
     2941 gctgcagccg ctgaccgggc cggccggcgc caccccgggc ccgccccacc cccagacccc
     3001 cctgcatggt cagggcccgc ccggccctca cggcctccag gccgggccgc tgctgcagca
     3061 cccaggcccc ccgcagccct tcggcctccc tccgcaggcc tcccaggcgg cggcccaccc
     3121 tcacgcctcc ctgcagccgc ccgcctctca gtcggcgttg cagcccccgc agccccctcg
     3181 ggagcagccc ctgccacctg cgcccttggc catgccccac atcaagcccc cgcccaccac
     3241 acccatcccc cagctgccgg cgccccaggc ccacaagcac ccgcctcacc tctcggggcc
     3301 ctcgcccttc tccatgaacg ccaacctccc gccccctccg gccctgaagc ccctgagctc
     3361 cctgtccacg caccacccgc cctcggccca cccgcctccc ctgcagctca tgccccagag
     3421 ccagcctctg ccctcctccc ccgcccagcc ccctgtgctg acccagagcc agagcctggc
     3481 ccctgcctcc caccccccca cgggcctcca ccaggtgccc ccccagaccc cgttcgccca
     3541 gcaccccttt gccgccgcgg cccctcctcc catcacccct ccgagttgcc cctccacctc
     3601 cacccccccg gcgggtcctg gcccctcggc ccagccgccc tgctctgccc ccgtcgctgc
     3661 gggaggcagc gtagctgggg gggcagcctg cccgctcccc accgtccagg tcaaggaaga
     3721 ggccctggac gaagctgagg agcccgagag cccccctccg ccgcctcgga gcccgtcccc
     3781 tgagcccact gtggtggaca cccccagcca cgccagccag tctgccaggt tctacaaaca
     3841 cctggaccgg ggttacaact catgtgcgcg gacagacttg tatttcatgc ctctggcggg
     3901 gtccaagctg gccaagaaga gggaggaggc catcgagaag gccaaacggg aggccgagca
     3961 gaaggcgcga gaggagcggg agcgggagaa ggagaaagag aaggagcgcg agcgggagcg
     4021 cgaggcggag cgggcggctc agaaggcgtc cagctctgcg cacgaaggcc gcctcggcga
     4081 cccccagctc ggtggtcccg gccacatgcg gccctccttc gagcccccgc ccaccaccat
     4141 cgcggccgtt cctccgtata tcgggcccga cacaccggcc ctccggactc tgagcgagta
     4201 cgcccggccc cacgtcatgt cgcccaccaa ccgtaaccac cccttctacg tgcccctcaa
     4261 ccccaccgac ccgctgctgg cctaccacat gcccggcctc tacaacgtcg accccaccat
     4321 ccgcgagcgg gagctccggg agcgcgagat ccgggagcgt gagatccggg agcgcgagct
     4381 gcgggagcgg atgaagccgg gcttcgaggt gaagcccccg gagctggacc ccctgcaccc
     4441 ggccgccaac cccatggagc acttcgcccg gcacggcgcc ctcaccatcc cccccgccgc
     4501 cggcccccac cctttcgcgt ctttccaccc tggcctgaac cccttggaga gagagagact
     4561 ggccctggcg ggcccccagc tgcggcccga aatgagctac ccggacagac tggcggccga
     4621 gcgcattcac gccgagcgca tggcctcact gaccagcgac cccctggcgc ggctgcagat
     4681 gttcaacgtg accccgcacc accaccagca ctcccacatc cactcgcacc tccacctcca
     4741 ccagcaggac cctctccacc aaggttcagc aggcccagtt cacccgctgg ttgaccccct
     4801 gactgctggc ccgcacctgg ctcgcttccc ctatccccct ggcaccctcc ccagccctct
     4861 gcttggacag cccccccatg agcacgagat gcttcgccat ccagtttttg gcacccccta
     4921 cccccgagac ctgcctgggg ccatcccacc ccccatgtcg gcggcccacc agctgcaggc
     4981 catgcacgcc cagtcggcgg agctgcagag actggccatg gagcagcagt ggctgcacgg
     5041 acacccgcac atgcatggtg gtcaccttcc gagtcaggaa gattattaca gtcgactgaa
     5101 gaaggaaggt gacaagcagt tataagttat ttatttgtta acgctggctg tggaaacccc
     5161 agttcttggg ggagaaacag gactttttac atacaatagg agctgcaaaa gcaaaaagaa
     5221 tatcttctaa agatttcttt atatatttaa aaaccccaca actaaaaacg tatcagcata
     5281 ctagtgttcg tttgtagaga ggattccttg agactggttt gggtctccct gcatgacagt
     5341 cccccagaaa cttagtgagg cctggactgg actgaacatt cagaaaactc ccctgcaatc
     5401 ttggggtttg gctttagttt tcttttcctt ccttgatttc ttcagtaggt gctagaatcc
     5461 agttcacacc cttcactgtg cgtgcagaca cactcagttg cgtgtgttcc aaaacccaca
     5521 aggttgccag ataggcagcg tatgagtttg gaatccaaga gctgtaattt ttaaaaaatc
     5581 ttttatttta atacattgta ggaaatcttc ataatttgag gaagttctgc gcatggcttt
     5641 ttacgtctgt aaataaataa ttttagaaca gccttttttt tcttccataa actactattc
     5701 tgatctattt tttccagcca tgtcactaat tgtgaattcc taccagctgt tgacagaata
     5761 cagagttgat tttttaataa aaagttatat ataattatcc ctttaattaa agggaacgga
     5821 tgggcgttac tagttacaaa cgggcaaacg cttgggacta ggtttgggcg cagcagggag
     5881 cagccagggg tttgcaggga cagtgttaca aaccgtttct ttgttgtgct gctttggttt
     5941 tcacttctgt ctgttcccag cctgtgcttt gccagcggtg cagacatctg ttagcttgca
     6001 ccaggagcgc aggagttaaa tgtcccccat tctgtctctg agggatcgaa agcacatgtt
     6061 tctgtgtgtc agattgtaga tttccttata gatttctctg cacacgcatt tgattgtcct
     6121 gaatgaactg ccttttttaa cattaacttg gacaatttca taaacaaaca ttctagaaaa
     6181 tccaagaaaa cgattccctg cgagccactc agcacatatg cttgccaaag ggatctgtta
     6241 gaaatctgct ttgtcgtgcg tgtcgtcgtt tggatcttct tgtggtgagg ccaggccatc
     6301 cttgtcacgg cccgaggctg ctttggagtg agggagatcc cggagttggt ccggctgcgg
     6361 gtggcggcct gtgtgttacc ccaggaacag ggactcacgt cggacaggga gacacttggc
     6421 gtcccgctct cctcccggaa gcaggacggg ggtcacagcc gtggacgtgg agtgagaggc
     6481 agctccacct gggggcaggt ggcccagaga gcccgcctcg gctttctgag ttgcccgcga
     6541 gctgcatttt ctccagagca gagggtgggg aagttggaag gacattctgc acctgttgat
     6601 cacgctttct gccaggacgt gaccttttct gttcctcttc tctcagccct tcgggggctc
     6661 tttctgccgt ggtgcgcgga gttcccgcct gggggtcagt ggacgtggag cgcgtctagg
     6721 accggagcca cagagggggc gggacgagag gctggcgctt tgacccagaa accagcaggc
     6781 aatagctcag attcaggttc cagattcaca cttgcctcaa gggcatttcc agtgtccact
     6841 aaagccacgt tcggtttccg ttgggacaga tagaggatgg ttttgtctgt tgaaaatgtt
     6901 cgtaggtttt ttctttcgtt ttctctcatt ccatttctgc cttaacttta gctccttggg
     6961 gggaggcaag ctcagatgaa cactttgtca tcgcttgagt ggccgcgttg gccaggggcg
     7021 tttgtgtccc cggggctagt gacgtgccat cagggcgggc tccgctctgc ggcctccacg
     7081 cctctgagcc gggccccttc ctgctggact cgggcgctcc tgctgccccg gctcctgcac
     7141 ggaagccccc gcctgctttg ctccctttgg gtggaacgcg acgcctcctg cccagttatc
     7201 ctcctttctc tcctctctcg tccatttcca aagaagagag agagttgaag tacttggaag
     7261 tctgtacttg aaaactgtct gaaggcgttt tctccttagg ttttggtttt ctccccacgt
     7321 ccccaggtga agcactgaga ttcttccatt taaaaaccca caacccgaaa tcctcacctg
     7381 gtcaactgca gcgtgtgtcg gaggccccag accttcacgg tgtctttgaa gcccgacccc
     7441 ttggtctcct tttgggtttc ctccctttgt ttggagttgt tttgcttttc cgtgttttat
     7501 gtgtatcttg ttcactgtcg tcgggttgag cttcacttcg ctgtggcagc agcagagcgg
     7561 agtgtgcatt ctgatttgct acgtttatat atatcttgaa gctaaatgta tatatgagta
     7621 gtttgccatg agataacacg gtgtaaacag agtagacacc cagaaattgt gacttctgtg
     7681 ttctctccat ctgagtattt tgtaattttt ttgaaatatt cgtggacata aataaaaaca
     7741 agctacacta ca
//
LOCUS       XM_032610682            6909 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arginine-glutamic acid dipeptide repeats
            (RERE), transcript variant X4, mRNA.
ACCESSION   XM_032610682
VERSION     XM_032610682.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6909
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6909
                     /gene="RERE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 25 long SRA reads, 8
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742778"
     CDS             455..4282
                     /gene="RERE"
                     /codon_start=1
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform X4"
                     /protein_id="XP_032466573.1"
                     /db_xref="GeneID:116742778"
                     /translation="MDHAFSPCRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQ
                     HEELVWMPGVNDCDLLMYLRAARSMAAFAGMCDGGSTEDGCVAASRDDTTLNALNTLH
                     ESGYDAGKALQRLVKKPVPKLIEKSWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKET
                     GELITFYYYWKKTPEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLS
                     SASEDDFDSEDSEQELKGYACRHCFSTTSKDWHHGGRENILLCTDCRIHFKKYGELPP
                     IEKPVDPPPFMFKPVKEEDDGPSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGRASPI
                     NEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSPLKSTKRQREKVASDTDE
                     ADRTSSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSP
                     QDNESDSDSSAQQQMLQAQPPALQAPSGAAPAPSSAAPGTAQPPTPGPTPATTAPSQG
                     SPSTSQPPTQPQAPSAPAPHAHVQQAPALHPQRLPSPHPPLQPLTGPAGATPGPPHPQ
                     TPLHGQGPPGPHGLQAGPLLQHPGPPQPFGLPPQASQAAAHPHASLQPPASQSALQPP
                     QPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA
                     LKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPVLTQSQSLAPASHPPTGLHQV
                     PPQTPFAQHPFAAAAPPPITPPSCPSTSTPPAGPGPSAQPPCSAPVAAGGSVAGGAAC
                     PLPTVQVKEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSC
                     ARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREAERAA
                     QKASSSAHEGRLGDPQLGGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPH
                     VMSPTNRNHPFYVPLNPTDPLLAYHMPGLYNVDPTIRERELREREIREREIRERELRE
                     RMKPGFEVKPPELDPLHPAANPMEHFARHGALTIPPAAGPHPFASFHPGLNPLERERL
                     ALAGPQLRPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLH
                     LHQQDPLHQGSAGPVHPLVDPLTAGPHLARFPYPPGTLPSPLLGQPPHEHEMLRHPVF
                     GTPYPRDLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQED
                     YYSRLKKEGDKQL"
     misc_feature    <479..571
                     /gene="RERE"
                     /note="or Bromo Adjacent Homology domain (also called ELM1
                     and BAM for Bromo Adjacent Motif). BAH domains have first
                     been described as domains found in the polybromo protein
                     and Yeast Rsc1/Rsc2 (Remodeling of the Structure of
                     Chromatin). They also occur in...; Region: BAH; cl02608"
                     /db_xref="CDD:470629"
     misc_feature    506..658
                     /gene="RERE"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    833..970
                     /gene="RERE"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(836..838,926..931,935..940,944..952,956..964)
                     /gene="RERE"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1166..1330
                     /gene="RERE"
                     /note="Zinc finger DNA binding domain; binds specifically
                     to DNA consensus sequence [AT]GATA[AG] promoter elements;
                     a subset of family members may also bind protein;
                     zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C;
                     Region: ZnF_GATA; cd00202"
                     /db_xref="CDD:238123"
     misc_feature    order(1169..1171,1178..1180,1235..1237,1244..1246)
                     /gene="RERE"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:238123"
     misc_feature    order(1196..1201,1205..1207,1235..1267,1319..1321,
                     1325..1330)
                     /gene="RERE"
                     /note="DNA-binding region [nucleotide binding]; DNA
                     binding site"
                     /db_xref="CDD:238123"
     misc_feature    1352..4276
                     /gene="RERE"
                     /note="Atrophin-1 family; Region: Atrophin-1; pfam03154"
                     /db_xref="CDD:460830"
ORIGIN      
        1 aaagacaaaa cagaacttgc tgttgtcttg acagagcagg gcatctgtct gcagcctctc
       61 agtggctcgg cctgcgagtt ccctgatgtt ggccgtctgg gatccccttt ctgcagcccc
      121 acttccctgc acactagctt ggtatgcggg gagaagctgc ctcgtctgtt ggctgggctt
      181 tatttacgga aacagcaggg ttgagattga ttgcgttgag agacagtgta tggatgaggg
      241 agggtcacag cacatgctca gtcctgtcag tgtgaggggg agtttctgcg tcctgcgtga
      301 aggcttaggt cacagcacaa gctcagtgcg agctctgcga ggtctctcag acggcatgtg
      361 cctccatttt gagttgctag agtagaaagg gcagagtttg cacagtaagc ggaggcgcag
      421 ggcgcagcta cactcaccag ggcctctgtt aggcatggac catgcattca gcccctgcag
      481 gaggctgaac agtacccagg gagaaattcg tgttggtcct agccatcagg ccaaacttcc
      541 cgatttgcaa ccattccctt ctcccgatgg tgacactgtg acccaacatg aggaactggt
      601 ctggatgcct ggagttaatg actgtgacct ccttatgtac ttgagggcag caaggagcat
      661 ggcggccttt gcagggatgt gtgacggagg ctccacggaa gatggctgcg ttgcagcctc
      721 gcgggatgac accaccctca acgcactgaa cacactccat gaaagcggtt atgatgctgg
      781 caaagccctg cagcgcctgg tgaagaagcc tgtgcccaag ctgattgaga agagctggac
      841 cgaggacgaa gtgaaacgct tcgttaaggg gcttaggcag tacggcaaga acttcttccg
      901 aattcgaaag gagctgcttc ccaataagga aacaggagaa ctgatcacct tctattacta
      961 ctggaagaaa accccagaag cagccagctc ccgggctcac cgcaggcacc gcaggcaggc
     1021 cgtcttcagg aggattaaga cccgcactgc atccacgccc gtcaacacac cctccagacc
     1081 cccgtccagt gaattcttgg acctgagttc agccagtgag gatgacttcg acagtgagga
     1141 cagcgagcag gagctgaagg gctacgcctg ccgccactgc ttcagcacca cttccaaaga
     1201 ctggcaccac gggggccggg agaacatcct gctctgtaca gactgccgca ttcacttcaa
     1261 gaaatacggc gagctccccc ccatagagaa gcccgtggac cccccaccat ttatgttcaa
     1321 acctgtgaaa gaggaagacg atgggcccag tgggaaacat agcatgagga cacggcggag
     1381 tcgtggctcg atgtctacac tgcgcagtgg tcggaagaag cagccagcca gccctgatgg
     1441 tcgcgcctcg cccatcaatg aagacatccg ctccagcggc cggaactccc ccagcgctgc
     1501 cagcacctcc agcaacgaca gtaaagcaga gacggtgaag aagtcggcca agaaggtgaa
     1561 ggaggaagcc tcgtcccctc tcaagagcac caagcgtcag cgggagaagg tggcctctga
     1621 tacggatgag gccgatagga ccagctccaa gaagacaaag acccaggaga tcagccggcc
     1681 caactcgccg tccgaaggcg agggagagag ctcagacagc cgcagcgtca acgatgaggg
     1741 cagcagtgac cccaaagaca tcgaccagga caatcgtagc acgtccccca gcatccccag
     1801 cccccaggac aacgaaagcg actccgactc ctcggcccag cagcagatgc tgcaggccca
     1861 gcccccggcc ttgcaggctc ccagtggggc cgctccagct ccctcgtcgg ccgcgccggg
     1921 gaccgcccag ccgcccacgc cagggcccac gcccgccacc accgccccgt cacagggctc
     1981 cccgtcgacc tcccagcccc ccacccagcc gcaggcgccc tcagctcctg ctccccacgc
     2041 ccacgtccag caggcacctg ccctacaccc acaacggctg ccctcaccgc accccccgct
     2101 gcagccgctg accgggccgg ccggcgccac cccgggcccg ccccaccccc agacccccct
     2161 gcatggtcag ggcccgcccg gccctcacgg cctccaggcc gggccgctgc tgcagcaccc
     2221 aggccccccg cagcccttcg gcctccctcc gcaggcctcc caggcggcgg cccaccctca
     2281 cgcctccctg cagccgcccg cctctcagtc ggcgttgcag cccccgcagc cccctcggga
     2341 gcagcccctg ccacctgcgc ccttggccat gccccacatc aagcccccgc ccaccacacc
     2401 catcccccag ctgccggcgc cccaggccca caagcacccg cctcacctct cggggccctc
     2461 gcccttctcc atgaacgcca acctcccgcc ccctccggcc ctgaagcccc tgagctccct
     2521 gtccacgcac cacccgccct cggcccaccc gcctcccctg cagctcatgc cccagagcca
     2581 gcctctgccc tcctcccccg cccagccccc tgtgctgacc cagagccaga gcctggcccc
     2641 tgcctcccac ccccccacgg gcctccacca ggtgcccccc cagaccccgt tcgcccagca
     2701 cccctttgcc gccgcggccc ctcctcccat cacccctccg agttgcccct ccacctccac
     2761 ccccccggcg ggtcctggcc cctcggccca gccgccctgc tctgcccccg tcgctgcggg
     2821 aggcagcgta gctggggggg cagcctgccc gctccccacc gtccaggtca aggaagaggc
     2881 cctggacgaa gctgaggagc ccgagagccc ccctccgccg cctcggagcc cgtcccctga
     2941 gcccactgtg gtggacaccc ccagccacgc cagccagtct gccaggttct acaaacacct
     3001 ggaccggggt tacaactcat gtgcgcggac agacttgtat ttcatgcctc tggcggggtc
     3061 caagctggcc aagaagaggg aggaggccat cgagaaggcc aaacgggagg ccgagcagaa
     3121 ggcgcgagag gagcgggagc gggagaagga gaaagagaag gagcgcgagc gggagcgcga
     3181 ggcggagcgg gcggctcaga aggcgtccag ctctgcgcac gaaggccgcc tcggcgaccc
     3241 ccagctcggt ggtcccggcc acatgcggcc ctccttcgag cccccgccca ccaccatcgc
     3301 ggccgttcct ccgtatatcg ggcccgacac accggccctc cggactctga gcgagtacgc
     3361 ccggccccac gtcatgtcgc ccaccaaccg taaccacccc ttctacgtgc ccctcaaccc
     3421 caccgacccg ctgctggcct accacatgcc cggcctctac aacgtcgacc ccaccatccg
     3481 cgagcgggag ctccgggagc gcgagatccg ggagcgtgag atccgggagc gcgagctgcg
     3541 ggagcggatg aagccgggct tcgaggtgaa gcccccggag ctggaccccc tgcacccggc
     3601 cgccaacccc atggagcact tcgcccggca cggcgccctc accatccccc ccgccgccgg
     3661 cccccaccct ttcgcgtctt tccaccctgg cctgaacccc ttggagagag agagactggc
     3721 cctggcgggc ccccagctgc ggcccgaaat gagctacccg gacagactgg cggccgagcg
     3781 cattcacgcc gagcgcatgg cctcactgac cagcgacccc ctggcgcggc tgcagatgtt
     3841 caacgtgacc ccgcaccacc accagcactc ccacatccac tcgcacctcc acctccacca
     3901 gcaggaccct ctccaccaag gttcagcagg cccagttcac ccgctggttg accccctgac
     3961 tgctggcccg cacctggctc gcttccccta tccccctggc accctcccca gccctctgct
     4021 tggacagccc ccccatgagc acgagatgct tcgccatcca gtttttggca ccccctaccc
     4081 ccgagacctg cctggggcca tcccaccccc catgtcggcg gcccaccagc tgcaggccat
     4141 gcacgcccag tcggcggagc tgcagagact ggccatggag cagcagtggc tgcacggaca
     4201 cccgcacatg catggtggtc accttccgag tcaggaagat tattacagtc gactgaagaa
     4261 ggaaggtgac aagcagttat aagttattta tttgttaacg ctggctgtgg aaaccccagt
     4321 tcttggggga gaaacaggac tttttacata caataggagc tgcaaaagca aaaagaatat
     4381 cttctaaaga tttctttata tatttaaaaa ccccacaact aaaaacgtat cagcatacta
     4441 gtgttcgttt gtagagagga ttccttgaga ctggtttggg tctccctgca tgacagtccc
     4501 ccagaaactt agtgaggcct ggactggact gaacattcag aaaactcccc tgcaatcttg
     4561 gggtttggct ttagttttct tttccttcct tgatttcttc agtaggtgct agaatccagt
     4621 tcacaccctt cactgtgcgt gcagacacac tcagttgcgt gtgttccaaa acccacaagg
     4681 ttgccagata ggcagcgtat gagtttggaa tccaagagct gtaattttta aaaaatcttt
     4741 tattttaata cattgtagga aatcttcata atttgaggaa gttctgcgca tggcttttta
     4801 cgtctgtaaa taaataattt tagaacagcc ttttttttct tccataaact actattctga
     4861 tctatttttt ccagccatgt cactaattgt gaattcctac cagctgttga cagaatacag
     4921 agttgatttt ttaataaaaa gttatatata attatccctt taattaaagg gaacggatgg
     4981 gcgttactag ttacaaacgg gcaaacgctt gggactaggt ttgggcgcag cagggagcag
     5041 ccaggggttt gcagggacag tgttacaaac cgtttctttg ttgtgctgct ttggttttca
     5101 cttctgtctg ttcccagcct gtgctttgcc agcggtgcag acatctgtta gcttgcacca
     5161 ggagcgcagg agttaaatgt cccccattct gtctctgagg gatcgaaagc acatgtttct
     5221 gtgtgtcaga ttgtagattt ccttatagat ttctctgcac acgcatttga ttgtcctgaa
     5281 tgaactgcct tttttaacat taacttggac aatttcataa acaaacattc tagaaaatcc
     5341 aagaaaacga ttccctgcga gccactcagc acatatgctt gccaaaggga tctgttagaa
     5401 atctgctttg tcgtgcgtgt cgtcgtttgg atcttcttgt ggtgaggcca ggccatcctt
     5461 gtcacggccc gaggctgctt tggagtgagg gagatcccgg agttggtccg gctgcgggtg
     5521 gcggcctgtg tgttacccca ggaacaggga ctcacgtcgg acagggagac acttggcgtc
     5581 ccgctctcct cccggaagca ggacgggggt cacagccgtg gacgtggagt gagaggcagc
     5641 tccacctggg ggcaggtggc ccagagagcc cgcctcggct ttctgagttg cccgcgagct
     5701 gcattttctc cagagcagag ggtggggaag ttggaaggac attctgcacc tgttgatcac
     5761 gctttctgcc aggacgtgac cttttctgtt cctcttctct cagcccttcg ggggctcttt
     5821 ctgccgtggt gcgcggagtt cccgcctggg ggtcagtgga cgtggagcgc gtctaggacc
     5881 ggagccacag agggggcggg acgagaggct ggcgctttga cccagaaacc agcaggcaat
     5941 agctcagatt caggttccag attcacactt gcctcaaggg catttccagt gtccactaaa
     6001 gccacgttcg gtttccgttg ggacagatag aggatggttt tgtctgttga aaatgttcgt
     6061 aggttttttc tttcgttttc tctcattcca tttctgcctt aactttagct ccttgggggg
     6121 aggcaagctc agatgaacac tttgtcatcg cttgagtggc cgcgttggcc aggggcgttt
     6181 gtgtccccgg ggctagtgac gtgccatcag ggcgggctcc gctctgcggc ctccacgcct
     6241 ctgagccggg ccccttcctg ctggactcgg gcgctcctgc tgccccggct cctgcacgga
     6301 agcccccgcc tgctttgctc cctttgggtg gaacgcgacg cctcctgccc agttatcctc
     6361 ctttctctcc tctctcgtcc atttccaaag aagagagaga gttgaagtac ttggaagtct
     6421 gtacttgaaa actgtctgaa ggcgttttct ccttaggttt tggttttctc cccacgtccc
     6481 caggtgaagc actgagattc ttccatttaa aaacccacaa cccgaaatcc tcacctggtc
     6541 aactgcagcg tgtgtcggag gccccagacc ttcacggtgt ctttgaagcc cgaccccttg
     6601 gtctcctttt gggtttcctc cctttgtttg gagttgtttt gcttttccgt gttttatgtg
     6661 tatcttgttc actgtcgtcg ggttgagctt cacttcgctg tggcagcagc agagcggagt
     6721 gtgcattctg atttgctacg tttatatata tcttgaagct aaatgtatat atgagtagtt
     6781 tgccatgaga taacacggtg taaacagagt agacacccag aaattgtgac ttctgtgttc
     6841 tctccatctg agtattttgt aatttttttg aaatattcgt ggacataaat aaaaacaagc
     6901 tacactaca
//
LOCUS       XM_032610683            4706 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FLVCR heme transporter 1 (FLVCR1),
            transcript variant X1, mRNA.
ACCESSION   XM_032610683
VERSION     XM_032610683.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4706
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4706
                     /gene="FLVCR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742832"
     CDS             178..1869
                     /gene="FLVCR1"
                     /codon_start=1
                     /product="feline leukemia virus subgroup C
                     receptor-related protein 1 isoform X1"
                     /protein_id="XP_032466574.1"
                     /db_xref="GeneID:116742832"
                     /translation="MALPDDEEGTTVANGHPPANGYLPVPGDAPAGKVSAETQNGPKA
                     GCLALNGVSRDSPKAASGALDRPKTPLAPEEETQAQLLPKDSGEQTPAVEGTLVPRTA
                     LSARRFLVLLIFSLYSMVNAFQWIQYSIISNVFEGFYNVSSLHIDWLSMVYMLAYVPL
                     IFPATWLLDTRGLRLTALLGSGLNCLGAWIKCGSVQQHLFWVTMLGQCLCSVAQVFIL
                     GLPSHIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPNTQNNTQLLACNIST
                     MFYGTSAVATLLFILTVIAFKEKPQYPPSQAQAVLQDSPPGEYSYGKSIRNLFKNIPF
                     VLLLITYGIMTGAFYSVSTLLNQIILTYYKGEEVNAGRIGLTLVLAGMVGSILCGLWL
                     DYTKTYKHTTLTVYILSFVGMVIFTFTLNLGHIIIVFVTGGLLGFFMTGYLPLGFEFA
                     VEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLTSDYSPKGGNIFLCVWMFVGIILT
                     ALIKSDLKRHNINKGVTNGDIKAVSSEYFYDYTIEKCVPRVSINPSTPSAFFLFL"
     misc_feature    493..1713
                     /gene="FLVCR1"
                     /note="Feline leukemia virus subgroup C receptor-related
                     protein 1 of the Major Facilitator Superfamily of
                     transporters; Region: MFS_FLVCR1; cd17455"
                     /db_xref="CDD:341013"
     misc_feature    order(538..543,550..555,562..564,658..660,817..822,
                     826..834,841..843,901..903,910..915,922..924,1198..1200,
                     1207..1212,1219..1227,1234..1236,1318..1320,1330..1332,
                     1489..1494,1504..1506,1516..1518,1564..1566,1573..1578,
                     1585..1590,1597..1599)
                     /gene="FLVCR1"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341013"
ORIGIN      
        1 cagcgcgggt tgcagctccc ggttcagacc gaggctcact cggccgggga gagggtcgca
       61 ggagcagtgg gccgaggggt agggcttggg gtgcagggag ggcctcgggt cttgggctgc
      121 gggtgcaggg ctgggaggag ggcgggggcg ccaggcggcc ccagggagcc cagggacatg
      181 gcactgcccg acgatgagga ggggacaacg gtggcgaacg ggcacccgcc cgcgaacgga
      241 tacctcccgg tcccggggga cgcgcccgct ggaaaggtga gtgcggagac gcagaacggg
      301 cccaaagccg gctgcttggc cctgaatggg gtctctcggg acagccccaa ggccgcctcg
      361 ggagctctgg accggccgaa gactccgctg gccccggagg aggagaccca ggcccagttg
      421 ctgcccaagg actccggcga gcagacgccg gcggtcgagg gcaccctggt gccccggact
      481 gcgctctccg cgcggcgctt tttggtgcta ctgatcttca gcctgtactc gatggtgaac
      541 gcgtttcagt ggatccaata cagcatcatc agcaacgttt tcgagggctt ctacaacgtc
      601 tcctcgctgc acattgactg gctgtccatg gtatacatgc tggcctacgt gcccctcatc
      661 ttcccggcca cctggctgct ggataccaga ggcctgcggc tcaccgccct gctgggttcc
      721 ggcctcaact gcctgggagc ctggatcaag tgcggcagcg tgcagcagca tctcttctgg
      781 gtcaccatgt taggccagtg cctgtgctct gtggcccagg tgttcatcct cggcttgccc
      841 tcccacatcg cttcagtgtg gtttgggccc aaggaggtgt ccacagcttg cgccaccgcc
      901 gtgctaggta atcagcttgg aactgcagtt ggctttttgc tgccaccagt tttggtgccg
      961 aacacacaga ataacacaca actgctggct tgtaatatca gtaccatgtt ttatggaact
     1021 tcagctgtcg ccacactttt atttatttta acggtaattg cattcaaaga aaaacctcag
     1081 tatccaccaa gccaggctca agcagttctc caagacagtc cccctggaga gtattcctat
     1141 gggaaatcaa taaggaacct atttaaaaat attccttttg tccttctatt gatcacttat
     1201 ggtatcatga ctggagcatt ttattcagtc tcaacattat taaatcaaat tatactgaca
     1261 tactataagg gagaagaagt gaatgctgga aggattgggc taacgctagt gttagctgga
     1321 atggtgggct ctattctttg tggtttatgg ctggattata ccaaaacata caaacatact
     1381 actttgacag tttacatttt gtcttttgtt ggaatggtta tatttacttt cacactaaac
     1441 cttgggcaca ttatcatcgt gtttgtcact ggagggttgc ttggtttctt catgactggt
     1501 tacctcccct tgggttttga atttgctgtt gaaatcactt accctgagtc tgaaggtact
     1561 tcatctggtc ttcttaatgc tgctgcacag atatttggaa ttttattcac attggcgcaa
     1621 ggaaagctca catcagacta tagtcctaag ggagggaaca ttttcctctg tgtttggatg
     1681 tttgtaggca tcattttaac agcattaatc aagtccgatc tgaaaagaca caatataaat
     1741 aaaggagtta caaatggcga tattaaagct gtaagtagtg aatactttta tgattatact
     1801 attgagaaat gtgtgcctag agtgagtata aacccgtcta ccccatcagc ttttttttta
     1861 ttcctgtgaa tctgtcataa tggcatatgc cagatacgta ctataaattt tttatcctct
     1921 tattctttct acaggtacca gttgatagcc ccacagatga agaatcaaaa actattctga
     1981 tgtccaagca atcagaatca gcaatttgag gtgaaaggaa aagttaatat catgtgataa
     2041 ttgagtaata aagcttagtt tataggttgt gggaatggac acttacttga aaattattgt
     2101 atgactcctg tatgcagtta ctgttcttat ttgttaattt aagcaatatt ttgcttaaaa
     2161 tacttttgtt tacatcattt taacactacc atttatctaa tgagtgtccc atcttatatt
     2221 attgacctaa aagtaagctt cttgacattt ggtttttaaa agtaaatgtt attttcctag
     2281 aaaatggaag cttagaaggc tttctaaagt gataatatgg aggtccaatc ccttcaagtc
     2341 acataggagt acatgcaatt tgtttatata aaactatcca gtggaaccaa gtgtataatg
     2401 tattcctaat tatctccctt tccattgttc agaccagctg tccaagcccc ctcagtgtga
     2461 atacagtcta cgaatatgac acttctaacc caccaaatga cactattggg atgagacttc
     2521 cagatgacct cttaagattt ttcccatttc ttacattctt gttagaaaat actttgtaac
     2581 aggtactgtc agcgaccata aaaacttttc tgtgtgcaga cggaacccat aactttggtc
     2641 ttaggcatat gttctcatta agcgaagtag ctcagacaca gactcattac cttgagttct
     2701 tctttgtgct gtcttcccat tcatcgcaag aatgctaacg ctatattttt tcactccaac
     2761 ttgatataga gtagttttgt atccactacc tttttttact ctttttttct tcaatatata
     2821 actttctagt aagaaaattt catcctatgt gttactggct ttttcatgat tttttgtatc
     2881 acaccttata cttttgcctt gaagattcct gagataagga aatctgtaat aacttcaggt
     2941 agcctaggta ttcccattta gtggagacct cttgaaatgc tgtctgttct aattcagcaa
     3001 atcattcttt atggaatctt tatcattctt tgaggaatcc tttgcccagg tctgtgctcc
     3061 ctcagtgtgt tgggggagtg gattcttttc ttcaccacag aatgtgcata ggctccaaac
     3121 tgttggaaca tctgctcttt tacatgctca gggtaaggag aataggacca aatgcatttc
     3181 cacagtgcct actactgcat tttgtttaca gtgagaatct caatgttgta catgtcctgg
     3241 ctctctaagc tgatagggaa tatctttaga gtaatggcat ttaaacagcc ataatattta
     3301 tattatgtcc acagaaacac aaaaagccaa tcaggtattc ccttgaatat ccttgaagtg
     3361 aattagcaat tctgatttgg gtgtactata tgcatcgctt tatactgaaa ttataacatt
     3421 ctctgtaacc aaacgacagt aaattatgtg gaatcttacc ctggagaacg tgttaccgga
     3481 agaacttagc tgggaatcag gaacttcagg tctatgtcct ggatctgttt ctagtttccc
     3541 tgtaaatcag ccagcacttt cctcatctgt ataatgaatg tgtaaaattt gatctcagag
     3601 atcttttttg aattttaaat gcactcatcg ggggatagac caaatcattg taccacagga
     3661 acttaaatct agctgtagaa aaattccctg gacagttgaa tgaacaactg tggttgttac
     3721 cttgtagata cagggaactt aaaatctgtt tttagaactc ccctggtggc acagtgttta
     3781 agaatccgcc tgccaaggca ggggacacgg gttcaagccc tggtccggga agatcccaca
     3841 tcctgcggag catctaagcc cacgcgccac aaatactgag cctgtgctct agagcccgcg
     3901 agctgcaact actgagcctg cgagccacaa ctactgaaac ccatgcacct agagcctgtg
     3961 tctgcaacaa gagaagccac cacaatgaaa agcctgtgca ccacaacgaa gagtagcccc
     4021 tgctcaccac aactagagaa agccctcacg cagcaacgaa gacctaacac agccaaaaat
     4081 aaattaattt taaaaatatg catgacaaaa tttttaaaaa ataaaatcaa atctgttttt
     4141 agcctttttg ttcagttggt gatagctcag gcagaatagg ctgaatcatt aacttcctta
     4201 gatatttacg tcacagattt tatggccaaa aatatatttt aaggtacctc ctctaaataa
     4261 ttgtttttac ttttaaacag tcaatgttat ttcaaataat catatacttg tcaagttcct
     4321 gaggtttgaa caaattacag ataaaagttg gaatatttta tttctaaaaa gcgtatatac
     4381 atatatgtca tatgtatttt tccttgttga ttagaaaaag aatgaaatat gttgtgacaa
     4441 aacacaaaat gaattgataa tttttctgta ttttgaatta aatttgtctg taatacatca
     4501 aacaagaatg tcatgtaatt ctatgtcgta tctttggaat atggagttgg taactatcac
     4561 ttgtgtaaat tttaatcaag tgattttaga aagaaactgg atgctttcaa aagctcttgt
     4621 atttataaat gttgcaaata tagcttttac cttttgtgaa tgttggagaa atgtctttaa
     4681 aaatgtgttt taaaaatatg tgtaaa
//
LOCUS       XR_004346608            4284 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FLVCR heme transporter 1 (FLVCR1),
            transcript variant X2, misc_RNA.
ACCESSION   XR_004346608
VERSION     XR_004346608.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4284
                     /gene="FLVCR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742832"
     misc_RNA        1..4284
                     /gene="FLVCR1"
                     /product="FLVCR heme transporter 1, transcript variant X2"
                     /db_xref="GeneID:116742832"
ORIGIN      
        1 cagcgcgggt tgcagctccc ggttcagacc gaggctcact cggccgggga gagggtcgca
       61 ggagcagtgg gccgaggggt agggcttggg gtgcagggag ggcctcgggt cttgggctgc
      121 gggtgcaggg ctgggaggag ggcgggggcg ccaggcggcc ccagggagcc cagggacatg
      181 gcactgcccg acgatgagga ggggacaacg gtggcgaacg ggcacccgcc cgcgaacgga
      241 tacctcccgg tcccggggga cgcgcccgct ggaaaggtga gtgcggagac gcagaacggg
      301 cccaaagccg gctgcttggc cctgaatggg gtctctcggg acagccccaa ggccgcctcg
      361 ggagctctgg accggccgaa gactccgctg gccccggagg aggagaccca ggcccagttg
      421 ctgcccaagg actccggcga gcagacgccg gcggtcgagg gcaccctggt gccccggact
      481 gcgctctccg cgcggcgctt tttggtgcta ctgatcttca gcctgtactc gatggtgaac
      541 gcgtttcagt ggatccaata cagcatcatc agcaacgttt tcgagggctt ctacaacgtc
      601 tcctcgctgc acattgactg gctgtccatg gtatacatgc tggcctacgt gcccctcatc
      661 ttcccggcca cctggctgct ggataccaga ggcctgcggc tcaccgccct gctgggttcc
      721 ggcctcaact gcctgggagc ctggatcaag tgcggcagcg tgcagcagca tctcttctgg
      781 gtcaccatgt taggccagtg cctgtgctct gtggcccagg tgttcatcct cggcttgccc
      841 tcccacatcg cttcagtgtg gtttgggccc aaggaggtgt ccacagcttg cgccaccgcc
      901 gtgctaggta atcagcttgg aactgcagtt ggctttttgc tgccaccagt tttggtgccg
      961 aacacacaga ataacacaca actgctggct tgtaatatca gtaccatgtt ttatggaact
     1021 tcagctgtcg ccacactttt atttatttta acggtaattg cattcaaaga aaaacctcag
     1081 tatccaccaa gccaggctca agcagttctc caagacagtc cccctggaga gtattcctat
     1141 gggaaatcaa taaggaacct atttaaaaat attccttttg tccttctatt gatcacttat
     1201 ggtatcatga ctggagcatt ttattcagtc tcaacattat taaatcaaat tatactgaca
     1261 tactataagg gagaagaagt gaatgctgga aggattgggc taacgctagt gttagctgga
     1321 atggtgggct ctattctttg tggtttatgg ctggattata ccaaaacata caaacatact
     1381 actttgacag tttacatttt gtcttttgtt ggaatggtta tatttacttt cacactaaac
     1441 cttgggcaca ttatcatcgt gtttgtcact ggagggttgc ttggtttctt catgactggt
     1501 tacctcccct tgggttttga atttgctgtt gaaatcactt accctgagtc tgaaggtact
     1561 tcatctggtc ttcttaatgc tgctgcacag atatttggaa ttttattcac attggcgcaa
     1621 ggaaagctca catcagacta tagtcctaag ggagggaaca ttttcctctg tgtttggatg
     1681 tttgtaggca tcattttaac agcattaatc aagtccgatc tgaaaagaca caatataaat
     1741 aaaggagtta caaatggcga tattaaagct gtaagtagtg aatactttta tgattatact
     1801 attgagaaat gtgtgcctag agtgagtata aacccgtcta ccccatcagc ttttttttta
     1861 ttcctgtgaa tctgtcataa tggcatatgc cagatacgta ctataaattt tttatcctct
     1921 tattctttct acaggtacca gttgatagcc ccacagatga agaatcaaaa actattctga
     1981 tgtccaagca atcagaatca gcaatttgag accagctgtc caagccccct cagtgtgaat
     2041 acagtctacg aatatgacac ttctaaccca ccaaatgaca ctattgggat gagacttcca
     2101 gatgacctct taagattttt cccatttctt acattcttgt tagaaaatac tttgtaacag
     2161 gtactgtcag cgaccataaa aacttttctg tgtgcagacg gaacccataa ctttggtctt
     2221 aggcatatgt tctcattaag cgaagtagct cagacacaga ctcattacct tgagttcttc
     2281 tttgtgctgt cttcccattc atcgcaagaa tgctaacgct atattttttc actccaactt
     2341 gatatagagt agttttgtat ccactacctt tttttactct ttttttcttc aatatataac
     2401 tttctagtaa gaaaatttca tcctatgtgt tactggcttt ttcatgattt tttgtatcac
     2461 accttatact tttgccttga agattcctga gataaggaaa tctgtaataa cttcaggtag
     2521 cctaggtatt cccatttagt ggagacctct tgaaatgctg tctgttctaa ttcagcaaat
     2581 cattctttat ggaatcttta tcattctttg aggaatcctt tgcccaggtc tgtgctccct
     2641 cagtgtgttg ggggagtgga ttcttttctt caccacagaa tgtgcatagg ctccaaactg
     2701 ttggaacatc tgctctttta catgctcagg gtaaggagaa taggaccaaa tgcatttcca
     2761 cagtgcctac tactgcattt tgtttacagt gagaatctca atgttgtaca tgtcctggct
     2821 ctctaagctg atagggaata tctttagagt aatggcattt aaacagccat aatatttata
     2881 ttatgtccac agaaacacaa aaagccaatc aggtattccc ttgaatatcc ttgaagtgaa
     2941 ttagcaattc tgatttgggt gtactatatg catcgcttta tactgaaatt ataacattct
     3001 ctgtaaccaa acgacagtaa attatgtgga atcttaccct ggagaacgtg ttaccggaag
     3061 aacttagctg ggaatcagga acttcaggtc tatgtcctgg atctgtttct agtttccctg
     3121 taaatcagcc agcactttcc tcatctgtat aatgaatgtg taaaatttga tctcagagat
     3181 cttttttgaa ttttaaatgc actcatcggg ggatagacca aatcattgta ccacaggaac
     3241 ttaaatctag ctgtagaaaa attccctgga cagttgaatg aacaactgtg gttgttacct
     3301 tgtagataca gggaacttaa aatctgtttt tagaactccc ctggtggcac agtgtttaag
     3361 aatccgcctg ccaaggcagg ggacacgggt tcaagccctg gtccgggaag atcccacatc
     3421 ctgcggagca tctaagccca cgcgccacaa atactgagcc tgtgctctag agcccgcgag
     3481 ctgcaactac tgagcctgcg agccacaact actgaaaccc atgcacctag agcctgtgtc
     3541 tgcaacaaga gaagccacca caatgaaaag cctgtgcacc acaacgaaga gtagcccctg
     3601 ctcaccacaa ctagagaaag ccctcacgca gcaacgaaga cctaacacag ccaaaaataa
     3661 attaatttta aaaatatgca tgacaaaatt tttaaaaaat aaaatcaaat ctgtttttag
     3721 cctttttgtt cagttggtga tagctcaggc agaataggct gaatcattaa cttccttaga
     3781 tatttacgtc acagatttta tggccaaaaa tatattttaa ggtacctcct ctaaataatt
     3841 gtttttactt ttaaacagtc aatgttattt caaataatca tatacttgtc aagttcctga
     3901 ggtttgaaca aattacagat aaaagttgga atattttatt tctaaaaagc gtatatacat
     3961 atatgtcata tgtatttttc cttgttgatt agaaaaagaa tgaaatatgt tgtgacaaaa
     4021 cacaaaatga attgataatt tttctgtatt ttgaattaaa tttgtctgta atacatcaaa
     4081 caagaatgtc atgtaattct atgtcgtatc tttggaatat ggagttggta actatcactt
     4141 gtgtaaattt taatcaagtg attttagaaa gaaactggat gctttcaaaa gctcttgtat
     4201 ttataaatgt tgcaaatata gcttttacct tttgtgaatg ttggagaaat gtctttaaaa
     4261 atgtgtttta aaaatatgtg taaa
//
LOCUS       XM_032610684            4117 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FLVCR heme transporter 1 (FLVCR1),
            transcript variant X3, mRNA.
ACCESSION   XM_032610684
VERSION     XM_032610684.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4117
                     /gene="FLVCR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 14
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742832"
     CDS             175..1842
                     /gene="FLVCR1"
                     /codon_start=1
                     /product="feline leukemia virus subgroup C
                     receptor-related protein 1 isoform X2"
                     /protein_id="XP_032466575.1"
                     /db_xref="GeneID:116742832"
                     /translation="MALPDDEEGTTVANGHPPANGYLPVPGDAPAGKVSAETQNGPKA
                     GCLALNGVSRDSPKAASGALDRPKTPLAPEEETQAQLLPKDSGEQTPAVEGTLVPRTA
                     LSARRFLVLLIFSLYSMVNAFQWIQYSIISNVFEGFYNVSSLHIDWLSMVYMLAYVPL
                     IFPATWLLDTRGLRLTALLGSGLNCLGAWIKCGSVQQHLFWVTMLGQCLCSVAQVFIL
                     GLPSHIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPNTQNNTQLLACNIST
                     MFYGTSAVATLLFILTVIAFKEKPQYPPSQAQAVLQDSPPGEYSYGKSIRNLFKNIPF
                     VLLLITYGIMTGAFYSVSTLLNQIILTYYKGEEVNAGRIGLTLVLAGMVGSILCGLWL
                     DYTKTYKHTTLTVYILSFVGMVIFTFTLNLGHIIIVFVTGGLLGFFMTGYLPLGFEFA
                     VEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLTSDYSPKGGNIFLCVWMFVGIILT
                     ALIKSDLKRHNINKGVTNGDIKAVPVDSPTDEESKTILMSKQSESAI"
     misc_feature    490..1710
                     /gene="FLVCR1"
                     /note="Feline leukemia virus subgroup C receptor-related
                     protein 1 of the Major Facilitator Superfamily of
                     transporters; Region: MFS_FLVCR1; cd17455"
                     /db_xref="CDD:341013"
     misc_feature    order(535..540,547..552,559..561,655..657,814..819,
                     823..831,838..840,898..900,907..912,919..921,1195..1197,
                     1204..1209,1216..1224,1231..1233,1315..1317,1327..1329,
                     1486..1491,1501..1503,1513..1515,1561..1563,1570..1575,
                     1582..1587,1594..1596)
                     /gene="FLVCR1"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341013"
ORIGIN      
        1 cgcgggttgc agctcccggt tcagaccgag gctcactcgg ccggggagag ggtcgcagga
       61 gcagtgggcc gaggggtagg gcttggggtg cagggagggc ctcgggtctt gggctgcggg
      121 tgcagggctg ggaggagggc gggggcgcca ggcggcccca gggagcccag ggacatggca
      181 ctgcccgacg atgaggaggg gacaacggtg gcgaacgggc acccgcccgc gaacggatac
      241 ctcccggtcc cgggggacgc gcccgctgga aaggtgagtg cggagacgca gaacgggccc
      301 aaagccggct gcttggccct gaatggggtc tctcgggaca gccccaaggc cgcctcggga
      361 gctctggacc ggccgaagac tccgctggcc ccggaggagg agacccaggc ccagttgctg
      421 cccaaggact ccggcgagca gacgccggcg gtcgagggca ccctggtgcc ccggactgcg
      481 ctctccgcgc ggcgcttttt ggtgctactg atcttcagcc tgtactcgat ggtgaacgcg
      541 tttcagtgga tccaatacag catcatcagc aacgttttcg agggcttcta caacgtctcc
      601 tcgctgcaca ttgactggct gtccatggta tacatgctgg cctacgtgcc cctcatcttc
      661 ccggccacct ggctgctgga taccagaggc ctgcggctca ccgccctgct gggttccggc
      721 ctcaactgcc tgggagcctg gatcaagtgc ggcagcgtgc agcagcatct cttctgggtc
      781 accatgttag gccagtgcct gtgctctgtg gcccaggtgt tcatcctcgg cttgccctcc
      841 cacatcgctt cagtgtggtt tgggcccaag gaggtgtcca cagcttgcgc caccgccgtg
      901 ctaggtaatc agcttggaac tgcagttggc tttttgctgc caccagtttt ggtgccgaac
      961 acacagaata acacacaact gctggcttgt aatatcagta ccatgtttta tggaacttca
     1021 gctgtcgcca cacttttatt tattttaacg gtaattgcat tcaaagaaaa acctcagtat
     1081 ccaccaagcc aggctcaagc agttctccaa gacagtcccc ctggagagta ttcctatggg
     1141 aaatcaataa ggaacctatt taaaaatatt ccttttgtcc ttctattgat cacttatggt
     1201 atcatgactg gagcatttta ttcagtctca acattattaa atcaaattat actgacatac
     1261 tataagggag aagaagtgaa tgctggaagg attgggctaa cgctagtgtt agctggaatg
     1321 gtgggctcta ttctttgtgg tttatggctg gattatacca aaacatacaa acatactact
     1381 ttgacagttt acattttgtc ttttgttgga atggttatat ttactttcac actaaacctt
     1441 gggcacatta tcatcgtgtt tgtcactgga gggttgcttg gtttcttcat gactggttac
     1501 ctccccttgg gttttgaatt tgctgttgaa atcacttacc ctgagtctga aggtacttca
     1561 tctggtcttc ttaatgctgc tgcacagata tttggaattt tattcacatt ggcgcaagga
     1621 aagctcacat cagactatag tcctaaggga gggaacattt tcctctgtgt ttggatgttt
     1681 gtaggcatca ttttaacagc attaatcaag tccgatctga aaagacacaa tataaataaa
     1741 ggagttacaa atggcgatat taaagctgta ccagttgata gccccacaga tgaagaatca
     1801 aaaactattc tgatgtccaa gcaatcagaa tcagcaattt gagaccagct gtccaagccc
     1861 cctcagtgtg aatacagtct acgaatatga cacttctaac ccaccaaatg acactattgg
     1921 gatgagactt ccagatgacc tcttaagatt tttcccattt cttacattct tgttagaaaa
     1981 tactttgtaa caggtactgt cagcgaccat aaaaactttt ctgtgtgcag acggaaccca
     2041 taactttggt cttaggcata tgttctcatt aagcgaagta gctcagacac agactcatta
     2101 ccttgagttc ttctttgtgc tgtcttccca ttcatcgcaa gaatgctaac gctatatttt
     2161 ttcactccaa cttgatatag agtagttttg tatccactac ctttttttac tctttttttc
     2221 ttcaatatat aactttctag taagaaaatt tcatcctatg tgttactggc tttttcatga
     2281 ttttttgtat cacaccttat acttttgcct tgaagattcc tgagataagg aaatctgtaa
     2341 taacttcagg tagcctaggt attcccattt agtggagacc tcttgaaatg ctgtctgttc
     2401 taattcagca aatcattctt tatggaatct ttatcattct ttgaggaatc ctttgcccag
     2461 gtctgtgctc cctcagtgtg ttgggggagt ggattctttt cttcaccaca gaatgtgcat
     2521 aggctccaaa ctgttggaac atctgctctt ttacatgctc agggtaagga gaataggacc
     2581 aaatgcattt ccacagtgcc tactactgca ttttgtttac agtgagaatc tcaatgttgt
     2641 acatgtcctg gctctctaag ctgataggga atatctttag agtaatggca tttaaacagc
     2701 cataatattt atattatgtc cacagaaaca caaaaagcca atcaggtatt cccttgaata
     2761 tccttgaagt gaattagcaa ttctgatttg ggtgtactat atgcatcgct ttatactgaa
     2821 attataacat tctctgtaac caaacgacag taaattatgt ggaatcttac cctggagaac
     2881 gtgttaccgg aagaacttag ctgggaatca ggaacttcag gtctatgtcc tggatctgtt
     2941 tctagtttcc ctgtaaatca gccagcactt tcctcatctg tataatgaat gtgtaaaatt
     3001 tgatctcaga gatctttttt gaattttaaa tgcactcatc gggggataga ccaaatcatt
     3061 gtaccacagg aacttaaatc tagctgtaga aaaattccct ggacagttga atgaacaact
     3121 gtggttgtta ccttgtagat acagggaact taaaatctgt ttttagaact cccctggtgg
     3181 cacagtgttt aagaatccgc ctgccaaggc aggggacacg ggttcaagcc ctggtccggg
     3241 aagatcccac atcctgcgga gcatctaagc ccacgcgcca caaatactga gcctgtgctc
     3301 tagagcccgc gagctgcaac tactgagcct gcgagccaca actactgaaa cccatgcacc
     3361 tagagcctgt gtctgcaaca agagaagcca ccacaatgaa aagcctgtgc accacaacga
     3421 agagtagccc ctgctcacca caactagaga aagccctcac gcagcaacga agacctaaca
     3481 cagccaaaaa taaattaatt ttaaaaatat gcatgacaaa atttttaaaa aataaaatca
     3541 aatctgtttt tagccttttt gttcagttgg tgatagctca ggcagaatag gctgaatcat
     3601 taacttcctt agatatttac gtcacagatt ttatggccaa aaatatattt taaggtacct
     3661 cctctaaata attgttttta cttttaaaca gtcaatgtta tttcaaataa tcatatactt
     3721 gtcaagttcc tgaggtttga acaaattaca gataaaagtt ggaatatttt atttctaaaa
     3781 agcgtatata catatatgtc atatgtattt ttccttgttg attagaaaaa gaatgaaata
     3841 tgttgtgaca aaacacaaaa tgaattgata atttttctgt attttgaatt aaatttgtct
     3901 gtaatacatc aaacaagaat gtcatgtaat tctatgtcgt atctttggaa tatggagttg
     3961 gtaactatca cttgtgtaaa ttttaatcaa gtgattttag aaagaaactg gatgctttca
     4021 aaagctcttg tatttataaa tgttgcaaat atagctttta ccttttgtga atgttggaga
     4081 aatgtcttta aaaatgtgtt ttaaaaatat gtgtaaa
//
LOCUS       XM_032610688            4595 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FLVCR heme transporter 1 (FLVCR1),
            transcript variant X4, mRNA.
ACCESSION   XM_032610688
VERSION     XM_032610688.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4595
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4595
                     /gene="FLVCR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 96% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742832"
     CDS             178..1758
                     /gene="FLVCR1"
                     /codon_start=1
                     /product="feline leukemia virus subgroup C
                     receptor-related protein 1 isoform X3"
                     /protein_id="XP_032466579.1"
                     /db_xref="GeneID:116742832"
                     /translation="MALPDDEEGTTVANGHPPANGYLPVPGDAPAGKVSAETQNGPKA
                     GCLALNGVSRDSPKAASGALDRPKTPLAPEEETQAQLLPKDSGEQTPAVEGTLVPRTA
                     LSARRFLVLLIFSLYSMVNAFQWIQYSIISNVFEGFYNVSSLHIDWLSMVYMLAYVPL
                     IFPATWLLDTRGLRLTALLGSGLNCLGAWIKCGSVQQHLFWVTMLGQCLCSVAQVFIL
                     GLPSHIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPNTQNNTQLLACNIST
                     MFYGTSAVATLLFILTVIAFKEKPQYPPSQAQAVLQDSPPGEYSYGKSIRNLFKNIPF
                     VLLLITYGIMTGAFYSVSTLLNQIILTYYKGEEVNAGRIGLTLVLAGMVGSILCGLWL
                     DYTKTYNFFMTGYLPLGFEFAVEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLTSD
                     YSPKGGNIFLCVWMFVGIILTALIKSDLKRHNINKGVTNGDIKAVSSEYFYDYTIEKC
                     VPRVSINPSTPSAFFLFL"
     misc_feature    493..1602
                     /gene="FLVCR1"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:475125"
     misc_feature    order(538..543,550..555,562..564,658..660,817..822,
                     826..834,841..843,901..903,910..915,922..924,1198..1200,
                     1207..1212,1219..1227,1234..1236,1318..1320,1330..1332,
                     1378..1383,1393..1395,1405..1407,1453..1455,1462..1467,
                     1474..1479,1486..1488)
                     /gene="FLVCR1"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341013"
ORIGIN      
        1 cagcgcgggt tgcagctccc ggttcagacc gaggctcact cggccgggga gagggtcgca
       61 ggagcagtgg gccgaggggt agggcttggg gtgcagggag ggcctcgggt cttgggctgc
      121 gggtgcaggg ctgggaggag ggcgggggcg ccaggcggcc ccagggagcc cagggacatg
      181 gcactgcccg acgatgagga ggggacaacg gtggcgaacg ggcacccgcc cgcgaacgga
      241 tacctcccgg tcccggggga cgcgcccgct ggaaaggtga gtgcggagac gcagaacggg
      301 cccaaagccg gctgcttggc cctgaatggg gtctctcggg acagccccaa ggccgcctcg
      361 ggagctctgg accggccgaa gactccgctg gccccggagg aggagaccca ggcccagttg
      421 ctgcccaagg actccggcga gcagacgccg gcggtcgagg gcaccctggt gccccggact
      481 gcgctctccg cgcggcgctt tttggtgcta ctgatcttca gcctgtactc gatggtgaac
      541 gcgtttcagt ggatccaata cagcatcatc agcaacgttt tcgagggctt ctacaacgtc
      601 tcctcgctgc acattgactg gctgtccatg gtatacatgc tggcctacgt gcccctcatc
      661 ttcccggcca cctggctgct ggataccaga ggcctgcggc tcaccgccct gctgggttcc
      721 ggcctcaact gcctgggagc ctggatcaag tgcggcagcg tgcagcagca tctcttctgg
      781 gtcaccatgt taggccagtg cctgtgctct gtggcccagg tgttcatcct cggcttgccc
      841 tcccacatcg cttcagtgtg gtttgggccc aaggaggtgt ccacagcttg cgccaccgcc
      901 gtgctaggta atcagcttgg aactgcagtt ggctttttgc tgccaccagt tttggtgccg
      961 aacacacaga ataacacaca actgctggct tgtaatatca gtaccatgtt ttatggaact
     1021 tcagctgtcg ccacactttt atttatttta acggtaattg cattcaaaga aaaacctcag
     1081 tatccaccaa gccaggctca agcagttctc caagacagtc cccctggaga gtattcctat
     1141 gggaaatcaa taaggaacct atttaaaaat attccttttg tccttctatt gatcacttat
     1201 ggtatcatga ctggagcatt ttattcagtc tcaacattat taaatcaaat tatactgaca
     1261 tactataagg gagaagaagt gaatgctgga aggattgggc taacgctagt gttagctgga
     1321 atggtgggct ctattctttg tggtttatgg ctggattata ccaaaacata caatttcttc
     1381 atgactggtt acctcccctt gggttttgaa tttgctgttg aaatcactta ccctgagtct
     1441 gaaggtactt catctggtct tcttaatgct gctgcacaga tatttggaat tttattcaca
     1501 ttggcgcaag gaaagctcac atcagactat agtcctaagg gagggaacat tttcctctgt
     1561 gtttggatgt ttgtaggcat cattttaaca gcattaatca agtccgatct gaaaagacac
     1621 aatataaata aaggagttac aaatggcgat attaaagctg taagtagtga atacttttat
     1681 gattatacta ttgagaaatg tgtgcctaga gtgagtataa acccgtctac cccatcagct
     1741 ttttttttat tcctgtgaat ctgtcataat ggcatatgcc agatacgtac tataaatttt
     1801 ttatcctctt attctttcta caggtaccag ttgatagccc cacagatgaa gaatcaaaaa
     1861 ctattctgat gtccaagcaa tcagaatcag caatttgagg tgaaaggaaa agttaatatc
     1921 atgtgataat tgagtaataa agcttagttt ataggttgtg ggaatggaca cttacttgaa
     1981 aattattgta tgactcctgt atgcagttac tgttcttatt tgttaattta agcaatattt
     2041 tgcttaaaat acttttgttt acatcatttt aacactacca tttatctaat gagtgtccca
     2101 tcttatatta ttgacctaaa agtaagcttc ttgacatttg gtttttaaaa gtaaatgtta
     2161 ttttcctaga aaatggaagc ttagaaggct ttctaaagtg ataatatgga ggtccaatcc
     2221 cttcaagtca cataggagta catgcaattt gtttatataa aactatccag tggaaccaag
     2281 tgtataatgt attcctaatt atctcccttt ccattgttca gaccagctgt ccaagccccc
     2341 tcagtgtgaa tacagtctac gaatatgaca cttctaaccc accaaatgac actattggga
     2401 tgagacttcc agatgacctc ttaagatttt tcccatttct tacattcttg ttagaaaata
     2461 ctttgtaaca ggtactgtca gcgaccataa aaacttttct gtgtgcagac ggaacccata
     2521 actttggtct taggcatatg ttctcattaa gcgaagtagc tcagacacag actcattacc
     2581 ttgagttctt ctttgtgctg tcttcccatt catcgcaaga atgctaacgc tatatttttt
     2641 cactccaact tgatatagag tagttttgta tccactacct ttttttactc tttttttctt
     2701 caatatataa ctttctagta agaaaatttc atcctatgtg ttactggctt tttcatgatt
     2761 ttttgtatca caccttatac ttttgccttg aagattcctg agataaggaa atctgtaata
     2821 acttcaggta gcctaggtat tcccatttag tggagacctc ttgaaatgct gtctgttcta
     2881 attcagcaaa tcattcttta tggaatcttt atcattcttt gaggaatcct ttgcccaggt
     2941 ctgtgctccc tcagtgtgtt gggggagtgg attcttttct tcaccacaga atgtgcatag
     3001 gctccaaact gttggaacat ctgctctttt acatgctcag ggtaaggaga ataggaccaa
     3061 atgcatttcc acagtgccta ctactgcatt ttgtttacag tgagaatctc aatgttgtac
     3121 atgtcctggc tctctaagct gatagggaat atctttagag taatggcatt taaacagcca
     3181 taatatttat attatgtcca cagaaacaca aaaagccaat caggtattcc cttgaatatc
     3241 cttgaagtga attagcaatt ctgatttggg tgtactatat gcatcgcttt atactgaaat
     3301 tataacattc tctgtaacca aacgacagta aattatgtgg aatcttaccc tggagaacgt
     3361 gttaccggaa gaacttagct gggaatcagg aacttcaggt ctatgtcctg gatctgtttc
     3421 tagtttccct gtaaatcagc cagcactttc ctcatctgta taatgaatgt gtaaaatttg
     3481 atctcagaga tcttttttga attttaaatg cactcatcgg gggatagacc aaatcattgt
     3541 accacaggaa cttaaatcta gctgtagaaa aattccctgg acagttgaat gaacaactgt
     3601 ggttgttacc ttgtagatac agggaactta aaatctgttt ttagaactcc cctggtggca
     3661 cagtgtttaa gaatccgcct gccaaggcag gggacacggg ttcaagccct ggtccgggaa
     3721 gatcccacat cctgcggagc atctaagccc acgcgccaca aatactgagc ctgtgctcta
     3781 gagcccgcga gctgcaacta ctgagcctgc gagccacaac tactgaaacc catgcaccta
     3841 gagcctgtgt ctgcaacaag agaagccacc acaatgaaaa gcctgtgcac cacaacgaag
     3901 agtagcccct gctcaccaca actagagaaa gccctcacgc agcaacgaag acctaacaca
     3961 gccaaaaata aattaatttt aaaaatatgc atgacaaaat ttttaaaaaa taaaatcaaa
     4021 tctgttttta gcctttttgt tcagttggtg atagctcagg cagaataggc tgaatcatta
     4081 acttccttag atatttacgt cacagatttt atggccaaaa atatatttta aggtacctcc
     4141 tctaaataat tgtttttact tttaaacagt caatgttatt tcaaataatc atatacttgt
     4201 caagttcctg aggtttgaac aaattacaga taaaagttgg aatattttat ttctaaaaag
     4261 cgtatataca tatatgtcat atgtattttt ccttgttgat tagaaaaaga atgaaatatg
     4321 ttgtgacaaa acacaaaatg aattgataat ttttctgtat tttgaattaa atttgtctgt
     4381 aatacatcaa acaagaatgt catgtaattc tatgtcgtat ctttggaata tggagttggt
     4441 aactatcact tgtgtaaatt ttaatcaagt gattttagaa agaaactgga tgctttcaaa
     4501 agctcttgta tttataaatg ttgcaaatat agcttttacc ttttgtgaat gttggagaaa
     4561 tgtctttaaa aatgtgtttt aaaaatatgt gtaaa
//
LOCUS       XR_004346613            1813 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116742864
            (LOC116742864), ncRNA.
ACCESSION   XR_004346613
VERSION     XR_004346613.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1813
                     /gene="LOC116742864"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742864"
     ncRNA           1..1813
                     /ncRNA_class="lncRNA"
                     /gene="LOC116742864"
                     /product="uncharacterized LOC116742864"
                     /db_xref="GeneID:116742864"
ORIGIN      
        1 ccccagaggg cgcccgccct ctggtaggct tggctggacg gcgtgggagg agggaggcgc
       61 ggagtagggc ggggcgtggg ctggatggga gcggtaattc ccgttggctt gacggatggg
      121 gcgtgtcgta tgtagatatc tcagcgcagc gtctgctggt tcgtgatctg gtggtgaaag
      181 acgacataat ctcccgtagt gtggaagtga atcgagggct gttggttgca agtgcatgga
      241 tcagctagct gtctggaagg ggcaggaagg ctcggggctg cggggaggaa agtgaccgtg
      301 tgtgtacagt ataaggcgtc tgagggtgtg tcagggccga ggaagcatag ttcatactta
      361 cctggcagag aaaatattat gacctcgaag gtggttttct caggttgagg cttatctgtt
      421 gtacttcgaa tttgttgacg cctcccattt ccccaaatgt gagaaactcg actgcaaaat
      481 ttgtgatagt gggggattgc gttcgcgcct tcccctggtt acttcgacat attaaaaaca
      541 gcgtcaattt tagttttgtt ggcagtagtt tgagctgtga ttgtggtgtt ttttaccagt
      601 cagtgtcagt gactgttacc tgaggtttaa ctgtgtgttt taagttctct gctgtgtttc
      661 tggaaggtag tagagagggc cgatgtctga taatgcaacg tatcggggcg tggaaaatga
      721 agaagcgttt ttgttctgac ttgcgtgaga tcagaggcaa ggaaagtttt gcaggatcgt
      781 gagcagatgc ttcaggaaac tcaatgaaga aatgaagtta tcaagaaaag aaaaattgga
      841 attctcgtcg gtctgttact acttctagtg tccaaagtct aaaaatagga gtgttctgtt
      901 actgctgttg gccgagaaga gtgttttgtt actgctgttt gccagaagct gaacaccttg
      961 ctgggtcaac gatccagagc agtaggaaga aatgtgagag gagctctagg ttgttgcaag
     1021 cctgcctgtt atcagctgat aaattgcatg tgcaagtagt aaaaagcgct ggtgacttct
     1081 ctaacctttt cagggtccaa atgaatgtgg tagccacttc catttccgtt ttcaaagtct
     1141 cggctgatgt cctatggttg aagttaaccc agaactatgc ggaaaaggga gttctgggag
     1201 atttttttct agcctagtaa tattgacacg aatcttacac aaaaaacatc ttctgcactt
     1261 gacatccata tacagggaga tatctatatt tatatatctt ttccttttcc tcctttggta
     1321 gccattctta actttcaaac aaagccaata acaaaattat gcttatctca aacagtgaaa
     1381 acatgccaat ctttccacag aagagggtaa agtttgaatg ttttttgttc ttccagcaga
     1441 gtcacattct ttttacctta ggtatgctgt aataaatact gcgattaaaa gttaactcct
     1501 agcaacagat tttgttagct ggtagtgaga tgaaaaagga aaagagaaaa atattggttg
     1561 atacatataa aactattagt aatataaaaa ggaaatattt atacctgtta tggacctcct
     1621 ttctgcaact gtcagtgata tctataactg tcttcttagc tactatcaac aaataaaatt
     1681 cagccagata aatgtgaaca tcttgttgtc tttattcaac gatttaggga ctgctgtcat
     1741 tatcaggggc ggagttgttc tctgctgttg actgtttggg caccactagt gattgtagct
     1801 agattagcca tga
//
LOCUS       XM_032610710            2511 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase family AAA domain-containing
            protein 3 (LOC116742869), mRNA.
ACCESSION   XM_032610710
VERSION     XM_032610710.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2511
                     /gene="LOC116742869"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742869"
     CDS             108..1868
                     /gene="LOC116742869"
                     /codon_start=1
                     /product="ATPase family AAA domain-containing protein 3"
                     /protein_id="XP_032466601.1"
                     /db_xref="GeneID:116742869"
                     /translation="MSWLFGIKGPKGEGAGPPLPLPPVQPGAEGGGDRGAGDRPAPKD
                     KWSNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEHQAKLKEYEAAVEQL
                     KGEQVRVQAEERRKTLSEETRQHQARAQYQDKLSRQRYEDQLKQQQLLNEENLRKQEE
                     SVQKQEALRRATVEREMELRHKNEMLRVEAEARARAKAERDNADITREQIRLKAAEQR
                     QTILESIRMAGTVFGEGFQAFVTDWDKVTATVAGLTLLAVGIYSAKNATSAIGRYVET
                     RLGKPSLVRETSRITVLELLRHPVQVSRRLLSKPQDALEGVVLSPSLEARVRDIAIAT
                     RNTRKNRSVYRNILMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGRDGVTAMH
                     KVFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQHSSKFMLVL
                     ATNQPEQLDWAINDRIGEMVGFDLPRREARERLVRLYFDKYVLKPATEGKQRLKLAQF
                     DYGKKCSEIAQLTEGMSGREISQLAVAWQAMAYASEDGVLTEAMMDARVQDAIQQHKQ
                     KMQWLQAEGSRPLLPSSQAE"
     misc_feature    228..962
                     /gene="LOC116742869"
                     /note="ATPase family AAA domain-containing protein 3,
                     N-terminal; Region: ATAD3_N; pfam12037"
                     /db_xref="CDD:463442"
     misc_feature    1074..1523
                     /gene="LOC116742869"
                     /note="ATPase domains of ATPase AAA-domain protein 3A
                     (ATAD3A), -3B, and -3C, and similar ATPase domains;
                     Region: RecA-like_ATAD3-like; cd19512"
                     /db_xref="CDD:410920"
     misc_feature    order(1161..1163,1173..1181,1227..1229,1233..1238,
                     1335..1340)
                     /gene="LOC116742869"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:410920"
ORIGIN      
        1 cgcctgcgca gtctctgccg ccggctcgag gcgcgtggac cgtgctctgc gtcgcgcgcg
       61 tccgcacggc tacgggttcc ggcggcggcg cgtggagctc gcgagacatg tcgtggctct
      121 tcggcatcaa gggccccaag ggcgaaggcg cggggccgcc gcttccgctg ccgcccgtgc
      181 agcccggggc cgagggcggc ggggaccgcg gcgcggggga ccggcctgcg cccaaggaca
      241 aatggagcaa cttcgacccg acgggcctgg agcgcgcggc caaggcggca cgcgagctgg
      301 agcattcgcg acacgccaag gaggcgctga gtctggcaca gatgcaggag cagacgcttc
      361 agctggaaca tcaggcgaag ctcaaggagt atgaggccgc cgtggagcag ctgaagggcg
      421 agcaggtccg ggtgcaggcc gaggagcgga ggaagactct gagtgaggag acgcggcagc
      481 accaggccag ggcccagtac caggacaagc tgtcccggca gcgctacgag gaccagctga
      541 agcagcagca acttctcaac gaggagaact tacggaagca ggaggagtcc gtgcagaagc
      601 aggaggccct gcggcgagcc accgtggagc gggagatgga gcttcggcac aagaacgaga
      661 tgctgcgggt ggaggctgag gcgcgtgccc gggccaaggc tgagcgcgac aatgctgaca
      721 tcacccgtga gcagatccgc ctgaaggctg ctgagcagcg ccagaccatc ctggagtcca
      781 tcaggatggc tggcaccgtg tttggtgaag gattccaggc ctttgtgaca gactgggaca
      841 aagtgacagc cacggtggct gggctgacgc tgctggccgt tggcatctat tccgccaaga
      901 acgccacgtc ggccataggg cgctacgtgg agacccggct ggggaagccg tccctggtgc
      961 gggagacctc gcgaatcacg gtgctggagc tgctgcggca ccctgtgcag gtcagcaggc
     1021 ggctcctcag taagcctcag gatgcattgg agggcgtcgt cctcagcccc agcctggagg
     1081 ctcgcgtgcg ggacatcgcc attgccacga ggaacaccag gaagaacagg agtgtgtacc
     1141 ggaacatcct catgtacggg ccacctggga cgggcaagac actgtttgcc aagaaactcg
     1201 cgctgcactc aggcatggac tacgccatca tgacgggtgg ggatgtggcc cccatggggc
     1261 gggacggcgt gaccgccatg cacaaggtct ttgactgggc caacaccagc cggcgaggcc
     1321 tcctgctctt cgtggacgaa gcagatgcgt ttctcaggaa gcgggcgact gagaagatca
     1381 gtgaggacct cagggccacc ctgaacgcgt tcctgcaccg gacaggccag cacagcagca
     1441 agttcatgct ggtcctggcc accaaccagc ccgagcagct tgactgggcc atcaacgacc
     1501 gcatcggcga gatggtcggc tttgacctgc cgcggcgaga ggcgcgggag cgcctggtga
     1561 gactgtattt tgacaagtat gttcttaaac cagccacaga aggaaagcag cgcttgaagc
     1621 tggcccagtt tgattacggg aagaagtgct cagagatcgc acagctgacg gagggcatgt
     1681 cgggccggga gatctcccag cttgctgtgg cgtggcaggc catggcgtat gcctctgagg
     1741 atggggtcct caccgaggcc atgatggacg cccgggtcca ggatgccatc cagcagcaca
     1801 agcagaagat gcagtggctg caggcagagg ggagccgacc cctgctccca agctcacagg
     1861 ccgagtgagc cgggcctgga cacctgcagc acgctgacct ggtgccccag ctcccagcgg
     1921 atgtggtgac accacacagc cgcccccctc ctggcgtgtg taaccttcct ctggtcaggc
     1981 ccagggcggc agggcagcat taaaggcctc ggctcaggac cagcagcgcg gtgcagcctc
     2041 gaggtggggt tggttcccct gaccccgcag ccgcccccag gacactcctg ggagacgtgt
     2101 ccctccaagc ccggcccaga cggggagcag gcactgtccg ccatgccggg ggcagtggcc
     2161 aagctggcag tacagcttcc caggcagatg ctggctgctg cagcagtgac cagcagtagg
     2221 gggcccggcc aagggagggg acctgacctt gcccagtccc tcccagggcc agacccgagc
     2281 ccacgatgag cagagctggc ctctgtgcag cccagctgtc ctcggaaggg cagtgccctt
     2341 gaggtctgtg aacccgtaaa gccgggtgcc aagaaccagc ccagcgaccc gcgatggcca
     2401 aggacgtgtg gagcgggggg actgcccagc ccacggaagg cgaagctctc ccggattgga
     2461 attgggggtc tttttatcca gaatctaata aaaactgaca gatacgtctc a
//
LOCUS       XM_032610723            3255 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 65 (ANKRD65),
            transcript variant X1, mRNA.
ACCESSION   XM_032610723
VERSION     XM_032610723.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3255
                     /gene="ANKRD65"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742872"
     CDS             768..2324
                     /gene="ANKRD65"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 65
                     isoform X1"
                     /protein_id="XP_032466614.1"
                     /db_xref="GeneID:116742872"
                     /translation="MTATCTACSRDAVGDTPAGTAAEAPCNARQALLPSTCATELLAL
                     AHACEDFTMDSRVSEPREQDLTEAGAEQELRWLELGSEEAPGAGTEGPSAPQAWGRLL
                     QAVWKGHVGLVTQLLRQGASVEERDRAGRTPLHLAVLRGHVPLVRLLLQRGARAVAAD
                     RAGRTPLHEAAWHGPSRAAELLLQRGASANVRCGAGLTPLHWAAALGRTLLARRLLDA
                     PGPGPAAADAHGWMATHWAAAGGRLPVLELLAAGGGAGLDGALLVAAAAGQSAALRLL
                     LTHGARVDARDGTGATALGVAADLGRRQDMEVLLEHGADSSLKDRHGRSALHRAAAGG
                     HLLAVQLLAAWGADVDARDTLGLTPLHHAARGGHMEVAGHLLARGAKVDAAGWLHVTP
                     LNLAVERGHGSTAELLLSWGASPTQRTQWGEVAQDLGPAVSTACRGEQEVPHGPQACR
                     ARAGPEAASSHGLQGVQAPLCWSEAACQGARENTPEVPGEEGSSGWSPSKKRVADLEL
                     FQTPRATSAL"
     misc_feature    <1044..1247
                     /gene="ANKRD65"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    1068..1148
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1071..1076,1083..1091,1095..1100,1110..1112,
                     1119..1121,1146..1148,1152..1154,1158..1160,1170..1175,
                     1182..1190,1194..1199,1209..1211,1218..1220,1245..1247,
                     1251..1253,1257..1259,1269..1274,1281..1289,1293..1298,
                     1308..1310,1317..1319)
                     /gene="ANKRD65"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1152..1247
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1200..2060
                     /gene="ANKRD65"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    1251..1343
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1452..1628
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1635..1727
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1731..1733,1737..1739,1749..1754,1761..1769,
                     1773..1778,1788..1790,1797..1799,1824..1826,1830..1832,
                     1836..1838,1848..1853,1860..1868,1872..1877,1887..1889,
                     1896..1898,1923..1925,1929..1931,1935..1937,1947..1952,
                     1959..1967,1971..1976,1986..1988,1995..1997)
                     /gene="ANKRD65"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1731..1826
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1830..1925
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1929..2015
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 ggctggctgt gaggcaggca tttctcagcc gaggatggga gatggagacc caggcggtaa
       61 atggcccgag taggagcccc ttgaggggag gctcagataa tagctctctc tgctctccca
      121 tggccctttc ctaagttggc atctgaccct gaggccctac cctggggtgt tgccagctgg
      181 cgccaccttg tctactgcgg cccagcgttc ggccctcttc ccccggcccc cccttcccca
      241 gatgggcaga aaggggccca tctgcctata ccctccctat cccagaccaa gccataaccc
      301 cttccatacg tggggaaagc catcccaggg gaggaggggt cttcaggggg gctgtgtgtt
      361 gggggaggct gggaggatgg ggactgtgga ctggttaaat ctgacaatat ctttatcttc
      421 tcttcctgga acccttctcc tcttcccacc ctgcccagct gtccaggccc tggcagctcc
      481 tggtacaagg ctgagaggcc tcaggggagg ggagagagcc ttccccttgg gtggcaaaca
      541 aaagcccttc ttttgctgtg gccagtggcg gggggagggg ggcttggcag gagaaggagc
      601 tcttcaggga ggggcacacg tgcctccagg gacctgcact ccccgaggac cccagacagt
      661 ccctcagccc cgcgcccgtg gacggctcag ctcaccctcg agtggcacag gaatcccagg
      721 cctctcaagc tcaccagcac ccctcagaca cgtagggatg ctggacgatg acagcgacat
      781 gcacagcttg ttcaagggac gcggttggag acacgccggc cgggacagct gctgaggccc
      841 cctgcaatgc acgccaagcc ctgctgccca gcacgtgtgc aactgaactg cttgcactgg
      901 cacacgcgtg tgaagatttc acgatggact ctagggtctc tgagccccgg gagcaggacc
      961 tgacagaggc aggggcagag caggaactac ggtggttgga gctgggctcc gaggaggccc
     1021 caggagctgg gacagagggg cccagcgccc cacaggcctg ggggcgcctg ctgcaggccg
     1081 tgtggaaggg tcacgtgggc ctggtgactc agctactgcg gcaaggggcc agtgtggagg
     1141 agagggaccg cgcgggcagg accccgctgc atctggccgt gctgcgtggc cacgtgccgc
     1201 tggtgcgtct cctgctgcag cgcggggccc gggccgtagc tgcagaccgc gcggggcgca
     1261 cgccgctgca cgaggccgcc tggcacgggc cctcgcgggc ggccgagctg ctcctacagc
     1321 gcggggcgtc agcgaacgtg cgctgtgggg ccggcctcac gccactgcac tgggccgccg
     1381 cgctgggccg cacgttgctg gccaggcgcc tgctggacgc accgggcccg ggccccgcgg
     1441 cggcggacgc acacggctgg atggcaacac actgggcggc cgcgggcggc cggctgccgg
     1501 tgctcgagct gctggcggcg ggcggtggcg cgggcctgga cggcgccctg ctcgtggcgg
     1561 ccgcggccgg gcagtcggca gcgctgcgcc tcctcctgac gcacggggcg cgggtggacg
     1621 cccgggacgg cacgggggcc acggcgctgg gtgtcgctgc cgacctgggc cgccggcagg
     1681 acatggaggt gctacttgag catggggccg actcaagcct caaggacagg cacggccgct
     1741 ctgcactcca cagggctgct gccggtggac atctgctcgc cgtccaactg ctggccgcct
     1801 ggggagcaga cgtggacgct cgggacacgt tgggcctcac ccccctgcac cacgctgccc
     1861 ggggaggcca catggaggtc gccggccacc tcctggccag gggcgcgaag gtcgacgctg
     1921 ctggctggct ccatgtgacc cccctaaatc ttgccgtgga gcgcggccat ggctccaccg
     1981 cagagctttt gctgagctgg ggggccagcc ccacccagag gacacagtgg ggggaggtgg
     2041 cccaggatct ggggcctgcc gtctccacag cctgccgtgg agagcaggag gtgccccatg
     2101 ggccccaggc ctgcagggcc agagcaggac cagaggctgc aagctcccac ggccttcagg
     2161 gcgtgcaggc tcctctctgc tggtctgagg ctgcctgcca gggtgcacgg gagaacaccc
     2221 cagaggttcc tggagaagaa ggaagcagtg gctggagccc gagcaagaag cgtgtggctg
     2281 acctggaact attccagact cccagggcca cgtcagccct gtagcttcag ccctgtgcac
     2341 gctctttggc ggagagactg agtcgtggcc acagaactga ccaaaaccca atgggttcct
     2401 gtttgtgcgt cccccatcgg ggtgtcagcc tcggtgctcc ccccgggcac accggcactc
     2461 ttactgtgtt tccttagatt cggtatttgt ctcttggcac ccactcacta atgacagggc
     2521 cagttgtcct cctctcccct gctgtcccga cccatgccct gaacggctgc cttctctcac
     2581 gtgcccagct gacatccccc tgcccgaagt cacccagggc caggcctgcc tctgtgcacc
     2641 aaggcccact ggattatcaa acaaaccaat cagaagctgt ttccctgccc tgccttgcct
     2701 ttcctgtggg aaccccaata aaggcctgag ccttccccgg gcccctgctc ttaccacccg
     2761 atcgacactg ctgtttctgc ctgtgtccct gtggggcgtg gtgtgccctc ccctcaggaa
     2821 atgtaaggca taaaaatctg ctttcaggag cttccctcat ggtgcagtgg ttaggaatct
     2881 gcctgccgat gcaggggaca cagctttgag ccctggtccg ggaagatccc acatgccacg
     2941 gagcaactaa gctcgtgtgc cacaactact gagcctgcgc tctagagcct gcaagccaca
     3001 actactgaag cctgtgcacc acaactactg aacccatgcg cctagagccc gtgctccgca
     3061 acaagagaag ccaccgcaat gagaggcccg tgcaccgcaa cgaagagcag gccccgctcg
     3121 ccacaactag agagagcccc tgtgtgcagc aacgaagacc caacgcagcc aaaaaatacc
     3181 cgctttcagt agctttagcc tctccctgtc atcactcagc catctctgta aattaaaaac
     3241 cctgcagtgc aacag
//
LOCUS       XM_032610731            2868 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 65 (ANKRD65),
            transcript variant X2, mRNA.
ACCESSION   XM_032610731
VERSION     XM_032610731.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2868
                     /gene="ANKRD65"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742872"
     CDS             381..1937
                     /gene="ANKRD65"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 65
                     isoform X1"
                     /protein_id="XP_032466622.1"
                     /db_xref="GeneID:116742872"
                     /translation="MTATCTACSRDAVGDTPAGTAAEAPCNARQALLPSTCATELLAL
                     AHACEDFTMDSRVSEPREQDLTEAGAEQELRWLELGSEEAPGAGTEGPSAPQAWGRLL
                     QAVWKGHVGLVTQLLRQGASVEERDRAGRTPLHLAVLRGHVPLVRLLLQRGARAVAAD
                     RAGRTPLHEAAWHGPSRAAELLLQRGASANVRCGAGLTPLHWAAALGRTLLARRLLDA
                     PGPGPAAADAHGWMATHWAAAGGRLPVLELLAAGGGAGLDGALLVAAAAGQSAALRLL
                     LTHGARVDARDGTGATALGVAADLGRRQDMEVLLEHGADSSLKDRHGRSALHRAAAGG
                     HLLAVQLLAAWGADVDARDTLGLTPLHHAARGGHMEVAGHLLARGAKVDAAGWLHVTP
                     LNLAVERGHGSTAELLLSWGASPTQRTQWGEVAQDLGPAVSTACRGEQEVPHGPQACR
                     ARAGPEAASSHGLQGVQAPLCWSEAACQGARENTPEVPGEEGSSGWSPSKKRVADLEL
                     FQTPRATSAL"
     misc_feature    <657..860
                     /gene="ANKRD65"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    681..761
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(684..689,696..704,708..713,723..725,732..734,
                     759..761,765..767,771..773,783..788,795..803,807..812,
                     822..824,831..833,858..860,864..866,870..872,882..887,
                     894..902,906..911,921..923,930..932)
                     /gene="ANKRD65"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    765..860
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    813..1673
                     /gene="ANKRD65"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    864..956
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1065..1241
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1248..1340
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1344..1346,1350..1352,1362..1367,1374..1382,
                     1386..1391,1401..1403,1410..1412,1437..1439,1443..1445,
                     1449..1451,1461..1466,1473..1481,1485..1490,1500..1502,
                     1509..1511,1536..1538,1542..1544,1548..1550,1560..1565,
                     1572..1580,1584..1589,1599..1601,1608..1610)
                     /gene="ANKRD65"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1344..1439
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1443..1538
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1542..1628
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gggggggggc gctggggctg gctgtgaggc aggcatttct cagccgagga tgggagatgg
       61 agacccaggc gctgtccagg ccctggcagc tcctggtaca aggctgagag gcctcagggg
      121 aggggagaga gccttcccct tgggtggcaa acaaaagccc ttcttttgct gtggccagtg
      181 gcggggggag gggggcttgg caggagaagg agctcttcag ggaggggcac acgtgcctcc
      241 agggacctgc actccccgag gaccccagac agtccctcag ccccgcgccc gtggacggct
      301 cagctcaccc tcgagtggca caggaatccc aggcctctca agctcaccag cacccctcag
      361 acacgtaggg atgctggacg atgacagcga catgcacagc ttgttcaagg gacgcggttg
      421 gagacacgcc ggccgggaca gctgctgagg ccccctgcaa tgcacgccaa gccctgctgc
      481 ccagcacgtg tgcaactgaa ctgcttgcac tggcacacgc gtgtgaagat ttcacgatgg
      541 actctagggt ctctgagccc cgggagcagg acctgacaga ggcaggggca gagcaggaac
      601 tacggtggtt ggagctgggc tccgaggagg ccccaggagc tgggacagag gggcccagcg
      661 ccccacaggc ctgggggcgc ctgctgcagg ccgtgtggaa gggtcacgtg ggcctggtga
      721 ctcagctact gcggcaaggg gccagtgtgg aggagaggga ccgcgcgggc aggaccccgc
      781 tgcatctggc cgtgctgcgt ggccacgtgc cgctggtgcg tctcctgctg cagcgcgggg
      841 cccgggccgt agctgcagac cgcgcggggc gcacgccgct gcacgaggcc gcctggcacg
      901 ggccctcgcg ggcggccgag ctgctcctac agcgcggggc gtcagcgaac gtgcgctgtg
      961 gggccggcct cacgccactg cactgggccg ccgcgctggg ccgcacgttg ctggccaggc
     1021 gcctgctgga cgcaccgggc ccgggccccg cggcggcgga cgcacacggc tggatggcaa
     1081 cacactgggc ggccgcgggc ggccggctgc cggtgctcga gctgctggcg gcgggcggtg
     1141 gcgcgggcct ggacggcgcc ctgctcgtgg cggccgcggc cgggcagtcg gcagcgctgc
     1201 gcctcctcct gacgcacggg gcgcgggtgg acgcccggga cggcacgggg gccacggcgc
     1261 tgggtgtcgc tgccgacctg ggccgccggc aggacatgga ggtgctactt gagcatgggg
     1321 ccgactcaag cctcaaggac aggcacggcc gctctgcact ccacagggct gctgccggtg
     1381 gacatctgct cgccgtccaa ctgctggccg cctggggagc agacgtggac gctcgggaca
     1441 cgttgggcct cacccccctg caccacgctg cccggggagg ccacatggag gtcgccggcc
     1501 acctcctggc caggggcgcg aaggtcgacg ctgctggctg gctccatgtg acccccctaa
     1561 atcttgccgt ggagcgcggc catggctcca ccgcagagct tttgctgagc tggggggcca
     1621 gccccaccca gaggacacag tggggggagg tggcccagga tctggggcct gccgtctcca
     1681 cagcctgccg tggagagcag gaggtgcccc atgggcccca ggcctgcagg gccagagcag
     1741 gaccagaggc tgcaagctcc cacggccttc agggcgtgca ggctcctctc tgctggtctg
     1801 aggctgcctg ccagggtgca cgggagaaca ccccagaggt tcctggagaa gaaggaagca
     1861 gtggctggag cccgagcaag aagcgtgtgg ctgacctgga actattccag actcccaggg
     1921 ccacgtcagc cctgtagctt cagccctgtg cacgctcttt ggcggagaga ctgagtcgtg
     1981 gccacagaac tgaccaaaac ccaatgggtt cctgtttgtg cgtcccccat cggggtgtca
     2041 gcctcggtgc tccccccggg cacaccggca ctcttactgt gtttccttag attcggtatt
     2101 tgtctcttgg cacccactca ctaatgacag ggccagttgt cctcctctcc cctgctgtcc
     2161 cgacccatgc cctgaacggc tgccttctct cacgtgccca gctgacatcc ccctgcccga
     2221 agtcacccag ggccaggcct gcctctgtgc accaaggccc actggattat caaacaaacc
     2281 aatcagaagc tgtttccctg ccctgccttg cctttcctgt gggaacccca ataaaggcct
     2341 gagccttccc cgggcccctg ctcttaccac ccgatcgaca ctgctgtttc tgcctgtgtc
     2401 cctgtggggc gtggtgtgcc ctcccctcag gaaatgtaag gcataaaaat ctgctttcag
     2461 gagcttccct catggtgcag tggttaggaa tctgcctgcc gatgcagggg acacagcttt
     2521 gagccctggt ccgggaagat cccacatgcc acggagcaac taagctcgtg tgccacaact
     2581 actgagcctg cgctctagag cctgcaagcc acaactactg aagcctgtgc accacaacta
     2641 ctgaacccat gcgcctagag cccgtgctcc gcaacaagag aagccaccgc aatgagaggc
     2701 ccgtgcaccg caacgaagag caggccccgc tcgccacaac tagagagagc ccctgtgtgc
     2761 agcaacgaag acccaacgca gccaaaaaat acccgctttc agtagcttta gcctctccct
     2821 gtcatcactc agccatctct gtaaattaaa aaccctgcag tgcaacag
//
LOCUS       XM_032610737            2575 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 65 (ANKRD65),
            transcript variant X3, mRNA.
ACCESSION   XM_032610737
VERSION     XM_032610737.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2575
                     /gene="ANKRD65"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742872"
     CDS             88..1644
                     /gene="ANKRD65"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 65
                     isoform X1"
                     /protein_id="XP_032466628.1"
                     /db_xref="GeneID:116742872"
                     /translation="MTATCTACSRDAVGDTPAGTAAEAPCNARQALLPSTCATELLAL
                     AHACEDFTMDSRVSEPREQDLTEAGAEQELRWLELGSEEAPGAGTEGPSAPQAWGRLL
                     QAVWKGHVGLVTQLLRQGASVEERDRAGRTPLHLAVLRGHVPLVRLLLQRGARAVAAD
                     RAGRTPLHEAAWHGPSRAAELLLQRGASANVRCGAGLTPLHWAAALGRTLLARRLLDA
                     PGPGPAAADAHGWMATHWAAAGGRLPVLELLAAGGGAGLDGALLVAAAAGQSAALRLL
                     LTHGARVDARDGTGATALGVAADLGRRQDMEVLLEHGADSSLKDRHGRSALHRAAAGG
                     HLLAVQLLAAWGADVDARDTLGLTPLHHAARGGHMEVAGHLLARGAKVDAAGWLHVTP
                     LNLAVERGHGSTAELLLSWGASPTQRTQWGEVAQDLGPAVSTACRGEQEVPHGPQACR
                     ARAGPEAASSHGLQGVQAPLCWSEAACQGARENTPEVPGEEGSSGWSPSKKRVADLEL
                     FQTPRATSAL"
     misc_feature    <364..567
                     /gene="ANKRD65"
                     /note="Voltage-dependent potassium channel; Provisional;
                     Region: PLN03192"
                     /db_xref="CDD:215625"
     misc_feature    388..468
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(391..396,403..411,415..420,430..432,439..441,
                     466..468,472..474,478..480,490..495,502..510,514..519,
                     529..531,538..540,565..567,571..573,577..579,589..594,
                     601..609,613..618,628..630,637..639)
                     /gene="ANKRD65"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    472..567
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    520..1380
                     /gene="ANKRD65"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    571..663
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    772..948
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    955..1047
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1051..1053,1057..1059,1069..1074,1081..1089,
                     1093..1098,1108..1110,1117..1119,1144..1146,1150..1152,
                     1156..1158,1168..1173,1180..1188,1192..1197,1207..1209,
                     1216..1218,1243..1245,1249..1251,1255..1257,1267..1272,
                     1279..1287,1291..1296,1306..1308,1315..1317)
                     /gene="ANKRD65"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1051..1146
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1150..1245
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1249..1335
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gctcagccgg ccacaccacc ccctgctgcc agcatcacgg cctctcaagc tcaccagcac
       61 ccctcagaca cgtagggatg ctggacgatg acagcgacat gcacagcttg ttcaagggac
      121 gcggttggag acacgccggc cgggacagct gctgaggccc cctgcaatgc acgccaagcc
      181 ctgctgccca gcacgtgtgc aactgaactg cttgcactgg cacacgcgtg tgaagatttc
      241 acgatggact ctagggtctc tgagccccgg gagcaggacc tgacagaggc aggggcagag
      301 caggaactac ggtggttgga gctgggctcc gaggaggccc caggagctgg gacagagggg
      361 cccagcgccc cacaggcctg ggggcgcctg ctgcaggccg tgtggaaggg tcacgtgggc
      421 ctggtgactc agctactgcg gcaaggggcc agtgtggagg agagggaccg cgcgggcagg
      481 accccgctgc atctggccgt gctgcgtggc cacgtgccgc tggtgcgtct cctgctgcag
      541 cgcggggccc gggccgtagc tgcagaccgc gcggggcgca cgccgctgca cgaggccgcc
      601 tggcacgggc cctcgcgggc ggccgagctg ctcctacagc gcggggcgtc agcgaacgtg
      661 cgctgtgggg ccggcctcac gccactgcac tgggccgccg cgctgggccg cacgttgctg
      721 gccaggcgcc tgctggacgc accgggcccg ggccccgcgg cggcggacgc acacggctgg
      781 atggcaacac actgggcggc cgcgggcggc cggctgccgg tgctcgagct gctggcggcg
      841 ggcggtggcg cgggcctgga cggcgccctg ctcgtggcgg ccgcggccgg gcagtcggca
      901 gcgctgcgcc tcctcctgac gcacggggcg cgggtggacg cccgggacgg cacgggggcc
      961 acggcgctgg gtgtcgctgc cgacctgggc cgccggcagg acatggaggt gctacttgag
     1021 catggggccg actcaagcct caaggacagg cacggccgct ctgcactcca cagggctgct
     1081 gccggtggac atctgctcgc cgtccaactg ctggccgcct ggggagcaga cgtggacgct
     1141 cgggacacgt tgggcctcac ccccctgcac cacgctgccc ggggaggcca catggaggtc
     1201 gccggccacc tcctggccag gggcgcgaag gtcgacgctg ctggctggct ccatgtgacc
     1261 cccctaaatc ttgccgtgga gcgcggccat ggctccaccg cagagctttt gctgagctgg
     1321 ggggccagcc ccacccagag gacacagtgg ggggaggtgg cccaggatct ggggcctgcc
     1381 gtctccacag cctgccgtgg agagcaggag gtgccccatg ggccccaggc ctgcagggcc
     1441 agagcaggac cagaggctgc aagctcccac ggccttcagg gcgtgcaggc tcctctctgc
     1501 tggtctgagg ctgcctgcca gggtgcacgg gagaacaccc cagaggttcc tggagaagaa
     1561 ggaagcagtg gctggagccc gagcaagaag cgtgtggctg acctggaact attccagact
     1621 cccagggcca cgtcagccct gtagcttcag ccctgtgcac gctctttggc ggagagactg
     1681 agtcgtggcc acagaactga ccaaaaccca atgggttcct gtttgtgcgt cccccatcgg
     1741 ggtgtcagcc tcggtgctcc ccccgggcac accggcactc ttactgtgtt tccttagatt
     1801 cggtatttgt ctcttggcac ccactcacta atgacagggc cagttgtcct cctctcccct
     1861 gctgtcccga cccatgccct gaacggctgc cttctctcac gtgcccagct gacatccccc
     1921 tgcccgaagt cacccagggc caggcctgcc tctgtgcacc aaggcccact ggattatcaa
     1981 acaaaccaat cagaagctgt ttccctgccc tgccttgcct ttcctgtggg aaccccaata
     2041 aaggcctgag ccttccccgg gcccctgctc ttaccacccg atcgacactg ctgtttctgc
     2101 ctgtgtccct gtggggcgtg gtgtgccctc ccctcaggaa atgtaaggca taaaaatctg
     2161 ctttcaggag cttccctcat ggtgcagtgg ttaggaatct gcctgccgat gcaggggaca
     2221 cagctttgag ccctggtccg ggaagatccc acatgccacg gagcaactaa gctcgtgtgc
     2281 cacaactact gagcctgcgc tctagagcct gcaagccaca actactgaag cctgtgcacc
     2341 acaactactg aacccatgcg cctagagccc gtgctccgca acaagagaag ccaccgcaat
     2401 gagaggcccg tgcaccgcaa cgaagagcag gccccgctcg ccacaactag agagagcccc
     2461 tgtgtgcagc aacgaagacc caacgcagcc aaaaaatacc cgctttcagt agctttagcc
     2521 tctccctgtc atcactcagc catctctgta aattaaaaac cctgcagtgc aacag
//
LOCUS       XM_032610742            2364 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 65 (ANKRD65),
            transcript variant X4, mRNA.
ACCESSION   XM_032610742
VERSION     XM_032610742.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2364
                     /gene="ANKRD65"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742872"
     CDS             768..1715
                     /gene="ANKRD65"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 65
                     isoform X2"
                     /protein_id="XP_032466633.1"
                     /db_xref="GeneID:116742872"
                     /translation="MTATCTACSRDAVGDTPAGTAAEAPCNARQALLPSTCATELLAL
                     AHACEDFTMDSRVSEPREQDLTEAGAEQELRWLELGSEEAPGAGTEGPSAPQAWGRLL
                     QAVWKGHVGLVTQLLRQGASVEERAAAGGHLLAVQLLAAWGADVDARDTLGLTPLHHA
                     ARGGHMEVAGHLLARGAKVDAAGWLHVTPLNLAVERGHGSTAELLLSWGASPTQRTQW
                     GEVAQDLGPAVSTACRGEQEVPHGPQACRARAGPEAASSHGLQGVQAPLCWSEAACQG
                     ARENTPEVPGEEGSSGWSPSKKRVADLELFQTPRATSAL"
     misc_feature    <1068..>1442
                     /gene="ANKRD65"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1152..1160,1164..1169,1179..1181,1188..1190,
                     1215..1217,1221..1223,1227..1229,1239..1244,1251..1259,
                     1263..1268,1278..1280,1287..1289,1314..1316,1320..1322,
                     1326..1328,1338..1343,1350..1358,1362..1367,1377..1379,
                     1386..1388)
                     /gene="ANKRD65"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1221..1316
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1320..1406
                     /gene="ANKRD65"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 ggctggctgt gaggcaggca tttctcagcc gaggatggga gatggagacc caggcggtaa
       61 atggcccgag taggagcccc ttgaggggag gctcagataa tagctctctc tgctctccca
      121 tggccctttc ctaagttggc atctgaccct gaggccctac cctggggtgt tgccagctgg
      181 cgccaccttg tctactgcgg cccagcgttc ggccctcttc ccccggcccc cccttcccca
      241 gatgggcaga aaggggccca tctgcctata ccctccctat cccagaccaa gccataaccc
      301 cttccatacg tggggaaagc catcccaggg gaggaggggt cttcaggggg gctgtgtgtt
      361 gggggaggct gggaggatgg ggactgtgga ctggttaaat ctgacaatat ctttatcttc
      421 tcttcctgga acccttctcc tcttcccacc ctgcccagct gtccaggccc tggcagctcc
      481 tggtacaagg ctgagaggcc tcaggggagg ggagagagcc ttccccttgg gtggcaaaca
      541 aaagcccttc ttttgctgtg gccagtggcg gggggagggg ggcttggcag gagaaggagc
      601 tcttcaggga ggggcacacg tgcctccagg gacctgcact ccccgaggac cccagacagt
      661 ccctcagccc cgcgcccgtg gacggctcag ctcaccctcg agtggcacag gaatcccagg
      721 cctctcaagc tcaccagcac ccctcagaca cgtagggatg ctggacgatg acagcgacat
      781 gcacagcttg ttcaagggac gcggttggag acacgccggc cgggacagct gctgaggccc
      841 cctgcaatgc acgccaagcc ctgctgccca gcacgtgtgc aactgaactg cttgcactgg
      901 cacacgcgtg tgaagatttc acgatggact ctagggtctc tgagccccgg gagcaggacc
      961 tgacagaggc aggggcagag caggaactac ggtggttgga gctgggctcc gaggaggccc
     1021 caggagctgg gacagagggg cccagcgccc cacaggcctg ggggcgcctg ctgcaggccg
     1081 tgtggaaggg tcacgtgggc ctggtgactc agctactgcg gcaaggggcc agtgtggagg
     1141 agagggctgc tgccggtgga catctgctcg ccgtccaact gctggccgcc tggggagcag
     1201 acgtggacgc tcgggacacg ttgggcctca cccccctgca ccacgctgcc cggggaggcc
     1261 acatggaggt cgccggccac ctcctggcca ggggcgcgaa ggtcgacgct gctggctggc
     1321 tccatgtgac ccccctaaat cttgccgtgg agcgcggcca tggctccacc gcagagcttt
     1381 tgctgagctg gggggccagc cccacccaga ggacacagtg gggggaggtg gcccaggatc
     1441 tggggcctgc cgtctccaca gcctgccgtg gagagcagga ggtgccccat gggccccagg
     1501 cctgcagggc cagagcagga ccagaggctg caagctccca cggccttcag ggcgtgcagg
     1561 ctcctctctg ctggtctgag gctgcctgcc agggtgcacg ggagaacacc ccagaggttc
     1621 ctggagaaga aggaagcagt ggctggagcc cgagcaagaa gcgtgtggct gacctggaac
     1681 tattccagac tcccagggcc acgtcagccc tgtagcttca gccctgtgca cgctctttgg
     1741 cggagagact gagtcgtggc cacagaactg accaaaaccc aatgggttcc tgtttgtgcg
     1801 tcccccatcg gggtgtcagc ctcggtgctc cccccgggca caccggcact cttactgtgt
     1861 ttccttagat tcggtatttg tctcttggca cccactcact aatgacaggg ccagttgtcc
     1921 tcctctcccc tgctgtcccg acccatgccc tgaacggctg ccttctctca cgtgcccagc
     1981 tgacatcccc ctgcccgaag tcacccaggg ccaggcctgc ctctgtgcac caaggcccac
     2041 tggattatca aacaaaccaa tcagaagctg tttccctgcc ctgccttgcc tttcctgtgg
     2101 gaaccccaat aaaggcctga gccttccccg ggcccctgct cttaccaccc gatcgacact
     2161 gctgtttctg cctgtgtccc tgtggggcgt ggtgtgccct cccctcagga aatgtaaggc
     2221 ataaaaatct gctttcagga gcttccctca tggtgcagtg gttaggaatc tgcctgccga
     2281 tgcaggggac acagctttga gccctggtcc gggaagatcc cacatgccac ggagcaacta
     2341 agctcgtgtg ccacaactac tgag
//
LOCUS       XM_032610750            1549 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 65 (ANKRD65),
            transcript variant X5, mRNA.
ACCESSION   XM_032610750
VERSION     XM_032610750.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1549
                     /gene="ANKRD65"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742872"
     CDS             768..1403
                     /gene="ANKRD65"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 65
                     isoform X3"
                     /protein_id="XP_032466641.1"
                     /db_xref="GeneID:116742872"
                     /translation="MTATCTACSRDAVGDTPAGTAAEAPCNARQALLPSTCATELLAL
                     AHACEDFTMDSRVSEPREQDLTEAGAEQELRWLELGSEEAPGAGTEGPSAPQAWGRLL
                     QAVWKGHVGLVTQLLRQGASVEERTWRCYLSMGPTQASRTGTAALHSTGLLPVDICSP
                     SNCWPPGEQTWTLGTRWASPPCTTLPGEATWRSPATSWPGARRSTLLAGSM"
ORIGIN      
        1 ggctggctgt gaggcaggca tttctcagcc gaggatggga gatggagacc caggcggtaa
       61 atggcccgag taggagcccc ttgaggggag gctcagataa tagctctctc tgctctccca
      121 tggccctttc ctaagttggc atctgaccct gaggccctac cctggggtgt tgccagctgg
      181 cgccaccttg tctactgcgg cccagcgttc ggccctcttc ccccggcccc cccttcccca
      241 gatgggcaga aaggggccca tctgcctata ccctccctat cccagaccaa gccataaccc
      301 cttccatacg tggggaaagc catcccaggg gaggaggggt cttcaggggg gctgtgtgtt
      361 gggggaggct gggaggatgg ggactgtgga ctggttaaat ctgacaatat ctttatcttc
      421 tcttcctgga acccttctcc tcttcccacc ctgcccagct gtccaggccc tggcagctcc
      481 tggtacaagg ctgagaggcc tcaggggagg ggagagagcc ttccccttgg gtggcaaaca
      541 aaagcccttc ttttgctgtg gccagtggcg gggggagggg ggcttggcag gagaaggagc
      601 tcttcaggga ggggcacacg tgcctccagg gacctgcact ccccgaggac cccagacagt
      661 ccctcagccc cgcgcccgtg gacggctcag ctcaccctcg agtggcacag gaatcccagg
      721 cctctcaagc tcaccagcac ccctcagaca cgtagggatg ctggacgatg acagcgacat
      781 gcacagcttg ttcaagggac gcggttggag acacgccggc cgggacagct gctgaggccc
      841 cctgcaatgc acgccaagcc ctgctgccca gcacgtgtgc aactgaactg cttgcactgg
      901 cacacgcgtg tgaagatttc acgatggact ctagggtctc tgagccccgg gagcaggacc
      961 tgacagaggc aggggcagag caggaactac ggtggttgga gctgggctcc gaggaggccc
     1021 caggagctgg gacagagggg cccagcgccc cacaggcctg ggggcgcctg ctgcaggccg
     1081 tgtggaaggg tcacgtgggc ctggtgactc agctactgcg gcaaggggcc agtgtggagg
     1141 agaggacatg gaggtgctac ttgagcatgg ggccgactca agcctcaagg acaggcacgg
     1201 ccgctctgca ctccacaggg ctgctgccgg tggacatctg ctcgccgtcc aactgctggc
     1261 cgcctgggga gcagacgtgg acgctcggga cacgttgggc ctcacccccc tgcaccacgc
     1321 tgcccgggga ggccacatgg aggtcgccgg ccacctcctg gccaggggcg cgaaggtcga
     1381 cgctgctggc tggctccatg tgacccccct aaatcttgcc gtggagcgcg gccatggctc
     1441 caccgcagag cttttgctga gctggggggc cagccccacc cagaggacac agtgggggga
     1501 ggtggcccag gatctggggc ctgccgtctc cacagcctgc cgtggagag
//
LOCUS       XM_032610760            1307 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 65 (ANKRD65),
            transcript variant X6, mRNA.
ACCESSION   XM_032610760
VERSION     XM_032610760.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1307
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1307
                     /gene="ANKRD65"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116742872"
     CDS             768..1163
                     /gene="ANKRD65"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 65
                     isoform X4"
                     /protein_id="XP_032466651.1"
                     /db_xref="GeneID:116742872"
                     /translation="MTATCTACSRDAVGDTPAGTAAEAPCNARQALLPSTCATELLAL
                     AHACEDFTMDSRVSEPREQDLTEAGAEQELRWLELGSEEAPGAGTEGPSAPQAWGRLL
                     QAVWKGHVGLVTQLLRQGASVEESAGPGP"
     misc_feature    <846..>989
                     /gene="ANKRD65"
                     /note="MRVI1 protein; Region: MRVI1; pfam05781"
                     /db_xref="CDD:461738"
ORIGIN      
        1 ggctggctgt gaggcaggca tttctcagcc gaggatggga gatggagacc caggcggtaa
       61 atggcccgag taggagcccc ttgaggggag gctcagataa tagctctctc tgctctccca
      121 tggccctttc ctaagttggc atctgaccct gaggccctac cctggggtgt tgccagctgg
      181 cgccaccttg tctactgcgg cccagcgttc ggccctcttc ccccggcccc cccttcccca
      241 gatgggcaga aaggggccca tctgcctata ccctccctat cccagaccaa gccataaccc
      301 cttccatacg tggggaaagc catcccaggg gaggaggggt cttcaggggg gctgtgtgtt
      361 gggggaggct gggaggatgg ggactgtgga ctggttaaat ctgacaatat ctttatcttc
      421 tcttcctgga acccttctcc tcttcccacc ctgcccagct gtccaggccc tggcagctcc
      481 tggtacaagg ctgagaggcc tcaggggagg ggagagagcc ttccccttgg gtggcaaaca
      541 aaagcccttc ttttgctgtg gccagtggcg gggggagggg ggcttggcag gagaaggagc
      601 tcttcaggga ggggcacacg tgcctccagg gacctgcact ccccgaggac cccagacagt
      661 ccctcagccc cgcgcccgtg gacggctcag ctcaccctcg agtggcacag gaatcccagg
      721 cctctcaagc tcaccagcac ccctcagaca cgtagggatg ctggacgatg acagcgacat
      781 gcacagcttg ttcaagggac gcggttggag acacgccggc cgggacagct gctgaggccc
      841 cctgcaatgc acgccaagcc ctgctgccca gcacgtgtgc aactgaactg cttgcactgg
      901 cacacgcgtg tgaagatttc acgatggact ctagggtctc tgagccccgg gagcaggacc
      961 tgacagaggc aggggcagag caggaactac ggtggttgga gctgggctcc gaggaggccc
     1021 caggagctgg gacagagggg cccagcgccc cacaggcctg ggggcgcctg ctgcaggccg
     1081 tgtggaaggg tcacgtgggc ctggtgactc agctactgcg gcaaggggcc agtgtggagg
     1141 agagcgcggg gcccgggccg tagctgcaga ccgcgcgggg cgcacgccgc tgcacgaggc
     1201 cgcctggcac gggccctcgc gggcggccga gctgctccta cagcgcgggg cgtcagcgaa
     1261 cgtgcgctgt ggggccggcc tcacgccact gcactgggcc gccgcgc
//
LOCUS       XM_032610774            2081 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus von Willebrand factor A domain containing
            1 (VWA1), mRNA.
ACCESSION   XM_032610774
VERSION     XM_032610774.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 4 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-637               VOSU01000011.1     554053-554689
            638-760             VOSU01000011.1     555324-555446
            761-1134            VOSU01000011.1     556560-556933
            1135-1176           VOSU01000011.1     556935-556976
            1177-1233           VOSU01000011.1     556979-557035
            1234-1287           VOSU01000011.1     557038-557091
            1288-1288           "N"                1-1
            1289-1321           VOSU01000011.1     557092-557124
            1322-1600           VOSU01000011.1     558799-559077
            1601-2081           VOSU01000011.1     559186-559666
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2081
                     /gene="VWA1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 5 bases in 3 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 90% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116742897"
     CDS             388..1938
                     /gene="VWA1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 5 bases in 3 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: von Willebrand factor A
                     domain-containing protein 1"
                     /protein_id="XP_032466665.1"
                     /db_xref="GeneID:116742897"
                     /translation="MSPAANHLCSGLARIPDARLLVTVEGFPSGLPGGFCPQSWSLAS
                     ALGPSLGRAYGDSGMPSTITLDRPEPAILGSYASSSKKPAQERAGHERRQSVAVPSRA
                     MLPWTVLGLALSLRLARSGAERGPPASAPQGDLLFLLDSSASVSHYEFSRVREFLGRL
                     AALLPLGPGALRASLVHVGSRPHTEFPFGQHSSGSAIQDAIHAAAQRMGDTNHWPALA
                     YAKEQLFAKAAGARPGVPKVLVWVTDGGSSDPVGPPMQELKDLGVPVFVVSTGRGNLL
                     ELSAAASAPTEKHLHFVDVDDPAHXSTQALRGSILDAMWPHQLRASEVTSSGFRLAWP
                     PLLTADSGYYLLELAPSAKPGTARRQQLPGNATGWAWAGLDPDTDYDVALVPESNVRL
                     LRPQHLRVRTLPEETGPERIVISHARPRSLRVSWAPALGPAAALGYHVQVGPLRGGAA
                     QLMEVPAGRNSTTLQGLAPGTAYLVTVTAAFRSGRERALSAKACTPDGERSRAPRPQS
                     PGAGGREP"
     misc_feature    787..1269
                     /gene="VWA1"
                     /note="von Willebrand factor type A domain; Region: VWA;
                     pfam00092"
                     /db_xref="CDD:459670"
     misc_feature    1333..1533
                     /gene="VWA1"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1612..1842
                     /gene="VWA1"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
ORIGIN      
        1 tcctcaggct cagctgagct gcttccttta tttaggcaaa agtcaggagc tccagtctgt
       61 ctcccagcct ggcgtctcac ctgccagaga ggaggaagga aaaccattga gtcccatccg
      121 tcctccctgc tgggcatcct cctggggagg gaggaaaggg aggggacatc ctggcagaga
      181 tggccctgcc tcctccctgt gggggacctg tgccccccac ccagctgcac agagaggagt
      241 gggagagggc ggcggtgacc ccacaggaaa ggcatcttag gagggagggg ggcaggctct
      301 cttggacctc actcctgccc acgggacact gccccatctc acctaagggc aaggaatctg
      361 ccctgggggc actgagtgtc cctcaggatg tcccctgcag ccaaccacct ctgctctggt
      421 ctagccagga tcccagatgc gcggctcctg gtcacagtgg agggtttccc cagtgggctg
      481 cctggggggt tctgtcctca gtcctggagt ttggcctcag ccctgggccc ctcactgggc
      541 agggcctatg gggacagcgg tatgcccagc acgatcacac tggacaggcc tgaaccagcc
      601 atcctcggct cctatgcctc ttcctctaag aagccagctc aggagcgagc gggccacgag
      661 cggaggcaga gcgtggccgt cccgtcgcgc gcgatgctgc cctggacggt gctcggcctg
      721 gccctgagcc tgcggctggc gcggagcggc gcggagcgtg gccccccggc atctgccccc
      781 cagggggacc tgctgtttct gttggacagc tcggccagcg tgtctcatta tgagttttcc
      841 cgagttcggg agtttttggg gcggctggcg gccctgctgc ccctgggccc tggggccctg
      901 cgtgccagcc tggtgcacgt gggcagtcgg ccgcacaccg agttcccctt cggccagcac
      961 agctcaggct cggccatcca ggacgccata cacgctgcag cccagcgcat gggtgacacc
     1021 aaccactggc ctgcgctggc atatgccaag gagcagctgt ttgccaaggc ggcgggggcc
     1081 cggccggggg tgcccaaggt gctggtgtgg gtgacagacg gcggctccag cgaccccgtg
     1141 gggcccccca tgcaggagct gaaggacctg ggcgtcccag tcttcgtcgt cagcactggc
     1201 cgcggcaacc tcctggagct gtcggccgcc gcctcggccc ccactgagaa gcatctgcac
     1261 ttcgtggatg tggatgaccc tgcacatnca tcaacccagg cgctgagggg ctccattctc
     1321 gacgcgatgt ggccgcatca gctccgtgcc tccgaggtta cgtccagcgg cttccgtctg
     1381 gcctggccgc ccctactgac cgccgactcg ggctactacc tgttggagct ggcgcccagc
     1441 gccaagccgg gaacggcgcg ccgccagcag ctgccaggga acgccacggg ctgggcctgg
     1501 gccggcctgg accccgacac ggactacgac gtggcgctgg tgccggagtc caacgtgcgg
     1561 ctcctgaggc cacagcacct gcgggtgcgc actctgccgg aggagaccgg gccggagcgc
     1621 atcgtcatct cgcacgccag gccgcgcagc ctgcgcgtga gctgggcccc ggcgctgggc
     1681 ccggccgccg cgctcggcta ccacgtgcag gtcgggcccc tgcggggcgg cgcggcgcag
     1741 ctcatggagg tgcccgcggg ccggaacagc accacgctgc agggcctggc gccgggcacc
     1801 gcctacctgg tgaccgtgac ggcggccttc cgctccggcc gcgagagggc gctgtcggcc
     1861 aaggcctgca cgcccgacgg cgagcgcagc cgcgccccgc gcccccagtc gccgggcgct
     1921 gggggccggg agccgtgagc aggccgcgcc cgcgcacccg agggcgccct tctcccgagc
     1981 tcggtgggtc ttgccccagg ggtgggatgc tggccggcct ttggcccgcg ggacccccgc
     2041 gcaagagggc gccctgctcc ggcgtcggcc ctccaggacg c
//
LOCUS       XM_032610787            1418 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 240 (TMEM240),
            transcript variant X1, mRNA.
ACCESSION   XM_032610787
VERSION     XM_032610787.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1418
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1418
                     /gene="TMEM240"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116742901"
     CDS             201..920
                     /gene="TMEM240"
                     /codon_start=1
                     /product="transmembrane protein 240 isoform X1"
                     /protein_id="XP_032466678.1"
                     /db_xref="GeneID:116742901"
                     /translation="MSMSANTMIFMILGASIVMVSGGASRAPAPRTRSRLRARAPPPP
                     PAPCLPARAACAPPSPARRPPPGGAGPASRSSALTGHGLFQAIACLMDMNALLDRFHN
                     YILPHLRGEDRVCHCNCGRHHVHYVIPYDGDQSVVDASENYFVTDNVTKQEIDLMLGL
                     LLGFCISWFLVWMDGVLHCAVRAWRAGRRYDGSWTWLPKLCSLRELGRRPHRPFEEAA
                     GNMVHVKQKLYHNGHPSPRHL"
     misc_feature    201..917
                     /gene="TMEM240"
                     /note="TMEM240 family; Region: TMEM240; pfam15207"
                     /db_xref="CDD:405814"
ORIGIN      
        1 gcgcgcgggc cgggcggccg aggaccccgg gagcgccgcg tcccctgccc cgcgccggcc
       61 ccgcgcctcc tccccggccg acggcggtgg gtgcgcggcg ggctgacctc tgcagaggcg
      121 gcgggggctc agcatcgggc cggggccggg ggggcgccgg ggccgggggg cggcgctccg
      181 gcccggcccg gccccgcccg atgtccatga gcgccaacac catgatcttc atgattctgg
      241 gggcgtcgat cgtgatggtg agcggagggg cttcccgcgc gcccgctccc cgcacccgct
      301 cccgcctccg cgcccgcgcg ccgcctcccc ctcccgcgcc ttgtttaccg gcccgggcgg
      361 cctgcgctcc cccatcccca gcgcgtcggc ccccgccggg gggcgccggc ccagcctctc
      421 gctcctcggc gctgaccggt catgggctct tccaggccat cgcgtgcttg atggacatga
      481 acgcgctgct ggaccgattc cacaactaca tcctcccgca cctgcggggc gaggaccgcg
      541 tctgccactg caactgtggc cggcaccacg tccactacgt gatcccgtac gacggggacc
      601 agtctgtggt ggacgcctcc gagaactact tcgtgacaga caacgtcacc aagcaggaga
      661 tcgacctcat gctggggctg ctgctcggct tctgcatcag ctggttcctg gtgtggatgg
      721 acggcgtcct gcactgcgcc gtgcgtgcct ggagggccgg ccggcgctac gacggctcgt
      781 ggacctggct gcccaagctg tgcagcctgc gggagctggg ccggcggcca cacaggccgt
      841 tcgaggaggc ggccgggaac atggtgcatg tgaagcagaa actctaccac aacggtcacc
      901 cgagcccgcg gcacctctga gccgcgcgca ggactcgcgg ggccgccggc caccgcgccc
      961 acgctcacgg gactggacgg ccggcccggg ccagggcgcc cgcggccgtc gggcgcgtcc
     1021 ggcggaaggt gctgtctcct cttcttttta taaagggggt cggggtgggg ccggggcggg
     1081 ggcgcgggga cagcggcacc gggggcgcgg gtgggaccgc ccgcccagcc caggaccacg
     1141 tccgccgctg gaaaccggcg gcttcctgtg cgcccgcgtc tgtctctccg tccgtccgtc
     1201 tggtttccgg agccggagcc ggttctgccg gaggcgagca cggccgggag ccgggtgcgc
     1261 ccacgtctgc acacgggagc acgtgcatga ggcgtgtgcg cccgcggccc gcagtggggg
     1321 cgcgggcagg ggtccggggg aggcccgggc ccagcgggcg gcagcccagc tcgggcgcct
     1381 cactgtgact cccacccgtg ctggtcagta aattctct
//
LOCUS       XM_032610797            1220 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 240 (TMEM240),
            transcript variant X2, mRNA.
ACCESSION   XM_032610797
VERSION     XM_032610797.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1220
                     /gene="TMEM240"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742901"
     CDS             201..722
                     /gene="TMEM240"
                     /codon_start=1
                     /product="transmembrane protein 240 isoform X2"
                     /protein_id="XP_032466688.1"
                     /db_xref="GeneID:116742901"
                     /translation="MSMSANTMIFMILGASIVMAIACLMDMNALLDRFHNYILPHLRG
                     EDRVCHCNCGRHHVHYVIPYDGDQSVVDASENYFVTDNVTKQEIDLMLGLLLGFCISW
                     FLVWMDGVLHCAVRAWRAGRRYDGSWTWLPKLCSLRELGRRPHRPFEEAAGNMVHVKQ
                     KLYHNGHPSPRHL"
     misc_feature    201..719
                     /gene="TMEM240"
                     /note="TMEM240 family; Region: TMEM240; pfam15207"
                     /db_xref="CDD:405814"
ORIGIN      
        1 gcgcgcgggc cgggcggccg aggaccccgg gagcgccgcg tcccctgccc cgcgccggcc
       61 ccgcgcctcc tccccggccg acggcggtgg gtgcgcggcg ggctgacctc tgcagaggcg
      121 gcgggggctc agcatcgggc cggggccggg ggggcgccgg ggccgggggg cggcgctccg
      181 gcccggcccg gccccgcccg atgtccatga gcgccaacac catgatcttc atgattctgg
      241 gggcgtcgat cgtgatggcc atcgcgtgct tgatggacat gaacgcgctg ctggaccgat
      301 tccacaacta catcctcccg cacctgcggg gcgaggaccg cgtctgccac tgcaactgtg
      361 gccggcacca cgtccactac gtgatcccgt acgacgggga ccagtctgtg gtggacgcct
      421 ccgagaacta cttcgtgaca gacaacgtca ccaagcagga gatcgacctc atgctggggc
      481 tgctgctcgg cttctgcatc agctggttcc tggtgtggat ggacggcgtc ctgcactgcg
      541 ccgtgcgtgc ctggagggcc ggccggcgct acgacggctc gtggacctgg ctgcccaagc
      601 tgtgcagcct gcgggagctg ggccggcggc cacacaggcc gttcgaggag gcggccggga
      661 acatggtgca tgtgaagcag aaactctacc acaacggtca cccgagcccg cggcacctct
      721 gagccgcgcg caggactcgc ggggccgccg gccaccgcgc ccacgctcac gggactggac
      781 ggccggcccg ggccagggcg cccgcggccg tcgggcgcgt ccggcggaag gtgctgtctc
      841 ctcttctttt tataaagggg gtcggggtgg ggccggggcg ggggcgcggg gacagcggca
      901 ccgggggcgc gggtgggacc gcccgcccag cccaggacca cgtccgccgc tggaaaccgg
      961 cggcttcctg tgcgcccgcg tctgtctctc cgtccgtccg tctggtttcc ggagccggag
     1021 ccggttctgc cggaggcgag cacggccggg agccgggtgc gcccacgtct gcacacggga
     1081 gcacgtgcat gaggcgtgtg cgcccgcggc ccgcagtggg ggcgcgggca ggggtccggg
     1141 ggaggcccgg gcccagcggg cggcagccca gctcgggcgc ctcactgtga ctcccacccg
     1201 tgctggtcag taaattctct
//
LOCUS       XM_032610813            1265 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSU72 homolog, RNA polymerase II CTD
            phosphatase (SSU72), transcript variant X1, mRNA.
ACCESSION   XM_032610813
VERSION     XM_032610813.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1265
                     /gene="SSU72"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742907"
     CDS             209..892
                     /gene="SSU72"
                     /codon_start=1
                     /product="RNA polymerase II subunit A C-terminal domain
                     phosphatase SSU72 isoform X1"
                     /protein_id="XP_032466704.1"
                     /db_xref="GeneID:116742907"
                     /translation="MTSGRRGRHLARAEAARLGGSPEAGVADRAATAMPSSPLRVAVV
                     CSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLL
                     RKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSRE
                     QETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR
                     TFLHTVCFY"
     misc_feature    323..889
                     /gene="SSU72"
                     /note="Ssu72-like protein; Region: Ssu72; pfam04722"
                     /db_xref="CDD:461410"
ORIGIN      
        1 aggaggcttc cgtgccaagc gccggcctcg gcgctcgcgc ccgaaggagc ggcgcgctcg
       61 ctggccggtg tggcgcccgg ggagctgggc ctcccacggt ccgcagtcca gctctctggg
      121 ccggcgctgg gaagccgctg ggacgccgta cacacgccag cgccgcgcct cctgacgcgc
      181 tacgtcgccg gcgccgccgc ttcgcgtaat gacttccggg cgccggggcc gccatcttgc
      241 tcgcgcggaa gcggcgcggc tgggtgggag tcctgaagcg ggagtcgcgg accgtgcggc
      301 caccgccatg ccgtcatcgc cgttgcgggt ggcggtggtg tgctcgagca accagaaccg
      361 gagcatggag gcgcacaaca tcctcagcaa acgaggattc agcgtccggt ccttcggaac
      421 aggaactcac gtgaagcttc caggaccagc acccgacaag ccaaacgttt atgatttcaa
      481 aaccacatat gaccagatgt acaacgatct ccttaggaaa gacaaagaac tctacacgca
      541 gaatggcatt ttacacatgc tggacagaaa taagaggatc aagccccggc cagaaaggtt
      601 ccagaactgc aaagatctgt ttgatctgat cctcacctgt gaagagcggg tgtacgacca
      661 ggtggtggaa gatctgaatt ctagggagca ggagacgtgc cagcctgtgc atgtgatcaa
      721 cgtggacatc caggacaacc acgaggaggc caccctgggg gcgttcctca tctgtgagct
      781 ctgccagtgc atccagcaca cggaggacat ggagaacgag attgacgagc tgctgcagga
      841 gtttgaggag aagagcggca ggaccttcct gcacaccgtc tgcttctact gatggccccg
      901 cccgcctgga gccaccttgc tgagcttcct tttgttaata cttcttcctt cctgatattt
      961 gtttttacct ttaggtattc tgccgatgga cggacggtgg cagtgcccaa ataaactgta
     1021 catatgaaat gagaagataa acataaatgc cagattacaa tcaagttttt cccatcccac
     1081 ttttacttac gagtgggata ttgattatag ttttttttct ttaaccaaaa aagaaaaaaa
     1141 cggttgatag cacatttccc cccagccgtc tgcctctcac tgagcacccc tttcccgtct
     1201 cccctaactg gccgcaatgt acaaatccct gaataaagca acaggctgta ctttttggga
     1261 aagaa
//
LOCUS       XM_032610821            1118 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SSU72 homolog, RNA polymerase II CTD
            phosphatase (SSU72), transcript variant X2, mRNA.
ACCESSION   XM_032610821
VERSION     XM_032610821.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1118
                     /gene="SSU72"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 3
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742907"
     CDS             246..893
                     /gene="SSU72"
                     /codon_start=1
                     /product="RNA polymerase II subunit A C-terminal domain
                     phosphatase SSU72 isoform X2"
                     /protein_id="XP_032466712.1"
                     /db_xref="GeneID:116742907"
                     /translation="MTSGRRGRHLARAEAARLGGSPEAGVADRAATAMPSSPLRVAVV
                     CSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLL
                     RKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSRE
                     QETCQPVHVINVDIQDNHEEATLGAFLICELCQCVFCRWTDGGSAQINCTYEMRR"
     misc_feature    360..830
                     /gene="SSU72"
                     /note="Ssu72-like protein; Region: Ssu72; pfam04722"
                     /db_xref="CDD:461410"
ORIGIN      
        1 gggggcttgt gacgtcagga cgccaacgca gggcgccagg aggcttccgt gccaagcgcc
       61 ggcctcggcg ctcgcgcccg aaggagcggc gcgctcgctg gccggtgtgg cgcccgggga
      121 gctgggcctc ccacggtccg cagtccagct ctctgggccg gcgctgggaa gccgctggga
      181 cgccgtacac acgccagcgc cgcgcctcct gacgcgctac gtcgccggcg ccgccgcttc
      241 gcgtaatgac ttccgggcgc cggggccgcc atcttgctcg cgcggaagcg gcgcggctgg
      301 gtgggagtcc tgaagcggga gtcgcggacc gtgcggccac cgccatgccg tcatcgccgt
      361 tgcgggtggc ggtggtgtgc tcgagcaacc agaaccggag catggaggcg cacaacatcc
      421 tcagcaaacg aggattcagc gtccggtcct tcggaacagg aactcacgtg aagcttccag
      481 gaccagcacc cgacaagcca aacgtttatg atttcaaaac cacatatgac cagatgtaca
      541 acgatctcct taggaaagac aaagaactct acacgcagaa tggcatttta cacatgctgg
      601 acagaaataa gaggatcaag ccccggccag aaaggttcca gaactgcaaa gatctgtttg
      661 atctgatcct cacctgtgaa gagcgggtgt acgaccaggt ggtggaagat ctgaattcta
      721 gggagcagga gacgtgccag cctgtgcatg tgatcaacgt ggacatccag gacaaccacg
      781 aggaggccac cctgggggcg ttcctcatct gtgagctctg ccagtgcgta ttctgccgat
      841 ggacggacgg tggcagtgcc caaataaact gtacatatga aatgagaaga taaacataaa
      901 tgccagatta caatcaagtt tttcccatcc cacttttact tacgagtggg atattgatta
      961 tagttttttt tctttaacca aaaaagaaaa aaacggttga tagcacattt ccccccagcc
     1021 gtctgcctct cactgagcac ccctttcccg tctcccctaa ctggccgcaa tgtacaaatc
     1081 cctgaataaa gcaacaggct gtactttttg ggaaagaa
//
LOCUS       XM_032610835            3332 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 88B (TMEM88B),
            mRNA.
ACCESSION   XM_032610835
VERSION     XM_032610835.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3332
                     /gene="TMEM88B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116742912"
     CDS             986..1474
                     /gene="TMEM88B"
                     /codon_start=1
                     /product="transmembrane protein 88B"
                     /protein_id="XP_032466726.1"
                     /db_xref="GeneID:116742912"
                     /translation="MSEQERETEEDEGGGASDTAPMLPRRLPDRQASDLMSPGWAGLA
                     AQGLGVLLLLGRALAGLVLHLLLPAAVFLLLLLPAATTVYLGFLCHSRVHPAPRPACR
                     ALLSDRGSAALIVLGFLSLPPLLVLASAARSRLARRLRSLLPPPTWSPGPCRHPDGEE
                     QL"
ORIGIN      
        1 gtgaactctt agttgtggca tgcacgcagg agctagttcc ctgaccaggg atcaaaacca
       61 ggccccctgc attgggagca cagaggctta cccactggac caccagggaa gtccctgtaa
      121 gtggtgttta aaacactgta tgtcgtgcac ggaaaccccg ggcggctgtt aggtgctaag
      181 agtattttgg taatatttgg agaaattagt tggggttttc ggaggggctg ggaatgcctc
      241 ctccccgctt acttgaaatc acagaataca cgctcccccc gttttcagga tgggttggat
      301 tctgacacca aggatacctg taatggcagc tgccattatc gagcacctac tgtgtgctga
      361 gttccacatt aagcatttca catacgttac ccatgtaccc tctcaacagc cctgcagtgt
      421 gggcacccag catcttctgg ggctgttctg atgctgatag gggccaggtt tggggatgag
      481 ggaaccagag ggggcgaggt cagatgttga ccttcccgtg gcagctacgg atggggcagt
      541 tgccagagtt gagactgatg aaatgaaacc attgtgtgca gggtctggaa gtggggagag
      601 ggcgggacct ggggtgagga cagcccagtg ctgagctctc aggacagctg tgcagggctc
      661 cgaccagagc acgcaggggc tggcggggga gactgggcag ggctggagct gtagtaacct
      721 ggcagagaga gggtcagcct ggcagcgagg acctgaggct caggtgtgac cctggagact
      781 gatggtcagg gctggaccta actggaccag ggccctgccc tccagctgag tccactatct
      841 ggttgctggg gtctgggtgg aggtctgacc tggcaacctg gggttaaaag gttgctaatc
      901 cgacctgggc ggggggcgga ggatgggcat cagtccagcc acgtgaccac cactgtgcgc
      961 ccaccaggcc cactgccaag agagcatgag tgagcaggag agggagacag aggaggatga
     1021 gggaggaggt gcttcagaca cagcacccat gctgccccga aggcttcctg accgccaggc
     1081 ctcagacctg atgtccccag ggtgggcagg cctggctgcc caaggcctgg gggtcctgct
     1141 gctgctgggt cgggccctgg ctgggctcgt gctccatctg ctgctgcccg cagccgtgtt
     1201 cctgctgctg ctgctgcccg cagccaccac tgtgtacctg ggattcctgt gccactcgag
     1261 ggtccacccg gcgccccgcc ctgcgtgccg cgcgctgctg tccgaccgcg gctccgcggc
     1321 gctcatcgtg ttgggattcc tctcgctgcc tccgctgctg gtgctcgcct cggccgcccg
     1381 ctcccgcctg gcccgacgcc tccgctcgct gctgccaccc ccgacctgga gtcccggacc
     1441 ctgccgccac cccgacgggg aggagcagct ctaagcctgg gtgtgacccc agaggcctct
     1501 ccaaatcccg gaggcccccg aactcccccc gtgtccccca tcggtggctc caggctggtg
     1561 agctcagggt ctgcgtccag gtcccggccg ggaaatcccg tgcgtgccgc gcggccccgt
     1621 gcgcagtgct ccgaggggcc gcgaggtggc accggactcc cccggaccgg gacggccctt
     1681 ccccaccgtt accggcttcc gcagtccccg cagccgccga ggggctggga cgcccccaga
     1741 gaacagggag atggctctcg gagaaggggc gcgtggccag gctcggagag aggcggcctt
     1801 cctggcttct gccactgtgg ctgtcctggg ctcctgtgcc ccgacaacgg gcagtccctg
     1861 cgggccccct gtctggtccg gcagcggcct ccagcgagtg ccagaggtgg ggagacttcc
     1921 acgctccacg gttccagaac ttcagcggcc agagcactag ggcatgcagg gctcagcccg
     1981 agaccggggt cagcgtttag agtgagggct ctgtctgttc tctctggata attttaagat
     2041 cttttccgtc ttttgctttc tgtgctttta agcatgtttg tggttgtggc tatgttctta
     2101 tttatcccct tggtacacac ggtgtgtccc gtttctacag attcacatct tttggcagtt
     2161 ctggagaatt ctcaaccatt atttcttcaa ttctgtctca ttcattctac acattctttc
     2221 ctgggaaaca cctattatgt gaatgcttcc cactgtgctt tcaccactcg tgtcagttca
     2281 actctcttct gtgttttcca tctccttgtc tcccagtgct gcgttcttgg cagtttcctc
     2341 atctccctct ttgagttcac taagcactag ctgagtctaa tctgctgatt atcacatcca
     2401 tttaacttaa attatgatgt cgccctatct aaaagttata ctactcactt cttattcaaa
     2461 tctgatgatt ttgatgatct cttggtgcat atgctcgtga tttgggttcc agcttcgact
     2521 tctggaacat ttcacacgta gttgtttctt ttttttcttt taattattta ttttttggca
     2581 gtgccctgcg gcatgcgaca tcttagctcc ccaaccaggg atcaaaccct caccccctgc
     2641 actgggagcg tggagtctta accgctggac cgccagggaa gccgcacaca tagttatttt
     2701 acagactgtg cctaacaact gcactccctt tgcctttggg ggcctaaatc tgttatttgt
     2761 tgcttctgct gactcagtaa cagcatgtcg tttctttgaa cgtttgtact tgttaagcat
     2821 cagcccccac ctgtgaacat tctgaggcca cgtccctcca cagaggatgc ccttgtgagc
     2881 cgtgaccaac ctgggccccc gttagggtcc tggttagtac cccgctgtgc agggcacccc
     2941 cactgtggcc ctgatgcact gtggctccat ccctgtgttc aggggattct ctgctttccc
     3001 atttgtttcc gttcatcatc ctgggtttct gttccctatt cttctgttta tttatgcact
     3061 tctttctagc gtttcctgag gggagggggc ttggaagata tctactgcct tgtaagccca
     3121 gcagtgtatt aaaaatgtgt ttgttgtggg cttccctggt ggcgcagtgg ttgagagtct
     3181 gcctgccgat gcaggggaca tgggttcgtg ccccggtccg ggaagatccc acatgccgtg
     3241 gagtggctgg gcccctgagc catggccatt gagcctgcgc gtccggagcc tgtgctctgc
     3301 aacgggagag gccacaacag tgagaggccc gc
//
LOCUS       XM_032610843            2390 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X1, mRNA.
ACCESSION   XM_032610843
VERSION     XM_032610843.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2390
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             92..1363
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X1"
                     /protein_id="XP_032466734.1"
                     /db_xref="GeneID:116742916"
                     /translation="MQNRPEMGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKL
                     TSELLGEGAYAKVQGAVSLQNGKEYAVKVSVSSGCQALLCRSLKNMQDTVGVGYFGRW
                     RRCISVKETSSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLKPENILC
                     ESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVFTDKATF
                     YDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQEGKYEF
                     PDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGQAPERGLPTPQVLQRNS
                     STMDLTLFAAEAIALNRQLSQHEENELAKESEALAEGLCSVRLSPPSKSRLARRRALT
                     QAGRSGDTQLNPTPTALCPTPGPRPGPTGNL"
     misc_feature    209..1039
                     /gene="MKNK1"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(236..247,254..256,260..262,299..301,305..307,
                     362..364,416..424,545..547,557..562,566..568,605..610)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 tttcaaaaac aactctcctt caacaagttc tgtttccaag gaaagtctta accatttgtc
       61 ccttctggcg caccctcttc cattgaaatc catgcagaat agaccagaga tgggcagcag
      121 tgaacctgtt cccattgcag aaagtgacaa gaggaagaag aagaagcgga aggcccgggc
      181 cactgactcc ttgccaggaa agtttgaaga tacgtacaaa ctgacctctg agctgcttgg
      241 agagggagcc tatgccaaag ttcaaggtgc cgtgagcctg cagaatggca aggagtatgc
      301 tgtcaaagtg agtgtctcat ctggatgcca ggctttactt tgcagatcat tgaaaaacat
      361 gcaggacaca gtcggagtag ggtatttcgg gaggtggaga cgctgtatca gtgtcaagga
      421 aacaagctcc atcctgaccc acatccagaa gcagaagcaa ttcaacgagc gagaagccag
      481 ccgagtggtg caggatgttg ccgcagccct tgacttcctg cacaccaaag gcattgctca
      541 ccgcgatctg aagccagaaa atatattgtg tgaatctcca gaaaaggtgt ctccggtgaa
      601 aatctgtgac tttgacttgg gcagtggggt gaaactgaac aactcctgca cccccataac
      661 cacaccagag ctgaccactc catgtggctc tgcagaatat atggcccctg aggtggtaga
      721 agtcttcacg gataaggcca ctttttacga caagcgctgt gacctgtgga gcctgggtgt
      781 ggtcctctac atcatgctga gtggctaccc gccctttgtg ggtcactgcg gagccgactg
      841 tggctgggac cggggagagg tctgcacagt gtgccagaac aagctgtttg agagcatcca
      901 ggaaggcaag tatgagtttc ctgacaagga ctgggctcat atctccaacg aggccaaaga
      961 cctcatctcc aagctcctgg ttcgagacgt gaaacagaga ctgagtgccg cccaagttct
     1021 gcagcacccg tgggtgcagg ggcaagctcc agaaagggga ctccccacgc cgcaagtcct
     1081 ccagagaaat agcagcacaa tggacctgac gctctttgcg gccgaggcca tcgcccttaa
     1141 ccgccagctg tctcagcatg aggagaatga actggcgaag gagtcagagg cgctggccga
     1201 gggcctctgc tccgtgaggc tttcccctcc ctccaagtca cgcctggccc gccggagggc
     1261 gctgacccag gcaggccgca gtggagacac gcaactgaac ccaacaccca cagcgctctg
     1321 tcccactccg ggccccaggc ccggccccac tggaaacctg tgaggggcct gctctgcagc
     1381 tccatccagg ccttttcatc cacaaaggct ctcatcctcc tttccccaga gtcctcaagg
     1441 aaaaagcttt ttcctaaggg gttgtctttg aaaggcaaac tatcacttgt cactttgcat
     1501 aattgcctgc ggcagggaca tctctttact gggctcctgc ccacctgctc acccgcctgc
     1561 ggatcgagga tccagcctgc tctcaccggc tggggctgcg gccttcaggg agccagcctt
     1621 gagaagcgtc agttgacaga ggctcttccc tctctctgca ctgtcacccc cctctggcgg
     1681 tccttccacc ttcctctgtc ctccggacgt cctccccctt ggctgaggga agccatcccc
     1741 tcgattcagg gaagggcagg gagccttctg cattcaggag gccagatccg tcttccagtc
     1801 gatagctcag agaagcacat aatctttctt tgccatgacc aaaatgtgtc cgtcatttat
     1861 catcctctac ctggtttggg attgctgctg aagtcagtat tatttcgtgt tttacaatat
     1921 ttggcatttt ttctaaccgt gctcttccga caaagatgag actttaaact cccactgtga
     1981 gcccatggac tttccagagc tcttagggtt cacttttctc tcctgaactt ccatgcattt
     2041 ggaaggtttt aatgagctat ttcctattac tctaactggt tttaagctgt tcagatgatg
     2101 agtgactcag agaccagtgt gtctgctgct accttcctcg agcctggtgt ggagggcagc
     2161 gcaggtccgg ggcactgagg agctctgtgc ctgatgtgga gccagtccgg aggctgccca
     2221 gccaccctgg tctgagccgt gtggtgcctt ctgctgggga gctgatagct gagcatcagt
     2281 ggagctgctt agttatctaa gaaaatcggt ttgcatatgt cacatgtttt gacaacacaa
     2341 ggatgctatt atgcattgtg cttattttaa taaaactgtt ttaaattcta
//
LOCUS       XM_032610852            2854 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X2, mRNA.
ACCESSION   XM_032610852
VERSION     XM_032610852.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2854
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 8 long SRA reads, 23
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             520..1827
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X2"
                     /protein_id="XP_032466743.1"
                     /db_xref="GeneID:116742916"
                     /translation="MQNRPEMGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKL
                     TSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNIL
                     ELIEFFEDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGI
                     AHRDLKPENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAP
                     EVVEVFTDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNK
                     LFESIQEGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGQAPER
                     GLPTPQVLQRNSSTMDLTLFAAEAIALNRQLSQHEENELAKESEALAEGLCSVRLSPP
                     SKSRLARRRALTQAGRSGDTQLNPTPTALCPTPGPRPGPTGNL"
     misc_feature    637..1503
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(664..678,688..690,727..729,733..735,823..825,
                     871..882,892..894,898..900,1006..1011,1015..1017,
                     1021..1026,1030..1032,1069..1074,1081..1083,1147..1161,
                     1165..1167)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(664..675,688..690,727..729,733..735,823..825,
                     871..882,892..894,1021..1026,1030..1032,1069..1074)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(676..678,892..894,898..900,1006..1011,1015..1017,
                     1021..1023,1081..1083,1147..1161,1165..1167)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    1069..1161
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1291..1293,1303..1305,1327..1329,1336..1338)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 ctacacgcca tcgggcccac ccctcggagc tagtatatct tcttccgtgt tcttggctga
       61 gcgagcaggt ggctggtgtg cgcgacaggc cttgccggga gtcagctgag gaaaatttga
      121 aatacagcca taccccattt tattgcactt cacaattatc gcgtctttta caatttgaag
      181 gtttgtgcca accccgcctt gtcagatgat ggttaacatt ttttagcaat atttttaaat
      241 taagattttc atgccgggta taatgaagca gaggccaatg gaaaactgaa gaatgtctgc
      301 tatgtacaga ggccattgaa acacttcctg caactggaag acagcagccc cctgacagga
      361 gcattattgc atttggaatt tcaaggttac agagagggtc tgcttcgcaa agttgggcag
      421 acctatagtt tcaaaaacaa ctctccttca acaagttctg tttccaagga aagtcttaac
      481 catttgtccc ttctggcgca ccctcttcca ttgaaatcca tgcagaatag accagagatg
      541 ggcagcagtg aacctgttcc cattgcagaa agtgacaaga ggaagaagaa gaagcggaag
      601 gcccgggcca ctgactcctt gccaggaaag tttgaagata cgtacaaact gacctctgag
      661 ctgcttggag agggagccta tgccaaagtt caaggtgccg tgagcctgca gaatggcaag
      721 gagtatgctg tcaaaatcat tgaaaaacat gcaggacaca gtcggagtag ggtatttcgg
      781 gaggtggaga cgctgtatca gtgtcaagga aacaagaaca ttttggagct gattgagttc
      841 tttgaagacg acacaaggtt ttacttggtc tttgagaaat tgcaaggagg ctccatcctg
      901 acccacatcc agaagcagaa gcaattcaac gagcgagaag ccagccgagt ggtgcaggat
      961 gttgccgcag cccttgactt cctgcacacc aaaggcattg ctcaccgcga tctgaagcca
     1021 gaaaatatat tgtgtgaatc tccagaaaag gtgtctccgg tgaaaatctg tgactttgac
     1081 ttgggcagtg gggtgaaact gaacaactcc tgcaccccca taaccacacc agagctgacc
     1141 actccatgtg gctctgcaga atatatggcc cctgaggtgg tagaagtctt cacggataag
     1201 gccacttttt acgacaagcg ctgtgacctg tggagcctgg gtgtggtcct ctacatcatg
     1261 ctgagtggct acccgccctt tgtgggtcac tgcggagccg actgtggctg ggaccgggga
     1321 gaggtctgca cagtgtgcca gaacaagctg tttgagagca tccaggaagg caagtatgag
     1381 tttcctgaca aggactgggc tcatatctcc aacgaggcca aagacctcat ctccaagctc
     1441 ctggttcgag acgtgaaaca gagactgagt gccgcccaag ttctgcagca cccgtgggtg
     1501 caggggcaag ctccagaaag gggactcccc acgccgcaag tcctccagag aaatagcagc
     1561 acaatggacc tgacgctctt tgcggccgag gccatcgccc ttaaccgcca gctgtctcag
     1621 catgaggaga atgaactggc gaaggagtca gaggcgctgg ccgagggcct ctgctccgtg
     1681 aggctttccc ctccctccaa gtcacgcctg gcccgccgga gggcgctgac ccaggcaggc
     1741 cgcagtggag acacgcaact gaacccaaca cccacagcgc tctgtcccac tccgggcccc
     1801 aggcccggcc ccactggaaa cctgtgaggg gcctgctctg cagctccatc caggcctttt
     1861 catccacaaa ggctctcatc ctcctttccc cagagtcctc aaggaaaaag ctttttccta
     1921 aggggttgtc tttgaaaggc aaactatcac ttgtcacttt gcataattgc ctgcggcagg
     1981 gacatctctt tactgggctc ctgcccacct gctcacccgc ctgcggatcg aggatccagc
     2041 ctgctctcac cggctggggc tgcggccttc agggagccag ccttgagaag cgtcagttga
     2101 cagaggctct tccctctctc tgcactgtca cccccctctg gcggtccttc caccttcctc
     2161 tgtcctccgg acgtcctccc ccttggctga gggaagccat cccctcgatt cagggaaggg
     2221 cagggagcct tctgcattca ggaggccaga tccgtcttcc agtcgatagc tcagagaagc
     2281 acataatctt tctttgccat gaccaaaatg tgtccgtcat ttatcatcct ctacctggtt
     2341 tgggattgct gctgaagtca gtattatttc gtgttttaca atatttggca ttttttctaa
     2401 ccgtgctctt ccgacaaaga tgagacttta aactcccact gtgagcccat ggactttcca
     2461 gagctcttag ggttcacttt tctctcctga acttccatgc atttggaagg ttttaatgag
     2521 ctatttccta ttactctaac tggttttaag ctgttcagat gatgagtgac tcagagacca
     2581 gtgtgtctgc tgctaccttc ctcgagcctg gtgtggaggg cagcgcaggt ccggggcact
     2641 gaggagctct gtgcctgatg tggagccagt ccggaggctg cccagccacc ctggtctgag
     2701 ccgtgtggtg ccttctgctg gggagctgat agctgagcat cagtggagct gcttagttat
     2761 ctaagaaaat cggtttgcat atgtcacatg ttttgacaac acaaggatgc tattatgcat
     2821 tgtgcttatt ttaataaaac tgttttaaat tcta
//
LOCUS       XM_032610862            2799 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X3, mRNA.
ACCESSION   XM_032610862
VERSION     XM_032610862.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2799
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 11 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             483..1772
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X3"
                     /protein_id="XP_032466753.1"
                     /db_xref="GeneID:116742916"
                     /translation="MGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKLTSELLG
                     EGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFF
                     EDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLK
                     PENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVF
                     TDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQ
                     EGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGQAPERGLPTPQ
                     VLQRNSSTMDLTLFAAEAIALNRQLSQHEENELAKESEALAEGLCSVRLSPPSKSRLA
                     RRRALTQAGRSGDTQLNPTPTALCPTPGPRPGPTGNL"
     misc_feature    582..1448
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(609..623,633..635,672..674,678..680,768..770,
                     816..827,837..839,843..845,951..956,960..962,966..971,
                     975..977,1014..1019,1026..1028,1092..1106,1110..1112)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(609..620,633..635,672..674,678..680,768..770,
                     816..827,837..839,966..971,975..977,1014..1019)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(621..623,837..839,843..845,951..956,960..962,
                     966..968,1026..1028,1092..1106,1110..1112)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    1014..1106
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1236..1238,1248..1250,1272..1274,1281..1283)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 gccccgcccc actcgctggg cgtggccatc agggcgcagg cgcagctcct ccctacacgc
       61 catcgggccc acccctcgga gctagtatat cttcttccgt gttcttggct gagcgagcag
      121 gtggctggtg tgcgcgacag gccttgccgg gagtcagctg aggaaaattt gaaatacagc
      181 cataccccat tttattgcac ttcacaatta tcgcgtcttt tacaatttga aggtttgtgc
      241 caaccccgcc ttgtcagatg atggttaaca ttttttagca atatttttaa attaagattt
      301 tcatgccggg tataatgaag cagaggccaa tggaaaactg aagaatgtct gctatgtaca
      361 gaggccattg aaacacttcc tgcaactgga agacagcagc cccctgacag gagcattatt
      421 gcatttggaa tttcaaggtt acagagaggg tctgcttcgc aaagttgggc agacctatag
      481 agatgggcag cagtgaacct gttcccattg cagaaagtga caagaggaag aagaagaagc
      541 ggaaggcccg ggccactgac tccttgccag gaaagtttga agatacgtac aaactgacct
      601 ctgagctgct tggagaggga gcctatgcca aagttcaagg tgccgtgagc ctgcagaatg
      661 gcaaggagta tgctgtcaaa atcattgaaa aacatgcagg acacagtcgg agtagggtat
      721 ttcgggaggt ggagacgctg tatcagtgtc aaggaaacaa gaacattttg gagctgattg
      781 agttctttga agacgacaca aggttttact tggtctttga gaaattgcaa ggaggctcca
      841 tcctgaccca catccagaag cagaagcaat tcaacgagcg agaagccagc cgagtggtgc
      901 aggatgttgc cgcagccctt gacttcctgc acaccaaagg cattgctcac cgcgatctga
      961 agccagaaaa tatattgtgt gaatctccag aaaaggtgtc tccggtgaaa atctgtgact
     1021 ttgacttggg cagtggggtg aaactgaaca actcctgcac ccccataacc acaccagagc
     1081 tgaccactcc atgtggctct gcagaatata tggcccctga ggtggtagaa gtcttcacgg
     1141 ataaggccac tttttacgac aagcgctgtg acctgtggag cctgggtgtg gtcctctaca
     1201 tcatgctgag tggctacccg ccctttgtgg gtcactgcgg agccgactgt ggctgggacc
     1261 ggggagaggt ctgcacagtg tgccagaaca agctgtttga gagcatccag gaaggcaagt
     1321 atgagtttcc tgacaaggac tgggctcata tctccaacga ggccaaagac ctcatctcca
     1381 agctcctggt tcgagacgtg aaacagagac tgagtgccgc ccaagttctg cagcacccgt
     1441 gggtgcaggg gcaagctcca gaaaggggac tccccacgcc gcaagtcctc cagagaaata
     1501 gcagcacaat ggacctgacg ctctttgcgg ccgaggccat cgcccttaac cgccagctgt
     1561 ctcagcatga ggagaatgaa ctggcgaagg agtcagaggc gctggccgag ggcctctgct
     1621 ccgtgaggct ttcccctccc tccaagtcac gcctggcccg ccggagggcg ctgacccagg
     1681 caggccgcag tggagacacg caactgaacc caacacccac agcgctctgt cccactccgg
     1741 gccccaggcc cggccccact ggaaacctgt gaggggcctg ctctgcagct ccatccaggc
     1801 cttttcatcc acaaaggctc tcatcctcct ttccccagag tcctcaagga aaaagctttt
     1861 tcctaagggg ttgtctttga aaggcaaact atcacttgtc actttgcata attgcctgcg
     1921 gcagggacat ctctttactg ggctcctgcc cacctgctca cccgcctgcg gatcgaggat
     1981 ccagcctgct ctcaccggct ggggctgcgg ccttcaggga gccagccttg agaagcgtca
     2041 gttgacagag gctcttccct ctctctgcac tgtcaccccc ctctggcggt ccttccacct
     2101 tcctctgtcc tccggacgtc ctcccccttg gctgagggaa gccatcccct cgattcaggg
     2161 aagggcaggg agccttctgc attcaggagg ccagatccgt cttccagtcg atagctcaga
     2221 gaagcacata atctttcttt gccatgacca aaatgtgtcc gtcatttatc atcctctacc
     2281 tggtttggga ttgctgctga agtcagtatt atttcgtgtt ttacaatatt tggcattttt
     2341 tctaaccgtg ctcttccgac aaagatgaga ctttaaactc ccactgtgag cccatggact
     2401 ttccagagct cttagggttc acttttctct cctgaacttc catgcatttg gaaggtttta
     2461 atgagctatt tcctattact ctaactggtt ttaagctgtt cagatgatga gtgactcaga
     2521 gaccagtgtg tctgctgcta ccttcctcga gcctggtgtg gagggcagcg caggtccggg
     2581 gcactgagga gctctgtgcc tgatgtggag ccagtccgga ggctgcccag ccaccctggt
     2641 ctgagccgtg tggtgccttc tgctggggag ctgatagctg agcatcagtg gagctgctta
     2701 gttatctaag aaaatcggtt tgcatatgtc acatgttttg acaacacaag gatgctatta
     2761 tgcattgtgc ttattttaat aaaactgttt taaattcta
//
LOCUS       XM_032610871            2620 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X4, mRNA.
ACCESSION   XM_032610871
VERSION     XM_032610871.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2620
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 9 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             304..1593
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X3"
                     /protein_id="XP_032466762.1"
                     /db_xref="GeneID:116742916"
                     /translation="MGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKLTSELLG
                     EGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFF
                     EDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLK
                     PENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVF
                     TDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQ
                     EGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGQAPERGLPTPQ
                     VLQRNSSTMDLTLFAAEAIALNRQLSQHEENELAKESEALAEGLCSVRLSPPSKSRLA
                     RRRALTQAGRSGDTQLNPTPTALCPTPGPRPGPTGNL"
     misc_feature    403..1269
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(430..444,454..456,493..495,499..501,589..591,
                     637..648,658..660,664..666,772..777,781..783,787..792,
                     796..798,835..840,847..849,913..927,931..933)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(430..441,454..456,493..495,499..501,589..591,
                     637..648,658..660,787..792,796..798,835..840)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(442..444,658..660,664..666,772..777,781..783,
                     787..789,847..849,913..927,931..933)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    835..927
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1057..1059,1069..1071,1093..1095,1102..1104)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 ctcctcccta cacgccatcg ggcccacccc tcggagctag tatatcttct tccgtgttct
       61 tggctgagcg agcaggtggc tggtgtgcgc gacaggcctt gccgggagtc agctgagatt
      121 ttcatgccgg gtataatgaa gcagaggcca atggaaaact gaagaatgtc tgctatgtac
      181 agaggccatt gaaacacttc ctgcaactgg aagacagcag ccccctgaca ggagcattat
      241 tgcatttgga atttcaaggt tacagagagg gtctgcttcg caaagttggg cagacctata
      301 gagatgggca gcagtgaacc tgttcccatt gcagaaagtg acaagaggaa gaagaagaag
      361 cggaaggccc gggccactga ctccttgcca ggaaagtttg aagatacgta caaactgacc
      421 tctgagctgc ttggagaggg agcctatgcc aaagttcaag gtgccgtgag cctgcagaat
      481 ggcaaggagt atgctgtcaa aatcattgaa aaacatgcag gacacagtcg gagtagggta
      541 tttcgggagg tggagacgct gtatcagtgt caaggaaaca agaacatttt ggagctgatt
      601 gagttctttg aagacgacac aaggttttac ttggtctttg agaaattgca aggaggctcc
      661 atcctgaccc acatccagaa gcagaagcaa ttcaacgagc gagaagccag ccgagtggtg
      721 caggatgttg ccgcagccct tgacttcctg cacaccaaag gcattgctca ccgcgatctg
      781 aagccagaaa atatattgtg tgaatctcca gaaaaggtgt ctccggtgaa aatctgtgac
      841 tttgacttgg gcagtggggt gaaactgaac aactcctgca cccccataac cacaccagag
      901 ctgaccactc catgtggctc tgcagaatat atggcccctg aggtggtaga agtcttcacg
      961 gataaggcca ctttttacga caagcgctgt gacctgtgga gcctgggtgt ggtcctctac
     1021 atcatgctga gtggctaccc gccctttgtg ggtcactgcg gagccgactg tggctgggac
     1081 cggggagagg tctgcacagt gtgccagaac aagctgtttg agagcatcca ggaaggcaag
     1141 tatgagtttc ctgacaagga ctgggctcat atctccaacg aggccaaaga cctcatctcc
     1201 aagctcctgg ttcgagacgt gaaacagaga ctgagtgccg cccaagttct gcagcacccg
     1261 tgggtgcagg ggcaagctcc agaaagggga ctccccacgc cgcaagtcct ccagagaaat
     1321 agcagcacaa tggacctgac gctctttgcg gccgaggcca tcgcccttaa ccgccagctg
     1381 tctcagcatg aggagaatga actggcgaag gagtcagagg cgctggccga gggcctctgc
     1441 tccgtgaggc tttcccctcc ctccaagtca cgcctggccc gccggagggc gctgacccag
     1501 gcaggccgca gtggagacac gcaactgaac ccaacaccca cagcgctctg tcccactccg
     1561 ggccccaggc ccggccccac tggaaacctg tgaggggcct gctctgcagc tccatccagg
     1621 ccttttcatc cacaaaggct ctcatcctcc tttccccaga gtcctcaagg aaaaagcttt
     1681 ttcctaaggg gttgtctttg aaaggcaaac tatcacttgt cactttgcat aattgcctgc
     1741 ggcagggaca tctctttact gggctcctgc ccacctgctc acccgcctgc ggatcgagga
     1801 tccagcctgc tctcaccggc tggggctgcg gccttcaggg agccagcctt gagaagcgtc
     1861 agttgacaga ggctcttccc tctctctgca ctgtcacccc cctctggcgg tccttccacc
     1921 ttcctctgtc ctccggacgt cctccccctt ggctgaggga agccatcccc tcgattcagg
     1981 gaagggcagg gagccttctg cattcaggag gccagatccg tcttccagtc gatagctcag
     2041 agaagcacat aatctttctt tgccatgacc aaaatgtgtc cgtcatttat catcctctac
     2101 ctggtttggg attgctgctg aagtcagtat tatttcgtgt tttacaatat ttggcatttt
     2161 ttctaaccgt gctcttccga caaagatgag actttaaact cccactgtga gcccatggac
     2221 tttccagagc tcttagggtt cacttttctc tcctgaactt ccatgcattt ggaaggtttt
     2281 aatgagctat ttcctattac tctaactggt tttaagctgt tcagatgatg agtgactcag
     2341 agaccagtgt gtctgctgct accttcctcg agcctggtgt ggagggcagc gcaggtccgg
     2401 ggcactgagg agctctgtgc ctgatgtgga gccagtccgg aggctgccca gccaccctgg
     2461 tctgagccgt gtggtgcctt ctgctgggga gctgatagct gagcatcagt ggagctgctt
     2521 agttatctaa gaaaatcggt ttgcatatgt cacatgtttt gacaacacaa ggatgctatt
     2581 atgcattgtg cttattttaa taaaactgtt ttaaattcta
//
LOCUS       XM_032610881            2616 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X5, mRNA.
ACCESSION   XM_032610881
VERSION     XM_032610881.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2616
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2616
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 9 long SRA reads, 20
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116742916"
     CDS             300..1589
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X3"
                     /protein_id="XP_032466772.1"
                     /db_xref="GeneID:116742916"
                     /translation="MGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKLTSELLG
                     EGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFF
                     EDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLK
                     PENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVF
                     TDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQ
                     EGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGQAPERGLPTPQ
                     VLQRNSSTMDLTLFAAEAIALNRQLSQHEENELAKESEALAEGLCSVRLSPPSKSRLA
                     RRRALTQAGRSGDTQLNPTPTALCPTPGPRPGPTGNL"
     misc_feature    399..1265
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(426..440,450..452,489..491,495..497,585..587,
                     633..644,654..656,660..662,768..773,777..779,783..788,
                     792..794,831..836,843..845,909..923,927..929)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(426..437,450..452,489..491,495..497,585..587,
                     633..644,654..656,783..788,792..794,831..836)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(438..440,654..656,660..662,768..773,777..779,
                     783..785,843..845,909..923,927..929)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    831..923
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1053..1055,1065..1067,1089..1091,1098..1100)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 ggtggctggt gtgcgcgaca ggccttgccg ggagtcagct gaggaaaatt tgaaatacag
       61 ccatacccca ttttattgca cttcacaatt atcgcgtctt ttacaatttg aagattttca
      121 tgccgggtat aatgaagcag aggccaatgg aaaactgaag aatgtctgct atgtacagag
      181 gccattgaaa cacttcctgc aactggaaga cagcagcccc ctgacaggag cattattgca
      241 tttggaattt caaggttaca gagagggtct gcttcgcaaa gttgggcaga cctatagaga
      301 tgggcagcag tgaacctgtt cccattgcag aaagtgacaa gaggaagaag aagaagcgga
      361 aggcccgggc cactgactcc ttgccaggaa agtttgaaga tacgtacaaa ctgacctctg
      421 agctgcttgg agagggagcc tatgccaaag ttcaaggtgc cgtgagcctg cagaatggca
      481 aggagtatgc tgtcaaaatc attgaaaaac atgcaggaca cagtcggagt agggtatttc
      541 gggaggtgga gacgctgtat cagtgtcaag gaaacaagaa cattttggag ctgattgagt
      601 tctttgaaga cgacacaagg ttttacttgg tctttgagaa attgcaagga ggctccatcc
      661 tgacccacat ccagaagcag aagcaattca acgagcgaga agccagccga gtggtgcagg
      721 atgttgccgc agcccttgac ttcctgcaca ccaaaggcat tgctcaccgc gatctgaagc
      781 cagaaaatat attgtgtgaa tctccagaaa aggtgtctcc ggtgaaaatc tgtgactttg
      841 acttgggcag tggggtgaaa ctgaacaact cctgcacccc cataaccaca ccagagctga
      901 ccactccatg tggctctgca gaatatatgg cccctgaggt ggtagaagtc ttcacggata
      961 aggccacttt ttacgacaag cgctgtgacc tgtggagcct gggtgtggtc ctctacatca
     1021 tgctgagtgg ctacccgccc tttgtgggtc actgcggagc cgactgtggc tgggaccggg
     1081 gagaggtctg cacagtgtgc cagaacaagc tgtttgagag catccaggaa ggcaagtatg
     1141 agtttcctga caaggactgg gctcatatct ccaacgaggc caaagacctc atctccaagc
     1201 tcctggttcg agacgtgaaa cagagactga gtgccgccca agttctgcag cacccgtggg
     1261 tgcaggggca agctccagaa aggggactcc ccacgccgca agtcctccag agaaatagca
     1321 gcacaatgga cctgacgctc tttgcggccg aggccatcgc ccttaaccgc cagctgtctc
     1381 agcatgagga gaatgaactg gcgaaggagt cagaggcgct ggccgagggc ctctgctccg
     1441 tgaggctttc ccctccctcc aagtcacgcc tggcccgccg gagggcgctg acccaggcag
     1501 gccgcagtgg agacacgcaa ctgaacccaa cacccacagc gctctgtccc actccgggcc
     1561 ccaggcccgg ccccactgga aacctgtgag gggcctgctc tgcagctcca tccaggcctt
     1621 ttcatccaca aaggctctca tcctcctttc cccagagtcc tcaaggaaaa agctttttcc
     1681 taaggggttg tctttgaaag gcaaactatc acttgtcact ttgcataatt gcctgcggca
     1741 gggacatctc tttactgggc tcctgcccac ctgctcaccc gcctgcggat cgaggatcca
     1801 gcctgctctc accggctggg gctgcggcct tcagggagcc agccttgaga agcgtcagtt
     1861 gacagaggct cttccctctc tctgcactgt cacccccctc tggcggtcct tccaccttcc
     1921 tctgtcctcc ggacgtcctc ccccttggct gagggaagcc atcccctcga ttcagggaag
     1981 ggcagggagc cttctgcatt caggaggcca gatccgtctt ccagtcgata gctcagagaa
     2041 gcacataatc tttctttgcc atgaccaaaa tgtgtccgtc atttatcatc ctctacctgg
     2101 tttgggattg ctgctgaagt cagtattatt tcgtgtttta caatatttgg cattttttct
     2161 aaccgtgctc ttccgacaaa gatgagactt taaactccca ctgtgagccc atggactttc
     2221 cagagctctt agggttcact tttctctcct gaacttccat gcatttggaa ggttttaatg
     2281 agctatttcc tattactcta actggtttta agctgttcag atgatgagtg actcagagac
     2341 cagtgtgtct gctgctacct tcctcgagcc tggtgtggag ggcagcgcag gtccggggca
     2401 ctgaggagct ctgtgcctga tgtggagcca gtccggaggc tgcccagcca ccctggtctg
     2461 agccgtgtgg tgccttctgc tggggagctg atagctgagc atcagtggag ctgcttagtt
     2521 atctaagaaa atcggtttgc atatgtcaca tgttttgaca acacaaggat gctattatgc
     2581 attgtgctta ttttaataaa actgttttaa attcta
//
LOCUS       XM_032610887            2634 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X6, mRNA.
ACCESSION   XM_032610887
VERSION     XM_032610887.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2634
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 9 long SRA reads, 20
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116742916"
     CDS             318..1607
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X3"
                     /protein_id="XP_032466778.1"
                     /db_xref="GeneID:116742916"
                     /translation="MGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKLTSELLG
                     EGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFF
                     EDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLK
                     PENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVF
                     TDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQ
                     EGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGQAPERGLPTPQ
                     VLQRNSSTMDLTLFAAEAIALNRQLSQHEENELAKESEALAEGLCSVRLSPPSKSRLA
                     RRRALTQAGRSGDTQLNPTPTALCPTPGPRPGPTGNL"
     misc_feature    417..1283
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(444..458,468..470,507..509,513..515,603..605,
                     651..662,672..674,678..680,786..791,795..797,801..806,
                     810..812,849..854,861..863,927..941,945..947)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(444..455,468..470,507..509,513..515,603..605,
                     651..662,672..674,801..806,810..812,849..854)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(456..458,672..674,678..680,786..791,795..797,
                     801..803,861..863,927..941,945..947)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    849..941
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1071..1073,1083..1085,1107..1109,1116..1118)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 cgacgcgggc tcggcaggca gacgggcgag aggaccggcg cggccggcga cgagcaaaag
       61 gaggggaccg cctgctgggg atgtgacctc gcggccagag tggactcgcg ctagcccacc
      121 cggcggaccc cattttcatg ccgggtataa tgaagcagag gccaatggaa aactgaagaa
      181 tgtctgctat gtacagaggc cattgaaaca cttcctgcaa ctggaagaca gcagccccct
      241 gacaggagca ttattgcatt tggaatttca aggttacaga gagggtctgc ttcgcaaagt
      301 tgggcagacc tatagagatg ggcagcagtg aacctgttcc cattgcagaa agtgacaaga
      361 ggaagaagaa gaagcggaag gcccgggcca ctgactcctt gccaggaaag tttgaagata
      421 cgtacaaact gacctctgag ctgcttggag agggagccta tgccaaagtt caaggtgccg
      481 tgagcctgca gaatggcaag gagtatgctg tcaaaatcat tgaaaaacat gcaggacaca
      541 gtcggagtag ggtatttcgg gaggtggaga cgctgtatca gtgtcaagga aacaagaaca
      601 ttttggagct gattgagttc tttgaagacg acacaaggtt ttacttggtc tttgagaaat
      661 tgcaaggagg ctccatcctg acccacatcc agaagcagaa gcaattcaac gagcgagaag
      721 ccagccgagt ggtgcaggat gttgccgcag cccttgactt cctgcacacc aaaggcattg
      781 ctcaccgcga tctgaagcca gaaaatatat tgtgtgaatc tccagaaaag gtgtctccgg
      841 tgaaaatctg tgactttgac ttgggcagtg gggtgaaact gaacaactcc tgcaccccca
      901 taaccacacc agagctgacc actccatgtg gctctgcaga atatatggcc cctgaggtgg
      961 tagaagtctt cacggataag gccacttttt acgacaagcg ctgtgacctg tggagcctgg
     1021 gtgtggtcct ctacatcatg ctgagtggct acccgccctt tgtgggtcac tgcggagccg
     1081 actgtggctg ggaccgggga gaggtctgca cagtgtgcca gaacaagctg tttgagagca
     1141 tccaggaagg caagtatgag tttcctgaca aggactgggc tcatatctcc aacgaggcca
     1201 aagacctcat ctccaagctc ctggttcgag acgtgaaaca gagactgagt gccgcccaag
     1261 ttctgcagca cccgtgggtg caggggcaag ctccagaaag gggactcccc acgccgcaag
     1321 tcctccagag aaatagcagc acaatggacc tgacgctctt tgcggccgag gccatcgccc
     1381 ttaaccgcca gctgtctcag catgaggaga atgaactggc gaaggagtca gaggcgctgg
     1441 ccgagggcct ctgctccgtg aggctttccc ctccctccaa gtcacgcctg gcccgccgga
     1501 gggcgctgac ccaggcaggc cgcagtggag acacgcaact gaacccaaca cccacagcgc
     1561 tctgtcccac tccgggcccc aggcccggcc ccactggaaa cctgtgaggg gcctgctctg
     1621 cagctccatc caggcctttt catccacaaa ggctctcatc ctcctttccc cagagtcctc
     1681 aaggaaaaag ctttttccta aggggttgtc tttgaaaggc aaactatcac ttgtcacttt
     1741 gcataattgc ctgcggcagg gacatctctt tactgggctc ctgcccacct gctcacccgc
     1801 ctgcggatcg aggatccagc ctgctctcac cggctggggc tgcggccttc agggagccag
     1861 ccttgagaag cgtcagttga cagaggctct tccctctctc tgcactgtca cccccctctg
     1921 gcggtccttc caccttcctc tgtcctccgg acgtcctccc ccttggctga gggaagccat
     1981 cccctcgatt cagggaaggg cagggagcct tctgcattca ggaggccaga tccgtcttcc
     2041 agtcgatagc tcagagaagc acataatctt tctttgccat gaccaaaatg tgtccgtcat
     2101 ttatcatcct ctacctggtt tgggattgct gctgaagtca gtattatttc gtgttttaca
     2161 atatttggca ttttttctaa ccgtgctctt ccgacaaaga tgagacttta aactcccact
     2221 gtgagcccat ggactttcca gagctcttag ggttcacttt tctctcctga acttccatgc
     2281 atttggaagg ttttaatgag ctatttccta ttactctaac tggttttaag ctgttcagat
     2341 gatgagtgac tcagagacca gtgtgtctgc tgctaccttc ctcgagcctg gtgtggaggg
     2401 cagcgcaggt ccggggcact gaggagctct gtgcctgatg tggagccagt ccggaggctg
     2461 cccagccacc ctggtctgag ccgtgtggtg ccttctgctg gggagctgat agctgagcat
     2521 cagtggagct gcttagttat ctaagaaaat cggtttgcat atgtcacatg ttttgacaac
     2581 acaaggatgc tattatgcat tgtgcttatt ttaataaaac tgttttaaat tcta
//
LOCUS       XM_032610893            2910 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X7, mRNA.
ACCESSION   XM_032610893
VERSION     XM_032610893.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2910
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 20 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             594..1883
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X3"
                     /protein_id="XP_032466784.1"
                     /db_xref="GeneID:116742916"
                     /translation="MGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKLTSELLG
                     EGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFF
                     EDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLK
                     PENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVF
                     TDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQ
                     EGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGQAPERGLPTPQ
                     VLQRNSSTMDLTLFAAEAIALNRQLSQHEENELAKESEALAEGLCSVRLSPPSKSRLA
                     RRRALTQAGRSGDTQLNPTPTALCPTPGPRPGPTGNL"
     misc_feature    693..1559
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(720..734,744..746,783..785,789..791,879..881,
                     927..938,948..950,954..956,1062..1067,1071..1073,
                     1077..1082,1086..1088,1125..1130,1137..1139,1203..1217,
                     1221..1223)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(720..731,744..746,783..785,789..791,879..881,
                     927..938,948..950,1077..1082,1086..1088,1125..1130)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(732..734,948..950,954..956,1062..1067,1071..1073,
                     1077..1079,1137..1139,1203..1217,1221..1223)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    1125..1217
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1347..1349,1359..1361,1383..1385,1392..1394)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 ctacacgcca tcgggcccac ccctcggagc tagtatatct tcttccgtgt tcttggctga
       61 gcgagcaggt ggctggtgtg cgcgacaggc cttgccggga gtcagctgag gaaaatttga
      121 aatacagcca taccccattt tattgcactt cacaattatc gcgtctttta caatttgaag
      181 gtttgtgcca accccgcctt gtcagatgat ggttaacatt ttttagcaat atttttaaat
      241 taagattttc atgccgggta taatgaagca gaggccaatg gaaaactgaa gaatgtctgc
      301 tatgtacaga ggccattgaa acacttcctg caactggaag acagcagccc cctgacagga
      361 gcattattgc atttggaatt tcaaggttac agagagggtc tgcttcgcaa agttgggcag
      421 acctataggt ctcctgatgc caagcccacg agccttccct gtcagcagtg tgcttcctct
      481 ccagctctac ctccacggat acacaagtag tggaccgacc gccaagcctg gcccaagagg
      541 aaagcaaggg ctggaggcag tgaagtgctg ggagcctcca tgccagctga gagatgggca
      601 gcagtgaacc tgttcccatt gcagaaagtg acaagaggaa gaagaagaag cggaaggccc
      661 gggccactga ctccttgcca ggaaagtttg aagatacgta caaactgacc tctgagctgc
      721 ttggagaggg agcctatgcc aaagttcaag gtgccgtgag cctgcagaat ggcaaggagt
      781 atgctgtcaa aatcattgaa aaacatgcag gacacagtcg gagtagggta tttcgggagg
      841 tggagacgct gtatcagtgt caaggaaaca agaacatttt ggagctgatt gagttctttg
      901 aagacgacac aaggttttac ttggtctttg agaaattgca aggaggctcc atcctgaccc
      961 acatccagaa gcagaagcaa ttcaacgagc gagaagccag ccgagtggtg caggatgttg
     1021 ccgcagccct tgacttcctg cacaccaaag gcattgctca ccgcgatctg aagccagaaa
     1081 atatattgtg tgaatctcca gaaaaggtgt ctccggtgaa aatctgtgac tttgacttgg
     1141 gcagtggggt gaaactgaac aactcctgca cccccataac cacaccagag ctgaccactc
     1201 catgtggctc tgcagaatat atggcccctg aggtggtaga agtcttcacg gataaggcca
     1261 ctttttacga caagcgctgt gacctgtgga gcctgggtgt ggtcctctac atcatgctga
     1321 gtggctaccc gccctttgtg ggtcactgcg gagccgactg tggctgggac cggggagagg
     1381 tctgcacagt gtgccagaac aagctgtttg agagcatcca ggaaggcaag tatgagtttc
     1441 ctgacaagga ctgggctcat atctccaacg aggccaaaga cctcatctcc aagctcctgg
     1501 ttcgagacgt gaaacagaga ctgagtgccg cccaagttct gcagcacccg tgggtgcagg
     1561 ggcaagctcc agaaagggga ctccccacgc cgcaagtcct ccagagaaat agcagcacaa
     1621 tggacctgac gctctttgcg gccgaggcca tcgcccttaa ccgccagctg tctcagcatg
     1681 aggagaatga actggcgaag gagtcagagg cgctggccga gggcctctgc tccgtgaggc
     1741 tttcccctcc ctccaagtca cgcctggccc gccggagggc gctgacccag gcaggccgca
     1801 gtggagacac gcaactgaac ccaacaccca cagcgctctg tcccactccg ggccccaggc
     1861 ccggccccac tggaaacctg tgaggggcct gctctgcagc tccatccagg ccttttcatc
     1921 cacaaaggct ctcatcctcc tttccccaga gtcctcaagg aaaaagcttt ttcctaaggg
     1981 gttgtctttg aaaggcaaac tatcacttgt cactttgcat aattgcctgc ggcagggaca
     2041 tctctttact gggctcctgc ccacctgctc acccgcctgc ggatcgagga tccagcctgc
     2101 tctcaccggc tggggctgcg gccttcaggg agccagcctt gagaagcgtc agttgacaga
     2161 ggctcttccc tctctctgca ctgtcacccc cctctggcgg tccttccacc ttcctctgtc
     2221 ctccggacgt cctccccctt ggctgaggga agccatcccc tcgattcagg gaagggcagg
     2281 gagccttctg cattcaggag gccagatccg tcttccagtc gatagctcag agaagcacat
     2341 aatctttctt tgccatgacc aaaatgtgtc cgtcatttat catcctctac ctggtttggg
     2401 attgctgctg aagtcagtat tatttcgtgt tttacaatat ttggcatttt ttctaaccgt
     2461 gctcttccga caaagatgag actttaaact cccactgtga gcccatggac tttccagagc
     2521 tcttagggtt cacttttctc tcctgaactt ccatgcattt ggaaggtttt aatgagctat
     2581 ttcctattac tctaactggt tttaagctgt tcagatgatg agtgactcag agaccagtgt
     2641 gtctgctgct accttcctcg agcctggtgt ggagggcagc gcaggtccgg ggcactgagg
     2701 agctctgtgc ctgatgtgga gccagtccgg aggctgccca gccaccctgg tctgagccgt
     2761 gtggtgcctt ctgctgggga gctgatagct gagcatcagt ggagctgctt agttatctaa
     2821 gaaaatcggt ttgcatatgt cacatgtttt gacaacacaa ggatgctatt atgcattgtg
     2881 cttattttaa taaaactgtt ttaaattcta
//
LOCUS       XM_032610895            2382 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X8, mRNA.
ACCESSION   XM_032610895
VERSION     XM_032610895.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2382
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             92..1084
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X4"
                     /protein_id="XP_032466786.1"
                     /db_xref="GeneID:116742916"
                     /translation="MQNRPEMGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKL
                     TSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNIL
                     ELIEFFEDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGI
                     AHRDLKPENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAP
                     EVVEVFTDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNK
                     LFESIQEGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGK"
     misc_feature    209..1075
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(236..250,260..262,299..301,305..307,395..397,
                     443..454,464..466,470..472,578..583,587..589,593..598,
                     602..604,641..646,653..655,719..733,737..739)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(236..247,260..262,299..301,305..307,395..397,
                     443..454,464..466,593..598,602..604,641..646)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(248..250,464..466,470..472,578..583,587..589,
                     593..595,653..655,719..733,737..739)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    641..733
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(863..865,875..877,899..901,908..910)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 tttcaaaaac aactctcctt caacaagttc tgtttccaag gaaagtctta accatttgtc
       61 ccttctggcg caccctcttc cattgaaatc catgcagaat agaccagaga tgggcagcag
      121 tgaacctgtt cccattgcag aaagtgacaa gaggaagaag aagaagcgga aggcccgggc
      181 cactgactcc ttgccaggaa agtttgaaga tacgtacaaa ctgacctctg agctgcttgg
      241 agagggagcc tatgccaaag ttcaaggtgc cgtgagcctg cagaatggca aggagtatgc
      301 tgtcaaaatc attgaaaaac atgcaggaca cagtcggagt agggtatttc gggaggtgga
      361 gacgctgtat cagtgtcaag gaaacaagaa cattttggag ctgattgagt tctttgaaga
      421 cgacacaagg ttttacttgg tctttgagaa attgcaagga ggctccatcc tgacccacat
      481 ccagaagcag aagcaattca acgagcgaga agccagccga gtggtgcagg atgttgccgc
      541 agcccttgac ttcctgcaca ccaaaggcat tgctcaccgc gatctgaagc cagaaaatat
      601 attgtgtgaa tctccagaaa aggtgtctcc ggtgaaaatc tgtgactttg acttgggcag
      661 tggggtgaaa ctgaacaact cctgcacccc cataaccaca ccagagctga ccactccatg
      721 tggctctgca gaatatatgg cccctgaggt ggtagaagtc ttcacggata aggccacttt
      781 ttacgacaag cgctgtgacc tgtggagcct gggtgtggtc ctctacatca tgctgagtgg
      841 ctacccgccc tttgtgggtc actgcggagc cgactgtggc tgggaccggg gagaggtctg
      901 cacagtgtgc cagaacaagc tgtttgagag catccaggaa ggcaagtatg agtttcctga
      961 caaggactgg gctcatatct ccaacgaggc caaagacctc atctccaagc tcctggttcg
     1021 agacgtgaaa cagagactga gtgccgccca agttctgcag cacccgtggg tgcaggggaa
     1081 atagcagcac aatggacctg acgctctttg cggccgaggc catcgccctt aaccgccagc
     1141 tgtctcagca tgaggagaat gaactggcga aggagtcaga ggcgctggcc gagggcctct
     1201 gctccgtgag gctttcccct ccctccaagt cacgcctggc ccgccggagg gcgctgaccc
     1261 aggcaggccg cagtggagac acgcaactga acccaacacc cacagcgctc tgtcccactc
     1321 cgggccccag gcccggcccc actggaaacc tgtgaggggc ctgctctgca gctccatcca
     1381 ggccttttca tccacaaagg ctctcatcct cctttcccca gagtcctcaa ggaaaaagct
     1441 ttttcctaag gggttgtctt tgaaaggcaa actatcactt gtcactttgc ataattgcct
     1501 gcggcaggga catctcttta ctgggctcct gcccacctgc tcacccgcct gcggatcgag
     1561 gatccagcct gctctcaccg gctggggctg cggccttcag ggagccagcc ttgagaagcg
     1621 tcagttgaca gaggctcttc cctctctctg cactgtcacc cccctctggc ggtccttcca
     1681 ccttcctctg tcctccggac gtcctccccc ttggctgagg gaagccatcc cctcgattca
     1741 gggaagggca gggagccttc tgcattcagg aggccagatc cgtcttccag tcgatagctc
     1801 agagaagcac ataatctttc tttgccatga ccaaaatgtg tccgtcattt atcatcctct
     1861 acctggtttg ggattgctgc tgaagtcagt attatttcgt gttttacaat atttggcatt
     1921 ttttctaacc gtgctcttcc gacaaagatg agactttaaa ctcccactgt gagcccatgg
     1981 actttccaga gctcttaggg ttcacttttc tctcctgaac ttccatgcat ttggaaggtt
     2041 ttaatgagct atttcctatt actctaactg gttttaagct gttcagatga tgagtgactc
     2101 agagaccagt gtgtctgctg ctaccttcct cgagcctggt gtggagggca gcgcaggtcc
     2161 ggggcactga ggagctctgt gcctgatgtg gagccagtcc ggaggctgcc cagccaccct
     2221 ggtctgagcc gtgtggtgcc ttctgctggg gagctgatag ctgagcatca gtggagctgc
     2281 ttagttatct aagaaaatcg gtttgcatat gtcacatgtt ttgacaacac aaggatgcta
     2341 ttatgcattg tgcttatttt aataaaactg ttttaaattc ta
//
LOCUS       XM_032610897            2199 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X9, mRNA.
ACCESSION   XM_032610897
VERSION     XM_032610897.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2199
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             60..1172
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X5"
                     /protein_id="XP_032466788.1"
                     /db_xref="GeneID:116742916"
                     /translation="MPGFTLQIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFFE
                     DDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLKP
                     ENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVFT
                     DKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQE
                     GKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGQAPERGLPTPQV
                     LQRNSSTMDLTLFAAEAIALNRQLSQHEENELAKESEALAEGLCSVRLSPPSKSRLAR
                     RRALTQAGRSGDTQLNPTPTALCPTPGPRPGPTGNL"
     misc_feature    69..848
                     /gene="MKNK1"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
ORIGIN      
        1 ggtgccgtga gcctgcagaa tggcaaggag tatgctgtca aagtgagtgt ctcatctgga
       61 tgccaggctt tactttgcag atcattgaaa aacatgcagg acacagtcgg agtagggtat
      121 ttcgggaggt ggagacgctg tatcagtgtc aaggaaacaa gaacattttg gagctgattg
      181 agttctttga agacgacaca aggttttact tggtctttga gaaattgcaa ggaggctcca
      241 tcctgaccca catccagaag cagaagcaat tcaacgagcg agaagccagc cgagtggtgc
      301 aggatgttgc cgcagccctt gacttcctgc acaccaaagg cattgctcac cgcgatctga
      361 agccagaaaa tatattgtgt gaatctccag aaaaggtgtc tccggtgaaa atctgtgact
      421 ttgacttggg cagtggggtg aaactgaaca actcctgcac ccccataacc acaccagagc
      481 tgaccactcc atgtggctct gcagaatata tggcccctga ggtggtagaa gtcttcacgg
      541 ataaggccac tttttacgac aagcgctgtg acctgtggag cctgggtgtg gtcctctaca
      601 tcatgctgag tggctacccg ccctttgtgg gtcactgcgg agccgactgt ggctgggacc
      661 ggggagaggt ctgcacagtg tgccagaaca agctgtttga gagcatccag gaaggcaagt
      721 atgagtttcc tgacaaggac tgggctcata tctccaacga ggccaaagac ctcatctcca
      781 agctcctggt tcgagacgtg aaacagagac tgagtgccgc ccaagttctg cagcacccgt
      841 gggtgcaggg gcaagctcca gaaaggggac tccccacgcc gcaagtcctc cagagaaata
      901 gcagcacaat ggacctgacg ctctttgcgg ccgaggccat cgcccttaac cgccagctgt
      961 ctcagcatga ggagaatgaa ctggcgaagg agtcagaggc gctggccgag ggcctctgct
     1021 ccgtgaggct ttcccctccc tccaagtcac gcctggcccg ccggagggcg ctgacccagg
     1081 caggccgcag tggagacacg caactgaacc caacacccac agcgctctgt cccactccgg
     1141 gccccaggcc cggccccact ggaaacctgt gaggggcctg ctctgcagct ccatccaggc
     1201 cttttcatcc acaaaggctc tcatcctcct ttccccagag tcctcaagga aaaagctttt
     1261 tcctaagggg ttgtctttga aaggcaaact atcacttgtc actttgcata attgcctgcg
     1321 gcagggacat ctctttactg ggctcctgcc cacctgctca cccgcctgcg gatcgaggat
     1381 ccagcctgct ctcaccggct ggggctgcgg ccttcaggga gccagccttg agaagcgtca
     1441 gttgacagag gctcttccct ctctctgcac tgtcaccccc ctctggcggt ccttccacct
     1501 tcctctgtcc tccggacgtc ctcccccttg gctgagggaa gccatcccct cgattcaggg
     1561 aagggcaggg agccttctgc attcaggagg ccagatccgt cttccagtcg atagctcaga
     1621 gaagcacata atctttcttt gccatgacca aaatgtgtcc gtcatttatc atcctctacc
     1681 tggtttggga ttgctgctga agtcagtatt atttcgtgtt ttacaatatt tggcattttt
     1741 tctaaccgtg ctcttccgac aaagatgaga ctttaaactc ccactgtgag cccatggact
     1801 ttccagagct cttagggttc acttttctct cctgaacttc catgcatttg gaaggtttta
     1861 atgagctatt tcctattact ctaactggtt ttaagctgtt cagatgatga gtgactcaga
     1921 gaccagtgtg tctgctgcta ccttcctcga gcctggtgtg gagggcagcg caggtccggg
     1981 gcactgagga gctctgtgcc tgatgtggag ccagtccgga ggctgcccag ccaccctggt
     2041 ctgagccgtg tggtgccttc tgctggggag ctgatagctg agcatcagtg gagctgctta
     2101 gttatctaag aaaatcggtt tgcatatgtc acatgttttg acaacacaag gatgctatta
     2161 tgcattgtgc ttattttaat aaaactgttt taaattcta
//
LOCUS       XM_032610899            2703 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X10, mRNA.
ACCESSION   XM_032610899
VERSION     XM_032610899.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2703
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 7 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             431..1405
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X6"
                     /protein_id="XP_032466790.1"
                     /db_xref="GeneID:116742916"
                     /translation="MGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKLTSELLG
                     EGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFF
                     EDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLK
                     PENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVF
                     TDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQ
                     EGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGK"
     misc_feature    530..1396
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(557..571,581..583,620..622,626..628,716..718,
                     764..775,785..787,791..793,899..904,908..910,914..919,
                     923..925,962..967,974..976,1040..1054,1058..1060)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(557..568,581..583,620..622,626..628,716..718,
                     764..775,785..787,914..919,923..925,962..967)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(569..571,785..787,791..793,899..904,908..910,
                     914..916,974..976,1040..1054,1058..1060)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    962..1054
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1184..1186,1196..1198,1220..1222,1229..1231)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 ctacacgcca tcgggcccac ccctcggagc tagtatatct tcttccgtgt tcttggctga
       61 gcgagcaggt ggctggtgtg cgcgacaggc cttgccggga gtcagctgag gaaaatttga
      121 aatacagcca taccccattt tattgcactt cacaattatc gcgtctttta caatttgaag
      181 gtttgtgcca accccgcctt gtcagatgat ggttaacatt ttttagcaat atttttaaat
      241 taagattttc atgccgggta taatgaagca gaggccaatg gaaaactgaa gaatgtctgc
      301 tatgtacaga ggccattgaa acacttcctg caactggaag acagcagccc cctgacagga
      361 gcattattgc atttggaatt tcaaggttac agagagggtc tgcttcgcaa agttgggcag
      421 acctatagag atgggcagca gtgaacctgt tcccattgca gaaagtgaca agaggaagaa
      481 gaagaagcgg aaggcccggg ccactgactc cttgccagga aagtttgaag atacgtacaa
      541 actgacctct gagctgcttg gagagggagc ctatgccaaa gttcaaggtg ccgtgagcct
      601 gcagaatggc aaggagtatg ctgtcaaaat cattgaaaaa catgcaggac acagtcggag
      661 tagggtattt cgggaggtgg agacgctgta tcagtgtcaa ggaaacaaga acattttgga
      721 gctgattgag ttctttgaag acgacacaag gttttacttg gtctttgaga aattgcaagg
      781 aggctccatc ctgacccaca tccagaagca gaagcaattc aacgagcgag aagccagccg
      841 agtggtgcag gatgttgccg cagcccttga cttcctgcac accaaaggca ttgctcaccg
      901 cgatctgaag ccagaaaata tattgtgtga atctccagaa aaggtgtctc cggtgaaaat
      961 ctgtgacttt gacttgggca gtggggtgaa actgaacaac tcctgcaccc ccataaccac
     1021 accagagctg accactccat gtggctctgc agaatatatg gcccctgagg tggtagaagt
     1081 cttcacggat aaggccactt tttacgacaa gcgctgtgac ctgtggagcc tgggtgtggt
     1141 cctctacatc atgctgagtg gctacccgcc ctttgtgggt cactgcggag ccgactgtgg
     1201 ctgggaccgg ggagaggtct gcacagtgtg ccagaacaag ctgtttgaga gcatccagga
     1261 aggcaagtat gagtttcctg acaaggactg ggctcatatc tccaacgagg ccaaagacct
     1321 catctccaag ctcctggttc gagacgtgaa acagagactg agtgccgccc aagttctgca
     1381 gcacccgtgg gtgcagggga aatagcagca caatggacct gacgctcttt gcggccgagg
     1441 ccatcgccct taaccgccag ctgtctcagc atgaggagaa tgaactggcg aaggagtcag
     1501 aggcgctggc cgagggcctc tgctccgtga ggctttcccc tccctccaag tcacgcctgg
     1561 cccgccggag ggcgctgacc caggcaggcc gcagtggaga cacgcaactg aacccaacac
     1621 ccacagcgct ctgtcccact ccgggcccca ggcccggccc cactggaaac ctgtgagggg
     1681 cctgctctgc agctccatcc aggccttttc atccacaaag gctctcatcc tcctttcccc
     1741 agagtcctca aggaaaaagc tttttcctaa ggggttgtct ttgaaaggca aactatcact
     1801 tgtcactttg cataattgcc tgcggcaggg acatctcttt actgggctcc tgcccacctg
     1861 ctcacccgcc tgcggatcga ggatccagcc tgctctcacc ggctggggct gcggccttca
     1921 gggagccagc cttgagaagc gtcagttgac agaggctctt ccctctctct gcactgtcac
     1981 ccccctctgg cggtccttcc accttcctct gtcctccgga cgtcctcccc cttggctgag
     2041 ggaagccatc ccctcgattc agggaagggc agggagcctt ctgcattcag gaggccagat
     2101 ccgtcttcca gtcgatagct cagagaagca cataatcttt ctttgccatg accaaaatgt
     2161 gtccgtcatt tatcatcctc tacctggttt gggattgctg ctgaagtcag tattatttcg
     2221 tgttttacaa tatttggcat tttttctaac cgtgctcttc cgacaaagat gagactttaa
     2281 actcccactg tgagcccatg gactttccag agctcttagg gttcactttt ctctcctgaa
     2341 cttccatgca tttggaaggt tttaatgagc tatttcctat tactctaact ggttttaagc
     2401 tgttcagatg atgagtgact cagagaccag tgtgtctgct gctaccttcc tcgagcctgg
     2461 tgtggagggc agcgcaggtc cggggcactg aggagctctg tgcctgatgt ggagccagtc
     2521 cggaggctgc ccagccaccc tggtctgagc cgtgtggtgc cttctgctgg ggagctgata
     2581 gctgagcatc agtggagctg cttagttatc taagaaaatc ggtttgcata tgtcacatgt
     2641 tttgacaaca caaggatgct attatgcatt gtgcttattt taataaaact gttttaaatt
     2701 cta
//
LOCUS       XM_032610902            2576 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X11, mRNA.
ACCESSION   XM_032610902
VERSION     XM_032610902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2576
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 7 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742916"
     CDS             304..1278
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X6"
                     /protein_id="XP_032466793.1"
                     /db_xref="GeneID:116742916"
                     /translation="MGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKLTSELLG
                     EGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFF
                     EDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLK
                     PENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVF
                     TDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQ
                     EGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGK"
     misc_feature    403..1269
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(430..444,454..456,493..495,499..501,589..591,
                     637..648,658..660,664..666,772..777,781..783,787..792,
                     796..798,835..840,847..849,913..927,931..933)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(430..441,454..456,493..495,499..501,589..591,
                     637..648,658..660,787..792,796..798,835..840)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(442..444,658..660,664..666,772..777,781..783,
                     787..789,847..849,913..927,931..933)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    835..927
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1057..1059,1069..1071,1093..1095,1102..1104)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 ctcctcccta cacgccatcg ggcccacccc tcggagctag tatatcttct tccgtgttct
       61 tggctgagcg agcaggtggc tggtgtgcgc gacaggcctt gccgggagtc agctgagatt
      121 ttcatgccgg gtataatgaa gcagaggcca atggaaaact gaagaatgtc tgctatgtac
      181 agaggccatt gaaacacttc ctgcaactgg aagacagcag ccccctgaca ggagcattat
      241 tgcatttgga atttcaaggt tacagagagg gtctgcttcg caaagttggg cagacctata
      301 gagatgggca gcagtgaacc tgttcccatt gcagaaagtg acaagaggaa gaagaagaag
      361 cggaaggccc gggccactga ctccttgcca ggaaagtttg aagatacgta caaactgacc
      421 tctgagctgc ttggagaggg agcctatgcc aaagttcaag gtgccgtgag cctgcagaat
      481 ggcaaggagt atgctgtcaa aatcattgaa aaacatgcag gacacagtcg gagtagggta
      541 tttcgggagg tggagacgct gtatcagtgt caaggaaaca agaacatttt ggagctgatt
      601 gagttctttg aagacgacac aaggttttac ttggtctttg agaaattgca aggaggctcc
      661 atcctgaccc acatccagaa gcagaagcaa ttcaacgagc gagaagccag ccgagtggtg
      721 caggatgttg ccgcagccct tgacttcctg cacaccaaag gcattgctca ccgcgatctg
      781 aagccagaaa atatattgtg tgaatctcca gaaaaggtgt ctccggtgaa aatctgtgac
      841 tttgacttgg gcagtggggt gaaactgaac aactcctgca cccccataac cacaccagag
      901 ctgaccactc catgtggctc tgcagaatat atggcccctg aggtggtaga agtcttcacg
      961 gataaggcca ctttttacga caagcgctgt gacctgtgga gcctgggtgt ggtcctctac
     1021 atcatgctga gtggctaccc gccctttgtg ggtcactgcg gagccgactg tggctgggac
     1081 cggggagagg tctgcacagt gtgccagaac aagctgtttg agagcatcca ggaaggcaag
     1141 tatgagtttc ctgacaagga ctgggctcat atctccaacg aggccaaaga cctcatctcc
     1201 aagctcctgg ttcgagacgt gaaacagaga ctgagtgccg cccaagttct gcagcacccg
     1261 tgggtgcagg ggaaatagca gcacaatgga cctgacgctc tttgcggccg aggccatcgc
     1321 ccttaaccgc cagctgtctc agcatgagga gaatgaactg gcgaaggagt cagaggcgct
     1381 ggccgagggc ctctgctccg tgaggctttc ccctccctcc aagtcacgcc tggcccgccg
     1441 gagggcgctg acccaggcag gccgcagtgg agacacgcaa ctgaacccaa cacccacagc
     1501 gctctgtccc actccgggcc ccaggcccgg ccccactgga aacctgtgag gggcctgctc
     1561 tgcagctcca tccaggcctt ttcatccaca aaggctctca tcctcctttc cccagagtcc
     1621 tcaaggaaaa agctttttcc taaggggttg tctttgaaag gcaaactatc acttgtcact
     1681 ttgcataatt gcctgcggca gggacatctc tttactgggc tcctgcccac ctgctcaccc
     1741 gcctgcggat cgaggatcca gcctgctctc accggctggg gctgcggcct tcagggagcc
     1801 agccttgaga agcgtcagtt gacagaggct cttccctctc tctgcactgt cacccccctc
     1861 tggcggtcct tccaccttcc tctgtcctcc ggacgtcctc ccccttggct gagggaagcc
     1921 atcccctcga ttcagggaag ggcagggagc cttctgcatt caggaggcca gatccgtctt
     1981 ccagtcgata gctcagagaa gcacataatc tttctttgcc atgaccaaaa tgtgtccgtc
     2041 atttatcatc ctctacctgg tttgggattg ctgctgaagt cagtattatt tcgtgtttta
     2101 caatatttgg cattttttct aaccgtgctc ttccgacaaa gatgagactt taaactccca
     2161 ctgtgagccc atggactttc cagagctctt agggttcact tttctctcct gaacttccat
     2221 gcatttggaa ggttttaatg agctatttcc tattactcta actggtttta agctgttcag
     2281 atgatgagtg actcagagac cagtgtgtct gctgctacct tcctcgagcc tggtgtggag
     2341 ggcagcgcag gtccggggca ctgaggagct ctgtgcctga tgtggagcca gtccggaggc
     2401 tgcccagcca ccctggtctg agccgtgtgg tgccttctgc tggggagctg atagctgagc
     2461 atcagtggag ctgcttagtt atctaagaaa atcggtttgc atatgtcaca tgttttgaca
     2521 acacaaggat gctattatgc attgtgctta ttttaataaa actgttttaa attcta
//
LOCUS       XM_032610905            2704 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAPK interacting serine/threonine kinase
            1 (MKNK1), transcript variant X12, mRNA.
ACCESSION   XM_032610905
VERSION     XM_032610905.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2704
                     /gene="MKNK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 7 long SRA reads, 6
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116742916"
     CDS             432..1406
                     /gene="MKNK1"
                     /codon_start=1
                     /product="MAP kinase-interacting serine/threonine-protein
                     kinase 1 isoform X6"
                     /protein_id="XP_032466796.1"
                     /db_xref="GeneID:116742916"
                     /translation="MGSSEPVPIAESDKRKKKKRKARATDSLPGKFEDTYKLTSELLG
                     EGAYAKVQGAVSLQNGKEYAVKIIEKHAGHSRSRVFREVETLYQCQGNKNILELIEFF
                     EDDTRFYLVFEKLQGGSILTHIQKQKQFNEREASRVVQDVAAALDFLHTKGIAHRDLK
                     PENILCESPEKVSPVKICDFDLGSGVKLNNSCTPITTPELTTPCGSAEYMAPEVVEVF
                     TDKATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCTVCQNKLFESIQ
                     EGKYEFPDKDWAHISNEAKDLISKLLVRDVKQRLSAAQVLQHPWVQGK"
     misc_feature    531..1397
                     /gene="MKNK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Mitogen-activated protein kinase signal-integrating kinase
                     1; Region: STKc_Mnk1; cd14174"
                     /db_xref="CDD:271076"
     misc_feature    order(558..572,582..584,621..623,627..629,717..719,
                     765..776,786..788,792..794,900..905,909..911,915..920,
                     924..926,963..968,975..977,1041..1055,1059..1061)
                     /gene="MKNK1"
                     /note="active site"
                     /db_xref="CDD:271076"
     misc_feature    order(558..569,582..584,621..623,627..629,717..719,
                     765..776,786..788,915..920,924..926,963..968)
                     /gene="MKNK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    order(570..572,786..788,792..794,900..905,909..911,
                     915..917,975..977,1041..1055,1059..1061)
                     /gene="MKNK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:271076"
     misc_feature    963..1055
                     /gene="MKNK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:271076"
     misc_feature    order(1185..1187,1197..1199,1221..1223,1230..1232)
                     /gene="MKNK1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:271076"
ORIGIN      
        1 gacgggcgag aggaccggcg cggccggcga cgagcaaaag gaggggaccg cctgctgggg
       61 atgtgacctc gcggccagag tggactcgcg ctagcccacc cggcggaccc cgaaaatttg
      121 aaatacagcc ataccccatt ttattgcact tcacaattat cgcgtctttt acaatttgaa
      181 ggtttgtgcc aaccccgcct tgtcagatga tggttaacat tttttagcaa tatttttaaa
      241 ttaagatttt catgccgggt ataatgaagc agaggccaat ggaaaactga agaatgtctg
      301 ctatgtacag aggccattga aacacttcct gcaactggaa gacagcagcc ccctgacagg
      361 agcattattg catttggaat ttcaaggtta cagagagggt ctgcttcgca aagttgggca
      421 gacctataga gatgggcagc agtgaacctg ttcccattgc agaaagtgac aagaggaaga
      481 agaagaagcg gaaggcccgg gccactgact ccttgccagg aaagtttgaa gatacgtaca
      541 aactgacctc tgagctgctt ggagagggag cctatgccaa agttcaaggt gccgtgagcc
      601 tgcagaatgg caaggagtat gctgtcaaaa tcattgaaaa acatgcagga cacagtcgga
      661 gtagggtatt tcgggaggtg gagacgctgt atcagtgtca aggaaacaag aacattttgg
      721 agctgattga gttctttgaa gacgacacaa ggttttactt ggtctttgag aaattgcaag
      781 gaggctccat cctgacccac atccagaagc agaagcaatt caacgagcga gaagccagcc
      841 gagtggtgca ggatgttgcc gcagcccttg acttcctgca caccaaaggc attgctcacc
      901 gcgatctgaa gccagaaaat atattgtgtg aatctccaga aaaggtgtct ccggtgaaaa
      961 tctgtgactt tgacttgggc agtggggtga aactgaacaa ctcctgcacc cccataacca
     1021 caccagagct gaccactcca tgtggctctg cagaatatat ggcccctgag gtggtagaag
     1081 tcttcacgga taaggccact ttttacgaca agcgctgtga cctgtggagc ctgggtgtgg
     1141 tcctctacat catgctgagt ggctacccgc cctttgtggg tcactgcgga gccgactgtg
     1201 gctgggaccg gggagaggtc tgcacagtgt gccagaacaa gctgtttgag agcatccagg
     1261 aaggcaagta tgagtttcct gacaaggact gggctcatat ctccaacgag gccaaagacc
     1321 tcatctccaa gctcctggtt cgagacgtga aacagagact gagtgccgcc caagttctgc
     1381 agcacccgtg ggtgcagggg aaatagcagc acaatggacc tgacgctctt tgcggccgag
     1441 gccatcgccc ttaaccgcca gctgtctcag catgaggaga atgaactggc gaaggagtca
     1501 gaggcgctgg ccgagggcct ctgctccgtg aggctttccc ctccctccaa gtcacgcctg
     1561 gcccgccgga gggcgctgac ccaggcaggc cgcagtggag acacgcaact gaacccaaca
     1621 cccacagcgc tctgtcccac tccgggcccc aggcccggcc ccactggaaa cctgtgaggg
     1681 gcctgctctg cagctccatc caggcctttt catccacaaa ggctctcatc ctcctttccc
     1741 cagagtcctc aaggaaaaag ctttttccta aggggttgtc tttgaaaggc aaactatcac
     1801 ttgtcacttt gcataattgc ctgcggcagg gacatctctt tactgggctc ctgcccacct
     1861 gctcacccgc ctgcggatcg aggatccagc ctgctctcac cggctggggc tgcggccttc
     1921 agggagccag ccttgagaag cgtcagttga cagaggctct tccctctctc tgcactgtca
     1981 cccccctctg gcggtccttc caccttcctc tgtcctccgg acgtcctccc ccttggctga
     2041 gggaagccat cccctcgatt cagggaaggg cagggagcct tctgcattca ggaggccaga
     2101 tccgtcttcc agtcgatagc tcagagaagc acataatctt tctttgccat gaccaaaatg
     2161 tgtccgtcat ttatcatcct ctacctggtt tgggattgct gctgaagtca gtattatttc
     2221 gtgttttaca atatttggca ttttttctaa ccgtgctctt ccgacaaaga tgagacttta
     2281 aactcccact gtgagcccat ggactttcca gagctcttag ggttcacttt tctctcctga
     2341 acttccatgc atttggaagg ttttaatgag ctatttccta ttactctaac tggttttaag
     2401 ctgttcagat gatgagtgac tcagagacca gtgtgtctgc tgctaccttc ctcgagcctg
     2461 gtgtggaggg cagcgcaggt ccggggcact gaggagctct gtgcctgatg tggagccagt
     2521 ccggaggctg cccagccacc ctggtctgag ccgtgtggtg ccttctgctg gggagctgat
     2581 agctgagcat cagtggagct gcttagttat ctaagaaaat cggtttgcat atgtcacatg
     2641 ttttgacaac acaaggatgc tattatgcat tgtgcttatt ttaataaaac tgttttaaat
     2701 tcta
//
LOCUS       XM_032610913            6060 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MOB kinase activator 3C (MOB3C),
            transcript variant X1, mRNA.
ACCESSION   XM_032610913
VERSION     XM_032610913.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6060
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6060
                     /gene="MOB3C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742977"
     CDS             3536..4228
                     /gene="MOB3C"
                     /codon_start=1
                     /product="MOB kinase activator 3C isoform X1"
                     /protein_id="XP_032466804.1"
                     /db_xref="GeneID:116742977"
                     /translation="MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDL
                     RSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQD
                     ERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFR
                     VFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIQGDDRADLSLSPDLDLVAHQMDHLN
                     TEWPGRGPSEVW"
     misc_feature    3638..4117
                     /gene="MOB3C"
                     /note="Mob1/phocein family; Region: Mob1_phocein;
                     pfam03637"
                     /db_xref="CDD:461000"
ORIGIN      
        1 ccccgtgagt gagtgcccct cgcgcgccgc cgcgcacacg gcccagcctc atttccactt
       61 tcatttctcc ggccgtcctg gcgtggcacc gtcccgaggc gacctgtgcc cgagcaggct
      121 ggccacagcc ctcgatccgt gtccgaagtt ctgagctgga aagtcggggc tggggttgag
      181 gcgagtcggt tgaggagggc gtgtcttcgg aggcggaaat ttcaggcctg ctcctctggg
      241 tcctacgacc cgtctgtcct ggcggctggg ctggggaggc aggggcgtca ggggtcctgg
      301 gagaggccga ggagtggtcg taggtggcca agcgccgcgg ggaagagctg ggagtcctcg
      361 cctctacttt tctcttggat ctctgccctc agccctcccg cctgccccca cccccaacac
      421 accaacacac acaccacaca cacacacaca cacacacaca cacaccacac actcacacac
      481 caacacacgc acacaacaca cacgccaaca cacacacaac acacatacac cccacacaca
      541 caccacacac acattaacac acacacacca acacacacac acacacacac acacacaccc
      601 gcactactct aggctggatt ctggtttcag accggggcca agatcctggg tcaggcctgg
      661 gggagtggca ggtgtggctg agcatcagaa gcaggcaggg cccctctgta gtcttcattt
      721 gggaaaccca gatgctcacc cggggagcga gccatcacta gccactttag gagtgaaagg
      781 acatccagag ttaggaaact ggggccaaga gagggaatgg ccatggttcg gaagttcagg
      841 gaggggacag agattctgtg agagttagaa actcagtaaa gggatgggag tgggaagtga
      901 agacagacaa gtggcacgga tacaagggca tctatccatc cccccacccc caagctttca
      961 ttttcctggg gaaagacccg ggccttgaaa ttctgcagca ggaaggtggg actctagctc
     1021 actggttagg acaccaaagt tgctgtgggg tgtggggaag gcttggtgtg ctgggggaac
     1081 aggaattagg ttggtctagt tgatgggaag atgcttcccc tttccctcca ctcccctcct
     1141 ttccccttat ctccaccaga ccagcgacca ggcagtgcag gaaaatagcc ctttactagt
     1201 tgtcatgccc caccttatcc cagtgtccag ttctgccatt ggagatcccc tgcctataac
     1261 ttgctgtgtg aatgcagtct cctcaagtcc ccttactggg cctcagtttc cccatccata
     1321 caagaagtgg gttgggccag ttgatttctc agggctattt caatcctatg attcttgatt
     1381 ttgagctttc cttaaagcct gagcatccgc tatgtgtctg gccctgacca aggctggggg
     1441 gtggggctgg tgggggacca aatggccaaa gagtaatctc cacctaagga caaagagatc
     1501 tgggctcagt agaggggctg tgggaggagg tagcattcaa cctgacagtg tgagtcaagc
     1561 caagggacca gtgtaagaaa acacacagaa gcaggagttg ggggcatgtt cagggatcag
     1621 gaagaagccc agggtagttt ctgtagggaa gtgaggcagg aaagctaggg tgaggtgttg
     1681 aatgccaggg tgagggtctg ttagtagctg tcactgaggg gggctgtgca aaggtggaga
     1741 gcccagggac ccaacctaat tgcagtgtga atgattttgg aagctcctgc cccaagcaga
     1801 gtttagaatg caggctgcaa ttcaagcatg gaaatctcct cttggatcag gaagtcccac
     1861 actgggaact tctttgggtg agaagttgag gggtagggga tggatgacct gccacatctt
     1921 tgaggttttt tcaagaggac aagatcctgc tgggagacct gcccctactc tccaaactcc
     1981 tctcacttta cttgacttcc ccttcatggc ctgtgtgttg tgtgttttag acttctccac
     2041 tagcttgact tgtctgacat gatgacccac atgtaccttt ggttacaccc aattgtcacc
     2101 ttgttcccac ccccccttcc ccaaacctgt cccagtattt ctagagatgt gagaaaggaa
     2161 aatactccag tgtcagctct gaggtcaagg ccaggctttg tggctgtatt caagcctcag
     2221 tctagggtta gagtccagga cttaaattga ccagggtcag tgccaggtca tagttcagcc
     2281 tgcagccaaa aagctcagtg tttagcctac acttagcctt agtgctcagt ctggggtcag
     2341 gatcagtgct cgcgtggcta attccagtgg gtacttggct ctgcatttcc caagagctca
     2401 cacacacagg ggagatgagg tgactaccct ggaagtccca ggaacttagc ctgtgactga
     2461 cggaggaagt tgcatggccc aatccatgcc tgctgtaggg gtcacccagc agtggtggat
     2521 gaaactagaa cccaggtctc cagcctcaaa gcctggggct cttatcaccg tccccaaagt
     2581 ctgttcggag actgagatcc ttcaattcta agaggcaaag caaatccttc tgaattctgg
     2641 atgggcccag gtgggtgatt tgactgcatt ttcctacctt ccagggccag gcacatagta
     2701 tgtgctgtag gaatgtctac tgaatgtcag gtgcagtggg aggggccgcc ggctgttctg
     2761 gtttgtgttt caggctggag gaggctagct tgggaggaag gatctccagc ctgtgctgga
     2821 ggaagtggtg cccttctaga cctgccacct ccccctccct ccagtgcctg cagccacact
     2881 cagaggccac ccagctggcc atacgagagc tctttccttt cagggtaata aaaggaaagt
     2941 acatttttgg tagaaaagtc ccttgtgctc cctgggaatc cccggtggcc ggatggactg
     3001 tgggatatct cagaggaagc cgagggcggg ggctctcccc ctagccccag gacaatgcag
     3061 gccggctctc ccacgcttta ccaactagcc catgggatct ccagaggtca tcttgtccag
     3121 gcccctgcct cctgcagggg cctctgcctg caggaagcct ctgccagctc tctaatggtt
     3181 cacagcaagt ctgaggagca cctgtctgga gcccaggccc agccctctct gagacacaat
     3241 gaaagtggag aggaaactag acaagatggg agggctgtgg acgcttggca gggggagcta
     3301 gggtatctgg aaatagggca ggatgctgga ctgtgggatg aggaggattt agattccagg
     3361 cagagaattc caggccaaaa gctgagaggt gggagggaaa tgatgtgttg ggaagtcaag
     3421 cccaagtcag gtcctttggt aaggacctga ctaccatgct cccccatgcc cttgaccctg
     3481 gcagggcatc cgcagggcct gcccctggac cccaagccct tggcctatcc tggccatggc
     3541 gctgtgcctg aagcaggtgt tcgctaaaga caagacgttc aggccgcgga agcgcttcga
     3601 gccgggcaca cagcgctttg agctgtataa gaaggcgcag gcgtcgctca agtcgggtct
     3661 ggacctgcgc agtgtggtga ggctgccacc gggcgagaac atcgacgact ggattgccgt
     3721 gcatgtggtg gacttcttca accgcatcaa cctcatctac ggcaccatgg ccgagcgctg
     3781 cagcgagacc agctgcccgg tcatggccgg cggaccccgc tacgagtacc gctggcagga
     3841 cgagcgccag taccggcggc cggccaagct ctcggcgcct cgctacatgg cgttgctcat
     3901 ggactggatt gagggcctca tcaacgacga ggatgtcttt cccacgcgcg tgggagttcc
     3961 cttccccaag aacttccagc aggtctgcac caagatcctg acccgcctct tccgcgtctt
     4021 tgtgcatgtc tacatccacc acttcgacag cattctcagc atgggggccg aggcgcacgt
     4081 caacacctgt tacaagcact tctattactt catccaggga gatgacagag cggatctgtc
     4141 actgagccca gacctggacc ttgttgccca tcagatggac catctgaaca cagagtggcc
     4201 agggagggga ccctcagaag tctggtagca gagggacctg aaggcccttg ggcccctcca
     4261 cacacccaaa gcccctggac ttctggttct caggagtctg cccacatgtc cccctgactg
     4321 tttgtgagtg gagtagggaa gagcttaaag gtgggcagac aggtaaaaag gagcagctaa
     4381 acccttagca tgaagtctag tctgctctga cacttgaccc ttccacggtg gttgccaagc
     4441 ctgtttgggg aacgtggatg tggctgaagt gacggcaaga aagatgcaag agcgtgagca
     4501 gcctatgagt gagtggacac ggatgacatg tgtatatcgg tgtgtacgtg tatgattttg
     4561 actgtggggt gtgtctgtga gagctacgtg ccttagactg ttcctggcac atagtaggcc
     4621 ctccataaat gttaggtaaa ttgatggatg gatggaaggg aaggaaggaa ggaagtaggg
     4681 attagggcca tcggaccatg accacttagg aatgatgacg agtcagcctc cccatttggt
     4741 gtgtctgact atgtgtgtaa gtgcacgaac tgtggtggta gatgtagctc catgtttgaa
     4801 tcttccaggc taccatcttc catcagcatg agttctgggg agctactgat ggggggaggt
     4861 aggaaggggg gccctgccct gactaaaatc ctggcccacc gtaagttctg atttgctcag
     4921 ctagagatgc ccaggagctg tcatttccct catccctctg cctccagaag gcctgattat
     4981 agatagcctc atgggcgtca ggggcgattc ttcatgtcca caaagatccc cagtccttaa
     5041 atcaggaatc atacactcca atctagcttc ctgaatctcc agatgtggtt gtgaggatct
     5101 gaagcccagc acaagataat cctccaaccc acaaagctag tgagcttgaa ttgggaagct
     5161 ccggagcctt atctcccgcc tgggacattg aggaccacat agctgtgaat ggactcttcc
     5221 aggcttagag agcccccatc ctgcaagtac ctgcctcctt cccaaccatc cctgaaatat
     5281 tccagctggt tggatctcag agcatagctg tccacagaga aactggccat gcccagccct
     5341 gcgcccagac ccacaggtgg ggaaactgag gcagggacaa ggccctcctc tcctggagac
     5401 tccaggctgg ggggccagga tggagagcca gaaggaatct gaggatcatc cagtctcact
     5461 cagaatcatc cacgtacatg ggaggaaact gaagccagag gagaggcggg agaagctgtc
     5521 caaggcctcc cagcaaagct tttgtggagc tggagtggaa accaggggtt ctgactccca
     5581 cccctggcct gtggattgct acacagggag atgagatgca ctccaaagga gggtttgaca
     5641 gctcctctcc aggatacaac tgttcctgct ttgagcaagg atttctagcc tgatgccaga
     5701 gtaccccacc acccctgtgg tctgctgggc ttgtctgctg agccaaaact ccaaaatcat
     5761 gcccctgtcc atggccccgc agctgccaga tctctgggga agcagatggg gctcctcggt
     5821 ccagccagct ggacctggga cagctgcctc cagagaagtt cccgagggaa gcactggccc
     5881 agcagctttg ccagaagctc tggtgtgagg ggggcagtgg ggggtggtgt caaaggttct
     5941 gccaaggagg actgtgggtt ggaagatgga gtctaggcta tggccagtac tgatcatgcg
     6001 gcagggggcg ggggatgtat ttttttgtga aacagaggga aattttattg ctgttatttt
//
LOCUS       XM_032610923            2711 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MOB kinase activator 3C (MOB3C),
            transcript variant X2, mRNA.
ACCESSION   XM_032610923
VERSION     XM_032610923.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2711
                     /gene="MOB3C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116742977"
     CDS             187..879
                     /gene="MOB3C"
                     /codon_start=1
                     /product="MOB kinase activator 3C isoform X1"
                     /protein_id="XP_032466814.1"
                     /db_xref="GeneID:116742977"
                     /translation="MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDL
                     RSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQD
                     ERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFR
                     VFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIQGDDRADLSLSPDLDLVAHQMDHLN
                     TEWPGRGPSEVW"
     misc_feature    289..768
                     /gene="MOB3C"
                     /note="Mob1/phocein family; Region: Mob1_phocein;
                     pfam03637"
                     /db_xref="CDD:461000"
ORIGIN      
        1 cgacgcgggc tcggcaggca gacgggcgag aggaccggcg cggccggcga cgagcaaaag
       61 gaggggaccg cctgctgggg atgtgacctc gcggccagag tggactcgcg ctagcccacc
      121 cggcggaccc cgtgaggcat ccgcagggcc tgcccctgga ccccaagccc ttggcctatc
      181 ctggccatgg cgctgtgcct gaagcaggtg ttcgctaaag acaagacgtt caggccgcgg
      241 aagcgcttcg agccgggcac acagcgcttt gagctgtata agaaggcgca ggcgtcgctc
      301 aagtcgggtc tggacctgcg cagtgtggtg aggctgccac cgggcgagaa catcgacgac
      361 tggattgccg tgcatgtggt ggacttcttc aaccgcatca acctcatcta cggcaccatg
      421 gccgagcgct gcagcgagac cagctgcccg gtcatggccg gcggaccccg ctacgagtac
      481 cgctggcagg acgagcgcca gtaccggcgg ccggccaagc tctcggcgcc tcgctacatg
      541 gcgttgctca tggactggat tgagggcctc atcaacgacg aggatgtctt tcccacgcgc
      601 gtgggagttc ccttccccaa gaacttccag caggtctgca ccaagatcct gacccgcctc
      661 ttccgcgtct ttgtgcatgt ctacatccac cacttcgaca gcattctcag catgggggcc
      721 gaggcgcacg tcaacacctg ttacaagcac ttctattact tcatccaggg agatgacaga
      781 gcggatctgt cactgagccc agacctggac cttgttgccc atcagatgga ccatctgaac
      841 acagagtggc cagggagggg accctcagaa gtctggtagc agagggacct gaaggccctt
      901 gggcccctcc acacacccaa agcccctgga cttctggttc tcaggagtct gcccacatgt
      961 ccccctgact gtttgtgagt ggagtaggga agagcttaaa ggtgggcaga caggtaaaaa
     1021 ggagcagcta aacccttagc atgaagtcta gtctgctctg acacttgacc cttccacggt
     1081 ggttgccaag cctgtttggg gaacgtggat gtggctgaag tgacggcaag aaagatgcaa
     1141 gagcgtgagc agcctatgag tgagtggaca cggatgacat gtgtatatcg gtgtgtacgt
     1201 gtatgatttt gactgtgggg tgtgtctgtg agagctacgt gccttagact gttcctggca
     1261 catagtaggc cctccataaa tgttaggtaa attgatggat ggatggaagg gaaggaagga
     1321 aggaagtagg gattagggcc atcggaccat gaccacttag gaatgatgac gagtcagcct
     1381 ccccatttgg tgtgtctgac tatgtgtgta agtgcacgaa ctgtggtggt agatgtagct
     1441 ccatgtttga atcttccagg ctaccatctt ccatcagcat gagttctggg gagctactga
     1501 tggggggagg taggaagggg ggccctgccc tgactaaaat cctggcccac cgtaagttct
     1561 gatttgctca gctagagatg cccaggagct gtcatttccc tcatccctct gcctccagaa
     1621 ggcctgatta tagatagcct catgggcgtc aggggcgatt cttcatgtcc acaaagatcc
     1681 ccagtcctta aatcaggaat catacactcc aatctagctt cctgaatctc cagatgtggt
     1741 tgtgaggatc tgaagcccag cacaagataa tcctccaacc cacaaagcta gtgagcttga
     1801 attgggaagc tccggagcct tatctcccgc ctgggacatt gaggaccaca tagctgtgaa
     1861 tggactcttc caggcttaga gagcccccat cctgcaagta cctgcctcct tcccaaccat
     1921 ccctgaaata ttccagctgg ttggatctca gagcatagct gtccacagag aaactggcca
     1981 tgcccagccc tgcgcccaga cccacaggtg gggaaactga ggcagggaca aggccctcct
     2041 ctcctggaga ctccaggctg gggggccagg atggagagcc agaaggaatc tgaggatcat
     2101 ccagtctcac tcagaatcat ccacgtacat gggaggaaac tgaagccaga ggagaggcgg
     2161 gagaagctgt ccaaggcctc ccagcaaagc ttttgtggag ctggagtgga aaccaggggt
     2221 tctgactccc acccctggcc tgtggattgc tacacaggga gatgagatgc actccaaagg
     2281 agggtttgac agctcctctc caggatacaa ctgttcctgc tttgagcaag gatttctagc
     2341 ctgatgccag agtaccccac cacccctgtg gtctgctggg cttgtctgct gagccaaaac
     2401 tccaaaatca tgcccctgtc catggccccg cagctgccag atctctgggg aagcagatgg
     2461 ggctcctcgg tccagccagc tggacctggg acagctgcct ccagagaagt tcccgaggga
     2521 agcactggcc cagcagcttt gccagaagct ctggtgtgag gggggcagtg gggggtggtg
     2581 tcaaaggttc tgccaaggag gactgtgggt tggaagatgg agtctaggct atggccagta
     2641 ctgatcatgc ggcagggggc gggggatgta tttttttgtg aaacagaggg aaattttatt
     2701 gctgttattt t
//
LOCUS       XM_032610933            2772 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MOB kinase activator 3C (MOB3C),
            transcript variant X3, mRNA.
ACCESSION   XM_032610933
VERSION     XM_032610933.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2772
                     /gene="MOB3C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 15 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742977"
     CDS             185..835
                     /gene="MOB3C"
                     /codon_start=1
                     /product="MOB kinase activator 3C isoform X2"
                     /protein_id="XP_032466824.1"
                     /db_xref="GeneID:116742977"
                     /translation="MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDL
                     RSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQD
                     ERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFR
                     VFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREMTERICH"
     misc_feature    287..805
                     /gene="MOB3C"
                     /note="Mob1/phocein family; Region: Mob1_phocein;
                     pfam03637"
                     /db_xref="CDD:461000"
ORIGIN      
        1 ggcgacgcgg gctcggcagg cagacgggcg agaggaccgg cgcggccggc gacgagcaaa
       61 aggaggggac cgcctgctgg ggatgtgacc tcgcggccag agtggactcg cgctagccca
      121 cccggcggac cccggcatcc gcagggcctg cccctggacc ccaagccctt ggcctatcct
      181 ggccatggcg ctgtgcctga agcaggtgtt cgctaaagac aagacgttca ggccgcggaa
      241 gcgcttcgag ccgggcacac agcgctttga gctgtataag aaggcgcagg cgtcgctcaa
      301 gtcgggtctg gacctgcgca gtgtggtgag gctgccaccg ggcgagaaca tcgacgactg
      361 gattgccgtg catgtggtgg acttcttcaa ccgcatcaac ctcatctacg gcaccatggc
      421 cgagcgctgc agcgagacca gctgcccggt catggccggc ggaccccgct acgagtaccg
      481 ctggcaggac gagcgccagt accggcggcc ggccaagctc tcggcgcctc gctacatggc
      541 gttgctcatg gactggattg agggcctcat caacgacgag gatgtctttc ccacgcgcgt
      601 gggagttccc ttccccaaga acttccagca ggtctgcacc aagatcctga cccgcctctt
      661 ccgcgtcttt gtgcatgtct acatccacca cttcgacagc attctcagca tgggggccga
      721 ggcgcacgtc aacacctgtt acaagcactt ctattacttc atccgtgagt tcagcctggt
      781 ggaccagcgg gagctggagc cactgaggga gatgacagag cggatctgtc actgagccca
      841 gacctggacc ttgttgccca tcagatggac catctgaaca cagagtggcc agggagggga
      901 ccctcagaag tctggtagca gagggacctg aaggcccttg ggcccctcca cacacccaaa
      961 gcccctggac ttctggttct caggagtctg cccacatgtc cccctgactg tttgtgagtg
     1021 gagtagggaa gagcttaaag gtgggcagac aggtaaaaag gagcagctaa acccttagca
     1081 tgaagtctag tctgctctga cacttgaccc ttccacggtg gttgccaagc ctgtttgggg
     1141 aacgtggatg tggctgaagt gacggcaaga aagatgcaag agcgtgagca gcctatgagt
     1201 gagtggacac ggatgacatg tgtatatcgg tgtgtacgtg tatgattttg actgtggggt
     1261 gtgtctgtga gagctacgtg ccttagactg ttcctggcac atagtaggcc ctccataaat
     1321 gttaggtaaa ttgatggatg gatggaaggg aaggaaggaa ggaagtaggg attagggcca
     1381 tcggaccatg accacttagg aatgatgacg agtcagcctc cccatttggt gtgtctgact
     1441 atgtgtgtaa gtgcacgaac tgtggtggta gatgtagctc catgtttgaa tcttccaggc
     1501 taccatcttc catcagcatg agttctgggg agctactgat ggggggaggt aggaaggggg
     1561 gccctgccct gactaaaatc ctggcccacc gtaagttctg atttgctcag ctagagatgc
     1621 ccaggagctg tcatttccct catccctctg cctccagaag gcctgattat agatagcctc
     1681 atgggcgtca ggggcgattc ttcatgtcca caaagatccc cagtccttaa atcaggaatc
     1741 atacactcca atctagcttc ctgaatctcc agatgtggtt gtgaggatct gaagcccagc
     1801 acaagataat cctccaaccc acaaagctag tgagcttgaa ttgggaagct ccggagcctt
     1861 atctcccgcc tgggacattg aggaccacat agctgtgaat ggactcttcc aggcttagag
     1921 agcccccatc ctgcaagtac ctgcctcctt cccaaccatc cctgaaatat tccagctggt
     1981 tggatctcag agcatagctg tccacagaga aactggccat gcccagccct gcgcccagac
     2041 ccacaggtgg ggaaactgag gcagggacaa ggccctcctc tcctggagac tccaggctgg
     2101 ggggccagga tggagagcca gaaggaatct gaggatcatc cagtctcact cagaatcatc
     2161 cacgtacatg ggaggaaact gaagccagag gagaggcggg agaagctgtc caaggcctcc
     2221 cagcaaagct tttgtggagc tggagtggaa accaggggtt ctgactccca cccctggcct
     2281 gtggattgct acacagggag atgagatgca ctccaaagga gggtttgaca gctcctctcc
     2341 aggatacaac tgttcctgct ttgagcaagg atttctagcc tgatgccaga gtaccccacc
     2401 acccctgtgg tctgctgggc ttgtctgctg agccaaaact ccaaaatcat gcccctgtcc
     2461 atggccccgc agctgccaga tctctgggga agcagatggg gctcctcggt ccagccagct
     2521 ggacctggga cagctgcctc cagagaagtt cccgagggaa gcactggccc agcagctttg
     2581 ccagaagctc tggtgtgagg ggggcagtgg ggggtggtgt caaaggttct gccaaggagg
     2641 actgtgggtt ggaagatgga gtctaggcta tggccagtac tgatcatgcg gcagggggcg
     2701 ggggatgtat ttttttgtga aacagaggga aattttattg ctgttatttt tggtaaaata
     2761 aaggaggcaa ac
//
LOCUS       XM_032610942             534 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 275 (TMEM275),
            mRNA.
ACCESSION   XM_032610942
VERSION     XM_032610942.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..534
                     /gene="TMEM275"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:116742989"
     CDS             1..534
                     /gene="TMEM275"
                     /codon_start=1
                     /product="transmembrane protein 275"
                     /protein_id="XP_032466833.1"
                     /db_xref="GeneID:116742989"
                     /translation="MPPPEKSQGPPARAPAGRAQGRLPGPPSPALFCACGLCVLLAGV
                     NVTLVGAFASFVPGHNAPLILGPALLVLALGFFAACCVCSRRRGPAPRSRSKAAAGPC
                     QGGGGGRVALEMESSERTAQDTTAVQISPAPSAASSGRSSPSPGPFALDAPAPAALYA
                     PRADGVRLDLPREGVAP"
ORIGIN      
        1 atgccgcccc cggagaagag ccagggcccc ccggcccgag cgcccgcggg ccgtgctcaa
       61 ggccggctgc ccggcccgcc gtccccggcg ctgttctgcg cctgcggcct gtgcgtgctg
      121 ctggcgggcg tgaacgtgac gctggtgggc gccttcgctt ccttcgtccc ggggcacaac
      181 gcgccgctca tcttggggcc ggcgctgctc gtgctggcgc tcggcttctt cgcggcctgc
      241 tgcgtgtgta gccgccgccg cgggcccgcg ccccgttcgc gctcgaaggc ggccgcgggt
      301 ccctgccagg gcgggggcgg cgggcgggtg gcgctggaga tggagagcag cgagcgcacg
      361 gcgcaggaca ccacggccgt gcagatcagc cccgccccct cggccgcgtc gtccggccgc
      421 tcaagcccca gccccggccc cttcgccctg gatgcccccg cgcccgcagc cctctacgcg
      481 ccgcgcgccg atggggtccg gctcgacctg ccccgggagg gcgtcgcccc ctag
//
LOCUS       XM_032610954            2491 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinocilin (KNCN), mRNA.
ACCESSION   XM_032610954
VERSION     XM_032610954.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2491
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2491
                     /gene="KNCN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116742992"
     CDS             172..546
                     /gene="KNCN"
                     /codon_start=1
                     /product="kinocilin"
                     /protein_id="XP_032466845.1"
                     /db_xref="GeneID:116742992"
                     /translation="MDIPISSRDFRCLQLACVALGLVAGSIIIGVSVSKAAAAVGGIF
                     IGAAAVGLLILAYPFLKARFNLDHILPTIGSLRIHPQPGPDHGEGRSSANGNKEGARS
                     SLSTVSRTLEKLKPGGRGAGEG"
     misc_feature    172..540
                     /gene="KNCN"
                     /note="Kinocilin protein; Region: Kinocilin; pfam15033"
                     /db_xref="CDD:464458"
ORIGIN      
        1 gatagggttg cagataaagc caagggttac cagcccagaa tcttactgcc cagaaactcc
       61 ctccctaaaa gtggagctcc agcaaggaga catccaagag gactgagacc tccagggctc
      121 ttcaggggaa aaggctccgc tggctggaga ctgtgccccg ggtgggcctg catggacatc
      181 cccatcagca gcagagactt ccgctgcctg cagctggcct gcgtggccct cggcctggtg
      241 gccggcagca tcatcattgg tgtgtccgtg tccaaagctg cagctgccgt gggtggaatc
      301 tttattggtg ccgctgctgt ggggctcctt atcttggcct accccttcct gaaggctcgg
      361 ttcaacctgg accacatcct gcctacgata gggagcctaa ggatccaccc ccagccaggg
      421 ccagaccacg gggaaggaag atccagcgcc aatggtaata aagaaggagc ccgcagcagc
      481 ctgtccaccg tgagcagaac cctggagaag ctgaagccag ggggccgggg ggctggggag
      541 ggctgaggca ggggctgacg ggctgccccc tgcactgccc tctcttccca cccgctaccc
      601 caatctcaga gcctgcccgg gtccaaacca gagatgaacc aggtcctgaa gatgccagac
      661 ctgctttcac caaggccatt ggaaatggat tccctgtagt ggggtggggc caggaccacg
      721 gtgtctctgg tttcaggctc ttgacctgga tttttctctc tgaactgcag cttggctttc
      781 ttcccttttt gatcaactgt ctggatcctc tggaatttgg ggcccagtga taccccagtc
      841 tcttgctcca gcctggccag ggaagtgaac cgcaggctca caggaaccac accgggtctg
      901 ggcctggccc tgggcctcag gagctcactg gctgcataga gggcctggac cagactcccc
      961 tgaatatcaa aagctccagg cagctcctca ggaacgggcc ctgagcagca gtgaaccaga
     1021 cagcggcata gcctagaaaa acaaaatggt cgccgccttg acaggagccc aggtgatgca
     1081 cgggcatgga ggcttccagg aggaggtgtc tcctgagctg agccctgtgc tgagactctt
     1141 ggggtttgac tccactattt aaggcttttc atgatctgac tgcaaacaag acctccagcc
     1201 ttcctcttct ccccaccctc tcactgctcc tgaaccatcg aaacacattc cagctcccaa
     1261 gccttggcct gtgttctcct ggatgccccc cgctctgctc ccctctgcct atcaaatccc
     1321 ccatccttaa aggcctcctt ccaagtgtcc ccttaaccac aatgccctcc tcatcctctt
     1381 ccaccagcct ctgtctccct ctctagacac cctccaggca ggttgaagtc ttctttttca
     1441 caaaacagtt actaatcctg tttaaaccta ctgtctattg cccttttcca gttaccatca
     1501 tggtgcacag taagtgctca ataaatgtta aatggcttaa atttagtgga aaaacaattc
     1561 cctaggcttt cctgggagag ccacttcagg gctccacatg tgtacagggt ttggagccag
     1621 gctgtacagg aaacattgct cctccctcca cgccactcct catacacctg cgacctcagg
     1681 gggaagcaca gttgtatgac ctctgtggag acatcttctc catgtggcct ctgtcctggt
     1741 tggtgagcaa aagacaagct aggaagagtc tcattcttca agaatcagtg cagatgacac
     1801 ctcttcttgg aagcctcccc tgacttctct gtgctcccac agccccaggg ctcccctcca
     1861 tcacagcccc cagcactctg agtggcctct atttccccct cacgagagtg ggggcgctga
     1921 gggccaggca cgtggaaggt atccagtgga tgttggaaaa ccacaccaaa agcaggagac
     1981 agcactccat tgtacagatg ggaaagctga ggccctgcaa gaaaaggact catcaagtcc
     2041 catggtgaga gattgtccca aacctggaat ccaggcctct tctctctccc cacccacagc
     2101 tctaccctct gctgtcctct acacgggccc cagggaccaa ctccttgacc acagtgggac
     2161 agacctccat ggatagaaca aatttcacaa atgctgctgg gctggggaga acttgtgttc
     2221 ctccagcccg agggaagtca gtgtccccct ccttgcattt ccctcccgcc tgctccctct
     2281 cccttctcct tttcctcaac atcatcgtca tcaacaataa ctcgggcctg gtttccttga
     2341 tcagtaagga aatgcttcct ccggtccatc ttcatgctca ccagcagcac cccaaagaga
     2401 tgcctagggg tggatggggt ggaagtgggg aaggggtgcc tgagctgtag ggattgtggt
     2461 cccccccctc acccaccatc aacccttccc a
//
LOCUS       XM_032610968            2232 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cystathionine gamma-lyase (CTH),
            transcript variant X1, mRNA.
ACCESSION   XM_032610968
VERSION     XM_032610968.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2232
                     /gene="CTH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116742995"
     CDS             159..1424
                     /gene="CTH"
                     /codon_start=1
                     /product="cystathionine gamma-lyase isoform X1"
                     /protein_id="XP_032466859.1"
                     /db_xref="GeneID:116742995"
                     /translation="MQEKDASPHGFLPRFQHFATQAIHVGQEPEQWTSQAVVPPISLS
                     TTFKQGAPGRHLGFEYSRSGNPTRNCLEKAVAALDGAKYSLAFASGLAATVTVTHLLK
                     AGDQIICMDDVYGGTNRYFRQVATEFGLKISFVDCSKTKLLEEAITPETKLVWIETPT
                     NPILKMIDIEACAHTVHKHGDIILVVDNTFMSAYFQRPLALGADICMYSATKYMNGHS
                     DVVMGLVSLNSERLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLQIRMEKHFENGMEV
                     AQFLESNPWVEKVIYPGLPSHPQHELAKRQCTGCPGMITFYIKGSLQHAETFLKNLKL
                     FTLAESLGGYESLAEHPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDDLDQ
                     ALKAAVSFICVCVCVCVCVCVCARACAHA"
     misc_feature    213..1295
                     /gene="CTH"
                     /note="Cys/Met metabolism PLP-dependent enzyme; Region:
                     Cys_Met_Meta_PP; pfam01053"
                     /db_xref="CDD:395837"
     misc_feature    order(285..296,300..305,336..338,342..344,420..425,
                     429..434,498..500,513..515,522..524,789..791,813..815,
                     819..821,870..872,900..902,906..911,1146..1148)
                     /gene="CTH"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99738"
     misc_feature    order(423..431,498..500,627..629,717..719,783..785,
                     789..794,819..821)
                     /gene="CTH"
                     /note="substrate-cofactor binding pocket [active]"
                     /db_xref="CDD:99738"
     misc_feature    order(423..431,498..500,717..719,726..728,783..785,
                     789..794)
                     /gene="CTH"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99738"
     misc_feature    792..794
                     /gene="CTH"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99738"
ORIGIN      
        1 tacagtccgg cttttgtgcg ctcgccgctg gtcaccctgc tgggcatacc tttacctctt
       61 tcgcctaatt cttcggtgtc tttttcaagc cccgactcac cagtttcata gttttatctt
      121 ccttgccctt taactctcac cttccttcgc agatcagcat gcaggaaaaa gacgcttccc
      181 cacacggttt cctgcctagg ttccaacatt tcgctacgca ggccatccat gtgggccagg
      241 aaccagagca atggacttcc caggctgtag tgcctcccat ctcactgtcc accacgttca
      301 agcaaggggc tcctggccgg cacttgggtt ttgagtacag ccgttctgga aatcccacca
      361 ggaattgctt ggaaaaagca gtggcagcac tggatggggc taagtacagt ttggcctttg
      421 cttcaggttt agcagccact gtgactgtta cccatctctt aaaagcagga gaccaaatta
      481 tttgtatgga tgatgtgtat ggaggtacaa acaggtactt caggcaggtg gcaactgaat
      541 ttggattaaa gatttctttt gttgattgtt caaaaaccaa attgttagag gaagctatta
      601 ctccagaaac caagcttgtt tggattgaaa ctcccacaaa ccctatcttg aagatgattg
      661 acattgaagc ctgtgcacat actgtccata aacatggaga cattattttg gtcgtggata
      721 acacttttat gtcggcatat ttccagcggc ctttggctct gggagctgat atttgtatgt
      781 attcagcaac aaaatatatg aatggccaca gtgatgttgt gatgggctta gtgtcactta
      841 attctgagag gcttcataat aggctccgat tcttgcaaaa ttctcttgga gcagttccat
      901 ctcctattga ctgttacctc tgcaatcgag gtctgaagac tctacaaatc cgcatggaga
      961 agcatttcga aaatggaatg gaagttgctc agtttttgga gtcgaatcct tgggtagaaa
     1021 aggttattta tcccggactg ccctctcatc ctcagcatga gctggcaaag cgtcagtgca
     1081 caggttgccc agggatgatc accttttata tcaagggctc ccttcaacat gctgagactt
     1141 tcctcaagaa cctaaagcta tttacgctgg ctgagagctt aggaggatat gaaagtcttg
     1201 ctgagcatcc ggcaatcatg acccatgctt cagtgcctaa gagcgacaga gaagtccttg
     1261 gaattagtga cacactgatt cgactctctg tgggcttaga ggataaacaa gacctactgg
     1321 atgatctaga tcaagctttg aaggcagcag taagttttat ttgtgtgtgt gtgtgtgtgt
     1381 gtgtgtgtgt gtgtgtgtgt gcgcgcgcat gcgcgcacgc ttaatcttgg gagcggcggg
     1441 tcactatgtt tatagagtgg cctcactatg tttatagagt ggactgtaaa cgttttctct
     1501 tttcttatta caatatacag ggtgtataaa tgtataggga aatcagtcga aatgcagatt
     1561 taaaagaatg tagtcttcag aaaagaattc ttggaggagg tgaagtcttt gcctgaaggt
     1621 ttaataacat atttttcttg tgcactgtta acacagcact ctccaaatgc aagtcacaac
     1681 tagcattcca gaactgctat tagaggttgc ttcctgcaaa aagatcaaaa cttctgaata
     1741 gttgaatgga ccattaatga gcctttgcag agttttcaag tgaaaatttt aagggacttt
     1801 attacctttc acaactgtaa tcttcctggt atcattcctg ttaaaaagtt tcctctttcc
     1861 cttattgtaa ttgacaagtc aattctgtta agatcttttt gttaatttgg atatacattt
     1921 gcctctgaag gaggtgagat ttgtgctgct attggggatt gtgttctttt tttcaagctt
     1981 aagatttata ttgatcatgt ttacaatcta atggcatttc atttttcatg ttttctgagg
     2041 aatttaaatt attaaatgaa tgttcttaaa tcaagggtga ttttgtatat tgttgaaaac
     2101 agcactcaaa gcaatggttt acacttaatt accataagcc aaaaatcaaa tatctgaaaa
     2161 gtctgtgaaa ttttactgat ttaaggttgt acttactatt tttttaaaaa ataaatctta
     2221 ttatcaaatg ta
//
LOCUS       XM_032610977            1936 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cystathionine gamma-lyase (CTH),
            transcript variant X2, mRNA.
ACCESSION   XM_032610977
VERSION     XM_032610977.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1936
                     /gene="CTH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116742995"
     CDS             170..1387
                     /gene="CTH"
                     /codon_start=1
                     /product="cystathionine gamma-lyase isoform X2"
                     /protein_id="XP_032466868.1"
                     /db_xref="GeneID:116742995"
                     /translation="MQEKDASPHGFLPRFQHFATQAIHVGQEPEQWTSQAVVPPISLS
                     TTFKQGAPGRHLGFEYSRSGNPTRNCLEKAVAALDGAKYSLAFASGLAATVTVTHLLK
                     AGDQIICMDDVYGGTNRYFRQVATEFGLKISFVDCSKTKLLEEAITPETKLVWIETPT
                     NPILKMIDIEACAHTVHKHGDIILVVDNTFMSAYFQRPLALGADICMYSATKYMNGHS
                     DVVMGLVSLNSERLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLQIRMEKHFENGMEV
                     AQFLESNPWVEKVIYPGLPSHPQHELAKRQCTGCPGMITFYIKGSLQHAETFLKNLKL
                     FTLAESLGGYESLAEHPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDDLDQ
                     ALKAAHSPNASHN"
     misc_feature    224..1306
                     /gene="CTH"
                     /note="Cys/Met metabolism PLP-dependent enzyme; Region:
                     Cys_Met_Meta_PP; pfam01053"
                     /db_xref="CDD:395837"
     misc_feature    order(296..307,311..316,347..349,353..355,431..436,
                     440..445,509..511,524..526,533..535,800..802,824..826,
                     830..832,881..883,911..913,917..922,1157..1159)
                     /gene="CTH"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99738"
     misc_feature    order(434..442,509..511,638..640,728..730,794..796,
                     800..805,830..832)
                     /gene="CTH"
                     /note="substrate-cofactor binding pocket [active]"
                     /db_xref="CDD:99738"
     misc_feature    order(434..442,509..511,728..730,737..739,794..796,
                     800..805)
                     /gene="CTH"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99738"
     misc_feature    803..805
                     /gene="CTH"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99738"
ORIGIN      
        1 agagtctcag ctacagtccg gcttttgtgc gctcgccgct ggtcaccctg ctgggcatac
       61 ctttacctct ttcgcctaat tcttcggtgt ctttttcaag ccccgactca ccagtttcat
      121 agttttatct tccttgccct ttaactctca ccttccttcg cagatcagca tgcaggaaaa
      181 agacgcttcc ccacacggtt tcctgcctag gttccaacat ttcgctacgc aggccatcca
      241 tgtgggccag gaaccagagc aatggacttc ccaggctgta gtgcctccca tctcactgtc
      301 caccacgttc aagcaagggg ctcctggccg gcacttgggt tttgagtaca gccgttctgg
      361 aaatcccacc aggaattgct tggaaaaagc agtggcagca ctggatgggg ctaagtacag
      421 tttggccttt gcttcaggtt tagcagccac tgtgactgtt acccatctct taaaagcagg
      481 agaccaaatt atttgtatgg atgatgtgta tggaggtaca aacaggtact tcaggcaggt
      541 ggcaactgaa tttggattaa agatttcttt tgttgattgt tcaaaaacca aattgttaga
      601 ggaagctatt actccagaaa ccaagcttgt ttggattgaa actcccacaa accctatctt
      661 gaagatgatt gacattgaag cctgtgcaca tactgtccat aaacatggag acattatttt
      721 ggtcgtggat aacactttta tgtcggcata tttccagcgg cctttggctc tgggagctga
      781 tatttgtatg tattcagcaa caaaatatat gaatggccac agtgatgttg tgatgggctt
      841 agtgtcactt aattctgaga ggcttcataa taggctccga ttcttgcaaa attctcttgg
      901 agcagttcca tctcctattg actgttacct ctgcaatcga ggtctgaaga ctctacaaat
      961 ccgcatggag aagcatttcg aaaatggaat ggaagttgct cagtttttgg agtcgaatcc
     1021 ttgggtagaa aaggttattt atcccggact gccctctcat cctcagcatg agctggcaaa
     1081 gcgtcagtgc acaggttgcc cagggatgat caccttttat atcaagggct cccttcaaca
     1141 tgctgagact ttcctcaaga acctaaagct atttacgctg gctgagagct taggaggata
     1201 tgaaagtctt gctgagcatc cggcaatcat gacccatgct tcagtgccta agagcgacag
     1261 agaagtcctt ggaattagtg acacactgat tcgactctct gtgggcttag aggataaaca
     1321 agacctactg gatgatctag atcaagcttt gaaggcagca cactctccaa atgcaagtca
     1381 caactagcat tccagaactg ctattagagg ttgcttcctg caaaaagatc aaaacttctg
     1441 aatagttgaa tggaccatta atgagccttt gcagagtttt caagtgaaaa ttttaaggga
     1501 ctttattacc tttcacaact gtaatcttcc tggtatcatt cctgttaaaa agtttcctct
     1561 ttcccttatt gtaattgaca agtcaattct gttaagatct ttttgttaat ttggatatac
     1621 atttgcctct gaaggaggtg agatttgtgc tgctattggg gattgtgttc tttttttcaa
     1681 gcttaagatt tatattgatc atgtttacaa tctaatggca tttcattttt catgttttct
     1741 gaggaattta aattattaaa tgaatgttct taaatcaagg gtgattttgt atattgttga
     1801 aaacagcact caaagcaatg gtttacactt aattaccata agccaaaaat caaatatctg
     1861 aaaagtctgt gaaattttac tgatttaagg ttgtacttac tattttttta aaaaataaat
     1921 cttattatca aatgta
//
LOCUS       XR_004346649            2710 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cystathionine gamma-lyase (CTH),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004346649
VERSION     XR_004346649.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2710
                     /gene="CTH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116742995"
     misc_RNA        1..2710
                     /gene="CTH"
                     /product="cystathionine gamma-lyase, transcript variant
                     X3"
                     /db_xref="GeneID:116742995"
ORIGIN      
        1 tacagtccgg cttttgtgcg ctcgccgctg gtcaccctgc tgggcatacc tttacctctt
       61 tcgcctaatt cttcggtgtc tttttcaagc cccgactcac cagtttcata gttttatctt
      121 ccttgccctt taactctcac cttccttcgc agatcagcat gcaggaaaaa gacgcttccc
      181 cacacggttt cctgcctagg ttccaacatt tcgctacgca ggccatccat gtgggccagg
      241 aaccagagca atggacttcc caggctgtag tgcctcccat ctcactgtcc accacgttca
      301 agcaaggggc tcctggccgg cacttgggtt ttgagtacag ccgttctgga aatcccacca
      361 ggaattgctt ggaaaaagca gtggcagcac tggatggggc taagtacagt ttggcctttg
      421 cttcaggttt agcagccact gtgactgtta cccatctctt aaaagcagga gaccaaatta
      481 tttgtatgga tgatgtgtat ggaggtacaa acaggtactt caggcaggtg gcaactgaat
      541 ttggattaaa gatttctttt gttgattgtt caaaaaccaa attgttagag gaagctatta
      601 ctccagaaac caagcttgtt tggattgaaa ctcccacaaa ccctatcttg aagatgattg
      661 acattgaagc ctgtgcacat actgtccata aacatggaga cattattttg gtcgtggata
      721 acacttttat gtcggcatat ttccagcggc ctttggctct gggagctgat atttgtatgt
      781 attcagcaac aaaatatatg aatggccaca gtgatgttgt gatgggctta gtgtcactta
      841 attctgagag gcttcataat aggctccgat tcttgcaaaa ttctcttgga gcagttccat
      901 ctcctattga ctgttacctc tgcaatcgag gtctgaagac tctacaaatc cgcatggaga
      961 agcatttcga aaatggaatg gaagttgctc agtttttgga gtcgaatcct tgggtagaaa
     1021 aggttattta tcccggactg ccctctcatc ctcagcatga gctggcaaag cgtcagtgca
     1081 caggttgccc agggatgatc accttttata tcaagggctc ccttcaacat gctgagactt
     1141 tcctcaagaa cctaaagcta tttacgctgg ctgagagctt aggaggatat gaaagtcttg
     1201 ctgagcatcc agcctgaacc atagtaggtg gtctaccctt acccatgctg acaatgacga
     1261 tgagttgcta cgtgatcttg aacatcctct gaggactctg tgtcatgagt tatgtgttgg
     1321 aattaattcc taatgcttag tgattgctac cagtgatcgt aggttgtctt tccctgatct
     1381 gcctcagaag gtccagttct ggattgatcc tttgatccag atggaattaa ttctgaccag
     1441 ctcttgatcc aagaggcctc ttataagtgc agctggttgg tcatggggtg tatgacttct
     1501 ggccaaggcc tcattcaggt tggtgttaaa atccacacac tggaggctat gtcttcccct
     1561 cctgcatggg ggtgtttgac tggcaccttc agtgtccgat tgagtatacc ttactgatgg
     1621 tatgaaaaca ataaaagatc tttgtgttca tttaaaatca tgactagaaa tgataatttg
     1681 cacaattcct taattttttg cctgcgaaac attgtaggtg tatgaagcat ttgactggca
     1741 ccttcagtgt ccgattgagt ataccttact gatggtatga aaacaataaa agatctttgt
     1801 gttcatttaa aatcatgact agaaatgata atttgcacaa ttccttaatt ttttgcctgc
     1861 aaaacattgt aggtgtatga agcatttgat attgagagta gaaaaatttt gaaaatagtt
     1921 gcaatttatg agatagaaac atgcatcccc ctgctacaat atagtgatca aaattttgct
     1981 cattcttcct ttcagggcaa tcatgaccca tgcttcagtg cctaagagcg acagagaagt
     2041 ccttggaatt agtgacacac tgattcgact ctctgtgggc ttagaggata aacaagacct
     2101 actggatgat ctagatcaag ctttgaaggc agcacactct ccaaatgcaa gtcacaacta
     2161 gcattccaga actgctatta gaggttgctt cctgcaaaaa gatcaaaact tctgaatagt
     2221 tgaatggacc attaatgagc ctttgcagag ttttcaagtg aaaattttaa gggactttat
     2281 tacctttcac aactgtaatc ttcctggtat cattcctgtt aaaaagtttc ctctttccct
     2341 tattgtaatt gacaagtcaa ttctgttaag atctttttgt taatttggat atacatttgc
     2401 ctctgaagga ggtgagattt gtgctgctat tggggattgt gttctttttt tcaagcttaa
     2461 gatttatatt gatcatgttt acaatctaat ggcatttcat ttttcatgtt ttctgaggaa
     2521 tttaaattat taaatgaatg ttcttaaatc aagggtgatt ttgtatattg ttgaaaacag
     2581 cactcaaagc aatggtttac acttaattac cataagccaa aaatcaaata tctgaaaagt
     2641 ctgtgaaatt ttactgattt aaggttgtac ttactatttt tttaaaaaat aaatcttatt
     2701 atcaaatgta
//
LOCUS       XM_032611007             522 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nuclear ribonucleoprotein
            polypeptide E (SNRPE), mRNA.
ACCESSION   XM_032611007
VERSION     XM_032611007.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..522
                     /gene="SNRPE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743009"
     CDS             65..343
                     /gene="SNRPE"
                     /codon_start=1
                     /product="small nuclear ribonucleoprotein E"
                     /protein_id="XP_032466898.1"
                     /db_xref="GeneID:116743009"
                     /translation="MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIE
                     GCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN"
     misc_feature    95..331
                     /gene="SNRPE"
                     /note="Sm protein E; Region: Sm_E; cd01718"
                     /db_xref="CDD:212465"
     misc_feature    order(134..136,170..172,176..178,185..187,206..217,
                     227..229,251..253,278..280,284..286,290..304,311..331)
                     /gene="SNRPE"
                     /note="heptamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212465"
     misc_feature    order(161..181,185..223,227..241)
                     /gene="SNRPE"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212465"
     misc_feature    order(215..217,221..229,302..304,308..310)
                     /gene="SNRPE"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:212465"
     misc_feature    290..325
                     /gene="SNRPE"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212465"
ORIGIN      
        1 tttattccgg aagttgcttt ttgaggtagt gtgcgggata gtgtggtctt tgtgcgcttc
       61 caccatggcg taccggggcc agggccagaa ggtgcagaag gtgatggtgc agccaatcaa
      121 tctcatcttc agatacttgc aaaatagatc tcggattcag gtgtggcttt atgagcaagt
      181 gaatatgcgg atagagggct gtattattgg ttttgatgag tatatgaacc tcgtattaga
      241 tgatgcagaa gagattcatt ctaaaacaaa gtcaagaaaa caactgggtc ggatcatgct
      301 aaaaggagat aacattactc tgctccaaag tgtctccaac tagaaatgat caatgaagtg
      361 aggaattgtt gagaaggcaa tacagttttt ttaggtgtgc tttgttagaa gtgtagttct
      421 aaagcattta ttcatattgt tttgctcacc tttatgttat taccagatga caataaatgc
      481 tgtgggattg tttttattaa aatatttaca ttgttttctt tt
//
LOCUS       XM_032611021            2482 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Smad nuclear interacting protein 1
            (SNIP1), mRNA.
ACCESSION   XM_032611021
VERSION     XM_032611021.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2482
                     /gene="SNIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743010"
     CDS             57..1241
                     /gene="SNIP1"
                     /codon_start=1
                     /product="smad nuclear-interacting protein 1"
                     /protein_id="XP_032466912.1"
                     /db_xref="GeneID:116743010"
                     /translation="MKEVKSERDRGSRRRHRDGDMVAAVVVKQERLSPESAPPVHRRP
                     DSSGGSPSPPAGESGRPSHRGNRARGGSRSPARKKNKSSGRRSKSPRSKRSRSPHHST
                     VKVKQEREDHPRRGREDRPHREPSGQEHRRARNSNRDRHRGHSHQRRSSGERPGSGQP
                     QGRDRDAQNLQAQEAEREFHNTRRREHRQKNEAGGNASQDSLPQPGPGSNNKDKEVPV
                     KEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQ
                     SAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNG
                     TFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEVDRKEDEDDEEEEEVS
                     DS"
     misc_feature    126..>710
                     /gene="SNIP1"
                     /note="transcription termination factor Rho; Provisional;
                     Region: PRK12678"
                     /db_xref="CDD:237171"
     misc_feature    720..1166
                     /gene="SNIP1"
                     /note="forkhead associated (FHA) domain found in Smad
                     nuclear-interacting protein 1 (SNIP1) and similar
                     proteins; Region: FHA_SNIP1; cd22718"
                     /db_xref="CDD:438770"
     misc_feature    order(744..746,831..839,936..938)
                     /gene="SNIP1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438770"
     misc_feature    order(900..908,948..953,957..959,1047..1049,1053..1058)
                     /gene="SNIP1"
                     /note="putative phosphopeptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438770"
ORIGIN      
        1 ttcggggaca ggagtgctac ggacatcttt ttcctgggct ccgcaggtct cttagtatga
       61 aggaggtgaa gagcgagcgg gatcggggga gccgacgaag gcaccgggac ggggacatgg
      121 tggcggcggt ggtggtgaag caggagcgcc tcagcccgga atccgcgcct cccgtgcacc
      181 gccgcccgga ctcctccggc ggtagcccgt ccccaccggc cggcgagtcg ggccgcccga
      241 gtcaccgcgg gaaccgagcc cgaggaggta gccggtctcc agccagaaag aaaaacaagt
      301 cctcagggag aagaagcaag tctccccgga gtaagagaag ccgaagtcct caccactcaa
      361 cggtcaaagt aaagcaggaa cgtgaggatc atccccggag aggccgggag gatcggccac
      421 accgagaacc ctcaggacag gaacacaggc gagctaggaa cagtaaccga gacagacacc
      481 gcggccactc ccaccagagg agaagctcgg gcgagaggcc tggcagcggg cagcctcagg
      541 gacgggatcg agatgcccag aacctacagg cgcaggaagc tgagcgggag tttcacaaca
      601 cccggcgccg ggagcaccgc cagaagaacg aagccggcgg taacgcatct caggactcac
      661 ttcctcagcc tggccctggc agcaacaaca aagacaaaga agtgcctgtt aaagaaaagc
      721 caagctttga actttctggg gcacttcttg aggacaccaa cacctttcgg ggtgtagtca
      781 ttaaatacag cgagcccccg gaagcacgta tccccaaaaa acggtggcgt ctctacccct
      841 ttaaaaatga tgaggtgctt ccagtgatgt acatccaccg acagagcgct tacctcctgg
      901 gccgacaccg ccgcatcgca gacattccca tcgatcaccc ctcctgttca aagcagcacg
      961 ccgtctttca gtaccggctc gtggaatata cccgtgctga tgggacagtt ggccgcaggg
     1021 tgaagcccta catcattgac cttggctcag gcaatggaac gttcctgaac aacaagcgaa
     1081 ttgagccaca gagatactac gaactgaagg aaaaggatgt ccttaaattt gggttcagca
     1141 gcagagagta tgttctgctc cacgagtcct cggacacatc tgaagtggac aggaaagaag
     1201 acgaggatga cgaggaggag gaggaggtat ctgacagcta gcagactgaa gcacaagcca
     1261 aactctcgag agaccttttc ttcctgcgaa agctttggga ttgactcagg gggcaccgcc
     1321 gtgctctctg taacgcctct tattgcctta agtctttctt ctgttgctga ccggcttacg
     1381 tttcagtgta agaaaactga cttatgtttg gttgaacttt tttctgtggc acatcagcca
     1441 catgcacatg ctgtgggcat ttgttttctg aacagtctca ccaacacatc gtgttttagt
     1501 agaagcatcg tggcttgagt tggtgctttc agaactactg tgcaggaaac tataaagccc
     1561 tggttgaagg ggattgtggc ttgctttctt tgtacagtta ctttatttat atcgttgtta
     1621 agctttgtgg accgggtttg tttttgtctt gggggcagac ccctgaacag agaatcttac
     1681 taagctttgg ttatcaccaa aacagcctcc cgagtatacc aaagctttga cctggttgag
     1741 ctcttgagtc acagaaattg attttgcact tcgttgtttg ggggtgggca gggggtgggg
     1801 gagatttacc acatgacctc attattgact gttggactta aacggatgct ttgtggagcc
     1861 tgcttaagct tatgactgta caggaaggtc atggccacta ccagtgggtg ctgattacat
     1921 gtcacgagag gctgaaatgg gtcgtggatc tgtttcctgt gagagaactc tgatttctcc
     1981 atggagcatg tacagaacaa ttttgatctt caactttgca tttttattta gaggttatct
     2041 ccattcttcc ttctttgaga aacacactgt catttgtgtg gcagggtcct tgctttattc
     2101 taacaacgtg tatgtgttgt gtggtttacg ttttcatctt tttaaaaaaa tgttcggaga
     2161 ggttgtattt acctgggcaa ttgggaatag cccagtttcc taattttcca ccagaggaat
     2221 atgtgtaagt agaaaagtca taactgctta catcgtgtgt gtgtgtgtgt gtgtgtgtgt
     2281 gtgtgtgagt gtgtgtgagt gtgtgtgtat gtatatattt aaaaaattgt gtgtgaaaga
     2341 gctgcatatt gattttccta tgagaatgtt ttgtgatgta aatgtaatac tgcattatag
     2401 gcaaaggcct ccctgcattt gaagagcagg ttttcattta tatgtatttt tggaataaaa
     2461 aataataaaa cttgtaaata ta
//
LOCUS       XM_032611034            2831 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X1, mRNA.
ACCESSION   XM_032611034
VERSION     XM_032611034.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2831
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 25 long SRA reads, and 93%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743015"
     CDS             166..1749
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X1"
                     /protein_id="XP_032466925.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKGTTPYVQ
                     AFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGSTGSG
                     RAGSAAMAHRPSHSAACGIFPDWGANPCPLHRQADPQPLRHQGSPNILNKLSDLLAPI
                     SEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTN
                     RVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELSGLPSGP
                     SAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSDDLKTHK
                     NPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQENVSNL
                     VIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVK
                     VQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNEFPVPEQ
                     FKTIWNGRKLVTTVTEIAG"
     misc_feature    178..348
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1273..1740
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 tctgggccgg cgtttcggcc ggcggttcat ttccggtggg ggtgccgcgc ccagtgaggg
       61 cacggaagtg ggtcgcgcga agattgctgg gcggttcttg ccggaagtgg agagcggctg
      121 atcgcagtcc cgaggtgagg cagatctctg agcaggtgct acattatggc tgacatgcaa
      181 aatctggtag aaaggttgga gagagcagtg ggccgcctgg aggcagtctc ccaggcctgt
      241 gacatgcact gtgggtatgc agacagtgct gcaaaaggaa cgactccata tgtgcaagca
      301 tttgactcac tcttggccgg tcctgtggca gagtacctca agatcagtaa agagattggg
      361 ggagatgtgc agaagcatgc ggagatggtc cacacgggtc tgaagttgga gcgagcgctc
      421 ttggttacag cctctcaatg ccagcagcca gcaggtagca caggctccgg acgtgcaggc
      481 tcagcggcca tggctcacag gcccagccac tccgcggcat gtgggatctt cccggactgg
      541 ggagcgaacc cgtgtcccct gcatcggcag gcggaccctc aaccactgcg ccaccaggga
      601 agcccaaaca ttttaaataa gctttccgat ttgttggcac ccatctccga gcagatccaa
      661 gaagtgataa cctttcggga gaagaacaga ggcagcaagt tgttcaatca tctgtcaggt
      721 gtcagcgaaa gtatccaggc cctgggctgg gtggctatgg ctcccaagcc tggtccctat
      781 gtgaaggaaa tgaatgatgc tgccatgttt tatacaaacc gagttctcaa ggagtacaaa
      841 gatgtggata agaagcatgt ggactgggtc aaagcttact tgagtatatg gacagagctg
      901 caggcttaca ttaaggagtt ccatgccact ggcctggcct ggagcaaaac ggggcctgtg
      961 gcaaaagaac tgagtggatt gccatcggga ccctctgctg gatcgggtcc tcctcccccc
     1021 ccaccaggcc cacctccccc tccagccgcc accagttcag gctcagatga gtctgcttca
     1081 cgctcagcac tgtttgcaca gattaatcag ggggagagca tcacacatgc cctgaaacat
     1141 gtatctgatg acttgaagac tcacaagaac cctgccttga aggctcagag tgctccagta
     1201 cgaagtggcc ccaaaccatt ctctgcatct aaaccaggag tcagtccttc ccccaaacca
     1261 gtcacaaaga aggagccagc tctacttgaa ctggagggca agaagtggag agtggaaaat
     1321 caggagaatg tttccaacct ggtgatagat gacacagagc tgaaacaggt ggcttacata
     1381 ttcaagtgtg tcaactcaac attgcaaatc aagggcaaaa ttaactccat tacagtagat
     1441 aactgtaaga aactcggtct ggtgttcgat gacgtggtgg gcattgtgga gataatcaat
     1501 agtagggatg tcaaagttca ggtaatgggt aaagtgccaa ccatttccat caacaaaaca
     1561 gatggctgcc acgtttacct gagcaagaat tcactggatt gtgagatagt cagtgccaaa
     1621 tcttctgaga tgaatgtcct cattcctaca gaaggcgatg acttcaatga gttcccagtc
     1681 cctgagcagt tcaagaccat atggaatggg cggaagttgg tcaccacagt gacagaaatt
     1741 gctggataag cgaagtgcca ctgggttctt tgccctctcc ctcacaccgt gggataaatc
     1801 tgtatcaaga cggttctttt ttagatttcc tctacctttc tgctcttaaa ctgcttctct
     1861 gctttgagaa gcacagctac ctgccttcac tgaaatatac ctcaggctga gatttggggt
     1921 gggatagcag gtctttgatc ttctgcagga aggtgcagct tttccgtgtc agctcaacca
     1981 tacagccagt ccattcttca ggaactgcac atcaggacag gtgtgtttta gctttcagcc
     2041 tttggggtta tttggggaag gataaagcag tccccaggaa ttaacagatc acaatgttca
     2101 cacaagttaa tctttttcta acaatgagtg tgaaggtagc agaagctggt gtgatcctag
     2161 ttggttcttc taacttaaac taattttcac tattgacaag tgaggcaagg gtttgcacgg
     2221 gaccaaaggc tgaagcttgg ccatctagca ttccaagcaa aatgatttcc tgtaagcatt
     2281 ccttttcttc tgcattccat cctgcatctg cccgaacctg agatagtagg ttgtcctgtg
     2341 ttagctgctg tggtggtgcc ctgcacccag gccagctaaa ggagtcttgg acccttcctc
     2401 tctctggggc ccctgcccag caccttccta cagagatgac ttaaaaagag aggaaaaaaa
     2461 aaggaaaacc acaccattcc caggaatctg gcttcccttc ctccttccat gctgggtgcc
     2521 catcatccgt cttcattgct tccttgccct gtcatgctca acagcttttg gcttctgtca
     2581 gggcacctgc acagaggact aaaatctcca ttgcaggctg gttttaggtc ttgtgtaaaa
     2641 atcttgcaca gcattgctaa tgtaaatttc agtttttcct ctaggacaaa cactttacca
     2701 aaatatgcaa ctttttttgg tgggaagaga gattgtcctg tgatttctac ccatttcctg
     2761 aggcctgcgg aaatgaacct ttatgtactt aaagttatac agaaaataga ataaaattaa
     2821 taccaaactt g
//
LOCUS       XM_032611042            2726 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X2, mRNA.
ACCESSION   XM_032611042
VERSION     XM_032611042.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2726
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 30 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             217..1644
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032466933.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    229..402
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1168..1635
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 gagtaggggg cggagttaag agcggagcag ccagacttct tccccggtcc ctcctctggg
       61 ccggcgtttc ggccggcggt tcatttccgg tgggggtgcc gcgcccagtg agggcacgga
      121 agtgggtcgc gcgaagattg ctgggcggtt cttgccggaa gtggagagcg gctgatcgca
      181 gtcccgaggt gaggcagatc tctgaggtgc tacattatgg ctgacatgca aaatctggta
      241 gaaaggttgg agagagcagt gggccgcctg gaggcagtct cccaggcctg tgacatgcac
      301 tgtgggtatg cagacagtgc tgcaaaagca ggaacgactc catatgtgca agcatttgac
      361 tcactcttgg ccggtcctgt ggcagagtac ctcaagatca gtaaagagat tgggggagat
      421 gtgcagaagc atgcggagat ggtccacacg ggtctgaagt tggagcgagc gctcttggtt
      481 acagcctctc aatgccagca gccagcaggt aataagcttt ccgatttgtt ggcacccatc
      541 tccgagcaga tccaagaagt gataaccttt cgggagaaga acagaggcag caagttgttc
      601 aatcatctgt caggtgtcag cgaaagtatc caggccctgg gctgggtggc tatggctccc
      661 aagcctggtc cctatgtgaa ggaaatgaat gatgctgcca tgttttatac aaaccgagtt
      721 ctcaaggagt acaaagatgt ggataagaag catgtggact gggtcaaagc ttacttgagt
      781 atatggacag agctgcaggc ttacattaag gagttccatg ccactggcct ggcctggagc
      841 aaaacggggc ctgtggcaaa agaactgagt ggattgccat cgggaccctc tgctggatcg
      901 ggtcctcctc cccccccacc aggcccacct ccccctccag ccgccaccag ttcaggctca
      961 gatgagtctg cttcacgctc agcactgttt gcacagatta atcaggggga gagcatcaca
     1021 catgccctga aacatgtatc tgatgacttg aagactcaca agaaccctgc cttgaaggct
     1081 cagagtgctc cagtacgaag tggccccaaa ccattctctg catctaaacc aggagtcagt
     1141 ccttccccca aaccagtcac aaagaaggag ccagctctac ttgaactgga gggcaagaag
     1201 tggagagtgg aaaatcagga gaatgtttcc aacctggtga tagatgacac agagctgaaa
     1261 caggtggctt acatattcaa gtgtgtcaac tcaacattgc aaatcaaggg caaaattaac
     1321 tccattacag tagataactg taagaaactc ggtctggtgt tcgatgacgt ggtgggcatt
     1381 gtggagataa tcaatagtag ggatgtcaaa gttcaggtaa tgggtaaagt gccaaccatt
     1441 tccatcaaca aaacagatgg ctgccacgtt tacctgagca agaattcact ggattgtgag
     1501 atagtcagtg ccaaatcttc tgagatgaat gtcctcattc ctacagaagg cgatgacttc
     1561 aatgagttcc cagtccctga gcagttcaag accatatgga atgggcggaa gttggtcacc
     1621 acagtgacag aaattgctgg ataagcgaag tgccactggg ttctttgccc tctccctcac
     1681 accgtgggat aaatctgtat caagacggtt cttttttaga tttcctctac ctttctgctc
     1741 ttaaactgct tctctgcttt gagaagcaca gctacctgcc ttcactgaaa tatacctcag
     1801 gctgagattt ggggtgggat agcaggtctt tgatcttctg caggaaggtg cagcttttcc
     1861 gtgtcagctc aaccatacag ccagtccatt cttcaggaac tgcacatcag gacaggtgtg
     1921 ttttagcttt cagcctttgg ggttatttgg ggaaggataa agcagtcccc aggaattaac
     1981 agatcacaat gttcacacaa gttaatcttt ttctaacaat gagtgtgaag gtagcagaag
     2041 ctggtgtgat cctagttggt tcttctaact taaactaatt ttcactattg acaagtgagg
     2101 caagggtttg cacgggacca aaggctgaag cttggccatc tagcattcca agcaaaatga
     2161 tttcctgtaa gcattccttt tcttctgcat tccatcctgc atctgcccga acctgagata
     2221 gtaggttgtc ctgtgttagc tgctgtggtg gtgccctgca cccaggccag ctaaaggagt
     2281 cttggaccct tcctctctct ggggcccctg cccagcacct tcctacagag atgacttaaa
     2341 aagagaggaa aaaaaaagga aaaccacacc attcccagga atctggcttc ccttcctcct
     2401 tccatgctgg gtgcccatca tccgtcttca ttgcttcctt gccctgtcat gctcaacagc
     2461 ttttggcttc tgtcagggca cctgcacaga ggactaaaat ctccattgca ggctggtttt
     2521 aggtcttgtg taaaaatctt gcacagcatt gctaatgtaa atttcagttt ttcctctagg
     2581 acaaacactt taccaaaata tgcaactttt tttggtggga agagagattg tcctgtgatt
     2641 tctacccatt tcctgaggcc tgcggaaatg aacctttatg tacttaaagt tatacagaaa
     2701 atagaataaa attaatacca aacttg
//
LOCUS       XM_032611049            2672 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X3, mRNA.
ACCESSION   XM_032611049
VERSION     XM_032611049.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2672
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 26 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             163..1590
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032466940.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    175..348
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1114..1581
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 gggccggcgt ttcggccggc ggttcatttc cggtgggggt gccgcgccca gtgagggcac
       61 ggaagtgggt cgcgcgaaga ttgctgggcg gttcttgccg gaagtggaga gcggctgatc
      121 gcagtcccga ggtgaggcag atctctgagc aggtgctaca ttatggctga catgcaaaat
      181 ctggtagaaa ggttggagag agcagtgggc cgcctggagg cagtctccca ggcctgtgac
      241 atgcactgtg ggtatgcaga cagtgctgca aaagcaggaa cgactccata tgtgcaagca
      301 tttgactcac tcttggccgg tcctgtggca gagtacctca agatcagtaa agagattggg
      361 ggagatgtgc agaagcatgc ggagatggtc cacacgggtc tgaagttgga gcgagcgctc
      421 ttggttacag cctctcaatg ccagcagcca gcaggtaata agctttccga tttgttggca
      481 cccatctccg agcagatcca agaagtgata acctttcggg agaagaacag aggcagcaag
      541 ttgttcaatc atctgtcagg tgtcagcgaa agtatccagg ccctgggctg ggtggctatg
      601 gctcccaagc ctggtcccta tgtgaaggaa atgaatgatg ctgccatgtt ttatacaaac
      661 cgagttctca aggagtacaa agatgtggat aagaagcatg tggactgggt caaagcttac
      721 ttgagtatat ggacagagct gcaggcttac attaaggagt tccatgccac tggcctggcc
      781 tggagcaaaa cggggcctgt ggcaaaagaa ctgagtggat tgccatcggg accctctgct
      841 ggatcgggtc ctcctccccc cccaccaggc ccacctcccc ctccagccgc caccagttca
      901 ggctcagatg agtctgcttc acgctcagca ctgtttgcac agattaatca gggggagagc
      961 atcacacatg ccctgaaaca tgtatctgat gacttgaaga ctcacaagaa ccctgccttg
     1021 aaggctcaga gtgctccagt acgaagtggc cccaaaccat tctctgcatc taaaccagga
     1081 gtcagtcctt cccccaaacc agtcacaaag aaggagccag ctctacttga actggagggc
     1141 aagaagtgga gagtggaaaa tcaggagaat gtttccaacc tggtgataga tgacacagag
     1201 ctgaaacagg tggcttacat attcaagtgt gtcaactcaa cattgcaaat caagggcaaa
     1261 attaactcca ttacagtaga taactgtaag aaactcggtc tggtgttcga tgacgtggtg
     1321 ggcattgtgg agataatcaa tagtagggat gtcaaagttc aggtaatggg taaagtgcca
     1381 accatttcca tcaacaaaac agatggctgc cacgtttacc tgagcaagaa ttcactggat
     1441 tgtgagatag tcagtgccaa atcttctgag atgaatgtcc tcattcctac agaaggcgat
     1501 gacttcaatg agttcccagt ccctgagcag ttcaagacca tatggaatgg gcggaagttg
     1561 gtcaccacag tgacagaaat tgctggataa gcgaagtgcc actgggttct ttgccctctc
     1621 cctcacaccg tgggataaat ctgtatcaag acggttcttt tttagatttc ctctaccttt
     1681 ctgctcttaa actgcttctc tgctttgaga agcacagcta cctgccttca ctgaaatata
     1741 cctcaggctg agatttgggg tgggatagca ggtctttgat cttctgcagg aaggtgcagc
     1801 ttttccgtgt cagctcaacc atacagccag tccattcttc aggaactgca catcaggaca
     1861 ggtgtgtttt agctttcagc ctttggggtt atttggggaa ggataaagca gtccccagga
     1921 attaacagat cacaatgttc acacaagtta atctttttct aacaatgagt gtgaaggtag
     1981 cagaagctgg tgtgatccta gttggttctt ctaacttaaa ctaattttca ctattgacaa
     2041 gtgaggcaag ggtttgcacg ggaccaaagg ctgaagcttg gccatctagc attccaagca
     2101 aaatgatttc ctgtaagcat tccttttctt ctgcattcca tcctgcatct gcccgaacct
     2161 gagatagtag gttgtcctgt gttagctgct gtggtggtgc cctgcaccca ggccagctaa
     2221 aggagtcttg gacccttcct ctctctgggg cccctgccca gcaccttcct acagagatga
     2281 cttaaaaaga gaggaaaaaa aaaggaaaac cacaccattc ccaggaatct ggcttccctt
     2341 cctccttcca tgctgggtgc ccatcatccg tcttcattgc ttccttgccc tgtcatgctc
     2401 aacagctttt ggcttctgtc agggcacctg cacagaggac taaaatctcc attgcaggct
     2461 ggttttaggt cttgtgtaaa aatcttgcac agcattgcta atgtaaattt cagtttttcc
     2521 tctaggacaa acactttacc aaaatatgca actttttttg gtgggaagag agattgtcct
     2581 gtgatttcta cccatttcct gaggcctgcg gaaatgaacc tttatgtact taaagttata
     2641 cagaaaatag aataaaatta ataccaaact tg
//
LOCUS       XM_032611060            2667 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X4, mRNA.
ACCESSION   XM_032611060
VERSION     XM_032611060.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2667
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 27 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             158..1585
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032466951.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    170..343
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1109..1576
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 ccccggtccc tcctctgggc cggcgtttcg gccggcggtt catttccggt gggggtgccg
       61 cgcccagtga gggcacggaa gtgggtcgcg cgaagattgc tgggcggttc ttgccggaag
      121 tggagagcgg ctgatcgcag tcccgaggtg ctacattatg gctgacatgc aaaatctggt
      181 agaaaggttg gagagagcag tgggccgcct ggaggcagtc tcccaggcct gtgacatgca
      241 ctgtgggtat gcagacagtg ctgcaaaagc aggaacgact ccatatgtgc aagcatttga
      301 ctcactcttg gccggtcctg tggcagagta cctcaagatc agtaaagaga ttgggggaga
      361 tgtgcagaag catgcggaga tggtccacac gggtctgaag ttggagcgag cgctcttggt
      421 tacagcctct caatgccagc agccagcagg taataagctt tccgatttgt tggcacccat
      481 ctccgagcag atccaagaag tgataacctt tcgggagaag aacagaggca gcaagttgtt
      541 caatcatctg tcaggtgtca gcgaaagtat ccaggccctg ggctgggtgg ctatggctcc
      601 caagcctggt ccctatgtga aggaaatgaa tgatgctgcc atgttttata caaaccgagt
      661 tctcaaggag tacaaagatg tggataagaa gcatgtggac tgggtcaaag cttacttgag
      721 tatatggaca gagctgcagg cttacattaa ggagttccat gccactggcc tggcctggag
      781 caaaacgggg cctgtggcaa aagaactgag tggattgcca tcgggaccct ctgctggatc
      841 gggtcctcct ccccccccac caggcccacc tccccctcca gccgccacca gttcaggctc
      901 agatgagtct gcttcacgct cagcactgtt tgcacagatt aatcaggggg agagcatcac
      961 acatgccctg aaacatgtat ctgatgactt gaagactcac aagaaccctg ccttgaaggc
     1021 tcagagtgct ccagtacgaa gtggccccaa accattctct gcatctaaac caggagtcag
     1081 tccttccccc aaaccagtca caaagaagga gccagctcta cttgaactgg agggcaagaa
     1141 gtggagagtg gaaaatcagg agaatgtttc caacctggtg atagatgaca cagagctgaa
     1201 acaggtggct tacatattca agtgtgtcaa ctcaacattg caaatcaagg gcaaaattaa
     1261 ctccattaca gtagataact gtaagaaact cggtctggtg ttcgatgacg tggtgggcat
     1321 tgtggagata atcaatagta gggatgtcaa agttcaggta atgggtaaag tgccaaccat
     1381 ttccatcaac aaaacagatg gctgccacgt ttacctgagc aagaattcac tggattgtga
     1441 gatagtcagt gccaaatctt ctgagatgaa tgtcctcatt cctacagaag gcgatgactt
     1501 caatgagttc ccagtccctg agcagttcaa gaccatatgg aatgggcgga agttggtcac
     1561 cacagtgaca gaaattgctg gataagcgaa gtgccactgg gttctttgcc ctctccctca
     1621 caccgtggga taaatctgta tcaagacggt tcttttttag atttcctcta cctttctgct
     1681 cttaaactgc ttctctgctt tgagaagcac agctacctgc cttcactgaa atatacctca
     1741 ggctgagatt tggggtggga tagcaggtct ttgatcttct gcaggaaggt gcagcttttc
     1801 cgtgtcagct caaccataca gccagtccat tcttcaggaa ctgcacatca ggacaggtgt
     1861 gttttagctt tcagcctttg gggttatttg gggaaggata aagcagtccc caggaattaa
     1921 cagatcacaa tgttcacaca agttaatctt tttctaacaa tgagtgtgaa ggtagcagaa
     1981 gctggtgtga tcctagttgg ttcttctaac ttaaactaat tttcactatt gacaagtgag
     2041 gcaagggttt gcacgggacc aaaggctgaa gcttggccat ctagcattcc aagcaaaatg
     2101 atttcctgta agcattcctt ttcttctgca ttccatcctg catctgcccg aacctgagat
     2161 agtaggttgt cctgtgttag ctgctgtggt ggtgccctgc acccaggcca gctaaaggag
     2221 tcttggaccc ttcctctctc tggggcccct gcccagcacc ttcctacaga gatgacttaa
     2281 aaagagagga aaaaaaaagg aaaaccacac cattcccagg aatctggctt cccttcctcc
     2341 ttccatgctg ggtgcccatc atccgtcttc attgcttcct tgccctgtca tgctcaacag
     2401 cttttggctt ctgtcagggc acctgcacag aggactaaaa tctccattgc aggctggttt
     2461 taggtcttgt gtaaaaatct tgcacagcat tgctaatgta aatttcagtt tttcctctag
     2521 gacaaacact ttaccaaaat atgcaacttt ttttggtggg aagagagatt gtcctgtgat
     2581 ttctacccat ttcctgaggc ctgcggaaat gaacctttat gtacttaaag ttatacagaa
     2641 aatagaataa aattaatacc aaacttg
//
LOCUS       XM_032611071            2770 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X5, mRNA.
ACCESSION   XM_032611071
VERSION     XM_032611071.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2770
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2770
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 26 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             261..1688
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032466962.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    273..446
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1212..1679
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 cggggtaggg actctggtcc tctccgcggc ccactggccc ctggcgttgt taatgaccct
       61 tctggcctag gtgcatgcgg tgagcccccc tgaggcggcc ggcgccggga ccctcaggcc
      121 gacccgggat cctgggcgcg gtctcttgtg gggccgcggt gaccaactga gccccgctct
      181 cctggggagg ccccttccgc tggacttcgc ggttctggcc atcagcctca gcggaggcct
      241 gattcctaag gtgctacatt atggctgaca tgcaaaatct ggtagaaagg ttggagagag
      301 cagtgggccg cctggaggca gtctcccagg cctgtgacat gcactgtggg tatgcagaca
      361 gtgctgcaaa agcaggaacg actccatatg tgcaagcatt tgactcactc ttggccggtc
      421 ctgtggcaga gtacctcaag atcagtaaag agattggggg agatgtgcag aagcatgcgg
      481 agatggtcca cacgggtctg aagttggagc gagcgctctt ggttacagcc tctcaatgcc
      541 agcagccagc aggtaataag ctttccgatt tgttggcacc catctccgag cagatccaag
      601 aagtgataac ctttcgggag aagaacagag gcagcaagtt gttcaatcat ctgtcaggtg
      661 tcagcgaaag tatccaggcc ctgggctggg tggctatggc tcccaagcct ggtccctatg
      721 tgaaggaaat gaatgatgct gccatgtttt atacaaaccg agttctcaag gagtacaaag
      781 atgtggataa gaagcatgtg gactgggtca aagcttactt gagtatatgg acagagctgc
      841 aggcttacat taaggagttc catgccactg gcctggcctg gagcaaaacg gggcctgtgg
      901 caaaagaact gagtggattg ccatcgggac cctctgctgg atcgggtcct cctccccccc
      961 caccaggccc acctccccct ccagccgcca ccagttcagg ctcagatgag tctgcttcac
     1021 gctcagcact gtttgcacag attaatcagg gggagagcat cacacatgcc ctgaaacatg
     1081 tatctgatga cttgaagact cacaagaacc ctgccttgaa ggctcagagt gctccagtac
     1141 gaagtggccc caaaccattc tctgcatcta aaccaggagt cagtccttcc cccaaaccag
     1201 tcacaaagaa ggagccagct ctacttgaac tggagggcaa gaagtggaga gtggaaaatc
     1261 aggagaatgt ttccaacctg gtgatagatg acacagagct gaaacaggtg gcttacatat
     1321 tcaagtgtgt caactcaaca ttgcaaatca agggcaaaat taactccatt acagtagata
     1381 actgtaagaa actcggtctg gtgttcgatg acgtggtggg cattgtggag ataatcaata
     1441 gtagggatgt caaagttcag gtaatgggta aagtgccaac catttccatc aacaaaacag
     1501 atggctgcca cgtttacctg agcaagaatt cactggattg tgagatagtc agtgccaaat
     1561 cttctgagat gaatgtcctc attcctacag aaggcgatga cttcaatgag ttcccagtcc
     1621 ctgagcagtt caagaccata tggaatgggc ggaagttggt caccacagtg acagaaattg
     1681 ctggataagc gaagtgccac tgggttcttt gccctctccc tcacaccgtg ggataaatct
     1741 gtatcaagac ggttcttttt tagatttcct ctacctttct gctcttaaac tgcttctctg
     1801 ctttgagaag cacagctacc tgccttcact gaaatatacc tcaggctgag atttggggtg
     1861 ggatagcagg tctttgatct tctgcaggaa ggtgcagctt ttccgtgtca gctcaaccat
     1921 acagccagtc cattcttcag gaactgcaca tcaggacagg tgtgttttag ctttcagcct
     1981 ttggggttat ttggggaagg ataaagcagt ccccaggaat taacagatca caatgttcac
     2041 acaagttaat ctttttctaa caatgagtgt gaaggtagca gaagctggtg tgatcctagt
     2101 tggttcttct aacttaaact aattttcact attgacaagt gaggcaaggg tttgcacggg
     2161 accaaaggct gaagcttggc catctagcat tccaagcaaa atgatttcct gtaagcattc
     2221 cttttcttct gcattccatc ctgcatctgc ccgaacctga gatagtaggt tgtcctgtgt
     2281 tagctgctgt ggtggtgccc tgcacccagg ccagctaaag gagtcttgga cccttcctct
     2341 ctctggggcc cctgcccagc accttcctac agagatgact taaaaagaga ggaaaaaaaa
     2401 aggaaaacca caccattccc aggaatctgg cttcccttcc tccttccatg ctgggtgccc
     2461 atcatccgtc ttcattgctt ccttgccctg tcatgctcaa cagcttttgg cttctgtcag
     2521 ggcacctgca cagaggacta aaatctccat tgcaggctgg ttttaggtct tgtgtaaaaa
     2581 tcttgcacag cattgctaat gtaaatttca gtttttcctc taggacaaac actttaccaa
     2641 aatatgcaac tttttttggt gggaagagag attgtcctgt gatttctacc catttcctga
     2701 ggcctgcgga aatgaacctt tatgtactta aagttataca gaaaatagaa taaaattaat
     2761 accaaacttg
//
LOCUS       XM_032611082            2540 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X6, mRNA.
ACCESSION   XM_032611082
VERSION     XM_032611082.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2540
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 26 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             31..1458
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032466973.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    43..216
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    982..1449
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 gaagtcttct ctattagact gtgctacatt atggctgaca tgcaaaatct ggtagaaagg
       61 ttggagagag cagtgggccg cctggaggca gtctcccagg cctgtgacat gcactgtggg
      121 tatgcagaca gtgctgcaaa agcaggaacg actccatatg tgcaagcatt tgactcactc
      181 ttggccggtc ctgtggcaga gtacctcaag atcagtaaag agattggggg agatgtgcag
      241 aagcatgcgg agatggtcca cacgggtctg aagttggagc gagcgctctt ggttacagcc
      301 tctcaatgcc agcagccagc aggtaataag ctttccgatt tgttggcacc catctccgag
      361 cagatccaag aagtgataac ctttcgggag aagaacagag gcagcaagtt gttcaatcat
      421 ctgtcaggtg tcagcgaaag tatccaggcc ctgggctggg tggctatggc tcccaagcct
      481 ggtccctatg tgaaggaaat gaatgatgct gccatgtttt atacaaaccg agttctcaag
      541 gagtacaaag atgtggataa gaagcatgtg gactgggtca aagcttactt gagtatatgg
      601 acagagctgc aggcttacat taaggagttc catgccactg gcctggcctg gagcaaaacg
      661 gggcctgtgg caaaagaact gagtggattg ccatcgggac cctctgctgg atcgggtcct
      721 cctccccccc caccaggccc acctccccct ccagccgcca ccagttcagg ctcagatgag
      781 tctgcttcac gctcagcact gtttgcacag attaatcagg gggagagcat cacacatgcc
      841 ctgaaacatg tatctgatga cttgaagact cacaagaacc ctgccttgaa ggctcagagt
      901 gctccagtac gaagtggccc caaaccattc tctgcatcta aaccaggagt cagtccttcc
      961 cccaaaccag tcacaaagaa ggagccagct ctacttgaac tggagggcaa gaagtggaga
     1021 gtggaaaatc aggagaatgt ttccaacctg gtgatagatg acacagagct gaaacaggtg
     1081 gcttacatat tcaagtgtgt caactcaaca ttgcaaatca agggcaaaat taactccatt
     1141 acagtagata actgtaagaa actcggtctg gtgttcgatg acgtggtggg cattgtggag
     1201 ataatcaata gtagggatgt caaagttcag gtaatgggta aagtgccaac catttccatc
     1261 aacaaaacag atggctgcca cgtttacctg agcaagaatt cactggattg tgagatagtc
     1321 agtgccaaat cttctgagat gaatgtcctc attcctacag aaggcgatga cttcaatgag
     1381 ttcccagtcc ctgagcagtt caagaccata tggaatgggc ggaagttggt caccacagtg
     1441 acagaaattg ctggataagc gaagtgccac tgggttcttt gccctctccc tcacaccgtg
     1501 ggataaatct gtatcaagac ggttcttttt tagatttcct ctacctttct gctcttaaac
     1561 tgcttctctg ctttgagaag cacagctacc tgccttcact gaaatatacc tcaggctgag
     1621 atttggggtg ggatagcagg tctttgatct tctgcaggaa ggtgcagctt ttccgtgtca
     1681 gctcaaccat acagccagtc cattcttcag gaactgcaca tcaggacagg tgtgttttag
     1741 ctttcagcct ttggggttat ttggggaagg ataaagcagt ccccaggaat taacagatca
     1801 caatgttcac acaagttaat ctttttctaa caatgagtgt gaaggtagca gaagctggtg
     1861 tgatcctagt tggttcttct aacttaaact aattttcact attgacaagt gaggcaaggg
     1921 tttgcacggg accaaaggct gaagcttggc catctagcat tccaagcaaa atgatttcct
     1981 gtaagcattc cttttcttct gcattccatc ctgcatctgc ccgaacctga gatagtaggt
     2041 tgtcctgtgt tagctgctgt ggtggtgccc tgcacccagg ccagctaaag gagtcttgga
     2101 cccttcctct ctctggggcc cctgcccagc accttcctac agagatgact taaaaagaga
     2161 ggaaaaaaaa aggaaaacca caccattccc aggaatctgg cttcccttcc tccttccatg
     2221 ctgggtgccc atcatccgtc ttcattgctt ccttgccctg tcatgctcaa cagcttttgg
     2281 cttctgtcag ggcacctgca cagaggacta aaatctccat tgcaggctgg ttttaggtct
     2341 tgtgtaaaaa tcttgcacag cattgctaat gtaaatttca gtttttcctc taggacaaac
     2401 actttaccaa aatatgcaac tttttttggt gggaagagag attgtcctgt gatttctacc
     2461 catttcctga ggcctgcgga aatgaacctt tatgtactta aagttataca gaaaatagaa
     2521 taaaattaat accaaacttg
//
LOCUS       XM_032611094            2650 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X7, mRNA.
ACCESSION   XM_032611094
VERSION     XM_032611094.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2650
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 27 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             141..1568
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032466985.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    153..326
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1092..1559
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 cggcgtttcg gccggcggtt catttccggt gggggtgccg cgcccagtga gggcacggaa
       61 gtgggtcgcg cgaagattgc tgggcggttc ttgccggaag tggagagcgg ctgatcgcag
      121 tcccgagcag gtgctacatt atggctgaca tgcaaaatct ggtagaaagg ttggagagag
      181 cagtgggccg cctggaggca gtctcccagg cctgtgacat gcactgtggg tatgcagaca
      241 gtgctgcaaa agcaggaacg actccatatg tgcaagcatt tgactcactc ttggccggtc
      301 ctgtggcaga gtacctcaag atcagtaaag agattggggg agatgtgcag aagcatgcgg
      361 agatggtcca cacgggtctg aagttggagc gagcgctctt ggttacagcc tctcaatgcc
      421 agcagccagc aggtaataag ctttccgatt tgttggcacc catctccgag cagatccaag
      481 aagtgataac ctttcgggag aagaacagag gcagcaagtt gttcaatcat ctgtcaggtg
      541 tcagcgaaag tatccaggcc ctgggctggg tggctatggc tcccaagcct ggtccctatg
      601 tgaaggaaat gaatgatgct gccatgtttt atacaaaccg agttctcaag gagtacaaag
      661 atgtggataa gaagcatgtg gactgggtca aagcttactt gagtatatgg acagagctgc
      721 aggcttacat taaggagttc catgccactg gcctggcctg gagcaaaacg gggcctgtgg
      781 caaaagaact gagtggattg ccatcgggac cctctgctgg atcgggtcct cctccccccc
      841 caccaggccc acctccccct ccagccgcca ccagttcagg ctcagatgag tctgcttcac
      901 gctcagcact gtttgcacag attaatcagg gggagagcat cacacatgcc ctgaaacatg
      961 tatctgatga cttgaagact cacaagaacc ctgccttgaa ggctcagagt gctccagtac
     1021 gaagtggccc caaaccattc tctgcatcta aaccaggagt cagtccttcc cccaaaccag
     1081 tcacaaagaa ggagccagct ctacttgaac tggagggcaa gaagtggaga gtggaaaatc
     1141 aggagaatgt ttccaacctg gtgatagatg acacagagct gaaacaggtg gcttacatat
     1201 tcaagtgtgt caactcaaca ttgcaaatca agggcaaaat taactccatt acagtagata
     1261 actgtaagaa actcggtctg gtgttcgatg acgtggtggg cattgtggag ataatcaata
     1321 gtagggatgt caaagttcag gtaatgggta aagtgccaac catttccatc aacaaaacag
     1381 atggctgcca cgtttacctg agcaagaatt cactggattg tgagatagtc agtgccaaat
     1441 cttctgagat gaatgtcctc attcctacag aaggcgatga cttcaatgag ttcccagtcc
     1501 ctgagcagtt caagaccata tggaatgggc ggaagttggt caccacagtg acagaaattg
     1561 ctggataagc gaagtgccac tgggttcttt gccctctccc tcacaccgtg ggataaatct
     1621 gtatcaagac ggttcttttt tagatttcct ctacctttct gctcttaaac tgcttctctg
     1681 ctttgagaag cacagctacc tgccttcact gaaatatacc tcaggctgag atttggggtg
     1741 ggatagcagg tctttgatct tctgcaggaa ggtgcagctt ttccgtgtca gctcaaccat
     1801 acagccagtc cattcttcag gaactgcaca tcaggacagg tgtgttttag ctttcagcct
     1861 ttggggttat ttggggaagg ataaagcagt ccccaggaat taacagatca caatgttcac
     1921 acaagttaat ctttttctaa caatgagtgt gaaggtagca gaagctggtg tgatcctagt
     1981 tggttcttct aacttaaact aattttcact attgacaagt gaggcaaggg tttgcacggg
     2041 accaaaggct gaagcttggc catctagcat tccaagcaaa atgatttcct gtaagcattc
     2101 cttttcttct gcattccatc ctgcatctgc ccgaacctga gatagtaggt tgtcctgtgt
     2161 tagctgctgt ggtggtgccc tgcacccagg ccagctaaag gagtcttgga cccttcctct
     2221 ctctggggcc cctgcccagc accttcctac agagatgact taaaaagaga ggaaaaaaaa
     2281 aggaaaacca caccattccc aggaatctgg cttcccttcc tccttccatg ctgggtgccc
     2341 atcatccgtc ttcattgctt ccttgccctg tcatgctcaa cagcttttgg cttctgtcag
     2401 ggcacctgca cagaggacta aaatctccat tgcaggctgg ttttaggtct tgtgtaaaaa
     2461 tcttgcacag cattgctaat gtaaatttca gtttttcctc taggacaaac actttaccaa
     2521 aatatgcaac tttttttggt gggaagagag attgtcctgt gatttctacc catttcctga
     2581 ggcctgcgga aatgaacctt tatgtactta aagttataca gaaaatagaa taaaattaat
     2641 accaaacttg
//
LOCUS       XM_032611104            2749 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X8, mRNA.
ACCESSION   XM_032611104
VERSION     XM_032611104.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2749
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2749
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 27 long SRA reads, 10
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116743015"
     CDS             240..1667
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032466995.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    252..425
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1191..1658
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 ggctgatcgc agtcccgagg tgaggcagat ctctgagttg ttagtgcaca tgtgaagtct
       61 tctctattag actgtaagtt attgggggca ggataaatac cctattcatc ttggttttgg
      121 gcattccata tgtaggcagc aggatgttgt aggaaaaaac acaaaactta gagccataag
      181 gcttgaattt gaggactggc ttccctacca gctaactgtg agactatagg tgctacatta
      241 tggctgacat gcaaaatctg gtagaaaggt tggagagagc agtgggccgc ctggaggcag
      301 tctcccaggc ctgtgacatg cactgtgggt atgcagacag tgctgcaaaa gcaggaacga
      361 ctccatatgt gcaagcattt gactcactct tggccggtcc tgtggcagag tacctcaaga
      421 tcagtaaaga gattggggga gatgtgcaga agcatgcgga gatggtccac acgggtctga
      481 agttggagcg agcgctcttg gttacagcct ctcaatgcca gcagccagca ggtaataagc
      541 tttccgattt gttggcaccc atctccgagc agatccaaga agtgataacc tttcgggaga
      601 agaacagagg cagcaagttg ttcaatcatc tgtcaggtgt cagcgaaagt atccaggccc
      661 tgggctgggt ggctatggct cccaagcctg gtccctatgt gaaggaaatg aatgatgctg
      721 ccatgtttta tacaaaccga gttctcaagg agtacaaaga tgtggataag aagcatgtgg
      781 actgggtcaa agcttacttg agtatatgga cagagctgca ggcttacatt aaggagttcc
      841 atgccactgg cctggcctgg agcaaaacgg ggcctgtggc aaaagaactg agtggattgc
      901 catcgggacc ctctgctgga tcgggtcctc ctcccccccc accaggccca cctccccctc
      961 cagccgccac cagttcaggc tcagatgagt ctgcttcacg ctcagcactg tttgcacaga
     1021 ttaatcaggg ggagagcatc acacatgccc tgaaacatgt atctgatgac ttgaagactc
     1081 acaagaaccc tgccttgaag gctcagagtg ctccagtacg aagtggcccc aaaccattct
     1141 ctgcatctaa accaggagtc agtccttccc ccaaaccagt cacaaagaag gagccagctc
     1201 tacttgaact ggagggcaag aagtggagag tggaaaatca ggagaatgtt tccaacctgg
     1261 tgatagatga cacagagctg aaacaggtgg cttacatatt caagtgtgtc aactcaacat
     1321 tgcaaatcaa gggcaaaatt aactccatta cagtagataa ctgtaagaaa ctcggtctgg
     1381 tgttcgatga cgtggtgggc attgtggaga taatcaatag tagggatgtc aaagttcagg
     1441 taatgggtaa agtgccaacc atttccatca acaaaacaga tggctgccac gtttacctga
     1501 gcaagaattc actggattgt gagatagtca gtgccaaatc ttctgagatg aatgtcctca
     1561 ttcctacaga aggcgatgac ttcaatgagt tcccagtccc tgagcagttc aagaccatat
     1621 ggaatgggcg gaagttggtc accacagtga cagaaattgc tggataagcg aagtgccact
     1681 gggttctttg ccctctccct cacaccgtgg gataaatctg tatcaagacg gttctttttt
     1741 agatttcctc tacctttctg ctcttaaact gcttctctgc tttgagaagc acagctacct
     1801 gccttcactg aaatatacct caggctgaga tttggggtgg gatagcaggt ctttgatctt
     1861 ctgcaggaag gtgcagcttt tccgtgtcag ctcaaccata cagccagtcc attcttcagg
     1921 aactgcacat caggacaggt gtgttttagc tttcagcctt tggggttatt tggggaagga
     1981 taaagcagtc cccaggaatt aacagatcac aatgttcaca caagttaatc tttttctaac
     2041 aatgagtgtg aaggtagcag aagctggtgt gatcctagtt ggttcttcta acttaaacta
     2101 attttcacta ttgacaagtg aggcaagggt ttgcacggga ccaaaggctg aagcttggcc
     2161 atctagcatt ccaagcaaaa tgatttcctg taagcattcc ttttcttctg cattccatcc
     2221 tgcatctgcc cgaacctgag atagtaggtt gtcctgtgtt agctgctgtg gtggtgccct
     2281 gcacccaggc cagctaaagg agtcttggac ccttcctctc tctggggccc ctgcccagca
     2341 ccttcctaca gagatgactt aaaaagagag gaaaaaaaaa ggaaaaccac accattccca
     2401 ggaatctggc ttcccttcct ccttccatgc tgggtgccca tcatccgtct tcattgcttc
     2461 cttgccctgt catgctcaac agcttttggc ttctgtcagg gcacctgcac agaggactaa
     2521 aatctccatt gcaggctggt tttaggtctt gtgtaaaaat cttgcacagc attgctaatg
     2581 taaatttcag tttttcctct aggacaaaca ctttaccaaa atatgcaact ttttttggtg
     2641 ggaagagaga ttgtcctgtg atttctaccc atttcctgag gcctgcggaa atgaaccttt
     2701 atgtacttaa agttatacag aaaatagaat aaaattaata ccaaacttg
//
LOCUS       XM_032611113            2618 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X9, mRNA.
ACCESSION   XM_032611113
VERSION     XM_032611113.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2618
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 27 long SRA reads, 10
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116743015"
     CDS             109..1536
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032467004.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    121..294
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1060..1527
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 cccgaggtga ggcagatctc tgagttgcag ttattttttt aactgtggac tgagccttta
       61 aaaagtgact tcctcctttc agttttctgt gaagtatggt gctacattat ggctgacatg
      121 caaaatctgg tagaaaggtt ggagagagca gtgggccgcc tggaggcagt ctcccaggcc
      181 tgtgacatgc actgtgggta tgcagacagt gctgcaaaag caggaacgac tccatatgtg
      241 caagcatttg actcactctt ggccggtcct gtggcagagt acctcaagat cagtaaagag
      301 attgggggag atgtgcagaa gcatgcggag atggtccaca cgggtctgaa gttggagcga
      361 gcgctcttgg ttacagcctc tcaatgccag cagccagcag gtaataagct ttccgatttg
      421 ttggcaccca tctccgagca gatccaagaa gtgataacct ttcgggagaa gaacagaggc
      481 agcaagttgt tcaatcatct gtcaggtgtc agcgaaagta tccaggccct gggctgggtg
      541 gctatggctc ccaagcctgg tccctatgtg aaggaaatga atgatgctgc catgttttat
      601 acaaaccgag ttctcaagga gtacaaagat gtggataaga agcatgtgga ctgggtcaaa
      661 gcttacttga gtatatggac agagctgcag gcttacatta aggagttcca tgccactggc
      721 ctggcctgga gcaaaacggg gcctgtggca aaagaactga gtggattgcc atcgggaccc
      781 tctgctggat cgggtcctcc tcccccccca ccaggcccac ctccccctcc agccgccacc
      841 agttcaggct cagatgagtc tgcttcacgc tcagcactgt ttgcacagat taatcagggg
      901 gagagcatca cacatgccct gaaacatgta tctgatgact tgaagactca caagaaccct
      961 gccttgaagg ctcagagtgc tccagtacga agtggcccca aaccattctc tgcatctaaa
     1021 ccaggagtca gtccttcccc caaaccagtc acaaagaagg agccagctct acttgaactg
     1081 gagggcaaga agtggagagt ggaaaatcag gagaatgttt ccaacctggt gatagatgac
     1141 acagagctga aacaggtggc ttacatattc aagtgtgtca actcaacatt gcaaatcaag
     1201 ggcaaaatta actccattac agtagataac tgtaagaaac tcggtctggt gttcgatgac
     1261 gtggtgggca ttgtggagat aatcaatagt agggatgtca aagttcaggt aatgggtaaa
     1321 gtgccaacca tttccatcaa caaaacagat ggctgccacg tttacctgag caagaattca
     1381 ctggattgtg agatagtcag tgccaaatct tctgagatga atgtcctcat tcctacagaa
     1441 ggcgatgact tcaatgagtt cccagtccct gagcagttca agaccatatg gaatgggcgg
     1501 aagttggtca ccacagtgac agaaattgct ggataagcga agtgccactg ggttctttgc
     1561 cctctccctc acaccgtggg ataaatctgt atcaagacgg ttctttttta gatttcctct
     1621 acctttctgc tcttaaactg cttctctgct ttgagaagca cagctacctg ccttcactga
     1681 aatatacctc aggctgagat ttggggtggg atagcaggtc tttgatcttc tgcaggaagg
     1741 tgcagctttt ccgtgtcagc tcaaccatac agccagtcca ttcttcagga actgcacatc
     1801 aggacaggtg tgttttagct ttcagccttt ggggttattt ggggaaggat aaagcagtcc
     1861 ccaggaatta acagatcaca atgttcacac aagttaatct ttttctaaca atgagtgtga
     1921 aggtagcaga agctggtgtg atcctagttg gttcttctaa cttaaactaa ttttcactat
     1981 tgacaagtga ggcaagggtt tgcacgggac caaaggctga agcttggcca tctagcattc
     2041 caagcaaaat gatttcctgt aagcattcct tttcttctgc attccatcct gcatctgccc
     2101 gaacctgaga tagtaggttg tcctgtgtta gctgctgtgg tggtgccctg cacccaggcc
     2161 agctaaagga gtcttggacc cttcctctct ctggggcccc tgcccagcac cttcctacag
     2221 agatgactta aaaagagagg aaaaaaaaag gaaaaccaca ccattcccag gaatctggct
     2281 tcccttcctc cttccatgct gggtgcccat catccgtctt cattgcttcc ttgccctgtc
     2341 atgctcaaca gcttttggct tctgtcaggg cacctgcaca gaggactaaa atctccattg
     2401 caggctggtt ttaggtcttg tgtaaaaatc ttgcacagca ttgctaatgt aaatttcagt
     2461 ttttcctcta ggacaaacac tttaccaaaa tatgcaactt tttttggtgg gaagagagat
     2521 tgtcctgtga tttctaccca tttcctgagg cctgcggaaa tgaaccttta tgtacttaaa
     2581 gttatacaga aaatagaata aaattaatac caaacttg
//
LOCUS       XM_032611122            2739 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X10, mRNA.
ACCESSION   XM_032611122
VERSION     XM_032611122.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2739
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 27 long SRA reads, 10
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116743015"
     CDS             230..1657
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X2"
                     /protein_id="XP_032467013.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKAGTTPYV
                     QAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLS
                     DLLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDA
                     AMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELS
                     GLPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSD
                     DLKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQ
                     ENVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEII
                     NSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNE
                     FPVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    242..415
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1181..1648
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 ttcggccggc ggttcatttc cggtgggggt gccgcgccca gtgagggcac ggaagtgggt
       61 cgcgcgaaga ttgctgggcg gttcttgccg gaagtggaga gcggctgatc gcagtcccga
      121 ggcagcagga tgttgtagga aaaaacacaa aacttagagc cataaggctt gaatttgagg
      181 actggcttcc ctaccagcta actgtgagac tataggcaag tgctacatta tggctgacat
      241 gcaaaatctg gtagaaaggt tggagagagc agtgggccgc ctggaggcag tctcccaggc
      301 ctgtgacatg cactgtgggt atgcagacag tgctgcaaaa gcaggaacga ctccatatgt
      361 gcaagcattt gactcactct tggccggtcc tgtggcagag tacctcaaga tcagtaaaga
      421 gattggggga gatgtgcaga agcatgcgga gatggtccac acgggtctga agttggagcg
      481 agcgctcttg gttacagcct ctcaatgcca gcagccagca ggtaataagc tttccgattt
      541 gttggcaccc atctccgagc agatccaaga agtgataacc tttcgggaga agaacagagg
      601 cagcaagttg ttcaatcatc tgtcaggtgt cagcgaaagt atccaggccc tgggctgggt
      661 ggctatggct cccaagcctg gtccctatgt gaaggaaatg aatgatgctg ccatgtttta
      721 tacaaaccga gttctcaagg agtacaaaga tgtggataag aagcatgtgg actgggtcaa
      781 agcttacttg agtatatgga cagagctgca ggcttacatt aaggagttcc atgccactgg
      841 cctggcctgg agcaaaacgg ggcctgtggc aaaagaactg agtggattgc catcgggacc
      901 ctctgctgga tcgggtcctc ctcccccccc accaggccca cctccccctc cagccgccac
      961 cagttcaggc tcagatgagt ctgcttcacg ctcagcactg tttgcacaga ttaatcaggg
     1021 ggagagcatc acacatgccc tgaaacatgt atctgatgac ttgaagactc acaagaaccc
     1081 tgccttgaag gctcagagtg ctccagtacg aagtggcccc aaaccattct ctgcatctaa
     1141 accaggagtc agtccttccc ccaaaccagt cacaaagaag gagccagctc tacttgaact
     1201 ggagggcaag aagtggagag tggaaaatca ggagaatgtt tccaacctgg tgatagatga
     1261 cacagagctg aaacaggtgg cttacatatt caagtgtgtc aactcaacat tgcaaatcaa
     1321 gggcaaaatt aactccatta cagtagataa ctgtaagaaa ctcggtctgg tgttcgatga
     1381 cgtggtgggc attgtggaga taatcaatag tagggatgtc aaagttcagg taatgggtaa
     1441 agtgccaacc atttccatca acaaaacaga tggctgccac gtttacctga gcaagaattc
     1501 actggattgt gagatagtca gtgccaaatc ttctgagatg aatgtcctca ttcctacaga
     1561 aggcgatgac ttcaatgagt tcccagtccc tgagcagttc aagaccatat ggaatgggcg
     1621 gaagttggtc accacagtga cagaaattgc tggataagcg aagtgccact gggttctttg
     1681 ccctctccct cacaccgtgg gataaatctg tatcaagacg gttctttttt agatttcctc
     1741 tacctttctg ctcttaaact gcttctctgc tttgagaagc acagctacct gccttcactg
     1801 aaatatacct caggctgaga tttggggtgg gatagcaggt ctttgatctt ctgcaggaag
     1861 gtgcagcttt tccgtgtcag ctcaaccata cagccagtcc attcttcagg aactgcacat
     1921 caggacaggt gtgttttagc tttcagcctt tggggttatt tggggaagga taaagcagtc
     1981 cccaggaatt aacagatcac aatgttcaca caagttaatc tttttctaac aatgagtgtg
     2041 aaggtagcag aagctggtgt gatcctagtt ggttcttcta acttaaacta attttcacta
     2101 ttgacaagtg aggcaagggt ttgcacggga ccaaaggctg aagcttggcc atctagcatt
     2161 ccaagcaaaa tgatttcctg taagcattcc ttttcttctg cattccatcc tgcatctgcc
     2221 cgaacctgag atagtaggtt gtcctgtgtt agctgctgtg gtggtgccct gcacccaggc
     2281 cagctaaagg agtcttggac ccttcctctc tctggggccc ctgcccagca ccttcctaca
     2341 gagatgactt aaaaagagag gaaaaaaaaa ggaaaaccac accattccca ggaatctggc
     2401 ttcccttcct ccttccatgc tgggtgccca tcatccgtct tcattgcttc cttgccctgt
     2461 catgctcaac agcttttggc ttctgtcagg gcacctgcac agaggactaa aatctccatt
     2521 gcaggctggt tttaggtctt gtgtaaaaat cttgcacagc attgctaatg taaatttcag
     2581 tttttcctct aggacaaaca ctttaccaaa atatgcaact ttttttggtg ggaagagaga
     2641 ttgtcctgtg atttctaccc atttcctgag gcctgcggaa atgaaccttt atgtacttaa
     2701 agttatacag aaaatagaat aaaattaata ccaaacttg
//
LOCUS       XR_004346663            2629 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X11, misc_RNA.
ACCESSION   XR_004346663
VERSION     XR_004346663.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2629
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 10 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743015"
     misc_RNA        1..2629
                     /gene="CAP1"
                     /product="cyclase associated actin cytoskeleton regulatory
                     protein 1, transcript variant X11"
                     /db_xref="GeneID:116743015"
ORIGIN      
        1 ccccggtccc tcctctgggc cggcgtttcg gccggcggtt catttccggt gggggtgccg
       61 cgcccagtga gggcacggaa gtgggtcgcg cgaagattgc tgggcggttc ttgccggaag
      121 tggagagcgg ctgatcgcag tcccgaggtg ctacattatg gctgacatgc aaaatctggt
      181 agaaaggttg gagagagcag tgggccgcct ggaggcagtc tcccaggcct gtgacatgca
      241 ctgtgggtat gcagacagtg ctgcaaaagc aggaacgact ccatatgtgc aagcatttga
      301 ctcactcttg gccggtcctg tggcagagta cctcaagatc agtaaagaga ttgggggaga
      361 tgtgcagaag catgcggaga tggtccacac gggtctgaag ttggagcgag cgctcttggt
      421 tacagcctct caatgccagc agccagcagg taataagctt tccgatttgt tggcacccat
      481 ctccgagcag atccaagaag tgataacctt tcgggagaag aacagaggca gcaagttgtt
      541 caatcatctg tcaggtgtca gcgaaagtat ccaggccctg ggctgggtgg ctatggctcc
      601 caagcctggt ccctatgtga aggaaatgaa tgatgctgcc atgttttata caaaccgagt
      661 tctcaaggag tacaaagatg tggataagaa gcatgtggac tgggtcaaag cttacttgag
      721 tatatggaca gagctgcagg cttacattaa ggagttccat gccactggcc tggcctggag
      781 caaaacgggg cctgtggcaa aagaactgag tggattgcca tcgggaccct ctgctggatc
      841 gggtcctcct ccccccccac caggcccacc tccccctcca gccgccacca gttcaggctc
      901 agatgagtct gcttcacgct cagcactgtt tgcacagatt aatcaggggg agagcatcac
      961 acatgccctg aaacatgtat ctgatgactt gaagactcac aagaaccctg ccttgaaggc
     1021 tcagagtgct ccagtacgaa gtggccccaa accattctct gcatctaaac caggagtcag
     1081 tccttccccc aaaccagtca caaagaagga gccagctcta cttgaactgg agggcaagaa
     1141 gtggagagtg gaaaatcagg agaatgtttc caacctggtg atagatgaca cagagctgaa
     1201 acaggtggct tacatattca agtgtgtcaa ctcaacattg caaatcaagg gcaaaattaa
     1261 ctccattaca gtagataact gtaagaaact cggtctggtg ttcgatgacg tggtgggcat
     1321 tgtggagata atcaatagta gggatgtcaa agttcaggta atgggtaaag tgccaaccat
     1381 ttccatcaac aaaacagatg gctgccacgt ttacctgagc aagaattcac tggattgtga
     1441 gatagtcagt gccaaatctt ctgagatgaa tgtcctcatt cctacagaag gcgatgactt
     1501 caatgagttc ccagtccctg agcagttcaa gaccatatgg aatgggcgga agttggtcac
     1561 cacagtgaca gaaattgctg gataagcgaa gtgccactgg gttctttgcc ctctccctca
     1621 caccgtggga taaatctgta tcaagacggt tcttttttag atttcctcta cctttctgct
     1681 cttaaactgc ttctctgctt tgagaagcac agctacctgc cttcactgaa atatacctca
     1741 ggctgagatt tggggtggga tagcaggtct ttgatcttct gcaggaaggt gcagcttttc
     1801 cgtgtcagct caaccataca gccagtccat tcttcaggaa ctgcacatca ggacaggtgt
     1861 gttttagctt tcagcctttg gggttatttg gggaaggata aagcagtccc caggaattaa
     1921 cagatcacaa tgttcacaca agttaatctt tttctaacaa tgagtgtgaa ggtagcagaa
     1981 gctggtgtga tcctagttgg ttcttctaac ttaaactaat tttcactatt gacaagtgag
     2041 gcaagggttt gcacgggacc aaaggctgaa gcttggccat ctagcattcc aagcaaaatg
     2101 atttcctgta agcattcctt ttcttctgca ttccatcctg catctgcccg aacctgagat
     2161 agtaggttgt cctgtgttag ctgctgtggt ggtgccctgc acccaggcca gctaaaggag
     2221 tcttggaccc ttcctctctc tggggcccct gcccagcacc ttcctacaga gatgacttaa
     2281 aaagagagga aaaaaaaagg aaaaccacac cattcccagg aatctggctt cccttcctcc
     2341 ttccatgctg ggtgcccatc atccgtcttc attgcttcct tgccctgtca tgctcaacag
     2401 cttttggctt ctgtcagggc acctgcacag aggactaaaa tctccattgc aggctggttt
     2461 taggtcttgt tttttcctct aggacaaaca ctttaccaaa atatgcaact ttttttggtg
     2521 ggaagagaga ttgtcctgtg atttctaccc atttcctgag gcctgcggaa atgaaccttt
     2581 atgtacttaa agttatacag aaaatagaat aaaattaata ccaaacttg
//
LOCUS       XM_032611133            2672 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X12, mRNA.
ACCESSION   XM_032611133
VERSION     XM_032611133.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2672
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 32 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             166..1590
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X3"
                     /protein_id="XP_032467024.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKGTTPYVQ
                     AFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSD
                     LLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDAA
                     MFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELSG
                     LPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSDD
                     LKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQE
                     NVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIIN
                     SRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNEF
                     PVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    178..348
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1114..1581
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 tcctctgggc cggcgtttcg gccggcggtt catttccggt gggggtgccg cgcccagtga
       61 gggcacggaa gtgggtcgcg cgaagattgc tgggcggttc ttgccggaag tggagagcgg
      121 ctgatcgcag tcccgaggtg aggcagatct ctgaggtgct acattatggc tgacatgcaa
      181 aatctggtag aaaggttgga gagagcagtg ggccgcctgg aggcagtctc ccaggcctgt
      241 gacatgcact gtgggtatgc agacagtgct gcaaaaggaa cgactccata tgtgcaagca
      301 tttgactcac tcttggccgg tcctgtggca gagtacctca agatcagtaa agagattggg
      361 ggagatgtgc agaagcatgc ggagatggtc cacacgggtc tgaagttgga gcgagcgctc
      421 ttggttacag cctctcaatg ccagcagcca gcaggtaata agctttccga tttgttggca
      481 cccatctccg agcagatcca agaagtgata acctttcggg agaagaacag aggcagcaag
      541 ttgttcaatc atctgtcagg tgtcagcgaa agtatccagg ccctgggctg ggtggctatg
      601 gctcccaagc ctggtcccta tgtgaaggaa atgaatgatg ctgccatgtt ttatacaaac
      661 cgagttctca aggagtacaa agatgtggat aagaagcatg tggactgggt caaagcttac
      721 ttgagtatat ggacagagct gcaggcttac attaaggagt tccatgccac tggcctggcc
      781 tggagcaaaa cggggcctgt ggcaaaagaa ctgagtggat tgccatcggg accctctgct
      841 ggatcgggtc ctcctccccc cccaccaggc ccacctcccc ctccagccgc caccagttca
      901 ggctcagatg agtctgcttc acgctcagca ctgtttgcac agattaatca gggggagagc
      961 atcacacatg ccctgaaaca tgtatctgat gacttgaaga ctcacaagaa ccctgccttg
     1021 aaggctcaga gtgctccagt acgaagtggc cccaaaccat tctctgcatc taaaccagga
     1081 gtcagtcctt cccccaaacc agtcacaaag aaggagccag ctctacttga actggagggc
     1141 aagaagtgga gagtggaaaa tcaggagaat gtttccaacc tggtgataga tgacacagag
     1201 ctgaaacagg tggcttacat attcaagtgt gtcaactcaa cattgcaaat caagggcaaa
     1261 attaactcca ttacagtaga taactgtaag aaactcggtc tggtgttcga tgacgtggtg
     1321 ggcattgtgg agataatcaa tagtagggat gtcaaagttc aggtaatggg taaagtgcca
     1381 accatttcca tcaacaaaac agatggctgc cacgtttacc tgagcaagaa ttcactggat
     1441 tgtgagatag tcagtgccaa atcttctgag atgaatgtcc tcattcctac agaaggcgat
     1501 gacttcaatg agttcccagt ccctgagcag ttcaagacca tatggaatgg gcggaagttg
     1561 gtcaccacag tgacagaaat tgctggataa gcgaagtgcc actgggttct ttgccctctc
     1621 cctcacaccg tgggataaat ctgtatcaag acggttcttt tttagatttc ctctaccttt
     1681 ctgctcttaa actgcttctc tgctttgaga agcacagcta cctgccttca ctgaaatata
     1741 cctcaggctg agatttgggg tgggatagca ggtctttgat cttctgcagg aaggtgcagc
     1801 ttttccgtgt cagctcaacc atacagccag tccattcttc aggaactgca catcaggaca
     1861 ggtgtgtttt agctttcagc ctttggggtt atttggggaa ggataaagca gtccccagga
     1921 attaacagat cacaatgttc acacaagtta atctttttct aacaatgagt gtgaaggtag
     1981 cagaagctgg tgtgatccta gttggttctt ctaacttaaa ctaattttca ctattgacaa
     2041 gtgaggcaag ggtttgcacg ggaccaaagg ctgaagcttg gccatctagc attccaagca
     2101 aaatgatttc ctgtaagcat tccttttctt ctgcattcca tcctgcatct gcccgaacct
     2161 gagatagtag gttgtcctgt gttagctgct gtggtggtgc cctgcaccca ggccagctaa
     2221 aggagtcttg gacccttcct ctctctgggg cccctgccca gcaccttcct acagagatga
     2281 cttaaaaaga gaggaaaaaa aaaggaaaac cacaccattc ccaggaatct ggcttccctt
     2341 cctccttcca tgctgggtgc ccatcatccg tcttcattgc ttccttgccc tgtcatgctc
     2401 aacagctttt ggcttctgtc agggcacctg cacagaggac taaaatctcc attgcaggct
     2461 ggttttaggt cttgtgtaaa aatcttgcac agcattgcta atgtaaattt cagtttttcc
     2521 tctaggacaa acactttacc aaaatatgca actttttttg gtgggaagag agattgtcct
     2581 gtgatttcta cccatttcct gaggcctgcg gaaatgaacc tttatgtact taaagttata
     2641 cagaaaatag aataaaatta ataccaaact tg
//
LOCUS       XM_032611142            2664 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X13, mRNA.
ACCESSION   XM_032611142
VERSION     XM_032611142.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2664
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2664
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             158..1582
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X3"
                     /protein_id="XP_032467033.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKGTTPYVQ
                     AFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSD
                     LLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDAA
                     MFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELSG
                     LPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSDD
                     LKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQE
                     NVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIIN
                     SRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNEF
                     PVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    170..340
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1106..1573
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 ccccggtccc tcctctgggc cggcgtttcg gccggcggtt catttccggt gggggtgccg
       61 cgcccagtga gggcacggaa gtgggtcgcg cgaagattgc tgggcggttc ttgccggaag
      121 tggagagcgg ctgatcgcag tcccgaggtg ctacattatg gctgacatgc aaaatctggt
      181 agaaaggttg gagagagcag tgggccgcct ggaggcagtc tcccaggcct gtgacatgca
      241 ctgtgggtat gcagacagtg ctgcaaaagg aacgactcca tatgtgcaag catttgactc
      301 actcttggcc ggtcctgtgg cagagtacct caagatcagt aaagagattg ggggagatgt
      361 gcagaagcat gcggagatgg tccacacggg tctgaagttg gagcgagcgc tcttggttac
      421 agcctctcaa tgccagcagc cagcaggtaa taagctttcc gatttgttgg cacccatctc
      481 cgagcagatc caagaagtga taacctttcg ggagaagaac agaggcagca agttgttcaa
      541 tcatctgtca ggtgtcagcg aaagtatcca ggccctgggc tgggtggcta tggctcccaa
      601 gcctggtccc tatgtgaagg aaatgaatga tgctgccatg ttttatacaa accgagttct
      661 caaggagtac aaagatgtgg ataagaagca tgtggactgg gtcaaagctt acttgagtat
      721 atggacagag ctgcaggctt acattaagga gttccatgcc actggcctgg cctggagcaa
      781 aacggggcct gtggcaaaag aactgagtgg attgccatcg ggaccctctg ctggatcggg
      841 tcctcctccc cccccaccag gcccacctcc ccctccagcc gccaccagtt caggctcaga
      901 tgagtctgct tcacgctcag cactgtttgc acagattaat cagggggaga gcatcacaca
      961 tgccctgaaa catgtatctg atgacttgaa gactcacaag aaccctgcct tgaaggctca
     1021 gagtgctcca gtacgaagtg gccccaaacc attctctgca tctaaaccag gagtcagtcc
     1081 ttcccccaaa ccagtcacaa agaaggagcc agctctactt gaactggagg gcaagaagtg
     1141 gagagtggaa aatcaggaga atgtttccaa cctggtgata gatgacacag agctgaaaca
     1201 ggtggcttac atattcaagt gtgtcaactc aacattgcaa atcaagggca aaattaactc
     1261 cattacagta gataactgta agaaactcgg tctggtgttc gatgacgtgg tgggcattgt
     1321 ggagataatc aatagtaggg atgtcaaagt tcaggtaatg ggtaaagtgc caaccatttc
     1381 catcaacaaa acagatggct gccacgttta cctgagcaag aattcactgg attgtgagat
     1441 agtcagtgcc aaatcttctg agatgaatgt cctcattcct acagaaggcg atgacttcaa
     1501 tgagttccca gtccctgagc agttcaagac catatggaat gggcggaagt tggtcaccac
     1561 agtgacagaa attgctggat aagcgaagtg ccactgggtt ctttgccctc tccctcacac
     1621 cgtgggataa atctgtatca agacggttct tttttagatt tcctctacct ttctgctctt
     1681 aaactgcttc tctgctttga gaagcacagc tacctgcctt cactgaaata tacctcaggc
     1741 tgagatttgg ggtgggatag caggtctttg atcttctgca ggaaggtgca gcttttccgt
     1801 gtcagctcaa ccatacagcc agtccattct tcaggaactg cacatcagga caggtgtgtt
     1861 ttagctttca gcctttgggg ttatttgggg aaggataaag cagtccccag gaattaacag
     1921 atcacaatgt tcacacaagt taatcttttt ctaacaatga gtgtgaaggt agcagaagct
     1981 ggtgtgatcc tagttggttc ttctaactta aactaatttt cactattgac aagtgaggca
     2041 agggtttgca cgggaccaaa ggctgaagct tggccatcta gcattccaag caaaatgatt
     2101 tcctgtaagc attccttttc ttctgcattc catcctgcat ctgcccgaac ctgagatagt
     2161 aggttgtcct gtgttagctg ctgtggtggt gccctgcacc caggccagct aaaggagtct
     2221 tggacccttc ctctctctgg ggcccctgcc cagcaccttc ctacagagat gacttaaaaa
     2281 gagaggaaaa aaaaaggaaa accacaccat tcccaggaat ctggcttccc ttcctccttc
     2341 catgctgggt gcccatcatc cgtcttcatt gcttccttgc cctgtcatgc tcaacagctt
     2401 ttggcttctg tcagggcacc tgcacagagg actaaaatct ccattgcagg ctggttttag
     2461 gtcttgtgta aaaatcttgc acagcattgc taatgtaaat ttcagttttt cctctaggac
     2521 aaacacttta ccaaaatatg caactttttt tggtgggaag agagattgtc ctgtgatttc
     2581 tacccatttc ctgaggcctg cggaaatgaa cctttatgta cttaaagtta tacagaaaat
     2641 agaataaaat taataccaaa cttg
//
LOCUS       XM_032611152            2797 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X14, mRNA.
ACCESSION   XM_032611152
VERSION     XM_032611152.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2797
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 28 long SRA reads, 9 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             291..1715
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X3"
                     /protein_id="XP_032467043.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKGTTPYVQ
                     AFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSD
                     LLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDAA
                     MFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELSG
                     LPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSDD
                     LKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQE
                     NVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIIN
                     SRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNEF
                     PVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    303..473
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1239..1706
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 gaggcagatc tctgaggtga gtgtgcgcgg cggggtaggg actctggtcc tctccgcggc
       61 ccactggccc ctggcgttgt taatgaccct tctggcctag gtgcatgcgg tgagcccccc
      121 tgaggcggcc ggcgccggga ccctcaggcc gacccgggat cctgggcgcg gtctcttgtg
      181 gggccgcggt gaccaactga gccccgctct cctggggagg ccccttccgc tggacttcgc
      241 ggttctggcc atcagcctca gcggaggcct gattcctaag gtgctacatt atggctgaca
      301 tgcaaaatct ggtagaaagg ttggagagag cagtgggccg cctggaggca gtctcccagg
      361 cctgtgacat gcactgtggg tatgcagaca gtgctgcaaa aggaacgact ccatatgtgc
      421 aagcatttga ctcactcttg gccggtcctg tggcagagta cctcaagatc agtaaagaga
      481 ttgggggaga tgtgcagaag catgcggaga tggtccacac gggtctgaag ttggagcgag
      541 cgctcttggt tacagcctct caatgccagc agccagcagg taataagctt tccgatttgt
      601 tggcacccat ctccgagcag atccaagaag tgataacctt tcgggagaag aacagaggca
      661 gcaagttgtt caatcatctg tcaggtgtca gcgaaagtat ccaggccctg ggctgggtgg
      721 ctatggctcc caagcctggt ccctatgtga aggaaatgaa tgatgctgcc atgttttata
      781 caaaccgagt tctcaaggag tacaaagatg tggataagaa gcatgtggac tgggtcaaag
      841 cttacttgag tatatggaca gagctgcagg cttacattaa ggagttccat gccactggcc
      901 tggcctggag caaaacgggg cctgtggcaa aagaactgag tggattgcca tcgggaccct
      961 ctgctggatc gggtcctcct ccccccccac caggcccacc tccccctcca gccgccacca
     1021 gttcaggctc agatgagtct gcttcacgct cagcactgtt tgcacagatt aatcaggggg
     1081 agagcatcac acatgccctg aaacatgtat ctgatgactt gaagactcac aagaaccctg
     1141 ccttgaaggc tcagagtgct ccagtacgaa gtggccccaa accattctct gcatctaaac
     1201 caggagtcag tccttccccc aaaccagtca caaagaagga gccagctcta cttgaactgg
     1261 agggcaagaa gtggagagtg gaaaatcagg agaatgtttc caacctggtg atagatgaca
     1321 cagagctgaa acaggtggct tacatattca agtgtgtcaa ctcaacattg caaatcaagg
     1381 gcaaaattaa ctccattaca gtagataact gtaagaaact cggtctggtg ttcgatgacg
     1441 tggtgggcat tgtggagata atcaatagta gggatgtcaa agttcaggta atgggtaaag
     1501 tgccaaccat ttccatcaac aaaacagatg gctgccacgt ttacctgagc aagaattcac
     1561 tggattgtga gatagtcagt gccaaatctt ctgagatgaa tgtcctcatt cctacagaag
     1621 gcgatgactt caatgagttc ccagtccctg agcagttcaa gaccatatgg aatgggcgga
     1681 agttggtcac cacagtgaca gaaattgctg gataagcgaa gtgccactgg gttctttgcc
     1741 ctctccctca caccgtggga taaatctgta tcaagacggt tcttttttag atttcctcta
     1801 cctttctgct cttaaactgc ttctctgctt tgagaagcac agctacctgc cttcactgaa
     1861 atatacctca ggctgagatt tggggtggga tagcaggtct ttgatcttct gcaggaaggt
     1921 gcagcttttc cgtgtcagct caaccataca gccagtccat tcttcaggaa ctgcacatca
     1981 ggacaggtgt gttttagctt tcagcctttg gggttatttg gggaaggata aagcagtccc
     2041 caggaattaa cagatcacaa tgttcacaca agttaatctt tttctaacaa tgagtgtgaa
     2101 ggtagcagaa gctggtgtga tcctagttgg ttcttctaac ttaaactaat tttcactatt
     2161 gacaagtgag gcaagggttt gcacgggacc aaaggctgaa gcttggccat ctagcattcc
     2221 aagcaaaatg atttcctgta agcattcctt ttcttctgca ttccatcctg catctgcccg
     2281 aacctgagat agtaggttgt cctgtgttag ctgctgtggt ggtgccctgc acccaggcca
     2341 gctaaaggag tcttggaccc ttcctctctc tggggcccct gcccagcacc ttcctacaga
     2401 gatgacttaa aaagagagga aaaaaaaagg aaaaccacac cattcccagg aatctggctt
     2461 cccttcctcc ttccatgctg ggtgcccatc atccgtcttc attgcttcct tgccctgtca
     2521 tgctcaacag cttttggctt ctgtcagggc acctgcacag aggactaaaa tctccattgc
     2581 aggctggttt taggtcttgt gtaaaaatct tgcacagcat tgctaatgta aatttcagtt
     2641 tttcctctag gacaaacact ttaccaaaat atgcaacttt ttttggtggg aagagagatt
     2701 gtcctgtgat ttctacccat ttcctgaggc ctgcggaaat gaacctttat gtacttaaag
     2761 ttatacagaa aatagaataa aattaatacc aaacttg
//
LOCUS       XM_032611160            4501 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X15, mRNA.
ACCESSION   XM_032611160
VERSION     XM_032611160.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4501
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4501
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 28 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             1995..3419
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X3"
                     /protein_id="XP_032467051.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKGTTPYVQ
                     AFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSD
                     LLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDAA
                     MFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELSG
                     LPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSDD
                     LKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQE
                     NVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIIN
                     SRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNEF
                     PVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    2007..2177
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    2943..3410
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 gactctcaac cactgcgcca ccagggaagc cccaagaaca acaatcttaa ccactatact
       61 gtactgctta acagtttcca ggttactatc ttgattgctg gtagtgctgg attactgaga
      121 cagtgagtct gggggagcag tgctagggaa aatgatgagt tctgttttgg acatttcaga
      181 tgtcctttgg gacatccagg tagagatgtc taggtggaat tctgaatccc agaaggatgg
      241 cctgagctgg atacattgct ctgggagttg ttagtctata ggtggttgtg gtggtatcac
      301 tcagcaagtg gactggatag taatgcgata atggtagttg acagctttgg agtggacatg
      361 accacctaaa gaacgaatat gcatacataa agaataagac aaggtgtgtc ttttggtcct
      421 tcaattctag acattctttc ccataacatc tcaaatttca ctccaccccc accaaaaaca
      481 aaaaactagg aactgttctc ctatatttga ttagtggtgg aatgagatta gctataatga
      541 tagctgtttt gtcttttctc attctgctta agttaaacag cagaaccata gcttgtttag
      601 cattgaaagc ttaaagtaca agtaaaagat ggaaaagaag gaaccaaaat ccatgaagct
      661 gtattattaa gcttttcaga ttggtaagta ttcacgaacc ctggcagcct ttagagatgc
      721 ttgtactgtg ttatcatgtt cacactggcc ggaacttata gtatccatta tgtctgaagg
      781 aacatgtttt ataacagaat gggtggtatt tattaatgca aggtagcttg ggagtttatt
      841 gcagtcactg ccttttcccc tgggatttac agtgtggtgg attatatgtg tctgtccctg
      901 gatagtatcc agaatgaaca gggcagcagt ttggatattt gggtgattgt gccataacat
      961 aagggagagt atattggata cttctagtct gctccatagt ctgttccatt ttgagtagag
     1021 tacagatttg gaggcttctg ctacctcttc aggccggcga atgcaaaggt ttatttggtt
     1081 cgcattctta tttttttcct tgattctttt ttaaacaaca ttctctggca aatcaccggg
     1141 ctctgagaga tcagagcctg tacacggaaa agaatggaca gggatgatat tgtcttcctt
     1201 agtttatctt ttgagttgct tctctcttcc acagggaaga caatgtgtgt taaatgagat
     1261 attctgtcat gtagctgtct ttgagggaat tataattgct atggtcattt taggtggctt
     1321 caagggagtt gagttcattc ggcttcagtt gcctgaataa attaatgctt tgaaatggca
     1381 tctctccaag tcaagtcttt gattgtgatt acactgactg atttttatga gatcacctat
     1441 aatctaaagc actttatgtc gatgtatatt gataacatta acactcattt atgtatattt
     1501 gtgggtaact ttcagaaccc ttgtctctgg agttctggga tactatactt caggttcatt
     1561 aacttctaaa atatttattg aacaccttct acctgccagg tagtggtcta gatggtagag
     1621 gataaacttg tttaggaaac aaaccagaga aggtcccttc tcttttggag cttactttct
     1681 ttaggatatt agacattgaa tgaggctagt tcagataagt tggtacttgt gaaagatctg
     1741 taacaagctc tctgggtgtg tctgttctcc ttccctgctg catatccaga tcctacccac
     1801 cctcatttga agccggctca attggaagct ttgccataat agccttatct gatccttcca
     1861 gctgatatat tcttcccctc tctgaaatcc tgtgttattc tctctgcaac ttatgtcacc
     1921 ttaatttttt tttctatttg ttttacagtt gttagtgcac atgtgaagtc ttctctatta
     1981 gactgtgcta cattatggct gacatgcaaa atctggtaga aaggttggag agagcagtgg
     2041 gccgcctgga ggcagtctcc caggcctgtg acatgcactg tgggtatgca gacagtgctg
     2101 caaaaggaac gactccatat gtgcaagcat ttgactcact cttggccggt cctgtggcag
     2161 agtacctcaa gatcagtaaa gagattgggg gagatgtgca gaagcatgcg gagatggtcc
     2221 acacgggtct gaagttggag cgagcgctct tggttacagc ctctcaatgc cagcagccag
     2281 caggtaataa gctttccgat ttgttggcac ccatctccga gcagatccaa gaagtgataa
     2341 cctttcggga gaagaacaga ggcagcaagt tgttcaatca tctgtcaggt gtcagcgaaa
     2401 gtatccaggc cctgggctgg gtggctatgg ctcccaagcc tggtccctat gtgaaggaaa
     2461 tgaatgatgc tgccatgttt tatacaaacc gagttctcaa ggagtacaaa gatgtggata
     2521 agaagcatgt ggactgggtc aaagcttact tgagtatatg gacagagctg caggcttaca
     2581 ttaaggagtt ccatgccact ggcctggcct ggagcaaaac ggggcctgtg gcaaaagaac
     2641 tgagtggatt gccatcggga ccctctgctg gatcgggtcc tcctcccccc ccaccaggcc
     2701 cacctccccc tccagccgcc accagttcag gctcagatga gtctgcttca cgctcagcac
     2761 tgtttgcaca gattaatcag ggggagagca tcacacatgc cctgaaacat gtatctgatg
     2821 acttgaagac tcacaagaac cctgccttga aggctcagag tgctccagta cgaagtggcc
     2881 ccaaaccatt ctctgcatct aaaccaggag tcagtccttc ccccaaacca gtcacaaaga
     2941 aggagccagc tctacttgaa ctggagggca agaagtggag agtggaaaat caggagaatg
     3001 tttccaacct ggtgatagat gacacagagc tgaaacaggt ggcttacata ttcaagtgtg
     3061 tcaactcaac attgcaaatc aagggcaaaa ttaactccat tacagtagat aactgtaaga
     3121 aactcggtct ggtgttcgat gacgtggtgg gcattgtgga gataatcaat agtagggatg
     3181 tcaaagttca ggtaatgggt aaagtgccaa ccatttccat caacaaaaca gatggctgcc
     3241 acgtttacct gagcaagaat tcactggatt gtgagatagt cagtgccaaa tcttctgaga
     3301 tgaatgtcct cattcctaca gaaggcgatg acttcaatga gttcccagtc cctgagcagt
     3361 tcaagaccat atggaatggg cggaagttgg tcaccacagt gacagaaatt gctggataag
     3421 cgaagtgcca ctgggttctt tgccctctcc ctcacaccgt gggataaatc tgtatcaaga
     3481 cggttctttt ttagatttcc tctacctttc tgctcttaaa ctgcttctct gctttgagaa
     3541 gcacagctac ctgccttcac tgaaatatac ctcaggctga gatttggggt gggatagcag
     3601 gtctttgatc ttctgcagga aggtgcagct tttccgtgtc agctcaacca tacagccagt
     3661 ccattcttca ggaactgcac atcaggacag gtgtgtttta gctttcagcc tttggggtta
     3721 tttggggaag gataaagcag tccccaggaa ttaacagatc acaatgttca cacaagttaa
     3781 tctttttcta acaatgagtg tgaaggtagc agaagctggt gtgatcctag ttggttcttc
     3841 taacttaaac taattttcac tattgacaag tgaggcaagg gtttgcacgg gaccaaaggc
     3901 tgaagcttgg ccatctagca ttccaagcaa aatgatttcc tgtaagcatt ccttttcttc
     3961 tgcattccat cctgcatctg cccgaacctg agatagtagg ttgtcctgtg ttagctgctg
     4021 tggtggtgcc ctgcacccag gccagctaaa ggagtcttgg acccttcctc tctctggggc
     4081 ccctgcccag caccttccta cagagatgac ttaaaaagag aggaaaaaaa aaggaaaacc
     4141 acaccattcc caggaatctg gcttcccttc ctccttccat gctgggtgcc catcatccgt
     4201 cttcattgct tccttgccct gtcatgctca acagcttttg gcttctgtca gggcacctgc
     4261 acagaggact aaaatctcca ttgcaggctg gttttaggtc ttgtgtaaaa atcttgcaca
     4321 gcattgctaa tgtaaatttc agtttttcct ctaggacaaa cactttacca aaatatgcaa
     4381 ctttttttgg tgggaagaga gattgtcctg tgatttctac ccatttcctg aggcctgcgg
     4441 aaatgaacct ttatgtactt aaagttatac agaaaataga ataaaattaa taccaaactt
     4501 g
//
LOCUS       XM_032611168            2676 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X16, mRNA.
ACCESSION   XM_032611168
VERSION     XM_032611168.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2676
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 28 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743015"
     CDS             170..1594
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X3"
                     /protein_id="XP_032467059.1"
                     /db_xref="GeneID:116743015"
                     /translation="MADMQNLVERLERAVGRLEAVSQACDMHCGYADSAAKGTTPYVQ
                     AFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSD
                     LLAPISEQIQEVITFREKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDAA
                     MFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELSG
                     LPSGPSAGSGPPPPPPGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSDD
                     LKTHKNPALKAQSAPVRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQE
                     NVSNLVIDDTELKQVAYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIIN
                     SRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNEF
                     PVPEQFKTIWNGRKLVTTVTEIAG"
     misc_feature    182..352
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) N terminal;
                     Region: CAP_N; pfam01213"
                     /db_xref="CDD:460113"
     misc_feature    1118..1585
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 ccggtggggg tgccgcgccc agtgagggca cggaagtggg tcgcgcgaag attgctgggc
       61 ggttcttgcc ggaagtggag agcggctgat cgcagtcccg aggtgaggca gatctctgag
      121 ttgttagtgc acatgtgaag tcttctctat tagactcagg tgctacatta tggctgacat
      181 gcaaaatctg gtagaaaggt tggagagagc agtgggccgc ctggaggcag tctcccaggc
      241 ctgtgacatg cactgtgggt atgcagacag tgctgcaaaa ggaacgactc catatgtgca
      301 agcatttgac tcactcttgg ccggtcctgt ggcagagtac ctcaagatca gtaaagagat
      361 tgggggagat gtgcagaagc atgcggagat ggtccacacg ggtctgaagt tggagcgagc
      421 gctcttggtt acagcctctc aatgccagca gccagcaggt aataagcttt ccgatttgtt
      481 ggcacccatc tccgagcaga tccaagaagt gataaccttt cgggagaaga acagaggcag
      541 caagttgttc aatcatctgt caggtgtcag cgaaagtatc caggccctgg gctgggtggc
      601 tatggctccc aagcctggtc cctatgtgaa ggaaatgaat gatgctgcca tgttttatac
      661 aaaccgagtt ctcaaggagt acaaagatgt ggataagaag catgtggact gggtcaaagc
      721 ttacttgagt atatggacag agctgcaggc ttacattaag gagttccatg ccactggcct
      781 ggcctggagc aaaacggggc ctgtggcaaa agaactgagt ggattgccat cgggaccctc
      841 tgctggatcg ggtcctcctc cccccccacc aggcccacct ccccctccag ccgccaccag
      901 ttcaggctca gatgagtctg cttcacgctc agcactgttt gcacagatta atcaggggga
      961 gagcatcaca catgccctga aacatgtatc tgatgacttg aagactcaca agaaccctgc
     1021 cttgaaggct cagagtgctc cagtacgaag tggccccaaa ccattctctg catctaaacc
     1081 aggagtcagt ccttccccca aaccagtcac aaagaaggag ccagctctac ttgaactgga
     1141 gggcaagaag tggagagtgg aaaatcagga gaatgtttcc aacctggtga tagatgacac
     1201 agagctgaaa caggtggctt acatattcaa gtgtgtcaac tcaacattgc aaatcaaggg
     1261 caaaattaac tccattacag tagataactg taagaaactc ggtctggtgt tcgatgacgt
     1321 ggtgggcatt gtggagataa tcaatagtag ggatgtcaaa gttcaggtaa tgggtaaagt
     1381 gccaaccatt tccatcaaca aaacagatgg ctgccacgtt tacctgagca agaattcact
     1441 ggattgtgag atagtcagtg ccaaatcttc tgagatgaat gtcctcattc ctacagaagg
     1501 cgatgacttc aatgagttcc cagtccctga gcagttcaag accatatgga atgggcggaa
     1561 gttggtcacc acagtgacag aaattgctgg ataagcgaag tgccactggg ttctttgccc
     1621 tctccctcac accgtgggat aaatctgtat caagacggtt cttttttaga tttcctctac
     1681 ctttctgctc ttaaactgct tctctgcttt gagaagcaca gctacctgcc ttcactgaaa
     1741 tatacctcag gctgagattt ggggtgggat agcaggtctt tgatcttctg caggaaggtg
     1801 cagcttttcc gtgtcagctc aaccatacag ccagtccatt cttcaggaac tgcacatcag
     1861 gacaggtgtg ttttagcttt cagcctttgg ggttatttgg ggaaggataa agcagtcccc
     1921 aggaattaac agatcacaat gttcacacaa gttaatcttt ttctaacaat gagtgtgaag
     1981 gtagcagaag ctggtgtgat cctagttggt tcttctaact taaactaatt ttcactattg
     2041 acaagtgagg caagggtttg cacgggacca aaggctgaag cttggccatc tagcattcca
     2101 agcaaaatga tttcctgtaa gcattccttt tcttctgcat tccatcctgc atctgcccga
     2161 acctgagata gtaggttgtc ctgtgttagc tgctgtggtg gtgccctgca cccaggccag
     2221 ctaaaggagt cttggaccct tcctctctct ggggcccctg cccagcacct tcctacagag
     2281 atgacttaaa aagagaggaa aaaaaaagga aaaccacacc attcccagga atctggcttc
     2341 ccttcctcct tccatgctgg gtgcccatca tccgtcttca ttgcttcctt gccctgtcat
     2401 gctcaacagc ttttggcttc tgtcagggca cctgcacaga ggactaaaat ctccattgca
     2461 ggctggtttt aggtcttgtg taaaaatctt gcacagcatt gctaatgtaa atttcagttt
     2521 ttcctctagg acaaacactt taccaaaata tgcaactttt tttggtggga agagagattg
     2581 tcctgtgatt tctacccatt tcctgaggcc tgcggaaatg aacctttatg tacttaaagt
     2641 tatacagaaa atagaataaa attaatacca aacttg
//
LOCUS       XM_032611174            2415 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclase associated actin cytoskeleton
            regulatory protein 1 (CAP1), transcript variant X17, mRNA.
ACCESSION   XM_032611174
VERSION     XM_032611174.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2415
                     /gene="CAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743015"
     CDS             128..1333
                     /gene="CAP1"
                     /codon_start=1
                     /product="adenylyl cyclase-associated protein 1 isoform
                     X4"
                     /protein_id="XP_032467065.1"
                     /db_xref="GeneID:116743015"
                     /translation="MVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVITF
                     REKNRGSKLFNHLSGVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVD
                     KKHVDWVKAYLSIWTELQAYIKEFHATGLAWSKTGPVAKELSGLPSGPSAGSGPPPPP
                     PGPPPPPAATSSGSDESASRSALFAQINQGESITHALKHVSDDLKTHKNPALKAQSAP
                     VRSGPKPFSASKPGVSPSPKPVTKKEPALLELEGKKWRVENQENVSNLVIDDTELKQV
                     AYIFKCVNSTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQVMGKVPTI
                     SINKTDGCHVYLSKNSLDCEIVSAKSSEMNVLIPTEGDDFNEFPVPEQFKTIWNGRKL
                     VTTVTEIAG"
     misc_feature    857..1324
                     /gene="CAP1"
                     /note="Adenylate cyclase associated (CAP) C terminal;
                     Region: CAP_C; pfam08603"
                     /db_xref="CDD:462532"
ORIGIN      
        1 tccggtgggg gtgccgcgcc cagtgagggc acggaagtgg gtcgcgcgaa gattgctggg
       61 cggttcttgc cggaagtgga gagcggctga tcgcagtccc gaggtgaggc agatctctga
      121 ggcggagatg gtccacacgg gtctgaagtt ggagcgagcg ctcttggtta cagcctctca
      181 atgccagcag ccagcaggta ataagctttc cgatttgttg gcacccatct ccgagcagat
      241 ccaagaagtg ataacctttc gggagaagaa cagaggcagc aagttgttca atcatctgtc
      301 aggtgtcagc gaaagtatcc aggccctggg ctgggtggct atggctccca agcctggtcc
      361 ctatgtgaag gaaatgaatg atgctgccat gttttataca aaccgagttc tcaaggagta
      421 caaagatgtg gataagaagc atgtggactg ggtcaaagct tacttgagta tatggacaga
      481 gctgcaggct tacattaagg agttccatgc cactggcctg gcctggagca aaacggggcc
      541 tgtggcaaaa gaactgagtg gattgccatc gggaccctct gctggatcgg gtcctcctcc
      601 ccccccacca ggcccacctc cccctccagc cgccaccagt tcaggctcag atgagtctgc
      661 ttcacgctca gcactgtttg cacagattaa tcagggggag agcatcacac atgccctgaa
      721 acatgtatct gatgacttga agactcacaa gaaccctgcc ttgaaggctc agagtgctcc
      781 agtacgaagt ggccccaaac cattctctgc atctaaacca ggagtcagtc cttcccccaa
      841 accagtcaca aagaaggagc cagctctact tgaactggag ggcaagaagt ggagagtgga
      901 aaatcaggag aatgtttcca acctggtgat agatgacaca gagctgaaac aggtggctta
      961 catattcaag tgtgtcaact caacattgca aatcaagggc aaaattaact ccattacagt
     1021 agataactgt aagaaactcg gtctggtgtt cgatgacgtg gtgggcattg tggagataat
     1081 caatagtagg gatgtcaaag ttcaggtaat gggtaaagtg ccaaccattt ccatcaacaa
     1141 aacagatggc tgccacgttt acctgagcaa gaattcactg gattgtgaga tagtcagtgc
     1201 caaatcttct gagatgaatg tcctcattcc tacagaaggc gatgacttca atgagttccc
     1261 agtccctgag cagttcaaga ccatatggaa tgggcggaag ttggtcacca cagtgacaga
     1321 aattgctgga taagcgaagt gccactgggt tctttgccct ctccctcaca ccgtgggata
     1381 aatctgtatc aagacggttc ttttttagat ttcctctacc tttctgctct taaactgctt
     1441 ctctgctttg agaagcacag ctacctgcct tcactgaaat atacctcagg ctgagatttg
     1501 gggtgggata gcaggtcttt gatcttctgc aggaaggtgc agcttttccg tgtcagctca
     1561 accatacagc cagtccattc ttcaggaact gcacatcagg acaggtgtgt tttagctttc
     1621 agcctttggg gttatttggg gaaggataaa gcagtcccca ggaattaaca gatcacaatg
     1681 ttcacacaag ttaatctttt tctaacaatg agtgtgaagg tagcagaagc tggtgtgatc
     1741 ctagttggtt cttctaactt aaactaattt tcactattga caagtgaggc aagggtttgc
     1801 acgggaccaa aggctgaagc ttggccatct agcattccaa gcaaaatgat ttcctgtaag
     1861 cattcctttt cttctgcatt ccatcctgca tctgcccgaa cctgagatag taggttgtcc
     1921 tgtgttagct gctgtggtgg tgccctgcac ccaggccagc taaaggagtc ttggaccctt
     1981 cctctctctg gggcccctgc ccagcacctt cctacagaga tgacttaaaa agagaggaaa
     2041 aaaaaaggaa aaccacacca ttcccaggaa tctggcttcc cttcctcctt ccatgctggg
     2101 tgcccatcat ccgtcttcat tgcttccttg ccctgtcatg ctcaacagct tttggcttct
     2161 gtcagggcac ctgcacagag gactaaaatc tccattgcag gctggtttta ggtcttgtgt
     2221 aaaaatcttg cacagcattg ctaatgtaaa tttcagtttt tcctctagga caaacacttt
     2281 accaaaatat gcaacttttt ttggtgggaa gagagattgt cctgtgattt ctacccattt
     2341 cctgaggcct gcggaaatga acctttatgt acttaaagtt atacagaaaa tagaataaaa
     2401 ttaataccaa acttg
//
LOCUS       XM_032611188            2291 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus palmitoyl-protein thioesterase 1 (PPT1),
            transcript variant X1, mRNA.
ACCESSION   XM_032611188
VERSION     XM_032611188.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2291
                     /gene="PPT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743060"
     CDS             17..937
                     /gene="PPT1"
                     /codon_start=1
                     /product="palmitoyl-protein thioesterase 1 isoform X1"
                     /protein_id="XP_032467079.1"
                     /db_xref="GeneID:116743060"
                     /translation="MASSSSLWLLALAFLPGSCASLALGHLDPPAPLPLVIWHGMGDS
                     CCNPLSMGAVKKMVEKKIPGIYVLSLEIGKTLVEDVENSFFLNVNSQVTTVCQILAKD
                     PELQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHIC
                     DLIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDIYRNHSIFLADINQERGVNESYKKN
                     LMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLKAMDN
                     AGQLVFLALEGDHLQLSEAWFYAHIIPFLE"
     misc_feature    116..883
                     /gene="PPT1"
                     /note="Palmitoyl protein thioesterase; Region:
                     Palm_thioest; pfam02089"
                     /db_xref="CDD:460441"
ORIGIN      
        1 atgtgattga gtcaagatgg cgtcgtccag ctctttgtgg ctcttggctc tcgctttcct
       61 gccggggtcc tgcgcttccc tggcgctggg gcatcttgac ccgccggccc cgctgcctct
      121 ggtgatctgg catgggatgg gagacagctg ttgtaatccc ttaagcatgg gcgctgttaa
      181 gaaaatggtc gagaagaaaa tacctggaat ttacgtcttg tctttagaga ttgggaagac
      241 cctggtagag gatgtggaga acagcttctt tttgaatgtc aactcccaag taacaacagt
      301 gtgtcagatt cttgctaagg atcctgaatt gcagcaaggc tacaatgcta tgggattctc
      361 ccagggaggc caatttctga gggcagtggc tcagagatgc ccatcacctc ctatgatcaa
      421 tctcatatca gttgggggac aacatcaagg tgtttttgga ctccctcggt gcccaggaga
      481 gagctctcac atctgtgact tgatcagaaa aacactgaat gctggagctt acaacaaagc
      541 tatacaggaa cgcctggtac aagcagaata ctggcacgac cccataaagg aggacatata
      601 ccgcaaccac agcatcttct tggcagatat taatcaggag agaggtgtca atgagtccta
      661 caagaaaaac ctgatggccc tgaagaagtt tgtgatggtg aaattcctca acgattccat
      721 tgtggacccc gtggattctg agtggtttgg attttacaga agtggccaag ccaaggaaac
      781 cattccctta caggagagca ccctgtacac acaggaccgc ctggggctaa aggcaatgga
      841 caacgcagga cagctggtgt tcctggctct cgaaggggac catcttcaac tgtctgaagc
      901 atggttttat gcccacatca tacccttcct tgagtgaaac ccttgtagtt tgcaccagag
      961 ctcagggaac ccctcacact tccaaaccag ttccctccac gcccaagcct gagctcagat
     1021 ccagctagaa actaatcctt ctcttgtcac cgtctaacat gccctgcttg gaaagatcca
     1081 agataggaat cttatccttt gcctcatcct atcagcatat ggtgttgaat gcaagtttaa
     1141 ttagctaata accacggaga ttgttttaca accctttgat gtggtcagtg ttttaggaat
     1201 caggagtttg ctgcaggtca gtggcagaac tgtgcccagg cccggaagag actaaacaaa
     1261 ctaaaccaat gagatagagt ccaaggcaga tgccttcctc aggaaaatct agccacatct
     1321 caagccaaga ggccagtacc cagacctaag gtagtcacat aaatgctttc tcagttgtgc
     1381 tggtggagat ttgaccagtg cttggagaag tattgcttgg atgatgtgtc cacataattt
     1441 cttgaggctg tcctcctctt tgtgttgctt tctgtggtgt cgtagctatt tattattaga
     1501 caaattcggg cggcccacca tcttcccttg gtagcacttt tttttgtctc ttcaggtagt
     1561 gataaatttg ttgctctgtc acaaaaggag ggaactagca cccaattgga ttgcttaagg
     1621 gaggaagtgt acatattgct taacttagat ggggtggggg aggtttaaag aaaaatagga
     1681 ggaggcagtt agttctttcc attccatcct tgatgaacct gccctttcta aatatgacta
     1741 gtggtgtgga ttctagagtc actttattgc tggcattagc aaagaatggg aggaaaaccg
     1801 cgaagagatc aggctttcta acttccatct caaaaatttg agattaccgc acacttcaaa
     1861 ctgcttctga tgtgttctgt gaaaaaaaga gtgctcaaaa agcttagaga gtattccata
     1921 tcccttttct cctcttgaag atcaacccac cttagaatat taaggactct gaaaattcct
     1981 gttacagtaa agaaaactaa ccttaatcta ccgtttccca cgctatttga acatggacgt
     2041 cttagccccc aatccgttat cccatgaaaa cctagcaaca ctttttggaa gattgttctg
     2101 cggaatgcca gtttacggaa gtgggtagct atacttgagg gaagcacttt gctagtgctg
     2161 caaagtttac cctctgtgat ttttctttca cctctctcaa gacttttcaa ctaagaggat
     2221 gaaaggcaag aagtggggac gtgtgaaaat aattttatga agttgtttaa aataaagagt
     2281 agtttcttat c
//
LOCUS       XM_032611198            2366 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus palmitoyl-protein thioesterase 1 (PPT1),
            transcript variant X2, mRNA.
ACCESSION   XM_032611198
VERSION     XM_032611198.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2366
                     /gene="PPT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 95% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743060"
     CDS             17..907
                     /gene="PPT1"
                     /codon_start=1
                     /product="palmitoyl-protein thioesterase 1 isoform X2"
                     /protein_id="XP_032467089.1"
                     /db_xref="GeneID:116743060"
                     /translation="MASSSSLWLLALAFLPGSCASLALGHLDPPAPLPLVIWHGMGDS
                     CCNPLSMGAVKKMVEKKIPGIYVLSLEIGKTLVEDVENSFFLNVNSQVTTVCQILAKD
                     PELQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHIC
                     DLIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDIYRNHSIFLADINQERGVNESYKKN
                     LMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQIPPSNFRDQL
                     SSLGFSPASGAPSWVRTAWG"
     misc_feature    116..814
                     /gene="PPT1"
                     /note="Palmitoyl protein thioesterase; Region:
                     Palm_thioest; pfam02089"
                     /db_xref="CDD:460441"
ORIGIN      
        1 atgtgattga gtcaagatgg cgtcgtccag ctctttgtgg ctcttggctc tcgctttcct
       61 gccggggtcc tgcgcttccc tggcgctggg gcatcttgac ccgccggccc cgctgcctct
      121 ggtgatctgg catgggatgg gagacagctg ttgtaatccc ttaagcatgg gcgctgttaa
      181 gaaaatggtc gagaagaaaa tacctggaat ttacgtcttg tctttagaga ttgggaagac
      241 cctggtagag gatgtggaga acagcttctt tttgaatgtc aactcccaag taacaacagt
      301 gtgtcagatt cttgctaagg atcctgaatt gcagcaaggc tacaatgcta tgggattctc
      361 ccagggaggc caatttctga gggcagtggc tcagagatgc ccatcacctc ctatgatcaa
      421 tctcatatca gttgggggac aacatcaagg tgtttttgga ctccctcggt gcccaggaga
      481 gagctctcac atctgtgact tgatcagaaa aacactgaat gctggagctt acaacaaagc
      541 tatacaggaa cgcctggtac aagcagaata ctggcacgac cccataaagg aggacatata
      601 ccgcaaccac agcatcttct tggcagatat taatcaggag agaggtgtca atgagtccta
      661 caagaaaaac ctgatggccc tgaagaagtt tgtgatggtg aaattcctca acgattccat
      721 tgtggacccc gtggattctg agtggtttgg attttacaga agtggccaag ccaaggaaac
      781 cattccctta caggagagca ccctgtacac acagattcct ccaagtaatt tccgagacca
      841 attgtcatct cttggctttt ctcctgcatc tggtgcccca tcttgggtga ggaccgcctg
      901 gggctaaagg caatggacaa cgcaggacag ctggtgttcc tggctctcga aggggaccat
      961 cttcaactgt ctgaagcatg gttttatgcc cacatcatac ccttccttga gtgaaaccct
     1021 tgtagtttgc accagagctc agggaacccc tcacacttcc aaaccagttc cctccacgcc
     1081 caagcctgag ctcagatcca gctagaaact aatccttctc ttgtcaccgt ctaacatgcc
     1141 ctgcttggaa agatccaaga taggaatctt atcctttgcc tcatcctatc agcatatggt
     1201 gttgaatgca agtttaatta gctaataacc acggagattg ttttacaacc ctttgatgtg
     1261 gtcagtgttt taggaatcag gagtttgctg caggtcagtg gcagaactgt gcccaggccc
     1321 ggaagagact aaacaaacta aaccaatgag atagagtcca aggcagatgc cttcctcagg
     1381 aaaatctagc cacatctcaa gccaagaggc cagtacccag acctaaggta gtcacataaa
     1441 tgctttctca gttgtgctgg tggagatttg accagtgctt ggagaagtat tgcttggatg
     1501 atgtgtccac ataatttctt gaggctgtcc tcctctttgt gttgctttct gtggtgtcgt
     1561 agctatttat tattagacaa attcgggcgg cccaccatct tcccttggta gcactttttt
     1621 ttgtctcttc aggtagtgat aaatttgttg ctctgtcaca aaaggaggga actagcaccc
     1681 aattggattg cttaagggag gaagtgtaca tattgcttaa cttagatggg gtgggggagg
     1741 tttaaagaaa aataggagga ggcagttagt tctttccatt ccatccttga tgaacctgcc
     1801 ctttctaaat atgactagtg gtgtggattc tagagtcact ttattgctgg cattagcaaa
     1861 gaatgggagg aaaaccgcga agagatcagg ctttctaact tccatctcaa aaatttgaga
     1921 ttaccgcaca cttcaaactg cttctgatgt gttctgtgaa aaaaagagtg ctcaaaaagc
     1981 ttagagagta ttccatatcc cttttctcct cttgaagatc aacccacctt agaatattaa
     2041 ggactctgaa aattcctgtt acagtaaaga aaactaacct taatctaccg tttcccacgc
     2101 tatttgaaca tggacgtctt agcccccaat ccgttatccc atgaaaacct agcaacactt
     2161 tttggaagat tgttctgcgg aatgccagtt tacggaagtg ggtagctata cttgagggaa
     2221 gcactttgct agtgctgcaa agtttaccct ctgtgatttt tctttcacct ctctcaagac
     2281 ttttcaacta agaggatgaa aggcaagaag tggggacgtg tgaaaataat tttatgaagt
     2341 tgtttaaaat aaagagtagt ttctta
//
LOCUS       XR_004346669            2444 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus palmitoyl-protein thioesterase 1 (PPT1),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004346669
VERSION     XR_004346669.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2444
                     /gene="PPT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 92% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743060"
     misc_RNA        1..2444
                     /gene="PPT1"
                     /product="palmitoyl-protein thioesterase 1, transcript
                     variant X3"
                     /db_xref="GeneID:116743060"
ORIGIN      
        1 gaacgcggtc atgtgattga gtcaagatgg cgtcgtccag ctctttgtgg ctcttggctc
       61 tcgctttcct gccggggtcc tgcgcttccc tggcgctggg gcatcttgac ccgccggccc
      121 cgctgcctct ggtgatctgg catgggatgg gagacagctg ttgtaatccc ttaagcatgg
      181 gcgctgttaa gaaaatggtc gagaagaaaa tacctggaat ttacgtcttg tctttagaga
      241 ttgggaagac cctggtagag gatgtggaga acagcttctt tttgaatgtc aactcccaag
      301 taacaacagt gtgtcagatt cttgctaagg atcctgaatt gcagcaaggc tacaatgcta
      361 tgggattctc ccagggaggc caatttctga gggcagtggc tcagagatgc ccatcacctc
      421 ctatgatcaa tctcatatca gttgggggac aacatcaagg tgtttttgga ctccctcggt
      481 gcccaggaga gagctctcac atctgtgact tgatcagaaa aacactgaat gctggagctt
      541 acaacaaagc tatacaggaa cgcctggtac aagcagaata ctggcacgac cccataaagg
      601 aggacatata ccgcaaccac agcatcttct tggcagatat taatcaggag agaggtgtca
      661 atgagtccta caagaaaaac ctgatggccc tgaagaagtt tgtgatggtg aaattcctca
      721 acgattccat tgtggacccc gtggattctg agtggtttgg attttacaga agtggccaag
      781 ccaaggaaac cattccctta caggagagca ccctgtacac acagcacagc aggtactcaa
      841 gaagcgtctg actcgtgtct gatgtggacg aggcttgtta ggctgttgac tgttgcacta
      901 gcttatgagg cattggttta ccgaagccta catcctgaag gctgaaggac ctgtacgtca
      961 tgttttcagg accgcctggg gctaaaggca atggacaacg caggacagct ggtgttcctg
     1021 gctctcgaag gggaccatct tcaactgtct gaagcatggt tttatgccca catcataccc
     1081 ttccttgagt gaaacccttg tagtttgcac cagagctcag ggaacccctc acacttccaa
     1141 accagttccc tccacgccca agcctgagct cagatccagc tagaaactaa tccttctctt
     1201 gtcaccgtct aacatgccct gcttggaaag atccaagata ggaatcttat cctttgcctc
     1261 atcctatcag catatggtgt tgaatgcaag tttaattagc taataaccac ggagattgtt
     1321 ttacaaccct ttgatgtggt cagtgtttta ggaatcagga gtttgctgca ggtcagtggc
     1381 agaactgtgc ccaggcccgg aagagactaa acaaactaaa ccaatgagat agagtccaag
     1441 gcagatgcct tcctcaggaa aatctagcca catctcaagc caagaggcca gtacccagac
     1501 ctaaggtagt cacataaatg ctttctcagt tgtgctggtg gagatttgac cagtgcttgg
     1561 agaagtattg cttggatgat gtgtccacat aatttcttga ggctgtcctc ctctttgtgt
     1621 tgctttctgt ggtgtcgtag ctatttatta ttagacaaat tcgggcggcc caccatcttc
     1681 ccttggtagc actttttttt gtctcttcag gtagtgataa atttgttgct ctgtcacaaa
     1741 aggagggaac tagcacccaa ttggattgct taagggagga agtgtacata ttgcttaact
     1801 tagatggggt gggggaggtt taaagaaaaa taggaggagg cagttagttc tttccattcc
     1861 atccttgatg aacctgccct ttctaaatat gactagtggt gtggattcta gagtcacttt
     1921 attgctggca ttagcaaaga atgggaggaa aaccgcgaag agatcaggct ttctaacttc
     1981 catctcaaaa atttgagatt accgcacact tcaaactgct tctgatgtgt tctgtgaaaa
     2041 aaagagtgct caaaaagctt agagagtatt ccatatccct tttctcctct tgaagatcaa
     2101 cccaccttag aatattaagg actctgaaaa ttcctgttac agtaaagaaa actaacctta
     2161 atctaccgtt tcccacgcta tttgaacatg gacgtcttag cccccaatcc gttatcccat
     2221 gaaaacctag caacactttt tggaagattg ttctgcggaa tgccagttta cggaagtggg
     2281 tagctatact tgagggaagc actttgctag tgctgcaaag tttaccctct gtgatttttc
     2341 tttcacctct ctcaagactt ttcaactaag aggatgaaag gcaagaagtg gggacgtgtg
     2401 aaaataattt tatgaagttg tttaaaataa agagtagttt ctta
//
LOCUS       XM_032611214             566 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A13
            (S100A13), transcript variant X1, mRNA.
ACCESSION   XM_032611214
VERSION     XM_032611214.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..566
                     /gene="S100A13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743069"
     CDS             170..466
                     /gene="S100A13"
                     /codon_start=1
                     /product="protein S100-A13"
                     /protein_id="XP_032467105.1"
                     /db_xref="GeneID:116743069"
                     /translation="MAAEPLTELEAAIETVVTTFFTFAGQEGRKGSLSINEFKELVTQ
                     QLPHLLKDVGSLEEKMKSLDVNQDSELKFNEYWRLIGELAKEIRKEKALQIRKK"
     misc_feature    188..457
                     /gene="S100A13"
                     /note="S-100A13 domain found in proteins similar to
                     S100A13. S100A13 is a calcium-binding protein belonging to
                     a large S100 vertebrate-specific protein family within the
                     EF-hand superfamily of calcium-binding proteins. Note that
                     the S-100 hierarchy, to which...; Region: S-100A13;
                     cd05022"
                     /db_xref="CDD:240149"
     misc_feature    order(188..199,203..208,212..217,224..226,290..292,
                     302..304,311..313,386..388,398..400,407..409,416..424,
                     428..433)
                     /gene="S100A13"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240149"
     misc_feature    order(239..241,254..256,263..265,278..280,359..361,
                     365..367,371..373,377..379,392..394)
                     /gene="S100A13"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240149"
     misc_feature    431..457
                     /gene="S100A13"
                     /note="putative FGF-1 binding site [active]"
                     /db_xref="CDD:240149"
ORIGIN      
        1 tctcttcaga atgcacgacg gaaacttgac acctccgggc ttgggagggg ctctttcctc
       61 cctccaggga agcttataaa cctcagccct agggctcctg tctcgctgca tcccatctcc
      121 ttgccccgat cagccctgtg aggacatcag ctccagcccc agggtcctaa tggcagccga
      181 accactgact gagctggagg cggccattga gactgtggtc accaccttct tcacctttgc
      241 agggcaggag ggccggaagg gcagcctcag catcaatgag tttaaggaac tggtcactca
      301 gcagttgcct cacctgctca aggatgtggg ctccttagag gagaagatga agagcttgga
      361 tgtgaatcag gactcagagc tcaagttcaa tgagtactgg agactgattg gggagctggc
      421 caaggagatc aggaaggaga aggccctgca gatccgaaag aagtaaagcc ggctggccgg
      481 gatgggggtg ggcatggcag ggctgggcag taccccactc cccacaaata aagctttctc
      541 cttgaaacac agatgtttct tactca
//
LOCUS       XM_032611223             736 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A13
            (S100A13), transcript variant X2, mRNA.
ACCESSION   XM_032611223
VERSION     XM_032611223.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..736
                     /gene="S100A13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743069"
     CDS             340..636
                     /gene="S100A13"
                     /codon_start=1
                     /product="protein S100-A13"
                     /protein_id="XP_032467114.1"
                     /db_xref="GeneID:116743069"
                     /translation="MAAEPLTELEAAIETVVTTFFTFAGQEGRKGSLSINEFKELVTQ
                     QLPHLLKDVGSLEEKMKSLDVNQDSELKFNEYWRLIGELAKEIRKEKALQIRKK"
     misc_feature    358..627
                     /gene="S100A13"
                     /note="S-100A13 domain found in proteins similar to
                     S100A13. S100A13 is a calcium-binding protein belonging to
                     a large S100 vertebrate-specific protein family within the
                     EF-hand superfamily of calcium-binding proteins. Note that
                     the S-100 hierarchy, to which...; Region: S-100A13;
                     cd05022"
                     /db_xref="CDD:240149"
     misc_feature    order(358..369,373..378,382..387,394..396,460..462,
                     472..474,481..483,556..558,568..570,577..579,586..594,
                     598..603)
                     /gene="S100A13"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240149"
     misc_feature    order(409..411,424..426,433..435,448..450,529..531,
                     535..537,541..543,547..549,562..564)
                     /gene="S100A13"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240149"
     misc_feature    601..627
                     /gene="S100A13"
                     /note="putative FGF-1 binding site [active]"
                     /db_xref="CDD:240149"
ORIGIN      
        1 ccaggtcctt gcacaaacaa gctttggaga caaacaaccc catgaccctt tgaggccggt
       61 taagctccaa gaaaggaccc ttgggactga accccacaga ggggccacca gactgagagg
      121 actccaaaga aggaccccag actgaaagcc tgctcccaga cagaggggtc tccagactga
      181 gggaccacca cacacgggtc cctgagacac ggacacttca aaaggacccc cagactgtga
      241 gacctagaga ggaaggggtt tctggaagtg aacatttctt ccccccacct acactgagat
      301 cagccctgtg aggacatcag ctccagcccc agggtcctaa tggcagccga accactgact
      361 gagctggagg cggccattga gactgtggtc accaccttct tcacctttgc agggcaggag
      421 ggccggaagg gcagcctcag catcaatgag tttaaggaac tggtcactca gcagttgcct
      481 cacctgctca aggatgtggg ctccttagag gagaagatga agagcttgga tgtgaatcag
      541 gactcagagc tcaagttcaa tgagtactgg agactgattg gggagctggc caaggagatc
      601 aggaaggaga aggccctgca gatccgaaag aagtaaagcc ggctggccgg gatgggggtg
      661 ggcatggcag ggctgggcag taccccactc cccacaaata aagctttctc cttgaaacac
      721 agatgtttct tactca
//
LOCUS       XM_032611236             554 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A1 (S100A1),
            transcript variant X1, mRNA.
ACCESSION   XM_032611236
VERSION     XM_032611236.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..554
                     /gene="S100A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743076"
     CDS             103..387
                     /gene="S100A1"
                     /codon_start=1
                     /product="protein S100-A1"
                     /protein_id="XP_032467127.1"
                     /db_xref="GeneID:116743076"
                     /translation="MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSG
                     FLDAQKDADAVDKVMKELDENGDGEVDFQEYVVLVAALTVACNNFFWENS"
     misc_feature    106..381
                     /gene="S100A1"
                     /note="S-100A1 domain found in proteins similar to S100A1.
                     S100A1 is a calcium-binding protein belonging to a large
                     S100 vertebrate-specific protein family within the EF-hand
                     superfamily of calcium-binding proteins. Note that the
                     S-100 hierarchy, to which this...; Region: S-100A1;
                     cd05025"
                     /db_xref="CDD:240152"
     misc_feature    order(106..129,133..147,151..153,211..216,220..228,
                     235..237,316..321,328..333,340..345,349..363,373..375)
                     /gene="S100A1"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240152"
     misc_feature    order(118..120,232..237,241..243,247..252,256..258,
                     271..273,316..321,328..330,340..354,358..372)
                     /gene="S100A1"
                     /note="CapZ binding site [active]"
                     /db_xref="CDD:240152"
     misc_feature    order(160..162,175..180,184..189,199..201,286..291,
                     301..303,307..315,322..324)
                     /gene="S100A1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240152"
ORIGIN      
        1 aggacgactg aagacaggtc tccccacaca gctccggtag ccacatttgc agcctcgtct
       61 gtctgtccag aacctgctcc caggctgaca gtgagctaca agatgggctc tgagctggag
      121 acggcaatgg agactctcat caatgtgttc cacgcccact cgggcaagga gggggacaag
      181 tacaagctga gcaagaagga gctgaaagag ctgctgcaga cggagctctc cggcttcctg
      241 gacgcccaga aggatgcgga tgctgtggac aaggtgatga aggagttaga tgagaatgga
      301 gatggagagg tggacttcca ggagtatgtg gtgctggtgg ctgccctcac agtggcctgt
      361 aacaacttct tctgggagaa cagttgagca gacagcccca gtggggcaag cgcccttcgc
      421 ctccaccctg ccatacctgc cccttcaacc ctgcttcccc ctcacccact tttccctccc
      481 ccaccaataa gggcgcaaga gtagtgggcc aggcctgcaa ctcatctttc attaaaggct
      541 cttctctcac aagc
//
LOCUS       XM_032611246             586 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A1 (S100A1),
            transcript variant X2, mRNA.
ACCESSION   XM_032611246
VERSION     XM_032611246.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..586
                     /gene="S100A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743076"
     CDS             135..419
                     /gene="S100A1"
                     /codon_start=1
                     /product="protein S100-A1"
                     /protein_id="XP_032467137.1"
                     /db_xref="GeneID:116743076"
                     /translation="MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSG
                     FLDAQKDADAVDKVMKELDENGDGEVDFQEYVVLVAALTVACNNFFWENS"
     misc_feature    138..413
                     /gene="S100A1"
                     /note="S-100A1 domain found in proteins similar to S100A1.
                     S100A1 is a calcium-binding protein belonging to a large
                     S100 vertebrate-specific protein family within the EF-hand
                     superfamily of calcium-binding proteins. Note that the
                     S-100 hierarchy, to which this...; Region: S-100A1;
                     cd05025"
                     /db_xref="CDD:240152"
     misc_feature    order(138..161,165..179,183..185,243..248,252..260,
                     267..269,348..353,360..365,372..377,381..395,405..407)
                     /gene="S100A1"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240152"
     misc_feature    order(150..152,264..269,273..275,279..284,288..290,
                     303..305,348..353,360..362,372..386,390..404)
                     /gene="S100A1"
                     /note="CapZ binding site [active]"
                     /db_xref="CDD:240152"
     misc_feature    order(192..194,207..212,216..221,231..233,318..323,
                     333..335,339..347,354..356)
                     /gene="S100A1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240152"
ORIGIN      
        1 cggctccagg gtaggaacct gggaggccag ggcggaaaaa ggctccccag gaaccctcca
       61 gggctccggt agccacattt gcagcctcgt ctgtctgtcc agaacctgct cccaggctga
      121 cagtgagcta caagatgggc tctgagctgg agacggcaat ggagactctc atcaatgtgt
      181 tccacgccca ctcgggcaag gagggggaca agtacaagct gagcaagaag gagctgaaag
      241 agctgctgca gacggagctc tccggcttcc tggacgccca gaaggatgcg gatgctgtgg
      301 acaaggtgat gaaggagtta gatgagaatg gagatggaga ggtggacttc caggagtatg
      361 tggtgctggt ggctgccctc acagtggcct gtaacaactt cttctgggag aacagttgag
      421 cagacagccc cagtggggca agcgcccttc gcctccaccc tgccatacct gccccttcaa
      481 ccctgcttcc ccctcaccca cttttccctc ccccaccaat aagggcgcaa gagtagtggg
      541 ccaggcctgc aactcatctt tcattaaagg ctcttctctc acaagc
//
LOCUS       XM_032611253             590 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A1 (S100A1),
            transcript variant X3, mRNA.
ACCESSION   XM_032611253
VERSION     XM_032611253.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..590
                     /gene="S100A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743076"
     CDS             141..425
                     /gene="S100A1"
                     /codon_start=1
                     /product="protein S100-A1"
                     /protein_id="XP_032467144.1"
                     /db_xref="GeneID:116743076"
                     /translation="MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSG
                     FLDAQKDADAVDKVMKELDENGDGEVDFQEYVVLVAALTVACNNFFWENS"
     misc_feature    144..419
                     /gene="S100A1"
                     /note="S-100A1 domain found in proteins similar to S100A1.
                     S100A1 is a calcium-binding protein belonging to a large
                     S100 vertebrate-specific protein family within the EF-hand
                     superfamily of calcium-binding proteins. Note that the
                     S-100 hierarchy, to which this...; Region: S-100A1;
                     cd05025"
                     /db_xref="CDD:240152"
     misc_feature    order(144..167,171..185,189..191,249..254,258..266,
                     273..275,354..359,366..371,378..383,387..401,411..413)
                     /gene="S100A1"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240152"
     misc_feature    order(156..158,270..275,279..281,285..290,294..296,
                     309..311,354..359,366..368,378..392,396..410)
                     /gene="S100A1"
                     /note="CapZ binding site [active]"
                     /db_xref="CDD:240152"
     misc_feature    order(198..200,213..218,222..227,237..239,324..329,
                     339..341,345..353,360..362)
                     /gene="S100A1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240152"
ORIGIN      
        1 ccagggtagg aacctgggag gccagggcgg aaaaaggctc cccaggaacc ctccagggct
       61 ccggtagcca catttgcagc ctcgtctgtc tgtccagaac ctgctcccag gctgacagac
      121 gtgggtaggt gagctacaag atgggctctg agctggagac ggcaatggag actctcatca
      181 atgtgttcca cgcccactcg ggcaaggagg gggacaagta caagctgagc aagaaggagc
      241 tgaaagagct gctgcagacg gagctctccg gcttcctgga cgcccagaag gatgcggatg
      301 ctgtggacaa ggtgatgaag gagttagatg agaatggaga tggagaggtg gacttccagg
      361 agtatgtggt gctggtggct gccctcacag tggcctgtaa caacttcttc tgggagaaca
      421 gttgagcaga cagccccagt ggggcaagcg cccttcgcct ccaccctgcc atacctgccc
      481 cttcaaccct gcttccccct cacccacttt tccctccccc accaataagg gcgcaagagt
      541 agtgggccag gcctgcaact catctttcat taaaggctct tctctcacaa
//
LOCUS       XM_032611264             583 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A1 (S100A1),
            transcript variant X4, mRNA.
ACCESSION   XM_032611264
VERSION     XM_032611264.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..583
                     /gene="S100A1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743076"
     CDS             134..418
                     /gene="S100A1"
                     /codon_start=1
                     /product="protein S100-A1"
                     /protein_id="XP_032467155.1"
                     /db_xref="GeneID:116743076"
                     /translation="MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSG
                     FLDAQKDADAVDKVMKELDENGDGEVDFQEYVVLVAALTVACNNFFWENS"
     misc_feature    137..412
                     /gene="S100A1"
                     /note="S-100A1 domain found in proteins similar to S100A1.
                     S100A1 is a calcium-binding protein belonging to a large
                     S100 vertebrate-specific protein family within the EF-hand
                     superfamily of calcium-binding proteins. Note that the
                     S-100 hierarchy, to which this...; Region: S-100A1;
                     cd05025"
                     /db_xref="CDD:240152"
     misc_feature    order(137..160,164..178,182..184,242..247,251..259,
                     266..268,347..352,359..364,371..376,380..394,404..406)
                     /gene="S100A1"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240152"
     misc_feature    order(149..151,263..268,272..274,278..283,287..289,
                     302..304,347..352,359..361,371..385,389..403)
                     /gene="S100A1"
                     /note="CapZ binding site [active]"
                     /db_xref="CDD:240152"
     misc_feature    order(191..193,206..211,215..220,230..232,317..322,
                     332..334,338..346,353..355)
                     /gene="S100A1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240152"
ORIGIN      
        1 ccagggtagg aacctgggag gccagggcgg aaaaaggctc cccaggaacc ctccagggct
       61 ccggtagcca catttgcagc ctcgtctgtc tgtccagaac ctgctcccag gctgacagta
      121 ggtgagctac aagatgggct ctgagctgga gacggcaatg gagactctca tcaatgtgtt
      181 ccacgcccac tcgggcaagg agggggacaa gtacaagctg agcaagaagg agctgaaaga
      241 gctgctgcag acggagctct ccggcttcct ggacgcccag aaggatgcgg atgctgtgga
      301 caaggtgatg aaggagttag atgagaatgg agatggagag gtggacttcc aggagtatgt
      361 ggtgctggtg gctgccctca cagtggcctg taacaacttc ttctgggaga acagttgagc
      421 agacagcccc agtggggcaa gcgcccttcg cctccaccct gccatacctg ccccttcaac
      481 cctgcttccc cctcacccac ttttccctcc cccaccaata agggcgcaag agtagtgggc
      541 caggcctgca actcatcttt cattaaaggc tcttctctca caa
//
LOCUS       XM_032611278            7650 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pappalysin 2 (PAPPA2), mRNA.
ACCESSION   XM_032611278
VERSION     XM_032611278.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7650
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7650
                     /gene="PAPPA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 83% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743087"
     CDS             1..5370
                     /gene="PAPPA2"
                     /codon_start=1
                     /product="pappalysin-2"
                     /protein_id="XP_032467169.1"
                     /db_xref="GeneID:116743087"
                     /translation="MMRLKILRISLVILAGWALSTVSSELGWTRKRSLAQRGHLNQVL
                     LEGERCWLGAKVRRPRAAPQHHLFGVYPSRPGNYLRPYPARDQGTYHAGRSKPDAEGM
                     AVRSVPPDLTGSAGVTSEAERPAALWVGDGPIGQSELLGDDDTYLGDQGSKEPLGEAG
                     TQEHGALAAAKITTFPRQKEPGPETQRKGRTKTRRRRQVAKGQAGGVQGDPSVVPRHF
                     QPWSKHPLMHGVRTSSSEGSIQNGGGDPDWEAETFSPQGGLPVLYFSGRREQLLLRPE
                     VLADIPREAFTVEAWVKPEGGQNSPAIIAGVFDNCSHTISDKGWALGIRSGKDVGRRD
                     ARFFFSLRTDHVKKATIVMGHGRYQPGKWTHVAATYDGQRMALYVDGTQVASSPDQSG
                     PLNSPFMASCRSLFLGGDSSEDGHHFRGHLGTLVFWSTALAQSHLQHSPEQPSEVEDL
                     TTLLLTASFEPLEEQWAPFRDGKYPRLEVLQGFEPEPEILSPLQPPLCGQTACDNVEL
                     ISQYSWHWPLRGEKVIRYQVVNICDDEGLNPTVSEEQISRQHEVLNEAFSRYNISWQL
                     NIQQVHNSTLRHRVVLVNCEPSKIGNDHCDPECEHPLTGYDGGDCRLQGRCYSWNRRD
                     GICHVECNNMLNDFDDGDCCDPEGADVHKTCFDPDSPRRAYMSVKELKEALQLNSTHF
                     LNVYFASSVREDLAGAATWPWDKEAISHLGGVVLNPAYYGMPGHTNIMIHEVGHVLGL
                     YHVFKGVSERESCDDPCRETVPSMDTGDLCADTAPTPKSKLCQDPEPINDTCGFTHFP
                     GAPFSNYMSYTDDDCTDSFTPNQVARMHCYLDLVYQQWSQSRKPTPIPIPPMVIGQTP
                     LSLTIHWLPPISGVVYDRVPGSVCGACTEEGTFRQYVHTASSRRVCDSSGYWTPEEAV
                     GPPDVDQPCEPSLQAWSPELHLYHMNMTVPCPAEGCSLELLFQHPVQADTLTLWVTYL
                     SMDSPQALFDTEILLEHQESVHLGPLDTFCDTPLTIKLHVDGKVLGVKVYTFDERMEI
                     DAALLTSQPHSPLCSGCRPVRYQVLREPPFASGLPMVVTHPHRKFTDVEVTPGQMYRY
                     QVQAAAGAELGEASPPLSHIHGAPYCGDGKVARSLGEECDDGDLLSGDGCSRACELEE
                     GFNCVGEPSLCYIYEGDGICEPFEKETSITDCGLYTPKGYLDQWATQAYSSHEDKKKC
                     PVSLVTGEPPSMICTSYRPDLPEHRPLTGWFPCVTSGNSPQDEGSKQLKGSLEREDEV
                     WLKVCFHRPGVATAIFIFLTSDGLVGEHQRPTVTVYLTDISGNNHSLGSYELSCQHNP
                     LVINVTHHSNVLFHHTTSVLLNFSSPLVGISAVALRTSSIISPSASNICIPEHEGQNH
                     QGQSCVHRPCGEQGSCVPLLLDHADVVNCTSGGPGHMKCSITCQRGFDLQASSGQYLR
                     PMQKEILLTCSSGHWDRAVSCMPLDCGVPDQSLVNYANFSCSEGTNFLKRCSISCVPP
                     AKLQGLSPWLTCLEDGLWSLPEAYCKLECDVPPVIPNANLLLPHCLQGNHDVGSICRY
                     KCKPGYYVMGSAENKVRNKFLKIQCLEDGIWEQGSCVPVVCEPPSPVFEGMYECTNGF
                     ELNSQCVLNCNEESKRLPILCTKEGLWTEEFKLCENLQGECPPPASELNFVEYKCEQG
                     YRIGAVCSPSCIIPPSDPVILPANVTADTLEHWMEPVKVQSIVCTGRRQWHPDPLLIH
                     CIQSCEPFQADGWCDTINNRAYCHYDGGDCCSSTLSSKKVIPFAADCDLDECTCRDPK
                     AEENL"
     misc_feature    853..1305
                     /gene="PAPPA2"
                     /note="LamG-like jellyroll fold domain; Region: LamGL;
                     smart00560"
                     /db_xref="CDD:214722"
     misc_feature    <1750..1833
                     /gene="PAPPA2"
                     /note="LNR domain; Region: Notch; cl02419"
                     /db_xref="CDD:470573"
     misc_feature    <1960..2490
                     /gene="PAPPA2"
                     /note="Zinc-dependent metalloprotease, pappalysin_like
                     subfamily. The pregnancy-associated plasma protein A
                     (PAPP-A or pappalysin-1) cleaves insulin-like growth
                     factor-binding proteins 4 and 5, thereby promoting cell
                     growth by releasing bound growth factor; Region:
                     ZnMc_pappalysin_like; cd04275"
                     /db_xref="CDD:239802"
     misc_feature    order(2194..2199,2206..2208,2224..2226)
                     /gene="PAPPA2"
                     /note="active site"
                     /db_xref="CDD:239802"
     misc_feature    3331..3450
                     /gene="PAPPA2"
                     /note="Myxococcus cysteine-rich repeat; Region:
                     myxo_disulf_rpt; TIGR02232"
                     /db_xref="CDD:200169"
     misc_feature    <4471..5037
                     /gene="PAPPA2"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    4567..4758
                     /gene="PAPPA2"
                     /note="Sushi repeat (SCR repeat); Region: Sushi;
                     pfam00084"
                     /db_xref="CDD:459664"
     misc_feature    5158..5268
                     /gene="PAPPA2"
                     /note="Domain found in Notch and Lin-12; Region: NL;
                     smart00004"
                     /db_xref="CDD:197463"
ORIGIN      
        1 atgatgcgct taaagattct gagaataagc ctggtgattc tggctgggtg ggcgctcagt
       61 actgtcagct ctgagctggg ctggacacgc aagagatcct tggctcaaag aggacacctg
      121 aatcaggtgc tgttggaagg agaacgctgt tggctggggg ccaaggttag aagacccaga
      181 gctgcccctc agcatcacct ctttggggtc taccccagca gacctgggaa ctacctgagg
      241 ccctaccctg cgagggatca aggaacgtac catgcagggc gcagtaagcc agacgccgag
      301 ggaatggccg tgagatctgt tcccccagac ctgactggaa gtgcaggagt gacaagtgag
      361 gctgagcggc cagctgccct gtgggtaggg gatggtccta ttgggcagtc ggagctactg
      421 ggagatgatg acacttatct tggcgatcaa ggatccaagg agcctctagg tgaggctggg
      481 actcaagaac acggagcctt ggctgccgcc aagatcacca ccttcccacg ccagaaggaa
      541 cccggaccag agacccaaag gaagggccgg accaagacca ggcggcggcg ccaggtggcg
      601 aaggggcagg caggaggtgt gcagggagac cccagtgttg ttccccggca cttccagcct
      661 tggtctaagc atccccttat gcatggggtc agaaccagct cttcggaggg cagcatccag
      721 aatggtggag gggaccccga ctgggaagca gagaccttta gcccccaagg aggattgcct
      781 gttttgtact tctctgggag gcgggagcag ctgttgctgc gtccagaagt gctggctgac
      841 attccccggg aggcgttcac agtggaagcc tgggtgaaac cggagggagg acagaacagc
      901 ccagccatca ttgcaggtgt gtttgataac tgctcccaca ctatcagtga caagggctgg
      961 gccctgggga tccgctcagg gaaggatgtg ggaaggcgag atgctcgctt cttcttctct
     1021 cttcgcactg accacgtgaa gaaagccacc attgtgatgg gtcacggtcg ctatcaacca
     1081 ggcaagtgga cgcacgtggc agccacttac gatggacagc gcatggccct gtatgtcgat
     1141 ggcactcagg tggctagtag tccagatcag tccggtcccc tgaacagtcc cttcatggca
     1201 tcttgtcgct ctttgttcct gggtggggat agctccgagg acgggcacca cttccgtgga
     1261 cacctgggca cactggtctt ctggtcgacg gccctcgcac aaagccacct ccagcacagt
     1321 cctgagcagc caagcgaggt ggaggatttg accaccctgc tactgacagc cagttttgag
     1381 cccctggaag aacagtgggc cccctttaga gacgggaagt acccacggct tgaggttctc
     1441 cagggctttg agccggagcc tgagattctg tcacctttgc agcccccgct ctgtgggcaa
     1501 acagcctgtg acaacgtgga actgatttcc cagtacagct ggcactggcc ccttcgggga
     1561 gagaaggtga tccgctacca ggtagtaaac atctgcgacg acgagggcct gaaccccacc
     1621 gtaagtgagg agcagatcag tcggcagcat gaagtgctca atgaagcctt cagccgctac
     1681 aacatcagct ggcagctgaa catccagcag gtccacaact ccaccctgcg ccaccgtgtt
     1741 gtgctcgtga actgtgagcc cagcaagatt ggcaatgacc actgtgaccc tgagtgtgag
     1801 cacccactca caggctacga cgggggcgac tgccgcctgc agggccggtg ctactcctgg
     1861 aatcgcaggg atgggatctg ccacgtggag tgcaacaaca tgctgaacga ctttgatgat
     1921 ggtgactgct gtgacccgga gggggctgac gtgcacaaga cctgcttcga ccctgactcg
     1981 cctaggaggg cgtacatgag tgtgaaggag ctgaaagagg cactgcagct caacagcact
     2041 cacttcctca acgtctactt tgccagctca gtgcgggaag accttgcagg tgctgccacc
     2101 tggccttggg acaaggaagc catcagtcac ctgggtggtg ttgtcctcaa cccagcctat
     2161 tatggcatgc ctggccacac caacatcatg atccatgagg tggggcatgt cctgggactc
     2221 taccatgtct tcaaaggggt cagtgaaaga gaatcctgtg acgacccctg cagggagacg
     2281 gtgccgtcca tggatacagg agacctctgt gccgacactg cccccactcc caagagtaag
     2341 ctgtgccagg acccagagcc tatcaatgac acctgtggct tcacccactt cccaggggct
     2401 ccattcagca actacatgag ttatacagat gacgactgca ctgacagctt cacccctaac
     2461 caagtggccc gaatgcactg ctatttggac cttgtatatc agcaatggag tcaaagccga
     2521 aagcccaccc ccattcccat cccacccatg gtcatcgggc agacccccct gtccctcact
     2581 atccactggc tgcctccaat tagtggagtt gtgtatgaca gggtcccggg cagcgtgtgt
     2641 ggtgcctgca ctgaagaagg gacattccgt cagtacgtgc acacagcttc ctcccggcgc
     2701 gtgtgtgact cctcgggtta ctggacccca gaggaggctg tggggcctcc agacgtggat
     2761 caaccttgtg agccaagctt gcaggcctgg agtcctgagc tccacctgta ccacatgaac
     2821 atgacggtcc cctgccctgc agaaggctgt agcctggagc tgctcttcca gcacccagtc
     2881 caagctgaca ctcttaccct gtgggtcacc tacctctcca tggactcccc ccaggcgctt
     2941 tttgacacag agatcttgct ggaacaccag gagtccgtgc acctaggccc cttagacact
     3001 ttctgtgaca ccccactcac tatcaaactg cacgttgatg ggaaagtctt gggggtgaaa
     3061 gtctacacct ttgatgagcg gatggagatt gatgcagctc tcctgacttc tcagccccac
     3121 agtcccttgt gttctggctg caggcccgtg aggtaccagg tcctccgtga acccccattt
     3181 gccagtggct tgcccatggt ggtgacacat cctcacagga aattcacaga cgtggaggtc
     3241 acacctgggc agatgtatcg gtaccaagtt caagctgcag ctggagcaga actgggagaa
     3301 gcttcgcctc ctctgagcca catccatgga gctccttact gtggagatgg gaaggttgca
     3361 aggagcctgg gcgaagagtg tgatgatgga gaccttttga gtggagatgg ctgctcaagg
     3421 gcatgtgaac tagaggaagg tttcaactgt gtaggggagc caagcctgtg ctatatatat
     3481 gagggagatg ggatatgtga accttttgag aaggaaacca gcatcacaga ctgtggcctc
     3541 tatactccca aaggatacct ggatcagtgg gctacccaag cttattcttc tcacgaagat
     3601 aagaagaagt gtcctgtttc cttggtaact ggagaacctc cttccatgat ttgcacatca
     3661 taccgtccag atttaccaga gcaccgtcca cttactggct ggtttccctg tgtcaccagt
     3721 ggaaatagcc ctcaggatga agggagtaag cagctaaaag gtagcctgga gagagaggat
     3781 gaggtttggc tcaaagtttg tttccataga ccaggagtgg ccacagcaat tttcattttc
     3841 ttgacatctg atggcctggt tggggaacat cagcggccaa cagtgaccgt ttacctgacc
     3901 gatatcagtg gaaacaacca ctctcttgga agctatgaac tgtcatgcca gcataaccca
     3961 ctggttatca atgtaaccca tcactcgaac gtcctcttcc accataccac ctcagtgctg
     4021 ctgaatttct catccccact ggtgggcatc tcagcagtgg ctctaaggac atcctccatc
     4081 ataagtcctt cagcttccaa catctgcatc ccagagcacg aggggcaaaa tcatcaggga
     4141 cagagctgtg tccatcggcc ctgtggggag cagggcagct gtgtgccatt gctgcttgat
     4201 cacgcggatg tggtgaactg tacctctggt ggcccaggtc acatgaagtg ctctatcacc
     4261 tgtcaaaggg ggtttgacct tcaggccagc agtgggcagt acctcaggcc catgcagaag
     4321 gaaattctgc tcacatgttc ctctgggcac tgggaccggg ctgtgagctg catgcccctt
     4381 gactgtggtg tccccgacca gtctttggtg aactatgcaa acttctcctg ctcagaggga
     4441 acaaactttc tgaaacgctg ctccatctcc tgtgtcccac cagccaagct tcaaggactg
     4501 agcccgtggc tgacctgtct tgaagatggg ctctggtctc tccctgaagc ctactgcaag
     4561 ttggagtgtg acgttccccc tgttatcccg aacgccaact tgctcctgcc tcactgcctc
     4621 cagggcaacc atgatgtggg ctccatctgc agatacaaat gcaaaccggg ctactacgtg
     4681 atgggaagtg cggagaataa agtcaggaac aagttcctga agatccagtg cctggaagat
     4741 ggaatctggg agcaaggcag ctgcgtccca gtggtgtgtg agcccccatc tcctgtcttt
     4801 gaaggcatgt atgaatgcac caacggcttt gagctcaaca gccagtgtgt gctcaactgt
     4861 aacgaggaaa gtaaaaggct tcccatcctc tgcacgaagg agggactgtg gaccgaggag
     4921 ttcaagttat gtgagaacct gcaaggggaa tgcccaccac ccgcctcgga gctgaatttc
     4981 gtggagtaca agtgtgaaca gggatacagg attggtgcag tgtgttcccc atcgtgtata
     5041 atccccccta gcgatcccgt aatccttcct gcgaacgtca ctgctgacac tctggagcac
     5101 tggatggaac ctgtcaaagt ccagagcatc gtgtgcactg ggcggcgtca gtggcaccca
     5161 gaccccctcc tgatccactg catccagtcc tgtgagcctt tccaagcaga tggttggtgt
     5221 gataccatca ataaccgggc ctactgccac tatgatgggg gagactgctg ctcttccacg
     5281 ctctcctcca agaaggtcat tccatttgct gctgactgtg atctggatga atgcacctgc
     5341 cgagacccga aggcggaaga aaacctgtaa ctgtgggatc aagcccctcc ttccactgcc
     5401 ctggaggcag taagaatcag aggcctccac aaaaggaaac aaaagatcaa tgaagaagaa
     5461 aggtcatgaa atgaaggaag gaagaagaac accaaggatc ctataagaaa tgcaagagga
     5521 cgtttatagg tgccaactat tgcgtcaagt agcccaagta aggatcacag gcaaacattt
     5581 cttcaaagag gcagttgatt taaagtggaa agagaaatat gatatatata caaggaccct
     5641 ccttccccat ttatattcta tcaaatccca tcctcaactc ttgccctgct ccccactctg
     5701 caccctgcca actattcagc cccacccaac ttgtaaacca ataccaaaat actagaagag
     5761 aagttgccag ggacactctg ctaataccca ttttgaatgg atggccatct ttcagggctc
     5821 gtctaatcta aactggctct ctccctttct ttgtgtagtc tcccttagta ataatgaggt
     5881 tagttattaa ttctttataa gtatttaaac ataatgatat aaatatatta tatatattat
     5941 attttttgct gtctactaag ctaaaaatta tccattgttc cacacatgct gctgtgaagt
     6001 tcacgcccaa aatgaatgct gagggtttga ggaccgaaag acatgttctt ctgccatctt
     6061 tctattccta gggattggca ggctgagagg gagctgggga aggaaaggga gagattagat
     6121 ggagtttttg ataatcacat gtcagctaat catcttttta tgaactggga gctgagccca
     6181 gtttgaggag atgggggctt ggaatgataa tactaaaagg catggaaagg tgggtggggt
     6241 tatccattgg tgatgggtcc aggaaaacta gactatggtt cttgagtatc catccaaaaa
     6301 gaatacattc tcttcagttc ttggaactct tctttgcagt tggtgaggcc caggattttc
     6361 tgcacttcca caggtgcctg ttccaagtgt ggctctcagc cagtcactca gtccacaagg
     6421 ctgtatgtag gctcactctc ccatcatcac caggattaca ggaactcacg catgcctcat
     6481 acttggcctg tggtctccct tttcctaagt ctccaagcct ggccatcatc cacagccaca
     6541 tgacctattg ttgactttct ggggaaaaaa tgtcatggaa atgacatcgg ggaaaggtgg
     6601 aggaaactga agaacaggca ggtttggagg aggccataga caggggagaa gtcagggtaa
     6661 atcagagccc agggctggag gatgaattga gtcaaggaga ctcagcctcg ttccgagtct
     6721 ccacagcaga ccaaagggga tctttctttt gaacaatgca gactcggagg taaattctat
     6781 tcaagtgtga tgtgtcagat gtgtcccaga gagagcactt tgagcaagct atgaaaataa
     6841 catggagcaa gggtgacact ctgtggggag agagaagaat ttcagctgct tagggtccat
     6901 tttgtcgttg ttaccctctt tcttgttcaa tagatggact gtatgtgaaa cgaccgcgtt
     6961 aacctgcctc tgtttacgtc ctgggctgac tcattttgca cgtggtctcc tgcagttgtt
     7021 ctttagtgac gatttatggg ttaggccttg gggaaagaaa gtaaggagct agtttcttgt
     7081 tcaacacccc agtttatcat ctcaggaagg gaagaacagg caaaagttca agggcagcct
     7141 tggtctccct ggatcgcctg ccctttggct ctgaccacag ttttctattc ttcccatcaa
     7201 ccccgaaagc agtggctgtg caaatatcaa tagaaagaag aaatgcttcc cccactgtct
     7261 tgagccagac ttcacgtagg aaagaacaac atatttatct gtggggatct gaaatgaggg
     7321 tggcaaggtc accggggaag ggaaagacca gagtctgccc atccaaaata ctcttgttct
     7381 ctgtatttcc agccgtaatg gaaacaatag ccgagatacc tactgttcct tatctgggtt
     7441 cacatttagt gcccccaaga agagaatatt tatttctggg attctgatag gcttcaatat
     7501 ggaaaggaca gtagaagagt ttagattctt cattttaaaa cagttgtaag atggttatcc
     7561 aaatttcttg aagcatgtca aactccgtgc aggggaatcc tgccatgtct gagcttgaga
     7621 gttatcctac gcttcgccca gctcaggaag
//
LOCUS       XM_032611292            3134 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus origin recognition complex subunit 1
            (ORC1), transcript variant X1, mRNA.
ACCESSION   XM_032611292
VERSION     XM_032611292.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3134
                     /gene="ORC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743089"
     CDS             327..2918
                     /gene="ORC1"
                     /codon_start=1
                     /product="origin recognition complex subunit 1"
                     /protein_id="XP_032467183.1"
                     /db_xref="GeneID:116743089"
                     /translation="MAYRPTRLRTRQTYSWIGKPLDRKLHYQTCKEMSVKIEGRLPEI
                     DLQVGQFVLIEGDDDENPYVAKLVELFEDDFEPYSKKRARVQWFIRFCEVPVCKQHLL
                     GRKPDAQEIFWYDYPACNSNINAETIIGHVQVVALAPDEVIPMDLKNEKTFFVKLSWN
                     EKKFKPLPPELFAQLDKLQESNPRCQKSMEAKTKSTESPSWTTAEHVVKRIESRHSTS
                     KSRQTPSHPVTPRARKRLELSSFPRTHNTRISQQASWASLESPGRMKWKVAFSEITSP
                     SKRSQPDGPQNSSAALKTPEKAGEIQQCWAKDDKKASPDGCMILRTRVPALKTTETSE
                     ERTFTPVRGGQKSLVVPSVILKPENIKKRETKEPVQDEATSTPRPRIRRKSSLLTLNR
                     IRQQLRFLGNSKSDQEDEEFLPVAEISDSDSEEEEASTPPLPRRTPSSVSRNLRSSMK
                     SSLQTPSKTPKKTPEPRTPRHATPRIRSRNLAAQEPANVLEEARLRLHVSAVPASLPC
                     REQEFQDIYNFVESKLLDHTGGCMYISGVPGTGKTATVHEVIRCLQQASQANDVPPFQ
                     YIEVNGMKLTEPHQVYVQILQKLTGHRATAHHAAELLAKRFRTRGSSQETTVLLVDEL
                     DLLWTQKQDVMYNLFDWPTHKEARLVVLTIANTMDLPERIMMNRVSSRLGLTRMSFQP
                     YTHSQLQQILVSRLKHLKAFEDDAIQLVARKVAALSGDARRCLDICRRATEICEFSCQ
                     KPDSPGLVTTAHLLEAVEEMFSSSYITAIKNSSVLEQSFLRAILAEFRRSGLEEATFQ
                     QVYTQHVALCRMEGLPYPTMSETMAVCSHLGSCRLLLVEPSRNDLLLRVRLNVSQDDV
                     LYALKEE"
     misc_feature    453..833
                     /gene="ORC1"
                     /note="BAH, or Bromo Adjacent Homology domain, as present
                     in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1
                     is part of the Yeast Sir1-origin recognition complex. The
                     Orc1p BAH doman functions in epigenetic silencing. In
                     vertebrates, a similar ORC...; Region: BAH_Orc1p_animal;
                     cd04719"
                     /db_xref="CDD:240070"
     misc_feature    <834..1790
                     /gene="ORC1"
                     /note="capsid maturational protease; Provisional; Region:
                     PHA03369"
                     /db_xref="CDD:223061"
     misc_feature    <1626..2690
                     /gene="ORC1"
                     /note="origin recognition complex 1 protein; Provisional;
                     Region: PTZ00112"
                     /db_xref="CDD:240274"
     misc_feature    2664..2903
                     /gene="ORC1"
                     /note="CDC6, C terminal winged helix domain; Region:
                     Cdc6_C; pfam09079"
                     /db_xref="CDD:462672"
ORIGIN      
        1 gcccccgctt cggctccggt atgcagctgg tagctgtaag aggagtgccc ctgggcaggt
       61 agatttgctg cagctccacg agctcctgaa gcggggacgg tgggaagcgg agggcttgcg
      121 cccagctcca acaaactgcg gcgcccgtag cctattttgc ctgatttcat cgcggaaagg
      181 tgaaaagtta caagtttact gatagttcca tgttacatct tccattaaaa ggaacgtata
      241 ttgaagctat tcacaatatt aatatctagg acctatcagc tgcaaagaaa aagaccactt
      301 ccaactgcca gagcagtaca ggagccatgg cctaccgtcc tacaaggctg aggaccagac
      361 aaacttattc atggattggc aagccattgg atcgaaaact gcactaccaa acctgcaaag
      421 aaatgagtgt gaaaatagaa ggtcgtttgc ctgagattga cctccaggtt ggacagtttg
      481 tgttgattga aggggatgat gatgaaaatc cgtatgttgc taaattggtt gagttgtttg
      541 aagatgattt tgaaccttat tccaagaaac gtgctcgagt acaatggttt atccgattct
      601 gtgaagtccc tgtctgtaaa cagcatttgc tgggccggaa gcctgatgca caagagatat
      661 tctggtatga ttaccctgcc tgtaacagca acattaatgc cgagaccatc attggccacg
      721 tgcaggtagt agctttagcc ccagatgaag tgatacctat ggatctgaaa aatgagaaga
      781 cattctttgt taaactatct tggaatgaga aaaaattcaa accactacct ccagaactat
      841 ttgcacagtt ggataagcta caagaaagca accctagatg ccagaagtcc atggaagcca
      901 aaactaaaag tacagaaagc ccttcttgga ccacagcaga acatgtggtc aaaaggattg
      961 aatcaaggca ctccacctcc aaatctcgcc aaactccttc ccatcctgtc accccaaggg
     1021 caaggaagag gctggagctc agcagtttcc ctaggacaca taacactagg atttcccagc
     1081 aggcttcatg ggcctcgttg gagtctcctg gaagaatgaa atggaaagtg gccttctctg
     1141 agatcacctc gccttcaaag aggtctcagc ctgatggtcc tcagaactcg tctgcagctc
     1201 tgaaaactcc agagaaagct ggagagattc agcagtgttg ggccaaggat gacaagaagg
     1261 cttcacctga tggttgcatg atcctgagaa ctcgagtccc agctttgaaa acgacagaga
     1321 ctagtgaaga aagaacattt actcctgtca gggggggaca gaaatccttg gtggtgcctt
     1381 ctgtgattct gaaaccagaa aacatcaaaa agagggagac caaagaacca gttcaggatg
     1441 aagctacctc tactcctcgt cctcgtatcc gcagaaagag ctctctcttg actttgaatc
     1501 ggattaggca gcagcttagg tttttaggta atagtaaaag tgaccaagaa gatgaagagt
     1561 ttctgccggt agccgagatt tcagactctg acagtgagga ggaagaggct tccacacccc
     1621 ctcttccaag gagaacaccc agcagtgtgt ccaggaacct acgctcttcc atgaagtcat
     1681 ccttacagac cccctccaag acaccaaaga aaacccccga gcccagaaca ccacgtcacg
     1741 ccactccccg gatccgcagc cgaaacctgg ctgcccagga gcccgccaat gtgctggagg
     1801 aggcccggct gaggctgcat gtttctgctg tacctgcgtc tcttccctgt cgggaacagg
     1861 aattccagga catatacaac tttgtggaaa gcaaactcct tgaccatact ggagggtgca
     1921 tgtacatctc cggggtccct gggacaggga agactgccac tgtacacgag gtgatacgct
     1981 gcctgcagca ggcatcccaa gcaaatgatg ttcctccctt tcaatacatt gaggtcaatg
     2041 gcatgaagct gacagagccc caccaagtct atgtgcaaat cttgcagaag ctgacgggtc
     2101 acagggctac agctcaccac gcggcagaac tgctggctaa gcgattccgc actcgagggt
     2161 cctctcagga aaccactgtg ctgcttgtgg atgagctcga ccttctgtgg actcagaaac
     2221 aagacgtaat gtacaatctg tttgactggc ccactcacaa ggaggcccgg cttgtggtcc
     2281 tgaccattgc caacaccatg gatctgccag agcgcatcat gatgaaccgg gtgtccagcc
     2341 gactgggtct aaccaggatg tccttccagc cctatactca cagccaactg caacagatcc
     2401 tggtgtcccg actcaaacat ttaaaggcct ttgaggatga tgccatccag ttggtagcca
     2461 ggaaggtagc agccctctct ggagatgcac gacgctgcct ggacatttgt aggcgtgcca
     2521 cagagatttg tgagttctcc tgccagaagc ccgactcccc tggcctggtc actacagccc
     2581 acttactgga agcagtagag gagatgtttt cttcgtcata catcactgcc atcaagaatt
     2641 cctccgttct ggaacagagc ttcctgagag ccatccttgc agagttccgt cgatcaggac
     2701 tggaggaagc aacatttcaa caggtataca ctcaacacgt ggcactgtgc aggatggagg
     2761 gtctcccgta ccccaccatg tcagagacca tggcggtgtg ctctcaccta ggctcctgcc
     2821 gcctcctcct tgtggagccc agcaggaatg acctgctcct tcgtgtgcgg ctcaacgtca
     2881 gccaggatga tgttttatat gcactgaaag aagagtgaag ggcttcacaa ggaagaactg
     2941 tgatctgctg tttttaaaga gccctgtttc catttcctaa gcacatgcaa tcattgtagc
     3001 gaagtatact gaacagcaat ggctgtcatg tattttgcaa ttttccgtta aatcatttgc
     3061 tttttctgga gtgtttggga agttttatag tcattacaaa catcaaatta taaaatgaaa
     3121 ccatccctcc taca
//
LOCUS       XM_032611302            3131 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus origin recognition complex subunit 1
            (ORC1), transcript variant X2, mRNA.
ACCESSION   XM_032611302
VERSION     XM_032611302.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3131
                     /gene="ORC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743089"
     CDS             324..2915
                     /gene="ORC1"
                     /codon_start=1
                     /product="origin recognition complex subunit 1"
                     /protein_id="XP_032467193.1"
                     /db_xref="GeneID:116743089"
                     /translation="MAYRPTRLRTRQTYSWIGKPLDRKLHYQTCKEMSVKIEGRLPEI
                     DLQVGQFVLIEGDDDENPYVAKLVELFEDDFEPYSKKRARVQWFIRFCEVPVCKQHLL
                     GRKPDAQEIFWYDYPACNSNINAETIIGHVQVVALAPDEVIPMDLKNEKTFFVKLSWN
                     EKKFKPLPPELFAQLDKLQESNPRCQKSMEAKTKSTESPSWTTAEHVVKRIESRHSTS
                     KSRQTPSHPVTPRARKRLELSSFPRTHNTRISQQASWASLESPGRMKWKVAFSEITSP
                     SKRSQPDGPQNSSAALKTPEKAGEIQQCWAKDDKKASPDGCMILRTRVPALKTTETSE
                     ERTFTPVRGGQKSLVVPSVILKPENIKKRETKEPVQDEATSTPRPRIRRKSSLLTLNR
                     IRQQLRFLGNSKSDQEDEEFLPVAEISDSDSEEEEASTPPLPRRTPSSVSRNLRSSMK
                     SSLQTPSKTPKKTPEPRTPRHATPRIRSRNLAAQEPANVLEEARLRLHVSAVPASLPC
                     REQEFQDIYNFVESKLLDHTGGCMYISGVPGTGKTATVHEVIRCLQQASQANDVPPFQ
                     YIEVNGMKLTEPHQVYVQILQKLTGHRATAHHAAELLAKRFRTRGSSQETTVLLVDEL
                     DLLWTQKQDVMYNLFDWPTHKEARLVVLTIANTMDLPERIMMNRVSSRLGLTRMSFQP
                     YTHSQLQQILVSRLKHLKAFEDDAIQLVARKVAALSGDARRCLDICRRATEICEFSCQ
                     KPDSPGLVTTAHLLEAVEEMFSSSYITAIKNSSVLEQSFLRAILAEFRRSGLEEATFQ
                     QVYTQHVALCRMEGLPYPTMSETMAVCSHLGSCRLLLVEPSRNDLLLRVRLNVSQDDV
                     LYALKEE"
     misc_feature    450..830
                     /gene="ORC1"
                     /note="BAH, or Bromo Adjacent Homology domain, as present
                     in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1
                     is part of the Yeast Sir1-origin recognition complex. The
                     Orc1p BAH doman functions in epigenetic silencing. In
                     vertebrates, a similar ORC...; Region: BAH_Orc1p_animal;
                     cd04719"
                     /db_xref="CDD:240070"
     misc_feature    <831..1787
                     /gene="ORC1"
                     /note="capsid maturational protease; Provisional; Region:
                     PHA03369"
                     /db_xref="CDD:223061"
     misc_feature    <1623..2687
                     /gene="ORC1"
                     /note="origin recognition complex 1 protein; Provisional;
                     Region: PTZ00112"
                     /db_xref="CDD:240274"
     misc_feature    2661..2900
                     /gene="ORC1"
                     /note="CDC6, C terminal winged helix domain; Region:
                     Cdc6_C; pfam09079"
                     /db_xref="CDD:462672"
ORIGIN      
        1 gcccccgctt cggctccggt atgcagctgg tagctgtaag aggagtgccc ctgggcaggt
       61 agatttgctg cagctccacg agctcctgaa gcggggacgg tgggaagcgg agggcttgcg
      121 cccagctcca acaaactgcg gcgcccgcct attttgcctg atttcatcgc ggaaaggtga
      181 aaagttacaa gtttactgat agttccatgt tacatcttcc attaaaagga acgtatattg
      241 aagctattca caatattaat atctaggacc tatcagctgc aaagaaaaag accacttcca
      301 actgccagag cagtacagga gccatggcct accgtcctac aaggctgagg accagacaaa
      361 cttattcatg gattggcaag ccattggatc gaaaactgca ctaccaaacc tgcaaagaaa
      421 tgagtgtgaa aatagaaggt cgtttgcctg agattgacct ccaggttgga cagtttgtgt
      481 tgattgaagg ggatgatgat gaaaatccgt atgttgctaa attggttgag ttgtttgaag
      541 atgattttga accttattcc aagaaacgtg ctcgagtaca atggtttatc cgattctgtg
      601 aagtccctgt ctgtaaacag catttgctgg gccggaagcc tgatgcacaa gagatattct
      661 ggtatgatta ccctgcctgt aacagcaaca ttaatgccga gaccatcatt ggccacgtgc
      721 aggtagtagc tttagcccca gatgaagtga tacctatgga tctgaaaaat gagaagacat
      781 tctttgttaa actatcttgg aatgagaaaa aattcaaacc actacctcca gaactatttg
      841 cacagttgga taagctacaa gaaagcaacc ctagatgcca gaagtccatg gaagccaaaa
      901 ctaaaagtac agaaagccct tcttggacca cagcagaaca tgtggtcaaa aggattgaat
      961 caaggcactc cacctccaaa tctcgccaaa ctccttccca tcctgtcacc ccaagggcaa
     1021 ggaagaggct ggagctcagc agtttcccta ggacacataa cactaggatt tcccagcagg
     1081 cttcatgggc ctcgttggag tctcctggaa gaatgaaatg gaaagtggcc ttctctgaga
     1141 tcacctcgcc ttcaaagagg tctcagcctg atggtcctca gaactcgtct gcagctctga
     1201 aaactccaga gaaagctgga gagattcagc agtgttgggc caaggatgac aagaaggctt
     1261 cacctgatgg ttgcatgatc ctgagaactc gagtcccagc tttgaaaacg acagagacta
     1321 gtgaagaaag aacatttact cctgtcaggg ggggacagaa atccttggtg gtgccttctg
     1381 tgattctgaa accagaaaac atcaaaaaga gggagaccaa agaaccagtt caggatgaag
     1441 ctacctctac tcctcgtcct cgtatccgca gaaagagctc tctcttgact ttgaatcgga
     1501 ttaggcagca gcttaggttt ttaggtaata gtaaaagtga ccaagaagat gaagagtttc
     1561 tgccggtagc cgagatttca gactctgaca gtgaggagga agaggcttcc acaccccctc
     1621 ttccaaggag aacacccagc agtgtgtcca ggaacctacg ctcttccatg aagtcatcct
     1681 tacagacccc ctccaagaca ccaaagaaaa cccccgagcc cagaacacca cgtcacgcca
     1741 ctccccggat ccgcagccga aacctggctg cccaggagcc cgccaatgtg ctggaggagg
     1801 cccggctgag gctgcatgtt tctgctgtac ctgcgtctct tccctgtcgg gaacaggaat
     1861 tccaggacat atacaacttt gtggaaagca aactccttga ccatactgga gggtgcatgt
     1921 acatctccgg ggtccctggg acagggaaga ctgccactgt acacgaggtg atacgctgcc
     1981 tgcagcaggc atcccaagca aatgatgttc ctccctttca atacattgag gtcaatggca
     2041 tgaagctgac agagccccac caagtctatg tgcaaatctt gcagaagctg acgggtcaca
     2101 gggctacagc tcaccacgcg gcagaactgc tggctaagcg attccgcact cgagggtcct
     2161 ctcaggaaac cactgtgctg cttgtggatg agctcgacct tctgtggact cagaaacaag
     2221 acgtaatgta caatctgttt gactggccca ctcacaagga ggcccggctt gtggtcctga
     2281 ccattgccaa caccatggat ctgccagagc gcatcatgat gaaccgggtg tccagccgac
     2341 tgggtctaac caggatgtcc ttccagccct atactcacag ccaactgcaa cagatcctgg
     2401 tgtcccgact caaacattta aaggcctttg aggatgatgc catccagttg gtagccagga
     2461 aggtagcagc cctctctgga gatgcacgac gctgcctgga catttgtagg cgtgccacag
     2521 agatttgtga gttctcctgc cagaagcccg actcccctgg cctggtcact acagcccact
     2581 tactggaagc agtagaggag atgttttctt cgtcatacat cactgccatc aagaattcct
     2641 ccgttctgga acagagcttc ctgagagcca tccttgcaga gttccgtcga tcaggactgg
     2701 aggaagcaac atttcaacag gtatacactc aacacgtggc actgtgcagg atggagggtc
     2761 tcccgtaccc caccatgtca gagaccatgg cggtgtgctc tcacctaggc tcctgccgcc
     2821 tcctccttgt ggagcccagc aggaatgacc tgctccttcg tgtgcggctc aacgtcagcc
     2881 aggatgatgt tttatatgca ctgaaagaag agtgaagggc ttcacaagga agaactgtga
     2941 tctgctgttt ttaaagagcc ctgtttccat ttcctaagca catgcaatca ttgtagcgaa
     3001 gtatactgaa cagcaatggc tgtcatgtat tttgcaattt tccgttaaat catttgcttt
     3061 ttctggagtg tttgggaagt tttatagtca ttacaaacat caaattataa aatgaaacca
     3121 tccctcctac a
//
LOCUS       XM_032611316            2559 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X1, mRNA.
ACCESSION   XM_032611316
VERSION     XM_032611316.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2559
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             105..2171
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X1"
                     /protein_id="XP_032467207.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAKKVAPQ
                     NDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD
                     SGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKA
                     GLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI
                     RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP
                     DDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMG
                     PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTI
                     RGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPA
                     PYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYY
                     QQQAQPPPAAPAGAPTTTQTNGQGNYGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQ
                     DYSKAWEEYYKKQGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHP
                     PAPQGQ"
     misc_feature    459..683
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(462..467,471..473,477..479,501..509,513..521,
                     570..590,603..614,618..620)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(495..497,501..509,513..527,534..539,546..551,
                     564..575)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    723..932
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(750..752,756..764,768..782,789..794,801..806,
                     819..830)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    993..1196
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(1017..1034,1038..1052,1059..1064,1089..1091,
                     1095..1100,1128..1130)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1293..1508
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1320..1325,1329..1337,1341..1346,1350..1355,
                     1362..1367,1377..1379,1392..1394,1398..1403,1407..1409,
                     1440..1442)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    2040..>2102
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 cacaagaatg tgatacagcc tcggcggccg ccattttctt tctttcttag cagttggttg
       61 agaggtccct gcgaagaagc ggtagcggcc actgtagagt aggcatggca gattattcaa
      121 cagtgcctcc accctcctct ggctcagctg gtggtggagg cggcggcggt ggtggtggag
      181 gagttaacga tgctttcaaa gatgcgctgc agagagcccg acagattgca gcaaaaattg
      241 gaggtgatgc tggtacatca ctgaattcaa atgactatgg ttatggggga cagaaaagac
      301 ctttggaaga tggagatggc tcttggacaa gtccgagcag tacaacacac tgggagggaa
      361 tgccctctcc ttttaaagat cagccagatg ctaagaaagt tgctcctcaa aatgactctt
      421 ttggaacaca gttaccaccg atgcatcagc agcaaagcag atctgtaatg acagaagaat
      481 acaaagttcc agatgggatg gttggattta taattggcag aggaggtgaa cagatctcac
      541 gcatacaaca ggaatctgga tgcaaaatac agatagctcc tgacagtggt ggccttccag
      601 aaaggtcttg tatgttaact ggaacccctg agtctgtcca atcagcaaaa cggttactgg
      661 accagattgt tgaaaaagga agaccagccc ctggcttcca tcatggtgat gggccaggaa
      721 atgcggttca agaaatcatg attccagcta gcaaagcagg attagtcatt ggaaaggggg
      781 gagagactat taaacaactt caggaacggg ctggagttaa aatggttatg atccaagatg
      841 gacctcagaa cactggtgct gacaaacctc ttaggattac aggggaccca tacaaagttc
      901 aacaagccaa ggaaatggtg ttagaattaa ttcgtgatca aggtggtttc agagaagttc
      961 gaaatgagta tgggtcaaga ataggaggaa atgaaggaat agatgtcccc attccaagat
     1021 ttgctgttgg catcgtaata ggaagaaatg gagagatgat taaaaaaata caaaatgatg
     1081 ctggtgttcg aattcagttt aagccagatg acggaacgac accagataga atagcacaaa
     1141 taacaggacc tccagaccga tgtcaacatg ctgcagaaat tattacagac cttctccgaa
     1201 gtgttcaggc tggtaatcct ggtggacctg ggcctggtgg tcgaggaaga ggtagaggtc
     1261 aaggcaactg gaacatggga ccacctggtg gactacagga atttaatttc attgtaccaa
     1321 ctggaaaaac tggattaata ataggaaaag gaggtgaaac cataaaaagc ataagccaac
     1381 agtctggtgc aagaatagaa cttcagagaa atcctccacc taatgcagat cctaatatga
     1441 agttatttac aattcgtggc actccacagc aaatagacta tgctcggcaa ctcatagaag
     1501 aaaagattgg tggcccagta aatcctttag ggccacctgt accccatggg ccccatggtg
     1561 tcccaggccc ccacgggcct cctgggcccc ctgggcctgg aactccgatg ggaccatata
     1621 accctgcacc ttataatccg ggaccacctg gccctgctcc tcatggtcct ccagcccctt
     1681 atgctcccca agggtgggga aatgcgtatc cacattggca gcaacaggcc cctccagatc
     1741 cagctaaaac aggaacagat ccaaattcag cagcttgggc tgcttattat gctcactatt
     1801 atcaacaaca agcacagcca ccgcctgcag ctcctgccgg tgcaccaact acaacccaaa
     1861 ccaatggaca aggtaactat ggagatcaac agaatccagc tccagctgga caggttgatt
     1921 ataccaaggc ttgggaagag tactacaaga aaatgggtca acaagggcag acacaagatt
     1981 attcaaaggc ttgggaggaa tattacaaga agcaaggtca agcagttcct gcccctactg
     2041 gtgctccacc aggtggtcag ccagattata gtgcagcctg ggctgagtac tatagacaac
     2101 aagcagccta ctacgcccag acaagtcccc agggaatgcc acagcatcct ccagcacctc
     2161 agggccaata ataagaagtg gacaatacag tatttgcttc attgtgtggg ggaaaaaaac
     2221 ctttgttaaa tatatggatg cagacggctt gatgaagatc ttaattttgt ttttggttta
     2281 aaatagtgtt ttttctttct ttctttcttt cttttttttt tttttttttt tttgaaaatg
     2341 tacaaaatat ctatcactac tgataggagg ttaatatttc tgtgtagaaa tgaaaattgg
     2401 tttgttttta gtatttagtg tagatgtaca cattccagca aatgtatttg caactattat
     2461 gtggtcaatg ctttgtgata taaatgtact tttttcaatg tatactttca cttttaaaat
     2521 gcctgttttg tgctttacaa taaatgatat gaaacctcc
//
LOCUS       XM_032611326            2546 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X2, mRNA.
ACCESSION   XM_032611326
VERSION     XM_032611326.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2546
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             96..2159
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X2"
                     /protein_id="XP_032467217.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAKKVAPQ
                     NDSFGTQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS
                     GGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAG
                     LVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIR
                     DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD
                     DGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGP
                     PGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIR
                     GTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAP
                     YNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQ
                     QQAQPPPAAPAGAPTTTQTNGQGNYGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQD
                     YSKAWEEYYKKQGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPP
                     APQGQ"
     misc_feature    447..671
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(450..455,459..461,465..467,489..497,501..509,
                     558..578,591..602,606..608)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(483..485,489..497,501..515,522..527,534..539,
                     552..563)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    711..920
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(738..740,744..752,756..770,777..782,789..794,
                     807..818)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    981..1184
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(1005..1022,1026..1040,1047..1052,1077..1079,
                     1083..1088,1116..1118)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1281..1496
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1308..1313,1317..1325,1329..1334,1338..1343,
                     1350..1355,1365..1367,1380..1382,1386..1391,1395..1397,
                     1428..1430)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    2028..>2090
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 gtgatacagc ctcggcggcc gccattttct ttctttctta gcagttggtt gagaggtccc
       61 tgcgaagaag cggtagcggc cactgtagag taggcatggc agattattca acagtgcctc
      121 caccctcctc tggctcagct ggtggtggag gcggcggcgg tggtggtgga ggagttaacg
      181 atgctttcaa agatgcgctg cagagagccc gacagattgc agcaaaaatt ggaggtgatg
      241 ctggtacatc actgaattca aatgactatg gttatggggg acagaaaaga cctttggaag
      301 atggagatgg ctcttggaca agtccgagca gtacaacaca ctgggaggga atgccctctc
      361 cttttaaaga tcagccagat gctaagaaag ttgctcctca aaatgactct tttggaacac
      421 agttaccacc gatgcatcag cagcaaagat ctgtaatgac agaagaatac aaagttccag
      481 atgggatggt tggatttata attggcagag gaggtgaaca gatctcacgc atacaacagg
      541 aatctggatg caaaatacag atagctcctg acagtggtgg ccttccagaa aggtcttgta
      601 tgttaactgg aacccctgag tctgtccaat cagcaaaacg gttactggac cagattgttg
      661 aaaaaggaag accagcccct ggcttccatc atggtgatgg gccaggaaat gcggttcaag
      721 aaatcatgat tccagctagc aaagcaggat tagtcattgg aaagggggga gagactatta
      781 aacaacttca ggaacgggct ggagttaaaa tggttatgat ccaagatgga cctcagaaca
      841 ctggtgctga caaacctctt aggattacag gggacccata caaagttcaa caagccaagg
      901 aaatggtgtt agaattaatt cgtgatcaag gtggtttcag agaagttcga aatgagtatg
      961 ggtcaagaat aggaggaaat gaaggaatag atgtccccat tccaagattt gctgttggca
     1021 tcgtaatagg aagaaatgga gagatgatta aaaaaataca aaatgatgct ggtgttcgaa
     1081 ttcagtttaa gccagatgac ggaacgacac cagatagaat agcacaaata acaggacctc
     1141 cagaccgatg tcaacatgct gcagaaatta ttacagacct tctccgaagt gttcaggctg
     1201 gtaatcctgg tggacctggg cctggtggtc gaggaagagg tagaggtcaa ggcaactgga
     1261 acatgggacc acctggtgga ctacaggaat ttaatttcat tgtaccaact ggaaaaactg
     1321 gattaataat aggaaaagga ggtgaaacca taaaaagcat aagccaacag tctggtgcaa
     1381 gaatagaact tcagagaaat cctccaccta atgcagatcc taatatgaag ttatttacaa
     1441 ttcgtggcac tccacagcaa atagactatg ctcggcaact catagaagaa aagattggtg
     1501 gcccagtaaa tcctttaggg ccacctgtac cccatgggcc ccatggtgtc ccaggccccc
     1561 acgggcctcc tgggccccct gggcctggaa ctccgatggg accatataac cctgcacctt
     1621 ataatccggg accacctggc cctgctcctc atggtcctcc agccccttat gctccccaag
     1681 ggtggggaaa tgcgtatcca cattggcagc aacaggcccc tccagatcca gctaaaacag
     1741 gaacagatcc aaattcagca gcttgggctg cttattatgc tcactattat caacaacaag
     1801 cacagccacc gcctgcagct cctgccggtg caccaactac aacccaaacc aatggacaag
     1861 gtaactatgg agatcaacag aatccagctc cagctggaca ggttgattat accaaggctt
     1921 gggaagagta ctacaagaaa atgggtcaac aagggcagac acaagattat tcaaaggctt
     1981 gggaggaata ttacaagaag caaggtcaag cagttcctgc ccctactggt gctccaccag
     2041 gtggtcagcc agattatagt gcagcctggg ctgagtacta tagacaacaa gcagcctact
     2101 acgcccagac aagtccccag ggaatgccac agcatcctcc agcacctcag ggccaataat
     2161 aagaagtgga caatacagta tttgcttcat tgtgtggggg aaaaaaacct ttgttaaata
     2221 tatggatgca gacggcttga tgaagatctt aattttgttt ttggtttaaa atagtgtttt
     2281 ttctttcttt ctttctttct tttttttttt tttttttttt tgaaaatgta caaaatatct
     2341 atcactactg ataggaggtt aatatttctg tgtagaaatg aaaattggtt tgtttttagt
     2401 atttagtgta gatgtacaca ttccagcaaa tgtatttgca actattatgt ggtcaatgct
     2461 ttgtgatata aatgtacttt tttcaatgta tactttcact tttaaaatgc ctgttttgtg
     2521 ctttacaata aatgatatga aacctc
//
LOCUS       XM_032611336            2549 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X3, mRNA.
ACCESSION   XM_032611336
VERSION     XM_032611336.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2549
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             105..2162
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X3"
                     /protein_id="XP_032467227.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAKKVAPQ
                     NDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD
                     SGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKA
                     GLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI
                     RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP
                     DDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMG
                     PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTI
                     RGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPA
                     PYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYY
                     QQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQDYS
                     KAWEEYYKKQGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAP
                     QGQ"
     misc_feature    459..683
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(462..467,471..473,477..479,501..509,513..521,
                     570..590,603..614,618..620)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(495..497,501..509,513..527,534..539,546..551,
                     564..575)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    723..932
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(750..752,756..764,768..782,789..794,801..806,
                     819..830)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    993..1196
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(1017..1034,1038..1052,1059..1064,1089..1091,
                     1095..1100,1128..1130)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1293..1508
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1320..1325,1329..1337,1341..1346,1350..1355,
                     1362..1367,1377..1379,1392..1394,1398..1403,1407..1409,
                     1440..1442)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    2031..>2093
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 cacaagaatg tgatacagcc tcggcggccg ccattttctt tctttcttag cagttggttg
       61 agaggtccct gcgaagaagc ggtagcggcc actgtagagt aggcatggca gattattcaa
      121 cagtgcctcc accctcctct ggctcagctg gtggtggagg cggcggcggt ggtggtggag
      181 gagttaacga tgctttcaaa gatgcgctgc agagagcccg acagattgca gcaaaaattg
      241 gaggtgatgc tggtacatca ctgaattcaa atgactatgg ttatggggga cagaaaagac
      301 ctttggaaga tggagatggc tcttggacaa gtccgagcag tacaacacac tgggagggaa
      361 tgccctctcc ttttaaagat cagccagatg ctaagaaagt tgctcctcaa aatgactctt
      421 ttggaacaca gttaccaccg atgcatcagc agcaaagcag atctgtaatg acagaagaat
      481 acaaagttcc agatgggatg gttggattta taattggcag aggaggtgaa cagatctcac
      541 gcatacaaca ggaatctgga tgcaaaatac agatagctcc tgacagtggt ggccttccag
      601 aaaggtcttg tatgttaact ggaacccctg agtctgtcca atcagcaaaa cggttactgg
      661 accagattgt tgaaaaagga agaccagccc ctggcttcca tcatggtgat gggccaggaa
      721 atgcggttca agaaatcatg attccagcta gcaaagcagg attagtcatt ggaaaggggg
      781 gagagactat taaacaactt caggaacggg ctggagttaa aatggttatg atccaagatg
      841 gacctcagaa cactggtgct gacaaacctc ttaggattac aggggaccca tacaaagttc
      901 aacaagccaa ggaaatggtg ttagaattaa ttcgtgatca aggtggtttc agagaagttc
      961 gaaatgagta tgggtcaaga ataggaggaa atgaaggaat agatgtcccc attccaagat
     1021 ttgctgttgg catcgtaata ggaagaaatg gagagatgat taaaaaaata caaaatgatg
     1081 ctggtgttcg aattcagttt aagccagatg acggaacgac accagataga atagcacaaa
     1141 taacaggacc tccagaccga tgtcaacatg ctgcagaaat tattacagac cttctccgaa
     1201 gtgttcaggc tggtaatcct ggtggacctg ggcctggtgg tcgaggaaga ggtagaggtc
     1261 aaggcaactg gaacatggga ccacctggtg gactacagga atttaatttc attgtaccaa
     1321 ctggaaaaac tggattaata ataggaaaag gaggtgaaac cataaaaagc ataagccaac
     1381 agtctggtgc aagaatagaa cttcagagaa atcctccacc taatgcagat cctaatatga
     1441 agttatttac aattcgtggc actccacagc aaatagacta tgctcggcaa ctcatagaag
     1501 aaaagattgg tggcccagta aatcctttag ggccacctgt accccatggg ccccatggtg
     1561 tcccaggccc ccacgggcct cctgggcccc ctgggcctgg aactccgatg ggaccatata
     1621 accctgcacc ttataatccg ggaccacctg gccctgctcc tcatggtcct ccagcccctt
     1681 atgctcccca agggtgggga aatgcgtatc cacattggca gcaacaggcc cctccagatc
     1741 cagctaaaac aggaacagat ccaaattcag cagcttgggc tgcttattat gctcactatt
     1801 atcaacaaca agcacagcca ccgcctgcag ctcctgccgg tgcaccaact acaacccaaa
     1861 ccaatggaca aggagatcaa cagaatccag ctccagctgg acaggttgat tataccaagg
     1921 cttgggaaga gtactacaag aaaatgggtc aacaagggca gacacaagat tattcaaagg
     1981 cttgggagga atattacaag aagcaaggtc aagcagttcc tgcccctact ggtgctccac
     2041 caggtggtca gccagattat agtgcagcct gggctgagta ctatagacaa caagcagcct
     2101 actacgccca gacaagtccc cagggaatgc cacagcatcc tccagcacct cagggccaat
     2161 aataagaagt ggacaataca gtatttgctt cattgtgtgg gggaaaaaaa cctttgttaa
     2221 atatatggat gcagacggct tgatgaagat cttaattttg tttttggttt aaaatagtgt
     2281 tttttctttc tttctttctt tctttttttt tttttttttt ttttgaaaat gtacaaaata
     2341 tctatcacta ctgataggag gttaatattt ctgtgtagaa atgaaaattg gtttgttttt
     2401 agtatttagt gtagatgtac acattccagc aaatgtattt gcaactatta tgtggtcaat
     2461 gctttgtgat ataaatgtac ttttttcaat gtatactttc acttttaaaa tgcctgtttt
     2521 gtgctttaca ataaatgata tgaaacctc
//
LOCUS       XM_032611344            2498 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X4, mRNA.
ACCESSION   XM_032611344
VERSION     XM_032611344.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2498
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             105..2111
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X4"
                     /protein_id="XP_032467235.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAKKVAPQ
                     NDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD
                     SGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKA
                     GLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI
                     RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP
                     DDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMG
                     PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTI
                     RGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPA
                     PYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYY
                     QQQAQPPPAAPAGAPTTTQTNGQGNYGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAP
                     TGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ"
     misc_feature    459..683
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(462..467,471..473,477..479,501..509,513..521,
                     570..590,603..614,618..620)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(495..497,501..509,513..527,534..539,546..551,
                     564..575)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    723..932
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(750..752,756..764,768..782,789..794,801..806,
                     819..830)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    993..1196
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(1017..1034,1038..1052,1059..1064,1089..1091,
                     1095..1100,1128..1130)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1293..1508
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1320..1325,1329..1337,1341..1346,1350..1355,
                     1362..1367,1377..1379,1392..1394,1398..1403,1407..1409,
                     1440..1442)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    1980..>2042
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 cacaagaatg tgatacagcc tcggcggccg ccattttctt tctttcttag cagttggttg
       61 agaggtccct gcgaagaagc ggtagcggcc actgtagagt aggcatggca gattattcaa
      121 cagtgcctcc accctcctct ggctcagctg gtggtggagg cggcggcggt ggtggtggag
      181 gagttaacga tgctttcaaa gatgcgctgc agagagcccg acagattgca gcaaaaattg
      241 gaggtgatgc tggtacatca ctgaattcaa atgactatgg ttatggggga cagaaaagac
      301 ctttggaaga tggagatggc tcttggacaa gtccgagcag tacaacacac tgggagggaa
      361 tgccctctcc ttttaaagat cagccagatg ctaagaaagt tgctcctcaa aatgactctt
      421 ttggaacaca gttaccaccg atgcatcagc agcaaagcag atctgtaatg acagaagaat
      481 acaaagttcc agatgggatg gttggattta taattggcag aggaggtgaa cagatctcac
      541 gcatacaaca ggaatctgga tgcaaaatac agatagctcc tgacagtggt ggccttccag
      601 aaaggtcttg tatgttaact ggaacccctg agtctgtcca atcagcaaaa cggttactgg
      661 accagattgt tgaaaaagga agaccagccc ctggcttcca tcatggtgat gggccaggaa
      721 atgcggttca agaaatcatg attccagcta gcaaagcagg attagtcatt ggaaaggggg
      781 gagagactat taaacaactt caggaacggg ctggagttaa aatggttatg atccaagatg
      841 gacctcagaa cactggtgct gacaaacctc ttaggattac aggggaccca tacaaagttc
      901 aacaagccaa ggaaatggtg ttagaattaa ttcgtgatca aggtggtttc agagaagttc
      961 gaaatgagta tgggtcaaga ataggaggaa atgaaggaat agatgtcccc attccaagat
     1021 ttgctgttgg catcgtaata ggaagaaatg gagagatgat taaaaaaata caaaatgatg
     1081 ctggtgttcg aattcagttt aagccagatg acggaacgac accagataga atagcacaaa
     1141 taacaggacc tccagaccga tgtcaacatg ctgcagaaat tattacagac cttctccgaa
     1201 gtgttcaggc tggtaatcct ggtggacctg ggcctggtgg tcgaggaaga ggtagaggtc
     1261 aaggcaactg gaacatggga ccacctggtg gactacagga atttaatttc attgtaccaa
     1321 ctggaaaaac tggattaata ataggaaaag gaggtgaaac cataaaaagc ataagccaac
     1381 agtctggtgc aagaatagaa cttcagagaa atcctccacc taatgcagat cctaatatga
     1441 agttatttac aattcgtggc actccacagc aaatagacta tgctcggcaa ctcatagaag
     1501 aaaagattgg tggcccagta aatcctttag ggccacctgt accccatggg ccccatggtg
     1561 tcccaggccc ccacgggcct cctgggcccc ctgggcctgg aactccgatg ggaccatata
     1621 accctgcacc ttataatccg ggaccacctg gccctgctcc tcatggtcct ccagcccctt
     1681 atgctcccca agggtgggga aatgcgtatc cacattggca gcaacaggcc cctccagatc
     1741 cagctaaaac aggaacagat ccaaattcag cagcttgggc tgcttattat gctcactatt
     1801 atcaacaaca agcacagcca ccgcctgcag ctcctgccgg tgcaccaact acaacccaaa
     1861 ccaatggaca aggtaactat ggagatcaac agaatccagc tccagctgga caggttgatt
     1921 ataccaaggc ttgggaagag tactacaaga aaatgggtca agcagttcct gcccctactg
     1981 gtgctccacc aggtggtcag ccagattata gtgcagcctg ggctgagtac tatagacaac
     2041 aagcagccta ctacgcccag acaagtcccc agggaatgcc acagcatcct ccagcacctc
     2101 agggccaata ataagaagtg gacaatacag tatttgcttc attgtgtggg ggaaaaaaac
     2161 ctttgttaaa tatatggatg cagacggctt gatgaagatc ttaattttgt ttttggttta
     2221 aaatagtgtt ttttctttct ttctttcttt cttttttttt tttttttttt tttgaaaatg
     2281 tacaaaatat ctatcactac tgataggagg ttaatatttc tgtgtagaaa tgaaaattgg
     2341 tttgttttta gtatttagtg tagatgtaca cattccagca aatgtatttg caactattat
     2401 gtggtcaatg ctttgtgata taaatgtact tttttcaatg tatactttca cttttaaaat
     2461 gcctgttttg tgctttacaa taaatgatat gaaacctc
//
LOCUS       XM_032611351            2486 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X5, mRNA.
ACCESSION   XM_032611351
VERSION     XM_032611351.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2486
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             96..2099
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X5"
                     /protein_id="XP_032467242.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQSRSVMT
                     EEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSA
                     KRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVK
                     MVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE
                     GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQH
                     AAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLII
                     GKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGP
                     VNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQ
                     GWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTN
                     GQGNYGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQDYSKAWEEYYKKQGQAVPAPT
                     GAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ"
     misc_feature    387..611
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(390..395,399..401,405..407,429..437,441..449,
                     498..518,531..542,546..548)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(423..425,429..437,441..455,462..467,474..479,
                     492..503)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    651..860
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(678..680,684..692,696..710,717..722,729..734,
                     747..758)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    921..1124
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(945..962,966..980,987..992,1017..1019,1023..1028,
                     1056..1058)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1221..1436
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1248..1253,1257..1265,1269..1274,1278..1283,
                     1290..1295,1305..1307,1320..1322,1326..1331,1335..1337,
                     1368..1370)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    1968..>2030
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 gtgatacagc ctcggcggcc gccattttct ttctttctta gcagttggtt gagaggtccc
       61 tgcgaagaag cggtagcggc cactgtagag taggcatggc agattattca acagtgcctc
      121 caccctcctc tggctcagct ggtggtggag gcggcggcgg tggtggtgga ggagttaacg
      181 atgctttcaa agatgcgctg cagagagccc gacagattgc agcaaaaatt ggaggtgatg
      241 ctggtacatc actgaattca aatgactatg gttatggggg acagaaaaga cctttggaag
      301 atggagatca gccagatgct aagaaagttg ctcctcaaaa tgactctttt ggaacacagt
      361 taccaccgat gcatcagcag caaagcagat ctgtaatgac agaagaatac aaagttccag
      421 atgggatggt tggatttata attggcagag gaggtgaaca gatctcacgc atacaacagg
      481 aatctggatg caaaatacag atagctcctg acagtggtgg ccttccagaa aggtcttgta
      541 tgttaactgg aacccctgag tctgtccaat cagcaaaacg gttactggac cagattgttg
      601 aaaaaggaag accagcccct ggcttccatc atggtgatgg gccaggaaat gcggttcaag
      661 aaatcatgat tccagctagc aaagcaggat tagtcattgg aaagggggga gagactatta
      721 aacaacttca ggaacgggct ggagttaaaa tggttatgat ccaagatgga cctcagaaca
      781 ctggtgctga caaacctctt aggattacag gggacccata caaagttcaa caagccaagg
      841 aaatggtgtt agaattaatt cgtgatcaag gtggtttcag agaagttcga aatgagtatg
      901 ggtcaagaat aggaggaaat gaaggaatag atgtccccat tccaagattt gctgttggca
      961 tcgtaatagg aagaaatgga gagatgatta aaaaaataca aaatgatgct ggtgttcgaa
     1021 ttcagtttaa gccagatgac ggaacgacac cagatagaat agcacaaata acaggacctc
     1081 cagaccgatg tcaacatgct gcagaaatta ttacagacct tctccgaagt gttcaggctg
     1141 gtaatcctgg tggacctggg cctggtggtc gaggaagagg tagaggtcaa ggcaactgga
     1201 acatgggacc acctggtgga ctacaggaat ttaatttcat tgtaccaact ggaaaaactg
     1261 gattaataat aggaaaagga ggtgaaacca taaaaagcat aagccaacag tctggtgcaa
     1321 gaatagaact tcagagaaat cctccaccta atgcagatcc taatatgaag ttatttacaa
     1381 ttcgtggcac tccacagcaa atagactatg ctcggcaact catagaagaa aagattggtg
     1441 gcccagtaaa tcctttaggg ccacctgtac cccatgggcc ccatggtgtc ccaggccccc
     1501 acgggcctcc tgggccccct gggcctggaa ctccgatggg accatataac cctgcacctt
     1561 ataatccggg accacctggc cctgctcctc atggtcctcc agccccttat gctccccaag
     1621 ggtggggaaa tgcgtatcca cattggcagc aacaggcccc tccagatcca gctaaaacag
     1681 gaacagatcc aaattcagca gcttgggctg cttattatgc tcactattat caacaacaag
     1741 cacagccacc gcctgcagct cctgccggtg caccaactac aacccaaacc aatggacaag
     1801 gtaactatgg agatcaacag aatccagctc cagctggaca ggttgattat accaaggctt
     1861 gggaagagta ctacaagaaa atgggtcaac aagggcagac acaagattat tcaaaggctt
     1921 gggaggaata ttacaagaag caaggtcaag cagttcctgc ccctactggt gctccaccag
     1981 gtggtcagcc agattatagt gcagcctggg ctgagtacta tagacaacaa gcagcctact
     2041 acgcccagac aagtccccag ggaatgccac agcatcctcc agcacctcag ggccaataat
     2101 aagaagtgga caatacagta tttgcttcat tgtgtggggg aaaaaaacct ttgttaaata
     2161 tatggatgca gacggcttga tgaagatctt aattttgttt ttggtttaaa atagtgtttt
     2221 ttctttcttt ctttctttct tttttttttt tttttttttt tgaaaatgta caaaatatct
     2281 atcactactg ataggaggtt aatatttctg tgtagaaatg aaaattggtt tgtttttagt
     2341 atttagtgta gatgtacaca ttccagcaaa tgtatttgca actattatgt ggtcaatgct
     2401 ttgtgatata aatgtacttt tttcaatgta tactttcact tttaaaatgc ctgttttgtg
     2461 ctttacaata aatgatatga aacctc
//
LOCUS       XM_032611357            2483 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X6, mRNA.
ACCESSION   XM_032611357
VERSION     XM_032611357.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2483
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             96..2096
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X6"
                     /protein_id="XP_032467248.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQRSVMTE
                     EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK
                     RLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKM
                     VMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEG
                     IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHA
                     AEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIG
                     KGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPV
                     NPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQG
                     WGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNG
                     QGNYGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQDYSKAWEEYYKKQGQAVPAPTG
                     APPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ"
     misc_feature    384..608
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(387..392,396..398,402..404,426..434,438..446,
                     495..515,528..539,543..545)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(420..422,426..434,438..452,459..464,471..476,
                     489..500)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    648..857
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(675..677,681..689,693..707,714..719,726..731,
                     744..755)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    918..1121
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(942..959,963..977,984..989,1014..1016,1020..1025,
                     1053..1055)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1218..1433
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1245..1250,1254..1262,1266..1271,1275..1280,
                     1287..1292,1302..1304,1317..1319,1323..1328,1332..1334,
                     1365..1367)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    1965..>2027
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 gtgatacagc ctcggcggcc gccattttct ttctttctta gcagttggtt gagaggtccc
       61 tgcgaagaag cggtagcggc cactgtagag taggcatggc agattattca acagtgcctc
      121 caccctcctc tggctcagct ggtggtggag gcggcggcgg tggtggtgga ggagttaacg
      181 atgctttcaa agatgcgctg cagagagccc gacagattgc agcaaaaatt ggaggtgatg
      241 ctggtacatc actgaattca aatgactatg gttatggggg acagaaaaga cctttggaag
      301 atggagatca gccagatgct aagaaagttg ctcctcaaaa tgactctttt ggaacacagt
      361 taccaccgat gcatcagcag caaagatctg taatgacaga agaatacaaa gttccagatg
      421 ggatggttgg atttataatt ggcagaggag gtgaacagat ctcacgcata caacaggaat
      481 ctggatgcaa aatacagata gctcctgaca gtggtggcct tccagaaagg tcttgtatgt
      541 taactggaac ccctgagtct gtccaatcag caaaacggtt actggaccag attgttgaaa
      601 aaggaagacc agcccctggc ttccatcatg gtgatgggcc aggaaatgcg gttcaagaaa
      661 tcatgattcc agctagcaaa gcaggattag tcattggaaa ggggggagag actattaaac
      721 aacttcagga acgggctgga gttaaaatgg ttatgatcca agatggacct cagaacactg
      781 gtgctgacaa acctcttagg attacagggg acccatacaa agttcaacaa gccaaggaaa
      841 tggtgttaga attaattcgt gatcaaggtg gtttcagaga agttcgaaat gagtatgggt
      901 caagaatagg aggaaatgaa ggaatagatg tccccattcc aagatttgct gttggcatcg
      961 taataggaag aaatggagag atgattaaaa aaatacaaaa tgatgctggt gttcgaattc
     1021 agtttaagcc agatgacgga acgacaccag atagaatagc acaaataaca ggacctccag
     1081 accgatgtca acatgctgca gaaattatta cagaccttct ccgaagtgtt caggctggta
     1141 atcctggtgg acctgggcct ggtggtcgag gaagaggtag aggtcaaggc aactggaaca
     1201 tgggaccacc tggtggacta caggaattta atttcattgt accaactgga aaaactggat
     1261 taataatagg aaaaggaggt gaaaccataa aaagcataag ccaacagtct ggtgcaagaa
     1321 tagaacttca gagaaatcct ccacctaatg cagatcctaa tatgaagtta tttacaattc
     1381 gtggcactcc acagcaaata gactatgctc ggcaactcat agaagaaaag attggtggcc
     1441 cagtaaatcc tttagggcca cctgtacccc atgggcccca tggtgtccca ggcccccacg
     1501 ggcctcctgg gccccctggg cctggaactc cgatgggacc atataaccct gcaccttata
     1561 atccgggacc acctggccct gctcctcatg gtcctccagc cccttatgct ccccaagggt
     1621 ggggaaatgc gtatccacat tggcagcaac aggcccctcc agatccagct aaaacaggaa
     1681 cagatccaaa ttcagcagct tgggctgctt attatgctca ctattatcaa caacaagcac
     1741 agccaccgcc tgcagctcct gccggtgcac caactacaac ccaaaccaat ggacaaggta
     1801 actatggaga tcaacagaat ccagctccag ctggacaggt tgattatacc aaggcttggg
     1861 aagagtacta caagaaaatg ggtcaacaag ggcagacaca agattattca aaggcttggg
     1921 aggaatatta caagaagcaa ggtcaagcag ttcctgcccc tactggtgct ccaccaggtg
     1981 gtcagccaga ttatagtgca gcctgggctg agtactatag acaacaagca gcctactacg
     2041 cccagacaag tccccaggga atgccacagc atcctccagc acctcagggc caataataag
     2101 aagtggacaa tacagtattt gcttcattgt gtgggggaaa aaaacctttg ttaaatatat
     2161 ggatgcagac ggcttgatga agatcttaat tttgtttttg gtttaaaata gtgttttttc
     2221 tttctttctt tctttctttt tttttttttt ttttttttga aaatgtacaa aatatctatc
     2281 actactgata ggaggttaat atttctgtgt agaaatgaaa attggtttgt ttttagtatt
     2341 tagtgtagat gtacacattc cagcaaatgt atttgcaact attatgtggt caatgctttg
     2401 tgatataaat gtactttttt caatgtatac tttcactttt aaaatgcctg ttttgtgctt
     2461 tacaataaat gatatgaaac ctc
//
LOCUS       XM_032611367            2567 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X7, mRNA.
ACCESSION   XM_032611367
VERSION     XM_032611367.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2567
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 6
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             182..2179
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X7"
                     /protein_id="XP_032467258.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAKKVAPQ
                     NDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD
                     SGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKA
                     GLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI
                     RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP
                     DDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMG
                     PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTI
                     RGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPA
                     PYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYY
                     QQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPTGA
                     PPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ"
     misc_feature    536..760
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(539..544,548..550,554..556,578..586,590..598,
                     647..667,680..691,695..697)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(572..574,578..586,590..604,611..616,623..628,
                     641..652)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    800..1009
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(827..829,833..841,845..859,866..871,878..883,
                     896..907)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    1070..1273
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(1094..1111,1115..1129,1136..1141,1166..1168,
                     1172..1177,1205..1207)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1370..1585
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1397..1402,1406..1414,1418..1423,1427..1432,
                     1439..1444,1454..1456,1469..1471,1475..1480,1484..1486,
                     1517..1519)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    2048..>2110
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 cccacaccag cgcgttgctt caaaacatcg cgagattttc ttctttaagt ctccgcccct
       61 ctacggcacg atggtcgcac aagaatgtga tacagcctcg gcggccgcca ttttctttct
      121 ttcttagcag ttggttgaga ggtccctgcg aagaagcggt agcggccact gtagagtagg
      181 catggcagat tattcaacag tgcctccacc ctcctctggc tcagctggtg gtggaggcgg
      241 cggcggtggt ggtggaggag ttaacgatgc tttcaaagat gcgctgcaga gagcccgaca
      301 gattgcagca aaaattggag gtgatgctgg tacatcactg aattcaaatg actatggtta
      361 tgggggacag aaaagacctt tggaagatgg agatggctct tggacaagtc cgagcagtac
      421 aacacactgg gagggaatgc cctctccttt taaagatcag ccagatgcta agaaagttgc
      481 tcctcaaaat gactcttttg gaacacagtt accaccgatg catcagcagc aaagcagatc
      541 tgtaatgaca gaagaataca aagttccaga tgggatggtt ggatttataa ttggcagagg
      601 aggtgaacag atctcacgca tacaacagga atctggatgc aaaatacaga tagctcctga
      661 cagtggtggc cttccagaaa ggtcttgtat gttaactgga acccctgagt ctgtccaatc
      721 agcaaaacgg ttactggacc agattgttga aaaaggaaga ccagcccctg gcttccatca
      781 tggtgatggg ccaggaaatg cggttcaaga aatcatgatt ccagctagca aagcaggatt
      841 agtcattgga aaggggggag agactattaa acaacttcag gaacgggctg gagttaaaat
      901 ggttatgatc caagatggac ctcagaacac tggtgctgac aaacctctta ggattacagg
      961 ggacccatac aaagttcaac aagccaagga aatggtgtta gaattaattc gtgatcaagg
     1021 tggtttcaga gaagttcgaa atgagtatgg gtcaagaata ggaggaaatg aaggaataga
     1081 tgtccccatt ccaagatttg ctgttggcat cgtaatagga agaaatggag agatgattaa
     1141 aaaaatacaa aatgatgctg gtgttcgaat tcagtttaag ccagatgacg gaacgacacc
     1201 agatagaata gcacaaataa caggacctcc agaccgatgt caacatgctg cagaaattat
     1261 tacagacctt ctccgaagtg ttcaggctgg taatcctggt ggacctgggc ctggtggtcg
     1321 aggaagaggt agaggtcaag gcaactggaa catgggacca cctggtggac tacaggaatt
     1381 taatttcatt gtaccaactg gaaaaactgg attaataata ggaaaaggag gtgaaaccat
     1441 aaaaagcata agccaacagt ctggtgcaag aatagaactt cagagaaatc ctccacctaa
     1501 tgcagatcct aatatgaagt tatttacaat tcgtggcact ccacagcaaa tagactatgc
     1561 tcggcaactc atagaagaaa agattggtgg cccagtaaat cctttagggc cacctgtacc
     1621 ccatgggccc catggtgtcc caggccccca cgggcctcct gggccccctg ggcctggaac
     1681 tccgatggga ccatataacc ctgcacctta taatccggga ccacctggcc ctgctcctca
     1741 tggtcctcca gccccttatg ctccccaagg gtggggaaat gcgtatccac attggcagca
     1801 acaggcccct ccagatccag ctaaaacagg aacagatcca aattcagcag cttgggctgc
     1861 ttattatgct cactattatc aacaacaagc acagccaccg cctgcagctc ctgccggtgc
     1921 accaactaca acccaaacca atggacaagg agatcaacag aatccagctc cagctggaca
     1981 ggttgattat accaaggctt gggaagagta ctacaagaaa atgggtcaag cagttcctgc
     2041 ccctactggt gctccaccag gtggtcagcc agattatagt gcagcctggg ctgagtacta
     2101 tagacaacaa gcagcctact acgcccagac aagtccccag ggaatgccac agcatcctcc
     2161 agcacctcag ggccaataat aagaagtgga caatacagta tttgcttcat tgtgtggggg
     2221 aaaaaaacct ttgttaaata tatggatgca gacggcttga tgaagatctt aattttgttt
     2281 ttggtttaaa atagtgtttt ttctttcttt ctttctttct tttttttttt tttttttttt
     2341 tgaaaatgta caaaatatct atcactactg ataggaggtt aatatttctg tgtagaaatg
     2401 aaaattggtt tgtttttagt atttagtgta gatgtacaca ttccagcaaa tgtatttgca
     2461 actattatgt ggtcaatgct ttgtgatata aatgtacttt tttcaatgta tactttcact
     2521 tttaaaatgc ctgttttgtg ctttacaata aatgatatga aacctcc
//
LOCUS       XM_032611374            2486 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X8, mRNA.
ACCESSION   XM_032611374
VERSION     XM_032611374.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2486
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             105..2099
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X8"
                     /protein_id="XP_032467265.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQSRSVMT
                     EEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSA
                     KRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVK
                     MVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE
                     GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQH
                     AAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLII
                     GKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGP
                     VNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQ
                     GWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTN
                     GQGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQDYSKAWEEYYKKQGQAVPAPTGAP
                     PGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ"
     misc_feature    396..620
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(399..404,408..410,414..416,438..446,450..458,
                     507..527,540..551,555..557)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(432..434,438..446,450..464,471..476,483..488,
                     501..512)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    660..869
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(687..689,693..701,705..719,726..731,738..743,
                     756..767)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    930..1133
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(954..971,975..989,996..1001,1026..1028,1032..1037,
                     1065..1067)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1230..1445
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1257..1262,1266..1274,1278..1283,1287..1292,
                     1299..1304,1314..1316,1329..1331,1335..1340,1344..1346,
                     1377..1379)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    1968..>2030
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 cacaagaatg tgatacagcc tcggcggccg ccattttctt tctttcttag cagttggttg
       61 agaggtccct gcgaagaagc ggtagcggcc actgtagagt aggcatggca gattattcaa
      121 cagtgcctcc accctcctct ggctcagctg gtggtggagg cggcggcggt ggtggtggag
      181 gagttaacga tgctttcaaa gatgcgctgc agagagcccg acagattgca gcaaaaattg
      241 gaggtgatgc tggtacatca ctgaattcaa atgactatgg ttatggggga cagaaaagac
      301 ctttggaaga tggagatcag ccagatgcta agaaagttgc tcctcaaaat gactcttttg
      361 gaacacagtt accaccgatg catcagcagc aaagcagatc tgtaatgaca gaagaataca
      421 aagttccaga tgggatggtt ggatttataa ttggcagagg aggtgaacag atctcacgca
      481 tacaacagga atctggatgc aaaatacaga tagctcctga cagtggtggc cttccagaaa
      541 ggtcttgtat gttaactgga acccctgagt ctgtccaatc agcaaaacgg ttactggacc
      601 agattgttga aaaaggaaga ccagcccctg gcttccatca tggtgatggg ccaggaaatg
      661 cggttcaaga aatcatgatt ccagctagca aagcaggatt agtcattgga aaggggggag
      721 agactattaa acaacttcag gaacgggctg gagttaaaat ggttatgatc caagatggac
      781 ctcagaacac tggtgctgac aaacctctta ggattacagg ggacccatac aaagttcaac
      841 aagccaagga aatggtgtta gaattaattc gtgatcaagg tggtttcaga gaagttcgaa
      901 atgagtatgg gtcaagaata ggaggaaatg aaggaataga tgtccccatt ccaagatttg
      961 ctgttggcat cgtaatagga agaaatggag agatgattaa aaaaatacaa aatgatgctg
     1021 gtgttcgaat tcagtttaag ccagatgacg gaacgacacc agatagaata gcacaaataa
     1081 caggacctcc agaccgatgt caacatgctg cagaaattat tacagacctt ctccgaagtg
     1141 ttcaggctgg taatcctggt ggacctgggc ctggtggtcg aggaagaggt agaggtcaag
     1201 gcaactggaa catgggacca cctggtggac tacaggaatt taatttcatt gtaccaactg
     1261 gaaaaactgg attaataata ggaaaaggag gtgaaaccat aaaaagcata agccaacagt
     1321 ctggtgcaag aatagaactt cagagaaatc ctccacctaa tgcagatcct aatatgaagt
     1381 tatttacaat tcgtggcact ccacagcaaa tagactatgc tcggcaactc atagaagaaa
     1441 agattggtgg cccagtaaat cctttagggc cacctgtacc ccatgggccc catggtgtcc
     1501 caggccccca cgggcctcct gggccccctg ggcctggaac tccgatggga ccatataacc
     1561 ctgcacctta taatccggga ccacctggcc ctgctcctca tggtcctcca gccccttatg
     1621 ctccccaagg gtggggaaat gcgtatccac attggcagca acaggcccct ccagatccag
     1681 ctaaaacagg aacagatcca aattcagcag cttgggctgc ttattatgct cactattatc
     1741 aacaacaagc acagccaccg cctgcagctc ctgccggtgc accaactaca acccaaacca
     1801 atggacaagg agatcaacag aatccagctc cagctggaca ggttgattat accaaggctt
     1861 gggaagagta ctacaagaaa atgggtcaac aagggcagac acaagattat tcaaaggctt
     1921 gggaggaata ttacaagaag caaggtcaag cagttcctgc ccctactggt gctccaccag
     1981 gtggtcagcc agattatagt gcagcctggg ctgagtacta tagacaacaa gcagcctact
     2041 acgcccagac aagtccccag ggaatgccac agcatcctcc agcacctcag ggccaataat
     2101 aagaagtgga caatacagta tttgcttcat tgtgtggggg aaaaaaacct ttgttaaata
     2161 tatggatgca gacggcttga tgaagatctt aattttgttt ttggtttaaa atagtgtttt
     2221 ttctttcttt ctttctttct tttttttttt tttttttttt tgaaaatgta caaaatatct
     2281 atcactactg ataggaggtt aatatttctg tgtagaaatg aaaattggtt tgtttttagt
     2341 atttagtgta gatgtacaca ttccagcaaa tgtatttgca actattatgt ggtcaatgct
     2401 ttgtgatata aatgtacttt tttcaatgta tactttcact tttaaaatgc ctgttttgtg
     2461 ctttacaata aatgatatga aacctc
//
LOCUS       XM_032611381            2422 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X9, mRNA.
ACCESSION   XM_032611381
VERSION     XM_032611381.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2422
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             95..2035
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X9"
                     /protein_id="XP_032467272.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQRSVMTE
                     EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK
                     RLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKM
                     VMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEG
                     IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHA
                     AEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIG
                     KGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPV
                     NPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQG
                     WGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNG
                     QGNYGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQ
                     AAYYAQTSPQGMPQHPPAPQGQ"
     misc_feature    383..607
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(386..391,395..397,401..403,425..433,437..445,
                     494..514,527..538,542..544)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(419..421,425..433,437..451,458..463,470..475,
                     488..499)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    647..856
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(674..676,680..688,692..706,713..718,725..730,
                     743..754)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    917..1120
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(941..958,962..976,983..988,1013..1015,1019..1024,
                     1052..1054)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1217..1432
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1244..1249,1253..1261,1265..1270,1274..1279,
                     1286..1291,1301..1303,1316..1318,1322..1327,1331..1333,
                     1364..1366)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    1904..>1966
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 tgatacagcc tcggcggccg ccattttctt tctttcttag cagttggttg agaggtccct
       61 gcgaagaagc ggtagcggcc actgtagagt aggcatggca gattattcaa cagtgcctcc
      121 accctcctct ggctcagctg gtggtggagg cggcggcggt ggtggtggag gagttaacga
      181 tgctttcaaa gatgcgctgc agagagcccg acagattgca gcaaaaattg gaggtgatgc
      241 tggtacatca ctgaattcaa atgactatgg ttatggggga cagaaaagac ctttggaaga
      301 tggagatcag ccagatgcta agaaagttgc tcctcaaaat gactcttttg gaacacagtt
      361 accaccgatg catcagcagc aaagatctgt aatgacagaa gaatacaaag ttccagatgg
      421 gatggttgga tttataattg gcagaggagg tgaacagatc tcacgcatac aacaggaatc
      481 tggatgcaaa atacagatag ctcctgacag tggtggcctt ccagaaaggt cttgtatgtt
      541 aactggaacc cctgagtctg tccaatcagc aaaacggtta ctggaccaga ttgttgaaaa
      601 aggaagacca gcccctggct tccatcatgg tgatgggcca ggaaatgcgg ttcaagaaat
      661 catgattcca gctagcaaag caggattagt cattggaaag gggggagaga ctattaaaca
      721 acttcaggaa cgggctggag ttaaaatggt tatgatccaa gatggacctc agaacactgg
      781 tgctgacaaa cctcttagga ttacagggga cccatacaaa gttcaacaag ccaaggaaat
      841 ggtgttagaa ttaattcgtg atcaaggtgg tttcagagaa gttcgaaatg agtatgggtc
      901 aagaatagga ggaaatgaag gaatagatgt ccccattcca agatttgctg ttggcatcgt
      961 aataggaaga aatggagaga tgattaaaaa aatacaaaat gatgctggtg ttcgaattca
     1021 gtttaagcca gatgacggaa cgacaccaga tagaatagca caaataacag gacctccaga
     1081 ccgatgtcaa catgctgcag aaattattac agaccttctc cgaagtgttc aggctggtaa
     1141 tcctggtgga cctgggcctg gtggtcgagg aagaggtaga ggtcaaggca actggaacat
     1201 gggaccacct ggtggactac aggaatttaa tttcattgta ccaactggaa aaactggatt
     1261 aataatagga aaaggaggtg aaaccataaa aagcataagc caacagtctg gtgcaagaat
     1321 agaacttcag agaaatcctc cacctaatgc agatcctaat atgaagttat ttacaattcg
     1381 tggcactcca cagcaaatag actatgctcg gcaactcata gaagaaaaga ttggtggccc
     1441 agtaaatcct ttagggccac ctgtacccca tgggccccat ggtgtcccag gcccccacgg
     1501 gcctcctggg ccccctgggc ctggaactcc gatgggacca tataaccctg caccttataa
     1561 tccgggacca cctggccctg ctcctcatgg tcctccagcc ccttatgctc cccaagggtg
     1621 gggaaatgcg tatccacatt ggcagcaaca ggcccctcca gatccagcta aaacaggaac
     1681 agatccaaat tcagcagctt gggctgctta ttatgctcac tattatcaac aacaagcaca
     1741 gccaccgcct gcagctcctg ccggtgcacc aactacaacc caaaccaatg gacaaggtaa
     1801 ctatggagat caacagaatc cagctccagc tggacaggtt gattatacca aggcttggga
     1861 agagtactac aagaaaatgg gtcaagcagt tcctgcccct actggtgctc caccaggtgg
     1921 tcagccagat tatagtgcag cctgggctga gtactataga caacaagcag cctactacgc
     1981 ccagacaagt ccccagggaa tgccacagca tcctccagca cctcagggcc aataataaga
     2041 agtggacaat acagtatttg cttcattgtg tgggggaaaa aaacctttgt taaatatatg
     2101 gatgcagacg gcttgatgaa gatcttaatt ttgtttttgg tttaaaatag tgttttttct
     2161 ttctttcttt ctttcttttt tttttttttt tttttttgaa aatgtacaaa atatctatca
     2221 ctactgatag gaggttaata tttctgtgta gaaatgaaaa ttggtttgtt tttagtattt
     2281 agtgtagatg tacacattcc agcaaatgta tttgcaacta ttatgtggtc aatgctttgt
     2341 gatataaatg tacttttttc aatgtatact ttcactttta aaatgcctgt tttgtgcttt
     2401 acaataaatg atatgaaacc tc
//
LOCUS       XM_032611389            2504 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X10, mRNA.
ACCESSION   XM_032611389
VERSION     XM_032611389.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2504
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 10
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             182..2116
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X10"
                     /protein_id="XP_032467280.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQSRSVMT
                     EEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSA
                     KRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVK
                     MVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE
                     GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQH
                     AAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLII
                     GKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGP
                     VNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQ
                     GWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTN
                     GQGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAA
                     YYAQTSPQGMPQHPPAPQGQ"
     misc_feature    473..697
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(476..481,485..487,491..493,515..523,527..535,
                     584..604,617..628,632..634)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(509..511,515..523,527..541,548..553,560..565,
                     578..589)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    737..946
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(764..766,770..778,782..796,803..808,815..820,
                     833..844)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    1007..1210
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(1031..1048,1052..1066,1073..1078,1103..1105,
                     1109..1114,1142..1144)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1307..1522
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1334..1339,1343..1351,1355..1360,1364..1369,
                     1376..1381,1391..1393,1406..1408,1412..1417,1421..1423,
                     1454..1456)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    1985..>2047
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 cccacaccag cgcgttgctt caaaacatcg cgagattttc ttctttaagt ctccgcccct
       61 ctacggcacg atggtcgcac aagaatgtga tacagcctcg gcggccgcca ttttctttct
      121 ttcttagcag ttggttgaga ggtccctgcg aagaagcggt agcggccact gtagagtagg
      181 catggcagat tattcaacag tgcctccacc ctcctctggc tcagctggtg gtggaggcgg
      241 cggcggtggt ggtggaggag ttaacgatgc tttcaaagat gcgctgcaga gagcccgaca
      301 gattgcagca aaaattggag gtgatgctgg tacatcactg aattcaaatg actatggtta
      361 tgggggacag aaaagacctt tggaagatgg agatcagcca gatgctaaga aagttgctcc
      421 tcaaaatgac tcttttggaa cacagttacc accgatgcat cagcagcaaa gcagatctgt
      481 aatgacagaa gaatacaaag ttccagatgg gatggttgga tttataattg gcagaggagg
      541 tgaacagatc tcacgcatac aacaggaatc tggatgcaaa atacagatag ctcctgacag
      601 tggtggcctt ccagaaaggt cttgtatgtt aactggaacc cctgagtctg tccaatcagc
      661 aaaacggtta ctggaccaga ttgttgaaaa aggaagacca gcccctggct tccatcatgg
      721 tgatgggcca ggaaatgcgg ttcaagaaat catgattcca gctagcaaag caggattagt
      781 cattggaaag gggggagaga ctattaaaca acttcaggaa cgggctggag ttaaaatggt
      841 tatgatccaa gatggacctc agaacactgg tgctgacaaa cctcttagga ttacagggga
      901 cccatacaaa gttcaacaag ccaaggaaat ggtgttagaa ttaattcgtg atcaaggtgg
      961 tttcagagaa gttcgaaatg agtatgggtc aagaatagga ggaaatgaag gaatagatgt
     1021 ccccattcca agatttgctg ttggcatcgt aataggaaga aatggagaga tgattaaaaa
     1081 aatacaaaat gatgctggtg ttcgaattca gtttaagcca gatgacggaa cgacaccaga
     1141 tagaatagca caaataacag gacctccaga ccgatgtcaa catgctgcag aaattattac
     1201 agaccttctc cgaagtgttc aggctggtaa tcctggtgga cctgggcctg gtggtcgagg
     1261 aagaggtaga ggtcaaggca actggaacat gggaccacct ggtggactac aggaatttaa
     1321 tttcattgta ccaactggaa aaactggatt aataatagga aaaggaggtg aaaccataaa
     1381 aagcataagc caacagtctg gtgcaagaat agaacttcag agaaatcctc cacctaatgc
     1441 agatcctaat atgaagttat ttacaattcg tggcactcca cagcaaatag actatgctcg
     1501 gcaactcata gaagaaaaga ttggtggccc agtaaatcct ttagggccac ctgtacccca
     1561 tgggccccat ggtgtcccag gcccccacgg gcctcctggg ccccctgggc ctggaactcc
     1621 gatgggacca tataaccctg caccttataa tccgggacca cctggccctg ctcctcatgg
     1681 tcctccagcc ccttatgctc cccaagggtg gggaaatgcg tatccacatt ggcagcaaca
     1741 ggcccctcca gatccagcta aaacaggaac agatccaaat tcagcagctt gggctgctta
     1801 ttatgctcac tattatcaac aacaagcaca gccaccgcct gcagctcctg ccggtgcacc
     1861 aactacaacc caaaccaatg gacaaggaga tcaacagaat ccagctccag ctggacaggt
     1921 tgattatacc aaggcttggg aagagtacta caagaaaatg ggtcaagcag ttcctgcccc
     1981 tactggtgct ccaccaggtg gtcagccaga ttatagtgca gcctgggctg agtactatag
     2041 acaacaagca gcctactacg cccagacaag tccccaggga atgccacagc atcctccagc
     2101 acctcagggc caataataag aagtggacaa tacagtattt gcttcattgt gtgggggaaa
     2161 aaaacctttg ttaaatatat ggatgcagac ggcttgatga agatcttaat tttgtttttg
     2221 gtttaaaata gtgttttttc tttctttctt tctttctttt tttttttttt ttttttttga
     2281 aaatgtacaa aatatctatc actactgata ggaggttaat atttctgtgt agaaatgaaa
     2341 attggtttgt ttttagtatt tagtgtagat gtacacattc cagcaaatgt atttgcaact
     2401 attatgtggt caatgctttg tgatataaat gtactttttt caatgtatac tttcactttt
     2461 aaaatgcctg ttttgtgctt tacaataaat gatatgaaac ctcc
//
LOCUS       XM_032611400            6770 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus far upstream element binding protein 1
            (FUBP1), transcript variant X11, mRNA.
ACCESSION   XM_032611400
VERSION     XM_032611400.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6770
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6770
                     /gene="FUBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 24 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743096"
     CDS             124..2055
                     /gene="FUBP1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X11"
                     /protein_id="XP_032467291.1"
                     /db_xref="GeneID:116743096"
                     /translation="MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAK
                     IGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQRSVMTE
                     EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK
                     RLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKM
                     VMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEG
                     IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHA
                     AEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIG
                     KGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPV
                     NPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQG
                     WGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNG
                     QGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAY
                     YAQTSPQGMPQHPPAPQGQ"
     misc_feature    412..636
                     /gene="FUBP1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt1; cd22478"
                     /db_xref="CDD:411906"
     misc_feature    order(415..420,424..426,430..432,454..462,466..474,
                     523..543,556..567,571..573)
                     /gene="FUBP1"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    order(448..450,454..462,466..480,487..492,499..504,
                     517..528)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411906"
     misc_feature    676..885
                     /gene="FUBP1"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt2; cd22481"
                     /db_xref="CDD:411909"
     misc_feature    order(703..705,709..717,721..735,742..747,754..759,
                     772..783)
                     /gene="FUBP1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411909"
     misc_feature    946..1149
                     /gene="FUBP1"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt3; cd22484"
                     /db_xref="CDD:411912"
     misc_feature    order(970..987,991..1005,1012..1017,1042..1044,1048..1053,
                     1081..1083)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411912"
     misc_feature    1246..1461
                     /gene="FUBP1"
                     /note="fourth type I K homology (KH) RNA-binding domain
                     found in far upstream element-binding protein 1 (FUBP1)
                     and similar proteins; Region: KH-I_FUBP1_rpt4; cd22487"
                     /db_xref="CDD:411915"
     misc_feature    order(1273..1278,1282..1290,1294..1299,1303..1308,
                     1315..1320,1330..1332,1345..1347,1351..1356,1360..1362,
                     1393..1395)
                     /gene="FUBP1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411915"
     misc_feature    1924..>1986
                     /gene="FUBP1"
                     /note="Domain of unknown function (DUF1897); Region:
                     DUF1897; pfam09005"
                     /db_xref="CDD:462653"
ORIGIN      
        1 ctctacggca cgatggtcgc acaagaatgt gatacagcct cggcggccgc cattttcttt
       61 ctttcttagc agttggttga gaggtccctg cgaagaagcg gtagcggcca ctgtagagta
      121 ggcatggcag attattcaac agtgcctcca ccctcctctg gctcagctgg tggtggaggc
      181 ggcggcggtg gtggtggagg agttaacgat gctttcaaag atgcgctgca gagagcccga
      241 cagattgcag caaaaattgg aggtgatgct ggtacatcac tgaattcaaa tgactatggt
      301 tatgggggac agaaaagacc tttggaagat ggagatcagc cagatgctaa gaaagttgct
      361 cctcaaaatg actcttttgg aacacagtta ccaccgatgc atcagcagca aagatctgta
      421 atgacagaag aatacaaagt tccagatggg atggttggat ttataattgg cagaggaggt
      481 gaacagatct cacgcataca acaggaatct ggatgcaaaa tacagatagc tcctgacagt
      541 ggtggccttc cagaaaggtc ttgtatgtta actggaaccc ctgagtctgt ccaatcagca
      601 aaacggttac tggaccagat tgttgaaaaa ggaagaccag cccctggctt ccatcatggt
      661 gatgggccag gaaatgcggt tcaagaaatc atgattccag ctagcaaagc aggattagtc
      721 attggaaagg ggggagagac tattaaacaa cttcaggaac gggctggagt taaaatggtt
      781 atgatccaag atggacctca gaacactggt gctgacaaac ctcttaggat tacaggggac
      841 ccatacaaag ttcaacaagc caaggaaatg gtgttagaat taattcgtga tcaaggtggt
      901 ttcagagaag ttcgaaatga gtatgggtca agaataggag gaaatgaagg aatagatgtc
      961 cccattccaa gatttgctgt tggcatcgta ataggaagaa atggagagat gattaaaaaa
     1021 atacaaaatg atgctggtgt tcgaattcag tttaagccag atgacggaac gacaccagat
     1081 agaatagcac aaataacagg acctccagac cgatgtcaac atgctgcaga aattattaca
     1141 gaccttctcc gaagtgttca ggctggtaat cctggtggac ctgggcctgg tggtcgagga
     1201 agaggtagag gtcaaggcaa ctggaacatg ggaccacctg gtggactaca ggaatttaat
     1261 ttcattgtac caactggaaa aactggatta ataataggaa aaggaggtga aaccataaaa
     1321 agcataagcc aacagtctgg tgcaagaata gaacttcaga gaaatcctcc acctaatgca
     1381 gatcctaata tgaagttatt tacaattcgt ggcactccac agcaaataga ctatgctcgg
     1441 caactcatag aagaaaagat tggtggccca gtaaatcctt tagggccacc tgtaccccat
     1501 gggccccatg gtgtcccagg cccccacggg cctcctgggc cccctgggcc tggaactccg
     1561 atgggaccat ataaccctgc accttataat ccgggaccac ctggccctgc tcctcatggt
     1621 cctccagccc cttatgctcc ccaagggtgg ggaaatgcgt atccacattg gcagcaacag
     1681 gcccctccag atccagctaa aacaggaaca gatccaaatt cagcagcttg ggctgcttat
     1741 tatgctcact attatcaaca acaagcacag ccaccgcctg cagctcctgc cggtgcacca
     1801 actacaaccc aaaccaatgg acaaggagat caacagaatc cagctccagc tggacaggtt
     1861 gattatacca aggcttggga agagtactac aagaaaatgg gtcaagcagt tcctgcccct
     1921 actggtgctc caccaggtgg tcagccagat tatagtgcag cctgggctga gtactataga
     1981 caacaagcag cctactacgc ccagacaagt ccccagggaa tgccacagca tcctccagca
     2041 cctcagggcc aataataaga agtggacaat acagtatttg cttcattgtg tgggggaaaa
     2101 aaacctttgt taaatatatg gatgcagacg gcttgatgaa gatcttaatt ttgtttttgg
     2161 tttaaaatag tgttttttct ttctttcttt ctttcttttt tttttttttt tttttttgaa
     2221 aatgtacaaa atatctatca ctactgatag gaggttaata tttctgtgta gaaatgaaaa
     2281 ttggtttgtt tttagtattt agtgtagatg tacacattcc agcaaatgta tttgcaacta
     2341 ttatgtggtc aatgctttgt gatataaatg tacttttttc aatgtatact ttcactttta
     2401 aaatgcctgt tttgtgcttt acaataaatg atatgaaacc tcctgtgtcg gtaagttgga
     2461 tatgtgggta tttaaaggat tcataatttc ttagcaatga taaattaaga tacatataca
     2521 caaatatata agctttcccc atgaaatatt aatttgagtt tttaaacact ggcatgtttt
     2581 tttccccctt gcagtatagt agtagattgg aggatctttt ccatttattg tatttggctg
     2641 tttcagcaca agtaatcctg atatcttcat ttttttcccc ttctgtttga ttaaaaactg
     2701 catgtgtgta cagtgatctt ttggcatact tccattgcat taacagtgaa atttcctttt
     2761 atacatgacc actgtttcag acctgtactg ctgctataac agttaacctt tctgttttta
     2821 atttgataat tacttgattt ccaagactgt ttcagttttc ggatagtgaa tatgagtagt
     2881 ctataagaac agttttttca tgtaaagcag ctcttgcaaa tgtatacgat attagagtgt
     2941 ttctttctaa atttagggta gaaaaagtag tagtgtgcaa aaagtatagc cacagtgcat
     3001 ctgccattga aacattattg gggtatgaaa atgttcaagc tttttttttc ttttttttct
     3061 ttttgcagta tagataagct ttgttttgta aatgcacaag tccaatcatt gaatcaactt
     3121 aattttttta tgtacttaaa atcattttat tactctataa cactcatgct gaagttctga
     3181 tattttgttg aaatccattg ttttactctt tgcatatttg ttggctcttt gcatattaat
     3241 atattagact acatgcaaat acagtctgtc ttgccattgt ctgttgaagt gcaggtttga
     3301 tccagccagt atagaactag ctctgtaggg gtgaggagga ctgtgctgtg tatcatcctt
     3361 gattgtgttc cttcaaggag cattgcactg taagtacatc agaatgacaa attgatgaac
     3421 tgcaacagta tctttttgtc aatgttccac ataatgcaaa tgccatactt tgtgtgaata
     3481 ttatgttgga atacagtgcc tatatcttgg aaaaccataa ctgcttctta atttaacata
     3541 gaataattca taggtctgta ttttttttta aagtgagctt aatgggtaag tatttttgat
     3601 atgctttagc tatagctaaa gaaaactgat cattaacaaa gttgaatagt attactcatt
     3661 ggtgctccta aaatatattg tttttcagtg taaaacatgc atatcttata tattaatatg
     3721 aaagacttga aatgtatcag acagagtggt tttcagtttg caaatattaa gcaatgtagt
     3781 ggttttaaca ccatttccta tatatatata ctagttcttt cattggtggg ggagcaccat
     3841 ttgctgttct gaatatacta taaagaaaga tgtgcaagga cataaatgtt gagattactt
     3901 atagggtaga aaatagcagt acagttcatt gtagatgttt tgaaatgttg tttgactgtt
     3961 ttatagaacc tagagtgact tcccttaccc ttatttagat atggatatgt agttctagct
     4021 tcaagtttaa tagttaagga gttatctgtt atctttaaga gtagggtatt gatgtgaaca
     4081 gtttcagtat tttgcatgat actgttttat agatgaactt ttaggaaagt ggtacattaa
     4141 ataattaaac tgaagagata gttcagttgg attcaatatc ataactcaca aattggaggc
     4201 tgttgatttt gattcattta aggtttaaaa tctttattaa ttgcaaacag tgcaattatt
     4261 tatacttcac agtgccttcc cagaccttcc accttaggtt ctgctgcaaa aagcaacagg
     4321 taagcacaac ctaaggacat atataaataa atatttcagt acattaatgt tgtccctgtg
     4381 aggtttttgt ggttgtgtat tcaaaagcaa tctgctactg cttccccaaa gtgtattttg
     4441 ttatttatgc taccatttca gtggaaagtc tttaagttgt tcaaacaact gtttacattt
     4501 ctgggtaatg ttttttattt taatttttta aattaaaacg ggaaaaaatg atgagtagat
     4561 tgctgctgta attaaactac atccgaactt ttcccaaata tagaagaatt gttaaaattt
     4621 taaaaaggac agttacatag ttttcaggat ttaggaaatc atttggtcag acacttcaac
     4681 agccttcaca atctgtttat gattgacaag acattttctt tgccctccaa agctatggag
     4741 tctttatttt ttttcttatt cttgaactgt agtaactcag taaggacatt atgggtcaag
     4801 aatttcatta tgactttttt ttagacaatt cagttttcat aactttttta tatacactga
     4861 aaaaggaaaa aaattctaag aaatactggc agtatgtttt ggtaaaggca tgtgcatcag
     4921 tgaaatgtta actgtatagc aaataacctt tcataatctg tatagcaacc aatatttttc
     4981 tggtttataa ttctttaata actgacgctg cattttattt tttgccagtt taaaatgttt
     5041 gtgtgttctt atagatgatt ttaactggta catattttga gttaagatga atgtattaaa
     5101 gcagcatcat atcagttttg tttattcgat ttctaaaatg tgctgatcct tttaaaactc
     5161 ctgcttatct ttgcaacaaa gaaaaatatt caaaaatact gccttcattt tcacacacag
     5221 tgctgaagat gctgcaagca ccaaatcata gctcataaaa tcaggtcctg agatagttac
     5281 ccataagagg aatcctttga gtgtatgcca ttggtgagcc gatgagcatg gaccatagaa
     5341 gggctcaatg tagaaggtaa aattggcaaa tcataattga gaaaaatgaa atgttttccc
     5401 atacataata tatggtatag ggtgtaatgt acctgctttg atcacttttc attttaaagt
     5461 gctattcact tgatcttaaa tgttccatga actgttaaat tttgaaagtt atgtagttat
     5521 tgcaccacat ttatgtgtgt gtatgtgtgt tttaatagtc aatgataggt atgttaagat
     5581 tgatattaag gagctctttg aaccttaaga gcctgtcaag ttttggttag ttgtagtttg
     5641 catttttata aaacaaaata catatgaatg ctaatagata ttggggcatt gtttctatct
     5701 catgagaatt ttttttattc attatcataa gccttcactg atactgcaag cattttttaa
     5761 atggcgctaa tcttaacctt gaaataaatg gaaagcagaa aaggtgagcc agttgatttg
     5821 aatgcaatgg atgttaggag tggtagaaag aatgtttagc ttgaaattga tttattttat
     5881 ttagcactta aacttgacaa tgtgtttttg tttttaagat ttcttagtgt ggtagtactt
     5941 agaattctta tggtttgatg tttcttttag aaatgggaag tatactttca tttttaatta
     6001 atgaaaatgg ttttaatact aaaactagtg gtttaatact agttgtttat gagcattgta
     6061 aaatacatcc ttagacagat accttagtag ttaattacag gagtgggttt ggataggagt
     6121 gaacagagta ccttaagagg gaaatagaaa tgtattcaaa gtgataacat ttgtttgaat
     6181 actctgccag gagaaccact tctgcctgca aagttaatgt tgtctagaat aaggttgtag
     6241 aaattactaa ttaatgaaga tgtctttatt ttctgaaaat tctgcctcac tttaaaatgt
     6301 attttaacaa tacctagtta aagataattt tgactctgaa aataacctta ttttttgttt
     6361 agtcacttga gttttcttgc cacagtaaac ttttgaggga tttttttaaa ttggtgcttg
     6421 taagaaatca aataagtccc aggattttat tttcttcagt gataccccta tagaaactct
     6481 taaatgtatt tgcacatata tatatatttt ttcttatgca tgctcaatgc attttcgtcc
     6541 tgagaaaagt gttctctaca gaaactaccc gtgtaaaaag aagattggct taaaatggct
     6601 actgtgatgg gaacagtgtc ttagggagat gcagcttgga cttgaggtaa attgaatact
     6661 ttacaaactg tggtttagag tttgctttaa taccattgta tgtaaaaggg tacatgattg
     6721 ctgtaatttt gtattgatta tggtttcctc aataaaaaaa taaatgtaca
//
LOCUS       XM_032611413            7737 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nexilin F-actin binding protein (NEXN),
            transcript variant X1, mRNA.
ACCESSION   XM_032611413
VERSION     XM_032611413.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7737
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7737
                     /gene="NEXN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 39 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743136"
     CDS             290..2122
                     /gene="NEXN"
                     /codon_start=1
                     /product="nexilin isoform X1"
                     /protein_id="XP_032467304.1"
                     /db_xref="GeneID:116743136"
                     /translation="MNDISQKAEIKEMLASDDEEEVSSKVEKAYVPKLTGTVKGKFAE
                     MEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQIEDINNTGTESASEEGD
                     DSLLVTVVPVKSHKTSGKMKKNFEDLEKEQEEKERVRYEEDIRYEEQRRSLKEAKCLS
                     LVMDDELESEAKKESLSPGKLKLTFEELERQRQENRRKQAEEEARKRLEEERRAFEEA
                     RRQMVNEEEENQDTENIFKGYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKK
                     AFAEARRSMVVDDDSPEMYKTVSQESLTPGKLEINFEELLKQKMEEERRRTEEERKHK
                     LEMEKQEFEQLRQEMGEEEEENETFELSREYEELIKLKRSGSIQAKNLKSKFEKIGQL
                     SEKQIQKKIEEERARRRAIDLEIKEREAENFHEEEDVDIKPAKKSEAPFTHKVNMKAR
                     FERMAKAREEEEQRRIEEQKLLRMQFEQKEIDAALQKKREEEEEEDCSNMNGSTIEDE
                     AQTRSGAPWFKKPLKNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIE
                     RGETYCLYLPETFPEDEGEYMCKAVNNKGSAASTCILTIETDDY"
     misc_feature    <425..1456
                     /gene="NEXN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1835..2104
                     /gene="NEXN"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1886..1900
                     /gene="NEXN"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1925..1939
                     /gene="NEXN"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    2000..2014
                     /gene="NEXN"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2042..2059
                     /gene="NEXN"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2081..2092
                     /gene="NEXN"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gggaactggc ctcgtgtttt ggaacagctg cagccggcgt tgggcccgcc tggaatgcgg
       61 gaacaggctg cacaccagga cttttatgga aacttgctgc tggagccggc ggcggccaga
      121 gggctcgtag cggctggagc ggcggcggcc ggagcgccag gacccctgac cacaccccgg
      181 cgcccagagc ctgccagcgc gcaccccgga ccttcgcgtg tcgccggctc gaggcgggtg
      241 aaaaaaatta caaagcttca taatcacccc aagaccgcat agagcaaaca tgaatgatat
      301 ttctcaaaag gctgagatta aagaaatgct tgcttctgat gatgaggaag aggtatcttc
      361 taaagtagaa aaggcttacg tcccaaagct aacaggaact gttaaaggta aatttgctga
      421 aatggagaaa caaagacaag aggaacaaag gaagagaaca gaagaggaac gaaaacgcag
      481 aattgagcag gatatgttag aaaagaggaa gatacaacgt gaattagcaa aaagggctga
      541 gcagattgag gacataaaca atacgggaac tgaatcagca tcagaggaag gagatgattc
      601 actgcttgta acagtggtac ctgtcaaatc acacaaaaca tctggaaaaa tgaaaaagaa
      661 tttcgaagat ctagaaaaag aacaagaaga aaaggaaagg gtcaggtatg aagaagatat
      721 aagatatgaa gaacaacgtc ggtctctcaa ggaagcaaag tgtctttcat tggtcatgga
      781 cgatgaactg gaaagtgagg caaagaaaga gtcactttct cctggaaaat tgaaactgac
      841 tttcgaagaa ttggaaagac aaagacaaga aaaccgaagg aagcaagctg aggaggaagc
      901 aagaaaacgt ttagaagaag agaggcgtgc ttttgaagaa gcaaggcggc aaatggtaaa
      961 tgaagaggag gaaaaccaag acacagaaaa catttttaaa gggtaccgcc ctggtaaact
     1021 caaactcagt tttgaagaaa tagaaagaca aaggagagaa gatgaaaaaa ggaaagcaga
     1081 agaagaagcc agaagaagaa tagaggaaga aaagaaggca tttgctgaag caaggagaag
     1141 catggtagta gatgatgact ccccagagat gtataaaaca gtctctcaag aatctcttac
     1201 acctggaaaa ctagaaatta attttgaaga attattaaaa caaaaaatgg aagaagaaag
     1261 acgacgaaca gaggaggaac ggaagcataa gctagagatg gaaaaacagg aatttgaaca
     1321 actgagacaa gaaatgggag aggaagaaga agaaaatgaa acctttgaac tgagcaggga
     1381 atatgaagaa ttaatcaaat tgaaaaggag tggctctatt caagctaaaa atctaaaaag
     1441 caagtttgaa aaaattggac aattgtctga aaaacaaata cagaaaaaga tagaagaaga
     1501 acgagcaaga agaagagcaa ttgatcttga aattaaagag cgagaagcag aaaactttca
     1561 tgaggaagaa gatgttgata tcaagcctgc aaaaaaaagt gaggctccat ttactcataa
     1621 agtgaatatg aaagctagat ttgaacgaat ggctaaggca agagaagaag aagaacaaag
     1681 aagaattgaa gagcaaaagt tattacgcat gcagtttgaa caaaaggaaa ttgatgcagc
     1741 actacaaaag aaaagagaag aggaggaaga agaagattgt agcaacatga atggctccac
     1801 cattgaagat gaagcgcaaa ccagatcagg agctccgtgg tttaagaagc ctctaaaaaa
     1861 cacatcggtt gtagacagtg agccagttag atttactgtt aaagtaacag gagaacccaa
     1921 accagaaatt acatggtggt ttgaaggaga aatattgcag gatggagaag actatcaata
     1981 tattgaaaga ggagaaactt actgtcttta tttaccagaa actttcccag aagatgaagg
     2041 agagtatatg tgtaaagcag tgaacaataa aggctctgca gctagtacct gtattcttac
     2101 cattgaaact gacgactact aggtcccctt ccctctccct ggaacacaca ccctctctct
     2161 ccgactttct tactgcatcc atcctttctg tggcggggcc agaaaaggaa actggaagtg
     2221 ccactacgct gactcttcat tcctttcccc aactgtcttc acaacacaag ctcgtctgaa
     2281 aagtacctcc ttccttttca aatgagcacc agattcacat tacgcagtat acgttggtgt
     2341 gtaatttaat aaggccaagt gggaaattta ctcaattatt tctatcagaa cccatacaaa
     2401 ggctgcgtat ttcccatgtt tacagcagtg atgtttaaaa aaatcataaa tcggacatat
     2461 tttgcatgaa agaataacac ttatgagcta ttcacaccta aaattagtct gaaatagctg
     2521 agttaaggaa tttggaacct atcaatttga gtgggctttt ttcctcagta gttttatcat
     2581 tttgattgtt gtagtttcag aatctttctg aagcagagat ataagggggt aggggtgtca
     2641 tttctccctc tgggtggaga aaacaaaaaa actaaagact tttaagaaac aactgccaga
     2701 gcaaatctga tggaaaccac tgcctaatac agagttctga gtgttgagaa tatcaaacgt
     2761 acttttcaaa tgtgtgtgat atatattcaa gcttctaaaa gcaaatttat gttgtgacct
     2821 tgcctgaaca aattatattt taatgagaaa actttgtatt aacagttcat gcaggagaaa
     2881 acaatttcaa cataatcaaa gatttcaaga tctagaatta gatttaggga aaaatggcac
     2941 aatcttcaat tttgagtttt taaagtgagt ttgtaaataa ttagcaacca tgtactaatc
     3001 aagttgtttt atattttaat tgtctggaag acaattttat tttacaatgt aaacccataa
     3061 taaagtcact tctgtactta aaaaaaagtc tttcagtatt ttagaaaaga gacgaacatt
     3121 cccttataat attcaccaat gtacatttat ttttttattg aggaaaccat aatcaataca
     3181 aaattacagc aatcatgtac ccttttacat acaatggtat taaagcaaac tctaaaccac
     3241 agtttgtaaa gtattcaatt tacctcaagt ccaagctgca tctccctaag acactgttcc
     3301 catcacagta gccattttaa gccaatcttc tttttacacg ggtagtttct gtagagaaca
     3361 cttttctcag gacgaaaatg cattgagcat gcataagaaa aaatatatat atatgtgcaa
     3421 atacatttaa gagtttctat aggggtatca ctgaagaaaa taaaatcctg ggacttattt
     3481 gatttcttac aagcaccaat ttaaaaaaat ccctcaaaag tttactgtgg caagaaaact
     3541 caagtgacta aacaaaaaat aaggttattt tcagagtcaa aattatcttt aactaggtat
     3601 tgttaaaata cattttaaag tgaggcagaa ttttcagaaa ataaagacat cttcattaat
     3661 tagtaatttc tacaacctta ttctagacaa cattaacttt gcaggcagaa gtggttctcc
     3721 tggcagagta ttcaaacaaa tgttatcact ttgaatacat ttctatttcc ctcttaaggt
     3781 actctgttca ctcctatcca aacccactcc tgtaattaac tactaaggta tctgtctaag
     3841 gatgtatttt acaatgctca taaacaacta gtattaaacc actagtttta gtattaaaac
     3901 cattttcatt aattaaaaat gaaagtatac ttcccatttc taaaagaaac atcaaaccat
     3961 aagaattcta agtactacca cactaagaaa tcttaaaaac aaaaacacat tgtcaagttt
     4021 aagtgctaaa taaaataaat caatttcaag ctaaacattc tttctaccac tcctaacatc
     4081 cattgcattc aaatcaactg gctcaccttt tctgctttcc atttatttca aggttaagat
     4141 tagcgccatt taaaaaatgc ttgcagtatc agtgaaggct tatgataatg aataaaaaaa
     4201 attctcatga gatagaaaca atgccccaat atctattagc attcatatgt attttgtttt
     4261 ataaaaatgc aaactacaac taaccaaaac ttgacaggct cttaaggttc aaagagctcc
     4321 ttaatatcaa tcttaacata cctatcattg actattaaaa cacacataca cacacataaa
     4381 tgtggtgcaa taactacata actttcaaaa tttaacagtt catggaacat ttaagatcaa
     4441 gtgaatagca ctttaaaatg aaaagtgatc aaagcaggta cattacaccc tataccatat
     4501 attatgtatg ggaaaacatt tcatttttct caattatgat ttgccaattt taccttctac
     4561 attgagccct tctatggtcc atgctcatcg gctcaccaat ggcatacact caaaggattc
     4621 ctcttatggg taactatctc aggacctgat tttatgagct atgatttggt gcttgcagca
     4681 tcttcagcac tgtgtgtgaa aatgaaggca gtatttttga atatttttct ttgttgcaaa
     4741 gataagcagg agttttaaaa ggatcagcac attttagaaa tcgaataaac aaaactgata
     4801 tgatgctgct ttaatacatt catcttaact caaaatatgt accagttaaa atcatctata
     4861 agaacacaca aacattttaa actggcaaaa aataaaatgc agcgtcagtt attaaagaat
     4921 tataaaccag aaaaatattg gttgctatac agattatgaa aggttatttg ctatacagtt
     4981 aacatttcac tgatgcacat gcctttacca aaacatactg ccagtatttc ttagaatttt
     5041 tttccttttt cagtgtatat aaaaaagtta tgaaaactga attgtctaaa aaaaagtcat
     5101 aatgaaattc ttgacccata atgtccttac tgagttacta cagttcaaga ataagaaaaa
     5161 aaataaagac tccatagctt tggagggcaa agaaaatgtc ttgtcaatca taaacagatt
     5221 gtgaaggctg ttgaagtgtc tgaccaaatg atttcctaaa tcctgaaaac tatgtaactg
     5281 tcctttttaa aattttaaca attcttctat atttgggaaa agttcggatg tagtttaatt
     5341 acagcagcaa tctactcatc attttttccc gttttaattt aaaaaattaa aataaaaaac
     5401 attacccaga aatgtaaaca gttgtttgaa caacttaaag actttccact gaaatggtag
     5461 cataaataac aaaatacact ttggggaagc agtagcagat tgcttttgaa tacacaacca
     5521 caaaaacctc acagggacaa cattaatgta ctgaaatatt tatttatata tgtccttagg
     5581 ttgtgcttac ctgttgcttt ttgcagcaga acctaaggtg gaaggtctgg gaaggcactg
     5641 tgaagtataa ataattgcac tgtttgcaat taataaagat tttaaacctt aaatgaatca
     5701 aaatcaacag cctccaattt gtgagttatg atattgaatc caactgaact atctcttcag
     5761 tttaattatt taatgtacca ctttcctaaa agttcatcta taaaacagta tcatgcaaaa
     5821 tactgaaact gttcacatca ataccctact cttaaagata acagataact ccttaactat
     5881 taaacttgaa gctagaacta catatccata tctaaataag ggtaagggaa gtcactctag
     5941 gttctataaa acagtcaaac aacatttcaa aacatctaca atgaactgta ctgctatttt
     6001 ctaccctata agtaatctca acatttatgt ccttgcacat ctttctttat agtatattca
     6061 gaacagcaaa tggtgctccc ccaccaatga aagaactagt atatatatat aggaaatggt
     6121 gttaaaacca ctacattgct taatatttgc aaactgaaaa ccactctgtc tgatacattt
     6181 caagtctttc atattaatat ataagatatg catgttttac actgaaaaac aatatatttt
     6241 aggagcacca atgagtaata ctattcaact ttgttaatga tcagttttct ttagctatag
     6301 ctaaagcata tcaaaaatac ttacccatta agctcacttt aaaaaaaaat acagacctat
     6361 gaattattct atgttaaatt aagaagcagt tatggttttc caagatatag gcactgtatt
     6421 ccaacataat attcacacaa agtatggcat ttgcattatg tggaacattg acaaaaagat
     6481 actgttgcag ttcatcaatt tgtcattctg atgtacttac agtgcaatgc tccttgaagg
     6541 aacacaatca aggatgatac acagcacagt cctcctcacc cctacagagc tagttctata
     6601 ctggctggat caaacctgca cttcaacaga caatggcaag acagactgta tttgcatgta
     6661 gtctaatata ttaatatgca aagagccaac aaatatgcaa agagtaaaac aatggatttc
     6721 aacaaaatat cagaacttca gcatgagtgt tatagagtaa taaaatgatt ttaagtacat
     6781 aaaaaaatta agttgattca atgattggac ttgtgcattt acaaaacaaa gcttatctat
     6841 actgcaaaaa gaaaaaaaag aaaaaaaaag cttgaacatt ttcatacccc aataatgttt
     6901 caatggcaga tgcactgtgg ctatactttt tgcacactac tactttttct accctaaatt
     6961 tagaaagaaa cactctaata tcgtatacat ttgcaagagc tgctttacat gaaaaaactg
     7021 ttcttataga ctactcatat tcactatccg aaaactgaaa cagtcttgga aatcaagtaa
     7081 ttatcaaatt aaaaacagaa aggttaactg ttatagcagc agtacaggtc tgaaacagtg
     7141 gtcatgtata aaaggaaatt tcactgttaa tgcaatggaa gtatgccaaa agatcactgt
     7201 acacacatgc agtttttaat caaacagaag gggaaaaaaa tgaagatatc aggattactt
     7261 gtgctgaaac agccaaatac aataaatgga aaagatcctc caatctacta ctatactgca
     7321 agggggaaaa aaacatgcca gtgtttaaaa actcaaatta atatttcatg gggaaagctt
     7381 atatatttgt gtatatgtat cttaatttat cattgctaag aaattatgaa tcctttaaat
     7441 acccacatat ccaacttacc gacacaggag gtttcatatc atttattgta aagcacaaaa
     7501 caggcatttt aaaagtgaaa gtatacattg aaaaaagtac atttatatca caaagcattg
     7561 accacataat agttgcaaat acatttgctg gaatgtgtac atctacacta aatactaaaa
     7621 acaaaccaat tttcatttct acacagaaat attaacctcc tatcagtagt gatagatatt
     7681 ttgtacattt tcaaaaaaaa aaaaaaaaaa aaaagaaaga aagaaagaaa gaaaaaa
//
LOCUS       XM_032611421            7625 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nexilin F-actin binding protein (NEXN),
            transcript variant X2, mRNA.
ACCESSION   XM_032611421
VERSION     XM_032611421.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7625
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7625
                     /gene="NEXN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743136"
     CDS             178..2010
                     /gene="NEXN"
                     /codon_start=1
                     /product="nexilin isoform X1"
                     /protein_id="XP_032467312.1"
                     /db_xref="GeneID:116743136"
                     /translation="MNDISQKAEIKEMLASDDEEEVSSKVEKAYVPKLTGTVKGKFAE
                     MEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQIEDINNTGTESASEEGD
                     DSLLVTVVPVKSHKTSGKMKKNFEDLEKEQEEKERVRYEEDIRYEEQRRSLKEAKCLS
                     LVMDDELESEAKKESLSPGKLKLTFEELERQRQENRRKQAEEEARKRLEEERRAFEEA
                     RRQMVNEEEENQDTENIFKGYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKK
                     AFAEARRSMVVDDDSPEMYKTVSQESLTPGKLEINFEELLKQKMEEERRRTEEERKHK
                     LEMEKQEFEQLRQEMGEEEEENETFELSREYEELIKLKRSGSIQAKNLKSKFEKIGQL
                     SEKQIQKKIEEERARRRAIDLEIKEREAENFHEEEDVDIKPAKKSEAPFTHKVNMKAR
                     FERMAKAREEEEQRRIEEQKLLRMQFEQKEIDAALQKKREEEEEEDCSNMNGSTIEDE
                     AQTRSGAPWFKKPLKNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIE
                     RGETYCLYLPETFPEDEGEYMCKAVNNKGSAASTCILTIETDDY"
     misc_feature    <313..1344
                     /gene="NEXN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1723..1992
                     /gene="NEXN"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1774..1788
                     /gene="NEXN"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1813..1827
                     /gene="NEXN"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1888..1902
                     /gene="NEXN"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1930..1947
                     /gene="NEXN"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1969..1980
                     /gene="NEXN"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 agcgccagga cccctgacca caccccggcg cccagagcct gccagcgcgc accccggacc
       61 ttcgcgtgtc gccggctcga ggcgggttat tacagaatat tgagcagagt tccctgtgct
      121 atacagtgaa aaaaattaca aagcttcata atcaccccaa gaccgcatag agcaaacatg
      181 aatgatattt ctcaaaaggc tgagattaaa gaaatgcttg cttctgatga tgaggaagag
      241 gtatcttcta aagtagaaaa ggcttacgtc ccaaagctaa caggaactgt taaaggtaaa
      301 tttgctgaaa tggagaaaca aagacaagag gaacaaagga agagaacaga agaggaacga
      361 aaacgcagaa ttgagcagga tatgttagaa aagaggaaga tacaacgtga attagcaaaa
      421 agggctgagc agattgagga cataaacaat acgggaactg aatcagcatc agaggaagga
      481 gatgattcac tgcttgtaac agtggtacct gtcaaatcac acaaaacatc tggaaaaatg
      541 aaaaagaatt tcgaagatct agaaaaagaa caagaagaaa aggaaagggt caggtatgaa
      601 gaagatataa gatatgaaga acaacgtcgg tctctcaagg aagcaaagtg tctttcattg
      661 gtcatggacg atgaactgga aagtgaggca aagaaagagt cactttctcc tggaaaattg
      721 aaactgactt tcgaagaatt ggaaagacaa agacaagaaa accgaaggaa gcaagctgag
      781 gaggaagcaa gaaaacgttt agaagaagag aggcgtgctt ttgaagaagc aaggcggcaa
      841 atggtaaatg aagaggagga aaaccaagac acagaaaaca tttttaaagg gtaccgccct
      901 ggtaaactca aactcagttt tgaagaaata gaaagacaaa ggagagaaga tgaaaaaagg
      961 aaagcagaag aagaagccag aagaagaata gaggaagaaa agaaggcatt tgctgaagca
     1021 aggagaagca tggtagtaga tgatgactcc ccagagatgt ataaaacagt ctctcaagaa
     1081 tctcttacac ctggaaaact agaaattaat tttgaagaat tattaaaaca aaaaatggaa
     1141 gaagaaagac gacgaacaga ggaggaacgg aagcataagc tagagatgga aaaacaggaa
     1201 tttgaacaac tgagacaaga aatgggagag gaagaagaag aaaatgaaac ctttgaactg
     1261 agcagggaat atgaagaatt aatcaaattg aaaaggagtg gctctattca agctaaaaat
     1321 ctaaaaagca agtttgaaaa aattggacaa ttgtctgaaa aacaaataca gaaaaagata
     1381 gaagaagaac gagcaagaag aagagcaatt gatcttgaaa ttaaagagcg agaagcagaa
     1441 aactttcatg aggaagaaga tgttgatatc aagcctgcaa aaaaaagtga ggctccattt
     1501 actcataaag tgaatatgaa agctagattt gaacgaatgg ctaaggcaag agaagaagaa
     1561 gaacaaagaa gaattgaaga gcaaaagtta ttacgcatgc agtttgaaca aaaggaaatt
     1621 gatgcagcac tacaaaagaa aagagaagag gaggaagaag aagattgtag caacatgaat
     1681 ggctccacca ttgaagatga agcgcaaacc agatcaggag ctccgtggtt taagaagcct
     1741 ctaaaaaaca catcggttgt agacagtgag ccagttagat ttactgttaa agtaacagga
     1801 gaacccaaac cagaaattac atggtggttt gaaggagaaa tattgcagga tggagaagac
     1861 tatcaatata ttgaaagagg agaaacttac tgtctttatt taccagaaac tttcccagaa
     1921 gatgaaggag agtatatgtg taaagcagtg aacaataaag gctctgcagc tagtacctgt
     1981 attcttacca ttgaaactga cgactactag gtccccttcc ctctccctgg aacacacacc
     2041 ctctctctcc gactttctta ctgcatccat cctttctgtg gcggggccag aaaaggaaac
     2101 tggaagtgcc actacgctga ctcttcattc ctttccccaa ctgtcttcac aacacaagct
     2161 cgtctgaaaa gtacctcctt ccttttcaaa tgagcaccag attcacatta cgcagtatac
     2221 gttggtgtgt aatttaataa ggccaagtgg gaaatttact caattatttc tatcagaacc
     2281 catacaaagg ctgcgtattt cccatgttta cagcagtgat gtttaaaaaa atcataaatc
     2341 ggacatattt tgcatgaaag aataacactt atgagctatt cacacctaaa attagtctga
     2401 aatagctgag ttaaggaatt tggaacctat caatttgagt gggctttttt cctcagtagt
     2461 tttatcattt tgattgttgt agtttcagaa tctttctgaa gcagagatat aagggggtag
     2521 gggtgtcatt tctccctctg ggtggagaaa acaaaaaaac taaagacttt taagaaacaa
     2581 ctgccagagc aaatctgatg gaaaccactg cctaatacag agttctgagt gttgagaata
     2641 tcaaacgtac ttttcaaatg tgtgtgatat atattcaagc ttctaaaagc aaatttatgt
     2701 tgtgaccttg cctgaacaaa ttatatttta atgagaaaac tttgtattaa cagttcatgc
     2761 aggagaaaac aatttcaaca taatcaaaga tttcaagatc tagaattaga tttagggaaa
     2821 aatggcacaa tcttcaattt tgagttttta aagtgagttt gtaaataatt agcaaccatg
     2881 tactaatcaa gttgttttat attttaattg tctggaagac aattttattt tacaatgtaa
     2941 acccataata aagtcacttc tgtacttaaa aaaaagtctt tcagtatttt agaaaagaga
     3001 cgaacattcc cttataatat tcaccaatgt acatttattt ttttattgag gaaaccataa
     3061 tcaatacaaa attacagcaa tcatgtaccc ttttacatac aatggtatta aagcaaactc
     3121 taaaccacag tttgtaaagt attcaattta cctcaagtcc aagctgcatc tccctaagac
     3181 actgttccca tcacagtagc cattttaagc caatcttctt tttacacggg tagtttctgt
     3241 agagaacact tttctcagga cgaaaatgca ttgagcatgc ataagaaaaa atatatatat
     3301 atgtgcaaat acatttaaga gtttctatag gggtatcact gaagaaaata aaatcctggg
     3361 acttatttga tttcttacaa gcaccaattt aaaaaaatcc ctcaaaagtt tactgtggca
     3421 agaaaactca agtgactaaa caaaaaataa ggttattttc agagtcaaaa ttatctttaa
     3481 ctaggtattg ttaaaataca ttttaaagtg aggcagaatt ttcagaaaat aaagacatct
     3541 tcattaatta gtaatttcta caaccttatt ctagacaaca ttaactttgc aggcagaagt
     3601 ggttctcctg gcagagtatt caaacaaatg ttatcacttt gaatacattt ctatttccct
     3661 cttaaggtac tctgttcact cctatccaaa cccactcctg taattaacta ctaaggtatc
     3721 tgtctaagga tgtattttac aatgctcata aacaactagt attaaaccac tagttttagt
     3781 attaaaacca ttttcattaa ttaaaaatga aagtatactt cccatttcta aaagaaacat
     3841 caaaccataa gaattctaag tactaccaca ctaagaaatc ttaaaaacaa aaacacattg
     3901 tcaagtttaa gtgctaaata aaataaatca atttcaagct aaacattctt tctaccactc
     3961 ctaacatcca ttgcattcaa atcaactggc tcaccttttc tgctttccat ttatttcaag
     4021 gttaagatta gcgccattta aaaaatgctt gcagtatcag tgaaggctta tgataatgaa
     4081 taaaaaaaat tctcatgaga tagaaacaat gccccaatat ctattagcat tcatatgtat
     4141 tttgttttat aaaaatgcaa actacaacta accaaaactt gacaggctct taaggttcaa
     4201 agagctcctt aatatcaatc ttaacatacc tatcattgac tattaaaaca cacatacaca
     4261 cacataaatg tggtgcaata actacataac tttcaaaatt taacagttca tggaacattt
     4321 aagatcaagt gaatagcact ttaaaatgaa aagtgatcaa agcaggtaca ttacacccta
     4381 taccatatat tatgtatggg aaaacatttc atttttctca attatgattt gccaatttta
     4441 ccttctacat tgagcccttc tatggtccat gctcatcggc tcaccaatgg catacactca
     4501 aaggattcct cttatgggta actatctcag gacctgattt tatgagctat gatttggtgc
     4561 ttgcagcatc ttcagcactg tgtgtgaaaa tgaaggcagt atttttgaat atttttcttt
     4621 gttgcaaaga taagcaggag ttttaaaagg atcagcacat tttagaaatc gaataaacaa
     4681 aactgatatg atgctgcttt aatacattca tcttaactca aaatatgtac cagttaaaat
     4741 catctataag aacacacaaa cattttaaac tggcaaaaaa taaaatgcag cgtcagttat
     4801 taaagaatta taaaccagaa aaatattggt tgctatacag attatgaaag gttatttgct
     4861 atacagttaa catttcactg atgcacatgc ctttaccaaa acatactgcc agtatttctt
     4921 agaatttttt tcctttttca gtgtatataa aaaagttatg aaaactgaat tgtctaaaaa
     4981 aaagtcataa tgaaattctt gacccataat gtccttactg agttactaca gttcaagaat
     5041 aagaaaaaaa ataaagactc catagctttg gagggcaaag aaaatgtctt gtcaatcata
     5101 aacagattgt gaaggctgtt gaagtgtctg accaaatgat ttcctaaatc ctgaaaacta
     5161 tgtaactgtc ctttttaaaa ttttaacaat tcttctatat ttgggaaaag ttcggatgta
     5221 gtttaattac agcagcaatc tactcatcat tttttcccgt tttaatttaa aaaattaaaa
     5281 taaaaaacat tacccagaaa tgtaaacagt tgtttgaaca acttaaagac tttccactga
     5341 aatggtagca taaataacaa aatacacttt ggggaagcag tagcagattg cttttgaata
     5401 cacaaccaca aaaacctcac agggacaaca ttaatgtact gaaatattta tttatatatg
     5461 tccttaggtt gtgcttacct gttgcttttt gcagcagaac ctaaggtgga aggtctggga
     5521 aggcactgtg aagtataaat aattgcactg tttgcaatta ataaagattt taaaccttaa
     5581 atgaatcaaa atcaacagcc tccaatttgt gagttatgat attgaatcca actgaactat
     5641 ctcttcagtt taattattta atgtaccact ttcctaaaag ttcatctata aaacagtatc
     5701 atgcaaaata ctgaaactgt tcacatcaat accctactct taaagataac agataactcc
     5761 ttaactatta aacttgaagc tagaactaca tatccatatc taaataaggg taagggaagt
     5821 cactctaggt tctataaaac agtcaaacaa catttcaaaa catctacaat gaactgtact
     5881 gctattttct accctataag taatctcaac atttatgtcc ttgcacatct ttctttatag
     5941 tatattcaga acagcaaatg gtgctccccc accaatgaaa gaactagtat atatatatag
     6001 gaaatggtgt taaaaccact acattgctta atatttgcaa actgaaaacc actctgtctg
     6061 atacatttca agtctttcat attaatatat aagatatgca tgttttacac tgaaaaacaa
     6121 tatattttag gagcaccaat gagtaatact attcaacttt gttaatgatc agttttcttt
     6181 agctatagct aaagcatatc aaaaatactt acccattaag ctcactttaa aaaaaaatac
     6241 agacctatga attattctat gttaaattaa gaagcagtta tggttttcca agatataggc
     6301 actgtattcc aacataatat tcacacaaag tatggcattt gcattatgtg gaacattgac
     6361 aaaaagatac tgttgcagtt catcaatttg tcattctgat gtacttacag tgcaatgctc
     6421 cttgaaggaa cacaatcaag gatgatacac agcacagtcc tcctcacccc tacagagcta
     6481 gttctatact ggctggatca aacctgcact tcaacagaca atggcaagac agactgtatt
     6541 tgcatgtagt ctaatatatt aatatgcaaa gagccaacaa atatgcaaag agtaaaacaa
     6601 tggatttcaa caaaatatca gaacttcagc atgagtgtta tagagtaata aaatgatttt
     6661 aagtacataa aaaaattaag ttgattcaat gattggactt gtgcatttac aaaacaaagc
     6721 ttatctatac tgcaaaaaga aaaaaaagaa aaaaaaagct tgaacatttt cataccccaa
     6781 taatgtttca atggcagatg cactgtggct atactttttg cacactacta ctttttctac
     6841 cctaaattta gaaagaaaca ctctaatatc gtatacattt gcaagagctg ctttacatga
     6901 aaaaactgtt cttatagact actcatattc actatccgaa aactgaaaca gtcttggaaa
     6961 tcaagtaatt atcaaattaa aaacagaaag gttaactgtt atagcagcag tacaggtctg
     7021 aaacagtggt catgtataaa aggaaatttc actgttaatg caatggaagt atgccaaaag
     7081 atcactgtac acacatgcag tttttaatca aacagaaggg gaaaaaaatg aagatatcag
     7141 gattacttgt gctgaaacag ccaaatacaa taaatggaaa agatcctcca atctactact
     7201 atactgcaag ggggaaaaaa acatgccagt gtttaaaaac tcaaattaat atttcatggg
     7261 gaaagcttat atatttgtgt atatgtatct taatttatca ttgctaagaa attatgaatc
     7321 ctttaaatac ccacatatcc aacttaccga cacaggaggt ttcatatcat ttattgtaaa
     7381 gcacaaaaca ggcattttaa aagtgaaagt atacattgaa aaaagtacat ttatatcaca
     7441 aagcattgac cacataatag ttgcaaatac atttgctgga atgtgtacat ctacactaaa
     7501 tactaaaaac aaaccaattt tcatttctac acagaaatat taacctccta tcagtagtga
     7561 tagatatttt gtacattttc aaaaaaaaaa aaaaaaaaaa aagaaagaaa gaaagaaaga
     7621 aaaaa
//
LOCUS       XM_032611431            7602 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nexilin F-actin binding protein (NEXN),
            transcript variant X3, mRNA.
ACCESSION   XM_032611431
VERSION     XM_032611431.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7602
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7602
                     /gene="NEXN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743136"
     CDS             155..1987
                     /gene="NEXN"
                     /codon_start=1
                     /product="nexilin isoform X1"
                     /protein_id="XP_032467322.1"
                     /db_xref="GeneID:116743136"
                     /translation="MNDISQKAEIKEMLASDDEEEVSSKVEKAYVPKLTGTVKGKFAE
                     MEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQIEDINNTGTESASEEGD
                     DSLLVTVVPVKSHKTSGKMKKNFEDLEKEQEEKERVRYEEDIRYEEQRRSLKEAKCLS
                     LVMDDELESEAKKESLSPGKLKLTFEELERQRQENRRKQAEEEARKRLEEERRAFEEA
                     RRQMVNEEEENQDTENIFKGYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKK
                     AFAEARRSMVVDDDSPEMYKTVSQESLTPGKLEINFEELLKQKMEEERRRTEEERKHK
                     LEMEKQEFEQLRQEMGEEEEENETFELSREYEELIKLKRSGSIQAKNLKSKFEKIGQL
                     SEKQIQKKIEEERARRRAIDLEIKEREAENFHEEEDVDIKPAKKSEAPFTHKVNMKAR
                     FERMAKAREEEEQRRIEEQKLLRMQFEQKEIDAALQKKREEEEEEDCSNMNGSTIEDE
                     AQTRSGAPWFKKPLKNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIE
                     RGETYCLYLPETFPEDEGEYMCKAVNNKGSAASTCILTIETDDY"
     misc_feature    <290..1321
                     /gene="NEXN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1700..1969
                     /gene="NEXN"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1751..1765
                     /gene="NEXN"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1790..1804
                     /gene="NEXN"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1865..1879
                     /gene="NEXN"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1907..1924
                     /gene="NEXN"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1946..1957
                     /gene="NEXN"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 tgtctgtgca gtttcgggag ctttctcggt cctgcaggta gtgagcccta cggcggtgga
       61 gcgggtaccg gtcctcttgc tctgtcccag gggtcccagc aggtgaaaaa aattacaaag
      121 cttcataatc accccaagac cgcatagagc aaacatgaat gatatttctc aaaaggctga
      181 gattaaagaa atgcttgctt ctgatgatga ggaagaggta tcttctaaag tagaaaaggc
      241 ttacgtccca aagctaacag gaactgttaa aggtaaattt gctgaaatgg agaaacaaag
      301 acaagaggaa caaaggaaga gaacagaaga ggaacgaaaa cgcagaattg agcaggatat
      361 gttagaaaag aggaagatac aacgtgaatt agcaaaaagg gctgagcaga ttgaggacat
      421 aaacaatacg ggaactgaat cagcatcaga ggaaggagat gattcactgc ttgtaacagt
      481 ggtacctgtc aaatcacaca aaacatctgg aaaaatgaaa aagaatttcg aagatctaga
      541 aaaagaacaa gaagaaaagg aaagggtcag gtatgaagaa gatataagat atgaagaaca
      601 acgtcggtct ctcaaggaag caaagtgtct ttcattggtc atggacgatg aactggaaag
      661 tgaggcaaag aaagagtcac tttctcctgg aaaattgaaa ctgactttcg aagaattgga
      721 aagacaaaga caagaaaacc gaaggaagca agctgaggag gaagcaagaa aacgtttaga
      781 agaagagagg cgtgcttttg aagaagcaag gcggcaaatg gtaaatgaag aggaggaaaa
      841 ccaagacaca gaaaacattt ttaaagggta ccgccctggt aaactcaaac tcagttttga
      901 agaaatagaa agacaaagga gagaagatga aaaaaggaaa gcagaagaag aagccagaag
      961 aagaatagag gaagaaaaga aggcatttgc tgaagcaagg agaagcatgg tagtagatga
     1021 tgactcccca gagatgtata aaacagtctc tcaagaatct cttacacctg gaaaactaga
     1081 aattaatttt gaagaattat taaaacaaaa aatggaagaa gaaagacgac gaacagagga
     1141 ggaacggaag cataagctag agatggaaaa acaggaattt gaacaactga gacaagaaat
     1201 gggagaggaa gaagaagaaa atgaaacctt tgaactgagc agggaatatg aagaattaat
     1261 caaattgaaa aggagtggct ctattcaagc taaaaatcta aaaagcaagt ttgaaaaaat
     1321 tggacaattg tctgaaaaac aaatacagaa aaagatagaa gaagaacgag caagaagaag
     1381 agcaattgat cttgaaatta aagagcgaga agcagaaaac tttcatgagg aagaagatgt
     1441 tgatatcaag cctgcaaaaa aaagtgaggc tccatttact cataaagtga atatgaaagc
     1501 tagatttgaa cgaatggcta aggcaagaga agaagaagaa caaagaagaa ttgaagagca
     1561 aaagttatta cgcatgcagt ttgaacaaaa ggaaattgat gcagcactac aaaagaaaag
     1621 agaagaggag gaagaagaag attgtagcaa catgaatggc tccaccattg aagatgaagc
     1681 gcaaaccaga tcaggagctc cgtggtttaa gaagcctcta aaaaacacat cggttgtaga
     1741 cagtgagcca gttagattta ctgttaaagt aacaggagaa cccaaaccag aaattacatg
     1801 gtggtttgaa ggagaaatat tgcaggatgg agaagactat caatatattg aaagaggaga
     1861 aacttactgt ctttatttac cagaaacttt cccagaagat gaaggagagt atatgtgtaa
     1921 agcagtgaac aataaaggct ctgcagctag tacctgtatt cttaccattg aaactgacga
     1981 ctactaggtc cccttccctc tccctggaac acacaccctc tctctccgac tttcttactg
     2041 catccatcct ttctgtggcg gggccagaaa aggaaactgg aagtgccact acgctgactc
     2101 ttcattcctt tccccaactg tcttcacaac acaagctcgt ctgaaaagta cctccttcct
     2161 tttcaaatga gcaccagatt cacattacgc agtatacgtt ggtgtgtaat ttaataaggc
     2221 caagtgggaa atttactcaa ttatttctat cagaacccat acaaaggctg cgtatttccc
     2281 atgtttacag cagtgatgtt taaaaaaatc ataaatcgga catattttgc atgaaagaat
     2341 aacacttatg agctattcac acctaaaatt agtctgaaat agctgagtta aggaatttgg
     2401 aacctatcaa tttgagtggg cttttttcct cagtagtttt atcattttga ttgttgtagt
     2461 ttcagaatct ttctgaagca gagatataag ggggtagggg tgtcatttct ccctctgggt
     2521 ggagaaaaca aaaaaactaa agacttttaa gaaacaactg ccagagcaaa tctgatggaa
     2581 accactgcct aatacagagt tctgagtgtt gagaatatca aacgtacttt tcaaatgtgt
     2641 gtgatatata ttcaagcttc taaaagcaaa tttatgttgt gaccttgcct gaacaaatta
     2701 tattttaatg agaaaacttt gtattaacag ttcatgcagg agaaaacaat ttcaacataa
     2761 tcaaagattt caagatctag aattagattt agggaaaaat ggcacaatct tcaattttga
     2821 gtttttaaag tgagtttgta aataattagc aaccatgtac taatcaagtt gttttatatt
     2881 ttaattgtct ggaagacaat tttattttac aatgtaaacc cataataaag tcacttctgt
     2941 acttaaaaaa aagtctttca gtattttaga aaagagacga acattccctt ataatattca
     3001 ccaatgtaca tttatttttt tattgaggaa accataatca atacaaaatt acagcaatca
     3061 tgtacccttt tacatacaat ggtattaaag caaactctaa accacagttt gtaaagtatt
     3121 caatttacct caagtccaag ctgcatctcc ctaagacact gttcccatca cagtagccat
     3181 tttaagccaa tcttcttttt acacgggtag tttctgtaga gaacactttt ctcaggacga
     3241 aaatgcattg agcatgcata agaaaaaata tatatatatg tgcaaataca tttaagagtt
     3301 tctatagggg tatcactgaa gaaaataaaa tcctgggact tatttgattt cttacaagca
     3361 ccaatttaaa aaaatccctc aaaagtttac tgtggcaaga aaactcaagt gactaaacaa
     3421 aaaataaggt tattttcaga gtcaaaatta tctttaacta ggtattgtta aaatacattt
     3481 taaagtgagg cagaattttc agaaaataaa gacatcttca ttaattagta atttctacaa
     3541 ccttattcta gacaacatta actttgcagg cagaagtggt tctcctggca gagtattcaa
     3601 acaaatgtta tcactttgaa tacatttcta tttccctctt aaggtactct gttcactcct
     3661 atccaaaccc actcctgtaa ttaactacta aggtatctgt ctaaggatgt attttacaat
     3721 gctcataaac aactagtatt aaaccactag ttttagtatt aaaaccattt tcattaatta
     3781 aaaatgaaag tatacttccc atttctaaaa gaaacatcaa accataagaa ttctaagtac
     3841 taccacacta agaaatctta aaaacaaaaa cacattgtca agtttaagtg ctaaataaaa
     3901 taaatcaatt tcaagctaaa cattctttct accactccta acatccattg cattcaaatc
     3961 aactggctca ccttttctgc tttccattta tttcaaggtt aagattagcg ccatttaaaa
     4021 aatgcttgca gtatcagtga aggcttatga taatgaataa aaaaaattct catgagatag
     4081 aaacaatgcc ccaatatcta ttagcattca tatgtatttt gttttataaa aatgcaaact
     4141 acaactaacc aaaacttgac aggctcttaa ggttcaaaga gctccttaat atcaatctta
     4201 acatacctat cattgactat taaaacacac atacacacac ataaatgtgg tgcaataact
     4261 acataacttt caaaatttaa cagttcatgg aacatttaag atcaagtgaa tagcacttta
     4321 aaatgaaaag tgatcaaagc aggtacatta caccctatac catatattat gtatgggaaa
     4381 acatttcatt tttctcaatt atgatttgcc aattttacct tctacattga gcccttctat
     4441 ggtccatgct catcggctca ccaatggcat acactcaaag gattcctctt atgggtaact
     4501 atctcaggac ctgattttat gagctatgat ttggtgcttg cagcatcttc agcactgtgt
     4561 gtgaaaatga aggcagtatt tttgaatatt tttctttgtt gcaaagataa gcaggagttt
     4621 taaaaggatc agcacatttt agaaatcgaa taaacaaaac tgatatgatg ctgctttaat
     4681 acattcatct taactcaaaa tatgtaccag ttaaaatcat ctataagaac acacaaacat
     4741 tttaaactgg caaaaaataa aatgcagcgt cagttattaa agaattataa accagaaaaa
     4801 tattggttgc tatacagatt atgaaaggtt atttgctata cagttaacat ttcactgatg
     4861 cacatgcctt taccaaaaca tactgccagt atttcttaga atttttttcc tttttcagtg
     4921 tatataaaaa agttatgaaa actgaattgt ctaaaaaaaa gtcataatga aattcttgac
     4981 ccataatgtc cttactgagt tactacagtt caagaataag aaaaaaaata aagactccat
     5041 agctttggag ggcaaagaaa atgtcttgtc aatcataaac agattgtgaa ggctgttgaa
     5101 gtgtctgacc aaatgatttc ctaaatcctg aaaactatgt aactgtcctt tttaaaattt
     5161 taacaattct tctatatttg ggaaaagttc ggatgtagtt taattacagc agcaatctac
     5221 tcatcatttt ttcccgtttt aatttaaaaa attaaaataa aaaacattac ccagaaatgt
     5281 aaacagttgt ttgaacaact taaagacttt ccactgaaat ggtagcataa ataacaaaat
     5341 acactttggg gaagcagtag cagattgctt ttgaatacac aaccacaaaa acctcacagg
     5401 gacaacatta atgtactgaa atatttattt atatatgtcc ttaggttgtg cttacctgtt
     5461 gctttttgca gcagaaccta aggtggaagg tctgggaagg cactgtgaag tataaataat
     5521 tgcactgttt gcaattaata aagattttaa accttaaatg aatcaaaatc aacagcctcc
     5581 aatttgtgag ttatgatatt gaatccaact gaactatctc ttcagtttaa ttatttaatg
     5641 taccactttc ctaaaagttc atctataaaa cagtatcatg caaaatactg aaactgttca
     5701 catcaatacc ctactcttaa agataacaga taactcctta actattaaac ttgaagctag
     5761 aactacatat ccatatctaa ataagggtaa gggaagtcac tctaggttct ataaaacagt
     5821 caaacaacat ttcaaaacat ctacaatgaa ctgtactgct attttctacc ctataagtaa
     5881 tctcaacatt tatgtccttg cacatctttc tttatagtat attcagaaca gcaaatggtg
     5941 ctcccccacc aatgaaagaa ctagtatata tatataggaa atggtgttaa aaccactaca
     6001 ttgcttaata tttgcaaact gaaaaccact ctgtctgata catttcaagt ctttcatatt
     6061 aatatataag atatgcatgt tttacactga aaaacaatat attttaggag caccaatgag
     6121 taatactatt caactttgtt aatgatcagt tttctttagc tatagctaaa gcatatcaaa
     6181 aatacttacc cattaagctc actttaaaaa aaaatacaga cctatgaatt attctatgtt
     6241 aaattaagaa gcagttatgg ttttccaaga tataggcact gtattccaac ataatattca
     6301 cacaaagtat ggcatttgca ttatgtggaa cattgacaaa aagatactgt tgcagttcat
     6361 caatttgtca ttctgatgta cttacagtgc aatgctcctt gaaggaacac aatcaaggat
     6421 gatacacagc acagtcctcc tcacccctac agagctagtt ctatactggc tggatcaaac
     6481 ctgcacttca acagacaatg gcaagacaga ctgtatttgc atgtagtcta atatattaat
     6541 atgcaaagag ccaacaaata tgcaaagagt aaaacaatgg atttcaacaa aatatcagaa
     6601 cttcagcatg agtgttatag agtaataaaa tgattttaag tacataaaaa aattaagttg
     6661 attcaatgat tggacttgtg catttacaaa acaaagctta tctatactgc aaaaagaaaa
     6721 aaaagaaaaa aaaagcttga acattttcat accccaataa tgtttcaatg gcagatgcac
     6781 tgtggctata ctttttgcac actactactt tttctaccct aaatttagaa agaaacactc
     6841 taatatcgta tacatttgca agagctgctt tacatgaaaa aactgttctt atagactact
     6901 catattcact atccgaaaac tgaaacagtc ttggaaatca agtaattatc aaattaaaaa
     6961 cagaaaggtt aactgttata gcagcagtac aggtctgaaa cagtggtcat gtataaaagg
     7021 aaatttcact gttaatgcaa tggaagtatg ccaaaagatc actgtacaca catgcagttt
     7081 ttaatcaaac agaaggggaa aaaaatgaag atatcaggat tacttgtgct gaaacagcca
     7141 aatacaataa atggaaaaga tcctccaatc tactactata ctgcaagggg gaaaaaaaca
     7201 tgccagtgtt taaaaactca aattaatatt tcatggggaa agcttatata tttgtgtata
     7261 tgtatcttaa tttatcattg ctaagaaatt atgaatcctt taaataccca catatccaac
     7321 ttaccgacac aggaggtttc atatcattta ttgtaaagca caaaacaggc attttaaaag
     7381 tgaaagtata cattgaaaaa agtacattta tatcacaaag cattgaccac ataatagttg
     7441 caaatacatt tgctggaatg tgtacatcta cactaaatac taaaaacaaa ccaattttca
     7501 tttctacaca gaaatattaa cctcctatca gtagtgatag atattttgta cattttcaaa
     7561 aaaaaaaaaa aaaaaaaaag aaagaaagaa agaaagaaaa aa
//
LOCUS       XM_032611438            7519 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nexilin F-actin binding protein (NEXN),
            transcript variant X4, mRNA.
ACCESSION   XM_032611438
VERSION     XM_032611438.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7519
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7519
                     /gene="NEXN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743136"
     CDS             72..1904
                     /gene="NEXN"
                     /codon_start=1
                     /product="nexilin isoform X1"
                     /protein_id="XP_032467329.1"
                     /db_xref="GeneID:116743136"
                     /translation="MNDISQKAEIKEMLASDDEEEVSSKVEKAYVPKLTGTVKGKFAE
                     MEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQIEDINNTGTESASEEGD
                     DSLLVTVVPVKSHKTSGKMKKNFEDLEKEQEEKERVRYEEDIRYEEQRRSLKEAKCLS
                     LVMDDELESEAKKESLSPGKLKLTFEELERQRQENRRKQAEEEARKRLEEERRAFEEA
                     RRQMVNEEEENQDTENIFKGYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKK
                     AFAEARRSMVVDDDSPEMYKTVSQESLTPGKLEINFEELLKQKMEEERRRTEEERKHK
                     LEMEKQEFEQLRQEMGEEEEENETFELSREYEELIKLKRSGSIQAKNLKSKFEKIGQL
                     SEKQIQKKIEEERARRRAIDLEIKEREAENFHEEEDVDIKPAKKSEAPFTHKVNMKAR
                     FERMAKAREEEEQRRIEEQKLLRMQFEQKEIDAALQKKREEEEEEDCSNMNGSTIEDE
                     AQTRSGAPWFKKPLKNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIE
                     RGETYCLYLPETFPEDEGEYMCKAVNNKGSAASTCILTIETDDY"
     misc_feature    <207..1238
                     /gene="NEXN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1617..1886
                     /gene="NEXN"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1668..1682
                     /gene="NEXN"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1707..1721
                     /gene="NEXN"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1782..1796
                     /gene="NEXN"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1824..1841
                     /gene="NEXN"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1863..1874
                     /gene="NEXN"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 atacagcatc tgccatctag tgaaaaaaat tacaaagctt cataatcacc ccaagaccgc
       61 atagagcaaa catgaatgat atttctcaaa aggctgagat taaagaaatg cttgcttctg
      121 atgatgagga agaggtatct tctaaagtag aaaaggctta cgtcccaaag ctaacaggaa
      181 ctgttaaagg taaatttgct gaaatggaga aacaaagaca agaggaacaa aggaagagaa
      241 cagaagagga acgaaaacgc agaattgagc aggatatgtt agaaaagagg aagatacaac
      301 gtgaattagc aaaaagggct gagcagattg aggacataaa caatacggga actgaatcag
      361 catcagagga aggagatgat tcactgcttg taacagtggt acctgtcaaa tcacacaaaa
      421 catctggaaa aatgaaaaag aatttcgaag atctagaaaa agaacaagaa gaaaaggaaa
      481 gggtcaggta tgaagaagat ataagatatg aagaacaacg tcggtctctc aaggaagcaa
      541 agtgtctttc attggtcatg gacgatgaac tggaaagtga ggcaaagaaa gagtcacttt
      601 ctcctggaaa attgaaactg actttcgaag aattggaaag acaaagacaa gaaaaccgaa
      661 ggaagcaagc tgaggaggaa gcaagaaaac gtttagaaga agagaggcgt gcttttgaag
      721 aagcaaggcg gcaaatggta aatgaagagg aggaaaacca agacacagaa aacattttta
      781 aagggtaccg ccctggtaaa ctcaaactca gttttgaaga aatagaaaga caaaggagag
      841 aagatgaaaa aaggaaagca gaagaagaag ccagaagaag aatagaggaa gaaaagaagg
      901 catttgctga agcaaggaga agcatggtag tagatgatga ctccccagag atgtataaaa
      961 cagtctctca agaatctctt acacctggaa aactagaaat taattttgaa gaattattaa
     1021 aacaaaaaat ggaagaagaa agacgacgaa cagaggagga acggaagcat aagctagaga
     1081 tggaaaaaca ggaatttgaa caactgagac aagaaatggg agaggaagaa gaagaaaatg
     1141 aaacctttga actgagcagg gaatatgaag aattaatcaa attgaaaagg agtggctcta
     1201 ttcaagctaa aaatctaaaa agcaagtttg aaaaaattgg acaattgtct gaaaaacaaa
     1261 tacagaaaaa gatagaagaa gaacgagcaa gaagaagagc aattgatctt gaaattaaag
     1321 agcgagaagc agaaaacttt catgaggaag aagatgttga tatcaagcct gcaaaaaaaa
     1381 gtgaggctcc atttactcat aaagtgaata tgaaagctag atttgaacga atggctaagg
     1441 caagagaaga agaagaacaa agaagaattg aagagcaaaa gttattacgc atgcagtttg
     1501 aacaaaagga aattgatgca gcactacaaa agaaaagaga agaggaggaa gaagaagatt
     1561 gtagcaacat gaatggctcc accattgaag atgaagcgca aaccagatca ggagctccgt
     1621 ggtttaagaa gcctctaaaa aacacatcgg ttgtagacag tgagccagtt agatttactg
     1681 ttaaagtaac aggagaaccc aaaccagaaa ttacatggtg gtttgaagga gaaatattgc
     1741 aggatggaga agactatcaa tatattgaaa gaggagaaac ttactgtctt tatttaccag
     1801 aaactttccc agaagatgaa ggagagtata tgtgtaaagc agtgaacaat aaaggctctg
     1861 cagctagtac ctgtattctt accattgaaa ctgacgacta ctaggtcccc ttccctctcc
     1921 ctggaacaca caccctctct ctccgacttt cttactgcat ccatcctttc tgtggcgggg
     1981 ccagaaaagg aaactggaag tgccactacg ctgactcttc attcctttcc ccaactgtct
     2041 tcacaacaca agctcgtctg aaaagtacct ccttcctttt caaatgagca ccagattcac
     2101 attacgcagt atacgttggt gtgtaattta ataaggccaa gtgggaaatt tactcaatta
     2161 tttctatcag aacccataca aaggctgcgt atttcccatg tttacagcag tgatgtttaa
     2221 aaaaatcata aatcggacat attttgcatg aaagaataac acttatgagc tattcacacc
     2281 taaaattagt ctgaaatagc tgagttaagg aatttggaac ctatcaattt gagtgggctt
     2341 ttttcctcag tagttttatc attttgattg ttgtagtttc agaatctttc tgaagcagag
     2401 atataagggg gtaggggtgt catttctccc tctgggtgga gaaaacaaaa aaactaaaga
     2461 cttttaagaa acaactgcca gagcaaatct gatggaaacc actgcctaat acagagttct
     2521 gagtgttgag aatatcaaac gtacttttca aatgtgtgtg atatatattc aagcttctaa
     2581 aagcaaattt atgttgtgac cttgcctgaa caaattatat tttaatgaga aaactttgta
     2641 ttaacagttc atgcaggaga aaacaatttc aacataatca aagatttcaa gatctagaat
     2701 tagatttagg gaaaaatggc acaatcttca attttgagtt tttaaagtga gtttgtaaat
     2761 aattagcaac catgtactaa tcaagttgtt ttatatttta attgtctgga agacaatttt
     2821 attttacaat gtaaacccat aataaagtca cttctgtact taaaaaaaag tctttcagta
     2881 ttttagaaaa gagacgaaca ttcccttata atattcacca atgtacattt atttttttat
     2941 tgaggaaacc ataatcaata caaaattaca gcaatcatgt acccttttac atacaatggt
     3001 attaaagcaa actctaaacc acagtttgta aagtattcaa tttacctcaa gtccaagctg
     3061 catctcccta agacactgtt cccatcacag tagccatttt aagccaatct tctttttaca
     3121 cgggtagttt ctgtagagaa cacttttctc aggacgaaaa tgcattgagc atgcataaga
     3181 aaaaatatat atatatgtgc aaatacattt aagagtttct ataggggtat cactgaagaa
     3241 aataaaatcc tgggacttat ttgatttctt acaagcacca atttaaaaaa atccctcaaa
     3301 agtttactgt ggcaagaaaa ctcaagtgac taaacaaaaa ataaggttat tttcagagtc
     3361 aaaattatct ttaactaggt attgttaaaa tacattttaa agtgaggcag aattttcaga
     3421 aaataaagac atcttcatta attagtaatt tctacaacct tattctagac aacattaact
     3481 ttgcaggcag aagtggttct cctggcagag tattcaaaca aatgttatca ctttgaatac
     3541 atttctattt ccctcttaag gtactctgtt cactcctatc caaacccact cctgtaatta
     3601 actactaagg tatctgtcta aggatgtatt ttacaatgct cataaacaac tagtattaaa
     3661 ccactagttt tagtattaaa accattttca ttaattaaaa atgaaagtat acttcccatt
     3721 tctaaaagaa acatcaaacc ataagaattc taagtactac cacactaaga aatcttaaaa
     3781 acaaaaacac attgtcaagt ttaagtgcta aataaaataa atcaatttca agctaaacat
     3841 tctttctacc actcctaaca tccattgcat tcaaatcaac tggctcacct tttctgcttt
     3901 ccatttattt caaggttaag attagcgcca tttaaaaaat gcttgcagta tcagtgaagg
     3961 cttatgataa tgaataaaaa aaattctcat gagatagaaa caatgcccca atatctatta
     4021 gcattcatat gtattttgtt ttataaaaat gcaaactaca actaaccaaa acttgacagg
     4081 ctcttaaggt tcaaagagct ccttaatatc aatcttaaca tacctatcat tgactattaa
     4141 aacacacata cacacacata aatgtggtgc aataactaca taactttcaa aatttaacag
     4201 ttcatggaac atttaagatc aagtgaatag cactttaaaa tgaaaagtga tcaaagcagg
     4261 tacattacac cctataccat atattatgta tgggaaaaca tttcattttt ctcaattatg
     4321 atttgccaat tttaccttct acattgagcc cttctatggt ccatgctcat cggctcacca
     4381 atggcataca ctcaaaggat tcctcttatg ggtaactatc tcaggacctg attttatgag
     4441 ctatgatttg gtgcttgcag catcttcagc actgtgtgtg aaaatgaagg cagtattttt
     4501 gaatattttt ctttgttgca aagataagca ggagttttaa aaggatcagc acattttaga
     4561 aatcgaataa acaaaactga tatgatgctg ctttaataca ttcatcttaa ctcaaaatat
     4621 gtaccagtta aaatcatcta taagaacaca caaacatttt aaactggcaa aaaataaaat
     4681 gcagcgtcag ttattaaaga attataaacc agaaaaatat tggttgctat acagattatg
     4741 aaaggttatt tgctatacag ttaacatttc actgatgcac atgcctttac caaaacatac
     4801 tgccagtatt tcttagaatt tttttccttt ttcagtgtat ataaaaaagt tatgaaaact
     4861 gaattgtcta aaaaaaagtc ataatgaaat tcttgaccca taatgtcctt actgagttac
     4921 tacagttcaa gaataagaaa aaaaataaag actccatagc tttggagggc aaagaaaatg
     4981 tcttgtcaat cataaacaga ttgtgaaggc tgttgaagtg tctgaccaaa tgatttccta
     5041 aatcctgaaa actatgtaac tgtccttttt aaaattttaa caattcttct atatttggga
     5101 aaagttcgga tgtagtttaa ttacagcagc aatctactca tcattttttc ccgttttaat
     5161 ttaaaaaatt aaaataaaaa acattaccca gaaatgtaaa cagttgtttg aacaacttaa
     5221 agactttcca ctgaaatggt agcataaata acaaaataca ctttggggaa gcagtagcag
     5281 attgcttttg aatacacaac cacaaaaacc tcacagggac aacattaatg tactgaaata
     5341 tttatttata tatgtcctta ggttgtgctt acctgttgct ttttgcagca gaacctaagg
     5401 tggaaggtct gggaaggcac tgtgaagtat aaataattgc actgtttgca attaataaag
     5461 attttaaacc ttaaatgaat caaaatcaac agcctccaat ttgtgagtta tgatattgaa
     5521 tccaactgaa ctatctcttc agtttaatta tttaatgtac cactttccta aaagttcatc
     5581 tataaaacag tatcatgcaa aatactgaaa ctgttcacat caatacccta ctcttaaaga
     5641 taacagataa ctccttaact attaaacttg aagctagaac tacatatcca tatctaaata
     5701 agggtaaggg aagtcactct aggttctata aaacagtcaa acaacatttc aaaacatcta
     5761 caatgaactg tactgctatt ttctacccta taagtaatct caacatttat gtccttgcac
     5821 atctttcttt atagtatatt cagaacagca aatggtgctc ccccaccaat gaaagaacta
     5881 gtatatatat ataggaaatg gtgttaaaac cactacattg cttaatattt gcaaactgaa
     5941 aaccactctg tctgatacat ttcaagtctt tcatattaat atataagata tgcatgtttt
     6001 acactgaaaa acaatatatt ttaggagcac caatgagtaa tactattcaa ctttgttaat
     6061 gatcagtttt ctttagctat agctaaagca tatcaaaaat acttacccat taagctcact
     6121 ttaaaaaaaa atacagacct atgaattatt ctatgttaaa ttaagaagca gttatggttt
     6181 tccaagatat aggcactgta ttccaacata atattcacac aaagtatggc atttgcatta
     6241 tgtggaacat tgacaaaaag atactgttgc agttcatcaa tttgtcattc tgatgtactt
     6301 acagtgcaat gctccttgaa ggaacacaat caaggatgat acacagcaca gtcctcctca
     6361 cccctacaga gctagttcta tactggctgg atcaaacctg cacttcaaca gacaatggca
     6421 agacagactg tatttgcatg tagtctaata tattaatatg caaagagcca acaaatatgc
     6481 aaagagtaaa acaatggatt tcaacaaaat atcagaactt cagcatgagt gttatagagt
     6541 aataaaatga ttttaagtac ataaaaaaat taagttgatt caatgattgg acttgtgcat
     6601 ttacaaaaca aagcttatct atactgcaaa aagaaaaaaa agaaaaaaaa agcttgaaca
     6661 ttttcatacc ccaataatgt ttcaatggca gatgcactgt ggctatactt tttgcacact
     6721 actacttttt ctaccctaaa tttagaaaga aacactctaa tatcgtatac atttgcaaga
     6781 gctgctttac atgaaaaaac tgttcttata gactactcat attcactatc cgaaaactga
     6841 aacagtcttg gaaatcaagt aattatcaaa ttaaaaacag aaaggttaac tgttatagca
     6901 gcagtacagg tctgaaacag tggtcatgta taaaaggaaa tttcactgtt aatgcaatgg
     6961 aagtatgcca aaagatcact gtacacacat gcagttttta atcaaacaga aggggaaaaa
     7021 aatgaagata tcaggattac ttgtgctgaa acagccaaat acaataaatg gaaaagatcc
     7081 tccaatctac tactatactg caagggggaa aaaaacatgc cagtgtttaa aaactcaaat
     7141 taatatttca tggggaaagc ttatatattt gtgtatatgt atcttaattt atcattgcta
     7201 agaaattatg aatcctttaa atacccacat atccaactta ccgacacagg aggtttcata
     7261 tcatttattg taaagcacaa aacaggcatt ttaaaagtga aagtatacat tgaaaaaagt
     7321 acatttatat cacaaagcat tgaccacata atagttgcaa atacatttgc tggaatgtgt
     7381 acatctacac taaatactaa aaacaaacca attttcattt ctacacagaa atattaacct
     7441 cctatcagta gtgatagata ttttgtacat tttcaaaaaa aaaaaaaaaa aaaaaagaaa
     7501 gaaagaaaga aagaaaaaa
//
LOCUS       XM_032611446            7570 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nexilin F-actin binding protein (NEXN),
            transcript variant X5, mRNA.
ACCESSION   XM_032611446
VERSION     XM_032611446.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7570
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7570
                     /gene="NEXN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743136"
     CDS             123..1955
                     /gene="NEXN"
                     /codon_start=1
                     /product="nexilin isoform X1"
                     /protein_id="XP_032467337.1"
                     /db_xref="GeneID:116743136"
                     /translation="MNDISQKAEIKEMLASDDEEEVSSKVEKAYVPKLTGTVKGKFAE
                     MEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQIEDINNTGTESASEEGD
                     DSLLVTVVPVKSHKTSGKMKKNFEDLEKEQEEKERVRYEEDIRYEEQRRSLKEAKCLS
                     LVMDDELESEAKKESLSPGKLKLTFEELERQRQENRRKQAEEEARKRLEEERRAFEEA
                     RRQMVNEEEENQDTENIFKGYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKK
                     AFAEARRSMVVDDDSPEMYKTVSQESLTPGKLEINFEELLKQKMEEERRRTEEERKHK
                     LEMEKQEFEQLRQEMGEEEEENETFELSREYEELIKLKRSGSIQAKNLKSKFEKIGQL
                     SEKQIQKKIEEERARRRAIDLEIKEREAENFHEEEDVDIKPAKKSEAPFTHKVNMKAR
                     FERMAKAREEEEQRRIEEQKLLRMQFEQKEIDAALQKKREEEEEEDCSNMNGSTIEDE
                     AQTRSGAPWFKKPLKNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIE
                     RGETYCLYLPETFPEDEGEYMCKAVNNKGSAASTCILTIETDDY"
     misc_feature    <258..1289
                     /gene="NEXN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1668..1937
                     /gene="NEXN"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1719..1733
                     /gene="NEXN"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1758..1772
                     /gene="NEXN"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1833..1847
                     /gene="NEXN"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1875..1892
                     /gene="NEXN"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1914..1925
                     /gene="NEXN"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gtgaaccaca ttattctccg ccagtccttt tacaggttaa agtgttgccc caagaaaact
       61 cagaatacac gtgaaaaaaa ttacaaagct tcataatcac cccaagaccg catagagcaa
      121 acatgaatga tatttctcaa aaggctgaga ttaaagaaat gcttgcttct gatgatgagg
      181 aagaggtatc ttctaaagta gaaaaggctt acgtcccaaa gctaacagga actgttaaag
      241 gtaaatttgc tgaaatggag aaacaaagac aagaggaaca aaggaagaga acagaagagg
      301 aacgaaaacg cagaattgag caggatatgt tagaaaagag gaagatacaa cgtgaattag
      361 caaaaagggc tgagcagatt gaggacataa acaatacggg aactgaatca gcatcagagg
      421 aaggagatga ttcactgctt gtaacagtgg tacctgtcaa atcacacaaa acatctggaa
      481 aaatgaaaaa gaatttcgaa gatctagaaa aagaacaaga agaaaaggaa agggtcaggt
      541 atgaagaaga tataagatat gaagaacaac gtcggtctct caaggaagca aagtgtcttt
      601 cattggtcat ggacgatgaa ctggaaagtg aggcaaagaa agagtcactt tctcctggaa
      661 aattgaaact gactttcgaa gaattggaaa gacaaagaca agaaaaccga aggaagcaag
      721 ctgaggagga agcaagaaaa cgtttagaag aagagaggcg tgcttttgaa gaagcaaggc
      781 ggcaaatggt aaatgaagag gaggaaaacc aagacacaga aaacattttt aaagggtacc
      841 gccctggtaa actcaaactc agttttgaag aaatagaaag acaaaggaga gaagatgaaa
      901 aaaggaaagc agaagaagaa gccagaagaa gaatagagga agaaaagaag gcatttgctg
      961 aagcaaggag aagcatggta gtagatgatg actccccaga gatgtataaa acagtctctc
     1021 aagaatctct tacacctgga aaactagaaa ttaattttga agaattatta aaacaaaaaa
     1081 tggaagaaga aagacgacga acagaggagg aacggaagca taagctagag atggaaaaac
     1141 aggaatttga acaactgaga caagaaatgg gagaggaaga agaagaaaat gaaacctttg
     1201 aactgagcag ggaatatgaa gaattaatca aattgaaaag gagtggctct attcaagcta
     1261 aaaatctaaa aagcaagttt gaaaaaattg gacaattgtc tgaaaaacaa atacagaaaa
     1321 agatagaaga agaacgagca agaagaagag caattgatct tgaaattaaa gagcgagaag
     1381 cagaaaactt tcatgaggaa gaagatgttg atatcaagcc tgcaaaaaaa agtgaggctc
     1441 catttactca taaagtgaat atgaaagcta gatttgaacg aatggctaag gcaagagaag
     1501 aagaagaaca aagaagaatt gaagagcaaa agttattacg catgcagttt gaacaaaagg
     1561 aaattgatgc agcactacaa aagaaaagag aagaggagga agaagaagat tgtagcaaca
     1621 tgaatggctc caccattgaa gatgaagcgc aaaccagatc aggagctccg tggtttaaga
     1681 agcctctaaa aaacacatcg gttgtagaca gtgagccagt tagatttact gttaaagtaa
     1741 caggagaacc caaaccagaa attacatggt ggtttgaagg agaaatattg caggatggag
     1801 aagactatca atatattgaa agaggagaaa cttactgtct ttatttacca gaaactttcc
     1861 cagaagatga aggagagtat atgtgtaaag cagtgaacaa taaaggctct gcagctagta
     1921 cctgtattct taccattgaa actgacgact actaggtccc cttccctctc cctggaacac
     1981 acaccctctc tctccgactt tcttactgca tccatccttt ctgtggcggg gccagaaaag
     2041 gaaactggaa gtgccactac gctgactctt cattcctttc cccaactgtc ttcacaacac
     2101 aagctcgtct gaaaagtacc tccttccttt tcaaatgagc accagattca cattacgcag
     2161 tatacgttgg tgtgtaattt aataaggcca agtgggaaat ttactcaatt atttctatca
     2221 gaacccatac aaaggctgcg tatttcccat gtttacagca gtgatgttta aaaaaatcat
     2281 aaatcggaca tattttgcat gaaagaataa cacttatgag ctattcacac ctaaaattag
     2341 tctgaaatag ctgagttaag gaatttggaa cctatcaatt tgagtgggct tttttcctca
     2401 gtagttttat cattttgatt gttgtagttt cagaatcttt ctgaagcaga gatataaggg
     2461 ggtaggggtg tcatttctcc ctctgggtgg agaaaacaaa aaaactaaag acttttaaga
     2521 aacaactgcc agagcaaatc tgatggaaac cactgcctaa tacagagttc tgagtgttga
     2581 gaatatcaaa cgtacttttc aaatgtgtgt gatatatatt caagcttcta aaagcaaatt
     2641 tatgttgtga ccttgcctga acaaattata ttttaatgag aaaactttgt attaacagtt
     2701 catgcaggag aaaacaattt caacataatc aaagatttca agatctagaa ttagatttag
     2761 ggaaaaatgg cacaatcttc aattttgagt ttttaaagtg agtttgtaaa taattagcaa
     2821 ccatgtacta atcaagttgt tttatatttt aattgtctgg aagacaattt tattttacaa
     2881 tgtaaaccca taataaagtc acttctgtac ttaaaaaaaa gtctttcagt attttagaaa
     2941 agagacgaac attcccttat aatattcacc aatgtacatt tattttttta ttgaggaaac
     3001 cataatcaat acaaaattac agcaatcatg taccctttta catacaatgg tattaaagca
     3061 aactctaaac cacagtttgt aaagtattca atttacctca agtccaagct gcatctccct
     3121 aagacactgt tcccatcaca gtagccattt taagccaatc ttctttttac acgggtagtt
     3181 tctgtagaga acacttttct caggacgaaa atgcattgag catgcataag aaaaaatata
     3241 tatatatgtg caaatacatt taagagtttc tataggggta tcactgaaga aaataaaatc
     3301 ctgggactta tttgatttct tacaagcacc aatttaaaaa aatccctcaa aagtttactg
     3361 tggcaagaaa actcaagtga ctaaacaaaa aataaggtta ttttcagagt caaaattatc
     3421 tttaactagg tattgttaaa atacatttta aagtgaggca gaattttcag aaaataaaga
     3481 catcttcatt aattagtaat ttctacaacc ttattctaga caacattaac tttgcaggca
     3541 gaagtggttc tcctggcaga gtattcaaac aaatgttatc actttgaata catttctatt
     3601 tccctcttaa ggtactctgt tcactcctat ccaaacccac tcctgtaatt aactactaag
     3661 gtatctgtct aaggatgtat tttacaatgc tcataaacaa ctagtattaa accactagtt
     3721 ttagtattaa aaccattttc attaattaaa aatgaaagta tacttcccat ttctaaaaga
     3781 aacatcaaac cataagaatt ctaagtacta ccacactaag aaatcttaaa aacaaaaaca
     3841 cattgtcaag tttaagtgct aaataaaata aatcaatttc aagctaaaca ttctttctac
     3901 cactcctaac atccattgca ttcaaatcaa ctggctcacc ttttctgctt tccatttatt
     3961 tcaaggttaa gattagcgcc atttaaaaaa tgcttgcagt atcagtgaag gcttatgata
     4021 atgaataaaa aaaattctca tgagatagaa acaatgcccc aatatctatt agcattcata
     4081 tgtattttgt tttataaaaa tgcaaactac aactaaccaa aacttgacag gctcttaagg
     4141 ttcaaagagc tccttaatat caatcttaac atacctatca ttgactatta aaacacacat
     4201 acacacacat aaatgtggtg caataactac ataactttca aaatttaaca gttcatggaa
     4261 catttaagat caagtgaata gcactttaaa atgaaaagtg atcaaagcag gtacattaca
     4321 ccctatacca tatattatgt atgggaaaac atttcatttt tctcaattat gatttgccaa
     4381 ttttaccttc tacattgagc ccttctatgg tccatgctca tcggctcacc aatggcatac
     4441 actcaaagga ttcctcttat gggtaactat ctcaggacct gattttatga gctatgattt
     4501 ggtgcttgca gcatcttcag cactgtgtgt gaaaatgaag gcagtatttt tgaatatttt
     4561 tctttgttgc aaagataagc aggagtttta aaaggatcag cacattttag aaatcgaata
     4621 aacaaaactg atatgatgct gctttaatac attcatctta actcaaaata tgtaccagtt
     4681 aaaatcatct ataagaacac acaaacattt taaactggca aaaaataaaa tgcagcgtca
     4741 gttattaaag aattataaac cagaaaaata ttggttgcta tacagattat gaaaggttat
     4801 ttgctataca gttaacattt cactgatgca catgccttta ccaaaacata ctgccagtat
     4861 ttcttagaat ttttttcctt tttcagtgta tataaaaaag ttatgaaaac tgaattgtct
     4921 aaaaaaaagt cataatgaaa ttcttgaccc ataatgtcct tactgagtta ctacagttca
     4981 agaataagaa aaaaaataaa gactccatag ctttggaggg caaagaaaat gtcttgtcaa
     5041 tcataaacag attgtgaagg ctgttgaagt gtctgaccaa atgatttcct aaatcctgaa
     5101 aactatgtaa ctgtcctttt taaaatttta acaattcttc tatatttggg aaaagttcgg
     5161 atgtagttta attacagcag caatctactc atcatttttt cccgttttaa tttaaaaaat
     5221 taaaataaaa aacattaccc agaaatgtaa acagttgttt gaacaactta aagactttcc
     5281 actgaaatgg tagcataaat aacaaaatac actttgggga agcagtagca gattgctttt
     5341 gaatacacaa ccacaaaaac ctcacaggga caacattaat gtactgaaat atttatttat
     5401 atatgtcctt aggttgtgct tacctgttgc tttttgcagc agaacctaag gtggaaggtc
     5461 tgggaaggca ctgtgaagta taaataattg cactgtttgc aattaataaa gattttaaac
     5521 cttaaatgaa tcaaaatcaa cagcctccaa tttgtgagtt atgatattga atccaactga
     5581 actatctctt cagtttaatt atttaatgta ccactttcct aaaagttcat ctataaaaca
     5641 gtatcatgca aaatactgaa actgttcaca tcaataccct actcttaaag ataacagata
     5701 actccttaac tattaaactt gaagctagaa ctacatatcc atatctaaat aagggtaagg
     5761 gaagtcactc taggttctat aaaacagtca aacaacattt caaaacatct acaatgaact
     5821 gtactgctat tttctaccct ataagtaatc tcaacattta tgtccttgca catctttctt
     5881 tatagtatat tcagaacagc aaatggtgct cccccaccaa tgaaagaact agtatatata
     5941 tataggaaat ggtgttaaaa ccactacatt gcttaatatt tgcaaactga aaaccactct
     6001 gtctgataca tttcaagtct ttcatattaa tatataagat atgcatgttt tacactgaaa
     6061 aacaatatat tttaggagca ccaatgagta atactattca actttgttaa tgatcagttt
     6121 tctttagcta tagctaaagc atatcaaaaa tacttaccca ttaagctcac tttaaaaaaa
     6181 aatacagacc tatgaattat tctatgttaa attaagaagc agttatggtt ttccaagata
     6241 taggcactgt attccaacat aatattcaca caaagtatgg catttgcatt atgtggaaca
     6301 ttgacaaaaa gatactgttg cagttcatca atttgtcatt ctgatgtact tacagtgcaa
     6361 tgctccttga aggaacacaa tcaaggatga tacacagcac agtcctcctc acccctacag
     6421 agctagttct atactggctg gatcaaacct gcacttcaac agacaatggc aagacagact
     6481 gtatttgcat gtagtctaat atattaatat gcaaagagcc aacaaatatg caaagagtaa
     6541 aacaatggat ttcaacaaaa tatcagaact tcagcatgag tgttatagag taataaaatg
     6601 attttaagta cataaaaaaa ttaagttgat tcaatgattg gacttgtgca tttacaaaac
     6661 aaagcttatc tatactgcaa aaagaaaaaa aagaaaaaaa aagcttgaac attttcatac
     6721 cccaataatg tttcaatggc agatgcactg tggctatact ttttgcacac tactactttt
     6781 tctaccctaa atttagaaag aaacactcta atatcgtata catttgcaag agctgcttta
     6841 catgaaaaaa ctgttcttat agactactca tattcactat ccgaaaactg aaacagtctt
     6901 ggaaatcaag taattatcaa attaaaaaca gaaaggttaa ctgttatagc agcagtacag
     6961 gtctgaaaca gtggtcatgt ataaaaggaa atttcactgt taatgcaatg gaagtatgcc
     7021 aaaagatcac tgtacacaca tgcagttttt aatcaaacag aaggggaaaa aaatgaagat
     7081 atcaggatta cttgtgctga aacagccaaa tacaataaat ggaaaagatc ctccaatcta
     7141 ctactatact gcaaggggga aaaaaacatg ccagtgttta aaaactcaaa ttaatatttc
     7201 atggggaaag cttatatatt tgtgtatatg tatcttaatt tatcattgct aagaaattat
     7261 gaatccttta aatacccaca tatccaactt accgacacag gaggtttcat atcatttatt
     7321 gtaaagcaca aaacaggcat tttaaaagtg aaagtataca ttgaaaaaag tacatttata
     7381 tcacaaagca ttgaccacat aatagttgca aatacatttg ctggaatgtg tacatctaca
     7441 ctaaatacta aaaacaaacc aattttcatt tctacacaga aatattaacc tcctatcagt
     7501 agtgatagat attttgtaca ttttcaaaaa aaaaaaaaaa aaaaaaagaa agaaagaaag
     7561 aaagaaaaaa
//
LOCUS       XM_032611454            2143 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nexilin F-actin binding protein (NEXN),
            transcript variant X6, mRNA.
ACCESSION   XM_032611454
VERSION     XM_032611454.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2143
                     /gene="NEXN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 25 long SRA reads, 5
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116743136"
     CDS             135..1964
                     /gene="NEXN"
                     /codon_start=1
                     /product="nexilin isoform X2"
                     /protein_id="XP_032467345.1"
                     /db_xref="GeneID:116743136"
                     /translation="MNDISQKAEIKEMLASDDEEEVSSKVEKAYVPKLTGTVKGKFAE
                     MEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQIEDINNTGTESASEEGD
                     DSLLVTVVPVKSHKTSGKMKKNFEDLEKEQEEKERVRYEEDIRYEEQRRSLKEAKCLS
                     LVMDDELESEAKKESLSPGKLKLTFEELERQRQENRRKQAEEEARKRLEEERRAFEEA
                     RRQMVNEEEENQDTENIFKGYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKK
                     AFAEARRSMVVDDDSPEMYKTVSQESLTPGKLEINFEELLKQKMEEERRRTEEERKHK
                     LEMEKQEFEQLRQEMGEEEEENETFELSREYEELIKLKRSGSIQAKNLKSKFEKIGQL
                     SEKQIQKKIEEERARRRAIDLEIKEREAENFHEEEDVDIKPAKKSEAPFTHKVNMKAR
                     FERMAKAREEEEQRRIEEQKLLRMQFEQKEIDAALQKKREEEEEEDCSNMNGSTIEDE
                     AQTRSGAPWFKKPLKNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIE
                     RGETYCLYLPETFPEDEGEYMCKAVNNKGSAASTCILTIESKN"
     misc_feature    <270..1301
                     /gene="NEXN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1680..1949
                     /gene="NEXN"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1731..1745
                     /gene="NEXN"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1770..1784
                     /gene="NEXN"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1845..1859
                     /gene="NEXN"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1887..1904
                     /gene="NEXN"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1926..1937
                     /gene="NEXN"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 acctgtcatt gagtgaacca cattattctc cgccagtcct tttacaggtt aaagtgttgc
       61 cccaagaaaa ctcagaatac acgtgaaaaa aattacaaag cttcataatc accccaagac
      121 cgcatagagc aaacatgaat gatatttctc aaaaggctga gattaaagaa atgcttgctt
      181 ctgatgatga ggaagaggta tcttctaaag tagaaaaggc ttacgtccca aagctaacag
      241 gaactgttaa aggtaaattt gctgaaatgg agaaacaaag acaagaggaa caaaggaaga
      301 gaacagaaga ggaacgaaaa cgcagaattg agcaggatat gttagaaaag aggaagatac
      361 aacgtgaatt agcaaaaagg gctgagcaga ttgaggacat aaacaatacg ggaactgaat
      421 cagcatcaga ggaaggagat gattcactgc ttgtaacagt ggtacctgtc aaatcacaca
      481 aaacatctgg aaaaatgaaa aagaatttcg aagatctaga aaaagaacaa gaagaaaagg
      541 aaagggtcag gtatgaagaa gatataagat atgaagaaca acgtcggtct ctcaaggaag
      601 caaagtgtct ttcattggtc atggacgatg aactggaaag tgaggcaaag aaagagtcac
      661 tttctcctgg aaaattgaaa ctgactttcg aagaattgga aagacaaaga caagaaaacc
      721 gaaggaagca agctgaggag gaagcaagaa aacgtttaga agaagagagg cgtgcttttg
      781 aagaagcaag gcggcaaatg gtaaatgaag aggaggaaaa ccaagacaca gaaaacattt
      841 ttaaagggta ccgccctggt aaactcaaac tcagttttga agaaatagaa agacaaagga
      901 gagaagatga aaaaaggaaa gcagaagaag aagccagaag aagaatagag gaagaaaaga
      961 aggcatttgc tgaagcaagg agaagcatgg tagtagatga tgactcccca gagatgtata
     1021 aaacagtctc tcaagaatct cttacacctg gaaaactaga aattaatttt gaagaattat
     1081 taaaacaaaa aatggaagaa gaaagacgac gaacagagga ggaacggaag cataagctag
     1141 agatggaaaa acaggaattt gaacaactga gacaagaaat gggagaggaa gaagaagaaa
     1201 atgaaacctt tgaactgagc agggaatatg aagaattaat caaattgaaa aggagtggct
     1261 ctattcaagc taaaaatcta aaaagcaagt ttgaaaaaat tggacaattg tctgaaaaac
     1321 aaatacagaa aaagatagaa gaagaacgag caagaagaag agcaattgat cttgaaatta
     1381 aagagcgaga agcagaaaac tttcatgagg aagaagatgt tgatatcaag cctgcaaaaa
     1441 aaagtgaggc tccatttact cataaagtga atatgaaagc tagatttgaa cgaatggcta
     1501 aggcaagaga agaagaagaa caaagaagaa ttgaagagca aaagttatta cgcatgcagt
     1561 ttgaacaaaa ggaaattgat gcagcactac aaaagaaaag agaagaggag gaagaagaag
     1621 attgtagcaa catgaatggc tccaccattg aagatgaagc gcaaaccaga tcaggagctc
     1681 cgtggtttaa gaagcctcta aaaaacacat cggttgtaga cagtgagcca gttagattta
     1741 ctgttaaagt aacaggagaa cccaaaccag aaattacatg gtggtttgaa ggagaaatat
     1801 tgcaggatgg agaagactat caatatattg aaagaggaga aacttactgt ctttatttac
     1861 cagaaacttt cccagaagat gaaggagagt atatgtgtaa agcagtgaac aataaaggct
     1921 ctgcagctag tacctgtatt cttaccattg aaagtaagaa ttaatcactc tttgaatcta
     1981 gaacttttat tctattttaa aatgttttcc tttaaaaaaa aaaaaatcac ttttcttctc
     2041 tcttttttag ctgacgacta ctaggtcccc ttccctctcc ctggaacaca caccctctct
     2101 ctccgacttt cttactgcat ccatcctttc tgtggcgggg cca
//
LOCUS       XM_032611463            7682 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nexilin F-actin binding protein (NEXN),
            transcript variant X7, mRNA.
ACCESSION   XM_032611463
VERSION     XM_032611463.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7682
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7682
                     /gene="NEXN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743136"
     CDS             277..2067
                     /gene="NEXN"
                     /codon_start=1
                     /product="nexilin isoform X3"
                     /protein_id="XP_032467354.1"
                     /db_xref="GeneID:116743136"
                     /translation="MNDISQKAEIKEMLASDDEEEVSSKVEKAYVPKLTGTVKGKFAE
                     MEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQEGDDSLLVTVVPVKSHK
                     TSGKMKKNFEDLEKEQEEKERVRYEEDIRYEEQRRSLKEAKCLSLVMDDELESEAKKE
                     SLSPGKLKLTFEELERQRQENRRKQAEEEARKRLEEERRAFEEARRQMVNEEEENQDT
                     ENIFKGYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKKAFAEARRSMVVDDD
                     SPEMYKTVSQESLTPGKLEINFEELLKQKMEEERRRTEEERKHKLEMEKQEFEQLRQE
                     MGEEEEENETFELSREYEELIKLKRSGSIQAKNLKSKFEKIGQLSEKQIQKKIEEERA
                     RRRAIDLEIKEREAENFHEEEDVDIKPAKKSEAPFTHKVNMKARFERMAKAREEEEQR
                     RIEEQKLLRMQFEQKEIDAALQKKREEEEEEDCSNMNGSTIEDEAQTRSGAPWFKKPL
                     KNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIERGETYCLYLPETFP
                     EDEGEYMCKAVNNKGSAASTCILTIETDDY"
     misc_feature    <280..1680
                     /gene="NEXN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1780..2049
                     /gene="NEXN"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1831..1845
                     /gene="NEXN"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1870..1884
                     /gene="NEXN"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1945..1959
                     /gene="NEXN"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1987..2004
                     /gene="NEXN"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2026..2037
                     /gene="NEXN"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gtgttttgga acagctgcag ccggcgttgg gcccgcctgg aatgcgggaa caggctgcac
       61 accaggactt ttatggaaac ttgctgctgg agccggcggc ggccagaggg ctcgtagcgg
      121 ctggagcggc ggcggccgga gcgccaggac ccctgaccac accccggcgc ccagagcctg
      181 ccagcgcgca ccccggacct tcgcgtgtcg ccggctcgag gcgggtgaaa aaaattacaa
      241 agcttcataa tcaccccaag accgcataga gcaaacatga atgatatttc tcaaaaggct
      301 gagattaaag aaatgcttgc ttctgatgat gaggaagagg tatcttctaa agtagaaaag
      361 gcttacgtcc caaagctaac aggaactgtt aaaggtaaat ttgctgaaat ggagaaacaa
      421 agacaagagg aacaaaggaa gagaacagaa gaggaacgaa aacgcagaat tgagcaggat
      481 atgttagaaa agaggaagat acaacgtgaa ttagcaaaaa gggctgagca ggaaggagat
      541 gattcactgc ttgtaacagt ggtacctgtc aaatcacaca aaacatctgg aaaaatgaaa
      601 aagaatttcg aagatctaga aaaagaacaa gaagaaaagg aaagggtcag gtatgaagaa
      661 gatataagat atgaagaaca acgtcggtct ctcaaggaag caaagtgtct ttcattggtc
      721 atggacgatg aactggaaag tgaggcaaag aaagagtcac tttctcctgg aaaattgaaa
      781 ctgactttcg aagaattgga aagacaaaga caagaaaacc gaaggaagca agctgaggag
      841 gaagcaagaa aacgtttaga agaagagagg cgtgcttttg aagaagcaag gcggcaaatg
      901 gtaaatgaag aggaggaaaa ccaagacaca gaaaacattt ttaaagggta ccgccctggt
      961 aaactcaaac tcagttttga agaaatagaa agacaaagga gagaagatga aaaaaggaaa
     1021 gcagaagaag aagccagaag aagaatagag gaagaaaaga aggcatttgc tgaagcaagg
     1081 agaagcatgg tagtagatga tgactcccca gagatgtata aaacagtctc tcaagaatct
     1141 cttacacctg gaaaactaga aattaatttt gaagaattat taaaacaaaa aatggaagaa
     1201 gaaagacgac gaacagagga ggaacggaag cataagctag agatggaaaa acaggaattt
     1261 gaacaactga gacaagaaat gggagaggaa gaagaagaaa atgaaacctt tgaactgagc
     1321 agggaatatg aagaattaat caaattgaaa aggagtggct ctattcaagc taaaaatcta
     1381 aaaagcaagt ttgaaaaaat tggacaattg tctgaaaaac aaatacagaa aaagatagaa
     1441 gaagaacgag caagaagaag agcaattgat cttgaaatta aagagcgaga agcagaaaac
     1501 tttcatgagg aagaagatgt tgatatcaag cctgcaaaaa aaagtgaggc tccatttact
     1561 cataaagtga atatgaaagc tagatttgaa cgaatggcta aggcaagaga agaagaagaa
     1621 caaagaagaa ttgaagagca aaagttatta cgcatgcagt ttgaacaaaa ggaaattgat
     1681 gcagcactac aaaagaaaag agaagaggag gaagaagaag attgtagcaa catgaatggc
     1741 tccaccattg aagatgaagc gcaaaccaga tcaggagctc cgtggtttaa gaagcctcta
     1801 aaaaacacat cggttgtaga cagtgagcca gttagattta ctgttaaagt aacaggagaa
     1861 cccaaaccag aaattacatg gtggtttgaa ggagaaatat tgcaggatgg agaagactat
     1921 caatatattg aaagaggaga aacttactgt ctttatttac cagaaacttt cccagaagat
     1981 gaaggagagt atatgtgtaa agcagtgaac aataaaggct ctgcagctag tacctgtatt
     2041 cttaccattg aaactgacga ctactaggtc cccttccctc tccctggaac acacaccctc
     2101 tctctccgac tttcttactg catccatcct ttctgtggcg gggccagaaa aggaaactgg
     2161 aagtgccact acgctgactc ttcattcctt tccccaactg tcttcacaac acaagctcgt
     2221 ctgaaaagta cctccttcct tttcaaatga gcaccagatt cacattacgc agtatacgtt
     2281 ggtgtgtaat ttaataaggc caagtgggaa atttactcaa ttatttctat cagaacccat
     2341 acaaaggctg cgtatttccc atgtttacag cagtgatgtt taaaaaaatc ataaatcgga
     2401 catattttgc atgaaagaat aacacttatg agctattcac acctaaaatt agtctgaaat
     2461 agctgagtta aggaatttgg aacctatcaa tttgagtggg cttttttcct cagtagtttt
     2521 atcattttga ttgttgtagt ttcagaatct ttctgaagca gagatataag ggggtagggg
     2581 tgtcatttct ccctctgggt ggagaaaaca aaaaaactaa agacttttaa gaaacaactg
     2641 ccagagcaaa tctgatggaa accactgcct aatacagagt tctgagtgtt gagaatatca
     2701 aacgtacttt tcaaatgtgt gtgatatata ttcaagcttc taaaagcaaa tttatgttgt
     2761 gaccttgcct gaacaaatta tattttaatg agaaaacttt gtattaacag ttcatgcagg
     2821 agaaaacaat ttcaacataa tcaaagattt caagatctag aattagattt agggaaaaat
     2881 ggcacaatct tcaattttga gtttttaaag tgagtttgta aataattagc aaccatgtac
     2941 taatcaagtt gttttatatt ttaattgtct ggaagacaat tttattttac aatgtaaacc
     3001 cataataaag tcacttctgt acttaaaaaa aagtctttca gtattttaga aaagagacga
     3061 acattccctt ataatattca ccaatgtaca tttatttttt tattgaggaa accataatca
     3121 atacaaaatt acagcaatca tgtacccttt tacatacaat ggtattaaag caaactctaa
     3181 accacagttt gtaaagtatt caatttacct caagtccaag ctgcatctcc ctaagacact
     3241 gttcccatca cagtagccat tttaagccaa tcttcttttt acacgggtag tttctgtaga
     3301 gaacactttt ctcaggacga aaatgcattg agcatgcata agaaaaaata tatatatatg
     3361 tgcaaataca tttaagagtt tctatagggg tatcactgaa gaaaataaaa tcctgggact
     3421 tatttgattt cttacaagca ccaatttaaa aaaatccctc aaaagtttac tgtggcaaga
     3481 aaactcaagt gactaaacaa aaaataaggt tattttcaga gtcaaaatta tctttaacta
     3541 ggtattgtta aaatacattt taaagtgagg cagaattttc agaaaataaa gacatcttca
     3601 ttaattagta atttctacaa ccttattcta gacaacatta actttgcagg cagaagtggt
     3661 tctcctggca gagtattcaa acaaatgtta tcactttgaa tacatttcta tttccctctt
     3721 aaggtactct gttcactcct atccaaaccc actcctgtaa ttaactacta aggtatctgt
     3781 ctaaggatgt attttacaat gctcataaac aactagtatt aaaccactag ttttagtatt
     3841 aaaaccattt tcattaatta aaaatgaaag tatacttccc atttctaaaa gaaacatcaa
     3901 accataagaa ttctaagtac taccacacta agaaatctta aaaacaaaaa cacattgtca
     3961 agtttaagtg ctaaataaaa taaatcaatt tcaagctaaa cattctttct accactccta
     4021 acatccattg cattcaaatc aactggctca ccttttctgc tttccattta tttcaaggtt
     4081 aagattagcg ccatttaaaa aatgcttgca gtatcagtga aggcttatga taatgaataa
     4141 aaaaaattct catgagatag aaacaatgcc ccaatatcta ttagcattca tatgtatttt
     4201 gttttataaa aatgcaaact acaactaacc aaaacttgac aggctcttaa ggttcaaaga
     4261 gctccttaat atcaatctta acatacctat cattgactat taaaacacac atacacacac
     4321 ataaatgtgg tgcaataact acataacttt caaaatttaa cagttcatgg aacatttaag
     4381 atcaagtgaa tagcacttta aaatgaaaag tgatcaaagc aggtacatta caccctatac
     4441 catatattat gtatgggaaa acatttcatt tttctcaatt atgatttgcc aattttacct
     4501 tctacattga gcccttctat ggtccatgct catcggctca ccaatggcat acactcaaag
     4561 gattcctctt atgggtaact atctcaggac ctgattttat gagctatgat ttggtgcttg
     4621 cagcatcttc agcactgtgt gtgaaaatga aggcagtatt tttgaatatt tttctttgtt
     4681 gcaaagataa gcaggagttt taaaaggatc agcacatttt agaaatcgaa taaacaaaac
     4741 tgatatgatg ctgctttaat acattcatct taactcaaaa tatgtaccag ttaaaatcat
     4801 ctataagaac acacaaacat tttaaactgg caaaaaataa aatgcagcgt cagttattaa
     4861 agaattataa accagaaaaa tattggttgc tatacagatt atgaaaggtt atttgctata
     4921 cagttaacat ttcactgatg cacatgcctt taccaaaaca tactgccagt atttcttaga
     4981 atttttttcc tttttcagtg tatataaaaa agttatgaaa actgaattgt ctaaaaaaaa
     5041 gtcataatga aattcttgac ccataatgtc cttactgagt tactacagtt caagaataag
     5101 aaaaaaaata aagactccat agctttggag ggcaaagaaa atgtcttgtc aatcataaac
     5161 agattgtgaa ggctgttgaa gtgtctgacc aaatgatttc ctaaatcctg aaaactatgt
     5221 aactgtcctt tttaaaattt taacaattct tctatatttg ggaaaagttc ggatgtagtt
     5281 taattacagc agcaatctac tcatcatttt ttcccgtttt aatttaaaaa attaaaataa
     5341 aaaacattac ccagaaatgt aaacagttgt ttgaacaact taaagacttt ccactgaaat
     5401 ggtagcataa ataacaaaat acactttggg gaagcagtag cagattgctt ttgaatacac
     5461 aaccacaaaa acctcacagg gacaacatta atgtactgaa atatttattt atatatgtcc
     5521 ttaggttgtg cttacctgtt gctttttgca gcagaaccta aggtggaagg tctgggaagg
     5581 cactgtgaag tataaataat tgcactgttt gcaattaata aagattttaa accttaaatg
     5641 aatcaaaatc aacagcctcc aatttgtgag ttatgatatt gaatccaact gaactatctc
     5701 ttcagtttaa ttatttaatg taccactttc ctaaaagttc atctataaaa cagtatcatg
     5761 caaaatactg aaactgttca catcaatacc ctactcttaa agataacaga taactcctta
     5821 actattaaac ttgaagctag aactacatat ccatatctaa ataagggtaa gggaagtcac
     5881 tctaggttct ataaaacagt caaacaacat ttcaaaacat ctacaatgaa ctgtactgct
     5941 attttctacc ctataagtaa tctcaacatt tatgtccttg cacatctttc tttatagtat
     6001 attcagaaca gcaaatggtg ctcccccacc aatgaaagaa ctagtatata tatataggaa
     6061 atggtgttaa aaccactaca ttgcttaata tttgcaaact gaaaaccact ctgtctgata
     6121 catttcaagt ctttcatatt aatatataag atatgcatgt tttacactga aaaacaatat
     6181 attttaggag caccaatgag taatactatt caactttgtt aatgatcagt tttctttagc
     6241 tatagctaaa gcatatcaaa aatacttacc cattaagctc actttaaaaa aaaatacaga
     6301 cctatgaatt attctatgtt aaattaagaa gcagttatgg ttttccaaga tataggcact
     6361 gtattccaac ataatattca cacaaagtat ggcatttgca ttatgtggaa cattgacaaa
     6421 aagatactgt tgcagttcat caatttgtca ttctgatgta cttacagtgc aatgctcctt
     6481 gaaggaacac aatcaaggat gatacacagc acagtcctcc tcacccctac agagctagtt
     6541 ctatactggc tggatcaaac ctgcacttca acagacaatg gcaagacaga ctgtatttgc
     6601 atgtagtcta atatattaat atgcaaagag ccaacaaata tgcaaagagt aaaacaatgg
     6661 atttcaacaa aatatcagaa cttcagcatg agtgttatag agtaataaaa tgattttaag
     6721 tacataaaaa aattaagttg attcaatgat tggacttgtg catttacaaa acaaagctta
     6781 tctatactgc aaaaagaaaa aaaagaaaaa aaaagcttga acattttcat accccaataa
     6841 tgtttcaatg gcagatgcac tgtggctata ctttttgcac actactactt tttctaccct
     6901 aaatttagaa agaaacactc taatatcgta tacatttgca agagctgctt tacatgaaaa
     6961 aactgttctt atagactact catattcact atccgaaaac tgaaacagtc ttggaaatca
     7021 agtaattatc aaattaaaaa cagaaaggtt aactgttata gcagcagtac aggtctgaaa
     7081 cagtggtcat gtataaaagg aaatttcact gttaatgcaa tggaagtatg ccaaaagatc
     7141 actgtacaca catgcagttt ttaatcaaac agaaggggaa aaaaatgaag atatcaggat
     7201 tacttgtgct gaaacagcca aatacaataa atggaaaaga tcctccaatc tactactata
     7261 ctgcaagggg gaaaaaaaca tgccagtgtt taaaaactca aattaatatt tcatggggaa
     7321 agcttatata tttgtgtata tgtatcttaa tttatcattg ctaagaaatt atgaatcctt
     7381 taaataccca catatccaac ttaccgacac aggaggtttc atatcattta ttgtaaagca
     7441 caaaacaggc attttaaaag tgaaagtata cattgaaaaa agtacattta tatcacaaag
     7501 cattgaccac ataatagttg caaatacatt tgctggaatg tgtacatcta cactaaatac
     7561 taaaaacaaa ccaattttca tttctacaca gaaatattaa cctcctatca gtagtgatag
     7621 atattttgta cattttcaaa aaaaaaaaaa aaaaaaaaag aaagaaagaa agaaagaaaa
     7681 aa
//
LOCUS       XM_032611469            7560 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nexilin F-actin binding protein (NEXN),
            transcript variant X8, mRNA.
ACCESSION   XM_032611469
VERSION     XM_032611469.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7560
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7560
                     /gene="NEXN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743136"
     CDS             155..1945
                     /gene="NEXN"
                     /codon_start=1
                     /product="nexilin isoform X3"
                     /protein_id="XP_032467360.1"
                     /db_xref="GeneID:116743136"
                     /translation="MNDISQKAEIKEMLASDDEEEVSSKVEKAYVPKLTGTVKGKFAE
                     MEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQEGDDSLLVTVVPVKSHK
                     TSGKMKKNFEDLEKEQEEKERVRYEEDIRYEEQRRSLKEAKCLSLVMDDELESEAKKE
                     SLSPGKLKLTFEELERQRQENRRKQAEEEARKRLEEERRAFEEARRQMVNEEEENQDT
                     ENIFKGYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKKAFAEARRSMVVDDD
                     SPEMYKTVSQESLTPGKLEINFEELLKQKMEEERRRTEEERKHKLEMEKQEFEQLRQE
                     MGEEEEENETFELSREYEELIKLKRSGSIQAKNLKSKFEKIGQLSEKQIQKKIEEERA
                     RRRAIDLEIKEREAENFHEEEDVDIKPAKKSEAPFTHKVNMKARFERMAKAREEEEQR
                     RIEEQKLLRMQFEQKEIDAALQKKREEEEEEDCSNMNGSTIEDEAQTRSGAPWFKKPL
                     KNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIERGETYCLYLPETFP
                     EDEGEYMCKAVNNKGSAASTCILTIETDDY"
     misc_feature    <158..1558
                     /gene="NEXN"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1658..1927
                     /gene="NEXN"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:400151"
     misc_feature    1709..1723
                     /gene="NEXN"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1748..1762
                     /gene="NEXN"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1823..1837
                     /gene="NEXN"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1865..1882
                     /gene="NEXN"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1904..1915
                     /gene="NEXN"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 tgtctgtgca gtttcgggag ctttctcggt cctgcaggta gtgagcccta cggcggtgga
       61 gcgggtaccg gtcctcttgc tctgtcccag gggtcccagc aggtgaaaaa aattacaaag
      121 cttcataatc accccaagac cgcatagagc aaacatgaat gatatttctc aaaaggctga
      181 gattaaagaa atgcttgctt ctgatgatga ggaagaggta tcttctaaag tagaaaaggc
      241 ttacgtccca aagctaacag gaactgttaa aggtaaattt gctgaaatgg agaaacaaag
      301 acaagaggaa caaaggaaga gaacagaaga ggaacgaaaa cgcagaattg agcaggatat
      361 gttagaaaag aggaagatac aacgtgaatt agcaaaaagg gctgagcagg aaggagatga
      421 ttcactgctt gtaacagtgg tacctgtcaa atcacacaaa acatctggaa aaatgaaaaa
      481 gaatttcgaa gatctagaaa aagaacaaga agaaaaggaa agggtcaggt atgaagaaga
      541 tataagatat gaagaacaac gtcggtctct caaggaagca aagtgtcttt cattggtcat
      601 ggacgatgaa ctggaaagtg aggcaaagaa agagtcactt tctcctggaa aattgaaact
      661 gactttcgaa gaattggaaa gacaaagaca agaaaaccga aggaagcaag ctgaggagga
      721 agcaagaaaa cgtttagaag aagagaggcg tgcttttgaa gaagcaaggc ggcaaatggt
      781 aaatgaagag gaggaaaacc aagacacaga aaacattttt aaagggtacc gccctggtaa
      841 actcaaactc agttttgaag aaatagaaag acaaaggaga gaagatgaaa aaaggaaagc
      901 agaagaagaa gccagaagaa gaatagagga agaaaagaag gcatttgctg aagcaaggag
      961 aagcatggta gtagatgatg actccccaga gatgtataaa acagtctctc aagaatctct
     1021 tacacctgga aaactagaaa ttaattttga agaattatta aaacaaaaaa tggaagaaga
     1081 aagacgacga acagaggagg aacggaagca taagctagag atggaaaaac aggaatttga
     1141 acaactgaga caagaaatgg gagaggaaga agaagaaaat gaaacctttg aactgagcag
     1201 ggaatatgaa gaattaatca aattgaaaag gagtggctct attcaagcta aaaatctaaa
     1261 aagcaagttt gaaaaaattg gacaattgtc tgaaaaacaa atacagaaaa agatagaaga
     1321 agaacgagca agaagaagag caattgatct tgaaattaaa gagcgagaag cagaaaactt
     1381 tcatgaggaa gaagatgttg atatcaagcc tgcaaaaaaa agtgaggctc catttactca
     1441 taaagtgaat atgaaagcta gatttgaacg aatggctaag gcaagagaag aagaagaaca
     1501 aagaagaatt gaagagcaaa agttattacg catgcagttt gaacaaaagg aaattgatgc
     1561 agcactacaa aagaaaagag aagaggagga agaagaagat tgtagcaaca tgaatggctc
     1621 caccattgaa gatgaagcgc aaaccagatc aggagctccg tggtttaaga agcctctaaa
     1681 aaacacatcg gttgtagaca gtgagccagt tagatttact gttaaagtaa caggagaacc
     1741 caaaccagaa attacatggt ggtttgaagg agaaatattg caggatggag aagactatca
     1801 atatattgaa agaggagaaa cttactgtct ttatttacca gaaactttcc cagaagatga
     1861 aggagagtat atgtgtaaag cagtgaacaa taaaggctct gcagctagta cctgtattct
     1921 taccattgaa actgacgact actaggtccc cttccctctc cctggaacac acaccctctc
     1981 tctccgactt tcttactgca tccatccttt ctgtggcggg gccagaaaag gaaactggaa
     2041 gtgccactac gctgactctt cattcctttc cccaactgtc ttcacaacac aagctcgtct
     2101 gaaaagtacc tccttccttt tcaaatgagc accagattca cattacgcag tatacgttgg
     2161 tgtgtaattt aataaggcca agtgggaaat ttactcaatt atttctatca gaacccatac
     2221 aaaggctgcg tatttcccat gtttacagca gtgatgttta aaaaaatcat aaatcggaca
     2281 tattttgcat gaaagaataa cacttatgag ctattcacac ctaaaattag tctgaaatag
     2341 ctgagttaag gaatttggaa cctatcaatt tgagtgggct tttttcctca gtagttttat
     2401 cattttgatt gttgtagttt cagaatcttt ctgaagcaga gatataaggg ggtaggggtg
     2461 tcatttctcc ctctgggtgg agaaaacaaa aaaactaaag acttttaaga aacaactgcc
     2521 agagcaaatc tgatggaaac cactgcctaa tacagagttc tgagtgttga gaatatcaaa
     2581 cgtacttttc aaatgtgtgt gatatatatt caagcttcta aaagcaaatt tatgttgtga
     2641 ccttgcctga acaaattata ttttaatgag aaaactttgt attaacagtt catgcaggag
     2701 aaaacaattt caacataatc aaagatttca agatctagaa ttagatttag ggaaaaatgg
     2761 cacaatcttc aattttgagt ttttaaagtg agtttgtaaa taattagcaa ccatgtacta
     2821 atcaagttgt tttatatttt aattgtctgg aagacaattt tattttacaa tgtaaaccca
     2881 taataaagtc acttctgtac ttaaaaaaaa gtctttcagt attttagaaa agagacgaac
     2941 attcccttat aatattcacc aatgtacatt tattttttta ttgaggaaac cataatcaat
     3001 acaaaattac agcaatcatg taccctttta catacaatgg tattaaagca aactctaaac
     3061 cacagtttgt aaagtattca atttacctca agtccaagct gcatctccct aagacactgt
     3121 tcccatcaca gtagccattt taagccaatc ttctttttac acgggtagtt tctgtagaga
     3181 acacttttct caggacgaaa atgcattgag catgcataag aaaaaatata tatatatgtg
     3241 caaatacatt taagagtttc tataggggta tcactgaaga aaataaaatc ctgggactta
     3301 tttgatttct tacaagcacc aatttaaaaa aatccctcaa aagtttactg tggcaagaaa
     3361 actcaagtga ctaaacaaaa aataaggtta ttttcagagt caaaattatc tttaactagg
     3421 tattgttaaa atacatttta aagtgaggca gaattttcag aaaataaaga catcttcatt
     3481 aattagtaat ttctacaacc ttattctaga caacattaac tttgcaggca gaagtggttc
     3541 tcctggcaga gtattcaaac aaatgttatc actttgaata catttctatt tccctcttaa
     3601 ggtactctgt tcactcctat ccaaacccac tcctgtaatt aactactaag gtatctgtct
     3661 aaggatgtat tttacaatgc tcataaacaa ctagtattaa accactagtt ttagtattaa
     3721 aaccattttc attaattaaa aatgaaagta tacttcccat ttctaaaaga aacatcaaac
     3781 cataagaatt ctaagtacta ccacactaag aaatcttaaa aacaaaaaca cattgtcaag
     3841 tttaagtgct aaataaaata aatcaatttc aagctaaaca ttctttctac cactcctaac
     3901 atccattgca ttcaaatcaa ctggctcacc ttttctgctt tccatttatt tcaaggttaa
     3961 gattagcgcc atttaaaaaa tgcttgcagt atcagtgaag gcttatgata atgaataaaa
     4021 aaaattctca tgagatagaa acaatgcccc aatatctatt agcattcata tgtattttgt
     4081 tttataaaaa tgcaaactac aactaaccaa aacttgacag gctcttaagg ttcaaagagc
     4141 tccttaatat caatcttaac atacctatca ttgactatta aaacacacat acacacacat
     4201 aaatgtggtg caataactac ataactttca aaatttaaca gttcatggaa catttaagat
     4261 caagtgaata gcactttaaa atgaaaagtg atcaaagcag gtacattaca ccctatacca
     4321 tatattatgt atgggaaaac atttcatttt tctcaattat gatttgccaa ttttaccttc
     4381 tacattgagc ccttctatgg tccatgctca tcggctcacc aatggcatac actcaaagga
     4441 ttcctcttat gggtaactat ctcaggacct gattttatga gctatgattt ggtgcttgca
     4501 gcatcttcag cactgtgtgt gaaaatgaag gcagtatttt tgaatatttt tctttgttgc
     4561 aaagataagc aggagtttta aaaggatcag cacattttag aaatcgaata aacaaaactg
     4621 atatgatgct gctttaatac attcatctta actcaaaata tgtaccagtt aaaatcatct
     4681 ataagaacac acaaacattt taaactggca aaaaataaaa tgcagcgtca gttattaaag
     4741 aattataaac cagaaaaata ttggttgcta tacagattat gaaaggttat ttgctataca
     4801 gttaacattt cactgatgca catgccttta ccaaaacata ctgccagtat ttcttagaat
     4861 ttttttcctt tttcagtgta tataaaaaag ttatgaaaac tgaattgtct aaaaaaaagt
     4921 cataatgaaa ttcttgaccc ataatgtcct tactgagtta ctacagttca agaataagaa
     4981 aaaaaataaa gactccatag ctttggaggg caaagaaaat gtcttgtcaa tcataaacag
     5041 attgtgaagg ctgttgaagt gtctgaccaa atgatttcct aaatcctgaa aactatgtaa
     5101 ctgtcctttt taaaatttta acaattcttc tatatttggg aaaagttcgg atgtagttta
     5161 attacagcag caatctactc atcatttttt cccgttttaa tttaaaaaat taaaataaaa
     5221 aacattaccc agaaatgtaa acagttgttt gaacaactta aagactttcc actgaaatgg
     5281 tagcataaat aacaaaatac actttgggga agcagtagca gattgctttt gaatacacaa
     5341 ccacaaaaac ctcacaggga caacattaat gtactgaaat atttatttat atatgtcctt
     5401 aggttgtgct tacctgttgc tttttgcagc agaacctaag gtggaaggtc tgggaaggca
     5461 ctgtgaagta taaataattg cactgtttgc aattaataaa gattttaaac cttaaatgaa
     5521 tcaaaatcaa cagcctccaa tttgtgagtt atgatattga atccaactga actatctctt
     5581 cagtttaatt atttaatgta ccactttcct aaaagttcat ctataaaaca gtatcatgca
     5641 aaatactgaa actgttcaca tcaataccct actcttaaag ataacagata actccttaac
     5701 tattaaactt gaagctagaa ctacatatcc atatctaaat aagggtaagg gaagtcactc
     5761 taggttctat aaaacagtca aacaacattt caaaacatct acaatgaact gtactgctat
     5821 tttctaccct ataagtaatc tcaacattta tgtccttgca catctttctt tatagtatat
     5881 tcagaacagc aaatggtgct cccccaccaa tgaaagaact agtatatata tataggaaat
     5941 ggtgttaaaa ccactacatt gcttaatatt tgcaaactga aaaccactct gtctgataca
     6001 tttcaagtct ttcatattaa tatataagat atgcatgttt tacactgaaa aacaatatat
     6061 tttaggagca ccaatgagta atactattca actttgttaa tgatcagttt tctttagcta
     6121 tagctaaagc atatcaaaaa tacttaccca ttaagctcac tttaaaaaaa aatacagacc
     6181 tatgaattat tctatgttaa attaagaagc agttatggtt ttccaagata taggcactgt
     6241 attccaacat aatattcaca caaagtatgg catttgcatt atgtggaaca ttgacaaaaa
     6301 gatactgttg cagttcatca atttgtcatt ctgatgtact tacagtgcaa tgctccttga
     6361 aggaacacaa tcaaggatga tacacagcac agtcctcctc acccctacag agctagttct
     6421 atactggctg gatcaaacct gcacttcaac agacaatggc aagacagact gtatttgcat
     6481 gtagtctaat atattaatat gcaaagagcc aacaaatatg caaagagtaa aacaatggat
     6541 ttcaacaaaa tatcagaact tcagcatgag tgttatagag taataaaatg attttaagta
     6601 cataaaaaaa ttaagttgat tcaatgattg gacttgtgca tttacaaaac aaagcttatc
     6661 tatactgcaa aaagaaaaaa aagaaaaaaa aagcttgaac attttcatac cccaataatg
     6721 tttcaatggc agatgcactg tggctatact ttttgcacac tactactttt tctaccctaa
     6781 atttagaaag aaacactcta atatcgtata catttgcaag agctgcttta catgaaaaaa
     6841 ctgttcttat agactactca tattcactat ccgaaaactg aaacagtctt ggaaatcaag
     6901 taattatcaa attaaaaaca gaaaggttaa ctgttatagc agcagtacag gtctgaaaca
     6961 gtggtcatgt ataaaaggaa atttcactgt taatgcaatg gaagtatgcc aaaagatcac
     7021 tgtacacaca tgcagttttt aatcaaacag aaggggaaaa aaatgaagat atcaggatta
     7081 cttgtgctga aacagccaaa tacaataaat ggaaaagatc ctccaatcta ctactatact
     7141 gcaaggggga aaaaaacatg ccagtgttta aaaactcaaa ttaatatttc atggggaaag
     7201 cttatatatt tgtgtatatg tatcttaatt tatcattgct aagaaattat gaatccttta
     7261 aatacccaca tatccaactt accgacacag gaggtttcat atcatttatt gtaaagcaca
     7321 aaacaggcat tttaaaagtg aaagtataca ttgaaaaaag tacatttata tcacaaagca
     7381 ttgaccacat aatagttgca aatacatttg ctggaatgtg tacatctaca ctaaatacta
     7441 aaaacaaacc aattttcatt tctacacaga aatattaacc tcctatcagt agtgatagat
     7501 attttgtaca ttttcaaaaa aaaaaaaaaa aaaaaaagaa agaaagaaag aaagaaaaaa
//
LOCUS       XM_032611505            4601 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein transport protein Sec16B-like
            (LOC116743185), mRNA.
ACCESSION   XM_032611505
VERSION     XM_032611505.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4601
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4601
                     /gene="LOC116743185"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743185"
     CDS             169..3369
                     /gene="LOC116743185"
                     /codon_start=1
                     /product="protein transport protein Sec16B-like"
                     /protein_id="XP_032467396.1"
                     /db_xref="GeneID:116743185"
                     /translation="MKPWVPQWPPQPAGRPPSTSRDPDRGLQRDRYYRPIRHSWHNGE
                     RVQQEQDMGRSPQPQQDPGEDHQQPHYASRPGEWHPPVSRVDYYKGGYPSQLYSRPGI
                     EDLYQSYHSPALREEYAYGSYYYHGHPQQLREEGVPRQGSPYTWHEDYRDQKYLNEHQ
                     HENQNSPFGTNSETQFQSKRWNPYKDSPASNSGQERPGDLFVESPLTGAQKNKPSLTE
                     ESNLLRQHESGLTSSSYELSQYMTDASELYDPMAAAGWSPVQAEDISAAGPKTPMKFY
                     IPHVPVSFGPGGQLVCVGPRSLSDGQTALVELHSMEVILNDSEEQEKMRTFSGPLIRE
                     DVHKVDIVTFCQQKAAQSRKSETPGSRDSALLWQLLVLLCRQNGSVVGSDIAELLVQD
                     CKKLEKYKRQPPVANLINLTDEDWPVLSLGTRNLLTGEVPPSVETPAQIVEKFTKLLY
                     YGRKKEALEWAMKNHLWGHALFLASKMDPRTYSWVMSGFTSTLALNDPLQTLFQLMSG
                     RIPQAATCCGDEQWGDWRPHLAVILSNQGGDPELYQRTIVTMGDTLAGKGLVEAAHFC
                     YLMAHVPFGSYTVKTDHLALLGSSHSQEFLKFATTEAIQRTEIFEYCQMLGRPKSFIP
                     SFQVYKLLYASRLADYGLASQALHYCEAIGTALLSQGENSHPVLLVELIKLAERLKLS
                     DPLVLERHRRHRGDRDLEPDWLVHLRGHHKELQQKVAGDIGDPCSAHSDILGARKTTD
                     DTFYQDLSGHQGNSEALGDCSALWPTLEPMGPAQPSPQQPFPLQPSSYPAGGGSGQTG
                     VPVPLYSVPEAHLPGTGGSVAVTGTPGGRAWEEAQQMHPPPGENTVSPETFQQPDRQK
                     VVSKPQVPLIPRARNISESSTVSVKEDDGESSDEAEKKKSSENTAQRGKLGDAKENTK
                     GSGFGWLSWFRPKPAGDAPPSGDEDAPDSPDSEQEAPGASAPPGPSPGLSPTPPPAPQ
                     SLPDAGAFSRDTGGSEARGSASGAGRAEGTGNGGLLGPQGVSSGLYFNPGVLLPPPTL
                     KGAVPLYNPSQVPQLSMATSLNRPNRLAQRRYPTQQ"
     misc_feature    1147..2217
                     /gene="LOC116743185"
                     /note="Ancestral coatomer element 1 (ACE1) of COPII coat
                     complex assembly protein Sec16; Region: ACE1-Sec16-like;
                     cd09233"
                     /db_xref="CDD:187750"
     misc_feature    order(1486..1491,1495..1500,1504..1518,1522..1524,
                     1528..1530,1558..1560,1564..1566,1570..1575,1579..1584,
                     1594..1596,1612..1614,1633..1635,1660..1662,1675..1677,
                     1684..1686,1768..1773)
                     /gene="LOC116743185"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187750"
     misc_feature    order(1984..1986,2050..2055,2059..2064,2071..2076,
                     2083..2085,2164..2169,2176..2181,2188..2190,2200..2202)
                     /gene="LOC116743185"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187750"
     misc_feature    2449..>3213
                     /gene="LOC116743185"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
ORIGIN      
        1 gcactgtggc agattccaga aagggtcccc ctccgagaag ctgctgccct gccggtatct
       61 tatggcactg ctactttggc cttggagcat caggcccata cccagcccgg gaagataaaa
      121 taactacaca actgactcaa aacacgagag aaattcagaa ggtcagggat gaagccttgg
      181 gttccccagt ggccgcctca gccagcgggg aggcccccat caacatcaag ggatccagac
      241 cgagggcttc agagagatag atactatcgg cctattcgtc actcttggca caatggagag
      301 agggtccaac aagaacaaga catgggcagg agcccccaac cacagcagga ccctggggaa
      361 gaccaccagc agcctcacta cgcgtccagg cctggggaat ggcatccgcc tgtgtccagg
      421 gttgactatt ataaaggtgg ttatcccagt cagttgtatt caaggccggg cattgaggat
      481 ctctatcaaa gctatcactc tccagcccta agggaagaat atgcttatgg aagttattac
      541 taccatggac acccgcagca gctgcgggaa gaaggagtgc caaggcaagg gagtccttat
      601 acctggcatg aagattatcg agatcaaaag tacctgaatg aacaccaaca tgaaaaccag
      661 aatagtccgt ttggaacaaa tagtgagacc cagttccaat ctaagcgttg gaacccttat
      721 aaagacagtc ccgcttctaa ctctggacag gagaggcctg gggacttatt tgtggagagt
      781 ccgctaactg gggcccagaa aaacaagcca tcactgaccg aggaatccaa ccttctccgg
      841 cagcacgagt ctggtctcac ctccagcagc tatgagctca gtcagtacat gacagacgcc
      901 tctgagctgt acgaccccat ggctgcagcg ggttggagtc cagttcaggc tgaggacatc
      961 tcggcagctg gtcccaagac acccatgaag ttctacatcc ctcacgtgcc tgtgagtttt
     1021 gggccaggag gtcagctggt gtgtgtgggt cccagatctc tcagtgatgg acagacggcc
     1081 cttgttgaac tgcacagcat ggaggttatt cttaatgatt ctgaggaaca agaaaagatg
     1141 aggactttct caggacccct gattagggaa gatgtacaca aggtggacat cgtgacgttt
     1201 tgccagcaga aagcagcgca gagtcgcaaa tctgagacac cagggagcag agactcggct
     1261 ctactgtggc aactgttggt tctcctttgt cggcagaacg ggtccgtggt ggggtctgac
     1321 atcgcggagc tgctggtgca ggactgcaag aagctggaga agtacaagcg gcagccgcct
     1381 gtggccaacc tcatcaacct gacggatgag gactggccag tactgagctt agggacccgg
     1441 aacctgctca ctggggaggt tccccccagc gtggagacgc ctgcgcagat cgtggagaaa
     1501 ttcactaagt tgctctacta cggaaggaaa aaggaagcct tggagtgggc catgaagaac
     1561 catttgtggg gtcatgcttt gttccttgcc agcaagatgg acccaaggac ctacagctgg
     1621 gtcatgagtg gcttcaccag cacgctggcg ctcaacgacc cactgcagac cctcttccag
     1681 ctcatgtccg gaaggatccc acaggcagcc acgtgttgtg gggacgagca gtggggagac
     1741 tggagaccgc acttggctgt gattctgtcg aatcaaggtg gggacccgga gctgtatcag
     1801 cgcacgattg tcaccatggg ggacaccctg gctgggaagg ggctggtgga agcagctcac
     1861 ttctgctacc tcatggctca cgtgcccttc ggctcctata ccgtgaagac agaccacctg
     1921 gccttgctgg gcagtagcca cagtcaagag tttttgaaat ttgcaacaac tgaggctatc
     1981 cagaggacgg aaatcttcga gtactgtcag atgctgggcc gccccaaatc cttcatccct
     2041 tctttccagg tgtataagct cctttatgct tcccgtctgg cagattacgg ccttgcgtcc
     2101 caggccttgc attactgcga agccattggc acagccctct tgagccaggg agagaacagt
     2161 caccctgtgc tactagtgga actcatcaag cttgcagaga gactgaagct gtcagatcct
     2221 ctggttttag aacgccaccg ccgtcaccga ggagacaggg acctggagcc ggactggctg
     2281 gtacaccttc gggggcatca caaggagctg cagcaaaagg tagcaggaga cattggggat
     2341 ccttgctctg ctcactcgga tattttggga gccagaaaaa caacagacga cactttctac
     2401 caggatcttt ctggacatca aggcaactca gaagcccttg gggactgctc agccctgtgg
     2461 ccaacactgg agccgatggg cccggcccag cccagcccac agcagccctt tcccctccag
     2521 cccagctcct acccagcagg aggaggttcc gggcagacgg gggtcccggt gcctctttac
     2581 tcagttcctg aggcccatct gccagggacc ggtggcagtg tggcagtgac agggactcct
     2641 ggaggaaggg cctgggagga agcccagcag atgcacccgc cccccggaga gaacacagtg
     2701 tctccagaaa ccttccagca acctgacagg cagaaggttg tttccaaacc gcaggtgcca
     2761 ctgattccca gagcacgaaa tatttctgag agttccactg tatcagtcaa ggaggatgac
     2821 ggggagtcct ccgatgaggc agagaagaaa aagtcttccg aaaacaccgc ccagagagga
     2881 aagctcggag acgcgaagga gaatacaaag ggctcggggt ttggctggct cagctggttt
     2941 cgcccgaagc ccgccggcga cgcgcccccc tctggagatg aggacgcacc tgacagtcct
     3001 gactctgagc aggaagcccc cggagcatct gctcctcccg ggcccagccc gggcctctcc
     3061 ccgacgccgc ccccagctcc ccagtctctg ccggacgccg gcgccttctc cagggacaca
     3121 ggtggcagtg aagcccgagg atcagcgtcc ggggcaggga gagccgaggg cacggggaat
     3181 ggaggcttgt tgggacctca gggtgtttcc tctgggctct acttcaaccc tggtgttctg
     3241 cttcccccac ccaccttgaa aggggctgtc cctctctaca atccatccca ggtcccccag
     3301 ctctccatgg ctaccagcct gaaccggcca aatcgcctag ctcagcgccg ctatccaacc
     3361 cagcagtgac gagaaggacc actcatccca ggctggtctc cctgaagcac agcttttatg
     3421 ttgttctcgt ttcttaatcc cccagcccct ctgccacatc aggaccccca agagggttgt
     3481 gctagcctgt tgcctccatg gggcatagag aacgcaaggg gacagggtct cccaggacat
     3541 agctcagttc agtgttttaa gattagcttc agaatgatgg tgcagatggc ttcatcggat
     3601 ggaaaaactg ggcataacag cagactggag gtgagcagaa tgctgtggca gcagcactta
     3661 gaatgtggct tgagatcctc gggagattca gggcctaaga atcccactgc tggaatcagt
     3721 ggtgacacca ctgggctcag cagcaggaaa tgactggggg agaggcactc agggcagtat
     3781 tctagactaa cttgcacaga ctccggacac acaggctcag cggccatggc tcacgggccc
     3841 agccgctctg cagcatgtgg gatcttccca gaccggggca cgaacccgta tcccctgcat
     3901 cggcaggcgg actctcaacc gctgcgccac caggggagcc ctagactaac tttgacttct
     3961 tcctcagcct tagttacaga ccaattcatg gctgtagtta gcaaaagggt tttgaatctc
     4021 ggaaacttat cattgtttcc cgtcatcatt ccctcttggg tgacattttg gcagtttccc
     4081 tcttggtttt agttttgtgc acatttttta tgtggttcag attaattata tttctctcac
     4141 tttcttagct ggtcctattt ttccacattc tggcatctgg ctatcaagtt agattgctgt
     4201 aggcatcata ttgtcatggt aactactgaa cctaatgatg cagatggatg gaacatcagt
     4261 gtaataaagg atggaaaatg ttccctaaaa attcactcct tccataagag aggaggaatg
     4321 agtgcctgag tttgttaata cctcccttcc tcccttgggc ctttgcaaat ggatgttcgg
     4381 agggtcagag gagccggagg gaggaggggg acatcttgga aatttccatt tctcctttca
     4441 aacccacaat aggagtaact cttgctgttt gtcagatttg ttgaaaattg ttcctcacaa
     4501 agaacattct ttgtatgtgt aattgtacat acaggttttg tactttaacg taatatggtt
     4561 ctgatgttga tagcgattaa accagataat tttatagcag a
//
LOCUS       XM_032611527            2204 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus EF-hand calcium binding domain 7
            (EFCAB7), transcript variant X1, mRNA.
ACCESSION   XM_032611527
VERSION     XM_032611527.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2204
                     /gene="EFCAB7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 6
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743201"
     CDS             115..2004
                     /gene="EFCAB7"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 7 isoform X1"
                     /protein_id="XP_032467418.1"
                     /db_xref="GeneID:116743201"
                     /translation="MAISPGSDAAFSSQKSTLSESPRSKKFPLTEEEIFYMNCRAAYL
                     TVFKSSLDNIISKDQLCLALQHAGRNPSQKTITKYWTPQTAKLNFDDFCLILRKEKPT
                     SKAELLKSFKQLDVNDDGSILHTDLYKLLTKRGEKMTREEVNAIINLADVNADGKFDY
                     IKFCKLYMTTNEQCLKTTLEKLEVDSKLRRQQFGSHMEGSPERDPSPVPKPSPRIIRK
                     TDQESFSNKGDTRSSLLTTTREFRTSVSFTITMGANSNQNSKLTEPNSIKEWRCVQSK
                     GCFFLEEDGEIISHQYRMQIAQRSLVYLTIKPLNLSQAEGKPSPWLSVDTALYILKEN
                     EGQANLQLMCFTELRNREMFGWTGELGPGIYWLIPSTTGCRLKKEIKPITEEAQLVYR
                     DETGELFLTKEFRSTLSDIFEVIDLDGNGLLSLEEYNFFELRTSGEKCDEDAWAVCRE
                     NFDTKKNELTRQGFMNLNLMEAYDGEGDPHDLWVTLHSMGYNKALELTEACPFVIDIY
                     ADKCKPRIKTVHMEACSGQLEKAICKSVLNKGDAKVMDGYENIIVHTYKCDTWITSVI
                     ENKSDNKVIIHINNELSKNCVNNRGLDIFAVEVAPKSTMVCQHVMPLNERQEWIYYCV
                     YSLIS"
     misc_feature    199..618
                     /gene="EFCAB7"
                     /note="calmodulin; Provisional; Region: PTZ00184"
                     /db_xref="CDD:185504"
ORIGIN      
        1 tgcagttgcc atggtaatta aaagaaggcc aaggaccttc cggccgctgt gagagggttg
       61 cggaatccgt gaggagaatt gtctgcgctt cctcgtttgt gacctgcagt tagaatggcc
      121 atcagtccag gaagtgatgc agctttctcc agtcagaaat caacgctttc agagagtcct
      181 cgatcaaaga aatttccact aactgaagag gagatatttt atatgaattg tagagctgcc
      241 tacttaactg ttttcaaaag cagcttagat aacattattt ctaaagatca actttgctta
      301 gctcttcagc atgcaggaag aaatccatcc caaaagacta ttactaagta ttggactcct
      361 caaactgcca aactgaattt tgatgatttt tgtttaattt taagaaagga aaaacctact
      421 tcaaaagcag aattactaaa atcatttaag caattagatg taaatgatga tggctctatt
      481 ttacacactg atctttataa acttctaaca aagagaggtg agaaaatgac tcgagaagag
      541 gtaaatgcca taataaattt ggctgacgta aatgctgatg gcaaatttga ctacatcaag
      601 ttttgtaaat tatatatgac aaccaatgaa caatgtctca aaactacgct agaaaaattg
      661 gaggttgaca gtaaactgag gcgtcaacag tttggaagcc atatggaagg gtcccctgaa
      721 agggacccat caccagtacc aaaaccatca cccagaatca taagaaaaac tgatcaggaa
      781 tcattctcaa ataaaggaga cacgaggagt tctttactga caacaactag agagttcaga
      841 acatctgttt ctttcacaat taccatgggc gctaatagta accaaaactc aaagttaact
      901 gagccaaact caataaagga gtggcgttgt gtacaatcaa aaggttgctt tttcttagaa
      961 gaagatggtg aaatcattag tcatcaatat aggatgcaaa tagctcagag atccctggtt
     1021 tatctaacaa ttaagccatt aaacctgagt caagctgaag gaaaaccatc cccttggtta
     1081 tcagttgata ctgccctgta tattcttaag gaaaatgagg gtcaagcaaa tctacagctc
     1141 atgtgtttta ctgaactacg aaatagagag atgtttgggt ggactggtga actaggacct
     1201 ggaatttact ggttaattcc ttccacaact ggctgcaggc taaagaaaga aataaaacca
     1261 ataacagaag aagcccaact tgtatataga gatgaaacag gggaattatt tctcacaaag
     1321 gaatttaggt caactttatc agatatattt gaagtgattg atttagatgg aaatggtctt
     1381 ctcagccttg aagaatataa tttttttgaa ctgagaacaa gtggtgagaa atgtgatgaa
     1441 gatgcttggg ctgtctgcag agagaacttc gatacaaaga agaatgaact aacaagacag
     1501 ggctttatga atctgaatct aatggaagcc tatgatggag aaggagatcc tcatgacctt
     1561 tgggtaactc tgcactcaat gggctacaat aaagctctgg aactgacaga ggcatgccca
     1621 tttgtcatcg atatctatgc agacaaatgc aagccaagaa ttaaaactgt ccatatggag
     1681 gcatgcagtg ggcaacttga gaaggccatt tgtaaatctg ttcttaacaa aggcgatgcc
     1741 aaagtaatgg atggctatga aaatataatt gtacatactt ataagtgtga cacctggata
     1801 acatcagtta ttgaaaacaa gtcagataat aaagtgatta ttcacatcaa caacgagctg
     1861 agtaaaaact gtgtaaacaa cagaggactt gacatatttg cagtagaagt ggcaccaaaa
     1921 tctacaatgg tttgtcaaca tgtaatgcct ctgaatgaac gacaagaatg gatatattac
     1981 tgtgtgtatt cccttatatc ttaaacgttg tttttaggaa ataattttgc ttgagactat
     2041 caaactgaga agaattattt caagtttagt ctattatttg ttgatcaaca aaatgctaat
     2101 caatttaact gatgtacgta ataatctatt taatttgtat gcatttacat ttcatgtcca
     2161 tattatatac tttgttatta aaatagaaat aattttttaa tgtg
//
LOCUS       XM_032611535            1965 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus EF-hand calcium binding domain 7
            (EFCAB7), transcript variant X2, mRNA.
ACCESSION   XM_032611535
VERSION     XM_032611535.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1965
                     /gene="EFCAB7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743201"
     CDS             86..1765
                     /gene="EFCAB7"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 7 isoform X2"
                     /protein_id="XP_032467426.1"
                     /db_xref="GeneID:116743201"
                     /translation="MAISPGSDAAFSSQKSTLSESPRSKKFPLTEEEIFYMNCRAAYL
                     TVFKSSLDNIISKDQLCLALQHAGRNPSQKTITKYWTPQTAKLNFDDFCLILRKEKPT
                     SKAELLKSFKQLDVNDDGSILHTDLYKLLTKRGEKMTREEVNAIINLADVNADGKFDY
                     IKFCKLYMTTNEQCLKTTLEKLEVDSKLRRQQFGSHMEGSPERDPSPVPKPSPRIIRK
                     TDQESFSNKGDTRSSLLTTTREFRTSVSFTITMGANSNQNSKLTEPNSIKENHPLGYQ
                     LILPCIFLRKMRVKQIYSSCVLLNYEIERLKKEIKPITEEAQLVYRDETGELFLTKEF
                     RSTLSDIFEVIDLDGNGLLSLEEYNFFELRTSGEKCDEDAWAVCRENFDTKKNELTRQ
                     GFMNLNLMEAYDGEGDPHDLWVTLHSMGYNKALELTEACPFVIDIYADKCKPRIKTVH
                     MEACSGQLEKAICKSVLNKGDAKVMDGYENIIVHTYKCDTWITSVIENKSDNKVIIHI
                     NNELSKNCVNNRGLDIFAVEVAPKSTMVCQHVMPLNERQEWIYYCVYSLIS"
     misc_feature    170..589
                     /gene="EFCAB7"
                     /note="calmodulin; Provisional; Region: PTZ00184"
                     /db_xref="CDD:185504"
ORIGIN      
        1 caaggacctt ccggccgctg tgagagggtt gcggaatccg tgaggagaat tgtctgcgct
       61 tcctcgtttg tgacctgcag ttagaatggc catcagtcca ggaagtgatg cagctttctc
      121 cagtcagaaa tcaacgcttt cagagagtcc tcgatcaaag aaatttccac taactgaaga
      181 ggagatattt tatatgaatt gtagagctgc ctacttaact gttttcaaaa gcagcttaga
      241 taacattatt tctaaagatc aactttgctt agctcttcag catgcaggaa gaaatccatc
      301 ccaaaagact attactaagt attggactcc tcaaactgcc aaactgaatt ttgatgattt
      361 ttgtttaatt ttaagaaagg aaaaacctac ttcaaaagca gaattactaa aatcatttaa
      421 gcaattagat gtaaatgatg atggctctat tttacacact gatctttata aacttctaac
      481 aaagagaggt gagaaaatga ctcgagaaga ggtaaatgcc ataataaatt tggctgacgt
      541 aaatgctgat ggcaaatttg actacatcaa gttttgtaaa ttatatatga caaccaatga
      601 acaatgtctc aaaactacgc tagaaaaatt ggaggttgac agtaaactga ggcgtcaaca
      661 gtttggaagc catatggaag ggtcccctga aagggaccca tcaccagtac caaaaccatc
      721 acccagaatc ataagaaaaa ctgatcagga atcattctca aataaaggag acacgaggag
      781 ttctttactg acaacaacta gagagttcag aacatctgtt tctttcacaa ttaccatggg
      841 cgctaatagt aaccaaaact caaagttaac tgagccaaac tcaataaagg aaaaccatcc
      901 ccttggttat cagttgatac tgccctgtat attcttaagg aaaatgaggg tcaagcaaat
      961 ctacagctca tgtgttttac tgaactacga aatagagagg ctaaagaaag aaataaaacc
     1021 aataacagaa gaagcccaac ttgtatatag agatgaaaca ggggaattat ttctcacaaa
     1081 ggaatttagg tcaactttat cagatatatt tgaagtgatt gatttagatg gaaatggtct
     1141 tctcagcctt gaagaatata atttttttga actgagaaca agtggtgaga aatgtgatga
     1201 agatgcttgg gctgtctgca gagagaactt cgatacaaag aagaatgaac taacaagaca
     1261 gggctttatg aatctgaatc taatggaagc ctatgatgga gaaggagatc ctcatgacct
     1321 ttgggtaact ctgcactcaa tgggctacaa taaagctctg gaactgacag aggcatgccc
     1381 atttgtcatc gatatctatg cagacaaatg caagccaaga attaaaactg tccatatgga
     1441 ggcatgcagt gggcaacttg agaaggccat ttgtaaatct gttcttaaca aaggcgatgc
     1501 caaagtaatg gatggctatg aaaatataat tgtacatact tataagtgtg acacctggat
     1561 aacatcagtt attgaaaaca agtcagataa taaagtgatt attcacatca acaacgagct
     1621 gagtaaaaac tgtgtaaaca acagaggact tgacatattt gcagtagaag tggcaccaaa
     1681 atctacaatg gtttgtcaac atgtaatgcc tctgaatgaa cgacaagaat ggatatatta
     1741 ctgtgtgtat tcccttatat cttaaacgtt gtttttagga aataattttg cttgagacta
     1801 tcaaactgag aagaattatt tcaagtttag tctattattt gttgatcaac aaaatgctaa
     1861 tcaatttaac tgatgtacgt aataatctat ttaatttgta tgcatttaca tttcatgtcc
     1921 atattatata ctttgttatt aaaatagaaa taatttttta atgtg
//
LOCUS       XM_032611547            1139 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neudesin neurotrophic factor (NENF),
            mRNA.
ACCESSION   XM_032611547
VERSION     XM_032611547.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1139
                     /gene="NENF"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743212"
     CDS             237..755
                     /gene="NENF"
                     /codon_start=1
                     /product="neudesin"
                     /protein_id="XP_032467438.1"
                     /db_xref="GeneID:116743212"
                     /translation="MTGPAPGRRLRWLAALALVLALAAGLLAAGAGQAPRPAERGPPV
                     RLFTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAK
                     MSLDPADLTHDTTGLTSEELESLDDVFTKVYKAKYPIVGYTARRILNEDGSPNLDFKP
                     EDQPHFDIKDEF"
     misc_feature    378..566
                     /gene="NENF"
                     /note="Cytochrome b5-like Heme/Steroid binding domain;
                     Region: Cyt-b5; pfam00173"
                     /db_xref="CDD:459698"
ORIGIN      
        1 cagtctggag tcgggagccc ccagaatcct agctccaagt tttcggcttc ggcgtcccag
       61 cggccgagca cgccccgcag cgcgtggaag gcgcggagtc cggctcctgg ctcccggctc
      121 cggggcctcc gggcgccggg cgggcgcgcg cggggtgggg ttccagggcc gcggggcgcg
      181 cgcgcgcgcg ggccccgccg cccaggccgc cccaggcccg attcggtggg ctcaccatga
      241 caggccccgc gcccgggcgg cggctgcggt ggctggccgc gctggccctg gtcctggccc
      301 tggccgcggg gctcctcgca gccggggccg ggcaggcgcc gcgccctgcc gagcggggtc
      361 ctccggtgcg gctcttcacg gaggaggagc tggcccgcta cggaggggag gaggaagatc
      421 agcccatcta catggcagtc aaaggggtgg tgttcgatgt cacttctgga aaggagtttt
      481 acggacgagg agccccctac aacgccttga ccgggaagga ctccaccaga ggggtggcca
      541 agatgtccct ggatcctgca gacctcaccc atgacactac gggcctcaca tccgaggaac
      601 tggaatccct ggatgatgtc ttcaccaaag tgtacaaagc caaatatccc atcgttggct
      661 acacagcccg aagaatcctc aacgaggacg gcagccccaa cctggacttc aagcctgaag
      721 accagcccca tttcgacata aaggacgagt tctgatctgc aggagaccgt tcctgggagg
      781 gtgaggcagg gaggcactca gatgcaaact ctcccgcaaa acaggctgct ggggcctctg
      841 gtcaccagat ctgaataaag cagatgttta acctggaaca ctgaatgccc tttattgccc
      901 ttggtccact gttctaccca cctaggtatc ctgcccgcac accagccagg gaggtaatag
      961 tcgctgaggg gggacacctc ctaggtgtca acgtgggcta tggggacaga ggaattacga
     1021 gtgaccttta ctgcttcttt atattgctct gtacttgcca ggttttctac catgaccatg
     1081 tgtacttcag aataagcgcc aaaataaact tcctattttc acaaaaggag aattcttcc
//
LOCUS       XM_032611555             457 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate cyclase activator 2A (GUCA2A),
            mRNA.
ACCESSION   XM_032611555
VERSION     XM_032611555.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..457
                     /gene="GUCA2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743218"
     CDS             1..330
                     /gene="GUCA2A"
                     /codon_start=1
                     /product="guanylin"
                     /protein_id="XP_032467446.1"
                     /db_xref="GeneID:116743218"
                     /translation="MNTFLLSALCLLGAWAALAGGVTVKDGEFSFSLESVKKLKDLQQ
                     LQEPRRSRNTGGSLVPILCSSLRFPEELKPLCKEPNAQEILERLEAIAEDPSTCEICA
                     YTACAGC"
     misc_feature    64..327
                     /gene="GUCA2A"
                     /note="Guanylin precursor; Region: Guanylin; pfam02058"
                     /db_xref="CDD:460430"
ORIGIN      
        1 atgaacacct tcctgctctc tgcactgtgc ctccttgggg cctgggccgc cctagcaggg
       61 ggagtcaccg tgaaggatgg agagttctcc ttttccctgg agtcagtgaa gaagctcaag
      121 gacctccagc agctccagga gcctaggagg tctagaaata ctggtggatc cctcgttccc
      181 atcctctgta gctccctgag gtttcccgaa gaactcaagc ctctctgcaa ggagcccaat
      241 gcccaggaga ttctggagag gctcgaggcc atcgccgagg atccgagcac gtgtgagatc
      301 tgtgcctaca ctgcctgtgc tggatgctag gacggcgggt gctcgctacc ttctgtccct
      361 cccccgcagg ccgctcccct cctcgcagct ccacctaccc agaatggagg agtgacgaga
      421 gggcagcctg gcgaggccca gcccctgccc gcatccg
//
LOCUS       XM_032611562            2043 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CUB domain containing protein 2 (CDCP2),
            mRNA.
ACCESSION   XM_032611562
VERSION     XM_032611562.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2043
                     /gene="CDCP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein"
                     /db_xref="GeneID:116743220"
     CDS             171..1793
                     /gene="CDCP2"
                     /codon_start=1
                     /product="CUB domain-containing protein 2"
                     /protein_id="XP_032467453.1"
                     /db_xref="GeneID:116743220"
                     /translation="MLAELEFCLLLAVTLLSPVPRAQAMEGVKCGGVLSAPSGNFSSP
                     NFPRLYPYNTECIWLIVVAEGSSVLLTFHAFDLEYHDTCSFDFLEIYNGAPGDQGNLL
                     GRFCGQVPPPPFASSWNVMSVVFHSDKHVASRGFSAGYQKDVCGGVLTGLSGVLTSPE
                     HPNNYPNNVECHWVIRASGPATVKLVFVDFQVEGSEQCTYDYVAVLGGPGPAHGHHYC
                     GSSRPPTLVSLGHELQVVFKSDFNIGGRGFKAYYFSGECQEVYTAVRGNFSSPQYPSS
                     YPNHIRCHWTIRLPLGYRVKVFFLDLELEGPNSLTKTCDFDHLAAFDGASEEAPLLGS
                     WCGHRLPPPVTSSHNQLLLLLHTDRSTTRRGFSVAYIGVVPMNVSCSRTDFQILISAQ
                     AVAPLERTKVYLGSRSCAAQEVGSNFRIQARFDTCGTESQRRNNTSVIVSVLYIDFSA
                     GGQEDIHEYEVRCEPRRKEASVHLLSGSHWLGPYAATAEHLQEAPPRDEAEALEGPVA
                     MVAQDISDIIFLGLCILAGVLMVIAIVVLMLL"
     misc_feature    258..590
                     /gene="CDCP2"
                     /note="CUB domain; Region: CUB; pfam00431"
                     /db_xref="CDD:395345"
     misc_feature    order(282..284,288..290,294..296,375..377,390..392,
                     507..509,579..581,585..587,591..593)
                     /gene="CDCP2"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    603..932
                     /gene="CDCP2"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(627..629,633..635,639..641,720..722,735..737,
                     843..845,915..917,921..923,927..932)
                     /gene="CDCP2"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    939..1280
                     /gene="CDCP2"
                     /note="CUB domain; Region: CUB; pfam00431"
                     /db_xref="CDD:395345"
     misc_feature    order(963..965,969..971,975..977,1056..1058,1071..1073,
                     1197..1199,1269..1271,1275..1277)
                     /gene="CDCP2"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
ORIGIN      
        1 cctaagttgc ttcccttctc catccagtgc ggccagtgca gacctccgaa gtgtcaacct
       61 ggtgacacta gatccgtcac cttaggcctc acctctcttt cccctgctcc agaccctcag
      121 gtcctggcct gccccgagct cggcagacct gcgggccccc cagcaaggag atgctggcag
      181 agctggagtt ctgtcttctg ctggcagtga cactgctgag cccagtcccc agggcccaag
      241 ccatggaagg tgtcaaatgt gggggtgtgc tctcagcacc ttctggaaac ttctccagcc
      301 ccaacttccc caggctctac ccctacaaca cggagtgcat ctggctgatt gtggtagctg
      361 agggctcctc cgtgctgctc accttccacg ccttcgacct ggagtaccat gacacctgca
      421 gcttcgactt cctggagatc tacaacgggg cccccgggga ccagggcaac ctgctgggga
      481 ggttctgcgg ccaggtgccc ccaccgccct tcgcctcctc ctggaacgtc atgtctgtgg
      541 tcttccactc agacaagcac gtggccagcc gaggcttttc cgcaggctac cagaaagatg
      601 tgtgtggtgg cgtcctgacg ggcctgtcgg gggtcctcac cagccccgag caccccaaca
      661 actaccccaa caatgtggag tgccactggg tgatccgagc ctctggcccc gccaccgtca
      721 agctggtctt cgtggacttc caggtggagg gcagtgagca gtgcacctac gactacgtgg
      781 ctgtgcttgg agggcccggc cccgcccatg ggcaccacta ctgcggcagc tccaggcccc
      841 ccacgctcgt gtcgctgggc cacgagctgc aggtggtctt caagtctgac tttaacatcg
      901 ggggccgggg cttcaaggcc tactacttct caggagaatg ccaggaggta tacacggcgg
      961 tgcggggcaa cttctccagc ccacagtacc ccagctccta ccccaaccac atccggtgcc
     1021 actggaccat ccgcctgcct cttggctacc gggtcaaagt gttcttcctg gacctggaac
     1081 tggaggggcc caacagcctg accaagacct gtgactttga ccatctggca gccttcgacg
     1141 gggccagcga ggaggcgccc ctgctgggca gttggtgtgg ccaccgcctg ccaccaccgg
     1201 tcacctcgag ccacaaccag ctcctgcttc tgctgcacac ggaccgtagt accacccgca
     1261 ggggcttctc tgtggcctac attggagtgg tccccatgaa cgtgagttgc tcccgcacgg
     1321 acttccagat cctgatctcc gcgcaggcag tggcccctct agaacggacc aaagtctacc
     1381 tgggcagccg gagctgtgct gctcaggaag tcggcagcaa cttccggatc caggcccgct
     1441 ttgacacctg cggcactgag tctcagagaa gaaataacac ttcagtgatc gtcagcgtgc
     1501 tgtacatcga cttctcagcc ggtgggcagg aggatatcca cgaatacgag gtccgctgtg
     1561 agccgaggcg aaaggaggcc tctgtccacc tgctgtccgg ctcccactgg cttgggccct
     1621 atgctgccac ggcagagcac cttcaggagg caccacccag ggacgaggca gaggcactgg
     1681 agggccccgt ggccatggtg gcccaggaca tcagtgacat catcttcctg ggcctttgca
     1741 tcctggctgg agtcctcatg gtcattgcca tagtggtcct gatgctgctg taagcaggga
     1801 gggtagggaa gtggcatctg gcattcctgg gaggcagctt gggcacccca caacaggggc
     1861 aggaccaggc cttgctgact ttatgatgac catgggcaag tcactatccc cctctgagcc
     1921 tcagtttcct ggggaccttt actctgccct gcttatctca cagggctggc gtgaggctca
     1981 gagaagagga tggataagag ctgcgtaaac tatagcatgc catgcatgtg tgtgcaattg
     2041 ttg
//
LOCUS       XM_032611573            1046 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus stum, mechanosensory transduction
            mediator homolog (STUM), mRNA.
ACCESSION   XM_032611573
VERSION     XM_032611573.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1046
                     /gene="STUM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 13%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743226"
     CDS             263..694
                     /gene="STUM"
                     /codon_start=1
                     /product="protein stum homolog"
                     /protein_id="XP_032467464.1"
                     /db_xref="GeneID:116743226"
                     /translation="MEPSHKDSETAAAAAAVAAVAAADRGTSSSSGVVVQVREKKGPL
                     RAAIPYMPFPVAVICLFLNTFVPGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAA
                     LIQMLTAIVMVGWIMSIFWGMDMVILAISQGYKEQGIPQQL"
     misc_feature    398..649
                     /gene="STUM"
                     /note="Ectodermal ciliogenesis protein; Region: Spec3;
                     pfam15795"
                     /db_xref="CDD:464875"
ORIGIN      
        1 tgtcaccgag tgtcacgccg ccctccccgc ccctccgccg gggctgtggg agcgcagcgg
       61 agcgcgcggc agagggccgg gcgcttgggg acgcgggagt gcggggttct gggctagccg
      121 cgcggcacac cgagcacgct ggacgcctga gctcggcgtg gagcccggag cccggagccc
      181 ggagccggcc gccacccgcc tcctgtgcac tgggcgacag tcccggccgc ggcagcccgg
      241 ctcccgggga gcgcgccccg ccatggagcc ttcgcacaaa gactccgaga cggcggcagc
      301 ggcggcagcg gtggctgcgg tggcggcggc ggaccggggg acgtcctcgt ccagcggtgt
      361 ggtggtgcag gtccgcgaga agaagggccc cctgcgcgcc gccatcccct acatgccctt
      421 ccccgtggcc gtcatctgtc tcttcctcaa cactttcgtg cctggactgg ggacgttcgt
      481 ctcggccttc accgtgctgt gtggcgcccg cactgacctc ccggacaggc acgtgtgctg
      541 cgtcttctgg ctgaacatcg ctgcggccct catccagatg ctcacggcca tcgtcatggt
      601 gggctggatt atgagcatct tctggggcat ggacatggtc atcctcgcca tttcccaagg
      661 ctacaaggag cagggcatcc cacagcagct gtgagcccgg gcgagccact gagaagcccg
      721 gtgtcccgga gggccacgtc aggcagaggc gggcacgggg tcttcacatg ttgtcttctg
      781 ccgcttcccg ggtttggagt ggaaagaggg gacttaaaaa tattatttat tttgaaaacg
      841 catctgcttc tctcagcagg ctctaagggc taccagctcc tcccgctgct ccagaaagcc
      901 ctgtagtgca gacacgcaga gcatctgggt tgggtgggga gtgggatgga gatgggaatg
      961 cctagagaga ggcaggagcg ccccggctcg gcccgcttcg cgtcacccac cgcccactgc
     1021 gagggcgcga ggggccgcca gtccag
//
LOCUS       XM_032611585            7122 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SLIT-ROBO Rho GTPase activating protein 2
            (SRGAP2), mRNA.
ACCESSION   XM_032611585
VERSION     XM_032611585.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-133               VOSU01000011.1     151487778-151487910 c
            134-742             VOSU01000011.1     151485419-151486027 c
            743-935             VOSU01000011.1     151395528-151395720 c
            936-1098            VOSU01000011.1     151367925-151368087 c
            1099-1161           VOSU01000011.1     151328814-151328876 c
            1162-1377           VOSU01000011.1     151321387-151321602 c
            1378-1506           VOSU01000011.1     151320685-151320813 c
            1507-1731           VOSU01000011.1     151312935-151313159 c
            1732-1833           VOSU01000011.1     151309156-151309257 c
            1834-1866           VOSU01000011.1     151307898-151307930 c
            1867-1947           VOSU01000011.1     151307816-151307896 c
            1948-2031           VOSU01000011.1     151307731-151307814 c
            2032-2116           VOSU01000011.1     151299690-151299774 c
            2117-2144           VOSU01000011.1     151296909-151296936 c
            2145-2169           VOSU01000011.1     151295026-151295050 c
            2170-2230           VOSU01000011.1     151289583-151289643 c
            2231-2308           VOSU01000011.1     151281682-151281759 c
            2309-2443           VOSU01000011.1     151280622-151280756 c
            2444-2549           VOSU01000011.1     151278715-151278820 c
            2550-2774           VOSU01000011.1     151268541-151268765 c
            2775-2854           VOSU01000011.1     151264848-151264927 c
            2855-3035           VOSU01000011.1     151262624-151262804 c
            3036-3182           VOSU01000011.1     151260994-151261140 c
            3183-3221           VOSU01000011.1     151257703-151257741 c
            3222-3546           VOSU01000011.1     151257166-151257490 c
            3547-7122           VOSU01000011.1     151251467-151255042 c
FEATURES             Location/Qualifiers
     source          1..7122
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7122
                     /gene="SRGAP2"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 long SRA reads, 6 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743231"
     CDS             676..3930
                     /gene="SRGAP2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: SLIT-ROBO Rho
                     GTPase-activating protein 2"
                     /protein_id="XP_032467476.1"
                     /db_xref="GeneID:116743231"
                     /translation="MTSPAKFKKDKEIIAEYDTQVKEIRAQLTEQMKCLDQQCELRVQ
                     LLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLL
                     LNQVKRESRDHTTLSDIYLNNIIPRFVQVSEDSGRLFKKSKEVGQQLQDDLMKVLNEL
                     YSVMKTYHMYNADSISAQSKLKEAEKQEEKQIGKSVKQEDRQTPRSPDSTSNVRIEEK
                     HVRRSSVKKIEKMKEKRQAKYTENKLKAIKARNEYLLALEATNASVFKYYIHDLSDLI
                     DQCCDLGYHASLNRALRTFLSAELNLEQSKHEGLDAIENAVENLDATSDKQRLMEMYN
                     NVFCPPMKFEFQPHMGDMTSQLCAQQPVQSELVQRCQQLQSRLSTLKIENEEVKKTME
                     ATLQTIQDIVTVEDFDVSDCFQYSNSMESVKSTVSETFMSKPSIAKRRANQQETEQFY
                     FTKMKEYLEGRNLITKLQAKHDLLQKTLGESQRTDCSLARRSSTVRKQDSSQAIPLVV
                     ESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDSIAGVLK
                     LYFRGLEHPLFPKDIFHDLMACVTMDNLQERALHIRKVLLVLPKTTLIIMRYLFAFLN
                     HLSQFSEENMMDPYNLAICFGPSLMSVPEGHDQVSCQAHVNELIKTIIIQHENIFPNP
                     RELEGPIYSRGGSTEDYCDSPHGETTSAEDSTQDVAAEHHTSDDECEPIEAIAKFDYV
                     GRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTEDGVVERSSPK
                     SEIEVISEPPEEKVTARAGASCPSGGHVADIYLANINNTLHIENSKPTTTKQRKRPES
                     GSIRKTFRSDGHGLSSSLTDSASPGVGASCRPSSQPILSQSLPKEGPDKCSISGHGSL
                     NSISRHSSLKNRLDSPQIRKTVTAGRSKSFNNHRPMDPEVIAQDIEATMNSALNELRE
                     LERQSSVKHTPDVVLDTLEPLKTSPVVAPTSEPSSPLHTQLLKDPEPTFQRSASTAGD
                     IACAFRPVKSVKMAAPVKPPATRPKPTVFPKTNATSPGVNSSASPQSTDKSCTV"
     misc_feature    751..1542
                     /gene="SRGAP2"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating
                     Protein 2; Region: F-BAR_srGAP2; cd07682"
                     /db_xref="CDD:153366"
     misc_feature    order(766..768,775..777,796..798,805..810,817..819,
                     826..831,838..843,850..852,862..864,871..873,883..885,
                     1000..1002,1009..1011,1339..1341,1351..1353,1426..1428,
                     1438..1440,1447..1449,1456..1461,1468..1470,1480..1482,
                     1489..1491,1501..1503,1516..1518,1525..1530,1537..1539)
                     /gene="SRGAP2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153366"
     misc_feature    2134..2697
                     /gene="SRGAP2"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain present in srGAPs. srGAPs are
                     components of the intracellular part of Slit-Robo
                     signalling pathway that is important for axon guidance and
                     cell migration. srGAPs contain an...; Region:
                     RhoGAP_srGAP; cd04383"
                     /db_xref="CDD:239848"
     misc_feature    order(2254..2256,2371..2373,2383..2385,2590..2592,
                     2599..2604,2668..2670)
                     /gene="SRGAP2"
                     /note="putative GTPase interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239848"
     misc_feature    2254..2256
                     /gene="SRGAP2"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239848"
     misc_feature    2869..3027
                     /gene="SRGAP2"
                     /note="Src homology 3 domain of Slit-Robo GTPase
                     Activating Proteins 1, 2, and 3; Region: SH3_srGAP1-3;
                     cd11955"
                     /db_xref="CDD:212888"
     misc_feature    order(2884..2886,2890..2892,2899..2901,2911..2913,
                     2965..2970,3007..3009,3013..3018)
                     /gene="SRGAP2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212888"
     misc_feature    3601..>3909
                     /gene="SRGAP2"
                     /note="envelope glycoprotein C; Provisional; Region:
                     PHA03269"
                     /db_xref="CDD:165527"
ORIGIN      
        1 gcggagttgg cggaggctcc tcaggggact gggggaccga tctgcgtaga cgcgggtggc
       61 ggggaagaga ggggaggaga gctctgagtg ggaagcggag ccgggggcct aggacccgtc
      121 gcgtcagagc caggcaagtg aaccggagca aacgacttcc gatccagtct gcgctgctgc
      181 ggctcccgtt tgggatttga tttgcagcat cttcgaggct gtgcaacaaa aaaccgcgaa
      241 gcacgcccag ccctcccccg gcaccccgat acgcacccac tccctcccgg ggacccagct
      301 gggcgagtcc acatccccgc gccccccaca ccatgttgtg cggaaggact tccactcccc
      361 gcctgtgtcg ttgatgtcag accccaggcc agcctccggg cgctgcagtt ctcccggcta
      421 atgctgaggc tgcggcttgg gctctagcac aggaaccaac cgccgccgcg ccggccccag
      481 cgcccaccgt ctgcatgtgt ccgccgtagc cgcctgccca gcccgcagcc cgcgctcccc
      541 ggagcgctgg agaccaccgc ggggggcccc ttctgccttt tggagaagcg atcttggagg
      601 tattgatttc ggtggttgga tttttcccgt ggatttatca attcacaatt cgaatttgga
      661 agaaagaagg aaaacatgac gtctccagcc aaattcaaaa aggataagga gattatagca
      721 gagtacgata ctcaggtcaa agagatccgt gctcagctca cagagcagat gaaatgcctg
      781 gaccagcagt gtgagctccg agtgcagctg ttgcaggacc tccaggactt cttccggaag
      841 aaggctgaga tcgagatgga ctactcccgc aacctggaga agctggcaga gcgcttcctg
      901 gccaagacgc gaagcaccaa ggaccagcag ttcaagaagg atcaaaatgt tctctctcca
      961 gtcaactgct ggaatctcct cttaaaccag gtgaagcggg agagcaggga ccacaccacc
     1021 ctgagtgaca tctacctgaa taatatcatt cctcgatttg tccaagtcag cgaggactca
     1081 ggaagactct ttaaaaagag taaagaagtc ggccagcagc tccaagatga tttgatgaag
     1141 gtcctgaatg agctctactc ggtcatgaag acatatcaca tgtacaatgc cgacagcatc
     1201 agtgctcaga gcaagctaaa ggaggcggag aagcaggagg agaagcaaat tggaaaatcc
     1261 gtaaagcagg aggaccggca gaccccacgc tcccctgact ccacatccaa cgtccgcatt
     1321 gaggagaagc atgtccggag gagctcagtg aagaagatcg agaagatgaa ggagaagcgc
     1381 caagccaagt atacagagaa taagctgaag gccattaaag cccggaatga gtacttactg
     1441 gctttggaag caaccaatgc atctgtcttc aagtactaca tccacgacct gtctgacctt
     1501 attgatcagt gctgtgactt aggctaccac gccagcctga accgcgcgct acgcaccttc
     1561 ctttccgctg agttgaatct ggaacagtca aagcacgagg gtctggatgc catcgagaat
     1621 gctgtagaaa acctcgatgc caccagtgac aagcagcgcc tcatggagat gtacaacaat
     1681 gtcttctgtc cacctatgaa gtttgagttc cagccacaca tgggggacat gacttcccag
     1741 ctctgtgccc agcagcccgt ccagagtgag ctggtacaga gatgccaaca gctacaatct
     1801 cgcttatcca ccctgaagat tgagaacgaa gaggtaaaga agacaatgga ggccactctg
     1861 cagaccatcc aggacattgt gaccgtcgag gattttgatg tgtccgattg cttccagtac
     1921 agcaactcta tggaatccgt caagtccacg gtctcagaaa ccttcatgag caaacccagc
     1981 attgccaaga ggagagccaa ccagcaagag acagagcagt tctatttcac gaaaatgaag
     2041 gagtacctgg agggcaggaa cctcatcacc aagctacaag ccaagcacga ccttctccag
     2101 aaaaccctgg gagagagtca gcggacagat tgcagtctgg ccaggcgtag ctcaactgtg
     2161 aggaaacagg attccagcca ggcaattcct ttggtggtag aaagctgtat ccggtttatc
     2221 agcagacacg gactacagca tgagggaatc ttccgagtgt caggatcgca ggtggaagtg
     2281 aatgacatca aaaacgcctt tgagagagga gaggaccccc tggctggaga ccagaatgac
     2341 catgacatgg actccatagc tggcgtcctg aagctttact tccgggggct ggaacaccct
     2401 ctcttcccca aggacatctt ccatgaccta atggcctgcg tcacaatgga caacctgcag
     2461 gagagagctc tgcacatccg gaaggtcctc ctggtcctgc ccaaaaccac tctgattatc
     2521 atgagatacc tctttgcctt cctcaaccat ttatcacagt tcagtgaaga gaacatgatg
     2581 gatccctaca acctcgccat ctgcttcggg ccctcgctga tgtcagtgcc tgagggccat
     2641 gaccaggtgt cctgccaagc ccacgtgaat gagctgatca aaaccatcat catccagcac
     2701 gagaacatct tcccaaaccc tagggagctg gagggcccca tctacagcag aggagggagc
     2761 acggaggatt actgtgacag ccctcacgga gagactacct cggctgaaga ctccacccag
     2821 gatgtggccg cagagcacca cacaagtgat gacgagtgtg agcccatcga ggccattgcc
     2881 aagtttgact acgtgggccg gacagcccga gagctgtcct tcaagaaggg ggcatccctg
     2941 ctgctctacc agcgggcttc cgacgactgg tgggaaggcc ggcacaatgg catcgacgga
     3001 ctcatccccc atcagtacat cgtggtccaa gacaccgagg acggtgtcgt ggagaggtcc
     3061 agccccaagt ctgagattga ggtcatttct gagccacctg aagaaaaggt gacagccaga
     3121 gcgggggcca gctgtcccag tgggggtcat gtagccgata tttatcttgc aaacatcaac
     3181 aacaccttac acattgagaa ctcaaagccc acgaccacca agcaaaggaa gcggccagaa
     3241 tctgggagca tccggaaaac atttcggagc gacggccatg ggctgagcag ttccctgact
     3301 gattccgcgt ccccgggggt gggggcaagc tgccgcccat cttcccagcc catcctgagc
     3361 cagagtctcc ccaaggaagg gccagataag tgttccatca gtgggcatgg gagtctcaac
     3421 tccatcagcc gtcactcatc cctgaagaat cggctggaca gtccacagat ccggaagacg
     3481 gtgacagcag gcaggtcaaa aagcttcaat aaccaccggc ccatggaccc tgaggtcatt
     3541 gcacaggata ttgaggcgac catgaactct gccctgaacg agctgcggga gctagaacgg
     3601 cagagcagcg tcaagcacac cccggacgtg gttctggaca ccttggagcc cctcaagacc
     3661 tcccctgtgg tggcccccac atcggagccc tccagccccc tgcacactca gctcctcaag
     3721 gaccctgagc ccaccttcca gcgtagcgcc agcactgctg gggacatcgc ctgcgccttc
     3781 cggcctgtca agtctgtcaa gatggcggcc ccagtcaagc cgccagccac acggcccaag
     3841 cccactgtct tccccaaaac aaatgccact agccccggtg tcaactcctc tgcctcccca
     3901 cagtccactg acaagtcttg tactgtctga gggatgtaat ttaattgttc tagacaaggg
     3961 gactggaggg actgactgtt attaaaatct tcctatttaa ctagcttggg gacttcagtt
     4021 gaaaattagg ttctaagttg ttcttgcagg aattagcctc cccatcaccc aaaaccttga
     4081 gaatgaagcc ctcgttatcg cccagccctc ccccaccctt cccgctacct tctgcttccc
     4141 ccagttgtcg taatccagcc agctacagta catactgttc ttaggttagc cagagatagg
     4201 tttttccatt atcaggtcac tgtgaaatct ggcaaggcaa gtcacagggc cgtgggctga
     4261 agtctcagtc ccctcagaca caggggatgc ctaaccagat ggttggctgc tgacggccag
     4321 ctctcagtgg catcttgttt tgggtactga ttatagagaa tcatatacag ttcattctct
     4381 gttttacaca cacacacaca cacacacaca cacaactttt tctagtctct ggcatgtgta
     4441 gcctctcctg gtcctagata gactggtctc tttgtaagat attgtggcaa ttcacacagg
     4501 agccaccagg ggtctctgtt tccgttacaa atctcaactc tgtctgggcc agagaaccta
     4561 gcctttgact ctctccaccg tgtgaaattt agcaggatgg gactcaatcc tgtaaactgt
     4621 ttggggttgg gggctttctc tctgtcttct ttctattggt gtgaattgat cattggtgtt
     4681 tgcttttgct ctcctccatt ctctggaact acaacccaat cttcttacag aacttctaaa
     4741 gtttttctga atgtacagac atttctcggg ttcctatctt tgtctctgat gtaccgtttt
     4801 ccatttaaga cattttcctg tgtaagacag ttttatagtt ggttgctttt agggtaaaga
     4861 ggcttaagac agttttattg tgtttttggc aggtttggaa aaggtaagaa atgggtcctt
     4921 cctcccactt ttttgggtac ttaagacata aaattcataa tcctcttaaa aattaaattc
     4981 agctttgcta atcctaaaat tgttcccaaa tgaaaatgta ttctaggttt atcccctagt
     5041 tgggttattc cacaaggcct ctcttcaggg accagtgggg gcttagggag ccctagttag
     5101 attaaagaga gacattgctc cttaaaactg gtcttcaggg gcttccctgg tggcgcagtg
     5161 gttgggagtc tgcctgccga tacagggaac atgggttcgt gccccggtcc gggggttccc
     5221 acatgccgcg gagtggctgg gcccgtgagc catggccgct gagcctgcgc gtccggagcc
     5281 tgtgctccac aacgggagag gccacaacag tgagaggacc gcgtaccgca aaaaaaaaac
     5341 aaaactggtc ttcatttatc cagacaagca caactaagag aactcttcgc ccctcgggct
     5401 ttaaagtctt tccaaggccc gaatctaaga aaatcaaaaa ttggatgctg aatattttgg
     5461 ccttccttcg gctatttttc tggttcacct ccaaaaagca aaaataatac ccttgtctgc
     5521 tttaatttgc tttccaaatc tggtgcccat ggtcccagct cccctaacat catgctatcc
     5581 caggaggacc agggctgggg acagtcaaac cccaggctca tgggtctcag acaactactt
     5641 gagttaaagt tgaaactcat tcctcttctc tgttttctgg ttttaaagct gtgctttttg
     5701 ccttattttc caccgtttag gagagatagc gggttgccat tcagatagga aaatctgaat
     5761 tttcttatct ttggcccaga aaatgctctt cagaccaaca ttttgaagtt ggtagttggc
     5821 tctatggaaa gcagtaggat tttcctcctt ttgtgtgaag gaaaagagaa gctttgtagg
     5881 aagttgctag ttagaaaagt agcctgcaac accaggaaaa ccatcccaag agccaggagg
     5941 gagagatgaa gaactccttc agtgcgtgtg tcaacctgcg agaggcaacc cacagtcctc
     6001 cgcattcttg gcttttgttg atctgtttag tggcctgtcc ttgtctgtca ctggacttac
     6061 acaggtcctg agccaatagg ggcctttcat acccacggat ctgtttcctt gctggaaatg
     6121 aaaccctacc cttcacttga cattcctttt gatccaactg gtcaaaattg gtgcccatac
     6181 ctgccctttt cctccttttc cggcacatcc ttctctaaga aaggaaaggc aaagctcctt
     6241 aatgacaaca cctttggcct gttctgttgc tcctgccttg tttctctttc agccctgtac
     6301 atgacttgca ttcaccatcc cctcggtcag tgtccatctg ctgatttgca tcatgaactg
     6361 gacagtgtgt gagaggtcac ctgctacccc cgctctggga gccgagttgt cttcccctct
     6421 ctggtgctcc tgacacctgt gagatggtcc tgtccagagg actaggaacc ttaggaggag
     6481 agtccttctc ggcagagctc attgcaatca tctggaatct aggttgcaca ctgtgatttt
     6541 tacaccgaaa agccaaacgg agctggccac ccagggccta gggagaccag tcttcctcgg
     6601 atatgcttcc taaaccagca tgatgcttcg aagaacccca gtctgcccct ggaggcatgg
     6661 atccttttcc cggtgtggac tctgatggtc agtctttggg aagcagaggt ggggcggggc
     6721 taccagcatc ccaatttgga aaagagagga gtttgcagcc agcagcctgt aaactggaaa
     6781 cactggtctc agccaacctc ctcagggtgc cctggtttct ccccaaagag atgagagatg
     6841 atgccagcaa caggatgaac agaccactgg aaggactggt gtatatgtac ttcacgttca
     6901 gaagagaagt tagatcttcc agggaattgc aattttgtgg cgtctgactt gtatgtcacg
     6961 tttgtgtaaa atggtatatt ctttaaaata gtgttgataa ctggaatatt gtatgtatgc
     7021 ttggagatgc tttgtgtgaa cctaagactg tcactcaaca gatgttggat tggggaaaat
     7081 ccaaagcaca acttcgaaat aaaatacgtt tttaggtttc ga
//
LOCUS       XM_032611595            3430 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit epsilon (IKBKE), transcript variant X1, mRNA.
ACCESSION   XM_032611595
VERSION     XM_032611595.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3430
                     /gene="IKBKE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743242"
     CDS             333..2654
                     /gene="IKBKE"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit epsilon isoform X1"
                     /protein_id="XP_032467486.1"
                     /db_xref="GeneID:116743242"
                     /translation="MQSTVNYLWHTDDLLGQGATASVYKARNKKSGELVAVKVFNTAS
                     YLRPREVQVREFEVLRKLSHQNIIKFFAVEETGGSRQKVLVMEYCSSGSLLSALESPE
                     NAFGLPEDEFLVVLRCVVAGVNHLRENGIVHRDIKPGNILRLVGEEGRSIYKLTDFGA
                     ARELDDDEKFVSVYGTEEYLHPDMYERAVLRKPQQKAFGVAVDLWSIGVTLYHAATGS
                     LPFVPFGGPRRNKEIMYRITTEKPTGAIAGTQRLENGPLEWSYTLPITCQLSMGLQSQ
                     LVPILANILEVEQAKCWGFDQFFAETSDILQRVVVHVFSLPQAVVHHVYIHAHNTIAI
                     FLEAVYKQTNVAPQHQEYLFEGHLCVLEPSLSAQHIAHTTASSPLTLFSMVSETPKGL
                     AFRDRCRRQIWVLILHAPLKCHVTRAGGLPNLLHSVQRSGKETPMETGRCGFNVVSTV
                     CAALDIPKFFPKVDLQADYNTAKGVLGAGYQALRLAQALLTGQELMLRGLHWFVESLQ
                     ATCRRTLEVTRMALLFLSSSLGTERFSNVAGVPEIQELKRAAELRSKLRTLAEVLSRC
                     SHNITETKMTLSNLSSELMKNRDQVHADRSIQQIQCCLDKMYLIYKQFKKSRMRPGLG
                     YNEEQIHKLDKVNFSHLAKRLLQVFQEERVQKYQASLATHGKRMRVVHETRNHLRLVG
                     CSVAACNTEAQGAQESLSKILDWLSHQLLQDRTKEAQASPPTTAPYPSPALKDLVFHM
                     QELCKEMKVLASDLQDNNRVIEGLSRVPSAPDI"
     misc_feature    375..1322
                     /gene="IKBKE"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(375..386,393..395,399..401,438..440,444..446,
                     534..536,588..599,735..737,747..752,756..758,798..803)
                     /gene="IKBKE"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
     misc_feature    1254..1481
                     /gene="IKBKE"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinase subunit epsilon (IKK-E);
                     Region: Ubl_IKKE; cd17128"
                     /db_xref="CDD:340648"
     misc_feature    order(1278..1280,1389..1391,1476..1478)
                     /gene="IKBKE"
                     /note="putative hydrophobic patch [polypeptide binding];
                     other site"
                     /db_xref="CDD:340648"
     misc_feature    1701..2441
                     /gene="IKBKE"
                     /note="TANK-binding kinase 1 coiled-coil domain 1; Region:
                     TBK1_CCD1; pfam18394"
                     /db_xref="CDD:465742"
     misc_feature    2508..2648
                     /gene="IKBKE"
                     /note="C-terminal domain of non-canonical Inhibitor of
                     kappa B kinases, IKK-E and TBK1, and similar proteins;
                     Region: TBK1_IKKE-like_C; cl41735"
                     /db_xref="CDD:425366"
     misc_feature    order(2526..2531,2535..2543,2547..2552,2559..2564,
                     2568..2573,2580..2585,2589..2594,2601..2606,2610..2615,
                     2619..2627,2631..2639)
                     /gene="IKBKE"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409261"
ORIGIN      
        1 gccggcaggg agctgagctg agtgttggcc tttgctccca gttctcccag ctcccagggt
       61 ggcacgcggc cacttcaact ggcccatctt caggttccca gggcccgtgg ccaccaggat
      121 gctatgggcg ctgcccatga atgacaacaa gccctgaaag ctcggggggc gtcacgcagt
      181 cccacaagcc tgcatgcccc acagccgaga tgggctcagc tcctggactt gccacagaca
      241 gaaaacataa cacacacttg ctggggagag tctttgcctg atccggggct gctcagagca
      301 caggaaggtg gccggccagc tgggagcaag agatgcagag taccgtcaat tacctgtggc
      361 acacggatga cctgctgggt cagggggcca ctgccagtgt gtacaaggcc cgaaacaaga
      421 aatccgggga gctggttgct gtgaaggtct tcaacacggc cagctacctg cgaccccgcg
      481 aggtgcaggt gagggagttt gaggtcctgc ggaagctgag ccaccagaac atcatcaagt
      541 tctttgcggt ggaggagacg gggggcagcc ggcagaaggt gctggtgatg gagtactgct
      601 ccagcgggag ccttctgagt gcgctggaga gccctgagaa cgcctttggg ctgcccgagg
      661 acgagttcct ggtggtgctg cgctgtgtgg tggccggcgt gaaccacctg cgggagaacg
      721 gcatcgtcca ccgggacatc aagcccggga atatcttgcg cctggtcggg gaggaggggc
      781 ggagcatcta caagctgacg gacttcgggg cagcccggga gctggatgac gacgagaagt
      841 tcgtctcggt ctacggcacc gaggagtacc tgcaccctga catgtatgag cgggcagtgc
      901 ttcgcaagcc ccaacagaaa gcttttgggg tggccgtgga tctctggagc attggggtga
      961 ccctgtacca tgcagccact ggcagcctgc ccttcgtccc ctttggaggg ccccgacgca
     1021 acaaggagat catgtaccgg atcaccacgg agaagccaac cggggccatt gcaggcactc
     1081 agaggctgga gaacgggccc ctggagtgga gctacaccct ccccatcacc tgtcagctgt
     1141 ccatggggct gcagagccag ctggtgccca tcctggccaa catcctggag gtggagcagg
     1201 ccaagtgctg gggcttcgac cagttctttg cggagaccag tgacatcctg cagcgagttg
     1261 tcgtccacgt cttctccttg ccgcaggctg tcgtgcacca cgtctacatc cacgcgcaca
     1321 acacgatagc catctttcta gaggccgtgt acaagcagac caacgtggcc ccccagcacc
     1381 aggagtacct ctttgagggt cacctctgtg tcctcgagcc cagcctctca gcacagcaca
     1441 tcgcccacac gacagcaagc agccccctga ccctgttcag catggtcagt gagaccccca
     1501 agggactggc cttcagggac cggtgtagaa ggcagatctg ggttctaatt ctgcatgcgc
     1561 ctctgaaatg ccatgtgact cgggctggtg gcctgcccaa cctgcttcac agcgtccaaa
     1621 gatctgggaa agaaactcca atggaaacag ggagatgtgg attcaatgtg gtctccacag
     1681 tctgtgctgc tctggacatc cccaagtttt tccccaaagt ggacctgcag gcagattaca
     1741 acacggccaa gggtgtgttg ggtgccggct accaggccct gcggctggca caggccttgc
     1801 tgacaggaca ggagctgatg cttcgggggc tgcactggtt cgtggagtca ctccaggcca
     1861 cgtgcaggcg gacgctggag gtcacgagga tggccctcct cttcctcagc agcagcctcg
     1921 gcactgagag gttcagcaac gtggctgggg tgcctgagat ccaggaactg aagagggccg
     1981 cagagctgag gtccaagctg cggaccttgg ctgaggtcct ctccagatgt tcccataata
     2041 tcacagagac caagatgacc ctaagcaacc tgagctctga gctgatgaag aaccgggatc
     2101 aggtacatgc ggacagaagc atccagcaga ttcagtgctg tttggacaag atgtatctca
     2161 tttacaaaca gttcaagaaa tccaggatga ggccagggct tggctacaac gaggagcaga
     2221 ttcacaagct ggataaggtg aattttagtc atttagccaa aaggctcctg caggtgttcc
     2281 aggaggagcg tgtgcagaag taccaggcat ccctggccac gcatggcaag agaatgaggg
     2341 tggtgcatga gaccaggaac cacctgcgcc tggtgggctg ctccgtggcc gcctgtaaca
     2401 cagaagccca gggagcccag gagagcctca gcaagatcct tgactggcta tctcaccagc
     2461 tcctgcagga cagaacaaag gaggctcagg cctcaccacc cactacagct ccttatccta
     2521 gccctgcact aaaggacctg gttttccaca tgcaagagct ctgcaaggag atgaaggtgc
     2581 tggcgtctga cctccaggac aacaaccgcg tcatcgaagg gttaagtagg gtcccatcgg
     2641 ctcctgacat ctgaactctg gggggtgcac gaggaatcct gaagcattag aatcgttcag
     2701 acactgctct cctgcctgca ctgggggacc caacacagga cgatacctgg tcacatctca
     2761 tcagcctacc tctctcccgc ctgacggcca ggagattttg ccagcattac cttccactgc
     2821 ctctcttcgg gaagcagcac agcaggacct ggggcaccag gccatctctg gatcctggcc
     2881 ccactgccca ggctgacctt tgaatcttac gtagactcag gtacagctcc tctgttgccc
     2941 tggcctgtat agctgaacct ggctgggctg tggggagaag aggctccgaa agcccctccc
     3001 tcccaccccc tctggtttat agggctttac tcctcaggga acagaagagg aggcctcctg
     3061 gggtcaaaca acctcatctc agtcttcctt cctcttaagg tgttctacat tgaacacaca
     3121 gccctctccc tgctcccacg atatctgagg gttaccacac gtggccccag gcatgacaga
     3181 gcccaagttc ccttctcctc tggtctggct gagcctaagg ctgagaaagc aggtggtcga
     3241 ggccggatgc cagtgtcttg gggacccttt cccctgtccc tctgaggcac caccaggttc
     3301 tggggtttgt agccagcagt ctcaacagta gccgtgccaa ttagcacagg cccgtaagtc
     3361 cagagccctg aggaaatcaa ggcctgcatc ttcaagaagt gaaataaact tgacattctt
     3421 ttctgtttga
//
LOCUS       XM_032611602            3422 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit epsilon (IKBKE), transcript variant X2, mRNA.
ACCESSION   XM_032611602
VERSION     XM_032611602.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3422
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3422
                     /gene="IKBKE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743242"
     CDS             333..2648
                     /gene="IKBKE"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit epsilon isoform X2"
                     /protein_id="XP_032467493.1"
                     /db_xref="GeneID:116743242"
                     /translation="MQSTVNYLWHTDDLLGQGATASVYKARNKKSGELVAVKVFNTAS
                     YLRPREVQVREFEVLRKLSHQNIIKFFAVEETGGSRQKVLVMEYCSSGSLLSALESPE
                     NAFGLPEDEFLVVLRCVVAGVNHLRENGIVHRDIKPGNILRLVGEEGRSIYKLTDFGA
                     ARELDDDEKFVSVYGTEEYLHPDMYERAVLRKPQQKAFGVAVDLWSIGVTLYHAATGS
                     LPFVPFGGPRRNKEIMYRITTEKPTGAIAGTQRLENGPLEWSYTLPITCQLSMGLQSQ
                     LVPILANILEVEQAKCWGFDQFFAETSDILQRVVVHVFSLPQAVVHHVYIHAHNTIAI
                     FLEAVYKQTNVAPQHQEYLFEGHLCVLEPSLSAQHIAHTTASSPLTLFSMVSETPKGL
                     AFRDRCRRQIWVLILHAPLKCHVTRAGGLPNLLHSVQRSGKETPMETGRCGFNVVSTV
                     CAALDIPKFFPKVDLQADYNTAKGVLGAGYQALRLAQALLTGQELMLRGLHWFVESLQ
                     ATCRRTLEVTRMALLFLSSSLGTESNVAGVPEIQELKRAAELRSKLRTLAEVLSRCSH
                     NITETKMTLSNLSSELMKNRDQVHADRSIQQIQCCLDKMYLIYKQFKKSRMRPGLGYN
                     EEQIHKLDKVNFSHLAKRLLQVFQEERVQKYQASLATHGKRMRVVHETRNHLRLVGCS
                     VAACNTEAQGAQESLSKILDWLSHQLLQDRTKEAQASPPTTAPYPSPALKDLVFHMQE
                     LCKEMKVLASDLQDNNRVIEGLSRVPSAPDI"
     misc_feature    375..1322
                     /gene="IKBKE"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(375..386,393..395,399..401,438..440,444..446,
                     534..536,588..599,735..737,747..752,756..758,798..803)
                     /gene="IKBKE"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
     misc_feature    1254..1481
                     /gene="IKBKE"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinase subunit epsilon (IKK-E);
                     Region: Ubl_IKKE; cd17128"
                     /db_xref="CDD:340648"
     misc_feature    order(1278..1280,1389..1391,1476..1478)
                     /gene="IKBKE"
                     /note="putative hydrophobic patch [polypeptide binding];
                     other site"
                     /db_xref="CDD:340648"
     misc_feature    1701..2435
                     /gene="IKBKE"
                     /note="TANK-binding kinase 1 coiled-coil domain 1; Region:
                     TBK1_CCD1; pfam18394"
                     /db_xref="CDD:465742"
     misc_feature    2502..2642
                     /gene="IKBKE"
                     /note="C-terminal domain of non-canonical Inhibitor of
                     kappa B kinases, IKK-E and TBK1, and similar proteins;
                     Region: TBK1_IKKE-like_C; cl41735"
                     /db_xref="CDD:425366"
     misc_feature    order(2520..2525,2529..2537,2541..2546,2553..2558,
                     2562..2567,2574..2579,2583..2588,2595..2600,2604..2609,
                     2613..2621,2625..2633)
                     /gene="IKBKE"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409261"
ORIGIN      
        1 gccggcaggg agctgagctg agtgttggcc tttgctccca gttctcccag ctcccagggt
       61 ggcacgcggc cacttcaact ggcccatctt caggttccca gggcccgtgg ccaccaggat
      121 gctatgggcg ctgcccatga atgacaacaa gccctgaaag ctcggggggc gtcacgcagt
      181 cccacaagcc tgcatgcccc acagccgaga tgggctcagc tcctggactt gccacagaca
      241 gaaaacataa cacacacttg ctggggagag tctttgcctg atccggggct gctcagagca
      301 caggaaggtg gccggccagc tgggagcaag agatgcagag taccgtcaat tacctgtggc
      361 acacggatga cctgctgggt cagggggcca ctgccagtgt gtacaaggcc cgaaacaaga
      421 aatccgggga gctggttgct gtgaaggtct tcaacacggc cagctacctg cgaccccgcg
      481 aggtgcaggt gagggagttt gaggtcctgc ggaagctgag ccaccagaac atcatcaagt
      541 tctttgcggt ggaggagacg gggggcagcc ggcagaaggt gctggtgatg gagtactgct
      601 ccagcgggag ccttctgagt gcgctggaga gccctgagaa cgcctttggg ctgcccgagg
      661 acgagttcct ggtggtgctg cgctgtgtgg tggccggcgt gaaccacctg cgggagaacg
      721 gcatcgtcca ccgggacatc aagcccggga atatcttgcg cctggtcggg gaggaggggc
      781 ggagcatcta caagctgacg gacttcgggg cagcccggga gctggatgac gacgagaagt
      841 tcgtctcggt ctacggcacc gaggagtacc tgcaccctga catgtatgag cgggcagtgc
      901 ttcgcaagcc ccaacagaaa gcttttgggg tggccgtgga tctctggagc attggggtga
      961 ccctgtacca tgcagccact ggcagcctgc ccttcgtccc ctttggaggg ccccgacgca
     1021 acaaggagat catgtaccgg atcaccacgg agaagccaac cggggccatt gcaggcactc
     1081 agaggctgga gaacgggccc ctggagtgga gctacaccct ccccatcacc tgtcagctgt
     1141 ccatggggct gcagagccag ctggtgccca tcctggccaa catcctggag gtggagcagg
     1201 ccaagtgctg gggcttcgac cagttctttg cggagaccag tgacatcctg cagcgagttg
     1261 tcgtccacgt cttctccttg ccgcaggctg tcgtgcacca cgtctacatc cacgcgcaca
     1321 acacgatagc catctttcta gaggccgtgt acaagcagac caacgtggcc ccccagcacc
     1381 aggagtacct ctttgagggt cacctctgtg tcctcgagcc cagcctctca gcacagcaca
     1441 tcgcccacac gacagcaagc agccccctga ccctgttcag catggtcagt gagaccccca
     1501 agggactggc cttcagggac cggtgtagaa ggcagatctg ggttctaatt ctgcatgcgc
     1561 ctctgaaatg ccatgtgact cgggctggtg gcctgcccaa cctgcttcac agcgtccaaa
     1621 gatctgggaa agaaactcca atggaaacag ggagatgtgg attcaatgtg gtctccacag
     1681 tctgtgctgc tctggacatc cccaagtttt tccccaaagt ggacctgcag gcagattaca
     1741 acacggccaa gggtgtgttg ggtgccggct accaggccct gcggctggca caggccttgc
     1801 tgacaggaca ggagctgatg cttcgggggc tgcactggtt cgtggagtca ctccaggcca
     1861 cgtgcaggcg gacgctggag gtcacgagga tggccctcct cttcctcagc agcagcctcg
     1921 gcactgagag caacgtggct ggggtgcctg agatccagga actgaagagg gccgcagagc
     1981 tgaggtccaa gctgcggacc ttggctgagg tcctctccag atgttcccat aatatcacag
     2041 agaccaagat gaccctaagc aacctgagct ctgagctgat gaagaaccgg gatcaggtac
     2101 atgcggacag aagcatccag cagattcagt gctgtttgga caagatgtat ctcatttaca
     2161 aacagttcaa gaaatccagg atgaggccag ggcttggcta caacgaggag cagattcaca
     2221 agctggataa ggtgaatttt agtcatttag ccaaaaggct cctgcaggtg ttccaggagg
     2281 agcgtgtgca gaagtaccag gcatccctgg ccacgcatgg caagagaatg agggtggtgc
     2341 atgagaccag gaaccacctg cgcctggtgg gctgctccgt ggccgcctgt aacacagaag
     2401 cccagggagc ccaggagagc ctcagcaaga tccttgactg gctatctcac cagctcctgc
     2461 aggacagaac aaaggaggct caggcctcac cacccactac agctccttat cctagccctg
     2521 cactaaagga cctggttttc cacatgcaag agctctgcaa ggagatgaag gtgctggcgt
     2581 ctgacctcca ggacaacaac cgcgtcatcg aagggttaag tagggtccca tcggctcctg
     2641 acatctgaac tctggggggt gcacgaggaa tcctgaagca ttagaatcgt tcagacactg
     2701 ctctcctgcc tgcactgggg gacccaacac aggacgatac ctggtcacat ctcatcagcc
     2761 tacctctctc ccgcctgacg gccaggagat tttgccagca ttaccttcca ctgcctctct
     2821 tcgggaagca gcacagcagg acctggggca ccaggccatc tctggatcct ggccccactg
     2881 cccaggctga cctttgaatc ttacgtagac tcaggtacag ctcctctgtt gccctggcct
     2941 gtatagctga acctggctgg gctgtgggga gaagaggctc cgaaagcccc tccctcccac
     3001 cccctctggt ttatagggct ttactcctca gggaacagaa gaggaggcct cctggggtca
     3061 aacaacctca tctcagtctt ccttcctctt aaggtgttct acattgaaca cacagccctc
     3121 tccctgctcc cacgatatct gagggttacc acacgtggcc ccaggcatga cagagcccaa
     3181 gttcccttct cctctggtct ggctgagcct aaggctgaga aagcaggtgg tcgaggccgg
     3241 atgccagtgt cttggggacc ctttcccctg tccctctgag gcaccaccag gttctggggt
     3301 ttgtagccag cagtctcaac agtagccgtg ccaattagca caggcccgta agtccagagc
     3361 cctgaggaaa tcaaggcctg catcttcaag aagtgaaata aacttgacat tcttttctgt
     3421 tt
//
LOCUS       XM_032611609            3356 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit epsilon (IKBKE), transcript variant X3, mRNA.
ACCESSION   XM_032611609
VERSION     XM_032611609.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3356
                     /gene="IKBKE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743242"
     CDS             333..2582
                     /gene="IKBKE"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit epsilon isoform X3"
                     /protein_id="XP_032467500.1"
                     /db_xref="GeneID:116743242"
                     /translation="MQSTVNYLWHTDDLLGQGATASVYKARNKKSGELVAVKVFNTAS
                     YLRPREVQGGSRQKVLVMEYCSSGSLLSALESPENAFGLPEDEFLVVLRCVVAGVNHL
                     RENGIVHRDIKPGNILRLVGEEGRSIYKLTDFGAARELDDDEKFVSVYGTEEYLHPDM
                     YERAVLRKPQQKAFGVAVDLWSIGVTLYHAATGSLPFVPFGGPRRNKEIMYRITTEKP
                     TGAIAGTQRLENGPLEWSYTLPITCQLSMGLQSQLVPILANILEVEQAKCWGFDQFFA
                     ETSDILQRVVVHVFSLPQAVVHHVYIHAHNTIAIFLEAVYKQTNVAPQHQEYLFEGHL
                     CVLEPSLSAQHIAHTTASSPLTLFSMVSETPKGLAFRDRCRRQIWVLILHAPLKCHVT
                     RAGGLPNLLHSVQRSGKETPMETGRCGFNVVSTVCAALDIPKFFPKVDLQADYNTAKG
                     VLGAGYQALRLAQALLTGQELMLRGLHWFVESLQATCRRTLEVTRMALLFLSSSLGTE
                     RFSNVAGVPEIQELKRAAELRSKLRTLAEVLSRCSHNITETKMTLSNLSSELMKNRDQ
                     VHADRSIQQIQCCLDKMYLIYKQFKKSRMRPGLGYNEEQIHKLDKVNFSHLAKRLLQV
                     FQEERVQKYQASLATHGKRMRVVHETRNHLRLVGCSVAACNTEAQGAQESLSKILDWL
                     SHQLLQDRTKEAQASPPTTAPYPSPALKDLVFHMQELCKEMKVLASDLQDNNRVIEGL
                     SRVPSAPDI"
     misc_feature    375..1250
                     /gene="IKBKE"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(375..386,393..395,399..401,438..440,444..446,
                     516..527,663..665,675..680,684..686,726..731)
                     /gene="IKBKE"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
     misc_feature    1182..1409
                     /gene="IKBKE"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinase subunit epsilon (IKK-E);
                     Region: Ubl_IKKE; cd17128"
                     /db_xref="CDD:340648"
     misc_feature    order(1206..1208,1317..1319,1404..1406)
                     /gene="IKBKE"
                     /note="putative hydrophobic patch [polypeptide binding];
                     other site"
                     /db_xref="CDD:340648"
     misc_feature    1629..2369
                     /gene="IKBKE"
                     /note="TANK-binding kinase 1 coiled-coil domain 1; Region:
                     TBK1_CCD1; pfam18394"
                     /db_xref="CDD:465742"
     misc_feature    2436..2576
                     /gene="IKBKE"
                     /note="C-terminal domain of non-canonical Inhibitor of
                     kappa B kinases, IKK-E and TBK1, and similar proteins;
                     Region: TBK1_IKKE-like_C; cl41735"
                     /db_xref="CDD:425366"
     misc_feature    order(2454..2459,2463..2471,2475..2480,2487..2492,
                     2496..2501,2508..2513,2517..2522,2529..2534,2538..2543,
                     2547..2555,2559..2567)
                     /gene="IKBKE"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409261"
ORIGIN      
        1 gccggcaggg agctgagctg agtgttggcc tttgctccca gttctcccag ctcccagggt
       61 ggcacgcggc cacttcaact ggcccatctt caggttccca gggcccgtgg ccaccaggat
      121 gctatgggcg ctgcccatga atgacaacaa gccctgaaag ctcggggggc gtcacgcagt
      181 cccacaagcc tgcatgcccc acagccgaga tgggctcagc tcctggactt gccacagaca
      241 gaaaacataa cacacacttg ctggggagag tctttgcctg atccggggct gctcagagca
      301 caggaaggtg gccggccagc tgggagcaag agatgcagag taccgtcaat tacctgtggc
      361 acacggatga cctgctgggt cagggggcca ctgccagtgt gtacaaggcc cgaaacaaga
      421 aatccgggga gctggttgct gtgaaggtct tcaacacggc cagctacctg cgaccccgcg
      481 aggtgcaggg gggcagccgg cagaaggtgc tggtgatgga gtactgctcc agcgggagcc
      541 ttctgagtgc gctggagagc cctgagaacg cctttgggct gcccgaggac gagttcctgg
      601 tggtgctgcg ctgtgtggtg gccggcgtga accacctgcg ggagaacggc atcgtccacc
      661 gggacatcaa gcccgggaat atcttgcgcc tggtcgggga ggaggggcgg agcatctaca
      721 agctgacgga cttcggggca gcccgggagc tggatgacga cgagaagttc gtctcggtct
      781 acggcaccga ggagtacctg caccctgaca tgtatgagcg ggcagtgctt cgcaagcccc
      841 aacagaaagc ttttggggtg gccgtggatc tctggagcat tggggtgacc ctgtaccatg
      901 cagccactgg cagcctgccc ttcgtcccct ttggagggcc ccgacgcaac aaggagatca
      961 tgtaccggat caccacggag aagccaaccg gggccattgc aggcactcag aggctggaga
     1021 acgggcccct ggagtggagc tacaccctcc ccatcacctg tcagctgtcc atggggctgc
     1081 agagccagct ggtgcccatc ctggccaaca tcctggaggt ggagcaggcc aagtgctggg
     1141 gcttcgacca gttctttgcg gagaccagtg acatcctgca gcgagttgtc gtccacgtct
     1201 tctccttgcc gcaggctgtc gtgcaccacg tctacatcca cgcgcacaac acgatagcca
     1261 tctttctaga ggccgtgtac aagcagacca acgtggcccc ccagcaccag gagtacctct
     1321 ttgagggtca cctctgtgtc ctcgagccca gcctctcagc acagcacatc gcccacacga
     1381 cagcaagcag ccccctgacc ctgttcagca tggtcagtga gacccccaag ggactggcct
     1441 tcagggaccg gtgtagaagg cagatctggg ttctaattct gcatgcgcct ctgaaatgcc
     1501 atgtgactcg ggctggtggc ctgcccaacc tgcttcacag cgtccaaaga tctgggaaag
     1561 aaactccaat ggaaacaggg agatgtggat tcaatgtggt ctccacagtc tgtgctgctc
     1621 tggacatccc caagtttttc cccaaagtgg acctgcaggc agattacaac acggccaagg
     1681 gtgtgttggg tgccggctac caggccctgc ggctggcaca ggccttgctg acaggacagg
     1741 agctgatgct tcgggggctg cactggttcg tggagtcact ccaggccacg tgcaggcgga
     1801 cgctggaggt cacgaggatg gccctcctct tcctcagcag cagcctcggc actgagaggt
     1861 tcagcaacgt ggctggggtg cctgagatcc aggaactgaa gagggccgca gagctgaggt
     1921 ccaagctgcg gaccttggct gaggtcctct ccagatgttc ccataatatc acagagacca
     1981 agatgaccct aagcaacctg agctctgagc tgatgaagaa ccgggatcag gtacatgcgg
     2041 acagaagcat ccagcagatt cagtgctgtt tggacaagat gtatctcatt tacaaacagt
     2101 tcaagaaatc caggatgagg ccagggcttg gctacaacga ggagcagatt cacaagctgg
     2161 ataaggtgaa ttttagtcat ttagccaaaa ggctcctgca ggtgttccag gaggagcgtg
     2221 tgcagaagta ccaggcatcc ctggccacgc atggcaagag aatgagggtg gtgcatgaga
     2281 ccaggaacca cctgcgcctg gtgggctgct ccgtggccgc ctgtaacaca gaagcccagg
     2341 gagcccagga gagcctcagc aagatccttg actggctatc tcaccagctc ctgcaggaca
     2401 gaacaaagga ggctcaggcc tcaccaccca ctacagctcc ttatcctagc cctgcactaa
     2461 aggacctggt tttccacatg caagagctct gcaaggagat gaaggtgctg gcgtctgacc
     2521 tccaggacaa caaccgcgtc atcgaagggt taagtagggt cccatcggct cctgacatct
     2581 gaactctggg gggtgcacga ggaatcctga agcattagaa tcgttcagac actgctctcc
     2641 tgcctgcact gggggaccca acacaggacg atacctggtc acatctcatc agcctacctc
     2701 tctcccgcct gacggccagg agattttgcc agcattacct tccactgcct ctcttcggga
     2761 agcagcacag caggacctgg ggcaccaggc catctctgga tcctggcccc actgcccagg
     2821 ctgacctttg aatcttacgt agactcaggt acagctcctc tgttgccctg gcctgtatag
     2881 ctgaacctgg ctgggctgtg gggagaagag gctccgaaag cccctccctc ccaccccctc
     2941 tggtttatag ggctttactc ctcagggaac agaagaggag gcctcctggg gtcaaacaac
     3001 ctcatctcag tcttccttcc tcttaaggtg ttctacattg aacacacagc cctctccctg
     3061 ctcccacgat atctgagggt taccacacgt ggccccaggc atgacagagc ccaagttccc
     3121 ttctcctctg gtctggctga gcctaaggct gagaaagcag gtggtcgagg ccggatgcca
     3181 gtgtcttggg gaccctttcc cctgtccctc tgaggcacca ccaggttctg gggtttgtag
     3241 ccagcagtct caacagtagc cgtgccaatt agcacaggcc cgtaagtcca gagccctgag
     3301 gaaatcaagg cctgcatctt caagaagtga aataaacttg acattctttt ctgttt
//
LOCUS       XM_032611615            3278 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit epsilon (IKBKE), transcript variant X4, mRNA.
ACCESSION   XM_032611615
VERSION     XM_032611615.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3278
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3278
                     /gene="IKBKE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743242"
     CDS             353..2509
                     /gene="IKBKE"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit epsilon isoform X4"
                     /protein_id="XP_032467506.1"
                     /db_xref="GeneID:116743242"
                     /translation="MQSTVNYLWHTDDLLGQGATASVYKARNKKSGELVAVKVFNTAS
                     YLRPREVQVREFEVLRKLSHQNIIKFFAVEETGGSRQKVLVMEYCSSGSLLSALESPE
                     NAFGLPEDEFLVVLRCVVAGVNHLRENGIVHRDIKPGNILRLVGEEGRSIYKLTDFGA
                     ARELDDDEKFVSVYGTEEYLHPDMYERAVLRKPQQKAFGVAVDLWSIGVTLYHAATGS
                     LPFVPFGGPRRNKEIMYRITTEKPTGAIAGTQRLENGPLEWSYTLPITCQLSMGLQSQ
                     LVPILANILEVEQAKCWGFDQFFAETSDILQRVVVHVFSLPQAVVHHVYIHAHNTIAI
                     FLEAVYKQTNVAPQHQEYLFEGHLCVLEPSLSAQHIAHTTASSPLTLFSMVSETPKGL
                     AFRDPALDIPKFFPKVDLQADYNTAKGVLGAGYQALRLAQALLTGQELMLRGLHWFVE
                     SLQATCRRTLEVTRMALLFLSSSLGTERFSNVAGVPEIQELKRAAELRSKLRTLAEVL
                     SRCSHNITETKMTLSNLSSELMKNRDQVHADRSIQQIQCCLDKMYLIYKQFKKSRMRP
                     GLGYNEEQIHKLDKVNFSHLAKRLLQVFQEERVQKYQASLATHGKRMRVVHETRNHLR
                     LVGCSVAACNTEAQGAQESLSKILDWLSHQLLQDRTKEAQASPPTTAPYPSPALKDLV
                     FHMQELCKEMKVLASDLQDNNRVIEGLSRVPSAPDI"
     misc_feature    395..1342
                     /gene="IKBKE"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(395..406,413..415,419..421,458..460,464..466,
                     554..556,608..619,755..757,767..772,776..778,818..823)
                     /gene="IKBKE"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270890"
     misc_feature    1274..1501
                     /gene="IKBKE"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinase subunit epsilon (IKK-E);
                     Region: Ubl_IKKE; cd17128"
                     /db_xref="CDD:340648"
     misc_feature    order(1298..1300,1409..1411,1496..1498)
                     /gene="IKBKE"
                     /note="putative hydrophobic patch [polypeptide binding];
                     other site"
                     /db_xref="CDD:340648"
     misc_feature    1556..2296
                     /gene="IKBKE"
                     /note="TANK-binding kinase 1 coiled-coil domain 1; Region:
                     TBK1_CCD1; pfam18394"
                     /db_xref="CDD:465742"
     misc_feature    2363..2503
                     /gene="IKBKE"
                     /note="C-terminal domain of non-canonical Inhibitor of
                     kappa B kinases, IKK-E and TBK1, and similar proteins;
                     Region: TBK1_IKKE-like_C; cl41735"
                     /db_xref="CDD:425366"
     misc_feature    order(2381..2386,2390..2398,2402..2407,2414..2419,
                     2423..2428,2435..2440,2444..2449,2456..2461,2465..2470,
                     2474..2482,2486..2494)
                     /gene="IKBKE"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409261"
ORIGIN      
        1 aggaagtgag agaactgaga gccggcaggg agctgagctg agtgttggcc tttgctccca
       61 gttctcccag ctcccagggt ggcacgcggc cacttcaact ggcccatctt caggttccca
      121 gggcccgtgg ccaccaggat gctatgggcg ctgcccatga atgacaacaa gccctgaaag
      181 ctcggggggc gtcacgcagt cccacaagcc tgcatgcccc acagccgaga tgggctcagc
      241 tcctggactt gccacagaca gaaaacataa cacacacttg ctggggagag tctttgcctg
      301 atccggggct gctcagagca caggaaggtg gccggccagc tgggagcaag agatgcagag
      361 taccgtcaat tacctgtggc acacggatga cctgctgggt cagggggcca ctgccagtgt
      421 gtacaaggcc cgaaacaaga aatccgggga gctggttgct gtgaaggtct tcaacacggc
      481 cagctacctg cgaccccgcg aggtgcaggt gagggagttt gaggtcctgc ggaagctgag
      541 ccaccagaac atcatcaagt tctttgcggt ggaggagacg gggggcagcc ggcagaaggt
      601 gctggtgatg gagtactgct ccagcgggag ccttctgagt gcgctggaga gccctgagaa
      661 cgcctttggg ctgcccgagg acgagttcct ggtggtgctg cgctgtgtgg tggccggcgt
      721 gaaccacctg cgggagaacg gcatcgtcca ccgggacatc aagcccggga atatcttgcg
      781 cctggtcggg gaggaggggc ggagcatcta caagctgacg gacttcgggg cagcccggga
      841 gctggatgac gacgagaagt tcgtctcggt ctacggcacc gaggagtacc tgcaccctga
      901 catgtatgag cgggcagtgc ttcgcaagcc ccaacagaaa gcttttgggg tggccgtgga
      961 tctctggagc attggggtga ccctgtacca tgcagccact ggcagcctgc ccttcgtccc
     1021 ctttggaggg ccccgacgca acaaggagat catgtaccgg atcaccacgg agaagccaac
     1081 cggggccatt gcaggcactc agaggctgga gaacgggccc ctggagtgga gctacaccct
     1141 ccccatcacc tgtcagctgt ccatggggct gcagagccag ctggtgccca tcctggccaa
     1201 catcctggag gtggagcagg ccaagtgctg gggcttcgac cagttctttg cggagaccag
     1261 tgacatcctg cagcgagttg tcgtccacgt cttctccttg ccgcaggctg tcgtgcacca
     1321 cgtctacatc cacgcgcaca acacgatagc catctttcta gaggccgtgt acaagcagac
     1381 caacgtggcc ccccagcacc aggagtacct ctttgagggt cacctctgtg tcctcgagcc
     1441 cagcctctca gcacagcaca tcgcccacac gacagcaagc agccccctga ccctgttcag
     1501 catggtcagt gagaccccca agggactggc cttcagggac cctgctctgg acatccccaa
     1561 gtttttcccc aaagtggacc tgcaggcaga ttacaacacg gccaagggtg tgttgggtgc
     1621 cggctaccag gccctgcggc tggcacaggc cttgctgaca ggacaggagc tgatgcttcg
     1681 ggggctgcac tggttcgtgg agtcactcca ggccacgtgc aggcggacgc tggaggtcac
     1741 gaggatggcc ctcctcttcc tcagcagcag cctcggcact gagaggttca gcaacgtggc
     1801 tggggtgcct gagatccagg aactgaagag ggccgcagag ctgaggtcca agctgcggac
     1861 cttggctgag gtcctctcca gatgttccca taatatcaca gagaccaaga tgaccctaag
     1921 caacctgagc tctgagctga tgaagaaccg ggatcaggta catgcggaca gaagcatcca
     1981 gcagattcag tgctgtttgg acaagatgta tctcatttac aaacagttca agaaatccag
     2041 gatgaggcca gggcttggct acaacgagga gcagattcac aagctggata aggtgaattt
     2101 tagtcattta gccaaaaggc tcctgcaggt gttccaggag gagcgtgtgc agaagtacca
     2161 ggcatccctg gccacgcatg gcaagagaat gagggtggtg catgagacca ggaaccacct
     2221 gcgcctggtg ggctgctccg tggccgcctg taacacagaa gcccagggag cccaggagag
     2281 cctcagcaag atccttgact ggctatctca ccagctcctg caggacagaa caaaggaggc
     2341 tcaggcctca ccacccacta cagctcctta tcctagccct gcactaaagg acctggtttt
     2401 ccacatgcaa gagctctgca aggagatgaa ggtgctggcg tctgacctcc aggacaacaa
     2461 ccgcgtcatc gaagggttaa gtagggtccc atcggctcct gacatctgaa ctctgggggg
     2521 tgcacgagga atcctgaagc attagaatcg ttcagacact gctctcctgc ctgcactggg
     2581 ggacccaaca caggacgata cctggtcaca tctcatcagc ctacctctct cccgcctgac
     2641 ggccaggaga ttttgccagc attaccttcc actgcctctc ttcgggaagc agcacagcag
     2701 gacctggggc accaggccat ctctggatcc tggccccact gcccaggctg acctttgaat
     2761 cttacgtaga ctcaggtaca gctcctctgt tgccctggcc tgtatagctg aacctggctg
     2821 ggctgtgggg agaagaggct ccgaaagccc ctccctccca ccccctctgg tttatagggc
     2881 tttactcctc agggaacaga agaggaggcc tcctggggtc aaacaacctc atctcagtct
     2941 tccttcctct taaggtgttc tacattgaac acacagccct ctccctgctc ccacgatatc
     3001 tgagggttac cacacgtggc cccaggcatg acagagccca agttcccttc tcctctggtc
     3061 tggctgagcc taaggctgag aaagcaggtg gtcgaggccg gatgccagtg tcttggggac
     3121 cctttcccct gtccctctga ggcaccacca ggttctgggg tttgtagcca gcagtctcaa
     3181 cagtagccgt gccaattagc acaggcccgt aagtccagag ccctgaggaa atcaaggcct
     3241 gcatcttcaa gaagtgaaat aaacttgaca ttcttttc
//
LOCUS       XM_032611621            3257 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit epsilon (IKBKE), transcript variant X5, mRNA.
ACCESSION   XM_032611621
VERSION     XM_032611621.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3257
                     /gene="IKBKE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743242"
     CDS             333..2483
                     /gene="IKBKE"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit epsilon isoform X5"
                     /protein_id="XP_032467512.1"
                     /db_xref="GeneID:116743242"
                     /translation="MQSTVNYLWHTDDLLGQGATASVYKARNKKSGELVAVKVFNTAS
                     YLRPREVQVREFEVLRKLSHQNIIKFFAVEETGGSRQKVLVMEYCSSGSLLSALESPE
                     NAFGLPEDEFLVVLRCVVAGVNHLRENGIVHRDIKPGNILRLVGEEGRSIYKLTDFGA
                     ARELDDDEKFVSVYGTEEYLHPDMYERAVLRKPQQKAFGVAVDLWSIGVTLYHAATGS
                     LPFVPFGGPRRNKEIMYRITTEKPTGAIAGTQRLENGPLEWSYTLPITCQLSMGLQSQ
                     LVPILANILEVEQAKCWGFDQFFAETSDILQRVVVHVFSLPQAVVHHVYIHAHNTIAI
                     FLEAVYKQTNVAPQHQEYLFEGHLCVLEPSLSAQHIAHTTASSPLTLFSMVSETPKGL
                     AFRDPALDIPKFFPKVDLQADYNTAKGVLGAGYQALRLAQALLTGQELMLRGLHWFVE
                     SLQATCRRTLEVTRMALLFLSSSLGTESNVAGVPEIQELKRAAELRSKLRTLAEVLSR
                     CSHNITETKMTLSNLSSELMKNRDQVHADRSIQQIQCCLDKMYLIYKQFKKSRMRPGL
                     GYNEEQIHKLDKVNFSHLAKRLLQVFQEERVQKYQASLATHGKRMRVVHETRNHLRLV
                     GCSVAACNTEAQGAQESLSKILDWLSHQLLQDRTKEAQASPPTTAPYPSPALKDLVFH
                     MQELCKEMKVLASDLQDNNRVIEGLSRVPSAPDI"
     misc_feature    375..1322
                     /gene="IKBKE"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(375..386,393..395,399..401,438..440,444..446,
                     534..536,588..599,735..737,747..752,756..758,798..803)
                     /gene="IKBKE"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
     misc_feature    1254..1481
                     /gene="IKBKE"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinase subunit epsilon (IKK-E);
                     Region: Ubl_IKKE; cd17128"
                     /db_xref="CDD:340648"
     misc_feature    order(1278..1280,1389..1391,1476..1478)
                     /gene="IKBKE"
                     /note="putative hydrophobic patch [polypeptide binding];
                     other site"
                     /db_xref="CDD:340648"
     misc_feature    1536..2270
                     /gene="IKBKE"
                     /note="TANK-binding kinase 1 coiled-coil domain 1; Region:
                     TBK1_CCD1; pfam18394"
                     /db_xref="CDD:465742"
     misc_feature    2337..2477
                     /gene="IKBKE"
                     /note="C-terminal domain of non-canonical Inhibitor of
                     kappa B kinases, IKK-E and TBK1, and similar proteins;
                     Region: TBK1_IKKE-like_C; cl41735"
                     /db_xref="CDD:425366"
     misc_feature    order(2355..2360,2364..2372,2376..2381,2388..2393,
                     2397..2402,2409..2414,2418..2423,2430..2435,2439..2444,
                     2448..2456,2460..2468)
                     /gene="IKBKE"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409261"
ORIGIN      
        1 gccggcaggg agctgagctg agtgttggcc tttgctccca gttctcccag ctcccagggt
       61 ggcacgcggc cacttcaact ggcccatctt caggttccca gggcccgtgg ccaccaggat
      121 gctatgggcg ctgcccatga atgacaacaa gccctgaaag ctcggggggc gtcacgcagt
      181 cccacaagcc tgcatgcccc acagccgaga tgggctcagc tcctggactt gccacagaca
      241 gaaaacataa cacacacttg ctggggagag tctttgcctg atccggggct gctcagagca
      301 caggaaggtg gccggccagc tgggagcaag agatgcagag taccgtcaat tacctgtggc
      361 acacggatga cctgctgggt cagggggcca ctgccagtgt gtacaaggcc cgaaacaaga
      421 aatccgggga gctggttgct gtgaaggtct tcaacacggc cagctacctg cgaccccgcg
      481 aggtgcaggt gagggagttt gaggtcctgc ggaagctgag ccaccagaac atcatcaagt
      541 tctttgcggt ggaggagacg gggggcagcc ggcagaaggt gctggtgatg gagtactgct
      601 ccagcgggag ccttctgagt gcgctggaga gccctgagaa cgcctttggg ctgcccgagg
      661 acgagttcct ggtggtgctg cgctgtgtgg tggccggcgt gaaccacctg cgggagaacg
      721 gcatcgtcca ccgggacatc aagcccggga atatcttgcg cctggtcggg gaggaggggc
      781 ggagcatcta caagctgacg gacttcgggg cagcccggga gctggatgac gacgagaagt
      841 tcgtctcggt ctacggcacc gaggagtacc tgcaccctga catgtatgag cgggcagtgc
      901 ttcgcaagcc ccaacagaaa gcttttgggg tggccgtgga tctctggagc attggggtga
      961 ccctgtacca tgcagccact ggcagcctgc ccttcgtccc ctttggaggg ccccgacgca
     1021 acaaggagat catgtaccgg atcaccacgg agaagccaac cggggccatt gcaggcactc
     1081 agaggctgga gaacgggccc ctggagtgga gctacaccct ccccatcacc tgtcagctgt
     1141 ccatggggct gcagagccag ctggtgccca tcctggccaa catcctggag gtggagcagg
     1201 ccaagtgctg gggcttcgac cagttctttg cggagaccag tgacatcctg cagcgagttg
     1261 tcgtccacgt cttctccttg ccgcaggctg tcgtgcacca cgtctacatc cacgcgcaca
     1321 acacgatagc catctttcta gaggccgtgt acaagcagac caacgtggcc ccccagcacc
     1381 aggagtacct ctttgagggt cacctctgtg tcctcgagcc cagcctctca gcacagcaca
     1441 tcgcccacac gacagcaagc agccccctga ccctgttcag catggtcagt gagaccccca
     1501 agggactggc cttcagggac cctgctctgg acatccccaa gtttttcccc aaagtggacc
     1561 tgcaggcaga ttacaacacg gccaagggtg tgttgggtgc cggctaccag gccctgcggc
     1621 tggcacaggc cttgctgaca ggacaggagc tgatgcttcg ggggctgcac tggttcgtgg
     1681 agtcactcca ggccacgtgc aggcggacgc tggaggtcac gaggatggcc ctcctcttcc
     1741 tcagcagcag cctcggcact gagagcaacg tggctggggt gcctgagatc caggaactga
     1801 agagggccgc agagctgagg tccaagctgc ggaccttggc tgaggtcctc tccagatgtt
     1861 cccataatat cacagagacc aagatgaccc taagcaacct gagctctgag ctgatgaaga
     1921 accgggatca ggtacatgcg gacagaagca tccagcagat tcagtgctgt ttggacaaga
     1981 tgtatctcat ttacaaacag ttcaagaaat ccaggatgag gccagggctt ggctacaacg
     2041 aggagcagat tcacaagctg gataaggtga attttagtca tttagccaaa aggctcctgc
     2101 aggtgttcca ggaggagcgt gtgcagaagt accaggcatc cctggccacg catggcaaga
     2161 gaatgagggt ggtgcatgag accaggaacc acctgcgcct ggtgggctgc tccgtggccg
     2221 cctgtaacac agaagcccag ggagcccagg agagcctcag caagatcctt gactggctat
     2281 ctcaccagct cctgcaggac agaacaaagg aggctcaggc ctcaccaccc actacagctc
     2341 cttatcctag ccctgcacta aaggacctgg ttttccacat gcaagagctc tgcaaggaga
     2401 tgaaggtgct ggcgtctgac ctccaggaca acaaccgcgt catcgaaggg ttaagtaggg
     2461 tcccatcggc tcctgacatc tgaactctgg ggggtgcacg aggaatcctg aagcattaga
     2521 atcgttcaga cactgctctc ctgcctgcac tgggggaccc aacacaggac gatacctggt
     2581 cacatctcat cagcctacct ctctcccgcc tgacggccag gagattttgc cagcattacc
     2641 ttccactgcc tctcttcggg aagcagcaca gcaggacctg gggcaccagg ccatctctgg
     2701 atcctggccc cactgcccag gctgaccttt gaatcttacg tagactcagg tacagctcct
     2761 ctgttgccct ggcctgtata gctgaacctg gctgggctgt ggggagaaga ggctccgaaa
     2821 gcccctccct cccaccccct ctggtttata gggctttact cctcagggaa cagaagagga
     2881 ggcctcctgg ggtcaaacaa cctcatctca gtcttccttc ctcttaaggt gttctacatt
     2941 gaacacacag ccctctccct gctcccacga tatctgaggg ttaccacacg tggccccagg
     3001 catgacagag cccaagttcc cttctcctct ggtctggctg agcctaaggc tgagaaagca
     3061 ggtggtcgag gccggatgcc agtgtcttgg ggaccctttc ccctgtccct ctgaggcacc
     3121 accaggttct ggggtttgta gccagcagtc tcaacagtag ccgtgccaat tagcacaggc
     3181 ccgtaagtcc agagccctga ggaaatcaag gcctgcatct tcaagaagtg aaataaactt
     3241 gacattcttt tctgttt
//
LOCUS       XM_032611629            3408 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit epsilon (IKBKE), transcript variant X6, mRNA.
ACCESSION   XM_032611629
VERSION     XM_032611629.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3408
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3408
                     /gene="IKBKE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743242"
     CDS             333..2417
                     /gene="IKBKE"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit epsilon isoform X6"
                     /protein_id="XP_032467520.1"
                     /db_xref="GeneID:116743242"
                     /translation="MQSTVNYLWHTDDLLGQGATASVYKARNKKSGELVAVKVFNTAS
                     YLRPREVQVREFEVLRKLSHQNIIKFFAVEETGGSRQKVLVMEYCSSGSLLSALESPE
                     NAFGLPEDEFLVVLRCVVAGVNHLRENGIVHRDIKPGNILRLVGEEGRSIYKLTDFGA
                     ARELDDDEKFVSVYGTEEYLHPDMYERAVLRKPQQKAFGVAVDLWSIGVTLYHAATGS
                     LPFVPFGGPRRNKEIMYRITTEKPTGAIAGTQRLENGPLEWSYTLPITCQLSMGLQSQ
                     LVPILANILEVEQAKCWGFDQFFAETSDILQRVVVHVFSLPQAVVHHVYIHAHNTIAI
                     FLEAVYKQTNVAPQHQEYLFEGHLCVLEPSLSAQHIAHTTASSPLTLFSMVSETPKGL
                     AFRDRCRRQIWVLILHAPLKCHVTRAGGLPNLLHSVQRSGKETPMETGRCGFNVVSTV
                     CAALDIPKFFPKVDLQADYNTAKGVLGAGYQALRLAQALLTGQELMLRGLHWFVESLQ
                     ATCRRTLEVTRMALLFLSSSLGTERFSNVAGVPEIQELKRAAELRSKLRTLAEVLSRC
                     SHNITETKMTLSNLSSELMKNRDQVHADRSIQQIQCCLDKMYLIYKQFKKSRMRPGLG
                     YNEEQIHKLDKVNFSHLAKRLLQVFQEERVQKYQASLATHGKRMSGYCHPISQMRKLR
                     LREQVASLIRHR"
     misc_feature    375..1322
                     /gene="IKBKE"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(375..386,393..395,399..401,438..440,444..446,
                     534..536,588..599,735..737,747..752,756..758,798..803)
                     /gene="IKBKE"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
     misc_feature    1254..1481
                     /gene="IKBKE"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinase subunit epsilon (IKK-E);
                     Region: Ubl_IKKE; cd17128"
                     /db_xref="CDD:340648"
     misc_feature    order(1278..1280,1389..1391,1476..1478)
                     /gene="IKBKE"
                     /note="putative hydrophobic patch [polypeptide binding];
                     other site"
                     /db_xref="CDD:340648"
     misc_feature    1701..2414
                     /gene="IKBKE"
                     /note="TANK-binding kinase 1 coiled-coil domain 1; Region:
                     TBK1_CCD1; pfam18394"
                     /db_xref="CDD:465742"
ORIGIN      
        1 gccggcaggg agctgagctg agtgttggcc tttgctccca gttctcccag ctcccagggt
       61 ggcacgcggc cacttcaact ggcccatctt caggttccca gggcccgtgg ccaccaggat
      121 gctatgggcg ctgcccatga atgacaacaa gccctgaaag ctcggggggc gtcacgcagt
      181 cccacaagcc tgcatgcccc acagccgaga tgggctcagc tcctggactt gccacagaca
      241 gaaaacataa cacacacttg ctggggagag tctttgcctg atccggggct gctcagagca
      301 caggaaggtg gccggccagc tgggagcaag agatgcagag taccgtcaat tacctgtggc
      361 acacggatga cctgctgggt cagggggcca ctgccagtgt gtacaaggcc cgaaacaaga
      421 aatccgggga gctggttgct gtgaaggtct tcaacacggc cagctacctg cgaccccgcg
      481 aggtgcaggt gagggagttt gaggtcctgc ggaagctgag ccaccagaac atcatcaagt
      541 tctttgcggt ggaggagacg gggggcagcc ggcagaaggt gctggtgatg gagtactgct
      601 ccagcgggag ccttctgagt gcgctggaga gccctgagaa cgcctttggg ctgcccgagg
      661 acgagttcct ggtggtgctg cgctgtgtgg tggccggcgt gaaccacctg cgggagaacg
      721 gcatcgtcca ccgggacatc aagcccggga atatcttgcg cctggtcggg gaggaggggc
      781 ggagcatcta caagctgacg gacttcgggg cagcccggga gctggatgac gacgagaagt
      841 tcgtctcggt ctacggcacc gaggagtacc tgcaccctga catgtatgag cgggcagtgc
      901 ttcgcaagcc ccaacagaaa gcttttgggg tggccgtgga tctctggagc attggggtga
      961 ccctgtacca tgcagccact ggcagcctgc ccttcgtccc ctttggaggg ccccgacgca
     1021 acaaggagat catgtaccgg atcaccacgg agaagccaac cggggccatt gcaggcactc
     1081 agaggctgga gaacgggccc ctggagtgga gctacaccct ccccatcacc tgtcagctgt
     1141 ccatggggct gcagagccag ctggtgccca tcctggccaa catcctggag gtggagcagg
     1201 ccaagtgctg gggcttcgac cagttctttg cggagaccag tgacatcctg cagcgagttg
     1261 tcgtccacgt cttctccttg ccgcaggctg tcgtgcacca cgtctacatc cacgcgcaca
     1321 acacgatagc catctttcta gaggccgtgt acaagcagac caacgtggcc ccccagcacc
     1381 aggagtacct ctttgagggt cacctctgtg tcctcgagcc cagcctctca gcacagcaca
     1441 tcgcccacac gacagcaagc agccccctga ccctgttcag catggtcagt gagaccccca
     1501 agggactggc cttcagggac cggtgtagaa ggcagatctg ggttctaatt ctgcatgcgc
     1561 ctctgaaatg ccatgtgact cgggctggtg gcctgcccaa cctgcttcac agcgtccaaa
     1621 gatctgggaa agaaactcca atggaaacag ggagatgtgg attcaatgtg gtctccacag
     1681 tctgtgctgc tctggacatc cccaagtttt tccccaaagt ggacctgcag gcagattaca
     1741 acacggccaa gggtgtgttg ggtgccggct accaggccct gcggctggca caggccttgc
     1801 tgacaggaca ggagctgatg cttcgggggc tgcactggtt cgtggagtca ctccaggcca
     1861 cgtgcaggcg gacgctggag gtcacgagga tggccctcct cttcctcagc agcagcctcg
     1921 gcactgagag gttcagcaac gtggctgggg tgcctgagat ccaggaactg aagagggccg
     1981 cagagctgag gtccaagctg cggaccttgg ctgaggtcct ctccagatgt tcccataata
     2041 tcacagagac caagatgacc ctaagcaacc tgagctctga gctgatgaag aaccgggatc
     2101 aggtacatgc ggacagaagc atccagcaga ttcagtgctg tttggacaag atgtatctca
     2161 tttacaaaca gttcaagaaa tccaggatga ggccagggct tggctacaac gaggagcaga
     2221 ttcacaagct ggataaggtg aattttagtc atttagccaa aaggctcctg caggtgttcc
     2281 aggaggagcg tgtgcagaag taccaggcat ccctggccac gcatggcaag agaatgagtg
     2341 gatactgtca ccccatttca cagatgagga aactgaggct cagagaacag gttgcttcct
     2401 taatacgaca ccgctagtaa atagcagacc caggactggc atatgggtat gactgcctct
     2461 aaaatctaga ttctttccat gtcccaggtg gttgtgttca gaagccccct ctctggggaa
     2521 aacacaagat ccctctggga tgaggacaag tggtctggga agcagggaca ggcagaggcc
     2581 cttatataga atcccccttg cacactgtcc cttataggag ttttggcttc tgcctctcag
     2641 acaagtgcct tccccttccc gtcctgagac aagaggacag tttcccaggt gctgctggtt
     2701 ctgtggccca cgtgacctgt gggcttatta tggggctgag actcaaacac tcacctaccc
     2761 cttacattaa aatactgttt cccatctccc caacccaagc caccccaaat tctgacttaa
     2821 attggtctgg agtagggttt ggatggcagt attgaaatgc tccttgcgtg attctaatgt
     2881 gtaaccagag ttgaggatcg accactggta gaacccctcc aggacttggt gtacgttctg
     2941 tgccatgggg cgatgttcct cctctctccc tccacttaga gagagaagag aattcataac
     3001 agagtcttga ctttgatctg ccctggaaat gggaacgtgg gcagttcccg ttttaagtgt
     3061 cccagtgcag gcggtccctg cctctccaga gcctgacccg ggcccttgct caccctcacc
     3121 ggcttatgtg gcccggcctg aggcaggtgt atttgcagct cccactgtgg ttccgccagg
     3181 accctcacta gccccggtca gagtgctcat cagcctcctt agctgggaca ggtgagggct
     3241 gagggcacag ctggaaaggc agaggcagcg agggaggcca gtgcctggca cccaccagat
     3301 ccagcctctg ccacctggaa agcctctcct ccgtgtctgt gtggtgaccg aactgctggg
     3361 tgggccccgg tgagagtgag tgggccgggc tctgacattt ctctgctc
//
LOCUS       XR_004346720            2361 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit epsilon (IKBKE), transcript variant X7, misc_RNA.
ACCESSION   XR_004346720
VERSION     XR_004346720.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2361
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2361
                     /gene="IKBKE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743242"
     misc_RNA        1..2361
                     /gene="IKBKE"
                     /product="inhibitor of nuclear factor kappa B kinase
                     subunit epsilon, transcript variant X7"
                     /db_xref="GeneID:116743242"
ORIGIN      
        1 gccggcaggg agctgagctg agtgttggcc tttgctccca gttctcccag ctcccagggt
       61 ggcacgcggc cacttcaact ggcccatctt caggttccca gggcccgtgg ccaccaggat
      121 gctatgggcg ctgcccatga atgacaacaa gccctgaaag ctcggggggc gtcacgcagt
      181 cccacaagcc tgcatgcccc acagccgaga tgggctcagc tcctggactt gccacagaca
      241 gaaaacataa cacacacttg ctggggagag tctttgcctg atccggggct gctcagagca
      301 caggaaggtg gccggccagc tgggagcaag agatgcagag taccgtcaat tacctgtggc
      361 acacggatga cctgctgggt cagggggcca ctgccagtgt gtacaaggcc cgaaacaaga
      421 aatccgggga gctggttgct gtgaaggtct tcaacacggc cagctacctg cgaccccgcg
      481 aggtgcaggt gagggagttt gaggtcctgc ggaagctgag ccaccagaac atcatcaagt
      541 tctttgcggt ggaggagacg gggggcagcc ggcagaaggt gctggtgatg gagtactgct
      601 ccagcgggag ccttctgagt gcgctggaga gccctgagaa cgcctttggg ctgcccgagg
      661 acgagttcct ggtggtgctg cgctgtgtgg tggccggcgt gaaccacctg cgggagaacg
      721 gcatcgtcca ccgggacatc aagcccggga atatcttgcg cctggtcggg gaggaggggc
      781 ggagcatcta caagctgacg gacttcgggg cagcccggga gctggatgac gacgagaagt
      841 tcgtctcggt ctacggcacc gaggagtacc tgcaccctga catgtatgag cgggcagtgc
      901 ttcgcaagcc ccaacagaaa gcttttgggg tggccgtgga tctctggagc attggggtga
      961 ccctgtacca tgcagccact ggcagcctgc ccttcgtccc ctttggaggg ccccgacgca
     1021 acaaggagat catgtaccgg atcaccacgg agaagccaac cggggccatt gcaggcactc
     1081 agaggctgga gaacgggccc ctggagtgga gctacaccct ccccatcacc tgtcagctgt
     1141 ccatggggct gcagagccag ctggtgccca tcctggccaa catcctggag gtggagcagg
     1201 ccaagtgctg gggcttcgac cagttctttg cggagaccag tgacatcctg cagcgagttg
     1261 tcgtccacgt cttctccttg ccgcaggctg tcgtgcacca cgtctacatc cacgcgcaca
     1321 acacgatagc catctttcta gaggccgtgt acaagcagac caacgtggcc ccccagcacc
     1381 aggagtacct ctttgagggt cacctctgtg tcctcgagcc cagcctctca gcacagcaca
     1441 tcgcccacac gacagcaagc agccccctga ccctgttcag catggtcagt gagaccccca
     1501 agggactggc cttcagggac cggtgtagaa ggcagatctg ggttctaatt ctgcatgcgc
     1561 ctctgaaatg ccatgtgact cgggctggtg gcctgcccaa cctgcttcac agcgtccaaa
     1621 gatctgggaa agaaactcca atggaaacag ggagatgtgg attcaatgtg gtctccacag
     1681 tctgtgctgc tctggacatc cccaagtttt tccccaaagt ggacctgcag gcagattaca
     1741 acacggccaa gggtgtgttg ggtgccggct accaggccct gcggctggca caggccttgc
     1801 tgacaggaca ggagctgatg cttcgggggc tgcactggtt cgtggagtca ctccaggcca
     1861 cgtgcaggcg gacgctggag gtcacgagga tggccctcct cttcctcagc agcagcctcg
     1921 gcactgagag gttcagcaac gtggctgggg tgcctgagat ccaggaactg aagagggccg
     1981 cagagctgag gtccaagctg cggaccttgg ctgaggtcct ctccagatgt tcccataata
     2041 tcacagagac caagatgacc ctaagcaacc tgagctctga gctgatgaag aaccgggatc
     2101 agcatccagc agattcagtg ctgtttggac aagatgtatc tcatttacaa acagttcaag
     2161 aaatccagga tgaggccagg gcttggctac aacgaggagc agattcacaa gctggataag
     2221 gtgaatttta gtcatttagc caaaaggctc ctgcaggtgt tccaggagga gcgtgtgcag
     2281 aagtaccagg catccctggc cacgcatggc aagagaatga gggtggtgca tgagaccagg
     2341 aaccacctgc gcctggtggg c
//
LOCUS       XR_004346721            2349 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit epsilon (IKBKE), transcript variant X8, misc_RNA.
ACCESSION   XR_004346721
VERSION     XR_004346721.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2349
                     /gene="IKBKE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743242"
     misc_RNA        1..2349
                     /gene="IKBKE"
                     /product="inhibitor of nuclear factor kappa B kinase
                     subunit epsilon, transcript variant X8"
                     /db_xref="GeneID:116743242"
ORIGIN      
        1 gccggcaggg agctgagctg agtgttggcc tttgctccca gttctcccag ctcccagggt
       61 ggcacgcggc cacttcaact ggcccatctt caggttccca gggcccgtgg ccaccaggat
      121 gctatgggcg ctgcccatga atgacaacaa gccctgaaag ctcggggggc gtcacgcagt
      181 cccacaagcc tgcatgcccc acagccgaga tgggctcagc tcctggactt gccacagaca
      241 gaaaacataa cacacacttg ctggggagag tctttgcctg atccggggct gctcagagca
      301 caggaaggtg gccggccagc tgggagcaag agatgcagag taccgtcaat tacctgtggc
      361 acacggatga cctgctgggt cagggggcca ctgccagtgt gtacaaggcc cgaaacaaga
      421 aatccgggga gctggttgct gtgaaggtct tcaacacggc cagctacctg cgaccccgcg
      481 aggtgcaggt gagggagttt gaggtcctgc ggaagctgag ccaccagaac atcatcaagt
      541 tctttgcggt ggaggagacg gggggcagcc ggcagaaggt gctggtgatg gagtactgct
      601 ccagcgggag ccttctgagt gcgctggaga gccctgagaa cgcctttggg ctgcccgagg
      661 acgagttcct ggtggtgctg cgctgtgtgg tggccggcgt gaaccacctg cgggagaacg
      721 gcatcgtcca ccgggacatc aagcccggga atatcttgcg cctggtcggg gaggaggggc
      781 ggagcatcta caagctgacg gacttcgggg cagcccggga gctggatgac gacgagaagt
      841 tcgtctcggt ctacggcacc gaggagtacc tgcaccctga catgtatgag cgggcagtgc
      901 ttcgcaagcc ccaacagaaa gcttttgggg tggccgtgga tctctggagc attggggtga
      961 ccctgtacca tgcagccact ggcagcctgc ccttcgtccc ctttggaggg ccccgacgca
     1021 acaaggagat catgtaccgg atcaccacgg agaagccaac cggggccatt gcaggcactc
     1081 agaggctgga gaacgggccc ctggagtgga gctacaccct ccccatcacc tgtcagctgt
     1141 ccatggggct gcagagccag ctggtgccca tcctggccaa catcctggag gtggagcagg
     1201 ccaagtgctg gggcttcgac cagttctttg cggagaccag tgacatcctg cagcgagttg
     1261 tcgtccacgt cttctccttg ccgcaggctg tcgtgcacca cgtctacatc cacgcgcaca
     1321 acacgatagc catctttcta gaggccgtgt acaagcagac caacgtggcc ccccagcacc
     1381 aggagtacct ctttgagggt cacctctgtg tcctcgagcc cagcctctca gcacagcaca
     1441 tcgcccacac gacagcaagc agccccctga ccctgttcag catggtcagt gagaccccca
     1501 agggactggc cttcagggac cggtgtagaa ggcagatctg ggttctaatt ctgcatgcgc
     1561 ctctgaaatg ccatgtgact cgggctggtg gcctgcccaa cctgcttcac agcgtccaaa
     1621 gatctgggaa agaaactcca atggaaacag ggagatgtgg attcaatgtg gtctccacag
     1681 tctgtgctgc tctggacatc cccaagtttt tccccaaagt ggacctgcag gcagattaca
     1741 acacggccaa gggtgtgttg ggtgccggct accaggccct gcggctggca caggccttgc
     1801 tgacaggaca ggagctgatg cttcgggggc tgcactggtt cgtggagtca ctccaggcca
     1861 cgtgcaggcg gacgctggag gtcacgagga tggccctcct cttcctcagc agcagcctcg
     1921 gcactgagag gttcagcaac gtggctgggg tgcctgagat ccaggaactg aagagggccg
     1981 cagagctgag gtccaagctg cggaccttgg ctgaggtcct ctccagatgt tcccataata
     2041 tcacagagac caagatgacc ctaagcaacc tgagctctga gctgatgaag aaccgggatc
     2101 agcatccagc agattcagtg ctgtttggac aagatgtatc tcatttacaa acagttcaag
     2161 aaatccagga tgaggccagg gcttggctac aacgaggagc agattcacaa gctggataag
     2221 gtgaatttta gtcatttagc caaaaggctc ctgcaggtgt tccaggagga gcgtgtgcag
     2281 aagtaccagg catccctggc cacgcatggc aagagaatga gtggatactg tcaccccatt
     2341 tcacagatg
//
LOCUS       XM_032611649            2342 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 72 member
            A (FAM72A), transcript variant X1, mRNA.
ACCESSION   XM_032611649
VERSION     XM_032611649.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2342
                     /gene="FAM72A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743275"
     CDS             813..1262
                     /gene="FAM72A"
                     /codon_start=1
                     /product="protein FAM72A isoform X1"
                     /protein_id="XP_032467540.1"
                     /db_xref="GeneID:116743275"
                     /translation="MSTSSCSFNDRRVSILCCKFCKQVLSSRGMKAVLLADTEIDLFS
                     TDIPPTNAVDFIGRCYFTEICKCRLKDIACLKCGNIVGYHVIVPCCSCLLSCNNGHFW
                     MFHSQAVYGINRLDSTGVNFLLWGNLPEVEESTDEDMSDISAEECIR"
     misc_feature    828..1259
                     /gene="FAM72A"
                     /note="FAM72 protein; Region: FAM72; pfam14976"
                     /db_xref="CDD:405641"
ORIGIN      
        1 acgacgtgtt cagtggcaga gacaccaacg ccgacggagc ccccaaagcg acctctgtcc
       61 cgccccacca gcaccaccgc gagctctgga gcggcagctc gggaaagact tgagggaacg
      121 gcgcggggca tgagggaaag ctgaggagag ggagtcgcga gaggaacgac gcgagagccc
      181 gcacgctgag ggctggggac tgccaggaga gaagtgaaga gggcggcccg cgaaagagca
      241 gagcggagaa gggtcgcggg atgattaagg aacacccggg attgcccggt gggaaaagct
      301 gaggggattt ctgaatcctg gggagaggag aaagatttcc aaagaggacg cgtgggtagg
      361 gacgcttagt ccgcgatccg agagaggaat tggagcgctc cgagggaggg gcttaagggg
      421 gaagctttag ataaaagagc ctgtacggga gaagctaagg gaattgcaaa aggagcagga
      481 gctaaagagt agaggatcct tcagactgga gaaaggggaa actagagaag ttcccgaggc
      541 accttgcagc ctgcctcctc cccacttcaa actcctctct cttccccgaa agttaaagag
      601 aaagccaagg ttgctgcttc tccccggttt ctactcaata aatattactt ttaccctccc
      661 acgggaaaac agaaaagaac tcatttcctt ctcaatttcc gggcttagaa aagatcgagg
      721 cctcgcaatt tgatttttcg cctgggagaa tcaaactagg gagggtattg ctctattttc
      781 aaaatcccac acctcatcct tccccggacg ccatgtctac gagcagctgt agtttcaatg
      841 accggcgcgt gtccatcctg tgttgcaaat tctgtaaaca agtgctcagc tctaggggaa
      901 tgaaggctgt tttgctggct gacactgaaa tagacctttt ctctacagac atccctccta
      961 ccaatgcagt ggacttcatt ggaagatgct atttcactga aatttgcaaa tgtagactga
     1021 aggacatcgc atgtttaaaa tgtgggaaca ttgtaggtta tcatgtgatt gttccatgtt
     1081 gttcctgcct tctttcctgc aacaatggac acttttggat gtttcacagc caggcagttt
     1141 atggtattaa cagactagac tctactggtg taaacttcct actttggggc aacttgccag
     1201 aggtagaaga gagtacagat gaagacatgt cagatatctc agcagaggag tgtattagat
     1261 gaatagaatt ataatatata taatatttaa actttttcct atgttaaaaa atatattaat
     1321 ggaccaattc aaaaattgtt agtaaggatg tgccagtgat ttattttttt ggaaaacaaa
     1381 aatgggacat ttgttgattt atttattttc tgtctcaaat taattacctg agtttattga
     1441 accaatgtag tccttttctt ctacttctgc ttctacttct acccttcctc tctccatccc
     1501 tcttcccagt ataggtgtac tcttaaattc cgatagtaga agaatctttc atgtgtcact
     1561 caactatctc ccaatctagg gacggttttc ttacaactag atgccagatg ctgttaattt
     1621 tacatttgaa taaggggcat tagtatccac acatatatca ccatgcttat atccatgcat
     1681 aaatctatgc acataaccat gcatataagc atgtatatat gtgtgaagcg cagctgggaa
     1741 ttaaaactta acagggactt tgtaaaaata ggctattagg tttccatggg tactggttat
     1801 catatgttat attggtgata actatgttaa tatggaacga gactttgtga atgtgtggag
     1861 aaatcctctt gattcctcag catgatgtta gataaatgaa tttgccagga aattatcaat
     1921 atatgctgtt tactaatatt atttatttac attcttctaa agtcatatgg atattgtatt
     1981 atgaaagcca gataacctcc atctttaagt tttcccattc tccggggctt tttctgtgaa
     2041 tagcaaattt tagatgagta gtctcagtcc taacccttaa atagaaaaaa tttaaagaag
     2101 tggtttgctt aagccattgt acattataaa gaaggttttt taaaattttg ttttgttttg
     2161 tttatctgca ttcagagcca cacaggaata agaaactggg atagtgttgg attcttgttt
     2221 tatgaaaagc taaaatcaat gtatcacctt aactaatatt ttagccaaag gcattttgtc
     2281 aatagtaata ccaaaacaga ccaagttaca gttttgtaaa taaagttttg ttctaaagat
     2341 ga
//
LOCUS       XM_032611658            1750 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 72 member
            A (FAM72A), transcript variant X2, mRNA.
ACCESSION   XM_032611658
VERSION     XM_032611658.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1750
                     /gene="FAM72A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 93% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743275"
     CDS             221..670
                     /gene="FAM72A"
                     /codon_start=1
                     /product="protein FAM72A isoform X2"
                     /protein_id="XP_032467549.1"
                     /db_xref="GeneID:116743275"
                     /translation="MPTTVARRWTKAASVQRTWGGGWVQTARRHVSQGRVPGSTVKGG
                     DAQSGEGAVDFIGRCYFTEICKCRLKDIACLKCGNIVGYHVIVPCCSCLLSCNNGHFW
                     MFHSQAVYGINRLDSTGVNFLLWGNLPEVEESTDEDMSDISAEECIR"
     misc_feature    <368..667
                     /gene="FAM72A"
                     /note="FAM72 protein; Region: FAM72; pfam14976"
                     /db_xref="CDD:405641"
ORIGIN      
        1 ttacatggag tactaggata ttagcaactt tggggaccca gatataggtc tgggagcggg
       61 agtgcgtgaa gaggagccat tccgggcggg ccgggggctg gggcagggga agagccccgg
      121 aagcagtgcg gaacacccat ccttctgggt ccagggctgt aacccgacag tctgccagga
      181 cttggagaca gagaaagaga gcagccgatg gttacgggtg atgccaacga cggttgcccg
      241 aaggtggacc aaggctgcta gtgtgcagag gacttgggga gggggctggg tgcagactgc
      301 gcggcggcat gtgagccaag gcagagtccc aggcagtacg gtaaagggcg gagatgcaca
      361 gagcggagaa ggtgcagtgg acttcattgg aagatgctat ttcactgaaa tttgcaaatg
      421 tagactgaag gacatcgcat gtttaaaatg tgggaacatt gtaggttatc atgtgattgt
      481 tccatgttgt tcctgccttc tttcctgcaa caatggacac ttttggatgt ttcacagcca
      541 ggcagtttat ggtattaaca gactagactc tactggtgta aacttcctac tttggggcaa
      601 cttgccagag gtagaagaga gtacagatga agacatgtca gatatctcag cagaggagtg
      661 tattagatga atagaattat aatatatata atatttaaac tttttcctat gttaaaaaat
      721 atattaatgg accaattcaa aaattgttag taaggatgtg ccagtgattt atttttttgg
      781 aaaacaaaaa tgggacattt gttgatttat ttattttctg tctcaaatta attacctgag
      841 tttattgaac caatgtagtc cttttcttct acttctgctt ctacttctac ccttcctctc
      901 tccatccctc ttcccagtat aggtgtactc ttaaattccg atagtagaag aatctttcat
      961 gtgtcactca actatctccc aatctaggga cggttttctt acaactagat gccagatgct
     1021 gttaatttta catttgaata aggggcatta gtatccacac atatatcacc atgcttatat
     1081 ccatgcataa atctatgcac ataaccatgc atataagcat gtatatatgt gtgaagcgca
     1141 gctgggaatt aaaacttaac agggactttg taaaaatagg ctattaggtt tccatgggta
     1201 ctggttatca tatgttatat tggtgataac tatgttaata tggaacgaga ctttgtgaat
     1261 gtgtggagaa atcctcttga ttcctcagca tgatgttaga taaatgaatt tgccaggaaa
     1321 ttatcaatat atgctgttta ctaatattat ttatttacat tcttctaaag tcatatggat
     1381 attgtattat gaaagccaga taacctccat ctttaagttt tcccattctc cggggctttt
     1441 tctgtgaata gcaaatttta gatgagtagt ctcagtccta acccttaaat agaaaaaatt
     1501 taaagaagtg gtttgcttaa gccattgtac attataaaga aggtttttta aaattttgtt
     1561 ttgttttgtt tatctgcatt cagagccaca caggaataag aaactgggat agtgttggat
     1621 tcttgtttta tgaaaagcta aaatcaatgt atcaccttaa ctaatatttt agccaaaggc
     1681 attttgtcaa tagtaatacc aaaacagacc aagttacagt tttgtaaata aagttttgtt
     1741 ctaaagatga
//
LOCUS       XM_032611665            2217 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 72 member
            A (FAM72A), transcript variant X3, mRNA.
ACCESSION   XM_032611665
VERSION     XM_032611665.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2217
                     /gene="FAM72A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743275"
     CDS             813..1097
                     /gene="FAM72A"
                     /codon_start=1
                     /product="protein FAM72A isoform X3"
                     /protein_id="XP_032467556.1"
                     /db_xref="GeneID:116743275"
                     /translation="MSTSSCSFNDRRVSILCCKFCKQVLSSRGMKAVLLADTEIDLFS
                     TDIPPTNAVDFIGRCYFTEICKCRLKDIACLKWCKLPTLGQLARGRREYR"
     misc_feature    828..>1040
                     /gene="FAM72A"
                     /note="FAM72 protein; Region: FAM72; pfam14976"
                     /db_xref="CDD:405641"
ORIGIN      
        1 acgacgtgtt cagtggcaga gacaccaacg ccgacggagc ccccaaagcg acctctgtcc
       61 cgccccacca gcaccaccgc gagctctgga gcggcagctc gggaaagact tgagggaacg
      121 gcgcggggca tgagggaaag ctgaggagag ggagtcgcga gaggaacgac gcgagagccc
      181 gcacgctgag ggctggggac tgccaggaga gaagtgaaga gggcggcccg cgaaagagca
      241 gagcggagaa gggtcgcggg atgattaagg aacacccggg attgcccggt gggaaaagct
      301 gaggggattt ctgaatcctg gggagaggag aaagatttcc aaagaggacg cgtgggtagg
      361 gacgcttagt ccgcgatccg agagaggaat tggagcgctc cgagggaggg gcttaagggg
      421 gaagctttag ataaaagagc ctgtacggga gaagctaagg gaattgcaaa aggagcagga
      481 gctaaagagt agaggatcct tcagactgga gaaaggggaa actagagaag ttcccgaggc
      541 accttgcagc ctgcctcctc cccacttcaa actcctctct cttccccgaa agttaaagag
      601 aaagccaagg ttgctgcttc tccccggttt ctactcaata aatattactt ttaccctccc
      661 acgggaaaac agaaaagaac tcatttcctt ctcaatttcc gggcttagaa aagatcgagg
      721 cctcgcaatt tgatttttcg cctgggagaa tcaaactagg gagggtattg ctctattttc
      781 aaaatcccac acctcatcct tccccggacg ccatgtctac gagcagctgt agtttcaatg
      841 accggcgcgt gtccatcctg tgttgcaaat tctgtaaaca agtgctcagc tctaggggaa
      901 tgaaggctgt tttgctggct gacactgaaa tagacctttt ctctacagac atccctccta
      961 ccaatgcagt ggacttcatt ggaagatgct atttcactga aatttgcaaa tgtagactga
     1021 aggacatcgc atgtttaaaa tggtgtaaac ttcctacttt ggggcaactt gccagaggta
     1081 gaagagagta cagatgaaga catgtcagat atctcagcag aggagtgtat tagatgaata
     1141 gaattataat atatataata tttaaacttt ttcctatgtt aaaaaatata ttaatggacc
     1201 aattcaaaaa ttgttagtaa ggatgtgcca gtgatttatt tttttggaaa acaaaaatgg
     1261 gacatttgtt gatttattta ttttctgtct caaattaatt acctgagttt attgaaccaa
     1321 tgtagtcctt ttcttctact tctgcttcta cttctaccct tcctctctcc atccctcttc
     1381 ccagtatagg tgtactctta aattccgata gtagaagaat ctttcatgtg tcactcaact
     1441 atctcccaat ctagggacgg ttttcttaca actagatgcc agatgctgtt aattttacat
     1501 ttgaataagg ggcattagta tccacacata tatcaccatg cttatatcca tgcataaatc
     1561 tatgcacata accatgcata taagcatgta tatatgtgtg aagcgcagct gggaattaaa
     1621 acttaacagg gactttgtaa aaataggcta ttaggtttcc atgggtactg gttatcatat
     1681 gttatattgg tgataactat gttaatatgg aacgagactt tgtgaatgtg tggagaaatc
     1741 ctcttgattc ctcagcatga tgttagataa atgaatttgc caggaaatta tcaatatatg
     1801 ctgtttacta atattattta tttacattct tctaaagtca tatggatatt gtattatgaa
     1861 agccagataa cctccatctt taagttttcc cattctccgg ggctttttct gtgaatagca
     1921 aattttagat gagtagtctc agtcctaacc cttaaataga aaaaatttaa agaagtggtt
     1981 tgcttaagcc attgtacatt ataaagaagg ttttttaaaa ttttgttttg ttttgtttat
     2041 ctgcattcag agccacacag gaataagaaa ctgggatagt gttggattct tgttttatga
     2101 aaagctaaaa tcaatgtatc accttaacta atattttagc caaaggcatt ttgtcaatag
     2161 taataccaaa acagaccaag ttacagtttt gtaaataaag ttttgttcta aagatga
//
LOCUS       XM_032611673            6379 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and SCAN domain containing 20
            (ZSCAN20), transcript variant X1, mRNA.
ACCESSION   XM_032611673
VERSION     XM_032611673.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6379
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6379
                     /gene="ZSCAN20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743287"
     CDS             86..3286
                     /gene="ZSCAN20"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     20 isoform X1"
                     /protein_id="XP_032467564.1"
                     /db_xref="GeneID:116743287"
                     /translation="MQEDAGQGRPAERRHPGETMAVALEARAQASPLPEPEELLIVKL
                     EEDSCRPDSQPREKDHDPVPGPEASRQRFRQFRYRDAAGPHEAFSQLWALCCHWLRPE
                     IRLKEQILELLVLEQFLTILPREVQAWVQARHPESGEEAVALVEDWHREARAAGQREL
                     ELCAEETRSLKTVKESQSFQLWTADHWPEGQSQKQWVKNPCPDLPKHLDTKMASQPLK
                     ESAVLTPRVPTLPKMGSVGDWEVTVASQEALGPGRHAEKEFCKDPPGDSCGNGLPLGV
                     PVSKPTIISQQEQGPEFWGPRFVNSGQKNPEDYSWDTEQTKPAQALAWRDSKAWEERY
                     QWDMEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRAQGFL
                     RTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVRARTAIRASDGPGEVVALP
                     RLGDSDMEVDEQEEGGWEPEETTDDCNGDDSHLATGEFVHRPRIPEGPALLQSRIAGV
                     HWGYEETKAFLTILSESPFSEKLHTCHQNSQVYRAIAERLCAQGFLRTLEQCRYRFKN
                     LLRSYRKAKSSHPPGTCPFYEELDSLMRARTAVRDMGTSKEAVGLPTSGESGTQVVNQ
                     EAWDEMAGEDAIRSPTPGPKTPDTGFEMRHEDEDQISEQDIFEGLPGALSKCTAEDCY
                     PHDWGEDSENENEGKGRWGNPSQDQWEECSSEEDLEKLIDHQGLYLAEKPFKCDTCMK
                     RFSRNSQLIAHQRIHTGERPYKCLECGKSFSDRSNFNTHQRIHTGEKPYKCLECGKSF
                     SDHSNLITHQRTHTRVKPYKCGECWEGFTQSSNLLKHQRIHLGGNPDHCGEPGKNSGQ
                     SPSFSAHWRNSAEETSLEQTQSASKNLNSPGLQSTNSGDKLYQCSECGRSFSKSSALI
                     SHQRIHTGEKPYGCAECGKSFSKSSTLANHQRTHTGEKPYECADCGKCFGERSKLITH
                     QRVHTGEKPYRCLECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLIIHQR
                     IHTGEKPYKCMECGKDFNNSSHFSAHRRTHAGGKAS"
     misc_feature    323..559
                     /gene="ZSCAN20"
                     /note="leucine rich region; Region: SCAN; smart00431"
                     /db_xref="CDD:128708"
     misc_feature    1118..1363
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    1604..1849
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    2249..>3241
                     /gene="ZSCAN20"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2288..2350
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2288..2290,2297..2299,2336..2338,2348..2350)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2303..2305,2309..2311,2315..2317,2321..2326,
                     2333..2338,2345..2347,2387..2389,2393..2395,2405..2410,
                     2417..2422,2429..2431,2471..2473,2477..2479,2483..2485,
                     2489..2494,2501..2506,2513..2515)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2372..2434
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2456..2518
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2540..2602
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2783..2845
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2783..2785,2792..2794,2831..2833,2843..2845)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2867..2929
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2951..3013
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2951..2953,2960..2962,2999..3001,3011..3013)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3035..3097
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3035..3037,3044..3046,3083..3085,3095..3097)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3050..3052,3056..3058,3062..3064,3068..3073,
                     3080..3085,3092..3094,3134..3136,3140..3142,3152..3157,
                     3164..3169,3176..3178,3218..3220,3224..3226,3230..3232,
                     3236..3241,3248..3253,3260..3262)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3119..3181
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3203..3265
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cttccgccct gttgtgaagt gggtgtctcg gtggaggctg ggggagcatt tcctctccca
       61 ggagcccctt gaggacacac tacagatgca ggaagacgct ggacaaggac ggccagctga
      121 aaggaggcat ccaggagaga ccatggctgt agccctggaa gcccgggccc aggcctcccc
      181 gctcccagag cctgaagaac tcttgattgt caagctggag gaggactcgt gcagaccaga
      241 ctcccaaccc cgggagaagg accatgaccc tgtccctggc cccgaggcct cccgccagcg
      301 cttcaggcag ttccggtaca gggatgcggc gggaccccat gaggccttca gccagctctg
      361 ggcactctgc tgtcactggc tgaggccgga gatccgcctc aaagagcaga tactggagtt
      421 gctggtgctg gagcagttcc tgactatctt acccagggag gtccaggcct gggtacaggc
      481 acgccatcct gagagcggcg aggaggcagt ggccctggtg gaggattggc accgagaggc
      541 gcgggccgcg ggacagcggg aactggaact gtgtgcagaa gagaccaggt ccttaaagac
      601 agtgaaggaa tctcagagct tccagctgtg gacagcagat cactggcccg agggacagtc
      661 ccagaaacag tgggtgaaga atccatgtcc tgaccttccc aagcatctag acaccaagat
      721 ggcatcacag cccttgaaag agagtgctgt cctgactccc cgagtcccta ctctaccaaa
      781 gatgggaagc gttggagatt gggaggtaac agtggcgtct caggaagccc tgggtcctgg
      841 cagacacgct gagaaggagt tctgcaagga ccccccagga gacagctgtg ggaacggcct
      901 gcccctggga gttccagttt caaaaccaac catcatctcc cagcaagagc aaggaccaga
      961 attttggggt ccaagatttg taaattctgg acaaaagaac cctgaagatt acagctggga
     1021 tactgagcaa acaaaaccag ctcaggcatt ggcctggagg gattccaagg cctgggaaga
     1081 acgatatcag tgggacatgg aggatgtgaa agtatcaggt gtgcactgga gctatgagga
     1141 gactaagact ttcctggcaa ttttgagtga gtctcctttt tctgaaaaac tccggacttg
     1201 tcaccagaac cgccaggtgt accgggccat tgcagagcgg ctgagggcac agggcttcct
     1261 gcggaccctg gagcagtgtc gctacagggt caaaaatctc ctacggaatt accggaaagc
     1321 caagagcagc cacccaccgg ggacctgccc cttctatgag gagctggagg ccctggtgag
     1381 ggctcggacg gccatcagag cctcagatgg cccaggagag gttgtggctc tccccaggct
     1441 gggggacagt gatatggagg tggatgagca ggaggaaggg ggctgggagc ctgaggaaac
     1501 aacggatgac tgtaatggtg atgacagtca cctggccact ggagagttcg tccacagacc
     1561 caggattcca gagggcccag ctctgctcca gagtcgtatt gcaggtgtgc actggggcta
     1621 cgaggagacc aaggccttcc tgaccattct cagtgagtcc ccattctctg agaagcttca
     1681 cacttgtcac cagaacagcc aggtgtaccg ggccattgca gagcggctgt gtgcacaggg
     1741 cttcctgcgg accctggagc agtgtcgcta cagattcaaa aacctccttc gaagctaccg
     1801 aaaagccaag agcagccacc cacctgggac ctgccccttc tatgaggagc tggactcgct
     1861 gatgagggct cggactgcgg ttagagacat ggggaccagc aaggaggcag tgggtcttcc
     1921 tacttctggg gagagtggta cccaggttgt caaccaggag gcctgggatg aaatggcagg
     1981 tgaagatgcc atcagatctc caaccccagg tcctaaaacc ccagacactg gttttgagat
     2041 gaggcatgag gatgaagacc agatttcaga gcaagacatt tttgaaggtt tgcctggagc
     2101 cttatcaaag tgtactgcag aggattgcta ccctcatgat tggggggaag acagtgaaaa
     2161 tgaaaacgaa ggtaaagggc ggtggggaaa tccatcccag gatcagtggg aagaatgttc
     2221 ttctgaagag gacttagaaa aactcatcga tcatcaaggc ctgtaccttg cagagaaacc
     2281 cttcaagtgt gacacgtgca tgaaaaggtt cagccggaat tcgcagttaa tcgcccacca
     2341 gcggatacac acaggtgaga ggccctacaa atgccttgaa tgtgggaaaa gctttagtga
     2401 ccgctccaac ttcaataccc atcagagaat ccacactgga gagaagccct acaaatgcct
     2461 tgaatgtggg aaaagcttta gtgaccactc caatctcatc acccaccaga gaacgcacac
     2521 gagggtgaaa ccctataaat gtggggaatg ttgggaaggc ttcacccaga gctcaaacct
     2581 tctgaaacat cagagaatcc acttgggagg aaatcctgat cactgtggtg agcctgggaa
     2641 aaactctggc cagagcccat cctttagtgc tcactggagg aactcagcag aggagacatc
     2701 tctggaacaa actcagagtg ccagtaagaa cttgaattct cctggactgc aaagcaccaa
     2761 ctcaggggat aaactttatc agtgttccga atgtggaaga agcttctcca agagttctgc
     2821 cctcatcagt caccaaagaa tccacacggg agagaaacca tatggatgtg ccgaatgtgg
     2881 gaaaagcttc agtaagagct ccactctggc caaccaccag cgaacccaca ctggggagaa
     2941 gccgtatgag tgtgcggact gtgggaaatg cttcggggag cgttccaagc tcatcacaca
     3001 ccagagggtg cacacaggag agaagcccta cagatgcctc gagtgtggga agttcttccg
     3061 tgaccgttcc aacctcatta cccaccagag aatccacaca ggagagaaac cttataagtg
     3121 cagagagtgt gggaaatgct ttaaccagag ctccagtctt attattcacc agagaatcca
     3181 caccggggag aaaccctaca agtgtatgga gtgtggcaaa gatttcaaca acagctccca
     3241 cttcagtgcc cacaggagaa cccatgcagg agggaaggcg tcataggaga caaaagagaa
     3301 aaacgtatat ttaaatctcc caagatccta agacatatgc tagaaagaaa ctgtcccaat
     3361 ttttaagatt agcgtgtacc tggggaactt accttggtac agtccaggta attcggaagt
     3421 gaattacaaa tgctaacgat ccagatttga aggcactttt cttaagtgta atgtgttttt
     3481 tctcctgcaa aaaaacccac acagtcctca ggctgccctt atatttgctg ttgtgtaaga
     3541 gctttatcag tgtttgagcc agactggtaa ctgaggggat tagaggtaaa tcagtgatcc
     3601 tgagcagtga ttctagacct ttctgtgcct tcacaccatc cacatgtaca cacgccccat
     3661 cagtgtatgt tggcaaattc tcatatgtgg ccattttccg ttggggcata acctcctggg
     3721 agaactttga gactctccag tgatgggggc ataattgaga atcagtggcc tagagcagcc
     3781 accatgagct tatcaaaggg tagaaacaac agtgacatca ttactagatc attattaata
     3841 atagcaaaag tagccagcat ctatcgagct cttcagcagg ctttgtgcta agcactttgt
     3901 atacatcatc tcatttactc ctcacagcag ccccaggagg tactaatatt ttccccattt
     3961 cccagaagag agaagtgact tgcttgggtc acacatctga aaatggcaga ggcaggattc
     4021 aaccagctct gtctctaggg cctgaggtgc tttcactgct tcactgaatc ccctttcaca
     4081 ttggggcagg taactcaggt gccaaagcac tttgtagacc acattttctg ttaaaattcc
     4141 ctatgagttc tgtctttaac aaatatggac attgagaatc ccagaagatt gaaggactgg
     4201 ggatgttcag agttggcaat gtgctttgag caaggctgaa ctcatcaaag cacttgatgt
     4261 gaatttccat cttcacaata atatggggga gagacagagg tgagttgaga ttgggaacaa
     4321 gaatgtagcc aaagtgatgt ttcttccaat gagatacagt tttggctaag gaaatgggat
     4381 ttttaagaat ttcccttatt ctcagggggg tcagccctgc ttcctgttag acttggctgg
     4441 atcgtaggtt gaaccttaag aaacctgggc ttgctggcca gtgctcactt accctggtgt
     4501 gttggccccc tggccctttc cctccaggca cagcagaagc tttgcgccaa ggctgaggca
     4561 gaagtggggt ggaaggagtg gtgtgtgtgg ggtgccgcgg agggggcttt gaaggctatt
     4621 gcttaatcca ggttcatggt gcacttttac tctgagccat cttgaaccag acctacccag
     4681 cgctgtctaa atgttggccg taaagacctg cctccagctc caacaggctc aatcagaaag
     4741 gttcacacag gatggtttcc tagttcgcag cgctttggcc tccaggattt ctcctcagga
     4801 gggttaaaca atgttggcca aggactatgg tttccaaagg attttaaagg agcatccctc
     4861 tcctgacatc cgcctatgat accgggaatg ccgttcatac cctggctcgt tcatcaactt
     4921 gggaagtact attagatagt agatgtgagg gaaccttgaa gagtggaact ctgcatgtga
     4981 agcagtcagt ggggagactg gcgctcccac cgacgcttat cacaccttag tcccttcctc
     5041 ggcttcccaa gaacctgctt acctcggatc actgcctatc acccccttcc cggtttacct
     5101 cttctggctc accttacctc tgaggagcag ggcctgtgag tgagccctgg ctttgaacca
     5161 ccaggtgtca gtaactgcaa cagtaggatg gtgggtaggg aagcacctga gccaagagga
     5221 aggatcctgc aggaagggaa gggaggtcca gggaaagacc aagtggtgtg aaatagcatg
     5281 gcttcagggt ggggctggga ccataacttc ttagctctat tggggtttgt aaatgggaga
     5341 tgaggagtgt tagctcagat tagaagggtg tgggggggcg gtcatggagg acccgtggct
     5401 gctgaggggg acatggtcag atgcgcggtg ttgaaaccta atagctgaac agaacctgca
     5461 gttaggacag cctgttggga cactgttgca atattccagg taaacgtgag ggtccgaact
     5521 agagcagggg taacgttgaa gaggagggga tgattcgaga ggttgcacag gtagaattga
     5581 ggacagcaga ggagagccag gctgcctggg tggctggtgg agcctgctgt cattcagaac
     5641 tgggatcaca ggaggaggtg gaggtagggc aggagggcag aagatcagaa gtttaatttg
     5701 ggccattttg gttagggaca tccaagaggt gatacactac gaagcaggca tttggatatc
     5761 tgggcctgaa gctgggggga ggttaggact agacagttat ctgtatgctt gggagttacc
     5821 ttcatgttca agtcacagaa aggctgggcc cgggacagaa ctggagaagc accacgtgta
     5881 gaggaagatg cccctcagag gagatctaga ctacccccca gtcccaccac ctcctgagca
     5941 ctccagccaa ctttcggaca ctgcctcaat cgctgctgac accggaattg tcaatgtagt
     6001 tctgaatttc ctggaacctt ccctgtagaa gccaagctga gctctgtgta gaagtgagat
     6061 aatggccctc tcccctccca agcatcagcc gttcccctgc tcttggaagt gtgctggtgt
     6121 ctcatgttct caagtgaaca gttttgatgt ttattaccta ttggtccttt ctcgtaactc
     6181 aggttcagcc atgaaatcga gggcattgtg ggccaggaga gaaagtggcc caggaggacc
     6241 ttctctcctt gtgtacctga ctcttccttt ggaagaagtt ccctttcagg tggcttccat
     6301 gtttggggcc cgacccatca ctctgccagg gtacccagac atccttcaac aggtctttgc
     6361 tgctcaaata aaccgacat
//
LOCUS       XM_032611677            6409 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and SCAN domain containing 20
            (ZSCAN20), transcript variant X2, mRNA.
ACCESSION   XM_032611677
VERSION     XM_032611677.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6409
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6409
                     /gene="ZSCAN20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743287"
     CDS             116..3316
                     /gene="ZSCAN20"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     20 isoform X1"
                     /protein_id="XP_032467568.1"
                     /db_xref="GeneID:116743287"
                     /translation="MQEDAGQGRPAERRHPGETMAVALEARAQASPLPEPEELLIVKL
                     EEDSCRPDSQPREKDHDPVPGPEASRQRFRQFRYRDAAGPHEAFSQLWALCCHWLRPE
                     IRLKEQILELLVLEQFLTILPREVQAWVQARHPESGEEAVALVEDWHREARAAGQREL
                     ELCAEETRSLKTVKESQSFQLWTADHWPEGQSQKQWVKNPCPDLPKHLDTKMASQPLK
                     ESAVLTPRVPTLPKMGSVGDWEVTVASQEALGPGRHAEKEFCKDPPGDSCGNGLPLGV
                     PVSKPTIISQQEQGPEFWGPRFVNSGQKNPEDYSWDTEQTKPAQALAWRDSKAWEERY
                     QWDMEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRAQGFL
                     RTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVRARTAIRASDGPGEVVALP
                     RLGDSDMEVDEQEEGGWEPEETTDDCNGDDSHLATGEFVHRPRIPEGPALLQSRIAGV
                     HWGYEETKAFLTILSESPFSEKLHTCHQNSQVYRAIAERLCAQGFLRTLEQCRYRFKN
                     LLRSYRKAKSSHPPGTCPFYEELDSLMRARTAVRDMGTSKEAVGLPTSGESGTQVVNQ
                     EAWDEMAGEDAIRSPTPGPKTPDTGFEMRHEDEDQISEQDIFEGLPGALSKCTAEDCY
                     PHDWGEDSENENEGKGRWGNPSQDQWEECSSEEDLEKLIDHQGLYLAEKPFKCDTCMK
                     RFSRNSQLIAHQRIHTGERPYKCLECGKSFSDRSNFNTHQRIHTGEKPYKCLECGKSF
                     SDHSNLITHQRTHTRVKPYKCGECWEGFTQSSNLLKHQRIHLGGNPDHCGEPGKNSGQ
                     SPSFSAHWRNSAEETSLEQTQSASKNLNSPGLQSTNSGDKLYQCSECGRSFSKSSALI
                     SHQRIHTGEKPYGCAECGKSFSKSSTLANHQRTHTGEKPYECADCGKCFGERSKLITH
                     QRVHTGEKPYRCLECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLIIHQR
                     IHTGEKPYKCMECGKDFNNSSHFSAHRRTHAGGKAS"
     misc_feature    353..589
                     /gene="ZSCAN20"
                     /note="leucine rich region; Region: SCAN; smart00431"
                     /db_xref="CDD:128708"
     misc_feature    1148..1393
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    1634..1879
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    2279..>3271
                     /gene="ZSCAN20"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2318..2380
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2318..2320,2327..2329,2366..2368,2378..2380)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2333..2335,2339..2341,2345..2347,2351..2356,
                     2363..2368,2375..2377,2417..2419,2423..2425,2435..2440,
                     2447..2452,2459..2461,2501..2503,2507..2509,2513..2515,
                     2519..2524,2531..2536,2543..2545)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2402..2464
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2486..2548
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2570..2632
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2813..2875
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2813..2815,2822..2824,2861..2863,2873..2875)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2897..2959
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2981..3043
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2981..2983,2990..2992,3029..3031,3041..3043)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3065..3127
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3065..3067,3074..3076,3113..3115,3125..3127)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3080..3082,3086..3088,3092..3094,3098..3103,
                     3110..3115,3122..3124,3164..3166,3170..3172,3182..3187,
                     3194..3199,3206..3208,3248..3250,3254..3256,3260..3262,
                     3266..3271,3278..3283,3290..3292)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3149..3211
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3233..3295
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gcatcccagc attccctgcg cgagccctgg aacacttccg ccctgttgtg aagtgggtgt
       61 ctcgaggctg ggggagcatt tcctctccca ggagcccctt gaggacacac tacagatgca
      121 ggaagacgct ggacaaggac ggccagctga aaggaggcat ccaggagaga ccatggctgt
      181 agccctggaa gcccgggccc aggcctcccc gctcccagag cctgaagaac tcttgattgt
      241 caagctggag gaggactcgt gcagaccaga ctcccaaccc cgggagaagg accatgaccc
      301 tgtccctggc cccgaggcct cccgccagcg cttcaggcag ttccggtaca gggatgcggc
      361 gggaccccat gaggccttca gccagctctg ggcactctgc tgtcactggc tgaggccgga
      421 gatccgcctc aaagagcaga tactggagtt gctggtgctg gagcagttcc tgactatctt
      481 acccagggag gtccaggcct gggtacaggc acgccatcct gagagcggcg aggaggcagt
      541 ggccctggtg gaggattggc accgagaggc gcgggccgcg ggacagcggg aactggaact
      601 gtgtgcagaa gagaccaggt ccttaaagac agtgaaggaa tctcagagct tccagctgtg
      661 gacagcagat cactggcccg agggacagtc ccagaaacag tgggtgaaga atccatgtcc
      721 tgaccttccc aagcatctag acaccaagat ggcatcacag cccttgaaag agagtgctgt
      781 cctgactccc cgagtcccta ctctaccaaa gatgggaagc gttggagatt gggaggtaac
      841 agtggcgtct caggaagccc tgggtcctgg cagacacgct gagaaggagt tctgcaagga
      901 ccccccagga gacagctgtg ggaacggcct gcccctggga gttccagttt caaaaccaac
      961 catcatctcc cagcaagagc aaggaccaga attttggggt ccaagatttg taaattctgg
     1021 acaaaagaac cctgaagatt acagctggga tactgagcaa acaaaaccag ctcaggcatt
     1081 ggcctggagg gattccaagg cctgggaaga acgatatcag tgggacatgg aggatgtgaa
     1141 agtatcaggt gtgcactgga gctatgagga gactaagact ttcctggcaa ttttgagtga
     1201 gtctcctttt tctgaaaaac tccggacttg tcaccagaac cgccaggtgt accgggccat
     1261 tgcagagcgg ctgagggcac agggcttcct gcggaccctg gagcagtgtc gctacagggt
     1321 caaaaatctc ctacggaatt accggaaagc caagagcagc cacccaccgg ggacctgccc
     1381 cttctatgag gagctggagg ccctggtgag ggctcggacg gccatcagag cctcagatgg
     1441 cccaggagag gttgtggctc tccccaggct gggggacagt gatatggagg tggatgagca
     1501 ggaggaaggg ggctgggagc ctgaggaaac aacggatgac tgtaatggtg atgacagtca
     1561 cctggccact ggagagttcg tccacagacc caggattcca gagggcccag ctctgctcca
     1621 gagtcgtatt gcaggtgtgc actggggcta cgaggagacc aaggccttcc tgaccattct
     1681 cagtgagtcc ccattctctg agaagcttca cacttgtcac cagaacagcc aggtgtaccg
     1741 ggccattgca gagcggctgt gtgcacaggg cttcctgcgg accctggagc agtgtcgcta
     1801 cagattcaaa aacctccttc gaagctaccg aaaagccaag agcagccacc cacctgggac
     1861 ctgccccttc tatgaggagc tggactcgct gatgagggct cggactgcgg ttagagacat
     1921 ggggaccagc aaggaggcag tgggtcttcc tacttctggg gagagtggta cccaggttgt
     1981 caaccaggag gcctgggatg aaatggcagg tgaagatgcc atcagatctc caaccccagg
     2041 tcctaaaacc ccagacactg gttttgagat gaggcatgag gatgaagacc agatttcaga
     2101 gcaagacatt tttgaaggtt tgcctggagc cttatcaaag tgtactgcag aggattgcta
     2161 ccctcatgat tggggggaag acagtgaaaa tgaaaacgaa ggtaaagggc ggtggggaaa
     2221 tccatcccag gatcagtggg aagaatgttc ttctgaagag gacttagaaa aactcatcga
     2281 tcatcaaggc ctgtaccttg cagagaaacc cttcaagtgt gacacgtgca tgaaaaggtt
     2341 cagccggaat tcgcagttaa tcgcccacca gcggatacac acaggtgaga ggccctacaa
     2401 atgccttgaa tgtgggaaaa gctttagtga ccgctccaac ttcaataccc atcagagaat
     2461 ccacactgga gagaagccct acaaatgcct tgaatgtggg aaaagcttta gtgaccactc
     2521 caatctcatc acccaccaga gaacgcacac gagggtgaaa ccctataaat gtggggaatg
     2581 ttgggaaggc ttcacccaga gctcaaacct tctgaaacat cagagaatcc acttgggagg
     2641 aaatcctgat cactgtggtg agcctgggaa aaactctggc cagagcccat cctttagtgc
     2701 tcactggagg aactcagcag aggagacatc tctggaacaa actcagagtg ccagtaagaa
     2761 cttgaattct cctggactgc aaagcaccaa ctcaggggat aaactttatc agtgttccga
     2821 atgtggaaga agcttctcca agagttctgc cctcatcagt caccaaagaa tccacacggg
     2881 agagaaacca tatggatgtg ccgaatgtgg gaaaagcttc agtaagagct ccactctggc
     2941 caaccaccag cgaacccaca ctggggagaa gccgtatgag tgtgcggact gtgggaaatg
     3001 cttcggggag cgttccaagc tcatcacaca ccagagggtg cacacaggag agaagcccta
     3061 cagatgcctc gagtgtggga agttcttccg tgaccgttcc aacctcatta cccaccagag
     3121 aatccacaca ggagagaaac cttataagtg cagagagtgt gggaaatgct ttaaccagag
     3181 ctccagtctt attattcacc agagaatcca caccggggag aaaccctaca agtgtatgga
     3241 gtgtggcaaa gatttcaaca acagctccca cttcagtgcc cacaggagaa cccatgcagg
     3301 agggaaggcg tcataggaga caaaagagaa aaacgtatat ttaaatctcc caagatccta
     3361 agacatatgc tagaaagaaa ctgtcccaat ttttaagatt agcgtgtacc tggggaactt
     3421 accttggtac agtccaggta attcggaagt gaattacaaa tgctaacgat ccagatttga
     3481 aggcactttt cttaagtgta atgtgttttt tctcctgcaa aaaaacccac acagtcctca
     3541 ggctgccctt atatttgctg ttgtgtaaga gctttatcag tgtttgagcc agactggtaa
     3601 ctgaggggat tagaggtaaa tcagtgatcc tgagcagtga ttctagacct ttctgtgcct
     3661 tcacaccatc cacatgtaca cacgccccat cagtgtatgt tggcaaattc tcatatgtgg
     3721 ccattttccg ttggggcata acctcctggg agaactttga gactctccag tgatgggggc
     3781 ataattgaga atcagtggcc tagagcagcc accatgagct tatcaaaggg tagaaacaac
     3841 agtgacatca ttactagatc attattaata atagcaaaag tagccagcat ctatcgagct
     3901 cttcagcagg ctttgtgcta agcactttgt atacatcatc tcatttactc ctcacagcag
     3961 ccccaggagg tactaatatt ttccccattt cccagaagag agaagtgact tgcttgggtc
     4021 acacatctga aaatggcaga ggcaggattc aaccagctct gtctctaggg cctgaggtgc
     4081 tttcactgct tcactgaatc ccctttcaca ttggggcagg taactcaggt gccaaagcac
     4141 tttgtagacc acattttctg ttaaaattcc ctatgagttc tgtctttaac aaatatggac
     4201 attgagaatc ccagaagatt gaaggactgg ggatgttcag agttggcaat gtgctttgag
     4261 caaggctgaa ctcatcaaag cacttgatgt gaatttccat cttcacaata atatggggga
     4321 gagacagagg tgagttgaga ttgggaacaa gaatgtagcc aaagtgatgt ttcttccaat
     4381 gagatacagt tttggctaag gaaatgggat ttttaagaat ttcccttatt ctcagggggg
     4441 tcagccctgc ttcctgttag acttggctgg atcgtaggtt gaaccttaag aaacctgggc
     4501 ttgctggcca gtgctcactt accctggtgt gttggccccc tggccctttc cctccaggca
     4561 cagcagaagc tttgcgccaa ggctgaggca gaagtggggt ggaaggagtg gtgtgtgtgg
     4621 ggtgccgcgg agggggcttt gaaggctatt gcttaatcca ggttcatggt gcacttttac
     4681 tctgagccat cttgaaccag acctacccag cgctgtctaa atgttggccg taaagacctg
     4741 cctccagctc caacaggctc aatcagaaag gttcacacag gatggtttcc tagttcgcag
     4801 cgctttggcc tccaggattt ctcctcagga gggttaaaca atgttggcca aggactatgg
     4861 tttccaaagg attttaaagg agcatccctc tcctgacatc cgcctatgat accgggaatg
     4921 ccgttcatac cctggctcgt tcatcaactt gggaagtact attagatagt agatgtgagg
     4981 gaaccttgaa gagtggaact ctgcatgtga agcagtcagt ggggagactg gcgctcccac
     5041 cgacgcttat cacaccttag tcccttcctc ggcttcccaa gaacctgctt acctcggatc
     5101 actgcctatc acccccttcc cggtttacct cttctggctc accttacctc tgaggagcag
     5161 ggcctgtgag tgagccctgg ctttgaacca ccaggtgtca gtaactgcaa cagtaggatg
     5221 gtgggtaggg aagcacctga gccaagagga aggatcctgc aggaagggaa gggaggtcca
     5281 gggaaagacc aagtggtgtg aaatagcatg gcttcagggt ggggctggga ccataacttc
     5341 ttagctctat tggggtttgt aaatgggaga tgaggagtgt tagctcagat tagaagggtg
     5401 tgggggggcg gtcatggagg acccgtggct gctgaggggg acatggtcag atgcgcggtg
     5461 ttgaaaccta atagctgaac agaacctgca gttaggacag cctgttggga cactgttgca
     5521 atattccagg taaacgtgag ggtccgaact agagcagggg taacgttgaa gaggagggga
     5581 tgattcgaga ggttgcacag gtagaattga ggacagcaga ggagagccag gctgcctggg
     5641 tggctggtgg agcctgctgt cattcagaac tgggatcaca ggaggaggtg gaggtagggc
     5701 aggagggcag aagatcagaa gtttaatttg ggccattttg gttagggaca tccaagaggt
     5761 gatacactac gaagcaggca tttggatatc tgggcctgaa gctgggggga ggttaggact
     5821 agacagttat ctgtatgctt gggagttacc ttcatgttca agtcacagaa aggctgggcc
     5881 cgggacagaa ctggagaagc accacgtgta gaggaagatg cccctcagag gagatctaga
     5941 ctacccccca gtcccaccac ctcctgagca ctccagccaa ctttcggaca ctgcctcaat
     6001 cgctgctgac accggaattg tcaatgtagt tctgaatttc ctggaacctt ccctgtagaa
     6061 gccaagctga gctctgtgta gaagtgagat aatggccctc tcccctccca agcatcagcc
     6121 gttcccctgc tcttggaagt gtgctggtgt ctcatgttct caagtgaaca gttttgatgt
     6181 ttattaccta ttggtccttt ctcgtaactc aggttcagcc atgaaatcga gggcattgtg
     6241 ggccaggaga gaaagtggcc caggaggacc ttctctcctt gtgtacctga ctcttccttt
     6301 ggaagaagtt ccctttcagg tggcttccat gtttggggcc cgacccatca ctctgccagg
     6361 gtacccagac atccttcaac aggtctttgc tgctcaaata aaccgacat
//
LOCUS       XM_032611683            6365 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and SCAN domain containing 20
            (ZSCAN20), transcript variant X3, mRNA.
ACCESSION   XM_032611683
VERSION     XM_032611683.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6365
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6365
                     /gene="ZSCAN20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743287"
     CDS             72..3272
                     /gene="ZSCAN20"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     20 isoform X1"
                     /protein_id="XP_032467574.1"
                     /db_xref="GeneID:116743287"
                     /translation="MQEDAGQGRPAERRHPGETMAVALEARAQASPLPEPEELLIVKL
                     EEDSCRPDSQPREKDHDPVPGPEASRQRFRQFRYRDAAGPHEAFSQLWALCCHWLRPE
                     IRLKEQILELLVLEQFLTILPREVQAWVQARHPESGEEAVALVEDWHREARAAGQREL
                     ELCAEETRSLKTVKESQSFQLWTADHWPEGQSQKQWVKNPCPDLPKHLDTKMASQPLK
                     ESAVLTPRVPTLPKMGSVGDWEVTVASQEALGPGRHAEKEFCKDPPGDSCGNGLPLGV
                     PVSKPTIISQQEQGPEFWGPRFVNSGQKNPEDYSWDTEQTKPAQALAWRDSKAWEERY
                     QWDMEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRAQGFL
                     RTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVRARTAIRASDGPGEVVALP
                     RLGDSDMEVDEQEEGGWEPEETTDDCNGDDSHLATGEFVHRPRIPEGPALLQSRIAGV
                     HWGYEETKAFLTILSESPFSEKLHTCHQNSQVYRAIAERLCAQGFLRTLEQCRYRFKN
                     LLRSYRKAKSSHPPGTCPFYEELDSLMRARTAVRDMGTSKEAVGLPTSGESGTQVVNQ
                     EAWDEMAGEDAIRSPTPGPKTPDTGFEMRHEDEDQISEQDIFEGLPGALSKCTAEDCY
                     PHDWGEDSENENEGKGRWGNPSQDQWEECSSEEDLEKLIDHQGLYLAEKPFKCDTCMK
                     RFSRNSQLIAHQRIHTGERPYKCLECGKSFSDRSNFNTHQRIHTGEKPYKCLECGKSF
                     SDHSNLITHQRTHTRVKPYKCGECWEGFTQSSNLLKHQRIHLGGNPDHCGEPGKNSGQ
                     SPSFSAHWRNSAEETSLEQTQSASKNLNSPGLQSTNSGDKLYQCSECGRSFSKSSALI
                     SHQRIHTGEKPYGCAECGKSFSKSSTLANHQRTHTGEKPYECADCGKCFGERSKLITH
                     QRVHTGEKPYRCLECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLIIHQR
                     IHTGEKPYKCMECGKDFNNSSHFSAHRRTHAGGKAS"
     misc_feature    309..545
                     /gene="ZSCAN20"
                     /note="leucine rich region; Region: SCAN; smart00431"
                     /db_xref="CDD:128708"
     misc_feature    1104..1349
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    1590..1835
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    2235..>3227
                     /gene="ZSCAN20"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2274..2336
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2274..2276,2283..2285,2322..2324,2334..2336)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2289..2291,2295..2297,2301..2303,2307..2312,
                     2319..2324,2331..2333,2373..2375,2379..2381,2391..2396,
                     2403..2408,2415..2417,2457..2459,2463..2465,2469..2471,
                     2475..2480,2487..2492,2499..2501)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2358..2420
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2442..2504
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2526..2588
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2769..2831
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2769..2771,2778..2780,2817..2819,2829..2831)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2853..2915
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2937..2999
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2937..2939,2946..2948,2985..2987,2997..2999)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3021..3083
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3021..3023,3030..3032,3069..3071,3081..3083)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3036..3038,3042..3044,3048..3050,3054..3059,
                     3066..3071,3078..3080,3120..3122,3126..3128,3138..3143,
                     3150..3155,3162..3164,3204..3206,3210..3212,3216..3218,
                     3222..3227,3234..3239,3246..3248)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3105..3167
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3189..3251
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cacttccgcc ctgttgtgaa aggctggggg agcatttcct ctcccaggag ccccttgagg
       61 acacactaca gatgcaggaa gacgctggac aaggacggcc agctgaaagg aggcatccag
      121 gagagaccat ggctgtagcc ctggaagccc gggcccaggc ctccccgctc ccagagcctg
      181 aagaactctt gattgtcaag ctggaggagg actcgtgcag accagactcc caaccccggg
      241 agaaggacca tgaccctgtc cctggccccg aggcctcccg ccagcgcttc aggcagttcc
      301 ggtacaggga tgcggcggga ccccatgagg ccttcagcca gctctgggca ctctgctgtc
      361 actggctgag gccggagatc cgcctcaaag agcagatact ggagttgctg gtgctggagc
      421 agttcctgac tatcttaccc agggaggtcc aggcctgggt acaggcacgc catcctgaga
      481 gcggcgagga ggcagtggcc ctggtggagg attggcaccg agaggcgcgg gccgcgggac
      541 agcgggaact ggaactgtgt gcagaagaga ccaggtcctt aaagacagtg aaggaatctc
      601 agagcttcca gctgtggaca gcagatcact ggcccgaggg acagtcccag aaacagtggg
      661 tgaagaatcc atgtcctgac cttcccaagc atctagacac caagatggca tcacagccct
      721 tgaaagagag tgctgtcctg actccccgag tccctactct accaaagatg ggaagcgttg
      781 gagattggga ggtaacagtg gcgtctcagg aagccctggg tcctggcaga cacgctgaga
      841 aggagttctg caaggacccc ccaggagaca gctgtgggaa cggcctgccc ctgggagttc
      901 cagtttcaaa accaaccatc atctcccagc aagagcaagg accagaattt tggggtccaa
      961 gatttgtaaa ttctggacaa aagaaccctg aagattacag ctgggatact gagcaaacaa
     1021 aaccagctca ggcattggcc tggagggatt ccaaggcctg ggaagaacga tatcagtggg
     1081 acatggagga tgtgaaagta tcaggtgtgc actggagcta tgaggagact aagactttcc
     1141 tggcaatttt gagtgagtct cctttttctg aaaaactccg gacttgtcac cagaaccgcc
     1201 aggtgtaccg ggccattgca gagcggctga gggcacaggg cttcctgcgg accctggagc
     1261 agtgtcgcta cagggtcaaa aatctcctac ggaattaccg gaaagccaag agcagccacc
     1321 caccggggac ctgccccttc tatgaggagc tggaggccct ggtgagggct cggacggcca
     1381 tcagagcctc agatggccca ggagaggttg tggctctccc caggctgggg gacagtgata
     1441 tggaggtgga tgagcaggag gaagggggct gggagcctga ggaaacaacg gatgactgta
     1501 atggtgatga cagtcacctg gccactggag agttcgtcca cagacccagg attccagagg
     1561 gcccagctct gctccagagt cgtattgcag gtgtgcactg gggctacgag gagaccaagg
     1621 ccttcctgac cattctcagt gagtccccat tctctgagaa gcttcacact tgtcaccaga
     1681 acagccaggt gtaccgggcc attgcagagc ggctgtgtgc acagggcttc ctgcggaccc
     1741 tggagcagtg tcgctacaga ttcaaaaacc tccttcgaag ctaccgaaaa gccaagagca
     1801 gccacccacc tgggacctgc cccttctatg aggagctgga ctcgctgatg agggctcgga
     1861 ctgcggttag agacatgggg accagcaagg aggcagtggg tcttcctact tctggggaga
     1921 gtggtaccca ggttgtcaac caggaggcct gggatgaaat ggcaggtgaa gatgccatca
     1981 gatctccaac cccaggtcct aaaaccccag acactggttt tgagatgagg catgaggatg
     2041 aagaccagat ttcagagcaa gacatttttg aaggtttgcc tggagcctta tcaaagtgta
     2101 ctgcagagga ttgctaccct catgattggg gggaagacag tgaaaatgaa aacgaaggta
     2161 aagggcggtg gggaaatcca tcccaggatc agtgggaaga atgttcttct gaagaggact
     2221 tagaaaaact catcgatcat caaggcctgt accttgcaga gaaacccttc aagtgtgaca
     2281 cgtgcatgaa aaggttcagc cggaattcgc agttaatcgc ccaccagcgg atacacacag
     2341 gtgagaggcc ctacaaatgc cttgaatgtg ggaaaagctt tagtgaccgc tccaacttca
     2401 atacccatca gagaatccac actggagaga agccctacaa atgccttgaa tgtgggaaaa
     2461 gctttagtga ccactccaat ctcatcaccc accagagaac gcacacgagg gtgaaaccct
     2521 ataaatgtgg ggaatgttgg gaaggcttca cccagagctc aaaccttctg aaacatcaga
     2581 gaatccactt gggaggaaat cctgatcact gtggtgagcc tgggaaaaac tctggccaga
     2641 gcccatcctt tagtgctcac tggaggaact cagcagagga gacatctctg gaacaaactc
     2701 agagtgccag taagaacttg aattctcctg gactgcaaag caccaactca ggggataaac
     2761 tttatcagtg ttccgaatgt ggaagaagct tctccaagag ttctgccctc atcagtcacc
     2821 aaagaatcca cacgggagag aaaccatatg gatgtgccga atgtgggaaa agcttcagta
     2881 agagctccac tctggccaac caccagcgaa cccacactgg ggagaagccg tatgagtgtg
     2941 cggactgtgg gaaatgcttc ggggagcgtt ccaagctcat cacacaccag agggtgcaca
     3001 caggagagaa gccctacaga tgcctcgagt gtgggaagtt cttccgtgac cgttccaacc
     3061 tcattaccca ccagagaatc cacacaggag agaaacctta taagtgcaga gagtgtggga
     3121 aatgctttaa ccagagctcc agtcttatta ttcaccagag aatccacacc ggggagaaac
     3181 cctacaagtg tatggagtgt ggcaaagatt tcaacaacag ctcccacttc agtgcccaca
     3241 ggagaaccca tgcaggaggg aaggcgtcat aggagacaaa agagaaaaac gtatatttaa
     3301 atctcccaag atcctaagac atatgctaga aagaaactgt cccaattttt aagattagcg
     3361 tgtacctggg gaacttacct tggtacagtc caggtaattc ggaagtgaat tacaaatgct
     3421 aacgatccag atttgaaggc acttttctta agtgtaatgt gttttttctc ctgcaaaaaa
     3481 acccacacag tcctcaggct gcccttatat ttgctgttgt gtaagagctt tatcagtgtt
     3541 tgagccagac tggtaactga ggggattaga ggtaaatcag tgatcctgag cagtgattct
     3601 agacctttct gtgccttcac accatccaca tgtacacacg ccccatcagt gtatgttggc
     3661 aaattctcat atgtggccat tttccgttgg ggcataacct cctgggagaa ctttgagact
     3721 ctccagtgat gggggcataa ttgagaatca gtggcctaga gcagccacca tgagcttatc
     3781 aaagggtaga aacaacagtg acatcattac tagatcatta ttaataatag caaaagtagc
     3841 cagcatctat cgagctcttc agcaggcttt gtgctaagca ctttgtatac atcatctcat
     3901 ttactcctca cagcagcccc aggaggtact aatattttcc ccatttccca gaagagagaa
     3961 gtgacttgct tgggtcacac atctgaaaat ggcagaggca ggattcaacc agctctgtct
     4021 ctagggcctg aggtgctttc actgcttcac tgaatcccct ttcacattgg ggcaggtaac
     4081 tcaggtgcca aagcactttg tagaccacat tttctgttaa aattccctat gagttctgtc
     4141 tttaacaaat atggacattg agaatcccag aagattgaag gactggggat gttcagagtt
     4201 ggcaatgtgc tttgagcaag gctgaactca tcaaagcact tgatgtgaat ttccatcttc
     4261 acaataatat gggggagaga cagaggtgag ttgagattgg gaacaagaat gtagccaaag
     4321 tgatgtttct tccaatgaga tacagttttg gctaaggaaa tgggattttt aagaatttcc
     4381 cttattctca ggggggtcag ccctgcttcc tgttagactt ggctggatcg taggttgaac
     4441 cttaagaaac ctgggcttgc tggccagtgc tcacttaccc tggtgtgttg gccccctggc
     4501 cctttccctc caggcacagc agaagctttg cgccaaggct gaggcagaag tggggtggaa
     4561 ggagtggtgt gtgtggggtg ccgcggaggg ggctttgaag gctattgctt aatccaggtt
     4621 catggtgcac ttttactctg agccatcttg aaccagacct acccagcgct gtctaaatgt
     4681 tggccgtaaa gacctgcctc cagctccaac aggctcaatc agaaaggttc acacaggatg
     4741 gtttcctagt tcgcagcgct ttggcctcca ggatttctcc tcaggagggt taaacaatgt
     4801 tggccaagga ctatggtttc caaaggattt taaaggagca tccctctcct gacatccgcc
     4861 tatgataccg ggaatgccgt tcataccctg gctcgttcat caacttggga agtactatta
     4921 gatagtagat gtgagggaac cttgaagagt ggaactctgc atgtgaagca gtcagtgggg
     4981 agactggcgc tcccaccgac gcttatcaca ccttagtccc ttcctcggct tcccaagaac
     5041 ctgcttacct cggatcactg cctatcaccc ccttcccggt ttacctcttc tggctcacct
     5101 tacctctgag gagcagggcc tgtgagtgag ccctggcttt gaaccaccag gtgtcagtaa
     5161 ctgcaacagt aggatggtgg gtagggaagc acctgagcca agaggaagga tcctgcagga
     5221 agggaaggga ggtccaggga aagaccaagt ggtgtgaaat agcatggctt cagggtgggg
     5281 ctgggaccat aacttcttag ctctattggg gtttgtaaat gggagatgag gagtgttagc
     5341 tcagattaga agggtgtggg ggggcggtca tggaggaccc gtggctgctg agggggacat
     5401 ggtcagatgc gcggtgttga aacctaatag ctgaacagaa cctgcagtta ggacagcctg
     5461 ttgggacact gttgcaatat tccaggtaaa cgtgagggtc cgaactagag caggggtaac
     5521 gttgaagagg aggggatgat tcgagaggtt gcacaggtag aattgaggac agcagaggag
     5581 agccaggctg cctgggtggc tggtggagcc tgctgtcatt cagaactggg atcacaggag
     5641 gaggtggagg tagggcagga gggcagaaga tcagaagttt aatttgggcc attttggtta
     5701 gggacatcca agaggtgata cactacgaag caggcatttg gatatctggg cctgaagctg
     5761 gggggaggtt aggactagac agttatctgt atgcttggga gttaccttca tgttcaagtc
     5821 acagaaaggc tgggcccggg acagaactgg agaagcacca cgtgtagagg aagatgcccc
     5881 tcagaggaga tctagactac cccccagtcc caccacctcc tgagcactcc agccaacttt
     5941 cggacactgc ctcaatcgct gctgacaccg gaattgtcaa tgtagttctg aatttcctgg
     6001 aaccttccct gtagaagcca agctgagctc tgtgtagaag tgagataatg gccctctccc
     6061 ctcccaagca tcagccgttc ccctgctctt ggaagtgtgc tggtgtctca tgttctcaag
     6121 tgaacagttt tgatgtttat tacctattgg tcctttctcg taactcaggt tcagccatga
     6181 aatcgagggc attgtgggcc aggagagaaa gtggcccagg aggaccttct ctccttgtgt
     6241 acctgactct tcctttggaa gaagttccct ttcaggtggc ttccatgttt ggggcccgac
     6301 ccatcactct gccagggtac ccagacatcc ttcaacaggt ctttgctgct caaataaacc
     6361 gacat
//
LOCUS       XM_032611690            6376 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and SCAN domain containing 20
            (ZSCAN20), transcript variant X4, mRNA.
ACCESSION   XM_032611690
VERSION     XM_032611690.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6376
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6376
                     /gene="ZSCAN20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743287"
     CDS             86..3283
                     /gene="ZSCAN20"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     20 isoform X2"
                     /protein_id="XP_032467581.1"
                     /db_xref="GeneID:116743287"
                     /translation="MQEDAGQGRPAERRHPGETMAVALEARAQASPLPEPEELLIVKL
                     EEDSCRPDSQPREKDHDPVPGPEASRQRFRQFRYRDAAGPHEAFSQLWALCCHWLRPE
                     IRLKEQILELLVLEQFLTILPREVQAWVQARHPESGEEAVALVEDWHREARAAGQREL
                     ELCAEETRSLKTVKESQSFQLWTADHWPEGQSQKQWVKNPCPDLPKHLDTKMASQPLK
                     ESAVLTPRVPTLPKMGSVGDWEVTVASQEALGPGRHAEKEFCKDPPGDSCGNGLPLGV
                     PVSKPTIISQQEQGPEFWGPRFVNSGQKNPEDYSWDTEQTKPAQALAWRDSKAWEERY
                     QWDMEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRAQGFL
                     RTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVRARTAIRASDGPGEVVALP
                     RLGDSDMEVDEQEEGGWEPEETTDDCNGDDSHLATGEFVHRPRIPEGPALLQSRIGVH
                     WGYEETKAFLTILSESPFSEKLHTCHQNSQVYRAIAERLCAQGFLRTLEQCRYRFKNL
                     LRSYRKAKSSHPPGTCPFYEELDSLMRARTAVRDMGTSKEAVGLPTSGESGTQVVNQE
                     AWDEMAGEDAIRSPTPGPKTPDTGFEMRHEDEDQISEQDIFEGLPGALSKCTAEDCYP
                     HDWGEDSENENEGKGRWGNPSQDQWEECSSEEDLEKLIDHQGLYLAEKPFKCDTCMKR
                     FSRNSQLIAHQRIHTGERPYKCLECGKSFSDRSNFNTHQRIHTGEKPYKCLECGKSFS
                     DHSNLITHQRTHTRVKPYKCGECWEGFTQSSNLLKHQRIHLGGNPDHCGEPGKNSGQS
                     PSFSAHWRNSAEETSLEQTQSASKNLNSPGLQSTNSGDKLYQCSECGRSFSKSSALIS
                     HQRIHTGEKPYGCAECGKSFSKSSTLANHQRTHTGEKPYECADCGKCFGERSKLITHQ
                     RVHTGEKPYRCLECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLIIHQRI
                     HTGEKPYKCMECGKDFNNSSHFSAHRRTHAGGKAS"
     misc_feature    323..559
                     /gene="ZSCAN20"
                     /note="leucine rich region; Region: SCAN; smart00431"
                     /db_xref="CDD:128708"
     misc_feature    1118..1363
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    1601..1846
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    2246..>3238
                     /gene="ZSCAN20"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2285..2347
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2285..2287,2294..2296,2333..2335,2345..2347)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2300..2302,2306..2308,2312..2314,2318..2323,
                     2330..2335,2342..2344,2384..2386,2390..2392,2402..2407,
                     2414..2419,2426..2428,2468..2470,2474..2476,2480..2482,
                     2486..2491,2498..2503,2510..2512)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2369..2431
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2453..2515
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2537..2599
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2780..2842
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2780..2782,2789..2791,2828..2830,2840..2842)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2864..2926
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2948..3010
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2948..2950,2957..2959,2996..2998,3008..3010)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3032..3094
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3032..3034,3041..3043,3080..3082,3092..3094)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3047..3049,3053..3055,3059..3061,3065..3070,
                     3077..3082,3089..3091,3131..3133,3137..3139,3149..3154,
                     3161..3166,3173..3175,3215..3217,3221..3223,3227..3229,
                     3233..3238,3245..3250,3257..3259)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3116..3178
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3200..3262
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cttccgccct gttgtgaagt gggtgtctcg gtggaggctg ggggagcatt tcctctccca
       61 ggagcccctt gaggacacac tacagatgca ggaagacgct ggacaaggac ggccagctga
      121 aaggaggcat ccaggagaga ccatggctgt agccctggaa gcccgggccc aggcctcccc
      181 gctcccagag cctgaagaac tcttgattgt caagctggag gaggactcgt gcagaccaga
      241 ctcccaaccc cgggagaagg accatgaccc tgtccctggc cccgaggcct cccgccagcg
      301 cttcaggcag ttccggtaca gggatgcggc gggaccccat gaggccttca gccagctctg
      361 ggcactctgc tgtcactggc tgaggccgga gatccgcctc aaagagcaga tactggagtt
      421 gctggtgctg gagcagttcc tgactatctt acccagggag gtccaggcct gggtacaggc
      481 acgccatcct gagagcggcg aggaggcagt ggccctggtg gaggattggc accgagaggc
      541 gcgggccgcg ggacagcggg aactggaact gtgtgcagaa gagaccaggt ccttaaagac
      601 agtgaaggaa tctcagagct tccagctgtg gacagcagat cactggcccg agggacagtc
      661 ccagaaacag tgggtgaaga atccatgtcc tgaccttccc aagcatctag acaccaagat
      721 ggcatcacag cccttgaaag agagtgctgt cctgactccc cgagtcccta ctctaccaaa
      781 gatgggaagc gttggagatt gggaggtaac agtggcgtct caggaagccc tgggtcctgg
      841 cagacacgct gagaaggagt tctgcaagga ccccccagga gacagctgtg ggaacggcct
      901 gcccctggga gttccagttt caaaaccaac catcatctcc cagcaagagc aaggaccaga
      961 attttggggt ccaagatttg taaattctgg acaaaagaac cctgaagatt acagctggga
     1021 tactgagcaa acaaaaccag ctcaggcatt ggcctggagg gattccaagg cctgggaaga
     1081 acgatatcag tgggacatgg aggatgtgaa agtatcaggt gtgcactgga gctatgagga
     1141 gactaagact ttcctggcaa ttttgagtga gtctcctttt tctgaaaaac tccggacttg
     1201 tcaccagaac cgccaggtgt accgggccat tgcagagcgg ctgagggcac agggcttcct
     1261 gcggaccctg gagcagtgtc gctacagggt caaaaatctc ctacggaatt accggaaagc
     1321 caagagcagc cacccaccgg ggacctgccc cttctatgag gagctggagg ccctggtgag
     1381 ggctcggacg gccatcagag cctcagatgg cccaggagag gttgtggctc tccccaggct
     1441 gggggacagt gatatggagg tggatgagca ggaggaaggg ggctgggagc ctgaggaaac
     1501 aacggatgac tgtaatggtg atgacagtca cctggccact ggagagttcg tccacagacc
     1561 caggattcca gagggcccag ctctgctcca gagtcgtatt ggtgtgcact ggggctacga
     1621 ggagaccaag gccttcctga ccattctcag tgagtcccca ttctctgaga agcttcacac
     1681 ttgtcaccag aacagccagg tgtaccgggc cattgcagag cggctgtgtg cacagggctt
     1741 cctgcggacc ctggagcagt gtcgctacag attcaaaaac ctccttcgaa gctaccgaaa
     1801 agccaagagc agccacccac ctgggacctg ccccttctat gaggagctgg actcgctgat
     1861 gagggctcgg actgcggtta gagacatggg gaccagcaag gaggcagtgg gtcttcctac
     1921 ttctggggag agtggtaccc aggttgtcaa ccaggaggcc tgggatgaaa tggcaggtga
     1981 agatgccatc agatctccaa ccccaggtcc taaaacccca gacactggtt ttgagatgag
     2041 gcatgaggat gaagaccaga tttcagagca agacattttt gaaggtttgc ctggagcctt
     2101 atcaaagtgt actgcagagg attgctaccc tcatgattgg ggggaagaca gtgaaaatga
     2161 aaacgaaggt aaagggcggt ggggaaatcc atcccaggat cagtgggaag aatgttcttc
     2221 tgaagaggac ttagaaaaac tcatcgatca tcaaggcctg taccttgcag agaaaccctt
     2281 caagtgtgac acgtgcatga aaaggttcag ccggaattcg cagttaatcg cccaccagcg
     2341 gatacacaca ggtgagaggc cctacaaatg ccttgaatgt gggaaaagct ttagtgaccg
     2401 ctccaacttc aatacccatc agagaatcca cactggagag aagccctaca aatgccttga
     2461 atgtgggaaa agctttagtg accactccaa tctcatcacc caccagagaa cgcacacgag
     2521 ggtgaaaccc tataaatgtg gggaatgttg ggaaggcttc acccagagct caaaccttct
     2581 gaaacatcag agaatccact tgggaggaaa tcctgatcac tgtggtgagc ctgggaaaaa
     2641 ctctggccag agcccatcct ttagtgctca ctggaggaac tcagcagagg agacatctct
     2701 ggaacaaact cagagtgcca gtaagaactt gaattctcct ggactgcaaa gcaccaactc
     2761 aggggataaa ctttatcagt gttccgaatg tggaagaagc ttctccaaga gttctgccct
     2821 catcagtcac caaagaatcc acacgggaga gaaaccatat ggatgtgccg aatgtgggaa
     2881 aagcttcagt aagagctcca ctctggccaa ccaccagcga acccacactg gggagaagcc
     2941 gtatgagtgt gcggactgtg ggaaatgctt cggggagcgt tccaagctca tcacacacca
     3001 gagggtgcac acaggagaga agccctacag atgcctcgag tgtgggaagt tcttccgtga
     3061 ccgttccaac ctcattaccc accagagaat ccacacagga gagaaacctt ataagtgcag
     3121 agagtgtggg aaatgcttta accagagctc cagtcttatt attcaccaga gaatccacac
     3181 cggggagaaa ccctacaagt gtatggagtg tggcaaagat ttcaacaaca gctcccactt
     3241 cagtgcccac aggagaaccc atgcaggagg gaaggcgtca taggagacaa aagagaaaaa
     3301 cgtatattta aatctcccaa gatcctaaga catatgctag aaagaaactg tcccaatttt
     3361 taagattagc gtgtacctgg ggaacttacc ttggtacagt ccaggtaatt cggaagtgaa
     3421 ttacaaatgc taacgatcca gatttgaagg cacttttctt aagtgtaatg tgttttttct
     3481 cctgcaaaaa aacccacaca gtcctcaggc tgcccttata tttgctgttg tgtaagagct
     3541 ttatcagtgt ttgagccaga ctggtaactg aggggattag aggtaaatca gtgatcctga
     3601 gcagtgattc tagacctttc tgtgccttca caccatccac atgtacacac gccccatcag
     3661 tgtatgttgg caaattctca tatgtggcca ttttccgttg gggcataacc tcctgggaga
     3721 actttgagac tctccagtga tgggggcata attgagaatc agtggcctag agcagccacc
     3781 atgagcttat caaagggtag aaacaacagt gacatcatta ctagatcatt attaataata
     3841 gcaaaagtag ccagcatcta tcgagctctt cagcaggctt tgtgctaagc actttgtata
     3901 catcatctca tttactcctc acagcagccc caggaggtac taatattttc cccatttccc
     3961 agaagagaga agtgacttgc ttgggtcaca catctgaaaa tggcagaggc aggattcaac
     4021 cagctctgtc tctagggcct gaggtgcttt cactgcttca ctgaatcccc tttcacattg
     4081 gggcaggtaa ctcaggtgcc aaagcacttt gtagaccaca ttttctgtta aaattcccta
     4141 tgagttctgt ctttaacaaa tatggacatt gagaatccca gaagattgaa ggactgggga
     4201 tgttcagagt tggcaatgtg ctttgagcaa ggctgaactc atcaaagcac ttgatgtgaa
     4261 tttccatctt cacaataata tgggggagag acagaggtga gttgagattg ggaacaagaa
     4321 tgtagccaaa gtgatgtttc ttccaatgag atacagtttt ggctaaggaa atgggatttt
     4381 taagaatttc ccttattctc aggggggtca gccctgcttc ctgttagact tggctggatc
     4441 gtaggttgaa ccttaagaaa cctgggcttg ctggccagtg ctcacttacc ctggtgtgtt
     4501 ggccccctgg ccctttccct ccaggcacag cagaagcttt gcgccaaggc tgaggcagaa
     4561 gtggggtgga aggagtggtg tgtgtggggt gccgcggagg gggctttgaa ggctattgct
     4621 taatccaggt tcatggtgca cttttactct gagccatctt gaaccagacc tacccagcgc
     4681 tgtctaaatg ttggccgtaa agacctgcct ccagctccaa caggctcaat cagaaaggtt
     4741 cacacaggat ggtttcctag ttcgcagcgc tttggcctcc aggatttctc ctcaggaggg
     4801 ttaaacaatg ttggccaagg actatggttt ccaaaggatt ttaaaggagc atccctctcc
     4861 tgacatccgc ctatgatacc gggaatgccg ttcataccct ggctcgttca tcaacttggg
     4921 aagtactatt agatagtaga tgtgagggaa ccttgaagag tggaactctg catgtgaagc
     4981 agtcagtggg gagactggcg ctcccaccga cgcttatcac accttagtcc cttcctcggc
     5041 ttcccaagaa cctgcttacc tcggatcact gcctatcacc cccttcccgg tttacctctt
     5101 ctggctcacc ttacctctga ggagcagggc ctgtgagtga gccctggctt tgaaccacca
     5161 ggtgtcagta actgcaacag taggatggtg ggtagggaag cacctgagcc aagaggaagg
     5221 atcctgcagg aagggaaggg aggtccaggg aaagaccaag tggtgtgaaa tagcatggct
     5281 tcagggtggg gctgggacca taacttctta gctctattgg ggtttgtaaa tgggagatga
     5341 ggagtgttag ctcagattag aagggtgtgg gggggcggtc atggaggacc cgtggctgct
     5401 gagggggaca tggtcagatg cgcggtgttg aaacctaata gctgaacaga acctgcagtt
     5461 aggacagcct gttgggacac tgttgcaata ttccaggtaa acgtgagggt ccgaactaga
     5521 gcaggggtaa cgttgaagag gaggggatga ttcgagaggt tgcacaggta gaattgagga
     5581 cagcagagga gagccaggct gcctgggtgg ctggtggagc ctgctgtcat tcagaactgg
     5641 gatcacagga ggaggtggag gtagggcagg agggcagaag atcagaagtt taatttgggc
     5701 cattttggtt agggacatcc aagaggtgat acactacgaa gcaggcattt ggatatctgg
     5761 gcctgaagct ggggggaggt taggactaga cagttatctg tatgcttggg agttaccttc
     5821 atgttcaagt cacagaaagg ctgggcccgg gacagaactg gagaagcacc acgtgtagag
     5881 gaagatgccc ctcagaggag atctagacta ccccccagtc ccaccacctc ctgagcactc
     5941 cagccaactt tcggacactg cctcaatcgc tgctgacacc ggaattgtca atgtagttct
     6001 gaatttcctg gaaccttccc tgtagaagcc aagctgagct ctgtgtagaa gtgagataat
     6061 ggccctctcc cctcccaagc atcagccgtt cccctgctct tggaagtgtg ctggtgtctc
     6121 atgttctcaa gtgaacagtt ttgatgttta ttacctattg gtcctttctc gtaactcagg
     6181 ttcagccatg aaatcgaggg cattgtgggc caggagagaa agtggcccag gaggaccttc
     6241 tctccttgtg tacctgactc ttcctttgga agaagttccc tttcaggtgg cttccatgtt
     6301 tggggcccga cccatcactc tgccagggta cccagacatc cttcaacagg tctttgctgc
     6361 tcaaataaac cgacat
//
LOCUS       XM_032611694            5950 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and SCAN domain containing 20
            (ZSCAN20), transcript variant X5, mRNA.
ACCESSION   XM_032611694
VERSION     XM_032611694.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5950
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5950
                     /gene="ZSCAN20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743287"
     CDS             86..2857
                     /gene="ZSCAN20"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     20 isoform X3"
                     /protein_id="XP_032467585.1"
                     /db_xref="GeneID:116743287"
                     /translation="MQEDAGQGRPAERRHPGETMAVALEARAQASPLPEPEELLIVKL
                     EEDSCRPDSQPREKDHDPVPGPEASRQRFRQFRYRDAAGPHEAFSQLWALCCHWLRPE
                     IRLKEQILELLVLEQFLTILPREVQAWVQARHPESGEEAVALVEDWHREARAAGQREL
                     ELCAEETRSLKTVKESQSFQLWTADHWPEGQSQKQWVKNPCPDLPKHLDTKMASQPLK
                     ESAVLTPRVPTLPKMGSVGDWEVTVASQEALGPGRHAEKEFCKDPPGDSCGNGLPLGV
                     PVSKPTIISQQEQGPEFWGPRFVNSGQKNPEDYSWDTEQTKPAQALAWRDSKAWEERY
                     QWDMEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRAQGFL
                     RTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVRARTAIRASDGPGEVVALP
                     RLGDSDMEVDEQEEGGWEPEETTDDCNGDDSHLATGEFVHRPRIPEGPALLQSRIGFE
                     MRHEDEDQISEQDIFEGLPGALSKCTAEDCYPHDWGEDSENENEGKGRWGNPSQDQWE
                     ECSSEEDLEKLIDHQGLYLAEKPFKCDTCMKRFSRNSQLIAHQRIHTGERPYKCLECG
                     KSFSDRSNFNTHQRIHTGEKPYKCLECGKSFSDHSNLITHQRTHTRVKPYKCGECWEG
                     FTQSSNLLKHQRIHLGGNPDHCGEPGKNSGQSPSFSAHWRNSAEETSLEQTQSASKNL
                     NSPGLQSTNSGDKLYQCSECGRSFSKSSALISHQRIHTGEKPYGCAECGKSFSKSSTL
                     ANHQRTHTGEKPYECADCGKCFGERSKLITHQRVHTGEKPYRCLECGKFFRDRSNLIT
                     HQRIHTGEKPYKCRECGKCFNQSSSLIIHQRIHTGEKPYKCMECGKDFNNSSHFSAHR
                     RTHAGGKAS"
     misc_feature    323..559
                     /gene="ZSCAN20"
                     /note="leucine rich region; Region: SCAN; smart00431"
                     /db_xref="CDD:128708"
     misc_feature    1118..1363
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    1820..>2812
                     /gene="ZSCAN20"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1859..1921
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1859..1861,1868..1870,1907..1909,1919..1921)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1874..1876,1880..1882,1886..1888,1892..1897,
                     1904..1909,1916..1918,1958..1960,1964..1966,1976..1981,
                     1988..1993,2000..2002,2042..2044,2048..2050,2054..2056,
                     2060..2065,2072..2077,2084..2086)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1943..2005
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2027..2089
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2111..2173
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2354..2416
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2354..2356,2363..2365,2402..2404,2414..2416)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2438..2500
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2522..2584
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2522..2524,2531..2533,2570..2572,2582..2584)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2606..2668
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2606..2608,2615..2617,2654..2656,2666..2668)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2621..2623,2627..2629,2633..2635,2639..2644,
                     2651..2656,2663..2665,2705..2707,2711..2713,2723..2728,
                     2735..2740,2747..2749,2789..2791,2795..2797,2801..2803,
                     2807..2812,2819..2824,2831..2833)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2690..2752
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2774..2836
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cttccgccct gttgtgaagt gggtgtctcg gtggaggctg ggggagcatt tcctctccca
       61 ggagcccctt gaggacacac tacagatgca ggaagacgct ggacaaggac ggccagctga
      121 aaggaggcat ccaggagaga ccatggctgt agccctggaa gcccgggccc aggcctcccc
      181 gctcccagag cctgaagaac tcttgattgt caagctggag gaggactcgt gcagaccaga
      241 ctcccaaccc cgggagaagg accatgaccc tgtccctggc cccgaggcct cccgccagcg
      301 cttcaggcag ttccggtaca gggatgcggc gggaccccat gaggccttca gccagctctg
      361 ggcactctgc tgtcactggc tgaggccgga gatccgcctc aaagagcaga tactggagtt
      421 gctggtgctg gagcagttcc tgactatctt acccagggag gtccaggcct gggtacaggc
      481 acgccatcct gagagcggcg aggaggcagt ggccctggtg gaggattggc accgagaggc
      541 gcgggccgcg ggacagcggg aactggaact gtgtgcagaa gagaccaggt ccttaaagac
      601 agtgaaggaa tctcagagct tccagctgtg gacagcagat cactggcccg agggacagtc
      661 ccagaaacag tgggtgaaga atccatgtcc tgaccttccc aagcatctag acaccaagat
      721 ggcatcacag cccttgaaag agagtgctgt cctgactccc cgagtcccta ctctaccaaa
      781 gatgggaagc gttggagatt gggaggtaac agtggcgtct caggaagccc tgggtcctgg
      841 cagacacgct gagaaggagt tctgcaagga ccccccagga gacagctgtg ggaacggcct
      901 gcccctggga gttccagttt caaaaccaac catcatctcc cagcaagagc aaggaccaga
      961 attttggggt ccaagatttg taaattctgg acaaaagaac cctgaagatt acagctggga
     1021 tactgagcaa acaaaaccag ctcaggcatt ggcctggagg gattccaagg cctgggaaga
     1081 acgatatcag tgggacatgg aggatgtgaa agtatcaggt gtgcactgga gctatgagga
     1141 gactaagact ttcctggcaa ttttgagtga gtctcctttt tctgaaaaac tccggacttg
     1201 tcaccagaac cgccaggtgt accgggccat tgcagagcgg ctgagggcac agggcttcct
     1261 gcggaccctg gagcagtgtc gctacagggt caaaaatctc ctacggaatt accggaaagc
     1321 caagagcagc cacccaccgg ggacctgccc cttctatgag gagctggagg ccctggtgag
     1381 ggctcggacg gccatcagag cctcagatgg cccaggagag gttgtggctc tccccaggct
     1441 gggggacagt gatatggagg tggatgagca ggaggaaggg ggctgggagc ctgaggaaac
     1501 aacggatgac tgtaatggtg atgacagtca cctggccact ggagagttcg tccacagacc
     1561 caggattcca gagggcccag ctctgctcca gagtcgtatt ggttttgaga tgaggcatga
     1621 ggatgaagac cagatttcag agcaagacat ttttgaaggt ttgcctggag ccttatcaaa
     1681 gtgtactgca gaggattgct accctcatga ttggggggaa gacagtgaaa atgaaaacga
     1741 aggtaaaggg cggtggggaa atccatccca ggatcagtgg gaagaatgtt cttctgaaga
     1801 ggacttagaa aaactcatcg atcatcaagg cctgtacctt gcagagaaac ccttcaagtg
     1861 tgacacgtgc atgaaaaggt tcagccggaa ttcgcagtta atcgcccacc agcggataca
     1921 cacaggtgag aggccctaca aatgccttga atgtgggaaa agctttagtg accgctccaa
     1981 cttcaatacc catcagagaa tccacactgg agagaagccc tacaaatgcc ttgaatgtgg
     2041 gaaaagcttt agtgaccact ccaatctcat cacccaccag agaacgcaca cgagggtgaa
     2101 accctataaa tgtggggaat gttgggaagg cttcacccag agctcaaacc ttctgaaaca
     2161 tcagagaatc cacttgggag gaaatcctga tcactgtggt gagcctggga aaaactctgg
     2221 ccagagccca tcctttagtg ctcactggag gaactcagca gaggagacat ctctggaaca
     2281 aactcagagt gccagtaaga acttgaattc tcctggactg caaagcacca actcagggga
     2341 taaactttat cagtgttccg aatgtggaag aagcttctcc aagagttctg ccctcatcag
     2401 tcaccaaaga atccacacgg gagagaaacc atatggatgt gccgaatgtg ggaaaagctt
     2461 cagtaagagc tccactctgg ccaaccacca gcgaacccac actggggaga agccgtatga
     2521 gtgtgcggac tgtgggaaat gcttcgggga gcgttccaag ctcatcacac accagagggt
     2581 gcacacagga gagaagccct acagatgcct cgagtgtggg aagttcttcc gtgaccgttc
     2641 caacctcatt acccaccaga gaatccacac aggagagaaa ccttataagt gcagagagtg
     2701 tgggaaatgc tttaaccaga gctccagtct tattattcac cagagaatcc acaccgggga
     2761 gaaaccctac aagtgtatgg agtgtggcaa agatttcaac aacagctccc acttcagtgc
     2821 ccacaggaga acccatgcag gagggaaggc gtcataggag acaaaagaga aaaacgtata
     2881 tttaaatctc ccaagatcct aagacatatg ctagaaagaa actgtcccaa tttttaagat
     2941 tagcgtgtac ctggggaact taccttggta cagtccaggt aattcggaag tgaattacaa
     3001 atgctaacga tccagatttg aaggcacttt tcttaagtgt aatgtgtttt ttctcctgca
     3061 aaaaaaccca cacagtcctc aggctgccct tatatttgct gttgtgtaag agctttatca
     3121 gtgtttgagc cagactggta actgagggga ttagaggtaa atcagtgatc ctgagcagtg
     3181 attctagacc tttctgtgcc ttcacaccat ccacatgtac acacgcccca tcagtgtatg
     3241 ttggcaaatt ctcatatgtg gccattttcc gttggggcat aacctcctgg gagaactttg
     3301 agactctcca gtgatggggg cataattgag aatcagtggc ctagagcagc caccatgagc
     3361 ttatcaaagg gtagaaacaa cagtgacatc attactagat cattattaat aatagcaaaa
     3421 gtagccagca tctatcgagc tcttcagcag gctttgtgct aagcactttg tatacatcat
     3481 ctcatttact cctcacagca gccccaggag gtactaatat tttccccatt tcccagaaga
     3541 gagaagtgac ttgcttgggt cacacatctg aaaatggcag aggcaggatt caaccagctc
     3601 tgtctctagg gcctgaggtg ctttcactgc ttcactgaat cccctttcac attggggcag
     3661 gtaactcagg tgccaaagca ctttgtagac cacattttct gttaaaattc cctatgagtt
     3721 ctgtctttaa caaatatgga cattgagaat cccagaagat tgaaggactg gggatgttca
     3781 gagttggcaa tgtgctttga gcaaggctga actcatcaaa gcacttgatg tgaatttcca
     3841 tcttcacaat aatatggggg agagacagag gtgagttgag attgggaaca agaatgtagc
     3901 caaagtgatg tttcttccaa tgagatacag ttttggctaa ggaaatggga tttttaagaa
     3961 tttcccttat tctcaggggg gtcagccctg cttcctgtta gacttggctg gatcgtaggt
     4021 tgaaccttaa gaaacctggg cttgctggcc agtgctcact taccctggtg tgttggcccc
     4081 ctggcccttt ccctccaggc acagcagaag ctttgcgcca aggctgaggc agaagtgggg
     4141 tggaaggagt ggtgtgtgtg gggtgccgcg gagggggctt tgaaggctat tgcttaatcc
     4201 aggttcatgg tgcactttta ctctgagcca tcttgaacca gacctaccca gcgctgtcta
     4261 aatgttggcc gtaaagacct gcctccagct ccaacaggct caatcagaaa ggttcacaca
     4321 ggatggtttc ctagttcgca gcgctttggc ctccaggatt tctcctcagg agggttaaac
     4381 aatgttggcc aaggactatg gtttccaaag gattttaaag gagcatccct ctcctgacat
     4441 ccgcctatga taccgggaat gccgttcata ccctggctcg ttcatcaact tgggaagtac
     4501 tattagatag tagatgtgag ggaaccttga agagtggaac tctgcatgtg aagcagtcag
     4561 tggggagact ggcgctccca ccgacgctta tcacacctta gtcccttcct cggcttccca
     4621 agaacctgct tacctcggat cactgcctat cacccccttc ccggtttacc tcttctggct
     4681 caccttacct ctgaggagca gggcctgtga gtgagccctg gctttgaacc accaggtgtc
     4741 agtaactgca acagtaggat ggtgggtagg gaagcacctg agccaagagg aaggatcctg
     4801 caggaaggga agggaggtcc agggaaagac caagtggtgt gaaatagcat ggcttcaggg
     4861 tggggctggg accataactt cttagctcta ttggggtttg taaatgggag atgaggagtg
     4921 ttagctcaga ttagaagggt gtgggggggc ggtcatggag gacccgtggc tgctgagggg
     4981 gacatggtca gatgcgcggt gttgaaacct aatagctgaa cagaacctgc agttaggaca
     5041 gcctgttggg acactgttgc aatattccag gtaaacgtga gggtccgaac tagagcaggg
     5101 gtaacgttga agaggagggg atgattcgag aggttgcaca ggtagaattg aggacagcag
     5161 aggagagcca ggctgcctgg gtggctggtg gagcctgctg tcattcagaa ctgggatcac
     5221 aggaggaggt ggaggtaggg caggagggca gaagatcaga agtttaattt gggccatttt
     5281 ggttagggac atccaagagg tgatacacta cgaagcaggc atttggatat ctgggcctga
     5341 agctgggggg aggttaggac tagacagtta tctgtatgct tgggagttac cttcatgttc
     5401 aagtcacaga aaggctgggc ccgggacaga actggagaag caccacgtgt agaggaagat
     5461 gcccctcaga ggagatctag actacccccc agtcccacca cctcctgagc actccagcca
     5521 actttcggac actgcctcaa tcgctgctga caccggaatt gtcaatgtag ttctgaattt
     5581 cctggaacct tccctgtaga agccaagctg agctctgtgt agaagtgaga taatggccct
     5641 ctcccctccc aagcatcagc cgttcccctg ctcttggaag tgtgctggtg tctcatgttc
     5701 tcaagtgaac agttttgatg tttattacct attggtcctt tctcgtaact caggttcagc
     5761 catgaaatcg agggcattgt gggccaggag agaaagtggc ccaggaggac cttctctcct
     5821 tgtgtacctg actcttcctt tggaagaagt tccctttcag gtggcttcca tgtttggggc
     5881 ccgacccatc actctgccag ggtacccaga catccttcaa caggtctttg ctgctcaaat
     5941 aaaccgacat
//
LOCUS       XM_032611697            6207 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger and SCAN domain containing 20
            (ZSCAN20), transcript variant X6, mRNA.
ACCESSION   XM_032611697
VERSION     XM_032611697.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6207
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6207
                     /gene="ZSCAN20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743287"
     CDS             547..3114
                     /gene="ZSCAN20"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     20 isoform X4"
                     /protein_id="XP_032467588.1"
                     /db_xref="GeneID:116743287"
                     /translation="MASQPLKESAVLTPRVPTLPKMGSVGDWEVTVASQEALGPGRHA
                     EKEFCKDPPGDSCGNGLPLGVPVSKPTIISQQEQGPEFWGPRFVNSGQKNPEDYSWDT
                     EQTKPAQALAWRDSKAWEERYQWDMEDVKVSGVHWSYEETKTFLAILSESPFSEKLRT
                     CHQNRQVYRAIAERLRAQGFLRTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEA
                     LVRARTAIRASDGPGEVVALPRLGDSDMEVDEQEEGGWEPEETTDDCNGDDSHLATGE
                     FVHRPRIPEGPALLQSRIAGVHWGYEETKAFLTILSESPFSEKLHTCHQNSQVYRAIA
                     ERLCAQGFLRTLEQCRYRFKNLLRSYRKAKSSHPPGTCPFYEELDSLMRARTAVRDMG
                     TSKEAVGLPTSGESGTQVVNQEAWDEMAGEDAIRSPTPGPKTPDTGFEMRHEDEDQIS
                     EQDIFEGLPGALSKCTAEDCYPHDWGEDSENENEGKGRWGNPSQDQWEECSSEEDLEK
                     LIDHQGLYLAEKPFKCDTCMKRFSRNSQLIAHQRIHTGERPYKCLECGKSFSDRSNFN
                     THQRIHTGEKPYKCLECGKSFSDHSNLITHQRTHTRVKPYKCGECWEGFTQSSNLLKH
                     QRIHLGGNPDHCGEPGKNSGQSPSFSAHWRNSAEETSLEQTQSASKNLNSPGLQSTNS
                     GDKLYQCSECGRSFSKSSALISHQRIHTGEKPYGCAECGKSFSKSSTLANHQRTHTGE
                     KPYECADCGKCFGERSKLITHQRVHTGEKPYRCLECGKFFRDRSNLITHQRIHTGEKP
                     YKCRECGKCFNQSSSLIIHQRIHTGEKPYKCMECGKDFNNSSHFSAHRRTHAGGKAS"
     misc_feature    946..1191
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    1432..1677
                     /gene="ZSCAN20"
                     /note="Myb/SANT-like DNA-binding domain; Region:
                     Myb_DNA-bind_4; pfam13837"
                     /db_xref="CDD:463994"
     misc_feature    2077..>3069
                     /gene="ZSCAN20"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2116..2178
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2116..2118,2125..2127,2164..2166,2176..2178)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2131..2133,2137..2139,2143..2145,2149..2154,
                     2161..2166,2173..2175,2215..2217,2221..2223,2233..2238,
                     2245..2250,2257..2259,2299..2301,2305..2307,2311..2313,
                     2317..2322,2329..2334,2341..2343)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2200..2262
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2284..2346
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2368..2430
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2611..2673
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2611..2613,2620..2622,2659..2661,2671..2673)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2695..2757
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2779..2841
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2779..2781,2788..2790,2827..2829,2839..2841)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2863..2925
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2863..2865,2872..2874,2911..2913,2923..2925)
                     /gene="ZSCAN20"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2878..2880,2884..2886,2890..2892,2896..2901,
                     2908..2913,2920..2922,2962..2964,2968..2970,2980..2985,
                     2992..2997,3004..3006,3046..3048,3052..3054,3058..3060,
                     3064..3069,3076..3081,3088..3090)
                     /gene="ZSCAN20"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2947..3009
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3031..3093
                     /gene="ZSCAN20"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtgtaaaaat ggggaaaata agaaaatata tttatagttg catgtatata aagaaacttg
       61 aaaggatgca gaagaaccgt gtttacctgt ggtgaggagt ccaggaagat actggacagg
      121 tggaatggag acaggtgggg atggggtatt ttcactgatt atatccttgt gtatattttc
      181 tatttttgaa cgatgtgagt attgaaaatg cctattgaaa aaattgtaat acttttttta
      241 aagttaggtg tttctatgac acaatgagat tgttctgttg ttggggtttt agggccagga
      301 aataacatct caaccactgc ctctgaattt ggaacctatt gagagagaga taagaaatta
      361 gctttatgat tgatagagct gaattgggaa ctggaactgt gtgcagaaga gaccaggtcc
      421 ttaaagacag tgaaggaatc tcagagcttc cagctgtgga cagcagatca ctggcccgag
      481 ggacagtccc agaaacagtg ggtgaagaat ccatgtcctg accttcccaa gcatctagac
      541 accaagatgg catcacagcc cttgaaagag agtgctgtcc tgactccccg agtccctact
      601 ctaccaaaga tgggaagcgt tggagattgg gaggtaacag tggcgtctca ggaagccctg
      661 ggtcctggca gacacgctga gaaggagttc tgcaaggacc ccccaggaga cagctgtggg
      721 aacggcctgc ccctgggagt tccagtttca aaaccaacca tcatctccca gcaagagcaa
      781 ggaccagaat tttggggtcc aagatttgta aattctggac aaaagaaccc tgaagattac
      841 agctgggata ctgagcaaac aaaaccagct caggcattgg cctggaggga ttccaaggcc
      901 tgggaagaac gatatcagtg ggacatggag gatgtgaaag tatcaggtgt gcactggagc
      961 tatgaggaga ctaagacttt cctggcaatt ttgagtgagt ctcctttttc tgaaaaactc
     1021 cggacttgtc accagaaccg ccaggtgtac cgggccattg cagagcggct gagggcacag
     1081 ggcttcctgc ggaccctgga gcagtgtcgc tacagggtca aaaatctcct acggaattac
     1141 cggaaagcca agagcagcca cccaccgggg acctgcccct tctatgagga gctggaggcc
     1201 ctggtgaggg ctcggacggc catcagagcc tcagatggcc caggagaggt tgtggctctc
     1261 cccaggctgg gggacagtga tatggaggtg gatgagcagg aggaaggggg ctgggagcct
     1321 gaggaaacaa cggatgactg taatggtgat gacagtcacc tggccactgg agagttcgtc
     1381 cacagaccca ggattccaga gggcccagct ctgctccaga gtcgtattgc aggtgtgcac
     1441 tggggctacg aggagaccaa ggccttcctg accattctca gtgagtcccc attctctgag
     1501 aagcttcaca cttgtcacca gaacagccag gtgtaccggg ccattgcaga gcggctgtgt
     1561 gcacagggct tcctgcggac cctggagcag tgtcgctaca gattcaaaaa cctccttcga
     1621 agctaccgaa aagccaagag cagccaccca cctgggacct gccccttcta tgaggagctg
     1681 gactcgctga tgagggctcg gactgcggtt agagacatgg ggaccagcaa ggaggcagtg
     1741 ggtcttccta cttctgggga gagtggtacc caggttgtca accaggaggc ctgggatgaa
     1801 atggcaggtg aagatgccat cagatctcca accccaggtc ctaaaacccc agacactggt
     1861 tttgagatga ggcatgagga tgaagaccag atttcagagc aagacatttt tgaaggtttg
     1921 cctggagcct tatcaaagtg tactgcagag gattgctacc ctcatgattg gggggaagac
     1981 agtgaaaatg aaaacgaagg taaagggcgg tggggaaatc catcccagga tcagtgggaa
     2041 gaatgttctt ctgaagagga cttagaaaaa ctcatcgatc atcaaggcct gtaccttgca
     2101 gagaaaccct tcaagtgtga cacgtgcatg aaaaggttca gccggaattc gcagttaatc
     2161 gcccaccagc ggatacacac aggtgagagg ccctacaaat gccttgaatg tgggaaaagc
     2221 tttagtgacc gctccaactt caatacccat cagagaatcc acactggaga gaagccctac
     2281 aaatgccttg aatgtgggaa aagctttagt gaccactcca atctcatcac ccaccagaga
     2341 acgcacacga gggtgaaacc ctataaatgt ggggaatgtt gggaaggctt cacccagagc
     2401 tcaaaccttc tgaaacatca gagaatccac ttgggaggaa atcctgatca ctgtggtgag
     2461 cctgggaaaa actctggcca gagcccatcc tttagtgctc actggaggaa ctcagcagag
     2521 gagacatctc tggaacaaac tcagagtgcc agtaagaact tgaattctcc tggactgcaa
     2581 agcaccaact caggggataa actttatcag tgttccgaat gtggaagaag cttctccaag
     2641 agttctgccc tcatcagtca ccaaagaatc cacacgggag agaaaccata tggatgtgcc
     2701 gaatgtggga aaagcttcag taagagctcc actctggcca accaccagcg aacccacact
     2761 ggggagaagc cgtatgagtg tgcggactgt gggaaatgct tcggggagcg ttccaagctc
     2821 atcacacacc agagggtgca cacaggagag aagccctaca gatgcctcga gtgtgggaag
     2881 ttcttccgtg accgttccaa cctcattacc caccagagaa tccacacagg agagaaacct
     2941 tataagtgca gagagtgtgg gaaatgcttt aaccagagct ccagtcttat tattcaccag
     3001 agaatccaca ccggggagaa accctacaag tgtatggagt gtggcaaaga tttcaacaac
     3061 agctcccact tcagtgccca caggagaacc catgcaggag ggaaggcgtc ataggagaca
     3121 aaagagaaaa acgtatattt aaatctccca agatcctaag acatatgcta gaaagaaact
     3181 gtcccaattt ttaagattag cgtgtacctg gggaacttac cttggtacag tccaggtaat
     3241 tcggaagtga attacaaatg ctaacgatcc agatttgaag gcacttttct taagtgtaat
     3301 gtgttttttc tcctgcaaaa aaacccacac agtcctcagg ctgcccttat atttgctgtt
     3361 gtgtaagagc tttatcagtg tttgagccag actggtaact gaggggatta gaggtaaatc
     3421 agtgatcctg agcagtgatt ctagaccttt ctgtgccttc acaccatcca catgtacaca
     3481 cgccccatca gtgtatgttg gcaaattctc atatgtggcc attttccgtt ggggcataac
     3541 ctcctgggag aactttgaga ctctccagtg atgggggcat aattgagaat cagtggccta
     3601 gagcagccac catgagctta tcaaagggta gaaacaacag tgacatcatt actagatcat
     3661 tattaataat agcaaaagta gccagcatct atcgagctct tcagcaggct ttgtgctaag
     3721 cactttgtat acatcatctc atttactcct cacagcagcc ccaggaggta ctaatatttt
     3781 ccccatttcc cagaagagag aagtgacttg cttgggtcac acatctgaaa atggcagagg
     3841 caggattcaa ccagctctgt ctctagggcc tgaggtgctt tcactgcttc actgaatccc
     3901 ctttcacatt ggggcaggta actcaggtgc caaagcactt tgtagaccac attttctgtt
     3961 aaaattccct atgagttctg tctttaacaa atatggacat tgagaatccc agaagattga
     4021 aggactgggg atgttcagag ttggcaatgt gctttgagca aggctgaact catcaaagca
     4081 cttgatgtga atttccatct tcacaataat atgggggaga gacagaggtg agttgagatt
     4141 gggaacaaga atgtagccaa agtgatgttt cttccaatga gatacagttt tggctaagga
     4201 aatgggattt ttaagaattt cccttattct caggggggtc agccctgctt cctgttagac
     4261 ttggctggat cgtaggttga accttaagaa acctgggctt gctggccagt gctcacttac
     4321 cctggtgtgt tggccccctg gccctttccc tccaggcaca gcagaagctt tgcgccaagg
     4381 ctgaggcaga agtggggtgg aaggagtggt gtgtgtgggg tgccgcggag ggggctttga
     4441 aggctattgc ttaatccagg ttcatggtgc acttttactc tgagccatct tgaaccagac
     4501 ctacccagcg ctgtctaaat gttggccgta aagacctgcc tccagctcca acaggctcaa
     4561 tcagaaaggt tcacacagga tggtttccta gttcgcagcg ctttggcctc caggatttct
     4621 cctcaggagg gttaaacaat gttggccaag gactatggtt tccaaaggat tttaaaggag
     4681 catccctctc ctgacatccg cctatgatac cgggaatgcc gttcataccc tggctcgttc
     4741 atcaacttgg gaagtactat tagatagtag atgtgaggga accttgaaga gtggaactct
     4801 gcatgtgaag cagtcagtgg ggagactggc gctcccaccg acgcttatca caccttagtc
     4861 ccttcctcgg cttcccaaga acctgcttac ctcggatcac tgcctatcac ccccttcccg
     4921 gtttacctct tctggctcac cttacctctg aggagcaggg cctgtgagtg agccctggct
     4981 ttgaaccacc aggtgtcagt aactgcaaca gtaggatggt gggtagggaa gcacctgagc
     5041 caagaggaag gatcctgcag gaagggaagg gaggtccagg gaaagaccaa gtggtgtgaa
     5101 atagcatggc ttcagggtgg ggctgggacc ataacttctt agctctattg gggtttgtaa
     5161 atgggagatg aggagtgtta gctcagatta gaagggtgtg ggggggcggt catggaggac
     5221 ccgtggctgc tgagggggac atggtcagat gcgcggtgtt gaaacctaat agctgaacag
     5281 aacctgcagt taggacagcc tgttgggaca ctgttgcaat attccaggta aacgtgaggg
     5341 tccgaactag agcaggggta acgttgaaga ggaggggatg attcgagagg ttgcacaggt
     5401 agaattgagg acagcagagg agagccaggc tgcctgggtg gctggtggag cctgctgtca
     5461 ttcagaactg ggatcacagg aggaggtgga ggtagggcag gagggcagaa gatcagaagt
     5521 ttaatttggg ccattttggt tagggacatc caagaggtga tacactacga agcaggcatt
     5581 tggatatctg ggcctgaagc tggggggagg ttaggactag acagttatct gtatgcttgg
     5641 gagttacctt catgttcaag tcacagaaag gctgggcccg ggacagaact ggagaagcac
     5701 cacgtgtaga ggaagatgcc cctcagagga gatctagact accccccagt cccaccacct
     5761 cctgagcact ccagccaact ttcggacact gcctcaatcg ctgctgacac cggaattgtc
     5821 aatgtagttc tgaatttcct ggaaccttcc ctgtagaagc caagctgagc tctgtgtaga
     5881 agtgagataa tggccctctc ccctcccaag catcagccgt tcccctgctc ttggaagtgt
     5941 gctggtgtct catgttctca agtgaacagt tttgatgttt attacctatt ggtcctttct
     6001 cgtaactcag gttcagccat gaaatcgagg gcattgtggg ccaggagaga aagtggccca
     6061 ggaggacctt ctctccttgt gtacctgact cttcctttgg aagaagttcc ctttcaggtg
     6121 gcttccatgt ttggggcccg acccatcact ctgccagggt acccagacat ccttcaacag
     6181 gtctttgctg ctcaaataaa ccgacat
//
LOCUS       XM_032611705             563 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 183
            member A (FAM183A), mRNA.
ACCESSION   XM_032611705
VERSION     XM_032611705.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..563
                     /gene="FAM183A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins"
                     /db_xref="GeneID:116743320"
     CDS             75..482
                     /gene="FAM183A"
                     /codon_start=1
                     /product="protein FAM183A"
                     /protein_id="XP_032467596.1"
                     /db_xref="GeneID:116743320"
                     /translation="MAGHQKEKAIADEVHQNQILRELYLKELRTQKLHTQYHVNPLRK
                     VHTIARKPMSWHDNLEEPADARFLSLIHHAAQGPRRKYPETQTESQEIGWDSEPLVNP
                     QRDDHRLNHFRVYSDITLYKAKMWSLGEDGHHK"
     misc_feature    126..437
                     /gene="FAM183A"
                     /note="FAM183A and FAM183B related; Region: FAM183;
                     pfam14886"
                     /db_xref="CDD:434286"
ORIGIN      
        1 cctggcagcc ggtgagagtc caaagggcgg tgagaggggg ttaggtactg accagacaca
       61 gcagagccaa ggccatggct ggacaccaga aggagaaggc gatcgcagat gaggtccacc
      121 agaaccagat cctgcgggaa ttgtacctca aagagttacg aacccagaaa ctccacacgc
      181 agtatcatgt gaatccactc cgcaaggttc acacaatcgc cagaaagccc atgtcttggc
      241 atgataacct ggaggaacct gcagatgcca ggttcctaag tcttatccac catgccgccc
      301 agggaccaag gaggaaatac cccgagacac agactgaaag tcaagagatt ggatgggact
      361 cagagccatt ggtcaaccca caacgcgatg accacaggct gaaccacttc agggtctaca
      421 gtgacatcac tctatacaag gctaaaatgt ggagcttggg agaagatggt caccacaagt
      481 agtattcccg cagtgctgtc aatcgctgtc gttaatgccc agagtgtgtg cttcccaggt
      541 taaaaaaaga cactttaaag cct
//
LOCUS       XM_032611718            4005 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743328
            (LOC116743328), mRNA.
ACCESSION   XM_032611718
VERSION     XM_032611718.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4005
                     /gene="LOC116743328"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743328"
     CDS             2269..3069
                     /gene="LOC116743328"
                     /codon_start=1
                     /product="uncharacterized protein LOC116743328"
                     /protein_id="XP_032467609.1"
                     /db_xref="GeneID:116743328"
                     /translation="MNSSAGDLGVGAGGRSPWGDPAGFIVVPTAYALVPGLGLPANVA
                     ALAVFVRRGRRLGQALRLHLLNLAMADVLVMLTLTLWLTYYLGLTHWPFPEAACRVAG
                     TTYCVSTYAALAFAVLTSVCRCGSVCPPSPAPLGPRPRHVCCCPAGWPGLCRTLAGHP
                     ACAAPQAGQRQRGPGLRHRGLLPRRLPAGACGLCELGAGARGALGPGPGPRPSRYKPA
                     RGQDHGARAPVGLCPVPGALPPAAGALGGRAGGHRGPRRQRVPGHLHT"
     misc_feature    2341..>2715
                     /gene="LOC116743328"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    2347..2421
                     /gene="LOC116743328"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    2449..2514
                     /gene="LOC116743328"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    2563..2631
                     /gene="LOC116743328"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    <2641..3042
                     /gene="LOC116743328"
                     /note="EBNA-3B; Provisional; Region: PHA03378"
                     /db_xref="CDD:223065"
ORIGIN      
        1 tatcgtggtg gcttctcgtt gtggagcacg ggctctgggc gcctgggctt cagtagttgt
       61 ggctcacagg ctccgtagtt gtggctcgtg ggatctagag cgcaggctca gtagttgtgc
      121 tgctttcaat ttattgactt ctgccctcag ggttacaaaa tagctgaagc agctccagac
      181 aacacatttg cacataatat ccaaaggtga aaagaaagag gaaagctctc ttagaagacc
      241 ctaggtttcc ccttgcatcc cactgtacag aattatgtca catttccatt cttagaccaa
      301 tcactggcaa ggagaatgga atttccaagt tggacttaga caagttaaga tttacccaca
      361 ctggtcaagt ggtcagcaaa gaagaaggga gagagtagat agtgccactt attagcttat
      421 ttgcaaatat ggataacaat ggcaaatatt ttcatagagt tgctgtgaag atttagtgag
      481 ttagtgttta caatagtgcc tggtacataa taagtgctca gtaaatgcta ttattaaata
      541 gcgtttgtta ttaaatagca gttctacaga tgagaaaatg gattcagaaa gcttaagtgc
      601 ctatgtgtca gacctgagac tagaattaag acctggttga ctccagaacc cacactttac
      661 actgcaccag ttgccaaagt tggaagtggg caggtgtggc acccctgctc ttcaacttga
      721 aggtagatgg gatgatcggt tcaatgtaat taaatctcct ttgcttccca gaattgccct
      781 tctgcatgaa aattttgaag cccttgaaag tagagcctgg aaaccctggg atcttggcct
      841 cttaccatcc ccaccccttc caggattcca tagccagctt gtctccaacc aggactttga
      901 gtaaaacctc acacagctgg tattagattg aaggctccta tttaccgagg cttggcctgt
      961 aagctgattt agcagccaca gggcccttca agcttggctg tagggcccac ccagcagctt
     1021 caggaaaggc agggtgctgg aagagtaggc tggccagctg gtatggagga gcagttggga
     1081 ttgacagcag caggagtatc ttcagcttta gctgtgctgc ctcaccccaa ggagaagcca
     1141 ggccttagga aatgggcccc ccaaaccaca gcctaaggct tggtcaggtc ggcacaatga
     1201 cattcagctg cgaggccttc cttatacttt gctatctccc tccctgtgcc cccttgcctt
     1261 gcaatgacat tcccttccct tggggccctg gctgcacccc ataaaccctg ctcacagctg
     1321 ccacaggtgg actccagccc ttccagctgt tgagcccatt cttcatgtcg tgtctgggga
     1381 ttagtcagtt gatgggaggg cctaggatac gtgggtggca gtggattctg atctgtctca
     1441 gctccttaaa cccaggcccc caggaaccca aagagatctg cagcagccag agcagcaaga
     1501 ggtaagagag gagtgatctg gtgggaaggc ggggagaggt tcagggtggg atggttaggg
     1561 ccagagccat ggtgggccga gctgagcgcg aggggcagaa gggaatacac tcactcaggg
     1621 tcccagaaag gactggagcc tgagagattc aaaggtagga gtacaaattt tggtattgga
     1681 ggaaccatgt tttgaaacac cctaggagtg tgactatgtg ccacaaatag gaacaggaca
     1741 ttggcttgtg cacttatccc ccttggggag agggggaata tgcccagatg tgtttgtgct
     1801 gttgtgtttg actggggtgt ccgtgtctct aacgctgtgt gtgtgcctgt gtgagtgtac
     1861 acatttatct ctgtgctgcc tagaggggaa gggagcgtat ctccccagtg tcagccagtg
     1921 ctcagagttt tacttatgtt ttctcataat ccccccaaca acactgtgag gtaggtgttt
     1981 taatctccat tttacagcag agaagacagg ctcagtgaag ctgagtaatc tgcctgaggt
     2041 catatggcag ataaatgtgt gtatctagga tctgcctgat tcccgggtct gtgctctttg
     2101 atttgctgtc caaagtttta aatcagaccc aggacttctt tgtggtcaaa aggcaagggg
     2161 gaaggaaata agactggaag gcctgtgaga tgtgaaacct tttcagctct gcccagggtg
     2221 ctccaggcaa gctccaggag aggaccttca ccaagcccaa ggtccgagat gaacagcagc
     2281 gctggggacc tgggtgttgg tgctggcggc cgcagcccct ggggcgaccc tgctggcttc
     2341 attgtggtgc ccacagccta cgccttggtg ccgggcctgg ggctgccggc caacgtggcg
     2401 gccctggcag tgttcgtccg ccgcggcagg cgcctgggcc aggccctgcg tctccacctg
     2461 ctcaacctgg ccatggccga cgtgctcgtc atgctcacac tgacgctgtg gctcacctac
     2521 tacctgggcc tgacccactg gcccttcccg gaggctgcct gccgcgtggc cgggaccacc
     2581 tactgcgtgt ccacctacgc agccttggcc ttcgcagtgc tcaccagcgt gtgccgctgc
     2641 ggctcggtgt gcccacccag ccctgcgccg ctagggcccc gcccgcgcca cgtgtgctgc
     2701 tgcccagctg gctggccagg cctgtgccgc accctcgctg gccaccccgc atgcgctgcg
     2761 ccccaggccg ggcagcgcca gcgcgggcct ggcctacgcc accgtggcct tcttccccgc
     2821 cgccttcctg ctggtgcttg cggcctatgt gagcttggcg cgggtgctcg cggcgccctc
     2881 gggcccgggc ccggccctcg ccccagccgg tacaaaccgg cgcgcggcca ggaccatggt
     2941 gctcgggcac ctgttggtct ttgccctgtg cctggcgccc taccacctgc tgctggcgcc
     3001 ctgggtggcc gggcaggagg gcaccgtggg ccgcgacgac agagggtgcc aggccacctc
     3061 cacacttgac gtcctgcaca ccctcagcct ggcgctgctg agtctcaaca actgcttgga
     3121 cccgctcatc tactgcttct ctgtgcacag cttctgccag gactgctggg cgctgagctg
     3181 cctcccgggg gtagggaggt ccggggcaca ctcggtctcc ttggcctcca tggcctcctc
     3241 ctagagagcc ccctggcctg ctgcctgctt cacccctgcc accctcccag tggcgtcctg
     3301 ggtggtgaaa gctctttgca aggacctaga ctccagtcct gacgcagcca catactagcc
     3361 gcctgtagtt gtagacctcc gggctctgtc aaaaggggaa agaacattct ttgttgaccc
     3421 gaatgtttcc tagactttgc cagtgtttgg atacagataa tatgccattg ctttcaaaat
     3481 ctctggggat aaaccccaaa gtcctaaaca gggcctacaa gggctaactg cctcctgctt
     3541 ctctctcagc atcctctcat cctcattttc cctcttctcc tctaccacat ctgcccgtct
     3601 ccgtgggttg agtcacctta tcagtccctg gaacagacca gtttcctcct cttcaaagcc
     3661 tttgcaactg actgccagga atgatgtccc tctgtctcct ttgctaagtt aattcctttc
     3721 cattctcact tcttcaaacg tagctgtagg gaagcctttc ttgaccagca ccacatacac
     3781 cattccctag actgggttag atctggttgt tcctttatag ctctttccac aattgcaatc
     3841 aagcaattaa ctggttagtt cttttttttt ttttctgttg ttctttttct ctgtatttat
     3901 gtcgatccat aagagagtgc catttttgta gacccaaaag ggttgaatag tggcagtttt
     3961 tactttcatc caattcaact taataaattc catgtttgtc ttatt
//
LOCUS       XM_032611734            3978 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SRY-box transcription factor 13 (SOX13),
            transcript variant X1, mRNA.
ACCESSION   XM_032611734
VERSION     XM_032611734.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3978
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3978
                     /gene="SOX13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743331"
     CDS             455..2302
                     /gene="SOX13"
                     /codon_start=1
                     /product="transcription factor SOX-13 isoform X1"
                     /protein_id="XP_032467625.1"
                     /db_xref="GeneID:116743331"
                     /translation="MSMRSPGSAQLALDDVGTMVDCTVKSEGKKEPCHEAPQGLATAA
                     EPQPGDPARAPQDGADPPAPAQDSSSLESNGSPEPKRPGGSEAASGSQEKLDFNRNLK
                     EVVPAIEKLLSSDWKERFLGRSCVETKDVKGTQESLAEKELQLLVMIHQLSTLRDQLL
                     TAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQINMP
                     YVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPAAPVVKRPGALSAH
                     HALQEPSQPLNLTAKPKAPELPNASSSPSLKMSNCGPRPPSHGAPTRDLQASPPSLPL
                     GFLGEGDAVTKAIQDARQLLHGHSGALESPPNTSFRKDLISLDTSPAKERLEESCVHP
                     LEEAMLGCDVDGSRHFPESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKI
                     LGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKA
                     LMRTRRQDARQSYTTPPQASQVQMSPSDVLYPRVAGVPLAQPLVEHYVPRSLDPNMPV
                     IVNTCSLREEGEGTEDRHSVADGEMYRYSEDEDSEAEEKSDGELVVLTD"
     misc_feature    <1106..>1447
                     /gene="SOX13"
                     /note="DNA translocase FtsK; Provisional; Region:
                     PRK10263"
                     /db_xref="CDD:236669"
     misc_feature    1700..1930
                     /gene="SOX13"
                     /note="high mobility group (HMG)-box found in group D
                     SRY-related high-mobility group (HMG) box (Sox)
                     transcription factors; Region: HMG-box_SoxD; cd22030"
                     /db_xref="CDD:438839"
     misc_feature    order(1700..1702,1706..1711,1715..1720,1724..1729,
                     1739..1741,1748..1750,1760..1762,1781..1789,1796..1801,
                     1808..1810,1817..1822,1874..1876,1904..1906,1910..1921)
                     /gene="SOX13"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438839"
ORIGIN      
        1 cgcagcggtc agcctccgag gccctgattt gggaccgagc cgaggctctg agcgcggagc
       61 gggagagccg ggcgggccgg cgcagcaacc ggcgagtcag ggagcagtac cgcggaaggc
      121 agggagacgg ccgcgagctg agggcagagg gcaaagtgca gagagcgacc tggctcggcg
      181 gagggcgccg cccggccgga accgagctct ccgccccgga cggcggccag tagtggggtg
      241 cggacccggg gtcgccacga gtcccgagcg actccccggc cgacggctgg gggcgtgcct
      301 cctcccagcc cagcggcccc agcccggcgc gcccgttcgt agcgtcgccg gggcatgtga
      361 gcgggaagcc caggctgcca gccgcgagga cccggacgga ggagtagcag gagcgcggag
      421 ccgagagcct cgagcccagc gcccggctga gtagatgtcc atgagaagcc ccggctctgc
      481 ccagctggcc ctggatgacg ttggcaccat ggtggactgt actgtcaagt cagaggggaa
      541 gaaggaaccc tgccacgagg ccccccaggg cttggccacc gcagctgaac cccagcctgg
      601 agatccagcc cgggcccccc aggatggtgc tgaccctcca gctccagccc aggacagcag
      661 ctccctggaa agcaacgggt ccccagaacc caagagacca ggaggctctg aggctgcttc
      721 tggaagccag gagaagctgg acttcaaccg aaatttaaaa gaagtcgtgc cggccatcga
      781 gaagctgctg tccagtgact ggaaggagag gtttctggga aggagctgtg tggaaaccaa
      841 agatgtcaaa gggacccagg agagcctggc agagaaggag ctccagctgc tggtcatgat
      901 ccatcagctg tccaccctgc gggaccagct gctgacggcc cactccgagc agaagaacat
      961 ggccgctatg ctctttgaga agcagcagca gcagatggag ctggcccggc agcagcagga
     1021 gcagatcgcc aagcagcagc aacagctgat tcagcagcag cataagatca acctccttca
     1081 gcagcagatc cagcagatca acatgcctta cgtcatgatt ccagccttcc ccccaagcca
     1141 ccagcctctg cctgtcaccc ccgactccca gctggctttg cccattcagc ccattccctg
     1201 caagccagtg gagtacccgc tgcagctgct gcacagcccc gccgccccag tggtgaagag
     1261 gcctggggcc ttgtctgccc accacgccct acaggagccc tcccaacccc taaacctcac
     1321 ggccaagccc aaggcccccg agctgcctaa tgcctccagc tccccgagcc tgaagatgag
     1381 caactgtgga ccccgtcctc ccagccacgg ggcccccaca cgggacctgc aggccagccc
     1441 ccccagcctg cctttgggct tccttggtga aggggatgct gtcaccaaag ccatccagga
     1501 tgccagacag ctgctgcacg gtcacagtgg agccttagaa agtcccccca acacctcctt
     1561 ccgtaaggac ctcattagcc tggacacatc cccagccaag gagcggctgg aggagagctg
     1621 tgtgcaccca ctggaagaag ccatgctggg ctgtgacgtg gacggctccc gccacttccc
     1681 tgagtcccgg aacagcagcc acatcaagag gcccatgaat gccttcatgg tgtgggccaa
     1741 ggatgagagg aggaagatcc tccaggcctt cccagacatg cacaattcca gcatcagcaa
     1801 gatccttggc tcccgctgga agtccatgac caaccaggag aagcagcctt actacgagga
     1861 gcaggcaagg ctgagccggc agcacctgga gaagtaccct gactacaagt acaagccacg
     1921 gcccaagcgc acctgcatcg tggagggcaa gcggctgcgg gtgggcgagt ataaggccct
     1981 gatgaggacc cggcgccagg atgcccgcca gagctacacg acccccccgc aggccagcca
     2041 ggtgcagatg agcccctcag atgtcctgta ccctcgggtg gcaggcgtgc ccctggcaca
     2101 gcccctggtg gagcactacg tgccccgcag cctggaccca aacatgcctg tcatcgtcaa
     2161 cacctgcagc ctcagggagg agggtgaggg cacagaggac aggcactcgg tggctgatgg
     2221 cgagatgtac cggtacagcg aggatgagga ctcagaggcc gaggagaaga gcgacgggga
     2281 gctggtggta ctcacagact gatcccggct acgtgggcct ggccctcctc catggggaag
     2341 accgggcccc acgccagcag gcacagcaac cccacgcgga ctgcgttggt acttggactt
     2401 gcgcatgcct gggagatggg cacagctgtg catttgtaga tacattcatg atgggagatg
     2461 ccccctcccc accacacctg tgggcacacc tgaggatctg atggcccgag tgggtcctgc
     2521 atggcggtga tgggctgggc tggctgagct ccgtggtggc ccttggggct cgtggccagg
     2581 ggacactgta tgaccctccc ctcctgcagg tctgcccatc ccaggggtat ggcagctaca
     2641 gacctgttcc cctggggcca catgctttgt ttccattctt gtcctggctg gaccagccac
     2701 catgggacca acacgcaccg ccccaccaca gtaccccaga tcgctcctct accacgagga
     2761 tcgctttgta ctttgtgcaa agaggtctgg ctctcctcca tgtctcttat cttctgccaa
     2821 gcctttcgtg cctctggctg gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtatgtgtac
     2881 ccatgtgcgc aagtgcacgt tttcatctgt tctttcattg cacaaggtat ttattgagtg
     2941 ccaggcactg tcgctgagtt cctgtgggtg tgtctcttga tgccattctt gcttctccgg
     3001 ggggctcttt ctgtgcttct ctttgtcccc aaattgctac ctctttgtca gtctgggtgt
     3061 ctcaggttct gtgtgtcctt ggtgcatttc tctgtccttg tttctctgca gggccttttt
     3121 ttgtgtctct cccttcctcc gtgtctgccc ttgccccttt aacgcctgct gggtgtctgt
     3181 aagcccctgg tctgccctgg gctccccagc catcctgacc tcccctgcct gccccttcac
     3241 tccctccctg actctgcatg tcagttccca tggagccatt tttagctccg agcagcatgg
     3301 gagtgtgctc agcttccaag gggctctgtc atggtgcccc agcccctggt cccaacctga
     3361 gtgccaggag tgggggcagg aggactgatg gtgccccctt ctgtaagtga cagaagccct
     3421 ggagaggggg ctcttgtgca gctggtctcc actcctctgt cctgagcagg ggatgggagc
     3481 tccccacccc caccctgtcc ttggaatgct tcatcctctc ccacccagct ctgcccctac
     3541 acctgcccgc tcctctcccc tcccccactc tacacccccc cccccccccg ccgccctccc
     3601 ctctcccact ctacacccga aacttgcctc tcagctcctg atccctttcc ctaggtcttt
     3661 ccctaggaaa atcaaaccct gttggcacct gactccaaag acccagaaca gccctggggc
     3721 aaggtgggaa gggaacccca aatcctacag ggacagatgt ggagtctgtg tccgttcccc
     3781 catcttctcc ccttctactt ccctgaacca acttctctcc aggctgtttc ttttttttat
     3841 gactgtaaac atagatagtg ctttattttg ttaataataa gataatgatt agtaacttaa
     3901 ccagcacatt tctcctattt acacttgggg gaattttttt gttttctgtt gacataataa
     3961 agacagacca tttcagaa
//
LOCUS       XM_032611742            3975 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SRY-box transcription factor 13 (SOX13),
            transcript variant X2, mRNA.
ACCESSION   XM_032611742
VERSION     XM_032611742.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3975
                     /gene="SOX13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743331"
     CDS             455..2299
                     /gene="SOX13"
                     /codon_start=1
                     /product="transcription factor SOX-13 isoform X2"
                     /protein_id="XP_032467633.1"
                     /db_xref="GeneID:116743331"
                     /translation="MSMRSPGSAQLALDDVGTMVDCTVKSEGKKEPCHEAPQGLATAA
                     EPQPGDPARAPQDGADPPAPAQDSSSLESNGSPEPKRPGGSEAASGSQEKLDFNRNLK
                     EVVPAIEKLLSSDWKERFLGRSCVETKDVKGTQESLAEKELQLLVMIHQLSTLRDQLL
                     TAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQINMPY
                     VMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPAAPVVKRPGALSAHH
                     ALQEPSQPLNLTAKPKAPELPNASSSPSLKMSNCGPRPPSHGAPTRDLQASPPSLPLG
                     FLGEGDAVTKAIQDARQLLHGHSGALESPPNTSFRKDLISLDTSPAKERLEESCVHPL
                     EEAMLGCDVDGSRHFPESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKIL
                     GSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKAL
                     MRTRRQDARQSYTTPPQASQVQMSPSDVLYPRVAGVPLAQPLVEHYVPRSLDPNMPVI
                     VNTCSLREEGEGTEDRHSVADGEMYRYSEDEDSEAEEKSDGELVVLTD"
     misc_feature    <1103..>1444
                     /gene="SOX13"
                     /note="DNA translocase FtsK; Provisional; Region:
                     PRK10263"
                     /db_xref="CDD:236669"
     misc_feature    1697..1927
                     /gene="SOX13"
                     /note="high mobility group (HMG)-box found in group D
                     SRY-related high-mobility group (HMG) box (Sox)
                     transcription factors; Region: HMG-box_SoxD; cd22030"
                     /db_xref="CDD:438839"
     misc_feature    order(1697..1699,1703..1708,1712..1717,1721..1726,
                     1736..1738,1745..1747,1757..1759,1778..1786,1793..1798,
                     1805..1807,1814..1819,1871..1873,1901..1903,1907..1918)
                     /gene="SOX13"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438839"
ORIGIN      
        1 cgcagcggtc agcctccgag gccctgattt gggaccgagc cgaggctctg agcgcggagc
       61 gggagagccg ggcgggccgg cgcagcaacc ggcgagtcag ggagcagtac cgcggaaggc
      121 agggagacgg ccgcgagctg agggcagagg gcaaagtgca gagagcgacc tggctcggcg
      181 gagggcgccg cccggccgga accgagctct ccgccccgga cggcggccag tagtggggtg
      241 cggacccggg gtcgccacga gtcccgagcg actccccggc cgacggctgg gggcgtgcct
      301 cctcccagcc cagcggcccc agcccggcgc gcccgttcgt agcgtcgccg gggcatgtga
      361 gcgggaagcc caggctgcca gccgcgagga cccggacgga ggagtagcag gagcgcggag
      421 ccgagagcct cgagcccagc gcccggctga gtagatgtcc atgagaagcc ccggctctgc
      481 ccagctggcc ctggatgacg ttggcaccat ggtggactgt actgtcaagt cagaggggaa
      541 gaaggaaccc tgccacgagg ccccccaggg cttggccacc gcagctgaac cccagcctgg
      601 agatccagcc cgggcccccc aggatggtgc tgaccctcca gctccagccc aggacagcag
      661 ctccctggaa agcaacgggt ccccagaacc caagagacca ggaggctctg aggctgcttc
      721 tggaagccag gagaagctgg acttcaaccg aaatttaaaa gaagtcgtgc cggccatcga
      781 gaagctgctg tccagtgact ggaaggagag gtttctggga aggagctgtg tggaaaccaa
      841 agatgtcaaa gggacccagg agagcctggc agagaaggag ctccagctgc tggtcatgat
      901 ccatcagctg tccaccctgc gggaccagct gctgacggcc cactccgagc agaagaacat
      961 ggccgctatg ctctttgaga agcagcagca gcagatggag ctggcccggc agcagcagga
     1021 gcagatcgcc aagcagcagc aacagctgat tcagcagcag cataagatca acctccttca
     1081 gcagcagatc cagatcaaca tgccttacgt catgattcca gccttccccc caagccacca
     1141 gcctctgcct gtcacccccg actcccagct ggctttgccc attcagccca ttccctgcaa
     1201 gccagtggag tacccgctgc agctgctgca cagccccgcc gccccagtgg tgaagaggcc
     1261 tggggccttg tctgcccacc acgccctaca ggagccctcc caacccctaa acctcacggc
     1321 caagcccaag gcccccgagc tgcctaatgc ctccagctcc ccgagcctga agatgagcaa
     1381 ctgtggaccc cgtcctccca gccacggggc ccccacacgg gacctgcagg ccagcccccc
     1441 cagcctgcct ttgggcttcc ttggtgaagg ggatgctgtc accaaagcca tccaggatgc
     1501 cagacagctg ctgcacggtc acagtggagc cttagaaagt ccccccaaca cctccttccg
     1561 taaggacctc attagcctgg acacatcccc agccaaggag cggctggagg agagctgtgt
     1621 gcacccactg gaagaagcca tgctgggctg tgacgtggac ggctcccgcc acttccctga
     1681 gtcccggaac agcagccaca tcaagaggcc catgaatgcc ttcatggtgt gggccaagga
     1741 tgagaggagg aagatcctcc aggccttccc agacatgcac aattccagca tcagcaagat
     1801 ccttggctcc cgctggaagt ccatgaccaa ccaggagaag cagccttact acgaggagca
     1861 ggcaaggctg agccggcagc acctggagaa gtaccctgac tacaagtaca agccacggcc
     1921 caagcgcacc tgcatcgtgg agggcaagcg gctgcgggtg ggcgagtata aggccctgat
     1981 gaggacccgg cgccaggatg cccgccagag ctacacgacc cccccgcagg ccagccaggt
     2041 gcagatgagc ccctcagatg tcctgtaccc tcgggtggca ggcgtgcccc tggcacagcc
     2101 cctggtggag cactacgtgc cccgcagcct ggacccaaac atgcctgtca tcgtcaacac
     2161 ctgcagcctc agggaggagg gtgagggcac agaggacagg cactcggtgg ctgatggcga
     2221 gatgtaccgg tacagcgagg atgaggactc agaggccgag gagaagagcg acggggagct
     2281 ggtggtactc acagactgat cccggctacg tgggcctggc cctcctccat ggggaagacc
     2341 gggccccacg ccagcaggca cagcaacccc acgcggactg cgttggtact tggacttgcg
     2401 catgcctggg agatgggcac agctgtgcat ttgtagatac attcatgatg ggagatgccc
     2461 cctccccacc acacctgtgg gcacacctga ggatctgatg gcccgagtgg gtcctgcatg
     2521 gcggtgatgg gctgggctgg ctgagctccg tggtggccct tggggctcgt ggccagggga
     2581 cactgtatga ccctcccctc ctgcaggtct gcccatccca ggggtatggc agctacagac
     2641 ctgttcccct ggggccacat gctttgtttc cattcttgtc ctggctggac cagccaccat
     2701 gggaccaaca cgcaccgccc caccacagta ccccagatcg ctcctctacc acgaggatcg
     2761 ctttgtactt tgtgcaaaga ggtctggctc tcctccatgt ctcttatctt ctgccaagcc
     2821 tttcgtgcct ctggctggtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgta tgtgtaccca
     2881 tgtgcgcaag tgcacgtttt catctgttct ttcattgcac aaggtattta ttgagtgcca
     2941 ggcactgtcg ctgagttcct gtgggtgtgt ctcttgatgc cattcttgct tctccggggg
     3001 gctctttctg tgcttctctt tgtccccaaa ttgctacctc tttgtcagtc tgggtgtctc
     3061 aggttctgtg tgtccttggt gcatttctct gtccttgttt ctctgcaggg cctttttttg
     3121 tgtctctccc ttcctccgtg tctgcccttg cccctttaac gcctgctggg tgtctgtaag
     3181 cccctggtct gccctgggct ccccagccat cctgacctcc cctgcctgcc ccttcactcc
     3241 ctccctgact ctgcatgtca gttcccatgg agccattttt agctccgagc agcatgggag
     3301 tgtgctcagc ttccaagggg ctctgtcatg gtgccccagc ccctggtccc aacctgagtg
     3361 ccaggagtgg gggcaggagg actgatggtg cccccttctg taagtgacag aagccctgga
     3421 gagggggctc ttgtgcagct ggtctccact cctctgtcct gagcagggga tgggagctcc
     3481 ccacccccac cctgtccttg gaatgcttca tcctctccca cccagctctg cccctacacc
     3541 tgcccgctcc tctcccctcc cccactctac accccccccc ccccccgccg ccctcccctc
     3601 tcccactcta cacccgaaac ttgcctctca gctcctgatc cctttcccta ggtctttccc
     3661 taggaaaatc aaaccctgtt ggcacctgac tccaaagacc cagaacagcc ctggggcaag
     3721 gtgggaaggg aaccccaaat cctacaggga cagatgtgga gtctgtgtcc gttcccccat
     3781 cttctcccct tctacttccc tgaaccaact tctctccagg ctgtttcttt tttttatgac
     3841 tgtaaacata gatagtgctt tattttgtta ataataagat aatgattagt aacttaacca
     3901 gcacatttct cctatttaca cttgggggaa tttttttgtt ttctgttgac ataataaaga
     3961 cagaccattt cagaa
//
LOCUS       XM_032611750             988 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 177
            member B (FAM177B), mRNA.
ACCESSION   XM_032611750
VERSION     XM_032611750.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..988
                     /gene="FAM177B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 74% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743341"
     CDS             1..516
                     /gene="FAM177B"
                     /codon_start=1
                     /product="protein FAM177B"
                     /protein_id="XP_032467641.1"
                     /db_xref="GeneID:116743341"
                     /translation="MEKDSFQQLELEKGRPSQRRTPSRVIHFVDGDIMEEYSTEEEEE
                     KEEQRTNSTLDPSKPSWGSYLWFWAGRIARTSFSTCEFLGGRFALFFGLNQPKYQYVL
                     NEYYRTQNKESDKESEGNGSKAQPANVPNEKCHLEAGAREYGTRQQDIAEGIPQWSIS
                     SSEGLMADSSS"
     misc_feature    16..360
                     /gene="FAM177B"
                     /note="FAM177 family; Region: FAM177; pfam14774"
                     /db_xref="CDD:434199"
ORIGIN      
        1 atggaaaaag acagtttcca gcagttagaa ctagaaaagg gtagaccttc ccaaaggagg
       61 actcccagca gagttatcca ttttgttgat ggtgacatca tggaagaata tagcacagag
      121 gaagaggaag aaaaagagga acagagaaca aattcaacac ttgatccttc taaaccttca
      181 tgggggtcct acctatggtt ttgggcaggg cgaatagcaa ggacctcatt ttctacatgt
      241 gaattccttg gtggaagatt tgctctcttc tttggtctta atcaacccaa ataccagtat
      301 gtgttaaatg agtactacag aacacaaaat aaggaaagtg acaaggaaag tgaagggaac
      361 ggatcaaagg cccaaccagc caatgttccc aatgaaaagt gtcacctgga ggctggggcc
      421 cgagagtatg gaacgagaca acaggacatt gccgagggca ttcctcagtg gagtatctca
      481 tccagcgagg gcctgatggc agattccagc tcctaatggg cagcggggct atagttcccc
      541 tggatctctc atcctcagtc attgattacc acggcagcag caccacaggt agcacttctg
      601 agccagatct gatctcaatc tctttgtgat ttattctcca gcagccagga attgtaaaca
      661 atcataagaa caattgtgga ttctttctca atgtaaattt ttatttataa ggccagcaac
      721 ccaactctac cccagtgata taagtcctgt ccgtcagttg tgggctacta gtattgacat
      781 ttgtacagta gtataaatgc cttaaggaac ttgggcacag gagttttagg ctgaaactct
      841 ttgtcacgtg gcgagggtat agaaaaggac cctctgttcc tcaaaagaaa ctctgggcat
      901 tatgaagtct aaatcctttc agggtttgac ataagccgtg tccttcgcaa tagctatgtt
      961 ggcttactcg gggcttgctt tgcaataa
//
LOCUS       XR_004346743             516 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743349
            (LOC116743349), ncRNA.
ACCESSION   XR_004346743
VERSION     XR_004346743.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..516
                     /gene="LOC116743349"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116743349"
     ncRNA           1..516
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743349"
                     /product="uncharacterized LOC116743349"
                     /db_xref="GeneID:116743349"
ORIGIN      
        1 cttgagcaga ggagaaggga gaaggaaaga gtctggtgca ctgaaacctg ccctgctggc
       61 tcataagagt tgattgtgca tggatcggtc ctaacgctgc gttcagcgac atcaaactgc
      121 ccacttgctg ttgggcggga ccatgtgacc agttctgctg agtgagctgt gagttgaagt
      181 gacacgtagc agaagattta ggagctgatg tgccatcttc caaccttctc ttctacagct
      241 gcaatcatgg aggccatatg ttgagacagc agaaccacag gatgaagtaa ccggattgct
      301 gagtcagcac atggagaaca gctgtcttta gagagctgcc tgattgtctg tggatgtcag
      361 ggaaataaac atttgttctg tttagccact gagattcgag acaattttgt taccacaaaa
      421 taatttagtc tagcagttct caaacatttg agtctcagga cctctttaaa ctcttaaaaa
      481 attactggta atcctaaaga gctttaactt atgtgg
//
LOCUS       XM_032611762            2095 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G-patch domain containing 3 (GPATCH3),
            mRNA.
ACCESSION   XM_032611762
VERSION     XM_032611762.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2095
                     /gene="GPATCH3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 6
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743358"
     CDS             17..1591
                     /gene="GPATCH3"
                     /codon_start=1
                     /product="G patch domain-containing protein 3"
                     /protein_id="XP_032467653.1"
                     /db_xref="GeneID:116743358"
                     /translation="MAASSAAEEAAVYLIVSGIPSELRSAQLRSYFSQFREQCGCGFL
                     CFHYRHRPERAHPQAAPDSTLTPIRQGLAQTSLNDARTVSTQDSAPAQTRTCCCVISV
                     RGPTQAQRFLRMYSGRRWLDSQGTWLPGRCFIRRLRLPTEASGWDSFPFKTRKELQSR
                     KAESEAFTLADLRRLPELNPPVLMPSGNVGTPLRVFLELIRACRLPPRIITQLHLQFP
                     KTGSSRRYGNVPFKYDDSETVEQAELVYTAEGEEIPQGTCLADVPANPCEEPEEEEEE
                     EEESHSDDDDERGEEWERHEALHEDVTGQERTTEQLFEEEIELKWEKGGSGLVFYTDA
                     QFWQEEEGDFDEQTADDWDVDMSVYYDADGGDKDARDSVQIRLEQRLRDGQEAGSVIG
                     HQVGTFERHTKGIGRKVMERQGWAEGQGLGSGCSGVPEALDSDGQHPRCKRGLGYHGE
                     KLQPFVQPKRPRGTGLGLISTIYDEPLPQDQGESLLRRQPPTSMKFRTDMAFVRGSSC
                     ASDSPSEREWQVQGLP"
     misc_feature    1220..1357
                     /gene="GPATCH3"
                     /note="G-patch domain; Region: G-patch; pfam01585"
                     /db_xref="CDD:396249"
ORIGIN      
        1 tcatgtgaca cccaagatgg cggcgtccag tgcggcggag gaggcggcag tttacttaat
       61 agtgagcggt atcccgtcgg agttgcgctc agcccagcta cggagctact ttagccagtt
      121 ccgggaacag tgcggctgtg gcttcctctg tttccactac cggcatcggc ctgagcgggc
      181 ccatccccag gctgctcccg actctaccct aactcctatc cgccagggtc tcgcccagac
      241 ttcactcaac gatgcccgca ctgtctccac tcaggactct gctcccgccc agacccgcac
      301 ctgctgctgc gtcatctcgg tacgggggcc aactcaagcc cagaggtttc tccgtatgta
      361 ctcgggccgc cggtggctgg attctcaggg gacttggtta cctggtcgtt gtttcatccg
      421 cagacttcgg ctacctactg aggcatcagg ttgggactcc tttcccttca agacccggaa
      481 ggaactgcag agtcggaagg ctgagagtga agccttcacg ctggccgacc tgaggcgact
      541 gccagagctg aacccaccgg tgctgatgcc cagcgggaat gtggggactc ccctgcgggt
      601 ctttttggag ttgatccggg cctgccgtct accccctcgg atcatcaccc agctgcatct
      661 ccagttcccc aagacaggtt cctcccggcg ctacggcaat gtgcccttca agtatgacga
      721 ctcggagact gtggagcagg cagagcttgt gtacacagcc gagggtgagg agatacccca
      781 gggaacctgc ttggcagacg taccagccaa cccctgtgaa gagccagagg aagaagagga
      841 agaggaagaa gagtcacact cagatgacga cgacgagcgg ggtgaggagt gggagcggca
      901 cgaagcgctg catgaggacg tgaccgggca ggagcggacc actgagcagc tctttgagga
      961 ggagattgag ctcaagtggg agaagggcgg ctcaggcctg gtgttctaca ctgacgccca
     1021 attctggcag gaagaggaag gagactttga tgaacagaca gccgatgact gggatgtgga
     1081 tatgagtgtg tactacgatg cagatggtgg agacaaggat gcccgagact ctgtccaaat
     1141 tcgtctggaa cagagactcc gtgatggcca ggaggctggc tccgtgattg gacaccaggt
     1201 gggcaccttc gagcgccaca ccaagggcat tgggcggaag gtgatggagc ggcagggctg
     1261 ggccgagggc cagggcctgg gtagcgggtg ctcaggggtg cccgaggccc tggatagtga
     1321 tggccagcac cccagatgca agcgtggatt ggggtaccat ggagagaagc tccagccatt
     1381 tgtgcaacca aagaggcccc gtggaactgg cttagggctc atctccacca tctacgatga
     1441 gcccctaccc caggaccagg gggagtcgct gctccgccgc cagccaccca ccagcatgaa
     1501 gtttcgcaca gatatggctt ttgtgagggg ttccagctgt gcctcggaca gcccctcaga
     1561 gcgtgagtgg caagttcaag ggcttcctta atcaggatca ctcataattg cacagcggca
     1621 gccctctgcc tggccctatc tcccacggaa gaagaactct gggagcagca gtctgcgcgg
     1681 cttgttcaga acttgccttc tgcctgtcta cctcaggggc atttttataa aaagccccct
     1741 atcctcccct ttgatgatag ggcttaatga cttgtcctcg gtggtctcct aaccctagtc
     1801 cctgtttggg cttgctcctg ttgcctaccc cagcaccttg aaaactggat tgactgaggt
     1861 tatcgtcaca accttcctgg gggcaagggg agggtgggag tgggttcagc atgaagccca
     1921 gaaagagggg aaaagggaca tggaagagga gaggatttgt ggttggaaga gacggtcttg
     1981 gggcgggccc tccatcgcct ctacccttaa ctggctggga ccgggcagcg gagagtccgc
     2041 tgcaggtgtc ccgggtctgc gacctgacga gagaataaaa aagtttacta ccgaa
//
LOCUS       XM_032611763            3719 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus axonemal dynein light chain domain
            containing 1 (AXDND1), transcript variant X1, mRNA.
ACCESSION   XM_032611763
VERSION     XM_032611763.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3719
                     /gene="AXDND1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743374"
     CDS             190..3294
                     /gene="AXDND1"
                     /codon_start=1
                     /product="axonemal dynein light chain domain-containing
                     protein 1"
                     /protein_id="XP_032467654.1"
                     /db_xref="GeneID:116743374"
                     /translation="MSLPKTPSTSTPEGKNVKISASKEETGLPKLREKKSLVDPSKPF
                     LTSLQNEFIPQEVLLSLTYTANAGSCPENLLPPKKIKTPKGTLPRPVDHVWHNPIRRN
                     KFKYLIDHPVSLTGAGRDISFLYDVKYVKGETRENAVCPPQMDRSLQSRDGVLVPLKP
                     KKLTDTLIPEEFHIVSNTGVSGLECYDDKYTTLLTDSENRLLLFPSMKPNKRIEVVQL
                     NDVMDAMLERAGVENQAYTGPTKMHKLLHILKKEQTIYNTVFHELIRQVSVDCADRGE
                     LLSKIRERYVQMLDQIAWHMTDFYKDMVTQRVMDQRILEELYNFNNVIEELTRELCLV
                     QAHDMKLTKEAEKAHRALAQALLDAEKNARIVEEYHDLYTLQRGRMESDIKQLMAERD
                     IWNSATYELSVKVIERNKVMLAKRLYLNEKGWNKYAKHFIILLSTKDTADLALLQKLT
                     EKWRNLVNKFKQEVEQNEESTREKLQSVKDGLVKWQQFFRNNTGKDILSPSKENRFES
                     VVPDFKQWQKMLTEDKDKFSGDLLVSKYSCLKIIKHLQESWADIGLGIFSRHKSMEGK
                     LPPEQKHMEEIVKSTRRLYKEFEIRISGDNGISKILPSLVSSLEFCSFKLERLLKFPE
                     LLLEEWEGLNEKINEMKSQLDASLNVIGTVPQYIDVDSGSVLQAHIFNMIQQWLLKIG
                     SEVNDGNMELQRQMDELHIPMIQWMVNFLILMVPDFPDPDTVIKLEEESAEKRDLGIA
                     KLELDAIALAKMLSRHSIYLSSCCKEMVTAMALSKAGHLGKNPTKELNELDKMKRECY
                     EWITTCSHLLSGLKGRKIKLLTREEEWHLLGEEDTVKEVTTPKTDKLLKEVEENMEDK
                     KLEEEKEEEKAEEKPSTSTEKEKLIRVIGVDGNVHSQPLFGTDVLSSWRESANEGTLA
                     PRYLETMAVIECMQEKLIEVESRARQAEEKFDDANEKLHFTLIRNKELEKELEEILMK
                     YKDKESEGEEEENEGEREEEETSPVERASKSPKKDIYFLFSLSPLSLPMPPQQKQGTA
                     QGGF"
     misc_feature    805..>1059
                     /gene="AXDND1"
                     /note="Axonemal dynein light chain; Region:
                     Ax_dynein_light; pfam10211"
                     /db_xref="CDD:463000"
     misc_feature    <1210..>1650
                     /gene="AXDND1"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; Region: BAR; cl12013"
                     /db_xref="CDD:472257"
ORIGIN      
        1 caagacgtct ggcgagaagc atagtttaca ggtacgggct gcaagtgtcg gtttcccatc
       61 gcttctgatg cagaaacggt caatgtggca gccctgccaa atcccagtaa tgccgctgat
      121 ttgtttctag attagctttc tggaggggta tttcaaatta ctagagagtg ataggaggca
      181 ttgcttacta tgtcgctccc gaaaacgccc tcaacgtcaa cacctgaggg caaaaatgtg
      241 aaaatctctg catccaagga agagacagga cttcctaaac taagggagaa aaaaagtctg
      301 gtggatccgt cgaaaccgtt tcttacttcc cttcagaatg agttcatccc tcaggaagtt
      361 ctactttctc tgacctatac agccaatgct ggttcttgtc ctgaaaactt actgcctcct
      421 aagaaaatta aaaccccaaa gggtactctt ccacgccctg ttgaccacgt ctggcataac
      481 cctattagaa gaaataagtt caaatatctg attgaccatc ccgtttccct aacgggagct
      541 ggaagggata tttcttttct gtacgatgtt aaatatgtta aaggagagac tagggagaac
      601 gcagtttgtc ccccacaaat ggaccgttca ttacagtcac gtgatggtgt ccttgtgcct
      661 cttaagccaa agaaactaac agatactttg attcctgaag aatttcatat cgtgtcaaat
      721 acaggagttt caggtttgga gtgttatgat gacaaatata ctactctcct cacagacagt
      781 gaaaatagac tattgctctt cccatccatg aaacctaata aaagaataga agtggtccag
      841 ctgaatgatg tgatggatgc tatgctagag agggctggtg tggaaaatca ggcatataca
      901 gggccaacca agatgcacaa actacttcat atattgaaga aggaacagac catttataat
      961 acagtatttc atgaacttat tcgacaagtc agtgtggact gtgcagatag aggagaacta
     1021 ctatccaaaa tcagagagcg gtatgtacaa atgcttgatc aaattgcctg gcatatgact
     1081 gacttctaca aagacatggt aactcagcga gtgatggacc agcgcatttt agaagaactg
     1141 tacaatttta ataatgttat tgaggaactg accagggagc tgtgtttggt tcaggcacat
     1201 gatatgaaat taacaaagga agcagagaag gcccacagag ctttggcaca agctctttta
     1261 gatgctgaaa agaatgccag aattgtagaa gaatatcatg acttatatac gttacaaaga
     1321 gggaggatgg agagtgatat taaacagtta atggcagaaa gagatatctg gaactcagcc
     1381 acatatgaat tgtccgtaaa ggtaattgaa agaaataaag tcatgttggc taaaagactt
     1441 tacctcaatg aaaaaggctg gaataaatat gctaagcatt tcatcatact gctgtcaact
     1501 aaggacactg cagaccttgc actgttgcag aagttgacgg agaaatggag aaacttagtg
     1561 aataaattta aacaggaagt ggaacaaaat gaagagtcta caagagaaaa attgcaaagt
     1621 gttaaggatg gccttgtcaa atggcagcag ttcttcagaa ataatactgg aaaagacatt
     1681 ttatccccta gtaaagaaaa tagatttgaa tcagttgttc cagacttcaa gcagtggcaa
     1741 aagatgttga ctgaagacaa agacaaattt tctggggatc ttctagtgtc aaaatatagt
     1801 tgtctcaaga ttattaaaca tttacaggaa agctgggcag atattgggct tgggatattt
     1861 agtcgccata aaagtatgga gggaaagtta ccaccagagc agaagcacat ggaggaaatt
     1921 gtgaaaagta caagaagact ctacaaagaa tttgaaataa gaataagtgg ggataatggt
     1981 atctctaaaa ttcttccaag tttggttagt tctcttgaat tctgttcttt caagttggaa
     2041 aggctgctga agtttcctga actgcttctt gaagaatggg agggacttaa tgaaaaaatt
     2101 aatgaaatga aatctcagtt ggatgcatca ttaaacgtta ttggtactgt tccgcagtac
     2161 atagatgtgg attctggctc ggtactccaa gcacatatat ttaacatgat tcagcaatgg
     2221 cttttgaaga taggcagtga agttaacgat ggtaacatgg aacttcagcg ccaaatggat
     2281 gaattgcata tacccatgat tcaatggatg gtaaattttc tgattttaat ggtacctgac
     2341 tttcctgatc cagatactgt cataaagttg gaggaggaaa gtgctgaaaa acgtgaccta
     2401 ggaattgcca agttggagct agatgcgatt gccctggcaa aaatgttgtc ccgacattcc
     2461 atctatttga gcagttgttg caaagagatg gtaacagcta tggctctgag taaagcaggt
     2521 cacttaggaa aaaatcctac taaggaactt aatgaactgg ataagatgaa gagagaatgt
     2581 tatgagtgga tcaccacatg ctctcacctc ctttctggtc tcaaaggcag gaaaataaag
     2641 ttactgacac gtgaagaaga atggcaccta cttggagaag aggatactgt aaaagaagta
     2701 actacaccta aaacagacaa gcttcttaaa gaggttgaag aaaatatgga ggataagaaa
     2761 cttgaggagg aaaaggaaga agagaaagca gaagagaaac cttcaacatc tacagagaag
     2821 gaaaaactca ttcgagtcat tggagtagac ggaaatgtcc attcccaacc tctgtttgga
     2881 acagatgtat tgtcttcttg gagagaatca gctaatgaag gtacattggc cccaaggtat
     2941 cttgaaacaa tggctgtaat tgaatgcatg caggagaagt taatagaggt tgaaagcaga
     3001 gccagacaag cagaggagaa gtttgatgat gcgaatgaaa aacttcattt tacccttata
     3061 agaaataaag aactggagaa agaactagag gaaatactga tgaagtataa agacaaggaa
     3121 tctgaaggag aagaagaaga aaatgaagga gaaagagaag aagaagaaac cagcccagta
     3181 gaaagagcct caaaatctcc aaagaaagat atctactttc tgttttctct gtcacccctg
     3241 tctctaccta tgcctcccca gcaaaagcaa ggtacagcgc aaggagggtt ctaaatccag
     3301 aactcggact aaaaccactt acaggatgaa atccaaatag caaacatagg acactaggct
     3361 tcaccatggc ttctgtcact gtacccaccc cagatatctc tgcacttttg agctgacatt
     3421 gtggcttgat tgaagggact ccctttgcaa cagctaccag aaaagccatg acagacaact
     3481 cagggacatc ttctctttaa aagtcacagt gatggctgta aggaatcggt gtattagctt
     3541 atttccaaga ttaaaaatag gctgtgcaaa ggttttctag cctcttcaat tgatttccca
     3601 gcagaagtct atgaaaagtg tcagtttctg tcaagaaaat aatgcttttt gaggactttg
     3661 aactctgcag agaagagtgg caaagaaaaa gcattatttt ttcaatttaa ggagaggat
//
LOCUS       XM_032611764            3719 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus axonemal dynein light chain domain
            containing 1 (AXDND1), transcript variant X2, mRNA.
ACCESSION   XM_032611764
VERSION     XM_032611764.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3719
                     /gene="AXDND1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743374"
     CDS             190..3294
                     /gene="AXDND1"
                     /codon_start=1
                     /product="axonemal dynein light chain domain-containing
                     protein 1"
                     /protein_id="XP_032467655.1"
                     /db_xref="GeneID:116743374"
                     /translation="MSLPKTPSTSTPEGKNVKISASKEETGLPKLREKKSLVDPSKPF
                     LTSLQNEFIPQEVLLSLTYTANAGSCPENLLPPKKIKTPKGTLPRPVDHVWHNPIRRN
                     KFKYLIDHPVSLTGAGRDISFLYDVKYVKGETRENAVCPPQMDRSLQSRDGVLVPLKP
                     KKLTDTLIPEEFHIVSNTGVSGLECYDDKYTTLLTDSENRLLLFPSMKPNKRIEVVQL
                     NDVMDAMLERAGVENQAYTGPTKMHKLLHILKKEQTIYNTVFHELIRQVSVDCADRGE
                     LLSKIRERYVQMLDQIAWHMTDFYKDMVTQRVMDQRILEELYNFNNVIEELTRELCLV
                     QAHDMKLTKEAEKAHRALAQALLDAEKNARIVEEYHDLYTLQRGRMESDIKQLMAERD
                     IWNSATYELSVKVIERNKVMLAKRLYLNEKGWNKYAKHFIILLSTKDTADLALLQKLT
                     EKWRNLVNKFKQEVEQNEESTREKLQSVKDGLVKWQQFFRNNTGKDILSPSKENRFES
                     VVPDFKQWQKMLTEDKDKFSGDLLVSKYSCLKIIKHLQESWADIGLGIFSRHKSMEGK
                     LPPEQKHMEEIVKSTRRLYKEFEIRISGDNGISKILPSLVSSLEFCSFKLERLLKFPE
                     LLLEEWEGLNEKINEMKSQLDASLNVIGTVPQYIDVDSGSVLQAHIFNMIQQWLLKIG
                     SEVNDGNMELQRQMDELHIPMIQWMVNFLILMVPDFPDPDTVIKLEEESAEKRDLGIA
                     KLELDAIALAKMLSRHSIYLSSCCKEMVTAMALSKAGHLGKNPTKELNELDKMKRECY
                     EWITTCSHLLSGLKGRKIKLLTREEEWHLLGEEDTVKEVTTPKTDKLLKEVEENMEDK
                     KLEEEKEEEKAEEKPSTSTEKEKLIRVIGVDGNVHSQPLFGTDVLSSWRESANEGTLA
                     PRYLETMAVIECMQEKLIEVESRARQAEEKFDDANEKLHFTLIRNKELEKELEEILMK
                     YKDKESEGEEEENEGEREEEETSPVERASKSPKKDIYFLFSLSPLSLPMPPQQKQGTA
                     QGGF"
     misc_feature    805..>1059
                     /gene="AXDND1"
                     /note="Axonemal dynein light chain; Region:
                     Ax_dynein_light; pfam10211"
                     /db_xref="CDD:463000"
     misc_feature    <1210..>1650
                     /gene="AXDND1"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; Region: BAR; cl12013"
                     /db_xref="CDD:472257"
ORIGIN      
        1 ctgggtttct atgacgacac gcaggcgttt gggaaaaggt gcggctacaa gacgtctggc
       61 gagaagcata gtttacaggt caatgtggca gccctgccaa atcccagtaa tgccgctgat
      121 ttgtttctag attagctttc tggaggggta tttcaaatta ctagagagtg ataggaggca
      181 ttgcttacta tgtcgctccc gaaaacgccc tcaacgtcaa cacctgaggg caaaaatgtg
      241 aaaatctctg catccaagga agagacagga cttcctaaac taagggagaa aaaaagtctg
      301 gtggatccgt cgaaaccgtt tcttacttcc cttcagaatg agttcatccc tcaggaagtt
      361 ctactttctc tgacctatac agccaatgct ggttcttgtc ctgaaaactt actgcctcct
      421 aagaaaatta aaaccccaaa gggtactctt ccacgccctg ttgaccacgt ctggcataac
      481 cctattagaa gaaataagtt caaatatctg attgaccatc ccgtttccct aacgggagct
      541 ggaagggata tttcttttct gtacgatgtt aaatatgtta aaggagagac tagggagaac
      601 gcagtttgtc ccccacaaat ggaccgttca ttacagtcac gtgatggtgt ccttgtgcct
      661 cttaagccaa agaaactaac agatactttg attcctgaag aatttcatat cgtgtcaaat
      721 acaggagttt caggtttgga gtgttatgat gacaaatata ctactctcct cacagacagt
      781 gaaaatagac tattgctctt cccatccatg aaacctaata aaagaataga agtggtccag
      841 ctgaatgatg tgatggatgc tatgctagag agggctggtg tggaaaatca ggcatataca
      901 gggccaacca agatgcacaa actacttcat atattgaaga aggaacagac catttataat
      961 acagtatttc atgaacttat tcgacaagtc agtgtggact gtgcagatag aggagaacta
     1021 ctatccaaaa tcagagagcg gtatgtacaa atgcttgatc aaattgcctg gcatatgact
     1081 gacttctaca aagacatggt aactcagcga gtgatggacc agcgcatttt agaagaactg
     1141 tacaatttta ataatgttat tgaggaactg accagggagc tgtgtttggt tcaggcacat
     1201 gatatgaaat taacaaagga agcagagaag gcccacagag ctttggcaca agctctttta
     1261 gatgctgaaa agaatgccag aattgtagaa gaatatcatg acttatatac gttacaaaga
     1321 gggaggatgg agagtgatat taaacagtta atggcagaaa gagatatctg gaactcagcc
     1381 acatatgaat tgtccgtaaa ggtaattgaa agaaataaag tcatgttggc taaaagactt
     1441 tacctcaatg aaaaaggctg gaataaatat gctaagcatt tcatcatact gctgtcaact
     1501 aaggacactg cagaccttgc actgttgcag aagttgacgg agaaatggag aaacttagtg
     1561 aataaattta aacaggaagt ggaacaaaat gaagagtcta caagagaaaa attgcaaagt
     1621 gttaaggatg gccttgtcaa atggcagcag ttcttcagaa ataatactgg aaaagacatt
     1681 ttatccccta gtaaagaaaa tagatttgaa tcagttgttc cagacttcaa gcagtggcaa
     1741 aagatgttga ctgaagacaa agacaaattt tctggggatc ttctagtgtc aaaatatagt
     1801 tgtctcaaga ttattaaaca tttacaggaa agctgggcag atattgggct tgggatattt
     1861 agtcgccata aaagtatgga gggaaagtta ccaccagagc agaagcacat ggaggaaatt
     1921 gtgaaaagta caagaagact ctacaaagaa tttgaaataa gaataagtgg ggataatggt
     1981 atctctaaaa ttcttccaag tttggttagt tctcttgaat tctgttcttt caagttggaa
     2041 aggctgctga agtttcctga actgcttctt gaagaatggg agggacttaa tgaaaaaatt
     2101 aatgaaatga aatctcagtt ggatgcatca ttaaacgtta ttggtactgt tccgcagtac
     2161 atagatgtgg attctggctc ggtactccaa gcacatatat ttaacatgat tcagcaatgg
     2221 cttttgaaga taggcagtga agttaacgat ggtaacatgg aacttcagcg ccaaatggat
     2281 gaattgcata tacccatgat tcaatggatg gtaaattttc tgattttaat ggtacctgac
     2341 tttcctgatc cagatactgt cataaagttg gaggaggaaa gtgctgaaaa acgtgaccta
     2401 ggaattgcca agttggagct agatgcgatt gccctggcaa aaatgttgtc ccgacattcc
     2461 atctatttga gcagttgttg caaagagatg gtaacagcta tggctctgag taaagcaggt
     2521 cacttaggaa aaaatcctac taaggaactt aatgaactgg ataagatgaa gagagaatgt
     2581 tatgagtgga tcaccacatg ctctcacctc ctttctggtc tcaaaggcag gaaaataaag
     2641 ttactgacac gtgaagaaga atggcaccta cttggagaag aggatactgt aaaagaagta
     2701 actacaccta aaacagacaa gcttcttaaa gaggttgaag aaaatatgga ggataagaaa
     2761 cttgaggagg aaaaggaaga agagaaagca gaagagaaac cttcaacatc tacagagaag
     2821 gaaaaactca ttcgagtcat tggagtagac ggaaatgtcc attcccaacc tctgtttgga
     2881 acagatgtat tgtcttcttg gagagaatca gctaatgaag gtacattggc cccaaggtat
     2941 cttgaaacaa tggctgtaat tgaatgcatg caggagaagt taatagaggt tgaaagcaga
     3001 gccagacaag cagaggagaa gtttgatgat gcgaatgaaa aacttcattt tacccttata
     3061 agaaataaag aactggagaa agaactagag gaaatactga tgaagtataa agacaaggaa
     3121 tctgaaggag aagaagaaga aaatgaagga gaaagagaag aagaagaaac cagcccagta
     3181 gaaagagcct caaaatctcc aaagaaagat atctactttc tgttttctct gtcacccctg
     3241 tctctaccta tgcctcccca gcaaaagcaa ggtacagcgc aaggagggtt ctaaatccag
     3301 aactcggact aaaaccactt acaggatgaa atccaaatag caaacatagg acactaggct
     3361 tcaccatggc ttctgtcact gtacccaccc cagatatctc tgcacttttg agctgacatt
     3421 gtggcttgat tgaagggact ccctttgcaa cagctaccag aaaagccatg acagacaact
     3481 cagggacatc ttctctttaa aagtcacagt gatggctgta aggaatcggt gtattagctt
     3541 atttccaaga ttaaaaatag gctgtgcaaa ggttttctag cctcttcaat tgatttccca
     3601 gcagaagtct atgaaaagtg tcagtttctg tcaagaaaat aatgcttttt gaggactttg
     3661 aactctgcag agaagagtgg caaagaaaaa gcattatttt ttcaatttaa ggagaggat
//
LOCUS       XM_032611765            4503 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitogen-activated protein kinase kinase
            kinase 6 (MAP3K6), transcript variant X1, mRNA.
ACCESSION   XM_032611765
VERSION     XM_032611765.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4503
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4503
                     /gene="MAP3K6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743400"
     CDS             387..4283
                     /gene="MAP3K6"
                     /codon_start=1
                     /product="mitogen-activated protein kinase kinase kinase 6
                     isoform X1"
                     /protein_id="XP_032467656.1"
                     /db_xref="GeneID:116743400"
                     /translation="MAGQCLRSGAAERAGSCWQDPLAEALSRGRPLAASPGRGCARSR
                     PLSVVYVLTRETQHLAEPETGAEAEPLPLRCLREACAQLPGPRPRPQLRSLPFGTLAL
                     GDTSALDSFYNADVVVLEVSSSLAQPSLFYHLGVRESFSMTNNVLLCSQADLPDLQAL
                     REDIFQKNSDCVGSYTLIPYVVTATGRVLCGDAGLLRGLADGLVQAGVGTEVLLTPLV
                     GRLARLLETTPTDSCGYFRETIRQDIRRARERFSGQQLRQELARLQRRLDSVELLSPD
                     IIINLLLSYRDVQDYSAIIELVETLQALPTCDVAEQHNVCFHYTFALNRRNRPGDREK
                     ALAVLLPLVQFEGSVAPDLYCMCGRIYKDMFFSSGFQDAGHREQAYHWYRKAFDVEPS
                     LHSGINAAVLLIAAGQRFEDSKELRLIGMKLGCLLARKGCVEKMQYYWDVGFYLGAQI
                     LVNDLTQVALAAEQLYKLNAPIWYLVSVMETFLLYQHFRPTLEPPGETPHHAHFWLHF
                     LLQSCQPLKMTSPQGEQCLVLVLEMNKVLLPARLEAHGTNPVSTVTVSLLEPGKQVIS
                     PDVPSSWTFPVASISGVSVSNRDERCCFLYALPPAQDVQLCFPSGGHCQWFCGLIQAL
                     VKNPDSTAAAEEAEGGGEVLEFDYEYTESGERLVLGKGTYGVVYAGRDRRTRVRIAIK
                     EIPERDSRFSQPLHEEIALHKRLRHKNIVRYLGSASQGGYLKIFMEEVPGGSLSSLLR
                     SVWGPLQDNESTISFYIRQILQGLSYLHDNCIVHRDIKGDNVLINTFSGLLKISDFGT
                     SKRLAGITPCTETFAGTLQYMAPEIIDQGPRGYGKAADIWSLGCTVIEMATGRPPFHE
                     LGSPQAAMFQVGMYKVHPPMPSSLSAEAQAFLLRTFEPDPRLRASAQALLEDPFLQPG
                     KRSRNPGSPQYALRSSDAPSASPTPLADLTSQSQTFPRPQAPSQHPPSPPKRWLSYGD
                     TSQLRVPEEPGAEEPASPEESSGLSLLHQESKRRAMLATVLEQELQALAESLCLEQEQ
                     GSHLGRNHVEQLLRCLRAHIHTPNRRQLAQELQELQGQLRAQGLGPEILQGPLFAFPD
                     AVKQILHRRQIRPHWMFVLDSLLSRAVLAALAVLAPEAEKEAVPPKSEESNKEESQQK
                     QQETPVRRSPLPGEPEQGTPPLMVQLGLLRAETDRLRDVLAEKERECQALVQLTLQRV
                     SGEARTWSLASEPPAALTVDHGLVRWLQELNVDSGTIRTLLNHSFTFHALLTCATRDD
                     LIYTHIRGGMICRIWRAILAWRAKSTPVTPGPREAE"
     misc_feature    609..731
                     /gene="MAP3K6"
                     /note="Deoxyribohydrolase (DRHyd) domain of the ASK
                     signalosome; Region: DRHyd-ASK; pfam20309"
                     /db_xref="CDD:466459"
     misc_feature    774..1910
                     /gene="MAP3K6"
                     /note="MAP3K TRAFs-binding domain; Region: MAP3K_TRAF_bd;
                     pfam13281"
                     /db_xref="CDD:463827"
     misc_feature    1959..2261
                     /gene="MAP3K6"
                     /note="ASK kinase PH domain; Region: ASK_PH; pfam19039"
                     /db_xref="CDD:465956"
     misc_feature    2316..3119
                     /gene="MAP3K6"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Apoptosis signal-regulating kinase; Region: STKc_ASK;
                     cd06624"
                     /db_xref="CDD:270794"
     misc_feature    order(2361..2375,2385..2387,2424..2426,2430..2432,
                     2517..2519,2565..2576,2583..2588,2595..2597,2712..2714,
                     2718..2729,2733..2735,2766..2771,2778..2780,2820..2831,
                     2835..2837,2922..2924,2949..2951)
                     /gene="MAP3K6"
                     /note="active site"
                     /db_xref="CDD:270794"
     misc_feature    order(2361..2375,2385..2387,2424..2426,2430..2432,
                     2517..2519,2565..2576,2580..2588,2595..2597,2724..2729,
                     2733..2735,2766..2774)
                     /gene="MAP3K6"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270794"
     misc_feature    order(2370..2375,2712..2714,2718..2726,2778..2780,
                     2820..2831,2835..2837,2922..2924,2949..2951)
                     /gene="MAP3K6"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270794"
     misc_feature    2766..2837
                     /gene="MAP3K6"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270794"
     misc_feature    3375..3725
                     /gene="MAP3K6"
                     /note="HisK-N-like globin domain of the ASK signalosome;
                     Region: HisK-N-like; pfam20302"
                     /db_xref="CDD:466452"
ORIGIN      
        1 tatacatgtg agggcaggag agagtgactg ctcgcgctct cctgcggaat ccgggtggtg
       61 agcactgcct gaccgattct cgggattccc ccacgtgact ctgagtcgcg gatcaccgga
      121 tgcccaagat tccctggacc ccaatccccg atttcagatc ctcaggacct tacaagtcag
      181 aggccggatt tcgccctgga caccagattc ccaaacggga cctccggccg gacttcggat
      241 ctccagatct ccagatcttc agatcctgta ggagattccc gatcctgacc tgattcccga
      301 tcccgagatc ccggtatctg ttgtctctgg ctcctgtccc gccctgggtg cccaaagccc
      361 ggcgcccgac gcccgagcgc ccccgcatgg cggggcagtg cctgaggtcc ggagccgcgg
      421 agcgcgccgg cagctgctgg caggacccgc tggccgaggc actgagccgg ggccggccgc
      481 tcgcggcgtc cccgggccgg ggctgcgcga gaagccggcc tcttagcgtg gtatacgtgt
      541 tgacccggga gacgcagcac ttggcggaac ccgagactgg agccgaggcg gagccgctgc
      601 ctctgcgctg cctgcgtgag gcctgcgcgc agctccccgg accgcggcca cgacctcagc
      661 tgcgcagcct gccttttggg accctggcgc tgggagacac ctcagcgctc gattccttct
      721 acaacgcgga tgtggtggtg ctggaggtga gcagctccct ggcgcagccc tccctgttct
      781 accatctggg tgtgcgggag agcttcagca tgaccaacaa cgtgctcctc tgctcccagg
      841 ccgacctccc tgacctgcag gccctgcggg aggacatttt ccagaagaac tcggattgcg
      901 ttggcagcta cacgctgatc ccctatgtgg tgacagccac tggtcgggtg ctatgtggag
      961 atgcgggcct cctgaggggc ctggctgacg gcctggtaca ggctggggtg ggcaccgagg
     1021 tgctgctcac acccctggtg ggccggcttg cccgcctgct ggagaccacg cccacggact
     1081 cctgtggcta tttccgggag accattcggc aggacatccg gcgggcgagg gagcggttca
     1141 gcgggcagca gctgcggcag gagctggctc gcctgcagcg gagactggac agcgtagagc
     1201 tgctcagccc tgacatcatc atcaacctgc tgctctccta ccgtgatgtg caggactact
     1261 cagccatcat tgagctggtg gagacgctgc aggccttgcc cacctgtgac gtggctgagc
     1321 agcacaatgt ctgcttccac tacacatttg ccctcaaccg gaggaacaga cctggggacc
     1381 gggagaaggc actggctgtg ctgctgccac tggtacagtt tgagggctca gtggcacctg
     1441 acctatattg catgtgtggc cgtatctata aggacatgtt cttcagctcc ggcttccagg
     1501 atgctgggca ccgggagcag gcctatcact ggtatcgcaa ggcttttgat gtagagccca
     1561 gcctccactc gggcatcaat gcagctgtgc ttctcattgc cgctgggcag cgctttgagg
     1621 actccaagga gctccggctc ataggcatga agctgggctg cctgctggcc cgaaaaggct
     1681 gtgtggagaa gatgcagtat tactgggatg ttggcttcta cctgggagct cagatccttg
     1741 tcaatgacct cacgcaggtg gcactggctg cagagcagct gtacaagctc aatgccccca
     1801 tatggtacct ggtgtctgtg atggaaacct tcctgctgta ccagcacttc agacccacac
     1861 tagagcctcc tggagaaacc ccacaccacg cccacttctg gctccacttt ttgctacagt
     1921 cctgccagcc actcaagatg acttctcccc aaggggagca gtgcttggtg ctggtcctgg
     1981 agatgaataa ggtgcttcta ccggccaggc tggaggctca tggtaccaac ccggtgagca
     2041 cagtgacggt gagcctgctg gagcccggta agcaggtgat atcgccggac gttccctcca
     2101 gctggacctt cccggtggcc tccatcagcg gtgtcagcgt gtcgaatcga gacgagcgct
     2161 gctgcttcct ctacgcgctt cccccggctc aggacgtcca gctgtgcttc cccagcggag
     2221 ggcactgcca gtggttctgc gggctgatcc aggccttggt gaagaatccg gactccacgg
     2281 cggccgcaga ggaggcggag ggcggagggg aggtattgga gtttgattat gagtacacgg
     2341 agtcgggaga gcggctggtg ctgggcaagg gcacctacgg ggtggtgtac gccggccgtg
     2401 atcggcgcac gcgggtgcgc atcgccatca aggagatccc ggagcgggac agcaggttct
     2461 ctcagccact gcatgaagag atcgctctgc acaaacgcct gcgccacaag aacatcgtgc
     2521 gctatctggg ctcagccagt cagggcggct acctcaagat cttcatggag gaagtgcctg
     2581 gaggcagcct gtcctccttg ctgcggtcag tgtggggacc cctgcaggac aacgagagca
     2641 ccatcagttt ctacatccgc cagatcctgc agggactcag ctacctgcac gacaactgca
     2701 tcgtgcatcg agatatcaag ggggacaatg tactgatcaa caccttcagc gggctgctca
     2761 agatttccga cttcggtacc tccaagcgac tagccggcat cacaccctgc actgagacct
     2821 tcgcagggac cctacagtat atggccccag aaatcattga ccagggccca cgagggtatg
     2881 ggaaggcggc ggacatctgg tcattgggct gcactgttat cgagatggcc acaggtcgcc
     2941 cacccttcca cgagctgggg agcccgcagg ctgccatgtt tcaggtgggc atgtacaagg
     3001 tgcacccacc aatgcccagt tctctgtcag ccgaggctca agccttcctc ctccgaactt
     3061 ttgagccaga tccacgcctc cgagccagtg cccaagcact gctggaggac cccttcctgc
     3121 aacctgggaa gaggagccgc aaccccggct ccccccagta tgctctaagg tcctcagacg
     3181 ccccttccgc cagccccact cctttagctg acttgacctc ccagtcccag acattcccgc
     3241 ggcctcaggc accctctcag caccctccca gtccccccaa gcgctggctc agttatgggg
     3301 acaccagcca gctccgggtg cctgaggagc ctggggccga ggagcccgcg tcccctgagg
     3361 agagctcggg gctgagcctc ctgcaccaag agagcaagcg ccgggccatg ttggcaacgg
     3421 tactggagca ggagctacag gccctggcag agagtctgtg cctggagcag gaacagggtt
     3481 cccatctggg gaggaatcat gtggaacagc tactgcgctg cctcagggcg cacatccaca
     3541 ctcccaaccg ccggcagctg gcccaggagc tgcaggagct gcaagggcag cttcgggccc
     3601 agggccttgg gcccgagatt ctgcaaggac cgctcttcgc cttcccggat gcggtgaagc
     3661 agatcctcca caggcgccag atccgcccac actggatgtt cgtgctggac tcgctgctca
     3721 gccgcgctgt gctggcagcc ctggctgttc tggccccaga ggcggagaag gaggcagtcc
     3781 caccgaagtc ggaggaatcc aataaagaag agtcccagca gaagcagcag gagaccccag
     3841 tccggcggag cccgctccca ggggaacccg agcagggaac cccacctttg atggtgcagc
     3901 tgggcctctt gcgagcagag accgataggc taagagatgt cctggctgag aaggaacggg
     3961 agtgccaggc cctggtgcag ctaaccctac agcgcgtcag tggggaggcc aggacctggt
     4021 ccctggcctc agagccccca gctgctctca cagtggacca tggcctggtg cggtggctac
     4081 aggaactgaa tgtggattca ggcaccatcc ggacgctact gaaccacagc ttcaccttcc
     4141 atgccttact gacctgtgcc actagagatg acctcatcta cacacacatc aggggaggga
     4201 tgatatgccg catctggaga gccatcttgg catggcgagc aaagtccacg ccagttaccc
     4261 ctggcccgcg ggaggctgaa tgaggacatc agagacggga ggccagaccc aaggatggat
     4321 gaatgcagga aacacagagg cttctgacac acctgcccca ggacccaggg gcaactggag
     4381 gaggccaggt gggtgggggg cagggtaggg cccaagccta gccccagtgg ggggaaccaa
     4441 ccagagaggt gcctcaagct cacacggagt gccggcaagc agtctattaa acaatacttt
     4501 tgt
//
LOCUS       XM_032611774            4410 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitogen-activated protein kinase kinase
            kinase 6 (MAP3K6), transcript variant X2, mRNA.
ACCESSION   XM_032611774
VERSION     XM_032611774.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4410
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4410
                     /gene="MAP3K6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743400"
     CDS             387..4190
                     /gene="MAP3K6"
                     /codon_start=1
                     /product="mitogen-activated protein kinase kinase kinase 6
                     isoform X2"
                     /protein_id="XP_032467665.1"
                     /db_xref="GeneID:116743400"
                     /translation="MAGQCLRSGAAERAGSCWQDPLAEALSRGRPLAASPGRGCARSR
                     PLSVVYVLTRETQHLAEPETGAEAEPLPLRCLREACAQLPGPRPRPQLRSLPFGTLAL
                     GDTSALDSFYNADVVVLEADLPDLQALREDIFQKNSDCVGSYTLIPYVVTATGRVLCG
                     DAGLLRGLADGLVQAGVGTEVLLTPLVGRLARLLETTPTDSCGYFRETIRQDIRRARE
                     RFSGQQLRQELARLQRRLDSVELLSPDIIINLLLSYRDVQDYSAIIELVETLQALPTC
                     DVAEQHNVCFHYTFALNRRNRPGDREKALAVLLPLVQFEGSVAPDLYCMCGRIYKDMF
                     FSSGFQDAGHREQAYHWYRKAFDVEPSLHSGINAAVLLIAAGQRFEDSKELRLIGMKL
                     GCLLARKGCVEKMQYYWDVGFYLGAQILVNDLTQVALAAEQLYKLNAPIWYLVSVMET
                     FLLYQHFRPTLEPPGETPHHAHFWLHFLLQSCQPLKMTSPQGEQCLVLVLEMNKVLLP
                     ARLEAHGTNPVSTVTVSLLEPGKQVISPDVPSSWTFPVASISGVSVSNRDERCCFLYA
                     LPPAQDVQLCFPSGGHCQWFCGLIQALVKNPDSTAAAEEAEGGGEVLEFDYEYTESGE
                     RLVLGKGTYGVVYAGRDRRTRVRIAIKEIPERDSRFSQPLHEEIALHKRLRHKNIVRY
                     LGSASQGGYLKIFMEEVPGGSLSSLLRSVWGPLQDNESTISFYIRQILQGLSYLHDNC
                     IVHRDIKGDNVLINTFSGLLKISDFGTSKRLAGITPCTETFAGTLQYMAPEIIDQGPR
                     GYGKAADIWSLGCTVIEMATGRPPFHELGSPQAAMFQVGMYKVHPPMPSSLSAEAQAF
                     LLRTFEPDPRLRASAQALLEDPFLQPGKRSRNPGSPQYALRSSDAPSASPTPLADLTS
                     QSQTFPRPQAPSQHPPSPPKRWLSYGDTSQLRVPEEPGAEEPASPEESSGLSLLHQES
                     KRRAMLATVLEQELQALAESLCLEQEQGSHLGRNHVEQLLRCLRAHIHTPNRRQLAQE
                     LQELQGQLRAQGLGPEILQGPLFAFPDAVKQILHRRQIRPHWMFVLDSLLSRAVLAAL
                     AVLAPEAEKEAVPPKSEESNKEESQQKQQETPVRRSPLPGEPEQGTPPLMVQLGLLRA
                     ETDRLRDVLAEKERECQALVQLTLQRVSGEARTWSLASEPPAALTVDHGLVRWLQELN
                     VDSGTIRTLLNHSFTFHALLTCATRDDLIYTHIRGGMICRIWRAILAWRAKSTPVTPG
                     PREAE"
     misc_feature    609..731
                     /gene="MAP3K6"
                     /note="Deoxyribohydrolase (DRHyd) domain of the ASK
                     signalosome; Region: DRHyd-ASK; pfam20309"
                     /db_xref="CDD:466459"
     misc_feature    750..1817
                     /gene="MAP3K6"
                     /note="MAP3K TRAFs-binding domain; Region: MAP3K_TRAF_bd;
                     pfam13281"
                     /db_xref="CDD:463827"
     misc_feature    1866..2168
                     /gene="MAP3K6"
                     /note="ASK kinase PH domain; Region: ASK_PH; pfam19039"
                     /db_xref="CDD:465956"
     misc_feature    2223..3026
                     /gene="MAP3K6"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Apoptosis signal-regulating kinase; Region: STKc_ASK;
                     cd06624"
                     /db_xref="CDD:270794"
     misc_feature    order(2268..2282,2292..2294,2331..2333,2337..2339,
                     2424..2426,2472..2483,2490..2495,2502..2504,2619..2621,
                     2625..2636,2640..2642,2673..2678,2685..2687,2727..2738,
                     2742..2744,2829..2831,2856..2858)
                     /gene="MAP3K6"
                     /note="active site"
                     /db_xref="CDD:270794"
     misc_feature    order(2268..2282,2292..2294,2331..2333,2337..2339,
                     2424..2426,2472..2483,2487..2495,2502..2504,2631..2636,
                     2640..2642,2673..2681)
                     /gene="MAP3K6"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270794"
     misc_feature    order(2277..2282,2619..2621,2625..2633,2685..2687,
                     2727..2738,2742..2744,2829..2831,2856..2858)
                     /gene="MAP3K6"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270794"
     misc_feature    2673..2744
                     /gene="MAP3K6"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270794"
     misc_feature    3282..3632
                     /gene="MAP3K6"
                     /note="HisK-N-like globin domain of the ASK signalosome;
                     Region: HisK-N-like; pfam20302"
                     /db_xref="CDD:466452"
ORIGIN      
        1 tatacatgtg agggcaggag agagtgactg ctcgcgctct cctgcggaat ccgggtggtg
       61 agcactgcct gaccgattct cgggattccc ccacgtgact ctgagtcgcg gatcaccgga
      121 tgcccaagat tccctggacc ccaatccccg atttcagatc ctcaggacct tacaagtcag
      181 aggccggatt tcgccctgga caccagattc ccaaacggga cctccggccg gacttcggat
      241 ctccagatct ccagatcttc agatcctgta ggagattccc gatcctgacc tgattcccga
      301 tcccgagatc ccggtatctg ttgtctctgg ctcctgtccc gccctgggtg cccaaagccc
      361 ggcgcccgac gcccgagcgc ccccgcatgg cggggcagtg cctgaggtcc ggagccgcgg
      421 agcgcgccgg cagctgctgg caggacccgc tggccgaggc actgagccgg ggccggccgc
      481 tcgcggcgtc cccgggccgg ggctgcgcga gaagccggcc tcttagcgtg gtatacgtgt
      541 tgacccggga gacgcagcac ttggcggaac ccgagactgg agccgaggcg gagccgctgc
      601 ctctgcgctg cctgcgtgag gcctgcgcgc agctccccgg accgcggcca cgacctcagc
      661 tgcgcagcct gccttttggg accctggcgc tgggagacac ctcagcgctc gattccttct
      721 acaacgcgga tgtggtggtg ctggaggccg acctccctga cctgcaggcc ctgcgggagg
      781 acattttcca gaagaactcg gattgcgttg gcagctacac gctgatcccc tatgtggtga
      841 cagccactgg tcgggtgcta tgtggagatg cgggcctcct gaggggcctg gctgacggcc
      901 tggtacaggc tggggtgggc accgaggtgc tgctcacacc cctggtgggc cggcttgccc
      961 gcctgctgga gaccacgccc acggactcct gtggctattt ccgggagacc attcggcagg
     1021 acatccggcg ggcgagggag cggttcagcg ggcagcagct gcggcaggag ctggctcgcc
     1081 tgcagcggag actggacagc gtagagctgc tcagccctga catcatcatc aacctgctgc
     1141 tctcctaccg tgatgtgcag gactactcag ccatcattga gctggtggag acgctgcagg
     1201 ccttgcccac ctgtgacgtg gctgagcagc acaatgtctg cttccactac acatttgccc
     1261 tcaaccggag gaacagacct ggggaccggg agaaggcact ggctgtgctg ctgccactgg
     1321 tacagtttga gggctcagtg gcacctgacc tatattgcat gtgtggccgt atctataagg
     1381 acatgttctt cagctccggc ttccaggatg ctgggcaccg ggagcaggcc tatcactggt
     1441 atcgcaaggc ttttgatgta gagcccagcc tccactcggg catcaatgca gctgtgcttc
     1501 tcattgccgc tgggcagcgc tttgaggact ccaaggagct ccggctcata ggcatgaagc
     1561 tgggctgcct gctggcccga aaaggctgtg tggagaagat gcagtattac tgggatgttg
     1621 gcttctacct gggagctcag atccttgtca atgacctcac gcaggtggca ctggctgcag
     1681 agcagctgta caagctcaat gcccccatat ggtacctggt gtctgtgatg gaaaccttcc
     1741 tgctgtacca gcacttcaga cccacactag agcctcctgg agaaacccca caccacgccc
     1801 acttctggct ccactttttg ctacagtcct gccagccact caagatgact tctccccaag
     1861 gggagcagtg cttggtgctg gtcctggaga tgaataaggt gcttctaccg gccaggctgg
     1921 aggctcatgg taccaacccg gtgagcacag tgacggtgag cctgctggag cccggtaagc
     1981 aggtgatatc gccggacgtt ccctccagct ggaccttccc ggtggcctcc atcagcggtg
     2041 tcagcgtgtc gaatcgagac gagcgctgct gcttcctcta cgcgcttccc ccggctcagg
     2101 acgtccagct gtgcttcccc agcggagggc actgccagtg gttctgcggg ctgatccagg
     2161 ccttggtgaa gaatccggac tccacggcgg ccgcagagga ggcggagggc ggaggggagg
     2221 tattggagtt tgattatgag tacacggagt cgggagagcg gctggtgctg ggcaagggca
     2281 cctacggggt ggtgtacgcc ggccgtgatc ggcgcacgcg ggtgcgcatc gccatcaagg
     2341 agatcccgga gcgggacagc aggttctctc agccactgca tgaagagatc gctctgcaca
     2401 aacgcctgcg ccacaagaac atcgtgcgct atctgggctc agccagtcag ggcggctacc
     2461 tcaagatctt catggaggaa gtgcctggag gcagcctgtc ctccttgctg cggtcagtgt
     2521 ggggacccct gcaggacaac gagagcacca tcagtttcta catccgccag atcctgcagg
     2581 gactcagcta cctgcacgac aactgcatcg tgcatcgaga tatcaagggg gacaatgtac
     2641 tgatcaacac cttcagcggg ctgctcaaga tttccgactt cggtacctcc aagcgactag
     2701 ccggcatcac accctgcact gagaccttcg cagggaccct acagtatatg gccccagaaa
     2761 tcattgacca gggcccacga gggtatggga aggcggcgga catctggtca ttgggctgca
     2821 ctgttatcga gatggccaca ggtcgcccac ccttccacga gctggggagc ccgcaggctg
     2881 ccatgtttca ggtgggcatg tacaaggtgc acccaccaat gcccagttct ctgtcagccg
     2941 aggctcaagc cttcctcctc cgaacttttg agccagatcc acgcctccga gccagtgccc
     3001 aagcactgct ggaggacccc ttcctgcaac ctgggaagag gagccgcaac cccggctccc
     3061 cccagtatgc tctaaggtcc tcagacgccc cttccgccag ccccactcct ttagctgact
     3121 tgacctccca gtcccagaca ttcccgcggc ctcaggcacc ctctcagcac cctcccagtc
     3181 cccccaagcg ctggctcagt tatggggaca ccagccagct ccgggtgcct gaggagcctg
     3241 gggccgagga gcccgcgtcc cctgaggaga gctcggggct gagcctcctg caccaagaga
     3301 gcaagcgccg ggccatgttg gcaacggtac tggagcagga gctacaggcc ctggcagaga
     3361 gtctgtgcct ggagcaggaa cagggttccc atctggggag gaatcatgtg gaacagctac
     3421 tgcgctgcct cagggcgcac atccacactc ccaaccgccg gcagctggcc caggagctgc
     3481 aggagctgca agggcagctt cgggcccagg gccttgggcc cgagattctg caaggaccgc
     3541 tcttcgcctt cccggatgcg gtgaagcaga tcctccacag gcgccagatc cgcccacact
     3601 ggatgttcgt gctggactcg ctgctcagcc gcgctgtgct ggcagccctg gctgttctgg
     3661 ccccagaggc ggagaaggag gcagtcccac cgaagtcgga ggaatccaat aaagaagagt
     3721 cccagcagaa gcagcaggag accccagtcc ggcggagccc gctcccaggg gaacccgagc
     3781 agggaacccc acctttgatg gtgcagctgg gcctcttgcg agcagagacc gataggctaa
     3841 gagatgtcct ggctgagaag gaacgggagt gccaggccct ggtgcagcta accctacagc
     3901 gcgtcagtgg ggaggccagg acctggtccc tggcctcaga gcccccagct gctctcacag
     3961 tggaccatgg cctggtgcgg tggctacagg aactgaatgt ggattcaggc accatccgga
     4021 cgctactgaa ccacagcttc accttccatg ccttactgac ctgtgccact agagatgacc
     4081 tcatctacac acacatcagg ggagggatga tatgccgcat ctggagagcc atcttggcat
     4141 ggcgagcaaa gtccacgcca gttacccctg gcccgcggga ggctgaatga ggacatcaga
     4201 gacgggaggc cagacccaag gatggatgaa tgcaggaaac acagaggctt ctgacacacc
     4261 tgccccagga cccaggggca actggaggag gccaggtggg tggggggcag ggtagggccc
     4321 aagcctagcc ccagtggggg gaaccaacca gagaggtgcc tcaagctcac acggagtgcc
     4381 ggcaagcagt ctattaaaca atacttttgt
//
LOCUS       XM_032611781            3461 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitogen-activated protein kinase kinase
            kinase 6 (MAP3K6), transcript variant X3, mRNA.
ACCESSION   XM_032611781
VERSION     XM_032611781.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3461
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3461
                     /gene="MAP3K6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743400"
     CDS             1..3378
                     /gene="MAP3K6"
                     /codon_start=1
                     /product="mitogen-activated protein kinase kinase kinase 6
                     isoform X3"
                     /protein_id="XP_032467672.1"
                     /db_xref="GeneID:116743400"
                     /translation="MAGQCLRSGAAERAGSCWQDPLAEALSRGRPLAASPGRGCARSR
                     PLSVVYVLTRETQHLAEPETGAEAEPLPLRCLREACAQLPGPRPRPQLRSLPFGTLAL
                     GDTSALDSFYNADVVVLEVSSSLAQPSLFYHLGVRESFSMTNNVLLCSQADLPDLQAL
                     REDIFQKNSDCVGSYTLIPYVVTATGRVLCGDAGLLRGLADGLVQAGVGTEVLLTPLV
                     GRLARLLETTPTDSCGYFRETIRQDIRRARERFSGQQLRQELARLQRRLDSVELLSPD
                     IIINLLLSYRDVQDYSAIIELVETLQALPTCDVAEQHNVCFHYTFALNRRNRPGDREK
                     ALAVLLPLVQFEGSVAPDLYCMCGRIYKDMFFSSGFQDAGHREQAYHWYRKAFDVEPS
                     LHSGINAAVLLIAAGQRFEDSKELRLIGMKLGCLLARKGCVEKMQYYWDVGFYLGAQI
                     LVNDLTQVALAAEQLYKLNAPIWYLVSVMETFLLYQHFRPTLEPPGETPHHAHFWLHF
                     LLQSCQPLKMTSPQGEQCLVLVLEMNKVLLPARLEAHGTNPVSTVTVSLLEPGKQVIS
                     PDVPSSWTFPVASISGVSVSNRDERCCFLYALPPAQDVQLCFPSGGHCQWFCGLIQAL
                     VKNPDSTAAAEEAEGGGEVLEFDYEYTESGERLVLGKGTYGVVYAGRDRRTRVRIAIK
                     EIPERDSRFSQPLHEEIALHKRLRHKNIVRYLGSASQGGYLKIFMEEVPGGSLSSLLR
                     SVWGPLQDNESTISFYIRQILQGLSYLHDNCIVHRDIKGDNVLINTFSGLLKISDFGT
                     SKRLAGITPCTETFAGTLQYMAPEIIDQGPRGYGKAADIWSLGCTVIEMATGRPPFHE
                     LGSPQAAMFQVGMYKVHPPMPSSLSAEAQAFLLRTFEPDPRLRASAQALLEDPFLQPG
                     KRSRNPGSPQYALRSSDAPSASPTPLADLTSQSQTFPRPQAPSQHPPSPPKRWLSYGD
                     TSQLRVPEEPGAEEPASPEESSGLSLLHQESKRRAMLATVLEQELQALAESLCLEQEQ
                     GSHLGRNHVEQLLRCLRAHIHTPNRRQLAQELQELQGQLRAQGLGPEILQGPLFAFPD
                     AVKQILHRRQIRPHWMFVLDSLLSRAVLAALAVLAPG"
     misc_feature    223..345
                     /gene="MAP3K6"
                     /note="Deoxyribohydrolase (DRHyd) domain of the ASK
                     signalosome; Region: DRHyd-ASK; pfam20309"
                     /db_xref="CDD:466459"
     misc_feature    388..1524
                     /gene="MAP3K6"
                     /note="MAP3K TRAFs-binding domain; Region: MAP3K_TRAF_bd;
                     pfam13281"
                     /db_xref="CDD:463827"
     misc_feature    1573..1875
                     /gene="MAP3K6"
                     /note="ASK kinase PH domain; Region: ASK_PH; pfam19039"
                     /db_xref="CDD:465956"
     misc_feature    1930..2733
                     /gene="MAP3K6"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Apoptosis signal-regulating kinase; Region: STKc_ASK;
                     cd06624"
                     /db_xref="CDD:270794"
     misc_feature    order(1975..1989,1999..2001,2038..2040,2044..2046,
                     2131..2133,2179..2190,2197..2202,2209..2211,2326..2328,
                     2332..2343,2347..2349,2380..2385,2392..2394,2434..2445,
                     2449..2451,2536..2538,2563..2565)
                     /gene="MAP3K6"
                     /note="active site"
                     /db_xref="CDD:270794"
     misc_feature    order(1975..1989,1999..2001,2038..2040,2044..2046,
                     2131..2133,2179..2190,2194..2202,2209..2211,2338..2343,
                     2347..2349,2380..2388)
                     /gene="MAP3K6"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270794"
     misc_feature    order(1984..1989,2326..2328,2332..2340,2392..2394,
                     2434..2445,2449..2451,2536..2538,2563..2565)
                     /gene="MAP3K6"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270794"
     misc_feature    2380..2451
                     /gene="MAP3K6"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270794"
     misc_feature    2989..3339
                     /gene="MAP3K6"
                     /note="HisK-N-like globin domain of the ASK signalosome;
                     Region: HisK-N-like; pfam20302"
                     /db_xref="CDD:466452"
ORIGIN      
        1 atggcggggc agtgcctgag gtccggagcc gcggagcgcg ccggcagctg ctggcaggac
       61 ccgctggccg aggcactgag ccggggccgg ccgctcgcgg cgtccccggg ccggggctgc
      121 gcgagaagcc ggcctcttag cgtggtatac gtgttgaccc gggagacgca gcacttggcg
      181 gaacccgaga ctggagccga ggcggagccg ctgcctctgc gctgcctgcg tgaggcctgc
      241 gcgcagctcc ccggaccgcg gccacgacct cagctgcgca gcctgccttt tgggaccctg
      301 gcgctgggag acacctcagc gctcgattcc ttctacaacg cggatgtggt ggtgctggag
      361 gtgagcagct ccctggcgca gccctccctg ttctaccatc tgggtgtgcg ggagagcttc
      421 agcatgacca acaacgtgct cctctgctcc caggccgacc tccctgacct gcaggccctg
      481 cgggaggaca ttttccagaa gaactcggat tgcgttggca gctacacgct gatcccctat
      541 gtggtgacag ccactggtcg ggtgctatgt ggagatgcgg gcctcctgag gggcctggct
      601 gacggcctgg tacaggctgg ggtgggcacc gaggtgctgc tcacacccct ggtgggccgg
      661 cttgcccgcc tgctggagac cacgcccacg gactcctgtg gctatttccg ggagaccatt
      721 cggcaggaca tccggcgggc gagggagcgg ttcagcgggc agcagctgcg gcaggagctg
      781 gctcgcctgc agcggagact ggacagcgta gagctgctca gccctgacat catcatcaac
      841 ctgctgctct cctaccgtga tgtgcaggac tactcagcca tcattgagct ggtggagacg
      901 ctgcaggcct tgcccacctg tgacgtggct gagcagcaca atgtctgctt ccactacaca
      961 tttgccctca accggaggaa cagacctggg gaccgggaga aggcactggc tgtgctgctg
     1021 ccactggtac agtttgaggg ctcagtggca cctgacctat attgcatgtg tggccgtatc
     1081 tataaggaca tgttcttcag ctccggcttc caggatgctg ggcaccggga gcaggcctat
     1141 cactggtatc gcaaggcttt tgatgtagag cccagcctcc actcgggcat caatgcagct
     1201 gtgcttctca ttgccgctgg gcagcgcttt gaggactcca aggagctccg gctcataggc
     1261 atgaagctgg gctgcctgct ggcccgaaaa ggctgtgtgg agaagatgca gtattactgg
     1321 gatgttggct tctacctggg agctcagatc cttgtcaatg acctcacgca ggtggcactg
     1381 gctgcagagc agctgtacaa gctcaatgcc cccatatggt acctggtgtc tgtgatggaa
     1441 accttcctgc tgtaccagca cttcagaccc acactagagc ctcctggaga aaccccacac
     1501 cacgcccact tctggctcca ctttttgcta cagtcctgcc agccactcaa gatgacttct
     1561 ccccaagggg agcagtgctt ggtgctggtc ctggagatga ataaggtgct tctaccggcc
     1621 aggctggagg ctcatggtac caacccggtg agcacagtga cggtgagcct gctggagccc
     1681 ggtaagcagg tgatatcgcc ggacgttccc tccagctgga ccttcccggt ggcctccatc
     1741 agcggtgtca gcgtgtcgaa tcgagacgag cgctgctgct tcctctacgc gcttcccccg
     1801 gctcaggacg tccagctgtg cttccccagc ggagggcact gccagtggtt ctgcgggctg
     1861 atccaggcct tggtgaagaa tccggactcc acggcggccg cagaggaggc ggagggcgga
     1921 ggggaggtat tggagtttga ttatgagtac acggagtcgg gagagcggct ggtgctgggc
     1981 aagggcacct acggggtggt gtacgccggc cgtgatcggc gcacgcgggt gcgcatcgcc
     2041 atcaaggaga tcccggagcg ggacagcagg ttctctcagc cactgcatga agagatcgct
     2101 ctgcacaaac gcctgcgcca caagaacatc gtgcgctatc tgggctcagc cagtcagggc
     2161 ggctacctca agatcttcat ggaggaagtg cctggaggca gcctgtcctc cttgctgcgg
     2221 tcagtgtggg gacccctgca ggacaacgag agcaccatca gtttctacat ccgccagatc
     2281 ctgcagggac tcagctacct gcacgacaac tgcatcgtgc atcgagatat caagggggac
     2341 aatgtactga tcaacacctt cagcgggctg ctcaagattt ccgacttcgg tacctccaag
     2401 cgactagccg gcatcacacc ctgcactgag accttcgcag ggaccctaca gtatatggcc
     2461 ccagaaatca ttgaccaggg cccacgaggg tatgggaagg cggcggacat ctggtcattg
     2521 ggctgcactg ttatcgagat ggccacaggt cgcccaccct tccacgagct ggggagcccg
     2581 caggctgcca tgtttcaggt gggcatgtac aaggtgcacc caccaatgcc cagttctctg
     2641 tcagccgagg ctcaagcctt cctcctccga acttttgagc cagatccacg cctccgagcc
     2701 agtgcccaag cactgctgga ggaccccttc ctgcaacctg ggaagaggag ccgcaacccc
     2761 ggctcccccc agtatgctct aaggtcctca gacgcccctt ccgccagccc cactccttta
     2821 gctgacttga cctcccagtc ccagacattc ccgcggcctc aggcaccctc tcagcaccct
     2881 cccagtcccc ccaagcgctg gctcagttat ggggacacca gccagctccg ggtgcctgag
     2941 gagcctgggg ccgaggagcc cgcgtcccct gaggagagct cggggctgag cctcctgcac
     3001 caagagagca agcgccgggc catgttggca acggtactgg agcaggagct acaggccctg
     3061 gcagagagtc tgtgcctgga gcaggaacag ggttcccatc tggggaggaa tcatgtggaa
     3121 cagctactgc gctgcctcag ggcgcacatc cacactccca accgccggca gctggcccag
     3181 gagctgcagg agctgcaagg gcagcttcgg gcccagggcc ttgggcccga gattctgcaa
     3241 ggaccgctct tcgccttccc ggatgcggtg aagcagatcc tccacaggcg ccagatccgc
     3301 ccacactgga tgttcgtgct ggactcgctg ctcagccgcg ctgtgctggc agccctggct
     3361 gttctggccc caggctgaca ctgcctagcc cgtgcccaga gccccgcgtc ctctgccgat
     3421 gtctggggtc ctaaatgggc attctcgccc tgcctgagtt t
//
LOCUS       XM_032611793            4327 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TLC domain-containing protein 4-like
            (LOC116743418), mRNA.
ACCESSION   XM_032611793
VERSION     XM_032611793.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                VOSU01000011.1     84906555-84906621
            68-233              VOSU01000011.1     84930497-84930662
            234-323             VOSU01000011.1     84934828-84934917
            324-382             VOSU01000011.1     84936665-84936723
            383-477             VOSU01000011.1     84938918-84939012
            478-525             VOSU01000011.1     84954009-84954056
            526-551             VOSU01000011.1     84954058-84954083
            552-4327            VOSU01000011.1     84968809-84972584
FEATURES             Location/Qualifiers
     source          1..4327
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4327
                     /gene="LOC116743418"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 long SRA read, 7 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743418"
     CDS             79..870
                     /gene="LOC116743418"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: TLC domain-containing
                     protein 4-like"
                     /protein_id="XP_032467684.1"
                     /db_xref="GeneID:116743418"
                     /translation="MDTNTILVISAGFTSFFTFQLLFHFVSYWFSAKVSPGFNNLNFE
                     KKIEWNSRVVSTCHSLVVGVIGLYIFLFDEATIADPLWGDPSLVKVNIAIASGYLISD
                     LLILIWYWKVIGDKYFIIHHCTALYAYYFVLRDGVLGYIGNFRLLAELSSPFVNQRWF
                     FEALKYPKFSKANVINGILMTVVFFIVRIASIPPFYGYIYSVLGTEAYLRLGFLIQCS
                     WISTCVVLDVMNVMWMIKISKGCIKVISLIRQEKAKKSLQNGKLD"
     misc_feature    211..816
                     /gene="LOC116743418"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 ggtgctttgg gcatccaagg aaagctttct tgttagaggc ccgtacagga tcaggtgcat
       61 caagtgggtt gaagaaatat ggataccaac accatattgg tcatcagcgc tggttttacc
      121 agctttttca cctttcagct tcttttccac tttgtaagtt attggttttc agcaaaagtt
      181 tctccaggtt ttaataatct caacttcgaa aagaagattg aatggaactc aagggtagtg
      241 tctacgtgtc attctttggt ggttggggtt attggcttgt acatattctt gtttgatgag
      301 gctactattg ctgatccact ttggggtgat ccatctcttg tgaaagtgaa tattgctatt
      361 gcttcaggct acctcatttc tgatttgttg attctcattt ggtattggaa agtgattggt
      421 gacaagtatt ttataattca ccactgtaca gcgctgtatg catactactt tgtactgagg
      481 gatggagtgc tgggatacat tgggaatttt cgcctgcttg cagaactttc cagccctttt
      541 gtgaatcagc ggtggttctt tgaggctctg aagtatccta agttttccaa ggctaatgtc
      601 atcaatggaa tactcatgac tgtggtcttc ttcatagtgc ggattgcctc aatacctcct
      661 ttttatggct acatttactc tgtgttagga acggaagcct acctgaggct tggattttta
      721 attcagtgtt cctggatctc tacttgtgtt gttttggatg taatgaatgt catgtggatg
      781 atcaaaattt caaaggggtg catcaaagtc atctctctca taagacaaga gaaagccaaa
      841 aagagtcttc agaatggaaa acttgactaa aagtgggcta ttgacaagca tacttcatga
      901 ttacccacat tatatcttct gataggttga attcttggca tgttcttgtg cttctttatt
      961 aattatactt gttattctcg gtttcaatgt cctttttttc ctaaccgtta gaaaagagaa
     1021 actaaaattt agtttttatc tgaagattta ttttctgata ttcttcggca ttataagcat
     1081 ggataaaatc ttaaaggttt aaataaaaat gtataaatat ggtggtgaat ctttttagaa
     1141 acctgttaac cagcattggt atttttctct gtgaaaacat gactatgcta atttggtgca
     1201 cttggtttta tgtcaccgat tttgctgaaa gaatgggaac tgcttttaaa tctgtagata
     1261 gctctccaca ttttgttgta ttgcactcat ttcttactat ggctgtcaat acctgtgtag
     1321 tgtttaattt ccaaattgtt gaaatgtcct ttttcttagg ctattagaag tgatgtcttt
     1381 ttcatttaga tatgctgtca tctactaata atgaagtatt ttgcttattt ggggaacctt
     1441 tagttaaatt atggaaaata tttcttgcgt tttcagactt ttctgacatc actttattat
     1501 ttctactttt aacatttttt caaattattg cttttttctt ttgtagtaaa gcttaagacc
     1561 aatctaatag agctccataa gagatgaatt cttccttcta aaacatgcat gttttagatg
     1621 actatttggg ctaataggaa gaatcattaa gaaagaagct ttaacactgc tgtctctatc
     1681 tgcgtccctt gcactttttc tatgaaaaat atattatttc tatttgcaaa acctcccctg
     1741 agttcagaac ccaacatcat tagcaccaaa atcttatgca gtatgtattt agcatgctcc
     1801 taaggtaggc ctcttcttga tgagaccaag actacaaaaa aaaaatcggt attcatattt
     1861 tactcacaat ttacacccat gcttttgctt aaccagcact ttgagtgctt tgaatttgtg
     1921 tctttcctaa aggataggaa aacaatagat aatttaatcc aagcattctg attatcaata
     1981 ttattgcttt atctgaggat aaatgactgg tgacttattt tttctgtttg tgtgtgtggg
     2041 tatgtttgtg tttgctttgg tccttacaac ccaaatatag aattatacag ttagctatta
     2101 ttgcctttat ttatttttct caagtacttt aatgatcatt cttacctaag gaaaaaaatt
     2161 aatcagcggt aaatactaga atttagttga acccaaacca gaagatctaa ttcattcggt
     2221 ttctcaggtt gaaggagaat gtgtgactta catgttatga ggatgaaggg aggctagctg
     2281 gatatttcag gacttctgat ttgatgtgat ttgattgatt tggctgtccc atgcagatgg
     2341 ggcctgatac attgtagaac attggaagaa ggtaattgag atctcggtca gtaactaaat
     2401 gaaaaattga aattgattgg cttataccag gtacacttat ttttgaaaga cttaattaaa
     2461 gtaatataaa atataggtat ttgtttttaa atctgctaat attacattga taatttgtta
     2521 ctaaattgag tgccttctac acataggcac ttaaacatgt attggttgtt tagcaggggt
     2581 aggaaggcac gtggttttat cttgttcttt tcttgctctt ttgcgagaaa aatggctttt
     2641 taaaaggaaa acatttatat tagaaaacta ttttggaaat tcattccttt aggaagaaac
     2701 aaaacttgaa ataaatattt ttgactttgg atatttctgt agcttctgaa cacagatttt
     2761 aaacccacca tcaaaaggaa gacaatatag ggcttccctg gtggtgcagt ggttgagagt
     2821 ccgcctgccg atgcagggga tacgggttct gtgcccggtc caggaagatc ccacatgccg
     2881 tggagcggct gggcccgtga gccatggccg ctgagcctgt gcgtccggag cctgtgctcc
     2941 gcaacgggag aggccacaac agtgagaggc ctgcatacca taaaaaaaaa aaaaaaagga
     3001 agacaatata aagctatata ttagtgagtt tcaatatagc aatttccatt tttatagtta
     3061 tttcatgctt aaaacttcat ttttactttc accaacagca cctttctgca gtataacccc
     3121 tcactaagta agtgtaatta aaatatccat gtgttgaact aaagtttgtt attcccttag
     3181 tcagcaattc ttattttatg ctggctgcac gatagttaat ttagtatcca gattcaatat
     3241 ccaaaagtag attctatgca tttcctcata aaacagacat gaaatgaaaa agacactgca
     3301 agctgccatg ctacttgaag tcagatcttt acaggagcta tactttgctg ttctgtgatt
     3361 gtatccacct acgtaagata caagtagcta aagacagaac atttcatttg ttaaatgatg
     3421 aatttttcat ttattaaatg acaaactttt gctagacatt ttacgtatta aacattttga
     3481 ctacatggat taatttaaat gattctatta ggcattctga tatttaacaa cttaaaatat
     3541 ttatagaaaa tgaaagcaaa ttggtataaa tttttaagca actctatttt tgtagaaaaa
     3601 gattagtgac aacctgtacc tataaagatg ttctctgaac gtgtagtact ctagaaaaaa
     3661 aaattcttac aaaattttga aaatgaatga aaatcaacta aataacatgc aagatcatag
     3721 actgcattag atattttatt tgggagaatt tagaaattat gagctttata gcgtctgcat
     3781 tatcgtgcct aaaatctttt tactgaatat tatttgcatt tatttaaaac aatatggagt
     3841 tatatgtgaa tgcaaagaaa tgaactcctt aaattgtctt gatacatcat agtaagttga
     3901 aatgtagtaa tttttattcc aactgttcgt tttggtattt catggattag ccgtatgtta
     3961 agagaaataa tgtcttcacc attcctaaga gtgactgata tactgtggat gacccagtac
     4021 tgttgtaaag gactagtttt agaaactacc tagtttatag ctgtttgaat caaattcttt
     4081 tctaaatttt aataacctat ttgactcaaa tcaaaatttt gctaaaagta tcagttttta
     4141 aattgtatgc tttctctgag atgcattggg catttggaga atggttcttc cctttactgt
     4201 tggttacacc agttgtcatc atgtatttag aaatattctt ctcatggaga tatacagggg
     4261 aaaaatgtgt tgtaatattc atgtttgttc tgcttcattt ttaaggaaaa taacatgttc
     4321 caaaaga
//
LOCUS       XM_032611806            8162 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prospero homeobox 1 (PROX1), transcript
            variant X1, mRNA.
ACCESSION   XM_032611806
VERSION     XM_032611806.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8162
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8162
                     /gene="PROX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 10 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743425"
     CDS             509..2722
                     /gene="PROX1"
                     /codon_start=1
                     /product="prospero homeobox protein 1 isoform X1"
                     /protein_id="XP_032467697.1"
                     /db_xref="GeneID:116743425"
                     /translation="MPDHDSTALLSRQTKRRRVDIGVKRTVGTASAFFAKARATFFSA
                     MNPQGSEQDVEYSVVQHADGEKSNVLRKLLKRANSYEDAMMPFPGATIISQLLKNNMN
                     KNGGTEPSFQASGLSSTGSEVHQEDICSNSSRDSPPECLSPFGRPTMSQFDMDRLCDE
                     HLRAKRARVENIIRGMSHSPSVALRGNENERDMAPQSVSPRESYRENKRKQKLPQQQQ
                     QSFQQLVSARKEQKREERRQLKQQLEDMQKQLRQLQEKFYQIYDSTDSENDEDGNLSE
                     DSMRSEILDARAQDSVGRSDNEMCELDPGQFIDRARALIREQEMAENKPKREGNNKER
                     DHGPNSLQPEGKHLAETLKQELNTAMSQVVDTVVKVFSAKPSRQVPQVFPPLQIPQAR
                     FAVNGENHNFHTANQRLQCFGDVIIPNPLDTFGNVQMPSSTDQTEALPLVVRKNSSDQ
                     SASGPPAGGHHQPLHQSPLSATAGFTTSTFRHPFPLPLMAYPFQSPLGAPSGSFSGKD
                     RASPESLDLTRETTSLRTKMSSHHLSHHPCSPAHPPSTAEGLSLSLIKSECGDLQDMS
                     EISPYSGSAMQEGLSPNHLKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWF
                     SNFREFYYIQMEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEVPERFL
                     EVAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQELLHE"
     misc_feature    <914..1765
                     /gene="PROX1"
                     /note="Chromosome segregation protein NDC80, interacts
                     with SMC proteins [Cell cycle control, cell division,
                     chromosome partitioning]; Region: HEC1; COG5185"
                     /db_xref="CDD:444066"
     misc_feature    2243..2704
                     /gene="PROX1"
                     /note="Homeo-prospero domain; Region: HPD; pfam05044"
                     /db_xref="CDD:461534"
ORIGIN      
        1 tggagcggag ccctcagctg agggagcgct ctgaaataat acaccattgc agccggggaa
       61 agcagagcgg cgcaaaagag ctctcgccgg gtccgcctgc tccctctccg cttcgctcct
      121 cttctctcct ctcctctctc ccctcttcta ctctcttctc ttctcttctc tcttctccta
      181 ttctcctctc tcctcctctc gcctcttctc ttcctcactc tcctctcttc ttgtcttccc
      241 tcctctcctc tccctgccca ccctctcctc tctctcccct cattctcccc gtcggcccgc
      301 tcgcgcgctc ccgcacggac tcaccgtccc ttgtccaatt atcatattca tcacccgcaa
      361 gatctcaccg tgcgtgtgcg cgcgcgtgtt ttcctctctc cgcctgcaaa aaaggctcgg
      421 tcccactgct ctctgcaccg aggtcccagg attcttgagc tgtgcccagc tgacgagctt
      481 ttgaagatgg cacaataact gtccagtgat gcctgaccat gacagcacag ccctcttaag
      541 ccggcaaacc aagaggagaa gagttgacat tggagtgaaa aggacggtag ggacagcatc
      601 tgcatttttt gctaaggcaa gagcaacgtt ttttagtgcc atgaatcccc aaggttccga
      661 gcaggatgtt gagtattcag tggtgcagca tgcagatggg gaaaagtcaa atgtactccg
      721 caagctgctg aagagggcga actcatatga agatgccatg atgccttttc caggagcaac
      781 cataatttcc cagctgttga aaaataacat gaacaaaaat ggtggcacgg agcccagttt
      841 ccaagccagc ggtctctcta gtacaggctc cgaagtacat caggaggata tatgcagcaa
      901 ctcttcaaga gacagccccc cagagtgtct ttcccctttt ggcaggccta ctatgagcca
      961 gtttgatatg gatcgcttat gtgatgagca cctgagagca aaacgcgccc gggttgagaa
     1021 tataatccgg ggtatgagcc attcccccag tgtggcatta cggggcaatg aaaatgaaag
     1081 agatatggcc ccgcagtctg tgagtccccg agaaagttac cgagaaaaca aacgcaagca
     1141 gaagctgccc cagcagcagc aacagagttt ccagcagctg gtttcagccc gcaaagaaca
     1201 gaagcgagag gagcgccgac agctgaaaca gcagctggag gacatgcaga aacagctgcg
     1261 ccagctgcag gaaaagttct accagatcta tgacagcact gattctgaaa atgatgaaga
     1321 tggtaacctg tctgaagaca gcatgcgctc ggagatcctg gatgccaggg cccaggactc
     1381 cgtggggagg tcagacaatg agatgtgcga gctggacccg gggcagttca tcgaccgagc
     1441 ccgggccctg atccgggagc aggaaatggc tgaaaacaag ccgaagcgag aaggcaacaa
     1501 caaagaaaga gaccacgggc caaactcctt acaacccgaa ggcaaacatt tggccgagac
     1561 cttgaaacaa gaactgaaca ctgccatgtc gcaagttgtg gacactgtgg tcaaagtctt
     1621 ctccgccaaa ccctctcgcc aggttcctca ggtctttccg ccgctccaga tcccccaggc
     1681 cagatttgca gtcaacgggg agaaccacaa tttccacacc gccaaccagc gcctgcagtg
     1741 ctttggcgat gtcatcattc cgaaccccct ggacaccttt ggcaatgtgc agatgcccag
     1801 ttccacagac cagacagaag cactgcccct ggtggtccgc aaaaactcat ctgaccagtc
     1861 tgcctccggc ccccctgccg gcggtcacca ccagcccctg caccagtcgc ctctgtcggc
     1921 caccgcaggc tttaccacgt ccaccttccg ccaccccttt cccctcccct tgatggccta
     1981 cccgtttcag agtccattag gtgctccctc cggctccttc tcgggaaaag acagagcctc
     2041 tcctgaatcc ttagacttaa ctagggagac cacgagtctg aggaccaaga tgtcatccca
     2101 ccacctgagc caccatcctt gttcaccagc acatccaccc agcaccgcag aagggctctc
     2161 cttgtctctc atcaaatccg agtgtggcga tcttcaagac atgtccgaaa tctcacctta
     2221 ttcgggaagt gcaatgcagg aaggattgtc acccaatcac ttgaaaaaag caaagctcat
     2281 gttcttttac acccgttatc ccagctccaa catgctgaaa acctacttct ctgatgtaaa
     2341 gttcaacaga tgcattacct ctcagctcat caagtggttt agcaatttcc gtgagtttta
     2401 ctacattcag atggagaagt acgcgcgtca agccatcaac gatggggtca ccagtaccga
     2461 agagctgtct ataaccagag actgtgagct gtacagggct ctgaacatgc actacaataa
     2521 agcaaatgac tttgaggttc cagagagatt cctggaagtt gcgcagatca cattacggga
     2581 gtttttcaat gccattatcg caggcaaaga tgttgatcct tcctggaaga aggctatata
     2641 caaggtcatc tgcaagctgg atagtgaagt ccctgagatt ttcaaatccc caaactgcct
     2701 acaagagctg cttcatgagt agaaatttca acaactcttt tcgaatgtat gaatagtagc
     2761 agtccccttt ggatgtccaa gttatccgtg tctagatttt gatttcatat atatgtgtat
     2821 gggaggcatg gatgtgttac aaaatcagct ggtaatccct cctcatcatc tttctctcat
     2881 tttcttctgt tttccattgc aaggggatgg ttcttttcct tccgccttta gtttactttt
     2941 gcccaaggcc cttaacattt ggagacttaa aatagggtta attttcaggg aaaaagaatg
     3001 ttgacgtgtg taaagtctat attagcaagg aagggcattt ttaaaagatg cttctgctgg
     3061 gttgatggct tattgcgcac ggcggttggc agagggagac ccgtgacaca gcactactct
     3121 gtagtcagtg atgtgtctct tgtttttact gctgagaagg tcagaaaact caatgaaacc
     3181 acttgataaa cttaaatatt ttgtttggtt tgaactcagt aagtcgcttt ttatcacaca
     3241 tttaaaaata atgccagtgg tagatgaaca actcactttt cacaagtacc ccaaaaggtc
     3301 aaattttaaa aagaaacata atcactaacc gtcaagtctt tcctaagaga aatggcaaat
     3361 gccacaagct agtaccattt tctttggagg caaagcagtt ttgtacaaaa ctgactcttt
     3421 caaaatgaga ctggaaattc atgtgatttc tagtcacctc tcgaaatttt gcaataggtt
     3481 cttcttggta ataagtatct atcgtttttc atacagaaaa acccctataa cgtgttatca
     3541 ttttctattt atcttgcttc agatactaaa aggcacataa gtttcaaatt tattctttgc
     3601 tcaactttgt ttatgtggtc taaaagaatt atcatttctg tttaatattt aacacttctt
     3661 ttttcaaaaa acactatttt ctgaattcct ttctatggta aggaataaag gacatcccaa
     3721 cttgaccata agattcctgc ctacactaga agtttgttaa cagctgctag ctgacgcgat
     3781 cttcccctcc tgagaggagt acatatgaga atgacctatt ttcctataca tttccactct
     3841 accctgatgg atattcaaag tggtgacggt ctaattttta agtgtttctt cattttaggt
     3901 acagtgtttt aaagaaatgg atacagtctc ttctaattca gaagctagta atcgaccaaa
     3961 acgtgaagag tgtatagaat aggagagttt gggagttaac ccaaaagata caatttcagc
     4021 acacataaga aagctagctg ctatttcatg ctttcttcaa tggttctcct cttttttctt
     4081 tttctttttt ttttttcttc cagtttttca aaggtgtcca aagtcccgta cttgctttta
     4141 aaaagccgta tggcattcac acttgttttc tcagatgggt tttgtgtgca gatgcagtaa
     4201 gaattccttt tttattctaa tagtgttttc cagaaccctc cctccccttt agtaacttga
     4261 tctacatctc ctaaagtgac aaagtaaaaa aaaaaaaaaa aaaaaaaacc tggtatttag
     4321 atcgtataca acataaatat cgttttttcc ttgattttta taaaaattac atttgacttt
     4381 ggagactgca ggttgaccta tgtaactagg tgacccaatc gctgtcattt aacatcattt
     4441 ataaattctg ctgatggaca ggaatgtacg aaggcaatta ttgtcagcac aaagccttaa
     4501 aacctgctga ctttaagtta aacggcgcgg tcctatgatg cctgcgtcat tcaggagacg
     4561 tggcctcttg cggtgtggac agagtgcagt ggcccgggct ggaacaccct gggcctcact
     4621 ctgcacccac agccaaacac atcgcccagc tcgcaggctc ctacacagag ccatgagagc
     4681 caatttgttc ttgttccggc ttgtttggaa aaaaaaagtg tttggataat catcacattg
     4741 gaataaaatg aaaacccccc caaaaaggaa aaatccaatc agcacaaagt agggaagcaa
     4801 tctcaacttg tggtcacact ctttcgcctt gcttcacgcc caagagtatg acattcattg
     4861 ttcacatcag cacagaactg ggtctttgct gttcccgtgt aattcacatc accattgtgt
     4921 tgccattcgc aagggtaaaa ggcaaaaacc gtaatgtctt cacctataaa gatagattgc
     4981 tagtatcttc ctgatctggg gcaaattcag tattgattcc tgacgtatta gaatttttag
     5041 tattattctc ccctgccttt ctaattgaaa tagacaaatt aagcaaaaac gtgtgttcac
     5101 aaccaaatgt tgatgcactt gtctacaata atatcctctc aatgttcact gaggcataga
     5161 aattgtttca gagtagaaat tgcagcatga ggagaaactc acctcattgt cctggaaaca
     5221 gaactcaatc attttgcttt taggtgattc ttttctcttt caccatcata aaatcttgtg
     5281 cctcccagtg cattggaaaa tgacaaaagc ctatctctca aaactcctat ttaacaagtt
     5341 ttctttaaaa caccatcttt ccaatcttag ctcaactctc accaagtaaa aattggcgac
     5401 ttgggagaaa gttcactttc tctggtggga gggtgaagga ctagggacag tttacacagg
     5461 gaaacaaagt ctaaagtcca tgctgaaata ccacatttcc acttattttc tgctaaccct
     5521 aaattatttt tgcatctaca cttgaggtta tagtctgtgc ctagacctaa acgcaccagc
     5581 ggggggattt taaaaaatcc ttcaaaattc cagttttttc ccacaagtac agttgttctc
     5641 gtgccttctg tggctttcga tttcatcttt ttgactttat ttccaattac tacagctgca
     5701 ataaacacta gatttttttt ctggctgttt gacataacgt tgatagctat gcatattttg
     5761 tgtcttttta aaacaaagca ggagaatacg tttttgaaga agagaatttt tagaacagtt
     5821 tgataccgca aattattttt tcctcaatcg tttgagcagc attcgagttt tgaaaattct
     5881 tgtagaagcc aattttttgt aactgtggtg caaatcttgt gttttcttag cctaatgaaa
     5941 agtagtatag aagcaatatt tcataccatg tgctatatat gtgtgtgcag atgtgtgaac
     6001 ataaaaacac atacacacat atacacacat gtaaaaatat acatatatat atgcgtgtga
     6061 agtggaaagc ttaccttttc ctatctagat ttaaggacct attttaggca ttcgttatgt
     6121 tttgtgaaaa gaatgttcta tttgcaacaa caaaacattt aattcttact gtatctctgg
     6181 ctgtttaatg aggacatttc actttaaatg gtaaaacaac gtggaagatg gtagaatgta
     6241 gtaattattt aaggaaatgt tcacccacat attcctgaag tttgctttgt gcctccaagt
     6301 attatttcat taaagtgttt tatgtttgca gaatctttgt tgctgtgcta gggatgtggg
     6361 tgaatatcat tttaaaaaat tttaaaaaca acaaaaaaaa gcaaaacaaa aacactaaag
     6421 caagagggga acttttataa agcaatgtaa atatttaacc tcatggctgt tgttacgtaa
     6481 gacatgagat tttaataaat aactacattc tcacaacatc tgttgaattt attaggaaca
     6541 cttcagtgac tgtatagaca gttgaaagca ttcttgaaaa tcctgctctc tacttttaaa
     6601 agataacagt ctctttcatc agatgtcaag ggcaagggta atgcagtttc tgtaaattta
     6661 tgaaatttct tttctatgta catgaagaca tttagtacgt aacctccctc ccccctcaca
     6721 cacacacata catgcataca catacaggtt aatattaagt cataaagcga aagatctggg
     6781 ggctttaaaa ataagatgtc ccccagaagc aatcataaat tcatcaaaga aaaagtggtt
     6841 tacagactcc cctgaaagaa gcagtgtaca tgtgaggaca gagcagaatc tctttgccat
     6901 gtatattata gaatcttcat tggtgtgaat agtacaaatg tttcgttctg gtacaaactc
     6961 tgtgtttgca aattacaaga agcattgttt tcaaaaagct ccccttaaaa gaacgtaact
     7021 ggtttctgtg agtaaagcag ttactgtatt gcacttacat gtgatgttga aggaaatgca
     7081 gttttgtttt ctgtagatct gttggttgta aaccatccgt aagactaaag ctaaaatgct
     7141 catattcaga gctgggatca aaactggtat ttaacctttg catcttctta taatcatcct
     7201 tctaagaata taatggaatc tggaagcatc tggactttga gtcttttcaa ctgagccctc
     7261 tctcaaacct gacaccctga aaatgcacag acatgaacag aaaaggcaaa cagactggct
     7321 cgcttttgtg aaaatggctt cattctttat ttttaaaata ttcaaatatt ctccataggt
     7381 gggaaaagca gtttaaaatt gtatattacc acttcaaaat tagaattaga aaagcaaatg
     7441 tatttggggt tggtctcagc aatacccaga aaaatcaaag gtcctggctt cccccaatat
     7501 tgtcccagcc atttctcata tgtatatagt ataaaccgtg acaaaacact gcctttatat
     7561 tatttagcaa tatgttgtaa atagcattat taagctcttt tttttgtaat aaagaccctt
     7621 tgatctgaat atagtacaat aactgaactg ataaagtcaa tttttgattt tttttttagc
     7681 tagaggcaat ttcaattgtg gatttttgtt gttgtctatt gttctgaaga ctttgcataa
     7741 tttattggtt taatttatcc taatttattt gatgaaggtg tacaattttg tattaccaag
     7801 gatgtactgt aatattaatt gatatgagaa aaaaacaatg agactccctg tgtccatatt
     7861 aaaaagtaaa taaaaaggtg cagtagacaa ttgattttaa agtaaaagta aaaagtttag
     7921 tttggcagct actaaatttt aaaacaggaa aaaaaaatag ttgtgggggg aagggtggga
     7981 agggggtttt actttgtgtg tttaagcttt tgtatactct ccaaactttt accttttgct
     8041 ttgtaccact taaaggatac agtagtccaa ttgccttgtg tgccttccat cttctcttaa
     8101 actgaatgta tgtgcagtat atatgcaagc ttgtgcaaaa taaaatatac attacaagct
     8161 ca
//
LOCUS       XM_032611814            7759 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prospero homeobox 1 (PROX1), transcript
            variant X2, mRNA.
ACCESSION   XM_032611814
VERSION     XM_032611814.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7759
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7759
                     /gene="PROX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 10 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743425"
     CDS             106..2319
                     /gene="PROX1"
                     /codon_start=1
                     /product="prospero homeobox protein 1 isoform X1"
                     /protein_id="XP_032467705.1"
                     /db_xref="GeneID:116743425"
                     /translation="MPDHDSTALLSRQTKRRRVDIGVKRTVGTASAFFAKARATFFSA
                     MNPQGSEQDVEYSVVQHADGEKSNVLRKLLKRANSYEDAMMPFPGATIISQLLKNNMN
                     KNGGTEPSFQASGLSSTGSEVHQEDICSNSSRDSPPECLSPFGRPTMSQFDMDRLCDE
                     HLRAKRARVENIIRGMSHSPSVALRGNENERDMAPQSVSPRESYRENKRKQKLPQQQQ
                     QSFQQLVSARKEQKREERRQLKQQLEDMQKQLRQLQEKFYQIYDSTDSENDEDGNLSE
                     DSMRSEILDARAQDSVGRSDNEMCELDPGQFIDRARALIREQEMAENKPKREGNNKER
                     DHGPNSLQPEGKHLAETLKQELNTAMSQVVDTVVKVFSAKPSRQVPQVFPPLQIPQAR
                     FAVNGENHNFHTANQRLQCFGDVIIPNPLDTFGNVQMPSSTDQTEALPLVVRKNSSDQ
                     SASGPPAGGHHQPLHQSPLSATAGFTTSTFRHPFPLPLMAYPFQSPLGAPSGSFSGKD
                     RASPESLDLTRETTSLRTKMSSHHLSHHPCSPAHPPSTAEGLSLSLIKSECGDLQDMS
                     EISPYSGSAMQEGLSPNHLKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWF
                     SNFREFYYIQMEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEVPERFL
                     EVAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQELLHE"
     misc_feature    <511..1362
                     /gene="PROX1"
                     /note="Chromosome segregation protein NDC80, interacts
                     with SMC proteins [Cell cycle control, cell division,
                     chromosome partitioning]; Region: HEC1; COG5185"
                     /db_xref="CDD:444066"
     misc_feature    1840..2301
                     /gene="PROX1"
                     /note="Homeo-prospero domain; Region: HPD; pfam05044"
                     /db_xref="CDD:461534"
ORIGIN      
        1 attaaagaga aaatgatttg cacccaaaaa gacaagaggg tcccaggatt cttgagctgt
       61 gcccagctga cgagcttttg aagatggcac aataactgtc cagtgatgcc tgaccatgac
      121 agcacagccc tcttaagccg gcaaaccaag aggagaagag ttgacattgg agtgaaaagg
      181 acggtaggga cagcatctgc attttttgct aaggcaagag caacgttttt tagtgccatg
      241 aatccccaag gttccgagca ggatgttgag tattcagtgg tgcagcatgc agatggggaa
      301 aagtcaaatg tactccgcaa gctgctgaag agggcgaact catatgaaga tgccatgatg
      361 ccttttccag gagcaaccat aatttcccag ctgttgaaaa ataacatgaa caaaaatggt
      421 ggcacggagc ccagtttcca agccagcggt ctctctagta caggctccga agtacatcag
      481 gaggatatat gcagcaactc ttcaagagac agccccccag agtgtctttc cccttttggc
      541 aggcctacta tgagccagtt tgatatggat cgcttatgtg atgagcacct gagagcaaaa
      601 cgcgcccggg ttgagaatat aatccggggt atgagccatt cccccagtgt ggcattacgg
      661 ggcaatgaaa atgaaagaga tatggccccg cagtctgtga gtccccgaga aagttaccga
      721 gaaaacaaac gcaagcagaa gctgccccag cagcagcaac agagtttcca gcagctggtt
      781 tcagcccgca aagaacagaa gcgagaggag cgccgacagc tgaaacagca gctggaggac
      841 atgcagaaac agctgcgcca gctgcaggaa aagttctacc agatctatga cagcactgat
      901 tctgaaaatg atgaagatgg taacctgtct gaagacagca tgcgctcgga gatcctggat
      961 gccagggccc aggactccgt ggggaggtca gacaatgaga tgtgcgagct ggacccgggg
     1021 cagttcatcg accgagcccg ggccctgatc cgggagcagg aaatggctga aaacaagccg
     1081 aagcgagaag gcaacaacaa agaaagagac cacgggccaa actccttaca acccgaaggc
     1141 aaacatttgg ccgagacctt gaaacaagaa ctgaacactg ccatgtcgca agttgtggac
     1201 actgtggtca aagtcttctc cgccaaaccc tctcgccagg ttcctcaggt ctttccgccg
     1261 ctccagatcc cccaggccag atttgcagtc aacggggaga accacaattt ccacaccgcc
     1321 aaccagcgcc tgcagtgctt tggcgatgtc atcattccga accccctgga cacctttggc
     1381 aatgtgcaga tgcccagttc cacagaccag acagaagcac tgcccctggt ggtccgcaaa
     1441 aactcatctg accagtctgc ctccggcccc cctgccggcg gtcaccacca gcccctgcac
     1501 cagtcgcctc tgtcggccac cgcaggcttt accacgtcca ccttccgcca cccctttccc
     1561 ctccccttga tggcctaccc gtttcagagt ccattaggtg ctccctccgg ctccttctcg
     1621 ggaaaagaca gagcctctcc tgaatcctta gacttaacta gggagaccac gagtctgagg
     1681 accaagatgt catcccacca cctgagccac catccttgtt caccagcaca tccacccagc
     1741 accgcagaag ggctctcctt gtctctcatc aaatccgagt gtggcgatct tcaagacatg
     1801 tccgaaatct caccttattc gggaagtgca atgcaggaag gattgtcacc caatcacttg
     1861 aaaaaagcaa agctcatgtt cttttacacc cgttatccca gctccaacat gctgaaaacc
     1921 tacttctctg atgtaaagtt caacagatgc attacctctc agctcatcaa gtggtttagc
     1981 aatttccgtg agttttacta cattcagatg gagaagtacg cgcgtcaagc catcaacgat
     2041 ggggtcacca gtaccgaaga gctgtctata accagagact gtgagctgta cagggctctg
     2101 aacatgcact acaataaagc aaatgacttt gaggttccag agagattcct ggaagttgcg
     2161 cagatcacat tacgggagtt tttcaatgcc attatcgcag gcaaagatgt tgatccttcc
     2221 tggaagaagg ctatatacaa ggtcatctgc aagctggata gtgaagtccc tgagattttc
     2281 aaatccccaa actgcctaca agagctgctt catgagtaga aatttcaaca actcttttcg
     2341 aatgtatgaa tagtagcagt cccctttgga tgtccaagtt atccgtgtct agattttgat
     2401 ttcatatata tgtgtatggg aggcatggat gtgttacaaa atcagctggt aatccctcct
     2461 catcatcttt ctctcatttt cttctgtttt ccattgcaag gggatggttc ttttccttcc
     2521 gcctttagtt tacttttgcc caaggccctt aacatttgga gacttaaaat agggttaatt
     2581 ttcagggaaa aagaatgttg acgtgtgtaa agtctatatt agcaaggaag ggcattttta
     2641 aaagatgctt ctgctgggtt gatggcttat tgcgcacggc ggttggcaga gggagacccg
     2701 tgacacagca ctactctgta gtcagtgatg tgtctcttgt ttttactgct gagaaggtca
     2761 gaaaactcaa tgaaaccact tgataaactt aaatattttg tttggtttga actcagtaag
     2821 tcgcttttta tcacacattt aaaaataatg ccagtggtag atgaacaact cacttttcac
     2881 aagtacccca aaaggtcaaa ttttaaaaag aaacataatc actaaccgtc aagtctttcc
     2941 taagagaaat ggcaaatgcc acaagctagt accattttct ttggaggcaa agcagttttg
     3001 tacaaaactg actctttcaa aatgagactg gaaattcatg tgatttctag tcacctctcg
     3061 aaattttgca ataggttctt cttggtaata agtatctatc gtttttcata cagaaaaacc
     3121 cctataacgt gttatcattt tctatttatc ttgcttcaga tactaaaagg cacataagtt
     3181 tcaaatttat tctttgctca actttgttta tgtggtctaa aagaattatc atttctgttt
     3241 aatatttaac acttcttttt tcaaaaaaca ctattttctg aattcctttc tatggtaagg
     3301 aataaaggac atcccaactt gaccataaga ttcctgccta cactagaagt ttgttaacag
     3361 ctgctagctg acgcgatctt cccctcctga gaggagtaca tatgagaatg acctattttc
     3421 ctatacattt ccactctacc ctgatggata ttcaaagtgg tgacggtcta atttttaagt
     3481 gtttcttcat tttaggtaca gtgttttaaa gaaatggata cagtctcttc taattcagaa
     3541 gctagtaatc gaccaaaacg tgaagagtgt atagaatagg agagtttggg agttaaccca
     3601 aaagatacaa tttcagcaca cataagaaag ctagctgcta tttcatgctt tcttcaatgg
     3661 ttctcctctt ttttcttttt cttttttttt tttcttccag tttttcaaag gtgtccaaag
     3721 tcccgtactt gcttttaaaa agccgtatgg cattcacact tgttttctca gatgggtttt
     3781 gtgtgcagat gcagtaagaa ttcctttttt attctaatag tgttttccag aaccctccct
     3841 cccctttagt aacttgatct acatctccta aagtgacaaa gtaaaaaaaa aaaaaaaaaa
     3901 aaaaacctgg tatttagatc gtatacaaca taaatatcgt tttttccttg atttttataa
     3961 aaattacatt tgactttgga gactgcaggt tgacctatgt aactaggtga cccaatcgct
     4021 gtcatttaac atcatttata aattctgctg atggacagga atgtacgaag gcaattattg
     4081 tcagcacaaa gccttaaaac ctgctgactt taagttaaac ggcgcggtcc tatgatgcct
     4141 gcgtcattca ggagacgtgg cctcttgcgg tgtggacaga gtgcagtggc ccgggctgga
     4201 acaccctggg cctcactctg cacccacagc caaacacatc gcccagctcg caggctccta
     4261 cacagagcca tgagagccaa tttgttcttg ttccggcttg tttggaaaaa aaaagtgttt
     4321 ggataatcat cacattggaa taaaatgaaa acccccccaa aaaggaaaaa tccaatcagc
     4381 acaaagtagg gaagcaatct caacttgtgg tcacactctt tcgccttgct tcacgcccaa
     4441 gagtatgaca ttcattgttc acatcagcac agaactgggt ctttgctgtt cccgtgtaat
     4501 tcacatcacc attgtgttgc cattcgcaag ggtaaaaggc aaaaaccgta atgtcttcac
     4561 ctataaagat agattgctag tatcttcctg atctggggca aattcagtat tgattcctga
     4621 cgtattagaa tttttagtat tattctcccc tgcctttcta attgaaatag acaaattaag
     4681 caaaaacgtg tgttcacaac caaatgttga tgcacttgtc tacaataata tcctctcaat
     4741 gttcactgag gcatagaaat tgtttcagag tagaaattgc agcatgagga gaaactcacc
     4801 tcattgtcct ggaaacagaa ctcaatcatt ttgcttttag gtgattcttt tctctttcac
     4861 catcataaaa tcttgtgcct cccagtgcat tggaaaatga caaaagccta tctctcaaaa
     4921 ctcctattta acaagttttc tttaaaacac catctttcca atcttagctc aactctcacc
     4981 aagtaaaaat tggcgacttg ggagaaagtt cactttctct ggtgggaggg tgaaggacta
     5041 gggacagttt acacagggaa acaaagtcta aagtccatgc tgaaatacca catttccact
     5101 tattttctgc taaccctaaa ttatttttgc atctacactt gaggttatag tctgtgccta
     5161 gacctaaacg caccagcggg gggattttaa aaaatccttc aaaattccag ttttttccca
     5221 caagtacagt tgttctcgtg ccttctgtgg ctttcgattt catctttttg actttatttc
     5281 caattactac agctgcaata aacactagat tttttttctg gctgtttgac ataacgttga
     5341 tagctatgca tattttgtgt ctttttaaaa caaagcagga gaatacgttt ttgaagaaga
     5401 gaatttttag aacagtttga taccgcaaat tattttttcc tcaatcgttt gagcagcatt
     5461 cgagttttga aaattcttgt agaagccaat tttttgtaac tgtggtgcaa atcttgtgtt
     5521 ttcttagcct aatgaaaagt agtatagaag caatatttca taccatgtgc tatatatgtg
     5581 tgtgcagatg tgtgaacata aaaacacata cacacatata cacacatgta aaaatataca
     5641 tatatatatg cgtgtgaagt ggaaagctta ccttttccta tctagattta aggacctatt
     5701 ttaggcattc gttatgtttt gtgaaaagaa tgttctattt gcaacaacaa aacatttaat
     5761 tcttactgta tctctggctg tttaatgagg acatttcact ttaaatggta aaacaacgtg
     5821 gaagatggta gaatgtagta attatttaag gaaatgttca cccacatatt cctgaagttt
     5881 gctttgtgcc tccaagtatt atttcattaa agtgttttat gtttgcagaa tctttgttgc
     5941 tgtgctaggg atgtgggtga atatcatttt aaaaaatttt aaaaacaaca aaaaaaagca
     6001 aaacaaaaac actaaagcaa gaggggaact tttataaagc aatgtaaata tttaacctca
     6061 tggctgttgt tacgtaagac atgagatttt aataaataac tacattctca caacatctgt
     6121 tgaatttatt aggaacactt cagtgactgt atagacagtt gaaagcattc ttgaaaatcc
     6181 tgctctctac ttttaaaaga taacagtctc tttcatcaga tgtcaagggc aagggtaatg
     6241 cagtttctgt aaatttatga aatttctttt ctatgtacat gaagacattt agtacgtaac
     6301 ctccctcccc cctcacacac acacatacat gcatacacat acaggttaat attaagtcat
     6361 aaagcgaaag atctgggggc tttaaaaata agatgtcccc cagaagcaat cataaattca
     6421 tcaaagaaaa agtggtttac agactcccct gaaagaagca gtgtacatgt gaggacagag
     6481 cagaatctct ttgccatgta tattatagaa tcttcattgg tgtgaatagt acaaatgttt
     6541 cgttctggta caaactctgt gtttgcaaat tacaagaagc attgttttca aaaagctccc
     6601 cttaaaagaa cgtaactggt ttctgtgagt aaagcagtta ctgtattgca cttacatgtg
     6661 atgttgaagg aaatgcagtt ttgttttctg tagatctgtt ggttgtaaac catccgtaag
     6721 actaaagcta aaatgctcat attcagagct gggatcaaaa ctggtattta acctttgcat
     6781 cttcttataa tcatccttct aagaatataa tggaatctgg aagcatctgg actttgagtc
     6841 ttttcaactg agccctctct caaacctgac accctgaaaa tgcacagaca tgaacagaaa
     6901 aggcaaacag actggctcgc ttttgtgaaa atggcttcat tctttatttt taaaatattc
     6961 aaatattctc cataggtggg aaaagcagtt taaaattgta tattaccact tcaaaattag
     7021 aattagaaaa gcaaatgtat ttggggttgg tctcagcaat acccagaaaa atcaaaggtc
     7081 ctggcttccc ccaatattgt cccagccatt tctcatatgt atatagtata aaccgtgaca
     7141 aaacactgcc tttatattat ttagcaatat gttgtaaata gcattattaa gctctttttt
     7201 ttgtaataaa gaccctttga tctgaatata gtacaataac tgaactgata aagtcaattt
     7261 ttgatttttt ttttagctag aggcaatttc aattgtggat ttttgttgtt gtctattgtt
     7321 ctgaagactt tgcataattt attggtttaa tttatcctaa tttatttgat gaaggtgtac
     7381 aattttgtat taccaaggat gtactgtaat attaattgat atgagaaaaa aacaatgaga
     7441 ctccctgtgt ccatattaaa aagtaaataa aaaggtgcag tagacaattg attttaaagt
     7501 aaaagtaaaa agtttagttt ggcagctact aaattttaaa acaggaaaaa aaaatagttg
     7561 tggggggaag ggtgggaagg gggttttact ttgtgtgttt aagcttttgt atactctcca
     7621 aacttttacc ttttgctttg taccacttaa aggatacagt agtccaattg ccttgtgtgc
     7681 cttccatctt ctcttaaact gaatgtatgt gcagtatata tgcaagcttg tgcaaaataa
     7741 aatatacatt acaagctca
//
LOCUS       XM_032611822            2335 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prospero homeobox 1 (PROX1), transcript
            variant X3, mRNA.
ACCESSION   XM_032611822
VERSION     XM_032611822.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2335
                     /gene="PROX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743425"
     CDS             237..2282
                     /gene="PROX1"
                     /codon_start=1
                     /product="prospero homeobox protein 1 isoform X2"
                     /protein_id="XP_032467713.1"
                     /db_xref="GeneID:116743425"
                     /translation="MPDHDSTALLSRQTKRRRVDIGVKRTVGTASAFFAKARATFFSA
                     MNPQGSEQDVEYSVVQHADGEKSNVLRKLLKRANSYEDAMMPFPGATIISQLLKNNMN
                     KNGGTEPSFQASGLSSTGSEVHQEDICSNSSRDSPPECLSPFGRPTMSQFDMDRLCDE
                     HLRAKRARVENIIRGMSHSPSVALRGNENERDMAPQSVSPRESYRENKRKQKLPQQQQ
                     QSFQQLVSARKEQKREERRQLKQQLEDMQKQLRQLQEKFYQIYDSTDSENDEDGNLSE
                     DSMRSEILDARAQDSVGRSDNEMCELDPGQFIDRARALIREQEMAENKPKREGNNKER
                     DHGPNSLQPEGKHLAETLKQELNTAMSQVVDTVVKVFSAKPSRQVPQVFPPLQIPQAR
                     FAVNGENHNFHTANQRLQCFGDVIIPNPLDTFGNVQMPSSTDQTEALPLVVRKNSSDQ
                     SASGPPAGGHHQPLHQSPLSATAGFTTSTFRHPFPLPLMAYPFQSPLGAPSGSFSGKD
                     RASPESLDLTRETTSLRTKMSSHHLSHHPCSPAHPPSTAEGLSLSLIKSECGDLQDMS
                     EISPYSGSAMQEGLSPNHLKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWF
                     SNFREFYYIQMEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFECGPWL"
     misc_feature    <519..1493
                     /gene="PROX1"
                     /note="Chromosome segregation protein NDC80, interacts
                     with SMC proteins [Cell cycle control, cell division,
                     chromosome partitioning]; Region: HEC1; COG5185"
                     /db_xref="CDD:444066"
     misc_feature    1971..>2264
                     /gene="PROX1"
                     /note="Homeo-prospero domain; Region: HPD; pfam05044"
                     /db_xref="CDD:461534"
ORIGIN      
        1 tctcccctca ttctccccgt cggcccgctc gcgcgctccc gcacggactc accgtccctt
       61 gtccaattat catattcatc acccgcaaga tctcaccgtg cgtgtgcgcg cgcgtgtttt
      121 cctctctccg cctgcaaaaa aggctcggtc ccactgctct ctgcaccgag gtcccaggat
      181 tcttgagctg tgcccagctg acgagctttt gaagatggca caataactgt ccagtgatgc
      241 ctgaccatga cagcacagcc ctcttaagcc ggcaaaccaa gaggagaaga gttgacattg
      301 gagtgaaaag gacggtaggg acagcatctg cattttttgc taaggcaaga gcaacgtttt
      361 ttagtgccat gaatccccaa ggttccgagc aggatgttga gtattcagtg gtgcagcatg
      421 cagatgggga aaagtcaaat gtactccgca agctgctgaa gagggcgaac tcatatgaag
      481 atgccatgat gccttttcca ggagcaacca taatttccca gctgttgaaa aataacatga
      541 acaaaaatgg tggcacggag cccagtttcc aagccagcgg tctctctagt acaggctccg
      601 aagtacatca ggaggatata tgcagcaact cttcaagaga cagcccccca gagtgtcttt
      661 ccccttttgg caggcctact atgagccagt ttgatatgga tcgcttatgt gatgagcacc
      721 tgagagcaaa acgcgcccgg gttgagaata taatccgggg tatgagccat tcccccagtg
      781 tggcattacg gggcaatgaa aatgaaagag atatggcccc gcagtctgtg agtccccgag
      841 aaagttaccg agaaaacaaa cgcaagcaga agctgcccca gcagcagcaa cagagtttcc
      901 agcagctggt ttcagcccgc aaagaacaga agcgagagga gcgccgacag ctgaaacagc
      961 agctggagga catgcagaaa cagctgcgcc agctgcagga aaagttctac cagatctatg
     1021 acagcactga ttctgaaaat gatgaagatg gtaacctgtc tgaagacagc atgcgctcgg
     1081 agatcctgga tgccagggcc caggactccg tggggaggtc agacaatgag atgtgcgagc
     1141 tggacccggg gcagttcatc gaccgagccc gggccctgat ccgggagcag gaaatggctg
     1201 aaaacaagcc gaagcgagaa ggcaacaaca aagaaagaga ccacgggcca aactccttac
     1261 aacccgaagg caaacatttg gccgagacct tgaaacaaga actgaacact gccatgtcgc
     1321 aagttgtgga cactgtggtc aaagtcttct ccgccaaacc ctctcgccag gttcctcagg
     1381 tctttccgcc gctccagatc ccccaggcca gatttgcagt caacggggag aaccacaatt
     1441 tccacaccgc caaccagcgc ctgcagtgct ttggcgatgt catcattccg aaccccctgg
     1501 acacctttgg caatgtgcag atgcccagtt ccacagacca gacagaagca ctgcccctgg
     1561 tggtccgcaa aaactcatct gaccagtctg cctccggccc ccctgccggc ggtcaccacc
     1621 agcccctgca ccagtcgcct ctgtcggcca ccgcaggctt taccacgtcc accttccgcc
     1681 acccctttcc cctccccttg atggcctacc cgtttcagag tccattaggt gctccctccg
     1741 gctccttctc gggaaaagac agagcctctc ctgaatcctt agacttaact agggagacca
     1801 cgagtctgag gaccaagatg tcatcccacc acctgagcca ccatccttgt tcaccagcac
     1861 atccacccag caccgcagaa gggctctcct tgtctctcat caaatccgag tgtggcgatc
     1921 ttcaagacat gtccgaaatc tcaccttatt cgggaagtgc aatgcaggaa ggattgtcac
     1981 ccaatcactt gaaaaaagca aagctcatgt tcttttacac ccgttatccc agctccaaca
     2041 tgctgaaaac ctacttctct gatgtaaagt tcaacagatg cattacctct cagctcatca
     2101 agtggtttag caatttccgt gagttttact acattcagat ggagaagtac gcgcgtcaag
     2161 ccatcaacga tggggtcacc agtaccgaag agctgtctat aaccagagac tgtgagctgt
     2221 acagggctct gaacatgcac tacaataaag caaatgactt tgagtgtgga ccgtggctgt
     2281 gagccagaag tagacccagc acctctatct gatacctcag ctgctattgc ataca
//
LOCUS       XM_032611835            2291 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus H2.0 like homeobox (HLX), mRNA.
ACCESSION   XM_032611835
VERSION     XM_032611835.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-937               VOSU01000011.1     166894221-166895157 c
            938-938             "N"                1-1
            939-997             VOSU01000011.1     166894162-166894220 c
            998-1085            VOSU01000011.1     166894073-166894160 c
            1086-1265           VOSU01000011.1     166893114-166893293 c
            1266-1450           VOSU01000011.1     166892164-166892348 c
            1451-2291           VOSU01000011.1     166889577-166890417 c
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2291
                     /gene="HLX"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 5 Proteins, and 92% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116743444"
     CDS             494..1954
                     /gene="HLX"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: H2.0-like homeobox protein"
                     /protein_id="XP_032467726.1"
                     /db_xref="GeneID:116743444"
                     /translation="MFAAGLAPFYASNFSLWSAAYCSSAGPGGCSFPLDPAAVKKPSF
                     CIADILHAGVGETGAAPEGLAGASAAALTAHLGSAHPHASFQAATRSPLRPTPVVAPS
                     EVPAGFPPRLSPLSAAYHHHHPQQPPQQQQPQQQQPPAPPRAGSLQXPASGSRLVPNP
                     HHSASAPAPSSKDLKFGIDRILSAEFDPKVKEGNTLRDLTSLLTGGRPAGMHLPALQP
                     STGQFFASLDPINEASAILSPLSSNPRNSVQHQFQDTFPGPYAVLTKDTMPQTYKRKR
                     SWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHS
                     KEAQAQKDKDKEAGEKPSGGAPAGDGEPELSPSRSEGEAESESSDSESLDMAPSDTER
                     TEGAERSLHQTTVIKASAAGALLAASSGGSGGTGGGGGGGFNFGVLSSGSTGGAGSSG
                     GHSSGSGASELLPALQPALGSAPKSPEPAPAPLGGL"
     misc_feature    1310..1492
                     /gene="HLX"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 caaaactttg ggagttttta gagaggagtt tttttttttt cttcttatta cttttttttt
       61 ctttttaaac taacggacta ttattgttat tgttttaaat ttagctgtta aggcttagct
      121 gtttcagtgt ttctttcggt gcccgacgcc tgtctccccg gcttccctgg cgtttgtgga
      181 gccgcggccc ccgcccgcct agcggctcct gcacccctcg ctcgcctaca gcccgcgggg
      241 agcgcgggca ccgcgccgcc tttaaagtga ggccaggggc cgaggccgtg agtggccggg
      301 atccggccct cgcctcctcc ctcggtggcg ctagggctcc ctggcctccc ttcagttcgg
      361 acggagaaga gtaagcggat cgtccccggc tgggctgccg cctcctcctg gacttagcgc
      421 gtccctcccc gcgcccctcc ccacccaccg ggcccggcca ggccgcggcg gcagctccgt
      481 gcaccccgcc agaatgttcg ccgccgggct ggctcccttc tacgcgtcca acttcagcct
      541 gtggtcggcc gcctactgtt cctccgccgg cccgggcggc tgctccttcc cactggaccc
      601 cgctgccgtc aagaaaccct ccttctgcat cgcggacatc ctgcacgccg gcgttgggga
      661 gacgggggcg gctccggagg gtctggcggg ggcctcggcc gctgccctca ccgcacactt
      721 gggatcggct cacccgcacg cctctttcca agctgccacc agatccccgc ttcgacccac
      781 cccggtggtg gcgccctccg aagtcccggc tggcttccct ccgcggctgt ccccgctctc
      841 agccgcctac caccaccatc acccacaaca gccaccgcag cagcagcaac cgcagcagca
      901 gcagcctccg gctccacccc gggctggaag cttgcagncc ccagcctccg ggtcgcggct
      961 ggtcccgaat ccccaccata gcgcttccgc cccggccccc tccagtaagg acctcaaatt
     1021 tggaattgac cgcattttgt ctgcagaatt tgacccaaaa gtcaaggaag gcaacacact
     1081 gagagatctc acatcgctgc taaccggcgg gcggcccgcg gggatgcacc tccccgctct
     1141 gcagccctcc accggccagt tcttcgcgtc tctagatccc attaacgagg cttctgccat
     1201 cctgagtccc ttaagctcga acccgagaaa ttcagttcag catcagtttc aagacacctt
     1261 tccaggtccc tacgctgtgc tcacgaagga caccatgcca cagacgtaca agagaaagcg
     1321 ctcctggtca cgggcggtct tctccaacct gcagaggaaa ggtctggaga aaaggtttga
     1381 gattcagaag tacgtgacca agccagaccg aaagcagctg gccgcgatgc tgggtctcac
     1441 cgatgcccag gtgaaggtgt ggttccagaa ccggcggatg aagtggcgac actccaagga
     1501 ggcccaggcc cagaaggaca aagacaagga ggctggcgag aaaccgtcgg gcggagcccc
     1561 ggctggcgac ggcgagccgg agctgagccc cagccgctcg gagggcgagg ctgagagcga
     1621 gagtagcgac tccgagtctc tggacatggc ccccagcgac acggagcgga ctgaaggggc
     1681 cgagcggtct ctgcaccaaa cgacggtcat caaggcctcg gccgccggcg ccctcctcgc
     1741 cgccagcagc ggaggcagtg gcgggaccgg cggcggcggc ggcggcggtt ttaacttcgg
     1801 cgtcctcagt agcggcagca ccggcggcgc cgggagctcc ggcggccaca gcagcggcag
     1861 cggcgcctcg gagctgctcc ctgcgctcca gccagccctt ggcagcgccc ccaaaagccc
     1921 cgagcccgcc ccggcgccgc tcggcggcct ctagactgga cgaggttgga ggagacgcgg
     1981 ggccctgcgt gcaggctccc agccttccag tgtgggctgg attctgtgcc tactttccag
     2041 tggcggcggg agtcgcagct tgcgcatcgc tgtcccggcc ggtgcagccc accccgccca
     2101 gagccgaggg gagtcggagt gcctctcgcc aggctcccag cgcccgccga gcacttttgc
     2161 ctggatacaa gcagctcgca ctgtgaagcg ttggactaaa cagtcctccc cgcattaggg
     2221 gtcgtggcgg aaagacgatg cacttaggat gccacagact tgtaaataaa atgtttacta
     2281 tggtttgtaa a
//
LOCUS       XM_032611850            6908 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus exonuclease 1 (EXO1), transcript variant
            X1, mRNA.
ACCESSION   XM_032611850
VERSION     XM_032611850.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6908
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6908
                     /gene="EXO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743449"
     CDS             407..2914
                     /gene="EXO1"
                     /codon_start=1
                     /product="exonuclease 1 isoform X1"
                     /protein_id="XP_032467741.1"
                     /db_xref="GeneID:116743449"
                     /translation="MGIQGLLQFIKEASEPIHMRKYKGQVVAVDTYCWLHKGAVACAE
                     KLAKGEPTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLK
                     GKQLLREGKVSEARECFTRSINITHAMAHNVIKAARSQGVDCLVAPYEADAQLAYLNK
                     AGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEEKFRYM
                     CILSGCDYLSSLRGIGLAKACKVLRLANNPDILKVIKKIGHYLKMNITVPEDYIKGFI
                     RANNTFLYQLVFDPIKRKLIPLNAYEDDIDPETLSYAGRYVDDSIALQIALGNKDINT
                     FEQIDDYNPDTAVPAQSRSHSWTDKTCQKSSNINSIWNRSYCPRLELDIVSDATKVKE
                     NPSTVGIELVISTKGLNLPRKSSIAKRPRSEELSEDDLFGQYSTSFTKKIKKNSCEGD
                     KLLNSSERFMPDLVDGNTIKKSLSTPPRTRNKFATFLQRKNEESGAVVVPGTRSRFFS
                     NSLGSADCISKKASSQSLDETAVTDKEANVNESDCLDGKKLLDISVAHNSSEHIPDDV
                     TVIAEESQSFKTSRFTRTISPPTSGTLRSCFSWSGSLGEFSRTPSPSPSTALQQFLRN
                     SDSAICLPENNEPSDVSQLKSDESSDESHPLHEVDWSSQSQESMDLSPHNLNASKLSQ
                     PSSKDLDSEESDCNFKSLDNQGNQKSKLYLFHFSKKGTLLRNKVPGLYKSSSVDSLST
                     TKIKPLVPARVSGLSKKPSSIHKRNHHNAENKPELQIKINELWKNFVFKKDSEKLPSC
                     KKPDPLSPVKDNIQLTPEEEDIFNNSDCMRVQRAIFQ"
     misc_feature    407..1009
                     /gene="EXO1"
                     /note="FEN-like PIN domains of Exonuclease-1, a
                     structure-specific, divalent-metal-ion dependent, 5'
                     nuclease and homologs; Region: PIN_EXO1; cd09857"
                     /db_xref="CDD:350207"
     misc_feature    order(410..418,425..430,494..496,500..505,512..517,
                     524..529,566..568,578..580,638..640,659..661,671..673,
                     680..682,689..694,755..757,764..769,854..856,860..862,
                     914..925,959..961)
                     /gene="EXO1"
                     /note="active site"
                     /db_xref="CDD:350207"
     misc_feature    order(656..733,737..787)
                     /gene="EXO1"
                     /note="helical arch; other site"
                     /db_xref="CDD:350207"
     misc_feature    1043..1273
                     /gene="EXO1"
                     /note="H3TH domain of Exonuclease-1, a structure-specific,
                     divalent-metal-ion dependent, 5' nuclease; Region:
                     H3TH_EXO1; cd09908"
                     /db_xref="CDD:188628"
     misc_feature    order(1070..1087,1091..1108,1112..1123)
                     /gene="EXO1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:188628"
     misc_feature    1079..1081
                     /gene="EXO1"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:188628"
ORIGIN      
        1 tgccggggca cagctgcgtc cctgtgcccc tgccccttga gttccccgaa gccgcctagc
       61 gtgctccggc ccaggcgagt gggggccttg aggataggct tctgagccct cacagggctg
      121 ccctccgacg gacggcgcgg gacctagccg ggaagcgagc ggagcgggct gttcagggca
      181 cgcggccaaa ggaacgtgtt tcctggaaag ggcctgtggg cctccctgcc aatccctgtg
      241 aaacgggatg gagcggtgac gttgtgctgt cactactact tggtgctgcg ggcggtctcc
      301 tgaggatgct ttgtgcctaa ggccccgcat cgttctcatt gtgctgaaga ggaaacattt
      361 attcgagaat atttacctaa cttagaaaaa aatttaactt ggcactatgg ggatacaagg
      421 attactgcaa tttatcaaag aagcttctga acctatccac atgaggaagt ataaagggca
      481 ggtagtagct gtggatacat actgctggct tcacaaagga gctgtagctt gtgctgaaaa
      541 actagccaaa ggtgaaccta ccgataagta tgtaggattt tgtatgaaat ttgtaaatat
      601 gttactatct catgggatca agcctatcct ggtatttgat ggatgtactt taccttctaa
      661 aaaggaagtg gagaagtcta gaagagaaag aagacaagcc aatcttctta agggaaagca
      721 gcttcttcgt gaggggaagg tctcagaagc cagagaatgt ttcacccgtt ctatcaatat
      781 cacacacgct atggcccaca acgtaattaa ggctgctcgg tctcagggag tagattgtct
      841 tgtggctcca tatgaagcag atgcacagtt ggcctatctt aacaaggctg gtattgtaca
      901 agctgtaatt acagaagact ctgatctcct cgcttttggc tgtaaaaagg ttattttaaa
      961 aatggaccag tttggaaatg gactagaagt tgatcaggct cggctaggaa tgtgcaaaca
     1021 gcttggggat gtgttcacag aagagaagtt ccgttatatg tgcattcttt caggctgtga
     1081 ctatctctca tcactgcgtg ggattggatt agccaaggcc tgcaaagtac taagactagc
     1141 caataatcca gatattttaa aggttatcaa gaaaattgga cattatctca agatgaatat
     1201 aacagtacca gaagattaca tcaaaggctt tattcgggcc aataatacct tcctctatca
     1261 gctagttttt gatcccatca aaaggaaact catccctttg aatgcctatg aagacgacat
     1321 tgatcctgaa acactaagct atgctgggcg atatgttgat gattctatag ctcttcaaat
     1381 agcacttgga aataaagata taaatacttt cgaacagatt gatgactaca atccagacac
     1441 tgccgtgcct gcccaatcaa gaagtcatag ttggactgac aaaacatgtc aaaagtcatc
     1501 taatattaat agcatttgga ataggagcta ttgccctaga cttgagctgg acattgtttc
     1561 agatgctaca aaggtgaagg aaaatccaag tactgtgggc attgaactag tgattagtac
     1621 taaaggatta aatcttccaa ggaagtcatc cattgcaaaa aggccaagaa gtgaagagct
     1681 atcagaagat gatctatttg gtcagtattc tacttccttt acaaagaaga tcaagaaaaa
     1741 tagttgtgaa ggtgataaat tattgaactc ttctgaacga tttatgcctg acctggtaga
     1801 tggaaatact attaaaaaaa gcttaagcac accacctagg acgagaaaca aatttgcaac
     1861 atttttacag agaaaaaatg aagaaagtgg tgcagttgtg gttccaggaa ccagaagcag
     1921 gtttttttcc aattctctgg gttctgctga ctgtatatca aagaaagcaa gcagccagtc
     1981 tctagatgaa actgctgtca cagataaaga agctaatgta aatgaatcag attgtctaga
     2041 tggcaagaag ttgttagata tcagtgtagc acataattca agtgagcata ttccagatga
     2101 tgtgactgtg attgctgaag agtctcagtc ttttaagacc agcagattca cgaggaccat
     2161 ctcaccaccc acctcgggta cactaagaag ttgtttcagt tggtctggaa gtcttggaga
     2221 gttttcaaga acaccaagcc cctctccaag cacagcattg cagcagttcc ttagaaatag
     2281 tgattctgcc atctgtctgc ctgagaataa tgagccgtct gatgtatctc agttaaagag
     2341 tgatgagtca agtgatgaat ctcatccctt acatgaagtg gattggtctt cacagtctca
     2401 ggaaagcatg gacttatcac cacacaattt aaatgcatca aaactttctc agccttctag
     2461 taaggattta gattcagagg aatctgattg caattttaag tcacttgata atcaaggtaa
     2521 tcagaaatcc aagctatact tatttcattt ttcgaaaaaa ggcacgcttc taaggaacaa
     2581 ggttcctggg ctgtataaat ctagttctgt ggacagtctt tctacaacca agatcaaacc
     2641 tttagtacct gccagagtca gtgggctgag caagaagcca tcaagcatcc ataagagaaa
     2701 tcatcataat gccgagaaca agccagaatt gcagataaaa atcaatgaac tctggaaaaa
     2761 ttttgtattt aaaaaagatt ctgaaaagct tccttcttgt aagaagccag atcccctgtc
     2821 tccagtcaaa gataacatcc agctaactcc agaagaagag gatatattta acaattctga
     2881 ctgtatgcgt gttcagagag caatattcca ataaacacag gaagctggga ggctattgcc
     2941 tgcaagagaa tctctatcaa tttcatgtcc tgtttgagaa tgaagcagtt atcagtatga
     3001 aagacttgtt cttagatcta tgctatttat ttttaaatag agtacatttt gtatattaac
     3061 tatgtaactg tttttgttca gcttattata ttttcataag aagctaacta gagaaataat
     3121 tttggttttg acaggttttt gaagttttaa tgttaattga gcaagtccct tggaacttac
     3181 aaaaatctac tctaaagatt tctgtaatgt tgtcaagtac aaggatggta aatggaaaac
     3241 cacaattctg tggtcatttt gtactagagg aaattactgt gtttctttga gctatagttt
     3301 tttcacctgc ctttcctgtc tgtctttcag ggttgaattg gatatacagt tgctgggatg
     3361 ggaggggtag ttggaagggt taaagatcat tgcataaatg gggcagtgct ctattttccc
     3421 tgaagagttt ggttgggtta cagattgaca gtaaaagaaa attggtttca gcatcatatg
     3481 aaaggcacta cttcttatat cattaatatt cttaaacttc aaaatagcct atttctctta
     3541 tatgtctttt ttgaagtgtg ggttaaaaat tccctaacgt atatttaaaa ctagtatcct
     3601 aggtgcaatg taaaatatga aagctgcagg gtctgtgatg tgtacatact ctgcaaagaa
     3661 atagattctc ggaaagaaaa ccagatatgc aagtgaagat ctgaagtaag gaagtgaagt
     3721 aagtgacaat ctgacaggaa gtaaaggaat tgtaaaagtg tctgatatag aggataaagg
     3781 aaagggatcc agagcatttt aatttttaaa tgagacttaa tagaggaggt cagagtggaa
     3841 caaaaaacat aacattgtaa gaaacagcat aaaaatgtta gaaggggaaa aaaaattttt
     3901 ttaaaatctg gaaaagatca aatacaaaga acaaaagcaa atttgaactt tctggaatgt
     3961 ttcctgttat agaacaaatt aagaaaggga agatggtagc agtgctgtag tttgtcaatc
     4021 tctgaaccgt cgcatagcag caactggata gcaaagtcaa aatactaatg aacaacatta
     4081 caacaaattt agatggcatc atatacttaa atcctgaaat ataagtgggt gaagacaagc
     4141 taccgaaagc cacaagacca caaagtggta ctggcgtcta tttgggagaa gtagagcatg
     4201 gcaatagggc atctaatgga cctgagaaca gaacttaaat agaatgattg ttgaaacaca
     4261 tagcaggcca agttgcaaac agccatttga aactgggaga tgctttgagc attccagtgg
     4321 tgagtgagtg caggagacct acagtaatgt ctgaaggaat gaagcaatgt agtccatatg
     4381 aacttttgaa atgatttgcc atatttgtca aggctccaca gaagagaaac tgctggctgt
     4441 aaaaccaaaa ttgagcagga gagtgacaat aggcacaaag gaagataagg ttaaatacag
     4501 tgaagggagg aattgttgac caagaaatct cagcagaatg ctgtttttgt ttttgaacac
     4561 tgaaaacaaa aacaaaaacc accaacaaca aaacagctga ggtttgagaa ggcctcatga
     4621 cccatgcctc ctcaaagtta aagaaaatta tttttactta aaaagaaacc acatagggct
     4681 tccctggtgg cacagtggtt gacagtccgc ctgccgatgc aggggacacg ggttcgtgcc
     4741 ccggtccggg aagatcccac atgtcgcgga gcagctgggc ccgtgagcca aaagaaacca
     4801 cataaaagtt tttagatcaa tcccttacaa aattgattta aaggagtcaa gagcagaata
     4861 acgtctttac aaataatgaa aatctaccag aaaggtcctg agagcagatc aaaaccagtc
     4921 tatttcaaaa tgtgctagaa gttattaaga aaatagtgta ggatacgaag gaaatttaga
     4981 attggaaaaa ctcagaagaa aaataaaaaa gataagctca ggaaaggatt agaaaaaaat
     5041 ttcggaaatt aaggctaaac tagaaggaac acaagcaaat aaacatacag atagacgatg
     5101 ccttaaaaga aataggtaaa aatcaaaaca aaatggaaaa agaacacttt aaaagagtag
     5161 gaagtgacag atgttgaaga tgaggcagaa ggtccaatat acagataata ggagtctctg
     5221 aagaaaaaaa accctatttt cagaaaacgt taatttttaa aagatttgaa gctatttttt
     5281 aaatgcacta ttatacccaa gattattgat cccaaactgc caacaccaag acataagtga
     5341 caacaagtta ctttaaagaa aggaaaaatc ctctgggtag gcaagaacag caagtgacat
     5401 gtaaggaaaa aaaaagatga tcatcacact tttccacaat tattctttat acatgaagaa
     5461 aatggagtaa cttgttaaag atattcaagg gaaaatgtaa gcaaaggctt ttatattcaa
     5521 caaaatcaac tttcaattat aaagggcaca aacttatcca tcgaacaaga atttggaaaa
     5581 tactgctcac taagctcttc ctgaggaatc agaaaataac tgaaatagaa aaacagcact
     5641 ataaagattg gtggtgacca tcaaacatag tgacttgtac aattaaaaat ttgggagcta
     5701 aaggggagag tatgatatgc aatggctgta tgtccagatg acacaggtag tataactaca
     5761 gaggagagac catatgcaaa acatttggtt tagctcgtag tagtagtctg atattgttat
     5821 tttaggacca ttctgcatat aatgtgggat agtataaatg aatatttatg ggatatttta
     5881 attcatcccc aattttcttg agaaccagaa tttttaatgt ctagagaaag gagatacaga
     5941 taaaatacag aacaggttaa ttttttttta atgtagttat aaacttggga gtactgatag
     6001 agacttatga atgtatatac acacatacta tatatataca tgtatatgca tatatatata
     6061 tacacactga agagacccag aaaaaaaatc cagtaccaat gagcatccct atcactcaac
     6121 ttgtagtctt aaaatacaat ttttcaccaa aagaaatgag agcttcttgg aaaaatagtc
     6181 tggaaaagaa gtgtaaagga caagcctggg atatcttgtt aaaacagaag cctttactga
     6241 ctactaatgt aatttcaaaa tgattgagga gacacctgaa gaggccccca ctgtccaaac
     6301 atgggagaat ttgatcttga aaagataatt gtttactgga acccatcata agcattttaa
     6361 aaaattggtc accttcagag gatgatagaa tatcaattca ttatcttgaa tatgggaaaa
     6421 taaaagaaat atcaggcatt ttccctgtct gtactgtacc aatgggtaat aaaacaagat
     6481 aaatctcttt ttactgttct aataatgaaa aagataatat caccattttg caacccccgg
     6541 tggattaatg gatttaggct ttgagcatca gctgctatta acatcataac cagacatttt
     6601 ttgtctcata atgaaagaac tcagcatcct ctgtagtctt gccaagggat tggagatgag
     6661 tctgatcatt cctctggatc cagctgccga attgcaggaa atacagagga cagaggaaca
     6721 tgtgggactg caacatgagt gtgcaattag caaaatccag tctgcaagaa actacaggtt
     6781 aaatgccctt ggattctcaa cagataaatt gtaaggaagg ggatggagag gagaattcca
     6841 tattaaaaaa aggacagggc ttccctggtg gtgcagtggt tgagagtccg cttgttgatg
     6901 caggggac
//
LOCUS       XM_032611859            6905 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus exonuclease 1 (EXO1), transcript variant
            X2, mRNA.
ACCESSION   XM_032611859
VERSION     XM_032611859.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6905
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6905
                     /gene="EXO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743449"
     CDS             407..2911
                     /gene="EXO1"
                     /codon_start=1
                     /product="exonuclease 1 isoform X2"
                     /protein_id="XP_032467750.1"
                     /db_xref="GeneID:116743449"
                     /translation="MGIQGLLQFIKEASEPIHMRKYKGQVVAVDTYCWLHKGAVACAE
                     KLAKGEPTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLK
                     GKQLLREGKVSEARECFTRSINITHAMAHNVIKAARSQGVDCLVAPYEADAQLAYLNK
                     AGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEEKFRYM
                     CILSGCDYLSSLRGIGLAKACKVLRLANNPDILKVIKKIGHYLKMNITVPEDYIKGFI
                     RANNTFLYQLVFDPIKRKLIPLNAYEDDIDPETLSYAGRYVDDSIALQIALGNKDINT
                     FEQIDDYNPDTAVPAQSRSHSWTDKTCQKSSNINSIWNRSYCPRLELDIVSDATKVKE
                     NPSTVGIELVISTKGLNLPRKSSIAKRPRSELSEDDLFGQYSTSFTKKIKKNSCEGDK
                     LLNSSERFMPDLVDGNTIKKSLSTPPRTRNKFATFLQRKNEESGAVVVPGTRSRFFSN
                     SLGSADCISKKASSQSLDETAVTDKEANVNESDCLDGKKLLDISVAHNSSEHIPDDVT
                     VIAEESQSFKTSRFTRTISPPTSGTLRSCFSWSGSLGEFSRTPSPSPSTALQQFLRNS
                     DSAICLPENNEPSDVSQLKSDESSDESHPLHEVDWSSQSQESMDLSPHNLNASKLSQP
                     SSKDLDSEESDCNFKSLDNQGNQKSKLYLFHFSKKGTLLRNKVPGLYKSSSVDSLSTT
                     KIKPLVPARVSGLSKKPSSIHKRNHHNAENKPELQIKINELWKNFVFKKDSEKLPSCK
                     KPDPLSPVKDNIQLTPEEEDIFNNSDCMRVQRAIFQ"
     misc_feature    407..1009
                     /gene="EXO1"
                     /note="FEN-like PIN domains of Exonuclease-1, a
                     structure-specific, divalent-metal-ion dependent, 5'
                     nuclease and homologs; Region: PIN_EXO1; cd09857"
                     /db_xref="CDD:350207"
     misc_feature    order(410..418,425..430,494..496,500..505,512..517,
                     524..529,566..568,578..580,638..640,659..661,671..673,
                     680..682,689..694,755..757,764..769,854..856,860..862,
                     914..925,959..961)
                     /gene="EXO1"
                     /note="active site"
                     /db_xref="CDD:350207"
     misc_feature    order(656..733,737..787)
                     /gene="EXO1"
                     /note="helical arch; other site"
                     /db_xref="CDD:350207"
     misc_feature    1043..1273
                     /gene="EXO1"
                     /note="H3TH domain of Exonuclease-1, a structure-specific,
                     divalent-metal-ion dependent, 5' nuclease; Region:
                     H3TH_EXO1; cd09908"
                     /db_xref="CDD:188628"
     misc_feature    order(1070..1087,1091..1108,1112..1123)
                     /gene="EXO1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:188628"
     misc_feature    1079..1081
                     /gene="EXO1"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:188628"
ORIGIN      
        1 tgccggggca cagctgcgtc cctgtgcccc tgccccttga gttccccgaa gccgcctagc
       61 gtgctccggc ccaggcgagt gggggccttg aggataggct tctgagccct cacagggctg
      121 ccctccgacg gacggcgcgg gacctagccg ggaagcgagc ggagcgggct gttcagggca
      181 cgcggccaaa ggaacgtgtt tcctggaaag ggcctgtggg cctccctgcc aatccctgtg
      241 aaacgggatg gagcggtgac gttgtgctgt cactactact tggtgctgcg ggcggtctcc
      301 tgaggatgct ttgtgcctaa ggccccgcat cgttctcatt gtgctgaaga ggaaacattt
      361 attcgagaat atttacctaa cttagaaaaa aatttaactt ggcactatgg ggatacaagg
      421 attactgcaa tttatcaaag aagcttctga acctatccac atgaggaagt ataaagggca
      481 ggtagtagct gtggatacat actgctggct tcacaaagga gctgtagctt gtgctgaaaa
      541 actagccaaa ggtgaaccta ccgataagta tgtaggattt tgtatgaaat ttgtaaatat
      601 gttactatct catgggatca agcctatcct ggtatttgat ggatgtactt taccttctaa
      661 aaaggaagtg gagaagtcta gaagagaaag aagacaagcc aatcttctta agggaaagca
      721 gcttcttcgt gaggggaagg tctcagaagc cagagaatgt ttcacccgtt ctatcaatat
      781 cacacacgct atggcccaca acgtaattaa ggctgctcgg tctcagggag tagattgtct
      841 tgtggctcca tatgaagcag atgcacagtt ggcctatctt aacaaggctg gtattgtaca
      901 agctgtaatt acagaagact ctgatctcct cgcttttggc tgtaaaaagg ttattttaaa
      961 aatggaccag tttggaaatg gactagaagt tgatcaggct cggctaggaa tgtgcaaaca
     1021 gcttggggat gtgttcacag aagagaagtt ccgttatatg tgcattcttt caggctgtga
     1081 ctatctctca tcactgcgtg ggattggatt agccaaggcc tgcaaagtac taagactagc
     1141 caataatcca gatattttaa aggttatcaa gaaaattgga cattatctca agatgaatat
     1201 aacagtacca gaagattaca tcaaaggctt tattcgggcc aataatacct tcctctatca
     1261 gctagttttt gatcccatca aaaggaaact catccctttg aatgcctatg aagacgacat
     1321 tgatcctgaa acactaagct atgctgggcg atatgttgat gattctatag ctcttcaaat
     1381 agcacttgga aataaagata taaatacttt cgaacagatt gatgactaca atccagacac
     1441 tgccgtgcct gcccaatcaa gaagtcatag ttggactgac aaaacatgtc aaaagtcatc
     1501 taatattaat agcatttgga ataggagcta ttgccctaga cttgagctgg acattgtttc
     1561 agatgctaca aaggtgaagg aaaatccaag tactgtgggc attgaactag tgattagtac
     1621 taaaggatta aatcttccaa ggaagtcatc cattgcaaaa aggccaagaa gtgagctatc
     1681 agaagatgat ctatttggtc agtattctac ttcctttaca aagaagatca agaaaaatag
     1741 ttgtgaaggt gataaattat tgaactcttc tgaacgattt atgcctgacc tggtagatgg
     1801 aaatactatt aaaaaaagct taagcacacc acctaggacg agaaacaaat ttgcaacatt
     1861 tttacagaga aaaaatgaag aaagtggtgc agttgtggtt ccaggaacca gaagcaggtt
     1921 tttttccaat tctctgggtt ctgctgactg tatatcaaag aaagcaagca gccagtctct
     1981 agatgaaact gctgtcacag ataaagaagc taatgtaaat gaatcagatt gtctagatgg
     2041 caagaagttg ttagatatca gtgtagcaca taattcaagt gagcatattc cagatgatgt
     2101 gactgtgatt gctgaagagt ctcagtcttt taagaccagc agattcacga ggaccatctc
     2161 accacccacc tcgggtacac taagaagttg tttcagttgg tctggaagtc ttggagagtt
     2221 ttcaagaaca ccaagcccct ctccaagcac agcattgcag cagttcctta gaaatagtga
     2281 ttctgccatc tgtctgcctg agaataatga gccgtctgat gtatctcagt taaagagtga
     2341 tgagtcaagt gatgaatctc atcccttaca tgaagtggat tggtcttcac agtctcagga
     2401 aagcatggac ttatcaccac acaatttaaa tgcatcaaaa ctttctcagc cttctagtaa
     2461 ggatttagat tcagaggaat ctgattgcaa ttttaagtca cttgataatc aaggtaatca
     2521 gaaatccaag ctatacttat ttcatttttc gaaaaaaggc acgcttctaa ggaacaaggt
     2581 tcctgggctg tataaatcta gttctgtgga cagtctttct acaaccaaga tcaaaccttt
     2641 agtacctgcc agagtcagtg ggctgagcaa gaagccatca agcatccata agagaaatca
     2701 tcataatgcc gagaacaagc cagaattgca gataaaaatc aatgaactct ggaaaaattt
     2761 tgtatttaaa aaagattctg aaaagcttcc ttcttgtaag aagccagatc ccctgtctcc
     2821 agtcaaagat aacatccagc taactccaga agaagaggat atatttaaca attctgactg
     2881 tatgcgtgtt cagagagcaa tattccaata aacacaggaa gctgggaggc tattgcctgc
     2941 aagagaatct ctatcaattt catgtcctgt ttgagaatga agcagttatc agtatgaaag
     3001 acttgttctt agatctatgc tatttatttt taaatagagt acattttgta tattaactat
     3061 gtaactgttt ttgttcagct tattatattt tcataagaag ctaactagag aaataatttt
     3121 ggttttgaca ggtttttgaa gttttaatgt taattgagca agtcccttgg aacttacaaa
     3181 aatctactct aaagatttct gtaatgttgt caagtacaag gatggtaaat ggaaaaccac
     3241 aattctgtgg tcattttgta ctagaggaaa ttactgtgtt tctttgagct atagtttttt
     3301 cacctgcctt tcctgtctgt ctttcagggt tgaattggat atacagttgc tgggatggga
     3361 ggggtagttg gaagggttaa agatcattgc ataaatgggg cagtgctcta ttttccctga
     3421 agagtttggt tgggttacag attgacagta aaagaaaatt ggtttcagca tcatatgaaa
     3481 ggcactactt cttatatcat taatattctt aaacttcaaa atagcctatt tctcttatat
     3541 gtcttttttg aagtgtgggt taaaaattcc ctaacgtata tttaaaacta gtatcctagg
     3601 tgcaatgtaa aatatgaaag ctgcagggtc tgtgatgtgt acatactctg caaagaaata
     3661 gattctcgga aagaaaacca gatatgcaag tgaagatctg aagtaaggaa gtgaagtaag
     3721 tgacaatctg acaggaagta aaggaattgt aaaagtgtct gatatagagg ataaaggaaa
     3781 gggatccaga gcattttaat ttttaaatga gacttaatag aggaggtcag agtggaacaa
     3841 aaaacataac attgtaagaa acagcataaa aatgttagaa ggggaaaaaa aattttttta
     3901 aaatctggaa aagatcaaat acaaagaaca aaagcaaatt tgaactttct ggaatgtttc
     3961 ctgttataga acaaattaag aaagggaaga tggtagcagt gctgtagttt gtcaatctct
     4021 gaaccgtcgc atagcagcaa ctggatagca aagtcaaaat actaatgaac aacattacaa
     4081 caaatttaga tggcatcata tacttaaatc ctgaaatata agtgggtgaa gacaagctac
     4141 cgaaagccac aagaccacaa agtggtactg gcgtctattt gggagaagta gagcatggca
     4201 atagggcatc taatggacct gagaacagaa cttaaataga atgattgttg aaacacatag
     4261 caggccaagt tgcaaacagc catttgaaac tgggagatgc tttgagcatt ccagtggtga
     4321 gtgagtgcag gagacctaca gtaatgtctg aaggaatgaa gcaatgtagt ccatatgaac
     4381 ttttgaaatg atttgccata tttgtcaagg ctccacagaa gagaaactgc tggctgtaaa
     4441 accaaaattg agcaggagag tgacaatagg cacaaaggaa gataaggtta aatacagtga
     4501 agggaggaat tgttgaccaa gaaatctcag cagaatgctg tttttgtttt tgaacactga
     4561 aaacaaaaac aaaaaccacc aacaacaaaa cagctgaggt ttgagaaggc ctcatgaccc
     4621 atgcctcctc aaagttaaag aaaattattt ttacttaaaa agaaaccaca tagggcttcc
     4681 ctggtggcac agtggttgac agtccgcctg ccgatgcagg ggacacgggt tcgtgccccg
     4741 gtccgggaag atcccacatg tcgcggagca gctgggcccg tgagccaaaa gaaaccacat
     4801 aaaagttttt agatcaatcc cttacaaaat tgatttaaag gagtcaagag cagaataacg
     4861 tctttacaaa taatgaaaat ctaccagaaa ggtcctgaga gcagatcaaa accagtctat
     4921 ttcaaaatgt gctagaagtt attaagaaaa tagtgtagga tacgaaggaa atttagaatt
     4981 ggaaaaactc agaagaaaaa taaaaaagat aagctcagga aaggattaga aaaaaatttc
     5041 ggaaattaag gctaaactag aaggaacaca agcaaataaa catacagata gacgatgcct
     5101 taaaagaaat aggtaaaaat caaaacaaaa tggaaaaaga acactttaaa agagtaggaa
     5161 gtgacagatg ttgaagatga ggcagaaggt ccaatataca gataatagga gtctctgaag
     5221 aaaaaaaacc ctattttcag aaaacgttaa tttttaaaag atttgaagct attttttaaa
     5281 tgcactatta tacccaagat tattgatccc aaactgccaa caccaagaca taagtgacaa
     5341 caagttactt taaagaaagg aaaaatcctc tgggtaggca agaacagcaa gtgacatgta
     5401 aggaaaaaaa aagatgatca tcacactttt ccacaattat tctttataca tgaagaaaat
     5461 ggagtaactt gttaaagata ttcaagggaa aatgtaagca aaggctttta tattcaacaa
     5521 aatcaacttt caattataaa gggcacaaac ttatccatcg aacaagaatt tggaaaatac
     5581 tgctcactaa gctcttcctg aggaatcaga aaataactga aatagaaaaa cagcactata
     5641 aagattggtg gtgaccatca aacatagtga cttgtacaat taaaaatttg ggagctaaag
     5701 gggagagtat gatatgcaat ggctgtatgt ccagatgaca caggtagtat aactacagag
     5761 gagagaccat atgcaaaaca tttggtttag ctcgtagtag tagtctgata ttgttatttt
     5821 aggaccattc tgcatataat gtgggatagt ataaatgaat atttatggga tattttaatt
     5881 catccccaat tttcttgaga accagaattt ttaatgtcta gagaaaggag atacagataa
     5941 aatacagaac aggttaattt ttttttaatg tagttataaa cttgggagta ctgatagaga
     6001 cttatgaatg tatatacaca catactatat atatacatgt atatgcatat atatatatac
     6061 acactgaaga gacccagaaa aaaaatccag taccaatgag catccctatc actcaacttg
     6121 tagtcttaaa atacaatttt tcaccaaaag aaatgagagc ttcttggaaa aatagtctgg
     6181 aaaagaagtg taaaggacaa gcctgggata tcttgttaaa acagaagcct ttactgacta
     6241 ctaatgtaat ttcaaaatga ttgaggagac acctgaagag gcccccactg tccaaacatg
     6301 ggagaatttg atcttgaaaa gataattgtt tactggaacc catcataagc attttaaaaa
     6361 attggtcacc ttcagaggat gatagaatat caattcatta tcttgaatat gggaaaataa
     6421 aagaaatatc aggcattttc cctgtctgta ctgtaccaat gggtaataaa acaagataaa
     6481 tctcttttta ctgttctaat aatgaaaaag ataatatcac cattttgcaa cccccggtgg
     6541 attaatggat ttaggctttg agcatcagct gctattaaca tcataaccag acattttttg
     6601 tctcataatg aaagaactca gcatcctctg tagtcttgcc aagggattgg agatgagtct
     6661 gatcattcct ctggatccag ctgccgaatt gcaggaaata cagaggacag aggaacatgt
     6721 gggactgcaa catgagtgtg caattagcaa aatccagtct gcaagaaact acaggttaaa
     6781 tgcccttgga ttctcaacag ataaattgta aggaagggga tggagaggag aattccatat
     6841 taaaaaaagg acagggcttc cctggtggtg cagtggttga gagtccgctt gttgatgcag
     6901 gggac
//
LOCUS       XM_032611867            9147 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus exonuclease 1 (EXO1), transcript variant
            X3, mRNA.
ACCESSION   XM_032611867
VERSION     XM_032611867.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9147
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9147
                     /gene="EXO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, and 86%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743449"
     CDS             426..2831
                     /gene="EXO1"
                     /codon_start=1
                     /product="exonuclease 1 isoform X3"
                     /protein_id="XP_032467758.1"
                     /db_xref="GeneID:116743449"
                     /translation="MGIQGLLQFIKEASEPIHMRKYKGQVVAVDTYCWLHKGAVACAE
                     KLAKGEPTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLK
                     GKQLLREGKVSEARECFTRSINITHAMAHNVIKAARSQGVDCLVAPYEADAQLAYLNK
                     AGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEEKFRYM
                     CILSGCDYLSSLRGIGLAKACKVLRLANNPDILKVIKKIGHYLKMNITVPEDYIKGFI
                     RANNTFLYQLVFDPIKRKLIPLNAYEDDIDPETLSYAGRYVDDSIALQIALGNKDINT
                     FEQIDDYNPDTAVPAQSRSHSWTDKTCQKSSNINSIWNRSYCPRLELDIVSDATKVKE
                     NPSTVGIELVISTKGLNLPRKSSIAKRPRSEELSEDDLFGQYSTSFTKKIKKNSCEGD
                     KLLNSSERFMPDLVDGNTIKKSLSTPPRTRNKFATFLQRKNEESGAVVVPGTRSRFFS
                     NSLGSADCISKKASSQSLDETAVTDKEANVNESDCLDGKKLLDISVAHNSSEHIPDDV
                     TVIAEESQSFKTSRFTRTISPPTSGTLRSCFSWSGSLGEFSRTPSPSPSTALQQFLRN
                     SDSAICLPENNEPSDVSQLKSDESSDESHPLHEVDWSSQSQESMDLSPHNLNASKLSQ
                     PSSKDLDSEVPGLYKSSSVDSLSTTKIKPLVPARVSGLSKKPSSIHKRNHHNAENKPE
                     LQIKINELWKNFVFKKDSEKLPSCKKPDPLSPVKDNIQLTPEEEDIFNNSDCMRVQRA
                     IFQ"
     misc_feature    426..1028
                     /gene="EXO1"
                     /note="FEN-like PIN domains of Exonuclease-1, a
                     structure-specific, divalent-metal-ion dependent, 5'
                     nuclease and homologs; Region: PIN_EXO1; cd09857"
                     /db_xref="CDD:350207"
     misc_feature    order(429..437,444..449,513..515,519..524,531..536,
                     543..548,585..587,597..599,657..659,678..680,690..692,
                     699..701,708..713,774..776,783..788,873..875,879..881,
                     933..944,978..980)
                     /gene="EXO1"
                     /note="active site"
                     /db_xref="CDD:350207"
     misc_feature    order(675..752,756..806)
                     /gene="EXO1"
                     /note="helical arch; other site"
                     /db_xref="CDD:350207"
     misc_feature    1062..1292
                     /gene="EXO1"
                     /note="H3TH domain of Exonuclease-1, a structure-specific,
                     divalent-metal-ion dependent, 5' nuclease; Region:
                     H3TH_EXO1; cd09908"
                     /db_xref="CDD:188628"
     misc_feature    order(1089..1106,1110..1127,1131..1142)
                     /gene="EXO1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:188628"
     misc_feature    1098..1100
                     /gene="EXO1"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:188628"
     misc_feature    <2091..>2606
                     /gene="EXO1"
                     /note="AF-4 proto-oncoprotein N-terminal region; Region:
                     AF-4; pfam05110"
                     /db_xref="CDD:461550"
ORIGIN      
        1 gcaaattgaa aggtccggat gccggggcac agctgcgtcc ctgtgcccct gccccttgag
       61 ttccccgaag ccgcctagcg tgctccggcc caggcgagtg ggggccttga ggataggctt
      121 ctgagccctc acagggctgc cctccgacgg acggcgcggg acctagccgg gaagcgagcg
      181 gagcgggctg ttcagggcac gcggccaaag gaacgtgttt cctggaaagg gcctgtgggc
      241 ctccctgcca atccctgtga aacgggatgg agcggtgacg ttgtgctgtc actactactt
      301 ggtgctgcgg gcggtctcct gaggatgctt tgtgcctaag gccccgcatc gttctcattg
      361 tgctgaagag gaaacattta ttcgagaata tttacctaac ttagaaaaaa atttaacttg
      421 gcactatggg gatacaagga ttactgcaat ttatcaaaga agcttctgaa cctatccaca
      481 tgaggaagta taaagggcag gtagtagctg tggatacata ctgctggctt cacaaaggag
      541 ctgtagcttg tgctgaaaaa ctagccaaag gtgaacctac cgataagtat gtaggatttt
      601 gtatgaaatt tgtaaatatg ttactatctc atgggatcaa gcctatcctg gtatttgatg
      661 gatgtacttt accttctaaa aaggaagtgg agaagtctag aagagaaaga agacaagcca
      721 atcttcttaa gggaaagcag cttcttcgtg aggggaaggt ctcagaagcc agagaatgtt
      781 tcacccgttc tatcaatatc acacacgcta tggcccacaa cgtaattaag gctgctcggt
      841 ctcagggagt agattgtctt gtggctccat atgaagcaga tgcacagttg gcctatctta
      901 acaaggctgg tattgtacaa gctgtaatta cagaagactc tgatctcctc gcttttggct
      961 gtaaaaaggt tattttaaaa atggaccagt ttggaaatgg actagaagtt gatcaggctc
     1021 ggctaggaat gtgcaaacag cttggggatg tgttcacaga agagaagttc cgttatatgt
     1081 gcattctttc aggctgtgac tatctctcat cactgcgtgg gattggatta gccaaggcct
     1141 gcaaagtact aagactagcc aataatccag atattttaaa ggttatcaag aaaattggac
     1201 attatctcaa gatgaatata acagtaccag aagattacat caaaggcttt attcgggcca
     1261 ataatacctt cctctatcag ctagtttttg atcccatcaa aaggaaactc atccctttga
     1321 atgcctatga agacgacatt gatcctgaaa cactaagcta tgctgggcga tatgttgatg
     1381 attctatagc tcttcaaata gcacttggaa ataaagatat aaatactttc gaacagattg
     1441 atgactacaa tccagacact gccgtgcctg cccaatcaag aagtcatagt tggactgaca
     1501 aaacatgtca aaagtcatct aatattaata gcatttggaa taggagctat tgccctagac
     1561 ttgagctgga cattgtttca gatgctacaa aggtgaagga aaatccaagt actgtgggca
     1621 ttgaactagt gattagtact aaaggattaa atcttccaag gaagtcatcc attgcaaaaa
     1681 ggccaagaag tgaagagcta tcagaagatg atctatttgg tcagtattct acttccttta
     1741 caaagaagat caagaaaaat agttgtgaag gtgataaatt attgaactct tctgaacgat
     1801 ttatgcctga cctggtagat ggaaatacta ttaaaaaaag cttaagcaca ccacctagga
     1861 cgagaaacaa atttgcaaca tttttacaga gaaaaaatga agaaagtggt gcagttgtgg
     1921 ttccaggaac cagaagcagg tttttttcca attctctggg ttctgctgac tgtatatcaa
     1981 agaaagcaag cagccagtct ctagatgaaa ctgctgtcac agataaagaa gctaatgtaa
     2041 atgaatcaga ttgtctagat ggcaagaagt tgttagatat cagtgtagca cataattcaa
     2101 gtgagcatat tccagatgat gtgactgtga ttgctgaaga gtctcagtct tttaagacca
     2161 gcagattcac gaggaccatc tcaccaccca cctcgggtac actaagaagt tgtttcagtt
     2221 ggtctggaag tcttggagag ttttcaagaa caccaagccc ctctccaagc acagcattgc
     2281 agcagttcct tagaaatagt gattctgcca tctgtctgcc tgagaataat gagccgtctg
     2341 atgtatctca gttaaagagt gatgagtcaa gtgatgaatc tcatccctta catgaagtgg
     2401 attggtcttc acagtctcag gaaagcatgg acttatcacc acacaattta aatgcatcaa
     2461 aactttctca gccttctagt aaggatttag attcagaggt tcctgggctg tataaatcta
     2521 gttctgtgga cagtctttct acaaccaaga tcaaaccttt agtacctgcc agagtcagtg
     2581 ggctgagcaa gaagccatca agcatccata agagaaatca tcataatgcc gagaacaagc
     2641 cagaattgca gataaaaatc aatgaactct ggaaaaattt tgtatttaaa aaagattctg
     2701 aaaagcttcc ttcttgtaag aagccagatc ccctgtctcc agtcaaagat aacatccagc
     2761 taactccaga agaagaggat atatttaaca attctgactg tatgcgtgtt cagagagcaa
     2821 tattccaata aacacaggaa gctgggaggc tattgcctgc aagagaatct ctatcaattt
     2881 catgtcctgt ttgagaatga agcagttatc agtatgaaag acttgttctt agatctatgc
     2941 tatttatttt taaatagagt acattttgta tattaactat gtaactgttt ttgttcagct
     3001 tattatattt tcataagaag ctaactagag aaataatttt ggttttgaca ggtttttgaa
     3061 gttttaatgt taattgagca agtcccttgg aacttacaaa aatctactct aaagatttct
     3121 gtaatgttgt caagtacaag gatggtaaat ggaaaaccac aattctgtgg tcattttgta
     3181 ctagaggaaa ttactgtgtt tctttgagct atagtttttt cacctgcctt tcctgtctgt
     3241 ctttcagggt tgaattggat atacagttgc tgggatggga ggggtagttg gaagggttaa
     3301 agatcattgc ataaatgggg cagtgctcta ttttccctga agagtttggt tgggttacag
     3361 attgacagta aaagaaaatt ggtttcagca tcatatgaaa ggcactactt cttatatcat
     3421 taatattctt aaacttcaaa atagcctatt tctcttatat gtcttttttg aagtgtgggt
     3481 taaaaattcc ctaacgtata tttaaaacta gtatcctagg tgcaatgtaa aatatgaaag
     3541 ctgcagggtc tgtgatgtgt acatactctg caaagaaata gattctcgga aagaaaacca
     3601 gatatgcaag tgaagatctg aagtaaggaa gtgaagtaag tgacaatctg acaggaagta
     3661 aaggaattgt aaaagtgtct gatatagagg ataaaggaaa gggatccaga gcattttaat
     3721 ttttaaatga gacttaatag aggaggtcag agtggaacaa aaaacataac attgtaagaa
     3781 acagcataaa aatgttagaa ggggaaaaaa aattttttta aaatctggaa aagatcaaat
     3841 acaaagaaca aaagcaaatt tgaactttct ggaatgtttc ctgttataga acaaattaag
     3901 aaagggaaga tggtagcagt gctgtagttt gtcaatctct gaaccgtcgc atagcagcaa
     3961 ctggatagca aagtcaaaat actaatgaac aacattacaa caaatttaga tggcatcata
     4021 tacttaaatc ctgaaatata agtgggtgaa gacaagctac cgaaagccac aagaccacaa
     4081 agtggtactg gcgtctattt gggagaagta gagcatggca atagggcatc taatggacct
     4141 gagaacagaa cttaaataga atgattgttg aaacacatag caggccaagt tgcaaacagc
     4201 catttgaaac tgggagatgc tttgagcatt ccagtggtga gtgagtgcag gagacctaca
     4261 gtaatgtctg aaggaatgaa gcaatgtagt ccatatgaac ttttgaaatg atttgccata
     4321 tttgtcaagg ctccacagaa gagaaactgc tggctgtaaa accaaaattg agcaggagag
     4381 tgacaatagg cacaaaggaa gataaggtta aatacagtga agggaggaat tgttgaccaa
     4441 gaaatctcag cagaatgctg tttttgtttt tgaacactga aaacaaaaac aaaaaccacc
     4501 aacaacaaaa cagctgaggt ttgagaaggc ctcatgaccc atgcctcctc aaagttaaag
     4561 aaaattattt ttacttaaaa agaaaccaca tagggcttcc ctggtggcac agtggttgac
     4621 agtccgcctg ccgatgcagg ggacacgggt tcgtgccccg gtccgggaag atcccacatg
     4681 tcgcggagca gctgggcccg tgagccaaaa gaaaccacat aaaagttttt agatcaatcc
     4741 cttacaaaat tgatttaaag gagtcaagag cagaataacg tctttacaaa taatgaaaat
     4801 ctaccagaaa ggtcctgaga gcagatcaaa accagtctat ttcaaaatgt gctagaagtt
     4861 attaagaaaa tagtgtagga tacgaaggaa atttagaatt ggaaaaactc agaagaaaaa
     4921 taaaaaagat aagctcagga aaggattaga aaaaaatttc ggaaattaag gctaaactag
     4981 aaggaacaca agcaaataaa catacagata gacgatgcct taaaagaaat aggtaaaaat
     5041 caaaacaaaa tggaaaaaga acactttaaa agagtaggaa gtgacagatg ttgaagatga
     5101 ggcagaaggt ccaatataca gataatagga gtctctgaag aaaaaaaacc ctattttcag
     5161 aaaacgttaa tttttaaaag atttgaagct attttttaaa tgcactatta tacccaagat
     5221 tattgatccc aaactgccaa caccaagaca taagtgacaa caagttactt taaagaaagg
     5281 aaaaatcctc tgggtaggca agaacagcaa gtgacatgta aggaaaaaaa aagatgatca
     5341 tcacactttt ccacaattat tctttataca tgaagaaaat ggagtaactt gttaaagata
     5401 ttcaagggaa aatgtaagca aaggctttta tattcaacaa aatcaacttt caattataaa
     5461 gggcacaaac ttatccatcg aacaagaatt tggaaaatac tgctcactaa gctcttcctg
     5521 aggaatcaga aaataactga aatagaaaaa cagcactata aagattggtg gtgaccatca
     5581 aacatagtga cttgtacaat taaaaatttg ggagctaaag gggagagtat gatatgcaat
     5641 ggctgtatgt ccagatgaca caggtagtat aactacagag gagagaccat atgcaaaaca
     5701 tttggtttag ctcgtagtag tagtctgata ttgttatttt aggaccattc tgcatataat
     5761 gtgggatagt ataaatgaat atttatggga tattttaatt catccccaat tttcttgaga
     5821 accagaattt ttaatgtcta gagaaaggag atacagataa aatacagaac aggttaattt
     5881 ttttttaatg tagttataaa cttgggagta ctgatagaga cttatgaatg tatatacaca
     5941 catactatat atatacatgt atatgcatat atatatatac acactgaaga gacccagaaa
     6001 aaaaatccag taccaatgag catccctatc actcaacttg tagtcttaaa atacaatttt
     6061 tcaccaaaag aaatgagagc ttcttggaaa aatagtctgg aaaagaagtg taaaggacaa
     6121 gcctgggata tcttgttaaa acagaagcct ttactgacta ctaatgtaat ttcaaaatga
     6181 ttgaggagac acctgaagag gcccccactg tccaaacatg ggagaatttg atcttgaaaa
     6241 gataattgtt tactggaacc catcataagc attttaaaaa attggtcacc ttcagaggat
     6301 gatagaatat caattcatta tcttgaatat gggaaaataa aagaaatatc aggcattttc
     6361 cctgtctgta ctgtaccaat gggtaataaa acaagataaa tctcttttta ctgttctaat
     6421 aatgaaaaag ataatatcac cattttgcaa cccccggtgg attaatggat ttaggctttg
     6481 agcatcagct gctattaaca tcataaccag acattttttg tctcataatg aaagaactca
     6541 gcatcctctg tagtcttgcc aagggattgg agatgagtct gatcattcct ctggatccag
     6601 ctgccgaatt gcaggaaata cagaggacag aggaacatgt gggactgcaa catgagtgtg
     6661 caattagcaa aatccagtct gcaagaaact acaggttaaa tgcccttgga ttctcaacag
     6721 ataaattgta aggaagggga tggagaggag aattccatat taaaaaaagg acagggcttc
     6781 cctggtggtg cagtggttga gagtccgctt gttgatgcag gggacacggg ctcgtgcccc
     6841 ggtccgggaa aatcccacat gccgcggagc ggctgggccc gtgagccatg gccgctgagc
     6901 ctgtgcgtcc ggagcctgtg ctctgcaacg ggacaggcca caacagtgag aggcccgcgt
     6961 atcaaaaaaa aaaagacaca actaaactag tttatttagg gatgcacact ctggtgatta
     7021 aacaatagag aaatataaag aagtgataac tataaaattt acggtggtgg ttacaggggg
     7081 tggggtggtt ggacattgat attgaagcaa agcacatgga acagattctg ggaattgctg
     7141 acaaagtttt atttcctggg tggtgtattt tatgacagtt tgcttataat aatataactt
     7201 actaggctat ccatatcata aagtaaaatg ttggccgtat aatttattaa gccatttact
     7261 tgttttgtgt ggtctttcat attttctgtt ttacagtaat ttttaatagt attccatcaa
     7321 attgaaaatg taattgattg taagatgcat cattatttta tgtaccattg gaaaaaaact
     7381 ccatcaactt taaggtacac actattctca aaaatgttaa aacgtgtacc ttaggataga
     7441 ggaacgacag caattcgatg ccacatatcc tgtccctcat gcacaaaatc aagcaactat
     7501 tcttatttcc caaagttaac tctgggcaac tggcaccaga cagcctctga tcttgaaaga
     7561 catgaagcac agctgaggga aaggtgaggt tcaatgctga aaagaaggga taaagtgaaa
     7621 ataaactgag cagtatgatt cccagtccca cttccctatg tagttcccat tctctcttct
     7681 tttgggattc caattgcaca tgttagactg ctcaaaattg tcccacagct attagtgctg
     7741 ttatgattac tttctactct gtttttgtat ttcagttcgg gtaatttcta tgaacccatt
     7801 ttctagttaa ccaattcttt ccttgagctt tttgttttta tttctagcat ttctaattta
     7861 cagtttccat ttctctactg acattccccc aatctgctca tgcacatatt atccgtattt
     7921 tacacaaggc atattaccta tagttatttt aaataccttt tctggtgttt ctaatatctg
     7981 ggtcatctct gagtctgggt cattctgtat cttgtgtctt gacattgttt tctttttcct
     8041 tgttttgtgt gtgtgtgtgt gtgtctcatt ttttgattga tttgcatgcc atatgttgat
     8101 atagaacagt agtgactgaa gtaaatgata tgcctggaaa tgggcatgcc tcttccacta
     8161 ggggttagag tgtgacattg taaactctcg tcaggagttt aactggtttg ggtttgttat
     8221 tgctatgaca agtgcaccac tgacttcaaa ttcctctagc gtggtgctag cgtttttagt
     8281 tttgtttgtt tttcagtgtt cctgctctat cgtcagttta tagccttcct catgcacttg
     8341 tgcctcataa ggggtctatc tccaacccct cgcccctctg cagcaataga ctgttgttgc
     8401 ttgttacttg ttgcttgttt gacttgatgc aggctgaggg taatgtaaaa ctacatcaat
     8461 tatatttgac tttacaatcc attacagaaa gtgttatcca cctttgtttc tcaaccccca
     8521 gcaagttcct ggcaatatgg tcagcattcc acattcttat taaatgactt acggctacca
     8581 ggcactgtat attgtatagc acctgaagtc tctctaaaca caatgtcagt gtttaacact
     8641 tgttgactca tggtttaggg gaggcagaag aataactgaa ttccagatag ggatcagaag
     8701 atttggttta taattctgac ttgccgaaaa ctcgaagtga ccttgggtaa accactgaac
     8761 ctttgttgtg ttctttttct cacaggacaa acatgagggg ttgacctcta actcagaaat
     8821 tataactcca aaattctgtg aaccaaacag taaattcttt gatttatgag taactattta
     8881 aagactgttt caaaagctcc acaagagggc agctcctcca cattgcttaa ggtctgaaga
     8941 gaattcagcg tgcttttaag tctatttaaa aactcaccct agtatacaat gttttacttt
     9001 tgtttctttt aattatacaa gtagggcaca aaatatattg ttataaaaat tccaacatta
     9061 cagaccaact tcaagtctct tttgattaat acccccaatc ctaatcttcc ctattgtccg
     9121 attggtgggt atttttttct gaagctt
//
LOCUS       XM_032611875            6405 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus exonuclease 1 (EXO1), transcript variant
            X4, mRNA.
ACCESSION   XM_032611875
VERSION     XM_032611875.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6405
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6405
                     /gene="EXO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116743449"
     CDS             81..2411
                     /gene="EXO1"
                     /codon_start=1
                     /product="exonuclease 1 isoform X4"
                     /protein_id="XP_032467766.1"
                     /db_xref="GeneID:116743449"
                     /translation="MKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKG
                     KQLLREGKVSEARECFTRSINITHAMAHNVIKAARSQGVDCLVAPYEADAQLAYLNKA
                     GIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEEKFRYMC
                     ILSGCDYLSSLRGIGLAKACKVLRLANNPDILKVIKKIGHYLKMNITVPEDYIKGFIR
                     ANNTFLYQLVFDPIKRKLIPLNAYEDDIDPETLSYAGRYVDDSIALQIALGNKDINTF
                     EQIDDYNPDTAVPAQSRSHSWTDKTCQKSSNINSIWNRSYCPRLELDIVSDATKVKEN
                     PSTVGIELVISTKGLNLPRKSSIAKRPRSEELSEDDLFGQYSTSFTKKIKKNSCEGDK
                     LLNSSERFMPDLVDGNTIKKSLSTPPRTRNKFATFLQRKNEESGAVVVPGTRSRFFSN
                     SLGSADCISKKASSQSLDETAVTDKEANVNESDCLDGKKLLDISVAHNSSEHIPDDVT
                     VIAEESQSFKTSRFTRTISPPTSGTLRSCFSWSGSLGEFSRTPSPSPSTALQQFLRNS
                     DSAICLPENNEPSDVSQLKSDESSDESHPLHEVDWSSQSQESMDLSPHNLNASKLSQP
                     SSKDLDSEESDCNFKSLDNQGNQKSKLYLFHFSKKGTLLRNKVPGLYKSSSVDSLSTT
                     KIKPLVPARVSGLSKKPSSIHKRNHHNAENKPELQIKINELWKNFVFKKDSEKLPSCK
                     KPDPLSPVKDNIQLTPEEEDIFNNSDCMRVQRAIFQ"
     misc_feature    <81..506
                     /gene="EXO1"
                     /note="FEN-like PIN domains of Exonuclease-1, a
                     structure-specific, divalent-metal-ion dependent, 5'
                     nuclease and homologs; Region: PIN_EXO1; cd09857"
                     /db_xref="CDD:350207"
     misc_feature    order(153..230,234..284)
                     /gene="EXO1"
                     /note="helical arch; other site"
                     /db_xref="CDD:350207"
     misc_feature    540..770
                     /gene="EXO1"
                     /note="H3TH domain of Exonuclease-1, a structure-specific,
                     divalent-metal-ion dependent, 5' nuclease; Region:
                     H3TH_EXO1; cd09908"
                     /db_xref="CDD:188628"
     misc_feature    order(567..584,588..605,609..620)
                     /gene="EXO1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:188628"
     misc_feature    576..578
                     /gene="EXO1"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:188628"
ORIGIN      
        1 gctgtggata catactgctg gcttcacaaa ggagctgtag cttgtgctga aaaactagcc
       61 aaaggtatgt aggattttgt atgaaatttg taaatatgtt actatctcat gggatcaagc
      121 ctatcctggt atttgatgga tgtactttac cttctaaaaa ggaagtggag aagtctagaa
      181 gagaaagaag acaagccaat cttcttaagg gaaagcagct tcttcgtgag gggaaggtct
      241 cagaagccag agaatgtttc acccgttcta tcaatatcac acacgctatg gcccacaacg
      301 taattaaggc tgctcggtct cagggagtag attgtcttgt ggctccatat gaagcagatg
      361 cacagttggc ctatcttaac aaggctggta ttgtacaagc tgtaattaca gaagactctg
      421 atctcctcgc ttttggctgt aaaaaggtta ttttaaaaat ggaccagttt ggaaatggac
      481 tagaagttga tcaggctcgg ctaggaatgt gcaaacagct tggggatgtg ttcacagaag
      541 agaagttccg ttatatgtgc attctttcag gctgtgacta tctctcatca ctgcgtggga
      601 ttggattagc caaggcctgc aaagtactaa gactagccaa taatccagat attttaaagg
      661 ttatcaagaa aattggacat tatctcaaga tgaatataac agtaccagaa gattacatca
      721 aaggctttat tcgggccaat aataccttcc tctatcagct agtttttgat cccatcaaaa
      781 ggaaactcat ccctttgaat gcctatgaag acgacattga tcctgaaaca ctaagctatg
      841 ctgggcgata tgttgatgat tctatagctc ttcaaatagc acttggaaat aaagatataa
      901 atactttcga acagattgat gactacaatc cagacactgc cgtgcctgcc caatcaagaa
      961 gtcatagttg gactgacaaa acatgtcaaa agtcatctaa tattaatagc atttggaata
     1021 ggagctattg ccctagactt gagctggaca ttgtttcaga tgctacaaag gtgaaggaaa
     1081 atccaagtac tgtgggcatt gaactagtga ttagtactaa aggattaaat cttccaagga
     1141 agtcatccat tgcaaaaagg ccaagaagtg aagagctatc agaagatgat ctatttggtc
     1201 agtattctac ttcctttaca aagaagatca agaaaaatag ttgtgaaggt gataaattat
     1261 tgaactcttc tgaacgattt atgcctgacc tggtagatgg aaatactatt aaaaaaagct
     1321 taagcacacc acctaggacg agaaacaaat ttgcaacatt tttacagaga aaaaatgaag
     1381 aaagtggtgc agttgtggtt ccaggaacca gaagcaggtt tttttccaat tctctgggtt
     1441 ctgctgactg tatatcaaag aaagcaagca gccagtctct agatgaaact gctgtcacag
     1501 ataaagaagc taatgtaaat gaatcagatt gtctagatgg caagaagttg ttagatatca
     1561 gtgtagcaca taattcaagt gagcatattc cagatgatgt gactgtgatt gctgaagagt
     1621 ctcagtcttt taagaccagc agattcacga ggaccatctc accacccacc tcgggtacac
     1681 taagaagttg tttcagttgg tctggaagtc ttggagagtt ttcaagaaca ccaagcccct
     1741 ctccaagcac agcattgcag cagttcctta gaaatagtga ttctgccatc tgtctgcctg
     1801 agaataatga gccgtctgat gtatctcagt taaagagtga tgagtcaagt gatgaatctc
     1861 atcccttaca tgaagtggat tggtcttcac agtctcagga aagcatggac ttatcaccac
     1921 acaatttaaa tgcatcaaaa ctttctcagc cttctagtaa ggatttagat tcagaggaat
     1981 ctgattgcaa ttttaagtca cttgataatc aaggtaatca gaaatccaag ctatacttat
     2041 ttcatttttc gaaaaaaggc acgcttctaa ggaacaaggt tcctgggctg tataaatcta
     2101 gttctgtgga cagtctttct acaaccaaga tcaaaccttt agtacctgcc agagtcagtg
     2161 ggctgagcaa gaagccatca agcatccata agagaaatca tcataatgcc gagaacaagc
     2221 cagaattgca gataaaaatc aatgaactct ggaaaaattt tgtatttaaa aaagattctg
     2281 aaaagcttcc ttcttgtaag aagccagatc ccctgtctcc agtcaaagat aacatccagc
     2341 taactccaga agaagaggat atatttaaca attctgactg tatgcgtgtt cagagagcaa
     2401 tattccaata aacacaggaa gctgggaggc tattgcctgc aagagaatct ctatcaattt
     2461 catgtcctgt ttgagaatga agcagttatc agtatgaaag acttgttctt agatctatgc
     2521 tatttatttt taaatagagt acattttgta tattaactat gtaactgttt ttgttcagct
     2581 tattatattt tcataagaag ctaactagag aaataatttt ggttttgaca ggtttttgaa
     2641 gttttaatgt taattgagca agtcccttgg aacttacaaa aatctactct aaagatttct
     2701 gtaatgttgt caagtacaag gatggtaaat ggaaaaccac aattctgtgg tcattttgta
     2761 ctagaggaaa ttactgtgtt tctttgagct atagtttttt cacctgcctt tcctgtctgt
     2821 ctttcagggt tgaattggat atacagttgc tgggatggga ggggtagttg gaagggttaa
     2881 agatcattgc ataaatgggg cagtgctcta ttttccctga agagtttggt tgggttacag
     2941 attgacagta aaagaaaatt ggtttcagca tcatatgaaa ggcactactt cttatatcat
     3001 taatattctt aaacttcaaa atagcctatt tctcttatat gtcttttttg aagtgtgggt
     3061 taaaaattcc ctaacgtata tttaaaacta gtatcctagg tgcaatgtaa aatatgaaag
     3121 ctgcagggtc tgtgatgtgt acatactctg caaagaaata gattctcgga aagaaaacca
     3181 gatatgcaag tgaagatctg aagtaaggaa gtgaagtaag tgacaatctg acaggaagta
     3241 aaggaattgt aaaagtgtct gatatagagg ataaaggaaa gggatccaga gcattttaat
     3301 ttttaaatga gacttaatag aggaggtcag agtggaacaa aaaacataac attgtaagaa
     3361 acagcataaa aatgttagaa ggggaaaaaa aattttttta aaatctggaa aagatcaaat
     3421 acaaagaaca aaagcaaatt tgaactttct ggaatgtttc ctgttataga acaaattaag
     3481 aaagggaaga tggtagcagt gctgtagttt gtcaatctct gaaccgtcgc atagcagcaa
     3541 ctggatagca aagtcaaaat actaatgaac aacattacaa caaatttaga tggcatcata
     3601 tacttaaatc ctgaaatata agtgggtgaa gacaagctac cgaaagccac aagaccacaa
     3661 agtggtactg gcgtctattt gggagaagta gagcatggca atagggcatc taatggacct
     3721 gagaacagaa cttaaataga atgattgttg aaacacatag caggccaagt tgcaaacagc
     3781 catttgaaac tgggagatgc tttgagcatt ccagtggtga gtgagtgcag gagacctaca
     3841 gtaatgtctg aaggaatgaa gcaatgtagt ccatatgaac ttttgaaatg atttgccata
     3901 tttgtcaagg ctccacagaa gagaaactgc tggctgtaaa accaaaattg agcaggagag
     3961 tgacaatagg cacaaaggaa gataaggtta aatacagtga agggaggaat tgttgaccaa
     4021 gaaatctcag cagaatgctg tttttgtttt tgaacactga aaacaaaaac aaaaaccacc
     4081 aacaacaaaa cagctgaggt ttgagaaggc ctcatgaccc atgcctcctc aaagttaaag
     4141 aaaattattt ttacttaaaa agaaaccaca tagggcttcc ctggtggcac agtggttgac
     4201 agtccgcctg ccgatgcagg ggacacgggt tcgtgccccg gtccgggaag atcccacatg
     4261 tcgcggagca gctgggcccg tgagccaaaa gaaaccacat aaaagttttt agatcaatcc
     4321 cttacaaaat tgatttaaag gagtcaagag cagaataacg tctttacaaa taatgaaaat
     4381 ctaccagaaa ggtcctgaga gcagatcaaa accagtctat ttcaaaatgt gctagaagtt
     4441 attaagaaaa tagtgtagga tacgaaggaa atttagaatt ggaaaaactc agaagaaaaa
     4501 taaaaaagat aagctcagga aaggattaga aaaaaatttc ggaaattaag gctaaactag
     4561 aaggaacaca agcaaataaa catacagata gacgatgcct taaaagaaat aggtaaaaat
     4621 caaaacaaaa tggaaaaaga acactttaaa agagtaggaa gtgacagatg ttgaagatga
     4681 ggcagaaggt ccaatataca gataatagga gtctctgaag aaaaaaaacc ctattttcag
     4741 aaaacgttaa tttttaaaag atttgaagct attttttaaa tgcactatta tacccaagat
     4801 tattgatccc aaactgccaa caccaagaca taagtgacaa caagttactt taaagaaagg
     4861 aaaaatcctc tgggtaggca agaacagcaa gtgacatgta aggaaaaaaa aagatgatca
     4921 tcacactttt ccacaattat tctttataca tgaagaaaat ggagtaactt gttaaagata
     4981 ttcaagggaa aatgtaagca aaggctttta tattcaacaa aatcaacttt caattataaa
     5041 gggcacaaac ttatccatcg aacaagaatt tggaaaatac tgctcactaa gctcttcctg
     5101 aggaatcaga aaataactga aatagaaaaa cagcactata aagattggtg gtgaccatca
     5161 aacatagtga cttgtacaat taaaaatttg ggagctaaag gggagagtat gatatgcaat
     5221 ggctgtatgt ccagatgaca caggtagtat aactacagag gagagaccat atgcaaaaca
     5281 tttggtttag ctcgtagtag tagtctgata ttgttatttt aggaccattc tgcatataat
     5341 gtgggatagt ataaatgaat atttatggga tattttaatt catccccaat tttcttgaga
     5401 accagaattt ttaatgtcta gagaaaggag atacagataa aatacagaac aggttaattt
     5461 ttttttaatg tagttataaa cttgggagta ctgatagaga cttatgaatg tatatacaca
     5521 catactatat atatacatgt atatgcatat atatatatac acactgaaga gacccagaaa
     5581 aaaaatccag taccaatgag catccctatc actcaacttg tagtcttaaa atacaatttt
     5641 tcaccaaaag aaatgagagc ttcttggaaa aatagtctgg aaaagaagtg taaaggacaa
     5701 gcctgggata tcttgttaaa acagaagcct ttactgacta ctaatgtaat ttcaaaatga
     5761 ttgaggagac acctgaagag gcccccactg tccaaacatg ggagaatttg atcttgaaaa
     5821 gataattgtt tactggaacc catcataagc attttaaaaa attggtcacc ttcagaggat
     5881 gatagaatat caattcatta tcttgaatat gggaaaataa aagaaatatc aggcattttc
     5941 cctgtctgta ctgtaccaat gggtaataaa acaagataaa tctcttttta ctgttctaat
     6001 aatgaaaaag ataatatcac cattttgcaa cccccggtgg attaatggat ttaggctttg
     6061 agcatcagct gctattaaca tcataaccag acattttttg tctcataatg aaagaactca
     6121 gcatcctctg tagtcttgcc aagggattgg agatgagtct gatcattcct ctggatccag
     6181 ctgccgaatt gcaggaaata cagaggacag aggaacatgt gggactgcaa catgagtgtg
     6241 caattagcaa aatccagtct gcaagaaact acaggttaaa tgcccttgga ttctcaacag
     6301 ataaattgta aggaagggga tggagaggag aattccatat taaaaaaagg acagggcttc
     6361 cctggtggtg cagtggttga gagtccgctt gttgatgcag gggac
//
LOCUS       XM_032611887            1301 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf210 homolog
            (C1H1orf210), transcript variant X1, mRNA.
ACCESSION   XM_032611887
VERSION     XM_032611887.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1301
                     /gene="C1H1orf210"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743465"
     CDS             358..696
                     /gene="C1H1orf210"
                     /codon_start=1
                     /product="type III endosome membrane protein TEMP"
                     /protein_id="XP_032467778.1"
                     /db_xref="GeneID:116743465"
                     /translation="MSEANQTTVEPSELPTASAVSPGLGSGARAWPVLVGVVLGAVVL
                     SLLIALAAKCHLCRKYRASYQHRPLSGTVKGVCPEVGEDDDDGFIEDNYIHPGVGGLG
                     TEASRDHFSL"
     misc_feature    403..645
                     /gene="C1H1orf210"
                     /note="Leucine-rich repeat family 19 TM domain; Region:
                     LRR19-TM; pfam15176"
                     /db_xref="CDD:464545"
ORIGIN      
        1 acaaacatgt acggagcagc tgactactaa gctctctgcc agcgccagga cgcacgttat
       61 tcagcccagt ccctgaccag ggagctgccc atctagtaac tggccagttc tgactggtgg
      121 ctgactgggc agggcagtga agggggtgat gagaggggcc ctgggacaac ctcacagtca
      181 ggtgctttcc tagcctggac actcctccca ggtcctcctc tgattcagat acctccagcc
      241 ccagctgttc ctcctccagg actctgtgcc ctggggctgc ctggcatctg ggagtctcct
      301 tagagccagg gctgttctgg cagaggctga ggctcaccag tgtcttccgg cccctcaatg
      361 agtgaggcaa accaaaccac tgtggagccc tcagagctcc ccacagcatc ggccgtatcc
      421 cctggactgg gcagcggggc ccgggcatgg cctgtgctgg taggggtcgt gctgggggct
      481 gtggtccttt ctctcctcat cgcacttgct gccaaatgcc acctctgccg caaataccgt
      541 gccagctacc agcaccgccc gctgtctggg acagtgaaag gggtctgccc cgaggtgggt
      601 gaagatgatg atgatggttt catcgaggac aattacattc accctggggt tggtgggctg
      661 gggacggagg ccagtaggga ccacttctcc ctctgagccc tcatcttcag acccccccca
      721 cccctgtgcc cgacagctta aggacagcag atactttgtg ggaaccacaa gcctcaggga
      781 cttggtggct agggcttaag ggcggagcag gggtagatca atcccccctt ccttgacact
      841 agccaccaaa gtgaaacacc ctctcttgct cagtaaccct caatggctcc ctcttgttct
      901 tgggataaag cctaccaagg ccctggctgt gaaatcaggt ctctgtcagc ctttggcttc
      961 ctttcctgcc tttcccgact ttactccctg cttaaccaat tatttgttat tcctccccca
     1021 cctaccatgc tgcttctcca tggacctttg ctcacattct tcccttgtct ccctgccctt
     1081 ctcttctccc aagtccttta tgacagtgat gagaatccct ggccagtaga ccccatgtgg
     1141 gctgcctacc tgccagcatt tcacatgtgc ccaggtgaaa atcattgtgc caagtttctc
     1201 agggagattt ttttcctatc aatcaagtgg taatctaaat agttataata tattatgttt
     1261 ttcacagata ctaataaatc tattttcatt ttaaataaaa a
//
LOCUS       XM_032611894            1202 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf210 homolog
            (C1H1orf210), transcript variant X2, mRNA.
ACCESSION   XM_032611894
VERSION     XM_032611894.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1202
                     /gene="C1H1orf210"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743465"
     CDS             259..597
                     /gene="C1H1orf210"
                     /codon_start=1
                     /product="type III endosome membrane protein TEMP"
                     /protein_id="XP_032467785.1"
                     /db_xref="GeneID:116743465"
                     /translation="MSEANQTTVEPSELPTASAVSPGLGSGARAWPVLVGVVLGAVVL
                     SLLIALAAKCHLCRKYRASYQHRPLSGTVKGVCPEVGEDDDDGFIEDNYIHPGVGGLG
                     TEASRDHFSL"
     misc_feature    304..546
                     /gene="C1H1orf210"
                     /note="Leucine-rich repeat family 19 TM domain; Region:
                     LRR19-TM; pfam15176"
                     /db_xref="CDD:464545"
ORIGIN      
        1 tgcagttctg gcccgcccac ctggccgggt cctgccggct ctaactggaa gctcctccgc
       61 ggactgtgca cagttcctac aggtgctttc ctagcctgga cactcctccc aggtcctcct
      121 ctgattcaga tacctccagc cccagctgtt cctcctccag gactctgtgc cctggggctg
      181 cctggcatct gggagtctcc ttagagccag ggctgttctg gcagaggctg aggctcacca
      241 gtgtcttccg gcccctcaat gagtgaggca aaccaaacca ctgtggagcc ctcagagctc
      301 cccacagcat cggccgtatc ccctggactg ggcagcgggg cccgggcatg gcctgtgctg
      361 gtaggggtcg tgctgggggc tgtggtcctt tctctcctca tcgcacttgc tgccaaatgc
      421 cacctctgcc gcaaataccg tgccagctac cagcaccgcc cgctgtctgg gacagtgaaa
      481 ggggtctgcc ccgaggtggg tgaagatgat gatgatggtt tcatcgagga caattacatt
      541 caccctgggg ttggtgggct ggggacggag gccagtaggg accacttctc cctctgagcc
      601 ctcatcttca gacccccccc acccctgtgc ccgacagctt aaggacagca gatactttgt
      661 gggaaccaca agcctcaggg acttggtggc tagggcttaa gggcggagca ggggtagatc
      721 aatcccccct tccttgacac tagccaccaa agtgaaacac cctctcttgc tcagtaaccc
      781 tcaatggctc cctcttgttc ttgggataaa gcctaccaag gccctggctg tgaaatcagg
      841 tctctgtcag cctttggctt cctttcctgc ctttcccgac tttactccct gcttaaccaa
      901 ttatttgtta ttcctccccc acctaccatg ctgcttctcc atggaccttt gctcacattc
      961 ttcccttgtc tccctgccct tctcttctcc caagtccttt atgacagtga tgagaatccc
     1021 tggccagtag accccatgtg ggctgcctac ctgccagcat ttcacatgtg cccaggtgaa
     1081 aatcattgtg ccaagtttct cagggagatt tttttcctat caatcaagtg gtaatctaaa
     1141 tagttataat atattatgtt tttcacagat actaataaat ctattttcat tttaaataaa
     1201 aa
//
LOCUS       XM_032611902            1371 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf210 homolog
            (C1H1orf210), transcript variant X3, mRNA.
ACCESSION   XM_032611902
VERSION     XM_032611902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1371
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1371
                     /gene="C1H1orf210"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743465"
     CDS             428..766
                     /gene="C1H1orf210"
                     /codon_start=1
                     /product="type III endosome membrane protein TEMP"
                     /protein_id="XP_032467793.1"
                     /db_xref="GeneID:116743465"
                     /translation="MSEANQTTVEPSELPTASAVSPGLGSGARAWPVLVGVVLGAVVL
                     SLLIALAAKCHLCRKYRASYQHRPLSGTVKGVCPEVGEDDDDGFIEDNYIHPGVGGLG
                     TEASRDHFSL"
     misc_feature    473..715
                     /gene="C1H1orf210"
                     /note="Leucine-rich repeat family 19 TM domain; Region:
                     LRR19-TM; pfam15176"
                     /db_xref="CDD:464545"
ORIGIN      
        1 caccggaaat tcacttgttt atcagggccg ccagcttgag cgtctgcctg ctgaagactg
       61 ccccctctct ggatcccagc ggcactaaac ccccaaccgc ccccgccccc ggcactgagg
      121 gtgggggtga ggcctgcgcc agaatgttct ctgcaattct tgggaaggtg tagcataagt
      181 cctccctatt ggaggctctg ctctccgccc tcatctgcgg cttcggcccc gcctggctgc
      241 tgcgtccaca ggtgctttcc tagcctggac actcctccca ggtcctcctc tgattcagat
      301 acctccagcc ccagctgttc ctcctccagg actctgtgcc ctggggctgc ctggcatctg
      361 ggagtctcct tagagccagg gctgttctgg cagaggctga ggctcaccag tgtcttccgg
      421 cccctcaatg agtgaggcaa accaaaccac tgtggagccc tcagagctcc ccacagcatc
      481 ggccgtatcc cctggactgg gcagcggggc ccgggcatgg cctgtgctgg taggggtcgt
      541 gctgggggct gtggtccttt ctctcctcat cgcacttgct gccaaatgcc acctctgccg
      601 caaataccgt gccagctacc agcaccgccc gctgtctggg acagtgaaag gggtctgccc
      661 cgaggtgggt gaagatgatg atgatggttt catcgaggac aattacattc accctggggt
      721 tggtgggctg gggacggagg ccagtaggga ccacttctcc ctctgagccc tcatcttcag
      781 acccccccca cccctgtgcc cgacagctta aggacagcag atactttgtg ggaaccacaa
      841 gcctcaggga cttggtggct agggcttaag ggcggagcag gggtagatca atcccccctt
      901 ccttgacact agccaccaaa gtgaaacacc ctctcttgct cagtaaccct caatggctcc
      961 ctcttgttct tgggataaag cctaccaagg ccctggctgt gaaatcaggt ctctgtcagc
     1021 ctttggcttc ctttcctgcc tttcccgact ttactccctg cttaaccaat tatttgttat
     1081 tcctccccca cctaccatgc tgcttctcca tggacctttg ctcacattct tcccttgtct
     1141 ccctgccctt ctcttctccc aagtccttta tgacagtgat gagaatccct ggccagtaga
     1201 ccccatgtgg gctgcctacc tgccagcatt tcacatgtgc ccaggtgaaa atcattgtgc
     1261 caagtttctc agggagattt ttttcctatc aatcaagtgg taatctaaat agttataata
     1321 tattatgttt ttcacagata ctaataaatc tattttcatt ttaaataaaa a
//
LOCUS       XM_032611916            1918 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hypoxanthine-guanine
            phosphoribosyltransferase-like (LOC116743479), mRNA.
ACCESSION   XM_032611916
VERSION     XM_032611916.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1918
                     /gene="LOC116743479"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 45 Proteins, and 91% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743479"
     CDS             1163..1819
                     /gene="LOC116743479"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:1379..1381,aa:OTHER)
                     /transl_except=(pos:1391..1393,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: hypoxanthine-guanine
                     phosphoribosyltransferase-like"
                     /protein_id="XP_032467807.1"
                     /db_xref="GeneID:116743479"
                     /translation="MVTCSPTVMISDNEPGYDLDLFCVPNHYAEDLEKVFIPRGLIMD
                     RTEQLARDVMEEMGGRHIVALCVLNGGLXILCXPADYIKALNRNSDRSIPMMVDFIRL
                     KSYCNDQSTGDIKVIGGDDLSTLTGKNILIIEGIIDTDKTVQTLLPLVEQHNPKMVKV
                     ASLLVKRTPQSVGYRPDFVAFEIPGKSVVGYALDYNEYFRNLNHVRVISETRKAKYKA
                     "
     misc_feature    1178..1816
                     /gene="LOC116743479"
                     /note="Phosphoribosyl transferase (PRT)-type I domain;
                     Region: PRTases_typeI; cl00309"
                     /db_xref="CDD:444823"
     misc_feature    order(1364..1366,1370..1372,1562..1570,1574..1588,
                     1658..1660)
                     /gene="LOC116743479"
                     /note="active site"
                     /db_xref="CDD:206754"
ORIGIN      
        1 ggcaggagca gggaggttcc ctctgaggaa ggaggagggt caggtgagtg ataggagcct
       61 taaggagttt tcttcgcatg gcttctgttt ttgcagagaa ataggaagca gtgtcatcag
      121 ctgagagtga agagcgggga gcggatgctg gggtttgagg agagaagaga aggtgtaagt
      181 tcaccatcct ggggctttgg agagaggatg gagtgtggta ggcttcccag gcagcatcag
      241 gacccccttg aggtgggcgg catgaattta aagtgatagc aggaagggtg gctgagtgtt
      301 ttgttttcca gccactccag gtgtgcaggt ggggagaaga tggagcctgg aatttaatca
      361 ggattggggc cttgccaggc aagtctgata aagccagaga ggggcaagga gctgtaggca
      421 aggcagtggt tgacgtgatg gcccagacaa tcaggccagg taaagaggga agtgaggatg
      481 gggtcgggga ggggtgagga accctgaaaa agtggtagga ctgatagatg ttaggagcga
      541 ttaccgacgt actagagaaa gttgaaaaca tagaaggtgg tgggcagatg acagcatata
      601 gaaatggagg ttacccaggg gatacagaca agccctagga cgtgaaccat ggagtggtcc
      661 tgaggtaggg tttacagacc agtggtggtt ttactattat cagaaacata tcaactcaac
      721 ctgctgaatc agaggtccaa tgattatgtg ctaacagctc tatgagtaca tggcagaggc
      781 agaatttgaa cccaggtctt ctgcctctag gtccagcacg tttccagatg catccccact
      841 gctcctatga gtaacactgt caaggtgttc cattcctcac agtcatttga agtgacagat
      901 agcaatcact gcttttcaaa gatttgctta tatttcccaa aggaggctcg gggtgctgct
      961 actagaagaa ccaggaatga atgctgagca agcaaaagaa tgaggtgtcc cagtccccag
     1021 cctgcaccta cttcctcctc cacctcaccc aacccctccc tgtggcagac ccagggctct
     1081 tagccttggg gtagttgcgt cccctttaag aagctgatga gagccccgac tgccctcagc
     1141 ccatacacca gccagctccg ttatggtgac ctgcagcccc accgtcatga ttagtgataa
     1201 tgaaccaggt tatgacctgg atttattttg tgtacctaat cattatgctg aggatttgga
     1261 aaaggtgttt attcctcgtg gactaattat ggacaggact gaacagcttg ctcgagatgt
     1321 gatggaggag atgggaggcc gtcacatcgt ggccctttgt gtgctcaacg gggggctata
     1381 aattctttgc tgacctgctg attacatcaa agcactgaac agaaatagcg atagatccat
     1441 tcctatgatg gtagacttta tcagactgaa gagctactgt aatgaccagt caacaggtga
     1501 cataaaagta attggtggag atgatctctc aactttgact ggaaagaata tcttgattat
     1561 tgaaggtatc attgacactg acaaaacagt gcaaaccttg cttcccttgg tcgaacagca
     1621 taatccaaag atggtcaagg ttgcaagttt gctggtgaaa aggacgcctc aaagtgttgg
     1681 atatagacca gactttgttg catttgaaat tccaggcaag tctgttgtag gatatgccct
     1741 tgactataat gaatacttca ggaatttgaa tcatgttcgt gtcatcagtg aaactagaaa
     1801 agcaaaatac aaagcctgag agttcaagtt gagtttagaa acatctggag tcccattgaa
     1861 atcaccagta aaattatcaa atgttctagt tctgtggcca gctgcttagt agagctta
//
LOCUS       XR_004346793             417 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743485
            (LOC116743485), ncRNA.
ACCESSION   XR_004346793
VERSION     XR_004346793.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..417
                     /gene="LOC116743485"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116743485"
     ncRNA           1..417
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743485"
                     /product="uncharacterized LOC116743485"
                     /db_xref="GeneID:116743485"
ORIGIN      
        1 agtccagagt tgaagaggga ccgcctgtgt aggcggccgg ccggaaccag acgggaggtg
       61 ggtaggcatt ctccaggcaa agccagaggg accaagaaga cgcaaaactg cctgcaagag
      121 tccaacagca ggcttcttac tagcaacatt ctaactgaag gtgactaaaa tctggcattt
      181 ggaaagtaaa atggcttgaa gactactaaa gatctctgct tcagagttac actaggaggc
      241 ctggctgccc tgaacccctg gcgacctggc aaaactcctg tatgtgccaa gagctggaat
      301 tcccactatt tgcaggaagg cggctttcat agcagtgaat tatcagcctt gtgtggagtt
      361 agtcatgctg ctatgcttac ttttttaaaa aataaattac ctttagctct atcatta
//
LOCUS       XM_032611938            2799 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus collagen type IX alpha 2 chain (COL9A2),
            mRNA.
ACCESSION   XM_032611938
VERSION     XM_032611938.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2799
                     /gene="COL9A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743487"
     CDS             143..2218
                     /gene="COL9A2"
                     /codon_start=1
                     /product="collagen alpha-2(IX) chain"
                     /protein_id="XP_032467829.1"
                     /db_xref="GeneID:116743487"
                     /translation="MAPAAARRSLLVLLQVLGLAVAQIRGPPGERGPPGPPGPPGPPG
                     VPGSDGIDGDKGPPGKAGPPGPKGEPGKAGPDGPAGKPGIDGLTGAKGEPGPMGIPGV
                     KGQPGLPGPPGLPGPGFAGPPGPAGPVGLPGEMGLTGPKGDPGPEGPAGPPGPPGKPG
                     RPGTIQGLEGSADFLCPTNCPAGVKGPPGLQGVKGHPGKRGHLGDTGRQGKPGPKGDV
                     GASGEQGIPGPPGPQGVRGYPGMAGPKGEMGPQGYKGMVGSIGAAGSPGEEGPQGPPG
                     RAGEKGDVGSQGIRGLQGITGPKGATGPPGIDGKDGTPGTPGTKGSAGQVGRPGNPGH
                     QGLVGVPGQPGTKGGPGDKGEPGRQGFPGVSGSPGKEGEPGPRGEIGPPGIMGQKGDH
                     GERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGIKGDKGFPGKTGPRGGVGDPGVAG
                     LPGEKGEKGESGEPGPKGQQGVRGEAGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGL
                     PGQPGRQGVAGRDASDQHIEDVVLKMLQEQLAEIAVSAKREALGATGMMGLPGPPGPP
                     GYPGKQGPIGHPGPRGIPGIVGAVGQIGNTGPKGKRGEKGDRGEVGRGHPGMPGPPGI
                     PGLPGRSGQAINGKDGDRGVAGAPGEAGRPGLPGPMGLPGFCEPAACLGASAYTSARL
                     TEPGSIKGP"
     misc_feature    <746..>1543
                     /gene="COL9A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    <1310..>2134
                     /gene="COL9A2"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
ORIGIN      
        1 gtgggtattc acaggatggc tgatccagga agggaggccg gacccgcccc gtccgagagc
       61 agctagcgcg gccgcgccgg agcctcagcg gtcggtgcgt gcgtggagcc ggcacccatc
      121 ctccttgagt ccgcctcccg ccatggcccc tgcggccgcc cgccgcagcc tccttgttct
      181 cctgcaggtg ctcgggctcg ccgtggcgca gatcagaggt ccaccaggag agcgggggcc
      241 cccggggccc ccggggccac cggggccacc gggagtgcct ggatccgacg gaatcgacgg
      301 tgacaagggg ccccctggga aagctggccc tccgggacct aagggagagc ctggcaaagc
      361 ggggccagat gggccagccg gcaagcccgg gattgatggt ctaactggag ccaaggggga
      421 gcctggtccc atggggatcc ctggagtcaa gggccagcct gggctcccag gtccccccgg
      481 cctgccgggc cctggcttcg ccggacctcc cggaccagcc ggacctgttg gcctccctgg
      541 tgagatggga ctcacgggcc ccaaggggga tcctggacca gagggaccag cagggccccc
      601 agggccccct gggaaaccgg gccgcccagg aaccattcag ggtctggaag gcagcgcgga
      661 cttcctgtgt ccaaccaact gtccagcggg cgtgaaaggg cccccggggc tgcagggagt
      721 gaaggggcat cctggcaagc gcgggcatct gggagatacc ggccgccagg ggaagccggg
      781 tcccaaggga gatgtgggtg cctctggaga gcaaggcatc cctggaccgc cgggtcccca
      841 gggcgtcagg ggctacccgg gcatggcggg acccaaagga gagatgggtc ctcaagggta
      901 caaaggcatg gtgggctcca tcggcgccgc cgggtcacca ggtgaggaag gtcctcaggg
      961 gccaccaggc cgagctgggg agaagggtga cgtgggcagc caaggtatcc gaggactcca
     1021 gggaataaca ggcccgaagg gagcaaccgg cccaccaggc attgacggca aggacgggac
     1081 cccaggcaca cctggcacga agggcagtgc aggacaggtg gggcggccag gaaacccggg
     1141 ccaccagggc ctagtgggtg tgcccggcca gcctgggaca aaaggaggcc ctggagacaa
     1201 gggtgagcca ggccggcaag gcttcccagg agtctctggt tcccccggga aggagggaga
     1261 gccagggcct cgaggagaaa tcggtccccc gggcatcatg gggcagaagg gtgaccacgg
     1321 tgagaggggg ccagtggggc agccaggccc tcaaggccga caaggcccca agggggaaca
     1381 gggtcccccc ggaattccag ggccccaagg cttgccaggc atcaagggag acaagggctt
     1441 cccagggaag accgggcccc gcggcggagt gggcgatccg ggggtggctg gcctcccagg
     1501 agagaaaggc gagaagggcg agtctggcga gccggggccc aagggacagc aaggagtccg
     1561 cggagaagcc ggctatccgg gccccagcgg ggatgcaggc gccccggggg tgcagggcta
     1621 ccccgggccc ccgggccctc gaggactggc tggaaaccga gggttgcccg gacagcccgg
     1681 gaggcagggc gtggcgggcc gagacgccag tgaccagcac attgaggatg tggtgctgaa
     1741 gatgctgcag gagcaactag cagagatagc tgtgagtgcc aagcgggagg ctctgggtgc
     1801 gactgggatg atgggtctcc caggaccccc tgggcctcct gggtacccag gcaaacaggg
     1861 acccattggg caccctggcc ctcggggcat tcctggcatc gtgggagccg tgggtcagat
     1921 tggcaacacc gggcccaagg gaaaacgtgg agagaagggt gataggggag aagttggacg
     1981 agggcatccc gggatgcctg ggcccccagg gatcccagga ctgcctggcc ggtctggcca
     2041 ggcgatcaat ggcaaagatg gagatcgagg ggtcgcaggg gccccaggag aggcaggccg
     2101 acctggcctg ccaggcccca tggggctgcc aggattctgt gagcctgcgg cctgccttgg
     2161 agcctcagcc tacacgtctg cacgcctcac agagcctgga tccatcaagg ggccatgagc
     2221 atcaggccaa gatggagccc agtgggcatc ctgggggaaa aggactaggt gccctctggg
     2281 tggacatgca tcccattcct ctgcccagga aactagcttt cccgggacct ctgtctggga
     2341 cccaggagtc ctgaggaaaa ggaaattcta aaacatgggg gaagggaagg gaggacatca
     2401 gagtgaaaag gtgaggctaa cagacagggc aagtggcact ggagagtgcg aagtccagag
     2461 gatggggtgg ctttccttcc tggagcaccg ctcagatgtc accaaaacaa atgtctcctt
     2521 aatttacacc atcctccact ggccatcttg tccttggggc aagtggactg acacctttgc
     2581 tggttcctga ttccattttc acctcctggg cttactgggt gactgcccag aggtggccat
     2641 ccttaagcca gtccactact tcctccctac cttcctccca tctgagtatt taaacaccca
     2701 tctcccttcc ctttctggca tcaccttctc ccaccaaacc gctagatccg cccaggcctt
     2761 tctgtaaata aaagcccctg acttgggtac aaaccagga
//
LOCUS       XM_032611953            3748 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X1, mRNA.
ACCESSION   XM_032611953
VERSION     XM_032611953.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3748
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3748
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..2483
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X1"
                     /protein_id="XP_032467844.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIQPSPHE
                     PPYNNKAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTK
                     GKHFYSSSESEEEEESHKKFNIKIKPLQAKDILKNAATVDELKASIGNIALSPSPVGA
                     IKRNLSSEEVARPRRSTPTPELISRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQP
                     EIWGPGQPINPSTESPKLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGNDQAATE
                     VKIEKLPSINDLDSIFGPVLSPKSVAVNAEEKWVHFSDTSPERVTPELTPREKVVSPP
                     AASDNPADSPPPGPPGPPGPPGPPSPPRNVPSPLNLEEVQKKVAEQAFIKDDYLETIS
                     SPKDLGLGQRATPPAPPPPTYRTVVSSPGPGSGSGTGTTSGASSPARPATPLVLCSTT
                     TPPPPPPRPPSRPKLPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSISSTNS
                     LSAATTPTVVSEDDVFYDKLPSFERRCETPAGSSRGPSPLTMGAQDTLPVAAAFTETV
                     NAYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVTNFSRLEHVLPNP
                     QLLCCDNTQNDANTKEFWVNMPNLMIHLKKVSEQKPQATYYNVDMLKYQVSAQGIQST
                     PLNLAVNWRCEPASTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAV
                     WNAEQHRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCD
                     IELVGAGYRFSLIKKRFAAGKYLADN"
     misc_feature    1677..2477
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttcagcccag cccacatgaa ccaccctaca ataacaaagc agagtgcgca cgtgaaggag
      181 gaaaaaaagt ttcgaagaaa agcaatgggg caccaaatgg attttatgcg gaaattgatt
      241 gggaaagata caactcgcct gaactggatg aggaaggcta cagcatcaga cctgaggaac
      301 ccggctctac caaaggaaag cacttttatt cttcaagcga atcggaagag gaagaagaat
      361 cacacaagaa gtttaatatc aagattaagc cattgcaagc taaagacatt cttaagaacg
      421 ctgcaactgt agatgaactg aaggcatcaa taggcaacat tgcactttcc ccatcaccag
      481 tgggtgcaat taaaaggaac ttatccagtg aagaagtagc gagacccagg cgttccacac
      541 caactccaga actcataagc agaaaacctc cagatgacac catggcactt gctcccctct
      601 ttggcccacc attagaatca gcttttgatg aacagaagac agaagttctt ttagatcagc
      661 ctgagatatg gggtccaggc caaccaatta atccaagcac agagtcgcca aagttaacaa
      721 ggccttttcc cactggaaca cctccaccac tgcctccaaa acacgtacca gccactccac
      781 cccgaacagg ctccccctta acaactggac caggaaatga ccaggcagcc acagaggtca
      841 aaattgaaaa actaccatca atcaatgact tggacagcat ttttggccct gtgttgtccc
      901 ccaagtctgt tgctgttaat gctgaagaaa agtgggtcca tttttctgat acatccccgg
      961 aacgtgttac tccagagttg actccaaggg aaaaggtggt gtccccacca gctgcctcag
     1021 acaacccagc tgactccccg cctccgggcc ccccgggccc tcctggtccc ccaggacctc
     1081 caagtccccc tcgcaatgta ccatcgccac tcaacttaga agaagtccag aagaaagtcg
     1141 ctgagcaggc cttcattaaa gatgattact tagaaacaat ctcatctcct aaagatttgg
     1201 ggctggggca gagagcaact ccgcctgccc caccaccacc cacctacagg actgtggttt
     1261 catcccctgg acctggctcg ggcagtggta cggggaccac cagtggtgca tcatcccctg
     1321 ctcggccagc cacccccttg gttctttgca gcaccacgac cccacctcca cctcctcccc
     1381 ggcctccgtc tcggccaaag ctacctccag ggaagcctgg agtcggagat gtgccccgac
     1441 ctttcagccc tcccatccat tcttccagcc ctcctccgat agcaccccta gcccgagctg
     1501 aaagcacttc ttcaatatcg tccacaaatt ccttgagtgc agccaccacc ccgacagttg
     1561 tgtcagaaga tgatgttttt tatgacaaac tgccctcgtt tgaaaggcgc tgtgaaacgc
     1621 ctgcaggttc ttccagggga cccagccccc taaccatggg agcccaggac accctccctg
     1681 ttgcagcagc atttacagaa acagtcaatg cctacttcaa aggagcagat ccgagcaaat
     1741 gtatcgtgaa gattactgga gaaatggtgt tgtcctttcc tgccggcatc accagacact
     1801 ttgccaacaa cccatcgcca gctgccctga cttttcgggt gacaaatttc agcaggttag
     1861 aacacgtcct gccaaatccc caacttctct gctgtgataa tacccaaaat gatgccaata
     1921 ccaaggaatt ctgggtaaac atgccaaatt tgatgattca cctaaagaaa gtgtcggaac
     1981 aaaagcccca ggctacatat tataacgtgg atatgctcaa atatcaggtg tcagcccagg
     2041 gcattcagtc cacacctctg aacctggcag tgaactggcg atgtgagccg gcaagcaccg
     2101 acctgcgcat agattacaaa tacaatacgg atgcaatgac aacggccgtg gccctcaaca
     2161 atgtgcagtt cctggtcccc atagatggag gggtaaccaa gctccaggct gtgctcccac
     2221 cagcagtctg gaatgctgaa cagcacagaa tattgtggaa gattcctgat atttctcaga
     2281 agtcagaaaa tggaggagtg ggctctttat tggcaagatt tcagttatct gaaggcccaa
     2341 gcaaaccttc cccattggtt gtgcagttta caagtgaagg aagcaccctt tctggctgtg
     2401 acattgaact tgttggagca gggtatagat tttcactcat caagaaaagg tttgctgcag
     2461 gaaaatactt ggcagataac taataaaatc ttatgcaagg atttggagga ttcatataat
     2521 ggagaactac tgtatgagaa acaggtttta attttggttt gatgaaaaca aaccaaaatc
     2581 tgcacttggg gtatatctgc tggaaatgtc aatgactttc agcaatgatt tccctcacac
     2641 aataccatga tgaccagtcc tacagtattt gcttctaggt gtaatattgt taatggtttt
     2701 aaaatgtaat tattgtattt gtaaattgta ctcattccag taaggcagtt atacttgagt
     2761 tttagcattt taccattcct gaaatggatg taatttaaac tgtggtatgt aaatttaata
     2821 gtagtactgt tgaatggcac aatgcttaca gaggtagatt gcattttgtc aatatataaa
     2881 atttaaatat aatattgata gctgtcataa gggggtgcca cacacaaaga aaattcagtg
     2941 gaaccagaaa aaaacttcct tttcttcggt ccttagtatg ttttactcta gtgctaaata
     3001 aaaattctat cttcaaatat ttagtgggtt aaagtcagaa actatttcag aaaaaaaaaa
     3061 ttctaaggta catgtgcata ttcaaagaaa agcattaatt accacttttt aaaaagcttt
     3121 tttttcaaac tgcaaatttc ataaaaatgc aaactgtgta aacaggccct cttattttta
     3181 taacttgtgt aaaaagggaa agcaattcat atttaaagtt tatgaaatta taatcaagag
     3241 taaagaagat gtcgaagtct taactacttc cccctctctc cacagtttag cagatgtgga
     3301 gattactgaa taatcagact aaaacaaaaa ttgtgatttt aaaatttcaa gaatttccat
     3361 agttgaactg gttaacaact tttgcacaat aactctatac agagagtgcc tcccatccag
     3421 catggggaat ggtaccaagc atcttcctcc ttaccaatag gaactaaaac attgagtcta
     3481 aatatcccag aaaaaaaagg ttttagtccc ctacttaaat ccagaagaag aattttaatt
     3541 gtcatcattt atataatttg ggaaggaaaa aataagcttt ataaatcaaa ttctaaccac
     3601 attattatgc aataaatttc cttttggata agattcattg tatgtaacta taaatctttg
     3661 ccattcttgg ggaatcaaaa agagagttat caaaaatgta tgttatgatt tcattgttgc
     3721 aaggtataat aaaaactgta attactca
//
LOCUS       XM_032611963            3745 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X2, mRNA.
ACCESSION   XM_032611963
VERSION     XM_032611963.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3745
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3745
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..2480
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X2"
                     /protein_id="XP_032467854.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIQPSPHE
                     PPYNNKAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTK
                     GKHFYSSSESEEEEESHKKFNIKIKPLQAKDILKNAATVDELKASIGNIALSPSPVGA
                     IKRNLSSEEVARPRRSTPTPELIRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQPE
                     IWGPGQPINPSTESPKLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGNDQAATEV
                     KIEKLPSINDLDSIFGPVLSPKSVAVNAEEKWVHFSDTSPERVTPELTPREKVVSPPA
                     ASDNPADSPPPGPPGPPGPPGPPSPPRNVPSPLNLEEVQKKVAEQAFIKDDYLETISS
                     PKDLGLGQRATPPAPPPPTYRTVVSSPGPGSGSGTGTTSGASSPARPATPLVLCSTTT
                     PPPPPPRPPSRPKLPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSISSTNSL
                     SAATTPTVVSEDDVFYDKLPSFERRCETPAGSSRGPSPLTMGAQDTLPVAAAFTETVN
                     AYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVTNFSRLEHVLPNPQ
                     LLCCDNTQNDANTKEFWVNMPNLMIHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTP
                     LNLAVNWRCEPASTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVW
                     NAEQHRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDI
                     ELVGAGYRFSLIKKRFAAGKYLADN"
     misc_feature    1674..2474
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttcagcccag cccacatgaa ccaccctaca ataacaaagc agagtgcgca cgtgaaggag
      181 gaaaaaaagt ttcgaagaaa agcaatgggg caccaaatgg attttatgcg gaaattgatt
      241 gggaaagata caactcgcct gaactggatg aggaaggcta cagcatcaga cctgaggaac
      301 ccggctctac caaaggaaag cacttttatt cttcaagcga atcggaagag gaagaagaat
      361 cacacaagaa gtttaatatc aagattaagc cattgcaagc taaagacatt cttaagaacg
      421 ctgcaactgt agatgaactg aaggcatcaa taggcaacat tgcactttcc ccatcaccag
      481 tgggtgcaat taaaaggaac ttatccagtg aagaagtagc gagacccagg cgttccacac
      541 caactccaga actcataaga aaacctccag atgacaccat ggcacttgct cccctctttg
      601 gcccaccatt agaatcagct tttgatgaac agaagacaga agttctttta gatcagcctg
      661 agatatgggg tccaggccaa ccaattaatc caagcacaga gtcgccaaag ttaacaaggc
      721 cttttcccac tggaacacct ccaccactgc ctccaaaaca cgtaccagcc actccacccc
      781 gaacaggctc ccccttaaca actggaccag gaaatgacca ggcagccaca gaggtcaaaa
      841 ttgaaaaact accatcaatc aatgacttgg acagcatttt tggccctgtg ttgtccccca
      901 agtctgttgc tgttaatgct gaagaaaagt gggtccattt ttctgataca tccccggaac
      961 gtgttactcc agagttgact ccaagggaaa aggtggtgtc cccaccagct gcctcagaca
     1021 acccagctga ctccccgcct ccgggccccc cgggccctcc tggtccccca ggacctccaa
     1081 gtccccctcg caatgtacca tcgccactca acttagaaga agtccagaag aaagtcgctg
     1141 agcaggcctt cattaaagat gattacttag aaacaatctc atctcctaaa gatttggggc
     1201 tggggcagag agcaactccg cctgccccac caccacccac ctacaggact gtggtttcat
     1261 cccctggacc tggctcgggc agtggtacgg ggaccaccag tggtgcatca tcccctgctc
     1321 ggccagccac ccccttggtt ctttgcagca ccacgacccc acctccacct cctccccggc
     1381 ctccgtctcg gccaaagcta cctccaggga agcctggagt cggagatgtg ccccgacctt
     1441 tcagccctcc catccattct tccagccctc ctccgatagc acccctagcc cgagctgaaa
     1501 gcacttcttc aatatcgtcc acaaattcct tgagtgcagc caccaccccg acagttgtgt
     1561 cagaagatga tgttttttat gacaaactgc cctcgtttga aaggcgctgt gaaacgcctg
     1621 caggttcttc caggggaccc agccccctaa ccatgggagc ccaggacacc ctccctgttg
     1681 cagcagcatt tacagaaaca gtcaatgcct acttcaaagg agcagatccg agcaaatgta
     1741 tcgtgaagat tactggagaa atggtgttgt cctttcctgc cggcatcacc agacactttg
     1801 ccaacaaccc atcgccagct gccctgactt ttcgggtgac aaatttcagc aggttagaac
     1861 acgtcctgcc aaatccccaa cttctctgct gtgataatac ccaaaatgat gccaatacca
     1921 aggaattctg ggtaaacatg ccaaatttga tgattcacct aaagaaagtg tcggaacaaa
     1981 agccccaggc tacatattat aacgtggata tgctcaaata tcaggtgtca gcccagggca
     2041 ttcagtccac acctctgaac ctggcagtga actggcgatg tgagccggca agcaccgacc
     2101 tgcgcataga ttacaaatac aatacggatg caatgacaac ggccgtggcc ctcaacaatg
     2161 tgcagttcct ggtccccata gatggagggg taaccaagct ccaggctgtg ctcccaccag
     2221 cagtctggaa tgctgaacag cacagaatat tgtggaagat tcctgatatt tctcagaagt
     2281 cagaaaatgg aggagtgggc tctttattgg caagatttca gttatctgaa ggcccaagca
     2341 aaccttcccc attggttgtg cagtttacaa gtgaaggaag caccctttct ggctgtgaca
     2401 ttgaacttgt tggagcaggg tatagatttt cactcatcaa gaaaaggttt gctgcaggaa
     2461 aatacttggc agataactaa taaaatctta tgcaaggatt tggaggattc atataatgga
     2521 gaactactgt atgagaaaca ggttttaatt ttggtttgat gaaaacaaac caaaatctgc
     2581 acttggggta tatctgctgg aaatgtcaat gactttcagc aatgatttcc ctcacacaat
     2641 accatgatga ccagtcctac agtatttgct tctaggtgta atattgttaa tggttttaaa
     2701 atgtaattat tgtatttgta aattgtactc attccagtaa ggcagttata cttgagtttt
     2761 agcattttac cattcctgaa atggatgtaa tttaaactgt ggtatgtaaa tttaatagta
     2821 gtactgttga atggcacaat gcttacagag gtagattgca ttttgtcaat atataaaatt
     2881 taaatataat attgatagct gtcataaggg ggtgccacac acaaagaaaa ttcagtggaa
     2941 ccagaaaaaa acttcctttt cttcggtcct tagtatgttt tactctagtg ctaaataaaa
     3001 attctatctt caaatattta gtgggttaaa gtcagaaact atttcagaaa aaaaaaattc
     3061 taaggtacat gtgcatattc aaagaaaagc attaattacc actttttaaa aagctttttt
     3121 ttcaaactgc aaatttcata aaaatgcaaa ctgtgtaaac aggccctctt atttttataa
     3181 cttgtgtaaa aagggaaagc aattcatatt taaagtttat gaaattataa tcaagagtaa
     3241 agaagatgtc gaagtcttaa ctacttcccc ctctctccac agtttagcag atgtggagat
     3301 tactgaataa tcagactaaa acaaaaattg tgattttaaa atttcaagaa tttccatagt
     3361 tgaactggtt aacaactttt gcacaataac tctatacaga gagtgcctcc catccagcat
     3421 ggggaatggt accaagcatc ttcctcctta ccaataggaa ctaaaacatt gagtctaaat
     3481 atcccagaaa aaaaaggttt tagtccccta cttaaatcca gaagaagaat tttaattgtc
     3541 atcatttata taatttggga aggaaaaaat aagctttata aatcaaattc taaccacatt
     3601 attatgcaat aaatttcctt ttggataaga ttcattgtat gtaactataa atctttgcca
     3661 ttcttgggga atcaaaaaga gagttatcaa aaatgtatgt tatgatttca ttgttgcaag
     3721 gtataataaa aactgtaatt actca
//
LOCUS       XM_032611974            3745 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X3, mRNA.
ACCESSION   XM_032611974
VERSION     XM_032611974.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3745
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3745
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..2480
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X3"
                     /protein_id="XP_032467865.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIPSPHEP
                     PYNNKAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTKG
                     KHFYSSSESEEEEESHKKFNIKIKPLQAKDILKNAATVDELKASIGNIALSPSPVGAI
                     KRNLSSEEVARPRRSTPTPELISRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQPE
                     IWGPGQPINPSTESPKLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGNDQAATEV
                     KIEKLPSINDLDSIFGPVLSPKSVAVNAEEKWVHFSDTSPERVTPELTPREKVVSPPA
                     ASDNPADSPPPGPPGPPGPPGPPSPPRNVPSPLNLEEVQKKVAEQAFIKDDYLETISS
                     PKDLGLGQRATPPAPPPPTYRTVVSSPGPGSGSGTGTTSGASSPARPATPLVLCSTTT
                     PPPPPPRPPSRPKLPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSISSTNSL
                     SAATTPTVVSEDDVFYDKLPSFERRCETPAGSSRGPSPLTMGAQDTLPVAAAFTETVN
                     AYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVTNFSRLEHVLPNPQ
                     LLCCDNTQNDANTKEFWVNMPNLMIHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTP
                     LNLAVNWRCEPASTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVW
                     NAEQHRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDI
                     ELVGAGYRFSLIKKRFAAGKYLADN"
     misc_feature    1674..2474
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttcccagccc acatgaacca ccctacaata acaaagcaga gtgcgcacgt gaaggaggaa
      181 aaaaagtttc gaagaaaagc aatggggcac caaatggatt ttatgcggaa attgattggg
      241 aaagatacaa ctcgcctgaa ctggatgagg aaggctacag catcagacct gaggaacccg
      301 gctctaccaa aggaaagcac ttttattctt caagcgaatc ggaagaggaa gaagaatcac
      361 acaagaagtt taatatcaag attaagccat tgcaagctaa agacattctt aagaacgctg
      421 caactgtaga tgaactgaag gcatcaatag gcaacattgc actttcccca tcaccagtgg
      481 gtgcaattaa aaggaactta tccagtgaag aagtagcgag acccaggcgt tccacaccaa
      541 ctccagaact cataagcaga aaacctccag atgacaccat ggcacttgct cccctctttg
      601 gcccaccatt agaatcagct tttgatgaac agaagacaga agttctttta gatcagcctg
      661 agatatgggg tccaggccaa ccaattaatc caagcacaga gtcgccaaag ttaacaaggc
      721 cttttcccac tggaacacct ccaccactgc ctccaaaaca cgtaccagcc actccacccc
      781 gaacaggctc ccccttaaca actggaccag gaaatgacca ggcagccaca gaggtcaaaa
      841 ttgaaaaact accatcaatc aatgacttgg acagcatttt tggccctgtg ttgtccccca
      901 agtctgttgc tgttaatgct gaagaaaagt gggtccattt ttctgataca tccccggaac
      961 gtgttactcc agagttgact ccaagggaaa aggtggtgtc cccaccagct gcctcagaca
     1021 acccagctga ctccccgcct ccgggccccc cgggccctcc tggtccccca ggacctccaa
     1081 gtccccctcg caatgtacca tcgccactca acttagaaga agtccagaag aaagtcgctg
     1141 agcaggcctt cattaaagat gattacttag aaacaatctc atctcctaaa gatttggggc
     1201 tggggcagag agcaactccg cctgccccac caccacccac ctacaggact gtggtttcat
     1261 cccctggacc tggctcgggc agtggtacgg ggaccaccag tggtgcatca tcccctgctc
     1321 ggccagccac ccccttggtt ctttgcagca ccacgacccc acctccacct cctccccggc
     1381 ctccgtctcg gccaaagcta cctccaggga agcctggagt cggagatgtg ccccgacctt
     1441 tcagccctcc catccattct tccagccctc ctccgatagc acccctagcc cgagctgaaa
     1501 gcacttcttc aatatcgtcc acaaattcct tgagtgcagc caccaccccg acagttgtgt
     1561 cagaagatga tgttttttat gacaaactgc cctcgtttga aaggcgctgt gaaacgcctg
     1621 caggttcttc caggggaccc agccccctaa ccatgggagc ccaggacacc ctccctgttg
     1681 cagcagcatt tacagaaaca gtcaatgcct acttcaaagg agcagatccg agcaaatgta
     1741 tcgtgaagat tactggagaa atggtgttgt cctttcctgc cggcatcacc agacactttg
     1801 ccaacaaccc atcgccagct gccctgactt ttcgggtgac aaatttcagc aggttagaac
     1861 acgtcctgcc aaatccccaa cttctctgct gtgataatac ccaaaatgat gccaatacca
     1921 aggaattctg ggtaaacatg ccaaatttga tgattcacct aaagaaagtg tcggaacaaa
     1981 agccccaggc tacatattat aacgtggata tgctcaaata tcaggtgtca gcccagggca
     2041 ttcagtccac acctctgaac ctggcagtga actggcgatg tgagccggca agcaccgacc
     2101 tgcgcataga ttacaaatac aatacggatg caatgacaac ggccgtggcc ctcaacaatg
     2161 tgcagttcct ggtccccata gatggagggg taaccaagct ccaggctgtg ctcccaccag
     2221 cagtctggaa tgctgaacag cacagaatat tgtggaagat tcctgatatt tctcagaagt
     2281 cagaaaatgg aggagtgggc tctttattgg caagatttca gttatctgaa ggcccaagca
     2341 aaccttcccc attggttgtg cagtttacaa gtgaaggaag caccctttct ggctgtgaca
     2401 ttgaacttgt tggagcaggg tatagatttt cactcatcaa gaaaaggttt gctgcaggaa
     2461 aatacttggc agataactaa taaaatctta tgcaaggatt tggaggattc atataatgga
     2521 gaactactgt atgagaaaca ggttttaatt ttggtttgat gaaaacaaac caaaatctgc
     2581 acttggggta tatctgctgg aaatgtcaat gactttcagc aatgatttcc ctcacacaat
     2641 accatgatga ccagtcctac agtatttgct tctaggtgta atattgttaa tggttttaaa
     2701 atgtaattat tgtatttgta aattgtactc attccagtaa ggcagttata cttgagtttt
     2761 agcattttac cattcctgaa atggatgtaa tttaaactgt ggtatgtaaa tttaatagta
     2821 gtactgttga atggcacaat gcttacagag gtagattgca ttttgtcaat atataaaatt
     2881 taaatataat attgatagct gtcataaggg ggtgccacac acaaagaaaa ttcagtggaa
     2941 ccagaaaaaa acttcctttt cttcggtcct tagtatgttt tactctagtg ctaaataaaa
     3001 attctatctt caaatattta gtgggttaaa gtcagaaact atttcagaaa aaaaaaattc
     3061 taaggtacat gtgcatattc aaagaaaagc attaattacc actttttaaa aagctttttt
     3121 ttcaaactgc aaatttcata aaaatgcaaa ctgtgtaaac aggccctctt atttttataa
     3181 cttgtgtaaa aagggaaagc aattcatatt taaagtttat gaaattataa tcaagagtaa
     3241 agaagatgtc gaagtcttaa ctacttcccc ctctctccac agtttagcag atgtggagat
     3301 tactgaataa tcagactaaa acaaaaattg tgattttaaa atttcaagaa tttccatagt
     3361 tgaactggtt aacaactttt gcacaataac tctatacaga gagtgcctcc catccagcat
     3421 ggggaatggt accaagcatc ttcctcctta ccaataggaa ctaaaacatt gagtctaaat
     3481 atcccagaaa aaaaaggttt tagtccccta cttaaatcca gaagaagaat tttaattgtc
     3541 atcatttata taatttggga aggaaaaaat aagctttata aatcaaattc taaccacatt
     3601 attatgcaat aaatttcctt ttggataaga ttcattgtat gtaactataa atctttgcca
     3661 ttcttgggga atcaaaaaga gagttatcaa aaatgtatgt tatgatttca ttgttgcaag
     3721 gtataataaa aactgtaatt actca
//
LOCUS       XM_032611983            4042 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X4, mRNA.
ACCESSION   XM_032611983
VERSION     XM_032611983.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4042
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4042
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             318..2777
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X4"
                     /protein_id="XP_032467874.1"
                     /db_xref="GeneID:116743491"
                     /translation="MMEGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIQPSPHEPPYNN
                     KAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTKGKHFY
                     SSSESEEEEESHKKFNIKIKPLQAKDILKNAATVDELKASIGNIALSPSPVGAIKRNL
                     SSEEVARPRRSTPTPELISRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQPEIWGP
                     GQPINPSTESPKLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGNDQAATEVKIEK
                     LPSINDLDSIFGPVLSPKSVAVNAEEKWVHFSDTSPERVTPELTPREKVVSPPAASDN
                     PADSPPPGPPGPPGPPGPPSPPRNVPSPLNLEEVQKKVAEQAFIKDDYLETISSPKDL
                     GLGQRATPPAPPPPTYRTVVSSPGPGSGSGTGTTSGASSPARPATPLVLCSTTTPPPP
                     PPRPPSRPKLPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSISSTNSLSAAT
                     TPTVVSEDDVFYDKLPSFERRCETPAGSSRGPSPLTMGAQDTLPVAAAFTETVNAYFK
                     GADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVTNFSRLEHVLPNPQLLCC
                     DNTQNDANTKEFWVNMPNLMIHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTPLNLA
                     VNWRCEPASTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQ
                     HRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVG
                     AGYRFSLIKKRFAAGKYLADN"
     misc_feature    1971..2771
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 gcaggctggc taccatgtga cgcggtccag agctgaaggg attggccgag gcagcgcagg
       61 cggtgcagct tggccggctt gctgttcctc tccctttctc tcgcagcatc ttcctgggag
      121 cctgtaggtg aagcagcacc acaagcatcc atggcctatc tttggggtta acacttgtct
      181 cctttggctt cagcatcgga cagagcagat ctctcgacag cagcagcagc gttgtgagga
      241 cttagctggg acctggaatc gtatcctcct gtcttttttc agactctttg gaaattaagg
      301 aatgcaattc tgccaccatg atggaaggat tgaaaaaacg tacaaggaag gcctttggaa
      361 tacggaagaa agaaaaggac actgattcta caggttcacc agatagagat ggaattcagc
      421 ccagcccaca tgaaccaccc tacaataaca aagcagagtg cgcacgtgaa ggaggaaaaa
      481 aagtttcgaa gaaaagcaat ggggcaccaa atggatttta tgcggaaatt gattgggaaa
      541 gatacaactc gcctgaactg gatgaggaag gctacagcat cagacctgag gaacccggct
      601 ctaccaaagg aaagcacttt tattcttcaa gcgaatcgga agaggaagaa gaatcacaca
      661 agaagtttaa tatcaagatt aagccattgc aagctaaaga cattcttaag aacgctgcaa
      721 ctgtagatga actgaaggca tcaataggca acattgcact ttccccatca ccagtgggtg
      781 caattaaaag gaacttatcc agtgaagaag tagcgagacc caggcgttcc acaccaactc
      841 cagaactcat aagcagaaaa cctccagatg acaccatggc acttgctccc ctctttggcc
      901 caccattaga atcagctttt gatgaacaga agacagaagt tcttttagat cagcctgaga
      961 tatggggtcc aggccaacca attaatccaa gcacagagtc gccaaagtta acaaggcctt
     1021 ttcccactgg aacacctcca ccactgcctc caaaacacgt accagccact ccaccccgaa
     1081 caggctcccc cttaacaact ggaccaggaa atgaccaggc agccacagag gtcaaaattg
     1141 aaaaactacc atcaatcaat gacttggaca gcatttttgg ccctgtgttg tcccccaagt
     1201 ctgttgctgt taatgctgaa gaaaagtggg tccatttttc tgatacatcc ccggaacgtg
     1261 ttactccaga gttgactcca agggaaaagg tggtgtcccc accagctgcc tcagacaacc
     1321 cagctgactc cccgcctccg ggccccccgg gccctcctgg tcccccagga cctccaagtc
     1381 cccctcgcaa tgtaccatcg ccactcaact tagaagaagt ccagaagaaa gtcgctgagc
     1441 aggccttcat taaagatgat tacttagaaa caatctcatc tcctaaagat ttggggctgg
     1501 ggcagagagc aactccgcct gccccaccac cacccaccta caggactgtg gtttcatccc
     1561 ctggacctgg ctcgggcagt ggtacgggga ccaccagtgg tgcatcatcc cctgctcggc
     1621 cagccacccc cttggttctt tgcagcacca cgaccccacc tccacctcct ccccggcctc
     1681 cgtctcggcc aaagctacct ccagggaagc ctggagtcgg agatgtgccc cgacctttca
     1741 gccctcccat ccattcttcc agccctcctc cgatagcacc cctagcccga gctgaaagca
     1801 cttcttcaat atcgtccaca aattccttga gtgcagccac caccccgaca gttgtgtcag
     1861 aagatgatgt tttttatgac aaactgccct cgtttgaaag gcgctgtgaa acgcctgcag
     1921 gttcttccag gggacccagc cccctaacca tgggagccca ggacaccctc cctgttgcag
     1981 cagcatttac agaaacagtc aatgcctact tcaaaggagc agatccgagc aaatgtatcg
     2041 tgaagattac tggagaaatg gtgttgtcct ttcctgccgg catcaccaga cactttgcca
     2101 acaacccatc gccagctgcc ctgacttttc gggtgacaaa tttcagcagg ttagaacacg
     2161 tcctgccaaa tccccaactt ctctgctgtg ataataccca aaatgatgcc aataccaagg
     2221 aattctgggt aaacatgcca aatttgatga ttcacctaaa gaaagtgtcg gaacaaaagc
     2281 cccaggctac atattataac gtggatatgc tcaaatatca ggtgtcagcc cagggcattc
     2341 agtccacacc tctgaacctg gcagtgaact ggcgatgtga gccggcaagc accgacctgc
     2401 gcatagatta caaatacaat acggatgcaa tgacaacggc cgtggccctc aacaatgtgc
     2461 agttcctggt ccccatagat ggaggggtaa ccaagctcca ggctgtgctc ccaccagcag
     2521 tctggaatgc tgaacagcac agaatattgt ggaagattcc tgatatttct cagaagtcag
     2581 aaaatggagg agtgggctct ttattggcaa gatttcagtt atctgaaggc ccaagcaaac
     2641 cttccccatt ggttgtgcag tttacaagtg aaggaagcac cctttctggc tgtgacattg
     2701 aacttgttgg agcagggtat agattttcac tcatcaagaa aaggtttgct gcaggaaaat
     2761 acttggcaga taactaataa aatcttatgc aaggatttgg aggattcata taatggagaa
     2821 ctactgtatg agaaacaggt tttaattttg gtttgatgaa aacaaaccaa aatctgcact
     2881 tggggtatat ctgctggaaa tgtcaatgac tttcagcaat gatttccctc acacaatacc
     2941 atgatgacca gtcctacagt atttgcttct aggtgtaata ttgttaatgg ttttaaaatg
     3001 taattattgt atttgtaaat tgtactcatt ccagtaaggc agttatactt gagttttagc
     3061 attttaccat tcctgaaatg gatgtaattt aaactgtggt atgtaaattt aatagtagta
     3121 ctgttgaatg gcacaatgct tacagaggta gattgcattt tgtcaatata taaaatttaa
     3181 atataatatt gatagctgtc ataagggggt gccacacaca aagaaaattc agtggaacca
     3241 gaaaaaaact tccttttctt cggtccttag tatgttttac tctagtgcta aataaaaatt
     3301 ctatcttcaa atatttagtg ggttaaagtc agaaactatt tcagaaaaaa aaaattctaa
     3361 ggtacatgtg catattcaaa gaaaagcatt aattaccact ttttaaaaag cttttttttc
     3421 aaactgcaaa tttcataaaa atgcaaactg tgtaaacagg ccctcttatt tttataactt
     3481 gtgtaaaaag ggaaagcaat tcatatttaa agtttatgaa attataatca agagtaaaga
     3541 agatgtcgaa gtcttaacta cttccccctc tctccacagt ttagcagatg tggagattac
     3601 tgaataatca gactaaaaca aaaattgtga ttttaaaatt tcaagaattt ccatagttga
     3661 actggttaac aacttttgca caataactct atacagagag tgcctcccat ccagcatggg
     3721 gaatggtacc aagcatcttc ctccttacca ataggaacta aaacattgag tctaaatatc
     3781 ccagaaaaaa aaggttttag tcccctactt aaatccagaa gaagaatttt aattgtcatc
     3841 atttatataa tttgggaagg aaaaaataag ctttataaat caaattctaa ccacattatt
     3901 atgcaataaa tttccttttg gataagattc attgtatgta actataaatc tttgccattc
     3961 ttggggaatc aaaaagagag ttatcaaaaa tgtatgttat gatttcattg ttgcaaggta
     4021 taataaaaac tgtaattact ca
//
LOCUS       XM_032611992            3682 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X5, mRNA.
ACCESSION   XM_032611992
VERSION     XM_032611992.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3682
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..2417
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X5"
                     /protein_id="XP_032467883.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIQPSPHE
                     PPYNNKAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTK
                     GKHFYSSSESEEEEESHKKFNIKIKPLQAKDILKNAATVDELKASIGNIALSPSPVGA
                     IKRNLSSEEVARPRRSTPTPELISRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQP
                     EIWGPGQPINPSTESPKLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGNDQAATE
                     VKIEKLPSINDLDSIFGPVLSPKSVAVNAEEKWVHFSDTSPERVTPELTPREKVVSPP
                     AASDNPADSPPPGPPGPPGPPGPPSPPRNVPSPLNLEEVQKKVAEQAFIKDDYLETIS
                     SPKDLGLGQRATPPAPPPPTYRTVVSSPGPGSGSGTGTTSGASSPARPATPLVLCSTT
                     TPPPPPPRPPSRPKLPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSISSTNS
                     LSAATTPTVGSSRGPSPLTMGAQDTLPVAAAFTETVNAYFKGADPSKCIVKITGEMVL
                     SFPAGITRHFANNPSPAALTFRVTNFSRLEHVLPNPQLLCCDNTQNDANTKEFWVNMP
                     NLMIHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTPLNLAVNWRCEPASTDLRIDYK
                     YNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQHRILWKIPDISQKSENG
                     GVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIKKRFAAGKY
                     LADN"
     misc_feature    1611..2411
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttcagcccag cccacatgaa ccaccctaca ataacaaagc agagtgcgca cgtgaaggag
      181 gaaaaaaagt ttcgaagaaa agcaatgggg caccaaatgg attttatgcg gaaattgatt
      241 gggaaagata caactcgcct gaactggatg aggaaggcta cagcatcaga cctgaggaac
      301 ccggctctac caaaggaaag cacttttatt cttcaagcga atcggaagag gaagaagaat
      361 cacacaagaa gtttaatatc aagattaagc cattgcaagc taaagacatt cttaagaacg
      421 ctgcaactgt agatgaactg aaggcatcaa taggcaacat tgcactttcc ccatcaccag
      481 tgggtgcaat taaaaggaac ttatccagtg aagaagtagc gagacccagg cgttccacac
      541 caactccaga actcataagc agaaaacctc cagatgacac catggcactt gctcccctct
      601 ttggcccacc attagaatca gcttttgatg aacagaagac agaagttctt ttagatcagc
      661 ctgagatatg gggtccaggc caaccaatta atccaagcac agagtcgcca aagttaacaa
      721 ggccttttcc cactggaaca cctccaccac tgcctccaaa acacgtacca gccactccac
      781 cccgaacagg ctccccctta acaactggac caggaaatga ccaggcagcc acagaggtca
      841 aaattgaaaa actaccatca atcaatgact tggacagcat ttttggccct gtgttgtccc
      901 ccaagtctgt tgctgttaat gctgaagaaa agtgggtcca tttttctgat acatccccgg
      961 aacgtgttac tccagagttg actccaaggg aaaaggtggt gtccccacca gctgcctcag
     1021 acaacccagc tgactccccg cctccgggcc ccccgggccc tcctggtccc ccaggacctc
     1081 caagtccccc tcgcaatgta ccatcgccac tcaacttaga agaagtccag aagaaagtcg
     1141 ctgagcaggc cttcattaaa gatgattact tagaaacaat ctcatctcct aaagatttgg
     1201 ggctggggca gagagcaact ccgcctgccc caccaccacc cacctacagg actgtggttt
     1261 catcccctgg acctggctcg ggcagtggta cggggaccac cagtggtgca tcatcccctg
     1321 ctcggccagc cacccccttg gttctttgca gcaccacgac cccacctcca cctcctcccc
     1381 ggcctccgtc tcggccaaag ctacctccag ggaagcctgg agtcggagat gtgccccgac
     1441 ctttcagccc tcccatccat tcttccagcc ctcctccgat agcaccccta gcccgagctg
     1501 aaagcacttc ttcaatatcg tccacaaatt ccttgagtgc agccaccacc ccgacagttg
     1561 gttcttccag gggacccagc cccctaacca tgggagccca ggacaccctc cctgttgcag
     1621 cagcatttac agaaacagtc aatgcctact tcaaaggagc agatccgagc aaatgtatcg
     1681 tgaagattac tggagaaatg gtgttgtcct ttcctgccgg catcaccaga cactttgcca
     1741 acaacccatc gccagctgcc ctgacttttc gggtgacaaa tttcagcagg ttagaacacg
     1801 tcctgccaaa tccccaactt ctctgctgtg ataataccca aaatgatgcc aataccaagg
     1861 aattctgggt aaacatgcca aatttgatga ttcacctaaa gaaagtgtcg gaacaaaagc
     1921 cccaggctac atattataac gtggatatgc tcaaatatca ggtgtcagcc cagggcattc
     1981 agtccacacc tctgaacctg gcagtgaact ggcgatgtga gccggcaagc accgacctgc
     2041 gcatagatta caaatacaat acggatgcaa tgacaacggc cgtggccctc aacaatgtgc
     2101 agttcctggt ccccatagat ggaggggtaa ccaagctcca ggctgtgctc ccaccagcag
     2161 tctggaatgc tgaacagcac agaatattgt ggaagattcc tgatatttct cagaagtcag
     2221 aaaatggagg agtgggctct ttattggcaa gatttcagtt atctgaaggc ccaagcaaac
     2281 cttccccatt ggttgtgcag tttacaagtg aaggaagcac cctttctggc tgtgacattg
     2341 aacttgttgg agcagggtat agattttcac tcatcaagaa aaggtttgct gcaggaaaat
     2401 acttggcaga taactaataa aatcttatgc aaggatttgg aggattcata taatggagaa
     2461 ctactgtatg agaaacaggt tttaattttg gtttgatgaa aacaaaccaa aatctgcact
     2521 tggggtatat ctgctggaaa tgtcaatgac tttcagcaat gatttccctc acacaatacc
     2581 atgatgacca gtcctacagt atttgcttct aggtgtaata ttgttaatgg ttttaaaatg
     2641 taattattgt atttgtaaat tgtactcatt ccagtaaggc agttatactt gagttttagc
     2701 attttaccat tcctgaaatg gatgtaattt aaactgtggt atgtaaattt aatagtagta
     2761 ctgttgaatg gcacaatgct tacagaggta gattgcattt tgtcaatata taaaatttaa
     2821 atataatatt gatagctgtc ataagggggt gccacacaca aagaaaattc agtggaacca
     2881 gaaaaaaact tccttttctt cggtccttag tatgttttac tctagtgcta aataaaaatt
     2941 ctatcttcaa atatttagtg ggttaaagtc agaaactatt tcagaaaaaa aaaattctaa
     3001 ggtacatgtg catattcaaa gaaaagcatt aattaccact ttttaaaaag cttttttttc
     3061 aaactgcaaa tttcataaaa atgcaaactg tgtaaacagg ccctcttatt tttataactt
     3121 gtgtaaaaag ggaaagcaat tcatatttaa agtttatgaa attataatca agagtaaaga
     3181 agatgtcgaa gtcttaacta cttccccctc tctccacagt ttagcagatg tggagattac
     3241 tgaataatca gactaaaaca aaaattgtga ttttaaaatt tcaagaattt ccatagttga
     3301 actggttaac aacttttgca caataactct atacagagag tgcctcccat ccagcatggg
     3361 gaatggtacc aagcatcttc ctccttacca ataggaacta aaacattgag tctaaatatc
     3421 ccagaaaaaa aaggttttag tcccctactt aaatccagaa gaagaatttt aattgtcatc
     3481 atttatataa tttgggaagg aaaaaataag ctttataaat caaattctaa ccacattatt
     3541 atgcaataaa tttccttttg gataagattc attgtatgta actataaatc tttgccattc
     3601 ttggggaatc aaaaagagag ttatcaaaaa tgtatgttat gatttcattg ttgcaaggta
     3661 taataaaaac tgtaattact ca
//
LOCUS       XM_032612002            3676 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X6, mRNA.
ACCESSION   XM_032612002
VERSION     XM_032612002.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3676
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3676
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..2411
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X6"
                     /protein_id="XP_032467893.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIKKSNGA
                     PNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTKGKHFYSSSESEEEEESHKKFNIKI
                     KPLQAKDILKNAATVDELKASIGNIALSPSPVGAIKRNLSSEEVARPRRSTPTPELIS
                     RKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQPEIWGPGQPINPSTESPKLTRPFPT
                     GTPPPLPPKHVPATPPRTGSPLTTGPGNDQAATEVKIEKLPSINDLDSIFGPVLSPKS
                     VAVNAEEKWVHFSDTSPERVTPELTPREKVVSPPAASDNPADSPPPGPPGPPGPPGPP
                     SPPRNVPSPLNLEEVQKKVAEQAFIKDDYLETISSPKDLGLGQRATPPAPPPPTYRTV
                     VSSPGPGSGSGTGTTSGASSPARPATPLVLCSTTTPPPPPPRPPSRPKLPPGKPGVGD
                     VPRPFSPPIHSSSPPPIAPLARAESTSSISSTNSLSAATTPTVVSEDDVFYDKLPSFE
                     RRCETPAGSSRGPSPLTMGAQDTLPVAAAFTETVNAYFKGADPSKCIVKITGEMVLSF
                     PAGITRHFANNPSPAALTFRVTNFSRLEHVLPNPQLLCCDNTQNDANTKEFWVNMPNL
                     MIHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTPLNLAVNWRCEPASTDLRIDYKYN
                     TDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQHRILWKIPDISQKSENGGV
                     GSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIKKRFAAGKYLA
                     DN"
     misc_feature    1605..2405
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttaagaaaag caatggggca ccaaatggat tttatgcgga aattgattgg gaaagataca
      181 actcgcctga actggatgag gaaggctaca gcatcagacc tgaggaaccc ggctctacca
      241 aaggaaagca cttttattct tcaagcgaat cggaagagga agaagaatca cacaagaagt
      301 ttaatatcaa gattaagcca ttgcaagcta aagacattct taagaacgct gcaactgtag
      361 atgaactgaa ggcatcaata ggcaacattg cactttcccc atcaccagtg ggtgcaatta
      421 aaaggaactt atccagtgaa gaagtagcga gacccaggcg ttccacacca actccagaac
      481 tcataagcag aaaacctcca gatgacacca tggcacttgc tcccctcttt ggcccaccat
      541 tagaatcagc ttttgatgaa cagaagacag aagttctttt agatcagcct gagatatggg
      601 gtccaggcca accaattaat ccaagcacag agtcgccaaa gttaacaagg ccttttccca
      661 ctggaacacc tccaccactg cctccaaaac acgtaccagc cactccaccc cgaacaggct
      721 cccccttaac aactggacca ggaaatgacc aggcagccac agaggtcaaa attgaaaaac
      781 taccatcaat caatgacttg gacagcattt ttggccctgt gttgtccccc aagtctgttg
      841 ctgttaatgc tgaagaaaag tgggtccatt tttctgatac atccccggaa cgtgttactc
      901 cagagttgac tccaagggaa aaggtggtgt ccccaccagc tgcctcagac aacccagctg
      961 actccccgcc tccgggcccc ccgggccctc ctggtccccc aggacctcca agtccccctc
     1021 gcaatgtacc atcgccactc aacttagaag aagtccagaa gaaagtcgct gagcaggcct
     1081 tcattaaaga tgattactta gaaacaatct catctcctaa agatttgggg ctggggcaga
     1141 gagcaactcc gcctgcccca ccaccaccca cctacaggac tgtggtttca tcccctggac
     1201 ctggctcggg cagtggtacg gggaccacca gtggtgcatc atcccctgct cggccagcca
     1261 cccccttggt tctttgcagc accacgaccc cacctccacc tcctccccgg cctccgtctc
     1321 ggccaaagct acctccaggg aagcctggag tcggagatgt gccccgacct ttcagccctc
     1381 ccatccattc ttccagccct cctccgatag cacccctagc ccgagctgaa agcacttctt
     1441 caatatcgtc cacaaattcc ttgagtgcag ccaccacccc gacagttgtg tcagaagatg
     1501 atgtttttta tgacaaactg ccctcgtttg aaaggcgctg tgaaacgcct gcaggttctt
     1561 ccaggggacc cagcccccta accatgggag cccaggacac cctccctgtt gcagcagcat
     1621 ttacagaaac agtcaatgcc tacttcaaag gagcagatcc gagcaaatgt atcgtgaaga
     1681 ttactggaga aatggtgttg tcctttcctg ccggcatcac cagacacttt gccaacaacc
     1741 catcgccagc tgccctgact tttcgggtga caaatttcag caggttagaa cacgtcctgc
     1801 caaatcccca acttctctgc tgtgataata cccaaaatga tgccaatacc aaggaattct
     1861 gggtaaacat gccaaatttg atgattcacc taaagaaagt gtcggaacaa aagccccagg
     1921 ctacatatta taacgtggat atgctcaaat atcaggtgtc agcccagggc attcagtcca
     1981 cacctctgaa cctggcagtg aactggcgat gtgagccggc aagcaccgac ctgcgcatag
     2041 attacaaata caatacggat gcaatgacaa cggccgtggc cctcaacaat gtgcagttcc
     2101 tggtccccat agatggaggg gtaaccaagc tccaggctgt gctcccacca gcagtctgga
     2161 atgctgaaca gcacagaata ttgtggaaga ttcctgatat ttctcagaag tcagaaaatg
     2221 gaggagtggg ctctttattg gcaagatttc agttatctga aggcccaagc aaaccttccc
     2281 cattggttgt gcagtttaca agtgaaggaa gcaccctttc tggctgtgac attgaacttg
     2341 ttggagcagg gtatagattt tcactcatca agaaaaggtt tgctgcagga aaatacttgg
     2401 cagataacta ataaaatctt atgcaaggat ttggaggatt catataatgg agaactactg
     2461 tatgagaaac aggttttaat tttggtttga tgaaaacaaa ccaaaatctg cacttggggt
     2521 atatctgctg gaaatgtcaa tgactttcag caatgatttc cctcacacaa taccatgatg
     2581 accagtccta cagtatttgc ttctaggtgt aatattgtta atggttttaa aatgtaatta
     2641 ttgtatttgt aaattgtact cattccagta aggcagttat acttgagttt tagcatttta
     2701 ccattcctga aatggatgta atttaaactg tggtatgtaa atttaatagt agtactgttg
     2761 aatggcacaa tgcttacaga ggtagattgc attttgtcaa tatataaaat ttaaatataa
     2821 tattgatagc tgtcataagg gggtgccaca cacaaagaaa attcagtgga accagaaaaa
     2881 aacttccttt tcttcggtcc ttagtatgtt ttactctagt gctaaataaa aattctatct
     2941 tcaaatattt agtgggttaa agtcagaaac tatttcagaa aaaaaaaatt ctaaggtaca
     3001 tgtgcatatt caaagaaaag cattaattac cactttttaa aaagcttttt tttcaaactg
     3061 caaatttcat aaaaatgcaa actgtgtaaa caggccctct tatttttata acttgtgtaa
     3121 aaagggaaag caattcatat ttaaagttta tgaaattata atcaagagta aagaagatgt
     3181 cgaagtctta actacttccc cctctctcca cagtttagca gatgtggaga ttactgaata
     3241 atcagactaa aacaaaaatt gtgattttaa aatttcaaga atttccatag ttgaactggt
     3301 taacaacttt tgcacaataa ctctatacag agagtgcctc ccatccagca tggggaatgg
     3361 taccaagcat cttcctcctt accaatagga actaaaacat tgagtctaaa tatcccagaa
     3421 aaaaaaggtt ttagtcccct acttaaatcc agaagaagaa ttttaattgt catcatttat
     3481 ataatttggg aaggaaaaaa taagctttat aaatcaaatt ctaaccacat tattatgcaa
     3541 taaatttcct tttggataag attcattgta tgtaactata aatctttgcc attcttgggg
     3601 aatcaaaaag agagttatca aaaatgtatg ttatgatttc attgttgcaa ggtataataa
     3661 aaactgtaat tactca
//
LOCUS       XM_032612011            3256 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X7, mRNA.
ACCESSION   XM_032612011
VERSION     XM_032612011.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3256
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3256
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..1991
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X7"
                     /protein_id="XP_032467902.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIQPSPHE
                     PPYNNKAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTK
                     GKHFYSSSESEEEEESHKKFNIKIKPLQAKDILKNAATVDELKASIGNIALSPSPVGA
                     IKRNLSSEEVARPRRSTPTPELISRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQP
                     EIWGPGQPINPSTESPKLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGASSPARP
                     ATPLVLCSTTTPPPPPPRPPSRPKLPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAE
                     STSSISSTNSLSAATTPTVVSEDDVFYDKLPSFERRCETPAGSSRGPSPLTMGAQDTL
                     PVAAAFTETVNAYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVTNF
                     SRLEHVLPNPQLLCCDNTQNDANTKEFWVNMPNLMIHLKKVSEQKPQATYYNVDMLKY
                     QVSAQGIQSTPLNLAVNWRCEPASTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVT
                     KLQAVLPPAVWNAEQHRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFT
                     SEGSTLSGCDIELVGAGYRFSLIKKRFAAGKYLADN"
     misc_feature    1185..1985
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttcagcccag cccacatgaa ccaccctaca ataacaaagc agagtgcgca cgtgaaggag
      181 gaaaaaaagt ttcgaagaaa agcaatgggg caccaaatgg attttatgcg gaaattgatt
      241 gggaaagata caactcgcct gaactggatg aggaaggcta cagcatcaga cctgaggaac
      301 ccggctctac caaaggaaag cacttttatt cttcaagcga atcggaagag gaagaagaat
      361 cacacaagaa gtttaatatc aagattaagc cattgcaagc taaagacatt cttaagaacg
      421 ctgcaactgt agatgaactg aaggcatcaa taggcaacat tgcactttcc ccatcaccag
      481 tgggtgcaat taaaaggaac ttatccagtg aagaagtagc gagacccagg cgttccacac
      541 caactccaga actcataagc agaaaacctc cagatgacac catggcactt gctcccctct
      601 ttggcccacc attagaatca gcttttgatg aacagaagac agaagttctt ttagatcagc
      661 ctgagatatg gggtccaggc caaccaatta atccaagcac agagtcgcca aagttaacaa
      721 ggccttttcc cactggaaca cctccaccac tgcctccaaa acacgtacca gccactccac
      781 cccgaacagg ctccccctta acaactggac caggtgcatc atcccctgct cggccagcca
      841 cccccttggt tctttgcagc accacgaccc cacctccacc tcctccccgg cctccgtctc
      901 ggccaaagct acctccaggg aagcctggag tcggagatgt gccccgacct ttcagccctc
      961 ccatccattc ttccagccct cctccgatag cacccctagc ccgagctgaa agcacttctt
     1021 caatatcgtc cacaaattcc ttgagtgcag ccaccacccc gacagttgtg tcagaagatg
     1081 atgtttttta tgacaaactg ccctcgtttg aaaggcgctg tgaaacgcct gcaggttctt
     1141 ccaggggacc cagcccccta accatgggag cccaggacac cctccctgtt gcagcagcat
     1201 ttacagaaac agtcaatgcc tacttcaaag gagcagatcc gagcaaatgt atcgtgaaga
     1261 ttactggaga aatggtgttg tcctttcctg ccggcatcac cagacacttt gccaacaacc
     1321 catcgccagc tgccctgact tttcgggtga caaatttcag caggttagaa cacgtcctgc
     1381 caaatcccca acttctctgc tgtgataata cccaaaatga tgccaatacc aaggaattct
     1441 gggtaaacat gccaaatttg atgattcacc taaagaaagt gtcggaacaa aagccccagg
     1501 ctacatatta taacgtggat atgctcaaat atcaggtgtc agcccagggc attcagtcca
     1561 cacctctgaa cctggcagtg aactggcgat gtgagccggc aagcaccgac ctgcgcatag
     1621 attacaaata caatacggat gcaatgacaa cggccgtggc cctcaacaat gtgcagttcc
     1681 tggtccccat agatggaggg gtaaccaagc tccaggctgt gctcccacca gcagtctgga
     1741 atgctgaaca gcacagaata ttgtggaaga ttcctgatat ttctcagaag tcagaaaatg
     1801 gaggagtggg ctctttattg gcaagatttc agttatctga aggcccaagc aaaccttccc
     1861 cattggttgt gcagtttaca agtgaaggaa gcaccctttc tggctgtgac attgaacttg
     1921 ttggagcagg gtatagattt tcactcatca agaaaaggtt tgctgcagga aaatacttgg
     1981 cagataacta ataaaatctt atgcaaggat ttggaggatt catataatgg agaactactg
     2041 tatgagaaac aggttttaat tttggtttga tgaaaacaaa ccaaaatctg cacttggggt
     2101 atatctgctg gaaatgtcaa tgactttcag caatgatttc cctcacacaa taccatgatg
     2161 accagtccta cagtatttgc ttctaggtgt aatattgtta atggttttaa aatgtaatta
     2221 ttgtatttgt aaattgtact cattccagta aggcagttat acttgagttt tagcatttta
     2281 ccattcctga aatggatgta atttaaactg tggtatgtaa atttaatagt agtactgttg
     2341 aatggcacaa tgcttacaga ggtagattgc attttgtcaa tatataaaat ttaaatataa
     2401 tattgatagc tgtcataagg gggtgccaca cacaaagaaa attcagtgga accagaaaaa
     2461 aacttccttt tcttcggtcc ttagtatgtt ttactctagt gctaaataaa aattctatct
     2521 tcaaatattt agtgggttaa agtcagaaac tatttcagaa aaaaaaaatt ctaaggtaca
     2581 tgtgcatatt caaagaaaag cattaattac cactttttaa aaagcttttt tttcaaactg
     2641 caaatttcat aaaaatgcaa actgtgtaaa caggccctct tatttttata acttgtgtaa
     2701 aaagggaaag caattcatat ttaaagttta tgaaattata atcaagagta aagaagatgt
     2761 cgaagtctta actacttccc cctctctcca cagtttagca gatgtggaga ttactgaata
     2821 atcagactaa aacaaaaatt gtgattttaa aatttcaaga atttccatag ttgaactggt
     2881 taacaacttt tgcacaataa ctctatacag agagtgcctc ccatccagca tggggaatgg
     2941 taccaagcat cttcctcctt accaatagga actaaaacat tgagtctaaa tatcccagaa
     3001 aaaaaaggtt ttagtcccct acttaaatcc agaagaagaa ttttaattgt catcatttat
     3061 ataatttggg aaggaaaaaa taagctttat aaatcaaatt ctaaccacat tattatgcaa
     3121 taaatttcct tttggataag attcattgta tgtaactata aatctttgcc attcttgggg
     3181 aatcaaaaag agagttatca aaaatgtatg ttatgatttc attgttgcaa ggtataataa
     3241 aaactgtaat tactca
//
LOCUS       XM_032612021            3190 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X8, mRNA.
ACCESSION   XM_032612021
VERSION     XM_032612021.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3190
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..1925
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X8"
                     /protein_id="XP_032467912.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIQPSPHE
                     PPYNNKAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTK
                     GKHFYSSSESEEEEESHKKFNIKIKPLQAKDILKNAATVDELKASIGNIALSPSPVGA
                     IKRNLSSEEVARPRRSTPTPELISRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQP
                     EIWGPGQPINPSTESPKLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGASSPARP
                     ATPLVLCSTTTPPPPPPRPPSRPKLPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAE
                     STSSISSTNSLSAATTPTVGSSRGPSPLTMGAQDTLPVAAAFTETVNAYFKGADPSKC
                     IVKITGEMVLSFPAGITRHFANNPSPAALTFRVTNFSRLEHVLPNPQLLCCDNTQNDA
                     NTKEFWVNMPNLMIHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTPLNLAVNWRCEP
                     ASTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQHRILWKI
                     PDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSL
                     IKKRFAAGKYLADN"
     misc_feature    1119..1919
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttcagcccag cccacatgaa ccaccctaca ataacaaagc agagtgcgca cgtgaaggag
      181 gaaaaaaagt ttcgaagaaa agcaatgggg caccaaatgg attttatgcg gaaattgatt
      241 gggaaagata caactcgcct gaactggatg aggaaggcta cagcatcaga cctgaggaac
      301 ccggctctac caaaggaaag cacttttatt cttcaagcga atcggaagag gaagaagaat
      361 cacacaagaa gtttaatatc aagattaagc cattgcaagc taaagacatt cttaagaacg
      421 ctgcaactgt agatgaactg aaggcatcaa taggcaacat tgcactttcc ccatcaccag
      481 tgggtgcaat taaaaggaac ttatccagtg aagaagtagc gagacccagg cgttccacac
      541 caactccaga actcataagc agaaaacctc cagatgacac catggcactt gctcccctct
      601 ttggcccacc attagaatca gcttttgatg aacagaagac agaagttctt ttagatcagc
      661 ctgagatatg gggtccaggc caaccaatta atccaagcac agagtcgcca aagttaacaa
      721 ggccttttcc cactggaaca cctccaccac tgcctccaaa acacgtacca gccactccac
      781 cccgaacagg ctccccctta acaactggac caggtgcatc atcccctgct cggccagcca
      841 cccccttggt tctttgcagc accacgaccc cacctccacc tcctccccgg cctccgtctc
      901 ggccaaagct acctccaggg aagcctggag tcggagatgt gccccgacct ttcagccctc
      961 ccatccattc ttccagccct cctccgatag cacccctagc ccgagctgaa agcacttctt
     1021 caatatcgtc cacaaattcc ttgagtgcag ccaccacccc gacagttggt tcttccaggg
     1081 gacccagccc cctaaccatg ggagcccagg acaccctccc tgttgcagca gcatttacag
     1141 aaacagtcaa tgcctacttc aaaggagcag atccgagcaa atgtatcgtg aagattactg
     1201 gagaaatggt gttgtccttt cctgccggca tcaccagaca ctttgccaac aacccatcgc
     1261 cagctgccct gacttttcgg gtgacaaatt tcagcaggtt agaacacgtc ctgccaaatc
     1321 cccaacttct ctgctgtgat aatacccaaa atgatgccaa taccaaggaa ttctgggtaa
     1381 acatgccaaa tttgatgatt cacctaaaga aagtgtcgga acaaaagccc caggctacat
     1441 attataacgt ggatatgctc aaatatcagg tgtcagccca gggcattcag tccacacctc
     1501 tgaacctggc agtgaactgg cgatgtgagc cggcaagcac cgacctgcgc atagattaca
     1561 aatacaatac ggatgcaatg acaacggccg tggccctcaa caatgtgcag ttcctggtcc
     1621 ccatagatgg aggggtaacc aagctccagg ctgtgctccc accagcagtc tggaatgctg
     1681 aacagcacag aatattgtgg aagattcctg atatttctca gaagtcagaa aatggaggag
     1741 tgggctcttt attggcaaga tttcagttat ctgaaggccc aagcaaacct tccccattgg
     1801 ttgtgcagtt tacaagtgaa ggaagcaccc tttctggctg tgacattgaa cttgttggag
     1861 cagggtatag attttcactc atcaagaaaa ggtttgctgc aggaaaatac ttggcagata
     1921 actaataaaa tcttatgcaa ggatttggag gattcatata atggagaact actgtatgag
     1981 aaacaggttt taattttggt ttgatgaaaa caaaccaaaa tctgcacttg gggtatatct
     2041 gctggaaatg tcaatgactt tcagcaatga tttccctcac acaataccat gatgaccagt
     2101 cctacagtat ttgcttctag gtgtaatatt gttaatggtt ttaaaatgta attattgtat
     2161 ttgtaaattg tactcattcc agtaaggcag ttatacttga gttttagcat tttaccattc
     2221 ctgaaatgga tgtaatttaa actgtggtat gtaaatttaa tagtagtact gttgaatggc
     2281 acaatgctta cagaggtaga ttgcattttg tcaatatata aaatttaaat ataatattga
     2341 tagctgtcat aagggggtgc cacacacaaa gaaaattcag tggaaccaga aaaaaacttc
     2401 cttttcttcg gtccttagta tgttttactc tagtgctaaa taaaaattct atcttcaaat
     2461 atttagtggg ttaaagtcag aaactatttc agaaaaaaaa aattctaagg tacatgtgca
     2521 tattcaaaga aaagcattaa ttaccacttt ttaaaaagct tttttttcaa actgcaaatt
     2581 tcataaaaat gcaaactgtg taaacaggcc ctcttatttt tataacttgt gtaaaaaggg
     2641 aaagcaattc atatttaaag tttatgaaat tataatcaag agtaaagaag atgtcgaagt
     2701 cttaactact tccccctctc tccacagttt agcagatgtg gagattactg aataatcaga
     2761 ctaaaacaaa aattgtgatt ttaaaatttc aagaatttcc atagttgaac tggttaacaa
     2821 cttttgcaca ataactctat acagagagtg cctcccatcc agcatgggga atggtaccaa
     2881 gcatcttcct ccttaccaat aggaactaaa acattgagtc taaatatccc agaaaaaaaa
     2941 ggttttagtc ccctacttaa atccagaaga agaattttaa ttgtcatcat ttatataatt
     3001 tgggaaggaa aaaataagct ttataaatca aattctaacc acattattat gcaataaatt
     3061 tccttttgga taagattcat tgtatgtaac tataaatctt tgccattctt ggggaatcaa
     3121 aaagagagtt atcaaaaatg tatgttatga tttcattgtt gcaaggtata ataaaaactg
     3181 taattactca
//
LOCUS       XM_032612029            3184 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X9, mRNA.
ACCESSION   XM_032612029
VERSION     XM_032612029.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3184
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..1919
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X9"
                     /protein_id="XP_032467920.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIKKSNGA
                     PNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTKGKHFYSSSESEEEEESHKKFNIKI
                     KPLQAKDILKNAATVDELKASIGNIALSPSPVGAIKRNLSSEEVARPRRSTPTPELIS
                     RKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQPEIWGPGQPINPSTESPKLTRPFPT
                     GTPPPLPPKHVPATPPRTGSPLTTGPGASSPARPATPLVLCSTTTPPPPPPRPPSRPK
                     LPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSISSTNSLSAATTPTVVSEDD
                     VFYDKLPSFERRCETPAGSSRGPSPLTMGAQDTLPVAAAFTETVNAYFKGADPSKCIV
                     KITGEMVLSFPAGITRHFANNPSPAALTFRVTNFSRLEHVLPNPQLLCCDNTQNDANT
                     KEFWVNMPNLMIHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTPLNLAVNWRCEPAS
                     TDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQHRILWKIPD
                     ISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIK
                     KRFAAGKYLADN"
     misc_feature    1113..1913
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttaagaaaag caatggggca ccaaatggat tttatgcgga aattgattgg gaaagataca
      181 actcgcctga actggatgag gaaggctaca gcatcagacc tgaggaaccc ggctctacca
      241 aaggaaagca cttttattct tcaagcgaat cggaagagga agaagaatca cacaagaagt
      301 ttaatatcaa gattaagcca ttgcaagcta aagacattct taagaacgct gcaactgtag
      361 atgaactgaa ggcatcaata ggcaacattg cactttcccc atcaccagtg ggtgcaatta
      421 aaaggaactt atccagtgaa gaagtagcga gacccaggcg ttccacacca actccagaac
      481 tcataagcag aaaacctcca gatgacacca tggcacttgc tcccctcttt ggcccaccat
      541 tagaatcagc ttttgatgaa cagaagacag aagttctttt agatcagcct gagatatggg
      601 gtccaggcca accaattaat ccaagcacag agtcgccaaa gttaacaagg ccttttccca
      661 ctggaacacc tccaccactg cctccaaaac acgtaccagc cactccaccc cgaacaggct
      721 cccccttaac aactggacca ggtgcatcat cccctgctcg gccagccacc cccttggttc
      781 tttgcagcac cacgacccca cctccacctc ctccccggcc tccgtctcgg ccaaagctac
      841 ctccagggaa gcctggagtc ggagatgtgc cccgaccttt cagccctccc atccattctt
      901 ccagccctcc tccgatagca cccctagccc gagctgaaag cacttcttca atatcgtcca
      961 caaattcctt gagtgcagcc accaccccga cagttgtgtc agaagatgat gttttttatg
     1021 acaaactgcc ctcgtttgaa aggcgctgtg aaacgcctgc aggttcttcc aggggaccca
     1081 gccccctaac catgggagcc caggacaccc tccctgttgc agcagcattt acagaaacag
     1141 tcaatgccta cttcaaagga gcagatccga gcaaatgtat cgtgaagatt actggagaaa
     1201 tggtgttgtc ctttcctgcc ggcatcacca gacactttgc caacaaccca tcgccagctg
     1261 ccctgacttt tcgggtgaca aatttcagca ggttagaaca cgtcctgcca aatccccaac
     1321 ttctctgctg tgataatacc caaaatgatg ccaataccaa ggaattctgg gtaaacatgc
     1381 caaatttgat gattcaccta aagaaagtgt cggaacaaaa gccccaggct acatattata
     1441 acgtggatat gctcaaatat caggtgtcag cccagggcat tcagtccaca cctctgaacc
     1501 tggcagtgaa ctggcgatgt gagccggcaa gcaccgacct gcgcatagat tacaaataca
     1561 atacggatgc aatgacaacg gccgtggccc tcaacaatgt gcagttcctg gtccccatag
     1621 atggaggggt aaccaagctc caggctgtgc tcccaccagc agtctggaat gctgaacagc
     1681 acagaatatt gtggaagatt cctgatattt ctcagaagtc agaaaatgga ggagtgggct
     1741 ctttattggc aagatttcag ttatctgaag gcccaagcaa accttcccca ttggttgtgc
     1801 agtttacaag tgaaggaagc accctttctg gctgtgacat tgaacttgtt ggagcagggt
     1861 atagattttc actcatcaag aaaaggtttg ctgcaggaaa atacttggca gataactaat
     1921 aaaatcttat gcaaggattt ggaggattca tataatggag aactactgta tgagaaacag
     1981 gttttaattt tggtttgatg aaaacaaacc aaaatctgca cttggggtat atctgctgga
     2041 aatgtcaatg actttcagca atgatttccc tcacacaata ccatgatgac cagtcctaca
     2101 gtatttgctt ctaggtgtaa tattgttaat ggttttaaaa tgtaattatt gtatttgtaa
     2161 attgtactca ttccagtaag gcagttatac ttgagtttta gcattttacc attcctgaaa
     2221 tggatgtaat ttaaactgtg gtatgtaaat ttaatagtag tactgttgaa tggcacaatg
     2281 cttacagagg tagattgcat tttgtcaata tataaaattt aaatataata ttgatagctg
     2341 tcataagggg gtgccacaca caaagaaaat tcagtggaac cagaaaaaaa cttccttttc
     2401 ttcggtcctt agtatgtttt actctagtgc taaataaaaa ttctatcttc aaatatttag
     2461 tgggttaaag tcagaaacta tttcagaaaa aaaaaattct aaggtacatg tgcatattca
     2521 aagaaaagca ttaattacca ctttttaaaa agcttttttt tcaaactgca aatttcataa
     2581 aaatgcaaac tgtgtaaaca ggccctctta tttttataac ttgtgtaaaa agggaaagca
     2641 attcatattt aaagtttatg aaattataat caagagtaaa gaagatgtcg aagtcttaac
     2701 tacttccccc tctctccaca gtttagcaga tgtggagatt actgaataat cagactaaaa
     2761 caaaaattgt gattttaaaa tttcaagaat ttccatagtt gaactggtta acaacttttg
     2821 cacaataact ctatacagag agtgcctccc atccagcatg gggaatggta ccaagcatct
     2881 tcctccttac caataggaac taaaacattg agtctaaata tcccagaaaa aaaaggtttt
     2941 agtcccctac ttaaatccag aagaagaatt ttaattgtca tcatttatat aatttgggaa
     3001 ggaaaaaata agctttataa atcaaattct aaccacatta ttatgcaata aatttccttt
     3061 tggataagat tcattgtatg taactataaa tctttgccat tcttggggaa tcaaaaagag
     3121 agttatcaaa aatgtatgtt atgatttcat tgttgcaagg tataataaaa actgtaatta
     3181 ctca
//
LOCUS       XM_032612036            3118 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X10, mRNA.
ACCESSION   XM_032612036
VERSION     XM_032612036.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3118
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             9..1853
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X10"
                     /protein_id="XP_032467927.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIKKSNGA
                     PNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTKGKHFYSSSESEEEEESHKKFNIKI
                     KPLQAKDILKNAATVDELKASIGNIALSPSPVGAIKRNLSSEEVARPRRSTPTPELIS
                     RKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQPEIWGPGQPINPSTESPKLTRPFPT
                     GTPPPLPPKHVPATPPRTGSPLTTGPGASSPARPATPLVLCSTTTPPPPPPRPPSRPK
                     LPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSISSTNSLSAATTPTVGSSRG
                     PSPLTMGAQDTLPVAAAFTETVNAYFKGADPSKCIVKITGEMVLSFPAGITRHFANNP
                     SPAALTFRVTNFSRLEHVLPNPQLLCCDNTQNDANTKEFWVNMPNLMIHLKKVSEQKP
                     QATYYNVDMLKYQVSAQGIQSTPLNLAVNWRCEPASTDLRIDYKYNTDAMTTAVALNN
                     VQFLVPIDGGVTKLQAVLPPAVWNAEQHRILWKIPDISQKSENGGVGSLLARFQLSEG
                     PSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIKKRFAAGKYLADN"
     misc_feature    1047..1847
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttaagaaaag caatggggca ccaaatggat tttatgcgga aattgattgg gaaagataca
      181 actcgcctga actggatgag gaaggctaca gcatcagacc tgaggaaccc ggctctacca
      241 aaggaaagca cttttattct tcaagcgaat cggaagagga agaagaatca cacaagaagt
      301 ttaatatcaa gattaagcca ttgcaagcta aagacattct taagaacgct gcaactgtag
      361 atgaactgaa ggcatcaata ggcaacattg cactttcccc atcaccagtg ggtgcaatta
      421 aaaggaactt atccagtgaa gaagtagcga gacccaggcg ttccacacca actccagaac
      481 tcataagcag aaaacctcca gatgacacca tggcacttgc tcccctcttt ggcccaccat
      541 tagaatcagc ttttgatgaa cagaagacag aagttctttt agatcagcct gagatatggg
      601 gtccaggcca accaattaat ccaagcacag agtcgccaaa gttaacaagg ccttttccca
      661 ctggaacacc tccaccactg cctccaaaac acgtaccagc cactccaccc cgaacaggct
      721 cccccttaac aactggacca ggtgcatcat cccctgctcg gccagccacc cccttggttc
      781 tttgcagcac cacgacccca cctccacctc ctccccggcc tccgtctcgg ccaaagctac
      841 ctccagggaa gcctggagtc ggagatgtgc cccgaccttt cagccctccc atccattctt
      901 ccagccctcc tccgatagca cccctagccc gagctgaaag cacttcttca atatcgtcca
      961 caaattcctt gagtgcagcc accaccccga cagttggttc ttccagggga cccagccccc
     1021 taaccatggg agcccaggac accctccctg ttgcagcagc atttacagaa acagtcaatg
     1081 cctacttcaa aggagcagat ccgagcaaat gtatcgtgaa gattactgga gaaatggtgt
     1141 tgtcctttcc tgccggcatc accagacact ttgccaacaa cccatcgcca gctgccctga
     1201 cttttcgggt gacaaatttc agcaggttag aacacgtcct gccaaatccc caacttctct
     1261 gctgtgataa tacccaaaat gatgccaata ccaaggaatt ctgggtaaac atgccaaatt
     1321 tgatgattca cctaaagaaa gtgtcggaac aaaagcccca ggctacatat tataacgtgg
     1381 atatgctcaa atatcaggtg tcagcccagg gcattcagtc cacacctctg aacctggcag
     1441 tgaactggcg atgtgagccg gcaagcaccg acctgcgcat agattacaaa tacaatacgg
     1501 atgcaatgac aacggccgtg gccctcaaca atgtgcagtt cctggtcccc atagatggag
     1561 gggtaaccaa gctccaggct gtgctcccac cagcagtctg gaatgctgaa cagcacagaa
     1621 tattgtggaa gattcctgat atttctcaga agtcagaaaa tggaggagtg ggctctttat
     1681 tggcaagatt tcagttatct gaaggcccaa gcaaaccttc cccattggtt gtgcagttta
     1741 caagtgaagg aagcaccctt tctggctgtg acattgaact tgttggagca gggtatagat
     1801 tttcactcat caagaaaagg tttgctgcag gaaaatactt ggcagataac taataaaatc
     1861 ttatgcaagg atttggagga ttcatataat ggagaactac tgtatgagaa acaggtttta
     1921 attttggttt gatgaaaaca aaccaaaatc tgcacttggg gtatatctgc tggaaatgtc
     1981 aatgactttc agcaatgatt tccctcacac aataccatga tgaccagtcc tacagtattt
     2041 gcttctaggt gtaatattgt taatggtttt aaaatgtaat tattgtattt gtaaattgta
     2101 ctcattccag taaggcagtt atacttgagt tttagcattt taccattcct gaaatggatg
     2161 taatttaaac tgtggtatgt aaatttaata gtagtactgt tgaatggcac aatgcttaca
     2221 gaggtagatt gcattttgtc aatatataaa atttaaatat aatattgata gctgtcataa
     2281 gggggtgcca cacacaaaga aaattcagtg gaaccagaaa aaaacttcct tttcttcggt
     2341 ccttagtatg ttttactcta gtgctaaata aaaattctat cttcaaatat ttagtgggtt
     2401 aaagtcagaa actatttcag aaaaaaaaaa ttctaaggta catgtgcata ttcaaagaaa
     2461 agcattaatt accacttttt aaaaagcttt tttttcaaac tgcaaatttc ataaaaatgc
     2521 aaactgtgta aacaggccct cttattttta taacttgtgt aaaaagggaa agcaattcat
     2581 atttaaagtt tatgaaatta taatcaagag taaagaagat gtcgaagtct taactacttc
     2641 cccctctctc cacagtttag cagatgtgga gattactgaa taatcagact aaaacaaaaa
     2701 ttgtgatttt aaaatttcaa gaatttccat agttgaactg gttaacaact tttgcacaat
     2761 aactctatac agagagtgcc tcccatccag catggggaat ggtaccaagc atcttcctcc
     2821 ttaccaatag gaactaaaac attgagtcta aatatcccag aaaaaaaagg ttttagtccc
     2881 ctacttaaat ccagaagaag aattttaatt gtcatcattt atataatttg ggaaggaaaa
     2941 aataagcttt ataaatcaaa ttctaaccac attattatgc aataaatttc cttttggata
     3001 agattcattg tatgtaacta taaatctttg ccattcttgg ggaatcaaaa agagagttat
     3061 caaaaatgta tgttatgatt tcattgttgc aaggtataat aaaaactgta attactca
//
LOCUS       XM_032612043            1568 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X11, mRNA.
ACCESSION   XM_032612043
VERSION     XM_032612043.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1568
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743491"
     CDS             318..1421
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X11"
                     /protein_id="XP_032467934.1"
                     /db_xref="GeneID:116743491"
                     /translation="MMEGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIQPSPHEPPYNN
                     KAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTKGKHFY
                     SSSESEEEEESHKKFNIKIKPLQAKDILKNAATVDELKASIGNIALSPSPVGAIKRNL
                     SSEEVARPRRSTPTPELISRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQPEIWGP
                     GQPINPSTESPKLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGASSPARPATPLV
                     LCSTTTPPPPPPRPPSRPKLPPGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSI
                     SSTNSLSAATTPTVGKNYLLSSNLFVVLTGYYL"
ORIGIN      
        1 gcaggctggc taccatgtga cgcggtccag agctgaaggg attggccgag gcagcgcagg
       61 cggtgcagct tggccggctt gctgttcctc tccctttctc tcgcagcatc ttcctgggag
      121 cctgtaggtg aagcagcacc acaagcatcc atggcctatc tttggggtta acacttgtct
      181 cctttggctt cagcatcgga cagagcagat ctctcgacag cagcagcagc gttgtgagga
      241 cttagctggg acctggaatc gtatcctcct gtcttttttc agactctttg gaaattaagg
      301 aatgcaattc tgccaccatg atggaaggat tgaaaaaacg tacaaggaag gcctttggaa
      361 tacggaagaa agaaaaggac actgattcta caggttcacc agatagagat ggaattcagc
      421 ccagcccaca tgaaccaccc tacaataaca aagcagagtg cgcacgtgaa ggaggaaaaa
      481 aagtttcgaa gaaaagcaat ggggcaccaa atggatttta tgcggaaatt gattgggaaa
      541 gatacaactc gcctgaactg gatgaggaag gctacagcat cagacctgag gaacccggct
      601 ctaccaaagg aaagcacttt tattcttcaa gcgaatcgga agaggaagaa gaatcacaca
      661 agaagtttaa tatcaagatt aagccattgc aagctaaaga cattcttaag aacgctgcaa
      721 ctgtagatga actgaaggca tcaataggca acattgcact ttccccatca ccagtgggtg
      781 caattaaaag gaacttatcc agtgaagaag tagcgagacc caggcgttcc acaccaactc
      841 cagaactcat aagcagaaaa cctccagatg acaccatggc acttgctccc ctctttggcc
      901 caccattaga atcagctttt gatgaacaga agacagaagt tcttttagat cagcctgaga
      961 tatggggtcc aggccaacca attaatccaa gcacagagtc gccaaagtta acaaggcctt
     1021 ttcccactgg aacacctcca ccactgcctc caaaacacgt accagccact ccaccccgaa
     1081 caggctcccc cttaacaact ggaccaggtg catcatcccc tgctcggcca gccaccccct
     1141 tggttctttg cagcaccacg accccacctc cacctcctcc ccggcctccg tctcggccaa
     1201 agctacctcc agggaagcct ggagtcggag atgtgccccg acctttcagc cctcccatcc
     1261 attcttccag ccctcctccg atagcacccc tagcccgagc tgaaagcact tcttcaatat
     1321 cgtccacaaa ttccttgagt gcagccacca ccccgacagt tggtaaaaat tatctcctct
     1381 cttctaatct gtttgtggtt ttgactggct attatttatg atctgaaaac cctaacgccc
     1441 aatgtttctg atcaaagttg gtttgctgtg tgttttgcta ctatcatctg actcttcttt
     1501 taaaagcacc ttctcagcaa agaaggcaaa gtgctttaag taaacaaata aaagaatgtg
     1561 aacacctg
//
LOCUS       XM_032612050            3760 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH3GL interacting endocytic adaptor 1
            (SGIP1), transcript variant X12, mRNA.
ACCESSION   XM_032612050
VERSION     XM_032612050.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3760
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3760
                     /gene="SGIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743491"
     CDS             9..2495
                     /gene="SGIP1"
                     /codon_start=1
                     /product="SH3-containing GRB2-like protein 3-interacting
                     protein 1 isoform X12"
                     /protein_id="XP_032467941.1"
                     /db_xref="GeneID:116743491"
                     /translation="MFKRGIQRGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIKKSNGA
                     PNGFYAEIDWERYNSPELDEEGYSIRPEEPGSTKGKHFYSSSESEEEEESHKKFNIKI
                     KPLQAKDILKNAATVDELKASIGNIALSPSPVRKSPRRSPGAIKRNLSSEEVARPRRS
                     TPTPELISRKPPDDTMALAPLFGPPLESAFDEQKTEVLLDQPEIWGPGQPINPSTESP
                     KLTRPFPTGTPPPLPPKHVPATPPRTGSPLTTGPGNDQAATEVKIEKLPSINDLDSIF
                     GPVLSPKSVAVNAEEKWVHFSDTSPERVTPELTPREKVVSPPAASDNPADSPPPGPPG
                     PPGPPGPPSPPRNVPSPLNLEEVQKKVAEQAFIKDDYLETISSPKDLGLGQRATPPAP
                     PPPTYRTVVSSPGPGSGSGTGTTSGASSPARPATPLVLCSTTTPPPPPPRPPSRPKLP
                     PGKPGVGDVPRPFSPPIHSSSPPPIAPLARAESTSSISSTNSLSAATTPTVVSEDDVF
                     YDKLPSFERRCETPAENEQPSLVWFDRGKFYLTFEGSSRGPSPLTMGAQDTLPVAAAF
                     TETVNAYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVTNFSRLEHV
                     LPNPQLLCCDNTQNDANTKEFWVNMPNLMIHLKKVSEQKPQATYYNVDMLKYQVSAQG
                     IQSTPLNLAVNWRCEPASTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVL
                     PPAVWNAEQHRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTL
                     SGCDIELVGAGYRFSLIKKRFAAGKYLADN"
     misc_feature    1689..2489
                     /gene="SGIP1"
                     /note="mu-homology domain (MHD) of Scr homology 3
                     (SH3)-domain growth factor receptor-bound 2 (GRB2)-like
                     (endophilin) interacting protein 1 (also known as
                     endophilin-3-interacting protein, SGIP1) and similar
                     proteins; Region: SGIP1_MHD; cd09266"
                     /db_xref="CDD:271172"
ORIGIN      
        1 tcgggggaat gttcaagaga ggtattcaga gaggattgaa aaaacgtaca aggaaggcct
       61 ttggaatacg gaagaaagaa aaggacactg attctacagg ttcaccagat agagatggaa
      121 ttaagaaaag caatggggca ccaaatggat tttatgcgga aattgattgg gaaagataca
      181 actcgcctga actggatgag gaaggctaca gcatcagacc tgaggaaccc ggctctacca
      241 aaggaaagca cttttattct tcaagcgaat cggaagagga agaagaatca cacaagaagt
      301 ttaatatcaa gattaagcca ttgcaagcta aagacattct taagaacgct gcaactgtag
      361 atgaactgaa ggcatcaata ggcaacattg cactttcccc atcaccagtg aggaaaagtc
      421 cgaggcgcag cccgggtgca attaaaagga acttatccag tgaagaagta gcgagaccca
      481 ggcgttccac accaactcca gaactcataa gcagaaaacc tccagatgac accatggcac
      541 ttgctcccct ctttggccca ccattagaat cagcttttga tgaacagaag acagaagttc
      601 ttttagatca gcctgagata tggggtccag gccaaccaat taatccaagc acagagtcgc
      661 caaagttaac aaggcctttt cccactggaa cacctccacc actgcctcca aaacacgtac
      721 cagccactcc accccgaaca ggctccccct taacaactgg accaggaaat gaccaggcag
      781 ccacagaggt caaaattgaa aaactaccat caatcaatga cttggacagc atttttggcc
      841 ctgtgttgtc ccccaagtct gttgctgtta atgctgaaga aaagtgggtc catttttctg
      901 atacatcccc ggaacgtgtt actccagagt tgactccaag ggaaaaggtg gtgtccccac
      961 cagctgcctc agacaaccca gctgactccc cgcctccggg ccccccgggc cctcctggtc
     1021 ccccaggacc tccaagtccc cctcgcaatg taccatcgcc actcaactta gaagaagtcc
     1081 agaagaaagt cgctgagcag gccttcatta aagatgatta cttagaaaca atctcatctc
     1141 ctaaagattt ggggctgggg cagagagcaa ctccgcctgc cccaccacca cccacctaca
     1201 ggactgtggt ttcatcccct ggacctggct cgggcagtgg tacggggacc accagtggtg
     1261 catcatcccc tgctcggcca gccaccccct tggttctttg cagcaccacg accccacctc
     1321 cacctcctcc ccggcctccg tctcggccaa agctacctcc agggaagcct ggagtcggag
     1381 atgtgccccg acctttcagc cctcccatcc attcttccag ccctcctccg atagcacccc
     1441 tagcccgagc tgaaagcact tcttcaatat cgtccacaaa ttccttgagt gcagccacca
     1501 ccccgacagt tgtgtcagaa gatgatgttt tttatgacaa actgccctcg tttgaaaggc
     1561 gctgtgaaac gcctgcagag aatgaacagc cttccctcgt ttggtttgac agaggaaagt
     1621 tttatttgac ttttgaaggt tcttccaggg gacccagccc cctaaccatg ggagcccagg
     1681 acaccctccc tgttgcagca gcatttacag aaacagtcaa tgcctacttc aaaggagcag
     1741 atccgagcaa atgtatcgtg aagattactg gagaaatggt gttgtccttt cctgccggca
     1801 tcaccagaca ctttgccaac aacccatcgc cagctgccct gacttttcgg gtgacaaatt
     1861 tcagcaggtt agaacacgtc ctgccaaatc cccaacttct ctgctgtgat aatacccaaa
     1921 atgatgccaa taccaaggaa ttctgggtaa acatgccaaa tttgatgatt cacctaaaga
     1981 aagtgtcgga acaaaagccc caggctacat attataacgt ggatatgctc aaatatcagg
     2041 tgtcagccca gggcattcag tccacacctc tgaacctggc agtgaactgg cgatgtgagc
     2101 cggcaagcac cgacctgcgc atagattaca aatacaatac ggatgcaatg acaacggccg
     2161 tggccctcaa caatgtgcag ttcctggtcc ccatagatgg aggggtaacc aagctccagg
     2221 ctgtgctccc accagcagtc tggaatgctg aacagcacag aatattgtgg aagattcctg
     2281 atatttctca gaagtcagaa aatggaggag tgggctcttt attggcaaga tttcagttat
     2341 ctgaaggccc aagcaaacct tccccattgg ttgtgcagtt tacaagtgaa ggaagcaccc
     2401 tttctggctg tgacattgaa cttgttggag cagggtatag attttcactc atcaagaaaa
     2461 ggtttgctgc aggaaaatac ttggcagata actaataaaa tcttatgcaa ggatttggag
     2521 gattcatata atggagaact actgtatgag aaacaggttt taattttggt ttgatgaaaa
     2581 caaaccaaaa tctgcacttg gggtatatct gctggaaatg tcaatgactt tcagcaatga
     2641 tttccctcac acaataccat gatgaccagt cctacagtat ttgcttctag gtgtaatatt
     2701 gttaatggtt ttaaaatgta attattgtat ttgtaaattg tactcattcc agtaaggcag
     2761 ttatacttga gttttagcat tttaccattc ctgaaatgga tgtaatttaa actgtggtat
     2821 gtaaatttaa tagtagtact gttgaatggc acaatgctta cagaggtaga ttgcattttg
     2881 tcaatatata aaatttaaat ataatattga tagctgtcat aagggggtgc cacacacaaa
     2941 gaaaattcag tggaaccaga aaaaaacttc cttttcttcg gtccttagta tgttttactc
     3001 tagtgctaaa taaaaattct atcttcaaat atttagtggg ttaaagtcag aaactatttc
     3061 agaaaaaaaa aattctaagg tacatgtgca tattcaaaga aaagcattaa ttaccacttt
     3121 ttaaaaagct tttttttcaa actgcaaatt tcataaaaat gcaaactgtg taaacaggcc
     3181 ctcttatttt tataacttgt gtaaaaaggg aaagcaattc atatttaaag tttatgaaat
     3241 tataatcaag agtaaagaag atgtcgaagt cttaactact tccccctctc tccacagttt
     3301 agcagatgtg gagattactg aataatcaga ctaaaacaaa aattgtgatt ttaaaatttc
     3361 aagaatttcc atagttgaac tggttaacaa cttttgcaca ataactctat acagagagtg
     3421 cctcccatcc agcatgggga atggtaccaa gcatcttcct ccttaccaat aggaactaaa
     3481 acattgagtc taaatatccc agaaaaaaaa ggttttagtc ccctacttaa atccagaaga
     3541 agaattttaa ttgtcatcat ttatataatt tgggaaggaa aaaataagct ttataaatca
     3601 aattctaacc acattattat gcaataaatt tccttttgga taagattcat tgtatgtaac
     3661 tataaatctt tgccattctt ggggaatcaa aaagagagtt atcaaaaatg tatgttatga
     3721 tttcattgtt gcaaggtata ataaaaactg taattactca
//
LOCUS       XM_032612064             611 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A11
            (S100A11), mRNA.
ACCESSION   XM_032612064
VERSION     XM_032612064.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..611
                     /gene="S100A11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 2 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743531"
     CDS             132..443
                     /gene="S100A11"
                     /codon_start=1
                     /product="protein S100-A11"
                     /protein_id="XP_032467955.1"
                     /db_xref="GeneID:116743531"
                     /translation="MAKTSSPTETERCIESLIAVFQRHAGRDGNNSKLSKAEFLIFMN
                     TELGAFTKNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLALACHDSFIKSTSSQ
                     K"
     misc_feature    150..416
                     /gene="S100A11"
                     /note="S-100A11 domain found in proteins similar to
                     S100A11. S100A11 is a member of the S-100 domain family
                     within EF-hand Ca2+-binding proteins superfamily. Note
                     that the S-100 hierarchy, to which this S-100A11 group
                     belongs, contains only S-100 EF-hand...; Region: S-100A11;
                     cd05023"
                     /db_xref="CDD:240150"
     misc_feature    order(153..155,159..164,168..185,189..197,225..227,
                     255..257,267..281,360..365,372..377,381..389,393..398,
                     405..416)
                     /gene="S100A11"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240150"
     misc_feature    order(204..206,213..215,219..221,228..230,243..245,
                     333..335,339..341,345..347,351..353,366..368)
                     /gene="S100A11"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240150"
     misc_feature    order(270..272,276..281,288..293,306..308,390..392,
                     399..404,411..416)
                     /gene="S100A11"
                     /note="annexin I binding site [active]"
                     /db_xref="CDD:240150"
ORIGIN      
        1 tgagtcaggc ggaagccacg cggggcggag ccgggtgggg ccggacctgg gaggtagcag
       61 acccggcccg ccgcccagtt cgcgcctagc cgctcctcgc tcgcacaccc gtgcttcgct
      121 cctctccgaa catggcaaaa acatccagcc ctacagagac tgaacggtgc atcgagtctc
      181 tgattgctgt tttccaaagg catgctggaa gggatggtaa caacagcaaa ctctccaagg
      241 ccgagttcct tatcttcatg aatacagagc tgggtgcctt cacaaagaac cagaaggacc
      301 ctggtgtcct tgaccgcatg atgaagaagc tggacctcga ctctgatgga cagttagatt
      361 tccaagaatt tcttaatctt attggcggcc tggccctagc ttgccatgac tcctttatta
      421 agtctacctc ttcccagaag taaattggag gagcctttgg gcctggcctc cagccccact
      481 ccctttcctt cagcctccca attatcatct acccctcaca gcccacacac accctgagcc
      541 cagtgtaccc accaccccat gcaggccact cctgctggta gtaataaaac aatattgttt
      601 tttaaagcac a
//
LOCUS       XM_032612078            2097 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus palmdelphin (PALMD), transcript variant
            X1, mRNA.
ACCESSION   XM_032612078
VERSION     XM_032612078.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2097
                     /gene="PALMD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 9 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743536"
     CDS             93..1787
                     /gene="PALMD"
                     /codon_start=1
                     /product="palmdelphin isoform X1"
                     /protein_id="XP_032467969.1"
                     /db_xref="GeneID:116743536"
                     /translation="MQLKEERQASDLTQSRMEEAELVKERLQAITDKRKIQEEISQKR
                     LKIEEEKLKHQHLKKKALREKWLLDGISSGKEQEEMKKQNQQDQHQIQVLEQSILRLE
                     KEIQDLEKAELQISTNEEAILKKLKSVERTTEDIIRSVKVEKEETSGESIEDIYANIP
                     DLPKSYIPSRLRKERNEGIEDDVQNRKALYAMEIKVEKDLKTGESTVLSSIPLPSDDF
                     KGTGIKVYDDGQKSVYAVSSNHSAAYNGTDGLAPVEVEELLRQASERNSKSPTEYHEP
                     VYANPFCRPTTPQREKVTPGPNFQERIKIKANGLGNDVNRSTRNMDNGLSEESGNSFD
                     HISTVRPIPQPRSMLQQAEETPHTQQKRLMTSWEESNVMQDRYAPSPKAGLSPSEALV
                     GKSERQGSPTCQEDEEDIRYNIVHSLPSDMDEKEPVTMIFMGYQQAEDNEEEKKLLTG
                     YDGVIHAELVVIDEEEGEGEAEKLSYHPIAPYSQVFQPAKPIPLPRKRSEVNPHENRN
                     HKSPHKNSISLKEQEESLGSPVHHSPLDVQRAGDGTEDPSLTALRMRMAKLGKKVI"
     misc_feature    189..1481
                     /gene="PALMD"
                     /note="MIU-linker domain found in unconventional
                     myosin-VI; Region: MYO6_MIU_linker; cl46503"
                     /db_xref="CDD:480843"
ORIGIN      
        1 aggaggggaa gggaaaggca aggacagcct gatgtaagtt taccactata ttaaattcta
       61 aagttactct agaattttgt attcttatct aaatgcaatt aaaggaagaa aggcaagcaa
      121 gtgacttgac ccagtcaaga atggaagaag ctgagctggt gaaggagaga ctccaggcca
      181 tcacagataa aagaaaaata caggaagaaa tctcacagaa gcgtttgaaa atagaggaag
      241 aaaaactaaa gcaccagcat ttgaagaaaa aggccttgag ggagaaatgg cttctagatg
      301 gaatcagcag tggaaaagaa caggaagaga tgaagaaaca aaatcaacaa gaccaacacc
      361 agatccaggt tctagaacaa agtatcctca gacttgagaa agagatccaa gatcttgaaa
      421 aagctgaact gcaaatctca accaatgaag aggcaatttt aaagaaacta aaatcagttg
      481 agaggacaac agaagacata atacggtctg tgaaggtgga aaaggaagaa acatcaggag
      541 agtcaattga agacatctat gctaatatcc ctgaccttcc aaaatcctac ataccttcca
      601 gattaaggaa ggaaagaaat gaaggaatag aagatgatgt acaaaataga aaagctttgt
      661 atgccatgga aatcaaagtt gaaaaggact tgaagaccgg agaaagtaca gtcctgtctt
      721 caatacctct cccatcagat gactttaaag gtacagggat aaaagtttat gacgatgggc
      781 aaaagtcagt atatgcagta agctctaatc acagtgcagc atacaacggc accgacggcc
      841 tggcaccagt tgaagtagag gaacttttaa gacaagcttc agagagaaat tctaaatccc
      901 caacagagta tcatgagcct gtatatgcca atccgttttg cagacctaca acaccacaga
      961 gagagaaggt aactcctgga ccaaacttcc aagaaaggat aaagattaaa gctaacggac
     1021 tgggcaatga tgtgaataga tccacacgca acatggacaa tggactttca gaggagagcg
     1081 gcaacagctt cgatcacatc agtaccgttc ggccaatacc tcaaccccga tcaatgcttc
     1141 aacaagcaga ggagacaccc cacacccagc aaaagaggct gatgacttct tgggaagaat
     1201 caaatgtaat gcaggacagg tatgctccct ctccaaaggc gggactgagt cccagcgaag
     1261 cactagttgg gaagtcagaa cgtcagggtt cacctacttg ccaggaggat gaggaagaca
     1321 ttagatataa tattgttcat tccctgcctt ctgacatgga tgagaaagaa cccgtgacaa
     1381 tgattttcat gggttatcag caggcagaag acaatgagga agaaaagaag cttctgacgg
     1441 gatatgacgg ggtcatccat gctgagctgg ttgtgattga tgaggaggag ggtgaaggag
     1501 aagctgagaa actatcctac catcccatag ccccctacag tcaggttttc cagcctgcca
     1561 aaccaatacc acttccaaga aagagatcag aagttaatcc ccatgaaaac agaaaccata
     1621 aatctcccca caaaaattcc atatctctga aagagcaaga agaaagctta ggcagccctg
     1681 tccaccattc tccacttgac gttcagagag caggagatgg gactgaggat ccctccttaa
     1741 cagccttaag gatgagaatg gcaaagctgg ggaaaaaggt tatctgagag gtgtaccatc
     1801 tacgtaaaca ccctttgaag aagaaactaa gaaacatttg caaatttctc ttctggatat
     1861 tttgtttctt tttcctgaga tacaaaaaat tataattata cccatattaa gccatgtgaa
     1921 taagcaatag tcattatttg aaacaaatac caaaaaagct ggggagaaca aactcttaac
     1981 ttttccagtt acttgacatg attcagtggg ggggaaacca acatattttt attgtattga
     2041 taccaaagca tttctaataa gagcttgtta aatttaagaa taaagttatt taaaata
//
LOCUS       XM_032612081            2106 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus palmdelphin (PALMD), transcript variant
            X2, mRNA.
ACCESSION   XM_032612081
VERSION     XM_032612081.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2106
                     /gene="PALMD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 9 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743536"
     CDS             150..1796
                     /gene="PALMD"
                     /codon_start=1
                     /product="palmdelphin isoform X2"
                     /protein_id="XP_032467972.1"
                     /db_xref="GeneID:116743536"
                     /translation="MEEAELVKERLQAITDKRKIQEEISQKRLKIEEEKLKHQHLKKK
                     ALREKWLLDGISSGKEQEEMKKQNQQDQHQIQVLEQSILRLEKEIQDLEKAELQISTN
                     EEAILKKLKSVERTTEDIIRSVKVEKEETSGESIEDIYANIPDLPKSYIPSRLRKERN
                     EGIEDDVQNRKALYAMEIKVEKDLKTGESTVLSSIPLPSDDFKGTGIKVYDDGQKSVY
                     AVSSNHSAAYNGTDGLAPVEVEELLRQASERNSKSPTEYHEPVYANPFCRPTTPQREK
                     VTPGPNFQERIKIKANGLGNDVNRSTRNMDNGLSEESGNSFDHISTVRPIPQPRSMLQ
                     QAEETPHTQQKRLMTSWEESNVMQDRYAPSPKAGLSPSEALVGKSERQGSPTCQEDEE
                     DIRYNIVHSLPSDMDEKEPVTMIFMGYQQAEDNEEEKKLLTGYDGVIHAELVVIDEEE
                     GEGEAEKLSYHPIAPYSQVFQPAKPIPLPRKRSEVNPHENRNHKSPHKNSISLKEQEE
                     SLGSPVHHSPLDVQRAGDGTEDPSLTALRMRMAKLGKKVI"
     misc_feature    198..1490
                     /gene="PALMD"
                     /note="MIU-linker domain found in unconventional
                     myosin-VI; Region: MYO6_MIU_linker; cl46503"
                     /db_xref="CDD:480843"
ORIGIN      
        1 acatttaaac cacactgaac acagccggtg gaccaagttc ttaacagagt cacgttaatg
       61 cctttaattt ctccatgacc taaagattcc aaaatttgaa acaaactgct gaagtaggag
      121 gggaagggaa aggcaaggac agcctgataa tggaagaagc tgagctggtg aaggagagac
      181 tccaggccat cacagataaa agaaaaatac aggaagaaat ctcacagaag cgtttgaaaa
      241 tagaggaaga aaaactaaag caccagcatt tgaagaaaaa ggccttgagg gagaaatggc
      301 ttctagatgg aatcagcagt ggaaaagaac aggaagagat gaagaaacaa aatcaacaag
      361 accaacacca gatccaggtt ctagaacaaa gtatcctcag acttgagaaa gagatccaag
      421 atcttgaaaa agctgaactg caaatctcaa ccaatgaaga ggcaatttta aagaaactaa
      481 aatcagttga gaggacaaca gaagacataa tacggtctgt gaaggtggaa aaggaagaaa
      541 catcaggaga gtcaattgaa gacatctatg ctaatatccc tgaccttcca aaatcctaca
      601 taccttccag attaaggaag gaaagaaatg aaggaataga agatgatgta caaaatagaa
      661 aagctttgta tgccatggaa atcaaagttg aaaaggactt gaagaccgga gaaagtacag
      721 tcctgtcttc aatacctctc ccatcagatg actttaaagg tacagggata aaagtttatg
      781 acgatgggca aaagtcagta tatgcagtaa gctctaatca cagtgcagca tacaacggca
      841 ccgacggcct ggcaccagtt gaagtagagg aacttttaag acaagcttca gagagaaatt
      901 ctaaatcccc aacagagtat catgagcctg tatatgccaa tccgttttgc agacctacaa
      961 caccacagag agagaaggta actcctggac caaacttcca agaaaggata aagattaaag
     1021 ctaacggact gggcaatgat gtgaatagat ccacacgcaa catggacaat ggactttcag
     1081 aggagagcgg caacagcttc gatcacatca gtaccgttcg gccaatacct caaccccgat
     1141 caatgcttca acaagcagag gagacacccc acacccagca aaagaggctg atgacttctt
     1201 gggaagaatc aaatgtaatg caggacaggt atgctccctc tccaaaggcg ggactgagtc
     1261 ccagcgaagc actagttggg aagtcagaac gtcagggttc acctacttgc caggaggatg
     1321 aggaagacat tagatataat attgttcatt ccctgccttc tgacatggat gagaaagaac
     1381 ccgtgacaat gattttcatg ggttatcagc aggcagaaga caatgaggaa gaaaagaagc
     1441 ttctgacggg atatgacggg gtcatccatg ctgagctggt tgtgattgat gaggaggagg
     1501 gtgaaggaga agctgagaaa ctatcctacc atcccatagc cccctacagt caggttttcc
     1561 agcctgccaa accaatacca cttccaagaa agagatcaga agttaatccc catgaaaaca
     1621 gaaaccataa atctccccac aaaaattcca tatctctgaa agagcaagaa gaaagcttag
     1681 gcagccctgt ccaccattct ccacttgacg ttcagagagc aggagatggg actgaggatc
     1741 cctccttaac agccttaagg atgagaatgg caaagctggg gaaaaaggtt atctgagagg
     1801 tgtaccatct acgtaaacac cctttgaaga agaaactaag aaacatttgc aaatttctct
     1861 tctggatatt ttgtttcttt ttcctgagat acaaaaaatt ataattatac ccatattaag
     1921 ccatgtgaat aagcaatagt cattatttga aacaaatacc aaaaaagctg gggagaacaa
     1981 actcttaact tttccagtta cttgacatga ttcagtgggg gggaaaccaa catattttta
     2041 ttgtattgat accaaagcat ttctaataag agcttgttaa atttaagaat aaagttattt
     2101 aaaata
//
LOCUS       XM_032612105            3055 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lin-9 DREAM MuvB core complex component
            (LIN9), mRNA.
ACCESSION   XM_032612105
VERSION     XM_032612105.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3055
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3055
                     /gene="LIN9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 11
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743555"
     CDS             1..1677
                     /gene="LIN9"
                     /codon_start=1
                     /product="protein lin-9 homolog"
                     /protein_id="XP_032467996.1"
                     /db_xref="GeneID:116743555"
                     /translation="MHRGGQPLKKRRGSFKMAELDQLPDESSSAKALVSLKEGSLSNT
                     WNEKYSSLQKTPVWKGRNTGSAVEMPFRNSKRSRLFSDEDDRQINTRSPKRNQRVAMV
                     PQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCV
                     CLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRK
                     VADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRAG
                     LGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPITDNDPLL
                     GQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSY
                     SMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRR
                     CEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLT
                     DSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD"
     misc_feature    424..741
                     /gene="LIN9"
                     /note="Region: DIRP; pfam06584"
                     /db_xref="CDD:461955"
     misc_feature    847..1668
                     /gene="LIN9"
                     /note="LIN9 C-terminal; Region: LIN9_C; pfam19438"
                     /db_xref="CDD:437270"
ORIGIN      
        1 atgcaccgcg gcgggcagcc tttgaaaaag cggcgcggct cgttcaagat ggcggagctc
       61 gaccagttgc ctgacgagag ctcttcagcg aaagcccttg tcagtttaaa agagggaagc
      121 ttatctaaca catggaatga aaagtacagt tctttacaaa aaacacctgt ttggaaaggc
      181 aggaatacag gctctgctgt ggaaatgcct ttcagaaatt caaaacgaag tcggctcttt
      241 tctgatgaag atgacagaca aataaataca aggtcaccta aaagaaatca gagggtggca
      301 atggttccac agaaatttac agcaacaatg tcaacaccag ataagaaggc ctcacagaag
      361 attggttttc gattacgtaa cttactcaag cttcccaaag cacataagtg gtgcatatat
      421 gagtggttct actcaaatat agataaacca ctttttgaag gcgacaatga cttctgtgtt
      481 tgtctaaagg aatcttttcc taatttgaaa acaagaaagt taacaagagt agaatgggga
      541 aaaatcaggc ggcttatggg gaaaccacgg agatgttctt ctgcattttt tgaggaagag
      601 agatcagcat taaaacagaa acggcagaaa ataaggctct tacaacaaag gaaagttgcg
      661 gatgtttcac agttcaagga tctcccagat gaaattcctt tgcccctggt tattggaacc
      721 aaagttacag cacgattacg tggtgttcat gatggtctgt tcactggaca gatagatgct
      781 gtggatactc ttaatgctac ttatagagta acttttgata gagcagggct tggaactcat
      841 actatccctg actatgaagt tcttagtaat gagcctcatg agacgatgcc tattgctgcc
      901 tttggacaaa aacagcgacc ttctcgattt tttatgactc caccacggtt acattatact
      961 cctcctctcc agtcaccaat tacagataat gaccccttat taggacaatc accttggaga
     1021 agtaaaattt ctggctctga cacagaaacg ttaggtggtt ttccagtaga gttccttatc
     1081 caagtgacca gattatcaaa aattctcatg attaaaaagg agcatatcaa gaaattaagg
     1141 gaaatgaaca cagaagcaga aaaactgaaa tcatattcca tgcccattag cattgaattt
     1201 cagcggagat atgcaacaat tgttctagag cttgaacaac tgaacaagga cctaaacaaa
     1261 gttttgcata aagttcaaca gtactgctat gagcttgctc cagaccaagg gctccagccg
     1321 gcagatcagc cgacagatat gagacgaagg tgtgaggaag aagcacagga aattgttcgg
     1381 catgcaaatt cctcaacagg acagccctgt gttgaaaatg aaaatctgac agacttaatc
     1441 tccaggctta cagctatttt attacaaatt aagtgtctgg cagaaggagg agacctgaat
     1501 tcctttgaat ttaaatcact tacagattca ttaaatgata tcaagagtac aatagatgct
     1561 tctaatatca gttgctttca gaataatgta gaaattcatg ttgcacatat tcagagtggc
     1621 ctgagccaga tgggaaactt acatgccttt gcagcaaata acaccaacag agactgaata
     1681 gaagatttca ttattccaac tgcataggac attgtttttg agaagttctc ttcctttata
     1741 taggcttcca acaccaaata acctaactgc tggaaaacaa gggaaactta aatctccaaa
     1801 taaggcattt taatatactg tactgcttct taaaccagca ttgctgacca gcattatatt
     1861 tatttttctt ttattactca actgcagtag cattgcttat gttacatatg tttattagca
     1921 agtactttta aactgaaaat gtctgaacat aatataattt catggaagga tatgttgacc
     1981 atctttttaa cttgcatgaa ttcaacccaa cccatgcaga caactactgc aatggagaac
     2041 gtgaagaaac atggtctttt tgtgcattat gcatggcaat gtggaaattc catctaggaa
     2101 attacaactc cagttcattt agttgatcac cacctcagtc ttcaaaagat aacatcatga
     2161 gatatgggaa gtcctcattt ttaggaagcc actggaatat aggtgggaaa tatggacttt
     2221 acaagtatat atgatatata cttgcaatgt gacatggttc tatagatcat tttataataa
     2281 taaatatttt aatttatcat aatttataaa agaaaccttt gttgtttgtc tgttgaaaga
     2341 aaatgaagga gcaggaaaga aacattactg caagatgctt aatttcagca aatggatttg
     2401 gcatgtctct tcccatcaat tcaggggaag atgtgctatt gttatgggat ttatttttta
     2461 aaaaaaaaag actgataaca cactattttc atattttttg tttatttgca caactcttga
     2521 accagattac tggttaaaat ccaacagtta cacaattttt aaagtaaaaa gattttataa
     2581 ggaaaacaaa tataatagcc agtgctagga aaaggagaaa aaggtttgta tttggttgtg
     2641 ggcttttttg gtttttggtt ttttaaggaa aaccctgcct aagatgttaa tcttgtaaaa
     2701 agtgtgtatt tggaattttc tctgttttaa tatagaatat tataaagtca aaataaaatg
     2761 aattgttttc agatttggag ttaaagatat agctgtagaa gtggctttga ttcttttaga
     2821 tgtctcataa aatgagactt tttatatgtt aatgtataat aaaactgaaa caagattatt
     2881 ttccatttga aatttttgta tagtttaaaa atgcttccat attctttgtt ggtattgtgc
     2941 cactgcagag ctttagtgca gagtttatat ttagctaaac tgttatgtta attaagaaat
     3001 gcataaatct tttattctta atatttgtaa ttctaaataa attgatctat gaaaa
//
LOCUS       XM_032612121            1338 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat, SAM and U-box
            domain-containing protein 1-like (LOC116743560), mRNA.
ACCESSION   XM_032612121
VERSION     XM_032612121.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-177               VOSU01000011.1     162590354-162590530
            178-178             "N"                1-1
            179-675             VOSU01000011.1     162590531-162591027
            676-676             "N"                1-1
            677-1338            VOSU01000011.1     162591028-162591689
FEATURES             Location/Qualifiers
     source          1..1338
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1338
                     /gene="LOC116743560"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 Proteins, and 79% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743560"
     CDS             1..1338
                     /gene="LOC116743560"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: WD repeat, SAM and U-box
                     domain-containing protein 1-like"
                     /protein_id="XP_032468012.1"
                     /db_xref="GeneID:116743560"
                     /translation="MVKLIHTLADHDDDVNCCAFSSSLLATCSLDKPIRLYSLSDFSE
                     LPHSPLKFHTSAVHCXCFSASGHILASFSTDGTTVLWDTQNGQTLAVMEQPSGSPVRV
                     CQFSPDSTCLISGAADGTVVLWNAQSYKLYRCASVKDGSLVACAFSPNGNLFVTGSSC
                     GDLTVWDDKMRCLHSEKAHNLGFTCCDFSSQPVSGGEQGLQFFRLASCGQDCQIKIWV
                     ISFTHTLXSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNILLLATGSMDKTVSI
                     WQFDLEAPCQARIAEDQPKQFTEDWSEDDVSNWFCAQDLKDLVGIFKMNNIDGRELLN
                     LTKESLADDLKIESLGLRSKVLQKIEELRTKMKTLSSGIPDEFICPITRELMKDPVIA
                     SDGYSYEKEAMENCISKKKRTSPMTNLVLPSLVLIPNRTLKMAIDRWLETHQK"
     misc_feature    <7..840
                     /gene="LOC116743560"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    46..156
                     /gene="LOC116743560"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    169..279
                     /gene="LOC116743560"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    301..408
                     /gene="LOC116743560"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    427..531
                     /gene="LOC116743560"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    553..741
                     /gene="LOC116743560"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    757..831
                     /gene="LOC116743560"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    889..1101
                     /gene="LOC116743560"
                     /note="SAM domain of WDSUB1 proteins; Region: SAM_WDSUB1;
                     cd09505"
                     /db_xref="CDD:188904"
     misc_feature    1117..1335
                     /gene="LOC116743560"
                     /note="U-box domain; Region: U-box; pfam04564"
                     /db_xref="CDD:398320"
ORIGIN      
        1 atggtgaaac taattcacac gttagcggat catgatgatg atgtcaactg ctgtgccttc
       61 tcctcttccc tcttggccac ttgctccttg gacaaaccaa ttcgcctgta ctccctgagt
      121 gacttcagtg aactgccaca ctctccattg aagtttcaca cctctgctgt ccactgcntg
      181 tgtttctctg cttcagggca tattttggct tcattttcaa cagatggtac cactgtctta
      241 tgggatactc aaaacggaca gactttggca gtgatggaac agcccagtgg tagccccgtg
      301 agggtttgcc agttttcccc agactccact tgtttgatat caggggcagc tgatggaact
      361 gttgttttgt ggaatgcaca gtcatacaag ttatatagat gtgctagtgt taaggatggc
      421 tccttggtgg cctgtgcatt ttctcctaat ggaaacctct ttgtcactgg ctcctcatgt
      481 ggagatttaa cagtgtggga tgataaaatg aggtgtctgc atagtgaaaa agcacataat
      541 cttggattta cctgctgcga tttttcttca cagccagtct ctggtggaga acaaggtctt
      601 cagttctttc gactggcatc atgtggtcag gattgccaga tcaaaatttg ggttatttcc
      661 tttacccata ccttangatc agtggataag tctgtcatag tgtatgatac taatactgag
      721 aatatacttc acaccttgac tcagcacacc aggtatgtca caacttgtgc ctttgcaccc
      781 aatatccttt tacttgctac tggttcaatg gacaaaacag tgagtatctg gcagtttgac
      841 ctggaagcac cttgccaagc aaggatcgca gaagatcaac caaagcaatt tactgaagat
      901 tggtcagagg acgatgtctc aaactggttt tgtgcacaag atttaaaaga ccttgttggt
      961 attttcaaaa tgaataacat tgatgggcga gaactgttga atcttacaaa agaaagtcta
     1021 gctgatgatt tgaaaattga atctctaggg ctgcgtagta aagttctgca gaaaattgaa
     1081 gagctcagga caaagatgaa aaccctttct tctggaattc ctgatgaatt tatatgtcca
     1141 ataactaggg agcttatgaa agatcctgtc attgcatcag atggctattc atacgaaaag
     1201 gaagcaatgg aaaattgtat cagcaaaaag aaacgtacga gtcccatgac aaatcttgtt
     1261 cttccttctt tggtacttat accaaatagg actctgaaaa tggccattga tcgatggctg
     1321 gagacacatc aaaaataa
//
LOCUS       XM_032612135            2142 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus late endosomal/lysosomal adaptor, MAPK
            and MTOR activator 5 (LAMTOR5), transcript variant X1, mRNA.
ACCESSION   XM_032612135
VERSION     XM_032612135.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2142
                     /gene="LAMTOR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743563"
     CDS             1587..1862
                     /gene="LAMTOR5"
                     /codon_start=1
                     /product="ragulator complex protein LAMTOR5"
                     /protein_id="XP_032468026.1"
                     /db_xref="GeneID:116743563"
                     /translation="MEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLSDEHAGV
                     ISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS"
     misc_feature    1587..1850
                     /gene="LAMTOR5"
                     /note="Ragulator complex protein LAMTOR5; Region: LAMTOR5;
                     pfam16672"
                     /db_xref="CDD:406957"
ORIGIN      
        1 ctggggcagg acttcagcag caagcaggcc ggctcctcac attttctgat gctacctttt
       61 aagggtagtt ttaaacagct ttttctaaaa tttaaatggc ccatattatg tgaccccgag
      121 gttaatataa atcatttctc tagggcagga gtctaaaact cctgaattac aatattcaag
      181 actggaattt taaggcagct gcaagtttct caccatcaca gctagggaat gaagagggac
      241 tgtgaattca agtcgagaga agccttaaag ctgggcccca gaacagaagg tggactgtga
      301 gtaaaagctg gaggtaagag ggttggagaa aaggtagctc caggagtgat gttaggagga
      361 cttaagcaca aggagtgggt attggcttat gggcgatggg tgacctctgg acatactccc
      421 attttcatca aaatgctacc aatctgagtg taaattgtta ccacctttct tcggggcaat
      481 ttgtaagtgt attttaaaag ccttaaaaat gtcaatatcc tttgacccaa taattccatt
      541 ctagtaactc ataaggaaaa ttttaaactg cacaaatatt tggctataag gatattcatc
      601 cagcatttgt aatagccaaa gaacccaaaa taacaataaa actataagca acctaactac
      661 acattgatat gggttggtta aatcaattaa cagttataat atggactatt ttgtaagtgt
      721 tacagaggtt gtgtaaatga atacttactg acatgaaaag acatttatgc taaattctgt
      781 gaaaagggtc agctacagaa ttgtatgtcc agtatgtgtg tcaattttgc ttaaaaaaga
      841 aacaacatta aaagcataca tctgcaaaga caattggctg aaagaatatt ctccaaggga
      901 ttaatagtca tctctggaca gaggctatgg gtgggctttc tttccttatt ttttaaaact
      961 gcttttataa ttaacttttt aaaagattat ttatttatca caagtgacac gttctttccc
     1021 aagccctccc caaaggggaa gaaccaacgt tttcgttaaa atcccgacac tttccccata
     1081 cctattagca ttgttccatc tcgtcctcta gtccctgtgt ccagtctttt cccctataag
     1141 cctggggacc cttcaccggg gtcctgtgtc tctcttgtct ctctctgccc caccgcctgt
     1201 atgagacccc gtcggaccgc ccgggttgtt gtaaaacttc aacagggtct ggcccgactt
     1261 cttggagtcg gtggaattgt aatccaaagg tctgtatgga ggagacaaag ggacaggcca
     1321 ggagggcggc tccgagggac gactgcagac ctccctccca cggcggcatt ccgcgccgtc
     1381 ccctcgcctg ttgcacaggc agcagaacct ccgcccggct cgcggtggcg ggcgcgtaaa
     1441 gatgtcatcc tggacacaac gcgaaggctg cgccacgaag tttgtccctt tggaggcacc
     1501 gttcctgccc acggcccgct cgcgtcatgt gaacgaccga ggggcacccg agaccagcgg
     1561 cggagaagga ggcgactcgc ggcggtatgg aggcaacttt agagcagcac ttggaggata
     1621 caatgaagaa tccatccatt gttggagtcc tgtgcacaga ttcacaagga ctcaatttgg
     1681 gctgccgcgg aaccctgtca gatgagcatg ctggggtgat atctgtttta gcccagcaag
     1741 cagctaagct aacctcagac cccactgata ttcctgtggt gtgtctagaa tcagataatg
     1801 ggaacattat gatccagaaa cacgatggca tcacagtggc agtgcacaaa atggcctctt
     1861 gacatcttgt atcagttctc cagcagcttg tcacggggac tcgatcgtac cttatgttaa
     1921 ttatcttata gagctattag agttccagta attaggccat tcatgtaatg tgcattaggc
     1981 acttttctat taattttaga gtaagctgct ttttgacact ctgacttatc aaaattgact
     2041 tatcaaaata ctagttaagg gaagtatgtt ttgaagcaag tgtaggtcac tttgtataca
     2101 gaatttcgtt atgtttaata aaactggttg gaggaaagct tg
//
LOCUS       XR_004346810            2052 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus late endosomal/lysosomal adaptor, MAPK
            and MTOR activator 5 (LAMTOR5), transcript variant X2, misc_RNA.
ACCESSION   XR_004346810
VERSION     XR_004346810.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2052
                     /gene="LAMTOR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743563"
     misc_RNA        1..2052
                     /gene="LAMTOR5"
                     /product="late endosomal/lysosomal adaptor, MAPK and MTOR
                     activator 5, transcript variant X2"
                     /db_xref="GeneID:116743563"
ORIGIN      
        1 caggacttca gcagcaagca ggccggctcc tcacattttc tgatgctacc ttttaagggg
       61 caggagtcta aaactcctga attacaatat tcaagactgg aattttaagg cagctgcaag
      121 tttctcacca tcacagctag ggaatgaaga gggactgtga attcaagtcg agagaagcct
      181 taaagctggg ccccagaaca gaaggtggac tgtgagtaaa agctggaggt aagagggttg
      241 gagaaaaggt agctccagga gtgatgttag gaggacttaa gcacaaggag tgggtattgg
      301 cttatgggcg atgggtgacc tctggacata ctcccatttt catcaaaatg ctaccaatct
      361 gagtgtaaat tgttaccacc tttcttcggg gcaatttgta agtgtatttt aaaagcctta
      421 aaaatgtcaa tatcctttga cccaataatt ccattctagt aactcataag gaaaatttta
      481 aactgcacaa atatttggct ataaggatat tcatccagca tttgtaatag ccaaagaacc
      541 caaaataaca ataaaactat aagcaaccta actacacatt gatatgggtt ggttaaatca
      601 attaacagtt ataatatgga ctattttgta agtgttacag aggttgtgta aatgaatact
      661 tactgacatg aaaagacatt tatgctaaat tctgtgaaaa gggtcagcta cagaattgta
      721 tgtccagtat gtgtgtcaat tttgcttaaa aaagaaacaa cattaaaagc atacatctgc
      781 aaagacaatt ggctgaaaga atattctcca agggattaat agtcatctct ggacagaggc
      841 tatgggtggg ctttctttcc ttatttttta aaactgcttt tataattaac tttttaaaag
      901 attatttatt tatcacaagt gacacgttct ttcccaagcc ctccccaaag gggaagaacc
      961 aacgttttcg ttaaaatccc gacactttcc ccatacctat tagcattgtt ccatctcgtc
     1021 ctctagtccc tgtgtccagt cttttcccct ataagcctgg ggacccttca ccggggtcct
     1081 gtgtctctct tgtctctctc tgccccaccg cctgtatgag accccgtcgg accgcccggg
     1141 ttgttgtaaa acttcaacag ggtctggccc gacttcttgg agtcggtgga attgtaatcc
     1201 aaaggtctgt atggaggaga caaagggaca ggccaggagg gcggctccga gggacgactg
     1261 cagacctccc tcccacggcg gcattccgcg ccgtcccctc gcctgttgca caggcagcag
     1321 aacctccgcc cggctcgcgg tggcgggcgc gtaaagatgt catcctggac acaacgcgaa
     1381 ggctgcgcca cgaagtttgt ccctttggag gcaccgttcc tgcccacggc ccgctcgcgt
     1441 catgtgaacg accgaggggc acccgagacc agcggcggag aaggaggcga ctcgcggcgg
     1501 tatggaggca actttagagc agcacttgga ggatacaatg aagaatccat ccattgttgg
     1561 agtcctgtgc acagattcac aaggactcaa tttgggctgc cgcggaaccc tgtcagatga
     1621 gcatgctggg gtgatatctg ttttagccca gcaagcagct aagctaacct cagaccccac
     1681 tgatattcct gtggtgtgtc tagaatcaga taatgggaac attatgatcc agaaacacga
     1741 tggcatcaca gtggcagtgc acaaaatggc ctcttgacat cttgtatcag ttctccagca
     1801 gcttgtcacg gggactcgat cgtaccttat gttaattatc ttatagagct attagagttc
     1861 cagtaattag gccattcatg taatgtgcat taggcacttt tctattaatt ttagagtaag
     1921 ctgctttttg acactctgac ttatcaaaat tgacttatca aaatactagt taagggaagt
     1981 atgttttgaa gcaagtgtag gtcactttgt atacagaatt tcgttatgtt taataaaact
     2041 ggttggagga aa
//
LOCUS       XM_032612153            1075 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LSM10, U7 small nuclear RNA associated
            (LSM10), transcript variant X1, mRNA.
ACCESSION   XM_032612153
VERSION     XM_032612153.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1075
                     /gene="LSM10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743569"
     CDS             344..715
                     /gene="LSM10"
                     /codon_start=1
                     /product="U7 snRNA-associated Sm-like protein LSm10"
                     /protein_id="XP_032468044.1"
                     /db_xref="GeneID:116743569"
                     /translation="MAVSHSVKERTISENSLIILLQGLQGQVTTVDLRDESMARGRID
                     NVDAFMNIRLAQVTYTDRWGHQVELDDLFVTGRNVRYVHIPDDVNITATIEQQLQVIH
                     RVRNFGGKGKGRREFPSKNYK"
     misc_feature    365..598
                     /gene="LSM10"
                     /note="Like-Sm protein 10; Region: LSm10; cd01733"
                     /db_xref="CDD:212480"
     misc_feature    order(428..448,452..490,494..508)
                     /gene="LSM10"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212480"
     misc_feature    order(482..484,488..490,566..568)
                     /gene="LSM10"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212480"
     misc_feature    554..589
                     /gene="LSM10"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212480"
ORIGIN      
        1 tggggattgt agttccgggc ccgccgcggg gtcgcgggcc ctgcgcgcag ccgcgctctc
       61 gatgctccgg gagggcagag cggccactcg gttgccatgg cttctcagtt cggccgcggg
      121 agaggagtag ccaggctagg cgctcgttag tttcggcggc gacgcgcagc gggacagcgg
      181 aaggaacgcg cgcggtgggt ccgggagcca ggggcggaac gctagggaac caggagccgc
      241 ggaggcggcg ggagcggggc cagcgttttc ctcccggttg ctgagcgtag ctcctcaccc
      301 aagcccactc ccacgctcta gcgagcagcc gcagtgtgga acaatggcag tgagccactc
      361 agtgaaggag cggaccatct ccgagaacag cctgatcatc ttgctgcagg gcctccaggg
      421 ccaggtcacc accgtggacc tgcgggatga gagcatggcc cgcggacgca tagacaacgt
      481 tgatgctttc atgaacatcc gcctggccca ggtcacctac acggaccgtt gggggcatca
      541 ggtcgagctg gatgacctct ttgtgacagg ccggaatgtc cgttacgtcc acatccccga
      601 tgatgtgaac atcaccgcga ccattgagca gcagctgcag gtcatccatc gggtgcgcaa
      661 ctttggcggc aaggggaaag gccggcggga atttccctcc aagaactata agtgagcctg
      721 tcccctcagc cagccctggt ccccactcag gttcctccag agttctactg agccaaagcc
      781 tgctctccct ccccgcccag aacctgggaa gggaggaggg ccagtccaga agctggtgtc
      841 tggcagacat cacctgtcac agctgccttt cacagggtcc cactcccaga ctcaccctgg
      901 gacccagaat tctagttatc tgtctgtggc cttggggtag atgacagtcc cccctttgga
      961 tattatttat ctgaatctct gatttactgg tttagggaat gtgtcaaata gttttcagcc
     1021 ctctcccagt gaggattatt aaatgtgctc gtcctgagca tccccacttc tcttg
//
LOCUS       XM_032612163            1192 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LSM10, U7 small nuclear RNA associated
            (LSM10), transcript variant X2, mRNA.
ACCESSION   XM_032612163
VERSION     XM_032612163.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1192
                     /gene="LSM10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743569"
     CDS             470..841
                     /gene="LSM10"
                     /codon_start=1
                     /product="U7 snRNA-associated Sm-like protein LSm10"
                     /protein_id="XP_032468054.1"
                     /db_xref="GeneID:116743569"
                     /translation="MAVSHSVKERTISENSLIILLQGLQGQVTTVDLRDESMARGRID
                     NVDAFMNIRLAQVTYTDRWGHQVELDDLFVTGRNVRYVHIPDDVNITATIEQQLQVIH
                     RVRNFGGKGKGRREFPSKNYK"
     misc_feature    491..724
                     /gene="LSM10"
                     /note="Like-Sm protein 10; Region: LSm10; cd01733"
                     /db_xref="CDD:212480"
     misc_feature    order(554..574,578..616,620..634)
                     /gene="LSM10"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212480"
     misc_feature    order(608..610,614..616,692..694)
                     /gene="LSM10"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212480"
     misc_feature    680..715
                     /gene="LSM10"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212480"
ORIGIN      
        1 cttctgggga ttgtagttcc gggcccgccg cggggtcgcg ggccctgcgc gcagccgcgc
       61 tctcgatgct ccgggagggc agagcggcca ctcggttgcc atggcttctc agttcggccg
      121 cgggagagga gtagccaggc taggcgctcg ttagtttcgg cggcgacgcg cagcgggaca
      181 gcggaaggaa cgcgcgcggt gggtccggga gccaggggcg gaacgctagg gaaccaggag
      241 ccgcggaggc ggcgggagcg gggccagcgt tttcctcccg gttgctgagc gtagctcctc
      301 acccaagccc actcccacgc tctcatcctg tagaccagtc gttctcagtg cgccccgggc
      361 cagtaacatc agcatcaact gagaatattt tagaagtgcc cattcttggg ccccacctca
      421 gaccgactga gtcagaaact gaaagagcga gcagccgcag tgtggaacaa tggcagtgag
      481 ccactcagtg aaggagcgga ccatctccga gaacagcctg atcatcttgc tgcagggcct
      541 ccagggccag gtcaccaccg tggacctgcg ggatgagagc atggcccgcg gacgcataga
      601 caacgttgat gctttcatga acatccgcct ggcccaggtc acctacacgg accgttgggg
      661 gcatcaggtc gagctggatg acctctttgt gacaggccgg aatgtccgtt acgtccacat
      721 ccccgatgat gtgaacatca ccgcgaccat tgagcagcag ctgcaggtca tccatcgggt
      781 gcgcaacttt ggcggcaagg ggaaaggccg gcgggaattt ccctccaaga actataagtg
      841 agcctgtccc ctcagccagc cctggtcccc actcaggttc ctccagagtt ctactgagcc
      901 aaagcctgct ctccctcccc gcccagaacc tgggaaggga ggagggccag tccagaagct
      961 ggtgtctggc agacatcacc tgtcacagct gcctttcaca gggtcccact cccagactca
     1021 ccctgggacc cagaattcta gttatctgtc tgtggccttg gggtagatga cagtcccccc
     1081 tttggatatt atttatctga atctctgatt tactggttta gggaatgtgt caaatagttt
     1141 tcagccctct cccagtgagg attattaaat gtgctcgtcc tgagcatccc ca
//
LOCUS       XM_032612172             943 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LSM10, U7 small nuclear RNA associated
            (LSM10), transcript variant X3, mRNA.
ACCESSION   XM_032612172
VERSION     XM_032612172.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..943
                     /gene="LSM10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743569"
     CDS             221..592
                     /gene="LSM10"
                     /codon_start=1
                     /product="U7 snRNA-associated Sm-like protein LSm10"
                     /protein_id="XP_032468063.1"
                     /db_xref="GeneID:116743569"
                     /translation="MAVSHSVKERTISENSLIILLQGLQGQVTTVDLRDESMARGRID
                     NVDAFMNIRLAQVTYTDRWGHQVELDDLFVTGRNVRYVHIPDDVNITATIEQQLQVIH
                     RVRNFGGKGKGRREFPSKNYK"
     misc_feature    242..475
                     /gene="LSM10"
                     /note="Like-Sm protein 10; Region: LSm10; cd01733"
                     /db_xref="CDD:212480"
     misc_feature    order(305..325,329..367,371..385)
                     /gene="LSM10"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212480"
     misc_feature    order(359..361,365..367,443..445)
                     /gene="LSM10"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212480"
     misc_feature    431..466
                     /gene="LSM10"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212480"
ORIGIN      
        1 tctggggatt gtagttccgg gcccgccgcg gggtcgcggg ccctgcgcgc agccgcgctc
       61 tcgatgctcc gggagggcag agcggccact cggttgccat ggcttctcag ttcggccgcg
      121 ggagaggagt agccaggcta ggcgctcgtt agtttcggcg gcgacgcgca gcgggacagc
      181 ggaaggaacg cgcgcgagcg agcagccgca gtgtggaaca atggcagtga gccactcagt
      241 gaaggagcgg accatctccg agaacagcct gatcatcttg ctgcagggcc tccagggcca
      301 ggtcaccacc gtggacctgc gggatgagag catggcccgc ggacgcatag acaacgttga
      361 tgctttcatg aacatccgcc tggcccaggt cacctacacg gaccgttggg ggcatcaggt
      421 cgagctggat gacctctttg tgacaggccg gaatgtccgt tacgtccaca tccccgatga
      481 tgtgaacatc accgcgacca ttgagcagca gctgcaggtc atccatcggg tgcgcaactt
      541 tggcggcaag gggaaaggcc ggcgggaatt tccctccaag aactataagt gagcctgtcc
      601 cctcagccag ccctggtccc cactcaggtt cctccagagt tctactgagc caaagcctgc
      661 tctccctccc cgcccagaac ctgggaaggg aggagggcca gtccagaagc tggtgtctgg
      721 cagacatcac ctgtcacagc tgcctttcac agggtcccac tcccagactc accctgggac
      781 ccagaattct agttatctgt ctgtggcctt ggggtagatg acagtccccc ctttggatat
      841 tatttatctg aatctctgat ttactggttt agggaatgtg tcaaatagtt ttcagccctc
      901 tcccagtgag gattattaaa tgtgctcgtc ctgagcatcc cca
//
LOCUS       XM_032612181            1067 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LSM10, U7 small nuclear RNA associated
            (LSM10), transcript variant X4, mRNA.
ACCESSION   XM_032612181
VERSION     XM_032612181.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1067
                     /gene="LSM10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743569"
     CDS             345..716
                     /gene="LSM10"
                     /codon_start=1
                     /product="U7 snRNA-associated Sm-like protein LSm10"
                     /protein_id="XP_032468072.1"
                     /db_xref="GeneID:116743569"
                     /translation="MAVSHSVKERTISENSLIILLQGLQGQVTTVDLRDESMARGRID
                     NVDAFMNIRLAQVTYTDRWGHQVELDDLFVTGRNVRYVHIPDDVNITATIEQQLQVIH
                     RVRNFGGKGKGRREFPSKNYK"
     misc_feature    366..599
                     /gene="LSM10"
                     /note="Like-Sm protein 10; Region: LSm10; cd01733"
                     /db_xref="CDD:212480"
     misc_feature    order(429..449,453..491,495..509)
                     /gene="LSM10"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212480"
     misc_feature    order(483..485,489..491,567..569)
                     /gene="LSM10"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212480"
     misc_feature    555..590
                     /gene="LSM10"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212480"
ORIGIN      
        1 cttctgggga ttgtagttcc gggcccgccg cggggtcgcg ggccctgcgc gcagccgcgc
       61 tctcgatgct ccgggagggc agagcggcca ctcggttgcc atggcttctc agttcggccg
      121 cgggagagga gtagccaggc taggcgctcg ttagtttcgg cggcgacgcg cagcgggaca
      181 gcggaaggaa cgcgcgcgca tcctgtagac cagtcgttct cagtgcgccc cgggccagta
      241 acatcagcat caactgagaa tattttagaa gtgcccattc ttgggcccca cctcagaccg
      301 actgagtcag aaactgaaag agcgagcagc cgcagtgtgg aacaatggca gtgagccact
      361 cagtgaagga gcggaccatc tccgagaaca gcctgatcat cttgctgcag ggcctccagg
      421 gccaggtcac caccgtggac ctgcgggatg agagcatggc ccgcggacgc atagacaacg
      481 ttgatgcttt catgaacatc cgcctggccc aggtcaccta cacggaccgt tgggggcatc
      541 aggtcgagct ggatgacctc tttgtgacag gccggaatgt ccgttacgtc cacatccccg
      601 atgatgtgaa catcaccgcg accattgagc agcagctgca ggtcatccat cgggtgcgca
      661 actttggcgg caaggggaaa ggccggcggg aatttccctc caagaactat aagtgagcct
      721 gtcccctcag ccagccctgg tccccactca ggttcctcca gagttctact gagccaaagc
      781 ctgctctccc tccccgccca gaacctggga agggaggagg gccagtccag aagctggtgt
      841 ctggcagaca tcacctgtca cagctgcctt tcacagggtc ccactcccag actcaccctg
      901 ggacccagaa ttctagttat ctgtctgtgg ccttggggta gatgacagtc ccccctttgg
      961 atattattta tctgaatctc tgatttactg gtttagggaa tgtgtcaaat agttttcagc
     1021 cctctcccag tgaggattat taaatgtgct cgtcctgagc atcccca
//
LOCUS       XR_004346813             545 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743584
            (LOC116743584), ncRNA.
ACCESSION   XR_004346813
VERSION     XR_004346813.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..545
                     /gene="LOC116743584"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116743584"
     ncRNA           1..545
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743584"
                     /product="uncharacterized LOC116743584"
                     /db_xref="GeneID:116743584"
ORIGIN      
        1 gcttcaacat agagagcttt atttccctca cagaacgagg agaccggaag tgggcggtcc
       61 aggccgagtc atgcaagact caggttttcc tttctgctcc accaggctta ccatgttgga
      121 tttcttcctt gtgcttcttg tctcatggtg gcaaggtagc tgcagcacct ctgggactca
      181 tttttaaggg cctcaaccag taccgctatc caagtgcttc tacagtgttc caatctgcca
      241 gcatcagatc ccacataaca ttgtattaaa ccaagggact ccctttgcag caaaagagaa
      301 agaagccacc tggaattctg gaggagctgc tccccaaact tctatcaagt agtagatcta
      361 agcacagaag gggtggatta taatggatgc tgtaatgcac tgcccatgat ccgcatcagg
      421 gctgatgacc ttattcaccc aatttgttgg gagtgcagcc agcagacatc cctcggctgt
      481 cagccttcct ctggaactac ctctgctgaa gacagtcccc tgatcccttc cctacagctg
      541 ccttc
//
LOCUS       XM_032612202            1572 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor superfamily member 25
            (TNFRSF25), transcript variant X1, mRNA.
ACCESSION   XM_032612202
VERSION     XM_032612202.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1572
                     /gene="TNFRSF25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 11 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743588"
     CDS             79..1326
                     /gene="TNFRSF25"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 25 isoform X1"
                     /protein_id="XP_032468093.1"
                     /db_xref="GeneID:116743588"
                     /translation="MEPRPGACAAALAAALLLLLGAQGQGSTPSPRCDCMHSFQMRSG
                     LVCCGGCPAGHYLKAPCTKPCGISTCLPCPRGTFLAWENHHKTRCARCQACDEEASQV
                     ALKNCSAVADTHCGCKPGWFMDCVVSQCPHSSPFRCHPCPDCEALHRRTQAPCYSGDT
                     HCGTCLPGFYEYGNSCMSCPTSTLGGCPGPCVAVCGWRQVFWVQVLLAALVVPLLLGA
                     TLAYTYRRCQLCKAIVPAGEAGVEALTPLQATHLSPRDSSPTLLVTPSSSEKVCTVQL
                     IGSSWTSGSPQAQEAPCPEVTWSWDQLPSRALGPPPPPSPAPPAGSAAAMLQPGPQLY
                     DVMDAVPARRWKEFVRTLGLREAEIEAVEVEVGRFRDQQYEMLKRWRQQQPAGLGAVY
                     AALERMGLDGCAEDLRSRLQRGP"
     misc_feature    172..510
                     /gene="TNFRSF25"
                     /note="tumor necrosis factor receptor superfamily member
                     25 (TNFRSF25), also known as death receptor 3 (DR3);
                     Region: TNFRSF25; cd13420"
                     /db_xref="CDD:276925"
     misc_feature    181..288
                     /gene="TNFRSF25"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276925"
     misc_feature    295..423
                     /gene="TNFRSF25"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276925"
     misc_feature    427..501
                     /gene="TNFRSF25"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276925"
     misc_feature    1072..1302
                     /gene="TNFRSF25"
                     /note="Death domain of Tumor Necrosis Factor Receptor
                     superfamily 25; Region: Death_TNFRSF25_DR3; cd08815"
                     /db_xref="CDD:176793"
ORIGIN      
        1 ccggcctggg ccccacccgc ggcgggcgga gcggggaagc ccgggtcggg tcgagggccc
       61 agcgtggcgc ccagggctat ggagccgcgg cccggggcgt gtgcggcggc gctggctgcg
      121 gccctcctcc tgctgctggg tgcccagggc cagggcagca ctcccagccc caggtgtgac
      181 tgtatgcaca gcttccagat gaggagtggt ctggtctgct gcgggggctg cccagcaggg
      241 cactacttga aggccccctg cacaaagccc tgtggcatct ccacctgtct cccgtgcccc
      301 cggggcacct tcctggcctg ggagaaccac cacaagaccc gctgtgcccg ctgccaggcc
      361 tgtgatgagg aagcctccca ggtggccctg aagaactgct cggcggtggc ggacacccac
      421 tgcggctgca agccaggctg gttcatggac tgcgtcgtca gccagtgtcc ccacagctct
      481 ccctttcgct gccacccgtg cccagactgt gaggccctgc accgccgcac acaggccccc
      541 tgttacagcg gagacactca ctgtgggacc tgcctgcccg gcttctatga atacggcaac
      601 agctgcatgt cctgtcccac gagcaccctt gggggctgtc ctgggccctg tgtggctgtc
      661 tgtggctgga ggcaggtgtt ctgggtccag gtgctcctgg cagccctggt ggtcccactc
      721 ctgcttggtg ccaccctggc ctacacatac cgccgctgcc agctttgcaa ggccatagtt
      781 cctgcaggtg aagctggggt ggaggccctg accccgctgc aggccaccca cctctcaccc
      841 cgggacagca gccccaccct tctggtaaca cccagcagca gtgagaaggt ctgcaccgtc
      901 cagctgatag gcagcagctg gacctctggc tctccccagg cccaggaggc gccctgccca
      961 gaggtgacgt ggtcctggga ccagctgccc agcagagctc ttggcccacc gcccccgccc
     1021 tcgccggcgc cccctgcagg ctcggcggcc gccatgctcc agccgggccc gcagctctac
     1081 gacgtgatgg acgcggtgcc cgcgcggcgc tggaaggagt tcgtgcgcac gctggggctg
     1141 cgcgaggcgg agatcgaggc ggtggaggtg gaggtcgggc gcttccgcga ccagcagtac
     1201 gagatgctca agcgctggcg ccagcagcag cccgcgggct tgggcgccgt ctacgccgcc
     1261 ctggagcgca tggggctgga cggctgcgcc gaggacctgc ggagccgcct gcagcgtggc
     1321 ccgtgactcc ggggcccacc cgccacttcg aggctctggt ggcccttgca gaagccctaa
     1381 gtacggttac ttatgcgtgt agacatttaa tgtcacttat taagcccctg gcacggccct
     1441 gcgtagcaga gccagccagc ctcacccctg cgcgccccca aggttccggt taaggcgagg
     1501 aagcgccaac gaccatcagc tgtttctcgg cctgtgtttg gctgaggcct tggtattatt
     1561 aaaaatctat ga
//
LOCUS       XM_032612210            1536 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor superfamily member 25
            (TNFRSF25), transcript variant X2, mRNA.
ACCESSION   XM_032612210
VERSION     XM_032612210.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1536
                     /gene="TNFRSF25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743588"
     CDS             79..1290
                     /gene="TNFRSF25"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 25 isoform X2"
                     /protein_id="XP_032468101.1"
                     /db_xref="GeneID:116743588"
                     /translation="MEPRPGACAAALAAALLLLLGAQGQGSTPSPRCDCMHSFQMRSG
                     LVCCGGCPAGHYLKAPCTKPCGISTCLPCPRGTFLAWENHHKTRCARCQACDEEASQV
                     ALKNCSAVADTHCGCKPGWFMDCVVSQCPHSSPFRCHPCPDCEALHRRTQAPCYSGDT
                     HCGTCLPGFYEYGNSCMSCPTSTLGGCPGPCVAVCGWRQVFWVQVLLAALVVPLLLGA
                     TLAYTYRRCQLCKAIVPAGEAGVEALTPLQATHLSPRDSSPTLLVTPSSSEKVCTVQL
                     IGSSWTSGSPQAQEAPCPEVTWSWDQLPSRALGSAAAMLQPGPQLYDVMDAVPARRWK
                     EFVRTLGLREAEIEAVEVEVGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCA
                     EDLRSRLQRGP"
     misc_feature    172..510
                     /gene="TNFRSF25"
                     /note="tumor necrosis factor receptor superfamily member
                     25 (TNFRSF25), also known as death receptor 3 (DR3);
                     Region: TNFRSF25; cd13420"
                     /db_xref="CDD:276925"
     misc_feature    181..288
                     /gene="TNFRSF25"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276925"
     misc_feature    295..423
                     /gene="TNFRSF25"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276925"
     misc_feature    427..501
                     /gene="TNFRSF25"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276925"
     misc_feature    1036..1266
                     /gene="TNFRSF25"
                     /note="Death domain of Tumor Necrosis Factor Receptor
                     superfamily 25; Region: Death_TNFRSF25_DR3; cd08815"
                     /db_xref="CDD:176793"
ORIGIN      
        1 ccggcctggg ccccacccgc ggcgggcgga gcggggaagc ccgggtcggg tcgagggccc
       61 agcgtggcgc ccagggctat ggagccgcgg cccggggcgt gtgcggcggc gctggctgcg
      121 gccctcctcc tgctgctggg tgcccagggc cagggcagca ctcccagccc caggtgtgac
      181 tgtatgcaca gcttccagat gaggagtggt ctggtctgct gcgggggctg cccagcaggg
      241 cactacttga aggccccctg cacaaagccc tgtggcatct ccacctgtct cccgtgcccc
      301 cggggcacct tcctggcctg ggagaaccac cacaagaccc gctgtgcccg ctgccaggcc
      361 tgtgatgagg aagcctccca ggtggccctg aagaactgct cggcggtggc ggacacccac
      421 tgcggctgca agccaggctg gttcatggac tgcgtcgtca gccagtgtcc ccacagctct
      481 ccctttcgct gccacccgtg cccagactgt gaggccctgc accgccgcac acaggccccc
      541 tgttacagcg gagacactca ctgtgggacc tgcctgcccg gcttctatga atacggcaac
      601 agctgcatgt cctgtcccac gagcaccctt gggggctgtc ctgggccctg tgtggctgtc
      661 tgtggctgga ggcaggtgtt ctgggtccag gtgctcctgg cagccctggt ggtcccactc
      721 ctgcttggtg ccaccctggc ctacacatac cgccgctgcc agctttgcaa ggccatagtt
      781 cctgcaggtg aagctggggt ggaggccctg accccgctgc aggccaccca cctctcaccc
      841 cgggacagca gccccaccct tctggtaaca cccagcagca gtgagaaggt ctgcaccgtc
      901 cagctgatag gcagcagctg gacctctggc tctccccagg cccaggaggc gccctgccca
      961 gaggtgacgt ggtcctggga ccagctgccc agcagagctc ttggctcggc ggccgccatg
     1021 ctccagccgg gcccgcagct ctacgacgtg atggacgcgg tgcccgcgcg gcgctggaag
     1081 gagttcgtgc gcacgctggg gctgcgcgag gcggagatcg aggcggtgga ggtggaggtc
     1141 gggcgcttcc gcgaccagca gtacgagatg ctcaagcgct ggcgccagca gcagcccgcg
     1201 ggcttgggcg ccgtctacgc cgccctggag cgcatggggc tggacggctg cgccgaggac
     1261 ctgcggagcc gcctgcagcg tggcccgtga ctccggggcc cacccgccac ttcgaggctc
     1321 tggtggccct tgcagaagcc ctaagtacgg ttacttatgc gtgtagacat ttaatgtcac
     1381 ttattaagcc cctggcacgg ccctgcgtag cagagccagc cagcctcacc cctgcgcgcc
     1441 cccaaggttc cggttaaggc gaggaagcgc caacgaccat cagctgtttc tcggcctgtg
     1501 tttggctgag gccttggtat tattaaaaat ctatga
//
LOCUS       XR_004346818             248 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743598
            (LOC116743598), transcript variant X1, ncRNA.
ACCESSION   XR_004346818
VERSION     XR_004346818.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..248
                     /gene="LOC116743598"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116743598"
     ncRNA           1..248
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743598"
                     /product="uncharacterized LOC116743598, transcript variant
                     X1"
                     /db_xref="GeneID:116743598"
ORIGIN      
        1 cacaccctct ccagcattta ctgtttctag attttttgat gatggccatt ctgactggta
       61 ttgggtgata cctcattgta gttttgattt gcattactct aatacttagc tatgttgagg
      121 cacttttcat gtgcccctgg gctatctgta tgtcttcttt ggagaaatgt ctacttaggt
      181 cttctgccca ttttttaatt gtctgttttt ttaatattga gctgcatgag ctgtttatat
      241 attttgga
//
LOCUS       XR_004346819             229 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743598
            (LOC116743598), transcript variant X2, ncRNA.
ACCESSION   XR_004346819
VERSION     XR_004346819.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..229
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..229
                     /gene="LOC116743598"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116743598"
     ncRNA           1..229
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743598"
                     /product="uncharacterized LOC116743598, transcript variant
                     X2"
                     /db_xref="GeneID:116743598"
ORIGIN      
        1 cacaccctct ccagcattta ctgtttctag attttttgat gatggccatt ctgactggta
       61 ttgggtgata cctcattgta gttttgattt gcattactct aatacttagc tatgttgagg
      121 cacttttcat gtgcccctgg gctatctgta tgtcttcttt ggagaaatgt ctacttaggt
      181 cttctgccca tttttggatt gggttgtttg cttttttgat attgagctg
//
LOCUS       XM_032612237            1866 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and serine rich coiled-coil 1
            (PSRC1), transcript variant X1, mRNA.
ACCESSION   XM_032612237
VERSION     XM_032612237.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1866
                     /gene="PSRC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116743602"
     CDS             67..1215
                     /gene="PSRC1"
                     /codon_start=1
                     /product="proline/serine-rich coiled-coil protein 1
                     isoform X1"
                     /protein_id="XP_032468128.1"
                     /db_xref="GeneID:116743602"
                     /translation="MKPSLERLSTRPAPSDFRPATPPLPCPTRAEDAGLHQSLSACAP
                     GSKLTFAPAGWNMEDLEEDVKFIADETLDFGGLSPSDSREEEDTAVSVTPEKPLRRGL
                     SHRSDPNAVAPAPQSLRLSLGPLSPEKLEEILSEANRLAAHLEQCALQERENTGEGPG
                     PRRVKPSPRRETFVLKDSPVRDLLPTVSSLSRSTPSPSSLTPRLRSSDRKVSVRALRA
                     TSGKRPSNMKRESPTCNLFPASKSPASSPLARSTPPVRGKAGPSGRATASPPTSVRPV
                     LAPQPSTSNSQRLSRPQGAAAKPSSRLPVPSAIPRPASRMPLTGRSVPSSKGALPPDS
                     LPARKGLPRPSAAGHRVPVSQRPNLPIPGAGRSNLQPPRKVAVPGPTR"
     misc_feature    <100..1200
                     /gene="PSRC1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    256..600
                     /gene="PSRC1"
                     /note="G-2 and S-phase expressed 1; Region: GTSE1_N;
                     pfam15259"
                     /db_xref="CDD:464599"
ORIGIN      
        1 gggaagccga acaaggtctc ccgggcaagc aagcgcgctc gcggcctcct cgcctcagcc
       61 ctccaaatga agccttccct ggaacgcctt tccactcggc ccgcaccttc ggacttccgg
      121 ccggcaaccc ctccactgcc ctgccccaca agggcggagg atgctggcct tcaccaatca
      181 ttgagtgcgt gtgctccggg gtctaagctg acttttgctc ctgctggctg gaacatggaa
      241 gatttagaag aagatgtaaa gtttatagca gatgagacct tggactttgg ggggctgtca
      301 ccatctgaca gtcgagagga agaagataca gcagtgtcgg tgactccgga gaaacccctc
      361 cgacgaggtc tctcccatcg aagtgaccca aatgcagtgg cccccgcccc ccagagtctg
      421 aggctcagtt taggccccct cagcccagag aagctggaag aaatcctcag tgaagccaac
      481 cggctggcag ctcatctgga acagtgtgcc ctgcaggagc gggagaacac cggtgagggc
      541 ccggggcctc gaagggtgaa gcccagccct cggcgggaga cctttgtgct caaggacagt
      601 cctgtccgag acctgctgcc caccgtgagc tctttgtctc ggagcactcc ctccccaagc
      661 agcctgacac cccgactccg gagcagtgat aggaaggtgt cagtcagggc tcttcgagca
      721 acatctggaa agaggccctc caacatgaag agggagtcgc ccacttgcaa tctgttccct
      781 gcatccaaaa gcccagcatc ttctcctctt gcccgatcaa ctcctccagt ccgggggaaa
      841 gccgggccca gtgggagagc aacagcaagc ccacctacct ctgtcaggcc agtcttggct
      901 ccacagcctt ctaccagcaa ctctcagcgc ctgtctcggc cacagggagc agctgctaaa
      961 ccttccagtc gactgcctgt tccgtcggcc attcccaggc ctgccagcag gatgccactc
     1021 accggccgga gtgtaccatc cagcaaaggt gcccttcctc cagattccct gccagctcgg
     1081 aaaggacttc caagaccaag tgccgcaggg cacagagttc ctgtttctca gcgaccaaat
     1141 cttcccatcc ctggtgctgg tcgcagcaat ctgcagcccc ccaggaaagt tgcagtccca
     1201 ggacctacca ggtaaagaga tcaggacagc aagcaagaat tcagtagcaa actactatag
     1261 tcactgcctg gactcacctc tatattcagc ttcccaagct ctctccttgg tggcaggcct
     1321 gactccagca gattctggcc cagggataga aggaagagct gccaccatgg ctggtgcccc
     1381 aggagtagag accgtgggag atagggtgga ttcgggttga gctggagggg aatcaaactc
     1441 tcagttgaaa caagatagga aaaagaggtt gcctcccagt ggtgaagtta aacagaaaat
     1501 aagaaatgct cgagagtggt ttgtccgcat ccacccccgt tcttgcgtcc agctccacag
     1561 agtttgattt tcatcccagg ctttggttcg atggacattt acatgtgaat ggcctctgta
     1621 gctaacctcc gtgctctcca aggagcagtc ctcctgaata acatcctcta ctggactcag
     1681 gcctgtttgg agaggcagag gcaggcatct ggtctccaga acttgtttcc tgtgaattct
     1741 atgactccta acaggccagt ttatgataag cttactccat tggtctgcat ttttctaaaa
     1801 taaaatgagt atatttttat attctgaata catgtggaag taaatcctgc tccaatttct
     1861 aacaaa
//
LOCUS       XM_032612245            1844 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and serine rich coiled-coil 1
            (PSRC1), transcript variant X2, mRNA.
ACCESSION   XM_032612245
VERSION     XM_032612245.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1844
                     /gene="PSRC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116743602"
     CDS             141..1193
                     /gene="PSRC1"
                     /codon_start=1
                     /product="proline/serine-rich coiled-coil protein 1
                     isoform X2"
                     /protein_id="XP_032468136.1"
                     /db_xref="GeneID:116743602"
                     /translation="MGASFGTCSGAPGSKLTFAPAGWNMEDLEEDVKFIADETLDFGG
                     LSPSDSREEEDTAVSVTPEKPLRRGLSHRSDPNAVAPAPQSLRLSLGPLSPEKLEEIL
                     SEANRLAAHLEQCALQERENTGEGPGPRRVKPSPRRETFVLKDSPVRDLLPTVSSLSR
                     STPSPSSLTPRLRSSDRKVSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLAR
                     STPPVRGKAGPSGRATASPPTSVRPVLAPQPSTSNSQRLSRPQGAAAKPSSRLPVPSA
                     IPRPASRMPLTGRSVPSSKGALPPDSLPARKGLPRPSAAGHRVPVSQRPNLPIPGAGR
                     SNLQPPRKVAVPGPTR"
     misc_feature    234..578
                     /gene="PSRC1"
                     /note="G-2 and S-phase expressed 1; Region: GTSE1_N;
                     pfam15259"
                     /db_xref="CDD:464599"
     misc_feature    <288..1178
                     /gene="PSRC1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 ggggagtaga aaggtggctt ggggggagga agaacccgga gggtggtggc ggggaagagg
       61 atggggcgcg tagaccgccc cagcgagaag aggtcgggtc gcagtggggc gggggccaat
      121 gtgcggaagg agatgggagg atgggagcat ctttcggcac ttgctccgga gctccggggt
      181 ctaagctgac ttttgctcct gctggctgga acatggaaga tttagaagaa gatgtaaagt
      241 ttatagcaga tgagaccttg gactttgggg ggctgtcacc atctgacagt cgagaggaag
      301 aagatacagc agtgtcggtg actccggaga aacccctccg acgaggtctc tcccatcgaa
      361 gtgacccaaa tgcagtggcc cccgcccccc agagtctgag gctcagttta ggccccctca
      421 gcccagagaa gctggaagaa atcctcagtg aagccaaccg gctggcagct catctggaac
      481 agtgtgccct gcaggagcgg gagaacaccg gtgagggccc ggggcctcga agggtgaagc
      541 ccagccctcg gcgggagacc tttgtgctca aggacagtcc tgtccgagac ctgctgccca
      601 ccgtgagctc tttgtctcgg agcactccct ccccaagcag cctgacaccc cgactccgga
      661 gcagtgatag gaaggtgtca gtcagggctc ttcgagcaac atctggaaag aggccctcca
      721 acatgaagag ggagtcgccc acttgcaatc tgttccctgc atccaaaagc ccagcatctt
      781 ctcctcttgc ccgatcaact cctccagtcc gggggaaagc cgggcccagt gggagagcaa
      841 cagcaagccc acctacctct gtcaggccag tcttggctcc acagccttct accagcaact
      901 ctcagcgcct gtctcggcca cagggagcag ctgctaaacc ttccagtcga ctgcctgttc
      961 cgtcggccat tcccaggcct gccagcagga tgccactcac cggccggagt gtaccatcca
     1021 gcaaaggtgc ccttcctcca gattccctgc cagctcggaa aggacttcca agaccaagtg
     1081 ccgcagggca cagagttcct gtttctcagc gaccaaatct tcccatccct ggtgctggtc
     1141 gcagcaatct gcagcccccc aggaaagttg cagtcccagg acctaccagg taaagagatc
     1201 aggacagcaa gcaagaattc agtagcaaac tactatagtc actgcctgga ctcacctcta
     1261 tattcagctt cccaagctct ctccttggtg gcaggcctga ctccagcaga ttctggccca
     1321 gggatagaag gaagagctgc caccatggct ggtgccccag gagtagagac cgtgggagat
     1381 agggtggatt cgggttgagc tggaggggaa tcaaactctc agttgaaaca agataggaaa
     1441 aagaggttgc ctcccagtgg tgaagttaaa cagaaaataa gaaatgctcg agagtggttt
     1501 gtccgcatcc acccccgttc ttgcgtccag ctccacagag tttgattttc atcccaggct
     1561 ttggttcgat ggacatttac atgtgaatgg cctctgtagc taacctccgt gctctccaag
     1621 gagcagtcct cctgaataac atcctctact ggactcaggc ctgtttggag aggcagaggc
     1681 aggcatctgg tctccagaac ttgtttcctg tgaattctat gactcctaac aggccagttt
     1741 atgataagct tactccattg gtctgcattt ttctaaaata aaatgagtat atttttatat
     1801 tctgaataca tgtggaagta aatcctgctc caatttctaa caaa
//
LOCUS       XM_032612253            2493 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and serine rich coiled-coil 1
            (PSRC1), transcript variant X3, mRNA.
ACCESSION   XM_032612253
VERSION     XM_032612253.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2493
                     /gene="PSRC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743602"
     CDS             802..1842
                     /gene="PSRC1"
                     /codon_start=1
                     /product="proline/serine-rich coiled-coil protein 1
                     isoform X3"
                     /protein_id="XP_032468144.1"
                     /db_xref="GeneID:116743602"
                     /translation="MGNSEEAPGSKLTFAPAGWNMEDLEEDVKFIADETLDFGGLSPS
                     DSREEEDTAVSVTPEKPLRRGLSHRSDPNAVAPAPQSLRLSLGPLSPEKLEEILSEAN
                     RLAAHLEQCALQERENTGEGPGPRRVKPSPRRETFVLKDSPVRDLLPTVSSLSRSTPS
                     PSSLTPRLRSSDRKVSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLARSTPP
                     VRGKAGPSGRATASPPTSVRPVLAPQPSTSNSQRLSRPQGAAAKPSSRLPVPSAIPRP
                     ASRMPLTGRSVPSSKGALPPDSLPARKGLPRPSAAGHRVPVSQRPNLPIPGAGRSNLQ
                     PPRKVAVPGPTR"
     misc_feature    883..1227
                     /gene="PSRC1"
                     /note="G-2 and S-phase expressed 1; Region: GTSE1_N;
                     pfam15259"
                     /db_xref="CDD:464599"
     misc_feature    <937..1827
                     /gene="PSRC1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 gagtgagttg ccaaaacagg ggtctcattc cgggcatctt ccggggcccc acagctgtgg
       61 ctcatggtgc tggagcgcta tcaccgcgcc agccgcacag tctccgacct cgttgtcggc
      121 aactcctatg catttcgagt ctttgctgag aaccagtgtg ggctcagcca gacagcctct
      181 gtcactgccg acccggccca catccagaaa gcaggtaaag cactgagact tggagctggg
      241 aagagttaag gagaaagagt tgaagacgga tggggctctc aggcactaca gcaaggccct
      301 tcttggtccc ctcagctact gtttacaaga ctgaggggtt tgtccagtga gatttctcag
      361 aagccccgaa gttcacccag cctctggcag actgcactac agtcattggc tgtgacaccc
      421 agctcttctg ctgcatccat gcctccccca agccaaagat catctggcta aagaacaaga
      481 tggatatcca aggcaacccc aagtacagag ccctcactca cctgggaatc tgctccctag
      541 aaatccacaa gcctggcccc tttgacgggg gcatctacac ctgcaaggcc attaaccccc
      601 tgggggaggc gtcagtagac tgtcgggtgg atgtgaaagc ctcctaatta gcaccatgga
      661 ctccccccaa acctggaagt atatcccttc ttgatgctct gaaaggtttc ccagagattg
      721 ctgagatgtt aaaacggaga gatgtcaaca cagagagatg tctgaatttt gcagctccta
      781 attgaggcac gctaagcaga catgggcaac tctgaggaag ctccggggtc taagctgact
      841 tttgctcctg ctggctggaa catggaagat ttagaagaag atgtaaagtt tatagcagat
      901 gagaccttgg actttggggg gctgtcacca tctgacagtc gagaggaaga agatacagca
      961 gtgtcggtga ctccggagaa acccctccga cgaggtctct cccatcgaag tgacccaaat
     1021 gcagtggccc ccgcccccca gagtctgagg ctcagtttag gccccctcag cccagagaag
     1081 ctggaagaaa tcctcagtga agccaaccgg ctggcagctc atctggaaca gtgtgccctg
     1141 caggagcggg agaacaccgg tgagggcccg gggcctcgaa gggtgaagcc cagccctcgg
     1201 cgggagacct ttgtgctcaa ggacagtcct gtccgagacc tgctgcccac cgtgagctct
     1261 ttgtctcgga gcactccctc cccaagcagc ctgacacccc gactccggag cagtgatagg
     1321 aaggtgtcag tcagggctct tcgagcaaca tctggaaaga ggccctccaa catgaagagg
     1381 gagtcgccca cttgcaatct gttccctgca tccaaaagcc cagcatcttc tcctcttgcc
     1441 cgatcaactc ctccagtccg ggggaaagcc gggcccagtg ggagagcaac agcaagccca
     1501 cctacctctg tcaggccagt cttggctcca cagccttcta ccagcaactc tcagcgcctg
     1561 tctcggccac agggagcagc tgctaaacct tccagtcgac tgcctgttcc gtcggccatt
     1621 cccaggcctg ccagcaggat gccactcacc ggccggagtg taccatccag caaaggtgcc
     1681 cttcctccag attccctgcc agctcggaaa ggacttccaa gaccaagtgc cgcagggcac
     1741 agagttcctg tttctcagcg accaaatctt cccatccctg gtgctggtcg cagcaatctg
     1801 cagcccccca ggaaagttgc agtcccagga cctaccaggt aaagagatca ggacagcaag
     1861 caagaattca gtagcaaact actatagtca ctgcctggac tcacctctat attcagcttc
     1921 ccaagctctc tccttggtgg caggcctgac tccagcagat tctggcccag ggatagaagg
     1981 aagagctgcc accatggctg gtgccccagg agtagagacc gtgggagata gggtggattc
     2041 gggttgagct ggaggggaat caaactctca gttgaaacaa gataggaaaa agaggttgcc
     2101 tcccagtggt gaagttaaac agaaaataag aaatgctcga gagtggtttg tccgcatcca
     2161 cccccgttct tgcgtccagc tccacagagt ttgattttca tcccaggctt tggttcgatg
     2221 gacatttaca tgtgaatggc ctctgtagct aacctccgtg ctctccaagg agcagtcctc
     2281 ctgaataaca tcctctactg gactcaggcc tgtttggaga ggcagaggca ggcatctggt
     2341 ctccagaact tgtttcctgt gaattctatg actcctaaca ggccagttta tgataagctt
     2401 actccattgg tctgcatttt tctaaaataa aatgagtata tttttatatt ctgaatacat
     2461 gtggaagtaa atcctgctcc aatttctaac aaa
//
LOCUS       XM_032612262            1744 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline and serine rich coiled-coil 1
            (PSRC1), transcript variant X4, mRNA.
ACCESSION   XM_032612262
VERSION     XM_032612262.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1744
                     /gene="PSRC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743602"
     CDS             113..1093
                     /gene="PSRC1"
                     /codon_start=1
                     /product="proline/serine-rich coiled-coil protein 1
                     isoform X4"
                     /protein_id="XP_032468153.1"
                     /db_xref="GeneID:116743602"
                     /translation="MEDLEEDVKFIADETLDFGGLSPSDSREEEDTAVSVTPEKPLRR
                     GLSHRSDPNAVAPAPQSLRLSLGPLSPEKLEEILSEANRLAAHLEQCALQERENTGEG
                     PGPRRVKPSPRRETFVLKDSPVRDLLPTVSSLSRSTPSPSSLTPRLRSSDRKVSVRAL
                     RATSGKRPSNMKRESPTCNLFPASKSPASSPLARSTPPVRGKAGPSGRATASPPTSVR
                     PVLAPQPSTSNSQRLSRPQGAAAKPSSRLPVPSAIPRPASRMPLTGRSVPSSKGALPP
                     DSLPARKGLPRPSAAGHRVPVSQRPNLPIPGAGRSNLQPPRKVAVPGPTR"
     misc_feature    134..478
                     /gene="PSRC1"
                     /note="G-2 and S-phase expressed 1; Region: GTSE1_N;
                     pfam15259"
                     /db_xref="CDD:464599"
     misc_feature    <188..1078
                     /gene="PSRC1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 gaaaggagcc ccgccccctc ggagcgggtt cccgggacta ggttgtggga ggaaaacacc
       61 ttccgcggga gctccggggt ctaagctgac ttttgctcct gctggctgga acatggaaga
      121 tttagaagaa gatgtaaagt ttatagcaga tgagaccttg gactttgggg ggctgtcacc
      181 atctgacagt cgagaggaag aagatacagc agtgtcggtg actccggaga aacccctccg
      241 acgaggtctc tcccatcgaa gtgacccaaa tgcagtggcc cccgcccccc agagtctgag
      301 gctcagttta ggccccctca gcccagagaa gctggaagaa atcctcagtg aagccaaccg
      361 gctggcagct catctggaac agtgtgccct gcaggagcgg gagaacaccg gtgagggccc
      421 ggggcctcga agggtgaagc ccagccctcg gcgggagacc tttgtgctca aggacagtcc
      481 tgtccgagac ctgctgccca ccgtgagctc tttgtctcgg agcactccct ccccaagcag
      541 cctgacaccc cgactccgga gcagtgatag gaaggtgtca gtcagggctc ttcgagcaac
      601 atctggaaag aggccctcca acatgaagag ggagtcgccc acttgcaatc tgttccctgc
      661 atccaaaagc ccagcatctt ctcctcttgc ccgatcaact cctccagtcc gggggaaagc
      721 cgggcccagt gggagagcaa cagcaagccc acctacctct gtcaggccag tcttggctcc
      781 acagccttct accagcaact ctcagcgcct gtctcggcca cagggagcag ctgctaaacc
      841 ttccagtcga ctgcctgttc cgtcggccat tcccaggcct gccagcagga tgccactcac
      901 cggccggagt gtaccatcca gcaaaggtgc ccttcctcca gattccctgc cagctcggaa
      961 aggacttcca agaccaagtg ccgcagggca cagagttcct gtttctcagc gaccaaatct
     1021 tcccatccct ggtgctggtc gcagcaatct gcagcccccc aggaaagttg cagtcccagg
     1081 acctaccagg taaagagatc aggacagcaa gcaagaattc agtagcaaac tactatagtc
     1141 actgcctgga ctcacctcta tattcagctt cccaagctct ctccttggtg gcaggcctga
     1201 ctccagcaga ttctggccca gggatagaag gaagagctgc caccatggct ggtgccccag
     1261 gagtagagac cgtgggagat agggtggatt cgggttgagc tggaggggaa tcaaactctc
     1321 agttgaaaca agataggaaa aagaggttgc ctcccagtgg tgaagttaaa cagaaaataa
     1381 gaaatgctcg agagtggttt gtccgcatcc acccccgttc ttgcgtccag ctccacagag
     1441 tttgattttc atcccaggct ttggttcgat ggacatttac atgtgaatgg cctctgtagc
     1501 taacctccgt gctctccaag gagcagtcct cctgaataac atcctctact ggactcaggc
     1561 ctgtttggag aggcagaggc aggcatctgg tctccagaac ttgtttcctg tgaattctat
     1621 gactcctaac aggccagttt atgataagct tactccattg gtctgcattt ttctaaaata
     1681 aaatgagtat atttttatat tctgaataca tgtggaagta aatcctgctc caatttctaa
     1741 caaa
//
LOCUS       XM_032612275            3148 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus OMA1 zinc metallopeptidase (OMA1),
            transcript variant X1, mRNA.
ACCESSION   XM_032612275
VERSION     XM_032612275.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3148
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3148
                     /gene="OMA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743620"
     CDS             1324..2898
                     /gene="OMA1"
                     /codon_start=1
                     /product="metalloendopeptidase OMA1, mitochondrial isoform
                     X1"
                     /protein_id="XP_032468166.1"
                     /db_xref="GeneID:116743620"
                     /translation="MSFICGLQFAARNCVFFRFNLLTSWRKCNTQAVTSLDRHQVKIN
                     SIVNKPLGLGVNQGDRWTFLPENFHFCRTFNNKRTGCLLSIRSKETWMITQKCTVWNN
                     SFSRQLLMKDVLVVPALSVVHRLNCLPTRDIRSFHTSPRFQAAPVPLLLMILKPVQKL
                     LAIIVGRGIRKWWQALPPNKKELFKESVRKNKWKLFLGLSSFGLLFVVFYFTHLEVSP
                     VTGRSKLLLLGKEHFRLLSELEYEAWMEEFKNDMLTEKDTRYMAVKEVVHHLIECNKD
                     IPGISEINWVIHVVDSPDINAFVLPNGQVFIFTGLLNSVTDIHQLSFLLGHEIAHAVL
                     EHAAEKASLVHFLDFLGLIFLTMIWAICPRDSLALLGQWIQSKLQEFMFDRPYSRTLE
                     AEADKIGLQLAAKACVDVRASSVFWQQMEFAESLHGLPKLPEWLSTHPSHGNRAEHLD
                     RLIPQALKIREICNCPPLSGPDPRLLFKLSMKNFLEEAEKEDLNITVKPKMDTLPIQN
                     EKQIALTCIVEKRTGS"
     misc_feature    2110..2691
                     /gene="OMA1"
                     /note="Peptidase M48C, integral membrane endopeptidase;
                     Region: M48C_Oma1_like; cd07331"
                     /db_xref="CDD:320690"
     misc_feature    order(2302..2307,2314..2316,2497..2499,2509..2511,
                     2638..2640)
                     /gene="OMA1"
                     /note="putative active site [active]"
                     /db_xref="CDD:320690"
     misc_feature    order(2302..2304,2314..2316,2497..2499,2638..2640)
                     /gene="OMA1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:320690"
ORIGIN      
        1 ggagccgggc tggagtaaag cacgagggcg gcgtgtggag tcgggggaga gggcgagtgg
       61 gaaaggagga cgtggcagta aagtctcctt ttcccgcctg atcccgtcct ggtgttgaac
      121 tgcggggacc ccagggtgtt accctggcag cgcgggagtt gcaaataggc aggtggctgc
      181 attttccggg aagataagct ccctctcctc ccagccttct cattagcggc gctttttaaa
      241 aagttgtggt tctttttacc gcagtgtcgt gtgcgtcaca gtgacacctt cacccgtaga
      301 aaacctcttc cagccgcttt tggtatcttg agactcaaac catctctttt acctgtccct
      361 cttaaagcag agaaagtaaa cgttttccta cccaaacccc gcagtgaaaa ataggaaatt
      421 ccctgtctca acagttgtag ggtatttaaa taatttcttc atgagcttgt ctacaaattc
      481 gctttttgtg ctccttaaat aatgtcactt gcctgcgtaa agtggaacaa cagttgtgtt
      541 gtgccgtgca gtgctcaatg agaaatttta gtctagggag atgaaaacac ttcattggga
      601 attcagggat tgaacaacta tggtgactct gaccaatgcc atgtaaccct cacgaaaagg
      661 atttgggttc atatccatca ttctcagctg tggtgaaggg gtgcagtctg gcatttggaa
      721 gcttaagaac caactctgtt gccttctaat ttattatttt tttaagcttc catcatgtgt
      781 gtactttgct tgaatgatta ttttaaagta catgtgctat ttttgccaat ctgacagctg
      841 tttccataga aactagggag gaaatagtca ctttcagaag agttgttaaa actgtcttcc
      901 aggcttcagc cgtgagtgcc agtgagcgct gtacttgctc attctgagat ggtacttaaa
      961 gaattaagga tctgaaacgt tcgtagaggc taacaatcca aattgtttag ttttctcaca
     1021 tcattaattt agtaatcctg gaagtctgcc agctatgttt gttgacctgc tacagttctt
     1081 tgaagaggat gtgtcagccc tgattctttc ttctgctctg tgtagtctag tgattggatc
     1141 tttgaaaatg tatagttttt ttctcccatt ctttaccctt tcttaaggat acagcaggga
     1201 ttacaaaata tcagtttaaa cagcacggaa atatatgaga tggaaatact gaatccctta
     1261 caaccatcat cctgccaccc caaataacca ctgtgaatgg tttgataatc aagcaaaaca
     1321 aagatgagct tcatctgtgg actgcagttt gctgctagaa actgtgtttt cttccgattt
     1381 aatttactga ccagctggag aaaatgtaac acacaagctg taacctcact ggaccgtcat
     1441 caagtgaaaa ttaacagtat agtaaataag cctctgggcc tgggagtaaa tcagggtgat
     1501 agatggacat ttttgcctga aaactttcat ttctgtagga cttttaataa caaaagaaca
     1561 ggttgcctct tgagcatcag aagtaaggaa acttggatga ttacccaaaa atgtactgtg
     1621 tggaataact ctttctcaag acagttactg atgaaagacg ttctagtagt tcctgcgctt
     1681 tcagtggtgc atcgtctaaa ctgtttaccc acaagagaca tcaggagttt ccatacttct
     1741 ccacggtttc aagctgctcc ggttcctctc ttgttgatga ttcttaaacc agtgcagaag
     1801 ctactggcta tcattgtggg caggggcata aggaaatggt ggcaggcact tcctcctaac
     1861 aagaaggaac tatttaaaga aagtgtaagg aagaataaat ggaagttatt ccttggtttg
     1921 agtagttttg gattgctttt tgtagtattt tattttacac acctggaagt gagtccagtc
     1981 acaggaagga gcaagcttct attactgggg aaagaacatt tcagactttt atcagaactg
     2041 gaatatgaag cgtggatgga agaatttaaa aatgatatgc taactgagaa agacacccga
     2101 tacatggctg ttaaagaagt ggttcatcat ttaattgaat gcaataaaga tattccaggg
     2161 atctctgaga tcaattgggt aattcacgtg gttgattccc cagatataaa tgcctttgtg
     2221 cttccaaacg gacaagtgtt tatcttcact gggcttttaa atagtgtgac tgatattcat
     2281 cagctgtcct tccttctggg ccacgaaata gcacatgcag tacttgaaca tgccgcagaa
     2341 aaggctagct tggttcattt cctggatttc ctaggtctga tttttctcac aatgatttgg
     2401 gccatttgtc ctcgagatag tttggcactt ttgggccagt ggattcagtc taaattgcag
     2461 gagtttatgt ttgatagacc atatagtaga acactggagg ctgaagctga caaaattgga
     2521 ctacaacttg ctgcgaaggc ttgtgtggac gtcagagcca gttcagtgtt ttggcaacag
     2581 atggaatttg cagaaagcct ccatggtctt cccaagttgc cagaatggtt atctacacac
     2641 ccttctcatg gaaatcgagc tgagcacttg gatagactca tacctcaggc actcaaaatt
     2701 agagagatct gtaattgccc accactttct ggaccagacc ctcgattact gttcaaactc
     2761 agcatgaaga attttcttga agaagcagag aaagaagacc taaatatcac tgttaaaccg
     2821 aaaatggata ctctccccat tcaaaatgag aagcaaatag cattaacgtg tatagttgag
     2881 aaaagaactg gcagttgaat taaaatttat gagacaccag gtacatgaag aatgcagtaa
     2941 tccttatcat tttcatgtta ctttttaaaa aatattgttt gaaatgaaaa aaaaagagga
     3001 tactcagggt caaatcatgt atattacagg tattatctaa attcttatac taggtattta
     3061 tttttcataa aatattgata tattttaatc tattttaaaa tatcttcaat gaggaaaatg
     3121 tcacagaata aatttatatt acacattt
//
LOCUS       XM_032612286            1866 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus OMA1 zinc metallopeptidase (OMA1),
            transcript variant X2, mRNA.
ACCESSION   XM_032612286
VERSION     XM_032612286.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1866
                     /gene="OMA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743620"
     CDS             42..1616
                     /gene="OMA1"
                     /codon_start=1
                     /product="metalloendopeptidase OMA1, mitochondrial isoform
                     X1"
                     /protein_id="XP_032468177.1"
                     /db_xref="GeneID:116743620"
                     /translation="MSFICGLQFAARNCVFFRFNLLTSWRKCNTQAVTSLDRHQVKIN
                     SIVNKPLGLGVNQGDRWTFLPENFHFCRTFNNKRTGCLLSIRSKETWMITQKCTVWNN
                     SFSRQLLMKDVLVVPALSVVHRLNCLPTRDIRSFHTSPRFQAAPVPLLLMILKPVQKL
                     LAIIVGRGIRKWWQALPPNKKELFKESVRKNKWKLFLGLSSFGLLFVVFYFTHLEVSP
                     VTGRSKLLLLGKEHFRLLSELEYEAWMEEFKNDMLTEKDTRYMAVKEVVHHLIECNKD
                     IPGISEINWVIHVVDSPDINAFVLPNGQVFIFTGLLNSVTDIHQLSFLLGHEIAHAVL
                     EHAAEKASLVHFLDFLGLIFLTMIWAICPRDSLALLGQWIQSKLQEFMFDRPYSRTLE
                     AEADKIGLQLAAKACVDVRASSVFWQQMEFAESLHGLPKLPEWLSTHPSHGNRAEHLD
                     RLIPQALKIREICNCPPLSGPDPRLLFKLSMKNFLEEAEKEDLNITVKPKMDTLPIQN
                     EKQIALTCIVEKRTGS"
     misc_feature    828..1409
                     /gene="OMA1"
                     /note="Peptidase M48C, integral membrane endopeptidase;
                     Region: M48C_Oma1_like; cd07331"
                     /db_xref="CDD:320690"
     misc_feature    order(1020..1025,1032..1034,1215..1217,1227..1229,
                     1356..1358)
                     /gene="OMA1"
                     /note="putative active site [active]"
                     /db_xref="CDD:320690"
     misc_feature    order(1020..1022,1032..1034,1215..1217,1356..1358)
                     /gene="OMA1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:320690"
ORIGIN      
        1 cgtacgcttg cgcgtaggtc ggataatcaa gcaaaacaaa gatgagcttc atctgtggac
       61 tgcagtttgc tgctagaaac tgtgttttct tccgatttaa tttactgacc agctggagaa
      121 aatgtaacac acaagctgta acctcactgg accgtcatca agtgaaaatt aacagtatag
      181 taaataagcc tctgggcctg ggagtaaatc agggtgatag atggacattt ttgcctgaaa
      241 actttcattt ctgtaggact tttaataaca aaagaacagg ttgcctcttg agcatcagaa
      301 gtaaggaaac ttggatgatt acccaaaaat gtactgtgtg gaataactct ttctcaagac
      361 agttactgat gaaagacgtt ctagtagttc ctgcgctttc agtggtgcat cgtctaaact
      421 gtttacccac aagagacatc aggagtttcc atacttctcc acggtttcaa gctgctccgg
      481 ttcctctctt gttgatgatt cttaaaccag tgcagaagct actggctatc attgtgggca
      541 ggggcataag gaaatggtgg caggcacttc ctcctaacaa gaaggaacta tttaaagaaa
      601 gtgtaaggaa gaataaatgg aagttattcc ttggtttgag tagttttgga ttgctttttg
      661 tagtatttta ttttacacac ctggaagtga gtccagtcac aggaaggagc aagcttctat
      721 tactggggaa agaacatttc agacttttat cagaactgga atatgaagcg tggatggaag
      781 aatttaaaaa tgatatgcta actgagaaag acacccgata catggctgtt aaagaagtgg
      841 ttcatcattt aattgaatgc aataaagata ttccagggat ctctgagatc aattgggtaa
      901 ttcacgtggt tgattcccca gatataaatg cctttgtgct tccaaacgga caagtgttta
      961 tcttcactgg gcttttaaat agtgtgactg atattcatca gctgtccttc cttctgggcc
     1021 acgaaatagc acatgcagta cttgaacatg ccgcagaaaa ggctagcttg gttcatttcc
     1081 tggatttcct aggtctgatt tttctcacaa tgatttgggc catttgtcct cgagatagtt
     1141 tggcactttt gggccagtgg attcagtcta aattgcagga gtttatgttt gatagaccat
     1201 atagtagaac actggaggct gaagctgaca aaattggact acaacttgct gcgaaggctt
     1261 gtgtggacgt cagagccagt tcagtgtttt ggcaacagat ggaatttgca gaaagcctcc
     1321 atggtcttcc caagttgcca gaatggttat ctacacaccc ttctcatgga aatcgagctg
     1381 agcacttgga tagactcata cctcaggcac tcaaaattag agagatctgt aattgcccac
     1441 cactttctgg accagaccct cgattactgt tcaaactcag catgaagaat tttcttgaag
     1501 aagcagagaa agaagaccta aatatcactg ttaaaccgaa aatggatact ctccccattc
     1561 aaaatgagaa gcaaatagca ttaacgtgta tagttgagaa aagaactggc agttgaatta
     1621 aaatttatga gacaccaggt acatgaagaa tgcagtaatc cttatcattt tcatgttact
     1681 ttttaaaaaa tattgtttga aatgaaaaaa aaagaggata ctcagggtca aatcatgtat
     1741 attacaggta ttatctaaat tcttatacta ggtatttatt tttcataaaa tattgatata
     1801 ttttaatcta ttttaaaata tcttcaatga ggaaaatgtc acagaataaa tttatattac
     1861 acattt
//
LOCUS       XM_032612293            1866 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus OMA1 zinc metallopeptidase (OMA1),
            transcript variant X3, mRNA.
ACCESSION   XM_032612293
VERSION     XM_032612293.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1866
                     /gene="OMA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743620"
     CDS             42..1616
                     /gene="OMA1"
                     /codon_start=1
                     /product="metalloendopeptidase OMA1, mitochondrial isoform
                     X1"
                     /protein_id="XP_032468184.1"
                     /db_xref="GeneID:116743620"
                     /translation="MSFICGLQFAARNCVFFRFNLLTSWRKCNTQAVTSLDRHQVKIN
                     SIVNKPLGLGVNQGDRWTFLPENFHFCRTFNNKRTGCLLSIRSKETWMITQKCTVWNN
                     SFSRQLLMKDVLVVPALSVVHRLNCLPTRDIRSFHTSPRFQAAPVPLLLMILKPVQKL
                     LAIIVGRGIRKWWQALPPNKKELFKESVRKNKWKLFLGLSSFGLLFVVFYFTHLEVSP
                     VTGRSKLLLLGKEHFRLLSELEYEAWMEEFKNDMLTEKDTRYMAVKEVVHHLIECNKD
                     IPGISEINWVIHVVDSPDINAFVLPNGQVFIFTGLLNSVTDIHQLSFLLGHEIAHAVL
                     EHAAEKASLVHFLDFLGLIFLTMIWAICPRDSLALLGQWIQSKLQEFMFDRPYSRTLE
                     AEADKIGLQLAAKACVDVRASSVFWQQMEFAESLHGLPKLPEWLSTHPSHGNRAEHLD
                     RLIPQALKIREICNCPPLSGPDPRLLFKLSMKNFLEEAEKEDLNITVKPKMDTLPIQN
                     EKQIALTCIVEKRTGS"
     misc_feature    828..1409
                     /gene="OMA1"
                     /note="Peptidase M48C, integral membrane endopeptidase;
                     Region: M48C_Oma1_like; cd07331"
                     /db_xref="CDD:320690"
     misc_feature    order(1020..1025,1032..1034,1215..1217,1227..1229,
                     1356..1358)
                     /gene="OMA1"
                     /note="putative active site [active]"
                     /db_xref="CDD:320690"
     misc_feature    order(1020..1022,1032..1034,1215..1217,1356..1358)
                     /gene="OMA1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:320690"
ORIGIN      
        1 cggggcgtac gcttgcgcgt agataatcaa gcaaaacaaa gatgagcttc atctgtggac
       61 tgcagtttgc tgctagaaac tgtgttttct tccgatttaa tttactgacc agctggagaa
      121 aatgtaacac acaagctgta acctcactgg accgtcatca agtgaaaatt aacagtatag
      181 taaataagcc tctgggcctg ggagtaaatc agggtgatag atggacattt ttgcctgaaa
      241 actttcattt ctgtaggact tttaataaca aaagaacagg ttgcctcttg agcatcagaa
      301 gtaaggaaac ttggatgatt acccaaaaat gtactgtgtg gaataactct ttctcaagac
      361 agttactgat gaaagacgtt ctagtagttc ctgcgctttc agtggtgcat cgtctaaact
      421 gtttacccac aagagacatc aggagtttcc atacttctcc acggtttcaa gctgctccgg
      481 ttcctctctt gttgatgatt cttaaaccag tgcagaagct actggctatc attgtgggca
      541 ggggcataag gaaatggtgg caggcacttc ctcctaacaa gaaggaacta tttaaagaaa
      601 gtgtaaggaa gaataaatgg aagttattcc ttggtttgag tagttttgga ttgctttttg
      661 tagtatttta ttttacacac ctggaagtga gtccagtcac aggaaggagc aagcttctat
      721 tactggggaa agaacatttc agacttttat cagaactgga atatgaagcg tggatggaag
      781 aatttaaaaa tgatatgcta actgagaaag acacccgata catggctgtt aaagaagtgg
      841 ttcatcattt aattgaatgc aataaagata ttccagggat ctctgagatc aattgggtaa
      901 ttcacgtggt tgattcccca gatataaatg cctttgtgct tccaaacgga caagtgttta
      961 tcttcactgg gcttttaaat agtgtgactg atattcatca gctgtccttc cttctgggcc
     1021 acgaaatagc acatgcagta cttgaacatg ccgcagaaaa ggctagcttg gttcatttcc
     1081 tggatttcct aggtctgatt tttctcacaa tgatttgggc catttgtcct cgagatagtt
     1141 tggcactttt gggccagtgg attcagtcta aattgcagga gtttatgttt gatagaccat
     1201 atagtagaac actggaggct gaagctgaca aaattggact acaacttgct gcgaaggctt
     1261 gtgtggacgt cagagccagt tcagtgtttt ggcaacagat ggaatttgca gaaagcctcc
     1321 atggtcttcc caagttgcca gaatggttat ctacacaccc ttctcatgga aatcgagctg
     1381 agcacttgga tagactcata cctcaggcac tcaaaattag agagatctgt aattgcccac
     1441 cactttctgg accagaccct cgattactgt tcaaactcag catgaagaat tttcttgaag
     1501 aagcagagaa agaagaccta aatatcactg ttaaaccgaa aatggatact ctccccattc
     1561 aaaatgagaa gcaaatagca ttaacgtgta tagttgagaa aagaactggc agttgaatta
     1621 aaatttatga gacaccaggt acatgaagaa tgcagtaatc cttatcattt tcatgttact
     1681 ttttaaaaaa tattgtttga aatgaaaaaa aaagaggata ctcagggtca aatcatgtat
     1741 attacaggta ttatctaaat tcttatacta ggtatttatt tttcataaaa tattgatata
     1801 ttttaatcta ttttaaaata tcttcaatga ggaaaatgtc acagaataaa tttatattac
     1861 acattt
//
LOCUS       XR_004346826            2296 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus OMA1 zinc metallopeptidase (OMA1),
            transcript variant X4, misc_RNA.
ACCESSION   XR_004346826
VERSION     XR_004346826.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2296
                     /gene="OMA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743620"
     misc_RNA        1..2296
                     /gene="OMA1"
                     /product="OMA1 zinc metallopeptidase, transcript variant
                     X4"
                     /db_xref="GeneID:116743620"
ORIGIN      
        1 gcggggcgta cgcttgcgcg taggtcgggt cagaggaacc ttcgctttcg ctactgttag
       61 gataatcaag caaaacaaag atgagcttca tctgtggact gcagtttgct gctagaaact
      121 gtgttttctt ccgatttaat ttactgacca gctggagaaa atgtaacaca caagctgtaa
      181 cctcactgga ccgtcatcaa gtgaaaatta acagtatagt aaataagcct ctgggcctgg
      241 gagtaaatca gggtgataga tggacatttt tgcctgaaaa ctttcatttc tgtaggactt
      301 ttaataacaa aagaacaggt tgcctcttga gcatcagaag taaggaaact tggatgatta
      361 cccaaaaatg tactgtgtgg aataactctt tctcaagaca gttactgatg aaagacgttc
      421 tagtagttcc tgcgctttca gtggtgcatc gtctaaactg tttacccaca agagacatca
      481 ggagtttcca tacttctcca cggtttcaag ctgctccggt tcctctcttg ttgatgattc
      541 ttaaaccagt gcagaagcta ctggctatca ttgtgggcag gggcataagg aaatggtggc
      601 aggcacttcc tcctaacaag aaggaactat ttaaagaaag tgtaaggaag aataaatgga
      661 agttattcct tggtttgagt agttttggat tgctttttgt agtattttat tttacacacc
      721 tggaagtgag tccagtcaca ggaaggagca agcttctatt actggggaaa gaacatttca
      781 gacttttatc agaactggaa tatgaagcgt ggatggaaga atttaaaaat gatatgctaa
      841 ctgagaaaga cacccgatac atggctgtta aagaagtggt tcatcattta attgaatgca
      901 ataaagatat tccagggatc tctgagatca attgggtaat tcacgtggtt gattccccag
      961 atataaatgc ctttgtgctt ccaaacggac aagtgtttat cttcactggg cttttaaata
     1021 gtgtgactga tattcatcag ctgtccttcc ttctgggcca cgaaatagca catgcagtac
     1081 ttgaacatgc cgcagaaaag gctagcttgg ttcatttcct ggatttccta ggtctgattt
     1141 ttctcacaat gatttgggcc atttgtcctc gagatagttt ggcacttttg ggccagtgga
     1201 ttcagtctaa attgcaggag tttatgtttg atagaccata tagtagaaca ctggaggctg
     1261 aagctgacaa aattggacta caacttgctg cgaaggcttg tgtggacgtc agagccagtt
     1321 cagtgttttg gcaacagatg gaatttgcag aaagcctcca tggtcttccc aagttgccag
     1381 aatggttatc tacacaccct tctcatggaa atcgagctga gcacttggat agactcatac
     1441 ctcaggttgt gcaactgtgc tgcatattgc ttcacatcag gattctctga atctggctgc
     1501 tccatgttta gtgatgtcac gtttgatcag gggcgttgga tggtgatggc cttaacgcct
     1561 cctttggaaa tgtggttttc ccccttatga ccagcaagtg attgtggagt ggtgatttgg
     1621 cgctctgcaa aagatccaat tctttagcaa cctgagaagt gttttgatta aggtaatatc
     1681 atcctcctct gtctctaaag gcttagctaa atgtgtgtct tcaggaggaa ttagaacagt
     1741 gaagaaggaa ctcagaccag ccaagtcaac tctaaaggaa taaaagatgt tgcagccaca
     1801 tttttctcct actcaagagt agatttaaga gaggacagcc tagatgatga aaactacaga
     1861 agcagcacca tgtgaagctg gcatgctaag gctgacttaa ctacattgaa agtgacagaa
     1921 gaagaatgac tttaccaatg taagatacat ccatttcaaa aaattgctaa acttgtgaat
     1981 acagcagaga agcttgtaaa acttttattg gaggttgtaa agagaagaat tgatgctcca
     2041 gaacaaagac tcattgatgc ttggagatag aggaacatag cacaaccaaa ttaaaacatc
     2101 caaagcgaaa aagcaaagca tattgaagac acaaggaaat ccaaactgca ttaacagtgg
     2161 cactcaaaat tagagagatc tgtaattgcc caccactttc tggaccagac cctcgattac
     2221 tgttcaaact cagcatgaag aattttcttg aagaagcaga gaaagaagac ctaaatatca
     2281 ctgttaaacc gaaaat
//
LOCUS       XM_032612306            1838 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus OMA1 zinc metallopeptidase (OMA1),
            transcript variant X5, mRNA.
ACCESSION   XM_032612306
VERSION     XM_032612306.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1838
                     /gene="OMA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743620"
     CDS             81..1490
                     /gene="OMA1"
                     /codon_start=1
                     /product="metalloendopeptidase OMA1, mitochondrial isoform
                     X2"
                     /protein_id="XP_032468197.1"
                     /db_xref="GeneID:116743620"
                     /translation="MSFICGLQFAARNCVFFRFNLLTSWRKCNTQAVTSLDRHQVKIN
                     SIVNKPLGLGVNQGDRWTFLPENFHFCRTFNNKRTGCLLSIRSKETWMITQKCTVWNN
                     SFSRQLLMKDVLVVPALSVVHRLNCLPTRDIRSFHTSPRFQAAPVPLLLMILKPVQKL
                     LAIIVGRGIRKWWQALPPNKKELFKESVRKNKWKLFLGLSSFGLLFVVFYFTHLEVSP
                     VTGRSKLLLLGKEHFRLLSELEYEAWMEEFKNDMLTEKDTRYMAVKEVVHHLIECNKD
                     IPGISEINWVIHVVDSPDINAFVLPNGQVFIFTGLLNSVTDIHQLSFLLGHEIAHAVL
                     EHAAEKASLVHFLDFLGLIFLTMIWAICPRDSLALLGQWIQSKLQEFMFDRPYSRTLE
                     AEADKIGLQLAAKACVDVRASSVFWQQMEFAESLHGLPKLPEWLSTHPSHGNRAEHLD
                     RLIPQVVQLCCILLHIRIL"
     misc_feature    867..1448
                     /gene="OMA1"
                     /note="Peptidase M48C, integral membrane endopeptidase;
                     Region: M48C_Oma1_like; cd07331"
                     /db_xref="CDD:320690"
     misc_feature    order(1059..1064,1071..1073,1254..1256,1266..1268,
                     1395..1397)
                     /gene="OMA1"
                     /note="putative active site [active]"
                     /db_xref="CDD:320690"
     misc_feature    order(1059..1061,1071..1073,1254..1256,1395..1397)
                     /gene="OMA1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:320690"
ORIGIN      
        1 gcggggcgta cgcttgcgcg taggtcgggt cagaggaacc ttcgctttcg ctactgttag
       61 gataatcaag caaaacaaag atgagcttca tctgtggact gcagtttgct gctagaaact
      121 gtgttttctt ccgatttaat ttactgacca gctggagaaa atgtaacaca caagctgtaa
      181 cctcactgga ccgtcatcaa gtgaaaatta acagtatagt aaataagcct ctgggcctgg
      241 gagtaaatca gggtgataga tggacatttt tgcctgaaaa ctttcatttc tgtaggactt
      301 ttaataacaa aagaacaggt tgcctcttga gcatcagaag taaggaaact tggatgatta
      361 cccaaaaatg tactgtgtgg aataactctt tctcaagaca gttactgatg aaagacgttc
      421 tagtagttcc tgcgctttca gtggtgcatc gtctaaactg tttacccaca agagacatca
      481 ggagtttcca tacttctcca cggtttcaag ctgctccggt tcctctcttg ttgatgattc
      541 ttaaaccagt gcagaagcta ctggctatca ttgtgggcag gggcataagg aaatggtggc
      601 aggcacttcc tcctaacaag aaggaactat ttaaagaaag tgtaaggaag aataaatgga
      661 agttattcct tggtttgagt agttttggat tgctttttgt agtattttat tttacacacc
      721 tggaagtgag tccagtcaca ggaaggagca agcttctatt actggggaaa gaacatttca
      781 gacttttatc agaactggaa tatgaagcgt ggatggaaga atttaaaaat gatatgctaa
      841 ctgagaaaga cacccgatac atggctgtta aagaagtggt tcatcattta attgaatgca
      901 ataaagatat tccagggatc tctgagatca attgggtaat tcacgtggtt gattccccag
      961 atataaatgc ctttgtgctt ccaaacggac aagtgtttat cttcactggg cttttaaata
     1021 gtgtgactga tattcatcag ctgtccttcc ttctgggcca cgaaatagca catgcagtac
     1081 ttgaacatgc cgcagaaaag gctagcttgg ttcatttcct ggatttccta ggtctgattt
     1141 ttctcacaat gatttgggcc atttgtcctc gagatagttt ggcacttttg ggccagtgga
     1201 ttcagtctaa attgcaggag tttatgtttg atagaccata tagtagaaca ctggaggctg
     1261 aagctgacaa aattggacta caacttgctg cgaaggcttg tgtggacgtc agagccagtt
     1321 cagtgttttg gcaacagatg gaatttgcag aaagcctcca tggtcttccc aagttgccag
     1381 aatggttatc tacacaccct tctcatggaa atcgagctga gcacttggat agactcatac
     1441 ctcaggttgt gcaactgtgc tgcatattgc ttcacatcag gattctctga atctggctgc
     1501 tccatgttta gtgatgtcac gtttgatcag gggcgttgga tggtgatggc cttaacgcct
     1561 cctttggaaa tgtggttttc ccccttatga ccagcaagtg attgtggagt ggtgatttgg
     1621 cgctctgcaa aagatccaat tctttagcaa cctgagaagt gttttgatta aggtaatatc
     1681 atcctcctct gtctctaaag gcttagctaa atgtgtgtct tcaggaggaa ttagaacagt
     1741 gaagaaggaa ctcagaccag ccaagtcaac tctaaaggaa taaaagatgt tgcagccaca
     1801 tttttctcct actcaagagt agatttaaga ggtaggta
//
LOCUS       XM_032612313            1921 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus OMA1 zinc metallopeptidase (OMA1),
            transcript variant X6, mRNA.
ACCESSION   XM_032612313
VERSION     XM_032612313.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1921
                     /gene="OMA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743620"
     CDS             97..1671
                     /gene="OMA1"
                     /codon_start=1
                     /product="metalloendopeptidase OMA1, mitochondrial isoform
                     X1"
                     /protein_id="XP_032468204.1"
                     /db_xref="GeneID:116743620"
                     /translation="MSFICGLQFAARNCVFFRFNLLTSWRKCNTQAVTSLDRHQVKIN
                     SIVNKPLGLGVNQGDRWTFLPENFHFCRTFNNKRTGCLLSIRSKETWMITQKCTVWNN
                     SFSRQLLMKDVLVVPALSVVHRLNCLPTRDIRSFHTSPRFQAAPVPLLLMILKPVQKL
                     LAIIVGRGIRKWWQALPPNKKELFKESVRKNKWKLFLGLSSFGLLFVVFYFTHLEVSP
                     VTGRSKLLLLGKEHFRLLSELEYEAWMEEFKNDMLTEKDTRYMAVKEVVHHLIECNKD
                     IPGISEINWVIHVVDSPDINAFVLPNGQVFIFTGLLNSVTDIHQLSFLLGHEIAHAVL
                     EHAAEKASLVHFLDFLGLIFLTMIWAICPRDSLALLGQWIQSKLQEFMFDRPYSRTLE
                     AEADKIGLQLAAKACVDVRASSVFWQQMEFAESLHGLPKLPEWLSTHPSHGNRAEHLD
                     RLIPQALKIREICNCPPLSGPDPRLLFKLSMKNFLEEAEKEDLNITVKPKMDTLPIQN
                     EKQIALTCIVEKRTGS"
     misc_feature    883..1464
                     /gene="OMA1"
                     /note="Peptidase M48C, integral membrane endopeptidase;
                     Region: M48C_Oma1_like; cd07331"
                     /db_xref="CDD:320690"
     misc_feature    order(1075..1080,1087..1089,1270..1272,1282..1284,
                     1411..1413)
                     /gene="OMA1"
                     /note="putative active site [active]"
                     /db_xref="CDD:320690"
     misc_feature    order(1075..1077,1087..1089,1270..1272,1411..1413)
                     /gene="OMA1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:320690"
ORIGIN      
        1 aggccgggcc tctttggcgg ggcgtacgct tgcgcgtagg tcgggtcaga ggaaccttcg
       61 ctttcgctac tgttaggata atcaagcaaa acaaagatga gcttcatctg tggactgcag
      121 tttgctgcta gaaactgtgt tttcttccga tttaatttac tgaccagctg gagaaaatgt
      181 aacacacaag ctgtaacctc actggaccgt catcaagtga aaattaacag tatagtaaat
      241 aagcctctgg gcctgggagt aaatcagggt gatagatgga catttttgcc tgaaaacttt
      301 catttctgta ggacttttaa taacaaaaga acaggttgcc tcttgagcat cagaagtaag
      361 gaaacttgga tgattaccca aaaatgtact gtgtggaata actctttctc aagacagtta
      421 ctgatgaaag acgttctagt agttcctgcg ctttcagtgg tgcatcgtct aaactgttta
      481 cccacaagag acatcaggag tttccatact tctccacggt ttcaagctgc tccggttcct
      541 ctcttgttga tgattcttaa accagtgcag aagctactgg ctatcattgt gggcaggggc
      601 ataaggaaat ggtggcaggc acttcctcct aacaagaagg aactatttaa agaaagtgta
      661 aggaagaata aatggaagtt attccttggt ttgagtagtt ttggattgct ttttgtagta
      721 ttttatttta cacacctgga agtgagtcca gtcacaggaa ggagcaagct tctattactg
      781 gggaaagaac atttcagact tttatcagaa ctggaatatg aagcgtggat ggaagaattt
      841 aaaaatgata tgctaactga gaaagacacc cgatacatgg ctgttaaaga agtggttcat
      901 catttaattg aatgcaataa agatattcca gggatctctg agatcaattg ggtaattcac
      961 gtggttgatt ccccagatat aaatgccttt gtgcttccaa acggacaagt gtttatcttc
     1021 actgggcttt taaatagtgt gactgatatt catcagctgt ccttccttct gggccacgaa
     1081 atagcacatg cagtacttga acatgccgca gaaaaggcta gcttggttca tttcctggat
     1141 ttcctaggtc tgatttttct cacaatgatt tgggccattt gtcctcgaga tagtttggca
     1201 cttttgggcc agtggattca gtctaaattg caggagttta tgtttgatag accatatagt
     1261 agaacactgg aggctgaagc tgacaaaatt ggactacaac ttgctgcgaa ggcttgtgtg
     1321 gacgtcagag ccagttcagt gttttggcaa cagatggaat ttgcagaaag cctccatggt
     1381 cttcccaagt tgccagaatg gttatctaca cacccttctc atggaaatcg agctgagcac
     1441 ttggatagac tcatacctca ggcactcaaa attagagaga tctgtaattg cccaccactt
     1501 tctggaccag accctcgatt actgttcaaa ctcagcatga agaattttct tgaagaagca
     1561 gagaaagaag acctaaatat cactgttaaa ccgaaaatgg atactctccc cattcaaaat
     1621 gagaagcaaa tagcattaac gtgtatagtt gagaaaagaa ctggcagttg aattaaaatt
     1681 tatgagacac caggtacatg aagaatgcag taatccttat cattttcatg ttacttttta
     1741 aaaaatattg tttgaaatga aaaaaaaaga ggatactcag ggtcaaatca tgtatattac
     1801 aggtattatc taaattctta tactaggtat ttatttttca taaaatattg atatatttta
     1861 atctatttta aaatatcttc aatgaggaaa atgtcacaga ataaatttat attacacatt
     1921 t
//
LOCUS       XM_032612323            3797 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus OMA1 zinc metallopeptidase (OMA1),
            transcript variant X7, mRNA.
ACCESSION   XM_032612323
VERSION     XM_032612323.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3797
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3797
                     /gene="OMA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 4
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743620"
     CDS             1973..3547
                     /gene="OMA1"
                     /codon_start=1
                     /product="metalloendopeptidase OMA1, mitochondrial isoform
                     X1"
                     /protein_id="XP_032468214.1"
                     /db_xref="GeneID:116743620"
                     /translation="MSFICGLQFAARNCVFFRFNLLTSWRKCNTQAVTSLDRHQVKIN
                     SIVNKPLGLGVNQGDRWTFLPENFHFCRTFNNKRTGCLLSIRSKETWMITQKCTVWNN
                     SFSRQLLMKDVLVVPALSVVHRLNCLPTRDIRSFHTSPRFQAAPVPLLLMILKPVQKL
                     LAIIVGRGIRKWWQALPPNKKELFKESVRKNKWKLFLGLSSFGLLFVVFYFTHLEVSP
                     VTGRSKLLLLGKEHFRLLSELEYEAWMEEFKNDMLTEKDTRYMAVKEVVHHLIECNKD
                     IPGISEINWVIHVVDSPDINAFVLPNGQVFIFTGLLNSVTDIHQLSFLLGHEIAHAVL
                     EHAAEKASLVHFLDFLGLIFLTMIWAICPRDSLALLGQWIQSKLQEFMFDRPYSRTLE
                     AEADKIGLQLAAKACVDVRASSVFWQQMEFAESLHGLPKLPEWLSTHPSHGNRAEHLD
                     RLIPQALKIREICNCPPLSGPDPRLLFKLSMKNFLEEAEKEDLNITVKPKMDTLPIQN
                     EKQIALTCIVEKRTGS"
     misc_feature    2759..3340
                     /gene="OMA1"
                     /note="Peptidase M48C, integral membrane endopeptidase;
                     Region: M48C_Oma1_like; cd07331"
                     /db_xref="CDD:320690"
     misc_feature    order(2951..2956,2963..2965,3146..3148,3158..3160,
                     3287..3289)
                     /gene="OMA1"
                     /note="putative active site [active]"
                     /db_xref="CDD:320690"
     misc_feature    order(2951..2953,2963..2965,3146..3148,3287..3289)
                     /gene="OMA1"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:320690"
ORIGIN      
        1 agaggaacct tcgctttcgc tactgttagg gtctgtcctg gtggggggac gcctttgcac
       61 ggctgttaag agtgggccgg gcccagggga gggggcagag tacgggaggt ggggtggagg
      121 gagcttggag gggcgctggg gttaggagcg gggacacttg ggggctcggt tgggttgggg
      181 tggcgaggcc tggggtggag gagggacgac ggggagccgg gctggagtaa agcacgaggg
      241 cggcgtgtgg agtcggggga gagggcgagt gggaaaggag gacgtggcag taaagtctcc
      301 ttttcccgcc tgatcccgtc ctggtgttga actgcgggga ccccagggtg ttaccctggc
      361 agcgcgggag ttgcaaatag gcaggtggct gcattttccg ggaagataag ctccctctcc
      421 tcccagcctt ctcattagcg gcgcttttta aaaagttgtg gttcttttta ccgcagtgtc
      481 gtgtgcgtca cagtgacacc ttcacccgta gaaaacctct tccagccgct tttggtatct
      541 tgagactcaa accatctctt ttacctgtcc ctcttaaagc agagaaagta aacgttttcc
      601 tacccaaacc ccgcagtgaa aaataggaaa ttccctgtct caacagttgt agggtattta
      661 aataatttct tcatgagctt gtctacaaat tcgctttttg tgctccttaa ataatgtcac
      721 ttgcctgcgt aaagtggaac aacagttgtg ttgtgccgtg cagtgctcaa tgagaaattt
      781 tagtctaggg agatgaaaac acttcattgg gaattcaggg attgaacaac tatggtgact
      841 ctgaccaatg ccatgtaacc ctcacgaaaa ggatttgggt tcatatccat cattctcagc
      901 tgtggtgaag gggtgcagtc tggcatttgg aagcttaaga accaactctg ttgccttcta
      961 atttattatt tttttaagct tccatcatgt gtgtactttg cttgaatgat tattttaaag
     1021 tacatgtgct atttttgcca atctgacagc tgtttccata gaaactaggg aggaaatagt
     1081 cactttcaga agagttgtta aaactgtctt ccaggcttca gccgtgagtg ccagtgagcg
     1141 ctgtacttgc tcattctgag atggtactta aagaattaag gatctgaaac gttcgtagag
     1201 gctaacaatc caaattgttt agttttctca catcattaat ttagtaatcc tggaagtctg
     1261 ccagctatgt ttgttgacct gctacagttc tttgaagagg atgtgtcagc cctgattctt
     1321 tcttctgctc tgtgtagtct agtgattgga tctttgaaaa tgtatagttt ttttctccca
     1381 ttctttaccc tttcttaagg atacagcagg gattacaaaa tatcaggtac tatttctgtt
     1441 tcaagtgaca cttgtaggtg atataaatga tagcgttttt gcttatatgt gtactacata
     1501 cagtgtttgg ggcttttgct aacttctgtg tcagtagaat actttaaatt tcacgttagt
     1561 tgtgagctgt gagcaggagt ttgcttgaca tgtgaacaga gctaagcagt ataaatagat
     1621 gtgcacagac agatgagagc ttttcttttc tgagaggtgt aggtaaatca gtgggtctgg
     1681 agcttcggaa tgggtgaagg aggggtaggg aaggtgcctg gagaaacagt gggaggtggt
     1741 attatgaggg gcttggtctg aaatatgcag tttattgaag cccatggaaa tcaatggtaa
     1801 ttacaaatat agttgccttt attgatttgg ggcttacaaa agtaataaca tatcctgtaa
     1861 aagtttaaac agcacggaaa tatatgagat ggaaatactg aatcccttac aaccatcatc
     1921 ctgccacccc aaataaccac tgtgaatggt ttgataatca agcaaaacaa agatgagctt
     1981 catctgtgga ctgcagtttg ctgctagaaa ctgtgttttc ttccgattta atttactgac
     2041 cagctggaga aaatgtaaca cacaagctgt aacctcactg gaccgtcatc aagtgaaaat
     2101 taacagtata gtaaataagc ctctgggcct gggagtaaat cagggtgata gatggacatt
     2161 tttgcctgaa aactttcatt tctgtaggac ttttaataac aaaagaacag gttgcctctt
     2221 gagcatcaga agtaaggaaa cttggatgat tacccaaaaa tgtactgtgt ggaataactc
     2281 tttctcaaga cagttactga tgaaagacgt tctagtagtt cctgcgcttt cagtggtgca
     2341 tcgtctaaac tgtttaccca caagagacat caggagtttc catacttctc cacggtttca
     2401 agctgctccg gttcctctct tgttgatgat tcttaaacca gtgcagaagc tactggctat
     2461 cattgtgggc aggggcataa ggaaatggtg gcaggcactt cctcctaaca agaaggaact
     2521 atttaaagaa agtgtaagga agaataaatg gaagttattc cttggtttga gtagttttgg
     2581 attgcttttt gtagtatttt attttacaca cctggaagtg agtccagtca caggaaggag
     2641 caagcttcta ttactgggga aagaacattt cagactttta tcagaactgg aatatgaagc
     2701 gtggatggaa gaatttaaaa atgatatgct aactgagaaa gacacccgat acatggctgt
     2761 taaagaagtg gttcatcatt taattgaatg caataaagat attccaggga tctctgagat
     2821 caattgggta attcacgtgg ttgattcccc agatataaat gcctttgtgc ttccaaacgg
     2881 acaagtgttt atcttcactg ggcttttaaa tagtgtgact gatattcatc agctgtcctt
     2941 ccttctgggc cacgaaatag cacatgcagt acttgaacat gccgcagaaa aggctagctt
     3001 ggttcatttc ctggatttcc taggtctgat ttttctcaca atgatttggg ccatttgtcc
     3061 tcgagatagt ttggcacttt tgggccagtg gattcagtct aaattgcagg agtttatgtt
     3121 tgatagacca tatagtagaa cactggaggc tgaagctgac aaaattggac tacaacttgc
     3181 tgcgaaggct tgtgtggacg tcagagccag ttcagtgttt tggcaacaga tggaatttgc
     3241 agaaagcctc catggtcttc ccaagttgcc agaatggtta tctacacacc cttctcatgg
     3301 aaatcgagct gagcacttgg atagactcat acctcaggca ctcaaaatta gagagatctg
     3361 taattgccca ccactttctg gaccagaccc tcgattactg ttcaaactca gcatgaagaa
     3421 ttttcttgaa gaagcagaga aagaagacct aaatatcact gttaaaccga aaatggatac
     3481 tctccccatt caaaatgaga agcaaatagc attaacgtgt atagttgaga aaagaactgg
     3541 cagttgaatt aaaatttatg agacaccagg tacatgaaga atgcagtaat ccttatcatt
     3601 ttcatgttac tttttaaaaa atattgtttg aaatgaaaaa aaaagaggat actcagggtc
     3661 aaatcatgta tattacaggt attatctaaa ttcttatact aggtatttat ttttcataaa
     3721 atattgatat attttaatct attttaaaat atcttcaatg aggaaaatgt cacagaataa
     3781 atttatatta cacattt
//
LOCUS       XM_032612352             576 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NADH:ubiquinone oxidoreductase subunit S5
            (NDUFS5), mRNA.
ACCESSION   XM_032612352
VERSION     XM_032612352.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..576
                     /gene="NDUFS5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743642"
     CDS             137..451
                     /gene="NDUFS5"
                     /codon_start=1
                     /product="NADH dehydrogenase [ubiquinone] iron-sulfur
                     protein 5"
                     /protein_id="XP_032468243.1"
                     /db_xref="GeneID:116743642"
                     /translation="MPFFDVQKRLGLDLDRWMTIQSAEQPNKIPGRCHAFEKEWIECA
                     HGIGGIRAEKECKIEYDDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPQHLGKE
                     DP"
     misc_feature    137..424
                     /gene="NDUFS5"
                     /note="NADH:ubiquinone oxidoreductase, NDUFS5-15kDa;
                     Region: Ndufs5; pfam10200"
                     /db_xref="CDD:431131"
ORIGIN      
        1 ggaaggcagg tcggctcccg tcgtcgcgct gcaagcgtcg cgctgcgggc ttcctttgcg
       61 gcaggcctca ttgtcgcctg aggatcttct agtaacggcg gtcagcaagg agtcaagggc
      121 acagctgctg gacgccatgc ctttctttga tgtgcagaaa aggctgggtc ttgacttaga
      181 ccgctggatg acaatccaga gtgctgagca gccaaacaag attccaggtc gatgccatgc
      241 ttttgaaaaa gaatggatag agtgcgcaca tggtattggt ggtattcgcg cggagaaaga
      301 gtgcaagata gaatatgatg atttcgtaga gtgtctactt cgacagaaaa cgatgaaacg
      361 tctgagtgcc atcaagaggc agcgggataa gctaataaag gaagggaagt acacacctcc
      421 acctcagcac ctgggcaagg aggatccttg accctgagcc gagcagctgc cggtggctgg
      481 aggctgattt tcacgttctc tcttctctgc tggaaacttt acgtactgaa aacctttttg
      541 tgaaagtgtc taaaaataaa ggattgctct ctccta
//
LOCUS       XM_032612367            1110 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Kruppel like factor 17 (KLF17), mRNA.
ACCESSION   XM_032612367
VERSION     XM_032612367.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1110
                     /gene="KLF17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins"
                     /db_xref="GeneID:116743644"
     CDS             19..1110
                     /gene="KLF17"
                     /codon_start=1
                     /product="Krueppel-like factor 17"
                     /protein_id="XP_032468258.1"
                     /db_xref="GeneID:116743644"
                     /translation="MSILDVSSSPRNSGVHASWNHGPSGIQRVPQGIELETTSLVSAE
                     TPRQNASEMGSHFSMLLPDHGVTYCPQVTFTPSQMIYTEGMSPSQTEMMIFKGPQAMP
                     LGEPSIPGVATTFGGNLRMSPNGPPVSPASGIPMMSHIRMRTMPYSGLPTVPSNGGPL
                     TPKTLLDPTMPSTEALAMLRSLDQMLPPRNPHNYGMPPAESPLLLALESQGSLVSQPV
                     SQEDPFLPKQPLPAPRRAEQYSGAQERPPRRRSPVSRPYRCDYENCEKAYTKRSHLVS
                     HQRKHTGERPYKCMWEACTWSFFRSDELRRHTRIHTKYRPHKCDQCGRQFMRSDHLRQ
                     HQRTHMRMPASPDPPADSGRMAGPPAPGL"
     misc_feature    19..801
                     /gene="KLF17"
                     /note="N-terminal domain of Kruppel-like factor 17;
                     Region: KLF17_N; cd21574"
                     /db_xref="CDD:410567"
     misc_feature    781..>993
                     /gene="KLF17"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    793..861
                     /gene="KLF17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(793..795,808..810,847..849,859..861)
                     /gene="KLF17"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(814..816,820..822,826..828,832..837,844..849,
                     856..858,904..906,910..912,922..927,934..939,946..948,
                     988..990,994..996,1000..1002,1006..1011,1018..1023,
                     1030..1032)
                     /gene="KLF17"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    883..951
                     /gene="KLF17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    925..996
                     /gene="KLF17"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    967..1035
                     /gene="KLF17"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    973..1035
                     /gene="KLF17"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 aaggatactg agaagtcaat gtccatcttg gatgtgtctt catctcccag aaacagtgga
       61 gtgcacgcct cttggaacca tggcccatca ggcattcaac gcgtccctca gggcatagag
      121 ctggagacga cctccttggt ctctgctgag acacccaggc agaatgccag tgaaatgggg
      181 tcacacttca gtatgttgct gcctgaccac ggtgtgacct actgccccca agtgactttc
      241 actccttccc agatgattta cactgaggga atgtctcctt cccagacaga aatgatgatt
      301 ttcaaggggc cccaggcgat gcccttagga gagcccagta ttccaggggt ggccacgacc
      361 tttggtggga atctaaggat gtcccccaac gggccgccag tctcacctgc cagtggaatc
      421 ccaatgatgt cccacatcag aatgcgaaca atgccttatt ctggcctccc aacagtacct
      481 tctaatggag gccctttaac acctaaaaca ttattggatc caaccatgcc ttccactgag
      541 gccctggcaa tgctccgctc tttggatcag atgttgcccc ctagaaaccc ccacaactat
      601 gggatgcccc cagctgaatc gccattattg ctggctttgg aatcccaggg ctctcttgtg
      661 agccagccag tctcccagga agaccccttc ctacctaagc agcccttacc tgctccacgg
      721 agagcagagc agtactccgg ggcccaggaa aggcctccca gaaggagatc cccagtttca
      781 aggccttacc gctgtgacta tgagaactgt gaaaaagctt acactaagcg ctcccacctc
      841 gtgagtcacc aacgcaaaca cacaggtgaa aggccctata aatgcatgtg ggaagcctgt
      901 acttggtcct tcttccgttc tgatgaactt agaagacata ctcggataca caccaaatac
      961 cgaccacata aatgtgacca gtgcggccga cagttcatga gatccgacca tctcaggcaa
     1021 caccaaagga ctcatatgcg gatgccagca tccccagacc caccggctga cagtggacgt
     1081 atggctggtc ctcctgctcc tggtctttag
//
LOCUS       XM_032612377            2010 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UbiA prenyltransferase domain containing
            1 (UBIAD1), mRNA.
ACCESSION   XM_032612377
VERSION     XM_032612377.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2010
                     /gene="UBIAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743651"
     CDS             344..1360
                     /gene="UBIAD1"
                     /codon_start=1
                     /product="ubiA prenyltransferase domain-containing protein
                     1"
                     /protein_id="XP_032468268.1"
                     /db_xref="GeneID:116743651"
                     /translation="MAALQVPGEKVNIQAGETAKVGDRDLLGNGCPEQDRPPQRSWRQ
                     KCASYVLALRPWSFSASLTPVALGSALAYRSQGVLDPRLLVGCAVAVLAVHGAGNLVN
                     TYYDFSKGIDHKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSPLKLEHL
                     ALIYFGGLSGSFLYTGGIGFKYLALGDLIILITFGPLAVMFAYAVQVGSLAVFPLVYA
                     IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTLSYMLYNTLLFLPYLIFSILA
                     VHCSISLALPLLTIPMAFSLERQFRSQTFNKLPQRTAKLNLLLGLFYVSSIILAPAGS
                     LPKL"
     misc_feature    491..1315
                     /gene="UBIAD1"
                     /note="1,4-Dihydroxy-2-naphthoate octaprenyltransferase;
                     Region: PT_UbiA_UBIAD1; cd13962"
                     /db_xref="CDD:260125"
ORIGIN      
        1 gtcccgtccc tgtttcccgg cgggcctaca gtggcgggtg cccaagatgg tcgctcccgc
       61 ggctgcgtag aggcggcagc ggttcagtct cgggctgtag ggcgaggcgg gcgtctggaa
      121 gcggtcctcg cccaggtgac aggaggtcgg ggaggtgccg ccgagcctcg tggggtgcca
      181 ggcccgctcg ctgccgtccc cgggccccgc cgcctccctg tccctgcccc cgggtggaac
      241 cgaagaaggt caggtccgcc gccccgcctg tactcgcctc agggcggacg ctgtgtgtgg
      301 gtggctcact gtttaacatt gacttcaccc gagtgcgttc tccatggcgg ccttgcaggt
      361 cccgggggag aaggttaaca tccaggcagg agagacggcc aaggtcgggg acagggacct
      421 gttggggaac ggctgtccgg agcaggacag accgccgcag cgctcgtgga ggcagaagtg
      481 cgcctcctat gttctggccc tgcggccctg gagcttcagt gcctcactca ccccggtagc
      541 cctgggcagt gccctggcct acagatccca gggcgtcctg gatcccaggc tactggtggg
      601 ttgtgccgta gctgtcctcg ctgtgcacgg ggctggaaat ttggtcaaca cttactacga
      661 cttttccaag ggcattgacc acaaaaagag tgatgacagg acactggtgg accgaatctt
      721 ggagccccag gatgtcgtcc ggtttggagt cttcctctac accttgggct gtgtctgtgc
      781 tgcttgcctc tactacctgt cccctctgaa actggagcac ttagctctca tctacttcgg
      841 aggcctgtct ggctcctttc tctacacagg aggaattgga ttcaagtacc tggctctggg
      901 agacctcatc atcctcatca cttttggccc gctggctgtg atgttcgcct acgccgtcca
      961 ggtggggtcc ctggcggtct tcccgctggt ctacgccatc cccctcgccc ttagcaccga
     1021 ggccatcctc cattccaaca ataccaggga catggagtct gaccgggagg ctggcatcgt
     1081 cacgctcgcc atcctcatcg gccccactct ctcctacatg ctctacaaca cgctgctctt
     1141 cctgccctac ctgatcttca gcatcctggc tgtgcactgc agcatcagcc tggcactgcc
     1201 cctgctcacc attcccatgg ccttttccct tgagagacag ttccgaagcc agactttcaa
     1261 caaactgccc cagaggactg ccaaactcaa ccttctgctg ggcctcttct acgtttccag
     1321 catcattctg gcaccggcag gcagtctgcc caaactctaa ggggatcagt agccgcacgc
     1381 cacaacgtgt ccccctttct tagaacgtgt tgaaggcaga gtgtctgagg agggaaggtg
     1441 atttggcagt gaggggctta aggatggctt gtgaacgccc acctttttta tgattacatt
     1501 cttaaagaga atgtttcgtt tttgttattt tgttccgttt tatggggact tcttgaaacc
     1561 actctgctgt cagaacaagg taaattggac gcatggccct tgttttattt ataatttcca
     1621 ctagagggtg ttgtcaggtc acttttagtg ggctacgagg ccctacgact tggtgaagga
     1681 accgcgcagg ttggcctcct gtcctgaaag agccatagta actgggccaa gtaactgggc
     1741 cagtaaagtg tcctctgctg ttttggtctg gcaggatgcg ttgatgatcc ccagtgacaa
     1801 ggagtacctg tctctcaccc tgagcacttg ggtcctgaaa tacactacct tgagagagaa
     1861 ggcccctcat taacagcccg accgggctct aggctttttg cctaaattgt gattcagacc
     1921 cttttgtcct cacttcactt attggcacag ttgaggaaaa gcatcagatg accctgcagc
     1981 aggacagtgg agccgagggc ttggaaggaa
//
LOCUS       XM_032612392            1880 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription factor B2, mitochondrial
            (TFB2M), mRNA.
ACCESSION   XM_032612392
VERSION     XM_032612392.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-437               VOSU01000011.1     161057399-161057835 c
            438-526             VOSU01000011.1     161056610-161056698 c
            527-680             VOSU01000011.1     161053078-161053231 c
            681-796             VOSU01000011.1     161052630-161052745 c
            797-797             "N"                1-1
            798-829             VOSU01000011.1     161052598-161052629 c
            830-919             VOSU01000011.1     161050196-161050285 c
            920-982             VOSU01000011.1     161047435-161047497 c
            983-1134            VOSU01000011.1     161044163-161044314 c
            1135-1880           VOSU01000011.1     161041718-161042463 c
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1880
                     /gene="TFB2M"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 95% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     8 samples with support for all annotated introns"
                     /db_xref="GeneID:116743655"
     CDS             128..1312
                     /gene="TFB2M"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: dimethyladenosine
                     transferase 2, mitochondrial"
                     /protein_id="XP_032468283.1"
                     /db_xref="GeneID:116743655"
                     /translation="MWVPGVGLLSRLMLSALTRAGRFCILKSGAVRLMDVPAGNRRGL
                     SDYYPHLMPSVGFGKSSSRVYRCRSETKRYITSPRVAETLVRILRGKRKSCQLFLECN
                     PGPGILTRALLESGAKVVALESDETFIPHLKSLGKKVNGRLEVVYCDFFKLDPRSRGI
                     LTPPVMTSDMLFQYLGIEAQPWSKGAPLKAIGILPPKNERSALWKLLHDLYSCTSIYK
                     YGRLEXNLFITEKECRKIMANPQNPGLYQALSVLCQIACGIKLLHTESCLSFGTYTAN
                     GQLAKQKHRESLEQNLCFIQLTPHRNLFTGTLTPFNYDVFFHMLRQCFMKRNAKLIDH
                     LHSLSPIDAMHILKQIKKNKDVKVIDMYPEDFQHLFETIECSKDDNYKWLYDDFMEDV
                     II"
     misc_feature    434..1249
                     /gene="TFB2M"
                     /note="16S rRNA A1518 and A1519 N6-dimethyltransferase
                     RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase
                     activity) [Translation, ribosomal structure and
                     biogenesis]; Region: RsmA; COG0030"
                     /db_xref="CDD:439801"
ORIGIN      
        1 ttggcgtgtt tacttccgcc ggcctagacc cggggcgagg agatgtagca catgggcttc
       61 cctgtatgga gttcgtcgag gatgtaacga ccctgggtaa cactgggaca ggccttagag
      121 ggtgagaatg tgggtcccag gggtgggact tctctcgagg ctgatgctgt cagccttgac
      181 ccgcgctggg cgcttttgca ttttgaagtc gggagcggtg aggctgatgg acgtcccggc
      241 ggggaaccgc cgtggcttgt ctgactacta cccgcacctg atgcccagtg tgggatttgg
      301 aaaatcgtcc tcgcgtgttt acagatgccg ctcagagacc aagcggtaca taaccagccc
      361 tagagtggct gagaccttgg tgcggatcct acggggaaaa cgaaaatctt gccagctatt
      421 cctggaatgc aatccaggtc ctggaatcct gacacgagca ttgcttgaaa gtggtgccaa
      481 agtggttgcc cttgaaagtg acgagacttt tattccacat ttgaagtcct taggaaaaaa
      541 ggtgaatgga agactagaag tggtctactg tgacttcttt aaactggatc ctagaagtcg
      601 tggaatacta acacctcccg ttatgacttc agatatgctt tttcagtatt tgggaataga
      661 agcacagcct tggtcaaaag gtgccccttt aaaagcaatt gggatcttac cacctaaaaa
      721 tgagagaagt gcactttgga aacttttaca tgacctatat tcctgtactt ccatatataa
      781 atatggacga ctagaancta atttgtttat tactgaaaag gaatgccgga aaataatggc
      841 aaatccccaa aatccaggct tgtatcaagc attaagtgtg ctctgtcaaa tagcttgcgg
      901 gattaagctc ctgcatacag agtcttgctt atcatttggc acatataccg caaatgggca
      961 gctggcaaag caaaagcata gggaatcatt agaacaaaac ctgtgtttta ttcaactgac
     1021 tcctcatagg aatttattta caggaacctt aacacctttt aactatgatg tgttttttca
     1081 catgttaagg cagtgtttta tgaaacgcaa tgccaagcta atagaccatt tacattcatt
     1141 gagtccaatt gatgcaatgc atatattgaa gcaaattaaa aaaaataaag atgtgaaagt
     1201 aatagatatg taccctgaag actttcagca cctttttgaa accatagagt gttccaaaga
     1261 tgataactat aagtggctat atgatgactt catggaagat gtgatcatat agagaagtgg
     1321 actgataaga cattaactgg agctgtttat ttatttggaa attatggcac aaatgaaaaa
     1381 gaactgagtt tgaaaaactc acatcctttc aacagaagat aacttcttgt tttgcacagc
     1441 taggcagatc aattcttgtg ccattgatac cattactgta ttggataaaa taatggctgc
     1501 tattttattc aaactgaata aaaggaaaac ttcagttaat tgtggatttg atcaaattgg
     1561 atttgttttg ttttaaattc ctatctacta taagcatact ggtagttata gggtattggc
     1621 agatgaaatt tagttttaga aattcttttg gccaaatatc ttacgttata cttaaatatt
     1681 ccattttcac tgtcgatttt tatatcttcc tgggggagca gaagagtttg tacgtaatta
     1741 aacttggaaa gtaaactgat ttagtgggtt tttttacttt tcagtttgtt gaaatgtatt
     1801 atcaagtact gtacaatgaa attatttaaa ttttaatatg gtttaaattt ttttagaaat
     1861 taaaatattt taagtaataa
//
LOCUS       XM_032612404            4242 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription termination factor 2
            (TTF2), transcript variant X1, mRNA.
ACCESSION   XM_032612404
VERSION     XM_032612404.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4242
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4242
                     /gene="TTF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743659"
     CDS             34..3528
                     /gene="TTF2"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X1"
                     /protein_id="XP_032468295.1"
                     /db_xref="GeneID:116743659"
                     /translation="MEVVGCPQHGTLCFLKTGVRDGPNKGKSFYVCRADTCSFVQATD
                     IPVSHCLLHEDFAVELQGLFLSQGKKEYRLFFRCVRSKAEGKQWCGNIPWQDLNSEEH
                     SVTSKSQHASEISRYPSSQQRNPFKLIDKSQEPSLRKQFIKGEDEEKTADKKQREKRD
                     PLLDQKKEQKPESKCWMEKDLSSGLVVKEKQSAVQETQRGEKTEFHSAAKEVEGVHKR
                     NLSETTSKQVRGNELREPSASQERSNGERHSLQKESEPPREKETQPLPRIVHSQHPIS
                     QSLKGGHLSKEHPKSWEARETKAKNDTSTQTLHKSLLQGHLQAQPETRGTPAPKGPAA
                     QPAPLAAGHPQGEMRDADTSSGDSEEDDVFVSSKPGSPLLFDLTLDSQKNLQFPGQSV
                     QRKISPDSGVSKKGESSDPEAQRVYLTTQLKQKKSTLASVNIQALPDKGQKLFKQLQE
                     LEDALSALALSPEQAGTNEKSNTQVPQQSNFTKTTTDPPHLVPPKPLQGRDLQPLGCL
                     GLKAARQEAAGGSDRCCGGPMSQGRLRAVWQITSEAIDELHRSLESRPGETAVAEDPA
                     GLKIPLLPHQKQALAWLLWREGQKPRGGILADDMGLGKTLTMIALILTQKNQEKNKEK
                     DKTTALAWLSTNDSSEFTSHGTLVICPASLIHHWKSEVEKRVSSNKLRVYLYHGPNRD
                     QRAKVLSTYDIVVTTYSLLAKEIPTKKQEGEMPGANLSVKGVSSPLLRVVWARIILDE
                     AHNVKNPRVQTSLAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDELSLWRS
                     QVDNGSKKGEERLNILTKSLLLRRTKDQLDPTGKPLVVLPQRKFQLHHLKLSEDEENV
                     YSVLFARSRSALQSYLKRHESGGGQSGRSPDNPFSRVAQEFGSSGPGLSVAADSQTSS
                     TAHILSQLLRLRQCCCHLSLLKSALDLKELKSEGLVLSLEEQLRDLTLSEFHNSEPSA
                     SISLNGKCFNVELFDDRRESTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLKVVTLH
                     LKRHGLTYSTIDGSVNPKQRMDLVEAFNKSRGPQVMLISLLAGGVGLNLTGGNHLFLL
                     DMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKRDLAKQILSGT
                     GEVVTKLTLADLKVLFGI"
     misc_feature    49..165
                     /gene="TTF2"
                     /note="GRF zinc finger; Region: zf-GRF; cl46396"
                     /db_xref="CDD:480736"
     misc_feature    <1630..3465
                     /gene="TTF2"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     Region: HepA; COG0553"
                     /db_xref="CDD:440319"
     misc_feature    1747..2499
                     /gene="TTF2"
                     /note="DEAH-box helicase domain of TTF2; Region:
                     DEXHc_TTF2; cd18072"
                     /db_xref="CDD:350830"
     misc_feature    order(1831..1851,2014..2016,2248..2253)
                     /gene="TTF2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350830"
ORIGIN      
        1 ggtggtttcg gggaagagga aagaagcagt gggatggaag tagttgggtg tccacagcac
       61 gggaccttat gttttctgaa gaccggcgtc cgagatggcc cgaataaagg aaagagcttc
      121 tacgtgtgcc gggcggacac atgcagcttc gtgcaggcca ccgacattcc tgtttctcat
      181 tgtttattgc atgaggactt tgcagtagag cttcagggtc tgtttctatc acagggcaag
      241 aaagaataca ggttattctt ccgatgtgtt agaagtaagg cagaggggaa gcaatggtgt
      301 ggaaatatcc catggcagga tcttaattcc gaagaacatt ctgtaaccag taagtctcag
      361 catgcctctg agatatctcg ttatccttcc agccagcaga gaaacccgtt caagttaatt
      421 gacaagagtc aagaaccatc cctccggaag cagttcatca aaggtgaaga tgaggaaaag
      481 acagctgata agaagcaaag ggaaaagaga gatccactcc tggatcaaaa gaaggaacag
      541 aagcctgaat ctaagtgctg gatggagaaa gatctctcat ctggcctggt ggtaaaggaa
      601 aaacaatcgg ctgttcaaga gacgcagcga ggggagaaga cagagtttca tagtgctgca
      661 aaggaggttg aaggggtgca caaaagaaac ctttctgaga cgacatccaa acaggtccgt
      721 gggaatgagc tgagagaacc atctgcatct caggagaggt caaatggtga gaggcattct
      781 ctccaaaaag aatcagaacc tccaagggaa aaggaaactc agcctttgcc tcgaattgtt
      841 cacagtcaac acccaataag ccagtccctg aaagggggac acctcagcaa ggagcacccc
      901 aagagctggg aggctagaga aacaaaggca aagaatgaca caagcacgca gaccctccat
      961 aaaagtctgc tccagggcca tttgcaggca cagccggaga cccggggcac gcccgctcca
     1021 aagggaccgg ctgctcagcc tgcaccgctg gccgcagggc acccccaggg agagatgcga
     1081 gacgccgata caagcagtgg tgacagtgag gaagatgatg tttttgtttc ctctaagcca
     1141 gggagcccct tgctctttga cttgactcta gactcacaga agaaccttca attccctggt
     1201 cagagtgtgc aaagaaaaat ttctcctgac tcaggcgttt ccaagaaggg agaatcttca
     1261 gacccagaag cccaacgtgt gtacctcaca acacagctga aacaaaagaa gagcacattg
     1321 gcatctgtga acatccaggc tcttccagac aagggtcaga agttgttcaa gcaacttcag
     1381 gagctggagg atgcgctgag tgccctggcc ctctccccag agcaagcagg cactaatgag
     1441 aagagtaaca ctcaagtacc acagcagagt aacttcacca aaacgaccac tgatcctccc
     1501 cacttggtgc ctcccaaacc cctgcagggc cgggatctcc agcctctggg ttgtctagga
     1561 ctgaaggctg cccgccagga ggctgctgga gggtctgatc ggtgctgtgg aggccctatg
     1621 agccaaggtc gccttcgcgc agtgtggcaa atcacaagtg aagccattga tgagctgcat
     1681 cgatcacttg agtcacgtcc tggcgagaca gctgtggcag aggatccagc tgggttgaag
     1741 atccctttgc tgccgcacca gaagcaggca ttagcctggc tgctatggcg ggaaggtcag
     1801 aagccacgag gaggaatcct ggcggatgat atggggttag gaaaaaccct gacaatgatt
     1861 gcactcatcc tgacccagaa gaatcaagag aaaaacaaag aaaaggacaa aaccacggct
     1921 ttggcttggc tttccacaaa tgactcctct gagttcactt cccatggaac actagtcatc
     1981 tgtcctgctt ccctgatcca tcattggaaa agtgaggtcg agaaacgtgt gagcagcaac
     2041 aaactaagag tctatctgta tcatgggcca aaccgggatc aacgtgcaaa agtcctctcc
     2101 acatatgaca tcgtggtcac tacctacagc cttctggcca aggagattcc cacaaagaag
     2161 caagagggag agatgccagg tgcaaacctc agtgtgaagg gtgtctcatc acctttgctt
     2221 cgagtagtct gggctcgaat catattggat gaagctcaca atgttaagaa tccccgagtg
     2281 cagacttcct tggctgtgtg taagctccag gcccaagccc gttgggctgt cactggaacc
     2341 cccattcaga acaacttgtt ggacatgtat tcactgctga aatttctccg ttgttctcca
     2401 tttgatgaac tcagtctgtg gaggagtcag gttgacaatg gttcaaagaa aggagaagaa
     2461 cggttaaata ttttaaccaa gagccttttg ctgaggagaa caaaagacca gctggacccc
     2521 accggcaagc ccttggtggt gctcccccag cgtaaatttc agttgcacca tttaaagctt
     2581 tctgaagatg aagaaaatgt ttatagtgtc ctttttgcaa gatcaaggtc agctctgcaa
     2641 tcctatctaa aaagacatga aagtgggggc ggccaatctg gaagaagccc tgataatcca
     2701 ttcagtagag tggcccagga gtttgggtcc agtgggcctg ggctctccgt ggcagcagac
     2761 tcgcagacat ctagcaccgc ccacatactg tcacagttgc tgagactccg ccagtgttgt
     2821 tgtcatcttt ctctactgaa gtcggccctg gatctgaaag agctgaagag tgaaggcctg
     2881 gtcctttccc tggaagagca gctcagagac ttgactttgt ccgaattcca caactcagag
     2941 ccgtctgcct ccatttccct taacggcaaa tgcttcaatg tggagctttt tgacgacagg
     3001 agagagagca ccaagatttc atctctgttg gcagaattgg aggcaatccg aagaaattca
     3061 gggtcccaaa agagtgtcat cgtctctcag tggaccagca tgctgaaggt tgtaaccttg
     3121 caccttaaga ggcatggact gacttattcc accatcgatg gctctgttaa ccccaaacag
     3181 agaatggact tggtggaggc atttaataaa tccaggggcc ctcaggttat gctaatctct
     3241 ctcttggctg gaggtgttgg tctaaacctg actggaggaa accatctttt tcttctggac
     3301 atgcactgga atccgtcact cgaagatcaa gcttgtgacc gaatttaccg agtagggcag
     3361 cagaaagatg tagtcataca cagatttgtt tgtgagggaa cagtggaaga gaagatcttg
     3421 cagctccaag aaaaaaagag agatttggcc aaacagattc tatcaggaac tggagaagtt
     3481 gtcaccaagc tcaccttggc cgatctcaaa gtcctttttg gcatctaact tcctgtttat
     3541 ggagctcaga atagtgccat tgttggtttg tattaggatc tggggagaat gacctaaccc
     3601 tggtcctttg agctctcgtt ggcattcagt ttcaccttca agccctcctc aaagtgagga
     3661 tcagttacca tgttaaccac ttggttaacc agtcatgtta gtcaatcaac gtatttaatg
     3721 tgtgacacag aaaccaataa atgacttcag ataagagaaa atgctttaga gttagagaat
     3781 ttggaaaaca gccctgggag agttgtacct aagcttcagt aaaagctcaa aaagccctct
     3841 gttgcttttc tcttctcagc tggtggggac ccaatgttac tgccttttct gacacaggct
     3901 ccatcccatc tcttcatctc ctgccagtga ggctgctcat ataaccatct ctttatgggc
     3961 tgagcagaag caggtctctg cgtaatatgt agatggttag tatttgtatc atcgtatcat
     4021 ttagaatttg gtatcatatc atttagtatt attttatatt gctatcatat catgtatttg
     4081 cgtcataaat tttaattttt gtatcatttt tctagtattt gtatttttac aaatttacag
     4141 tatttgtagc acttagtatc attgtttcat ttagtattat tgtgtcattt agtacttgta
     4201 ttatcattgg cataatccaa taaacatgtg tttgacagtg ta
//
LOCUS       XM_032612414            4239 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription termination factor 2
            (TTF2), transcript variant X2, mRNA.
ACCESSION   XM_032612414
VERSION     XM_032612414.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4239
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4239
                     /gene="TTF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743659"
     CDS             34..3525
                     /gene="TTF2"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X2"
                     /protein_id="XP_032468305.1"
                     /db_xref="GeneID:116743659"
                     /translation="MEVVGCPQHGTLCFLKTGVRDGPNKGKSFYVCRADTCSFVQATD
                     IPVSHCLLHEDFAVELQGLFLSQGKKEYRLFFRCVRSKAEGKQWCGNIPWQDLNSEEH
                     SVTSKSQHASEISRYPSSQQRNPFKLIDKSQEPSLRKQFIKGEDEEKTADKKQREKRD
                     PLLDQKKEQKPESKCWMEKDLSSGLVVKEKQSAVQETQRGEKTEFHSAAKEVEGVHKR
                     NLSETTSKQVRGNELREPSASQERSNGERHSLQKESEPPREKETQPLPRIVHSQHPIS
                     QSLKGGHLSKEHPKSWEARETKAKNDTSTQTLHKSLLQGHLQAQPETRGTPAPKGPAA
                     QPAPLAAGHPQGEMRDADTSSGDSEEDDVFVSSKPGSPLLFDLTLDSQKNLQFPGQSV
                     QRKISPDSGVSKKGESSDPEAQRVYLTTQLKQKKSTLASVNIQALPDKGQKLFKQLQE
                     LEDALSALALSPEQGTNEKSNTQVPQQSNFTKTTTDPPHLVPPKPLQGRDLQPLGCLG
                     LKAARQEAAGGSDRCCGGPMSQGRLRAVWQITSEAIDELHRSLESRPGETAVAEDPAG
                     LKIPLLPHQKQALAWLLWREGQKPRGGILADDMGLGKTLTMIALILTQKNQEKNKEKD
                     KTTALAWLSTNDSSEFTSHGTLVICPASLIHHWKSEVEKRVSSNKLRVYLYHGPNRDQ
                     RAKVLSTYDIVVTTYSLLAKEIPTKKQEGEMPGANLSVKGVSSPLLRVVWARIILDEA
                     HNVKNPRVQTSLAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDELSLWRSQ
                     VDNGSKKGEERLNILTKSLLLRRTKDQLDPTGKPLVVLPQRKFQLHHLKLSEDEENVY
                     SVLFARSRSALQSYLKRHESGGGQSGRSPDNPFSRVAQEFGSSGPGLSVAADSQTSST
                     AHILSQLLRLRQCCCHLSLLKSALDLKELKSEGLVLSLEEQLRDLTLSEFHNSEPSAS
                     ISLNGKCFNVELFDDRRESTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLKVVTLHL
                     KRHGLTYSTIDGSVNPKQRMDLVEAFNKSRGPQVMLISLLAGGVGLNLTGGNHLFLLD
                     MHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKRDLAKQILSGTG
                     EVVTKLTLADLKVLFGI"
     misc_feature    49..165
                     /gene="TTF2"
                     /note="GRF zinc finger; Region: zf-GRF; cl46396"
                     /db_xref="CDD:480736"
     misc_feature    <1627..3462
                     /gene="TTF2"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     Region: HepA; COG0553"
                     /db_xref="CDD:440319"
     misc_feature    1744..2496
                     /gene="TTF2"
                     /note="DEAH-box helicase domain of TTF2; Region:
                     DEXHc_TTF2; cd18072"
                     /db_xref="CDD:350830"
     misc_feature    order(1828..1848,2011..2013,2245..2250)
                     /gene="TTF2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350830"
ORIGIN      
        1 ggtggtttcg gggaagagga aagaagcagt gggatggaag tagttgggtg tccacagcac
       61 gggaccttat gttttctgaa gaccggcgtc cgagatggcc cgaataaagg aaagagcttc
      121 tacgtgtgcc gggcggacac atgcagcttc gtgcaggcca ccgacattcc tgtttctcat
      181 tgtttattgc atgaggactt tgcagtagag cttcagggtc tgtttctatc acagggcaag
      241 aaagaataca ggttattctt ccgatgtgtt agaagtaagg cagaggggaa gcaatggtgt
      301 ggaaatatcc catggcagga tcttaattcc gaagaacatt ctgtaaccag taagtctcag
      361 catgcctctg agatatctcg ttatccttcc agccagcaga gaaacccgtt caagttaatt
      421 gacaagagtc aagaaccatc cctccggaag cagttcatca aaggtgaaga tgaggaaaag
      481 acagctgata agaagcaaag ggaaaagaga gatccactcc tggatcaaaa gaaggaacag
      541 aagcctgaat ctaagtgctg gatggagaaa gatctctcat ctggcctggt ggtaaaggaa
      601 aaacaatcgg ctgttcaaga gacgcagcga ggggagaaga cagagtttca tagtgctgca
      661 aaggaggttg aaggggtgca caaaagaaac ctttctgaga cgacatccaa acaggtccgt
      721 gggaatgagc tgagagaacc atctgcatct caggagaggt caaatggtga gaggcattct
      781 ctccaaaaag aatcagaacc tccaagggaa aaggaaactc agcctttgcc tcgaattgtt
      841 cacagtcaac acccaataag ccagtccctg aaagggggac acctcagcaa ggagcacccc
      901 aagagctggg aggctagaga aacaaaggca aagaatgaca caagcacgca gaccctccat
      961 aaaagtctgc tccagggcca tttgcaggca cagccggaga cccggggcac gcccgctcca
     1021 aagggaccgg ctgctcagcc tgcaccgctg gccgcagggc acccccaggg agagatgcga
     1081 gacgccgata caagcagtgg tgacagtgag gaagatgatg tttttgtttc ctctaagcca
     1141 gggagcccct tgctctttga cttgactcta gactcacaga agaaccttca attccctggt
     1201 cagagtgtgc aaagaaaaat ttctcctgac tcaggcgttt ccaagaaggg agaatcttca
     1261 gacccagaag cccaacgtgt gtacctcaca acacagctga aacaaaagaa gagcacattg
     1321 gcatctgtga acatccaggc tcttccagac aagggtcaga agttgttcaa gcaacttcag
     1381 gagctggagg atgcgctgag tgccctggcc ctctccccag agcaaggcac taatgagaag
     1441 agtaacactc aagtaccaca gcagagtaac ttcaccaaaa cgaccactga tcctccccac
     1501 ttggtgcctc ccaaacccct gcagggccgg gatctccagc ctctgggttg tctaggactg
     1561 aaggctgccc gccaggaggc tgctggaggg tctgatcggt gctgtggagg ccctatgagc
     1621 caaggtcgcc ttcgcgcagt gtggcaaatc acaagtgaag ccattgatga gctgcatcga
     1681 tcacttgagt cacgtcctgg cgagacagct gtggcagagg atccagctgg gttgaagatc
     1741 cctttgctgc cgcaccagaa gcaggcatta gcctggctgc tatggcggga aggtcagaag
     1801 ccacgaggag gaatcctggc ggatgatatg gggttaggaa aaaccctgac aatgattgca
     1861 ctcatcctga cccagaagaa tcaagagaaa aacaaagaaa aggacaaaac cacggctttg
     1921 gcttggcttt ccacaaatga ctcctctgag ttcacttccc atggaacact agtcatctgt
     1981 cctgcttccc tgatccatca ttggaaaagt gaggtcgaga aacgtgtgag cagcaacaaa
     2041 ctaagagtct atctgtatca tgggccaaac cgggatcaac gtgcaaaagt cctctccaca
     2101 tatgacatcg tggtcactac ctacagcctt ctggccaagg agattcccac aaagaagcaa
     2161 gagggagaga tgccaggtgc aaacctcagt gtgaagggtg tctcatcacc tttgcttcga
     2221 gtagtctggg ctcgaatcat attggatgaa gctcacaatg ttaagaatcc ccgagtgcag
     2281 acttccttgg ctgtgtgtaa gctccaggcc caagcccgtt gggctgtcac tggaaccccc
     2341 attcagaaca acttgttgga catgtattca ctgctgaaat ttctccgttg ttctccattt
     2401 gatgaactca gtctgtggag gagtcaggtt gacaatggtt caaagaaagg agaagaacgg
     2461 ttaaatattt taaccaagag ccttttgctg aggagaacaa aagaccagct ggaccccacc
     2521 ggcaagccct tggtggtgct cccccagcgt aaatttcagt tgcaccattt aaagctttct
     2581 gaagatgaag aaaatgttta tagtgtcctt tttgcaagat caaggtcagc tctgcaatcc
     2641 tatctaaaaa gacatgaaag tgggggcggc caatctggaa gaagccctga taatccattc
     2701 agtagagtgg cccaggagtt tgggtccagt gggcctgggc tctccgtggc agcagactcg
     2761 cagacatcta gcaccgccca catactgtca cagttgctga gactccgcca gtgttgttgt
     2821 catctttctc tactgaagtc ggccctggat ctgaaagagc tgaagagtga aggcctggtc
     2881 ctttccctgg aagagcagct cagagacttg actttgtccg aattccacaa ctcagagccg
     2941 tctgcctcca tttcccttaa cggcaaatgc ttcaatgtgg agctttttga cgacaggaga
     3001 gagagcacca agatttcatc tctgttggca gaattggagg caatccgaag aaattcaggg
     3061 tcccaaaaga gtgtcatcgt ctctcagtgg accagcatgc tgaaggttgt aaccttgcac
     3121 cttaagaggc atggactgac ttattccacc atcgatggct ctgttaaccc caaacagaga
     3181 atggacttgg tggaggcatt taataaatcc aggggccctc aggttatgct aatctctctc
     3241 ttggctggag gtgttggtct aaacctgact ggaggaaacc atctttttct tctggacatg
     3301 cactggaatc cgtcactcga agatcaagct tgtgaccgaa tttaccgagt agggcagcag
     3361 aaagatgtag tcatacacag atttgtttgt gagggaacag tggaagagaa gatcttgcag
     3421 ctccaagaaa aaaagagaga tttggccaaa cagattctat caggaactgg agaagttgtc
     3481 accaagctca ccttggccga tctcaaagtc ctttttggca tctaacttcc tgtttatgga
     3541 gctcagaata gtgccattgt tggtttgtat taggatctgg ggagaatgac ctaaccctgg
     3601 tcctttgagc tctcgttggc attcagtttc accttcaagc cctcctcaaa gtgaggatca
     3661 gttaccatgt taaccacttg gttaaccagt catgttagtc aatcaacgta tttaatgtgt
     3721 gacacagaaa ccaataaatg acttcagata agagaaaatg ctttagagtt agagaatttg
     3781 gaaaacagcc ctgggagagt tgtacctaag cttcagtaaa agctcaaaaa gccctctgtt
     3841 gcttttctct tctcagctgg tggggaccca atgttactgc cttttctgac acaggctcca
     3901 tcccatctct tcatctcctg ccagtgaggc tgctcatata accatctctt tatgggctga
     3961 gcagaagcag gtctctgcgt aatatgtaga tggttagtat ttgtatcatc gtatcattta
     4021 gaatttggta tcatatcatt tagtattatt ttatattgct atcatatcat gtatttgcgt
     4081 cataaatttt aatttttgta tcatttttct agtatttgta tttttacaaa tttacagtat
     4141 ttgtagcact tagtatcatt gtttcattta gtattattgt gtcatttagt acttgtatta
     4201 tcattggcat aatccaataa acatgtgttt gacagtgta
//
LOCUS       XM_032612421            4206 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription termination factor 2
            (TTF2), transcript variant X3, mRNA.
ACCESSION   XM_032612421
VERSION     XM_032612421.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4206
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4206
                     /gene="TTF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743659"
     CDS             34..3492
                     /gene="TTF2"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X3"
                     /protein_id="XP_032468312.1"
                     /db_xref="GeneID:116743659"
                     /translation="MEVVGCPQHGTLCFLKTGVRDGPNKGKSFYVCRADTCSFVQATD
                     IPVSHCLLHEDFAVELQGLFLSQGKKEYRLFFRCVRSKAEGKQWCGNIPWQDLNSEEH
                     SVTSKSQHASEISRYPSSQQRNPFKLIDKSQEPSLRKQFIKGEDEEKTADKKQREKRD
                     PLLDQKKEQKPESKCWMEKDLSSGLVVKEKQSAVQETQRGEKTEFHSAAKEVEGVHKR
                     NLSETTSKQVRGNELREPSASQERSNGERHSLQKESEPPREKETQPLPRIVHSQHPIS
                     QSLKGGHLSKEHPKSWEARETKAKNDTSTQTLHKSLLQGHLQAQPETRGTPAPKGPAA
                     QPAPLAAGHPQGEMRDADTSSGDSEEDDVFVSSKPGSPLLFDLTLDSQKNLQFPGQSV
                     QRKISPDSGVSKKGESSDPEAQRVYLTTQLKQKKSTLASVNIQALPDKGQKLFKQLQE
                     LEDALSALALSPEQGTNEKSNTQVPQQSNFTKTTTDPPHLVPPKPLQGRDLQPLGCLG
                     LKAARQEAAGGSDRCCGGPMSQGRLRAVWQITSEAIDELHRSLESRPGETAVAEDPAG
                     LKIPLLPHQKQALAWLLWREGQKPRGGILADDMGLGKTLTMIALILTQKNQEKNKEKD
                     KTTALAWLSTNDSSEFTSHGTLVICPASLIHHWKSEVEKRVSSNKLRVYLYHGPNRDQ
                     RAKVLSTYDIVVTTYSLLAKEIPTKKQEGEMPGANLSVKGVSSPLLRVVWARIILDEA
                     HNVKNPRVQTSLAVCKLQAQARWAVTGTPIQNNLLDMYSLLNLWRSQVDNGSKKGEER
                     LNILTKSLLLRRTKDQLDPTGKPLVVLPQRKFQLHHLKLSEDEENVYSVLFARSRSAL
                     QSYLKRHESGGGQSGRSPDNPFSRVAQEFGSSGPGLSVAADSQTSSTAHILSQLLRLR
                     QCCCHLSLLKSALDLKELKSEGLVLSLEEQLRDLTLSEFHNSEPSASISLNGKCFNVE
                     LFDDRRESTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLKVVTLHLKRHGLTYSTID
                     GSVNPKQRMDLVEAFNKSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQA
                     CDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKRDLAKQILSGTGEVVTKLTLADL
                     KVLFGI"
     misc_feature    49..165
                     /gene="TTF2"
                     /note="GRF zinc finger; Region: zf-GRF; cl46396"
                     /db_xref="CDD:480736"
     misc_feature    <1627..3429
                     /gene="TTF2"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     Region: HepA; COG0553"
                     /db_xref="CDD:440319"
     misc_feature    1744..2463
                     /gene="TTF2"
                     /note="DEAH-box helicase domain of TTF2; Region:
                     DEXHc_TTF2; cd18072"
                     /db_xref="CDD:350830"
     misc_feature    order(1828..1848,2011..2013,2245..2250)
                     /gene="TTF2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350830"
ORIGIN      
        1 ggtggtttcg gggaagagga aagaagcagt gggatggaag tagttgggtg tccacagcac
       61 gggaccttat gttttctgaa gaccggcgtc cgagatggcc cgaataaagg aaagagcttc
      121 tacgtgtgcc gggcggacac atgcagcttc gtgcaggcca ccgacattcc tgtttctcat
      181 tgtttattgc atgaggactt tgcagtagag cttcagggtc tgtttctatc acagggcaag
      241 aaagaataca ggttattctt ccgatgtgtt agaagtaagg cagaggggaa gcaatggtgt
      301 ggaaatatcc catggcagga tcttaattcc gaagaacatt ctgtaaccag taagtctcag
      361 catgcctctg agatatctcg ttatccttcc agccagcaga gaaacccgtt caagttaatt
      421 gacaagagtc aagaaccatc cctccggaag cagttcatca aaggtgaaga tgaggaaaag
      481 acagctgata agaagcaaag ggaaaagaga gatccactcc tggatcaaaa gaaggaacag
      541 aagcctgaat ctaagtgctg gatggagaaa gatctctcat ctggcctggt ggtaaaggaa
      601 aaacaatcgg ctgttcaaga gacgcagcga ggggagaaga cagagtttca tagtgctgca
      661 aaggaggttg aaggggtgca caaaagaaac ctttctgaga cgacatccaa acaggtccgt
      721 gggaatgagc tgagagaacc atctgcatct caggagaggt caaatggtga gaggcattct
      781 ctccaaaaag aatcagaacc tccaagggaa aaggaaactc agcctttgcc tcgaattgtt
      841 cacagtcaac acccaataag ccagtccctg aaagggggac acctcagcaa ggagcacccc
      901 aagagctggg aggctagaga aacaaaggca aagaatgaca caagcacgca gaccctccat
      961 aaaagtctgc tccagggcca tttgcaggca cagccggaga cccggggcac gcccgctcca
     1021 aagggaccgg ctgctcagcc tgcaccgctg gccgcagggc acccccaggg agagatgcga
     1081 gacgccgata caagcagtgg tgacagtgag gaagatgatg tttttgtttc ctctaagcca
     1141 gggagcccct tgctctttga cttgactcta gactcacaga agaaccttca attccctggt
     1201 cagagtgtgc aaagaaaaat ttctcctgac tcaggcgttt ccaagaaggg agaatcttca
     1261 gacccagaag cccaacgtgt gtacctcaca acacagctga aacaaaagaa gagcacattg
     1321 gcatctgtga acatccaggc tcttccagac aagggtcaga agttgttcaa gcaacttcag
     1381 gagctggagg atgcgctgag tgccctggcc ctctccccag agcaaggcac taatgagaag
     1441 agtaacactc aagtaccaca gcagagtaac ttcaccaaaa cgaccactga tcctccccac
     1501 ttggtgcctc ccaaacccct gcagggccgg gatctccagc ctctgggttg tctaggactg
     1561 aaggctgccc gccaggaggc tgctggaggg tctgatcggt gctgtggagg ccctatgagc
     1621 caaggtcgcc ttcgcgcagt gtggcaaatc acaagtgaag ccattgatga gctgcatcga
     1681 tcacttgagt cacgtcctgg cgagacagct gtggcagagg atccagctgg gttgaagatc
     1741 cctttgctgc cgcaccagaa gcaggcatta gcctggctgc tatggcggga aggtcagaag
     1801 ccacgaggag gaatcctggc ggatgatatg gggttaggaa aaaccctgac aatgattgca
     1861 ctcatcctga cccagaagaa tcaagagaaa aacaaagaaa aggacaaaac cacggctttg
     1921 gcttggcttt ccacaaatga ctcctctgag ttcacttccc atggaacact agtcatctgt
     1981 cctgcttccc tgatccatca ttggaaaagt gaggtcgaga aacgtgtgag cagcaacaaa
     2041 ctaagagtct atctgtatca tgggccaaac cgggatcaac gtgcaaaagt cctctccaca
     2101 tatgacatcg tggtcactac ctacagcctt ctggccaagg agattcccac aaagaagcaa
     2161 gagggagaga tgccaggtgc aaacctcagt gtgaagggtg tctcatcacc tttgcttcga
     2221 gtagtctggg ctcgaatcat attggatgaa gctcacaatg ttaagaatcc ccgagtgcag
     2281 acttccttgg ctgtgtgtaa gctccaggcc caagcccgtt gggctgtcac tggaaccccc
     2341 attcagaaca acttgttgga catgtattca ctgctgaatc tgtggaggag tcaggttgac
     2401 aatggttcaa agaaaggaga agaacggtta aatattttaa ccaagagcct tttgctgagg
     2461 agaacaaaag accagctgga ccccaccggc aagcccttgg tggtgctccc ccagcgtaaa
     2521 tttcagttgc accatttaaa gctttctgaa gatgaagaaa atgtttatag tgtccttttt
     2581 gcaagatcaa ggtcagctct gcaatcctat ctaaaaagac atgaaagtgg gggcggccaa
     2641 tctggaagaa gccctgataa tccattcagt agagtggccc aggagtttgg gtccagtggg
     2701 cctgggctct ccgtggcagc agactcgcag acatctagca ccgcccacat actgtcacag
     2761 ttgctgagac tccgccagtg ttgttgtcat ctttctctac tgaagtcggc cctggatctg
     2821 aaagagctga agagtgaagg cctggtcctt tccctggaag agcagctcag agacttgact
     2881 ttgtccgaat tccacaactc agagccgtct gcctccattt cccttaacgg caaatgcttc
     2941 aatgtggagc tttttgacga caggagagag agcaccaaga tttcatctct gttggcagaa
     3001 ttggaggcaa tccgaagaaa ttcagggtcc caaaagagtg tcatcgtctc tcagtggacc
     3061 agcatgctga aggttgtaac cttgcacctt aagaggcatg gactgactta ttccaccatc
     3121 gatggctctg ttaaccccaa acagagaatg gacttggtgg aggcatttaa taaatccagg
     3181 ggccctcagg ttatgctaat ctctctcttg gctggaggtg ttggtctaaa cctgactgga
     3241 ggaaaccatc tttttcttct ggacatgcac tggaatccgt cactcgaaga tcaagcttgt
     3301 gaccgaattt accgagtagg gcagcagaaa gatgtagtca tacacagatt tgtttgtgag
     3361 ggaacagtgg aagagaagat cttgcagctc caagaaaaaa agagagattt ggccaaacag
     3421 attctatcag gaactggaga agttgtcacc aagctcacct tggccgatct caaagtcctt
     3481 tttggcatct aacttcctgt ttatggagct cagaatagtg ccattgttgg tttgtattag
     3541 gatctgggga gaatgaccta accctggtcc tttgagctct cgttggcatt cagtttcacc
     3601 ttcaagccct cctcaaagtg aggatcagtt accatgttaa ccacttggtt aaccagtcat
     3661 gttagtcaat caacgtattt aatgtgtgac acagaaacca ataaatgact tcagataaga
     3721 gaaaatgctt tagagttaga gaatttggaa aacagccctg ggagagttgt acctaagctt
     3781 cagtaaaagc tcaaaaagcc ctctgttgct tttctcttct cagctggtgg ggacccaatg
     3841 ttactgcctt ttctgacaca ggctccatcc catctcttca tctcctgcca gtgaggctgc
     3901 tcatataacc atctctttat gggctgagca gaagcaggtc tctgcgtaat atgtagatgg
     3961 ttagtatttg tatcatcgta tcatttagaa tttggtatca tatcatttag tattatttta
     4021 tattgctatc atatcatgta tttgcgtcat aaattttaat ttttgtatca tttttctagt
     4081 atttgtattt ttacaaattt acagtatttg tagcacttag tatcattgtt tcatttagta
     4141 ttattgtgtc atttagtact tgtattatca ttggcataat ccaataaaca tgtgtttgac
     4201 agtgta
//
LOCUS       XM_032612428            4152 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription termination factor 2
            (TTF2), transcript variant X4, mRNA.
ACCESSION   XM_032612428
VERSION     XM_032612428.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4152
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4152
                     /gene="TTF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743659"
     CDS             34..3438
                     /gene="TTF2"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X4"
                     /protein_id="XP_032468319.1"
                     /db_xref="GeneID:116743659"
                     /translation="MEVVGCPQHGTLCFLKTGVRDGPNKGKSFYVCRADTCSFVQATE
                     LFFRCVRSKAEGKQWCGNIPWQDLNSEEHSVTSKSQHASEISRYPSSQQRNPFKLIDK
                     SQEPSLRKQFIKGEDEEKTADKKQREKRDPLLDQKKEQKPESKCWMEKDLSSGLVVKE
                     KQSAVQETQRGEKTEFHSAAKEVEGVHKRNLSETTSKQVRGNELREPSASQERSNGER
                     HSLQKESEPPREKETQPLPRIVHSQHPISQSLKGGHLSKEHPKSWEARETKAKNDTST
                     QTLHKSLLQGHLQAQPETRGTPAPKGPAAQPAPLAAGHPQGEMRDADTSSGDSEEDDV
                     FVSSKPGSPLLFDLTLDSQKNLQFPGQSVQRKISPDSGVSKKGESSDPEAQRVYLTTQ
                     LKQKKSTLASVNIQALPDKGQKLFKQLQELEDALSALALSPEQGTNEKSNTQVPQQSN
                     FTKTTTDPPHLVPPKPLQGRDLQPLGCLGLKAARQEAAGGSDRCCGGPMSQGRLRAVW
                     QITSEAIDELHRSLESRPGETAVAEDPAGLKIPLLPHQKQALAWLLWREGQKPRGGIL
                     ADDMGLGKTLTMIALILTQKNQEKNKEKDKTTALAWLSTNDSSEFTSHGTLVICPASL
                     IHHWKSEVEKRVSSNKLRVYLYHGPNRDQRAKVLSTYDIVVTTYSLLAKEIPTKKQEG
                     EMPGANLSVKGVSSPLLRVVWARIILDEAHNVKNPRVQTSLAVCKLQAQARWAVTGTP
                     IQNNLLDMYSLLKFLRCSPFDELSLWRSQVDNGSKKGEERLNILTKSLLLRRTKDQLD
                     PTGKPLVVLPQRKFQLHHLKLSEDEENVYSVLFARSRSALQSYLKRHESGGGQSGRSP
                     DNPFSRVAQEFGSSGPGLSVAADSQTSSTAHILSQLLRLRQCCCHLSLLKSALDLKEL
                     KSEGLVLSLEEQLRDLTLSEFHNSEPSASISLNGKCFNVELFDDRRESTKISSLLAEL
                     EAIRRNSGSQKSVIVSQWTSMLKVVTLHLKRHGLTYSTIDGSVNPKQRMDLVEAFNKS
                     RGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRF
                     VCEGTVEEKILQLQEKKRDLAKQILSGTGEVVTKLTLADLKVLFGI"
     misc_feature    49..156
                     /gene="TTF2"
                     /note="GRF zinc finger; Region: zf-GRF; cl46396"
                     /db_xref="CDD:480736"
     misc_feature    <1540..3375
                     /gene="TTF2"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     Region: HepA; COG0553"
                     /db_xref="CDD:440319"
     misc_feature    1657..2409
                     /gene="TTF2"
                     /note="DEAH-box helicase domain of TTF2; Region:
                     DEXHc_TTF2; cd18072"
                     /db_xref="CDD:350830"
     misc_feature    order(1741..1761,1924..1926,2158..2163)
                     /gene="TTF2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350830"
ORIGIN      
        1 ggtggtttcg gggaagagga aagaagcagt gggatggaag tagttgggtg tccacagcac
       61 gggaccttat gttttctgaa gaccggcgtc cgagatggcc cgaataaagg aaagagcttc
      121 tacgtgtgcc gggcggacac atgcagcttc gtgcaggcca ccgagttatt cttccgatgt
      181 gttagaagta aggcagaggg gaagcaatgg tgtggaaata tcccatggca ggatcttaat
      241 tccgaagaac attctgtaac cagtaagtct cagcatgcct ctgagatatc tcgttatcct
      301 tccagccagc agagaaaccc gttcaagtta attgacaaga gtcaagaacc atccctccgg
      361 aagcagttca tcaaaggtga agatgaggaa aagacagctg ataagaagca aagggaaaag
      421 agagatccac tcctggatca aaagaaggaa cagaagcctg aatctaagtg ctggatggag
      481 aaagatctct catctggcct ggtggtaaag gaaaaacaat cggctgttca agagacgcag
      541 cgaggggaga agacagagtt tcatagtgct gcaaaggagg ttgaaggggt gcacaaaaga
      601 aacctttctg agacgacatc caaacaggtc cgtgggaatg agctgagaga accatctgca
      661 tctcaggaga ggtcaaatgg tgagaggcat tctctccaaa aagaatcaga acctccaagg
      721 gaaaaggaaa ctcagccttt gcctcgaatt gttcacagtc aacacccaat aagccagtcc
      781 ctgaaagggg gacacctcag caaggagcac cccaagagct gggaggctag agaaacaaag
      841 gcaaagaatg acacaagcac gcagaccctc cataaaagtc tgctccaggg ccatttgcag
      901 gcacagccgg agacccgggg cacgcccgct ccaaagggac cggctgctca gcctgcaccg
      961 ctggccgcag ggcaccccca gggagagatg cgagacgccg atacaagcag tggtgacagt
     1021 gaggaagatg atgtttttgt ttcctctaag ccagggagcc ccttgctctt tgacttgact
     1081 ctagactcac agaagaacct tcaattccct ggtcagagtg tgcaaagaaa aatttctcct
     1141 gactcaggcg tttccaagaa gggagaatct tcagacccag aagcccaacg tgtgtacctc
     1201 acaacacagc tgaaacaaaa gaagagcaca ttggcatctg tgaacatcca ggctcttcca
     1261 gacaagggtc agaagttgtt caagcaactt caggagctgg aggatgcgct gagtgccctg
     1321 gccctctccc cagagcaagg cactaatgag aagagtaaca ctcaagtacc acagcagagt
     1381 aacttcacca aaacgaccac tgatcctccc cacttggtgc ctcccaaacc cctgcagggc
     1441 cgggatctcc agcctctggg ttgtctagga ctgaaggctg cccgccagga ggctgctgga
     1501 gggtctgatc ggtgctgtgg aggccctatg agccaaggtc gccttcgcgc agtgtggcaa
     1561 atcacaagtg aagccattga tgagctgcat cgatcacttg agtcacgtcc tggcgagaca
     1621 gctgtggcag aggatccagc tgggttgaag atccctttgc tgccgcacca gaagcaggca
     1681 ttagcctggc tgctatggcg ggaaggtcag aagccacgag gaggaatcct ggcggatgat
     1741 atggggttag gaaaaaccct gacaatgatt gcactcatcc tgacccagaa gaatcaagag
     1801 aaaaacaaag aaaaggacaa aaccacggct ttggcttggc tttccacaaa tgactcctct
     1861 gagttcactt cccatggaac actagtcatc tgtcctgctt ccctgatcca tcattggaaa
     1921 agtgaggtcg agaaacgtgt gagcagcaac aaactaagag tctatctgta tcatgggcca
     1981 aaccgggatc aacgtgcaaa agtcctctcc acatatgaca tcgtggtcac tacctacagc
     2041 cttctggcca aggagattcc cacaaagaag caagagggag agatgccagg tgcaaacctc
     2101 agtgtgaagg gtgtctcatc acctttgctt cgagtagtct gggctcgaat catattggat
     2161 gaagctcaca atgttaagaa tccccgagtg cagacttcct tggctgtgtg taagctccag
     2221 gcccaagccc gttgggctgt cactggaacc cccattcaga acaacttgtt ggacatgtat
     2281 tcactgctga aatttctccg ttgttctcca tttgatgaac tcagtctgtg gaggagtcag
     2341 gttgacaatg gttcaaagaa aggagaagaa cggttaaata ttttaaccaa gagccttttg
     2401 ctgaggagaa caaaagacca gctggacccc accggcaagc ccttggtggt gctcccccag
     2461 cgtaaatttc agttgcacca tttaaagctt tctgaagatg aagaaaatgt ttatagtgtc
     2521 ctttttgcaa gatcaaggtc agctctgcaa tcctatctaa aaagacatga aagtgggggc
     2581 ggccaatctg gaagaagccc tgataatcca ttcagtagag tggcccagga gtttgggtcc
     2641 agtgggcctg ggctctccgt ggcagcagac tcgcagacat ctagcaccgc ccacatactg
     2701 tcacagttgc tgagactccg ccagtgttgt tgtcatcttt ctctactgaa gtcggccctg
     2761 gatctgaaag agctgaagag tgaaggcctg gtcctttccc tggaagagca gctcagagac
     2821 ttgactttgt ccgaattcca caactcagag ccgtctgcct ccatttccct taacggcaaa
     2881 tgcttcaatg tggagctttt tgacgacagg agagagagca ccaagatttc atctctgttg
     2941 gcagaattgg aggcaatccg aagaaattca gggtcccaaa agagtgtcat cgtctctcag
     3001 tggaccagca tgctgaaggt tgtaaccttg caccttaaga ggcatggact gacttattcc
     3061 accatcgatg gctctgttaa ccccaaacag agaatggact tggtggaggc atttaataaa
     3121 tccaggggcc ctcaggttat gctaatctct ctcttggctg gaggtgttgg tctaaacctg
     3181 actggaggaa accatctttt tcttctggac atgcactgga atccgtcact cgaagatcaa
     3241 gcttgtgacc gaatttaccg agtagggcag cagaaagatg tagtcataca cagatttgtt
     3301 tgtgagggaa cagtggaaga gaagatcttg cagctccaag aaaaaaagag agatttggcc
     3361 aaacagattc tatcaggaac tggagaagtt gtcaccaagc tcaccttggc cgatctcaaa
     3421 gtcctttttg gcatctaact tcctgtttat ggagctcaga atagtgccat tgttggtttg
     3481 tattaggatc tggggagaat gacctaaccc tggtcctttg agctctcgtt ggcattcagt
     3541 ttcaccttca agccctcctc aaagtgagga tcagttacca tgttaaccac ttggttaacc
     3601 agtcatgtta gtcaatcaac gtatttaatg tgtgacacag aaaccaataa atgacttcag
     3661 ataagagaaa atgctttaga gttagagaat ttggaaaaca gccctgggag agttgtacct
     3721 aagcttcagt aaaagctcaa aaagccctct gttgcttttc tcttctcagc tggtggggac
     3781 ccaatgttac tgccttttct gacacaggct ccatcccatc tcttcatctc ctgccagtga
     3841 ggctgctcat ataaccatct ctttatgggc tgagcagaag caggtctctg cgtaatatgt
     3901 agatggttag tatttgtatc atcgtatcat ttagaatttg gtatcatatc atttagtatt
     3961 attttatatt gctatcatat catgtatttg cgtcataaat tttaattttt gtatcatttt
     4021 tctagtattt gtatttttac aaatttacag tatttgtagc acttagtatc attgtttcat
     4081 ttagtattat tgtgtcattt agtacttgta ttatcattgg cataatccaa taaacatgtg
     4141 tttgacagtg ta
//
LOCUS       XM_032612436            4125 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription termination factor 2
            (TTF2), transcript variant X5, mRNA.
ACCESSION   XM_032612436
VERSION     XM_032612436.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4125
                     /gene="TTF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743659"
     CDS             34..3411
                     /gene="TTF2"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X5"
                     /protein_id="XP_032468327.1"
                     /db_xref="GeneID:116743659"
                     /translation="MEVVGCPQHGTLCFLKTGVRDGPNKGKSFYVCRADTCSFVQATD
                     IPVSHCLLHEDFAVELQGLFLSQGKKEYRLFFRCVRSKAEGKQWCGNIPWQDLNSEEH
                     SVTSKSQHASEISRYPSSQQRNPFKLIDKSQEPSLRKQFIKGEDEEKTADKKQREKRD
                     PLLDQKKEQKPESKCWMEKDLSSGLVVKEKQSAVQETQRGEKTEFHSAAKEVEGVHKR
                     NLSETTSKQVRGNELREPSASQERSNGERHSLQKESEPPREKETQPLPRIVHSQHPIS
                     QSLKGGHLSKEHPKSWEARETKAKNDTSTQTLHKSLLQGHLQAQPETRGTPAPKGPAA
                     QPAPLAAGHPQGEMRDADTSSGDSEEDDVFVSSKPGSPLLFDLTLDSQKNLQFPGQSV
                     QRKISPDSGVSKKGESSDPEAQRVYLTTQLKQKKSTLASVNIQALPDKGQKLFKQLQE
                     LEDALSALALSPEQAGTNEKSNTQVPQQSNFTKTTTDPPHLVPPKPLQGRDLQPLGCL
                     GLKAARQEAAGGSDRCCGGPMSQGRLRAVWQITSEAIDELHRSLESRPGETAVAEDPA
                     GLKIPLLPHQKQALAWLLWREGQKPRGGILADDMGLGKTLTMIALILTQKNQEKNKEK
                     DKTTALAWLSTNDSSEFTSHGTLVICPASLIHHWKSEVEKRVSSNKLRVYLYHGPNRD
                     QRAKVLSTYDIVVTTYSLLAKEIPTKKQEGEMPGANLSVKGVSSPLLRVVWARIILDE
                     AHNVKNPRVQTSLAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDELSLWRS
                     QVDNGSKKGEERLNILTKSLLLRRTKDQLDPTGKPLVVLPQRKFQLHHLKLSEDEENV
                     YSVLFARSRSALQSYLKRHESGGGQSGRSPDNPFSRVAQEFGSSGPGLSVAADSQTSS
                     TAHILSQLLRLRQCCCHLSLLKSALDLKELKSEGLVLSLEEQLRDLTLSEFHNSEPSA
                     SISLNGKCFNVELFDDRRESTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLKVMLIS
                     LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEK
                     ILQLQEKKRDLAKQILSGTGEVVTKLTLADLKVLFGI"
     misc_feature    49..165
                     /gene="TTF2"
                     /note="GRF zinc finger; Region: zf-GRF; cl46396"
                     /db_xref="CDD:480736"
     misc_feature    <1630..3348
                     /gene="TTF2"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     Region: HepA; COG0553"
                     /db_xref="CDD:440319"
     misc_feature    1747..2499
                     /gene="TTF2"
                     /note="DEAH-box helicase domain of TTF2; Region:
                     DEXHc_TTF2; cd18072"
                     /db_xref="CDD:350830"
     misc_feature    order(1831..1851,2014..2016,2248..2253)
                     /gene="TTF2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350830"
ORIGIN      
        1 ggtggtttcg gggaagagga aagaagcagt gggatggaag tagttgggtg tccacagcac
       61 gggaccttat gttttctgaa gaccggcgtc cgagatggcc cgaataaagg aaagagcttc
      121 tacgtgtgcc gggcggacac atgcagcttc gtgcaggcca ccgacattcc tgtttctcat
      181 tgtttattgc atgaggactt tgcagtagag cttcagggtc tgtttctatc acagggcaag
      241 aaagaataca ggttattctt ccgatgtgtt agaagtaagg cagaggggaa gcaatggtgt
      301 ggaaatatcc catggcagga tcttaattcc gaagaacatt ctgtaaccag taagtctcag
      361 catgcctctg agatatctcg ttatccttcc agccagcaga gaaacccgtt caagttaatt
      421 gacaagagtc aagaaccatc cctccggaag cagttcatca aaggtgaaga tgaggaaaag
      481 acagctgata agaagcaaag ggaaaagaga gatccactcc tggatcaaaa gaaggaacag
      541 aagcctgaat ctaagtgctg gatggagaaa gatctctcat ctggcctggt ggtaaaggaa
      601 aaacaatcgg ctgttcaaga gacgcagcga ggggagaaga cagagtttca tagtgctgca
      661 aaggaggttg aaggggtgca caaaagaaac ctttctgaga cgacatccaa acaggtccgt
      721 gggaatgagc tgagagaacc atctgcatct caggagaggt caaatggtga gaggcattct
      781 ctccaaaaag aatcagaacc tccaagggaa aaggaaactc agcctttgcc tcgaattgtt
      841 cacagtcaac acccaataag ccagtccctg aaagggggac acctcagcaa ggagcacccc
      901 aagagctggg aggctagaga aacaaaggca aagaatgaca caagcacgca gaccctccat
      961 aaaagtctgc tccagggcca tttgcaggca cagccggaga cccggggcac gcccgctcca
     1021 aagggaccgg ctgctcagcc tgcaccgctg gccgcagggc acccccaggg agagatgcga
     1081 gacgccgata caagcagtgg tgacagtgag gaagatgatg tttttgtttc ctctaagcca
     1141 gggagcccct tgctctttga cttgactcta gactcacaga agaaccttca attccctggt
     1201 cagagtgtgc aaagaaaaat ttctcctgac tcaggcgttt ccaagaaggg agaatcttca
     1261 gacccagaag cccaacgtgt gtacctcaca acacagctga aacaaaagaa gagcacattg
     1321 gcatctgtga acatccaggc tcttccagac aagggtcaga agttgttcaa gcaacttcag
     1381 gagctggagg atgcgctgag tgccctggcc ctctccccag agcaagcagg cactaatgag
     1441 aagagtaaca ctcaagtacc acagcagagt aacttcacca aaacgaccac tgatcctccc
     1501 cacttggtgc ctcccaaacc cctgcagggc cgggatctcc agcctctggg ttgtctagga
     1561 ctgaaggctg cccgccagga ggctgctgga gggtctgatc ggtgctgtgg aggccctatg
     1621 agccaaggtc gccttcgcgc agtgtggcaa atcacaagtg aagccattga tgagctgcat
     1681 cgatcacttg agtcacgtcc tggcgagaca gctgtggcag aggatccagc tgggttgaag
     1741 atccctttgc tgccgcacca gaagcaggca ttagcctggc tgctatggcg ggaaggtcag
     1801 aagccacgag gaggaatcct ggcggatgat atggggttag gaaaaaccct gacaatgatt
     1861 gcactcatcc tgacccagaa gaatcaagag aaaaacaaag aaaaggacaa aaccacggct
     1921 ttggcttggc tttccacaaa tgactcctct gagttcactt cccatggaac actagtcatc
     1981 tgtcctgctt ccctgatcca tcattggaaa agtgaggtcg agaaacgtgt gagcagcaac
     2041 aaactaagag tctatctgta tcatgggcca aaccgggatc aacgtgcaaa agtcctctcc
     2101 acatatgaca tcgtggtcac tacctacagc cttctggcca aggagattcc cacaaagaag
     2161 caagagggag agatgccagg tgcaaacctc agtgtgaagg gtgtctcatc acctttgctt
     2221 cgagtagtct gggctcgaat catattggat gaagctcaca atgttaagaa tccccgagtg
     2281 cagacttcct tggctgtgtg taagctccag gcccaagccc gttgggctgt cactggaacc
     2341 cccattcaga acaacttgtt ggacatgtat tcactgctga aatttctccg ttgttctcca
     2401 tttgatgaac tcagtctgtg gaggagtcag gttgacaatg gttcaaagaa aggagaagaa
     2461 cggttaaata ttttaaccaa gagccttttg ctgaggagaa caaaagacca gctggacccc
     2521 accggcaagc ccttggtggt gctcccccag cgtaaatttc agttgcacca tttaaagctt
     2581 tctgaagatg aagaaaatgt ttatagtgtc ctttttgcaa gatcaaggtc agctctgcaa
     2641 tcctatctaa aaagacatga aagtgggggc ggccaatctg gaagaagccc tgataatcca
     2701 ttcagtagag tggcccagga gtttgggtcc agtgggcctg ggctctccgt ggcagcagac
     2761 tcgcagacat ctagcaccgc ccacatactg tcacagttgc tgagactccg ccagtgttgt
     2821 tgtcatcttt ctctactgaa gtcggccctg gatctgaaag agctgaagag tgaaggcctg
     2881 gtcctttccc tggaagagca gctcagagac ttgactttgt ccgaattcca caactcagag
     2941 ccgtctgcct ccatttccct taacggcaaa tgcttcaatg tggagctttt tgacgacagg
     3001 agagagagca ccaagatttc atctctgttg gcagaattgg aggcaatccg aagaaattca
     3061 gggtcccaaa agagtgtcat cgtctctcag tggaccagca tgctgaaggt tatgctaatc
     3121 tctctcttgg ctggaggtgt tggtctaaac ctgactggag gaaaccatct ttttcttctg
     3181 gacatgcact ggaatccgtc actcgaagat caagcttgtg accgaattta ccgagtaggg
     3241 cagcagaaag atgtagtcat acacagattt gtttgtgagg gaacagtgga agagaagatc
     3301 ttgcagctcc aagaaaaaaa gagagatttg gccaaacaga ttctatcagg aactggagaa
     3361 gttgtcacca agctcacctt ggccgatctc aaagtccttt ttggcatcta acttcctgtt
     3421 tatggagctc agaatagtgc cattgttggt ttgtattagg atctggggag aatgacctaa
     3481 ccctggtcct ttgagctctc gttggcattc agtttcacct tcaagccctc ctcaaagtga
     3541 ggatcagtta ccatgttaac cacttggtta accagtcatg ttagtcaatc aacgtattta
     3601 atgtgtgaca cagaaaccaa taaatgactt cagataagag aaaatgcttt agagttagag
     3661 aatttggaaa acagccctgg gagagttgta cctaagcttc agtaaaagct caaaaagccc
     3721 tctgttgctt ttctcttctc agctggtggg gacccaatgt tactgccttt tctgacacag
     3781 gctccatccc atctcttcat ctcctgccag tgaggctgct catataacca tctctttatg
     3841 ggctgagcag aagcaggtct ctgcgtaata tgtagatggt tagtatttgt atcatcgtat
     3901 catttagaat ttggtatcat atcatttagt attattttat attgctatca tatcatgtat
     3961 ttgcgtcata aattttaatt tttgtatcat ttttctagta tttgtatttt tacaaattta
     4021 cagtatttgt agcacttagt atcattgttt catttagtat tattgtgtca tttagtactt
     4081 gtattatcat tggcataatc caataaacat gtgtttgaca gtgta
//
LOCUS       XM_032612444            4122 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription termination factor 2
            (TTF2), transcript variant X6, mRNA.
ACCESSION   XM_032612444
VERSION     XM_032612444.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4122
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4122
                     /gene="TTF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743659"
     CDS             34..3408
                     /gene="TTF2"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X6"
                     /protein_id="XP_032468335.1"
                     /db_xref="GeneID:116743659"
                     /translation="MEVVGCPQHGTLCFLKTGVRDGPNKGKSFYVCRADTCSFVQATD
                     IPVSHCLLHEDFAVELQGLFLSQGKKEYRLFFRCVRSKAEGKQWCGNIPWQDLNSEEH
                     SVTSKSQHASEISRYPSSQQRNPFKLIDKSQEPSLRKQFIKGEDEEKTADKKQREKRD
                     PLLDQKKEQKPESKCWMEKDLSSGLVVKEKQSAVQETQRGEKTEFHSAAKEVEGVHKR
                     NLSETTSKQVRGNELREPSASQERSNGERHSLQKESEPPREKETQPLPRIVHSQHPIS
                     QSLKGGHLSKEHPKSWEARETKAKNDTSTQTLHKSLLQGHLQAQPETRGTPAPKGPAA
                     QPAPLAAGHPQGEMRDADTSSGDSEEDDVFVSSKPGSPLLFDLTLDSQKNLQFPGQSV
                     QRKISPDSGVSKKGESSDPEAQRVYLTTQLKQKKSTLASVNIQALPDKGQKLFKQLQE
                     LEDALSALALSPEQGTNEKSNTQVPQQSNFTKTTTDPPHLVPPKPLQGRDLQPLGCLG
                     LKAARQEAAGGSDRCCGGPMSQGRLRAVWQITSEAIDELHRSLESRPGETAVAEDPAG
                     LKIPLLPHQKQALAWLLWREGQKPRGGILADDMGLGKTLTMIALILTQKNQEKNKEKD
                     KTTALAWLSTNDSSEFTSHGTLVICPASLIHHWKSEVEKRVSSNKLRVYLYHGPNRDQ
                     RAKVLSTYDIVVTTYSLLAKEIPTKKQEGEMPGANLSVKGVSSPLLRVVWARIILDEA
                     HNVKNPRVQTSLAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDELSLWRSQ
                     VDNGSKKGEERLNILTKSLLLRRTKDQLDPTGKPLVVLPQRKFQLHHLKLSEDEENVY
                     SVLFARSRSALQSYLKRHESGGGQSGRSPDNPFSRVAQEFGSSGPGLSVAADSQTSST
                     AHILSQLLRLRQCCCHLSLLKSALDLKELKSEGLVLSLEEQLRDLTLSEFHNSEPSAS
                     ISLNGKCFNVELFDDRRESTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLKVMLISL
                     LAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKI
                     LQLQEKKRDLAKQILSGTGEVVTKLTLADLKVLFGI"
     misc_feature    49..165
                     /gene="TTF2"
                     /note="GRF zinc finger; Region: zf-GRF; cl46396"
                     /db_xref="CDD:480736"
     misc_feature    <1627..3345
                     /gene="TTF2"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     Region: HepA; COG0553"
                     /db_xref="CDD:440319"
     misc_feature    1744..2496
                     /gene="TTF2"
                     /note="DEAH-box helicase domain of TTF2; Region:
                     DEXHc_TTF2; cd18072"
                     /db_xref="CDD:350830"
     misc_feature    order(1828..1848,2011..2013,2245..2250)
                     /gene="TTF2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350830"
ORIGIN      
        1 ggtggtttcg gggaagagga aagaagcagt gggatggaag tagttgggtg tccacagcac
       61 gggaccttat gttttctgaa gaccggcgtc cgagatggcc cgaataaagg aaagagcttc
      121 tacgtgtgcc gggcggacac atgcagcttc gtgcaggcca ccgacattcc tgtttctcat
      181 tgtttattgc atgaggactt tgcagtagag cttcagggtc tgtttctatc acagggcaag
      241 aaagaataca ggttattctt ccgatgtgtt agaagtaagg cagaggggaa gcaatggtgt
      301 ggaaatatcc catggcagga tcttaattcc gaagaacatt ctgtaaccag taagtctcag
      361 catgcctctg agatatctcg ttatccttcc agccagcaga gaaacccgtt caagttaatt
      421 gacaagagtc aagaaccatc cctccggaag cagttcatca aaggtgaaga tgaggaaaag
      481 acagctgata agaagcaaag ggaaaagaga gatccactcc tggatcaaaa gaaggaacag
      541 aagcctgaat ctaagtgctg gatggagaaa gatctctcat ctggcctggt ggtaaaggaa
      601 aaacaatcgg ctgttcaaga gacgcagcga ggggagaaga cagagtttca tagtgctgca
      661 aaggaggttg aaggggtgca caaaagaaac ctttctgaga cgacatccaa acaggtccgt
      721 gggaatgagc tgagagaacc atctgcatct caggagaggt caaatggtga gaggcattct
      781 ctccaaaaag aatcagaacc tccaagggaa aaggaaactc agcctttgcc tcgaattgtt
      841 cacagtcaac acccaataag ccagtccctg aaagggggac acctcagcaa ggagcacccc
      901 aagagctggg aggctagaga aacaaaggca aagaatgaca caagcacgca gaccctccat
      961 aaaagtctgc tccagggcca tttgcaggca cagccggaga cccggggcac gcccgctcca
     1021 aagggaccgg ctgctcagcc tgcaccgctg gccgcagggc acccccaggg agagatgcga
     1081 gacgccgata caagcagtgg tgacagtgag gaagatgatg tttttgtttc ctctaagcca
     1141 gggagcccct tgctctttga cttgactcta gactcacaga agaaccttca attccctggt
     1201 cagagtgtgc aaagaaaaat ttctcctgac tcaggcgttt ccaagaaggg agaatcttca
     1261 gacccagaag cccaacgtgt gtacctcaca acacagctga aacaaaagaa gagcacattg
     1321 gcatctgtga acatccaggc tcttccagac aagggtcaga agttgttcaa gcaacttcag
     1381 gagctggagg atgcgctgag tgccctggcc ctctccccag agcaaggcac taatgagaag
     1441 agtaacactc aagtaccaca gcagagtaac ttcaccaaaa cgaccactga tcctccccac
     1501 ttggtgcctc ccaaacccct gcagggccgg gatctccagc ctctgggttg tctaggactg
     1561 aaggctgccc gccaggaggc tgctggaggg tctgatcggt gctgtggagg ccctatgagc
     1621 caaggtcgcc ttcgcgcagt gtggcaaatc acaagtgaag ccattgatga gctgcatcga
     1681 tcacttgagt cacgtcctgg cgagacagct gtggcagagg atccagctgg gttgaagatc
     1741 cctttgctgc cgcaccagaa gcaggcatta gcctggctgc tatggcggga aggtcagaag
     1801 ccacgaggag gaatcctggc ggatgatatg gggttaggaa aaaccctgac aatgattgca
     1861 ctcatcctga cccagaagaa tcaagagaaa aacaaagaaa aggacaaaac cacggctttg
     1921 gcttggcttt ccacaaatga ctcctctgag ttcacttccc atggaacact agtcatctgt
     1981 cctgcttccc tgatccatca ttggaaaagt gaggtcgaga aacgtgtgag cagcaacaaa
     2041 ctaagagtct atctgtatca tgggccaaac cgggatcaac gtgcaaaagt cctctccaca
     2101 tatgacatcg tggtcactac ctacagcctt ctggccaagg agattcccac aaagaagcaa
     2161 gagggagaga tgccaggtgc aaacctcagt gtgaagggtg tctcatcacc tttgcttcga
     2221 gtagtctggg ctcgaatcat attggatgaa gctcacaatg ttaagaatcc ccgagtgcag
     2281 acttccttgg ctgtgtgtaa gctccaggcc caagcccgtt gggctgtcac tggaaccccc
     2341 attcagaaca acttgttgga catgtattca ctgctgaaat ttctccgttg ttctccattt
     2401 gatgaactca gtctgtggag gagtcaggtt gacaatggtt caaagaaagg agaagaacgg
     2461 ttaaatattt taaccaagag ccttttgctg aggagaacaa aagaccagct ggaccccacc
     2521 ggcaagccct tggtggtgct cccccagcgt aaatttcagt tgcaccattt aaagctttct
     2581 gaagatgaag aaaatgttta tagtgtcctt tttgcaagat caaggtcagc tctgcaatcc
     2641 tatctaaaaa gacatgaaag tgggggcggc caatctggaa gaagccctga taatccattc
     2701 agtagagtgg cccaggagtt tgggtccagt gggcctgggc tctccgtggc agcagactcg
     2761 cagacatcta gcaccgccca catactgtca cagttgctga gactccgcca gtgttgttgt
     2821 catctttctc tactgaagtc ggccctggat ctgaaagagc tgaagagtga aggcctggtc
     2881 ctttccctgg aagagcagct cagagacttg actttgtccg aattccacaa ctcagagccg
     2941 tctgcctcca tttcccttaa cggcaaatgc ttcaatgtgg agctttttga cgacaggaga
     3001 gagagcacca agatttcatc tctgttggca gaattggagg caatccgaag aaattcaggg
     3061 tcccaaaaga gtgtcatcgt ctctcagtgg accagcatgc tgaaggttat gctaatctct
     3121 ctcttggctg gaggtgttgg tctaaacctg actggaggaa accatctttt tcttctggac
     3181 atgcactgga atccgtcact cgaagatcaa gcttgtgacc gaatttaccg agtagggcag
     3241 cagaaagatg tagtcataca cagatttgtt tgtgagggaa cagtggaaga gaagatcttg
     3301 cagctccaag aaaaaaagag agatttggcc aaacagattc tatcaggaac tggagaagtt
     3361 gtcaccaagc tcaccttggc cgatctcaaa gtcctttttg gcatctaact tcctgtttat
     3421 ggagctcaga atagtgccat tgttggtttg tattaggatc tggggagaat gacctaaccc
     3481 tggtcctttg agctctcgtt ggcattcagt ttcaccttca agccctcctc aaagtgagga
     3541 tcagttacca tgttaaccac ttggttaacc agtcatgtta gtcaatcaac gtatttaatg
     3601 tgtgacacag aaaccaataa atgacttcag ataagagaaa atgctttaga gttagagaat
     3661 ttggaaaaca gccctgggag agttgtacct aagcttcagt aaaagctcaa aaagccctct
     3721 gttgcttttc tcttctcagc tggtggggac ccaatgttac tgccttttct gacacaggct
     3781 ccatcccatc tcttcatctc ctgccagtga ggctgctcat ataaccatct ctttatgggc
     3841 tgagcagaag caggtctctg cgtaatatgt agatggttag tatttgtatc atcgtatcat
     3901 ttagaatttg gtatcatatc atttagtatt attttatatt gctatcatat catgtatttg
     3961 cgtcataaat tttaattttt gtatcatttt tctagtattt gtatttttac aaatttacag
     4021 tatttgtagc acttagtatc attgtttcat ttagtattat tgtgtcattt agtacttgta
     4081 ttatcattgg cataatccaa taaacatgtg tttgacagtg ta
//
LOCUS       XM_032612452            4102 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription termination factor 2
            (TTF2), transcript variant X7, mRNA.
ACCESSION   XM_032612452
VERSION     XM_032612452.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4102
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4102
                     /gene="TTF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743659"
     CDS             425..3388
                     /gene="TTF2"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X7"
                     /protein_id="XP_032468343.1"
                     /db_xref="GeneID:116743659"
                     /translation="MEKDLSSGLVVKEKQSAVQETQRGEKTEFHSAAKEVEGVHKRNL
                     SETTSKQVRGNELREPSASQERSNGERHSLQKESEPPREKETQPLPRIVHSQHPISQS
                     LKGGHLSKEHPKSWEARETKAKNDTSTQTLHKSLLQGHLQAQPETRGTPAPKGPAAQP
                     APLAAGHPQGEMRDADTSSGDSEEDDVFVSSKPGSPLLFDLTLDSQKNLQFPGQSVQR
                     KISPDSGVSKKGESSDPEAQRVYLTTQLKQKKSTLASVNIQALPDKGQKLFKQLQELE
                     DALSALALSPEQGTNEKSNTQVPQQSNFTKTTTDPPHLVPPKPLQGRDLQPLGCLGLK
                     AARQEAAGGSDRCCGGPMSQGRLRAVWQITSEAIDELHRSLESRPGETAVAEDPAGLK
                     IPLLPHQKQALAWLLWREGQKPRGGILADDMGLGKTLTMIALILTQKNQEKNKEKDKT
                     TALAWLSTNDSSEFTSHGTLVICPASLIHHWKSEVEKRVSSNKLRVYLYHGPNRDQRA
                     KVLSTYDIVVTTYSLLAKEIPTKKQEGEMPGANLSVKGVSSPLLRVVWARIILDEAHN
                     VKNPRVQTSLAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDELSLWRSQVD
                     NGSKKGEERLNILTKSLLLRRTKDQLDPTGKPLVVLPQRKFQLHHLKLSEDEENVYSV
                     LFARSRSALQSYLKRHESGGGQSGRSPDNPFSRVAQEFGSSGPGLSVAADSQTSSTAH
                     ILSQLLRLRQCCCHLSLLKSALDLKELKSEGLVLSLEEQLRDLTLSEFHNSEPSASIS
                     LNGKCFNVELFDDRRESTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLKVVTLHLKR
                     HGLTYSTIDGSVNPKQRMDLVEAFNKSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMH
                     WNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKRDLAKQILSGTGEV
                     VTKLTLADLKVLFGI"
     misc_feature    <1490..3325
                     /gene="TTF2"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     Region: HepA; COG0553"
                     /db_xref="CDD:440319"
     misc_feature    1607..2359
                     /gene="TTF2"
                     /note="DEAH-box helicase domain of TTF2; Region:
                     DEXHc_TTF2; cd18072"
                     /db_xref="CDD:350830"
     misc_feature    order(1691..1711,1874..1876,2108..2113)
                     /gene="TTF2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350830"
ORIGIN      
        1 aaagaagcag tgggatggaa gtagttgggt gtccacagca cgggacctta tgttttctga
       61 agaccggcgt ccgagatggc ccgaataaag gaaagagctt ctacgtgtgc cgggcggaca
      121 catgcagctt cgtgcaggcc accgacattc ctgtttctca ttgtttattg catgaggact
      181 ttgcagtaga gcttcagggt ctgtttctat cacagggcaa gaaagaatac aggttattct
      241 tccgatgtgt tagaaccagc agagaaaccc gttcaagtta attgacaaga gtcaagaacc
      301 atccctccgg aagcagttca tcaaaggtga agatgaggaa aagacagctg ataagaagca
      361 aagggaaaag agagatccac tcctggatca aaagaaggaa cagaagcctg aatctaagtg
      421 ctggatggag aaagatctct catctggcct ggtggtaaag gaaaaacaat cggctgttca
      481 agagacgcag cgaggggaga agacagagtt tcatagtgct gcaaaggagg ttgaaggggt
      541 gcacaaaaga aacctttctg agacgacatc caaacaggtc cgtgggaatg agctgagaga
      601 accatctgca tctcaggaga ggtcaaatgg tgagaggcat tctctccaaa aagaatcaga
      661 acctccaagg gaaaaggaaa ctcagccttt gcctcgaatt gttcacagtc aacacccaat
      721 aagccagtcc ctgaaagggg gacacctcag caaggagcac cccaagagct gggaggctag
      781 agaaacaaag gcaaagaatg acacaagcac gcagaccctc cataaaagtc tgctccaggg
      841 ccatttgcag gcacagccgg agacccgggg cacgcccgct ccaaagggac cggctgctca
      901 gcctgcaccg ctggccgcag ggcaccccca gggagagatg cgagacgccg atacaagcag
      961 tggtgacagt gaggaagatg atgtttttgt ttcctctaag ccagggagcc ccttgctctt
     1021 tgacttgact ctagactcac agaagaacct tcaattccct ggtcagagtg tgcaaagaaa
     1081 aatttctcct gactcaggcg tttccaagaa gggagaatct tcagacccag aagcccaacg
     1141 tgtgtacctc acaacacagc tgaaacaaaa gaagagcaca ttggcatctg tgaacatcca
     1201 ggctcttcca gacaagggtc agaagttgtt caagcaactt caggagctgg aggatgcgct
     1261 gagtgccctg gccctctccc cagagcaagg cactaatgag aagagtaaca ctcaagtacc
     1321 acagcagagt aacttcacca aaacgaccac tgatcctccc cacttggtgc ctcccaaacc
     1381 cctgcagggc cgggatctcc agcctctggg ttgtctagga ctgaaggctg cccgccagga
     1441 ggctgctgga gggtctgatc ggtgctgtgg aggccctatg agccaaggtc gccttcgcgc
     1501 agtgtggcaa atcacaagtg aagccattga tgagctgcat cgatcacttg agtcacgtcc
     1561 tggcgagaca gctgtggcag aggatccagc tgggttgaag atccctttgc tgccgcacca
     1621 gaagcaggca ttagcctggc tgctatggcg ggaaggtcag aagccacgag gaggaatcct
     1681 ggcggatgat atggggttag gaaaaaccct gacaatgatt gcactcatcc tgacccagaa
     1741 gaatcaagag aaaaacaaag aaaaggacaa aaccacggct ttggcttggc tttccacaaa
     1801 tgactcctct gagttcactt cccatggaac actagtcatc tgtcctgctt ccctgatcca
     1861 tcattggaaa agtgaggtcg agaaacgtgt gagcagcaac aaactaagag tctatctgta
     1921 tcatgggcca aaccgggatc aacgtgcaaa agtcctctcc acatatgaca tcgtggtcac
     1981 tacctacagc cttctggcca aggagattcc cacaaagaag caagagggag agatgccagg
     2041 tgcaaacctc agtgtgaagg gtgtctcatc acctttgctt cgagtagtct gggctcgaat
     2101 catattggat gaagctcaca atgttaagaa tccccgagtg cagacttcct tggctgtgtg
     2161 taagctccag gcccaagccc gttgggctgt cactggaacc cccattcaga acaacttgtt
     2221 ggacatgtat tcactgctga aatttctccg ttgttctcca tttgatgaac tcagtctgtg
     2281 gaggagtcag gttgacaatg gttcaaagaa aggagaagaa cggttaaata ttttaaccaa
     2341 gagccttttg ctgaggagaa caaaagacca gctggacccc accggcaagc ccttggtggt
     2401 gctcccccag cgtaaatttc agttgcacca tttaaagctt tctgaagatg aagaaaatgt
     2461 ttatagtgtc ctttttgcaa gatcaaggtc agctctgcaa tcctatctaa aaagacatga
     2521 aagtgggggc ggccaatctg gaagaagccc tgataatcca ttcagtagag tggcccagga
     2581 gtttgggtcc agtgggcctg ggctctccgt ggcagcagac tcgcagacat ctagcaccgc
     2641 ccacatactg tcacagttgc tgagactccg ccagtgttgt tgtcatcttt ctctactgaa
     2701 gtcggccctg gatctgaaag agctgaagag tgaaggcctg gtcctttccc tggaagagca
     2761 gctcagagac ttgactttgt ccgaattcca caactcagag ccgtctgcct ccatttccct
     2821 taacggcaaa tgcttcaatg tggagctttt tgacgacagg agagagagca ccaagatttc
     2881 atctctgttg gcagaattgg aggcaatccg aagaaattca gggtcccaaa agagtgtcat
     2941 cgtctctcag tggaccagca tgctgaaggt tgtaaccttg caccttaaga ggcatggact
     3001 gacttattcc accatcgatg gctctgttaa ccccaaacag agaatggact tggtggaggc
     3061 atttaataaa tccaggggcc ctcaggttat gctaatctct ctcttggctg gaggtgttgg
     3121 tctaaacctg actggaggaa accatctttt tcttctggac atgcactgga atccgtcact
     3181 cgaagatcaa gcttgtgacc gaatttaccg agtagggcag cagaaagatg tagtcataca
     3241 cagatttgtt tgtgagggaa cagtggaaga gaagatcttg cagctccaag aaaaaaagag
     3301 agatttggcc aaacagattc tatcaggaac tggagaagtt gtcaccaagc tcaccttggc
     3361 cgatctcaaa gtcctttttg gcatctaact tcctgtttat ggagctcaga atagtgccat
     3421 tgttggtttg tattaggatc tggggagaat gacctaaccc tggtcctttg agctctcgtt
     3481 ggcattcagt ttcaccttca agccctcctc aaagtgagga tcagttacca tgttaaccac
     3541 ttggttaacc agtcatgtta gtcaatcaac gtatttaatg tgtgacacag aaaccaataa
     3601 atgacttcag ataagagaaa atgctttaga gttagagaat ttggaaaaca gccctgggag
     3661 agttgtacct aagcttcagt aaaagctcaa aaagccctct gttgcttttc tcttctcagc
     3721 tggtggggac ccaatgttac tgccttttct gacacaggct ccatcccatc tcttcatctc
     3781 ctgccagtga ggctgctcat ataaccatct ctttatgggc tgagcagaag caggtctctg
     3841 cgtaatatgt agatggttag tatttgtatc atcgtatcat ttagaatttg gtatcatatc
     3901 atttagtatt attttatatt gctatcatat catgtatttg cgtcataaat tttaattttt
     3961 gtatcatttt tctagtattt gtatttttac aaatttacag tatttgtagc acttagtatc
     4021 attgtttcat ttagtattat tgtgtcattt agtacttgta ttatcattgg cataatccaa
     4081 taaacatgtg tttgacagtg ta
//
LOCUS       XM_032612466            2468 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif containing 45 (TRIM45),
            transcript variant X1, mRNA.
ACCESSION   XM_032612466
VERSION     XM_032612466.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2468
                     /gene="TRIM45"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 long SRA reads, 8
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743682"
     CDS             609..2351
                     /gene="TRIM45"
                     /codon_start=1
                     /product="tripartite motif-containing protein 45 isoform
                     X1"
                     /protein_id="XP_032468357.1"
                     /db_xref="GeneID:116743682"
                     /translation="MAEKRKPLLGFVGKLPSGTTPGNSGKTRCPLCMGLFKAPRLLPC
                     LHTVCTTCLEQLEPFSVVDIRGGDSDTSSEGSVFQELKPRTLQPQIGILCPVCDAQVD
                     LPMGGVKALTVDHLAMNDVMLESLRGAGQGLVCDLCSDREVEKRCQTCKANLCHFCCQ
                     AHRRQKKTTYHTMVDLKDLKGYSQIGKPILCPAHPAEELRLFCELCDQPVCRECMVGG
                     HREHPCDLASNVVHKHGDSVRELLKGTQPHVEALEKALAQIKGTNRALQERVEAVAAD
                     VRGFSEGYIKAIEEHRDKLLKQLEAIRIQKENSLQLQKAQLEQLLADMRTGVEFTEHL
                     LTSGSDLEILITKGVVMERLTKLNKVAYSARPGVNEKITFSPKEKAGLCRGYEVYGAI
                     NTKEVDPAKCVLQGEDLHRAREKQTASFTVVCKDAAGESMGRGGENIQVAVVPKDKKD
                     SPVKTMVHDNKDGTYYVSYSPKEPGIYTVFVCVKEQHVQGSPFTVTVRKRHRSHPGVF
                     HCCTFCSSRGQKTARCACGGTMPGGYLGCGHGHKGHPGRPHWSCCGKFTEKSECAWAG
                     GQSAARSVLRTVAL"
     misc_feature    687..908
                     /gene="TRIM45"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 45 (TRIM45) and similar proteins;
                     Region: RING-HC_TRIM45_C-VII; cd16588"
                     /db_xref="CDD:438250"
     misc_feature    1005..1136
                     /gene="TRIM45"
                     /note="B-box-type 1 zinc finger found in tripartite
                     motif-containing protein 45 (TRIM45) and similar proteins;
                     Region: Bbox1_TRIM45_C-X; cd19809"
                     /db_xref="CDD:380867"
     misc_feature    1170..1298
                     /gene="TRIM45"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 45 (TRIM45) and similar proteins;
                     Region: Bbox2_TRIM45_C-X; cd19785"
                     /db_xref="CDD:380843"
     misc_feature    1308..1670
                     /gene="TRIM45"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; Region: CC_brat-like;
                     cl29238"
                     /db_xref="CDD:475168"
     misc_feature    order(1320..1322,1329..1334,1338..1346,1353..1355,
                     1362..1364,1404..1409,1416..1418,1425..1430,1437..1442,
                     1449..1451,1470..1475,1482..1484,1491..1496,1503..1508,
                     1515..1517,1545..1550,1557..1559,1569..1571,1578..1583,
                     1590..1595,1599..1604,1626..1628,1635..1640,1647..1649,
                     1656..1661)
                     /gene="TRIM45"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467844"
     misc_feature    1803..2099
                     /gene="TRIM45"
                     /note="Filamin-type immunoglobulin domains; Region:
                     IG_FLMN; smart00557"
                     /db_xref="CDD:214720"
ORIGIN      
        1 attgggctcg cctgaggagc cccgggctgg gattggtgcg aggaggggcc agggtcgtcg
       61 ggcaacttgg acctaagggt ggggaggcgg tggcaaccga ggagccggtg gggtctcgta
      121 ggtccctcgt ccgccgcgtg ccttccgcgg agggcccagt cgagggaagg agtgggaggc
      181 gcccctacct catcacgcgg gggcgggggt ggcacttgtc gtgtgtcggg cgcgggacta
      241 gtggggcggg cggtgggagg gggctggtag tggagggtga tggaggtgca ggggttctcg
      301 acagcaggac tagctggaga cctaaatctg taagcgcttc cggggaggag gacttgggga
      361 gacagaggag ggcgtgggcg tgtctggtac gggatgcctt gcaaaggagg gggccttgct
      421 gagatctgtg ggtggttcct ttgaggaatc cttttcttcc tttttgccct ttgatttgcc
      481 aaagggagag tccccgtggc ctccgttcaa gttttggaaa ctttcacttt gggtgggcct
      541 aatcacatac tacttcatta tagaagtgcc cagagccttt tctgatactg agcacaaacg
      601 tagggaatat ggcagaaaaa aggaagccgc tgctgggctt cgtgggcaaa ctccccagtg
      661 gaaccacacc tggaaactca ggcaagactc gctgcccttt gtgcatgggg cttttcaaag
      721 cccccaggct cttgccttgt ttgcacacag tttgcaccac ctgtctggag cagctggaac
      781 ccttctcagt agtggacatc cgagggggag actctgacac aagctctgag gggtcagtat
      841 tccaggaact caagccacgc actctgcagc cgcaaattgg catcctctgt ccggtatgtg
      901 atgctcaggt ggacctgccc atgggtggag tgaaggcttt aaccgtagac cacctggcca
      961 tgaatgatgt gatgctggag agtctgcgtg gggcaggcca gggcctggtg tgtgacctgt
     1021 gcagcgacag ggaagtggag aagaggtgtc agacctgcaa agccaatctc tgccacttct
     1081 gctgccaggc tcataggcgg cagaagaaga cgacttacca caccatggtg gacctgaaag
     1141 acttgaaagg ctacagccag attgggaaac ccattctgtg tcccgctcac cctgcggagg
     1201 agctgaggct gttctgtgag ctctgcgacc agcccgtgtg cagggaatgc atggtggggg
     1261 ggcaccggga gcacccctgc gacctcgcca gcaacgttgt ccacaagcac ggggactccg
     1321 tgcgggagct cctcaaaggc acccagcccc acgtggaggc cctggagaag gcgctggcac
     1381 agatcaaagg gaccaaccgc gccctgcagg aacgggtgga ggccgtggcc gccgacgtcc
     1441 gcggcttctc cgagggctac atcaaggcca tcgaggagca tcgggacaag ctgctgaagc
     1501 agctggaagc catccggatc cagaaggaga actccctgca gctgcagaag gcacagctgg
     1561 agcagctgct ggcagacatg cggaccggag tggagttcac cgagcacttg ctgaccagtg
     1621 gctccgacct ggagatcctc atcaccaaag gggtggtcat ggaacggctc acaaagttga
     1681 acaaagtggc atacagtgcc cgtcctggag tgaacgagaa gatcaccttc tctcctaagg
     1741 agaaagcggg cctgtgccgt ggctatgaag tttatggggc catcaatacc aaagaggtcg
     1801 atccagccaa atgtgtcctt caaggggaag atctccacag agcccgcgag aaacagaccg
     1861 cctctttcac cgtcgtttgt aaggatgcag caggagagag catgggcagg ggaggagaga
     1921 acattcaagt cgcagtagtc cctaaagata agaaagacag tccagtcaaa acgatggtcc
     1981 acgataacaa ggatgggaca tactacgttt cctactcccc caaggaacct ggcatctata
     2041 ctgtgttcgt ctgtgtcaag gaacaacacg tgcagggctc accattcact gtgaccgtga
     2101 ggaaacggca ccgctcacac ccaggcgtgt ttcactgctg cacgttctgc tccagcagag
     2161 gccagaagac tgctcgctgc gcatgtggag gcaccatgcc gggtgggtac ctaggctgtg
     2221 gccacggaca caaaggccac ccggggcgcc cccactggtc gtgctgtggg aagtttaccg
     2281 agaagtcaga atgcgcatgg gcaggtgggc agagcgcagc gaggagtgta ctgaggacgg
     2341 tggccctctg atggcttcct gggtctgtgg tcatagctgc ggccagcacg gcttcagatc
     2401 accagagaac ccctgacctt aattctgaag aaactgatgg aattaaaaac aaagtgcctt
     2461 atgttata
//
LOCUS       XM_032612469            1766 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif containing 45 (TRIM45),
            transcript variant X2, mRNA.
ACCESSION   XM_032612469
VERSION     XM_032612469.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1766
                     /gene="TRIM45"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743682"
     CDS             219..1649
                     /gene="TRIM45"
                     /codon_start=1
                     /product="tripartite motif-containing protein 45 isoform
                     X2"
                     /protein_id="XP_032468360.1"
                     /db_xref="GeneID:116743682"
                     /translation="MGGVKALTVDHLAMNDVMLESLRGAGQGLVCDLCSDREVEKRCQ
                     TCKANLCHFCCQAHRRQKKTTYHTMVDLKDLKGYSQIGKPILCPAHPAEELRLFCELC
                     DQPVCRECMVGGHREHPCDLASNVVHKHGDSVRELLKGTQPHVEALEKALAQIKGTNR
                     ALQERVEAVAADVRGFSEGYIKAIEEHRDKLLKQLEAIRIQKENSLQLQKAQLEQLLA
                     DMRTGVEFTEHLLTSGSDLEILITKGVVMERLTKLNKVAYSARPGVNEKITFSPKEKA
                     GLCRGYEVYGAINTKEVDPAKCVLQGEDLHRAREKQTASFTVVCKDAAGESMGRGGEN
                     IQVAVVPKDKKDSPVKTMVHDNKDGTYYVSYSPKEPGIYTVFVCVKEQHVQGSPFTVT
                     VRKRHRSHPGVFHCCTFCSSRGQKTARCACGGTMPGGYLGCGHGHKGHPGRPHWSCCG
                     KFTEKSECAWAGGQSAARSVLRTVAL"
     misc_feature    303..434
                     /gene="TRIM45"
                     /note="B-box-type 1 zinc finger found in tripartite
                     motif-containing protein 45 (TRIM45) and similar proteins;
                     Region: Bbox1_TRIM45_C-X; cd19809"
                     /db_xref="CDD:380867"
     misc_feature    468..596
                     /gene="TRIM45"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 45 (TRIM45) and similar proteins;
                     Region: Bbox2_TRIM45_C-X; cd19785"
                     /db_xref="CDD:380843"
     misc_feature    606..968
                     /gene="TRIM45"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; Region: CC_brat-like;
                     cl29238"
                     /db_xref="CDD:475168"
     misc_feature    order(618..620,627..632,636..644,651..653,660..662,
                     702..707,714..716,723..728,735..740,747..749,768..773,
                     780..782,789..794,801..806,813..815,843..848,855..857,
                     867..869,876..881,888..893,897..902,924..926,933..938,
                     945..947,954..959)
                     /gene="TRIM45"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467844"
     misc_feature    1101..1397
                     /gene="TRIM45"
                     /note="Filamin-type immunoglobulin domains; Region:
                     IG_FLMN; smart00557"
                     /db_xref="CDD:214720"
ORIGIN      
        1 ggaggtgcag gggttctcga cagcaggact agctggagac ctaaatcttt tgcaccacct
       61 gtctggagca gctggaaccc ttctcagtag tggacatccg agggggagac tctgacacaa
      121 gctctgaggg gtcagtattc caggaactca agccacgcac tctgcagccg caaattggca
      181 tcctctgtcc ggtatgtgat gctcaggtgg acctgcccat gggtggagtg aaggctttaa
      241 ccgtagacca cctggccatg aatgatgtga tgctggagag tctgcgtggg gcaggccagg
      301 gcctggtgtg tgacctgtgc agcgacaggg aagtggagaa gaggtgtcag acctgcaaag
      361 ccaatctctg ccacttctgc tgccaggctc ataggcggca gaagaagacg acttaccaca
      421 ccatggtgga cctgaaagac ttgaaaggct acagccagat tgggaaaccc attctgtgtc
      481 ccgctcaccc tgcggaggag ctgaggctgt tctgtgagct ctgcgaccag cccgtgtgca
      541 gggaatgcat ggtggggggg caccgggagc acccctgcga cctcgccagc aacgttgtcc
      601 acaagcacgg ggactccgtg cgggagctcc tcaaaggcac ccagccccac gtggaggccc
      661 tggagaaggc gctggcacag atcaaaggga ccaaccgcgc cctgcaggaa cgggtggagg
      721 ccgtggccgc cgacgtccgc ggcttctccg agggctacat caaggccatc gaggagcatc
      781 gggacaagct gctgaagcag ctggaagcca tccggatcca gaaggagaac tccctgcagc
      841 tgcagaaggc acagctggag cagctgctgg cagacatgcg gaccggagtg gagttcaccg
      901 agcacttgct gaccagtggc tccgacctgg agatcctcat caccaaaggg gtggtcatgg
      961 aacggctcac aaagttgaac aaagtggcat acagtgcccg tcctggagtg aacgagaaga
     1021 tcaccttctc tcctaaggag aaagcgggcc tgtgccgtgg ctatgaagtt tatggggcca
     1081 tcaataccaa agaggtcgat ccagccaaat gtgtccttca aggggaagat ctccacagag
     1141 cccgcgagaa acagaccgcc tctttcaccg tcgtttgtaa ggatgcagca ggagagagca
     1201 tgggcagggg aggagagaac attcaagtcg cagtagtccc taaagataag aaagacagtc
     1261 cagtcaaaac gatggtccac gataacaagg atgggacata ctacgtttcc tactccccca
     1321 aggaacctgg catctatact gtgttcgtct gtgtcaagga acaacacgtg cagggctcac
     1381 cattcactgt gaccgtgagg aaacggcacc gctcacaccc aggcgtgttt cactgctgca
     1441 cgttctgctc cagcagaggc cagaagactg ctcgctgcgc atgtggaggc accatgccgg
     1501 gtgggtacct aggctgtggc cacggacaca aaggccaccc ggggcgcccc cactggtcgt
     1561 gctgtgggaa gtttaccgag aagtcagaat gcgcatgggc aggtgggcag agcgcagcga
     1621 ggagtgtact gaggacggtg gccctctgat ggcttcctgg gtctgtggtc atagctgcgg
     1681 ccagcacggc ttcagatcac cagagaaccc ctgaccttaa ttctgaagaa actgatggaa
     1741 ttaaaaacaa agtgccttat gttata
//
LOCUS       XR_004346854             496 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743689
            (LOC116743689), ncRNA.
ACCESSION   XR_004346854
VERSION     XR_004346854.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..496
                     /gene="LOC116743689"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116743689"
     ncRNA           1..496
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743689"
                     /product="uncharacterized LOC116743689"
                     /db_xref="GeneID:116743689"
ORIGIN      
        1 gagttcctgg ttcccgagcc ctcggtcccc gcgactggcg tttttccttc ggcgcggctg
       61 agagcctgcg agttcccctc tgggcctccc agcttatttt agttaaggag tcctcgaggc
      121 ctagcgtgct ggttaccaga gcttctagaa gcggcttgcc ggctcctggc attttccggg
      181 ccagactggc tctgaggacg cgtcagggag accgttggac ccaggtctag cgttgccttc
      241 gttcggccag cgcccgggag ctcgactcca gattccctgg ggctggagaa gccgttgttt
      301 cgtccgtcgg ggccagaggt gcagatgact aaggggttgt ttttcgtcca gaattctaca
      361 gtttgttgtc cttacgagga gtctcctgat ttggccttat gggggatttg ctacacctgg
      421 gatctaggac ctgtatctct agaattacag aaacggtcac cacagagcat cgagtagagt
      481 tccgtgtgct atacag
//
LOCUS       XM_032612490            1044 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCAS2 pre-mRNA processing factor (BCAS2),
            mRNA.
ACCESSION   XM_032612490
VERSION     XM_032612490.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1044
                     /gene="BCAS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 mRNAs, 3 long SRA reads, 10
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743693"
     CDS             180..857
                     /gene="BCAS2"
                     /codon_start=1
                     /product="pre-mRNA-splicing factor SPF27"
                     /protein_id="XP_032468381.1"
                     /db_xref="GeneID:116743693"
                     /translation="MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYR
                     PTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITA
                     WQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHI
                     QDLNWQRKNMQLTAGSKLREMESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANK
                     ENIRQDF"
     misc_feature    210..818
                     /gene="BCAS2"
                     /note="Breast carcinoma amplified sequence 2 (BCAS2);
                     Region: BCAS2; pfam05700"
                     /db_xref="CDD:428593"
ORIGIN      
        1 gacgtcaatt ccgaccagaa caaaatggcc gggcaatttc tagcgagcgc gccatcagaa
       61 ttaacttagc aggcgccaaa gctgatgcgc aggcgacgtc attacgttag cgtaggccgc
      121 aggagtattt aagtgaacct gagccagcgc agagtcggaa aacttcggcg aacctaagaa
      181 tggcgggtac gggtttggtg gccggagagg ttgtggtgga tgcgctgccg tattttgacc
      241 aaggttatga agcgcctggt gtgcgggaag cggctgcggc attggtggag gaagaaacac
      301 gcagataccg acctaccaag aactacctga gctacctgac agccccggat tattccgctt
      361 ttgaaaccga cataatgaga aatgaatttg aaagattggc tgctcgacaa ccaattgaat
      421 tgctcagtat gaaacgatat gaacttccag ccccttcctc gggtcagaaa aatgacatta
      481 ctgcgtggca agaatgcgta aacaattcta tggcccagtt agagcatcaa gcggttcgaa
      541 ttgagaatct ggaactaatg tcacagcatg gatgcaatgc ctggaaagtg tataatgaaa
      601 atctagttca tatgattgaa catgcacaga aagagctcca gaagttaagg aaacatattc
      661 aagacttaaa ctggcagcga aagaacatgc aactcacagc tggatctaaa ttaagagaaa
      721 tggagtcaac ttgggtatcc ctggtcagta agaattatga gattgaaaga actattgtac
      781 aattagaaaa tgaactcttt caaatgaagc agcaacatgg agaggcaaac aaagaaaaca
      841 tacggcaaga tttctgaaaa agactaatct ggtgggtaga aaggaaggca tgttgggctt
      901 tcacagaaga tcagacatct gaactgtgaa aaacaacagc atcttacggt aatcatcagt
      961 ggttaaatgt ttagaaagca tagaatgtgg actgttatat tctgtttgta catttcagca
     1021 aaataaaaaa tttcaacatg gtga
//
LOCUS       XM_032612503            1067 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus stathmin 1 (STMN1), transcript variant
            X1, mRNA.
ACCESSION   XM_032612503
VERSION     XM_032612503.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1067
                     /gene="STMN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 mRNAs, 2 long SRA reads, 26
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743696"
     CDS             163..612
                     /gene="STMN1"
                     /codon_start=1
                     /product="stathmin"
                     /protein_id="XP_032468394.1"
                     /db_xref="GeneID:116743696"
                     /translation="MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKD
                     LSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLT
                     HKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD"
     misc_feature    175..579
                     /gene="STMN1"
                     /note="Stathmin family; Region: Stathmin; pfam00836"
                     /db_xref="CDD:459956"
ORIGIN      
        1 tgcggagccc tgcggggagg tcacgtgccg ctgtttggcg cttttgtgcg cgcccgggtc
       61 tgtgggtgct cagagtgtgg ccaggcggct cggaccgagc agggttttcc ttgctagtgg
      121 attgtgtaga atacaccgcc agtctcttgt cttctgttca ccatggcttc ttctgatatc
      181 caggtgaagg aactggagaa gcgtgcctca ggccaggctt ttgagctgat tctcagccct
      241 cgatcaaaag aatctgtccc agaattcccc ctttcccctc caaagaagaa ggatctttcc
      301 ctggaggaaa ttcagaagaa actagaagct gcagaagaaa gacgcaagtc ccatgaagct
      361 gaggtcttga agcaacttgc tgagaaacga gagcatgaga aggaagtgct tcaaaaagca
      421 atagaggaga acaacaactt cagtaaaatg gcagaagaga agctgaccca caaaatggaa
      481 gccaacaaag agaaccgaga ggcgcaaatg gctgccaaac tggagcgttt gcgagagaag
      541 gacaagcaca ttgaagaagt gcggaagaac aaagaatcca aagatcctgc tgatgagact
      601 gaagctgact aatttgttct gagaactgac tttctccccc tccccttcct aaatatccaa
      661 agactgtact ggccagtgtc attttatttt tgccctcctg acaaatattc tagaagctga
      721 tgtaggactg tataggtaga tccagactgt atgatgttgt tttaggggct aaaggggaga
      781 aactaaaagt gttttactct ttttctaaag tgttgaagtc tttctaatgt agctattttt
      841 cttgttgcat cttttctact tcagtacact tggtgtgctg ggttaatggc tagtactgta
      901 ttggctctgt gaaaacatgt ttgtgaaaag agtatgtagt ggcttctttc aaactgttag
      961 atgctgaata tctgttcact tttaaatccc aattctgtcc cgatcttaac agatgctact
     1021 gtacttgaat ggttaataaa actgcacagt gctgttggtg gcagtga
//
LOCUS       XM_032612512            1615 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus stathmin 1 (STMN1), transcript variant
            X2, mRNA.
ACCESSION   XM_032612512
VERSION     XM_032612512.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1615
                     /gene="STMN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 26
                     Proteins, and 86% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116743696"
     CDS             711..1160
                     /gene="STMN1"
                     /codon_start=1
                     /product="stathmin"
                     /protein_id="XP_032468403.1"
                     /db_xref="GeneID:116743696"
                     /translation="MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKD
                     LSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLT
                     HKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD"
     misc_feature    723..1127
                     /gene="STMN1"
                     /note="Stathmin family; Region: Stathmin; pfam00836"
                     /db_xref="CDD:459956"
ORIGIN      
        1 cctgccttgc ggaggaaaaa ggaaatctgg ccaccagctc ctggggagaa acaccccacg
       61 ccaggactgg ctcttaagag ggctggggtc cgggacctca cccagcttca ccggatgcct
      121 ctcggaggag cccaagcaga gtttagtcgt cgccctccct ggaggtccct ttcgcggagc
      181 tgacaccctg atcggaggct ggggagagag aagtgccggc ccagccttcc attgctccct
      241 caaagcgaac ggcagacggc cgctgcccgt gcttcggtgg gcgcggctgg gaggtcccgg
      301 tgaaatctcc tctgtgccgt tctctgcggc tctcgccccc ttccagcccc ttggccgccg
      361 gctgcaggcc ccgccagagg cagcccaccc tctccgaggt gctgcaagtg gcagggaggt
      421 gacgccaggg cttggtgctg gatgctgcgg tccggcttgg cgagcctctg cccggattca
      481 gggcggccac tgtgggctcc acaagcccgg cgaggcttgg ccgccccctc ctcccagagg
      541 agctgctgcc ctgaaaaaac aggctgctgg agacgccatt tctggtccca ccctgtgtcg
      601 gccgtggaag agccaatcac catccttgtg tgcagctctg aaaactgcag ggttttcctt
      661 gctagtggat tgtgtagaat acaccgccag tctcttgtct tctgttcacc atggcttctt
      721 ctgatatcca ggtgaaggaa ctggagaagc gtgcctcagg ccaggctttt gagctgattc
      781 tcagccctcg atcaaaagaa tctgtcccag aattccccct ttcccctcca aagaagaagg
      841 atctttccct ggaggaaatt cagaagaaac tagaagctgc agaagaaaga cgcaagtccc
      901 atgaagctga ggtcttgaag caacttgctg agaaacgaga gcatgagaag gaagtgcttc
      961 aaaaagcaat agaggagaac aacaacttca gtaaaatggc agaagagaag ctgacccaca
     1021 aaatggaagc caacaaagag aaccgagagg cgcaaatggc tgccaaactg gagcgtttgc
     1081 gagagaagga caagcacatt gaagaagtgc ggaagaacaa agaatccaaa gatcctgctg
     1141 atgagactga agctgactaa tttgttctga gaactgactt tctccccctc cccttcctaa
     1201 atatccaaag actgtactgg ccagtgtcat tttatttttg ccctcctgac aaatattcta
     1261 gaagctgatg taggactgta taggtagatc cagactgtat gatgttgttt taggggctaa
     1321 aggggagaaa ctaaaagtgt tttactcttt ttctaaagtg ttgaagtctt tctaatgtag
     1381 ctatttttct tgttgcatct tttctacttc agtacacttg gtgtgctggg ttaatggcta
     1441 gtactgtatt ggctctgtga aaacatgttt gtgaaaagag tatgtagtgg cttctttcaa
     1501 actgttagat gctgaatatc tgttcacttt taaatcccaa ttctgtcccg atcttaacag
     1561 atgctactgt acttgaatgg ttaataaaac tgcacagtgc tgttggtggc agtga
//
LOCUS       XM_032612527            2523 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus alkaline phosphatase, biomineralization
            associated (ALPL), mRNA.
ACCESSION   XM_032612527
VERSION     XM_032612527.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2523
                     /gene="ALPL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 44 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743704"
     CDS             203..1777
                     /gene="ALPL"
                     /codon_start=1
                     /product="alkaline phosphatase, tissue-nonspecific
                     isozyme"
                     /protein_id="XP_032468418.1"
                     /db_xref="GeneID:116743704"
                     /translation="MISPFLVLAIGTCLTNSLVPEKEKDPKYWRDQAQQTLKNALRLQ
                     TLNTNVAKNVIMFLGDGMGVSTVTAARILKGQLHHSPGEETRLEMDKFPYVALSKTYN
                     TNAQVPDSAGTATAYLCGVKANEGTVGVSAATQRTECNTTQGNEVTSILRWAKDAGKS
                     VGIVTTTRVNHATPSAAYAHSADRDWYSDNEMPPEALSQGCKDIAYQLMHNVRDIEVI
                     MGGGRKYMFPKNRTDVEYEMDEKARGTRLDGLNLIDIWKSFKPKHKHSHYIWNRTELL
                     ALDPYTVDYLLGLFEPGDMQYELNRNNVTDPSLSEMVEMAIRILSKNPKGFFLLVEGG
                     RIDHGHHEGKAKQALHEVVEMDRAIGQAGTMTSVEDTLTVVTADHSHVFTFGGYTPRG
                     NSIFGLAPMVSDTDKKPFTAILYGNGPGYKVVGGERENVSMVDYAHNNYQAQSAVPLR
                     HETHGGEDVAVFAKGPMAHLLHGVHEQNYIPHVMAYAACIGANHDHCASASLSGSPSP
                     GPLLFLLALLPLAILF"
     misc_feature    353..1672
                     /gene="ALPL"
                     /note="Alkaline phosphatase; Region: Alk_phosphatase;
                     pfam00245"
                     /db_xref="CDD:395188"
     misc_feature    order(380..382,527..532,719..721,752..754,1196..1198,
                     1211..1213,1223..1225,1334..1339,1562..1564)
                     /gene="ALPL"
                     /note="active site"
                     /db_xref="CDD:293736"
     misc_feature    order(380..382,527..532,752..754,1211..1213,1223..1225,
                     1337..1339,1562..1564)
                     /gene="ALPL"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:293736"
     misc_feature    order(392..397,404..406,413..418,485..493,497..499,
                     503..505,509..511,521..523,560..568,596..598,641..643,
                     1559..1561,1565..1576,1580..1582,1610..1612,1616..1630,
                     1634..1639,1646..1648)
                     /gene="ALPL"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293736"
ORIGIN      
        1 ggtagcgtcg cgctcccgcc actccgcgcc ttccgtccca acgcaccgac ctctcgtcac
       61 ttgtgccagg acagaccttc gcccacgaac tctgcgcagg attggaacat caattaacta
      121 ctgaccactg gcagcccacc cttcccaccc atatccatca tacctctggg ctccagagaa
      181 aaagcaggtc ttggagtgca ccatgatttc accattctta gtgctggcca ttggcacctg
      241 ccttaccaac tccttagtgc cagagaaaga gaaagacccc aagtactgga gagaccaagc
      301 tcagcagacc ctgaaaaatg ccctgaggct tcagactctc aacaccaacg tggctaagaa
      361 tgtcatcatg ttccttggag atgggatggg cgtctccact gtgacggcgg cccgcatcct
      421 caagggtcag ctccaccaca gcccggggga ggagaccagg ctggagatgg acaagtttcc
      481 ctacgtggcc ctctccaaga cgtacaacac caacgctcag gtccccgaca gcgcgggcac
      541 cgccaccgcc tatttgtgtg gggtgaaggc caatgagggc accgtggggg tgagcgcagc
      601 gacccagcgc accgagtgca acaccactca gggcaacgag gtcacctcca tcctgcgttg
      661 ggccaaggac gcagggaaat ccgtgggcat cgtgaccact acgcgagtga accacgccac
      721 ccccagtgcc gcctacgccc actctgctga ccgggactgg tactcggaca acgagatgcc
      781 cccggaggcc cttagccagg gctgcaagga catcgcctac cagctcatgc acaacgtcag
      841 ggacatcgag gtgatcatgg ggggtggccg gaagtacatg ttccccaaga atagaaccga
      901 tgtggagtat gagatggacg agaaggccag gggcacgagg ctggacggcc tgaacctcat
      961 cgacatctgg aagagcttca aaccgaaaca caagcactct cactatatct ggaaccgcac
     1021 cgaactcctg gccctcgacc cctacaccgt ggactacctc ttgggtctct ttgagccagg
     1081 ggacatgcag tatgaactca acaggaacaa cgtgactgac ccttcactct ccgagatggt
     1141 ggagatggcc atcaggatcc tgagcaagaa ccccaaaggc ttcttcttgc tggtggaagg
     1201 gggaaggatt gaccacgggc accatgaggg caaagccaag caggcactgc acgaggtggt
     1261 ggagatggac cgggcaatcg ggcaggcagg caccatgacc tccgtggaag acacgctgac
     1321 cgttgtcacc gctgaccact cccacgtctt tacctttggc gggtacacac cccgtggcaa
     1381 ctctattttt ggtctggccc ccatggtgag tgacacagac aagaagcctt tcactgccat
     1441 cctgtacggc aacgggcctg gctacaaggt ggtaggcggt gagcgagaga atgtctccat
     1501 ggtggactac gctcacaaca actaccaggc acagtctgcc gtgcccctgc gccacgagac
     1561 ccatggcggg gaggacgtag ccgtcttcgc caagggcccc atggcacacc tgctgcacgg
     1621 cgtccacgag cagaactaca tcccccacgt gatggcttac gcagcctgca tcggtgccaa
     1681 ccacgaccac tgtgcctccg ccagcttgtc aggcagcccc tcgccaggcc ctctgctgtt
     1741 cctgctggcc ctgctccccc tggccatcct gttctgaggg cccagggcct gggcatctac
     1801 cagcccacga cagatggctg gcctccttct ccaagtgctg cccacccccg gcagcccaca
     1861 cctcaagggg cgggaggcag aggcctccac agcctctgca gctgccagaa aggggaccca
     1921 ggaaaccaaa gtctgcctgc tgcccacctc gctccccgct ggaaatctcc accagttgct
     1981 gacctccagc ctctgccccc acccgctgcc cctttggcca acagggtagg tttctcttgg
     2041 acaggcagag agcatggact gcagaacttc tcaaagcatc ttatttttct agcagacgtg
     2101 tttctccaga cccagaggcc ttggagcttc tacagaacat tccggatctg atcctcccac
     2161 tcccctctcc ttccctctgg aacccaccag gccccaccag gctcatgtcc ctgtccccaa
     2221 gcccagtcct aactgcaggg gagaccaagt ccttctcctc aggatggggg tttgctcact
     2281 cactcattcc aaggccgcct ggggctcccg ggaagtcagc tcctgggact ggccatccag
     2341 cccagggtgg cccaggctgg gaagggcagc ctggcagagc agacatttcc cagctctgaa
     2401 cacacatgcc agctcctctc tgaagtgact ctcctgtttg gagcagccaa aaatttttct
     2461 ctttttgatg ttggttaaaa gggaacacaa aacatttaaa taaaactttc caaatatttc
     2521 tga
//
LOCUS       XM_032612542             771 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf185 homolog
            (C1H1orf185), mRNA.
ACCESSION   XM_032612542
VERSION     XM_032612542.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..771
                     /gene="C1H1orf185"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 Proteins"
                     /db_xref="GeneID:116743706"
     CDS             1..690
                     /gene="C1H1orf185"
                     /codon_start=1
                     /product="uncharacterized protein C1orf185 homolog"
                     /protein_id="XP_032468433.1"
                     /db_xref="GeneID:116743706"
                     /translation="MASPNGFFNHLTYFLAAGAVTLGIGFFALASALWFLICKRREIF
                     QDSKFKTIDERCRQRPSKAKIKSHSQCVFISQNFHTGNFQLQEEQRKMETAHKKAIKD
                     YSKDEFCLATRKVICDPSETSSATNPGSVTLSLSTLPSDSYYSQSIEVADDWFSDDSL
                     VKKSPPMPFLREPVMEKVFSYLSTIPLEECTGNVLNMTLYDDQKDDNIKGIFTQRNTE
                     VEIQNLQHNIE"
     misc_feature    19..567
                     /gene="C1H1orf185"
                     /note="Domain of unknown function (DUF4718); Region:
                     DUF4718; pfam15842"
                     /db_xref="CDD:374163"
ORIGIN      
        1 atggcttcac ctaatggttt ttttaaccac ttaacctatt ttctggctgc tggtgctgtt
       61 actttgggaa ttggtttctt tgctttggca tcagctttgt ggttcctgat ttgcaaacga
      121 agagaaatat ttcaagattc caaatttaaa acaattgatg agagatgcag acaaagacca
      181 tcaaaggcaa agattaaatc tcattctcag tgtgttttta tttctcaaaa ttttcatact
      241 ggaaatttcc aattacagga ggagcaaaga aaaatggaaa cagcacataa aaaagcaatt
      301 aaagattatt ctaaagacga attctgcctt gcaacaagaa aggtcatttg tgacccctca
      361 gagactagct cggcaacaaa tcccggcagt gttaccttaa gcttatcaac gttaccatct
      421 gattcttatt acagccaaag tatagaagta gctgatgact ggttttctga tgattcccta
      481 gtgaaaaaga gccctccaat gccttttctc agggagcctg taatggagaa agtattttca
      541 tacttgtcaa ccattccatt agaagaatgt actggaaatg tactaaatat gacactttat
      601 gatgatcaaa aagatgacaa cattaaggga atatttacac aaagaaatac agaggttgaa
      661 atacaaaacc ttcaacataa tattgaatga cttttttctt ttgaaacttt gtgtacactg
      721 aaatcatgta aagttaaaac tgaattacca gcttctgagt ctcttaacgt g
//
LOCUS       XM_032612556            1403 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus troponin T2, cardiac type (TNNT2),
            transcript variant X1, mRNA.
ACCESSION   XM_032612556
VERSION     XM_032612556.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1403
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1403
                     /gene="TNNT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743708"
     CDS             176..1216
                     /gene="TNNT2"
                     /codon_start=1
                     /product="troponin T, cardiac muscle isoform X1"
                     /protein_id="XP_032468447.1"
                     /db_xref="GeneID:116743708"
                     /translation="MGVLGTPRPPADGTSAHAGVSLRCLPARVDGLKLARPGNPAPSR
                     FPRCCERCSVSVQPHTDEADGKPRPSARGLESHASVGGGGDQRGLLGSWGGPVGQPSC
                     LSPVHLLYFLAGGFEPGAMSRSLGFLEPFMPNLVPPKIPDGERVDFDDIHRKRMEKDL
                     NELQTLIEAHFENRKKEEQELVSLKDRIEERRAERAEQQRIRAQRDRERQSRLAEERA
                     RREEEESRRKAEDEARKKKALSNMMHFGGYIQKTERKTGKRQTEREKKKKILAERRKV
                     LAIDHLNEDQLREKAKELRQTIYDLEAEKFDLQEKFKQQKYEINVLRNRINDNQKVSK
                     TRGKAKVTGRWK"
     misc_feature    635..1042
                     /gene="TNNT2"
                     /note="Region: Troponin; pfam00992"
                     /db_xref="CDD:460018"
     misc_feature    965..>1180
                     /gene="TNNT2"
                     /note="Region: Troponin; pfam00992"
                     /db_xref="CDD:460018"
ORIGIN      
        1 ctccatcctc agtggctgag gtggggccgg ggggaagagg gaggacaatt cggggaagcc
       61 aagcagtgag tgtgtgtcag ccccggcgtg tggttcagag cgtcaccgag ggccacacag
      121 ggcaacttgt tgccacacac gtgacactgc ctgggagctc tgggtgctgg gtgggatggg
      181 ggttttggga acgccaaggc cgccagctga cgggacctca gcacacgcag gcgtctccct
      241 gcggtgcctt ccggctcgag tggatggtct gaaactagcc cggcccggaa atccagcccc
      301 ttcccggttc ccccgctgct gtgagcgctg cagcgtctcg gttcagcccc acacagatga
      361 ggcagacggg aaacccaggc ccagcgcccg gggcctggag tcccacgcga gtgtgggagg
      421 gggtggggac cagcgtggcc tcctgggctc ctggggaggt cccgtgggtc agccaagctg
      481 tctgtcacct gtgcatcttc tctacttcct ggctggtggt tttgagccag gcgctatgtc
      541 tcggagtctc ggcttccttg agccgttcat gcccaacctg gtgccgccca agatccccga
      601 cggagagaga gtggactttg acgacatcca ccggaagcgc atggagaagg acctgaacga
      661 gctgcagacg ctgattgagg cgcatttcga gaaccgcaag aaagaggaac aggagctggt
      721 ctccctcaaa gacaggatcg aggaacggcg ggcagaacgg gcggagcagc agcggatccg
      781 ggcgcagcga gacagagagc ggcagagccg cctggccgag gagagggccc gccgagagga
      841 ggaggagagc cggaggaagg ctgaggatga ggcccggaag aagaaggctc tgtctaacat
      901 gatgcatttt ggaggctaca tccagaagac ggagcgtaaa actgggaaga ggcagacgga
      961 gcgggagaag aagaagaaga ttctggccga gaggaggaaa gtgctggcca tcgatcacct
     1021 gaacgaagac cagctgaggg agaaggccaa ggagctgcgg cagaccatct acgacctgga
     1081 agcggagaag ttcgacctgc aggagaagtt caagcagcag aaatacgaga tcaacgttct
     1141 ccgcaacagg atcaatgaca accagaaagt ctccaagacc cgcgggaagg ccaaagtcac
     1201 cgggcgctgg aagtagagct gcagtcgcct tctcccggga tctgctcctc gcggtgtccc
     1261 cgccctgcac accccggctc ccggggtcct ccagcaccgg aggcccgctc ccgccgcaga
     1321 ccaggagctg gcccagccag aagccgcact cgtgcctgac cacgccccca cgcccacgct
     1381 agccagtaat aaaggtcacc acg
//
LOCUS       XM_032612567            1092 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus troponin T2, cardiac type (TNNT2),
            transcript variant X2, mRNA.
ACCESSION   XM_032612567
VERSION     XM_032612567.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1092
                     /gene="TNNT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 49 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743708"
     CDS             54..905
                     /gene="TNNT2"
                     /codon_start=1
                     /product="troponin T, cardiac muscle isoform X2"
                     /protein_id="XP_032468458.1"
                     /db_xref="GeneID:116743708"
                     /translation="MSDAEEAVDKSEGEQEEGTMEEQEEEVEEEAGGGTDAEETNAEE
                     GGEDGDKEAGDGPVEESKPKPRPFMPNLVPPKIPDGERVDFDDIHRKRMEKDLNELQT
                     LIEAHFENRKKEEQELVSLKDRIEERRAERAEQQRIRAQRDRERQSRLAEERARREEE
                     ESRRKAEDEARKKKALSNMMHFGGYIQKTERKTGKRQTEREKKKKILAERRKVLAIDH
                     LNEDQLREKAKELRQTIYDLEAEKFDLQEKFKQQKYEINVLRNRINDNQKVSKTRGKA
                     KVTGRWK"
     misc_feature    324..731
                     /gene="TNNT2"
                     /note="Region: Troponin; pfam00992"
                     /db_xref="CDD:460018"
     misc_feature    654..>857
                     /gene="TNNT2"
                     /note="Region: Troponin; pfam00992"
                     /db_xref="CDD:460018"
ORIGIN      
        1 ggccgcggac accgcaggac ccgtcttcgg cagctcctgc tctggcggag accatgtcgg
       61 acgcggagga ggcggtggac aagtccgagg gggagcagga agaaggaacc atggaagaac
      121 aggaggagga agtggaagaa gaggctggag gcgggactga cgcggaggag actaacgccg
      181 aagaaggtgg agaagacgga gataaagagg ctggagatgg cccagtggag gagtccaagc
      241 ccaagcccag gccgttcatg cccaacctgg tgccgcccaa gatccccgac ggagagagag
      301 tggactttga cgacatccac cggaagcgca tggagaagga cctgaacgag ctgcagacgc
      361 tgattgaggc gcatttcgag aaccgcaaga aagaggaaca ggagctggtc tccctcaaag
      421 acaggatcga ggaacggcgg gcagaacggg cggagcagca gcggatccgg gcgcagcgag
      481 acagagagcg gcagagccgc ctggccgagg agagggcccg ccgagaggag gaggagagcc
      541 ggaggaaggc tgaggatgag gcccggaaga agaaggctct gtctaacatg atgcattttg
      601 gaggctacat ccagaagacg gagcgtaaaa ctgggaagag gcagacggag cgggagaaga
      661 agaagaagat tctggccgag aggaggaaag tgctggccat cgatcacctg aacgaagacc
      721 agctgaggga gaaggccaag gagctgcggc agaccatcta cgacctggaa gcggagaagt
      781 tcgacctgca ggagaagttc aagcagcaga aatacgagat caacgttctc cgcaacagga
      841 tcaatgacaa ccagaaagtc tccaagaccc gcgggaaggc caaagtcacc gggcgctgga
      901 agtagagctg cagtcgcctt ctcccgggat ctgctcctcg cggtgtcccc gccctgcaca
      961 ccccggctcc cggggtcctc cagcaccgga ggcccgctcc cgccgcagac caggagctgg
     1021 cccagccaga agccgcactc gtgcctgacc acgcccccac gcccacgcta gccagtaata
     1081 aaggtcacca cg
//
LOCUS       XR_004346861            1089 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743711
            (LOC116743711), ncRNA.
ACCESSION   XR_004346861
VERSION     XR_004346861.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1089
                     /gene="LOC116743711"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 91% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743711"
     ncRNA           1..1089
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743711"
                     /product="uncharacterized LOC116743711"
                     /db_xref="GeneID:116743711"
ORIGIN      
        1 ctcctcagag cctggatggc gcccaggctg atggctgcag tcagggcagg aaccagccgg
       61 catctctcag ctcctcctct tgcctcaaat ggaggaggct cagaaggctc cttttcttcc
      121 ctgcggctga gcttgccctg tggattctgt cttctgagtg aaaggtggtt gtgaggactg
      181 agttaacaca tgcaaatcat acttggaaga gagccgggcc tgagcttttc aagcccaaac
      241 atcagtgctg ctctgcctgc tggggagatc ccaaagctgg ttgggagttg gaagaagcct
      301 tgttctgtcg cttagacatt tccacatcaa tgtctctggc ctggctgctg cttctgagct
      361 gacctggggc ctgtcctgat ccccaggctc ctccctggtg agtagggccc tgtggagctc
      421 cagggcacaa aagcctttct gtgtccccca ttttcttcga ttacaggaaa taggcttcat
      481 tcagcctcca tgaccttccc tgagttccaa cgggcagatt caaggggttg ttaatcaggg
      541 aagggaaggg atgtggagac aagggagaaa cagtcaagag aaacaatagt cagccttggg
      601 gcagggtcct ggttccccat caagggatac acgcaacagt atctttgagc tgtttttcag
      661 atactgaaac ccccactaga tggaagaaat taatggttaa cgatggtatg ctgcccacaa
      721 gcacgtagac cccagaccag ctggaaccaa aaggttgatg atgctgactt ccaattgcct
      781 caccaccaac caatcagaag aatgtccacg agctgatcat gccctctttg aaccattatt
      841 ataaaacttc tcactaccct ctccaagttg ggtcacgcag ttttgagggc attagcctgc
      901 tgtggcaccc tttgcctggc aaagcaataa agctattctt ttctacttca cccaaaactc
      961 tgtctcctag atttcattcg ttgttggggt gcagaggctg cattcggctt cactggtcct
     1021 ctggccaagt ccccctcatg ccacacttcc acacactgac agcctcttgg acctcaaact
     1081 catccaacc
//
LOCUS       XM_032612591             363 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus guanylate cyclase activator 2B (GUCA2B),
            mRNA.
ACCESSION   XM_032612591
VERSION     XM_032612591.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..363
                     /gene="GUCA2B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 93% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743715"
     CDS             1..342
                     /gene="GUCA2B"
                     /codon_start=1
                     /product="guanylate cyclase activator 2B"
                     /protein_id="XP_032468482.1"
                     /db_xref="GeneID:116743715"
                     /translation="MATRALSGLLLCGVAVVFLVLLQGAQSVYIQYQGFQVQLESVKK
                     LSDLEGQWMPSPGLKTQRSQHSMCHYPALPLDLQPICASGEADSIFQALRTIAADDCE
                     LCVNVACTGCS"
     misc_feature    82..336
                     /gene="GUCA2B"
                     /note="Guanylin precursor; Region: Guanylin; pfam02058"
                     /db_xref="CDD:460430"
ORIGIN      
        1 atggctacca gggcactgtc agggctgctg ctgtgtgggg ttgctgtggt cttcctggta
       61 ctgctgcagg gtgcacagtc agtctacatc cagtaccaag gcttccaggt ccagctggaa
      121 tcggtgaaga agctgagtga cctggagggg caatggatgc ccagccctgg cctgaaaacc
      181 cagaggtccc agcactccat gtgccactac ccggccctgc cactggacct ccagcccatc
      241 tgtgcctctg gggaagcgga cagcattttc caggccttga ggaccatcgc tgctgatgac
      301 tgcgagctgt gcgtgaatgt tgcctgtact ggctgcagct aagatggcct gggtgccctg
      361 agc
//
LOCUS       XM_032612602            1812 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 181
            (CCDC181), mRNA.
ACCESSION   XM_032612602
VERSION     XM_032612602.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-133               VOSU01000011.1     126516295-126516427 c
            134-244             VOSU01000011.1     126509275-126509385 c
            245-358             VOSU01000011.1     126506638-126506751 c
            359-359             "N"                1-1
            360-400             VOSU01000011.1     126506597-126506637 c
            401-401             "N"                1-1
            402-898             VOSU01000011.1     126506100-126506596 c
            899-899             "N"                1-1
            900-1195            VOSU01000011.1     126505804-126506099 c
            1196-1342           VOSU01000011.1     126501384-126501530 c
            1343-1497           VOSU01000011.1     126489739-126489893 c
            1498-1812           VOSU01000011.1     126487695-126488009 c
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1812
                     /gene="CCDC181"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743721"
     CDS             53..1660
                     /gene="CCDC181"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: coiled-coil
                     domain-containing protein 181"
                     /protein_id="XP_032468493.1"
                     /db_xref="GeneID:116743721"
                     /translation="MLGFPGRFLRNRSQRGRLPAPGGASGEKMDENQEADSGEYEDDF
                     EKDLEWLINEKEKSGASIIEKVCGNEENINQGLKENETEIEHSKQLSDPDRSFKDEVS
                     XNKNDFISVPSIQPXDPISDSDSENSLQESKLESQQDLEEEEDEEVRRYIMEKIIQAN
                     KLLQNQEPVNDKRERKLKFKDKLVDLEVPPLEDTDTYKNYLENESNVSGKLSQLCISN
                     EFAQENVLLSPTDGNSEENTDRKILVERDGKFELLNLQDIESQGVLPPINNANYTENE
                     PQQLSPXSPNLSVSGVKKEEPIAKIHALAHLSTEEQLAYIPQPPPTPRTHPGSAANSD
                     RSKGNGKSSHRTRSADVSPVTSTYCLSPQQKELQKRLEQKREKLKREEEQRKIEEEKE
                     KKKENDLVFKAWLQKKREQVLEMRRIQRAKQIEDMNSRQENRDAQQAFRLWLKKKHEE
                     QLKERKTEELRKQEECLFFLKGTEGRERAFKQWLRRKRIEKLAEQQAVKERTRQLRLE
                     AKRSKQLQYHLYNTSEAKSFRFTDHYS"
     misc_feature    <1268..1597
                     /gene="CCDC181"
                     /note="Coiled-coil domain-containing protein 3; Region:
                     CCDC34; pfam13904"
                     /db_xref="CDD:464032"
ORIGIN      
        1 cagacagtaa actttcccca attcgtacta accctcgtga aacttatggg tgatgcttgg
       61 atttcctggt cgtttcctca gaaaccgcag ccagagaggt cgtttgcccg caccaggagg
      121 agcgtccgga gagaaaatgg atgaaaatca agaagctgat agtggagaat atgaagatga
      181 ctttgaaaag gacctggaat ggttgattaa tgaaaaagaa aaaagtggtg ccagcataat
      241 agagaaggtt tgtgggaatg aagagaatat taaccaaggc ttaaaagaga atgaaacaga
      301 aatagaacat tccaagcagc tttctgatcc tgacagatct ttcaaggatg aggtttcant
      361 caataagaat gacttcattt ctgtaccaag tattcaacct nttgatccca tatcagattc
      421 agacagtgaa aactctttac aggaatccaa actagaaagc cagcaagacc tggaggagga
      481 agaggatgag gaagtaagga gatatattat ggagaaaatt atacaagcca acaagcttct
      541 acaaaatcaa gaacctgtga atgataaaag ggaaagaaaa cttaaattca aggacaaatt
      601 agttgatttg gaagttcctc ctctggaaga cactgatact tacaaaaatt atcttgaaaa
      661 tgaaagtaat gtgtctggaa aactgtctca gttatgtatt tccaatgaat ttgcacaaga
      721 aaatgtgctc ctgtcgccta ctgatggaaa ttctgaagaa aacacggata gaaaaatact
      781 agtagagaga gatggaaagt ttgaacttct gaatttacaa gacattgaga gtcagggggt
      841 tttgcccccc attaataatg ctaattatac agaaaatgag cctcagcagt tgtcaccang
      901 atctcccaat ttatctgtca gtggagtcaa gaaagaagag ccaatagcaa aaattcatgc
      961 tctggctcac ttatcaacag aagagcaact ggcttatatc cctcagccac caccaacccc
     1021 aaggactcat ccaggttctg ctgccaactc agatcgaagt aaggggaatg gaaaatctag
     1081 tcataggaca cggtctgcag atgtatctcc agtgacctca acatactgtc tctctcctca
     1141 acagaaagaa ctgcaaaaac gactagaaca aaagagagaa aagctaaaga gagaggaaga
     1201 acaaaggaaa atagaagaag agaaagaaaa gaaaaaagag aatgacttgg tgtttaaagc
     1261 atggttgcaa aagaagagag agcaggtcct agaaatgagg agaattcagc gagcaaagca
     1321 aattgaagac atgaacagta gacaggaaaa cagagatgca cagcaagctt ttcgattatg
     1381 gcttaaaaaa aagcacgaag aacagttgaa agaaagaaag acagaagaac tgcgaaagca
     1441 agaggaatgc ttattcttcc ttaaaggaac agaaggccgt gaaagggcct ttaaacaatg
     1501 gctaagaagg aaacggatag aaaaactagc agagcagcaa gctgtcaaag aaagaactag
     1561 acagctccga ctggaagcaa agcgttctaa acagttacag taccacctat ataatacgtc
     1621 agaagccaaa tcttttcgtt ttactgatca ttacagctga aggtatctat taaatacttc
     1681 atttggaagc tactgtcctc aaaattttgg atatcatttc ttacggtctg tgtgctttgg
     1741 tcatactcta aattatggaa atgctattta tcttttggta atgttgatag tgaatttatc
     1801 ttatttcttt ta
//
LOCUS       XM_032612622             270 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SNRPN upstream reading frame protein-like
            (LOC116743737), mRNA.
ACCESSION   XM_032612622
VERSION     XM_032612622.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..270
                     /gene="LOC116743737"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 34% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743737"
     CDS             1..270
                     /gene="LOC116743737"
                     /codon_start=1
                     /product="SNRPN upstream reading frame protein-like"
                     /protein_id="XP_032468513.1"
                     /db_xref="GeneID:116743737"
                     /translation="MERALETFCSEERPVARWSRARDRLHLRWTMEQHIPEVEVQVKR
                     RRTALLRNQECRLYPRWSQRQQQVPVVEFHVELRQAFLTETPRGG"
     misc_feature    58..261
                     /gene="LOC116743737"
                     /note="SNURF/RPN4 protein; Region: SNURF; pfam07192"
                     /db_xref="CDD:462115"
ORIGIN      
        1 atggaacggg cactggagac attctgttct gaggagcggc cagtggcacg atggagcagg
       61 gccagggacc gcttacactt gagatggacc atggaacagc acatcccaga ggtggaagtc
      121 caagtcaaac gaagaaggac agccttgctg cgcaaccagg agtgtcgcct gtacccgagg
      181 tggtctcagc ggcagcagca agtacctgtg gtggaattcc atgtggaact gagacaggca
      241 ttcttaactg agacgccaag aggtggttaa
//
LOCUS       XM_032612635            1347 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microfibril associated protein 2 (MFAP2),
            transcript variant X1, mRNA.
ACCESSION   XM_032612635
VERSION     XM_032612635.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1347
                     /gene="MFAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743743"
     CDS             375..926
                     /gene="MFAP2"
                     /codon_start=1
                     /product="microfibrillar-associated protein 2 isoform X1"
                     /protein_id="XP_032468526.1"
                     /db_xref="GeneID:116743743"
                     /translation="MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDN
                     PDYYDYQEVTPRPPEEQFQFQSQQQVQQEVIPAPTLEPGTVETEPTEPGPLDCREEQY
                     PCTRLYSIHKPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKC
                     GVMASSGLCQSVAASCARSCGGC"
     misc_feature    375..842
                     /gene="MFAP2"
                     /note="Microfibril-associated glycoprotein (MAGP); Region:
                     MAGP; pfam05507"
                     /db_xref="CDD:461667"
ORIGIN      
        1 gcacgcccac ttcacccatc tcaccacttt gcgctccagc tgtgatgagg ccgtgaggag
       61 aaagcatttt gcacagcgga aagtgctgaa cagacgtgag gctggctccg tgggcgcctc
      121 ctccccgcgg ggctgccccc agaagagggt agaagacccg aggtcgcggc gtggcggccc
      181 cggcggcggc ggcggcgctc gcgttaggac ccagcggatc caggctggag ggcgggcgcc
      241 ggccccgtcg ggggcccgga ggggggttcg gagcgggcaa aggggcggct ccggcgggcg
      301 gactcggagc gggccgcgga gtgacccggc cagctgtccc ttgacaccag tccagcccgc
      361 ctcgttgtgt aaccatgaga gctgcctacc tcttcctgct gttcctgcct gcaggcctgc
      421 tggctcaggg ccagtacgac ctggatccgc tgcctccgtt cccagaccac gtccagtaca
      481 cccactatag cgaccagatc gacaacccgg actactatga ttatcaagag gtgactcctc
      541 ggcccccgga ggagcagttt cagttccagt cccagcagca agtccaacag gaagtcatcc
      601 cagctcccac cttagaacca ggaactgtag agacggagcc cacggagcct gggcctctgg
      661 actgccgcga ggagcagtac ccgtgtaccc gcctctactc catacacaag ccttgtaaac
      721 agtgtctcaa cgaggtctgc ttctacagcc tccgccgtgt gtatgttatc aacaaggaaa
      781 tctgtgtccg cacggtctgt gcccacgagg agctcctgcg agctgacctg tgtcgtgaca
      841 agttctccaa atgtggcgtg atggccagca gcggcctgtg ccaatctgtg gcagcctcct
      901 gtgccaggag ctgcgggggc tgctagggtg ggactggcac cccgagcccc ggaccctcct
      961 cgatctgggg ccctcaggct ctgcctgacc tggtgctttt ctccccagcc agacgttcct
     1021 tttatcccgt aaaatgttag tggctgcagc gccgggggtt gcctcaggcc cttcccccag
     1081 cctgtggcca cccctggggc acaaaggggg ctccagtctc cgcccccagt tgggggacat
     1141 cccaggcctc tctacgggac ctgggcccct gatgtgcctt ctccatccct ctgaggacag
     1201 tcccccactc cagccccacc cccaaggtag gctatgaccc tcaccccagc tggtctgctt
     1261 ggatttccta cagcccctgg gcatagacca cctttgtttt atacaaaatt aaaaacaggt
     1321 ttttacaaaa gattcagagt cactttt
//
LOCUS       XM_032612643            1426 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microfibril associated protein 2 (MFAP2),
            transcript variant X2, mRNA.
ACCESSION   XM_032612643
VERSION     XM_032612643.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1426
                     /gene="MFAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743743"
     CDS             454..1005
                     /gene="MFAP2"
                     /codon_start=1
                     /product="microfibrillar-associated protein 2 isoform X1"
                     /protein_id="XP_032468534.1"
                     /db_xref="GeneID:116743743"
                     /translation="MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDN
                     PDYYDYQEVTPRPPEEQFQFQSQQQVQQEVIPAPTLEPGTVETEPTEPGPLDCREEQY
                     PCTRLYSIHKPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKC
                     GVMASSGLCQSVAASCARSCGGC"
     misc_feature    454..921
                     /gene="MFAP2"
                     /note="Microfibril-associated glycoprotein (MAGP); Region:
                     MAGP; pfam05507"
                     /db_xref="CDD:461667"
ORIGIN      
        1 agcacgccca cttcacccat ctcaccactt tgcgctccag ctgtgatgag gccgtgagga
       61 gaaagcattt tgcacagcgg aaagtgctga acagacgtga ggctggctcc gtgggcgcct
      121 cctccccgcg gggctgcccc cagaagaggg tagaagaccc gaggtcgcgg cgtggcggcc
      181 ccggcggcgg cggcggcgct cgcgttagga cccagcggat ccaggctgga gggcgggcgc
      241 cggccccgtc gggggcccgg aggggggttc ggagcgggca aaggggcggc tccggcgggc
      301 ggactcggag cgggccgcgg agtgacccgg ccagctgtgc ggcgctgcaa catctggttt
      361 cctccagccg gaccccagcc cggcctctgg agcagacaga gcctccagca gactgtccct
      421 tgacaccagt ccagcccgcc tcgttgtgta accatgagag ctgcctacct cttcctgctg
      481 ttcctgcctg caggcctgct ggctcagggc cagtacgacc tggatccgct gcctccgttc
      541 ccagaccacg tccagtacac ccactatagc gaccagatcg acaacccgga ctactatgat
      601 tatcaagagg tgactcctcg gcccccggag gagcagtttc agttccagtc ccagcagcaa
      661 gtccaacagg aagtcatccc agctcccacc ttagaaccag gaactgtaga gacggagccc
      721 acggagcctg ggcctctgga ctgccgcgag gagcagtacc cgtgtacccg cctctactcc
      781 atacacaagc cttgtaaaca gtgtctcaac gaggtctgct tctacagcct ccgccgtgtg
      841 tatgttatca acaaggaaat ctgtgtccgc acggtctgtg cccacgagga gctcctgcga
      901 gctgacctgt gtcgtgacaa gttctccaaa tgtggcgtga tggccagcag cggcctgtgc
      961 caatctgtgg cagcctcctg tgccaggagc tgcgggggct gctagggtgg gactggcacc
     1021 ccgagccccg gaccctcctc gatctggggc cctcaggctc tgcctgacct ggtgcttttc
     1081 tccccagcca gacgttcctt ttatcccgta aaatgttagt ggctgcagcg ccgggggttg
     1141 cctcaggccc ttcccccagc ctgtggccac ccctggggca caaagggggc tccagtctcc
     1201 gcccccagtt gggggacatc ccaggcctct ctacgggacc tgggcccctg atgtgccttc
     1261 tccatccctc tgaggacagt cccccactcc agccccaccc ccaaggtagg ctatgaccct
     1321 caccccagct ggtctgcttg gatttcctac agcccctggg catagaccac ctttgtttta
     1381 tacaaaatta aaaacaggtt tttacaaaag attcagagtc actttt
//
LOCUS       XM_032612654            1466 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microfibril associated protein 2 (MFAP2),
            transcript variant X3, mRNA.
ACCESSION   XM_032612654
VERSION     XM_032612654.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1466
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1466
                     /gene="MFAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 5 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743743"
     CDS             494..1045
                     /gene="MFAP2"
                     /codon_start=1
                     /product="microfibrillar-associated protein 2 isoform X1"
                     /protein_id="XP_032468545.1"
                     /db_xref="GeneID:116743743"
                     /translation="MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDN
                     PDYYDYQEVTPRPPEEQFQFQSQQQVQQEVIPAPTLEPGTVETEPTEPGPLDCREEQY
                     PCTRLYSIHKPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKC
                     GVMASSGLCQSVAASCARSCGGC"
     misc_feature    494..961
                     /gene="MFAP2"
                     /note="Microfibril-associated glycoprotein (MAGP); Region:
                     MAGP; pfam05507"
                     /db_xref="CDD:461667"
ORIGIN      
        1 agcacgccca cttcacccat ctcaccactt tgcgctccag ctgtgatgag gccgtgagga
       61 gaaagcattt tgcacagcgg aaagtgctga acagacgtga ggctggctcc gtgggcgcct
      121 cctccccgcg gggctgcccc cagaagaggg tagaagaccc gaggtcgcgg cgtggcggcc
      181 ccggcggcgg cggcggcgct cgcgttagga cccagcggat ccaggctgga gggcgggcgc
      241 cggccccgtc gggggcccgg aggggggttc ggagcgggca aaggggcggc tccggcgggc
      301 ggactcggag cgggccgcgg agtgacccgg ccaggttggg ggacatcacg gtccccttca
      361 gcgctaccct ctaggatctg gagaggcgct tttcagactc caccctaagt gcttcctgct
      421 gcagcagaca aggagacctc agtctcagtc tcctgtccct tgacaccagt ccagcccgcc
      481 tcgttgtgta accatgagag ctgcctacct cttcctgctg ttcctgcctg caggcctgct
      541 ggctcagggc cagtacgacc tggatccgct gcctccgttc ccagaccacg tccagtacac
      601 ccactatagc gaccagatcg acaacccgga ctactatgat tatcaagagg tgactcctcg
      661 gcccccggag gagcagtttc agttccagtc ccagcagcaa gtccaacagg aagtcatccc
      721 agctcccacc ttagaaccag gaactgtaga gacggagccc acggagcctg ggcctctgga
      781 ctgccgcgag gagcagtacc cgtgtacccg cctctactcc atacacaagc cttgtaaaca
      841 gtgtctcaac gaggtctgct tctacagcct ccgccgtgtg tatgttatca acaaggaaat
      901 ctgtgtccgc acggtctgtg cccacgagga gctcctgcga gctgacctgt gtcgtgacaa
      961 gttctccaaa tgtggcgtga tggccagcag cggcctgtgc caatctgtgg cagcctcctg
     1021 tgccaggagc tgcgggggct gctagggtgg gactggcacc ccgagccccg gaccctcctc
     1081 gatctggggc cctcaggctc tgcctgacct ggtgcttttc tccccagcca gacgttcctt
     1141 ttatcccgta aaatgttagt ggctgcagcg ccgggggttg cctcaggccc ttcccccagc
     1201 ctgtggccac ccctggggca caaagggggc tccagtctcc gcccccagtt gggggacatc
     1261 ccaggcctct ctacgggacc tgggcccctg atgtgccttc tccatccctc tgaggacagt
     1321 cccccactcc agccccaccc ccaaggtagg ctatgaccct caccccagct ggtctgcttg
     1381 gatttcctac agcccctggg catagaccac ctttgtttta tacaaaatta aaaacaggtt
     1441 tttacaaaag attcagagtc actttt
//
LOCUS       XM_032612664            1504 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microfibril associated protein 2 (MFAP2),
            transcript variant X4, mRNA.
ACCESSION   XM_032612664
VERSION     XM_032612664.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1504
                     /gene="MFAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743743"
     CDS             386..937
                     /gene="MFAP2"
                     /codon_start=1
                     /product="microfibrillar-associated protein 2 isoform X2"
                     /protein_id="XP_032468555.1"
                     /db_xref="GeneID:116743743"
                     /translation="MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDN
                     PDYYDYQEVTPRPPEEQFQFQSQQQVQQEVIPAPTLEPGTVETEPTEPGPLDCREEQY
                     PCTRLYSIHKPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRGPLPGNPELPS
                     RLLFILRTSPITTVGAGVAVSIT"
     misc_feature    386..841
                     /gene="MFAP2"
                     /note="Microfibril-associated glycoprotein (MAGP); Region:
                     MAGP; pfam05507"
                     /db_xref="CDD:461667"
ORIGIN      
        1 aaatgggggc agcacgccca cttcacccat ctcaccactt tgcgctccag ctgtgatgag
       61 gccgtgagga gaaagcattt tgcacagcgg aaagtgctga acagacgtga ggctggctcc
      121 gtgggcgcct cctccccgcg gggctgcccc cagaagaggg tagaagaccc gaggtcgcgg
      181 cgtggcggcc ccggcggcgg cggcggcgct cgcgttagga cccagcggat ccaggctgga
      241 gggcgggcgc cggccccgtc gggggcccgg aggggggttc ggagcgggca aaggggcggc
      301 tccggcgggc ggactcggag cgggccgcgg agtgacccgg ccagctgtcc cttgacacca
      361 gtccagcccg cctcgttgtg taaccatgag agctgcctac ctcttcctgc tgttcctgcc
      421 tgcaggcctg ctggctcagg gccagtacga cctggatccg ctgcctccgt tcccagacca
      481 cgtccagtac acccactata gcgaccagat cgacaacccg gactactatg attatcaaga
      541 ggtgactcct cggcccccgg aggagcagtt tcagttccag tcccagcagc aagtccaaca
      601 ggaagtcatc ccagctccca ccttagaacc aggaactgta gagacggagc ccacggagcc
      661 tgggcctctg gactgccgcg aggagcagta cccgtgtacc cgcctctact ccatacacaa
      721 gccttgtaaa cagtgtctca acgaggtctg cttctacagc ctccgccgtg tgtatgttat
      781 caacaaggaa atctgtgtcc gcacggtctg tgcccacgag gagctcctgc gagggccact
      841 tccggggaat cctgagctcc cctcccggct gctttttatc ctcagaacat cccccatcac
      901 cacggttggg gcgggggtag cagtttccat cacctagccg caccctgacc cccactcctt
      961 cctgccaccc ccaacagctg acctgtgtcg tgacaagttc tccaaatgtg gcgtgatggc
     1021 cagcagcggc ctgtgccaat ctgtggcagc ctcctgtgcc aggagctgcg ggggctgcta
     1081 gggtgggact ggcaccccga gccccggacc ctcctcgatc tggggccctc aggctctgcc
     1141 tgacctggtg cttttctccc cagccagacg ttccttttat cccgtaaaat gttagtggct
     1201 gcagcgccgg gggttgcctc aggcccttcc cccagcctgt ggccacccct ggggcacaaa
     1261 gggggctcca gtctccgccc ccagttgggg gacatcccag gcctctctac gggacctggg
     1321 cccctgatgt gccttctcca tccctctgag gacagtcccc cactccagcc ccacccccaa
     1381 ggtaggctat gaccctcacc ccagctggtc tgcttggatt tcctacagcc cctgggcata
     1441 gaccaccttt gttttataca aaattaaaaa caggttttta caaaagattc agagtcactt
     1501 tttc
//
LOCUS       XM_032612674            1583 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microfibril associated protein 2 (MFAP2),
            transcript variant X5, mRNA.
ACCESSION   XM_032612674
VERSION     XM_032612674.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1583
                     /gene="MFAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743743"
     CDS             465..1016
                     /gene="MFAP2"
                     /codon_start=1
                     /product="microfibrillar-associated protein 2 isoform X2"
                     /protein_id="XP_032468565.1"
                     /db_xref="GeneID:116743743"
                     /translation="MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDN
                     PDYYDYQEVTPRPPEEQFQFQSQQQVQQEVIPAPTLEPGTVETEPTEPGPLDCREEQY
                     PCTRLYSIHKPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRGPLPGNPELPS
                     RLLFILRTSPITTVGAGVAVSIT"
     misc_feature    465..920
                     /gene="MFAP2"
                     /note="Microfibril-associated glycoprotein (MAGP); Region:
                     MAGP; pfam05507"
                     /db_xref="CDD:461667"
ORIGIN      
        1 aaaatggggg cagcacgccc acttcaccca tctcaccact ttgcgctcca gctgtgatga
       61 ggccgtgagg agaaagcatt ttgcacagcg gaaagtgctg aacagacgtg aggctggctc
      121 cgtgggcgcc tcctccccgc ggggctgccc ccagaagagg gtagaagacc cgaggtcgcg
      181 gcgtggcggc cccggcggcg gcggcggcgc tcgcgttagg acccagcgga tccaggctgg
      241 agggcgggcg ccggccccgt cgggggcccg gaggggggtt cggagcgggc aaaggggcgg
      301 ctccggcggg cggactcgga gcgggccgcg gagtgacccg gccagctgtg cggcgctgca
      361 acatctggtt tcctccagcc ggaccccagc ccggcctctg gagcagacag agcctccagc
      421 agactgtccc ttgacaccag tccagcccgc ctcgttgtgt aaccatgaga gctgcctacc
      481 tcttcctgct gttcctgcct gcaggcctgc tggctcaggg ccagtacgac ctggatccgc
      541 tgcctccgtt cccagaccac gtccagtaca cccactatag cgaccagatc gacaacccgg
      601 actactatga ttatcaagag gtgactcctc ggcccccgga ggagcagttt cagttccagt
      661 cccagcagca agtccaacag gaagtcatcc cagctcccac cttagaacca ggaactgtag
      721 agacggagcc cacggagcct gggcctctgg actgccgcga ggagcagtac ccgtgtaccc
      781 gcctctactc catacacaag ccttgtaaac agtgtctcaa cgaggtctgc ttctacagcc
      841 tccgccgtgt gtatgttatc aacaaggaaa tctgtgtccg cacggtctgt gcccacgagg
      901 agctcctgcg agggccactt ccggggaatc ctgagctccc ctcccggctg ctttttatcc
      961 tcagaacatc ccccatcacc acggttgggg cgggggtagc agtttccatc acctagccgc
     1021 accctgaccc ccactccttc ctgccacccc caacagctga cctgtgtcgt gacaagttct
     1081 ccaaatgtgg cgtgatggcc agcagcggcc tgtgccaatc tgtggcagcc tcctgtgcca
     1141 ggagctgcgg gggctgctag ggtgggactg gcaccccgag ccccggaccc tcctcgatct
     1201 ggggccctca ggctctgcct gacctggtgc ttttctcccc agccagacgt tccttttatc
     1261 ccgtaaaatg ttagtggctg cagcgccggg ggttgcctca ggcccttccc ccagcctgtg
     1321 gccacccctg gggcacaaag ggggctccag tctccgcccc cagttggggg acatcccagg
     1381 cctctctacg ggacctgggc ccctgatgtg ccttctccat ccctctgagg acagtccccc
     1441 actccagccc cacccccaag gtaggctatg accctcaccc cagctggtct gcttggattt
     1501 cctacagccc ctgggcatag accacctttg ttttatacaa aattaaaaac aggtttttac
     1561 aaaagattca gagtcacttt ttc
//
LOCUS       XM_032612682            1347 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microfibril associated protein 2 (MFAP2),
            transcript variant X6, mRNA.
ACCESSION   XM_032612682
VERSION     XM_032612682.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1347
                     /gene="MFAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743743"
     CDS             377..925
                     /gene="MFAP2"
                     /codon_start=1
                     /product="microfibrillar-associated protein 2 isoform X3"
                     /protein_id="XP_032468573.1"
                     /db_xref="GeneID:116743743"
                     /translation="MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNP
                     DYYDYQEVTPRPPEEQFQFQSQQQVQQEVIPAPTLEPGTVETEPTEPGPLDCREEQYP
                     CTRLYSIHKPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCG
                     VMASSGLCQSVAASCARSCGGC"
     misc_feature    524..841
                     /gene="MFAP2"
                     /note="Microfibril-associated glycoprotein (MAGP); Region:
                     MAGP; pfam05507"
                     /db_xref="CDD:461667"
ORIGIN      
        1 cagcacgccc acttcaccca tctcaccact ttgcgctcca gctgtgatga ggccgtgagg
       61 agaaagcatt ttgcacagcg gaaagtgctg aacagacgtg aggctggctc cgtgggcgcc
      121 tcctccccgc ggggctgccc ccagaagagg gtagaagacc cgaggtcgcg gcgtggcggc
      181 cccggcggcg gcggcggcgc tcgcgttagg acccagcgga tccaggctgg agggcgggcg
      241 ccggccccgt cgggggcccg gaggggggtt cggagcgggc aaaggggcgg ctccggcggg
      301 cggactcgga gcgggccgcg gagtgacccg gccagctgtc ccttgacacc agtccagccc
      361 gcctcgttgt gtaaccatga gagctgccta cctcttcctg ctgttcctgc ctggcctgct
      421 ggctcagggc cagtacgacc tggatccgct gcctccgttc ccagaccacg tccagtacac
      481 ccactatagc gaccagatcg acaacccgga ctactatgat tatcaagagg tgactcctcg
      541 gcccccggag gagcagtttc agttccagtc ccagcagcaa gtccaacagg aagtcatccc
      601 agctcccacc ttagaaccag gaactgtaga gacggagccc acggagcctg ggcctctgga
      661 ctgccgcgag gagcagtacc cgtgtacccg cctctactcc atacacaagc cttgtaaaca
      721 gtgtctcaac gaggtctgct tctacagcct ccgccgtgtg tatgttatca acaaggaaat
      781 ctgtgtccgc acggtctgtg cccacgagga gctcctgcga gctgacctgt gtcgtgacaa
      841 gttctccaaa tgtggcgtga tggccagcag cggcctgtgc caatctgtgg cagcctcctg
      901 tgccaggagc tgcgggggct gctagggtgg gactggcacc ccgagccccg gaccctcctc
      961 gatctggggc cctcaggctc tgcctgacct ggtgcttttc tccccagcca gacgttcctt
     1021 ttatcccgta aaatgttagt ggctgcagcg ccgggggttg cctcaggccc ttcccccagc
     1081 ctgtggccac ccctggggca caaagggggc tccagtctcc gcccccagtt gggggacatc
     1141 ccaggcctct ctacgggacc tgggcccctg atgtgccttc tccatccctc tgaggacagt
     1201 cccccactcc agccccaccc ccaaggtagg ctatgaccct caccccagct ggtctgcttg
     1261 gatttcctac agcccctggg catagaccac ctttgtttta tacaaaatta aaaacaggtt
     1321 tttacaaaag attcagagtc acttttt
//
LOCUS       XM_032612691            1228 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microfibril associated protein 2 (MFAP2),
            transcript variant X7, mRNA.
ACCESSION   XM_032612691
VERSION     XM_032612691.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1228
                     /gene="MFAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743743"
     CDS             258..806
                     /gene="MFAP2"
                     /codon_start=1
                     /product="microfibrillar-associated protein 2 isoform X3"
                     /protein_id="XP_032468582.1"
                     /db_xref="GeneID:116743743"
                     /translation="MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNP
                     DYYDYQEVTPRPPEEQFQFQSQQQVQQEVIPAPTLEPGTVETEPTEPGPLDCREEQYP
                     CTRLYSIHKPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCG
                     VMASSGLCQSVAASCARSCGGC"
     misc_feature    405..722
                     /gene="MFAP2"
                     /note="Microfibril-associated glycoprotein (MAGP); Region:
                     MAGP; pfam05507"
                     /db_xref="CDD:461667"
ORIGIN      
        1 gttggaatgc ggcggctggg gtgtgggtgt ccggcgggag cggcggggac agagacgcgg
       61 agagacaaag agagatcaga gaccgagaga gcgcgaggga gcgcgcccga gcaagtttcc
      121 gtggctgatt gttcccagct gtgcggcgct gcaacatctg gtttcctcca gccggacccc
      181 agcccggcct ctggagcaga cagagcctcc agcagactgt cccttgacac cagtccagcc
      241 cgcctcgttg tgtaaccatg agagctgcct acctcttcct gctgttcctg cctggcctgc
      301 tggctcaggg ccagtacgac ctggatccgc tgcctccgtt cccagaccac gtccagtaca
      361 cccactatag cgaccagatc gacaacccgg actactatga ttatcaagag gtgactcctc
      421 ggcccccgga ggagcagttt cagttccagt cccagcagca agtccaacag gaagtcatcc
      481 cagctcccac cttagaacca ggaactgtag agacggagcc cacggagcct gggcctctgg
      541 actgccgcga ggagcagtac ccgtgtaccc gcctctactc catacacaag ccttgtaaac
      601 agtgtctcaa cgaggtctgc ttctacagcc tccgccgtgt gtatgttatc aacaaggaaa
      661 tctgtgtccg cacggtctgt gcccacgagg agctcctgcg agctgacctg tgtcgtgaca
      721 agttctccaa atgtggcgtg atggccagca gcggcctgtg ccaatctgtg gcagcctcct
      781 gtgccaggag ctgcgggggc tgctagggtg ggactggcac cccgagcccc ggaccctcct
      841 cgatctgggg ccctcaggct ctgcctgacc tggtgctttt ctccccagcc agacgttcct
      901 tttatcccgt aaaatgttag tggctgcagc gccgggggtt gcctcaggcc cttcccccag
      961 cctgtggcca cccctggggc acaaaggggg ctccagtctc cgcccccagt tgggggacat
     1021 cccaggcctc tctacgggac ctgggcccct gatgtgcctt ctccatccct ctgaggacag
     1081 tcccccactc cagccccacc cccaaggtag gctatgaccc tcaccccagc tggtctgctt
     1141 ggatttccta cagcccctgg gcatagacca cctttgtttt atacaaaatt aaaaacaggt
     1201 ttttacaaaa gattcagagt cacttttt
//
LOCUS       XM_032612701            2188 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microfibril associated protein 2 (MFAP2),
            transcript variant X8, mRNA.
ACCESSION   XM_032612701
VERSION     XM_032612701.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2188
                     /gene="MFAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743743"
     CDS             1218..1766
                     /gene="MFAP2"
                     /codon_start=1
                     /product="microfibrillar-associated protein 2 isoform X3"
                     /protein_id="XP_032468592.1"
                     /db_xref="GeneID:116743743"
                     /translation="MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNP
                     DYYDYQEVTPRPPEEQFQFQSQQQVQQEVIPAPTLEPGTVETEPTEPGPLDCREEQYP
                     CTRLYSIHKPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCG
                     VMASSGLCQSVAASCARSCGGC"
     misc_feature    1365..1682
                     /gene="MFAP2"
                     /note="Microfibril-associated glycoprotein (MAGP); Region:
                     MAGP; pfam05507"
                     /db_xref="CDD:461667"
ORIGIN      
        1 cagggggccc ggaggaggcc ccgctagtgc ccctctcgcc agacacagag ggtagggggc
       61 gtcccagcca cggaaggggc cagggtccag gaacaggcct cctaggcagg tcctggcctc
      121 ccgacaccca aacagtctgt cgtctagatg tgcttggagg tgtggtcccc tggagggacc
      181 cgcttctgcc acagggactc tcttctttac agcccagccc tccttccccc aataagcctg
      241 ggcctgggtg ctcaacctcc gaggggagga aagactcctt tcagggggct gagaggccta
      301 ggaggggctt tggggaccca cagaaccccc cgccccccaa ccaacctccc cagctcgggg
      361 ccttctcctg agtggtgaca gctccagcta gcctgcctgc caccagcctg gggggcaata
      421 ggggacagtg aggccttgtg gggagctcca ggcctttcag tcccccacca agaggaggcc
      481 aagggtgctc agaatgggga tgtgggaacc agatgtcccc ggccggtggg gcagcttgag
      541 tcacaggtct cgcctccgcc accccacctc atccccaccc accccatcga ctgcagctag
      601 ggttgaggag ggagcgagag gctgaatgta ggagacaggc agcgggtcac gaaagcgtcg
      661 ggactgggca gaaggaggga aagatgccca tgtttctgct ccttccctcc ccctctccct
      721 cgactccctg ggcgaggcac gatggggcaa agttaggttt cctttcagct atccggaaaa
      781 actcctcttg ttgtggcagg gcgggggtcc tccggacggg tgagcccggg gactctctcc
      841 cagccctcct ggcagaaggc cgacagccct ggggctgccc cgcactgagc tgggactgga
      901 caagaggacc tgtagattct gccaagtcca ctgtggggtc aaagactgga ggctagactc
      961 aaccaggagc tcttgaactt caagagccca gtgaaaacta aggaccacgg ccctctcccc
     1021 aaaaagctac acacataaca cttgtcatac aatgtcaggt tgggggacat cacggtcccc
     1081 ttcagcgcta ccctctagga tctggagagg cgcttttcag actccaccct aagtgcttcc
     1141 tgctgcagca gacaaggaga cctcagtctc agtctcctgt cccttgacac cagtccagcc
     1201 cgcctcgttg tgtaaccatg agagctgcct acctcttcct gctgttcctg cctggcctgc
     1261 tggctcaggg ccagtacgac ctggatccgc tgcctccgtt cccagaccac gtccagtaca
     1321 cccactatag cgaccagatc gacaacccgg actactatga ttatcaagag gtgactcctc
     1381 ggcccccgga ggagcagttt cagttccagt cccagcagca agtccaacag gaagtcatcc
     1441 cagctcccac cttagaacca ggaactgtag agacggagcc cacggagcct gggcctctgg
     1501 actgccgcga ggagcagtac ccgtgtaccc gcctctactc catacacaag ccttgtaaac
     1561 agtgtctcaa cgaggtctgc ttctacagcc tccgccgtgt gtatgttatc aacaaggaaa
     1621 tctgtgtccg cacggtctgt gcccacgagg agctcctgcg agctgacctg tgtcgtgaca
     1681 agttctccaa atgtggcgtg atggccagca gcggcctgtg ccaatctgtg gcagcctcct
     1741 gtgccaggag ctgcgggggc tgctagggtg ggactggcac cccgagcccc ggaccctcct
     1801 cgatctgggg ccctcaggct ctgcctgacc tggtgctttt ctccccagcc agacgttcct
     1861 tttatcccgt aaaatgttag tggctgcagc gccgggggtt gcctcaggcc cttcccccag
     1921 cctgtggcca cccctggggc acaaaggggg ctccagtctc cgcccccagt tgggggacat
     1981 cccaggcctc tctacgggac ctgggcccct gatgtgcctt ctccatccct ctgaggacag
     2041 tcccccactc cagccccacc cccaaggtag gctatgaccc tcaccccagc tggtctgctt
     2101 ggatttccta cagcccctgg gcatagacca cctttgtttt atacaaaatt aaaaacaggt
     2161 ttttacaaaa gattcagagt cacttttt
//
LOCUS       XM_032612715            1382 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat containing 52
            (LRRC52), mRNA.
ACCESSION   XM_032612715
VERSION     XM_032612715.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1382
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1382
                     /gene="LRRC52"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins"
                     /db_xref="GeneID:116743769"
     CDS             303..1250
                     /gene="LRRC52"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 52"
                     /protein_id="XP_032468606.1"
                     /db_xref="GeneID:116743769"
                     /translation="MSRASGPGPGWLLFSFGMGLVSGSRCPNNCQCQAQEVICTGAQL
                     TEYPSDIPLNTRRLYLNDNSIRFLPAMNLGLLSDLVYLDCQKNLIQEVMDYTFVGVFK
                     LIYLDLSFNNLTLISPYSFSMLSNLVQLNISSNPHLLSLNKYTFANTSSLRYLDLRNT
                     GLQTLDHAAFHNLITLQTLYLSGNPWKCNCSFLDFTIYLIMSPLNHPDEQNATCLEPT
                     ELAGWPITKVGNPLRYMCVTHLDHQDYIFLLLIGFCIFSAGTVAAWLTGVCAVLYQNA
                     RRRSSEDEAEDELGQSVEASRRIFQSRVESGQDGFPQLI"
     misc_feature    <405..>854
                     /gene="LRRC52"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    468..536
                     /gene="LRRC52"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    537..608
                     /gene="LRRC52"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    609..680
                     /gene="LRRC52"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    681..755
                     /gene="LRRC52"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    756..827
                     /gene="LRRC52"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    768..>986
                     /gene="LRRC52"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
ORIGIN      
        1 ccccttcact tgcgaacgca gggaaagagt gagacctttt aaagccgcca agccggcagg
       61 cttccagcag cagtctggga gtgagcaatc agcagagcca ccaagccggg cggcagggca
      121 ttgggcctcg cgtttcaact tctgttcagt tctcctgtaa tggaaaatcg cttcgcccaa
      181 agccagtgtt acagttcttt ccagcgcccc tccccccgcc ccaccacgcc cctcggcagc
      241 ctcccgatca gagggacagc gcccgctgga aagtggaagg agggtagtcg ccgcttctta
      301 ctatgtcccg tgcttcaggc cctgggcccg ggtggttact cttttccttc ggaatgggac
      361 tggtatcggg gtcaaggtgt ccaaataatt gtcagtgtca agcccaagaa gtgatctgca
      421 caggggccca gttaactgaa tacccctctg acatacccct gaacacccgg aggctctacc
      481 tgaatgataa cagcatccgc tttttgccag cgatgaatct aggactcctc agtgaccttg
      541 tttacttgga ctgtcagaag aacttgattc aggaggtgat ggattatacc ttcgtcgggg
      601 tcttcaaact catctacctc gatctcagct tcaacaattt aaccttgatc tccccataca
      661 gtttctccat gctcagcaat ctggtgcagc tgaacatctc cagcaaccct catctgttat
      721 ccctcaacaa gtacaccttt gccaacacca gctctttgag gtacctggac ctcagaaata
      781 ccggcttgca gaccttggac catgctgcct tccataacct cataacactc cagaccctgt
      841 atctgagtgg aaacccctgg aaatgcaact gctctttcct ggacttcacc atctacttaa
      901 taatgtcccc tctgaaccat ccagatgaac aaaatgccac gtgcctggag cccacagaac
      961 tggcagggtg gcccatcacg aaggtgggga acccgctccg gtacatgtgc gtcacgcacc
     1021 tggaccacca agactacatc ttcctgctgc tcatcggctt ttgcatcttc tccgcgggca
     1081 ccgtggccgc ctggctgacg ggcgtgtgcg ccgtgctcta ccagaatgcc cgccgcagat
     1141 cgagcgagga tgaggcagag gacgagctcg ggcagagtgt agaagccagc aggaggattt
     1201 ttcaaagcag ggtggagtct ggccaggacg ggtttcctca gctgatttag ttgccaggcg
     1261 ttgctgtctg atggactttt cccaggctcc ctgctttctg tcttgccctc ccctccccac
     1321 tcctcaaagc tgtcttagag gttgaagcct actagtaaaa taaataaaac atttggtggc
     1381 ca
//
LOCUS       XR_004346877            1396 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743775
            (LOC116743775), ncRNA.
ACCESSION   XR_004346877
VERSION     XR_004346877.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1396
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1396
                     /gene="LOC116743775"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743775"
     ncRNA           1..1396
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743775"
                     /product="uncharacterized LOC116743775"
                     /db_xref="GeneID:116743775"
ORIGIN      
        1 gcaggctcag tggccatggc tcacaggccc agccgctctg cagcatgtgg gatcttcccg
       61 gaccgggcca cgaacctgtg tctcctgtat cggcaggcgg actctcaacc attgcgccac
      121 aagggaaatc cgcaaagaga tttttatacc gactctgctg actaatattt cgtttgtgaa
      181 gccaggagcc tccataaagg ttaaaaatta ttcagctata ttgtgttgaa cttgattgaa
      241 gtgtcatgaa cagtgtctgg agagcagaag aaccagttct ctcttgttgc aatgggttta
      301 gtctgtttac tttcctggtg ccctgtcgct gaagctgggg ctgggaggcc tggtgaggaa
      361 tgtttcttct ggagctctga caggctcagc tatttgtcac agcctctgaa gctgcttggc
      421 tacagatgag gaaaatgagg ctcagagagg ttgagccact tccctcagga cacgcagtga
      481 agtatgaagt aaagatttga accggagcag tctgactcca gatcctgtac tcataatcat
      541 ggaaagtgtt gcctccaaat acccagcact gtggctatgg gacctaatga acatgttcat
      601 tcgttcgtgc tcctggccat actccacgtc tgcttgttcc ctacagctga ccggactcag
      661 ctgagattga tgaggaagag tggctgtacc ttacagcagc cctggattga gaatagcctc
      721 tcatttacca gccatctggt ccctccaagt ctctcctgct ggtggtgtct ccaaatatct
      781 tcccagagag aggacagaat ctccaacaaa atctatgaga ggattggttc aagatggcgg
      841 agtagaaggc tgtgcattca ctccttgcga gagcactgaa atcacaacta actgctgaac
      901 aatcattgac aggaagacac tggaattcac caaaacagta ccccacatcc aaagacaaag
      961 gagaagatgc aatgagatgg cccacacaaa gtgctataag aattcagagg acagagagaa
     1021 catttctggc agtggacaga gtcctgagtg agcacagagg ctttatggaa tctggacatg
     1081 agcctaccca ttggcccaaa tacctgctca accataaaga gcaacgttct cccaggacca
     1141 agaagacaac tccttaaaag gttttaatga gtgtccagat tttcttagag cccttgcctt
     1201 ggaactgccc actgcaagag tatgaagtct ggggagcagg ctcagggtcc aggcggagcc
     1261 aggaggatgg cagtggctct agatatgatg tctgagtgtg aattcccatt taggatttct
     1321 ctaagcacaa gagtcatggc tctgtggcag ggtgtcctac acctgtgaat aaatcaggga
     1381 tggaaaagag gaattt
//
LOCUS       XR_004346878             392 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743781
            (LOC116743781), ncRNA.
ACCESSION   XR_004346878
VERSION     XR_004346878.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..392
                     /gene="LOC116743781"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116743781"
     ncRNA           1..392
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743781"
                     /product="uncharacterized LOC116743781"
                     /db_xref="GeneID:116743781"
ORIGIN      
        1 cccagccgct cagcggcaag tgggatcttc gcggaacggg gcatgaaccc gtgtcccctt
       61 catcggcagg cggactctca accactgcgc caccagggaa gcccgagaat taacaatatt
      121 tgtctacaga gacagagtgt catccctttg gatgtgtggg ttgaaggccc aggaagtcta
      181 taccttcaac tactcttcct tttgctgtct atctcagatc agacaagcag acaatggaag
      241 aaagaagcaa aagaaaatcc ttcggaacct ctggatcatg atgctttaag aagttcacag
      301 agattgttgc ttgcccaagc tcccagagga aaggctgtga gtgtggttaa tggcctgcct
      361 cgtggcttca gcatcctata gtcaagtctg ag
//
LOCUS       XM_032612744            3214 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus monocarboxylate transporter 1-like
            (LOC116743783), transcript variant X1, mRNA.
ACCESSION   XM_032612744
VERSION     XM_032612744.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3214
                     /gene="LOC116743783"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 33 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743783"
     CDS             235..1716
                     /gene="LOC116743783"
                     /codon_start=1
                     /product="monocarboxylate transporter 1-like isoform X1"
                     /protein_id="XP_032468635.1"
                     /db_xref="GeneID:116743783"
                     /translation="MPSSNGGPVGYTPPDGGWGWAVVVGAFISIGFSCAFGKSITVFY
                     KEIEEIFKASTSEVSWLSSIAFAVMYGGGPISSILVNKYGSRPVMIVGGCLSGCGLIS
                     ASFCTTVQELYLCVGVIAGLGLAFNLNPSLTMIGRYFYKRRPLANGLAMAGSPVFLSA
                     LAPLNQALFAVFGWRGSFLILGGILLNCCVAGALMRPIGPKPTTAGKEKSKESLQEAG
                     KCDANKGAGDANTEVNGRNPPKEKQSVFQTVNKLLDLSLFKHRGFMLYLSGNVIMSFA
                     LATPLVFLSNYAKSQHHTSEKSAFLLSILAFVDMVARPSMGFVANTKWIRPRIQYFLA
                     ASIIANGVCHMLVPLSSSYIGFCLYAGFLGFAFGWFGAVLFETLMDLVGSQRFSSAVG
                     LVTIVECCPILLGPPILGRLSDIYGDYKYTYWTCGIILIVSGIYLCIGMGIHYQLEAK
                     EQKAEAKQNKESKEMEPKEVIKAAESPELKGTEAGPKEEKLSG"
     misc_feature    235..1659
                     /gene="LOC116743783"
                     /note="monocarboxylate transporter 1; Region: 2A0113;
                     TIGR00892"
                     /db_xref="CDD:273325"
ORIGIN      
        1 cgcccacccc tccccacagt gtctggcgaa ctcccggggc gtgggggtcg ctaggcgcgg
       61 agaggagcta cgtcccgagc cgccccgtca catcacgctc acgcggcgcc gcgacccgcg
      121 cacaaagtat atatgctgct gaagcaagca ttgggatgaa aactttaaga atgatgagta
      181 aagcatagag atatttggat ttgaactgca ttttagaatt catctttact tacaatgcca
      241 tcatcaaacg gaggtccagt tggatacacg cccccagatg gaggctgggg gtgggcagtt
      301 gttgttggag ctttcatttc cattggcttc tcttgtgctt ttggcaaatc tattactgta
      361 ttttacaaag aaattgagga aatatttaaa gccagcacca gcgaagtgtc atggttatct
      421 tccatcgcgt ttgctgtcat gtatggtgga ggtcctatca gcagtatcct ggtgaataaa
      481 tatggcagtc gtccagttat gattgttggc ggctgcttgt ccggctgtgg cttgatttcg
      541 gcttctttct gtaccactgt gcaggaactt tacttgtgtg tcggagtcat tgcaggtctt
      601 gggcttgcct tcaacttgaa tccatctctg accatgattg gcaggtattt ctacaagagg
      661 cgaccattag caaatggact ggccatggca ggcagccctg tgttcctctc cgccctggcc
      721 cccctcaacc aggctctttt tgctgtcttt ggctggagag gaagcttcct aattcttgga
      781 ggcatcctac taaactgctg tgtggctgga gccctgatga gaccaatagg gcccaagcca
      841 acaactgcag ggaaagagaa gtctaaagaa tcccttcagg aagctggaaa atgtgatgca
      901 aacaaggggg caggtgatgc aaatacagaa gttaatggca gaaacccccc aaaggagaaa
      961 caatccgttt tccaaacagt taacaaactt ctggacttat ccctattcaa acacagaggc
     1021 tttatgctgt acctctctgg gaatgtgata atgtcttttg cgctggctac acctttagtc
     1081 tttcttagta attatgccaa gagtcaacat cacactagtg agaagtctgc cttccttctt
     1141 tccattctgg cttttgttga catggtagcc agaccttcta tgggatttgt agccaacaca
     1201 aagtggataa gacctcgaat tcagtatttt ttagctgctt ccattattgc aaatggagtg
     1261 tgtcatatgc tagtaccctt atcctctagc tatatagggt tctgtcttta tgcgggattc
     1321 cttggatttg cttttgggtg gtttggcgcc gtattgtttg aaacgctgat ggacctggtt
     1381 ggatcccaga ggttctccag tgccgtggga ttggtgacca ttgtggaatg ctgtcctatt
     1441 ctcctggggc caccgatttt aggtcgtctc agtgacatat acggagacta caaatataca
     1501 tactggacat gcggcataat ccttattgtc tcaggcatct atctctgcat tggcatgggc
     1561 atccattatc aacttgaggc aaaagaacag aaggcagagg cgaagcagaa taaggaaagt
     1621 aaagagatgg aaccaaaaga agttattaaa gctgcagaat ctccagaact gaaaggcaca
     1681 gaagcaggac cgaaagagga gaaactttca ggctgaagtc agagataaac agaagctttg
     1741 gagcaaagat acttgaaaaa ttctaccgaa tcatgttcta ctcttggtgc taacagtgga
     1801 tagtggacat ttgtgtggaa gtcataccag gtgttccttg atagaacttt tatttccttc
     1861 ctttacaaca gccataataa atatgtcacg tcctttaggg gcaggggatt tgcaaaaggt
     1921 gacagaagga aaaagcttct atttgaagtc atatttatta aggtatacct taaatactgt
     1981 acaaatccct tttataagag taaagtttaa tgaattttga cacaggtatt ttgtcaaata
     2041 actaccacac taatatagaa tatttcaaac agccaaaata attcccttct gctcctttgc
     2101 agttaatccc ctccccttaa ctatagcccc tggcagccac tgctctgatt tctgtcccct
     2161 atagttttgt cttttccaga atggaacaaa tggaatcaca tagtatgtaa ctattggcac
     2221 aatagtgtat atatatatgg tctttatcct cagttcctgg tatacagctc ctagaagcct
     2281 tggaatctct gcagtgataa gagtatcttt tgcatgctaa ttaggtgact ggtggctgga
     2341 gacccctttc ttaacttcag gataggggct agtctccaaa aaggccaaag catgattgga
     2401 gggttggaac tttcagcccc atcctctgac ctctgagaag gggagagggg ctggaagttg
     2461 ggttcaatta ttaatgtcca gtgatataat caatcatgcc tatgtaataa aaccccctaa
     2521 actacagaga gcttcctggc tggtgaatac tttgaggtac tgggagagta gtgtgtccag
     2581 agagggcatg gaagctccct acctcccctc cccaccatat tttaccctat gcatctcttc
     2641 catctggctg ttctgaattg tatcctttat aataaatcag tgaacgtaag caaagtgttt
     2701 cttgagttct gtgatccatt ctagtaaatt atcaaacttg atgaaggagt catgggaact
     2761 cccaatttac agctgattgg tcacaagtac aggtggcaac ccgggacttg agactggaat
     2821 ctgaagtgag ggcagtcttg tgagactaag cctttaaatc tgtggaatct gacactaact
     2881 cggagtactt tatgtcagaa ttgaattgaa ctgtaggaca cccagtcggt gtctggagag
     2941 ttggcgcaat ggttgttggt atggaaataa cccacacatt tggtgtcaga agcgttgtga
     3001 gtaaaagcag ttgggagtag ccttttgtgt ctggcttctt tcacaatagc ataatgtttt
     3061 atggttcatc catgtggttg tatttttcag tagttcattg ctttttattg ctgagcagta
     3121 tttctttgta tagatgtacc ataatttgta tatccatcca ccagttggac atttgagctt
     3181 tgttctaagt aaagatgcta taaacattca cata
//
LOCUS       XM_032612755            3157 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus monocarboxylate transporter 1-like
            (LOC116743783), transcript variant X2, mRNA.
ACCESSION   XM_032612755
VERSION     XM_032612755.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3157
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3157
                     /gene="LOC116743783"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 33 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743783"
     CDS             178..1659
                     /gene="LOC116743783"
                     /codon_start=1
                     /product="monocarboxylate transporter 1-like isoform X1"
                     /protein_id="XP_032468646.1"
                     /db_xref="GeneID:116743783"
                     /translation="MPSSNGGPVGYTPPDGGWGWAVVVGAFISIGFSCAFGKSITVFY
                     KEIEEIFKASTSEVSWLSSIAFAVMYGGGPISSILVNKYGSRPVMIVGGCLSGCGLIS
                     ASFCTTVQELYLCVGVIAGLGLAFNLNPSLTMIGRYFYKRRPLANGLAMAGSPVFLSA
                     LAPLNQALFAVFGWRGSFLILGGILLNCCVAGALMRPIGPKPTTAGKEKSKESLQEAG
                     KCDANKGAGDANTEVNGRNPPKEKQSVFQTVNKLLDLSLFKHRGFMLYLSGNVIMSFA
                     LATPLVFLSNYAKSQHHTSEKSAFLLSILAFVDMVARPSMGFVANTKWIRPRIQYFLA
                     ASIIANGVCHMLVPLSSSYIGFCLYAGFLGFAFGWFGAVLFETLMDLVGSQRFSSAVG
                     LVTIVECCPILLGPPILGRLSDIYGDYKYTYWTCGIILIVSGIYLCIGMGIHYQLEAK
                     EQKAEAKQNKESKEMEPKEVIKAAESPELKGTEAGPKEEKLSG"
     misc_feature    178..1602
                     /gene="LOC116743783"
                     /note="monocarboxylate transporter 1; Region: 2A0113;
                     TIGR00892"
                     /db_xref="CDD:273325"
ORIGIN      
        1 cggcggcgcc cacccctccc cacagtgtct ggcgaactcc cggggcgtgg gggtcgctag
       61 gcgcggagag gagctacgtc ccgagccgcc ccgtcacatc acgctcacgc ggcgccgcga
      121 cccgcgcaca aagatatttg gatttgaact gcattttaga attcatcttt acttacaatg
      181 ccatcatcaa acggaggtcc agttggatac acgcccccag atggaggctg ggggtgggca
      241 gttgttgttg gagctttcat ttccattggc ttctcttgtg cttttggcaa atctattact
      301 gtattttaca aagaaattga ggaaatattt aaagccagca ccagcgaagt gtcatggtta
      361 tcttccatcg cgtttgctgt catgtatggt ggaggtccta tcagcagtat cctggtgaat
      421 aaatatggca gtcgtccagt tatgattgtt ggcggctgct tgtccggctg tggcttgatt
      481 tcggcttctt tctgtaccac tgtgcaggaa ctttacttgt gtgtcggagt cattgcaggt
      541 cttgggcttg ccttcaactt gaatccatct ctgaccatga ttggcaggta tttctacaag
      601 aggcgaccat tagcaaatgg actggccatg gcaggcagcc ctgtgttcct ctccgccctg
      661 gcccccctca accaggctct ttttgctgtc tttggctgga gaggaagctt cctaattctt
      721 ggaggcatcc tactaaactg ctgtgtggct ggagccctga tgagaccaat agggcccaag
      781 ccaacaactg cagggaaaga gaagtctaaa gaatcccttc aggaagctgg aaaatgtgat
      841 gcaaacaagg gggcaggtga tgcaaataca gaagttaatg gcagaaaccc cccaaaggag
      901 aaacaatccg ttttccaaac agttaacaaa cttctggact tatccctatt caaacacaga
      961 ggctttatgc tgtacctctc tgggaatgtg ataatgtctt ttgcgctggc tacaccttta
     1021 gtctttctta gtaattatgc caagagtcaa catcacacta gtgagaagtc tgccttcctt
     1081 ctttccattc tggcttttgt tgacatggta gccagacctt ctatgggatt tgtagccaac
     1141 acaaagtgga taagacctcg aattcagtat tttttagctg cttccattat tgcaaatgga
     1201 gtgtgtcata tgctagtacc cttatcctct agctatatag ggttctgtct ttatgcggga
     1261 ttccttggat ttgcttttgg gtggtttggc gccgtattgt ttgaaacgct gatggacctg
     1321 gttggatccc agaggttctc cagtgccgtg ggattggtga ccattgtgga atgctgtcct
     1381 attctcctgg ggccaccgat tttaggtcgt ctcagtgaca tatacggaga ctacaaatat
     1441 acatactgga catgcggcat aatccttatt gtctcaggca tctatctctg cattggcatg
     1501 ggcatccatt atcaacttga ggcaaaagaa cagaaggcag aggcgaagca gaataaggaa
     1561 agtaaagaga tggaaccaaa agaagttatt aaagctgcag aatctccaga actgaaaggc
     1621 acagaagcag gaccgaaaga ggagaaactt tcaggctgaa gtcagagata aacagaagct
     1681 ttggagcaaa gatacttgaa aaattctacc gaatcatgtt ctactcttgg tgctaacagt
     1741 ggatagtgga catttgtgtg gaagtcatac caggtgttcc ttgatagaac ttttatttcc
     1801 ttcctttaca acagccataa taaatatgtc acgtccttta ggggcagggg atttgcaaaa
     1861 ggtgacagaa ggaaaaagct tctatttgaa gtcatattta ttaaggtata ccttaaatac
     1921 tgtacaaatc ccttttataa gagtaaagtt taatgaattt tgacacaggt attttgtcaa
     1981 ataactacca cactaatata gaatatttca aacagccaaa ataattccct tctgctcctt
     2041 tgcagttaat cccctcccct taactatagc ccctggcagc cactgctctg atttctgtcc
     2101 cctatagttt tgtcttttcc agaatggaac aaatggaatc acatagtatg taactattgg
     2161 cacaatagtg tatatatata tggtctttat cctcagttcc tggtatacag ctcctagaag
     2221 ccttggaatc tctgcagtga taagagtatc ttttgcatgc taattaggtg actggtggct
     2281 ggagacccct ttcttaactt caggataggg gctagtctcc aaaaaggcca aagcatgatt
     2341 ggagggttgg aactttcagc cccatcctct gacctctgag aaggggagag gggctggaag
     2401 ttgggttcaa ttattaatgt ccagtgatat aatcaatcat gcctatgtaa taaaaccccc
     2461 taaactacag agagcttcct ggctggtgaa tactttgagg tactgggaga gtagtgtgtc
     2521 cagagagggc atggaagctc cctacctccc ctccccacca tattttaccc tatgcatctc
     2581 ttccatctgg ctgttctgaa ttgtatcctt tataataaat cagtgaacgt aagcaaagtg
     2641 tttcttgagt tctgtgatcc attctagtaa attatcaaac ttgatgaagg agtcatggga
     2701 actcccaatt tacagctgat tggtcacaag tacaggtggc aacccgggac ttgagactgg
     2761 aatctgaagt gagggcagtc ttgtgagact aagcctttaa atctgtggaa tctgacacta
     2821 actcggagta ctttatgtca gaattgaatt gaactgtagg acacccagtc ggtgtctgga
     2881 gagttggcgc aatggttgtt ggtatggaaa taacccacac atttggtgtc agaagcgttg
     2941 tgagtaaaag cagttgggag tagccttttg tgtctggctt ctttcacaat agcataatgt
     3001 tttatggttc atccatgtgg ttgtattttt cagtagttca ttgcttttta ttgctgagca
     3061 gtatttcttt gtatagatgt accataattt gtatatccat ccaccagttg gacatttgag
     3121 ctttgttcta agtaaagatg ctataaacat tcacata
//
LOCUS       XM_032612765            3161 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus monocarboxylate transporter 1-like
            (LOC116743783), transcript variant X3, mRNA.
ACCESSION   XM_032612765
VERSION     XM_032612765.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3161
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3161
                     /gene="LOC116743783"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 33 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743783"
     CDS             182..1663
                     /gene="LOC116743783"
                     /codon_start=1
                     /product="monocarboxylate transporter 1-like isoform X1"
                     /protein_id="XP_032468656.1"
                     /db_xref="GeneID:116743783"
                     /translation="MPSSNGGPVGYTPPDGGWGWAVVVGAFISIGFSCAFGKSITVFY
                     KEIEEIFKASTSEVSWLSSIAFAVMYGGGPISSILVNKYGSRPVMIVGGCLSGCGLIS
                     ASFCTTVQELYLCVGVIAGLGLAFNLNPSLTMIGRYFYKRRPLANGLAMAGSPVFLSA
                     LAPLNQALFAVFGWRGSFLILGGILLNCCVAGALMRPIGPKPTTAGKEKSKESLQEAG
                     KCDANKGAGDANTEVNGRNPPKEKQSVFQTVNKLLDLSLFKHRGFMLYLSGNVIMSFA
                     LATPLVFLSNYAKSQHHTSEKSAFLLSILAFVDMVARPSMGFVANTKWIRPRIQYFLA
                     ASIIANGVCHMLVPLSSSYIGFCLYAGFLGFAFGWFGAVLFETLMDLVGSQRFSSAVG
                     LVTIVECCPILLGPPILGRLSDIYGDYKYTYWTCGIILIVSGIYLCIGMGIHYQLEAK
                     EQKAEAKQNKESKEMEPKEVIKAAESPELKGTEAGPKEEKLSG"
     misc_feature    182..1606
                     /gene="LOC116743783"
                     /note="monocarboxylate transporter 1; Region: 2A0113;
                     TIGR00892"
                     /db_xref="CDD:273325"
ORIGIN      
        1 ctcccggggc gtgggggtcg ctaggcgcgg agaggagcta cgtcccgagc cgccccgtca
       61 catcacgctc acgcggcgcc gcgacccgcg cacaaaggtc accacggagc actgagtaga
      121 gttccctgag ctatacaata tttggatttg aactgcattt tagaattcat ctttacttac
      181 aatgccatca tcaaacggag gtccagttgg atacacgccc ccagatggag gctgggggtg
      241 ggcagttgtt gttggagctt tcatttccat tggcttctct tgtgcttttg gcaaatctat
      301 tactgtattt tacaaagaaa ttgaggaaat atttaaagcc agcaccagcg aagtgtcatg
      361 gttatcttcc atcgcgtttg ctgtcatgta tggtggaggt cctatcagca gtatcctggt
      421 gaataaatat ggcagtcgtc cagttatgat tgttggcggc tgcttgtccg gctgtggctt
      481 gatttcggct tctttctgta ccactgtgca ggaactttac ttgtgtgtcg gagtcattgc
      541 aggtcttggg cttgccttca acttgaatcc atctctgacc atgattggca ggtatttcta
      601 caagaggcga ccattagcaa atggactggc catggcaggc agccctgtgt tcctctccgc
      661 cctggccccc ctcaaccagg ctctttttgc tgtctttggc tggagaggaa gcttcctaat
      721 tcttggaggc atcctactaa actgctgtgt ggctggagcc ctgatgagac caatagggcc
      781 caagccaaca actgcaggga aagagaagtc taaagaatcc cttcaggaag ctggaaaatg
      841 tgatgcaaac aagggggcag gtgatgcaaa tacagaagtt aatggcagaa accccccaaa
      901 ggagaaacaa tccgttttcc aaacagttaa caaacttctg gacttatccc tattcaaaca
      961 cagaggcttt atgctgtacc tctctgggaa tgtgataatg tcttttgcgc tggctacacc
     1021 tttagtcttt cttagtaatt atgccaagag tcaacatcac actagtgaga agtctgcctt
     1081 ccttctttcc attctggctt ttgttgacat ggtagccaga ccttctatgg gatttgtagc
     1141 caacacaaag tggataagac ctcgaattca gtatttttta gctgcttcca ttattgcaaa
     1201 tggagtgtgt catatgctag tacccttatc ctctagctat atagggttct gtctttatgc
     1261 gggattcctt ggatttgctt ttgggtggtt tggcgccgta ttgtttgaaa cgctgatgga
     1321 cctggttgga tcccagaggt tctccagtgc cgtgggattg gtgaccattg tggaatgctg
     1381 tcctattctc ctggggccac cgattttagg tcgtctcagt gacatatacg gagactacaa
     1441 atatacatac tggacatgcg gcataatcct tattgtctca ggcatctatc tctgcattgg
     1501 catgggcatc cattatcaac ttgaggcaaa agaacagaag gcagaggcga agcagaataa
     1561 ggaaagtaaa gagatggaac caaaagaagt tattaaagct gcagaatctc cagaactgaa
     1621 aggcacagaa gcaggaccga aagaggagaa actttcaggc tgaagtcaga gataaacaga
     1681 agctttggag caaagatact tgaaaaattc taccgaatca tgttctactc ttggtgctaa
     1741 cagtggatag tggacatttg tgtggaagtc ataccaggtg ttccttgata gaacttttat
     1801 ttccttcctt tacaacagcc ataataaata tgtcacgtcc tttaggggca ggggatttgc
     1861 aaaaggtgac agaaggaaaa agcttctatt tgaagtcata tttattaagg tataccttaa
     1921 atactgtaca aatccctttt ataagagtaa agtttaatga attttgacac aggtattttg
     1981 tcaaataact accacactaa tatagaatat ttcaaacagc caaaataatt cccttctgct
     2041 cctttgcagt taatcccctc cccttaacta tagcccctgg cagccactgc tctgatttct
     2101 gtcccctata gttttgtctt ttccagaatg gaacaaatgg aatcacatag tatgtaacta
     2161 ttggcacaat agtgtatata tatatggtct ttatcctcag ttcctggtat acagctccta
     2221 gaagccttgg aatctctgca gtgataagag tatcttttgc atgctaatta ggtgactggt
     2281 ggctggagac ccctttctta acttcaggat aggggctagt ctccaaaaag gccaaagcat
     2341 gattggaggg ttggaacttt cagccccatc ctctgacctc tgagaagggg agaggggctg
     2401 gaagttgggt tcaattatta atgtccagtg atataatcaa tcatgcctat gtaataaaac
     2461 cccctaaact acagagagct tcctggctgg tgaatacttt gaggtactgg gagagtagtg
     2521 tgtccagaga gggcatggaa gctccctacc tcccctcccc accatatttt accctatgca
     2581 tctcttccat ctggctgttc tgaattgtat cctttataat aaatcagtga acgtaagcaa
     2641 agtgtttctt gagttctgtg atccattcta gtaaattatc aaacttgatg aaggagtcat
     2701 gggaactccc aatttacagc tgattggtca caagtacagg tggcaacccg ggacttgaga
     2761 ctggaatctg aagtgagggc agtcttgtga gactaagcct ttaaatctgt ggaatctgac
     2821 actaactcgg agtactttat gtcagaattg aattgaactg taggacaccc agtcggtgtc
     2881 tggagagttg gcgcaatggt tgttggtatg gaaataaccc acacatttgg tgtcagaagc
     2941 gttgtgagta aaagcagttg ggagtagcct tttgtgtctg gcttctttca caatagcata
     3001 atgttttatg gttcatccat gtggttgtat ttttcagtag ttcattgctt tttattgctg
     3061 agcagtattt ctttgtatag atgtaccata atttgtatat ccatccacca gttggacatt
     3121 tgagctttgt tctaagtaaa gatgctataa acattcacat a
//
LOCUS       XM_032612774            3231 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus monocarboxylate transporter 1-like
            (LOC116743783), transcript variant X4, mRNA.
ACCESSION   XM_032612774
VERSION     XM_032612774.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3231
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3231
                     /gene="LOC116743783"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 10 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743783"
     CDS             402..1733
                     /gene="LOC116743783"
                     /codon_start=1
                     /product="monocarboxylate transporter 1-like isoform X2"
                     /protein_id="XP_032468665.1"
                     /db_xref="GeneID:116743783"
                     /translation="MVIFHRVCCHVWWSIMLKKSGDGPISSILVNKYGSRPVMIVGGC
                     LSGCGLISASFCTTVQELYLCVGVIAGLGLAFNLNPSLTMIGRYFYKRRPLANGLAMA
                     GSPVFLSALAPLNQALFAVFGWRGSFLILGGILLNCCVAGALMRPIGPKPTTAGKEKS
                     KESLQEAGKCDANKGAGDANTEVNGRNPPKEKQSVFQTVNKLLDLSLFKHRGFMLYLS
                     GNVIMSFALATPLVFLSNYAKSQHHTSEKSAFLLSILAFVDMVARPSMGFVANTKWIR
                     PRIQYFLAASIIANGVCHMLVPLSSSYIGFCLYAGFLGFAFGWFGAVLFETLMDLVGS
                     QRFSSAVGLVTIVECCPILLGPPILGRLSDIYGDYKYTYWTCGIILIVSGIYLCIGMG
                     IHYQLEAKEQKAEAKQNKESKEMEPKEVIKAAESPELKGTEAGPKEEKLSG"
     misc_feature    402..1676
                     /gene="LOC116743783"
                     /note="monocarboxylate transporter 1; Region: 2A0113;
                     TIGR00892"
                     /db_xref="CDD:273325"
ORIGIN      
        1 actccgcccc ctgcgtgcat gctccggccc ccgcggcgtg gtataaggcg gcggcgccca
       61 cccctcccca cagtgtctgg cgaactcccg gggcgtgggg gtcgctaggc gcggagagga
      121 gctacgtccc gagccgcccc gtcacatcac gctcacgcgg cgccgcgacc cgcgcacaaa
      181 gatatttgga tttgaactgc attttagaat tcatctttac ttacaatgcc atcatcaaac
      241 ggaggtccag ttggatacac gcccccagat ggaggctggg ggtgggcagt tgttgttgga
      301 gctttcattt ccattggctt ctcttgtgct tttggcaaat ctattactgt attttacaaa
      361 gaaattgagg aaatatttaa agccagcacc agcgaagtgt catggttatc ttccatcgcg
      421 tttgctgtca tgtatggtgg agtataatgt tgaagaaaag tggtgatggt cctatcagca
      481 gtatcctggt gaataaatat ggcagtcgtc cagttatgat tgttggcggc tgcttgtccg
      541 gctgtggctt gatttcggct tctttctgta ccactgtgca ggaactttac ttgtgtgtcg
      601 gagtcattgc aggtcttggg cttgccttca acttgaatcc atctctgacc atgattggca
      661 ggtatttcta caagaggcga ccattagcaa atggactggc catggcaggc agccctgtgt
      721 tcctctccgc cctggccccc ctcaaccagg ctctttttgc tgtctttggc tggagaggaa
      781 gcttcctaat tcttggaggc atcctactaa actgctgtgt ggctggagcc ctgatgagac
      841 caatagggcc caagccaaca actgcaggga aagagaagtc taaagaatcc cttcaggaag
      901 ctggaaaatg tgatgcaaac aagggggcag gtgatgcaaa tacagaagtt aatggcagaa
      961 accccccaaa ggagaaacaa tccgttttcc aaacagttaa caaacttctg gacttatccc
     1021 tattcaaaca cagaggcttt atgctgtacc tctctgggaa tgtgataatg tcttttgcgc
     1081 tggctacacc tttagtcttt cttagtaatt atgccaagag tcaacatcac actagtgaga
     1141 agtctgcctt ccttctttcc attctggctt ttgttgacat ggtagccaga ccttctatgg
     1201 gatttgtagc caacacaaag tggataagac ctcgaattca gtatttttta gctgcttcca
     1261 ttattgcaaa tggagtgtgt catatgctag tacccttatc ctctagctat atagggttct
     1321 gtctttatgc gggattcctt ggatttgctt ttgggtggtt tggcgccgta ttgtttgaaa
     1381 cgctgatgga cctggttgga tcccagaggt tctccagtgc cgtgggattg gtgaccattg
     1441 tggaatgctg tcctattctc ctggggccac cgattttagg tcgtctcagt gacatatacg
     1501 gagactacaa atatacatac tggacatgcg gcataatcct tattgtctca ggcatctatc
     1561 tctgcattgg catgggcatc cattatcaac ttgaggcaaa agaacagaag gcagaggcga
     1621 agcagaataa ggaaagtaaa gagatggaac caaaagaagt tattaaagct gcagaatctc
     1681 cagaactgaa aggcacagaa gcaggaccga aagaggagaa actttcaggc tgaagtcaga
     1741 gataaacaga agctttggag caaagatact tgaaaaattc taccgaatca tgttctactc
     1801 ttggtgctaa cagtggatag tggacatttg tgtggaagtc ataccaggtg ttccttgata
     1861 gaacttttat ttccttcctt tacaacagcc ataataaata tgtcacgtcc tttaggggca
     1921 ggggatttgc aaaaggtgac agaaggaaaa agcttctatt tgaagtcata tttattaagg
     1981 tataccttaa atactgtaca aatccctttt ataagagtaa agtttaatga attttgacac
     2041 aggtattttg tcaaataact accacactaa tatagaatat ttcaaacagc caaaataatt
     2101 cccttctgct cctttgcagt taatcccctc cccttaacta tagcccctgg cagccactgc
     2161 tctgatttct gtcccctata gttttgtctt ttccagaatg gaacaaatgg aatcacatag
     2221 tatgtaacta ttggcacaat agtgtatata tatatggtct ttatcctcag ttcctggtat
     2281 acagctccta gaagccttgg aatctctgca gtgataagag tatcttttgc atgctaatta
     2341 ggtgactggt ggctggagac ccctttctta acttcaggat aggggctagt ctccaaaaag
     2401 gccaaagcat gattggaggg ttggaacttt cagccccatc ctctgacctc tgagaagggg
     2461 agaggggctg gaagttgggt tcaattatta atgtccagtg atataatcaa tcatgcctat
     2521 gtaataaaac cccctaaact acagagagct tcctggctgg tgaatacttt gaggtactgg
     2581 gagagtagtg tgtccagaga gggcatggaa gctccctacc tcccctcccc accatatttt
     2641 accctatgca tctcttccat ctggctgttc tgaattgtat cctttataat aaatcagtga
     2701 acgtaagcaa agtgtttctt gagttctgtg atccattcta gtaaattatc aaacttgatg
     2761 aaggagtcat gggaactccc aatttacagc tgattggtca caagtacagg tggcaacccg
     2821 ggacttgaga ctggaatctg aagtgagggc agtcttgtga gactaagcct ttaaatctgt
     2881 ggaatctgac actaactcgg agtactttat gtcagaattg aattgaactg taggacaccc
     2941 agtcggtgtc tggagagttg gcgcaatggt tgttggtatg gaaataaccc acacatttgg
     3001 tgtcagaagc gttgtgagta aaagcagttg ggagtagcct tttgtgtctg gcttctttca
     3061 caatagcata atgttttatg gttcatccat gtggttgtat ttttcagtag ttcattgctt
     3121 tttattgctg agcagtattt ctttgtatag atgtaccata atttgtatat ccatccacca
     3181 gttggacatt tgagctttgt tctaagtaaa gatgctataa acattcacat a
//
LOCUS       XM_032612788            8235 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heterogeneous nuclear ribonucleoprotein U
            (HNRNPU), transcript variant X1, mRNA.
ACCESSION   XM_032612788
VERSION     XM_032612788.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8235
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8235
                     /gene="HNRNPU"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 60 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743792"
     CDS             238..2715
                     /gene="HNRNPU"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoprotein U
                     isoform X1"
                     /protein_id="XP_032468679.1"
                     /db_xref="GeneID:116743792"
                     /translation="MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDD
                     EEAGGRPAMEPGNGSLDLGGDSAGRSGAGLEQEAAAGGDDDEEEEEEEEEGIAALDGD
                     QMELGEENGAAGAADSGPMEEEEAASEDENGDDQGFQEGEDELGDEEEAAGDENGHGE
                     QQPQPPAAPQQQPQQQRGAAKEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEG
                     GGGGGRPGAPAAGDGKTEQKGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPV
                     EEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKV
                     CFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCSCE
                     TEDYGEKFDENDVITCFVNFESDEVELSYAKNGQDLGIAFKISKEVLAGRPLFPHVLC
                     HNCAVEFNFGQKEKPYFPIPEDYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGA
                     GKTTWVTKHAAENPGKYNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKF
                     IEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVE
                     GKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLEQYKEESKKALPPEKK
                     QNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFRGGAPGNRGGYNRRGNMPQRG
                     GGGGGSGGIGYPYPRGPVFPSRGGYSNRGNYNRGGMPNRGNYNQNFRGRGNNRGYKNQ
                     SQGYNQWQQGQFWGQKPWSQHYHQGYY"
     misc_feature    259..363
                     /gene="HNRNPU"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    1099..1626
                     /gene="HNRNPU"
                     /note="SPRY domain in heterogeneous nuclear
                     ribonucleoprotein U-like (hnRNP) protein 1; Region:
                     SPRY_hnRNP; cd12884"
                     /db_xref="CDD:293942"
     misc_feature    1732..2166
                     /gene="HNRNPU"
                     /note="AAA domain; Region: AAA_33; pfam13671"
                     /db_xref="CDD:463952"
ORIGIN      
        1 tgcgagagga cgttgcgtgc tcgctcgcgc caggcgagtc tccgcgtctt cctcgcgaac
       61 tcggtgaaag gaattggcgc cgttcgacac caggcggatc cgctctgcag caggaaccca
      121 gctccagccg cagccgcagc cgccgcctgg gccgaggagc agcctcagcc gccgccagtt
      181 gccgagtgag cggagccgag tttgagccag cgcctagcgg tgaatcgggg cctcaccatg
      241 agttcctcgc ctgttaatgt gaaaaagctg aaggtgtcgg agctgaagga ggagctcaag
      301 aagcggcgcc tgtccgacaa gggcctcaag gccgagctca tggagcgtct ccaggccgcg
      361 ctggacgacg aggaggccgg gggccgcccc gccatggagc ccgggaacgg cagcctagac
      421 ctgggcgggg attccgccgg gcgctcggga gcaggcctcg agcaggaggc cgcggcaggc
      481 ggcgatgacg acgaggagga agaggaggag gaggaggaag ggatagccgc cctggatggc
      541 gaccagatgg agctcgggga ggagaacggc gccgcggggg cggccgactc gggcccgatg
      601 gaggaggagg aagccgcctc ggaggacgag aatggcgacg accagggctt ccaggaaggg
      661 gaggatgagc tcggagacga ggaggaagcc gcgggcgacg agaacgggca cggggagcag
      721 cagcctcaac cgccggcggc gccgcagcaa cagccccagc agcagcgcgg ggccgccaag
      781 gaggccgcgg ggaagagcag cggccccacg tcgctgttcg cggtgacggt ggcgccgccc
      841 ggggcgaggc agggccagca gcaggcggga ggtaagaaga aggcggaagg cggcggaggc
      901 ggcggtcgcc ccggggctcc ggcggcggga gacggcaaaa cagaacagaa aggcggagat
      961 aaaaagagag gtgttaaaag acctcgagaa gatcatggcc gtggctattt tgagtacatt
     1021 gaagagaaca agtatagcag agctaaatct cctcagccac ctgttgaaga agaagatgag
     1081 cacttcgacg acacggttgt ttgtcttgat acttataatt gtgatctaca ttttaaaata
     1141 tcaagagatc gcctcagtgc ttcttccctt actatggaga gttttgcttt tctttgggct
     1201 ggaggaaggg catcctatgg tgtgtcaaaa ggcaaagtct gttttgagat gaaggttaca
     1261 gagaagatcc cagtaaggca tttatataca aaagatattg acatacacga agttcggatt
     1321 ggctggtcac taaccacaag tggaatgttg cttggtgaag aagaattttc ttatgggtat
     1381 tctctaaaag gaataaaaac atgcagctgt gagactgaag attatggaga gaagtttgat
     1441 gaaaatgatg tgattacatg ttttgttaat tttgaaagtg atgaagtaga actctcctat
     1501 gcaaagaatg gacaagatct tggcattgcc ttcaaaatca gtaaggaagt tcttgctgga
     1561 cgaccactct tcccgcatgt tctgtgccac aactgtgcgg ttgagtttaa ttttggtcag
     1621 aaggaaaagc catattttcc aatacctgaa gactatactt ttatccagaa tgtccccttg
     1681 gaggatcgag ttagaggacc aaaggggcct gaagagaaga aagattgtga agtggttatg
     1741 atgattggct tgccaggagc tggaaaaact acctgggtta ctaaacatgc agcagaaaat
     1801 cctggtaaat acaacattct tggaacaaac accataatgg ataaaatgat ggtggcaggt
     1861 tttaagaagc aaatggcaga tactgggaaa ctaaacacgc tgttgcagag agctccacag
     1921 tgtcttggaa agtttattga gattgctgcc cgtaagaaga gaaatttcat tttggatcag
     1981 acaaatgtgt ctgctgctgc ccagaggaga aaaatgtgcc tgtttgcagg cttccaacga
     2041 aaagctgttg tagtttgccc aaaagatgaa gactataagc aaagaacaca gaagaaagca
     2101 gaagtagagg gaaaagacct accagaacat gcagtcctca aaatgaaagg aaactttact
     2161 ctgccagaag tagctgagtg ctttgatgaa ataacgtatg ttgaacttca gaaggaggaa
     2221 gcccaaaaac ttttggagca atataaggaa gaaagcaaaa aagctcttcc accggaaaag
     2281 aaacagaaca caggctcaaa gaagagcaat aaaaataaga gtggcaagaa ccagtttaac
     2341 agaggtggtg gccatagagg gcgcggtgga ttcaatatgc gtggtggaaa tttcagagga
     2401 ggagctcctg ggaatcgtgg tggatataat aggaggggca atatgccaca gagaggtggt
     2461 ggcggtggcg gaagtggtgg aattggctat ccatatcctc gtggccctgt ttttcccagc
     2521 cgaggcggtt attcaaacag agggaattac aacagaggtg gaatgcctaa cagagggaac
     2581 tacaaccaga acttcagagg acgaggaaac aatcgtggct acaaaaatca atctcagggc
     2641 tacaaccagt ggcagcaggg tcaattctgg ggtcagaagc catggagtca gcattatcac
     2701 caaggatatt attgaatacc caaataaaac gaactgatac atatttctcc aaaaccttca
     2761 caagaagtcg actgttttct ttagtaggct aactttttaa acattccaca agaggaagtg
     2821 cctgcgggtt ccttttttag aagctttgtg ggttgatttt tttttttctt ttcttttttg
     2881 tacattttta attgcagttt taaagtgaat cgtaagagaa cctcagcatt gtgcacgata
     2941 agagaatgtg tcagtatttc agggttctac attttatctg taaaatgtga cttttttttt
     3001 ttatcacaac aaaagtaaaa tgttgctttg tacctggtgt cttttattaa gaatttactc
     3061 cccccatttc tcagagataa cagtcgggag ttattgtcac aatataatag aaatgttagc
     3121 aaccagattc atgtaaggac taagtggtcc tcatgaattg cataagactc tgtactgctc
     3181 gtattacact ccatcctctc tgtagtttgc tgagtagtgg aggggtaagc taaatagtag
     3241 tttttgacag taactgggaa ggctctttct ttttaagtaa caatgcaatt ggcatatttg
     3301 ggaatgaaga taaaatttgg aactaagata gagaagatgg agtgtatgta gaagggctgt
     3361 taaaaatgta aaacttggtt gcattatttg tggaggctca aacttgtgaa ggttaaatac
     3421 cataattttt ccatttgttc tgcattttga ttctgaaaag aaagctggct ttgcccattt
     3481 cttattaaaa aaacttgttg taaatccagt tgtctaatgg gatctatatg aagttagcta
     3541 tgtctgtatg cccttctccc acaaaatact gtataactag tgtgcttgta gtagttaact
     3601 ccaccatctt tgtaagctaa tgaaattgtg agtcacccat ttatatctta atttttaatc
     3661 atgtcagttc ttgaatgggt atctccttag cctgctgatt tctttttctt tctaaagaaa
     3721 gtgggtggag aaattaattt agacgtttgt ttgcaataaa aagaattcat tttactctcg
     3781 ttttgggatt ctcgccatca aggttcaaaa tccctttatg aaactcccaa gaggagaaaa
     3841 tttaagtgtg tgctttctgg acagcttatt ctctgtactt ggaacattta ggttttaaaa
     3901 acttaaatgt gtactgacaa ttgacttttt aaattatgaa gtaaagttga atgcttccct
     3961 tcccctcccc gcccagatga cttttaacat ttaacgaggg gaaaaggtac tggctgggag
     4021 aagttaacac tcagtttatc atctttacaa aatgctaatg gctgtcctca actgataatt
     4081 atatatacat ctgtataata catgaaactc tgggaacaga tgcttttaga agccatcatg
     4141 caagccagtc actactacac aacactgcta acttaactgt agttatgtga taacattaga
     4201 tcccctaatt gtaattttat tgggtttgca cagaacactt aatcttctaa aggaccctca
     4261 ctcatgtgag gtgaggaatc aggagtcaaa ctgtagaact aaaacttgac atcagtttag
     4321 tgtttcattg gtgttttagg ttgcttctgg taagtatagg tttgtttata tttgactgtt
     4381 tagatttttg ttttagccat ttaagatcag atttttaact atttatactc ctaggaattt
     4441 tcttgctaaa ggatgagctg gagttgagtt tcagatgatg gtgtaggttc agttgagaat
     4501 tttttggcct ataaccctac aattaaccat aggaatactt aacagtacaa gatagtgcct
     4561 caggagcttt tgtcttttta gcagttaact taatgcaagc aaccatttgc atgagtctgc
     4621 ttttcaatat acatcagtat tactggggtt gtataaactt agccgggggg gggggggggg
     4681 ggtgggagta aggtttgttg ctaatcagtg tttgtgtcct aaatgtttag gtgctattga
     4741 aaaatcttgg atataccttc tagcttaaaa ttgcttatta aagaattcat attctaatca
     4801 ttgcagtggg agagtgatgg ccaagtgaca tttggtaggc tgtcatgcct gtgcagcaca
     4861 gaaagttttg ggaagagaga tgggatagat aaaaatgccc aggaaaatgt taagttttaa
     4921 gaagcagttt caaggtcaga attaatagta acacctgcat ttgtatgaag tgacataatc
     4981 ctagagcgta tttaagaaat taagaagagg gagtgcacca tatagcaaat aagaaaaaaa
     5041 gttgatgcca agtttggcat aatgagatct gtaaatgaga aacttggttt attgttcacc
     5101 ccttcccttg cctacctccc ctcaatggca agcaaaacac tgaataaaca aaaattatct
     5161 gaacagatgt cccaattata ccctgagaaa actcacctgt gagattgctc ttggtttaag
     5221 gggtgctttc actagaaact tttgcatata gttaatacct atcatcctga ggcaagaatt
     5281 gaattagatt ggttactaag acgttaatca ggaaagaaca gaaagtgctt taagttagaa
     5341 gtcataaagt aactggaact gtaaaaagtt ttctttgttg ctggtagttt acgccttgtt
     5401 acttctatct agcctttggt ggctggctct ggctcagacc taggaggctg agaccagctt
     5461 ctggccctga tacccaaccc agacagcaag atgaaatctt aaaaatgaag tatgagtcaa
     5521 atcaatttga cattgaagtg acaaaaagaa gccatattaa atctaggaaa cgataagctg
     5581 tcatttgcct agtatcctgt ctgaaaataa atatggaact agatgtcttg aacactcaca
     5641 agattttaaa gcttgttaaa gacagttttc cttgaaaaaa tactgttttc aaggaaaggt
     5701 aactcggtag tatttctttt tcacctcctg tggagtttac gttcacggac agactgtttt
     5761 gtattcgcct cagttgtgga aattgacatt tttctatgaa cttttattta atataaattg
     5821 gcttttatcc taggattgtt ttttatagcc catcccattg cacaaatgag gaaacatttt
     5881 gatagcttat aaggcactgg tataggcatc tttcacatgt aaagatctgt aagggtattt
     5941 ctgatgtgct ttaaaagcct aaaccagaat aaacttacta aggaaggcat aaacttgtat
     6001 cttcagtcca ggtcgtagtt gctggtatta gatataaaac acatcttaaa atcattagtt
     6061 tccgtaattt ccttcttaca cattgaaatg ttttgaatct aaacttggtc attgttcata
     6121 tttctggggc tctggacttt ataaaaatgg gtttaggttt taacatttta gtaatagtta
     6181 atgaaaataa gggtgtatgt taatggcaat ggcctggcaa taagttgcaa tgcttagttt
     6241 atgtattgga actcttgctt atgcgtgagt tttaagggac tgttaagtta gtgctttgag
     6301 ttagaaactt accaactgcc tcatctctaa acagcaattt ggatttatta ggttaaacca
     6361 cggtttcttc aaatcattaa ttgccttaac taaaaaatag gtaaaactgc aatatccttg
     6421 tgatgtggag agcctttatc ttgggtaatt ttcagatgtg actctttttg gccctgtcat
     6481 tgcacaactt ctgtgctaaa acatgcaggt aatagatcta gccagttcag tgcttgagtt
     6541 ttatttaggc tgctctaatc cctagttctt aacttagtac tacaggtaca tgtttacaag
     6601 acacatagta aaattacata gtccacctaa ctcctgttga agtgacattt gttttattaa
     6661 tccatactaa tcttgatgtt tgaaaagtaa atccttaaga atttggaaat gacctacagt
     6721 actgatggat gtagtatgtg tcccctagtg tgttgaggta ggaaaaaaat caaaacccag
     6781 catccccaag taccttaaca ttaatcttaa actataaact tgtgaatttg aacaggaaat
     6841 aacctacctt aacatacaat ttttatatat tttgctgatt aggtatgcca ttttatttgg
     6901 tggtcacatt tagtaaattt caaccatgca gatagctgaa tctcagaaaa taatagcttt
     6961 aggtaggagg gaaatggcta acaaagataa gtaggcatat atactttcac atcttagccg
     7021 atggactaaa gatatagggt gatagggtat gttcaattag tttgcccaag gaattagtcc
     7081 atgaggaatg gtagactgga aataggtggg aatattactc ataatgttaa ccagaattac
     7141 tcaaaaaaat gtaacacctg taaattgtgc tgttaggttg ggaatgtgct gtccacctgg
     7201 gaagctgaat aagtacaact ttttggcatt atgtagacag ttggtgcttt cactggcgat
     7261 tgtagatcca gtattagggg agaaaatgtt gcagataact gataggccag gacatctata
     7321 atccgtttgg ttaggtgagt tattgggaca agaacttaat cgtgtgttta atgtgtaatc
     7381 attttatcac ctaggagtat tacaattttt tttttccttt tcatgccagg aatcaacatg
     7441 tacttgcatc ttgacaagga acaggggttt tgcttttaaa caaaactgga tctgtgggta
     7501 tgagaaacta ttatagttga aagtgatgtg ggaataccag tccaggcaaa tggagaaatg
     7561 tcttatggaa agttaatttg ttcagttaat ttgttcaaat atttcagtta aaatcacagc
     7621 gctacaccaa tggcacagca gttattcctg agcatgccca gcttgggtat ctgcacaact
     7681 ggatgttatg aagggactac aggcctggaa agctagcata gtgtttaaaa gctgtaaaca
     7741 ctgaactgtt gtggcatgtt cttttctgcc aatcctctaa tactccattc tgtgctctta
     7801 caagaagtaa aattagtttt gcctagtaag atattttata cttgccaagc acttgagaag
     7861 cactgccaca aattagtatc agccaaaatt tttttttttt tttttaaagc aaaagcaatc
     7921 aagaactttg agatggccac tgtagacatt taacgtgcgt ggctttcgtg agaacgaaaa
     7981 aagagatgca gagaaagtga gataaagtta atacctcaga agaacagttg aagcttactt
     8041 gaatgacagg ataactttgt actaaggata acttagtaat gacaggataa ctttgtaata
     8101 agtagttgtt aataaggtat cctttcagtt gtctgtagtt aagggagatg ggagagtcac
     8161 ggtcaagaac aacaaaaggt tccaacttac tttttttttt ttttgaaaaa ataaaaaata
     8221 atgtgctgat ttaaa
//
LOCUS       XM_032612797            8197 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heterogeneous nuclear ribonucleoprotein U
            (HNRNPU), transcript variant X2, mRNA.
ACCESSION   XM_032612797
VERSION     XM_032612797.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8197
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8197
                     /gene="HNRNPU"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 72 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743792"
     CDS             257..2677
                     /gene="HNRNPU"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoprotein U
                     isoform X2"
                     /protein_id="XP_032468688.1"
                     /db_xref="GeneID:116743792"
                     /translation="MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDD
                     EEAGGRPAMEPGNGSLDLGGDSAGRSGAGLEQEAAAGGDDDEEEEEEEEEGIAALDGD
                     QMELGEENGAAGAADSGPMEEEEAASEDENGDDQGFQEGEDELGDEEEAAGDENGHGE
                     QQPQPPAAPQQQPQQQRGAAKEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGDGKTEQ
                     KGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNC
                     DLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKD
                     IDIHEVRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCSCETEDYGEKFDENDVITCFVN
                     FESDEVELSYAKNGQDLGIAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPI
                     PEDYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNI
                     LGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVS
                     AAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLP
                     EVAECFDEITYVELQKEEAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFN
                     RGGGHRGRGGFNMRGGNFRGGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRGPVF
                     PSRGGYSNRGNYNRGGMPNRGNYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWS
                     QHYHQGYY"
     misc_feature    278..382
                     /gene="HNRNPU"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    1061..1588
                     /gene="HNRNPU"
                     /note="SPRY domain in heterogeneous nuclear
                     ribonucleoprotein U-like (hnRNP) protein 1; Region:
                     SPRY_hnRNP; cd12884"
                     /db_xref="CDD:293942"
     misc_feature    1694..2128
                     /gene="HNRNPU"
                     /note="AAA domain; Region: AAA_33; pfam13671"
                     /db_xref="CDD:463952"
ORIGIN      
        1 acgtgcgcgg caccgcccct gcgagaggac gttgcgtgct cgctcgcgcc aggcgagtct
       61 ccgcgtcttc ctcgcgaact cggtgaaagg aattggcgcc gttcgacacc aggcggatcc
      121 gctctgcagc aggaacccag ctccagccgc agccgcagcc gccgcctggg ccgaggagca
      181 gcctcagccg ccgccagttg ccgagtgagc ggagccgagt ttgagccagc gcctagcggt
      241 gaatcggggc ctcaccatga gttcctcgcc tgttaatgtg aaaaagctga aggtgtcgga
      301 gctgaaggag gagctcaaga agcggcgcct gtccgacaag ggcctcaagg ccgagctcat
      361 ggagcgtctc caggccgcgc tggacgacga ggaggccggg ggccgccccg ccatggagcc
      421 cgggaacggc agcctagacc tgggcgggga ttccgccggg cgctcgggag caggcctcga
      481 gcaggaggcc gcggcaggcg gcgatgacga cgaggaggaa gaggaggagg aggaggaagg
      541 gatagccgcc ctggatggcg accagatgga gctcggggag gagaacggcg ccgcgggggc
      601 ggccgactcg ggcccgatgg aggaggagga agccgcctcg gaggacgaga atggcgacga
      661 ccagggcttc caggaagggg aggatgagct cggagacgag gaggaagccg cgggcgacga
      721 gaacgggcac ggggagcagc agcctcaacc gccggcggcg ccgcagcaac agccccagca
      781 gcagcgcggg gccgccaagg aggccgcggg gaagagcagc ggccccacgt cgctgttcgc
      841 ggtgacggtg gcgccgcccg gggcgaggca gggccagcag caggcgggag gagacggcaa
      901 aacagaacag aaaggcggag ataaaaagag aggtgttaaa agacctcgag aagatcatgg
      961 ccgtggctat tttgagtaca ttgaagagaa caagtatagc agagctaaat ctcctcagcc
     1021 acctgttgaa gaagaagatg agcacttcga cgacacggtt gtttgtcttg atacttataa
     1081 ttgtgatcta cattttaaaa tatcaagaga tcgcctcagt gcttcttccc ttactatgga
     1141 gagttttgct tttctttggg ctggaggaag ggcatcctat ggtgtgtcaa aaggcaaagt
     1201 ctgttttgag atgaaggtta cagagaagat cccagtaagg catttatata caaaagatat
     1261 tgacatacac gaagttcgga ttggctggtc actaaccaca agtggaatgt tgcttggtga
     1321 agaagaattt tcttatgggt attctctaaa aggaataaaa acatgcagct gtgagactga
     1381 agattatgga gagaagtttg atgaaaatga tgtgattaca tgttttgtta attttgaaag
     1441 tgatgaagta gaactctcct atgcaaagaa tggacaagat cttggcattg ccttcaaaat
     1501 cagtaaggaa gttcttgctg gacgaccact cttcccgcat gttctgtgcc acaactgtgc
     1561 ggttgagttt aattttggtc agaaggaaaa gccatatttt ccaatacctg aagactatac
     1621 ttttatccag aatgtcccct tggaggatcg agttagagga ccaaaggggc ctgaagagaa
     1681 gaaagattgt gaagtggtta tgatgattgg cttgccagga gctggaaaaa ctacctgggt
     1741 tactaaacat gcagcagaaa atcctggtaa atacaacatt cttggaacaa acaccataat
     1801 ggataaaatg atggtggcag gttttaagaa gcaaatggca gatactggga aactaaacac
     1861 gctgttgcag agagctccac agtgtcttgg aaagtttatt gagattgctg cccgtaagaa
     1921 gagaaatttc attttggatc agacaaatgt gtctgctgct gcccagagga gaaaaatgtg
     1981 cctgtttgca ggcttccaac gaaaagctgt tgtagtttgc ccaaaagatg aagactataa
     2041 gcaaagaaca cagaagaaag cagaagtaga gggaaaagac ctaccagaac atgcagtcct
     2101 caaaatgaaa ggaaacttta ctctgccaga agtagctgag tgctttgatg aaataacgta
     2161 tgttgaactt cagaaggagg aagcccaaaa acttttggag caatataagg aagaaagcaa
     2221 aaaagctctt ccaccggaaa agaaacagaa cacaggctca aagaagagca ataaaaataa
     2281 gagtggcaag aaccagttta acagaggtgg tggccataga gggcgcggtg gattcaatat
     2341 gcgtggtgga aatttcagag gaggagctcc tgggaatcgt ggtggatata ataggagggg
     2401 caatatgcca cagagaggtg gtggcggtgg cggaagtggt ggaattggct atccatatcc
     2461 tcgtggccct gtttttccca gccgaggcgg ttattcaaac agagggaatt acaacagagg
     2521 tggaatgcct aacagaggga actacaacca gaacttcaga ggacgaggaa acaatcgtgg
     2581 ctacaaaaat caatctcagg gctacaacca gtggcagcag ggtcaattct ggggtcagaa
     2641 gccatggagt cagcattatc accaaggata ttattgaata cccaaataaa acgaactgat
     2701 acatatttct ccaaaacctt cacaagaagt cgactgtttt ctttagtagg ctaacttttt
     2761 aaacattcca caagaggaag tgcctgcggg ttcctttttt agaagctttg tgggttgatt
     2821 tttttttttc ttttcttttt tgtacatttt taattgcagt tttaaagtga atcgtaagag
     2881 aacctcagca ttgtgcacga taagagaatg tgtcagtatt tcagggttct acattttatc
     2941 tgtaaaatgt gacttttttt ttttatcaca acaaaagtaa aatgttgctt tgtacctggt
     3001 gtcttttatt aagaatttac tccccccatt tctcagagat aacagtcggg agttattgtc
     3061 acaatataat agaaatgtta gcaaccagat tcatgtaagg actaagtggt cctcatgaat
     3121 tgcataagac tctgtactgc tcgtattaca ctccatcctc tctgtagttt gctgagtagt
     3181 ggaggggtaa gctaaatagt agtttttgac agtaactggg aaggctcttt ctttttaagt
     3241 aacaatgcaa ttggcatatt tgggaatgaa gataaaattt ggaactaaga tagagaagat
     3301 ggagtgtatg tagaagggct gttaaaaatg taaaacttgg ttgcattatt tgtggaggct
     3361 caaacttgtg aaggttaaat accataattt ttccatttgt tctgcatttt gattctgaaa
     3421 agaaagctgg ctttgcccat ttcttattaa aaaaacttgt tgtaaatcca gttgtctaat
     3481 gggatctata tgaagttagc tatgtctgta tgcccttctc ccacaaaata ctgtataact
     3541 agtgtgcttg tagtagttaa ctccaccatc tttgtaagct aatgaaattg tgagtcaccc
     3601 atttatatct taatttttaa tcatgtcagt tcttgaatgg gtatctcctt agcctgctga
     3661 tttctttttc tttctaaaga aagtgggtgg agaaattaat ttagacgttt gtttgcaata
     3721 aaaagaattc attttactct cgttttggga ttctcgccat caaggttcaa aatcccttta
     3781 tgaaactccc aagaggagaa aatttaagtg tgtgctttct ggacagctta ttctctgtac
     3841 ttggaacatt taggttttaa aaacttaaat gtgtactgac aattgacttt ttaaattatg
     3901 aagtaaagtt gaatgcttcc cttcccctcc ccgcccagat gacttttaac atttaacgag
     3961 gggaaaaggt actggctggg agaagttaac actcagttta tcatctttac aaaatgctaa
     4021 tggctgtcct caactgataa ttatatatac atctgtataa tacatgaaac tctgggaaca
     4081 gatgctttta gaagccatca tgcaagccag tcactactac acaacactgc taacttaact
     4141 gtagttatgt gataacatta gatcccctaa ttgtaatttt attgggtttg cacagaacac
     4201 ttaatcttct aaaggaccct cactcatgtg aggtgaggaa tcaggagtca aactgtagaa
     4261 ctaaaacttg acatcagttt agtgtttcat tggtgtttta ggttgcttct ggtaagtata
     4321 ggtttgttta tatttgactg tttagatttt tgttttagcc atttaagatc agatttttaa
     4381 ctatttatac tcctaggaat tttcttgcta aaggatgagc tggagttgag tttcagatga
     4441 tggtgtaggt tcagttgaga attttttggc ctataaccct acaattaacc ataggaatac
     4501 ttaacagtac aagatagtgc ctcaggagct tttgtctttt tagcagttaa cttaatgcaa
     4561 gcaaccattt gcatgagtct gcttttcaat atacatcagt attactgggg ttgtataaac
     4621 ttagccgggg gggggggggg ggggtgggag taaggtttgt tgctaatcag tgtttgtgtc
     4681 ctaaatgttt aggtgctatt gaaaaatctt ggatatacct tctagcttaa aattgcttat
     4741 taaagaattc atattctaat cattgcagtg ggagagtgat ggccaagtga catttggtag
     4801 gctgtcatgc ctgtgcagca cagaaagttt tgggaagaga gatgggatag ataaaaatgc
     4861 ccaggaaaat gttaagtttt aagaagcagt ttcaaggtca gaattaatag taacacctgc
     4921 atttgtatga agtgacataa tcctagagcg tatttaagaa attaagaaga gggagtgcac
     4981 catatagcaa ataagaaaaa aagttgatgc caagtttggc ataatgagat ctgtaaatga
     5041 gaaacttggt ttattgttca ccccttccct tgcctacctc ccctcaatgg caagcaaaac
     5101 actgaataaa caaaaattat ctgaacagat gtcccaatta taccctgaga aaactcacct
     5161 gtgagattgc tcttggttta aggggtgctt tcactagaaa cttttgcata tagttaatac
     5221 ctatcatcct gaggcaagaa ttgaattaga ttggttacta agacgttaat caggaaagaa
     5281 cagaaagtgc tttaagttag aagtcataaa gtaactggaa ctgtaaaaag ttttctttgt
     5341 tgctggtagt ttacgccttg ttacttctat ctagcctttg gtggctggct ctggctcaga
     5401 cctaggaggc tgagaccagc ttctggccct gatacccaac ccagacagca agatgaaatc
     5461 ttaaaaatga agtatgagtc aaatcaattt gacattgaag tgacaaaaag aagccatatt
     5521 aaatctagga aacgataagc tgtcatttgc ctagtatcct gtctgaaaat aaatatggaa
     5581 ctagatgtct tgaacactca caagatttta aagcttgtta aagacagttt tccttgaaaa
     5641 aatactgttt tcaaggaaag gtaactcggt agtatttctt tttcacctcc tgtggagttt
     5701 acgttcacgg acagactgtt ttgtattcgc ctcagttgtg gaaattgaca tttttctatg
     5761 aacttttatt taatataaat tggcttttat cctaggattg ttttttatag cccatcccat
     5821 tgcacaaatg aggaaacatt ttgatagctt ataaggcact ggtataggca tctttcacat
     5881 gtaaagatct gtaagggtat ttctgatgtg ctttaaaagc ctaaaccaga ataaacttac
     5941 taaggaaggc ataaacttgt atcttcagtc caggtcgtag ttgctggtat tagatataaa
     6001 acacatctta aaatcattag tttccgtaat ttccttctta cacattgaaa tgttttgaat
     6061 ctaaacttgg tcattgttca tatttctggg gctctggact ttataaaaat gggtttaggt
     6121 tttaacattt tagtaatagt taatgaaaat aagggtgtat gttaatggca atggcctggc
     6181 aataagttgc aatgcttagt ttatgtattg gaactcttgc ttatgcgtga gttttaaggg
     6241 actgttaagt tagtgctttg agttagaaac ttaccaactg cctcatctct aaacagcaat
     6301 ttggatttat taggttaaac cacggtttct tcaaatcatt aattgcctta actaaaaaat
     6361 aggtaaaact gcaatatcct tgtgatgtgg agagccttta tcttgggtaa ttttcagatg
     6421 tgactctttt tggccctgtc attgcacaac ttctgtgcta aaacatgcag gtaatagatc
     6481 tagccagttc agtgcttgag ttttatttag gctgctctaa tccctagttc ttaacttagt
     6541 actacaggta catgtttaca agacacatag taaaattaca tagtccacct aactcctgtt
     6601 gaagtgacat ttgttttatt aatccatact aatcttgatg tttgaaaagt aaatccttaa
     6661 gaatttggaa atgacctaca gtactgatgg atgtagtatg tgtcccctag tgtgttgagg
     6721 taggaaaaaa atcaaaaccc agcatcccca agtaccttaa cattaatctt aaactataaa
     6781 cttgtgaatt tgaacaggaa ataacctacc ttaacataca atttttatat attttgctga
     6841 ttaggtatgc cattttattt ggtggtcaca tttagtaaat ttcaaccatg cagatagctg
     6901 aatctcagaa aataatagct ttaggtagga gggaaatggc taacaaagat aagtaggcat
     6961 atatactttc acatcttagc cgatggacta aagatatagg gtgatagggt atgttcaatt
     7021 agtttgccca aggaattagt ccatgaggaa tggtagactg gaaataggtg ggaatattac
     7081 tcataatgtt aaccagaatt actcaaaaaa atgtaacacc tgtaaattgt gctgttaggt
     7141 tgggaatgtg ctgtccacct gggaagctga ataagtacaa ctttttggca ttatgtagac
     7201 agttggtgct ttcactggcg attgtagatc cagtattagg ggagaaaatg ttgcagataa
     7261 ctgataggcc aggacatcta taatccgttt ggttaggtga gttattggga caagaactta
     7321 atcgtgtgtt taatgtgtaa tcattttatc acctaggagt attacaattt tttttttcct
     7381 tttcatgcca ggaatcaaca tgtacttgca tcttgacaag gaacaggggt tttgctttta
     7441 aacaaaactg gatctgtggg tatgagaaac tattatagtt gaaagtgatg tgggaatacc
     7501 agtccaggca aatggagaaa tgtcttatgg aaagttaatt tgttcagtta atttgttcaa
     7561 atatttcagt taaaatcaca gcgctacacc aatggcacag cagttattcc tgagcatgcc
     7621 cagcttgggt atctgcacaa ctggatgtta tgaagggact acaggcctgg aaagctagca
     7681 tagtgtttaa aagctgtaaa cactgaactg ttgtggcatg ttcttttctg ccaatcctct
     7741 aatactccat tctgtgctct tacaagaagt aaaattagtt ttgcctagta agatatttta
     7801 tacttgccaa gcacttgaga agcactgcca caaattagta tcagccaaaa tttttttttt
     7861 tttttttaaa gcaaaagcaa tcaagaactt tgagatggcc actgtagaca tttaacgtgc
     7921 gtggctttcg tgagaacgaa aaaagagatg cagagaaagt gagataaagt taatacctca
     7981 gaagaacagt tgaagcttac ttgaatgaca ggataacttt gtactaagga taacttagta
     8041 atgacaggat aactttgtaa taagtagttg ttaataaggt atcctttcag ttgtctgtag
     8101 ttaagggaga tgggagagtc acggtcaaga acaacaaaag gttccaactt actttttttt
     8161 ttttttgaaa aaataaaaaa taatgtgctg atttaaa
//
LOCUS       XM_032612806             933 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytochrome c oxidase assembly protein
            COX20, mitochondrial (LOC116743798), mRNA.
ACCESSION   XM_032612806
VERSION     XM_032612806.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..933
                     /gene="LOC116743798"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743798"
     CDS             147..698
                     /gene="LOC116743798"
                     /codon_start=1
                     /product="cytochrome c oxidase assembly protein COX20,
                     mitochondrial"
                     /protein_id="XP_032468697.1"
                     /db_xref="GeneID:116743798"
                     /translation="MAATPKAACSASAAAAETGKRSLKWRTARTQARAGLARAGRGGA
                     SAHGGQRLRRGGVEAPTVPMAAAPEAGEPGKGKPFKLLGILDVENIPCARDSTLYGSL
                     GSVVAGLGHFLITSRIRRSCDVAIGGFILVTLGCWFHCRYNYAKLRIQERLAREGIKN
                     KILYESTHLDPERKQTNSGSSSN"
     misc_feature    375..629
                     /gene="LOC116743798"
                     /note="Cytochrome c oxidase assembly protein COX20;
                     Region: Cox20; pfam12597"
                     /db_xref="CDD:403707"
ORIGIN      
        1 aggcgggaaa aggcgcagcc tcgaagtgcc aagagtccgg gtgcgcggtt gcttcacgag
       61 tccttctcct cctcccctgg tccaggccct cgggctgcgg agagccccgg tagagaagac
      121 gtgatccgtt caactgaaca aaggaaatgg cggccacacc aaaagcagcc tgctcggcca
      181 gtgctgccgc cgcggagact gggaaacgtt ccctaaaatg gcggacagcg cgaacgcagg
      241 cgcgggccgg gctggccagg gcagggcggg gcggggcgtc cgctcacggc ggccagcggc
      301 tgcgacgggg cggggtggag gcgccgactg tccccatggc ggctgcgccg gaggccggag
      361 agcccggaaa ggggaagccc tttaagctcc taggaatttt agatgttgaa aacatcccct
      421 gtgctcggga ttcgacattg tatggctcat taggatctgt tgtggctggc ctcggacact
      481 ttttgataac tagtagaatt agaagatcat gtgatgttgc aataggagga tttatcttgg
      541 tgactttagg atgctggttc cattgtaggt ataattatgc aaagctaaga atccaggaaa
      601 gacttgccag agaaggaatt aaaaacaaga ttttatatga aagtacccac cttgatcctg
      661 aaagaaaaca aaccaacagc ggcagcagca gcaattgagc agtcttgagc acagaaaacc
      721 cagatacaac tcacttcggt gtgaacaaag ccgagatcaa ctatagaaag cattttatat
      781 accacaaggc tttcaaccaa gtaaataaag tatgtgtaag ttgttgtcat tttacatgtg
      841 tatgagtatt tacaaactta ttctgcccct gtatctactg tcagtatagc acatagtgga
      901 ctcatactta aaataaacct cgtgtttatc atg
//
LOCUS       XM_032612819            2132 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 2 (RNF2), transcript
            variant X1, mRNA.
ACCESSION   XM_032612819
VERSION     XM_032612819.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2132
                     /gene="RNF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743804"
     CDS             278..1288
                     /gene="RNF2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RING2"
                     /protein_id="XP_032468710.1"
                     /db_xref="GeneID:116743804"
                     /translation="MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRS
                     LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRP
                     DPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGK
                     KQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNATVAIDP
                     VMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRNKG
                     ESNQMNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKE
                     HK"
     misc_feature    386..616
                     /gene="RNF2"
                     /note="RING finger, HC subclass, found in really
                     interesting new gene 2 protein (RING2) and similar
                     proteins; Region: RING-HC_RING2; cd16740"
                     /db_xref="CDD:438398"
     misc_feature    order(419..424,464..466,470..475,479..481,485..487,
                     506..508,518..520,530..532,554..556,560..571,578..586,
                     590..595,599..604,611..616)
                     /gene="RNF2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438398"
     misc_feature    950..1267
                     /gene="RNF2"
                     /note="RING finger- and WD40-associated ubiquitin-like
                     (RAWUL) domain found in really interesting new gene 2
                     protein (RING2); Region: RAWUL_RING2; cd17167"
                     /db_xref="CDD:340687"
     misc_feature    order(956..964,1016..1027,1037..1039,1046..1054,
                     1058..1063,1070..1075,1241..1249)
                     /gene="RNF2"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340687"
ORIGIN      
        1 ccttgcgcca cgggtctcct ggcgcagtgc acgtccccgt cccgcgcctc cgccccctcg
       61 cccactcgct ccttcccgcc ctctccgctg tgccggccga gccggcttcc cctcggtctc
      121 tcatgaatat tgagcggccc ctgttgtatt tcccgagctc cattgcggaa gccgaggctc
      181 gccatattgt gcggcggcgc cggcagccgc ggcaccctgt acctgagtct cgccccggcc
      241 gcggctagcg cagccccgga ctggagcagg ggccgcaatg tctcaggctg tgcagacaaa
      301 cggaactcaa ccattaagca aaacatggga actcagttta tatgaattac aacgaacacc
      361 tcaggaggca ataacggatg gcttggaaat tgtggtttca cctcgaagtc tacacagtga
      421 attaatgtgc ccaatttgtt tggatatgtt gaagaacacc atgactacaa aagagtgttt
      481 acatcgtttt tgtgcagact gcattatcac agccctcaga agtggcaata aagaatgccc
      541 tacctgtcgg aaaaagctag tttccaaaag atcactaaga ccagacccaa actttgatgc
      601 actcatcagc aaaatttatc caagtcgtga tgagtatgaa gctcatcaag aaagagtatt
      661 agccaggatc aacaagcaca ataatcagca agcactcagt cacagcattg aggaaggact
      721 gaagatacag gccatgaaca gattacagcg aggcaagaaa caacagattg aaaatggtag
      781 tggagcagaa gacaatggag acagttctca ctgtagtaat gcatccacac atagcaatca
      841 ggaagcagga cctagtaaca aacggaccaa aacatctgat gattctgggc ttgagcttga
      901 taataacaat gcaacagtgg caattgatcc agtaatggat ggtgctagtg aaattgaatt
      961 agtattcagg cctcatccca cacttatgga aaaagatgac agtgcacaga caaggtacat
     1021 aaagacttca ggtaatgcca ctgttgatca cttatccaag tatctggctg tgaggttagc
     1081 tttagaagaa cttcgaaaca aaggagaatc aaaccagatg aaccttgata cagccagtga
     1141 gaagcagtat accatttaca tagcaacagc cagtggccag ttcactgtgt taaatggctc
     1201 tttttctttg gaattggtca gtgagaaata ctggaaggtg aacaaaccca tggaacttta
     1261 ttatgcaccc acaaaggagc acaaatgagc ttttactaaa accaattctg agaatgaact
     1321 tttttatagc ctatttcttt aatattaaag atgtaccgtc attactttta tggacagaac
     1381 attggatatg ttgttcaatt ttctttctga gccagattcg tttacactat tagaatcttt
     1441 tccccttaat ttaagatatc cttttttgga agggactgca gttattcagt actttttctt
     1501 tccttttaaa actatatcta gggttgtatg ttttcacaaa gtgtggttcc atttggagca
     1561 tcttagagct tttgacccag gaatttttca tagttctgta ttcttaagtg aagattcagt
     1621 tggccatcct ttcccctccc ctcagaagtt ttttaggcct acagaatgtt aaataatatg
     1681 tattttgact ttttttcctg gagtcttgta tatttatagt tttctatata agctgtagta
     1741 tcttcatgaa gaccaaggct caaatttact gtgcgtaaaa aacaattctc ataggattat
     1801 tattttcatg gtgttttctt ccataatatc tcatttttta aaaaaaagtt ctttatgaac
     1861 ttagtgtcca ttgtcatgca atgttatttt cttccatttt tttctctcta attttggaat
     1921 ttctgatcct gggaaagaga accaaacaag atctcaagtt ctgtgagaac ttggttcatt
     1981 cacagatttc actgaagaaa gaaaaattaa attggtctta tgtagtcttc aggtgtatat
     2041 ttaaagaagt cttttttgca ttagttctac tgtcacctca gttcctttat tatgtgttat
     2101 gttttttcct attaaaatac cagagacatg ga
//
LOCUS       XM_032612829            1323 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 2 (RNF2), transcript
            variant X2, mRNA.
ACCESSION   XM_032612829
VERSION     XM_032612829.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1323
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1323
                     /gene="RNF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743804"
     CDS             222..1232
                     /gene="RNF2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RING2"
                     /protein_id="XP_032468720.1"
                     /db_xref="GeneID:116743804"
                     /translation="MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRS
                     LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRP
                     DPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGK
                     KQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNATVAIDP
                     VMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRNKG
                     ESNQMNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKE
                     HK"
     misc_feature    330..560
                     /gene="RNF2"
                     /note="RING finger, HC subclass, found in really
                     interesting new gene 2 protein (RING2) and similar
                     proteins; Region: RING-HC_RING2; cd16740"
                     /db_xref="CDD:438398"
     misc_feature    order(363..368,408..410,414..419,423..425,429..431,
                     450..452,462..464,474..476,498..500,504..515,522..530,
                     534..539,543..548,555..560)
                     /gene="RNF2"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438398"
     misc_feature    894..1211
                     /gene="RNF2"
                     /note="RING finger- and WD40-associated ubiquitin-like
                     (RAWUL) domain found in really interesting new gene 2
                     protein (RING2); Region: RAWUL_RING2; cd17167"
                     /db_xref="CDD:340687"
     misc_feature    order(900..908,960..971,981..983,990..998,1002..1007,
                     1014..1019,1185..1193)
                     /gene="RNF2"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340687"
ORIGIN      
        1 gaccccgtgg gcgaatctcg gggaatcctt ccttcgtgcg aaccgctcac tcctctgcgc
       61 ggaggccggg gctgcggtgc ggccccctcg cctcccgggc cggggacccc agcctctcca
      121 cgtccgctct ccgggggcga accgcgtgga atgcagggtt ttcctccccg ggcttccccc
      181 tcgcagccgg gtgtgtgtgt ccgcactgtg gagggtgagc aatgtctcag gctgtgcaga
      241 caaacggaac tcaaccatta agcaaaacat gggaactcag tttatatgaa ttacaacgaa
      301 cacctcagga ggcaataacg gatggcttgg aaattgtggt ttcacctcga agtctacaca
      361 gtgaattaat gtgcccaatt tgtttggata tgttgaagaa caccatgact acaaaagagt
      421 gtttacatcg tttttgtgca gactgcatta tcacagccct cagaagtggc aataaagaat
      481 gccctacctg tcggaaaaag ctagtttcca aaagatcact aagaccagac ccaaactttg
      541 atgcactcat cagcaaaatt tatccaagtc gtgatgagta tgaagctcat caagaaagag
      601 tattagccag gatcaacaag cacaataatc agcaagcact cagtcacagc attgaggaag
      661 gactgaagat acaggccatg aacagattac agcgaggcaa gaaacaacag attgaaaatg
      721 gtagtggagc agaagacaat ggagacagtt ctcactgtag taatgcatcc acacatagca
      781 atcaggaagc aggacctagt aacaaacgga ccaaaacatc tgatgattct gggcttgagc
      841 ttgataataa caatgcaaca gtggcaattg atccagtaat ggatggtgct agtgaaattg
      901 aattagtatt caggcctcat cccacactta tggaaaaaga tgacagtgca cagacaaggt
      961 acataaagac ttcaggtaat gccactgttg atcacttatc caagtatctg gctgtgaggt
     1021 tagctttaga agaacttcga aacaaaggag aatcaaacca gatgaacctt gatacagcca
     1081 gtgagaagca gtataccatt tacatagcaa cagccagtgg ccagttcact gtgttaaatg
     1141 gctctttttc tttggaattg gtcagtgaga aatactggaa ggtgaacaaa cccatggaac
     1201 tttattatgc acccacaaag gagcacaaat gagcttttac taaaaccaat tctgagaatg
     1261 aactttttta tagcctattt ctttaatatt aaagatgtac cgtcattact tttatggaca
     1321 gaa
//
LOCUS       XM_032612844            2273 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 7 (HSPB7), transcript variant X1, mRNA.
ACCESSION   XM_032612844
VERSION     XM_032612844.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2273
                     /gene="HSPB7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116743810"
     CDS             124..630
                     /gene="HSPB7"
                     /codon_start=1
                     /product="heat shock protein beta-7 isoform X1"
                     /protein_id="XP_032468735.1"
                     /db_xref="GeneID:116743810"
                     /translation="MSHRTSSTFRAERSFHSSSSSSSASHTLPAQEPPMEKALSMFSE
                     DFGSFMRPHSEPLAFPALPTARPGGQGNIKTLGDAYEFAVDVSDFSPEDIIVTTSNNN
                     IEVRAEKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDGSLTIRARRQPHTEHVQQ
                     IFRTEIKI"
     misc_feature    334..576
                     /gene="HSPB7"
                     /note="Alpha crystallin domain (ACD) found in mammalian
                     small heat shock protein (sHsp) HspB7, also known as
                     cardiovascular small heat shock protein (cvHsp), and
                     similar proteins. sHsps are molecular chaperones that
                     suppress protein aggregation and protect...; Region:
                     ACD_HspB7_like; cd06479"
                     /db_xref="CDD:107234"
     misc_feature    order(337..351,370..372,376..378,382..387,487..489,
                     550..555)
                     /gene="HSPB7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:107234"
ORIGIN      
        1 agggacggtt gggccttata aagcggcggc agccggggcc cggcacactc cctccgagcc
       61 tgctgcccac gcgccctcct gtccaccctg cccactggcc agggcccggc cgccctcccg
      121 tggatgagcc acaggacctc ctccaccttc agagcggaga gaagcttcca ttcttcctcc
      181 tcctcctcct cagcctccca cacccttccc gcccaggagc cgcccatgga gaaggcgttg
      241 agcatgttct ccgaggattt cggcagcttc atgcggcccc actcggagcc cctggccttc
      301 ccagccctcc ccacagcccg tcccgggggg cagggcaaca tcaagaccct gggcgacgcc
      361 tatgagtttg ccgtggacgt gagcgacttc tcacctgaag acatcatcgt caccacctcc
      421 aacaacaaca tagaagtgcg agctgagaag ctggcagccg acggcacggt catgaacacc
      481 tttgctcaca agtgccaact gccggaggac gtggacccca cgtcggtgac ctcggccctg
      541 agggaggacg gcagcctcac catccgggct cggcgccaac cacacacgga gcacgtccag
      601 cagatcttcc ggaccgagat aaaaatctga gggcctcccc ctcccttccc ccagctcccc
      661 catcttcccc actggccggc cagagtggct ctcctgaccc cctcatgaca gcttccggga
      721 catctcagcc caggttcagg ccctgacacc tcaaccccag accccaggtg ggtcatcccc
      781 tccaaatgtg ggcttctgct ctacccaggg caggccaggg acccccttgc ttcacgcatg
      841 gcgcccagat tccagatatg gcctcgttca cttaatccag aataaaggga ttgggatgga
      901 gaacaggaga tcccgaagaa gccagtttgg ggaaggggga ttgggacagg caggatctct
      961 gggcaaataa tctgcaggac agacagacaa attctgatct atggagtctc tgcagggcag
     1021 gggcaggggg actggggacc tggggacctg ggaccccctt ggccaagggg agcgggagag
     1081 gcagagggag atcacaggca gaggttccca gctaaagtga actggctggg cacagggagg
     1141 ccagagacag ccatgatggt ccgcttcccc tatgctgccc tccaagcccc gaaccagctg
     1201 ccaggctgtc tgcccacaag gtgccccagc cagccagctg tgccagcgca gggccacatt
     1261 gtgtctgtat atagatgggg tttttccaat acagctggtt cgtgataaac tgtgtgaacc
     1321 gtctgttacc tgctcatatg cctccaggta aacctgggcc aaggggtggg gctgatcctt
     1381 ctccctccca gccagagacc tgggctcccg gggctgcctc cactgcagac agcttacccc
     1441 acagaggaag catgcatggg gctttgggtc ctcaaggtag gaccccagct tcctgccaac
     1501 cttcccttgt ggccattcac ctcccccatc ccgtcctcta taatctgtga agctataggc
     1561 ttggtgtgtg tataccacac acacacacac acacacacac acacacacac acacgcaaac
     1621 aggcgtacac acatgcacac ttatctttgt ccttcaaaca ctaaacatta ccactggtta
     1681 aagccaaatc cggaatgttc taaaatcaga tttgcaatct ccattcttct caatggggac
     1741 agagtctgaa cagttgagcg cccagcttaa ccactgatgg ttggatttga acccacgatg
     1801 tcagaagctg ctctcaaacc gccctcccag ccctccgtgc agtggggggt agttcccctt
     1861 attctgcctc tcagcctgtg cgccctgcgc ccacagtttc ctgctagaga atgtcctaat
     1921 cacaggaaga gtccccaccc cagctccctc ccagtcccca gtccagggca aggacctccc
     1981 gtctgccttc attctgggga gccccaactg ccccccgtga ccctggctca gtctcccaca
     2041 tacagaagca ggggtgatgg gtaagggtgg ttcccagtta gtcggggccc ctggagcaag
     2101 tagcaaggcc agcctcggcc ctctgcacct ctttggtcag tgttctgtaa ggtgccctct
     2161 cacccctgcc attctggggc ccttaggaaa tgactcgggg tggggggcgc agagcagggt
     2221 tctggcattg taccccgcac acacaataaa cgacagaacc atggacttct gga
//
LOCUS       XM_032612852            2237 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heat shock protein family B (small)
            member 7 (HSPB7), transcript variant X2, mRNA.
ACCESSION   XM_032612852
VERSION     XM_032612852.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2237
                     /gene="HSPB7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743810"
     CDS             100..594
                     /gene="HSPB7"
                     /codon_start=1
                     /product="heat shock protein beta-7 isoform X2"
                     /protein_id="XP_032468743.1"
                     /db_xref="GeneID:116743810"
                     /translation="MSHRTSSTFRAERSFHSSSSSSSASHTLPAQEPPMEKALSMFSE
                     DFGSFMRPHSEPLAFPARPGGQGNIKTLGDAYEFAVDVSDFSPEDIIVTTSNNNIEVR
                     AEKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDGSLTIRARRQPHTEHVQQIFRT
                     EIKI"
     misc_feature    298..540
                     /gene="HSPB7"
                     /note="Alpha crystallin domain (ACD) found in mammalian
                     small heat shock protein (sHsp) HspB7, also known as
                     cardiovascular small heat shock protein (cvHsp), and
                     similar proteins. sHsps are molecular chaperones that
                     suppress protein aggregation and protect...; Region:
                     ACD_HspB7_like; cd06479"
                     /db_xref="CDD:107234"
     misc_feature    order(301..315,334..336,340..342,346..351,451..453,
                     514..519)
                     /gene="HSPB7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:107234"
ORIGIN      
        1 ggcggcagcc ggggcccggc acactccctc cgagcctgct gcccacgcgc cctcctgtcc
       61 accctgccca ctggccaggg cccggccgcc ctcccgtgga tgagccacag gacctcctcc
      121 accttcagag cggagagaag cttccattct tcctcctcct cctcctcagc ctcccacacc
      181 cttcccgccc aggagccgcc catggagaag gcgttgagca tgttctccga ggatttcggc
      241 agcttcatgc ggccccactc ggagcccctg gccttcccag cccgtcccgg ggggcagggc
      301 aacatcaaga ccctgggcga cgcctatgag tttgccgtgg acgtgagcga cttctcacct
      361 gaagacatca tcgtcaccac ctccaacaac aacatagaag tgcgagctga gaagctggca
      421 gccgacggca cggtcatgaa cacctttgct cacaagtgcc aactgccgga ggacgtggac
      481 cccacgtcgg tgacctcggc cctgagggag gacggcagcc tcaccatccg ggctcggcgc
      541 caaccacaca cggagcacgt ccagcagatc ttccggaccg agataaaaat ctgagggcct
      601 ccccctccct tcccccagct cccccatctt ccccactggc cggccagagt ggctctcctg
      661 accccctcat gacagcttcc gggacatctc agcccaggtt caggccctga cacctcaacc
      721 ccagacccca ggtgggtcat cccctccaaa tgtgggcttc tgctctaccc agggcaggcc
      781 agggaccccc ttgcttcacg catggcgccc agattccaga tatggcctcg ttcacttaat
      841 ccagaataaa gggattggga tggagaacag gagatcccga agaagccagt ttggggaagg
      901 gggattggga caggcaggat ctctgggcaa ataatctgca ggacagacag acaaattctg
      961 atctatggag tctctgcagg gcaggggcag ggggactggg gacctgggga cctgggaccc
     1021 ccttggccaa ggggagcggg agaggcagag ggagatcaca ggcagaggtt cccagctaaa
     1081 gtgaactggc tgggcacagg gaggccagag acagccatga tggtccgctt cccctatgct
     1141 gccctccaag ccccgaacca gctgccaggc tgtctgccca caaggtgccc cagccagcca
     1201 gctgtgccag cgcagggcca cattgtgtct gtatatagat ggggtttttc caatacagct
     1261 ggttcgtgat aaactgtgtg aaccgtctgt tacctgctca tatgcctcca ggtaaacctg
     1321 ggccaagggg tggggctgat ccttctccct cccagccaga gacctgggct cccggggctg
     1381 cctccactgc agacagctta ccccacagag gaagcatgca tggggctttg ggtcctcaag
     1441 gtaggacccc agcttcctgc caaccttccc ttgtggccat tcacctcccc catcccgtcc
     1501 tctataatct gtgaagctat aggcttggtg tgtgtatacc acacacacac acacacacac
     1561 acacacacac acacacacgc aaacaggcgt acacacatgc acacttatct ttgtccttca
     1621 aacactaaac attaccactg gttaaagcca aatccggaat gttctaaaat cagatttgca
     1681 atctccattc ttctcaatgg ggacagagtc tgaacagttg agcgcccagc ttaaccactg
     1741 atggttggat ttgaacccac gatgtcagaa gctgctctca aaccgccctc ccagccctcc
     1801 gtgcagtggg gggtagttcc ccttattctg cctctcagcc tgtgcgccct gcgcccacag
     1861 tttcctgcta gagaatgtcc taatcacagg aagagtcccc accccagctc cctcccagtc
     1921 cccagtccag ggcaaggacc tcccgtctgc cttcattctg gggagcccca actgcccccc
     1981 gtgaccctgg ctcagtctcc cacatacaga agcaggggtg atgggtaagg gtggttccca
     2041 gttagtcggg gcccctggag caagtagcaa ggccagcctc ggccctctgc acctctttgg
     2101 tcagtgttct gtaaggtgcc ctctcacccc tgccattctg gggcccttag gaaatgactc
     2161 ggggtggggg gcgcagagca gggttctggc attgtacccc gcacacacaa taaacgacag
     2221 aaccatggac ttctgga
//
LOCUS       XR_004346901             889 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743821
            (LOC116743821), ncRNA.
ACCESSION   XR_004346901
VERSION     XR_004346901.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..889
                     /gene="LOC116743821"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116743821"
     ncRNA           1..889
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743821"
                     /product="uncharacterized LOC116743821"
                     /db_xref="GeneID:116743821"
ORIGIN      
        1 gctgcccaag ttgcagtgtg gggcctctgc tcccccctcc aaatcctgcc cttccttccc
       61 agatcagctc cggttcctcc tcctccatgg agccctctct gattgctgca gcccacacag
      121 gggggcctgc ccagatgccc gctgcaccaa ctggctttgc ccaccccagc acctgagtgt
      181 gacatggtcc tcctgggtcc tctctcccct atcagactgg cagttccctg ggttaggggt
      241 tcgcctgtct ccccgttaga ttgggggctc ctgaagtgga gattcctgcc cggcttgtgt
      301 cacccatcct ggccgacggg gttccagtag ggctgccagg aagttaccag cactgagatc
      361 ccagggacag aaggagcttc agagatgatc caatgccttg aatcccatac ctgccagggc
      421 accccagtca cttggaggga cttgcaacaa acacagactc ttctcatgta ccccaagatt
      481 ctgatctggg gtctagggaa gggaccagga atcggctccc atcaggtccc cactcagcca
      541 gcccacaggc cagtgttcgg aaaccactca tcactcagca gtttcctggt gctcacaggg
      601 ccggaggtga gggtgtggac gtgcggtgct ggctggctgg ccgatgctgg ctatgagttg
      661 gagccagcag ctgcccgaga ccagagacgg gtttgggatg tcaacagggc ggccaattat
      721 cctgttactg tacacaggtt ggggcagccg aggcaacggt gggcccaggt ccacgcagag
      781 cagcaagcct ccacctcacc gctcacaaca cacacatgct cctagttggg attaacttgg
      841 ctgacatcta ggggcagagg gtggctcagg gcctcaggat tttaacaag
//
LOCUS       XM_032612874            3303 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc receptor like 3 (FCRL3), transcript
            variant X1, mRNA.
ACCESSION   XM_032612874
VERSION     XM_032612874.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3303
                     /gene="FCRL3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743823"
     CDS             167..2347
                     /gene="FCRL3"
                     /codon_start=1
                     /product="Fc receptor-like protein 3 isoform X1"
                     /protein_id="XP_032468765.1"
                     /db_xref="GeneID:116743823"
                     /translation="MFLWLLLLILAPGRDQSGVTPKAFLLLNPPWSTNFNNDRVTLTC
                     RDSLSPAQGDISWYHNDHLLDNISEEIQIHKTGYYKCKTQRSSPSDPVHMDFLPDRLI
                     IQAPHPVFEGDDVVLRCRGREATSETVFYKNKKEIRKSYISNFTLNSVSRDNDKYYCT
                     ASRKGFWGVRRDISKPLTIQVQELFPPPVLTARPSQPIEGRPVTLKCETWLPPQRSYI
                     QLQFCFFREDQALGSGWSSSPELNLPNMWSENSGSYWCQAETVTHHVRKRSLRSQIHV
                     QRIPVSDVNLEIQPPEGQLIEGENLLLICSVANGTGTVTFSWHREGTVRSLGTKTQRS
                     LSAELQILTVKEHDAGRYYCAADNIHGPIVSKLIRVTLRIPVSRPVLTLRAPGAQVVV
                     GDMMELHCEARRGSPPILYRFYHDGVSLGSSSVPSGRAFFKFSLTAEHSGNYSCEADN
                     GLGVQLSDRVTLSVTVPVSHPVFTFHPTGAQAIVGDVLELRCEAQRGSPPILYWFYHK
                     NVTLGSILDPFGGGASFNLTLMAEHSGNFSCGADNGLGVQRSEMVTLSVTGPSSNKIM
                     LITEGVTAGLLSILGLAATAALVCYFRTQRNSGGLSTTGTPSYSPREFKEPSRTSNTD
                     PQEPTYSEPPDPMEQQPVCSNVDLGESNLVYSQICSIQDTKENSANSPKKHWEHKEPE
                     VIYSELKKAHLDDSAGLAINQDRDLEDAAENYENVPCALSAIDN"
     misc_feature    233..454
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    284..298
                     /gene="FCRL3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    326..340
                     /gene="FCRL3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    371..385
                     /gene="FCRL3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    398..415
                     /gene="FCRL3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    431..442
                     /gene="FCRL3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    467..709
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    509..523
                     /gene="FCRL3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    545..559
                     /gene="FCRL3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    632..661
                     /gene="FCRL3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    686..697
                     /gene="FCRL3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    728..994
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1034..1264
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: ig; pfam00047"
                     /db_xref="CDD:395002"
     misc_feature    1067..1081
                     /gene="FCRL3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1109..1123
                     /gene="FCRL3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1175..1189
                     /gene="FCRL3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1217..1234
                     /gene="FCRL3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1259..1276
                     /gene="FCRL3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1307..1558
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1577..1795
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
ORIGIN      
        1 gtggcatttc agagaaccca gcacagcctt ggagacattt ctccagagag agttgacctg
       61 ctagaagatc tcatctgagt acctcccttc tgtcctcttt cgtggatgag aaagaagcct
      121 ggcttgtgag agagactttc cctgccctca gccaggccac atccccatgt ttctgtggct
      181 gctgctgctg atcctggctc ctggaagaga tcaatcagga gtaaccccaa aagcttttct
      241 tctcctcaat cctccatggt ccacaaactt caacaatgac agagtgactc tcacatgcag
      301 agattccctt tctccagccc aaggagacat atcttggtat cataatgatc atttgttgga
      361 taatatatct gaagagatcc aaatacacaa gactggatat tacaaatgca agactcaaag
      421 atcttctccc agtgaccccg tacatatgga ttttttacct gacagactga tcatccaggc
      481 tccacaccct gtctttgaag gagatgatgt tgttctgaga tgccggggga gagaagcaac
      541 aagtgaaaca gttttctaca aaaataaaaa agaaattagg aagagttata tatcaaactt
      601 cacactaaat tcagtctcca gggacaatga caaatattat tgtactgctt ctaggaaagg
      661 cttttgggga gtaaggagag acatttcaaa acctctaaca attcaagttc aagagctgtt
      721 tccccctcct gtgctgacag ccagaccctc ccagcccata gaggggagac cagtgaccct
      781 gaaatgtgag acttggctcc ctccacagcg gtcatacatt cagcttcaat tctgcttctt
      841 cagagaagac caggccttgg gatcaggctg gagcagctcc ccagagctca atttacctaa
      901 catgtggagt gaaaactcag ggtcttactg gtgccaggca gagacagtga ctcaccatgt
      961 caggaaaaga agcttgagat cccagataca tgtgcagaga atccctgtgt ctgatgtaaa
     1021 tctagagatc cagccccccg aggggcagct gattgaagga gaaaatctgc tccttatctg
     1081 ctcagtagcc aacggtacag ggactgtcac attctcctgg cacagagagg gcacagtgag
     1141 aagtttggga acaaagaccc agcgttcctt gtcggcagag ctgcagatac tcactgtgaa
     1201 ggagcatgat gctgggagat attactgtgc agctgacaac attcacggtc ccatcgtcag
     1261 taaactgatt agagtcacac tgagaattcc agtgtctcgc cctgtcctca ctctcagggc
     1321 tcctggggcc caggttgtgg tgggggacat gatggagctt cactgtgagg cccggagagg
     1381 ctctcccccg atcctgtacc gattttatca tgatggtgtc agcctgggga gcagctcagt
     1441 tccctctgga agagcattct tcaaattctc tctgactgca gaacattctg gaaactactc
     1501 ctgtgaggct gacaatggcc tgggggtcca gcttagtgac agagtgactc tcagtgtcac
     1561 agttccagtg tctcatcctg tcttcacctt ccaccctact ggggcccagg ctatagtggg
     1621 agatgtgtta gagcttcgct gtgaggccca aagaggctct cccccaatcc tgtactggtt
     1681 ttatcacaag aatgtcaccc tggggagcat cttggacccc tttggaggag gagcatcctt
     1741 caacctcact ctgatggcag agcattctgg gaacttctct tgtggggctg acaatggcct
     1801 gggggtccag cgcagtgaga tggtgacact cagcgtcaca gggccttcca gtaacaaaat
     1861 aatgcttatc accgaggggg tcactgcagg gctgctaagc atccttggcc ttgctgctac
     1921 tgctgctctg gtgtgttact tcaggaccca aaggaattca ggaggacttt ccaccactgg
     1981 aacacctagt tacagtccca gggagtttaa ggaaccttct agaacctcca acacagaccc
     2041 ccaagaaccc acttactctg aaccaccaga cccaatggaa cagcagccag tgtgcagcaa
     2101 tgtggatctt ggtgagagta acctggttta ttcccagatc tgcagcatcc aagatacaaa
     2161 agaaaattca gcaaattcac caaagaaaca ctgggagcat aaggagcctg aagtcatcta
     2221 ttcagagttg aagaaggcac atctagatga ttctgcaggg ctggccatca atcaagacag
     2281 ggaccttgaa gatgctgcag aaaactatga gaatgtccca tgtgcattgt cagccataga
     2341 caactagctc tgtacccata gtggctcaca gagaccctga gaagcagcct gtgtcattat
     2401 ctctgttatc tccagccatg ctacctcctt ccccccaggg ctcagcatcc caagaggctg
     2461 ggctataggg gacatcaggc tgggtgaaag ttctgccaac ttcctctgtg cctgagtctg
     2521 tgtattatct aggaacacag tgagcagcat ttgagtaaat tctgcattct tttcacagta
     2581 gagacacatg tgaaggcagg gcagttgggc cttcagttcc caggcctgtt gatgagaaag
     2641 gagaaatggt ctagccagga tcacgaggtt gcaatcgtga ccagttgatc taagtgggat
     2701 caaaatcttt ttatatacta tctctgcata aacagtttgt tctaaacatc ttgttttcat
     2761 ttttgtgggg ttgatagtgg catggctgat gttctgttgt acatgctttg ttccagctgc
     2821 caaattggaa acaaccaaaa agctttgttc tatccacatg tatactattt cttcatgaac
     2881 tatacatcag tattaagatt ttttaaaata acacattcta tttaatggga gagagcttcc
     2941 aaattgtctg attagatagt ataatggact gaattgtatt ctctcaaaat tcaatgtgac
     3001 tatacttgga gataggacct ttaaggagat aattatggtt aaatgaggtc ataagggtgg
     3061 cccctaattg aattggactg gtgtctttct aagaagaaga ggagacacca gagccctctg
     3121 tatctttctt catgcacaca gaggaaaagc catgtgaaga cacagcaaga aagatatctg
     3181 caaagcctga aggtggcaag aagagaggtc tcgccagaaa ccaactctgc cagcaccttg
     3241 atcttggact tctagaactg tgagaaaata gatatctgat gtttaagcca cctagtctgt
     3301 ggt
//
LOCUS       XM_032612881            3101 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Fc receptor like 3 (FCRL3), transcript
            variant X2, mRNA.
ACCESSION   XM_032612881
VERSION     XM_032612881.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3101
                     /gene="FCRL3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116743823"
     CDS             223..2145
                     /gene="FCRL3"
                     /codon_start=1
                     /product="Fc receptor-like protein 3 isoform X2"
                     /protein_id="XP_032468772.1"
                     /db_xref="GeneID:116743823"
                     /translation="MRPVVMCQHQWYCYSEVTPVALVGVTPKAFLLLNPPWSTNFNND
                     RVTLTCRDSLSPAQGDISWYHNDHLLDNISEEIQIHKTGYYKCKTQRSSPSDPVHMDF
                     LPDRLIIQAPHPVFEGDDVVLRCRGREATSETVFYKNKKEIRKSYISNFTLNSVSRDN
                     DKYYCTASRKGFWGVRRDISKPLTIQVQELFPPPVLTARPSQPIEGRPVTLKCETWLP
                     PQRSYIQLQFCFFREDQALGSGWSSSPELNLPNMWSENSGSYWCQAETVTHHVRKRSL
                     RSQIHVQRIPVSDVNLEIQPPEGQLIEGENLLLICSVANGTGTVTFSWHREGTVRSLG
                     TKTQRSLSAELQILTVKEHDAGRYYCAADNIHGPIVSKLIRVTLRIPVSHPVFTFHPT
                     GAQAIVGDVLELRCEAQRGSPPILYWFYHKNVTLGSILDPFGGGASFNLTLMAEHSGN
                     FSCGADNGLGVQRSEMVTLSVTGPSSNKIMLITEGVTAGLLSILGLAATAALVCYFRT
                     QRNSGGLSTTGTPSYSPREFKEPSRTSNTDPQEPTYSEPPDPMEQQPVCSNVDLGESN
                     LVYSQICSIQDTKENSANSPKKHWEHKEPEVIYSELKKAHLDDSAGLAINQDRDLEDA
                     AENYENVPCALSAIDN"
     misc_feature    307..528
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    358..372
                     /gene="FCRL3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    400..414
                     /gene="FCRL3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    445..459
                     /gene="FCRL3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    472..489
                     /gene="FCRL3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    505..516
                     /gene="FCRL3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    541..783
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    583..597
                     /gene="FCRL3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    619..633
                     /gene="FCRL3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    706..735
                     /gene="FCRL3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    760..771
                     /gene="FCRL3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    802..1068
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig_2; pfam13895"
                     /db_xref="CDD:464026"
     misc_feature    1108..1338
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: ig; pfam00047"
                     /db_xref="CDD:395002"
     misc_feature    1141..1155
                     /gene="FCRL3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1183..1197
                     /gene="FCRL3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1249..1263
                     /gene="FCRL3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1291..1308
                     /gene="FCRL3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1333..1350
                     /gene="FCRL3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1375..1593
                     /gene="FCRL3"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:464046"
ORIGIN      
        1 atctgagtac ctcccttctg tcctctttcg tggatgagaa agaagcctgg cttgtgagag
       61 agactttccc tgccctcagc caggccacat ccccatgttt ctgtggctgc tgctgctgat
      121 cctggctcct ggaagagatc aatcaggtca gttttccctt ttctctgttc ctcctggtct
      181 ctgggcattg gtcctcccag ccagcactgc ctggacccat aaatgaggcc tgtggtgatg
      241 tgccaacatc agtggtattg ctactccgag gtcacacctg ttgcattagt gggagtaacc
      301 ccaaaagctt ttcttctcct caatcctcca tggtccacaa acttcaacaa tgacagagtg
      361 actctcacat gcagagattc cctttctcca gcccaaggag acatatcttg gtatcataat
      421 gatcatttgt tggataatat atctgaagag atccaaatac acaagactgg atattacaaa
      481 tgcaagactc aaagatcttc tcccagtgac cccgtacata tggatttttt acctgacaga
      541 ctgatcatcc aggctccaca ccctgtcttt gaaggagatg atgttgttct gagatgccgg
      601 gggagagaag caacaagtga aacagttttc tacaaaaata aaaaagaaat taggaagagt
      661 tatatatcaa acttcacact aaattcagtc tccagggaca atgacaaata ttattgtact
      721 gcttctagga aaggcttttg gggagtaagg agagacattt caaaacctct aacaattcaa
      781 gttcaagagc tgtttccccc tcctgtgctg acagccagac cctcccagcc catagagggg
      841 agaccagtga ccctgaaatg tgagacttgg ctccctccac agcggtcata cattcagctt
      901 caattctgct tcttcagaga agaccaggcc ttgggatcag gctggagcag ctccccagag
      961 ctcaatttac ctaacatgtg gagtgaaaac tcagggtctt actggtgcca ggcagagaca
     1021 gtgactcacc atgtcaggaa aagaagcttg agatcccaga tacatgtgca gagaatccct
     1081 gtgtctgatg taaatctaga gatccagccc cccgaggggc agctgattga aggagaaaat
     1141 ctgctcctta tctgctcagt agccaacggt acagggactg tcacattctc ctggcacaga
     1201 gagggcacag tgagaagttt gggaacaaag acccagcgtt ccttgtcggc agagctgcag
     1261 atactcactg tgaaggagca tgatgctggg agatattact gtgcagctga caacattcac
     1321 ggtcccatcg tcagtaaact gattagagtc acactgagaa ttccagtgtc tcatcctgtc
     1381 ttcaccttcc accctactgg ggcccaggct atagtgggag atgtgttaga gcttcgctgt
     1441 gaggcccaaa gaggctctcc cccaatcctg tactggtttt atcacaagaa tgtcaccctg
     1501 gggagcatct tggacccctt tggaggagga gcatccttca acctcactct gatggcagag
     1561 cattctggga acttctcttg tggggctgac aatggcctgg gggtccagcg cagtgagatg
     1621 gtgacactca gcgtcacagg gccttccagt aacaaaataa tgcttatcac cgagggggtc
     1681 actgcagggc tgctaagcat ccttggcctt gctgctactg ctgctctggt gtgttacttc
     1741 aggacccaaa ggaattcagg aggactttcc accactggaa cacctagtta cagtcccagg
     1801 gagtttaagg aaccttctag aacctccaac acagaccccc aagaacccac ttactctgaa
     1861 ccaccagacc caatggaaca gcagccagtg tgcagcaatg tggatcttgg tgagagtaac
     1921 ctggtttatt cccagatctg cagcatccaa gatacaaaag aaaattcagc aaattcacca
     1981 aagaaacact gggagcataa ggagcctgaa gtcatctatt cagagttgaa gaaggcacat
     2041 ctagatgatt ctgcagggct ggccatcaat caagacaggg accttgaaga tgctgcagaa
     2101 aactatgaga atgtcccatg tgcattgtca gccatagaca actagctctg tacccatagt
     2161 ggctcacaga gaccctgaga agcagcctgt gtcattatct ctgttatctc cagccatgct
     2221 acctccttcc ccccagggct cagcatccca agaggctggg ctatagggga catcaggctg
     2281 ggtgaaagtt ctgccaactt cctctgtgcc tgagtctgtg tattatctag gaacacagtg
     2341 agcagcattt gagtaaattc tgcattcttt tcacagtaga gacacatgtg aaggcagggc
     2401 agttgggcct tcagttccca ggcctgttga tgagaaagga gaaatggtct agccaggatc
     2461 acgaggttgc aatcgtgacc agttgatcta agtgggatca aaatcttttt atatactatc
     2521 tctgcataaa cagtttgttc taaacatctt gttttcattt ttgtggggtt gatagtggca
     2581 tggctgatgt tctgttgtac atgctttgtt ccagctgcca aattggaaac aaccaaaaag
     2641 ctttgttcta tccacatgta tactatttct tcatgaacta tacatcagta ttaagatttt
     2701 ttaaaataac acattctatt taatgggaga gagcttccaa attgtctgat tagatagtat
     2761 aatggactga attgtattct ctcaaaattc aatgtgacta tacttggaga taggaccttt
     2821 aaggagataa ttatggttaa atgaggtcat aagggtggcc cctaattgaa ttggactggt
     2881 gtctttctaa gaagaagagg agacaccaga gccctctgta tctttcttca tgcacacaga
     2941 ggaaaagcca tgtgaagaca cagcaagaaa gatatctgca aagcctgaag gtggcaagaa
     3001 gagaggtctc gccagaaacc aactctgcca gcaccttgat cttggacttc tagaactgtg
     3061 agaaaataga tatctgatgt ttaagccacc tagtctgtgg t
//
LOCUS       XR_004346902             524 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743834
            (LOC116743834), ncRNA.
ACCESSION   XR_004346902
VERSION     XR_004346902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..524
                     /gene="LOC116743834"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116743834"
     ncRNA           1..524
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743834"
                     /product="uncharacterized LOC116743834"
                     /db_xref="GeneID:116743834"
ORIGIN      
        1 ccttggcttc cccttttcaa aatctctggg ccacgcttat tggtgccact gtggacagcc
       61 tctgtcctca gatccaagcg caaccatcaa tttccaagag gaactgcttc tgagtctcct
      121 ggaacaagac tccatgctgc tgtggatttg ctgctggttc tagttcctgg ctgaggagag
      181 tcctgtgagt tcctctttgt ttcttcttca tcgccttgga gttatagtgc ccggcacagg
      241 agcctgggga aacttgtacc aatccttctc cccacagctg cagggaaggg tccccctttc
      301 ccctaggccc agtcattcta gtcctatcta cctctccgtt cctggcacct tcctgctctg
      361 ctctgctcaa gagttgactt tctgacctct tctgcaaaag gaggaggacg cacctgacaa
      421 aggaaagaca ggccctgata ctcataaaaa atcatacgaa ggggcttccc tggtggcgca
      481 gtggttgaga atctgcctgc caattcaggg gacacgggtt cgag
//
LOCUS       XM_032612902            2923 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hydroxysteroid 17-beta dehydrogenase 7
            (HSD17B7), mRNA.
ACCESSION   XM_032612902
VERSION     XM_032612902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2923
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2923
                     /gene="HSD17B7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 5 long SRA reads, 11
                     Proteins, and 88% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743840"
     CDS             117..1121
                     /gene="HSD17B7"
                     /codon_start=1
                     /product="3-keto-steroid reductase"
                     /protein_id="XP_032468793.1"
                     /db_xref="GeneID:116743840"
                     /translation="MRKVVLVTGASSGVGLALCRRLLEEDHELHLCLACRNMSKAEAV
                     RTGLLASHPTAEVSTVQVDVSSLPSVFQASKELKQRFQRFDYVYLNAGIMPNPQLNIK
                     ALFCGLFSRKAIHIFSTAEGVLTQSEKITADGLQEVFATNVFGHFILIRELESLLCHS
                     DSPSQLIWTSSRNAVKSNFNLEDIQHSKGQEPYSSSKYAIDLLSVALNRNFNQRGLYS
                     SVACPGTVLTNLTYGIMPPFVWMLIMPIIWLFRFFANAFTLTPYNGTEALVWLFHQKP
                     ESLDPLVKYLSATTGFGSNYVTSKKIDLDEDTAEKFYQNLLELEKDIRVTIQKSKNQS
                     "
     misc_feature    120..956
                     /gene="HSD17B7"
                     /note="3-keto steroid reductase, classical (c) SDRs;
                     Region: 3KS_SDR_c; cd08941"
                     /db_xref="CDD:187645"
     misc_feature    order(141..143,147..158,219..227,264..272,384..392,
                     537..539,621..629,693..695,705..707,783..794,798..803)
                     /gene="HSD17B7"
                     /note="putative NAD(P) binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187645"
     misc_feature    order(540..542,627..629,693..695,705..707)
                     /gene="HSD17B7"
                     /note="active site"
                     /db_xref="CDD:187645"
ORIGIN      
        1 ccctgattga agggctgggg gcgcggccgg ggcggggata cgggtcaaag tataatactt
       61 gtgagaagcc ttgcgcggtt cctgcttcag ggtgcgtggt gatagggtgc gcggccatgc
      121 ggaaagtggt tttggtcacc ggggcgagca gtggcgttgg cctagccctc tgcaggcggt
      181 tgctggagga agaccatgag cttcacctgt gcttggcgtg caggaacatg agcaaagcgg
      241 aagccgtccg cactggtctg ctggcctccc accccaccgc cgaggtctcc accgtgcagg
      301 tggatgtcag cagcctgccg tccgtgttcc aggcctccaa ggagctcaag caaaggtttc
      361 agagatttga ctatgtatat ctaaatgctg ggatcatgcc taatccacag ctaaatatca
      421 aagcactttt ctgtggcctc ttttcaagaa aagcgattca tatattctct acagctgaag
      481 gagtgctgac ccagagtgaa aagattactg ccgatggcct ccaggaggtg tttgcaacca
      541 atgtctttgg ccactttatt ctgattcggg aactggaatc tctcctgtgt catagtgaca
      601 gtccatctca gctcatctgg acatcatctc gtaatgcagt gaaatctaat ttcaaccttg
      661 aggacatcca gcacagcaaa ggccaggagc cctacagctc ttccaaatat gctattgacc
      721 ttctgagtgt ggctttgaac aggaacttca accagcgggg tctgtattcc agtgtagcgt
      781 gcccaggtac agtgttgacc aatttgacat atggaattat gcctcccttt gtgtggatgt
      841 tgatcatgcc aatcatatgg ctgttccgct ttttcgcaaa tgctttcacg ttgacaccat
      901 acaatggaac agaagcattg gtctggcttt tccaccaaaa gcctgagtct ctcgatcctc
      961 tggtgaaata tctgagtgcc accactggct ttggaagcaa ttacgtaacg tccaaaaaga
     1021 tagacctaga tgaagacact gctgaaaaat tttaccaaaa cttactggaa ctggaaaagg
     1081 atattagggt caccattcaa aaaagcaaaa accagagctg aaaatggtgc tctctgagca
     1141 ccattttcat gccttctctg gattctggag cacctgggtt tctgagttgg atggtgtgca
     1201 tttgtggtaa actgtgagtt ctgattttct ctttgtttca gaattacctc tatgactgtg
     1261 tgtgtgtttg tgcgtgtgag aaaaagattg ataaaatata atatattctt aagaatggtg
     1321 ttatatcaaa attgtcctaa gtgtccatca ttggatgaat ggataaagaa tatgtggcac
     1381 atatatacaa tggaatatta ctcagccata aaaagaaacg aaattgagct atttgtaatg
     1441 aggtggatgg acctagagtc tgtcatacag agtgaagtaa gtcagaaaga gaaagacaaa
     1501 taccgtatgc taacacatat atatggaatt taagaaaaaa aaatgtcatg aagaacctag
     1561 gggtaagatg ggaataaaga cacagatcta ctagagaatg gacttgaggg tatggggagg
     1621 gggaagggta agctgtgaca aagcaagaga gtggcatgga catacataca ctagcaaacg
     1681 taaaataggt agtgggaagc agccgcatag cacagggaga tcagctcagt gctttgtgac
     1741 cacctagagg ggtgggaggg agacacaaga gggaagagat atgggaacat gtgtatatgt
     1801 ataactgatt cactttttta taaagcagaa actaacacac cactgtaaag caattatact
     1861 ccaataaaga tgtaaaaaaa aaaattgtgc tagtcacaat ttgtttattc tgtgaactgc
     1921 agccaaagct acacttcatg ggatgaggtg tagacttgaa taatcgtgac ataaacacac
     1981 actggttctc cttttcacct gccccagcag gaggaaatac tgcccattct ctgagtgacc
     2041 atcttagcct tgttcctttc aagtagtttt cctaggtctt gtaccttatt tcttcttcca
     2101 catgctgctt ttaccaatcc taatacagat gcccatgtaa ttaatcatag taacaaagta
     2161 tatatgtatt tgggccactt gaattatttt tttcttattt taaaaatgtc ttttgagatt
     2221 gatttaatcc atgttaatag tgggcctgac ctttaacaca atttgcaaat ttgtttatta
     2281 cttacccact cgttttcatg acattttagt ggatgtaatc ttgcagcaaa aatgatttat
     2341 tcagattgtt tcaatgaaat tttccaattg aataattact ggtggaatgt ctcctggtat
     2401 cagtagtggt cgaaagtggt taggacttag tttgcatgat atgaagacaa aatgctaaga
     2461 tgcttagatg tttcaaccaa cacctgtaat ataacagtta cagtttgaat gagttaatgt
     2521 gaaaaattat atgtaaatat aatttcttta catttctaaa gtatggattt ttggttatac
     2581 tttaagtttg ttgctaaaga tatttttaat aacaataaac atgtgaaaat gagggctgaa
     2641 cactgtcttc aagaaagaag ggtaaagttg gagagctgaa agcagagctg gtttttgatc
     2701 ttctgttcac ttgctgttaa ttgggaagaa ggactttgtt ttggatctca aactcttcat
     2761 ctgtgaaggt attatctttc tgcttcctct gttcatgggt atgaagtgag cattaaatgc
     2821 aataatatgt gaatgaataa agagcatgtt ttgagaatga tgactacaaa gtttttatta
     2881 gagattaata agccagagtg tcatagttga aatattactg tgt
//
LOCUS       XM_032612915            1803 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein FAM71A-like (LOC116743846), mRNA.
ACCESSION   XM_032612915
VERSION     XM_032612915.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1803
                     /gene="LOC116743846"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 18% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743846"
     CDS             1..1803
                     /gene="LOC116743846"
                     /codon_start=1
                     /product="protein FAM71A-like"
                     /protein_id="XP_032468806.1"
                     /db_xref="GeneID:116743846"
                     /translation="MSGDSLLPYHTAQSSTGVGLFNTTTGKLQQQLHKGEYDMFKDAP
                     VFESDFIQITKRGDLLDVHNCVCMVTVGITSSSPVLPLPDTMLLARWATGCDDHAEHS
                     QAAKGKSHEAAKTLELTRLLPLTLVSISTHNREKQQLRVKFATGRSWYLQLCAPLDAQ
                     EDLFTSWEELIYLLRPPVEGLSCTCAVPAWDMICMPVFEEQDDGRSPAVEDFQAMWDQ
                     DQVSICSLHTCSEVAGATSAAFTGGEEIQLDSHKPDTMPDVATAKAKPTVLDKASASR
                     ATTKVETAGVAGGTAAGALSVAVIKSPAPEEQSTATAATASNGPGGSKTSIATGGTAR
                     TSLRSRKTVLRTIQGMLAGAANYSGYASSTSTSLSPEAGMTVVGAEPTSKTVEGRADE
                     EDEGTLISTLPQEGKVSEQDGSSQRVSQARKGRRERREHWGEDRALTSLSLCSSVESH
                     HKAAGNKTIQKAAGPCSGGRRATRDDQKDKGHGSPGGSEQGTAHKGIGRAPITNESRT
                     SHKSGRSLSTASSGPSTERLSRISSFFRNIRDSLTAKPVASSRDKYVSILAKPVEGTR
                     MEAIVETAESGQGLEITGGVTSDTMEPLTAEAHQ"
     misc_feature    343..537
                     /gene="LOC116743846"
                     /note="Protein of unknown function (DUF3699); Region:
                     DUF3699; pfam12480"
                     /db_xref="CDD:463601"
ORIGIN      
        1 atgagtgggg actctctgct cccgtatcac acggcccaga gcagcaccgg ggtgggcctg
       61 ttcaacacca ccacggggaa gctgcagcag caactgcaca agggtgaata cgacatgttc
      121 aaggacgccc cggtattcga gagcgacttc atccagatca cgaagagggg agacctgctt
      181 gacgtgcaca actgtgtctg catggtgacc gtgggcatca catccagcag ccccgtcctc
      241 ccactcccag acaccatgct gctggcccga tgggccaccg gctgtgacga tcacgctgag
      301 cacagccagg ccgccaaggg caagagccac gaggctgcaa agaccttaga gctcaccagg
      361 ctccttcccc tgacgctcgt gagcatctcc actcacaatc gtgagaaaca acagctgcgc
      421 gtgaagtttg ccactggccg ctcctggtac ctgcagctgt gcgcccctct ggacgcgcag
      481 gaagacctct tcacctcttg ggaagagctg atttacctcc tgcgaccacc agtggagggt
      541 ctcagctgca cctgcgccgt tccagcctgg gacatgatct gcatgcctgt gttcgaggag
      601 caggacgacg gcaggagccc ggcagtggag gatttccaag caatgtggga tcaggaccag
      661 gtgagcatct gcagcctcca cacgtgctct gaggtggccg gggccacgtc cgcagctttt
      721 actggtgggg aggagatcca actggactcc cacaagcccg ataccatgcc cgatgtggcc
      781 actgcaaaag caaaacctac agtgcttgac aaagcgtcag catcgcgggc aacgacaaag
      841 gtggagacag caggggtggc aggaggcacc gcagcgggtg ctttgagcgt ggcagtgatc
      901 aagtctcctg cccctgaaga gcagagcacg gccacagcag ccacagccag caacggtccg
      961 ggaggaagca aaaccagcat agccactggg ggcaccgcca gaacatccct gaggagcagg
     1021 aaaacggtgc tgcgaacaat tcagggtatg ctggcaggtg ccgcgaacta ttcagggtat
     1081 gcttccagca catccaccag cctctcccca gaggccggca tgactgtggt cggagcagaa
     1141 cccaccagca agactgttga aggaagagcc gacgaggagg acgaagggac cctcatctca
     1201 accttgccac aggaaggcaa agtgagtgaa caggatggca gctcacagag ggtgtcccag
     1261 gcccgcaagg gaagaaggga gagaagagag cactggggag aggacagagc tcttacgagc
     1321 ctctcgctct gcagttcagt ggaaagccac cacaaggcag cggggaacaa gaccatccag
     1381 aaagcagctg gcccgtgctc aggcggccgc agagccacta gagatgacca aaaggacaaa
     1441 ggccacggca gcccgggggg cagcgagcag ggcactgctc acaaaggcat cggccgtgct
     1501 cccatcacca acgagtccag gacctcgcac aaatcgggca ggagcttatc tacagcgagt
     1561 tcaggtccct ccaccgagag actcagcagg atcagctctt tcttcaggaa catcagagac
     1621 agtctcactg caaagccagt ggcctcctca cgcgataaat atgtgagcat cctggcgaag
     1681 ccagtggaag ggacccgaat ggaggccatc gtagagacag cagagagtgg ccaggggctg
     1741 gagatcactg gaggtgtgac atctgacacc atggagccac tgaccgctga agcccatcaa
     1801 tag
//
LOCUS       XM_032612929             750 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ribosomal protein S8 (RPS8), mRNA.
ACCESSION   XM_032612929
VERSION     XM_032612929.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..750
                     /gene="RPS8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 2 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743853"
     CDS             71..697
                     /gene="RPS8"
                     /codon_start=1
                     /product="40S ribosomal protein S8"
                     /protein_id="XP_032468820.1"
                     /db_xref="GeneID:116743853"
                     /translation="MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIH
                     TVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIV
                     LIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISS
                     LLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK"
     misc_feature    71..688
                     /gene="RPS8"
                     /note="40S ribosomal protein S8; Provisional; Region:
                     PTZ00148"
                     /db_xref="CDD:240292"
ORIGIN      
        1 gaggcggggc tacgttttac aaacggaacc gtgacgcttt gcgttttctc ttttcagcca
       61 gcgccgagcg atgggcatct ctcgggacaa ctggcacaag cgccgcaaga ccgggggcaa
      121 gagaaagccc taccacaaga agcggaagta tgagctggga cgccccgctg ccaacactaa
      181 gattggcccc cgccgcatac acacagtccg tgtgcgggga ggcaacaaga agtaccgggc
      241 cttgaggctg gacgtgggga acttctcctg gggctccgag tgctgtacac gcaagacaag
      301 gatcattgat gttgtctaca atgcatctaa caatgaactg gtccgtacca agaccctggt
      361 gaagaactgc atcgtgctca ttgacagcac accgtaccga cagtggtacg agtcccacta
      421 tgcactgccc ctgggccgca agaagggggc caagctgact cctgaggagg aagagatttt
      481 aaacaaaaaa cgatcaaaga aaattcagaa gaaatatgat gaaaggaaaa agaatgccaa
      541 aattagcagt cttctagagg agcagttcca gcagggcaag cttcttgctt gcatcgcctc
      601 aagaccaggc cagtgtggcc gagcagatgg ctatgtgcta gagggaaagg agctggagtt
      661 ctatctgagg aaaatcaagg cccggaaagg caaataaacc ctcttccttc ctatcttagc
      721 tcatgttata aaggtgttta ttgttctatg
//
LOCUS       XM_032612943            1818 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf94 homolog (C1H1orf94),
            mRNA.
ACCESSION   XM_032612943
VERSION     XM_032612943.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1818
                     /gene="C1H1orf94"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins"
                     /db_xref="GeneID:116743858"
     CDS             1..1818
                     /gene="C1H1orf94"
                     /codon_start=1
                     /product="uncharacterized protein C1orf94 homolog"
                     /protein_id="XP_032468834.1"
                     /db_xref="GeneID:116743858"
                     /translation="MRGGGRRSPCLRALGGQRGFRKERKRMASGNGLASSSALVAKRP
                     SALGPFPRYIWIHQDTPQDSLDKTCHEIWKRVQGLPEALQPRTSKEQLSAPMAGTPRD
                     NGLSFQEEPLELTSGRDEISLLVEQEFLSLTKEHLIPVTESSGELKAPGSSLEGPRQP
                     APCLLVPSLVAGSSERPGASITAGYKLLEPKVAVPIIGSRQDCSSTMSTVTGTLRTAK
                     VKSAKGTEDRGNSLGTSNSEIGKLLAQFPLKSPETSKAPDNKTVLEESTAIKDFLQSS
                     MFSGPGPGEPAELGPFLLPTPPPPPAPPDKLEKPPRLPAQRKQLPVFAKICSKPEADP
                     AMEGHKLMERNPGAKELTKGQESLFLSQWSQRRKDTCGKEGGSDPMGSTSMVLPAKKP
                     AWPAKKNLLCEFLGATKNPSRHLKLRSKVEVDGLELKLNPPVTGADKNNLEYTGNVFT
                     PCFATTLTSATLNQPLWLNLNYPLLPVFTNPSTFPQYQGLYPQQAARMPYQQTLQPQL
                     GCYSRQVMPYNNPQQMGQQIFHSSYNPLLSYIPFVQSNYPYPQRTPQKLARNPRDPSP
                     MAGDGLQYPFPQAYGFGSTSGGPLMNSPYFPSSGNGIHF"
     misc_feature    604..1815
                     /gene="C1H1orf94"
                     /note="Domain of unknown function (DUF4688); Region:
                     DUF4688; pfam15752"
                     /db_xref="CDD:464846"
ORIGIN      
        1 atgaggggtg gtggtagacg gtccccctgt cttcgagccc tgggtggaca aaggggcttc
       61 cgaaaagaga ggaagaggat ggccagcggg aatggtctgg cttcgtcctc agccctggtg
      121 gccaagcgcc cctccgccct gggcccgttc cccaggtaca tctggatcca ccaggacaca
      181 ccccaagaca gcttagacaa gacttgccat gaaatctgga agagagttca gggcctgccc
      241 gaggccttgc agcccaggac ctccaaggag cagctctctg cccccatggc tggcacccca
      301 agagacaatg gcctcagctt ccaagaagag cctctggaac tcaccagtgg cagagatgag
      361 atctccttgc tggtggaaca ggagttcttg agcctcacca aagagcacct catcccagtc
      421 acagagagct ccggggagct gaaggcaccc ggcagctccc tcgaggggcc caggcagccg
      481 gctccctgcc ttcttgtgcc ttcgctggtg gcgggcagca gtgaacgccc aggagcctcc
      541 atcactgccg gttacaagct cctggagcca aaggtggcag tgcccattat cggcagccgg
      601 caggactgca gttccaccat gtctacggtc acgggcaccc tgcgtactgc caaggtcaag
      661 agtgccaagg ggacagagga caggggcaac agcctgggga cctccaactc ggagatcggc
      721 aagctcctgg ctcagttccc actgaagtcc ccggaaacgt ccaaggcccc cgacaacaag
      781 acggtgttgg aggagagcac ggccatcaag gacttcctgc agagcagcat gttcagtggc
      841 cctggacccg gggagcccgc ggagctgggc ccattcctgc tgccaactcc cccgcctcct
      901 ccagcacctc ccgacaagct cgaaaagccc cccagactcc ctgctcagag gaagcagctg
      961 ccagtgtttg ccaagatctg ctccaagccc gaggctgacc ctgccatgga ggggcacaaa
     1021 ttgatggaac ggaaccctgg cgccaaggag ctgaccaagg gtcaagagag cctctttctc
     1081 agtcagtggt cccagagacg gaaggacacc tgtggtaagg agggtggcag tgaccccatg
     1141 ggctctacgt ccatggtcct gccagccaag aagcctgcct ggccggccaa gaagaacctg
     1201 ctctgtgagt tccttggggc caccaagaac ccaagcaggc atctgaagct tcgcagcaag
     1261 gtggaggtgg acgggctgga gctgaaactt aacccgcctg tgacgggggc cgacaagaac
     1321 aacctcgagt acacagggaa tgtgttcacc ccatgctttg ccaccacctt gacctcagcg
     1381 accctgaacc agccgctctg gctcaacctg aactatccac ttctgcccgt gttcacgaat
     1441 ccctccacct tcccccagta ccagggcctg tacccacagc aggcagccag gatgccctac
     1501 cagcagaccc tgcaacccca gctggggtgt tactcccgac aggtgatgcc gtacaacaac
     1561 ccacagcaga tgggacagca gattttccac tcttcctaca accccctgct gagctacatc
     1621 cccttcgtcc agtccaacta tccgtaccct cagaggacac ctcagaagct ggccagaaat
     1681 ccccgagacc cttcccccat ggcaggagat gggctgcagt accccttccc ccaggcgtat
     1741 gggtttggct cgacatccgg tgggcccctg atgaacagcc cctattttcc ctctagtggg
     1801 aatggcatac atttttag
//
LOCUS       XM_032612956            7689 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus AT-rich interaction domain 1A (ARID1A),
            transcript variant X1, mRNA.
ACCESSION   XM_032612956
VERSION     XM_032612956.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7689
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7689
                     /gene="ARID1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 25 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743864"
     CDS             376..7233
                     /gene="ARID1A"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein 1A
                     isoform X1"
                     /protein_id="XP_032468847.1"
                     /db_xref="GeneID:116743864"
                     /translation="MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAVAAE
                     RGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGGGGGPGAEPDLKNSN
                     GNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVA
                     AAAAAVFHQQHGGQQSPGLAALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNR
                     SAYPPPPQAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGG
                     GPTAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQ
                     CWGAAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRP
                     QPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSTMGSLSYAQQ
                     IPPYGQPGPSGYGQQGQAPYYNQQSPHPQQQQQPYSQQPPSQTPHAQPSYQQQPQSQP
                     PQLQSSQPPYSQQPSQPPHQQSPTPYPTQQSTTQQHPQSQPPYSQPQAQSPYQQPPPQ
                     QPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGG
                     QEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFS
                     PHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPS
                     MNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQNSMGSYGP
                     QGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPPG
                     RMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPG
                     YPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGMAASPEMMGLGD
                     VKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKMWVDRYLAF
                     TEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSA
                     ASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQT
                     PQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTFQKRNS
                     MTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSR
                     AAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTAAPQPNLMPSNPDSGMYS
                     PSRYPAQPQPQPQPQQQRHDSYGNQFSAQGTPSSSPFPSQQTTMYQQQQQNYKRPMDG
                     TYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGN
                     AYPATAATERRPAGGPQNQFPFQFGRDRVSAPPGSSAQQNMPPQMMGGPIQASAEVAQ
                     QGTMWQGRNDMTYSYANRQSTGSAPQGAAYHGVNRTDEMLHTDQRANHEGPWPSHGTR
                     QPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHS
                     GMKMQKAGPPVPASHIAAAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTP
                     EAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLI
                     EIFGILKEYEVGDPGQRTLLDPGRFSKASSPAPMEGVEEEDLLGPKLEEEEEEDVIEN
                     DEEMAFAGKDKAASENSEEKLISKFDRLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLL
                     HWRIGGGDTTEHIQTHFESKTELLPSRPHVPCPPVTRKYVTAVEGTPGTTEQEGPPTD
                     GPPEKRITATMDDMLSTRSSTLTEEGAKSVEATKESSKFPFGISPAQSHRNIKILEDE
                     PHSKDETPLCTLLDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLIL
                     LHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLS
                     PYPESICLPVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNV
                     DLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKG
                     SIGNLLGFLEDSLAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENH
                     SEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS"
     misc_feature    <1489..1782
                     /gene="ARID1A"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; Region: PABP-1234; TIGR01628"
                     /db_xref="CDD:130689"
     misc_feature    <2167..2562
                     /gene="ARID1A"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated; Region: PRK07764"
                     /db_xref="CDD:236090"
     misc_feature    2512..>3216
                     /gene="ARID1A"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; Region: Med15; pfam09606"
                     /db_xref="CDD:312941"
     misc_feature    3427..3705
                     /gene="ARID1A"
                     /note="ARID/BRIGHT DNA binding domain of AT-rich
                     interactive domain-containing protein 1A (ARID1A) and
                     similar proteins; Region: ARID_ARID1A; cd16876"
                     /db_xref="CDD:350640"
     misc_feature    order(3493..3513,3586..3588,3592..3597,3604..3606,
                     3634..3636,3640..3648,3652..3654)
                     /gene="ARID1A"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350640"
     misc_feature    6301..7068
                     /gene="ARID1A"
                     /note="SWI/SNF-like complex subunit BAF250/Osa; Region:
                     BAF250_C; pfam12031"
                     /db_xref="CDD:463439"
ORIGIN      
        1 gcagaaagcg gagagtcaca gcggggccag gccctgggga gcggagcctc cgccgccccc
       61 ctcattccca ggcaagggct tggggggaat gagccgggag agccgggtcc cgagcctaca
      121 gagccgggag cagctgagcc gccggcgcct cggccgccgc cgcctcctcc tcctccgccg
      181 ccgccagccc ggagcctgag ccggcggggc gggggggaga ggagcgagcg agcgcagcgc
      241 agcagcggag ccccgcgagg cccgcccggg cgagtgggga gggcagcccg ggggattcgg
      301 ccccggggcg gggtgggagg gggaaagaag acgaagacag ggccgggtct ctctgcggac
      361 gagacagcgg ggatcatggc cgcgcaggtc gcccccgccg ccgccagcag cctgggcaac
      421 ccgccgccgc cgccctcgga gctgaagaaa gcggagcagc agcagcggga ggaggcgggg
      481 ggcgaggcgg cggcggtagc ggccgagcgc ggggaaatga aggcagccgc cgggcaggaa
      541 agcgagggcc ccgccgtggg gccgccgcag ccactgggaa aagagctgca ggacggggct
      601 gagagcaatg ggggtggcgg cggcggcgga gccggcggcg gtggcgggcc cggcgcggag
      661 ccggacctga agaactcgaa cgggaacgcg ggccctaggc ccgccctgaa caataacctc
      721 acggagccgc ccggcggcgg tggtggcggc agcagcgacg gggtgggggc gcctcctcac
      781 tcagccgcgg ccgccttgcc gcccccagcc tacggcttcg ggcaacccta cggccggagc
      841 ccgtctgccg tcgccgccgc ggcggccgcc gtcttccacc aacaacatgg cggacaacaa
      901 agccctggcc tggcagcgct gcagagcggc ggcggcggcg ggggcctgga gccctacgcg
      961 gggccccagc agaactcgca cgaccacggc ttccccaacc accagtacaa ctcctactac
     1021 cccaaccgca gcgcctaccc cccgcccccc caggcctacg cgctgagctc cccgagaggt
     1081 ggcactccgg ggtccggcgc ggcggcggcc gccggctcca agccgcctcc ctcctccagc
     1141 gcctccgcct cctcgtcgtc ttcgtccttc gctcagcagc gcttcggggc catgggggga
     1201 ggcggcccca cagcggccgg agggggaacc ccccagccca ccgccacccc caccctcaac
     1261 caactgctca cgtcgcccag ctcggcccgg ggctaccagg gctaccccgg gggcgactac
     1321 ggcggcgggc cccaggacgg gggcgctggc aagggcccgg cggacatggc ctcgcagtgc
     1381 tggggggctg ctgctgcggc ggcggcggcg gcggcggccg cctcgggagg agcccaacaa
     1441 aggagccacc acgcgcccat gagccccggg agcagcggcg gcgggggtca gccgctcgcc
     1501 cggaccccgc agccatccag tccaatggat cagatgggca agatgagacc tcagccatat
     1561 ggcgggacta acccatactc gcaacaacag ggacctccat caggaccgca gcaaggacat
     1621 gggtacccag ggcagccata tgggtcccag accccgcagc ggtacccgat gaccatgcag
     1681 ggccgagcgc agagtaccat gggcagcctc tcttatgcac agcagattcc accttatgga
     1741 cagccaggcc ccagcgggta tggtcagcag ggccaggctc catattacaa ccagcaaagc
     1801 cctcaccccc agcagcagca gcagccctac tcccagcagc caccatccca gacccctcac
     1861 gcccagcctt catatcagca gcagcctcag tctcagccac cgcagctcca gtcctctcag
     1921 cctccgtatt cccagcagcc atcccagccc ccccatcagc agtccccaac cccgtacccc
     1981 acccagcagt ctaccaccca gcagcacccc cagagccagc ccccctactc acagccgcag
     2041 gcacagtctc cttaccagca gccgccacct cagcagccag catcctcgac gctttcccag
     2101 caggctgcgt accctcagcc ccagtctcag cagtcacagc aaactgccta ttctcagcag
     2161 cgcttccctc caccacagga gttatctcaa gattcatttg ggtctcaggc gtcctcagcc
     2221 ccctcaatga cctccagtaa gggagggcaa gaagatatga acctgagtct tcagtcaaga
     2281 ccttcaagct tgcctgatct gtctggttca atagacgatc tccccatggg gacagaagga
     2341 gctctgagcc ctggagtgag cacatcaggg atttcaagca gccaagggga gcagagtaat
     2401 ccagctcagt ctcctttttc tccccatacc tcccctcacc tgcctggcat ccgaggcccc
     2461 tccccgtccc cagttggctc tcctgccagt gttgctcagt ctcgctcagg accactctcg
     2521 cctgctgcag tgccaggcaa ccagatgcca cctcggccac ccagtggcca gtcggacagc
     2581 atcatgcatc cttctatgaa ccaatcaagc attgcccaag atcgaggtta catgcagagg
     2641 aatccccaga tgccccagta cagttccccc cagcccgggt cggccttatc tccacgtcag
     2701 ccttctggag gacagatgca cacaggcatg ggctcctacc agcagaactc catggggagc
     2761 tatggtcccc agggaagtca gtacggccca cagggaggct accccaggca gccaaactat
     2821 aatgccttgc ccaatgctaa ctaccccagt gcaggcatgg ctggaagcat gaaccctatg
     2881 ggtgctggag gtcagatgca tgggcagcct ggcatcccac cttatggcac actccctcca
     2941 gggagaatga gtcatgcctc catgggcaac cggccttatg gccctaacat ggccaatatg
     3001 ccacctcagg ttgggtcagg gatgtgtccc ccaccagggg gcatgaaccg gaaaactcaa
     3061 gaaactgctg tcgccatgca cgttgctgcc aactctatcc agaacaggcc accaggctac
     3121 cccaatatga atcaaggggg cataatggga actggacctc cctatggaca agggattaat
     3181 agtatggctg gcatgatcaa ccctcaggga cccccatatc cgatgggtgg aaccatggct
     3241 aacaattcag cagggatggc agccagccca gagatgatgg gtcttgggga tgtcaagtta
     3301 actccagcca ccaaaatgaa caacaaggca gatgggacac ccaagacgga atctaaatcc
     3361 aagaaatcca gttcttctac tacaaccaat gagaagatca ccaagttgta tgagctgggt
     3421 ggtgagcctg agaggaagat gtgggtggac cgttatctgg ccttcacgga ggagaaggcc
     3481 atgggcatga caaatctgcc tgctgtgggt aggaaacctc tggacctgta ccgcctctat
     3541 gtgtctgtga aggaaattgg tggattgact caggtcaaca agaacaaaaa atggcgggaa
     3601 cttgcgacca acctcaatgt cggcacctca agcagtgctg ccagctcctt gaaaaagcag
     3661 tacatccaat gtctctatgc ctttgagtgc aagatcgaac ggggagaaga ccctccccca
     3721 gacatctttg cagctgctga ttccaagaag tcccagccca agatccagcc tccctctcct
     3781 gcgggatcag ggtcaatgca ggggccacag acacctcagt caaccagcag ttccatggca
     3841 gaagggggag acctgaagcc accaactcca gcatccacac cacacagcca gatccccccc
     3901 ttgccaggca tgagcaggag caattcggtc gggatccagg acgcctttcc tgacggaagt
     3961 gaccccacat tccaaaagcg gaattccatg actccaaacc ctgggtacca gcccagtatg
     4021 aatacctctg acatgatggg gcgcatgtcc tacgagccaa ataaggatcc ttatggcagc
     4081 atgaggaaag ctccggggag tgatcccttc atgtcctcag gtcagggccc taacggcggg
     4141 atgggggacc cctacagtcg agctgccggc cctgggctgg gaaatgtggc gatgggaccg
     4201 cgacagcact atccctatgg aggtccttat gacagagtga ggacggagcc cggaatagga
     4261 cccgagggaa acatgggcac tgcagcccca cagccgaatc tcatgccttc caacccagac
     4321 tcggggatgt attctcctag ccgttacccc gcacagccgc agccgcagcc gcagccgcag
     4381 cagcaacgac atgattccta tggcaatcag ttctccgctc aaggcacccc ttccagcagc
     4441 cccttcccca gccagcagac cacgatgtat cagcagcagc agcagaatta caagcggccg
     4501 atggatggca catacggccc tcctgccaag aggcacgaag gggagatgta cagtgtgcca
     4561 tacagcacgg ggcaggggca gccccagcag cagcagttgc ccccagccca gccccagcct
     4621 gccagccagc aacaagctgc tcagccttcc cctcagcaag atgtgtacaa ccagtacggc
     4681 aatgcctatc ctgccactgc tgctactgag cgccgaccgg caggcggccc ccagaaccag
     4741 tttccattcc agtttggccg agaccgtgtc tcagcacccc ctggctccag tgcccaacag
     4801 aacatgccac cgcagatgat gggcggcccc atacaggcat cggctgaggt tgctcagcaa
     4861 ggcaccatgt ggcaggggcg taatgacatg acctacagtt acgccaacag gcagagcacg
     4921 ggctctgccc cgcaaggtgc tgcctatcat ggcgtgaacc gaacagatga aatgctgcac
     4981 acggatcaga gagccaacca tgaaggccca tggccttccc atggcacacg ccagccccca
     5041 tatggtcctt ctgcccccgt gccccccatg acaaggcccc ctccatccaa ctaccagccc
     5101 ccaccgagca tgcagaatca cattcctcag gtatccagcc ctgctcccct gccccggcca
     5161 atggagaacc gcacctctcc tagcaagtct ccgttcctgc actccgggat gaagatgcag
     5221 aaggcgggtc ccccggtacc tgcctcacac atagcagctg cccctgtgca gccccctatg
     5281 attcggcggg acatcacctt cccacctggc tctgtcgaag ccacacagcc tgtgttgaag
     5341 cagaggaggc ggctcacgat gaaagacatc ggaaccccgg aggcatggcg ggtaatgatg
     5401 tccctcaagt ctgggctgct ggcagagagc acgtgggcat tagacaccat taacatcctg
     5461 ctgtatgatg acaacagcat catgactttc aacctcagtc agctcccagg gttgctagag
     5521 ctccttgtgg aatatttccg acgttgcctg attgagatct ttggcatttt aaaggagtat
     5581 gaggtgggtg acccaggaca gagaacacta ctggaccctg ggagattcag caaagcgtct
     5641 agtccagctc ctatggaggg ggtggaggag gaagaccttc taggtcccaa actagaggag
     5701 gaagaagagg aggacgtaat tgaaaatgat gaggagatgg cctttgcggg caaggacaaa
     5761 gccgcctcag agaatagtga ggagaaactg attagtaagt ttgacaggct tccagtaaag
     5821 atcgtgcaaa agaatgaccc gttcgtggtg gactgctcag ataagcttgg gcgcgtgcag
     5881 gagttcgaca gtggcttgct gcactggcgg attggtgggg gggacaccac tgagcatatc
     5941 cagacccact ttgagagcaa aacagagctg ctgccttccc ggcctcatgt accctgccca
     6001 ccagtcactc ggaagtatgt cacagcagta gagggtacac cagggacaac agagcaggag
     6061 ggccccccga ctgatggccc tccagaaaaa cggatcacag ccactatgga tgacatgttg
     6121 tccacccggt ctagcacact gaccgaggag ggagctaaga gtgtagaggc caccaaggaa
     6181 agcagcaagt ttccatttgg catcagccca gcacagagcc atcggaacat caagatccta
     6241 gaggatgaac cccacagtaa agatgagacc ccactgtgta cccttctgga ctggcaggat
     6301 tcccttgcca aacgctgcgt ctgtgtctcc aataccatcc gaagtctgtc atttgtgcca
     6361 ggcaacgact ttgagatgtc caagcacccg gggctgctgc tgatcctggg caagctgatc
     6421 cttctgcacc acaagcaccc ggaacggaag caggcgccac tgacttacga gaaggaggag
     6481 gagcaggacc aaggggtgag ctgcaacaaa gtggagtggt ggtgggactg cttggagatg
     6541 cttcgggaaa acaccttggt cacgctcgcc aacatttcgg ggcagttgga cctctcccca
     6601 taccccgaga gcatttgcct gcctgtcctg gatggactcc tacactgggc agtctgccct
     6661 tcagctgaag cccaggaccc cttctccacc ctgggcccca acgccgtcct ctccccacag
     6721 agactggtct tggaaaccct cagcaaactc agcatccagg acaacaatgt ggacctgatc
     6781 ctggccacac cccccttcag ccgcctggag aagttgtaca gcaccatggt gcgcttcctc
     6841 agtgaccgga agaacccggt gtgccgggag atggctgtgg tactgctagc caacctggcg
     6901 cagggtgaca gcctggcggc ccgtgccatt gcagtgcaga aaggcagcat cggcaacctc
     6961 ctgggcttcc tggaggatag ccttgctgcc acacagttcc agcagagcca ggccagcctg
     7021 ctccacatgc agaacccgcc ctttgagcca actagtgtgg acatgatgcg acgggctgcc
     7081 cgtgcgctgc tggccctggc caaggtggac gagaaccact cggagttcac gctgtatgag
     7141 tcacggctgt tggacatctc ggtatcaccg ttgatgaact cattggtttc acaagtcatt
     7201 tgcgatgtac tgtttttgat tggccagtca tgacagccgt gggacacctc cctccctgtg
     7261 tgcgtgtgcg tgtgtggaga acttagaaac tgactgttgc cctttattta tgcaaaacca
     7321 cctcagaatc cagtttaccc tgtgctgtcc agcttctccc ttggaaaaaa agtctctcct
     7381 atttctcttt tctcttcctt ctcgcccctt cttcctcccg atctttctat tccctgtcct
     7441 cactttactc ccctcaggac cctgccctat ttgaaaagac aaagctctgc ctacatagaa
     7501 gactttttat tttaaccaaa gttactgtcg tttacagtga gtttggggaa aaaaaaataa
     7561 aaataaaaat ggctttccca gtccttgcat caaggggatg ccacatttca taatgttttt
     7621 aatggttaaa aaaaacaaaa caaaaaaaaa caaaaaaaaa aaggaaaaaa aaaaacaaaa
     7681 aaaaaaccc
//
LOCUS       XM_032612965            7630 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus AT-rich interaction domain 1A (ARID1A),
            transcript variant X2, mRNA.
ACCESSION   XM_032612965
VERSION     XM_032612965.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7630
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7630
                     /gene="ARID1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 10 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116743864"
     CDS             376..7230
                     /gene="ARID1A"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein 1A
                     isoform X2"
                     /protein_id="XP_032468856.1"
                     /db_xref="GeneID:116743864"
                     /translation="MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAVAAE
                     RGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGGGGGPGAEPDLKNSN
                     GNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVA
                     AAAAAVFHQQHGGQQSPGLAALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNR
                     SAYPPPPQAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGG
                     GPTAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQ
                     CWGAAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRP
                     QPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSTMGSLSYAQQ
                     IPPYGQPGPSGYGQQGQAPYYNQQSPHPQQQQQPYSQQPPSQTPHAQPSYQQQPQSQP
                     PQLQSSQPPYSQQPSQPPHQQSPTPYPTQQSTTQQHPQSQPPYSQPQAQSPYQQPPPQ
                     QPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGG
                     QEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFS
                     PHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPS
                     MNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQNSMGSYGP
                     QGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPPG
                     RMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPG
                     YPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGMAASPEMMGLGD
                     VKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKMWVDRYLAF
                     TEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSA
                     ASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQT
                     PQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMRSNSVGIQDAFPDGSDPTFQKRNSM
                     TPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSRA
                     AGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTAAPQPNLMPSNPDSGMYSP
                     SRYPAQPQPQPQPQQQRHDSYGNQFSAQGTPSSSPFPSQQTTMYQQQQQNYKRPMDGT
                     YGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNA
                     YPATAATERRPAGGPQNQFPFQFGRDRVSAPPGSSAQQNMPPQMMGGPIQASAEVAQQ
                     GTMWQGRNDMTYSYANRQSTGSAPQGAAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQ
                     PPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSG
                     MKMQKAGPPVPASHIAAAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPE
                     AWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIE
                     IFGILKEYEVGDPGQRTLLDPGRFSKASSPAPMEGVEEEDLLGPKLEEEEEEDVIEND
                     EEMAFAGKDKAASENSEEKLISKFDRLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLH
                     WRIGGGDTTEHIQTHFESKTELLPSRPHVPCPPVTRKYVTAVEGTPGTTEQEGPPTDG
                     PPEKRITATMDDMLSTRSSTLTEEGAKSVEATKESSKFPFGISPAQSHRNIKILEDEP
                     HSKDETPLCTLLDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILL
                     HHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSP
                     YPESICLPVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVD
                     LILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGS
                     IGNLLGFLEDSLAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHS
                     EFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS"
     misc_feature    <1489..1782
                     /gene="ARID1A"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; Region: PABP-1234; TIGR01628"
                     /db_xref="CDD:130689"
     misc_feature    <2167..2562
                     /gene="ARID1A"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated; Region: PRK07764"
                     /db_xref="CDD:236090"
     misc_feature    2512..>3216
                     /gene="ARID1A"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; Region: Med15; pfam09606"
                     /db_xref="CDD:312941"
     misc_feature    3427..3705
                     /gene="ARID1A"
                     /note="ARID/BRIGHT DNA binding domain of AT-rich
                     interactive domain-containing protein 1A (ARID1A) and
                     similar proteins; Region: ARID_ARID1A; cd16876"
                     /db_xref="CDD:350640"
     misc_feature    order(3493..3513,3586..3588,3592..3597,3604..3606,
                     3634..3636,3640..3648,3652..3654)
                     /gene="ARID1A"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350640"
     misc_feature    6298..7065
                     /gene="ARID1A"
                     /note="SWI/SNF-like complex subunit BAF250/Osa; Region:
                     BAF250_C; pfam12031"
                     /db_xref="CDD:463439"
ORIGIN      
        1 gcagaaagcg gagagtcaca gcggggccag gccctgggga gcggagcctc cgccgccccc
       61 ctcattccca ggcaagggct tggggggaat gagccgggag agccgggtcc cgagcctaca
      121 gagccgggag cagctgagcc gccggcgcct cggccgccgc cgcctcctcc tcctccgccg
      181 ccgccagccc ggagcctgag ccggcggggc gggggggaga ggagcgagcg agcgcagcgc
      241 agcagcggag ccccgcgagg cccgcccggg cgagtgggga gggcagcccg ggggattcgg
      301 ccccggggcg gggtgggagg gggaaagaag acgaagacag ggccgggtct ctctgcggac
      361 gagacagcgg ggatcatggc cgcgcaggtc gcccccgccg ccgccagcag cctgggcaac
      421 ccgccgccgc cgccctcgga gctgaagaaa gcggagcagc agcagcggga ggaggcgggg
      481 ggcgaggcgg cggcggtagc ggccgagcgc ggggaaatga aggcagccgc cgggcaggaa
      541 agcgagggcc ccgccgtggg gccgccgcag ccactgggaa aagagctgca ggacggggct
      601 gagagcaatg ggggtggcgg cggcggcgga gccggcggcg gtggcgggcc cggcgcggag
      661 ccggacctga agaactcgaa cgggaacgcg ggccctaggc ccgccctgaa caataacctc
      721 acggagccgc ccggcggcgg tggtggcggc agcagcgacg gggtgggggc gcctcctcac
      781 tcagccgcgg ccgccttgcc gcccccagcc tacggcttcg ggcaacccta cggccggagc
      841 ccgtctgccg tcgccgccgc ggcggccgcc gtcttccacc aacaacatgg cggacaacaa
      901 agccctggcc tggcagcgct gcagagcggc ggcggcggcg ggggcctgga gccctacgcg
      961 gggccccagc agaactcgca cgaccacggc ttccccaacc accagtacaa ctcctactac
     1021 cccaaccgca gcgcctaccc cccgcccccc caggcctacg cgctgagctc cccgagaggt
     1081 ggcactccgg ggtccggcgc ggcggcggcc gccggctcca agccgcctcc ctcctccagc
     1141 gcctccgcct cctcgtcgtc ttcgtccttc gctcagcagc gcttcggggc catgggggga
     1201 ggcggcccca cagcggccgg agggggaacc ccccagccca ccgccacccc caccctcaac
     1261 caactgctca cgtcgcccag ctcggcccgg ggctaccagg gctaccccgg gggcgactac
     1321 ggcggcgggc cccaggacgg gggcgctggc aagggcccgg cggacatggc ctcgcagtgc
     1381 tggggggctg ctgctgcggc ggcggcggcg gcggcggccg cctcgggagg agcccaacaa
     1441 aggagccacc acgcgcccat gagccccggg agcagcggcg gcgggggtca gccgctcgcc
     1501 cggaccccgc agccatccag tccaatggat cagatgggca agatgagacc tcagccatat
     1561 ggcgggacta acccatactc gcaacaacag ggacctccat caggaccgca gcaaggacat
     1621 gggtacccag ggcagccata tgggtcccag accccgcagc ggtacccgat gaccatgcag
     1681 ggccgagcgc agagtaccat gggcagcctc tcttatgcac agcagattcc accttatgga
     1741 cagccaggcc ccagcgggta tggtcagcag ggccaggctc catattacaa ccagcaaagc
     1801 cctcaccccc agcagcagca gcagccctac tcccagcagc caccatccca gacccctcac
     1861 gcccagcctt catatcagca gcagcctcag tctcagccac cgcagctcca gtcctctcag
     1921 cctccgtatt cccagcagcc atcccagccc ccccatcagc agtccccaac cccgtacccc
     1981 acccagcagt ctaccaccca gcagcacccc cagagccagc ccccctactc acagccgcag
     2041 gcacagtctc cttaccagca gccgccacct cagcagccag catcctcgac gctttcccag
     2101 caggctgcgt accctcagcc ccagtctcag cagtcacagc aaactgccta ttctcagcag
     2161 cgcttccctc caccacagga gttatctcaa gattcatttg ggtctcaggc gtcctcagcc
     2221 ccctcaatga cctccagtaa gggagggcaa gaagatatga acctgagtct tcagtcaaga
     2281 ccttcaagct tgcctgatct gtctggttca atagacgatc tccccatggg gacagaagga
     2341 gctctgagcc ctggagtgag cacatcaggg atttcaagca gccaagggga gcagagtaat
     2401 ccagctcagt ctcctttttc tccccatacc tcccctcacc tgcctggcat ccgaggcccc
     2461 tccccgtccc cagttggctc tcctgccagt gttgctcagt ctcgctcagg accactctcg
     2521 cctgctgcag tgccaggcaa ccagatgcca cctcggccac ccagtggcca gtcggacagc
     2581 atcatgcatc cttctatgaa ccaatcaagc attgcccaag atcgaggtta catgcagagg
     2641 aatccccaga tgccccagta cagttccccc cagcccgggt cggccttatc tccacgtcag
     2701 ccttctggag gacagatgca cacaggcatg ggctcctacc agcagaactc catggggagc
     2761 tatggtcccc agggaagtca gtacggccca cagggaggct accccaggca gccaaactat
     2821 aatgccttgc ccaatgctaa ctaccccagt gcaggcatgg ctggaagcat gaaccctatg
     2881 ggtgctggag gtcagatgca tgggcagcct ggcatcccac cttatggcac actccctcca
     2941 gggagaatga gtcatgcctc catgggcaac cggccttatg gccctaacat ggccaatatg
     3001 ccacctcagg ttgggtcagg gatgtgtccc ccaccagggg gcatgaaccg gaaaactcaa
     3061 gaaactgctg tcgccatgca cgttgctgcc aactctatcc agaacaggcc accaggctac
     3121 cccaatatga atcaaggggg cataatggga actggacctc cctatggaca agggattaat
     3181 agtatggctg gcatgatcaa ccctcaggga cccccatatc cgatgggtgg aaccatggct
     3241 aacaattcag cagggatggc agccagccca gagatgatgg gtcttgggga tgtcaagtta
     3301 actccagcca ccaaaatgaa caacaaggca gatgggacac ccaagacgga atctaaatcc
     3361 aagaaatcca gttcttctac tacaaccaat gagaagatca ccaagttgta tgagctgggt
     3421 ggtgagcctg agaggaagat gtgggtggac cgttatctgg ccttcacgga ggagaaggcc
     3481 atgggcatga caaatctgcc tgctgtgggt aggaaacctc tggacctgta ccgcctctat
     3541 gtgtctgtga aggaaattgg tggattgact caggtcaaca agaacaaaaa atggcgggaa
     3601 cttgcgacca acctcaatgt cggcacctca agcagtgctg ccagctcctt gaaaaagcag
     3661 tacatccaat gtctctatgc ctttgagtgc aagatcgaac ggggagaaga ccctccccca
     3721 gacatctttg cagctgctga ttccaagaag tcccagccca agatccagcc tccctctcct
     3781 gcgggatcag ggtcaatgca ggggccacag acacctcagt caaccagcag ttccatggca
     3841 gaagggggag acctgaagcc accaactcca gcatccacac cacacagcca gatccccccc
     3901 ttgccaggca tgaggagcaa ttcggtcggg atccaggacg cctttcctga cggaagtgac
     3961 cccacattcc aaaagcggaa ttccatgact ccaaaccctg ggtaccagcc cagtatgaat
     4021 acctctgaca tgatggggcg catgtcctac gagccaaata aggatcctta tggcagcatg
     4081 aggaaagctc cggggagtga tcccttcatg tcctcaggtc agggccctaa cggcgggatg
     4141 ggggacccct acagtcgagc tgccggccct gggctgggaa atgtggcgat gggaccgcga
     4201 cagcactatc cctatggagg tccttatgac agagtgagga cggagcccgg aataggaccc
     4261 gagggaaaca tgggcactgc agccccacag ccgaatctca tgccttccaa cccagactcg
     4321 gggatgtatt ctcctagccg ttaccccgca cagccgcagc cgcagccgca gccgcagcag
     4381 caacgacatg attcctatgg caatcagttc tccgctcaag gcaccccttc cagcagcccc
     4441 ttccccagcc agcagaccac gatgtatcag cagcagcagc agaattacaa gcggccgatg
     4501 gatggcacat acggccctcc tgccaagagg cacgaagggg agatgtacag tgtgccatac
     4561 agcacggggc aggggcagcc ccagcagcag cagttgcccc cagcccagcc ccagcctgcc
     4621 agccagcaac aagctgctca gccttcccct cagcaagatg tgtacaacca gtacggcaat
     4681 gcctatcctg ccactgctgc tactgagcgc cgaccggcag gcggccccca gaaccagttt
     4741 ccattccagt ttggccgaga ccgtgtctca gcaccccctg gctccagtgc ccaacagaac
     4801 atgccaccgc agatgatggg cggccccata caggcatcgg ctgaggttgc tcagcaaggc
     4861 accatgtggc aggggcgtaa tgacatgacc tacagttacg ccaacaggca gagcacgggc
     4921 tctgccccgc aaggtgctgc ctatcatggc gtgaaccgaa cagatgaaat gctgcacacg
     4981 gatcagagag ccaaccatga aggcccatgg ccttcccatg gcacacgcca gcccccatat
     5041 ggtccttctg cccccgtgcc ccccatgaca aggccccctc catccaacta ccagccccca
     5101 ccgagcatgc agaatcacat tcctcaggta tccagccctg ctcccctgcc ccggccaatg
     5161 gagaaccgca cctctcctag caagtctccg ttcctgcact ccgggatgaa gatgcagaag
     5221 gcgggtcccc cggtacctgc ctcacacata gcagctgccc ctgtgcagcc ccctatgatt
     5281 cggcgggaca tcaccttccc acctggctct gtcgaagcca cacagcctgt gttgaagcag
     5341 aggaggcggc tcacgatgaa agacatcgga accccggagg catggcgggt aatgatgtcc
     5401 ctcaagtctg ggctgctggc agagagcacg tgggcattag acaccattaa catcctgctg
     5461 tatgatgaca acagcatcat gactttcaac ctcagtcagc tcccagggtt gctagagctc
     5521 cttgtggaat atttccgacg ttgcctgatt gagatctttg gcattttaaa ggagtatgag
     5581 gtgggtgacc caggacagag aacactactg gaccctggga gattcagcaa agcgtctagt
     5641 ccagctccta tggagggggt ggaggaggaa gaccttctag gtcccaaact agaggaggaa
     5701 gaagaggagg acgtaattga aaatgatgag gagatggcct ttgcgggcaa ggacaaagcc
     5761 gcctcagaga atagtgagga gaaactgatt agtaagtttg acaggcttcc agtaaagatc
     5821 gtgcaaaaga atgacccgtt cgtggtggac tgctcagata agcttgggcg cgtgcaggag
     5881 ttcgacagtg gcttgctgca ctggcggatt ggtggggggg acaccactga gcatatccag
     5941 acccactttg agagcaaaac agagctgctg ccttcccggc ctcatgtacc ctgcccacca
     6001 gtcactcgga agtatgtcac agcagtagag ggtacaccag ggacaacaga gcaggagggc
     6061 cccccgactg atggccctcc agaaaaacgg atcacagcca ctatggatga catgttgtcc
     6121 acccggtcta gcacactgac cgaggaggga gctaagagtg tagaggccac caaggaaagc
     6181 agcaagtttc catttggcat cagcccagca cagagccatc ggaacatcaa gatcctagag
     6241 gatgaacccc acagtaaaga tgagacccca ctgtgtaccc ttctggactg gcaggattcc
     6301 cttgccaaac gctgcgtctg tgtctccaat accatccgaa gtctgtcatt tgtgccaggc
     6361 aacgactttg agatgtccaa gcacccgggg ctgctgctga tcctgggcaa gctgatcctt
     6421 ctgcaccaca agcacccgga acggaagcag gcgccactga cttacgagaa ggaggaggag
     6481 caggaccaag gggtgagctg caacaaagtg gagtggtggt gggactgctt ggagatgctt
     6541 cgggaaaaca ccttggtcac gctcgccaac atttcggggc agttggacct ctccccatac
     6601 cccgagagca tttgcctgcc tgtcctggat ggactcctac actgggcagt ctgcccttca
     6661 gctgaagccc aggacccctt ctccaccctg ggccccaacg ccgtcctctc cccacagaga
     6721 ctggtcttgg aaaccctcag caaactcagc atccaggaca acaatgtgga cctgatcctg
     6781 gccacacccc ccttcagccg cctggagaag ttgtacagca ccatggtgcg cttcctcagt
     6841 gaccggaaga acccggtgtg ccgggagatg gctgtggtac tgctagccaa cctggcgcag
     6901 ggtgacagcc tggcggcccg tgccattgca gtgcagaaag gcagcatcgg caacctcctg
     6961 ggcttcctgg aggatagcct tgctgccaca cagttccagc agagccaggc cagcctgctc
     7021 cacatgcaga acccgccctt tgagccaact agtgtggaca tgatgcgacg ggctgcccgt
     7081 gcgctgctgg ccctggccaa ggtggacgag aaccactcgg agttcacgct gtatgagtca
     7141 cggctgttgg acatctcggt atcaccgttg atgaactcat tggtttcaca agtcatttgc
     7201 gatgtactgt ttttgattgg ccagtcatga cagccgtggg acacctccct ccctgtgtgc
     7261 gtgtgcgtgt gtggagaact tagaaactga ctgttgccct ttatttatgc aaaaccacct
     7321 cagaatccag tttaccctgt gctgtccagc ttctcccttg gaaaaaaagt ctctcctatt
     7381 tctcttttct cttccttctc gccccttctt cctcccgatc tttctattcc ctgtcctcac
     7441 tttactcccc tcaggaccct gccctatttg aaaagacaaa gctctgccta catagaagac
     7501 tttttatttt aaccaaagtt actgtcgttt acagtgagtt tggggaaaaa aaaataaaaa
     7561 taaaaatggc tttcccagtc cttgcatcaa ggggatgcca catttcataa tgtttttaat
     7621 ggttaaaaaa
//
LOCUS       XM_032612976            2540 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon regulatory factor 6 (IRF6),
            transcript variant X1, mRNA.
ACCESSION   XM_032612976
VERSION     XM_032612976.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2540
                     /gene="IRF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 30 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743873"
     CDS             281..1684
                     /gene="IRF6"
                     /codon_start=1
                     /product="interferon regulatory factor 6 isoform X1"
                     /protein_id="XP_032468867.1"
                     /db_xref="GeneID:116743873"
                     /translation="MALHPRRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHAT
                     RHSPQQEEENTIFKAWAVETGKYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKE
                     VPMNPVKIYQVCDIPQPQGSIINPGSTGSAPWDEKDNDVDEEDEEDELDQSQHHVPIQ
                     DTFPFLNINGSPIAPASVGNCSVGNCSPEAVWPKTEPLEMEVPQTPIQPFYSSPELWI
                     SSLPMTDLDIKFQYRGKEYAQTMTVSNPQGCRLFYGDLGPMPDQEELFGPVSLEQVKF
                     PGPEHITNEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCKVYWSGPCAPSLVAP
                     NLIERQKKVKLFCLETFLSDLIAHQKGQIEKQPPFEIYLCFGEEWPDGKPQERKLILV
                     QVIPVVARMIYEMFSGDFTRSFDSGSVRLQISTPDIKDNIVAQLKQLYRILQTQESWQ
                     PMQPTPSMQLSPALPAQ"
     misc_feature    305..622
                     /gene="IRF6"
                     /note="Interferon regulatory factor transcription factor;
                     Region: IRF; pfam00605"
                     /db_xref="CDD:459863"
     misc_feature    order(404..406,524..526,530..535,542..544)
                     /gene="IRF6"
                     /note="DNA sequence recognition sites [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238051"
     misc_feature    order(539..544,548..550,557..559)
                     /gene="IRF6"
                     /note="metal-binding site"
                     /db_xref="CDD:238051"
     misc_feature    947..1501
                     /gene="IRF6"
                     /note="Interferon-regulatory factor 3; Region: IRF-3;
                     pfam10401"
                     /db_xref="CDD:463076"
ORIGIN      
        1 cgtgagcttg gctcacctgg gcggggaagg tgagggccgg tgtgggactg ggagcggagc
       61 ctgcagtccc tacctacgca gagccaggtg ttgcttgccc aaccggccga ggagagcagt
      121 ggcgacgggt gatcctaact ggggacttgg ttcggaggga cgttcgcttc tggcagccgg
      181 attgaagaaa ggtgggggag ccaacgtctg gagcctcgct tgagggaggg aggacacgcc
      241 cgccggtgaa gaagcgtccc ctccagagtt tgtggggatc atggctctcc acccccgcag
      301 agttcggctg aagccctggt tggtggccca agtggatagt ggcctgtacc ctgggctcat
      361 ctggctacat agggactcca aacgcttcca gattccctgg aaacatgcca cccggcatag
      421 cccccaacaa gaggaggaaa ataccatttt caaggcctgg gctgtggaga cagggaagta
      481 ccaggaaggg gtggatgacc ccgacccagc taaatggaag gcccagctcc gctgtgcgct
      541 caacaagagc agggaattca acctgatgta cgacggcacc aaggaggtgc ccatgaaccc
      601 agtgaagata tatcaagtgt gtgacatccc ccagccccag ggctctatca ttaacccagg
      661 atccactgga tctgctcctt gggatgagaa agataatgat gtggatgaag aagatgagga
      721 agatgagctg gaccagtcac agcaccacgt tcccatccag gacaccttcc ccttcctgaa
      781 catcaatggt tctcccatag caccagccag tgtgggcaac tgcagtgtgg gcaactgcag
      841 ccccgaagca gtgtggccca aaacggaacc tctggagatg gaagtacccc agacacctat
      901 acagcctttc tatagctctc cagagctgtg gatcagctct ctcccaatga ctgacctgga
      961 catcaaattt cagtaccgtg ggaaggagta tgcacagacc atgacggtga gcaaccccca
     1021 gggctgcagg ctcttctacg gagacttggg tcccatgcct gaccaggagg agctctttgg
     1081 tcccgtcagc ctggagcagg tcaagttccc aggtccggag cacatcacca atgagaagca
     1141 gaagctgttc accagcaaac tgctagacgt catggacaga ggactgatcc tggaggtcag
     1201 cggtcatgcc atctatgcta tcaggctgtg ccagtgcaag gtgtactggt ctgggccatg
     1261 tgccccgtcg cttgttgccc ccaacctgat cgagagacaa aagaaggtca aactcttttg
     1321 tctggaaacg ttccttagtg atctcattgc ccaccagaaa ggacagatag agaaacagcc
     1381 accatttgag atctacttat gctttgggga agagtggcca gatgggaaac ctcaggaaag
     1441 gaaactcatc ttggttcagg tcattccagt ggtggcccgg atgatctatg agatgttttc
     1501 tggtgatttc acacgatcct ttgacagtgg cagtgtccgc ctgcagatct caactccaga
     1561 catcaaggat aacattgttg ctcagctgaa gcagctgtac cgcatcctgc aaacccagga
     1621 aagctggcag cccatgcagc ccacccccag catgcaactg tcccctgccc tgccagccca
     1681 gtaatcatga atgccatctt ccttctcttt tttacaatat tgtacatatg gatatttttt
     1741 attagattta accagctttt aaacctttct tctttctaac aatattagta ctctctgact
     1801 ttccaaatat gcctagcttt taaagttgat ttaatttatg gaaaaatcac ccttcatact
     1861 ttccctttct tttttaaacc tccccacggt agtgtaatgt agtagaagga gatttggcct
     1921 gggagtttgg acaccagggt tctagccgca gctttgcttc cagtggtgtg accttgaacc
     1981 aagtcattta gcctctgggc ttcagattca ttactgtaaa atgaaggagt tggaatgatg
     2041 cctgaaataa tgccagcttt aaaactctga ctcagtgact tccttctact tgtacaaggc
     2101 aaaactgcct ggaacagaac atttctgcct tgttcttgca ccacttttct tttttttttt
     2161 tttttttttt ttgctttcat taaagttccc tcaagcactg atttgtccag gattgatctc
     2221 cgtttgacct gttctgctag tatagtaagc tggcttcccc gatgggggaa gagggaggga
     2281 ggggcaccgg ctggttgctt gggaaccaag ctagatatct aaagagaagt aggtgccaaa
     2341 gtctgaaagt cacccagcct gtggagtaaa aactcacaaa ctgagcttct aaggggaggg
     2401 cattgatgta gaggcttagg gattctgtag aagaatcggc tgtcaggttt tcaacttatc
     2461 accactgaaa tacgggcata cctcggagat attgcagggc tagtcccaaa ccactgcaat
     2521 aaagtggata ttgcaataaa
//
LOCUS       XM_032612986            2454 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon regulatory factor 6 (IRF6),
            transcript variant X2, mRNA.
ACCESSION   XM_032612986
VERSION     XM_032612986.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2454
                     /gene="IRF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 30 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743873"
     CDS             195..1598
                     /gene="IRF6"
                     /codon_start=1
                     /product="interferon regulatory factor 6 isoform X1"
                     /protein_id="XP_032468877.1"
                     /db_xref="GeneID:116743873"
                     /translation="MALHPRRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHAT
                     RHSPQQEEENTIFKAWAVETGKYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKE
                     VPMNPVKIYQVCDIPQPQGSIINPGSTGSAPWDEKDNDVDEEDEEDELDQSQHHVPIQ
                     DTFPFLNINGSPIAPASVGNCSVGNCSPEAVWPKTEPLEMEVPQTPIQPFYSSPELWI
                     SSLPMTDLDIKFQYRGKEYAQTMTVSNPQGCRLFYGDLGPMPDQEELFGPVSLEQVKF
                     PGPEHITNEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCKVYWSGPCAPSLVAP
                     NLIERQKKVKLFCLETFLSDLIAHQKGQIEKQPPFEIYLCFGEEWPDGKPQERKLILV
                     QVIPVVARMIYEMFSGDFTRSFDSGSVRLQISTPDIKDNIVAQLKQLYRILQTQESWQ
                     PMQPTPSMQLSPALPAQ"
     misc_feature    219..536
                     /gene="IRF6"
                     /note="Interferon regulatory factor transcription factor;
                     Region: IRF; pfam00605"
                     /db_xref="CDD:459863"
     misc_feature    order(318..320,438..440,444..449,456..458)
                     /gene="IRF6"
                     /note="DNA sequence recognition sites [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238051"
     misc_feature    order(453..458,462..464,471..473)
                     /gene="IRF6"
                     /note="metal-binding site"
                     /db_xref="CDD:238051"
     misc_feature    861..1415
                     /gene="IRF6"
                     /note="Interferon-regulatory factor 3; Region: IRF-3;
                     pfam10401"
                     /db_xref="CDD:463076"
ORIGIN      
        1 cgtgagcttg gctcacctgg gcggggaagg tgagggccgg tgtgggactg ggagcggagc
       61 ctgcagtccc tacctacgca gagccaggtg ttgcttgccc aaccggccga ggagagcagt
      121 ggcgacgggt gatcctaact ggggacttgg ttcggaggga cgttcgcttc tggcagccgg
      181 attgaagaaa gatcatggct ctccaccccc gcagagttcg gctgaagccc tggttggtgg
      241 cccaagtgga tagtggcctg taccctgggc tcatctggct acatagggac tccaaacgct
      301 tccagattcc ctggaaacat gccacccggc atagccccca acaagaggag gaaaatacca
      361 ttttcaaggc ctgggctgtg gagacaggga agtaccagga aggggtggat gaccccgacc
      421 cagctaaatg gaaggcccag ctccgctgtg cgctcaacaa gagcagggaa ttcaacctga
      481 tgtacgacgg caccaaggag gtgcccatga acccagtgaa gatatatcaa gtgtgtgaca
      541 tcccccagcc ccagggctct atcattaacc caggatccac tggatctgct ccttgggatg
      601 agaaagataa tgatgtggat gaagaagatg aggaagatga gctggaccag tcacagcacc
      661 acgttcccat ccaggacacc ttccccttcc tgaacatcaa tggttctccc atagcaccag
      721 ccagtgtggg caactgcagt gtgggcaact gcagccccga agcagtgtgg cccaaaacgg
      781 aacctctgga gatggaagta ccccagacac ctatacagcc tttctatagc tctccagagc
      841 tgtggatcag ctctctccca atgactgacc tggacatcaa atttcagtac cgtgggaagg
      901 agtatgcaca gaccatgacg gtgagcaacc cccagggctg caggctcttc tacggagact
      961 tgggtcccat gcctgaccag gaggagctct ttggtcccgt cagcctggag caggtcaagt
     1021 tcccaggtcc ggagcacatc accaatgaga agcagaagct gttcaccagc aaactgctag
     1081 acgtcatgga cagaggactg atcctggagg tcagcggtca tgccatctat gctatcaggc
     1141 tgtgccagtg caaggtgtac tggtctgggc catgtgcccc gtcgcttgtt gcccccaacc
     1201 tgatcgagag acaaaagaag gtcaaactct tttgtctgga aacgttcctt agtgatctca
     1261 ttgcccacca gaaaggacag atagagaaac agccaccatt tgagatctac ttatgctttg
     1321 gggaagagtg gccagatggg aaacctcagg aaaggaaact catcttggtt caggtcattc
     1381 cagtggtggc ccggatgatc tatgagatgt tttctggtga tttcacacga tcctttgaca
     1441 gtggcagtgt ccgcctgcag atctcaactc cagacatcaa ggataacatt gttgctcagc
     1501 tgaagcagct gtaccgcatc ctgcaaaccc aggaaagctg gcagcccatg cagcccaccc
     1561 ccagcatgca actgtcccct gccctgccag cccagtaatc atgaatgcca tcttccttct
     1621 cttttttaca atattgtaca tatggatatt ttttattaga tttaaccagc ttttaaacct
     1681 ttcttctttc taacaatatt agtactctct gactttccaa atatgcctag cttttaaagt
     1741 tgatttaatt tatggaaaaa tcacccttca tactttccct ttctttttta aacctcccca
     1801 cggtagtgta atgtagtaga aggagatttg gcctgggagt ttggacacca gggttctagc
     1861 cgcagctttg cttccagtgg tgtgaccttg aaccaagtca tttagcctct gggcttcaga
     1921 ttcattactg taaaatgaag gagttggaat gatgcctgaa ataatgccag ctttaaaact
     1981 ctgactcagt gacttccttc tacttgtaca aggcaaaact gcctggaaca gaacatttct
     2041 gccttgttct tgcaccactt ttcttttttt tttttttttt ttttttgctt tcattaaagt
     2101 tccctcaagc actgatttgt ccaggattga tctccgtttg acctgttctg ctagtatagt
     2161 aagctggctt ccccgatggg ggaagaggga gggaggggca ccggctggtt gcttgggaac
     2221 caagctagat atctaaagag aagtaggtgc caaagtctga aagtcaccca gcctgtggag
     2281 taaaaactca caaactgagc ttctaagggg agggcattga tgtagaggct tagggattct
     2341 gtagaagaat cggctgtcag gttttcaact tatcaccact gaaatacggg catacctcgg
     2401 agatattgca gggctagtcc caaaccactg caataaagtg gatattgcaa taaa
//
LOCUS       XM_032612994            2363 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon regulatory factor 6 (IRF6),
            transcript variant X3, mRNA.
ACCESSION   XM_032612994
VERSION     XM_032612994.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2363
                     /gene="IRF6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743873"
     CDS             389..1507
                     /gene="IRF6"
                     /codon_start=1
                     /product="interferon regulatory factor 6 isoform X2"
                     /protein_id="XP_032468885.1"
                     /db_xref="GeneID:116743873"
                     /translation="MYDGTKEVPMNPVKIYQVCDIPQPQGSIINPGSTGSAPWDEKDN
                     DVDEEDEEDELDQSQHHVPIQDTFPFLNINGSPIAPASVGNCSVGNCSPEAVWPKTEP
                     LEMEVPQTPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYAQTMTVSNPQGCRLFYGD
                     LGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLLDVMDRGLILEVSGHAIYA
                     IRLCQCKVYWSGPCAPSLVAPNLIERQKKVKLFCLETFLSDLIAHQKGQIEKQPPFEI
                     YLCFGEEWPDGKPQERKLILVQVIPVVARMIYEMFSGDFTRSFDSGSVRLQISTPDIK
                     DNIVAQLKQLYRILQTQESWQPMQPTPSMQLSPALPAQ"
     misc_feature    770..1324
                     /gene="IRF6"
                     /note="Interferon-regulatory factor 3; Region: IRF-3;
                     pfam10401"
                     /db_xref="CDD:463076"
ORIGIN      
        1 cgtgagcttg gctcacctgg gcggggaagg tgagggccgg tgtgggactg ggagcggagc
       61 ctgcagtccc tacctacgca gagccaggtg ttgcttgccc aaccggccga ggagagcagt
      121 ggcgacgggt gatcctaact ggggacttgg ttcggaggga cgttcgcttc tggcagccgg
      181 attgaagaaa ggtgggggag ccaacgtctg gagcctcgct tgagggaggg aggacacgcc
      241 cgccggtgaa gaagcgtccc ctccagagtt tgtgggggcc tgggctgtgg agacagggaa
      301 gtaccaggaa ggggtggatg accccgaccc agctaaatgg aaggcccagc tccgctgtgc
      361 gctcaacaag agcagggaat tcaacctgat gtacgacggc accaaggagg tgcccatgaa
      421 cccagtgaag atatatcaag tgtgtgacat cccccagccc cagggctcta tcattaaccc
      481 aggatccact ggatctgctc cttgggatga gaaagataat gatgtggatg aagaagatga
      541 ggaagatgag ctggaccagt cacagcacca cgttcccatc caggacacct tccccttcct
      601 gaacatcaat ggttctccca tagcaccagc cagtgtgggc aactgcagtg tgggcaactg
      661 cagccccgaa gcagtgtggc ccaaaacgga acctctggag atggaagtac cccagacacc
      721 tatacagcct ttctatagct ctccagagct gtggatcagc tctctcccaa tgactgacct
      781 ggacatcaaa tttcagtacc gtgggaagga gtatgcacag accatgacgg tgagcaaccc
      841 ccagggctgc aggctcttct acggagactt gggtcccatg cctgaccagg aggagctctt
      901 tggtcccgtc agcctggagc aggtcaagtt cccaggtccg gagcacatca ccaatgagaa
      961 gcagaagctg ttcaccagca aactgctaga cgtcatggac agaggactga tcctggaggt
     1021 cagcggtcat gccatctatg ctatcaggct gtgccagtgc aaggtgtact ggtctgggcc
     1081 atgtgccccg tcgcttgttg cccccaacct gatcgagaga caaaagaagg tcaaactctt
     1141 ttgtctggaa acgttcctta gtgatctcat tgcccaccag aaaggacaga tagagaaaca
     1201 gccaccattt gagatctact tatgctttgg ggaagagtgg ccagatggga aacctcagga
     1261 aaggaaactc atcttggttc aggtcattcc agtggtggcc cggatgatct atgagatgtt
     1321 ttctggtgat ttcacacgat cctttgacag tggcagtgtc cgcctgcaga tctcaactcc
     1381 agacatcaag gataacattg ttgctcagct gaagcagctg taccgcatcc tgcaaaccca
     1441 ggaaagctgg cagcccatgc agcccacccc cagcatgcaa ctgtcccctg ccctgccagc
     1501 ccagtaatca tgaatgccat cttccttctc ttttttacaa tattgtacat atggatattt
     1561 tttattagat ttaaccagct tttaaacctt tcttctttct aacaatatta gtactctctg
     1621 actttccaaa tatgcctagc ttttaaagtt gatttaattt atggaaaaat cacccttcat
     1681 actttccctt tcttttttaa acctccccac ggtagtgtaa tgtagtagaa ggagatttgg
     1741 cctgggagtt tggacaccag ggttctagcc gcagctttgc ttccagtggt gtgaccttga
     1801 accaagtcat ttagcctctg ggcttcagat tcattactgt aaaatgaagg agttggaatg
     1861 atgcctgaaa taatgccagc tttaaaactc tgactcagtg acttccttct acttgtacaa
     1921 ggcaaaactg cctggaacag aacatttctg ccttgttctt gcaccacttt tctttttttt
     1981 tttttttttt tttttgcttt cattaaagtt ccctcaagca ctgatttgtc caggattgat
     2041 ctccgtttga cctgttctgc tagtatagta agctggcttc cccgatgggg gaagagggag
     2101 ggaggggcac cggctggttg cttgggaacc aagctagata tctaaagaga agtaggtgcc
     2161 aaagtctgaa agtcacccag cctgtggagt aaaaactcac aaactgagct tctaagggga
     2221 gggcattgat gtagaggctt agggattctg tagaagaatc ggctgtcagg ttttcaactt
     2281 atcaccactg aaatacgggc atacctcgga gatattgcag ggctagtccc aaaccactgc
     2341 aataaagtgg atattgcaat aaa
//
LOCUS       XM_032613001            5420 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus crumbs cell polarity complex component 1
            (CRB1), transcript variant X1, mRNA.
ACCESSION   XM_032613001
VERSION     XM_032613001.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5420
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5420
                     /gene="CRB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 97% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743883"
     CDS             339..4574
                     /gene="CRB1"
                     /codon_start=1
                     /product="protein crumbs homolog 1 isoform X1"
                     /protein_id="XP_032468892.1"
                     /db_xref="GeneID:116743883"
                     /translation="MGDQVGEPMSESPVDGRVTEKLSQTLVNDSFCNKNDTKCLSDSC
                     QNNSTCKDFSKDGSCHCSGTAINLDKDCDHEEDPCFSSPCPGNTTCVSVPGERRFLCR
                     CPPGYSGTTCDTAIAPCGTSSCQHGGFCHQDPVHPVCICPAGYAGRFCELEHDECASS
                     PCHNGAVCQDGINGYSCFCVPGYQGRHCDLEVDECVSDPCKNEATCLNEIGRYTCICP
                     HDYSGVNCELEVDECRSQPCLSGATCQDAVEAHFCDCAPGFLGAGCELSTDECASGPC
                     LHGGLCVDGANRYSCNCMGSGFTGTHCETLMPPCWSKPCHNNATCEDSADNYTCHCWP
                     GYTGAQCETDIDECSSSPCQSDGECVELSSGEGHGRLAQLLSLSGHPEASGYICICPP
                     GLTGVHCEEDVDECSSSPCQNGGTCENLPGTYTCHCPFDNHSGAFYGGRNCSDLLLSC
                     TDHPCLNNGTCVPHLHNGQHGFSCLCPSGYTGSRCETVTTLSFEGDGFLWVPSGSVTA
                     KDSGCTIALRFQTVQPVALLLFRGDRDVFVVLELLSGYIHLSVQVRDQPKVVLFISHS
                     TSDGEWHTVEVTFAEAVTLALLDESCLGTCITRAPSPFGSDGSTCALQNSFLGGLPEG
                     TAHSGVALLNVYNRPSIPSLVGCLQDVQLDSNPITLENISSGWSLNVKAGCTRKDWCE
                     SQPCHNRGRCLNLWLSYQCDCYRPYRGRSCHRAYVAGRFGQDDSTGYAAFHLDKSYGE
                     AFTLSMFVRTHRPSGLLLALENGTCQYIRVWLEHGRLAMLTPGSPKSLVKFVLSDGNV
                     HLISLKIKPNRIELYQSSQNLGFISAPTWRLQRGDVLYIGGLPDRQETEVNGGFFKGC
                     IQDIRLNNENLEFFPNSTSNAAQDAVLVNVTQGCPGDNLCEPNPCHNGGICYSLWDDF
                     SCSCPANTAGKACQEVRWCELSPCPPRAQCQGLPRGFECIANAVFNGQNSEILFRSNG
                     NITRELTNITFGFRTRDANAIILHAEKEPGFLNISIRDSQLLFQLQSGNSFYMLSLTS
                     LQSVNDGAWHQVTLSMTDPRAQASRWQMEVDQQTPLVTSAVATGSLSFLKDDINIYVG
                     ERASDNTQGLRGCLSTIEISGIYLSYFENVHGFINKPQEEQFLKISTHPVVTGCLQLN
                     ACNSNPCLHGGHCEDTYSSHHCTCPVGWSGAHCELDIDECLSNPCIHGNCSDRVAGYR
                     CRCEPGYTGVNCESDVDNCQSHLCANGATCISDTSGYSCRCPGNFTGKFCRYTRLPSA
                     ACGNEKTNLTCYNGGNCTEFQGEVKCVCWPGFTGEWCENDIDECASDPCLNGGQCHDL
                     LNKFQCVCDLAFAGARCELDLADNLLSDVFAAIGSVTLALLLILFLAVVASVVASNKR
                     ATQGSYSPSRQEKDGSRVEMWSMTAPPAMERLI"
     misc_feature    801..902
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    912..1019
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1026..1133
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1143..1250
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    <1278..1364
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1368..1538
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(1368..1370,1377..1379,1419..1421)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    1542..1667
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(1542..1544,1551..1553,1593..1595)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    1689..1796
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1893..2306
                     /gene="CRB1"
                     /note="Laminin G domain; Region: Laminin_G_2; pfam02210"
                     /db_xref="CDD:460494"
     misc_feature    2379..2474
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    2580..2933
                     /gene="CRB1"
                     /note="Laminin G domain; Region: Laminin_G_2; pfam02210"
                     /db_xref="CDD:460494"
     misc_feature    3024..3113
                     /gene="CRB1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    3291..3668
                     /gene="CRB1"
                     /note="Laminin G domain; Region: Laminin_G_2; pfam02210"
                     /db_xref="CDD:460494"
     misc_feature    3774..3878
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    3882..3989
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(3882..3884,3891..3893,3930..3932)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    3993..4100
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(3993..3995,4002..4004,4044..4046)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    4242..4352
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(4242..4244,4251..4253,4293..4295)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
ORIGIN      
        1 gccgtctcca caaacgctgc cctgcgtctg aagaacccag ccggacgcag ctaacgcagt
       61 tgcacctaga attcattttt aaatttttat tgtccacaga aaacactgaa aaatgtacat
      121 acaagtatac aactggcagg acaggaaaga aagccgaaac aaaaagaaaa gaaaaaggtc
      181 cacaaggata acttttggag ccaagattgt gcgtttctaa cacagtcgca ggtggtgctg
      241 gtattgctgc tctgaggacc acatgtttag tagcgaggtc ctaggcctgt gactttacag
      301 acacgaggaa aataaggcag aggctgaagc caaataggat gggtgaccag gttggtgaac
      361 ccatgtccga gtcccctgtg gatggaagag ttacagaaaa gttatcgcag acacttgtta
      421 acgattcctt ttgcaataaa aatgacacca agtgcctctc agattcttgc caaaacaatt
      481 ctacatgcaa ggatttttca aaagatggca gttgccattg ttcaggcaca gccattaatt
      541 tggacaaaga ctgtgaccat gaggaagacc cttgcttctc cagtccctgt ccaggaaata
      601 ccacttgtgt gagtgtccca ggagagagga ggtttctgtg cagatgtcct cctgggtaca
      661 gtgggaccac ctgtgacacg gccattgctc cctgtggcac cagctcctgt caacacggag
      721 gcttttgcca tcaggaccct gtgcaccctg tgtgcatctg ccctgctgga tatgccggaa
      781 gattctgtga gctggagcac gatgagtgtg cgtccagccc ctgccacaac ggtgctgtgt
      841 gccaggatgg aatcaatggc tactcctgct tctgtgtccc aggctatcaa ggcaggcact
      901 gcgacttgga agtggacgag tgtgtgtcag acccctgcaa gaacgaggcc acgtgcctca
      961 acgagatagg acggtacact tgcatctgtc cccacgatta ctccggtgta aactgtgaat
     1021 tggaagttga tgaatgtcga tcccagccct gcctcagtgg tgcaacctgt caggatgctg
     1081 tggaggccca tttctgtgac tgtgcccctg gcttcctggg tgctggctgt gagctcagca
     1141 ctgatgagtg tgccagtggg ccgtgtctcc atggagggct gtgcgtggat ggagccaaca
     1201 ggtacagctg taactgcatg ggtagtggat tcacagggac acattgtgag actttgatgc
     1261 ctccatgttg gtcaaaaccc tgtcacaata atgctacatg tgaggacagt gctgacaatt
     1321 acacttgtca ctgctggcct ggatacacgg gggcccagtg tgagaccgac atcgatgaat
     1381 gcagtagtag cccctgccag tctgatgggg aatgcgtgga gctgtcttca ggggaagggc
     1441 atgggcgtct tgcccagctg ctgtctctat ccggccaccc cgaagcctca ggttacatct
     1501 gcatctgtcc acctggactc acaggggtcc actgtgaaga ggacgtcgat gagtgctctt
     1561 caagcccttg ccaaaacggt ggtacctgtg agaacttgcc tgggacttac acttgccatt
     1621 gcccatttga taaccattct ggagcatttt acggaggaag gaactgttct gatttgctcc
     1681 tcagctgtac tgatcaccca tgtctaaata atggaacatg cgtccctcac ctccacaatg
     1741 gccagcatgg attcagctgc ctgtgtccct ctggctatac tgggtcacgg tgtgaaacgg
     1801 tcaccacact ttcttttgag ggtgatggct tcctgtgggt cccgagtggc tcagtgacag
     1861 ccaaggactc cggttgtaca atagccctca ggtttcagac tgtccagcca gtggcacttc
     1921 tactcttccg aggtgacagg gacgtgtttg tggtactgga gctgctcagt ggctacatcc
     1981 acttatcagt tcaagtcagg gatcagccaa aggtggtcct gttcatctcc cacagcacca
     2041 gcgatgggga gtggcatacg gtggaggtga cgtttgcaga ggctgtgacc cttgccttac
     2101 ttgacgagtc ttgcttgggg acatgcatca cgagagctcc ttctccattt ggaagcgatg
     2161 ggtcaacatg tgctttacaa aactcctttt tggggggttt accagaggga acagcccaca
     2221 gtggtgttgc tctgcttaac gtttataata gaccatccat accttcgctt gtgggctgcc
     2281 tccaagatgt tcaacttgac tcgaatccca tcaccctgga gaacatctcg tccggctggt
     2341 cattaaatgt caaggcaggc tgcacgagaa aggactggtg tgagagccaa ccctgtcaca
     2401 acagaggacg ctgcctcaac ttgtggctta gttaccagtg tgattgctac cggccctacc
     2461 gaggccgtag ctgtcacaga gcgtatgtgg caggcagatt tggccaagat gactccacag
     2521 gatatgcggc tttccatctt gacaagagct acggagaggc cttcacgctc tccatgtttg
     2581 ttcggacaca tcgtccatcg ggcttgcttc tagctctgga aaatggcact tgccaataca
     2641 tccgtgtttg gctagagcat ggcagactag caatgctaac tccaggttct cccaaatcat
     2701 tagtaaaatt tgttctcagc gatggaaatg tccacttgat atctttgaaa atcaagccaa
     2761 atagaatcga actgtatcag tcgtcacaaa acctaggatt tatttctgct cctacgtgga
     2821 gactccaaag aggagatgtc ctctacattg gtggactgcc tgacagacag gagactgaag
     2881 ttaatggtgg attcttcaaa ggctgtattc aagatataag gttaaacaac gaaaatctgg
     2941 aattctttcc aaattcaacg agcaacgcag cccaagatgc agttcttgtc aatgtgaccc
     3001 aaggctgtcc cggagacaac ctgtgtgagc ccaacccctg tcacaacgga ggcatctgct
     3061 actccctgtg ggacgacttc tcctgctcct gccctgcgaa cacagccggg aaagcttgcc
     3121 aggaggttcg ctggtgtgaa ctcagcccgt gtcctccccg ggcccaatgc caggggctgc
     3181 ctcgaggatt tgaatgtatc gcaaatgctg tttttaatgg acaaaacagt gagatattat
     3241 tcaggagcaa tgggaatatt accagagaac tcaccaatat cacatttggt ttcagaacaa
     3301 gggacgcaaa tgcgatcata ttgcacgcag agaaggagcc tggattcctt aatattagca
     3361 ttcgggattc ccagttatta tttcagctgc agagtggcaa cagtttttat atgctgagtc
     3421 tgacaagtct gcagtcagtg aatgatggcg cgtggcacca agtgactctc tccatgacag
     3481 acccacgggc ccaggcttcc aggtggcaaa tggaagtgga ccagcaaaca cctcttgtga
     3541 ccagcgcagt ggctactggg agtctcagct tcctgaagga tgatataaac atttatgtgg
     3601 gtgagcgagc tagtgacaac acgcagggcc tgcgagggtg tctaagtaca atagaaatca
     3661 gtggcattta tctctcttac tttgaaaatg ttcatggttt cattaataaa cctcaggagg
     3721 agcagtttct caaaatctct acacatccag tggttactgg ctgtttgcag ttaaacgcct
     3781 gcaattccaa cccctgcttg catggaggac attgtgaaga cacgtacagt tctcatcact
     3841 gcacctgtcc cgtgggatgg tcaggggcac actgtgaact cgacattgat gaatgccttt
     3901 caaacccctg tatccatggc aactgctccg acagagttgc aggctatcgc tgcaggtgtg
     3961 agcctggcta caccggtgtg aactgtgaat cagatgtaga caattgccag agtcacctgt
     4021 gtgcaaacgg ggccacctgc atcagtgaca ccagtggcta ttcttgccgc tgtcctggaa
     4081 atttcacagg aaaattctgc agatacacca gattaccctc agcagcctgt gggaatgaga
     4141 agaccaacct cacgtgctat aacggcggca actgcacaga gttccagggt gaagtaaaat
     4201 gtgtgtgctg gccaggtttc actggggaat ggtgtgaaaa tgacattgat gagtgtgcct
     4261 ccgatccctg cctcaatgga ggccaatgcc acgacttgct gaacaagttc cagtgcgtct
     4321 gtgatttggc cttcgccggc gcgcgctgtg agctggactt ggcagacaac ttgctctcag
     4381 acgtcttcgc cgccatcggt tcagtgactt tagccttgtt gttgatcctc ttcctggcag
     4441 tggtggcctc tgtcgttgcc tccaacaaga gggcaactca ggggtcctac agcccgagcc
     4501 gtcaggaaaa ggatggctct cgcgtggaga tgtggagcat gacggctccc cctgcaatgg
     4561 aaaggctgat ttaggaccat cctgtctctg gaggaagaga tccacacact gcgaatggga
     4621 cacttgtacc tgagtgtttt tctgagaaac ctggagacat caggttacaa ctgcgaccac
     4681 actgaaacca tgggaaggac tcctttgacc actgtataga tgttcatagt ggttcaactt
     4741 gacaccattg ttttattgta ttatgttagc caatcacgga acagtgtttc ttgtgccaat
     4801 aatttcagcc tcataattag gaaaaatacc ttcctgagga tgcgacttct gggaaaaact
     4861 ccagtgcctg acatttacac tctgtactct ttgcaacttg gggacacgtt tttagtttgc
     4921 ccatcagctg gcaactgcat ttttttcaca cagaaactac agaaaaaaaa aaaaatagac
     4981 acatctctca ctcttcctat agcgaaaggt tttagtttgt acctatgagg agatgcacat
     5041 tttttgtcct tcagtcatgg attcgagaaa gttatgggaa agacctatgg ttgaaaagcg
     5101 actcaccatc cacaaataaa aattgaaatg tggttgttcc tctttctgag tatttttttg
     5161 cattttgtga cactacatgg gacaaaagta acctctagga gcatttgaag aacgttttaa
     5221 ctaaatcacc ccaagcgcta tgtttaaagc ccttgtcctt tgtaaggtgt tgcttaaggt
     5281 cgaaacactt tccgaggcag aaaacagaag aaaaggaaac ctcgtgttct caaacctgaa
     5341 agaccaagct ttttccttcc aactgctttt tgataagtca gtgtcagacg gtgaccttgt
     5401 ctaaaggtaa gaaccccaaa
//
LOCUS       XM_032613006            5219 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus crumbs cell polarity complex component 1
            (CRB1), transcript variant X2, mRNA.
ACCESSION   XM_032613006
VERSION     XM_032613006.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5219
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5219
                     /gene="CRB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 10 Proteins, and
                     92% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743883"
     CDS             153..4373
                     /gene="CRB1"
                     /codon_start=1
                     /product="protein crumbs homolog 1 isoform X2"
                     /protein_id="XP_032468897.1"
                     /db_xref="GeneID:116743883"
                     /translation="MALQTVTHLLIFCLSLSLLISIKNSFCNKNDTKCLSDSCQNNST
                     CKDFSKDGSCHCSGTAINLDKDCDHEEDPCFSSPCPGNTTCVSVPGERRFLCRCPPGY
                     SGTTCDTAIAPCGTSSCQHGGFCHQDPVHPVCICPAGYAGRFCELEHDECASSPCHNG
                     AVCQDGINGYSCFCVPGYQGRHCDLEVDECVSDPCKNEATCLNEIGRYTCICPHDYSG
                     VNCELEVDECRSQPCLSGATCQDAVEAHFCDCAPGFLGAGCELSTDECASGPCLHGGL
                     CVDGANRYSCNCMGSGFTGTHCETLMPPCWSKPCHNNATCEDSADNYTCHCWPGYTGA
                     QCETDIDECSSSPCQSDGECVELSSGEGHGRLAQLLSLSGHPEASGYICICPPGLTGV
                     HCEEDVDECSSSPCQNGGTCENLPGTYTCHCPFDNHSGAFYGGRNCSDLLLSCTDHPC
                     LNNGTCVPHLHNGQHGFSCLCPSGYTGSRCETVTTLSFEGDGFLWVPSGSVTAKDSGC
                     TIALRFQTVQPVALLLFRGDRDVFVVLELLSGYIHLSVQVRDQPKVVLFISHSTSDGE
                     WHTVEVTFAEAVTLALLDESCLGTCITRAPSPFGSDGSTCALQNSFLGGLPEGTAHSG
                     VALLNVYNRPSIPSLVGCLQDVQLDSNPITLENISSGWSLNVKAGCTRKDWCESQPCH
                     NRGRCLNLWLSYQCDCYRPYRGRSCHRAYVAGRFGQDDSTGYAAFHLDKSYGEAFTLS
                     MFVRTHRPSGLLLALENGTCQYIRVWLEHGRLAMLTPGSPKSLVKFVLSDGNVHLISL
                     KIKPNRIELYQSSQNLGFISAPTWRLQRGDVLYIGGLPDRQETEVNGGFFKGCIQDIR
                     LNNENLEFFPNSTSNAAQDAVLVNVTQGCPGDNLCEPNPCHNGGICYSLWDDFSCSCP
                     ANTAGKACQEVRWCELSPCPPRAQCQGLPRGFECIANAVFNGQNSEILFRSNGNITRE
                     LTNITFGFRTRDANAIILHAEKEPGFLNISIRDSQLLFQLQSGNSFYMLSLTSLQSVN
                     DGAWHQVTLSMTDPRAQASRWQMEVDQQTPLVTSAVATGSLSFLKDDINIYVGERASD
                     NTQGLRGCLSTIEISGIYLSYFENVHGFINKPQEEQFLKISTHPVVTGCLQLNACNSN
                     PCLHGGHCEDTYSSHHCTCPVGWSGAHCELDIDECLSNPCIHGNCSDRVAGYRCRCEP
                     GYTGVNCESDVDNCQSHLCANGATCISDTSGYSCRCPGNFTGKFCRYTRLPSAACGNE
                     KTNLTCYNGGNCTEFQGEVKCVCWPGFTGEWCENDIDECASDPCLNGGQCHDLLNKFQ
                     CVCDLAFAGARCELDLADNLLSDVFAAIGSVTLALLLILFLAVVASVVASNKRATQGS
                     YSPSRQEKDGSRVEMWSMTAPPAMERLI"
     misc_feature    600..701
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    711..818
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    825..932
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    942..1049
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    <1077..1163
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1167..1337
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(1167..1169,1176..1178,1218..1220)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    1341..1466
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain; Region: EGF_CA;
                     smart00179"
                     /db_xref="CDD:214542"
     misc_feature    order(1341..1343,1350..1352,1392..1394)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    1488..1595
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1692..2105
                     /gene="CRB1"
                     /note="Laminin G domain; Region: Laminin_G_2; pfam02210"
                     /db_xref="CDD:460494"
     misc_feature    2178..2273
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    2379..2732
                     /gene="CRB1"
                     /note="Laminin G domain; Region: Laminin_G_2; pfam02210"
                     /db_xref="CDD:460494"
     misc_feature    2823..2912
                     /gene="CRB1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    3090..3467
                     /gene="CRB1"
                     /note="Laminin G domain; Region: Laminin_G_2; pfam02210"
                     /db_xref="CDD:460494"
     misc_feature    3573..3677
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    3681..3788
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(3681..3683,3690..3692,3729..3731)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    3792..3899
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(3792..3794,3801..3803,3843..3845)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
     misc_feature    4041..4151
                     /gene="CRB1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(4041..4043,4050..4052,4092..4094)
                     /gene="CRB1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
ORIGIN      
        1 agtcttctgt gagggagctg taggagggga aggggcagag gtggcaccca ggggctgtga
       61 gactctggct tctttctgag tcaggcagag ctcgggagct ggacagggac cagaccacca
      121 ccaacacgtc ggagcatgtc ctccacaaga ccatggcgct tcagacagtt acccaccttc
      181 tcatcttctg cctcagtctc tcactgctca tctccataaa aaattccttt tgcaataaaa
      241 atgacaccaa gtgcctctca gattcttgcc aaaacaattc tacatgcaag gatttttcaa
      301 aagatggcag ttgccattgt tcaggcacag ccattaattt ggacaaagac tgtgaccatg
      361 aggaagaccc ttgcttctcc agtccctgtc caggaaatac cacttgtgtg agtgtcccag
      421 gagagaggag gtttctgtgc agatgtcctc ctgggtacag tgggaccacc tgtgacacgg
      481 ccattgctcc ctgtggcacc agctcctgtc aacacggagg cttttgccat caggaccctg
      541 tgcaccctgt gtgcatctgc cctgctggat atgccggaag attctgtgag ctggagcacg
      601 atgagtgtgc gtccagcccc tgccacaacg gtgctgtgtg ccaggatgga atcaatggct
      661 actcctgctt ctgtgtccca ggctatcaag gcaggcactg cgacttggaa gtggacgagt
      721 gtgtgtcaga cccctgcaag aacgaggcca cgtgcctcaa cgagatagga cggtacactt
      781 gcatctgtcc ccacgattac tccggtgtaa actgtgaatt ggaagttgat gaatgtcgat
      841 cccagccctg cctcagtggt gcaacctgtc aggatgctgt ggaggcccat ttctgtgact
      901 gtgcccctgg cttcctgggt gctggctgtg agctcagcac tgatgagtgt gccagtgggc
      961 cgtgtctcca tggagggctg tgcgtggatg gagccaacag gtacagctgt aactgcatgg
     1021 gtagtggatt cacagggaca cattgtgaga ctttgatgcc tccatgttgg tcaaaaccct
     1081 gtcacaataa tgctacatgt gaggacagtg ctgacaatta cacttgtcac tgctggcctg
     1141 gatacacggg ggcccagtgt gagaccgaca tcgatgaatg cagtagtagc ccctgccagt
     1201 ctgatgggga atgcgtggag ctgtcttcag gggaagggca tgggcgtctt gcccagctgc
     1261 tgtctctatc cggccacccc gaagcctcag gttacatctg catctgtcca cctggactca
     1321 caggggtcca ctgtgaagag gacgtcgatg agtgctcttc aagcccttgc caaaacggtg
     1381 gtacctgtga gaacttgcct gggacttaca cttgccattg cccatttgat aaccattctg
     1441 gagcatttta cggaggaagg aactgttctg atttgctcct cagctgtact gatcacccat
     1501 gtctaaataa tggaacatgc gtccctcacc tccacaatgg ccagcatgga ttcagctgcc
     1561 tgtgtccctc tggctatact gggtcacggt gtgaaacggt caccacactt tcttttgagg
     1621 gtgatggctt cctgtgggtc ccgagtggct cagtgacagc caaggactcc ggttgtacaa
     1681 tagccctcag gtttcagact gtccagccag tggcacttct actcttccga ggtgacaggg
     1741 acgtgtttgt ggtactggag ctgctcagtg gctacatcca cttatcagtt caagtcaggg
     1801 atcagccaaa ggtggtcctg ttcatctccc acagcaccag cgatggggag tggcatacgg
     1861 tggaggtgac gtttgcagag gctgtgaccc ttgccttact tgacgagtct tgcttgggga
     1921 catgcatcac gagagctcct tctccatttg gaagcgatgg gtcaacatgt gctttacaaa
     1981 actccttttt ggggggttta ccagagggaa cagcccacag tggtgttgct ctgcttaacg
     2041 tttataatag accatccata ccttcgcttg tgggctgcct ccaagatgtt caacttgact
     2101 cgaatcccat caccctggag aacatctcgt ccggctggtc attaaatgtc aaggcaggct
     2161 gcacgagaaa ggactggtgt gagagccaac cctgtcacaa cagaggacgc tgcctcaact
     2221 tgtggcttag ttaccagtgt gattgctacc ggccctaccg aggccgtagc tgtcacagag
     2281 cgtatgtggc aggcagattt ggccaagatg actccacagg atatgcggct ttccatcttg
     2341 acaagagcta cggagaggcc ttcacgctct ccatgtttgt tcggacacat cgtccatcgg
     2401 gcttgcttct agctctggaa aatggcactt gccaatacat ccgtgtttgg ctagagcatg
     2461 gcagactagc aatgctaact ccaggttctc ccaaatcatt agtaaaattt gttctcagcg
     2521 atggaaatgt ccacttgata tctttgaaaa tcaagccaaa tagaatcgaa ctgtatcagt
     2581 cgtcacaaaa cctaggattt atttctgctc ctacgtggag actccaaaga ggagatgtcc
     2641 tctacattgg tggactgcct gacagacagg agactgaagt taatggtgga ttcttcaaag
     2701 gctgtattca agatataagg ttaaacaacg aaaatctgga attctttcca aattcaacga
     2761 gcaacgcagc ccaagatgca gttcttgtca atgtgaccca aggctgtccc ggagacaacc
     2821 tgtgtgagcc caacccctgt cacaacggag gcatctgcta ctccctgtgg gacgacttct
     2881 cctgctcctg ccctgcgaac acagccggga aagcttgcca ggaggttcgc tggtgtgaac
     2941 tcagcccgtg tcctccccgg gcccaatgcc aggggctgcc tcgaggattt gaatgtatcg
     3001 caaatgctgt ttttaatgga caaaacagtg agatattatt caggagcaat gggaatatta
     3061 ccagagaact caccaatatc acatttggtt tcagaacaag ggacgcaaat gcgatcatat
     3121 tgcacgcaga gaaggagcct ggattcctta atattagcat tcgggattcc cagttattat
     3181 ttcagctgca gagtggcaac agtttttata tgctgagtct gacaagtctg cagtcagtga
     3241 atgatggcgc gtggcaccaa gtgactctct ccatgacaga cccacgggcc caggcttcca
     3301 ggtggcaaat ggaagtggac cagcaaacac ctcttgtgac cagcgcagtg gctactggga
     3361 gtctcagctt cctgaaggat gatataaaca tttatgtggg tgagcgagct agtgacaaca
     3421 cgcagggcct gcgagggtgt ctaagtacaa tagaaatcag tggcatttat ctctcttact
     3481 ttgaaaatgt tcatggtttc attaataaac ctcaggagga gcagtttctc aaaatctcta
     3541 cacatccagt ggttactggc tgtttgcagt taaacgcctg caattccaac ccctgcttgc
     3601 atggaggaca ttgtgaagac acgtacagtt ctcatcactg cacctgtccc gtgggatggt
     3661 caggggcaca ctgtgaactc gacattgatg aatgcctttc aaacccctgt atccatggca
     3721 actgctccga cagagttgca ggctatcgct gcaggtgtga gcctggctac accggtgtga
     3781 actgtgaatc agatgtagac aattgccaga gtcacctgtg tgcaaacggg gccacctgca
     3841 tcagtgacac cagtggctat tcttgccgct gtcctggaaa tttcacagga aaattctgca
     3901 gatacaccag attaccctca gcagcctgtg ggaatgagaa gaccaacctc acgtgctata
     3961 acggcggcaa ctgcacagag ttccagggtg aagtaaaatg tgtgtgctgg ccaggtttca
     4021 ctggggaatg gtgtgaaaat gacattgatg agtgtgcctc cgatccctgc ctcaatggag
     4081 gccaatgcca cgacttgctg aacaagttcc agtgcgtctg tgatttggcc ttcgccggcg
     4141 cgcgctgtga gctggacttg gcagacaact tgctctcaga cgtcttcgcc gccatcggtt
     4201 cagtgacttt agccttgttg ttgatcctct tcctggcagt ggtggcctct gtcgttgcct
     4261 ccaacaagag ggcaactcag gggtcctaca gcccgagccg tcaggaaaag gatggctctc
     4321 gcgtggagat gtggagcatg acggctcccc ctgcaatgga aaggctgatt taggaccatc
     4381 ctgtctctgg aggaagagat ccacacactg cgaatgggac acttgtacct gagtgttttt
     4441 ctgagaaacc tggagacatc aggttacaac tgcgaccaca ctgaaaccat gggaaggact
     4501 cctttgacca ctgtatagat gttcatagtg gttcaacttg acaccattgt tttattgtat
     4561 tatgttagcc aatcacggaa cagtgtttct tgtgccaata atttcagcct cataattagg
     4621 aaaaatacct tcctgaggat gcgacttctg ggaaaaactc cagtgcctga catttacact
     4681 ctgtactctt tgcaacttgg ggacacgttt ttagtttgcc catcagctgg caactgcatt
     4741 tttttcacac agaaactaca gaaaaaaaaa aaaatagaca catctctcac tcttcctata
     4801 gcgaaaggtt ttagtttgta cctatgagga gatgcacatt ttttgtcctt cagtcatgga
     4861 ttcgagaaag ttatgggaaa gacctatggt tgaaaagcga ctcaccatcc acaaataaaa
     4921 attgaaatgt ggttgttcct ctttctgagt atttttttgc attttgtgac actacatggg
     4981 acaaaagtaa cctctaggag catttgaaga acgttttaac taaatcaccc caagcgctat
     5041 gtttaaagcc cttgtccttt gtaaggtgtt gcttaaggtc gaaacacttt ccgaggcaga
     5101 aaacagaaga aaaggaaacc tcgtgttctc aaacctgaaa gaccaagctt tttccttcca
     5161 actgcttttt gataagtcag tgtcagacgg tgaccttgtc taaaggtaag aaccccaaa
//
LOCUS       XM_032613017             881 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus basic leucine zipper ATF-like
            transcription factor 3 (BATF3), mRNA.
ACCESSION   XM_032613017
VERSION     XM_032613017.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..881
                     /gene="BATF3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743899"
     CDS             212..580
                     /gene="BATF3"
                     /codon_start=1
                     /product="basic leucine zipper transcriptional factor
                     ATF-like 3"
                     /protein_id="XP_032468908.1"
                     /db_xref="GeneID:116743899"
                     /translation="MSQGLPAAGSVLQRSFTAPGNQAQPQSPEDDDRKVRRREKNRVA
                     AQRSRKKQTQKADKLHEEYECLEQENTVLRREIGKLTEELKHLSELLKEHEKICPLLL
                     CPVNFVPVPRLDPVAGCLPR"
     misc_feature    302..475
                     /gene="BATF3"
                     /note="Basic leucine zipper (bZIP) domain of BATF
                     proteins: a DNA-binding and dimerization domain; Region:
                     bZIP_BATF; cd14701"
                     /db_xref="CDD:269849"
     misc_feature    308..472
                     /gene="BATF3"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269849"
     misc_feature    order(320..325,329..337,341..358,362..370)
                     /gene="BATF3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269849"
     misc_feature    order(365..367,374..379,386..391,395..400,407..412,
                     416..421,428..433,437..442,449..454,458..463)
                     /gene="BATF3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269849"
ORIGIN      
        1 gttgcgcagc gggcgctgga gccgggaaag cgggaagccc gagggggcgc ggcagaggcg
       61 gcggccggca ggtgctgggg cgcggggatg ccggtggctg gagagagccg gtaggcagct
      121 ccccgcgtgc agggcgcgcc gggccgcgcg gccgcttctc tgctaggctg cgcggcgggg
      181 cgggccgggc cgggccggag aagcgcgcgg catgtcgcaa gggctcccgg ccgctggcag
      241 cgtcctgcag aggagcttca cggctccggg gaaccaggcg cagccgcaga gccctgagga
      301 tgatgacagg aaggtccgaa ggagggaaaa aaaccgagtt gctgctcaga gaagccggaa
      361 gaagcagacc cagaaggctg acaaactcca tgaggagtat gagtgcctgg agcaagaaaa
      421 cacagtgctg cggagagaga tcgggaagct gacggaggag ctgaagcacc tgagcgagtt
      481 gttgaaggag cacgagaaga tatgcccgct gctgctctgc cccgtgaact ttgtaccggt
      541 gccgcggctg gaccccgtgg ctggctgcct gccccggtga agcccagaga cggtcctcct
      601 ctgcccagca aggagcgttg gtctttttca cacctgggaa gaggcttccc tctgcatcca
      661 tgtaccgggg gacctgtggc tgggtcagct cttcggagct gcgggccgtg tccccagcag
      721 cccaggctca gcgtgacgct ctcacaggcc cctgactcag agcctttagc ggatccaggc
      781 agggaggcca tcctcaggaa tcgctgcgca tccactttgg cagctagtag gttccgtttt
      841 tgtgcagaat catttcctct agcacatgga taataaaggt g
//
LOCUS       XM_032613031             720 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity phosphatase 23 (DUSP23),
            mRNA.
ACCESSION   XM_032613031
VERSION     XM_032613031.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..720
                     /gene="DUSP23"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743903"
     CDS             33..485
                     /gene="DUSP23"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 23"
                     /protein_id="XP_032468922.1"
                     /db_xref="GeneID:116743903"
                     /translation="MGVQPPNFSWVLPGRLAGLALPRLPAHYQFLLDQGVRHLVSLTE
                     RGPPHSDSCPGLTLHRLRIPDFCSPGPEQIDRFVKIVDEANARGEAVGVHCALGFGRT
                     GTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQRRK"
     misc_feature    54..476
                     /gene="DUSP23"
                     /note="dual specificity phosphatase 23; Region: DUSP23;
                     cd14504"
                     /db_xref="CDD:350354"
ORIGIN      
        1 ccacgtggct ccaggaggcg ccagtgctag ccatgggcgt gcagcccccc aacttctcat
       61 gggtgctccc cggccggctg gcggggctgg ccctgccccg gctccccgcc cactaccagt
      121 tcctgctgga ccagggtgtg cggcacctgg tgtcactgac ggagcgcggg cccccgcaca
      181 gcgacagctg ccccggcctc accctgcacc gactgcgcat cccagacttc tgctcgccgg
      241 gcccagagca gatagaccgc ttcgtgaaga ttgtcgacga ggccaacgcc aggggagagg
      301 cggtgggagt gcactgtgcc ctgggctttg gccgcacggg taccatgctg gcttgttacc
      361 tggtgaagga gcggggcctg gctgcagggg acgccatcgc tgagatccgg cgccttcgac
      421 ccggctccat cgagacgtat gagcaagaga aggcagtctt ccagttctac cagcgaagga
      481 aataagggac ctcagcactc ttctgccagg ccccccgcgg ccctgacctg tgtattagat
      541 ggggccagag atgcggaagt gaactcaaag tgctaagccc tccagcggtc aaaagacaga
      601 tgtagccctt ccctgcaggc aggtcctggt aggaggatgg ctggagcagc accaatgtgg
      661 ggtgtccctc tgccactgcc ttgaataaat aaagaaccag ctcacattgc atagcacttt
//
LOCUS       XM_032613043             288 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus C-reactive protein (CRP), mRNA.
ACCESSION   XM_032613043
VERSION     XM_032613043.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..288
                     /gene="CRP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 62% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743910"
     CDS             1..276
                     /gene="CRP"
                     /codon_start=1
                     /product="C-reactive protein"
                     /protein_id="XP_032468934.1"
                     /db_xref="GeneID:116743910"
                     /translation="MEKLSLCFLVMISLPNAFSQTDMHTKVFVFPKESDNSVVTLTAQ
                     LTKPLKALTVCLHVYTDLSGTFSPNVLDWWALKYKTHGEGLPWWRSG"
     misc_feature    76..>201
                     /gene="CRP"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; Region: LamG; cl22861"
                     /db_xref="CDD:473984"
ORIGIN      
        1 atggagaagc tgtcactgtg tttcctggtc atgattagcc tccctaatgc tttttcccag
       61 acagatatgc acacaaaggt ctttgtgttc cccaaagagt cggataattc cgttgtgacg
      121 ctgactgcac agctaacaaa gccacttaag gccttgaccg tgtgcctgca tgtctatacc
      181 gatctgagtg ggaccttcag tcctaatgtc ctggactggt gggcactgaa gtataaaaca
      241 cacggtgagg gacttccctg gtggcgcagt ggttaagtat ccacctgc
//
LOCUS       XM_032613056            1617 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf52 homolog (C1H1orf52),
            mRNA.
ACCESSION   XM_032613056
VERSION     XM_032613056.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1617
                     /gene="C1H1orf52"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 3
                     Proteins, and 91% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743915"
     CDS             467..1015
                     /gene="C1H1orf52"
                     /codon_start=1
                     /product="UPF0690 protein C1orf52 homolog"
                     /protein_id="XP_032468947.1"
                     /db_xref="GeneID:116743915"
                     /translation="MAAEEKDPLSYFAAYGSSSSGSSDEEDNSEPEETSRKASDPAKS
                     AGGCGNKAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKS
                     NYVPPPETYSTEKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETVESDD
                     EKEEHTSKKRKIEPGEPTKKKK"
     misc_feature    563..847
                     /gene="C1H1orf52"
                     /note="Domain of unknown function (DUF4660); Region:
                     DUF4660; pfam15559"
                     /db_xref="CDD:464769"
ORIGIN      
        1 gattcactct gggacttggt aagtccactt acccatagag gtgttccatg acaactgagg
       61 gaagcacatt gagagtaatt ttatttcgag gaagagatgc agcaggatca gaaagaaatc
      121 ctgatctctc tgggcaaggg ctttaaggtg gcggtgaaaa gacaaaattt ttagcttttc
      181 tgtgccttta ataaattctt actgaatctg aaagtttggt tggaccacta cctgaggatc
      241 tgtctcttct caggggtcct cagaaaagag cattagaaac ctctgattga ggacgtgtgc
      301 ggccccgcct ccagtccttc agcccggccg cagtatcacg gcgcagccgc cagggggtgc
      361 agactccggg cccatcagca agacttgggg cggggccaac tgcggggcgg gccctggcac
      421 ggcttccggt ttccggcgga gccatcgatc gacgcgcgca gccgtcatgg cagcggagga
      481 gaaggatcct ctgagctatt tcgcggctta cgggagcagc agctcaggct cctcggacga
      541 ggaggataac agcgagccgg aggagacaag tcgtaaggcc tcggatccgg cgaagtcggc
      601 gggcggctgt gggaacaagg cggagaagcg gctgcctgga cccgacgagc tgttccggag
      661 cgtgactcgc ccggcctttc tctacaatcc gctcaacaaa cagatcgact gggagaggca
      721 cgtcgtcaag gcgccagagg agcctccgaa ggaattcaaa atatggaagt caaactatgt
      781 accacctccg gagacctact ctactgagaa gaagcctccc cctccagagt tggatatggc
      841 aataaaatgg tctaacatat atgaggacaa tggtgacgat gccccacaga atgctaagaa
      901 agctaggctt ctcccagaag gggaggagac agtggaatca gatgatgaaa aagaagagca
      961 tacttctaaa aagcgcaaaa tagaaccggg agaaccaaca aagaagaaaa aatagaaaat
     1021 aaatgacaag aatttttgga ctgtgaaact ttgttgaaat gaattttttt ggcagattaa
     1081 attgattgta aaattgtaaa ttattatgaa acaacatctc catgaaagta tatgttaatt
     1141 aactaatgag ttttggtgca agaaccttcc actgtagaat tcatttttta tttaaaactt
     1201 atatgtattt aaaaatcaaa tggtgacttg tgattgtgaa attgacaaca cttggaagca
     1261 ttcttgctac cacagaattg gtgacatgct ttgagtttca tcccatgttg acatgccaat
     1321 gttctatgaa ccttttataa aggagtatat ttttaaagta aatatattgt actgtgaact
     1381 tgtagggtgc ttttcagcag tgtttgtaca gtgtaaatag atcatggaaa taaaattacc
     1441 aatattacta ttactgcata acattaacat ttgaatattt gtgacaagta ccctctttgc
     1501 catgtgacat tctgatagtg ggtattacca tttagggagt gcctcctgtg ttccaagtgc
     1561 tttgtgcata tattatctct gatcctcagc ctaataaagc aggtattaat agcctca
//
LOCUS       XM_032613070            2996 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 19 member 2
            (SLC19A2), mRNA.
ACCESSION   XM_032613070
VERSION     XM_032613070.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2996
                     /gene="SLC19A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743921"
     CDS             214..1707
                     /gene="SLC19A2"
                     /codon_start=1
                     /product="thiamine transporter 1"
                     /protein_id="XP_032468961.1"
                     /db_xref="GeneID:116743921"
                     /translation="MDVPGPVTRRAAAAAATMLLRTARVPRECWFVPTALLCAYGFFA
                     SLRPSEPFLTPYLLGPDKNLTKREVFNEIYPVWTYSYLVLLFPVFLATDFLRYKPVVL
                     LQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVVDLSMYQKVTSY
                     CRSATLVGFTVGSVLGQILVSVAGWSLFSLNVISLTCVSVAFAIAWFLPMPQKSLFFH
                     HVPPSCQGANGVKVHNGGIATDTSASNHLPQWEDVESKIPLNTEEPPMEGQESKPDRL
                     LVLKVLWNDFLVCYSSRPLLCWSVWWALSTCGYFQVVNYAQGLWEQVMPSRHAAIYNG
                     GVEAVSTLLGAVAVFAVGYIKLSWSTWGELTLSLFSLLIAAAVYIMDTVGNIWVCYAS
                     YVVFRIIYMLLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGL
                     EITPQFFIYAGYFALIAVVFLTNGAVNILKKYRKPQDPESSSQVTTS"
     misc_feature    295..1587
                     /gene="SLC19A2"
                     /note="Reduced folate carrier; Region: Folate_carrier;
                     pfam01770"
                     /db_xref="CDD:460318"
ORIGIN      
        1 gtggcgactc gggaggttct cgcaatcagg aaaggctggg agtcattgcg atcagaggcg
       61 gctgtctcag aactgcttgg tcctaccggg aggaggcgcc actcgcaatt gcaggtgcct
      121 gcgctggggc agcgattcaa cctcactccg gttggccgag gaggaaaagg agaaggaaag
      181 ggccgggctg ggtccccgcc cctcgcgccc cagatggatg tgcctggccc ggtgacacgg
      241 cgggcggcgg cggcggcggc caccatgctc ctgcgcacgg ctcgggtccc gcgcgagtgc
      301 tggttcgtgc ccaccgcgct gctctgcgcc tacggcttct tcgccagcct ccggccgtcc
      361 gagcccttct tgaccccgta cctgctgggg cccgacaaga acctgacgaa gagagaggtc
      421 ttcaatgaaa tatatccagt atggacttac tcttacctgg tgctgttgtt tcctgtgttc
      481 ctcgccacag acttcctccg ttataaacct gttgttctgc tgcagggact cagccttatt
      541 gttacatggt tcatgctgct ctatgcccag ggactgctgg ccattcagtt cttggaattc
      601 ttctatggca tcgccacagc cactgaaatt gcctattact cctacatcta cagtgtggta
      661 gacctgagca tgtaccagaa agtcacgagt tactgtcgaa gtgccacctt ggtgggcttc
      721 acagtgggct ctgtcctagg gcagatcctc gtctcagtgg caggctggtc cctattcagc
      781 ctgaatgtca tctctcttac ctgtgtttct gtggctttcg ctatagcctg gtttctccct
      841 atgccacaga agagtctttt ctttcaccac gttcctccct cctgccaagg agcaaatggc
      901 gtcaaggtac acaatggtgg cattgctact gatacctcag cttctaacca ccttccgcag
      961 tgggaggacg ttgaatcaaa aatccctcta aatacagagg agcctcccat ggagggacag
     1021 gaatccaagc cagaccgtct ccttgtgctg aaggtcctgt ggaatgattt cctggtgtgc
     1081 tactcttctc gccctctgct ctgctggtcc gtgtggtggg ccctctccac ctgcggctat
     1141 tttcaagtcg tgaactatgc acagggcctg tgggagcagg tgatgccttc tcgtcatgct
     1201 gccatctata acggtggcgt ggaggccgtt tcaaccttac tgggtgctgt tgctgtgttt
     1261 gcagttggtt acataaaatt atcctggtcc acttggggag aattgacatt gtctctgttt
     1321 tctctcctga ttgctgctgc agtgtatatc atggacaccg tgggtaacat ttgggtgtgc
     1381 tacgcatcct acgttgtctt cagaatcatc tacatgttac tcatcactat agcaactttt
     1441 cagattgctg caaacctcag catggagcgc tatgccctag tgtttggtgt aaataccttc
     1501 atcgctctgg cactgcagac tctgctcact ctaattgtgg tagatgccag cggccttggc
     1561 ttggaaatta cccctcagtt cttcatctac gctggttatt ttgcactcat tgctgtggtt
     1621 ttcctgacta atggtgcagt caatattttg aagaaataca gaaagcccca agatccagaa
     1681 tcaagttctc aagtgaccac ttcataacac actgctaatg agcttcttat cacaagaact
     1741 ctgcacagca gctgtgcctg gatgtattta attttttaaa gtgtagacac ctatttatga
     1801 gtgtgcattt catggcttca aagcagccaa ttgactatac cttgtcctcc tagagtaaca
     1861 gaatactgtt cagaagtgaa gtgtacttca tggattattt acgagagccg atataaggat
     1921 gacttttttc tgatttgaaa gtgagcttgc ttttgaaaac caagtaatca agagccatca
     1981 agcagcacat ggtgatgtat acttgctagc aagtgagtct ggtgtttcat aggtcaagta
     2041 cttctgtatc agattagcca gatgcttggc ctggtgggac cagggcttca caggggccac
     2101 aggtgtcaca ggtcaggaca gaaatatgtt ctaatagcac ctgcctctgt tcaacttaat
     2161 tcttatttct gtgttattca cgtgcgtttg tgtttctgca ggtgaaagtt gttcctatca
     2221 ctgacaatat gtgctctggt ttggtgtttt ataaggcata tgtgtcgttt ctaatttatt
     2281 ttaaaaaatt cattgtgtaa atattctcaa ttcccatctt gacaattatg tattcgtgtg
     2341 gatttttcat ttttacatta ttcatatgct tcctagagaa gctaatttag ttaaataata
     2401 aggcaagttt tgaggcctgc taaaaatcta agtgacctaa tcagaaaact tgaggcaggt
     2461 ttgcttgtct tttattcttc agtatgaagg actattaatt ctatgatgaa gagttactaa
     2521 atgggctaaa gatacaacta acccattttg tatttgcact tttatctcca aaataaaatg
     2581 gaaaagtctt tttaaaaata acttcatctc catttatagc ttttatatta tttatccttc
     2641 ttattcaaga taaagatgtc gttaagagtt ggatcattcc aaggtctttt tcacaaactg
     2701 agcctcttat taattatttt ggtgggacag gaactaggat agacttagtt cctgtatttt
     2761 gtacattaaa tctgcctttg tttctaaagg tggatcatct tgaatatctg cttaaaataa
     2821 gaattgctac tgattcagtt tccaggttac ttgaaagaaa tgttattctg tgcacattta
     2881 attgggaagt tagtctacca agtggctgct agcctgagac gtaactattt tgaagccaat
     2941 tttgttgcct aatcataaaa aaaaaaaaat aaaaataaac taggttaact ttttta
//
LOCUS       XR_004346921             243 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743923
            (LOC116743923), transcript variant X1, ncRNA.
ACCESSION   XR_004346921
VERSION     XR_004346921.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..243
                     /gene="LOC116743923"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116743923"
     ncRNA           1..243
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743923"
                     /product="uncharacterized LOC116743923, transcript variant
                     X1"
                     /db_xref="GeneID:116743923"
ORIGIN      
        1 attatgcttc gttgcttaga tgtttggagt attgggatga atattaggat gaggatggaa
       61 agtagtagtg ctagtactcc tcctagttta ttagggattg attgtagaat tgcgtatgca
      121 aatagaaagt atcattctgg tttaatgtgt gctggggtgc ttagtgggtt tgctggggtg
      181 tagttgtcag ggtctcctag taggtcgggt gtgaacaggg ttagtgggat cggaagagca
      241 cac
//
LOCUS       XR_004346923             260 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743923
            (LOC116743923), transcript variant X2, ncRNA.
ACCESSION   XR_004346923
VERSION     XR_004346923.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..260
                     /gene="LOC116743923"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116743923"
     ncRNA           1..260
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743923"
                     /product="uncharacterized LOC116743923, transcript variant
                     X2"
                     /db_xref="GeneID:116743923"
ORIGIN      
        1 attatgcttc gttgcttaga tgtttggagt attgggatga atattaggat gaggatggaa
       61 agtagtagtg ctagtactcc tcctagttta ttagggattg attgtagaat tgcgtatgca
      121 aatagaaagt atcattctgg tttaatgtgt gctggggtgc ttagtgggtt tgctggggtg
      181 tagttgtcag ggtctcctag taggtcgggt gtgaacaggg ttagtgcgag tagggttaag
      241 attaaatcgg aagagcacac
//
LOCUS       XR_004346924             239 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743923
            (LOC116743923), transcript variant X3, ncRNA.
ACCESSION   XR_004346924
VERSION     XR_004346924.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..239
                     /gene="LOC116743923"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116743923"
     ncRNA           1..239
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743923"
                     /product="uncharacterized LOC116743923, transcript variant
                     X3"
                     /db_xref="GeneID:116743923"
ORIGIN      
        1 attatgcttc gttgcttaga tgtttggagt attgggatga atattaggat gaggatggaa
       61 agtagtagtg ctagtactcc tcctagttta ttagggattg attgtagaat tgcgtatgca
      121 aatagaaagt atcattctgg tttaatgtgt gctggggtgc ttagtgggtt tgctggggtg
      181 tagttgtcag ggtctcctag taggtcgggt gtgaacaggg ttaaatcgga agagcacac
//
LOCUS       XR_004346926             295 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743929
            (LOC116743929), ncRNA.
ACCESSION   XR_004346926
VERSION     XR_004346926.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..295
                     /gene="LOC116743929"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116743929"
     ncRNA           1..295
                     /ncRNA_class="lncRNA"
                     /gene="LOC116743929"
                     /product="uncharacterized LOC116743929"
                     /db_xref="GeneID:116743929"
ORIGIN      
        1 gaaggcatgg gagccatagt ataggccaca tccaatgtga gcataaaggc agatgaagaa
       61 tatagaggct ccgtctgcat gtaggtatcg aatgattcag ccgtaattaa cgtctcggca
      121 gatgtgtgtg tgacggatga gaaggcagtt gaggtgtctg gtgtgtagtg tattgctagg
      181 aataggcctg ttaagatttg tatgattagg cagagaccga gtagggagcc aaaatttcat
      241 catgaagaga tatttgatgg ggtggggaga tcaataaatg cgttgtttag agatc
//
LOCUS       XM_032613108             717 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fatty-acid amide hydrolase 1-like
            (LOC116743934), mRNA.
ACCESSION   XM_032613108
VERSION     XM_032613108.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..717
                     /gene="LOC116743934"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116743934"
     CDS             43..507
                     /gene="LOC116743934"
                     /codon_start=1
                     /product="fatty-acid amide hydrolase 1-like"
                     /protein_id="XP_032468999.1"
                     /db_xref="GeneID:116743934"
                     /translation="MPGETLRDCRNRGSRHLSDDRSSPTGGISARVHSQVDVPGPGRV
                     AGTSSGDPAYYIGYPAMASSRSSYLALYNILNFPAGVVPVTTVMLQDEEELAFCRGYY
                     RDRSKKDFQEVVRGSVALSAAVQGTALPREEELCLQFMKEVEALVKKHRESK"
ORIGIN      
        1 ccaagaaact gtgagagcag cacacagcag tggaggcgat gtatgcctgg ggagaccttg
       61 agggactgcc ggaacagggg cagcagacac ctgagtgatg acaggagtag cccaacagga
      121 ggaatatcag caagagttca tagccaagtg gatgtccctg gacctggacg tgttgctggc
      181 accagctctg gagaccctgc ctactatatc ggctatcctg ccatggcatc aagtagatct
      241 tcctacctgg ccctgtacaa catcctgaat ttccctgccg gtgtggtgcc cgtcaccacc
      301 gtgatgctac aggatgagga ggaactggcc ttctgcaggg gctactacag agatcgttcc
      361 aaaaaagatt tccaggaggt ggtgagagga tctgtggcgc tttcggcggc tgtgcagggc
      421 accgctttgc cacgagaaga ggaactgtgt ctccagttca tgaaggaggt ggaggccttg
      481 gtcaagaagc acagggaatc caagtgacaa gacactcctt ctcctggagg cctttctaca
      541 tcctcactta agtctgcact cgatgtccct tccttctcat gaataccaga tctgcctcat
      601 ttctcctcct cctggaagcc caccagagat tttctttgtt atccctctgc gtgtctgctc
      661 aatacagaca ccccagatta tcccaagata gggagcagga tgaagcgctt aataaac
//
LOCUS       XM_032613123             725 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf53 homolog (C1H1orf53),
            mRNA.
ACCESSION   XM_032613123
VERSION     XM_032613123.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-377               VOSU01000011.1     181547008-181547384
            378-431             VOSU01000011.1     181550389-181550442
            432-432             "N"                1-1
            433-479             VOSU01000011.1     181550443-181550489
            480-725             VOSU01000011.1     181551779-181552024
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..725
                     /gene="C1H1orf53"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 81% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:116743937"
     CDS             114..551
                     /gene="C1H1orf53"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     C1orf53 homolog"
                     /protein_id="XP_032469014.1"
                     /db_xref="GeneID:116743937"
                     /translation="MAAWRVPASVGAALGRQPSAAPPPEPPRVGEAFRQRLSFTLCSA
                     SQGDRGGSGPDSQGGPEGAATHPASKELTAAERRISELHAAACAAGRLNYVDPATGYM
                     VLTRXAHLQRGRCCGSTCRHCPYGQVNVKDPSKKKQFNSHFYV"
     misc_feature    357..500
                     /gene="C1H1orf53"
                     /note="Family of unknown function (DUF5522); Region:
                     DUF5522; pfam17653"
                     /db_xref="CDD:435947"
ORIGIN      
        1 tcgagggtcg gagggcgggg tccggggtgg cgggtctggg ccctgcctgg ctctgcggga
       61 gcagtacgga ccgccccttg gccccagcgc cccgcctccc acaggcggca gccatggcgg
      121 cctggcgggt cccggcgtcc gtgggcgctg cgctcgggag gcagccgtcc gccgccccgc
      181 cgccagaacc gccccgggtt ggagaagcgt tccgacagcg cctcagcttc accctctgct
      241 ccgcttcgca gggagaccgc ggcggctctg ggcccgactc gcagggcggg ccggagggag
      301 cagcgacgca tccggcgagc aaagagttaa cagcggcgga gcggaggatc tcggagcttc
      361 acgccgccgc ctgcgcggct ggccggctga actacgtgga cccagctacc ggctacatgg
      421 tgctcacccg gnctgcccac ttgcagagag gcagatgctg cggctctacc tgcagacact
      481 gtccatatgg tcaagtcaat gttaaagatc catccaaaaa gaagcaattc aattcacatt
      541 tttatgtttg agaagaattt catttctgtt ctccatctaa ttgagcctta ttaaaaaata
      601 aataaaacct taatccagaa ttgctttgtg tgctgttagt agttgggcac tagtttaatc
      661 ttaaacttaa gcatatatta atcttaaaca tgtattaaaa gaacatcaat aaaacgaaaa
      721 agcta
//
LOCUS       XM_032613138            1868 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin like 1 (SYTL1), transcript
            variant X1, mRNA.
ACCESSION   XM_032613138
VERSION     XM_032613138.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1868
                     /gene="SYTL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743940"
     CDS             82..1776
                     /gene="SYTL1"
                     /codon_start=1
                     /product="synaptotagmin-like protein 1 isoform X1"
                     /protein_id="XP_032469029.1"
                     /db_xref="GeneID:116743940"
                     /translation="MPQRGHPSQKGLWSLPGLLMAHEPQPEADGLLDLSFLTEEEQEA
                     IAKVLKRDACLRQLEEGRVSKLRTSLADPGQLKILTGDWFQEARFQRHHHAHLGSDLV
                     RASIRRRKGSRGDQAQGSDGEAQAAGKETEEALEPRLPMDEAPQERFSEAEGPDFPSP
                     YVPPKASDHEEEPQAQEAPGPGGVQAFAAEEADPELEPPSRGEEPQPPPAQTQEASEI
                     LENGEEAPGPDLSLDRVLSSSSSTPSLNSSTLSSSRTSLSGEAEAGAVQVRGSLYFAL
                     RYEPGNAQLRVHVIQCQGLAAARRRRSDPYVKSKLLPDKQSKRKTSVKKRNLNPVFNE
                     TLWYSVPQAELRGRVLSLSVWHRESLGRNIFLGEVEVPLDTWDWDSEPTWLPLQPRVP
                     PSPDDLPSRGLLSLSLKYVPAGSEGAGLPSSGELHFWVKEAQDLVPLRPGSLDTYIQC
                     LVLPDDSQASRQRTRVVRRSLSPTFNHTMVYDGFGPADLRQACAELSLWDHGPLASRQ
                     LGGTRLSLGTGSSYGLQVPWMDSTPEERQLWQTLLERPCEWVHGLLPLRTNLAPRT"
     misc_feature    184..>378
                     /gene="SYTL1"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    <412..>768
                     /gene="SYTL1"
                     /note="hypothetical protein; Provisional; Region:
                     PHA03169"
                     /db_xref="CDD:223003"
     misc_feature    886..1245
                     /gene="SYTL1"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
     misc_feature    1282..1752
                     /gene="SYTL1"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; Region: C2B_SLP_1-2-3-4;
                     cd04020"
                     /db_xref="CDD:175987"
ORIGIN      
        1 tttgcagcac tcggcctcca ccaccaggtc ccaccccagc cagggagcca tgtgtgccca
       61 gcctggccgc tgccccagct gatgccccag aggggccacc catctcaaaa ggggctctgg
      121 tccctgcctg gcctcctcat ggcacatgag ccacagcctg aggctgatgg gctattggat
      181 ctcagcttcc tgacagagga ggagcaagag gctattgcca aggtcctgaa gcgagatgcc
      241 tgcctgcgcc agctggagga gggacgggtc agcaagctcc ggacatcgct ggcagaccct
      301 gggcagctga agatccttac aggcgactgg ttccaggaag cacgcttcca gcggcaccac
      361 cacgcccacc ttggctctga ccttgttcgt gcctccatcc gcaggaggaa gggctccagg
      421 ggagaccagg ctcagggcag cgatggggaa gcacaggctg ctgggaaaga gaccgaagag
      481 gcactggagc ccaggctccc catggacgag gccccccaag agaggttcag cgaggctgag
      541 ggacctgatt tcccctcacc atatgtcccc ccaaaggctt cagatcatga agaggagccc
      601 caggcccaag aagcccctgg ccccgggggc gttcaggcct tcgccgcgga ggaggctgac
      661 cctgagctgg agcctccgtc gaggggagag gagccgcagc ccccgcctgc ccagacccag
      721 gaggcgtccg agatcctgga gaatggggag gaggccccgg ggcccgacct gtcactcgac
      781 cgcgtgctca gcagcagctc ctccacgccc agcctcaact cctccacgct gagcagcagc
      841 cgaacgagcc tgtccgggga ggcggaggcg ggcgcggtgc aggtgcgcgg ctccctgtac
      901 ttcgcgctgc gctacgagcc tggtaacgcc cagctgcgcg tgcacgtgat ccagtgccag
      961 ggcctggccg ccgcccggcg ccgccgctcc gacccctacg tcaaaagcaa actcctcccg
     1021 gataagcaga gcaagcgcaa gacctcagtg aagaaacgga atctgaaccc ggtcttcaac
     1081 gagactctct ggtactctgt cccgcaggcc gagctccggg gacgcgtgct gagcctgtcc
     1141 gtgtggcacc gcgaaagcct gggtcgcaac atctttctgg gcgaagtcga agtgcccctg
     1201 gacacgtggg actgggactc cgaacccacc tggctccccc tgcagccccg ggtcccgccc
     1261 tctcccgacg accttcccag ccgcggactg ctctctctgt ccctcaagta cgtgcccgct
     1321 ggctctgagg gcgcaggact gccctcgagt ggggagctgc acttctgggt gaaggaagct
     1381 caggacctcg tgcctctgcg cccaggatcc ctggatacct acatacaatg tttggtgctg
     1441 cctgatgaca gccaggccag ccgccaacgg acaagggtgg tgcgacgcag cctcagcccc
     1501 acgttcaatc acaccatggt ttatgatggc ttcggtcctg ctgacctgcg ccaggcctgt
     1561 gctgagctct ctctctggga ccatgggccc ctggccagtc gccagctggg gggcacacgc
     1621 ctcagcctgg gcaccggcag cagctatggg ctccaggtgc cctggatgga ctccacacct
     1681 gaggagaggc agctgtggca gacccttctg gagcggccat gtgagtgggt gcatggcctt
     1741 ctgcccctca gaaccaacct ggcccccagg acatagctgc cctacaagcc ctacaaaacc
     1801 cctctttctg gacccccatc tcacggcctg cccttggcta aagtcaataa agtctattct
     1861 gagggcaa
//
LOCUS       XM_032613148            1909 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin like 1 (SYTL1), transcript
            variant X2, mRNA.
ACCESSION   XM_032613148
VERSION     XM_032613148.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1909
                     /gene="SYTL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743940"
     CDS             123..1817
                     /gene="SYTL1"
                     /codon_start=1
                     /product="synaptotagmin-like protein 1 isoform X1"
                     /protein_id="XP_032469039.1"
                     /db_xref="GeneID:116743940"
                     /translation="MPQRGHPSQKGLWSLPGLLMAHEPQPEADGLLDLSFLTEEEQEA
                     IAKVLKRDACLRQLEEGRVSKLRTSLADPGQLKILTGDWFQEARFQRHHHAHLGSDLV
                     RASIRRRKGSRGDQAQGSDGEAQAAGKETEEALEPRLPMDEAPQERFSEAEGPDFPSP
                     YVPPKASDHEEEPQAQEAPGPGGVQAFAAEEADPELEPPSRGEEPQPPPAQTQEASEI
                     LENGEEAPGPDLSLDRVLSSSSSTPSLNSSTLSSSRTSLSGEAEAGAVQVRGSLYFAL
                     RYEPGNAQLRVHVIQCQGLAAARRRRSDPYVKSKLLPDKQSKRKTSVKKRNLNPVFNE
                     TLWYSVPQAELRGRVLSLSVWHRESLGRNIFLGEVEVPLDTWDWDSEPTWLPLQPRVP
                     PSPDDLPSRGLLSLSLKYVPAGSEGAGLPSSGELHFWVKEAQDLVPLRPGSLDTYIQC
                     LVLPDDSQASRQRTRVVRRSLSPTFNHTMVYDGFGPADLRQACAELSLWDHGPLASRQ
                     LGGTRLSLGTGSSYGLQVPWMDSTPEERQLWQTLLERPCEWVHGLLPLRTNLAPRT"
     misc_feature    225..>419
                     /gene="SYTL1"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    <453..>809
                     /gene="SYTL1"
                     /note="hypothetical protein; Provisional; Region:
                     PHA03169"
                     /db_xref="CDD:223003"
     misc_feature    927..1286
                     /gene="SYTL1"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
     misc_feature    1323..1793
                     /gene="SYTL1"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; Region: C2B_SLP_1-2-3-4;
                     cd04020"
                     /db_xref="CDD:175987"
ORIGIN      
        1 gcccctcggg gctgagcaaa tgttttcctt ccggagtcac catggtacct tagctgcttt
       61 gcagcactcg gcctccacca ccagggagcc atgtgtgccc agcctggccg ctgccccagc
      121 tgatgcccca gaggggccac ccatctcaaa aggggctctg gtccctgcct ggcctcctca
      181 tggcacatga gccacagcct gaggctgatg ggctattgga tctcagcttc ctgacagagg
      241 aggagcaaga ggctattgcc aaggtcctga agcgagatgc ctgcctgcgc cagctggagg
      301 agggacgggt cagcaagctc cggacatcgc tggcagaccc tgggcagctg aagatcctta
      361 caggcgactg gttccaggaa gcacgcttcc agcggcacca ccacgcccac cttggctctg
      421 accttgttcg tgcctccatc cgcaggagga agggctccag gggagaccag gctcagggca
      481 gcgatgggga agcacaggct gctgggaaag agaccgaaga ggcactggag cccaggctcc
      541 ccatggacga ggccccccaa gagaggttca gcgaggctga gggacctgat ttcccctcac
      601 catatgtccc cccaaaggct tcagatcatg aagaggagcc ccaggcccaa gaagcccctg
      661 gccccggggg cgttcaggcc ttcgccgcgg aggaggctga ccctgagctg gagcctccgt
      721 cgaggggaga ggagccgcag cccccgcctg cccagaccca ggaggcgtcc gagatcctgg
      781 agaatgggga ggaggccccg gggcccgacc tgtcactcga ccgcgtgctc agcagcagct
      841 cctccacgcc cagcctcaac tcctccacgc tgagcagcag ccgaacgagc ctgtccgggg
      901 aggcggaggc gggcgcggtg caggtgcgcg gctccctgta cttcgcgctg cgctacgagc
      961 ctggtaacgc ccagctgcgc gtgcacgtga tccagtgcca gggcctggcc gccgcccggc
     1021 gccgccgctc cgacccctac gtcaaaagca aactcctccc ggataagcag agcaagcgca
     1081 agacctcagt gaagaaacgg aatctgaacc cggtcttcaa cgagactctc tggtactctg
     1141 tcccgcaggc cgagctccgg ggacgcgtgc tgagcctgtc cgtgtggcac cgcgaaagcc
     1201 tgggtcgcaa catctttctg ggcgaagtcg aagtgcccct ggacacgtgg gactgggact
     1261 ccgaacccac ctggctcccc ctgcagcccc gggtcccgcc ctctcccgac gaccttccca
     1321 gccgcggact gctctctctg tccctcaagt acgtgcccgc tggctctgag ggcgcaggac
     1381 tgccctcgag tggggagctg cacttctggg tgaaggaagc tcaggacctc gtgcctctgc
     1441 gcccaggatc cctggatacc tacatacaat gtttggtgct gcctgatgac agccaggcca
     1501 gccgccaacg gacaagggtg gtgcgacgca gcctcagccc cacgttcaat cacaccatgg
     1561 tttatgatgg cttcggtcct gctgacctgc gccaggcctg tgctgagctc tctctctggg
     1621 accatgggcc cctggccagt cgccagctgg ggggcacacg cctcagcctg ggcaccggca
     1681 gcagctatgg gctccaggtg ccctggatgg actccacacc tgaggagagg cagctgtggc
     1741 agacccttct ggagcggcca tgtgagtggg tgcatggcct tctgcccctc agaaccaacc
     1801 tggcccccag gacatagctg ccctacaagc cctacaaaac ccctctttct ggacccccat
     1861 ctcacggcct gcccttggct aaagtcaata aagtctattc tgagggcaa
//
LOCUS       XM_032613156            1956 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin like 1 (SYTL1), transcript
            variant X3, mRNA.
ACCESSION   XM_032613156
VERSION     XM_032613156.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1956
                     /gene="SYTL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743940"
     CDS             170..1864
                     /gene="SYTL1"
                     /codon_start=1
                     /product="synaptotagmin-like protein 1 isoform X1"
                     /protein_id="XP_032469047.1"
                     /db_xref="GeneID:116743940"
                     /translation="MPQRGHPSQKGLWSLPGLLMAHEPQPEADGLLDLSFLTEEEQEA
                     IAKVLKRDACLRQLEEGRVSKLRTSLADPGQLKILTGDWFQEARFQRHHHAHLGSDLV
                     RASIRRRKGSRGDQAQGSDGEAQAAGKETEEALEPRLPMDEAPQERFSEAEGPDFPSP
                     YVPPKASDHEEEPQAQEAPGPGGVQAFAAEEADPELEPPSRGEEPQPPPAQTQEASEI
                     LENGEEAPGPDLSLDRVLSSSSSTPSLNSSTLSSSRTSLSGEAEAGAVQVRGSLYFAL
                     RYEPGNAQLRVHVIQCQGLAAARRRRSDPYVKSKLLPDKQSKRKTSVKKRNLNPVFNE
                     TLWYSVPQAELRGRVLSLSVWHRESLGRNIFLGEVEVPLDTWDWDSEPTWLPLQPRVP
                     PSPDDLPSRGLLSLSLKYVPAGSEGAGLPSSGELHFWVKEAQDLVPLRPGSLDTYIQC
                     LVLPDDSQASRQRTRVVRRSLSPTFNHTMVYDGFGPADLRQACAELSLWDHGPLASRQ
                     LGGTRLSLGTGSSYGLQVPWMDSTPEERQLWQTLLERPCEWVHGLLPLRTNLAPRT"
     misc_feature    272..>466
                     /gene="SYTL1"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    <500..>856
                     /gene="SYTL1"
                     /note="hypothetical protein; Provisional; Region:
                     PHA03169"
                     /db_xref="CDD:223003"
     misc_feature    974..1333
                     /gene="SYTL1"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
     misc_feature    1370..1840
                     /gene="SYTL1"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; Region: C2B_SLP_1-2-3-4;
                     cd04020"
                     /db_xref="CDD:175987"
ORIGIN      
        1 agccactccg ctgggccgcc ggttgagtca gccttaggcc ctcactgctc ttcttctggt
       61 ccctgaaact cagctgcagg ggagccgggg ttacccgacg aaggtgtccc ctccatactg
      121 gacccctaca gggagccatg tgtgcccagc ctggccgctg ccccagctga tgccccagag
      181 gggccaccca tctcaaaagg ggctctggtc cctgcctggc ctcctcatgg cacatgagcc
      241 acagcctgag gctgatgggc tattggatct cagcttcctg acagaggagg agcaagaggc
      301 tattgccaag gtcctgaagc gagatgcctg cctgcgccag ctggaggagg gacgggtcag
      361 caagctccgg acatcgctgg cagaccctgg gcagctgaag atccttacag gcgactggtt
      421 ccaggaagca cgcttccagc ggcaccacca cgcccacctt ggctctgacc ttgttcgtgc
      481 ctccatccgc aggaggaagg gctccagggg agaccaggct cagggcagcg atggggaagc
      541 acaggctgct gggaaagaga ccgaagaggc actggagccc aggctcccca tggacgaggc
      601 cccccaagag aggttcagcg aggctgaggg acctgatttc ccctcaccat atgtcccccc
      661 aaaggcttca gatcatgaag aggagcccca ggcccaagaa gcccctggcc ccgggggcgt
      721 tcaggccttc gccgcggagg aggctgaccc tgagctggag cctccgtcga ggggagagga
      781 gccgcagccc ccgcctgccc agacccagga ggcgtccgag atcctggaga atggggagga
      841 ggccccgggg cccgacctgt cactcgaccg cgtgctcagc agcagctcct ccacgcccag
      901 cctcaactcc tccacgctga gcagcagccg aacgagcctg tccggggagg cggaggcggg
      961 cgcggtgcag gtgcgcggct ccctgtactt cgcgctgcgc tacgagcctg gtaacgccca
     1021 gctgcgcgtg cacgtgatcc agtgccaggg cctggccgcc gcccggcgcc gccgctccga
     1081 cccctacgtc aaaagcaaac tcctcccgga taagcagagc aagcgcaaga cctcagtgaa
     1141 gaaacggaat ctgaacccgg tcttcaacga gactctctgg tactctgtcc cgcaggccga
     1201 gctccgggga cgcgtgctga gcctgtccgt gtggcaccgc gaaagcctgg gtcgcaacat
     1261 ctttctgggc gaagtcgaag tgcccctgga cacgtgggac tgggactccg aacccacctg
     1321 gctccccctg cagccccggg tcccgccctc tcccgacgac cttcccagcc gcggactgct
     1381 ctctctgtcc ctcaagtacg tgcccgctgg ctctgagggc gcaggactgc cctcgagtgg
     1441 ggagctgcac ttctgggtga aggaagctca ggacctcgtg cctctgcgcc caggatccct
     1501 ggatacctac atacaatgtt tggtgctgcc tgatgacagc caggccagcc gccaacggac
     1561 aagggtggtg cgacgcagcc tcagccccac gttcaatcac accatggttt atgatggctt
     1621 cggtcctgct gacctgcgcc aggcctgtgc tgagctctct ctctgggacc atgggcccct
     1681 ggccagtcgc cagctggggg gcacacgcct cagcctgggc accggcagca gctatgggct
     1741 ccaggtgccc tggatggact ccacacctga ggagaggcag ctgtggcaga cccttctgga
     1801 gcggccatgt gagtgggtgc atggccttct gcccctcaga accaacctgg cccccaggac
     1861 atagctgccc tacaagccct acaaaacccc tctttctgga cccccatctc acggcctgcc
     1921 cttggctaaa gtcaataaag tctattctga gggcaa
//
LOCUS       XM_032613166            1794 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus synaptotagmin like 1 (SYTL1), transcript
            variant X4, mRNA.
ACCESSION   XM_032613166
VERSION     XM_032613166.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1794
                     /gene="SYTL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743940"
     CDS             152..1702
                     /gene="SYTL1"
                     /codon_start=1
                     /product="synaptotagmin-like protein 1 isoform X2"
                     /protein_id="XP_032469057.1"
                     /db_xref="GeneID:116743940"
                     /translation="MPACASWRRDGSGKADKLRTSLADPGQLKILTGDWFQEARFQRH
                     HHAHLGSDLVRASIRRRKGSRGDQAQGSDGEAQAAGKETEEALEPRLPMDEAPQERFS
                     EAEGPDFPSPYVPPKASDHEEEPQAQEAPGPGGVQAFAAEEADPELEPPSRGEEPQPP
                     PAQTQEASEILENGEEAPGPDLSLDRVLSSSSSTPSLNSSTLSSSRTSLSGEAEAGAV
                     QVRGSLYFALRYEPGNAQLRVHVIQCQGLAAARRRRSDPYVKSKLLPDKQSKRKTSVK
                     KRNLNPVFNETLWYSVPQAELRGRVLSLSVWHRESLGRNIFLGEVEVPLDTWDWDSEP
                     TWLPLQPRVPPSPDDLPSRGLLSLSLKYVPAGSEGAGLPSSGELHFWVKEAQDLVPLR
                     PGSLDTYIQCLVLPDDSQASRQRTRVVRRSLSPTFNHTMVYDGFGPADLRQACAELSL
                     WDHGPLASRQLGGTRLSLGTGSSYGLQVPWMDSTPEERQLWQTLLERPCEWVHGLLPL
                     RTNLAPRT"
     misc_feature    <338..>694
                     /gene="SYTL1"
                     /note="hypothetical protein; Provisional; Region:
                     PHA03169"
                     /db_xref="CDD:223003"
     misc_feature    812..1171
                     /gene="SYTL1"
                     /note="C2 domain; Region: C2; cl14603"
                     /db_xref="CDD:472691"
     misc_feature    1208..1678
                     /gene="SYTL1"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; Region: C2B_SLP_1-2-3-4;
                     cd04020"
                     /db_xref="CDD:175987"
ORIGIN      
        1 ccccagaggg gccacccatc tcaaaagggg ctctggtccc tgcctggcct cctcatggca
       61 catgagccac agcctgaggc tgatgggcta ttggatctca gcttcctgac agaggaggag
      121 caagaggcta ttgccaaggt cctgaagcga gatgcctgcc tgcgccagct ggaggaggga
      181 cgggtcaggt aaggcagaca agctccggac atcgctggca gaccctgggc agctgaagat
      241 ccttacaggc gactggttcc aggaagcacg cttccagcgg caccaccacg cccaccttgg
      301 ctctgacctt gttcgtgcct ccatccgcag gaggaagggc tccaggggag accaggctca
      361 gggcagcgat ggggaagcac aggctgctgg gaaagagacc gaagaggcac tggagcccag
      421 gctccccatg gacgaggccc cccaagagag gttcagcgag gctgagggac ctgatttccc
      481 ctcaccatat gtccccccaa aggcttcaga tcatgaagag gagccccagg cccaagaagc
      541 ccctggcccc gggggcgttc aggccttcgc cgcggaggag gctgaccctg agctggagcc
      601 tccgtcgagg ggagaggagc cgcagccccc gcctgcccag acccaggagg cgtccgagat
      661 cctggagaat ggggaggagg ccccggggcc cgacctgtca ctcgaccgcg tgctcagcag
      721 cagctcctcc acgcccagcc tcaactcctc cacgctgagc agcagccgaa cgagcctgtc
      781 cggggaggcg gaggcgggcg cggtgcaggt gcgcggctcc ctgtacttcg cgctgcgcta
      841 cgagcctggt aacgcccagc tgcgcgtgca cgtgatccag tgccagggcc tggccgccgc
      901 ccggcgccgc cgctccgacc cctacgtcaa aagcaaactc ctcccggata agcagagcaa
      961 gcgcaagacc tcagtgaaga aacggaatct gaacccggtc ttcaacgaga ctctctggta
     1021 ctctgtcccg caggccgagc tccggggacg cgtgctgagc ctgtccgtgt ggcaccgcga
     1081 aagcctgggt cgcaacatct ttctgggcga agtcgaagtg cccctggaca cgtgggactg
     1141 ggactccgaa cccacctggc tccccctgca gccccgggtc ccgccctctc ccgacgacct
     1201 tcccagccgc ggactgctct ctctgtccct caagtacgtg cccgctggct ctgagggcgc
     1261 aggactgccc tcgagtgggg agctgcactt ctgggtgaag gaagctcagg acctcgtgcc
     1321 tctgcgccca ggatccctgg atacctacat acaatgtttg gtgctgcctg atgacagcca
     1381 ggccagccgc caacggacaa gggtggtgcg acgcagcctc agccccacgt tcaatcacac
     1441 catggtttat gatggcttcg gtcctgctga cctgcgccag gcctgtgctg agctctctct
     1501 ctgggaccat gggcccctgg ccagtcgcca gctggggggc acacgcctca gcctgggcac
     1561 cggcagcagc tatgggctcc aggtgccctg gatggactcc acacctgagg agaggcagct
     1621 gtggcagacc cttctggagc ggccatgtga gtgggtgcat ggccttctgc ccctcagaac
     1681 caacctggcc cccaggacat agctgcccta caagccctac aaaacccctc tttctggacc
     1741 cccatctcac ggcctgccct tggctaaagt caataaagtc tattctgagg gcaa
//
LOCUS       XM_032613179            2116 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fibronectin type III domain containing 10
            (FNDC10), mRNA.
ACCESSION   XM_032613179
VERSION     XM_032613179.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2116
                     /gene="FNDC10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743953"
     CDS             10..717
                     /gene="FNDC10"
                     /codon_start=1
                     /product="fibronectin type III domain-containing protein
                     10"
                     /protein_id="XP_032469070.1"
                     /db_xref="GeneID:116743953"
                     /translation="MRAPLLLLLLLLLLAACAPPPCAAAAPTPPGWEPSADAPWCPYK
                     VLPEGPEAGGGRLCFRSPARGFRCQAPACAAHASAGRALRASVLRNRSVLLQWRLAPA
                     EARRVRAFALNCSWRGAYTRFPCERVLLGASCRDYLLPDVHDGVRYRLCLQSLPLRAE
                     PPVAPEPAVVPEPAASAECVEFAAEPAGMREIVVAMTAVGGSICVMLVVICLLVAYIT
                     ENLMHPAFGRPGLRRQP"
     misc_feature    100..714
                     /gene="FNDC10"
                     /note="Family of unknown function (DUF5579); Region:
                     DUF5579; pfam17742"
                     /db_xref="CDD:375307"
ORIGIN      
        1 agccgcagga tgcgcgctcc gctgctgctg ctgctgctgc tgctgctgct ggccgcctgc
       61 gcgccgccgc cctgcgccgc ggccgccccg acgccgccgg gctgggagcc gtcggcagac
      121 gcgccctggt gcccctacaa ggtgctgccc gagggccccg aggcgggcgg cgggcgcctg
      181 tgcttccgca gcccggcgcg cggcttccgc tgccaggcgc ccgcctgcgc ggcgcacgcc
      241 tcggccggcc gcgcgctgcg cgccagcgtc ctgcgcaacc gcagcgtgct actgcagtgg
      301 cgcttggcgc cggccgaggc gcgccgcgtg cgcgccttcg cgctcaactg ctcgtggcgc
      361 ggcgcctaca cgcgcttccc gtgcgagcgc gtgctgctcg gcgcctcctg ccgcgactac
      421 ctgctgcccg acgtgcacga cggcgtgcgc taccgcctgt gcctgcagtc gctgccgctg
      481 cgcgccgagc cccccgtcgc cccggagccc gccgtcgtcc cggagcctgc cgcgtccgcc
      541 gagtgcgtgg agttcgccgc cgagccggcc ggcatgcggg agatcgttgt ggccatgacg
      601 gcggtgggcg gctccatctg cgtcatgctc gtggttatct gcctactcgt ggcctacatc
      661 acggagaacc tcatgcaccc ggccttcggg cgcccgggcc tgcgccggca gccctgaagt
      721 gcgaggcgcc cgccagaccg ggctctgcct gcccgactag ggtgcgggag gccccaggcc
      781 cttggcccgc tctcccctcc ccgctctcgc tccatcctga ggatctccac gcagggcctg
      841 ctggagatag atggggcacc ggccggccct tcccagggcc ttggagtcac cgcacgacct
      901 ttccagctga gcagccgcct cccaaactcc agctcgggac tggcccttgg gcctgagtgg
      961 agatgccagc cgcgtgcagg gctctccccg ctctccagag cccttggggg gtaccatcag
     1021 agcacagaga ccctcttcgc aagagccatt ggcacccccg ggccgtcacc ctgcgcctcc
     1081 agtctgtgac gagttggaaa aaaccaggct gtcgttatgg cttggtcact gtgtgctttt
     1141 cccactcaag ggggccgctt ggagcctgtc ctctccccgc cccaccccag tgggcttagg
     1201 tagcttcgtg ccttagtatc tcgggcccac tgcgggagcc agccaccctt ccagtgctgt
     1261 ccaagagggt ctgtggcccc gatgctggca gcttgcgcgt gcttctggcc agagcccccc
     1321 tggggaccct cccttcaagc tttgcaggaa catccagttt gggtaagaag cgtcctgcgg
     1381 tgtttccctg tgtgggcatt tgacaagttg ggagccgtga cttagctcgg caggcggccc
     1441 agcgtccagc tgttgtttcc gggggtgagt gtcccctgac ctcgggggga gctggcagtt
     1501 caccagggct gggctccctc cccttccttt tgtgtgtctg gtgaggactt tccatgggga
     1561 ctgggggtct gaaagagcag tgccgtatcc agagggtgaa ggatagatgc caacttgccc
     1621 agctggacct tccactgtga tctggatccc aagcctcaac cacggcatga cggacagcac
     1681 catgccaccc catccccgag ccagtggcca gctgccccgg atctggctgg gtgctgcccc
     1741 ctgcccacct acccgctcgc cgtggactga aggctggcct tgcccgtctc cgggcagacc
     1801 tgagcatctt ggccgaggtt ccctcctgtg ccagccacct gacgatgctg ggcgctggga
     1861 ggggcgaagc atggctcgcc cggctctgcg tgagcccccg actgtggctg tcctggaccc
     1921 ggcacatctg gagtcactgt ggcgaactcc ccctccccca gcagccacca gcgaccctca
     1981 caccagcagc ctggctggtg cccctgcagc gcccactccc tacctctctg tccttgctct
     2041 gcccgcccct ggtgtggcac tggtcaggcg tgagcctggc gccagtgtct aaatgtctat
     2101 cattcttaga cccaaa
//
LOCUS       XM_032613193           17044 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule actin crosslinking factor 1
            (MACF1), mRNA.
ACCESSION   XM_032613193
VERSION     XM_032613193.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 7 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-203               VOSU01000011.1     31903665-31903867
            204-265             VOSU01000011.1     31924819-31924880
            266-355             VOSU01000011.1     31937754-31937843
            356-433             VOSU01000011.1     31941730-31941807
            434-526             VOSU01000011.1     31946871-31946963
            527-693             VOSU01000011.1     31971689-31971855
            694-806             VOSU01000011.1     31972644-31972756
            807-913             VOSU01000011.1     31972858-31972964
            914-1033            VOSU01000011.1     31973385-31973504
            1034-1129           VOSU01000011.1     31973650-31973745
            1130-1257           VOSU01000011.1     31974728-31974855
            1258-1351           VOSU01000011.1     31974938-31975031
            1352-1506           VOSU01000011.1     31975229-31975383
            1507-1783           VOSU01000011.1     31976067-31976343
            1784-1912           VOSU01000011.1     31977318-31977446
            1913-1990           VOSU01000011.1     31978160-31978237
            1991-2152           VOSU01000011.1     31978959-31979120
            2153-2257           VOSU01000011.1     31980477-31980581
            2258-2353           VOSU01000011.1     31981358-31981453
            2354-2479           VOSU01000011.1     31982917-31983042
            2480-2632           VOSU01000011.1     31985511-31985663
            2633-2787           VOSU01000011.1     31987128-31987282
            2788-2914           VOSU01000011.1     31990745-31990871
            2915-3098           VOSU01000011.1     31991270-31991453
            3099-3268           VOSU01000011.1     31991867-31992036
            3269-3447           VOSU01000011.1     31997851-31998029
            3448-3586           VOSU01000011.1     31999339-31999477
            3587-3780           VOSU01000011.1     32000143-32000336
            3781-3943           VOSU01000011.1     32001577-32001739
            3944-4027           VOSU01000011.1     32002552-32002635
            4028-4135           VOSU01000011.1     32005527-32005634
            4136-4234           VOSU01000011.1     32005824-32005922
            4235-4387           VOSU01000011.1     32007791-32007943
            4388-4476           VOSU01000011.1     32008250-32008338
            4477-4612           VOSU01000011.1     32011254-32011389
            4613-4762           VOSU01000011.1     32028290-32028439
            4763-4996           VOSU01000011.1     32029362-32029595
            4997-5200           VOSU01000011.1     32030687-32030890
            5201-5719           VOSU01000011.1     32033131-32033649
            5720-5896           VOSU01000011.1     32034437-32034613
            5897-6020           VOSU01000011.1     32034868-32034991
            6021-6229           VOSU01000011.1     32035795-32036003
            6230-6547           VOSU01000011.1     32036384-32036701
            6548-6714           VOSU01000011.1     32047459-32047625
            6715-6871           VOSU01000011.1     32048872-32049028
            6872-6989           VOSU01000011.1     32050926-32051043
            6990-7052           VOSU01000011.1     32054536-32054598
            7053-7294           VOSU01000011.1     32055255-32055496
            7295-7424           VOSU01000011.1     32056319-32056448
            7425-7462           VOSU01000011.1     32057164-32057201
            7463-7463           "N"                1-1
            7464-7624           VOSU01000011.1     32057202-32057362
            7625-7741           VOSU01000011.1     32060243-32060359
            7742-8120           VOSU01000011.1     32060361-32060739
            8121-8176           VOSU01000011.1     32061420-32061475
            8177-8227           VOSU01000011.1     32061477-32061527
            8228-8311           VOSU01000011.1     32061529-32061612
            8312-8785           VOSU01000011.1     32061614-32062087
            8786-8786           "N"                1-1
            8787-8821           VOSU01000011.1     32062088-32062122
            8822-8822           "N"                1-1
            8823-9592           VOSU01000011.1     32062123-32062892
            9593-9754           VOSU01000011.1     32090814-32090975
            9755-9925           VOSU01000011.1     32091149-32091319
            9926-10092          VOSU01000011.1     32091954-32092120
            10093-10252         VOSU01000011.1     32095381-32095540
            10253-10579         VOSU01000011.1     32095886-32096212
            10580-10664         VOSU01000011.1     32097153-32097237
            10665-10906         VOSU01000011.1     32097740-32097981
            10907-11113         VOSU01000011.1     32098995-32099201
            11114-11233         VOSU01000011.1     32100572-32100691
            11234-11341         VOSU01000011.1     32101133-32101240
            11342-11560         VOSU01000011.1     32102183-32102401
            11561-11764         VOSU01000011.1     32103590-32103793
            11765-11773         VOSU01000011.1     32104508-32104516
            11774-12005         VOSU01000011.1     32105449-32105680
            12006-12232         VOSU01000011.1     32106298-32106524
            12233-12355         VOSU01000011.1     32107614-32107736
            12356-12457         VOSU01000011.1     32107834-32107935
            12458-12559         VOSU01000011.1     32108755-32108856
            12560-12733         VOSU01000011.1     32108950-32109123
            12734-12889         VOSU01000011.1     32109216-32109371
            12890-13087         VOSU01000011.1     32109535-32109732
            13088-13216         VOSU01000011.1     32110286-32110414
            13217-13390         VOSU01000011.1     32111218-32111391
            13391-13546         VOSU01000011.1     32113810-32113965
            13547-13753         VOSU01000011.1     32114070-32114276
            13754-13873         VOSU01000011.1     32114415-32114534
            13874-14043         VOSU01000011.1     32114952-32115121
            14044-14203         VOSU01000011.1     32116127-32116286
            14204-14398         VOSU01000011.1     32117362-32117556
            14399-14527         VOSU01000011.1     32117885-32118013
            14528-14671         VOSU01000011.1     32119191-32119334
            14672-14860         VOSU01000011.1     32119800-32119988
            14861-14981         VOSU01000011.1     32122489-32122609
            14982-15145         VOSU01000011.1     32123165-32123328
            15146-15308         VOSU01000011.1     32124720-32124882
            15309-15463         VOSU01000011.1     32126898-32127052
            15464-15538         VOSU01000011.1     32127941-32128015
            15539-15656         VOSU01000011.1     32132031-32132148
            15657-15868         VOSU01000011.1     32138946-32139157
            15869-15998         VOSU01000011.1     32142309-32142438
            15999-17044         VOSU01000011.1     32143583-32144628
FEATURES             Location/Qualifiers
     source          1..17044
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..17044
                     /gene="MACF1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     deleted 4 bases in 4 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 42 long SRA reads, 8 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743959"
     CDS             95..16255
                     /gene="MACF1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     deleted 4 bases in 4 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: microtubule-actin
                     cross-linking factor 1"
                     /protein_id="XP_032469084.1"
                     /db_xref="GeneID:116743959"
                     /translation="MPLLDSSYLPPTIFILTHILGIAGVLYWKRCARGRADERDRVQK
                     KTFTKWVNKHLMKVRKHINDLYEDLRDGHNLISLLEVLSGIKLPREKGRMRFHRLQNV
                     QIALDFLKQRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIYISGESGDMSAK
                     EKLLLWTQKVTAGYTGVKCTNFSSCWSDGKMFNALIHRYRPDLVDMERVQIQSNRENL
                     EQAFEVAERLGVTRLLDAEDVDVPSPDEKSVITYVSSIYDAFPKVPEGGEGISATEVD
                     ARWQEYQSRVDSLIPWIKQHTILMSDKSFPQNPVELKALYNQYIHFKETEILAKEREK
                     GRIEELYKLLEVWIEFGRIKLPQGYHPNDVEEEWGKLIIEMLEREKSLRPAVERLELL
                     LQIANKIQNGALNCEEKLTLAKNTLQADAAHLESGQPVQCESDVIMYIQECEGLIRQL
                     QVDLQILRDENYYQLEELAFRVMRLQDELVTLRLECTNLYRKGHFTSLELVPPSTLTT
                     THLKAEPLTRGTHSSSTSWFRKPMTRAELVSISSSEDEGNLRFVYELLSWVEEMQMKL
                     ERAEWGNDLPSVELQLEAQQHIHASVEELGSSVKEARLYEGKMSQNFHTSYVETLGKL
                     ETQYCKLKETSSFRMRHLQSLHKFVSRATAELIWLNEKEEEELAYDWSDNNPSISAKK
                     NYFSELTMELEEKQDVFRSLQDTAELLSLENHPAKQTVEAYSAAVQSQLQWMKQLCLC
                     VEQHVKENTAYFQFFSDARDLESFLRNLQESIKRKYSCDHSTSLSRLEDLLQDSMDEK
                     EQLIQSKSSVASLVGRSKSIVQLKPRSPDHVLKSTISIKAICDYRQIEITICKNDECV
                     LEDNSQRTKWKVISPTGNEAMVPSVCFLIPPPNKDAIEMASRVEQSYQKVMALWHQLH
                     VNTKSLISWNYLRKDLDLVKTWNLEKLRSSAPGEYHQVMKNLQSHYEDFLQESRDSAL
                     FSVADRLRLEEEVEACKTHFQHLMKSMENEDKEETVAKMYISELKNIRLRLEDCEQRL
                     IKRIQSPASSRTDRDARQDSALRIAEQEHTQEDLQLLRSDLDAVSTKCSSFLHQSPSG
                     SSVPTLRSELSLLVEKMEHVYGLSTVYLNKLKTISVIVRSIQDAELLVKGYEIKLSQE
                     EAVPADLSALESHRSTLQHWLSDAKDKNSVFSVLDEEIANAKVVAEQLSRLTPERNLD
                     LERYQEKGSQLQERWHRVIAQLDTRQSELESIQEVLGDYRACHGTLIKWIEETTAQQE
                     MMKPGQAEDSRVLSEQLSQQTELFAEIERNQTKLDQCQKFSQQYSTIVKDYELQLMTY
                     KAFVESQQKSPGKRRRMPSSSDAITQEFMDLRTRYTALVTLTTQHVKYISDALRRLEE
                     EEKVVEEEKQEHVEKVKELLGWMSTLAKNTQSKATSSQTKESTDIEKAILEQQVLAEE
                     LTTKREQVSEAIKTSQIFLAKHGHKLSEKEKEQISEQLNALNKAYHDLCDGSANQLQQ
                     LQSQLAQQTEQKTLQKQQNTCHQKLEDLCNWVGQAERALAGHQGRATQQDLSALQKNQ
                     SDLKDLQGDIQNHATSFASVVKDTEGFLEENHAKLSRHELTALREKLHQAKEQYEALQ
                     ERTKLAQKELEEVVTSALQQETEKSKAAKELEENRSKIDALLDWLTSVGSLGGQMEPV
                     SGGNLEKGALDTTDGHMGVNQAPETLDKQCEKLKARHQELLSQQQNFILATQSAQAFL
                     DQHGHNLTPEEQQMLQEKLGELKEQYVTSLARSEAEVKQVQTLRDELQKFLQDHREFE
                     NWLERSEKELENMHKRDSSPEALPALLKRQGSFSEDVISHKGDLRFVTISGRKVLDTE
                     NSLEEGKEPSATGTLVKDKLKDATERYSALHSKCTRLGAHLNLLLGQYQQFQSSAESL
                     QAWMKACEANVEKLLSETVASDPGVLQQQLVTTKQLQEELAEHQVPVEKLQKVAHDLM
                     EIEGEPAPDHKHVQETTDSILSHFQSLSSSLAERSALLQKAIAQSQSVQESLDSLLQS
                     ISEVENNLEEEKVAPLSSGVIQEALATNMKLKQDIARQKSSLEATREMVTRFMKTADS
                     NSAAVLQGKLAEVSQRFEQLRLQQQEKESSLKKLLPQAEMFEHLSDKLQRFMENKSRL
                     LASGNQPDQDIAHFFQQIQELNLEMEDQQENLDTLEYLVTDLSSCGFALDLSQHQDRV
                     QNLKKDFTELQKTVKEREEDASSCQQQLDEFRKLVRTFQKWLKETEGSIPPTETFTST
                     KELEKQIEHLKGLLDDWTSKGTLVEEINCKGTSLENLIMEITAPDSQAKTGSILPSVG
                     SSVGSVNGYHTCKDLTEIQCDMSDVNLKYEKLGEVLRERRESLQAVLSRMQEVQQEAG
                     LVLQWLELKEEVLKGMEASSSPTKTETVRAQAESNKAFLAELEQNSPKVQNVKEALSG
                     LLMTYPNSQEAENWKKMQEELNSRWEMATEVTMAXQRQLEESASHLACFQAAESQLRP
                     WLMEKELMMGVLGPLSIDPNMLNAQKQQVQFMLKEFEARRQQHEQLNEAAQGILTGPG
                     DVSPSTSQVQKELQSINQKWIELTDKLNSRSSQIDQAVVKSTQYQELLQDLSEKVKAV
                     RLRLSGQSAISTQPEAVKQQLEETSEIRSDVEQLDHKIKEAQTLCDELSVLIGEQYLK
                     DELKKRLETVALPLQGLEDLAADRMNRLQAALASTQQFQQMFDELRTWLDDKQSQQAK
                     NRPISAKLERLQSQLQENEEFQKNLNQHSGSYEVIVAEGESLLLSVPPGEEKKTLQNQ
                     LFELKSHWEELSKKTADRQSRLKDCLQKAQKYQWHVEDLVPWIEDCKVKMSDLRVTLD
                     PVQLESSLLRSKAMLSEVEKRRSLLEILNSAADILINSSETDEDDIRDEKAGINQNMD
                     SITEELQAKTGXLEEMTQRLKEFXESFKNIEKKVEGAKHQLEIFDALGSQACSNKNLE
                     KLRAQQEVLQTLEPQVDYLRNFTRGLVEDAPDGSDASQLLHQAEVTQQEFLEVKQRVN
                     SGCVAMESKLEGIGQFHCRVREMFSQLADLDDELDGMGAIGRDTDSLQSQIEDVRLFL
                     NRIQALKFDIEDSEAECRQMLEEEGTLDLLGLKRELEALSKQCGKLMERSKARQEQLE
                     LTLGRVEDFYRKLKALNDMTTAAEEGEALQWVVGTEVDVINQQLADFKMFQKEQVDPL
                     QLKLQQVNGLGQGLIQSAGKNCDVQGLEHDMEEINTRWNTLNKKVAQRIAQLQEALLH
                     CGKFQDALEPLLSWLADTEELIANQKPPSAEYKVVKAQIQEQKLLQRLLDDRKATVDM
                     LQAEGGRIAQAAERADREKITGQLESLESRWTGLLSKAAARQKQLEDILVLAKQFHET
                     AEPISDFLSVTEKKLANSEPVGTQAAKVQQQIVRHKALEEEIESHATDVHQAVKIGQS
                     LSSLTCSAEQGVLSEKLDSLQARFSEIQDRCCRKAALLEQALSNARLFGEDEVEVLNW
                     LAEVEDKLSSVFVKDYRQDVLQKQHADHLALNEEIVNRKKNVDQAIKNGQALLKQTTG
                     EEVLLIQEKLDGIKTRYADITLTSSKALRTLEQARQLAAKFQSTYEELTWWLRGVEEE
                     LAASGGQSPTGEQIPQFQQRQKELKKEVMEHRLVLDTVNEVSRALLELVPWRAREGLD
                     KLVSDANEQYKLVSDTVGQRVDEIDAAIQRSQQYEQAADAELAWVAETKRKLLALGPI
                     RLEQDQTTAQLQVQKAFSIDIIRHKDSMDELFSHRGEIFGTCGEEQKAMLQEKTESLI
                     QQYEAISLLNSERYARLERAQVLVNQFWETYEELSPWIEETRTLIAQLPPPAIDHEQL
                     RQQQEEMRQLRESIAEHKPHIDKLLKIGPQLKELNPEEGEMVQEKYQKAENMYAQIKE
                     EVRQRALALDEAISQSAQITEFHDKIEPMLETLENLSSRLRMPPLIPAEVDKIRECIS
                     DNKSATVELEKLQPSFEALKRRGEELIGRSQGADKDLAAKEIQDKLDQMVFFWEDIKA
                     RAEEREIKFLDVLELAEKFWYDMAALLTTIKDTQDIVHDLESPGIDPSIIKQQVEAAE
                     TIKEETDGLHEELEFIRILGADLIFACGETEKPEVKKSIDEMNNAWENLNKTWRERLE
                     KLEDAMQAAVQYQDTLQAMFDWLDNTVIKLCTMPPVGTDLNTVKDQLNEMKEFKVEVY
                     QQQIEMEKLNHQGELMLKKATDETDRDIIREPMTELKHLWENLGEKIAHRQHKLEGAL
                     LALGQFQHALEELMSWLTHTEELLDAQRPISGDPKVIEVELAKHHVLKNDVLAHQATV
                     ETVNKAGNELLESSAGDDASSLRSRLETMNQCWESVLQKTEEREQQLQSTLQQAQGFH
                     SEIEDFLLELTRMETQLSASKPTGGLPETAREQLDTHMELYSQLKAKEETYNQLLDKG
                     RLMLLSRDDSGSGSKTEQSVALLEQKWHVVSSKMEERKSKLEEALNLATEFQNSLQEF
                     INWLTLAEQSLNIASPPSLILNTVLSQIEEHKMFANEVNAHRDQIIELDQTGNQLKFL
                     SQKQDVVLIKNLLVSVQSRWEKVVQRSIERGRLLDDARKRAKQFHEAWKKLIDWLEGA
                     ESHLDSELEISNDPDKIKLQLSKHKEFQKTLGGKQPVYDTTIRTGRALKEKTLLPDDT
                     QKLDNLLGEVRDKWDTVCGKSVERQHKLEEALLFSGQFMDALQALVDWLYKVEPQLAE
                     DQPVHGDLDLVMNLMDAHKVFQKELGKRTGTVQVLKRSGRELIENSRDDTTWVKGQLQ
                     ELSTRWDTVCKLSVCKQSRLEQALKQAEEFRDTIHMLLEWLSEAEQTLRFRGALPDDT
                     EALRSLIDTHKEFMKKVEEKRVDVNTAVAMGEVILVVCHPDCITTIKHWITIIRARFE
                     EVLTWAKQHQQRLEAALSELVANAELLEELLAWIQWAETTLIQRDQEPIPQNIDRVKA
                     LIAEHQTFMEEMTRKQPDVDRVTKTYKRKIIEPAHAPFMEKSRGGSRKSLSQPTPPPM
                     PILSQSEAKNPRINQLSARWQQVWLLALERQRKLNDALDRLEELKEFANFDFDVWRKK
                     YMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDGILASKFPTTKLEMTAVADIFDRD
                     GDGYIDYYEFVAALHPNKDAYRPTTDADKIEDEVTRQVAQCKCAKRFQVEQIGENKYR
                     FGDSQQLRLVRILRSTVMVRVGGGWMALDEFLVKNDPCRARGRTNIELREKFILPEGA
                     SQGMTPFRSRGRRSKPSSRAASPTRSSSSASQSNHSCTSMPSSPATPASGTKIIPSTG
                     SKLKRPTPTFHSSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRAGSRAGSRA
                     SSRRGSDASDFDLLETQSACSDTSESSAAGGQGSSRRGLNKPSKIPTMSKKTTTASPR
                     TPGPKR"
     misc_feature    212..526
                     /gene="MACF1"
                     /note="first calponin homology (CH) domain found in the
                     plectin/dystonin/MACF1 family; Region: CH_PLEC-like_rpt1;
                     cd21188"
                     /db_xref="CDD:409037"
     misc_feature    order(221..223,233..235,383..385,389..394,401..406,
                     410..412,437..463,476..478,482..487,491..496,503..508,
                     515..517)
                     /gene="MACF1"
                     /note="putative actin binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:409037"
     misc_feature    557..877
                     /gene="MACF1"
                     /note="second calponin homology (CH) domain found in
                     microtubule-actin cross-linking factor 1, isoforms 1/2/3/5
                     (MACF1) and similar proteins; Region: CH_MACF1_rpt2;
                     cd21240"
                     /db_xref="CDD:409089"
     misc_feature    order(569..571,581..583,731..733,737..742,749..754,
                     758..760,782..808,827..829,833..838,842..847,854..859,
                     866..868)
                     /gene="MACF1"
                     /note="putative actin binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:409089"
     misc_feature    1739..2023
                     /gene="MACF1"
                     /note="Spectrin repeats; Region: SPEC; smart00150"
                     /db_xref="CDD:197544"
     misc_feature    2027..2596
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2336..2353
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2552..2752
                     /gene="MACF1"
                     /note="SH3 domain; Region: SH3_10; pfam17902"
                     /db_xref="CDD:407754"
     misc_feature    2855..3088
                     /gene="MACF1"
                     /note="Spectrin like domain; Region: Spectrin_like;
                     pfam18373"
                     /db_xref="CDD:465730"
     misc_feature    2909..>5035
                     /gene="MACF1"
                     /note="Coiled-coil domain-containing protein 158; Region:
                     CCDC158; pfam15921"
                     /db_xref="CDD:464943"
     misc_feature    4268..4960
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4613..4630
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    4832..>6868
                     /gene="MACF1"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    5408..6094
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    order(5750..5755,5759..5770)
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    7163..7819
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    7484..7501
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    7535..8152
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    7817..7834
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    8162..8800
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    8477..8494
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    8807..9448
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cl02488"
                     /db_xref="CDD:413338"
     misc_feature    9137..9154
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    9461..10117
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    9785..9802
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    9803..10444
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    10112..10129
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    10451..11098
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    10766..10783
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    11108..11749
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    11420..11437
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    11438..12097
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    11744..11761
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    12101..12754
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    12419..12436
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    12761..13411
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    13076..13093
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    13424..14068
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    13733..13750
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    14081..14719
                     /gene="MACF1"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    14387..14404
                     /gene="MACF1"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    14747..15121
                     /gene="MACF1"
                     /note="Spectrin repeats; Region: SPEC; smart00150"
                     /db_xref="CDD:197544"
     misc_feature    15221..15409
                     /gene="MACF1"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     Region: EFh; cd00051"
                     /db_xref="CDD:238008"
     misc_feature    order(15248..15250,15254..15256,15260..15262,15281..15283,
                     15356..15358,15362..15364,15368..15370,15389..15391)
                     /gene="MACF1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238008"
     misc_feature    15446..15664
                     /gene="MACF1"
                     /note="Growth-Arrest-Specific Protein 2 Domain; Region:
                     GAS2; smart00243"
                     /db_xref="CDD:128539"
     misc_feature    <15821..>16246
                     /gene="MACF1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
ORIGIN      
        1 ggacagcagt aacctcagga gaaaggcatt tagagtctgc gctgagctgt gggcttgtgg
       61 ctaactcagg ggaggagaaa ggacgggcct ggaaatgcct ctcttagatt cgtcttattt
      121 gccaccaacc atctttattt tgacgcacat tcttggaatt gccggtgttc tatactggaa
      181 gagatgtgcc agaggcagag cagatgaacg ggaccgtgtg cagaagaaga cgttcaccaa
      241 gtgggtcaac aagcacctga tgaaggtccg gaagcacatc aatgatcttt atgaagatct
      301 gcgggatggc cataacctga tctctctgct ggaggtcctc tcaggcatca aactgccccg
      361 ggagaagggc aggatgcgtt ttcacaggct gcagaacgtg cagattgccc tggacttcct
      421 aaagcagcgg caggtgaaac tagtgaatat tcgcaacgat gacatcacag acggcaaccc
      481 caagctgacc ctgggcctga tctggaccat tattttgcac ttccagatct ctgacatcta
      541 cattagtgga gaatcagggg acatgtcagc taaggagaag ctgctcctgt ggacccagaa
      601 agtgacagct ggttacacag gagtcaaatg caccaacttt tcctcctgct ggagtgatgg
      661 gaagatgttc aatgcactta ttcaccgata cagacctgac ctggtagata tggagagggt
      721 acagatccag agtaaccgag agaacctgga acaggctttc gaagtagcag aaagactggg
      781 cgtcacccgg ttactggatg cagaagatgt ggatgtgcca tctccagatg aaaagtctgt
      841 aatcacttat gtgtcttcta tttatgatgc cttccctaaa gtccctgagg gtggagaagg
      901 catcagtgct acggaagtag acgccaggtg gcaagaatac caaagccgag tggactccct
      961 cattccctgg atcaaacagc atacaatact gatgtcagat aaatcttttc cccagaaccc
     1021 tgttgaacta aaggcacttt ataatcaata tatacacttc aaagaaacag aaattctggc
     1081 caaggagaga gaaaaaggaa gaattgagga attatataaa ttgttagagg tatggattga
     1141 atttggccga attaaactgc ctcaaggtta tcaccctaat gatgtggaag aagagtgggg
     1201 aaaactcatc attgagatgc tggagcgcga gaagtcactt cgaccagctg tagagaggct
     1261 ggaattgctg ctacagattg caaacaaaat acagaatggt gctttgaact gtgaagaaaa
     1321 actgacatta gctaagaata cactgcaggc tgacgctgct cacctggaat caggacaacc
     1381 agtgcagtgt gagtcagatg tcatcatgta cattcaggag tgtgaaggtc tcatcagaca
     1441 gctgcaggtg gatctccaga tcctaaggga tgagaattac taccagctag aagagctggc
     1501 ttttagggtc atgcgtttgc aggatgagct ggttaccttg cgtctagagt gcacaaactt
     1561 gtatcggaag ggccatttca cttcacttga attggttcca ccctctactt taaccactac
     1621 tcatctgaag gcagaaccct tgacaagagg aacccattct tcttctacct cctggttccg
     1681 aaagcccatg actcgggctg aacttgtgtc tatctcctcc tctgaagatg aaggcaacct
     1741 ccgatttgtg tatgaactac tgtcttgggt ggaagaaatg cagatgaaac tggaacgagc
     1801 agagtggggc aatgacctgc ctagtgtgga gttgcagctg gaagcacagc agcacatcca
     1861 cgccagtgtg gaagaactgg gctcaagtgt caaagaggcc aggctatatg agggaaaaat
     1921 gtcccaaaat tttcatacca gttatgttga aactcttgga aagctggaga cacagtattg
     1981 taaattgaag gaaacttcta gcttccggat gaggcacctt cagagcctgc ataaatttgt
     2041 ctccagagct acagctgagt tgatctggtt gaatgagaaa gaggaggagg aactagcata
     2101 tgattggagt gacaacaatc ccagtatctc agccaagaaa aattacttct ctgaattgac
     2161 aatggaactg gaggagaaac aggacgtgtt tcggtctcta caagatacag ctgagctgct
     2221 gtcacttgag aaccacccag ccaagcagac tgtggaggct tacagcgctg ctgtccagtc
     2281 ccagctgcag tggatgaagc agctgtgctt gtgtgtcgag cagcatgtga aagagaatac
     2341 tgcttacttt cagttcttca gtgacgctcg agacctggag tcattcctga ggaacctcca
     2401 agaatccatc aaacggaagt actcctgcga ccacagcacc agcttgtccc gcctggagga
     2461 cctgctgcag gactccatgg atgaaaagga gcagcttata cagtccaaga gttccgttgc
     2521 cagtcttgtt gggagatcaa aatccattgt tcagctaaag ccacgcagtc ccgaccacgt
     2581 gctaaagagc accatttcca tcaaggccat ctgtgactac cggcagatcg agatcactat
     2641 ttgcaagaat gatgagtgtg tgttggaaga taattcacag aggaccaagt ggaaagtgat
     2701 cagccccaca gggaatgagg caatggtacc atcagtctgc ttccttatcc ccccacccaa
     2761 taaggatgcc attgagatgg ccagcagggt ggagcagtct tatcagaagg tgatggccct
     2821 ttggcatcag ctacatgtta acaccaaaag ccttatctcc tggaactatc tgaggaagga
     2881 ccttgacctt gtaaagacct ggaacctaga aaagctccgc tcctcagcac ctggggagta
     2941 ccaccaggtt atgaagaacc tgcagtccca ctacgaagac tttcttcagg agagccgtga
     3001 ctcagcgctg ttttcagtgg ctgatcgtct gcgcttggaa gaggaggtgg aggcttgtaa
     3061 aacccacttc cagcacctga tgaagtccat ggagaatgag gacaaagagg aaactgtggc
     3121 taagatgtac atttcagagc tgaagaatat ccggctgcgc ctggaggact gtgaacagag
     3181 gctaatcaaa cgaattcaat cccctgccag ctctaggact gacagagatg cccggcagga
     3241 cagtgcatta aggatcgcag aacaagagca cacccaggag gatttgcagc tactgaggtc
     3301 agacttggat gctgtttcca cgaaatgcag cagctttctc catcagtccc catctggttc
     3361 gagtgtccca actctgcgct cagaactcag tctgctggtg gagaaaatgg agcatgtgta
     3421 tggtctctcc actgtctatt tgaacaagct aaagacaatc agtgttatag tgcgtagcat
     3481 ccaggatgct gaactcttag tcaaaggtta tgaaatcaag ctgagtcaag aagaagcagt
     3541 accagcagat ctctcagctc tggagtccca tcggtctacg ttacagcact ggctcagtga
     3601 tgcgaaggac aagaattcag tgttttcagt cctggatgag gaaattgcga acgccaaggt
     3661 ggtggcagag cagctgagtc gtctgacccc agagcgaaac ttggatttgg aacgctatca
     3721 ggagaagggc tcccagctgc aggagcgttg gcaccgggtc attgcccagc tcgacacccg
     3781 ccaatctgag ctagaaagta tccaggaagt tctgggagat taccgagcct gccatggaac
     3841 tctcatcaaa tggattgagg aaaccaccgc ccagcaggaa atgatgaagc caggccaggc
     3901 tgaggacagc agagtgctat ccgagcagct cagccagcag acggagctgt ttgcagaaat
     3961 cgagagaaat cagacaaaac tggaccagtg tcaaaaattt tcccagcaat actccactat
     4021 tgtaaaggac tatgaattgc aactgatgac atacaaggcc tttgtggaat cacagcaaaa
     4081 atccccgggc aagcgccgtc gcatgccttc ctcttcagat gccatcacgc aagagttcat
     4141 ggacttaagg actcgctaca cagcattggt gaccttaaca actcagcacg tgaaatacat
     4201 cagtgatgca ctccggcggc tggaggagga ggagaaagtg gtagaagaag aaaaacagga
     4261 acatgtggag aaggttaaag aacttttggg ctggatgtct accctagcaa agaatacaca
     4321 aagcaaagct acctcatccc agaccaaaga atcaacagac attgaaaaag ctattttaga
     4381 acagcaggtt ctggcagagg agctaacaac caagagggaa caagtctctg aggccattaa
     4441 aacttcacag atcttcttgg ccaagcatgg tcataagctc tcagaaaaag agaaggaaca
     4501 gatatctgag caattgaatg ccctgaataa ggcttaccat gacctttgtg atggttcagc
     4561 aaaccagctt cagcagcttc agagccagct ggcccagcag acagaacaaa agaccctgca
     4621 gaaacaacaa aatacctgtc accagaaact ggaggatctt tgcaactggg taggacaggc
     4681 agaaagagca ttggctggcc atcaaggtag agccacccag caggatctct ctgctttgca
     4741 gaagaaccaa agtgacttga aggatttaca gggtgacatt cagaatcatg ccacctcatt
     4801 tgccagtgtt gtcaaagaca ctgaagggtt cctggaagag aaccacgcta agctgagccg
     4861 ccatgagttg acagctctcc gggagaaact tcatcaggct aaggagcagt atgaggctct
     4921 ccaggaaagg acgaagctgg cccagaagga gctggaggaa gtggtgacct cagccttaca
     4981 gcaggagact gaaaagagta aagcagcaaa ggaactggaa gagaacagga gtaagatcga
     5041 tgctctcttg gattggctga cttcagtggg atcattgggt ggacagatgg agccggtctc
     5101 aggaggtaac ctggagaaag gagccttgga taccactgat ggtcacatgg gggtgaacca
     5161 agccccagag acgctggaca agcaatgtga gaagttgaag gctcgtcacc aagaattgct
     5221 gtcgcagcag caaaatttca tcctggccac ccagtctgct caggccttcc tggaccagca
     5281 tggccacaat ctcacacccg aggagcagca gatgctgcaa gaaaagctcg gagaactaaa
     5341 ggagcagtat gtgacttccc tggcccggtc agaggcagaa gtgaagcagg tgcagacact
     5401 acgggatgag ctgcagaagt ttctgcagga tcatcgagag tttgaaaact ggctggaacg
     5461 gtccgagaaa gagctggaga acatgcacaa gcgagacagc agccccgagg cccttcccgc
     5521 cctactcaag cgacagggga gcttctcgga ggacgtaatt tcccacaaag gagacttgag
     5581 atttgtgact atctcaggac ggaaagtctt ggacacagaa aacagccttg aggaaggcaa
     5641 agaaccatca gcaactggaa ccttagtgaa ggacaagctg aaggatgcaa cagaaagata
     5701 cagtgctctc cattcaaagt gtacacgact gggcgctcac ctgaacttgc tgctaggcca
     5761 gtatcagcag ttccagagca gtgccgaaag cctgcaggcc tggatgaaag cttgtgaggc
     5821 caacgtggag aagctcctct cagaaactgt tgcctctgac cctggggtcc tgcaacagca
     5881 gcttgtgacc acaaagcagt tgcaggagga attggctgag catcaagtac ctgtagaaaa
     5941 gctccaaaag gtagctcatg acctcatgga aattgaaggg gagccagccc cagaccacaa
     6001 gcatgttcag gaaactacag attccatact cagccatttc caaagcctct ccagtagctt
     6061 ggcagagcgc tctgctctgc tgcagaaagc cattgcccag tctcagagtg tccaggaaag
     6121 cctggacagc ttgttgcagt ccatcagtga agttgaaaat aacctggaag aggagaaggt
     6181 ggcaccgctg tcatcaggag tcatacagga ggccctggcc actaacatga aattgaagca
     6241 ggacattgct cggcagaaga gcagcttgga ggccacacgt gagatggtga cccgattcat
     6301 gaagacagca gacagcaact cggccgcagt gctgcagggc aaactggccg aggtgagcca
     6361 gcgcttcgaa cagctccggc tacagcagca agaaaaggag agctccctaa agaagcttct
     6421 gccccaggca gagatgtttg agcatctctc tgataagctg cagcgattca tggaaaacaa
     6481 aagtcggttg ctggcctctg ggaatcagcc agatcaagat attgcacatt tcttccaaca
     6541 gatccaggag ctcaatttgg aaatggaaga ccaacaggag aacctggaca ctcttgagta
     6601 cctggtcact gacctgagct cctgtggctt tgccctggac ctgtcccagc accaggacag
     6661 ggtacagaac ctcaaaaagg acttcacaga gctacagaag acagttaaag aaagagagga
     6721 agatgcatca tcttgccagc agcaattaga tgaattccgg aagctggtta ggactttcca
     6781 gaaatggctg aaggaaaccg aaggcagtat tccacctaca gagactttca cgagcactaa
     6841 agagctggaa aaacagattg aacacctgaa gggtctccta gatgactgga caagtaaggg
     6901 aacgttggta gaagaaatca attgcaaagg tacttcttta gaaaatctca tcatggagat
     6961 cacagcacct gattctcaag ccaagacagg ttccatactg ccctctgtag gaagctctgt
     7021 aggcagtgta aacggatacc acacctgcaa agatctgacg gagatccagt gtgacatgtc
     7081 agatgtaaac ctgaaatatg agaaacttgg ggaagtgctt cgggaacgcc gggaaagtct
     7141 tcaggctgtc ctcagccgaa tgcaggaagt tcagcaggag gcaggcttgg tgctgcagtg
     7201 gctggagtta aaagaggaag tcctgaaagg catggaggcc tcttcatctc caaccaagac
     7261 agagacagtg agagcccaag ctgaatctaa caaggccttc ctggctgaat tggaacagaa
     7321 ttctccaaaa gtccaaaatg taaaggaagc cctgtctgga ttattgatga cgtatcccaa
     7381 ctcacaagaa gcagaaaact ggaagaaaat gcaagaggag ctcaattccc gatgggaaat
     7441 ggccactgag gtgacaatgg ctncgcaaag gcagctggag gaatccgcaa gtcatctggc
     7501 ctgcttccag gctgcagaat cccagctccg gccctggcta atggagaaag agctgatgat
     7561 gggggtgctg gggcccctgt ctattgaccc caacatgctg aatgcacaga agcagcaggt
     7621 ccagtttatg ctgaaggaat ttgaagcacg caggcaacag catgagcagc tgaacgaggc
     7681 agctcagggc atcctaacag gccctggaga tgtctctcct tccaccagcc aagtacagaa
     7741 ggagctccag agcatcaatc agaagtggat tgagctgact gacaaactta attcccgttc
     7801 cagccaaatt gaccaagctg ttgtcaaaag cacccagtac caggaactgc tccaggactt
     7861 gtcagagaaa gtgaaggcag tcagactgcg actgagtggc cagtcagcca tcagcaccca
     7921 acctgaggct gtgaagcagc agttggagga gaccagtgag attcgatctg acgtggagca
     7981 gttggaccac aagattaagg aggcgcagac actctgcgat gaactttcag tgctcattgg
     8041 agagcagtac ctcaaggatg aactgaagaa gcgtttggag actgttgccc tgcctctcca
     8101 aggtttagag gaccttgcag ctgatcgcat gaacagactc caggcagctc ttgccagcac
     8161 ccagcagttc cagcaaatgt ttgatgagct gagaacctgg ttggatgaca aacaaagcca
     8221 gcaagcaaaa aaccgcccaa tttctgcaaa attagagcgg ctacagtctc agctacagga
     8281 gaatgaagag tttcagaaga accttaacca acacagtggt tcctatgagg tgatcgtggc
     8341 agaaggagaa tctctgcttc tttctgtacc tcctggagaa gagaagaaaa ctttacaaaa
     8401 ccagctcttt gagctcaaaa gccattggga agagcttagt aaaaaaactg cagacagaca
     8461 gtccaggctt aaggactgtc tgcagaaagc tcagaaatat cagtggcacg tagaagatct
     8521 cgtgccatgg atagaagatt gtaaggtcaa gatgtctgac ttgcgggtca ctctggatcc
     8581 agtgcagctg gagtccagtc tcctgagatc aaaggctatg ctgagtgagg tggaaaagcg
     8641 ccgctccctg ctagaaatcc tgaacagtgc tgctgacatt ctgatcaact cttcagaaac
     8701 agatgaggat gatatccggg atgagaaggc tgggatcaac cagaacatgg attccattac
     8761 agaagagcta caggccaaga cagggntcct tgaagaaatg actcagaggc tcaaggagtt
     8821 cnaggaaagc tttaagaata ttgaaaagaa agttgaaggg gccaaacacc aacttgagat
     8881 ctttgatgct cttggctctc aagcctgcag caacaagaac ctggagaagc taagagctca
     8941 acaggaagtg ctgcagaccc tggagccaca ggtggactat ctgaggaact tcactcgggg
     9001 cctggtagaa gatgccccgg acggatctga tgcttcccaa cttctgcatc aagctgaggt
     9061 cacccagcag gagttcctag aagtgaagca aagagtgaac agtggttgcg tggcaatgga
     9121 aagcaagctg gagggcattg gccagtttca ctgccgagtc cgagaaatgt tttctcagct
     9181 ggcagacctg gacgatgagc tcgatggcat gggtgctatc ggcagagaca ctgatagcct
     9241 ccagtcccag atcgaggatg tacggctgtt ccttaacaga atccaagccc tcaagttcga
     9301 catagaagac tctgaagcag agtgccgaca aatgctggag gaagaaggga ctctggactt
     9361 gttaggactc aagagggagc tagaagccct gagcaaacag tgtggcaaac tgatggagag
     9421 gagtaaagcc cggcaggagc agctggagct gaccctgggc cgggttgagg acttctatcg
     9481 gaagctgaaa gcactcaatg acatgaccac agcggcagag gagggggagg cgctccagtg
     9541 ggtagtgggg accgaggtgg atgtcatcaa ccaacaatta gcagatttta aaatgtttca
     9601 gaaagaacag gtggatcctc ttcagttgaa actacagcag gtgaatggac tcggccaggg
     9661 tttgatccag agtgccggaa aaaactgtga tgtgcagggt ttggaacatg acatggaaga
     9721 gatcaacact cggtggaaca cattgaataa aaaggttgca caaagaatcg cacaactcca
     9781 ggaggctttg ttgcattgtg ggaagttcca agatgccttg gagccgttgc tcagctggtt
     9841 ggcagacact gaggagctca tagccaatca gaaaccccca tctgctgagt ataaagtggt
     9901 gaaagcacag atccaagaac agaagttgct ccagcggctc ctagatgatc gaaaggccac
     9961 agtagacatg cttcaagcag aaggaggcag aatagcccag gcagctgagc gggctgatag
    10021 agagaagatc actgggcagt tggagagtct tgaaagtaga tggacaggac tactcagcaa
    10081 ggcagcagcc aggcaaaaac agctggaaga tatcctggtt ctggccaaac aattccatga
    10141 gacagctgag cctatttctg acttcttatc tgtcacggag aaaaagctcg ctaactcaga
    10201 gcctgttggc actcaggccg ccaaagtaca gcagcagata gttcgccaca aggctctgga
    10261 ggaagaaata gaaagccatg caacagatgt gcaccaggca gtcaaaattg ggcagtccct
    10321 ctcctccctg acatgttctg cagagcaggg tgtactgtct gaaaagctag actcattgca
    10381 ggcccgattc agtgagattc aagaccggtg ctgtcggaaa gcagccctgc ttgaacaagc
    10441 actgtctaac gctaggctgt tcggggagga tgaggtggag gtgctcaact ggctggctga
    10501 ggttgaggac aagctcagtt cagtgttcgt aaaggattac agacaggatg tcctgcagaa
    10561 gcagcatgct gaccacctgg ctttaaatga agaaattgtt aatagaaaga agaatgtaga
    10621 tcaagctatt aaaaatggcc aggctcttct aaaacaaacc acaggtgaag aggtattgct
    10681 tatccaagag aaactggatg gcataaagac tcgctatgca gacataacac tcactagctc
    10741 caaggccctc agaaccttag agcaagctcg gcagctggcc gccaagttcc agtccacgta
    10801 tgaggaactg acctggtggc tgaggggagt ggaggaggag ctggcagcca gtggagggca
    10861 gtctcccaca ggggagcaaa taccccagtt tcagcaaagg cagaaggagc taaagaagga
    10921 ggtcatggag cacaggctgg tgttggacac agtgaatgag gtgagccgtg ctctcttaga
    10981 gctggtgccc tggagagcca gagaagggct ggataaactt gtgtctgatg ccaatgagca
    11041 gtacaagctg gtcagtgaca ctgttggaca aagggtggat gaaatcgatg ctgctattca
    11101 gagatcacaa cagtatgagc aagctgctga tgcagagcta gcttgggttg ctgaaacaaa
    11161 acggaaactg ctggcgctgg gtccaatccg cttggaacag gaccagacca cagctcagct
    11221 gcaggtacag aaggctttct ccattgacat cattcgacac aaagattcca tggacgaact
    11281 attcagtcat cgtggtgaaa tctttggcac atgtggggag gagcaaaaag ctatgttaca
    11341 ggaaaagaca gagtctctaa tacaacagta tgaagccatt agtctgctca attcagagcg
    11401 ttacgcccgc ctagaacggg cacaggtctt ggtgaaccag ttttgggaaa catatgagga
    11461 gctcagcccc tggattgagg aaactcggac actaatagca cagttacctc ctccggctat
    11521 tgatcatgag cagctcaggc agcaacaaga ggaaatgagg caactaaggg aatccattgc
    11581 tgaacacaaa cctcatatcg ataagctgct aaagataggc cctcaactaa aggagttaaa
    11641 ccctgaagag ggggaaatgg tgcaagaaaa ataccagaaa gcagaaaata tgtatgccca
    11701 aattaaagag gaggtgcgcc agcgggccct ggctctggac gaggctattt cccagtcagc
    11761 tcagattaca gagttccatg ataaaattga gcccatgttg gagactctgg agaatctttc
    11821 ctctcgcctg cgtatgccac ccctgatccc tgctgaagta gacaagatca gagagtgcat
    11881 cagtgacaac aagagtgcca ctgtggagct ggaaaaactg cagccatcct ttgaggccct
    11941 gaagcgccgt ggagaagagc tcattgggcg atctcaggga gctgacaagg atctggctgc
    12001 aaaagaaatc caggacaaat tggatcaaat ggtattcttc tgggaggaca tcaaagctcg
    12061 ggctgaagag cgagaaatta aattccttga tgtccttgaa ctagcagaga agttctggta
    12121 tgacatggca gctctcctca ccaccatcaa agacacccag gacatcgtcc atgacttgga
    12181 aagccctggc attgacccat ccattatcaa acaacaggtt gaagccgccg agactattaa
    12241 ggaagagaca gatggtctgc atgaggaatt ggagtttatt cgaatccttg gagcagattt
    12301 gatttttgcc tgtggagaaa ctgagaagcc ggaagtgaag aagagcattg atgagatgaa
    12361 taatgcctgg gagaacttaa acaaaacatg gagagagaga ctggaaaagc ttgaggatgc
    12421 catgcaagcc gctgtgcagt atcaggacac tcttcaggct atgtttgact ggctagataa
    12481 cactgtgatt aaactctgca caatgccccc tgtcggcact gacctcaaca ctgttaaaga
    12541 tcagttaaat gaaatgaagg agttcaaagt ggaagtttac caacagcaaa ttgagatgga
    12601 gaagctcaat caccagggtg aactgatgtt aaagaaagct actgatgaaa cggacagaga
    12661 cattatacga gaaccaatga cggaacttaa acacctctgg gagaacctgg gtgagaaaat
    12721 tgctcacaga cagcataagc tggaaggtgc tctcttggcc cttggccagt tccagcatgc
    12781 cttagaggag ctaatgagtt ggttgactca cactgaagag ttgctagatg ctcagagacc
    12841 aataagtgga gacccaaaag tcattgaagt tgagctcgca aagcaccacg ttctaaaaaa
    12901 tgatgttctg gcccatcaag ccacagtgga aacagtcaac aaagctggca atgagcttct
    12961 tgaatctagc gctggagatg atgccagcag cttaaggagc cgtttagaaa ccatgaacca
    13021 gtgctgggag tcagtgttac aaaaaacaga ggagagggag cagcagcttc agtcgacgct
    13081 gcagcaggcg cagggtttcc atagtgaaat tgaagatttc ctcttggaac tgactagaat
    13141 ggagacccaa ctttctgcat caaagcccac aggaggactt cctgaaacgg ctagggagca
    13201 gcttgataca catatggaac tctattccca gctcaaagcc aaggaagaga cttacaatca
    13261 actgcttgac aagggcaggc tcatgcttct cagccgtgat gattctggat ctggctcaaa
    13321 gacagaacag agcgtagcac tcttggaaca gaagtggcat gtggtcagca gtaagatgga
    13381 agaaagaaag tcaaagctgg aagaggccct caacctggca acagaattcc agaattccct
    13441 gcaagaattt atcaactggc tcactctagc agagcagagt ttaaacatcg cttctcctcc
    13501 cagcctgatt ctaaacaccg tcctttccca gatagaggag cacaagatgt ttgctaatga
    13561 agtaaatgct catcgagacc agatcattga gctggatcaa accgggaatc agttaaagtt
    13621 ccttagccag aaacaggacg ttgttctgat caaaaatttg ctggttagcg tccagtctcg
    13681 atgggagaag gttgtccagc gatctattga aagaggacga ttgctggatg atgccagaaa
    13741 gcgggcaaaa caattccatg aagcttggaa aaaactgatt gactggctag aaggtgcaga
    13801 gagtcacctg gactcagaac tggagatatc caacgaccca gacaaaatta aacttcagct
    13861 ctcaaagcat aaggagttcc agaaaactct tggtggcaaa cagcctgtgt atgataccac
    13921 aattagaaca ggcagagcac tgaaagaaaa gactttgctt cctgatgata ctcagaaact
    13981 tgacaactta ctgggagaag tcagagacaa atgggatact gtttgtggca agtctgttga
    14041 gaggcagcac aagttggagg aggccctgct gttttcgggc cagttcatgg acgctctgca
    14101 ggccttggtg gactggttgt acaaggtaga gccgcagctg gctgaggacc agcctgtgca
    14161 cggggacctg gacctcgtca tgaacctcat ggatgcccac aaggttttcc agaaggaact
    14221 gggaaagcga acgggaaccg ttcaggtcct aaagcgatca ggccgggagc tgattgagaa
    14281 cagtcgagat gacaccactt gggtgaaagg gcagctccag gaactgagca ctcgctggga
    14341 caccgtgtgt aaactctctg tctgcaaaca gagccggctt gagcaggcct tgaagcaggc
    14401 agaagagttt cgggacacaa ttcacatgct gttggagtgg ctttctgaag cagagcagac
    14461 actgcgtttt cggggggcac ttcctgatga cacagaggcc ctgcggtctc tcatcgacac
    14521 tcataaggaa ttcatgaaga aagtggaaga aaagcgcgtg gatgttaaca cagcagtggc
    14581 catgggagaa gtcatcctgg tggtctgcca tcctgattgc atcaccacca tcaaacactg
    14641 gatcaccatc atccgggctc gctttgagga ggtcctgacg tgggccaagc agcaccagca
    14701 acgcctcgaa gccgccctgt cagaactggt ggccaacgcc gagctcttgg aagaacttct
    14761 ggcatggatc cagtgggccg agaccaccct cattcaacgg gatcaggagc ctatccctca
    14821 gaacatagac cgagttaaag cccttatcgc tgagcatcag acatttatgg aggagatgac
    14881 tcgcaaacag cctgacgtgg accgggtcac caagacgtac aaaaggaaga tcatagagcc
    14941 agcccatgcg cctttcatgg agaagtcccg cggtggcagc agaaagtctt tgagtcagcc
    15001 cacacctcct cccatgccaa tcctttcaca atctgaagca aaaaacccac ggatcaacca
    15061 gctctctgcc cgctggcagc aggtgtggct tctggcactg gagcggcagc ggaagctgaa
    15121 cgacgccttg gacaggctgg aggagttgaa ggaatttgcc aactttgact ttgatgtttg
    15181 gaggaaaaag tatatgcgtt ggatgaatca caaaaagtct cgggtgatgg atttcttccg
    15241 gcgaattgac aaggaccagg atgggaagat aacacgtcag gagtttatcg atggcattct
    15301 agcatccaag ttccctacta ccaagttaga gatgactgct gttgctgaca tttttgaccg
    15361 cgatggggat ggctacattg attactatga attcgtggct gctctccatc ccaacaagga
    15421 tgcttatcga ccaacaactg atgcagataa aattgaagat gaggtcacaa gacaagtggc
    15481 tcagtgtaaa tgtgcaaaaa ggtttcaggt ggagcagatt ggagagaata aataccggtt
    15541 tggggactcc cagcagctgc ggctggtccg catcctgcgc agcacggtga tggtccgcgt
    15601 tgggggagga tggatggccc tggatgaatt cctcgtgaaa aatgacccct gccgagcacg
    15661 aggtagaact aacatcgaac ttagagagaa attcatccta cctgaggggg catcccaggg
    15721 aatgacccct ttccgatcac ggggccgaag gtccaaacca tcttcccggg cagcctcccc
    15781 tacccgctcc agctcaagtg ctagtcagag taaccacagc tgtacgtcca tgccgtcttc
    15841 tccagccacc ccagccagtg gcaccaagat tattccatca acaggcagca agttgaaacg
    15901 accaacacca acttttcatt cgagtcgaac atcgcttgct ggcgatacta gcaatagttc
    15961 ttccccagcc tccacaggtg ccaaaaccaa tcgggcagac cctaaaaagt cagccagtcg
    16021 ccctgggagt cgggccggga gtcgggccgg gagtcgggcc agcagccggc gaggaagcga
    16081 tgcctctgac tttgaccttt tagagacgca gtctgcttgt tcagacactt cagagagcag
    16141 tgccgcaggg ggccagggca gctcgaggag agggctaaac aagccttcca aaatccccac
    16201 catgtctaag aagaccacca ctgcctcccc caggactccg ggtcccaagc ggtaacactg
    16261 cacaagcacc cccaagcctc tgtccacttt gaatcctgct ccacacattg ggtgtatatt
    16321 tattctgaat gggagaagtt atattgttaa aagtgtaaaa gaataattgt gttatgaagc
    16381 tgccttattt tttttctttt tgtaagttac tattttcatg tgaatattta tgtagataaa
    16441 atttgcctcc tggtaaccct gtaatggatg gggtccagaa atgaaatatt tgagaaaaat
    16501 aagcgaaaag atcaagatgc aaatgtgtat taaaatttta aaaagcctct aaatagggtt
    16561 tctgtgcggt gcagggttgt aaacctgctt tatcttttag gattattcct aaatgcatct
    16621 tctttataaa cttgacttgc tgtctcagca agataaatta tattaaaaaa aaataagaat
    16681 ccttcagtgt ttaaggaact ctttttttgt aaatcatggc cacctcaatt agcaagaact
    16741 gaggggaggg cacttctgac tgctttttcc attgttttta atattgtgta attttagctg
    16801 aagagaggga acctcatcta ggtaatgttt gcacatgata cagcaaaagg agttcattgc
    16861 aatactgtct ttgaatactg tttcagtact aggtgtttaa aggacaaata gctgctagaa
    16921 ttcaggggta aatataactg ttcagaaaac gtgagaacgt tggggttttt aagagtcctg
    16981 gttttaaaaa aaaaaaaaaa aaaaaaagag tcctggttta taacttccta tccagcccag
    17041 ccac
//
LOCUS       XM_032613206            5877 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA0754 ortholog (KIAA0754), mRNA.
ACCESSION   XM_032613206
VERSION     XM_032613206.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5877
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5877
                     /gene="KIAA0754"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116743965"
     CDS             1274..5284
                     /gene="KIAA0754"
                     /codon_start=1
                     /product="uncharacterized protein KIAA0754 homolog"
                     /protein_id="XP_032469097.1"
                     /db_xref="GeneID:116743965"
                     /translation="MGKPLSRPDCLRQNPICLGKGEEEDGYIEDCYVPQRSIYDTMRI
                     NEQIDQGSKLNQTSKSTMEKIEGSTISSNGTLGAAANVFESRAPEGKKLDERIIFDAI
                     KLSSDVQKSAPVPPRRRPNAERKDNVNRRSWKSFMPPNFPEFAERMEASLSEVSEAGA
                     SNPCLQEKKESSSALTESSGHLDQREPESESVTLEHVSKSIGIPEGQDVKTLGGDCQD
                     FRFQQHSAISPREFQPLESEAAAASGNTDVTQEHRFSSATWPRAMKSLAKGGFGEKQH
                     TLQDTGCTVEMPPLSPCLSEELLDPELHILIIPSLREKTESELKFEEDERWIMMEAEE
                     EWEEEKLSERGKTFLMADEEKNSLADVFQEREQANTVAVVEDGADFSAAVLGTFDHLA
                     LGQICCSDDAQPAKNLLASVFKDASLDYSCVLTGESAVGELRNRIAQGLEGLVSDLEC
                     TVGPADSEQLSDTDSVQMFLELEKECLCEEGVTPLVELETQASSEGLAPSQDAENSLV
                     ISHFPGAALEKEHVGLLNVRAKDSDPGLDCDYFNALDSSQVPNTLELTAYSDTVRDAS
                     TVSEEEGEKVPFSPETAGEFNFRHPADLESPGKPDTGGLSNSDHRASREENVSGFEAK
                     LAKENGGLSQLDCSEVEGNAEECVDRVPLSSAVSYELIDVTSGSEVEALPYDSHLLTD
                     EIHWEGEKGAINQGNNSLTSLGDVDLCELLSVEGACDEDGEAQALGYDARLEDRAPAH
                     LPRDLPEWVSQDLQRKSPESEILSLHLQVGGLGRSRDGVETVNDVKPKLNVASLEGGE
                     TEMRDSDSLLNILLEEQVTKASNTEPVLEEWIPIPQKPDPTAAVPTVEEDALDAAVPA
                     PEGTAVAALTVPFPEEGIPVVPVATMEAHVPAAAVSATERAAAPAVAVPAPEGTAPPA
                     SVAITEEDVLAVAESSLEGTAPAAALPTPEEPAAPAAAVPTTGELAAPTTVVPTPEEP
                     AAPAAAVPTREEPAAPTTVVPTPEEAATPVAAVPTPGEPAAPAAAVPTPGEFAAPAAA
                     VSTPGEPAAPAAAVPTPGEFAAPAAAVPTPGEFAASAAAVPTPGEPAAPAAAVPTPGE
                     PAAPAAAVPTPGEPAAPAAAVPTPGEPAAPAAAVPTPGEPATPGEAAAPAPAVPTPGE
                     PAAPAAAVPTREEPAPPTTVVPTPEEAATPAVAVPTPGEFAALPAAVSTPEESAAPAD
                     AVSTPGEFAALAAAESTPEEPAAPAAAVPTPGEPAAPAAAVPAVEEVFPAGVPFQGDT
                     AHTDSVPVLEEGSPVLEEASPAGTWIKEDLDSPAFGVKEVTGTVLHGKVPLAAVDGLN
                     SNEVIVAPVVGEGSGE"
     misc_feature    <3758..4288
                     /gene="KIAA0754"
                     /note="ribonuclease E; Reviewed; Region: rne; PRK10811"
                     /db_xref="CDD:236766"
ORIGIN      
        1 cctgccctcc tcccctagct gtccgcgtcg cgctccccgg cgtccagggg ggctgcccgg
       61 gcggggcggc gcggggaagg ggaggagagc cttccgccag ccgagcactt ccagcgagcg
      121 gcgggcgagc tggccgcgcg gcgcgaggga ggagggctcg cccccgctcg gcccgagagg
      181 agccttttgt tcccagccag aagtttgcat gccgggaccg tgacagctgc gggcggggag
      241 gacggcgggg ccggcggcgg cggagaatag aggcggctgc ttgacatgca gcccgcggcg
      301 cggcggctgc gggccgggga ctggaggcgg cggtgcccac agcatgcggg actcagctgc
      361 cggagggaca aactaacttc ctgagcgcgg gaccggaggc cggcgcggcc gggagccacc
      421 tgccagcctg cggtgaggca accctggccc tcggggcgcg cggcacggcg cgggggagca
      481 gcgctgagcg agcccttccg agtgaccctc ggccgccgct gcagcctgcc ggcctctgaa
      541 aggcccggca ccgggctcca ctcgccttgt ttggcggcca cggcgcaggg ctgttctggg
      601 agccacaaca atgccatgat gttttggaga caggaagccc caagctggcc gcgaatgaag
      661 gacttcctgt gtttaaagtt gcaggaatat ccgccgacca gcccagttca aatgcaaaca
      721 cccgaagtag ggaggacgaa tggctaattc agaccagctg gactctccag ggctggaact
      781 aaggataaaa tgaaaggaat tcctaggagc ttgggccata cttgaagacc agaggggctg
      841 tgccattgtt attaaaggac acaatcgata taaatcctct gcttccaact ctgcttgggt
      901 gagaagtgag tggaactaga tattgaataa gacttgtcaa tatcagatga ttttttttaa
      961 ctaagttgga aagagcagtg ctcttaaaaa aacaaaaaag ccatagaagg aattattttg
     1021 tttgttgaat acattgtacc acttatttgc ctgcaactat gaggctgcta acctgtgagg
     1081 aaaaagctgt tcttcttaga gcgtctctca gaatggtttc aaagtgggac tttcaggcct
     1141 ttctggaggg aagttccaat tggtggtttg aggttacgaa catgtaaaag gatttttaac
     1201 ttatgcagaa tgcattttgg gggaacccct gagaaacttt ttaaaggttg atggttcatc
     1261 ttgtttgaaa aatatgggta agccactcag caggccagac tgtttaaggc agaaccccat
     1321 ctgcctgggg aaaggagagg aagaggatgg ctatatagag gattgctatg ttccgcagcg
     1381 atctatatat gatacaatga ggataaatga acaaattgac caggggtcaa agcttaatca
     1441 gacttcaaaa agcaccatgg aaaagataga aggaagtact atatccagca atggtacatt
     1501 aggagcagca gctaatgttt ttgaatccag agcaccagaa ggcaaaaagt tggatgagag
     1561 aataatattt gatgcaataa agctaagcag tgatgtgcaa aagtcagcac ctgtgccacc
     1621 cagaaggcgg ccaaatgcag aacgcaaaga caatgttaac aggagatcat ggaagtcctt
     1681 catgccaccg aatttcccag aatttgcaga aaggatggaa gcttctctca gtgaggtttc
     1741 cgaagctggt gcttcaaatc cttgcttgca agagaagaaa gaatccagtt ctgcattaac
     1801 agaaagttct ggtcatttgg accaaaggga acctgagtca gagtccgtaa ctctggaaca
     1861 tgtgtccaaa tccataggta ttccagaagg gcaggatgtg aaaaccttag gtggagattg
     1921 ccaagacttc agatttcagc agcacagtgc gatctctccc cgtgaattcc agcctctaga
     1981 gtcagaagct gcagcagcaa gtggtaacac agatgtaacg caggaacaca gattctcaag
     2041 tgcaacctgg cccagagcca tgaaaagttt ggctaaggga ggctttggcg agaagcagca
     2101 cacccttcag gacacaggtt gcactgtaga aatgccacct ctctcccctt gcctgagtga
     2161 agagctgttg gatccagagt tgcatattct cataatcccc agcctgagag agaaaacaga
     2221 gtctgagctg aagtttgagg aggatgagcg atggatcatg atggaggctg aggaggagtg
     2281 ggaggaagag aaactgtcag agagaggaaa gacttttcta atggcagatg aggaaaagaa
     2341 cagcctggca gatgttttcc aagaaagaga gcaagcaaac actgtagcag tggtggagga
     2401 tggagccgac ttctcagctg ctgtcttggg gacttttgac cacctagctc ttggtcagat
     2461 ctgttgttct gatgacgcac agccagctaa gaaccttttg gcgtctgttt tcaaggatgc
     2521 atcgcttgat tacagttgtg tcctaacagg tgagagtgct gtaggagaac tgagaaacag
     2581 aattgctcag gggctagagg gtcttgtttc agatttagaa tgcactgttg gtcctgccga
     2641 ttcagagcag ctctctgaca cagattcagt gcagatgttt cttgaacttg aaaaggagtg
     2701 tttatgtgaa gaaggagtaa ctcctttagt tgagctggag actcaagcct cttctgaagg
     2761 gctggcccca tcccaggatg cagaaaattc acttgtaatt agtcatttcc caggggctgc
     2821 cttagaaaag gagcatgtag gccttttaaa tgtaagagca aaggactctg atcctgggtt
     2881 ggattgtgac tattttaatg ccctggattc ttctcaggtg cctaatactt tggaacttac
     2941 tgcctactct gataccgtga gggacgcttc cactgttagt gaggaggagg gtgaaaaagt
     3001 gccttttagc cccgagactg caggggaatt taactttaga cacccagctg atctggagtc
     3061 accaggaaag ccagacacag gaggattgtc caactctgat cacagggctt ctcgtgaaga
     3121 aaatgtatca ggctttgaag ccaagctggc caaagaaaat ggcggtttgt cccagctgga
     3181 ctgtagtgaa gttgagggga atgctgagga gtgtgtggac agagtccccc tcagttctgc
     3241 tgttagctat gaactaatag atgttacctc aggatctgaa gtagaggcgt taccatatga
     3301 ttcacattta ctaacagatg agattcattg ggaaggtgag aaaggagcta ttaatcaagg
     3361 aaataacagt ctgacttcct tgggagatgt ggacctttgt gaattgttgt ccgtggaagg
     3421 agcttgtgat gaggatggtg aagcacaggc actgggttat gatgccaggc tggaggaccg
     3481 agccccagca catcttccta gagacctccc agagtgggtc tcccaggatc tccagaggaa
     3541 gtccccagag tcagagatcc tgagtctgca cctgcaggtt ggaggactgg gacgtagcag
     3601 agatggagtg gaaactgtga atgacgtaaa gcccaagctg aatgtggcct cattggaggg
     3661 aggggaaaca gaaatgagag attcagattc attgctaaat atccttctgg aggaacaagt
     3721 taccaaggct agtaatacgg aaccagtttt ggaggaatgg atacccatcc cacagaagcc
     3781 tgacccaact gctgcagtgc ccactgtaga agaagatgcc ctagatgctg cagtgcctgc
     3841 cccagaggga actgctgtag ctgctcttac agtgcccttc ccagaggagg gtatacctgt
     3901 tgttccagtg gccaccatgg aggcacatgt cccagctgct gcagtatcag ccacagagag
     3961 ggctgctgcc ccagctgttg cagtgcctgc tcctgagggg actgctccac ctgcttcagt
     4021 ggccatcaca gaggaggatg tactagctgt tgcagaatcc tccctggagg ggactgctcc
     4081 agctgctgca ttgcccaccc cagaggagcc tgctgcccca gctgctgcag tgcccaccac
     4141 aggggagctt gcagctccca ctactgtggt gcccacccca gaggagcctg ctgccccagc
     4201 tgctgcagtg cccacccgag aggagcctgc agctcccact actgtggtgc ccaccccaga
     4261 ggaggctgcc accccagttg ctgcagtgcc caccccaggg gagcctgcag ccccagctgc
     4321 tgcagtgccc accccagggg agtttgcagc cccagctgct gcagtgtcca ctccagggga
     4381 gcctgcagcc ccagctgctg cagtgcccac cccaggggag tttgcagccc cagctgctgc
     4441 agtgcccacc ccaggggagt ttgcagcctc agctgctgca gtgcccaccc caggggagcc
     4501 tgcagcccca gctgctgcag tgcccacccc aggggagcct gcagccccag ctgctgcagt
     4561 gcccacccca ggggagcctg ccgccccagc tgctgcagtg cccaccccgg gggagcctgc
     4621 cgccccagct gctgcagtgc ccaccccagg ggagcctgcc accccagggg aggctgccgc
     4681 cccagctcct gcagtgccca ccccagggga gcctgctgcc cctgctgctg cagtgcccac
     4741 ccgagaggag cctgcacctc ccactactgt ggtgcccacc ccagaggagg ctgccacccc
     4801 agctgttgca gtgcccaccc caggggagtt tgcagccctg cctgctgcag tgtccacccc
     4861 agaggagtct gcagccccag ctgatgcagt gtccacccca ggggagtttg cagccctagc
     4921 tgctgcagag tccaccccgg aggagcctgc cgccccagct gctgcagtgc ccaccccagg
     4981 ggagcctgct gccccggctg ctgcagtgcc tgctgtggag gaagtgttcc ctgctggcgt
     5041 acccttccag ggagatactg cccatactga ctcagtgcct gtcttagaag aaggaagtcc
     5101 tgttctagag gaggcttccc ctgctggaac gtggatcaag gaggaccttg attccccagc
     5161 atttggagtg aaagaggtga ctggcacagt gctgcatggg aaagtgcctc tggctgcagt
     5221 tgatggatta aattcaaatg aggtaattgt tgctcctgtt gttggggaag gatctggaga
     5281 gtaaagtgag gtttgcaagt tctctgactt ggtggtgatt agaaagggca cagattgttc
     5341 tttctggttc cctttggggt gtctgggctt tcttgggctt ttttggtctt tttattgagt
     5401 ttatggggaa aatgtgtttt tatctgctga aaaacttcat aattcagact ctctcattgt
     5461 ttttaattca gacataagca aaacccaaag aaaacaggga tgtaaacagt ttttggctta
     5521 cattttgaaa aagattatta acaagaaagg gtgattctgc ttttgaattt tacaataagc
     5581 atgttctttc ctaaatcaag aggctgctta ttcatcggtg atgtcagcag tcaggtagag
     5641 gctagaatgt ggactttgga gtgagacctg gagtactttg taaccactct gaaacagtta
     5701 aatgtcctga ggctccagtt tcttcatttg ttaaggcaga agaaccctat gagggttgtg
     5761 aggataaaat gagataatcc attcaacgca ccaaacagaa gatttcaatt actatcgata
     5821 tgctcccccc ctttcccttt ctatctatct atctatttat ttatttattt atggctg
//
LOCUS       XM_032613220            1846 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus succinyl-CoA:3-ketoacid coenzyme A
            transferase 2, mitochondrial-like (LOC116743972), mRNA.
ACCESSION   XM_032613220
VERSION     XM_032613220.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-684               VOSU01000011.1     32169338-32170021
            685-685             "N"                1-1
            686-1179            VOSU01000011.1     32170022-32170515
            1180-1846           VOSU01000011.1     32170517-32171183
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1846
                     /gene="LOC116743972"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 18
                     Proteins, and 83% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116743972"
     CDS             1..1575
                     /gene="LOC116743972"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: succinyl-CoA:3-ketoacid
                     coenzyme A transferase 2, mitochondrial-like"
                     /protein_id="XP_032469111.1"
                     /db_xref="GeneID:116743972"
                     /translation="MAALRLLESALGRRVPAPGSVPALATGGVCGFASRARARAKSYA
                     DPVEAVRDIPDGARIMVRVFGLCAILENMIGALLKTRVKDLTVVSSNVGEENFGLGLF
                     LGTKQITHIVCLYLGENSLCEHRYLAGELELEITPQGTLAERIRAGGAGVPAFHTPTA
                     CGTLAQEGGAPSKYLEDGHISTLSQPREVREFHGQQYFLEHDVTADFALVKGWKADRA
                     GNVVFRASARXMCKAARTSVVGIEEIVDLVSFAPEDIHVPNIYLEDIHVPNIYLGRGI
                     QGGKYEKRNEHLMIRKEDDEICKSADSIRTRILKQAALDFEDGLYASLGIGIPLLATS
                     YISPSITVHLHSENGILGLCPFPLKEEVYAGLNNAGKQTVTLLPGGCFFSSDESFAMI
                     RGGHIDLTLLGAMQVSKYGDLANWMIPGKKVKGMGGTMDLVSGTKTRVMVTMEHSTKA
                     SEPKILEKCTRLLTGNWCVDRFDREGEIITEKAVFDVRGLTLIELWDGLMVEDIKKST
                     GSTFAISPNLSPMQHV"
     misc_feature    115..807
                     /gene="LOC116743972"
                     /note="Acyl CoA:acetate/3-ketoacid CoA transferase, alpha
                     subunit [Lipid transport and metabolism]; Region: AtoD;
                     COG1788"
                     /db_xref="CDD:441394"
     misc_feature    913..1542
                     /gene="LOC116743972"
                     /note="Sugar Phosphate Isomerase family; includes type A
                     ribose 5-phosphate isomerase (RPI_A),
                     glucosamine-6-phosphate (GlcN6P) deaminase, and
                     6-phosphogluconolactonase (6PGL). RPI catalyzes the
                     reversible conversion of ribose-5-phosphate to
                     ribulose...; Region: SugarP_isomerase; cl00339"
                     /db_xref="CDD:469729"
ORIGIN      
        1 atggcagccc tgcggctcct ggagtctgcg ctcgggcgcc gggtccccgc ccccggctcg
       61 gtgcccgcgc tggcgacggg cggtgtgtgc ggcttcgcca gcagagcccg cgcgcgtgcc
      121 aagtcctacg cggaccccgt ggaggccgtg agagacatcc cggacggcgc gaggatcatg
      181 gtccgggtct tcggcctctg cgcgatcctg gagaacatga taggggcgct gctcaagacc
      241 cgcgtgaagg acttgaccgt ggtcagcagc aatgtggggg aggagaactt cgggctcggc
      301 cttttcctgg ggaccaagca gatcacccac atcgtctgcc tgtacttggg ggagaactcg
      361 ctctgcgagc accggtacct ggcaggtgag ctggagctgg agatcacacc ccagggcacc
      421 ctggccgagc gcatccgcgc ggggggagcc ggcgtgccgg ccttccacac ccccacagcc
      481 tgcgggaccc tggcccagga gggaggcgca cccagcaagt acttagagga cggccacatc
      541 tccaccctga gtcagcccag ggaggtgagg gagttccacg gacagcagta ctttctggag
      601 cacgacgtca cggccgattt tgctttggtg aaagggtgga aggccgaccg ggcaggaaac
      661 gtcgtcttca gggccagcgc caggnccatg tgcaaagctg cgagaacctc agtggtgggg
      721 attgaagaaa ttgtggacct ggtgtcgttt gccccagagg acatccacgt tcctaacatt
      781 tacttagagg acatccatgt tcctaacatt tacttaggtc gaggaataca ggggggaaaa
      841 tatgagaaaa gaaacgagca tttaatgatc cggaaagagg atgatgaaat atgcaagtct
      901 gcagatagta taaggacacg gatcctcaag caggcagctc ttgactttga ggacggcctg
      961 tatgccagtt tgggcatagg aatccctctt ctggccacca gttacatcag ccccagcata
     1021 accgttcatc ttcacagtga aaatggaatc ttgggcttgt gtccgtttcc actgaaagag
     1081 gaggtgtacg caggtctcaa caatgcgggc aagcaaacag tcacccttct tcctgggggc
     1141 tgttttttct ccagcgatga atcatttgcc atgattcgag ggggacacat cgacctaacc
     1201 ttgctgggag ccatgcaggt ttccaaatat ggtgacctgg ctaactggat gatacccggc
     1261 aagaaggtga aaggaatggg gggtacgatg gatctggtgt ccggtaccaa gaccagagtg
     1321 atggtcacca tggagcactc caccaaggcc agtgaaccca aaatcttaga gaaatgcacc
     1381 agactgttga ctgggaattg gtgcgtggac cgctttgaca gagaaggtga aatcatcacc
     1441 gagaaggccg tgtttgacgt gagaggactg accctgatcg agctctggga cggcctgatg
     1501 gtggaggaca tcaaaaagag cacggggagc acctttgcca tctccccgaa tctcagcccc
     1561 atgcagcacg tctaaaccta gccggaaaat gaaccttggt cccagagcgt gtgcttctcc
     1621 ctttaacctc ctggattgca tcctgagaaa gccgcaatca catttctgca tttcaccagc
     1681 atctggccgg ctttctcctg ccatcccaga ctggctgcca ctggataggc tttgttctct
     1741 caagagggac atgcttttaa ttaaaaacaa aaggaaaaca gaggcactga ccttatatgt
     1801 cctgtgagtt ctgagaaagc tctgctccaa tcaccctcct ccctgt
//
LOCUS       XM_032613234            1278 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus bone morphogenetic protein 8B-like
            (LOC116743977), mRNA.
ACCESSION   XM_032613234
VERSION     XM_032613234.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1278
                     /gene="LOC116743977"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 22 Proteins, and 74%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116743977"
     CDS             1..1212
                     /gene="LOC116743977"
                     /codon_start=1
                     /product="bone morphogenetic protein 8B-like"
                     /protein_id="XP_032469125.1"
                     /db_xref="GeneID:116743977"
                     /translation="MAARPGRLWLLGLALCALSGGGASGPRPSPGCPQRRLGPRERRD
                     LQREILAVLRLPGRPRPRAPPAAARLPASAPLFMLDLYRAMAGDDDEDGGTPERRLGR
                     ADLVMSFVNMVERDRTLGHQEPQWKEFRFDLTQIPAGEAVTAAELRIYKLPSTHLLNW
                     TLHVSMFEVVLEKSNRESDLFFLDLQTLRSGDEGWLVLDVTAASDRWLLNRNKDLGLR
                     LYVETDDGRSVDPGLAGLLGQQAPRSKQPFVVTFFRASPGPVRAPRAVRPLKRRLPKR
                     TNELPPPNKLPGIFDDVHGSHGRQVCRRHELYVSFQDLGWLDWVIAPQGYSAYYCEGE
                     CSFPLDSCMNATNHAILQSLVHLMKPDAVPKACCAPTKLSATSVLYYDSSNNVILRKH
                     RNMVVRACGCH"
     misc_feature    100..756
                     /gene="LOC116743977"
                     /note="TGF-beta propeptide; Region: TGFb_propeptide;
                     pfam00688"
                     /db_xref="CDD:459906"
     misc_feature    895..1209
                     /gene="LOC116743977"
                     /note="transforming growth factor beta (TGF-beta) like
                     domain found in bone morphogenetic protein 8A (BMP-8A), 8B
                     (BMP-8B) and similar proteins; Region: TGF_beta_BMP8;
                     cd19398"
                     /db_xref="CDD:381668"
     misc_feature    order(919..921,925..927,937..942,946..948,976..978,
                     982..990,994..996,1039..1044,1051..1056,1060..1062,
                     1072..1074,1090..1092,1099..1110,1117..1119,1177..1185,
                     1189..1191,1207..1209)
                     /gene="LOC116743977"
                     /note="putative homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381668"
ORIGIN      
        1 atggccgcgc gccccgggcg gctctggctg ctgggcctgg cgctgtgcgc gctgagcggc
       61 ggcggcgcct ctggcccgcg cccctcgccc ggctgcccgc aacggcgcct gggcccgcgc
      121 gagcgccgcg atctgcagcg cgagatcctg gcggtgctcc ggctgcccgg gcggccccgg
      181 ccccgcgcgc cgcccgccgc cgcccggctg cccgcgtccg cgccgctctt catgctggac
      241 ctgtatcgcg ccatggccgg cgacgacgac gaggacggcg ggacccccga gcggcgcctg
      301 ggccgcgccg acctggtcat gagcttcgtc aacatggtgg agcgggaccg caccctgggc
      361 caccaggagc cccagtggaa ggagttccgc tttgacctga cccagatccc ggcgggggag
      421 gccgtcacgg ccgcggagct ccggatttac aagctgccca gtacccacct gctcaactgg
      481 accctccacg tcagcatgtt cgaggtggtc ctggagaagt ccaacaggga gtctgacttg
      541 ttctttttgg atcttcagac gctccgatct ggggacgagg gctggctggt gttggacgtg
      601 acagcagcca gtgaccgctg gctcttgaac cgtaacaagg acctgggact ccgcctctat
      661 gtggaaacag atgatgggcg cagcgtggat cctggcctgg ccggtctgct ggggcaacag
      721 gcaccgcgct ccaaacagcc tttcgtggtc acctttttca gggcgagccc cggccccgtc
      781 cgagcccctc gggcggtgag gcccctgaag aggaggctgc cgaaaagaac caacgagctg
      841 ccgcccccaa acaaactgcc ggggatcttc gacgacgtcc acggctccca cggccgacag
      901 gtgtgccgtc ggcatgagct ctatgtcagc ttccaggacc ttggctggct ggactgggtc
      961 atcgcccccc aaggctactc agcctattac tgtgaagggg agtgctcctt cccactggac
     1021 tcctgcatga acgccaccaa ccacgccatc ctgcagtccc tggtgcacct gatgaagcct
     1081 gacgcggtgc ccaaggcgtg ctgcgcgccc accaagctga gcgctacctc cgtgctctac
     1141 tacgacagca gcaacaacgt catcctgcgc aagcaccgca acatggtggt ccgcgcctgc
     1201 ggctgccact gaggccccgc cccgcctgct gcgccgcccc taccgggtca ggtcagccct
     1261 ccgcaggggg cacccccc
//
LOCUS       XM_032613249            1950 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116743981
            (LOC116743981), mRNA.
ACCESSION   XM_032613249
VERSION     XM_032613249.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1950
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1950
                     /gene="LOC116743981"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 80% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743981"
     CDS             362..1444
                     /gene="LOC116743981"
                     /codon_start=1
                     /product="uncharacterized protein LOC116743981"
                     /protein_id="XP_032469140.1"
                     /db_xref="GeneID:116743981"
                     /translation="MGNSLGCVKEPKDSIAVPEKTPISPKKRVRFKRKWRGKKTPTPE
                     VSREEEPLQGTGVIEETETLTKLTVSLQQEEGVGGVEPPPTDILLPGDSAPDSGVGDH
                     GMIVQVKERFQGEIQTAQLLLENESSVARGVWDSLEEGMTVIAHLLDNPAERSCEKSV
                     SQLVEFPRTASCSSRAVLLPLHGGTAVEKGDTQLGFGSSTFPRTDCPTDTRNQDHLSD
                     GWSVGGGTKGILSAPQTGAWIVERSPSSLPAQPRGQSCTEPAHVGRVPPQVPRLPASQ
                     SDLSISGLTESILPSSSGYGSDGLHLRGVQPKDTEPEKSSTSFSEEDGTLSLEASPTP
                     LGGLEEVGGHVQGVVTQRFVLLASNL"
ORIGIN      
        1 ctagctcctt tttgctttct gtttgtgttt ctgaaggcag tgctccaatt acctcatatt
       61 tggagagagg aagctgtagc caatccggtt tctgtctgct tttaggtcaa gtgatttctg
      121 aactgcagtg agatgctttg aatttgtctt gttgcagctc tgagcctgta agatggctgt
      181 ctgaatcggc agcggctgga agagacagag agaggcgggg agggaggaag aattggaggg
      241 atcgccggca tagtgcatgt ttttaaatgt gcatctaatc cgatgaagcc aaggttggga
      301 tttctctggg atcccaggac tggcttagct gcgtttttgc tgagattagg agaggaaagc
      361 aatgggaaat tcgctgggct gcgttaagga gccgaaagat tcaatagctg ttcctgagaa
      421 gactcccata tctcctaaga aaagggttcg gttcaaaagg aagtggaggg ggaagaaaac
      481 ccctactcca gaggtctctc gtgaggaaga acccttgcaa ggaactggag tcatcgaaga
      541 gacggaaacc ctgacgaagt taacagtgag tctccaacag gaggaaggag tgggaggggt
      601 agagccaccc cccacagaca ttttactgcc tggggactcg gcccctgact caggggtggg
      661 agatcacggg atgattgtgc aggtgaagga gagattccag ggggagatcc agactgctca
      721 gcttttgtta gagaatgagt catcagttgc cagaggggtc tgggattccc tggaagaggg
      781 gatgactgtc atcgctcacc tgctcgataa ccccgcagaa aggagctgtg agaagtcagt
      841 gagccaactg gtggaatttc cgaggacagc gtcctgcagc agcagggctg tgctgctgcc
      901 tttgcatgga gggactgcgg tggagaaagg agatactcag cttggatttg ggagcagcac
      961 tttccccagg acagactgcc ccactgacac aaggaatcaa gaccatcttt ccgacggatg
     1021 gagtgtaggg ggaggaacca agggtatttt aagcgcccct cagacaggtg cctggattgt
     1081 ggagcgttct ccttcgtcac tcccggccca gccgagaggc cagagctgca cagagcctgc
     1141 ccacgtgggt cgagtgcccc ctcaggttcc cagactgcct gcttctcaga gtgatttatc
     1201 catcagtggc ctgactgaga gcatcttgcc ctcctcctct ggctatggca gcgatgggct
     1261 gcacttacga ggggtccagc ctaaagatac agagcctgaa aagagctcca cgtccttctc
     1321 agaagaggat ggcacccttt ctttggaggc aagccccacc cccttagggg gtctggagga
     1381 ggtaggtggg catgttcaag gggtagttac acagcggttt gtattactgg cctcaaactt
     1441 atgaaagtgg aatgtggcga gcagtgagga gcttggtgct gctcctcaaa ctttacctgc
     1501 tagtcaagta ctagtagtta gcgactgctg cgcttggcaa gcaaaatcta tttcaggtct
     1561 gccccttgat gcttgaaact atcttgttgt ctctggggga tccccgactc tgggtaacca
     1621 tgctatataa ttgctcgagc tatctggtgg ggttatttct ccaggtgcag tgctgggtaa
     1681 tacttaactc tcagcaggtc tgtttattag tgtccctgct gtaggaggtt gtggtatggc
     1741 acggaggtga tggggaggcc tagctgattc caggatgagc gtggaagggg tgaggggtga
     1801 ggccctgact tcggtgtggt tgttcttctc cactggagaa tgatgttctt attggaggtg
     1861 atgtaattcc cccccttggg gacactgcta atgacaacac ccattcaata tgtgtttagg
     1921 tggagaggct agtcctcctt tggttcctaa
//
LOCUS       XM_032613263             580 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus peptidyl-prolyl cis-trans isomerase
            E-like (LOC116743984), mRNA.
ACCESSION   XM_032613263
VERSION     XM_032613263.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..580
                     /gene="LOC116743984"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 Proteins, and 83% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116743984"
     CDS             108..509
                     /gene="LOC116743984"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase E-like"
                     /protein_id="XP_032469154.1"
                     /db_xref="GeneID:116743984"
                     /translation="MTAENFRCLCIHEKGFGFKGSSFYRIIPQFMCQGSDFTSHNGTG
                     GKSIYGKKFDDENFILKHMGPGLLSMVNSGPNTNGSQFFLTCDKTDWLDGKHVVFGEI
                     TEGLDVLRQIEGSKDGKPKQKVIISDCGEYV"
     misc_feature    111..497
                     /gene="LOC116743984"
                     /note="cyclophilin-type peptidylprolyl cis- trans
                     isomerases. This family contains eukaryotic, bacterial and
                     archeal proteins which exhibit a peptidylprolyl cis- trans
                     isomerases activity (PPIase, Rotamase) and in addition
                     bind the immunosuppressive drug...; Region: cyclophilin;
                     cl00197"
                     /db_xref="CDD:469651"
     misc_feature    order(180..182,186..188,195..200,204..206,318..323,
                     348..350,354..356,378..383,393..395)
                     /gene="LOC116743984"
                     /note="active site"
                     /db_xref="CDD:238194"
ORIGIN      
        1 cccgctgtaa aaaaggccca gttaaaccct caggtgtaca tggacatcaa ggtcaggaac
       61 aagccagcag gccgcatcca gatgctctgc gttcagacgt cgttcccatg acagcagaga
      121 atttccgctg cctgtgcatc catgagaagg gctttggctt caagggcagc agcttctacc
      181 gcatcatccc ccagttcatg tgccagggca gcgatttcac cagccacaat ggcactgggg
      241 gcaagtccat ctacgggaag aagtttgacg atgaaaactt tattctcaaa cacatgggac
      301 caggcctgct ctccatggtc aactctggcc caaacaccaa cggctcccag ttcttcctga
      361 cgtgtgacaa gacggactgg ctggacggca agcacgtggt atttggggag atcacggaag
      421 gcctggacgt cttgcggcag attgagggca gcaaggatgg gaaacccaag cagaaggtca
      481 tcatctccga ctgtggggag tatgtgtgag agggcagctg tcagcccggg gaaccggcag
      541 ccaaggtgtc ccgtttgcag caagcagggc tttgtgtcct
//
LOCUS       XM_032613276            1207 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TATA-box binding protein associated
            factor 12 (TAF12), transcript variant X1, mRNA.
ACCESSION   XM_032613276
VERSION     XM_032613276.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1207
                     /gene="TAF12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 10 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116743989"
     CDS             114..755
                     /gene="TAF12"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 12
                     isoform X1"
                     /protein_id="XP_032469167.1"
                     /db_xref="GeneID:116743989"
                     /translation="MAASRFTGLTAVADVIKDLDTQIALIGLGPHSSKKKQDLDKLYE
                     LKSKARQIMNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTTVVKIPGTPGTGGRL
                     SPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKS
                     STLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK"
     misc_feature    432..653
                     /gene="TAF12"
                     /note="histone-fold domain found in transcription
                     initiation factor TFIID subunit 12 (TAF12) and similar
                     proteins; Region: HFD_TAF12; cd07981"
                     /db_xref="CDD:467025"
     misc_feature    order(432..443,453..455,465..467,474..479,519..521,
                     528..536,540..548,555..560,567..569,576..578,600..608,
                     615..620,627..629,639..641,645..647,651..653)
                     /gene="TAF12"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467025"
     misc_feature    order(495..497,507..509,519..521,582..590,621..623,
                     633..635)
                     /gene="TAF12"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467025"
ORIGIN      
        1 ggaagtactc ggggagggcc gagcagtcgg accggctgct gagacgagcg cttcactggg
       61 gcagtctccg catatcatgg ggagatagac gctgctgcct gtagcttttg aaaatggctg
      121 cctctcgttt caccgggctc acagccgttg ctgatgtaat taaagatcta gacacccaga
      181 tagctttgat tggccttggt cctcatagct ccaaaaagaa acaagatctt gataagctct
      241 atgagctgaa gtccaaagcg cggcagatta tgaaccagtt tggcccctca gccctaatca
      301 acctgtccaa tttctcatca ataaaaccgg aaccagctag cacccctcca caaggctcca
      361 tggccaatag cactacagtg gtaaagatcc caggcactcc tgggacagga gggcgtctca
      421 gccctgaaaa caatcaggta ttgaccaaga agaaattaca agacttagta agagaagtgg
      481 atcctaatga gcaactggat gaagatgtgg aggagatgct gctgcagatt gctgatgatt
      541 ttatcgagag cgtggtgaca gcagcatgcc agcttgctcg gcatcgcaag tccagcaccc
      601 tggaggtgaa agatgtccag ctgcatctag aacgccagtg gaacatgtgg atcccagggt
      661 ttggctctga agaaatacga ccctacaaaa aagcttgcac cacagaagct cacaaacaga
      721 gaatggcatt gatccggaaa acaaccaaga aataacacac agaaaggtca gggaatggac
      781 aacaatgtat ttggagatac ttgagctgag acctcagcca tctcaccctt ggattttttt
      841 ttttttaatg ctttacagag aagcatatat tttttattaa cagtgcagca atatctataa
      901 tgactgagag gatctgccaa aagaataaag cctcctaccc caacttccgg cccctttttc
      961 ctgccgtctc aaagaggagc agtgtatctt ccagagaaga ttttatttgt ggtttattat
     1021 ataagtgatt gaattgggga aaagcattat ggtcttgttt ggtgagagag tattagcagg
     1081 atttgtagag gtttttgttt ccttctccct cccccttttc cctgtacttt gtaatgtcag
     1141 tgtttatatg aatatgactt tcatttgctt ttccagataa aagaaattat tattgaaaga
     1201 cacaggg
//
LOCUS       XM_032613282            1145 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TATA-box binding protein associated
            factor 12 (TAF12), transcript variant X2, mRNA.
ACCESSION   XM_032613282
VERSION     XM_032613282.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1145
                     /gene="TAF12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116743989"
     CDS             117..704
                     /gene="TAF12"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 12
                     isoform X2"
                     /protein_id="XP_032469173.1"
                     /db_xref="GeneID:116743989"
                     /translation="MVSKYQLIGLGPHSSKKKQDLDKLYELKSKARQIMNQFGPSALI
                     NLSNFSSIKPEPASTPPQGSMANSTTVVKIPGTPGTGGRLSPENNQVLTKKKLQDLVR
                     EVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNM
                     WIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK"
     misc_feature    381..602
                     /gene="TAF12"
                     /note="histone-fold domain found in transcription
                     initiation factor TFIID subunit 12 (TAF12) and similar
                     proteins; Region: HFD_TAF12; cd07981"
                     /db_xref="CDD:467025"
     misc_feature    order(381..392,402..404,414..416,423..428,468..470,
                     477..485,489..497,504..509,516..518,525..527,549..557,
                     564..569,576..578,588..590,594..596,600..602)
                     /gene="TAF12"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467025"
     misc_feature    order(444..446,456..458,468..470,531..539,570..572,
                     582..584)
                     /gene="TAF12"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467025"
ORIGIN      
        1 gacccgcgtc gcctgcatcg gcaggcagac tctcaaccac tgcgccacca gggaagccct
       61 catttacttc tttatttcac ttgtgtggac tattttattt agcttttgga gaagagatgg
      121 tttctaagta tcagttgatt ggccttggtc ctcatagctc caaaaagaaa caagatcttg
      181 ataagctcta tgagctgaag tccaaagcgc ggcagattat gaaccagttt ggcccctcag
      241 ccctaatcaa cctgtccaat ttctcatcaa taaaaccgga accagctagc acccctccac
      301 aaggctccat ggccaatagc actacagtgg taaagatccc aggcactcct gggacaggag
      361 ggcgtctcag ccctgaaaac aatcaggtat tgaccaagaa gaaattacaa gacttagtaa
      421 gagaagtgga tcctaatgag caactggatg aagatgtgga ggagatgctg ctgcagattg
      481 ctgatgattt tatcgagagc gtggtgacag cagcatgcca gcttgctcgg catcgcaagt
      541 ccagcaccct ggaggtgaaa gatgtccagc tgcatctaga acgccagtgg aacatgtgga
      601 tcccagggtt tggctctgaa gaaatacgac cctacaaaaa agcttgcacc acagaagctc
      661 acaaacagag aatggcattg atccggaaaa caaccaagaa ataacacaca gaaaggtcag
      721 ggaatggaca acaatgtatt tggagatact tgagctgaga cctcagccat ctcacccttg
      781 gatttttttt tttttaatgc tttacagaga agcatatatt ttttattaac agtgcagcaa
      841 tatctataat gactgagagg atctgccaaa agaataaagc ctcctacccc aacttccggc
      901 ccctttttcc tgccgtctca aagaggagca gtgtatcttc cagagaagat tttatttgtg
      961 gtttattata taagtgattg aattggggaa aagcattatg gtcttgtttg gtgagagagt
     1021 attagcagga tttgtagagg tttttgtttc cttctccctc ccccttttcc ctgtactttg
     1081 taatgtcagt gtttatatga atatgacttt catttgcttt tccagataaa agaaattatt
     1141 attga
//
LOCUS       XM_032613285            1117 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TATA-box binding protein associated
            factor 12 (TAF12), transcript variant X3, mRNA.
ACCESSION   XM_032613285
VERSION     XM_032613285.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1117
                     /gene="TAF12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 2 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116743989"
     CDS             195..680
                     /gene="TAF12"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 12
                     isoform X3"
                     /protein_id="XP_032469176.1"
                     /db_xref="GeneID:116743989"
                     /translation="MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTTVVKIPGTP
                     GTGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQL
                     ARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTK
                     K"
     misc_feature    357..578
                     /gene="TAF12"
                     /note="histone-fold domain found in transcription
                     initiation factor TFIID subunit 12 (TAF12) and similar
                     proteins; Region: HFD_TAF12; cd07981"
                     /db_xref="CDD:467025"
     misc_feature    order(357..368,378..380,390..392,399..404,444..446,
                     453..461,465..473,480..485,492..494,501..503,525..533,
                     540..545,552..554,564..566,570..572,576..578)
                     /gene="TAF12"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467025"
     misc_feature    order(420..422,432..434,444..446,507..515,546..548,
                     558..560)
                     /gene="TAF12"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467025"
ORIGIN      
        1 gagcggtgcc ggaagtactc ggggagggcc gagcagtcgg accggctgct gagacgagcg
       61 cttcactggg gcagtctccg catatcatgg ggagatagac gctgctgcct ttgattggcc
      121 ttggtcctca tagctccaaa aagaaacaag atcttgataa gctctatgag ctgaagtcca
      181 aagcgcggca gattatgaac cagtttggcc cctcagccct aatcaacctg tccaatttct
      241 catcaataaa accggaacca gctagcaccc ctccacaagg ctccatggcc aatagcacta
      301 cagtggtaaa gatcccaggc actcctggga caggagggcg tctcagccct gaaaacaatc
      361 aggtattgac caagaagaaa ttacaagact tagtaagaga agtggatcct aatgagcaac
      421 tggatgaaga tgtggaggag atgctgctgc agattgctga tgattttatc gagagcgtgg
      481 tgacagcagc atgccagctt gctcggcatc gcaagtccag caccctggag gtgaaagatg
      541 tccagctgca tctagaacgc cagtggaaca tgtggatccc agggtttggc tctgaagaaa
      601 tacgacccta caaaaaagct tgcaccacag aagctcacaa acagagaatg gcattgatcc
      661 ggaaaacaac caagaaataa cacacagaaa ggtcagggaa tggacaacaa tgtatttgga
      721 gatacttgag ctgagacctc agccatctca cccttggatt tttttttttt taatgcttta
      781 cagagaagca tatatttttt attaacagtg cagcaatatc tataatgact gagaggatct
      841 gccaaaagaa taaagcctcc taccccaact tccggcccct ttttcctgcc gtctcaaaga
      901 ggagcagtgt atcttccaga gaagatttta tttgtggttt attatataag tgattgaatt
      961 ggggaaaagc attatggtct tgtttggtga gagagtatta gcaggatttg tagaggtttt
     1021 tgtttccttc tccctccccc ttttccctgt actttgtaat gtcagtgttt atatgaatat
     1081 gactttcatt tgcttttcca gataaaagaa attatta
//
LOCUS       XM_032613291            2662 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tyrosine-protein phosphatase non-receptor
            type 11-like (LOC116744012), transcript variant X1, mRNA.
ACCESSION   XM_032613291
VERSION     XM_032613291.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2662
                     /gene="LOC116744012"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744012"
     CDS             165..2114
                     /gene="LOC116744012"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     11-like isoform X1"
                     /protein_id="XP_032469182.1"
                     /db_xref="GeneID:116744012"
                     /translation="MEVRTEPVLPQGSRLVMKTWGDRWFHPNTGGAEAERLLLSKGQH
                     GSFLARPSKSRPGGFTLSVRRRDEVTHIKIQNTGDYYDLYGGEKFATLAELVQHYTGQ
                     RGGLLRERGGAPVELWHPLSCQDPTSERWYHGHLSGKEAEKLLMQKGRPGSFLVRESQ
                     SKPGDFVLSVLTQQLDRADRQARVTHVMIHFQPDGKYDVGGGERFDTLGDLVECYRKN
                     PLVERSGTVVHLQQPLKTTRISATSIESRVRELNEAMDASEKAKQGFWEEFEMLQQQE
                     CRLLYPRKEGQRLENKPKNRYKNILPFDTTRVILRDVEDSVPGADYINANYIRQAVDP
                     TSFQSDLEEKPGHGPGKVYIATQGCLPTTAAAFWAMVHQENTRVIVMTTREVERGRNK
                     CFRYWPELHGSQEYGRLRVCNVAEHQAQGYCVRELQVWRADQEESPRTVAHCQYFGWP
                     DHGVPAEPAGVLGFLDEVNRAQSGMPGAGPMVVHCSAGIGRTGTIIVIDILVDVIRRQ
                     GLDCDIDVPKTIQHVRRQRSGMVQTEAQYKFVYLALQRYIRGEQLRLREQHPGGLRPR
                     VREPAAPLAVRAPSARAPIGAGAVREGGSPARPALAFLQRTVFRTVQTGAQPRALRGW
                     GAGVPGLPLRPSLTRSARPEMVREV"
     misc_feature    231..527
                     /gene="LOC116744012"
                     /note="N-terminal Src homology 2 (N-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; Region:
                     SH2_N-SH2_SHP_like; cd10340"
                     /db_xref="CDD:198203"
     misc_feature    order(255..257,312..314,375..377,381..383)
                     /gene="LOC116744012"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198203"
     misc_feature    order(372..380,420..422,483..494,498..500)
                     /gene="LOC116744012"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198203"
     misc_feature    552..866
                     /gene="LOC116744012"
                     /note="C-terminal Src homology 2 (C-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; Region:
                     SH2_C-SH2_SHP_like; cd09931"
                     /db_xref="CDD:198185"
     misc_feature    order(636..638,642..644,657..662)
                     /gene="LOC116744012"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198185"
     misc_feature    order(723..725,807..809)
                     /gene="LOC116744012"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198185"
     misc_feature    1035..1808
                     /gene="LOC116744012"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; Region:
                     PTP_DSP_cys; cl28904"
                     /db_xref="CDD:475123"
ORIGIN      
        1 gcggcaggga gctcgacccc aggcccagaa agtgcccagg aagtgcctgg ctggtggcat
       61 ccctccttcc tccagggaga gccgcatggg agctctggtt ggccctgtgc aggtcacctg
      121 agcttctggg cctctctgaa ccagtacgtg gaccctgggg agccatggag gtcagaacgg
      181 agcctgtcct cccccagggc tcacgtctgg tgatgaagac atggggagac aggtggtttc
      241 atcccaacac cggcggggct gaggcggagc ggctgctcct gtccaagggc cagcacggga
      301 gcttcctggc aagacccagc aagagccgcc cagggggctt cacgctgtcc gtcaggcgcc
      361 gcgacgaggt gacccacatc aagatccaga acacaggcga ctactatgat ctgtacggag
      421 gggagaagtt cgcgacgctg gccgagctgg tgcagcacta cacaggccag cgcggggggc
      481 tgctccgaga gcgtggcggg gcccccgtgg agctctggca cccgctgagc tgccaggacc
      541 ccacgtcgga acggtggtac catgggcacc tgtctggcaa ggaggccgag aagctgctga
      601 tgcagaaggg gcgtccgggc agcttcctgg ttcgggagag tcagagcaaa cctggggact
      661 tcgtgctgtc agtgctcaca cagcagctgg acagggcgga ccgccaggca cgcgtcaccc
      721 atgtcatgat acacttccag ccagatggga agtacgatgt gggaggtggc gagaggtttg
      781 acaccctggg agatctggtg gaatgctaca ggaagaaccc tctggtggag aggtcgggga
      841 ccgtagtgca cctccagcag cccctcaaga ccacgagaat cagcgccaca agcattgaga
      901 gccgtgtgcg ggagctcaac gaggccatgg atgccagcga gaaggccaag cagggcttct
      961 gggaggagtt cgagatgctg cagcagcagg aatgccggct cctgtatccc cggaaagagg
     1021 gccagcggct ggagaacaag cccaagaacc gatacaagaa catcctcccc tttgatacca
     1081 cccgtgtcat cctgcgtgat gtggaggaca gcgtgcctgg agccgactac atcaacgcca
     1141 actacatcag gcaggcagtg gaccccacct cctttcagag tgacctagag gagaagccag
     1201 gccacggacc aggcaaggtg tacatcgcca cccagggctg tctgccaact acggcggctg
     1261 ccttctgggc catggtgcac caggagaaca cgcgtgtcat cgtcatgacc accagagagg
     1321 tggagcgagg ccggaacaag tgtttccgat actggccaga actgcacggc agccaagagt
     1381 atggccgcct gcgtgtgtgc aacgttgctg agcaccaggc ccagggctat tgtgtgaggg
     1441 agctgcaggt gtggagggca gaccaggagg agtcaccgcg cacagtggcg cactgccagt
     1501 acttcggctg gccggaccac ggagtcccgg ccgagcccgc cggcgtcctt ggcttcctgg
     1561 acgaggtgaa ccgggcccag agcggcatgc cgggggccgg acccatggta gtgcactgca
     1621 gcgccggcat cggacgcact ggcacaatca ttgtgattga catcttggtg gacgtcattc
     1681 gcaggcaggg gctggactgc gacatcgacg tccccaagac gatccagcat gtgcggcggc
     1741 agcgctcggg gatggtgcag accgaggcgc agtacaagtt cgtgtacctg gcgctgcagc
     1801 ggtacatccg gggcgagcag ctacgcctgc gcgagcagca ccccggaggc ctccggccac
     1861 gtgtacgaga acctgctgcg cctctggccg tgagggcccc gagtgcgcgc gccccgattg
     1921 gggctggagc cgtgcgagaa ggcgggagcc cagcaaggcc ggccctcgcg ttcctccaaa
     1981 ggactgtgtt taggactgtg cagaccggcg cccagcccag agcgttgcgg ggttgggggg
     2041 cgggggtccc gggtctgccc ctcagaccct ccctgaccag gtctgcacgt ccagaaatgg
     2101 tgagggaagt ttaggagatc cggtgtccct gcccctcctg gaggagggga ggcagggctg
     2161 cagggctgcg gtttgtctca gtgtgggagg ccaccagtga ccacctgcac ggcgcagtga
     2221 cgatgtgtga ccttgtgtgt gccacacgtt tgagtgtcag cctgtatgtg ggacacgggt
     2281 gaccagcaag tgagtgccag tccgtggtca ccagcgtttg tgcccctctc ccctgcatcc
     2341 tgcatgcccc ccacccctta aaagctgctt ctcagccctg cccacagccg tggtctagga
     2401 tgtgggccag gcagtggctc cgttcctgcc gtgtccaggc ctagcccaga ccgtcacatt
     2461 gctgtcacga gtggacacgt gtttgttgaa tgagagaata tgtgacgtgc ttgtgtgacc
     2521 acggtgatga gggcggggct ccatgtgtgc ctggctggtt tgtgatggtg tgatgtcact
     2581 ggcctgtggt ccacggctgc accctcccat catggatgtc cctgtggctt tgtggtttcc
     2641 tcagtaaaat gccttcttct ca
//
LOCUS       XM_032613301            2192 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tyrosine-protein phosphatase non-receptor
            type 11-like (LOC116744012), transcript variant X2, mRNA.
ACCESSION   XM_032613301
VERSION     XM_032613301.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2192
                     /gene="LOC116744012"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744012"
     CDS             165..2063
                     /gene="LOC116744012"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     11-like isoform X2"
                     /protein_id="XP_032469192.1"
                     /db_xref="GeneID:116744012"
                     /translation="MEVRTEPVLPQGSRLVMKTWGDRWFHPNTGGAEAERLLLSKGQH
                     GSFLARPSKSRPGGFTLSVRRRDEVTHIKIQNTGDYYDLYGGEKFATLAELVQHYTGQ
                     RGGLLRERGGAPVELWHPLSCQDPTSERWYHGHLSGKEAEKLLMQKGRPGSFLVRESQ
                     SKPGDFVLSVLTQQLDRADRQARVTHVMIHFQPDGKYDVGGGERFDTLGDLVECYRKN
                     PLVERSGTVVHLQQPLKTTRISATSIESRVRELNEAMDASEKAKQGFWEEFEMLQQQE
                     CRLLYPRKEGQRLENKPKNRYKNILPFDTTRVILRDVEDSVPGADYINANYIRQAVDP
                     TSFQSDLEEKPGHGPGKVYIATQGCLPTTAAAFWAMVHQENTRVIVMTTREVERGRNK
                     CFRYWPELHGSQEYGRLRVCNVAEHQAQGYCVRELQVWRADQEESPRTVAHCQYFGWP
                     DHGVPAEPAGVLGFLDEVNRAQSGMPGAGPMVVHCSAGIGRTGTIIVIDILVDVIRRQ
                     GLDCDIDVPKTIQHVRRQRSGMVQTEAQYKFVYLALQRYIRGEQLRLREQVGAGPGRG
                     GTSGGTTMVTSGPSPQREPPEERDSLKVGASPADPGCSPGTAPSRAPAATPEASGHVY
                     ENLLRLWP"
     misc_feature    231..527
                     /gene="LOC116744012"
                     /note="N-terminal Src homology 2 (N-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; Region:
                     SH2_N-SH2_SHP_like; cd10340"
                     /db_xref="CDD:198203"
     misc_feature    order(255..257,312..314,375..377,381..383)
                     /gene="LOC116744012"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198203"
     misc_feature    order(372..380,420..422,483..494,498..500)
                     /gene="LOC116744012"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198203"
     misc_feature    552..866
                     /gene="LOC116744012"
                     /note="C-terminal Src homology 2 (C-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; Region:
                     SH2_C-SH2_SHP_like; cd09931"
                     /db_xref="CDD:198185"
     misc_feature    order(636..638,642..644,657..662)
                     /gene="LOC116744012"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198185"
     misc_feature    order(723..725,807..809)
                     /gene="LOC116744012"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198185"
     misc_feature    1035..1808
                     /gene="LOC116744012"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; Region:
                     PTP_DSP_cys; cl28904"
                     /db_xref="CDD:475123"
ORIGIN      
        1 gcggcaggga gctcgacccc aggcccagaa agtgcccagg aagtgcctgg ctggtggcat
       61 ccctccttcc tccagggaga gccgcatggg agctctggtt ggccctgtgc aggtcacctg
      121 agcttctggg cctctctgaa ccagtacgtg gaccctgggg agccatggag gtcagaacgg
      181 agcctgtcct cccccagggc tcacgtctgg tgatgaagac atggggagac aggtggtttc
      241 atcccaacac cggcggggct gaggcggagc ggctgctcct gtccaagggc cagcacggga
      301 gcttcctggc aagacccagc aagagccgcc cagggggctt cacgctgtcc gtcaggcgcc
      361 gcgacgaggt gacccacatc aagatccaga acacaggcga ctactatgat ctgtacggag
      421 gggagaagtt cgcgacgctg gccgagctgg tgcagcacta cacaggccag cgcggggggc
      481 tgctccgaga gcgtggcggg gcccccgtgg agctctggca cccgctgagc tgccaggacc
      541 ccacgtcgga acggtggtac catgggcacc tgtctggcaa ggaggccgag aagctgctga
      601 tgcagaaggg gcgtccgggc agcttcctgg ttcgggagag tcagagcaaa cctggggact
      661 tcgtgctgtc agtgctcaca cagcagctgg acagggcgga ccgccaggca cgcgtcaccc
      721 atgtcatgat acacttccag ccagatggga agtacgatgt gggaggtggc gagaggtttg
      781 acaccctggg agatctggtg gaatgctaca ggaagaaccc tctggtggag aggtcgggga
      841 ccgtagtgca cctccagcag cccctcaaga ccacgagaat cagcgccaca agcattgaga
      901 gccgtgtgcg ggagctcaac gaggccatgg atgccagcga gaaggccaag cagggcttct
      961 gggaggagtt cgagatgctg cagcagcagg aatgccggct cctgtatccc cggaaagagg
     1021 gccagcggct ggagaacaag cccaagaacc gatacaagaa catcctcccc tttgatacca
     1081 cccgtgtcat cctgcgtgat gtggaggaca gcgtgcctgg agccgactac atcaacgcca
     1141 actacatcag gcaggcagtg gaccccacct cctttcagag tgacctagag gagaagccag
     1201 gccacggacc aggcaaggtg tacatcgcca cccagggctg tctgccaact acggcggctg
     1261 ccttctgggc catggtgcac caggagaaca cgcgtgtcat cgtcatgacc accagagagg
     1321 tggagcgagg ccggaacaag tgtttccgat actggccaga actgcacggc agccaagagt
     1381 atggccgcct gcgtgtgtgc aacgttgctg agcaccaggc ccagggctat tgtgtgaggg
     1441 agctgcaggt gtggagggca gaccaggagg agtcaccgcg cacagtggcg cactgccagt
     1501 acttcggctg gccggaccac ggagtcccgg ccgagcccgc cggcgtcctt ggcttcctgg
     1561 acgaggtgaa ccgggcccag agcggcatgc cgggggccgg acccatggta gtgcactgca
     1621 gcgccggcat cggacgcact ggcacaatca ttgtgattga catcttggtg gacgtcattc
     1681 gcaggcaggg gctggactgc gacatcgacg tccccaagac gatccagcat gtgcggcggc
     1741 agcgctcggg gatggtgcag accgaggcgc agtacaagtt cgtgtacctg gcgctgcagc
     1801 ggtacatccg gggcgagcag ctacgcctgc gcgagcaggt gggggcaggg ccgggccggg
     1861 gcggaaccag cgggggcacc accatggtga ccagcggccc ctcccctcag cgcgagccgc
     1921 ccgaggagcg cgactccctg aaggtgggcg cctcgcccgc cgaccccggc tgtagccccg
     1981 gaaccgcgcc gtcccgggcg ccggcggcca ccccggaggc ctccggccac gtgtacgaga
     2041 acctgctgcg cctctggccg tgagggcccc gagtgcgcgc gccccgattg gggctggagc
     2101 cgtgcgagaa ggcgggagcc cagcaaggcc ggccctcgcg ttcctccaaa ggactgtgtt
     2161 taggactgtg cagaccggcg cccagcccag ag
//
LOCUS       XM_032613307            2120 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tyrosine-protein phosphatase non-receptor
            type 11-like (LOC116744012), transcript variant X3, mRNA.
ACCESSION   XM_032613307
VERSION     XM_032613307.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2120
                     /gene="LOC116744012"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744012"
     CDS             165..1991
                     /gene="LOC116744012"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     11-like isoform X3"
                     /protein_id="XP_032469198.1"
                     /db_xref="GeneID:116744012"
                     /translation="MEVRTEPVLPQGSRLVMKTWGDRWFHPNTGGAEAERLLLSKGQH
                     GSFLARPSKSRPGGFTLSVRRRDEVTHIKIQNTGDYYDLYGGEKFATLAELVQHYTGQ
                     RGGLLRERGGAPVELWHPLSCQDPTSERWYHGHLSGKEAEKLLMQKGRPGSFLVRESQ
                     SKPGDFVLSVLTQQLDRADRQARVTHVMIHFQPDGKYDVGGGERFDTLGDLVECYRKN
                     PLVERSGTVVHLQQPLKTTRISATSIESRVRELNEAMDASEKAKQGFWEEFEMLQQQE
                     CRLLYPRKEGQRLENKPKNRYKNILPFDTTRVILRDVEDSVPGADYINANYIRQAVDP
                     TSFQSDLEEKPGHGPGKVYIATQGCLPTTAAAFWAMVHQENTRVIVMTTREVERGRNK
                     CFRYWPELHGSQEYGRLRVCNVAEHQAQGYCVRELQVWRADQEESPRTVAHCQYFGWP
                     DHGVPAEPAGVLGFLDEVNRAQSGMPGAGPMVVHCSAGIGRTGTIIVIDILVDVIRRQ
                     GLDCDIDVPKTIQHVRRQRSGMVQTEAQYKFVYLALQRYIRGEQLRLREQREPPEERD
                     SLKVGASPADPGCSPGTAPSRAPAATPEASGHVYENLLRLWP"
     misc_feature    231..527
                     /gene="LOC116744012"
                     /note="N-terminal Src homology 2 (N-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; Region:
                     SH2_N-SH2_SHP_like; cd10340"
                     /db_xref="CDD:198203"
     misc_feature    order(255..257,312..314,375..377,381..383)
                     /gene="LOC116744012"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198203"
     misc_feature    order(372..380,420..422,483..494,498..500)
                     /gene="LOC116744012"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198203"
     misc_feature    552..866
                     /gene="LOC116744012"
                     /note="C-terminal Src homology 2 (C-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; Region:
                     SH2_C-SH2_SHP_like; cd09931"
                     /db_xref="CDD:198185"
     misc_feature    order(636..638,642..644,657..662)
                     /gene="LOC116744012"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198185"
     misc_feature    order(723..725,807..809)
                     /gene="LOC116744012"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198185"
     misc_feature    1035..1808
                     /gene="LOC116744012"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; Region:
                     PTP_DSP_cys; cl28904"
                     /db_xref="CDD:475123"
ORIGIN      
        1 gcggcaggga gctcgacccc aggcccagaa agtgcccagg aagtgcctgg ctggtggcat
       61 ccctccttcc tccagggaga gccgcatggg agctctggtt ggccctgtgc aggtcacctg
      121 agcttctggg cctctctgaa ccagtacgtg gaccctgggg agccatggag gtcagaacgg
      181 agcctgtcct cccccagggc tcacgtctgg tgatgaagac atggggagac aggtggtttc
      241 atcccaacac cggcggggct gaggcggagc ggctgctcct gtccaagggc cagcacggga
      301 gcttcctggc aagacccagc aagagccgcc cagggggctt cacgctgtcc gtcaggcgcc
      361 gcgacgaggt gacccacatc aagatccaga acacaggcga ctactatgat ctgtacggag
      421 gggagaagtt cgcgacgctg gccgagctgg tgcagcacta cacaggccag cgcggggggc
      481 tgctccgaga gcgtggcggg gcccccgtgg agctctggca cccgctgagc tgccaggacc
      541 ccacgtcgga acggtggtac catgggcacc tgtctggcaa ggaggccgag aagctgctga
      601 tgcagaaggg gcgtccgggc agcttcctgg ttcgggagag tcagagcaaa cctggggact
      661 tcgtgctgtc agtgctcaca cagcagctgg acagggcgga ccgccaggca cgcgtcaccc
      721 atgtcatgat acacttccag ccagatggga agtacgatgt gggaggtggc gagaggtttg
      781 acaccctggg agatctggtg gaatgctaca ggaagaaccc tctggtggag aggtcgggga
      841 ccgtagtgca cctccagcag cccctcaaga ccacgagaat cagcgccaca agcattgaga
      901 gccgtgtgcg ggagctcaac gaggccatgg atgccagcga gaaggccaag cagggcttct
      961 gggaggagtt cgagatgctg cagcagcagg aatgccggct cctgtatccc cggaaagagg
     1021 gccagcggct ggagaacaag cccaagaacc gatacaagaa catcctcccc tttgatacca
     1081 cccgtgtcat cctgcgtgat gtggaggaca gcgtgcctgg agccgactac atcaacgcca
     1141 actacatcag gcaggcagtg gaccccacct cctttcagag tgacctagag gagaagccag
     1201 gccacggacc aggcaaggtg tacatcgcca cccagggctg tctgccaact acggcggctg
     1261 ccttctgggc catggtgcac caggagaaca cgcgtgtcat cgtcatgacc accagagagg
     1321 tggagcgagg ccggaacaag tgtttccgat actggccaga actgcacggc agccaagagt
     1381 atggccgcct gcgtgtgtgc aacgttgctg agcaccaggc ccagggctat tgtgtgaggg
     1441 agctgcaggt gtggagggca gaccaggagg agtcaccgcg cacagtggcg cactgccagt
     1501 acttcggctg gccggaccac ggagtcccgg ccgagcccgc cggcgtcctt ggcttcctgg
     1561 acgaggtgaa ccgggcccag agcggcatgc cgggggccgg acccatggta gtgcactgca
     1621 gcgccggcat cggacgcact ggcacaatca ttgtgattga catcttggtg gacgtcattc
     1681 gcaggcaggg gctggactgc gacatcgacg tccccaagac gatccagcat gtgcggcggc
     1741 agcgctcggg gatggtgcag accgaggcgc agtacaagtt cgtgtacctg gcgctgcagc
     1801 ggtacatccg gggcgagcag ctacgcctgc gcgagcagcg cgagccgccc gaggagcgcg
     1861 actccctgaa ggtgggcgcc tcgcccgccg accccggctg tagccccgga accgcgccgt
     1921 cccgggcgcc ggcggccacc ccggaggcct ccggccacgt gtacgagaac ctgctgcgcc
     1981 tctggccgtg agggccccga gtgcgcgcgc cccgattggg gctggagccg tgcgagaagg
     2041 cgggagccca gcaaggccgg ccctcgcgtt cctccaaagg actgtgttta ggactgtgca
     2101 gaccggcgcc cagcccagag
//
LOCUS       XR_004346936            2031 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tyrosine-protein phosphatase non-receptor
            type 11-like (LOC116744012), transcript variant X4, misc_RNA.
ACCESSION   XR_004346936
VERSION     XR_004346936.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2031
                     /gene="LOC116744012"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744012"
     misc_RNA        1..2031
                     /gene="LOC116744012"
                     /product="tyrosine-protein phosphatase non-receptor type
                     11-like, transcript variant X4"
                     /db_xref="GeneID:116744012"
ORIGIN      
        1 gcggcaggga gctcgacccc aggcccagaa agtgcccagg aagtgcctgg ctggtggcat
       61 ccctccttcc tccagggaga gccgcatggg agctctggtt ggccctgtgc aggtcacctg
      121 agcttctggg cctctctgaa ccagtacgtg gaccctgggg agccatggag gtcagaacgg
      181 agcctgtcct cccccagggc tcacgtctgg tgatgaagac atggggagac aggtggtttc
      241 atcccaacac cggcggggct gaggcggagc ggctgctcct gtccaagggc cagcacggga
      301 gcttcctggc aagacccagc aagagccgcc cagggggctt cacgctgtcc gtcaggcgcc
      361 gcgacgaggt gacccacatc aagatccaga acacaggcga ctactatgat ctgtacggag
      421 gggagaagtt cgcgacgctg gccgagctgg tgcagcacta cacaggccag cgcggggggc
      481 tgctccgaga gcgtggcggg gcccccgtgg agctctggca cccgctgagc tgccaggacc
      541 ccacgtcgga acggtggtac catgggcacc tgtctggcaa ggaggccgag aagctgctga
      601 tgcagaaggg gcgtccgggc agcttcctgg ttcgggagag tcagagcaaa cctggggact
      661 tcgtgctgtc agtgctcaca cagcagctgg acagggcgga ccgccaggca cgcgtcaccc
      721 atgtcatgat acacttccag ccagatggga agtacgatgt gggaggtggc gagaggtttg
      781 acaccctggg agatctggtg gaatgctaca ggaagaaccc tctggtggag aggtcgggga
      841 ccgtagtgca cctccagcag cccctcaaga ccacgagaat cagcgccaca agcattgaga
      901 gccgtgtgcg ggagctcaac gaggccatgg atgccagcga gaaggccaag cagggcttct
      961 gggaggagtt cgagatgctg cagcagcagg aatgccggct cctgtatccc cggaaagagg
     1021 gccagcggct ggagaacaag cccaagaacc gatacaagaa catcctcccc tttgatacca
     1081 cccgtgtcat cctgcgtgat gtggaggaca gcgtgcctgg agccgactac atcaacgcca
     1141 actacatcag gcaggcagtg gaccccacct cctttcagag tgacctagag gagaagccag
     1201 gccacggacc aggcaaggtg tacatcgcca cccagggctg tctgccaact acggcggctg
     1261 ccttctgggc catggtgcac caggagaaca cgcgtgtcat cgtcatgacc accagagagg
     1321 tggagcgagg ccggaacaag tgtttccgat actggccaga actgcacggc agccaagagt
     1381 atggccgcct gcgtgtgtgc aacgttgctg agcaccaggc ccagggctat tgtgtgaggg
     1441 agctgcaggt gtggagggca gaccaggagg agtcaccgcg cacagtggcg cactgccagt
     1501 acttcggctg gccggaccac ggagtcccgg ccgagcccgc cggcgtcctt ggcttcctgg
     1561 acgaggtgaa ccgggcccag agcggcatgc cgggggccgg acccatggta gtgcactgca
     1621 gcgccggcat cggacgcact ggcacaatca ttgtgattga catcttggtg gacgtcattc
     1681 gcaggcaggg gctggactgc gacatcgacg tccccaagac gatccagcat gtgcggcggc
     1741 agcgctcggg gatggtgcag accgaggcgc agtacaagtt cgtgtacctg gcgctgcagc
     1801 gcgcgagccg cccgaggagc gcgactccct gaaggtgggc gcctcgcccg ccgaccccgg
     1861 ctgtagcccc ggaaccgcgc cgtcccgggc gccggcggcc accccggagg cctccggcca
     1921 cgtgtacgag aacctgctgc gcctctggcc gtgagggccc cgagtgcgcg cgccccgatt
     1981 ggggctggag ccgtgcgaga aggcgggagc ccagcaaggc cggccctcgc g
//
LOCUS       XM_032613320            2368 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lymphocyte transmembrane adaptor 1
            (LAX1), mRNA.
ACCESSION   XM_032613320
VERSION     XM_032613320.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2368
                     /gene="LAX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744032"
     CDS             517..1656
                     /gene="LAX1"
                     /codon_start=1
                     /product="lymphocyte transmembrane adapter 1"
                     /protein_id="XP_032469211.1"
                     /db_xref="GeneID:116744032"
                     /translation="MDVTIPTRSEIRGRTSQPSTLQGTLGSPDTAKDHNSSIFSGFAG
                     LLAILLVVAVFCILWKWSKWKKRRVPYFQVTVMPLLTLPRPRQVAKNIYDLLPRRQEE
                     LGRHPSRSIRIFSTERLLSRNSDSPPSEHVPSQAREALHVHRAHTHAMGYAVGIYDNT
                     VGPQMYGNLTPSAHYVNVRASRDCQSTSSEDSRDYVNIPTAKEIAETLASNNSPPGNL
                     FILPSTKVLELTEEIDEGCGNASDCTSLGSPGTESSYPLNDGEGSSQTSDDYVNMAVL
                     DLETIQGKQPWGTFQCCRDYENVPPDPSGNQQREEKEATSSNTDHVEGRADGPETHIQ
                     PVMQSGSFLALKDYVAYQSSAQSENSQMKHGEEMSNEDSHDYKNV"
     misc_feature    601..1653
                     /gene="LAX1"
                     /note="Lymphocyte activation family X; Region: LAX;
                     pfam15681"
                     /db_xref="CDD:464799"
ORIGIN      
        1 aatcccccac caccttgccc catcttgaat cacgctcccc ccagaacaca gcgcgccggc
       61 cagcccaggg aacgtggtgc agacacgatt gcttctacct tattaagagc tgagcagcct
      121 ttcctgggcc ccatgcttca ttagcacgtt ggtggtgttg cttcctgtgg ctgactctcc
      181 gtttccattc tggcaaagtg tttgctctct tacctctgct ttggggggtg ggggaagatg
      241 agcttctcac ggagcctgtc tcggccttct cagcggtttc cccgtcagtg cccctcacat
      301 ccccctcaca aggcagaggc cctggcttcc ccctgagcct cgccgcagag caccacaccc
      361 agaggagctc gcccctcctg cagtcggcat cgcagctaca tccaggagtc agcaatttag
      421 gaagagccag ggaaagtggc agacaggctg gcaagcagat gacaattaag agaaggctta
      481 gaaggaggag ctgaagccag agacagtcct gggataatgg atgtcaccat accgacccgc
      541 tcagaaatca gagggaggac ctcacagccc agcactctgc agggaaccct cggcagccca
      601 gacacagcta aagaccacaa cagcagcatc ttttctgggt ttgcgggact ccttgccatc
      661 ctcctggttg tcgcagtttt ctgcatcctg tggaagtgga gcaaatggaa gaagcggcga
      721 gttccttact tccaagttac cgtcatgccc ttgctgactc tgcctcgacc cagacaagta
      781 gccaaaaata tttatgacct cttgccccga agacaagaag agctgggaag acatccgtca
      841 agaagtattc gtattttcag taccgagagg ctcctctcca gaaattctga cagccctccc
      901 tctgagcatg tgccctccca agcacgtgag gccctccatg tgcacagagc ccatactcat
      961 gccatggggt atgcagtggg catctatgac aataccgtgg ggccccagat gtatggaaac
     1021 ctcactccct cagcgcacta tgtcaatgtc agagcttcaa gagattgcca aagcacttct
     1081 tcagaggatt caagagatta tgtcaatatc cccacagcaa aggagattgc tgagacttta
     1141 gcttctaaca acagccctcc tgggaacctc ttcatcctcc caagtaccaa ggtgctggag
     1201 ttgactgaag aaatagatga gggctgtggg aacgccagtg actgcaccag tttggggtct
     1261 ccaggaactg agagcagtta tccactcaac gatggggaag ggtcttctca gacctcagat
     1321 gattatgtca acatggcagt gttggatctc gagaccatcc aagggaagca gccctgggga
     1381 acttttcagt gctgcagaga ttatgaaaat gtaccaccag atcccagtgg aaaccagcag
     1441 cgggaggaga aggaagcgac atcctcaaac acagaccatg tagagggcag ggcagatggt
     1501 ccagagaccc acatccaacc tgtcatgcag tcagggagtt tcctggcctt aaaggattat
     1561 gtggcctatc agtcatctgc acagagtgag aatagtcaga tgaaacatgg agaagagatg
     1621 tcaaatgaag actctcatga ctacaagaat gtgtgagctg ccaaggtagg aggtagggac
     1681 tttgagcagg ggcctgacac atggctcctt cctgatgaat taagacccag ccacccagct
     1741 ggaaagtcac atggagtggt ctgtcctgcc ggatccatag ccattacagg gtctagtgaa
     1801 gacccttgac cacccttgta tttcagtgga ttcgtttggt tacgctaaaa agaagctgaa
     1861 atgagtaggg agctaagagg ctcacaaaag cagaggtttg agaaagtcag aaagaaattc
     1921 ttctcaggca gggtgcggtg atctctcata ccaacttaag aatgctgaaa ctgccttata
     1981 ggtctgtgag gaggtcaaaa atggaagagt gctttagtac acagtggaaa catgaagtag
     2041 tctaaaatca ttaccttcac taataccagc aggctgcaaa gcaggaatac agattatttg
     2101 gtaatccagg cagaggccaa aaggaacaag gaagttgggt tggggtgggg ggacattttc
     2161 cgctctaaaa tgagtgtgga caaccaaacg ctggagaaaa tgcagaacaa caggaactct
     2221 cgctcattgc tgaagggatt gcaaggcata acatgcactc tggaaaactg tttggcagat
     2281 ttttttgttt gccttttttt ttgcggtacg cgggcctctc actgttgtgg cctctcccgt
     2341 tgcggagcac aggctccgga cgcacagg
//
LOCUS       XM_032613330            5080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus patched 2 (PTCH2), transcript variant X1,
            mRNA.
ACCESSION   XM_032613330
VERSION     XM_032613330.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5080
                     /gene="PTCH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 20 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744043"
     CDS             969..4589
                     /gene="PTCH2"
                     /codon_start=1
                     /product="protein patched homolog 2 isoform X1"
                     /protein_id="XP_032469221.1"
                     /db_xref="GeneID:116744043"
                     /translation="MARPPPLGELPPGYTPPARSAAPQILAGSLQAPLWLRAYFQGLL
                     FSLGCGIQRHCGKVLFLGLLAFGALALGLRVAIIETDLEQLWVEAGSRVSQELQYTKE
                     KLGEEAAYTSQMLIQTPRQEGENVLTPEALGLHLQAALTASKVQVSLYGKSWDLNKIC
                     YKSGVPLIENGMIERMIEKLFPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWTNLDP
                     EQLLEELGPFASLEGFRELLDKAQVGQAYVGRPCLHPDDLHCPSSAPNHHSRQAPNVA
                     QELSGGCHGFSHKFMHWQEELLLGGMARDPQGQLLRAEALQSTFLLMSPRQLYEHFRG
                     DYQTHDIGWSEEQASTVLQAWQRRFVQLAQEALPGNASQQIHAFSSTTLDDILHAFSE
                     VSAVRVVGGYLLMLAYACVTMLRWDCAQSQGAVGLAGVLLVALAVASGLGLCALLGIA
                     FNAATTQVLPFLALGIGVDDIFLLAHAFTEAPPGTPLQERTGECLQRTGTSVALTSIN
                     NMVAFFMAALVPIPALRAFSLQAAVVVGCNFVAVMLVFPAVLSLDLHRRHCQRLDVLC
                     CFSSPCSARVIQILPQELGDRTVPVGIAHLTATVQAFAHCEASSQHVVTILPPQAHLV
                     PPPSDPLASELFSPGGSTRDLLGQEEGTRQKAACKSLPCARWNLAHFARSQFAPLLLQ
                     SHTKAMVLVLFGALLGLSLYGSTLVQDGLALTDVVPRGTKEHAFLSAQLRYFSLYEVA
                     LVTQGGFDYAHSQRALFDLHQRFSSLKAVLPPPATQAPRTWLHYYRNWLQGIQAAFDQ
                     DWASGRITHHSYRNGSEDGALAYKLLIQTGDAQEPLDFSQLTTRKLVDKDGLIPPELF
                     YMGLTMWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIPAAQPLEFAQFPFLL
                     HGLQKTADFVETIEGARAACAEAGQAGVRAYPSGSPFLFWEQYLGLRRCFLLAVCILL
                     VCTFLVCALLLLNPWAASLIVLVLTVMTVELFGIMGFLGVKLSAIPVVILVASVGIGV
                     EFTVHVALGFLTSQGSRNLRAAWALEHTLAPVTDGAVSTLLGLLMLAGSNFDFIVRYF
                     FVVLTVLTLLGLLHGLVLLPVLLSILGPPPEVVQMYRESPEVLSPPAAQGGGLRWGVA
                     PTLPQSFARVTTSMTVALRPPPLPGAYIHPASEEPTWSPAATPAASGSSNLSSRGPCP
                     AT"
     misc_feature    1020..4394
                     /gene="PTCH2"
                     /note="The Eukaryotic (Putative) Sterol Transporter (EST)
                     Family; Region: 2A060602; TIGR00918"
                     /db_xref="CDD:273338"
ORIGIN      
        1 tcacgtgcaa taataaatat ataaattgag tgttataagg cgcacaaaga agcaattatc
       61 cgttaggagg ggtggtgtga ctcaaggaag acttcaaagg cggatggttg atgcatgttc
      121 agttttgggt ctcttttttt tttttcccag gccacgctga gaggcttaca gtatcttagt
      181 tccccgacca gggattgaac ccgtgccctc ggcagtgaaa gcgcggagtc ctaaccactg
      241 gacagccagg gaattccctc atgctccatt ttgaaggtgg cctgccaaaa caagagggcc
      301 acgtctgtca tcagattcgc gttttagaga gatgactggc ctcagtggag agagtggact
      361 gacgtgggag agaatggagg cagagagttg tgaaaagcag tctttgggtc ttggttgggt
      421 cggccagcag ataccttttc tcagcattgg tctctcctga cttaacattt ggccaacgca
      481 tcgcctctcc gggttctccc tccctccttc tccccgaggg caggcaggcg ggcggggaag
      541 cgaggagagg ggtggccctg cctgggtggt ctcctgcccc gccccccgcg gcgccgttgc
      601 ctagcaacgg atccggccgc gcagctccgg gtaatttgtc ggcgactaag ccaaagggag
      661 ggcgtagccc cagcctttcc ctttttcttg gactacagac gcctcctcgg cacagcggtc
      721 gccacctcga gccgcgccgg gcgtcgcgta gctgttcctg cacgcgggag ccactccggt
      781 tccgcgcccc gggcccgcac cgccctgcac tcctacagct cacgaacgcc actgtacacc
      841 cgtacccgcg gctgagcggc cccactgaat tccgacgcgg gacctcgcgg tacgcgggac
      901 caggccagcc tatgggggcg cccagataac gcgggttggg ggcgcccagg ccccccatcc
      961 ccgccagcat ggctcggccg ccaccccttg gggagctgcc cccgggctac acacccccag
     1021 ctcgatctgc agcaccccag atcctagctg ggagccttca ggctccactc tggcttcgtg
     1081 cttacttcca gggcctgctc ttctctctgg gctgtgggat ccagagacac tgtggcaaag
     1141 tgctcttcct gggacttttg gcctttgggg ccctagcgtt gggtctccgc gtggccatca
     1201 ttgaaacaga cctagaacag ctctgggtgg aagcgggcag ccgggtgagc caagagctgc
     1261 aatacaccaa ggagaagctg ggggaggagg ctgcatacac ctcccagatg ttgatacaga
     1321 ccccgcgcca ggagggggag aacgtcctca cacctgaggc acttggcctc caccttcagg
     1381 cagccctcac cgccagtaaa gtgcaagtat cactctatgg aaagtcctgg gatttgaaca
     1441 aaatctgcta caagtcagga gttcccctaa ttgaaaatgg aatgattgag cggatgattg
     1501 agaagctgtt tccctgcgtg atcctcaccc ccctcgactg cttctgggaa ggagccaaac
     1561 tccaaggggg ctctgcctac ttgccgggcc gccctgacat ccagtggacc aacctggatc
     1621 cagagcaact gctggaggag ctgggcccct ttgcctccct tgagggcttc cgggagctgc
     1681 tagacaaggc acaggtgggc caggcctacg tggggcggcc ctgtctgcac cctgacgacc
     1741 ttcactgccc atctagtgcc cctaaccatc acagcaggca ggctcccaat gtggctcagg
     1801 agttgagcgg gggctgccat ggcttctccc acaagttcat gcactggcag gaggaactgc
     1861 tgctgggagg catggccaga gacccccaag gacagctgct gagggcagag gccctgcaga
     1921 gcaccttcct gctcatgagt ccccgccagc tctacgagca cttccggggc gactaccaga
     1981 cacacgacat cggctggagc gaggagcagg ccagcacggt gctgcaggcc tggcagcggc
     2041 gcttcgtgca gctggcgcag gaggccctgc ctgggaacgc gtcccagcag atccacgcct
     2101 tctcctccac caccctggat gacatcctgc acgccttctc tgaagtcagc gctgtccgtg
     2161 tggtgggagg ctacctgctc atgctggcct acgcctgcgt gacaatgctg cggtgggact
     2221 gtgctcagtc ccagggtgcc gtgggcctcg ccggggtgct gctggtggcc ctagcggtgg
     2281 cctcgggcct cgggctctgt gccctgctcg gcatcgcctt caatgccgcc actacccagg
     2341 tgctgccctt cttggcactg ggcattggcg tggatgacat attcctgctg gcacatgcct
     2401 tcacagaggc tccacctggc acccctctcc aggagcgcac aggtgagtgt ctgcagcgca
     2461 caggcaccag cgttgcactc acgtccatca acaacatggt cgccttcttc atggctgccc
     2521 tagttcccat ccctgcactg cgggccttct ccttgcaggc ggcagtagtg gttggctgca
     2581 actttgtagc cgtgatgctt gtcttcccag cggtcctcag cctggacctg caccggcgcc
     2641 actgccagcg ccttgatgtg ctctgctgct tctctagccc ctgctctgct cgggtgattc
     2701 agattctgcc ccaggagctg ggggatagga cagtaccagt gggcattgct cacctgactg
     2761 ccaccgttca ggcatttgcg cactgtgaag ccagcagcca gcatgtggtc accatcctgc
     2821 ctcctcaagc ccacctggtg cccccacctt ctgacccact ggcctctgag ctcttcagcc
     2881 caggagggtc aacacgggac cttctaggcc aggaggaggg gacaaggcag aaggcagcct
     2941 gcaagtccct gccctgcgcc cgctggaatc ttgcccattt cgcccgctct cagtttgcac
     3001 ccttgctgct ccagtcccac accaaggcca tggtgctggt actttttggg gctcttctgg
     3061 gcctgagcct ctatggatcg accttggtgc aggatgggct ggccctgaca gatgtggtgc
     3121 ctcggggcac caaggagcat gccttcctga gcgcccagct caggtacttc tctctgtacg
     3181 aggtggccct ggtgacacag ggtggctttg actacgccca ctcccaacgc gccctctttg
     3241 atctgcacca gcgcttcagt tccctcaagg cagtgctgcc cccaccggcc acgcaggcac
     3301 cccgcacctg gctgcactat taccgcaact ggctacaggg aatccaggct gcgtttgacc
     3361 aggactgggc ttctgggcgc atcacccacc actcataccg caatggctct gaggatgggg
     3421 ccctagccta caagctgctc atccagaccg gggatgccca ggagcctctt gatttcagcc
     3481 agctgaccac aaggaagctg gtggacaagg acgggctgat accacctgag ctcttctaca
     3541 tggggctgac catgtgggtg agcagtgacc ctctgggtct ggcagcctca caagccaact
     3601 tctacccccc acctcccgag tggctgcatg acaagtacga caccaccggg gagaaccttc
     3661 gcatcccggc ggcccagccc ctggagtttg cccagttccc ctttctactg cacggactcc
     3721 agaagactgc agacttcgtg gagaccattg agggggcccg ggcagcgtgt gccgaggcag
     3781 gccaggctgg ggtgcgcgcc taccccagcg gctccccctt cctcttctgg gagcagtatc
     3841 tgggcctgcg gcgctgtttc ctgctggcag tctgcatcct gctggtgtgc actttcctcg
     3901 tctgcgccct gctgctgctc aacccctggg cagcttccct catagtgctg gtcctgacag
     3961 tgatgaccgt ggagctcttt ggcatcatgg gtttcctggg cgtcaagctg agcgccatcc
     4021 ccgtggtgat ccttgtggcg tctgtaggca ttggtgtcga gttcacggtc catgtggctc
     4081 tgggcttcct gacctcccag ggtagccgga acctccgggc tgcctgggcc ctagagcaca
     4141 cactggcccc ggtgaccgat ggggccgtct ccacgttgct gggtctgctc atgcttgctg
     4201 gttccaactt tgacttcatt gtaaggtact tcttcgtggt gctgacagta ctcacactcc
     4261 taggcctcct ccatgggctc gtgctgctgc ctgtgctgct gtccatcctg ggccccccac
     4321 cagaggtggt acagatgtac agggagagcc cggaggtcct gagcccacca gctgcacaag
     4381 gaggagggct caggtggggg gtagccccca cccttcccca gagctttgcc agagtgacta
     4441 cctccatgac cgtggccctc cgcccacccc cactgcctgg tgcctacatc cacccagcct
     4501 ctgaagagcc tacttggtcc cctgctgcca caccagctgc cagtggctcc agcaacctca
     4561 gttctagggg accatgtcca gccacctgat gaaagagcag ctgaagcgtg gagaccctgt
     4621 tcaggccaca tgaaggcact gggaagccat ggggggttat tgaatgcagg gcggactcct
     4681 ggagagccct gctgctgctg ctgtctgcct ccatcccctc ccagacccag ccatcacaga
     4741 cctccctgag atccacacta aaccaccacc ctctaggctg tgagcagcgt tgcacacccg
     4801 ggtgctccgt gtccgtgccc gtgactgggt ggggtgaaag ccagcaagca cttcaggctg
     4861 cagtgcagcc ctgtcccccc tcccaccccg ccctgctgcc cccagcaaac caagcctgag
     4921 ggatcctcta gcacccttct ccagtcctgg tcccccgctg cttgctgact tctgggtagg
     4981 ctctctgtat ccctgcccac ctcttaccac ataaattatt tatatggaga cgtttatttt
     5041 tgtagtttgt atagatgtta gctatgctga aagttttatt
//
LOCUS       XM_032613338            4686 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus patched 2 (PTCH2), transcript variant X2,
            mRNA.
ACCESSION   XM_032613338
VERSION     XM_032613338.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4686
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4686
                     /gene="PTCH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 20 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744043"
     CDS             575..4195
                     /gene="PTCH2"
                     /codon_start=1
                     /product="protein patched homolog 2 isoform X1"
                     /protein_id="XP_032469229.1"
                     /db_xref="GeneID:116744043"
                     /translation="MARPPPLGELPPGYTPPARSAAPQILAGSLQAPLWLRAYFQGLL
                     FSLGCGIQRHCGKVLFLGLLAFGALALGLRVAIIETDLEQLWVEAGSRVSQELQYTKE
                     KLGEEAAYTSQMLIQTPRQEGENVLTPEALGLHLQAALTASKVQVSLYGKSWDLNKIC
                     YKSGVPLIENGMIERMIEKLFPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWTNLDP
                     EQLLEELGPFASLEGFRELLDKAQVGQAYVGRPCLHPDDLHCPSSAPNHHSRQAPNVA
                     QELSGGCHGFSHKFMHWQEELLLGGMARDPQGQLLRAEALQSTFLLMSPRQLYEHFRG
                     DYQTHDIGWSEEQASTVLQAWQRRFVQLAQEALPGNASQQIHAFSSTTLDDILHAFSE
                     VSAVRVVGGYLLMLAYACVTMLRWDCAQSQGAVGLAGVLLVALAVASGLGLCALLGIA
                     FNAATTQVLPFLALGIGVDDIFLLAHAFTEAPPGTPLQERTGECLQRTGTSVALTSIN
                     NMVAFFMAALVPIPALRAFSLQAAVVVGCNFVAVMLVFPAVLSLDLHRRHCQRLDVLC
                     CFSSPCSARVIQILPQELGDRTVPVGIAHLTATVQAFAHCEASSQHVVTILPPQAHLV
                     PPPSDPLASELFSPGGSTRDLLGQEEGTRQKAACKSLPCARWNLAHFARSQFAPLLLQ
                     SHTKAMVLVLFGALLGLSLYGSTLVQDGLALTDVVPRGTKEHAFLSAQLRYFSLYEVA
                     LVTQGGFDYAHSQRALFDLHQRFSSLKAVLPPPATQAPRTWLHYYRNWLQGIQAAFDQ
                     DWASGRITHHSYRNGSEDGALAYKLLIQTGDAQEPLDFSQLTTRKLVDKDGLIPPELF
                     YMGLTMWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIPAAQPLEFAQFPFLL
                     HGLQKTADFVETIEGARAACAEAGQAGVRAYPSGSPFLFWEQYLGLRRCFLLAVCILL
                     VCTFLVCALLLLNPWAASLIVLVLTVMTVELFGIMGFLGVKLSAIPVVILVASVGIGV
                     EFTVHVALGFLTSQGSRNLRAAWALEHTLAPVTDGAVSTLLGLLMLAGSNFDFIVRYF
                     FVVLTVLTLLGLLHGLVLLPVLLSILGPPPEVVQMYRESPEVLSPPAAQGGGLRWGVA
                     PTLPQSFARVTTSMTVALRPPPLPGAYIHPASEEPTWSPAATPAASGSSNLSSRGPCP
                     AT"
     misc_feature    626..4000
                     /gene="PTCH2"
                     /note="The Eukaryotic (Putative) Sterol Transporter (EST)
                     Family; Region: 2A060602; TIGR00918"
                     /db_xref="CDD:273338"
ORIGIN      
        1 tcacgtgcaa taataaatat ataaattgag tgttataagg cgcacaaaga agcaattatc
       61 cgttaggagg ggtggtgtga ctcaaggaag acttcaaagg cggatggttg atgcatgttc
      121 agttttgggt ctcttttttt tttttcccag gccacgctga gaggcttaca gtatcttagt
      181 tccccgacca gggattgaac ccgtgccctc ggcagtgaaa gcgcggagtc ctaaccactg
      241 gacagccagg gaattccctc atgctccatt ttgaaggtgg cctgccaaaa caagagggcc
      301 acgtacgcct cctcggcaca gcggtcgcca cctcgagccg cgccgggcgt cgcgtagctg
      361 ttcctgcacg cgggagccac tccggttccg cgccccgggc ccgcaccgcc ctgcactcct
      421 acagctcacg aacgccactg tacacccgta cccgcggctg agcggcccca ctgaattccg
      481 acgcgggacc tcgcggtacg cgggaccagg ccagcctatg ggggcgccca gataacgcgg
      541 gttgggggcg cccaggcccc ccatccccgc cagcatggct cggccgccac cccttgggga
      601 gctgcccccg ggctacacac ccccagctcg atctgcagca ccccagatcc tagctgggag
      661 ccttcaggct ccactctggc ttcgtgctta cttccagggc ctgctcttct ctctgggctg
      721 tgggatccag agacactgtg gcaaagtgct cttcctggga cttttggcct ttggggccct
      781 agcgttgggt ctccgcgtgg ccatcattga aacagaccta gaacagctct gggtggaagc
      841 gggcagccgg gtgagccaag agctgcaata caccaaggag aagctggggg aggaggctgc
      901 atacacctcc cagatgttga tacagacccc gcgccaggag ggggagaacg tcctcacacc
      961 tgaggcactt ggcctccacc ttcaggcagc cctcaccgcc agtaaagtgc aagtatcact
     1021 ctatggaaag tcctgggatt tgaacaaaat ctgctacaag tcaggagttc ccctaattga
     1081 aaatggaatg attgagcgga tgattgagaa gctgtttccc tgcgtgatcc tcacccccct
     1141 cgactgcttc tgggaaggag ccaaactcca agggggctct gcctacttgc cgggccgccc
     1201 tgacatccag tggaccaacc tggatccaga gcaactgctg gaggagctgg gcccctttgc
     1261 ctcccttgag ggcttccggg agctgctaga caaggcacag gtgggccagg cctacgtggg
     1321 gcggccctgt ctgcaccctg acgaccttca ctgcccatct agtgccccta accatcacag
     1381 caggcaggct cccaatgtgg ctcaggagtt gagcgggggc tgccatggct tctcccacaa
     1441 gttcatgcac tggcaggagg aactgctgct gggaggcatg gccagagacc cccaaggaca
     1501 gctgctgagg gcagaggccc tgcagagcac cttcctgctc atgagtcccc gccagctcta
     1561 cgagcacttc cggggcgact accagacaca cgacatcggc tggagcgagg agcaggccag
     1621 cacggtgctg caggcctggc agcggcgctt cgtgcagctg gcgcaggagg ccctgcctgg
     1681 gaacgcgtcc cagcagatcc acgccttctc ctccaccacc ctggatgaca tcctgcacgc
     1741 cttctctgaa gtcagcgctg tccgtgtggt gggaggctac ctgctcatgc tggcctacgc
     1801 ctgcgtgaca atgctgcggt gggactgtgc tcagtcccag ggtgccgtgg gcctcgccgg
     1861 ggtgctgctg gtggccctag cggtggcctc gggcctcggg ctctgtgccc tgctcggcat
     1921 cgccttcaat gccgccacta cccaggtgct gcccttcttg gcactgggca ttggcgtgga
     1981 tgacatattc ctgctggcac atgccttcac agaggctcca cctggcaccc ctctccagga
     2041 gcgcacaggt gagtgtctgc agcgcacagg caccagcgtt gcactcacgt ccatcaacaa
     2101 catggtcgcc ttcttcatgg ctgccctagt tcccatccct gcactgcggg ccttctcctt
     2161 gcaggcggca gtagtggttg gctgcaactt tgtagccgtg atgcttgtct tcccagcggt
     2221 cctcagcctg gacctgcacc ggcgccactg ccagcgcctt gatgtgctct gctgcttctc
     2281 tagcccctgc tctgctcggg tgattcagat tctgccccag gagctggggg ataggacagt
     2341 accagtgggc attgctcacc tgactgccac cgttcaggca tttgcgcact gtgaagccag
     2401 cagccagcat gtggtcacca tcctgcctcc tcaagcccac ctggtgcccc caccttctga
     2461 cccactggcc tctgagctct tcagcccagg agggtcaaca cgggaccttc taggccagga
     2521 ggaggggaca aggcagaagg cagcctgcaa gtccctgccc tgcgcccgct ggaatcttgc
     2581 ccatttcgcc cgctctcagt ttgcaccctt gctgctccag tcccacacca aggccatggt
     2641 gctggtactt tttggggctc ttctgggcct gagcctctat ggatcgacct tggtgcagga
     2701 tgggctggcc ctgacagatg tggtgcctcg gggcaccaag gagcatgcct tcctgagcgc
     2761 ccagctcagg tacttctctc tgtacgaggt ggccctggtg acacagggtg gctttgacta
     2821 cgcccactcc caacgcgccc tctttgatct gcaccagcgc ttcagttccc tcaaggcagt
     2881 gctgccccca ccggccacgc aggcaccccg cacctggctg cactattacc gcaactggct
     2941 acagggaatc caggctgcgt ttgaccagga ctgggcttct gggcgcatca cccaccactc
     3001 ataccgcaat ggctctgagg atggggccct agcctacaag ctgctcatcc agaccgggga
     3061 tgcccaggag cctcttgatt tcagccagct gaccacaagg aagctggtgg acaaggacgg
     3121 gctgatacca cctgagctct tctacatggg gctgaccatg tgggtgagca gtgaccctct
     3181 gggtctggca gcctcacaag ccaacttcta ccccccacct cccgagtggc tgcatgacaa
     3241 gtacgacacc accggggaga accttcgcat cccggcggcc cagcccctgg agtttgccca
     3301 gttccccttt ctactgcacg gactccagaa gactgcagac ttcgtggaga ccattgaggg
     3361 ggcccgggca gcgtgtgccg aggcaggcca ggctggggtg cgcgcctacc ccagcggctc
     3421 ccccttcctc ttctgggagc agtatctggg cctgcggcgc tgtttcctgc tggcagtctg
     3481 catcctgctg gtgtgcactt tcctcgtctg cgccctgctg ctgctcaacc cctgggcagc
     3541 ttccctcata gtgctggtcc tgacagtgat gaccgtggag ctctttggca tcatgggttt
     3601 cctgggcgtc aagctgagcg ccatccccgt ggtgatcctt gtggcgtctg taggcattgg
     3661 tgtcgagttc acggtccatg tggctctggg cttcctgacc tcccagggta gccggaacct
     3721 ccgggctgcc tgggccctag agcacacact ggccccggtg accgatgggg ccgtctccac
     3781 gttgctgggt ctgctcatgc ttgctggttc caactttgac ttcattgtaa ggtacttctt
     3841 cgtggtgctg acagtactca cactcctagg cctcctccat gggctcgtgc tgctgcctgt
     3901 gctgctgtcc atcctgggcc ccccaccaga ggtggtacag atgtacaggg agagcccgga
     3961 ggtcctgagc ccaccagctg cacaaggagg agggctcagg tggggggtag cccccaccct
     4021 tccccagagc tttgccagag tgactacctc catgaccgtg gccctccgcc cacccccact
     4081 gcctggtgcc tacatccacc cagcctctga agagcctact tggtcccctg ctgccacacc
     4141 agctgccagt ggctccagca acctcagttc taggggacca tgtccagcca cctgatgaaa
     4201 gagcagctga agcgtggaga ccctgttcag gccacatgaa ggcactggga agccatgggg
     4261 ggttattgaa tgcagggcgg actcctggag agccctgctg ctgctgctgt ctgcctccat
     4321 cccctcccag acccagccat cacagacctc cctgagatcc acactaaacc accaccctct
     4381 aggctgtgag cagcgttgca cacccgggtg ctccgtgtcc gtgcccgtga ctgggtgggg
     4441 tgaaagccag caagcacttc aggctgcagt gcagccctgt cccccctccc accccgccct
     4501 gctgccccca gcaaaccaag cctgagggat cctctagcac ccttctccag tcctggtccc
     4561 ccgctgcttg ctgacttctg ggtaggctct ctgtatccct gcccacctct taccacataa
     4621 attatttata tggagacgtt tatttttgta gtttgtatag atgttagcta tgctgaaagt
     4681 tttatt
//
LOCUS       XM_032613347            4993 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus patched 2 (PTCH2), transcript variant X3,
            mRNA.
ACCESSION   XM_032613347
VERSION     XM_032613347.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4993
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4993
                     /gene="PTCH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744043"
     CDS             969..4502
                     /gene="PTCH2"
                     /codon_start=1
                     /product="protein patched homolog 2 isoform X2"
                     /protein_id="XP_032469238.1"
                     /db_xref="GeneID:116744043"
                     /translation="MARPPPLGELPPGYTPPARSAAPQILAGSLQAPLWLRAYFQGLL
                     FSLGCGIQRHCGKVLFLGLLAFGALALGLRVAIIETDLEQLWVEAGSRVSQELQYTKE
                     KLGEEAAYTSQMLIQTPRQEGENVLTPEALGLHLQAALTASKVQVSLYGKSWDLNKIC
                     YKSGVPLIENGMIERMIEKLFPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWTNLDP
                     EQLLEELGPFASLEGFRELLDKAQAPNVAQELSGGCHGFSHKFMHWQEELLLGGMARD
                     PQGQLLRAEALQSTFLLMSPRQLYEHFRGDYQTHDIGWSEEQASTVLQAWQRRFVQLA
                     QEALPGNASQQIHAFSSTTLDDILHAFSEVSAVRVVGGYLLMLAYACVTMLRWDCAQS
                     QGAVGLAGVLLVALAVASGLGLCALLGIAFNAATTQVLPFLALGIGVDDIFLLAHAFT
                     EAPPGTPLQERTGECLQRTGTSVALTSINNMVAFFMAALVPIPALRAFSLQAAVVVGC
                     NFVAVMLVFPAVLSLDLHRRHCQRLDVLCCFSSPCSARVIQILPQELGDRTVPVGIAH
                     LTATVQAFAHCEASSQHVVTILPPQAHLVPPPSDPLASELFSPGGSTRDLLGQEEGTR
                     QKAACKSLPCARWNLAHFARSQFAPLLLQSHTKAMVLVLFGALLGLSLYGSTLVQDGL
                     ALTDVVPRGTKEHAFLSAQLRYFSLYEVALVTQGGFDYAHSQRALFDLHQRFSSLKAV
                     LPPPATQAPRTWLHYYRNWLQGIQAAFDQDWASGRITHHSYRNGSEDGALAYKLLIQT
                     GDAQEPLDFSQLTTRKLVDKDGLIPPELFYMGLTMWVSSDPLGLAASQANFYPPPPEW
                     LHDKYDTTGENLRIPAAQPLEFAQFPFLLHGLQKTADFVETIEGARAACAEAGQAGVR
                     AYPSGSPFLFWEQYLGLRRCFLLAVCILLVCTFLVCALLLLNPWAASLIVLVLTVMTV
                     ELFGIMGFLGVKLSAIPVVILVASVGIGVEFTVHVALGFLTSQGSRNLRAAWALEHTL
                     APVTDGAVSTLLGLLMLAGSNFDFIVRYFFVVLTVLTLLGLLHGLVLLPVLLSILGPP
                     PEVVQMYRESPEVLSPPAAQGGGLRWGVAPTLPQSFARVTTSMTVALRPPPLPGAYIH
                     PASEEPTWSPAATPAASGSSNLSSRGPCPAT"
     misc_feature    1020..4307
                     /gene="PTCH2"
                     /note="The Eukaryotic (Putative) Sterol Transporter (EST)
                     Family; Region: 2A060602; TIGR00918"
                     /db_xref="CDD:273338"
ORIGIN      
        1 tcacgtgcaa taataaatat ataaattgag tgttataagg cgcacaaaga agcaattatc
       61 cgttaggagg ggtggtgtga ctcaaggaag acttcaaagg cggatggttg atgcatgttc
      121 agttttgggt ctcttttttt tttttcccag gccacgctga gaggcttaca gtatcttagt
      181 tccccgacca gggattgaac ccgtgccctc ggcagtgaaa gcgcggagtc ctaaccactg
      241 gacagccagg gaattccctc atgctccatt ttgaaggtgg cctgccaaaa caagagggcc
      301 acgtctgtca tcagattcgc gttttagaga gatgactggc ctcagtggag agagtggact
      361 gacgtgggag agaatggagg cagagagttg tgaaaagcag tctttgggtc ttggttgggt
      421 cggccagcag ataccttttc tcagcattgg tctctcctga cttaacattt ggccaacgca
      481 tcgcctctcc gggttctccc tccctccttc tccccgaggg caggcaggcg ggcggggaag
      541 cgaggagagg ggtggccctg cctgggtggt ctcctgcccc gccccccgcg gcgccgttgc
      601 ctagcaacgg atccggccgc gcagctccgg gtaatttgtc ggcgactaag ccaaagggag
      661 ggcgtagccc cagcctttcc ctttttcttg gactacagac gcctcctcgg cacagcggtc
      721 gccacctcga gccgcgccgg gcgtcgcgta gctgttcctg cacgcgggag ccactccggt
      781 tccgcgcccc gggcccgcac cgccctgcac tcctacagct cacgaacgcc actgtacacc
      841 cgtacccgcg gctgagcggc cccactgaat tccgacgcgg gacctcgcgg tacgcgggac
      901 caggccagcc tatgggggcg cccagataac gcgggttggg ggcgcccagg ccccccatcc
      961 ccgccagcat ggctcggccg ccaccccttg gggagctgcc cccgggctac acacccccag
     1021 ctcgatctgc agcaccccag atcctagctg ggagccttca ggctccactc tggcttcgtg
     1081 cttacttcca gggcctgctc ttctctctgg gctgtgggat ccagagacac tgtggcaaag
     1141 tgctcttcct gggacttttg gcctttgggg ccctagcgtt gggtctccgc gtggccatca
     1201 ttgaaacaga cctagaacag ctctgggtgg aagcgggcag ccgggtgagc caagagctgc
     1261 aatacaccaa ggagaagctg ggggaggagg ctgcatacac ctcccagatg ttgatacaga
     1321 ccccgcgcca ggagggggag aacgtcctca cacctgaggc acttggcctc caccttcagg
     1381 cagccctcac cgccagtaaa gtgcaagtat cactctatgg aaagtcctgg gatttgaaca
     1441 aaatctgcta caagtcagga gttcccctaa ttgaaaatgg aatgattgag cggatgattg
     1501 agaagctgtt tccctgcgtg atcctcaccc ccctcgactg cttctgggaa ggagccaaac
     1561 tccaaggggg ctctgcctac ttgccgggcc gccctgacat ccagtggacc aacctggatc
     1621 cagagcaact gctggaggag ctgggcccct ttgcctccct tgagggcttc cgggagctgc
     1681 tagacaaggc acaggctccc aatgtggctc aggagttgag cgggggctgc catggcttct
     1741 cccacaagtt catgcactgg caggaggaac tgctgctggg aggcatggcc agagaccccc
     1801 aaggacagct gctgagggca gaggccctgc agagcacctt cctgctcatg agtccccgcc
     1861 agctctacga gcacttccgg ggcgactacc agacacacga catcggctgg agcgaggagc
     1921 aggccagcac ggtgctgcag gcctggcagc ggcgcttcgt gcagctggcg caggaggccc
     1981 tgcctgggaa cgcgtcccag cagatccacg ccttctcctc caccaccctg gatgacatcc
     2041 tgcacgcctt ctctgaagtc agcgctgtcc gtgtggtggg aggctacctg ctcatgctgg
     2101 cctacgcctg cgtgacaatg ctgcggtggg actgtgctca gtcccagggt gccgtgggcc
     2161 tcgccggggt gctgctggtg gccctagcgg tggcctcggg cctcgggctc tgtgccctgc
     2221 tcggcatcgc cttcaatgcc gccactaccc aggtgctgcc cttcttggca ctgggcattg
     2281 gcgtggatga catattcctg ctggcacatg ccttcacaga ggctccacct ggcacccctc
     2341 tccaggagcg cacaggtgag tgtctgcagc gcacaggcac cagcgttgca ctcacgtcca
     2401 tcaacaacat ggtcgccttc ttcatggctg ccctagttcc catccctgca ctgcgggcct
     2461 tctccttgca ggcggcagta gtggttggct gcaactttgt agccgtgatg cttgtcttcc
     2521 cagcggtcct cagcctggac ctgcaccggc gccactgcca gcgccttgat gtgctctgct
     2581 gcttctctag cccctgctct gctcgggtga ttcagattct gccccaggag ctgggggata
     2641 ggacagtacc agtgggcatt gctcacctga ctgccaccgt tcaggcattt gcgcactgtg
     2701 aagccagcag ccagcatgtg gtcaccatcc tgcctcctca agcccacctg gtgcccccac
     2761 cttctgaccc actggcctct gagctcttca gcccaggagg gtcaacacgg gaccttctag
     2821 gccaggagga ggggacaagg cagaaggcag cctgcaagtc cctgccctgc gcccgctgga
     2881 atcttgccca tttcgcccgc tctcagtttg cacccttgct gctccagtcc cacaccaagg
     2941 ccatggtgct ggtacttttt ggggctcttc tgggcctgag cctctatgga tcgaccttgg
     3001 tgcaggatgg gctggccctg acagatgtgg tgcctcgggg caccaaggag catgccttcc
     3061 tgagcgccca gctcaggtac ttctctctgt acgaggtggc cctggtgaca cagggtggct
     3121 ttgactacgc ccactcccaa cgcgccctct ttgatctgca ccagcgcttc agttccctca
     3181 aggcagtgct gcccccaccg gccacgcagg caccccgcac ctggctgcac tattaccgca
     3241 actggctaca gggaatccag gctgcgtttg accaggactg ggcttctggg cgcatcaccc
     3301 accactcata ccgcaatggc tctgaggatg gggccctagc ctacaagctg ctcatccaga
     3361 ccggggatgc ccaggagcct cttgatttca gccagctgac cacaaggaag ctggtggaca
     3421 aggacgggct gataccacct gagctcttct acatggggct gaccatgtgg gtgagcagtg
     3481 accctctggg tctggcagcc tcacaagcca acttctaccc cccacctccc gagtggctgc
     3541 atgacaagta cgacaccacc ggggagaacc ttcgcatccc ggcggcccag cccctggagt
     3601 ttgcccagtt cccctttcta ctgcacggac tccagaagac tgcagacttc gtggagacca
     3661 ttgagggggc ccgggcagcg tgtgccgagg caggccaggc tggggtgcgc gcctacccca
     3721 gcggctcccc cttcctcttc tgggagcagt atctgggcct gcggcgctgt ttcctgctgg
     3781 cagtctgcat cctgctggtg tgcactttcc tcgtctgcgc cctgctgctg ctcaacccct
     3841 gggcagcttc cctcatagtg ctggtcctga cagtgatgac cgtggagctc tttggcatca
     3901 tgggtttcct gggcgtcaag ctgagcgcca tccccgtggt gatccttgtg gcgtctgtag
     3961 gcattggtgt cgagttcacg gtccatgtgg ctctgggctt cctgacctcc cagggtagcc
     4021 ggaacctccg ggctgcctgg gccctagagc acacactggc cccggtgacc gatggggccg
     4081 tctccacgtt gctgggtctg ctcatgcttg ctggttccaa ctttgacttc attgtaaggt
     4141 acttcttcgt ggtgctgaca gtactcacac tcctaggcct cctccatggg ctcgtgctgc
     4201 tgcctgtgct gctgtccatc ctgggccccc caccagaggt ggtacagatg tacagggaga
     4261 gcccggaggt cctgagccca ccagctgcac aaggaggagg gctcaggtgg ggggtagccc
     4321 ccacccttcc ccagagcttt gccagagtga ctacctccat gaccgtggcc ctccgcccac
     4381 ccccactgcc tggtgcctac atccacccag cctctgaaga gcctacttgg tcccctgctg
     4441 ccacaccagc tgccagtggc tccagcaacc tcagttctag gggaccatgt ccagccacct
     4501 gatgaaagag cagctgaagc gtggagaccc tgttcaggcc acatgaaggc actgggaagc
     4561 catggggggt tattgaatgc agggcggact cctggagagc cctgctgctg ctgctgtctg
     4621 cctccatccc ctcccagacc cagccatcac agacctccct gagatccaca ctaaaccacc
     4681 accctctagg ctgtgagcag cgttgcacac ccgggtgctc cgtgtccgtg cccgtgactg
     4741 ggtggggtga aagccagcaa gcacttcagg ctgcagtgca gccctgtccc ccctcccacc
     4801 ccgccctgct gcccccagca aaccaagcct gagggatcct ctagcaccct tctccagtcc
     4861 tggtcccccg ctgcttgctg acttctgggt aggctctctg tatccctgcc cacctcttac
     4921 cacataaatt atttatatgg agacgtttat ttttgtagtt tgtatagatg ttagctatgc
     4981 tgaaagtttt att
//
LOCUS       XM_032613353            4887 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus patched 2 (PTCH2), transcript variant X4,
            mRNA.
ACCESSION   XM_032613353
VERSION     XM_032613353.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4887
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4887
                     /gene="PTCH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744043"
     CDS             1115..4396
                     /gene="PTCH2"
                     /codon_start=1
                     /product="protein patched homolog 2 isoform X3"
                     /protein_id="XP_032469244.1"
                     /db_xref="GeneID:116744043"
                     /translation="MLIQTPRQEGENVLTPEALGLHLQAALTASKVQVSLYGKSWDLN
                     KICYKSGVPLIENGMIERMIEKLFPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWTN
                     LDPEQLLEELGPFASLEGFRELLDKAQVGQAYVGRPCLHPDDLHCPSSAPNHHSRQAP
                     NVAQELSGGCHGFSHKFMHWQEELLLGGMARDPQGQLLRAEALQSTFLLMSPRQLYEH
                     FRGDYQTHDIGWSEEQASTVLQAWQRRFVQLAQEALPGNASQQIHAFSSTTLDDILHA
                     FSEVSAVRVVGGYLLMLAYACVTMLRWDCAQSQGAVGLAGVLLVALAVASGLGLCALL
                     GIAFNAATTQVLPFLALGIGVDDIFLLAHAFTEAPPGTPLQERTGECLQRTGTSVALT
                     SINNMVAFFMAALVPIPALRAFSLQAAVVVGCNFVAVMLVFPAVLSLDLHRRHCQRLD
                     VLCCFSSPCSARVIQILPQELGDRTVPVGIAHLTATVQAFAHCEASSQHVVTILPPQA
                     HLVPPPSDPLASELFSPGGSTRDLLGQEEGTRQKAACKSLPCARWNLAHFARSQFAPL
                     LLQSHTKAMVLVLFGALLGLSLYGSTLVQDGLALTDVVPRGTKEHAFLSAQLRYFSLY
                     EVALVTQGGFDYAHSQRALFDLHQRFSSLKAVLPPPATQAPRTWLHYYRNWLQGIQAA
                     FDQDWASGRITHHSYRNGSEDGALAYKLLIQTGDAQEPLDFSQLTTRKLVDKDGLIPP
                     ELFYMGLTMWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIPAAQPLEFAQFP
                     FLLHGLQKTADFVETIEGARAACAEAGQAGVRAYPSGSPFLFWEQYLGLRRCFLLAVC
                     ILLVCTFLVCALLLLNPWAASLIVLVLTVMTVELFGIMGFLGVKLSAIPVVILVASVG
                     IGVEFTVHVALGFLTSQGSRNLRAAWALEHTLAPVTDGAVSTLLGLLMLAGSNFDFIV
                     RYFFVVLTVLTLLGLLHGLVLLPVLLSILGPPPEVVQMYRESPEVLSPPAAQGGGLRW
                     GVAPTLPQSFARVTTSMTVALRPPPLPGAYIHPASEEPTWSPAATPAASGSSNLSSRG
                     PCPAT"
     misc_feature    1115..4201
                     /gene="PTCH2"
                     /note="The Eukaryotic (Putative) Sterol Transporter (EST)
                     Family; Region: 2A060602; TIGR00918"
                     /db_xref="CDD:273338"
ORIGIN      
        1 tcacgtgcaa taataaatat ataaattgag tgttataagg cgcacaaaga agcaattatc
       61 cgttaggagg ggtggtgtga ctcaaggaag acttcaaagg cggatggttg atgcatgttc
      121 agttttgggt ctcttttttt tttttcccag gccacgctga gaggcttaca gtatcttagt
      181 tccccgacca gggattgaac ccgtgccctc ggcagtgaaa gcgcggagtc ctaaccactg
      241 gacagccagg gaattccctc atgctccatt ttgaaggtgg cctgccaaaa caagagggcc
      301 acgtctgtca tcagattcgc gttttagaga gatgactggc ctcagtggag agagtggact
      361 gacgtgggag agaatggagg cagagagttg tgaaaagcag tctttgggtc ttggttgggt
      421 cggccagcag ataccttttc tcagcattgg tctctcctga cttaacattt ggccaacgca
      481 tcgcctctcc gggttctccc tccctccttc tccccgaggg caggcaggcg ggcggggaag
      541 cgaggagagg ggtggccctg cctgggtggt ctcctgcccc gccccccgcg gcgccgttgc
      601 ctagcaacgg atccggccgc gcagctccgg gtaatttgtc ggcgactaag ccaaagggag
      661 ggcgtagccc cagcctttcc ctttttcttg gactacagac gcctcctcgg cacagcggtc
      721 gccacctcga gccgcgccgg gcgtcgcgta gctgttcctg cacgcgggag ccactccggt
      781 tccgcgcccc gggcccgcac cgccctgcac tcctacagct cacgaacgcc actgtacacc
      841 cgtacccgcg gctgagcggc cccactgaat tccgacgcgg gacctcgcgg tacgcgggac
      901 caggccagcc tatgggggcg cccagataac gcgggttggg ggcgcccagg ccccccatcc
      961 ccgccagcat ggctcggccg ccaccccttg gggagctgcc cccgggctac acacccccag
     1021 ctcgatctgc agcaccccag cgggcagccg ggtgagccaa gagctgcaat acaccaagga
     1081 gaagctgggg gaggaggctg catacacctc ccagatgttg atacagaccc cgcgccagga
     1141 gggggagaac gtcctcacac ctgaggcact tggcctccac cttcaggcag ccctcaccgc
     1201 cagtaaagtg caagtatcac tctatggaaa gtcctgggat ttgaacaaaa tctgctacaa
     1261 gtcaggagtt cccctaattg aaaatggaat gattgagcgg atgattgaga agctgtttcc
     1321 ctgcgtgatc ctcacccccc tcgactgctt ctgggaagga gccaaactcc aagggggctc
     1381 tgcctacttg ccgggccgcc ctgacatcca gtggaccaac ctggatccag agcaactgct
     1441 ggaggagctg ggcccctttg cctcccttga gggcttccgg gagctgctag acaaggcaca
     1501 ggtgggccag gcctacgtgg ggcggccctg tctgcaccct gacgaccttc actgcccatc
     1561 tagtgcccct aaccatcaca gcaggcaggc tcccaatgtg gctcaggagt tgagcggggg
     1621 ctgccatggc ttctcccaca agttcatgca ctggcaggag gaactgctgc tgggaggcat
     1681 ggccagagac ccccaaggac agctgctgag ggcagaggcc ctgcagagca ccttcctgct
     1741 catgagtccc cgccagctct acgagcactt ccggggcgac taccagacac acgacatcgg
     1801 ctggagcgag gagcaggcca gcacggtgct gcaggcctgg cagcggcgct tcgtgcagct
     1861 ggcgcaggag gccctgcctg ggaacgcgtc ccagcagatc cacgccttct cctccaccac
     1921 cctggatgac atcctgcacg ccttctctga agtcagcgct gtccgtgtgg tgggaggcta
     1981 cctgctcatg ctggcctacg cctgcgtgac aatgctgcgg tgggactgtg ctcagtccca
     2041 gggtgccgtg ggcctcgccg gggtgctgct ggtggcccta gcggtggcct cgggcctcgg
     2101 gctctgtgcc ctgctcggca tcgccttcaa tgccgccact acccaggtgc tgcccttctt
     2161 ggcactgggc attggcgtgg atgacatatt cctgctggca catgccttca cagaggctcc
     2221 acctggcacc cctctccagg agcgcacagg tgagtgtctg cagcgcacag gcaccagcgt
     2281 tgcactcacg tccatcaaca acatggtcgc cttcttcatg gctgccctag ttcccatccc
     2341 tgcactgcgg gccttctcct tgcaggcggc agtagtggtt ggctgcaact ttgtagccgt
     2401 gatgcttgtc ttcccagcgg tcctcagcct ggacctgcac cggcgccact gccagcgcct
     2461 tgatgtgctc tgctgcttct ctagcccctg ctctgctcgg gtgattcaga ttctgcccca
     2521 ggagctgggg gataggacag taccagtggg cattgctcac ctgactgcca ccgttcaggc
     2581 atttgcgcac tgtgaagcca gcagccagca tgtggtcacc atcctgcctc ctcaagccca
     2641 cctggtgccc ccaccttctg acccactggc ctctgagctc ttcagcccag gagggtcaac
     2701 acgggacctt ctaggccagg aggaggggac aaggcagaag gcagcctgca agtccctgcc
     2761 ctgcgcccgc tggaatcttg cccatttcgc ccgctctcag tttgcaccct tgctgctcca
     2821 gtcccacacc aaggccatgg tgctggtact ttttggggct cttctgggcc tgagcctcta
     2881 tggatcgacc ttggtgcagg atgggctggc cctgacagat gtggtgcctc ggggcaccaa
     2941 ggagcatgcc ttcctgagcg cccagctcag gtacttctct ctgtacgagg tggccctggt
     3001 gacacagggt ggctttgact acgcccactc ccaacgcgcc ctctttgatc tgcaccagcg
     3061 cttcagttcc ctcaaggcag tgctgccccc accggccacg caggcacccc gcacctggct
     3121 gcactattac cgcaactggc tacagggaat ccaggctgcg tttgaccagg actgggcttc
     3181 tgggcgcatc acccaccact cataccgcaa tggctctgag gatggggccc tagcctacaa
     3241 gctgctcatc cagaccgggg atgcccagga gcctcttgat ttcagccagc tgaccacaag
     3301 gaagctggtg gacaaggacg ggctgatacc acctgagctc ttctacatgg ggctgaccat
     3361 gtgggtgagc agtgaccctc tgggtctggc agcctcacaa gccaacttct accccccacc
     3421 tcccgagtgg ctgcatgaca agtacgacac caccggggag aaccttcgca tcccggcggc
     3481 ccagcccctg gagtttgccc agttcccctt tctactgcac ggactccaga agactgcaga
     3541 cttcgtggag accattgagg gggcccgggc agcgtgtgcc gaggcaggcc aggctggggt
     3601 gcgcgcctac cccagcggct cccccttcct cttctgggag cagtatctgg gcctgcggcg
     3661 ctgtttcctg ctggcagtct gcatcctgct ggtgtgcact ttcctcgtct gcgccctgct
     3721 gctgctcaac ccctgggcag cttccctcat agtgctggtc ctgacagtga tgaccgtgga
     3781 gctctttggc atcatgggtt tcctgggcgt caagctgagc gccatccccg tggtgatcct
     3841 tgtggcgtct gtaggcattg gtgtcgagtt cacggtccat gtggctctgg gcttcctgac
     3901 ctcccagggt agccggaacc tccgggctgc ctgggcccta gagcacacac tggccccggt
     3961 gaccgatggg gccgtctcca cgttgctggg tctgctcatg cttgctggtt ccaactttga
     4021 cttcattgta aggtacttct tcgtggtgct gacagtactc acactcctag gcctcctcca
     4081 tgggctcgtg ctgctgcctg tgctgctgtc catcctgggc cccccaccag aggtggtaca
     4141 gatgtacagg gagagcccgg aggtcctgag cccaccagct gcacaaggag gagggctcag
     4201 gtggggggta gcccccaccc ttccccagag ctttgccaga gtgactacct ccatgaccgt
     4261 ggccctccgc ccacccccac tgcctggtgc ctacatccac ccagcctctg aagagcctac
     4321 ttggtcccct gctgccacac cagctgccag tggctccagc aacctcagtt ctaggggacc
     4381 atgtccagcc acctgatgaa agagcagctg aagcgtggag accctgttca ggccacatga
     4441 aggcactggg aagccatggg gggttattga atgcagggcg gactcctgga gagccctgct
     4501 gctgctgctg tctgcctcca tcccctccca gacccagcca tcacagacct ccctgagatc
     4561 cacactaaac caccaccctc taggctgtga gcagcgttgc acacccgggt gctccgtgtc
     4621 cgtgcccgtg actgggtggg gtgaaagcca gcaagcactt caggctgcag tgcagccctg
     4681 tcccccctcc caccccgccc tgctgccccc agcaaaccaa gcctgaggga tcctctagca
     4741 cccttctcca gtcctggtcc cccgctgctt gctgacttct gggtaggctc tctgtatccc
     4801 tgcccacctc ttaccacata aattatttat atggagacgt ttatttttgt agtttgtata
     4861 gatgttagct atgctgaaag ttttatt
//
LOCUS       XR_004346937            3297 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus patched 2 (PTCH2), transcript variant X5,
            misc_RNA.
ACCESSION   XR_004346937
VERSION     XR_004346937.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3297
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3297
                     /gene="PTCH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744043"
     misc_RNA        1..3297
                     /gene="PTCH2"
                     /product="patched 2, transcript variant X5"
                     /db_xref="GeneID:116744043"
ORIGIN      
        1 tcacgtgcaa taataaatat ataaattgag tgttataagg cgcacaaaga agcaattatc
       61 cgttaggagg ggtggtgtga ctcaaggaag acttcaaagg cggatggttg atgcatgttc
      121 agttttgggt ctcttttttt tttttcccag gccacgctga gaggcttaca gtatcttagt
      181 tccccgacca gggattgaac ccgtgccctc ggcagtgaaa gcgcggagtc ctaaccactg
      241 gacagccagg gaattccctc atgctccatt ttgaaggtgg cctgccaaaa caagagggcc
      301 acgtctgtca tcagattcgc gttttagaga gatgactggc ctcagtggag agagtggact
      361 gacgtgggag agaatggagg cagagagttg tgaaaagcag tctttgggtc ttggttgggt
      421 cggccagcag ataccttttc tcagcattgg tctctcctga cttaacattt ggccaacgca
      481 tcgcctctcc gggttctccc tccctccttc tccccgaggg caggcaggcg ggcggggaag
      541 cgaggagagg ggtggccctg cctgggtggt ctcctgcccc gccccccgcg gcgccgttgc
      601 ctagcaacgg atccggccgc gcagctccgg gtaatttgtc ggcgactaag ccaaagggag
      661 ggcgtagccc cagcctttcc ctttttcttg gactacagac gcctcctcgg cacagcggtc
      721 gccacctcga gccgcgccgg gcgtcgcgta gctgttcctg cacgcgggag ccactccggt
      781 tccgcgcccc gggcccgcac cgccctgcac tcctacagct cacgaacgcc actgtacacc
      841 cgtacccgcg gctgagcggc cccactgaat tccgacgcgg gacctcgcgg tacgcgggac
      901 caggccagcc tatgggggcg cccagataac gcgggttggg ggcgcccagg ccccccatcc
      961 ccgccagcat ggctcggccg ccaccccttg gggagctgcc cccgggctac acacccccag
     1021 ctcgatctgc agcaccccag atcctagctg ggagccttca ggctccactc tggcttcgtg
     1081 cttacttcca gggcctgctc ttctctctgg gctgtgggat ccagagacac tgtggcaaag
     1141 tgctcttcct gggacttttg gcctttgggg ccctagcgtt gggtctccgc gtggccatca
     1201 ttgaaacaga cctagaacag ctctgggtgg aagcgggcag ccgggtgagc caagagctgc
     1261 aatacaccaa ggagaagctg ggggaggagg ctgcatacac ctcccagatg ttgatacaga
     1321 ccccgcgcca ggagggggag aacgtcctca cacctgaggc acttggcctc caccttcagg
     1381 cagccctcac cgccagtaaa gtgcaagtat cactctatgg aaagtcctgg gatttgaaca
     1441 aaatctgcta caagtcagga gttcccctaa ttgaaaatgg aatgattgag cggatgattg
     1501 agaagctgtt tccctgcgtg atcctcaccc ccctcgactg cttctgggaa ggagccaaac
     1561 tccaaggggg ctctgcctac ttgccgggcc gccctgacat ccagtggacc aacctggatc
     1621 cagagcaact gctggaggag ctgggcccct ttgcctccct tgagggcttc cgggagctgc
     1681 tagacaaggc acaggtgggc caggcctacg tggggcggcc ctgtctgcac cctgacgacc
     1741 ttcactgccc atctagtgcc cctaaccatc acagcaggca ggctcccaat gtggctcagg
     1801 agttgagcgg gggctgccat ggcttctccc acaagttcat gcactggcag gaggaactgc
     1861 tgctgggagg catggccaga gacccccaag gacagctgct gagggcagag gccctgcaga
     1921 gcaccttcct gctcatgagt ccccgccagc tctacgagca cttccggggc gactaccaga
     1981 cacacgacat cggctggagc gaggagcagg ccagcacggt gctgcaggcc tggcagcggc
     2041 gcttcgtgca gctggcgcag gaggccctgc ctgggaacgc gtcccagcag atccacgcct
     2101 tctcctccac caccctggat gacatcctgc acgccttctc tgaagtcagc gctgtccgtg
     2161 tggtgggagg ctacctgctc atgctggcct acgcctgcgt gacaatgctg cggtgggact
     2221 gtgctcagtc ccagggtgcc gtgggcctcg ccggggtgct gctggtggcc ctagcggtgg
     2281 cctcgggcct cgggctctgt gccctgctcg gcatcgcctt caatgccgcc actacccagg
     2341 tgctgccctt cttggcactg ggcattggcg tggatgacat attcctgctg gcacatgcct
     2401 tcacagaggc tccacctggc acccctctcc aggagcgcac aggtgagtgt ctgcagcgca
     2461 caggcaccag cgttgcactc acgtccatca acaacatggt cgccttcttc atggctgccc
     2521 tagttcccat ccctgcactg cgggccttct ccttgcaggc ggcagtagtg gttggctgca
     2581 actttgtagc cgtgatgctt gtcttcccag cggtcctcag cctggacctg caccggcgcc
     2641 actgccagcg ccttgatgtg ctctgctgct tctctagccc ctgctctgct cgggtgattc
     2701 agattctgcc ccaggagctg ggggatagga cagtaccagt gggcattgct cacctgactg
     2761 ccaccgttca ggcatttgcg cactgtgaag ccagcagcca gcatgtggtc accatcctgc
     2821 ctcctcaagc ccacctggtg cccccacctt ctgacccact ggcctctgag ctcttcagcc
     2881 caggagggtc aacacgggac cttctaggcc aggaggaggg gacaaggcag aaggcagcct
     2941 gcaagtccct gccctgcgcc cgctggaatc ttgcccattt cgcccgctct cagtttgcac
     3001 ccttgctgct ccagtcccac accaaggaat ccaggctgcg tttgaccagg actgggcttc
     3061 tgggcgcatc acccaccact cataccgcaa tggctctgag gatggggccc tagcctacaa
     3121 gctgctcatc cagaccgggg atgcccagga gcctcttgat ttcagccagc tgaccacaag
     3181 gaagctggtg gacaaggacg ggctgatacc acctgagctc ttctacatgg ggctgaccat
     3241 gtgggtgagc agtgaccctc tgggtctggc agcctcacaa gccaacttct acccccc
//
LOCUS       XR_004346938            2434 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus patched 2 (PTCH2), transcript variant X6,
            misc_RNA.
ACCESSION   XR_004346938
VERSION     XR_004346938.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2434
                     /gene="PTCH2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744043"
     misc_RNA        1..2434
                     /gene="PTCH2"
                     /product="patched 2, transcript variant X6"
                     /db_xref="GeneID:116744043"
ORIGIN      
        1 tcacgtgcaa taataaatat ataaattgag tgttataagg cgcacaaaga agcaattatc
       61 cgttaggagg ggtggtgtga ctcaaggaag acttcaaagg cggatggttg atgcatgttc
      121 agttttgggt ctcttttttt tttttcccag gccacgctga gaggcttaca gtatcttagt
      181 tccccgacca gggattgaac ccgtgccctc ggcagtgaaa gcgcggagtc ctaaccactg
      241 gacagccagg gaattccctc atgctccatt ttgaaggtgg cctgccaaaa caagagggcc
      301 acgtctgtca tcagattcgc gttttagaga gatgactggc ctcagtggag agagtggact
      361 gacgtgggag agaatggagg cagagagttg tgaaaagcag tctttgggtc ttggttgggt
      421 cggccagcag ataccttttc tcagcattgg tctctcctga cttaacattt ggccaacgca
      481 tcgcctctcc gggttctccc tccctccttc tccccgaggg caggcaggcg ggcggggaag
      541 cgaggagagg ggtggccctg cctgggtggt ctcctgcccc gccccccgcg gcgccgttgc
      601 ctagcaacgg atccggccgc gcagctccgg gtaatttgtc ggcgactaag ccaaagggag
      661 ggcgtagccc cagcctttcc ctttttcttg gactacagac gcctcctcgg cacagcggtc
      721 gccacctcga gccgcgccgg gcgtcgcgta gctgttcctg cacgcgggag ccactccggt
      781 tccgcgcccc gggcccgcac cgccctgcac tcctacagct cacgaacgcc actgtacacc
      841 cgtacccgcg gctgagcggc cccactgaat tccgacgcgg gacctcgcgg tacgcgggac
      901 caggccagcc tatgggggcg cccagataac gcgggttggg ggcgcccagg ccccccatcc
      961 ccgccagcat ggctcggccg ccaccccttg gggagctgcc cccgggctac acacccccag
     1021 ctcgatctgc agcaccccag atcctagctg ggagccttca ggctccactc tggcttcgtg
     1081 cttacttcca gggcctgctc ttctctctgg gctgtgggat ccagagacac tgtggcaaag
     1141 tgctcttcct gggacttttg gcctttgggg ccctagcgtt gggtctccgc gtggccatca
     1201 ttgaaacaga cctagaacag ctctgggtgg aagcgggcag ccgggtgagc caagagctgc
     1261 aatacaccaa ggagaagctg ggggaggagg ctgcatacac ctcccagatg ttgatacaga
     1321 ccccgcgcca ggagggggag aacgtcctca cacctgaggc acttggcctc caccttcagg
     1381 cagccctcac cgccagtaaa gtgcaagtat cactctatgg aaagtcctgg gatttgaaca
     1441 aaatctgcta caagtcagga gttcccctaa ttgaaaatgg aatgattgag cggatgattg
     1501 agaagctgtt tccctgcgtg atcctcaccc ccctcgactg cttctgggaa ggagccaaac
     1561 tccaaggggg ctctgcctac ttgccgggcc gccctgacat ccagtggacc aacctggatc
     1621 cagagcaact gctggaggag ctgggcccct ttgcctccct tgagggcttc cgggagctgc
     1681 tagacaaggc acaggtgggc caggcctacg tggggcggcc ctgtctgcac cctgacgacc
     1741 ttcactgccc atctagtgcc cctaaccatc acagcaggca ggtccacaga gctccgtggc
     1801 aagcatggtt cctggaggtt ccagcccaga gacaccagtt atccaaaacc agggccttga
     1861 gtaatgagcc cctccgctgt ccccctccag gctcccaatg tggctcagga gttgagcggg
     1921 ggctgccatg gcttctccca caagttcatg cactggcagg aggaactgct gctgggaggc
     1981 atggccagag acccccaagg acagctgctg agggcagagg ccctgcagag caccttcctg
     2041 ctcatgagtc cccgccagct ctacgagcac ttccggggcg actaccagac acacgacatc
     2101 ggctggagcg aggagcaggc cagcacggtg ctgcaggcct ggcagcggcg cttcgtgcag
     2161 ctggcgcagg aggccctgcc tgggaacgcg tcccagcaga tccacgcctt ctcctccacc
     2221 accctggatg acatcctgca cgccttctct gaagtcagcg ctgtccgtgt ggtgggaggc
     2281 tacctgctca tgctggccta cgcctgcgtg acaatgctgc ggtgggactg tgctcagtcc
     2341 cagggtgccg tgggcctcgc cggggtgctg ctggtggccc tagcggtggc ctcgggcctc
     2401 gggctctgtg ccctgctcgg catcgccttc aatg
//
LOCUS       XM_032613384            2728 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL2 like 15 (BCL2L15), mRNA.
ACCESSION   XM_032613384
VERSION     XM_032613384.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2728
                     /gene="BCL2L15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744073"
     CDS             250..741
                     /gene="BCL2L15"
                     /codon_start=1
                     /product="bcl-2-like protein 15"
                     /protein_id="XP_032469275.1"
                     /db_xref="GeneID:116744073"
                     /translation="MKSPRTFEEQTECIIDSLLTDFLGPTCQVANRTLRCADELDSGE
                     VCSFDVAIIAGRLRMLGDQFNGELEASAKNIIAETIQGQAGAILQDTVNSLSKAWCAQ
                     DSSLAYERAFLAVSVKLLERVVRMTPEIARQVATPMTNMIIGNTAIREYIQGQGGWEN
                     LES"
     misc_feature    304..>534
                     /gene="BCL2L15"
                     /note="A large family of proteins that share a
                     Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The
                     NADB domain is found in numerous dehydrogenases of
                     metabolic pathways such as glycolysis, and many other
                     redox enzymes. NAD binding involves numerous...; Region:
                     Rossmann-fold NAD(P)(+)-binding proteins; cl21454"
                     /db_xref="CDD:473865"
ORIGIN      
        1 tcttatttaa tccttgttat ttccctgtga aatactttgt gttgtcccca tttacaattc
       61 ctcaaatgcc caaattctta ttcatctttt cagcttttat atatcctata ccctccatct
      121 ggaatggtca tattcctact ctttgcctaa tgaatccctg cttgtccttc agagctcgtc
      181 tcagatgtta ctactcaagg aagccttcct tacccccaga caagcaaaac ttggccataa
      241 acacctaaaa tgaagagccc ccgaaccttt gaggagcaaa cggaatgcat tatagactct
      301 ctactcacag acttcttagg tcccacttgt caggttgcta accggaccct acgttgtgca
      361 gacgaactag attcaggaga ggtctgctct tttgatgtgg ccatcattgc tggtcgcctt
      421 cggatgttgg gtgaccagtt caatggagaa ttggaagctt ctgccaaaaa catcatcgca
      481 gaaaccattc agggacaggc aggagctata cttcaggaca cagttaattc tctcagcaag
      541 gcctggtgtg cccaggattc cagcttggct tatgagagag cctttctggc agtgtcagtg
      601 aaacttcttg aacgtgtggt ccgcatgact cctgagatag caagacaggt ggctacgccc
      661 atgacaaata tgatcattgg gaacactgcc atccgagagt atatccaggg ccagggaggt
      721 tgggaaaacc tggagagctg aagaagaggt ggagctgttt tccagcctga aaaactttga
      781 tcttctttga ctgatcgggt gattgatctc tggcaattaa aacagaaaca accaaatcaa
      841 aaccttcttt ctcttggaca gaactgaact tagctgaata acctgttttc tactgattgt
      901 taaagttagg agcagctccc agaggtctgt agagatttta tactttctgt ttttacatga
      961 gttttaatga ggttttgttg aagcaaagac ctccagactt aaagtagtga ctcgtcagta
     1021 gtggaattcc aggcaacagg gcaggcattt gctggagata ctgtggggaa aagggaacac
     1081 acagtaaacc attccttcag atttagtcct gtcctctggt aaggatcttg tctactaatt
     1141 ttgcagtcta aagggtttca gggagatctt tggttagaaa accttgttat tttaagttga
     1201 ggattttctt ttaaattcat aacctaaatc tcatattaat ttcacctgag ccaacttatt
     1261 ttatgtattt tcaaggctgg aagcaaaaaa aatagcactt tgttcatctg ctcttctact
     1321 aggaaggcca aagagcaata aaacagttgc tgcattttta ttgccacagg atgcaggaag
     1381 tgctggccca cttctgggac agtagggcca tcacagctta gatgaggcaa gctacctacc
     1441 acagtgtttt tcaaagtaca gtttacatac cacttgcatg tgaccttata tgttgctgat
     1501 ttccaggccc catccgctag agattctgat tctgtagggg agggctgggg cccaggttcc
     1561 taacttttta atcagatcca ctggtgattc taatatacac ataaattttg agaaccgtca
     1621 ctttagagca agggttggga aattagagcc cacaggccca atcagcccac cgctttaaaa
     1681 aatttttttt gtaaagaaag ttttattgga atgcagctac actcacttgt ttacatatta
     1741 tttatggctg ttttagcatc gcagcagcag aattgagtag ttatagcaga caccatatag
     1801 cctgtcctgt aaagcttaaa atatttacta tctggccctt caagtttgca gacccctgct
     1861 ctaaagctaa atgaacatta ctccttgtgt aatttaaact ctgttgcaat catgataatt
     1921 ccaaacagag ctgtagatag gataactcct ttttcaaaat ttagtctgag tgtttgttag
     1981 tttttgcata gtccacactt tctttagaac ctttggcaaa aggagctctg tgactcctga
     2041 gtattcgata gaaggtatac atttccctgg ccctgccaca agtgattgga ggtaaaacat
     2101 atggtttcta tggtctgtgt atctcatagc agttcttaat aatctcatag attagtaggc
     2161 agtcatcaaa tagagacttc ttcatctgta agtccccaaa ccagacgatt tacctgaaca
     2221 tcaagaagaa aatcactact aaagcattac tatacctatt tttttaagag aggcgttaat
     2281 ggctttggct aaagtttaac aaagttaacc acatcccctc ccttcaccca gccagcgatc
     2341 tggctcccct agatacacag aaataaagct gtagtgctgt taatgtattc tgactttttc
     2401 aagttatgct atttcctcta ttcttcgata aatcacaatt aggttagtaa tccagaaatg
     2461 agatttcatg tttctcttta gtagaaatta tctgtttttg ctaccaattt aagacacttg
     2521 atgtattcct ttgtccctta cattactgta aactcagcgt ggtgagtttt gtggtatttg
     2581 acctcttaag tgaaatcatt atttttactt tgactaatgc tgttctcttc atgaaataaa
     2641 attcttctct ctatgcattt gaactaattc tcagcaagtg caatctaaat tgaatgatat
     2701 agaaataagg agcagattgg tggttgcc
//
LOCUS       XM_032613395            1563 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MARCKS like 1 (MARCKSL1), transcript
            variant X1, mRNA.
ACCESSION   XM_032613395
VERSION     XM_032613395.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1563
                     /gene="MARCKSL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 6 long SRA reads, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744081"
     CDS             203..799
                     /gene="MARCKSL1"
                     /codon_start=1
                     /product="MARCKS-related protein"
                     /protein_id="XP_032469286.1"
                     /db_xref="GeneID:116744081"
                     /translation="MGSQSSKAPRGDVTAEEAAGASPAKVNGQENGHVKSNGDLSPKG
                     EGESTPVNGTEEAAGATGDAIEPAPPSQGAEAKGDVPPKETPKKKKKFSFKKPFKLSG
                     LSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSEEGTALEGKDAATPESQEPQAKGAE
                     ASAASKGGDTEEAGPQAAEPSTPSGPESGPTPASEQNE"
     misc_feature    215..>772
                     /gene="MARCKSL1"
                     /note="MARCKS family; Region: MARCKS; pfam02063"
                     /db_xref="CDD:460433"
ORIGIN      
        1 ggcattctgg cgcggagcgg agcggcggtg ggtgtagcta gcgggtcctg cgcggagcgg
       61 gggtgcagct aggtttcccc ccgacacccc tccccctcag gcgcgagccc cacccctccg
      121 ccggccaggc ccacccgacc gaactatccc gtgcggcgcg agcccggggc ggctccgggc
      181 gccccccagc agaaccccca ccatgggcag ccagagctcc aaggctcccc ggggcgacgt
      241 gaccgccgag gaggcagcag gcgcttcccc cgctaaggtc aacggacagg agaacggcca
      301 cgtgaaaagc aatggagact tatcccccaa aggtgaaggg gagtcgaccc ccgtgaacgg
      361 aacagaggag gcagccgggg ccactggtga tgccatcgag ccggcacccc ctagccaggg
      421 cgctgaggcc aagggggacg tcccccccaa ggagaccccc aagaagaaga agaaattctc
      481 tttcaagaag cctttcaaat tgagtggcct gtccttcaag agaaatcgga aggagggagg
      541 gggtgattcg tctgcctcct cacccacaga ggaagagcag gagcaggggg agatcggtgc
      601 ctgcagcgag gaaggcactg ccctggaagg gaaggatgcc gccacccctg agagccagga
      661 gccccaggcc aaaggggcag aggctagcgc tgcctccaag ggaggagaca cagaagaggc
      721 agggccccag gccgcagagc catccactcc ctcggggccg gagagtggcc ctacaccagc
      781 gagcgagcag aatgagtagc tgggtggggg caggtgggtg atctctaagc tgcaaaaact
      841 gtgctgccct tgtgaggtca ctgcctggac ctggtgccct ggctgccttc ctgtgcccag
      901 aaaggaaggg gctgttgccc cctagccacg ttccctctcc tcctctccct cctgtggatt
      961 ctcccatcat ccatctggtc ttcctaaggc cagtcgaaga tggtcccttg cagtttccca
     1021 agttaggtta gtgatgtgaa atgctcctgc ccctgtccct gcctccttcc ctgtccccac
     1081 ctgtgcagaa ggcagttgct ggttttcttc cccaattctt ttccaagtag gctttgttta
     1141 ctccccaaat ccctgagcca gaggtggggg tgcctactcc cacgccctga gtgtccacct
     1201 tcccctgttg tttgtagtct cctgtgctgg gcctagtggc ccctgggctg gggaggacac
     1261 tgcccctgtc taggtttttc taaatgtctt actcaagttc aaacctccag cttgtgaatc
     1321 aactgtgtct cttttttgac ttggtaagca agtattaagc tttggggtgg gggggaggta
     1381 tgtaatgtga aacaacttct tgttgtcttt tttttttttt ttccccctcc cattgttgta
     1441 aataactttt aatggccaaa ccccagattt gtaatttttt tttttttttc taactgctaa
     1501 aaccattctc ttccacctgg ttttactgta acatttggaa aaggaataaa tgtcgtccct
     1561 tta
//
LOCUS       XM_032613402            1597 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MARCKS like 1 (MARCKSL1), transcript
            variant X2, mRNA.
ACCESSION   XM_032613402
VERSION     XM_032613402.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1597
                     /gene="MARCKSL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744081"
     CDS             237..833
                     /gene="MARCKSL1"
                     /codon_start=1
                     /product="MARCKS-related protein"
                     /protein_id="XP_032469293.1"
                     /db_xref="GeneID:116744081"
                     /translation="MGSQSSKAPRGDVTAEEAAGASPAKVNGQENGHVKSNGDLSPKG
                     EGESTPVNGTEEAAGATGDAIEPAPPSQGAEAKGDVPPKETPKKKKKFSFKKPFKLSG
                     LSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSEEGTALEGKDAATPESQEPQAKGAE
                     ASAASKGGDTEEAGPQAAEPSTPSGPESGPTPASEQNE"
     misc_feature    249..>806
                     /gene="MARCKSL1"
                     /note="MARCKS family; Region: MARCKS; pfam02063"
                     /db_xref="CDD:460433"
ORIGIN      
        1 gacaggttat gtccaggtct ctgagcctca ggctcctcgg ctttcaaatg gggctggaga
       61 tgcccctcaa gatcacggca ccaccccaga tgggactttg tcatggtcca ggctgagagc
      121 aggagggacc aaaggcgcga gccccacccc tccgccggcc aggcccaccc gaccgaacta
      181 tcccgtgcgg cgcgagcccg gggcggctcc gggcgccccc cagcagaacc cccaccatgg
      241 gcagccagag ctccaaggct ccccggggcg acgtgaccgc cgaggaggca gcaggcgctt
      301 cccccgctaa ggtcaacgga caggagaacg gccacgtgaa aagcaatgga gacttatccc
      361 ccaaaggtga aggggagtcg acccccgtga acggaacaga ggaggcagcc ggggccactg
      421 gtgatgccat cgagccggca ccccctagcc agggcgctga ggccaagggg gacgtccccc
      481 ccaaggagac ccccaagaag aagaagaaat tctctttcaa gaagcctttc aaattgagtg
      541 gcctgtcctt caagagaaat cggaaggagg gagggggtga ttcgtctgcc tcctcaccca
      601 cagaggaaga gcaggagcag ggggagatcg gtgcctgcag cgaggaaggc actgccctgg
      661 aagggaagga tgccgccacc cctgagagcc aggagcccca ggccaaaggg gcagaggcta
      721 gcgctgcctc caagggagga gacacagaag aggcagggcc ccaggccgca gagccatcca
      781 ctccctcggg gccggagagt ggccctacac cagcgagcga gcagaatgag tagctgggtg
      841 ggggcaggtg ggtgatctct aagctgcaaa aactgtgctg cccttgtgag gtcactgcct
      901 ggacctggtg ccctggctgc cttcctgtgc ccagaaagga aggggctgtt gccccctagc
      961 cacgttccct ctcctcctct ccctcctgtg gattctccca tcatccatct ggtcttccta
     1021 aggccagtcg aagatggtcc cttgcagttt cccaagttag gttagtgatg tgaaatgctc
     1081 ctgcccctgt ccctgcctcc ttccctgtcc ccacctgtgc agaaggcagt tgctggtttt
     1141 cttccccaat tcttttccaa gtaggctttg tttactcccc aaatccctga gccagaggtg
     1201 ggggtgccta ctcccacgcc ctgagtgtcc accttcccct gttgtttgta gtctcctgtg
     1261 ctgggcctag tggcccctgg gctggggagg acactgcccc tgtctaggtt tttctaaatg
     1321 tcttactcaa gttcaaacct ccagcttgtg aatcaactgt gtctcttttt tgacttggta
     1381 agcaagtatt aagctttggg gtggggggga ggtatgtaat gtgaaacaac ttcttgttgt
     1441 cttttttttt ttttttcccc ctcccattgt tgtaaataac ttttaatggc caaaccccag
     1501 atttgtaatt tttttttttt tttctaactg ctaaaaccat tctcttccac ctggttttac
     1561 tgtaacattt ggaaaaggaa taaatgtcgt cccttta
//
LOCUS       XM_032613415             672 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sesquipedalian-1-like (LOC116744094),
            mRNA.
ACCESSION   XM_032613415
VERSION     XM_032613415.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..672
                     /gene="LOC116744094"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins"
                     /db_xref="GeneID:116744094"
     CDS             13..672
                     /gene="LOC116744094"
                     /codon_start=1
                     /product="sesquipedalian-1-like"
                     /protein_id="XP_032469306.1"
                     /db_xref="GeneID:116744094"
                     /translation="MKLNQRSLAFHATCDAPADNAGFQYKKGGRHAAHHRRWSVPRGT
                     MLFCFGDAAGREPVGVIILEGCTVELVEAAEEFAFAVRFAGARAHTYVLEAESQAAME
                     GWVKALSRASFDYLRLVVRELGHRLAAARAGGPLPPRRPHALPPKEDGCALWSAEIPA
                     PAAAPRSLPGPEPPPLPPCRRASAPSGPLDSASFAQLHEWYGQEVRALRGQWLRSQAQ
                     P"
     misc_feature    46..402
                     /gene="LOC116744094"
                     /note="Pleckstrin homology-like domain; Region: PH-like;
                     cl17171"
                     /db_xref="CDD:473070"
ORIGIN      
        1 ggccccgccg ccatgaagtt gaaccagcgc agcctggcct tccacgccac ctgcgacgcc
       61 ccggccgaca acgcgggctt ccagtacaag aagggcggcc ggcatgcggc ccaccaccgc
      121 cgctggtctg taccgcgcgg caccatgctc ttctgcttcg gggacgcggc cggccgtgag
      181 cccgtgggag tcatcatcct ggagggctgc accgtggagc tggtggaggc ggccgaggag
      241 ttcgccttcg ccgtgcgctt cgctggggcc cgggcccaca cctacgtgct ggaggccgag
      301 agccaggccg ccatggaggg ctgggtgaag gcgctgtcgc gggccagctt cgactacctg
      361 cggctggtgg tgcgcgagct gggacaccgg ttggcggccg cgcgcgcagg cggcccactc
      421 ccgccccgcc gaccccacgc gctcccgccc aaggaggacg gctgtgcctt gtggagcgcg
      481 gagatccccg cccccgccgc cgcccccaga tccctgcccg gtcccgagcc cccgccacta
      541 ccgccctgcc ggcgggcctc ggcgcccagc gggcctctcg actcggcctc cttcgcccag
      601 ctgcacgagt ggtacgggca ggaggtcagg gcgctgaggg gccagtggct ccgcagccag
      661 gcccagccct ga
//
LOCUS       XM_032613425            2331 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NIMA related kinase 2 (NEK2), mRNA.
ACCESSION   XM_032613425
VERSION     XM_032613425.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2331
                     /gene="NEK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 long SRA reads, 5
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744101"
     CDS             135..1307
                     /gene="NEK2"
                     /codon_start=1
                     /product="serine/threonine-protein kinase Nek2"
                     /protein_id="XP_032469316.1"
                     /db_xref="GeneID:116744101"
                     /translation="MPTRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM
                     TEAEKHMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASAITKGT
                     KERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF
                     GLARILNHDTSFAKTFVGTPYYMSPEQMNHMSYNEKSDIWSLGCLLYELCALMPPFTA
                     FNQKELAGKIREGKFRRIPYRYSDELNDIITRMLNLKDYHRPSVEEILENPLIADLVA
                     EEQRRNPERRGRRLGEPGKLQDSSPVLSELKLKETQLQERERALRAREENLEQKEREL
                     CVRERLAENKLARAESLLRNYSLLKDQKFLSLAGGPELFDLTSSIMKKKVHSSGES"
     misc_feature    153..947
                     /gene="NEK2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Never In Mitosis gene A (NIMA)-related kinase 2; Region:
                     STKc_Nek2; cd08217"
                     /db_xref="CDD:270857"
     misc_feature    order(174..188,198..200,237..239,243..245,336..338,
                     390..401,411..413,417..419,555..557,561..563,567..572,
                     576..578,609..611,618..620,624..626,666..677)
                     /gene="NEK2"
                     /note="active site"
                     /db_xref="CDD:270857"
     misc_feature    order(174..179,183..188,198..200,237..239,243..245,
                     336..338,393..401,411..413,570..572,576..578,624..626)
                     /gene="NEK2"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270857"
     misc_feature    order(186..188,411..413,417..419,555..557,561..563,
                     567..569,618..620,666..677)
                     /gene="NEK2"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270857"
     misc_feature    order(606..644,651..677)
                     /gene="NEK2"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270857"
ORIGIN      
        1 gaggcggggg cccgcgacgg ttaaactggg ctggagactg gggcggcctg gcgctgtgac
       61 ttgaggtctc cgactcggtg gtggcatatc cgcgacggtg gtgcgacgtt caggtgttct
      121 gcgcgggtct ggccatgccg actcgggcgg aggactacga ggtgctgtac accattggca
      181 cgggctccta cggccgctgc cagaagatcc ggaggaagag cgatggcaag atcttagttt
      241 ggaaggaact ggactatggc tccatgacag aagctgagaa acacatgctt gtttctgaag
      301 tgaatttact tcgtgagctg aagcatccaa atatcgtccg atactatgat agaattattg
      361 accgaaccaa cacaacactg tacattgtaa tggaatattg tgaaggaggg gacctggcta
      421 gtgcaattac aaaggggacc aaggaaaggc aatacttgga tgaagagttt gttcttcgag
      481 tgatgactca gttgactctg gccctaaagg aatgtcacag acgaagtgat ggtggtcata
      541 ctgtgctgca tcgggatctg aaaccagcca atgttttcct ggatggcaag caaaacgtta
      601 agcttggaga ctttgggtta gctaggatat taaaccacga tacgagtttt gcaaaaacat
      661 ttgttggcac accttattat atgtctcctg agcaaatgaa tcacatgtcc tacaatgaga
      721 agtcagatat ctggtcacta ggttgcttgc tgtatgaact gtgtgcatta atgcctccat
      781 ttacagcttt caaccagaaa gaactagctg ggaagatcag agaaggcaaa ttcaggcgaa
      841 ttccatatcg ttactctgat gaattaaatg acattattac aaggatgtta aatttaaagg
      901 attaccatcg accttctgtt gaagaaattc ttgagaatcc tttgatagca gacttggttg
      961 cagaagagca aaggagaaat cctgagagaa gagggcggcg attaggagaa ccaggaaagt
     1021 tgcaggactc cagccctgta ttgagtgagc tgaaactgaa ggaaacacag ttacaggagc
     1081 gggagcgagc cctcagagca agggaagaaa acctggagca gaaggaacgt gagctttgtg
     1141 ttcgtgagag actggcagag aacaagctgg ccagagcaga aagtctgttg aggaattaca
     1201 gcctgctgaa ggaccagaag ttcctgtctc tggcgggtgg tccagaactt tttgatctta
     1261 catcctcgat aatgaagaag aaagttcatt ccagtgggga gagttaagga gaatatcatg
     1321 aggagtgaga gttctgagag tcagctcacc ttcaaatcca agtgcaagga actgaaaaaa
     1381 ggcttcatgc tgctcagctt cgcgctccaa gccctgtcag acattgaaaa acttaccaac
     1441 tgaaaagcag acagatcctg ggcatgcgct agcctgaccc agagacacag acctgtgtac
     1501 agtgtttaat gtgccagccc tttcgcgatg ggtattctac tgctatagcc tgtatacttg
     1561 gttctgcgag ccgtgccttt tctatagtaa gcagggtggt ttggtattac tcttgctgtt
     1621 tttcagcaag aattgtacca atggggcttc ctggtggcgc agtggttgag agtccacctg
     1681 ctgatgcagg gatgcgggtt catgcccggt ccggaagatt ccacggcagg gcccgtgagc
     1741 catggccgct gagcctgcgc atccggagcc tgtgctccac aacgggagag gccacaacag
     1801 ccgagagggc ccgtgtaccg caaaaaaaaa aaggtaccaa tgtccactcc tttcattttt
     1861 cttttgtaaa gaacgcttca tagaaagaag aacgctttct tggccagttg ggtttttaat
     1921 cctgtgtgtg attactactg gaacatgaaa tgttatattc tatatgttgg ggtggggaaa
     1981 taatattaga aaaagatatt tacccaggag cagcacttag aagttttaag agactgaagt
     2041 ggtgtgctta caattgtcac gtctttagtt aaaatttaag tctgaggttt taaatgttct
     2101 tgagcttaga gaaaacctaa ttggatatag attggtcact aataccttga catctcgctt
     2161 ataaatatcc ccttgctctg tagtttaaat ctgtcacctt ttgtgaaaat ccatcactat
     2221 gatgtctcta ctctttttct ttcccttttt atcctgttta acagtatgtg agctgtctgt
     2281 catttgccca ctcttttttc actaaataaa agaattcttt agttttcctg t
//
LOCUS       XM_032613433            2802 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus barttin CLCNK type accessory subunit beta
            (BSND), transcript variant X1, mRNA.
ACCESSION   XM_032613433
VERSION     XM_032613433.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2802
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2802
                     /gene="BSND"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744111"
     CDS             934..1935
                     /gene="BSND"
                     /codon_start=1
                     /product="barttin isoform X1"
                     /protein_id="XP_032469324.1"
                     /db_xref="GeneID:116744111"
                     /translation="MTSPRAGVFVSFTHGCPLVPRRVPGTQLMLRECWVNEEPARAGT
                     QRSSRPQVLGPEQAPSCQTGWPPLSGLSPRITFVPADSDFQGILSPKALGLLENGLTA
                     EMKSPRTPYVRLWEEAAYDQSLPDFSHMQMKVMGYSEDPHPVLAPKPGRPQPGASDGG
                     EGGPRDPQALLEAAVVIHRGSDQDEGERDPSQGRPRPPTCPQGPAPLASFQDDLDVDS
                     SEGSSPNLAPSEGAEPRPASPEPQACRCRLDCFHDFALIDAPTLEDVPPEKQLQVAAL
                     PSSWQRPPRTKREEEEASDAGTEEPEQEEEDLYYGLPDSPGDPLPDKELDFEPDAQG"
     misc_feature    1150..1725
                     /gene="BSND"
                     /note="Bartter syndrome, infantile, with sensorineural
                     deafness (Barttin); Region: Barttin; pfam15462"
                     /db_xref="CDD:464731"
ORIGIN      
        1 ggcaccttct acgccatggg cggtgtcatg gtgatcgggg gtgtcatctg gaacatgtgc
       61 cagtgctacc ccaaggcttt tcacagtgac aacgataatg atgctgtaga gtgataatga
      121 tcatggtgat ggtgatgaag gcgctggtgc tgatgttgct ggtgatgatg taattatgat
      181 gttgatggag atgatggtgg tagtggtgat tatgatgatg gggagatgga ggaaggggca
      241 gcttctagga aatacagagt cagctggcag gtgcaggaca tactaagtgg gtgtggaaga
      301 tacccaggcc cctccctcat ttccagacat ctgggggaag cttactcctc acaggagttc
      361 taagaacaca tccatctatc attcccttct ccccagcagg attgggtgct ttcctggtgc
      421 agacaagtgt ctttctctca ccgtactcta cgggaaaggg agaaaagggg ctgccattta
      481 tgaacctggc ataacacaat agggtctcat caaatatttg ttgaacaaat tttcagctgg
      541 ggagaaccag acttagagaa gtcaggtaac ttcatcttca gtagcatcaa actatgattt
      601 actgagcagc tactgtgtgc caggctctgt gctaggggac tccttatatg ttatctcatg
      661 gaatccagga gacaggcatt actagtacta cttttttaaa ttgtaaaata tacataacat
      721 aaaatttacc atcttaaccg tttttaagtg aacagttcag tagtgtgggc acaacatcag
      781 ccatccactt ctctgtcctc cccaccgcag cctctgtctg tgccaagaaa cacatgaact
      841 gcttcccact cactcaccag atgcggatga agggcctact ccgggtcggg caagtgctgg
      901 gcactggatg aggacccctg gaaatgacaa gatatgacct cccccagggc aggggtgttc
      961 gtctcattca ctcatggctg ccccctagtg cctagaagag tgcctggcac acagctgatg
     1021 ctccgtgagt gctgggtgaa tgaagagcca gcgagagcag gaacccagag gtccagccgg
     1081 ccacaggtgc tgggccctga gcaggcaccc tcctgtcaaa cagggtggcc tcccttgtca
     1141 ggcctctctc ctaggatcac cttcgtaccc gctgactctg acttccaagg catcctgtca
     1201 ccgaaggcgc tgggcctgct ggaaaatggg ctcactgctg agatgaagag cccccggacc
     1261 ccctacgtca ggctgtggga ggaagccgcc tacgaccaga gcctgccgga cttcagccac
     1321 atgcagatga aggtcatggg ctacagtgaa gacccccacc ccgtcctggc tcctaagccg
     1381 ggacggccac agccaggagc cagcgatgga ggagaaggtg gccctcgcga ccctcaggcc
     1441 ttgttggaag ccgccgtggt catacacagg ggctcggacc aggacgaggg agaaagagac
     1501 ccaagtcagg gcaggcccag acccccgacc tgtccccagg gccctgcacc cttggcttct
     1561 ttccaagatg acctggacgt ggactccagt gagggcagca gtcccaacct ggcaccatct
     1621 gagggggcgg agccccggcc tgcatccccg gagccccagg cttgcaggtg ccggctggac
     1681 tgcttccatg actttgccct cattgatgcc ccaacgttgg aggatgtgcc tccagagaag
     1741 cagctacagg tggcagccct gcccagctcc tggcagagac ccccgaggac aaagcgggag
     1801 gaagaggagg cttcggacgc aggtacagag gagccggaac aggaagagga agacttgtac
     1861 tacgggcttc ccgacagccc tggggacccc cttccggaca aggaactgga ctttgagccc
     1921 gacgcccagg gctgacatgg aactgctctc tgggttttag cctggctctg gggctaaccc
     1981 cgatgtgacc acacaggact tcaatttcac tacctgcaaa atggggttag atggaggttc
     2041 acaggagaca gtggacccga gagcattttg agaactgcac agaaatgcac agggaggaga
     2101 tgattacatt actgggccat tgctgctctg attattaata gcttttgtaa agctctgaag
     2161 gtcaaatatg attagttgag aagatctgta gcagccaggg ccctcaagag ccctttccgc
     2221 ctccccccag agctggcctc tgaacaggaa ccctgctggg ggctaccctc gtgtccccga
     2281 tcttctgtga aggcctctca gggttcttgt tcctgttgca tcttttagtc cagccggggg
     2341 atggcgtgat ttgttttcac tcagagctaa cgtccccggc ccacatccct cctgtgtctc
     2401 ctgtagctct gggatccaac accctccatg agtgacctct gctgacctcc cagctttcgc
     2461 cctggtcagc cccaccccac gttcaccctg ctgccccatg cccttgccaa gctgtctcct
     2521 ctgcccggat gccctttgtc ccctgtctgc cgggcacatt caggctcttc aaaccactgc
     2581 acagacgtcc ctcttctgaa ggcttttcct gatgtcaccg cttctgggcc gagttagtcc
     2641 tggctcccgt gtgccacccc tgggccatct ctgggccttg cgcatttatc atggagcatg
     2701 gctgcctgct caaggtcagc agctttgctt tactcacctc gatctctcct gtgcccggct
     2761 ggtggtcatt gagcatgtac agaagtgacc agaacccatg ag
//
LOCUS       XM_032613440            2080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus barttin CLCNK type accessory subunit beta
            (BSND), transcript variant X2, mRNA.
ACCESSION   XM_032613440
VERSION     XM_032613440.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2080
                     /gene="BSND"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744111"
     CDS             212..1213
                     /gene="BSND"
                     /codon_start=1
                     /product="barttin isoform X1"
                     /protein_id="XP_032469331.1"
                     /db_xref="GeneID:116744111"
                     /translation="MTSPRAGVFVSFTHGCPLVPRRVPGTQLMLRECWVNEEPARAGT
                     QRSSRPQVLGPEQAPSCQTGWPPLSGLSPRITFVPADSDFQGILSPKALGLLENGLTA
                     EMKSPRTPYVRLWEEAAYDQSLPDFSHMQMKVMGYSEDPHPVLAPKPGRPQPGASDGG
                     EGGPRDPQALLEAAVVIHRGSDQDEGERDPSQGRPRPPTCPQGPAPLASFQDDLDVDS
                     SEGSSPNLAPSEGAEPRPASPEPQACRCRLDCFHDFALIDAPTLEDVPPEKQLQVAAL
                     PSSWQRPPRTKREEEEASDAGTEEPEQEEEDLYYGLPDSPGDPLPDKELDFEPDAQG"
     misc_feature    428..1003
                     /gene="BSND"
                     /note="Bartter syndrome, infantile, with sensorineural
                     deafness (Barttin); Region: Barttin; pfam15462"
                     /db_xref="CDD:464731"
ORIGIN      
        1 gccccaggtc tacggcacct tctacgccat gggcggtgtc atggtgatcg ggggtgtcat
       61 ctggaacatg tgccagtgct accccaagcc tctgtctgtg ccaagaaaca catgaactgc
      121 ttcccactca ctcaccagat gcggatgaag ggcctactcc gggtcgggca agtgctgggc
      181 actggatgag gacccctgga aatgacaaga tatgacctcc cccagggcag gggtgttcgt
      241 ctcattcact catggctgcc ccctagtgcc tagaagagtg cctggcacac agctgatgct
      301 ccgtgagtgc tgggtgaatg aagagccagc gagagcagga acccagaggt ccagccggcc
      361 acaggtgctg ggccctgagc aggcaccctc ctgtcaaaca gggtggcctc ccttgtcagg
      421 cctctctcct aggatcacct tcgtacccgc tgactctgac ttccaaggca tcctgtcacc
      481 gaaggcgctg ggcctgctgg aaaatgggct cactgctgag atgaagagcc cccggacccc
      541 ctacgtcagg ctgtgggagg aagccgccta cgaccagagc ctgccggact tcagccacat
      601 gcagatgaag gtcatgggct acagtgaaga cccccacccc gtcctggctc ctaagccggg
      661 acggccacag ccaggagcca gcgatggagg agaaggtggc cctcgcgacc ctcaggcctt
      721 gttggaagcc gccgtggtca tacacagggg ctcggaccag gacgagggag aaagagaccc
      781 aagtcagggc aggcccagac ccccgacctg tccccagggc cctgcaccct tggcttcttt
      841 ccaagatgac ctggacgtgg actccagtga gggcagcagt cccaacctgg caccatctga
      901 gggggcggag ccccggcctg catccccgga gccccaggct tgcaggtgcc ggctggactg
      961 cttccatgac tttgccctca ttgatgcccc aacgttggag gatgtgcctc cagagaagca
     1021 gctacaggtg gcagccctgc ccagctcctg gcagagaccc ccgaggacaa agcgggagga
     1081 agaggaggct tcggacgcag gtacagagga gccggaacag gaagaggaag acttgtacta
     1141 cgggcttccc gacagccctg gggaccccct tccggacaag gaactggact ttgagcccga
     1201 cgcccagggc tgacatggaa ctgctctctg ggttttagcc tggctctggg gctaaccccg
     1261 atgtgaccac acaggacttc aatttcacta cctgcaaaat ggggttagat ggaggttcac
     1321 aggagacagt ggacccgaga gcattttgag aactgcacag aaatgcacag ggaggagatg
     1381 attacattac tgggccattg ctgctctgat tattaatagc ttttgtaaag ctctgaaggt
     1441 caaatatgat tagttgagaa gatctgtagc agccagggcc ctcaagagcc ctttccgcct
     1501 ccccccagag ctggcctctg aacaggaacc ctgctggggg ctaccctcgt gtccccgatc
     1561 ttctgtgaag gcctctcagg gttcttgttc ctgttgcatc ttttagtcca gccgggggat
     1621 ggcgtgattt gttttcactc agagctaacg tccccggccc acatccctcc tgtgtctcct
     1681 gtagctctgg gatccaacac cctccatgag tgacctctgc tgacctccca gctttcgccc
     1741 tggtcagccc caccccacgt tcaccctgct gccccatgcc cttgccaagc tgtctcctct
     1801 gcccggatgc cctttgtccc ctgtctgccg ggcacattca ggctcttcaa accactgcac
     1861 agacgtccct cttctgaagg cttttcctga tgtcaccgct tctgggccga gttagtcctg
     1921 gctcccgtgt gccacccctg ggccatctct gggccttgcg catttatcat ggagcatggc
     1981 tgcctgctca aggtcagcag ctttgcttta ctcacctcga tctctcctgt gcccggctgg
     2041 tggtcattga gcatgtacag aagtgaccag aacccatgag
//
LOCUS       XM_032613450            2161 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus barttin CLCNK type accessory subunit beta
            (BSND), transcript variant X3, mRNA.
ACCESSION   XM_032613450
VERSION     XM_032613450.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2161
                     /gene="BSND"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744111"
     CDS             293..1294
                     /gene="BSND"
                     /codon_start=1
                     /product="barttin isoform X1"
                     /protein_id="XP_032469341.1"
                     /db_xref="GeneID:116744111"
                     /translation="MTSPRAGVFVSFTHGCPLVPRRVPGTQLMLRECWVNEEPARAGT
                     QRSSRPQVLGPEQAPSCQTGWPPLSGLSPRITFVPADSDFQGILSPKALGLLENGLTA
                     EMKSPRTPYVRLWEEAAYDQSLPDFSHMQMKVMGYSEDPHPVLAPKPGRPQPGASDGG
                     EGGPRDPQALLEAAVVIHRGSDQDEGERDPSQGRPRPPTCPQGPAPLASFQDDLDVDS
                     SEGSSPNLAPSEGAEPRPASPEPQACRCRLDCFHDFALIDAPTLEDVPPEKQLQVAAL
                     PSSWQRPPRTKREEEEASDAGTEEPEQEEEDLYYGLPDSPGDPLPDKELDFEPDAQG"
     misc_feature    509..1084
                     /gene="BSND"
                     /note="Bartter syndrome, infantile, with sensorineural
                     deafness (Barttin); Region: Barttin; pfam15462"
                     /db_xref="CDD:464731"
ORIGIN      
        1 ggcaccttct acgccatggg cggtgtcatg gtgatcgggg gtgtcatctg gaacatgtgc
       61 cagtgctacc ccaaggcttt tcacagtgac aacgataatg atgctgtaga gtgataatga
      121 tcatggtgat ggtgatgaag gcgctggtgc tgatgttgct ggtgatgatc ctctgtctgt
      181 gccaagaaac acatgaactg cttcccactc actcaccaga tgcggatgaa gggcctactc
      241 cgggtcgggc aagtgctggg cactggatga ggacccctgg aaatgacaag atatgacctc
      301 ccccagggca ggggtgttcg tctcattcac tcatggctgc cccctagtgc ctagaagagt
      361 gcctggcaca cagctgatgc tccgtgagtg ctgggtgaat gaagagccag cgagagcagg
      421 aacccagagg tccagccggc cacaggtgct gggccctgag caggcaccct cctgtcaaac
      481 agggtggcct cccttgtcag gcctctctcc taggatcacc ttcgtacccg ctgactctga
      541 cttccaaggc atcctgtcac cgaaggcgct gggcctgctg gaaaatgggc tcactgctga
      601 gatgaagagc ccccggaccc cctacgtcag gctgtgggag gaagccgcct acgaccagag
      661 cctgccggac ttcagccaca tgcagatgaa ggtcatgggc tacagtgaag acccccaccc
      721 cgtcctggct cctaagccgg gacggccaca gccaggagcc agcgatggag gagaaggtgg
      781 ccctcgcgac cctcaggcct tgttggaagc cgccgtggtc atacacaggg gctcggacca
      841 ggacgaggga gaaagagacc caagtcaggg caggcccaga cccccgacct gtccccaggg
      901 ccctgcaccc ttggcttctt tccaagatga cctggacgtg gactccagtg agggcagcag
      961 tcccaacctg gcaccatctg agggggcgga gccccggcct gcatccccgg agccccaggc
     1021 ttgcaggtgc cggctggact gcttccatga ctttgccctc attgatgccc caacgttgga
     1081 ggatgtgcct ccagagaagc agctacaggt ggcagccctg cccagctcct ggcagagacc
     1141 cccgaggaca aagcgggagg aagaggaggc ttcggacgca ggtacagagg agccggaaca
     1201 ggaagaggaa gacttgtact acgggcttcc cgacagccct ggggaccccc ttccggacaa
     1261 ggaactggac tttgagcccg acgcccaggg ctgacatgga actgctctct gggttttagc
     1321 ctggctctgg ggctaacccc gatgtgacca cacaggactt caatttcact acctgcaaaa
     1381 tggggttaga tggaggttca caggagacag tggacccgag agcattttga gaactgcaca
     1441 gaaatgcaca gggaggagat gattacatta ctgggccatt gctgctctga ttattaatag
     1501 cttttgtaaa gctctgaagg tcaaatatga ttagttgaga agatctgtag cagccagggc
     1561 cctcaagagc cctttccgcc tccccccaga gctggcctct gaacaggaac cctgctgggg
     1621 gctaccctcg tgtccccgat cttctgtgaa ggcctctcag ggttcttgtt cctgttgcat
     1681 cttttagtcc agccggggga tggcgtgatt tgttttcact cagagctaac gtccccggcc
     1741 cacatccctc ctgtgtctcc tgtagctctg ggatccaaca ccctccatga gtgacctctg
     1801 ctgacctccc agctttcgcc ctggtcagcc ccaccccacg ttcaccctgc tgccccatgc
     1861 ccttgccaag ctgtctcctc tgcccggatg ccctttgtcc cctgtctgcc gggcacattc
     1921 aggctcttca aaccactgca cagacgtccc tcttctgaag gcttttcctg atgtcaccgc
     1981 ttctgggccg agttagtcct ggctcccgtg tgccacccct gggccatctc tgggccttgc
     2041 gcatttatca tggagcatgg ctgcctgctc aaggtcagca gctttgcttt actcacctcg
     2101 atctctcctg tgcccggctg gtggtcattg agcatgtaca gaagtgacca gaacccatga
     2161 g
//
LOCUS       XM_032613460            2153 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus barttin CLCNK type accessory subunit beta
            (BSND), transcript variant X4, mRNA.
ACCESSION   XM_032613460
VERSION     XM_032613460.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2153
                     /gene="BSND"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744111"
     CDS             285..1286
                     /gene="BSND"
                     /codon_start=1
                     /product="barttin isoform X1"
                     /protein_id="XP_032469351.1"
                     /db_xref="GeneID:116744111"
                     /translation="MTSPRAGVFVSFTHGCPLVPRRVPGTQLMLRECWVNEEPARAGT
                     QRSSRPQVLGPEQAPSCQTGWPPLSGLSPRITFVPADSDFQGILSPKALGLLENGLTA
                     EMKSPRTPYVRLWEEAAYDQSLPDFSHMQMKVMGYSEDPHPVLAPKPGRPQPGASDGG
                     EGGPRDPQALLEAAVVIHRGSDQDEGERDPSQGRPRPPTCPQGPAPLASFQDDLDVDS
                     SEGSSPNLAPSEGAEPRPASPEPQACRCRLDCFHDFALIDAPTLEDVPPEKQLQVAAL
                     PSSWQRPPRTKREEEEASDAGTEEPEQEEEDLYYGLPDSPGDPLPDKELDFEPDAQG"
     misc_feature    501..1076
                     /gene="BSND"
                     /note="Bartter syndrome, infantile, with sensorineural
                     deafness (Barttin); Region: Barttin; pfam15462"
                     /db_xref="CDD:464731"
ORIGIN      
        1 ggcaccttct acgccatggg cggtgtcatg gtgatcgggg gtgtcatctg gaacatgtgc
       61 cagtgctacc ccaaggcttt tcacagtgac aacgataatg atgctgtaga gtgataatga
      121 tcatggtgat ggtgatgaag gcgctggtgc tgatgttgct gcctctgtct gtgccaagaa
      181 acacatgaac tgcttcccac tcactcacca gatgcggatg aagggcctac tccgggtcgg
      241 gcaagtgctg ggcactggat gaggacccct ggaaatgaca agatatgacc tcccccaggg
      301 caggggtgtt cgtctcattc actcatggct gccccctagt gcctagaaga gtgcctggca
      361 cacagctgat gctccgtgag tgctgggtga atgaagagcc agcgagagca ggaacccaga
      421 ggtccagccg gccacaggtg ctgggccctg agcaggcacc ctcctgtcaa acagggtggc
      481 ctcccttgtc aggcctctct cctaggatca ccttcgtacc cgctgactct gacttccaag
      541 gcatcctgtc accgaaggcg ctgggcctgc tggaaaatgg gctcactgct gagatgaaga
      601 gcccccggac cccctacgtc aggctgtggg aggaagccgc ctacgaccag agcctgccgg
      661 acttcagcca catgcagatg aaggtcatgg gctacagtga agacccccac cccgtcctgg
      721 ctcctaagcc gggacggcca cagccaggag ccagcgatgg aggagaaggt ggccctcgcg
      781 accctcaggc cttgttggaa gccgccgtgg tcatacacag gggctcggac caggacgagg
      841 gagaaagaga cccaagtcag ggcaggccca gacccccgac ctgtccccag ggccctgcac
      901 ccttggcttc tttccaagat gacctggacg tggactccag tgagggcagc agtcccaacc
      961 tggcaccatc tgagggggcg gagccccggc ctgcatcccc ggagccccag gcttgcaggt
     1021 gccggctgga ctgcttccat gactttgccc tcattgatgc cccaacgttg gaggatgtgc
     1081 ctccagagaa gcagctacag gtggcagccc tgcccagctc ctggcagaga cccccgagga
     1141 caaagcggga ggaagaggag gcttcggacg caggtacaga ggagccggaa caggaagagg
     1201 aagacttgta ctacgggctt cccgacagcc ctggggaccc ccttccggac aaggaactgg
     1261 actttgagcc cgacgcccag ggctgacatg gaactgctct ctgggtttta gcctggctct
     1321 ggggctaacc ccgatgtgac cacacaggac ttcaatttca ctacctgcaa aatggggtta
     1381 gatggaggtt cacaggagac agtggacccg agagcatttt gagaactgca cagaaatgca
     1441 cagggaggag atgattacat tactgggcca ttgctgctct gattattaat agcttttgta
     1501 aagctctgaa ggtcaaatat gattagttga gaagatctgt agcagccagg gccctcaaga
     1561 gccctttccg cctcccccca gagctggcct ctgaacagga accctgctgg gggctaccct
     1621 cgtgtccccg atcttctgtg aaggcctctc agggttcttg ttcctgttgc atcttttagt
     1681 ccagccgggg gatggcgtga tttgttttca ctcagagcta acgtccccgg cccacatccc
     1741 tcctgtgtct cctgtagctc tgggatccaa caccctccat gagtgacctc tgctgacctc
     1801 ccagctttcg ccctggtcag ccccacccca cgttcaccct gctgccccat gcccttgcca
     1861 agctgtctcc tctgcccgga tgccctttgt cccctgtctg ccgggcacat tcaggctctt
     1921 caaaccactg cacagacgtc cctcttctga aggcttttcc tgatgtcacc gcttctgggc
     1981 cgagttagtc ctggctcccg tgtgccaccc ctgggccatc tctgggcctt gcgcatttat
     2041 catggagcat ggctgcctgc tcaaggtcag cagctttgct ttactcacct cgatctctcc
     2101 tgtgcccggc tggtggtcat tgagcatgta cagaagtgac cagaacccat gag
//
LOCUS       XM_032613470            2207 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus barttin CLCNK type accessory subunit beta
            (BSND), transcript variant X5, mRNA.
ACCESSION   XM_032613470
VERSION     XM_032613470.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2207
                     /gene="BSND"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744111"
     CDS             339..1340
                     /gene="BSND"
                     /codon_start=1
                     /product="barttin isoform X1"
                     /protein_id="XP_032469361.1"
                     /db_xref="GeneID:116744111"
                     /translation="MTSPRAGVFVSFTHGCPLVPRRVPGTQLMLRECWVNEEPARAGT
                     QRSSRPQVLGPEQAPSCQTGWPPLSGLSPRITFVPADSDFQGILSPKALGLLENGLTA
                     EMKSPRTPYVRLWEEAAYDQSLPDFSHMQMKVMGYSEDPHPVLAPKPGRPQPGASDGG
                     EGGPRDPQALLEAAVVIHRGSDQDEGERDPSQGRPRPPTCPQGPAPLASFQDDLDVDS
                     SEGSSPNLAPSEGAEPRPASPEPQACRCRLDCFHDFALIDAPTLEDVPPEKQLQVAAL
                     PSSWQRPPRTKREEEEASDAGTEEPEQEEEDLYYGLPDSPGDPLPDKELDFEPDAQG"
     misc_feature    555..1130
                     /gene="BSND"
                     /note="Bartter syndrome, infantile, with sensorineural
                     deafness (Barttin); Region: Barttin; pfam15462"
                     /db_xref="CDD:464731"
ORIGIN      
        1 gttcatgtgc tgtggaggtc gcatggcggg tcagaaatgg cacaggtttc agtgcccacc
       61 aggccctgac tcaaatgccc ctccctgtgc cccacttctg tgcccttggc agaggctcac
      121 ctgggcctgt ggaggagcca gtgggggctt gtaggtgggg gacttggcat cacgcctggc
      181 ctggagccaa tgcgaaggca gcgttctcag gacagcctct gtctgtgcca agaaacacat
      241 gaactgcttc ccactcactc accagatgcg gatgaagggc ctactccggg tcgggcaagt
      301 gctgggcact ggatgaggac ccctggaaat gacaagatat gacctccccc agggcagggg
      361 tgttcgtctc attcactcat ggctgccccc tagtgcctag aagagtgcct ggcacacagc
      421 tgatgctccg tgagtgctgg gtgaatgaag agccagcgag agcaggaacc cagaggtcca
      481 gccggccaca ggtgctgggc cctgagcagg caccctcctg tcaaacaggg tggcctccct
      541 tgtcaggcct ctctcctagg atcaccttcg tacccgctga ctctgacttc caaggcatcc
      601 tgtcaccgaa ggcgctgggc ctgctggaaa atgggctcac tgctgagatg aagagccccc
      661 ggacccccta cgtcaggctg tgggaggaag ccgcctacga ccagagcctg ccggacttca
      721 gccacatgca gatgaaggtc atgggctaca gtgaagaccc ccaccccgtc ctggctccta
      781 agccgggacg gccacagcca ggagccagcg atggaggaga aggtggccct cgcgaccctc
      841 aggccttgtt ggaagccgcc gtggtcatac acaggggctc ggaccaggac gagggagaaa
      901 gagacccaag tcagggcagg cccagacccc cgacctgtcc ccagggccct gcacccttgg
      961 cttctttcca agatgacctg gacgtggact ccagtgaggg cagcagtccc aacctggcac
     1021 catctgaggg ggcggagccc cggcctgcat ccccggagcc ccaggcttgc aggtgccggc
     1081 tggactgctt ccatgacttt gccctcattg atgccccaac gttggaggat gtgcctccag
     1141 agaagcagct acaggtggca gccctgccca gctcctggca gagacccccg aggacaaagc
     1201 gggaggaaga ggaggcttcg gacgcaggta cagaggagcc ggaacaggaa gaggaagact
     1261 tgtactacgg gcttcccgac agccctgggg acccccttcc ggacaaggaa ctggactttg
     1321 agcccgacgc ccagggctga catggaactg ctctctgggt tttagcctgg ctctggggct
     1381 aaccccgatg tgaccacaca ggacttcaat ttcactacct gcaaaatggg gttagatgga
     1441 ggttcacagg agacagtgga cccgagagca ttttgagaac tgcacagaaa tgcacaggga
     1501 ggagatgatt acattactgg gccattgctg ctctgattat taatagcttt tgtaaagctc
     1561 tgaaggtcaa atatgattag ttgagaagat ctgtagcagc cagggccctc aagagccctt
     1621 tccgcctccc cccagagctg gcctctgaac aggaaccctg ctgggggcta ccctcgtgtc
     1681 cccgatcttc tgtgaaggcc tctcagggtt cttgttcctg ttgcatcttt tagtccagcc
     1741 gggggatggc gtgatttgtt ttcactcaga gctaacgtcc ccggcccaca tccctcctgt
     1801 gtctcctgta gctctgggat ccaacaccct ccatgagtga cctctgctga cctcccagct
     1861 ttcgccctgg tcagccccac cccacgttca ccctgctgcc ccatgccctt gccaagctgt
     1921 ctcctctgcc cggatgccct ttgtcccctg tctgccgggc acattcaggc tcttcaaacc
     1981 actgcacaga cgtccctctt ctgaaggctt ttcctgatgt caccgcttct gggccgagtt
     2041 agtcctggct cccgtgtgcc acccctgggc catctctggg ccttgcgcat ttatcatgga
     2101 gcatggctgc ctgctcaagg tcagcagctt tgctttactc acctcgatct ctcctgtgcc
     2161 cggctggtgg tcattgagca tgtacagaag tgaccagaac ccatgag
//
LOCUS       XM_032613477            2195 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus barttin CLCNK type accessory subunit beta
            (BSND), transcript variant X6, mRNA.
ACCESSION   XM_032613477
VERSION     XM_032613477.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2195
                     /gene="BSND"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744111"
     CDS             372..1328
                     /gene="BSND"
                     /codon_start=1
                     /product="barttin isoform X2"
                     /protein_id="XP_032469368.1"
                     /db_xref="GeneID:116744111"
                     /translation="MADEKTFRIGFIMLGLFLLALGTFLMSHDRPQVYGTFYAMGGVM
                     VIGGVIWNMCQCYPKITFVPADSDFQGILSPKALGLLENGLTAEMKSPRTPYVRLWEE
                     AAYDQSLPDFSHMQMKVMGYSEDPHPVLAPKPGRPQPGASDGGEGGPRDPQALLEAAV
                     VIHRGSDQDEGERDPSQGRPRPPTCPQGPAPLASFQDDLDVDSSEGSSPNLAPSEGAE
                     PRPASPEPQACRCRLDCFHDFALIDAPTLEDVPPEKQLQVAALPSSWQRPPRTKREEE
                     EASDAGTEEPEQEEEDLYYGLPDSPGDPLPDKELDFEPDAQG"
     misc_feature    450..1118
                     /gene="BSND"
                     /note="Bartter syndrome, infantile, with sensorineural
                     deafness (Barttin); Region: Barttin; pfam15462"
                     /db_xref="CDD:464731"
ORIGIN      
        1 cagcttggcc ctgaacaggc aaatgaggtg atgtcaaagc cttggctgag gcccagcccc
       61 tggaacctcc ccttccttcc ctcgtgtctc cctcactcag attcccacac actccggagg
      121 gcccagaggg aaggtgagag ggagtgaagg tgggagcacg tgaccaccca agtgtagctc
      181 ctccagcctg gaaaacgggt gttcccgggg gctgagctgg acccgaaggg aggctccctc
      241 cctctttcct gaagccctga tctgcagcga tccctgagcg tcactcctcc ggtgttagcg
      301 tgtgcagagg ccggctggtt cattggcgcc cctctgcggg tggtgcacag gccaggcctg
      361 gccaggcagc gatggctgat gagaagacct tccgcatcgg cttcatcatg ctggggctct
      421 tcctgctggc cctcggcacg ttcctcatga gccacgaccg gccccaggtc tacggcacct
      481 tctacgccat gggcggtgtc atggtgatcg ggggtgtcat ctggaacatg tgccagtgct
      541 accccaagat caccttcgta cccgctgact ctgacttcca aggcatcctg tcaccgaagg
      601 cgctgggcct gctggaaaat gggctcactg ctgagatgaa gagcccccgg accccctacg
      661 tcaggctgtg ggaggaagcc gcctacgacc agagcctgcc ggacttcagc cacatgcaga
      721 tgaaggtcat gggctacagt gaagaccccc accccgtcct ggctcctaag ccgggacggc
      781 cacagccagg agccagcgat ggaggagaag gtggccctcg cgaccctcag gccttgttgg
      841 aagccgccgt ggtcatacac aggggctcgg accaggacga gggagaaaga gacccaagtc
      901 agggcaggcc cagacccccg acctgtcccc agggccctgc acccttggct tctttccaag
      961 atgacctgga cgtggactcc agtgagggca gcagtcccaa cctggcacca tctgaggggg
     1021 cggagccccg gcctgcatcc ccggagcccc aggcttgcag gtgccggctg gactgcttcc
     1081 atgactttgc cctcattgat gccccaacgt tggaggatgt gcctccagag aagcagctac
     1141 aggtggcagc cctgcccagc tcctggcaga gacccccgag gacaaagcgg gaggaagagg
     1201 aggcttcgga cgcaggtaca gaggagccgg aacaggaaga ggaagacttg tactacgggc
     1261 ttcccgacag ccctggggac ccccttccgg acaaggaact ggactttgag cccgacgccc
     1321 agggctgaca tggaactgct ctctgggttt tagcctggct ctggggctaa ccccgatgtg
     1381 accacacagg acttcaattt cactacctgc aaaatggggt tagatggagg ttcacaggag
     1441 acagtggacc cgagagcatt ttgagaactg cacagaaatg cacagggagg agatgattac
     1501 attactgggc cattgctgct ctgattatta atagcttttg taaagctctg aaggtcaaat
     1561 atgattagtt gagaagatct gtagcagcca gggccctcaa gagccctttc cgcctccccc
     1621 cagagctggc ctctgaacag gaaccctgct gggggctacc ctcgtgtccc cgatcttctg
     1681 tgaaggcctc tcagggttct tgttcctgtt gcatctttta gtccagccgg gggatggcgt
     1741 gatttgtttt cactcagagc taacgtcccc ggcccacatc cctcctgtgt ctcctgtagc
     1801 tctgggatcc aacaccctcc atgagtgacc tctgctgacc tcccagcttt cgccctggtc
     1861 agccccaccc cacgttcacc ctgctgcccc atgcccttgc caagctgtct cctctgcccg
     1921 gatgcccttt gtcccctgtc tgccgggcac attcaggctc ttcaaaccac tgcacagacg
     1981 tccctcttct gaaggctttt cctgatgtca ccgcttctgg gccgagttag tcctggctcc
     2041 cgtgtgccac ccctgggcca tctctgggcc ttgcgcattt atcatggagc atggctgcct
     2101 gctcaaggtc agcagctttg ctttactcac ctcgatctct cctgtgcccg gctggtggtc
     2161 attgagcatg tacagaagtg accagaaccc atgag
//
LOCUS       XM_032613488            2733 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus barttin CLCNK type accessory subunit beta
            (BSND), transcript variant X7, mRNA.
ACCESSION   XM_032613488
VERSION     XM_032613488.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2733
                     /gene="BSND"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744111"
     CDS             934..1866
                     /gene="BSND"
                     /codon_start=1
                     /product="barttin isoform X3"
                     /protein_id="XP_032469379.1"
                     /db_xref="GeneID:116744111"
                     /translation="MTSPRAGVFVSFTHGCPLVPRRVPGTQLMLRECWVNEEPARAGT
                     QRSSRPQITFVPADSDFQGILSPKALGLLENGLTAEMKSPRTPYVRLWEEAAYDQSLP
                     DFSHMQMKVMGYSEDPHPVLAPKPGRPQPGASDGGEGGPRDPQALLEAAVVIHRGSDQ
                     DEGERDPSQGRPRPPTCPQGPAPLASFQDDLDVDSSEGSSPNLAPSEGAEPRPASPEP
                     QACRCRLDCFHDFALIDAPTLEDVPPEKQLQVAALPSSWQRPPRTKREEEEASDAGTE
                     EPEQEEEDLYYGLPDSPGDPLPDKELDFEPDAQG"
     misc_feature    1081..1656
                     /gene="BSND"
                     /note="Bartter syndrome, infantile, with sensorineural
                     deafness (Barttin); Region: Barttin; pfam15462"
                     /db_xref="CDD:464731"
ORIGIN      
        1 ggcaccttct acgccatggg cggtgtcatg gtgatcgggg gtgtcatctg gaacatgtgc
       61 cagtgctacc ccaaggcttt tcacagtgac aacgataatg atgctgtaga gtgataatga
      121 tcatggtgat ggtgatgaag gcgctggtgc tgatgttgct ggtgatgatg taattatgat
      181 gttgatggag atgatggtgg tagtggtgat tatgatgatg gggagatgga ggaaggggca
      241 gcttctagga aatacagagt cagctggcag gtgcaggaca tactaagtgg gtgtggaaga
      301 tacccaggcc cctccctcat ttccagacat ctgggggaag cttactcctc acaggagttc
      361 taagaacaca tccatctatc attcccttct ccccagcagg attgggtgct ttcctggtgc
      421 agacaagtgt ctttctctca ccgtactcta cgggaaaggg agaaaagggg ctgccattta
      481 tgaacctggc ataacacaat agggtctcat caaatatttg ttgaacaaat tttcagctgg
      541 ggagaaccag acttagagaa gtcaggtaac ttcatcttca gtagcatcaa actatgattt
      601 actgagcagc tactgtgtgc caggctctgt gctaggggac tccttatatg ttatctcatg
      661 gaatccagga gacaggcatt actagtacta cttttttaaa ttgtaaaata tacataacat
      721 aaaatttacc atcttaaccg tttttaagtg aacagttcag tagtgtgggc acaacatcag
      781 ccatccactt ctctgtcctc cccaccgcag cctctgtctg tgccaagaaa cacatgaact
      841 gcttcccact cactcaccag atgcggatga agggcctact ccgggtcggg caagtgctgg
      901 gcactggatg aggacccctg gaaatgacaa gatatgacct cccccagggc aggggtgttc
      961 gtctcattca ctcatggctg ccccctagtg cctagaagag tgcctggcac acagctgatg
     1021 ctccgtgagt gctgggtgaa tgaagagcca gcgagagcag gaacccagag gtccagccgg
     1081 ccacagatca ccttcgtacc cgctgactct gacttccaag gcatcctgtc accgaaggcg
     1141 ctgggcctgc tggaaaatgg gctcactgct gagatgaaga gcccccggac cccctacgtc
     1201 aggctgtggg aggaagccgc ctacgaccag agcctgccgg acttcagcca catgcagatg
     1261 aaggtcatgg gctacagtga agacccccac cccgtcctgg ctcctaagcc gggacggcca
     1321 cagccaggag ccagcgatgg aggagaaggt ggccctcgcg accctcaggc cttgttggaa
     1381 gccgccgtgg tcatacacag gggctcggac caggacgagg gagaaagaga cccaagtcag
     1441 ggcaggccca gacccccgac ctgtccccag ggccctgcac ccttggcttc tttccaagat
     1501 gacctggacg tggactccag tgagggcagc agtcccaacc tggcaccatc tgagggggcg
     1561 gagccccggc ctgcatcccc ggagccccag gcttgcaggt gccggctgga ctgcttccat
     1621 gactttgccc tcattgatgc cccaacgttg gaggatgtgc ctccagagaa gcagctacag
     1681 gtggcagccc tgcccagctc ctggcagaga cccccgagga caaagcggga ggaagaggag
     1741 gcttcggacg caggtacaga ggagccggaa caggaagagg aagacttgta ctacgggctt
     1801 cccgacagcc ctggggaccc ccttccggac aaggaactgg actttgagcc cgacgcccag
     1861 ggctgacatg gaactgctct ctgggtttta gcctggctct ggggctaacc ccgatgtgac
     1921 cacacaggac ttcaatttca ctacctgcaa aatggggtta gatggaggtt cacaggagac
     1981 agtggacccg agagcatttt gagaactgca cagaaatgca cagggaggag atgattacat
     2041 tactgggcca ttgctgctct gattattaat agcttttgta aagctctgaa ggtcaaatat
     2101 gattagttga gaagatctgt agcagccagg gccctcaaga gccctttccg cctcccccca
     2161 gagctggcct ctgaacagga accctgctgg gggctaccct cgtgtccccg atcttctgtg
     2221 aaggcctctc agggttcttg ttcctgttgc atcttttagt ccagccgggg gatggcgtga
     2281 tttgttttca ctcagagcta acgtccccgg cccacatccc tcctgtgtct cctgtagctc
     2341 tgggatccaa caccctccat gagtgacctc tgctgacctc ccagctttcg ccctggtcag
     2401 ccccacccca cgttcaccct gctgccccat gcccttgcca agctgtctcc tctgcccgga
     2461 tgccctttgt cccctgtctg ccgggcacat tcaggctctt caaaccactg cacagacgtc
     2521 cctcttctga aggcttttcc tgatgtcacc gcttctgggc cgagttagtc ctggctcccg
     2581 tgtgccaccc ctgggccatc tctgggcctt gcgcatttat catggagcat ggctgcctgc
     2641 tcaaggtcag cagctttgct ttactcacct cgatctctcc tgtgcccggc tggtggtcat
     2701 tgagcatgta cagaagtgac cagaacccat gag
//
LOCUS       XM_032613494            1612 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class C (PIGC), transcript variant X1, mRNA.
ACCESSION   XM_032613494
VERSION     XM_032613494.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1612
                     /gene="PIGC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 5 long SRA reads, 11
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744136"
     CDS             427..1320
                     /gene="PIGC"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit C"
                     /protein_id="XP_032469385.1"
                     /db_xref="GeneID:116744136"
                     /translation="MCAQPVTNTKEARWQKVLYERQPFPDNYVDQSFLEELRKNIYAR
                     KYQYWAVVFESSVVIQQLCSVCVFVVIWWYMDEGLLAPHWLFGTGLASSLIGYVLFDL
                     IDGGEGRKKSGRTRWADLKSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGH
                     LIFFDYGANGAIVSSTLSLNMAIFASVCLASRLPRSLHAFVMVTFAIQIFALWPMLQK
                     KLKACTPHSYVGVTLLFAFSALGGLLSISAVGAILFALLLVSISCLCPFYLIRLQLFK
                     ENIHGPWDEAEIKEDLSRFLS"
     misc_feature    466..1278
                     /gene="PIGC"
                     /note="Phosphatidylinositol
                     N-acetylglucosaminyltransferase; Region: GPI2; pfam06432"
                     /db_xref="CDD:428940"
ORIGIN      
        1 ttctttacgg gataggagcc ggaagttcct ctgagcggcc aggagggagc agcagcggcc
       61 gcgaaggccg aggaagggct gctctaaccg cggaggttgt ggcagtcccg gaagtgctcg
      121 gccgccgaca cgaccccggc gccccggatg gggaaggagg cgggcgggcc gctctcccgc
      181 tgccgcgcac ccctacgaac tcgcgggcag gaacttagct gtattgtcct gcctcagaga
      241 acaaactcat ctactgtagg cctagcctgg gttgctgcct ttgaaagcaa gggaaagtcg
      301 gtacaatatc acccacagct cagcatggaa tttccagaga ggttttattt caaaactata
      361 aagattgaga accacatgga cttctgcaag ggagattgaa ctagcctgag tttgagcgaa
      421 aggataatgt gtgcccagcc tgtaactaac accaaagagg ccagatggca gaaggtcttg
      481 tatgagcgac agccttttcc tgataactac gtggatcaga gtttcctgga agagctccgg
      541 aagaacatct atgcccggaa ataccaatat tgggctgtgg tatttgagtc cagtgtggtg
      601 atacagcagc tgtgcagtgt ctgtgttttt gtggttatct ggtggtatat ggatgagggt
      661 cttctggctc cccattggct ttttgggacc ggcctggctt cttcactgat tggctatgtt
      721 ttgtttgatc tcattgatgg aggtgaagga cggaagaaga gtgggcggac ccggtgggct
      781 gacttgaaga gtgccctagt cttcataact ttcacatatg gcttttcgcc ggtgctgaag
      841 actctgacag agtccgtcag cactgacacc atctatgcca tgtcagtctt catgctgtta
      901 ggccacctca tcttctttga ctatggtgcc aatggtgcca ttgtatccag cacactgtcc
      961 ttgaacatgg ccatctttgc ttctgtctgc cttgcctcac gcctgccccg gtccctacat
     1021 gccttcgtca tggtgacatt tgccatccag atttttgccc tatggcccat gttacagaag
     1081 aaactgaagg catgtactcc ccacagctat gtgggagtca cactgctttt tgcattttca
     1141 gccttgggag gcctgctgtc cattagtgct gtgggagcca tactctttgc ccttctgctg
     1201 gtttccatct catgtctctg ccctttctac ctcattcgcc tgcagctttt taaagaaaac
     1261 attcatgggc cttgggatga ggctgaaatc aaagaagact tgtcaaggtt cctcagctga
     1321 gttagggacc tccattccgt tactgagaca agctgataga ccagccttcc aactagtagg
     1381 agatttgaag gcagagttcc attctggaag tggcataatg atgtgggtgg gagatcagaa
     1441 atcaaaagaa aaaaattacc cataggcttg ggcagtgaag gtgcttctcc tttctgttac
     1501 tttgttgatg aaaaagcttc ctggggccct cttgaattat tgcctctcat tattattctc
     1561 tgtaacaaat gaaatgatgt ggtttctatt tattaaaaaa gtaacatcca tc
//
LOCUS       XM_032613502            1511 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphatidylinositol glycan anchor
            biosynthesis class C (PIGC), transcript variant X2, mRNA.
ACCESSION   XM_032613502
VERSION     XM_032613502.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1511
                     /gene="PIGC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744136"
     CDS             328..1221
                     /gene="PIGC"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit C"
                     /protein_id="XP_032469393.1"
                     /db_xref="GeneID:116744136"
                     /translation="MCAQPVTNTKEARWQKVLYERQPFPDNYVDQSFLEELRKNIYAR
                     KYQYWAVVFESSVVIQQLCSVCVFVVIWWYMDEGLLAPHWLFGTGLASSLIGYVLFDL
                     IDGGEGRKKSGRTRWADLKSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGH
                     LIFFDYGANGAIVSSTLSLNMAIFASVCLASRLPRSLHAFVMVTFAIQIFALWPMLQK
                     KLKACTPHSYVGVTLLFAFSALGGLLSISAVGAILFALLLVSISCLCPFYLIRLQLFK
                     ENIHGPWDEAEIKEDLSRFLS"
     misc_feature    367..1179
                     /gene="PIGC"
                     /note="Phosphatidylinositol
                     N-acetylglucosaminyltransferase; Region: GPI2; pfam06432"
                     /db_xref="CDD:428940"
ORIGIN      
        1 gagggggctc tcagggtgtc tggcttgtga tgcaaaacct atcgtgctct ctgtagaaga
       61 aattaggtcg ggcaataaga attttcctcg cagacttgct ggatgaactt ggaacttagc
      121 tgtattgtcc tgcctcagag aacaaactca tctactgtag gcctagcctg ggttgctgcc
      181 tttgaaagca agggaaagtc ggtacaatat cacccacagc tcagcatgga atttccagag
      241 aggttttatt tcaaaactat aaagattgag aaccacatgg acttctgcaa gggagattga
      301 actagcctga gtttgagcga aaggataatg tgtgcccagc ctgtaactaa caccaaagag
      361 gccagatggc agaaggtctt gtatgagcga cagccttttc ctgataacta cgtggatcag
      421 agtttcctgg aagagctccg gaagaacatc tatgcccgga aataccaata ttgggctgtg
      481 gtatttgagt ccagtgtggt gatacagcag ctgtgcagtg tctgtgtttt tgtggttatc
      541 tggtggtata tggatgaggg tcttctggct ccccattggc tttttgggac cggcctggct
      601 tcttcactga ttggctatgt tttgtttgat ctcattgatg gaggtgaagg acggaagaag
      661 agtgggcgga cccggtgggc tgacttgaag agtgccctag tcttcataac tttcacatat
      721 ggcttttcgc cggtgctgaa gactctgaca gagtccgtca gcactgacac catctatgcc
      781 atgtcagtct tcatgctgtt aggccacctc atcttctttg actatggtgc caatggtgcc
      841 attgtatcca gcacactgtc cttgaacatg gccatctttg cttctgtctg ccttgcctca
      901 cgcctgcccc ggtccctaca tgccttcgtc atggtgacat ttgccatcca gatttttgcc
      961 ctatggccca tgttacagaa gaaactgaag gcatgtactc cccacagcta tgtgggagtc
     1021 acactgcttt ttgcattttc agccttggga ggcctgctgt ccattagtgc tgtgggagcc
     1081 atactctttg cccttctgct ggtttccatc tcatgtctct gccctttcta cctcattcgc
     1141 ctgcagcttt ttaaagaaaa cattcatggg ccttgggatg aggctgaaat caaagaagac
     1201 ttgtcaaggt tcctcagctg agttagggac ctccattccg ttactgagac aagctgatag
     1261 accagccttc caactagtag gagatttgaa ggcagagttc cattctggaa gtggcataat
     1321 gatgtgggtg ggagatcaga aatcaaaaga aaaaaattac ccataggctt gggcagtgaa
     1381 ggtgcttctc ctttctgtta ctttgttgat gaaaaagctt cctggggccc tcttgaatta
     1441 ttgcctctca ttattattct ctgtaacaaa tgaaatgatg tggtttctat ttattaaaaa
     1501 agtaacatcc a
//
LOCUS       XM_032613513             480 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 1 C1orf105 homolog
            (C1H1orf105), mRNA.
ACCESSION   XM_032613513
VERSION     XM_032613513.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..480
                     /gene="C1H1orf105"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 66% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744147"
     CDS             115..480
                     /gene="C1H1orf105"
                     /codon_start=1
                     /product="uncharacterized protein C1orf105 homolog"
                     /protein_id="XP_032469404.1"
                     /db_xref="GeneID:116744147"
                     /translation="MADVGVSIPRAQLYPFPTKARQRDRVGALQEGLQMSSCWSWEHR
                     LLTRYVRMMSLHPPKAQTVPKRPRDDIPTEGARYRLPILGPRTAVSHGLLSDAYNTLQ
                     DMQLSSLPRKEPVGKTMRQ"
     misc_feature    <265..474
                     /gene="C1H1orf105"
                     /note="Domain of unknown function (DUF4548); Region:
                     DUF4548; pfam15081"
                     /db_xref="CDD:373540"
ORIGIN      
        1 ccaaagtgaa ggcgtgagaa aagagggcag ggaggaaccg gagagacccc acgctgatca
       61 gaaacaagca gctgtgctcc acgtgtcgag aaatgaaaac ggtagtcgtg gaggatggca
      121 gacgtgggcg tgagcatccc cagggcacag ctctacccct tccccaccaa agcccggcag
      181 agagaccgtg tcggggcctt gcaggaaggg ctgcagatga gcagctgctg gtcctgggaa
      241 caccgtctcc tgacacgata tgtcagaatg atgagccttc atccaccaaa ggcccagacc
      301 gtacccaaac gtcctcgtga tgacatccca acagagggcg ctcgctacag actgcccatt
      361 ctgggcccca gaacagctgt ctcccatgga ctgctgtcag atgcctacaa cactctgcag
      421 gacatgcaac tctcttcctt gcccagaaag gaaccagtgg gcaagacaat gaggcagtga
//
LOCUS       XM_032613525            1432 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glutathione peroxidase 7 (GPX7), mRNA.
ACCESSION   XM_032613525
VERSION     XM_032613525.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1432
                     /gene="GPX7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 long SRA reads, 7
                     Proteins, and 91% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744156"
     CDS             113..838
                     /gene="GPX7"
                     /codon_start=1
                     /product="glutathione peroxidase 7"
                     /protein_id="XP_032469416.1"
                     /db_xref="GeneID:116744156"
                     /translation="MGRLRSRVRLSTARGEGGASCPSGRLEPGPPPPAPRARDPSPAF
                     AFATPPARERVMVAGLAAAWLLLAAAACAQREQDFYDFKAVNIRGKLVSLEKYRGSVS
                     LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPNSNKEIENFARR
                     TYSVSFPMFSKITVTGTGAHPAFKYLIQTSGKEPTWNFWKYLVAPDGKVIGAWDPTMS
                     VEELRPQITALVRKLILKKREDL"
     misc_feature    344..802
                     /gene="GPX7"
                     /note="putative glutathione peroxidase Gpx7; Region: gpx7;
                     TIGR02540"
                     /db_xref="CDD:131592"
     misc_feature    order(443..445,548..550,698..700)
                     /gene="GPX7"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:238207"
     misc_feature    order(545..547,554..556,560..562,569..571,578..580,
                     590..592)
                     /gene="GPX7"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238207"
ORIGIN      
        1 ggagcaagag ggagcctcat tgaaacgaat tccggtctca gtgggcagaa tcctgacacc
       61 acggctctag ggtccggaaa ggggcgcgga gtccaacgct cccgcagtac agatggggag
      121 actgaggtcc agagtccggc tgtccaccgc ccgcggagaa gggggcgcgt cctgcccgtc
      181 tggccgcttg gagccggggc cgcctcctcc cgccccccgc gcccgtgacc ccagccctgc
      241 ctttgccttt gccacgccgc ctgctcggga gcgagtcatg gtggcgggac tggcggcagc
      301 atggctgctc ctggcggctg cggcctgcgc gcagcgggag caggacttct acgacttcaa
      361 ggcggtcaac atccggggca agttggtgtc tctggagaag taccgcggct cggtgtccct
      421 ggtggtgaac gtggctagcg agtgtggctt cacagaccag cactaccggg ccctgcaaca
      481 gctacagcgg gacctggggc ctcaccactt caacgtgctt gcctttccct gcaaccagtt
      541 tggccagcag gagcccaaca gcaacaagga gattgagaac tttgcccgcc gcacctacag
      601 tgtctctttc cccatgttta gcaagatcac agtcaccggc actggtgccc accctgcctt
      661 caagtacctg atccagactt ctggaaagga gcccacctgg aacttctgga agtacctagt
      721 ggccccagat ggaaaggtga taggggcttg ggacccaacc atgtcggtgg aggagttaag
      781 gccccagatt accgcgcttg tgaggaagct catcctgaag aagagagaag acttgtaact
      841 actttccctc ctctcccact gtcccctccc ctcactgttc acgagtgacc aaagcaaact
      901 caaatggtgc tacgagggag agaccactga ctctccttcc tccactctta tcccacctac
      961 cccatcactc ctgtctgggg aaaattctag tagtttgatt atttgaatct tagagcaacc
     1021 tgtaagaacc cctgaccagt gacagctctt gaccaatgac tcaacaacca ataagaacct
     1081 ctagcccctg aaaacatgtg gcaaatagag gtacaagcaa taatctccta cctgttatga
     1141 actctctaaa atgaggccaa ttcctacctc acagggctgt tgcgagattg aggatgaaag
     1201 gcctacgaaa gtgcctaggg cagtgccagg taactaggag gcgttcaata aatgtttttt
     1261 gcatacgaac caaaaaataa gttgtgatca ataaaaactt gaacccaaca tgaatttcca
     1321 gccatgagaa tccaggccaa acatttgttg ttgttattgt tttcctatgt atttttttca
     1381 attacaaaag taatacaaat tcattgtaaa ataagatgat acaaaataaa aa
//
LOCUS       XM_032613561             306 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus signal recognition particle 14 kDa
            protein-like (LOC116744175), mRNA.
ACCESSION   XM_032613561
VERSION     XM_032613561.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..306
                     /gene="LOC116744175"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 63% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744175"
     CDS             1..306
                     /gene="LOC116744175"
                     /codon_start=1
                     /product="signal recognition particle 14 kDa protein-like"
                     /protein_id="XP_032469452.1"
                     /db_xref="GeneID:116744175"
                     /translation="MVLLEREQFLTELTRLFQKRRLSGSVCITLKKYDGRAKPIPRKG
                     FEPSENKCLLRATGGKKISTGVSSKEVNTFQMACSNLLRANMDGLKKSQSKKSKAAQ"
     misc_feature    10..267
                     /gene="LOC116744175"
                     /note="Signal recognition particle 14kD protein; Region:
                     SRP14; pfam02290"
                     /db_xref="CDD:460524"
ORIGIN      
        1 atggtgcttc tggagagaga gcagttcctg acggagctga ccaggctctt ccagaagcgc
       61 cggttgtcgg gcagcgtgtg catcaccctg aagaagtatg atggtcgagc taaacccatt
      121 ccaaggaagg gctttgagcc ctcagaaaac aagtgtctgt taagagctac tggtgggaaa
      181 aagatcagca ctggggtgag ctccaaagaa gtgaatacgt ttcagatggc ttgttcaaac
      241 ctattgagag ctaacatgga tgggctgaaa aagagccaga gtaagaagag caaagcagcg
      301 cagtga
//
LOCUS       XM_032613573            1808 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphoglycerate kinase 1-like
            (LOC116744184), mRNA.
ACCESSION   XM_032613573
VERSION     XM_032613573.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-149               VOSU01000011.1     84499343-84499491   c
            150-304             VOSU01000011.1     84481004-84481158   c
            305-760             VOSU01000011.1     84478733-84479188   c
            761-1808            VOSU01000011.1     84477683-84478730   c
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1808
                     /gene="LOC116744184"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 32 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744184"
     CDS             122..1384
                     /gene="LOC116744184"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:758..760,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: phosphoglycerate kinase
                     1-like"
                     /protein_id="XP_032469464.1"
                     /db_xref="GeneID:116744184"
                     /translation="MALCHQPVKIKLSPVIQAICAGGPHRMVEHTSLPFLVMLSWPGS
                     TLSLPLSCLMLLVLQIQLADLGLPDGVPMPDKYSWQPAAVELKSLLGKDVLFLKDCVG
                     PEVEKACADTAAGSVILLENLCLHVEEEGKGKDASGNKVKAEPAKVEAFQASSSKLED
                     VYVNDAFGTAHRAHSSMVGVNLPEKAGGILMKKELDCFAQALESPERPFLAIXWGGAK
                     VADKIQLINNMLDKVSEMIIGGGMAFTFLNVLNNMEMGTSLFDEEGSKIIKDLISEAE
                     KNGVQITLPVDFVTAVKFDENAKTGRATVPSGIPAGWMGLDCGPESSKKYAEAVARAK
                     QAVWNGPVGVFEWEAFARGTKALMHEVVKATSRGCITIIGGGDTATCCAKWNTEDKVS
                     HVSTGGGASLELLEGEVLPGVVDALGNV"
     misc_feature    314..1378
                     /gene="LOC116744184"
                     /note="Phosphoglycerate kinase (PGK) is a monomeric enzyme
                     which catalyzes the transfer of the high-energy phosphate
                     group of 1,3-bisphosphoglycerate to ADP, forming ATP and
                     3-phosphoglycerate. This reaction represents the first of
                     the two substrate-level...; Region:
                     Phosphoglycerate_kinase; cl00198"
                     /db_xref="CDD:444741"
     misc_feature    order(725..736,1301..1309)
                     /gene="LOC116744184"
                     /note="hinge regions; other site"
                     /db_xref="CDD:238195"
     misc_feature    order(842..844,1064..1066,1136..1138,1142..1144,
                     1148..1159,1247..1255)
                     /gene="LOC116744184"
                     /note="ADP binding site [chemical binding]; other site"
                     /db_xref="CDD:238195"
     misc_feature    1250..1252
                     /gene="LOC116744184"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238195"
ORIGIN      
        1 tgtaacttgg cagggtccca catacttcag accggattag ggttggactc ctaagtgccg
       61 tgcctcacta cttgaaaatc ccacgaaaga gctggagcct cgttctgggc agcagtggac
      121 aatggctctt tgtcaccagc cagtgaagat caagttgtca ccagtgatac aagcgatttg
      181 tgctggtggg ccccaccgga tggtggagca cacctccctg ccttttctcg tgatgctgtc
      241 ttggcctgga agcacccttt cccttcctct tagctgccta atgctacttg ttctccagat
      301 tcagttggct gacctgggcc tgcctgatgg tgtccccatg cctgacaagt actcctggca
      361 accagctgct gtagaactca aatctctgct gggcaaggat gttttgttct tgaaggactg
      421 cgtgggccca gaagtggaga aagcttgtgc tgacacagct gctggctctg tcatcctgct
      481 ggagaacctt tgccttcatg tggaggaaga agggaaggga aaagatgctt ctgggaacaa
      541 ggttaaagct gagccagcca aagtagaggc cttccaagct tcgtcttcca agctagagga
      601 tgtctatgtc aatgatgctt ttggcactgc tcaccgagcc cacagctcca tggtgggagt
      661 aaatctgcca gagaaggctg gaggtatttt gatgaagaag gagctggact gctttgccca
      721 ggccttggag agcccagagc gacccttcct ggccatctaa tggggcggag ctaaagttgc
      781 agacaagatc cagctgatca ataatatgct ggacaaagtc agcgagatga ttattggtgg
      841 tggaatggcc tttaccttcc ttaatgtgct caacaacatg gagatgggca cttctctgtt
      901 tgacgaagag ggatccaaga tcatcaaaga cctgatatcc gaagctgaga agaatggtgt
      961 gcagattacc ttgcctgttg actttgtcac tgctgttaag tttgatgaga atgccaagac
     1021 tggccgagcc actgtgccct ctggcatacc tgctggctgg atgggcttgg actgcggtcc
     1081 tgagagcagc aaaaagtatg ctgaggctgt tgctcgggct aagcaggccg tgtggaatgg
     1141 acctgtgggc gtgtttgaat gggaagcttt tgcccgagga accaaagccc tcatgcatga
     1201 ggtggtgaaa gccacttcca ggggctgcat caccatcata ggtgggggag acactgctac
     1261 ttgctgtgcc aaatggaaca cggaggataa agtcagccac gtgagcaccg gaggtggggc
     1321 cagcttagag ctcctggagg gtgaagtcct tcctggggtg gtggatgctc tcggcaatgt
     1381 ttagtacttt cctgcctttt ggttcctgtg catagcccct aagtcaactt agtgcttcct
     1441 gcatctccac ttggcattag ctaatatctt cccccatgtc aagatttggc tagtggccaa
     1501 gagatacagc gccaggaacc cttaaacagt tgtacggcat ctcagctcac ctttaccgca
     1561 ccctggattt gcctacattg ttcaagttcc catttgaatt tcttagagac taaaccattg
     1621 tgcattctag agtgcgtata tttatattat gcctgtgaaa agaaagtgag gtgtgttagc
     1681 tcagttctct ttatgaagta gcttattctg gttagctttg tcattgtttc accactcagc
     1741 atggaaacaa aatgaaatgc caattgttgg tagggaggga gatgaagttg gtgatctatt
     1801 aaacaaat
//
LOCUS       XM_032613599            2170 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major facilitator superfamily domain
            containing 2A (MFSD2A), transcript variant X1, mRNA.
ACCESSION   XM_032613599
VERSION     XM_032613599.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2170
                     /gene="MFSD2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744195"
     CDS             167..1756
                     /gene="MFSD2A"
                     /codon_start=1
                     /product="sodium-dependent lysophosphatidylcholine
                     symporter 1 isoform X1"
                     /protein_id="XP_032469490.1"
                     /db_xref="GeneID:116744195"
                     /translation="MAKGEGAESGSAAGLLPTGILQAGERPVQVKKESKKKNQLSICN
                     KLCYAVGGTPYQVTGCALGFFLQIYLLDVAQVDPFSASIILFVGRAWDAITDPLVGFC
                     ISKSPWTRLGRLMPWIIFSTPLAIIAYFLIWFVPDFQQGQTLWYLLFYCLFETLVTCF
                     HVPYSALTMFISTEQSERDSATAYRMTVEVLGTVLGTAIQGQIVGQAHTPCVQDANAS
                     TVALEGVNRTQSATSLRETQNAYLLAAGVIASIYVICAVILTLGVREQREPYETQQAK
                     PMPFFRGLRLVMSHGPYIKLIAGFLFTSLAFMLVEGNFALFCTYTLGFRNEFQNLLLA
                     IMFSATVTIPIWQWFLTRFGKKMAVYIGISSAVPFLILVALMESNLIVTYVVAVAAGI
                     SVAAAFLLPWSMLPDVIDDFHLKQPHIHGTEPIFFSFYVFFTKFASGVSLGISTLSLD
                     FTGYQTRGCSQPARVKFTLKMLVTMAPIVLILVGLLLFKLYPIDEEKRRQNKKALQAL
                     REEASSSGCSDTDSTELARIL"
     misc_feature    299..1651
                     /gene="MFSD2A"
                     /note="Sodium-dependent lysophosphatidylcholine symporter
                     1 of the Major Facilitator Superfamily of transporters;
                     Region: MFS_NLS1_MFSD2A; cd17451"
                     /db_xref="CDD:341009"
     misc_feature    order(329..334,341..346,353..355,452..454,635..640,
                     644..652,659..661,722..724,731..736,743..745,1064..1066,
                     1073..1078,1085..1093,1100..1102,1184..1186,1196..1198,
                     1343..1348,1358..1360,1370..1372,1445..1447,1454..1459,
                     1466..1471,1478..1480)
                     /gene="MFSD2A"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341009"
ORIGIN      
        1 aggcgcgtgg ggagtgcagt gagcgagtca gcggcgttcg tagcggcggc ggcggctaca
       61 actaccacgc gagcccgggc ggagcggagg cccgcggagc agaagaacat cgcggagcag
      121 aggaacatcc cggcttcccg gcccggggcg gcgtggcccg cggctcatgg ccaaaggaga
      181 gggcgccgag agcggctccg ccgcggggct gctgcccacg ggcatcctcc aagccggtga
      241 acgcccggtc caggtgaaga aggagtcgaa gaagaaaaac cagttgtcca tttgcaacaa
      301 actttgctat gcagttgggg ggacccccta ccaggtgaca ggttgtgccc tggggttctt
      361 cctgcagatc tacctgttgg atgtagctca ggtggatcct ttctctgctt ccatcatcct
      421 gtttgtgggc cgagcttggg atgccatcac agaccccctg gtgggcttct gcattagcaa
      481 atccccctgg acccgtctag gccgccttat gccctggatc atcttctcca cgcccctggc
      541 catcatcgcc tacttcctca tctggttcgt gcctgacttc caacagggcc agaccctgtg
      601 gtacttgctt ttctactgcc tctttgagac gctggtcacg tgtttccacg ttccctactc
      661 agctctcacc atgtttatca gcacggaaca gagtgagcgg gattctgcca ctgcgtatcg
      721 gatgaccgtg gaggtattag gtacagtgct gggcacagca atccaggggc agattgtggg
      781 ccaagcacat acaccttgtg tccaggacgc caatgcctct acagtagcct tggaaggtgt
      841 caatcgcacg cagagcgcca cctcactcag agaaacgcaa aacgcatacc tactggcggc
      901 aggggtcatt gcctccatct atgtcatctg tgctgtcatc ctgaccctgg gcgtgcggga
      961 gcagagagaa ccctacgaga ctcagcaggc caagccgatg cccttctttc ggggcctccg
     1021 gctggtcatg agccatggcc cgtacatcaa gcttattgcc ggcttcctct tcacctcctt
     1081 ggctttcatg ctggtggagg ggaacttcgc tctgttttgc acctacacct tgggttttcg
     1141 taacgaattc cagaatctgc tcctggccat catgttctcg gccacagtca ccatccccat
     1201 ctggcagtgg ttcctaaccc ggtttggcaa gaagatggct gtgtacattg ggatctcatc
     1261 agcagtgcca tttctcatct tggtggccct catggagagt aacctgattg tcacatatgt
     1321 ggtagctgtg gcagctggca tcagtgtagc agctgccttc ttactaccct ggtccatgct
     1381 gcctgacgtc attgatgact tccacttgaa gcagccccat atccatggga ccgagcccat
     1441 cttcttctcc ttctatgtct tcttcaccaa gtttgcctcc ggagtctccc tgggcatctc
     1501 caccctcagt ctggacttta ctgggtacca gacccgtggc tgctcccagc cagcacgtgt
     1561 caagttcaca ctgaagatgc tggtgaccat ggctcccata gtcctcatcc tcgtaggcct
     1621 gctgctcttt aagctgtacc ccattgacga ggagaagcgg cggcagaaca agaaggccct
     1681 gcaggccctg agggaagagg ccagcagctc gggctgctct gacacagact ctacagaact
     1741 agccagaatc ctctagggcc tgctgggtgg cccgaagcca ccatgcacag ggcctgggtc
     1801 accgggccag atgaggaatc tgggcctgct tgcctgctca ctgaacagct ggtctccaga
     1861 tgccaggaag ggagccaaag actcaagagt gagcgactca ggacgcctcc tgtgcccatc
     1921 gtgaggcggg ctgtttatac agccaccagc ctccctctgc cccccacagg ggccaagccc
     1981 aggggctgct actgtgaata taccacgagg actgatcggg cctagcccgg gacactaatg
     2041 tagaaacgtt ttatacagag actaattaat aacttaatga ccatgtacat agcagtctgt
     2101 gtttgtatat gtctgtgagc tattaatgtt attaattttc ataaaagctg ggaaacggag
     2161 ctgcctgttt
//
LOCUS       XM_032613609            2144 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major facilitator superfamily domain
            containing 2A (MFSD2A), transcript variant X2, mRNA.
ACCESSION   XM_032613609
VERSION     XM_032613609.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2144
                     /gene="MFSD2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116744195"
     CDS             144..1730
                     /gene="MFSD2A"
                     /codon_start=1
                     /product="sodium-dependent lysophosphatidylcholine
                     symporter 1 isoform X2"
                     /protein_id="XP_032469500.1"
                     /db_xref="GeneID:116744195"
                     /translation="MAKGEGAESGSAAGLLPTGILQAGERPVQVKESKKKNQLSICNK
                     LCYAVGGTPYQVTGCALGFFLQIYLLDVAQVDPFSASIILFVGRAWDAITDPLVGFCI
                     SKSPWTRLGRLMPWIIFSTPLAIIAYFLIWFVPDFQQGQTLWYLLFYCLFETLVTCFH
                     VPYSALTMFISTEQSERDSATAYRMTVEVLGTVLGTAIQGQIVGQAHTPCVQDANAST
                     VALEGVNRTQSATSLRETQNAYLLAAGVIASIYVICAVILTLGVREQREPYETQQAKP
                     MPFFRGLRLVMSHGPYIKLIAGFLFTSLAFMLVEGNFALFCTYTLGFRNEFQNLLLAI
                     MFSATVTIPIWQWFLTRFGKKMAVYIGISSAVPFLILVALMESNLIVTYVVAVAAGIS
                     VAAAFLLPWSMLPDVIDDFHLKQPHIHGTEPIFFSFYVFFTKFASGVSLGISTLSLDF
                     TGYQTRGCSQPARVKFTLKMLVTMAPIVLILVGLLLFKLYPIDEEKRRQNKKALQALR
                     EEASSSGCSDTDSTELARIL"
     misc_feature    273..1625
                     /gene="MFSD2A"
                     /note="Sodium-dependent lysophosphatidylcholine symporter
                     1 of the Major Facilitator Superfamily of transporters;
                     Region: MFS_NLS1_MFSD2A; cd17451"
                     /db_xref="CDD:341009"
     misc_feature    order(303..308,315..320,327..329,426..428,609..614,
                     618..626,633..635,696..698,705..710,717..719,1038..1040,
                     1047..1052,1059..1067,1074..1076,1158..1160,1170..1172,
                     1317..1322,1332..1334,1344..1346,1419..1421,1428..1433,
                     1440..1445,1452..1454)
                     /gene="MFSD2A"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341009"
ORIGIN      
        1 cgagtcagcg gcgttcgtag cggcggcggc ggctacaact accacgcgag cccgggcgga
       61 gcggaggccc gcggagcaga agaacatcgc ggagcagagg aacatcccgg cttcccggcc
      121 cggggcggcg tggcccgcgg ctcatggcca aaggagaggg cgccgagagc ggctccgccg
      181 cggggctgct gcccacgggc atcctccaag ccggtgaacg cccggtccag gtgaaggagt
      241 cgaagaagaa aaaccagttg tccatttgca acaaactttg ctatgcagtt ggggggaccc
      301 cctaccaggt gacaggttgt gccctggggt tcttcctgca gatctacctg ttggatgtag
      361 ctcaggtgga tcctttctct gcttccatca tcctgtttgt gggccgagct tgggatgcca
      421 tcacagaccc cctggtgggc ttctgcatta gcaaatcccc ctggacccgt ctaggccgcc
      481 ttatgccctg gatcatcttc tccacgcccc tggccatcat cgcctacttc ctcatctggt
      541 tcgtgcctga cttccaacag ggccagaccc tgtggtactt gcttttctac tgcctctttg
      601 agacgctggt cacgtgtttc cacgttccct actcagctct caccatgttt atcagcacgg
      661 aacagagtga gcgggattct gccactgcgt atcggatgac cgtggaggta ttaggtacag
      721 tgctgggcac agcaatccag gggcagattg tgggccaagc acatacacct tgtgtccagg
      781 acgccaatgc ctctacagta gccttggaag gtgtcaatcg cacgcagagc gccacctcac
      841 tcagagaaac gcaaaacgca tacctactgg cggcaggggt cattgcctcc atctatgtca
      901 tctgtgctgt catcctgacc ctgggcgtgc gggagcagag agaaccctac gagactcagc
      961 aggccaagcc gatgcccttc tttcggggcc tccggctggt catgagccat ggcccgtaca
     1021 tcaagcttat tgccggcttc ctcttcacct ccttggcttt catgctggtg gaggggaact
     1081 tcgctctgtt ttgcacctac accttgggtt ttcgtaacga attccagaat ctgctcctgg
     1141 ccatcatgtt ctcggccaca gtcaccatcc ccatctggca gtggttccta acccggtttg
     1201 gcaagaagat ggctgtgtac attgggatct catcagcagt gccatttctc atcttggtgg
     1261 ccctcatgga gagtaacctg attgtcacat atgtggtagc tgtggcagct ggcatcagtg
     1321 tagcagctgc cttcttacta ccctggtcca tgctgcctga cgtcattgat gacttccact
     1381 tgaagcagcc ccatatccat gggaccgagc ccatcttctt ctccttctat gtcttcttca
     1441 ccaagtttgc ctccggagtc tccctgggca tctccaccct cagtctggac tttactgggt
     1501 accagacccg tggctgctcc cagccagcac gtgtcaagtt cacactgaag atgctggtga
     1561 ccatggctcc catagtcctc atcctcgtag gcctgctgct ctttaagctg taccccattg
     1621 acgaggagaa gcggcggcag aacaagaagg ccctgcaggc cctgagggaa gaggccagca
     1681 gctcgggctg ctctgacaca gactctacag aactagccag aatcctctag ggcctgctgg
     1741 gtggcccgaa gccaccatgc acagggcctg ggtcaccggg ccagatgagg aatctgggcc
     1801 tgcttgcctg ctcactgaac agctggtctc cagatgccag gaagggagcc aaagactcaa
     1861 gagtgagcga ctcaggacgc ctcctgtgcc catcgtgagg cgggctgttt atacagccac
     1921 cagcctccct ctgcccccca caggggccaa gcccaggggc tgctactgtg aatataccac
     1981 gaggactgat cgggcctagc ccgggacact aatgtagaaa cgttttatac agagactaat
     2041 taataactta atgaccatgt acatagcagt ctgtgtttgt atatgtctgt gagctattaa
     2101 tgttattaat tttcataaaa gctgggaaac ggagctgcct gttt
//
LOCUS       XM_032613620            2164 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major facilitator superfamily domain
            containing 2A (MFSD2A), transcript variant X3, mRNA.
ACCESSION   XM_032613620
VERSION     XM_032613620.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2164
                     /gene="MFSD2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744195"
     CDS             167..1750
                     /gene="MFSD2A"
                     /codon_start=1
                     /product="sodium-dependent lysophosphatidylcholine
                     symporter 1 isoform X3"
                     /protein_id="XP_032469511.1"
                     /db_xref="GeneID:116744195"
                     /translation="MAKGEGAESGSAAGLLPTGILQAGERPVQKESKKKNQLSICNKL
                     CYAVGGTPYQVTGCALGFFLQIYLLDVAQVDPFSASIILFVGRAWDAITDPLVGFCIS
                     KSPWTRLGRLMPWIIFSTPLAIIAYFLIWFVPDFQQGQTLWYLLFYCLFETLVTCFHV
                     PYSALTMFISTEQSERDSATAYRMTVEVLGTVLGTAIQGQIVGQAHTPCVQDANASTV
                     ALEGVNRTQSATSLRETQNAYLLAAGVIASIYVICAVILTLGVREQREPYETQQAKPM
                     PFFRGLRLVMSHGPYIKLIAGFLFTSLAFMLVEGNFALFCTYTLGFRNEFQNLLLAIM
                     FSATVTIPIWQWFLTRFGKKMAVYIGISSAVPFLILVALMESNLIVTYVVAVAAGISV
                     AAAFLLPWSMLPDVIDDFHLKQPHIHGTEPIFFSFYVFFTKFASGVSLGISTLSLDFT
                     GYQTRGCSQPARVKFTLKMLVTMAPIVLILVGLLLFKLYPIDEEKRRQNKKALQALRE
                     EASSSGCSDTDSTELARIL"
     misc_feature    293..1645
                     /gene="MFSD2A"
                     /note="Sodium-dependent lysophosphatidylcholine symporter
                     1 of the Major Facilitator Superfamily of transporters;
                     Region: MFS_NLS1_MFSD2A; cd17451"
                     /db_xref="CDD:341009"
     misc_feature    order(323..328,335..340,347..349,446..448,629..634,
                     638..646,653..655,716..718,725..730,737..739,1058..1060,
                     1067..1072,1079..1087,1094..1096,1178..1180,1190..1192,
                     1337..1342,1352..1354,1364..1366,1439..1441,1448..1453,
                     1460..1465,1472..1474)
                     /gene="MFSD2A"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341009"
ORIGIN      
        1 aggcgcgtgg ggagtgcagt gagcgagtca gcggcgttcg tagcggcggc ggcggctaca
       61 actaccacgc gagcccgggc ggagcggagg cccgcggagc agaagaacat cgcggagcag
      121 aggaacatcc cggcttcccg gcccggggcg gcgtggcccg cggctcatgg ccaaaggaga
      181 gggcgccgag agcggctccg ccgcggggct gctgcccacg ggcatcctcc aagccggtga
      241 acgcccggtc cagaaggagt cgaagaagaa aaaccagttg tccatttgca acaaactttg
      301 ctatgcagtt ggggggaccc cctaccaggt gacaggttgt gccctggggt tcttcctgca
      361 gatctacctg ttggatgtag ctcaggtgga tcctttctct gcttccatca tcctgtttgt
      421 gggccgagct tgggatgcca tcacagaccc cctggtgggc ttctgcatta gcaaatcccc
      481 ctggacccgt ctaggccgcc ttatgccctg gatcatcttc tccacgcccc tggccatcat
      541 cgcctacttc ctcatctggt tcgtgcctga cttccaacag ggccagaccc tgtggtactt
      601 gcttttctac tgcctctttg agacgctggt cacgtgtttc cacgttccct actcagctct
      661 caccatgttt atcagcacgg aacagagtga gcgggattct gccactgcgt atcggatgac
      721 cgtggaggta ttaggtacag tgctgggcac agcaatccag gggcagattg tgggccaagc
      781 acatacacct tgtgtccagg acgccaatgc ctctacagta gccttggaag gtgtcaatcg
      841 cacgcagagc gccacctcac tcagagaaac gcaaaacgca tacctactgg cggcaggggt
      901 cattgcctcc atctatgtca tctgtgctgt catcctgacc ctgggcgtgc gggagcagag
      961 agaaccctac gagactcagc aggccaagcc gatgcccttc tttcggggcc tccggctggt
     1021 catgagccat ggcccgtaca tcaagcttat tgccggcttc ctcttcacct ccttggcttt
     1081 catgctggtg gaggggaact tcgctctgtt ttgcacctac accttgggtt ttcgtaacga
     1141 attccagaat ctgctcctgg ccatcatgtt ctcggccaca gtcaccatcc ccatctggca
     1201 gtggttccta acccggtttg gcaagaagat ggctgtgtac attgggatct catcagcagt
     1261 gccatttctc atcttggtgg ccctcatgga gagtaacctg attgtcacat atgtggtagc
     1321 tgtggcagct ggcatcagtg tagcagctgc cttcttacta ccctggtcca tgctgcctga
     1381 cgtcattgat gacttccact tgaagcagcc ccatatccat gggaccgagc ccatcttctt
     1441 ctccttctat gtcttcttca ccaagtttgc ctccggagtc tccctgggca tctccaccct
     1501 cagtctggac tttactgggt accagacccg tggctgctcc cagccagcac gtgtcaagtt
     1561 cacactgaag atgctggtga ccatggctcc catagtcctc atcctcgtag gcctgctgct
     1621 ctttaagctg taccccattg acgaggagaa gcggcggcag aacaagaagg ccctgcaggc
     1681 cctgagggaa gaggccagca gctcgggctg ctctgacaca gactctacag aactagccag
     1741 aatcctctag ggcctgctgg gtggcccgaa gccaccatgc acagggcctg ggtcaccggg
     1801 ccagatgagg aatctgggcc tgcttgcctg ctcactgaac agctggtctc cagatgccag
     1861 gaagggagcc aaagactcaa gagtgagcga ctcaggacgc ctcctgtgcc catcgtgagg
     1921 cgggctgttt atacagccac cagcctccct ctgcccccca caggggccaa gcccaggggc
     1981 tgctactgtg aatataccac gaggactgat cgggcctagc ccgggacact aatgtagaaa
     2041 cgttttatac agagactaat taataactta atgaccatgt acatagcagt ctgtgtttgt
     2101 atatgtctgt gagctattaa tgttattaat tttcataaaa gctgggaaac ggagctgcct
     2161 gttt
//
LOCUS       XM_032613628            2124 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major facilitator superfamily domain
            containing 2A (MFSD2A), transcript variant X4, mRNA.
ACCESSION   XM_032613628
VERSION     XM_032613628.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2124
                     /gene="MFSD2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744195"
     CDS             130..1710
                     /gene="MFSD2A"
                     /codon_start=1
                     /product="sodium-dependent lysophosphatidylcholine
                     symporter 1 isoform X4"
                     /protein_id="XP_032469519.1"
                     /db_xref="GeneID:116744195"
                     /translation="MAKGEGAESGSAAGLLPTGILQAGERPVQESKKKNQLSICNKLC
                     YAVGGTPYQVTGCALGFFLQIYLLDVAQVDPFSASIILFVGRAWDAITDPLVGFCISK
                     SPWTRLGRLMPWIIFSTPLAIIAYFLIWFVPDFQQGQTLWYLLFYCLFETLVTCFHVP
                     YSALTMFISTEQSERDSATAYRMTVEVLGTVLGTAIQGQIVGQAHTPCVQDANASTVA
                     LEGVNRTQSATSLRETQNAYLLAAGVIASIYVICAVILTLGVREQREPYETQQAKPMP
                     FFRGLRLVMSHGPYIKLIAGFLFTSLAFMLVEGNFALFCTYTLGFRNEFQNLLLAIMF
                     SATVTIPIWQWFLTRFGKKMAVYIGISSAVPFLILVALMESNLIVTYVVAVAAGISVA
                     AAFLLPWSMLPDVIDDFHLKQPHIHGTEPIFFSFYVFFTKFASGVSLGISTLSLDFTG
                     YQTRGCSQPARVKFTLKMLVTMAPIVLILVGLLLFKLYPIDEEKRRQNKKALQALREE
                     ASSSGCSDTDSTELARIL"
     misc_feature    253..1605
                     /gene="MFSD2A"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:475125"
     misc_feature    order(283..288,295..300,307..309,406..408,589..594,
                     598..606,613..615,676..678,685..690,697..699,1018..1020,
                     1027..1032,1039..1047,1054..1056,1138..1140,1150..1152,
                     1297..1302,1312..1314,1324..1326,1399..1401,1408..1413,
                     1420..1425,1432..1434)
                     /gene="MFSD2A"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341009"
ORIGIN      
        1 tcgtagcggc ggcggcggct acaactacca cgcgagcccg ggcggagcgg aggcccgcgg
       61 agcagaagaa catcgcggag cagaggaaca tcccggcttc ccggcccggg gcggcgtggc
      121 ccgcggctca tggccaaagg agagggcgcc gagagcggct ccgccgcggg gctgctgccc
      181 acgggcatcc tccaagccgg tgaacgcccg gtccaggagt cgaagaagaa aaaccagttg
      241 tccatttgca acaaactttg ctatgcagtt ggggggaccc cctaccaggt gacaggttgt
      301 gccctggggt tcttcctgca gatctacctg ttggatgtag ctcaggtgga tcctttctct
      361 gcttccatca tcctgtttgt gggccgagct tgggatgcca tcacagaccc cctggtgggc
      421 ttctgcatta gcaaatcccc ctggacccgt ctaggccgcc ttatgccctg gatcatcttc
      481 tccacgcccc tggccatcat cgcctacttc ctcatctggt tcgtgcctga cttccaacag
      541 ggccagaccc tgtggtactt gcttttctac tgcctctttg agacgctggt cacgtgtttc
      601 cacgttccct actcagctct caccatgttt atcagcacgg aacagagtga gcgggattct
      661 gccactgcgt atcggatgac cgtggaggta ttaggtacag tgctgggcac agcaatccag
      721 gggcagattg tgggccaagc acatacacct tgtgtccagg acgccaatgc ctctacagta
      781 gccttggaag gtgtcaatcg cacgcagagc gccacctcac tcagagaaac gcaaaacgca
      841 tacctactgg cggcaggggt cattgcctcc atctatgtca tctgtgctgt catcctgacc
      901 ctgggcgtgc gggagcagag agaaccctac gagactcagc aggccaagcc gatgcccttc
      961 tttcggggcc tccggctggt catgagccat ggcccgtaca tcaagcttat tgccggcttc
     1021 ctcttcacct ccttggcttt catgctggtg gaggggaact tcgctctgtt ttgcacctac
     1081 accttgggtt ttcgtaacga attccagaat ctgctcctgg ccatcatgtt ctcggccaca
     1141 gtcaccatcc ccatctggca gtggttccta acccggtttg gcaagaagat ggctgtgtac
     1201 attgggatct catcagcagt gccatttctc atcttggtgg ccctcatgga gagtaacctg
     1261 attgtcacat atgtggtagc tgtggcagct ggcatcagtg tagcagctgc cttcttacta
     1321 ccctggtcca tgctgcctga cgtcattgat gacttccact tgaagcagcc ccatatccat
     1381 gggaccgagc ccatcttctt ctccttctat gtcttcttca ccaagtttgc ctccggagtc
     1441 tccctgggca tctccaccct cagtctggac tttactgggt accagacccg tggctgctcc
     1501 cagccagcac gtgtcaagtt cacactgaag atgctggtga ccatggctcc catagtcctc
     1561 atcctcgtag gcctgctgct ctttaagctg taccccattg acgaggagaa gcggcggcag
     1621 aacaagaagg ccctgcaggc cctgagggaa gaggccagca gctcgggctg ctctgacaca
     1681 gactctacag aactagccag aatcctctag ggcctgctgg gtggcccgaa gccaccatgc
     1741 acagggcctg ggtcaccggg ccagatgagg aatctgggcc tgcttgcctg ctcactgaac
     1801 agctggtctc cagatgccag gaagggagcc aaagactcaa gagtgagcga ctcaggacgc
     1861 ctcctgtgcc catcgtgagg cgggctgttt atacagccac cagcctccct ctgcccccca
     1921 caggggccaa gcccaggggc tgctactgtg aatataccac gaggactgat cgggcctagc
     1981 ccgggacact aatgtagaaa cgttttatac agagactaat taataactta atgaccatgt
     2041 acatagcagt ctgtgtttgt atatgtctgt gagctattaa tgttattaat tttcataaaa
     2101 gctgggaaac ggagctgcct gttt
//
LOCUS       XM_032613637            2532 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major facilitator superfamily domain
            containing 2A (MFSD2A), transcript variant X5, mRNA.
ACCESSION   XM_032613637
VERSION     XM_032613637.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2532
                     /gene="MFSD2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744195"
     CDS             143..1672
                     /gene="MFSD2A"
                     /codon_start=1
                     /product="sodium-dependent lysophosphatidylcholine
                     symporter 1 isoform X5"
                     /protein_id="XP_032469528.1"
                     /db_xref="GeneID:116744195"
                     /translation="MAKGEGAESGSAAGLLPTGILQAGERPVQVKKESKKKNQLSICN
                     KLCYAVGGTPYQVTGCALGFFLQIYLLDVAQVDPFSASIILFVGRAWDAITDPLVGFC
                     ISKSPWTRLGRLMPWIIFSTPLAIIAYFLIWFVPDFQQGQTLWYLLFYCLFETLVTCF
                     HVPYSALTMFISTEQSERDSATAYRMTVEVLGTVLGTAIQGQIVGQAHTPCVQDANAS
                     TVALEGVNRTQSATSLRETQNAYLLAAGVIASIYVICAVILTLGVREQREPYETQQAK
                     PMPFFRGLRLVMSHGPYIKLIAGFLFTSLAFMLVEGNFALFCTYTLGFRNEFQNLLLA
                     IMFSATVTIPIWQWFLTRFGKKMAVYIGISSAVPFLILVALMESNLIVTYVVAVAAGI
                     SVAAAFLLPWSMLPDVIDDFHLKQPHIHGTEPIFFSFYVFFTKFASGVSLGISTLSLD
                     FTGYQTRGCSQPARVKFTLKMLVTMAPIVLILVGLLLFKLYPIDEEKRRQNKKALQAL
                     R"
     misc_feature    275..1627
                     /gene="MFSD2A"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:475125"
     misc_feature    order(305..310,317..322,329..331,428..430,611..616,
                     620..628,635..637,698..700,707..712,719..721,1040..1042,
                     1049..1054,1061..1069,1076..1078,1160..1162,1172..1174,
                     1319..1324,1334..1336,1346..1348,1421..1423,1430..1435,
                     1442..1447,1454..1456)
                     /gene="MFSD2A"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341009"
ORIGIN      
        1 gagtcagcgg cgttcgtagc ggcggcggcg gctacaacta ccacgcgagc ccgggcggag
       61 cggaggcccg cggagcagaa gaacatcgcg gagcagagga acatcccggc ttcccggccc
      121 ggggcggcgt ggcccgcggc tcatggccaa aggagagggc gccgagagcg gctccgccgc
      181 ggggctgctg cccacgggca tcctccaagc cggtgaacgc ccggtccagg tgaagaagga
      241 gtcgaagaag aaaaaccagt tgtccatttg caacaaactt tgctatgcag ttggggggac
      301 cccctaccag gtgacaggtt gtgccctggg gttcttcctg cagatctacc tgttggatgt
      361 agctcaggtg gatcctttct ctgcttccat catcctgttt gtgggccgag cttgggatgc
      421 catcacagac cccctggtgg gcttctgcat tagcaaatcc ccctggaccc gtctaggccg
      481 ccttatgccc tggatcatct tctccacgcc cctggccatc atcgcctact tcctcatctg
      541 gttcgtgcct gacttccaac agggccagac cctgtggtac ttgcttttct actgcctctt
      601 tgagacgctg gtcacgtgtt tccacgttcc ctactcagct ctcaccatgt ttatcagcac
      661 ggaacagagt gagcgggatt ctgccactgc gtatcggatg accgtggagg tattaggtac
      721 agtgctgggc acagcaatcc aggggcagat tgtgggccaa gcacatacac cttgtgtcca
      781 ggacgccaat gcctctacag tagccttgga aggtgtcaat cgcacgcaga gcgccacctc
      841 actcagagaa acgcaaaacg catacctact ggcggcaggg gtcattgcct ccatctatgt
      901 catctgtgct gtcatcctga ccctgggcgt gcgggagcag agagaaccct acgagactca
      961 gcaggccaag ccgatgccct tctttcgggg cctccggctg gtcatgagcc atggcccgta
     1021 catcaagctt attgccggct tcctcttcac ctccttggct ttcatgctgg tggaggggaa
     1081 cttcgctctg ttttgcacct acaccttggg ttttcgtaac gaattccaga atctgctcct
     1141 ggccatcatg ttctcggcca cagtcaccat ccccatctgg cagtggttcc taacccggtt
     1201 tggcaagaag atggctgtgt acattgggat ctcatcagca gtgccatttc tcatcttggt
     1261 ggccctcatg gagagtaacc tgattgtcac atatgtggta gctgtggcag ctggcatcag
     1321 tgtagcagct gccttcttac taccctggtc catgctgcct gacgtcattg atgacttcca
     1381 cttgaagcag ccccatatcc atgggaccga gcccatcttc ttctccttct atgtcttctt
     1441 caccaagttt gcctccggag tctccctggg catctccacc ctcagtctgg actttactgg
     1501 gtaccagacc cgtggctgct cccagccagc acgtgtcaag ttcacactga agatgctggt
     1561 gaccatggct cccatagtcc tcatcctcgt aggcctgctg ctctttaagc tgtaccccat
     1621 tgacgaggag aagcggcggc agaacaagaa ggccctgcag gccctgagat gaagacactg
     1681 aggcttaacc aggaagagtg acaagtgata aggggcagag ctggggtttg agccctggtg
     1741 ttctgactcc agagcccaca ctcttcacgg ctctcctggt gtgcaggacc tcaggtgcgg
     1801 agaccagagg gcagggtgga gtgagttgtg ccagctcagc tcgcccaggc cagggcgtgg
     1861 tactggggct tggggtgcct tgtgggctgc aagaacagcg aacaaaccta ccagcagttt
     1921 ctgggctgag agtgggagtg agcaaactac gtcctgtgat ttagaccagc ctggcagtga
     1981 gctaagacct cagagccaag atcctgcggg gaacaagcag gtgggtaagg gtgcttcctc
     2041 cagcccatct cctctggctt ttgcagggaa gaggccagca gctcgggctg ctctgacaca
     2101 gactctacag aactagccag aatcctctag ggcctgctgg gtggcccgaa gccaccatgc
     2161 acagggcctg ggtcaccggg ccagatgagg aatctgggcc tgcttgcctg ctcactgaac
     2221 agctggtctc cagatgccag gaagggagcc aaagactcaa gagtgagcga ctcaggacgc
     2281 ctcctgtgcc catcgtgagg cgggctgttt atacagccac cagcctccct ctgcccccca
     2341 caggggccaa gcccaggggc tgctactgtg aatataccac gaggactgat cgggcctagc
     2401 ccgggacact aatgtagaaa cgttttatac agagactaat taataactta atgaccatgt
     2461 acatagcagt ctgtgtttgt atatgtctgt gagctattaa tgttattaat tttcataaaa
     2521 gctgggaaac gg
//
LOCUS       XR_004346983            2248 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major facilitator superfamily domain
            containing 2A (MFSD2A), transcript variant X6, misc_RNA.
ACCESSION   XR_004346983
VERSION     XR_004346983.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2248
                     /gene="MFSD2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744195"
     misc_RNA        1..2248
                     /gene="MFSD2A"
                     /product="major facilitator superfamily domain containing
                     2A, transcript variant X6"
                     /db_xref="GeneID:116744195"
ORIGIN      
        1 tcgtagcggc ggcggcggct acaactacca cgcgagcccg ggcggagcgg aggcccgcgg
       61 agcagaagaa catcgcggag cagaggaaca tcccggcttc ccggcccggg gcggcgtggc
      121 ccgcggctca tggccaaagg agagggcgcc gagagcggct ccgccgcggg gctgctgccc
      181 acgggcatcc tccaagccgg tgaacgcccg gtccaggtga agaaggagtc gaagaagaaa
      241 aaccagttgt ccatttgcaa caaactttgc tatgcagttg gggggacccc ctaccaggtg
      301 acaggttgtg ccctggggtt cttcctgcag atctacctgt tggatgtagc tcaggtggat
      361 cctttctctg cttccatcat cctgtttgtg ggccgagctt gggatgccat cacagacccc
      421 ctggtgggct tctgcattag caaatccccc tggacccgtc taggccgcct tatgccctgg
      481 atcatcttct ccacgcccct ggccatcatc gcctacttcc tcatctggtt cgtgcctgac
      541 ttccaacagg gccagaccct gtggtacttg cttttctact gcctctttga gacgctggtc
      601 acgtgtttcc acgttcccta ctcagctctc accatgttta tcagcacgga acagagtgag
      661 cgggattctg ccactgcgta tcggatgacc gtggaggtat taggtacagt gctgggcaca
      721 gcaatccagg ggcagattgt gggccaagca catacacctt gtgtccagga cgccaatgcc
      781 tctacagtag ccttggaagg tgtcaatcgc acgcagagcg ccacctcact cagagaaacg
      841 caaaacgcat acctactggc ggcaggggtc attgcctcca tctatgtcat ctgtgctgtc
      901 atcctgaccc tgggcgtgcg ggagcagaga gaaccctacg agactcagca ggccaagccg
      961 atgcccttct ttcggggcct ccggctggtc atgagccatg gcccgtacat caagcttatt
     1021 gccggcttcc tcttcacctc cttggctttc atgctggtgg aggggaactt cgctctgttt
     1081 tgcacctaca ccttgggttt tcgtaacgaa ttccagaatc tgctcctggc catcatgttc
     1141 tcggccacag tcaccatccc catctggcag tggttcctaa cccggtttgg caagaagatg
     1201 gctgtgtaca ttgggatctc atcagcagtg ccatttctca tcttggtggc cctcatggag
     1261 agtaacctga ttgtcacata tgtggtagct gtggcagctg gcatcagtgt agcagctgcc
     1321 ttcttactac cctggtccat gctgcctgac gtcattgatg acttccactt gaagcagccc
     1381 catatccatg ggaccgagcc catcttcttc tccttctatg tcttcttcac caagtttgcc
     1441 tccggagtct ccctgggcat ctccaccctc agtctggact ttactgggta ccagacccgt
     1501 ggctgctccc agccagcacg tgtcaagttc acactgaaga tgctggtgac catggctccc
     1561 atagtcctca tcctcgtagg cctgctgctc tttaagctgt accccattga cgaggagaag
     1621 cggcggcaga acaagaaggc cctgcaggcc ctgagatgaa gacactgagg cttaaccagg
     1681 aagagtgaca agtgataagg ggcagagctg gggtttgagc cctggtgttc tgactccaga
     1741 gcccacactc ttcacggctc tcctggtgtg caggacctca gggaagaggc cagcagctcg
     1801 ggctgctctg acacagactc tacagaacta gccagaatcc tctagggcct gctgggtggc
     1861 ccgaagccac catgcacagg gcctgggtca ccgggccaga tgaggaatct gggcctgctt
     1921 gcctgctcac tgaacagctg gtctccagat gccaggaagg gagccaaaga ctcaagagtg
     1981 agcgactcag gacgcctcct gtgcccatcg tgaggcgggc tgtttataca gccaccagcc
     2041 tccctctgcc ccccacaggg gccaagccca ggggctgcta ctgtgaatat accacgagga
     2101 ctgatcgggc ctagcccggg acactaatgt agaaacgttt tatacagaga ctaattaata
     2161 acttaatgac catgtacata gcagtctgtg tttgtatatg tctgtgagct attaatgtta
     2221 ttaattttca taaaagctgg gaaacgga
//
LOCUS       XM_032613651            1798 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major facilitator superfamily domain
            containing 2A (MFSD2A), transcript variant X7, mRNA.
ACCESSION   XM_032613651
VERSION     XM_032613651.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1798
                     /gene="MFSD2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744195"
     CDS             29..1384
                     /gene="MFSD2A"
                     /codon_start=1
                     /product="sodium-dependent lysophosphatidylcholine
                     symporter 1 isoform X6"
                     /protein_id="XP_032469542.1"
                     /db_xref="GeneID:116744195"
                     /translation="MVWDSHVGRHWAQSSPLAAPEATPSPGVGLPRSCVCTHGIIFST
                     PLAIIAYFLIWFVPDFQQGQTLWYLLFYCLFETLVTCFHVPYSALTMFISTEQSERDS
                     ATAYRMTVEVLGTVLGTAIQGQIVGQAHTPCVQDANASTVALEGVNRTQSATSLRETQ
                     NAYLLAAGVIASIYVICAVILTLGVREQREPYETQQAKPMPFFRGLRLVMSHGPYIKL
                     IAGFLFTSLAFMLVEGNFALFCTYTLGFRNEFQNLLLAIMFSATVTIPIWQWFLTRFG
                     KKMAVYIGISSAVPFLILVALMESNLIVTYVVAVAAGISVAAAFLLPWSMLPDVIDDF
                     HLKQPHIHGTEPIFFSFYVFFTKFASGVSLGISTLSLDFTGYQTRGCSQPARVKFTLK
                     MLVTMAPIVLILVGLLLFKLYPIDEEKRRQNKKALQALREEASSSGCSDTDSTELARI
                     L"
     misc_feature    146..1279
                     /gene="MFSD2A"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:475125"
     misc_feature    order(263..268,272..280,287..289,350..352,359..364,
                     371..373,692..694,701..706,713..721,728..730,812..814,
                     824..826,971..976,986..988,998..1000,1073..1075,
                     1082..1087,1094..1099,1106..1108)
                     /gene="MFSD2A"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341009"
ORIGIN      
        1 agttggacca tcctgagatc taactaggat ggtgtgggac tcacatgtgg ggaggcactg
       61 ggcccagtcc tcccctctgg ctgctccaga agcaacacct tcacctggag ttggcctccc
      121 ccgctcctgt gtatgcacac atgggatcat cttctccacg cccctggcca tcatcgccta
      181 cttcctcatc tggttcgtgc ctgacttcca acagggccag accctgtggt acttgctttt
      241 ctactgcctc tttgagacgc tggtcacgtg tttccacgtt ccctactcag ctctcaccat
      301 gtttatcagc acggaacaga gtgagcggga ttctgccact gcgtatcgga tgaccgtgga
      361 ggtattaggt acagtgctgg gcacagcaat ccaggggcag attgtgggcc aagcacatac
      421 accttgtgtc caggacgcca atgcctctac agtagccttg gaaggtgtca atcgcacgca
      481 gagcgccacc tcactcagag aaacgcaaaa cgcataccta ctggcggcag gggtcattgc
      541 ctccatctat gtcatctgtg ctgtcatcct gaccctgggc gtgcgggagc agagagaacc
      601 ctacgagact cagcaggcca agccgatgcc cttctttcgg ggcctccggc tggtcatgag
      661 ccatggcccg tacatcaagc ttattgccgg cttcctcttc acctccttgg ctttcatgct
      721 ggtggagggg aacttcgctc tgttttgcac ctacaccttg ggttttcgta acgaattcca
      781 gaatctgctc ctggccatca tgttctcggc cacagtcacc atccccatct ggcagtggtt
      841 cctaacccgg tttggcaaga agatggctgt gtacattggg atctcatcag cagtgccatt
      901 tctcatcttg gtggccctca tggagagtaa cctgattgtc acatatgtgg tagctgtggc
      961 agctggcatc agtgtagcag ctgccttctt actaccctgg tccatgctgc ctgacgtcat
     1021 tgatgacttc cacttgaagc agccccatat ccatgggacc gagcccatct tcttctcctt
     1081 ctatgtcttc ttcaccaagt ttgcctccgg agtctccctg ggcatctcca ccctcagtct
     1141 ggactttact gggtaccaga cccgtggctg ctcccagcca gcacgtgtca agttcacact
     1201 gaagatgctg gtgaccatgg ctcccatagt cctcatcctc gtaggcctgc tgctctttaa
     1261 gctgtacccc attgacgagg agaagcggcg gcagaacaag aaggccctgc aggccctgag
     1321 ggaagaggcc agcagctcgg gctgctctga cacagactct acagaactag ccagaatcct
     1381 ctagggcctg ctgggtggcc cgaagccacc atgcacaggg cctgggtcac cgggccagat
     1441 gaggaatctg ggcctgcttg cctgctcact gaacagctgg tctccagatg ccaggaaggg
     1501 agccaaagac tcaagagtga gcgactcagg acgcctcctg tgcccatcgt gaggcgggct
     1561 gtttatacag ccaccagcct ccctctgccc cccacagggg ccaagcccag gggctgctac
     1621 tgtgaatata ccacgaggac tgatcgggcc tagcccggga cactaatgta gaaacgtttt
     1681 atacagagac taattaataa cttaatgacc atgtacatag cagtctgtgt ttgtatatgt
     1741 ctgtgagcta ttaatgttat taattttcat aaaagctggg aaacggagct gcctgttt
//
LOCUS       XM_032613661            1678 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus major facilitator superfamily domain
            containing 2A (MFSD2A), transcript variant X8, mRNA.
ACCESSION   XM_032613661
VERSION     XM_032613661.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1678
                     /gene="MFSD2A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744195"
     CDS             14..1264
                     /gene="MFSD2A"
                     /codon_start=1
                     /product="sodium-dependent lysophosphatidylcholine
                     symporter 1 isoform X7"
                     /protein_id="XP_032469552.1"
                     /db_xref="GeneID:116744195"
                     /translation="MDLRIIFSTPLAIIAYFLIWFVPDFQQGQTLWYLLFYCLFETLV
                     TCFHVPYSALTMFISTEQSERDSATAYRMTVEVLGTVLGTAIQGQIVGQAHTPCVQDA
                     NASTVALEGVNRTQSATSLRETQNAYLLAAGVIASIYVICAVILTLGVREQREPYETQ
                     QAKPMPFFRGLRLVMSHGPYIKLIAGFLFTSLAFMLVEGNFALFCTYTLGFRNEFQNL
                     LLAIMFSATVTIPIWQWFLTRFGKKMAVYIGISSAVPFLILVALMESNLIVTYVVAVA
                     AGISVAAAFLLPWSMLPDVIDDFHLKQPHIHGTEPIFFSFYVFFTKFASGVSLGISTL
                     SLDFTGYQTRGCSQPARVKFTLKMLVTMAPIVLILVGLLLFKLYPIDEEKRRQNKKAL
                     QALREEASSSGCSDTDSTELARIL"
     misc_feature    26..1159
                     /gene="MFSD2A"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:475125"
     misc_feature    order(143..148,152..160,167..169,230..232,239..244,
                     251..253,572..574,581..586,593..601,608..610,692..694,
                     704..706,851..856,866..868,878..880,953..955,962..967,
                     974..979,986..988)
                     /gene="MFSD2A"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:341009"
ORIGIN      
        1 agatgcagca gggatggatc tgaggatcat cttctccacg cccctggcca tcatcgccta
       61 cttcctcatc tggttcgtgc ctgacttcca acagggccag accctgtggt acttgctttt
      121 ctactgcctc tttgagacgc tggtcacgtg tttccacgtt ccctactcag ctctcaccat
      181 gtttatcagc acggaacaga gtgagcggga ttctgccact gcgtatcgga tgaccgtgga
      241 ggtattaggt acagtgctgg gcacagcaat ccaggggcag attgtgggcc aagcacatac
      301 accttgtgtc caggacgcca atgcctctac agtagccttg gaaggtgtca atcgcacgca
      361 gagcgccacc tcactcagag aaacgcaaaa cgcataccta ctggcggcag gggtcattgc
      421 ctccatctat gtcatctgtg ctgtcatcct gaccctgggc gtgcgggagc agagagaacc
      481 ctacgagact cagcaggcca agccgatgcc cttctttcgg ggcctccggc tggtcatgag
      541 ccatggcccg tacatcaagc ttattgccgg cttcctcttc acctccttgg ctttcatgct
      601 ggtggagggg aacttcgctc tgttttgcac ctacaccttg ggttttcgta acgaattcca
      661 gaatctgctc ctggccatca tgttctcggc cacagtcacc atccccatct ggcagtggtt
      721 cctaacccgg tttggcaaga agatggctgt gtacattggg atctcatcag cagtgccatt
      781 tctcatcttg gtggccctca tggagagtaa cctgattgtc acatatgtgg tagctgtggc
      841 agctggcatc agtgtagcag ctgccttctt actaccctgg tccatgctgc ctgacgtcat
      901 tgatgacttc cacttgaagc agccccatat ccatgggacc gagcccatct tcttctcctt
      961 ctatgtcttc ttcaccaagt ttgcctccgg agtctccctg ggcatctcca ccctcagtct
     1021 ggactttact gggtaccaga cccgtggctg ctcccagcca gcacgtgtca agttcacact
     1081 gaagatgctg gtgaccatgg ctcccatagt cctcatcctc gtaggcctgc tgctctttaa
     1141 gctgtacccc attgacgagg agaagcggcg gcagaacaag aaggccctgc aggccctgag
     1201 ggaagaggcc agcagctcgg gctgctctga cacagactct acagaactag ccagaatcct
     1261 ctagggcctg ctgggtggcc cgaagccacc atgcacaggg cctgggtcac cgggccagat
     1321 gaggaatctg ggcctgcttg cctgctcact gaacagctgg tctccagatg ccaggaaggg
     1381 agccaaagac tcaagagtga gcgactcagg acgcctcctg tgcccatcgt gaggcgggct
     1441 gtttatacag ccaccagcct ccctctgccc cccacagggg ccaagcccag gggctgctac
     1501 tgtgaatata ccacgaggac tgatcgggcc tagcccggga cactaatgta gaaacgtttt
     1561 atacagagac taattaataa cttaatgacc atgtacatag cagtctgtgt ttgtatatgt
     1621 ctgtgagcta ttaatgttat taattttcat aaaagctggg aaacggagct gcctgttt
//
LOCUS       XM_032613672            1257 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mediator complex subunit 18 (MED18),
            mRNA.
ACCESSION   XM_032613672
VERSION     XM_032613672.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1257
                     /gene="MED18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 8
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744222"
     CDS             267..893
                     /gene="MED18"
                     /codon_start=1
                     /product="mediator of RNA polymerase II transcription
                     subunit 18"
                     /protein_id="XP_032469563.1"
                     /db_xref="GeneID:116744222"
                     /translation="MEAPPVTMMPVTGGTINMMEYLLQGSVLDHSLESLIHRLRGLCD
                     NMEPETFLDHEMVFLLKGQQASPFVLRARRSMDRAGAPWHLRYLGQPEMGDKNRHALV
                     RNCVDIATSENLTDFLMEMGFRMDHEFVARGHLFRKGIMKIVVYKIFRILTPGNTDNT
                     EALSLSYLVELSVVAPAGQDVVSDDMRNFAEQLKPLVHLEKIDPKRLM"
     misc_feature    321..875
                     /gene="MED18"
                     /note="Med18 protein; Region: Med18; pfam09637"
                     /db_xref="CDD:462845"
ORIGIN      
        1 acgtcgcgga gtggtggtgt tagaggtttg agcggcgaaa ccttttttgc cggaagtggg
       61 aagaagagag ggaagtttcg ccctctccca gggtcttcaa gtttagggct gtgggctagt
      121 tgtcactaaa aagctcagag gtgctctggt ggatacaatt cctcgctttg cgagaagagg
      181 ctagaacgcg cgctgaggtg tatcctgtgt ttacttgacg ggggactccg agtccagttc
      241 tgtcgttttc aacttaaaca ggtaacatgg aggcacctcc agtcaccatg atgcctgtca
      301 ccgggggcac cattaacatg atggagtacc tgctgcaggg aagtgtttta gatcacagct
      361 tggaaagcct catccaccgc cttcgtggtt tgtgtgacaa catggaacct gagactttcc
      421 ttgaccatga gatggtattc ctccttaagg gccagcaggc cagtccgttt gttctaaggg
      481 ctcgacgctc tatggatagg gcaggggcac cctggcacct gcgctacctg ggacagccag
      541 aaatgggaga caagaaccgc catgccctgg tgcgtaactg cgtggacatt gcaacatctg
      601 agaaccttac tgacttcctg atggaaatgg gcttccgcat ggaccatgag tttgttgcca
      661 ggggacacct gttccgtaag ggcatcatga agatcgtggt gtacaagatc ttccgcatct
      721 tgacaccagg gaacacagac aatactgagg ccttgtcact ctcctacctt gtggaactaa
      781 gtgttgttgc accagctggg caggacgtgg tgtctgatga catgaggaac tttgcagagc
      841 agctgaaacc tctggttcac ctagagaaaa tagaccccaa aaggctcatg tgacaaggca
      901 gtctgtccac cactggggct tgtcctcagc tgttacaaaa aaagaagatg ttataattgc
      961 cctatttcac cactgctagc caggcattct tccctcagga aggaggacaa tgagaactta
     1021 gttggttctt tgcactgttt tcctcatgtg gccagttcac ttttgtgaca gcctttctaa
     1081 attaaaggct aaggatgaca tggagaatct agataatccc tctgcataaa gaggggaaac
     1141 tggaataaaa tagctttggg gaataaaaat cttttaattg ttttgccatt tgtgtgtaag
     1201 gtttgtaaaa cagagactga gtttgtattg tgcagtaata aaggctataa agagaaa
//
LOCUS       XM_032613685            3773 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prolyl-tRNA synthetase 2, mitochondrial
            (PARS2), transcript variant X1, mRNA.
ACCESSION   XM_032613685
VERSION     XM_032613685.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3773
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3773
                     /gene="PARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744225"
     CDS             133..1560
                     /gene="PARS2"
                     /codon_start=1
                     /product="probable proline--tRNA ligase, mitochondrial"
                     /protein_id="XP_032469576.1"
                     /db_xref="GeneID:116744225"
                     /translation="MEGLLTRCRALPALATCSHQLSGYVPHRFHHRAPGRGKRLVLSR
                     MFQPQNLREDQVLSLEGRTGELTCKSQRLMLQVGLIHPASSGCYHLLPYTVRAMEKLV
                     RVIDQEMQAIGGQKVNMPSLSPAELWRATSRWDSMGKELLKLRDRHGKEYCLGPTHEE
                     AITALIASQQTLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEA
                     AQQTYSLVCDAYSSLFDRLGLQCVKVQADVGSIGGTMSHEFQLPVDVGEDRLAVCSSC
                     GFSANMETLDLSPTNCPACQGPLTKTKGIEVGHTFYLGTKYSSIFSAQFTNVHGKPSL
                     AEMGCYGLGVTRILAAVIEALATEDCIRWPGLLAPYQVCLISPKKGSKEEAASELTGH
                     LYDHITEAVPQLQGEVLLDDRTHLTIGYRLKDANKFGYPFVIIAGKRALDDPAHFEVW
                     CQNTGEVVFLTREGVLELLSQVQVV"
     misc_feature    325..1191
                     /gene="PARS2"
                     /note="Prolyl-tRNA synthetase (ProRS) class II core
                     catalytic domain. ProRS is a homodimer. It is responsible
                     for the attachment of proline to the 3' OH group of ribose
                     of the appropriate tRNA. This domain is primarily
                     responsible for ATP-dependent formation of...; Region:
                     ProRS_core_prok; cd00779"
                     /db_xref="CDD:238402"
     misc_feature    order(373..378,397..408,427..429,478..486,490..495,
                     553..555,559..573,625..627,688..690,739..741)
                     /gene="PARS2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238402"
     misc_feature    472..495
                     /gene="PARS2"
                     /note="motif 1; other site"
                     /db_xref="CDD:238402"
     misc_feature    order(601..603,607..609,697..699,703..705,727..735,
                     742..744,748..750,754..756,1042..1044,1048..1053,
                     1057..1059,1147..1155,1159..1161,1168..1170)
                     /gene="PARS2"
                     /note="active site"
                     /db_xref="CDD:238402"
     misc_feature    694..705
                     /gene="PARS2"
                     /note="motif 2; other site"
                     /db_xref="CDD:238402"
     misc_feature    1153..1170
                     /gene="PARS2"
                     /note="motif 3; other site"
                     /db_xref="CDD:238402"
     misc_feature    1237..1539
                     /gene="PARS2"
                     /note="HGTP anticodon binding domain, as found at the
                     C-terminus of histidyl, glycyl, threonyl and prolyl tRNA
                     synthetases, which are classified as a group of class II
                     aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon
                     binding domain is responsible for...; Region:
                     HGTP_anticodon; cl00266"
                     /db_xref="CDD:469699"
     misc_feature    order(1261..1266,1399..1401,1417..1419,1441..1443,
                     1474..1476,1480..1482)
                     /gene="PARS2"
                     /note="anticodon binding site [active]"
                     /db_xref="CDD:238379"
ORIGIN      
        1 gcgggaagga caggaggcgg ggcttcgtgc aggaacgccc ctggcgcagg cgcggtggcc
       61 cggcgcggcg gtccctgcgg ggtcggcgtt cgctgggact acggcgcagg tgccccctta
      121 cgctgggctg tgatggaagg gctgctgaca agatgcagag cgctgcctgc cttggccacc
      181 tgcagtcacc agctctcggg gtacgttcct cacaggtttc accaccgtgc ccccgggaga
      241 gggaagcgct tggtgctgtc ccgcatgttc cagccccaga accttcggga agaccaggtg
      301 ctctctctag agggcagaac tggcgagctg acctgtaaga gccagcggct gatgctgcag
      361 gtgggcctga ttcacccagc aagctccggc tgttaccacc tcctgcctta tactgtccgt
      421 gccatggaga agcttgtgcg ggtgatagac caggagatgc aggccatcgg gggacagaag
      481 gtcaacatgc ccagcctcag cccagcagag ctctggcgag ccaccagccg gtgggactct
      541 atgggcaagg agctgctaaa acttagagac agacacggca aggagtactg cttaggacca
      601 actcacgagg aagccattac agccctgatt gcctcccagc agacactgtc ctacaagcag
      661 ctcccgctcc tgctctacca ggtgacgagg aagtttcggg atgagcccag gccccgcttt
      721 ggtcttctcc gaggccgaga gttctacatg aaggacatgt acaccttcga ctcctcccct
      781 gaggctgccc agcagaccta cagcctggtg tgtgatgcct acagcagcct gtttgacagg
      841 ctggggctgc agtgcgtcaa ggtccaggca gacgtgggca gcatcggggg cacgatgtct
      901 cacgagttcc agctgccggt ggacgtcgga gaggaccggc ttgcagtctg ttccagctgc
      961 ggcttttcgg ccaacatgga gactctggac ttgtcaccaa caaactgccc tgcttgccag
     1021 gggccactga ccaaaaccaa aggcatcgag gtcgggcaca cgttttacct gggcaccaag
     1081 tactcctcca ttttcagtgc ccagttcacc aatgtccacg gcaagccatc cctggctgaa
     1141 atggggtgct atggcttggg tgtgacacgg atcttggccg ctgtcattga agctctcgct
     1201 acagaagact gcatccgctg gcccggcctc ctggcccctt accaagtctg cctcatttcc
     1261 cccaagaagg gcagtaagga ggaggcggcc tcagagctca cggggcacct gtatgaccac
     1321 atcacagagg cagtgccgca gctccaaggg gaggtcctgc tggatgacag gacccatctg
     1381 accattggat acagactgaa agacgccaac aagttcggct acccctttgt gatcatcgcg
     1441 ggcaagaggg ccctggacga ccctgcacat tttgaggttt ggtgccagaa caccggagag
     1501 gtggtcttcc tcaccagaga gggagtcctg gaattactga gccaagtgca ggttgtctaa
     1561 acgccccctg gacccctccc actgcatctc acagtctccg tgttcattct aatgctgcct
     1621 ttctatactg ctttccagag ctggtctccc cagaaagagg gcagctcatg gaaggtgaga
     1681 ccatgttagg aaaaccagtt gttatccagt catctgttcg gactatttgt atttaaagtc
     1741 attatcttga tccctttgtc tggctggccc tgctgccaca tatcattcct tttatattct
     1801 attcggaggt agtggctagg aggagccaag ttgtcatctt ggccctcagg agagtcactt
     1861 cccttctctc agtggagttt cccatgtgta ggatggggcc tccccagtgg ccgaggtcct
     1921 tccagctcca gcagtccaac cacgggcctc ttgctgcatt cggtccagag aggcagcccg
     1981 cctgtcttcc tccattgaga agttggcctg atggtctggg gagaagaatc aggacacctg
     2041 actgccactg actcactgga gacttggaca cgacccctcc cctgctggtg cctcagtttc
     2101 cccatctgtg atgtgagaaa atggaactag atctgtaagg tccttacagc tgtgactggc
     2161 tggttccccg agaggctcat gacaggcaga tcagatctga tctgttcctc tgatcctcca
     2221 tcgtctaagc tacccagaag gtaaatacaa ttagctaatt gcccccaaac cacctccaga
     2281 gacctggccc ttcctcttga ggcggcttag cactgaggtc gtgttacatt gattgaataa
     2341 agtcaaacta ttgggacgag ccttgcatgt taattggaaa cagtgctaac acctgccacg
     2401 ttaacggtgc agcagcttcc tgcctggaaa cgttcctttt tctactcttt ctccactcaa
     2461 aaaagaaaac tgggtggctg ggaagatgtg tgttaaacca ttgcttccca caggtgtgag
     2521 gggcagcagg cttcgagtgc cgcggcgact tcgtcctgcg cgcagagttg catcctagtg
     2581 ccacgcacga cagcggtgaa tattaaggtc tctgcctgag ccctggggag aactggcagc
     2641 tggctggagc tttcattgct cctgcttcca ggagcagaat caggttctcc atcctcggcc
     2701 cccagggtca tggcttgtcc aaacctaaca agaatctctc ggggccaagc tcaaagccac
     2761 cacctcctga aacatgctcg gcagctcctg gcagtggttc tgtctttggc tccccctatg
     2821 ctcacctgct cagcaccgac gcccttcttt ttcacttggc gggcacagct cattgtatgg
     2881 cggccagcct cttgtcgatg gtcagctccc tgaggctgga gtcctaggct gattcctagt
     2941 gcactgaagt tcttgtctcg gcctgttgtt cttcttgcca aacagcttcc ctgcagcttg
     3001 tgaccactgt tcctgccaga gtaacctcac ccccagcaca caccatcagg tttcctaatg
     3061 actcccaggc ctaccgctgg gctctgcgcc agcattcagg ccaggagaca gggattctga
     3121 gagcaaaccc agaaaggctg gattgtaagg caggaatctt acccttggct gcacagtgga
     3181 atcccctgtg tcccaccccg aggttctgtt ctggggtgtg gcctgggcat tggcggtttt
     3241 aaaactcccc agttgattct aattcgtaaa gtcggtggag tgccttctga ggctacgttg
     3301 caaggtggag tatttgagtc atttcggttg tgcgttgtca gattgatgtg agctctctgc
     3361 tttcagtggt ctgctcattc atttgtcgag ggcctgcacg tgccactgtg ctgtgaggcc
     3421 cttttatatg ccgtgttcac aacttaaaac tgtgcgaggt aggtcctgtg aaatcctcat
     3481 tttacagatg aggaaacctg aaactccatt taagcaactt aatcaaggat gcacagctat
     3541 tacgtatcag agctagaatc tgagtactga ccaacacctg tgcctgtccc actataccgc
     3601 atggcctctg cctgggcaaa atgattccaa taagtaaaag attatttatg tctgtctgat
     3661 caagttagcc tgaagtagag aaattagaat tcgtgcaaat gggtgcttta ttgttctgaa
     3721 tctttttttt ttttttgcgg tatgcgggcc tctcactgtg gtggcctctc cca
//
LOCUS       XM_032613695            3980 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prolyl-tRNA synthetase 2, mitochondrial
            (PARS2), transcript variant X2, mRNA.
ACCESSION   XM_032613695
VERSION     XM_032613695.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3980
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3980
                     /gene="PARS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744225"
     CDS             340..1767
                     /gene="PARS2"
                     /codon_start=1
                     /product="probable proline--tRNA ligase, mitochondrial"
                     /protein_id="XP_032469586.1"
                     /db_xref="GeneID:116744225"
                     /translation="MEGLLTRCRALPALATCSHQLSGYVPHRFHHRAPGRGKRLVLSR
                     MFQPQNLREDQVLSLEGRTGELTCKSQRLMLQVGLIHPASSGCYHLLPYTVRAMEKLV
                     RVIDQEMQAIGGQKVNMPSLSPAELWRATSRWDSMGKELLKLRDRHGKEYCLGPTHEE
                     AITALIASQQTLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEA
                     AQQTYSLVCDAYSSLFDRLGLQCVKVQADVGSIGGTMSHEFQLPVDVGEDRLAVCSSC
                     GFSANMETLDLSPTNCPACQGPLTKTKGIEVGHTFYLGTKYSSIFSAQFTNVHGKPSL
                     AEMGCYGLGVTRILAAVIEALATEDCIRWPGLLAPYQVCLISPKKGSKEEAASELTGH
                     LYDHITEAVPQLQGEVLLDDRTHLTIGYRLKDANKFGYPFVIIAGKRALDDPAHFEVW
                     CQNTGEVVFLTREGVLELLSQVQVV"
     misc_feature    532..1398
                     /gene="PARS2"
                     /note="Prolyl-tRNA synthetase (ProRS) class II core
                     catalytic domain. ProRS is a homodimer. It is responsible
                     for the attachment of proline to the 3' OH group of ribose
                     of the appropriate tRNA. This domain is primarily
                     responsible for ATP-dependent formation of...; Region:
                     ProRS_core_prok; cd00779"
                     /db_xref="CDD:238402"
     misc_feature    order(580..585,604..615,634..636,685..693,697..702,
                     760..762,766..780,832..834,895..897,946..948)
                     /gene="PARS2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238402"
     misc_feature    679..702
                     /gene="PARS2"
                     /note="motif 1; other site"
                     /db_xref="CDD:238402"
     misc_feature    order(808..810,814..816,904..906,910..912,934..942,
                     949..951,955..957,961..963,1249..1251,1255..1260,
                     1264..1266,1354..1362,1366..1368,1375..1377)
                     /gene="PARS2"
                     /note="active site"
                     /db_xref="CDD:238402"
     misc_feature    901..912
                     /gene="PARS2"
                     /note="motif 2; other site"
                     /db_xref="CDD:238402"
     misc_feature    1360..1377
                     /gene="PARS2"
                     /note="motif 3; other site"
                     /db_xref="CDD:238402"
     misc_feature    1444..1746
                     /gene="PARS2"
                     /note="HGTP anticodon binding domain, as found at the
                     C-terminus of histidyl, glycyl, threonyl and prolyl tRNA
                     synthetases, which are classified as a group of class II
                     aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon
                     binding domain is responsible for...; Region:
                     HGTP_anticodon; cl00266"
                     /db_xref="CDD:469699"
     misc_feature    order(1468..1473,1606..1608,1624..1626,1648..1650,
                     1681..1683,1687..1689)
                     /gene="PARS2"
                     /note="anticodon binding site [active]"
                     /db_xref="CDD:238379"
ORIGIN      
        1 tggcgcaggc gcggtggccc ggcgcggcgg tccctgcggg gtcggcgttc gctgggacta
       61 cggcggatcc ttaaccactg cgccacgagg gaagtcccgt aaacaggaaa atattgattt
      121 ttttttaaac ggcagtaaat ggcgagagaa gtacaatagt actttgatct gcaagggtat
      181 tagaaaagaa aggatttgca tccacaagat cggtgatggt tgcagaagtc tgttggagag
      241 cagcctgcgt tgactgctgc agggtgttgg atcacagtta acaccttctg ctcggctcgt
      301 ttttcttcag gcgcaggtgc ccccttacgc tgggctgtga tggaagggct gctgacaaga
      361 tgcagagcgc tgcctgcctt ggccacctgc agtcaccagc tctcggggta cgttcctcac
      421 aggtttcacc accgtgcccc cgggagaggg aagcgcttgg tgctgtcccg catgttccag
      481 ccccagaacc ttcgggaaga ccaggtgctc tctctagagg gcagaactgg cgagctgacc
      541 tgtaagagcc agcggctgat gctgcaggtg ggcctgattc acccagcaag ctccggctgt
      601 taccacctcc tgccttatac tgtccgtgcc atggagaagc ttgtgcgggt gatagaccag
      661 gagatgcagg ccatcggggg acagaaggtc aacatgccca gcctcagccc agcagagctc
      721 tggcgagcca ccagccggtg ggactctatg ggcaaggagc tgctaaaact tagagacaga
      781 cacggcaagg agtactgctt aggaccaact cacgaggaag ccattacagc cctgattgcc
      841 tcccagcaga cactgtccta caagcagctc ccgctcctgc tctaccaggt gacgaggaag
      901 tttcgggatg agcccaggcc ccgctttggt cttctccgag gccgagagtt ctacatgaag
      961 gacatgtaca ccttcgactc ctcccctgag gctgcccagc agacctacag cctggtgtgt
     1021 gatgcctaca gcagcctgtt tgacaggctg gggctgcagt gcgtcaaggt ccaggcagac
     1081 gtgggcagca tcgggggcac gatgtctcac gagttccagc tgccggtgga cgtcggagag
     1141 gaccggcttg cagtctgttc cagctgcggc ttttcggcca acatggagac tctggacttg
     1201 tcaccaacaa actgccctgc ttgccagggg ccactgacca aaaccaaagg catcgaggtc
     1261 gggcacacgt tttacctggg caccaagtac tcctccattt tcagtgccca gttcaccaat
     1321 gtccacggca agccatccct ggctgaaatg gggtgctatg gcttgggtgt gacacggatc
     1381 ttggccgctg tcattgaagc tctcgctaca gaagactgca tccgctggcc cggcctcctg
     1441 gccccttacc aagtctgcct catttccccc aagaagggca gtaaggagga ggcggcctca
     1501 gagctcacgg ggcacctgta tgaccacatc acagaggcag tgccgcagct ccaaggggag
     1561 gtcctgctgg atgacaggac ccatctgacc attggataca gactgaaaga cgccaacaag
     1621 ttcggctacc cctttgtgat catcgcgggc aagagggccc tggacgaccc tgcacatttt
     1681 gaggtttggt gccagaacac cggagaggtg gtcttcctca ccagagaggg agtcctggaa
     1741 ttactgagcc aagtgcaggt tgtctaaacg ccccctggac ccctcccact gcatctcaca
     1801 gtctccgtgt tcattctaat gctgcctttc tatactgctt tccagagctg gtctccccag
     1861 aaagagggca gctcatggaa ggtgagacca tgttaggaaa accagttgtt atccagtcat
     1921 ctgttcggac tatttgtatt taaagtcatt atcttgatcc ctttgtctgg ctggccctgc
     1981 tgccacatat cattcctttt atattctatt cggaggtagt ggctaggagg agccaagttg
     2041 tcatcttggc cctcaggaga gtcacttccc ttctctcagt ggagtttccc atgtgtagga
     2101 tggggcctcc ccagtggccg aggtccttcc agctccagca gtccaaccac gggcctcttg
     2161 ctgcattcgg tccagagagg cagcccgcct gtcttcctcc attgagaagt tggcctgatg
     2221 gtctggggag aagaatcagg acacctgact gccactgact cactggagac ttggacacga
     2281 cccctcccct gctggtgcct cagtttcccc atctgtgatg tgagaaaatg gaactagatc
     2341 tgtaaggtcc ttacagctgt gactggctgg ttccccgaga ggctcatgac aggcagatca
     2401 gatctgatct gttcctctga tcctccatcg tctaagctac ccagaaggta aatacaatta
     2461 gctaattgcc cccaaaccac ctccagagac ctggcccttc ctcttgaggc ggcttagcac
     2521 tgaggtcgtg ttacattgat tgaataaagt caaactattg ggacgagcct tgcatgttaa
     2581 ttggaaacag tgctaacacc tgccacgtta acggtgcagc agcttcctgc ctggaaacgt
     2641 tcctttttct actctttctc cactcaaaaa agaaaactgg gtggctggga agatgtgtgt
     2701 taaaccattg cttcccacag gtgtgagggg cagcaggctt cgagtgccgc ggcgacttcg
     2761 tcctgcgcgc agagttgcat cctagtgcca cgcacgacag cggtgaatat taaggtctct
     2821 gcctgagccc tggggagaac tggcagctgg ctggagcttt cattgctcct gcttccagga
     2881 gcagaatcag gttctccatc ctcggccccc agggtcatgg cttgtccaaa cctaacaaga
     2941 atctctcggg gccaagctca aagccaccac ctcctgaaac atgctcggca gctcctggca
     3001 gtggttctgt ctttggctcc ccctatgctc acctgctcag caccgacgcc cttctttttc
     3061 acttggcggg cacagctcat tgtatggcgg ccagcctctt gtcgatggtc agctccctga
     3121 ggctggagtc ctaggctgat tcctagtgca ctgaagttct tgtctcggcc tgttgttctt
     3181 cttgccaaac agcttccctg cagcttgtga ccactgttcc tgccagagta acctcacccc
     3241 cagcacacac catcaggttt cctaatgact cccaggccta ccgctgggct ctgcgccagc
     3301 attcaggcca ggagacaggg attctgagag caaacccaga aaggctggat tgtaaggcag
     3361 gaatcttacc cttggctgca cagtggaatc ccctgtgtcc caccccgagg ttctgttctg
     3421 gggtgtggcc tgggcattgg cggttttaaa actccccagt tgattctaat tcgtaaagtc
     3481 ggtggagtgc cttctgaggc tacgttgcaa ggtggagtat ttgagtcatt tcggttgtgc
     3541 gttgtcagat tgatgtgagc tctctgcttt cagtggtctg ctcattcatt tgtcgagggc
     3601 ctgcacgtgc cactgtgctg tgaggccctt ttatatgccg tgttcacaac ttaaaactgt
     3661 gcgaggtagg tcctgtgaaa tcctcatttt acagatgagg aaacctgaaa ctccatttaa
     3721 gcaacttaat caaggatgca cagctattac gtatcagagc tagaatctga gtactgacca
     3781 acacctgtgc ctgtcccact ataccgcatg gcctctgcct gggcaaaatg attccaataa
     3841 gtaaaagatt atttatgtct gtctgatcaa gttagcctga agtagagaaa ttagaattcg
     3901 tgcaaatggg tgctttattg ttctgaatct tttttttttt tttgcggtat gcgggcctct
     3961 cactgtggtg gcctctccca
//
LOCUS       XM_032613706            1414 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hydroxysteroid 11-beta dehydrogenase 1
            (HSD11B1), mRNA.
ACCESSION   XM_032613706
VERSION     XM_032613706.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1414
                     /gene="HSD11B1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 11 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744231"
     CDS             134..1030
                     /gene="HSD11B1"
                     /codon_start=1
                     /product="corticosteroid 11-beta-dehydrogenase isozyme 1"
                     /protein_id="XP_032469597.1"
                     /db_xref="GeneID:116744231"
                     /translation="MAFMKKYLLPILGIFLAYYYYSAKEEFRPEMLRGKRVIVTGASK
                     GIGREMAYHLARMGAHVVVTARSEEALKKVVSHCLELGASSAHYVAGTMENMTFAEQF
                     VAKAGKLMGGLDMLILNHITNTNNPMTVFIDDIDHVRKNMEVNFLSYVVLSGAAMPML
                     KQSNGSIVVVSSIAGKTANPLIAAYSASKFALDGFFSSIRVEYAVTNVNVSITLCILG
                     LIDTETAMTGTAGIYKAEASPKEECALEIIKGGALRQKEVYYDSSVLTPFLLGNPGRK
                     IMEFLSLRNYNMEIFINNQVLP"
     misc_feature    227..976
                     /gene="HSD11B1"
                     /note="11beta-hydroxysteroid dehydrogenase type 1
                     (11beta-HSD1)-like, classical (c) SDRs; Region:
                     11beta-HSD1_like_SDR_c; cd05332"
                     /db_xref="CDD:187593"
     misc_feature    order(254..271,326..334,404..412,488..496,500..502,
                     563..565,578..580,641..649,686..688,698..700,782..793,
                     797..799,803..808)
                     /gene="HSD11B1"
                     /note="NADP binding site [chemical binding]; other site"
                     /db_xref="CDD:187593"
     misc_feature    order(419..421,509..523,536..538,545..550,557..562,
                     569..574,584..586,593..595,659..682,689..694,701..706,
                     710..718,722..730,734..739,824..838,914..916,938..943,
                     947..949,953..958,962..970,974..976)
                     /gene="HSD11B1"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187593"
     misc_feature    order(494..496,503..505,647..655,668..670,677..679,
                     686..688,782..790,803..808,815..820)
                     /gene="HSD11B1"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187593"
     misc_feature    order(566..568,647..649,686..688,698..700)
                     /gene="HSD11B1"
                     /note="active site"
                     /db_xref="CDD:187593"
ORIGIN      
        1 aggaagagag agatgaaaca gaagggaagg cagaggagga gggagaaaag aagcaaaaga
       61 aaaaaggaga tcaataaaaa gaagtcaaat ctggttgaaa ccccaagggc tcctcgggcc
      121 aggtccctgt ctgatggctt ttatgaagaa atatctcctc cccattctgg ggatcttctt
      181 ggcctactac tactattctg cgaaggagga attcagacca gagatgcttc gaggaaaaag
      241 agtgattgtc acaggggcca gcaaggggat tggaagagag atggcctatc atctggcgag
      301 aatgggagcc catgtggtag tgacagcgag gtcagaagaa gctctaaaga aggtggtatc
      361 ccactgcctg gagctcggtg catcctcggc gcactacgtt gctggcacca tggagaacat
      421 gaccttcgcg gagcaatttg ttgccaaagc tggaaaactc atggggggac tagacatgct
      481 cattctgaac cacatcacca acaccaacaa ccctatgact gtattcatcg atgacattga
      541 ccacgtgcgc aaaaacatgg aggtcaactt cctgagttac gtggtcctga gcggggccgc
      601 catgcccatg ctgaagcaga gcaacgggag cattgttgtc gtctcctcga tagccgggaa
      661 aacagctaat ccacttattg ctgcctattc tgcaagcaag tttgctctgg atgggttctt
      721 ctcctctatc agggtggaat atgcagtgac caatgtcaat gtgtcgatca ccctctgtat
      781 ccttggcctc atagacacag aaacagccat gacaggaact gctgggatat acaaggcaga
      841 agcatctcca aaggaagaat gtgccctgga gattatcaaa gggggagctc tgcgccaaaa
      901 ggaagtatat tatgacagtt cggtcttgac tcctttcctg ctgggaaatc cggggaggaa
      961 gatcatggaa tttctctcct tacgaaatta taatatggaa atatttataa acaaccaggt
     1021 acttccttag ggctaggcat gataaggggg cttggaacaa ttctgcctga tatctacatg
     1081 agctccatcc tgaaggtatc tccccagaga gatatgagtg ttcccagagg gttgcaagtc
     1141 acatatcaca tctcaaaatt taaagaagct cctctaacac ttatgcagta gaaagtgtac
     1201 gaatgtcatg aaccagcaat tgtgaacctg atagtaacaa cagatataat tacaagatag
     1261 ttatatcaaa tttatctcat atgtaataat gttataatgc ttagtcaata tcaattataa
     1321 taaaggtcac ataaacttta taagttcata cctcatggct gtaacttcag ttcattcagt
     1381 acggctccat taaaaccata acctatacat gtga
//
LOCUS       XM_032613718             863 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus G0/G1 switch 2 (G0S2), mRNA.
ACCESSION   XM_032613718
VERSION     XM_032613718.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..863
                     /gene="G0S2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744239"
     CDS             192..503
                     /gene="G0S2"
                     /codon_start=1
                     /product="G0/G1 switch protein 2"
                     /protein_id="XP_032469609.1"
                     /db_xref="GeneID:116744239"
                     /translation="METVQELIPLAKELMAQKPRRNLVRLYVLGGVLALFGAMLGLME
                     TLCSPFTAADSLREREAAVAELQAARERQALRARALLEKSKQLEAVQGCRAPTNRLHA
                     S"
     misc_feature    192..500
                     /gene="G0S2"
                     /note="G0/G1 switch protein 2; Region: G0-G1_switch_2;
                     pfam15103"
                     /db_xref="CDD:464504"
ORIGIN      
        1 caggtgtcag ttgcggaatc tccatccgga agacccgcgg ctaccgagga aggggaggag
       61 gaggcggagg aggaggagga gaacgcagag ccgcgggacc cacgcacacc gtgaccgccc
      121 acccggcttg cgctgcctgc tgctcgctcg acgcccctag attactccta ccccgagagc
      181 ccggagccga gatggaaact gtccaggagc tgattcctct ggccaaggag ctgatggcgc
      241 agaagcccag acggaatctg gtgaggctgt acgtgctggg cggcgtgctg gcgctcttcg
      301 gcgccatgct cggcctgatg gagaccttgt gcagcccctt cacggccgcc gacagcctgc
      361 gggagcggga ggcagcggtg gccgagctgc aggccgcccg ggaacgacag gccctccggg
      421 cgcgggccct gctggagaaa agcaagcagc tggaggccgt ccagggctgc cgggccccga
      481 ccaaccggct gcacgcctcg taggaacctt gggggccggc ggagggaggg ggagagagac
      541 acacagggag aggagagtga ggcagagcgc gagggtcggg ctcgagtgag cgtctcgtgc
      601 tgtttggact aacgagaagc tactgatttt agaactgaac taccacgtgg acccaccaaa
      661 aggcgtttgg gattgagttt tgctgctgtg cagcactgca gaaagatgac atgtccagaa
      721 ccttccagct atctgactgc atccagcatt ttgcactagg gtgaacgggg gagaaatgct
      781 ttttatatta ttattgttat cgttattagg tagtaccgtg accaccattt tgcattttga
      841 aataaaaaac gttttgtatt cta
//
LOCUS       XM_032613729            1717 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ephrin A3 (EFNA3), mRNA.
ACCESSION   XM_032613729
VERSION     XM_032613729.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1717
                     /gene="EFNA3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 84%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744243"
     CDS             1..717
                     /gene="EFNA3"
                     /codon_start=1
                     /product="ephrin-A3"
                     /protein_id="XP_032469620.1"
                     /db_xref="GeneID:116744243"
                     /translation="MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHL
                     RREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRAGYRTCNAS
                     QGFKRWECNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLR
                     MKVFVCCASTSHSGEKPVPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPK
                     REHLPLAVGIAFFLMTLLAS"
     misc_feature    91..498
                     /gene="EFNA3"
                     /note="Ectodomain of Ephrin A; Region:
                     Ephrin-A_Ectodomain; cd10425"
                     /db_xref="CDD:259896"
     misc_feature    order(172..174,313..327,361..366,385..402,406..411)
                     /gene="EFNA3"
                     /note="receptor binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:259896"
ORIGIN      
        1 atggcggcgg ctccgctgct gctgctgctg ctgcttgtgc ccgtgccgct gctgccgctg
       61 ctggcccaag ggcccggggg ggcgctggga aaccggcatg cggtgtactg gaacagctcc
      121 aaccagcacc tgcggcgaga gggctacaca gtgcaggtga atgtgaacga ttatctggat
      181 atttactgcc cgcactacaa cagctcaggg gtgggcccgg gggcggggcc agggcccgga
      241 ggcggggcgg agcagtacgt gctgtatatg gtgagccggg caggctaccg cacctgcaac
      301 gccagccaag gcttcaagcg ctgggagtgc aaccgaccgc acgctcccca cagccccatc
      361 aagttctcgg agaagttcca gcgctacagc gccttctctc tgggctacga gttccacgcg
      421 ggccacgagt actactacat ctccacgccc acccacaatc tgcactggaa gtgtctgagg
      481 atgaaggtgt tcgtctgctg cgcctccaca tcgcactccg gggagaagcc ggtccccact
      541 ctcccccagt tcaccatggg ccccaatgtg aagatcaacg tgctggaaga ctttgaggga
      601 gagaaccccc aggtgcccaa gcttgagaag agcatcagcg ggaccagccc caagcgggaa
      661 cacctgcccc tggcggtggg catcgccttc ttccttatga cactcttggc ctcctagctc
      721 tgccccctcc cttggcaggg agagatggag tgggactggg acagagcagg gaggctttgg
      781 cctctccaag ggaagcctag ccttggggcc tagacccctc ctctgatggc tggaagtggg
      841 gtctgcacca tacatctgtg cccacccctt ctgccccctc cccaccaagt agggcactgt
      901 agtggaccag gcacagggac aaccaagggt tccaagtggc cttgtggctc tggtaatgtt
      961 tggtaccaaa cccggggggc cataaggggc agtgttcagg actccctgcc ccctggtacc
     1021 tttctctgac ccctggtgcc ctcccccctt gtcccccccg agagagagac aaatgtgccc
     1081 cagagagagc aaatcgaagt gtgggagaca cccccaatca ctctcttcca ggggcagaac
     1141 atggggaggg gactggatgg gcgaaggggt ggcaccgcct gctgccccct tcccctgttt
     1201 acagcaataa gcacgtcctt ctccccctac tcccactccc aggactgtgg tttggattga
     1261 ctccaagttt acaagtagac acccctgggg gggccgtcag tggacaaggg tgacaagggg
     1321 tgggcattgg ggtgccaggc aggcatgtac agactctata tctctatata taatgtacag
     1381 atggacagaa tccctccccc tccttaaccc cctgaccttc cttgacatcc ccttccagct
     1441 tcagacccct tccccaccag gctaggcccc ccactggggg accacctggc ccctcttttg
     1501 tcttctgtga agacaggacc tatgcaacgc acagacactt ttggagaccg tgagacaaca
     1561 acgcccctct cccctccagc cctgagcggg gacccagctc ccaggacctt gccctgccca
     1621 tcctctgtgg tccccaccca ttctcctggg cctttttcaa gtgctttggc tgtgactttc
     1681 atactctgct cttagtctaa aaaaataaac tggagat
//
LOCUS       XM_032613744            1277 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ephrin A4 (EFNA4), transcript variant X1,
            mRNA.
ACCESSION   XM_032613744
VERSION     XM_032613744.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1277
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1277
                     /gene="EFNA4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744249"
     CDS             78..692
                     /gene="EFNA4"
                     /codon_start=1
                     /product="ephrin-A4 isoform X1"
                     /protein_id="XP_032469635.1"
                     /db_xref="GeneID:116744249"
                     /translation="MRLQPLLRTVLWAALLSSPLRGGCGLRHEVYWNSSNPRLLRGDA
                     VVELGLKDYLDIFCPHYEGPGPPEGPETFALYMVDWPGYEACRAEGPGAFKRWECSLP
                     FAPFGPVRFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESPGQCLRLQVSVCCKEDK
                     PESAHPVGSPGESGTSGWQGGATPSPLCLLLLLLLPILRLLRVL"
     misc_feature    156..542
                     /gene="EFNA4"
                     /note="Ectodomain of Ephrin A; Region:
                     Ephrin-A_Ectodomain; cd10425"
                     /db_xref="CDD:259896"
     misc_feature    order(234..236,357..371,405..410,429..446,450..455)
                     /gene="EFNA4"
                     /note="receptor binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:259896"
ORIGIN      
        1 tgtacctttc tcggcgcgac tgtgaagcgg gacgggccgg gcccgcccgg gccagagcag
       61 accagacccc gggggcgatg cggctgcagc ccctgctgcg gactgtcctc tgggccgcgc
      121 tcctcagctc ccctctgcga ggaggctgtg gcctccgcca cgaggtctac tggaactcca
      181 gtaaccccag gctgcttcga ggagacgccg tggtggagct gggcctcaag gattacctag
      241 acatcttctg cccacactat gagggtccag ggccccctga gggccctgag acatttgcgt
      301 tatacatggt ggactggcca ggctatgagg cctgccgggc cgaggggccg ggtgcattca
      361 agcgctggga gtgctccctg cctttcgctc cctttggccc tgttcgattc tcagagaaga
      421 ttcagcgctt cacgcccttc tcccttggct tcgaattctt gcctggagag acctactact
      481 acatctcagt gccaactccg gagagtcctg gccagtgctt gaggctccag gtgtctgtct
      541 gctgcaagga ggacaagcct gagtcagccc atcctgttgg gagccctgga gagagtggca
      601 cgtcagggtg gcaagggggg gccactccca gccccctctg tctcttgctg ctgctgctgc
      661 tcccaattct gcgtctcctg agagttctct gagccaagcg gacccttcct gccaccccca
      721 ggaaccagag ccctcccaag actccccgga ggagggcccc tgccccctac ctgagctggg
      781 agggccaagc cagacagaca agatggaata gtgatggggg aggtcagagg gtctggggtg
      841 acccttccag gtgccggcct cctcatcaca ggctgaagac gagctgcagg ggagctgcag
      901 acagccctgg gcaccctgga acagaggcaa gacaaacata gggtctctgt cagctgcttt
      961 gatattctca tcccatcccc caggaagact gggatttgat gggatcggat ccttgagcct
     1021 gctgggggcc aaggccgaag acctggggac aggtgattgc tggaccaggt caagcaggaa
     1081 gcccaggctt gccatctgtg cccagtgccc tgtgggcctc ttccctgggg cagcaccttt
     1141 cctccccagg gggtcaccca cttgtcttct gtgaagacgg acttgccatg aggtcgaatt
     1201 tcatgccaat ttgtattttt ataagtgtct ggaccaagcc ttcaataaac cacccatctt
     1261 tttgttgctt tccccaa
//
LOCUS       XM_032613751            1274 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ephrin A4 (EFNA4), transcript variant X2,
            mRNA.
ACCESSION   XM_032613751
VERSION     XM_032613751.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1274
                     /gene="EFNA4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744249"
     CDS             78..689
                     /gene="EFNA4"
                     /codon_start=1
                     /product="ephrin-A4 isoform X2"
                     /protein_id="XP_032469642.1"
                     /db_xref="GeneID:116744249"
                     /translation="MRLQPLLRTVLWAALLSSPLRGGCGLRHEVYWNSSNPRLLRGDA
                     VVELGLKDYLDIFCPHYEGPGPPEGPETFALYMVDWPGYEACRAEGPGAFKRWECSLP
                     FAPFGPVRFSEKIQRFTPFSLGFEFLPGETYYYILPTPESPGQCLRLQVSVCCKEDKP
                     ESAHPVGSPGESGTSGWQGGATPSPLCLLLLLLLPILRLLRVL"
     misc_feature    156..539
                     /gene="EFNA4"
                     /note="Ectodomain of Ephrin A; Region:
                     Ephrin-A_Ectodomain; cd10425"
                     /db_xref="CDD:259896"
     misc_feature    order(234..236,357..371,405..410,429..446,450..455)
                     /gene="EFNA4"
                     /note="receptor binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:259896"
ORIGIN      
        1 tgtacctttc tcggcgcgac tgtgaagcgg gacgggccgg gcccgcccgg gccagagcag
       61 accagacccc gggggcgatg cggctgcagc ccctgctgcg gactgtcctc tgggccgcgc
      121 tcctcagctc ccctctgcga ggaggctgtg gcctccgcca cgaggtctac tggaactcca
      181 gtaaccccag gctgcttcga ggagacgccg tggtggagct gggcctcaag gattacctag
      241 acatcttctg cccacactat gagggtccag ggccccctga gggccctgag acatttgcgt
      301 tatacatggt ggactggcca ggctatgagg cctgccgggc cgaggggccg ggtgcattca
      361 agcgctggga gtgctccctg cctttcgctc cctttggccc tgttcgattc tcagagaaga
      421 ttcagcgctt cacgcccttc tcccttggct tcgaattctt gcctggagag acctactact
      481 acatcttgcc aactccggag agtcctggcc agtgcttgag gctccaggtg tctgtctgct
      541 gcaaggagga caagcctgag tcagcccatc ctgttgggag ccctggagag agtggcacgt
      601 cagggtggca agggggggcc actcccagcc ccctctgtct cttgctgctg ctgctgctcc
      661 caattctgcg tctcctgaga gttctctgag ccaagcggac ccttcctgcc acccccagga
      721 accagagccc tcccaagact ccccggagga gggcccctgc cccctacctg agctgggagg
      781 gccaagccag acagacaaga tggaatagtg atgggggagg tcagagggtc tggggtgacc
      841 cttccaggtg ccggcctcct catcacaggc tgaagacgag ctgcagggga gctgcagaca
      901 gccctgggca ccctggaaca gaggcaagac aaacataggg tctctgtcag ctgctttgat
      961 attctcatcc catcccccag gaagactggg atttgatggg atcggatcct tgagcctgct
     1021 gggggccaag gccgaagacc tggggacagg tgattgctgg accaggtcaa gcaggaagcc
     1081 caggcttgcc atctgtgccc agtgccctgt gggcctcttc cctggggcag cacctttcct
     1141 ccccaggggg tcacccactt gtcttctgtg aagacggact tgccatgagg tcgaatttca
     1201 tgccaatttg tatttttata agtgtctgga ccaagccttc aataaaccac ccatcttttt
     1261 gttgctttcc ccaa
//
LOCUS       XM_032613761            1134 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ephrin A4 (EFNA4), transcript variant X3,
            mRNA.
ACCESSION   XM_032613761
VERSION     XM_032613761.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1134
                     /gene="EFNA4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744249"
     CDS             78..668
                     /gene="EFNA4"
                     /codon_start=1
                     /product="ephrin-A4 isoform X3"
                     /protein_id="XP_032469652.1"
                     /db_xref="GeneID:116744249"
                     /translation="MRLQPLLRTVLWAALLSSPLRGGCGLRHEVYWNSSNPRLLRGDA
                     VVELGLKDYLDIFCPHYEGPGPPEGPETFALYMVDWPGYEACRAEGPGAFKRWECSLP
                     FAPFGPVRFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESPGQCLRLQVSVCCKEDT
                     DPSCHPQEPEPSQDSPEEGPCPLPELGGPSQTDKME"
     misc_feature    156..542
                     /gene="EFNA4"
                     /note="Ectodomain of Ephrin A; Region:
                     Ephrin-A_Ectodomain; cd10425"
                     /db_xref="CDD:259896"
     misc_feature    order(234..236,357..371,405..410,429..446,450..455)
                     /gene="EFNA4"
                     /note="receptor binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:259896"
ORIGIN      
        1 tgtacctttc tcggcgcgac tgtgaagcgg gacgggccgg gcccgcccgg gccagagcag
       61 accagacccc gggggcgatg cggctgcagc ccctgctgcg gactgtcctc tgggccgcgc
      121 tcctcagctc ccctctgcga ggaggctgtg gcctccgcca cgaggtctac tggaactcca
      181 gtaaccccag gctgcttcga ggagacgccg tggtggagct gggcctcaag gattacctag
      241 acatcttctg cccacactat gagggtccag ggccccctga gggccctgag acatttgcgt
      301 tatacatggt ggactggcca ggctatgagg cctgccgggc cgaggggccg ggtgcattca
      361 agcgctggga gtgctccctg cctttcgctc cctttggccc tgttcgattc tcagagaaga
      421 ttcagcgctt cacgcccttc tcccttggct tcgaattctt gcctggagag acctactact
      481 acatctcagt gccaactccg gagagtcctg gccagtgctt gaggctccag gtgtctgtct
      541 gctgcaagga ggacacggac ccttcctgcc acccccagga accagagccc tcccaagact
      601 ccccggagga gggcccctgc cccctacctg agctgggagg gccaagccag acagacaaga
      661 tggaatagtg atgggggagg tcagagggtc tggggtgacc cttccaggtg ccggcctcct
      721 catcacaggc tgaagacgag ctgcagggga gctgcagaca gccctgggca ccctggaaca
      781 gaggcaagac aaacataggg tctctgtcag ctgctttgat attctcatcc catcccccag
      841 gaagactggg atttgatggg atcggatcct tgagcctgct gggggccaag gccgaagacc
      901 tggggacagg tgattgctgg accaggtcaa gcaggaagcc caggcttgcc atctgtgccc
      961 agtgccctgt gggcctcttc cctggggcag cacctttcct ccccaggggg tcacccactt
     1021 gtcttctgtg aagacggact tgccatgagg tcgaatttca tgccaatttg tatttttata
     1081 agtgtctgga ccaagccttc aataaaccac ccatcttttt gttgctttcc ccaa
//
LOCUS       XM_032613773             793 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein L20
            (MRPL20), mRNA.
ACCESSION   XM_032613773
VERSION     XM_032613773.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..793
                     /gene="MRPL20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744264"
     CDS             84..533
                     /gene="MRPL20"
                     /codon_start=1
                     /product="39S ribosomal protein L20, mitochondrial"
                     /protein_id="XP_032469664.1"
                     /db_xref="GeneID:116744264"
                     /translation="MVFLTAQLWLRNRITDRYWRVQEVLKHARHFRGRKNRCYRLAVR
                     AVTRAFVQCTRARRLKKRNLRTLWISRVTAASQEHGLKYPAFILNLIKCQVELNRKVL
                     ADLAIYEPKTFKSLAALAKRRRQEGFAAALGDGKEPEGIFSRVAQHV"
     misc_feature    120..437
                     /gene="MRPL20"
                     /note="Ribosomal protein L20; Region: Ribosomal_L20;
                     cd07026"
                     /db_xref="CDD:197305"
     misc_feature    order(120..137,141..152,165..188,192..203,210..215,
                     225..230,237..281,285..293,300..302,312..314,330..335,
                     342..347,354..356,378..386)
                     /gene="MRPL20"
                     /note="23S rRNA binding site [nucleotide binding]; other
                     site"
                     /db_xref="CDD:197305"
     misc_feature    order(210..212,222..224,231..236,240..245,252..254,
                     369..380,387..389,405..410,426..431)
                     /gene="MRPL20"
                     /note="L21 binding site [polypeptide binding]; other site"
                     /db_xref="CDD:197305"
     misc_feature    order(273..275,282..287,294..296,303..308,312..314,
                     384..386,393..395,402..404)
                     /gene="MRPL20"
                     /note="L13 binding site [polypeptide binding]; other site"
                     /db_xref="CDD:197305"
ORIGIN      
        1 agctgacccg gaatcgctgg ggaggggtgg cgaccgaggt gcgacgctca ccttggtgag
       61 cagaggcgcg ggctgcgggc gccatggtct tcctcacggc gcagctctgg ctgcggaatc
      121 gcatcaccga ccgctactgg cgggtccagg aggtgctgaa gcacgcgcgg cacttccggg
      181 ggaggaagaa tcggtgctac cggctggccg tcagggctgt gacgcgagcg ttcgtgcagt
      241 gcacccgagc ccgcaggctg aagaagagga acctgcggac gctctggatc agtcgagtta
      301 cagctgcttc ccaggaacac ggcctgaagt acccagcatt catcctcaac ttgattaagt
      361 gccaggtgga gctcaacagg aaagtacttg cagatctagc catctacgaa ccaaagactt
      421 ttaaatcttt ggctgctttg gccaaaagga ggcgacagga aggatttgct gctgccttgg
      481 gggatgggaa ggagcccgaa ggcattttct ccagggtggc acagcacgtc tgagggggat
      541 gctgacaccc actgacggcc ctttgaggct gagcatcttg ggaaaagttt ccttcttccc
      601 ccatgtgatg attatactaa aatagggact aagagttatt tgtcaacaat gagtaagttt
      661 gacttgcatt tgtgttaatt tacatttcag taacaggcct gagagaaaag gccttatctg
      721 cctctcttgg cacaggttca gaaatctcac atggattgtg taaataaaat atttgtgttc
      781 tttggcacaa aca
//
LOCUS       XM_032613786            3910 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythroblast membrane associated protein
            (Scianna blood group) (ERMAP), transcript variant X1, mRNA.
ACCESSION   XM_032613786
VERSION     XM_032613786.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3910
                     /gene="ERMAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744269"
     CDS             1363..2517
                     /gene="ERMAP"
                     /codon_start=1
                     /product="erythroid membrane-associated protein isoform
                     X1"
                     /protein_id="XP_032469677.1"
                     /db_xref="GeneID:116744269"
                     /translation="MFLKSRPAKGYPLPPEIFNEIWMKMASSSGSWLSRCFITLVFLQ
                     LPLRVSAPSPGRFSSSAVALAVILPVLGIFIMVGIYIIWKQRRSKERLLYEHAMEVEN
                     LLSDHAKEKGRLYKALKKLRHELKLKRAAANSGWRRARLHFVTVTLDPDTAHPKLILS
                     EDRRCVKLGDTRQPVPNNPQRFDFVVSVLGSEYFIAGCHYWEVSVADKSKWALGVCSE
                     SVSRKGKVTASPANGHWLLRQNRKNEYEALTSPQTSFRLKEPPRCVGIFLDYEAGVIS
                     FYNVTNQSHIFTFTHSFSGPLRPFFEPCLHDGGKNMAPLIICSKLQKPEESTVPKPEE
                     KGLANGDVALQVDPLLFPAQAPELLPLTDMILSWPSDIGPALQGLKVPSF"
     misc_feature    1768..2316
                     /gene="ERMAP"
                     /note="SPRY domain; Region: SPRY; cl02614"
                     /db_xref="CDD:470632"
ORIGIN      
        1 ctgagggctt caggcattag aataaaagat gaacttttct caggcccacc tccggagtcc
       61 ttcctgatgt tcctgcctga tgcctcatct ccctgaacgg gcagagggat gttcccagct
      121 tggagactcc agctcagccg gtgagggaca aagggcccct aattccaaag tggtcaaaga
      181 agaaatttaa agggaaatta gaacatattt tgaatgtaat gaaaatgaaa accactacat
      241 atcaaaattt ccagatgtca ctaacgtaat acctacggag aaatttatga cgaagcaact
      301 aatgactata ttagaaaaga agacaaataa agtcatctgt attgtactaa atgacagtat
      361 taggaaagaa gaccacaaat caacaaccta agcaacaacg aaaataagca gaagaaagga
      421 agtaataaag atctgagcaa aaacaaatac aataggaaac agaaaaacat tagagaaaat
      481 caatgaaacc aaaagctgtt tctttgagat caataaaatt gataaacctc tagtcagact
      541 gatcaagaaa aaagagacac gaattaccat tatcaagaag gagagaggtg acattactac
      601 agattctata tatagtaaaa gaataataag gaaatattat gaacatactt atgccagtta
      661 attaaacaaa ttccttgaaa gaactcaaac taccaaaaat cactcaagaa gaaatagata
      721 acctgaatta ccctatactt attaaagaaa ttgaatgtgc atttacaaac cttctcataa
      781 agaaaactcc aggcccaggt gctttcctga tgatttccgt caaacatttg aggaagaaat
      841 aatattaatg ctgtacaaac tcttccagaa aattgaagag gagggaatac ttcttatttc
      901 attctttgtg accagcatta ccttaattac caaagttaga aaaggatatt acaaaagaag
      961 tacccatatc cctcatggac atagaggcaa aaattcttaa aattaaaaaa aattttatcc
     1021 aaagatatat aaaaaggaca cttcctcatg actgactgga gtttacccct agaatgcaag
     1081 gttggtataa tattcaaaaa aatcaaccaa tgtcatttac tatattaaca aactaaaatt
     1141 aaaaatcata cgcaaaaaat aggctcttca gccatttgca ggactcagct acaaccgttg
     1201 ctcccaggat agtgatccgt atgtacattg caccttcctc tggctccacg gtgattaaga
     1261 agtaacagca agatgcgctt gatttcttag aagctaacaa aataggattt gaagaaaaaa
     1321 atattgcaac cagtgaagac aactagaagt ggatgagaga aaatgttcct gaaaagtcga
     1381 ccagccaaag ggtaccccct gccacctgag attttcaatg aaatttggat gaagatggca
     1441 agttcctcag gctcctggct ctccagatgc ttcatcacac tcgtcttcct ccagttgcct
     1501 ttgcgtgtgt cagccccatc tccagggagg ttctcctcat cagcagtggc tcttgctgtg
     1561 atcctgcctg tcctggggat tttcatcatg gtgggcattt acatcatctg gaagcaaaga
     1621 aggtcaaaag agaggcttct ctatgaacac gcaatggagg tagaaaatct tctctcagac
     1681 catgcaaaag aaaaaggacg tctctataaa gccctcaaga aactccggca tgaactgaag
     1741 ttaaagagag ctgcagcaaa ctcaggctgg agaagggccc ggctacactt tgtgacggtg
     1801 accctggacc cagacacagc gcatcccaaa ctcatcctgt ctgaggatcg caggtgtgtg
     1861 aagcttggag acacaaggca gcctgtgccc aacaaccctc agcgatttga cttcgtcgtc
     1921 agtgtcctgg gctctgagta cttcatagct ggctgtcact actgggaggt gtctgtggca
     1981 gacaagagca aatgggccct gggggtgtgt agtgagtcag tgagcaggaa ggggaaggtc
     2041 accgcctcgc ccgccaatgg acactggctc ctgcgacaga atcgcaagaa tgagtacgag
     2101 gccctaacat ccccgcagac ctccttccgc ctgaaagagc ccccgcggtg tgtggggatt
     2161 tttctggact atgaagcagg agtcatttcc ttctacaacg tgaccaacca gtcccacatc
     2221 tttactttca cccacagttt ctctggcccc cttcgccctt tctttgaacc ttgccttcat
     2281 gatggaggga aaaacatggc acctctaatc atctgttcta aactccaaaa accggaagaa
     2341 tcaactgtcc ccaagccaga agaaaaaggt cttgctaatg gagacgtggc tctgcaggtg
     2401 gaccctcttc tgttccccgc tcaggcacca gagctcctcc cactcacaga tatgatcctg
     2461 tcctggccct ctgacattgg cccagccctg caggggctca aggttccttc tttttaggga
     2521 tgagcctcat cacctgctcc ccagacgctc cagcccagtg ccctggattt cagtctcttg
     2581 gcctaaccac ctgattctgg accgtctctc ctcctttccc ccaggcccct ttgtggtttc
     2641 tcttgtacca actttctccc agggctcagt tctaaaccgt gtcttccttc tggggacttg
     2701 aagtttacat tgccctggaa gaattcttga agaccaaatg atgggaattc cctggcagtc
     2761 cagtggttag gactccgtgc tttcactgct gagggcccag gttcaatccc tggttgggga
     2821 actaagatcc cgcaagccgt gtggtgtgag caaaaaaaaa aaaaaaaaca gacgggagaa
     2881 aaaccaaatg aacaatcaga ttaggtttag gcggtggtgt tgaatgtgtg tcactgagat
     2941 acaggggctc tttactcgag gggctgttta aaagcacttc atcctgcctc accctgcact
     3001 caggcttgta gtcatgaagt tatgatgacc agtgacttct cacttatcct gtcaagaact
     3061 gcttttctcc ttttctctgt tcaggcctct agcccccata gccagctttt taaaagtaaa
     3121 catgttttgg atcacacact cttccttctt tcttctggaa tatagggcag aaggccagag
     3181 gaattaaaaa aaaaagccac gcttttctat ttccttgatc ctgtttacag catagtttgg
     3241 tgacattcgg tgctaatgta catgttttca aagctaactt ggtgataacc aggtatgggg
     3301 actttaaacg tggtagccgt aatcctgaaa aaccccagga ggaagctggg aggtatggct
     3361 acaaacagag cagctcagct gtgtgtggcc ttgaaaaggc agcagtgggt taggccatct
     3421 gttgcactgg catttttgaa tgccctctgg gattcagaga ggcccagcta gaaaaagtgg
     3481 cagttttaac caccagtgta ggagcttttg ttctataaga ccataatatt ggaaaacttg
     3541 actatttgtg gagcaaacag cctcttagat cagagagtat tgatctcaca taggaagttg
     3601 gtagaccagg tgtgaggata aaataatgaa cttgcttttt tggtgtgggt ttcagaaaga
     3661 accctaatca ctctcaagtc acaccacata tatgatctga cctctctgtg gtgatgttgg
     3721 ctatcagttt gcagatgggt acacagttct gcccaacaga aagtggctct atgtgtctgt
     3781 cagaagttct cttagtgcat gtattagggt tctccagaga aacagaatat gtattttatt
     3841 ttattttttt tgcggtacgc gggcctctca ctgttgtggc ctctcccgtt gtggagcaca
     3901 ggctccggac
//
LOCUS       XM_032613796            2639 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythroblast membrane associated protein
            (Scianna blood group) (ERMAP), transcript variant X2, mRNA.
ACCESSION   XM_032613796
VERSION     XM_032613796.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2639
                     /gene="ERMAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744269"
     CDS             92..1246
                     /gene="ERMAP"
                     /codon_start=1
                     /product="erythroid membrane-associated protein isoform
                     X2"
                     /protein_id="XP_032469687.1"
                     /db_xref="GeneID:116744269"
                     /translation="MPHLPERAEGCSQLGDSSSAVWMKMASSSGSWLSRCFITLVFLQ
                     LPLRVSAPSPGRFSSSAVALAVILPVLGIFIMVGIYIIWKQRRSKERLLYEHAMEVEN
                     LLSDHAKEKGRLYKALKKLRHELKLKRAAANSGWRRARLHFVTVTLDPDTAHPKLILS
                     EDRRCVKLGDTRQPVPNNPQRFDFVVSVLGSEYFIAGCHYWEVSVADKSKWALGVCSE
                     SVSRKGKVTASPANGHWLLRQNRKNEYEALTSPQTSFRLKEPPRCVGIFLDYEAGVIS
                     FYNVTNQSHIFTFTHSFSGPLRPFFEPCLHDGGKNMAPLIICSKLQKPEESTVPKPEE
                     KGLANGDVALQVDPLLFPAQAPELLPLTDMILSWPSDIGPALQGLKVPSF"
     misc_feature    497..1045
                     /gene="ERMAP"
                     /note="SPRY domain; Region: SPRY; cl02614"
                     /db_xref="CDD:470632"
ORIGIN      
        1 tggagcccct ggctgagggc ttcaggcatt agaataaaag atgaactttt ctcaggccca
       61 cctccggagt ccttcctgat gttcctgcct gatgcctcat ctccctgaac gggcagaggg
      121 atgttcccag cttggagact ccagctcagc cgtttggatg aagatggcaa gttcctcagg
      181 ctcctggctc tccagatgct tcatcacact cgtcttcctc cagttgcctt tgcgtgtgtc
      241 agccccatct ccagggaggt tctcctcatc agcagtggct cttgctgtga tcctgcctgt
      301 cctggggatt ttcatcatgg tgggcattta catcatctgg aagcaaagaa ggtcaaaaga
      361 gaggcttctc tatgaacacg caatggaggt agaaaatctt ctctcagacc atgcaaaaga
      421 aaaaggacgt ctctataaag ccctcaagaa actccggcat gaactgaagt taaagagagc
      481 tgcagcaaac tcaggctgga gaagggcccg gctacacttt gtgacggtga ccctggaccc
      541 agacacagcg catcccaaac tcatcctgtc tgaggatcgc aggtgtgtga agcttggaga
      601 cacaaggcag cctgtgccca acaaccctca gcgatttgac ttcgtcgtca gtgtcctggg
      661 ctctgagtac ttcatagctg gctgtcacta ctgggaggtg tctgtggcag acaagagcaa
      721 atgggccctg ggggtgtgta gtgagtcagt gagcaggaag gggaaggtca ccgcctcgcc
      781 cgccaatgga cactggctcc tgcgacagaa tcgcaagaat gagtacgagg ccctaacatc
      841 cccgcagacc tccttccgcc tgaaagagcc cccgcggtgt gtggggattt ttctggacta
      901 tgaagcagga gtcatttcct tctacaacgt gaccaaccag tcccacatct ttactttcac
      961 ccacagtttc tctggccccc ttcgcccttt ctttgaacct tgccttcatg atggagggaa
     1021 aaacatggca cctctaatca tctgttctaa actccaaaaa ccggaagaat caactgtccc
     1081 caagccagaa gaaaaaggtc ttgctaatgg agacgtggct ctgcaggtgg accctcttct
     1141 gttccccgct caggcaccag agctcctccc actcacagat atgatcctgt cctggccctc
     1201 tgacattggc ccagccctgc aggggctcaa ggttccttct ttttagggat gagcctcatc
     1261 acctgctccc cagacgctcc agcccagtgc cctggatttc agtctcttgg cctaaccacc
     1321 tgattctgga ccgtctctcc tcctttcccc caggcccctt tgtggtttct cttgtaccaa
     1381 ctttctccca gggctcagtt ctaaaccgtg tcttccttct ggggacttga agtttacatt
     1441 gccctggaag aattcttgaa gaccaaatga tgggaattcc ctggcagtcc agtggttagg
     1501 actccgtgct ttcactgctg agggcccagg ttcaatccct ggttggggaa ctaagatccc
     1561 gcaagccgtg tggtgtgagc aaaaaaaaaa aaaaaaacag acgggagaaa aaccaaatga
     1621 acaatcagat taggtttagg cggtggtgtt gaatgtgtgt cactgagata caggggctct
     1681 ttactcgagg ggctgtttaa aagcacttca tcctgcctca ccctgcactc aggcttgtag
     1741 tcatgaagtt atgatgacca gtgacttctc acttatcctg tcaagaactg cttttctcct
     1801 tttctctgtt caggcctcta gcccccatag ccagcttttt aaaagtaaac atgttttgga
     1861 tcacacactc ttccttcttt cttctggaat atagggcaga aggccagagg aattaaaaaa
     1921 aaaagccacg cttttctatt tccttgatcc tgtttacagc atagtttggt gacattcggt
     1981 gctaatgtac atgttttcaa agctaacttg gtgataacca ggtatgggga ctttaaacgt
     2041 ggtagccgta atcctgaaaa accccaggag gaagctggga ggtatggcta caaacagagc
     2101 agctcagctg tgtgtggcct tgaaaaggca gcagtgggtt aggccatctg ttgcactggc
     2161 atttttgaat gccctctggg attcagagag gcccagctag aaaaagtggc agttttaacc
     2221 accagtgtag gagcttttgt tctataagac cataatattg gaaaacttga ctatttgtgg
     2281 agcaaacagc ctcttagatc agagagtatt gatctcacat aggaagttgg tagaccaggt
     2341 gtgaggataa aataatgaac ttgctttttt ggtgtgggtt tcagaaagaa ccctaatcac
     2401 tctcaagtca caccacatat atgatctgac ctctctgtgg tgatgttggc tatcagtttg
     2461 cagatgggta cacagttctg cccaacagaa agtggctcta tgtgtctgtc agaagttctc
     2521 ttagtgcatg tattagggtt ctccagagaa acagaatatg tattttattt tatttttttt
     2581 gcggtacgcg ggcctctcac tgttgtggcc tctcccgttg tggagcacag gctccggac
//
LOCUS       XM_032613805            2659 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus erythroblast membrane associated protein
            (Scianna blood group) (ERMAP), transcript variant X3, mRNA.
ACCESSION   XM_032613805
VERSION     XM_032613805.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2659
                     /gene="ERMAP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744269"
     CDS             178..1266
                     /gene="ERMAP"
                     /codon_start=1
                     /product="erythroid membrane-associated protein isoform
                     X3"
                     /protein_id="XP_032469696.1"
                     /db_xref="GeneID:116744269"
                     /translation="MKMASSSGSWLSRCFITLVFLQLPLRVSAPSPGRFSSSAVALAV
                     ILPVLGIFIMVGIYIIWKQRRSKERLLYEHAMEVENLLSDHAKEKGRLYKALKKLRHE
                     LKLKRAAANSGWRRARLHFVTVTLDPDTAHPKLILSEDRRCVKLGDTRQPVPNNPQRF
                     DFVVSVLGSEYFIAGCHYWEVSVADKSKWALGVCSESVSRKGKVTASPANGHWLLRQN
                     RKNEYEALTSPQTSFRLKEPPRCVGIFLDYEAGVISFYNVTNQSHIFTFTHSFSGPLR
                     PFFEPCLHDGGKNMAPLIICSKLQKPEESTVPKPEEKGLANGDVALQVDPLLFPAQAP
                     ELLPLTDMILSWPSDIGPALQGLKVPSF"
     misc_feature    517..1065
                     /gene="ERMAP"
                     /note="SPRY domain; Region: SPRY; cl02614"
                     /db_xref="CDD:470632"
ORIGIN      
        1 ctgagggctt caggcattag aataaaagat gaacttttct caggcccacc tccggagtcc
       61 ttcctgatgt tcctgcctga tgcctcatct ccctgaacgg gcagagggat gttcccagct
      121 tggagactcc agctcagccg gtgagggaca aagggcccct aattccaaag tgtttggatg
      181 aagatggcaa gttcctcagg ctcctggctc tccagatgct tcatcacact cgtcttcctc
      241 cagttgcctt tgcgtgtgtc agccccatct ccagggaggt tctcctcatc agcagtggct
      301 cttgctgtga tcctgcctgt cctggggatt ttcatcatgg tgggcattta catcatctgg
      361 aagcaaagaa ggtcaaaaga gaggcttctc tatgaacacg caatggaggt agaaaatctt
      421 ctctcagacc atgcaaaaga aaaaggacgt ctctataaag ccctcaagaa actccggcat
      481 gaactgaagt taaagagagc tgcagcaaac tcaggctgga gaagggcccg gctacacttt
      541 gtgacggtga ccctggaccc agacacagcg catcccaaac tcatcctgtc tgaggatcgc
      601 aggtgtgtga agcttggaga cacaaggcag cctgtgccca acaaccctca gcgatttgac
      661 ttcgtcgtca gtgtcctggg ctctgagtac ttcatagctg gctgtcacta ctgggaggtg
      721 tctgtggcag acaagagcaa atgggccctg ggggtgtgta gtgagtcagt gagcaggaag
      781 gggaaggtca ccgcctcgcc cgccaatgga cactggctcc tgcgacagaa tcgcaagaat
      841 gagtacgagg ccctaacatc cccgcagacc tccttccgcc tgaaagagcc cccgcggtgt
      901 gtggggattt ttctggacta tgaagcagga gtcatttcct tctacaacgt gaccaaccag
      961 tcccacatct ttactttcac ccacagtttc tctggccccc ttcgcccttt ctttgaacct
     1021 tgccttcatg atggagggaa aaacatggca cctctaatca tctgttctaa actccaaaaa
     1081 ccggaagaat caactgtccc caagccagaa gaaaaaggtc ttgctaatgg agacgtggct
     1141 ctgcaggtgg accctcttct gttccccgct caggcaccag agctcctccc actcacagat
     1201 atgatcctgt cctggccctc tgacattggc ccagccctgc aggggctcaa ggttccttct
     1261 ttttagggat gagcctcatc acctgctccc cagacgctcc agcccagtgc cctggatttc
     1321 agtctcttgg cctaaccacc tgattctgga ccgtctctcc tcctttcccc caggcccctt
     1381 tgtggtttct cttgtaccaa ctttctccca gggctcagtt ctaaaccgtg tcttccttct
     1441 ggggacttga agtttacatt gccctggaag aattcttgaa gaccaaatga tgggaattcc
     1501 ctggcagtcc agtggttagg actccgtgct ttcactgctg agggcccagg ttcaatccct
     1561 ggttggggaa ctaagatccc gcaagccgtg tggtgtgagc aaaaaaaaaa aaaaaaacag
     1621 acgggagaaa aaccaaatga acaatcagat taggtttagg cggtggtgtt gaatgtgtgt
     1681 cactgagata caggggctct ttactcgagg ggctgtttaa aagcacttca tcctgcctca
     1741 ccctgcactc aggcttgtag tcatgaagtt atgatgacca gtgacttctc acttatcctg
     1801 tcaagaactg cttttctcct tttctctgtt caggcctcta gcccccatag ccagcttttt
     1861 aaaagtaaac atgttttgga tcacacactc ttccttcttt cttctggaat atagggcaga
     1921 aggccagagg aattaaaaaa aaaagccacg cttttctatt tccttgatcc tgtttacagc
     1981 atagtttggt gacattcggt gctaatgtac atgttttcaa agctaacttg gtgataacca
     2041 ggtatgggga ctttaaacgt ggtagccgta atcctgaaaa accccaggag gaagctggga
     2101 ggtatggcta caaacagagc agctcagctg tgtgtggcct tgaaaaggca gcagtgggtt
     2161 aggccatctg ttgcactggc atttttgaat gccctctggg attcagagag gcccagctag
     2221 aaaaagtggc agttttaacc accagtgtag gagcttttgt tctataagac cataatattg
     2281 gaaaacttga ctatttgtgg agcaaacagc ctcttagatc agagagtatt gatctcacat
     2341 aggaagttgg tagaccaggt gtgaggataa aataatgaac ttgctttttt ggtgtgggtt
     2401 tcagaaagaa ccctaatcac tctcaagtca caccacatat atgatctgac ctctctgtgg
     2461 tgatgttggc tatcagtttg cagatgggta cacagttctg cccaacagaa agtggctcta
     2521 tgtgtctgtc agaagttctc ttagtgcatg tattagggtt ctccagagaa acagaatatg
     2581 tattttattt tatttttttt gcggtacgcg ggcctctcac tgttgtggcc tctcccgttg
     2641 tggagcacag gctccggac
//
LOCUS       XM_032613830            1698 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD1b molecule (CD1B), transcript variant
            X1, mRNA.
ACCESSION   XM_032613830
VERSION     XM_032613830.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1698
                     /gene="CD1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 30 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744290"
     CDS             90..1094
                     /gene="CD1B"
                     /codon_start=1
                     /product="T-cell surface glycoprotein CD1b isoform X1"
                     /protein_id="XP_032469721.1"
                     /db_xref="GeneID:116744290"
                     /translation="MLLLPLLLLAVIVPGGDSKDAFQGPTSYHVIQILTFANSTWAQG
                     QSSGWLDDFQIHGWDSDSGTATFLKPWSKGNFSDEEIIELEGLFQAYFIGFTKEVQEY
                     VSKVQVEYPFVIQCIAGCKLHSGKSIGSFLRAALGGLDFASIKNHSCAPAPEGGSRAQ
                     QFCALVPQYKDIWDIIETLLSETCPRFLLGVLDAGKAELQRQVKPEAWLSSDPSPGPG
                     RLLLVCHVSGFYPKPVWVMWMRGEQKQSGTQRGDTVPNADGTWYLRVTLHVTAGEETG
                     LSCRVKHSSLGDQDIIIYWGPFRISHEPSPCLHFHLGSVTRSPETLSAQESTSSYFIK
                     "
     misc_feature    147..683
                     /gene="CD1B"
                     /note="MHC-I family domain; Region: MHC_I_3; pfam16497"
                     /db_xref="CDD:465144"
     misc_feature    696..974
                     /gene="CD1B"
                     /note="Immunoglobulin domain of Cluster of Differentiation
                     (CD) 1; member of the C1-set of Ig superfamily (IgSF)
                     domains; Region: IgC1_CD1; cd21029"
                     /db_xref="CDD:409620"
     misc_feature    699..725
                     /gene="CD1B"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409620"
     misc_feature    744..776
                     /gene="CD1B"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409620"
     misc_feature    order(777..785,864..866,939..941)
                     /gene="CD1B"
                     /note="MHC binding domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409620"
     misc_feature    789..809
                     /gene="CD1B"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409620"
     misc_feature    813..824
                     /gene="CD1B"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409620"
     misc_feature    831..857
                     /gene="CD1B"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409620"
     misc_feature    864..896
                     /gene="CD1B"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409620"
     misc_feature    915..938
                     /gene="CD1B"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409620"
     misc_feature    960..971
                     /gene="CD1B"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409620"
ORIGIN      
        1 gagaggaagt cacaatagag tactgagaaa aaggtttgct gaaattagag atcaaacagc
       61 agctctgagg gtcagaagtt cccaacgcaa tgctgcttct gccacttcta ttgctagcag
      121 ttattgtccc aggtggtgac agtaaggatg ctttccaggg gccaacctct taccatgtta
      181 tccagatttt gacctttgcc aacagcacct gggcacaagg tcaatcctca ggctggctgg
      241 atgattttca gattcatggc tgggacagtg actcgggcac tgccactttc ctgaagccct
      301 ggtccaaggg caacttcagt gatgaggaga ttattgagct ggagggccta ttccaagcct
      361 acttcattgg attcaccaag gaagtacagg aatatgtcag taaagtccag gttgaatacc
      421 cctttgtgat ccagtgcata gcaggctgta agttgcattc tgggaagtcc ataggaagct
      481 ttttgagggc agctttagga ggactggatt tcgcgagcat taagaatcat tcatgtgcac
      541 ctgccccaga gggcggcagc agggcgcagc agttctgtgc actcgtccct cagtacaaag
      601 acatctggga tatcatagag acgctcctct cagaaacctg ccctcggttt ctccttggtg
      661 tcctcgatgc agggaaggcc gaactacaga ggcaagtgaa gcccgaggcc tggctgtcca
      721 gtgaccccag tcctgggcct ggccgtctgt tgctggtatg ccatgtctca ggattctacc
      781 cgaaacctgt gtgggtgatg tggatgaggg gcgagcagaa gcagtctggc actcagcgag
      841 gtgataccgt gcccaatgct gatgggacat ggtatctccg agtaaccctg catgtgacgg
      901 ctggggagga gactggcctg agttgccgag tgaagcacag cagtctagga gaccaggaca
      961 tcatcatcta ctggggtcct ttcagaatat ctcatgagcc ctcaccatgt ctccatttcc
     1021 atttgggatc agtaaccagg agtccagaaa ctctgtcagc ccaggagtca acctcatcgt
     1081 atttcatcaa ataatcatca gatttggaca aatcagagtg cccatagttt gtaagataaa
     1141 tcacaattta tacactagca gaaaaataat taaaaattgt tattatgaga caatatcaat
     1201 agtagggtcc actcagattt catagatgtg aggtgagaaa gaatatacct cggaataagt
     1261 gaaatgatgt ccatgactta acagtgacat ccccttggct tcttatttga actcttttgt
     1321 tgtgattctg ctgaaatatc atttgttaaa gtgagctaac tataattatg ctgagataat
     1381 tgtatttgca gagatgctga actattttaa catagtatct ctgtctctgc ttggatgatt
     1441 ttctaaccat gagggccagc tgagcagctt ctttctccag gaagccttct ttaatgctac
     1501 agcgaaagta accctccctt gtgtgctgtc atgcagagat ccacattact ctgtacccac
     1561 aacgttgcag ttctttttgt ttttcttttc tttctactta taagttcctg gagagaaagg
     1621 tttgctctag atggatccca ggcaagatct ctcacttgca tatgtgtttg tttaataaaa
     1681 taatctaagt tgctataa
//
LOCUS       XM_032613835            1792 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD1b molecule (CD1B), transcript variant
            X2, mRNA.
ACCESSION   XM_032613835
VERSION     XM_032613835.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1792
                     /gene="CD1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 53 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744290"
     CDS             90..1091
                     /gene="CD1B"
                     /codon_start=1
                     /product="T-cell surface glycoprotein CD1b isoform X2"
                     /protein_id="XP_032469726.1"
                     /db_xref="GeneID:116744290"
                     /translation="MLLLPLLLLAVIVPGGDSKDAFQGPTSYHVIQILTFANSTWAQG
                     QSSGWLDDFQIHGWDSDSGTATFLKPWSKGNFSDEEIIELEGLFQAYFIGFTKEVQEY
                     VSKVQVEYPFVIQCIAGCKLHSGKSIGSFLRAALGGLDFASIKNHSCAPAPEGGSRAQ
                     QFCALVPQYKDIWDIIETLLSETCPRFLLGVLDAGKAELQRQVKPEAWLSSDPSPGPG
                     RLLLVCHVSGFYPKPVWVMWMRGEQKQSGTQRGDTVPNADGTWYLRVTLHVTAGEETG
                     LSCRVKHSSLGDQDIIIYWGHPTSVSLILLAILVPSLVLLICLALWFLRRWSFQNIS"
     misc_feature    147..683
                     /gene="CD1B"
                     /note="MHC-I family domain; Region: MHC_I_3; pfam16497"
                     /db_xref="CDD:465144"
     misc_feature    696..974
                     /gene="CD1B"
                     /note="Immunoglobulin domain of Cluster of Differentiation
                     (CD) 1; member of the C1-set of Ig superfamily (IgSF)
                     domains; Region: IgC1_CD1; cd21029"
                     /db_xref="CDD:409620"
     misc_feature    699..725
                     /gene="CD1B"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409620"
     misc_feature    744..776
                     /gene="CD1B"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409620"
     misc_feature    order(777..785,864..866,939..941)
                     /gene="CD1B"
                     /note="MHC binding domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409620"
     misc_feature    789..809
                     /gene="CD1B"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409620"
     misc_feature    813..824
                     /gene="CD1B"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409620"
     misc_feature    831..857
                     /gene="CD1B"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409620"
     misc_feature    864..896
                     /gene="CD1B"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409620"
     misc_feature    915..938
                     /gene="CD1B"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409620"
     misc_feature    960..971
                     /gene="CD1B"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409620"
ORIGIN      
        1 gagaggaagt cacaatagag tactgagaaa aaggtttgct gaaattagag atcaaacagc
       61 agctctgagg gtcagaagtt cccaacgcaa tgctgcttct gccacttcta ttgctagcag
      121 ttattgtccc aggtggtgac agtaaggatg ctttccaggg gccaacctct taccatgtta
      181 tccagatttt gacctttgcc aacagcacct gggcacaagg tcaatcctca ggctggctgg
      241 atgattttca gattcatggc tgggacagtg actcgggcac tgccactttc ctgaagccct
      301 ggtccaaggg caacttcagt gatgaggaga ttattgagct ggagggccta ttccaagcct
      361 acttcattgg attcaccaag gaagtacagg aatatgtcag taaagtccag gttgaatacc
      421 cctttgtgat ccagtgcata gcaggctgta agttgcattc tgggaagtcc ataggaagct
      481 ttttgagggc agctttagga ggactggatt tcgcgagcat taagaatcat tcatgtgcac
      541 ctgccccaga gggcggcagc agggcgcagc agttctgtgc actcgtccct cagtacaaag
      601 acatctggga tatcatagag acgctcctct cagaaacctg ccctcggttt ctccttggtg
      661 tcctcgatgc agggaaggcc gaactacaga ggcaagtgaa gcccgaggcc tggctgtcca
      721 gtgaccccag tcctgggcct ggccgtctgt tgctggtatg ccatgtctca ggattctacc
      781 cgaaacctgt gtgggtgatg tggatgaggg gcgagcagaa gcagtctggc actcagcgag
      841 gtgataccgt gcccaatgct gatgggacat ggtatctccg agtaaccctg catgtgacgg
      901 ctggggagga gactggcctg agttgccgag tgaagcacag cagtctagga gaccaggaca
      961 tcatcatcta ctggggtcac cccacctccg tcagcttgat acttttggca atattagtgc
     1021 cctccttggt ccttttgata tgtcttgcat tatggttttt gaggcgctgg tcctttcaga
     1081 atatctcatg agccctcacc atgtctccat ttccatttgg gatcagtaac caggagtcca
     1141 gaaactctgt cagcccagga gtcaacctca tcgtatttca tcaaataatc atcagatttg
     1201 gacaaatcag agtgcccata gtttgtaaga taaatcacaa tttatacact agcagaaaaa
     1261 taattaaaaa ttgttattat gagacaatat caatagtagg gtccactcag atttcataga
     1321 tgtgaggtga gaaagaatat acctcggaat aagtgaaatg atgtccatga cttaacagtg
     1381 acatcccctt ggcttcttat ttgaactctt ttgttgtgat tctgctgaaa tatcatttgt
     1441 taaagtgagc taactataat tatgctgaga taattgtatt tgcagagatg ctgaactatt
     1501 ttaacatagt atctctgtct ctgcttggat gattttctaa ccatgagggc cagctgagca
     1561 gcttctttct ccaggaagcc ttctttaatg ctacagcgaa agtaaccctc ccttgtgtgc
     1621 tgtcatgcag agatccacat tactctgtac ccacaacgtt gcagttcttt ttgtttttct
     1681 tttctttcta cttataagtt cctggagaga aaggtttgct ctagatggat cccaggcaag
     1741 atctctcact tgcatatgtg tttgtttaat aaaataatct aagttgctat aa
//
LOCUS       XM_032613844            1589 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CD1b molecule (CD1B), transcript variant
            X3, mRNA.
ACCESSION   XM_032613844
VERSION     XM_032613844.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1589
                     /gene="CD1B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744290"
     CDS             140..985
                     /gene="CD1B"
                     /codon_start=1
                     /product="T-cell surface glycoprotein CD1b isoform X3"
                     /protein_id="XP_032469735.1"
                     /db_xref="GeneID:116744290"
                     /translation="MIHGWDSDSGTATFLKPWSKGNFSDEEIIELEGLFQAYFIGFTK
                     EVQEYVSKVQVEYPFVIQCIAGCKLHSGKSIGSFLRAALGGLDFASIKNHSCAPAPEG
                     GSRAQQFCALVPQYKDIWDIIETLLSETCPRFLLGVLDAGKAELQRQVKPEAWLSSDP
                     SPGPGRLLLVCHVSGFYPKPVWVMWMRGEQKQSGTQRGDTVPNADGTWYLRVTLHVTA
                     GEETGLSCRVKHSSLGDQDIIIYWGPFRISHEPSPCLHFHLGSVTRSPETLSAQESTS
                     SYFIK"
     misc_feature    143..574
                     /gene="CD1B"
                     /note="MHC-I family domain; Region: MHC_I_3; pfam16497"
                     /db_xref="CDD:465144"
     misc_feature    587..865
                     /gene="CD1B"
                     /note="Immunoglobulin domain of Cluster of Differentiation
                     (CD) 1; member of the C1-set of Ig superfamily (IgSF)
                     domains; Region: IgC1_CD1; cd21029"
                     /db_xref="CDD:409620"
     misc_feature    590..616
                     /gene="CD1B"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409620"
     misc_feature    635..667
                     /gene="CD1B"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409620"
     misc_feature    order(668..676,755..757,830..832)
                     /gene="CD1B"
                     /note="MHC binding domain interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:409620"
     misc_feature    680..700
                     /gene="CD1B"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409620"
     misc_feature    704..715
                     /gene="CD1B"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409620"
     misc_feature    722..748
                     /gene="CD1B"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409620"
     misc_feature    755..787
                     /gene="CD1B"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409620"
     misc_feature    806..829
                     /gene="CD1B"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409620"
     misc_feature    851..862
                     /gene="CD1B"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409620"
ORIGIN      
        1 gtcacaatag agtactgaga aaaaggtttg ctgaaattag agatcaaaca gcagctctga
       61 gggtcagaag ttcccaacgc aatgctgctt ctgccacttc tattgctagc agttattgtc
      121 ccaggtggtg acagtaagga tgattcatgg ctgggacagt gactcgggca ctgccacttt
      181 cctgaagccc tggtccaagg gcaacttcag tgatgaggag attattgagc tggagggcct
      241 attccaagcc tacttcattg gattcaccaa ggaagtacag gaatatgtca gtaaagtcca
      301 ggttgaatac ccctttgtga tccagtgcat agcaggctgt aagttgcatt ctgggaagtc
      361 cataggaagc tttttgaggg cagctttagg aggactggat ttcgcgagca ttaagaatca
      421 ttcatgtgca cctgccccag agggcggcag cagggcgcag cagttctgtg cactcgtccc
      481 tcagtacaaa gacatctggg atatcataga gacgctcctc tcagaaacct gccctcggtt
      541 tctccttggt gtcctcgatg cagggaaggc cgaactacag aggcaagtga agcccgaggc
      601 ctggctgtcc agtgacccca gtcctgggcc tggccgtctg ttgctggtat gccatgtctc
      661 aggattctac ccgaaacctg tgtgggtgat gtggatgagg ggcgagcaga agcagtctgg
      721 cactcagcga ggtgataccg tgcccaatgc tgatgggaca tggtatctcc gagtaaccct
      781 gcatgtgacg gctggggagg agactggcct gagttgccga gtgaagcaca gcagtctagg
      841 agaccaggac atcatcatct actggggtcc tttcagaata tctcatgagc cctcaccatg
      901 tctccatttc catttgggat cagtaaccag gagtccagaa actctgtcag cccaggagtc
      961 aacctcatcg tatttcatca aataatcatc agatttggac aaatcagagt gcccatagtt
     1021 tgtaagataa atcacaattt atacactagc agaaaaataa ttaaaaattg ttattatgag
     1081 acaatatcaa tagtagggtc cactcagatt tcatagatgt gaggtgagaa agaatatacc
     1141 tcggaataag tgaaatgatg tccatgactt aacagtgaca tccccttggc ttcttatttg
     1201 aactcttttg ttgtgattct gctgaaatat catttgttaa agtgagctaa ctataattat
     1261 gctgagataa ttgtatttgc agagatgctg aactatttta acatagtatc tctgtctctg
     1321 cttggatgat tttctaacca tgagggccag ctgagcagct tctttctcca ggaagccttc
     1381 tttaatgcta cagcgaaagt aaccctccct tgtgtgctgt catgcagaga tccacattac
     1441 tctgtaccca caacgttgca gttctttttg tttttctttt ctttctactt ataagttcct
     1501 ggagagaaag gtttgctcta gatggatccc aggcaagatc tctcacttgc atatgtgttt
     1561 gtttaataaa ataatctaag ttgctataa
//
LOCUS       XM_032613856            2627 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tudor and KH domain containing (TDRKH),
            transcript variant X1, mRNA.
ACCESSION   XM_032613856
VERSION     XM_032613856.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2627
                     /gene="TDRKH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 12 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744302"
     CDS             95..1780
                     /gene="TDRKH"
                     /codon_start=1
                     /product="tudor and KH domain-containing protein isoform
                     X1"
                     /protein_id="XP_032469747.1"
                     /db_xref="GeneID:116744302"
                     /translation="MSTERTSWTSLSTIQKIALGLGIPASAVVAYILYRRYRESREER
                     LTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLIS
                     GFPVQVCKAKAAIHQILTESTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKINC
                     DKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPI
                     SVRREEVTEPAGAGKPALWKNTGTSLEQAAPLAVPPRKGGGDTSVVGPEERSCRKPND
                     DNLQKFGAQTSPETSMFEIPSPDFSFHADEFLEVYVSASEHPNHFWIQIVGSRSLQLD
                     KLVREMTQHYENSLPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFG
                     DNGYCPLRDLRVLRSDFLSLPFQAIECSLARIAPSGEQWEEEALDEFDRLTHCAGWKP
                     LVAKISSYVQSGISTWPKIHLYDTSDGKKLDIGLELVRKGYAVELPEDMEENRAVPVT
                     LHNVATETDVSLRSTVTETKKSPGEMAHTLSCLSLLEAASVSGDDNLEDDYVV"
     misc_feature    239..451
                     /gene="TDRKH"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt1; cd22428"
                     /db_xref="CDD:411856"
     misc_feature    order(278..280,284..292,296..310,317..322,329..334,
                     347..358)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411856"
     misc_feature    464..709
                     /gene="TDRKH"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt2; cd22429"
                     /db_xref="CDD:411857"
     misc_feature    order(494..496,500..508,512..526,533..538,545..550,
                     563..574)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411857"
     misc_feature    1076..1354
                     /gene="TDRKH"
                     /note="Tudor domain found in Tudor domain-containing
                     protein 2 (TDRD2) and similar proteins; Region:
                     Tudor_TDRD2; cd20412"
                     /db_xref="CDD:410483"
     misc_feature    order(1184..1186,1205..1207,1256..1258,1265..1267,
                     1271..1273)
                     /gene="TDRKH"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:410483"
ORIGIN      
        1 ggggaagtgg cggctgaagc taggaccgcg gggttccgag tggcggtgcg agtgagagga
       61 gacgacggcg tcaggcttga ggaggcagca gaaaatgtcc actgaacgga cttcttggac
      121 aagtttgtcc actattcaga aaatagcact gggcctcggg atcccagcca gtgcagtggt
      181 tgcctatatc ctataccgca gatataggga aagcagagaa gagcggctga cgtttgttgg
      241 ggaggatgac atcgagatag agatgcgagt cccccaggag gctgtgaagc tcatcattgg
      301 ccggcaagga gccaatatta aacagctacg aaaacagaca ggtgctcgga tcgatgtgga
      361 cacagaggat gtaggagatg agcgggtgct gcttatcagt ggttttcctg ttcaggtgtg
      421 caaggccaaa gcagcaattc atcagatcct gactgagagt accccagtgt ctgagcagct
      481 ctcagttccc cagagatctg tgggcagaat catagggaga ggcggcgaga caattcgttc
      541 tatctgtaag gcctcgggag ccaaaataaa ctgtgacaaa gaatcagagg ggacattgct
      601 actatcaaga cttataaaaa tctcaggaac acagaaggag gtggcagcag ctaagcattt
      661 gatactggag aaagtttcag aagatgaaga acttaggaag agaattgctc attctgcaga
      721 aaccagagtc ccacggaagc agccaatcag cgtaagaaga gaggaagtga cagagccagc
      781 tggggctgga aagccagctt tatggaaaaa cactggcact agcttggagc aggctgcacc
      841 tctggcagtt cctccccgca aaggaggtgg cgacacgtct gttgtaggac cagaagagcg
      901 ttcctgcagg aaacctaatg atgacaacct tcagaagttt ggagcccaga ccagtccaga
      961 gacatccatg tttgaaatcc ccagtccaga cttcagtttc catgctgatg aattcctaga
     1021 agtctatgtc tctgcctctg aacatcctaa ccacttctgg atccaaatcg ttggctcccg
     1081 cagcctgcaa ctggataagc ttgtcaggga gatgacccag cactatgaaa acagtctgcc
     1141 tgaagacttg actgtgcatg taggagacat tgtcgcagca cctttaccta caaatggttc
     1201 atggtatcga gcccgggtcc ttggcacctt ggagaatggg aacctggacc tctacttcgt
     1261 tgactttgga gataatggat attgtccact gagagacctc agggtgctca ggagtgactt
     1321 cctaagcctt ccatttcaag caatagagtg tagtctggca cggatagccc cctcaggtga
     1381 acaatgggaa gaggaagctt tggatgagtt tgacagactc actcactgtg ctgggtggaa
     1441 gcccctggtg gccaagatct ctagctacgt ccagtctggg atctcaactt ggcccaagat
     1501 ccacttatac gacactagcg atgggaagaa acttgatatt gggttagaat tagttcgtaa
     1561 aggatacgca gttgagcttc ctgaagacat ggaagaaaac agagccgtcc cagtaacgtt
     1621 gcacaatgtg gccacagaaa cagatgtctc tctccgcagc acggtcactg agaccaagaa
     1681 gagccctgga gagatggcac ataccctgtc ctgcctcagt ttattagaag ctgcctctgt
     1741 gtctggtgat gataaccttg aagatgacta cgtagtctga agtcaccttc agttgcctca
     1801 gccatccgct ttgcggattt ggcataagat ttggtgcctg gagagaggag cctgtgatag
     1861 agatcagtgc agttcttcct tcattatata cacgatctgg cttgctgtgg accaaatgca
     1921 tttgctcctg gactaccaga aagtgtgagg ggtggaggga gacaaacaca tgcccctact
     1981 cccccgccac ccctgtgcca cttccggtgt ttgagtcctg ctgcgctact tccagcctgc
     2041 tcagtgtgca gctagctccc ctcgaccact cacaaagcac accactgcta ggctgtgtcc
     2101 tttggaggct gggaaacagc cagggtttgg ttattggaaa tgatgattct gcagactcct
     2161 gactcacctc atcaggtgac tggttaagga gagtttctta agtggtgaac tcaaagactg
     2221 cagttgagtc aggaggcaaa ggcaaaactc agcataatta tattgaaaag cctcaggaag
     2281 tgggaagagg atactgcctc ccagcctcaa ctgctgatat gttattggag acaagatttt
     2341 tgaaacaatg ctccaactat ttcccagtaa actttggtta aaatacaagt agacaaggag
     2401 agaggtgact caggaaatat tctaaattgc tggtatagta tctataatat atatgtatac
     2461 acacgcagcc atagagctca tgtagctgtt caaatcattt ggggttcctt tgctgaataa
     2521 agttctcaag aaaattgttt aaaactaaat gctggttgaa tcacaaggtg gaaacaagtc
     2581 tgtgggtgtc ttgtgaactg aaatctggtg aaaattgcca aacacct
//
LOCUS       XM_032613864            2654 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tudor and KH domain containing (TDRKH),
            transcript variant X2, mRNA.
ACCESSION   XM_032613864
VERSION     XM_032613864.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2654
                     /gene="TDRKH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744302"
     CDS             122..1807
                     /gene="TDRKH"
                     /codon_start=1
                     /product="tudor and KH domain-containing protein isoform
                     X1"
                     /protein_id="XP_032469755.1"
                     /db_xref="GeneID:116744302"
                     /translation="MSTERTSWTSLSTIQKIALGLGIPASAVVAYILYRRYRESREER
                     LTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLIS
                     GFPVQVCKAKAAIHQILTESTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKINC
                     DKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPI
                     SVRREEVTEPAGAGKPALWKNTGTSLEQAAPLAVPPRKGGGDTSVVGPEERSCRKPND
                     DNLQKFGAQTSPETSMFEIPSPDFSFHADEFLEVYVSASEHPNHFWIQIVGSRSLQLD
                     KLVREMTQHYENSLPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFG
                     DNGYCPLRDLRVLRSDFLSLPFQAIECSLARIAPSGEQWEEEALDEFDRLTHCAGWKP
                     LVAKISSYVQSGISTWPKIHLYDTSDGKKLDIGLELVRKGYAVELPEDMEENRAVPVT
                     LHNVATETDVSLRSTVTETKKSPGEMAHTLSCLSLLEAASVSGDDNLEDDYVV"
     misc_feature    266..478
                     /gene="TDRKH"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt1; cd22428"
                     /db_xref="CDD:411856"
     misc_feature    order(305..307,311..319,323..337,344..349,356..361,
                     374..385)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411856"
     misc_feature    491..736
                     /gene="TDRKH"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt2; cd22429"
                     /db_xref="CDD:411857"
     misc_feature    order(521..523,527..535,539..553,560..565,572..577,
                     590..601)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411857"
     misc_feature    1103..1381
                     /gene="TDRKH"
                     /note="Tudor domain found in Tudor domain-containing
                     protein 2 (TDRD2) and similar proteins; Region:
                     Tudor_TDRD2; cd20412"
                     /db_xref="CDD:410483"
     misc_feature    order(1211..1213,1232..1234,1283..1285,1292..1294,
                     1298..1300)
                     /gene="TDRKH"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:410483"
ORIGIN      
        1 ggctgaagct aggaccgcgg ggttccgagt ggcggtgcga gtgagaggag acgacggcgt
       61 caggcttgag gtgtgaggcg aagcgcgcga cggctgactc gaggagcaga ggcagcagaa
      121 aatgtccact gaacggactt cttggacaag tttgtccact attcagaaaa tagcactggg
      181 cctcgggatc ccagccagtg cagtggttgc ctatatccta taccgcagat atagggaaag
      241 cagagaagag cggctgacgt ttgttgggga ggatgacatc gagatagaga tgcgagtccc
      301 ccaggaggct gtgaagctca tcattggccg gcaaggagcc aatattaaac agctacgaaa
      361 acagacaggt gctcggatcg atgtggacac agaggatgta ggagatgagc gggtgctgct
      421 tatcagtggt tttcctgttc aggtgtgcaa ggccaaagca gcaattcatc agatcctgac
      481 tgagagtacc ccagtgtctg agcagctctc agttccccag agatctgtgg gcagaatcat
      541 agggagaggc ggcgagacaa ttcgttctat ctgtaaggcc tcgggagcca aaataaactg
      601 tgacaaagaa tcagagggga cattgctact atcaagactt ataaaaatct caggaacaca
      661 gaaggaggtg gcagcagcta agcatttgat actggagaaa gtttcagaag atgaagaact
      721 taggaagaga attgctcatt ctgcagaaac cagagtccca cggaagcagc caatcagcgt
      781 aagaagagag gaagtgacag agccagctgg ggctggaaag ccagctttat ggaaaaacac
      841 tggcactagc ttggagcagg ctgcacctct ggcagttcct ccccgcaaag gaggtggcga
      901 cacgtctgtt gtaggaccag aagagcgttc ctgcaggaaa cctaatgatg acaaccttca
      961 gaagtttgga gcccagacca gtccagagac atccatgttt gaaatcccca gtccagactt
     1021 cagtttccat gctgatgaat tcctagaagt ctatgtctct gcctctgaac atcctaacca
     1081 cttctggatc caaatcgttg gctcccgcag cctgcaactg gataagcttg tcagggagat
     1141 gacccagcac tatgaaaaca gtctgcctga agacttgact gtgcatgtag gagacattgt
     1201 cgcagcacct ttacctacaa atggttcatg gtatcgagcc cgggtccttg gcaccttgga
     1261 gaatgggaac ctggacctct acttcgttga ctttggagat aatggatatt gtccactgag
     1321 agacctcagg gtgctcagga gtgacttcct aagccttcca tttcaagcaa tagagtgtag
     1381 tctggcacgg atagccccct caggtgaaca atgggaagag gaagctttgg atgagtttga
     1441 cagactcact cactgtgctg ggtggaagcc cctggtggcc aagatctcta gctacgtcca
     1501 gtctgggatc tcaacttggc ccaagatcca cttatacgac actagcgatg ggaagaaact
     1561 tgatattggg ttagaattag ttcgtaaagg atacgcagtt gagcttcctg aagacatgga
     1621 agaaaacaga gccgtcccag taacgttgca caatgtggcc acagaaacag atgtctctct
     1681 ccgcagcacg gtcactgaga ccaagaagag ccctggagag atggcacata ccctgtcctg
     1741 cctcagttta ttagaagctg cctctgtgtc tggtgatgat aaccttgaag atgactacgt
     1801 agtctgaagt caccttcagt tgcctcagcc atccgctttg cggatttggc ataagatttg
     1861 gtgcctggag agaggagcct gtgatagaga tcagtgcagt tcttccttca ttatatacac
     1921 gatctggctt gctgtggacc aaatgcattt gctcctggac taccagaaag tgtgaggggt
     1981 ggagggagac aaacacatgc ccctactccc ccgccacccc tgtgccactt ccggtgtttg
     2041 agtcctgctg cgctacttcc agcctgctca gtgtgcagct agctcccctc gaccactcac
     2101 aaagcacacc actgctaggc tgtgtccttt ggaggctggg aaacagccag ggtttggtta
     2161 ttggaaatga tgattctgca gactcctgac tcacctcatc aggtgactgg ttaaggagag
     2221 tttcttaagt ggtgaactca aagactgcag ttgagtcagg aggcaaaggc aaaactcagc
     2281 ataattatat tgaaaagcct caggaagtgg gaagaggata ctgcctccca gcctcaactg
     2341 ctgatatgtt attggagaca agatttttga aacaatgctc caactatttc ccagtaaact
     2401 ttggttaaaa tacaagtaga caaggagaga ggtgactcag gaaatattct aaattgctgg
     2461 tatagtatct ataatatata tgtatacaca cgcagccata gagctcatgt agctgttcaa
     2521 atcatttggg gttcctttgc tgaataaagt tctcaagaaa attgtttaaa actaaatgct
     2581 ggttgaatca caaggtggaa acaagtctgt gggtgtcttg tgaactgaaa tctggtgaaa
     2641 attgccaaac acct
//
LOCUS       XM_032613873            2610 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tudor and KH domain containing (TDRKH),
            transcript variant X3, mRNA.
ACCESSION   XM_032613873
VERSION     XM_032613873.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2610
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2610
                     /gene="TDRKH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744302"
     CDS             78..1763
                     /gene="TDRKH"
                     /codon_start=1
                     /product="tudor and KH domain-containing protein isoform
                     X1"
                     /protein_id="XP_032469764.1"
                     /db_xref="GeneID:116744302"
                     /translation="MSTERTSWTSLSTIQKIALGLGIPASAVVAYILYRRYRESREER
                     LTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLIS
                     GFPVQVCKAKAAIHQILTESTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKINC
                     DKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPI
                     SVRREEVTEPAGAGKPALWKNTGTSLEQAAPLAVPPRKGGGDTSVVGPEERSCRKPND
                     DNLQKFGAQTSPETSMFEIPSPDFSFHADEFLEVYVSASEHPNHFWIQIVGSRSLQLD
                     KLVREMTQHYENSLPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFG
                     DNGYCPLRDLRVLRSDFLSLPFQAIECSLARIAPSGEQWEEEALDEFDRLTHCAGWKP
                     LVAKISSYVQSGISTWPKIHLYDTSDGKKLDIGLELVRKGYAVELPEDMEENRAVPVT
                     LHNVATETDVSLRSTVTETKKSPGEMAHTLSCLSLLEAASVSGDDNLEDDYVV"
     misc_feature    222..434
                     /gene="TDRKH"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt1; cd22428"
                     /db_xref="CDD:411856"
     misc_feature    order(261..263,267..275,279..293,300..305,312..317,
                     330..341)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411856"
     misc_feature    447..692
                     /gene="TDRKH"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt2; cd22429"
                     /db_xref="CDD:411857"
     misc_feature    order(477..479,483..491,495..509,516..521,528..533,
                     546..557)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411857"
     misc_feature    1059..1337
                     /gene="TDRKH"
                     /note="Tudor domain found in Tudor domain-containing
                     protein 2 (TDRD2) and similar proteins; Region:
                     Tudor_TDRD2; cd20412"
                     /db_xref="CDD:410483"
     misc_feature    order(1167..1169,1188..1190,1239..1241,1248..1250,
                     1254..1256)
                     /gene="TDRKH"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:410483"
ORIGIN      
        1 ggtgtgaggc gaagcgcgcg acggctgact cgaggagcag taaaggcggg gaccgggagc
       61 ggaggaggca gcagaaaatg tccactgaac ggacttcttg gacaagtttg tccactattc
      121 agaaaatagc actgggcctc gggatcccag ccagtgcagt ggttgcctat atcctatacc
      181 gcagatatag ggaaagcaga gaagagcggc tgacgtttgt tggggaggat gacatcgaga
      241 tagagatgcg agtcccccag gaggctgtga agctcatcat tggccggcaa ggagccaata
      301 ttaaacagct acgaaaacag acaggtgctc ggatcgatgt ggacacagag gatgtaggag
      361 atgagcgggt gctgcttatc agtggttttc ctgttcaggt gtgcaaggcc aaagcagcaa
      421 ttcatcagat cctgactgag agtaccccag tgtctgagca gctctcagtt ccccagagat
      481 ctgtgggcag aatcataggg agaggcggcg agacaattcg ttctatctgt aaggcctcgg
      541 gagccaaaat aaactgtgac aaagaatcag aggggacatt gctactatca agacttataa
      601 aaatctcagg aacacagaag gaggtggcag cagctaagca tttgatactg gagaaagttt
      661 cagaagatga agaacttagg aagagaattg ctcattctgc agaaaccaga gtcccacgga
      721 agcagccaat cagcgtaaga agagaggaag tgacagagcc agctggggct ggaaagccag
      781 ctttatggaa aaacactggc actagcttgg agcaggctgc acctctggca gttcctcccc
      841 gcaaaggagg tggcgacacg tctgttgtag gaccagaaga gcgttcctgc aggaaaccta
      901 atgatgacaa ccttcagaag tttggagccc agaccagtcc agagacatcc atgtttgaaa
      961 tccccagtcc agacttcagt ttccatgctg atgaattcct agaagtctat gtctctgcct
     1021 ctgaacatcc taaccacttc tggatccaaa tcgttggctc ccgcagcctg caactggata
     1081 agcttgtcag ggagatgacc cagcactatg aaaacagtct gcctgaagac ttgactgtgc
     1141 atgtaggaga cattgtcgca gcacctttac ctacaaatgg ttcatggtat cgagcccggg
     1201 tccttggcac cttggagaat gggaacctgg acctctactt cgttgacttt ggagataatg
     1261 gatattgtcc actgagagac ctcagggtgc tcaggagtga cttcctaagc cttccatttc
     1321 aagcaataga gtgtagtctg gcacggatag ccccctcagg tgaacaatgg gaagaggaag
     1381 ctttggatga gtttgacaga ctcactcact gtgctgggtg gaagcccctg gtggccaaga
     1441 tctctagcta cgtccagtct gggatctcaa cttggcccaa gatccactta tacgacacta
     1501 gcgatgggaa gaaacttgat attgggttag aattagttcg taaaggatac gcagttgagc
     1561 ttcctgaaga catggaagaa aacagagccg tcccagtaac gttgcacaat gtggccacag
     1621 aaacagatgt ctctctccgc agcacggtca ctgagaccaa gaagagccct ggagagatgg
     1681 cacataccct gtcctgcctc agtttattag aagctgcctc tgtgtctggt gatgataacc
     1741 ttgaagatga ctacgtagtc tgaagtcacc ttcagttgcc tcagccatcc gctttgcgga
     1801 tttggcataa gatttggtgc ctggagagag gagcctgtga tagagatcag tgcagttctt
     1861 ccttcattat atacacgatc tggcttgctg tggaccaaat gcatttgctc ctggactacc
     1921 agaaagtgtg aggggtggag ggagacaaac acatgcccct actcccccgc cacccctgtg
     1981 ccacttccgg tgtttgagtc ctgctgcgct acttccagcc tgctcagtgt gcagctagct
     2041 cccctcgacc actcacaaag cacaccactg ctaggctgtg tcctttggag gctgggaaac
     2101 agccagggtt tggttattgg aaatgatgat tctgcagact cctgactcac ctcatcaggt
     2161 gactggttaa ggagagtttc ttaagtggtg aactcaaaga ctgcagttga gtcaggaggc
     2221 aaaggcaaaa ctcagcataa ttatattgaa aagcctcagg aagtgggaag aggatactgc
     2281 ctcccagcct caactgctga tatgttattg gagacaagat ttttgaaaca atgctccaac
     2341 tatttcccag taaactttgg ttaaaataca agtagacaag gagagaggtg actcaggaaa
     2401 tattctaaat tgctggtata gtatctataa tatatatgta tacacacgca gccatagagc
     2461 tcatgtagct gttcaaatca tttggggttc ctttgctgaa taaagttctc aagaaaattg
     2521 tttaaaacta aatgctggtt gaatcacaag gtggaaacaa gtctgtgggt gtcttgtgaa
     2581 ctgaaatctg gtgaaaattg ccaaacacct
//
LOCUS       XM_032613881            2457 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tudor and KH domain containing (TDRKH),
            transcript variant X4, mRNA.
ACCESSION   XM_032613881
VERSION     XM_032613881.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2457
                     /gene="TDRKH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744302"
     CDS             93..1610
                     /gene="TDRKH"
                     /codon_start=1
                     /product="tudor and KH domain-containing protein isoform
                     X2"
                     /protein_id="XP_032469772.1"
                     /db_xref="GeneID:116744302"
                     /translation="MRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLL
                     ISGFPVQVCKAKAAIHQILTESTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKI
                     NCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQ
                     PISVRREEVTEPAGAGKPALWKNTGTSLEQAAPLAVPPRKGGGDTSVVGPEERSCRKP
                     NDDNLQKFGAQTSPETSMFEIPSPDFSFHADEFLEVYVSASEHPNHFWIQIVGSRSLQ
                     LDKLVREMTQHYENSLPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVD
                     FGDNGYCPLRDLRVLRSDFLSLPFQAIECSLARIAPSGEQWEEEALDEFDRLTHCAGW
                     KPLVAKISSYVQSGISTWPKIHLYDTSDGKKLDIGLELVRKGYAVELPEDMEENRAVP
                     VTLHNVATETDVSLRSTVTETKKSPGEMAHTLSCLSLLEAASVSGDDNLEDDYVV"
     misc_feature    93..281
                     /gene="TDRKH"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt1; cd22428"
                     /db_xref="CDD:411856"
     misc_feature    order(108..110,114..122,126..140,147..152,159..164,
                     177..188)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411856"
     misc_feature    294..539
                     /gene="TDRKH"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt2; cd22429"
                     /db_xref="CDD:411857"
     misc_feature    order(324..326,330..338,342..356,363..368,375..380,
                     393..404)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411857"
     misc_feature    906..1184
                     /gene="TDRKH"
                     /note="Tudor domain found in Tudor domain-containing
                     protein 2 (TDRD2) and similar proteins; Region:
                     Tudor_TDRD2; cd20412"
                     /db_xref="CDD:410483"
     misc_feature    order(1014..1016,1035..1037,1086..1088,1095..1097,
                     1101..1103)
                     /gene="TDRKH"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:410483"
ORIGIN      
        1 caggcttgag gtgtgaggcg aagcgcgcga cggctgactc gaggagcaaa gagcggctga
       61 cgtttgttgg ggaggatgac atcgagatag agatgcgagt cccccaggag gctgtgaagc
      121 tcatcattgg ccggcaagga gccaatatta aacagctacg aaaacagaca ggtgctcgga
      181 tcgatgtgga cacagaggat gtaggagatg agcgggtgct gcttatcagt ggttttcctg
      241 ttcaggtgtg caaggccaaa gcagcaattc atcagatcct gactgagagt accccagtgt
      301 ctgagcagct ctcagttccc cagagatctg tgggcagaat catagggaga ggcggcgaga
      361 caattcgttc tatctgtaag gcctcgggag ccaaaataaa ctgtgacaaa gaatcagagg
      421 ggacattgct actatcaaga cttataaaaa tctcaggaac acagaaggag gtggcagcag
      481 ctaagcattt gatactggag aaagtttcag aagatgaaga acttaggaag agaattgctc
      541 attctgcaga aaccagagtc ccacggaagc agccaatcag cgtaagaaga gaggaagtga
      601 cagagccagc tggggctgga aagccagctt tatggaaaaa cactggcact agcttggagc
      661 aggctgcacc tctggcagtt cctccccgca aaggaggtgg cgacacgtct gttgtaggac
      721 cagaagagcg ttcctgcagg aaacctaatg atgacaacct tcagaagttt ggagcccaga
      781 ccagtccaga gacatccatg tttgaaatcc ccagtccaga cttcagtttc catgctgatg
      841 aattcctaga agtctatgtc tctgcctctg aacatcctaa ccacttctgg atccaaatcg
      901 ttggctcccg cagcctgcaa ctggataagc ttgtcaggga gatgacccag cactatgaaa
      961 acagtctgcc tgaagacttg actgtgcatg taggagacat tgtcgcagca cctttaccta
     1021 caaatggttc atggtatcga gcccgggtcc ttggcacctt ggagaatggg aacctggacc
     1081 tctacttcgt tgactttgga gataatggat attgtccact gagagacctc agggtgctca
     1141 ggagtgactt cctaagcctt ccatttcaag caatagagtg tagtctggca cggatagccc
     1201 cctcaggtga acaatgggaa gaggaagctt tggatgagtt tgacagactc actcactgtg
     1261 ctgggtggaa gcccctggtg gccaagatct ctagctacgt ccagtctggg atctcaactt
     1321 ggcccaagat ccacttatac gacactagcg atgggaagaa acttgatatt gggttagaat
     1381 tagttcgtaa aggatacgca gttgagcttc ctgaagacat ggaagaaaac agagccgtcc
     1441 cagtaacgtt gcacaatgtg gccacagaaa cagatgtctc tctccgcagc acggtcactg
     1501 agaccaagaa gagccctgga gagatggcac ataccctgtc ctgcctcagt ttattagaag
     1561 ctgcctctgt gtctggtgat gataaccttg aagatgacta cgtagtctga agtcaccttc
     1621 agttgcctca gccatccgct ttgcggattt ggcataagat ttggtgcctg gagagaggag
     1681 cctgtgatag agatcagtgc agttcttcct tcattatata cacgatctgg cttgctgtgg
     1741 accaaatgca tttgctcctg gactaccaga aagtgtgagg ggtggaggga gacaaacaca
     1801 tgcccctact cccccgccac ccctgtgcca cttccggtgt ttgagtcctg ctgcgctact
     1861 tccagcctgc tcagtgtgca gctagctccc ctcgaccact cacaaagcac accactgcta
     1921 ggctgtgtcc tttggaggct gggaaacagc cagggtttgg ttattggaaa tgatgattct
     1981 gcagactcct gactcacctc atcaggtgac tggttaagga gagtttctta agtggtgaac
     2041 tcaaagactg cagttgagtc aggaggcaaa ggcaaaactc agcataatta tattgaaaag
     2101 cctcaggaag tgggaagagg atactgcctc ccagcctcaa ctgctgatat gttattggag
     2161 acaagatttt tgaaacaatg ctccaactat ttcccagtaa actttggtta aaatacaagt
     2221 agacaaggag agaggtgact caggaaatat tctaaattgc tggtatagta tctataatat
     2281 atatgtatac acacgcagcc atagagctca tgtagctgtt caaatcattt ggggttcctt
     2341 tgctgaataa agttctcaag aaaattgttt aaaactaaat gctggttgaa tcacaaggtg
     2401 gaaacaagtc tgtgggtgtc ttgtgaactg aaatctggtg aaaattgcca aacacct
//
LOCUS       XM_032613891            2479 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tudor and KH domain containing (TDRKH),
            transcript variant X5, mRNA.
ACCESSION   XM_032613891
VERSION     XM_032613891.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2479
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2479
                     /gene="TDRKH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744302"
     CDS             116..1633
                     /gene="TDRKH"
                     /codon_start=1
                     /product="tudor and KH domain-containing protein isoform
                     X2"
                     /protein_id="XP_032469782.1"
                     /db_xref="GeneID:116744302"
                     /translation="MRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLL
                     ISGFPVQVCKAKAAIHQILTESTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKI
                     NCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQ
                     PISVRREEVTEPAGAGKPALWKNTGTSLEQAAPLAVPPRKGGGDTSVVGPEERSCRKP
                     NDDNLQKFGAQTSPETSMFEIPSPDFSFHADEFLEVYVSASEHPNHFWIQIVGSRSLQ
                     LDKLVREMTQHYENSLPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVD
                     FGDNGYCPLRDLRVLRSDFLSLPFQAIECSLARIAPSGEQWEEEALDEFDRLTHCAGW
                     KPLVAKISSYVQSGISTWPKIHLYDTSDGKKLDIGLELVRKGYAVELPEDMEENRAVP
                     VTLHNVATETDVSLRSTVTETKKSPGEMAHTLSCLSLLEAASVSGDDNLEDDYVV"
     misc_feature    116..304
                     /gene="TDRKH"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt1; cd22428"
                     /db_xref="CDD:411856"
     misc_feature    order(131..133,137..145,149..163,170..175,182..187,
                     200..211)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411856"
     misc_feature    317..562
                     /gene="TDRKH"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in tudor and KH domain-containing protein (TDRKH)
                     and similar proteins; Region: KH-I_TDRKH_rpt2; cd22429"
                     /db_xref="CDD:411857"
     misc_feature    order(347..349,353..361,365..379,386..391,398..403,
                     416..427)
                     /gene="TDRKH"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:411857"
     misc_feature    929..1207
                     /gene="TDRKH"
                     /note="Tudor domain found in Tudor domain-containing
                     protein 2 (TDRD2) and similar proteins; Region:
                     Tudor_TDRD2; cd20412"
                     /db_xref="CDD:410483"
     misc_feature    order(1037..1039,1058..1060,1109..1111,1118..1120,
                     1124..1126)
                     /gene="TDRKH"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:410483"
ORIGIN      
        1 cggctgaagc taggaccgcg gggttccgag tggcggtgcg agtgagagga gacgacggcg
       61 tcaggcttga gaagagcggc tgacgtttgt tggggaggat gacatcgaga tagagatgcg
      121 agtcccccag gaggctgtga agctcatcat tggccggcaa ggagccaata ttaaacagct
      181 acgaaaacag acaggtgctc ggatcgatgt ggacacagag gatgtaggag atgagcgggt
      241 gctgcttatc agtggttttc ctgttcaggt gtgcaaggcc aaagcagcaa ttcatcagat
      301 cctgactgag agtaccccag tgtctgagca gctctcagtt ccccagagat ctgtgggcag
      361 aatcataggg agaggcggcg agacaattcg ttctatctgt aaggcctcgg gagccaaaat
      421 aaactgtgac aaagaatcag aggggacatt gctactatca agacttataa aaatctcagg
      481 aacacagaag gaggtggcag cagctaagca tttgatactg gagaaagttt cagaagatga
      541 agaacttagg aagagaattg ctcattctgc agaaaccaga gtcccacgga agcagccaat
      601 cagcgtaaga agagaggaag tgacagagcc agctggggct ggaaagccag ctttatggaa
      661 aaacactggc actagcttgg agcaggctgc acctctggca gttcctcccc gcaaaggagg
      721 tggcgacacg tctgttgtag gaccagaaga gcgttcctgc aggaaaccta atgatgacaa
      781 ccttcagaag tttggagccc agaccagtcc agagacatcc atgtttgaaa tccccagtcc
      841 agacttcagt ttccatgctg atgaattcct agaagtctat gtctctgcct ctgaacatcc
      901 taaccacttc tggatccaaa tcgttggctc ccgcagcctg caactggata agcttgtcag
      961 ggagatgacc cagcactatg aaaacagtct gcctgaagac ttgactgtgc atgtaggaga
     1021 cattgtcgca gcacctttac ctacaaatgg ttcatggtat cgagcccggg tccttggcac
     1081 cttggagaat gggaacctgg acctctactt cgttgacttt ggagataatg gatattgtcc
     1141 actgagagac ctcagggtgc tcaggagtga cttcctaagc cttccatttc aagcaataga
     1201 gtgtagtctg gcacggatag ccccctcagg tgaacaatgg gaagaggaag ctttggatga
     1261 gtttgacaga ctcactcact gtgctgggtg gaagcccctg gtggccaaga tctctagcta
     1321 cgtccagtct gggatctcaa cttggcccaa gatccactta tacgacacta gcgatgggaa
     1381 gaaacttgat attgggttag aattagttcg taaaggatac gcagttgagc ttcctgaaga
     1441 catggaagaa aacagagccg tcccagtaac gttgcacaat gtggccacag aaacagatgt
     1501 ctctctccgc agcacggtca ctgagaccaa gaagagccct ggagagatgg cacataccct
     1561 gtcctgcctc agtttattag aagctgcctc tgtgtctggt gatgataacc ttgaagatga
     1621 ctacgtagtc tgaagtcacc ttcagttgcc tcagccatcc gctttgcgga tttggcataa
     1681 gatttggtgc ctggagagag gagcctgtga tagagatcag tgcagttctt ccttcattat
     1741 atacacgatc tggcttgctg tggaccaaat gcatttgctc ctggactacc agaaagtgtg
     1801 aggggtggag ggagacaaac acatgcccct actcccccgc cacccctgtg ccacttccgg
     1861 tgtttgagtc ctgctgcgct acttccagcc tgctcagtgt gcagctagct cccctcgacc
     1921 actcacaaag cacaccactg ctaggctgtg tcctttggag gctgggaaac agccagggtt
     1981 tggttattgg aaatgatgat tctgcagact cctgactcac ctcatcaggt gactggttaa
     2041 ggagagtttc ttaagtggtg aactcaaaga ctgcagttga gtcaggaggc aaaggcaaaa
     2101 ctcagcataa ttatattgaa aagcctcagg aagtgggaag aggatactgc ctcccagcct
     2161 caactgctga tatgttattg gagacaagat ttttgaaaca atgctccaac tatttcccag
     2221 taaactttgg ttaaaataca agtagacaag gagagaggtg actcaggaaa tattctaaat
     2281 tgctggtata gtatctataa tatatatgta tacacacgca gccatagagc tcatgtagct
     2341 gttcaaatca tttggggttc ctttgctgaa taaagttctc aagaaaattg tttaaaacta
     2401 aatgctggtt gaatcacaag gtggaaacaa gtctgtgggt gtcttgtgaa ctgaaatctg
     2461 gtgaaaattg ccaaacacc
//
LOCUS       XM_032613905            1851 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lactamase beta like 1 (LACTBL1), mRNA.
ACCESSION   XM_032613905
VERSION     XM_032613905.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1851
                     /gene="LACTBL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins"
                     /db_xref="GeneID:116744325"
     CDS             100..1851
                     /gene="LACTBL1"
                     /codon_start=1
                     /product="putative beta-lactamase-like 1"
                     /protein_id="XP_032469796.1"
                     /db_xref="GeneID:116744325"
                     /translation="MERRKTQAGRQLSLLKGKQKWLFPVSCSFFFVLSVLMTGCFLWQ
                     YYLPKLKTGSLGPEVTSAPVRMCPQHPEPVPLAHPLPVLKEALKKVDRLLRQALSAPG
                     LAAMSAVVIHNDTVLWTGNFGRKNGSDPASGPPNEYTMYRISSISKIFPVLMLYRLWE
                     EGIVASLDDPLERYASTFTINNPLGMASAPEQKSLMDGLEEVGPAPRPSPVTLRRMAS
                     QLSGLPRRLRSTSLLWRGSTQEALNLLKDDVLVADPGTRCHYSTLAFSLLAHVLAAHT
                     AQGDYQHWILENVLEPLGMEDTGFDLTPPVRARLAAGFYGSGRPAPLYDLDWYRPSGQ
                     MYSTTADLAKLAMVLLGSRPQRLLRPDAAKTLLAPLLACPGAYFANETGTPWEFHAQR
                     GYRVVRKDGDLDGYAATFSLVPPLRLSLVLLLAGPRPPGPDLVAQVYDVLLPAMESAL
                     REAVLSPAPPPSARPFAGYFTFANLTFYEVRAGPAGELRLRQFGPRVEALVPPAFRTL
                     ALRHLRGRVFQLYVAREFPCALPLGDSWLSLEAQHGQLVNFYPLDHHGLSPGFDVPGL
                     NTYRVMRLSHKPVFKTQ"
     misc_feature    316..1341
                     /gene="LACTBL1"
                     /note="CubicO group peptidase, beta-lactamase class C
                     family [Defense mechanisms]; Region: AmpC; COG1680"
                     /db_xref="CDD:441286"
     misc_feature    <1540..1653
                     /gene="LACTBL1"
                     /note="indolepyruvate ferredoxin oxidoreductase;
                     Validated; Region: PRK09193"
                     /db_xref="CDD:236404"
ORIGIN      
        1 ggacctctct ttgccttctc tccactgact cagtttcttg tttacagggt ctcctgggct
       61 atagagctga ctcctcaagg ggctggaatc ttccacacca tggagagaag gaagacccag
      121 gctggccggc agctcagcct gctgaaaggg aaacagaagt ggctcttccc ggtttcctgc
      181 agcttcttct ttgtgctctc tgtgctcatg actggctgct tcctgtggca gtattacctc
      241 cccaagctga agaccggctc cttgggacca gaggtgactt ctgcccccgt gaggatgtgt
      301 ccccagcacc ctgagcctgt gcccctggcc caccccctcc ccgtgttgaa ggaggccctg
      361 aaaaaggtgg acaggctcct gcggcaggca ctgtctgccc caggcctggc tgctatgtct
      421 gcagttgtca tccacaacga cactgtgctc tggaccggga acttcgggag gaagaatggt
      481 tcagacccgg cttctgggcc ccccaatgag tacaccatgt accggatctc cagcatctcc
      541 aagatctttc ccgtgctgat gctgtatcgc ctgtgggagg agggcatcgt ggcctctcta
      601 gatgaccctc tggagcggta cgccagcacc ttcaccatta acaacccact gggcatggca
      661 tcagcgcccg aacaaaagag cttgatggat ggtctggagg aggtgggccc agccccaagg
      721 ccttcacccg tcaccctccg aaggatggcc agccagctct cagggctgcc ccgaaggctc
      781 cgttccactt cgctgctgtg gaggggcagc acccaggagg ccctgaacct gctcaaggat
      841 gatgtgctgg tggcagaccc aggaaccaga tgccattaca gcacgctggc cttctcgctt
      901 ctggcccatg tcctggcagc ccacaccgcc cagggtgact accagcactg gatcttggag
      961 aacgtgctgg aaccgctggg gatggaagac acaggcttcg atctgacacc tcctgtgcgt
     1021 gcccgcttgg cagctggctt ttatggcagc gggcggccgg cgccgctata cgatctcgac
     1081 tggtaccgcc cgtcgggcca gatgtactcg accaccgctg acctggccaa gctggccatg
     1141 gtgctcctgg gcagcaggcc ccagcggctt ctgcggccag acgcggctaa gacactactg
     1201 gcgccgctgc tggcctgccc gggcgcctac ttcgccaacg agactggcac accgtgggag
     1261 ttccatgcgc agcggggcta ccgcgtggtg cgcaaggacg gtgacctgga cggctacgct
     1321 gccaccttct ccctggtgcc gccgctgcgc ctgagcctcg tgctgctcct ggccgggccg
     1381 aggccgccag ggcctgacct ggtggctcag gtctacgatg tgcttctgcc ggctatggag
     1441 agtgccctcc gtgaggccgt gctcagcccg gctccgccgc ccagcgcacg acccttcgct
     1501 ggctacttca cttttgccaa tttgactttc tacgaagtgc gcgccgggcc ggcgggcgag
     1561 ctgcgcctgc gccagttcgg gccccgcgtg gaggcgctgg tgcccccggc gttccgcacg
     1621 ttggctctgc gccacctgcg tggccgcgtc ttccagctgt atgtggcccg cgagtttccg
     1681 tgcgcactgc cgctgggtga ctcctggctg tccctcgagg cccagcacgg gcagctcgtc
     1741 aacttctatc ctttggacca ccacgggctt tccccaggct tcgacgtgcc aggcctcaac
     1801 acgtaccggg tgatgcggct gtctcacaag ccagtattca agacccagtg a
//
LOCUS       XM_032613918            2519 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin dependent kinase inhibitor 2C
            (CDKN2C), mRNA.
ACCESSION   XM_032613918
VERSION     XM_032613918.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2519
                     /gene="CDKN2C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 6 long SRA reads, 7
                     Proteins, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744327"
     CDS             1224..1730
                     /gene="CDKN2C"
                     /codon_start=1
                     /product="cyclin-dependent kinase 4 inhibitor C"
                     /protein_id="XP_032469809.1"
                     /db_xref="GeneID:116744327"
                     /translation="MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV
                     MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE
                     GNLPLHLAAKEGHLPVVEFLVKHTACKVGHRNHQGDTACDLARLYRRNEVVSLMEGNR
                     AEGAANLQ"
     misc_feature    <1248..1727
                     /gene="CDKN2C"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(1332..1334,1338..1340,1350..1355,1359..1367,
                     1371..1376,1386..1388,1395..1397,1422..1424,1428..1430,
                     1434..1436,1446..1451,1458..1466,1470..1475,1485..1487,
                     1494..1496,1521..1523,1527..1529,1533..1535,1545..1550,
                     1557..1565,1569..1574,1584..1586,1593..1595,1623..1625)
                     /gene="CDKN2C"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1332..1424
                     /gene="CDKN2C"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1428..1523
                     /gene="CDKN2C"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1527..1625
                     /gene="CDKN2C"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 ctcagccgag cctccttaaa actctgccgt taaaatgggg gcgggttttt caactcaaaa
       61 agcgctcaat ttttttcttt tcaaaaaaag ctgatgaggt cggaaaaaag ggagaagaaa
      121 ccggcaccgt ctctgcagcg gcaacagaag cagcaattgt ttgagcgaaa aaagaagcga
      181 gggagggagg gaaggaaaag accagaaagg ggcacgacgc acaagtgtct gtaggggtga
      241 agggagcagg gaccggcgat ttggggggga ccagctacaa aagaaactgt cactgggagc
      301 gctgcggctc gggaggaagc ggtgctaccc agctcggctc cagggcacag ctggctggcg
      361 gccgctgccc tatcggctgc acaggctggg ggcacaggcc aggggaccgc gagaagttgg
      421 cgaagtggca cccggcgccg aagccgctgg gctctcgcca agagcggcgg gactggctgc
      481 gcctaggaat tgtggcgact cccgatactc agagcttggc ctgtgacttc ccaggaccct
      541 cccgatctcc ggaggcccac agaaaaccgg gaaaggaagg aaaagaggcg gcggcagctc
      601 aatgagcttc tacattagga agtctgaact ggctcggtcg taggcgggaa gttaccggtg
      661 ggctgccctg tgcagccgcg atgctgcagc gcgctgcttc agcagcccgg gccccataga
      721 cacttcccgc atcgcactgc cccttcctca cgctgctggg agtcccagga cccggtgggg
      781 ccggcatgac cggcttgccg ggggcccgcc gcgcgcccgg cagtctccgg agacgcgcgc
      841 cgagcctggc tcccacggcc tctgaggctc ggtggggctg cggtagcccg gctggcgggc
      901 tccggagccc tcccgcgcgg cgttagcccg cagctcggcc taaacgcgaa ttaaggctcc
      961 tccggagaat ccaaggccac cgaggagtcg ttacgacctg taacttgagg gccacggaac
     1021 tgctactctc gtttgctttt ggcgatcatc tttaaccccc ggagcacctc agcatccagc
     1081 caccgcggcg ctctccctgc cgcggaggac tcaggactac cccttcggcg agacggatgg
     1141 agaccgagcc ccttcgagga cctgcccctg cggtactggc tcgcgcggct caagtcacca
     1201 ccgtgaacaa gggaccctaa agaatggccg agccttgggg gaacgagttg gcgtccgcag
     1261 ctgccagggg ggacctagag caacttacta gtttgttgca aaataatgta aacgtcaatg
     1321 cacaaaatgg atttggaagg actgcgctgc aggttatgaa acttggaaat cccgagattg
     1381 ccaggagact actacttaga ggtgctaatc ccgatttgaa agaccgaact ggtttcgctg
     1441 tcattcacga tgcagccaga gcaggtttcc tggacacttt acagactttg ctggagtttc
     1501 aagctgatgt taacatcgag gataatgaag ggaacctgcc cttgcacttg gctgccaaag
     1561 aaggccacct ccccgtggtg gagttccttg tgaagcacac ggcctgcaaa gtggggcatc
     1621 ggaaccatca gggggacacc gcctgcgact tggccaggct ctaccggaga aacgaggtcg
     1681 ttagcctgat ggagggaaac cgggcggagg gagctgcgaa tctgcaatga atgtggggag
     1741 ggctctccca cactgccttc tattttgtca gttaattgat tggctgtcct attttaatat
     1801 catttgttaa aattcagttc tgtcatattt taagcagcta gttaaatctt ctgaaactgc
     1861 taagtggaaa tcttactaca ggtttatgaa tatatttaag caacatcttt ttcacctgca
     1921 aaaccctgag ttctaacatg taattgcaaa tagctttggc tttcatccga atattttatc
     1981 tttccctgac ttttctcctt gcttctccct ttgccagtct caatacccaa cttgaagact
     2041 ttgttttaaa aatggtttgt cctgatgctt cttttgcctg attaaaacac tttttcaaaa
     2101 caggacagtg ttttctgtgg tttccactcc tcttataatc cccacataat ttgcctcttg
     2161 ctaaggagaa ctacactaaa agatcatggt gttttaagtc ttgacgttag aaaaagtaga
     2221 ctaattgaaa aactagacat attctattga tgattcagtt attcttttct ttctctcctc
     2281 atgcttcccc tcaaagattt tacttggtgc ctagtatgtc tgctttaaaa cagaataagg
     2341 acaacatgtt tgggaaataa acctgaaatt atttcagtgt gaatttatcc ttatatattc
     2401 gatcttccct ttctttcaaa gttaaatagt tgaaaaacag gtttcagaag tagcgatctg
     2461 aaagcaaata tatgttagct ctaaaaggca ctttaaaaag aaaatgccat ctaaaagtg
//
LOCUS       XR_004347016            1041 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A14
            (S100A14), transcript variant X1, misc_RNA.
ACCESSION   XR_004347016
VERSION     XR_004347016.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1041
                     /gene="S100A14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744333"
     misc_RNA        1..1041
                     /gene="S100A14"
                     /product="S100 calcium binding protein A14, transcript
                     variant X1"
                     /db_xref="GeneID:116744333"
ORIGIN      
        1 aggcccagcc ccctgcctcc cctcccttcc cccaggtata agagctgagc tcaggtgcac
       61 tggctcttcc agtcctgtct cagcggttgc cagcagatca tgagacatca gctcctctgg
      121 ggccggctgt aggacgacaa cactctcacc aaaggaccaa gcaccatggg acagtgtggg
      181 tcagccaacg tgcaggatgc ccaggaattc agtgacgtgg agagggccat cgagaccctg
      241 atcaagaact tccaccagta ttcggtggag ggtgggaagg agacgctgac cccctccgag
      301 ctacgggacc tggtcaccca gcagctgccc cacctcatgc cgaacaactg tgggctggaa
      361 gagaaaattg ccaacttggg cagctgtaaa gactctaaac tggagttcgg gactttctgg
      421 gagctgattg gagaagcagc caagagtgtg aagctggaga gccctgtccg ggggagttga
      481 aaaccttccc ctggaattcg gcggcggggg gatattgggg aaagggggcc tccagagcct
      541 ggggggcctg gaaataaaac tcctctctcc accacccccg cactattccc cagccccacc
      601 tgtctcacct ctgcaacgtt caggttcatc atggcccttc ctggggcctc tgtgtacttc
      661 atccctggga gctccgtggg gctaatgggt ccaggggtcc ccacctgggg gaggctcagg
      721 gggtggctgg ggccagggat gtattggagg gctgctggag ggttgaggat gctgtaaggg
      781 ccaagtcatt tagtagtggt ggaagggcag agaggagctg agctatggga actgatttga
      841 agggggtgga aggaggaatg gatattcggt actaaaaagg gtctctacga acctacccct
      901 cctaatctct tccccaaccc caaccgcctg tccagtgctg tccctccctg cccccagctc
      961 tgccccagcc tcctctcagg accctgtctc cctggcttag ggcaggggaa gagagagagc
     1021 agggtggggt agaggctgag g
//
LOCUS       XM_032613935            1114 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A14
            (S100A14), transcript variant X2, mRNA.
ACCESSION   XM_032613935
VERSION     XM_032613935.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1114
                     /gene="S100A14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744333"
     CDS             166..480
                     /gene="S100A14"
                     /codon_start=1
                     /product="protein S100-A14"
                     /protein_id="XP_032469826.1"
                     /db_xref="GeneID:116744333"
                     /translation="MGQCGSANVQDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPS
                     ELRDLVTQQLPHLMPNNCGLEEKIANLGSCKDSKLEFGTFWELIGEAAKSVKLESPVR
                     GS"
     misc_feature    211..477
                     /gene="S100A14"
                     /note="S-100A13 domain found in proteins similar to
                     S100A13. S100A13 is a calcium-binding protein belonging to
                     a large S100 vertebrate-specific protein family within the
                     EF-hand superfamily of calcium-binding proteins. Note that
                     the S-100 hierarchy, to which...; Region: S-100A13;
                     cd05022"
                     /db_xref="CDD:240149"
     misc_feature    order(211..222,226..231,235..240,247..249,310..312,
                     322..324,331..333,406..408,418..420,427..429,436..444,
                     448..453)
                     /gene="S100A14"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240149"
     misc_feature    order(262..264,274..276,283..285,298..300,379..381,
                     385..387,391..393,397..399,412..414)
                     /gene="S100A14"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240149"
     misc_feature    451..477
                     /gene="S100A14"
                     /note="putative FGF-1 binding site [active]"
                     /db_xref="CDD:240149"
ORIGIN      
        1 aggcccagcc ccctgcctcc cctcccttcc cccaggtata agagctgagc tcaggtgcac
       61 tggctcttcc agtcctgtct cagcggttgc cagcagatca tgagacatca gctcctctgg
      121 ggccggctgt aggacgacaa cactctcacc aaaggaccaa gcaccatggg acagtgtggg
      181 tcagccaacg tgcaggatgc ccaggaattc agtgacgtgg agagggccat cgagaccctg
      241 atcaagaact tccaccagta ttcggtggag ggtgggaagg agacgctgac cccctccgag
      301 ctacgggacc tggtcaccca gcagctgccc cacctcatgc cgaacaactg tgggctggaa
      361 gagaaaattg ccaacttggg cagctgtaaa gactctaaac tggagttcgg gactttctgg
      421 gagctgattg gagaagcagc caagagtgtg aagctggaga gccctgtccg ggggagttga
      481 aaaccttccc ctggaattcg gcggcggggg gatattgggg aaagggggcc tccagagcct
      541 ggggggcctg gaaataaaac tcctctctcc accacccccg cactattccc cagccccacc
      601 tgtctcacct ctgcaacgtt caggttcatc atggcccttc ctggggcctc tgtgtacttc
      661 atccctggga gctccgtggg gctaatgggt ccaggggtcc ccacctgggg gaggctcagg
      721 gggtggctgg ggccagggat gtattggagg gctgctggag ggttgaggat gctgtaaggg
      781 ccaagtcatt tagtagtggt ggaagggcag agaggagctg agctatggga actgatttga
      841 agggggtgga aggaggaatg gatattcggt actaaaaagg gtctctacga acctacccct
      901 cctaatctct tccccaaccc caaccgcctg tccagtgctg tccctccctg cccccagctc
      961 tgccccagcc tcctctcagg accctgtctc cctggcttag ggcaggggaa gagagagagc
     1021 agggtgagtt ttggaagtga gaggaccagc tgggtgcttg ggcatttaca gaatgatagt
     1081 tgttttgtat catttgatta ataaagaaga tgga
//
LOCUS       XM_032613946            1064 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A16
            (S100A16), transcript variant X1, mRNA.
ACCESSION   XM_032613946
VERSION     XM_032613946.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1064
                     /gene="S100A16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744344"
     CDS             180..491
                     /gene="S100A16"
                     /codon_start=1
                     /product="protein S100-A16"
                     /protein_id="XP_032469837.1"
                     /db_xref="GeneID:116744344"
                     /translation="MADSYTELEKAVVVLVENFYKYVSKHSLAKDKISKSSFRKMLQK
                     ELNHMLTDTGNRRAADKLIQNLDANHDGRISFDEYWILIGGITSPIANLIRQQEQQSS
                     S"
     misc_feature    195..476
                     /gene="S100A16"
                     /note="S-100A13 domain found in proteins similar to
                     S100A13. S100A13 is a calcium-binding protein belonging to
                     a large S100 vertebrate-specific protein family within the
                     EF-hand superfamily of calcium-binding proteins. Note that
                     the S-100 hierarchy, to which...; Region: S-100A13;
                     cd05022"
                     /db_xref="CDD:240149"
     misc_feature    order(195..206,210..215,219..224,231..233,300..302,
                     312..314,321..323,405..407,417..419,426..428,435..443,
                     447..452)
                     /gene="S100A16"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240149"
     misc_feature    order(246..248,264..266,273..275,288..290,378..380,
                     384..386,390..392,396..398,411..413)
                     /gene="S100A16"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240149"
     misc_feature    450..476
                     /gene="S100A16"
                     /note="putative FGF-1 binding site [active]"
                     /db_xref="CDD:240149"
ORIGIN      
        1 cactgagcca gctgcgccag gcagggctgg gagggagtgg gacagattct gggagtgcag
       61 cggggaggag tcctggctgg ctgagctcgt agctacttgg cagtgccaga gcccaggtct
      121 cagagccctg caggagagga ggtggaccaa gaaggccctg cgaggtgtga ggctgtgaga
      181 tggcggactc ctacacagag ctggagaagg cggtggtcgt cctggtggaa aacttctaca
      241 aatacgtgtc caagcacagc ctggccaagg acaagatcag caaaagcagc ttccggaaga
      301 tgcttcagaa ggagctcaac catatgctga cggacaccgg gaaccgaagg gctgctgata
      361 agctcatcca gaacctggac gccaaccacg atgggcgcat cagcttcgac gagtactgga
      421 tcttgatagg cggcatcact agtcccatcg ccaaccttat ccgccagcag gagcagcaga
      481 gcagcagcta gaggaccctc ccaccgtccc ctcccccatg ctcttcctag gctccctcct
      541 ctgcccaccc agacccctgt cctctcttct ccctctagac cttctcctga caattgctga
      601 acggggcaag gggggatgtc agggcctctt tgtgagtgtc tctgtctggg ggtgtctccc
      661 tgagggtctc agtccctgga gccagcagac cctggggccc ctctgtgaca gtgctgtatg
      721 gggacccaag agtttcccca cctgttatct acccttctga cctctgatgt tcctgcctga
      781 ttccgggtct ctcctgacct tagaggtcag cttgctgctt caggtctccc tgttcctggt
      841 aacaccagca gagactcctc tctccccttt ccctcagccc ctctgctggg tagaggagac
      901 ttccagggat tgccctccag ctgcctctgg gtctggaaac agggttgagc cccctccctc
      961 ctgagccact gaaatgggca acaaaggctg gatttggagt ttgtgtcccc ctcaccaagt
     1021 ccctttgtga tgttcattaa aacctttcca ctccttggaa cttc
//
LOCUS       XM_032613951            1019 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A16
            (S100A16), transcript variant X2, mRNA.
ACCESSION   XM_032613951
VERSION     XM_032613951.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1019
                     /gene="S100A16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744344"
     CDS             135..446
                     /gene="S100A16"
                     /codon_start=1
                     /product="protein S100-A16"
                     /protein_id="XP_032469842.1"
                     /db_xref="GeneID:116744344"
                     /translation="MADSYTELEKAVVVLVENFYKYVSKHSLAKDKISKSSFRKMLQK
                     ELNHMLTDTGNRRAADKLIQNLDANHDGRISFDEYWILIGGITSPIANLIRQQEQQSS
                     S"
     misc_feature    150..431
                     /gene="S100A16"
                     /note="S-100A13 domain found in proteins similar to
                     S100A13. S100A13 is a calcium-binding protein belonging to
                     a large S100 vertebrate-specific protein family within the
                     EF-hand superfamily of calcium-binding proteins. Note that
                     the S-100 hierarchy, to which...; Region: S-100A13;
                     cd05022"
                     /db_xref="CDD:240149"
     misc_feature    order(150..161,165..170,174..179,186..188,255..257,
                     267..269,276..278,360..362,372..374,381..383,390..398,
                     402..407)
                     /gene="S100A16"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240149"
     misc_feature    order(201..203,219..221,228..230,243..245,333..335,
                     339..341,345..347,351..353,366..368)
                     /gene="S100A16"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240149"
     misc_feature    405..431
                     /gene="S100A16"
                     /note="putative FGF-1 binding site [active]"
                     /db_xref="CDD:240149"
ORIGIN      
        1 tgccttttgt cctggagcag ggggctgttg tgtgtagcct ctggctggct gtggaggctc
       61 catcttcagc tgtctccagc tggggctgaa cctctgggct cctccttagg ccctgcgagg
      121 tgtgaggctg tgagatggcg gactcctaca cagagctgga gaaggcggtg gtcgtcctgg
      181 tggaaaactt ctacaaatac gtgtccaagc acagcctggc caaggacaag atcagcaaaa
      241 gcagcttccg gaagatgctt cagaaggagc tcaaccatat gctgacggac accgggaacc
      301 gaagggctgc tgataagctc atccagaacc tggacgccaa ccacgatggg cgcatcagct
      361 tcgacgagta ctggatcttg ataggcggca tcactagtcc catcgccaac cttatccgcc
      421 agcaggagca gcagagcagc agctagagga ccctcccacc gtcccctccc ccatgctctt
      481 cctaggctcc ctcctctgcc cacccagacc cctgtcctct cttctccctc tagaccttct
      541 cctgacaatt gctgaacggg gcaagggggg atgtcagggc ctctttgtga gtgtctctgt
      601 ctgggggtgt ctccctgagg gtctcagtcc ctggagccag cagaccctgg ggcccctctg
      661 tgacagtgct gtatggggac ccaagagttt ccccacctgt tatctaccct tctgacctct
      721 gatgttcctg cctgattccg ggtctctcct gaccttagag gtcagcttgc tgcttcaggt
      781 ctccctgttc ctggtaacac cagcagagac tcctctctcc cctttccctc agcccctctg
      841 ctgggtagag gagacttcca gggattgccc tccagctgcc tctgggtctg gaaacagggt
      901 tgagccccct ccctcctgag ccactgaaat gggcaacaaa ggctggattt ggagtttgtg
      961 tccccctcac caagtccctt tgtgatgttc attaaaacct ttccactcct tggaacttc
//
LOCUS       XM_032613956            1069 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus S100 calcium binding protein A16
            (S100A16), transcript variant X3, mRNA.
ACCESSION   XM_032613956
VERSION     XM_032613956.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1069
                     /gene="S100A16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744344"
     CDS             185..496
                     /gene="S100A16"
                     /codon_start=1
                     /product="protein S100-A16"
                     /protein_id="XP_032469847.1"
                     /db_xref="GeneID:116744344"
                     /translation="MADSYTELEKAVVVLVENFYKYVSKHSLAKDKISKSSFRKMLQK
                     ELNHMLTDTGNRRAADKLIQNLDANHDGRISFDEYWILIGGITSPIANLIRQQEQQSS
                     S"
     misc_feature    200..481
                     /gene="S100A16"
                     /note="S-100A13 domain found in proteins similar to
                     S100A13. S100A13 is a calcium-binding protein belonging to
                     a large S100 vertebrate-specific protein family within the
                     EF-hand superfamily of calcium-binding proteins. Note that
                     the S-100 hierarchy, to which...; Region: S-100A13;
                     cd05022"
                     /db_xref="CDD:240149"
     misc_feature    order(200..211,215..220,224..229,236..238,305..307,
                     317..319,326..328,410..412,422..424,431..433,440..448,
                     452..457)
                     /gene="S100A16"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240149"
     misc_feature    order(251..253,269..271,278..280,293..295,383..385,
                     389..391,395..397,401..403,416..418)
                     /gene="S100A16"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:240149"
     misc_feature    455..481
                     /gene="S100A16"
                     /note="putative FGF-1 binding site [active]"
                     /db_xref="CDD:240149"
ORIGIN      
        1 ccactgagcc agctgcgcca ggcagggctg ggagggagtg ggacagattc tgggagtgca
       61 gcggggagga gtcctggctg gctgagctcg tagctacttg gcagtgccag agcccaggtc
      121 tcagagccct gcaggagagg aggtggacca agaaggtagg ccctgcgagg tgtgaggctg
      181 tgagatggcg gactcctaca cagagctgga gaaggcggtg gtcgtcctgg tggaaaactt
      241 ctacaaatac gtgtccaagc acagcctggc caaggacaag atcagcaaaa gcagcttccg
      301 gaagatgctt cagaaggagc tcaaccatat gctgacggac accgggaacc gaagggctgc
      361 tgataagctc atccagaacc tggacgccaa ccacgatggg cgcatcagct tcgacgagta
      421 ctggatcttg ataggcggca tcactagtcc catcgccaac cttatccgcc agcaggagca
      481 gcagagcagc agctagagga ccctcccacc gtcccctccc ccatgctctt cctaggctcc
      541 ctcctctgcc cacccagacc cctgtcctct cttctccctc tagaccttct cctgacaatt
      601 gctgaacggg gcaagggggg atgtcagggc ctctttgtga gtgtctctgt ctgggggtgt
      661 ctccctgagg gtctcagtcc ctggagccag cagaccctgg ggcccctctg tgacagtgct
      721 gtatggggac ccaagagttt ccccacctgt tatctaccct tctgacctct gatgttcctg
      781 cctgattccg ggtctctcct gaccttagag gtcagcttgc tgcttcaggt ctccctgttc
      841 ctggtaacac cagcagagac tcctctctcc cctttccctc agcccctctg ctgggtagag
      901 gagacttcca gggattgccc tccagctgcc tctgggtctg gaaacagggt tgagccccct
      961 ccctcctgag ccactgaaat gggcaacaaa ggctggattt ggagtttgtg tccccctcac
     1021 caagtccctt tgtgatgttc attaaaacct ttccactcct tggaacttc
//
LOCUS       XR_004347022             711 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744360
            (LOC116744360), ncRNA.
ACCESSION   XR_004347022
VERSION     XR_004347022.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..711
                     /gene="LOC116744360"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116744360"
     ncRNA           1..711
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744360"
                     /product="uncharacterized LOC116744360"
                     /db_xref="GeneID:116744360"
ORIGIN      
        1 atctccaaaa taaactactt tgcttgaata cttgtctcag attcaggaga acccaaacta
       61 tgacactccc aaatgagtaa accgtctccc agggctccac cctcgatgac ttcagccctt
      121 ggaatcttcc ttgactccat tctttggctg gaccacccag gcaggtacca cgtccactct
      181 tccttccttc cctcaccact catattggca caccagcttc ctaactggcc tccctgccct
      241 ggactcctcg acctggttct tcctgcatcg ggggagagag cagaaccttc atgacttagc
      301 cagcggactg ttcgaaggtg ctgggttcca caaagctctc tggagacgtg cagcatgacc
      361 aacagccgac cgaccaacca ctaagctgtt ctcgcaaagc tgtggccggc ttggaagtca
      421 gcggcatctc tgtggagaag cccacgcact aaggaactga catctccagc caacagtcag
      481 cgtggacccg aagacctgcc gacagacaca cgagtgagct tgaaagcaga tccccagcca
      541 agtcttgaga tgaccgcagc cccggccaac atcttaattg tagcctgtgt gagctctgaa
      601 caaggggccc ccagctaaag cagaaccaga ttcctggtcc acaggagcta ttagataata
      661 gatgtatagt tgctaaggtt tggggtaatt tgtcacgcag cagttgttga c
//
LOCUS       XM_032613975            5382 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus claspin (CLSPN), transcript variant X1,
            mRNA.
ACCESSION   XM_032613975
VERSION     XM_032613975.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5382
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5382
                     /gene="CLSPN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116744364"
     CDS             107..4117
                     /gene="CLSPN"
                     /codon_start=1
                     /product="claspin isoform X1"
                     /protein_id="XP_032469866.1"
                     /db_xref="GeneID:116744364"
                     /translation="MTGEVVSEVHLEINDSKLISQEEADSPSDSGQGSCEIVGLLSEQ
                     DSDEEIFVSKKLKSRKVLQESDSEQEGTNASPENTTYDDIEEEDKENLHAGKNGKVRR
                     IYRTLVNSDESDIEESLCQENLETQVTPCLELSLQPENSADFTVDRKISKKPIHDKEG
                     IGGKAKVKSKRRLKKEERKMEKIKQLKKKETKNEEDDVKQLFNDSGCLLVDKDLFETG
                     LEEENNSPLEDEESLESIREAVKNKVKKHKRKEPSLESEVYSFEEETELSKGTTRKER
                     KAAKLSKEALKKLHSETQRLIREAALNLPYHMPENKTVHEFFKRKPRPTCQGNAMALL
                     KSSKYQASHHKEITDTENTTEINSDHHSKDSEQTTGAGYEMEINALPAVSKEPQITTG
                     SDESCSKKLTGSEELDIPEKQEQSDARPSPGDISVARQECSFLGNKDSEEHQAGGLVA
                     PEPCALEEEEGLKKTEEADEKVEEPSQQTKSAAVVPPEKVRRFTVDRLKQLGVDVFIQ
                     PRLGADKDSFVILEEPETNRELEALKQRFWKHANPAAKPRAAQQVNVNIIVKDVGPDG
                     KEELKADTVPVTLAAEKLDGASHTKPGEKLQVLKAKLQEAMKLRRSEERQKRQALLKL
                     DNEDGFEEEEEEEEDMTDQSEEDGEEEGEEALEEEEAKEEEEEEEGNQEIAEFLLGSE
                     EIETKDEKEMDKENNDGNGEIGKSVGLLSVPKPLLSDSTFLLFKDNSSKIGYSASEEK
                     SEIDENSGKRPSKLDEDDSCSLLTKESSHNSSFELIGSTIPSYQPCNRQTGRGTSLFP
                     TAGGFRSPSPGLFRASLVSSASKSSGKLSEPSLPIEDSQDLYNASPEPKTLFLGAGDF
                     QFCLEDDTQSQLLDADGFLNVRNHRNQYQALKPRLPLASMDENAMDANMDELLDLCTG
                     KFTSQAEKPLSRKSDKKENMEELLDLCSGKFTSQDVSTLAPSESNKQEKENSLGDPME
                     EALTLCSGSFPTDREEEGEEEEFGDFQLVPNDNEFDSNEDEHSDSDNEDPALEDQEDN
                     DEEDLLQQSEKLKRQMRLKKYLEDEAEVSGSDVGSEDEYDGEELDEYEEDVIDELLPS
                     DEELQSQIKKIHMKTMLDDDKRQLRLYQERYLADGDLHSDGPGRMRKFRWKNIDDASQ
                     MDLFHRDSDDDQTEEQLDETEARWRKERIEREQWLRDQAQQGKIAAEEEEIGEDSQFM
                     MLAKKVTAKALQKNVCRTVVIQESESLFRNPFEATKPGSDNQLKTGSLLNQPKAVLQK
                     LAALSDLNPSAPRNSRNFVFHTLSPVKAEAAKESSKPRVRRRGPSLMTSPSPKRLKTD
                     DSASGSKQSIFRYLES"
ORIGIN      
        1 gctcgaacgc cgctgcctgg caggagagtg cgggagcagc tgcgtcccgg gtgcgggaag
       61 cggagacctg cttcttcctg agcggcgcgc tgcggaggcc ggagtcatga cgggagaagt
      121 ggtttccgag gttcacctag aaatcaatga ttcaaaactc atttcacaag aagaagcaga
      181 tagtccttca gacagtggac agggcagctg tgaaatagtt gggctcttga gtgaacaaga
      241 ttcagatgaa gagatatttg tgagtaagaa attgaaaagc aggaaggtgc tacaagagag
      301 tgattctgaa caagagggca caaatgcctc tccagagaat actacctatg acgatataga
      361 ggaggaagat aaggagaact tacatgctgg aaaaaatgga aaagtcagaa ggatttacag
      421 aactctggtg aacagtgatg agagtgacat cgaggagtct ttgtgtcagg aaaatcttga
      481 aacccaagtg acaccttgct tagagctgag tctccaacct gaaaactctg cggattttac
      541 agttgacaga aagatttcca aaaaacccat acatgataaa gaaggaattg gaggaaaagc
      601 aaaagtaaaa tcaaagcgaa gactcaagaa agaggagaga aagatggaga aaattaagca
      661 gctgaaaaag aaggaaacaa aaaatgagga agatgatgtg aaacagctat ttaatgacag
      721 tggctgtcta cttgtggata aagacctttt tgaaactggg ttggaggagg aaaataactc
      781 tccattagaa gatgaagagt cattagaatc aataagggaa gctgtgaaaa acaaagtaaa
      841 aaagcacaag agaaaggaac catctttgga gagtgaggtc tattcatttg aagaagaaac
      901 tgagttatca aaaggcacca cgaggaagga aagaaaggca gccaagttaa gtaaggaagc
      961 attaaaaaaa ttgcatagtg agactcagcg ccttattcga gaggctgcac ttaatcttcc
     1021 atatcatatg cctgagaata aaactgttca tgaattcttc aaacgtaaac cccggcccac
     1081 ttgccaggga aatgccatgg cactactgaa gtcatctaag tatcaggcaa gccatcacaa
     1141 agaaatcaca gacactgaaa atacaactga gataaatagt gaccaccata gcaaagattc
     1201 tgagcagaca acaggtgcag gatatgaaat ggaaattaat gcactccctg cagtttcaaa
     1261 ggaaccccag atcactactg gatcagatga gtcttgcagt aagaagttga caggaagtga
     1321 agagctagac attcccgaga aacaggagca gagtgatgct agaccttcac ctggggacat
     1381 ctcggtggca cgacaggaat gcagcttcct tgggaataag gacagtgagg agcatcaggc
     1441 tggagggctt gtggcacctg aaccttgtgc cctggaggaa gaagaaggcc tgaaaaaaac
     1501 agaagaagca gatgagaagg tggaagagcc cagccagcaa actaaatcag cagcagtggt
     1561 gccacctgaa aaagtgagga ggttcactgt ggatagactg aagcaactgg gagtagatgt
     1621 tttcattcag cctcggctgg gtgctgacaa agattctttt gtgatacttg aagaacctga
     1681 aaccaacaga gaactggaag ctttgaagca gcgtttctgg aagcatgcta atccagcagc
     1741 caaacccagg gctgctcagc aggtgaatgt gaacatcata gtgaaagatg tgggccctga
     1801 tggaaaggaa gagctcaagg cagatacggt acctgtgact ttggcagctg agaagctgga
     1861 tggagcaagc cacacaaaac caggggaaaa gcttcaggtg ctgaaagcta agctgcaaga
     1921 agcaatgaaa ctccgaaggt ctgaggagcg ccaaaagcgc caagcattac ttaagttaga
     1981 taatgaagat ggatttgaag aagaggagga ggaggaggaa gacatgacgg atcagtccga
     2041 ggaagacgga gaagaggagg gagaggaagc tttggaggaa gaagaggcga aagaggagga
     2101 agaggaggaa gaaggcaatc aggagattgc agaattcctt ctcggtagtg aagaaataga
     2161 aaccaaagat gagaaagaaa tggataaaga aaacaatgat ggcaatggtg aaattggcaa
     2221 gtcagttggc cttctctctg tccccaagcc tctcttgtca gattctacct tccttctatt
     2281 taaggacaac tcttccaaga taggttactc tgctagtgaa gaaaaatcag aaatagatga
     2341 aaactcaggc aaaagaccta gcaaactaga tgaagatgat tcgtgctcat tactgacaaa
     2401 ggagagcagc cacaatagca gctttgagct gataggctcc acaattccat cctatcagcc
     2461 ttgcaacaga caaacaggcc gtgggaccag tctttttcct acggcaggag gattcagatc
     2521 tccttcccct ggactatttc gagccagttt ggtcagctca gcttctaaga gttcaggaaa
     2581 gctgtctgag ccttcacttc ccatagagga ttcccaggat ctgtataacg cctccccaga
     2641 gcctaagaca cttttcctag gagcaggaga cttccagttc tgtttagaag atgacactca
     2701 gagccaactg ttggatgcag atgggttctt aaatgttaga aaccacagga atcagtacca
     2761 agctttgaag cctcgattgc cgttggccag tatggatgag aacgccatgg acgccaacat
     2821 ggatgagctg ttggatttgt gtacgggaaa gttcacatct caggctgaaa aacctctgtc
     2881 caggaagagc gacaagaagg agaacatgga ggaacttctg gatctgtgtt caggaaaatt
     2941 tacttctcag gatgtctcta ctctggctcc atcagagtca aataagcagg agaaggagaa
     3001 cagtctgggt gatccaatgg aagaagcact tactctttgc tcaggctctt tcccaacaga
     3061 cagggaagaa gagggtgaag aggaggaatt tggagacttt cagcttgtcc caaatgataa
     3121 tgagtttgat agtaatgagg atgaacacag tgactctgac aatgaagacc cggcactaga
     3181 agaccaggaa gataatgatg aggaagacct cctgcagcaa tccgagaagt tgaaaaggca
     3241 aatgagattg aagaaatacc tggaggatga ggcagaggtg tcagggagtg acgtgggaag
     3301 tgaagatgag tatgatgggg aagagcttga tgaatatgaa gaggatgtaa ttgatgaatt
     3361 acttccttct gatgaggaac tgcagagtca aatcaagaaa atacacatga aaacaatgtt
     3421 ggatgatgat aaacgacagt tacgtttgta ccaagaaagg taccttgctg atggggacct
     3481 gcacagtgat ggtcctggac gaatgaggaa attccgatgg aagaacatag atgatgcttc
     3541 ccagatggac ttgttccaca gagactctga tgacgatcag actgaagaac agcttgatga
     3601 gacagaagcc agatggagga aggagcgaat tgaacgagaa cagtggcttc gggaccaggc
     3661 acagcagggg aaaattgcag ctgaagaaga agagattggg gaagatagtc agtttatgat
     3721 gctggccaag aaagttacag ccaaagctct gcagaagaat gtctgtcgca ctgtggttat
     3781 tcaagaatca gagtctttat tcagaaatcc ttttgaagcc accaaaccag gaagtgacaa
     3841 ccagctgaag acgggctcac tgctaaacca gcccaaagct gtgcttcaga aactggctgc
     3901 cctgtctgac ctcaacccta gtgctccccg aaattcaaga aactttgtct tccacacact
     3961 ttctcctgtc aaggctgagg cagcaaagga atcatctaag cctcgggtaa ggagaagagg
     4021 tccgtcttta atgacatccc cttcacctaa gcgcctcaaa acagatgata gcgcttcagg
     4081 atcgaagcaa agcatcttca gatacttgga aagctaacac cacaagggca ctggcacctg
     4141 tgttgagact tcgttgagaa gtttctggca ttgaaggttg gaatcgatgc tcatatggat
     4201 tatcccccct tccttcataa tcagtgcatt aaggttgagg acagagattc cagttctttc
     4261 cactgcatgg ctctggacat ctctttccta gcattacttc ctgggttggc cactaactta
     4321 attcttcagt gtttacaaca tcaacttatg ggatacctgg gtgtcctcca ttaaatattt
     4381 gacattttat cctagcagct tcctgggttg ataacttttg gtgaaagggg tgattggagg
     4441 aagaaaaagt atggcatgac agaaaattac agacagcagt gaacatcaaa actgggatga
     4501 ctccttcaca cccctatgat ctgcaccatg gtgaccagga ctcagtgaaa gagagacttc
     4561 ttagaggatc tagcaatcga cacacgggct gttttattag ttttgcccct tccattttct
     4621 tttatgtctc ttcccagtgc agtctcaaat ttccaattaa cctgtacttc ctttataata
     4681 aggactcaaa ctggtaccct agtcagaaag agcaactttt ctggagtatg aggatgaaga
     4741 taaaaggtta catccagtgt ccgtagacat tagatattcc gtggggcaga gagctctctc
     4801 ttaggactaa attttcgatt tgaagcactg ttgctcaagg accttccttc tcattctgac
     4861 tggaagagtt atatataatc attatttatt gcattaaact gggttgagta cattgccctg
     4921 agcagaggac aatttaatac ttcattactt attttgagaa aagatcatct tggagtttca
     4981 tcaaaatatt tttaggattg ccaccactcc cgattttccc tgaactacca tgaggctgtc
     5041 agagttttag acagattttt tttttcctct cagaaccaag tgtcactgct gctttggaaa
     5101 aacatttcat gtaaatactg tggttttact ttcaggagct ggacttggga agctggatga
     5161 actgtgccag tttttcactg gcagataagg aataccaatt taactggtgg aattaggata
     5221 taggttttct acagttgttt gtaatatgca agatgctgac tttgatggaa tttacatttg
     5281 tatatttgta atcttgtaat agtgaaaatg tatataaaga tgttttaata tgtatgtagt
     5341 ttttcaataa atcccaatgc cttgaaggca ggatttgctg tc
//
LOCUS       XR_004347028            4410 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus claspin (CLSPN), transcript variant X2,
            misc_RNA.
ACCESSION   XR_004347028
VERSION     XR_004347028.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4410
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4410
                     /gene="CLSPN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116744364"
     misc_RNA        1..4410
                     /gene="CLSPN"
                     /product="claspin, transcript variant X2"
                     /db_xref="GeneID:116744364"
ORIGIN      
        1 gctcgaacgc cgctgcctgg caggagagtg cgggagcagc tgcgtcccgg gtgcgggaag
       61 cggagacctg cttcttcctg agcggcgcgc tgcggaggcc ggagtcatga cgggagaagt
      121 ggtttccgag gttcacctag aaatcaatga ttcaaaactc atttcacaag aagaagcaga
      181 tagtccttca gacagtggac agggcagctg tgaaatagtt gggctcttga gtgaacaaga
      241 ttcagatgaa gagatatttg tgagtaagaa attgaaaagc aggaaggtgc tacaagagag
      301 tgattctgaa caagagggca caaatgcctc tccagagaat actacctatg acgatataga
      361 ggaggaagat aaggagaact tacatgctgg aaaaaatgga aaagtcagaa ggatttacag
      421 aactctggtg aacagtgatg agagtgacat cgaggagtct ttgtgtcagg aaaatcttga
      481 aacccaagtg acaccttgct tagagctgag tctccaacct gaaaactctg cggattttac
      541 agttgacaga aagatttcca aaaaacccat acatgataaa gaaggaattg gaggaaaagc
      601 aaaagtaaaa tcaaagcgaa gactcaagaa agaggagaga aagatggaga aaattaagca
      661 gctgaaaaag aaggaaacaa aaaatgagga agatgatgtg aaacagctat ttaatgacag
      721 tggctgtcta cttgtggata aagacctttt tgaaactggg ttggaggagg aaaataactc
      781 tccattagaa gatgaagagt cattagaatc aataagggaa gctgtgaaaa acaaagtaaa
      841 aaagcacaag agaaaggaac catctttgga gagtgaggtc tattcatttg aagaagaaac
      901 tgagttatca aaaggcacca cgaggaagga aagaaaggca gccaagttaa gtaaggaagc
      961 attaaaaaaa ttgcatagtg agactcagcg ccttattcga gaggctgcac ttaatcttcc
     1021 atatcatatg cctgagaata aaactgttca tgaattcttc aaacgtaaac cccggcccac
     1081 ttgccaggga aatgccatgg cactactgaa gtcatctaag tatcaggcaa gccatcacaa
     1141 agaaatcaca gacactgaaa atacaactga gataaatagt gaccaccata gcaaagattc
     1201 tgagcagaca acaggtgcag gatatgaaat ggaaattaat gcactccctg cagtttcaaa
     1261 ggaaccccag atcactactg gatcagatga gtcttgcagt aagaagttga caggaagtga
     1321 agagctagac attcccgaga aacaggagca gagtgatgct agaccttcac ctggggacat
     1381 ctcggtggca cgacaggaat gcagcttcct tgggaataag gacagtgagg agcatcaggc
     1441 tggagggctt gtggcacctg aaccttgtgc cctggaggaa gaagaaggcc tgaaaaaaac
     1501 agaagaagca gatgagaagg tggaagagcc cagccagcaa actaaatcag cagcagtggt
     1561 gccacctgaa aaagtgagga ggttcactgt ggatagactg aagcaactgg gagtagatgt
     1621 tttcattcag cctcggctgg gtgctgacaa agattctttt gtgatacttg aagaacctga
     1681 aaccaacaga gaactggaag ctttgaagca gcgtttctgg aagcatgcta atccagcagc
     1741 caaacccagg gctgctcagc aggtgaatgt gaacatcata gtgaaagatg tgggccctga
     1801 tggaaaggaa gagctcaagg cagatacggt acctgtgact ttggcagctg agaagctgga
     1861 tggagcaagc cacacaaaac caggggaaaa gcttcaggtg ctgaaagcta agctgcaaga
     1921 agcaatgaaa ctccgaaggt ctgaggagcg ccaaaagcgc caagcattac ttaagttaga
     1981 taatgaagat ggatttgaag aagaggagga ggaggaggaa gacatgacgg atcagtccga
     2041 ggaagacgga gaagaggagg gagaggaagc tttggaggaa gaagaggcga aagaggagga
     2101 agaggaggaa gaaggcaatc aggagattgc agaattcctt ctcggtagtg aagaaataga
     2161 aaccaaagat gagaaagaaa tggataaaga aaacaatgat ggcaatggtg aaattggcaa
     2221 gtcagttggc cttctctctg tccccaagcc tctcttgtca gattctacct tccttctatt
     2281 taaggacaac tcttccaaga taggttactc tgctagtgaa gaaaaatcag aaatagatga
     2341 aaactcaggc aaaagaccta gcaaactaga tgaagatgat tcgtgctcat tactgacaaa
     2401 ggagagcagc cacaatagca gctttgagct gataggctcc acaattccat cctatcagcc
     2461 ttgcaacaga caaacaggcc gtgggaccag tctttttcct acggcaggag gattcagatc
     2521 tccttcccct ggactatttc gagccagttt ggtcagctca gcttctaaga gttcaggaaa
     2581 gctgtctgag ccttcacttc ccatagagga ttcccaggat ctgtataacg cctccccaga
     2641 gcctaagaca cttttcctag gagcaggaga cttccagttc tgtttagaag atgacactca
     2701 gagccaactg ttggatgcag atgggttctt aaatgttaga aaccacagga atcagtacca
     2761 agctttgaag cctcgattgc cgttggccag tatggatgag aacgccatgg acgccaacat
     2821 ggatgagctg ttggatttgt gtacgggaaa gttcacatct caggctgaaa aacctctgtc
     2881 caggaagagc gacaagaagg agaacatgga ggaacttctg gatctgtgtt caggaaaatt
     2941 tacttctcag gatgtctcta ctctggctcc atcagagtca aataagcagg agaaggagaa
     3001 cagtctgggt gatccaatgg aagaagcact tactctttgc tcaggctctt tcccaacaga
     3061 cagggaagaa gagggtgaag aggaggaatt tggagacttt cagcttgtcc caaatgataa
     3121 tgagtttgat agtaatgagg atgaacacag tgactctgac aatgaagacc cggcactaga
     3181 agaccaggaa gataatgatg aggaagacct cctgcagcaa tccgagaagt tgaaaaggca
     3241 aatgagattg aagaaatacc tggaggatga ggcagaggtg tcagggagtg acgtgggaag
     3301 tgaagatgag tatgatgggg aagagcttga tgaatatgaa gaggatgtaa ttgatgaatt
     3361 acttccttct gatgaggaac tgcagagtca aatcaagaaa atacacatga aaacaatgtt
     3421 ggatgatgat aaacgacagt tacgtttgta ccaagaaagg taccttgctg atggggacct
     3481 gcacagtgat ggtcctggac gaatgaggaa attccgatgg aagaacatag atgatgcttc
     3541 ccagatggac ttgttccaca gagactctga tgacgatcag actgaagaac agcttgatga
     3601 gacagaagcc agatggagga aggagcgaat tgaacgagaa cagtggcttc gggaccaggc
     3661 acagcagggg aaaattgcag ctgaagaaga agagattggg gaagatagtc agtttatgat
     3721 gctggccaag aaagttacag ccaaagctct gcagaagaat gtctgtcgca ctgtggttat
     3781 tcaagaatca gagtctttat tcagaaatcc ttttgaagcc accaaaccag gaagtgacaa
     3841 ccagctgaag acgggctcac tgctaaacca gcccaaagct gtgcttcaga aactggctgc
     3901 cctgtctgac ctcaacccta gtgctccccg aaattcaaga aactttgtct tccacacact
     3961 ttctcctgtc aaggctgagg cagcaaagga atcatctaag cctcgggtaa ggagaagagg
     4021 tccgtcttta atgacatccc cttcacctaa gcgcctcaaa acagatgata gcgcttcagg
     4081 atcgaagcaa agcatcttca gatacttgga aagctaacac cacaagggca ctggcacctg
     4141 tgttgagact tcgttgagaa gtttctggca ttgaaggagc tggacttggg aagctggatg
     4201 aactgtgcca gtttttcact ggcagataag gaataccaat ttaactggtg gaattaggat
     4261 ataggttttc tacagttgtt tgtaatatgc aagatgctga ctttgatgga atttacattt
     4321 gtatatttgt aatcttgtaa tagtgaaaat gtatataaag atgttttaat atgtatgtag
     4381 tttttcaata aatcccaatg ccttgaaggc
//
LOCUS       XM_032613987            5280 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus claspin (CLSPN), transcript variant X3,
            mRNA.
ACCESSION   XM_032613987
VERSION     XM_032613987.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5280
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5280
                     /gene="CLSPN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744364"
     CDS             100..4032
                     /gene="CLSPN"
                     /codon_start=1
                     /product="claspin isoform X2"
                     /protein_id="XP_032469878.1"
                     /db_xref="GeneID:116744364"
                     /translation="MTGEVVSEVHLEINDSKLISQEEADSPSDSGQGSCEIVGLLSEQ
                     DSDEEIFVSKKLKSRKVLQESDSEQEGTNASPENTTYDDIEEEDKENLHAGKNGKVRR
                     IYRTLVNSDESDIEESLCQENLETQVTPCLELSLQPENSADFTVDRKISKKPIHDKEG
                     IGGKAKVKSKRRLKKEERKMEKIKQLKKKETKNEEDDVKQLFNDSGCLLVDKDLFETG
                     LEEENNSPLEDEESLESIREAVKNKVKKHKERKAAKLSKEALKKLHSETQRLIREAAL
                     NLPYHMPENKTVHEFFKRKPRPTCQGNAMALLKSSKYQASHHKEITDTENTTEINSDH
                     HSKDSEQTTGAGYEMEINALPAVSKEPQITTGSDESCSKKLTGSEELDIPEKQEQSDA
                     RPSPGDISVARQECSFLGNKDSEEHQAGGLVAPEPCALEEEEGLKKTEEADEKVEEPS
                     QQTKSAAVVPPEKVRRFTVDRLKQLGVDVFIQPRLGADKDSFVILEEPETNRELEALK
                     QRFWKHANPAAKPRAAQQVNVNIIVKDVGPDGKEELKADTVPVTLAAEKLDGASHTKP
                     GEKLQVLKAKLQEAMKLRRSEERQKRQALLKLDNEDGFEEEEEEEEDMTDQSEEDGEE
                     EGEEALEEEEAKEEEEEEEGNQEIAEFLLGSEEIETKDEKEMDKENNDGNGEIGKSVG
                     LLSVPKPLLSDSTFLLFKDNSSKIGYSASEEKSEIDENSGKRPSKLDEDDSCSLLTKE
                     SSHNSSFELIGSTIPSYQPCNRQTGRGTSLFPTAGGFRSPSPGLFRASLVSSASKSSG
                     KLSEPSLPIEDSQDLYNASPEPKTLFLGAGDFQFCLEDDTQSQLLDADGFLNVRNHRN
                     QYQALKPRLPLASMDENAMDANMDELLDLCTGKFTSQAEKPLSRKSDKKENMEELLDL
                     CSGKFTSQDVSTLAPSESNKQEKENSLGDPMEEALTLCSGSFPTDREEEGEEEEFGDF
                     QLVPNDNEFDSNEDEHSDSDNEDPALEDQEDNDEEDLLQQSEKLKRQMRLKKYLEDEA
                     EVSGSDVGSEDEYDGEELDEYEEDVIDELLPSDEELQSQIKKIHMKTMLDDDKRQLRL
                     YQERYLADGDLHSDGPGRMRKFRWKNIDDASQMDLFHRDSDDDQTEEQLDETEARWRK
                     ERIEREQWLRDQAQQGKIAAEEEEIGEDSQFMMLAKKVTAKALQKNVCRTVVIQESES
                     LFRNPFEATKPGSDNQLKTGSLLNQPKAVLQKLAALSDLNPSAPRNSRNFVFHTLSPV
                     KAEAAKESSKPRVRRRGPSLMTSPSPKRLKTDDSASGSKQSIFRYLES"
ORIGIN      
        1 cgccgctgcc tggcaggaga gtgcgggagc agctgcgtcc cgggtgcggg aagcggagac
       61 ctgcttcttc ctgagcggcg cgctgcggag gccggagtca tgacgggaga agtggtttcc
      121 gaggttcacc tagaaatcaa tgattcaaaa ctcatttcac aagaagaagc agatagtcct
      181 tcagacagtg gacagggcag ctgtgaaata gttgggctct tgagtgaaca agattcagat
      241 gaagagatat ttgtgagtaa gaaattgaaa agcaggaagg tgctacaaga gagtgattct
      301 gaacaagagg gcacaaatgc ctctccagag aatactacct atgacgatat agaggaggaa
      361 gataaggaga acttacatgc tggaaaaaat ggaaaagtca gaaggattta cagaactctg
      421 gtgaacagtg atgagagtga catcgaggag tctttgtgtc aggaaaatct tgaaacccaa
      481 gtgacacctt gcttagagct gagtctccaa cctgaaaact ctgcggattt tacagttgac
      541 agaaagattt ccaaaaaacc catacatgat aaagaaggaa ttggaggaaa agcaaaagta
      601 aaatcaaagc gaagactcaa gaaagaggag agaaagatgg agaaaattaa gcagctgaaa
      661 aagaaggaaa caaaaaatga ggaagatgat gtgaaacagc tatttaatga cagtggctgt
      721 ctacttgtgg ataaagacct ttttgaaact gggttggagg aggaaaataa ctctccatta
      781 gaagatgaag agtcattaga atcaataagg gaagctgtga aaaacaaagt aaaaaagcac
      841 aaggaaagaa aggcagccaa gttaagtaag gaagcattaa aaaaattgca tagtgagact
      901 cagcgcctta ttcgagaggc tgcacttaat cttccatatc atatgcctga gaataaaact
      961 gttcatgaat tcttcaaacg taaaccccgg cccacttgcc agggaaatgc catggcacta
     1021 ctgaagtcat ctaagtatca ggcaagccat cacaaagaaa tcacagacac tgaaaataca
     1081 actgagataa atagtgacca ccatagcaaa gattctgagc agacaacagg tgcaggatat
     1141 gaaatggaaa ttaatgcact ccctgcagtt tcaaaggaac cccagatcac tactggatca
     1201 gatgagtctt gcagtaagaa gttgacagga agtgaagagc tagacattcc cgagaaacag
     1261 gagcagagtg atgctagacc ttcacctggg gacatctcgg tggcacgaca ggaatgcagc
     1321 ttccttggga ataaggacag tgaggagcat caggctggag ggcttgtggc acctgaacct
     1381 tgtgccctgg aggaagaaga aggcctgaaa aaaacagaag aagcagatga gaaggtggaa
     1441 gagcccagcc agcaaactaa atcagcagca gtggtgccac ctgaaaaagt gaggaggttc
     1501 actgtggata gactgaagca actgggagta gatgttttca ttcagcctcg gctgggtgct
     1561 gacaaagatt cttttgtgat acttgaagaa cctgaaacca acagagaact ggaagctttg
     1621 aagcagcgtt tctggaagca tgctaatcca gcagccaaac ccagggctgc tcagcaggtg
     1681 aatgtgaaca tcatagtgaa agatgtgggc cctgatggaa aggaagagct caaggcagat
     1741 acggtacctg tgactttggc agctgagaag ctggatggag caagccacac aaaaccaggg
     1801 gaaaagcttc aggtgctgaa agctaagctg caagaagcaa tgaaactccg aaggtctgag
     1861 gagcgccaaa agcgccaagc attacttaag ttagataatg aagatggatt tgaagaagag
     1921 gaggaggagg aggaagacat gacggatcag tccgaggaag acggagaaga ggagggagag
     1981 gaagctttgg aggaagaaga ggcgaaagag gaggaagagg aggaagaagg caatcaggag
     2041 attgcagaat tccttctcgg tagtgaagaa atagaaacca aagatgagaa agaaatggat
     2101 aaagaaaaca atgatggcaa tggtgaaatt ggcaagtcag ttggccttct ctctgtcccc
     2161 aagcctctct tgtcagattc taccttcctt ctatttaagg acaactcttc caagataggt
     2221 tactctgcta gtgaagaaaa atcagaaata gatgaaaact caggcaaaag acctagcaaa
     2281 ctagatgaag atgattcgtg ctcattactg acaaaggaga gcagccacaa tagcagcttt
     2341 gagctgatag gctccacaat tccatcctat cagccttgca acagacaaac aggccgtggg
     2401 accagtcttt ttcctacggc aggaggattc agatctcctt cccctggact atttcgagcc
     2461 agtttggtca gctcagcttc taagagttca ggaaagctgt ctgagccttc acttcccata
     2521 gaggattccc aggatctgta taacgcctcc ccagagccta agacactttt cctaggagca
     2581 ggagacttcc agttctgttt agaagatgac actcagagcc aactgttgga tgcagatggg
     2641 ttcttaaatg ttagaaacca caggaatcag taccaagctt tgaagcctcg attgccgttg
     2701 gccagtatgg atgagaacgc catggacgcc aacatggatg agctgttgga tttgtgtacg
     2761 ggaaagttca catctcaggc tgaaaaacct ctgtccagga agagcgacaa gaaggagaac
     2821 atggaggaac ttctggatct gtgttcagga aaatttactt ctcaggatgt ctctactctg
     2881 gctccatcag agtcaaataa gcaggagaag gagaacagtc tgggtgatcc aatggaagaa
     2941 gcacttactc tttgctcagg ctctttccca acagacaggg aagaagaggg tgaagaggag
     3001 gaatttggag actttcagct tgtcccaaat gataatgagt ttgatagtaa tgaggatgaa
     3061 cacagtgact ctgacaatga agacccggca ctagaagacc aggaagataa tgatgaggaa
     3121 gacctcctgc agcaatccga gaagttgaaa aggcaaatga gattgaagaa atacctggag
     3181 gatgaggcag aggtgtcagg gagtgacgtg ggaagtgaag atgagtatga tggggaagag
     3241 cttgatgaat atgaagagga tgtaattgat gaattacttc cttctgatga ggaactgcag
     3301 agtcaaatca agaaaataca catgaaaaca atgttggatg atgataaacg acagttacgt
     3361 ttgtaccaag aaaggtacct tgctgatggg gacctgcaca gtgatggtcc tggacgaatg
     3421 aggaaattcc gatggaagaa catagatgat gcttcccaga tggacttgtt ccacagagac
     3481 tctgatgacg atcagactga agaacagctt gatgagacag aagccagatg gaggaaggag
     3541 cgaattgaac gagaacagtg gcttcgggac caggcacagc aggggaaaat tgcagctgaa
     3601 gaagaagaga ttggggaaga tagtcagttt atgatgctgg ccaagaaagt tacagccaaa
     3661 gctctgcaga agaatgtctg tcgcactgtg gttattcaag aatcagagtc tttattcaga
     3721 aatccttttg aagccaccaa accaggaagt gacaaccagc tgaagacggg ctcactgcta
     3781 aaccagccca aagctgtgct tcagaaactg gctgccctgt ctgacctcaa ccctagtgct
     3841 ccccgaaatt caagaaactt tgtcttccac acactttctc ctgtcaaggc tgaggcagca
     3901 aaggaatcat ctaagcctcg ggtaaggaga agaggtccgt ctttaatgac atccccttca
     3961 cctaagcgcc tcaaaacaga tgatagcgct tcaggatcga agcaaagcat cttcagatac
     4021 ttggaaagct aacaccacaa gggcactggc acctgtgttg agacttcgtt gagaagtttc
     4081 tggcattgaa ggttggaatc gatgctcata tggattatcc ccccttcctt cataatcagt
     4141 gcattaaggt tgaggacaga gattccagtt ctttccactg catggctctg gacatctctt
     4201 tcctagcatt acttcctggg ttggccacta acttaattct tcagtgttta caacatcaac
     4261 ttatgggata cctgggtgtc ctccattaaa tatttgacat tttatcctag cagcttcctg
     4321 ggttgataac ttttggtgaa aggggtgatt ggaggaagaa aaagtatggc atgacagaaa
     4381 attacagaca gcagtgaaca tcaaaactgg gatgactcct tcacacccct atgatctgca
     4441 ccatggtgac caggactcag tgaaagagag acttcttaga ggatctagca atcgacacac
     4501 gggctgtttt attagttttg ccccttccat tttcttttat gtctcttccc agtgcagtct
     4561 caaatttcca attaacctgt acttccttta taataaggac tcaaactggt accctagtca
     4621 gaaagagcaa cttttctgga gtatgaggat gaagataaaa ggttacatcc agtgtccgta
     4681 gacattagat attccgtggg gcagagagct ctctcttagg actaaatttt cgatttgaag
     4741 cactgttgct caaggacctt ccttctcatt ctgactggaa gagttatata taatcattat
     4801 ttattgcatt aaactgggtt gagtacattg ccctgagcag aggacaattt aatacttcat
     4861 tacttatttt gagaaaagat catcttggag tttcatcaaa atatttttag gattgccacc
     4921 actcccgatt ttccctgaac taccatgagg ctgtcagagt tttagacaga tttttttttt
     4981 cctctcagaa ccaagtgtca ctgctgcttt ggaaaaacat ttcatgtaaa tactgtggtt
     5041 ttactttcag gagctggact tgggaagctg gatgaactgt gccagttttt cactggcaga
     5101 taaggaatac caatttaact ggtggaatta ggatataggt tttctacagt tgtttgtaat
     5161 atgcaagatg ctgactttga tggaatttac atttgtatat ttgtaatctt gtaatagtga
     5221 aaatgtatat aaagatgttt taatatgtat gtagtttttc aataaatccc aatgccttga
//
LOCUS       XM_032614000            1345 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus GIPC PDZ domain containing family member
            2 (GIPC2), transcript variant X1, mRNA.
ACCESSION   XM_032614000
VERSION     XM_032614000.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1345
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1345
                     /gene="GIPC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744376"
     CDS             71..1033
                     /gene="GIPC2"
                     /codon_start=1
                     /product="PDZ domain-containing protein GIPC2 isoform X1"
                     /protein_id="XP_032469891.1"
                     /db_xref="GeneID:116744376"
                     /translation="MPLRLRRKKKFNTKETSRLVEGEQTNAAGGSLPRLPAPTCRLAF
                     HTQLAHGSATGRVENFSSIQELYAKIASVFEISPSEILYCTLNTPKVDMGKLLGAQIG
                     LEDFIFAHVKGIKKEVNVYKSEDSLGLTITDNGAGYAFIKRIKDGSIVDSVKTICVGD
                     HIEAINGETILGWRHFDVAKKLKELKKEELFTLKLIEPKKAFDMEPRSKAGKSSTGRI
                     GTGRETLRLRSKGPATVEEVPSETKTKAIGKVDDLLELYMGIRDIDLDPHGIPWQLQA
                     LRHRAQMTAMAPPSTSSWWQAQWERGRAFSKSFKQNAQDRLCLK"
     misc_feature    398..676
                     /gene="GIPC2"
                     /note="PDZ domain of PDZ domain-containing protein GIPC2,
                     and related domains; Region: PDZ_GIPC2; cd23078"
                     /db_xref="CDD:467291"
     misc_feature    order(446..466,494..496,503..505,593..595,605..607,
                     614..619)
                     /gene="GIPC2"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467291"
     misc_feature    797..>865
                     /gene="GIPC2"
                     /note="GIPC homology 2 (GH2) domain-like family; Region:
                     GH2_like; cl41749"
                     /db_xref="CDD:425380"
ORIGIN      
        1 ctgcgggccc aggccaagga ggcagcagtc cgtggcagtg caggtgggtc cccgccctcg
       61 gccaggcaag atgcccctgc ggctgcggag aaaaaagaaa ttcaatacca aggagacctc
      121 ccggctggtg gagggcgagc agactaatgc ggctggcggc agcctaccca ggctcccggc
      181 gcccacctgc aggctggctt tccacacgca gctggcccac ggcagcgcca cgggcagagt
      241 ggagaacttc tccagcatcc aggagctcta cgccaagatc gcgagcgtgt ttgagatttc
      301 gccgtcggag atcttatatt gcactttaaa tacacctaaa gttgacatgg gaaaactctt
      361 aggagcacag ataggtcttg aagatttcat atttgcccat gtgaaaggga tcaaaaaaga
      421 agtgaatgtg tataaatctg aggattcact tggtctcacc attacagata atggtgctgg
      481 ctatgctttt ataaagagaa ttaaagatgg cagcatagtt gactcagtta aaacaatctg
      541 tgtgggggat cacattgaag ccatcaatgg agaaactatc cttgggtggc gccactttga
      601 tgttgctaag aagttaaagg aattaaaaaa agaggaactc tttaccttga agttaataga
      661 acctaagaag gcctttgaca tggagcctag gtcaaaagct ggaaagtcat caacaggaag
      721 gattggtact ggaagggaga cacttcgcct gagatcaaaa ggtcctgcca ctgtggaaga
      781 agtgccctct gaaaccaaaa caaaggcgat tggaaaggtt gatgatcttc ttgaattgta
      841 catgggaatt cgagatatcg atttagatcc ccatggtatc ccctggcagc ttcaggccct
      901 ccgtcataga gcccaaatga cagccatggc tccaccctct acatcttctt ggtggcaagc
      961 acagtgggag agagggaggg ccttttccaa gtcattcaaa caaaatgctc aggatcgtct
     1021 ctgtctcaag tgaattagtc acagaggcca gggaggtggt taggtctggg tcaaatgctc
     1081 tacctatgca acagagagtg actctgaaat acaagggctg agattgtgca gggcctggtc
     1141 cctccagtgt agaagcaaat gataaatgtt cccttaagaa gggcaggtgg atgctggatg
     1201 gggaaagagt gaatgagaat gctagtggtg gggtgtgtgc ctgcatgcat ctgtgtgtgt
     1261 gggcgtgggt gaatttgtat caggtactta ataaattttt taaagtcaaa gactgggact
     1321 attttattta cttgctacca gggaa
//
LOCUS       XM_032614009            2402 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus GIPC PDZ domain containing family member
            2 (GIPC2), transcript variant X2, mRNA.
ACCESSION   XM_032614009
VERSION     XM_032614009.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2402
                     /gene="GIPC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 8
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744376"
     CDS             89..1024
                     /gene="GIPC2"
                     /codon_start=1
                     /product="PDZ domain-containing protein GIPC2 isoform X2"
                     /protein_id="XP_032469900.1"
                     /db_xref="GeneID:116744376"
                     /translation="MPLRLRRKKKFNTKETSRLVEGEQTNAAGGSLPRLPAPTCRLAF
                     HTQLAHGSATGRVENFSSIQELYAKIASVFEISPSEILYCTLNTPKVDMGKLLGAQIG
                     LEDFIFAHVKGIKKEVNVYKSEDSLGLTITDNGAGYAFIKRIKDGSIVDSVKTICVGD
                     HIEAINGETILGWRHFDVAKKLKELKKEELFTLKLIEPKKAFDMEPRSKAGKSSTGRI
                     GTGRETLRLRSKGPATVEEVPSETKTKAIGKVDDLLELYMGIRDIDLATTMFEAGKDK
                     GNPDEFAVALDETLGDFAFPDEFVFDVWGVIGDAK"
     misc_feature    416..694
                     /gene="GIPC2"
                     /note="PDZ domain of PDZ domain-containing protein GIPC2,
                     and related domains; Region: PDZ_GIPC2; cd23078"
                     /db_xref="CDD:467291"
     misc_feature    order(464..484,512..514,521..523,611..613,623..625,
                     632..637)
                     /gene="GIPC2"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467291"
     misc_feature    815..1009
                     /gene="GIPC2"
                     /note="GIPC-homology 2 (GH2) domain found in the GIPC
                     family; Region: GH2_GIPC; cd21180"
                     /db_xref="CDD:409666"
     misc_feature    order(851..853,860..877,965..967)
                     /gene="GIPC2"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409666"
     misc_feature    order(854..868,872..874,878..883,962..970,974..976,
                     980..982)
                     /gene="GIPC2"
                     /note="myosin VI binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409666"
ORIGIN      
        1 aggcccatag cacaaagtct gcgggcccag gccaaggagg cagcagtccg tggcagtgca
       61 ggtgggtccc cgccctcggc caggcaagat gcccctgcgg ctgcggagaa aaaagaaatt
      121 caataccaag gagacctccc ggctggtgga gggcgagcag actaatgcgg ctggcggcag
      181 cctacccagg ctcccggcgc ccacctgcag gctggctttc cacacgcagc tggcccacgg
      241 cagcgccacg ggcagagtgg agaacttctc cagcatccag gagctctacg ccaagatcgc
      301 gagcgtgttt gagatttcgc cgtcggagat cttatattgc actttaaata cacctaaagt
      361 tgacatggga aaactcttag gagcacagat aggtcttgaa gatttcatat ttgcccatgt
      421 gaaagggatc aaaaaagaag tgaatgtgta taaatctgag gattcacttg gtctcaccat
      481 tacagataat ggtgctggct atgcttttat aaagagaatt aaagatggca gcatagttga
      541 ctcagttaaa acaatctgtg tgggggatca cattgaagcc atcaatggag aaactatcct
      601 tgggtggcgc cactttgatg ttgctaagaa gttaaaggaa ttaaaaaaag aggaactctt
      661 taccttgaag ttaatagaac ctaagaaggc ctttgacatg gagcctaggt caaaagctgg
      721 aaagtcatca acaggaagga ttggtactgg aagggagaca cttcgcctga gatcaaaagg
      781 tcctgccact gtggaagaag tgccctctga aaccaaaaca aaggcgattg gaaaggttga
      841 tgatcttctt gaattgtaca tgggaattcg agatatcgat ttagctacta caatgtttga
      901 agctggaaag gacaaaggta atccggatga atttgctgtg gcacttgatg aaacccttgg
      961 agactttgcg ttcccagatg agtttgtctt tgatgtttgg ggagtcattg gtgatgccaa
     1021 atgaggatga ttatgatgtg aatcatcgtc tctggaggaa taaaaaaaaa aaaaagttaa
     1081 gatctgcttt tagacactgt tatggactct ggcttgtttt atgtgtatga atacattctt
     1141 ttgaaatata gttttgattt ctgggcactt tttaatgcag ttgcatatgt agtatactta
     1201 agataaatta cctaaaacgt gatcaatttt aatactcatt taaaagcttt ttaaagttag
     1261 ttttagagag tatttctaga taggttattt tggtccccat tgacagccgt gttttgtttt
     1321 ccatgtataa gtagttgatt gaaattgctt tgtagttctt ttgcaaaatc ttaatgcagt
     1381 gaaaatgagg attggagtat aatttgcctc atagcgtctt cattttgtta tactagcttg
     1441 aacaggatat gttcaggaca tgaaatacga attatgccta ctagaggtct agaaacattt
     1501 tttttttaaa tccactgaat aaggagagga agattcctat agcctgttga tgtctatggc
     1561 ttacttactc tctttgtaaa acaaggattg attgactttt attttttgct tctttgtaat
     1621 tgcttccttg cttcttaaac ttgttgaaat ctattgtgtt gtgtatgtat ttgcacatgt
     1681 agaagaaggt gaaagagagg cagatatggt agaaaccact tatatttgat ttttctgtag
     1741 cagttcttac aacactattt cttttccatc catacctact gttatgttac cctttagaag
     1801 cattccaggg aaagttttta tagtctttgt agaacttttc ttttgaaaga tgtttactca
     1861 gaaaataact atgtttgaga acatttttgg gggttaaaga gcaacacttt tttttttttg
     1921 gaagagcaac acttttaagc ctcctgaact taaaaggaga tactatcagc agtagatttc
     1981 cccctagtga aaatgcagga ggaagggaaa attgagaaaa gatattagct tattatttta
     2041 gagttctaat gcactctctc tgaaacctta cattattgag aaaattgagg gtaaatgact
     2101 gttttatcac tcttaacttg acattttaca catgtaagag aaatggaaat gaatggtttc
     2161 aacatagatc atttaataag gcagagcatg gtgtgaccag gtgttcttct aaaatgttag
     2221 atggaaaatg ctgcatgctg ccgtggtaat cagaaataat aacctgtgag gggtgtattc
     2281 taggaaatca aaagtagttc ccttttcatg ctgggttgat gcttagataa ctcttgtttt
     2341 ctggtgcaac ttcactttaa ctgcattccg ctctcttttt cacataaatt taattctatg
     2401 aa
//
LOCUS       XM_032614019            2087 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus GIPC PDZ domain containing family member
            2 (GIPC2), transcript variant X3, mRNA.
ACCESSION   XM_032614019
VERSION     XM_032614019.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2087
                     /gene="GIPC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 85% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116744376"
     CDS             71..889
                     /gene="GIPC2"
                     /codon_start=1
                     /product="PDZ domain-containing protein GIPC2 isoform X3"
                     /protein_id="XP_032469910.1"
                     /db_xref="GeneID:116744376"
                     /translation="MPLRLRRKKKFNTKETSRLVEGEQTNAAGGSLPRLPAPTCRLAF
                     HTQLAHGSATGRVENFSSIQELYAKIASVFEISPSEILYCTLNTPKVDMGKLLGAQIG
                     LEDFIFAHVKGIKKEVNVYKSEDSLGLTITDNGAGYAFIKRIKDGSIVDSVKTICVGD
                     HIEAINGETILGWRHFDVAKKLKELKKEELFTLKLIEPKKAFDMEPRSKAGKSSTGRI
                     GTGRETLRLRSKGPATVEEVPSETKTKAIGKVDDLLELYMGIRDIDLVLKLCPI"
     misc_feature    398..676
                     /gene="GIPC2"
                     /note="PDZ domain of PDZ domain-containing protein GIPC2,
                     and related domains; Region: PDZ_GIPC2; cd23078"
                     /db_xref="CDD:467291"
     misc_feature    order(446..466,494..496,503..505,593..595,605..607,
                     614..619)
                     /gene="GIPC2"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467291"
     misc_feature    797..>865
                     /gene="GIPC2"
                     /note="GIPC homology 2 (GH2) domain-like family; Region:
                     GH2_like; cl41749"
                     /db_xref="CDD:425380"
ORIGIN      
        1 ctgcgggccc aggccaagga ggcagcagtc cgtggcagtg caggtgggtc cccgccctcg
       61 gccaggcaag atgcccctgc ggctgcggag aaaaaagaaa ttcaatacca aggagacctc
      121 ccggctggtg gagggcgagc agactaatgc ggctggcggc agcctaccca ggctcccggc
      181 gcccacctgc aggctggctt tccacacgca gctggcccac ggcagcgcca cgggcagagt
      241 ggagaacttc tccagcatcc aggagctcta cgccaagatc gcgagcgtgt ttgagatttc
      301 gccgtcggag atcttatatt gcactttaaa tacacctaaa gttgacatgg gaaaactctt
      361 aggagcacag ataggtcttg aagatttcat atttgcccat gtgaaaggga tcaaaaaaga
      421 agtgaatgtg tataaatctg aggattcact tggtctcacc attacagata atggtgctgg
      481 ctatgctttt ataaagagaa ttaaagatgg cagcatagtt gactcagtta aaacaatctg
      541 tgtgggggat cacattgaag ccatcaatgg agaaactatc cttgggtggc gccactttga
      601 tgttgctaag aagttaaagg aattaaaaaa agaggaactc tttaccttga agttaataga
      661 acctaagaag gcctttgaca tggagcctag gtcaaaagct ggaaagtcat caacaggaag
      721 gattggtact ggaagggaga cacttcgcct gagatcaaaa ggtcctgcca ctgtggaaga
      781 agtgccctct gaaaccaaaa caaaggcgat tggaaaggtt gatgatcttc ttgaattgta
      841 catgggaatt cgagatatcg atttagtatt aaagttgtgc cccatttaat aagattactg
      901 aaaccttgtg aacaatggat caaatatgaa gaaagcagac acacttggca tgtgacgaac
      961 aagggcattt gaatttctgt gtatttcttt attttatttt ttaaaaattt tatttattta
     1021 ttttttggca gcgatgggtc ttcgtggctg catacgggct ttctctagtt gcagtgagca
     1081 gggctactct tccttgcagt gtgcaggtgt ctcattgtgg tggcttctct tgttgtggag
     1141 catgggctct aggcatgcag gcttcagtag ttgtggctca cgggctctag agcacaggct
     1201 cagtagttgt ggcgcatggg cttagttgct ccacagcatg tgggatcttc ccggaccagg
     1261 gctcgaaccc ctgtcccctg cattagcagg cggattctta accactgtgc caccagggaa
     1321 gccctctgtg tatttcttat gtcatcatta ggatgtcagt atcttgatct ctcagttaag
     1381 actctatcaa ttgcagataa caaatgaaac aaaacaaaac tcaacaaatc taattccaac
     1441 tggcttaagg gaatgttaag ccagggaaat gttctggttc ttatagctga aaattccaga
     1501 ggtagatctt ggcttcaaaa atggttagaa ctggaattct cacgctgtca tcaggatgtg
     1561 gtttctcttc tctcaattct ggcttcattt cagatcccca tggtatcccc tggcagcttc
     1621 aggccctccg tcatagagcc caaatgacag ccatggctcc accctctaca tcttcttggt
     1681 ggcaagcaca gtgggagaga gggagggcct tttccaagtc attcaaacaa aatgctcagg
     1741 atcgtctctg tctcaagtga attagtcaca gaggccaggg aggtggttag gtctgggtca
     1801 aatgctctac ctatgcaaca gagagtgact ctgaaataca agggctgaga ttgtgcaggg
     1861 cctggtccct ccagtgtaga agcaaatgat aaatgttccc ttaagaaggg caggtggatg
     1921 ctggatgggg aaagagtgaa tgagaatgct agtggtgggg tgtgtgcctg catgcatctg
     1981 tgtgtgtggg cgtgggtgaa tttgtatcag gtacttaata aattttttaa agtcaaagac
     2041 tgggactatt ttatttactt gctaccaggg aaagtatttt actttac
//
LOCUS       XM_032614032            3468 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 5 member 9
            (SLC5A9), transcript variant X1, mRNA.
ACCESSION   XM_032614032
VERSION     XM_032614032.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3468
                     /gene="SLC5A9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 31 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744384"
     CDS             1..2046
                     /gene="SLC5A9"
                     /codon_start=1
                     /product="sodium/glucose cotransporter 4 isoform X1"
                     /protein_id="XP_032469923.1"
                     /db_xref="GeneID:116744384"
                     /translation="MSVELAAMGPGASGNGVSTATVPRSAPGPGGSLHAYDIAVLVVY
                     FVFVIGVGIWSSIRASRGTIGGYFLAGRSISWWPIGASLMSSNVGSGLFIGLAGTGAA
                     GGLAVGGFEWNATWLLLALGWIFVPVYIAAGVVTMPQYLKKRFGGQRIQVYMSVLSLI
                     LYIFTKISTDIFSGALFIQMALGWNLYLSTVILLVVTAVYTITGGLTAVIYTDTLQTV
                     IMVGGALVLMFLGFQEVGWYPGLEQRYRQAIPNVTVPNTTCHLPRPDAFHMLRDPVSG
                     DIPWPGLIFGLTVLATWCWCTDQVIVQRSLSAKSLSHAKGGSVLGGYLKILPMFFIVM
                     PGMISRALYPDEVGCVDPDICQRICGARVGCSNIAYPKLVMALMPMGLRGLMIAVIMA
                     ALMSSLTSIFNSSSTLFAIDVWQHFRRQATEQELMVVGRVFVVFLVVISILWVPIIQS
                     SNSGQLFDYIQSVTSYLAPPITALFLLAIFCKRVTEPGAFWGLICGLVVGLLRMTLEF
                     SYPAPACGEADPRPAVLKDFHYLYFALLLCGLTAIVIVTVSLCTAPIPEEKLARLTWW
                     TRHRPHSELKREARESTAGTADVPSGEGPTGAGGTENPRHGQEQPAAPRRSRGQLLWG
                     WLCGLSWAPEQALSPAEKAALEQKLTSIEEEPLWRSVCNINAVLLLAVNIFLWGYFA"
     misc_feature    109..2043
                     /gene="SLC5A9"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; Region: SLC5-6-like_sbd; cl00456"
                     /db_xref="CDD:444915"
     misc_feature    order(253..255,262..264,1177..1179,1186..1191)
                     /gene="SLC5A9"
                     /note="Na binding site [ion binding]; other site"
                     /db_xref="CDD:271356"
ORIGIN      
        1 atgagcgtgg agctggcagc aatggggcct ggagcttcgg gaaatggggt cagcactgcg
       61 acagttccgc gctcagcacc gggtcctgga ggcagcctgc atgcctacga catcgcggtc
      121 ctggtcgtct actttgtctt tgtcattggc gtggggatct ggtcgtccat ccgtgccagc
      181 cgagggacca ttggcggcta cttcctggcg ggaaggtcca taagctggtg gccaattgga
      241 gcatctctga tgtccagcaa tgtgggcagc ggtctgttca tcggcctggc tgggacaggg
      301 gccgctggag gccttgctgt gggtggcttt gagtggaatg caacctggct gcttctggcc
      361 ctcggctgga tcttcgtccc cgtgtacatc gcagccggtg tggtcacaat gccgcagtac
      421 ctgaagaagc gattcggggg ccagaggatc caggtgtata tgtctgtcct ttctctcatc
      481 ctctacatct tcaccaagat ttcaactgac atcttctctg gagccctctt catccagatg
      541 gctttgggct ggaaccttta cctctccact gtgatcctgc tggtggtgac ggccgtctat
      601 accatcacag ggggcctcac ggccgtgatc tacacagaca ctctgcagac ggtgatcatg
      661 gtggggggag ccctggtcct catgtttctg ggctttcaag aggtgggctg gtacccaggc
      721 ctggagcaga ggtacaggca ggccatccct aatgtcacag tccccaacac cacctgtcac
      781 ctcccccggc ccgacgcctt ccacatgctc cgggaccctg tgagcgggga catcccttgg
      841 ccaggcctca ttttcgggct cacggtgctg gccacgtggt gctggtgcac cgaccaggtc
      901 attgtgcaga ggtctctctc cgccaagagt ctgtcccacg ccaagggggg ctccgtgctg
      961 gggggctacc tgaagatcct tcccatgttc tttatcgtca tgcctggcat gatcagccgg
     1021 gccctgtacc cagatgaagt gggctgcgtg gaccctgaca tctgccaaag aatctgcggg
     1081 gcccgcgtgg gatgctccaa cattgcctac cccaagctgg tcatggcgct catgcccatg
     1141 ggtctgcggg gcctgatgat cgcagtgatc atggccgccc tcatgagctc actcacctcc
     1201 atcttcaaca gcagcagtac cctgtttgcc attgacgtgt ggcaacactt ccgcagacag
     1261 gcaacagagc aggagctgat ggtcgtgggc agagtgtttg tggtgttcct cgtcgtcatc
     1321 agcatcctct gggtccccat catccaaagc tccaacagcg ggcagctctt cgactacatc
     1381 cagtctgtca ccagctacct ggccccaccc atcactgccc tcttcctgct ggccatcttc
     1441 tgcaagaggg tcacagagcc tggagccttt tggggcctca tatgtggcct ggtggtgggg
     1501 cttctgcgca tgaccctgga gttctcgtac ccagccccag cctgtgggga ggcagacccg
     1561 aggccggccg tgctgaaaga cttccactac ctctactttg cactcctcct ctgtgggctc
     1621 acggccatcg tcatcgtcac tgtcagcctc tgcacagccc ccatccccga ggaaaagctc
     1681 gctcgcctga cgtggtggac acggcaccgt cctcactctg agctgaagag ggaggcgcgg
     1741 gagagcacag cagggacagc ggacgtgcca tctggggagg gtcctacagg ggccggaggg
     1801 acagagaacc ccaggcacgg ccaggaacag cctgcagccc cacgcaggtc ccggggacag
     1861 ctgctctggg gctggctctg cgggctgtcg tgggccccgg agcaagcgct gagccccgca
     1921 gagaaggccg cgctggagca gaaactgacc agcatcgagg aggagccgct ctggagaagc
     1981 gtctgcaaca tcaacgccgt cctcctgctg gccgtcaaca tcttcctctg gggctatttt
     2041 gcgtgactct gcaggcctgg tatcacccaa ggcaggttaa acacagccag gcctggccgg
     2101 ccggagacag gctcccttcc cacctcgctg tccacactga gccctcagag gctgagactg
     2161 caggaacccc taaagagcac cctgtccagc cagtacactg aagggtggag ccaggaggcc
     2221 cagagagggc gctgggtctg ctcaggccac acagcaggac tcgcactggg tcgcctgact
     2281 ccaactcttc tccactacag tacctttcac tcctacctca aaaacactat ttctgccctc
     2341 tggtgagtct gtccaggagc ttttactcta catgtgtcat gaggtcaaaa aagtggaaga
     2401 tacaagaaaa agagtggcaa gaaagttgca aaaatcctca tgcatctttg ctcacccatt
     2461 tcccttcctt gtcccctttc tccctccttt actctctggc tcccaatccc cggtcaccta
     2521 tttccagcga gaatctcccc aggaaggcct tatactttca ctggcggctc cgcactggtg
     2581 gctgtcagac ccgaaggagc gagggaccag ggaccagggt ggagggtaaa catggtggca
     2641 gatggcattt gggcagggag ctctccttga caccactcaa atctgcctct tcttaccctc
     2701 acatccaaac atgcatcaag tctccagcct cgaggaactt agaggccagc tggaaagaca
     2761 tgacgtgttg gagacaagag gagtcaagac gggctgctgg gtgctatgag caagccctgc
     2821 agaggggcag cacggacagc ctaggaggcc ccacagctgc gcctgtgccc cctccctctg
     2881 cctgccaggc atctggctac tctggaaagc accatgacct tgcctgggtg tccctcctcc
     2941 aggaagctgc ccgataccca caactggatc aaagtcccat tcctgctcgc acagcctctg
     3001 gacctgcttc tgcggcagca ccgatcactg cgttgtgagg tttgcctcct ggaccagact
     3061 gagcactcca aggggtagga accaaggacc gcatcccaag tgactttgta cccagaaagt
     3121 aacaggtgtt gccttggtaa cagtaaacgt tgaattggta attctccaaa gtcctagtag
     3181 gctttgcact acagctggct gggtggtgag cttggaaacc agtggtgggg aggaatctcc
     3241 ttcagtcgga gtttacacgc tgagtctcag atgtctagaa caaaaccaca gcttcgtccc
     3301 attgccaaag tcatccgtga gattgtctct tcctttttct atcttcctgt ctaggctgtc
     3361 cctgctctca tgggaccctc tttaatgctg cctcggatca tcattttatg ctaatcactc
     3421 atcataattg aatacaaata aaattcttgt tttgagggtt taaataca
//
LOCUS       XM_032614042            3352 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 5 member 9
            (SLC5A9), transcript variant X2, mRNA.
ACCESSION   XM_032614042
VERSION     XM_032614042.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3352
                     /gene="SLC5A9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744384"
     CDS             11..1930
                     /gene="SLC5A9"
                     /codon_start=1
                     /product="sodium/glucose cotransporter 4 isoform X2"
                     /protein_id="XP_032469933.1"
                     /db_xref="GeneID:116744384"
                     /translation="MGPGASGNGVSTATVPRSAPGPGGSLHAYDIAVLVVYFVFVIGV
                     GIWSSIRASRGTIGGYFLAGRSISWWPATWLLLALGWIFVPVYIAAGVVTMPQYLKKR
                     FGGQRIQVYMSVLSLILYIFTKISTDIFSGALFIQMALGWNLYLSTVILLVVTAVYTI
                     TGGLTAVIYTDTLQTVIMVGGALVLMFLGFQEVGWYPGLEQRYRQAIPNVTVPNTTCH
                     LPRPDAFHMLRDPVSGDIPWPGLIFGLTVLATWCWCTDQVIVQRSLSAKSLSHAKGGS
                     VLGGYLKILPMFFIVMPGMISRALYPDEVGCVDPDICQRICGARVGCSNIAYPKLVMA
                     LMPMGLRGLMIAVIMAALMSSLTSIFNSSSTLFAIDVWQHFRRQATEQELMVVGRVFV
                     VFLVVISILWVPIIQSSNSGQLFDYIQSVTSYLAPPITALFLLAIFCKRVTEPGAFWG
                     LICGLVVGLLRMTLEFSYPAPACGEADPRPAVLKDFHYLYFALLLCGLTAIVIVTVSL
                     CTAPIPEEKLARLTWWTRHRPHSELKREARESTAGTADVPSGEGPTGAGGTENPRHGQ
                     EQPAAPRRSRGQLLWGWLCGLSWAPEQALSPAEKAALEQKLTSIEEEPLWRSVCNINA
                     VLLLAVNIFLWGYFA"
     misc_feature    98..1927
                     /gene="SLC5A9"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; Region: SLC5-6-like_sbd; cl00456"
                     /db_xref="CDD:444915"
ORIGIN      
        1 gctggcagca atggggcctg gagcttcggg aaatggggtc agcactgcga cagttccgcg
       61 ctcagcaccg ggtcctggag gcagcctgca tgcctacgac atcgcggtcc tggtcgtcta
      121 ctttgtcttt gtcattggcg tggggatctg gtcgtccatc cgtgccagcc gagggaccat
      181 tggcggctac ttcctggcgg gaaggtccat aagctggtgg ccagcaacct ggctgcttct
      241 ggccctcggc tggatcttcg tccccgtgta catcgcagcc ggtgtggtca caatgccgca
      301 gtacctgaag aagcgattcg ggggccagag gatccaggtg tatatgtctg tcctttctct
      361 catcctctac atcttcacca agatttcaac tgacatcttc tctggagccc tcttcatcca
      421 gatggctttg ggctggaacc tttacctctc cactgtgatc ctgctggtgg tgacggccgt
      481 ctataccatc acagggggcc tcacggccgt gatctacaca gacactctgc agacggtgat
      541 catggtgggg ggagccctgg tcctcatgtt tctgggcttt caagaggtgg gctggtaccc
      601 aggcctggag cagaggtaca ggcaggccat ccctaatgtc acagtcccca acaccacctg
      661 tcacctcccc cggcccgacg ccttccacat gctccgggac cctgtgagcg gggacatccc
      721 ttggccaggc ctcattttcg ggctcacggt gctggccacg tggtgctggt gcaccgacca
      781 ggtcattgtg cagaggtctc tctccgccaa gagtctgtcc cacgccaagg ggggctccgt
      841 gctggggggc tacctgaaga tccttcccat gttctttatc gtcatgcctg gcatgatcag
      901 ccgggccctg tacccagatg aagtgggctg cgtggaccct gacatctgcc aaagaatctg
      961 cggggcccgc gtgggatgct ccaacattgc ctaccccaag ctggtcatgg cgctcatgcc
     1021 catgggtctg cggggcctga tgatcgcagt gatcatggcc gccctcatga gctcactcac
     1081 ctccatcttc aacagcagca gtaccctgtt tgccattgac gtgtggcaac acttccgcag
     1141 acaggcaaca gagcaggagc tgatggtcgt gggcagagtg tttgtggtgt tcctcgtcgt
     1201 catcagcatc ctctgggtcc ccatcatcca aagctccaac agcgggcagc tcttcgacta
     1261 catccagtct gtcaccagct acctggcccc acccatcact gccctcttcc tgctggccat
     1321 cttctgcaag agggtcacag agcctggagc cttttggggc ctcatatgtg gcctggtggt
     1381 ggggcttctg cgcatgaccc tggagttctc gtacccagcc ccagcctgtg gggaggcaga
     1441 cccgaggccg gccgtgctga aagacttcca ctacctctac tttgcactcc tcctctgtgg
     1501 gctcacggcc atcgtcatcg tcactgtcag cctctgcaca gcccccatcc ccgaggaaaa
     1561 gctcgctcgc ctgacgtggt ggacacggca ccgtcctcac tctgagctga agagggaggc
     1621 gcgggagagc acagcaggga cagcggacgt gccatctggg gagggtccta caggggccgg
     1681 agggacagag aaccccaggc acggccagga acagcctgca gccccacgca ggtcccgggg
     1741 acagctgctc tggggctggc tctgcgggct gtcgtgggcc ccggagcaag cgctgagccc
     1801 cgcagagaag gccgcgctgg agcagaaact gaccagcatc gaggaggagc cgctctggag
     1861 aagcgtctgc aacatcaacg ccgtcctcct gctggccgtc aacatcttcc tctggggcta
     1921 ttttgcgtga ctctgcaggc ctggtatcac ccaaggcagg ttaaacacag ccaggcctgg
     1981 ccggccggag acaggctccc ttcccacctc gctgtccaca ctgagccctc agaggctgag
     2041 actgcaggaa cccctaaaga gcaccctgtc cagccagtac actgaagggt ggagccagga
     2101 ggcccagaga gggcgctggg tctgctcagg ccacacagca ggactcgcac tgggtcgcct
     2161 gactccaact cttctccact acagtacctt tcactcctac ctcaaaaaca ctatttctgc
     2221 cctctggtga gtctgtccag gagcttttac tctacatgtg tcatgaggtc aaaaaagtgg
     2281 aagatacaag aaaaagagtg gcaagaaagt tgcaaaaatc ctcatgcatc tttgctcacc
     2341 catttccctt ccttgtcccc tttctccctc ctttactctc tggctcccaa tccccggtca
     2401 cctatttcca gcgagaatct ccccaggaag gccttatact ttcactggcg gctccgcact
     2461 ggtggctgtc agacccgaag gagcgaggga ccagggacca gggtggaggg taaacatggt
     2521 ggcagatggc atttgggcag ggagctctcc ttgacaccac tcaaatctgc ctcttcttac
     2581 cctcacatcc aaacatgcat caagtctcca gcctcgagga acttagaggc cagctggaaa
     2641 gacatgacgt gttggagaca agaggagtca agacgggctg ctgggtgcta tgagcaagcc
     2701 ctgcagaggg gcagcacgga cagcctagga ggccccacag ctgcgcctgt gccccctccc
     2761 tctgcctgcc aggcatctgg ctactctgga aagcaccatg accttgcctg ggtgtccctc
     2821 ctccaggaag ctgcccgata cccacaactg gatcaaagtc ccattcctgc tcgcacagcc
     2881 tctggacctg cttctgcggc agcaccgatc actgcgttgt gaggtttgcc tcctggacca
     2941 gactgagcac tccaaggggt aggaaccaag gaccgcatcc caagtgactt tgtacccaga
     3001 aagtaacagg tgttgccttg gtaacagtaa acgttgaatt ggtaattctc caaagtccta
     3061 gtaggctttg cactacagct ggctgggtgg tgagcttgga aaccagtggt ggggaggaat
     3121 ctccttcagt cggagtttac acgctgagtc tcagatgtct agaacaaaac cacagcttcg
     3181 tcccattgcc aaagtcatcc gtgagattgt ctcttccttt ttctatcttc ctgtctaggc
     3241 tgtccctgct ctcatgggac cctctttaat gctgcctcgg atcatcattt tatgctaatc
     3301 actcatcata attgaataca aataaaattc ttgttttgag ggtttaaata ca
//
LOCUS       XM_032614056             904 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgi transport 1A (GOLT1A), transcript
            variant X1, mRNA.
ACCESSION   XM_032614056
VERSION     XM_032614056.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..904
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..904
                     /gene="GOLT1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744391"
     CDS             205..603
                     /gene="GOLT1A"
                     /codon_start=1
                     /product="vesicle transport protein GOT1A isoform X1"
                     /protein_id="XP_032469947.1"
                     /db_xref="GeneID:116744391"
                     /translation="MISITEWQKIGVGTTGFGIFFILFGMLLYFDSVLLAFGNLLFLT
                     GLSLIIGLRKTFSFFFQRHKLKGTSFFLGGVVIVLLRWPLLGMFLETYGFFNLFKGFF
                     SVAFDFLGNTSNIPFLSMLFRRLQGTSSMV"
     misc_feature    214..531
                     /gene="GOLT1A"
                     /note="Got1/Sft2-like family; Region: Got1; cl02130"
                     /db_xref="CDD:470475"
ORIGIN      
        1 gggaagaacc cggagggaga ctcctgactg aaagcagccc tgtgtgcgcg cgcgcgtctg
       61 tctaggggga gttgatgatt taccagaggc tcatttcaca acttaccaag ggtcagcttc
      121 ccttgggcat gtacaagttc ggtcctctgg gctcctcacc ccttgccagc ttccacccgg
      181 aaggtccccc aggcagcccg cagcatgatc tccatcaccg aatggcagaa gattggtgtg
      241 ggcaccaccg gcttcggcat cttctttatc ctctttggaa tgctcctgta ctttgattcg
      301 gtgctcctgg ccttcggaaa cctgctgttc ctgactggcc tctccctcat catcggcctg
      361 aggaagacgt tttccttctt cttccagagg cacaagctca aggggaccag cttcttcctg
      421 gggggcgtgg tcatcgtgct tctgcgctgg cccctcctgg gcatgttcct ggaaacctat
      481 ggcttcttta acctcttcaa gggctttttc tctgtcgcct ttgacttctt gggcaatacc
      541 tccaacatcc ccttcctgag catgctgttc cggaggcttc aaggcaccag ctcaatggtc
      601 tgaacagcag agataagctg cttgaacttg catcattggt tgagggggct ggaaaggaaa
      661 tgggggccac cccctcaggc ccccacccca cactgactca tctccccatc atacccggac
      721 ctctccaagt ccagaaggaa ggatggagcc gagtgaccaa cctcaaaccc ccaagtcaat
      781 gcaagaagct gtcaggaccg ttgggagcag agatccaggt cccgaggaga ttgaacgggg
      841 atcacacccc accctgtatt tatcagagga aaagcaaaga ttaaatcccc aagctgtaaa
      901 tgtg
//
LOCUS       XM_032614066             818 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgi transport 1A (GOLT1A), transcript
            variant X2, mRNA.
ACCESSION   XM_032614066
VERSION     XM_032614066.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..818
                     /gene="GOLT1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744391"
     CDS             185..517
                     /gene="GOLT1A"
                     /codon_start=1
                     /product="vesicle transport protein GOT1A isoform X2"
                     /protein_id="XP_032469957.1"
                     /db_xref="GeneID:116744391"
                     /translation="MISITEWQKIGVGTTGFGIFFILFGMLLYFDSVLLAFGNRHKLK
                     GTSFFLGGVVIVLLRWPLLGMFLETYGFFNLFKGFFSVAFDFLGNTSNIPFLSMLFRR
                     LQGTSSMV"
     misc_feature    194..445
                     /gene="GOLT1A"
                     /note="Got1/Sft2-like family; Region: Got1; cl02130"
                     /db_xref="CDD:470475"
ORIGIN      
        1 ctcctgactg aaagcagccc tgtgtgcgcg cgcgcgtctg tctaggggga gttgatgatt
       61 taccagaggc tcatttcaca acttaccaag ggtcagcttc ccttgggcat gtacaagttc
      121 ggtcctctgg gctcctcacc ccttgccagc ttccacccgg aaggtccccc aggcagcccg
      181 cagcatgatc tccatcaccg aatggcagaa gattggtgtg ggcaccaccg gcttcggcat
      241 cttctttatc ctctttggaa tgctcctgta ctttgattcg gtgctcctgg ccttcggaaa
      301 caggcacaag ctcaagggga ccagcttctt cctggggggc gtggtcatcg tgcttctgcg
      361 ctggcccctc ctgggcatgt tcctggaaac ctatggcttc tttaacctct tcaagggctt
      421 tttctctgtc gcctttgact tcttgggcaa tacctccaac atccccttcc tgagcatgct
      481 gttccggagg cttcaaggca ccagctcaat ggtctgaaca gcagagataa gctgcttgaa
      541 cttgcatcat tggttgaggg ggctggaaag gaaatggggg ccaccccctc aggcccccac
      601 cccacactga ctcatctccc catcataccc ggacctctcc aagtccagaa ggaaggatgg
      661 agccgagtga ccaacctcaa acccccaagt caatgcaaga agctgtcagg accgttggga
      721 gcagagatcc aggtcccgag gagattgaac ggggatcaca ccccaccctg tatttatcag
      781 aggaaaagca aagattaaat ccccaagctg taaatgtg
//
LOCUS       XM_032614076             748 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgi transport 1A (GOLT1A), transcript
            variant X3, mRNA.
ACCESSION   XM_032614076
VERSION     XM_032614076.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..748
                     /gene="GOLT1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744391"
     CDS             124..447
                     /gene="GOLT1A"
                     /codon_start=1
                     /product="vesicle transport protein GOT1A isoform X3"
                     /protein_id="XP_032469967.1"
                     /db_xref="GeneID:116744391"
                     /translation="MLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFSFFFQRHKLKGTS
                     FFLGGVVIVLLRWPLLGMFLETYGFFNLFKGFFSVAFDFLGNTSNIPFLSMLFRRLQG
                     TSSMV"
     misc_feature    124..375
                     /gene="GOLT1A"
                     /note="Got1/Sft2-like family; Region: Got1; cl02130"
                     /db_xref="CDD:470475"
ORIGIN      
        1 ggaagagggc agggaggtag tcccaaggtc caggagaagt ggtgaaaact gtggctctct
       61 aagtttcatt tggagattgg tgtgggcacc accggcttcg gcatcttctt tatcctcttt
      121 ggaatgctcc tgtactttga ttcggtgctc ctggccttcg gaaacctgct gttcctgact
      181 ggcctctccc tcatcatcgg cctgaggaag acgttttcct tcttcttcca gaggcacaag
      241 ctcaagggga ccagcttctt cctggggggc gtggtcatcg tgcttctgcg ctggcccctc
      301 ctgggcatgt tcctggaaac ctatggcttc tttaacctct tcaagggctt tttctctgtc
      361 gcctttgact tcttgggcaa tacctccaac atccccttcc tgagcatgct gttccggagg
      421 cttcaaggca ccagctcaat ggtctgaaca gcagagataa gctgcttgaa cttgcatcat
      481 tggttgaggg ggctggaaag gaaatggggg ccaccccctc aggcccccac cccacactga
      541 ctcatctccc catcataccc ggacctctcc aagtccagaa ggaaggatgg agccgagtga
      601 ccaacctcaa acccccaagt caatgcaaga agctgtcagg accgttggga gcagagatcc
      661 aggtcccgag gagattgaac ggggatcaca ccccaccctg tatttatcag aggaaaagca
      721 aagattaaat ccccaagctg taaatgtg
//
LOCUS       XM_032614087            3112 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immunoglobulin like domain containing
            receptor 2 (ILDR2), transcript variant X1, mRNA.
ACCESSION   XM_032614087
VERSION     XM_032614087.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3112
                     /gene="ILDR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744401"
     CDS             355..2217
                     /gene="ILDR2"
                     /codon_start=1
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X1"
                     /protein_id="XP_032469978.1"
                     /db_xref="GeneID:116744401"
                     /translation="MDRGLLAWVALFWLTAIAGGLQVTVPDKKKVAMLFQPTVLRCHF
                     STSSHQPAVVQWKFKSYCQDRMGESLGMSSPRAQSLSKRNLEWDPYLDCLDSRRTVRV
                     VASKQGSTVTLGDFYRGREITIVHDADLQIGKLMWGDSGLYYCIITTPDDLEGKNEDS
                     VELLVLEWVFVGLVTLGVFLFFVLVGICWCQCCPHSCCCYIRCPCCPDSCCCPQALYE
                     AGKAAKAGYPPSVSGVPGPYSIPSVPLGGAPASGVLMDKPHPPPLAPSDSTGGSHSVR
                     KGYRIQADKERDSMKVLYYVEKELAQFDPARRMRGRYNNTISELSSLHEEDSSFRQSY
                     HQMRSKQFPVSGDLESNPDYWSGVMRGSSGTGRGPSAMEYNKEDLESFRHSQQRSKSE
                     MLSRKNFATGVPAVSMDELAAFADSYGPRSRRADVNNHEARGGSRFERSEARAHGGFY
                     QDGSLEEYYGQRSRSREPLTDADRGWSYSPPRRRPPDDAHLPRLVSRTPGAAPKYDHS
                     FRGAGVERQALPEGASRGGSLETPSKLSAQLGPRSASYYAWSPPSTYKEGTPQGEEED
                     APDDALPPYSERELSRGPSYRGRDLPYHSNSEKRRKKEPAKKTSDFPTRMSLVV"
     misc_feature    <703..852
                     /gene="ILDR2"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    853..>933
                     /gene="ILDR2"
                     /note="Lipolysis stimulated receptor (LSR); Region: LSR;
                     pfam05624"
                     /db_xref="CDD:428550"
ORIGIN      
        1 ccccggggcg gctggcggcg gggccaggag ccggcggctg agcttccccg cgcggcgcgc
       61 tctgtggccg gaaggcgctc ggtgggccga gctgcctggg cgtgcgggtg cgccagcccg
      121 cggggaaggc gcagccgagc gccgcgcgga ccccgggagc ccgcggcagc gcgcgtgccg
      181 ccggcggcgc ggtcagcccg gggccccgcc tgcgcggccc gggcggcggc gctcagggac
      241 gccgggggtc cgctcgcgcc cgccgtcgcc tccgccactc ggttacctcg atcctcccgt
      301 ctctgtcgct tcccacttcc ttcactcctt aatctggatg ggaagttggg gaaaatggac
      361 aggggcttgc tggcgtgggt tgctctcttc tggctaacag ccatagctgg aggccttcag
      421 gtcacagtgc ccgacaagaa gaaggtggcc atgctcttcc agcccactgt gcttcgctgc
      481 cacttctcca cgtcttccca tcagcctgca gtcgtgcagt ggaaattcaa gtcttactgc
      541 caggatcgca tgggggaatc cttgggcatg tcttctcccc gggcccaatc tctcagcaaa
      601 agaaacctgg aatgggaccc ctacttggat tgtttagaca gtaggaggac tgttcgagtg
      661 gtagcttcca aacagggctc aaccgtgacc ctgggagatt tctacagggg cagagagatc
      721 acaattgttc atgatgcaga tcttcaaatt ggaaaactca tgtggggaga cagcggactc
      781 tattactgta tcatcaccac ccctgatgac ctggagggca agaacgagga ctcggtggaa
      841 ctgctggtgt tggagtgggt gtttgttggc ctggtgaccc tgggagtctt cctcttcttc
      901 gtcctggtgg ggatctgctg gtgccagtgc tgtcctcaca gctgctgttg ctacatccgc
      961 tgcccatgtt gcccagattc ctgctgctgc ccgcaggcct tgtatgaagc agggaaagca
     1021 gcaaaggccg ggtaccctcc ctctgtctcc ggtgtccccg gcccttactc catcccctct
     1081 gtccccttgg gaggagcccc cgcatctggc gtgctgatgg acaagccgca tccacctccc
     1141 ctggcaccaa gtgactccac tggaggaagc cacagtgttc gcaaaggtta ccggatccaa
     1201 gctgacaaag agagagactc catgaaggtc ctatactatg tcgagaagga gctggctcag
     1261 tttgatccag ccagaaggat gagaggcaga tataacaaca ccatctcgga actcagctcc
     1321 ctgcatgagg aagacagcag tttccgccag tcttaccatc agatgcgaag caaacagttc
     1381 cctgtgtctg gggacttgga aagcaatcct gactactggt caggtgtcat gcgaggcagc
     1441 agcgggacag gccgggggcc ctcggccatg gagtataaca aagaggatct ggagagcttc
     1501 aggcacagcc agcagcgctc caaatccgag atgctgtcgc ggaagaactt cgccaccggg
     1561 gtaccggccg tctccatgga cgagctggcg gccttcgctg actcctacgg cccgcggtcc
     1621 cgcagggcgg acgtcaacaa ccacgaggcc cggggcggga gccgcttcga gcgctcagag
     1681 gcgcgggcgc acgggggctt ctaccaggac ggctcgctgg aagagtacta cggacagcgg
     1741 agccgcagcc gggagcccct gaccgacgcg gaccgcggct ggtcctacag ccccccgcgc
     1801 cggcggccgc ccgacgacgc acacctgccc cgcctggtaa gccgcacgcc gggcgccgcc
     1861 cccaagtacg accactcgtt ccggggcgcc ggggtggagc ggcaggcgct gcctgagggc
     1921 gccagccgcg gcggcagcct cgagacaccg tccaagctga gcgcgcagct cggcccgcgc
     1981 agcgcctcct actacgcctg gtcgccgccg tccacctaca aggagggaac gccgcagggc
     2041 gaagaggagg acgcgcccga cgacgcgctg cctccctaca gcgagcgcga gctcagccgg
     2101 ggcccgtcct accgcggccg tgaccttccc taccacagca actcggagaa gaggaggaag
     2161 aaggaacccg ccaagaagac gagtgacttt ccaaccagga tgtcccttgt ggtctgatgt
     2221 ttgttttcaa gacaactctc tggatgacta gaaatcagaa gcagaaaacg ggaacaagac
     2281 acaaatccaa gaagcagcag gcccgggacc ttctctggcc accaccttgg aagatttgct
     2341 gatctttgct ttggcaaggg atggggggca gcctttcagg gaggctgatt gcaaacctca
     2401 gtgcccatct aactagtctg agaaacttat caagaaaaca actacgtgtg agcacattcc
     2461 cacacatgga gtttctcacc cacagagttc atcctgccca atctccttcc ttagccaaac
     2521 caggattcct tttctaattc taaaagggag ttagctctgg actgctaact tccagataat
     2581 gcctatgcct acagtctgct tttctatacc tcctgtgctg tgcttaggga cagaattgat
     2641 tactactatt agaaggaatt cactgacagc ggaagataac ttcagacaaa atataccttt
     2701 tagccccatt acctcccagt cactagtcaa tgactgttgt tacactgaaa tcaggcccgt
     2761 ggtgagctca gtgacagtga cctgtgggac aatcacagaa atggcttcag tgtactcttc
     2821 tgaatgacag ttcttgagtg gctggaacaa agcaagagct gtcgaagtgg tatttcttct
     2881 tccatcctga gaacataaac tgctttttct cttttggcac agcaacgtct gagtcttgga
     2941 catcaagggc tctgcctgtc ctctcctctc ctggactctc cacaggtttt ggtgccacac
     3001 acagagccct gcctccctct gcactctgat taggttgtca tcaggtgcct tttgataaat
     3061 gattaaaata tacacatgag ggcttccctg gtggcacagt ggttgagagt cc
//
LOCUS       XM_032614096            2935 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immunoglobulin like domain containing
            receptor 2 (ILDR2), transcript variant X2, mRNA.
ACCESSION   XM_032614096
VERSION     XM_032614096.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2935
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2935
                     /gene="ILDR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744401"
     CDS             355..2040
                     /gene="ILDR2"
                     /codon_start=1
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X2"
                     /protein_id="XP_032469987.1"
                     /db_xref="GeneID:116744401"
                     /translation="MDRGLLAWVALFWLTAIAGGLQVTVPDKKKVAMLFQPTVLRCHF
                     STSSHQPAVVQWKFKSYCQDRMGESLGMSSPRAQSLSKRNLEWDPYLDCLDSRRTVRV
                     VASKQGSTVTLGDFYRGREITIVHDADLQIGKLMWGDSGLYYCIITTPDDLEGKNEDS
                     VELLVLEWVFVGLVTLGVFLFFVLVGICWCQCCPHSCCCYIRCPCCPDSCCCPQAFRK
                     GYRIQADKERDSMKVLYYVEKELAQFDPARRMRGRYNNTISELSSLHEEDSSFRQSYH
                     QMRSKQFPVSGDLESNPDYWSGVMRGSSGTGRGPSAMEYNKEDLESFRHSQQRSKSEM
                     LSRKNFATGVPAVSMDELAAFADSYGPRSRRADVNNHEARGGSRFERSEARAHGGFYQ
                     DGSLEEYYGQRSRSREPLTDADRGWSYSPPRRRPPDDAHLPRLVSRTPGAAPKYDHSF
                     RGAGVERQALPEGASRGGSLETPSKLSAQLGPRSASYYAWSPPSTYKEGTPQGEEEDA
                     PDDALPPYSERELSRGPSYRGRDLPYHSNSEKRRKKEPAKKTSDFPTRMSLVV"
     misc_feature    <703..852
                     /gene="ILDR2"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    853..>933
                     /gene="ILDR2"
                     /note="Lipolysis stimulated receptor (LSR); Region: LSR;
                     pfam05624"
                     /db_xref="CDD:428550"
ORIGIN      
        1 ccccggggcg gctggcggcg gggccaggag ccggcggctg agcttccccg cgcggcgcgc
       61 tctgtggccg gaaggcgctc ggtgggccga gctgcctggg cgtgcgggtg cgccagcccg
      121 cggggaaggc gcagccgagc gccgcgcgga ccccgggagc ccgcggcagc gcgcgtgccg
      181 ccggcggcgc ggtcagcccg gggccccgcc tgcgcggccc gggcggcggc gctcagggac
      241 gccgggggtc cgctcgcgcc cgccgtcgcc tccgccactc ggttacctcg atcctcccgt
      301 ctctgtcgct tcccacttcc ttcactcctt aatctggatg ggaagttggg gaaaatggac
      361 aggggcttgc tggcgtgggt tgctctcttc tggctaacag ccatagctgg aggccttcag
      421 gtcacagtgc ccgacaagaa gaaggtggcc atgctcttcc agcccactgt gcttcgctgc
      481 cacttctcca cgtcttccca tcagcctgca gtcgtgcagt ggaaattcaa gtcttactgc
      541 caggatcgca tgggggaatc cttgggcatg tcttctcccc gggcccaatc tctcagcaaa
      601 agaaacctgg aatgggaccc ctacttggat tgtttagaca gtaggaggac tgttcgagtg
      661 gtagcttcca aacagggctc aaccgtgacc ctgggagatt tctacagggg cagagagatc
      721 acaattgttc atgatgcaga tcttcaaatt ggaaaactca tgtggggaga cagcggactc
      781 tattactgta tcatcaccac ccctgatgac ctggagggca agaacgagga ctcggtggaa
      841 ctgctggtgt tggagtgggt gtttgttggc ctggtgaccc tgggagtctt cctcttcttc
      901 gtcctggtgg ggatctgctg gtgccagtgc tgtcctcaca gctgctgttg ctacatccgc
      961 tgcccatgtt gcccagattc ctgctgctgc ccgcaggcct ttcgcaaagg ttaccggatc
     1021 caagctgaca aagagagaga ctccatgaag gtcctatact atgtcgagaa ggagctggct
     1081 cagtttgatc cagccagaag gatgagaggc agatataaca acaccatctc ggaactcagc
     1141 tccctgcatg aggaagacag cagtttccgc cagtcttacc atcagatgcg aagcaaacag
     1201 ttccctgtgt ctggggactt ggaaagcaat cctgactact ggtcaggtgt catgcgaggc
     1261 agcagcggga caggccgggg gccctcggcc atggagtata acaaagagga tctggagagc
     1321 ttcaggcaca gccagcagcg ctccaaatcc gagatgctgt cgcggaagaa cttcgccacc
     1381 ggggtaccgg ccgtctccat ggacgagctg gcggccttcg ctgactccta cggcccgcgg
     1441 tcccgcaggg cggacgtcaa caaccacgag gcccggggcg ggagccgctt cgagcgctca
     1501 gaggcgcggg cgcacggggg cttctaccag gacggctcgc tggaagagta ctacggacag
     1561 cggagccgca gccgggagcc cctgaccgac gcggaccgcg gctggtccta cagccccccg
     1621 cgccggcggc cgcccgacga cgcacacctg ccccgcctgg taagccgcac gccgggcgcc
     1681 gcccccaagt acgaccactc gttccggggc gccggggtgg agcggcaggc gctgcctgag
     1741 ggcgccagcc gcggcggcag cctcgagaca ccgtccaagc tgagcgcgca gctcggcccg
     1801 cgcagcgcct cctactacgc ctggtcgccg ccgtccacct acaaggaggg aacgccgcag
     1861 ggcgaagagg aggacgcgcc cgacgacgcg ctgcctccct acagcgagcg cgagctcagc
     1921 cggggcccgt cctaccgcgg ccgtgacctt ccctaccaca gcaactcgga gaagaggagg
     1981 aagaaggaac ccgccaagaa gacgagtgac tttccaacca ggatgtccct tgtggtctga
     2041 tgtttgtttt caagacaact ctctggatga ctagaaatca gaagcagaaa acgggaacaa
     2101 gacacaaatc caagaagcag caggcccggg accttctctg gccaccacct tggaagattt
     2161 gctgatcttt gctttggcaa gggatggggg gcagcctttc agggaggctg attgcaaacc
     2221 tcagtgccca tctaactagt ctgagaaact tatcaagaaa acaactacgt gtgagcacat
     2281 tcccacacat ggagtttctc acccacagag ttcatcctgc ccaatctcct tccttagcca
     2341 aaccaggatt ccttttctaa ttctaaaagg gagttagctc tggactgcta acttccagat
     2401 aatgcctatg cctacagtct gcttttctat acctcctgtg ctgtgcttag ggacagaatt
     2461 gattactact attagaagga attcactgac agcggaagat aacttcagac aaaatatacc
     2521 ttttagcccc attacctccc agtcactagt caatgactgt tgttacactg aaatcaggcc
     2581 cgtggtgagc tcagtgacag tgacctgtgg gacaatcaca gaaatggctt cagtgtactc
     2641 ttctgaatga cagttcttga gtggctggaa caaagcaaga gctgtcgaag tggtatttct
     2701 tcttccatcc tgagaacata aactgctttt tctcttttgg cacagcaacg tctgagtctt
     2761 ggacatcaag ggctctgcct gtcctctcct ctcctggact ctccacaggt tttggtgcca
     2821 cacacagagc cctgcctccc tctgcactct gattaggttg tcatcaggtg ccttttgata
     2881 aatgattaaa atatacacat gagggcttcc ctggtggcac agtggttgag agtcc
//
LOCUS       XM_032614106            2788 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immunoglobulin like domain containing
            receptor 2 (ILDR2), transcript variant X3, mRNA.
ACCESSION   XM_032614106
VERSION     XM_032614106.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2788
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2788
                     /gene="ILDR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744401"
     CDS             355..1893
                     /gene="ILDR2"
                     /codon_start=1
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X3"
                     /protein_id="XP_032469997.1"
                     /db_xref="GeneID:116744401"
                     /translation="MDRGLLAWVALFWLTAIAGGLQVTVPDKKKVAMLFQPTVLRCHF
                     STSSHQPAVVQWKFKSYCQDRMGESLGMSSPRAQSLSKRNLEWDPYLDCLDSRRTVRV
                     VASKQGSTVTLGDFYRGREITIVHDADLQIGKLMWGDSGLYYCIITTPDDLEGKNEDS
                     VELLVLVRKGYRIQADKERDSMKVLYYVEKELAQFDPARRMRGRYNNTISELSSLHEE
                     DSSFRQSYHQMRSKQFPVSGDLESNPDYWSGVMRGSSGTGRGPSAMEYNKEDLESFRH
                     SQQRSKSEMLSRKNFATGVPAVSMDELAAFADSYGPRSRRADVNNHEARGGSRFERSE
                     ARAHGGFYQDGSLEEYYGQRSRSREPLTDADRGWSYSPPRRRPPDDAHLPRLVSRTPG
                     AAPKYDHSFRGAGVERQALPEGASRGGSLETPSKLSAQLGPRSASYYAWSPPSTYKEG
                     TPQGEEEDAPDDALPPYSERELSRGPSYRGRDLPYHSNSEKRRKKEPAKKTSDFPTRM
                     SLVV"
     misc_feature    <703..852
                     /gene="ILDR2"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
ORIGIN      
        1 ccccggggcg gctggcggcg gggccaggag ccggcggctg agcttccccg cgcggcgcgc
       61 tctgtggccg gaaggcgctc ggtgggccga gctgcctggg cgtgcgggtg cgccagcccg
      121 cggggaaggc gcagccgagc gccgcgcgga ccccgggagc ccgcggcagc gcgcgtgccg
      181 ccggcggcgc ggtcagcccg gggccccgcc tgcgcggccc gggcggcggc gctcagggac
      241 gccgggggtc cgctcgcgcc cgccgtcgcc tccgccactc ggttacctcg atcctcccgt
      301 ctctgtcgct tcccacttcc ttcactcctt aatctggatg ggaagttggg gaaaatggac
      361 aggggcttgc tggcgtgggt tgctctcttc tggctaacag ccatagctgg aggccttcag
      421 gtcacagtgc ccgacaagaa gaaggtggcc atgctcttcc agcccactgt gcttcgctgc
      481 cacttctcca cgtcttccca tcagcctgca gtcgtgcagt ggaaattcaa gtcttactgc
      541 caggatcgca tgggggaatc cttgggcatg tcttctcccc gggcccaatc tctcagcaaa
      601 agaaacctgg aatgggaccc ctacttggat tgtttagaca gtaggaggac tgttcgagtg
      661 gtagcttcca aacagggctc aaccgtgacc ctgggagatt tctacagggg cagagagatc
      721 acaattgttc atgatgcaga tcttcaaatt ggaaaactca tgtggggaga cagcggactc
      781 tattactgta tcatcaccac ccctgatgac ctggagggca agaacgagga ctcggtggaa
      841 ctgctggtgt tggttcgcaa aggttaccgg atccaagctg acaaagagag agactccatg
      901 aaggtcctat actatgtcga gaaggagctg gctcagtttg atccagccag aaggatgaga
      961 ggcagatata acaacaccat ctcggaactc agctccctgc atgaggaaga cagcagtttc
     1021 cgccagtctt accatcagat gcgaagcaaa cagttccctg tgtctgggga cttggaaagc
     1081 aatcctgact actggtcagg tgtcatgcga ggcagcagcg ggacaggccg ggggccctcg
     1141 gccatggagt ataacaaaga ggatctggag agcttcaggc acagccagca gcgctccaaa
     1201 tccgagatgc tgtcgcggaa gaacttcgcc accggggtac cggccgtctc catggacgag
     1261 ctggcggcct tcgctgactc ctacggcccg cggtcccgca gggcggacgt caacaaccac
     1321 gaggcccggg gcgggagccg cttcgagcgc tcagaggcgc gggcgcacgg gggcttctac
     1381 caggacggct cgctggaaga gtactacgga cagcggagcc gcagccggga gcccctgacc
     1441 gacgcggacc gcggctggtc ctacagcccc ccgcgccggc ggccgcccga cgacgcacac
     1501 ctgccccgcc tggtaagccg cacgccgggc gccgccccca agtacgacca ctcgttccgg
     1561 ggcgccgggg tggagcggca ggcgctgcct gagggcgcca gccgcggcgg cagcctcgag
     1621 acaccgtcca agctgagcgc gcagctcggc ccgcgcagcg cctcctacta cgcctggtcg
     1681 ccgccgtcca cctacaagga gggaacgccg cagggcgaag aggaggacgc gcccgacgac
     1741 gcgctgcctc cctacagcga gcgcgagctc agccggggcc cgtcctaccg cggccgtgac
     1801 cttccctacc acagcaactc ggagaagagg aggaagaagg aacccgccaa gaagacgagt
     1861 gactttccaa ccaggatgtc ccttgtggtc tgatgtttgt tttcaagaca actctctgga
     1921 tgactagaaa tcagaagcag aaaacgggaa caagacacaa atccaagaag cagcaggccc
     1981 gggaccttct ctggccacca ccttggaaga tttgctgatc tttgctttgg caagggatgg
     2041 ggggcagcct ttcagggagg ctgattgcaa acctcagtgc ccatctaact agtctgagaa
     2101 acttatcaag aaaacaacta cgtgtgagca cattcccaca catggagttt ctcacccaca
     2161 gagttcatcc tgcccaatct ccttccttag ccaaaccagg attccttttc taattctaaa
     2221 agggagttag ctctggactg ctaacttcca gataatgcct atgcctacag tctgcttttc
     2281 tatacctcct gtgctgtgct tagggacaga attgattact actattagaa ggaattcact
     2341 gacagcggaa gataacttca gacaaaatat accttttagc cccattacct cccagtcact
     2401 agtcaatgac tgttgttaca ctgaaatcag gcccgtggtg agctcagtga cagtgacctg
     2461 tgggacaatc acagaaatgg cttcagtgta ctcttctgaa tgacagttct tgagtggctg
     2521 gaacaaagca agagctgtcg aagtggtatt tcttcttcca tcctgagaac ataaactgct
     2581 ttttctcttt tggcacagca acgtctgagt cttggacatc aagggctctg cctgtcctct
     2641 cctctcctgg actctccaca ggttttggtg ccacacacag agccctgcct ccctctgcac
     2701 tctgattagg ttgtcatcag gtgccttttg ataaatgatt aaaatataca catgagggct
     2761 tccctggtgg cacagtggtt gagagtcc
//
LOCUS       XM_032614116            3169 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus immunoglobulin like domain containing
            receptor 2 (ILDR2), transcript variant X4, mRNA.
ACCESSION   XM_032614116
VERSION     XM_032614116.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3169
                     /gene="ILDR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744401"
     CDS             355..2274
                     /gene="ILDR2"
                     /codon_start=1
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X4"
                     /protein_id="XP_032470007.1"
                     /db_xref="GeneID:116744401"
                     /translation="MDRGLLAWVALFWLTAIAGGLQVTVPDKKKVAMLFQPTVLRCHF
                     STSSHQPAVVQWKFKSYCQDRMGESLGMSSPRAQSLSKRNLEWDPYLDCLDSRRTVRV
                     VASKQGSTVTLGDFYRGREITIVHDADLQIGKLMWGDSGLYYCIITTPDDLEGKNEDS
                     VELLVLGRTGLLADLLPSFAVEIMPEWVFVGLVTLGVFLFFVLVGICWCQCCPHSCCC
                     YIRCPCCPDSCCCPQALYEAGKAAKAGYPPSVSGVPGPYSIPSVPLGGAPASGVLMDK
                     PHPPPLAPSDSTGGSHSVRKGYRIQADKERDSMKVLYYVEKELAQFDPARRMRGRYNN
                     TISELSSLHEEDSSFRQSYHQMRSKQFPVSGDLESNPDYWSGVMRGSSGTGRGPSAME
                     YNKEDLESFRHSQQRSKSEMLSRKNFATGVPAVSMDELAAFADSYGPRSRRADVNNHE
                     ARGGSRFERSEARAHGGFYQDGSLEEYYGQRSRSREPLTDADRGWSYSPPRRRPPDDA
                     HLPRLVSRTPGAAPKYDHSFRGAGVERQALPEGASRGGSLETPSKLSAQLGPRSASYY
                     AWSPPSTYKEGTPQGEEEDAPDDALPPYSERELSRGPSYRGRDLPYHSNSEKRRKKEP
                     AKKTSDFPTRMSLVV"
     misc_feature    <703..852
                     /gene="ILDR2"
                     /note="Immunoglobulin V-set domain; Region: V-set;
                     pfam07686"
                     /db_xref="CDD:462230"
     misc_feature    910..>990
                     /gene="ILDR2"
                     /note="Lipolysis stimulated receptor (LSR); Region: LSR;
                     pfam05624"
                     /db_xref="CDD:428550"
ORIGIN      
        1 ccccggggcg gctggcggcg gggccaggag ccggcggctg agcttccccg cgcggcgcgc
       61 tctgtggccg gaaggcgctc ggtgggccga gctgcctggg cgtgcgggtg cgccagcccg
      121 cggggaaggc gcagccgagc gccgcgcgga ccccgggagc ccgcggcagc gcgcgtgccg
      181 ccggcggcgc ggtcagcccg gggccccgcc tgcgcggccc gggcggcggc gctcagggac
      241 gccgggggtc cgctcgcgcc cgccgtcgcc tccgccactc ggttacctcg atcctcccgt
      301 ctctgtcgct tcccacttcc ttcactcctt aatctggatg ggaagttggg gaaaatggac
      361 aggggcttgc tggcgtgggt tgctctcttc tggctaacag ccatagctgg aggccttcag
      421 gtcacagtgc ccgacaagaa gaaggtggcc atgctcttcc agcccactgt gcttcgctgc
      481 cacttctcca cgtcttccca tcagcctgca gtcgtgcagt ggaaattcaa gtcttactgc
      541 caggatcgca tgggggaatc cttgggcatg tcttctcccc gggcccaatc tctcagcaaa
      601 agaaacctgg aatgggaccc ctacttggat tgtttagaca gtaggaggac tgttcgagtg
      661 gtagcttcca aacagggctc aaccgtgacc ctgggagatt tctacagggg cagagagatc
      721 acaattgttc atgatgcaga tcttcaaatt ggaaaactca tgtggggaga cagcggactc
      781 tattactgta tcatcaccac ccctgatgac ctggagggca agaacgagga ctcggtggaa
      841 ctgctggtgt tgggcaggac agggctgctt gctgatctct tgcccagttt tgctgtggag
      901 attatgccag agtgggtgtt tgttggcctg gtgaccctgg gagtcttcct cttcttcgtc
      961 ctggtgggga tctgctggtg ccagtgctgt cctcacagct gctgttgcta catccgctgc
     1021 ccatgttgcc cagattcctg ctgctgcccg caggccttgt atgaagcagg gaaagcagca
     1081 aaggccgggt accctccctc tgtctccggt gtccccggcc cttactccat cccctctgtc
     1141 cccttgggag gagcccccgc atctggcgtg ctgatggaca agccgcatcc acctcccctg
     1201 gcaccaagtg actccactgg aggaagccac agtgttcgca aaggttaccg gatccaagct
     1261 gacaaagaga gagactccat gaaggtccta tactatgtcg agaaggagct ggctcagttt
     1321 gatccagcca gaaggatgag aggcagatat aacaacacca tctcggaact cagctccctg
     1381 catgaggaag acagcagttt ccgccagtct taccatcaga tgcgaagcaa acagttccct
     1441 gtgtctgggg acttggaaag caatcctgac tactggtcag gtgtcatgcg aggcagcagc
     1501 gggacaggcc gggggccctc ggccatggag tataacaaag aggatctgga gagcttcagg
     1561 cacagccagc agcgctccaa atccgagatg ctgtcgcgga agaacttcgc caccggggta
     1621 ccggccgtct ccatggacga gctggcggcc ttcgctgact cctacggccc gcggtcccgc
     1681 agggcggacg tcaacaacca cgaggcccgg ggcgggagcc gcttcgagcg ctcagaggcg
     1741 cgggcgcacg ggggcttcta ccaggacggc tcgctggaag agtactacgg acagcggagc
     1801 cgcagccggg agcccctgac cgacgcggac cgcggctggt cctacagccc cccgcgccgg
     1861 cggccgcccg acgacgcaca cctgccccgc ctggtaagcc gcacgccggg cgccgccccc
     1921 aagtacgacc actcgttccg gggcgccggg gtggagcggc aggcgctgcc tgagggcgcc
     1981 agccgcggcg gcagcctcga gacaccgtcc aagctgagcg cgcagctcgg cccgcgcagc
     2041 gcctcctact acgcctggtc gccgccgtcc acctacaagg agggaacgcc gcagggcgaa
     2101 gaggaggacg cgcccgacga cgcgctgcct ccctacagcg agcgcgagct cagccggggc
     2161 ccgtcctacc gcggccgtga ccttccctac cacagcaact cggagaagag gaggaagaag
     2221 gaacccgcca agaagacgag tgactttcca accaggatgt cccttgtggt ctgatgtttg
     2281 ttttcaagac aactctctgg atgactagaa atcagaagca gaaaacggga acaagacaca
     2341 aatccaagaa gcagcaggcc cgggaccttc tctggccacc accttggaag atttgctgat
     2401 ctttgctttg gcaagggatg gggggcagcc tttcagggag gctgattgca aacctcagtg
     2461 cccatctaac tagtctgaga aacttatcaa gaaaacaact acgtgtgagc acattcccac
     2521 acatggagtt tctcacccac agagttcatc ctgcccaatc tccttcctta gccaaaccag
     2581 gattcctttt ctaattctaa aagggagtta gctctggact gctaacttcc agataatgcc
     2641 tatgcctaca gtctgctttt ctatacctcc tgtgctgtgc ttagggacag aattgattac
     2701 tactattaga aggaattcac tgacagcgga agataacttc agacaaaata taccttttag
     2761 ccccattacc tcccagtcac tagtcaatga ctgttgttac actgaaatca ggcccgtggt
     2821 gagctcagtg acagtgacct gtgggacaat cacagaaatg gcttcagtgt actcttctga
     2881 atgacagttc ttgagtggct ggaacaaagc aagagctgtc gaagtggtat ttcttcttcc
     2941 atcctgagaa cataaactgc tttttctctt ttggcacagc aacgtctgag tcttggacat
     3001 caagggctct gcctgtcctc tcctctcctg gactctccac aggttttggt gccacacaca
     3061 gagccctgcc tccctctgca ctctgattag gttgtcatca ggtgcctttt gataaatgat
     3121 taaaatatac acatgagggc ttccctggtg gcacagtggt tgagagtcc
//
LOCUS       XM_032614130            1741 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus maelstrom spermatogenic transposon
            silencer (MAEL), transcript variant X1, mRNA.
ACCESSION   XM_032614130
VERSION     XM_032614130.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1741
                     /gene="MAEL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 Proteins, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744415"
     CDS             86..1390
                     /gene="MAEL"
                     /codon_start=1
                     /product="protein maelstrom homolog isoform X1"
                     /protein_id="XP_032470021.1"
                     /db_xref="GeneID:116744415"
                     /translation="MEKPRPLRHTWKGAAQEKIPELRRRGLPVAHVADAIPYCSADWA
                     LLREEEKKKYAEMAREWRAAQGKNSGPSEKQKPVSTPLRSPGMLVPKQNVSPLDMSGL
                     SLKSDQAVLGGIFYFLNIFSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFINP
                     GEIPRGFRFHCQAASDSSHKIPISNFESGHDQAMVLQNLYRFIHPNPGNWPPVYCKSD
                     DRARVNWCLKHMEKSSEIRQDLELLTVEDLVVGIYQQKFLKEPSKTWVRSFLDVAMWD
                     YSSNTRCKWHEDNDIVLCALAVCKKIAYCISNSLATLFGIQLTEAHVPLQDYEAGNSV
                     TPKMVVLDAGRYQKLRVQSPGFSHFSSSNQEQRSNTPTGDSPSGVKTSGQNSSVRGRG
                     ITRLLESISNSSSNIHKFCNCETSLSPYMSQKDESKSFSSLS"
     misc_feature    92..304
                     /gene="MAEL"
                     /note="high mobility group (HMG)-box domain superfamily;
                     Region: HMG-box_SF; cl00082"
                     /db_xref="CDD:469606"
     misc_feature    473..1057
                     /gene="MAEL"
                     /note="piRNA pathway germ-plasm component; Region:
                     Maelstrom; pfam13017"
                     /db_xref="CDD:404040"
ORIGIN      
        1 atttggagcg ctgctggctg cggggagagg aggcgctggt cagtccagcc gggagcaaag
       61 ttctccaata cagcaaacta aaacaatgga gaagcctaga cccctacgcc atacttggaa
      121 gggagctgcc caggagaaga tccccgaact acggcggaga ggcctgcccg tggctcacgt
      181 cgctgatgcc atcccctact gttccgctga ctgggcgctc ctgagggagg aggaaaagaa
      241 gaaatatgca gaaatggctc gagagtggag ggctgcccag ggaaaaaact ctgggccttc
      301 ggagaagcag aaacctgttt ccaccccact gaggagtccg ggcatgcttg taccaaagca
      361 gaatgtttca cccctggata tgtcaggctt gtctctaaaa agtgatcaag ctgtccttgg
      421 aggcattttt tattttttga acatttttag ccatggcgag ctacctcctc actgtgaaca
      481 gcgcttcctc ccttgtgaaa taggctgtgt taaatattct ctccaagaag gtattatggc
      541 agatttccac agctttataa atcctggtga aattccacga ggatttcggt ttcattgtca
      601 ggctgcaagt gattctagtc acaagattcc tatttcaaac tttgaatccg ggcatgacca
      661 agcaatggtg ttacaaaacc tttatagatt cattcatcca aatccaggga actggccacc
      721 tgtctactgc aagtctgatg atagagccag agtcaactgg tgtttgaagc atatggagaa
      781 gtcatcagaa atcaggcaag atctagaact tctcactgta gaggatcttg tagtagggat
      841 ctaccagcaa aaatttctca aggagccctc taagacctgg gttcggagct tcctagatgt
      901 ggccatgtgg gattattcta gcaacacaag gtgcaagtgg catgaagaca atgatattgt
      961 cctctgtgct ttagctgttt gcaagaaaat tgcatactgc atcagtaatt ctctggccac
     1021 tctctttgga atccagctca cagaggctca tgtaccactt caagattatg aggccggcaa
     1081 tagtgtgaca cccaaaatgg ttgtattgga tgcagggcgt taccagaagc taagggttca
     1141 gagtccagga ttctctcatt tcagctcttc taatcaggaa cagagatcaa acacacccac
     1201 tggtgactcc ccttctgggg tgaaaacatc tggccaaaac agcagtgttc ggggaagagg
     1261 gattacccgc ttactagaga gcatctccaa ttcctccagc aatatccaca aattctgcaa
     1321 ctgtgagact tcactctcac cttacatgtc ccaaaaagat gaatccaaat ctttctcttc
     1381 cttatcttaa tgatgatact tttttcaatt tctggaagaa caacggaccc gacttccgtt
     1441 ctgactacag tcatattaaa cagaccacat caacaataaa tgtcactact ctaaaaacta
     1501 cttaatttgt aaggaaattc tgtttcatag attaaaaata attgtggttg gagaagatct
     1561 tggcattttt gcttttttct tgagggcttg ttctactttc tgactgtatt atgggaatgc
     1621 cattaaagtt ttgagtccta taagaataaa actagctttt acagagttgt gcttttggga
     1681 atattatatt ttggtatctt ttctctacca taaaagtatt aagtatctgt tatgaaaggt
     1741 t
//
LOCUS       XM_032614141            1606 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus maelstrom spermatogenic transposon
            silencer (MAEL), transcript variant X2, mRNA.
ACCESSION   XM_032614141
VERSION     XM_032614141.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1606
                     /gene="MAEL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116744415"
     CDS             86..1387
                     /gene="MAEL"
                     /codon_start=1
                     /product="protein maelstrom homolog isoform X2"
                     /protein_id="XP_032470032.1"
                     /db_xref="GeneID:116744415"
                     /translation="MEKPRPLRHTWKGAAQEKIPELRRRGLPVAHVADAIPYCSADWA
                     LLREEEKKKYAEMAREWRAAQGKNSGPSEKQKPVSTPLRSPGMLVPKQNVSPLDMSGL
                     SLKSDQAVLGGIFYFLNIFSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFINP
                     GEIPRGFRFHCQAASDSSHKIPISNFESGHDQAMVLQNLYRFIHPNPGNWPPVYCKSD
                     DRARVNWCLKHMEKSSEIRQDLELLTVEDLVVGIYQQKFLKEPSKTWVRSFLDVAMWD
                     YSSNTRCKWHEDNDIVLCALAVCKKIAYCISNSLATLFGIQLTEAHVPLQDYEAGNSV
                     TPKMVVLDAGRYQLRVQSPGFSHFSSSNQEQRSNTPTGDSPSGVKTSGQNSSVRGRGI
                     TRLLESISNSSSNIHKFCNCETSLSPYMSQKDESKSFSSLS"
     misc_feature    92..304
                     /gene="MAEL"
                     /note="high mobility group (HMG)-box domain superfamily;
                     Region: HMG-box_SF; cl00082"
                     /db_xref="CDD:469606"
     misc_feature    473..1057
                     /gene="MAEL"
                     /note="piRNA pathway germ-plasm component; Region:
                     Maelstrom; pfam13017"
                     /db_xref="CDD:404040"
ORIGIN      
        1 atttggagcg ctgctggctg cggggagagg aggcgctggt cagtccagcc gggagcaaag
       61 ttctccaata cagcaaacta aaacaatgga gaagcctaga cccctacgcc atacttggaa
      121 gggagctgcc caggagaaga tccccgaact acggcggaga ggcctgcccg tggctcacgt
      181 cgctgatgcc atcccctact gttccgctga ctgggcgctc ctgagggagg aggaaaagaa
      241 gaaatatgca gaaatggctc gagagtggag ggctgcccag ggaaaaaact ctgggccttc
      301 ggagaagcag aaacctgttt ccaccccact gaggagtccg ggcatgcttg taccaaagca
      361 gaatgtttca cccctggata tgtcaggctt gtctctaaaa agtgatcaag ctgtccttgg
      421 aggcattttt tattttttga acatttttag ccatggcgag ctacctcctc actgtgaaca
      481 gcgcttcctc ccttgtgaaa taggctgtgt taaatattct ctccaagaag gtattatggc
      541 agatttccac agctttataa atcctggtga aattccacga ggatttcggt ttcattgtca
      601 ggctgcaagt gattctagtc acaagattcc tatttcaaac tttgaatccg ggcatgacca
      661 agcaatggtg ttacaaaacc tttatagatt cattcatcca aatccaggga actggccacc
      721 tgtctactgc aagtctgatg atagagccag agtcaactgg tgtttgaagc atatggagaa
      781 gtcatcagaa atcaggcaag atctagaact tctcactgta gaggatcttg tagtagggat
      841 ctaccagcaa aaatttctca aggagccctc taagacctgg gttcggagct tcctagatgt
      901 ggccatgtgg gattattcta gcaacacaag gtgcaagtgg catgaagaca atgatattgt
      961 cctctgtgct ttagctgttt gcaagaaaat tgcatactgc atcagtaatt ctctggccac
     1021 tctctttgga atccagctca cagaggctca tgtaccactt caagattatg aggccggcaa
     1081 tagtgtgaca cccaaaatgg ttgtattgga tgcagggcgt taccagctaa gggttcagag
     1141 tccaggattc tctcatttca gctcttctaa tcaggaacag agatcaaaca cacccactgg
     1201 tgactcccct tctggggtga aaacatctgg ccaaaacagc agtgttcggg gaagagggat
     1261 tacccgctta ctagagagca tctccaattc ctccagcaat atccacaaat tctgcaactg
     1321 tgagacttca ctctcacctt acatgtccca aaaagatgaa tccaaatctt tctcttcctt
     1381 atcttaatga tgatactttt ttcaatttct ggaagaacaa cggacccgac ttccgttctg
     1441 actacagtca tattaaacag accacatcaa caataaatgt cactactcta aaaactactt
     1501 aatttgtaag gaaattctgt ttcatagatt aaaaataatt gtggttggag aagatcttgg
     1561 catttttgct tttttcttga gggcttgttc tactttctga ctgtat
//
LOCUS       XM_032614152            1687 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus maelstrom spermatogenic transposon
            silencer (MAEL), transcript variant X3, mRNA.
ACCESSION   XM_032614152
VERSION     XM_032614152.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1687
                     /gene="MAEL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 Proteins, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744415"
     CDS             71..1336
                     /gene="MAEL"
                     /codon_start=1
                     /product="protein maelstrom homolog isoform X3"
                     /protein_id="XP_032470043.1"
                     /db_xref="GeneID:116744415"
                     /translation="MAEEKIPELRRRGLPVAHVADAIPYCSADWALLREEEKKKYAEM
                     AREWRAAQGKNSGPSEKQKPVSTPLRSPGMLVPKQNVSPLDMSGLSLKSDQAVLGGIF
                     YFLNIFSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFINPGEIPRGFRFHCQA
                     ASDSSHKIPISNFESGHDQAMVLQNLYRFIHPNPGNWPPVYCKSDDRARVNWCLKHME
                     KSSEIRQDLELLTVEDLVVGIYQQKFLKEPSKTWVRSFLDVAMWDYSSNTRCKWHEDN
                     DIVLCALAVCKKIAYCISNSLATLFGIQLTEAHVPLQDYEAGNSVTPKMVVLDAGRYQ
                     KLRVQSPGFSHFSSSNQEQRSNTPTGDSPSGVKTSGQNSSVRGRGITRLLESISNSSS
                     NIHKFCNCETSLSPYMSQKDESKSFSSLS"
     misc_feature    74..250
                     /gene="MAEL"
                     /note="high mobility group (HMG)-box domain superfamily;
                     Region: HMG-box_SF; cl00082"
                     /db_xref="CDD:469606"
     misc_feature    419..1003
                     /gene="MAEL"
                     /note="piRNA pathway germ-plasm component; Region:
                     Maelstrom; pfam13017"
                     /db_xref="CDD:404040"
ORIGIN      
        1 agcagagtca gcggagaatc agttttgctg ctgaggtggg cagctggcgt ccagtgttca
       61 caggccagcc atggcagagg agaagatccc cgaactacgg cggagaggcc tgcccgtggc
      121 tcacgtcgct gatgccatcc cctactgttc cgctgactgg gcgctcctga gggaggagga
      181 aaagaagaaa tatgcagaaa tggctcgaga gtggagggct gcccagggaa aaaactctgg
      241 gccttcggag aagcagaaac ctgtttccac cccactgagg agtccgggca tgcttgtacc
      301 aaagcagaat gtttcacccc tggatatgtc aggcttgtct ctaaaaagtg atcaagctgt
      361 ccttggaggc attttttatt ttttgaacat ttttagccat ggcgagctac ctcctcactg
      421 tgaacagcgc ttcctccctt gtgaaatagg ctgtgttaaa tattctctcc aagaaggtat
      481 tatggcagat ttccacagct ttataaatcc tggtgaaatt ccacgaggat ttcggtttca
      541 ttgtcaggct gcaagtgatt ctagtcacaa gattcctatt tcaaactttg aatccgggca
      601 tgaccaagca atggtgttac aaaaccttta tagattcatt catccaaatc cagggaactg
      661 gccacctgtc tactgcaagt ctgatgatag agccagagtc aactggtgtt tgaagcatat
      721 ggagaagtca tcagaaatca ggcaagatct agaacttctc actgtagagg atcttgtagt
      781 agggatctac cagcaaaaat ttctcaagga gccctctaag acctgggttc ggagcttcct
      841 agatgtggcc atgtgggatt attctagcaa cacaaggtgc aagtggcatg aagacaatga
      901 tattgtcctc tgtgctttag ctgtttgcaa gaaaattgca tactgcatca gtaattctct
      961 ggccactctc tttggaatcc agctcacaga ggctcatgta ccacttcaag attatgaggc
     1021 cggcaatagt gtgacaccca aaatggttgt attggatgca gggcgttacc agaagctaag
     1081 ggttcagagt ccaggattct ctcatttcag ctcttctaat caggaacaga gatcaaacac
     1141 acccactggt gactcccctt ctggggtgaa aacatctggc caaaacagca gtgttcgggg
     1201 aagagggatt acccgcttac tagagagcat ctccaattcc tccagcaata tccacaaatt
     1261 ctgcaactgt gagacttcac tctcacctta catgtcccaa aaagatgaat ccaaatcttt
     1321 ctcttcctta tcttaatgat gatacttttt tcaatttctg gaagaacaac ggacccgact
     1381 tccgttctga ctacagtcat attaaacaga ccacatcaac aataaatgtc actactctaa
     1441 aaactactta atttgtaagg aaattctgtt tcatagatta aaaataattg tggttggaga
     1501 agatcttggc atttttgctt ttttcttgag ggcttgttct actttctgac tgtattatgg
     1561 gaatgccatt aaagttttga gtcctataag aataaaacta gcttttacag agttgtgctt
     1621 ttgggaatat tatattttgg tatcttttct ctaccataaa agtattaagt atctgttatg
     1681 aaaggtt
//
LOCUS       XM_032614162            1628 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus maelstrom spermatogenic transposon
            silencer (MAEL), transcript variant X4, mRNA.
ACCESSION   XM_032614162
VERSION     XM_032614162.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1628
                     /gene="MAEL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 Proteins, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744415"
     CDS             141..1277
                     /gene="MAEL"
                     /codon_start=1
                     /product="protein maelstrom homolog isoform X4"
                     /protein_id="XP_032470053.1"
                     /db_xref="GeneID:116744415"
                     /translation="MAREWRAAQGKNSGPSEKQKPVSTPLRSPGMLVPKQNVSPLDMS
                     GLSLKSDQAVLGGIFYFLNIFSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFI
                     NPGEIPRGFRFHCQAASDSSHKIPISNFESGHDQAMVLQNLYRFIHPNPGNWPPVYCK
                     SDDRARVNWCLKHMEKSSEIRQDLELLTVEDLVVGIYQQKFLKEPSKTWVRSFLDVAM
                     WDYSSNTRCKWHEDNDIVLCALAVCKKIAYCISNSLATLFGIQLTEAHVPLQDYEAGN
                     SVTPKMVVLDAGRYQKLRVQSPGFSHFSSSNQEQRSNTPTGDSPSGVKTSGQNSSVRG
                     RGITRLLESISNSSSNIHKFCNCETSLSPYMSQKDESKSFSSLS"
     misc_feature    360..944
                     /gene="MAEL"
                     /note="piRNA pathway germ-plasm component; Region:
                     Maelstrom; pfam13017"
                     /db_xref="CDD:404040"
ORIGIN      
        1 acagagacgg gaggatcgag gagaagatcc ccgaactacg gcggagaggc ctgcccgtgg
       61 ctcacgtcgc tgatgccatc ccctactgtt ccgctgactg ggcgctcctg agggaggagg
      121 aaaagaagaa atatgcagaa atggctcgag agtggagggc tgcccaggga aaaaactctg
      181 ggccttcgga gaagcagaaa cctgtttcca ccccactgag gagtccgggc atgcttgtac
      241 caaagcagaa tgtttcaccc ctggatatgt caggcttgtc tctaaaaagt gatcaagctg
      301 tccttggagg cattttttat tttttgaaca tttttagcca tggcgagcta cctcctcact
      361 gtgaacagcg cttcctccct tgtgaaatag gctgtgttaa atattctctc caagaaggta
      421 ttatggcaga tttccacagc tttataaatc ctggtgaaat tccacgagga tttcggtttc
      481 attgtcaggc tgcaagtgat tctagtcaca agattcctat ttcaaacttt gaatccgggc
      541 atgaccaagc aatggtgtta caaaaccttt atagattcat tcatccaaat ccagggaact
      601 ggccacctgt ctactgcaag tctgatgata gagccagagt caactggtgt ttgaagcata
      661 tggagaagtc atcagaaatc aggcaagatc tagaacttct cactgtagag gatcttgtag
      721 tagggatcta ccagcaaaaa tttctcaagg agccctctaa gacctgggtt cggagcttcc
      781 tagatgtggc catgtgggat tattctagca acacaaggtg caagtggcat gaagacaatg
      841 atattgtcct ctgtgcttta gctgtttgca agaaaattgc atactgcatc agtaattctc
      901 tggccactct ctttggaatc cagctcacag aggctcatgt accacttcaa gattatgagg
      961 ccggcaatag tgtgacaccc aaaatggttg tattggatgc agggcgttac cagaagctaa
     1021 gggttcagag tccaggattc tctcatttca gctcttctaa tcaggaacag agatcaaaca
     1081 cacccactgg tgactcccct tctggggtga aaacatctgg ccaaaacagc agtgttcggg
     1141 gaagagggat tacccgctta ctagagagca tctccaattc ctccagcaat atccacaaat
     1201 tctgcaactg tgagacttca ctctcacctt acatgtccca aaaagatgaa tccaaatctt
     1261 tctcttcctt atcttaatga tgatactttt ttcaatttct ggaagaacaa cggacccgac
     1321 ttccgttctg actacagtca tattaaacag accacatcaa caataaatgt cactactcta
     1381 aaaactactt aatttgtaag gaaattctgt ttcatagatt aaaaataatt gtggttggag
     1441 aagatcttgg catttttgct tttttcttga gggcttgttc tactttctga ctgtattatg
     1501 ggaatgccat taaagttttg agtcctataa gaataaaact agcttttaca gagttgtgct
     1561 tttgggaata ttatattttg gtatcttttc tctaccataa aagtattaag tatctgttat
     1621 gaaaggtt
//
LOCUS       XM_032614172            1338 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus maelstrom spermatogenic transposon
            silencer (MAEL), transcript variant X5, mRNA.
ACCESSION   XM_032614172
VERSION     XM_032614172.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1338
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1338
                     /gene="MAEL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744415"
     CDS             73..1119
                     /gene="MAEL"
                     /codon_start=1
                     /product="protein maelstrom homolog isoform X5"
                     /protein_id="XP_032470063.1"
                     /db_xref="GeneID:116744415"
                     /translation="MLVPKQNVSPLDMSGLSLKSDQAVLGGIFYFLNIFSHGELPPHC
                     EQRFLPCEIGCVKYSLQEGIMADFHSFINPGEIPRGFRFHCQAASDSSHKIPISNFES
                     GHDQAMVLQNLYRFIHPNPGNWPPVYCKSDDRARVNWCLKHMEKSSEIRQDLELLTVE
                     DLVVGIYQQKFLKEPSKTWVRSFLDVAMWDYSSNTRCKWHEDNDIVLCALAVCKKIAY
                     CISNSLATLFGIQLTEAHVPLQDYEAGNSVTPKMVVLDAGRYQKLRVQSPGFSHFSSS
                     NQEQRSNTPTGDSPSGVKTSGQNSSVRGRGITRLLESISNSSSNIHKFCNCETSLSPY
                     MSQKDESKSFSSLS"
     misc_feature    202..786
                     /gene="MAEL"
                     /note="piRNA pathway germ-plasm component; Region:
                     Maelstrom; pfam13017"
                     /db_xref="CDD:404040"
ORIGIN      
        1 gtgtcttaag acatctcccc tcaaaatgaa agccacgtta aacctgtttc caccccactg
       61 aggagtccgg gcatgcttgt accaaagcag aatgtttcac ccctggatat gtcaggcttg
      121 tctctaaaaa gtgatcaagc tgtccttgga ggcatttttt attttttgaa catttttagc
      181 catggcgagc tacctcctca ctgtgaacag cgcttcctcc cttgtgaaat aggctgtgtt
      241 aaatattctc tccaagaagg tattatggca gatttccaca gctttataaa tcctggtgaa
      301 attccacgag gatttcggtt tcattgtcag gctgcaagtg attctagtca caagattcct
      361 atttcaaact ttgaatccgg gcatgaccaa gcaatggtgt tacaaaacct ttatagattc
      421 attcatccaa atccagggaa ctggccacct gtctactgca agtctgatga tagagccaga
      481 gtcaactggt gtttgaagca tatggagaag tcatcagaaa tcaggcaaga tctagaactt
      541 ctcactgtag aggatcttgt agtagggatc taccagcaaa aatttctcaa ggagccctct
      601 aagacctggg ttcggagctt cctagatgtg gccatgtggg attattctag caacacaagg
      661 tgcaagtggc atgaagacaa tgatattgtc ctctgtgctt tagctgtttg caagaaaatt
      721 gcatactgca tcagtaattc tctggccact ctctttggaa tccagctcac agaggctcat
      781 gtaccacttc aagattatga ggccggcaat agtgtgacac ccaaaatggt tgtattggat
      841 gcagggcgtt accagaagct aagggttcag agtccaggat tctctcattt cagctcttct
      901 aatcaggaac agagatcaaa cacacccact ggtgactccc cttctggggt gaaaacatct
      961 ggccaaaaca gcagtgttcg gggaagaggg attacccgct tactagagag catctccaat
     1021 tcctccagca atatccacaa attctgcaac tgtgagactt cactctcacc ttacatgtcc
     1081 caaaaagatg aatccaaatc tttctcttcc ttatcttaat gatgatactt ttttcaattt
     1141 ctggaagaac aacggacccg acttccgttc tgactacagt catattaaac agaccacatc
     1201 aacaataaat gtcactactc taaaaactac ttaatttgta aggaaattct gtttcataga
     1261 ttaaaaataa ttgtggttgg agaagatctt ggcatttttg cttttttctt gagggcttgt
     1321 tctactttct gactgtat
//
LOCUS       XM_032614186            1789 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-hydroxytryptamine receptor 1D (HTR1D),
            mRNA.
ACCESSION   XM_032614186
VERSION     XM_032614186.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1789
                     /gene="HTR1D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744423"
     CDS             448..1650
                     /gene="HTR1D"
                     /codon_start=1
                     /product="5-hydroxytryptamine receptor 1D"
                     /protein_id="XP_032470077.1"
                     /db_xref="GeneID:116744423"
                     /translation="MSRTTVKEVAACVKVCGKREPPTMSPPNQSVEGLLQGAPNRSLN
                     AIETPGAWDPGTLQALKISLAVVLSIITLATVLSNAFVLTTIFLTGKLHTPANYLTGS
                     LAMTDLLVSILVTPISIAYTTTHTWSFGQLLCDIWLSSDITCCTASILHLCVIALDRY
                     WAITDALEYSKRRTAGRAAAMIAIILAISICISIPPLFWRQAKAQEEMSDCLVNTSQI
                     SYTIYSTCGAFYFPSVLLIILYGRIYTAARNRILNPPSLYGKRFTTAHLITGSAGSSL
                     CSLNPSLHEGHSHSAGSPLFFNHVKIKLADSVLERQRISAARERKATKTLGIILGAFI
                     ICWLPFFVASLVLPICRDSCWIHPALSDFFTWLGYLNSLINPIIYTVFNEDFRQAFQK
                     VIHFGKAS"
     misc_feature    619..1617
                     /gene="HTR1D"
                     /note="serotonin receptor subtypes 1B and 1D, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; Region: 7tmA_5-HT1B_1D;
                     cd15333"
                     /db_xref="CDD:320455"
     misc_feature    634..714
                     /gene="HTR1D"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320455"
     misc_feature    733..813
                     /gene="HTR1D"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320455"
     misc_feature    847..939
                     /gene="HTR1D"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320455"
     misc_feature    order(856..861,868..873,880..885,1078..1080,1117..1119,
                     1129..1131,1456..1458,1465..1470,1486..1488,1519..1521,
                     1528..1533,1540..1542,1552..1554)
                     /gene="HTR1D"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:320455"
     misc_feature    973..1044
                     /gene="HTR1D"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320455"
     misc_feature    1096..1185
                     /gene="HTR1D"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320455"
     misc_feature    1396..1488
                     /gene="HTR1D"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320455"
     misc_feature    1519..1596
                     /gene="HTR1D"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320455"
ORIGIN      
        1 cccaaacaca gcccaaaata aattaattaa ttaacaaatt aaaaaaaaaa aaaaagctcc
       61 ccagaggcga cctgaaagcc agaatcttct cagaatagga tggaggaaat tattctgaag
      121 ttctcattaa acacatttat ctctcaagct ttggaaggaa ccaaaatgcc aaaggcaaga
      181 attccagagc actgcctaca ctgttttgat atcctgataa atgtctaaca aatctagcat
      241 gtgtcctcta ggcctgacca gagttgctgg gcaaagttcc agaacagtga gacatcttgg
      301 gattcatctg gtttaggaaa gacctttaac taccaggtgg tagtcacctc aatgttcttt
      361 aaatagtcag gttttgaggt cttttcactg gggtctgttc tgatggctgc ctcccaccag
      421 cgtgaaacag aaggatgacc ttattctatg agcagaacaa ctgtgaagga agtagctgcg
      481 tgtgtgaaag tctgtgggaa gagagagcca cctacaatgt ccccaccaaa ccagtcagtg
      541 gaaggccttc tgcagggagc tcccaacaga tccctgaatg ccatagaaac tccgggggct
      601 tgggatccag ggaccctcca agccctcaag atttctcttg ctgtggtcct ttccatcatc
      661 acactggcca cagtcctttc caacgccttt gtgcttacca ccatcttcct gaccgggaag
      721 ctccacaccc cagccaacta tctcactggc tccctggcca tgactgacct cttagtttcc
      781 atcttggtca cgcccatcag catcgcatat accaccaccc acacctggag ctttggccaa
      841 ctcctgtgtg acatctggct gtcttctgac atcacgtgct gcacagcctc catcctgcat
      901 ctctgtgtca ttgctctgga caggtactgg gccatcactg atgccctgga gtatagtaaa
      961 cgccggacag caggccgtgc ggccgccatg attgccatca tcttggccat ctccatctgc
     1021 atctccatcc caccactctt ttggcggcag gccaaagctc aggaagagat gtcggactgc
     1081 ctggtgaaca cttctcagat ctcctacacc atctattcca cctgtggggc cttctacttc
     1141 ccgtctgtgt tgctcatcat cctctatggc cggatctaca cggccgcccg gaaccgcatc
     1201 ctgaatccgc catccctcta cgggaagcgc tttaccacag cccatctcat cacaggctct
     1261 gcggggtcct cgctctgctc gctcaatccc agccttcacg aggggcactc tcattccgcc
     1321 ggctcccctc tcttttttaa ccacgtgaag atcaagcttg cggatagtgt cctggagcgc
     1381 cagaggattt ctgctgcccg agagaggaaa gccactaaaa ccctggggat cattctgggc
     1441 gcctttatca tctgctggct gcccttcttt gttgcatctc tggtcctccc catctgccgg
     1501 gactcctgct ggatccaccc agccctttct gactttttca cctggctagg ctatctaaac
     1561 tccctcatca atccaataat ctatactgtg tttaacgaag actttcggca agcatttcag
     1621 aaagtcatcc atttcgggaa agcctcttag tcttgtttgg tggcaaatct tgttatcttt
     1681 cttgtcctgt aacccaactg gaattgtctt ttttattttt cctgagagct gggttagtcc
     1741 tgatatcttg ggttttggtt caatcaatag aattgttcag cattctttt
//
LOCUS       XR_004347037             535 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744431
            (LOC116744431), ncRNA.
ACCESSION   XR_004347037
VERSION     XR_004347037.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..535
                     /gene="LOC116744431"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116744431"
     ncRNA           1..535
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744431"
                     /product="uncharacterized LOC116744431"
                     /db_xref="GeneID:116744431"
ORIGIN      
        1 gagatgggga aactgctgct gggaagagtt cagtgacttg ccggaggcca cccagcaatc
       61 atggctgcct aagtacacag atgagaaact gaggtgcaga gacttgaaag cccaaggtca
      121 cacaactggc cagcactctg gaaacaccca gggtcttgct gcggttctgc tagaagactg
      181 cggagtcgcc aagggcagtt taacacagat ccacctctct gtaaggaaaa cgagaggaga
      241 gaggcacaag ggagaaccag gtcagctctg atgcaaagga tgagaacttg aaggcgtccc
      301 cagcctggag gggtgctgag tgacagagac actctggggt atcagctgta actctgcaga
      361 atccacctgg ggtctaaaaa ctgcagtttc tattccaatg gccatgctct gcagggcccc
      421 tttcagtgag cctcttcctc tctcagcacc tcaaagtctt ccactatgaa atgattaggt
      481 ggattatcac tagggatgct atctggtgtt aggaactaga aataatattg atgat
//
LOCUS       XM_032614208            1813 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein arginine methyltransferase 6
            (PRMT6), mRNA.
ACCESSION   XM_032614208
VERSION     XM_032614208.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1813
                     /gene="PRMT6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744436"
     CDS             226..1353
                     /gene="PRMT6"
                     /codon_start=1
                     /product="protein arginine N-methyltransferase 6"
                     /protein_id="XP_032470099.1"
                     /db_xref="GeneID:116744436"
                     /translation="MSQPKRRKLGSGGGGEGGEGTEEEDGGELEVALPRPRRTRRERD
                     QLYYQCYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQ
                     AGARRVYAVEASDIWQQAREVVRLNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGCG
                     LLHESMLSSVLHARTKWLKEGGLLLPASAELFVAPISDQMLELRLSFWSQMKQLYGVD
                     MSCLESFATRCLMGHSEIVVQGLSGEDVLARPQCFAQLELARAGLEQELEAGVGGRFR
                     FSCYGSAHMHGFAIWFQVTFPGGDSEKPLVLSTSPFHPVTHWKQALLYLNEPVQVEQD
                     TDVSGEITLLPSQDNHRHLRVLLRYKVGDQEEKTKDFAMED"
     misc_feature    376..>909
                     /gene="PRMT6"
                     /note="Predicted RNA methylase [General function
                     prediction only]; Region: COG4076"
                     /db_xref="CDD:443253"
ORIGIN      
        1 aaaatcatag aatatgcgtg cggagtggtg ggagagggat tccacgacac caaagcaaca
       61 ggtaaaaaag cagtgttcag ctcagaggca tctggcgggc actcgcccgg tgccccgcca
      121 aaagcgggcg ccacgagcgc gcactacaaa taccagaagc gcccgcttcc tagagctcgc
      181 gccgcgtcgc gcaacgcacg ccgggagccg gcccgagccg ccaagatgtc gcagcccaag
      241 agaagaaagc ttgggtcggg gggcggcggc gaaggagggg agggaactga agaggaagat
      301 ggcggagagc tggaggtggc cctgccacga ccccggagga ctcggcggga gcgagaccag
      361 ctgtactacc agtgctactc ggatgtatcg gtccacgagg agatgattgc cgaccgcgtc
      421 cgcaccgatg cctaccgcct gggcattctg cggaactggg cagcgctgcg gggcaagacc
      481 gtgctggacg tgggcgccgg caccggcatt ctcagcatct tctgtgccca ggccggggcc
      541 cggcgcgtgt acgcggtgga ggccagcgac atctggcaac aggcccggga ggtggtgcgg
      601 ctaaacgggc tggaggaccg ggtgcacgtc ctgccggggc cagtggagac ggtggagttg
      661 ccggagcagg tggatgccat cgtgagcgag tggatgggct gcggactcct gcacgagtcc
      721 atgctgagct ctgtgctcca cgcgcggacc aagtggctga aggagggcgg tcttctactg
      781 ccggcttccg ccgagctctt cgtggcgccc atcagcgacc agatgctgga gttgcgccta
      841 agcttctgga gccagatgaa gcagctctac ggtgtggaca tgagctgcct ggagagcttc
      901 gccacgcgct gcctcatggg ccactcagaa atcgtggtgc aaggcctgtc cggcgaggat
      961 gtgctggccc ggccgcagtg ctttgctcag ctggagctgg cccgcgccgg cctggagcag
     1021 gagctggaag cgggggtggg tgggcgcttc cgcttcagct gctacggctc ggctcacatg
     1081 cacggctttg ccatctggtt ccaggtgacc ttccccggag gggactcgga gaaacccctg
     1141 gtgctgtcca cctcgccttt tcacccagtc acgcactgga agcaggcact cctctacctg
     1201 aacgagcctg tgcaagtgga gcaagatacg gacgtttccg gagagatcac gctgctgccc
     1261 tcccaggaca accaccgtca cctacgcgtg ctgctgcgct acaaagtggg cgaccaggag
     1321 gaaaagacca aagactttgc catggaggac tgagcgtggc tttctctccc agctacctcc
     1381 cgaggcggcc agacctgcgc ggtagaggcg gaggggggtc ggaggagaaa gggaaatctc
     1441 acgtgcaagt gttgtttgac agtacgagca tggccgtata tgacgtgcaa tgtatgacac
     1501 tggatatcag acgatccaaa ggagcctaag ccctgaagtg aggattcttc cagaaggatg
     1561 aggttgtgag atgcaccaac attcaggcac tgtccaagct ctgtatgaac tggtactgat
     1621 tgcttagggt catttgggtc acaggaagaa actaccagcc ccaaggagag aaaaacatgg
     1681 tgaagtccta cctgctttcc tcaaagagct tacatttatt tagcactgtg aaactttcca
     1741 gatattttca ttaactcagt ggaccaatgg acattttatt cggtatacaa tataatggtc
     1801 attgtgataa gtg
//
LOCUS       XM_032614218             817 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PDZK1 interacting protein 1 (PDZK1IP1),
            mRNA.
ACCESSION   XM_032614218
VERSION     XM_032614218.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..817
                     /gene="PDZK1IP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744442"
     CDS             208..558
                     /gene="PDZK1IP1"
                     /codon_start=1
                     /product="PDZK1-interacting protein 1"
                     /protein_id="XP_032470109.1"
                     /db_xref="GeneID:116744442"
                     /translation="MSALGLVILGLLTAVPPASSQQGLGNLQPWMQGLIAVAVFLVLV
                     AIAFAVNHFWCQEEQEPVNMVMTVGNKADGILVGTDGKYSSIEASFRSSEHENAYENN
                     VEEEEGGKVRSTPV"
     misc_feature    208..492
                     /gene="PDZK1IP1"
                     /note="Membrane-associated protein 117 kDa,
                     PDZK1-interacting protein 1; Region: MAP17; pfam15807"
                     /db_xref="CDD:464886"
ORIGIN      
        1 caaggcagga gaagaatgtg tcactctatc cccagagccc agccccgctg ccgggaaggg
       61 gagctgacgc aagactccag gaggcctgag gcctggaggg tcagacggag accaggctga
      121 tctcagcaga caccgatagg ccccagggca gctccaggag tccagattcc agcagccgga
      181 gagaaggccc gggagctgcc tgcagccatg tcagccctcg gcctggtcat cctgggcctg
      241 cttacggcag tgccacccgc cagcagtcag caaggcctgg ggaacctgca gccctggatg
      301 cagggcctta ttgccgtggc tgtgttcctg gtcctcgttg caatcgcctt tgccgtgaac
      361 cacttctggt gccaggaaga acaggagcct gtgaacatgg tcatgaccgt cggaaacaaa
      421 gcagatggga tcctggtagg aacggacggc aagtactcct cgatcgaggc cagtttcagg
      481 tccagtgaac atgagaatgc ctatgagaac aacgtggagg aggaggaggg gggcaaggtc
      541 cgcagcaccc cagtgtgacc cctgcttcct ggtgcccgat gtccaggccc ccacacctgc
      601 cccgccctcc agccaagctc ggagctcaga ctatgtccag gttggggctc agccgtggct
      661 ctggggtcct agggggcctc ccactcaatt cagttcagaa gacccttctg aaaaggacaa
      721 tcaactcagc acctcccatc ctgcctcaca tctccctccc tccaaccgtg gaaatggctc
      781 tcatttccgt gaaataaaga cgttttgtac ttctgtg
//
LOCUS       XM_032614232            2246 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Src homology 2 domain containing E (SHE),
            mRNA.
ACCESSION   XM_032614232
VERSION     XM_032614232.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2246
                     /gene="SHE"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744446"
     CDS             458..1957
                     /gene="SHE"
                     /codon_start=1
                     /product="SH2 domain-containing adapter protein E"
                     /protein_id="XP_032470123.1"
                     /db_xref="GeneID:116744446"
                     /translation="MQWPPAPGASPCLSWASSLACSAATTLLSRAGRAPLMAAKWFKE
                     FPLNLKTVSERAKPGGGGGGKLRKNSEAGGAGPAPGKGRKNSAAELGSSRAGVGPPKD
                     SRLSRDSLQGLIQAAAGKGRKNSRATEEEPHRGAAKSSGCSTYINRLIKVDTQEKNGK
                     SNYPSSSSSSSSSNSSSSSASSSPSSLGPELDKGKIIKQQDTVIILEDYADPYDAKRT
                     KGQRDAERVGENDGYMEPYDAQQMITEIRRRGSKDPLVKALQLLDSPCEPGENGTKPE
                     ALAKRRSSKELLGKPPQLYDTPYEPAAEGGSRAEGPERKARLPQDDERPAAEYEQPWE
                     WKKEQIVRALSVQFEGSERPSVKEETVRQHHRQKSWTQKILKPTLSDHSEGERVDPAL
                     PLEKQPWYHGAITRAEAESRLQPCKEAGYLVRNSESGTSRYSIALKTSQGCVHIIVAQ
                     TKDNKYTLNQTSAVFDNIPEVVHYYSNEKLPFKGAEHMTLLYPVHSKLH"
     misc_feature    1646..1939
                     /gene="SHE"
                     /note="Src homology 2 domain found in SH2
                     domain-containing adapter protein E (SHE); Region:
                     SH2_SHE; cd10391"
                     /db_xref="CDD:198254"
     misc_feature    order(1673..1675,1727..1729,1790..1792,1796..1798)
                     /gene="SHE"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198254"
     misc_feature    order(1793..1795,1880..1882)
                     /gene="SHE"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198254"
ORIGIN      
        1 gccagcctcg gaggggaggg gcgcgcggag agggcgggct gcccgctggc ggcccaccgt
       61 ccgtcgcggc gccggggaca ctcccgccgc ctccgcttcg tctcccctgg tccccgggag
      121 tgtgggcagg gctgtccccg ggcttccgtg ggcccggcct ctcccacttc gggaggaaaa
      181 cgcaggggaa gcccccggcg cccgccgccc ccggagaccc gcggagcccc tggccgtgca
      241 ggcgctgaag acgagctcgg gcggggcccc agtgcgtcgt gcctgtcgcc gtccgtgtcc
      301 ggagcggcgg ctcgcgcccg cccgctcggc gccccgaaca cccctccccg ggccataggg
      361 gccccaccct gcggggtgta ggcgacggcc ggcccgggac gagcggagca gccgtcgcgg
      421 ggcctcgctg cggcctctag cgccccagcc ccggggaatg cagtggcccc cggcccctgg
      481 cgcttctccg tgtctaagct gggcctcctc gctcgcctgc tccgcggcca cgacgctcct
      541 gagccgcgcc ggccgggccc ccctcatggc ggccaagtgg ttcaaggagt tccccctgaa
      601 cctgaagaca gtgtcggagc gggccaagcc cggcggcggg ggaggcggca aattgcgcaa
      661 gaactcggag gcgggcggcg cggggcccgc cccgggcaag ggccgaaaga actcggcggc
      721 cgagctgggg agcagccggg ccggggtcgg cccccccaag gatagccggc tatcccgaga
      781 cagcctgcag ggtctgattc aggccgccgc gggcaagggc cgcaagaact cccgggccac
      841 cgaggaggag ccccaccggg gcgcggccaa gagctcaggc tgcagcacct acatcaacag
      901 gctcatcaag gtggacactc aggagaagaa tgggaagagc aactacccca gcagcagtag
      961 tagcagcagc agtagcaaca gcagctcttc ctccgcgtcc tcttcccctt cctccctggg
     1021 acccgaactg gacaagggca agattattaa gcagcaagac acggtcatca ttttagaaga
     1081 ctacgctgac ccttatgatg ctaaacggac gaaaggccaa agggatgcag aaagagtagg
     1141 ggagaatgat ggatacatgg aaccctatga tgcacagcaa atgataacag aaatcagacg
     1201 acgaggttcc aaagaccctc tggtgaaggc tcttcagctg ctcgacagcc cctgtgagcc
     1261 aggggagaac ggcacgaagc ccgaggcgct ggccaagaga cggagctcca aggagctgct
     1321 gggaaagccg ccgcagctgt acgacacgcc ctacgagccg gcggctgaag gcggctcgcg
     1381 cgccgagggg ccggagcgga aggcgcggct accccaggac gacgagaggc ccgcggccga
     1441 gtacgagcag ccctgggagt ggaagaagga gcagatcgtg cgggcgctgt cggttcagtt
     1501 tgaaggctct gagcgacctt ccgtcaagga ggagacagtg aggcaacacc accgacagaa
     1561 gagttggacc cagaagatct tgaagccaac cctctctgac cacagtgagg gggaaagagt
     1621 ggacccagcc ctgccactgg agaagcagcc ttggtatcat ggtgccatca cccgtgctga
     1681 ggctgagagt cgactacaac cctgcaaaga agctgggtac ctggttcgaa acagcgagtc
     1741 agggaccagt aggtactcca ttgcactaaa gactagtcaa ggatgtgtcc acatcatagt
     1801 ggctcagacc aaagacaaca agtataccct gaatcagacg agtgctgtct ttgacaacat
     1861 cccggaagtg gtacactatt attccaatga gaagctgcct ttcaaggggg cagaacatat
     1921 gaccttgctc taccctgtgc acagcaagct gcactaaggt tcagccacca aaagccccag
     1981 cggggcctct cacacctagg agggcatcag cacccaacca gtatctcagg ggacaaggct
     2041 ggactgcacc ataatatttt ggaggaagcg ggacgcttca tttaggagtc aaaaagtctt
     2101 cggccttgaa tccattccat gacacttggt tactgacctg tcccttttct ccttgctaag
     2161 tagttctaca atgagaaacc ataatttacc agttgcctcc agtcctggag tagggtgctc
     2221 tatttgggac gtgaccctca ggaaag
//
LOCUS       XM_032614241            1044 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus complement C1q B chain (C1QB), mRNA.
ACCESSION   XM_032614241
VERSION     XM_032614241.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1044
                     /gene="C1QB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744455"
     CDS             32..904
                     /gene="C1QB"
                     /codon_start=1
                     /product="complement C1q subcomponent subunit B"
                     /protein_id="XP_032470132.1"
                     /db_xref="GeneID:116744455"
                     /translation="MELPLWTENRRLPAACPTAAQPSGIRGRQVPRKRLSRAMMKTPR
                     GSVPVLLPLMLLSLLHVSRAQSGCTGHPAIPGIPGIPGVPGSDGKPGTPGIKGEKGLP
                     GLAGDHGELGQKGDPGFPGIPGKVGPKGPVGPKGAPGPPGAHGPKGESGDYKATQKIA
                     FSATRTINSPLRRDQVIRFDHVITNTNNNYEYRNGKFTCRLPGLYYFTYHASSRGNLC
                     VNLMRGREEIQKVLTFCDYVYNTFQVTTGSVVLKLGLGETVFLQATDKNALVGIDGAN
                     SIFTGFLLFPDAEV"
     misc_feature    <80..>415
                     /gene="C1QB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    485..892
                     /gene="C1QB"
                     /note="Complement component C1q domain; Region: C1Q;
                     smart00110"
                     /db_xref="CDD:128420"
ORIGIN      
        1 gtcaggggaa ggcccttgtt ctagctggag aatggaactt ccgctttgga ctgagaacag
       61 gaggctccca gctgcctgtc ccactgctgc ccagcccagc ggcatcagag gacgccaggt
      121 tcccaggaag cggctgagca gggccatgat gaagaccccg cggggcagcg tcccagtgct
      181 gctgccgctg atgctcctga gtctgctcca cgtctcccgg gcccagagtg gctgcactgg
      241 gcacccggcc atccctggca tcccgggcat ccccggggta ccgggctccg acggcaaacc
      301 agggactcca gggataaagg gagagaaagg gctgccgggg ctagctggag accacggtga
      361 gcttggacag aagggggacc cagggtttcc tgggattcca ggaaaagtcg gccccaaggg
      421 ccccgttggc cccaaaggtg ccccagggcc tcccggagcc cacggcccca agggcgaatc
      481 aggagactac aaggccacgc agaaaatcgc cttctcggcc acacgcacca tcaacagccc
      541 cctgaggcgg gaccaggtca tccgcttcga ccacgtgatc accaacacca acaacaacta
      601 cgagtatcga aacggcaagt tcacgtgcag gttgcccggc ctctactact tcacctacca
      661 tgccagctct cgagggaacc tgtgcgtaaa cctcatgcgg ggccgggagg agatacagaa
      721 ggtgctcacc ttctgcgact atgtctacaa caccttccag gtcaccacgg gcagtgtcgt
      781 gctcaagctg gggctggggg agaccgtctt cctgcaggcc accgacaaga acgccctggt
      841 aggcatcgat ggggccaaca gcattttcac cgggttcctg ctcttcccag atgcagaggt
      901 gtgacctgtg ggtccaattc accccctccc ctgccagcca cgctctcttt acccccaaca
      961 ccagccccca cctggccaaa acacacagta gggctccatg gatgttgctg agtgaatgag
     1021 taaataaact tttcaaggcc aagg
//
LOCUS       XM_032614252             642 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lymphotactin-like (LOC116744461),
            transcript variant X1, mRNA.
ACCESSION   XM_032614252
VERSION     XM_032614252.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..642
                     /gene="LOC116744461"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744461"
     CDS             125..460
                     /gene="LOC116744461"
                     /codon_start=1
                     /product="lymphotactin-like"
                     /protein_id="XP_032470143.1"
                     /db_xref="GeneID:116744461"
                     /translation="MRLLILAFLGICCLAAYTVEGVGSEVLEKTICVSLTTQRLPIKN
                     IKTYTIKEGPMKAVIFITRRGLKVCADPQVEWVNKAVRTIKSTRRNVSQTKPTGAQQS
                     SNTAVTLSG"
     misc_feature    188..394
                     /gene="LOC116744461"
                     /note="C or lymphotactin subgroup, 1 of 4 subgroup
                     designations of chemokines based on the arrangement of two
                     N-terminal, conserved cysteine residues. Most of the known
                     chemokines (cd00169) belong to either the CC (cd00272) or
                     CXC (cd00273) subclass. The two...; Region: Chemokine_C;
                     cd00271"
                     /db_xref="CDD:238169"
     misc_feature    order(188..262,278..292,350..376,377..394)
                     /gene="LOC116744461"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:238169"
     misc_feature    221..259
                     /gene="LOC116744461"
                     /note="N-loop [active]"
                     /db_xref="CDD:238169"
     misc_feature    order(254..256,260..262,311..316,386..388)
                     /gene="LOC116744461"
                     /note="putative glycosaminoglycan (GAG) binding site
                     [chemical binding]; other site"
                     /db_xref="CDD:238169"
     misc_feature    278..292
                     /gene="LOC116744461"
                     /note="30s-loop; other site"
                     /db_xref="CDD:238169"
     misc_feature    311..316
                     /gene="LOC116744461"
                     /note="40s-loop; other site"
                     /db_xref="CDD:238169"
     misc_feature    377..394
                     /gene="LOC116744461"
                     /note="C-terminal tail; other site"
                     /db_xref="CDD:238169"
ORIGIN      
        1 tttttctgag gacaactttt caaaatcttt taaaaaggaa gtgcgctgat cactggagga
       61 ataaaggaga ctgaaaggat cagttcctca gcctctcgct gcacagctca tcaggacctc
      121 agccatgaga cttctcatcc tggccttcct cgggatctgc tgtctcgctg catacactgt
      181 ggaaggtgtg gggagtgaag ttctagaaaa gaccatctgt gtgagtctga ctacccagcg
      241 actgccaatt aaaaacatca agacctacac catcaaggag ggccccatga aagcagtgat
      301 atttattacc agacgtggcc ttaaagtctg tgctgatcca caagttgaat gggtgaacaa
      361 agcagtccga acaataaagt ccaccaggag aaatgtgagc cagaccaagc ctacaggagc
      421 ccagcaatcc agcaatacag ctgtgaccct gagtgggtag tgaccctctg gcatcttgtc
      481 ccctcactag ccaggcagct catttccctt taaagctcat ggactaatta cattatattc
      541 accttttata aagtgctgct tgagtcaaat tattgttttt atatttttat gtctttcata
      601 ttcatttaga tgctctaatt aatacatatt tgttattaag aa
//
LOCUS       XM_032614262             723 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lymphotactin-like (LOC116744461),
            transcript variant X2, mRNA.
ACCESSION   XM_032614262
VERSION     XM_032614262.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..723
                     /gene="LOC116744461"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744461"
     CDS             206..541
                     /gene="LOC116744461"
                     /codon_start=1
                     /product="lymphotactin-like"
                     /protein_id="XP_032470153.1"
                     /db_xref="GeneID:116744461"
                     /translation="MRLLILAFLGICCLAAYTVEGVGSEVLEKTICVSLTTQRLPIKN
                     IKTYTIKEGPMKAVIFITRRGLKVCADPQVEWVNKAVRTIKSTRRNVSQTKPTGAQQS
                     SNTAVTLSG"
     misc_feature    269..475
                     /gene="LOC116744461"
                     /note="C or lymphotactin subgroup, 1 of 4 subgroup
                     designations of chemokines based on the arrangement of two
                     N-terminal, conserved cysteine residues. Most of the known
                     chemokines (cd00169) belong to either the CC (cd00272) or
                     CXC (cd00273) subclass. The two...; Region: Chemokine_C;
                     cd00271"
                     /db_xref="CDD:238169"
     misc_feature    order(269..343,359..373,431..457,458..475)
                     /gene="LOC116744461"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:238169"
     misc_feature    302..340
                     /gene="LOC116744461"
                     /note="N-loop [active]"
                     /db_xref="CDD:238169"
     misc_feature    order(335..337,341..343,392..397,467..469)
                     /gene="LOC116744461"
                     /note="putative glycosaminoglycan (GAG) binding site
                     [chemical binding]; other site"
                     /db_xref="CDD:238169"
     misc_feature    359..373
                     /gene="LOC116744461"
                     /note="30s-loop; other site"
                     /db_xref="CDD:238169"
     misc_feature    392..397
                     /gene="LOC116744461"
                     /note="40s-loop; other site"
                     /db_xref="CDD:238169"
     misc_feature    458..475
                     /gene="LOC116744461"
                     /note="C-terminal tail; other site"
                     /db_xref="CDD:238169"
ORIGIN      
        1 gcaggatgac ttaagccagt ccttttaacc tgtttgtatc tgtctcttca tgaataaaat
       61 ggacacaatc atacctgctc tatctttctg tacaaggctc ttgggaggat caaacaagga
      121 agtgcgctga tcactggagg aataaaggag actgaaagga tcagttcctc agcctctcgc
      181 tgcacagctc atcaggacct cagccatgag acttctcatc ctggccttcc tcgggatctg
      241 ctgtctcgct gcatacactg tggaaggtgt ggggagtgaa gttctagaaa agaccatctg
      301 tgtgagtctg actacccagc gactgccaat taaaaacatc aagacctaca ccatcaagga
      361 gggccccatg aaagcagtga tatttattac cagacgtggc cttaaagtct gtgctgatcc
      421 acaagttgaa tgggtgaaca aagcagtccg aacaataaag tccaccagga gaaatgtgag
      481 ccagaccaag cctacaggag cccagcaatc cagcaataca gctgtgaccc tgagtgggta
      541 gtgaccctct ggcatcttgt cccctcacta gccaggcagc tcatttccct ttaaagctca
      601 tggactaatt acattatatt caccttttat aaagtgctgc ttgagtcaaa ttattgtttt
      661 tatattttta tgtctttcat attcatttag atgctctaat taatacatat ttgttattaa
      721 gaa
//
LOCUS       XM_032614272             660 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lymphotactin-like (LOC116744470), mRNA.
ACCESSION   XM_032614272
VERSION     XM_032614272.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..660
                     /gene="LOC116744470"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744470"
     CDS             212..547
                     /gene="LOC116744470"
                     /codon_start=1
                     /product="lymphotactin-like"
                     /protein_id="XP_032470163.1"
                     /db_xref="GeneID:116744470"
                     /translation="MRLLILAFLGICCLAAYTVEGVGTEVLDKNICVSLTTRRLPIKN
                     IKTYTIKEGPMKAVIFITRRGLKVCADPQVEWVNKAVRTIKSTRRNVSQTKPTGAQQS
                     SNTAVTLSG"
     misc_feature    275..481
                     /gene="LOC116744470"
                     /note="small cytokines, including a number of secreted
                     growth factors and interferons involved in mitogenic,
                     chemotactic, and inflammatory activity; distinguished from
                     other cytokines by their receptors, which are G-protein
                     coupled receptors; divided into 4...; Region: Chemokine;
                     cl00134"
                     /db_xref="CDD:469625"
     misc_feature    order(302..316,329..346,437..463)
                     /gene="LOC116744470"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:238098"
     misc_feature    order(308..316,329..343)
                     /gene="LOC116744470"
                     /note="N-loop [active]"
                     /db_xref="CDD:238098"
     misc_feature    order(335..343,401..403,407..409)
                     /gene="LOC116744470"
                     /note="putative glycosaminoglycan (GAG) binding site
                     [chemical binding]; other site"
                     /db_xref="CDD:238098"
     misc_feature    order(359..361,374..376,428..430,434..436,443..448,
                     455..457)
                     /gene="LOC116744470"
                     /note="putative glycosaminoglycan (GAG) binding site
                     [chemical binding]; other site"
                     /db_xref="CDD:238098"
     misc_feature    order(362..364,374..376)
                     /gene="LOC116744470"
                     /note="30s-loop; other site"
                     /db_xref="CDD:238098"
     misc_feature    order(395..397,401..403)
                     /gene="LOC116744470"
                     /note="40s-loop; other site"
                     /db_xref="CDD:238098"
ORIGIN      
        1 catgtagcag gatgacttaa gccagtcctt ttaacctgtt tgtatctgtc tcttcatgaa
       61 taaaatggac acaatcatac ctgctctatc tttctgtaca aggctcttgg gaggatcaaa
      121 caaggaagtg cgctgatcat tggaggaata aaagagactg aaaggatcag ttcctcagcc
      181 tctcgctgca cagctcatca ggacctcagc catgagactt ctcatcctgg ccttcctcgg
      241 gatctgctgt ctcgctgcat acactgtgga aggtgtgggg actgaagtcc tagacaagaa
      301 catctgtgtg agtctgacta cccggcgact gccaattaaa aacatcaaga cctacaccat
      361 caaggagggc cccatgaaag cagtgatatt tattaccaga cgtggcctta aagtctgtgc
      421 tgatccacaa gttgaatggg tgaacaaagc agtccgaaca ataaagtcca ccaggagaaa
      481 tgtgagccag accaagccta caggagccca acaatccagc aatacagctg tgaccctgag
      541 tgggtagtga ccctctggca tcttgtcccc tcactagcca ggcagctcat ttccctttaa
      601 agctcatgga ctaattacat tatattcacc ttttataaag tgctgcttga gtcaaattat
//
LOCUS       XR_004347057            1626 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744477
            (LOC116744477), transcript variant X1, ncRNA.
ACCESSION   XR_004347057
VERSION     XR_004347057.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1626
                     /gene="LOC116744477"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744477"
     ncRNA           1..1626
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744477"
                     /product="uncharacterized LOC116744477, transcript variant
                     X1"
                     /db_xref="GeneID:116744477"
ORIGIN      
        1 gtgggtgagg ccccgtgggc ctcgaaccct gatctgctgc tagccggcga ataactggaa
       61 ttaacggagc aggtttagtg tgcacgtgag atactctgga cctttccacc cgccccaccc
      121 gactgcgggg atagtcacac agtcacgtgc cgggtgggtc ccgggggtcg cacttcgctg
      181 gagctggttc ccgagccgct ggcagtgaag tgacggggaa agcgcgggac cggaaggagg
      241 gacgcggggc tccaggactt ccagcgcttt caggctaaca ctggatgcac acgaaatcac
      301 atgttgagca aatatgtggg tggatcaatc agtatcagat gataactgcg cttaaggaaa
      361 ataactttca agtcatactt gcttaaaaga gatctactta gtcaaaaggc tacattgctt
      421 aaacagtgag aaaaatccat gaatagatag atttcataat gacaaaaaaa aagaagaaaa
      481 gaaaagaagg aaccatgagt cacccacagg gaactgtgac ataataagaa atatgtattt
      541 ggtgtctaca ctggcttcct ggcacggagc tcctgaaaca cttggaattt cttgagtgat
      601 cgggaatgaa cgagagttca gaagaccaaa tatttcaaac cgaccagtga agccctttgg
      661 tgcggttttg actccaaagc agcaagaccg tctcctggtc tcccagggcc ctgtgccacg
      721 gggtcacttt tcaaattaag gtgaaatcca agtgaaggtg gaaaggcaag gtgtgaggtc
      781 cttcgacagc atccctggta ggtaaccatc cactctctat aaacacctcc aatggcagga
      841 aatcttggcc acattttatg aagcttcact gttgtctcac caggagccag tctgccccat
      901 ttcccaggac agcacttcga gtcttagaga cggtgttctc atccccaccc cgagtcagtg
      961 attcctacct ggagtctagg gaatgtgagg ggacagccat cctattggac aatatcagct
     1021 ccttggaaca gccaaggtta gcatctgggg gcttttcctt agacgccgtg atgccctgct
     1081 gaggttagaa attgatttca gtggttagaa agcgagaaca cacactaaaa tctgtaaaaa
     1141 tggttttatt ttattttttt taagattttt tggttttgac gtggaccatt tttaaagtct
     1201 ttattgaatt tgttacaata ttgcttctgt tttatgtttt ggttttttgg ccacgaggca
     1261 tgtgggagct tagctccccc agtgcagggg ggtgtgggat tgaacccaca gcccctgcgt
     1321 tggaaggcga agtcttaacc actggaccac cagggaagtc cctgaaagtg gttctaaaac
     1381 cactctcttt aagttttctc ttccccaggg taaacattgc ttgctctttg aaatattggt
     1441 aatacaggtt tatatatttt taaaaatata ataaataatg aagtataaat tatatataag
     1501 aaattacatg tatattatat taaaatatat atgtatatta ttagaaaagg gtagcctaac
     1561 ccacactcac ttttaggaca agacctagcg actgtacaca tcacttgtcc tcacagctca
     1621 ttggct
//
LOCUS       XR_004347058            2975 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744477
            (LOC116744477), transcript variant X2, ncRNA.
ACCESSION   XR_004347058
VERSION     XR_004347058.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2975
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2975
                     /gene="LOC116744477"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116744477"
     ncRNA           1..2975
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744477"
                     /product="uncharacterized LOC116744477, transcript variant
                     X2"
                     /db_xref="GeneID:116744477"
ORIGIN      
        1 gtgggtgagg ccccgtgggc ctcgaaccct gatctgctgc tagccggcga ataactggaa
       61 ttaacggagc aggtttagtg tgcacgtgag atactctgga cctttccacc cgccccaccc
      121 gactgcgggg atagtcacac agtcacgtgc cgggtgggtc ccgggggtcg cacttcgctg
      181 gagctggttc ccgagccgct ggcagtgaag tgacggggaa agcgcgggac cggaaggagg
      241 gacgcggggc tccaggactt ccagcgcttt caggctaaca ctggatgcac acgaaatcac
      301 atgttgagca aatatgtggg tggatcaatc agtatcagat gataactgcg cttaaggaaa
      361 ataactttca agtcatactt gcttaaaaga gatctactta gtcaaaaggc tacattgctt
      421 aaacagtgag aaaaatccat gaatagatag atttcataat gacaaaaaaa aagaagaaaa
      481 gaaaagaagg aaccatgagt cacccacagg gaactgtgac ataataagaa atatgtattt
      541 ggtgtctaca ctggcttcct ggcacggagc tcctgaaaca cttggaattt cttgagtgat
      601 cgggaatgaa cgagagttca gaagaccaaa tatttcaaac cgaccagtga agccctttgg
      661 tgcggttttg actccaaagc agcaagaccg tctcctggtc tcccagggcc ctgtgccacg
      721 gggtcacttt tcaaattaag gtgaaatcca agtgaaggtg gaaaggcaag gtgtgaggtc
      781 cttcgacagc atccctggcc cagcggtgag gctgcgtaag ggtcacggga gtggagacac
      841 gcagaacgga gccagtattc agttcaggaa tcataggatt tagtgcatgt gatgagcaca
      901 cagcacagct tagtaagagt agggaaaaca gagaaggggt accgacctcg ccaaggagaa
      961 gtccgggagg aggcagctca gcgccagcag ggtccctggt tgctgatggt ttcaggacat
     1021 ctgtgagtgg gactcgccct cgtctgggac agggcctcgg gcagcgcctg gacattccgc
     1081 agtgtctggt tgggtcctcc agccaagagc cttcagtgtc cgactctggg gggtctgcct
     1141 ggaggtgggc aggtgctgcc ccagggcctc tcgtctccag cagctactcc gtgccagcga
     1201 aggtttccgt gatgttacaa ggcaagtcct taaattcatt ctctaattct gtgagtctct
     1261 tcctgttttg taaacaagtt catttgtagc atttttcttt ttagattccg cgtatcgata
     1321 tcgtatgttt gtcttactaa cacaacattg ttaatcacct atgcttcaat atacaataaa
     1381 aattaaacaa acaaacaaaa atctaagtcc tcatctaaag gaacagctct tagctcacca
     1441 tacggacgca ctcacggtcc ggcacccgac gctttagaac aactagcctg gcagttgaca
     1501 ctggccgttg ggactccact ttgactgctg aacaaagctt gaatccgagg agtttcacac
     1561 cacataagca ggaagcgcag actgcagcgc aaccgtccta aacggagagt ttcactgaaa
     1621 tattcaaata cgaggaacgt gtgtgaaaga cgtttgttct tggctgacta acacccgttc
     1681 agtccacctc cagtcacaat tccgggtttt gtttgggaat ctagtcttcc cctctgtcca
     1741 tctggttgag ggggagtctg ggggtggctt gtgacctagc caaacctctc agagccccac
     1801 agtccctaga caagcgtgac tgggtcggga ttggcacgtg actcattcca gctactagaa
     1861 aagcaggttc ctttaattct gctgccatct tgccatgtgg agcatatgac aatgaaagaa
     1921 cttttttttt tagcccagga tccagccacg tttcgcgtct gctctccact ggggcttctt
     1981 agccacgaga tccaggaaat cctcttctcc atccctgttt tgtttttctc cttacaccag
     2041 tttgtagtgg ggtttctgta atttgcagta gaaaaaaatc ctaacgggta catttgagat
     2101 tattcctaac tctcctaaat ggaagataac acaataaaca attaaaataa ttaactaaga
     2161 taattaaaaa ccaagtaaac tatctgacta gttcatctac ccgcacgaat gaactgttat
     2221 gtagcagaga tatacagagc gccattgttc tgcactgtgc taccagaatc tgaagcccta
     2281 gcctgatcac aggctgcaag aattctttgc cacacgttgc tcggtaacga atattactgt
     2341 agatttaaga gcttgaaaat tccgtcatta tcaagaattc ggcctgaaat ctttctggaa
     2401 cgacgtggga atataaataa gtttaaaagg catcaagcca ttccttcctc tttctaacag
     2461 cttcttttct aggaagtcaa actctccttt tacacagacc ccttgttctc accctgtggt
     2521 tcttaaaaga cgccaacgat acttcttctt accacttaca ctgaataaat aattcagggt
     2581 aatataatac ccagtggaac ttagaactga tagacttctt ccaagtcctt taagatgtat
     2641 cttcaaaaga aaacactgaa gcacactttt atggattcct ctattcttcc taataaggtc
     2701 aaaataataa caacactcat acttcacatt gtctgtttgg caaaggcccg tttgaccgac
     2761 agggtggtgc tggtagtagg cacgtgaacc ctgcaaggct cctgccttgt gcgagattaa
     2821 gggacgcagg cagaggggaa tggaaaggtg ttctatcaca tcttctctaa cgaacgaccg
     2881 catcagagtt accttagaaa caaagggttt atctcatctt aaagatgggc agggacttcc
     2941 ctggtggtat agcagttaag aatccacctg ccagt
//
LOCUS       XR_004347060             505 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744481
            (LOC116744481), ncRNA.
ACCESSION   XR_004347060
VERSION     XR_004347060.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..505
                     /gene="LOC116744481"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744481"
     ncRNA           1..505
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744481"
                     /product="uncharacterized LOC116744481"
                     /db_xref="GeneID:116744481"
ORIGIN      
        1 aggtgaagag cggaagtgaa tagagggttt ctggagaaga gctaaactca agatgacaag
       61 ggaaggagga cgtggggcag tggggccggg agcaaggcac tcccggtgct aacaacattg
      121 aactcttccc caaatttgca catccgcgag tgagttggat tcttcaaatg atgcgtggca
      181 cttcatacat gaccacaagt ctgggtcttg cagcagaaga tacgactggc ctaattgtca
      241 gcgggggtaa accatttagt tttattatgg cttggagcca tagaagccgt agtaggactt
      301 gcttctgact gcagtgtaaa gtattatcta gtgagggtgg tgtattgggt gggaagtctg
      361 cactgaatta agtgaaaaat atactggaaa gactattgaa agtacacaaa ttctggtgct
      421 ttgttgtagg ggggtggtgg agcctatacc tattgatata gaaatttata ccgatttgaa
      481 ataaaaatac atttcatact catta
//
LOCUS       XM_032614304            4371 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium voltage-gated channel subfamily
            Q member 4 (KCNQ4), transcript variant X1, mRNA.
ACCESSION   XM_032614304
VERSION     XM_032614304.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4371
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4371
                     /gene="KCNQ4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 31 Proteins, and 76%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744485"
     CDS             316..2403
                     /gene="KCNQ4"
                     /codon_start=1
                     /product="potassium voltage-gated channel subfamily KQT
                     member 4 isoform X1"
                     /protein_id="XP_032470195.1"
                     /db_xref="GeneID:116744485"
                     /translation="MAEAPPRRLGLAPLPADAPRAELVALTAVQSEQGEAGGGGSPRR
                     LGLLGSPLPPDAPLPGPGSGSGSACGQRSSAAYKRYRRLQNWVYNVLERPRGWAFVYH
                     VFIFLLVFSCLVLSVLSTIQEHQEIANECLLILEFVMIVVFGLEYIIRIWSAGCCCRY
                     RGWQGRFRFARKPFCVIDFIVFVASVAVIAAGTQGNIFATSALRSMRFLQILRMVRMD
                     RRGGTWKLLGSVVYAHSKELITAWYLGFLVLIFTSFLVYLAEKDANSDFSSYADSLWW
                     GTITLTTIGYGDKTPHTWLGRVLAAGFALIGVSFFALPAGILGSGFALKVQEQHRQKH
                     FEKRRMPAANLIQAAWRLYSTDTSRAYLTATWYYYDSILPSFKELALLFEHVQRARNG
                     GLRPLEVRRAPVPDGAPSRYPPVATCHRPGSTFFCPGESRRMGIKDRIRMGSSQRRTG
                     PSKQHLAPPPMPTSPSSEQEGEASSPTKVQKSWSFNDRTRFRASLRLKPRASTEEGPS
                     EEVAEEKSYQCELTVDDVMPAVKTVIRSVRILKFLVAKRKFKETLRPYDVKDVIEQYS
                     AGHLDMLGRIKSLQARVDQIVGRGPGDRKSREKVDKGPCDTEAVDEISMMGRVVKVEK
                     QVQSIEHKLDLLLGFYSRCLRSGTSASLGTVQVPLFDPDITSDYHSPVDHEDISVSAQ
                     TLSISRSVSTNMD"
     misc_feature    607..1305
                     /gene="KCNQ4"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    1717..2256
                     /gene="KCNQ4"
                     /note="KCNQ voltage-gated potassium channel; Region:
                     KCNQ_channel; pfam03520"
                     /db_xref="CDD:460954"
ORIGIN      
        1 gacatgtgag cggcgcgccg gcggcaggtg gaaaggcgag cggcatggag cgcgtaataa
       61 gagagttgga gtcggaaaga gccgcccagt cgccggggaa gagggcggtc agcgcgggct
      121 ccggcggccc cccggctctg agcgcccgcc cccggccccg gagcggcccc ggcccggccc
      181 ctagcccccg ccgaccgcgc ccgcctcggg ccgcccagcc ggccctgggt ccgagacatg
      241 cgccgctgag cgcccctcgc gcgccccagc cccggaccgg acccgggccc cggccccccc
      301 cgcctggcgc cgcccatggc cgaggccccc ccgcgccgcc tcggcctagc ccccctgccc
      361 gcggacgccc cccgcgccga gctggtggcg ctcacggcgg tgcagagcga gcagggcgag
      421 gcgggcgggg gcggctcccc gcgccgcctg ggcctcctgg gcagccccct gccgccggac
      481 gcgcccctcc cagggccggg ctcgggctcg ggctccgcct gcggccagcg ctcctcggcc
      541 gcgtacaagc gctaccgacg cctgcagaac tgggtctaca acgtgctgga gcgaccccgc
      601 ggctgggcct tcgtctacca cgtcttcata tttttgctgg tcttcagctg cctggtgctg
      661 tccgtgctgt ccactatcca ggagcaccag gaaattgcca acgagtgtct ccttatcttg
      721 gaattcgtga tgatcgtggt gtttggtctg gagtacatca tccgcatctg gtccgcggga
      781 tgctgctgcc gctaccgagg atggcagggc cgtttccgct ttgccagaaa acccttctgt
      841 gtcatcgact tcatcgtgtt cgtggcctca gtggccgtca tcgccgccgg cacgcagggc
      901 aacatctttg ccacgtctgc gttgcgcagc atgcgcttcc tgcagatcct gcgcatggtg
      961 cgcatggacc gccgcggcgg cacctggaag ctgctgggct cggtggtcta cgctcacagc
     1021 aaggagctga tcaccgcctg gtacctcggg tttctggtgc tcatcttcac ctccttcctg
     1081 gtctatctgg ctgagaagga cgccaactcc gacttctcct cctacgccga ctcgctctgg
     1141 tgggggacga ttacactgac gaccattggc tatggtgaca agacaccaca cacgtggctg
     1201 ggcagggtcc tggctgctgg cttcgcctta ataggcgtct ccttctttgc cttgcctgcc
     1261 ggcatccttg gctccggctt tgccctgaag gtgcaggagc agcacaggca gaagcacttt
     1321 gagaagcgga ggatgccagc agccaacctc atccaggctg catggcgcct gtactccacc
     1381 gacacgagcc gggcctacct gacagccact tggtactact atgacagcat cctcccgtcc
     1441 ttcaaagagc tggccctctt gtttgagcac gtgcaacggg cccgcaacgg gggcctacgg
     1501 cccctggagg tgcggcgggc gccagtaccc gacggagcgc cctcccgtta cccgcccgtt
     1561 gccacctgcc accggccggg cagcaccttc ttctgccctg gggaaagcag gcggatgggt
     1621 atcaaagacc gcatccgcat gggcagctcc cagcgacgga caggcccctc caagcagcac
     1681 ctagcacctc caccgatgcc cacttccccg agcagtgagc aggaggggga ggccagcagc
     1741 cccaccaagg tgcagaagag ctggagcttc aacgaccgca cccgcttccg ggcctccctg
     1801 agactcaaac cccgtgcctc cactgaggag ggcccctcag aggaagtggc agaggagaag
     1861 agctaccagt gtgaactcac agtggacgat gtcatgcccg ccgtgaagac ggtcatccgc
     1921 tctgtcagga tcctgaagtt cctggtagcc aaaaggaaat tcaaggagac gctacgacca
     1981 tacgacgtga aggacgtcat cgagcagtac tcagcagggc acctggacat gctgggccgg
     2041 atcaagagtc tgcaggcccg ggtggaccag attgtcggcc ggggccccgg ggaccggaag
     2101 tcccgggaga aggtcgacaa agggccctgc gacacggagg cggtggatga aatcagtatg
     2161 atgggacgcg tggtcaaggt ggagaagcag gtgcagtcca tcgagcacaa gctggacctg
     2221 ctgttgggct tctactcgcg ttgcctgcgc tctggcacct cagccagcct gggcaccgtg
     2281 caagtgccgc tcttcgaccc cgacatcacc tccgactacc acagccctgt ggaccacgag
     2341 gacatctccg tctccgcaca gacgctcagc atctcccgct cggtcagcac caacatggac
     2401 tgaggggctt ctcaggggcg gggtagcaca cggccagccc ctcggcctgg cgctcggacc
     2461 cgccctctga ggcctccgga ctcctctctt acttgaactc gctccctcgt ggggagagag
     2521 gccacacgca gtattgagct gcctgggtgg gcgagatacc cgatgtgggt gccagcgacc
     2581 cgccccacct caggagcgtg agatgccagg ccgcacggag ggcagcagcg gcggctgtcc
     2641 tgcggcctct gggcccccca gtgccctgcc cgttccatca aggcccgaca cggcccgccg
     2701 ggcaggggca ctgctccggg agtgggagcg gggcgctggg gccctgggcc ctgactcagc
     2761 ttccagctat gcaaggtgag gtctttggcc tgccctttgg acagagcagg gaagccttcc
     2821 ggccaagtcc ccgccccact tgggggtggg cccacggtgc ccatacaggt acccacaagc
     2881 acaggaccct gccgcaaggc aggtgggcac catatatgca aactatgtta aatatgcaac
     2941 tttggggacc cccatggggt ccctctgtcc ctcccccact gggagatggg cccccagcag
     3001 tagctggtct caggctgctt ggctatgacc cccatccctg ttctttggct tatcaactgc
     3061 tcacctccca gcatggggcc tctttctccc ttgcctccca aagggcagtg tctgggcctt
     3121 tcttcccatt tgcaggtgtc ccctcccagg ggctccctct tcctgccaat gttcactccc
     3181 ctctggccct agacaccttt gacagcacaa gtttctgtgt tctcccccca acctcccgta
     3241 gacaatgctc ccaaccgtca cacaaacatg tccctacagt tgccccagac atgcaggaag
     3301 tctctcacac tcgcgctgac acacacagtc acccacactt ggagacttga gcacagagcc
     3361 actcagcttt tcctgggcct ctgcagctga ggccagtgga ctggccttgc agggcaatgt
     3421 ccactcctac caactacgtc caggcaggag agggagctct gacgtgactc caggtctcca
     3481 gaactttacc agctcccctt tctcaagaag atctactcct cacaggtcca ggagccctaa
     3541 ctgctgcctc tgcctgcccc cgagggccct ccttagcgcc cccacagcac aactcaggcc
     3601 taggcctctg gggcctggac agcactggaa agaccaaagg cccttccgca gggtggttat
     3661 caggcccact tccatctagg cttgccctct tcctagttac tctaactcac tcccagagag
     3721 aataataagg catctagcga gtaccatttg tcaggaacca agtgcatacg gcgctcacat
     3781 gcactgtttc ccctccttcc atactccact tttcacttca gttggcagcc cccataccgc
     3841 ataagcctcc atccactcca ggcccccagc acctctttgg tatccctaac cctttgtccc
     3901 tcttctgcaa agccagtgca ggtggcagga gggtgatggg tagtggacca atggtgaccc
     3961 tttgtggggc accagggaat aagggtctca ggcccagctg cctgcatctc atgactgggg
     4021 acctgcatgc accagcgcca gggctggggt tggatcttgc tcagccccac ggtgcccagc
     4081 ctctgccccc acatgccctc tgcatgtgac cgtcatgccc tggatggagc ctatcctggc
     4141 tcacctcacc tgcactgcac tgtccccaga gagccacacc tccgccccct gagagacaga
     4201 gctgtggaga ggggcaggag aatgggatta ccctatgacc aaaggagact tgggaagaag
     4261 cccttcctgc ttccaccatc aaggttcccc accaacccgg ttctcggata tgcaagtacc
     4321 tcactttgtt aacttattaa cttattgatt tcattaaagt tttcagcagg a
//
LOCUS       XM_032614313            4209 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium voltage-gated channel subfamily
            Q member 4 (KCNQ4), transcript variant X2, mRNA.
ACCESSION   XM_032614313
VERSION     XM_032614313.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4209
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4209
                     /gene="KCNQ4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 27 Proteins, and 75%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744485"
     CDS             316..2241
                     /gene="KCNQ4"
                     /codon_start=1
                     /product="potassium voltage-gated channel subfamily KQT
                     member 4 isoform X2"
                     /protein_id="XP_032470204.1"
                     /db_xref="GeneID:116744485"
                     /translation="MAEAPPRRLGLAPLPADAPRAELVALTAVQSEQGEAGGGGSPRR
                     LGLLGSPLPPDAPLPGPGSGSGSACGQRSSAAYKRYRRLQNWVYNVLERPRGWAFVYH
                     VFIFLLVFSCLVLSVLSTIQEHQEIANECLLILEFVMIVVFGLEYIIRIWSAGCCCRY
                     RGWQGRFRFARKPFCVIDFIVFVASVAVIAAGTQGNIFATSALRSMRFLQILRMVRMD
                     RRGGTWKLLGSVVYAHSKELITAWYLGFLVLIFTSFLVYLAEKDANSDFSSYADSLWW
                     GTITLTTIGYGDKTPHTWLGRVLAAGFALIGVSFFALPAGILGSGFALKVQEQHRQKH
                     FEKRRMPAANLIQAAWRLYSTDTSRAYLTATWYYYDSILPSFNRRMGIKDRIRMGSSQ
                     RRTGPSKQHLAPPPMPTSPSSEQEGEASSPTKVQKSWSFNDRTRFRASLRLKPRASTE
                     EGPSEEVAEEKSYQCELTVDDVMPAVKTVIRSVRILKFLVAKRKFKETLRPYDVKDVI
                     EQYSAGHLDMLGRIKSLQARVDQIVGRGPGDRKSREKVDKGPCDTEAVDEISMMGRVV
                     KVEKQVQSIEHKLDLLLGFYSRCLRSGTSASLGTVQVPLFDPDITSDYHSPVDHEDIS
                     VSAQTLSISRSVSTNMD"
     misc_feature    607..1305
                     /gene="KCNQ4"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    1555..2094
                     /gene="KCNQ4"
                     /note="KCNQ voltage-gated potassium channel; Region:
                     KCNQ_channel; pfam03520"
                     /db_xref="CDD:460954"
ORIGIN      
        1 gacatgtgag cggcgcgccg gcggcaggtg gaaaggcgag cggcatggag cgcgtaataa
       61 gagagttgga gtcggaaaga gccgcccagt cgccggggaa gagggcggtc agcgcgggct
      121 ccggcggccc cccggctctg agcgcccgcc cccggccccg gagcggcccc ggcccggccc
      181 ctagcccccg ccgaccgcgc ccgcctcggg ccgcccagcc ggccctgggt ccgagacatg
      241 cgccgctgag cgcccctcgc gcgccccagc cccggaccgg acccgggccc cggccccccc
      301 cgcctggcgc cgcccatggc cgaggccccc ccgcgccgcc tcggcctagc ccccctgccc
      361 gcggacgccc cccgcgccga gctggtggcg ctcacggcgg tgcagagcga gcagggcgag
      421 gcgggcgggg gcggctcccc gcgccgcctg ggcctcctgg gcagccccct gccgccggac
      481 gcgcccctcc cagggccggg ctcgggctcg ggctccgcct gcggccagcg ctcctcggcc
      541 gcgtacaagc gctaccgacg cctgcagaac tgggtctaca acgtgctgga gcgaccccgc
      601 ggctgggcct tcgtctacca cgtcttcata tttttgctgg tcttcagctg cctggtgctg
      661 tccgtgctgt ccactatcca ggagcaccag gaaattgcca acgagtgtct ccttatcttg
      721 gaattcgtga tgatcgtggt gtttggtctg gagtacatca tccgcatctg gtccgcggga
      781 tgctgctgcc gctaccgagg atggcagggc cgtttccgct ttgccagaaa acccttctgt
      841 gtcatcgact tcatcgtgtt cgtggcctca gtggccgtca tcgccgccgg cacgcagggc
      901 aacatctttg ccacgtctgc gttgcgcagc atgcgcttcc tgcagatcct gcgcatggtg
      961 cgcatggacc gccgcggcgg cacctggaag ctgctgggct cggtggtcta cgctcacagc
     1021 aaggagctga tcaccgcctg gtacctcggg tttctggtgc tcatcttcac ctccttcctg
     1081 gtctatctgg ctgagaagga cgccaactcc gacttctcct cctacgccga ctcgctctgg
     1141 tgggggacga ttacactgac gaccattggc tatggtgaca agacaccaca cacgtggctg
     1201 ggcagggtcc tggctgctgg cttcgcctta ataggcgtct ccttctttgc cttgcctgcc
     1261 ggcatccttg gctccggctt tgccctgaag gtgcaggagc agcacaggca gaagcacttt
     1321 gagaagcgga ggatgccagc agccaacctc atccaggctg catggcgcct gtactccacc
     1381 gacacgagcc gggcctacct gacagccact tggtactact atgacagcat cctcccgtcc
     1441 ttcaacaggc ggatgggtat caaagaccgc atccgcatgg gcagctccca gcgacggaca
     1501 ggcccctcca agcagcacct agcacctcca ccgatgccca cttccccgag cagtgagcag
     1561 gagggggagg ccagcagccc caccaaggtg cagaagagct ggagcttcaa cgaccgcacc
     1621 cgcttccggg cctccctgag actcaaaccc cgtgcctcca ctgaggaggg cccctcagag
     1681 gaagtggcag aggagaagag ctaccagtgt gaactcacag tggacgatgt catgcccgcc
     1741 gtgaagacgg tcatccgctc tgtcaggatc ctgaagttcc tggtagccaa aaggaaattc
     1801 aaggagacgc tacgaccata cgacgtgaag gacgtcatcg agcagtactc agcagggcac
     1861 ctggacatgc tgggccggat caagagtctg caggcccggg tggaccagat tgtcggccgg
     1921 ggccccgggg accggaagtc ccgggagaag gtcgacaaag ggccctgcga cacggaggcg
     1981 gtggatgaaa tcagtatgat gggacgcgtg gtcaaggtgg agaagcaggt gcagtccatc
     2041 gagcacaagc tggacctgct gttgggcttc tactcgcgtt gcctgcgctc tggcacctca
     2101 gccagcctgg gcaccgtgca agtgccgctc ttcgaccccg acatcacctc cgactaccac
     2161 agccctgtgg accacgagga catctccgtc tccgcacaga cgctcagcat ctcccgctcg
     2221 gtcagcacca acatggactg aggggcttct caggggcggg gtagcacacg gccagcccct
     2281 cggcctggcg ctcggacccg ccctctgagg cctccggact cctctcttac ttgaactcgc
     2341 tccctcgtgg ggagagaggc cacacgcagt attgagctgc ctgggtgggc gagatacccg
     2401 atgtgggtgc cagcgacccg ccccacctca ggagcgtgag atgccaggcc gcacggaggg
     2461 cagcagcggc ggctgtcctg cggcctctgg gccccccagt gccctgcccg ttccatcaag
     2521 gcccgacacg gcccgccggg caggggcact gctccgggag tgggagcggg gcgctggggc
     2581 cctgggccct gactcagctt ccagctatgc aaggtgaggt ctttggcctg ccctttggac
     2641 agagcaggga agccttccgg ccaagtcccc gccccacttg ggggtgggcc cacggtgccc
     2701 atacaggtac ccacaagcac aggaccctgc cgcaaggcag gtgggcacca tatatgcaaa
     2761 ctatgttaaa tatgcaactt tggggacccc catggggtcc ctctgtccct cccccactgg
     2821 gagatgggcc cccagcagta gctggtctca ggctgcttgg ctatgacccc catccctgtt
     2881 ctttggctta tcaactgctc acctcccagc atggggcctc tttctccctt gcctcccaaa
     2941 gggcagtgtc tgggcctttc ttcccatttg caggtgtccc ctcccagggg ctccctcttc
     3001 ctgccaatgt tcactcccct ctggccctag acacctttga cagcacaagt ttctgtgttc
     3061 tccccccaac ctcccgtaga caatgctccc aaccgtcaca caaacatgtc cctacagttg
     3121 ccccagacat gcaggaagtc tctcacactc gcgctgacac acacagtcac ccacacttgg
     3181 agacttgagc acagagccac tcagcttttc ctgggcctct gcagctgagg ccagtggact
     3241 ggccttgcag ggcaatgtcc actcctacca actacgtcca ggcaggagag ggagctctga
     3301 cgtgactcca ggtctccaga actttaccag ctcccctttc tcaagaagat ctactcctca
     3361 caggtccagg agccctaact gctgcctctg cctgcccccg agggccctcc ttagcgcccc
     3421 cacagcacaa ctcaggccta ggcctctggg gcctggacag cactggaaag accaaaggcc
     3481 cttccgcagg gtggttatca ggcccacttc catctaggct tgccctcttc ctagttactc
     3541 taactcactc ccagagagaa taataaggca tctagcgagt accatttgtc aggaaccaag
     3601 tgcatacggc gctcacatgc actgtttccc ctccttccat actccacttt tcacttcagt
     3661 tggcagcccc cataccgcat aagcctccat ccactccagg cccccagcac ctctttggta
     3721 tccctaaccc tttgtccctc ttctgcaaag ccagtgcagg tggcaggagg gtgatgggta
     3781 gtggaccaat ggtgaccctt tgtggggcac cagggaataa gggtctcagg cccagctgcc
     3841 tgcatctcat gactggggac ctgcatgcac cagcgccagg gctggggttg gatcttgctc
     3901 agccccacgg tgcccagcct ctgcccccac atgccctctg catgtgaccg tcatgccctg
     3961 gatggagcct atcctggctc acctcacctg cactgcactg tccccagaga gccacacctc
     4021 cgccccctga gagacagagc tgtggagagg ggcaggagaa tgggattacc ctatgaccaa
     4081 aggagacttg ggaagaagcc cttcctgctt ccaccatcaa ggttccccac caacccggtt
     4141 ctcggatatg caagtacctc actttgttaa cttattaact tattgatttc attaaagttt
     4201 tcagcagga
//
LOCUS       XM_032614324            4762 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipase C eta 2 (PLCH2), mRNA.
ACCESSION   XM_032614324
VERSION     XM_032614324.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-124               VOSU01000011.1     1306550-1306673
            125-271             VOSU01000011.1     1308702-1308848
            272-514             VOSU01000011.1     1310622-1310864
            515-645             VOSU01000011.1     1311072-1311202
            646-816             VOSU01000011.1     1314478-1314648
            817-910             VOSU01000011.1     1316129-1316222
            911-1114            VOSU01000011.1     1316373-1316576
            1115-1235           VOSU01000011.1     1316855-1316975
            1236-1407           VOSU01000011.1     1318527-1318698
            1408-1515           VOSU01000011.1     1319093-1319200
            1516-1674           VOSU01000011.1     1320222-1320380
            1675-1740           VOSU01000011.1     1322669-1322734
            1741-1823           VOSU01000011.1     1323062-1323144
            1824-1921           VOSU01000011.1     1323513-1323610
            1922-2104           VOSU01000011.1     1323697-1323879
            2105-2212           VOSU01000011.1     1324247-1324354
            2213-2337           VOSU01000011.1     1325042-1325166
            2338-2422           VOSU01000011.1     1325246-1325330
            2423-2569           VOSU01000011.1     1325650-1325796
            2570-2649           VOSU01000011.1     1326199-1326278
            2650-2947           VOSU01000011.1     1328393-1328690
            2948-3780           VOSU01000011.1     1330145-1330977
            3781-3922           VOSU01000011.1     1330980-1331121
            3923-4762           VOSU01000011.1     1331407-1332246
FEATURES             Location/Qualifiers
     source          1..4762
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4762
                     /gene="PLCH2"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 Proteins, and 58% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744496"
     CDS             1..4500
                     /gene="PLCH2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: 1-phosphatidylinositol
                     4,5-bisphosphate phosphodiesterase eta-2"
                     /protein_id="XP_032470215.1"
                     /db_xref="GeneID:116744496"
                     /translation="MSVPWPFNPSRTKGMVACRAEALLWVGGSVAVSSRWQLGPLVER
                     CMSAMQAGTQMVKLRGSSKGLVRFYFLDEHRSCIRWRPSRKNEKAKISIDSVQEVSEG
                     RQSEVFQRFPDSSFDPSCCFSIYYGSHRESLDLVSPSGDEARTWVTGLRYLMAGIRDE
                     DSLARRQRTRDQWLKQTFDEADKNGDGSLSLGEVLQLLHKLNVNLPRQRVKQMFKEAD
                     TDDHQGTLGFEEFCAFYKMMSTRRDLYLLMLAYSEHKDHLDAADLQRFLEVEQKMTGV
                     TLESCRDIIEQFEPCPENKSKGTMGIDGFTNYTRSPAGDIFNPEHHHVHQDMTWPLSH
                     YFITSSHNTYLVGDQLMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTLTS
                     KILFKDVIETINKYAFVKNEYPVILSIENHCSVVQQKKMAQYLTDILGDKLDLSSVSS
                     EDATMLPSPQMLKGKILVKGKKLPANISEDAEEGEVSDEDSADEIDEDCKLLNGDAST
                     NLKRVENIAKRKLDSLMKEAKIRDCEDPSDFTASTLPPPGKLGHTAEAKKAVEAGTSR
                     QNGRLLAGSFSKRKKKSGKLKKAASVEEGDEGPDAQGGQSRGATRQKKTVKLSRALSD
                     LVKYTKSVGIHDVEMEVASSWQVSSFSETKAQQILQQKPAQYLRFNQHQLSRIYPSSY
                     RVDSSNYNPQPFWNTGCQMVALNYQSEGRMLQLNRAKFSANGSCGYVLKPQCMCQGVF
                     NPNSEDPLPGQLKKQLVLRIISGQQLPKPRDSMLGDRGEIIDPFVEVEVIGLPVDCSK
                     EQTRVVDDNGFNPMWEETLVFTVHMPEIALVRFLVWDHDPIGRDFIGQRTLAFSSMMP
                     GYRHVYLEGMEEASIFVHVAVSDISGKVKQALGLKGLFLRGPKPGSLDSHAAGRPPPR
                     PSVSQRLLRRTASAPSKSQKPGRKAFPELVLGPQDLGSEGEASDAAPSSPGPTPEAPA
                     LEELGGRSPRDAHPFSSLCSLETIAEEPAWGPGPPPPGAVSPSHTPGGPQCSAGPGTG
                     SASPRRAALGASGPLQLRTGSQGNAEPAPESRQSACHGGGPAGACKGVPGSQTDGRGH
                     PRALGHVLKRAKSEGQVPSESLGGRWPLARPRPVVSLDATGGDQLWQPLEPSSHCGSV
                     SSSSSLSSGDTVIDLSLHGLGLGLESLPGAPAGRLPLWPCLASAARLDLPAVTKSKSN
                     PNLQAAGQLPVGPNELQPRPLAPWPPWAHHLLVGLPDCTVAAKSKSLGDLTVDDVAPR
                     VESPGRGLGLAGERPAGRGAWLDALTEQLRRLTGFQQAGGITLPTTGGPAGEGAAGAP
                     GFLRRSSSRSQSHVRAIASRAQERQRLQGPRGSPEEERGTPEGACCVGQEGCGAVPAP
                     PRVPPTSCQVLPPLASCCSPGLGGARVCLRCGAAAPRLPPVRCGCAPWPCPSSWEEGA
                     RPGAGQSFHDLLRSTYTDRYLNFQRQSFYNEKMVPCPFPLSPGLSCGACVGARLPGPA
                     MRGAQ"
     misc_feature    145..465
                     /gene="PLCH2"
                     /note="Phospholipase C-eta (PLC-eta) pleckstrin homology
                     (PH) domain; Region: PH_PLC_eta; cd13364"
                     /db_xref="CDD:270170"
     misc_feature    order(160..162,166..168,196..198,247..249,412..414)
                     /gene="PLCH2"
                     /note="putative Rac1 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:270170"
     misc_feature    order(169..171,175..177,187..189,193..195,199..201,
                     244..249)
                     /gene="PLCH2"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270170"
     misc_feature    517..939
                     /gene="PLCH2"
                     /note="EF-hand motif found in phosphoinositide
                     phospholipase C eta 2 (PI-PLC-eta2); Region:
                     EFh_PI-PLCeta2; cd16221"
                     /db_xref="CDD:320051"
     misc_feature    517..606
                     /gene="PLCH2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320051"
     misc_feature    625..717
                     /gene="PLCH2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320051"
     misc_feature    727..813
                     /gene="PLCH2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320051"
     misc_feature    838..939
                     /gene="PLCH2"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320051"
     misc_feature    973..2169
                     /gene="PLCH2"
                     /note="Catalytic domain of metazoan
                     phosphoinositide-specific phospholipase C-eta2; Region:
                     PI-PLCc_eta2; cd08633"
                     /db_xref="CDD:176570"
     misc_feature    order(1021..1026,1111..1113,1117..1119,1156..1158,
                     1258..1260,1405..1407,1411..1413,1945..1947,2026..2028,
                     2032..2034)
                     /gene="PLCH2"
                     /note="putative active site [active]"
                     /db_xref="CDD:176570"
     misc_feature    order(1021..1023,1156..1158)
                     /gene="PLCH2"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176570"
     misc_feature    order(1024..1026,1111..1113,1117..1119,1258..1260)
                     /gene="PLCH2"
                     /note="putative Ca binding site [ion binding]; other site"
                     /db_xref="CDD:176570"
     misc_feature    2257..2634
                     /gene="PLCH2"
                     /note="C2 domain present in Phosphoinositide-specific
                     phospholipases C (PLC); Region: C2_PLC_like; cd00275"
                     /db_xref="CDD:175974"
     misc_feature    order(2344..2346,2416..2418,2503..2505,2509..2511,
                     2524..2526,2530..2532)
                     /gene="PLCH2"
                     /note="Ca2+ binding pocket [ion binding]; other site"
                     /db_xref="CDD:175974"
     misc_feature    <2674..3798
                     /gene="PLCH2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 atgtctgtcc cctggccatt taaccccagc cggaccaagg gaatggtggc ctgccgggcg
       61 gaggccctcc tctgggtcgg cggcagcgtg gctgtgtcct cgcggtggca gcttggccca
      121 ctagtggagc gatgtatgag tgccatgcag gcggggacac agatggtgaa gctccgtggc
      181 agctccaagg gcctggtccg cttctacttc ctggatgaac accgctcctg catccgctgg
      241 cggccctcac gcaagaatga gaaggccaag atctccatcg actccgtcca ggaggtgagc
      301 gaggggcggc agtcagaggt cttccagcgc ttccccgaca gcagcttcga ccccagctgc
      361 tgcttcagca tctactacgg cagccaccga gagtcgctgg acctggtctc gcccagcggc
      421 gacgaggcgc gcacctgggt caccggcctg cgctacctca tggctggcat ccgtgacgag
      481 gacagcctgg cccgccgcca gcgcacccgg gaccagtggc tgaagcagac gtttgacgag
      541 gccgacaaga acggcgacgg cagcctgagc ctcggggagg tcctgcagct gctgcacaag
      601 ctcaacgtga acctgccacg gcagagggtg aagcagatgt tcaaggaagc agacacagat
      661 gaccaccagg ggacactggg cttcgaggag ttctgtgcct tctacaagat gatgtccacc
      721 cgccgggacc tctacctgct catgctggcc tacagcgagc acaaagacca cctggacgcc
      781 gccgacctgc agcgcttcct agaggtggag cagaagatga cgggcgtgac cctcgagagc
      841 tgccgtgaca tcatcgagca gtttgagccc tgcccagaga acaagagtaa ggggaccatg
      901 ggcattgacg gtttcaccaa ctacactcgg agccctgctg gcgacatctt caacccggag
      961 caccaccacg tacaccagga catgacgtgg ccgctgagcc actacttcat cacctcgtct
     1021 cacaacacct acctcgtggg cgaccagctc atgtcccagt cgagggtgga catgtacgcc
     1081 tgggtcctgc aggccggctg ccgctgcgtg gaggtggact gctgggatgg gcctgacggg
     1141 gagcccatcg tgcaccatgg ctacactctg acctccaaga tcctcttcaa agacgtcatt
     1201 gaaaccatca acaaatacgc ttttgtcaag aacgagtatc cagtgatcct gtccattgag
     1261 aaccactgca gtgtcgtcca gcagaagaag atggcccagt atctgaccga catccttggg
     1321 gacaagctgg acttgtcatc agtaagcagc gaggatgcca ccatgctacc ctctccacag
     1381 atgctcaagg gcaagatcct ggtgaagggc aagaagctcc cagccaacat cagcgaggat
     1441 gctgaggagg gcgaggtgtc tgatgaggac agcgcagacg agatcgatga ggactgcaag
     1501 ctcctcaacg gggatgcctc caccaatctg aagcgtgtgg aaaacattgc caagaggaaa
     1561 ctggattccc taatgaagga ggcgaagatt cgggactgcg aagaccccag tgacttcacc
     1621 gcgtccacgc tgcccccgcc tggcaaactc gggcacacgg cagaggccaa aaaggccgtg
     1681 gaggccggaa ccagcagaca gaacggccgc ctcctcgcgg gcagcttctc gaagcgcaag
     1741 aaaaagagcg gcaagctgaa gaaggcggcc agcgtggagg agggggacga gggcccggat
     1801 gcccagggcg gccagagccg aggggccacc cggcagaaga agaccgtgaa gctgtcccgg
     1861 gccctctcag acctggtcaa atacaccaag tctgtgggca tccacgacgt ggagatggag
     1921 gtggcgtcca gctggcaggt gtcttccttc agcgagacca aggcccagca gatcctgcag
     1981 cagaagccgg ctcagtacct gcgcttcaac cagcaccagc tctctcgcat ctacccctcc
     2041 tcctaccgcg tggattccag caactacaac ccacagccct tctggaatac cggctgccag
     2101 atggtcgccc tgaactacca gtcggagggg cggatgctcc agctgaaccg ggccaagttc
     2161 agcgccaacg gcagctgtgg ctacgtgctc aagccccagt gcatgtgcca gggcgtcttc
     2221 aaccccaact ccgaggaccc tttgcccggt cagctcaaga agcagctggt gcttcggatc
     2281 atcagtggac agcagctccc caagccgcgg gactccatgc tgggggaccg aggggagatc
     2341 atcgacccct tcgtggaggt ggaggtcatt gggctccccg tggactgcag caaggagcag
     2401 acgcgcgtgg tggacgacaa cggattcaac cccatgtggg aggagaccct ggtgttcacg
     2461 gtgcacatgc ctgagatagc gctggtgcgc ttcctcgtct gggaccacga ccccatcggg
     2521 cgtgacttca taggtcagag gacgctggcc ttcagcagca tgatgccagg ctatcggcac
     2581 gtgtacctgg aggggatgga agaggcctcc atctttgtcc acgtggccgt cagtgacatc
     2641 agtggtaagg tcaagcaggc tctgggccta aaaggcctgt tcctccgagg cccaaagccc
     2701 ggctccctgg acagtcatgc tgctgggcgg cccccgcccc ggccctctgt tagccagcgg
     2761 ctcctgcggc gcacggccag cgccccaagc aagagtcaga agccaggccg caaggccttc
     2821 ccagagctgg tcctgggccc gcaggacctg ggctctgagg gggaggccag cgacgcggca
     2881 ccttccagcc ccggccccac tcccgaggcc ccggccctgg aggagctggg cggccgcagc
     2941 cctcgagacg cccacccctt ctcctccctg tgcagcctgg aaaccattgc cgaggagcca
     3001 gcctggggtc ctggcccccc accgccgggg gccgtctccc ccagccacac ccctggaggg
     3061 ccccagtgct ctgcggggcc cggcaccggc tcggcgagcc cccgaagggc ggctctggga
     3121 gcttccgggc ccctccagct caggaccggg agccaaggga acgctgagcc agcccccgaa
     3181 agcaggcagt cggcgtgcca cggcgggggc cctgctgggg cctgcaaggg ggtccccggt
     3241 agccagacgg acggcagggg ccacccccgg gctctgggcc acgtgcttaa aagggccaag
     3301 agcgaggggc aggtcccctc ggagtccctg ggtggacggt ggcccctggc caggccccgc
     3361 cccgtcgtgt ccttggacgc cactggcggt gaccagctat ggcagccgct ggagccaagc
     3421 agccactgtg gcagcgtgtc ctcgtcctcc agcctgtcgt ctggtgacac ggtcatcgac
     3481 ctctccctgc acggcctggg cttgggactt gagagcctcc cgggggcccc ggcgggacgc
     3541 ctgcccctgt ggccctgctt ggcctcggcc gcccgcctgg acctgcccgc tgtgaccaag
     3601 agcaaatcca accccaacct gcaggctgct ggccagctgc ctgtggggcc taacgagctg
     3661 cagccccgcc ccctggcccc atggccaccc tgggcccacc acctcctggt gggcctcccg
     3721 gactgcactg tggctgccaa gtccaagagc ctcggggacc tgaccgtgga cgacgttgcc
     3781 ccccgcgtgg agagcccggg ccgcggcctg ggcctggctg gggagaggcc ggcagggcgg
     3841 ggggcgtggc tggacgccct gacggagcag ctgcgcaggc tcacggggtt ccagcaggct
     3901 gggggcatca cgttgcccac cacggggggc ccggctgggg agggggcagc gggggccccg
     3961 ggcttcctgc ggcgttcctc ctcccgcagc cagagccatg tgcgcgccat cgccagccgg
     4021 gcccaggagc ggcagcggct gcagggcccg aggggctccc cagaggagga gcggggcacc
     4081 cctgagggcg cctgctgcgt gggccaagag ggctgtgggg ctgtgccggc cccgccaagg
     4141 gtgccaccaa ccagctgtca ggtgctgccg ccactggcct cctgctgcag cccagggctg
     4201 ggcggggccc gcgtttgctt aagatgcgga gctgccgccc cgaggctgcc gcctgtccgg
     4261 tgtggctgtg ccccttggcc ctgcccctcc tcctgggagg aaggagcccg ccctggggca
     4321 gggcagagtt ttcacgacct tttaagatcc acttacacag acagatactt aaattttcag
     4381 aggcaaagct tctacaatga gaaaatggta ccgtgtcctt ttccactttc ccccggtctc
     4441 agctgcgggg cgtgtgtggg cgcgcgtctg ccgggccccg ccatgcgagg cgcccagtga
     4501 cctggagcgt ggcctccccg ccccgactgc tggcttgttc tgcacacact ctgctctgta
     4561 cgggacgttg tagactcttg taaactcccg aacacagctc caataaacac gcttgcgctt
     4621 gttccgagtg ggctccctct gtggccgcgt acccggtgtc gcggggccgg aacccagaag
     4681 atgcccccca ccctctgccc gcggatggct tggctggacc gcacccaggg tcagggccac
     4741 aagccccgaa cacacccctg tt
//
LOCUS       XM_032614335            5963 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BTB domain containing 8 (BTBD8), mRNA.
ACCESSION   XM_032614335
VERSION     XM_032614335.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5963
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5963
                     /gene="BTBD8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 4
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116744504"
     CDS             143..5560
                     /gene="BTBD8"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 8"
                     /protein_id="XP_032470226.1"
                     /db_xref="GeneID:116744504"
                     /translation="MARRGEDSVAPMVLLESPGVCSKGLQRKGPSERRRLKAMVSEQL
                     SQDLLRLLREEVHTDVTFSIGCTLFKAHKAVLLARVPDFCFHTVGHTNNLTNHEPVAV
                     ENFEASEFRIFLQIVYSSNRNIKNYEEEILRKKIVESGAPQKKCDFSVGKCTDNDGRS
                     SVGKRSSDHSFMKHEIPEDNNKEDIPEDNNKEDNLISTDIYDLEPASELGEDLLKLYV
                     KQCCPDIDIYVDGKSFKAHRAILSARSSYFAAMLSGCWAESSQEYITLQGISHVEMNV
                     LIHFIYGGTLDFPDKANVGHILNMADMYGLEGLKEVAIYILRRDYCNFFQKPVPRRLA
                     SILECLIIAHSVGVESLFADCMKWIVKHFARFWSERSFANVPPEIQKSCLNMLIQSLN
                     DKNAAFLLMESDRLIISLPRVKWTEAALTMASQLQEECIAFIIENFSKIIQSENFALL
                     LQSQAMSSTSDLLDKILKAIEENITTENSCSLLTALDTLLNSDSTKEMGFTCKIQALR
                     DKLWIFLVQSFYAVRHTESWKLMSTDDQQKIQAAAFDKGDDRRLGKKPIFSSSQQRRQ
                     VSDPGAIKNKSWRESNKKEYWSYPSTNNQKMKSDGLGASGHSSSTNRNSINKTLKHDD
                     LKEKDGTKTASKSTKELKTVGKNVSGKPKPIIKPKTENGDNAKSANMSPRQVVERSAA
                     AAANGQKNSVNGKGVRNQEGQITGARPKVLTGNLNVHAKAKPSKKVTGKDSPCLRISG
                     PSSRSTNSSMELRTSTDCLDEPKENGSIKEKASGHKFSLCDSPGQTVKNSVESIKTST
                     VAVKSRPVSKVTNGTSNKKSIHEQETNINNSVLKKVTSKGYSDPVPQAILKKRGNGNG
                     CATAQQRTKNATVNLAKTQGSQGESPHSVKSSGSSRQSDENVTKLDHSVTTDKQTPKR
                     KIVKQGQTTSPKISAKMVAMPKNLNQSKKGETLNNKDSKQKTLPGQVILKTQPSSLRP
                     LKSVVQKSVLRDVCDNNNKGNVSEQKPHDPLINLTAEISDTEACRSPRILDPQKPLNN
                     QEKEKLVLECQNISNLDKLIKHELESKQICSDKSETNFSGHKKTDQCNTVKIHCHSDE
                     SDNVDPEFYSTTALKSMISNPNENSLNSNSVCDLDSTNVEQVHSVSAREKQAGRKDTN
                     KKLNIKCVKDVLPCVPEQTNGTLNSGQDDRKSRIHVEEQTIPHQFSDDSAMNGDKHAT
                     VDSNTSSKCFLEQIPGKNSPKDMETTETPESHETPEAPFMSHWNLSTSVLHQRESPES
                     DSGSATTSSDDIKPRSEDYDAGGSQDDDGSNDRGISKCGTMLCHDFLGRSSSDTSTPE
                     ELKIYDSNLRIEVKMKKQSSNDLFQVNSTSDDEIPRKRPEIWSRSTRVHPREKENIPR
                     GSIQFAQEVDQVSSSADETEDERSEAENVAENFSTSNPALQQFQGIINLAFEDATENE
                     SHEFRATKDFKRSVLLSVDECEELGSDEGEVHAPFQPSVDSPSPSDVFDGVSHEPHGR
                     VCYSRYSQGSKGSILECRQEKANSVYKNKSSPLGLSSIDSSRKDKQSASATEKKSTTD
                     VLSRGGRQLPPEDKKVNSGSNVVNDFQPRSKLSDSDIKSQERPCHLELHQRDPNSDIP
                     KNSSTKSLDSYWSQVLPPEGQVKESHSAATKKANIALSAGDIDDCDTVAQNYMYDHRP
                     SKTLSPIYEMDVTEAFEQKMESETHVTDMDFEDEQHFAKQDWTLLKQLLSEEDSNLNI
                     TNSIPEDLNLAQYLINQTLLLARDSSKPQGKAHVDTLNRWSELTSPFDDSSASITMAS
                     FSSEDCSPQGGWTILELETQH"
     misc_feature    269..577
                     /gene="BTBD8"
                     /note="first BTB (Broad-Complex, Tramtrack and Bric a
                     brac)/POZ (poxvirus and zinc finger) domain found in
                     BTB/POZ domain-containing protein 8 (BTBD8); Region:
                     BTB1_POZ_BTBD8; cd18285"
                     /db_xref="CDD:349594"
     misc_feature    758..1120
                     /gene="BTBD8"
                     /note="second BTB (Broad-Complex, Tramtrack and Bric a
                     brac)/POZ (poxvirus and zinc finger) domain found in
                     BTB/POZ domain-containing protein 8 (BTBD8); Region:
                     BTB2_POZ_BTBD8; cd18286"
                     /db_xref="CDD:349595"
     misc_feature    1139..1327
                     /gene="BTBD8"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     BTB/POZ domain-containing protein 8 (BTBD8); Region:
                     BACK_BTBD8; cd18490"
                     /db_xref="CDD:350565"
     misc_feature    <1412..1576
                     /gene="BTBD8"
                     /note="BACK (BTB and C-terminal Kelch) domain; Region:
                     BACK; cl28903"
                     /db_xref="CDD:475122"
     misc_feature    5423..5557
                     /gene="BTBD8"
                     /note="Domain of unknown function (DUF4596); Region:
                     DUF4596; pfam15363"
                     /db_xref="CDD:464673"
ORIGIN      
        1 cgtgccggcg ctggccgggt ctccgagatt ctccgggact gaggttcggc agttataagg
       61 gaccgtcaac aaacagacaa gagaggcggg gaagtgagac cctgtaccga gcctgcgggg
      121 cgccgccgta cctttgtgga acatggcccg ccgtggggag gatagcgtgg cccccatggt
      181 acttctggag tcccctggag tttgcagtaa gggcttgcaa aggaaggggc ccagtgagcg
      241 gcgccggctg aaggcgatgg tgtcggagca gctcagccag gatctgctca ggcttctaag
      301 agaagaagtc catacagatg ttactttctc aataggttgt actttgttca aagcacacaa
      361 agcagtcctt ttagcaaggg ttcctgattt ctgttttcat actgttggac atacaaataa
      421 cttaacaaat catgaacctg ttgctgtgga gaactttgaa gcttcagaat ttagaatatt
      481 tttacagatt gtatactcat caaacagaaa cataaaaaac tatgaagagg aaattctcag
      541 gaaaaagata gtggagagtg gagcaccaca aaagaaatgt gactttagtg ttggaaagtg
      601 tactgacaat gatggaaggt catctgtagg taaaaggtca tctgatcatt cttttatgaa
      661 gcatgaaatt ccagaagata acaataaaga ggacattcca gaagataaca acaaagagga
      721 caatttaatt tccactgata tttatgactt ggaacctgca tctgaattag gagaagattt
      781 attgaagctt tatgtgaaac agtgttgccc agatattgat atttatgttg atggaaaaag
      841 ttttaaagct cacagagcca ttttaagtgc aagatctagt tattttgctg cgatgctgag
      901 tggctgttgg gctgaaagct cccaagagta cattactctt caagggataa gccatgtaga
      961 aatgaatgtt ttgatacatt ttatatatgg aggaactttg gactttccag acaaagctaa
     1021 tgttgggcac atactcaata tggctgatat gtatggacta gaaggattaa aagaagtagc
     1081 catctatatt ttaagaagag attactgtaa tttctttcag aagcctgttc ccagaaggtt
     1141 ggcatctata ttagaatgcc tgattattgc tcattcagtt ggagtggaaa gtctttttgc
     1201 tgactgcatg aagtggattg taaagcattt tgcaaggttt tggtctgaga gaagctttgc
     1261 gaatgtacct cctgagattc agaaaagttg tcttaatatg ttgattcagt ctttaaatga
     1321 taagaatgct gcttttcttc tgatggaaag tgacaggcta atcatcagtt tacccagagt
     1381 gaagtggaca gaagcagcac tgaccatggc atctcagctt caagaagaat gtattgcatt
     1441 tattatagaa aacttctcca agatcattca aagtgaaaat tttgctctcc tcttacagtc
     1501 acaagcaatg agtagcacat ctgatctgct ggacaaaatt ttaaaagcaa ttgaagaaaa
     1561 cattaccacg gagaatagtt gctctcttct tacagctctg gacacgttac tgaactctga
     1621 cagtacaaag gaaatgggtt ttacgtgcaa gatccaggct ctgcgtgata agctgtggat
     1681 cttcctggtt cagtctttct atgctgttcg tcacacagaa agctggaagc tgatgagcac
     1741 agatgatcaa cagaaaatcc aagcagctgc atttgacaaa ggtgatgacc gaagacttgg
     1801 caaaaagcct atattcagca gctctcagca aaggagacaa gtttctgacc ctggtgctat
     1861 aaaaaacaaa tcttggagag aaagtaacaa gaaagagtat tggagttatc cctctactaa
     1921 taatcaaaag atgaaatctg atggattagg agcatctgga cattcatcaa gtactaatag
     1981 aaattctata aataaaactt tgaagcatga tgatttaaag gaaaaggatg gtacaaaaac
     2041 cgcatccaag agtacaaaag aattaaaaac tgtgggaaaa aatgtttctg gaaagcccaa
     2101 acctataata aagcccaaaa cagaaaacgg tgataatgca aagtcagcaa acatgtcacc
     2161 tagacaagtt gtggaaagat cagcagcagc agcagcaaat ggacagaaaa attcagtaaa
     2221 tggaaaagga gtgagaaatc aggaaggtca aattacaggt gccagaccca aggtactcac
     2281 tgggaactta aacgtgcatg ccaaagcaaa gccttcgaag aaagtgacag gcaaagactc
     2341 tccatgcctc aggatttcag ggccctccag cagatctaca aattcaagta tggaattacg
     2401 gacttccact gactgtctgg atgaaccaaa agaaaatggg tcaataaaag agaaggcttc
     2461 tggtcataaa ttttcccttt gtgactctcc aggacagact gtgaaaaaca gtgtagaaag
     2521 tatcaaaact tccactgtag cagtaaaatc tcgacctgtt tcaaaagtta ccaatggaac
     2581 ttccaataaa aaaagcattc atgaacaaga aactaatata aataacagtg tgctaaagaa
     2641 ggtcaccagc aaaggataca gtgatccagt accacaggca attttaaaga aaagaggaaa
     2701 tggcaatgga tgtgctacag ctcagcagag gacaaagaat gccacagtta atcttgctaa
     2761 aactcaagga tcccaaggag agtcaccaca ttcagtaaaa tcttcagggt cttcaaggca
     2821 gtctgatgaa aatgtgacaa aattggacca cagtgtaact acagataaac aaacacctaa
     2881 gagaaaaatt gtcaagcaag gacaaacaac atcacctaag attagtgcaa aaatggtagc
     2941 aatgcctaaa aacctaaatc aatctaagaa aggtgaaact ttgaataata aggattcaaa
     3001 acagaaaaca cttcctggac aggttatatt gaagactcag ccttcttctc tgagaccttt
     3061 aaaaagtgtt gtccagaaaa gtgtgcttcg tgatgtatgt gataataata acaaaggcaa
     3121 tgtttctgaa cagaagcctc atgatcctct aattaatctc acagccgaaa tcagtgatac
     3181 agaagcatgt cggtcaccac gcatacttga cccacaaaag ccattaaaca atcaagaaaa
     3241 agagaagttg gtgttagaat gccaaaatat ttcaaatcta gataaattaa taaaacatga
     3301 actggaatca aaacagattt gttcagataa aagtgaaaca aatttttctg gtcacaaaaa
     3361 aacagatcaa tgcaacacag ttaaaataca ttgtcattct gatgagagtg ataatgtaga
     3421 tccagaattt tatagcacca ctgctctaaa atccatgatt tcaaatccaa atgaaaactc
     3481 tttgaactct aattcagttt gtgacctaga ctcaacaaat gtagagcaag tccattcagt
     3541 gtcagctagg gagaagcaag cagggagaaa agatacaaac aaaaaattaa acattaaatg
     3601 tgtgaaagat gttttacctt gtgttcctga acagacaaat ggtaccttaa attctggtca
     3661 agatgacaga aaatctagaa ttcatgtgga agaacagaca attccccatc agttttctga
     3721 tgactctgcc atgaatggag acaaacatgc tacagtagac tcaaatactt cctccaagtg
     3781 ttttttggaa caaataccag ggaaaaattc tcctaaagac atggaaacaa cagaaactcc
     3841 agagagccat gaaactccag aagctccatt catgagtcac tggaatttga gtaccagtgt
     3901 tctgcatcag agagagagtc ctgagtctga cagtggcagt gctacaacat cctctgatga
     3961 cataaagcct agatctgaag actatgatgc tggagggtct caggatgatg atgggtcaaa
     4021 tgacaggggt atttctaaat gtggcactat gctgtgccat gattttcttg gaagaagtag
     4081 cagtgacacc agtactcctg aagaattaaa aatatatgat agtaacttaa gaattgaagt
     4141 gaaaatgaaa aagcaaagta gtaatgatct tttccaagtt aattcgacaa gtgatgatga
     4201 gattcctagg aaaaggccag aaatttggtc tcgatctaca agagttcacc ctagggaaaa
     4261 agaaaatatt ccacgaggca gtatccagtt tgctcaggaa gtagatcagg tttcttcctc
     4321 agcagatgaa acagaagatg aaaggtctga agctgaaaat gttgcagaaa atttctctac
     4381 atctaaccca gctcttcagc agtttcaggg aataattaat ttagcttttg aagatgcaac
     4441 tgaaaatgaa agtcacgagt ttcgtgcaac taaagatttt aaaaggtcag ttttactttc
     4501 ggtagatgaa tgtgaagaac taggatctga tgaaggggaa gtccatgctc cctttcagcc
     4561 ttctgtagat tcgccttcac cttctgatgt ttttgatggt gtttctcatg aacctcacgg
     4621 aagggtctgc tactccagat actcacaagg aagtaaaggt agtattttag aatgtagaca
     4681 agagaaagcc aatagtgtat ataaaaacaa aagctctccc ttgggtctta gtagcattga
     4741 ctcttcaaga aaagataaac agagtgcttc agccacagaa aaaaagagca caacagatgt
     4801 cctgtccaga ggaggcagac agcttcctcc agaagataaa aaagtaaaca gtggaagcaa
     4861 tgtggttaat gactttcagc cacgcagcaa actttcagat agtgatataa aatctcaaga
     4921 aagaccatgt catctggaac ttcatcaaag agaccccaat tctgacatac caaagaacag
     4981 ctctacaaaa tctctggact cttattggag tcaagttctg cctccagaag gtcaagtgaa
     5041 agagagccat tctgcagcta ccaagaaagc taatattgct ttatctgcag gagacataga
     5101 tgattgtgac acagtggcac aaaactacat gtatgaccat cggccttcaa aaaccctctc
     5161 tccaatatat gagatggatg taacagaagc atttgagcag aaaatggaat cagaaacaca
     5221 tgttacggac atggattttg aagatgagca acactttgca aaacaagatt ggacgctatt
     5281 aaagcaactg ctctctgaag aggattcaaa cttaaatatt acaaattcta ttcctgaaga
     5341 cttaaattta gcacagtatc taatcaatca gacactactt ttagcacgag acagctcaaa
     5401 acctcagggt aaagcacatg ttgacacttt aaacagatgg agtgaactaa cgtctccatt
     5461 cgatgattcc tcagcaagca tcaccatggc tagtttttcc tctgaggatt gttcacccca
     5521 agggggatgg acaattctgg aactagaaac tcagcattaa gagtattaac actttggaaa
     5581 atgttaaact atgccacccc tttatttttt tgatgcttat attatatcca aatgataact
     5641 gcattagcct attagactat ccttaatatt gaggaagtct ttccaattta ctgaagtaaa
     5701 catagtttgt ttattaatat atcacatgta gaaaaaagtg tttttctaaa aatcttgagc
     5761 atgttttcta taattattag agaaattaga agacttgtaa ggaaaccctt gctttagttt
     5821 tcctttccta actgatcatt catttacttg tttatcattc aataatttaa aatgtgaatg
     5881 cacaagtaga acagtccctt tactttttgc tctgcatatg gtaaccataa tttaacaata
     5941 aaaaaactta ttgtgcttgt gtc
//
LOCUS       XM_032614347            1261 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus endothelin 2 (EDN2), mRNA.
ACCESSION   XM_032614347
VERSION     XM_032614347.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1261
                     /gene="EDN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744510"
     CDS             91..624
                     /gene="EDN2"
                     /codon_start=1
                     /product="endothelin-2"
                     /protein_id="XP_032470238.1"
                     /db_xref="GeneID:116744510"
                     /translation="MPTAWCSIALALLVALHEGKSQAAATHTPEQPAPLPHARGSHLR
                     PRRCSCSSWLDKECVYFCHLDIIWVNTPGQTAPYGLGNPPRRQRRSLPRRCECYSARD
                     PACATFCHQSPWTEAVAVPGSGSSAAVFQADKTWATSGELLQQLRDISTAQIRFARQQ
                     QKATREPRPTHSRWRKR"
     misc_feature    220..306
                     /gene="EDN2"
                     /note="Endothelin family; Region: Endothelin; pfam00322"
                     /db_xref="CDD:425606"
     misc_feature    373..435
                     /gene="EDN2"
                     /note="Endothelin; Region: END; smart00272"
                     /db_xref="CDD:197618"
ORIGIN      
        1 ctatcggctc agcttggcag caagtcgctg gcaacaggcg cgctgcctgc tccggtccag
       61 cctgctcact ctgccaccac cacggtcgcc atgcccaccg cctggtgctc catcgctcta
      121 gccctgctcg tggccctgca cgaaggcaag agccaggccg ctgccaccca caccccagag
      181 cagccagcgc ccttgcccca tgcccgaggc tcccacctgc ggcctcgccg ttgctcctgc
      241 agctcctggc tcgacaagga gtgcgtctac ttttgccacc tggacatcat ctgggtgaac
      301 actcccggac agacagctcc ttacggcctg ggaaacccgc caagacgcca gcgccgctct
      361 ctgccaaggc gctgtgaatg ctacagcgcc agggaccccg cctgtgccac cttctgccat
      421 caaagcccct ggactgaagc tgtggcagtc ccaggcagcg ggtcctctgc agccgtcttc
      481 caggctgaca agacatgggc cacatcagga gagctcctcc agcagctgag ggacatttct
      541 acagcccaga tccgctttgc taggcaacag cagaaagcaa caagggagcc caggcctaca
      601 cactccaggt ggaggaagag atagctctgg aagctggagg aactctggga agaaagcctg
      661 tgtggagccg ggaggagagg ggcatcctag ggctgggaga ccctccacct gtttcctggg
      721 ccaggaaacc cacctgctgg agttggtaca agctctggcc tcctcgccct gtggaggtgg
      781 cctccctcaa ggcagctcca tgccctcaca ttgcccggga aagccatcag cccccaggct
      841 gcagcccggc cccccatgct ggctctggcc cgacagccct gctgaaagga acggcgtggg
      901 gagtgcgcta acctggaggc cacattccaa gaggtgtcct ctctagtggc tacaaaccag
      961 gaatgatgtg tggtggtgga cgttcacaac taagccagct gtagaggctg gatgggtcta
     1021 tccaggactg aagtcccagt tgggccccgt ctgtcccctc cagctctccc tccccagagt
     1081 ccttgtaccc tcatacccgg ggacactcct gatgagaagg gcctggtctg cttcacctgt
     1141 ctgtatataa cttatttgct ctgagaactt tgaaaattct gattatttat tttaatgtat
     1201 ttttttagac tctcaattat ttacctgcga acttgtgttt gtaataaaca atgaaagggt
     1261 a
//
LOCUS       XM_032614359            1969 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NUF2 component of NDC80 kinetochore
            complex (NUF2), transcript variant X1, mRNA.
ACCESSION   XM_032614359
VERSION     XM_032614359.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1969
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1969
                     /gene="NUF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 8
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744519"
     CDS             267..1661
                     /gene="NUF2"
                     /codon_start=1
                     /product="kinetochore protein Nuf2 isoform X1"
                     /protein_id="XP_032470250.1"
                     /db_xref="GeneID:116744519"
                     /translation="METLSFPRYNVAEIVVHIRNKILTGADGKNLSKNDLSPNPKPEV
                     LHMIYMRALQIVYGIRLEHFYMMPVNSEVMYPHIMEGFLPVSNLFINLDSFLPICRVN
                     DFEIADILYPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSVDKMQQLNTAHQ
                     EAIMKLERLDSVPVEEQAEFKQLSDDIQELQQSLNQEFRQKTIVLQEGNSQKKSDISE
                     KTKRLNELKLSVVSLKEVQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNSRQEVMEKY
                     EIYRDSVDCLPSCQLEVQLYQKKIQDLADNREKLTTILKESLNLEDKIESDESELKKL
                     KTEENSFKRLMIVKKEKLATAQFRINKKHEDVKQYKRTVIEDCNKVQEKRGAVYERVT
                     TINQEIQKIKFGIQQLKDAAEREKLKSQEIFLSLKAALEKYHEGIEKATEDCHTKIDE
                     KTAELKKKMFRIST"
     misc_feature    273..704
                     /gene="NUF2"
                     /note="Nuf2 family; Region: Nuf2; pfam03800"
                     /db_xref="CDD:461057"
     misc_feature    <669..>1379
                     /gene="NUF2"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 ggaacggggc gggagttcca gtaggaggcg gtaggtttga aaagtgacaa cggtcggtgt
       61 ttgctgattt ttgagttcgt ctgtagctgc tccgcggact cgcagccttc ctgtgggcgg
      121 ctggtgcgga tgtttagcaa cattctgggc ctgctaccca ccagattcca gtagcatcct
      181 cactgtagtc ctgacaacca aaagtgtctc caaagttgtg agaactactg ctctaggaga
      241 acacagacta acaggagact cccaagatgg aaactttgtc tttccccaga tataatgtag
      301 ctgaaattgt ggttcatatt cgaaacaaaa tcttaacagg agctgatggt aaaaacctct
      361 ccaagaatga tctttctcca aatcccaagc ctgaagtctt gcatatgatc tacatgagag
      421 ctttacagat agtatatgga attcgactgg agcattttta catgatgcca gtgaactctg
      481 aagtcatgta tccacatata atggaaggct tcttaccagt cagcaatctg tttattaatt
      541 tggactcatt tctgcccatc tgtcgggtga atgacttcga gattgctgat attctatatc
      601 caaaggcaaa acggacaagt cggtttttaa gtggcattat caattttatt cacttcagag
      661 aagcatgccg tgagacatac atggagtttc tttggcaata taaatcttct gtggacaaaa
      721 tgcagcagtt aaatactgca caccaggagg caataatgaa attggagaga cttgattctg
      781 ttccagttga agagcaagca gagttcaagc agctttcaga tgatattcag gagctgcagc
      841 agtcgctgaa tcaagagttt cgtcaaaaaa cgatagtgct gcaagaggga aattcacaaa
      901 agaagtcaga tatttcagaa aaaaccaagc gtttgaatga actaaaattg tcagtggttt
      961 ctttgaaaga agtacaagag agtttgaaaa caaaaattgt ggattctcca gagaagctta
     1021 agaattataa agaaaaaatg aaagatacag tccagaagct taagaattcc agacaagaag
     1081 tgatggaaaa gtatgaaatc tatcgagact ctgttgactg cctgccttca tgtcagctgg
     1141 aggtgcagct atatcaaaag aaaatacagg accttgcaga taatagggaa aaattaacca
     1201 ctatcttaaa ggagagcctg aacttagagg acaaaattga gagtgatgag tcagaactga
     1261 agaaattgaa gactgaagaa aattccttta aaagactgat gattgtgaag aaggaaaaac
     1321 ttgccacagc acagttcaga ataaataaga agcatgagga tgtcaagcag tacaaacgca
     1381 ctgtgattga agattgcaat aaagttcaag aaaaaagagg tgctgtctat gagcgagtaa
     1441 ccacaattaa tcaagaaatc caaaaaatta aatttggaat tcaacaacta aaagatgctg
     1501 ctgaaaggga gaaactgaag tctcaggaaa tatttctcag cttgaaagct gctttggaga
     1561 aataccatga aggcattgaa aaggcaacag aggactgtca cactaaaata gatgagaaaa
     1621 cagctgaact gaagaaaaag atgttcagaa tatcaacctg atgaataaaa ttacacgtct
     1681 ttttgtaaat agcttgccaa tttttaattt tatattcgga aagggaatag ttaagttgaa
     1741 gttaatggaa gcatcaaaag taccaaataa tgttggctca gttacttttt atatactttc
     1801 ataggttatt atcttgtaag ataatgcatt taatgtagac ttttgtggac ttaaaattaa
     1861 aatggcttgt gcagccatgc atgtctctac gctgctcctt gttgtaagtg gtggatggag
     1921 taaaacagaa ataattgcat ttgaaatata taatgtttct ctgttatta
//
LOCUS       XM_032614365            1958 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NUF2 component of NDC80 kinetochore
            complex (NUF2), transcript variant X2, mRNA.
ACCESSION   XM_032614365
VERSION     XM_032614365.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1958
                     /gene="NUF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744519"
     CDS             256..1650
                     /gene="NUF2"
                     /codon_start=1
                     /product="kinetochore protein Nuf2 isoform X1"
                     /protein_id="XP_032470256.1"
                     /db_xref="GeneID:116744519"
                     /translation="METLSFPRYNVAEIVVHIRNKILTGADGKNLSKNDLSPNPKPEV
                     LHMIYMRALQIVYGIRLEHFYMMPVNSEVMYPHIMEGFLPVSNLFINLDSFLPICRVN
                     DFEIADILYPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSVDKMQQLNTAHQ
                     EAIMKLERLDSVPVEEQAEFKQLSDDIQELQQSLNQEFRQKTIVLQEGNSQKKSDISE
                     KTKRLNELKLSVVSLKEVQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNSRQEVMEKY
                     EIYRDSVDCLPSCQLEVQLYQKKIQDLADNREKLTTILKESLNLEDKIESDESELKKL
                     KTEENSFKRLMIVKKEKLATAQFRINKKHEDVKQYKRTVIEDCNKVQEKRGAVYERVT
                     TINQEIQKIKFGIQQLKDAAEREKLKSQEIFLSLKAALEKYHEGIEKATEDCHTKIDE
                     KTAELKKKMFRIST"
     misc_feature    262..693
                     /gene="NUF2"
                     /note="Nuf2 family; Region: Nuf2; pfam03800"
                     /db_xref="CDD:461057"
     misc_feature    <658..>1368
                     /gene="NUF2"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 ttccagtagg aggcggtagg tttgaaaagt gacaacggtc ggtgtttgct gatttttgag
       61 ttcgtctgta gctgctccgc ggactcgcag ccttcctgtg ggcggctggt gcggtaggat
      121 gtttagcaac attctgggcc tgctacccac cagattccag tagcatcctc actgtagtcc
      181 tgacaaccaa aagtgtctcc aaagttgtga gaactactgc tctaggagaa cacagactaa
      241 caggagactc ccaagatgga aactttgtct ttccccagat ataatgtagc tgaaattgtg
      301 gttcatattc gaaacaaaat cttaacagga gctgatggta aaaacctctc caagaatgat
      361 ctttctccaa atcccaagcc tgaagtcttg catatgatct acatgagagc tttacagata
      421 gtatatggaa ttcgactgga gcatttttac atgatgccag tgaactctga agtcatgtat
      481 ccacatataa tggaaggctt cttaccagtc agcaatctgt ttattaattt ggactcattt
      541 ctgcccatct gtcgggtgaa tgacttcgag attgctgata ttctatatcc aaaggcaaaa
      601 cggacaagtc ggtttttaag tggcattatc aattttattc acttcagaga agcatgccgt
      661 gagacataca tggagtttct ttggcaatat aaatcttctg tggacaaaat gcagcagtta
      721 aatactgcac accaggaggc aataatgaaa ttggagagac ttgattctgt tccagttgaa
      781 gagcaagcag agttcaagca gctttcagat gatattcagg agctgcagca gtcgctgaat
      841 caagagtttc gtcaaaaaac gatagtgctg caagagggaa attcacaaaa gaagtcagat
      901 atttcagaaa aaaccaagcg tttgaatgaa ctaaaattgt cagtggtttc tttgaaagaa
      961 gtacaagaga gtttgaaaac aaaaattgtg gattctccag agaagcttaa gaattataaa
     1021 gaaaaaatga aagatacagt ccagaagctt aagaattcca gacaagaagt gatggaaaag
     1081 tatgaaatct atcgagactc tgttgactgc ctgccttcat gtcagctgga ggtgcagcta
     1141 tatcaaaaga aaatacagga ccttgcagat aatagggaaa aattaaccac tatcttaaag
     1201 gagagcctga acttagagga caaaattgag agtgatgagt cagaactgaa gaaattgaag
     1261 actgaagaaa attcctttaa aagactgatg attgtgaaga aggaaaaact tgccacagca
     1321 cagttcagaa taaataagaa gcatgaggat gtcaagcagt acaaacgcac tgtgattgaa
     1381 gattgcaata aagttcaaga aaaaagaggt gctgtctatg agcgagtaac cacaattaat
     1441 caagaaatcc aaaaaattaa atttggaatt caacaactaa aagatgctgc tgaaagggag
     1501 aaactgaagt ctcaggaaat atttctcagc ttgaaagctg ctttggagaa ataccatgaa
     1561 ggcattgaaa aggcaacaga ggactgtcac actaaaatag atgagaaaac agctgaactg
     1621 aagaaaaaga tgttcagaat atcaacctga tgaataaaat tacacgtctt tttgtaaata
     1681 gcttgccaat ttttaatttt atattcggaa agggaatagt taagttgaag ttaatggaag
     1741 catcaaaagt accaaataat gttggctcag ttacttttta tatactttca taggttatta
     1801 tcttgtaaga taatgcattt aatgtagact tttgtggact taaaattaaa atggcttgtg
     1861 cagccatgca tgtctctacg ctgctccttg ttgtaagtgg tggatggagt aaaacagaaa
     1921 taattgcatt tgaaatatat aatgtttctc tgttatta
//
LOCUS       XM_032614376            2012 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NUF2 component of NDC80 kinetochore
            complex (NUF2), transcript variant X3, mRNA.
ACCESSION   XM_032614376
VERSION     XM_032614376.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2012
                     /gene="NUF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744519"
     CDS             267..1553
                     /gene="NUF2"
                     /codon_start=1
                     /product="kinetochore protein Nuf2 isoform X2"
                     /protein_id="XP_032470267.1"
                     /db_xref="GeneID:116744519"
                     /translation="METLSFPRYNVAEIVVHIRNKILTGADGKNLSKNDLSPNPKPEV
                     LHMIYMRALQIVYGIRLEHFYMMPVNSEVMYPHIMEGFLPVSNLFINLDSFLPICRVN
                     DFEIADILYPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSVDKMQQLNTAHQ
                     EAIMKLERLDSVPVEEQAEFKQLSDDIQELQQSLNQEFRQKTIVLQEGNSQKKSDISE
                     KTKRLNELKLSVVSLKEVQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNSRQEVMEKY
                     EIYRDSVDCLPSCQLEVQLYQKKIQDLADNREKLTTILKESLNLEDKIESDESELKKL
                     KTEENSFKRLMIVKKEKLATAQFRINKKHEDVKQYKRTVIEDCNKVQEKRGAVYERVT
                     TINQEIQKIKFGIQQLKDAAEREKLKSQVSCYLFPP"
     misc_feature    273..704
                     /gene="NUF2"
                     /note="Nuf2 family; Region: Nuf2; pfam03800"
                     /db_xref="CDD:461057"
     misc_feature    <669..>1508
                     /gene="NUF2"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 ggaacggggc gggagttcca gtaggaggcg gtaggtttga aaagtgacaa cggtcggtgt
       61 ttgctgattt ttgagttcgt ctgtagctgc tccgcggact cgcagccttc ctgtgggcgg
      121 ctggtgcgga tgtttagcaa cattctgggc ctgctaccca ccagattcca gtagcatcct
      181 cactgtagtc ctgacaacca aaagtgtctc caaagttgtg agaactactg ctctaggaga
      241 acacagacta acaggagact cccaagatgg aaactttgtc tttccccaga tataatgtag
      301 ctgaaattgt ggttcatatt cgaaacaaaa tcttaacagg agctgatggt aaaaacctct
      361 ccaagaatga tctttctcca aatcccaagc ctgaagtctt gcatatgatc tacatgagag
      421 ctttacagat agtatatgga attcgactgg agcattttta catgatgcca gtgaactctg
      481 aagtcatgta tccacatata atggaaggct tcttaccagt cagcaatctg tttattaatt
      541 tggactcatt tctgcccatc tgtcgggtga atgacttcga gattgctgat attctatatc
      601 caaaggcaaa acggacaagt cggtttttaa gtggcattat caattttatt cacttcagag
      661 aagcatgccg tgagacatac atggagtttc tttggcaata taaatcttct gtggacaaaa
      721 tgcagcagtt aaatactgca caccaggagg caataatgaa attggagaga cttgattctg
      781 ttccagttga agagcaagca gagttcaagc agctttcaga tgatattcag gagctgcagc
      841 agtcgctgaa tcaagagttt cgtcaaaaaa cgatagtgct gcaagaggga aattcacaaa
      901 agaagtcaga tatttcagaa aaaaccaagc gtttgaatga actaaaattg tcagtggttt
      961 ctttgaaaga agtacaagag agtttgaaaa caaaaattgt ggattctcca gagaagctta
     1021 agaattataa agaaaaaatg aaagatacag tccagaagct taagaattcc agacaagaag
     1081 tgatggaaaa gtatgaaatc tatcgagact ctgttgactg cctgccttca tgtcagctgg
     1141 aggtgcagct atatcaaaag aaaatacagg accttgcaga taatagggaa aaattaacca
     1201 ctatcttaaa ggagagcctg aacttagagg acaaaattga gagtgatgag tcagaactga
     1261 agaaattgaa gactgaagaa aattccttta aaagactgat gattgtgaag aaggaaaaac
     1321 ttgccacagc acagttcaga ataaataaga agcatgagga tgtcaagcag tacaaacgca
     1381 ctgtgattga agattgcaat aaagttcaag aaaaaagagg tgctgtctat gagcgagtaa
     1441 ccacaattaa tcaagaaatc caaaaaatta aatttggaat tcaacaacta aaagatgctg
     1501 ctgaaaggga gaaactgaag tctcaggttt catgttattt atttccacct tgatttccaa
     1561 aatttcaagg aaatatttct cagcttgaaa gctgctttgg agaaatacca tgaaggcatt
     1621 gaaaaggcaa cagaggactg tcacactaaa atagatgaga aaacagctga actgaagaaa
     1681 aagatgttca gaatatcaac ctgatgaata aaattacacg tctttttgta aatagcttgc
     1741 caatttttaa ttttatattc ggaaagggaa tagttaagtt gaagttaatg gaagcatcaa
     1801 aagtaccaaa taatgttggc tcagttactt tttatatact ttcataggtt attatcttgt
     1861 aagataatgc atttaatgta gacttttgtg gacttaaaat taaaatggct tgtgcagcca
     1921 tgcatgtctc tacgctgctc cttgttgtaa gtggtggatg gagtaaaaca gaaataattg
     1981 catttgaaat atataatgtt tctctgttat ta
//
LOCUS       XM_032614388            3360 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 6C (SEMA6C), transcript
            variant X1, mRNA.
ACCESSION   XM_032614388
VERSION     XM_032614388.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3360
                     /gene="SEMA6C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744533"
     CDS             448..3246
                     /gene="SEMA6C"
                     /codon_start=1
                     /product="semaphorin-6C isoform X1"
                     /protein_id="XP_032470279.1"
                     /db_xref="GeneID:116744533"
                     /translation="MPREPRFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPL
                     SWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLT
                     WRSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEG
                     EELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDS
                     KWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRH
                     WTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAF
                     YLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDV
                     LTFIKAHPLLDPAVPPATHQPLLTFTSRALLTQVAVDGMAGPYSNTTVLFLGSNDGTV
                     LKVLPPWGQSGGPEPILLEEIDAYSPSRCSGKRAAQTARQVTGLELDTEGHRLFVAFS
                     GCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGIDVHPAGNQESME
                     HDDCQDGATGSQSGTGDSAYGVRRDLPAASVSRAVPIPLLLACVAAAFALGASVSGLL
                     VSCACRRAHRRRSKDIETAGLPRPLSLRSLARLHGAGPEPQPTSKDGGGAQTPQLYTT
                     FLPPPEGVPPPELACLPTPESTPELPVKHLRHAGGPWEWNQNGNNAKEGRGRARGGNT
                     AGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEVEPPAAAPFTSRALP
                     PEPAPTLFAGPCLLPRDCATPRRLDVPPEGKRPAPATRPALSAPAPRLGVGGSRRLPF
                     STHRAPPALLTRVPSGGPSRYSGGTGRHLLYLGRPEGHRGRALKRVDVEKPQVPLKPP
                     LVGPSSQSAVPSGNHFNF"
     misc_feature    604..1998
                     /gene="SEMA6C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1999..>2085
                     /gene="SEMA6C"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    <2776..3225
                     /gene="SEMA6C"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 agcttttgct aagaagcctg ctggattctg aaggttttaa tgtgggagtg gtcgtcatgc
       61 cctccaaact ctcccagtcc ccccttttcc caagactggt cctgcagttc caggagtttc
      121 tgggtagggg ccagccccag cccctgccct cacatctctg ggcatgaagc agccagcacc
      181 tttgtaatca ggctcaatgt caatgtgccc cccactccca gggcagcatc tctcctaccc
      241 tagcttcatt agacttctcc tgaatgttca cattcacttt tattggatgt ggtaaggagg
      301 tatagctcag cctcttccct ccttctgtcc cttcttccat caggtcagag gtctcctatc
      361 cccctcaaac ccccacagga gtcaccaccc cagggccagc atatgggtga gggggcaccc
      421 cctggggcct gagctgcccc acacaggatg ccccgtgagc cccgcttcat gcccttgctg
      481 ctactgctgt tgctgctctc acttccccac acccaggctg cctttcccca ggaccccctc
      541 cctctgctga cctctgacct gcaaggtatt tccccattat cctggttccg gggcctggag
      601 gatgacgctg tggttgcaga acttgggctg gactttcaga gattcctgac cttgaaccgg
      661 accttgctag tggctgcacg ggatcacgtt ttctccttcg atcttcaagc ccaagaagaa
      721 ggggaggggc tagtgcccaa caagtatcta acatggagga gtcaagacat ggagaactgt
      781 gccgtgcggg ggaagctgac ggacgagtgc tacaactaca ttcgtgttct cgttccctgg
      841 gactcccaga cactccttgc ctgtggaacg aactcattca gccccgtgtg ccgcagctat
      901 gggataactt cgctgcagca ggagggtgag gagctgagcg ggcaggctcg atgccccttt
      961 gatgccaccc agtccaacgt ggccgtcttt gcagagggca gcctgtattc agccacagcc
     1021 gcggatttcc aggccagtga tgctgtggtt tacagaagcc ttgggcctca gcccccactc
     1081 cgctccgcca agtacgactc caagtggctc cgagagccac actttgtcca cgctttggag
     1141 catggagacc atgtctactt cttcttccga gaagtctctg tggaggacgc ccggctgggg
     1201 agggtacagt tctcccgtgt ggcccgtgtg tgtaagcgtg acatgggcgg ctcacctcgg
     1261 gccttggacc gccactggac atctttcctg aagctgcggc tcaactgctc tgtccctggg
     1321 gactctacct tctattttga cgtcttacag gccttgacag ggcctgtgaa cttgtatggc
     1381 cgctctgctc tctttggggt cttcaccacc cagaccaata gcatccccgg ctctgcggtc
     1441 tgtgccttct acctggatga tattgagcgt gggtttgagg gaaagttcaa ggagcagaga
     1501 agtctggatg gggcctggac ccctgtgtct gaggacaggg tcccctcccc gaggccagga
     1561 tcctgtgcag gagtaggtgt agctgcattg ttcccctctt ctcgagacct ccctgatgat
     1621 gtcctgacct tcatcaaggc tcacccactc ctggaccctg ccgtgccacc tgccacccat
     1681 caacctctgc ttaccttcac cagcagggcc ctactgaccc aggtagctgt ggatggcatg
     1741 gctggtcctt acagtaatac cacagtcctg ttccttggct ccaacgatgg gacagtgctg
     1801 aaggtgctgc ccccatgggg gcaatctggg ggccctgagc ccattctgtt ggaagagatc
     1861 gatgcctaca gcccctcccg gtgcagtggg aagcgggcag cccaaacagc acggcaggtc
     1921 acagggctgg agctggacac tgaaggtcac aggctctttg tggctttttc tggctgtatc
     1981 atctacctcc ctctcagtcg atgtgcccgg catggggcct gtcggaggag ctgtctggct
     2041 tctcaggacc catactgtgg atgggacagc tccagaggct gtgtggatat caggggacct
     2101 ggtgggattg atgtgcatcc agctgggaac caggaatcca tggagcatga tgactgccaa
     2161 gatggagcta ctgggagtca gtctggcaca ggggattctg cttatggcgt gcgacgggac
     2221 ctcccggcag cctcagtctc ccgcgccgtc cctatcccac tcctcctggc ctgtgtggcc
     2281 gcagccttcg ccctgggcgc ctcggtctct ggcctcctgg tctcctgcgc ttgtcgccgc
     2341 gcccacagac gtcggagcaa ggatatcgag actgcggggc tcccgcgccc tctatccctt
     2401 cgcagcttgg cccgtctgca cggggcgggc ccagagccgc agccaacgtc caaggacgga
     2461 gggggcgcac agacacccca gctctacacc accttcctgc ctcctcctga gggcgtaccc
     2521 ccgccggagc tggcttgcct gcccaccccg gagtccacgc cggagctgcc ggtcaagcac
     2581 ctccgccacg ccgggggtcc ctgggagtgg aaccagaacg ggaacaacgc caaggagggc
     2641 cggggccgcg cccggggcgg gaacacggcg ggcggccccg cgccgcgcgt gctggtgaga
     2701 ccgccgccgc ccggctgtcc cgggcaggcc gtggaagtca ccaccctgga ggaactgctg
     2761 cgctatctgc acggcccgca gccgcccagg aaggaggtcg agcccccggc cgccgcccct
     2821 ttcacctcgc gggcgctgcc gcccgagccc gcccccaccc tctttgccgg cccctgcctg
     2881 ctcccccggg actgtgccac gcctcggagg ctggacgtgc ccccggaggg caagcgcccg
     2941 gcccccgcca cccggcctgc tctctccgcc ccagctcccc ggctcggggt gggcggcagc
     3001 cggaggttgc ccttctccac gcaccgtgca ccccccgcgc tgctcacccg agtcccttcg
     3061 ggaggcccct ccaggtactc cgggggtacc gggagacacc tcctgtacct gggccggcct
     3121 gaggggcacc ggggccgcgc cctgaagagg gtggatgtcg agaagcccca ggtgcccctg
     3181 aagcctcccc tcgtcgggcc ttcctcgcag tcggccgtcc ctagtggcaa ccattttaac
     3241 ttttaaaggg agctgctcca aggcctcaaa tggtaccctc gaggcccatg ccctcagagg
     3301 ccgtgagcgt ggacgcatct ccaaggacag atcacctccc tctctccttg ttccacacct
//
LOCUS       XM_032614396            3290 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 6C (SEMA6C), transcript
            variant X2, mRNA.
ACCESSION   XM_032614396
VERSION     XM_032614396.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3290
                     /gene="SEMA6C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744533"
     CDS             378..3176
                     /gene="SEMA6C"
                     /codon_start=1
                     /product="semaphorin-6C isoform X1"
                     /protein_id="XP_032470287.1"
                     /db_xref="GeneID:116744533"
                     /translation="MPREPRFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPL
                     SWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLT
                     WRSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEG
                     EELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDS
                     KWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRH
                     WTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAF
                     YLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDV
                     LTFIKAHPLLDPAVPPATHQPLLTFTSRALLTQVAVDGMAGPYSNTTVLFLGSNDGTV
                     LKVLPPWGQSGGPEPILLEEIDAYSPSRCSGKRAAQTARQVTGLELDTEGHRLFVAFS
                     GCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGIDVHPAGNQESME
                     HDDCQDGATGSQSGTGDSAYGVRRDLPAASVSRAVPIPLLLACVAAAFALGASVSGLL
                     VSCACRRAHRRRSKDIETAGLPRPLSLRSLARLHGAGPEPQPTSKDGGGAQTPQLYTT
                     FLPPPEGVPPPELACLPTPESTPELPVKHLRHAGGPWEWNQNGNNAKEGRGRARGGNT
                     AGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEVEPPAAAPFTSRALP
                     PEPAPTLFAGPCLLPRDCATPRRLDVPPEGKRPAPATRPALSAPAPRLGVGGSRRLPF
                     STHRAPPALLTRVPSGGPSRYSGGTGRHLLYLGRPEGHRGRALKRVDVEKPQVPLKPP
                     LVGPSSQSAVPSGNHFNF"
     misc_feature    534..1928
                     /gene="SEMA6C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1929..>2015
                     /gene="SEMA6C"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    <2706..3155
                     /gene="SEMA6C"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 ggagggtgga ctggggcggg cgaccagccc gagggcttcc tgctattgtc ccccgcccag
       61 tctccccttc tccatccctt ccccagcccc cgctagaatc tggctttgac ccgggccact
      121 ccccagaggt ggctgcgggg ccaggaggag acagaagggc tgtttcctct tcccagcaag
      181 gggagaacct aggaagggga gaaagagccg gccaggcctc ccccattcgc tccaaatggg
      241 gggtatgaag cagctgggat tggtcccggc agggtcagag gtctcctatc cccctcaaac
      301 ccccacagga gtcaccaccc cagggccagc atatgggtga gggggcaccc cctggggcct
      361 gagctgcccc acacaggatg ccccgtgagc cccgcttcat gcccttgctg ctactgctgt
      421 tgctgctctc acttccccac acccaggctg cctttcccca ggaccccctc cctctgctga
      481 cctctgacct gcaaggtatt tccccattat cctggttccg gggcctggag gatgacgctg
      541 tggttgcaga acttgggctg gactttcaga gattcctgac cttgaaccgg accttgctag
      601 tggctgcacg ggatcacgtt ttctccttcg atcttcaagc ccaagaagaa ggggaggggc
      661 tagtgcccaa caagtatcta acatggagga gtcaagacat ggagaactgt gccgtgcggg
      721 ggaagctgac ggacgagtgc tacaactaca ttcgtgttct cgttccctgg gactcccaga
      781 cactccttgc ctgtggaacg aactcattca gccccgtgtg ccgcagctat gggataactt
      841 cgctgcagca ggagggtgag gagctgagcg ggcaggctcg atgccccttt gatgccaccc
      901 agtccaacgt ggccgtcttt gcagagggca gcctgtattc agccacagcc gcggatttcc
      961 aggccagtga tgctgtggtt tacagaagcc ttgggcctca gcccccactc cgctccgcca
     1021 agtacgactc caagtggctc cgagagccac actttgtcca cgctttggag catggagacc
     1081 atgtctactt cttcttccga gaagtctctg tggaggacgc ccggctgggg agggtacagt
     1141 tctcccgtgt ggcccgtgtg tgtaagcgtg acatgggcgg ctcacctcgg gccttggacc
     1201 gccactggac atctttcctg aagctgcggc tcaactgctc tgtccctggg gactctacct
     1261 tctattttga cgtcttacag gccttgacag ggcctgtgaa cttgtatggc cgctctgctc
     1321 tctttggggt cttcaccacc cagaccaata gcatccccgg ctctgcggtc tgtgccttct
     1381 acctggatga tattgagcgt gggtttgagg gaaagttcaa ggagcagaga agtctggatg
     1441 gggcctggac ccctgtgtct gaggacaggg tcccctcccc gaggccagga tcctgtgcag
     1501 gagtaggtgt agctgcattg ttcccctctt ctcgagacct ccctgatgat gtcctgacct
     1561 tcatcaaggc tcacccactc ctggaccctg ccgtgccacc tgccacccat caacctctgc
     1621 ttaccttcac cagcagggcc ctactgaccc aggtagctgt ggatggcatg gctggtcctt
     1681 acagtaatac cacagtcctg ttccttggct ccaacgatgg gacagtgctg aaggtgctgc
     1741 ccccatgggg gcaatctggg ggccctgagc ccattctgtt ggaagagatc gatgcctaca
     1801 gcccctcccg gtgcagtggg aagcgggcag cccaaacagc acggcaggtc acagggctgg
     1861 agctggacac tgaaggtcac aggctctttg tggctttttc tggctgtatc atctacctcc
     1921 ctctcagtcg atgtgcccgg catggggcct gtcggaggag ctgtctggct tctcaggacc
     1981 catactgtgg atgggacagc tccagaggct gtgtggatat caggggacct ggtgggattg
     2041 atgtgcatcc agctgggaac caggaatcca tggagcatga tgactgccaa gatggagcta
     2101 ctgggagtca gtctggcaca ggggattctg cttatggcgt gcgacgggac ctcccggcag
     2161 cctcagtctc ccgcgccgtc cctatcccac tcctcctggc ctgtgtggcc gcagccttcg
     2221 ccctgggcgc ctcggtctct ggcctcctgg tctcctgcgc ttgtcgccgc gcccacagac
     2281 gtcggagcaa ggatatcgag actgcggggc tcccgcgccc tctatccctt cgcagcttgg
     2341 cccgtctgca cggggcgggc ccagagccgc agccaacgtc caaggacgga gggggcgcac
     2401 agacacccca gctctacacc accttcctgc ctcctcctga gggcgtaccc ccgccggagc
     2461 tggcttgcct gcccaccccg gagtccacgc cggagctgcc ggtcaagcac ctccgccacg
     2521 ccgggggtcc ctgggagtgg aaccagaacg ggaacaacgc caaggagggc cggggccgcg
     2581 cccggggcgg gaacacggcg ggcggccccg cgccgcgcgt gctggtgaga ccgccgccgc
     2641 ccggctgtcc cgggcaggcc gtggaagtca ccaccctgga ggaactgctg cgctatctgc
     2701 acggcccgca gccgcccagg aaggaggtcg agcccccggc cgccgcccct ttcacctcgc
     2761 gggcgctgcc gcccgagccc gcccccaccc tctttgccgg cccctgcctg ctcccccggg
     2821 actgtgccac gcctcggagg ctggacgtgc ccccggaggg caagcgcccg gcccccgcca
     2881 cccggcctgc tctctccgcc ccagctcccc ggctcggggt gggcggcagc cggaggttgc
     2941 ccttctccac gcaccgtgca ccccccgcgc tgctcacccg agtcccttcg ggaggcccct
     3001 ccaggtactc cgggggtacc gggagacacc tcctgtacct gggccggcct gaggggcacc
     3061 ggggccgcgc cctgaagagg gtggatgtcg agaagcccca ggtgcccctg aagcctcccc
     3121 tcgtcgggcc ttcctcgcag tcggccgtcc ctagtggcaa ccattttaac ttttaaaggg
     3181 agctgctcca aggcctcaaa tggtaccctc gaggcccatg ccctcagagg ccgtgagcgt
     3241 ggacgcatct ccaaggacag atcacctccc tctctccttg ttccacacct
//
LOCUS       XM_032614402            3258 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 6C (SEMA6C), transcript
            variant X3, mRNA.
ACCESSION   XM_032614402
VERSION     XM_032614402.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3258
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3258
                     /gene="SEMA6C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744533"
     CDS             448..3144
                     /gene="SEMA6C"
                     /codon_start=1
                     /product="semaphorin-6C isoform X2"
                     /protein_id="XP_032470293.1"
                     /db_xref="GeneID:116744533"
                     /translation="MPREPRFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPL
                     SWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLT
                     WRSQDMENCAVRGKLTITSLQQEGEELSGQARCPFDATQSNVAVFAEGSLYSATAADF
                     QASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVHALEHGDHVYFFFREVSVEDARLGR
                     VQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLY
                     GRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSP
                     RPGSCAGVGVAALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTFTSRALLTQV
                     AVDGMAGPYSNTTVLFLGSNDGTVLKVLPPWGQSGGPEPILLEEIDAYSPSRCSGKRA
                     AQTARQVTGLELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSS
                     RGCVDIRGPGGIDVHPAGNQESMEHDDCQDGATGSQSGTGDSAYGVRRDLPAASVSRA
                     VPIPLLLACVAAAFALGASVSGLLVSCACRRAHRRRSKDIETAGLPRPLSLRSLARLH
                     GAGPEPQPTSKDGGGAQTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHAG
                     GPWEWNQNGNNAKEGRGRARGGNTAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYL
                     HGPQPPRKEVEPPAAAPFTSRALPPEPAPTLFAGPCLLPRDCATPRRLDVPPEGKRPA
                     PATRPALSAPAPRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGTGRHLLYLGR
                     PEGHRGRALKRVDVEKPQVPLKPPLVGPSSQSAVPSGNHFNF"
     misc_feature    604..1896
                     /gene="SEMA6C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1897..>1983
                     /gene="SEMA6C"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    <2674..2973
                     /gene="SEMA6C"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 agcttttgct aagaagcctg ctggattctg aaggttttaa tgtgggagtg gtcgtcatgc
       61 cctccaaact ctcccagtcc ccccttttcc caagactggt cctgcagttc caggagtttc
      121 tgggtagggg ccagccccag cccctgccct cacatctctg ggcatgaagc agccagcacc
      181 tttgtaatca ggctcaatgt caatgtgccc cccactccca gggcagcatc tctcctaccc
      241 tagcttcatt agacttctcc tgaatgttca cattcacttt tattggatgt ggtaaggagg
      301 tatagctcag cctcttccct ccttctgtcc cttcttccat caggtcagag gtctcctatc
      361 cccctcaaac ccccacagga gtcaccaccc cagggccagc atatgggtga gggggcaccc
      421 cctggggcct gagctgcccc acacaggatg ccccgtgagc cccgcttcat gcccttgctg
      481 ctactgctgt tgctgctctc acttccccac acccaggctg cctttcccca ggaccccctc
      541 cctctgctga cctctgacct gcaaggtatt tccccattat cctggttccg gggcctggag
      601 gatgacgctg tggttgcaga acttgggctg gactttcaga gattcctgac cttgaaccgg
      661 accttgctag tggctgcacg ggatcacgtt ttctccttcg atcttcaagc ccaagaagaa
      721 ggggaggggc tagtgcccaa caagtatcta acatggagga gtcaagacat ggagaactgt
      781 gccgtgcggg ggaagctgac gataacttcg ctgcagcagg agggtgagga gctgagcggg
      841 caggctcgat gcccctttga tgccacccag tccaacgtgg ccgtctttgc agagggcagc
      901 ctgtattcag ccacagccgc ggatttccag gccagtgatg ctgtggttta cagaagcctt
      961 gggcctcagc ccccactccg ctccgccaag tacgactcca agtggctccg agagccacac
     1021 tttgtccacg ctttggagca tggagaccat gtctacttct tcttccgaga agtctctgtg
     1081 gaggacgccc ggctggggag ggtacagttc tcccgtgtgg cccgtgtgtg taagcgtgac
     1141 atgggcggct cacctcgggc cttggaccgc cactggacat ctttcctgaa gctgcggctc
     1201 aactgctctg tccctgggga ctctaccttc tattttgacg tcttacaggc cttgacaggg
     1261 cctgtgaact tgtatggccg ctctgctctc tttggggtct tcaccaccca gaccaatagc
     1321 atccccggct ctgcggtctg tgccttctac ctggatgata ttgagcgtgg gtttgaggga
     1381 aagttcaagg agcagagaag tctggatggg gcctggaccc ctgtgtctga ggacagggtc
     1441 ccctccccga ggccaggatc ctgtgcagga gtaggtgtag ctgcattgtt cccctcttct
     1501 cgagacctcc ctgatgatgt cctgaccttc atcaaggctc acccactcct ggaccctgcc
     1561 gtgccacctg ccacccatca acctctgctt accttcacca gcagggccct actgacccag
     1621 gtagctgtgg atggcatggc tggtccttac agtaatacca cagtcctgtt ccttggctcc
     1681 aacgatggga cagtgctgaa ggtgctgccc ccatgggggc aatctggggg ccctgagccc
     1741 attctgttgg aagagatcga tgcctacagc ccctcccggt gcagtgggaa gcgggcagcc
     1801 caaacagcac ggcaggtcac agggctggag ctggacactg aaggtcacag gctctttgtg
     1861 gctttttctg gctgtatcat ctacctccct ctcagtcgat gtgcccggca tggggcctgt
     1921 cggaggagct gtctggcttc tcaggaccca tactgtggat gggacagctc cagaggctgt
     1981 gtggatatca ggggacctgg tgggattgat gtgcatccag ctgggaacca ggaatccatg
     2041 gagcatgatg actgccaaga tggagctact gggagtcagt ctggcacagg ggattctgct
     2101 tatggcgtgc gacgggacct cccggcagcc tcagtctccc gcgccgtccc tatcccactc
     2161 ctcctggcct gtgtggccgc agccttcgcc ctgggcgcct cggtctctgg cctcctggtc
     2221 tcctgcgctt gtcgccgcgc ccacagacgt cggagcaagg atatcgagac tgcggggctc
     2281 ccgcgccctc tatcccttcg cagcttggcc cgtctgcacg gggcgggccc agagccgcag
     2341 ccaacgtcca aggacggagg gggcgcacag acaccccagc tctacaccac cttcctgcct
     2401 cctcctgagg gcgtaccccc gccggagctg gcttgcctgc ccaccccgga gtccacgccg
     2461 gagctgccgg tcaagcacct ccgccacgcc gggggtccct gggagtggaa ccagaacggg
     2521 aacaacgcca aggagggccg gggccgcgcc cggggcggga acacggcggg cggccccgcg
     2581 ccgcgcgtgc tggtgagacc gccgccgccc ggctgtcccg ggcaggccgt ggaagtcacc
     2641 accctggagg aactgctgcg ctatctgcac ggcccgcagc cgcccaggaa ggaggtcgag
     2701 cccccggccg ccgccccttt cacctcgcgg gcgctgccgc ccgagcccgc ccccaccctc
     2761 tttgccggcc cctgcctgct cccccgggac tgtgccacgc ctcggaggct ggacgtgccc
     2821 ccggagggca agcgcccggc ccccgccacc cggcctgctc tctccgcccc agctccccgg
     2881 ctcggggtgg gcggcagccg gaggttgccc ttctccacgc accgtgcacc ccccgcgctg
     2941 ctcacccgag tcccttcggg aggcccctcc aggtactccg ggggtaccgg gagacacctc
     3001 ctgtacctgg gccggcctga ggggcaccgg ggccgcgccc tgaagagggt ggatgtcgag
     3061 aagccccagg tgcccctgaa gcctcccctc gtcgggcctt cctcgcagtc ggccgtccct
     3121 agtggcaacc attttaactt ttaaagggag ctgctccaag gcctcaaatg gtaccctcga
     3181 ggcccatgcc ctcagaggcc gtgagcgtgg acgcatctcc aaggacagat cacctccctc
     3241 tctccttgtt ccacacct
//
LOCUS       XM_032614412            3228 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 6C (SEMA6C), transcript
            variant X4, mRNA.
ACCESSION   XM_032614412
VERSION     XM_032614412.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3228
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3228
                     /gene="SEMA6C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744533"
     CDS             448..3114
                     /gene="SEMA6C"
                     /codon_start=1
                     /product="semaphorin-6C isoform X3"
                     /protein_id="XP_032470303.1"
                     /db_xref="GeneID:116744533"
                     /translation="MPREPRFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPL
                     SWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLT
                     WRSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEG
                     EELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDS
                     KWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRH
                     WTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNRPGSCAGVGV
                     AALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTFTSRALLTQVAVDGMAGPYS
                     NTTVLFLGSNDGTVLKVLPPWGQSGGPEPILLEEIDAYSPSRCSGKRAAQTARQVTGL
                     ELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPG
                     GIDVHPAGNQESMEHDDCQDGATGSQSGTGDSAYGVRRDLPAASVSRAVPIPLLLACV
                     AAAFALGASVSGLLVSCACRRAHRRRSKDIETAGLPRPLSLRSLARLHGAGPEPQPTS
                     KDGGGAQTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHAGGPWEWNQNGN
                     NAKEGRGRARGGNTAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEV
                     EPPAAAPFTSRALPPEPAPTLFAGPCLLPRDCATPRRLDVPPEGKRPAPATRPALSAP
                     APRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGTGRHLLYLGRPEGHRGRALK
                     RVDVEKPQVPLKPPLVGPSSQSAVPSGNHFNF"
     misc_feature    604..1866
                     /gene="SEMA6C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1867..>1953
                     /gene="SEMA6C"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    <2644..3093
                     /gene="SEMA6C"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 agcttttgct aagaagcctg ctggattctg aaggttttaa tgtgggagtg gtcgtcatgc
       61 cctccaaact ctcccagtcc ccccttttcc caagactggt cctgcagttc caggagtttc
      121 tgggtagggg ccagccccag cccctgccct cacatctctg ggcatgaagc agccagcacc
      181 tttgtaatca ggctcaatgt caatgtgccc cccactccca gggcagcatc tctcctaccc
      241 tagcttcatt agacttctcc tgaatgttca cattcacttt tattggatgt ggtaaggagg
      301 tatagctcag cctcttccct ccttctgtcc cttcttccat caggtcagag gtctcctatc
      361 cccctcaaac ccccacagga gtcaccaccc cagggccagc atatgggtga gggggcaccc
      421 cctggggcct gagctgcccc acacaggatg ccccgtgagc cccgcttcat gcccttgctg
      481 ctactgctgt tgctgctctc acttccccac acccaggctg cctttcccca ggaccccctc
      541 cctctgctga cctctgacct gcaaggtatt tccccattat cctggttccg gggcctggag
      601 gatgacgctg tggttgcaga acttgggctg gactttcaga gattcctgac cttgaaccgg
      661 accttgctag tggctgcacg ggatcacgtt ttctccttcg atcttcaagc ccaagaagaa
      721 ggggaggggc tagtgcccaa caagtatcta acatggagga gtcaagacat ggagaactgt
      781 gccgtgcggg ggaagctgac ggacgagtgc tacaactaca ttcgtgttct cgttccctgg
      841 gactcccaga cactccttgc ctgtggaacg aactcattca gccccgtgtg ccgcagctat
      901 gggataactt cgctgcagca ggagggtgag gagctgagcg ggcaggctcg atgccccttt
      961 gatgccaccc agtccaacgt ggccgtcttt gcagagggca gcctgtattc agccacagcc
     1021 gcggatttcc aggccagtga tgctgtggtt tacagaagcc ttgggcctca gcccccactc
     1081 cgctccgcca agtacgactc caagtggctc cgagagccac actttgtcca cgctttggag
     1141 catggagacc atgtctactt cttcttccga gaagtctctg tggaggacgc ccggctgggg
     1201 agggtacagt tctcccgtgt ggcccgtgtg tgtaagcgtg acatgggcgg ctcacctcgg
     1261 gccttggacc gccactggac atctttcctg aagctgcggc tcaactgctc tgtccctggg
     1321 gactctacct tctattttga cgtcttacag gccttgacag ggcctgtgaa cttgtatggc
     1381 cgctctgctc tctttggggt cttcaccacc cagaccaata ggccaggatc ctgtgcagga
     1441 gtaggtgtag ctgcattgtt cccctcttct cgagacctcc ctgatgatgt cctgaccttc
     1501 atcaaggctc acccactcct ggaccctgcc gtgccacctg ccacccatca acctctgctt
     1561 accttcacca gcagggccct actgacccag gtagctgtgg atggcatggc tggtccttac
     1621 agtaatacca cagtcctgtt ccttggctcc aacgatggga cagtgctgaa ggtgctgccc
     1681 ccatgggggc aatctggggg ccctgagccc attctgttgg aagagatcga tgcctacagc
     1741 ccctcccggt gcagtgggaa gcgggcagcc caaacagcac ggcaggtcac agggctggag
     1801 ctggacactg aaggtcacag gctctttgtg gctttttctg gctgtatcat ctacctccct
     1861 ctcagtcgat gtgcccggca tggggcctgt cggaggagct gtctggcttc tcaggaccca
     1921 tactgtggat gggacagctc cagaggctgt gtggatatca ggggacctgg tgggattgat
     1981 gtgcatccag ctgggaacca ggaatccatg gagcatgatg actgccaaga tggagctact
     2041 gggagtcagt ctggcacagg ggattctgct tatggcgtgc gacgggacct cccggcagcc
     2101 tcagtctccc gcgccgtccc tatcccactc ctcctggcct gtgtggccgc agccttcgcc
     2161 ctgggcgcct cggtctctgg cctcctggtc tcctgcgctt gtcgccgcgc ccacagacgt
     2221 cggagcaagg atatcgagac tgcggggctc ccgcgccctc tatcccttcg cagcttggcc
     2281 cgtctgcacg gggcgggccc agagccgcag ccaacgtcca aggacggagg gggcgcacag
     2341 acaccccagc tctacaccac cttcctgcct cctcctgagg gcgtaccccc gccggagctg
     2401 gcttgcctgc ccaccccgga gtccacgccg gagctgccgg tcaagcacct ccgccacgcc
     2461 gggggtccct gggagtggaa ccagaacggg aacaacgcca aggagggccg gggccgcgcc
     2521 cggggcggga acacggcggg cggccccgcg ccgcgcgtgc tggtgagacc gccgccgccc
     2581 ggctgtcccg ggcaggccgt ggaagtcacc accctggagg aactgctgcg ctatctgcac
     2641 ggcccgcagc cgcccaggaa ggaggtcgag cccccggccg ccgccccttt cacctcgcgg
     2701 gcgctgccgc ccgagcccgc ccccaccctc tttgccggcc cctgcctgct cccccgggac
     2761 tgtgccacgc ctcggaggct ggacgtgccc ccggagggca agcgcccggc ccccgccacc
     2821 cggcctgctc tctccgcccc agctccccgg ctcggggtgg gcggcagccg gaggttgccc
     2881 ttctccacgc accgtgcacc ccccgcgctg ctcacccgag tcccttcggg aggcccctcc
     2941 aggtactccg ggggtaccgg gagacacctc ctgtacctgg gccggcctga ggggcaccgg
     3001 ggccgcgccc tgaagagggt ggatgtcgag aagccccagg tgcccctgaa gcctcccctc
     3061 gtcgggcctt cctcgcagtc ggccgtccct agtggcaacc attttaactt ttaaagggag
     3121 ctgctccaag gcctcaaatg gtaccctcga ggcccatgcc ctcagaggcc gtgagcgtgg
     3181 acgcatctcc aaggacagat cacctccctc tctccttgtt ccacacct
//
LOCUS       XM_032614422            3186 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 6C (SEMA6C), transcript
            variant X5, mRNA.
ACCESSION   XM_032614422
VERSION     XM_032614422.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3186
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3186
                     /gene="SEMA6C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744533"
     CDS             448..3072
                     /gene="SEMA6C"
                     /codon_start=1
                     /product="semaphorin-6C isoform X4"
                     /protein_id="XP_032470313.1"
                     /db_xref="GeneID:116744533"
                     /translation="MPREPRFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPL
                     SWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLT
                     WRSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEG
                     EELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDS
                     KWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRH
                     WTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAF
                     YLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDV
                     LTFIKAHPLLDPAVPPATHQPLLTFTSRCSGKRAAQTARQVTGLELDTEGHRLFVAFS
                     GCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGIDVHPAGNQESME
                     HDDCQDGATGSQSGTGDSAYGVRRDLPAASVSRAVPIPLLLACVAAAFALGASVSGLL
                     VSCACRRAHRRRSKDIETAGLPRPLSLRSLARLHGAGPEPQPTSKDGGGAQTPQLYTT
                     FLPPPEGVPPPELACLPTPESTPELPVKHLRHAGGPWEWNQNGNNAKEGRGRARGGNT
                     AGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEVEPPAAAPFTSRALP
                     PEPAPTLFAGPCLLPRDCATPRRLDVPPEGKRPAPATRPALSAPAPRLGVGGSRRLPF
                     STHRAPPALLTRVPSGGPSRYSGGTGRHLLYLGRPEGHRGRALKRVDVEKPQVPLKPP
                     LVGPSSQSAVPSGNHFNF"
     misc_feature    604..1824
                     /gene="SEMA6C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1825..>1911
                     /gene="SEMA6C"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    <2602..3051
                     /gene="SEMA6C"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 agcttttgct aagaagcctg ctggattctg aaggttttaa tgtgggagtg gtcgtcatgc
       61 cctccaaact ctcccagtcc ccccttttcc caagactggt cctgcagttc caggagtttc
      121 tgggtagggg ccagccccag cccctgccct cacatctctg ggcatgaagc agccagcacc
      181 tttgtaatca ggctcaatgt caatgtgccc cccactccca gggcagcatc tctcctaccc
      241 tagcttcatt agacttctcc tgaatgttca cattcacttt tattggatgt ggtaaggagg
      301 tatagctcag cctcttccct ccttctgtcc cttcttccat caggtcagag gtctcctatc
      361 cccctcaaac ccccacagga gtcaccaccc cagggccagc atatgggtga gggggcaccc
      421 cctggggcct gagctgcccc acacaggatg ccccgtgagc cccgcttcat gcccttgctg
      481 ctactgctgt tgctgctctc acttccccac acccaggctg cctttcccca ggaccccctc
      541 cctctgctga cctctgacct gcaaggtatt tccccattat cctggttccg gggcctggag
      601 gatgacgctg tggttgcaga acttgggctg gactttcaga gattcctgac cttgaaccgg
      661 accttgctag tggctgcacg ggatcacgtt ttctccttcg atcttcaagc ccaagaagaa
      721 ggggaggggc tagtgcccaa caagtatcta acatggagga gtcaagacat ggagaactgt
      781 gccgtgcggg ggaagctgac ggacgagtgc tacaactaca ttcgtgttct cgttccctgg
      841 gactcccaga cactccttgc ctgtggaacg aactcattca gccccgtgtg ccgcagctat
      901 gggataactt cgctgcagca ggagggtgag gagctgagcg ggcaggctcg atgccccttt
      961 gatgccaccc agtccaacgt ggccgtcttt gcagagggca gcctgtattc agccacagcc
     1021 gcggatttcc aggccagtga tgctgtggtt tacagaagcc ttgggcctca gcccccactc
     1081 cgctccgcca agtacgactc caagtggctc cgagagccac actttgtcca cgctttggag
     1141 catggagacc atgtctactt cttcttccga gaagtctctg tggaggacgc ccggctgggg
     1201 agggtacagt tctcccgtgt ggcccgtgtg tgtaagcgtg acatgggcgg ctcacctcgg
     1261 gccttggacc gccactggac atctttcctg aagctgcggc tcaactgctc tgtccctggg
     1321 gactctacct tctattttga cgtcttacag gccttgacag ggcctgtgaa cttgtatggc
     1381 cgctctgctc tctttggggt cttcaccacc cagaccaata gcatccccgg ctctgcggtc
     1441 tgtgccttct acctggatga tattgagcgt gggtttgagg gaaagttcaa ggagcagaga
     1501 agtctggatg gggcctggac ccctgtgtct gaggacaggg tcccctcccc gaggccagga
     1561 tcctgtgcag gagtaggtgt agctgcattg ttcccctctt ctcgagacct ccctgatgat
     1621 gtcctgacct tcatcaaggc tcacccactc ctggaccctg ccgtgccacc tgccacccat
     1681 caacctctgc ttaccttcac cagcaggtgc agtgggaagc gggcagccca aacagcacgg
     1741 caggtcacag ggctggagct ggacactgaa ggtcacaggc tctttgtggc tttttctggc
     1801 tgtatcatct acctccctct cagtcgatgt gcccggcatg gggcctgtcg gaggagctgt
     1861 ctggcttctc aggacccata ctgtggatgg gacagctcca gaggctgtgt ggatatcagg
     1921 ggacctggtg ggattgatgt gcatccagct gggaaccagg aatccatgga gcatgatgac
     1981 tgccaagatg gagctactgg gagtcagtct ggcacagggg attctgctta tggcgtgcga
     2041 cgggacctcc cggcagcctc agtctcccgc gccgtcccta tcccactcct cctggcctgt
     2101 gtggccgcag ccttcgccct gggcgcctcg gtctctggcc tcctggtctc ctgcgcttgt
     2161 cgccgcgccc acagacgtcg gagcaaggat atcgagactg cggggctccc gcgccctcta
     2221 tcccttcgca gcttggcccg tctgcacggg gcgggcccag agccgcagcc aacgtccaag
     2281 gacggagggg gcgcacagac accccagctc tacaccacct tcctgcctcc tcctgagggc
     2341 gtacccccgc cggagctggc ttgcctgccc accccggagt ccacgccgga gctgccggtc
     2401 aagcacctcc gccacgccgg gggtccctgg gagtggaacc agaacgggaa caacgccaag
     2461 gagggccggg gccgcgcccg gggcgggaac acggcgggcg gccccgcgcc gcgcgtgctg
     2521 gtgagaccgc cgccgcccgg ctgtcccggg caggccgtgg aagtcaccac cctggaggaa
     2581 ctgctgcgct atctgcacgg cccgcagccg cccaggaagg aggtcgagcc cccggccgcc
     2641 gcccctttca cctcgcgggc gctgccgccc gagcccgccc ccaccctctt tgccggcccc
     2701 tgcctgctcc cccgggactg tgccacgcct cggaggctgg acgtgccccc ggagggcaag
     2761 cgcccggccc ccgccacccg gcctgctctc tccgccccag ctccccggct cggggtgggc
     2821 ggcagccgga ggttgccctt ctccacgcac cgtgcacccc ccgcgctgct cacccgagtc
     2881 ccttcgggag gcccctccag gtactccggg ggtaccggga gacacctcct gtacctgggc
     2941 cggcctgagg ggcaccgggg ccgcgccctg aagagggtgg atgtcgagaa gccccaggtg
     3001 cccctgaagc ctcccctcgt cgggccttcc tcgcagtcgg ccgtccctag tggcaaccat
     3061 tttaactttt aaagggagct gctccaaggc ctcaaatggt accctcgagg cccatgccct
     3121 cagaggccgt gagcgtggac gcatctccaa ggacagatca cctccctctc tccttgttcc
     3181 acacct
//
LOCUS       XM_032614432            2536 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 6C (SEMA6C), transcript
            variant X6, mRNA.
ACCESSION   XM_032614432
VERSION     XM_032614432.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2536
                     /gene="SEMA6C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744533"
     CDS             161..2422
                     /gene="SEMA6C"
                     /codon_start=1
                     /product="semaphorin-6C isoform X5"
                     /protein_id="XP_032470323.1"
                     /db_xref="GeneID:116744533"
                     /translation="MPPSPTWPSLQRAACIQPQPRISRPVMLWFTEALGLSPHSAPPK
                     PHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFL
                     KLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAFYLDDI
                     ERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDVLTFIK
                     AHPLLDPAVPPATHQPLLTFTSRALLTQVAVDGMAGPYSNTTVLFLGSNDGTVLKVLP
                     PWGQSGGPEPILLEEIDAYSPSRCSGKRAAQTARQVTGLELDTEGHRLFVAFSGCIIY
                     LPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGIDVHPAGNQESMEHDDCQ
                     DGATGSQSGTGDSAYGVRRDLPAASVSRAVPIPLLLACVAAAFALGASVSGLLVSCAC
                     RRAHRRRSKDIETAGLPRPLSLRSLARLHGAGPEPQPTSKDGGGAQTPQLYTTFLPPP
                     EGVPPPELACLPTPESTPELPVKHLRHAGGPWEWNQNGNNAKEGRGRARGGNTAGGPA
                     PRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEVEPPAAAPFTSRALPPEPAP
                     TLFAGPCLLPRDCATPRRLDVPPEGKRPAPATRPALSAPAPRLGVGGSRRLPFSTHRA
                     PPALLTRVPSGGPSRYSGGTGRHLLYLGRPEGHRGRALKRVDVEKPQVPLKPPLVGPS
                     SQSAVPSGNHFNF"
     misc_feature    <290..1174
                     /gene="SEMA6C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1175..>1261
                     /gene="SEMA6C"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    <1952..2251
                     /gene="SEMA6C"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 gacgagtgct acaactacat tcgtgttctc gttccctggg actcccagac actccttgcc
       61 tgtggaacga actcattcag ccccgtgtgc cgcagctatg ggataacttc gctgcagcag
      121 gagggtgagg agctgagcgg gcaggctcga tgcccctttg atgccaccca gtccaacgtg
      181 gccgtctttg cagagggcag cctgtattca gccacagccg cggatttcca ggccagtgat
      241 gctgtggttt acagaagcct tgggcctcag cccccactcc gctccgccaa agccacactt
      301 tgtccacgct ttggagcatg gagaccatgt ctacttcttc ttccgagaag tctctgtgga
      361 ggacgcccgg ctggggaggg tacagttctc ccgtgtggcc cgtgtgtgta agcgtgacat
      421 gggcggctca cctcgggcct tggaccgcca ctggacatct ttcctgaagc tgcggctcaa
      481 ctgctctgtc cctggggact ctaccttcta ttttgacgtc ttacaggcct tgacagggcc
      541 tgtgaacttg tatggccgct ctgctctctt tggggtcttc accacccaga ccaatagcat
      601 ccccggctct gcggtctgtg ccttctacct ggatgatatt gagcgtgggt ttgagggaaa
      661 gttcaaggag cagagaagtc tggatggggc ctggacccct gtgtctgagg acagggtccc
      721 ctccccgagg ccaggatcct gtgcaggagt aggtgtagct gcattgttcc cctcttctcg
      781 agacctccct gatgatgtcc tgaccttcat caaggctcac ccactcctgg accctgccgt
      841 gccacctgcc acccatcaac ctctgcttac cttcaccagc agggccctac tgacccaggt
      901 agctgtggat ggcatggctg gtccttacag taataccaca gtcctgttcc ttggctccaa
      961 cgatgggaca gtgctgaagg tgctgccccc atgggggcaa tctgggggcc ctgagcccat
     1021 tctgttggaa gagatcgatg cctacagccc ctcccggtgc agtgggaagc gggcagccca
     1081 aacagcacgg caggtcacag ggctggagct ggacactgaa ggtcacaggc tctttgtggc
     1141 tttttctggc tgtatcatct acctccctct cagtcgatgt gcccggcatg gggcctgtcg
     1201 gaggagctgt ctggcttctc aggacccata ctgtggatgg gacagctcca gaggctgtgt
     1261 ggatatcagg ggacctggtg ggattgatgt gcatccagct gggaaccagg aatccatgga
     1321 gcatgatgac tgccaagatg gagctactgg gagtcagtct ggcacagggg attctgctta
     1381 tggcgtgcga cgggacctcc cggcagcctc agtctcccgc gccgtcccta tcccactcct
     1441 cctggcctgt gtggccgcag ccttcgccct gggcgcctcg gtctctggcc tcctggtctc
     1501 ctgcgcttgt cgccgcgccc acagacgtcg gagcaaggat atcgagactg cggggctccc
     1561 gcgccctcta tcccttcgca gcttggcccg tctgcacggg gcgggcccag agccgcagcc
     1621 aacgtccaag gacggagggg gcgcacagac accccagctc tacaccacct tcctgcctcc
     1681 tcctgagggc gtacccccgc cggagctggc ttgcctgccc accccggagt ccacgccgga
     1741 gctgccggtc aagcacctcc gccacgccgg gggtccctgg gagtggaacc agaacgggaa
     1801 caacgccaag gagggccggg gccgcgcccg gggcgggaac acggcgggcg gccccgcgcc
     1861 gcgcgtgctg gtgagaccgc cgccgcccgg ctgtcccggg caggccgtgg aagtcaccac
     1921 cctggaggaa ctgctgcgct atctgcacgg cccgcagccg cccaggaagg aggtcgagcc
     1981 cccggccgcc gcccctttca cctcgcgggc gctgccgccc gagcccgccc ccaccctctt
     2041 tgccggcccc tgcctgctcc cccgggactg tgccacgcct cggaggctgg acgtgccccc
     2101 ggagggcaag cgcccggccc ccgccacccg gcctgctctc tccgccccag ctccccggct
     2161 cggggtgggc ggcagccgga ggttgccctt ctccacgcac cgtgcacccc ccgcgctgct
     2221 cacccgagtc ccttcgggag gcccctccag gtactccggg ggtaccggga gacacctcct
     2281 gtacctgggc cggcctgagg ggcaccgggg ccgcgccctg aagagggtgg atgtcgagaa
     2341 gccccaggtg cccctgaagc ctcccctcgt cgggccttcc tcgcagtcgg ccgtccctag
     2401 tggcaaccat tttaactttt aaagggagct gctccaaggc ctcaaatggt accctcgagg
     2461 cccatgccct cagaggccgt gagcgtggac gcatctccaa ggacagatca cctccctctc
     2521 tccttgttcc acacct
//
LOCUS       XM_032614442            3456 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus semaphorin 6C (SEMA6C), transcript
            variant X7, mRNA.
ACCESSION   XM_032614442
VERSION     XM_032614442.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3456
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3456
                     /gene="SEMA6C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744533"
     CDS             448..3342
                     /gene="SEMA6C"
                     /codon_start=1
                     /product="semaphorin-6C isoform X6"
                     /protein_id="XP_032470333.1"
                     /db_xref="GeneID:116744533"
                     /translation="MPREPRFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPL
                     SWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLT
                     WRSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEG
                     EELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDS
                     KWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRH
                     WTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAF
                     YLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDV
                     LTFIKAHPLLDPAVPPATHQPLLTFTSRALLTQVAVDGMAGPYSNTTVLFLGSNDGTV
                     LKVLPPWGQSGGPEPILLEEIDAYSPSRCSGKRAAQTARQVTGLELDTEGHRLFVAFS
                     GCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGIDVHPAGNQESME
                     HDDCQDGATGSQSGTGDSAYVLLSPGPSPETPSPPSDAHPRPQSSTLGAHTQGVRRDL
                     PAASVSRAVPIPLLLACVAAAFALGASVSGLLVSCACRRAHRRRSKDIETAGLPRPLS
                     LRSLARLHGAGPEPQPTSKDGGGAQTPQLYTTFLPPPEGVPPPELACLPTPESTPELP
                     VKHLRHAGGPWEWNQNGNNAKEGRGRARGGNTAGGPAPRVLVRPPPPGCPGQAVEVTT
                     LEELLRYLHGPQPPRKEVEPPAAAPFTSRALPPEPAPTLFAGPCLLPRDCATPRRLDV
                     PPEGKRPAPATRPALSAPAPRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGTG
                     RHLLYLGRPEGHRGRALKRVDVEKPQVPLKPPLVGPSSQSAVPSGNHFNF"
     misc_feature    604..1998
                     /gene="SEMA6C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; Region: Sema; cl15693"
                     /db_xref="CDD:472829"
     misc_feature    1999..>2085
                     /gene="SEMA6C"
                     /note="Plexin repeat; Region: PSI; pfam01437"
                     /db_xref="CDD:396154"
     misc_feature    <2872..3321
                     /gene="SEMA6C"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 agcttttgct aagaagcctg ctggattctg aaggttttaa tgtgggagtg gtcgtcatgc
       61 cctccaaact ctcccagtcc ccccttttcc caagactggt cctgcagttc caggagtttc
      121 tgggtagggg ccagccccag cccctgccct cacatctctg ggcatgaagc agccagcacc
      181 tttgtaatca ggctcaatgt caatgtgccc cccactccca gggcagcatc tctcctaccc
      241 tagcttcatt agacttctcc tgaatgttca cattcacttt tattggatgt ggtaaggagg
      301 tatagctcag cctcttccct ccttctgtcc cttcttccat caggtcagag gtctcctatc
      361 cccctcaaac ccccacagga gtcaccaccc cagggccagc atatgggtga gggggcaccc
      421 cctggggcct gagctgcccc acacaggatg ccccgtgagc cccgcttcat gcccttgctg
      481 ctactgctgt tgctgctctc acttccccac acccaggctg cctttcccca ggaccccctc
      541 cctctgctga cctctgacct gcaaggtatt tccccattat cctggttccg gggcctggag
      601 gatgacgctg tggttgcaga acttgggctg gactttcaga gattcctgac cttgaaccgg
      661 accttgctag tggctgcacg ggatcacgtt ttctccttcg atcttcaagc ccaagaagaa
      721 ggggaggggc tagtgcccaa caagtatcta acatggagga gtcaagacat ggagaactgt
      781 gccgtgcggg ggaagctgac ggacgagtgc tacaactaca ttcgtgttct cgttccctgg
      841 gactcccaga cactccttgc ctgtggaacg aactcattca gccccgtgtg ccgcagctat
      901 gggataactt cgctgcagca ggagggtgag gagctgagcg ggcaggctcg atgccccttt
      961 gatgccaccc agtccaacgt ggccgtcttt gcagagggca gcctgtattc agccacagcc
     1021 gcggatttcc aggccagtga tgctgtggtt tacagaagcc ttgggcctca gcccccactc
     1081 cgctccgcca agtacgactc caagtggctc cgagagccac actttgtcca cgctttggag
     1141 catggagacc atgtctactt cttcttccga gaagtctctg tggaggacgc ccggctgggg
     1201 agggtacagt tctcccgtgt ggcccgtgtg tgtaagcgtg acatgggcgg ctcacctcgg
     1261 gccttggacc gccactggac atctttcctg aagctgcggc tcaactgctc tgtccctggg
     1321 gactctacct tctattttga cgtcttacag gccttgacag ggcctgtgaa cttgtatggc
     1381 cgctctgctc tctttggggt cttcaccacc cagaccaata gcatccccgg ctctgcggtc
     1441 tgtgccttct acctggatga tattgagcgt gggtttgagg gaaagttcaa ggagcagaga
     1501 agtctggatg gggcctggac ccctgtgtct gaggacaggg tcccctcccc gaggccagga
     1561 tcctgtgcag gagtaggtgt agctgcattg ttcccctctt ctcgagacct ccctgatgat
     1621 gtcctgacct tcatcaaggc tcacccactc ctggaccctg ccgtgccacc tgccacccat
     1681 caacctctgc ttaccttcac cagcagggcc ctactgaccc aggtagctgt ggatggcatg
     1741 gctggtcctt acagtaatac cacagtcctg ttccttggct ccaacgatgg gacagtgctg
     1801 aaggtgctgc ccccatgggg gcaatctggg ggccctgagc ccattctgtt ggaagagatc
     1861 gatgcctaca gcccctcccg gtgcagtggg aagcgggcag cccaaacagc acggcaggtc
     1921 acagggctgg agctggacac tgaaggtcac aggctctttg tggctttttc tggctgtatc
     1981 atctacctcc ctctcagtcg atgtgcccgg catggggcct gtcggaggag ctgtctggct
     2041 tctcaggacc catactgtgg atgggacagc tccagaggct gtgtggatat caggggacct
     2101 ggtgggattg atgtgcatcc agctgggaac caggaatcca tggagcatga tgactgccaa
     2161 gatggagcta ctgggagtca gtctggcaca ggggattctg cttatgtgct tctgagtcct
     2221 ggcccttccc ctgagacccc aagccccccc agtgatgccc acccccggcc ccagtcttcc
     2281 actcttggag ctcacactca gggcgtgcga cgggacctcc cggcagcctc agtctcccgc
     2341 gccgtcccta tcccactcct cctggcctgt gtggccgcag ccttcgccct gggcgcctcg
     2401 gtctctggcc tcctggtctc ctgcgcttgt cgccgcgccc acagacgtcg gagcaaggat
     2461 atcgagactg cggggctccc gcgccctcta tcccttcgca gcttggcccg tctgcacggg
     2521 gcgggcccag agccgcagcc aacgtccaag gacggagggg gcgcacagac accccagctc
     2581 tacaccacct tcctgcctcc tcctgagggc gtacccccgc cggagctggc ttgcctgccc
     2641 accccggagt ccacgccgga gctgccggtc aagcacctcc gccacgccgg gggtccctgg
     2701 gagtggaacc agaacgggaa caacgccaag gagggccggg gccgcgcccg gggcgggaac
     2761 acggcgggcg gccccgcgcc gcgcgtgctg gtgagaccgc cgccgcccgg ctgtcccggg
     2821 caggccgtgg aagtcaccac cctggaggaa ctgctgcgct atctgcacgg cccgcagccg
     2881 cccaggaagg aggtcgagcc cccggccgcc gcccctttca cctcgcgggc gctgccgccc
     2941 gagcccgccc ccaccctctt tgccggcccc tgcctgctcc cccgggactg tgccacgcct
     3001 cggaggctgg acgtgccccc ggagggcaag cgcccggccc ccgccacccg gcctgctctc
     3061 tccgccccag ctccccggct cggggtgggc ggcagccgga ggttgccctt ctccacgcac
     3121 cgtgcacccc ccgcgctgct cacccgagtc ccttcgggag gcccctccag gtactccggg
     3181 ggtaccggga gacacctcct gtacctgggc cggcctgagg ggcaccgggg ccgcgccctg
     3241 aagagggtgg atgtcgagaa gccccaggtg cccctgaagc ctcccctcgt cgggccttcc
     3301 tcgcagtcgg ccgtccctag tggcaaccat tttaactttt aaagggagct gctccaaggc
     3361 ctcaaatggt accctcgagg cccatgccct cagaggccgt gagcgtggac gcatctccaa
     3421 ggacagatca cctccctctc tccttgttcc acacct
//
LOCUS       XR_004347087             301 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744559
            (LOC116744559), ncRNA.
ACCESSION   XR_004347087
VERSION     XR_004347087.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..301
                     /gene="LOC116744559"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744559"
     ncRNA           1..301
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744559"
                     /product="uncharacterized LOC116744559"
                     /db_xref="GeneID:116744559"
ORIGIN      
        1 ccacccccca actctgcagg agaccctcca acactagcag gttcccctca cccttcgtta
       61 gcacctcttc tggtctcagt gacctacatg gtggcatgat acagaccctc cgtcctgaga
      121 cgtctgagcc tgtggtcacc ttatccgtct caggccatgg accctgcact tgtctatttc
      181 ctgacacccc tgtgtggggc ctgcagtgca gcaatggtct atttttggct tgctcacatg
      241 tactgagccg actctctcat gaacagattt tggctttttt tctcctccag ctggatataa
      301 g
//
LOCUS       XM_032614465            5182 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho/Rac guanine nucleotide exchange
            factor 2 (ARHGEF2), transcript variant X1, mRNA.
ACCESSION   XM_032614465
VERSION     XM_032614465.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5182
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5182
                     /gene="ARHGEF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 41 long SRA reads, 6
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116744564"
     CDS             250..3777
                     /gene="ARHGEF2"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 2 isoform
                     X1"
                     /protein_id="XP_032470356.1"
                     /db_xref="GeneID:116744564"
                     /translation="MNKDVPEVLLTGGDLVPQGHTRRCLSVVESREQLEENEEEGEKE
                     RDGSHAVPLRRSRAFRAYSHNYDPFKRHSWGPGKELQDPLSRNKLQASGCVGSQEPPL
                     LQNQEELDPFLELQHQGGQPSCVGQRSCHPSAGLLDHSPTGMLSKSVSMSGINYFLGC
                     SDPAGNLSQSSAADLSKSCSHLEGGSGTWAGSSLRRTLSFILGMTGKAKSREKEKMKE
                     AKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTIHNRCKDTLANCTK
                     VKQKQQKAALLKNNTALQSVSLRSKTTTRERPSSAIYPSDSFRQSLLGSRRGRSSLSL
                     AKSVSTTNIAGHFNDESPLGLRRILSQSTDSLNMRNRTLSVESLIDEGAEVIYNELMS
                     DFEMDEKDFAADSWSLAVDSNFLQQHKKEVMKQQDVIYELIQTELHHVRTLKIMTRLF
                     RTGMLEELQLEPGVVQGLFPCVDELSDIHTRFLSQLLERRRQALCPGSTRNFVIHRLG
                     DLLISQFSGPSAEQMRKTYSEFCSRHTKALKLYKELYARDKRFQQFIRKVTRSAVLKR
                     HGVQECILLVTQRITKYPVLINRILQHSHGIEEERQDLTTALGLVKELLSNVDQDVHE
                     LEKGARLQEIYNRMDPRAQAPVPGKGPFGREELLRRKLIHDGCLLWKTATGRFKDVLM
                     LLMTDVLVFLQEKDQKYIFPALDKPSVVSLQNLIVRDIANQEKGMFLISAAPPEMYEV
                     HTASRDDRSTWIRVIQQSVRVCPSREDFPLIETEDEAYLRRIKMELQQKDRALVELLQ
                     EKVGLFAEMTHFQVEEDGGSGMPLPTLPRGLFRSESLESPRGERLLQDAIREVEGLKD
                     LLVGPGVELLLTPREPTLSMEPDSGGNTSPGVTANGEARTFNGSIELCRADSDSSQKD
                     RNGNQLRSPQEEALQRLVNLYGLLHGLQAAVAQQDTLMEARFPEGPERREKLTRANSR
                     DGEAGRAGAAPVAPEKQATELALLQRQHTLLQEELRRCRRLGEERATEAGSLEARLRE
                     SEQARALLEREAEEARRQLAALGHTEPLPAEAPWARRPLDPRRRSLPAGDALYLSFTP
                     PQPSRGHDRLDLPVTIRSVHRPFEDRERQELGSPDERLQDSSDPDTGSEEEGSSRLSP
                     PHSPRDFTRMQDIPEETESRDGEPVASES"
     misc_feature    916..1098
                     /gene="ARHGEF2"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in Rho guanine nucleotide exchange factor 2
                     (ARHGEF2) and similar proteins; Region: C1_ARHGEF2;
                     cd20877"
                     /db_xref="CDD:410427"
     misc_feature    1522..2106
                     /gene="ARHGEF2"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1540..1542,1552..1554,1873..1875,1957..1962,
                     1969..1974,1978..1983,1990..1995,2002..2007,2014..2016,
                     2092..2094,2104..2106)
                     /gene="ARHGEF2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2224..2571
                     /gene="ARHGEF2"
                     /note="Rho guanine nucleotide exchange factor 2 Pleckstrin
                     homology (PH) domain; Region: PH_ARHGEF2; cd13393"
                     /db_xref="CDD:275428"
     misc_feature    <3019..>3450
                     /gene="ARHGEF2"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
ORIGIN      
        1 agtagttgga gaggcagctg atctggactg gaatgagtcc cccctgtctc ctatgcaaac
       61 ttctggacca tgagcaattc ccttaaaagg accaagaaag aggcaccccc attaagtcct
      121 ggactggatt cttagagggg ctgtctgaag tgggacttct tcctatactg cagtcaccaa
      181 ccgaaggcaa gaacaggtct cccatctttg ggatatctcc caagtctgac tggcctgtgt
      241 gtacctccca tgaacaagga cgtcccagag gtgctcctca caggtggaga cctggtgccc
      301 caaggccaca ctcgacgctg cctgtctgtg gtcgagtcca gagaacagct ggaggagaat
      361 gaggaagagg gagaaaagga gagagacggc tcccacgctg tacccctccg aaggtcgagg
      421 gctttccgtg cctacagtca caactacgac cccttcaaaa gacatagttg ggggccgggc
      481 aaggagctcc aggatccact gagcaggaac aaactgcagg catcgggatg tgtgggctcc
      541 caggagcccc ccttactgca gaaccaagag gaactggacc cctttctgga actgcagcac
      601 caaggtggcc aaccctcctg cgtgggtcag cgttcctgtc acccatctgc tggccttttg
      661 gaccactcgc ccaccggcat gctttccaag tctgtatcca tgagtggcat caattacttc
      721 ttgggctgct cagatccagc tgggaatttg tcccagtcct ctgctgctga cctcagcaaa
      781 agctgtagcc acctggaagg gggctcaggc acctgggcag gctcctccct gagacggacc
      841 ctcagcttca tcttgggcat gaccggaaag gccaagtccc gggaaaaaga gaaaatgaag
      901 gaagccaagg acgcccgcta taccaacggg cacctcttca ccaccatctc cgtttcgggc
      961 atgaccatgt gctatgcctg taacaagagc atcacagcca aggaggccct catctgccca
     1021 acctgcaatg tgactatcca caaccgctgt aaagacaccc tcgccaactg taccaaggtc
     1081 aagcagaagc aacagaaagc tgccctgctg aagaacaaca ctgccttgca gtctgtttca
     1141 cttcgcagta agaccaccac tcgggagcgt cccagctctg ccatctaccc ctccgacagc
     1201 ttccgacagt ccctgcttgg ctcccgccgt ggccgctcct ccttgtcttt agccaaaagt
     1261 gtttccacca ccaacattgc tggacacttc aatgatgagt ctcccctggg gctgcgccgg
     1321 atcctctccc agtccacaga ctccctcaac atgcggaacc ggaccctgtc agtggagtcc
     1381 ctcatcgacg aaggtgcaga ggtgatctac aatgagttga tgagtgactt tgagatggat
     1441 gagaaggact ttgcagctga ttcctggagc cttgctgtgg atagcaactt tttgcagcag
     1501 cataaaaagg aggtgatgaa gcagcaggat gtcatttatg agctgatcca gacagagcta
     1561 caccatgtgc ggaccctgaa gatcatgacg cgcctcttcc gcacgggaat gctggaagag
     1621 ctacagctgg agccaggagt ggtccagggc ctgttcccct gcgtggacga actcagtgac
     1681 atccatacac gcttcctcag ccagctgtta gaacgccgac gccaggccct gtgccctggc
     1741 agcacccgga acttcgtcat ccatcgcttg ggtgacctgc tcatcagcca gttctcaggt
     1801 cccagcgcag agcagatgcg gaagacctac tcggagttct gtagccgcca caccaaggcc
     1861 ttaaagctct ataaggagct atatgcccga gacaaacgct tccagcagtt catccggaaa
     1921 gtgacccgct cggccgtgct gaagcggcat ggtgtacagg agtgcatcct actggtgact
     1981 cagcgcatca ccaagtaccc ggtgctcatc aaccggatcc tgcagcattc ccacgggatc
     2041 gaggaggagc gccaggacct gacgacggca ctggggctgg tgaaggagct gctgtccaac
     2101 gtagaccagg atgtgcacga gctggagaaa ggggcccgcc tgcaggagat ctacaaccgt
     2161 atggaccctc gggcccaggc cccggtgcct ggcaagggcc cttttggccg agaggagctt
     2221 ctgcggcgca agctcatcca cgatggttgc ctgctctgga agacagctac tgggcgcttc
     2281 aaagatgtgc tcatgctgct gatgacagat gtgctggtat ttctccagga gaaggaccag
     2341 aagtacatct ttcctgccct ggacaagccc tcggtggtgt cactgcagaa tctaatcgtg
     2401 cgggacatcg ccaaccagga gaaagggatg tttctgatca gcgcggcacc ccctgagatg
     2461 tatgaggtcc acacggcatc ccgggatgac cggagcacct ggatccgcgt cattcagcag
     2521 agtgtgcgag tatgcccatc cagggaggac ttccccctga ttgagacaga ggatgaggct
     2581 tacctgcggc gtatcaagat ggagctgcag cagaaagacc gggcactggt ggagctgctg
     2641 caggagaagg ttgggctgtt tgctgagatg acccacttcc aagtggaaga ggatggcggc
     2701 agcgggatgc cgctgcccac cctgcccagg gggcttttcc gctctgagtc cctcgagtcc
     2761 cctcgtggcg agcggctgct gcaggatgcc atccgtgagg tggagggcct gaaagacctg
     2821 ctggtggggc ctggagtgga gctgctcttg acaccccggg aaccaaccct gtccatggaa
     2881 ccggacagcg gtggtaacac aagtccagga gtcactgcca atggtgaggc cagaaccttc
     2941 aatggctcca ttgagctctg cagagctgac tcagactcca gccagaagga tcgaaatgga
     3001 aatcagctga gatctcccca ggaggaagcg ttgcagcgat tggtcaatct ctatggactt
     3061 ctacatggcc tacaggcggc tgtggcccag caggacactt tgatggaagc ccggttccct
     3121 gagggccccg agcggcggga gaagctgacc cgagccaact cccgggatgg ggaggctggc
     3181 agagccggcg ctgcccctgt ggctcctgaa aagcaggcta cggaactggc attgctgcag
     3241 cggcaacaca cgctgctgca agaggagcta cggcgctgcc gacgcctcgg cgaagagcgg
     3301 gcgacagagg ctggcagcct ggaagcccgg ctccgagaga gcgagcaggc ccgcgccctg
     3361 ctggagcggg aggccgaaga ggctcgcagg cagctggccg ccttgggcca cacggaacca
     3421 ctcccggctg aggccccctg ggcccggcgg cctctggatc cgaggcggcg tagcctccct
     3481 gcaggcgatg ccctgtactt gagtttcacc cccccacagc ccagccgagg ccacgaccgc
     3541 ctagatttgc ctgtgactat tcgctccgtc catcgaccct ttgaggatcg agagaggcag
     3601 gagctgggca gccccgacga gcggctgcaa gatagcagtg accccgacac cggcagcgag
     3661 gaggaaggta gcagccgtct gtctccgccc catagtccac gagacttcac ccgaatgcag
     3721 gacatcccgg aagagactga gagccgtgac ggggagcctg tagcttcaga gagctaaggg
     3781 ggcccctccc cccaccccat gtccccctga agaacattac tgagggaggc aaacctgggg
     3841 actccaatct gccaatgacg agggaacatt tgaaagaact gctgattgtc cttgccagct
     3901 cttgggatcc ttggacacgg gggcgggggg ggggcgccat ttaggaagct gggggtatta
     3961 ggccacagtg ccccctggtg gcatccagaa gctacactgc agatgccaat ttttcatgcc
     4021 tttttccctc tactttagga aaatttattt atttattgtt tattagttat ggagggagag
     4081 gggagattta gaggaccagg gacatgggaa ccaagccata gggatcaggg ggccttgtcc
     4141 tttaacacta ctggggttta ttcaggctta accatgcagc tgctgggttc tagccctgac
     4201 acccctcctg agcaacaccc atctttgagg agaggctgca gccataagac cctactgccc
     4261 cttcaggaag ggctgtggtc agggccatgt ccctctcccc ttcccctcaa cctcttactg
     4321 ctgttctccc atctctctgt cttcaatgga aaccccaggg agataacctg gcttcctaga
     4381 gttgatggaa tacaggttga ggtggccgta aagggggctt ggggggtgag gggaaaaact
     4441 cacagggacc agaatgtttc tttgttgttg ttgttttctt tttttgtacc aaagccaact
     4501 gcacgtgttt tatattttta agagaagatt gtaggcaatt agaaatcgca gccttctatc
     4561 tctgcatctc agaagaactt gagggatggg gggaacaatg acttctccac tcatctatag
     4621 tactggggga cccattttga cctcttcccc agccgtttgg ccaaacagtt cttgggtgag
     4681 ttgggaaatc tctacaaacc ctgacctcat cccccacctc agcaaccatg acccgaaacc
     4741 tctgcgtgaa tttgggggat ttttcaatgg acctcccccg gcccagtgcc tgccagcccc
     4801 agccagtttt ctgcaaattt gattgttaaa aaaaaaaaaa agaagaggaa aaaaaaaaaa
     4861 aagaaaggga aaaagataaa acagggaaaa ttaaagtcct ggaaccccag gaagtactgt
     4921 ctgttaatgt ctgccagttc tgagggtgct ggtgaggggg agagccaggc aatgacgtgt
     4981 gttcctccaa aaggagcctc ttcctctccc aggaagggtg actgcctccc tgaagacagg
     5041 gggcgctaac aaaagaaact gctgcccacc ttttttttgc tgtcatcttt gacgctcaca
     5101 aatacaagga taataatgaa gggacactta ggttccagtg gctgttggag gttccaacat
     5161 taaaaaactt gttttcatct ca
//
LOCUS       XM_032614475            4710 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho/Rac guanine nucleotide exchange
            factor 2 (ARHGEF2), transcript variant X2, mRNA.
ACCESSION   XM_032614475
VERSION     XM_032614475.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4710
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4710
                     /gene="ARHGEF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 45 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744564"
     CDS             342..3305
                     /gene="ARHGEF2"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 2 isoform
                     X2"
                     /protein_id="XP_032470366.1"
                     /db_xref="GeneID:116744564"
                     /translation="MSRIESLTRARIDRSKELASKSREKEKMKEAKDARYTNGHLFTT
                     ISVSGMTMCYACNKSITAKEALICPTCNVTIHNRCKDTLANCTKVKQKQQKAALLKNN
                     TALQSVSLRSKTTTRERPSSAIYPSDSFRQSLLGSRRGRSSLSLAKSVSTTNIAGHFN
                     DESPLGLRRILSQSTDSLNMRNRTLSVESLIDEGAEVIYNELMSDFEMDEKDFAADSW
                     SLAVDSNFLQQHKKEVMKQQDVIYELIQTELHHVRTLKIMTRLFRTGMLEELQLEPGV
                     VQGLFPCVDELSDIHTRFLSQLLERRRQALCPGSTRNFVIHRLGDLLISQFSGPSAEQ
                     MRKTYSEFCSRHTKALKLYKELYARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRI
                     TKYPVLINRILQHSHGIEEERQDLTTALGLVKELLSNVDQDVHELEKGARLQEIYNRM
                     DPRAQAPVPGKGPFGREELLRRKLIHDGCLLWKTATGRFKDVLMLLMTDVLVFLQEKD
                     QKYIFPALDKPSVVSLQNLIVRDIANQEKGMFLISAAPPEMYEVHTASRDDRSTWIRV
                     IQQSVRVCPSREDFPLIETEDEAYLRRIKMELQQKDRALVELLQEKVGLFAEMTHFQV
                     EEDGGSGMPLPTLPRGLFRSESLESPRGERLLQDAIREVEGLKDLLVGPGVELLLTPR
                     EPTLSMEPDSGGNTSPGVTANGEARTFNGSIELCRADSDSSQKDRNGNQLRSPQEEAL
                     QRLVNLYGLLHGLQAAVAQQDTLMEARFPEGPERREKLTRANSRDGEAGRAGAAPVAP
                     EKQATELALLQRQHTLLQEELRRCRRLGEERATEAGSLEARLRESEQARALLEREAEE
                     ARRQLAALGHTEPLPAEAPWARRPLDPRRRSLPAGDALYLSFTPPQPSRGHDRLDLPV
                     TIRSVHRPFEDRERQELGSPDERLQDSSDPDTGSEEEGSSRLSPPHSPRDFTRMQDIP
                     EETESRDGEPVASES"
     misc_feature    444..626
                     /gene="ARHGEF2"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in Rho guanine nucleotide exchange factor 2
                     (ARHGEF2) and similar proteins; Region: C1_ARHGEF2;
                     cd20877"
                     /db_xref="CDD:410427"
     misc_feature    1050..1634
                     /gene="ARHGEF2"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1068..1070,1080..1082,1401..1403,1485..1490,
                     1497..1502,1506..1511,1518..1523,1530..1535,1542..1544,
                     1620..1622,1632..1634)
                     /gene="ARHGEF2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1752..2099
                     /gene="ARHGEF2"
                     /note="Rho guanine nucleotide exchange factor 2 Pleckstrin
                     homology (PH) domain; Region: PH_ARHGEF2; cd13393"
                     /db_xref="CDD:275428"
     misc_feature    <2547..>2978
                     /gene="ARHGEF2"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
ORIGIN      
        1 agaggcgccc ggcgctggag ggcaaacagg cagaggggcc ctgcgagcta gtccacggcc
       61 ccttgtactt gtgcgagccg cccctccacg gaccgaggcg tcccgtccgg cgctcggcac
      121 ccgccctccc tccgccccgc ctcccccctt cctgagctcg ggcgggggtg gagactcggg
      181 tttgaggaac tggcgctggg tgccgggcga ggggagtcag acttcctgtc cccaagaccg
      241 acgcgtgcgg gtcggacccc tcccccgccc tccccccaca aacagccgga cgccagggtc
      301 cgcgccgcgt cctcctgggc tccccccgcc cccatcggat tatgtctcgg atcgaatccc
      361 tcacacgggc gcggatcgac cggagcaaag agctggccag caagtcccgg gaaaaagaga
      421 aaatgaagga agccaaggac gcccgctata ccaacgggca cctcttcacc accatctccg
      481 tttcgggcat gaccatgtgc tatgcctgta acaagagcat cacagccaag gaggccctca
      541 tctgcccaac ctgcaatgtg actatccaca accgctgtaa agacaccctc gccaactgta
      601 ccaaggtcaa gcagaagcaa cagaaagctg ccctgctgaa gaacaacact gccttgcagt
      661 ctgtttcact tcgcagtaag accaccactc gggagcgtcc cagctctgcc atctacccct
      721 ccgacagctt ccgacagtcc ctgcttggct cccgccgtgg ccgctcctcc ttgtctttag
      781 ccaaaagtgt ttccaccacc aacattgctg gacacttcaa tgatgagtct cccctggggc
      841 tgcgccggat cctctcccag tccacagact ccctcaacat gcggaaccgg accctgtcag
      901 tggagtccct catcgacgaa ggtgcagagg tgatctacaa tgagttgatg agtgactttg
      961 agatggatga gaaggacttt gcagctgatt cctggagcct tgctgtggat agcaactttt
     1021 tgcagcagca taaaaaggag gtgatgaagc agcaggatgt catttatgag ctgatccaga
     1081 cagagctaca ccatgtgcgg accctgaaga tcatgacgcg cctcttccgc acgggaatgc
     1141 tggaagagct acagctggag ccaggagtgg tccagggcct gttcccctgc gtggacgaac
     1201 tcagtgacat ccatacacgc ttcctcagcc agctgttaga acgccgacgc caggccctgt
     1261 gccctggcag cacccggaac ttcgtcatcc atcgcttggg tgacctgctc atcagccagt
     1321 tctcaggtcc cagcgcagag cagatgcgga agacctactc ggagttctgt agccgccaca
     1381 ccaaggcctt aaagctctat aaggagctat atgcccgaga caaacgcttc cagcagttca
     1441 tccggaaagt gacccgctcg gccgtgctga agcggcatgg tgtacaggag tgcatcctac
     1501 tggtgactca gcgcatcacc aagtacccgg tgctcatcaa ccggatcctg cagcattccc
     1561 acgggatcga ggaggagcgc caggacctga cgacggcact ggggctggtg aaggagctgc
     1621 tgtccaacgt agaccaggat gtgcacgagc tggagaaagg ggcccgcctg caggagatct
     1681 acaaccgtat ggaccctcgg gcccaggccc cggtgcctgg caagggccct tttggccgag
     1741 aggagcttct gcggcgcaag ctcatccacg atggttgcct gctctggaag acagctactg
     1801 ggcgcttcaa agatgtgctc atgctgctga tgacagatgt gctggtattt ctccaggaga
     1861 aggaccagaa gtacatcttt cctgccctgg acaagccctc ggtggtgtca ctgcagaatc
     1921 taatcgtgcg ggacatcgcc aaccaggaga aagggatgtt tctgatcagc gcggcacccc
     1981 ctgagatgta tgaggtccac acggcatccc gggatgaccg gagcacctgg atccgcgtca
     2041 ttcagcagag tgtgcgagta tgcccatcca gggaggactt ccccctgatt gagacagagg
     2101 atgaggctta cctgcggcgt atcaagatgg agctgcagca gaaagaccgg gcactggtgg
     2161 agctgctgca ggagaaggtt gggctgtttg ctgagatgac ccacttccaa gtggaagagg
     2221 atggcggcag cgggatgccg ctgcccaccc tgcccagggg gcttttccgc tctgagtccc
     2281 tcgagtcccc tcgtggcgag cggctgctgc aggatgccat ccgtgaggtg gagggcctga
     2341 aagacctgct ggtggggcct ggagtggagc tgctcttgac accccgggaa ccaaccctgt
     2401 ccatggaacc ggacagcggt ggtaacacaa gtccaggagt cactgccaat ggtgaggcca
     2461 gaaccttcaa tggctccatt gagctctgca gagctgactc agactccagc cagaaggatc
     2521 gaaatggaaa tcagctgaga tctccccagg aggaagcgtt gcagcgattg gtcaatctct
     2581 atggacttct acatggccta caggcggctg tggcccagca ggacactttg atggaagccc
     2641 ggttccctga gggccccgag cggcgggaga agctgacccg agccaactcc cgggatgggg
     2701 aggctggcag agccggcgct gcccctgtgg ctcctgaaaa gcaggctacg gaactggcat
     2761 tgctgcagcg gcaacacacg ctgctgcaag aggagctacg gcgctgccga cgcctcggcg
     2821 aagagcgggc gacagaggct ggcagcctgg aagcccggct ccgagagagc gagcaggccc
     2881 gcgccctgct ggagcgggag gccgaagagg ctcgcaggca gctggccgcc ttgggccaca
     2941 cggaaccact cccggctgag gccccctggg cccggcggcc tctggatccg aggcggcgta
     3001 gcctccctgc aggcgatgcc ctgtacttga gtttcacccc cccacagccc agccgaggcc
     3061 acgaccgcct agatttgcct gtgactattc gctccgtcca tcgacccttt gaggatcgag
     3121 agaggcagga gctgggcagc cccgacgagc ggctgcaaga tagcagtgac cccgacaccg
     3181 gcagcgagga ggaaggtagc agccgtctgt ctccgcccca tagtccacga gacttcaccc
     3241 gaatgcagga catcccggaa gagactgaga gccgtgacgg ggagcctgta gcttcagaga
     3301 gctaaggggg cccctccccc caccccatgt ccccctgaag aacattactg agggaggcaa
     3361 acctggggac tccaatctgc caatgacgag ggaacatttg aaagaactgc tgattgtcct
     3421 tgccagctct tgggatcctt ggacacgggg gcgggggggg ggcgccattt aggaagctgg
     3481 gggtattagg ccacagtgcc ccctggtggc atccagaagc tacactgcag atgccaattt
     3541 ttcatgcctt tttccctcta ctttaggaaa atttatttat ttattgttta ttagttatgg
     3601 agggagaggg gagatttaga ggaccaggga catgggaacc aagccatagg gatcaggggg
     3661 ccttgtcctt taacactact ggggtttatt caggcttaac catgcagctg ctgggttcta
     3721 gccctgacac ccctcctgag caacacccat ctttgaggag aggctgcagc cataagaccc
     3781 tactgcccct tcaggaaggg ctgtggtcag ggccatgtcc ctctcccctt cccctcaacc
     3841 tcttactgct gttctcccat ctctctgtct tcaatggaaa ccccagggag ataacctggc
     3901 ttcctagagt tgatggaata caggttgagg tggccgtaaa gggggcttgg ggggtgaggg
     3961 gaaaaactca cagggaccag aatgtttctt tgttgttgtt gttttctttt tttgtaccaa
     4021 agccaactgc acgtgtttta tatttttaag agaagattgt aggcaattag aaatcgcagc
     4081 cttctatctc tgcatctcag aagaacttga gggatggggg gaacaatgac ttctccactc
     4141 atctatagta ctgggggacc cattttgacc tcttccccag ccgtttggcc aaacagttct
     4201 tgggtgagtt gggaaatctc tacaaaccct gacctcatcc cccacctcag caaccatgac
     4261 ccgaaacctc tgcgtgaatt tgggggattt ttcaatggac ctcccccggc ccagtgcctg
     4321 ccagccccag ccagttttct gcaaatttga ttgttaaaaa aaaaaaaaag aagaggaaaa
     4381 aaaaaaaaaa gaaagggaaa aagataaaac agggaaaatt aaagtcctgg aaccccagga
     4441 agtactgtct gttaatgtct gccagttctg agggtgctgg tgagggggag agccaggcaa
     4501 tgacgtgtgt tcctccaaaa ggagcctctt cctctcccag gaagggtgac tgcctccctg
     4561 aagacagggg gcgctaacaa aagaaactgc tgcccacctt ttttttgctg tcatctttga
     4621 cgctcacaaa tacaaggata ataatgaagg gacacttagg ttccagtggc tgttggaggt
     4681 tccaacatta aaaaacttgt tttcatctca
//
LOCUS       XM_032614485            4420 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho/Rac guanine nucleotide exchange
            factor 2 (ARHGEF2), transcript variant X3, mRNA.
ACCESSION   XM_032614485
VERSION     XM_032614485.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4420
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4420
                     /gene="ARHGEF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 45 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744564"
     CDS             97..3015
                     /gene="ARHGEF2"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 2 isoform
                     X3"
                     /protein_id="XP_032470376.1"
                     /db_xref="GeneID:116744564"
                     /translation="MTGKAKSREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKS
                     ITAKEALICPTCNVTIHNRCKDTLANCTKVKQKQQKAALLKNNTALQSVSLRSKTTTR
                     ERPSSAIYPSDSFRQSLLGSRRGRSSLSLAKSVSTTNIAGHFNDESPLGLRRILSQST
                     DSLNMRNRTLSVESLIDEGAEVIYNELMSDFEMDEKDFAADSWSLAVDSNFLQQHKKE
                     VMKQQDVIYELIQTELHHVRTLKIMTRLFRTGMLEELQLEPGVVQGLFPCVDELSDIH
                     TRFLSQLLERRRQALCPGSTRNFVIHRLGDLLISQFSGPSAEQMRKTYSEFCSRHTKA
                     LKLYKELYARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSH
                     GIEEERQDLTTALGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQAPVPGKGPFG
                     REELLRRKLIHDGCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALDKPSVVS
                     LQNLIVRDIANQEKGMFLISAAPPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFP
                     LIETEDEAYLRRIKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGGSGMPLPTLPR
                     GLFRSESLESPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPTLSMEPDSGGNTS
                     PGVTANGEARTFNGSIELCRADSDSSQKDRNGNQLRSPQEEALQRLVNLYGLLHGLQA
                     AVAQQDTLMEARFPEGPERREKLTRANSRDGEAGRAGAAPVAPEKQATELALLQRQHT
                     LLQEELRRCRRLGEERATEAGSLEARLRESEQARALLEREAEEARRQLAALGHTEPLP
                     AEAPWARRPLDPRRRSLPAGDALYLSFTPPQPSRGHDRLDLPVTIRSVHRPFEDRERQ
                     ELGSPDERLQDSSDPDTGSEEEGSSRLSPPHSPRDFTRMQDIPEETESRDGEPVASES
                     "
     misc_feature    154..336
                     /gene="ARHGEF2"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in Rho guanine nucleotide exchange factor 2
                     (ARHGEF2) and similar proteins; Region: C1_ARHGEF2;
                     cd20877"
                     /db_xref="CDD:410427"
     misc_feature    760..1344
                     /gene="ARHGEF2"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(778..780,790..792,1111..1113,1195..1200,1207..1212,
                     1216..1221,1228..1233,1240..1245,1252..1254,1330..1332,
                     1342..1344)
                     /gene="ARHGEF2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1462..1809
                     /gene="ARHGEF2"
                     /note="Rho guanine nucleotide exchange factor 2 Pleckstrin
                     homology (PH) domain; Region: PH_ARHGEF2; cd13393"
                     /db_xref="CDD:275428"
     misc_feature    <2257..>2688
                     /gene="ARHGEF2"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
ORIGIN      
        1 tatctaggaa atccgaggag ctgtagccac ctggaagggg gctcaggcac ctgggcaggc
       61 tcctccctga gacggaccct cagcttcatc ttgggcatga ccggaaaggc caagtcccgg
      121 gaaaaagaga aaatgaagga agccaaggac gcccgctata ccaacgggca cctcttcacc
      181 accatctccg tttcgggcat gaccatgtgc tatgcctgta acaagagcat cacagccaag
      241 gaggccctca tctgcccaac ctgcaatgtg actatccaca accgctgtaa agacaccctc
      301 gccaactgta ccaaggtcaa gcagaagcaa cagaaagctg ccctgctgaa gaacaacact
      361 gccttgcagt ctgtttcact tcgcagtaag accaccactc gggagcgtcc cagctctgcc
      421 atctacccct ccgacagctt ccgacagtcc ctgcttggct cccgccgtgg ccgctcctcc
      481 ttgtctttag ccaaaagtgt ttccaccacc aacattgctg gacacttcaa tgatgagtct
      541 cccctggggc tgcgccggat cctctcccag tccacagact ccctcaacat gcggaaccgg
      601 accctgtcag tggagtccct catcgacgaa ggtgcagagg tgatctacaa tgagttgatg
      661 agtgactttg agatggatga gaaggacttt gcagctgatt cctggagcct tgctgtggat
      721 agcaactttt tgcagcagca taaaaaggag gtgatgaagc agcaggatgt catttatgag
      781 ctgatccaga cagagctaca ccatgtgcgg accctgaaga tcatgacgcg cctcttccgc
      841 acgggaatgc tggaagagct acagctggag ccaggagtgg tccagggcct gttcccctgc
      901 gtggacgaac tcagtgacat ccatacacgc ttcctcagcc agctgttaga acgccgacgc
      961 caggccctgt gccctggcag cacccggaac ttcgtcatcc atcgcttggg tgacctgctc
     1021 atcagccagt tctcaggtcc cagcgcagag cagatgcgga agacctactc ggagttctgt
     1081 agccgccaca ccaaggcctt aaagctctat aaggagctat atgcccgaga caaacgcttc
     1141 cagcagttca tccggaaagt gacccgctcg gccgtgctga agcggcatgg tgtacaggag
     1201 tgcatcctac tggtgactca gcgcatcacc aagtacccgg tgctcatcaa ccggatcctg
     1261 cagcattccc acgggatcga ggaggagcgc caggacctga cgacggcact ggggctggtg
     1321 aaggagctgc tgtccaacgt agaccaggat gtgcacgagc tggagaaagg ggcccgcctg
     1381 caggagatct acaaccgtat ggaccctcgg gcccaggccc cggtgcctgg caagggccct
     1441 tttggccgag aggagcttct gcggcgcaag ctcatccacg atggttgcct gctctggaag
     1501 acagctactg ggcgcttcaa agatgtgctc atgctgctga tgacagatgt gctggtattt
     1561 ctccaggaga aggaccagaa gtacatcttt cctgccctgg acaagccctc ggtggtgtca
     1621 ctgcagaatc taatcgtgcg ggacatcgcc aaccaggaga aagggatgtt tctgatcagc
     1681 gcggcacccc ctgagatgta tgaggtccac acggcatccc gggatgaccg gagcacctgg
     1741 atccgcgtca ttcagcagag tgtgcgagta tgcccatcca gggaggactt ccccctgatt
     1801 gagacagagg atgaggctta cctgcggcgt atcaagatgg agctgcagca gaaagaccgg
     1861 gcactggtgg agctgctgca ggagaaggtt gggctgtttg ctgagatgac ccacttccaa
     1921 gtggaagagg atggcggcag cgggatgccg ctgcccaccc tgcccagggg gcttttccgc
     1981 tctgagtccc tcgagtcccc tcgtggcgag cggctgctgc aggatgccat ccgtgaggtg
     2041 gagggcctga aagacctgct ggtggggcct ggagtggagc tgctcttgac accccgggaa
     2101 ccaaccctgt ccatggaacc ggacagcggt ggtaacacaa gtccaggagt cactgccaat
     2161 ggtgaggcca gaaccttcaa tggctccatt gagctctgca gagctgactc agactccagc
     2221 cagaaggatc gaaatggaaa tcagctgaga tctccccagg aggaagcgtt gcagcgattg
     2281 gtcaatctct atggacttct acatggccta caggcggctg tggcccagca ggacactttg
     2341 atggaagccc ggttccctga gggccccgag cggcgggaga agctgacccg agccaactcc
     2401 cgggatgggg aggctggcag agccggcgct gcccctgtgg ctcctgaaaa gcaggctacg
     2461 gaactggcat tgctgcagcg gcaacacacg ctgctgcaag aggagctacg gcgctgccga
     2521 cgcctcggcg aagagcgggc gacagaggct ggcagcctgg aagcccggct ccgagagagc
     2581 gagcaggccc gcgccctgct ggagcgggag gccgaagagg ctcgcaggca gctggccgcc
     2641 ttgggccaca cggaaccact cccggctgag gccccctggg cccggcggcc tctggatccg
     2701 aggcggcgta gcctccctgc aggcgatgcc ctgtacttga gtttcacccc cccacagccc
     2761 agccgaggcc acgaccgcct agatttgcct gtgactattc gctccgtcca tcgacccttt
     2821 gaggatcgag agaggcagga gctgggcagc cccgacgagc ggctgcaaga tagcagtgac
     2881 cccgacaccg gcagcgagga ggaaggtagc agccgtctgt ctccgcccca tagtccacga
     2941 gacttcaccc gaatgcagga catcccggaa gagactgaga gccgtgacgg ggagcctgta
     3001 gcttcagaga gctaaggggg cccctccccc caccccatgt ccccctgaag aacattactg
     3061 agggaggcaa acctggggac tccaatctgc caatgacgag ggaacatttg aaagaactgc
     3121 tgattgtcct tgccagctct tgggatcctt ggacacgggg gcgggggggg ggcgccattt
     3181 aggaagctgg gggtattagg ccacagtgcc ccctggtggc atccagaagc tacactgcag
     3241 atgccaattt ttcatgcctt tttccctcta ctttaggaaa atttatttat ttattgttta
     3301 ttagttatgg agggagaggg gagatttaga ggaccaggga catgggaacc aagccatagg
     3361 gatcaggggg ccttgtcctt taacactact ggggtttatt caggcttaac catgcagctg
     3421 ctgggttcta gccctgacac ccctcctgag caacacccat ctttgaggag aggctgcagc
     3481 cataagaccc tactgcccct tcaggaaggg ctgtggtcag ggccatgtcc ctctcccctt
     3541 cccctcaacc tcttactgct gttctcccat ctctctgtct tcaatggaaa ccccagggag
     3601 ataacctggc ttcctagagt tgatggaata caggttgagg tggccgtaaa gggggcttgg
     3661 ggggtgaggg gaaaaactca cagggaccag aatgtttctt tgttgttgtt gttttctttt
     3721 tttgtaccaa agccaactgc acgtgtttta tatttttaag agaagattgt aggcaattag
     3781 aaatcgcagc cttctatctc tgcatctcag aagaacttga gggatggggg gaacaatgac
     3841 ttctccactc atctatagta ctgggggacc cattttgacc tcttccccag ccgtttggcc
     3901 aaacagttct tgggtgagtt gggaaatctc tacaaaccct gacctcatcc cccacctcag
     3961 caaccatgac ccgaaacctc tgcgtgaatt tgggggattt ttcaatggac ctcccccggc
     4021 ccagtgcctg ccagccccag ccagttttct gcaaatttga ttgttaaaaa aaaaaaaaag
     4081 aagaggaaaa aaaaaaaaaa gaaagggaaa aagataaaac agggaaaatt aaagtcctgg
     4141 aaccccagga agtactgtct gttaatgtct gccagttctg agggtgctgg tgagggggag
     4201 agccaggcaa tgacgtgtgt tcctccaaaa ggagcctctt cctctcccag gaagggtgac
     4261 tgcctccctg aagacagggg gcgctaacaa aagaaactgc tgcccacctt ttttttgctg
     4321 tcatctttga cgctcacaaa tacaaggata ataatgaagg gacacttagg ttccagtggc
     4381 tgttggaggt tccaacatta aaaaacttgt tttcatctca
//
LOCUS       XM_032614495            4540 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho/Rac guanine nucleotide exchange
            factor 2 (ARHGEF2), transcript variant X4, mRNA.
ACCESSION   XM_032614495
VERSION     XM_032614495.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4540
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4540
                     /gene="ARHGEF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 42 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744564"
     CDS             217..3135
                     /gene="ARHGEF2"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 2 isoform
                     X3"
                     /protein_id="XP_032470386.1"
                     /db_xref="GeneID:116744564"
                     /translation="MTGKAKSREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKS
                     ITAKEALICPTCNVTIHNRCKDTLANCTKVKQKQQKAALLKNNTALQSVSLRSKTTTR
                     ERPSSAIYPSDSFRQSLLGSRRGRSSLSLAKSVSTTNIAGHFNDESPLGLRRILSQST
                     DSLNMRNRTLSVESLIDEGAEVIYNELMSDFEMDEKDFAADSWSLAVDSNFLQQHKKE
                     VMKQQDVIYELIQTELHHVRTLKIMTRLFRTGMLEELQLEPGVVQGLFPCVDELSDIH
                     TRFLSQLLERRRQALCPGSTRNFVIHRLGDLLISQFSGPSAEQMRKTYSEFCSRHTKA
                     LKLYKELYARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSH
                     GIEEERQDLTTALGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQAPVPGKGPFG
                     REELLRRKLIHDGCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALDKPSVVS
                     LQNLIVRDIANQEKGMFLISAAPPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFP
                     LIETEDEAYLRRIKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGGSGMPLPTLPR
                     GLFRSESLESPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPTLSMEPDSGGNTS
                     PGVTANGEARTFNGSIELCRADSDSSQKDRNGNQLRSPQEEALQRLVNLYGLLHGLQA
                     AVAQQDTLMEARFPEGPERREKLTRANSRDGEAGRAGAAPVAPEKQATELALLQRQHT
                     LLQEELRRCRRLGEERATEAGSLEARLRESEQARALLEREAEEARRQLAALGHTEPLP
                     AEAPWARRPLDPRRRSLPAGDALYLSFTPPQPSRGHDRLDLPVTIRSVHRPFEDRERQ
                     ELGSPDERLQDSSDPDTGSEEEGSSRLSPPHSPRDFTRMQDIPEETESRDGEPVASES
                     "
     misc_feature    274..456
                     /gene="ARHGEF2"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in Rho guanine nucleotide exchange factor 2
                     (ARHGEF2) and similar proteins; Region: C1_ARHGEF2;
                     cd20877"
                     /db_xref="CDD:410427"
     misc_feature    880..1464
                     /gene="ARHGEF2"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(898..900,910..912,1231..1233,1315..1320,1327..1332,
                     1336..1341,1348..1353,1360..1365,1372..1374,1450..1452,
                     1462..1464)
                     /gene="ARHGEF2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1582..1929
                     /gene="ARHGEF2"
                     /note="Rho guanine nucleotide exchange factor 2 Pleckstrin
                     homology (PH) domain; Region: PH_ARHGEF2; cd13393"
                     /db_xref="CDD:275428"
     misc_feature    <2377..>2808
                     /gene="ARHGEF2"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
ORIGIN      
        1 agaggccctt tccaaacagc agggagggtc gtacacagga ctcttgtttt gtgaggggaa
       61 aacgtcccct tggagagccc ccctccctgt atcatttccg ttgggaagca gcatgaaaga
      121 ggagattggg cctggattag ctgtagccac ctggaagggg gctcaggcac ctgggcaggc
      181 tcctccctga gacggaccct cagcttcatc ttgggcatga ccggaaaggc caagtcccgg
      241 gaaaaagaga aaatgaagga agccaaggac gcccgctata ccaacgggca cctcttcacc
      301 accatctccg tttcgggcat gaccatgtgc tatgcctgta acaagagcat cacagccaag
      361 gaggccctca tctgcccaac ctgcaatgtg actatccaca accgctgtaa agacaccctc
      421 gccaactgta ccaaggtcaa gcagaagcaa cagaaagctg ccctgctgaa gaacaacact
      481 gccttgcagt ctgtttcact tcgcagtaag accaccactc gggagcgtcc cagctctgcc
      541 atctacccct ccgacagctt ccgacagtcc ctgcttggct cccgccgtgg ccgctcctcc
      601 ttgtctttag ccaaaagtgt ttccaccacc aacattgctg gacacttcaa tgatgagtct
      661 cccctggggc tgcgccggat cctctcccag tccacagact ccctcaacat gcggaaccgg
      721 accctgtcag tggagtccct catcgacgaa ggtgcagagg tgatctacaa tgagttgatg
      781 agtgactttg agatggatga gaaggacttt gcagctgatt cctggagcct tgctgtggat
      841 agcaactttt tgcagcagca taaaaaggag gtgatgaagc agcaggatgt catttatgag
      901 ctgatccaga cagagctaca ccatgtgcgg accctgaaga tcatgacgcg cctcttccgc
      961 acgggaatgc tggaagagct acagctggag ccaggagtgg tccagggcct gttcccctgc
     1021 gtggacgaac tcagtgacat ccatacacgc ttcctcagcc agctgttaga acgccgacgc
     1081 caggccctgt gccctggcag cacccggaac ttcgtcatcc atcgcttggg tgacctgctc
     1141 atcagccagt tctcaggtcc cagcgcagag cagatgcgga agacctactc ggagttctgt
     1201 agccgccaca ccaaggcctt aaagctctat aaggagctat atgcccgaga caaacgcttc
     1261 cagcagttca tccggaaagt gacccgctcg gccgtgctga agcggcatgg tgtacaggag
     1321 tgcatcctac tggtgactca gcgcatcacc aagtacccgg tgctcatcaa ccggatcctg
     1381 cagcattccc acgggatcga ggaggagcgc caggacctga cgacggcact ggggctggtg
     1441 aaggagctgc tgtccaacgt agaccaggat gtgcacgagc tggagaaagg ggcccgcctg
     1501 caggagatct acaaccgtat ggaccctcgg gcccaggccc cggtgcctgg caagggccct
     1561 tttggccgag aggagcttct gcggcgcaag ctcatccacg atggttgcct gctctggaag
     1621 acagctactg ggcgcttcaa agatgtgctc atgctgctga tgacagatgt gctggtattt
     1681 ctccaggaga aggaccagaa gtacatcttt cctgccctgg acaagccctc ggtggtgtca
     1741 ctgcagaatc taatcgtgcg ggacatcgcc aaccaggaga aagggatgtt tctgatcagc
     1801 gcggcacccc ctgagatgta tgaggtccac acggcatccc gggatgaccg gagcacctgg
     1861 atccgcgtca ttcagcagag tgtgcgagta tgcccatcca gggaggactt ccccctgatt
     1921 gagacagagg atgaggctta cctgcggcgt atcaagatgg agctgcagca gaaagaccgg
     1981 gcactggtgg agctgctgca ggagaaggtt gggctgtttg ctgagatgac ccacttccaa
     2041 gtggaagagg atggcggcag cgggatgccg ctgcccaccc tgcccagggg gcttttccgc
     2101 tctgagtccc tcgagtcccc tcgtggcgag cggctgctgc aggatgccat ccgtgaggtg
     2161 gagggcctga aagacctgct ggtggggcct ggagtggagc tgctcttgac accccgggaa
     2221 ccaaccctgt ccatggaacc ggacagcggt ggtaacacaa gtccaggagt cactgccaat
     2281 ggtgaggcca gaaccttcaa tggctccatt gagctctgca gagctgactc agactccagc
     2341 cagaaggatc gaaatggaaa tcagctgaga tctccccagg aggaagcgtt gcagcgattg
     2401 gtcaatctct atggacttct acatggccta caggcggctg tggcccagca ggacactttg
     2461 atggaagccc ggttccctga gggccccgag cggcgggaga agctgacccg agccaactcc
     2521 cgggatgggg aggctggcag agccggcgct gcccctgtgg ctcctgaaaa gcaggctacg
     2581 gaactggcat tgctgcagcg gcaacacacg ctgctgcaag aggagctacg gcgctgccga
     2641 cgcctcggcg aagagcgggc gacagaggct ggcagcctgg aagcccggct ccgagagagc
     2701 gagcaggccc gcgccctgct ggagcgggag gccgaagagg ctcgcaggca gctggccgcc
     2761 ttgggccaca cggaaccact cccggctgag gccccctggg cccggcggcc tctggatccg
     2821 aggcggcgta gcctccctgc aggcgatgcc ctgtacttga gtttcacccc cccacagccc
     2881 agccgaggcc acgaccgcct agatttgcct gtgactattc gctccgtcca tcgacccttt
     2941 gaggatcgag agaggcagga gctgggcagc cccgacgagc ggctgcaaga tagcagtgac
     3001 cccgacaccg gcagcgagga ggaaggtagc agccgtctgt ctccgcccca tagtccacga
     3061 gacttcaccc gaatgcagga catcccggaa gagactgaga gccgtgacgg ggagcctgta
     3121 gcttcagaga gctaaggggg cccctccccc caccccatgt ccccctgaag aacattactg
     3181 agggaggcaa acctggggac tccaatctgc caatgacgag ggaacatttg aaagaactgc
     3241 tgattgtcct tgccagctct tgggatcctt ggacacgggg gcgggggggg ggcgccattt
     3301 aggaagctgg gggtattagg ccacagtgcc ccctggtggc atccagaagc tacactgcag
     3361 atgccaattt ttcatgcctt tttccctcta ctttaggaaa atttatttat ttattgttta
     3421 ttagttatgg agggagaggg gagatttaga ggaccaggga catgggaacc aagccatagg
     3481 gatcaggggg ccttgtcctt taacactact ggggtttatt caggcttaac catgcagctg
     3541 ctgggttcta gccctgacac ccctcctgag caacacccat ctttgaggag aggctgcagc
     3601 cataagaccc tactgcccct tcaggaaggg ctgtggtcag ggccatgtcc ctctcccctt
     3661 cccctcaacc tcttactgct gttctcccat ctctctgtct tcaatggaaa ccccagggag
     3721 ataacctggc ttcctagagt tgatggaata caggttgagg tggccgtaaa gggggcttgg
     3781 ggggtgaggg gaaaaactca cagggaccag aatgtttctt tgttgttgtt gttttctttt
     3841 tttgtaccaa agccaactgc acgtgtttta tatttttaag agaagattgt aggcaattag
     3901 aaatcgcagc cttctatctc tgcatctcag aagaacttga gggatggggg gaacaatgac
     3961 ttctccactc atctatagta ctgggggacc cattttgacc tcttccccag ccgtttggcc
     4021 aaacagttct tgggtgagtt gggaaatctc tacaaaccct gacctcatcc cccacctcag
     4081 caaccatgac ccgaaacctc tgcgtgaatt tgggggattt ttcaatggac ctcccccggc
     4141 ccagtgcctg ccagccccag ccagttttct gcaaatttga ttgttaaaaa aaaaaaaaag
     4201 aagaggaaaa aaaaaaaaaa gaaagggaaa aagataaaac agggaaaatt aaagtcctgg
     4261 aaccccagga agtactgtct gttaatgtct gccagttctg agggtgctgg tgagggggag
     4321 agccaggcaa tgacgtgtgt tcctccaaaa ggagcctctt cctctcccag gaagggtgac
     4381 tgcctccctg aagacagggg gcgctaacaa aagaaactgc tgcccacctt ttttttgctg
     4441 tcatctttga cgctcacaaa tacaaggata ataatgaagg gacacttagg ttccagtggc
     4501 tgttggaggt tccaacatta aaaaacttgt tttcatctca
//
LOCUS       XM_032614504            4465 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho/Rac guanine nucleotide exchange
            factor 2 (ARHGEF2), transcript variant X5, mRNA.
ACCESSION   XM_032614504
VERSION     XM_032614504.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4465
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4465
                     /gene="ARHGEF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 42 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744564"
     CDS             178..3060
                     /gene="ARHGEF2"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 2 isoform
                     X4"
                     /protein_id="XP_032470395.1"
                     /db_xref="GeneID:116744564"
                     /translation="MKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTC
                     NVTIHNRCKDTLANCTKVKQKQQKAALLKNNTALQSVSLRSKTTTRERPSSAIYPSDS
                     FRQSLLGSRRGRSSLSLAKSVSTTNIAGHFNDESPLGLRRILSQSTDSLNMRNRTLSV
                     ESLIDEGAEVIYNELMSDFEMDEKDFAADSWSLAVDSNFLQQHKKEVMKQQDVIYELI
                     QTELHHVRTLKIMTRLFRTGMLEELQLEPGVVQGLFPCVDELSDIHTRFLSQLLERRR
                     QALCPGSTRNFVIHRLGDLLISQFSGPSAEQMRKTYSEFCSRHTKALKLYKELYARDK
                     RFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSHGIEEERQDLTTA
                     LGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQAPVPGKGPFGREELLRRKLIHD
                     GCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALDKPSVVSLQNLIVRDIANQ
                     EKGMFLISAAPPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFPLIETEDEAYLRR
                     IKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGGSGMPLPTLPRGLFRSESLESPR
                     GERLLQDAIREVEGLKDLLVGPGVELLLTPREPTLSMEPDSGGNTSPGVTANGEARTF
                     NGSIELCRADSDSSQKDRNGNQLRSPQEEALQRLVNLYGLLHGLQAAVAQQDTLMEAR
                     FPEGPERREKLTRANSRDGEAGRAGAAPVAPEKQATELALLQRQHTLLQEELRRCRRL
                     GEERATEAGSLEARLRESEQARALLEREAEEARRQLAALGHTEPLPAEAPWARRPLDP
                     RRRSLPAGDALYLSFTPPQPSRGHDRLDLPVTIRSVHRPFEDRERQELGSPDERLQDS
                     SDPDTGSEEEGSSRLSPPHSPRDFTRMQDIPEETESRDGEPVASES"
     misc_feature    199..381
                     /gene="ARHGEF2"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in Rho guanine nucleotide exchange factor 2
                     (ARHGEF2) and similar proteins; Region: C1_ARHGEF2;
                     cd20877"
                     /db_xref="CDD:410427"
     misc_feature    805..1389
                     /gene="ARHGEF2"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(823..825,835..837,1156..1158,1240..1245,1252..1257,
                     1261..1266,1273..1278,1285..1290,1297..1299,1375..1377,
                     1387..1389)
                     /gene="ARHGEF2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1507..1854
                     /gene="ARHGEF2"
                     /note="Rho guanine nucleotide exchange factor 2 Pleckstrin
                     homology (PH) domain; Region: PH_ARHGEF2; cd13393"
                     /db_xref="CDD:275428"
     misc_feature    <2302..>2733
                     /gene="ARHGEF2"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
ORIGIN      
        1 gagtggggag ggggctgggg gagcagtaga cacgacccgg agcctccagc tccgagcaga
       61 ttgtctgccg ggatcccggg agccagcgga cctggggttt aggggcttcc tatctggcgg
      121 gaccgggtgt tttgggccgc gtgaaagaaa gttgctccgt cccgggaaaa agagaaaatg
      181 aaggaagcca aggacgcccg ctataccaac gggcacctct tcaccaccat ctccgtttcg
      241 ggcatgacca tgtgctatgc ctgtaacaag agcatcacag ccaaggaggc cctcatctgc
      301 ccaacctgca atgtgactat ccacaaccgc tgtaaagaca ccctcgccaa ctgtaccaag
      361 gtcaagcaga agcaacagaa agctgccctg ctgaagaaca acactgcctt gcagtctgtt
      421 tcacttcgca gtaagaccac cactcgggag cgtcccagct ctgccatcta cccctccgac
      481 agcttccgac agtccctgct tggctcccgc cgtggccgct cctccttgtc tttagccaaa
      541 agtgtttcca ccaccaacat tgctggacac ttcaatgatg agtctcccct ggggctgcgc
      601 cggatcctct cccagtccac agactccctc aacatgcgga accggaccct gtcagtggag
      661 tccctcatcg acgaaggtgc agaggtgatc tacaatgagt tgatgagtga ctttgagatg
      721 gatgagaagg actttgcagc tgattcctgg agccttgctg tggatagcaa ctttttgcag
      781 cagcataaaa aggaggtgat gaagcagcag gatgtcattt atgagctgat ccagacagag
      841 ctacaccatg tgcggaccct gaagatcatg acgcgcctct tccgcacggg aatgctggaa
      901 gagctacagc tggagccagg agtggtccag ggcctgttcc cctgcgtgga cgaactcagt
      961 gacatccata cacgcttcct cagccagctg ttagaacgcc gacgccaggc cctgtgccct
     1021 ggcagcaccc ggaacttcgt catccatcgc ttgggtgacc tgctcatcag ccagttctca
     1081 ggtcccagcg cagagcagat gcggaagacc tactcggagt tctgtagccg ccacaccaag
     1141 gccttaaagc tctataagga gctatatgcc cgagacaaac gcttccagca gttcatccgg
     1201 aaagtgaccc gctcggccgt gctgaagcgg catggtgtac aggagtgcat cctactggtg
     1261 actcagcgca tcaccaagta cccggtgctc atcaaccgga tcctgcagca ttcccacggg
     1321 atcgaggagg agcgccagga cctgacgacg gcactggggc tggtgaagga gctgctgtcc
     1381 aacgtagacc aggatgtgca cgagctggag aaaggggccc gcctgcagga gatctacaac
     1441 cgtatggacc ctcgggccca ggccccggtg cctggcaagg gcccttttgg ccgagaggag
     1501 cttctgcggc gcaagctcat ccacgatggt tgcctgctct ggaagacagc tactgggcgc
     1561 ttcaaagatg tgctcatgct gctgatgaca gatgtgctgg tatttctcca ggagaaggac
     1621 cagaagtaca tctttcctgc cctggacaag ccctcggtgg tgtcactgca gaatctaatc
     1681 gtgcgggaca tcgccaacca ggagaaaggg atgtttctga tcagcgcggc accccctgag
     1741 atgtatgagg tccacacggc atcccgggat gaccggagca cctggatccg cgtcattcag
     1801 cagagtgtgc gagtatgccc atccagggag gacttccccc tgattgagac agaggatgag
     1861 gcttacctgc ggcgtatcaa gatggagctg cagcagaaag accgggcact ggtggagctg
     1921 ctgcaggaga aggttgggct gtttgctgag atgacccact tccaagtgga agaggatggc
     1981 ggcagcggga tgccgctgcc caccctgccc agggggcttt tccgctctga gtccctcgag
     2041 tcccctcgtg gcgagcggct gctgcaggat gccatccgtg aggtggaggg cctgaaagac
     2101 ctgctggtgg ggcctggagt ggagctgctc ttgacacccc gggaaccaac cctgtccatg
     2161 gaaccggaca gcggtggtaa cacaagtcca ggagtcactg ccaatggtga ggccagaacc
     2221 ttcaatggct ccattgagct ctgcagagct gactcagact ccagccagaa ggatcgaaat
     2281 ggaaatcagc tgagatctcc ccaggaggaa gcgttgcagc gattggtcaa tctctatgga
     2341 cttctacatg gcctacaggc ggctgtggcc cagcaggaca ctttgatgga agcccggttc
     2401 cctgagggcc ccgagcggcg ggagaagctg acccgagcca actcccggga tggggaggct
     2461 ggcagagccg gcgctgcccc tgtggctcct gaaaagcagg ctacggaact ggcattgctg
     2521 cagcggcaac acacgctgct gcaagaggag ctacggcgct gccgacgcct cggcgaagag
     2581 cgggcgacag aggctggcag cctggaagcc cggctccgag agagcgagca ggcccgcgcc
     2641 ctgctggagc gggaggccga agaggctcgc aggcagctgg ccgccttggg ccacacggaa
     2701 ccactcccgg ctgaggcccc ctgggcccgg cggcctctgg atccgaggcg gcgtagcctc
     2761 cctgcaggcg atgccctgta cttgagtttc acccccccac agcccagccg aggccacgac
     2821 cgcctagatt tgcctgtgac tattcgctcc gtccatcgac cctttgagga tcgagagagg
     2881 caggagctgg gcagccccga cgagcggctg caagatagca gtgaccccga caccggcagc
     2941 gaggaggaag gtagcagccg tctgtctccg ccccatagtc cacgagactt cacccgaatg
     3001 caggacatcc cggaagagac tgagagccgt gacggggagc ctgtagcttc agagagctaa
     3061 gggggcccct ccccccaccc catgtccccc tgaagaacat tactgaggga ggcaaacctg
     3121 gggactccaa tctgccaatg acgagggaac atttgaaaga actgctgatt gtccttgcca
     3181 gctcttggga tccttggaca cgggggcggg gggggggcgc catttaggaa gctgggggta
     3241 ttaggccaca gtgccccctg gtggcatcca gaagctacac tgcagatgcc aatttttcat
     3301 gcctttttcc ctctacttta ggaaaattta tttatttatt gtttattagt tatggaggga
     3361 gaggggagat ttagaggacc agggacatgg gaaccaagcc atagggatca gggggccttg
     3421 tcctttaaca ctactggggt ttattcaggc ttaaccatgc agctgctggg ttctagccct
     3481 gacacccctc ctgagcaaca cccatctttg aggagaggct gcagccataa gaccctactg
     3541 ccccttcagg aagggctgtg gtcagggcca tgtccctctc cccttcccct caacctctta
     3601 ctgctgttct cccatctctc tgtcttcaat ggaaacccca gggagataac ctggcttcct
     3661 agagttgatg gaatacaggt tgaggtggcc gtaaaggggg cttggggggt gaggggaaaa
     3721 actcacaggg accagaatgt ttctttgttg ttgttgtttt ctttttttgt accaaagcca
     3781 actgcacgtg ttttatattt ttaagagaag attgtaggca attagaaatc gcagccttct
     3841 atctctgcat ctcagaagaa cttgagggat ggggggaaca atgacttctc cactcatcta
     3901 tagtactggg ggacccattt tgacctcttc cccagccgtt tggccaaaca gttcttgggt
     3961 gagttgggaa atctctacaa accctgacct catcccccac ctcagcaacc atgacccgaa
     4021 acctctgcgt gaatttgggg gatttttcaa tggacctccc ccggcccagt gcctgccagc
     4081 cccagccagt tttctgcaaa tttgattgtt aaaaaaaaaa aaaagaagag gaaaaaaaaa
     4141 aaaaagaaag ggaaaaagat aaaacaggga aaattaaagt cctggaaccc caggaagtac
     4201 tgtctgttaa tgtctgccag ttctgagggt gctggtgagg gggagagcca ggcaatgacg
     4261 tgtgttcctc caaaaggagc ctcttcctct cccaggaagg gtgactgcct ccctgaagac
     4321 agggggcgct aacaaaagaa actgctgccc accttttttt tgctgtcatc tttgacgctc
     4381 acaaatacaa ggataataat gaagggacac ttaggttcca gtggctgttg gaggttccaa
     4441 cattaaaaaa cttgttttca tctca
//
LOCUS       XM_032614514            5302 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho/Rac guanine nucleotide exchange
            factor 2 (ARHGEF2), transcript variant X6, mRNA.
ACCESSION   XM_032614514
VERSION     XM_032614514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5302
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5302
                     /gene="ARHGEF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 42 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744564"
     CDS             1015..3897
                     /gene="ARHGEF2"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 2 isoform
                     X4"
                     /protein_id="XP_032470405.1"
                     /db_xref="GeneID:116744564"
                     /translation="MKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTC
                     NVTIHNRCKDTLANCTKVKQKQQKAALLKNNTALQSVSLRSKTTTRERPSSAIYPSDS
                     FRQSLLGSRRGRSSLSLAKSVSTTNIAGHFNDESPLGLRRILSQSTDSLNMRNRTLSV
                     ESLIDEGAEVIYNELMSDFEMDEKDFAADSWSLAVDSNFLQQHKKEVMKQQDVIYELI
                     QTELHHVRTLKIMTRLFRTGMLEELQLEPGVVQGLFPCVDELSDIHTRFLSQLLERRR
                     QALCPGSTRNFVIHRLGDLLISQFSGPSAEQMRKTYSEFCSRHTKALKLYKELYARDK
                     RFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSHGIEEERQDLTTA
                     LGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQAPVPGKGPFGREELLRRKLIHD
                     GCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALDKPSVVSLQNLIVRDIANQ
                     EKGMFLISAAPPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFPLIETEDEAYLRR
                     IKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGGSGMPLPTLPRGLFRSESLESPR
                     GERLLQDAIREVEGLKDLLVGPGVELLLTPREPTLSMEPDSGGNTSPGVTANGEARTF
                     NGSIELCRADSDSSQKDRNGNQLRSPQEEALQRLVNLYGLLHGLQAAVAQQDTLMEAR
                     FPEGPERREKLTRANSRDGEAGRAGAAPVAPEKQATELALLQRQHTLLQEELRRCRRL
                     GEERATEAGSLEARLRESEQARALLEREAEEARRQLAALGHTEPLPAEAPWARRPLDP
                     RRRSLPAGDALYLSFTPPQPSRGHDRLDLPVTIRSVHRPFEDRERQELGSPDERLQDS
                     SDPDTGSEEEGSSRLSPPHSPRDFTRMQDIPEETESRDGEPVASES"
     misc_feature    1036..1218
                     /gene="ARHGEF2"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in Rho guanine nucleotide exchange factor 2
                     (ARHGEF2) and similar proteins; Region: C1_ARHGEF2;
                     cd20877"
                     /db_xref="CDD:410427"
     misc_feature    1642..2226
                     /gene="ARHGEF2"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1660..1662,1672..1674,1993..1995,2077..2082,
                     2089..2094,2098..2103,2110..2115,2122..2127,2134..2136,
                     2212..2214,2224..2226)
                     /gene="ARHGEF2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2344..2691
                     /gene="ARHGEF2"
                     /note="Rho guanine nucleotide exchange factor 2 Pleckstrin
                     homology (PH) domain; Region: PH_ARHGEF2; cd13393"
                     /db_xref="CDD:275428"
     misc_feature    <3139..>3570
                     /gene="ARHGEF2"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
ORIGIN      
        1 tggcttcagc tgagagtcag gactaggcct ccaaggtcca ggctgaggat tctcctctga
       61 gttttgtttc actgccccgg ggccccagac agtgagtgtc ctctgacttg gggctcatta
      121 ccctcagcct cagccatcag gatctcgctc ttcgctttct gagaggcagg gaatccttgg
      181 agggagtggt cttgccaggt cctcttcctg ctgtcagtcc tctaagagtg gagggaaaat
      241 cagggatctg aggtgaccac tgaggagggt cctggaatag gtggaaagca tggtgtccca
      301 tcttcttatc tcctcagttt cagggaaagc tcaggagctt gagaaaggac agaaagaggt
      361 tagggagaat cacttgacct gcagaggtca gggggaagca ggagaagaga aagctgatgg
      421 gaaatgccag cctctgaggt tctgtggaag cgcctggaga gtgtgcccca tctcgacgga
      481 gaccagagcg ggaggaagtg acattgccac tggaggttgg agggtagatg ctagaaagga
      541 cttcctagac taattgggtg aggaggaata aaggagatat cctaggtttt ggagggtagc
      601 atgagaggga taaaagttag actgcagaag agacttcctg ccgggaatga gaccttggtg
      661 gcccagtttc ctttcttaaa gatcccagag aggacaagtg acccgagact gaaaccaggc
      721 tcctcctgcc ttgaggttag caggggacat gctgcctccc acagagaggc cccgtgtacc
      781 ttggctgagc agatatggaa gagtcagaag tttgggatcc tgacctctgg ttgggggtgg
      841 cagtggaggc attctgcccc cttcagccaa tctaataagg ggatctcctg ccccccactg
      901 tgactgccac tgccacggag atagcggaga tagcggctcc aacactggtt gtcatggtta
      961 taagaggagc taactcccat agatttgaaa gcgctgtccc gggaaaaaga gaaaatgaag
     1021 gaagccaagg acgcccgcta taccaacggg cacctcttca ccaccatctc cgtttcgggc
     1081 atgaccatgt gctatgcctg taacaagagc atcacagcca aggaggccct catctgccca
     1141 acctgcaatg tgactatcca caaccgctgt aaagacaccc tcgccaactg taccaaggtc
     1201 aagcagaagc aacagaaagc tgccctgctg aagaacaaca ctgccttgca gtctgtttca
     1261 cttcgcagta agaccaccac tcgggagcgt cccagctctg ccatctaccc ctccgacagc
     1321 ttccgacagt ccctgcttgg ctcccgccgt ggccgctcct ccttgtcttt agccaaaagt
     1381 gtttccacca ccaacattgc tggacacttc aatgatgagt ctcccctggg gctgcgccgg
     1441 atcctctccc agtccacaga ctccctcaac atgcggaacc ggaccctgtc agtggagtcc
     1501 ctcatcgacg aaggtgcaga ggtgatctac aatgagttga tgagtgactt tgagatggat
     1561 gagaaggact ttgcagctga ttcctggagc cttgctgtgg atagcaactt tttgcagcag
     1621 cataaaaagg aggtgatgaa gcagcaggat gtcatttatg agctgatcca gacagagcta
     1681 caccatgtgc ggaccctgaa gatcatgacg cgcctcttcc gcacgggaat gctggaagag
     1741 ctacagctgg agccaggagt ggtccagggc ctgttcccct gcgtggacga actcagtgac
     1801 atccatacac gcttcctcag ccagctgtta gaacgccgac gccaggccct gtgccctggc
     1861 agcacccgga acttcgtcat ccatcgcttg ggtgacctgc tcatcagcca gttctcaggt
     1921 cccagcgcag agcagatgcg gaagacctac tcggagttct gtagccgcca caccaaggcc
     1981 ttaaagctct ataaggagct atatgcccga gacaaacgct tccagcagtt catccggaaa
     2041 gtgacccgct cggccgtgct gaagcggcat ggtgtacagg agtgcatcct actggtgact
     2101 cagcgcatca ccaagtaccc ggtgctcatc aaccggatcc tgcagcattc ccacgggatc
     2161 gaggaggagc gccaggacct gacgacggca ctggggctgg tgaaggagct gctgtccaac
     2221 gtagaccagg atgtgcacga gctggagaaa ggggcccgcc tgcaggagat ctacaaccgt
     2281 atggaccctc gggcccaggc cccggtgcct ggcaagggcc cttttggccg agaggagctt
     2341 ctgcggcgca agctcatcca cgatggttgc ctgctctgga agacagctac tgggcgcttc
     2401 aaagatgtgc tcatgctgct gatgacagat gtgctggtat ttctccagga gaaggaccag
     2461 aagtacatct ttcctgccct ggacaagccc tcggtggtgt cactgcagaa tctaatcgtg
     2521 cgggacatcg ccaaccagga gaaagggatg tttctgatca gcgcggcacc ccctgagatg
     2581 tatgaggtcc acacggcatc ccgggatgac cggagcacct ggatccgcgt cattcagcag
     2641 agtgtgcgag tatgcccatc cagggaggac ttccccctga ttgagacaga ggatgaggct
     2701 tacctgcggc gtatcaagat ggagctgcag cagaaagacc gggcactggt ggagctgctg
     2761 caggagaagg ttgggctgtt tgctgagatg acccacttcc aagtggaaga ggatggcggc
     2821 agcgggatgc cgctgcccac cctgcccagg gggcttttcc gctctgagtc cctcgagtcc
     2881 cctcgtggcg agcggctgct gcaggatgcc atccgtgagg tggagggcct gaaagacctg
     2941 ctggtggggc ctggagtgga gctgctcttg acaccccggg aaccaaccct gtccatggaa
     3001 ccggacagcg gtggtaacac aagtccagga gtcactgcca atggtgaggc cagaaccttc
     3061 aatggctcca ttgagctctg cagagctgac tcagactcca gccagaagga tcgaaatgga
     3121 aatcagctga gatctcccca ggaggaagcg ttgcagcgat tggtcaatct ctatggactt
     3181 ctacatggcc tacaggcggc tgtggcccag caggacactt tgatggaagc ccggttccct
     3241 gagggccccg agcggcggga gaagctgacc cgagccaact cccgggatgg ggaggctggc
     3301 agagccggcg ctgcccctgt ggctcctgaa aagcaggcta cggaactggc attgctgcag
     3361 cggcaacaca cgctgctgca agaggagcta cggcgctgcc gacgcctcgg cgaagagcgg
     3421 gcgacagagg ctggcagcct ggaagcccgg ctccgagaga gcgagcaggc ccgcgccctg
     3481 ctggagcggg aggccgaaga ggctcgcagg cagctggccg ccttgggcca cacggaacca
     3541 ctcccggctg aggccccctg ggcccggcgg cctctggatc cgaggcggcg tagcctccct
     3601 gcaggcgatg ccctgtactt gagtttcacc cccccacagc ccagccgagg ccacgaccgc
     3661 ctagatttgc ctgtgactat tcgctccgtc catcgaccct ttgaggatcg agagaggcag
     3721 gagctgggca gccccgacga gcggctgcaa gatagcagtg accccgacac cggcagcgag
     3781 gaggaaggta gcagccgtct gtctccgccc catagtccac gagacttcac ccgaatgcag
     3841 gacatcccgg aagagactga gagccgtgac ggggagcctg tagcttcaga gagctaaggg
     3901 ggcccctccc cccaccccat gtccccctga agaacattac tgagggaggc aaacctgggg
     3961 actccaatct gccaatgacg agggaacatt tgaaagaact gctgattgtc cttgccagct
     4021 cttgggatcc ttggacacgg gggcgggggg ggggcgccat ttaggaagct gggggtatta
     4081 ggccacagtg ccccctggtg gcatccagaa gctacactgc agatgccaat ttttcatgcc
     4141 tttttccctc tactttagga aaatttattt atttattgtt tattagttat ggagggagag
     4201 gggagattta gaggaccagg gacatgggaa ccaagccata gggatcaggg ggccttgtcc
     4261 tttaacacta ctggggttta ttcaggctta accatgcagc tgctgggttc tagccctgac
     4321 acccctcctg agcaacaccc atctttgagg agaggctgca gccataagac cctactgccc
     4381 cttcaggaag ggctgtggtc agggccatgt ccctctcccc ttcccctcaa cctcttactg
     4441 ctgttctccc atctctctgt cttcaatgga aaccccaggg agataacctg gcttcctaga
     4501 gttgatggaa tacaggttga ggtggccgta aagggggctt ggggggtgag gggaaaaact
     4561 cacagggacc agaatgtttc tttgttgttg ttgttttctt tttttgtacc aaagccaact
     4621 gcacgtgttt tatattttta agagaagatt gtaggcaatt agaaatcgca gccttctatc
     4681 tctgcatctc agaagaactt gagggatggg gggaacaatg acttctccac tcatctatag
     4741 tactggggga cccattttga cctcttcccc agccgtttgg ccaaacagtt cttgggtgag
     4801 ttgggaaatc tctacaaacc ctgacctcat cccccacctc agcaaccatg acccgaaacc
     4861 tctgcgtgaa tttgggggat ttttcaatgg acctcccccg gcccagtgcc tgccagcccc
     4921 agccagtttt ctgcaaattt gattgttaaa aaaaaaaaaa agaagaggaa aaaaaaaaaa
     4981 aagaaaggga aaaagataaa acagggaaaa ttaaagtcct ggaaccccag gaagtactgt
     5041 ctgttaatgt ctgccagttc tgagggtgct ggtgaggggg agagccaggc aatgacgtgt
     5101 gttcctccaa aaggagcctc ttcctctccc aggaagggtg actgcctccc tgaagacagg
     5161 gggcgctaac aaaagaaact gctgcccacc ttttttttgc tgtcatcttt gacgctcaca
     5221 aatacaagga taataatgaa gggacactta ggttccagtg gctgttggag gttccaacat
     5281 taaaaaactt gttttcatct ca
//
LOCUS       XM_032614524            4324 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho/Rac guanine nucleotide exchange
            factor 2 (ARHGEF2), transcript variant X7, mRNA.
ACCESSION   XM_032614524
VERSION     XM_032614524.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4324
                     /gene="ARHGEF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 41 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744564"
     CDS             37..2919
                     /gene="ARHGEF2"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 2 isoform
                     X4"
                     /protein_id="XP_032470415.1"
                     /db_xref="GeneID:116744564"
                     /translation="MKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTC
                     NVTIHNRCKDTLANCTKVKQKQQKAALLKNNTALQSVSLRSKTTTRERPSSAIYPSDS
                     FRQSLLGSRRGRSSLSLAKSVSTTNIAGHFNDESPLGLRRILSQSTDSLNMRNRTLSV
                     ESLIDEGAEVIYNELMSDFEMDEKDFAADSWSLAVDSNFLQQHKKEVMKQQDVIYELI
                     QTELHHVRTLKIMTRLFRTGMLEELQLEPGVVQGLFPCVDELSDIHTRFLSQLLERRR
                     QALCPGSTRNFVIHRLGDLLISQFSGPSAEQMRKTYSEFCSRHTKALKLYKELYARDK
                     RFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSHGIEEERQDLTTA
                     LGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQAPVPGKGPFGREELLRRKLIHD
                     GCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALDKPSVVSLQNLIVRDIANQ
                     EKGMFLISAAPPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFPLIETEDEAYLRR
                     IKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGGSGMPLPTLPRGLFRSESLESPR
                     GERLLQDAIREVEGLKDLLVGPGVELLLTPREPTLSMEPDSGGNTSPGVTANGEARTF
                     NGSIELCRADSDSSQKDRNGNQLRSPQEEALQRLVNLYGLLHGLQAAVAQQDTLMEAR
                     FPEGPERREKLTRANSRDGEAGRAGAAPVAPEKQATELALLQRQHTLLQEELRRCRRL
                     GEERATEAGSLEARLRESEQARALLEREAEEARRQLAALGHTEPLPAEAPWARRPLDP
                     RRRSLPAGDALYLSFTPPQPSRGHDRLDLPVTIRSVHRPFEDRERQELGSPDERLQDS
                     SDPDTGSEEEGSSRLSPPHSPRDFTRMQDIPEETESRDGEPVASES"
     misc_feature    58..240
                     /gene="ARHGEF2"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in Rho guanine nucleotide exchange factor 2
                     (ARHGEF2) and similar proteins; Region: C1_ARHGEF2;
                     cd20877"
                     /db_xref="CDD:410427"
     misc_feature    664..1248
                     /gene="ARHGEF2"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(682..684,694..696,1015..1017,1099..1104,1111..1116,
                     1120..1125,1132..1137,1144..1149,1156..1158,1234..1236,
                     1246..1248)
                     /gene="ARHGEF2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1366..1713
                     /gene="ARHGEF2"
                     /note="Rho guanine nucleotide exchange factor 2 Pleckstrin
                     homology (PH) domain; Region: PH_ARHGEF2; cd13393"
                     /db_xref="CDD:275428"
     misc_feature    <2161..>2592
                     /gene="ARHGEF2"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
ORIGIN      
        1 gctgcccact ggggggagtc ccgggaaaaa gagaaaatga aggaagccaa ggacgcccgc
       61 tataccaacg ggcacctctt caccaccatc tccgtttcgg gcatgaccat gtgctatgcc
      121 tgtaacaaga gcatcacagc caaggaggcc ctcatctgcc caacctgcaa tgtgactatc
      181 cacaaccgct gtaaagacac cctcgccaac tgtaccaagg tcaagcagaa gcaacagaaa
      241 gctgccctgc tgaagaacaa cactgccttg cagtctgttt cacttcgcag taagaccacc
      301 actcgggagc gtcccagctc tgccatctac ccctccgaca gcttccgaca gtccctgctt
      361 ggctcccgcc gtggccgctc ctccttgtct ttagccaaaa gtgtttccac caccaacatt
      421 gctggacact tcaatgatga gtctcccctg gggctgcgcc ggatcctctc ccagtccaca
      481 gactccctca acatgcggaa ccggaccctg tcagtggagt ccctcatcga cgaaggtgca
      541 gaggtgatct acaatgagtt gatgagtgac tttgagatgg atgagaagga ctttgcagct
      601 gattcctgga gccttgctgt ggatagcaac tttttgcagc agcataaaaa ggaggtgatg
      661 aagcagcagg atgtcattta tgagctgatc cagacagagc tacaccatgt gcggaccctg
      721 aagatcatga cgcgcctctt ccgcacggga atgctggaag agctacagct ggagccagga
      781 gtggtccagg gcctgttccc ctgcgtggac gaactcagtg acatccatac acgcttcctc
      841 agccagctgt tagaacgccg acgccaggcc ctgtgccctg gcagcacccg gaacttcgtc
      901 atccatcgct tgggtgacct gctcatcagc cagttctcag gtcccagcgc agagcagatg
      961 cggaagacct actcggagtt ctgtagccgc cacaccaagg ccttaaagct ctataaggag
     1021 ctatatgccc gagacaaacg cttccagcag ttcatccgga aagtgacccg ctcggccgtg
     1081 ctgaagcggc atggtgtaca ggagtgcatc ctactggtga ctcagcgcat caccaagtac
     1141 ccggtgctca tcaaccggat cctgcagcat tcccacggga tcgaggagga gcgccaggac
     1201 ctgacgacgg cactggggct ggtgaaggag ctgctgtcca acgtagacca ggatgtgcac
     1261 gagctggaga aaggggcccg cctgcaggag atctacaacc gtatggaccc tcgggcccag
     1321 gccccggtgc ctggcaaggg cccttttggc cgagaggagc ttctgcggcg caagctcatc
     1381 cacgatggtt gcctgctctg gaagacagct actgggcgct tcaaagatgt gctcatgctg
     1441 ctgatgacag atgtgctggt atttctccag gagaaggacc agaagtacat ctttcctgcc
     1501 ctggacaagc cctcggtggt gtcactgcag aatctaatcg tgcgggacat cgccaaccag
     1561 gagaaaggga tgtttctgat cagcgcggca ccccctgaga tgtatgaggt ccacacggca
     1621 tcccgggatg accggagcac ctggatccgc gtcattcagc agagtgtgcg agtatgccca
     1681 tccagggagg acttccccct gattgagaca gaggatgagg cttacctgcg gcgtatcaag
     1741 atggagctgc agcagaaaga ccgggcactg gtggagctgc tgcaggagaa ggttgggctg
     1801 tttgctgaga tgacccactt ccaagtggaa gaggatggcg gcagcgggat gccgctgccc
     1861 accctgccca gggggctttt ccgctctgag tccctcgagt cccctcgtgg cgagcggctg
     1921 ctgcaggatg ccatccgtga ggtggagggc ctgaaagacc tgctggtggg gcctggagtg
     1981 gagctgctct tgacaccccg ggaaccaacc ctgtccatgg aaccggacag cggtggtaac
     2041 acaagtccag gagtcactgc caatggtgag gccagaacct tcaatggctc cattgagctc
     2101 tgcagagctg actcagactc cagccagaag gatcgaaatg gaaatcagct gagatctccc
     2161 caggaggaag cgttgcagcg attggtcaat ctctatggac ttctacatgg cctacaggcg
     2221 gctgtggccc agcaggacac tttgatggaa gcccggttcc ctgagggccc cgagcggcgg
     2281 gagaagctga cccgagccaa ctcccgggat ggggaggctg gcagagccgg cgctgcccct
     2341 gtggctcctg aaaagcaggc tacggaactg gcattgctgc agcggcaaca cacgctgctg
     2401 caagaggagc tacggcgctg ccgacgcctc ggcgaagagc gggcgacaga ggctggcagc
     2461 ctggaagccc ggctccgaga gagcgagcag gcccgcgccc tgctggagcg ggaggccgaa
     2521 gaggctcgca ggcagctggc cgccttgggc cacacggaac cactcccggc tgaggccccc
     2581 tgggcccggc ggcctctgga tccgaggcgg cgtagcctcc ctgcaggcga tgccctgtac
     2641 ttgagtttca cccccccaca gcccagccga ggccacgacc gcctagattt gcctgtgact
     2701 attcgctccg tccatcgacc ctttgaggat cgagagaggc aggagctggg cagccccgac
     2761 gagcggctgc aagatagcag tgaccccgac accggcagcg aggaggaagg tagcagccgt
     2821 ctgtctccgc cccatagtcc acgagacttc acccgaatgc aggacatccc ggaagagact
     2881 gagagccgtg acggggagcc tgtagcttca gagagctaag ggggcccctc cccccacccc
     2941 atgtccccct gaagaacatt actgagggag gcaaacctgg ggactccaat ctgccaatga
     3001 cgagggaaca tttgaaagaa ctgctgattg tccttgccag ctcttgggat ccttggacac
     3061 gggggcgggg ggggggcgcc atttaggaag ctgggggtat taggccacag tgccccctgg
     3121 tggcatccag aagctacact gcagatgcca atttttcatg cctttttccc tctactttag
     3181 gaaaatttat ttatttattg tttattagtt atggagggag aggggagatt tagaggacca
     3241 gggacatggg aaccaagcca tagggatcag ggggccttgt cctttaacac tactggggtt
     3301 tattcaggct taaccatgca gctgctgggt tctagccctg acacccctcc tgagcaacac
     3361 ccatctttga ggagaggctg cagccataag accctactgc cccttcagga agggctgtgg
     3421 tcagggccat gtccctctcc ccttcccctc aacctcttac tgctgttctc ccatctctct
     3481 gtcttcaatg gaaaccccag ggagataacc tggcttccta gagttgatgg aatacaggtt
     3541 gaggtggccg taaagggggc ttggggggtg aggggaaaaa ctcacaggga ccagaatgtt
     3601 tctttgttgt tgttgttttc tttttttgta ccaaagccaa ctgcacgtgt tttatatttt
     3661 taagagaaga ttgtaggcaa ttagaaatcg cagccttcta tctctgcatc tcagaagaac
     3721 ttgagggatg gggggaacaa tgacttctcc actcatctat agtactgggg gacccatttt
     3781 gacctcttcc ccagccgttt ggccaaacag ttcttgggtg agttgggaaa tctctacaaa
     3841 ccctgacctc atcccccacc tcagcaacca tgacccgaaa cctctgcgtg aatttggggg
     3901 atttttcaat ggacctcccc cggcccagtg cctgccagcc ccagccagtt ttctgcaaat
     3961 ttgattgtta aaaaaaaaaa aaagaagagg aaaaaaaaaa aaaagaaagg gaaaaagata
     4021 aaacagggaa aattaaagtc ctggaacccc aggaagtact gtctgttaat gtctgccagt
     4081 tctgagggtg ctggtgaggg ggagagccag gcaatgacgt gtgttcctcc aaaaggagcc
     4141 tcttcctctc ccaggaaggg tgactgcctc cctgaagaca gggggcgcta acaaaagaaa
     4201 ctgctgccca cctttttttt gctgtcatct ttgacgctca caaatacaag gataataatg
     4261 aagggacact taggttccag tggctgttgg aggttccaac attaaaaaac ttgttttcat
     4321 ctca
//
LOCUS       XM_032614537            2869 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus relaxin family peptide/INSL5 receptor 4
            (RXFP4), mRNA.
ACCESSION   XM_032614537
VERSION     XM_032614537.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 3 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1189              VOSU01000011.1     114324793-114325981
            1190-2869           VOSU01000011.1     114325983-114327662
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2869
                     /gene="RXFP4"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 7 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744579"
     CDS             788..1894
                     /gene="RXFP4"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 3 bases at 3 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:1067..1069,aa:OTHER)
                     /transl_except=(pos:1721..1723,aa:OTHER)
                     /transl_except=(pos:1751..1753,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: relaxin-3 receptor 2"
                     /protein_id="XP_032470428.1"
                     /db_xref="GeneID:116744579"
                     /translation="MPTPNTSVPPPAFWVNTSGGSVLSADEAMMPVGFLAPRVALAYG
                     LVGDIGLLGNLAGLWVLGNCARRAPCPSSDTFVFKLALADLGLALTLHFXAAESALDF
                     HWPFGGALCKMVLTATVLNIYTSIFFITVLSVARCWVVVMAAGPGTHLSLFWAHVATL
                     AVWVAAALVTVPTAVFGAKGEVTGMRLCLLCFPSRYQLGAYQLQRVVLAFMVPLGIIT
                     TSYLLLLAFLRRRQRQDSRVAARSVHILLASFLCWFPNHVVPLWGVLVKSDLVPWDST
                     FYTIHTYVFRITTCLAHSNSCLNPMLYCFLRREPLXALADTFRDLXARLWPQGRGWVE
                     QVALKEVGRRWMESTPWEGGPSTRLTNLDKGTPG"
     misc_feature    902..1729
                     /gene="RXFP4"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    902..976
                     /gene="RXFP4"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    1007..1072
                     /gene="RXFP4"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    1121..1189
                     /gene="RXFP4"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    1256..1306
                     /gene="RXFP4"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    1382..1453
                     /gene="RXFP4"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    1505..1570
                     /gene="RXFP4"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    1631..1708
                     /gene="RXFP4"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 ctgtgctccg caacgggaga agccacagta gtgagaggcc cgtgtactgc aaataataat
       61 aataataata ataatcactc atgcaaatag caatgtataa agtgcttttt catgtgttat
      121 ctcattttac cacaccaatc ccgtaaagca gagactttta cctgaaaaat ttaagctagg
      181 aaactgaggc tcaggggagt aaagtaattc acccatagtc acacagcgag tgaggagcag
      241 atctgggact ccagaacttc tgctctttct ctctcaaata cctattctga ttccctgcct
      301 ccatgctccc tcccaggccc cttccccttg gctccaaggg agcattttct gcagagaagg
      361 gggcccctga acactgttag gattagaggg ggctccagtt tggctcctgt cgtccctgag
      421 atggggtatc tgtggccctc tccctggagt ggaggcttgg ggctgccctg catagtggga
      481 tcattctccc tccccccatc ctcttctgca tagagctcta cacaaacaca aacacattta
      541 tcccaacgtt caggttctct ctcaccctgc cccacccacc accgagacca acagagaaga
      601 ggcaggttgt ccctccacca cccgccccct gaggtgtggg cgtgggctgg gcctccaggc
      661 agccagaggc cccgagagaa gcagagaagc gctcagatct acgccgtcct gctgagctcc
      721 ttaggtggtc cctgccagtc tggcaggcac ccctggcccc tctgcccagc accaccgatg
      781 tcctgcgatg cccacgccca acacctctgt gcccccgcct gctttctggg tcaacacctc
      841 tggaggcagt gtgctgagtg ctgatgaagc tatgatgcct gttggattcc tagccccgag
      901 ggttgccctg gcctatgggc tcgtggggga catcggcttg ctgggaaatt tggccggact
      961 ctgggttctg ggtaactgcg ctcggcgagc cccctgccca tcttctgaca cttttgtctt
     1021 taaactagct ttggcagacc tggggctggc actcactctc cacttctagg cagccgagtc
     1081 ggcactggac ttccactggc ccttcggagg tgccctctgc aaaatggtcc tgacagccac
     1141 cgtcctcaac atctacacca gcatcttctt catcacggtg ctgagtgttg cccgatgctg
     1201 ggtggtggtc atggctgcag gacccggcac ccacctctcg ctcttctggg cccatgtggc
     1261 caccctggct gtgtgggtgg cagctgccct ggtgacggtg cccacggctg tctttggggc
     1321 caagggcgag gtgactggca tgcgtctgtg cctgctgtgc ttccccagca ggtatcagct
     1381 aggggcctac cagctgcaga gggtggtcct ggcctttatg gttccactgg gcatcatcac
     1441 caccagctac ctgctgttgc tggccttcct gcggcggcgg caacggcagg acagcagagt
     1501 cgcagcccgc tctgtccaca tccttctggc ctccttcctc tgctggttcc ccaaccacgt
     1561 ggtccctctt tggggtgtcc tggtgaagtc tgacctggtg ccctgggaca gcactttcta
     1621 caccatccat acctatgtct tccgcatcac cacctgcctg gcacacagca acagctgcct
     1681 caaccccatg ctgtactgct tcctaaggcg ggagcccctg taggcactgg cagacacctt
     1741 cagggatctg tgagcaaggc tgtggcccca ggggcggggc tgggtagaac aggtggccct
     1801 aaaggaggtg ggcaggcggt ggatggagag caccccttgg gagggtggcc cttctaccag
     1861 gcttaccaac ctggacaaag ggacacctgg gtgaaggggg caaggtaaac cccctcttct
     1921 ttgcggggat ccacgcatcc tagggagaga gaggttggcc tctctgccac gatgcaaggc
     1981 cctcagggaa agtcttatct ttgatcccca gctctggcta tgggggaaca gggaggctgg
     2041 gacccaggtc agggctgggt acgaccaagt ggaagtctcc acatggagat gggaatgatg
     2101 agtatctgag aataaacctc tggagaatac acaaagtgtc tgtacctttc atctcagttc
     2161 cacctccagg tcaaggtggc caaaaggatt ctttgcccca tttctgcctt ctgtgagaat
     2221 tcccagaaaa atttccctaa gggttctaga ctaattgggt cataggtcaa tgcctatctc
     2281 cctctatccc ctccaccctc cctccctcac ctcaaatggg gtgtaccctt gtccttctct
     2341 ggtgcggggg ccaaatatgc ccttctcctc tggccacctc taccttctta ccatctcatt
     2401 agtgtctaca gaaacttggt gcccacagac acctcagcaa caaaagctgt agttctccct
     2461 gctgtgtgtg gggtcttgct ggatccctag ctccagccaa gcccggagtg caaacccgtt
     2521 tctggctggg agtacccgtg tgtctctcct taaatcagga tttggaggga gaagtgagga
     2581 taaggacaag ccaaggatgt gtgtggggca cagggaggca agagatgcgg aagggggctg
     2641 ggcgaagagg aggctgaatg tgcagctaga ggagtgcgaa ccacggaata tggtgctact
     2701 cttcctcctc ccccaagggc ttagctcaga gcatcgactc aggtgtcaga acacctggat
     2761 tcacatccta ggtctgacac taaccagctg agggacctcg gtaagttact ttacttctct
     2821 gtacctgttt tctcaattta aaatgggctg ttgggcttcc ctggtggca
//
LOCUS       XM_032614552            1105 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus signal sequence receptor subunit 2
            (SSR2), transcript variant X1, mRNA.
ACCESSION   XM_032614552
VERSION     XM_032614552.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1105
                     /gene="SSR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744583"
     CDS             68..637
                     /gene="SSR2"
                     /codon_start=1
                     /product="translocon-associated protein subunit beta
                     isoform X1"
                     /protein_id="XP_032470443.1"
                     /db_xref="GeneID:116744583"
                     /translation="MRLLAFLALALFAVTQAEEGARLLASKSLLNRYAVEGRDLTLQY
                     NIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPYPLDAGASNVSHTVVLR
                     PLKAGYFNFTSATITYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFG
                     VMTLPSIGIPLLLWYSSKRKYDTPKTKKN"
     misc_feature    107..622
                     /gene="SSR2"
                     /note="Translocon-associated protein beta (TRAPB); Region:
                     TRAP_beta; pfam05753"
                     /db_xref="CDD:399046"
ORIGIN      
        1 ccgatgctga cgctctcttc cggttttgct ggctcccccc gcccaaaagg ctttgagggt
       61 gcgcgcgatg aggctgctgg cattcctggc attggctcta tttgctgtca ctcaagcaga
      121 ggaaggagcc aggcttttgg cctccaaatc actgctgaac agatatgccg tggaggggcg
      181 agacctgacc ttacagtaca acatctacaa tgttggctca agtgctgcat tagatgtgga
      241 attatctgat gattccttcc ctccagaaga ctttggcatt gtctctggaa tgctcaacgt
      301 caaatgggac cgaattgctc catatcctct tgacgctggt gctagcaacg tttcccacac
      361 cgtggtcctg cgccctctca aggctggtta tttcaacttc acctcagcaa ctattactta
      421 tctggcccag gaggatgggc ccgttgtgat tggctttacc agtgcacccg gacagggagg
      481 aatcctggct cagagggagt ttgataggag attctccccc cattttctgg actgggcagc
      541 cttcggggtc atgactctcc cttccatcgg catccccctg ctgttgtggt attccagcaa
      601 gaggaaatat gacaccccca aaaccaagaa gaactgagtg gggcttccag tcctcccttc
      661 ccaaggaata caggtgcttt ccagactcca aagggtatct caaatgcaat ctcttctccc
      721 ttagcccttg gccacctcct tgatcctgcc ctgctctcaa ccagagcgaa ggaccagacc
      781 ttggagtctt tgagagcctc cttggttcca tcgtgaagcc atacaaacag gaaagccttt
      841 ggcaacctcc ttgagcctag gggccctgtg gtgcaccgcc gaggtgccgc agggtacatt
      901 gctggtgatg tgaactctct caggggtcca ggagggggca cttcggagac tgcctgacac
      961 caccccgtcc cccgccctcc cctctcagaa gagggtggaa gataagatga aagctatggg
     1021 actcttggag gcaacccagt ctctgtgctg gcttagggaa gctcttacca aatggggttt
     1081 tctaataaaa acaaatgcca ccctg
//
LOCUS       XM_032614561            1159 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus signal sequence receptor subunit 2
            (SSR2), transcript variant X2, mRNA.
ACCESSION   XM_032614561
VERSION     XM_032614561.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1159
                     /gene="SSR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744583"
     CDS             122..691
                     /gene="SSR2"
                     /codon_start=1
                     /product="translocon-associated protein subunit beta
                     isoform X1"
                     /protein_id="XP_032470452.1"
                     /db_xref="GeneID:116744583"
                     /translation="MRLLAFLALALFAVTQAEEGARLLASKSLLNRYAVEGRDLTLQY
                     NIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPYPLDAGASNVSHTVVLR
                     PLKAGYFNFTSATITYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFG
                     VMTLPSIGIPLLLWYSSKRKYDTPKTKKN"
     misc_feature    161..676
                     /gene="SSR2"
                     /note="Translocon-associated protein beta (TRAPB); Region:
                     TRAP_beta; pfam05753"
                     /db_xref="CDD:399046"
ORIGIN      
        1 cggttttgct ggctcccccc gcccaaaagg ctttgagggt gcgcgcggtg agttccgagg
       61 cactgggggt gccagcggga gcctgggagt ctcacgtctg cacaacattc agcggctgag
      121 tatgaggctg ctggcattcc tggcattggc tctatttgct gtcactcaag cagaggaagg
      181 agccaggctt ttggcctcca aatcactgct gaacagatat gccgtggagg ggcgagacct
      241 gaccttacag tacaacatct acaatgttgg ctcaagtgct gcattagatg tggaattatc
      301 tgatgattcc ttccctccag aagactttgg cattgtctct ggaatgctca acgtcaaatg
      361 ggaccgaatt gctccatatc ctcttgacgc tggtgctagc aacgtttccc acaccgtggt
      421 cctgcgccct ctcaaggctg gttatttcaa cttcacctca gcaactatta cttatctggc
      481 ccaggaggat gggcccgttg tgattggctt taccagtgca cccggacagg gaggaatcct
      541 ggctcagagg gagtttgata ggagattctc cccccatttt ctggactggg cagccttcgg
      601 ggtcatgact ctcccttcca tcggcatccc cctgctgttg tggtattcca gcaagaggaa
      661 atatgacacc cccaaaacca agaagaactg agtggggctt ccagtcctcc cttcccaagg
      721 aatacaggtg ctttccagac tccaaagggt atctcaaatg caatctcttc tcccttagcc
      781 cttggccacc tccttgatcc tgccctgctc tcaaccagag cgaaggacca gaccttggag
      841 tctttgagag cctccttggt tccatcgtga agccatacaa acaggaaagc ctttggcaac
      901 ctccttgagc ctaggggccc tgtggtgcac cgccgaggtg ccgcagggta cattgctggt
      961 gatgtgaact ctctcagggg tccaggaggg ggcacttcgg agactgcctg acaccacccc
     1021 gtcccccgcc ctcccctctc agaagagggt ggaagataag atgaaagcta tgggactctt
     1081 ggaggcaacc cagtctctgt gctggcttag ggaagctctt accaaatggg gttttctaat
     1141 aaaaacaaat gccaccctg
//
LOCUS       XM_032614572            1059 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus signal sequence receptor subunit 2
            (SSR2), transcript variant X3, mRNA.
ACCESSION   XM_032614572
VERSION     XM_032614572.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1059
                     /gene="SSR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744583"
     CDS             22..591
                     /gene="SSR2"
                     /codon_start=1
                     /product="translocon-associated protein subunit beta
                     isoform X1"
                     /protein_id="XP_032470463.1"
                     /db_xref="GeneID:116744583"
                     /translation="MRLLAFLALALFAVTQAEEGARLLASKSLLNRYAVEGRDLTLQY
                     NIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPYPLDAGASNVSHTVVLR
                     PLKAGYFNFTSATITYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFG
                     VMTLPSIGIPLLLWYSSKRKYDTPKTKKN"
     misc_feature    61..576
                     /gene="SSR2"
                     /note="Translocon-associated protein beta (TRAPB); Region:
                     TRAP_beta; pfam05753"
                     /db_xref="CDD:399046"
ORIGIN      
        1 gaaagctaga ggctgttgca gatgaggctg ctggcattcc tggcattggc tctatttgct
       61 gtcactcaag cagaggaagg agccaggctt ttggcctcca aatcactgct gaacagatat
      121 gccgtggagg ggcgagacct gaccttacag tacaacatct acaatgttgg ctcaagtgct
      181 gcattagatg tggaattatc tgatgattcc ttccctccag aagactttgg cattgtctct
      241 ggaatgctca acgtcaaatg ggaccgaatt gctccatatc ctcttgacgc tggtgctagc
      301 aacgtttccc acaccgtggt cctgcgccct ctcaaggctg gttatttcaa cttcacctca
      361 gcaactatta cttatctggc ccaggaggat gggcccgttg tgattggctt taccagtgca
      421 cccggacagg gaggaatcct ggctcagagg gagtttgata ggagattctc cccccatttt
      481 ctggactggg cagccttcgg ggtcatgact ctcccttcca tcggcatccc cctgctgttg
      541 tggtattcca gcaagaggaa atatgacacc cccaaaacca agaagaactg agtggggctt
      601 ccagtcctcc cttcccaagg aatacaggtg ctttccagac tccaaagggt atctcaaatg
      661 caatctcttc tcccttagcc cttggccacc tccttgatcc tgccctgctc tcaaccagag
      721 cgaaggacca gaccttggag tctttgagag cctccttggt tccatcgtga agccatacaa
      781 acaggaaagc ctttggcaac ctccttgagc ctaggggccc tgtggtgcac cgccgaggtg
      841 ccgcagggta cattgctggt gatgtgaact ctctcagggg tccaggaggg ggcacttcgg
      901 agactgcctg acaccacccc gtcccccgcc ctcccctctc agaagagggt ggaagataag
      961 atgaaagcta tgggactctt ggaggcaacc cagtctctgt gctggcttag ggaagctctt
     1021 accaaatggg gttttctaat aaaaacaaat gccaccctg
//
LOCUS       XM_032614581            1087 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus signal sequence receptor subunit 2
            (SSR2), transcript variant X4, mRNA.
ACCESSION   XM_032614581
VERSION     XM_032614581.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1087
                     /gene="SSR2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744583"
     CDS             68..619
                     /gene="SSR2"
                     /codon_start=1
                     /product="translocon-associated protein subunit beta
                     isoform X2"
                     /protein_id="XP_032470472.1"
                     /db_xref="GeneID:116744583"
                     /translation="MRLLAFLALALFAVTQAEEGARLLASKSLLNRYAVEGRDLTLQY
                     NIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGY
                     FNFTSATITYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPS
                     IGIPLLLWYSSKRKYDTPKTKKN"
     misc_feature    107..604
                     /gene="SSR2"
                     /note="Translocon-associated protein beta (TRAPB); Region:
                     TRAP_beta; pfam05753"
                     /db_xref="CDD:399046"
ORIGIN      
        1 ccgatgctga cgctctcttc cggttttgct ggctcccccc gcccaaaagg ctttgagggt
       61 gcgcgcgatg aggctgctgg cattcctggc attggctcta tttgctgtca ctcaagcaga
      121 ggaaggagcc aggcttttgg cctccaaatc actgctgaac agatatgccg tggaggggcg
      181 agacctgacc ttacagtaca acatctacaa tgttggctca agtgctgcat tagatgtgga
      241 attatctgat gattccttcc ctccagaaga ctttggcatt gtctctggaa tgctcaacgt
      301 caaatgggac cgaattgctc ctgctagcaa cgtttcccac accgtggtcc tgcgccctct
      361 caaggctggt tatttcaact tcacctcagc aactattact tatctggccc aggaggatgg
      421 gcccgttgtg attggcttta ccagtgcacc cggacaggga ggaatcctgg ctcagaggga
      481 gtttgatagg agattctccc cccattttct ggactgggca gccttcgggg tcatgactct
      541 cccttccatc ggcatccccc tgctgttgtg gtattccagc aagaggaaat atgacacccc
      601 caaaaccaag aagaactgag tggggcttcc agtcctccct tcccaaggaa tacaggtgct
      661 ttccagactc caaagggtat ctcaaatgca atctcttctc ccttagccct tggccacctc
      721 cttgatcctg ccctgctctc aaccagagcg aaggaccaga ccttggagtc tttgagagcc
      781 tccttggttc catcgtgaag ccatacaaac aggaaagcct ttggcaacct ccttgagcct
      841 aggggccctg tggtgcaccg ccgaggtgcc gcagggtaca ttgctggtga tgtgaactct
      901 ctcaggggtc caggaggggg cacttcggag actgcctgac accaccccgt cccccgccct
      961 cccctctcag aagagggtgg aagataagat gaaagctatg ggactcttgg aggcaaccca
     1021 gtctctgtgc tggcttaggg aagctcttac caaatggggt tttctaataa aaacaaatgc
     1081 caccctg
//
LOCUS       XM_032614595            1853 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 45
            (CFAP45), transcript variant X1, mRNA.
ACCESSION   XM_032614595
VERSION     XM_032614595.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1853
                     /gene="CFAP45"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744594"
     CDS             81..1730
                     /gene="CFAP45"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 45
                     isoform X1"
                     /protein_id="XP_032470486.1"
                     /db_xref="GeneID:116744594"
                     /translation="MPLSTAGVLSSSSTTSNRLRNRPCYRTKALNSEVDESLFRAIKP
                     LTQSDSPIVLLRDKHAIRKTLTALALDHKPETVQLITRDMVRELIIPTKDPSGESLIM
                     SPEEFERIKWASHVLTREELKAREQAFKEEKEAIVDAVTTRKKIMKQKEMVWRTSKKL
                     NNLEEVAKDRAQNLLQRARQLRMEQVEELKDMSKIILNAKCHAIRDAQILEKQLIQKE
                     LDAEEKRLDQMMEVERQKSVQRQEELHRKRREESIRGRRHIVEQMEKKQEERSLLAEQ
                     QQQDKEQIRAYMEQLQEEDLRDLERRHQQKLKMQAEIKRINDENQRQKAELLAQEKLA
                     DQMVMEFTKKKMAREAEFEAEQERIRREKEKEIARLRAMQEKAQDYQAEQDALRAKRN
                     QEVADREWRRKEKENAQKKMETEAKLRKSRQEQVAFKEHALAVQVQRDRDEFERILRA
                     QREQIEKQQLEEEKKAMGRLQYANELQRQVRENQQKQLQDRIATFEEGRRLKEEAQKW
                     RERIEGIKKKKIEELRATGLPEKYCTEAERKANILPDTSVD"
     misc_feature    624..1646
                     /gene="CFAP45"
                     /note="Trichohyalin-plectin-homology domain; Region: TPH;
                     pfam13868"
                     /db_xref="CDD:464007"
ORIGIN      
        1 gtaacgcgtc aacacctagc gtcagtggtg cagtaggtgg cggaggcggt ggaggcgcgg
       61 agttagagag tgcggctgag atgcccttaa gcacagccgg cgtcctgagc tcctcctcta
      121 ccacttccaa caggttaagg aataggcctt gctatcggac caaagccctg aactccgagg
      181 tggatgagag cctcttcaga gctatcaagc ctctgaccca gagcgacagc cccatcgtgc
      241 tgctccgaga taagcatgcc attcggaaaa ctctcactgc cctggccttg gaccacaagc
      301 cagagaccgt ccagctcatc acccgggaca tggtccggga gctcatcatc cccaccaagg
      361 acccctccgg ggagtccctt atcatgagcc ctgaggagtt tgagcggatc aaatgggcat
      421 cccacgtcct gactagagaa gaactcaagg ccagggagca ggccttcaag gaggagaagg
      481 aagccattgt ggacgcagtg accacacgca agaagatcat gaaacagaag gaaatggttt
      541 ggaggaccag caagaagctc aacaatctgg aggaggtggc caaggacagg gcccagaacc
      601 tccttcagag agccaggcag ctgcggatgg agcaggtaga ggagctgaag gacatgagca
      661 agatcatcct caatgccaag tgccatgcca tccgggatgc ccaaattctg gagaagcagc
      721 tgatccaaaa agagctggat gcagaggaga aacggttgga tcagatgatg gaggtggagc
      781 ggcagaaatc cgttcagagg caggaggagc tgcacagaaa gaggcgggaa gagagcatcc
      841 gaggaagacg gcacattgtg gaacagatgg aaaagaagca ggaggagcga tcgctgcttg
      901 ccgagcagca gcaacaggat aaggagcaga ttcgggcgta tatggagcag ctccaagagg
      961 aggatctaag ggacttggaa cgaagacacc agcaaaagct gaagatgcag gctgagatca
     1021 aacgcatcaa tgacgaaaac cagaggcaga aagcagagct gctggctcag gagaagctgg
     1081 cagaccagat ggtgatggaa tttaccaaga agaagatggc tcgagaagca gagtttgagg
     1141 ctgagcagga gagaatccgg agggagaaag agaaggagat cgcccgcctg agggcaatgc
     1201 aggagaaggc ccaggattac caggcagagc aggatgcctt gcgggccaaa cgcaaccagg
     1261 aggttgccga cagagagtgg cgcagaaagg aaaaggaaaa cgcacagaag aagatggaaa
     1321 ctgaggccaa actgcggaaa agtcggcaag aacaggtggc tttcaaggag cacgctctgg
     1381 ccgttcaggt gcaacgggac cgggatgagt tcgagaggat tcttcgggct cagagagagc
     1441 agattgaaaa gcagcagctg gaggaggaga aaaaggccat ggggcgctta cagtatgcca
     1501 atgagctcca gcgccaggtg cgggagaacc agcagaagca gttgcaggac cggatcgcca
     1561 ccttcgagga gggccggcgc ctcaaagagg aggcccagaa gtggcgtgag cgcattgaag
     1621 gcatcaagaa gaaaaagata gaggagctga gagccaccgg ccttcctgag aagtactgca
     1681 ctgaagctga gcgcaaagct aacatcctac ccgacacctc tgtggactga gggtgcctct
     1741 ctgcccctcg ggatgccttc agagggcagc ttcctcccag gctctcggtg tccataactg
     1801 cagctaatct agacacttct gagctacaga ttaaatctat tctacttctc taa
//
LOCUS       XM_032614603            1801 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 45
            (CFAP45), transcript variant X2, mRNA.
ACCESSION   XM_032614603
VERSION     XM_032614603.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1801
                     /gene="CFAP45"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116744594"
     CDS             46..1581
                     /gene="CFAP45"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 45
                     isoform X2"
                     /protein_id="XP_032470494.1"
                     /db_xref="GeneID:116744594"
                     /translation="MPLSTAGVLSSSSTTSNRLRNRPCYRTKALNSEVDESLFRAIKP
                     LTQSDSPIVLLRDKHAIRKTLTALALDHKPETVQLITRDMVRELIIPTKDPSGESLIM
                     SPEEFERIKWASHVLTREELKAREQAFKEEKEAIVDAVTTRKKIMKQKEMVWRTSKKL
                     NNLEEVAKDRAQNLLQRARQLRMEQVEELKDMSKIILNAKCHAIRDAQILEKQLIQKE
                     LDAEEKRLDQMMEVERQKSVQRQEELHRKRREESIRGRRHIVEQMEKKQEERSLLAEQ
                     QQQDKEQIRAYMEQLQEEDLRDLERRHQQKLKMQAEIKRINDENQRQKAELLAQEKLA
                     DQMVMEFTKKKMDALRAKRNQEVADREWRRKEKENAQKKMETEAKLRKSRQEQVAFKE
                     HALAVQVQRDRDEFERILRAQREQIEKQQLEEEKKAMGRLQYANELQRQVRENQQKQL
                     QDRIATFEEGRRLKEEAQKWRERIEGIKKKKIEELRATGLPEKYCTEAERKANILPDT
                     SVD"
     misc_feature    589..1497
                     /gene="CFAP45"
                     /note="Trichohyalin-plectin-homology domain; Region: TPH;
                     pfam13868"
                     /db_xref="CDD:464007"
ORIGIN      
        1 ggtggcggag gcggtggagg cgcggagtta gagagtgcgg ctgagatgcc cttaagcaca
       61 gccggcgtcc tgagctcctc ctctaccact tccaacaggt taaggaatag gccttgctat
      121 cggaccaaag ccctgaactc cgaggtggat gagagcctct tcagagctat caagcctctg
      181 acccagagcg acagccccat cgtgctgctc cgagataagc atgccattcg gaaaactctc
      241 actgccctgg ccttggacca caagccagag accgtccagc tcatcacccg ggacatggtc
      301 cgggagctca tcatccccac caaggacccc tccggggagt cccttatcat gagccctgag
      361 gagtttgagc ggatcaaatg ggcatcccac gtcctgacta gagaagaact caaggccagg
      421 gagcaggcct tcaaggagga gaaggaagcc attgtggacg cagtgaccac acgcaagaag
      481 atcatgaaac agaaggaaat ggtttggagg accagcaaga agctcaacaa tctggaggag
      541 gtggccaagg acagggccca gaacctcctt cagagagcca ggcagctgcg gatggagcag
      601 gtagaggagc tgaaggacat gagcaagatc atcctcaatg ccaagtgcca tgccatccgg
      661 gatgcccaaa ttctggagaa gcagctgatc caaaaagagc tggatgcaga ggagaaacgg
      721 ttggatcaga tgatggaggt ggagcggcag aaatccgttc agaggcagga ggagctgcac
      781 agaaagaggc gggaagagag catccgagga agacggcaca ttgtggaaca gatggaaaag
      841 aagcaggagg agcgatcgct gcttgccgag cagcagcaac aggataagga gcagattcgg
      901 gcgtatatgg agcagctcca agaggaggat ctaagggact tggaacgaag acaccagcaa
      961 aagctgaaga tgcaggctga gatcaaacgc atcaatgacg aaaaccagag gcagaaagca
     1021 gagctgctgg ctcaggagaa gctggcagac cagatggtga tggaatttac caagaagaag
     1081 atggatgcct tgcgggccaa acgcaaccag gaggttgccg acagagagtg gcgcagaaag
     1141 gaaaaggaaa acgcacagaa gaagatggaa actgaggcca aactgcggaa aagtcggcaa
     1201 gaacaggtgg ctttcaagga gcacgctctg gccgttcagg tgcaacggga ccgggatgag
     1261 ttcgagagga ttcttcgggc tcagagagag cagattgaaa agcagcagct ggaggaggag
     1321 aaaaaggcca tggggcgctt acagtatgcc aatgagctcc agcgccaggt gcgggagaac
     1381 cagcagaagc agttgcagga ccggatcgcc accttcgagg agggccggcg cctcaaagag
     1441 gaggcccaga agtggcgtga gcgcattgaa ggcatcaaga agaaaaagat agaggagctg
     1501 agagccaccg gccttcctga gaagtactgc actgaagctg agcgcaaagc taacatccta
     1561 cccgacacct ctgtggactg agggtgcctc tctgcccctc gggatgcctt cagagggcag
     1621 cttcctccca ggctctcggt gtccataact gcagctaatc tagacacttc tgagctacag
     1681 attaaatcta ttctacttct ctaaggaaca gtccagcttt cttgctgcgg ggatgtggct
     1741 gccacgggca ctgaacgagg agcaaaatag gtcatgggag ccccaggttg tgggccgtaa
     1801 g
//
LOCUS       XM_032614613            1861 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 45
            (CFAP45), transcript variant X3, mRNA.
ACCESSION   XM_032614613
VERSION     XM_032614613.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1861
                     /gene="CFAP45"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744594"
     CDS             241..1641
                     /gene="CFAP45"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 45
                     isoform X3"
                     /protein_id="XP_032470504.1"
                     /db_xref="GeneID:116744594"
                     /translation="MVRELIIPTKDPSGESLIMSPEEFERIKWASHVLTREELKAREQ
                     AFKEEKEAIVDAVTTRKKIMKQKEMVWRTSKKLNNLEEVAKDRAQNLLQRARQLRMEQ
                     VEELKDMSKIILNAKCHAIRDAQILEKQLIQKELDAEEKRLDQMMEVERQKSVQRQEE
                     LHRKRREESIRGRRHIVEQMEKKQEERSLLAEQQQQDKEQIRAYMEQLQEEDLRDLER
                     RHQQKLKMQAEIKRINDENQRQKAELLAQEKLADQMVMEFTKKKMAREAEFEAEQERI
                     RREKEKEIARLRAMQEKAQDYQAEQDALRAKRNQEVADREWRRKEKENAQKKMETEAK
                     LRKSRQEQVAFKEHALAVQVQRDRDEFERILRAQREQIEKQQLEEEKKAMGRLQYANE
                     LQRQVRENQQKQLQDRIATFEEGRRLKEEAQKWRERIEGIKKKKIEELRATGLPEKYC
                     TEAERKANILPDTSVD"
     misc_feature    535..1557
                     /gene="CFAP45"
                     /note="Trichohyalin-plectin-homology domain; Region: TPH;
                     pfam13868"
                     /db_xref="CDD:464007"
ORIGIN      
        1 gcggaggcgg tggaggcgcg gagttagaga gtgcggctga gatggttaag gaataggcct
       61 tgctatcgga ccaaagccct gaactccgag gtggatgaga gcctcttcag agctatcaag
      121 cctctgaccc agagcgacag ccccatcgtg ctgctccgag ataagcatgc cattcggaaa
      181 actctcactg ccctggcctt ggaccacaag ccagagaccg tccagctcat cacccgggac
      241 atggtccggg agctcatcat ccccaccaag gacccctccg gggagtccct tatcatgagc
      301 cctgaggagt ttgagcggat caaatgggca tcccacgtcc tgactagaga agaactcaag
      361 gccagggagc aggccttcaa ggaggagaag gaagccattg tggacgcagt gaccacacgc
      421 aagaagatca tgaaacagaa ggaaatggtt tggaggacca gcaagaagct caacaatctg
      481 gaggaggtgg ccaaggacag ggcccagaac ctccttcaga gagccaggca gctgcggatg
      541 gagcaggtag aggagctgaa ggacatgagc aagatcatcc tcaatgccaa gtgccatgcc
      601 atccgggatg cccaaattct ggagaagcag ctgatccaaa aagagctgga tgcagaggag
      661 aaacggttgg atcagatgat ggaggtggag cggcagaaat ccgttcagag gcaggaggag
      721 ctgcacagaa agaggcggga agagagcatc cgaggaagac ggcacattgt ggaacagatg
      781 gaaaagaagc aggaggagcg atcgctgctt gccgagcagc agcaacagga taaggagcag
      841 attcgggcgt atatggagca gctccaagag gaggatctaa gggacttgga acgaagacac
      901 cagcaaaagc tgaagatgca ggctgagatc aaacgcatca atgacgaaaa ccagaggcag
      961 aaagcagagc tgctggctca ggagaagctg gcagaccaga tggtgatgga atttaccaag
     1021 aagaagatgg ctcgagaagc agagtttgag gctgagcagg agagaatccg gagggagaaa
     1081 gagaaggaga tcgcccgcct gagggcaatg caggagaagg cccaggatta ccaggcagag
     1141 caggatgcct tgcgggccaa acgcaaccag gaggttgccg acagagagtg gcgcagaaag
     1201 gaaaaggaaa acgcacagaa gaagatggaa actgaggcca aactgcggaa aagtcggcaa
     1261 gaacaggtgg ctttcaagga gcacgctctg gccgttcagg tgcaacggga ccgggatgag
     1321 ttcgagagga ttcttcgggc tcagagagag cagattgaaa agcagcagct ggaggaggag
     1381 aaaaaggcca tggggcgctt acagtatgcc aatgagctcc agcgccaggt gcgggagaac
     1441 cagcagaagc agttgcagga ccggatcgcc accttcgagg agggccggcg cctcaaagag
     1501 gaggcccaga agtggcgtga gcgcattgaa ggcatcaaga agaaaaagat agaggagctg
     1561 agagccaccg gccttcctga gaagtactgc actgaagctg agcgcaaagc taacatccta
     1621 cccgacacct ctgtggactg agggtgcctc tctgcccctc gggatgcctt cagagggcag
     1681 cttcctccca ggctctcggt gtccataact gcagctaatc tagacacttc tgagctacag
     1741 attaaatcta ttctacttct ctaaggaaca gtccagcttt cttgctgcgg ggatgtggct
     1801 gccacgggca ctgaacgagg agcaaaatag gtcatgggag ccccaggttg tgggccgtaa
     1861 g
//
LOCUS       XM_032614625            2766 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prostaglandin F receptor (PTGFR), mRNA.
ACCESSION   XM_032614625
VERSION     XM_032614625.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2766
                     /gene="PTGFR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 mRNAs, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744605"
     CDS             137..1225
                     /gene="PTGFR"
                     /codon_start=1
                     /product="prostaglandin F2-alpha receptor"
                     /protein_id="XP_032470516.1"
                     /db_xref="GeneID:116744605"
                     /translation="MSTNNSKQPVSPAAGLLSNTTCQMEEELSISFSITFMTVGILSN
                     SLAIAILMKAYQRFRQKYKSSFLLLASALVITDFFGHLINGAIAVFVYASDKDWIHFD
                     KSNVLCSIFGICMVFSGLCPLFLGSVMAIERCIGVTQPIFHSTKITSKHVKMMLSGVC
                     FFAVFVALLPILGHRDYKIQASKTWCFYKTDHIKDWEDRFYLLLFSFLGLLALGISFF
                     CNAVTGISLLRVKFKSQQHRQGRSHHFEMVIQLLGIMCVSCVCWSPFLVTMASIGMNR
                     QDFMGACERTLFTLRMATWNQILDPWVYILLRKAVLKSLYTFTRRCCGVHIISLHVWE
                     LSSIKNSLKVAAISESPVTEKVTQQTST"
     misc_feature    215..1084
                     /gene="PTGFR"
                     /note="prostaglandin F2-alpha receptor, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; Region: 7tmA_FP; cd15145"
                     /db_xref="CDD:320273"
     misc_feature    218..298
                     /gene="PTGFR"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320273"
     misc_feature    332..412
                     /gene="PTGFR"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320273"
     misc_feature    order(398..400,407..412,458..475,479..484,491..493,
                     626..628,632..646,725..727,734..742,746..754,758..763,
                     920..922,929..934,938..943,950..952,980..985,989..997,
                     1004..1006,1013..1018)
                     /gene="PTGFR"
                     /note="putative ligand binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:320273"
     misc_feature    458..550
                     /gene="PTGFR"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320273"
     misc_feature    584..652
                     /gene="PTGFR"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320273"
     misc_feature    725..814
                     /gene="PTGFR"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320273"
     misc_feature    860..952
                     /gene="PTGFR"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320273"
     misc_feature    983..1060
                     /gene="PTGFR"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320273"
ORIGIN      
        1 ggcccacgga cccgcgcgct ctactgctcc acctagagcc ctgcccgcgg cccgggatgc
       61 caagatctct ggaccgcaag cctgcactgt tttgagaggg agatgacttg agtggccagc
      121 tcttatctcc acaacaatgt ccacgaacaa ttctaaacag ccagtgtccc ctgcagccgg
      181 gctcctttca aatacaactt gccaaatgga agaagagctt tcaatatctt tttcgataac
      241 cttcatgaca gtgggaatct tatcaaacag ccttgctatt gctattctca tgaaggcata
      301 ccagagattt agacagaagt acaagtcatc gtttttgctt ttagctagtg ctctggtaat
      361 cacagatttc tttgggcacc tcatcaatgg agctatagca gtctttgtat atgcttctga
      421 taaagactgg atccattttg acaaatcaaa cgtcctttgc agtatttttg gtatctgcat
      481 ggtattctct ggtctgtgcc cactttttct aggcagtgtg atggccattg agcgatgtat
      541 tggagtcacc caaccaatat ttcactctac gaaaattaca tccaaacatg ttaaaatgat
      601 gttgagtgga gtgtgctttt ttgctgtttt cgtagctttg ctgcccatcc ttgggcatcg
      661 tgactataaa attcaagcgt cgaagacctg gtgtttctac aaaacagatc acatcaaaga
      721 ctgggaagat aggttttatc ttttactttt ttcatttctg gggctcctag cccttggtat
      781 ttcatttttt tgcaatgccg tcacaggaat ttcactttta agagttaaat ttaaaagtca
      841 gcagcacaga caaggcaggt ctcatcattt tgaaatggtc atccagctcc tgggtataat
      901 gtgtgtctcc tgcgtttgct ggagtccgtt tctggtgaca atggccagca ttggaatgaa
      961 taggcaagat tttatgggtg cctgtgaaag aacccttttt actcttcgaa tggcaacatg
     1021 gaatcaaatc ttagatccct gggtgtatat tcttctacgg aaagctgtcc ttaagagtct
     1081 ctacacattt accagacgct gttgtggagt acatatcatc agcttacatg tttgggagct
     1141 tagctccatt aaaaattcct taaaggttgc tgctatttct gagtcaccag ttacagagaa
     1201 agtgactcag caaacaagca cctagttcag taggatggta aatcagtgta ggtctaggac
     1261 caaattaagg aaagttttgg caatatttca gttaatgtat gaatatagaa agcctaactg
     1321 gaaaaatcaa ccctcagcca gatagtttgg ggggcacttt tgtcagattt ggcttttgaa
     1381 atttgttaaa ttaactgtat agttgtgcat tttcacatgt ttttgtcaac tggaggtaaa
     1441 catgatgaac taatgccaca ggagtcaaat tgaaaacaat tttgggctta tctgtgttat
     1501 tgatgctttt ggaacaagta actctcttga aggctgtagc atttacttgg cctactacct
     1561 gtgcagtgaa atggcgattt gggggtgtca ctgctctata acagttcctt atagactagg
     1621 cacagtgaag cggagcgccc tcttttgatc tggtctgttt taccccagat tatgtagcct
     1681 caattagtgt gttgtcatgt cacagtggat tcgttgtggc tttttataat gacttccacg
     1741 tacgtgacgt gtggctgtca gtttgcctga tcttgggagc ctgtttagaa tgagcctatc
     1801 cttgttatat ttgacagata tgactgcttg catttattat tatggaggtc aaatgttgtt
     1861 tgaagatatt cttgttaagt catagttttc aagtaatcac catttcctct gaaaattcta
     1921 gtgtatagtc aatacttttt agagaaacaa aggctctgtg agcacgtata taggtgacat
     1981 gcattatagc agttcctaag aagctctgcc atggataatg caaaccagta gaacttaaac
     2041 cccaagtgat gggtgcaaag aacattggca aatgctcttt acctttagag tcattgacac
     2101 agtgtcattt ctatgtcagg gaacaaaaga aacacaacct ctagagaata atattcaaag
     2161 accatctgca gctagtgtgg ttctttccac ttacacacac acacaataca cacacacaca
     2221 cactctcaca aacacacaaa gaacatcaga aatttcagtt gaagagggct ccttaaatct
     2281 gtaatgtggc atcttctaaa gcctgtgcta ccagtgccaa ggagagggtt ggcaattaac
     2341 aggcattttg agacccttat aatggctaac caagagatca agggttgaaa tctttcccca
     2401 aatttctcag tgatatttaa actttatttt tgcttgtttg tataacttaa cccaaagaat
     2461 tttagtaatc attcaaaatg tcgtgggtct atcacagcat agggtagcta gttctgcttt
     2521 ataataggga aatgcatttc tgtagaaaga gtcccttcat taactggggt ctgttttaaa
     2581 attaatcttc cccatgagac tgattttaga ttctctagga aatctgtgca gttcaattag
     2641 acttaaatta ttcttttcac aaatttttgc ttttgaatgg taatttacat tggaagttat
     2701 tgttaacttt ggtcaaggtt ggtaaattct aattaataca ttaaaagaaa ctggggcttc
     2761 cctggt
//
LOCUS       XM_032614638            4321 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BMP/retinoic acid inducible neural
            specific 2 (BRINP2), mRNA.
ACCESSION   XM_032614638
VERSION     XM_032614638.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4321
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4321
                     /gene="BRINP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 19 Proteins, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744614"
     CDS             879..3233
                     /gene="BRINP2"
                     /codon_start=1
                     /product="BMP/retinoic acid-inducible neural-specific
                     protein 2"
                     /protein_id="XP_032470529.1"
                     /db_xref="GeneID:116744614"
                     /translation="MRWQCGTRFRGLRPVAAAPWAALLALALPGWVLAVSATAAAAVP
                     EHHASAAGQPPLDWLLTDRGPFHRTQEYTDFVERYRQGFTTRYRIYREFARWKVNSLA
                     LERKDFFSLPLPLAPEFIRNIRLLGRRPNLQQVTENLIKKYGTHFLLSATLGGEESLT
                     IFVDKRKLSRKSEVAGIAPIVGGGGNSSAVSLEILHQLAASYFIDRESTLRRLHHIQI
                     ATGAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKVQLLGLQVLLPEYLRERFVTA
                     ALSYITCSSEGELICKENDCWCKCSPTFPECNCPDADIQAMEDSLLQIQDSWATHSQQ
                     FEESEEFQALLKRLPDDRFLNSTAISQFWAMDTSLQHRYQQLGASLKVLFKKTHRIVR
                     RLFNLCKRCHRQPRFRLPKERSLSYWWNRIQSFLYCGESTFPGTFLEQSHSCTCPYDQ
                     SSCQGPIPCALGEGPACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAESLENFLGLET
                     DLQDLELKYLLQKWDSRIEVHSIFISNDMRLGSWFDPSWRKRMLLTLKSNKYKPGLVH
                     VMLALSLQICLTKNSTLEPVMAIYVNPFGGSHSESWFMPVNEGNFPDWERTNVDAAAQ
                     CQNWTITLGNRWKTFFETVHVYLRSRIKSLDDSSNETIYYEPLEMTDPSKNLGYMKIN
                     TLQVFGYSLPFDPDAIRDLILQLDYPYTQGSQDSALLQLIELRDRVNQLSPPGKVRLD
                     LFSCLLRHRLKLANNEVGRIQSSLRAFNSKLPNPVEYETGKLCS"
     misc_feature    1149..1724
                     /gene="BRINP2"
                     /note="membrane-attack complex / perforin; Region: MACPF;
                     smart00457"
                     /db_xref="CDD:214671"
     misc_feature    1887..3230
                     /gene="BRINP2"
                     /note="BMP/retinoic acid-inducible neural-specific
                     protein; Region: BRINP; pfam19052"
                     /db_xref="CDD:465961"
ORIGIN      
        1 gagtctgcag gtgaaactgc ctaggtacgg agctcggagt cggagcagag acacgccggg
       61 ctgcagcctg ggatggaatc cgctcgcctc ggaagctgct ctgcccgcgg ctgctcgggc
      121 agcccgtttg ctgagctcgg aggatcccgc tagcacttgc ccagggatgt gcgcctgccg
      181 tgcgcggcga gcgcctgggc aggtctgcag gcatacgagg gagcggtgaa gcaggaggaa
      241 ctgtctctac ccatgtgcaa ggcagtgatt ccgggagaga gacagggtga gtgagtctct
      301 ttagagttgg aaggaaggca cgatcttggt tttctcttcg gaggagggac agaggattcc
      361 ccgggtcggg tttggtactt tccttccctc tccacccgcg tgcgccccgg cccagcgtcg
      421 aagccccact tcaaacatgc tgtgggtgcc gggcatcctt gctgctccgc tggaaggcag
      481 caggcaagtg gtctgacggc ggcggcggtg gcggcggcgg cggcggcggc ggcggcggcg
      541 gcggcagcag cagcagcagc agcaaagcgg gtagcaagaa atttgaaaag agacatcggc
      601 tccctttcac acgctgaggg ggaggcattc acgtttcccc aaatgagaag gagccacgag
      661 aaatcatgaa gtaaaaactt tggaaagctg ccactggaga tgttgcacaa aatcctggaa
      721 tctttcagga gtctcctccc aatcggtgga ggtttgggga gcagctgata cagcaaggag
      781 ggctcttgca aggattcaag ttccaggagc cctggtggag cggcacagag cgggagagtg
      841 tggcgagaga atgaagacac caaccgcctg ggagaagcat gaggtggcag tgcggcactc
      901 gatttagagg gcttcggccg gtggcggcgg ccccatgggc agctctgctg gcactggccc
      961 tccccggttg ggtgctggct gtctcggcca cggcggccgc tgcggtcccc gagcatcatg
     1021 cctccgcggc cggccagccg cccctggact ggctgctcac agatcggggc ccatttcacc
     1081 gcacgcagga gtacaccgac ttcgtggagc gctaccgcca gggttttacc accagataca
     1141 ggatctacag ggagtttgca cgttggaaag tgaacagcct ggctctagaa aggaaggact
     1201 tctttagttt gccattgcct cttgccccag agtttatccg gaacatccgc ctcctcggaa
     1261 ggagacccaa cctgcaacag gtcaccgaaa acctgatcaa aaagtacggc actcacttct
     1321 tactttctgc cacccttgga ggagaagagt ccctgaccat ttttgtggac aagcggaaac
     1381 tgagccgaaa gtcagaggtg gcaggaattg cccctatagt cgggggcggt gggaacagct
     1441 ctgctgtgtc cctggagatc ctgcaccagc tggcagcctc ctacttcatc gacagagaga
     1501 gcaccctgcg acggctgcac catatccaga tagccacagg ggccatcaag gtcacggaga
     1561 ccaggaccgg tcccctgggc tgcagcaact acgacaacct ggactcggtc agctctgtcc
     1621 tggtacagag tccggagaac aaagtgcagt tactcggcct gcaggtgcta ctgcccgagt
     1681 acctgcggga gcgcttcgtg accgctgcgc tcagctacat cacgtgcagc tctgagggcg
     1741 agctcatctg caaggagaat gactgttggt gcaagtgcag ccccaccttc ccagaatgca
     1801 actgtcctga cgctgacatc caggccatgg aggacagcct gctgcagatc caggactcct
     1861 gggcgactca cagccagcag tttgaggagt cagaggaatt ccaggccctg ctgaagcggc
     1921 tgccggacga caggttcctg aactccacag ccatctccca gttctgggcc atggacacca
     1981 gcctccagca tcgctaccag cagctgggag ccagcttgaa agtgctgttc aagaagaccc
     2041 atcggatcgt ccgccggctc ttcaacctct gcaagcgttg ccaccggcag ccccgcttcc
     2101 gcctgcccaa ggagaggtct ttgtcctact ggtggaaccg tatccagtcc ttcctctact
     2161 gtggagagag caccttccct ggcaccttcc tggaacagag ccacagctgc acctgcccct
     2221 acgaccagtc ctcctgccag ggccccatcc cttgtgcctt gggcgaaggg cccgcctgtg
     2281 cccactgtgc cccagacaac agcacacgct gtgggagctg caacccaggc tacgtgctcg
     2341 cccagggctt gtgccgcccc gaggtggccg agtcgctgga gaactttctg gggctggaga
     2401 cagacctgca ggacctggag ctgaagtacc tgctgcagaa gtgggacagc cgcatcgagg
     2461 tgcactccat cttcatcagc aatgacatgc gcctgggcag ctggttcgac ccttcctgga
     2521 ggaaacgcat gctgctcacc ctgaagagca acaagtacaa gcccgggctg gtgcacgtga
     2581 tgctggccct gtccctgcag atctgcctca ccaagaacag caccctggag cctgtcatgg
     2641 ccatctacgt caaccccttt gggggcagcc actctgagag ctggttcatg cccgtgaacg
     2701 agggcaattt cccagactgg gaaaggacta atgtggatgc tgctgcccag tgccaaaact
     2761 ggactattac tttgggcaac aggtggaaga ccttctttga gacagtccat gtttacctac
     2821 ggagccgaat caagtccctg gacgacagct ccaatgagac gatctactac gagcctctgg
     2881 agatgaccga tccctccaag aacttgggct acatgaaaat caacacgttg caggtctttg
     2941 gctacagcct gccctttgac ccggatgcca tccgggactt aattctccag ttagactacc
     3001 cgtatactca aggttcccag gactctgccc tcttgcagct catcgaactt agggaccggg
     3061 tcaaccagct ttccccacct ggcaaggtgc ggcttgacct tttctcctgc ttgctccggc
     3121 atcggctcaa actggccaac aatgaggtgg gcaggatcca gtcgtctctg agggctttca
     3181 actcgaagct gccaaaccct gtggagtatg agacaggcaa actctgtagc taatggggga
     3241 cccactccag tgccgggcag ggaggggatc catgaatccg gggtgcaaag atctaagccc
     3301 tcaccttagt gccaacgggg tgttccctta agactgcacc cagcagatgg gactcggggc
     3361 ttgaactgaa gcaggcagga gagaaggaaa cagccgctgc acacactcac cacgcgtgtg
     3421 cacacgcgcg cacactcaca aggggaggcg agcactcagc agccttgtat ctgtgaagcg
     3481 ggtgctttct catgaatgca gttgaaggag agggagccag ggagagcttc agcaaaggaa
     3541 ccagcccaac tgtgcaacac acacattctt aaaagtgatt cttagcattc aggaaagcaa
     3601 gagggaacaa caatgggaga ggtggcagca ccgcctcccc cgctgtggag tcacttttgt
     3661 attcttttta gccagatttc ttaaatggcg ttgtttcatg attccccaca gtggttctta
     3721 cttttcgttc gctgcctcct ctgagccctc cagacacaga ccgttcctca ggccagctcc
     3781 cttggggaaa caggaagcga cacccacgga ggaccactca gggcagccag gcagccctgc
     3841 tgccctccct ctccctcggc ccccttgctt ccttggcctc cccagtgtca gggcctggct
     3901 ggctccacgt tccccttgtg gtccagccag agctcctctc ccaacagcat ctgttctgtc
     3961 caagaaagca gctctgtcaa gttaagagac aatgtatagg gaaatgttct ttttaaaaaa
     4021 caaaaaaaac aaaaaatatt tattttgtga ttgtttttct tgtcaatctg ctccagccac
     4081 atgaacgtat gagtaaaaac ttgcctggtt taatatatat atgttttaaa aaggctgttt
     4141 tttaggggaa aaaaatgaga gagaaaagag aggggaaaaa agagtatagt tccctgggct
     4201 gcctggattt ttaaaaattg ggtgtgcatg gatggaggat attgctatgt aggaggctgg
     4261 ttgatctgtg tacacacagg tgcatgcgtg tctggcttga atgtgtgtgc gtgtgtgtgt
     4321 g
//
LOCUS       XR_004347102            1320 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744619
            (LOC116744619), ncRNA.
ACCESSION   XR_004347102
VERSION     XR_004347102.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1320
                     /gene="LOC116744619"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744619"
     ncRNA           1..1320
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744619"
                     /product="uncharacterized LOC116744619"
                     /db_xref="GeneID:116744619"
ORIGIN      
        1 gacaacatgt aggcgatgta ttccaaccac tcgtaaggta gctctgccca tcatgaccac
       61 tattttcgta tttgtgaaaa gaagccagga accggatctg aactattcct gatatccagt
      121 atttgaagca atcttcattt ctgtttttgg ctatgcatgc acgagtatgc attatattat
      181 cagcagcagg tgttaaatgt atcatttagt gttagaggta ttagtctcga acattagggc
      241 agattagcat ttgatatatt agttctttgg ggttacaatt gatgcttgaa tttccgattg
      301 ttatatctag taactgaatt gtgatttggc tcttaattcc acgatgagtt caccaacatt
      361 gacaaaccta gtactaatta attaatgaca attcttgatt tgcaaccatg tctgagaaaa
      421 gataactcac atcttctgat tattatagac tcttaaggca atcatttggg gacagccttt
      481 ccttatggca tttctcagcc tagctttctg agaaactcat gctgaattca tggtttcaag
      541 cttttaaaag cctcttaaga aatcctgccc atcctttacc cgccccccct cgacttcctc
      601 cacctgcctt gtggaagcca agtctttggt ctgctgcttt gatccaagct cttctacacc
      661 agatacccca tcactgcctt ggaacggagg agtcagacat ctgtcacaga tatcagcagg
      721 caagaagtgg aaatctttgt aactagatgc atatatttct aaaaccatat cataccagca
      781 tcttcccaga gccttcctaa gacaaggagt ctgagaagcc ttcaggggag ttgtgaagaa
      841 agaaacgccc taggctgttt atctaccaag gatttcaggt cctcctggat cgatggtaca
      901 gtaatagact gctgaattcc tctctttgca aaaataaacg aagatggctc tgggcagaga
      961 gacatgacca tcctttctgt ctcccagttc attttgtacc aaccaagatg taccacaggt
     1021 aaggaatgag gtacttagta tttacatggt gactttcgcc tgaataaaat gggggttgtc
     1081 atgcctacac attgtacttg gatcatgtgg agaacagaca gagaattggt tctccaaaag
     1141 atctgctata aaatgcttct cataccacct gggggaggca ctaagggaga atgatgcatt
     1201 gttccgtgtg gcttatgtca aacctgactt ttaggctggg aaagtagtaa tcagacagaa
     1261 tggagaaaac caaggccatg tctgcatggt tcccaatttc ctcaaaggca atcccagacc
//
LOCUS       XR_004347103             418 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744625
            (LOC116744625), ncRNA.
ACCESSION   XR_004347103
VERSION     XR_004347103.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..418
                     /gene="LOC116744625"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744625"
     ncRNA           1..418
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744625"
                     /product="uncharacterized LOC116744625"
                     /db_xref="GeneID:116744625"
ORIGIN      
        1 ctgtctcata ctccacaggg tttggcagct tcgagttgaa agccctcaga gacgactgga
       61 tcctgcccac ctcattgttg gccagtttga gccgatgccg gagcaagcag gagaaaaggt
      121 caagccgcac cttgccaggg tgagcagcat gcgtttcctc caggaagggt cgaaccagct
      181 gcccaggcgc atgtcattgc tgatgaagat ggagtgcacc tcgatgcggc tgtcccactt
      241 ctgcagcaga tacaactcat aactgagaat gacacgcagg tatgtcaaga taataggaga
      301 ctctaacagg ccgtgtgtgc gtcagcattc ccagctctgc tgtgttggac aggggtcctg
      361 cccggcctca gcggctgtca tgggtgacgt gctctggctc gggcatctgg ggtgctca
//
LOCUS       XM_032614666            1732 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NPHS2 stomatin family member, podocin
            (NPHS2), transcript variant X1, mRNA.
ACCESSION   XM_032614666
VERSION     XM_032614666.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1732
                     /gene="NPHS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744629"
     CDS             39..1190
                     /gene="NPHS2"
                     /codon_start=1
                     /product="podocin isoform X1"
                     /protein_id="XP_032470557.1"
                     /db_xref="GeneID:116744629"
                     /translation="MEKRARSSSREAHGRGSGSAHKENKRAKAERGGRGRGRRDAGPE
                     QMALGRAGSSGEPRAPAATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSSLGACE
                     WLLVLTSLLFIIVTFPFSIWFCIKVIQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLD
                     TYHKVDLRLQTLEIPFHEVVTKDMFVMEIDAICYYRMENASLLLSSLAHVSKAVQFLV
                     QTTMKRLLAHRSLTEILLERKSIAQDVKVALDAVTCIWGIKVERTEIKDVRLPAGLQH
                     SLAVEAEAQRQAKVRMIAAEGEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEK
                     PSTVVLPLPFDLLNFLSSPSSRTQGSIPLPNPSKPVEPLNPKKKDSPML"
     misc_feature    402..1070
                     /gene="NPHS2"
                     /note="Podocin, a subgroup of the stomatin-like proteins
                     (slipins) family; belonging to the SPFH (stomatin,
                     prohibitin, flotillin, and HflK/C) superfamily; Region:
                     SPFH_podocin; cd08827"
                     /db_xref="CDD:259809"
ORIGIN      
        1 ttgcaggaac tgcgctcctg gattcggtcg ttctgaggat ggagaaaagg gctcggagct
       61 cctccagaga ggcccacggg agaggcagcg ggtccgccca caaagagaac aagagggcga
      121 aggctgagag gggcggcaga ggccgcgggc gccgggacgc cgggccggag cagatggccc
      181 tcgggcgggc agggagctcg ggtgagcccc gagcgcctgc agccaccgtg gtggacgtgg
      241 atgaggtccg gggctctggc gaggagggca ccgaggtggt ggcgctgctg gagagcgagc
      301 ggcccgagga aggtaccaag tcttccagtt taggggcttg tgagtggctt cttgtcctca
      361 catccctgct cttcatcatt gtgaccttcc ctttttctat ctggttctgc ataaaggtta
      421 tacaggagta tgagagagta attatattcc gactgggaca tctgcttcct ggaagagcca
      481 aaggccctgg ccttttcttc tttttgccct gcctggatac ctaccacaag gttgaccttc
      541 gcctccaaac cttggagata ccctttcatg aggttgtaac caaagacatg tttgtaatgg
      601 agatagatgc catctgctac taccgaatgg aaaatgcctc tcttctccta agcagtcttg
      661 ctcatgtgtc caaagcagtc caattccttg tgcagaccac catgaagcgt ctcctagcac
      721 atcgatccct cactgaaatt cttctagaga ggaagagcat tgcacaagat gtaaaggttg
      781 ccttggatgc agtgacctgt atttggggaa tcaaagtgga gagaacagaa attaaggatg
      841 tgaggttgcc agccgggctg cagcactcgc tggcggtgga ggccgaagca cagagacagg
      901 ccaaagtgcg gatgatcgct gcggaagggg agaaggctgc gtccgagtcc ctgaggatgg
      961 cagccgagat tctatcaggc actccagctg ctgttcagct tcggtacctc cacaccctgc
     1021 aatccttgtc cacagagaag ccttccacag tggttttacc tttgccattt gacttgctaa
     1081 atttcctgtc ttctccaagc agtagaactc aaggaagcat ccctttacca aatccttcca
     1141 aacctgttga gccactgaac cctaaaaaga aagactctcc catgttatag gaggaaacaa
     1201 ggataatgtg actgcaaaga gggctgccat ataacagcta cagccctaag caaggccccc
     1261 tgtcctcact tcctgccctt tggttgccat gtggaatgcc cttggaatgt atgaagtcac
     1321 aatgcagcaa cacacgagaa gacagtgaaa tcatgtaatg acagagaagc catataacat
     1381 gcttaggtgg atcatctaac cagagtaatt atgggaaaga gctttagcca gcattctact
     1441 ttggaaagaa ttttgagtct atatgtggct aaattttgac ttcagatgta gttcaaatgt
     1501 ccttttcgct gtatgccctc tggccccttt ggcaaggtct ttgttgctcc cacagccctt
     1561 tctacatgtc cctatcatta tgcttatcac actctgttgt aatcttgaga tgcaggcttc
     1621 tctccaactc tccacgcaag tggcacttcc gtgtttctga gtgaatgaaa gaaaaagaga
     1681 tgtacttggg ctggatataa aatttacacc taattaaaga acttaaaagg aa
//
LOCUS       XM_032614674            1621 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NPHS2 stomatin family member, podocin
            (NPHS2), transcript variant X2, mRNA.
ACCESSION   XM_032614674
VERSION     XM_032614674.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1621
                     /gene="NPHS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744629"
     CDS             39..1079
                     /gene="NPHS2"
                     /codon_start=1
                     /product="podocin isoform X2"
                     /protein_id="XP_032470565.1"
                     /db_xref="GeneID:116744629"
                     /translation="MEKRARSSSREAHGRGSGSAHKENKRAKAERGGRGRGRRDAGPE
                     QMALGRAGSSGTKSSSLGACEWLLVLTSLLFIIVTFPFSIWFCIKVIQEYERVIIFRL
                     GHLLPGRAKGPGLFFFLPCLDTYHKVDLRLQTLEIPFHEVVTKDMFVMEIDAICYYRM
                     ENASLLLSSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKSIAQDVKVALDAVTCI
                     WGIKVERTEIKDVRLPAGLQHSLAVEAEAQRQAKVRMIAAEGEKAASESLRMAAEILS
                     GTPAAVQLRYLHTLQSLSTEKPSTVVLPLPFDLLNFLSSPSSRTQGSIPLPNPSKPVE
                     PLNPKKKDSPML"
     misc_feature    291..959
                     /gene="NPHS2"
                     /note="Podocin, a subgroup of the stomatin-like proteins
                     (slipins) family; belonging to the SPFH (stomatin,
                     prohibitin, flotillin, and HflK/C) superfamily; Region:
                     SPFH_podocin; cd08827"
                     /db_xref="CDD:259809"
ORIGIN      
        1 ttgcaggaac tgcgctcctg gattcggtcg ttctgaggat ggagaaaagg gctcggagct
       61 cctccagaga ggcccacggg agaggcagcg ggtccgccca caaagagaac aagagggcga
      121 aggctgagag gggcggcaga ggccgcgggc gccgggacgc cgggccggag cagatggccc
      181 tcgggcgggc agggagctcg ggtaccaagt cttccagttt aggggcttgt gagtggcttc
      241 ttgtcctcac atccctgctc ttcatcattg tgaccttccc tttttctatc tggttctgca
      301 taaaggttat acaggagtat gagagagtaa ttatattccg actgggacat ctgcttcctg
      361 gaagagccaa aggccctggc cttttcttct ttttgccctg cctggatacc taccacaagg
      421 ttgaccttcg cctccaaacc ttggagatac cctttcatga ggttgtaacc aaagacatgt
      481 ttgtaatgga gatagatgcc atctgctact accgaatgga aaatgcctct cttctcctaa
      541 gcagtcttgc tcatgtgtcc aaagcagtcc aattccttgt gcagaccacc atgaagcgtc
      601 tcctagcaca tcgatccctc actgaaattc ttctagagag gaagagcatt gcacaagatg
      661 taaaggttgc cttggatgca gtgacctgta tttggggaat caaagtggag agaacagaaa
      721 ttaaggatgt gaggttgcca gccgggctgc agcactcgct ggcggtggag gccgaagcac
      781 agagacaggc caaagtgcgg atgatcgctg cggaagggga gaaggctgcg tccgagtccc
      841 tgaggatggc agccgagatt ctatcaggca ctccagctgc tgttcagctt cggtacctcc
      901 acaccctgca atccttgtcc acagagaagc cttccacagt ggttttacct ttgccatttg
      961 acttgctaaa tttcctgtct tctccaagca gtagaactca aggaagcatc cctttaccaa
     1021 atccttccaa acctgttgag ccactgaacc ctaaaaagaa agactctccc atgttatagg
     1081 aggaaacaag gataatgtga ctgcaaagag ggctgccata taacagctac agccctaagc
     1141 aaggccccct gtcctcactt cctgcccttt ggttgccatg tggaatgccc ttggaatgta
     1201 tgaagtcaca atgcagcaac acacgagaag acagtgaaat catgtaatga cagagaagcc
     1261 atataacatg cttaggtgga tcatctaacc agagtaatta tgggaaagag ctttagccag
     1321 cattctactt tggaaagaat tttgagtcta tatgtggcta aattttgact tcagatgtag
     1381 ttcaaatgtc cttttcgctg tatgccctct ggcccctttg gcaaggtctt tgttgctccc
     1441 acagcccttt ctacatgtcc ctatcattat gcttatcaca ctctgttgta atcttgagat
     1501 gcaggcttct ctccaactct ccacgcaagt ggcacttccg tgtttctgag tgaatgaaag
     1561 aaaaagagat gtacttgggc tggatataaa atttacacct aattaaagaa cttaaaagga
     1621 a
//
LOCUS       XM_032614685            1371 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cation channel sperm associated 4
            (CATSPER4), mRNA.
ACCESSION   XM_032614685
VERSION     XM_032614685.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1371
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1371
                     /gene="CATSPER4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:116744638"
     CDS             1..1371
                     /gene="CATSPER4"
                     /codon_start=1
                     /product="cation channel sperm-associated protein 4"
                     /protein_id="XP_032470576.1"
                     /db_xref="GeneID:116744638"
                     /translation="MAHTQRTWWQHWTDTTYIKPLNRMVGGTCLTAAHEPYLRPEEQV
                     LINRRDITSSKDAWDMQEFITRMYVKKLLRHPAFQLLLAMLLVVNAITIALRTNSVLG
                     QKHYELFCTIDDIVLTILICELLLGWLNGFWIFWKDGWNILNFLIVFILLLGFFVNEL
                     SAISITYTLRALRLVHLCMAVEPLARIIRVILQSVPDMANIMALILFFMLVFSVFGVT
                     LFGAFVPMHFQNMQVALYTLFICITQDGWVDIYSNFQMETREYAVEIGGAIYFAIFIT
                     VSAFIGINLLVVVVTTNLEQMIKAGEQGQQHQIAFSETGSEEGNGNNELPLVHCVVAR
                     LETSGVPQEPFMGGLPTNLSENTFDNFCLVLEAIQENLMQYKEIRDELNTIVDEVRSI
                     RFNQEQEEELMHRHLSWSPSRASGFSIATREMTCQQDLITALVNREKVQESNTNVLLN
                     KHKSSR"
     misc_feature    223..891
                     /gene="CATSPER4"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
ORIGIN      
        1 atggcgcata cccagaggac ctggtggcag cactggaccg acaccaccta tatcaagcct
       61 ttgaaccgca tggtaggtgg tacctgcctg actgccgctc acgagcccta cctccggcca
      121 gaggagcaag tgctcatcaa ccgccgagat atcactagca gtaaggatgc ctgggacatg
      181 caggagttca tcactcgcat gtatgtcaag aagctgctcc gacacccggc cttccagctg
      241 ctgctggcca tgctgctggt ggtcaacgcc atcaccattg ctctccgcac caactccgtt
      301 cttggccaga aacactatga gttgttctgt accatagatg acattgtgct gactatcctt
      361 atctgtgaac ttctcctcgg ctggttaaat ggcttctgga ttttctggaa ggacggctgg
      421 aacatcctca acttccttat cgtctttatc ttgctcctgg ggttcttcgt taatgaactc
      481 agtgccatct ctatcaccta caccctcagg gcacttcgtc tggtgcacct gtgcatggca
      541 gtggagcccc tggcccggat catccgtgtc atcctgcagt cagtgcccga catggccaac
      601 atcatggcgc tcatcctctt cttcatgctg gtgttctcag tattcggggt cactctcttc
      661 ggtgcatttg tgcccatgca tttccagaac atgcaggttg ccctgtatac cctcttcatc
      721 tgcatcaccc aggatggctg ggtggacatc tacagtaact ttcagatgga gacaagggag
      781 tacgcagtgg agattggggg cgccatctac tttgccatct tcatcaccgt cagtgccttc
      841 attggcatca acctgttggt cgtcgtggtc accaccaatc tggagcaaat gataaaggca
      901 ggcgaacagg ggcaacagca tcaaatagcc ttcagtgaga caggcagcga ggagggaaat
      961 gggaataacg agctgccgct ggtgcactgt gtggtcgccc gtttggagac atctggcgtc
     1021 ccccaggagc cgtttatggg gggcctcccg acgaacctct cagaaaacac attcgacaac
     1081 ttctgcttgg tgctcgaggc aatacaggag aacctgatgc agtacaagga gatccgagat
     1141 gagctcaaca cgatagtgga cgaagtacgc tccatccgct tcaaccagga acaggaggag
     1201 gagctgatgc acaggcactt gtcgtggagc ccgtcgaggg cgagcgggtt ctccatagcc
     1261 acccgtgaga tgacttgcca gcaagacttg atcactgcgc tcgtcaacag ggaaaaggtt
     1321 caggaatcca acacaaatgt actccttaac aaacacaagt ccagccgctg a
//
LOCUS       XM_032614695            2484 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X1, mRNA.
ACCESSION   XM_032614695
VERSION     XM_032614695.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2484
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744648"
     CDS             103..1584
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X1"
                     /protein_id="XP_032470586.1"
                     /db_xref="GeneID:116744648"
                     /translation="MLPRWELSFYLFASLGFHFYSFYEVYKVSREHEEELDQEFDLDT
                     GTLFGGLKKDPTDFEWSFWMEWGKQRLVWLLLGHMGVSQVANLLARKHKPWILTAYGM
                     WACWCVLGTQGTAMVLIHTTISFCVAQFRSPFLSWLCSLFLLSTLRLQDVEEVMRGWY
                     QTENEYYLLQFTLTVRCLYYTSSSLELCWKQPLAEHTFCSFPWMVAYVFYYPVFHNGP
                     ILSFPEFIAQMQRQEQGSPKASLSILARGLGRLLSCWWLAELMLHFMYMHAIYSSTSL
                     LRAVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPPLPRCVSTMFSFTGM
                     WRYFDVGLHDFLVRYVYIPAGGSQHGLLGTLFSTAMTFAFVSFWHGGNDYLWCWATLN
                     WLGVTVENGVQRLVQAPRVQDSLAQFLSPQARRRLHAALASCSTSMLILSNLVFLGGN
                     QVGKIYWNRIFIQGWPCVTLSVLGFLYCYSHVGIAWAQTYSVN"
     misc_feature    475..1428
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; pfam03062"
                     /db_xref="CDD:427117"
ORIGIN      
        1 ccgggggaag agggcggctt cccgggaagt ccgtcgccgc tgccgccgcc gggtcggaga
       61 aactctcagc gtgggccacg ggaccctttg tcacaaggag caatgctgcc ccgatgggaa
      121 ctgtcttttt acctgtttgc ttccctaggc ttccacttct attctttcta cgaagtttac
      181 aaagtctcca gagaacatga agaggaactg gaccaagaat ttgacctgga cactggcact
      241 ttatttggag gattaaagaa ggacccaact gactttgagt ggagcttctg gatggagtgg
      301 ggcaagcagc ggctggtgtg gcttctcctt ggccacatgg gtgtgtctca agtagccaac
      361 ctgcttgcaa ggaagcacaa accctggatc ctcacagcct atgggatgtg ggcctgctgg
      421 tgtgtgctgg ggacccaagg cacagccatg gttcttattc acaccaccat ctccttctgt
      481 gttgcccagt tccggtcgcc gttcctgtca tggctctgtt ctctcttcct gctctctaca
      541 ctgaggcttc aagatgtgga ggaagttatg agagggtggt accagacgga aaatgagtac
      601 tacttgctgc agttcacact gaccgttcgc tgcctgtact acaccagctc cagcctggag
      661 ctctgctgga agcagccgct ggctgagcac accttctgct cctttccctg gatggtggcc
      721 tatgtcttct actacccagt cttccacaac gggcccatcc tcagcttccc ggagttcatc
      781 gcacagatgc agcggcagga gcagggctcg cccaaggcca gcctttccat ccttgcccgg
      841 gggctgggcc gcctcctctc ctgttggtgg ctggcggagc tgatgcttca ttttatgtac
      901 atgcacgcca tctacagcag cacctccctc ctgagggccg tctcatgttg gaccttagga
      961 ggactggcgt tggcccaagt gctcttcttc tatgtgaagt acttggtgct ctttggtgtc
     1021 ccagctctgc tcatgcgcct ggatggactc acgccaccgc ccctccctcg ctgtgtgagc
     1081 accatgttca gtttcacggg gatgtggagg tattttgacg ttggactgca tgatttcttg
     1141 gttaggtatg tgtacattcc agcgggcggg tcccagcacg gcctgctagg gacactgttt
     1201 tccactgcaa tgacgtttgc gtttgtgagc ttctggcatg gtgggaatga ctacctctgg
     1261 tgctgggcaa cactcaactg gctgggagtc accgtggaga acggagtcca gaggcttgtg
     1321 caggcgccgc gtgtccagga cagcttggcc cagttcctct ccccacaagc tcgccgtcga
     1381 ctccatgctg ccctggcatc ttgttccacc tccatgctga tcctgtccaa cctggtgttt
     1441 cttgggggca atcaagtcgg gaaaatctac tggaatagga tcttcataca aggctggccg
     1501 tgtgtgaccc tctctgtcct gggattcctg tactgctact cccacgtggg cattgcctgg
     1561 gcccagacat actccgtgaa ctaatggcgc tgggccccgg tcagcccttt tggctggctt
     1621 ccaagacaaa tattgcttca ccctgacctt gcacctcaag gtaacctcca ggggagcagt
     1681 gcctgatctg ctcatctttt gtcgaagtta cctcactcca agactggaag cttgagctct
     1741 cataactttg ggaacttaga gatcatcttc ccagccttcc tgttgagtaa gctggggtcc
     1801 aaagcagtaa agtgtcttgc ctagctgcac atggtgacgt gatccagaat ccagtcccaa
     1861 gggcccttta ggttctttct cctttaccaa gaatgaaatg taatagacat ttcttgactg
     1921 aggcatagaa attctcatta gtgataggcc tgtcctcccc tgggcggtat ttctgaaaca
     1981 tgttgggtca gtggcattcg agtgtcccct tccccatgtc ctgcagtgta gtctgtagaa
     2041 ccagccctgg gttcagcttc acacttcagc tcctcagcag ggaggtgaca aagccacaaa
     2101 gccagggagg tgtttctaat taccgggtca gagaagactg aatgtgttct gtggcattgc
     2161 aaggagtcag tacccaagga gagctgttac ttgagcggat ctacatttgg ctgcttcttc
     2221 cctagatttg cagagaagta taaacatggc agttccccta cctgacagtt aactctttcc
     2281 caataaagaa gcagaattta aaaaccaagg aatagtgtat cacagacagg tgctatcagg
     2341 caagtcatag agggtaaaga tgacttcctg tggtctctcc tctcttcaca caagtctcag
     2401 cagtcatctt cccactgagc ggtttacact ctgtggttta ccttgttttg ttttgtttcc
     2461 aataaaatgg agccttttgt atca
//
LOCUS       XM_032614697            2480 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X2, mRNA.
ACCESSION   XM_032614697
VERSION     XM_032614697.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2480
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116744648"
     CDS             99..1580
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X1"
                     /protein_id="XP_032470588.1"
                     /db_xref="GeneID:116744648"
                     /translation="MLPRWELSFYLFASLGFHFYSFYEVYKVSREHEEELDQEFDLDT
                     GTLFGGLKKDPTDFEWSFWMEWGKQRLVWLLLGHMGVSQVANLLARKHKPWILTAYGM
                     WACWCVLGTQGTAMVLIHTTISFCVAQFRSPFLSWLCSLFLLSTLRLQDVEEVMRGWY
                     QTENEYYLLQFTLTVRCLYYTSSSLELCWKQPLAEHTFCSFPWMVAYVFYYPVFHNGP
                     ILSFPEFIAQMQRQEQGSPKASLSILARGLGRLLSCWWLAELMLHFMYMHAIYSSTSL
                     LRAVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPPLPRCVSTMFSFTGM
                     WRYFDVGLHDFLVRYVYIPAGGSQHGLLGTLFSTAMTFAFVSFWHGGNDYLWCWATLN
                     WLGVTVENGVQRLVQAPRVQDSLAQFLSPQARRRLHAALASCSTSMLILSNLVFLGGN
                     QVGKIYWNRIFIQGWPCVTLSVLGFLYCYSHVGIAWAQTYSVN"
     misc_feature    471..1424
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; pfam03062"
                     /db_xref="CDD:427117"
ORIGIN      
        1 gctacctcct ttcgcgtaca aaacgtacgt ggggaccact ggggctggac ttcagaaact
       61 ctcagcgtgg gccacgggac cctttgtcac aaggagcaat gctgccccga tgggaactgt
      121 ctttttacct gtttgcttcc ctaggcttcc acttctattc tttctacgaa gtttacaaag
      181 tctccagaga acatgaagag gaactggacc aagaatttga cctggacact ggcactttat
      241 ttggaggatt aaagaaggac ccaactgact ttgagtggag cttctggatg gagtggggca
      301 agcagcggct ggtgtggctt ctccttggcc acatgggtgt gtctcaagta gccaacctgc
      361 ttgcaaggaa gcacaaaccc tggatcctca cagcctatgg gatgtgggcc tgctggtgtg
      421 tgctggggac ccaaggcaca gccatggttc ttattcacac caccatctcc ttctgtgttg
      481 cccagttccg gtcgccgttc ctgtcatggc tctgttctct cttcctgctc tctacactga
      541 ggcttcaaga tgtggaggaa gttatgagag ggtggtacca gacggaaaat gagtactact
      601 tgctgcagtt cacactgacc gttcgctgcc tgtactacac cagctccagc ctggagctct
      661 gctggaagca gccgctggct gagcacacct tctgctcctt tccctggatg gtggcctatg
      721 tcttctacta cccagtcttc cacaacgggc ccatcctcag cttcccggag ttcatcgcac
      781 agatgcagcg gcaggagcag ggctcgccca aggccagcct ttccatcctt gcccgggggc
      841 tgggccgcct cctctcctgt tggtggctgg cggagctgat gcttcatttt atgtacatgc
      901 acgccatcta cagcagcacc tccctcctga gggccgtctc atgttggacc ttaggaggac
      961 tggcgttggc ccaagtgctc ttcttctatg tgaagtactt ggtgctcttt ggtgtcccag
     1021 ctctgctcat gcgcctggat ggactcacgc caccgcccct ccctcgctgt gtgagcacca
     1081 tgttcagttt cacggggatg tggaggtatt ttgacgttgg actgcatgat ttcttggtta
     1141 ggtatgtgta cattccagcg ggcgggtccc agcacggcct gctagggaca ctgttttcca
     1201 ctgcaatgac gtttgcgttt gtgagcttct ggcatggtgg gaatgactac ctctggtgct
     1261 gggcaacact caactggctg ggagtcaccg tggagaacgg agtccagagg cttgtgcagg
     1321 cgccgcgtgt ccaggacagc ttggcccagt tcctctcccc acaagctcgc cgtcgactcc
     1381 atgctgccct ggcatcttgt tccacctcca tgctgatcct gtccaacctg gtgtttcttg
     1441 ggggcaatca agtcgggaaa atctactgga ataggatctt catacaaggc tggccgtgtg
     1501 tgaccctctc tgtcctggga ttcctgtact gctactccca cgtgggcatt gcctgggccc
     1561 agacatactc cgtgaactaa tggcgctggg ccccggtcag cccttttggc tggcttccaa
     1621 gacaaatatt gcttcaccct gaccttgcac ctcaaggtaa cctccagggg agcagtgcct
     1681 gatctgctca tcttttgtcg aagttacctc actccaagac tggaagcttg agctctcata
     1741 actttgggaa cttagagatc atcttcccag ccttcctgtt gagtaagctg gggtccaaag
     1801 cagtaaagtg tcttgcctag ctgcacatgg tgacgtgatc cagaatccag tcccaagggc
     1861 cctttaggtt ctttctcctt taccaagaat gaaatgtaat agacatttct tgactgaggc
     1921 atagaaattc tcattagtga taggcctgtc ctcccctggg cggtatttct gaaacatgtt
     1981 gggtcagtgg cattcgagtg tccccttccc catgtcctgc agtgtagtct gtagaaccag
     2041 ccctgggttc agcttcacac ttcagctcct cagcagggag gtgacaaagc cacaaagcca
     2101 gggaggtgtt tctaattacc gggtcagaga agactgaatg tgttctgtgg cattgcaagg
     2161 agtcagtacc caaggagagc tgttacttga gcggatctac atttggctgc ttcttcccta
     2221 gatttgcaga gaagtataaa catggcagtt cccctacctg acagttaact ctttcccaat
     2281 aaagaagcag aatttaaaaa ccaaggaata gtgtatcaca gacaggtgct atcaggcaag
     2341 tcatagaggg taaagatgac ttcctgtggt ctctcctctc ttcacacaag tctcagcagt
     2401 catcttccca ctgagcggtt tacactctgt ggtttacctt gttttgtttt gtttccaata
     2461 aaatggagcc ttttgtatca
//
LOCUS       XM_032614705            2489 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X3, mRNA.
ACCESSION   XM_032614705
VERSION     XM_032614705.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2489
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116744648"
     CDS             108..1589
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X1"
                     /protein_id="XP_032470596.1"
                     /db_xref="GeneID:116744648"
                     /translation="MLPRWELSFYLFASLGFHFYSFYEVYKVSREHEEELDQEFDLDT
                     GTLFGGLKKDPTDFEWSFWMEWGKQRLVWLLLGHMGVSQVANLLARKHKPWILTAYGM
                     WACWCVLGTQGTAMVLIHTTISFCVAQFRSPFLSWLCSLFLLSTLRLQDVEEVMRGWY
                     QTENEYYLLQFTLTVRCLYYTSSSLELCWKQPLAEHTFCSFPWMVAYVFYYPVFHNGP
                     ILSFPEFIAQMQRQEQGSPKASLSILARGLGRLLSCWWLAELMLHFMYMHAIYSSTSL
                     LRAVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPPLPRCVSTMFSFTGM
                     WRYFDVGLHDFLVRYVYIPAGGSQHGLLGTLFSTAMTFAFVSFWHGGNDYLWCWATLN
                     WLGVTVENGVQRLVQAPRVQDSLAQFLSPQARRRLHAALASCSTSMLILSNLVFLGGN
                     QVGKIYWNRIFIQGWPCVTLSVLGFLYCYSHVGIAWAQTYSVN"
     misc_feature    480..1433
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; pfam03062"
                     /db_xref="CDD:427117"
ORIGIN      
        1 ctgcaattaa caaacggggt ggagaggtcc gtgcgctgct gggcgcaggc accggggccc
       61 acggaaactc tcagcgtggg ccacgggacc ctttgtcaca aggagcaatg ctgccccgat
      121 gggaactgtc tttttacctg tttgcttccc taggcttcca cttctattct ttctacgaag
      181 tttacaaagt ctccagagaa catgaagagg aactggacca agaatttgac ctggacactg
      241 gcactttatt tggaggatta aagaaggacc caactgactt tgagtggagc ttctggatgg
      301 agtggggcaa gcagcggctg gtgtggcttc tccttggcca catgggtgtg tctcaagtag
      361 ccaacctgct tgcaaggaag cacaaaccct ggatcctcac agcctatggg atgtgggcct
      421 gctggtgtgt gctggggacc caaggcacag ccatggttct tattcacacc accatctcct
      481 tctgtgttgc ccagttccgg tcgccgttcc tgtcatggct ctgttctctc ttcctgctct
      541 ctacactgag gcttcaagat gtggaggaag ttatgagagg gtggtaccag acggaaaatg
      601 agtactactt gctgcagttc acactgaccg ttcgctgcct gtactacacc agctccagcc
      661 tggagctctg ctggaagcag ccgctggctg agcacacctt ctgctccttt ccctggatgg
      721 tggcctatgt cttctactac ccagtcttcc acaacgggcc catcctcagc ttcccggagt
      781 tcatcgcaca gatgcagcgg caggagcagg gctcgcccaa ggccagcctt tccatccttg
      841 cccgggggct gggccgcctc ctctcctgtt ggtggctggc ggagctgatg cttcatttta
      901 tgtacatgca cgccatctac agcagcacct ccctcctgag ggccgtctca tgttggacct
      961 taggaggact ggcgttggcc caagtgctct tcttctatgt gaagtacttg gtgctctttg
     1021 gtgtcccagc tctgctcatg cgcctggatg gactcacgcc accgcccctc cctcgctgtg
     1081 tgagcaccat gttcagtttc acggggatgt ggaggtattt tgacgttgga ctgcatgatt
     1141 tcttggttag gtatgtgtac attccagcgg gcgggtccca gcacggcctg ctagggacac
     1201 tgttttccac tgcaatgacg tttgcgtttg tgagcttctg gcatggtggg aatgactacc
     1261 tctggtgctg ggcaacactc aactggctgg gagtcaccgt ggagaacgga gtccagaggc
     1321 ttgtgcaggc gccgcgtgtc caggacagct tggcccagtt cctctcccca caagctcgcc
     1381 gtcgactcca tgctgccctg gcatcttgtt ccacctccat gctgatcctg tccaacctgg
     1441 tgtttcttgg gggcaatcaa gtcgggaaaa tctactggaa taggatcttc atacaaggct
     1501 ggccgtgtgt gaccctctct gtcctgggat tcctgtactg ctactcccac gtgggcattg
     1561 cctgggccca gacatactcc gtgaactaat ggcgctgggc cccggtcagc ccttttggct
     1621 ggcttccaag acaaatattg cttcaccctg accttgcacc tcaaggtaac ctccagggga
     1681 gcagtgcctg atctgctcat cttttgtcga agttacctca ctccaagact ggaagcttga
     1741 gctctcataa ctttgggaac ttagagatca tcttcccagc cttcctgttg agtaagctgg
     1801 ggtccaaagc agtaaagtgt cttgcctagc tgcacatggt gacgtgatcc agaatccagt
     1861 cccaagggcc ctttaggttc tttctccttt accaagaatg aaatgtaata gacatttctt
     1921 gactgaggca tagaaattct cattagtgat aggcctgtcc tcccctgggc ggtatttctg
     1981 aaacatgttg ggtcagtggc attcgagtgt ccccttcccc atgtcctgca gtgtagtctg
     2041 tagaaccagc cctgggttca gcttcacact tcagctcctc agcagggagg tgacaaagcc
     2101 acaaagccag ggaggtgttt ctaattaccg ggtcagagaa gactgaatgt gttctgtggc
     2161 attgcaagga gtcagtaccc aaggagagct gttacttgag cggatctaca tttggctgct
     2221 tcttccctag atttgcagag aagtataaac atggcagttc ccctacctga cagttaactc
     2281 tttcccaata aagaagcaga atttaaaaac caaggaatag tgtatcacag acaggtgcta
     2341 tcaggcaagt catagagggt aaagatgact tcctgtggtc tctcctctct tcacacaagt
     2401 ctcagcagtc atcttcccac tgagcggttt acactctgtg gtttaccttg ttttgttttg
     2461 tttccaataa aatggagcct tttgtatca
//
LOCUS       XM_032614712            1534 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X4, mRNA.
ACCESSION   XM_032614712
VERSION     XM_032614712.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1534
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744648"
     CDS             99..1526
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X2"
                     /protein_id="XP_032470603.1"
                     /db_xref="GeneID:116744648"
                     /translation="MLPRWELSFYLFASLGFHFYSFYEVYKVSREHEEELDQEFDLDT
                     GTLFGGLKKDPTDFEWSFWMEWGKQRLVWLLLGHMGVSQVANLLARKHKPWILTAYGM
                     WACWCVLGTQGTAMVLIHTTISFCVAQFRSPFLSWLCSLFLLSTLRLQDVEEVMRGWY
                     QTENEYYLLQFTLTVRCLYYTSSSLELCWKQPLAEHTFCSFPWMVAYVFYYPVFHNGP
                     ILSFPEFIAQMQRQEQGSPKASLSILARGLGRLLSCWWLAELMLHFMYMHAIYSSTSL
                     LRAVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPPLPRCVSTMFSFTGM
                     WRYFDVGLHDFLVRYVYIPAGGSQHGLLGTLFSTAMTFAFVSFWHGGNDYLWCWATLN
                     WLGVTVENGVQRLVQAPRVQDSLAQFLSPQARRRLHAALASCSTSMLILSNLVFLGGN
                     QVGKIYWNRIFIQVGAEVAQHQPCQ"
     misc_feature    471..1424
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; pfam03062"
                     /db_xref="CDD:427117"
ORIGIN      
        1 gggaagaggg cggcttcccg ggaagtccgt cgccgctgcc gccgccgggt cggagaaact
       61 ctcagcgtgg gccacgggac cctttgtcac aaggagcaat gctgccccga tgggaactgt
      121 ctttttacct gtttgcttcc ctaggcttcc acttctattc tttctacgaa gtttacaaag
      181 tctccagaga acatgaagag gaactggacc aagaatttga cctggacact ggcactttat
      241 ttggaggatt aaagaaggac ccaactgact ttgagtggag cttctggatg gagtggggca
      301 agcagcggct ggtgtggctt ctccttggcc acatgggtgt gtctcaagta gccaacctgc
      361 ttgcaaggaa gcacaaaccc tggatcctca cagcctatgg gatgtgggcc tgctggtgtg
      421 tgctggggac ccaaggcaca gccatggttc ttattcacac caccatctcc ttctgtgttg
      481 cccagttccg gtcgccgttc ctgtcatggc tctgttctct cttcctgctc tctacactga
      541 ggcttcaaga tgtggaggaa gttatgagag ggtggtacca gacggaaaat gagtactact
      601 tgctgcagtt cacactgacc gttcgctgcc tgtactacac cagctccagc ctggagctct
      661 gctggaagca gccgctggct gagcacacct tctgctcctt tccctggatg gtggcctatg
      721 tcttctacta cccagtcttc cacaacgggc ccatcctcag cttcccggag ttcatcgcac
      781 agatgcagcg gcaggagcag ggctcgccca aggccagcct ttccatcctt gcccgggggc
      841 tgggccgcct cctctcctgt tggtggctgg cggagctgat gcttcatttt atgtacatgc
      901 acgccatcta cagcagcacc tccctcctga gggccgtctc atgttggacc ttaggaggac
      961 tggcgttggc ccaagtgctc ttcttctatg tgaagtactt ggtgctcttt ggtgtcccag
     1021 ctctgctcat gcgcctggat ggactcacgc caccgcccct ccctcgctgt gtgagcacca
     1081 tgttcagttt cacggggatg tggaggtatt ttgacgttgg actgcatgat ttcttggtta
     1141 ggtatgtgta cattccagcg ggcgggtccc agcacggcct gctagggaca ctgttttcca
     1201 ctgcaatgac gtttgcgttt gtgagcttct ggcatggtgg gaatgactac ctctggtgct
     1261 gggcaacact caactggctg ggagtcaccg tggagaacgg agtccagagg cttgtgcagg
     1321 cgccgcgtgt ccaggacagc ttggcccagt tcctctcccc acaagctcgc cgtcgactcc
     1381 atgctgccct ggcatcttgt tccacctcca tgctgatcct gtccaacctg gtgtttcttg
     1441 ggggcaatca agtcgggaaa atctactgga ataggatctt catacaagtg ggtgcagaag
     1501 tagctcagca ccagccgtgc cagtgaatac cagc
//
LOCUS       XM_032614722            2403 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X5, mRNA.
ACCESSION   XM_032614722
VERSION     XM_032614722.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2403
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744648"
     CDS             136..1503
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X3"
                     /protein_id="XP_032470613.1"
                     /db_xref="GeneID:116744648"
                     /translation="MLPRWELSFYLFASLGFHFYSFYEVYKVSREHEEELDQEFDLDT
                     GTLFGGLKKDPTDFEWSFWMEWGKQRLVWLLLGHMGVSQVANLLARKFRSPFLSWLCS
                     LFLLSTLRLQDVEEVMRGWYQTENEYYLLQFTLTVRCLYYTSSSLELCWKQPLAEHTF
                     CSFPWMVAYVFYYPVFHNGPILSFPEFIAQMQRQEQGSPKASLSILARGLGRLLSCWW
                     LAELMLHFMYMHAIYSSTSLLRAVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLD
                     GLTPPPLPRCVSTMFSFTGMWRYFDVGLHDFLVRYVYIPAGGSQHGLLGTLFSTAMTF
                     AFVSFWHGGNDYLWCWATLNWLGVTVENGVQRLVQAPRVQDSLAQFLSPQARRRLHAA
                     LASCSTSMLILSNLVFLGGNQVGKIYWNRIFIQGWPCVTLSVLGFLYCYSHVGIAWAQ
                     TYSVN"
     misc_feature    409..1347
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; pfam03062"
                     /db_xref="CDD:427117"
ORIGIN      
        1 gacgcgcgcg gggttggttc tctaaccgcc gctccggggg aagagggcgg cttcccggga
       61 agtccgtcgc cgctgccgcc gccgggtcgg agaaactctc agcgtgggcc acgggaccct
      121 ttgtcacaag gagcaatgct gccccgatgg gaactgtctt tttacctgtt tgcttcccta
      181 ggcttccact tctattcttt ctacgaagtt tacaaagtct ccagagaaca tgaagaggaa
      241 ctggaccaag aatttgacct ggacactggc actttatttg gaggattaaa gaaggaccca
      301 actgactttg agtggagctt ctggatggag tggggcaagc agcggctggt gtggcttctc
      361 cttggccaca tgggtgtgtc tcaagtagcc aacctgcttg caaggaagtt ccggtcgccg
      421 ttcctgtcat ggctctgttc tctcttcctg ctctctacac tgaggcttca agatgtggag
      481 gaagttatga gagggtggta ccagacggaa aatgagtact acttgctgca gttcacactg
      541 accgttcgct gcctgtacta caccagctcc agcctggagc tctgctggaa gcagccgctg
      601 gctgagcaca ccttctgctc ctttccctgg atggtggcct atgtcttcta ctacccagtc
      661 ttccacaacg ggcccatcct cagcttcccg gagttcatcg cacagatgca gcggcaggag
      721 cagggctcgc ccaaggccag cctttccatc cttgcccggg ggctgggccg cctcctctcc
      781 tgttggtggc tggcggagct gatgcttcat tttatgtaca tgcacgccat ctacagcagc
      841 acctccctcc tgagggccgt ctcatgttgg accttaggag gactggcgtt ggcccaagtg
      901 ctcttcttct atgtgaagta cttggtgctc tttggtgtcc cagctctgct catgcgcctg
      961 gatggactca cgccaccgcc cctccctcgc tgtgtgagca ccatgttcag tttcacgggg
     1021 atgtggaggt attttgacgt tggactgcat gatttcttgg ttaggtatgt gtacattcca
     1081 gcgggcgggt cccagcacgg cctgctaggg acactgtttt ccactgcaat gacgtttgcg
     1141 tttgtgagct tctggcatgg tgggaatgac tacctctggt gctgggcaac actcaactgg
     1201 ctgggagtca ccgtggagaa cggagtccag aggcttgtgc aggcgccgcg tgtccaggac
     1261 agcttggccc agttcctctc cccacaagct cgccgtcgac tccatgctgc cctggcatct
     1321 tgttccacct ccatgctgat cctgtccaac ctggtgtttc ttgggggcaa tcaagtcggg
     1381 aaaatctact ggaataggat cttcatacaa ggctggccgt gtgtgaccct ctctgtcctg
     1441 ggattcctgt actgctactc ccacgtgggc attgcctggg cccagacata ctccgtgaac
     1501 taatggcgct gggccccggt cagccctttt ggctggcttc caagacaaat attgcttcac
     1561 cctgaccttg cacctcaagg taacctccag gggagcagtg cctgatctgc tcatcttttg
     1621 tcgaagttac ctcactccaa gactggaagc ttgagctctc ataactttgg gaacttagag
     1681 atcatcttcc cagccttcct gttgagtaag ctggggtcca aagcagtaaa gtgtcttgcc
     1741 tagctgcaca tggtgacgtg atccagaatc cagtcccaag ggccctttag gttctttctc
     1801 ctttaccaag aatgaaatgt aatagacatt tcttgactga ggcatagaaa ttctcattag
     1861 tgataggcct gtcctcccct gggcggtatt tctgaaacat gttgggtcag tggcattcga
     1921 gtgtcccctt ccccatgtcc tgcagtgtag tctgtagaac cagccctggg ttcagcttca
     1981 cacttcagct cctcagcagg gaggtgacaa agccacaaag ccagggaggt gtttctaatt
     2041 accgggtcag agaagactga atgtgttctg tggcattgca aggagtcagt acccaaggag
     2101 agctgttact tgagcggatc tacatttggc tgcttcttcc ctagatttgc agagaagtat
     2161 aaacatggca gttcccctac ctgacagtta actctttccc aataaagaag cagaatttaa
     2221 aaaccaagga atagtgtatc acagacaggt gctatcaggc aagtcataga gggtaaagat
     2281 gacttcctgt ggtctctcct ctcttcacac aagtctcagc agtcatcttc ccactgagcg
     2341 gtttacactc tgtggtttac cttgttttgt tttgtttcca ataaaatgga gccttttgta
     2401 tca
//
LOCUS       XM_032614731            2366 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X6, mRNA.
ACCESSION   XM_032614731
VERSION     XM_032614731.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2366
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744648"
     CDS             99..1466
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X4"
                     /protein_id="XP_032470622.1"
                     /db_xref="GeneID:116744648"
                     /translation="MLPRWELSFYLFASLGFHFYSFYEVYKVSREHEEELDQEFDLDT
                     GTLFGGLKKHKPWILTAYGMWACWCVLGTQGTAMVLIHTTISFCVAQFRSPFLSWLCS
                     LFLLSTLRLQDVEEVMRGWYQTENEYYLLQFTLTVRCLYYTSSSLELCWKQPLAEHTF
                     CSFPWMVAYVFYYPVFHNGPILSFPEFIAQMQRQEQGSPKASLSILARGLGRLLSCWW
                     LAELMLHFMYMHAIYSSTSLLRAVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLD
                     GLTPPPLPRCVSTMFSFTGMWRYFDVGLHDFLVRYVYIPAGGSQHGLLGTLFSTAMTF
                     AFVSFWHGGNDYLWCWATLNWLGVTVENGVQRLVQAPRVQDSLAQFLSPQARRRLHAA
                     LASCSTSMLILSNLVFLGGNQVGKIYWNRIFIQGWPCVTLSVLGFLYCYSHVGIAWAQ
                     TYSVN"
     misc_feature    357..1310
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; pfam03062"
                     /db_xref="CDD:427117"
ORIGIN      
        1 gggaagaggg cggcttcccg ggaagtccgt cgccgctgcc gccgccgggt cggagaaact
       61 ctcagcgtgg gccacgggac cctttgtcac aaggagcaat gctgccccga tgggaactgt
      121 ctttttacct gtttgcttcc ctaggcttcc acttctattc tttctacgaa gtttacaaag
      181 tctccagaga acatgaagag gaactggacc aagaatttga cctggacact ggcactttat
      241 ttggaggatt aaagaagcac aaaccctgga tcctcacagc ctatgggatg tgggcctgct
      301 ggtgtgtgct ggggacccaa ggcacagcca tggttcttat tcacaccacc atctccttct
      361 gtgttgccca gttccggtcg ccgttcctgt catggctctg ttctctcttc ctgctctcta
      421 cactgaggct tcaagatgtg gaggaagtta tgagagggtg gtaccagacg gaaaatgagt
      481 actacttgct gcagttcaca ctgaccgttc gctgcctgta ctacaccagc tccagcctgg
      541 agctctgctg gaagcagccg ctggctgagc acaccttctg ctcctttccc tggatggtgg
      601 cctatgtctt ctactaccca gtcttccaca acgggcccat cctcagcttc ccggagttca
      661 tcgcacagat gcagcggcag gagcagggct cgcccaaggc cagcctttcc atccttgccc
      721 gggggctggg ccgcctcctc tcctgttggt ggctggcgga gctgatgctt cattttatgt
      781 acatgcacgc catctacagc agcacctccc tcctgagggc cgtctcatgt tggaccttag
      841 gaggactggc gttggcccaa gtgctcttct tctatgtgaa gtacttggtg ctctttggtg
      901 tcccagctct gctcatgcgc ctggatggac tcacgccacc gcccctccct cgctgtgtga
      961 gcaccatgtt cagtttcacg gggatgtgga ggtattttga cgttggactg catgatttct
     1021 tggttaggta tgtgtacatt ccagcgggcg ggtcccagca cggcctgcta gggacactgt
     1081 tttccactgc aatgacgttt gcgtttgtga gcttctggca tggtgggaat gactacctct
     1141 ggtgctgggc aacactcaac tggctgggag tcaccgtgga gaacggagtc cagaggcttg
     1201 tgcaggcgcc gcgtgtccag gacagcttgg cccagttcct ctccccacaa gctcgccgtc
     1261 gactccatgc tgccctggca tcttgttcca cctccatgct gatcctgtcc aacctggtgt
     1321 ttcttggggg caatcaagtc gggaaaatct actggaatag gatcttcata caaggctggc
     1381 cgtgtgtgac cctctctgtc ctgggattcc tgtactgcta ctcccacgtg ggcattgcct
     1441 gggcccagac atactccgtg aactaatggc gctgggcccc ggtcagccct tttggctggc
     1501 ttccaagaca aatattgctt caccctgacc ttgcacctca aggtaacctc caggggagca
     1561 gtgcctgatc tgctcatctt ttgtcgaagt tacctcactc caagactgga agcttgagct
     1621 ctcataactt tgggaactta gagatcatct tcccagcctt cctgttgagt aagctggggt
     1681 ccaaagcagt aaagtgtctt gcctagctgc acatggtgac gtgatccaga atccagtccc
     1741 aagggccctt taggttcttt ctcctttacc aagaatgaaa tgtaatagac atttcttgac
     1801 tgaggcatag aaattctcat tagtgatagg cctgtcctcc cctgggcggt atttctgaaa
     1861 catgttgggt cagtggcatt cgagtgtccc cttccccatg tcctgcagtg tagtctgtag
     1921 aaccagccct gggttcagct tcacacttca gctcctcagc agggaggtga caaagccaca
     1981 aagccaggga ggtgtttcta attaccgggt cagagaagac tgaatgtgtt ctgtggcatt
     2041 gcaaggagtc agtacccaag gagagctgtt acttgagcgg atctacattt ggctgcttct
     2101 tccctagatt tgcagagaag tataaacatg gcagttcccc tacctgacag ttaactcttt
     2161 cccaataaag aagcagaatt taaaaaccaa ggaatagtgt atcacagaca ggtgctatca
     2221 ggcaagtcat agagggtaaa gatgacttcc tgtggtctct cctctcttca cacaagtctc
     2281 agcagtcatc ttcccactga gcggtttaca ctctgtggtt taccttgttt tgttttgttt
     2341 ccaataaaat ggagcctttt gtatca
//
LOCUS       XM_032614741            2304 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X7, mRNA.
ACCESSION   XM_032614741
VERSION     XM_032614741.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2304
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744648"
     CDS             112..1404
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X5"
                     /protein_id="XP_032470632.1"
                     /db_xref="GeneID:116744648"
                     /translation="MEWGKQRLVWLLLGHMGVSQVANLLARKHKPWILTAYGMWACWC
                     VLGTQGTAMVLIHTTISFCVAQFRSPFLSWLCSLFLLSTLRLQDVEEVMRGWYQTENE
                     YYLLQFTLTVRCLYYTSSSLELCWKQPLAEHTFCSFPWMVAYVFYYPVFHNGPILSFP
                     EFIAQMQRQEQGSPKASLSILARGLGRLLSCWWLAELMLHFMYMHAIYSSTSLLRAVS
                     CWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPPLPRCVSTMFSFTGMWRYFD
                     VGLHDFLVRYVYIPAGGSQHGLLGTLFSTAMTFAFVSFWHGGNDYLWCWATLNWLGVT
                     VENGVQRLVQAPRVQDSLAQFLSPQARRRLHAALASCSTSMLILSNLVFLGGNQVGKI
                     YWNRIFIQGWPCVTLSVLGFLYCYSHVGIAWAQTYSVN"
     misc_feature    295..1248
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; pfam03062"
                     /db_xref="CDD:427117"
ORIGIN      
        1 agaacatgaa gaggaactgg accaagaatt tgacctggac actggcactt tatttggagg
       61 attaaagaag gtacagagtg ggacccaact gactttgagt ggagcttctg gatggagtgg
      121 ggcaagcagc ggctggtgtg gcttctcctt ggccacatgg gtgtgtctca agtagccaac
      181 ctgcttgcaa ggaagcacaa accctggatc ctcacagcct atgggatgtg ggcctgctgg
      241 tgtgtgctgg ggacccaagg cacagccatg gttcttattc acaccaccat ctccttctgt
      301 gttgcccagt tccggtcgcc gttcctgtca tggctctgtt ctctcttcct gctctctaca
      361 ctgaggcttc aagatgtgga ggaagttatg agagggtggt accagacgga aaatgagtac
      421 tacttgctgc agttcacact gaccgttcgc tgcctgtact acaccagctc cagcctggag
      481 ctctgctgga agcagccgct ggctgagcac accttctgct cctttccctg gatggtggcc
      541 tatgtcttct actacccagt cttccacaac gggcccatcc tcagcttccc ggagttcatc
      601 gcacagatgc agcggcagga gcagggctcg cccaaggcca gcctttccat ccttgcccgg
      661 gggctgggcc gcctcctctc ctgttggtgg ctggcggagc tgatgcttca ttttatgtac
      721 atgcacgcca tctacagcag cacctccctc ctgagggccg tctcatgttg gaccttagga
      781 ggactggcgt tggcccaagt gctcttcttc tatgtgaagt acttggtgct ctttggtgtc
      841 ccagctctgc tcatgcgcct ggatggactc acgccaccgc ccctccctcg ctgtgtgagc
      901 accatgttca gtttcacggg gatgtggagg tattttgacg ttggactgca tgatttcttg
      961 gttaggtatg tgtacattcc agcgggcggg tcccagcacg gcctgctagg gacactgttt
     1021 tccactgcaa tgacgtttgc gtttgtgagc ttctggcatg gtgggaatga ctacctctgg
     1081 tgctgggcaa cactcaactg gctgggagtc accgtggaga acggagtcca gaggcttgtg
     1141 caggcgccgc gtgtccagga cagcttggcc cagttcctct ccccacaagc tcgccgtcga
     1201 ctccatgctg ccctggcatc ttgttccacc tccatgctga tcctgtccaa cctggtgttt
     1261 cttgggggca atcaagtcgg gaaaatctac tggaatagga tcttcataca aggctggccg
     1321 tgtgtgaccc tctctgtcct gggattcctg tactgctact cccacgtggg cattgcctgg
     1381 gcccagacat actccgtgaa ctaatggcgc tgggccccgg tcagcccttt tggctggctt
     1441 ccaagacaaa tattgcttca ccctgacctt gcacctcaag gtaacctcca ggggagcagt
     1501 gcctgatctg ctcatctttt gtcgaagtta cctcactcca agactggaag cttgagctct
     1561 cataactttg ggaacttaga gatcatcttc ccagccttcc tgttgagtaa gctggggtcc
     1621 aaagcagtaa agtgtcttgc ctagctgcac atggtgacgt gatccagaat ccagtcccaa
     1681 gggcccttta ggttctttct cctttaccaa gaatgaaatg taatagacat ttcttgactg
     1741 aggcatagaa attctcatta gtgataggcc tgtcctcccc tgggcggtat ttctgaaaca
     1801 tgttgggtca gtggcattcg agtgtcccct tccccatgtc ctgcagtgta gtctgtagaa
     1861 ccagccctgg gttcagcttc acacttcagc tcctcagcag ggaggtgaca aagccacaaa
     1921 gccagggagg tgtttctaat taccgggtca gagaagactg aatgtgttct gtggcattgc
     1981 aaggagtcag tacccaagga gagctgttac ttgagcggat ctacatttgg ctgcttcttc
     2041 cctagatttg cagagaagta taaacatggc agttccccta cctgacagtt aactctttcc
     2101 caataaagaa gcagaattta aaaaccaagg aatagtgtat cacagacagg tgctatcagg
     2161 caagtcatag agggtaaaga tgacttcctg tggtctctcc tctcttcaca caagtctcag
     2221 cagtcatctt cccactgagc ggtttacact ctgtggttta ccttgttttg ttttgtttcc
     2281 aataaaatgg agccttttgt atca
//
LOCUS       XM_032614749            2252 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X8, mRNA.
ACCESSION   XM_032614749
VERSION     XM_032614749.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2252
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744648"
     CDS             99..1352
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X6"
                     /protein_id="XP_032470640.1"
                     /db_xref="GeneID:116744648"
                     /translation="MLPRWELSFYLFASLGFHFYSFYEVYKVSREHEEELDQEFDLDT
                     GTLFGGLKKFRSPFLSWLCSLFLLSTLRLQDVEEVMRGWYQTENEYYLLQFTLTVRCL
                     YYTSSSLELCWKQPLAEHTFCSFPWMVAYVFYYPVFHNGPILSFPEFIAQMQRQEQGS
                     PKASLSILARGLGRLLSCWWLAELMLHFMYMHAIYSSTSLLRAVSCWTLGGLALAQVL
                     FFYVKYLVLFGVPALLMRLDGLTPPPLPRCVSTMFSFTGMWRYFDVGLHDFLVRYVYI
                     PAGGSQHGLLGTLFSTAMTFAFVSFWHGGNDYLWCWATLNWLGVTVENGVQRLVQAPR
                     VQDSLAQFLSPQARRRLHAALASCSTSMLILSNLVFLGGNQVGKIYWNRIFIQGWPCV
                     TLSVLGFLYCYSHVGIAWAQTYSVN"
     misc_feature    258..1196
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; pfam03062"
                     /db_xref="CDD:427117"
ORIGIN      
        1 gggaagaggg cggcttcccg ggaagtccgt cgccgctgcc gccgccgggt cggagaaact
       61 ctcagcgtgg gccacgggac cctttgtcac aaggagcaat gctgccccga tgggaactgt
      121 ctttttacct gtttgcttcc ctaggcttcc acttctattc tttctacgaa gtttacaaag
      181 tctccagaga acatgaagag gaactggacc aagaatttga cctggacact ggcactttat
      241 ttggaggatt aaagaagttc cggtcgccgt tcctgtcatg gctctgttct ctcttcctgc
      301 tctctacact gaggcttcaa gatgtggagg aagttatgag agggtggtac cagacggaaa
      361 atgagtacta cttgctgcag ttcacactga ccgttcgctg cctgtactac accagctcca
      421 gcctggagct ctgctggaag cagccgctgg ctgagcacac cttctgctcc tttccctgga
      481 tggtggccta tgtcttctac tacccagtct tccacaacgg gcccatcctc agcttcccgg
      541 agttcatcgc acagatgcag cggcaggagc agggctcgcc caaggccagc ctttccatcc
      601 ttgcccgggg gctgggccgc ctcctctcct gttggtggct ggcggagctg atgcttcatt
      661 ttatgtacat gcacgccatc tacagcagca cctccctcct gagggccgtc tcatgttgga
      721 ccttaggagg actggcgttg gcccaagtgc tcttcttcta tgtgaagtac ttggtgctct
      781 ttggtgtccc agctctgctc atgcgcctgg atggactcac gccaccgccc ctccctcgct
      841 gtgtgagcac catgttcagt ttcacgggga tgtggaggta ttttgacgtt ggactgcatg
      901 atttcttggt taggtatgtg tacattccag cgggcgggtc ccagcacggc ctgctaggga
      961 cactgttttc cactgcaatg acgtttgcgt ttgtgagctt ctggcatggt gggaatgact
     1021 acctctggtg ctgggcaaca ctcaactggc tgggagtcac cgtggagaac ggagtccaga
     1081 ggcttgtgca ggcgccgcgt gtccaggaca gcttggccca gttcctctcc ccacaagctc
     1141 gccgtcgact ccatgctgcc ctggcatctt gttccacctc catgctgatc ctgtccaacc
     1201 tggtgtttct tgggggcaat caagtcggga aaatctactg gaataggatc ttcatacaag
     1261 gctggccgtg tgtgaccctc tctgtcctgg gattcctgta ctgctactcc cacgtgggca
     1321 ttgcctgggc ccagacatac tccgtgaact aatggcgctg ggccccggtc agcccttttg
     1381 gctggcttcc aagacaaata ttgcttcacc ctgaccttgc acctcaaggt aacctccagg
     1441 ggagcagtgc ctgatctgct catcttttgt cgaagttacc tcactccaag actggaagct
     1501 tgagctctca taactttggg aacttagaga tcatcttccc agccttcctg ttgagtaagc
     1561 tggggtccaa agcagtaaag tgtcttgcct agctgcacat ggtgacgtga tccagaatcc
     1621 agtcccaagg gccctttagg ttctttctcc tttaccaaga atgaaatgta atagacattt
     1681 cttgactgag gcatagaaat tctcattagt gataggcctg tcctcccctg ggcggtattt
     1741 ctgaaacatg ttgggtcagt ggcattcgag tgtccccttc cccatgtcct gcagtgtagt
     1801 ctgtagaacc agccctgggt tcagcttcac acttcagctc ctcagcaggg aggtgacaaa
     1861 gccacaaagc cagggaggtg tttctaatta ccgggtcaga gaagactgaa tgtgttctgt
     1921 ggcattgcaa ggagtcagta cccaaggaga gctgttactt gagcggatct acatttggct
     1981 gcttcttccc tagatttgca gagaagtata aacatggcag ttcccctacc tgacagttaa
     2041 ctctttccca ataaagaagc agaatttaaa aaccaaggaa tagtgtatca cagacaggtg
     2101 ctatcaggca agtcatagag ggtaaagatg acttcctgtg gtctctcctc tcttcacaca
     2161 agtctcagca gtcatcttcc cactgagcgg tttacactct gtggtttacc ttgttttgtt
     2221 ttgtttccaa taaaatggag ccttttgtat ca
//
LOCUS       XM_032614759            2171 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X9, mRNA.
ACCESSION   XM_032614759
VERSION     XM_032614759.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2171
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744648"
     CDS             99..1271
                     /gene="HHAT"
                     /codon_start=1
                     /product="protein-cysteine N-palmitoyltransferase HHAT
                     isoform X7"
                     /protein_id="XP_032470650.1"
                     /db_xref="GeneID:116744648"
                     /translation="MLPRWELSFYLFASLGFHFYSFYEVYKVSREHEEELDQEFDLDT
                     GTLFGGLKKRGWYQTENEYYLLQFTLTVRCLYYTSSSLELCWKQPLAEHTFCSFPWMV
                     AYVFYYPVFHNGPILSFPEFIAQMQRQEQGSPKASLSILARGLGRLLSCWWLAELMLH
                     FMYMHAIYSSTSLLRAVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPPL
                     PRCVSTMFSFTGMWRYFDVGLHDFLVRYVYIPAGGSQHGLLGTLFSTAMTFAFVSFWH
                     GGNDYLWCWATLNWLGVTVENGVQRLVQAPRVQDSLAQFLSPQARRRLHAALASCSTS
                     MLILSNLVFLGGNQVGKIYWNRIFIQGWPCVTLSVLGFLYCYSHVGIAWAQTYSVN"
     misc_feature    255..1115
                     /gene="HHAT"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; cl00738"
                     /db_xref="CDD:445070"
ORIGIN      
        1 gggaagaggg cggcttcccg ggaagtccgt cgccgctgcc gccgccgggt cggagaaact
       61 ctcagcgtgg gccacgggac cctttgtcac aaggagcaat gctgccccga tgggaactgt
      121 ctttttacct gtttgcttcc ctaggcttcc acttctattc tttctacgaa gtttacaaag
      181 tctccagaga acatgaagag gaactggacc aagaatttga cctggacact ggcactttat
      241 ttggaggatt aaagaagaga gggtggtacc agacggaaaa tgagtactac ttgctgcagt
      301 tcacactgac cgttcgctgc ctgtactaca ccagctccag cctggagctc tgctggaagc
      361 agccgctggc tgagcacacc ttctgctcct ttccctggat ggtggcctat gtcttctact
      421 acccagtctt ccacaacggg cccatcctca gcttcccgga gttcatcgca cagatgcagc
      481 ggcaggagca gggctcgccc aaggccagcc tttccatcct tgcccggggg ctgggccgcc
      541 tcctctcctg ttggtggctg gcggagctga tgcttcattt tatgtacatg cacgccatct
      601 acagcagcac ctccctcctg agggccgtct catgttggac cttaggagga ctggcgttgg
      661 cccaagtgct cttcttctat gtgaagtact tggtgctctt tggtgtccca gctctgctca
      721 tgcgcctgga tggactcacg ccaccgcccc tccctcgctg tgtgagcacc atgttcagtt
      781 tcacggggat gtggaggtat tttgacgttg gactgcatga tttcttggtt aggtatgtgt
      841 acattccagc gggcgggtcc cagcacggcc tgctagggac actgttttcc actgcaatga
      901 cgtttgcgtt tgtgagcttc tggcatggtg ggaatgacta cctctggtgc tgggcaacac
      961 tcaactggct gggagtcacc gtggagaacg gagtccagag gcttgtgcag gcgccgcgtg
     1021 tccaggacag cttggcccag ttcctctccc cacaagctcg ccgtcgactc catgctgccc
     1081 tggcatcttg ttccacctcc atgctgatcc tgtccaacct ggtgtttctt gggggcaatc
     1141 aagtcgggaa aatctactgg aataggatct tcatacaagg ctggccgtgt gtgaccctct
     1201 ctgtcctggg attcctgtac tgctactccc acgtgggcat tgcctgggcc cagacatact
     1261 ccgtgaacta atggcgctgg gccccggtca gcccttttgg ctggcttcca agacaaatat
     1321 tgcttcaccc tgaccttgca cctcaaggta acctccaggg gagcagtgcc tgatctgctc
     1381 atcttttgtc gaagttacct cactccaaga ctggaagctt gagctctcat aactttggga
     1441 acttagagat catcttccca gccttcctgt tgagtaagct ggggtccaaa gcagtaaagt
     1501 gtcttgccta gctgcacatg gtgacgtgat ccagaatcca gtcccaaggg ccctttaggt
     1561 tctttctcct ttaccaagaa tgaaatgtaa tagacatttc ttgactgagg catagaaatt
     1621 ctcattagtg ataggcctgt cctcccctgg gcggtatttc tgaaacatgt tgggtcagtg
     1681 gcattcgagt gtccccttcc ccatgtcctg cagtgtagtc tgtagaacca gccctgggtt
     1741 cagcttcaca cttcagctcc tcagcaggga ggtgacaaag ccacaaagcc agggaggtgt
     1801 ttctaattac cgggtcagag aagactgaat gtgttctgtg gcattgcaag gagtcagtac
     1861 ccaaggagag ctgttacttg agcggatcta catttggctg cttcttccct agatttgcag
     1921 agaagtataa acatggcagt tcccctacct gacagttaac tctttcccaa taaagaagca
     1981 gaatttaaaa accaaggaat agtgtatcac agacaggtgc tatcaggcaa gtcatagagg
     2041 gtaaagatga cttcctgtgg tctctcctct cttcacacaa gtctcagcag tcatcttccc
     2101 actgagcggt ttacactctg tggtttacct tgttttgttt tgtttccaat aaaatggagc
     2161 cttttgtatc a
//
LOCUS       XR_004347122            2278 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X10, misc_RNA.
ACCESSION   XR_004347122
VERSION     XR_004347122.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2278
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2278
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744648"
     misc_RNA        1..2278
                     /gene="HHAT"
                     /product="hedgehog acyltransferase, transcript variant
                     X10"
                     /db_xref="GeneID:116744648"
ORIGIN      
        1 gggaagaggg cggcttcccg ggaagtccgt cgccgctgcc gccgccgggt cggagaaact
       61 ctcagcgtgg gccacgggac cctttgtcac aaggagcaat gctgccccga tgggaactgt
      121 ctttttacct gtttgcttcc ctaggcttcc acttctattc tttctacgaa gtttacaaag
      181 tctccagaga acatgaagag gaactggacc aagaatttga cctggacact ggcactttat
      241 ttggaggatt aaagaaggac ccaactgact ttgagtggag cttctggatg gagtggggca
      301 agcagcggct ggtgtggctt ctccttggcc acatgggtgt gtctcaagta gccaacctgc
      361 ttgcaaggaa gcacaaaccc tggatcctca cagcctatgg gatgtgggcc tgctggtgtg
      421 tgctggggac ccaaggcaca gccatggttc ttattcacac caccatctcc ttctgtgttg
      481 cccagttccg gtcgccgttc ctgtcatggc tctgttctct cttcctgctc tctacactga
      541 ggcttcaaga tgtggaggaa gttatgagag ggtggtacca gacggaaaat gagtactact
      601 tgctgcagtt cacactgacc gttcgctgcc tgtactacac cagctccagc ctggagctct
      661 gctggaagca gccgctggct gagcacacct tctgctcctt tccctggatg gtggcctatg
      721 tcttctacta cccagtcttc cacaacgggc ccatcctcag cttcccggag ttcatcgcac
      781 agatgcagcg gcaggagcag ggctcgccca aggccagcct ttccatcctt gcccgggggc
      841 tgggccgcct cctctcctgt tggtggctgg cggagctgat gcttcatttt atgtacatgc
      901 acgccatcta cagcagcacc tccctcctga gggccgtctc atgttggacc ttaggaggac
      961 tggcgttggc ccaagtgctc ttcttctatg tgaagtactt ggtgctcttt ggtgtcccag
     1021 ctctgctcat gcgcctggat ggactcacgc caccgcccct ccctcgctgt gtgagcacca
     1081 tgttcagttt cacggggatg tggaggtatt ttgacgttgg actgcatgat ttcttggtta
     1141 ggcccagttc ctctccccac aagctcgccg tcgactccat gctgccctgg catcttgttc
     1201 cacctccatg ctgatcctgt ccaacctggt gtttcttggg ggcaatcaag tcgggaaaat
     1261 ctactggaat aggatcttca tacaaggctg gccgtgtgtg accctctctg tcctgggatt
     1321 cctgtactgc tactcccacg tgggcattgc ctgggcccag acatactccg tgaactaatg
     1381 gcgctgggcc ccggtcagcc cttttggctg gcttccaaga caaatattgc ttcaccctga
     1441 ccttgcacct caaggtaacc tccaggggag cagtgcctga tctgctcatc ttttgtcgaa
     1501 gttacctcac tccaagactg gaagcttgag ctctcataac tttgggaact tagagatcat
     1561 cttcccagcc ttcctgttga gtaagctggg gtccaaagca gtaaagtgtc ttgcctagct
     1621 gcacatggtg acgtgatcca gaatccagtc ccaagggccc tttaggttct ttctccttta
     1681 ccaagaatga aatgtaatag acatttcttg actgaggcat agaaattctc attagtgata
     1741 ggcctgtcct cccctgggcg gtatttctga aacatgttgg gtcagtggca ttcgagtgtc
     1801 cccttcccca tgtcctgcag tgtagtctgt agaaccagcc ctgggttcag cttcacactt
     1861 cagctcctca gcagggaggt gacaaagcca caaagccagg gaggtgtttc taattaccgg
     1921 gtcagagaag actgaatgtg ttctgtggca ttgcaaggag tcagtaccca aggagagctg
     1981 ttacttgagc ggatctacat ttggctgctt cttccctaga tttgcagaga agtataaaca
     2041 tggcagttcc cctacctgac agttaactct ttcccaataa agaagcagaa tttaaaaacc
     2101 aaggaatagt gtatcacaga caggtgctat caggcaagtc atagagggta aagatgactt
     2161 cctgtggtct ctcctctctt cacacaagtc tcagcagtca tcttcccact gagcggttta
     2221 cactctgtgg tttaccttgt tttgttttgt ttccaataaa atggagcctt ttgtatca
//
LOCUS       XR_004347123            1332 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hedgehog acyltransferase (HHAT),
            transcript variant X11, misc_RNA.
ACCESSION   XR_004347123
VERSION     XR_004347123.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1332
                     /gene="HHAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744648"
     misc_RNA        1..1332
                     /gene="HHAT"
                     /product="hedgehog acyltransferase, transcript variant
                     X11"
                     /db_xref="GeneID:116744648"
ORIGIN      
        1 gggaagaggg cggcttcccg ggaagtccgt cgccgctgcc gccgccgggt cggagaaact
       61 ctcagcgtgg gccacgggac cctttgtcac aaggagcaat gctgccccga tgggaactgt
      121 ctttttacct gtttgcttcc ctaggcttcc acttctattc tttctacgaa gtttacaaag
      181 tctccagaga acatgaagag gaactggacc aagaatttga cctggacact ggcactttat
      241 ttggaggatt aaagaaggac ccaactgact ttgagtggag cttctggatg gagtggggca
      301 agcagcggct ggtgtggctt ctccttggcc acatgggtgt gtctcaagta gccaacctgc
      361 ttgcaaggaa gcacaaaccc tggatcctca cagcctatgg gatgtgggcc tgctggtgtg
      421 tgctggggac ccaaggcaca gccatggttc ttattcacac caccatctcc ttctgtgttg
      481 cccagttccg gtcgccgttc ctgtcatggc tctgttctct cttcctgctc tctacactga
      541 ggcttcaaga tgtggaggaa gttatgagag ggtggtacca gacggaaaat gagtactact
      601 tgctgcagtt cacactgacc gttcgctgcc tgtactacac cagctccagc ctggagctct
      661 gctggaagca gccgctggct gagcacacct tctgctcctt tccctggatg gtggcctatg
      721 tcttctacta cccagtcttc cacaacgggc ccatcctcag cttcccggag ttcatcgcac
      781 agatgcagcg gcaggagcag ggctcgccca aggccagcct ttccatcctt gcccgggggc
      841 tgggccgcct cctctcctgt tggtggctgg cggagctgat gcttcatttt atgtacatgc
      901 acgccatcta cagcagcacc tccctcctga gggccgtctc atgttggacc ttaggaggac
      961 tggcgttggc ccaagtgctc ttcttctatg tgaagtactt ggtgctcttt ggtgtcccag
     1021 ctctgctcat gcgcctggat ggactcacgc caccgcccct ccctcgctgt gtgagcacca
     1081 tgttcagttt cacggggatg tggaggtatt ttgacgttgg actgcatgat ttcttggtta
     1141 ggcccagttc ctctccccac aagctcgccg tcgactccat gctgccctgg catcttgttc
     1201 cacctccatg ctgatcctgt ccaacctggt gtttcttggg ggcaatcaag tcgggaaaat
     1261 ctactggaat aggatcttca tacaagtggg tgcagaagta gctcagcacc agccgtgcca
     1321 gtgaatacca gc
//
LOCUS       XR_004347124            3356 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744693
            (LOC116744693), ncRNA.
ACCESSION   XR_004347124
VERSION     XR_004347124.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3356
                     /gene="LOC116744693"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744693"
     ncRNA           1..3356
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744693"
                     /product="uncharacterized LOC116744693"
                     /db_xref="GeneID:116744693"
ORIGIN      
        1 atggtaagca tcacacatgc tactaatacc ttgtggaatt aggctgagtg aaaacagggt
       61 tcaagggtcg cgggccagga ctctgtatat ggactcagaa atcacagtta gtttataatg
      121 gagaaggctg gcttggggag gtggagagca gcgcgatcac cgtgtttcag gaggcgtgat
      181 agagtcaaag tccagtcagg acaccggcca ggaatagaag aggacctggg aatttgaaaa
      241 tgattctgga atttccttca aacaagttac ctttcctcca aaggcatttg tgcatctcaa
      301 gaatgcagcg agggatggct gctcttccag caggtccaat atcacgaact ctgcaggaat
      361 cctcactgtg gctaggcacg ttcaggctct cagtcagtcc tttcatgggc aaaagcttat
      421 ttgctctgcg cctacatcac ccagagatta gttaagcaaa cccacaaaca caacggtttg
      481 cgtatgagat atcatgctac ttggagtgac ctaagatttc taaaaatgct cacccccagc
      541 cactctgaat gactacccaa aatgtagtag agtgagagag tcttgtaaaa ctaactggaa
      601 gaacttggga gaggccaaaa ggagggagga gacgtcagcc cataatatgt cctaccaacc
      661 tcccagaatc cttcacgctg gaatccatct tggctgagag aagcacacgc caccaggaag
      721 aaccccaagt cagaccgaat atgggccaag caagatgatt agccagaggc aacctggaat
      781 ctaaccccat taccgtaaaa cctgagactg cgagccacat ggcagagcag tcctcctggg
      841 ttcccttact ctgctgctct ccacccgggc ataaagtctt ttgctttgtc agcagcacgt
      901 gtgtctcctc acgcaattca tttccgagtg ttagacaaga gcccgctctc gggccctggg
      961 aggggtcccc cttcctgcaa cggttggatc atgcgtcttc tgaggtgagg acaggacccc
     1021 aggtctcctg attcccattc catgtgctct ttccacttta ttccacacca tcatactact
     1081 ttttgtgatc cttaggaaag gatgtagttt cctctttcta gcaagaatag acttttgacc
     1141 aaaaagaaaa aggaaagtgc cttgaaaacc tcagcctgtg ttttcatgca acgaggctct
     1201 tttcccatct tagagaaagg agatttcacc acaggttgcc cctttgtggc agggaggaga
     1261 atcaggccct ctgtggagcc attaactgcc tgctatattg tgattgatgg atatcaattt
     1321 ccgtgtccat atctctgctc tttgacgtca tccatttgta gacaagcctc caaacgtgta
     1381 ggttggctga gggagggaag acatttctca gtccagcccg ctgactaaac agccattaga
     1441 gtctctagac caagatgatt ctgtttctca gagctttttc tcaggttgct accctcagcc
     1501 cggtttggag gtactgcagg ctcattgact ttcctcccca aagtaaatga aagccctcct
     1561 gcatggtgag ctgggaaagg ccagcacctg ctctgacttg ctattcttct ctctggcacc
     1621 ctggggagcg ctgctctgcg aaacaggagc tggtctgtgc ctgctgccaa gcagggaacc
     1681 ctgattagga taatgcccag caggtttctg ctttctcttc tcctttccca cccttaaaca
     1741 aactagggga ttgctgttgc tatgggccaa aataacaaga cctgagagct tttaattgtt
     1801 atttcaaaga cccgagccat catccatggg aaggaaagct aaagagaccg tgaaggcgat
     1861 tgtaacctac tgaacttaat gaatgagaac gactttcttc aaaggacgaa caaatttatg
     1921 tttggaatga aacattcttt gttttagcca atgtcgacca cagtaacgca gtcaaagtgg
     1981 atgatcttgg gtgcaggtgg gaactgcttt ggataggatt tgaagttgga ggtaggcagg
     2041 gcttcagttc tttcaggatc tttcattttg tttgttagta cagttgagag agctacttct
     2101 cctcccgtct tcctctccct tctctttccc ttccattcct cttgcgtcct ctcctctttc
     2161 tcctgaagct gaaatggatc ctgaattgga gggtggagga caactcctac agttctcatc
     2221 atcctcccat caagtcctgc ctaaaggcaa cttgggtcgt tcctggacaa aatactcact
     2281 cacaagatga gacgggatct acacaagttt gaatgtgtaa tgtaccaagc taagagcttt
     2341 atatgaaata tctcattgaa atctttcagt caccctagga ggaaacaagt gagattttga
     2401 aatgcttgag tggtgtgatc agtagacagt agtgggaaag aatttccctg aaactcgact
     2461 tgcaatcaaa ataaggaagg aagatctgaa agaactgaag tatttcagct aatcaggata
     2521 tggcactttc cgacatctgg atgtccaaac aagtgttttg aattcaatac tattaacatg
     2581 tgtcacttta atgaatattt tcccttggag ccaatggggt agttacattt ttggcaatca
     2641 cctcgtggtc tgctgcttac attacctgac ccacaggcca ttttccttgt gttggctgtg
     2701 ggaaagaaaa caaagtggaa aatatctcag aacctggaaa actgtattga aaatgcaact
     2761 catcttttaa ttgaaccact tcaaatagaa gctctctaag gacgatttgc tcaccgttct
     2821 tgtgacatca tatgtaacaa aaagaatcag ttctctttgt atcaaaaaga tggggaaaaa
     2881 atcccacaag atgagatggg attttttttt ttttaagcct gaaatagaag gtcaggtctc
     2941 tgaatatgtg agtacctgtg tatatatgag tggatatgca tatgtgtatg cgtataggtg
     3001 agtatgtttc ccattagaca ttagctcatt gaggtagttc atcagaatgc tttcaaaggc
     3061 atggactttg gaatcacagg ccaaaggtta catcattctc tagctgaaca atctctgaca
     3121 gattgcttcg tcttccttgg cctcagtttc ctcatctgtg aatggaaata cgagcagcac
     3181 ccatctccta agggtgccat gaaataggac ctgggatgtg atttgcacag tgcctgatat
     3241 aaaaagctct caatcacaac cttgggtatc attgattgga gagctctccc ctgcacagct
     3301 cctggaggag ttcgtggttt tgttgttttg tttttaaata aagtgggtgt tccatc
//
LOCUS       XM_032614784            2060 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ladinin 1 (LAD1), transcript variant X1,
            mRNA.
ACCESSION   XM_032614784
VERSION     XM_032614784.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2060
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2060
                     /gene="LAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744700"
     CDS             92..1588
                     /gene="LAD1"
                     /codon_start=1
                     /product="ladinin-1 isoform X1"
                     /protein_id="XP_032470675.1"
                     /db_xref="GeneID:116744700"
                     /translation="MSVSRKNWATLSSLARQWTLEDEEEQERERRRRHRSLSSTVDDE
                     VAQPAQDGDAAAPERLPSVEEMEVSPRPPLDSSGEDVWAVLRARQERRQRQREAEVAQ
                     APVREQLEEEDGAGTGQAGQLPPAPEKELGLLLRRRLSREQRSSWVQEEESLVGREPG
                     SSRKGGSEKPSAPEKILAPEKSLDSKEVSTSGKTASPETVSVSQKIAVLEKRTISGKT
                     VLEKKSVLEKLPSPGKTSDSEKRLTSEKAAVFEKTPAPETRLAPARAAAPGQPRAQEL
                     PASAQSPSTPKGQGRAGPKQEPPSSAGLWGQGAERPAGTCHLPPITLQMKIPSKEDKE
                     DTPSPTQATYSSSLKRSSPRTISFRMSPRRDHSEAALTRSCSVRIPASSFTLGQKLER
                     YHTAVQRSESVRSPGPSRAEFLVAPVDVASKRHLFEKELVGQGREGAASGRKENLRLS
                     GVVTSRLNLWISKTQESGDGDPQEVQKESAAARRIQWRKKVDSLDAKV"
     misc_feature    <533..1366
                     /gene="LAD1"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
ORIGIN      
        1 tgagcctacc tgcgccggcg gcgggcgggt tgcgcgcggg gaggcgccga gcggacacga
       61 cgcacgcggc gggcgcccgg gctccggcgg catgtcagtc agcaggaaga actgggccac
      121 gctgtccagc ctggccaggc agtggaccct ggaggacgaa gaggaacagg agagggaacg
      181 gcggcggcga caccggagcc tgagctccac cgtggacgac gaggtggccc agccggccca
      241 ggacggagac gcggcggccc cagagagact gccgagcgtg gaggaaatgg aggtctcccc
      301 ccgaccaccc ctagactcca gcggtgagga cgtgtgggcc gtcctcaggg cacggcagga
      361 gcggaggcag aggcagcggg aggcggaggt cgcacaggcc cccgtccggg agcagctgga
      421 ggaggaggat ggcgcgggca ctgggcaggc cgggcagctg cccccagcgc ccgagaagga
      481 gctggggctg ctgcttcgcc ggagactgag ccgggagcag cggagctcct gggtccagga
      541 ggaggagagc ttggtgggca gggagccggg aagcagcagg aaggggggct cagagaagcc
      601 ctctgcccca gagaagatat tagcgcccga aaagagcctg gactccaagg aagtctccac
      661 ctccgggaag actgccagcc ctgagacagt gtctgtgtcc cagaagattg cggtgttgga
      721 gaaaagaacc atctcgggaa agacggttct ggaaaaaaaa agtgtcttgg agaagctgcc
      781 gtccccaggg aagacgtcgg actcagaaaa gagactgacg tctgagaaag cagcagtctt
      841 tgagaagacc ccggcccctg agacacggct ggccccagcg agggcggcgg ccccagggca
      901 gccccgggcc caggagctgc cagcctctgc gcagagcccg tccaccccca aggggcaggg
      961 gagggccggc cccaagcagg agcccccatc ctcggcgggg ctgtgggggc agggggcaga
     1021 gcgtccggct gggacttgcc acctcccacc catcactctg cagatgaaaa tccccagcaa
     1081 ggaggacaag gaggacacac cctcgcccac ccaggccacc tacagcagct ccctgaagcg
     1141 ctccagcccc aggaccatct cctttcggat gagcccccgg agagaccact cagaggcggc
     1201 cttaacccgc agctgcagcg tgaggatccc agccagctcc ttcacactgg gccagaagct
     1261 ggagagatac cacacagccg tacagagatc agagtcagtc aggtctccgg gcccctcccg
     1321 cgctgagttc ttggtggctc ccgtggacgt cgccagcaag cgccacctct ttgagaagga
     1381 gctggtgggc cagggccggg aaggagcagc ctccggccgg aaggagaatt tgcggctctc
     1441 gggggttgtg acatcgaggc tcaacctgtg gatcagcaag acgcaggagt caggagatgg
     1501 ggacccgcag gaggtgcaga aggagtcggc agctgccagg aggatccagt ggaggaagaa
     1561 agtggactcc ctggatgcca aggtgtgaga agccttgtct catcaccccg ctccctttct
     1621 gccttggacc tgggaccagg aacgtcgggg gcgctcagcc agctccttct ctgcccagcc
     1681 tctggggcag gtgtgcctgg cctcttgtcc tgctgtgggc acagcagatc ctgggcccca
     1741 gcgccggcct aggcacagca cgactcttgt ccgcacctca ggcctcggcg tcctgtccgg
     1801 agacggcttt tcctgctggc cctttccagg gacaggggca ccgtcctgca agaagccccg
     1861 ggtccctgcc tggtctgagc cccgcaggtg tctccgtgta cctctcagag gccggccagg
     1921 ctggaagcat cgcactgtct tcccgggccc cgtcccctgc tttgttctcc ctcacacccc
     1981 cacctgctgc tctggccaag ccatcgtgtg ctcccctccc gctgttctca ggaaagaggt
     2041 gataaactca ttcagtctca
//
LOCUS       XM_032614792            2057 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ladinin 1 (LAD1), transcript variant X2,
            mRNA.
ACCESSION   XM_032614792
VERSION     XM_032614792.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2057
                     /gene="LAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744700"
     CDS             92..1585
                     /gene="LAD1"
                     /codon_start=1
                     /product="ladinin-1 isoform X2"
                     /protein_id="XP_032470683.1"
                     /db_xref="GeneID:116744700"
                     /translation="MSVSRKNWATLSSLARQWTLEDEEEQERERRRRHRSLSSTVDDE
                     VAQPAQDGDAAAPERLPSVEEMEVSPRPPLDSSGEDVWAVLRARQERRQRQREAEVAQ
                     APVREQLEEEDGAGTGQAGQLPPAPEKELGLLLRRRLSREQRSSWVQEEESLVGREPG
                     SSRKGGSEKPSAPEKILAPEKSLDSKEVSTSGKTASPETVSVSQKIAVLEKRTISGKT
                     VLEKKSVLEKLPSPGKTSDSEKRLTSEKAAVFEKTPAPETRLAPARAAAPGQPRAQEL
                     PASAQSPSTPKGQGRAGPKQEPPSSAGLWGQGAERPAGTCHLPPITLQMKIPSKEDKE
                     DTPSPTQATYSSSLKRSSPRTISFRMSPRRDHSEAALTRSSVRIPASSFTLGQKLERY
                     HTAVQRSESVRSPGPSRAEFLVAPVDVASKRHLFEKELVGQGREGAASGRKENLRLSG
                     VVTSRLNLWISKTQESGDGDPQEVQKESAAARRIQWRKKVDSLDAKV"
     misc_feature    <533..1363
                     /gene="LAD1"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
ORIGIN      
        1 tgagcctacc tgcgccggcg gcgggcgggt tgcgcgcggg gaggcgccga gcggacacga
       61 cgcacgcggc gggcgcccgg gctccggcgg catgtcagtc agcaggaaga actgggccac
      121 gctgtccagc ctggccaggc agtggaccct ggaggacgaa gaggaacagg agagggaacg
      181 gcggcggcga caccggagcc tgagctccac cgtggacgac gaggtggccc agccggccca
      241 ggacggagac gcggcggccc cagagagact gccgagcgtg gaggaaatgg aggtctcccc
      301 ccgaccaccc ctagactcca gcggtgagga cgtgtgggcc gtcctcaggg cacggcagga
      361 gcggaggcag aggcagcggg aggcggaggt cgcacaggcc cccgtccggg agcagctgga
      421 ggaggaggat ggcgcgggca ctgggcaggc cgggcagctg cccccagcgc ccgagaagga
      481 gctggggctg ctgcttcgcc ggagactgag ccgggagcag cggagctcct gggtccagga
      541 ggaggagagc ttggtgggca gggagccggg aagcagcagg aaggggggct cagagaagcc
      601 ctctgcccca gagaagatat tagcgcccga aaagagcctg gactccaagg aagtctccac
      661 ctccgggaag actgccagcc ctgagacagt gtctgtgtcc cagaagattg cggtgttgga
      721 gaaaagaacc atctcgggaa agacggttct ggaaaaaaaa agtgtcttgg agaagctgcc
      781 gtccccaggg aagacgtcgg actcagaaaa gagactgacg tctgagaaag cagcagtctt
      841 tgagaagacc ccggcccctg agacacggct ggccccagcg agggcggcgg ccccagggca
      901 gccccgggcc caggagctgc cagcctctgc gcagagcccg tccaccccca aggggcaggg
      961 gagggccggc cccaagcagg agcccccatc ctcggcgggg ctgtgggggc agggggcaga
     1021 gcgtccggct gggacttgcc acctcccacc catcactctg cagatgaaaa tccccagcaa
     1081 ggaggacaag gaggacacac cctcgcccac ccaggccacc tacagcagct ccctgaagcg
     1141 ctccagcccc aggaccatct cctttcggat gagcccccgg agagaccact cagaggcggc
     1201 cttaacccgc agcagcgtga ggatcccagc cagctccttc acactgggcc agaagctgga
     1261 gagataccac acagccgtac agagatcaga gtcagtcagg tctccgggcc cctcccgcgc
     1321 tgagttcttg gtggctcccg tggacgtcgc cagcaagcgc cacctctttg agaaggagct
     1381 ggtgggccag ggccgggaag gagcagcctc cggccggaag gagaatttgc ggctctcggg
     1441 ggttgtgaca tcgaggctca acctgtggat cagcaagacg caggagtcag gagatgggga
     1501 cccgcaggag gtgcagaagg agtcggcagc tgccaggagg atccagtgga ggaagaaagt
     1561 ggactccctg gatgccaagg tgtgagaagc cttgtctcat caccccgctc cctttctgcc
     1621 ttggacctgg gaccaggaac gtcgggggcg ctcagccagc tccttctctg cccagcctct
     1681 ggggcaggtg tgcctggcct cttgtcctgc tgtgggcaca gcagatcctg ggccccagcg
     1741 ccggcctagg cacagcacga ctcttgtccg cacctcaggc ctcggcgtcc tgtccggaga
     1801 cggcttttcc tgctggccct ttccagggac aggggcaccg tcctgcaaga agccccgggt
     1861 ccctgcctgg tctgagcccc gcaggtgtct ccgtgtacct ctcagaggcc ggccaggctg
     1921 gaagcatcgc actgtcttcc cgggccccgt cccctgcttt gttctccctc acacccccac
     1981 ctgctgctct ggccaagcca tcgtgtgctc ccctcccgct gttctcagga aagaggtgat
     2041 aaactcattc agtctca
//
LOCUS       XM_032614798            2021 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ladinin 1 (LAD1), transcript variant X3,
            mRNA.
ACCESSION   XM_032614798
VERSION     XM_032614798.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2021
                     /gene="LAD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744700"
     CDS             248..1549
                     /gene="LAD1"
                     /codon_start=1
                     /product="ladinin-1 isoform X3"
                     /protein_id="XP_032470689.1"
                     /db_xref="GeneID:116744700"
                     /translation="MEVSPRPPLDSSGEDVWAVLRARQERRQRQREAEVAQAPVREQL
                     EEEDGAGTGQAGQLPPAPEKELGLLLRRRLSREQRSSWVQEEESLVGREPGSSRKGGS
                     EKPSAPEKILAPEKSLDSKEVSTSGKTASPETVSVSQKIAVLEKRTISGKTVLEKKSV
                     LEKLPSPGKTSDSEKRLTSEKAAVFEKTPAPETRLAPARAAAPGQPRAQELPASAQSP
                     STPKGQGRAGPKQEPPSSAGLWGQGAERPAGTCHLPPITLQMKIPSKEDKEDTPSPTQ
                     ATYSSSLKRSSPRTISFRMSPRRDHSEAALTRSCSVRIPASSFTLGQKLERYHTAVQR
                     SESVRSPGPSRAEFLVAPVDVASKRHLFEKELVGQGREGAASGRKENLRLSGVVTSRL
                     NLWISKTQESGDGDPQEVQKESAAARRIQWRKKVDSLDAKV"
     misc_feature    <494..1327
                     /gene="LAD1"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
ORIGIN      
        1 cttctgcgac gcgcctaccc acaggccaat ccggggcagc aggcggtgcg cggctgcgcg
       61 ggacgcaggc cgggggggat aagaggccag cctggccagg cagtggaccc tggaggacga
      121 agaggaacag gagagggaac ggcggcggcg acaccggagc ctgagctcca ccgtggacga
      181 cgaggtggcc cagccggccc aggacggaga cgcggcggcc ccagagagac tgccgagcgt
      241 ggaggaaatg gaggtctccc cccgaccacc cctagactcc agcggtgagg acgtgtgggc
      301 cgtcctcagg gcacggcagg agcggaggca gaggcagcgg gaggcggagg tcgcacaggc
      361 ccccgtccgg gagcagctgg aggaggagga tggcgcgggc actgggcagg ccgggcagct
      421 gcccccagcg cccgagaagg agctggggct gctgcttcgc cggagactga gccgggagca
      481 gcggagctcc tgggtccagg aggaggagag cttggtgggc agggagccgg gaagcagcag
      541 gaaggggggc tcagagaagc cctctgcccc agagaagata ttagcgcccg aaaagagcct
      601 ggactccaag gaagtctcca cctccgggaa gactgccagc cctgagacag tgtctgtgtc
      661 ccagaagatt gcggtgttgg agaaaagaac catctcggga aagacggttc tggaaaaaaa
      721 aagtgtcttg gagaagctgc cgtccccagg gaagacgtcg gactcagaaa agagactgac
      781 gtctgagaaa gcagcagtct ttgagaagac cccggcccct gagacacggc tggccccagc
      841 gagggcggcg gccccagggc agccccgggc ccaggagctg ccagcctctg cgcagagccc
      901 gtccaccccc aaggggcagg ggagggccgg ccccaagcag gagcccccat cctcggcggg
      961 gctgtggggg cagggggcag agcgtccggc tgggacttgc cacctcccac ccatcactct
     1021 gcagatgaaa atccccagca aggaggacaa ggaggacaca ccctcgccca cccaggccac
     1081 ctacagcagc tccctgaagc gctccagccc caggaccatc tcctttcgga tgagcccccg
     1141 gagagaccac tcagaggcgg ccttaacccg cagctgcagc gtgaggatcc cagccagctc
     1201 cttcacactg ggccagaagc tggagagata ccacacagcc gtacagagat cagagtcagt
     1261 caggtctccg ggcccctccc gcgctgagtt cttggtggct cccgtggacg tcgccagcaa
     1321 gcgccacctc tttgagaagg agctggtggg ccagggccgg gaaggagcag cctccggccg
     1381 gaaggagaat ttgcggctct cgggggttgt gacatcgagg ctcaacctgt ggatcagcaa
     1441 gacgcaggag tcaggagatg gggacccgca ggaggtgcag aaggagtcgg cagctgccag
     1501 gaggatccag tggaggaaga aagtggactc cctggatgcc aaggtgtgag aagccttgtc
     1561 tcatcacccc gctccctttc tgccttggac ctgggaccag gaacgtcggg ggcgctcagc
     1621 cagctccttc tctgcccagc ctctggggca ggtgtgcctg gcctcttgtc ctgctgtggg
     1681 cacagcagat cctgggcccc agcgccggcc taggcacagc acgactcttg tccgcacctc
     1741 aggcctcggc gtcctgtccg gagacggctt ttcctgctgg ccctttccag ggacaggggc
     1801 accgtcctgc aagaagcccc gggtccctgc ctggtctgag ccccgcaggt gtctccgtgt
     1861 acctctcaga ggccggccag gctggaagca tcgcactgtc ttcccgggcc ccgtcccctg
     1921 ctttgttctc cctcacaccc ccacctgctg ctctggccaa gccatcgtgt gctcccctcc
     1981 cgctgttctc aggaaagagg tgataaactc attcagtctc a
//
LOCUS       XM_032614804            3215 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus olfactomedin like 2B (OLFML2B),
            transcript variant X1, mRNA.
ACCESSION   XM_032614804
VERSION     XM_032614804.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3215
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3215
                     /gene="OLFML2B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 5 long SRA reads, 11
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744720"
     CDS             467..2731
                     /gene="OLFML2B"
                     /codon_start=1
                     /product="olfactomedin-like protein 2B isoform X1"
                     /protein_id="XP_032470695.1"
                     /db_xref="GeneID:116744720"
                     /translation="MAKSLRLALCFALVMALGWGYSTPPTGTTEPPDVQTVAPTEDET
                     LQNEADNQENVLSQLLGDYDKVKAVSEGSDCQCKCVVRPLGRDACQRVNKGTSRKEDF
                     YTVETITSGSSCKCACVAPPSALNPCEGDFRLQKLREADSRDLKLSTIIDMLEGAFYG
                     LDLLKLHSVTTKLVGRVDKLEEEVSKNLTKENERIEEDVKEIRTEMNKRGKENSSSNI
                     LDSMPDIHSALQRDTAAAYTHPEYEERFLQEETVSQQINSIKLLQTRPLAPPEVVKPQ
                     WPLQRQVHLRGRPASKPTVIRGITYYKAKDPEEENDIEEHQDEFFSGEHGMDLLIEDQ
                     LLRHNLLLTSATRRPVATHHNAAVTTDAGTQTTALLSAQPQASTSAASIPDPTLSASV
                     EKFSTPLQTTSVFPEPTGEAFLKPFTQVPATTVAHTATQRPPASAPPSVAPEDAFVEA
                     MHTAPVPPPPVRTDSLGKDATAGQGTAPLSPTLSPGEEDDIRNVIGRCKDTLSTITGP
                     TTQNTYGRNEGAWMKDPLAKDERIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYS
                     WIGTGHVVYNGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDV
                     DFAVDENGLWLIYPALDDEGFSQEVIVLSKLNAVDLSTHKETTWRTGLRRNFYGNCFV
                     ICGVLYAVDSYNQRNANISYAFDTHTNTQIIPRLLFENEYSYTTQIDYNPKDRLLYAW
                     DNGHQVTYHVIFAY"
     misc_feature    <1121..>1882
                     /gene="OLFML2B"
                     /note="Cell division protein DamX, binds to the septal
                     ring, contains C-terminal SPOR domain [Cell cycle control,
                     cell division, chromosome partitioning]; Region: DamX;
                     COG3266"
                     /db_xref="CDD:442497"
     misc_feature    <1580..>1945
                     /gene="OLFML2B"
                     /note="Atrophin-1 family; Region: Atrophin-1; pfam03154"
                     /db_xref="CDD:460830"
     misc_feature    1970..2722
                     /gene="OLFML2B"
                     /note="Olfactomedin-like domain; Region: OLF; pfam02191"
                     /db_xref="CDD:460482"
ORIGIN      
        1 cgctccgcgg cgcagtcgcc caacagccct cgcagctgcc cgccccacac ccccaccggg
       61 tccccttgtg cccccaggct cccagccgcc cgcaccctcg cgccccgccc cgcccgcctc
      121 tgccaggacc ccttccttcc acctgagccc tctccagagg acggcgcgct cggcgagcct
      181 taccacctcc accttccccg tcacctcctc ctatcctgcg ccccactctc taccggggcc
      241 gcacggtcgg ggctgatcgc gttgggaagg agatgaccag ggtctctagg gagcatcttc
      301 ccgccccgct cagccgcacc cagctttgga aggcgctgtg agcagccact ctcgggctcc
      361 agccagacac cctctcgcct tagtccttgc cgagacaccc cccctccacc ccaccggacc
      421 ccagccattc tccgaagggg ccgagctccc tcttgtcgcg tccctcatgg ccaagtcttt
      481 gcgactagct ctctgcttcg ctctggttat ggctctgggc tgggggtaca gcactccccc
      541 gactgggacg accgagcccc cagatgtgca gacggtggcg cccacggagg acgagacttt
      601 gcaaaacgaa gcggacaacc aggagaacgt tttatctcag ttgctcggag actatgacaa
      661 agttaaggcc gtgtctgagg gctcggactg tcagtgcaag tgtgtagtgc gacccctggg
      721 ccgagacgcc tgccaaaggg tcaacaaggg gacctccagg aaggaagact tctacactgt
      781 ggaaaccatc acctcaggct catcctgcaa gtgtgcctgt gttgcaccgc catccgccct
      841 caatccctgt gagggagact tcaggctcca gaagcttcgg gaggcagaca gccgggactt
      901 gaagctctcc accatcatag acatgctgga aggagctttc tatggcctgg atctcctgaa
      961 actgcattcg gttaccacca aactggtggg gagagtggac aaactagagg aggaagtttc
     1021 taaaaacctc accaaggaaa atgaacgaat cgaagaggac gtgaaagaaa ttcgaactga
     1081 gatgaacaag cgaggcaaag agaacagctc cagtaacatc ctagacagca tgccggacat
     1141 ccactcggcc ctgcagaggg acacggctgc agcctacacc caccccgagt atgaagagag
     1201 gtttctgcag gaagaaaccg tgtcccagca gatcaactcc atcaagctcc tgcagacgcg
     1261 gccactggct ccgccagagg tggtgaagcc tcagtggccc ctgcagaggc aggtccacct
     1321 gaggggccgg ccggcctcca agcccaccgt cattcggggc atcacctact acaaagccaa
     1381 ggaccctgag gaggagaatg acatcgaaga gcatcaagac gagtttttca gcggtgaaca
     1441 cggaatggat ttgctgattg aagatcagct tctgagacac aacctcctgc tgaccagtgc
     1501 cacccggagg ccagtagcca cccatcacaa tgctgctgtg acaactgatg ctggcactca
     1561 gaccacagcc ctgctttctg cacagccgca ggcctcgacc tcagctgcca gcatccctga
     1621 ccctactctc tctgcctcag ttgaaaaatt ctcaacacca ctccagacca cctcagtgtt
     1681 tcccgaaccc accggggagg cattccttaa accttttact caggtaccag ccacgaccgt
     1741 ggcccacaca gccacccagc gacctccagc ctcagcgcct ccatcagtgg ctcccgagga
     1801 tgcatttgta gaggcgatgc acacagcccc ggtgcctccc ccaccagtca ggacagactc
     1861 actggggaaa gatgccactg ctgggcaggg cacagccccc ctcagcccca ccctgagccc
     1921 cggggaagaa gatgacatac ggaatgtcat aggaaggtgc aaggacaccc tctccacaat
     1981 cacggggcca accacgcaga acacatacgg gcggaacgaa ggggcctgga tgaaggaccc
     2041 cctggccaaa gatgagcgga tttacgtaac caattattac tatggcaaca ccctggtaga
     2101 gttccggaac ctggagaact tcaaacaagg tcgctggagc aattcctaca agctccccta
     2161 cagctggatc ggcacgggcc acgtggtgta caatggtgcc ttctactaca accgggcctt
     2221 cacccgtaac atcatcaagt atgacctgaa gcagcgctat gtggctgcct gggccatgct
     2281 ccatgacgtg gcctatgagg aggccacgcc ctggaggtgg cagggccact cggacgtgga
     2341 ctttgctgtg gatgagaatg gcctgtggct catctacccg gccctggatg atgagggctt
     2401 cagccaggag gtcatcgtcc tgagcaagct caacgccgtg gacctgagca cacacaagga
     2461 gaccacgtgg cgcacggggc tccggcggaa cttctacggc aactgctttg tcatctgtgg
     2521 ggtgctgtac gccgtggaca gctacaacca gcgcaatgcc aacatctcct acgcctttga
     2581 cacccacacc aacacgcaga tcatccccag gctgctgttc gagaatgagt attcctacac
     2641 cacccagata gactacaacc ccaaggaccg cctgctctac gcctgggaca atggccacca
     2701 ggtcacctac catgtcatct ttgcctactg acactcctgt ccccagaagc agaagtgcag
     2761 aggggctact ggcaccttgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtatgt
     2821 gggtgtgtgt ggtttaaaaa atatatatta ttttgtataa tattgccaat gtaaaatgac
     2881 aatttgggtc tatttttttt atacggattg tagatcaatc catatgtgta tgtgctggtc
     2941 tcatcctcca tggtttatat ttttgtgcga atgaacttct ccttttgacc agtaaccacc
     3001 ttccttcaaa ccctcaaccc cctccagctc ccacatctcg atctgagaag atttcttcat
     3061 ctgggtcttg caggcagctg gcaccggaag caggagtgaa ggaggcaaga aagaagtgct
     3121 aaggggatgg aaaaactgtt ttatgtgtta gagaagtttt tctaaaaacc cagaaataaa
     3181 tgcttttttt ttaataaaga agaaatttaa aatca
//
LOCUS       XM_032614808            3018 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus olfactomedin like 2B (OLFML2B),
            transcript variant X2, mRNA.
ACCESSION   XM_032614808
VERSION     XM_032614808.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3018
                     /gene="OLFML2B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744720"
     CDS             330..2591
                     /gene="OLFML2B"
                     /codon_start=1
                     /product="olfactomedin-like protein 2B isoform X2"
                     /protein_id="XP_032470699.1"
                     /db_xref="GeneID:116744720"
                     /translation="MAKSLRLALCFALVMALGWGYSTPPTGTTEPPDVQTVAPTEDET
                     LQNEADNQENVLSQLLGDYDKVKAVSEGSDCQCKCVVRPLGRDACQRVNKGTSRKEDF
                     YTVETITSGSSCKCACVAPPSALNPCEGDFRLQKLREADSRDLKLSTIIDMLEGAFYG
                     LDLLKLHSVTTKLVGRVDKLEEEVSKNLTKENERIEEDVKEIRTEMNKRGKENSSSNI
                     LDSMPDIHSALQRDTAAAYTHPEYEERFLQEETVSQQINSIKLLQTRPLAPPEVVKPQ
                     WPLQRQVHLRGRPASKPTVIRGITYYKAKDPEEENDIEEHHEFFSGEHGMDLLIEDQL
                     LRHNLLLTSATRRPVATHHNAAVTTDAGTQTTALLSAQPQASTSAASIPDPTLSASVE
                     KFSTPLQTTSVFPEPTGEAFLKPFTQVPATTVAHTATQRPPASAPPSVAPEDAFVEAM
                     HTAPVPPPPVRTDSLGKDATAGQGTAPLSPTLSPGEEDDIRNVIGRCKDTLSTITGPT
                     TQNTYGRNEGAWMKDPLAKDERIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSW
                     IGTGHVVYNGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVD
                     FAVDENGLWLIYPALDDEGFSQEVIVLSKLNAVDLSTHKETTWRTGLRRNFYGNCFVI
                     CGVLYAVDSYNQRNANISYAFDTHTNTQIIPRLLFENEYSYTTQIDYNPKDRLLYAWD
                     NGHQVTYHVIFAY"
     misc_feature    <1044..>1766
                     /gene="OLFML2B"
                     /note="Cell division protein DamX, binds to the septal
                     ring, contains C-terminal SPOR domain [Cell cycle control,
                     cell division, chromosome partitioning]; Region: DamX;
                     COG3266"
                     /db_xref="CDD:442497"
     misc_feature    <1440..>1805
                     /gene="OLFML2B"
                     /note="Atrophin-1 family; Region: Atrophin-1; pfam03154"
                     /db_xref="CDD:460830"
     misc_feature    1830..2582
                     /gene="OLFML2B"
                     /note="Olfactomedin-like domain; Region: OLF; pfam02191"
                     /db_xref="CDD:460482"
ORIGIN      
        1 tccacctgag ccctctccag aggacggcgc gctcggcgag ccttaccacc tccaccttcc
       61 ccgtcacctc ctcctatcct gcgccccact ctctaccggg gccgcacggt cggggctgat
      121 cgcgttggga aggagatgac cagggtctct agggagcatc ttcccgcccc gctcagccgc
      181 acccagcttt ggaaggcgct gtgagcagcc actctcgggc tccagccaga caccctctcg
      241 ccttagtcct tgccgagaca ccccccctcc accccaccgg accccagcca ttctccgaag
      301 gggccgagct ccctcttgtc gcgtccctca tggccaagtc tttgcgacta gctctctgct
      361 tcgctctggt tatggctctg ggctgggggt acagcactcc cccgactggg acgaccgagc
      421 ccccagatgt gcagacggtg gcgcccacgg aggacgagac tttgcaaaac gaagcggaca
      481 accaggagaa cgttttatct cagttgctcg gagactatga caaagttaag gccgtgtctg
      541 agggctcgga ctgtcagtgc aagtgtgtag tgcgacccct gggccgagac gcctgccaaa
      601 gggtcaacaa ggggacctcc aggaaggaag acttctacac tgtggaaacc atcacctcag
      661 gctcatcctg caagtgtgcc tgtgttgcac cgccatccgc cctcaatccc tgtgagggag
      721 acttcaggct ccagaagctt cgggaggcag acagccggga cttgaagctc tccaccatca
      781 tagacatgct ggaaggagct ttctatggcc tggatctcct gaaactgcat tcggttacca
      841 ccaaactggt ggggagagtg gacaaactag aggaggaagt ttctaaaaac ctcaccaagg
      901 aaaatgaacg aatcgaagag gacgtgaaag aaattcgaac tgagatgaac aagcgaggca
      961 aagagaacag ctccagtaac atcctagaca gcatgccgga catccactcg gccctgcaga
     1021 gggacacggc tgcagcctac acccaccccg agtatgaaga gaggtttctg caggaagaaa
     1081 ccgtgtccca gcagatcaac tccatcaagc tcctgcagac gcggccactg gctccgccag
     1141 aggtggtgaa gcctcagtgg cccctgcaga ggcaggtcca cctgaggggc cggccggcct
     1201 ccaagcccac cgtcattcgg ggcatcacct actacaaagc caaggaccct gaggaggaga
     1261 atgacatcga agagcatcac gagtttttca gcggtgaaca cggaatggat ttgctgattg
     1321 aagatcagct tctgagacac aacctcctgc tgaccagtgc cacccggagg ccagtagcca
     1381 cccatcacaa tgctgctgtg acaactgatg ctggcactca gaccacagcc ctgctttctg
     1441 cacagccgca ggcctcgacc tcagctgcca gcatccctga ccctactctc tctgcctcag
     1501 ttgaaaaatt ctcaacacca ctccagacca cctcagtgtt tcccgaaccc accggggagg
     1561 cattccttaa accttttact caggtaccag ccacgaccgt ggcccacaca gccacccagc
     1621 gacctccagc ctcagcgcct ccatcagtgg ctcccgagga tgcatttgta gaggcgatgc
     1681 acacagcccc ggtgcctccc ccaccagtca ggacagactc actggggaaa gatgccactg
     1741 ctgggcaggg cacagccccc ctcagcccca ccctgagccc cggggaagaa gatgacatac
     1801 ggaatgtcat aggaaggtgc aaggacaccc tctccacaat cacggggcca accacgcaga
     1861 acacatacgg gcggaacgaa ggggcctgga tgaaggaccc cctggccaaa gatgagcgga
     1921 tttacgtaac caattattac tatggcaaca ccctggtaga gttccggaac ctggagaact
     1981 tcaaacaagg tcgctggagc aattcctaca agctccccta cagctggatc ggcacgggcc
     2041 acgtggtgta caatggtgcc ttctactaca accgggcctt cacccgtaac atcatcaagt
     2101 atgacctgaa gcagcgctat gtggctgcct gggccatgct ccatgacgtg gcctatgagg
     2161 aggccacgcc ctggaggtgg cagggccact cggacgtgga ctttgctgtg gatgagaatg
     2221 gcctgtggct catctacccg gccctggatg atgagggctt cagccaggag gtcatcgtcc
     2281 tgagcaagct caacgccgtg gacctgagca cacacaagga gaccacgtgg cgcacggggc
     2341 tccggcggaa cttctacggc aactgctttg tcatctgtgg ggtgctgtac gccgtggaca
     2401 gctacaacca gcgcaatgcc aacatctcct acgcctttga cacccacacc aacacgcaga
     2461 tcatccccag gctgctgttc gagaatgagt attcctacac cacccagata gactacaacc
     2521 ccaaggaccg cctgctctac gcctgggaca atggccacca ggtcacctac catgtcatct
     2581 ttgcctactg acactcctgt ccccagaagc agaagtgcag aggggctact ggcaccttgt
     2641 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtatgt gggtgtgtgt ggtttaaaaa
     2701 atatatatta ttttgtataa tattgccaat gtaaaatgac aatttgggtc tatttttttt
     2761 atacggattg tagatcaatc catatgtgta tgtgctggtc tcatcctcca tggtttatat
     2821 ttttgtgcga atgaacttct ccttttgacc agtaaccacc ttccttcaaa ccctcaaccc
     2881 cctccagctc ccacatctcg atctgagaag atttcttcat ctgggtcttg caggcagctg
     2941 gcaccggaag caggagtgaa ggaggcaaga aagaagtgct aaggggatgg aaaaactgtt
     3001 ttatgtgtta gagaagtt
//
LOCUS       XM_032614813            3103 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vascular cell adhesion molecule 1
            (VCAM1), mRNA.
ACCESSION   XM_032614813
VERSION     XM_032614813.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3103
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3103
                     /gene="VCAM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744736"
     CDS             128..2347
                     /gene="VCAM1"
                     /codon_start=1
                     /product="vascular cell adhesion protein 1"
                     /protein_id="XP_032470704.1"
                     /db_xref="GeneID:116744736"
                     /translation="MPRKMVVIFGASNILWMVFAVSQAFKIDIFPESKIIAQIGDSIS
                     LTCSTTGCESPSFSWRTQIDSPLNGKVRNEGTKSTLTMDPVSLGNEHYYLCTVICESQ
                     KLERGIPVEIYSFPKDPEIHLSGPLEVGKPVTVTCLVPDVYPYERLEIELLKGNRSVK
                     TQDFLEVSEMKSQETKSVEVTFTPIDEDIGKALVCQATLHINEIDSQPQVRKTTKKLQ
                     VYISPKDTVISVNPSTSLQEGDSVTMTCTSEGLPAPQIFWSKKLDNGNLQLLSENATL
                     TLIAMRMEDSGIYMCEGVNLVGKDRKEVKLIVQEKMFTVEISPGSQIAAQIGDSVVLT
                     CDVMGCESPSFSWRTQIDSPLNGKVRSEGSKSTLTLSPVRFENEHFYLCTVTCGHKKL
                     EKGIHVELYSFLRDPEIEMSGLLVSGNPVTVSCKVPDVYPFDRLEIELLKGESIMKNK
                     IFWEDVSKKSLETKSLELTFIPTTEDTGKVLVCLAKLPIDEMEFEPKQRQSTQILYVN
                     VAPRDTTILISPSSILEEGRSVNMTCSSDGLPAPKILWSRLLSNGDLQPLSENTTLTL
                     TSTKMEDSGIYVCEGINQVGISRKEVKLIIQVAPKDIRLTAFPSESVKEGDTVIISCT
                     CGNVPQTLIILKKKAGSGYIVLKSTDGAYTIHRAQLEDAGVYECESKNEVGLQLRSIT
                     LDVKGRESNKHYFSPELLVLYCASSLIIPAIGMIIYFARKANMKGSYSLVEAQKSKV"
     misc_feature    200..466
                     /gene="VCAM1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    254..268
                     /gene="VCAM1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409536"
     misc_feature    293..307
                     /gene="VCAM1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409536"
     misc_feature    359..373
                     /gene="VCAM1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409536"
     misc_feature    401..418
                     /gene="VCAM1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409536"
     misc_feature    440..451
                     /gene="VCAM1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409536"
     misc_feature    473..772
                     /gene="VCAM1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    524..538
                     /gene="VCAM1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409486"
     misc_feature    572..586
                     /gene="VCAM1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409486"
     misc_feature    659..673
                     /gene="VCAM1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409486"
     misc_feature    701..718
                     /gene="VCAM1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409486"
     misc_feature    761..772
                     /gene="VCAM1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409486"
     misc_feature    821..1051
                     /gene="VCAM1"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    851..865
                     /gene="VCAM1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    890..904
                     /gene="VCAM1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    947..961
                     /gene="VCAM1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    989..1006
                     /gene="VCAM1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1028..1039
                     /gene="VCAM1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1064..1330
                     /gene="VCAM1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1118..1132
                     /gene="VCAM1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409536"
     misc_feature    1157..1171
                     /gene="VCAM1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409536"
     misc_feature    1223..1237
                     /gene="VCAM1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409536"
     misc_feature    1265..1282
                     /gene="VCAM1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409536"
     misc_feature    1304..1315
                     /gene="VCAM1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409536"
     misc_feature    1340..1636
                     /gene="VCAM1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1388..1402
                     /gene="VCAM1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409486"
     misc_feature    1436..1450
                     /gene="VCAM1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409486"
     misc_feature    1523..1537
                     /gene="VCAM1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409486"
     misc_feature    1565..1582
                     /gene="VCAM1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409486"
     misc_feature    1625..1636
                     /gene="VCAM1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409486"
     misc_feature    1682..1915
                     /gene="VCAM1"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    1715..1729
                     /gene="VCAM1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1754..1768
                     /gene="VCAM1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1811..1825
                     /gene="VCAM1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1853..1870
                     /gene="VCAM1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1943..2191
                     /gene="VCAM1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1982..1996
                     /gene="VCAM1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    2012..2026
                     /gene="VCAM1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    2078..2092
                     /gene="VCAM1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    2120..2137
                     /gene="VCAM1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    2168..2179
                     /gene="VCAM1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 gactttctat ttcattcttc actgaacctc actggcttta ggagctcaag acttcccagg
       61 cactttcagt ggggacagaa agaagggttt tggaaccatt attttctcat aacaacagca
      121 acttaaaatg cctaggaaga tggttgtgat ctttggagcc tcaaatatac tttggatggt
      181 gtttgcagtt tctcaagctt ttaaaatcga catcttccct gaatccaaaa ttattgctca
      241 gattggtgac tccatctcac tgacttgtag cacaacaggc tgtgagtccc catcgttctc
      301 ctggagaact cagatagaca gtccactgaa cgggaaggtg agaaatgagg ggaccaaatc
      361 cacgctgacc atggatcctg ttagtctggg gaatgaacac tattacctgt gcacagtgat
      421 ttgtgagtct cagaaactgg aaagaggaat cccagtggag atctactctt tccctaagga
      481 cccagagatc catttgagtg gccccctgga ggttgggaag ccagtcacag tcacgtgttt
      541 ggtccctgat gtttacccat atgaaaggct ggagatagaa ttactgaagg gcaaccgttc
      601 tgtgaagaca caggactttc tggaggtttc agaaatgaag tcccaggaaa cgaagagtgt
      661 ggaagtaacc ttcactccta ttgatgagga tattgggaaa gctcttgttt gccaagctac
      721 attacacatt aatgaaattg attctcaacc ccaagtaagg aagactacaa aaaaactgca
      781 agtctacatc tcacccaagg acacagttat atctgtgaac ccctccacaa gcctgcaaga
      841 aggtgactcc gtgacgatga catgtaccag tgaaggtcta ccagctccac agattttctg
      901 gagcaagaaa ttagacaatg ggaatctaca gctcctttct gagaatgcaa ctctcacttt
      961 aattgctatg aggatggaag attctggaat ttatatgtgt gaaggagtta atctggttgg
     1021 gaaagacaga aaagaggtga aattaattgt tcaagagaaa atgtttactg tagagatctc
     1081 ccctggatcc cagattgctg ctcagattgg cgactcagtt gtgttgacct gtgatgtcat
     1141 gggttgtgag tccccatctt tctcttggag aacccagata gacagtcctc tgaacgggaa
     1201 ggtgaggagc gaggggtcca agtccacatt gaccctgagt cctgtgagat ttgagaacga
     1261 acatttttat ctgtgcaccg tgacatgtgg gcataagaaa ctggaaaaag gaatccatgt
     1321 ggagctctac tccttcctta gagatccaga aattgagatg agtggtctgt tagtgagtgg
     1381 aaacccagtc actgtaagct gtaaggttcc tgatgtgtac ccttttgacc ggctggaaat
     1441 tgaattactt aaaggggaga gtattatgaa gaataaaatc ttttgggaag atgtaagtaa
     1501 gaaatcccta gagaccaaga gtttggaact gaccttcatc cccaccactg aagacacggg
     1561 aaaagttctt gtttgtctgg ctaagttacc tattgatgaa atggaatttg aacccaaaca
     1621 aaggcagagt acacagatac tatatgttaa tgttgctccc agggatacaa ccatcttgat
     1681 cagcccctcc tccatcctgg aggaaggtag atctgtgaat atgacatgct ctagcgatgg
     1741 ccttccagct ccgaaaatcc tgtggagcag gctgctaagt aatggggatc tacagcctct
     1801 ttctgagaat accactctta ccttaacgtc tacaaaaatg gaagattctg gtatttatgt
     1861 ctgtgaaggc attaaccagg ttggaataag cagaaaagaa gtcaaattaa ttatccaagt
     1921 tgctccgaaa gatatacgac ttacagcttt tccttctgag agtgtcaagg aaggagacac
     1981 tgtcattatc tcctgtacat gtggaaatgt accccaaact ttgataatcc tgaagaaaaa
     2041 agcagggtca ggctacatag tgctgaagtc tacagatggt gcatatacca tccacagggc
     2101 ccagttggag gatgcgggag tatacgaatg tgaatctaaa aatgaagttg gcttgcaatt
     2161 aagaagcata acacttgatg ttaaaggaag agaaagtaac aagcactatt tttctcctga
     2221 acttctcgtg ctctattgtg catcctcctt aataatacct gccattggaa tgattattta
     2281 ctttgctaga aaagccaaca tgaaagggtc atacagtctt gtagaagcac agaaatcaaa
     2341 agtgtagcta atgtttgaca tgttcaatca gagacactat ttatcagttc aaatcctcag
     2401 tactgctcat cattccacga ggaaaacaac aagctaggag tacagacttc cttgaatgta
     2461 gtgaactctt ggaaagaaat ggctgcctat gccccttgtt gtgagcaaga agccaaagga
     2521 aaatttctgc ctaaaaaata ggcactacct ttgagatgtg atgactggag tagtttcttg
     2581 atgtgtatat gcaataacat gatttgtata tatgtagaat aaaactatgc catagcaaga
     2641 ttgcttggaa tatcagcaca ctatagtcac atttctataa ttattaaaat gttgcttgga
     2701 ttgactgtta taacttaaag catcttaata ttgattggca gctgaactat gtcatctttt
     2761 taatatttta tttcctttaa caaaatttta ttcctataaa gttcatagac aacaattcca
     2821 tgttttgtaa agatgttagg actttacatt gttataggca aatgataaac caagagggca
     2881 ctgggttggc tttcaggtac taaacaattc aacctatggt atagtggttg attggatttc
     2941 tctggatggt actaatacgg tacagagacg ttttatgatg ttatttgttc atcagacttg
     3001 tgtaactttc ccaatgtggt ctaaaaatgc aacttctttt gattttcttt tgtaaatgtt
     3061 taggtttttt tgtatagtaa agtgataatt tctggaattg aaa
//
LOCUS       XM_032614821            1464 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus complement C1q C chain (C1QC), mRNA.
ACCESSION   XM_032614821
VERSION     XM_032614821.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1464
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1464
                     /gene="C1QC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744747"
     CDS             158..895
                     /gene="C1QC"
                     /codon_start=1
                     /product="complement C1q subcomponent subunit C"
                     /protein_id="XP_032470712.1"
                     /db_xref="GeneID:116744747"
                     /translation="MDMGSSSWPRLVPNLLLLLLALLPGGQAGTDCYGIAGMPGLPGA
                     PGKDGHDGLPGPKGEPGIPAIPGTRGPKGQKGDPGTPGYPGKNGPMGTPGIPGDPGNM
                     GPPGDPGDEGRYKQNHQSVFTVTRQTVQFPAPNSLVKFNSVITNPQGDYDTNTGKFTC
                     KVPGLYYFVYHTSHTANLCVQLYRNGVKVTTFCDHMSNTKQVSSGSVLLRMQAGEEVW
                     LAVNDYNGMVGTEGSDSVFSGFLLFPD"
     misc_feature    <227..>481
                     /gene="C1QC"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    494..892
                     /gene="C1QC"
                     /note="Complement component C1q domain; Region: C1Q;
                     smart00110"
                     /db_xref="CDD:128420"
ORIGIN      
        1 ttggggagag gaggggaggg gacagcacag tctgcccagg cccttcttgc tgtgtccaca
       61 ctgacacggt gtcctcctgc cttggagagg ggaagcagat ctgaggacat ctctgtgacc
      121 agaccagaaa cctcccacct gtgcagctcc ttcccaaatg gacatggggt ccagctcctg
      181 gccccgcctt gtaccaaacc tgctactgct cttgctggca ctgctgcctg ggggccaagc
      241 tggcacagac tgctatggga tcgccgggat gccgggcctg cctggggccc cagggaagga
      301 tgggcatgac ggattgccag ggcccaaggg tgaaccagga atcccagcta tccctgggac
      361 acgaggacca aagggtcaga agggagatcc tggcacacct ggctatcctg ggaaaaatgg
      421 tcccatggga acccctggga ttccagggga tcccggcaac atgggacccc ctggggaccc
      481 gggtgatgag ggcaggtaca agcagaatca ccagtcagta ttcactgtca cacggcagac
      541 agtccagttc ccagcgccca acagcctggt caagttcaac tcagtcatca caaacccaca
      601 gggggattac gacacgaaca ctggcaagtt cacctgcaaa gttcccggcc tctactactt
      661 tgtctaccac acgtcacaca cggccaacct gtgtgtgcag ctgtaccgca acggtgtcaa
      721 ggtgaccacc ttctgtgacc acatgtccaa caccaagcag gtcagctcag gcagtgtgct
      781 gctgcggatg caggcgggcg aggaggtgtg gctggcggtc aacgactaca acggcatggt
      841 gggcaccgag ggctccgaca gtgtcttctc cggcttcctg ctcttccctg actagggcag
      901 gcagacctgc tccactcccc ggggccaccc catctccctc agcttccctg caagaaccca
      961 ctgggccaca catccttgct caggtcattc tcgccactgg atggactcct cctccaggaa
     1021 gcccaccctg ccctcctgcc ctgagttctc tccctcctcc aagctccttc aggagtcact
     1081 gctttgacac ttaaccaaca ccttctgata ctgtcattgg tgttttccaa gtcttggaag
     1141 agacagagag atacatgaat aaataattaa atcaaaggct acgcacggct ccgaatcctc
     1201 actgccaatt ccctaagaag tagttccctt catcttccac tttgcccctg ccacagccat
     1261 gtgtgggctc cagattcagg catctagctg gtgttcagta aagcttggtg ccaaggtaga
     1321 gacactcagc gccatttggc catttgggag agagatggtc aaatgtggct gaaggctgca
     1381 aggggtcccc aaagggccat ccgttgtcac ttgtttgggt gagaggcact gctgtcatta
     1441 aaggtattcg tgctcacagg taaa
//
LOCUS       XM_032614830            1680 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 54 (TMEM54),
            transcript variant X1, mRNA.
ACCESSION   XM_032614830
VERSION     XM_032614830.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1680
                     /gene="TMEM54"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116744758"
     CDS             302..1072
                     /gene="TMEM54"
                     /codon_start=1
                     /product="transmembrane protein 54 isoform X1"
                     /protein_id="XP_032470721.1"
                     /db_xref="GeneID:116744758"
                     /translation="MRKLRHREGGLSVGDFRKVLMKTGLVLVVLGHVSFIAAALLHGT
                     VLRYVAAPNDAVALQYSVVNILSVTSAIVVITSGIAVIVLSRYLPSIPLRWTVFSSSV
                     ACALLSLTCALGLLASIAVTFATQGQALLAACTFGDPELLALAPDCPFDPTRIYSSSL
                     CLWGISLLFCMAESVFAVRSAQVTYQLLELRPWLGKSSHHMITLASHSSHFLDVLKEK
                     TQTQWAWQPLTSPQMRESPEPVEDHDLQSCTSSGLMTL"
     misc_feature    362..904
                     /gene="TMEM54"
                     /note="Beta-casein like protein; Region: BCLP; pfam12304"
                     /db_xref="CDD:463527"
ORIGIN      
        1 ccggtcggac cggcccggga tgcaaacgag ccgccggggc cctcccgggg ccgggccgcc
       61 cagggggtga cgggaaggga ggccggccgg gcgctccggg ctcgaggcgg gaagtgggcg
      121 cggcgcgggc tctgctgggc gctcggcggc tgcggaccag tatgggagtg gggccgaccg
      181 gccgcccgca gcgtctgcag ccccgctgaa gacgccgcgg agcgtccgct cgggagccga
      241 gatgtgtctg cgcctggaga tccaaggact ctcatgaaag cactgtgaac cccttttcct
      301 gatgaggaaa ctgaggcaca gagaaggtgg cctgagtgtg ggtgacttcc ggaaggtgct
      361 gatgaagacg gggctggtgc tggtggtgct gggccacgtg agcttcatcg cagctgctct
      421 cctccatggc acggtgctgc gctatgtggc agcccccaac gatgctgtgg ctctgcagta
      481 ctctgtggtc aacatcctct ctgtcacttc tgccattgtg gtcatcacct caggcattgc
      541 agtcatcgtg ttatcacgct acctccccag catccctctg cgctggacgg tgtttagctc
      601 gagtgtggcc tgtgcccttc tctctctgac ctgtgctctc ggcctcttgg cctcgattgc
      661 tgtgaccttt gccacccagg gccaggcact gctggccgcc tgtacttttg gggaccccga
      721 actactggca ctggcgcccg actgtccctt cgaccccact cgcatttaca gctccagcct
      781 gtgtctctgg ggcatctcgt tactgttctg catggcagag agtgtgtttg ctgtccgcag
      841 tgcccaggtc acctaccagt tgctggaact gaggccctgg ttggggaaaa gcagccatca
      901 catgatcacc ctagcctccc actcctccca ctttctggat gtcctgaagg agaagaccca
      961 gacccagtgg gcctggcagc ctctgacatc tccacagatg cgggagagcc cagagcctgt
     1021 ggaggaccac gacctgcaga gctgcactag ctctgggctg atgacccttt gacagctgtt
     1081 gcctcaccca agccccgtgg ccactggggc cctccagcca agtctgcact gtgatcaggc
     1141 caggattcct ggagccagcc aagagggctc aatgccactc caggacccgg gtgggtcttt
     1201 cacccctctc ctccagccac ccagcccact gcactgaaac gagactttat tctgaagata
     1261 ttaaaaagaa cagagatgct ccacgtggat gcatgcagcg ggggagggga ctcggccggg
     1321 ggcctgtgct gctctcccac acaggacact gtgggtggcg ctctaggtgt gtctgcccat
     1381 ctgtctgtgg gcctgtgtgt gtatctgaga gagacaagac acacagaggg gtccgtgggt
     1441 ctgtgttcat caaaatgctg aaacgcaggc gggggttcat gggactcaca gctggggggc
     1501 tggaagcagg aggttttcct tttgcatcat ggcctccggg ccaacaaggg caggaacagg
     1561 caaggttgag gccctcctgc agggaaggat ggctcaagga aggtttctcc tcaagccccc
     1621 aaacctctgg aatccttctc tccgctccaa ataaaaagac aggcatgatt cccatctcca
//
LOCUS       XM_032614835            1608 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 54 (TMEM54),
            transcript variant X2, mRNA.
ACCESSION   XM_032614835
VERSION     XM_032614835.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1608
                     /gene="TMEM54"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744758"
     CDS             239..1000
                     /gene="TMEM54"
                     /codon_start=1
                     /product="transmembrane protein 54 isoform X2"
                     /protein_id="XP_032470726.1"
                     /db_xref="GeneID:116744758"
                     /translation="MCLRLGGLSVGDFRKVLMKTGLVLVVLGHVSFIAAALLHGTVLR
                     YVAAPNDAVALQYSVVNILSVTSAIVVITSGIAVIVLSRYLPSIPLRWTVFSSSVACA
                     LLSLTCALGLLASIAVTFATQGQALLAACTFGDPELLALAPDCPFDPTRIYSSSLCLW
                     GISLLFCMAESVFAVRSAQVTYQLLELRPWLGKSSHHMITLASHSSHFLDVLKEKTQT
                     QWAWQPLTSPQMRESPEPVEDHDLQSCTSSGLMTL"
     misc_feature    290..832
                     /gene="TMEM54"
                     /note="Beta-casein like protein; Region: BCLP; pfam12304"
                     /db_xref="CDD:463527"
ORIGIN      
        1 gtcggaccgg cccgggatgc aaacgagccg ccggggccct cccggggccg ggccgcccag
       61 ggggtgacgg gaagggaggc cggccgggcg ctccgggctc gaggcgggaa gtgggcgcgg
      121 cgcgggctct gctgggcgct cggcggctgc ggaccagtat gggagtgggg ccgaccggcc
      181 gcccgcagcg tctgcagccc cgctgaagac gccgcggagc gtccgctcgg gagccgagat
      241 gtgtctgcgc ctgggtggcc tgagtgtggg tgacttccgg aaggtgctga tgaagacggg
      301 gctggtgctg gtggtgctgg gccacgtgag cttcatcgca gctgctctcc tccatggcac
      361 ggtgctgcgc tatgtggcag cccccaacga tgctgtggct ctgcagtact ctgtggtcaa
      421 catcctctct gtcacttctg ccattgtggt catcacctca ggcattgcag tcatcgtgtt
      481 atcacgctac ctccccagca tccctctgcg ctggacggtg tttagctcga gtgtggcctg
      541 tgcccttctc tctctgacct gtgctctcgg cctcttggcc tcgattgctg tgacctttgc
      601 cacccagggc caggcactgc tggccgcctg tacttttggg gaccccgaac tactggcact
      661 ggcgcccgac tgtcccttcg accccactcg catttacagc tccagcctgt gtctctgggg
      721 catctcgtta ctgttctgca tggcagagag tgtgtttgct gtccgcagtg cccaggtcac
      781 ctaccagttg ctggaactga ggccctggtt ggggaaaagc agccatcaca tgatcaccct
      841 agcctcccac tcctcccact ttctggatgt cctgaaggag aagacccaga cccagtgggc
      901 ctggcagcct ctgacatctc cacagatgcg ggagagccca gagcctgtgg aggaccacga
      961 cctgcagagc tgcactagct ctgggctgat gaccctttga cagctgttgc ctcacccaag
     1021 ccccgtggcc actggggccc tccagccaag tctgcactgt gatcaggcca ggattcctgg
     1081 agccagccaa gagggctcaa tgccactcca ggacccgggt gggtctttca cccctctcct
     1141 ccagccaccc agcccactgc actgaaacga gactttattc tgaagatatt aaaaagaaca
     1201 gagatgctcc acgtggatgc atgcagcggg ggaggggact cggccggggg cctgtgctgc
     1261 tctcccacac aggacactgt gggtggcgct ctaggtgtgt ctgcccatct gtctgtgggc
     1321 ctgtgtgtgt atctgagaga gacaagacac acagaggggt ccgtgggtct gtgttcatca
     1381 aaatgctgaa acgcaggcgg gggttcatgg gactcacagc tggggggctg gaagcaggag
     1441 gttttccttt tgcatcatgg cctccgggcc aacaagggca ggaacaggca aggttgaggc
     1501 cctcctgcag ggaaggatgg ctcaaggaag gtttctcctc aagcccccaa acctctggaa
     1561 tccttctctc cgctccaaat aaaaagacag gcatgattcc catctcca
//
LOCUS       XM_032614843            1579 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 54 (TMEM54),
            transcript variant X3, mRNA.
ACCESSION   XM_032614843
VERSION     XM_032614843.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1579
                     /gene="TMEM54"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744758"
     CDS             294..971
                     /gene="TMEM54"
                     /codon_start=1
                     /product="transmembrane protein 54 isoform X3"
                     /protein_id="XP_032470734.1"
                     /db_xref="GeneID:116744758"
                     /translation="MRKLRHREGGLSVGDFRKVLMKTGLVLVVLGHVSFIAAALLHGT
                     VLRYVAAPNDAVALQYSVVNILSVTSAIVVITSGIAVIVLSRYLPSIPLRWTVFSSSV
                     ACALLSLTCALGLLASIAVTFATQGQALLAACTFGDPELLALAPDCPFDPTRIYSSSL
                     CLWGISLLFCMAESVFAVRSAQVTYQLLELRPWLGKSSHHMMRESPEPVEDHDLQSCT
                     SSGLMTL"
     misc_feature    354..899
                     /gene="TMEM54"
                     /note="Beta-casein like protein; Region: BCLP; pfam12304"
                     /db_xref="CDD:463527"
ORIGIN      
        1 accggcccgg gatgcaaacg agccgccggg gccctcccgg ggccgggccg cccagggggt
       61 gacgggaagg gaggccggcc gggcgctccg ggctcgaggc gggaagtggg cgcggcgcgg
      121 gctctgctgg gcgctcggcg gctgcggacc agtatgggag tggggccgac cggccgcccg
      181 cagcgtctgc agccccgctg aagacgccgc ggagcgtccg ctcgggagcc gagatgtgtc
      241 tgcgcctgga gatccaagga ctctcatgaa agcactgtga accccttttc ctgatgagga
      301 aactgaggca cagagaaggt ggcctgagtg tgggtgactt ccggaaggtg ctgatgaaga
      361 cggggctggt gctggtggtg ctgggccacg tgagcttcat cgcagctgct ctcctccatg
      421 gcacggtgct gcgctatgtg gcagccccca acgatgctgt ggctctgcag tactctgtgg
      481 tcaacatcct ctctgtcact tctgccattg tggtcatcac ctcaggcatt gcagtcatcg
      541 tgttatcacg ctacctcccc agcatccctc tgcgctggac ggtgtttagc tcgagtgtgg
      601 cctgtgccct tctctctctg acctgtgctc tcggcctctt ggcctcgatt gctgtgacct
      661 ttgccaccca gggccaggca ctgctggccg cctgtacttt tggggacccc gaactactgg
      721 cactggcgcc cgactgtccc ttcgacccca ctcgcattta cagctccagc ctgtgtctct
      781 ggggcatctc gttactgttc tgcatggcag agagtgtgtt tgctgtccgc agtgcccagg
      841 tcacctacca gttgctggaa ctgaggccct ggttggggaa aagcagccat cacatgatgc
      901 gggagagccc agagcctgtg gaggaccacg acctgcagag ctgcactagc tctgggctga
      961 tgaccctttg acagctgttg cctcacccaa gccccgtggc cactggggcc ctccagccaa
     1021 gtctgcactg tgatcaggcc aggattcctg gagccagcca agagggctca atgccactcc
     1081 aggacccggg tgggtctttc acccctctcc tccagccacc cagcccactg cactgaaacg
     1141 agactttatt ctgaagatat taaaaagaac agagatgctc cacgtggatg catgcagcgg
     1201 gggaggggac tcggccgggg gcctgtgctg ctctcccaca caggacactg tgggtggcgc
     1261 tctaggtgtg tctgcccatc tgtctgtggg cctgtgtgtg tatctgagag agacaagaca
     1321 cacagagggg tccgtgggtc tgtgttcatc aaaatgctga aacgcaggcg ggggttcatg
     1381 ggactcacag ctggggggct ggaagcagga ggttttcctt ttgcatcatg gcctccgggc
     1441 caacaagggc aggaacaggc aaggttgagg ccctcctgca gggaaggatg gctcaaggaa
     1501 ggtttctcct caagccccca aacctctgga atccttctct ccgctccaaa taaaaagaca
     1561 ggcatgattc ccatctcca
//
LOCUS       XM_032614849            1614 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 54 (TMEM54),
            transcript variant X4, mRNA.
ACCESSION   XM_032614849
VERSION     XM_032614849.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1614
                     /gene="TMEM54"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744758"
     CDS             307..984
                     /gene="TMEM54"
                     /codon_start=1
                     /product="transmembrane protein 54 isoform X4"
                     /protein_id="XP_032470740.1"
                     /db_xref="GeneID:116744758"
                     /translation="MRKLRHREGGLSVGDFRKVLMKTGLVLVVLGHVSFIAAALLHGT
                     VLRYVAAPNDAVALQYSVVNILSVTSAIVVITSGIAVIVLSRYLPSIPLRWTVFSSSV
                     ACALLSLTCALGLLASIAVTFATQGQALLAACTFGDPELLALAPDCPFDPTRIYCPGH
                     LPVAGTEALVGEKQPSHDHPSLPLLPLSGCPEGEDPDPVGLAASDISTDAGEPRACGG
                     PRPAELH"
     misc_feature    367..>774
                     /gene="TMEM54"
                     /note="Beta-casein like protein; Region: BCLP; pfam12304"
                     /db_xref="CDD:463527"
ORIGIN      
        1 cccagccggt cggaccggcc cgggatgcaa acgagccgcc ggggccctcc cggggccggg
       61 ccgcccaggg ggtgacggga agggaggccg gccgggcgct ccgggctcga ggcgggaagt
      121 gggcgcggcg cgggctctgc tgggcgctcg gcggctgcgg accagtatgg gagtggggcc
      181 gaccggccgc ccgcagcgtc tgcagccccg ctgaagacgc cgcggagcgt ccgctcggga
      241 gccgagatgt gtctgcgcct ggagatccaa ggactctcat gaaagcactg tgaacccctt
      301 ttcctgatga ggaaactgag gcacagagaa ggtggcctga gtgtgggtga cttccggaag
      361 gtgctgatga agacggggct ggtgctggtg gtgctgggcc acgtgagctt catcgcagct
      421 gctctcctcc atggcacggt gctgcgctat gtggcagccc ccaacgatgc tgtggctctg
      481 cagtactctg tggtcaacat cctctctgtc acttctgcca ttgtggtcat cacctcaggc
      541 attgcagtca tcgtgttatc acgctacctc cccagcatcc ctctgcgctg gacggtgttt
      601 agctcgagtg tggcctgtgc ccttctctct ctgacctgtg ctctcggcct cttggcctcg
      661 attgctgtga cctttgccac ccagggccag gcactgctgg ccgcctgtac ttttggggac
      721 cccgaactac tggcactggc gcccgactgt cccttcgacc ccactcgcat ttactgccca
      781 ggtcacctac cagttgctgg aactgaggcc ctggttgggg aaaagcagcc atcacatgat
      841 caccctagcc tcccactcct cccactttct ggatgtcctg aaggagaaga cccagaccca
      901 gtgggcctgg cagcctctga catctccaca gatgcgggag agcccagagc ctgtggagga
      961 ccacgacctg cagagctgca ctagctctgg gctgatgacc ctttgacagc tgttgcctca
     1021 cccaagcccc gtggccactg gggccctcca gccaagtctg cactgtgatc aggccaggat
     1081 tcctggagcc agccaagagg gctcaatgcc actccaggac ccgggtgggt ctttcacccc
     1141 tctcctccag ccacccagcc cactgcactg aaacgagact ttattctgaa gatattaaaa
     1201 agaacagaga tgctccacgt ggatgcatgc agcgggggag gggactcggc cgggggcctg
     1261 tgctgctctc ccacacagga cactgtgggt ggcgctctag gtgtgtctgc ccatctgtct
     1321 gtgggcctgt gtgtgtatct gagagagaca agacacacag aggggtccgt gggtctgtgt
     1381 tcatcaaaat gctgaaacgc aggcgggggt tcatgggact cacagctggg gggctggaag
     1441 caggaggttt tccttttgca tcatggcctc cgggccaaca agggcaggaa caggcaaggt
     1501 tgaggccctc ctgcagggaa ggatggctca aggaaggttt ctcctcaagc ccccaaacct
     1561 ctggaatcct tctctccgct ccaaataaaa agacaggcat gattcccatc tcca
//
LOCUS       XM_032614855            1506 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 54 (TMEM54),
            transcript variant X5, mRNA.
ACCESSION   XM_032614855
VERSION     XM_032614855.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1506
                     /gene="TMEM54"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744758"
     CDS             230..898
                     /gene="TMEM54"
                     /codon_start=1
                     /product="transmembrane protein 54 isoform X5"
                     /protein_id="XP_032470746.1"
                     /db_xref="GeneID:116744758"
                     /translation="MCLRLGGLSVGDFRKVLMKTGLVLVVLGHVSFIAAALLHGTVLR
                     YVAAPNDAVALQYSVVNILSVTSAIVVITSGIAVIVLSRYLPSIPLRWTVFSSSVACA
                     LLSLTCALGLLASIAVTFATQGQALLAACTFGDPELLALAPDCPFDPTRIYSSSLCLW
                     GISLLFCMAESVFAVRSAQVTYQLLELRPWLGKSSHHMMRESPEPVEDHDLQSCTSSG
                     LMTL"
     misc_feature    281..826
                     /gene="TMEM54"
                     /note="Beta-casein like protein; Region: BCLP; pfam12304"
                     /db_xref="CDD:463527"
ORIGIN      
        1 gcccgggatg caaacgagcc gccggggccc tcccggggcc gggccgccca gggggtgacg
       61 ggaagggagg ccggccgggc gctccgggct cgaggcggga agtgggcgcg gcgcgggctc
      121 tgctgggcgc tcggcggctg cggaccagta tgggagtggg gccgaccggc cgcccgcagc
      181 gtctgcagcc ccgctgaaga cgccgcggag cgtccgctcg ggagccgaga tgtgtctgcg
      241 cctgggtggc ctgagtgtgg gtgacttccg gaaggtgctg atgaagacgg ggctggtgct
      301 ggtggtgctg ggccacgtga gcttcatcgc agctgctctc ctccatggca cggtgctgcg
      361 ctatgtggca gcccccaacg atgctgtggc tctgcagtac tctgtggtca acatcctctc
      421 tgtcacttct gccattgtgg tcatcacctc aggcattgca gtcatcgtgt tatcacgcta
      481 cctccccagc atccctctgc gctggacggt gtttagctcg agtgtggcct gtgcccttct
      541 ctctctgacc tgtgctctcg gcctcttggc ctcgattgct gtgacctttg ccacccaggg
      601 ccaggcactg ctggccgcct gtacttttgg ggaccccgaa ctactggcac tggcgcccga
      661 ctgtcccttc gaccccactc gcatttacag ctccagcctg tgtctctggg gcatctcgtt
      721 actgttctgc atggcagaga gtgtgtttgc tgtccgcagt gcccaggtca cctaccagtt
      781 gctggaactg aggccctggt tggggaaaag cagccatcac atgatgcggg agagcccaga
      841 gcctgtggag gaccacgacc tgcagagctg cactagctct gggctgatga ccctttgaca
      901 gctgttgcct cacccaagcc ccgtggccac tggggccctc cagccaagtc tgcactgtga
      961 tcaggccagg attcctggag ccagccaaga gggctcaatg ccactccagg acccgggtgg
     1021 gtctttcacc cctctcctcc agccacccag cccactgcac tgaaacgaga ctttattctg
     1081 aagatattaa aaagaacaga gatgctccac gtggatgcat gcagcggggg aggggactcg
     1141 gccgggggcc tgtgctgctc tcccacacag gacactgtgg gtggcgctct aggtgtgtct
     1201 gcccatctgt ctgtgggcct gtgtgtgtat ctgagagaga caagacacac agaggggtcc
     1261 gtgggtctgt gttcatcaaa atgctgaaac gcaggcgggg gttcatggga ctcacagctg
     1321 gggggctgga agcaggaggt tttccttttg catcatggcc tccgggccaa caagggcagg
     1381 aacaggcaag gttgaggccc tcctgcaggg aaggatggct caaggaaggt ttctcctcaa
     1441 gcccccaaac ctctggaatc cttctctccg ctccaaataa aaagacaggc atgattccca
     1501 tctcca
//
LOCUS       XR_004347140             558 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744790
            (LOC116744790), ncRNA.
ACCESSION   XR_004347140
VERSION     XR_004347140.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..558
                     /gene="LOC116744790"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744790"
     ncRNA           1..558
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744790"
                     /product="uncharacterized LOC116744790"
                     /db_xref="GeneID:116744790"
ORIGIN      
        1 taagacacac acacacacat acatacacac acacatcact ttttcaaagc ctgatacatt
       61 ttatcaagaa catcatactc agtttcagtg ccagtatgtt ttcatcatgg agattaactt
      121 ttgcctgaca caggtggggc tctttctgag atcaccatga ataactcagg tgaagacagg
      181 cctgaatcaa gcagtcttgg tggcccaagt gtttcaccag gaaaaagcag tccctttact
      241 tcacttccct cccttgaaag tgcacttgtg acgttgatta ctgggaggaa tttccccaag
      301 gaagaaggaa aattcttgta tttgactgct ccacaagaaa gcttaaagaa cgtactggtt
      361 acttgaggtc tgccctctac agagaaccat tgcttgagaa gcaagaattc cgaggaattg
      421 gcagattcta gtccacattc tgccactaat cagctggtgg ccaaggatga gttaaccagg
      481 gacggctgga tgacatagtg gtgaaaatca ggcttagagt caggcagacc cgtgttctca
      541 tcctgaccct gcctctta
//
LOCUS       XM_032614876            4793 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus helicase for meiosis 1 (HFM1), mRNA.
ACCESSION   XM_032614876
VERSION     XM_032614876.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-86                VOSU01000011.1     81472979-81473064   c
            87-199              VOSU01000011.1     81465363-81465475   c
            200-509             VOSU01000011.1     81463519-81463828   c
            510-775             VOSU01000011.1     81456378-81456643   c
            776-823             VOSU01000011.1     81456077-81456124   c
            824-894             VOSU01000011.1     81444391-81444461   c
            895-1027            VOSU01000011.1     81443796-81443928   c
            1028-1179           VOSU01000011.1     81443004-81443155   c
            1180-1257           VOSU01000011.1     81442345-81442422   c
            1258-1416           VOSU01000011.1     81441968-81442126   c
            1417-1617           VOSU01000011.1     81439578-81439778   c
            1618-1706           VOSU01000011.1     81439406-81439494   c
            1707-1750           VOSU01000011.1     81435120-81435163   c
            1751-1852           VOSU01000011.1     81434911-81435012   c
            1853-1998           VOSU01000011.1     81434382-81434527   c
            1999-2093           VOSU01000011.1     81433351-81433445   c
            2094-2227           VOSU01000011.1     81432598-81432731   c
            2228-2275           VOSU01000011.1     81431752-81431799   c
            2276-2356           VOSU01000011.1     81427263-81427343   c
            2357-2448           VOSU01000011.1     81421455-81421546   c
            2449-2555           VOSU01000011.1     81419880-81419986   c
            2556-2603           VOSU01000011.1     81419737-81419784   c
            2604-2701           VOSU01000011.1     81405122-81405219   c
            2702-2830           VOSU01000011.1     81404912-81405040   c
            2831-2916           VOSU01000011.1     81399031-81399116   c
            2917-3000           VOSU01000011.1     81398477-81398560   c
            3001-3158           VOSU01000011.1     81398195-81398352   c
            3159-3262           VOSU01000011.1     81396665-81396768   c
            3263-3397           VOSU01000011.1     81396058-81396192   c
            3398-3478           VOSU01000011.1     81375254-81375334   c
            3479-3594           VOSU01000011.1     81374892-81375007   c
            3595-3674           VOSU01000011.1     81365295-81365374   c
            3675-3747           VOSU01000011.1     81364217-81364289   c
            3748-3778           VOSU01000011.1     81364184-81364214   c
            3779-3892           VOSU01000011.1     81359612-81359725   c
            3893-3983           VOSU01000011.1     81358487-81358577   c
            3984-4086           VOSU01000011.1     81348496-81348598   c
            4087-4241           VOSU01000011.1     81348240-81348394   c
            4242-4793           VOSU01000011.1     81346948-81347499   c
FEATURES             Location/Qualifiers
     source          1..4793
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4793
                     /gene="HFM1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 8 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744795"
     CDS             16..4311
                     /gene="HFM1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: probable ATP-dependent DNA
                     helicase HFM1"
                     /protein_id="XP_032470767.1"
                     /db_xref="GeneID:116744795"
                     /translation="MLKSNDSLFSLDNLFFEKTDEAENHPDNEKSLDWFLPPAPLISE
                     IPETQALEEEMENHNLLGQRKRSKMLPSNLKITNEDTNYISQTQKFQFAFPSNEYEED
                     DLNFGGAGNNDLHVAGKLTYGSSQKWKNHTGTEIALEKNFPDDTKLINFAQDKGESTS
                     AFCKRLFKISDNIHGSAYSNDRVNLDSHIGSVKTVQMEMSKGKSWKYSNSKQKPQYSD
                     INMFRASDTFSASEIREGIIKGPSFSVASQPHEFQGVTENGFNSLKAVTEIPAKFRSI
                     FKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVLFELAITRLLMEVPLPWSNIK
                     IVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQQAHIIMTTPEKWD
                     SMTRKWRDNSLVQLVRLFLIDEIHVVKDENRGPTLEVVVSRMKTVQFLSHAVENTSSI
                     IPMRFVAVSATIPNAEDIAEWLSDGERSAVCLKMDEGHRPVKLEKVVLGFPCSNNQTE
                     FKFDLTLNYKVASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQRLH
                     KYAYSVRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNL
                     PAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQ
                     MLACSDNVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHYGFA
                     SGLSKDGIESKLQELCLKNLNDLSSLDLIKMDEDVNFKPTEAGRLMAWYYITFETVKK
                     FCTITGKETLLDLVTMIASCKEFLDIQLRTNEKKTLNTLNKDPNRITIRFPMGGRIKT
                     REMKVNCLIQAQLGCIPIQDFALTQDTSKIFRNGSRITRWLSDFMAIQEKFAVLLNSL
                     ILAKCFRCRLWENSLHVSKQLEKIGVTLSNAMVNAGLTTFKKIEETDARKLELILNRH
                     PPFGTQIKETVMYLPKYELEVEQIARYSDTMAEILVTVILRNFEQLQTKRTAPDSHYV
                     TLIIGDADNQLVSKHKIMDSVLLKAGNWAKKIDVRRALKSEDLSINLISSEYVGLDIQ
                     QKFTVFYLGPKRFGNQILMQKKPETEMSHFKHSIAVPSKGMTACKKPGNRECKHHCKN
                     KHTCGHDCCKNGVAQKSEMKESTVSSYLSDLRNRNAVSSLPPVKRLKMQMNKSQSVDL
                     KEFGFTPKPSLTSISRSEYLNIPELPIMEQRYQHEIYTKVQPEPSAYQDKEVLNVNFE
                     LGNEVWDDFDDESLIEVTSFSTDTEKTKTSGFGNPLSSRTRESKLPFEESKSKFQREM
                     SNSFVSSHEKPDIYLSNSAMSKFAASSMTKLPQQAGNVHLQEIQQQSLSPEIEKLYFT
                     HSEKIPSSSNFVKKVDCFIRNSEHKKEIDFSQYYPEDEADEIKSFLGIFDGIF"
     misc_feature    811..2484
                     /gene="HFM1"
                     /note="Replicative superfamily II helicase [Replication,
                     recombination and repair]; Region: BRR2; COG1204"
                     /db_xref="CDD:440817"
     misc_feature    859..1485
                     /gene="HFM1"
                     /note="DEXH-box helicase domain of ATP-dependent DNA
                     helicase HFM1; Region: DEXHc_HFM1; cd18023"
                     /db_xref="CDD:350781"
     misc_feature    order(859..867,874..876,934..954)
                     /gene="HFM1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350781"
     misc_feature    order(1036..1041,1120..1122,1174..1176,1180..1185,
                     1192..1194,1282..1284)
                     /gene="HFM1"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350781"
     misc_feature    2350..3288
                     /gene="HFM1"
                     /note="Sec63 Brl domain; Region: Sec63; pfam02889"
                     /db_xref="CDD:460740"
ORIGIN      
        1 gtccagtttt taacaatgct gaaatcaaat gactccttgt tttccttgga taatttgttt
       61 tttgaaaaaa cagatgaagc tgaaaaccat ccagacaatg aaaaatcttt ggattggttt
      121 ctgccacctg ctccattgat ttcggaaatt ccagagactc aagcattaga ggaagaaatg
      181 gaaaatcata atctgttagg tcagagaaag aggtcaaaaa tgttaccatc aaatttgaag
      241 atcactaatg aagacacaaa ttatatttca caaacacaaa aattccaatt tgccttccct
      301 tctaatgaat atgaagaaga tgatctaaat tttggagggg caggtaacaa tgacttacat
      361 gttgctggca agctgacata tggttcttct cagaaatgga aaaatcacac tggcactgag
      421 atagcacttg agaaaaattt tccagatgat acgaagttaa ttaattttgc acaagataaa
      481 ggagagagca cgtcagcctt ctgcaagaga ttatttaaaa tatctgacaa tatacatgga
      541 agtgcttatt ccaatgacag agtaaacttg gactctcata ttggctcagt gaaaactgtc
      601 caaatggaaa tgagcaaagg gaaatcatgg aaatatagca atagtaagca gaaacctcaa
      661 tattcagaca ttaatatgtt tagagccagt gatacttttt ctgcttctga aatcagagaa
      721 ggcataatca aaggaccatc tttttcagtt gcctcccagc ctcatgaatt tcaaggggta
      781 acagaaaatg gtttcaattc cttgaaggct gtcacagaaa tcccggcaaa atttagaagt
      841 attttcaaag aattcccata tttcaactat atacagtcca aagcctttga tgatcttctt
      901 tatacagata ggaattttgt gatttgtgct ccaactggtt cggggaaaac tgtattgttt
      961 gagctagcta taacaagatt gttaatggaa gtaccattgc catggtcgaa cattaaaatt
     1021 gtttacatgg caccaataaa agccctgtgt agtcagcgtt ttgatgattg gaaagaaaaa
     1081 tttggaccaa taggattgaa ctgtaaagaa ctcactggag atacagtaat ggatgactta
     1141 tttgagattc agcaagccca tattattatg acaactccag aaaaatggga tagcatgact
     1201 aggaaatgga gagacaactc tttggtccaa ctggttcgat tgtttctcat tgatgagata
     1261 cacgttgtaa aagatgaaaa tcgtggacca actcttgaag ttgtagtcag cagaatgaaa
     1321 actgtgcagt ttttatctca tgctgtagaa aataccagca gtattattcc aatgagattt
     1381 gtagctgtat ctgcaacaat tccaaatgct gaggatattg cagaatggct ttcagatggt
     1441 gaaagatctg ctgtatgtct gaaaatggat gagggacata gaccagtgaa acttgagaaa
     1501 gtggtccttg gatttccctg cagtaataac caaaccgaat ttaagtttga tttaaccctc
     1561 aactacaaag ttgccagtgt tatacaaatg tactctgatc agaaacccac gcttgtgttt
     1621 tgtgcaacaa ggaaaggtgt gcaacaggct gcttctgttc ttgtgaaaga tgcgaaattt
     1681 attatgactg tggaacagaa acagaggtta cataagtatg catattccgt aagagattca
     1741 aaactgagag atatcttaat acatggtgtt gcttatcatc atgctggtat ggagctgtca
     1801 gatagaaaag tagttgaagg agcttttact gttggagatc taccagttct ttttactacc
     1861 agtaccttag ccatgggagt aaatttgcct gctcacctag tagttataaa atctacaatg
     1921 cattatgctg gaggaatgtt tgaagagtac agtgaaacag acattctaca gatgattggt
     1981 agagctggtc gacctcaatt tgacactaca gctactgcag ttattatgac tcggttaagt
     2041 acaaaagaga agtatattca gatgctagct tgtagtgaca atgtagaaag cagtttgcac
     2101 agacatctta ttgagcattt aaatgcggag atagtattgc ataccatcac agatgtgaat
     2161 attgctttgg aatggatacg atcaaccttg ctttatatca gagccttgaa aaatccatct
     2221 cattatggtt ttgcatctgg attgagcaaa gatggaattg aatcaaaatt acaagaatta
     2281 tgtttgaaga atctgaatga tttatcatct ctggacctga taaagatgga tgaagatgtt
     2341 aatttcaaac caactgaggc aggaagattg atggcttggt attatattac atttgagaca
     2401 gtgaagaaat tttgtacaat cactggaaaa gaaactttat tggatctggt cacaatgata
     2461 gccagctgca aggaatttct agatatacag ttaagaacaa atgaaaagaa aacactgaat
     2521 actttgaaca aagatccaaa tcggataact atcagatttc caatgggagg aagaattaaa
     2581 acaagagaaa tgaaagtaaa ttgtcttatt caggctcagc taggatgcat tcccatacaa
     2641 gactttgctt tgacacaaga tacttcgaag attttcagaa atggctcacg aattacaaga
     2701 tggttgtcag attttatggc tattcaagaa aagtttgctg tactgttgaa cagtttgatt
     2761 ttagcgaagt gttttagatg tagactttgg gaaaactctc tgcatgtatc caaacagctg
     2821 gaaaaaatcg gtgtaacatt atcaaatgct atggtaaatg caggtttgac tacctttaaa
     2881 aagatagaag aaacagatgc aaggaaactt gaactgattt taaatagaca tccccctttt
     2941 ggaactcaga taaaagaaac agtgatgtat ctaccaaaat atgaacttga agtggaacag
     3001 attgcaagat atagtgatac catggcagaa atattagtga ctgttatatt aagaaatttt
     3061 gaacagctac aaactaaaag aacagcacca gattcccact acgttacctt aattataggt
     3121 gatgcagata atcaactggt ttctaagcac aaaattatgg attctgtttt gctaaaagct
     3181 ggaaattggg ctaaaaagat tgatgtgagg cgagctctta aatctgaaga tcttagcata
     3241 aatctaatta gttctgaata tgttggactt gatatacagc agaaatttac agtcttttac
     3301 ttaggaccca agagatttgg aaatcaaata cttatgcaaa aaaaaccaga aacagagatg
     3361 tcccatttta aacattcaat agcagtgccc agtaaaggaa tgactgcctg caaaaaacct
     3421 gggaaccgag aatgtaaaca tcactgtaaa aataaacata catgtggaca cgactgctgt
     3481 aaaaatggag ttgcacagaa gtcagaaatg aaagagtcaa cagtttcttc atatttatct
     3541 gatttaagaa acagaaatgc tgtttcatct cttcctccag tgaaacgtct aaagatgcag
     3601 atgaataaat ctcaaagtgt ggaccttaaa gagtttggtt ttactccaaa accttctctt
     3661 accagtatat caaggtcaga atatttaaac atacccgaat tgcctataat ggagcagagg
     3721 tatcagcatg agatctacac aaaggtccaa ccagaaccat ctgcatatca agacaaagaa
     3781 gttttgaatg tgaactttga attgggaaat gaagtttggg atgattttga tgatgaaagc
     3841 ttaatagaag ttactagctt ttcaactgat accgagaaga caaaaacatc aggatttgga
     3901 aaccctttga gttcaagaac cagggaaagt aagctaccct ttgaagaatc aaaaagcaaa
     3961 ttccaaagag aaatgtcaaa cagttttgtt tcatcacatg agaagccaga tatttattta
     4021 tcaaattctg ctatgtccaa gtttgctgca tcctccatga caaaattacc tcaacaagct
     4081 ggaaatgtcc atttacaaga aatacaacaa caaagtctgt cgccagagat tgaaaagctg
     4141 tactttactc actctgaaaa aataccaagc tcttcaaatt ttgttaagaa agtggattgc
     4201 tttattagaa acagtgaaca taaaaaggag attgatttca gtcagtatta tcctgaggat
     4261 gaagctgatg aaatcaagtc ttttctggga atatttgatg gtattttcta aaacaatcag
     4321 acaaaaatgc tttttatatt aataagacaa agtattaaag acacttaatt acaaagcatg
     4381 atttttattt ttaaaaagta gttcatattt gttcaggtat tttttctctt ggatttgact
     4441 agctttgttg actcttttgc aacaaaatat ttggattgat ttttttcccc atcatattga
     4501 taacttcata taaagcactt ttgcagtggc tttgtttcat aagttgataa ttgtttcatt
     4561 tagaaataat tattggttat taattgggtc ttgacgggaa cgaattttat attttcttaa
     4621 caagaaaaaa ggtattctgt gaaagcaaaa tgatggtagg tcagtgaatc tttactttat
     4681 cgatttttca ccattattgt tttgttttac taaagatttt taagaatcca atggctgtct
     4741 gaacctatta tatcatttca agcaacaata aatgaaacaa taatcaatat aga
//
LOCUS       XM_032614892            3114 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus colony stimulating factor 3 receptor
            (CSF3R), transcript variant X1, mRNA.
ACCESSION   XM_032614892
VERSION     XM_032614892.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3114
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3114
                     /gene="CSF3R"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744796"
     CDS             285..2828
                     /gene="CSF3R"
                     /codon_start=1
                     /product="granulocyte colony-stimulating factor receptor
                     isoform X1"
                     /protein_id="XP_032470783.1"
                     /db_xref="GeneID:116744796"
                     /translation="MAGLGAWNLARAALIILLLPRSLEQCGHISLSAPIVRLGDPITA
                     SCTISQNCSHLDSESHIVWKLEAELQPGERQQYLPNGTLQSTITLPHLNRSRALLSCC
                     LHWGNSLQILDQAELQAGYPPATPHNLSCLMNLTTNSLTCQWEPGPNTHLSTNFTLKS
                     FKSRGNCQSREDSIPDCVPEDGQSHCSIPRKHLQLYQNMGIWVQAKNALGTSVSPKLC
                     LVPMDVVKLEPPTLWALGPSPEVAPPQPGCLRLRWETWKPSLHIDQKCELRHQPLLGE
                     ASWDLVGALPSRTLQYELCGLLPSTAYALQMRCTRWRLPGHWSNWSPSLELTTTQRAP
                     TVRMDTWWRQRQLDPRTVDVQLFWQPVPLEEDSRQIQGYLVSLRPSDQAGADPILCNT
                     TELNCTFQLPSEAREVILEAYNTAGTSHPTPVVFLESGGPPLGRLHTVARDPHSLWVG
                     WEPPSPQPRGYVIEWGLGPPSPSGSPKTWRMEHNGSIAGTLLQENIRPFQLYEITVTP
                     LYQDTKGPSQHIYAYSQEMAPSHGPELHLRHIGKTWAQLEWVPEAPELGRSPLTHYTI
                     FWTNAQDRSFSTVLNASSHSFVLRGLEPSSLYHVHLMAASQVWATNSTSLTLMTLALG
                     FPLTLEESELHILLGLFGLLVLLICLCGAAQLCCRPSRKNPLWPSVPDPAHSSLGSWV
                     PTITTEDTFQLPSLRDSSMPPITKITVLEEEEKKPGPWESNDSSGTCGLPSLVQAYVL
                     QGDPRVPRMQPQPQSGTSDQVLYVQVLGSPTGPRPGHYLRCDSTQPLLGGLTPSPKSY
                     ENLWFQTSPLGTPEPLVPNPEDDCIFEPLLDFPLLQGLRVSGVEGLGGF"
     misc_feature    354..614
                     /gene="CSF3R"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    648..938
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cl21522"
                     /db_xref="CDD:473895"
     misc_feature    999..1271
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1236..1241,1245..1250)
                     /gene="CSF3R"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1578..1832
                     /gene="CSF3R"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1869..2123
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
ORIGIN      
        1 ggggctgccc gcgccagctt caacgatgca agggcgggaa ggaggctggg caggtgttgc
       61 aatccgcagc ccctgcgcct gtcagaggcc gagccattaa cgacagggct ggggagagca
      121 gccgggctgt ggctgttttc aggaacttgc cttgaagagg agagcagagt ccagggaggc
      181 caggcgggcg cccagccgca ggctccaaca tggggtaact gaggctcaga aaagtgaagt
      241 aacttgtcca aggtcaccaa gctggtgagc accaagccgg cactatggcg gggctgggag
      301 cctggaacct agcgagagct gctctgatca tcttgctgct ccccagaagc ctggagcagt
      361 gcgggcacat cagcctctca gcccccatcg tccgcctggg ggatcccatc acagcctcct
      421 gcaccatcag ccagaactgc agccacctgg actcggaatc gcacattgta tggaagttgg
      481 aagcagagct tcagcccggg gagaggcagc agtacctgcc gaatgggacc ctgcagtcca
      541 ccatcacctt gccccacctc aaccgctctc gggcccttct ctcctgctgc ctgcactggg
      601 gcaacagcct gcagatcctg gaccaggctg agctacaggc aggctaccct cccgccacac
      661 cccacaacct gtcctgcctc atgaacctca caaccaacag cctcacctgc cagtgggagc
      721 caggccccaa cacccacctg tccaccaact tcaccctgaa gagcttcaag agccggggca
      781 actgtcagag ccgggaggac tccatccccg actgcgtgcc tgaggacggg cagagccact
      841 gctccatccc ccgcaaacac ctacagctgt accagaacat gggcatctgg gtgcaggcca
      901 agaacgcgct gggaaccagc gtgtccccga agctgtgcct tgtccccatg gacgtcgtga
      961 aactggagcc ccccacactg tgggccctgg ggcccagccc tgaggtggcc ccaccccagc
     1021 caggctgcct gaggttgcgc tgggagacct ggaagccaag cctacacata gatcagaagt
     1081 gtgagctgcg ccaccagcct ctgcttggag aagccagctg ggacctggtg ggcgccctgc
     1141 cctccaggac cctccagtat gagctatgcg ggctcctccc atccacagcc tacgccctgc
     1201 agatgcgctg cacccgctgg cgcctgcctg gccactggag caactggagc cccagcctgg
     1261 agctgaccac cacacaacgg gcccccactg tcagaatgga cacatggtgg cggcagaggc
     1321 agctggaccc caggacggtg gacgtgcagc tgttctggca gccagtgccc ctggaggaag
     1381 acagcaggca gatccaaggg tacctggtct ccttgagacc ctcagaccag gctggggcag
     1441 acccaatact ctgcaacacc acggagctaa actgtacctt ccaactgcct tcagaagccc
     1501 gggaggtgat ccttgaggcc tataacacag ctgggacctc tcatcccacc ccagtggtct
     1561 tcttggagag cggaggccca cccctgggca gactccacac cgtggctcga gaccctcaca
     1621 gcctctgggt gggctgggag ccccccagcc ctcagcctcg gggctatgtc attgagtggg
     1681 gcctcggtcc ccccagcccc agcggcagcc ctaagacgtg gcggatggag cataatggaa
     1741 gcattgcagg gaccctgctg caggagaaca tcaggccctt tcagctctac gagatcactg
     1801 tgacccccct gtaccaggac accaaaggac cctcccagca catctatgct tactcccaag
     1861 agatggcccc ctcccatggc ccagagctgc atctaaggca cattggcaag acttgggccc
     1921 agctggagtg ggtacccgag gcccctgagc tggggaggag cccccttacc cactacacta
     1981 tcttctggac caatgctcag gaccggtcct tctccactgt cctgaacgcc tcctcccata
     2041 gctttgtcct ccgtggcctg gagccttcca gcttgtacca tgtccacctc atggctgcca
     2101 gccaggtgtg ggccaccaac agtacaagcc tcaccctgat gaccttggcc ctaggctttc
     2161 ccctcactct agaggagtct gagctgcaca tcctcctggg cctctttggc ctcctggtct
     2221 tgctcatctg cctctgtggg gctgcccagc tctgctgcag acccagcagg aagaatcccc
     2281 tctggccaag tgttccagac ccagcccaca gcagcctggg ttcctgggtg cctaccatca
     2341 caacggagga taccttccag ctgcccagcc ttcgggactc cagcatgcca cccatcacca
     2401 agatcacggt gctggaggag gaagagaaga agccaggacc ctgggagtcc aatgacagct
     2461 cagggacctg tggcctcccc agcctggtcc aggcctatgt gctccagggg gacccaagag
     2521 tacctcgtat gcagccccag ccccagtctg gcaccagtga ccaggtcctt tacgtgcagg
     2581 tgctgggcag ccccacaggc ccacggcctg ggcactacct ccgctgcgac tccactcagc
     2641 ccctcttggg gggcctcacc cccagcccca agtcctatga gaacctctgg ttccagacca
     2701 gccccctggg gaccccagag cccctagtcc caaacccgga ggatgactgt atctttgagc
     2761 cactgcttga cttccctctc ctgcaggggc tccgggtcag tggggtggag ggtctcgggg
     2821 gcttctaggg cttcctagaa ctccccacct gggcctgctt cttgataagc ctgggctatc
     2881 cagagaagag gaggtcagta agcccttcac taaaaacccc cagccccagg aaaggcagaa
     2941 agtctcccag tgtcccccta tctctggccc ctagcatccc tcccccatcc ccccaatttc
     3001 catgggctgg gcctcccact tcaaaggcca gagaatgttt tttcaagccc tgcccactag
     3061 ctttttgtac ttgtttccta taatttcagt ctcttaaact ggtttatggt ctga
//
LOCUS       XM_032614902            3060 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus colony stimulating factor 3 receptor
            (CSF3R), transcript variant X2, mRNA.
ACCESSION   XM_032614902
VERSION     XM_032614902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3060
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3060
                     /gene="CSF3R"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744796"
     CDS             231..2774
                     /gene="CSF3R"
                     /codon_start=1
                     /product="granulocyte colony-stimulating factor receptor
                     isoform X1"
                     /protein_id="XP_032470793.1"
                     /db_xref="GeneID:116744796"
                     /translation="MAGLGAWNLARAALIILLLPRSLEQCGHISLSAPIVRLGDPITA
                     SCTISQNCSHLDSESHIVWKLEAELQPGERQQYLPNGTLQSTITLPHLNRSRALLSCC
                     LHWGNSLQILDQAELQAGYPPATPHNLSCLMNLTTNSLTCQWEPGPNTHLSTNFTLKS
                     FKSRGNCQSREDSIPDCVPEDGQSHCSIPRKHLQLYQNMGIWVQAKNALGTSVSPKLC
                     LVPMDVVKLEPPTLWALGPSPEVAPPQPGCLRLRWETWKPSLHIDQKCELRHQPLLGE
                     ASWDLVGALPSRTLQYELCGLLPSTAYALQMRCTRWRLPGHWSNWSPSLELTTTQRAP
                     TVRMDTWWRQRQLDPRTVDVQLFWQPVPLEEDSRQIQGYLVSLRPSDQAGADPILCNT
                     TELNCTFQLPSEAREVILEAYNTAGTSHPTPVVFLESGGPPLGRLHTVARDPHSLWVG
                     WEPPSPQPRGYVIEWGLGPPSPSGSPKTWRMEHNGSIAGTLLQENIRPFQLYEITVTP
                     LYQDTKGPSQHIYAYSQEMAPSHGPELHLRHIGKTWAQLEWVPEAPELGRSPLTHYTI
                     FWTNAQDRSFSTVLNASSHSFVLRGLEPSSLYHVHLMAASQVWATNSTSLTLMTLALG
                     FPLTLEESELHILLGLFGLLVLLICLCGAAQLCCRPSRKNPLWPSVPDPAHSSLGSWV
                     PTITTEDTFQLPSLRDSSMPPITKITVLEEEEKKPGPWESNDSSGTCGLPSLVQAYVL
                     QGDPRVPRMQPQPQSGTSDQVLYVQVLGSPTGPRPGHYLRCDSTQPLLGGLTPSPKSY
                     ENLWFQTSPLGTPEPLVPNPEDDCIFEPLLDFPLLQGLRVSGVEGLGGF"
     misc_feature    300..560
                     /gene="CSF3R"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    594..884
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cl21522"
                     /db_xref="CDD:473895"
     misc_feature    945..1217
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1182..1187,1191..1196)
                     /gene="CSF3R"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1524..1778
                     /gene="CSF3R"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1815..2069
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
ORIGIN      
        1 aggggctgcc cgcgccagct tcaacgatgc aagggcggga aggaggctgg gcaggtgttg
       61 caatccgcag cccctgcgcc tgtcagaggc cgagccatta acgacagggc tggggagagc
      121 agccgggctg tggctgtttt caggaacttg ccttgaagag gagagcagag tccagggagg
      181 ccaggcgggc gcccagccgc aggctccaac gtgagcacca agccggcact atggcggggc
      241 tgggagcctg gaacctagcg agagctgctc tgatcatctt gctgctcccc agaagcctgg
      301 agcagtgcgg gcacatcagc ctctcagccc ccatcgtccg cctgggggat cccatcacag
      361 cctcctgcac catcagccag aactgcagcc acctggactc ggaatcgcac attgtatgga
      421 agttggaagc agagcttcag cccggggaga ggcagcagta cctgccgaat gggaccctgc
      481 agtccaccat caccttgccc cacctcaacc gctctcgggc ccttctctcc tgctgcctgc
      541 actggggcaa cagcctgcag atcctggacc aggctgagct acaggcaggc taccctcccg
      601 ccacacccca caacctgtcc tgcctcatga acctcacaac caacagcctc acctgccagt
      661 gggagccagg ccccaacacc cacctgtcca ccaacttcac cctgaagagc ttcaagagcc
      721 ggggcaactg tcagagccgg gaggactcca tccccgactg cgtgcctgag gacgggcaga
      781 gccactgctc catcccccgc aaacacctac agctgtacca gaacatgggc atctgggtgc
      841 aggccaagaa cgcgctggga accagcgtgt ccccgaagct gtgccttgtc cccatggacg
      901 tcgtgaaact ggagcccccc acactgtggg ccctggggcc cagccctgag gtggccccac
      961 cccagccagg ctgcctgagg ttgcgctggg agacctggaa gccaagccta cacatagatc
     1021 agaagtgtga gctgcgccac cagcctctgc ttggagaagc cagctgggac ctggtgggcg
     1081 ccctgccctc caggaccctc cagtatgagc tatgcgggct cctcccatcc acagcctacg
     1141 ccctgcagat gcgctgcacc cgctggcgcc tgcctggcca ctggagcaac tggagcccca
     1201 gcctggagct gaccaccaca caacgggccc ccactgtcag aatggacaca tggtggcggc
     1261 agaggcagct ggaccccagg acggtggacg tgcagctgtt ctggcagcca gtgcccctgg
     1321 aggaagacag caggcagatc caagggtacc tggtctcctt gagaccctca gaccaggctg
     1381 gggcagaccc aatactctgc aacaccacgg agctaaactg taccttccaa ctgccttcag
     1441 aagcccggga ggtgatcctt gaggcctata acacagctgg gacctctcat cccaccccag
     1501 tggtcttctt ggagagcgga ggcccacccc tgggcagact ccacaccgtg gctcgagacc
     1561 ctcacagcct ctgggtgggc tgggagcccc ccagccctca gcctcggggc tatgtcattg
     1621 agtggggcct cggtcccccc agccccagcg gcagccctaa gacgtggcgg atggagcata
     1681 atggaagcat tgcagggacc ctgctgcagg agaacatcag gccctttcag ctctacgaga
     1741 tcactgtgac ccccctgtac caggacacca aaggaccctc ccagcacatc tatgcttact
     1801 cccaagagat ggccccctcc catggcccag agctgcatct aaggcacatt ggcaagactt
     1861 gggcccagct ggagtgggta cccgaggccc ctgagctggg gaggagcccc cttacccact
     1921 acactatctt ctggaccaat gctcaggacc ggtccttctc cactgtcctg aacgcctcct
     1981 cccatagctt tgtcctccgt ggcctggagc cttccagctt gtaccatgtc cacctcatgg
     2041 ctgccagcca ggtgtgggcc accaacagta caagcctcac cctgatgacc ttggccctag
     2101 gctttcccct cactctagag gagtctgagc tgcacatcct cctgggcctc tttggcctcc
     2161 tggtcttgct catctgcctc tgtggggctg cccagctctg ctgcagaccc agcaggaaga
     2221 atcccctctg gccaagtgtt ccagacccag cccacagcag cctgggttcc tgggtgccta
     2281 ccatcacaac ggaggatacc ttccagctgc ccagccttcg ggactccagc atgccaccca
     2341 tcaccaagat cacggtgctg gaggaggaag agaagaagcc aggaccctgg gagtccaatg
     2401 acagctcagg gacctgtggc ctccccagcc tggtccaggc ctatgtgctc cagggggacc
     2461 caagagtacc tcgtatgcag ccccagcccc agtctggcac cagtgaccag gtcctttacg
     2521 tgcaggtgct gggcagcccc acaggcccac ggcctgggca ctacctccgc tgcgactcca
     2581 ctcagcccct cttggggggc ctcaccccca gccccaagtc ctatgagaac ctctggttcc
     2641 agaccagccc cctggggacc ccagagcccc tagtcccaaa cccggaggat gactgtatct
     2701 ttgagccact gcttgacttc cctctcctgc aggggctccg ggtcagtggg gtggagggtc
     2761 tcgggggctt ctagggcttc ctagaactcc ccacctgggc ctgcttcttg ataagcctgg
     2821 gctatccaga gaagaggagg tcagtaagcc cttcactaaa aacccccagc cccaggaaag
     2881 gcagaaagtc tcccagtgtc cccctatctc tggcccctag catccctccc ccatcccccc
     2941 aatttccatg ggctgggcct cccacttcaa aggccagaga atgttttttc aagccctgcc
     3001 cactagcttt ttgtacttgt ttcctataat ttcagtctct taaactggtt tatggtctga
//
LOCUS       XM_032614911            3113 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus colony stimulating factor 3 receptor
            (CSF3R), transcript variant X3, mRNA.
ACCESSION   XM_032614911
VERSION     XM_032614911.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3113
                     /gene="CSF3R"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744796"
     CDS             287..2827
                     /gene="CSF3R"
                     /codon_start=1
                     /product="granulocyte colony-stimulating factor receptor
                     isoform X2"
                     /protein_id="XP_032470802.1"
                     /db_xref="GeneID:116744796"
                     /translation="MAGLGAWNLARAALIILLLPRSLEQCGHISLSAPIVRLGDPITA
                     SCTISQNCSHLDSESHIVWKLEAELQPGERQQYLPNGTLQSTITLPHLNRSRALLSCC
                     LHWGNSLQILDQAELQAGYPPATPHNLSCLMNLTTNSLTCQWEPGPNTHLSTNFTLKS
                     FKSRGNCQSREDSIPDCVPEDGQSHCSIPRKHLQLYQNMGIWVQAKNALGTSVSPKLC
                     LVPMDVVKLEPPTLWALGPSPEVAPPQPGCLRLRWETWKPSLHIDQKCELRHQPLLGE
                     ASWDLVGALPSRTLQYELCGLLPSTAYALQMRCTRWRLPGHWSNWSPSLELTTTQRAP
                     TVRMDTWWRQRQLDPRTVDVQLFWQPVPLEEDSRQIQGYLVSLRPSDQAGADPILCNT
                     TELNCTFQLPSEAREVILEAYNTAGTSHPTPVVFLESGGPPLGRLHTVARDPHSLWVG
                     WEPPSPQPRGYVIEWGLGPPSPSGSPKTWRMEHNGSIAGTLLQENIRPFQLYEITVTP
                     LYQDTKGPSQHIYAYSQEMAPSHGPELHLRHIGKTWAQLEWVPEAPELGRSPLTHYTI
                     FWTNAQDRSFSTVLNASSHSFVLRGLEPSSLYHVHLMAASQVWATNSTSLTLMTLALG
                     FPLTLEESELHILLGLFGLLVLLICLCGAAQLCCRPRKNPLWPSVPDPAHSSLGSWVP
                     TITTEDTFQLPSLRDSSMPPITKITVLEEEEKKPGPWESNDSSGTCGLPSLVQAYVLQ
                     GDPRVPRMQPQPQSGTSDQVLYVQVLGSPTGPRPGHYLRCDSTQPLLGGLTPSPKSYE
                     NLWFQTSPLGTPEPLVPNPEDDCIFEPLLDFPLLQGLRVSGVEGLGGF"
     misc_feature    356..616
                     /gene="CSF3R"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    650..940
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cl21522"
                     /db_xref="CDD:473895"
     misc_feature    1001..1273
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1238..1243,1247..1252)
                     /gene="CSF3R"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1580..1834
                     /gene="CSF3R"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1871..2125
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
ORIGIN      
        1 aaggggctgc ccgcgccagc ttcaacgatg caagggcggg aaggaggctg ggcaggtgtt
       61 gcaatccgca gcccctgcgc ctgtcagagg ccgagccatt aacgacaggg ctggggagag
      121 cagccgggct gtggctgttt tcaggaactt gccttgaaga ggagagcaga gtccagggag
      181 gccaggcggg cgcccagccg caggctccaa catggggtaa ctgaggctca gaaaagtgaa
      241 gtaacttgtc caaggtcacc aagctggtga gcaccaagcc ggcactatgg cggggctggg
      301 agcctggaac ctagcgagag ctgctctgat catcttgctg ctccccagaa gcctggagca
      361 gtgcgggcac atcagcctct cagcccccat cgtccgcctg ggggatccca tcacagcctc
      421 ctgcaccatc agccagaact gcagccacct ggactcggaa tcgcacattg tatggaagtt
      481 ggaagcagag cttcagcccg gggagaggca gcagtacctg ccgaatggga ccctgcagtc
      541 caccatcacc ttgccccacc tcaaccgctc tcgggccctt ctctcctgct gcctgcactg
      601 gggcaacagc ctgcagatcc tggaccaggc tgagctacag gcaggctacc ctcccgccac
      661 accccacaac ctgtcctgcc tcatgaacct cacaaccaac agcctcacct gccagtggga
      721 gccaggcccc aacacccacc tgtccaccaa cttcaccctg aagagcttca agagccgggg
      781 caactgtcag agccgggagg actccatccc cgactgcgtg cctgaggacg ggcagagcca
      841 ctgctccatc ccccgcaaac acctacagct gtaccagaac atgggcatct gggtgcaggc
      901 caagaacgcg ctgggaacca gcgtgtcccc gaagctgtgc cttgtcccca tggacgtcgt
      961 gaaactggag ccccccacac tgtgggccct ggggcccagc cctgaggtgg ccccacccca
     1021 gccaggctgc ctgaggttgc gctgggagac ctggaagcca agcctacaca tagatcagaa
     1081 gtgtgagctg cgccaccagc ctctgcttgg agaagccagc tgggacctgg tgggcgccct
     1141 gccctccagg accctccagt atgagctatg cgggctcctc ccatccacag cctacgccct
     1201 gcagatgcgc tgcacccgct ggcgcctgcc tggccactgg agcaactgga gccccagcct
     1261 ggagctgacc accacacaac gggcccccac tgtcagaatg gacacatggt ggcggcagag
     1321 gcagctggac cccaggacgg tggacgtgca gctgttctgg cagccagtgc ccctggagga
     1381 agacagcagg cagatccaag ggtacctggt ctccttgaga ccctcagacc aggctggggc
     1441 agacccaata ctctgcaaca ccacggagct aaactgtacc ttccaactgc cttcagaagc
     1501 ccgggaggtg atccttgagg cctataacac agctgggacc tctcatccca ccccagtggt
     1561 cttcttggag agcggaggcc cacccctggg cagactccac accgtggctc gagaccctca
     1621 cagcctctgg gtgggctggg agccccccag ccctcagcct cggggctatg tcattgagtg
     1681 gggcctcggt ccccccagcc ccagcggcag ccctaagacg tggcggatgg agcataatgg
     1741 aagcattgca gggaccctgc tgcaggagaa catcaggccc tttcagctct acgagatcac
     1801 tgtgaccccc ctgtaccagg acaccaaagg accctcccag cacatctatg cttactccca
     1861 agagatggcc ccctcccatg gcccagagct gcatctaagg cacattggca agacttgggc
     1921 ccagctggag tgggtacccg aggcccctga gctggggagg agccccctta cccactacac
     1981 tatcttctgg accaatgctc aggaccggtc cttctccact gtcctgaacg cctcctccca
     2041 tagctttgtc ctccgtggcc tggagccttc cagcttgtac catgtccacc tcatggctgc
     2101 cagccaggtg tgggccacca acagtacaag cctcaccctg atgaccttgg ccctaggctt
     2161 tcccctcact ctagaggagt ctgagctgca catcctcctg ggcctctttg gcctcctggt
     2221 cttgctcatc tgcctctgtg gggctgccca gctctgctgc agacccagga agaatcccct
     2281 ctggccaagt gttccagacc cagcccacag cagcctgggt tcctgggtgc ctaccatcac
     2341 aacggaggat accttccagc tgcccagcct tcgggactcc agcatgccac ccatcaccaa
     2401 gatcacggtg ctggaggagg aagagaagaa gccaggaccc tgggagtcca atgacagctc
     2461 agggacctgt ggcctcccca gcctggtcca ggcctatgtg ctccaggggg acccaagagt
     2521 acctcgtatg cagccccagc cccagtctgg caccagtgac caggtccttt acgtgcaggt
     2581 gctgggcagc cccacaggcc cacggcctgg gcactacctc cgctgcgact ccactcagcc
     2641 cctcttgggg ggcctcaccc ccagccccaa gtcctatgag aacctctggt tccagaccag
     2701 ccccctgggg accccagagc ccctagtccc aaacccggag gatgactgta tctttgagcc
     2761 actgcttgac ttccctctcc tgcaggggct ccgggtcagt ggggtggagg gtctcggggg
     2821 cttctagggc ttcctagaac tccccacctg ggcctgcttc ttgataagcc tgggctatcc
     2881 agagaagagg aggtcagtaa gcccttcact aaaaaccccc agccccagga aaggcagaaa
     2941 gtctcccagt gtccccctat ctctggcccc tagcatccct cccccatccc cccaatttcc
     3001 atgggctggg cctcccactt caaaggccag agaatgtttt ttcaagccct gcccactagc
     3061 tttttgtact tgtttcctat aatttcagtc tcttaaactg gtttatggtc tga
//
LOCUS       XM_032614922            3089 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus colony stimulating factor 3 receptor
            (CSF3R), transcript variant X4, mRNA.
ACCESSION   XM_032614922
VERSION     XM_032614922.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3089
                     /gene="CSF3R"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744796"
     CDS             278..2803
                     /gene="CSF3R"
                     /codon_start=1
                     /product="granulocyte colony-stimulating factor receptor
                     isoform X3"
                     /protein_id="XP_032470813.1"
                     /db_xref="GeneID:116744796"
                     /translation="MAGLGAWNLARAALIILLLPRSLEQCGHISLSAPIVRLGDPITA
                     SCTISQNCSHLDSESHIVWKLEAELQPGERQQYLPNGTLQSTITLPHLNRSRALLSCC
                     LHWGNSLQILDQAELQAGYPPATPHNLSCLMNLTTNSLTCQWEPGPNTHLSTNFTLKS
                     FKSRGNCQSREDSIPDCVPEDGQSHCSIPRKHLQLYQNMGIWVQAKNALGTSVSPKLC
                     LVPMDVVKLEPPTLWALGPSPEVAPPQPGCLRLRWETWKPSLHIDQKCELRHQPLLGE
                     ASWDLVGALPSRTLQYELCGLLPSTAYALQMRCTRWRLPGHWSNWSPSLELTTTQRAP
                     TVRMDTWWRQRQLDPRTVDVQLFWQPVPLEEDSRQIQGYLVSLRPSDQAGADPILCNT
                     TELNCTFQLPSEAREVILEAYNTAGTSHPTPVVFLESGGPPLGRLHTVARDPHSLWVG
                     WEPPSPQPRGYVIEWGLGPPSPSGSPKTWRMEHNGSIAGTLLQENIRPFQLYEITVTP
                     LYQDTKGPSQHIYAYSQEMAPSHGPELHLRHIGKTWAQLEWVPEAPELGRSPLTHYTI
                     FWTNAQDRSFSTVLNASSHSFVLRGLEPSSLYHVHLMAASQVWATNSTSLTLMTLALE
                     ESELHILLGLFGLLVLLICLCGAAQLCCRPSRKNPLWPSVPDPAHSSLGSWVPTITTE
                     DTFQLPSLRDSSMPPITKITVLEEEEKKPGPWESNDSSGTCGLPSLVQAYVLQGDPRV
                     PRMQPQPQSGTSDQVLYVQVLGSPTGPRPGHYLRCDSTQPLLGGLTPSPKSYENLWFQ
                     TSPLGTPEPLVPNPEDDCIFEPLLDFPLLQGLRVSGVEGLGGF"
     misc_feature    347..607
                     /gene="CSF3R"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    641..931
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cl21522"
                     /db_xref="CDD:473895"
     misc_feature    992..1264
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1229..1234,1238..1243)
                     /gene="CSF3R"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1571..1825
                     /gene="CSF3R"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1862..2116
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
ORIGIN      
        1 cccgcgccag cttcaacgat gcaagggcgg gaaggaggct gggcaggtgt tgcaatccgc
       61 agcccctgcg cctgtcagag gccgagccat taacgacagg gctggggaga gcagccgggc
      121 tgtggctgtt ttcaggaact tgccttgaag aggagagcag agtccaggga ggccaggcgg
      181 gcgcccagcc gcaggctcca acatggggta actgaggctc agaaaagtga agtaacttgt
      241 ccaaggtcac caagctggtg agcaccaagc cggcactatg gcggggctgg gagcctggaa
      301 cctagcgaga gctgctctga tcatcttgct gctccccaga agcctggagc agtgcgggca
      361 catcagcctc tcagccccca tcgtccgcct gggggatccc atcacagcct cctgcaccat
      421 cagccagaac tgcagccacc tggactcgga atcgcacatt gtatggaagt tggaagcaga
      481 gcttcagccc ggggagaggc agcagtacct gccgaatggg accctgcagt ccaccatcac
      541 cttgccccac ctcaaccgct ctcgggccct tctctcctgc tgcctgcact ggggcaacag
      601 cctgcagatc ctggaccagg ctgagctaca ggcaggctac cctcccgcca caccccacaa
      661 cctgtcctgc ctcatgaacc tcacaaccaa cagcctcacc tgccagtggg agccaggccc
      721 caacacccac ctgtccacca acttcaccct gaagagcttc aagagccggg gcaactgtca
      781 gagccgggag gactccatcc ccgactgcgt gcctgaggac gggcagagcc actgctccat
      841 cccccgcaaa cacctacagc tgtaccagaa catgggcatc tgggtgcagg ccaagaacgc
      901 gctgggaacc agcgtgtccc cgaagctgtg ccttgtcccc atggacgtcg tgaaactgga
      961 gccccccaca ctgtgggccc tggggcccag ccctgaggtg gccccacccc agccaggctg
     1021 cctgaggttg cgctgggaga cctggaagcc aagcctacac atagatcaga agtgtgagct
     1081 gcgccaccag cctctgcttg gagaagccag ctgggacctg gtgggcgccc tgccctccag
     1141 gaccctccag tatgagctat gcgggctcct cccatccaca gcctacgccc tgcagatgcg
     1201 ctgcacccgc tggcgcctgc ctggccactg gagcaactgg agccccagcc tggagctgac
     1261 caccacacaa cgggccccca ctgtcagaat ggacacatgg tggcggcaga ggcagctgga
     1321 ccccaggacg gtggacgtgc agctgttctg gcagccagtg cccctggagg aagacagcag
     1381 gcagatccaa gggtacctgg tctccttgag accctcagac caggctgggg cagacccaat
     1441 actctgcaac accacggagc taaactgtac cttccaactg ccttcagaag cccgggaggt
     1501 gatccttgag gcctataaca cagctgggac ctctcatccc accccagtgg tcttcttgga
     1561 gagcggaggc ccacccctgg gcagactcca caccgtggct cgagaccctc acagcctctg
     1621 ggtgggctgg gagcccccca gccctcagcc tcggggctat gtcattgagt ggggcctcgg
     1681 tccccccagc cccagcggca gccctaagac gtggcggatg gagcataatg gaagcattgc
     1741 agggaccctg ctgcaggaga acatcaggcc ctttcagctc tacgagatca ctgtgacccc
     1801 cctgtaccag gacaccaaag gaccctccca gcacatctat gcttactccc aagagatggc
     1861 cccctcccat ggcccagagc tgcatctaag gcacattggc aagacttggg cccagctgga
     1921 gtgggtaccc gaggcccctg agctggggag gagccccctt acccactaca ctatcttctg
     1981 gaccaatgct caggaccggt ccttctccac tgtcctgaac gcctcctccc atagctttgt
     2041 cctccgtggc ctggagcctt ccagcttgta ccatgtccac ctcatggctg ccagccaggt
     2101 gtgggccacc aacagtacaa gcctcaccct gatgaccttg gccctagagg agtctgagct
     2161 gcacatcctc ctgggcctct ttggcctcct ggtcttgctc atctgcctct gtggggctgc
     2221 ccagctctgc tgcagaccca gcaggaagaa tcccctctgg ccaagtgttc cagacccagc
     2281 ccacagcagc ctgggttcct gggtgcctac catcacaacg gaggatacct tccagctgcc
     2341 cagccttcgg gactccagca tgccacccat caccaagatc acggtgctgg aggaggaaga
     2401 gaagaagcca ggaccctggg agtccaatga cagctcaggg acctgtggcc tccccagcct
     2461 ggtccaggcc tatgtgctcc agggggaccc aagagtacct cgtatgcagc cccagcccca
     2521 gtctggcacc agtgaccagg tcctttacgt gcaggtgctg ggcagcccca caggcccacg
     2581 gcctgggcac tacctccgct gcgactccac tcagcccctc ttggggggcc tcacccccag
     2641 ccccaagtcc tatgagaacc tctggttcca gaccagcccc ctggggaccc cagagcccct
     2701 agtcccaaac ccggaggatg actgtatctt tgagccactg cttgacttcc ctctcctgca
     2761 ggggctccgg gtcagtgggg tggagggtct cgggggcttc tagggcttcc tagaactccc
     2821 cacctgggcc tgcttcttga taagcctggg ctatccagag aagaggaggt cagtaagccc
     2881 ttcactaaaa acccccagcc ccaggaaagg cagaaagtct cccagtgtcc ccctatctct
     2941 ggcccctagc atccctcccc catcccccca atttccatgg gctgggcctc ccacttcaaa
     3001 ggccagagaa tgttttttca agccctgccc actagctttt tgtacttgtt tcctataatt
     3061 tcagtctctt aaactggttt atggtctga
//
LOCUS       XM_032614931            3089 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus colony stimulating factor 3 receptor
            (CSF3R), transcript variant X5, mRNA.
ACCESSION   XM_032614931
VERSION     XM_032614931.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3089
                     /gene="CSF3R"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744796"
     CDS             281..2803
                     /gene="CSF3R"
                     /codon_start=1
                     /product="granulocyte colony-stimulating factor receptor
                     isoform X4"
                     /protein_id="XP_032470822.1"
                     /db_xref="GeneID:116744796"
                     /translation="MAGLGAWNLARAALIILLLPRSLEQCGHISLSAPIVRLGDPITA
                     SCTISQNCSHLDSESHIVWKLEAELQPGERQQYLPNGTLQSTITLPHLNRSRALLSCC
                     LHWGNSLQILDQAELQAGYPPATPHNLSCLMNLTTNSLTCQWEPGPNTHLSTNFTLKS
                     FKSRGNCQSREDSIPDCVPEDGQSHCSIPRKHLQLYQNMGIWVQAKNALGTSVSPKLC
                     LVPMDVVKLEPPTLWALGPSPEVAPPQPGCLRLRWETWKPSLHIDQKCELRHQPLLGE
                     ASWDLVGALPSRTLQYELCGLLPSTAYALQMRCTRWRLPGHWSNWSPSLELTTTQRAP
                     TVRMDTWWRQRQLDPRTVDVQLFWQPVPLEEDSRQIQGYLVSLRPSDQAGADPILCNT
                     TELNCTFQLPSEAREVILEAYNTAGTSHPTPVVFLESGGPPLGRLHTVARDPHSLWVG
                     WEPPSPQPRGYVIEWGLGPPSPSGSPKTWRMEHNGSIAGTLLQENIRPFQLYEITVTP
                     LYQDTKGPSQHIYAYSQEMAPSHGPELHLRHIGKTWAQLEWVPEAPELGRSPLTHYTI
                     FWTNAQDRSFSTVLNASSHSFVLRGLEPSSLYHVHLMAASQVWATNSTSLTLMTLALE
                     ESELHILLGLFGLLVLLICLCGAAQLCCRPRKNPLWPSVPDPAHSSLGSWVPTITTED
                     TFQLPSLRDSSMPPITKITVLEEEEKKPGPWESNDSSGTCGLPSLVQAYVLQGDPRVP
                     RMQPQPQSGTSDQVLYVQVLGSPTGPRPGHYLRCDSTQPLLGGLTPSPKSYENLWFQT
                     SPLGTPEPLVPNPEDDCIFEPLLDFPLLQGLRVSGVEGLGGF"
     misc_feature    350..610
                     /gene="CSF3R"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    644..934
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cl21522"
                     /db_xref="CDD:473895"
     misc_feature    995..1267
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1232..1237,1241..1246)
                     /gene="CSF3R"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1574..1828
                     /gene="CSF3R"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1865..2119
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
ORIGIN      
        1 ctgcccgcgc cagcttcaac gatgcaaggg cgggaaggag gctgggcagg tgttgcaatc
       61 cgcagcccct gcgcctgtca gaggccgagc cattaacgac agggctgggg agagcagccg
      121 ggctgtggct gttttcagga acttgccttg aagaggagag cagagtccag ggaggccagg
      181 cgggcgccca gccgcaggct ccaacatggg gtaactgagg ctcagaaaag tgaagtaact
      241 tgtccaaggt caccaagctg gtgagcacca agccggcact atggcggggc tgggagcctg
      301 gaacctagcg agagctgctc tgatcatctt gctgctcccc agaagcctgg agcagtgcgg
      361 gcacatcagc ctctcagccc ccatcgtccg cctgggggat cccatcacag cctcctgcac
      421 catcagccag aactgcagcc acctggactc ggaatcgcac attgtatgga agttggaagc
      481 agagcttcag cccggggaga ggcagcagta cctgccgaat gggaccctgc agtccaccat
      541 caccttgccc cacctcaacc gctctcgggc ccttctctcc tgctgcctgc actggggcaa
      601 cagcctgcag atcctggacc aggctgagct acaggcaggc taccctcccg ccacacccca
      661 caacctgtcc tgcctcatga acctcacaac caacagcctc acctgccagt gggagccagg
      721 ccccaacacc cacctgtcca ccaacttcac cctgaagagc ttcaagagcc ggggcaactg
      781 tcagagccgg gaggactcca tccccgactg cgtgcctgag gacgggcaga gccactgctc
      841 catcccccgc aaacacctac agctgtacca gaacatgggc atctgggtgc aggccaagaa
      901 cgcgctggga accagcgtgt ccccgaagct gtgccttgtc cccatggacg tcgtgaaact
      961 ggagcccccc acactgtggg ccctggggcc cagccctgag gtggccccac cccagccagg
     1021 ctgcctgagg ttgcgctggg agacctggaa gccaagccta cacatagatc agaagtgtga
     1081 gctgcgccac cagcctctgc ttggagaagc cagctgggac ctggtgggcg ccctgccctc
     1141 caggaccctc cagtatgagc tatgcgggct cctcccatcc acagcctacg ccctgcagat
     1201 gcgctgcacc cgctggcgcc tgcctggcca ctggagcaac tggagcccca gcctggagct
     1261 gaccaccaca caacgggccc ccactgtcag aatggacaca tggtggcggc agaggcagct
     1321 ggaccccagg acggtggacg tgcagctgtt ctggcagcca gtgcccctgg aggaagacag
     1381 caggcagatc caagggtacc tggtctcctt gagaccctca gaccaggctg gggcagaccc
     1441 aatactctgc aacaccacgg agctaaactg taccttccaa ctgccttcag aagcccggga
     1501 ggtgatcctt gaggcctata acacagctgg gacctctcat cccaccccag tggtcttctt
     1561 ggagagcgga ggcccacccc tgggcagact ccacaccgtg gctcgagacc ctcacagcct
     1621 ctgggtgggc tgggagcccc ccagccctca gcctcggggc tatgtcattg agtggggcct
     1681 cggtcccccc agccccagcg gcagccctaa gacgtggcgg atggagcata atggaagcat
     1741 tgcagggacc ctgctgcagg agaacatcag gccctttcag ctctacgaga tcactgtgac
     1801 ccccctgtac caggacacca aaggaccctc ccagcacatc tatgcttact cccaagagat
     1861 ggccccctcc catggcccag agctgcatct aaggcacatt ggcaagactt gggcccagct
     1921 ggagtgggta cccgaggccc ctgagctggg gaggagcccc cttacccact acactatctt
     1981 ctggaccaat gctcaggacc ggtccttctc cactgtcctg aacgcctcct cccatagctt
     2041 tgtcctccgt ggcctggagc cttccagctt gtaccatgtc cacctcatgg ctgccagcca
     2101 ggtgtgggcc accaacagta caagcctcac cctgatgacc ttggccctag aggagtctga
     2161 gctgcacatc ctcctgggcc tctttggcct cctggtcttg ctcatctgcc tctgtggggc
     2221 tgcccagctc tgctgcagac ccaggaagaa tcccctctgg ccaagtgttc cagacccagc
     2281 ccacagcagc ctgggttcct gggtgcctac catcacaacg gaggatacct tccagctgcc
     2341 cagccttcgg gactccagca tgccacccat caccaagatc acggtgctgg aggaggaaga
     2401 gaagaagcca ggaccctggg agtccaatga cagctcaggg acctgtggcc tccccagcct
     2461 ggtccaggcc tatgtgctcc agggggaccc aagagtacct cgtatgcagc cccagcccca
     2521 gtctggcacc agtgaccagg tcctttacgt gcaggtgctg ggcagcccca caggcccacg
     2581 gcctgggcac tacctccgct gcgactccac tcagcccctc ttggggggcc tcacccccag
     2641 ccccaagtcc tatgagaacc tctggttcca gaccagcccc ctggggaccc cagagcccct
     2701 agtcccaaac ccggaggatg actgtatctt tgagccactg cttgacttcc ctctcctgca
     2761 ggggctccgg gtcagtgggg tggagggtct cgggggcttc tagggcttcc tagaactccc
     2821 cacctgggcc tgcttcttga taagcctggg ctatccagag aagaggaggt cagtaagccc
     2881 ttcactaaaa acccccagcc ccaggaaagg cagaaagtct cccagtgtcc ccctatctct
     2941 ggcccctagc atccctcccc catcccccca atttccatgg gctgggcctc ccacttcaaa
     3001 ggccagagaa tgttttttca agccctgccc actagctttt tgtacttgtt tcctataatt
     3061 tcagtctctt aaactggttt atggtctga
//
LOCUS       XM_032614941            2976 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus colony stimulating factor 3 receptor
            (CSF3R), transcript variant X6, mRNA.
ACCESSION   XM_032614941
VERSION     XM_032614941.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2976
                     /gene="CSF3R"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744796"
     CDS             294..2690
                     /gene="CSF3R"
                     /codon_start=1
                     /product="granulocyte colony-stimulating factor receptor
                     isoform X5"
                     /protein_id="XP_032470832.1"
                     /db_xref="GeneID:116744796"
                     /translation="MAGLGAWNLARAALIILLLPRSLEQCGHISLSAPIVRLGDPITA
                     SCTISQNCSHLDSESHIVWKLEAELQPGERQQYLPNGTLQSTITLPHLNRSRALLSCC
                     LHWGNSLQILDQAELQAGYPPATPHNLSCLMNLTTNSLTCQWEPGPNTHLSTNFTLKS
                     FKSRGNCQSREDSIPDCVPEDGQSHCSIPRKHLQLYQNMGIWVQAKNALGTSVSPKLC
                     LVPMDVVKLEPPTLWALGPSPEVAPPQPGCLRLRWETWKPSLHIDQKCELRHQPLLGE
                     ASWDLVGALPSRTLQYELCGLLPSTAYALQMRCTRWRLPGHWSNWSPSLELTTTQRAP
                     TVRMDTWWRQRQLDPRTVDVQLFWQPVPLEEDSRQIQGYLVSLRPSDQAGADPILCNT
                     TELNCTFQLPSEAREVILEAYNTAGTSHPTPVVFLESGGPPLGRLHTVARDPHSLWVG
                     WEPPSPQPRGYVIEWGLGPPSPSGSPKTWRMEHNGSIAGTLLQENIRPFQLYEITVTP
                     LYQDTKGPSQHIYAYSQEMATVLNASSHSFVLRGLEPSSLYHVHLMAASQVWATNSTS
                     LTLMTLALGFPLTLEESELHILLGLFGLLVLLICLCGAAQLCCRPSRKNPLWPSVPDP
                     AHSSLGSWVPTITTEDTFQLPSLRDSSMPPITKITVLEEEEKKPGPWESNDSSGTCGL
                     PSLVQAYVLQGDPRVPRMQPQPQSGTSDQVLYVQVLGSPTGPRPGHYLRCDSTQPLLG
                     GLTPSPKSYENLWFQTSPLGTPEPLVPNPEDDCIFEPLLDFPLLQGLRVSGVEGLGGF
                     "
     misc_feature    363..623
                     /gene="CSF3R"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    657..947
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cl21522"
                     /db_xref="CDD:473895"
     misc_feature    1008..1280
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1245..1250,1254..1259)
                     /gene="CSF3R"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1587..1841
                     /gene="CSF3R"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
ORIGIN      
        1 tgggaggaag gggctgcccg cgccagcttc aacgatgcaa gggcgggaag gaggctgggc
       61 aggtgttgca atccgcagcc cctgcgcctg tcagaggccg agccattaac gacagggctg
      121 gggagagcag ccgggctgtg gctgttttca ggaacttgcc ttgaagagga gagcagagtc
      181 cagggaggcc aggcgggcgc ccagccgcag gctccaacat ggggtaactg aggctcagaa
      241 aagtgaagta acttgtccaa ggtcaccaag ctggtgagca ccaagccggc actatggcgg
      301 ggctgggagc ctggaaccta gcgagagctg ctctgatcat cttgctgctc cccagaagcc
      361 tggagcagtg cgggcacatc agcctctcag cccccatcgt ccgcctgggg gatcccatca
      421 cagcctcctg caccatcagc cagaactgca gccacctgga ctcggaatcg cacattgtat
      481 ggaagttgga agcagagctt cagcccgggg agaggcagca gtacctgccg aatgggaccc
      541 tgcagtccac catcaccttg ccccacctca accgctctcg ggcccttctc tcctgctgcc
      601 tgcactgggg caacagcctg cagatcctgg accaggctga gctacaggca ggctaccctc
      661 ccgccacacc ccacaacctg tcctgcctca tgaacctcac aaccaacagc ctcacctgcc
      721 agtgggagcc aggccccaac acccacctgt ccaccaactt caccctgaag agcttcaaga
      781 gccggggcaa ctgtcagagc cgggaggact ccatccccga ctgcgtgcct gaggacgggc
      841 agagccactg ctccatcccc cgcaaacacc tacagctgta ccagaacatg ggcatctggg
      901 tgcaggccaa gaacgcgctg ggaaccagcg tgtccccgaa gctgtgcctt gtccccatgg
      961 acgtcgtgaa actggagccc cccacactgt gggccctggg gcccagccct gaggtggccc
     1021 caccccagcc aggctgcctg aggttgcgct gggagacctg gaagccaagc ctacacatag
     1081 atcagaagtg tgagctgcgc caccagcctc tgcttggaga agccagctgg gacctggtgg
     1141 gcgccctgcc ctccaggacc ctccagtatg agctatgcgg gctcctccca tccacagcct
     1201 acgccctgca gatgcgctgc acccgctggc gcctgcctgg ccactggagc aactggagcc
     1261 ccagcctgga gctgaccacc acacaacggg cccccactgt cagaatggac acatggtggc
     1321 ggcagaggca gctggacccc aggacggtgg acgtgcagct gttctggcag ccagtgcccc
     1381 tggaggaaga cagcaggcag atccaagggt acctggtctc cttgagaccc tcagaccagg
     1441 ctggggcaga cccaatactc tgcaacacca cggagctaaa ctgtaccttc caactgcctt
     1501 cagaagcccg ggaggtgatc cttgaggcct ataacacagc tgggacctct catcccaccc
     1561 cagtggtctt cttggagagc ggaggcccac ccctgggcag actccacacc gtggctcgag
     1621 accctcacag cctctgggtg ggctgggagc cccccagccc tcagcctcgg ggctatgtca
     1681 ttgagtgggg cctcggtccc cccagcccca gcggcagccc taagacgtgg cggatggagc
     1741 ataatggaag cattgcaggg accctgctgc aggagaacat caggcccttt cagctctacg
     1801 agatcactgt gacccccctg taccaggaca ccaaaggacc ctcccagcac atctatgctt
     1861 actcccaaga gatggccact gtcctgaacg cctcctccca tagctttgtc ctccgtggcc
     1921 tggagccttc cagcttgtac catgtccacc tcatggctgc cagccaggtg tgggccacca
     1981 acagtacaag cctcaccctg atgaccttgg ccctaggctt tcccctcact ctagaggagt
     2041 ctgagctgca catcctcctg ggcctctttg gcctcctggt cttgctcatc tgcctctgtg
     2101 gggctgccca gctctgctgc agacccagca ggaagaatcc cctctggcca agtgttccag
     2161 acccagccca cagcagcctg ggttcctggg tgcctaccat cacaacggag gataccttcc
     2221 agctgcccag ccttcgggac tccagcatgc cacccatcac caagatcacg gtgctggagg
     2281 aggaagagaa gaagccagga ccctgggagt ccaatgacag ctcagggacc tgtggcctcc
     2341 ccagcctggt ccaggcctat gtgctccagg gggacccaag agtacctcgt atgcagcccc
     2401 agccccagtc tggcaccagt gaccaggtcc tttacgtgca ggtgctgggc agccccacag
     2461 gcccacggcc tgggcactac ctccgctgcg actccactca gcccctcttg gggggcctca
     2521 cccccagccc caagtcctat gagaacctct ggttccagac cagccccctg gggaccccag
     2581 agcccctagt cccaaacccg gaggatgact gtatctttga gccactgctt gacttccctc
     2641 tcctgcaggg gctccgggtc agtggggtgg agggtctcgg gggcttctag ggcttcctag
     2701 aactccccac ctgggcctgc ttcttgataa gcctgggcta tccagagaag aggaggtcag
     2761 taagcccttc actaaaaacc cccagcccca ggaaaggcag aaagtctccc agtgtccccc
     2821 tatctctggc ccctagcatc cctcccccat ccccccaatt tccatgggct gggcctccca
     2881 cttcaaaggc cagagaatgt tttttcaagc cctgcccact agctttttgt acttgtttcc
     2941 tataatttca gtctcttaaa ctggtttatg gtctga
//
LOCUS       XM_032614951            2998 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus colony stimulating factor 3 receptor
            (CSF3R), transcript variant X7, mRNA.
ACCESSION   XM_032614951
VERSION     XM_032614951.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2998
                     /gene="CSF3R"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744796"
     CDS             281..2611
                     /gene="CSF3R"
                     /codon_start=1
                     /product="granulocyte colony-stimulating factor receptor
                     isoform X6"
                     /protein_id="XP_032470842.1"
                     /db_xref="GeneID:116744796"
                     /translation="MAGLGAWNLARAALIILLLPRSLEQCGHISLSAPIVRLGDPITA
                     SCTISQNCSHLDSESHIVWKLEAELQPGERQQYLPNGTLQSTITLPHLNRSRALLSCC
                     LHWGNSLQILDQAELQAGYPPATPHNLSCLMNLTTNSLTCQWEPGPNTHLSTNFTLKS
                     FKSRGNCQSREDSIPDCVPEDGQSHCSIPRKHLQLYQNMGIWVQAKNALGTSVSPKLC
                     LVPMDVVKLEPPTLWALGPSPEVAPPQPGCLRLRWETWKPSLHIDQKCELRHQPLLGE
                     ASWDLVGALPSRTLQYELCGLLPSTAYALQMRCTRWRLPGHWSNWSPSLELTTTQRAP
                     TVRMDTWWRQRQLDPRTVDVQLFWQPVPLEEDSRQIQGYLVSLRPSDQAGADPILCNT
                     TELNCTFQLPSEAREVILEAYNTAGTSHPTPVVFLESGGPPLGRLHTVARDPHSLWVG
                     WEPPSPQPRGYVIEWGLGPPSPSGSPKTWRMEHNGSIAGTLLQENIRPFQLYEITVTP
                     LYQDTKGPSQHIYAYSQEMAPSHGPELHLRHIGKTWAQLEWVPEAPELGRSPLTHYTI
                     FWTNAQDRSFSTVLNASSHSFVLRGLEPSSLYHVHLMAASQVWATNSTSLTLMTLALA
                     GRIPSGQVFQTQPTAAWVPGCLPSQRRIPSSCPAFGTPACHPSPRSRCWRRKRRSQDP
                     GSPMTAQGPVASPAWSRPMCSRGTQEYLVCSPSPSLAPVTRSFTCRCWAAPQAHGLGT
                     TSAATPLSPSWGASPPAPSPMRTSGSRPAPWGPQSP"
     misc_feature    350..610
                     /gene="CSF3R"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    644..934
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cl21522"
                     /db_xref="CDD:473895"
     misc_feature    995..1267
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1232..1237,1241..1246)
                     /gene="CSF3R"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1574..1828
                     /gene="CSF3R"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1865..2119
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
ORIGIN      
        1 ctgcccgcgc cagcttcaac gatgcaaggg cgggaaggag gctgggcagg tgttgcaatc
       61 cgcagcccct gcgcctgtca gaggccgagc cattaacgac agggctgggg agagcagccg
      121 ggctgtggct gttttcagga acttgccttg aagaggagag cagagtccag ggaggccagg
      181 cgggcgccca gccgcaggct ccaacatggg gtaactgagg ctcagaaaag tgaagtaact
      241 tgtccaaggt caccaagctg gtgagcacca agccggcact atggcggggc tgggagcctg
      301 gaacctagcg agagctgctc tgatcatctt gctgctcccc agaagcctgg agcagtgcgg
      361 gcacatcagc ctctcagccc ccatcgtccg cctgggggat cccatcacag cctcctgcac
      421 catcagccag aactgcagcc acctggactc ggaatcgcac attgtatgga agttggaagc
      481 agagcttcag cccggggaga ggcagcagta cctgccgaat gggaccctgc agtccaccat
      541 caccttgccc cacctcaacc gctctcgggc ccttctctcc tgctgcctgc actggggcaa
      601 cagcctgcag atcctggacc aggctgagct acaggcaggc taccctcccg ccacacccca
      661 caacctgtcc tgcctcatga acctcacaac caacagcctc acctgccagt gggagccagg
      721 ccccaacacc cacctgtcca ccaacttcac cctgaagagc ttcaagagcc ggggcaactg
      781 tcagagccgg gaggactcca tccccgactg cgtgcctgag gacgggcaga gccactgctc
      841 catcccccgc aaacacctac agctgtacca gaacatgggc atctgggtgc aggccaagaa
      901 cgcgctggga accagcgtgt ccccgaagct gtgccttgtc cccatggacg tcgtgaaact
      961 ggagcccccc acactgtggg ccctggggcc cagccctgag gtggccccac cccagccagg
     1021 ctgcctgagg ttgcgctggg agacctggaa gccaagccta cacatagatc agaagtgtga
     1081 gctgcgccac cagcctctgc ttggagaagc cagctgggac ctggtgggcg ccctgccctc
     1141 caggaccctc cagtatgagc tatgcgggct cctcccatcc acagcctacg ccctgcagat
     1201 gcgctgcacc cgctggcgcc tgcctggcca ctggagcaac tggagcccca gcctggagct
     1261 gaccaccaca caacgggccc ccactgtcag aatggacaca tggtggcggc agaggcagct
     1321 ggaccccagg acggtggacg tgcagctgtt ctggcagcca gtgcccctgg aggaagacag
     1381 caggcagatc caagggtacc tggtctcctt gagaccctca gaccaggctg gggcagaccc
     1441 aatactctgc aacaccacgg agctaaactg taccttccaa ctgccttcag aagcccggga
     1501 ggtgatcctt gaggcctata acacagctgg gacctctcat cccaccccag tggtcttctt
     1561 ggagagcgga ggcccacccc tgggcagact ccacaccgtg gctcgagacc ctcacagcct
     1621 ctgggtgggc tgggagcccc ccagccctca gcctcggggc tatgtcattg agtggggcct
     1681 cggtcccccc agccccagcg gcagccctaa gacgtggcgg atggagcata atggaagcat
     1741 tgcagggacc ctgctgcagg agaacatcag gccctttcag ctctacgaga tcactgtgac
     1801 ccccctgtac caggacacca aaggaccctc ccagcacatc tatgcttact cccaagagat
     1861 ggccccctcc catggcccag agctgcatct aaggcacatt ggcaagactt gggcccagct
     1921 ggagtgggta cccgaggccc ctgagctggg gaggagcccc cttacccact acactatctt
     1981 ctggaccaat gctcaggacc ggtccttctc cactgtcctg aacgcctcct cccatagctt
     2041 tgtcctccgt ggcctggagc cttccagctt gtaccatgtc cacctcatgg ctgccagcca
     2101 ggtgtgggcc accaacagta caagcctcac cctgatgacc ttggccctag caggaagaat
     2161 cccctctggc caagtgttcc agacccagcc cacagcagcc tgggttcctg ggtgcctacc
     2221 atcacaacgg aggatacctt ccagctgccc agccttcggg actccagcat gccacccatc
     2281 accaagatca cggtgctgga ggaggaagag aagaagccag gaccctggga gtccaatgac
     2341 agctcaggga cctgtggcct ccccagcctg gtccaggcct atgtgctcca gggggaccca
     2401 agagtacctc gtatgcagcc ccagccccag tctggcacca gtgaccaggt cctttacgtg
     2461 caggtgctgg gcagccccac aggcccacgg cctgggcact acctccgctg cgactccact
     2521 cagcccctct tggggggcct cacccccagc cccaagtcct atgagaacct ctggttccag
     2581 accagccccc tggggacccc agagccccta gtcccaaacc cggaggatga ctgtatcttt
     2641 gagccactgc ttgacttccc tctcctgcag gggctccggg tcagtggggt ggagggtctc
     2701 gggggcttct agggcttcct agaactcccc acctgggcct gcttcttgat aagcctgggc
     2761 tatccagaga agaggaggtc agtaagccct tcactaaaaa cccccagccc caggaaaggc
     2821 agaaagtctc ccagtgtccc cctatctctg gcccctagca tccctccccc atccccccaa
     2881 tttccatggg ctgggcctcc cacttcaaag gccagagaat gttttttcaa gccctgccca
     2941 ctagcttttt gtacttgttt cctataattt cagtctctta aactggttta tggtctga
//
LOCUS       XM_032614960            2343 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus colony stimulating factor 3 receptor
            (CSF3R), transcript variant X8, mRNA.
ACCESSION   XM_032614960
VERSION     XM_032614960.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2343
                     /gene="CSF3R"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744796"
     CDS             284..2239
                     /gene="CSF3R"
                     /codon_start=1
                     /product="granulocyte colony-stimulating factor receptor
                     isoform X7"
                     /protein_id="XP_032470851.1"
                     /db_xref="GeneID:116744796"
                     /translation="MAGLGAWNLARAALIILLLPRSLEQCGHISLSAPIVRLGDPITA
                     SCTISQNCSHLDSESHIVWKLEAELQPGERQQYLPNGTLQSTITLPHLNRSRALLSCC
                     LHWGNSLQILDQAELQAGYPPATPHNLSCLMNLTTNSLTCQWEPGPNTHLSTNFTLKS
                     FKSRGNCQSREDSIPDCVPEDGQSHCSIPRKHLQLYQNMGIWVQAKNALGTSVSPKLC
                     LVPMDVVKLEPPTLWALGPSPEVAPPQPGCLRLRWETWKPSLHIDQKCELRHQPLLGE
                     ASWDLVGALPSRTLQYELCGLLPSTAYALQMRCTRWRLPGHWSNWSPSLELTTTQRAP
                     TVRMDTWWRQRQLDPRTVDVQLFWQPVPLEEDSRQIQGYLVSLRPSDQAGADPILCNT
                     TELNCTFQLPSEAREVILEAYNTAGTSHPTPVVFLESGGPPLGRLHTVARDPHSLWVG
                     WEPPSPQPRGYVIEWGLGPPSPSGSPKTWRMEHNGSIAGTLLQENIRPFQLYEITVTP
                     LYQDTKGPSQHIYAYSQEMAPSHGPELHLRHIGKTWAQLEWVPEAPELGRSPLTHYTI
                     FWTNAQDRSFSTVLNASSHSFVLRGLEPSSLYHVHLMAASQVWATNSTSLTLMTLALA
                     GRIPSGQVFQTQPTAAWVPGCLPSQRS"
     misc_feature    353..613
                     /gene="CSF3R"
                     /note="Ig-like C2-type domain; Region: Lep_receptor_Ig;
                     pfam06328"
                     /db_xref="CDD:461878"
     misc_feature    647..937
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cl21522"
                     /db_xref="CDD:473895"
     misc_feature    998..1270
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:238020"
     misc_feature    order(1235..1240,1244..1249)
                     /gene="CSF3R"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     misc_feature    1577..1831
                     /gene="CSF3R"
                     /note="Fibronectin type III domain; Region: fn3;
                     pfam00041"
                     /db_xref="CDD:394996"
     misc_feature    1868..2122
                     /gene="CSF3R"
                     /note="Fibronectin type 3 domain; Region: FN3; smart00060"
                     /db_xref="CDD:214495"
ORIGIN      
        1 gggctgcccg cgccagcttc aacgatgcaa gggcgggaag gaggctgggc aggtgttgca
       61 atccgcagcc cctgcgcctg tcagaggccg agccattaac gacagggctg gggagagcag
      121 ccgggctgtg gctgttttca ggaacttgcc ttgaagagga gagcagagtc cagggaggcc
      181 aggcgggcgc ccagccgcag gctccaacat ggggtaactg aggctcagaa aagtgaagta
      241 acttgtccaa ggtcaccaag ctggtgagca ccaagccggc actatggcgg ggctgggagc
      301 ctggaaccta gcgagagctg ctctgatcat cttgctgctc cccagaagcc tggagcagtg
      361 cgggcacatc agcctctcag cccccatcgt ccgcctgggg gatcccatca cagcctcctg
      421 caccatcagc cagaactgca gccacctgga ctcggaatcg cacattgtat ggaagttgga
      481 agcagagctt cagcccgggg agaggcagca gtacctgccg aatgggaccc tgcagtccac
      541 catcaccttg ccccacctca accgctctcg ggcccttctc tcctgctgcc tgcactgggg
      601 caacagcctg cagatcctgg accaggctga gctacaggca ggctaccctc ccgccacacc
      661 ccacaacctg tcctgcctca tgaacctcac aaccaacagc ctcacctgcc agtgggagcc
      721 aggccccaac acccacctgt ccaccaactt caccctgaag agcttcaaga gccggggcaa
      781 ctgtcagagc cgggaggact ccatccccga ctgcgtgcct gaggacgggc agagccactg
      841 ctccatcccc cgcaaacacc tacagctgta ccagaacatg ggcatctggg tgcaggccaa
      901 gaacgcgctg ggaaccagcg tgtccccgaa gctgtgcctt gtccccatgg acgtcgtgaa
      961 actggagccc cccacactgt gggccctggg gcccagccct gaggtggccc caccccagcc
     1021 aggctgcctg aggttgcgct gggagacctg gaagccaagc ctacacatag atcagaagtg
     1081 tgagctgcgc caccagcctc tgcttggaga agccagctgg gacctggtgg gcgccctgcc
     1141 ctccaggacc ctccagtatg agctatgcgg gctcctccca tccacagcct acgccctgca
     1201 gatgcgctgc acccgctggc gcctgcctgg ccactggagc aactggagcc ccagcctgga
     1261 gctgaccacc acacaacggg cccccactgt cagaatggac acatggtggc ggcagaggca
     1321 gctggacccc aggacggtgg acgtgcagct gttctggcag ccagtgcccc tggaggaaga
     1381 cagcaggcag atccaagggt acctggtctc cttgagaccc tcagaccagg ctggggcaga
     1441 cccaatactc tgcaacacca cggagctaaa ctgtaccttc caactgcctt cagaagcccg
     1501 ggaggtgatc cttgaggcct ataacacagc tgggacctct catcccaccc cagtggtctt
     1561 cttggagagc ggaggcccac ccctgggcag actccacacc gtggctcgag accctcacag
     1621 cctctgggtg ggctgggagc cccccagccc tcagcctcgg ggctatgtca ttgagtgggg
     1681 cctcggtccc cccagcccca gcggcagccc taagacgtgg cggatggagc ataatggaag
     1741 cattgcaggg accctgctgc aggagaacat caggcccttt cagctctacg agatcactgt
     1801 gacccccctg taccaggaca ccaaaggacc ctcccagcac atctatgctt actcccaaga
     1861 gatggccccc tcccatggcc cagagctgca tctaaggcac attggcaaga cttgggccca
     1921 gctggagtgg gtacccgagg cccctgagct ggggaggagc ccccttaccc actacactat
     1981 cttctggacc aatgctcagg accggtcctt ctccactgtc ctgaacgcct cctcccatag
     2041 ctttgtcctc cgtggcctgg agccttccag cttgtaccat gtccacctca tggctgccag
     2101 ccaggtgtgg gccaccaaca gtacaagcct caccctgatg accttggccc tagcaggaag
     2161 aatcccctct ggccaagtgt tccagaccca gcccacagca gcctgggttc ctgggtgcct
     2221 accatcacaa cggagctaac cagacctctc ccctcgaccc aacttggcgt catcactgag
     2281 tccggcctgc caatccatca tctcggtcct catctgctca tccggtctcg caactgcact
     2341 cga
//
LOCUS       XM_032614970            1885 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus organic solute carrier partner 1 (OSCP1),
            transcript variant X1, mRNA.
ACCESSION   XM_032614970
VERSION     XM_032614970.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1885
                     /gene="OSCP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744820"
     CDS             83..1222
                     /gene="OSCP1"
                     /codon_start=1
                     /product="protein OSCP1 isoform X1"
                     /protein_id="XP_032470861.1"
                     /db_xref="GeneID:116744820"
                     /translation="MSVRTLPLLFLNLGGEMLYILDQRLRAQNVPGDKARKVLNDIIS
                     TMFNRKFMEELFKPQELYSKKALRTVYDRLAHASIMRLNQASMDKLYDLMTMAFKYQV
                     LLCPRPKDVLLVTFNHLDAIKGFIQDSPTILHQVDETFQQLTEIYGGLSAGEFQLIRQ
                     TLLIFFQDLHVRVSIFLKDKVQNSNGRFVLPVSGPLPWGTKVPGLIRTFNDKGEEVRK
                     VEFKHGGSYVTAPKEGSFELYGDRVLKLGTNMYSVNRPVETHMSGASENLAAQTQESI
                     APNPLAKEELNLLARLIGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELFYEV
                     INIQATQDQQTNEELARIMGEFEISDQPRRSASKGDDLLAMMDEL"
     misc_feature    131..649
                     /gene="OSCP1"
                     /note="Organic solute transport protein 1; Region: Oscp1;
                     pfam10188"
                     /db_xref="CDD:431122"
ORIGIN      
        1 ttgaggacgc gtctgacggg cctccaggcc tctgactacc aaacctccgg gctctgtacc
       61 agctgcgttc gcttccgata ccatgtcggt gcggacgcta ccgctgctct tcttgaacct
      121 gggtggggag atgctttaca tcctggatca gcggctgcga gcccagaacg tcccgggaga
      181 caaggcccga aaagttctga atgacatcat ctcaaccatg ttcaatcgaa agtttatgga
      241 ggaattgttc aaaccccaag agctctactc caaaaaggcc ctgaggacag tctacgaccg
      301 cctggctcac gcctccatca tgagactaaa ccaggccagc atggataagc tctatgacct
      361 gatgacaatg gctttcaaat atcaagtatt gctgtgtcct cgtcccaagg atgtgttgct
      421 ggtcactttc aatcatttag atgccatcaa gggattcatc caagactccc caaccatcct
      481 gcatcaagtg gatgagactt tccagcagct gactgaaata tatgggggtc tctctgcggg
      541 ggagttccag ctgatccggc agacgctcct tatcttcttc caggacctgc acgtcagggt
      601 gtccatattt ctaaaggaca aagttcagaa ttccaacggt cgctttgtgt tgccagtgtc
      661 tgggcctctt ccctggggaa ccaaagttcc cggactcatc aggacgttca acgacaaagg
      721 cgaagaagtg aggaaggtag aattcaagca cggcgggagc tatgtcactg cccccaaaga
      781 agggtctttt gaactctatg gagaccgagt cctgaaactg ggaactaata tgtacagtgt
      841 gaaccggccc gtggaaaccc atatgtctgg agcatcagag aacttagctg cacagacaca
      901 ggaaagcatt gctccaaacc ctcttgctaa agaagagctg aatctcttgg ccaggctgat
      961 aggaggcatg gagattaaga aacctagtgg ccctgagcca ggattccggt tgaatctctt
     1021 caccactgat gaagaggaag aacaggcagc gctaaccagg ccagaagagt tattctatga
     1081 agttatcaac atccaagcta ctcaggacca gcagacgaac gaagagctgg ctcggatcat
     1141 gggggagttt gagatctcgg accagccaag gcggagtgcc agcaagggcg atgatttgct
     1201 tgccatgatg gatgagttat agctgtgctg accaggcacg accctccccc tatggagagg
     1261 ctgcttgatg aggaccctgg gggatgtccc cagggagcca aatgatgctg ctagttttct
     1321 actaagtgaa ggccttcctt acctcttgtt cctgtttatg tcctaacgaa ctgtgcgggt
     1381 ctccctcggg gagcacagtc tctggaaggc acacacacat tcatattttc agcaaaatat
     1441 attctggctt ttaaactgga cccttcccac gttcttgcta gttttatggc aatcaaagca
     1501 tctggagcca cagggtcaag cctgagagtc agtaagaggg cgctcctgtt gccgttttca
     1561 ttacagcttt gcccggggga cctacggctc acaggtgcct gtgaatcatc actaaacgtc
     1621 ggcgctttct cggacgtatt ctgccttgtg agtttgacgt aagtggaaaa ggcggttgcc
     1681 tcaagcagtc ggggcccagt ttacacagcc ctcctctccc tggcacactg ggaactgtca
     1741 gctcagaggc agaggaagca aggccgtgac agggacgcct caggcaggcc ccgcgcagag
     1801 cgtgtgggtg tctgtggttc tccgcacacc tctctatcca tatgtagtgt ggacttatcc
     1861 catatggaaa tgcgtaccaa ggaaa
//
LOCUS       XM_032614971            1401 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus organic solute carrier partner 1 (OSCP1),
            transcript variant X2, mRNA.
ACCESSION   XM_032614971
VERSION     XM_032614971.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1401
                     /gene="OSCP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744820"
     CDS             108..1163
                     /gene="OSCP1"
                     /codon_start=1
                     /product="protein OSCP1 isoform X2"
                     /protein_id="XP_032470862.1"
                     /db_xref="GeneID:116744820"
                     /translation="MQPFCTFTGVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYD
                     RLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDAIKGFIQDSP
                     TILHQVDETFQQLTEIYGGLSAGEFQLIRQTLLIFFQDLHVRVSIFLKDKVQNSNGRF
                     VLPVSGPLPWGTKVPGLIRTFNDKGEEVRKVEFKHGGSYVTAPKEGSFELYGDRVLKL
                     GTNMYSVNRPVETHMSGASENLAAQTQESIAPNPLAKEELNLLARLIGGMEIKKPSGP
                     EPGFRLNLFTTDEEEEQAALTRPEELFYEVINIQATQDQQTNEELARIMGEFEISDQP
                     RRSASKGDDLLAMMDEL"
     misc_feature    135..590
                     /gene="OSCP1"
                     /note="Organic solute transport protein 1; Region: Oscp1;
                     pfam10188"
                     /db_xref="CDD:431122"
ORIGIN      
        1 gctttacatc ctggatcagc ggctgcgagc ccagaacgtc ccgggagaca aggcccgaaa
       61 agttgggttg agtgtcagat gccatgtgag atgctgggtg gagcctgatg cagcccttct
      121 gcacattcac tggagttctg aatgacatca tctcaaccat gttcaatcga aagtttatgg
      181 aggaattgtt caaaccccaa gagctctact ccaaaaaggc cctgaggaca gtctacgacc
      241 gcctggctca cgcctccatc atgagactaa accaggccag catggataag ctctatgacc
      301 tgatgacaat ggctttcaaa tatcaagtat tgctgtgtcc tcgtcccaag gatgtgttgc
      361 tggtcacttt caatcattta gatgccatca agggattcat ccaagactcc ccaaccatcc
      421 tgcatcaagt ggatgagact ttccagcagc tgactgaaat atatgggggt ctctctgcgg
      481 gggagttcca gctgatccgg cagacgctcc ttatcttctt ccaggacctg cacgtcaggg
      541 tgtccatatt tctaaaggac aaagttcaga attccaacgg tcgctttgtg ttgccagtgt
      601 ctgggcctct tccctgggga accaaagttc ccggactcat caggacgttc aacgacaaag
      661 gcgaagaagt gaggaaggta gaattcaagc acggcgggag ctatgtcact gcccccaaag
      721 aagggtcttt tgaactctat ggagaccgag tcctgaaact gggaactaat atgtacagtg
      781 tgaaccggcc cgtggaaacc catatgtctg gagcatcaga gaacttagct gcacagacac
      841 aggaaagcat tgctccaaac cctcttgcta aagaagagct gaatctcttg gccaggctga
      901 taggaggcat ggagattaag aaacctagtg gccctgagcc aggattccgg ttgaatctct
      961 tcaccactga tgaagaggaa gaacaggcag cgctaaccag gccagaagag ttattctatg
     1021 aagttatcaa catccaagct actcaggacc agcagacgaa cgaagagctg gctcggatca
     1081 tgggggagtt tgagatctcg gaccagccaa ggcggagtgc cagcaagggc gatgatttgc
     1141 ttgccatgat ggatgagtta tagctgtgct gaccaggcac gaccctcccc ctatggagag
     1201 gctgcttgat gaggaccctg ggggatgtcc ccagggagcc aaatgatgct gctagttttc
     1261 tactaagtga aggccttcct tacctcttgt tcctgtttat gtcctaacga actgtgcggg
     1321 tctccctcgg ggagcacagt ctctggaagg cacacacaca ttcatatttt cagcaaaata
     1381 tattctggct tttaaactgg a
//
LOCUS       XM_032614975            1419 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus organic solute carrier partner 1 (OSCP1),
            transcript variant X3, mRNA.
ACCESSION   XM_032614975
VERSION     XM_032614975.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1419
                     /gene="OSCP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116744820"
     CDS             126..1181
                     /gene="OSCP1"
                     /codon_start=1
                     /product="protein OSCP1 isoform X2"
                     /protein_id="XP_032470866.1"
                     /db_xref="GeneID:116744820"
                     /translation="MQPFCTFTGVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYD
                     RLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDAIKGFIQDSP
                     TILHQVDETFQQLTEIYGGLSAGEFQLIRQTLLIFFQDLHVRVSIFLKDKVQNSNGRF
                     VLPVSGPLPWGTKVPGLIRTFNDKGEEVRKVEFKHGGSYVTAPKEGSFELYGDRVLKL
                     GTNMYSVNRPVETHMSGASENLAAQTQESIAPNPLAKEELNLLARLIGGMEIKKPSGP
                     EPGFRLNLFTTDEEEEQAALTRPEELFYEVINIQATQDQQTNEELARIMGEFEISDQP
                     RRSASKGDDLLAMMDEL"
     misc_feature    153..608
                     /gene="OSCP1"
                     /note="Organic solute transport protein 1; Region: Oscp1;
                     pfam10188"
                     /db_xref="CDD:431122"
ORIGIN      
        1 aaaactggaa gaggcaatca aagaaaacca ataaatgtta aaattatgtc ttgctgcctt
       61 aaagaataac agtagagaag ttgggttgag tgtcagatgc catgtgagat gctgggtgga
      121 gcctgatgca gcccttctgc acattcactg gagttctgaa tgacatcatc tcaaccatgt
      181 tcaatcgaaa gtttatggag gaattgttca aaccccaaga gctctactcc aaaaaggccc
      241 tgaggacagt ctacgaccgc ctggctcacg cctccatcat gagactaaac caggccagca
      301 tggataagct ctatgacctg atgacaatgg ctttcaaata tcaagtattg ctgtgtcctc
      361 gtcccaagga tgtgttgctg gtcactttca atcatttaga tgccatcaag ggattcatcc
      421 aagactcccc aaccatcctg catcaagtgg atgagacttt ccagcagctg actgaaatat
      481 atgggggtct ctctgcgggg gagttccagc tgatccggca gacgctcctt atcttcttcc
      541 aggacctgca cgtcagggtg tccatatttc taaaggacaa agttcagaat tccaacggtc
      601 gctttgtgtt gccagtgtct gggcctcttc cctggggaac caaagttccc ggactcatca
      661 ggacgttcaa cgacaaaggc gaagaagtga ggaaggtaga attcaagcac ggcgggagct
      721 atgtcactgc ccccaaagaa gggtcttttg aactctatgg agaccgagtc ctgaaactgg
      781 gaactaatat gtacagtgtg aaccggcccg tggaaaccca tatgtctgga gcatcagaga
      841 acttagctgc acagacacag gaaagcattg ctccaaaccc tcttgctaaa gaagagctga
      901 atctcttggc caggctgata ggaggcatgg agattaagaa acctagtggc cctgagccag
      961 gattccggtt gaatctcttc accactgatg aagaggaaga acaggcagcg ctaaccaggc
     1021 cagaagagtt attctatgaa gttatcaaca tccaagctac tcaggaccag cagacgaacg
     1081 aagagctggc tcggatcatg ggggagtttg agatctcgga ccagccaagg cggagtgcca
     1141 gcaagggcga tgatttgctt gccatgatgg atgagttata gctgtgctga ccaggcacga
     1201 ccctccccct atggagaggc tgcttgatga ggaccctggg ggatgtcccc agggagccaa
     1261 atgatgctgc tagttttcta ctaagtgaag gccttcctta cctcttgttc ctgtttatgt
     1321 cctaacgaac tgtgcgggtc tccctcgggg agcacagtct ctggaaggca cacacacatt
     1381 catattttca gcaaaatata ttctggcttt taaactgga
//
LOCUS       XM_032614976             938 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein S15
            (MRPS15), mRNA.
ACCESSION   XM_032614976
VERSION     XM_032614976.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..938
                     /gene="MRPS15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744846"
     CDS             148..924
                     /gene="MRPS15"
                     /codon_start=1
                     /product="28S ribosomal protein S15, mitochondrial"
                     /protein_id="XP_032470867.1"
                     /db_xref="GeneID:116744846"
                     /translation="MLRAAWRALSSIRTQAVTQAPVLGLPGGGCAKLLSVQRDLPSRP
                     GGFILRAARGYATQKPVQPSHEDDPPPSMLLKDYQDIPGIEKVDDVVKKLLSLEMANQ
                     KEKLKVKKEQLMNKVVENPKDTGSLEARIVALTVKIHSYEAHMQKHRKDKAHKRYLLM
                     SIDQRKKMLKNLRKTNYAVFEKTCRELGIEYTFPPLYYRKAHRRWVTKKALCIRVFQE
                     AQKLKKQKRALKAAAAAARNNARRTQRGLPKLEEAIKENQ"
     misc_feature    475..714
                     /gene="MRPS15"
                     /note="Ribosomal protein S15; Region: Ribosomal_S15;
                     pfam00312"
                     /db_xref="CDD:459756"
ORIGIN      
        1 atcatctcgg tcctcatctg ctcatccggt ctcgcaactg cactcgattg gtcgagcctg
       61 agccaatatg gcggcgccct aaaccaagtc cgtaccgcga aggcgacggc ggccgtgggg
      121 cgggcccctc gggggtgaga aggtaccatg ctgagggcgg cgtggagggc gctgagttcg
      181 attcggaccc aagcagtgac ccaggcccca gtcctcgggc tgccgggcgg agggtgcgcc
      241 aagcttctct ccgtccagcg ggaccttccc tcacgtcctg gaggtttcat cctccgggcc
      301 gcccgcggat atgccaccca gaaaccagtc cagcccagcc atgaagatga cccaccccct
      361 tctatgctgc tcaaggacta ccaggacatc cccggaattg agaaggttga tgatgtcgtg
      421 aaaaaactct tatctttgga aatggccaac cagaaagaga agctaaaagt caagaaagag
      481 cagctgatga acaaggtcgt ggaaaaccct aaggacaccg gctccctgga ggctcgaatt
      541 gttgccttga ctgtcaagat ccacagttat gaagcacaca tgcagaaaca tcgaaaggac
      601 aaagcccaca agcgctatct gctgatgagc attgaccaga ggaaaaagat gctcaaaaac
      661 ctccgcaaga ccaactatgc tgtctttgag aagacatgca gggagctggg gattgagtac
      721 acctttcccc ctctgtacta ccgaaaagcc caccgccgct gggtgaccaa gaaggctctg
      781 tgcattcggg ttttccaaga ggctcaaaag ctgaagaagc aaaaaagggc cttaaaagct
      841 gcagctgcag cagccagaaa caacgccaga agaacccaga gaggccttcc aaaactggaa
      901 gaggcaatca aagaaaacca ataaatgtta aaattatg
//
LOCUS       XR_004347195             341 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744862
            (LOC116744862), ncRNA.
ACCESSION   XR_004347195
VERSION     XR_004347195.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..341
                     /gene="LOC116744862"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116744862"
     ncRNA           1..341
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744862"
                     /product="uncharacterized LOC116744862"
                     /db_xref="GeneID:116744862"
ORIGIN      
        1 ctcaagcttc tgcgatcatc agacttataa ctttaacttt gttaccccta ctgactatga
       61 gagaactgag gctcggtgag ggtaactgcc taagacgccg tggtgaattc ggggaaggga
      121 tggggaccac ggtgtgcctt cccttggagc gcactgggca ctgttgtgtg acaccctcag
      181 accccgtgac ctggtgttaa gtgaacaatg atgccttgtc agtactcagt ccacattctt
      241 gcccgggtaa tccttgcctt ctctttcctt tgctccctcc cgactcccct gctttctctg
      301 ggtaccctga accaccatgc aaataaactt gtttttctca a
//
LOCUS       XR_004347205             876 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116744873
            (LOC116744873), ncRNA.
ACCESSION   XR_004347205
VERSION     XR_004347205.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..876
                     /gene="LOC116744873"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs"
                     /db_xref="GeneID:116744873"
     ncRNA           1..876
                     /ncRNA_class="lncRNA"
                     /gene="LOC116744873"
                     /product="uncharacterized LOC116744873"
                     /db_xref="GeneID:116744873"
ORIGIN      
        1 agatggtgta gatcagatcg atttgattgc attagatgat tttttttccc ttccccactc
       61 ctttctggaa gctcgcatca gctgaaggct accgcctggg actcctcgga agcgtgagca
      121 agccgccacc atgcgaaggc actggggcac agccagcgca agccaccgag gtcccttctt
      181 agggcttgtt aacactgtaa cccggcactc cgagggaagc aactcccact gcccagagcc
      241 tacctcactg ctcatcagat gactctctgg cttctacaca cagttggagt tccgcttgaa
      301 acctggattt agaggggctc tctcgctgcc atgacactca atcaaagcac ctagagtggg
      361 ctggctgaga ccagagaggg taccaagcag aacaaggaca gaggaaggca ctgggagagc
      421 accagaattg gagatagagc agccatttgg atttgggcag gaagcagccg atcacagctt
      481 tggatccttc tttagggaaa tcgagttatg gatttatggt cccggtcaag ctcagcccag
      541 ccccagccag gggcgggctc agcagcaaga gttctggtgg cggcggcagt agcagcggca
      601 gcggtagcag cggcagcagc agcttggtcc tctgactctc ttcggtgacg ggtattcttg
      661 ggtggataat acggattacg ttgttattgc ttaagaatac gcgtagtcga ggagagtacc
      721 agcggcaggc gggcagcggc cgcccctccc agcccaccag ctggcctcta aacgcctgtg
      781 gttgccaagg catccagagc ctttgggatg tgctctgact gtcaacactc tgatgttgtg
      841 gagaatgagc gtaagctttg cctccacgtg aactag
//
LOCUS       XM_032614977            3591 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor superfamily member 8
            (TNFRSF8), transcript variant X1, mRNA.
ACCESSION   XM_032614977
VERSION     XM_032614977.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3591
                     /gene="TNFRSF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744884"
     CDS             243..2039
                     /gene="TNFRSF8"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 8 isoform X1"
                     /protein_id="XP_032470868.1"
                     /db_xref="GeneID:116744884"
                     /translation="MRALRAVSGLLLLGVLRALPQGRVSKDACGGDSSRYYNEAAGKC
                     CYRCPEWRSLKELCPEGPNDCRKQCDPDYYLDRNGRCTACVSCFGDDLVEKKPCSWNS
                     TRVCECRTGMFCGTSVINSCARCLPHSVCPTGMVVKFQGTAQRNTVCELPSPGASPNC
                     SASPQDCKAPASTVPQAKPTLTSPASSDARTTVLGEGTPLAPEDASKITARSSSSVGR
                     LSPDPGLTLQQPCPQGSVDCRKQCDPDYYLDRDGRCTACVSCSGDHLVEKTPCMWNSS
                     RVCECRPGMFCATSASNSCARCVIRPICPPGMVTKVQGTAERDTTYEPPPPGTHSNCS
                     TNAEDSGVPASPTPSLISLADSLTGKERGGDVTHVRGRASISTSTPISFSSTGKPTLV
                     SGPVLFWVILTLVVVVSFGSFLLCHRRGCRKWMGQKLHLCYPVQNFQPKLEPVDSRPG
                     RNPTLIRRVSVAEPGLEEQGLMSSPAVETCPNLESLQLLEANPASSPSTSMDLPEPRG
                     TAEHTNNRIENIYIMKADTVIVGTVKAKVPEGQGPVGPAGPEFEEDLEVDHAPHYPEQ
                     ETEPLAGSCGDVMFSVEEEGKEDPLPTTASGK"
     misc_feature    300..635
                     /gene="TNFRSF8"
                     /note="Tumor necrosis factor receptor superfamily member 8
                     (TNFRSF8), also known as CD30; Region: TNFRSF8; cd13409"
                     /db_xref="CDD:276914"
     misc_feature    327..437
                     /gene="TNFRSF8"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276914"
     misc_feature    444..560
                     /gene="TNFRSF8"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276914"
     misc_feature    564..635
                     /gene="TNFRSF8"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276914"
     misc_feature    765..1154
                     /gene="TNFRSF8"
                     /note="Tumor necrosis factor receptor superfamily member 8
                     (TNFRSF8), also known as CD30; Region: TNFRSF8; cd13409"
                     /db_xref="CDD:276914"
     misc_feature    849..956
                     /gene="TNFRSF8"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276914"
     misc_feature    963..1079
                     /gene="TNFRSF8"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276914"
     misc_feature    <1074..>1238
                     /gene="TNFRSF8"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); Region: TNFRSF; cl22855"
                     /db_xref="CDD:473981"
     misc_feature    1083..1154
                     /gene="TNFRSF8"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276914"
ORIGIN      
        1 cctagtgcgc ctcgggtggt ggtggaaggg aaggcttaag gctgaacctt cagagaagga
       61 gcgtccactt tggaagtgac ttcacagcgt gcggttgggt gcctgcgagg tgcgccgcgg
      121 gaggtctgcg ggcccttggg cggctcctgg cagctggcac cgcacgtggg cgagcgtgct
      181 ccccaggctg cgcaggtggc gtgggctacg agcccagtcc tccccccgac cccccggcca
      241 ggatgcgcgc cctccgcgct gtgtcgggac tgttgctcct gggggtgctc cgagccttac
      301 cacagggtcg agtctccaag gatgcctgtg gaggggactc cagccgctac tacaacgagg
      361 ctgccgggaa gtgctgctac cgctgccccg agtggcgttc cctgaaggag ctgtgccctg
      421 aggggcccaa tgactgcagg aagcagtgtg atcccgacta ctacttggac agaaatggcc
      481 gctgcacagc ctgtgtgagc tgttttggag acgacctcgt ggagaagaag ccatgctcat
      541 ggaactctac ccgcgtctgc gagtgccgga ctggcatgtt ctgtggcaca tcagtcatca
      601 actcctgtgc ccgctgcctc cctcactccg tctgcccaac agggatggtt gtcaagttcc
      661 agggcacagc gcagaggaac actgtctgtg agctgccttc cccaggggcc agccccaact
      721 gcagcgccag cccccaggac tgcaaggccc ctgccagcac cgtcccccag gccaagccca
      781 ccctgacctc tccagcaagc tctgatgcca ggaccacagt tctcggagag ggcacccccc
      841 tcgccccaga agatgcttct aaaatcactg cccgctctag ctcctccgtg gggaggctca
      901 gtccagatcc aggactgacc ctgcaacagc catgccctca ggggtctgtc gactgcagga
      961 agcagtgtga ccctgactac tacctggaca gggacggtcg ctgcacggcc tgtgtgagct
     1021 gttcaggaga ccacctcgtg gagaagacac cttgcatgtg gaactcctcc cgcgtctgcg
     1081 agtgccgacc tggcatgttc tgtgccacat cagcctccaa ctcctgtgct cgctgcgtca
     1141 tccgccccat ctgcccacca gggatggtca ccaaggtcca gggtacggct gagagggaca
     1201 ccacctatga gccacctccc ccggggaccc actctaactg cagcaccaac gcagaggaca
     1261 gcggggtgcc cgccagcccc accccctccc tgatctccct ggccgactcc ctgaccggta
     1321 aggagcgtgg aggggacgtc acccacgtgc ggggacgcgc ctctatctca accagcactc
     1381 ctatatcctt ctcctccaca gggaagccca ctctggtttc aggacctgtg ctcttctggg
     1441 tgatcttgac actggtggtg gtcgtcagct ttggctcctt tctcctgtgc caccggaggg
     1501 gctgcaggaa gtggatgggg cagaagctcc acctgtgcta cccagtccag aacttccagc
     1561 ccaagctgga gccagtggat tccaggcccg ggaggaaccc gacactgatc aggagggtat
     1621 cggtggcaga gccgggcctt gaggagcagg ggttaatgag ctccccagct gtggagacct
     1681 gccccaacct ggagagcctg cagctgctgg aggccaaccc agccagcagc ccctccacct
     1741 ccatggacct tcctgagccc cgaggcaccg cggagcacac caacaacagg attgagaaca
     1801 tctacatcat gaaggctgac accgtgattg tggggaccgt gaaggccaag gtgcctgagg
     1861 gccagggccc ggtggggccg gcagggcccg agttcgagga ggatctggag gtggaccatg
     1921 ccccccacta cccagagcag gagacggaac cactggcggg cagctgtggg gacgttatgt
     1981 tctcggtgga ggaggaaggg aaggaggacc ccttgcccac gaccgcctct gggaaatgag
     2041 tcctggcctg ggctggggct gagagggcag ctgggtgcct ctgggaggcc acggtgaccc
     2101 tggtggcacc aagctggtag caccaacctg gtgccagagg cccatctggc ctgaggtgag
     2161 gttccagcac ccaacggtag acccagcctt atcaacgcag gaggttctgc tcgtctgtac
     2221 ctgcctcccc acccagctgc cccccaaccc agaccctggg gagcccggac ctgtgcggca
     2281 gagacaacca aggggctgga tctgaacagc gctgtgtgtt ggggcaacag ccagccagca
     2341 gggcctgggc accctgcatt ctgctgctgc cagcccttcc ctgttctgca gcctccacgg
     2401 tgggcccagg gcccagcgca catcactgtt cccgcagcag gaggcctctt gggacccaga
     2461 gacctgcaga ttctgtgcag ccgtggtgcc cctgcctggc cggagaccct gcccacccag
     2521 ctgctgcctg gagaagggcc tgctctgctt cgcccagggg ggctccctcc ccgcatggag
     2581 aaggggaact gtgggccctt cttgggtcct tacccgctct gtgggcaccg tgtgctctgt
     2641 cccgggccac caaagatgcg tcttccccag atctgccacg tgcacagatc ctggtggtgc
     2701 caggccctgc cttcggctct ggttgctcag cacccatgat gggggtgtgg gtgtcagaaa
     2761 actacttggt ttcactcaga cattctgcag gaaaagaaag agcgtttcgt agttcagtct
     2821 ggacttcagg atttttacgt ttcacacaga ggagtcaagt gccctgacct ggggcttctt
     2881 cctgctctcc ccagggctct cagactcatg gcaacaaaca agtggtcttg gaaagggagt
     2941 gtgggcagat gaggcccggg gcactgagct gcaggcagcc tggagactgc tggaattacc
     3001 cgttggaagc cagccccggg aaggctgctg tttactcacc agcctgcttg gtctctggag
     3061 gaagttgagg ctggctccgg cttcaccagg gtagtttctg aaaccactca gatgttttgg
     3121 ggaaagttgg agagaggctg gatgccgtga gagaccgttt acaccagaac ctgaagttta
     3181 cgtggtccgg acaatgacca aaaccccctg tgcccggaca gtgtgaggac tctgctccct
     3241 cctgccacta cccccacccc ccaagggctc cctcacccaa cggcccttca caaaacttcg
     3301 gtcctttaaa aattcataag ttcccttaaa aaataatcat aacgctcagg aaattctccc
     3361 tgagatttga gtacctctga gcagaagggt ccgagcagtc cttctcccca caagacaacg
     3421 gctccccctt tacctctctg ccccagacac ctaggctgcc agcctctggg gacggggaga
     3481 cccctacctg ctgggacagc ccttcccact gctggaggtt cttccctgtg gatggaggca
     3541 gaccctgtcc ctgtggaact cccactccct ggtcgctcca aggcccggcc t
//
LOCUS       XM_032614978            3510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TNF receptor superfamily member 8
            (TNFRSF8), transcript variant X2, mRNA.
ACCESSION   XM_032614978
VERSION     XM_032614978.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3510
                     /gene="TNFRSF8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744884"
     CDS             243..1958
                     /gene="TNFRSF8"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 8 isoform X2"
                     /protein_id="XP_032470869.1"
                     /db_xref="GeneID:116744884"
                     /translation="MRALRAVSGLLLLGVLRALPQGRVSKDACGGDSSRYYNEAAGKC
                     CYRCPEWRSLKELCPEGPNDCRKQCDPDYYLDRNGRCTACVSCFGDDLVEKKPCSWNS
                     TRVCECRTGMFCGTSVINSCARCLPHSVCPTGMVVKFQGTAQRNTVCELPSPGASPNC
                     SASPQDCKAPASSTVPQAKPTLTSPASSDARTTVLGEGTPLAPEDASKITARSSSSVG
                     RLSPDPGLTLQQPCPQGSVDCRKQCDPDYYLDRDGRCTACVSCSGDHLVEKTPCMWNS
                     SRVCECRPGMFCATSASNSCARCVIRPICPPGMVTKVQGTAERDTTYEPPPPGTHSNC
                     STNAEDSGVPASPTPSLISLADSLTGKPTLVSGPVLFWVILTLVVVVSFGSFLLCHRR
                     GCRKWMGQKLHLCYPVQNFQPKLEPVDSRPGRNPTLIRRVSVAEPGLEEQGLMSSPAV
                     ETCPNLESLQLLEANPASSPSTSMDLPEPRGTAEHTNNRIENIYIMKADTVIVGTVKA
                     KVPEGQGPVGPAGPEFEEDLEVDHAPHYPEQETEPLAGSCGDVMFSVEEEGKEDPLPT
                     TASGK"
     misc_feature    300..635
                     /gene="TNFRSF8"
                     /note="Tumor necrosis factor receptor superfamily member 8
                     (TNFRSF8), also known as CD30; Region: TNFRSF8; cd13409"
                     /db_xref="CDD:276914"
     misc_feature    327..437
                     /gene="TNFRSF8"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276914"
     misc_feature    444..560
                     /gene="TNFRSF8"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276914"
     misc_feature    564..635
                     /gene="TNFRSF8"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276914"
     misc_feature    768..1157
                     /gene="TNFRSF8"
                     /note="Tumor necrosis factor receptor superfamily member 8
                     (TNFRSF8), also known as CD30; Region: TNFRSF8; cd13409"
                     /db_xref="CDD:276914"
     misc_feature    852..959
                     /gene="TNFRSF8"
                     /note="CRD1 [structural motif]; Region: CRD1"
                     /db_xref="CDD:276914"
     misc_feature    966..1082
                     /gene="TNFRSF8"
                     /note="CRD2 [structural motif]; Region: CRD2"
                     /db_xref="CDD:276914"
     misc_feature    <1077..>1241
                     /gene="TNFRSF8"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); Region: TNFRSF; cl22855"
                     /db_xref="CDD:473981"
     misc_feature    1086..1157
                     /gene="TNFRSF8"
                     /note="CRD3 [structural motif]; Region: CRD3"
                     /db_xref="CDD:276914"
ORIGIN      
        1 cctagtgcgc ctcgggtggt ggtggaaggg aaggcttaag gctgaacctt cagagaagga
       61 gcgtccactt tggaagtgac ttcacagcgt gcggttgggt gcctgcgagg tgcgccgcgg
      121 gaggtctgcg ggcccttggg cggctcctgg cagctggcac cgcacgtggg cgagcgtgct
      181 ccccaggctg cgcaggtggc gtgggctacg agcccagtcc tccccccgac cccccggcca
      241 ggatgcgcgc cctccgcgct gtgtcgggac tgttgctcct gggggtgctc cgagccttac
      301 cacagggtcg agtctccaag gatgcctgtg gaggggactc cagccgctac tacaacgagg
      361 ctgccgggaa gtgctgctac cgctgccccg agtggcgttc cctgaaggag ctgtgccctg
      421 aggggcccaa tgactgcagg aagcagtgtg atcccgacta ctacttggac agaaatggcc
      481 gctgcacagc ctgtgtgagc tgttttggag acgacctcgt ggagaagaag ccatgctcat
      541 ggaactctac ccgcgtctgc gagtgccgga ctggcatgtt ctgtggcaca tcagtcatca
      601 actcctgtgc ccgctgcctc cctcactccg tctgcccaac agggatggtt gtcaagttcc
      661 agggcacagc gcagaggaac actgtctgtg agctgccttc cccaggggcc agccccaact
      721 gcagcgccag cccccaggac tgcaaggccc ctgccagcag caccgtcccc caggccaagc
      781 ccaccctgac ctctccagca agctctgatg ccaggaccac agttctcgga gagggcaccc
      841 ccctcgcccc agaagatgct tctaaaatca ctgcccgctc tagctcctcc gtggggaggc
      901 tcagtccaga tccaggactg accctgcaac agccatgccc tcaggggtct gtcgactgca
      961 ggaagcagtg tgaccctgac tactacctgg acagggacgg tcgctgcacg gcctgtgtga
     1021 gctgttcagg agaccacctc gtggagaaga caccttgcat gtggaactcc tcccgcgtct
     1081 gcgagtgccg acctggcatg ttctgtgcca catcagcctc caactcctgt gctcgctgcg
     1141 tcatccgccc catctgccca ccagggatgg tcaccaaggt ccagggtacg gctgagaggg
     1201 acaccaccta tgagccacct cccccgggga cccactctaa ctgcagcacc aacgcagagg
     1261 acagcggggt gcccgccagc cccaccccct ccctgatctc cctggccgac tccctgaccg
     1321 ggaagcccac tctggtttca ggacctgtgc tcttctgggt gatcttgaca ctggtggtgg
     1381 tcgtcagctt tggctccttt ctcctgtgcc accggagggg ctgcaggaag tggatggggc
     1441 agaagctcca cctgtgctac ccagtccaga acttccagcc caagctggag ccagtggatt
     1501 ccaggcccgg gaggaacccg acactgatca ggagggtatc ggtggcagag ccgggccttg
     1561 aggagcaggg gttaatgagc tccccagctg tggagacctg ccccaacctg gagagcctgc
     1621 agctgctgga ggccaaccca gccagcagcc cctccacctc catggacctt cctgagcccc
     1681 gaggcaccgc ggagcacacc aacaacagga ttgagaacat ctacatcatg aaggctgaca
     1741 ccgtgattgt ggggaccgtg aaggccaagg tgcctgaggg ccagggcccg gtggggccgg
     1801 cagggcccga gttcgaggag gatctggagg tggaccatgc cccccactac ccagagcagg
     1861 agacggaacc actggcgggc agctgtgggg acgttatgtt ctcggtggag gaggaaggga
     1921 aggaggaccc cttgcccacg accgcctctg ggaaatgagt cctggcctgg gctggggctg
     1981 agagggcagc tgggtgcctc tgggaggcca cggtgaccct ggtggcacca agctggtagc
     2041 accaacctgg tgccagaggc ccatctggcc tgaggtgagg ttccagcacc caacggtaga
     2101 cccagcctta tcaacgcagg aggttctgct cgtctgtacc tgcctcccca cccagctgcc
     2161 ccccaaccca gaccctgggg agcccggacc tgtgcggcag agacaaccaa ggggctggat
     2221 ctgaacagcg ctgtgtgttg gggcaacagc cagccagcag ggcctgggca ccctgcattc
     2281 tgctgctgcc agcccttccc tgttctgcag cctccacggt gggcccaggg cccagcgcac
     2341 atcactgttc ccgcagcagg aggcctcttg ggacccagag acctgcagat tctgtgcagc
     2401 cgtggtgccc ctgcctggcc ggagaccctg cccacccagc tgctgcctgg agaagggcct
     2461 gctctgcttc gcccaggggg gctccctccc cgcatggaga aggggaactg tgggcccttc
     2521 ttgggtcctt acccgctctg tgggcaccgt gtgctctgtc ccgggccacc aaagatgcgt
     2581 cttccccaga tctgccacgt gcacagatcc tggtggtgcc aggccctgcc ttcggctctg
     2641 gttgctcagc acccatgatg ggggtgtggg tgtcagaaaa ctacttggtt tcactcagac
     2701 attctgcagg aaaagaaaga gcgtttcgta gttcagtctg gacttcagga tttttacgtt
     2761 tcacacagag gagtcaagtg ccctgacctg gggcttcttc ctgctctccc cagggctctc
     2821 agactcatgg caacaaacaa gtggtcttgg aaagggagtg tgggcagatg aggcccgggg
     2881 cactgagctg caggcagcct ggagactgct ggaattaccc gttggaagcc agccccggga
     2941 aggctgctgt ttactcacca gcctgcttgg tctctggagg aagttgaggc tggctccggc
     3001 ttcaccaggg tagtttctga aaccactcag atgttttggg gaaagttgga gagaggctgg
     3061 atgccgtgag agaccgttta caccagaacc tgaagtttac gtggtccgga caatgaccaa
     3121 aaccccctgt gcccggacag tgtgaggact ctgctccctc ctgccactac ccccaccccc
     3181 caagggctcc ctcacccaac ggcccttcac aaaacttcgg tcctttaaaa attcataagt
     3241 tcccttaaaa aataatcata acgctcagga aattctccct gagatttgag tacctctgag
     3301 cagaagggtc cgagcagtcc ttctccccac aagacaacgg ctcccccttt acctctctgc
     3361 cccagacacc taggctgcca gcctctgggg acggggagac ccctacctgc tgggacagcc
     3421 cttcccactg ctggaggttc ttccctgtgg atggaggcag accctgtccc tgtggaactc
     3481 ccactccctg gtcgctccaa ggcccggcct
//
LOCUS       XM_032614979            2243 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell division cycle associated 8 (CDCA8),
            mRNA.
ACCESSION   XM_032614979
VERSION     XM_032614979.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2243
                     /gene="CDCA8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 10 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744910"
     CDS             127..969
                     /gene="CDCA8"
                     /codon_start=1
                     /product="borealin"
                     /protein_id="XP_032470870.1"
                     /db_xref="GeneID:116744910"
                     /translation="MAPARKGGSRVTKTSSVRSRKLASFLKDFDREVQIRSKQIQSDR
                     QNLLKEMDNLYNIEILRLPKALREMNWLDYFALGGNKRALEEAATADLDITEINKLTA
                     EAVQTPLKSAKTRKVMQVDDMIKEEEEEENENKNPQTARVKRCPPSKKRTQSIQGKGK
                     SKRSNHCATVTPAVSRLELSMVKPTPGPTPRFDSRVFKTPGLRTPAARERIYNVSVNG
                     SPLADSKEIFLTVPVGGGESMRLLASDLQRIDIAQLDPEALGNIKKLSSRLAQICSSI
                     RTHK"
     misc_feature    187..357
                     /gene="CDCA8"
                     /note="Nbl1 / Borealin N terminal; Region:
                     Nbl1_Borealin_N; pfam10444"
                     /db_xref="CDD:463095"
     misc_feature    613..951
                     /gene="CDCA8"
                     /note="Cell division cycle-associated protein 8; Region:
                     Borealin; pfam10512"
                     /db_xref="CDD:463127"
ORIGIN      
        1 gtggcagttt gaatttggtg gcggcggtcg cacgtccagt tagccccgga gccgctccct
       61 ctcggctgaa gcagccaggt ttttctcagc ccctgtttcg ggacccacag cctccatcga
      121 agcgccatgg ctccggctag gaagggcggc agtcgggtga ccaagaccag ctcggtacgg
      181 agccgaaagc tcgcctcttt tcttaaggac ttcgaccgtg aagtgcaaat acgatccaag
      241 cagattcagt cagacaggca gaacctcctc aaggagatgg ataacttgta caacatcgag
      301 atcctgcgac tccccaaggc gctgcgcgag atgaactggc tcgactactt cgcccttgga
      361 ggaaacaagc gggcgctgga ggaagcagca acagctgacc tggatatcac agaaataaac
      421 aaactaacag cagaagctgt tcagacaccc ctgaaatctg ccaaaacacg aaaggtgatg
      481 caagtggatg acatgataaa ggaagaagaa gaggaagaaa atgaaaataa gaatcctcaa
      541 actgcaagag ttaaaaggtg tcctccatcc aagaagagaa cccagtccat acaaggaaaa
      601 ggcaaaagta aaaggtcaaa ccattgtgcc actgttaccc cagctgtgag ccgactggag
      661 ttgtctatgg tgaaaccaac tccgggccca acacccaggt ttgactcaag ggtcttcaag
      721 accccaggcc tgcgtactcc agcagccaga gagcggattt acaatgtctc tgtaaatggc
      781 agtcctcttg ctgacagcaa agagatattc ctcactgtgc cagtgggagg cggagagagc
      841 atgcgattat tggccagtga cttgcagagg attgatatcg cacagctgga tccagaggcc
      901 ttgggaaaca ttaagaagct ctctagccgt cttgctcaaa tctgcagcag catacggact
      961 cacaaatgag gctgctagtc caagaagcta gatttaacag gatggacctt caatgggcac
     1021 ttctgggacc ctgaagacac ctcttccctt cggcttattg tctgtttgaa tgtgaagttc
     1081 cagagcaggg agaagcgttc ctcttggaga attcaggaaa tgttgctatt ggcacctccc
     1141 aacccagatg acagacactg cctctgtgtc catacagtcc aaacctcctg ccattctccc
     1201 aactgaattc tccttcctgc tctcagagct gccgcctctg cctgctgtag ctccacgtcc
     1261 tcttcgccct gccctaactc cagctggggc tgcacagggg agcctcatgt tctcgggaag
     1321 actgccaact cgccctcacc ggagagcccg ctccagctgg tgttcccgcc ctgtgcgtgc
     1381 ttgaggctgg gagctaggct cagagaagtg agctccgtga gagggcggct ccaggaagct
     1441 gggaaggact gtgcagatgg ggccaggacc tgtcacagca gtgaccacag gaggaaacat
     1501 ctcccctact gcacacatcc cctccctcct gtggtgggta ctgacagggc tctgcaatct
     1561 taacacctgc catgcccagt agtttggttt caagctgact catagactag tattttgtat
     1621 tatccctgtt taccaaagac caaaacttgg tttgtgggca gtttccatgt cttactcctc
     1681 tgcctctctg gttagtccag ttagtgggaa tctggataag ggaactgtag ggtttaggtt
     1741 aatcaggggc ttttacatga ctggccgcag aggaactctg ctgtccgtgg ccctgtgtcc
     1801 ccaccaggcc tgtagactgc agagagcact tctgtcttct gagggtcacg ggggagtggg
     1861 cgtagcttgc ctggtggcct cgtccctcac gtctggcctc tgccctggcg tgggctgtca
     1921 cgtgggctgc gctccagcca gcacctgtgc cccaaagaat cattagatgt ggtctgagaa
     1981 cgtgggagct gagagtcccc accccaagcc tgagagcaca gtgttctgtg tatggctctt
     2041 tgttgtactc tgtattattt tcctacacga ccattctagt ccagtcctgt tcaagatgtg
     2101 ttcttttcaa gttgttttat tctccctttc ctgagacttt tgtacatact gttttcctga
     2161 gtcatggtat ctgtaagctg atttattcta atcagagcta ctgaaaggta cctgttttca
     2221 ataaattgtg gatttgtttt taa
//
LOCUS       XM_032614983            3796 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 78 (WDR78), mRNA.
ACCESSION   XM_032614983
VERSION     XM_032614983.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-182               VOSU01000011.1     58147350-58147531   c
            183-183             "N"                1-1
            184-295             VOSU01000011.1     58147238-58147349   c
            296-479             VOSU01000011.1     58137292-58137475   c
            480-664             VOSU01000011.1     58122733-58122917   c
            665-777             VOSU01000011.1     58121282-58121394   c
            778-934             VOSU01000011.1     58115561-58115717   c
            935-1074            VOSU01000011.1     58112434-58112573   c
            1075-1230           VOSU01000011.1     58092282-58092437   c
            1231-1425           VOSU01000011.1     58075257-58075451   c
            1426-1625           VOSU01000011.1     58047213-58047412   c
            1626-1712           VOSU01000011.1     58043377-58043463   c
            1713-1864           VOSU01000011.1     58041720-58041871   c
            1865-2022           VOSU01000011.1     58039846-58040003   c
            2023-2144           VOSU01000011.1     58039434-58039555   c
            2145-2243           VOSU01000011.1     58031860-58031958   c
            2244-2470           VOSU01000011.1     58030989-58031215   c
            2471-2627           VOSU01000011.1     58028097-58028253   c
            2628-3796           VOSU01000011.1     58018439-58019607   c
FEATURES             Location/Qualifiers
     source          1..3796
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3796
                     /gene="WDR78"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 79% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116744926"
     CDS             126..2690
                     /gene="WDR78"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: WD repeat-containing
                     protein 78"
                     /protein_id="XP_032470874.1"
                     /db_xref="GeneID:116744926"
                     /translation="MTPGKHSRALAGAADAGGWXYRGSRSSQGRGWSTTPHPVATMPI
                     SPVNSRKQPNVGVNTGTQSKRSISFTGPAKGAQMKGGYISANQSKMAGSKTMVILPDP
                     KTVEKMNISSTKTATRVTDIHGVDVTPRPLYHPDPYTGTAKPNKLLTSQEGSRTSDFI
                     ASYSLYQNTINPSTLGQFTRSILGSSTVSKSSTSTTESMVEDLEEPSFKRERLASFTD
                     LQVIRATPGKIVTKEDLEKTIEIILTETETMNFFNLPTVMVSVGSEEAEKVSRRNKNY
                     ETLCRNRLGNDLYVERMMQTINGAPKNKHVQCDKIMKEDKGIMSTAWDLYDSYNAMEL
                     SSLPVKRSTVDSSSKACVPSKDWDQRMPGSNLEKISEGSSLMDIENVILAKVHDEEED
                     NSEAVLKSDKFQQDLFFMERVIMENIFQPKLAAYRQLPVLKEPEPEDFLVGEKLEEVE
                     EEVKKEEEEEIEIGSEQSTIPANLERLWSFSCDLTKGLNVSSLAWNKKNPDLLAVGYG
                     HFGFKEQKRGLACCWSIKNPMWPERTYQSPYGVTAVDFSIGAPNLLAVGYHNGTIAIY
                     NVQSNSNIPVLDSSESPQKHLGPVWQLQWIEQDRGTAGDDKREILVSISADGRISKWV
                     MRKGLDCHDLMRLRRTTASSSKKGGKKEKKGEALLSRQAPGMCFAFHPKDTNIYLAGT
                     EEGHIHKCSCSYNEQYLDTYRGHKGPVYKIAWNPFCHDVFLSCSADWGIIIWQHENLK
                     PFLSFYPTTYVVYDVAWSPKSSYIFAAANESRVEIWDLHFSTLDPLIVNVANPGIKFT
                     TVLFTKQTDCLLVGDSDGQVAVYELRNMPPALDSNRGDIINTLLGPKSNQSIIHHQ"
     misc_feature    1596..1733
                     /gene="WDR78"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1743..2600
                     /gene="WDR78"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1746..1880
                     /gene="WDR78"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1896..2105
                     /gene="WDR78"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2118..2234
                     /gene="WDR78"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2253..2360
                     /gene="WDR78"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2379..2477
                     /gene="WDR78"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2505..2651
                     /gene="WDR78"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gtcgtccggg gcttgctctt gctccaccaa ccctctgtcc tcccctccgc ctccgccctc
       61 ctcctcggcc tccagccgcc agccaaccgc gcggccgctt gttgagccaa ggctccaccg
      121 tctccatgac gcccggcaaa cattcccgtg ccttagccgg agccgctgac gccgggggtt
      181 ggnggtacag gggctccaga agcagccagg gaagggggtg gtcgaccact ccccacccag
      241 tcgccaccat gcccatctct ccggtaaaca gccgcaagca gccgaacgtc ggggtaaaca
      301 ctggcacaca gtcgaagagg tctattagct ttactggccc agcaaaagga gcgcaaatga
      361 aaggaggata tattagtgca aaccaaagca aaatggctgg gtcaaaaacc atggtgattc
      421 tacctgaccc caaaacagta gaaaaaatga atatttcctc cacaaagaca gccacgcggg
      481 tgactgatat acatggagtt gatgttactc ccagacctct ttaccatcca gatccatata
      541 ctggtacagc aaagccaaat aaactattga catcacaaga aggatcacgt acatcagact
      601 ttatagcttc ctatagcctt tatcagaata caataaatcc tagtacgtta gggcagttta
      661 caaggtcaat tttaggaagc agtacagttt ctaagtcaag tacatccact actgaatcaa
      721 tggtagaaga cctagaagaa ccatccttta aacgggaaag gttggctagt tttacagatt
      781 tacaagttat tagggcaaca cctggaaaaa ttgtaacaaa agaagacctg gagaagacta
      841 tagagataat actcacagag acagaaacga tgaacttttt taacctacca acagtcatgg
      901 tttctgtagg atctgaagaa gctgagaaag taagccggag aaacaagaac tatgagactc
      961 tttgtcgaaa tagattaggt aatgacttat atgtagaaag gatgatgcag actattaatg
     1021 gagcaccaaa gaataaacac gttcaatgtg acaaaatcat gaaggaagac aaaggcataa
     1081 tgtccactgc ttgggatttg tacgattctt ataatgctat ggagctttca tctttaccag
     1141 taaaaagatc tacagttgat tcaagtagta aagcatgcgt accttctaaa gactgggacc
     1201 aaagaatgcc agggagtaat ttagaaaaaa ttagtgaagg tagttctcta atggatattg
     1261 aaaatgtaat tctggctaaa gtccatgatg aagaagaaga caactcagag gcagtattga
     1321 aatctgataa gttccaacag gacttatttt ttatggaacg agttataatg gaaaatatat
     1381 ttcagccaaa acttgcagct tatcgtcagc ttcctgtttt aaaagaacca gaacctgaag
     1441 actttttagt aggtgaaaaa cttgaagagg tagaagaaga ggttaagaag gaagaggaag
     1501 aagaaataga aataggttca gaacaatcaa caataccagc caatttggaa cgactttggt
     1561 ccttttcctg cgacttaacc aaaggcctta atgtgagcag ccttgcctgg aataaaaaaa
     1621 atccagacct tttggctgtt ggctatgggc actttggatt taaggagcaa aaaagaggat
     1681 tggcttgctg ctggtcaata aagaatccca tgtggccaga acgtacttat cagagtccat
     1741 atggcgttac tgctgtggat ttttcaattg gagcacctaa ccttttagca gttggctatc
     1801 acaatggcac tattgcgatt tataatgtac agagcaacag taacattcca gttctggata
     1861 gtagcgaatc acctcaaaaa catttgggac ctgtatggca actacagtgg atagaacaag
     1921 atcgagggac agcaggtgat gacaaaagag aaatactagt ttctatatca gcagatggaa
     1981 ggatctccaa atgggttatg cggaaaggac tggactgtca tgatttgatg cgtttgagga
     2041 gaactactgc tagcagcagc aaaaaaggag gaaaaaaaga aaagaaaggt gaagctttgt
     2101 tatctcgaca ggctcctgga atgtgttttg cttttcaccc caaggacaca aatatctatt
     2161 tggctggcac tgaagaaggt catattcaca aatgttcttg ttcatataat gagcaatatc
     2221 tagataccta cagaggacac aagggtccag tgtataaaat agcatggaat ccattttgtc
     2281 atgatgtatt cttaagctgt tctgcagatt ggggcattat tatatggcaa catgagaatc
     2341 ttaagccatt tttgagtttt tatccaacta cttatgttgt ttatgatgtt gcctggtctc
     2401 caaaatcatc ctatatattt gcagctgcaa acgagagcag agtggagatt tgggaccttc
     2461 acttcagcac tttggaccct ctgattgtga atgttgctaa ccctggaatc aagttcacaa
     2521 ctgttctctt cactaagcaa acagattgcc ttctggtggg agacagtgat ggacaagttg
     2581 ctgtgtatga attaagaaat atgccccctg ctttggactc taaccgggga gatataataa
     2641 atactttgct tggacccaag tcaaatcaaa gcataattca tcatcagtag tatctttttt
     2701 gttgttgttt aaaggaacag tgtttaatat ccaatagtct ggtttgtatg cagtgagctg
     2761 ggattttgat tatagaacac aatatttgat gtataacttc catctaaatt taatataaac
     2821 ttaatgaact tttacttcag aaaatgtgat tagtttgtga tttaagctaa ttgtaagagt
     2881 tttactgggt ttttcttaat ttttaaaaat ttatttctat tctttttctt agtcatagtc
     2941 caagtacata tatgtactta taaaatatcc agataagtta gaaattgtta ttcctttaga
     3001 agcaacgctt ggaaagtatt agaattattt aaaccagaat ctttattaag acaaagttcc
     3061 atacactttt aaatcttctg ctttctgagc tgtgttttcc agggtttatg aattttgcag
     3121 gtgttagtat tgtgagaata ctggattttc atacccaatt ttaaataaga attttatact
     3181 cttagatctg agagctgaaa ctatagaata ttgttagact atttgacaaa caaaagacat
     3241 gacaataaat gtcagaattg cattgtttgg ccagcaggca tcatacactc aattcagaga
     3301 gaattagtct gggacacatc agggcatcct cctctgcatc cttcagaatc tgctctgggt
     3361 tttaagccca gacttaagtg ggcccagaga taaaacagaa gtccctggtc tgtagtttgc
     3421 atcaggatgt tattttgtga agggctctag agcaagcttg tggaaattgg aggagtggga
     3481 ggcagcaact cctccaaata tagattgcta actgtctgtt ccatgctgtt tgtcttcaaa
     3541 agtcttgcag tttgttaact gagaccatag aacagtataa cctgttctgt aaagcattct
     3601 aagtggagag gagaggataa ggcacttgaa actgactaaa ctgtctgaaa aataatatta
     3661 aaagtgagaa tggaatcaga gcagcagtgg gaattatcag tgtccatttc tttggagcca
     3721 tcctttaaac aaaagcaagg caatttttag gtggactgaa agctaaggtc aggttataag
     3781 gattataaat tttctg
//
LOCUS       XM_032614999            4513 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X1, mRNA.
ACCESSION   XM_032614999
VERSION     XM_032614999.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4513
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4513
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             65..1843
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X1"
                     /protein_id="XP_032470890.1"
                     /db_xref="GeneID:116744931"
                     /translation="MDGASSGGGGSSGGGGGSGGSGYGVVARFSQCLAEFRTWLRTNW
                     LRFNADKTDVMLCLRTADGPIISRIWPSVESSSPGGSATSDDHEFDPSADMLVHDFDD
                     ERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEEEEEE
                     GEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRR
                     CKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKDEAERR
                     EVTCWGHTVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHIKDNE
                     QALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQA
                     NKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESA
                     ASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGLHVNG
                     PTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVNSNGK
                     ESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    806..997
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1166..1300
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1166..1168,1256..1261,1265..1270,1274..1282,
                     1286..1294)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1328..>1768
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 aaggaggcgg gcggcccggg ccctaggccc ctcccaggct ctgagtctcc cgggctgcag
       61 gcggatggat ggggcttctt caggcggcgg cggcagcagc ggaggtggcg gcggcagcgg
      121 cggcagcggc tatggtgtgg tggctcgatt ctcccagtgc ctggctgagt ttcggacgtg
      181 gttaagaacc aactggttga ggttcaatgc agacaagacg gatgtgatgc tgtgtttgag
      241 aactgctgat gggccaataa tttccagaat ttggccatct gttgagtctt caagtccagg
      301 aggttcagca acatcagatg accatgaatt tgatccatca gctgacatgc tggttcatga
      361 ttttgatgat gaacgcacat tagaagagga agaaatgatg gaaggagaaa caaacttcag
      421 ttctgaaata gaggatcttg caagggaagg cgacatgcca attcatgaac ttctcagcct
      481 ttatggttat gatagtacta ttcgactacc tgaggaagat gaggaggagg aggaggagga
      541 agaaggtgaa gatgatgaag atgctgataa tgatgataac agtggctgta gtggggaaaa
      601 taaagaagag aatataaaag attcctcagg tcaagaggat gaaactcagt cttccaatga
      661 tgatccatca caatctgttg cttctcaaga tgcccaggaa ataatccgtc cacgtcgatg
      721 taaatatttt gatacaaata gtgaaataga agaagaatct gaagaagatg aagattatat
      781 accatcagaa gactggaaaa aggagattat ggtgggctcc atgtttcaag cagagattcc
      841 agttggcatc tgtagataca aagaaaatga aaaagatgag gcagaaagaa gggaagtaac
      901 ttgctggggt catacagtat atgaaaatga tgatcagctc ctgtgggacc ctgagtactt
      961 accggaagac aaagtgattg tatttcttaa ggatgcatct agaagaacag gtgatgagaa
     1021 aggtgtagaa gcaattcctg aaggatctca cataaaagac aatgaacagg cattatatga
     1081 attagttaaa tgcaattttg atacagaaga agcattaaga agattaagat ttaatgtaaa
     1141 agcagctaga gaggaattat ctgtttggac agaggaagag tgtagaaatt ttgaacaagg
     1201 gttgaaggcc tatggaaagg actttcattt gattcaggct aataaagttc gaacaaggtc
     1261 agttggtgaa tgtgtagcat tctattatat gtggaaaaaa tctgaacgtt acgatttctt
     1321 tgctcagcaa acgcgatttg gaaaaaagaa atataatctt catcctggtg tcacggatta
     1381 catggatcgt cttctagatg aaagtgaaag tgctgcttct agtcgagcac catcccctcc
     1441 cccaactgcc tcaaacagta gtaacagcca gtctgagaaa gaagatggca ctataagcaa
     1501 tagtaatcaa aatggggtgt catctaacgg accaggtgaa acattaaaca aagaagaagt
     1561 gaaagttgaa gggttacatg ttaatggacc aacaggtgga agtaagaaac cacttcacac
     1621 agatatggat actaatggtt atgaaacaga taaccttacc actgacccaa aaattgccca
     1681 tacggctgca agaaatgaaa gtgattttga tgaaaaaagt gagagacctg ccaaaaggcg
     1741 aagggtgaac agcaatggaa aagaaagtcc gggttcttct gaatttttcc aagatgcagt
     1801 ctcacatgga aaatttgaag aacttgaaaa cacagatgac taaattttag acttatttta
     1861 ctttctttgg agtaaattct ggtgtgacta aagttttcag ggttgatggg tgaccttaaa
     1921 aagttgactt ccttgaagca gttggttaaa aatttgaatt gtcctaactt tagtaaataa
     1981 gatttcataa ttctgccttt tgcagacttt ttactttaaa attgtgaagg cccttttaag
     2041 gatatataac aaatagttta gtaaatttga aagatatatc tgtaccttct catttgatgt
     2101 attaatccta aaatttcact acaaggtact ttttgcttag tttgatggca gagaagaaaa
     2161 aaacaagttc aaatttctga ttaacaccaa tttttctgag tttcttgaaa tgtcttttat
     2221 gacatttttc ttctccatac aaattgagtt atcattatta aggaaaccct tatgaatcct
     2281 gaaagttatg ctagcatgat ttttttatat atagaagttt aaaaataaac caagtcaggt
     2341 ttgtatatgt aaaattgttg acatcaatga tgtctttcca tattcttatc tgggcttaag
     2401 aaatacattc tgtatttttc cagattcttt gtagcctttg gaagattttt acagtacata
     2461 tgtcttgact gagctgtcct ttcttaatac aaaagcttgt ataattttct taacttgtac
     2521 agttggtaaa cttttatgag aggaattgat attctgagtc tgtcagcttt cattttattt
     2581 tgctaaggtt tttctaatga atttttaagt gtttgtgtag taactaagtc atgtttctta
     2641 tatccaggtg gtaaaagcat tcataaagga ttgtgaacat ttgttttttt caagtttcta
     2701 cttaaggaca aatagtttga gaactctgaa attaagcatg atacttagat cacatagttt
     2761 gttttgcatt tgctataatt ttcaaaatta tttttgaatc aagacaaaag tttaatgttg
     2821 gcttaagtgc ttaaatgtat catgctgacc agaatcctgt tcagttattt ttatatgcat
     2881 tacaaaattt cccatttttg cattaaataa acaggggaaa aggtcaagtg atacttagat
     2941 gttggcacac acaaggagtt ggcaggcaac agtattgatt ttatgaggaa aaagtgataa
     3001 agtcagaagg ttttagaaac ttccagttaa cagtccagct tttcagattt gatagtgtat
     3061 ttccaaaatg aaaataagat attcagtaac cactgctctg tgtgattaca aataggatca
     3121 tccatttgca tagccttaca atagtgccat tttattttta gtgcaaaatt cttgtttaaa
     3181 aaatgtagtt ttatacagct gatagaccaa cctatatcca aacttttata aaagattatt
     3241 aactattctt gttttatcac acgggcatac cccaaatgct tctactgatt cattttcagc
     3301 catcaaagag ccaatgcctt tttaaaataa atcttctgtg gtcttgtttt taatggctca
     3361 actgtctaat gcaattgagt agaggtttgc agtgagaaat tatggtttag gccttatccc
     3421 ccatgaagta ttactattaa cctatgttca gactgcttcc ctccaccaat gtgaacaact
     3481 ttttctcccc aaacagtgtt aaaagccact ttacaacact tgacttcata tgatgtagat
     3541 tcattgttgt tacatacaca tccaagtaaa tcaaagtttt gggtggaagt gttgagaagc
     3601 gtgaacaact tcttgttttt gttttaccta gaacattaat ttatccagaa tggcagcttt
     3661 tgcagatggt cactatccat tttctaaatc agattttatt atacgaatcc aaagtgtcct
     3721 agctctttgt caaaggtggt ctatagaaat agtgatgatg aactttaagt tgctgcaata
     3781 ttagagttgc cattttcacc tttttttttg aaagatgcat tttgtttgca ggtttgtgaa
     3841 gttcttgcag actaacatta caggaacatt ttaaataaat tctcaggcat gtttgcaaat
     3901 acggcacatg ttgtatacat gttaggaaat tttacttttc ttgatctttt taaagtatgc
     3961 ctaatgaaag acattccact attataatac ataatgctca gcttttcata gagaaatatt
     4021 taattgtatt ttatgtttat acaggtattt cacacagtac tttgttcttc ataacgcagc
     4081 cactataact tgatgtcatt gcactacttt aaatattttt agtaatacca tgaatttaat
     4141 ttgcttaaga tttagtacat ttcataactc ttgaactctt gacaaattgc attgggaaaa
     4201 gaaggcttcg ttaatagtta cttagtctcc ctcaccccat acctaccccc agcaaagcac
     4261 tatctgtctt catttggaat ggttttctgt tttatgatgt gctttcaaaa gagttcaaaa
     4321 tttgtaactc agttcaacac aagtctgttg agctttcaaa tgtatttgaa gtaatattca
     4381 aataggcatt taaaattatg aattagatgt tttaaaattt atgcatagta attttgcact
     4441 attaggaaat tcccttcccc tattccctgt ctgccattct gaatatgctt attaaaatat
     4501 ttttttaaac ata
//
LOCUS       XM_032615008            4470 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X2, mRNA.
ACCESSION   XM_032615008
VERSION     XM_032615008.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4470
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4470
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 12 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             64..1800
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X2"
                     /protein_id="XP_032470899.1"
                     /db_xref="GeneID:116744931"
                     /translation="MDGASSGGGGSSGGGGGSGGSGYGVVARFSQCLAEFRTWLRTNW
                     LRFNADKTDVMLCLRTADGPIISRIWPSVESSSPGGSATSDDHEFDPSADMLVHDFDD
                     ERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEEEEEE
                     GEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRR
                     CKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDD
                     QLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTE
                     EALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAF
                     YYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASN
                     SSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGLHVNGPTGGSKKPLHTDMD
                     TNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVNSNGKESPGSSEFFQDAVS
                     HGKFEELENTDD"
     misc_feature    805..954
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1123..1257
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1123..1125,1213..1218,1222..1227,1231..1239,
                     1243..1251)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1285..>1725
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 aggaggcggg cggcccgggc cctaggcccc tcccaggctc tgagtctccc gggctgcagg
       61 cggatggatg gggcttcttc aggcggcggc ggcagcagcg gaggtggcgg cggcagcggc
      121 ggcagcggct atggtgtggt ggctcgattc tcccagtgcc tggctgagtt tcggacgtgg
      181 ttaagaacca actggttgag gttcaatgca gacaagacgg atgtgatgct gtgtttgaga
      241 actgctgatg ggccaataat ttccagaatt tggccatctg ttgagtcttc aagtccagga
      301 ggttcagcaa catcagatga ccatgaattt gatccatcag ctgacatgct ggttcatgat
      361 tttgatgatg aacgcacatt agaagaggaa gaaatgatgg aaggagaaac aaacttcagt
      421 tctgaaatag aggatcttgc aagggaaggc gacatgccaa ttcatgaact tctcagcctt
      481 tatggttatg atagtactat tcgactacct gaggaagatg aggaggagga ggaggaggaa
      541 gaaggtgaag atgatgaaga tgctgataat gatgataaca gtggctgtag tggggaaaat
      601 aaagaagaga atataaaaga ttcctcaggt caagaggatg aaactcagtc ttccaatgat
      661 gatccatcac aatctgttgc ttctcaagat gcccaggaaa taatccgtcc acgtcgatgt
      721 aaatattttg atacaaatag tgaaatagaa gaagaatctg aagaagatga agattatata
      781 ccatcagaag actggaaaaa ggagattatg gtgggctcca tgtttcaagc agagattcca
      841 gttggcatct gtagatacaa agaaaatgaa aaagtatatg aaaatgatga tcagctcctg
      901 tgggaccctg agtacttacc ggaagacaaa gtgattgtat ttcttaagga tgcatctaga
      961 agaacaggtg atgagaaagg tgtagaagca attcctgaag gatctcacat aaaagacaat
     1021 gaacaggcat tatatgaatt agttaaatgc aattttgata cagaagaagc attaagaaga
     1081 ttaagattta atgtaaaagc agctagagag gaattatctg tttggacaga ggaagagtgt
     1141 agaaattttg aacaagggtt gaaggcctat ggaaaggact ttcatttgat tcaggctaat
     1201 aaagttcgaa caaggtcagt tggtgaatgt gtagcattct attatatgtg gaaaaaatct
     1261 gaacgttacg atttctttgc tcagcaaacg cgatttggaa aaaagaaata taatcttcat
     1321 cctggtgtca cggattacat ggatcgtctt ctagatgaaa gtgaaagtgc tgcttctagt
     1381 cgagcaccat cccctccccc aactgcctca aacagtagta acagccagtc tgagaaagaa
     1441 gatggcacta taagcaatag taatcaaaat ggggtgtcat ctaacggacc aggtgaaaca
     1501 ttaaacaaag aagaagtgaa agttgaaggg ttacatgtta atggaccaac aggtggaagt
     1561 aagaaaccac ttcacacaga tatggatact aatggttatg aaacagataa ccttaccact
     1621 gacccaaaaa ttgcccatac ggctgcaaga aatgaaagtg attttgatga aaaaagtgag
     1681 agacctgcca aaaggcgaag ggtgaacagc aatggaaaag aaagtccggg ttcttctgaa
     1741 tttttccaag atgcagtctc acatggaaaa tttgaagaac ttgaaaacac agatgactaa
     1801 attttagact tattttactt tctttggagt aaattctggt gtgactaaag ttttcagggt
     1861 tgatgggtga ccttaaaaag ttgacttcct tgaagcagtt ggttaaaaat ttgaattgtc
     1921 ctaactttag taaataagat ttcataattc tgccttttgc agacttttta ctttaaaatt
     1981 gtgaaggccc ttttaaggat atataacaaa tagtttagta aatttgaaag atatatctgt
     2041 accttctcat ttgatgtatt aatcctaaaa tttcactaca aggtactttt tgcttagttt
     2101 gatggcagag aagaaaaaaa caagttcaaa tttctgatta acaccaattt ttctgagttt
     2161 cttgaaatgt cttttatgac atttttcttc tccatacaaa ttgagttatc attattaagg
     2221 aaacccttat gaatcctgaa agttatgcta gcatgatttt tttatatata gaagtttaaa
     2281 aataaaccaa gtcaggtttg tatatgtaaa attgttgaca tcaatgatgt ctttccatat
     2341 tcttatctgg gcttaagaaa tacattctgt atttttccag attctttgta gcctttggaa
     2401 gatttttaca gtacatatgt cttgactgag ctgtcctttc ttaatacaaa agcttgtata
     2461 attttcttaa cttgtacagt tggtaaactt ttatgagagg aattgatatt ctgagtctgt
     2521 cagctttcat tttattttgc taaggttttt ctaatgaatt tttaagtgtt tgtgtagtaa
     2581 ctaagtcatg tttcttatat ccaggtggta aaagcattca taaaggattg tgaacatttg
     2641 tttttttcaa gtttctactt aaggacaaat agtttgagaa ctctgaaatt aagcatgata
     2701 cttagatcac atagtttgtt ttgcatttgc tataattttc aaaattattt ttgaatcaag
     2761 acaaaagttt aatgttggct taagtgctta aatgtatcat gctgaccaga atcctgttca
     2821 gttattttta tatgcattac aaaatttccc atttttgcat taaataaaca ggggaaaagg
     2881 tcaagtgata cttagatgtt ggcacacaca aggagttggc aggcaacagt attgatttta
     2941 tgaggaaaaa gtgataaagt cagaaggttt tagaaacttc cagttaacag tccagctttt
     3001 cagatttgat agtgtatttc caaaatgaaa ataagatatt cagtaaccac tgctctgtgt
     3061 gattacaaat aggatcatcc atttgcatag ccttacaata gtgccatttt atttttagtg
     3121 caaaattctt gtttaaaaaa tgtagtttta tacagctgat agaccaacct atatccaaac
     3181 ttttataaaa gattattaac tattcttgtt ttatcacacg ggcatacccc aaatgcttct
     3241 actgattcat tttcagccat caaagagcca atgccttttt aaaataaatc ttctgtggtc
     3301 ttgtttttaa tggctcaact gtctaatgca attgagtaga ggtttgcagt gagaaattat
     3361 ggtttaggcc ttatccccca tgaagtatta ctattaacct atgttcagac tgcttccctc
     3421 caccaatgtg aacaactttt tctccccaaa cagtgttaaa agccacttta caacacttga
     3481 cttcatatga tgtagattca ttgttgttac atacacatcc aagtaaatca aagttttggg
     3541 tggaagtgtt gagaagcgtg aacaacttct tgtttttgtt ttacctagaa cattaattta
     3601 tccagaatgg cagcttttgc agatggtcac tatccatttt ctaaatcaga ttttattata
     3661 cgaatccaaa gtgtcctagc tctttgtcaa aggtggtcta tagaaatagt gatgatgaac
     3721 tttaagttgc tgcaatatta gagttgccat tttcaccttt ttttttgaaa gatgcatttt
     3781 gtttgcaggt ttgtgaagtt cttgcagact aacattacag gaacatttta aataaattct
     3841 caggcatgtt tgcaaatacg gcacatgttg tatacatgtt aggaaatttt acttttcttg
     3901 atctttttaa agtatgccta atgaaagaca ttccactatt ataatacata atgctcagct
     3961 tttcatagag aaatatttaa ttgtatttta tgtttataca ggtatttcac acagtacttt
     4021 gttcttcata acgcagccac tataacttga tgtcattgca ctactttaaa tatttttagt
     4081 aataccatga atttaatttg cttaagattt agtacatttc ataactcttg aactcttgac
     4141 aaattgcatt gggaaaagaa ggcttcgtta atagttactt agtctccctc accccatacc
     4201 tacccccagc aaagcactat ctgtcttcat ttggaatggt tttctgtttt atgatgtgct
     4261 ttcaaaagag ttcaaaattt gtaactcagt tcaacacaag tctgttgagc tttcaaatgt
     4321 atttgaagta atattcaaat aggcatttaa aattatgaat tagatgtttt aaaatttatg
     4381 catagtaatt ttgcactatt aggaaattcc cttcccctat tccctgtctg ccattctgaa
     4441 tatgcttatt aaaatatttt tttaaacata
//
LOCUS       XM_032615017            4471 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X3, mRNA.
ACCESSION   XM_032615017
VERSION     XM_032615017.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4471
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4471
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             65..1801
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X3"
                     /protein_id="XP_032470908.1"
                     /db_xref="GeneID:116744931"
                     /translation="MDGASSGGGGSSGGGGGSGGSGYGVVARFSQCLAEFRTWLRTNW
                     LRFNADKTDVMLPSVESSSPGGSATSDDHEFDPSADMLVHDFDDERTLEEEEMMEGET
                     NFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEEEEEEGEDDEDADNDDNSG
                     CSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEIEEES
                     EEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKDEAERREVTCWGHTVYENDD
                     QLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTE
                     EALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAF
                     YYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASN
                     SSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGLHVNGPTGGSKKPLHTDMD
                     TNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVNSNGKESPGSSEFFQDAVS
                     HGKFEELENTDD"
     misc_feature    764..955
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1124..1258
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1124..1126,1214..1219,1223..1228,1232..1240,
                     1244..1252)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1286..>1726
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 aaggaggcgg gcggcccggg ccctaggccc ctcccaggct ctgagtctcc cgggctgcag
       61 gcggatggat ggggcttctt caggcggcgg cggcagcagc ggaggtggcg gcggcagcgg
      121 cggcagcggc tatggtgtgg tggctcgatt ctcccagtgc ctggctgagt ttcggacgtg
      181 gttaagaacc aactggttga ggttcaatgc agacaagacg gatgtgatgc tgccatctgt
      241 tgagtcttca agtccaggag gttcagcaac atcagatgac catgaatttg atccatcagc
      301 tgacatgctg gttcatgatt ttgatgatga acgcacatta gaagaggaag aaatgatgga
      361 aggagaaaca aacttcagtt ctgaaataga ggatcttgca agggaaggcg acatgccaat
      421 tcatgaactt ctcagccttt atggttatga tagtactatt cgactacctg aggaagatga
      481 ggaggaggag gaggaggaag aaggtgaaga tgatgaagat gctgataatg atgataacag
      541 tggctgtagt ggggaaaata aagaagagaa tataaaagat tcctcaggtc aagaggatga
      601 aactcagtct tccaatgatg atccatcaca atctgttgct tctcaagatg cccaggaaat
      661 aatccgtcca cgtcgatgta aatattttga tacaaatagt gaaatagaag aagaatctga
      721 agaagatgaa gattatatac catcagaaga ctggaaaaag gagattatgg tgggctccat
      781 gtttcaagca gagattccag ttggcatctg tagatacaaa gaaaatgaaa aagatgaggc
      841 agaaagaagg gaagtaactt gctggggtca tacagtatat gaaaatgatg atcagctcct
      901 gtgggaccct gagtacttac cggaagacaa agtgattgta tttcttaagg atgcatctag
      961 aagaacaggt gatgagaaag gtgtagaagc aattcctgaa ggatctcaca taaaagacaa
     1021 tgaacaggca ttatatgaat tagttaaatg caattttgat acagaagaag cattaagaag
     1081 attaagattt aatgtaaaag cagctagaga ggaattatct gtttggacag aggaagagtg
     1141 tagaaatttt gaacaagggt tgaaggccta tggaaaggac tttcatttga ttcaggctaa
     1201 taaagttcga acaaggtcag ttggtgaatg tgtagcattc tattatatgt ggaaaaaatc
     1261 tgaacgttac gatttctttg ctcagcaaac gcgatttgga aaaaagaaat ataatcttca
     1321 tcctggtgtc acggattaca tggatcgtct tctagatgaa agtgaaagtg ctgcttctag
     1381 tcgagcacca tcccctcccc caactgcctc aaacagtagt aacagccagt ctgagaaaga
     1441 agatggcact ataagcaata gtaatcaaaa tggggtgtca tctaacggac caggtgaaac
     1501 attaaacaaa gaagaagtga aagttgaagg gttacatgtt aatggaccaa caggtggaag
     1561 taagaaacca cttcacacag atatggatac taatggttat gaaacagata accttaccac
     1621 tgacccaaaa attgcccata cggctgcaag aaatgaaagt gattttgatg aaaaaagtga
     1681 gagacctgcc aaaaggcgaa gggtgaacag caatggaaaa gaaagtccgg gttcttctga
     1741 atttttccaa gatgcagtct cacatggaaa atttgaagaa cttgaaaaca cagatgacta
     1801 aattttagac ttattttact ttctttggag taaattctgg tgtgactaaa gttttcaggg
     1861 ttgatgggtg accttaaaaa gttgacttcc ttgaagcagt tggttaaaaa tttgaattgt
     1921 cctaacttta gtaaataaga tttcataatt ctgccttttg cagacttttt actttaaaat
     1981 tgtgaaggcc cttttaagga tatataacaa atagtttagt aaatttgaaa gatatatctg
     2041 taccttctca tttgatgtat taatcctaaa atttcactac aaggtacttt ttgcttagtt
     2101 tgatggcaga gaagaaaaaa acaagttcaa atttctgatt aacaccaatt tttctgagtt
     2161 tcttgaaatg tcttttatga catttttctt ctccatacaa attgagttat cattattaag
     2221 gaaaccctta tgaatcctga aagttatgct agcatgattt ttttatatat agaagtttaa
     2281 aaataaacca agtcaggttt gtatatgtaa aattgttgac atcaatgatg tctttccata
     2341 ttcttatctg ggcttaagaa atacattctg tatttttcca gattctttgt agcctttgga
     2401 agatttttac agtacatatg tcttgactga gctgtccttt cttaatacaa aagcttgtat
     2461 aattttctta acttgtacag ttggtaaact tttatgagag gaattgatat tctgagtctg
     2521 tcagctttca ttttattttg ctaaggtttt tctaatgaat ttttaagtgt ttgtgtagta
     2581 actaagtcat gtttcttata tccaggtggt aaaagcattc ataaaggatt gtgaacattt
     2641 gtttttttca agtttctact taaggacaaa tagtttgaga actctgaaat taagcatgat
     2701 acttagatca catagtttgt tttgcatttg ctataatttt caaaattatt tttgaatcaa
     2761 gacaaaagtt taatgttggc ttaagtgctt aaatgtatca tgctgaccag aatcctgttc
     2821 agttattttt atatgcatta caaaatttcc catttttgca ttaaataaac aggggaaaag
     2881 gtcaagtgat acttagatgt tggcacacac aaggagttgg caggcaacag tattgatttt
     2941 atgaggaaaa agtgataaag tcagaaggtt ttagaaactt ccagttaaca gtccagcttt
     3001 tcagatttga tagtgtattt ccaaaatgaa aataagatat tcagtaacca ctgctctgtg
     3061 tgattacaaa taggatcatc catttgcata gccttacaat agtgccattt tatttttagt
     3121 gcaaaattct tgtttaaaaa atgtagtttt atacagctga tagaccaacc tatatccaaa
     3181 cttttataaa agattattaa ctattcttgt tttatcacac gggcataccc caaatgcttc
     3241 tactgattca ttttcagcca tcaaagagcc aatgcctttt taaaataaat cttctgtggt
     3301 cttgttttta atggctcaac tgtctaatgc aattgagtag aggtttgcag tgagaaatta
     3361 tggtttaggc cttatccccc atgaagtatt actattaacc tatgttcaga ctgcttccct
     3421 ccaccaatgt gaacaacttt ttctccccaa acagtgttaa aagccacttt acaacacttg
     3481 acttcatatg atgtagattc attgttgtta catacacatc caagtaaatc aaagttttgg
     3541 gtggaagtgt tgagaagcgt gaacaacttc ttgtttttgt tttacctaga acattaattt
     3601 atccagaatg gcagcttttg cagatggtca ctatccattt tctaaatcag attttattat
     3661 acgaatccaa agtgtcctag ctctttgtca aaggtggtct atagaaatag tgatgatgaa
     3721 ctttaagttg ctgcaatatt agagttgcca ttttcacctt tttttttgaa agatgcattt
     3781 tgtttgcagg tttgtgaagt tcttgcagac taacattaca ggaacatttt aaataaattc
     3841 tcaggcatgt ttgcaaatac ggcacatgtt gtatacatgt taggaaattt tacttttctt
     3901 gatcttttta aagtatgcct aatgaaagac attccactat tataatacat aatgctcagc
     3961 ttttcataga gaaatattta attgtatttt atgtttatac aggtatttca cacagtactt
     4021 tgttcttcat aacgcagcca ctataacttg atgtcattgc actactttaa atatttttag
     4081 taataccatg aatttaattt gcttaagatt tagtacattt cataactctt gaactcttga
     4141 caaattgcat tgggaaaaga aggcttcgtt aatagttact tagtctccct caccccatac
     4201 ctacccccag caaagcacta tctgtcttca tttggaatgg ttttctgttt tatgatgtgc
     4261 tttcaaaaga gttcaaaatt tgtaactcag ttcaacacaa gtctgttgag ctttcaaatg
     4321 tatttgaagt aatattcaaa taggcattta aaattatgaa ttagatgttt taaaatttat
     4381 gcatagtaat tttgcactat taggaaattc ccttccccta ttccctgtct gccattctga
     4441 atatgcttat taaaatattt ttttaaacat a
//
LOCUS       XM_032615027            4429 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X4, mRNA.
ACCESSION   XM_032615027
VERSION     XM_032615027.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4429
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4429
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 13 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             65..1759
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X4"
                     /protein_id="XP_032470918.1"
                     /db_xref="GeneID:116744931"
                     /translation="MDGASSGGGGSSGGGGGSGGSGYGVVARFSQCLAEFRTWLRTNW
                     LRFNADKTDVMLPSVESSSPGGSATSDDHEFDPSADMLVHDFDDERTLEEEEMMEGET
                     NFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEEEEEEGEDDEDADNDDNSG
                     CSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEIEEES
                     EEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKV
                     IVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAR
                     EELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFA
                     QQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDGTIS
                     NSNQNGVSSNGPGETLNKEEVKVEGLHVNGPTGGSKKPLHTDMDTNGYETDNLTTDPK
                     IAHTAARNESDFDEKSERPAKRRRVNSNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    764..913
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1082..1216
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1082..1084,1172..1177,1181..1186,1190..1198,
                     1202..1210)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1244..>1684
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 aaggaggcgg gcggcccggg ccctaggccc ctcccaggct ctgagtctcc cgggctgcag
       61 gcggatggat ggggcttctt caggcggcgg cggcagcagc ggaggtggcg gcggcagcgg
      121 cggcagcggc tatggtgtgg tggctcgatt ctcccagtgc ctggctgagt ttcggacgtg
      181 gttaagaacc aactggttga ggttcaatgc agacaagacg gatgtgatgc tgccatctgt
      241 tgagtcttca agtccaggag gttcagcaac atcagatgac catgaatttg atccatcagc
      301 tgacatgctg gttcatgatt ttgatgatga acgcacatta gaagaggaag aaatgatgga
      361 aggagaaaca aacttcagtt ctgaaataga ggatcttgca agggaaggcg acatgccaat
      421 tcatgaactt ctcagccttt atggttatga tagtactatt cgactacctg aggaagatga
      481 ggaggaggag gaggaggaag aaggtgaaga tgatgaagat gctgataatg atgataacag
      541 tggctgtagt ggggaaaata aagaagagaa tataaaagat tcctcaggtc aagaggatga
      601 aactcagtct tccaatgatg atccatcaca atctgttgct tctcaagatg cccaggaaat
      661 aatccgtcca cgtcgatgta aatattttga tacaaatagt gaaatagaag aagaatctga
      721 agaagatgaa gattatatac catcagaaga ctggaaaaag gagattatgg tgggctccat
      781 gtttcaagca gagattccag ttggcatctg tagatacaaa gaaaatgaaa aagtatatga
      841 aaatgatgat cagctcctgt gggaccctga gtacttaccg gaagacaaag tgattgtatt
      901 tcttaaggat gcatctagaa gaacaggtga tgagaaaggt gtagaagcaa ttcctgaagg
      961 atctcacata aaagacaatg aacaggcatt atatgaatta gttaaatgca attttgatac
     1021 agaagaagca ttaagaagat taagatttaa tgtaaaagca gctagagagg aattatctgt
     1081 ttggacagag gaagagtgta gaaattttga acaagggttg aaggcctatg gaaaggactt
     1141 tcatttgatt caggctaata aagttcgaac aaggtcagtt ggtgaatgtg tagcattcta
     1201 ttatatgtgg aaaaaatctg aacgttacga tttctttgct cagcaaacgc gatttggaaa
     1261 aaagaaatat aatcttcatc ctggtgtcac ggattacatg gatcgtcttc tagatgaaag
     1321 tgaaagtgct gcttctagtc gagcaccatc ccctccccca actgcctcaa acagtagtaa
     1381 cagccagtct gagaaagaag atggcactat aagcaatagt aatcaaaatg gggtgtcatc
     1441 taacggacca ggtgaaacat taaacaaaga agaagtgaaa gttgaagggt tacatgttaa
     1501 tggaccaaca ggtggaagta agaaaccact tcacacagat atggatacta atggttatga
     1561 aacagataac cttaccactg acccaaaaat tgcccatacg gctgcaagaa atgaaagtga
     1621 ttttgatgaa aaaagtgaga gacctgccaa aaggcgaagg gtgaacagca atggaaaaga
     1681 aagtccgggt tcttctgaat ttttccaaga tgcagtctca catggaaaat ttgaagaact
     1741 tgaaaacaca gatgactaaa ttttagactt attttacttt ctttggagta aattctggtg
     1801 tgactaaagt tttcagggtt gatgggtgac cttaaaaagt tgacttcctt gaagcagttg
     1861 gttaaaaatt tgaattgtcc taactttagt aaataagatt tcataattct gccttttgca
     1921 gactttttac tttaaaattg tgaaggccct tttaaggata tataacaaat agtttagtaa
     1981 atttgaaaga tatatctgta ccttctcatt tgatgtatta atcctaaaat ttcactacaa
     2041 ggtacttttt gcttagtttg atggcagaga agaaaaaaac aagttcaaat ttctgattaa
     2101 caccaatttt tctgagtttc ttgaaatgtc ttttatgaca tttttcttct ccatacaaat
     2161 tgagttatca ttattaagga aacccttatg aatcctgaaa gttatgctag catgattttt
     2221 ttatatatag aagtttaaaa ataaaccaag tcaggtttgt atatgtaaaa ttgttgacat
     2281 caatgatgtc tttccatatt cttatctggg cttaagaaat acattctgta tttttccaga
     2341 ttctttgtag cctttggaag atttttacag tacatatgtc ttgactgagc tgtcctttct
     2401 taatacaaaa gcttgtataa ttttcttaac ttgtacagtt ggtaaacttt tatgagagga
     2461 attgatattc tgagtctgtc agctttcatt ttattttgct aaggtttttc taatgaattt
     2521 ttaagtgttt gtgtagtaac taagtcatgt ttcttatatc caggtggtaa aagcattcat
     2581 aaaggattgt gaacatttgt ttttttcaag tttctactta aggacaaata gtttgagaac
     2641 tctgaaatta agcatgatac ttagatcaca tagtttgttt tgcatttgct ataattttca
     2701 aaattatttt tgaatcaaga caaaagttta atgttggctt aagtgcttaa atgtatcatg
     2761 ctgaccagaa tcctgttcag ttatttttat atgcattaca aaatttccca tttttgcatt
     2821 aaataaacag gggaaaaggt caagtgatac ttagatgttg gcacacacaa ggagttggca
     2881 ggcaacagta ttgattttat gaggaaaaag tgataaagtc agaaggtttt agaaacttcc
     2941 agttaacagt ccagcttttc agatttgata gtgtatttcc aaaatgaaaa taagatattc
     3001 agtaaccact gctctgtgtg attacaaata ggatcatcca tttgcatagc cttacaatag
     3061 tgccatttta tttttagtgc aaaattcttg tttaaaaaat gtagttttat acagctgata
     3121 gaccaaccta tatccaaact tttataaaag attattaact attcttgttt tatcacacgg
     3181 gcatacccca aatgcttcta ctgattcatt ttcagccatc aaagagccaa tgccttttta
     3241 aaataaatct tctgtggtct tgtttttaat ggctcaactg tctaatgcaa ttgagtagag
     3301 gtttgcagtg agaaattatg gtttaggcct tatcccccat gaagtattac tattaaccta
     3361 tgttcagact gcttccctcc accaatgtga acaacttttt ctccccaaac agtgttaaaa
     3421 gccactttac aacacttgac ttcatatgat gtagattcat tgttgttaca tacacatcca
     3481 agtaaatcaa agttttgggt ggaagtgttg agaagcgtga acaacttctt gtttttgttt
     3541 tacctagaac attaatttat ccagaatggc agcttttgca gatggtcact atccattttc
     3601 taaatcagat tttattatac gaatccaaag tgtcctagct ctttgtcaaa ggtggtctat
     3661 agaaatagtg atgatgaact ttaagttgct gcaatattag agttgccatt ttcacctttt
     3721 tttttgaaag atgcattttg tttgcaggtt tgtgaagttc ttgcagacta acattacagg
     3781 aacattttaa ataaattctc aggcatgttt gcaaatacgg cacatgttgt atacatgtta
     3841 ggaaatttta cttttcttga tctttttaaa gtatgcctaa tgaaagacat tccactatta
     3901 taatacataa tgctcagctt ttcatagaga aatatttaat tgtattttat gtttatacag
     3961 gtatttcaca cagtactttg ttcttcataa cgcagccact ataacttgat gtcattgcac
     4021 tactttaaat atttttagta ataccatgaa tttaatttgc ttaagattta gtacatttca
     4081 taactcttga actcttgaca aattgcattg ggaaaagaag gcttcgttaa tagttactta
     4141 gtctccctca ccccatacct acccccagca aagcactatc tgtcttcatt tggaatggtt
     4201 ttctgtttta tgatgtgctt tcaaaagagt tcaaaatttg taactcagtt caacacaagt
     4261 ctgttgagct ttcaaatgta tttgaagtaa tattcaaata ggcatttaaa attatgaatt
     4321 agatgtttta aaatttatgc atagtaattt tgcactatta ggaaattccc ttcccctatt
     4381 ccctgtctgc cattctgaat atgcttatta aaatattttt ttaaacata
//
LOCUS       XM_032615036            4645 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X5, mRNA.
ACCESSION   XM_032615036
VERSION     XM_032615036.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4645
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4645
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             347..1975
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X5"
                     /protein_id="XP_032470927.1"
                     /db_xref="GeneID:116744931"
                     /translation="MFMFNWFTDCLWTLFLSYYQPSVESSSPGGSATSDDHEFDPSAD
                     MLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEED
                     EEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDA
                     QEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKEN
                     EKDEAERREVTCWGHTVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPE
                     GSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYG
                     KDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDR
                     LLDESESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVK
                     VEGLHVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKR
                     RRVNSNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    938..1129
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1298..1432
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1298..1300,1388..1393,1397..1402,1406..1414,
                     1418..1426)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1460..>1900
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 gactagaaca aggaggcggg cggcccgggc cctaggcccc tcccaggctc tgagtctccc
       61 gggctgcagg cggatggatg gggcttcttc aggcggcggc ggcagcagcg gaggtggcgg
      121 cggcagcggc ggcagcggct atggtgtggt ggctcgattc tcccagtgcc tggctgagtt
      181 tcggacgtgg ttaagaacca actggttgag gttcaatgca gacaagacgg atgtgatgct
      241 gatgtttcca tcaagcatct caaagtgaaa agtgtttgaa tatgaactgg cttatacaaa
      301 agtcatttct atttcgagtc caaaggacta agaaaatgtg catcagatgt ttatgtttaa
      361 ttggtttaca gactgtctgt ggactctttt cctgtcatat taccagccat ctgttgagtc
      421 ttcaagtcca ggaggttcag caacatcaga tgaccatgaa tttgatccat cagctgacat
      481 gctggttcat gattttgatg atgaacgcac attagaagag gaagaaatga tggaaggaga
      541 aacaaacttc agttctgaaa tagaggatct tgcaagggaa ggcgacatgc caattcatga
      601 acttctcagc ctttatggtt atgatagtac tattcgacta cctgaggaag atgaggagga
      661 ggaggaggag gaagaaggtg aagatgatga agatgctgat aatgatgata acagtggctg
      721 tagtggggaa aataaagaag agaatataaa agattcctca ggtcaagagg atgaaactca
      781 gtcttccaat gatgatccat cacaatctgt tgcttctcaa gatgcccagg aaataatccg
      841 tccacgtcga tgtaaatatt ttgatacaaa tagtgaaata gaagaagaat ctgaagaaga
      901 tgaagattat ataccatcag aagactggaa aaaggagatt atggtgggct ccatgtttca
      961 agcagagatt ccagttggca tctgtagata caaagaaaat gaaaaagatg aggcagaaag
     1021 aagggaagta acttgctggg gtcatacagt atatgaaaat gatgatcagc tcctgtggga
     1081 ccctgagtac ttaccggaag acaaagtgat tgtatttctt aaggatgcat ctagaagaac
     1141 aggtgatgag aaaggtgtag aagcaattcc tgaaggatct cacataaaag acaatgaaca
     1201 ggcattatat gaattagtta aatgcaattt tgatacagaa gaagcattaa gaagattaag
     1261 atttaatgta aaagcagcta gagaggaatt atctgtttgg acagaggaag agtgtagaaa
     1321 ttttgaacaa gggttgaagg cctatggaaa ggactttcat ttgattcagg ctaataaagt
     1381 tcgaacaagg tcagttggtg aatgtgtagc attctattat atgtggaaaa aatctgaacg
     1441 ttacgatttc tttgctcagc aaacgcgatt tggaaaaaag aaatataatc ttcatcctgg
     1501 tgtcacggat tacatggatc gtcttctaga tgaaagtgaa agtgctgctt ctagtcgagc
     1561 accatcccct cccccaactg cctcaaacag tagtaacagc cagtctgaga aagaagatgg
     1621 cactataagc aatagtaatc aaaatggggt gtcatctaac ggaccaggtg aaacattaaa
     1681 caaagaagaa gtgaaagttg aagggttaca tgttaatgga ccaacaggtg gaagtaagaa
     1741 accacttcac acagatatgg atactaatgg ttatgaaaca gataacctta ccactgaccc
     1801 aaaaattgcc catacggctg caagaaatga aagtgatttt gatgaaaaaa gtgagagacc
     1861 tgccaaaagg cgaagggtga acagcaatgg aaaagaaagt ccgggttctt ctgaattttt
     1921 ccaagatgca gtctcacatg gaaaatttga agaacttgaa aacacagatg actaaatttt
     1981 agacttattt tactttcttt ggagtaaatt ctggtgtgac taaagttttc agggttgatg
     2041 ggtgacctta aaaagttgac ttccttgaag cagttggtta aaaatttgaa ttgtcctaac
     2101 tttagtaaat aagatttcat aattctgcct tttgcagact ttttacttta aaattgtgaa
     2161 ggccctttta aggatatata acaaatagtt tagtaaattt gaaagatata tctgtacctt
     2221 ctcatttgat gtattaatcc taaaatttca ctacaaggta ctttttgctt agtttgatgg
     2281 cagagaagaa aaaaacaagt tcaaatttct gattaacacc aatttttctg agtttcttga
     2341 aatgtctttt atgacatttt tcttctccat acaaattgag ttatcattat taaggaaacc
     2401 cttatgaatc ctgaaagtta tgctagcatg atttttttat atatagaagt ttaaaaataa
     2461 accaagtcag gtttgtatat gtaaaattgt tgacatcaat gatgtctttc catattctta
     2521 tctgggctta agaaatacat tctgtatttt tccagattct ttgtagcctt tggaagattt
     2581 ttacagtaca tatgtcttga ctgagctgtc ctttcttaat acaaaagctt gtataatttt
     2641 cttaacttgt acagttggta aacttttatg agaggaattg atattctgag tctgtcagct
     2701 ttcattttat tttgctaagg tttttctaat gaatttttaa gtgtttgtgt agtaactaag
     2761 tcatgtttct tatatccagg tggtaaaagc attcataaag gattgtgaac atttgttttt
     2821 ttcaagtttc tacttaagga caaatagttt gagaactctg aaattaagca tgatacttag
     2881 atcacatagt ttgttttgca tttgctataa ttttcaaaat tatttttgaa tcaagacaaa
     2941 agtttaatgt tggcttaagt gcttaaatgt atcatgctga ccagaatcct gttcagttat
     3001 ttttatatgc attacaaaat ttcccatttt tgcattaaat aaacagggga aaaggtcaag
     3061 tgatacttag atgttggcac acacaaggag ttggcaggca acagtattga ttttatgagg
     3121 aaaaagtgat aaagtcagaa ggttttagaa acttccagtt aacagtccag cttttcagat
     3181 ttgatagtgt atttccaaaa tgaaaataag atattcagta accactgctc tgtgtgatta
     3241 caaataggat catccatttg catagcctta caatagtgcc attttatttt tagtgcaaaa
     3301 ttcttgttta aaaaatgtag ttttatacag ctgatagacc aacctatatc caaactttta
     3361 taaaagatta ttaactattc ttgttttatc acacgggcat accccaaatg cttctactga
     3421 ttcattttca gccatcaaag agccaatgcc tttttaaaat aaatcttctg tggtcttgtt
     3481 tttaatggct caactgtcta atgcaattga gtagaggttt gcagtgagaa attatggttt
     3541 aggccttatc ccccatgaag tattactatt aacctatgtt cagactgctt ccctccacca
     3601 atgtgaacaa ctttttctcc ccaaacagtg ttaaaagcca ctttacaaca cttgacttca
     3661 tatgatgtag attcattgtt gttacataca catccaagta aatcaaagtt ttgggtggaa
     3721 gtgttgagaa gcgtgaacaa cttcttgttt ttgttttacc tagaacatta atttatccag
     3781 aatggcagct tttgcagatg gtcactatcc attttctaaa tcagatttta ttatacgaat
     3841 ccaaagtgtc ctagctcttt gtcaaaggtg gtctatagaa atagtgatga tgaactttaa
     3901 gttgctgcaa tattagagtt gccattttca cctttttttt tgaaagatgc attttgtttg
     3961 caggtttgtg aagttcttgc agactaacat tacaggaaca ttttaaataa attctcaggc
     4021 atgtttgcaa atacggcaca tgttgtatac atgttaggaa attttacttt tcttgatctt
     4081 tttaaagtat gcctaatgaa agacattcca ctattataat acataatgct cagcttttca
     4141 tagagaaata tttaattgta ttttatgttt atacaggtat ttcacacagt actttgttct
     4201 tcataacgca gccactataa cttgatgtca ttgcactact ttaaatattt ttagtaatac
     4261 catgaattta atttgcttaa gatttagtac atttcataac tcttgaactc ttgacaaatt
     4321 gcattgggaa aagaaggctt cgttaatagt tacttagtct ccctcacccc atacctaccc
     4381 ccagcaaagc actatctgtc ttcatttgga atggttttct gttttatgat gtgctttcaa
     4441 aagagttcaa aatttgtaac tcagttcaac acaagtctgt tgagctttca aatgtatttg
     4501 aagtaatatt caaataggca tttaaaatta tgaattagat gttttaaaat ttatgcatag
     4561 taattttgca ctattaggaa attcccttcc cctattccct gtctgccatt ctgaatatgc
     4621 ttattaaaat atttttttaa acata
//
LOCUS       XM_032615043            4531 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X6, mRNA.
ACCESSION   XM_032615043
VERSION     XM_032615043.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4531
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4531
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             233..1861
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X5"
                     /protein_id="XP_032470934.1"
                     /db_xref="GeneID:116744931"
                     /translation="MFMFNWFTDCLWTLFLSYYQPSVESSSPGGSATSDDHEFDPSAD
                     MLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEED
                     EEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDA
                     QEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKEN
                     EKDEAERREVTCWGHTVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPE
                     GSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYG
                     KDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDR
                     LLDESESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVK
                     VEGLHVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKR
                     RRVNSNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    824..1015
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1184..1318
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1184..1186,1274..1279,1283..1288,1292..1300,
                     1304..1312)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1346..>1786
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 cagctctcca tcgccatcca cccccttccc ggactggtct ttgctttggt ggtggtggcg
       61 gcggcggcgc tagtcttccc cggcgtccgc ggcgcgctgg gagtcagctg cggaatggtg
      121 tggtggctcg attctcccag tgcctggctg agtttcggac gtggttaaga accaactggt
      181 tgaggttcaa tgcagacaag acggatgtga tgctgtagaa aatgtgcatc agatgtttat
      241 gtttaattgg tttacagact gtctgtggac tcttttcctg tcatattacc agccatctgt
      301 tgagtcttca agtccaggag gttcagcaac atcagatgac catgaatttg atccatcagc
      361 tgacatgctg gttcatgatt ttgatgatga acgcacatta gaagaggaag aaatgatgga
      421 aggagaaaca aacttcagtt ctgaaataga ggatcttgca agggaaggcg acatgccaat
      481 tcatgaactt ctcagccttt atggttatga tagtactatt cgactacctg aggaagatga
      541 ggaggaggag gaggaggaag aaggtgaaga tgatgaagat gctgataatg atgataacag
      601 tggctgtagt ggggaaaata aagaagagaa tataaaagat tcctcaggtc aagaggatga
      661 aactcagtct tccaatgatg atccatcaca atctgttgct tctcaagatg cccaggaaat
      721 aatccgtcca cgtcgatgta aatattttga tacaaatagt gaaatagaag aagaatctga
      781 agaagatgaa gattatatac catcagaaga ctggaaaaag gagattatgg tgggctccat
      841 gtttcaagca gagattccag ttggcatctg tagatacaaa gaaaatgaaa aagatgaggc
      901 agaaagaagg gaagtaactt gctggggtca tacagtatat gaaaatgatg atcagctcct
      961 gtgggaccct gagtacttac cggaagacaa agtgattgta tttcttaagg atgcatctag
     1021 aagaacaggt gatgagaaag gtgtagaagc aattcctgaa ggatctcaca taaaagacaa
     1081 tgaacaggca ttatatgaat tagttaaatg caattttgat acagaagaag cattaagaag
     1141 attaagattt aatgtaaaag cagctagaga ggaattatct gtttggacag aggaagagtg
     1201 tagaaatttt gaacaagggt tgaaggccta tggaaaggac tttcatttga ttcaggctaa
     1261 taaagttcga acaaggtcag ttggtgaatg tgtagcattc tattatatgt ggaaaaaatc
     1321 tgaacgttac gatttctttg ctcagcaaac gcgatttgga aaaaagaaat ataatcttca
     1381 tcctggtgtc acggattaca tggatcgtct tctagatgaa agtgaaagtg ctgcttctag
     1441 tcgagcacca tcccctcccc caactgcctc aaacagtagt aacagccagt ctgagaaaga
     1501 agatggcact ataagcaata gtaatcaaaa tggggtgtca tctaacggac caggtgaaac
     1561 attaaacaaa gaagaagtga aagttgaagg gttacatgtt aatggaccaa caggtggaag
     1621 taagaaacca cttcacacag atatggatac taatggttat gaaacagata accttaccac
     1681 tgacccaaaa attgcccata cggctgcaag aaatgaaagt gattttgatg aaaaaagtga
     1741 gagacctgcc aaaaggcgaa gggtgaacag caatggaaaa gaaagtccgg gttcttctga
     1801 atttttccaa gatgcagtct cacatggaaa atttgaagaa cttgaaaaca cagatgacta
     1861 aattttagac ttattttact ttctttggag taaattctgg tgtgactaaa gttttcaggg
     1921 ttgatgggtg accttaaaaa gttgacttcc ttgaagcagt tggttaaaaa tttgaattgt
     1981 cctaacttta gtaaataaga tttcataatt ctgccttttg cagacttttt actttaaaat
     2041 tgtgaaggcc cttttaagga tatataacaa atagtttagt aaatttgaaa gatatatctg
     2101 taccttctca tttgatgtat taatcctaaa atttcactac aaggtacttt ttgcttagtt
     2161 tgatggcaga gaagaaaaaa acaagttcaa atttctgatt aacaccaatt tttctgagtt
     2221 tcttgaaatg tcttttatga catttttctt ctccatacaa attgagttat cattattaag
     2281 gaaaccctta tgaatcctga aagttatgct agcatgattt ttttatatat agaagtttaa
     2341 aaataaacca agtcaggttt gtatatgtaa aattgttgac atcaatgatg tctttccata
     2401 ttcttatctg ggcttaagaa atacattctg tatttttcca gattctttgt agcctttgga
     2461 agatttttac agtacatatg tcttgactga gctgtccttt cttaatacaa aagcttgtat
     2521 aattttctta acttgtacag ttggtaaact tttatgagag gaattgatat tctgagtctg
     2581 tcagctttca ttttattttg ctaaggtttt tctaatgaat ttttaagtgt ttgtgtagta
     2641 actaagtcat gtttcttata tccaggtggt aaaagcattc ataaaggatt gtgaacattt
     2701 gtttttttca agtttctact taaggacaaa tagtttgaga actctgaaat taagcatgat
     2761 acttagatca catagtttgt tttgcatttg ctataatttt caaaattatt tttgaatcaa
     2821 gacaaaagtt taatgttggc ttaagtgctt aaatgtatca tgctgaccag aatcctgttc
     2881 agttattttt atatgcatta caaaatttcc catttttgca ttaaataaac aggggaaaag
     2941 gtcaagtgat acttagatgt tggcacacac aaggagttgg caggcaacag tattgatttt
     3001 atgaggaaaa agtgataaag tcagaaggtt ttagaaactt ccagttaaca gtccagcttt
     3061 tcagatttga tagtgtattt ccaaaatgaa aataagatat tcagtaacca ctgctctgtg
     3121 tgattacaaa taggatcatc catttgcata gccttacaat agtgccattt tatttttagt
     3181 gcaaaattct tgtttaaaaa atgtagtttt atacagctga tagaccaacc tatatccaaa
     3241 cttttataaa agattattaa ctattcttgt tttatcacac gggcataccc caaatgcttc
     3301 tactgattca ttttcagcca tcaaagagcc aatgcctttt taaaataaat cttctgtggt
     3361 cttgttttta atggctcaac tgtctaatgc aattgagtag aggtttgcag tgagaaatta
     3421 tggtttaggc cttatccccc atgaagtatt actattaacc tatgttcaga ctgcttccct
     3481 ccaccaatgt gaacaacttt ttctccccaa acagtgttaa aagccacttt acaacacttg
     3541 acttcatatg atgtagattc attgttgtta catacacatc caagtaaatc aaagttttgg
     3601 gtggaagtgt tgagaagcgt gaacaacttc ttgtttttgt tttacctaga acattaattt
     3661 atccagaatg gcagcttttg cagatggtca ctatccattt tctaaatcag attttattat
     3721 acgaatccaa agtgtcctag ctctttgtca aaggtggtct atagaaatag tgatgatgaa
     3781 ctttaagttg ctgcaatatt agagttgcca ttttcacctt tttttttgaa agatgcattt
     3841 tgtttgcagg tttgtgaagt tcttgcagac taacattaca ggaacatttt aaataaattc
     3901 tcaggcatgt ttgcaaatac ggcacatgtt gtatacatgt taggaaattt tacttttctt
     3961 gatcttttta aagtatgcct aatgaaagac attccactat tataatacat aatgctcagc
     4021 ttttcataga gaaatattta attgtatttt atgtttatac aggtatttca cacagtactt
     4081 tgttcttcat aacgcagcca ctataacttg atgtcattgc actactttaa atatttttag
     4141 taataccatg aatttaattt gcttaagatt tagtacattt cataactctt gaactcttga
     4201 caaattgcat tgggaaaaga aggcttcgtt aatagttact tagtctccct caccccatac
     4261 ctacccccag caaagcacta tctgtcttca tttggaatgg ttttctgttt tatgatgtgc
     4321 tttcaaaaga gttcaaaatt tgtaactcag ttcaacacaa gtctgttgag ctttcaaatg
     4381 tatttgaagt aatattcaaa taggcattta aaattatgaa ttagatgttt taaaatttat
     4441 gcatagtaat tttgcactat taggaaattc ccttccccta ttccctgtct gccattctga
     4501 atatgcttat taaaatattt ttttaaacat a
//
LOCUS       XM_032615051            4528 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X7, mRNA.
ACCESSION   XM_032615051
VERSION     XM_032615051.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4528
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4528
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             230..1858
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X5"
                     /protein_id="XP_032470942.1"
                     /db_xref="GeneID:116744931"
                     /translation="MFMFNWFTDCLWTLFLSYYQPSVESSSPGGSATSDDHEFDPSAD
                     MLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEED
                     EEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDA
                     QEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKEN
                     EKDEAERREVTCWGHTVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPE
                     GSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYG
                     KDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDR
                     LLDESESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVK
                     VEGLHVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKR
                     RRVNSNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    821..1012
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1181..1315
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1181..1183,1271..1276,1280..1285,1289..1297,
                     1301..1309)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1343..>1783
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 cagctctcca tcgccatcca cccccttccc ggactggtct ttgctttggt ggtggtggcg
       61 gcggcggcgc tagtcttccc cggcgtccgc ggcgcgctgg gagtcagctg cggaatggtg
      121 tggtggctcg attctcccag tgcctggctg agtttcggac gtggttaaga accaactggt
      181 tgaggttcaa tgcagacaag acggatgtga tgctgaaaat gtgcatcaga tgtttatgtt
      241 taattggttt acagactgtc tgtggactct tttcctgtca tattaccagc catctgttga
      301 gtcttcaagt ccaggaggtt cagcaacatc agatgaccat gaatttgatc catcagctga
      361 catgctggtt catgattttg atgatgaacg cacattagaa gaggaagaaa tgatggaagg
      421 agaaacaaac ttcagttctg aaatagagga tcttgcaagg gaaggcgaca tgccaattca
      481 tgaacttctc agcctttatg gttatgatag tactattcga ctacctgagg aagatgagga
      541 ggaggaggag gaggaagaag gtgaagatga tgaagatgct gataatgatg ataacagtgg
      601 ctgtagtggg gaaaataaag aagagaatat aaaagattcc tcaggtcaag aggatgaaac
      661 tcagtcttcc aatgatgatc catcacaatc tgttgcttct caagatgccc aggaaataat
      721 ccgtccacgt cgatgtaaat attttgatac aaatagtgaa atagaagaag aatctgaaga
      781 agatgaagat tatataccat cagaagactg gaaaaaggag attatggtgg gctccatgtt
      841 tcaagcagag attccagttg gcatctgtag atacaaagaa aatgaaaaag atgaggcaga
      901 aagaagggaa gtaacttgct ggggtcatac agtatatgaa aatgatgatc agctcctgtg
      961 ggaccctgag tacttaccgg aagacaaagt gattgtattt cttaaggatg catctagaag
     1021 aacaggtgat gagaaaggtg tagaagcaat tcctgaagga tctcacataa aagacaatga
     1081 acaggcatta tatgaattag ttaaatgcaa ttttgataca gaagaagcat taagaagatt
     1141 aagatttaat gtaaaagcag ctagagagga attatctgtt tggacagagg aagagtgtag
     1201 aaattttgaa caagggttga aggcctatgg aaaggacttt catttgattc aggctaataa
     1261 agttcgaaca aggtcagttg gtgaatgtgt agcattctat tatatgtgga aaaaatctga
     1321 acgttacgat ttctttgctc agcaaacgcg atttggaaaa aagaaatata atcttcatcc
     1381 tggtgtcacg gattacatgg atcgtcttct agatgaaagt gaaagtgctg cttctagtcg
     1441 agcaccatcc cctcccccaa ctgcctcaaa cagtagtaac agccagtctg agaaagaaga
     1501 tggcactata agcaatagta atcaaaatgg ggtgtcatct aacggaccag gtgaaacatt
     1561 aaacaaagaa gaagtgaaag ttgaagggtt acatgttaat ggaccaacag gtggaagtaa
     1621 gaaaccactt cacacagata tggatactaa tggttatgaa acagataacc ttaccactga
     1681 cccaaaaatt gcccatacgg ctgcaagaaa tgaaagtgat tttgatgaaa aaagtgagag
     1741 acctgccaaa aggcgaaggg tgaacagcaa tggaaaagaa agtccgggtt cttctgaatt
     1801 tttccaagat gcagtctcac atggaaaatt tgaagaactt gaaaacacag atgactaaat
     1861 tttagactta ttttactttc tttggagtaa attctggtgt gactaaagtt ttcagggttg
     1921 atgggtgacc ttaaaaagtt gacttccttg aagcagttgg ttaaaaattt gaattgtcct
     1981 aactttagta aataagattt cataattctg ccttttgcag actttttact ttaaaattgt
     2041 gaaggccctt ttaaggatat ataacaaata gtttagtaaa tttgaaagat atatctgtac
     2101 cttctcattt gatgtattaa tcctaaaatt tcactacaag gtactttttg cttagtttga
     2161 tggcagagaa gaaaaaaaca agttcaaatt tctgattaac accaattttt ctgagtttct
     2221 tgaaatgtct tttatgacat ttttcttctc catacaaatt gagttatcat tattaaggaa
     2281 acccttatga atcctgaaag ttatgctagc atgatttttt tatatataga agtttaaaaa
     2341 taaaccaagt caggtttgta tatgtaaaat tgttgacatc aatgatgtct ttccatattc
     2401 ttatctgggc ttaagaaata cattctgtat ttttccagat tctttgtagc ctttggaaga
     2461 tttttacagt acatatgtct tgactgagct gtcctttctt aatacaaaag cttgtataat
     2521 tttcttaact tgtacagttg gtaaactttt atgagaggaa ttgatattct gagtctgtca
     2581 gctttcattt tattttgcta aggtttttct aatgaatttt taagtgtttg tgtagtaact
     2641 aagtcatgtt tcttatatcc aggtggtaaa agcattcata aaggattgtg aacatttgtt
     2701 tttttcaagt ttctacttaa ggacaaatag tttgagaact ctgaaattaa gcatgatact
     2761 tagatcacat agtttgtttt gcatttgcta taattttcaa aattattttt gaatcaagac
     2821 aaaagtttaa tgttggctta agtgcttaaa tgtatcatgc tgaccagaat cctgttcagt
     2881 tatttttata tgcattacaa aatttcccat ttttgcatta aataaacagg ggaaaaggtc
     2941 aagtgatact tagatgttgg cacacacaag gagttggcag gcaacagtat tgattttatg
     3001 aggaaaaagt gataaagtca gaaggtttta gaaacttcca gttaacagtc cagcttttca
     3061 gatttgatag tgtatttcca aaatgaaaat aagatattca gtaaccactg ctctgtgtga
     3121 ttacaaatag gatcatccat ttgcatagcc ttacaatagt gccattttat ttttagtgca
     3181 aaattcttgt ttaaaaaatg tagttttata cagctgatag accaacctat atccaaactt
     3241 ttataaaaga ttattaacta ttcttgtttt atcacacggg cataccccaa atgcttctac
     3301 tgattcattt tcagccatca aagagccaat gcctttttaa aataaatctt ctgtggtctt
     3361 gtttttaatg gctcaactgt ctaatgcaat tgagtagagg tttgcagtga gaaattatgg
     3421 tttaggcctt atcccccatg aagtattact attaacctat gttcagactg cttccctcca
     3481 ccaatgtgaa caactttttc tccccaaaca gtgttaaaag ccactttaca acacttgact
     3541 tcatatgatg tagattcatt gttgttacat acacatccaa gtaaatcaaa gttttgggtg
     3601 gaagtgttga gaagcgtgaa caacttcttg tttttgtttt acctagaaca ttaatttatc
     3661 cagaatggca gcttttgcag atggtcacta tccattttct aaatcagatt ttattatacg
     3721 aatccaaagt gtcctagctc tttgtcaaag gtggtctata gaaatagtga tgatgaactt
     3781 taagttgctg caatattaga gttgccattt tcaccttttt ttttgaaaga tgcattttgt
     3841 ttgcaggttt gtgaagttct tgcagactaa cattacagga acattttaaa taaattctca
     3901 ggcatgtttg caaatacggc acatgttgta tacatgttag gaaattttac ttttcttgat
     3961 ctttttaaag tatgcctaat gaaagacatt ccactattat aatacataat gctcagcttt
     4021 tcatagagaa atatttaatt gtattttatg tttatacagg tatttcacac agtactttgt
     4081 tcttcataac gcagccacta taacttgatg tcattgcact actttaaata tttttagtaa
     4141 taccatgaat ttaatttgct taagatttag tacatttcat aactcttgaa ctcttgacaa
     4201 attgcattgg gaaaagaagg cttcgttaat agttacttag tctccctcac cccataccta
     4261 cccccagcaa agcactatct gtcttcattt ggaatggttt tctgttttat gatgtgcttt
     4321 caaaagagtt caaaatttgt aactcagttc aacacaagtc tgttgagctt tcaaatgtat
     4381 ttgaagtaat attcaaatag gcatttaaaa ttatgaatta gatgttttaa aatttatgca
     4441 tagtaatttt gcactattag gaaattccct tcccctattc cctgtctgcc attctgaata
     4501 tgcttattaa aatatttttt taaacata
//
LOCUS       XM_032615060            4316 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X8, mRNA.
ACCESSION   XM_032615060
VERSION     XM_032615060.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4316
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             27..1646
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X6"
                     /protein_id="XP_032470951.1"
                     /db_xref="GeneID:116744931"
                     /translation="MNWLIQKSFLFRVQRTKPSVESSSPGGSATSDDHEFDPSADMLV
                     HDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEE
                     EEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEI
                     IRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKD
                     EAERREVTCWGHTVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSH
                     IKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDF
                     HLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLD
                     ESESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEG
                     LHVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRV
                     NSNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    609..800
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    969..1103
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(969..971,1059..1064,1068..1073,1077..1085,
                     1089..1097)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1131..>1571
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 catctcaaag tgaaaagtgt ttgaatatga actggcttat acaaaagtca tttctatttc
       61 gagtccaaag gactaagcca tctgttgagt cttcaagtcc aggaggttca gcaacatcag
      121 atgaccatga atttgatcca tcagctgaca tgctggttca tgattttgat gatgaacgca
      181 cattagaaga ggaagaaatg atggaaggag aaacaaactt cagttctgaa atagaggatc
      241 ttgcaaggga aggcgacatg ccaattcatg aacttctcag cctttatggt tatgatagta
      301 ctattcgact acctgaggaa gatgaggagg aggaggagga ggaagaaggt gaagatgatg
      361 aagatgctga taatgatgat aacagtggct gtagtgggga aaataaagaa gagaatataa
      421 aagattcctc aggtcaagag gatgaaactc agtcttccaa tgatgatcca tcacaatctg
      481 ttgcttctca agatgcccag gaaataatcc gtccacgtcg atgtaaatat tttgatacaa
      541 atagtgaaat agaagaagaa tctgaagaag atgaagatta tataccatca gaagactgga
      601 aaaaggagat tatggtgggc tccatgtttc aagcagagat tccagttggc atctgtagat
      661 acaaagaaaa tgaaaaagat gaggcagaaa gaagggaagt aacttgctgg ggtcatacag
      721 tatatgaaaa tgatgatcag ctcctgtggg accctgagta cttaccggaa gacaaagtga
      781 ttgtatttct taaggatgca tctagaagaa caggtgatga gaaaggtgta gaagcaattc
      841 ctgaaggatc tcacataaaa gacaatgaac aggcattata tgaattagtt aaatgcaatt
      901 ttgatacaga agaagcatta agaagattaa gatttaatgt aaaagcagct agagaggaat
      961 tatctgtttg gacagaggaa gagtgtagaa attttgaaca agggttgaag gcctatggaa
     1021 aggactttca tttgattcag gctaataaag ttcgaacaag gtcagttggt gaatgtgtag
     1081 cattctatta tatgtggaaa aaatctgaac gttacgattt ctttgctcag caaacgcgat
     1141 ttggaaaaaa gaaatataat cttcatcctg gtgtcacgga ttacatggat cgtcttctag
     1201 atgaaagtga aagtgctgct tctagtcgag caccatcccc tcccccaact gcctcaaaca
     1261 gtagtaacag ccagtctgag aaagaagatg gcactataag caatagtaat caaaatgggg
     1321 tgtcatctaa cggaccaggt gaaacattaa acaaagaaga agtgaaagtt gaagggttac
     1381 atgttaatgg accaacaggt ggaagtaaga aaccacttca cacagatatg gatactaatg
     1441 gttatgaaac agataacctt accactgacc caaaaattgc ccatacggct gcaagaaatg
     1501 aaagtgattt tgatgaaaaa agtgagagac ctgccaaaag gcgaagggtg aacagcaatg
     1561 gaaaagaaag tccgggttct tctgaatttt tccaagatgc agtctcacat ggaaaatttg
     1621 aagaacttga aaacacagat gactaaattt tagacttatt ttactttctt tggagtaaat
     1681 tctggtgtga ctaaagtttt cagggttgat gggtgacctt aaaaagttga cttccttgaa
     1741 gcagttggtt aaaaatttga attgtcctaa ctttagtaaa taagatttca taattctgcc
     1801 ttttgcagac tttttacttt aaaattgtga aggccctttt aaggatatat aacaaatagt
     1861 ttagtaaatt tgaaagatat atctgtacct tctcatttga tgtattaatc ctaaaatttc
     1921 actacaaggt actttttgct tagtttgatg gcagagaaga aaaaaacaag ttcaaatttc
     1981 tgattaacac caatttttct gagtttcttg aaatgtcttt tatgacattt ttcttctcca
     2041 tacaaattga gttatcatta ttaaggaaac ccttatgaat cctgaaagtt atgctagcat
     2101 gattttttta tatatagaag tttaaaaata aaccaagtca ggtttgtata tgtaaaattg
     2161 ttgacatcaa tgatgtcttt ccatattctt atctgggctt aagaaataca ttctgtattt
     2221 ttccagattc tttgtagcct ttggaagatt tttacagtac atatgtcttg actgagctgt
     2281 cctttcttaa tacaaaagct tgtataattt tcttaacttg tacagttggt aaacttttat
     2341 gagaggaatt gatattctga gtctgtcagc tttcatttta ttttgctaag gtttttctaa
     2401 tgaattttta agtgtttgtg tagtaactaa gtcatgtttc ttatatccag gtggtaaaag
     2461 cattcataaa ggattgtgaa catttgtttt tttcaagttt ctacttaagg acaaatagtt
     2521 tgagaactct gaaattaagc atgatactta gatcacatag tttgttttgc atttgctata
     2581 attttcaaaa ttatttttga atcaagacaa aagtttaatg ttggcttaag tgcttaaatg
     2641 tatcatgctg accagaatcc tgttcagtta tttttatatg cattacaaaa tttcccattt
     2701 ttgcattaaa taaacagggg aaaaggtcaa gtgatactta gatgttggca cacacaagga
     2761 gttggcaggc aacagtattg attttatgag gaaaaagtga taaagtcaga aggttttaga
     2821 aacttccagt taacagtcca gcttttcaga tttgatagtg tatttccaaa atgaaaataa
     2881 gatattcagt aaccactgct ctgtgtgatt acaaatagga tcatccattt gcatagcctt
     2941 acaatagtgc cattttattt ttagtgcaaa attcttgttt aaaaaatgta gttttataca
     3001 gctgatagac caacctatat ccaaactttt ataaaagatt attaactatt cttgttttat
     3061 cacacgggca taccccaaat gcttctactg attcattttc agccatcaaa gagccaatgc
     3121 ctttttaaaa taaatcttct gtggtcttgt ttttaatggc tcaactgtct aatgcaattg
     3181 agtagaggtt tgcagtgaga aattatggtt taggccttat cccccatgaa gtattactat
     3241 taacctatgt tcagactgct tccctccacc aatgtgaaca actttttctc cccaaacagt
     3301 gttaaaagcc actttacaac acttgacttc atatgatgta gattcattgt tgttacatac
     3361 acatccaagt aaatcaaagt tttgggtgga agtgttgaga agcgtgaaca acttcttgtt
     3421 tttgttttac ctagaacatt aatttatcca gaatggcagc ttttgcagat ggtcactatc
     3481 cattttctaa atcagatttt attatacgaa tccaaagtgt cctagctctt tgtcaaaggt
     3541 ggtctataga aatagtgatg atgaacttta agttgctgca atattagagt tgccattttc
     3601 accttttttt ttgaaagatg cattttgttt gcaggtttgt gaagttcttg cagactaaca
     3661 ttacaggaac attttaaata aattctcagg catgtttgca aatacggcac atgttgtata
     3721 catgttagga aattttactt ttcttgatct ttttaaagta tgcctaatga aagacattcc
     3781 actattataa tacataatgc tcagcttttc atagagaaat atttaattgt attttatgtt
     3841 tatacaggta tttcacacag tactttgttc ttcataacgc agccactata acttgatgtc
     3901 attgcactac tttaaatatt tttagtaata ccatgaattt aatttgctta agatttagta
     3961 catttcataa ctcttgaact cttgacaaat tgcattggga aaagaaggct tcgttaatag
     4021 ttacttagtc tccctcaccc catacctacc cccagcaaag cactatctgt cttcatttgg
     4081 aatggttttc tgttttatga tgtgctttca aaagagttca aaatttgtaa ctcagttcaa
     4141 cacaagtctg ttgagctttc aaatgtattt gaagtaatat tcaaataggc atttaaaatt
     4201 atgaattaga tgttttaaaa tttatgcata gtaattttgc actattagga aattcccttc
     4261 ccctattccc tgtctgccat tctgaatatg cttattaaaa tattttttta aacata
//
LOCUS       XM_032615071            4495 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X9, mRNA.
ACCESSION   XM_032615071
VERSION     XM_032615071.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4495
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4495
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             209..1825
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X7"
                     /protein_id="XP_032470962.1"
                     /db_xref="GeneID:116744931"
                     /translation="MLCLRTADGPIISRIWPSVESSSPGGSATSDDHEFDPSADMLVH
                     DFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEE
                     EEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEII
                     RPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKDE
                     AERREVTCWGHTVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHI
                     KDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFH
                     LIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDE
                     SESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGL
                     HVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVN
                     SNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    788..979
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1148..1282
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1148..1150,1238..1243,1247..1252,1256..1264,
                     1268..1276)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1310..>1750
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 agctctccat cgccatccac ccccttcccg gactggtctt tgctttggtg gtggtggcgg
       61 cggcggcgct agtcttcccc ggcgtccgcg gcgcgctggg agtcagctgc ggaatggtgt
      121 ggtggctcga ttctcccagt gcctggctga gtttcggacg tggttaagaa ccaactggtt
      181 gaggttcaat gcagacaaga cggatgtgat gctgtgtttg agaactgctg atgggccaat
      241 aatttccaga atttggccat ctgttgagtc ttcaagtcca ggaggttcag caacatcaga
      301 tgaccatgaa tttgatccat cagctgacat gctggttcat gattttgatg atgaacgcac
      361 attagaagag gaagaaatga tggaaggaga aacaaacttc agttctgaaa tagaggatct
      421 tgcaagggaa ggcgacatgc caattcatga acttctcagc ctttatggtt atgatagtac
      481 tattcgacta cctgaggaag atgaggagga ggaggaggag gaagaaggtg aagatgatga
      541 agatgctgat aatgatgata acagtggctg tagtggggaa aataaagaag agaatataaa
      601 agattcctca ggtcaagagg atgaaactca gtcttccaat gatgatccat cacaatctgt
      661 tgcttctcaa gatgcccagg aaataatccg tccacgtcga tgtaaatatt ttgatacaaa
      721 tagtgaaata gaagaagaat ctgaagaaga tgaagattat ataccatcag aagactggaa
      781 aaaggagatt atggtgggct ccatgtttca agcagagatt ccagttggca tctgtagata
      841 caaagaaaat gaaaaagatg aggcagaaag aagggaagta acttgctggg gtcatacagt
      901 atatgaaaat gatgatcagc tcctgtggga ccctgagtac ttaccggaag acaaagtgat
      961 tgtatttctt aaggatgcat ctagaagaac aggtgatgag aaaggtgtag aagcaattcc
     1021 tgaaggatct cacataaaag acaatgaaca ggcattatat gaattagtta aatgcaattt
     1081 tgatacagaa gaagcattaa gaagattaag atttaatgta aaagcagcta gagaggaatt
     1141 atctgtttgg acagaggaag agtgtagaaa ttttgaacaa gggttgaagg cctatggaaa
     1201 ggactttcat ttgattcagg ctaataaagt tcgaacaagg tcagttggtg aatgtgtagc
     1261 attctattat atgtggaaaa aatctgaacg ttacgatttc tttgctcagc aaacgcgatt
     1321 tggaaaaaag aaatataatc ttcatcctgg tgtcacggat tacatggatc gtcttctaga
     1381 tgaaagtgaa agtgctgctt ctagtcgagc accatcccct cccccaactg cctcaaacag
     1441 tagtaacagc cagtctgaga aagaagatgg cactataagc aatagtaatc aaaatggggt
     1501 gtcatctaac ggaccaggtg aaacattaaa caaagaagaa gtgaaagttg aagggttaca
     1561 tgttaatgga ccaacaggtg gaagtaagaa accacttcac acagatatgg atactaatgg
     1621 ttatgaaaca gataacctta ccactgaccc aaaaattgcc catacggctg caagaaatga
     1681 aagtgatttt gatgaaaaaa gtgagagacc tgccaaaagg cgaagggtga acagcaatgg
     1741 aaaagaaagt ccgggttctt ctgaattttt ccaagatgca gtctcacatg gaaaatttga
     1801 agaacttgaa aacacagatg actaaatttt agacttattt tactttcttt ggagtaaatt
     1861 ctggtgtgac taaagttttc agggttgatg ggtgacctta aaaagttgac ttccttgaag
     1921 cagttggtta aaaatttgaa ttgtcctaac tttagtaaat aagatttcat aattctgcct
     1981 tttgcagact ttttacttta aaattgtgaa ggccctttta aggatatata acaaatagtt
     2041 tagtaaattt gaaagatata tctgtacctt ctcatttgat gtattaatcc taaaatttca
     2101 ctacaaggta ctttttgctt agtttgatgg cagagaagaa aaaaacaagt tcaaatttct
     2161 gattaacacc aatttttctg agtttcttga aatgtctttt atgacatttt tcttctccat
     2221 acaaattgag ttatcattat taaggaaacc cttatgaatc ctgaaagtta tgctagcatg
     2281 atttttttat atatagaagt ttaaaaataa accaagtcag gtttgtatat gtaaaattgt
     2341 tgacatcaat gatgtctttc catattctta tctgggctta agaaatacat tctgtatttt
     2401 tccagattct ttgtagcctt tggaagattt ttacagtaca tatgtcttga ctgagctgtc
     2461 ctttcttaat acaaaagctt gtataatttt cttaacttgt acagttggta aacttttatg
     2521 agaggaattg atattctgag tctgtcagct ttcattttat tttgctaagg tttttctaat
     2581 gaatttttaa gtgtttgtgt agtaactaag tcatgtttct tatatccagg tggtaaaagc
     2641 attcataaag gattgtgaac atttgttttt ttcaagtttc tacttaagga caaatagttt
     2701 gagaactctg aaattaagca tgatacttag atcacatagt ttgttttgca tttgctataa
     2761 ttttcaaaat tatttttgaa tcaagacaaa agtttaatgt tggcttaagt gcttaaatgt
     2821 atcatgctga ccagaatcct gttcagttat ttttatatgc attacaaaat ttcccatttt
     2881 tgcattaaat aaacagggga aaaggtcaag tgatacttag atgttggcac acacaaggag
     2941 ttggcaggca acagtattga ttttatgagg aaaaagtgat aaagtcagaa ggttttagaa
     3001 acttccagtt aacagtccag cttttcagat ttgatagtgt atttccaaaa tgaaaataag
     3061 atattcagta accactgctc tgtgtgatta caaataggat catccatttg catagcctta
     3121 caatagtgcc attttatttt tagtgcaaaa ttcttgttta aaaaatgtag ttttatacag
     3181 ctgatagacc aacctatatc caaactttta taaaagatta ttaactattc ttgttttatc
     3241 acacgggcat accccaaatg cttctactga ttcattttca gccatcaaag agccaatgcc
     3301 tttttaaaat aaatcttctg tggtcttgtt tttaatggct caactgtcta atgcaattga
     3361 gtagaggttt gcagtgagaa attatggttt aggccttatc ccccatgaag tattactatt
     3421 aacctatgtt cagactgctt ccctccacca atgtgaacaa ctttttctcc ccaaacagtg
     3481 ttaaaagcca ctttacaaca cttgacttca tatgatgtag attcattgtt gttacataca
     3541 catccaagta aatcaaagtt ttgggtggaa gtgttgagaa gcgtgaacaa cttcttgttt
     3601 ttgttttacc tagaacatta atttatccag aatggcagct tttgcagatg gtcactatcc
     3661 attttctaaa tcagatttta ttatacgaat ccaaagtgtc ctagctcttt gtcaaaggtg
     3721 gtctatagaa atagtgatga tgaactttaa gttgctgcaa tattagagtt gccattttca
     3781 cctttttttt tgaaagatgc attttgtttg caggtttgtg aagttcttgc agactaacat
     3841 tacaggaaca ttttaaataa attctcaggc atgtttgcaa atacggcaca tgttgtatac
     3901 atgttaggaa attttacttt tcttgatctt tttaaagtat gcctaatgaa agacattcca
     3961 ctattataat acataatgct cagcttttca tagagaaata tttaattgta ttttatgttt
     4021 atacaggtat ttcacacagt actttgttct tcataacgca gccactataa cttgatgtca
     4081 ttgcactact ttaaatattt ttagtaatac catgaattta atttgcttaa gatttagtac
     4141 atttcataac tcttgaactc ttgacaaatt gcattgggaa aagaaggctt cgttaatagt
     4201 tacttagtct ccctcacccc atacctaccc ccagcaaagc actatctgtc ttcatttgga
     4261 atggttttct gttttatgat gtgctttcaa aagagttcaa aatttgtaac tcagttcaac
     4321 acaagtctgt tgagctttca aatgtatttg aagtaatatt caaataggca tttaaaatta
     4381 tgaattagat gttttaaaat ttatgcatag taattttgca ctattaggaa attcccttcc
     4441 cctattccct gtctgccatt ctgaatatgc ttattaaaat atttttttaa acata
//
LOCUS       XM_032615080            4487 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X10, mRNA.
ACCESSION   XM_032615080
VERSION     XM_032615080.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4487
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4487
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             201..1817
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X7"
                     /protein_id="XP_032470971.1"
                     /db_xref="GeneID:116744931"
                     /translation="MLCLRTADGPIISRIWPSVESSSPGGSATSDDHEFDPSADMLVH
                     DFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEE
                     EEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEII
                     RPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKDE
                     AERREVTCWGHTVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHI
                     KDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFH
                     LIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDE
                     SESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGL
                     HVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVN
                     SNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    780..971
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1140..1274
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1140..1142,1230..1235,1239..1244,1248..1256,
                     1260..1268)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1302..>1742
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 tggggtcaag cagaccgccc cgctgtggct ccatctcttt cccgcagtat ctccgggttc
       61 tgtctcagac ctggaaggct cctgctccca ctgcagcccc ctgtgatggt gtggtggctc
      121 gattctccca gtgcctggct gagtttcgga cgtggttaag aaccaactgg ttgaggttca
      181 atgcagacaa gacggatgtg atgctgtgtt tgagaactgc tgatgggcca ataatttcca
      241 gaatttggcc atctgttgag tcttcaagtc caggaggttc agcaacatca gatgaccatg
      301 aatttgatcc atcagctgac atgctggttc atgattttga tgatgaacgc acattagaag
      361 aggaagaaat gatggaagga gaaacaaact tcagttctga aatagaggat cttgcaaggg
      421 aaggcgacat gccaattcat gaacttctca gcctttatgg ttatgatagt actattcgac
      481 tacctgagga agatgaggag gaggaggagg aggaagaagg tgaagatgat gaagatgctg
      541 ataatgatga taacagtggc tgtagtgggg aaaataaaga agagaatata aaagattcct
      601 caggtcaaga ggatgaaact cagtcttcca atgatgatcc atcacaatct gttgcttctc
      661 aagatgccca ggaaataatc cgtccacgtc gatgtaaata ttttgataca aatagtgaaa
      721 tagaagaaga atctgaagaa gatgaagatt atataccatc agaagactgg aaaaaggaga
      781 ttatggtggg ctccatgttt caagcagaga ttccagttgg catctgtaga tacaaagaaa
      841 atgaaaaaga tgaggcagaa agaagggaag taacttgctg gggtcataca gtatatgaaa
      901 atgatgatca gctcctgtgg gaccctgagt acttaccgga agacaaagtg attgtatttc
      961 ttaaggatgc atctagaaga acaggtgatg agaaaggtgt agaagcaatt cctgaaggat
     1021 ctcacataaa agacaatgaa caggcattat atgaattagt taaatgcaat tttgatacag
     1081 aagaagcatt aagaagatta agatttaatg taaaagcagc tagagaggaa ttatctgttt
     1141 ggacagagga agagtgtaga aattttgaac aagggttgaa ggcctatgga aaggactttc
     1201 atttgattca ggctaataaa gttcgaacaa ggtcagttgg tgaatgtgta gcattctatt
     1261 atatgtggaa aaaatctgaa cgttacgatt tctttgctca gcaaacgcga tttggaaaaa
     1321 agaaatataa tcttcatcct ggtgtcacgg attacatgga tcgtcttcta gatgaaagtg
     1381 aaagtgctgc ttctagtcga gcaccatccc ctcccccaac tgcctcaaac agtagtaaca
     1441 gccagtctga gaaagaagat ggcactataa gcaatagtaa tcaaaatggg gtgtcatcta
     1501 acggaccagg tgaaacatta aacaaagaag aagtgaaagt tgaagggtta catgttaatg
     1561 gaccaacagg tggaagtaag aaaccacttc acacagatat ggatactaat ggttatgaaa
     1621 cagataacct taccactgac ccaaaaattg cccatacggc tgcaagaaat gaaagtgatt
     1681 ttgatgaaaa aagtgagaga cctgccaaaa ggcgaagggt gaacagcaat ggaaaagaaa
     1741 gtccgggttc ttctgaattt ttccaagatg cagtctcaca tggaaaattt gaagaacttg
     1801 aaaacacaga tgactaaatt ttagacttat tttactttct ttggagtaaa ttctggtgtg
     1861 actaaagttt tcagggttga tgggtgacct taaaaagttg acttccttga agcagttggt
     1921 taaaaatttg aattgtccta actttagtaa ataagatttc ataattctgc cttttgcaga
     1981 ctttttactt taaaattgtg aaggcccttt taaggatata taacaaatag tttagtaaat
     2041 ttgaaagata tatctgtacc ttctcatttg atgtattaat cctaaaattt cactacaagg
     2101 tactttttgc ttagtttgat ggcagagaag aaaaaaacaa gttcaaattt ctgattaaca
     2161 ccaatttttc tgagtttctt gaaatgtctt ttatgacatt tttcttctcc atacaaattg
     2221 agttatcatt attaaggaaa cccttatgaa tcctgaaagt tatgctagca tgattttttt
     2281 atatatagaa gtttaaaaat aaaccaagtc aggtttgtat atgtaaaatt gttgacatca
     2341 atgatgtctt tccatattct tatctgggct taagaaatac attctgtatt tttccagatt
     2401 ctttgtagcc tttggaagat ttttacagta catatgtctt gactgagctg tcctttctta
     2461 atacaaaagc ttgtataatt ttcttaactt gtacagttgg taaactttta tgagaggaat
     2521 tgatattctg agtctgtcag ctttcatttt attttgctaa ggtttttcta atgaattttt
     2581 aagtgtttgt gtagtaacta agtcatgttt cttatatcca ggtggtaaaa gcattcataa
     2641 aggattgtga acatttgttt ttttcaagtt tctacttaag gacaaatagt ttgagaactc
     2701 tgaaattaag catgatactt agatcacata gtttgttttg catttgctat aattttcaaa
     2761 attatttttg aatcaagaca aaagtttaat gttggcttaa gtgcttaaat gtatcatgct
     2821 gaccagaatc ctgttcagtt atttttatat gcattacaaa atttcccatt tttgcattaa
     2881 ataaacaggg gaaaaggtca agtgatactt agatgttggc acacacaagg agttggcagg
     2941 caacagtatt gattttatga ggaaaaagtg ataaagtcag aaggttttag aaacttccag
     3001 ttaacagtcc agcttttcag atttgatagt gtatttccaa aatgaaaata agatattcag
     3061 taaccactgc tctgtgtgat tacaaatagg atcatccatt tgcatagcct tacaatagtg
     3121 ccattttatt tttagtgcaa aattcttgtt taaaaaatgt agttttatac agctgataga
     3181 ccaacctata tccaaacttt tataaaagat tattaactat tcttgtttta tcacacgggc
     3241 ataccccaaa tgcttctact gattcatttt cagccatcaa agagccaatg cctttttaaa
     3301 ataaatcttc tgtggtcttg tttttaatgg ctcaactgtc taatgcaatt gagtagaggt
     3361 ttgcagtgag aaattatggt ttaggcctta tcccccatga agtattacta ttaacctatg
     3421 ttcagactgc ttccctccac caatgtgaac aactttttct ccccaaacag tgttaaaagc
     3481 cactttacaa cacttgactt catatgatgt agattcattg ttgttacata cacatccaag
     3541 taaatcaaag ttttgggtgg aagtgttgag aagcgtgaac aacttcttgt ttttgtttta
     3601 cctagaacat taatttatcc agaatggcag cttttgcaga tggtcactat ccattttcta
     3661 aatcagattt tattatacga atccaaagtg tcctagctct ttgtcaaagg tggtctatag
     3721 aaatagtgat gatgaacttt aagttgctgc aatattagag ttgccatttt cacctttttt
     3781 tttgaaagat gcattttgtt tgcaggtttg tgaagttctt gcagactaac attacaggaa
     3841 cattttaaat aaattctcag gcatgtttgc aaatacggca catgttgtat acatgttagg
     3901 aaattttact tttcttgatc tttttaaagt atgcctaatg aaagacattc cactattata
     3961 atacataatg ctcagctttt catagagaaa tatttaattg tattttatgt ttatacaggt
     4021 atttcacaca gtactttgtt cttcataacg cagccactat aacttgatgt cattgcacta
     4081 ctttaaatat ttttagtaat accatgaatt taatttgctt aagatttagt acatttcata
     4141 actcttgaac tcttgacaaa ttgcattggg aaaagaaggc ttcgttaata gttacttagt
     4201 ctccctcacc ccatacctac ccccagcaaa gcactatctg tcttcatttg gaatggtttt
     4261 ctgttttatg atgtgctttc aaaagagttc aaaatttgta actcagttca acacaagtct
     4321 gttgagcttt caaatgtatt tgaagtaata ttcaaatagg catttaaaat tatgaattag
     4381 atgttttaaa atttatgcat agtaattttg cactattagg aaattccctt cccctattcc
     4441 ctgtctgcca ttctgaatat gcttattaaa atattttttt aaacata
//
LOCUS       XM_032615086            4603 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X11, mRNA.
ACCESSION   XM_032615086
VERSION     XM_032615086.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4603
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4603
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 17 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             347..1933
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X8"
                     /protein_id="XP_032470977.1"
                     /db_xref="GeneID:116744931"
                     /translation="MFMFNWFTDCLWTLFLSYYQPSVESSSPGGSATSDDHEFDPSAD
                     MLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEED
                     EEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDA
                     QEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKEN
                     EKVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYEL
                     VKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTR
                     SVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAP
                     SPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGLHVNGPTGGSK
                     KPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVNSNGKESPGSS
                     EFFQDAVSHGKFEELENTDD"
     misc_feature    938..1087
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1256..1390
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1256..1258,1346..1351,1355..1360,1364..1372,
                     1376..1384)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1418..>1858
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 gactagaaca aggaggcggg cggcccgggc cctaggcccc tcccaggctc tgagtctccc
       61 gggctgcagg cggatggatg gggcttcttc aggcggcggc ggcagcagcg gaggtggcgg
      121 cggcagcggc ggcagcggct atggtgtggt ggctcgattc tcccagtgcc tggctgagtt
      181 tcggacgtgg ttaagaacca actggttgag gttcaatgca gacaagacgg atgtgatgct
      241 gatgtttcca tcaagcatct caaagtgaaa agtgtttgaa tatgaactgg cttatacaaa
      301 agtcatttct atttcgagtc caaaggacta agaaaatgtg catcagatgt ttatgtttaa
      361 ttggtttaca gactgtctgt ggactctttt cctgtcatat taccagccat ctgttgagtc
      421 ttcaagtcca ggaggttcag caacatcaga tgaccatgaa tttgatccat cagctgacat
      481 gctggttcat gattttgatg atgaacgcac attagaagag gaagaaatga tggaaggaga
      541 aacaaacttc agttctgaaa tagaggatct tgcaagggaa ggcgacatgc caattcatga
      601 acttctcagc ctttatggtt atgatagtac tattcgacta cctgaggaag atgaggagga
      661 ggaggaggag gaagaaggtg aagatgatga agatgctgat aatgatgata acagtggctg
      721 tagtggggaa aataaagaag agaatataaa agattcctca ggtcaagagg atgaaactca
      781 gtcttccaat gatgatccat cacaatctgt tgcttctcaa gatgcccagg aaataatccg
      841 tccacgtcga tgtaaatatt ttgatacaaa tagtgaaata gaagaagaat ctgaagaaga
      901 tgaagattat ataccatcag aagactggaa aaaggagatt atggtgggct ccatgtttca
      961 agcagagatt ccagttggca tctgtagata caaagaaaat gaaaaagtat atgaaaatga
     1021 tgatcagctc ctgtgggacc ctgagtactt accggaagac aaagtgattg tatttcttaa
     1081 ggatgcatct agaagaacag gtgatgagaa aggtgtagaa gcaattcctg aaggatctca
     1141 cataaaagac aatgaacagg cattatatga attagttaaa tgcaattttg atacagaaga
     1201 agcattaaga agattaagat ttaatgtaaa agcagctaga gaggaattat ctgtttggac
     1261 agaggaagag tgtagaaatt ttgaacaagg gttgaaggcc tatggaaagg actttcattt
     1321 gattcaggct aataaagttc gaacaaggtc agttggtgaa tgtgtagcat tctattatat
     1381 gtggaaaaaa tctgaacgtt acgatttctt tgctcagcaa acgcgatttg gaaaaaagaa
     1441 atataatctt catcctggtg tcacggatta catggatcgt cttctagatg aaagtgaaag
     1501 tgctgcttct agtcgagcac catcccctcc cccaactgcc tcaaacagta gtaacagcca
     1561 gtctgagaaa gaagatggca ctataagcaa tagtaatcaa aatggggtgt catctaacgg
     1621 accaggtgaa acattaaaca aagaagaagt gaaagttgaa gggttacatg ttaatggacc
     1681 aacaggtgga agtaagaaac cacttcacac agatatggat actaatggtt atgaaacaga
     1741 taaccttacc actgacccaa aaattgccca tacggctgca agaaatgaaa gtgattttga
     1801 tgaaaaaagt gagagacctg ccaaaaggcg aagggtgaac agcaatggaa aagaaagtcc
     1861 gggttcttct gaatttttcc aagatgcagt ctcacatgga aaatttgaag aacttgaaaa
     1921 cacagatgac taaattttag acttatttta ctttctttgg agtaaattct ggtgtgacta
     1981 aagttttcag ggttgatggg tgaccttaaa aagttgactt ccttgaagca gttggttaaa
     2041 aatttgaatt gtcctaactt tagtaaataa gatttcataa ttctgccttt tgcagacttt
     2101 ttactttaaa attgtgaagg cccttttaag gatatataac aaatagttta gtaaatttga
     2161 aagatatatc tgtaccttct catttgatgt attaatccta aaatttcact acaaggtact
     2221 ttttgcttag tttgatggca gagaagaaaa aaacaagttc aaatttctga ttaacaccaa
     2281 tttttctgag tttcttgaaa tgtcttttat gacatttttc ttctccatac aaattgagtt
     2341 atcattatta aggaaaccct tatgaatcct gaaagttatg ctagcatgat ttttttatat
     2401 atagaagttt aaaaataaac caagtcaggt ttgtatatgt aaaattgttg acatcaatga
     2461 tgtctttcca tattcttatc tgggcttaag aaatacattc tgtatttttc cagattcttt
     2521 gtagcctttg gaagattttt acagtacata tgtcttgact gagctgtcct ttcttaatac
     2581 aaaagcttgt ataattttct taacttgtac agttggtaaa cttttatgag aggaattgat
     2641 attctgagtc tgtcagcttt cattttattt tgctaaggtt tttctaatga atttttaagt
     2701 gtttgtgtag taactaagtc atgtttctta tatccaggtg gtaaaagcat tcataaagga
     2761 ttgtgaacat ttgttttttt caagtttcta cttaaggaca aatagtttga gaactctgaa
     2821 attaagcatg atacttagat cacatagttt gttttgcatt tgctataatt ttcaaaatta
     2881 tttttgaatc aagacaaaag tttaatgttg gcttaagtgc ttaaatgtat catgctgacc
     2941 agaatcctgt tcagttattt ttatatgcat tacaaaattt cccatttttg cattaaataa
     3001 acaggggaaa aggtcaagtg atacttagat gttggcacac acaaggagtt ggcaggcaac
     3061 agtattgatt ttatgaggaa aaagtgataa agtcagaagg ttttagaaac ttccagttaa
     3121 cagtccagct tttcagattt gatagtgtat ttccaaaatg aaaataagat attcagtaac
     3181 cactgctctg tgtgattaca aataggatca tccatttgca tagccttaca atagtgccat
     3241 tttattttta gtgcaaaatt cttgtttaaa aaatgtagtt ttatacagct gatagaccaa
     3301 cctatatcca aacttttata aaagattatt aactattctt gttttatcac acgggcatac
     3361 cccaaatgct tctactgatt cattttcagc catcaaagag ccaatgcctt tttaaaataa
     3421 atcttctgtg gtcttgtttt taatggctca actgtctaat gcaattgagt agaggtttgc
     3481 agtgagaaat tatggtttag gccttatccc ccatgaagta ttactattaa cctatgttca
     3541 gactgcttcc ctccaccaat gtgaacaact ttttctcccc aaacagtgtt aaaagccact
     3601 ttacaacact tgacttcata tgatgtagat tcattgttgt tacatacaca tccaagtaaa
     3661 tcaaagtttt gggtggaagt gttgagaagc gtgaacaact tcttgttttt gttttaccta
     3721 gaacattaat ttatccagaa tggcagcttt tgcagatggt cactatccat tttctaaatc
     3781 agattttatt atacgaatcc aaagtgtcct agctctttgt caaaggtggt ctatagaaat
     3841 agtgatgatg aactttaagt tgctgcaata ttagagttgc cattttcacc tttttttttg
     3901 aaagatgcat tttgtttgca ggtttgtgaa gttcttgcag actaacatta caggaacatt
     3961 ttaaataaat tctcaggcat gtttgcaaat acggcacatg ttgtatacat gttaggaaat
     4021 tttacttttc ttgatctttt taaagtatgc ctaatgaaag acattccact attataatac
     4081 ataatgctca gcttttcata gagaaatatt taattgtatt ttatgtttat acaggtattt
     4141 cacacagtac tttgttcttc ataacgcagc cactataact tgatgtcatt gcactacttt
     4201 aaatattttt agtaatacca tgaatttaat ttgcttaaga tttagtacat ttcataactc
     4261 ttgaactctt gacaaattgc attgggaaaa gaaggcttcg ttaatagtta cttagtctcc
     4321 ctcaccccat acctaccccc agcaaagcac tatctgtctt catttggaat ggttttctgt
     4381 tttatgatgt gctttcaaaa gagttcaaaa tttgtaactc agttcaacac aagtctgttg
     4441 agctttcaaa tgtatttgaa gtaatattca aataggcatt taaaattatg aattagatgt
     4501 tttaaaattt atgcatagta attttgcact attaggaaat tcccttcccc tattccctgt
     4561 ctgccattct gaatatgctt attaaaatat ttttttaaac ata
//
LOCUS       XM_032615095            4515 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X12, mRNA.
ACCESSION   XM_032615095
VERSION     XM_032615095.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4515
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4515
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 17 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             259..1845
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X8"
                     /protein_id="XP_032470986.1"
                     /db_xref="GeneID:116744931"
                     /translation="MFMFNWFTDCLWTLFLSYYQPSVESSSPGGSATSDDHEFDPSAD
                     MLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEED
                     EEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDA
                     QEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKEN
                     EKVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYEL
                     VKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTR
                     SVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAP
                     SPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGLHVNGPTGGSK
                     KPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVNSNGKESPGSS
                     EFFQDAVSHGKFEELENTDD"
     misc_feature    850..999
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1168..1302
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1168..1170,1258..1263,1267..1272,1276..1284,
                     1288..1296)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1330..>1770
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 gactagaaca aggaggcggg cggcccgggc cctaggcccc tcccaggctc tgagtctccc
       61 gggctgcagg cggatggatg gggcttcttc aggcggcggc ggcagcagcg gaggtggcgg
      121 cggcagcggc ggcagcggct atggtgtggt ggctcgattc tcccagtgcc tggctgagtt
      181 tcggacgtgg ttaagaacca actggttgag gttcaatgca gacaagacgg atgtgatgct
      241 gtagaaaatg tgcatcagat gtttatgttt aattggttta cagactgtct gtggactctt
      301 ttcctgtcat attaccagcc atctgttgag tcttcaagtc caggaggttc agcaacatca
      361 gatgaccatg aatttgatcc atcagctgac atgctggttc atgattttga tgatgaacgc
      421 acattagaag aggaagaaat gatggaagga gaaacaaact tcagttctga aatagaggat
      481 cttgcaaggg aaggcgacat gccaattcat gaacttctca gcctttatgg ttatgatagt
      541 actattcgac tacctgagga agatgaggag gaggaggagg aggaagaagg tgaagatgat
      601 gaagatgctg ataatgatga taacagtggc tgtagtgggg aaaataaaga agagaatata
      661 aaagattcct caggtcaaga ggatgaaact cagtcttcca atgatgatcc atcacaatct
      721 gttgcttctc aagatgccca ggaaataatc cgtccacgtc gatgtaaata ttttgataca
      781 aatagtgaaa tagaagaaga atctgaagaa gatgaagatt atataccatc agaagactgg
      841 aaaaaggaga ttatggtggg ctccatgttt caagcagaga ttccagttgg catctgtaga
      901 tacaaagaaa atgaaaaagt atatgaaaat gatgatcagc tcctgtggga ccctgagtac
      961 ttaccggaag acaaagtgat tgtatttctt aaggatgcat ctagaagaac aggtgatgag
     1021 aaaggtgtag aagcaattcc tgaaggatct cacataaaag acaatgaaca ggcattatat
     1081 gaattagtta aatgcaattt tgatacagaa gaagcattaa gaagattaag atttaatgta
     1141 aaagcagcta gagaggaatt atctgtttgg acagaggaag agtgtagaaa ttttgaacaa
     1201 gggttgaagg cctatggaaa ggactttcat ttgattcagg ctaataaagt tcgaacaagg
     1261 tcagttggtg aatgtgtagc attctattat atgtggaaaa aatctgaacg ttacgatttc
     1321 tttgctcagc aaacgcgatt tggaaaaaag aaatataatc ttcatcctgg tgtcacggat
     1381 tacatggatc gtcttctaga tgaaagtgaa agtgctgctt ctagtcgagc accatcccct
     1441 cccccaactg cctcaaacag tagtaacagc cagtctgaga aagaagatgg cactataagc
     1501 aatagtaatc aaaatggggt gtcatctaac ggaccaggtg aaacattaaa caaagaagaa
     1561 gtgaaagttg aagggttaca tgttaatgga ccaacaggtg gaagtaagaa accacttcac
     1621 acagatatgg atactaatgg ttatgaaaca gataacctta ccactgaccc aaaaattgcc
     1681 catacggctg caagaaatga aagtgatttt gatgaaaaaa gtgagagacc tgccaaaagg
     1741 cgaagggtga acagcaatgg aaaagaaagt ccgggttctt ctgaattttt ccaagatgca
     1801 gtctcacatg gaaaatttga agaacttgaa aacacagatg actaaatttt agacttattt
     1861 tactttcttt ggagtaaatt ctggtgtgac taaagttttc agggttgatg ggtgacctta
     1921 aaaagttgac ttccttgaag cagttggtta aaaatttgaa ttgtcctaac tttagtaaat
     1981 aagatttcat aattctgcct tttgcagact ttttacttta aaattgtgaa ggccctttta
     2041 aggatatata acaaatagtt tagtaaattt gaaagatata tctgtacctt ctcatttgat
     2101 gtattaatcc taaaatttca ctacaaggta ctttttgctt agtttgatgg cagagaagaa
     2161 aaaaacaagt tcaaatttct gattaacacc aatttttctg agtttcttga aatgtctttt
     2221 atgacatttt tcttctccat acaaattgag ttatcattat taaggaaacc cttatgaatc
     2281 ctgaaagtta tgctagcatg atttttttat atatagaagt ttaaaaataa accaagtcag
     2341 gtttgtatat gtaaaattgt tgacatcaat gatgtctttc catattctta tctgggctta
     2401 agaaatacat tctgtatttt tccagattct ttgtagcctt tggaagattt ttacagtaca
     2461 tatgtcttga ctgagctgtc ctttcttaat acaaaagctt gtataatttt cttaacttgt
     2521 acagttggta aacttttatg agaggaattg atattctgag tctgtcagct ttcattttat
     2581 tttgctaagg tttttctaat gaatttttaa gtgtttgtgt agtaactaag tcatgtttct
     2641 tatatccagg tggtaaaagc attcataaag gattgtgaac atttgttttt ttcaagtttc
     2701 tacttaagga caaatagttt gagaactctg aaattaagca tgatacttag atcacatagt
     2761 ttgttttgca tttgctataa ttttcaaaat tatttttgaa tcaagacaaa agtttaatgt
     2821 tggcttaagt gcttaaatgt atcatgctga ccagaatcct gttcagttat ttttatatgc
     2881 attacaaaat ttcccatttt tgcattaaat aaacagggga aaaggtcaag tgatacttag
     2941 atgttggcac acacaaggag ttggcaggca acagtattga ttttatgagg aaaaagtgat
     3001 aaagtcagaa ggttttagaa acttccagtt aacagtccag cttttcagat ttgatagtgt
     3061 atttccaaaa tgaaaataag atattcagta accactgctc tgtgtgatta caaataggat
     3121 catccatttg catagcctta caatagtgcc attttatttt tagtgcaaaa ttcttgttta
     3181 aaaaatgtag ttttatacag ctgatagacc aacctatatc caaactttta taaaagatta
     3241 ttaactattc ttgttttatc acacgggcat accccaaatg cttctactga ttcattttca
     3301 gccatcaaag agccaatgcc tttttaaaat aaatcttctg tggtcttgtt tttaatggct
     3361 caactgtcta atgcaattga gtagaggttt gcagtgagaa attatggttt aggccttatc
     3421 ccccatgaag tattactatt aacctatgtt cagactgctt ccctccacca atgtgaacaa
     3481 ctttttctcc ccaaacagtg ttaaaagcca ctttacaaca cttgacttca tatgatgtag
     3541 attcattgtt gttacataca catccaagta aatcaaagtt ttgggtggaa gtgttgagaa
     3601 gcgtgaacaa cttcttgttt ttgttttacc tagaacatta atttatccag aatggcagct
     3661 tttgcagatg gtcactatcc attttctaaa tcagatttta ttatacgaat ccaaagtgtc
     3721 ctagctcttt gtcaaaggtg gtctatagaa atagtgatga tgaactttaa gttgctgcaa
     3781 tattagagtt gccattttca cctttttttt tgaaagatgc attttgtttg caggtttgtg
     3841 aagttcttgc agactaacat tacaggaaca ttttaaataa attctcaggc atgtttgcaa
     3901 atacggcaca tgttgtatac atgttaggaa attttacttt tcttgatctt tttaaagtat
     3961 gcctaatgaa agacattcca ctattataat acataatgct cagcttttca tagagaaata
     4021 tttaattgta ttttatgttt atacaggtat ttcacacagt actttgttct tcataacgca
     4081 gccactataa cttgatgtca ttgcactact ttaaatattt ttagtaatac catgaattta
     4141 atttgcttaa gatttagtac atttcataac tcttgaactc ttgacaaatt gcattgggaa
     4201 aagaaggctt cgttaatagt tacttagtct ccctcacccc atacctaccc ccagcaaagc
     4261 actatctgtc ttcatttgga atggttttct gttttatgat gtgctttcaa aagagttcaa
     4321 aatttgtaac tcagttcaac acaagtctgt tgagctttca aatgtatttg aagtaatatt
     4381 caaataggca tttaaaatta tgaattagat gttttaaaat ttatgcatag taattttgca
     4441 ctattaggaa attcccttcc cctattccct gtctgccatt ctgaatatgc ttattaaaat
     4501 atttttttaa acata
//
LOCUS       XM_032615105            4468 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X13, mRNA.
ACCESSION   XM_032615105
VERSION     XM_032615105.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4468
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4468
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             221..1798
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X9"
                     /protein_id="XP_032470996.1"
                     /db_xref="GeneID:116744931"
                     /translation="MAEPSVESSSPGGSATSDDHEFDPSADMLVHDFDDERTLEEEEM
                     MEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEEEEEEGEDDEDADN
                     DDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSE
                     IEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKDEAERREVTCWGHTV
                     YENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKC
                     NFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVG
                     ECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPP
                     PTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGLHVNGPTGGSKKPL
                     HTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVNSNGKESPGSSEFF
                     QDAVSHGKFEELENTDD"
     misc_feature    761..952
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1121..1255
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1121..1123,1211..1216,1220..1225,1229..1237,
                     1241..1249)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1283..>1723
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 ccctctagtc cagctcagcc cgggcgccgc gagggggcgg agtggggtgt ggtgggcgcg
       61 ctcgggcggc tcctgcgcgt tcccgccgag gcagcggcgg cgggagcggc agagacggtg
      121 gcggcggcgg ctggagtccc gttgccgagt cttacatccg ggttctggcc gtgacccagc
      181 tgcggccgcc gcggagatgt gacccgtcag tacggcaaat atggcggagc catctgttga
      241 gtcttcaagt ccaggaggtt cagcaacatc agatgaccat gaatttgatc catcagctga
      301 catgctggtt catgattttg atgatgaacg cacattagaa gaggaagaaa tgatggaagg
      361 agaaacaaac ttcagttctg aaatagagga tcttgcaagg gaaggcgaca tgccaattca
      421 tgaacttctc agcctttatg gttatgatag tactattcga ctacctgagg aagatgagga
      481 ggaggaggag gaggaagaag gtgaagatga tgaagatgct gataatgatg ataacagtgg
      541 ctgtagtggg gaaaataaag aagagaatat aaaagattcc tcaggtcaag aggatgaaac
      601 tcagtcttcc aatgatgatc catcacaatc tgttgcttct caagatgccc aggaaataat
      661 ccgtccacgt cgatgtaaat attttgatac aaatagtgaa atagaagaag aatctgaaga
      721 agatgaagat tatataccat cagaagactg gaaaaaggag attatggtgg gctccatgtt
      781 tcaagcagag attccagttg gcatctgtag atacaaagaa aatgaaaaag atgaggcaga
      841 aagaagggaa gtaacttgct ggggtcatac agtatatgaa aatgatgatc agctcctgtg
      901 ggaccctgag tacttaccgg aagacaaagt gattgtattt cttaaggatg catctagaag
      961 aacaggtgat gagaaaggtg tagaagcaat tcctgaagga tctcacataa aagacaatga
     1021 acaggcatta tatgaattag ttaaatgcaa ttttgataca gaagaagcat taagaagatt
     1081 aagatttaat gtaaaagcag ctagagagga attatctgtt tggacagagg aagagtgtag
     1141 aaattttgaa caagggttga aggcctatgg aaaggacttt catttgattc aggctaataa
     1201 agttcgaaca aggtcagttg gtgaatgtgt agcattctat tatatgtgga aaaaatctga
     1261 acgttacgat ttctttgctc agcaaacgcg atttggaaaa aagaaatata atcttcatcc
     1321 tggtgtcacg gattacatgg atcgtcttct agatgaaagt gaaagtgctg cttctagtcg
     1381 agcaccatcc cctcccccaa ctgcctcaaa cagtagtaac agccagtctg agaaagaaga
     1441 tggcactata agcaatagta atcaaaatgg ggtgtcatct aacggaccag gtgaaacatt
     1501 aaacaaagaa gaagtgaaag ttgaagggtt acatgttaat ggaccaacag gtggaagtaa
     1561 gaaaccactt cacacagata tggatactaa tggttatgaa acagataacc ttaccactga
     1621 cccaaaaatt gcccatacgg ctgcaagaaa tgaaagtgat tttgatgaaa aaagtgagag
     1681 acctgccaaa aggcgaaggg tgaacagcaa tggaaaagaa agtccgggtt cttctgaatt
     1741 tttccaagat gcagtctcac atggaaaatt tgaagaactt gaaaacacag atgactaaat
     1801 tttagactta ttttactttc tttggagtaa attctggtgt gactaaagtt ttcagggttg
     1861 atgggtgacc ttaaaaagtt gacttccttg aagcagttgg ttaaaaattt gaattgtcct
     1921 aactttagta aataagattt cataattctg ccttttgcag actttttact ttaaaattgt
     1981 gaaggccctt ttaaggatat ataacaaata gtttagtaaa tttgaaagat atatctgtac
     2041 cttctcattt gatgtattaa tcctaaaatt tcactacaag gtactttttg cttagtttga
     2101 tggcagagaa gaaaaaaaca agttcaaatt tctgattaac accaattttt ctgagtttct
     2161 tgaaatgtct tttatgacat ttttcttctc catacaaatt gagttatcat tattaaggaa
     2221 acccttatga atcctgaaag ttatgctagc atgatttttt tatatataga agtttaaaaa
     2281 taaaccaagt caggtttgta tatgtaaaat tgttgacatc aatgatgtct ttccatattc
     2341 ttatctgggc ttaagaaata cattctgtat ttttccagat tctttgtagc ctttggaaga
     2401 tttttacagt acatatgtct tgactgagct gtcctttctt aatacaaaag cttgtataat
     2461 tttcttaact tgtacagttg gtaaactttt atgagaggaa ttgatattct gagtctgtca
     2521 gctttcattt tattttgcta aggtttttct aatgaatttt taagtgtttg tgtagtaact
     2581 aagtcatgtt tcttatatcc aggtggtaaa agcattcata aaggattgtg aacatttgtt
     2641 tttttcaagt ttctacttaa ggacaaatag tttgagaact ctgaaattaa gcatgatact
     2701 tagatcacat agtttgtttt gcatttgcta taattttcaa aattattttt gaatcaagac
     2761 aaaagtttaa tgttggctta agtgcttaaa tgtatcatgc tgaccagaat cctgttcagt
     2821 tatttttata tgcattacaa aatttcccat ttttgcatta aataaacagg ggaaaaggtc
     2881 aagtgatact tagatgttgg cacacacaag gagttggcag gcaacagtat tgattttatg
     2941 aggaaaaagt gataaagtca gaaggtttta gaaacttcca gttaacagtc cagcttttca
     3001 gatttgatag tgtatttcca aaatgaaaat aagatattca gtaaccactg ctctgtgtga
     3061 ttacaaatag gatcatccat ttgcatagcc ttacaatagt gccattttat ttttagtgca
     3121 aaattcttgt ttaaaaaatg tagttttata cagctgatag accaacctat atccaaactt
     3181 ttataaaaga ttattaacta ttcttgtttt atcacacggg cataccccaa atgcttctac
     3241 tgattcattt tcagccatca aagagccaat gcctttttaa aataaatctt ctgtggtctt
     3301 gtttttaatg gctcaactgt ctaatgcaat tgagtagagg tttgcagtga gaaattatgg
     3361 tttaggcctt atcccccatg aagtattact attaacctat gttcagactg cttccctcca
     3421 ccaatgtgaa caactttttc tccccaaaca gtgttaaaag ccactttaca acacttgact
     3481 tcatatgatg tagattcatt gttgttacat acacatccaa gtaaatcaaa gttttgggtg
     3541 gaagtgttga gaagcgtgaa caacttcttg tttttgtttt acctagaaca ttaatttatc
     3601 cagaatggca gcttttgcag atggtcacta tccattttct aaatcagatt ttattatacg
     3661 aatccaaagt gtcctagctc tttgtcaaag gtggtctata gaaatagtga tgatgaactt
     3721 taagttgctg caatattaga gttgccattt tcaccttttt ttttgaaaga tgcattttgt
     3781 ttgcaggttt gtgaagttct tgcagactaa cattacagga acattttaaa taaattctca
     3841 ggcatgtttg caaatacggc acatgttgta tacatgttag gaaattttac ttttcttgat
     3901 ctttttaaag tatgcctaat gaaagacatt ccactattat aatacataat gctcagcttt
     3961 tcatagagaa atatttaatt gtattttatg tttatacagg tatttcacac agtactttgt
     4021 tcttcataac gcagccacta taacttgatg tcattgcact actttaaata tttttagtaa
     4081 taccatgaat ttaatttgct taagatttag tacatttcat aactcttgaa ctcttgacaa
     4141 attgcattgg gaaaagaagg cttcgttaat agttacttag tctccctcac cccataccta
     4201 cccccagcaa agcactatct gtcttcattt ggaatggttt tctgttttat gatgtgcttt
     4261 caaaagagtt caaaatttgt aactcagttc aacacaagtc tgttgagctt tcaaatgtat
     4321 ttgaagtaat attcaaatag gcatttaaaa ttatgaatta gatgttttaa aatttatgca
     4381 tagtaatttt gcactattag gaaattccct tcccctattc cctgtctgcc attctgaata
     4441 tgcttattaa aatatttttt taaacata
//
LOCUS       XM_032615113            4453 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X14, mRNA.
ACCESSION   XM_032615113
VERSION     XM_032615113.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4453
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4453
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             209..1783
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X10"
                     /protein_id="XP_032471004.1"
                     /db_xref="GeneID:116744931"
                     /translation="MLPSVESSSPGGSATSDDHEFDPSADMLVHDFDDERTLEEEEMM
                     EGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEEEEEEGEDDEDADND
                     DNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEI
                     EEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKDEAERREVTCWGHTVY
                     ENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCN
                     FDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGE
                     CVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPP
                     TASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVKVEGLHVNGPTGGSKKPLH
                     TDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKRRRVNSNGKESPGSSEFFQ
                     DAVSHGKFEELENTDD"
     misc_feature    746..937
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1106..1240
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1106..1108,1196..1201,1205..1210,1214..1222,
                     1226..1234)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1268..>1708
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 agctctccat cgccatccac ccccttcccg gactggtctt tgctttggtg gtggtggcgg
       61 cggcggcgct agtcttcccc ggcgtccgcg gcgcgctggg agtcagctgc ggaatggtgt
      121 ggtggctcga ttctcccagt gcctggctga gtttcggacg tggttaagaa ccaactggtt
      181 gaggttcaat gcagacaaga cggatgtgat gctgccatct gttgagtctt caagtccagg
      241 aggttcagca acatcagatg accatgaatt tgatccatca gctgacatgc tggttcatga
      301 ttttgatgat gaacgcacat tagaagagga agaaatgatg gaaggagaaa caaacttcag
      361 ttctgaaata gaggatcttg caagggaagg cgacatgcca attcatgaac ttctcagcct
      421 ttatggttat gatagtacta ttcgactacc tgaggaagat gaggaggagg aggaggagga
      481 agaaggtgaa gatgatgaag atgctgataa tgatgataac agtggctgta gtggggaaaa
      541 taaagaagag aatataaaag attcctcagg tcaagaggat gaaactcagt cttccaatga
      601 tgatccatca caatctgttg cttctcaaga tgcccaggaa ataatccgtc cacgtcgatg
      661 taaatatttt gatacaaata gtgaaataga agaagaatct gaagaagatg aagattatat
      721 accatcagaa gactggaaaa aggagattat ggtgggctcc atgtttcaag cagagattcc
      781 agttggcatc tgtagataca aagaaaatga aaaagatgag gcagaaagaa gggaagtaac
      841 ttgctggggt catacagtat atgaaaatga tgatcagctc ctgtgggacc ctgagtactt
      901 accggaagac aaagtgattg tatttcttaa ggatgcatct agaagaacag gtgatgagaa
      961 aggtgtagaa gcaattcctg aaggatctca cataaaagac aatgaacagg cattatatga
     1021 attagttaaa tgcaattttg atacagaaga agcattaaga agattaagat ttaatgtaaa
     1081 agcagctaga gaggaattat ctgtttggac agaggaagag tgtagaaatt ttgaacaagg
     1141 gttgaaggcc tatggaaagg actttcattt gattcaggct aataaagttc gaacaaggtc
     1201 agttggtgaa tgtgtagcat tctattatat gtggaaaaaa tctgaacgtt acgatttctt
     1261 tgctcagcaa acgcgatttg gaaaaaagaa atataatctt catcctggtg tcacggatta
     1321 catggatcgt cttctagatg aaagtgaaag tgctgcttct agtcgagcac catcccctcc
     1381 cccaactgcc tcaaacagta gtaacagcca gtctgagaaa gaagatggca ctataagcaa
     1441 tagtaatcaa aatggggtgt catctaacgg accaggtgaa acattaaaca aagaagaagt
     1501 gaaagttgaa gggttacatg ttaatggacc aacaggtgga agtaagaaac cacttcacac
     1561 agatatggat actaatggtt atgaaacaga taaccttacc actgacccaa aaattgccca
     1621 tacggctgca agaaatgaaa gtgattttga tgaaaaaagt gagagacctg ccaaaaggcg
     1681 aagggtgaac agcaatggaa aagaaagtcc gggttcttct gaatttttcc aagatgcagt
     1741 ctcacatgga aaatttgaag aacttgaaaa cacagatgac taaattttag acttatttta
     1801 ctttctttgg agtaaattct ggtgtgacta aagttttcag ggttgatggg tgaccttaaa
     1861 aagttgactt ccttgaagca gttggttaaa aatttgaatt gtcctaactt tagtaaataa
     1921 gatttcataa ttctgccttt tgcagacttt ttactttaaa attgtgaagg cccttttaag
     1981 gatatataac aaatagttta gtaaatttga aagatatatc tgtaccttct catttgatgt
     2041 attaatccta aaatttcact acaaggtact ttttgcttag tttgatggca gagaagaaaa
     2101 aaacaagttc aaatttctga ttaacaccaa tttttctgag tttcttgaaa tgtcttttat
     2161 gacatttttc ttctccatac aaattgagtt atcattatta aggaaaccct tatgaatcct
     2221 gaaagttatg ctagcatgat ttttttatat atagaagttt aaaaataaac caagtcaggt
     2281 ttgtatatgt aaaattgttg acatcaatga tgtctttcca tattcttatc tgggcttaag
     2341 aaatacattc tgtatttttc cagattcttt gtagcctttg gaagattttt acagtacata
     2401 tgtcttgact gagctgtcct ttcttaatac aaaagcttgt ataattttct taacttgtac
     2461 agttggtaaa cttttatgag aggaattgat attctgagtc tgtcagcttt cattttattt
     2521 tgctaaggtt tttctaatga atttttaagt gtttgtgtag taactaagtc atgtttctta
     2581 tatccaggtg gtaaaagcat tcataaagga ttgtgaacat ttgttttttt caagtttcta
     2641 cttaaggaca aatagtttga gaactctgaa attaagcatg atacttagat cacatagttt
     2701 gttttgcatt tgctataatt ttcaaaatta tttttgaatc aagacaaaag tttaatgttg
     2761 gcttaagtgc ttaaatgtat catgctgacc agaatcctgt tcagttattt ttatatgcat
     2821 tacaaaattt cccatttttg cattaaataa acaggggaaa aggtcaagtg atacttagat
     2881 gttggcacac acaaggagtt ggcaggcaac agtattgatt ttatgaggaa aaagtgataa
     2941 agtcagaagg ttttagaaac ttccagttaa cagtccagct tttcagattt gatagtgtat
     3001 ttccaaaatg aaaataagat attcagtaac cactgctctg tgtgattaca aataggatca
     3061 tccatttgca tagccttaca atagtgccat tttattttta gtgcaaaatt cttgtttaaa
     3121 aaatgtagtt ttatacagct gatagaccaa cctatatcca aacttttata aaagattatt
     3181 aactattctt gttttatcac acgggcatac cccaaatgct tctactgatt cattttcagc
     3241 catcaaagag ccaatgcctt tttaaaataa atcttctgtg gtcttgtttt taatggctca
     3301 actgtctaat gcaattgagt agaggtttgc agtgagaaat tatggtttag gccttatccc
     3361 ccatgaagta ttactattaa cctatgttca gactgcttcc ctccaccaat gtgaacaact
     3421 ttttctcccc aaacagtgtt aaaagccact ttacaacact tgacttcata tgatgtagat
     3481 tcattgttgt tacatacaca tccaagtaaa tcaaagtttt gggtggaagt gttgagaagc
     3541 gtgaacaact tcttgttttt gttttaccta gaacattaat ttatccagaa tggcagcttt
     3601 tgcagatggt cactatccat tttctaaatc agattttatt atacgaatcc aaagtgtcct
     3661 agctctttgt caaaggtggt ctatagaaat agtgatgatg aactttaagt tgctgcaata
     3721 ttagagttgc cattttcacc tttttttttg aaagatgcat tttgtttgca ggtttgtgaa
     3781 gttcttgcag actaacatta caggaacatt ttaaataaat tctcaggcat gtttgcaaat
     3841 acggcacatg ttgtatacat gttaggaaat tttacttttc ttgatctttt taaagtatgc
     3901 ctaatgaaag acattccact attataatac ataatgctca gcttttcata gagaaatatt
     3961 taattgtatt ttatgtttat acaggtattt cacacagtac tttgttcttc ataacgcagc
     4021 cactataact tgatgtcatt gcactacttt aaatattttt agtaatacca tgaatttaat
     4081 ttgcttaaga tttagtacat ttcataactc ttgaactctt gacaaattgc attgggaaaa
     4141 gaaggcttcg ttaatagtta cttagtctcc ctcaccccat acctaccccc agcaaagcac
     4201 tatctgtctt catttggaat ggttttctgt tttatgatgt gctttcaaaa gagttcaaaa
     4261 tttgtaactc agttcaacac aagtctgttg agctttcaaa tgtatttgaa gtaatattca
     4321 aataggcatt taaaattatg aattagatgt tttaaaattt atgcatagta attttgcact
     4381 attaggaaat tcccttcccc tattccctgt ctgccattct gaatatgctt attaaaatat
     4441 ttttttaaac ata
//
LOCUS       XR_004347227            1686 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X15, misc_RNA.
ACCESSION   XR_004347227
VERSION     XR_004347227.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1686
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744931"
     misc_RNA        1..1686
                     /gene="MIER1"
                     /product="MIER1 transcriptional regulator, transcript
                     variant X15"
                     /db_xref="GeneID:116744931"
ORIGIN      
        1 acaaggaggc gggcggcccg ggccctaggc ccctcccagg ctctgagtct cccgggctgc
       61 aggcggatgg atggggcttc ttcaggcggc ggcggcagca gcggaggtgg cggcggcagc
      121 ggcggcagcg gctatggtgt ggtggctcga ttctcccagt gcctggctga gtttcggacg
      181 tggttaagaa ccaactggtt gaggttcaat gcagacaaga cggatgtgat gctgtgtttg
      241 agaactgctg atgggccaat aatttccaga atttggccat ctgttgagtc ttcaagtcca
      301 ggaggttcag caacatcaga tgaccatgaa tttgatccat cagctgacat gctggttcat
      361 gattttgatg atgaacgcac attagaagag gaagaaatga tggaaggaga aacaaacttc
      421 agttctgaaa tagaggatct tgcaagggaa ggcgacatgc caattcatga acttctcagc
      481 ctttatggtt atgatagtac tattcgacta cctgaggaag atgaggagga ggaggaggag
      541 gaagaaggtg aagatgatga agatgctgat aatgatgata acagtggctg tagtggggaa
      601 aataaagaag agaatataaa agattcctca ggtcaagagg atgaaactca gtcttccaat
      661 gatgatccat cacaatctgt tgcttctcaa gatgcccagg aaataatccg tccacgtcga
      721 tgtaaatatt ttgatacaaa tagtgaaata gaagaagaat ctgaagaaga tgaagattat
      781 ataccatcag aagactggaa aaaggagatt atggtgggct ccatgtttca agcagagatt
      841 ccagttggca tctgtagata caaagaaaat gaaaaagatg aggcagaaag aagggaagta
      901 acttgctggg gtcatacagt atatgaaaat gatgatcagc tcctgtggga ccctgagtac
      961 ttaccggaag acaaagtgat tgtatttctt aaggatgcat ctagaagaac aggtgatgag
     1021 aaaggtgtag aagcaattcc tgaaggatct cacataaaag acaatgaaca ggcattatat
     1081 gaattagtta aatgcaattt tgatacagaa gaagcattaa gaagattaag atttaatgta
     1141 aaagcagcta gagaggaatt atctgtttgg acagaggaag agtgtagaaa ttttgaacaa
     1201 gggttgaagg cctatggaaa ggactttcat ttgattcagg ctaataaagt tcgaacaagg
     1261 tcagttggtg aatgtgtagc attctattat atgtggaaaa aatctgaacg ttacgatttc
     1321 tttgctcagc aaacgcgatt tggaaaaaag aaatataatc ttcatcctgg tgtcacaaat
     1381 aatgttcaca catgaactac aggcaatctg tcgtcatcag cagtaagaac ataagaattg
     1441 ccatgctggg tcagacccat ggttcatcca gttttctctt tcagaaagca tcaccaaggg
     1501 aagtgttgtg ggctggctta gttggtcctc tgtgatgtca agctcaacag gttagggatt
     1561 acatggatcg tcttctagat gaaagtgaaa gtgctgcttc tagtcgagca ccatcccctc
     1621 ccccaactgc ctcaaacagt agtaacagcc agtctgagaa agaagatggc actataagca
     1681 atagta
//
LOCUS       XM_032615127            4423 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X16, mRNA.
ACCESSION   XM_032615127
VERSION     XM_032615127.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4423
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4423
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 long SRA reads, 12 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             218..1753
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X11"
                     /protein_id="XP_032471018.1"
                     /db_xref="GeneID:116744931"
                     /translation="MAEPSVESSSPGGSATSDDHEFDPSADMLVHDFDDERTLEEEEM
                     MEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTIRLPEEDEEEEEEEEGEDDEDADN
                     DDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSE
                     IEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDDQLLWDPEYL
                     PEDKVIVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFN
                     VKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSER
                     YDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKE
                     DGTISNSNQNGVSSNGPGETLNKEEVKVEGLHVNGPTGGSKKPLHTDMDTNGYETDNL
                     TTDPKIAHTAARNESDFDEKSERPAKRRRVNSNGKESPGSSEFFQDAVSHGKFEELEN
                     TDD"
     misc_feature    758..907
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1076..1210
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1076..1078,1166..1171,1175..1180,1184..1192,
                     1196..1204)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1238..>1678
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 tctagtccag ctcagcccgg gcgccgcgag ggggcggagt ggggtgtggt gggcgcgctc
       61 gggcggctcc tgcgcgttcc cgccgaggca gcggcggcgg gagcggcaga gacggtggcg
      121 gcggcggctg gagtcccgtt gccgagtctt acatccgggt tctggccgtg acccagctgc
      181 ggccgccgcg gagatgtgac ccgtcagtac ggcaaatatg gcggagccat ctgttgagtc
      241 ttcaagtcca ggaggttcag caacatcaga tgaccatgaa tttgatccat cagctgacat
      301 gctggttcat gattttgatg atgaacgcac attagaagag gaagaaatga tggaaggaga
      361 aacaaacttc agttctgaaa tagaggatct tgcaagggaa ggcgacatgc caattcatga
      421 acttctcagc ctttatggtt atgatagtac tattcgacta cctgaggaag atgaggagga
      481 ggaggaggag gaagaaggtg aagatgatga agatgctgat aatgatgata acagtggctg
      541 tagtggggaa aataaagaag agaatataaa agattcctca ggtcaagagg atgaaactca
      601 gtcttccaat gatgatccat cacaatctgt tgcttctcaa gatgcccagg aaataatccg
      661 tccacgtcga tgtaaatatt ttgatacaaa tagtgaaata gaagaagaat ctgaagaaga
      721 tgaagattat ataccatcag aagactggaa aaaggagatt atggtgggct ccatgtttca
      781 agcagagatt ccagttggca tctgtagata caaagaaaat gaaaaagtat atgaaaatga
      841 tgatcagctc ctgtgggacc ctgagtactt accggaagac aaagtgattg tatttcttaa
      901 ggatgcatct agaagaacag gtgatgagaa aggtgtagaa gcaattcctg aaggatctca
      961 cataaaagac aatgaacagg cattatatga attagttaaa tgcaattttg atacagaaga
     1021 agcattaaga agattaagat ttaatgtaaa agcagctaga gaggaattat ctgtttggac
     1081 agaggaagag tgtagaaatt ttgaacaagg gttgaaggcc tatggaaagg actttcattt
     1141 gattcaggct aataaagttc gaacaaggtc agttggtgaa tgtgtagcat tctattatat
     1201 gtggaaaaaa tctgaacgtt acgatttctt tgctcagcaa acgcgatttg gaaaaaagaa
     1261 atataatctt catcctggtg tcacggatta catggatcgt cttctagatg aaagtgaaag
     1321 tgctgcttct agtcgagcac catcccctcc cccaactgcc tcaaacagta gtaacagcca
     1381 gtctgagaaa gaagatggca ctataagcaa tagtaatcaa aatggggtgt catctaacgg
     1441 accaggtgaa acattaaaca aagaagaagt gaaagttgaa gggttacatg ttaatggacc
     1501 aacaggtgga agtaagaaac cacttcacac agatatggat actaatggtt atgaaacaga
     1561 taaccttacc actgacccaa aaattgccca tacggctgca agaaatgaaa gtgattttga
     1621 tgaaaaaagt gagagacctg ccaaaaggcg aagggtgaac agcaatggaa aagaaagtcc
     1681 gggttcttct gaatttttcc aagatgcagt ctcacatgga aaatttgaag aacttgaaaa
     1741 cacagatgac taaattttag acttatttta ctttctttgg agtaaattct ggtgtgacta
     1801 aagttttcag ggttgatggg tgaccttaaa aagttgactt ccttgaagca gttggttaaa
     1861 aatttgaatt gtcctaactt tagtaaataa gatttcataa ttctgccttt tgcagacttt
     1921 ttactttaaa attgtgaagg cccttttaag gatatataac aaatagttta gtaaatttga
     1981 aagatatatc tgtaccttct catttgatgt attaatccta aaatttcact acaaggtact
     2041 ttttgcttag tttgatggca gagaagaaaa aaacaagttc aaatttctga ttaacaccaa
     2101 tttttctgag tttcttgaaa tgtcttttat gacatttttc ttctccatac aaattgagtt
     2161 atcattatta aggaaaccct tatgaatcct gaaagttatg ctagcatgat ttttttatat
     2221 atagaagttt aaaaataaac caagtcaggt ttgtatatgt aaaattgttg acatcaatga
     2281 tgtctttcca tattcttatc tgggcttaag aaatacattc tgtatttttc cagattcttt
     2341 gtagcctttg gaagattttt acagtacata tgtcttgact gagctgtcct ttcttaatac
     2401 aaaagcttgt ataattttct taacttgtac agttggtaaa cttttatgag aggaattgat
     2461 attctgagtc tgtcagcttt cattttattt tgctaaggtt tttctaatga atttttaagt
     2521 gtttgtgtag taactaagtc atgtttctta tatccaggtg gtaaaagcat tcataaagga
     2581 ttgtgaacat ttgttttttt caagtttcta cttaaggaca aatagtttga gaactctgaa
     2641 attaagcatg atacttagat cacatagttt gttttgcatt tgctataatt ttcaaaatta
     2701 tttttgaatc aagacaaaag tttaatgttg gcttaagtgc ttaaatgtat catgctgacc
     2761 agaatcctgt tcagttattt ttatatgcat tacaaaattt cccatttttg cattaaataa
     2821 acaggggaaa aggtcaagtg atacttagat gttggcacac acaaggagtt ggcaggcaac
     2881 agtattgatt ttatgaggaa aaagtgataa agtcagaagg ttttagaaac ttccagttaa
     2941 cagtccagct tttcagattt gatagtgtat ttccaaaatg aaaataagat attcagtaac
     3001 cactgctctg tgtgattaca aataggatca tccatttgca tagccttaca atagtgccat
     3061 tttattttta gtgcaaaatt cttgtttaaa aaatgtagtt ttatacagct gatagaccaa
     3121 cctatatcca aacttttata aaagattatt aactattctt gttttatcac acgggcatac
     3181 cccaaatgct tctactgatt cattttcagc catcaaagag ccaatgcctt tttaaaataa
     3241 atcttctgtg gtcttgtttt taatggctca actgtctaat gcaattgagt agaggtttgc
     3301 agtgagaaat tatggtttag gccttatccc ccatgaagta ttactattaa cctatgttca
     3361 gactgcttcc ctccaccaat gtgaacaact ttttctcccc aaacagtgtt aaaagccact
     3421 ttacaacact tgacttcata tgatgtagat tcattgttgt tacatacaca tccaagtaaa
     3481 tcaaagtttt gggtggaagt gttgagaagc gtgaacaact tcttgttttt gttttaccta
     3541 gaacattaat ttatccagaa tggcagcttt tgcagatggt cactatccat tttctaaatc
     3601 agattttatt atacgaatcc aaagtgtcct agctctttgt caaaggtggt ctatagaaat
     3661 agtgatgatg aactttaagt tgctgcaata ttagagttgc cattttcacc tttttttttg
     3721 aaagatgcat tttgtttgca ggtttgtgaa gttcttgcag actaacatta caggaacatt
     3781 ttaaataaat tctcaggcat gtttgcaaat acggcacatg ttgtatacat gttaggaaat
     3841 tttacttttc ttgatctttt taaagtatgc ctaatgaaag acattccact attataatac
     3901 ataatgctca gcttttcata gagaaatatt taattgtatt ttatgtttat acaggtattt
     3961 cacacagtac tttgttcttc ataacgcagc cactataact tgatgtcatt gcactacttt
     4021 aaatattttt agtaatacca tgaatttaat ttgcttaaga tttagtacat ttcataactc
     4081 ttgaactctt gacaaattgc attgggaaaa gaaggcttcg ttaatagtta cttagtctcc
     4141 ctcaccccat acctaccccc agcaaagcac tatctgtctt catttggaat ggttttctgt
     4201 tttatgatgt gctttcaaaa gagttcaaaa tttgtaactc agttcaacac aagtctgttg
     4261 agctttcaaa tgtatttgaa gtaatattca aataggcatt taaaattatg aattagatgt
     4321 tttaaaattt atgcatagta attttgcact attaggaaat tcccttcccc tattccctgt
     4381 ctgccattct gaatatgctt attaaaatat ttttttaaac ata
//
LOCUS       XM_032615136            4611 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X17, mRNA.
ACCESSION   XM_032615136
VERSION     XM_032615136.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4611
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4611
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744931"
     CDS             445..1941
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X12"
                     /protein_id="XP_032471027.1"
                     /db_xref="GeneID:116744931"
                     /translation="MLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLS
                     LYGYDSTIRLPEEDEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQS
                     SNDDPSQSVASQDAQEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMF
                     QAEIPVGICRYKENEKDEAERREVTCWGHTVYENDDQLLWDPEYLPEDKVIVFLKDAS
                     RRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTE
                     EECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKK
                     KYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVS
                     SNGPGETLNKEEVKVEGLHVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARN
                     ESDFDEKSERPAKRRRVNSNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    904..1095
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1264..1398
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1264..1266,1354..1359,1363..1368,1372..1380,
                     1384..1392)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1426..>1866
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 ccctctagtc cagctcagcc cgggcgccgc gagggggcgg agtggggtgt ggtgggcgcg
       61 ctcgggcggc tcctgcgcgt tcccgccgag gcagcggcgg cgggagcggc agagacggtg
      121 gcggcggcgg ctggagtccc gttgccgagt cttacatccg ggttctggcc gtgacccagc
      181 tgcggccgcc gcggagatgt gacccgtcag tacggcaaat atggcggagc catctgttga
      241 gtcttcaagt ccaggctctt ttcaggtatt ctttgaggca gaatatctac tgcttctgaa
      301 actcgggctt acaggagcct tgaagcacag tgaaagcaaa ggcattggaa ttggcagaac
      361 caggattaaa attccgttct tggcacctac tggctctgag gttcagcaac atcagatgac
      421 catgaatttg atccatcagc tgacatgctg gttcatgatt ttgatgatga acgcacatta
      481 gaagaggaag aaatgatgga aggagaaaca aacttcagtt ctgaaataga ggatcttgca
      541 agggaaggcg acatgccaat tcatgaactt ctcagccttt atggttatga tagtactatt
      601 cgactacctg aggaagatga ggaggaggag gaggaggaag aaggtgaaga tgatgaagat
      661 gctgataatg atgataacag tggctgtagt ggggaaaata aagaagagaa tataaaagat
      721 tcctcaggtc aagaggatga aactcagtct tccaatgatg atccatcaca atctgttgct
      781 tctcaagatg cccaggaaat aatccgtcca cgtcgatgta aatattttga tacaaatagt
      841 gaaatagaag aagaatctga agaagatgaa gattatatac catcagaaga ctggaaaaag
      901 gagattatgg tgggctccat gtttcaagca gagattccag ttggcatctg tagatacaaa
      961 gaaaatgaaa aagatgaggc agaaagaagg gaagtaactt gctggggtca tacagtatat
     1021 gaaaatgatg atcagctcct gtgggaccct gagtacttac cggaagacaa agtgattgta
     1081 tttcttaagg atgcatctag aagaacaggt gatgagaaag gtgtagaagc aattcctgaa
     1141 ggatctcaca taaaagacaa tgaacaggca ttatatgaat tagttaaatg caattttgat
     1201 acagaagaag cattaagaag attaagattt aatgtaaaag cagctagaga ggaattatct
     1261 gtttggacag aggaagagtg tagaaatttt gaacaagggt tgaaggccta tggaaaggac
     1321 tttcatttga ttcaggctaa taaagttcga acaaggtcag ttggtgaatg tgtagcattc
     1381 tattatatgt ggaaaaaatc tgaacgttac gatttctttg ctcagcaaac gcgatttgga
     1441 aaaaagaaat ataatcttca tcctggtgtc acggattaca tggatcgtct tctagatgaa
     1501 agtgaaagtg ctgcttctag tcgagcacca tcccctcccc caactgcctc aaacagtagt
     1561 aacagccagt ctgagaaaga agatggcact ataagcaata gtaatcaaaa tggggtgtca
     1621 tctaacggac caggtgaaac attaaacaaa gaagaagtga aagttgaagg gttacatgtt
     1681 aatggaccaa caggtggaag taagaaacca cttcacacag atatggatac taatggttat
     1741 gaaacagata accttaccac tgacccaaaa attgcccata cggctgcaag aaatgaaagt
     1801 gattttgatg aaaaaagtga gagacctgcc aaaaggcgaa gggtgaacag caatggaaaa
     1861 gaaagtccgg gttcttctga atttttccaa gatgcagtct cacatggaaa atttgaagaa
     1921 cttgaaaaca cagatgacta aattttagac ttattttact ttctttggag taaattctgg
     1981 tgtgactaaa gttttcaggg ttgatgggtg accttaaaaa gttgacttcc ttgaagcagt
     2041 tggttaaaaa tttgaattgt cctaacttta gtaaataaga tttcataatt ctgccttttg
     2101 cagacttttt actttaaaat tgtgaaggcc cttttaagga tatataacaa atagtttagt
     2161 aaatttgaaa gatatatctg taccttctca tttgatgtat taatcctaaa atttcactac
     2221 aaggtacttt ttgcttagtt tgatggcaga gaagaaaaaa acaagttcaa atttctgatt
     2281 aacaccaatt tttctgagtt tcttgaaatg tcttttatga catttttctt ctccatacaa
     2341 attgagttat cattattaag gaaaccctta tgaatcctga aagttatgct agcatgattt
     2401 ttttatatat agaagtttaa aaataaacca agtcaggttt gtatatgtaa aattgttgac
     2461 atcaatgatg tctttccata ttcttatctg ggcttaagaa atacattctg tatttttcca
     2521 gattctttgt agcctttgga agatttttac agtacatatg tcttgactga gctgtccttt
     2581 cttaatacaa aagcttgtat aattttctta acttgtacag ttggtaaact tttatgagag
     2641 gaattgatat tctgagtctg tcagctttca ttttattttg ctaaggtttt tctaatgaat
     2701 ttttaagtgt ttgtgtagta actaagtcat gtttcttata tccaggtggt aaaagcattc
     2761 ataaaggatt gtgaacattt gtttttttca agtttctact taaggacaaa tagtttgaga
     2821 actctgaaat taagcatgat acttagatca catagtttgt tttgcatttg ctataatttt
     2881 caaaattatt tttgaatcaa gacaaaagtt taatgttggc ttaagtgctt aaatgtatca
     2941 tgctgaccag aatcctgttc agttattttt atatgcatta caaaatttcc catttttgca
     3001 ttaaataaac aggggaaaag gtcaagtgat acttagatgt tggcacacac aaggagttgg
     3061 caggcaacag tattgatttt atgaggaaaa agtgataaag tcagaaggtt ttagaaactt
     3121 ccagttaaca gtccagcttt tcagatttga tagtgtattt ccaaaatgaa aataagatat
     3181 tcagtaacca ctgctctgtg tgattacaaa taggatcatc catttgcata gccttacaat
     3241 agtgccattt tatttttagt gcaaaattct tgtttaaaaa atgtagtttt atacagctga
     3301 tagaccaacc tatatccaaa cttttataaa agattattaa ctattcttgt tttatcacac
     3361 gggcataccc caaatgcttc tactgattca ttttcagcca tcaaagagcc aatgcctttt
     3421 taaaataaat cttctgtggt cttgttttta atggctcaac tgtctaatgc aattgagtag
     3481 aggtttgcag tgagaaatta tggtttaggc cttatccccc atgaagtatt actattaacc
     3541 tatgttcaga ctgcttccct ccaccaatgt gaacaacttt ttctccccaa acagtgttaa
     3601 aagccacttt acaacacttg acttcatatg atgtagattc attgttgtta catacacatc
     3661 caagtaaatc aaagttttgg gtggaagtgt tgagaagcgt gaacaacttc ttgtttttgt
     3721 tttacctaga acattaattt atccagaatg gcagcttttg cagatggtca ctatccattt
     3781 tctaaatcag attttattat acgaatccaa agtgtcctag ctctttgtca aaggtggtct
     3841 atagaaatag tgatgatgaa ctttaagttg ctgcaatatt agagttgcca ttttcacctt
     3901 tttttttgaa agatgcattt tgtttgcagg tttgtgaagt tcttgcagac taacattaca
     3961 ggaacatttt aaataaattc tcaggcatgt ttgcaaatac ggcacatgtt gtatacatgt
     4021 taggaaattt tacttttctt gatcttttta aagtatgcct aatgaaagac attccactat
     4081 tataatacat aatgctcagc ttttcataga gaaatattta attgtatttt atgtttatac
     4141 aggtatttca cacagtactt tgttcttcat aacgcagcca ctataacttg atgtcattgc
     4201 actactttaa atatttttag taataccatg aatttaattt gcttaagatt tagtacattt
     4261 cataactctt gaactcttga caaattgcat tgggaaaaga aggcttcgtt aatagttact
     4321 tagtctccct caccccatac ctacccccag caaagcacta tctgtcttca tttggaatgg
     4381 ttttctgttt tatgatgtgc tttcaaaaga gttcaaaatt tgtaactcag ttcaacacaa
     4441 gtctgttgag ctttcaaatg tatttgaagt aatattcaaa taggcattta aaattatgaa
     4501 ttagatgttt taaaatttat gcatagtaat tttgcactat taggaaattc ccttccccta
     4561 ttccctgtct gccattctga atatgcttat taaaatattt ttttaaacat a
//
LOCUS       XM_032615146            4556 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X18, mRNA.
ACCESSION   XM_032615146
VERSION     XM_032615146.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4556
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4556
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744931"
     CDS             432..1886
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X13"
                     /protein_id="XP_032471037.1"
                     /db_xref="GeneID:116744931"
                     /translation="MLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELLS
                     LYGYDSTIRLPEEDEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQS
                     SNDDPSQSVASQDAQEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMF
                     QAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIPE
                     GSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYG
                     KDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDR
                     LLDESESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEVK
                     VEGLHVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAKR
                     RRVNSNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    891..1040
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1209..1343
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1209..1211,1299..1304,1308..1313,1317..1325,
                     1329..1337)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1371..>1811
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 ctctagtcca gctcagcccg ggcgccgcga gggggcggag tggggtgtgg tgggcgcgct
       61 cgggcggctc ctgcgcgttc ccgccgaggc agcggcggcg ggagcggcag agacggtggc
      121 ggcggcggct ggagtcccgt tgccgagtct tacatccggg ttctggccgt gacccagctg
      181 cggccgccgc ggagatgtga cccgtcagta cggcaaatat ggcggagcca tctgttgagt
      241 cttcaagtcc aggtattctt tgaggcagaa tatctactgc ttctgaaact cgggcttaca
      301 ggagccttga agcacagtga aagcaaaggc attggaattg gcagaaccag gattaaaatt
      361 ccgttcttgg cacctactgg ctctgaggtt cagcaacatc agatgaccat gaatttgatc
      421 catcagctga catgctggtt catgattttg atgatgaacg cacattagaa gaggaagaaa
      481 tgatggaagg agaaacaaac ttcagttctg aaatagagga tcttgcaagg gaaggcgaca
      541 tgccaattca tgaacttctc agcctttatg gttatgatag tactattcga ctacctgagg
      601 aagatgagga ggaggaggag gaggaagaag gtgaagatga tgaagatgct gataatgatg
      661 ataacagtgg ctgtagtggg gaaaataaag aagagaatat aaaagattcc tcaggtcaag
      721 aggatgaaac tcagtcttcc aatgatgatc catcacaatc tgttgcttct caagatgccc
      781 aggaaataat ccgtccacgt cgatgtaaat attttgatac aaatagtgaa atagaagaag
      841 aatctgaaga agatgaagat tatataccat cagaagactg gaaaaaggag attatggtgg
      901 gctccatgtt tcaagcagag attccagttg gcatctgtag atacaaagaa aatgaaaaag
      961 tatatgaaaa tgatgatcag ctcctgtggg accctgagta cttaccggaa gacaaagtga
     1021 ttgtatttct taaggatgca tctagaagaa caggtgatga gaaaggtgta gaagcaattc
     1081 ctgaaggatc tcacataaaa gacaatgaac aggcattata tgaattagtt aaatgcaatt
     1141 ttgatacaga agaagcatta agaagattaa gatttaatgt aaaagcagct agagaggaat
     1201 tatctgtttg gacagaggaa gagtgtagaa attttgaaca agggttgaag gcctatggaa
     1261 aggactttca tttgattcag gctaataaag ttcgaacaag gtcagttggt gaatgtgtag
     1321 cattctatta tatgtggaaa aaatctgaac gttacgattt ctttgctcag caaacgcgat
     1381 ttggaaaaaa gaaatataat cttcatcctg gtgtcacgga ttacatggat cgtcttctag
     1441 atgaaagtga aagtgctgct tctagtcgag caccatcccc tcccccaact gcctcaaaca
     1501 gtagtaacag ccagtctgag aaagaagatg gcactataag caatagtaat caaaatgggg
     1561 tgtcatctaa cggaccaggt gaaacattaa acaaagaaga agtgaaagtt gaagggttac
     1621 atgttaatgg accaacaggt ggaagtaaga aaccacttca cacagatatg gatactaatg
     1681 gttatgaaac agataacctt accactgacc caaaaattgc ccatacggct gcaagaaatg
     1741 aaagtgattt tgatgaaaaa agtgagagac ctgccaaaag gcgaagggtg aacagcaatg
     1801 gaaaagaaag tccgggttct tctgaatttt tccaagatgc agtctcacat ggaaaatttg
     1861 aagaacttga aaacacagat gactaaattt tagacttatt ttactttctt tggagtaaat
     1921 tctggtgtga ctaaagtttt cagggttgat gggtgacctt aaaaagttga cttccttgaa
     1981 gcagttggtt aaaaatttga attgtcctaa ctttagtaaa taagatttca taattctgcc
     2041 ttttgcagac tttttacttt aaaattgtga aggccctttt aaggatatat aacaaatagt
     2101 ttagtaaatt tgaaagatat atctgtacct tctcatttga tgtattaatc ctaaaatttc
     2161 actacaaggt actttttgct tagtttgatg gcagagaaga aaaaaacaag ttcaaatttc
     2221 tgattaacac caatttttct gagtttcttg aaatgtcttt tatgacattt ttcttctcca
     2281 tacaaattga gttatcatta ttaaggaaac ccttatgaat cctgaaagtt atgctagcat
     2341 gattttttta tatatagaag tttaaaaata aaccaagtca ggtttgtata tgtaaaattg
     2401 ttgacatcaa tgatgtcttt ccatattctt atctgggctt aagaaataca ttctgtattt
     2461 ttccagattc tttgtagcct ttggaagatt tttacagtac atatgtcttg actgagctgt
     2521 cctttcttaa tacaaaagct tgtataattt tcttaacttg tacagttggt aaacttttat
     2581 gagaggaatt gatattctga gtctgtcagc tttcatttta ttttgctaag gtttttctaa
     2641 tgaattttta agtgtttgtg tagtaactaa gtcatgtttc ttatatccag gtggtaaaag
     2701 cattcataaa ggattgtgaa catttgtttt tttcaagttt ctacttaagg acaaatagtt
     2761 tgagaactct gaaattaagc atgatactta gatcacatag tttgttttgc atttgctata
     2821 attttcaaaa ttatttttga atcaagacaa aagtttaatg ttggcttaag tgcttaaatg
     2881 tatcatgctg accagaatcc tgttcagtta tttttatatg cattacaaaa tttcccattt
     2941 ttgcattaaa taaacagggg aaaaggtcaa gtgatactta gatgttggca cacacaagga
     3001 gttggcaggc aacagtattg attttatgag gaaaaagtga taaagtcaga aggttttaga
     3061 aacttccagt taacagtcca gcttttcaga tttgatagtg tatttccaaa atgaaaataa
     3121 gatattcagt aaccactgct ctgtgtgatt acaaatagga tcatccattt gcatagcctt
     3181 acaatagtgc cattttattt ttagtgcaaa attcttgttt aaaaaatgta gttttataca
     3241 gctgatagac caacctatat ccaaactttt ataaaagatt attaactatt cttgttttat
     3301 cacacgggca taccccaaat gcttctactg attcattttc agccatcaaa gagccaatgc
     3361 ctttttaaaa taaatcttct gtggtcttgt ttttaatggc tcaactgtct aatgcaattg
     3421 agtagaggtt tgcagtgaga aattatggtt taggccttat cccccatgaa gtattactat
     3481 taacctatgt tcagactgct tccctccacc aatgtgaaca actttttctc cccaaacagt
     3541 gttaaaagcc actttacaac acttgacttc atatgatgta gattcattgt tgttacatac
     3601 acatccaagt aaatcaaagt tttgggtgga agtgttgaga agcgtgaaca acttcttgtt
     3661 tttgttttac ctagaacatt aatttatcca gaatggcagc ttttgcagat ggtcactatc
     3721 cattttctaa atcagatttt attatacgaa tccaaagtgt cctagctctt tgtcaaaggt
     3781 ggtctataga aatagtgatg atgaacttta agttgctgca atattagagt tgccattttc
     3841 accttttttt ttgaaagatg cattttgttt gcaggtttgt gaagttcttg cagactaaca
     3901 ttacaggaac attttaaata aattctcagg catgtttgca aatacggcac atgttgtata
     3961 catgttagga aattttactt ttcttgatct ttttaaagta tgcctaatga aagacattcc
     4021 actattataa tacataatgc tcagcttttc atagagaaat atttaattgt attttatgtt
     4081 tatacaggta tttcacacag tactttgttc ttcataacgc agccactata acttgatgtc
     4141 attgcactac tttaaatatt tttagtaata ccatgaattt aatttgctta agatttagta
     4201 catttcataa ctcttgaact cttgacaaat tgcattggga aaagaaggct tcgttaatag
     4261 ttacttagtc tccctcaccc catacctacc cccagcaaag cactatctgt cttcatttgg
     4321 aatggttttc tgttttatga tgtgctttca aaagagttca aaatttgtaa ctcagttcaa
     4381 cacaagtctg ttgagctttc aaatgtattt gaagtaatat tcaaataggc atttaaaatt
     4441 atgaattaga tgttttaaaa tttatgcata gtaattttgc actattagga aattcccttc
     4501 ccctattccc tgtctgccat tctgaatatg cttattaaaa tattttttta aacata
//
LOCUS       XM_032615156            4540 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MIER1 transcriptional regulator (MIER1),
            transcript variant X19, mRNA.
ACCESSION   XM_032615156
VERSION     XM_032615156.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4540
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4540
                     /gene="MIER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 5 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116744931"
     CDS             65..1870
                     /gene="MIER1"
                     /codon_start=1
                     /product="mesoderm induction early response protein 1
                     isoform X14"
                     /protein_id="XP_032471047.1"
                     /db_xref="GeneID:116744931"
                     /translation="MDGASSGGGGSSGGGGGSGGSGYGVVARFSQCLAEFRTWLRTNW
                     LRFNADKTDVMLKMCIRCLCLIGLQTVCGLFSCHITSHLLSLQVQKWMKYLTAHEGTG
                     GSATSDDHEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGDMPIHELL
                     SLYGYDSTIRLPEEDEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQ
                     SSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSM
                     FQAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKVIVFLKDASRRTGDEKGVEAIP
                     EGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAY
                     GKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMD
                     RLLDESESAASSRAPSPPPTASNSSNSQSEKEDGTISNSNQNGVSSNGPGETLNKEEV
                     KVEGLHVNGPTGGSKKPLHTDMDTNGYETDNLTTDPKIAHTAARNESDFDEKSERPAK
                     RRRVNSNGKESPGSSEFFQDAVSHGKFEELENTDD"
     misc_feature    875..1024
                     /gene="MIER1"
                     /note="ELM2 domain; Region: ELM2; pfam01448"
                     /db_xref="CDD:460214"
     misc_feature    1193..1327
                     /gene="MIER1"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; Region: SANT_MTA3_like; cd11661"
                     /db_xref="CDD:212559"
     misc_feature    order(1193..1195,1283..1288,1292..1297,1301..1309,
                     1313..1321)
                     /gene="MIER1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212559"
     misc_feature    1355..>1795
                     /gene="MIER1"
                     /note="Mesoderm induction early response protein 1/3
                     C-terminal; Region: MIER1_3_C; pfam19426"
                     /db_xref="CDD:437258"
ORIGIN      
        1 aaggaggcgg gcggcccggg ccctaggccc ctcccaggct ctgagtctcc cgggctgcag
       61 gcggatggat ggggcttctt caggcggcgg cggcagcagc ggaggtggcg gcggcagcgg
      121 cggcagcggc tatggtgtgg tggctcgatt ctcccagtgc ctggctgagt ttcggacgtg
      181 gttaagaacc aactggttga ggttcaatgc agacaagacg gatgtgatgc tgaaaatgtg
      241 catcagatgt ttatgtttaa ttggtttaca gactgtctgt ggactctttt cctgtcatat
      301 taccagccat ctgttgagtc ttcaagtcca gaaatggatg aaatatttga ctgcccatga
      361 aggtacagga ggttcagcaa catcagatga ccatgaattt gatccatcag ctgacatgct
      421 ggttcatgat tttgatgatg aacgcacatt agaagaggaa gaaatgatgg aaggagaaac
      481 aaacttcagt tctgaaatag aggatcttgc aagggaaggc gacatgccaa ttcatgaact
      541 tctcagcctt tatggttatg atagtactat tcgactacct gaggaagatg aggaggagga
      601 ggaggaggaa gaaggtgaag atgatgaaga tgctgataat gatgataaca gtggctgtag
      661 tggggaaaat aaagaagaga atataaaaga ttcctcaggt caagaggatg aaactcagtc
      721 ttccaatgat gatccatcac aatctgttgc ttctcaagat gcccaggaaa taatccgtcc
      781 acgtcgatgt aaatattttg atacaaatag tgaaatagaa gaagaatctg aagaagatga
      841 agattatata ccatcagaag actggaaaaa ggagattatg gtgggctcca tgtttcaagc
      901 agagattcca gttggcatct gtagatacaa agaaaatgaa aaagtatatg aaaatgatga
      961 tcagctcctg tgggaccctg agtacttacc ggaagacaaa gtgattgtat ttcttaagga
     1021 tgcatctaga agaacaggtg atgagaaagg tgtagaagca attcctgaag gatctcacat
     1081 aaaagacaat gaacaggcat tatatgaatt agttaaatgc aattttgata cagaagaagc
     1141 attaagaaga ttaagattta atgtaaaagc agctagagag gaattatctg tttggacaga
     1201 ggaagagtgt agaaattttg aacaagggtt gaaggcctat ggaaaggact ttcatttgat
     1261 tcaggctaat aaagttcgaa caaggtcagt tggtgaatgt gtagcattct attatatgtg
     1321 gaaaaaatct gaacgttacg atttctttgc tcagcaaacg cgatttggaa aaaagaaata
     1381 taatcttcat cctggtgtca cggattacat ggatcgtctt ctagatgaaa gtgaaagtgc
     1441 tgcttctagt cgagcaccat cccctccccc aactgcctca aacagtagta acagccagtc
     1501 tgagaaagaa gatggcacta taagcaatag taatcaaaat ggggtgtcat ctaacggacc
     1561 aggtgaaaca ttaaacaaag aagaagtgaa agttgaaggg ttacatgtta atggaccaac
     1621 aggtggaagt aagaaaccac ttcacacaga tatggatact aatggttatg aaacagataa
     1681 ccttaccact gacccaaaaa ttgcccatac ggctgcaaga aatgaaagtg attttgatga
     1741 aaaaagtgag agacctgcca aaaggcgaag ggtgaacagc aatggaaaag aaagtccggg
     1801 ttcttctgaa tttttccaag atgcagtctc acatggaaaa tttgaagaac ttgaaaacac
     1861 agatgactaa attttagact tattttactt tctttggagt aaattctggt gtgactaaag
     1921 ttttcagggt tgatgggtga ccttaaaaag ttgacttcct tgaagcagtt ggttaaaaat
     1981 ttgaattgtc ctaactttag taaataagat ttcataattc tgccttttgc agacttttta
     2041 ctttaaaatt gtgaaggccc ttttaaggat atataacaaa tagtttagta aatttgaaag
     2101 atatatctgt accttctcat ttgatgtatt aatcctaaaa tttcactaca aggtactttt
     2161 tgcttagttt gatggcagag aagaaaaaaa caagttcaaa tttctgatta acaccaattt
     2221 ttctgagttt cttgaaatgt cttttatgac atttttcttc tccatacaaa ttgagttatc
     2281 attattaagg aaacccttat gaatcctgaa agttatgcta gcatgatttt tttatatata
     2341 gaagtttaaa aataaaccaa gtcaggtttg tatatgtaaa attgttgaca tcaatgatgt
     2401 ctttccatat tcttatctgg gcttaagaaa tacattctgt atttttccag attctttgta
     2461 gcctttggaa gatttttaca gtacatatgt cttgactgag ctgtcctttc ttaatacaaa
     2521 agcttgtata attttcttaa cttgtacagt tggtaaactt ttatgagagg aattgatatt
     2581 ctgagtctgt cagctttcat tttattttgc taaggttttt ctaatgaatt tttaagtgtt
     2641 tgtgtagtaa ctaagtcatg tttcttatat ccaggtggta aaagcattca taaaggattg
     2701 tgaacatttg tttttttcaa gtttctactt aaggacaaat agtttgagaa ctctgaaatt
     2761 aagcatgata cttagatcac atagtttgtt ttgcatttgc tataattttc aaaattattt
     2821 ttgaatcaag acaaaagttt aatgttggct taagtgctta aatgtatcat gctgaccaga
     2881 atcctgttca gttattttta tatgcattac aaaatttccc atttttgcat taaataaaca
     2941 ggggaaaagg tcaagtgata cttagatgtt ggcacacaca aggagttggc aggcaacagt
     3001 attgatttta tgaggaaaaa gtgataaagt cagaaggttt tagaaacttc cagttaacag
     3061 tccagctttt cagatttgat agtgtatttc caaaatgaaa ataagatatt cagtaaccac
     3121 tgctctgtgt gattacaaat aggatcatcc atttgcatag ccttacaata gtgccatttt
     3181 atttttagtg caaaattctt gtttaaaaaa tgtagtttta tacagctgat agaccaacct
     3241 atatccaaac ttttataaaa gattattaac tattcttgtt ttatcacacg ggcatacccc
     3301 aaatgcttct actgattcat tttcagccat caaagagcca atgccttttt aaaataaatc
     3361 ttctgtggtc ttgtttttaa tggctcaact gtctaatgca attgagtaga ggtttgcagt
     3421 gagaaattat ggtttaggcc ttatccccca tgaagtatta ctattaacct atgttcagac
     3481 tgcttccctc caccaatgtg aacaactttt tctccccaaa cagtgttaaa agccacttta
     3541 caacacttga cttcatatga tgtagattca ttgttgttac atacacatcc aagtaaatca
     3601 aagttttggg tggaagtgtt gagaagcgtg aacaacttct tgtttttgtt ttacctagaa
     3661 cattaattta tccagaatgg cagcttttgc agatggtcac tatccatttt ctaaatcaga
     3721 ttttattata cgaatccaaa gtgtcctagc tctttgtcaa aggtggtcta tagaaatagt
     3781 gatgatgaac tttaagttgc tgcaatatta gagttgccat tttcaccttt ttttttgaaa
     3841 gatgcatttt gtttgcaggt ttgtgaagtt cttgcagact aacattacag gaacatttta
     3901 aataaattct caggcatgtt tgcaaatacg gcacatgttg tatacatgtt aggaaatttt
     3961 acttttcttg atctttttaa agtatgccta atgaaagaca ttccactatt ataatacata
     4021 atgctcagct tttcatagag aaatatttaa ttgtatttta tgtttataca ggtatttcac
     4081 acagtacttt gttcttcata acgcagccac tataacttga tgtcattgca ctactttaaa
     4141 tatttttagt aataccatga atttaatttg cttaagattt agtacatttc ataactcttg
     4201 aactcttgac aaattgcatt gggaaaagaa ggcttcgtta atagttactt agtctccctc
     4261 accccatacc tacccccagc aaagcactat ctgtcttcat ttggaatggt tttctgtttt
     4321 atgatgtgct ttcaaaagag ttcaaaattt gtaactcagt tcaacacaag tctgttgagc
     4381 tttcaaatgt atttgaagta atattcaaat aggcatttaa aattatgaat tagatgtttt
     4441 aaaatttatg catagtaatt ttgcactatt aggaaattcc cttcccctat tccctgtctg
     4501 ccattctgaa tatgcttatt aaaatatttt tttaaacata
//
LOCUS       XM_032615169             465 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus insulin like 5 (INSL5), mRNA.
ACCESSION   XM_032615169
VERSION     XM_032615169.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..465
                     /gene="INSL5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 73% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116744992"
     CDS             1..405
                     /gene="INSL5"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:103..105,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: insulin-like peptide INSL5"
                     /protein_id="XP_032471060.1"
                     /db_xref="GeneID:116744992"
                     /translation="MRGFIFTLFLFSLLLAISEVKSEESRKLCGLEYIXTVIYTCASS
                     RWRKHLESIPQGQQAERGNLFQLPNEQISEESPVQNLPKTDSSEEESLQGEQLPTEGL
                     RRSKKYSVMSRQDLQKLCCTEVCSMSDLSALC"
     misc_feature    73..402
                     /gene="INSL5"
                     /note="Insulin/insulin-like growth factor/relaxin family;
                     insulin family of proteins. Members include a number of
                     active peptides which are evolutionary related including
                     insulin, relaxin, prorelaxin, insulin-like growth factors
                     I and II, mammalian Leydig...; Region: IlGF_like; cl02453"
                     /db_xref="CDD:470583"
ORIGIN      
        1 atgaggggtt tcatttttac tttgtttctc ttctctctcc tgcttgccat ctcagaagtg
       61 aagagtgaag aatccaggaa gctctgcggg ctcgagtaca tatgaactgt catttacacc
      121 tgtgccagct cccggtggag aaagcacctg gagtcgatcc cacaaggtca gcaagctgag
      181 agaggaaacc tcttccagct gcctaatgaa cagatttccg aggaaagccc agtgcaaaac
      241 cttccaaaga cggattcctc ggaggaggaa agtcttcagg gagaacagct gcccacggaa
      301 gggcttcgga ggtcaaagaa gtattcggtg atgtcaagac aagacttgca aaagttgtgc
      361 tgcaccgaag tctgttccat gtctgacttg agcgctcttt gttaggacaa acaaatcccc
      421 aagggtggca gagttttagc acacctttaa tcacggtgtt ttact
//
LOCUS       XM_032615184            2511 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DIRAS family GTPase 3 (DIRAS3),
            transcript variant X1, mRNA.
ACCESSION   XM_032615184
VERSION     XM_032615184.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2511
                     /gene="DIRAS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116744997"
     CDS             1151..1843
                     /gene="DIRAS3"
                     /codon_start=1
                     /product="GTP-binding protein Di-Ras3"
                     /protein_id="XP_032471075.1"
                     /db_xref="GeneID:116744997"
                     /translation="MGNSCFGLKERLMKRLRPLPTVIVIRTCLPQRRSRDFRVVVLGS
                     AGVGKSALVQRWVRGNFREAYLPTIEDTYRQALGCSHKAGALHITDTTGGRRYRGLQR
                     LAIARGHAFILVYSVTKKQTLEELKPLYELIRQLKGNNPQKCPIILVGNKCDESPREV
                     SEKEGAAYASEWNCAFLETSAKMNINVQELFQMLINFEKKPAAAAGAQPPQKKSQIPK
                     TAEKLLGKCIIM"
     misc_feature    1256..1747
                     /gene="DIRAS3"
                     /note="A Ras homolog member I (ARHI); Region: ARHI_like;
                     cd04140"
                     /db_xref="CDD:206711"
     misc_feature    1277..1300
                     /gene="DIRAS3"
                     /note="G1 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(1280..1285,1424..1429)
                     /gene="DIRAS3"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(1286..1303,1331..1339,1343..1345,1352..1354,
                     1601..1606,1610..1615,1688..1696)
                     /gene="DIRAS3"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206711"
     misc_feature    order(1298..1303,1343..1345,1349..1351,1367..1372,
                     1409..1414,1418..1420,1424..1429,1694..1696)
                     /gene="DIRAS3"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(1346..1351,1361..1372)
                     /gene="DIRAS3"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206711"
     misc_feature    1346..1369
                     /gene="DIRAS3"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206711"
     misc_feature    1352..1354
                     /gene="DIRAS3"
                     /note="G2 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    1418..1429
                     /gene="DIRAS3"
                     /note="G3 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(1424..1465,1469..1480)
                     /gene="DIRAS3"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206711"
     misc_feature    1601..1612
                     /gene="DIRAS3"
                     /note="G4 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    1688..1696
                     /gene="DIRAS3"
                     /note="G5 box; other site"
                     /db_xref="CDD:206711"
ORIGIN      
        1 caaattttgt ggcttaaaac gactcccaac cgcagaaccc acaattctgt aagtcggaag
       61 tctggatggg ctccactgga ttctctgctt aattaaggct aaaatcaaag tgttggcggt
      121 ctgatcttat gcgcagtttg cagagaagaa tccgctttca agttcattta ggttgttggg
      181 aaaatctggt tgctagcgct gcggtccgtg ttttcttatt ggctgtcagc caggggtcgc
      241 tctctgctcc tagaaggctg cccacattcc agtctcgatt ctcttgtgag gattttttga
      301 cgatgactaa atgagacgta ttgtacacat agtgatgatg gatgtgatag ctgcttaatg
      361 tcgctgggtg tagaggatac ccctcaaccc ttaaacacag cacatgtcta tacaacagga
      421 aatcctaccg ggggcaggtt ctgaagtctc ttgtaacaga agagacttct gttggtcttc
      481 ccctacaaag acagaaactg ggttttgcgc tggacaaatg tttactaagt gaagtggatg
      541 agatgcggtg aagtgtctgg caccagtagt gggaagaatt ctaactggcc attccacagt
      601 gataagaagg tggcgaggct tgggaaaggc taaccccgca gggggcaaaa gcacagaagt
      661 ggtgaggaat gcagtaggtg agaaatgcct gcatcgccag cgctgtaagc agagccccct
      721 caatgggcgg gcacctgtga actcaggacc gcctcccacc cccgcccccg tccgggctgt
      781 gagtacccgt gtgggggacg ccggggggac tgcgtggggg gtgcgtctgg gctcggtcag
      841 cccctcatag cccaatcccc cctccgtgag ccatgcaagt ggagtctccc agtctgcgcc
      901 ccctggctct ggctaaccag cctcagtccc cccgttggag catttcgccc cgagcttccg
      961 agcgcactgg ttgccagctg cagctcggag cttggttacg caattacttg ccgccgctgt
     1021 gaccgcggcc aaagcccaca ccggcaagga gtgaatttgc cgcgaggttc ccgcctcgga
     1081 aagaggcttc cctcactgct ggccaagtgc cagagaaggt gtgcacgcat ctccccgcca
     1141 aaacccaacc atgggcaact cctgctttgg cctcaaggaa cggctgatga agcggctgcg
     1201 gcctctgcct accgtgatcg tcatccgtac ctgcctgccc cagaggagga gcagagattt
     1261 ccgcgtggtg gtgctcggct cggccggcgt gggcaagagc gcgctggtgc agaggtgggt
     1321 gcgcggcaac ttccgtgagg cgtacctgcc gaccatcgaa gatacctacc gccaggcgct
     1381 gggctgcagc cacaaggcgg gcgcactgca catcaccgac accaccggcg gccgccgcta
     1441 ccggggcctg cagcgcctcg ccattgccag gggtcacgcc ttcatcctgg tctactccgt
     1501 caccaagaag caaaccctgg aggagctgaa gcccctctat gagctgatcc gtcaactcaa
     1561 aggcaacaac ccgcaaaagt gccccatcat cctggtgggc aacaagtgcg atgagagccc
     1621 ccgggaggtg agcgagaagg aaggtgctgc ctacgcgtcg gagtggaatt gcgccttctt
     1681 ggagacctcc gccaagatga atatcaatgt gcaggagctg ttccagatgc tgataaactt
     1741 cgagaagaag cccgccgccg ctgccggcgc ccagcctccc cagaagaaat cccagatccc
     1801 caagaccgcc gagaagctgc tgggcaagtg catcatcatg tgaaccctga gccttaagga
     1861 gcccgaccct cttctccttc agtgtgctga aaacatggac caaccccatt gtgctgtgtc
     1921 acctgtacac gactgacttt tgtgctgtgg tttgggttgt aacaattaga tgtcaataaa
     1981 tgtcccttgt gagttagtaa cttttctttt ccccaggcaa gagaactcga attgttaaaa
     2041 tatggacatt ggaggaggag aggaaaaagg aacaggatgc attttaaagg atgggacttg
     2101 gacggacttt agagattaat gtttaaaaaa gagaatggaa atagcaaaat gaattgaaag
     2161 atgtcactgc ccttcttgta atcctattat tgtgtattat tcttaaacat ttcgagtcct
     2221 gtaaatgtct gatcatatct tcccattgtg tatttaattg ttaagagaca tgtttttgca
     2281 acaaaatctc tgacagatga ctgtgagaca gatactaaac atcataaata aatgaacgtt
     2341 ctatagttga gcattgaggg tgggagcaga gaaaattgtg atagtggaac ttgcttacta
     2401 aatatatacc aattgtttcc taagtcattt aaaaatgttt gagtattcta cactgcagtt
     2461 taaaaaaatt gtaatggttc cgtgacttaa taaagctttt cctgcatgca a
//
LOCUS       XM_032615193            1496 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DIRAS family GTPase 3 (DIRAS3),
            transcript variant X2, mRNA.
ACCESSION   XM_032615193
VERSION     XM_032615193.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1496
                     /gene="DIRAS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744997"
     CDS             136..828
                     /gene="DIRAS3"
                     /codon_start=1
                     /product="GTP-binding protein Di-Ras3"
                     /protein_id="XP_032471084.1"
                     /db_xref="GeneID:116744997"
                     /translation="MGNSCFGLKERLMKRLRPLPTVIVIRTCLPQRRSRDFRVVVLGS
                     AGVGKSALVQRWVRGNFREAYLPTIEDTYRQALGCSHKAGALHITDTTGGRRYRGLQR
                     LAIARGHAFILVYSVTKKQTLEELKPLYELIRQLKGNNPQKCPIILVGNKCDESPREV
                     SEKEGAAYASEWNCAFLETSAKMNINVQELFQMLINFEKKPAAAAGAQPPQKKSQIPK
                     TAEKLLGKCIIM"
     misc_feature    241..732
                     /gene="DIRAS3"
                     /note="A Ras homolog member I (ARHI); Region: ARHI_like;
                     cd04140"
                     /db_xref="CDD:206711"
     misc_feature    262..285
                     /gene="DIRAS3"
                     /note="G1 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(265..270,409..414)
                     /gene="DIRAS3"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(271..288,316..324,328..330,337..339,586..591,
                     595..600,673..681)
                     /gene="DIRAS3"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206711"
     misc_feature    order(283..288,328..330,334..336,352..357,394..399,
                     403..405,409..414,679..681)
                     /gene="DIRAS3"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(331..336,346..357)
                     /gene="DIRAS3"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206711"
     misc_feature    331..354
                     /gene="DIRAS3"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206711"
     misc_feature    337..339
                     /gene="DIRAS3"
                     /note="G2 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    403..414
                     /gene="DIRAS3"
                     /note="G3 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(409..450,454..465)
                     /gene="DIRAS3"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206711"
     misc_feature    586..597
                     /gene="DIRAS3"
                     /note="G4 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    673..681
                     /gene="DIRAS3"
                     /note="G5 box; other site"
                     /db_xref="CDD:206711"
ORIGIN      
        1 ggttatcgtg ggggtggaaa ccggtgggtg cgttgtcagg gaagcgggta cctggggaca
       61 gttgctgcag gcttccctca ctgctggcca agtgccagag aaggtgtgca cgcatctccc
      121 cgccaaaacc caaccatggg caactcctgc tttggcctca aggaacggct gatgaagcgg
      181 ctgcggcctc tgcctaccgt gatcgtcatc cgtacctgcc tgccccagag gaggagcaga
      241 gatttccgcg tggtggtgct cggctcggcc ggcgtgggca agagcgcgct ggtgcagagg
      301 tgggtgcgcg gcaacttccg tgaggcgtac ctgccgacca tcgaagatac ctaccgccag
      361 gcgctgggct gcagccacaa ggcgggcgca ctgcacatca ccgacaccac cggcggccgc
      421 cgctaccggg gcctgcagcg cctcgccatt gccaggggtc acgccttcat cctggtctac
      481 tccgtcacca agaagcaaac cctggaggag ctgaagcccc tctatgagct gatccgtcaa
      541 ctcaaaggca acaacccgca aaagtgcccc atcatcctgg tgggcaacaa gtgcgatgag
      601 agcccccggg aggtgagcga gaaggaaggt gctgcctacg cgtcggagtg gaattgcgcc
      661 ttcttggaga cctccgccaa gatgaatatc aatgtgcagg agctgttcca gatgctgata
      721 aacttcgaga agaagcccgc cgccgctgcc ggcgcccagc ctccccagaa gaaatcccag
      781 atccccaaga ccgccgagaa gctgctgggc aagtgcatca tcatgtgaac cctgagcctt
      841 aaggagcccg accctcttct ccttcagtgt gctgaaaaca tggaccaacc ccattgtgct
      901 gtgtcacctg tacacgactg acttttgtgc tgtggtttgg gttgtaacaa ttagatgtca
      961 ataaatgtcc cttgtgagtt agtaactttt cttttcccca ggcaagagaa ctcgaattgt
     1021 taaaatatgg acattggagg aggagaggaa aaaggaacag gatgcatttt aaaggatggg
     1081 acttggacgg actttagaga ttaatgttta aaaaagagaa tggaaatagc aaaatgaatt
     1141 gaaagatgtc actgcccttc ttgtaatcct attattgtgt attattctta aacatttcga
     1201 gtcctgtaaa tgtctgatca tatcttccca ttgtgtattt aattgttaag agacatgttt
     1261 ttgcaacaaa atctctgaca gatgactgtg agacagatac taaacatcat aaataaatga
     1321 acgttctata gttgagcatt gagggtggga gcagagaaaa ttgtgatagt ggaacttgct
     1381 tactaaatat ataccaattg tttcctaagt catttaaaaa tgtttgagta ttctacactg
     1441 cagtttaaaa aaattgtaat ggttccgtga cttaataaag cttttcctgc atgcaa
//
LOCUS       XM_032615203            1531 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DIRAS family GTPase 3 (DIRAS3),
            transcript variant X3, mRNA.
ACCESSION   XM_032615203
VERSION     XM_032615203.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1531
                     /gene="DIRAS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116744997"
     CDS             171..863
                     /gene="DIRAS3"
                     /codon_start=1
                     /product="GTP-binding protein Di-Ras3"
                     /protein_id="XP_032471094.1"
                     /db_xref="GeneID:116744997"
                     /translation="MGNSCFGLKERLMKRLRPLPTVIVIRTCLPQRRSRDFRVVVLGS
                     AGVGKSALVQRWVRGNFREAYLPTIEDTYRQALGCSHKAGALHITDTTGGRRYRGLQR
                     LAIARGHAFILVYSVTKKQTLEELKPLYELIRQLKGNNPQKCPIILVGNKCDESPREV
                     SEKEGAAYASEWNCAFLETSAKMNINVQELFQMLINFEKKPAAAAGAQPPQKKSQIPK
                     TAEKLLGKCIIM"
     misc_feature    276..767
                     /gene="DIRAS3"
                     /note="A Ras homolog member I (ARHI); Region: ARHI_like;
                     cd04140"
                     /db_xref="CDD:206711"
     misc_feature    297..320
                     /gene="DIRAS3"
                     /note="G1 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(300..305,444..449)
                     /gene="DIRAS3"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(306..323,351..359,363..365,372..374,621..626,
                     630..635,708..716)
                     /gene="DIRAS3"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206711"
     misc_feature    order(318..323,363..365,369..371,387..392,429..434,
                     438..440,444..449,714..716)
                     /gene="DIRAS3"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(366..371,381..392)
                     /gene="DIRAS3"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206711"
     misc_feature    366..389
                     /gene="DIRAS3"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206711"
     misc_feature    372..374
                     /gene="DIRAS3"
                     /note="G2 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    438..449
                     /gene="DIRAS3"
                     /note="G3 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(444..485,489..500)
                     /gene="DIRAS3"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206711"
     misc_feature    621..632
                     /gene="DIRAS3"
                     /note="G4 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    708..716
                     /gene="DIRAS3"
                     /note="G5 box; other site"
                     /db_xref="CDD:206711"
ORIGIN      
        1 cgtaaccttt ctgtccacct ggaactcagt tgcatgctgc cagctaatag aatgaaggcc
       61 gggaatggag tccagctgtg gacctaggaa gaagagatgg ctttggcttc cctcactgct
      121 ggccaagtgc cagagaaggt gtgcacgcat ctccccgcca aaacccaacc atgggcaact
      181 cctgctttgg cctcaaggaa cggctgatga agcggctgcg gcctctgcct accgtgatcg
      241 tcatccgtac ctgcctgccc cagaggagga gcagagattt ccgcgtggtg gtgctcggct
      301 cggccggcgt gggcaagagc gcgctggtgc agaggtgggt gcgcggcaac ttccgtgagg
      361 cgtacctgcc gaccatcgaa gatacctacc gccaggcgct gggctgcagc cacaaggcgg
      421 gcgcactgca catcaccgac accaccggcg gccgccgcta ccggggcctg cagcgcctcg
      481 ccattgccag gggtcacgcc ttcatcctgg tctactccgt caccaagaag caaaccctgg
      541 aggagctgaa gcccctctat gagctgatcc gtcaactcaa aggcaacaac ccgcaaaagt
      601 gccccatcat cctggtgggc aacaagtgcg atgagagccc ccgggaggtg agcgagaagg
      661 aaggtgctgc ctacgcgtcg gagtggaatt gcgccttctt ggagacctcc gccaagatga
      721 atatcaatgt gcaggagctg ttccagatgc tgataaactt cgagaagaag cccgccgccg
      781 ctgccggcgc ccagcctccc cagaagaaat cccagatccc caagaccgcc gagaagctgc
      841 tgggcaagtg catcatcatg tgaaccctga gccttaagga gcccgaccct cttctccttc
      901 agtgtgctga aaacatggac caaccccatt gtgctgtgtc acctgtacac gactgacttt
      961 tgtgctgtgg tttgggttgt aacaattaga tgtcaataaa tgtcccttgt gagttagtaa
     1021 cttttctttt ccccaggcaa gagaactcga attgttaaaa tatggacatt ggaggaggag
     1081 aggaaaaagg aacaggatgc attttaaagg atgggacttg gacggacttt agagattaat
     1141 gtttaaaaaa gagaatggaa atagcaaaat gaattgaaag atgtcactgc ccttcttgta
     1201 atcctattat tgtgtattat tcttaaacat ttcgagtcct gtaaatgtct gatcatatct
     1261 tcccattgtg tatttaattg ttaagagaca tgtttttgca acaaaatctc tgacagatga
     1321 ctgtgagaca gatactaaac atcataaata aatgaacgtt ctatagttga gcattgaggg
     1381 tgggagcaga gaaaattgtg atagtggaac ttgcttacta aatatatacc aattgtttcc
     1441 taagtcattt aaaaatgttt gagtattcta cactgcagtt taaaaaaatt gtaatggttc
     1501 cgtgacttaa taaagctttt cctgcatgca a
//
LOCUS       XM_032615213            1476 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DIRAS family GTPase 3 (DIRAS3),
            transcript variant X4, mRNA.
ACCESSION   XM_032615213
VERSION     XM_032615213.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1476
                     /gene="DIRAS3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116744997"
     CDS             116..808
                     /gene="DIRAS3"
                     /codon_start=1
                     /product="GTP-binding protein Di-Ras3"
                     /protein_id="XP_032471104.1"
                     /db_xref="GeneID:116744997"
                     /translation="MGNSCFGLKERLMKRLRPLPTVIVIRTCLPQRRSRDFRVVVLGS
                     AGVGKSALVQRWVRGNFREAYLPTIEDTYRQALGCSHKAGALHITDTTGGRRYRGLQR
                     LAIARGHAFILVYSVTKKQTLEELKPLYELIRQLKGNNPQKCPIILVGNKCDESPREV
                     SEKEGAAYASEWNCAFLETSAKMNINVQELFQMLINFEKKPAAAAGAQPPQKKSQIPK
                     TAEKLLGKCIIM"
     misc_feature    221..712
                     /gene="DIRAS3"
                     /note="A Ras homolog member I (ARHI); Region: ARHI_like;
                     cd04140"
                     /db_xref="CDD:206711"
     misc_feature    242..265
                     /gene="DIRAS3"
                     /note="G1 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(245..250,389..394)
                     /gene="DIRAS3"
                     /note="putative GDI interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(251..268,296..304,308..310,317..319,566..571,
                     575..580,653..661)
                     /gene="DIRAS3"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206711"
     misc_feature    order(263..268,308..310,314..316,332..337,374..379,
                     383..385,389..394,659..661)
                     /gene="DIRAS3"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(311..316,326..337)
                     /gene="DIRAS3"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206711"
     misc_feature    311..334
                     /gene="DIRAS3"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206711"
     misc_feature    317..319
                     /gene="DIRAS3"
                     /note="G2 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    383..394
                     /gene="DIRAS3"
                     /note="G3 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    order(389..430,434..445)
                     /gene="DIRAS3"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206711"
     misc_feature    566..577
                     /gene="DIRAS3"
                     /note="G4 box; other site"
                     /db_xref="CDD:206711"
     misc_feature    653..661
                     /gene="DIRAS3"
                     /note="G5 box; other site"
                     /db_xref="CDD:206711"
ORIGIN      
        1 tggatttcct tggaattatc ctggtggggt ttgctcagct tcttggaact gcttccctca
       61 ctgctggcca agtgccagag aaggtgtgca cgcatctccc cgccaaaacc caaccatggg
      121 caactcctgc tttggcctca aggaacggct gatgaagcgg ctgcggcctc tgcctaccgt
      181 gatcgtcatc cgtacctgcc tgccccagag gaggagcaga gatttccgcg tggtggtgct
      241 cggctcggcc ggcgtgggca agagcgcgct ggtgcagagg tgggtgcgcg gcaacttccg
      301 tgaggcgtac ctgccgacca tcgaagatac ctaccgccag gcgctgggct gcagccacaa
      361 ggcgggcgca ctgcacatca ccgacaccac cggcggccgc cgctaccggg gcctgcagcg
      421 cctcgccatt gccaggggtc acgccttcat cctggtctac tccgtcacca agaagcaaac
      481 cctggaggag ctgaagcccc tctatgagct gatccgtcaa ctcaaaggca acaacccgca
      541 aaagtgcccc atcatcctgg tgggcaacaa gtgcgatgag agcccccggg aggtgagcga
      601 gaaggaaggt gctgcctacg cgtcggagtg gaattgcgcc ttcttggaga cctccgccaa
      661 gatgaatatc aatgtgcagg agctgttcca gatgctgata aacttcgaga agaagcccgc
      721 cgccgctgcc ggcgcccagc ctccccagaa gaaatcccag atccccaaga ccgccgagaa
      781 gctgctgggc aagtgcatca tcatgtgaac cctgagcctt aaggagcccg accctcttct
      841 ccttcagtgt gctgaaaaca tggaccaacc ccattgtgct gtgtcacctg tacacgactg
      901 acttttgtgc tgtggtttgg gttgtaacaa ttagatgtca ataaatgtcc cttgtgagtt
      961 agtaactttt cttttcccca ggcaagagaa ctcgaattgt taaaatatgg acattggagg
     1021 aggagaggaa aaaggaacag gatgcatttt aaaggatggg acttggacgg actttagaga
     1081 ttaatgttta aaaaagagaa tggaaatagc aaaatgaatt gaaagatgtc actgcccttc
     1141 ttgtaatcct attattgtgt attattctta aacatttcga gtcctgtaaa tgtctgatca
     1201 tatcttccca ttgtgtattt aattgttaag agacatgttt ttgcaacaaa atctctgaca
     1261 gatgactgtg agacagatac taaacatcat aaataaatga acgttctata gttgagcatt
     1321 gagggtggga gcagagaaaa ttgtgatagt ggaacttgct tactaaatat ataccaattg
     1381 tttcctaagt catttaaaaa tgtttgagta ttctacactg cagtttaaaa aaattgtaat
     1441 ggttccgtga cttaataaag cttttcctgc atgcaa
//
LOCUS       XM_032615227            1878 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cullin-4B-like (LOC116745007), mRNA.
ACCESSION   XM_032615227
VERSION     XM_032615227.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-94                VOSU01000011.1     39919599-39919692   c
            95-907              VOSU01000011.1     39918656-39919468   c
            908-981             VOSU01000011.1     39918393-39918466   c
            982-982             "N"                1-1
            983-1674            VOSU01000011.1     39917701-39918392   c
            1675-1675           "N"                1-1
            1676-1878           VOSU01000011.1     39917498-39917700   c
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1878
                     /gene="LOC116745007"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 Proteins, and 41% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116745007"
     CDS             16..1878
                     /gene="LOC116745007"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: cullin-4B-like"
                     /protein_id="XP_032471118.1"
                     /db_xref="GeneID:116745007"
                     /translation="MIMISSSFLFLDRTYVLQNSMLPGFPACAPQRERPQQWEARVLQ
                     KKKKKNSMLPSIWKRNSEAIDRSLLRSLLSMLSDLQIYQDYFEQRFLEGTNRFYAAEG
                     QKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTEILQK
                     DLNKLLDKNRIQDLSHLYQLFSKVRGGIQVLLQQWIEYIKAFGSTIVVNPEKDKTMVQ
                     ELLAFKDKVDHIIDICFLKNEKHINAMKEAFETFINKRPNKPAELIAKYADSKLLAGN
                     KEATDEELEKMLDKIIIFIYFSPMIIFRFIYGKDVFEAFYKKDLAKXPVGKSASVDAE
                     KSMLSKLKHECGAAFTSKLEGTFKDVELSKDIMIQFKQYMQNQNVPGNIELTVNILTV
                     GHWPTYVPMEVHLPPEMVKFPEIFKTFYLGKHSGRKPQWQSTLGRCVLKAEFKEGKME
                     LQFSLFQTPVLLMFNEGEELSLEEIRQATGIEAGELGRTLQSLACGKARVLMTNPKGK
                     AIEDGDKFICNDDFKHRLFRIKVNQIQMKEMVEELASTTERVYRDXYEMDAAIVQIMK
                     IRKTLSHNLLVSEVYNQLKFPVKPADLKKRRESLTDLDYMERDKENPNQYNYIA"
     misc_feature    16..1581
                     /gene="LOC116745007"
                     /note="Cullin family; Region: Cullin; pfam00888"
                     /db_xref="CDD:459983"
     misc_feature    1678..1857
                     /gene="LOC116745007"
                     /note="Cullin protein neddylation domain; Region:
                     Cullin_Nedd8; smart00884"
                     /db_xref="CDD:214883"
ORIGIN      
        1 aaccattgca gacaaatgat catgatcagt agcagttttt tgtttctgga taggacttac
       61 gttcttcaaa attcaatgct gccgggcttc cctgcctgtg ctccgcaacg ggagaggcca
      121 cagcagtggg aggcccgcgt actgcaaaaa aaaaaaaaaa aaaattcaat gctaccttcc
      181 atttggaaaa ggaatagtga agcaattgat agaagtttac tccgaagcct tttaagcatg
      241 ctctctgatt tgcaaattta tcaggattat tttgaacaac gatttttgga aggaactaac
      301 cgattctacg cagctgaagg ccaaaaatta atgcaggaaa gagaggttcc tgaatatctt
      361 catcatgtta acaaacgtct agaagaagaa gcagatagac ttattactta cttagatcag
      421 accacccaaa agtcattaat tgctactgtg gaaaaacaac ttctaggtga acacttaaca
      481 gagattcttc agaaagattt aaataaactc cttgataaaa accgaattca agatttatct
      541 cacctgtatc agctcttcag taaagttcga ggtggcattc aggttctctt gcagcaatgg
      601 attgaataca ttaaggcatt tggtagcact attgtagtta atcctgaaaa ggataaaacc
      661 atggttcaag aattgctggc ttttaaagat aaggttgacc atataattga tatctgtttc
      721 ctgaagaatg aaaaacatat caatgccatg aaagaagcat ttgaaacatt cattaacaaa
      781 agaccaaaca aacctgctga acttatagct aagtatgcag attcaaagct tctcgcaggc
      841 aacaaagaag ctacagatga agaacttgag aaaatgttgg ataagattat tatatttatt
      901 tatttttccc ctatgattat atttagattc atctatggca aggatgtttt tgaggccttc
      961 tataagaaag atttagccaa gntgcctgtt gggaagagtg catctgtgga tgctgaaaaa
     1021 tcaatgctgt ccaaacttaa acatgaatgt ggagctgctt tcaccagcaa acttgaagga
     1081 acgtttaaag acgtggaact ttctaaagac atcatgattc aattcaaaca gtatatgcag
     1141 aaccagaatg tacctgggaa tattgaatta actgtgaata tcctgacggt gggtcattgg
     1201 ccaacatatg tgcctatgga agttcattta ccaccagaga tggtaaaatt tccagagatt
     1261 ttcaagacct tttacctagg caaacatagt ggcaggaaac ctcagtggca gtcaacccta
     1321 ggacgctgtg tgctaaaggc agaatttaaa gagggtaaaa tggaactcca gttctctctt
     1381 tttcaaacac cggtgctgct gatgttcaat gagggagagg agttaagttt ggaagagatc
     1441 aggcaggcta cgggaataga ggctggagag ttagggagaa ccctgcagtc attggcctgt
     1501 ggcaaagcta gagttctgat gacaaatcca aagggtaaag ctatagaaga tggtgacaag
     1561 ttcatttgta atgacgattt caagcacaga cttttcagga taaaggtcaa tcaaattcag
     1621 atgaaagaaa tggttgagga actagcaagc actacagaaa gagtatatcg ggacnagtat
     1681 gaaatggatg ctgcaattgt tcaaattatg aagataagaa agacacttag ccacaatctt
     1741 cttgtttcgg aagtgtacaa ccagttgaaa tttcccgtaa agcctgctga tcttaagaag
     1801 agaagagaat ccttaactga cctggactac atggaaagag ataaagaaaa tccaaaccag
     1861 tacaactata ttgcataa
//
LOCUS       XM_032615241            2179 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA.
ACCESSION   XM_032615241
VERSION     XM_032615241.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2179
                     /gene="ST6GALNAC5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116745010"
     CDS             283..1248
                     /gene="ST6GALNAC5"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 5"
                     /protein_id="XP_032471132.1"
                     /db_xref="GeneID:116745010"
                     /translation="MKTLVRHGLAVCLALTTMCTSLLLAYSSLGGQKERPPQQQQEAA
                     ATGSPPPHPEAPAGPRPLDGYLGVADHKPLKMHCRDCALVTSSGHLLRSLRGPQIDQT
                     ECVIRMNDAPTRGYGHDVGNRTSLRVIAHSSLQRILRNRHDLLNVSQGTVFIFWGPSS
                     YMRRDGKGQVYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLST
                     GWFTMTIALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPLGPDECTMYLSHERGRK
                     GSHHRFITEKRVFKNWAQTFNIHFFQPDWKPESLAISHPENKPVF"
     misc_feature    472..1203
                     /gene="ST6GALNAC5"
                     /note="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 5; Region: GT29_ST6GALNAC5;
                     cd23976"
                     /db_xref="CDD:467704"
     misc_feature    order(535..543,604..609,670..672,931..939,991..996,
                     1039..1047,1120..1122)
                     /gene="ST6GALNAC5"
                     /note="putative active site [active]"
                     /db_xref="CDD:467704"
ORIGIN      
        1 gggcgggaag gggggaatgc agagggcttt aggacccggc aggcggcagt tgtgtagatc
       61 gctgagagac tacgagggtc cggttcagct tcaattctgt ctctaatctc tgcaacagcg
      121 gctcttcctg ggtcccgcgg ctttcctgct cactcagccg cggctggagg cccggcgaaa
      181 atcagagccg tttccgcccc atcaccgacg atggaaatcc tccaagaaaa agtggccccg
      241 gacgcgtgtg cctgaggatt ccgcacaaaa gaggtgccca aaatgaagac cctggtgcgc
      301 catggtctgg cagtgtgttt agcgctcacc accatgtgca ccagcttgtt gctcgcgtac
      361 agcagcctag gcggccagaa ggagcggccc ccgcagcagc agcaggaggc agcggctacc
      421 ggcagccccc cgccgcaccc cgaggccccc gcgggaccgc ggccactgga cggatacctt
      481 ggcgtggcgg accacaagcc cctgaaaatg cactgcaggg actgcgccct ggtgacgagc
      541 tcggggcatc tcttgcgtag cctgcgaggc ccccagattg accagaccga gtgcgtcatc
      601 cgcatgaacg acgcccctac gcgcggctac gggcacgacg ttggcaatcg caccagcctg
      661 agggtcatcg cgcattccag cctccagcga atcctccgca accgccacga cctgctcaac
      721 gtcagccagg gcaccgtgtt catcttctgg ggccccagca gctacatgcg gcgcgacggc
      781 aagggccagg tctacaacaa cctgcagctc ctgagccagg tgctgccccg gctgaaggcc
      841 ttcatgatca cgcgccacaa gatgctgcag tttgatgagc tcttcaagcg cgagaccggc
      901 aaagacagga agatctccaa cacttggctc agcactggct ggttcacaat gacgattgcc
      961 ctggagctct gtgacaggat caatgtttat ggcatggtgc ccccagactt ctgcagggat
     1021 cccaatcacc cttcagtacc ttatcactat tacgaacctc ttggacctga tgaatgtacg
     1081 atgtacctct cccacgagcg aggacggaag ggaagtcatc accgctttat cacagagaaa
     1141 cgagtcttta agaactgggc acagacattc aatattcact tttttcaacc agactggaaa
     1201 ccggaatcac ttgctataag tcatcctgag aataaacctg tgttctgagg aatgtgtgtg
     1261 gccagatgga tatcccaaga acccactgta tcagacatca ggccactgaa cttcttgaaa
     1321 caccagacat gaaagaggaa cagaatgggt cgccggggta gcttcagttc tcaagaagta
     1381 ccatgtacag gtgcctccga ggcgtgacta cacagcagtg cagttggttt gtaagggaaa
     1441 attccagaat gaatacatcc taatgcgtgt cgtccctttc aaaaggggtt accgtagggg
     1501 ctgaactctc atttaaatga tattgccacg gctaaaaaca ttttggatct ctttaagtat
     1561 tgccttcgaa actgagacat taggaactca acattaattg tattcctttg tagaaatacc
     1621 acatcaaaag tcatttttct atcaaattgt atcctaacct gaacctttgc cgtttgttgg
     1681 actctgtatg tgtgatttgt ataaagcagc ctgaaagtac ggacatgatt tctgaagagt
     1741 atatcttcac tgactttcat aagcaaatgc ccaatattta tttattgaga gttttttagt
     1801 gtgttctcgg ccagtatttt tatagattat gattatgtgg taatttatcc ttcctaattc
     1861 tttagtcctg agtgatggtt ggaaaaggcc cagaactggg agatgagttg cggtgttccc
     1921 aatgctcatg gttagcatgc gacgatattt ggcttggaaa tgttacattg cattttttga
     1981 accctcagtc ttcaagaaca gctatgacat tttccaatat gcagaaatgc tccaaatgac
     2041 aacattgaaa accaaaaact gcgacgttca aacaaaaaag ataccaacaa gagaaactta
     2101 aagacagttt gctttagtaa taattgatgt aggttacttc actaaagccc tagtttcctc
     2161 ttctgcagaa tgatgtcac
//
LOCUS       XM_032615253            4556 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SMG5 nonsense mediated mRNA decay factor
            (SMG5), transcript variant X1, mRNA.
ACCESSION   XM_032615253
VERSION     XM_032615253.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4556
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4556
                     /gene="SMG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 8 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116745017"
     CDS             150..3200
                     /gene="SMG5"
                     /codon_start=1
                     /product="protein SMG5 isoform X1"
                     /protein_id="XP_032471144.1"
                     /db_xref="GeneID:116745017"
                     /translation="MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAY
                     QEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIH
                     SRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSAS
                     GKEMDWAQMACHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQL
                     GTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSP
                     SKKRCKDIKRLLVNFMYLQSLLQPKSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLS
                     LASEDEEEYESGYAFLPDLLIFQMVIICLMGVHSLKRAGSKQYSAAIAFTLALFSHLV
                     NHVNIRLQAELEEGENPVPAFQSDGTDEPESKEPLEKVEEPGPEPPPAASQDGEVRKS
                     RKFSRLSCLRRRRHPPKAGDDSDLSEGFDSDSSHDSARASEGSDSGSDKSLEGGGTAF
                     DAETDSEMNSQESRSDLEDMEDEEGTRSPALEPPRARSEAPESLNGPLGPSEASIASN
                     LQAMSTQMFQTKRCFRLAPTFSNLLLQPATEAPTLASRRPCVNGDVDKPSEPASEEGS
                     ESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSL
                     WNRLSVLLNLLPAAGELQESGLVLCPEVQDLLEGCELPDLPSSLLLPEDMALRNLPPL
                     RAAHRRFNFDTDRLLLSTSEETVVRVCCIRSFGHFVARLQGSILQFNPEVGIFVSIAQ
                     SEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPY
                     LVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFK
                     KGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTI
                     ITGLPLDNPSTLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG"
     misc_feature    378..713
                     /gene="SMG5"
                     /note="Telomerase activating protein Est1; Region: EST1;
                     pfam10374"
                     /db_xref="CDD:463062"
     misc_feature    738..>1379
                     /gene="SMG5"
                     /note="Est1 DNA/RNA binding domain; Region: EST1_DNA_bind;
                     pfam10373"
                     /db_xref="CDD:431239"
     misc_feature    2712..3188
                     /gene="SMG5"
                     /note="VapC-like PIN domain of human nonsense-mediated
                     decay factor Smg5, and other similar eukaryotic homologs;
                     Region: PIN_Smg5-like; cd09884"
                     /db_xref="CDD:350232"
     misc_feature    2727..2729
                     /gene="SMG5"
                     /note="conserved Asp residue; other site"
                     /db_xref="CDD:350232"
ORIGIN      
        1 agctgtcgcg ggcagctgcc tcgcagctat ggcggccgag cagggccggc ggcggtggtg
       61 gctgcggcta cggtcggaga cggcagtggt ggcggtagcg gtaggtggcg ggggtctgtg
      121 accgggatcc gcccccgggc ccgggcacca tgagccaagg cccccccaca ggggagagca
      181 gcgagcccga agcaaaggtc ctccacacta agcggcttta ccgggccgtg gtggaggctg
      241 tgcatcgact tgacctcatc ctttgcaaca aaactgctta tcaagaagtg ttcaaaccag
      301 agaacattag cctgaggaac aagctgcgtg agctctgcgt caagcttatg ttcctgcacc
      361 cggtggacta tgggaggaag gcagaggagc tgctgtggag aaaggtgtac tacgaagtta
      421 tccagcttat caagactaac aaaaagcata tccacagccg gagcaccttg gaatgtgcct
      481 acaggacaca cctggtcgct ggtattggct tctaccagca tctccttctt tatatccagt
      541 cccactacca gctagaactg cagtgctgca tcgactggac ccatgtcacc gaccccctca
      601 taggatgcaa gaagccagtg tctgcctcag ggaaggagat ggattgggca cagatggcat
      661 gccaccgatg tctagtgtac ctgggggatt tgtcacgata tcagaatgaa ttagctggcg
      721 tagacactga gctgctagct gagagatttt actaccaagc cctgtcagtg gctccccaga
      781 ttggaatgcc cttcaaccag ctgggcacac ttgccggcag caagtactat aatgtggaag
      841 ccatgtattg ctacctgcgc tgcatccagt cggaagtgtc ctttgagggg gcctatggga
      901 acctcaagcg gctgtatgac aaggcagcca aaatgtacca ccagctgaag aagtgcgaga
      961 ctcggaagct ctctcccagt aagaagcgat gtaaagacat taagaggttg ctggtgaact
     1021 ttatgtatct gcaaagcctc ctgcagccca aaagcagctc tgtggactca gagctgacat
     1081 cactttgcca gtcagtcctg gaggacttca acctctgtct cttctacctg ccctcctcac
     1141 ccaacctcag cctggccagt gaggatgagg aggagtatga gagtggatat gctttcctcc
     1201 cggaccttct catctttcag atggtcatca tctgccttat gggtgtgcac agcttgaaga
     1261 gagcagggtc caagcagtac agtgcggcca ttgccttcac cctggctctc ttctcccacc
     1321 tcgtcaatca tgtcaacata cggctgcaag ctgagctgga agagggcgag aatcccgtcc
     1381 cggcgttcca gagtgatggc acagatgaac cagagtccaa ggaacccttg gagaaggtgg
     1441 aggagccggg tcctgagcct cctcctgcag catctcaaga tggcgaggtc agaaagagcc
     1501 ggaagttctc ccgcctctcc tgcctccgcc gccggcgcca cccacccaaa gctggtgatg
     1561 acagtgacct gagtgaaggc tttgactcag actcgagcca tgactcagcc cgggccagtg
     1621 agggctcaga cagtggctcc gacaagagcc ttgaaggtgg gggaactgcc tttgatgccg
     1681 agacagattc agaaatgaac agccaagagt cccgatcaga cctggaagat atggaggacg
     1741 aggaagggac acggtcccca gccctggagc cacctcgggc caggtcagag gctcctgaat
     1801 ccctcaacgg cccactgggc cccagtgagg ccagcattgc cagcaatcta caagccatgt
     1861 ccacccagat gttccagact aaacgctgct tccgactggc ccccaccttc agcaacctgc
     1921 tcctccagcc cgccaccgaa gctcccacct tggccagccg caggccctgt gtcaatgggg
     1981 atgtggacaa gccctcagag ccagcctctg aagagggctc tgagtctgag ggaagtgagt
     2041 ctagtgggcg ctcctgtcgg aatgagcgca gcatccagga gaagctgcaa gtcctgatgg
     2101 ccgaaggcct gcttcctgct gtgaaagtct tcctggactg gctgcggact aaccccgacc
     2161 tcatcattgt gtgtgcgcag agctctcaaa gtctgtggaa ccgcctctct gtgttgctta
     2221 atctgttgcc agctgctggc gaactccaag agtctggcct ggtcctgtgt cctgaggtcc
     2281 aggatcttct tgaaggttgt gaactgcctg acctcccgtc tagcttgctg ctcccagagg
     2341 acatggcact tcgcaacctg cctcccctcc gggctgccca cagacgcttt aactttgaca
     2401 cggatcggct cttgctcagc acctcagagg agacggtcgt gcgcgtctgc tgcatccgca
     2461 gctttggcca cttcgttgcc cgcctgcaag gcagcatcct gcagttcaac ccagaggtcg
     2521 gcatcttcgt cagcatcgcc cagtctgagc aggagagcct gctgcagcag gcccaggccc
     2581 agttccgcat ggcacaggag gaagctcggc ggaacaggct aatgagagac atggcccagc
     2641 tacggcttca gctcgaggtc tctcagctgg aagggagcct gcagcagccc aaggcccagt
     2701 cagcaatgtc tccctacctc gtccccgaca cccaagccct ttgccaccac ctccctgtca
     2761 tccgccagct ggccaccagt ggccgcttca ttgtcatcat cccaaggaca gtgatcgatg
     2821 gcctggattt gctgaagaag gaacaccccg gggcccggga tgggatccga tacctggagg
     2881 cagagtttaa aaaagggaac aggtacattc gctgccagaa agaggtgggg aagagctttg
     2941 agcggcataa gctgaagagg caggatgcag atgcctggac gctctataag atcctggaca
     3001 gctgcaaaca gctgactctg gcccagggcg caggtgagga ggacccgagt ggcatggtga
     3061 ccatcatcac aggccttcca ctggacaacc ccagcacgct ctcaggccct atgcaggcag
     3121 ccttgcaggc cgctgcacat gccagtgtgg acatcaagaa tgttctggac ttctacaagc
     3181 agtggaagga gattggttga gaccgacccc caggccctgc agcggggctg actccagatc
     3241 tctcctgccc tccctggcag ccaggaccac cacctgtagt caccccacca cacgcagact
     3301 cacgcacgca cacaggaagg aagcccagct gcacacaggc tgcagggagg gcccaggagc
     3361 ggggtccccc tgttgccaag acgacgtcag gaaagcaagg aaagtgcttg gagcaggaga
     3421 ggcctgtggg cccctagcca gccttcctgc ctcagccccc ctgctttccc caggggcagg
     3481 tggcaggcac gggtgtctgc gtttcgttgg agtggttcct ggacctctga ggggaaggga
     3541 cagcagaagg ggcccttctt cctcacccaa gacgcagggt ggttggtgcc aggagtttgg
     3601 gccctctggg cctgggggta gagttgggta acaccaggtg tctgggtggt tctctgcaga
     3661 cccttcctct ccttgaggac cacccatccc cctcttatct ccctttgcag gggctgggca
     3721 gctctggagc cttggggact cttaaggaag aggggcctgg agctgcctgc accagtagca
     3781 gggcagggct tagatcccct cctcctgctg caggggatgc acacccattg ccccgcttct
     3841 gttttctgtc tcccttcgtc tagcctccag ggcagggagc aggcccacaa cggctgcagg
     3901 cagtccggcc tatacgccaa tgagggcttc tgtgcccgcc agccccatgg tcactgcgct
     3961 ttgtgctctg ggctgctgtg ctgggacaga gtgggatgcc ggtaagagga gagaggggtg
     4021 aagtttgagg ccacaacccc ccttactatc tagggagggg cctgtgtttg gatggacagc
     4081 agaaaggaga ggccccttga agctgcccgc ccagggaccc tctgccctga tgggcttccc
     4141 tacttttgtc cttccccggg actaaaggcc tggaggagct gagcatgggg ctagcttctg
     4201 gagtgttgag gtgaatgtga gagcagagat cacgaatagc tcagggcagt gagtggagca
     4261 gcaagagtgg ggctgagtgt gggaggcttt ggccaggatt gcctcggccc ctcccgctcg
     4321 ggctgcacat acagctcggg ctgggggttg agggttgggg atctcagctc tgctgttccc
     4381 caccccagca ctagcctagc ttcccagact gttctcggag gagaactggc tgcctgcctc
     4441 cttcctctaa gacagcaagt ctggtacaac ctggggggag tgggatcacc cccacttcca
     4501 gtccctggca gaggctgaga ctaaaagcat cacttaataa agacccccag aagccc
//
LOCUS       XM_032615262            4440 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SMG5 nonsense mediated mRNA decay factor
            (SMG5), transcript variant X2, mRNA.
ACCESSION   XM_032615262
VERSION     XM_032615262.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4440
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4440
                     /gene="SMG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116745017"
     CDS             230..3082
                     /gene="SMG5"
                     /codon_start=1
                     /product="protein SMG5 isoform X2"
                     /protein_id="XP_032471153.1"
                     /db_xref="GeneID:116745017"
                     /translation="MFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECA
                     YRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQ
                     MACHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKY
                     YNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRCKDI
                     KRLLVNFMYLQSLLQPKSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEE
                     YESGYAFLPDLLIFQMVIICLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNHVNIRLQ
                     AELEEGENPVPAFQSDGTDEPESKEPLEKVEEPGPEPPPAASQDGEVRKSRKFSRLSC
                     LRRRRHPPKAGDDSDLSEGFDSDSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEM
                     NSQESRSDLEDMEDEEGTRSPALEPPRARSEAPESLNGPLGPSEASIASNLQAMSTQM
                     FQTKRCFRLAPTFSNLLLQPATEAPTLASRRPCVNGDVDKPSEPASEEGSESEGSESS
                     GRSCRNERSIQEKLQVLMAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSLWNRLSVLL
                     NLLPAAGELQESGLVLCPEVQDLLEGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFN
                     FDTDRLLLSTSEETVVRVCCIRSFGHFVARLQGSILQFNPEVGIFVSIAQSEQESLLQ
                     QAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQAL
                     CHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRC
                     QKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIITGLPLDN
                     PSTLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG"
     misc_feature    260..595
                     /gene="SMG5"
                     /note="Telomerase activating protein Est1; Region: EST1;
                     pfam10374"
                     /db_xref="CDD:463062"
     misc_feature    545..649
                     /gene="SMG5"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    order(548..550,557..562,569..574,578..580,668..670,
                     677..682,689..694,698..703,770..772,779..784,791..796)
                     /gene="SMG5"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    620..>1261
                     /gene="SMG5"
                     /note="Est1 DNA/RNA binding domain; Region: EST1_DNA_bind;
                     pfam10373"
                     /db_xref="CDD:431239"
     misc_feature    662..754
                     /gene="SMG5"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    767..835
                     /gene="SMG5"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    2594..3070
                     /gene="SMG5"
                     /note="VapC-like PIN domain of human nonsense-mediated
                     decay factor Smg5, and other similar eukaryotic homologs;
                     Region: PIN_Smg5-like; cd09884"
                     /db_xref="CDD:350232"
     misc_feature    2609..2611
                     /gene="SMG5"
                     /note="conserved Asp residue; other site"
                     /db_xref="CDD:350232"
ORIGIN      
        1 ggaggagctg tcgcgggcag ctgcctcgca gctatggcgg ccgagcaggg ccggcggcgg
       61 tggtggctgc ggctacggtc ggagacggca gtggtggcgg tagcgggccg tggtggaggc
      121 tgtgcatcga cttgacctca tcctttgcaa caaaactgct tatcaagaag tgttcaaacc
      181 agagaacatt agcctgagga acaagctgcg tgagctctgc gtcaagctta tgttcctgca
      241 cccggtggac tatgggagga aggcagagga gctgctgtgg agaaaggtgt actacgaagt
      301 tatccagctt atcaagacta acaaaaagca tatccacagc cggagcacct tggaatgtgc
      361 ctacaggaca cacctggtcg ctggtattgg cttctaccag catctccttc tttatatcca
      421 gtcccactac cagctagaac tgcagtgctg catcgactgg acccatgtca ccgaccccct
      481 cataggatgc aagaagccag tgtctgcctc agggaaggag atggattggg cacagatggc
      541 atgccaccga tgtctagtgt acctggggga tttgtcacga tatcagaatg aattagctgg
      601 cgtagacact gagctgctag ctgagagatt ttactaccaa gccctgtcag tggctcccca
      661 gattggaatg cccttcaacc agctgggcac acttgccggc agcaagtact ataatgtgga
      721 agccatgtat tgctacctgc gctgcatcca gtcggaagtg tcctttgagg gggcctatgg
      781 gaacctcaag cggctgtatg acaaggcagc caaaatgtac caccagctga agaagtgcga
      841 gactcggaag ctctctccca gtaagaagcg atgtaaagac attaagaggt tgctggtgaa
      901 ctttatgtat ctgcaaagcc tcctgcagcc caaaagcagc tctgtggact cagagctgac
      961 atcactttgc cagtcagtcc tggaggactt caacctctgt ctcttctacc tgccctcctc
     1021 acccaacctc agcctggcca gtgaggatga ggaggagtat gagagtggat atgctttcct
     1081 cccggacctt ctcatctttc agatggtcat catctgcctt atgggtgtgc acagcttgaa
     1141 gagagcaggg tccaagcagt acagtgcggc cattgccttc accctggctc tcttctccca
     1201 cctcgtcaat catgtcaaca tacggctgca agctgagctg gaagagggcg agaatcccgt
     1261 cccggcgttc cagagtgatg gcacagatga accagagtcc aaggaaccct tggagaaggt
     1321 ggaggagccg ggtcctgagc ctcctcctgc agcatctcaa gatggcgagg tcagaaagag
     1381 ccggaagttc tcccgcctct cctgcctccg ccgccggcgc cacccaccca aagctggtga
     1441 tgacagtgac ctgagtgaag gctttgactc agactcgagc catgactcag cccgggccag
     1501 tgagggctca gacagtggct ccgacaagag ccttgaaggt gggggaactg cctttgatgc
     1561 cgagacagat tcagaaatga acagccaaga gtcccgatca gacctggaag atatggagga
     1621 cgaggaaggg acacggtccc cagccctgga gccacctcgg gccaggtcag aggctcctga
     1681 atccctcaac ggcccactgg gccccagtga ggccagcatt gccagcaatc tacaagccat
     1741 gtccacccag atgttccaga ctaaacgctg cttccgactg gcccccacct tcagcaacct
     1801 gctcctccag cccgccaccg aagctcccac cttggccagc cgcaggccct gtgtcaatgg
     1861 ggatgtggac aagccctcag agccagcctc tgaagagggc tctgagtctg agggaagtga
     1921 gtctagtggg cgctcctgtc ggaatgagcg cagcatccag gagaagctgc aagtcctgat
     1981 ggccgaaggc ctgcttcctg ctgtgaaagt cttcctggac tggctgcgga ctaaccccga
     2041 cctcatcatt gtgtgtgcgc agagctctca aagtctgtgg aaccgcctct ctgtgttgct
     2101 taatctgttg ccagctgctg gcgaactcca agagtctggc ctggtcctgt gtcctgaggt
     2161 ccaggatctt cttgaaggtt gtgaactgcc tgacctcccg tctagcttgc tgctcccaga
     2221 ggacatggca cttcgcaacc tgcctcccct ccgggctgcc cacagacgct ttaactttga
     2281 cacggatcgg ctcttgctca gcacctcaga ggagacggtc gtgcgcgtct gctgcatccg
     2341 cagctttggc cacttcgttg cccgcctgca aggcagcatc ctgcagttca acccagaggt
     2401 cggcatcttc gtcagcatcg cccagtctga gcaggagagc ctgctgcagc aggcccaggc
     2461 ccagttccgc atggcacagg aggaagctcg gcggaacagg ctaatgagag acatggccca
     2521 gctacggctt cagctcgagg tctctcagct ggaagggagc ctgcagcagc ccaaggccca
     2581 gtcagcaatg tctccctacc tcgtccccga cacccaagcc ctttgccacc acctccctgt
     2641 catccgccag ctggccacca gtggccgctt cattgtcatc atcccaagga cagtgatcga
     2701 tggcctggat ttgctgaaga aggaacaccc cggggcccgg gatgggatcc gatacctgga
     2761 ggcagagttt aaaaaaggga acaggtacat tcgctgccag aaagaggtgg ggaagagctt
     2821 tgagcggcat aagctgaaga ggcaggatgc agatgcctgg acgctctata agatcctgga
     2881 cagctgcaaa cagctgactc tggcccaggg cgcaggtgag gaggacccga gtggcatggt
     2941 gaccatcatc acaggccttc cactggacaa ccccagcacg ctctcaggcc ctatgcaggc
     3001 agccttgcag gccgctgcac atgccagtgt ggacatcaag aatgttctgg acttctacaa
     3061 gcagtggaag gagattggtt gagaccgacc cccaggccct gcagcggggc tgactccaga
     3121 tctctcctgc cctccctggc agccaggacc accacctgta gtcaccccac cacacgcaga
     3181 ctcacgcacg cacacaggaa ggaagcccag ctgcacacag gctgcaggga gggcccagga
     3241 gcggggtccc cctgttgcca agacgacgtc aggaaagcaa ggaaagtgct tggagcagga
     3301 gaggcctgtg ggcccctagc cagccttcct gcctcagccc ccctgctttc cccaggggca
     3361 ggtggcaggc acgggtgtct gcgtttcgtt ggagtggttc ctggacctct gaggggaagg
     3421 gacagcagaa ggggcccttc ttcctcaccc aagacgcagg gtggttggtg ccaggagttt
     3481 gggccctctg ggcctggggg tagagttggg taacaccagg tgtctgggtg gttctctgca
     3541 gacccttcct ctccttgagg accacccatc cccctcttat ctccctttgc aggggctggg
     3601 cagctctgga gccttgggga ctcttaagga agaggggcct ggagctgcct gcaccagtag
     3661 cagggcaggg cttagatccc ctcctcctgc tgcaggggat gcacacccat tgccccgctt
     3721 ctgttttctg tctcccttcg tctagcctcc agggcaggga gcaggcccac aacggctgca
     3781 ggcagtccgg cctatacgcc aatgagggct tctgtgcccg ccagccccat ggtcactgcg
     3841 ctttgtgctc tgggctgctg tgctgggaca gagtgggatg ccggtaagag gagagagggg
     3901 tgaagtttga ggccacaacc ccccttacta tctagggagg ggcctgtgtt tggatggaca
     3961 gcagaaagga gaggcccctt gaagctgccc gcccagggac cctctgccct gatgggcttc
     4021 cctacttttg tccttccccg ggactaaagg cctggaggag ctgagcatgg ggctagcttc
     4081 tggagtgttg aggtgaatgt gagagcagag atcacgaata gctcagggca gtgagtggag
     4141 cagcaagagt ggggctgagt gtgggaggct ttggccagga ttgcctcggc ccctcccgct
     4201 cgggctgcac atacagctcg ggctgggggt tgagggttgg ggatctcagc tctgctgttc
     4261 cccaccccag cactagccta gcttcccaga ctgttctcgg aggagaactg gctgcctgcc
     4321 tccttcctct aagacagcaa gtctggtaca acctgggggg agtgggatca cccccacttc
     4381 cagtccctgg cagaggctga gactaaaagc atcacttaat aaagaccccc agaagcccgc
//
LOCUS       XM_032615271            4099 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SMG5 nonsense mediated mRNA decay factor
            (SMG5), transcript variant X3, mRNA.
ACCESSION   XM_032615271
VERSION     XM_032615271.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4099
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4099
                     /gene="SMG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116745017"
     CDS             114..2741
                     /gene="SMG5"
                     /codon_start=1
                     /product="protein SMG5 isoform X3"
                     /protein_id="XP_032471162.1"
                     /db_xref="GeneID:116745017"
                     /translation="MFGSGHHQSSGCKKPVSASGKEMDWAQMACHRCLVYLGDLSRYQ
                     NELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEV
                     SFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVNFMYLQSLLQPK
                     SSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMV
                     IICLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDG
                     TDEPESKEPLEKVEEPGPEPPPAASQDGEVRKSRKFSRLSCLRRRRHPPKAGDDSDLS
                     EGFDSDSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEDEEG
                     TRSPALEPPRARSEAPESLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLL
                     LQPATEAPTLASRRPCVNGDVDKPSEPASEEGSESEGSESSGRSCRNERSIQEKLQVL
                     MAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLVLC
                     PEVQDLLEGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRLLLSTSEETVVR
                     VCCIRSFGHFVARLQGSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNR
                     LMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFI
                     VIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQD
                     ADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIITGLPLDNPSTLSGPMQAALQAAAH
                     ASVDIKNVLDFYKQWKEIG"
     misc_feature    <162..254
                     /gene="SMG5"
                     /note="Telomerase activating protein Est1; Region: EST1;
                     pfam10374"
                     /db_xref="CDD:463062"
     misc_feature    204..308
                     /gene="SMG5"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    order(207..209,216..221,228..233,237..239,327..329,
                     336..341,348..353,357..362,429..431,438..443,450..455)
                     /gene="SMG5"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    279..>920
                     /gene="SMG5"
                     /note="Est1 DNA/RNA binding domain; Region: EST1_DNA_bind;
                     pfam10373"
                     /db_xref="CDD:431239"
     misc_feature    321..413
                     /gene="SMG5"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    426..494
                     /gene="SMG5"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    2253..2729
                     /gene="SMG5"
                     /note="VapC-like PIN domain of human nonsense-mediated
                     decay factor Smg5, and other similar eukaryotic homologs;
                     Region: PIN_Smg5-like; cd09884"
                     /db_xref="CDD:350232"
     misc_feature    2268..2270
                     /gene="SMG5"
                     /note="conserved Asp residue; other site"
                     /db_xref="CDD:350232"
ORIGIN      
        1 attttaatac acttagaaca gtacctggca catgggaaaa ctgcctgcca agtagccgga
       61 gctctctgaa gttacaaggc tgcctgggtg aagggagagg agagagccca tgcatgtttg
      121 gctctggcca ccaccagtcc tcaggatgca agaagccagt gtctgcctca gggaaggaga
      181 tggattgggc acagatggca tgccaccgat gtctagtgta cctgggggat ttgtcacgat
      241 atcagaatga attagctggc gtagacactg agctgctagc tgagagattt tactaccaag
      301 ccctgtcagt ggctccccag attggaatgc ccttcaacca gctgggcaca cttgccggca
      361 gcaagtacta taatgtggaa gccatgtatt gctacctgcg ctgcatccag tcggaagtgt
      421 cctttgaggg ggcctatggg aacctcaagc ggctgtatga caaggcagcc aaaatgtacc
      481 accagctgaa gaagtgcgag actcggaagc tctctcccag taagaagcga tgtaaagaca
      541 ttaagaggtt gctggtgaac tttatgtatc tgcaaagcct cctgcagccc aaaagcagct
      601 ctgtggactc agagctgaca tcactttgcc agtcagtcct ggaggacttc aacctctgtc
      661 tcttctacct gccctcctca cccaacctca gcctggccag tgaggatgag gaggagtatg
      721 agagtggata tgctttcctc ccggaccttc tcatctttca gatggtcatc atctgcctta
      781 tgggtgtgca cagcttgaag agagcagggt ccaagcagta cagtgcggcc attgccttca
      841 ccctggctct cttctcccac ctcgtcaatc atgtcaacat acggctgcaa gctgagctgg
      901 aagagggcga gaatcccgtc ccggcgttcc agagtgatgg cacagatgaa ccagagtcca
      961 aggaaccctt ggagaaggtg gaggagccgg gtcctgagcc tcctcctgca gcatctcaag
     1021 atggcgaggt cagaaagagc cggaagttct cccgcctctc ctgcctccgc cgccggcgcc
     1081 acccacccaa agctggtgat gacagtgacc tgagtgaagg ctttgactca gactcgagcc
     1141 atgactcagc ccgggccagt gagggctcag acagtggctc cgacaagagc cttgaaggtg
     1201 ggggaactgc ctttgatgcc gagacagatt cagaaatgaa cagccaagag tcccgatcag
     1261 acctggaaga tatggaggac gaggaaggga cacggtcccc agccctggag ccacctcggg
     1321 ccaggtcaga ggctcctgaa tccctcaacg gcccactggg ccccagtgag gccagcattg
     1381 ccagcaatct acaagccatg tccacccaga tgttccagac taaacgctgc ttccgactgg
     1441 cccccacctt cagcaacctg ctcctccagc ccgccaccga agctcccacc ttggccagcc
     1501 gcaggccctg tgtcaatggg gatgtggaca agccctcaga gccagcctct gaagagggct
     1561 ctgagtctga gggaagtgag tctagtgggc gctcctgtcg gaatgagcgc agcatccagg
     1621 agaagctgca agtcctgatg gccgaaggcc tgcttcctgc tgtgaaagtc ttcctggact
     1681 ggctgcggac taaccccgac ctcatcattg tgtgtgcgca gagctctcaa agtctgtgga
     1741 accgcctctc tgtgttgctt aatctgttgc cagctgctgg cgaactccaa gagtctggcc
     1801 tggtcctgtg tcctgaggtc caggatcttc ttgaaggttg tgaactgcct gacctcccgt
     1861 ctagcttgct gctcccagag gacatggcac ttcgcaacct gcctcccctc cgggctgccc
     1921 acagacgctt taactttgac acggatcggc tcttgctcag cacctcagag gagacggtcg
     1981 tgcgcgtctg ctgcatccgc agctttggcc acttcgttgc ccgcctgcaa ggcagcatcc
     2041 tgcagttcaa cccagaggtc ggcatcttcg tcagcatcgc ccagtctgag caggagagcc
     2101 tgctgcagca ggcccaggcc cagttccgca tggcacagga ggaagctcgg cggaacaggc
     2161 taatgagaga catggcccag ctacggcttc agctcgaggt ctctcagctg gaagggagcc
     2221 tgcagcagcc caaggcccag tcagcaatgt ctccctacct cgtccccgac acccaagccc
     2281 tttgccacca cctccctgtc atccgccagc tggccaccag tggccgcttc attgtcatca
     2341 tcccaaggac agtgatcgat ggcctggatt tgctgaagaa ggaacacccc ggggcccggg
     2401 atgggatccg atacctggag gcagagttta aaaaagggaa caggtacatt cgctgccaga
     2461 aagaggtggg gaagagcttt gagcggcata agctgaagag gcaggatgca gatgcctgga
     2521 cgctctataa gatcctggac agctgcaaac agctgactct ggcccagggc gcaggtgagg
     2581 aggacccgag tggcatggtg accatcatca caggccttcc actggacaac cccagcacgc
     2641 tctcaggccc tatgcaggca gccttgcagg ccgctgcaca tgccagtgtg gacatcaaga
     2701 atgttctgga cttctacaag cagtggaagg agattggttg agaccgaccc ccaggccctg
     2761 cagcggggct gactccagat ctctcctgcc ctccctggca gccaggacca ccacctgtag
     2821 tcaccccacc acacgcagac tcacgcacgc acacaggaag gaagcccagc tgcacacagg
     2881 ctgcagggag ggcccaggag cggggtcccc ctgttgccaa gacgacgtca ggaaagcaag
     2941 gaaagtgctt ggagcaggag aggcctgtgg gcccctagcc agccttcctg cctcagcccc
     3001 cctgctttcc ccaggggcag gtggcaggca cgggtgtctg cgtttcgttg gagtggttcc
     3061 tggacctctg aggggaaggg acagcagaag gggcccttct tcctcaccca agacgcaggg
     3121 tggttggtgc caggagtttg ggccctctgg gcctgggggt agagttgggt aacaccaggt
     3181 gtctgggtgg ttctctgcag acccttcctc tccttgagga ccacccatcc ccctcttatc
     3241 tccctttgca ggggctgggc agctctggag ccttggggac tcttaaggaa gaggggcctg
     3301 gagctgcctg caccagtagc agggcagggc ttagatcccc tcctcctgct gcaggggatg
     3361 cacacccatt gccccgcttc tgttttctgt ctcccttcgt ctagcctcca gggcagggag
     3421 caggcccaca acggctgcag gcagtccggc ctatacgcca atgagggctt ctgtgcccgc
     3481 cagccccatg gtcactgcgc tttgtgctct gggctgctgt gctgggacag agtgggatgc
     3541 cggtaagagg agagaggggt gaagtttgag gccacaaccc cccttactat ctagggaggg
     3601 gcctgtgttt ggatggacag cagaaaggag aggccccttg aagctgcccg cccagggacc
     3661 ctctgccctg atgggcttcc ctacttttgt ccttccccgg gactaaaggc ctggaggagc
     3721 tgagcatggg gctagcttct ggagtgttga ggtgaatgtg agagcagaga tcacgaatag
     3781 ctcagggcag tgagtggagc agcaagagtg gggctgagtg tgggaggctt tggccaggat
     3841 tgcctcggcc cctcccgctc gggctgcaca tacagctcgg gctgggggtt gagggttggg
     3901 gatctcagct ctgctgttcc ccaccccagc actagcctag cttcccagac tgttctcgga
     3961 ggagaactgg ctgcctgcct ccttcctcta agacagcaag tctggtacaa cctgggggga
     4021 gtgggatcac ccccacttcc agtccctggc agaggctgag actaaaagca tcacttaata
     4081 aagaccccca gaagcccgc
//
LOCUS       XM_032615281            3892 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SMG5 nonsense mediated mRNA decay factor
            (SMG5), transcript variant X4, mRNA.
ACCESSION   XM_032615281
VERSION     XM_032615281.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3892
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3892
                     /gene="SMG5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116745017"
     CDS             120..2534
                     /gene="SMG5"
                     /codon_start=1
                     /product="protein SMG5 isoform X4"
                     /protein_id="XP_032471172.1"
                     /db_xref="GeneID:116745017"
                     /translation="MPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLY
                     DKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVNFMYLQSLLQPKSSSVDSELTSLCQ
                     SVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVIICLMGVHSLKRA
                     GSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDEPESKEPLEKV
                     EEPGPEPPPAASQDGEVRKSRKFSRLSCLRRRRHPPKAGDDSDLSEGFDSDSSHDSAR
                     ASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEDEEGTRSPALEPPRARS
                     EAPESLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPATEAPTLASR
                     RPCVNGDVDKPSEPASEEGSESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKVFL
                     DWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLVLCPEVQDLLEGCELP
                     DLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRLLLSTSEETVVRVCCIRSFGHFVAR
                     LQGSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLE
                     VSQLEGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDL
                     LKKEHPGARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSC
                     KQLTLAQGAGEEDPSGMVTIITGLPLDNPSTLSGPMQAALQAAAHASVDIKNVLDFYK
                     QWKEIG"
     misc_feature    120..>713
                     /gene="SMG5"
                     /note="Est1 DNA/RNA binding domain; Region: EST1_DNA_bind;
                     pfam10373"
                     /db_xref="CDD:431239"
     misc_feature    2046..2522
                     /gene="SMG5"
                     /note="VapC-like PIN domain of human nonsense-mediated
                     decay factor Smg5, and other similar eukaryotic homologs;
                     Region: PIN_Smg5-like; cd09884"
                     /db_xref="CDD:350232"
     misc_feature    2061..2063
                     /gene="SMG5"
                     /note="conserved Asp residue; other site"
                     /db_xref="CDD:350232"
ORIGIN      
        1 acccaagcag cctgccttct agctcagcac gatatcagaa tgaattagct ggcgtagaca
       61 ctgagctgct agctgagaga ttttactacc aagccctgtc agtggctccc cagattggaa
      121 tgcccttcaa ccagctgggc acacttgccg gcagcaagta ctataatgtg gaagccatgt
      181 attgctacct gcgctgcatc cagtcggaag tgtcctttga gggggcctat gggaacctca
      241 agcggctgta tgacaaggca gccaaaatgt accaccagct gaagaagtgc gagactcgga
      301 agctctctcc cagtaagaag cgatgtaaag acattaagag gttgctggtg aactttatgt
      361 atctgcaaag cctcctgcag cccaaaagca gctctgtgga ctcagagctg acatcacttt
      421 gccagtcagt cctggaggac ttcaacctct gtctcttcta cctgccctcc tcacccaacc
      481 tcagcctggc cagtgaggat gaggaggagt atgagagtgg atatgctttc ctcccggacc
      541 ttctcatctt tcagatggtc atcatctgcc ttatgggtgt gcacagcttg aagagagcag
      601 ggtccaagca gtacagtgcg gccattgcct tcaccctggc tctcttctcc cacctcgtca
      661 atcatgtcaa catacggctg caagctgagc tggaagaggg cgagaatccc gtcccggcgt
      721 tccagagtga tggcacagat gaaccagagt ccaaggaacc cttggagaag gtggaggagc
      781 cgggtcctga gcctcctcct gcagcatctc aagatggcga ggtcagaaag agccggaagt
      841 tctcccgcct ctcctgcctc cgccgccggc gccacccacc caaagctggt gatgacagtg
      901 acctgagtga aggctttgac tcagactcga gccatgactc agcccgggcc agtgagggct
      961 cagacagtgg ctccgacaag agccttgaag gtgggggaac tgcctttgat gccgagacag
     1021 attcagaaat gaacagccaa gagtcccgat cagacctgga agatatggag gacgaggaag
     1081 ggacacggtc cccagccctg gagccacctc gggccaggtc agaggctcct gaatccctca
     1141 acggcccact gggccccagt gaggccagca ttgccagcaa tctacaagcc atgtccaccc
     1201 agatgttcca gactaaacgc tgcttccgac tggcccccac cttcagcaac ctgctcctcc
     1261 agcccgccac cgaagctccc accttggcca gccgcaggcc ctgtgtcaat ggggatgtgg
     1321 acaagccctc agagccagcc tctgaagagg gctctgagtc tgagggaagt gagtctagtg
     1381 ggcgctcctg tcggaatgag cgcagcatcc aggagaagct gcaagtcctg atggccgaag
     1441 gcctgcttcc tgctgtgaaa gtcttcctgg actggctgcg gactaacccc gacctcatca
     1501 ttgtgtgtgc gcagagctct caaagtctgt ggaaccgcct ctctgtgttg cttaatctgt
     1561 tgccagctgc tggcgaactc caagagtctg gcctggtcct gtgtcctgag gtccaggatc
     1621 ttcttgaagg ttgtgaactg cctgacctcc cgtctagctt gctgctccca gaggacatgg
     1681 cacttcgcaa cctgcctccc ctccgggctg cccacagacg ctttaacttt gacacggatc
     1741 ggctcttgct cagcacctca gaggagacgg tcgtgcgcgt ctgctgcatc cgcagctttg
     1801 gccacttcgt tgcccgcctg caaggcagca tcctgcagtt caacccagag gtcggcatct
     1861 tcgtcagcat cgcccagtct gagcaggaga gcctgctgca gcaggcccag gcccagttcc
     1921 gcatggcaca ggaggaagct cggcggaaca ggctaatgag agacatggcc cagctacggc
     1981 ttcagctcga ggtctctcag ctggaaggga gcctgcagca gcccaaggcc cagtcagcaa
     2041 tgtctcccta cctcgtcccc gacacccaag ccctttgcca ccacctccct gtcatccgcc
     2101 agctggccac cagtggccgc ttcattgtca tcatcccaag gacagtgatc gatggcctgg
     2161 atttgctgaa gaaggaacac cccggggccc gggatgggat ccgatacctg gaggcagagt
     2221 ttaaaaaagg gaacaggtac attcgctgcc agaaagaggt ggggaagagc tttgagcggc
     2281 ataagctgaa gaggcaggat gcagatgcct ggacgctcta taagatcctg gacagctgca
     2341 aacagctgac tctggcccag ggcgcaggtg aggaggaccc gagtggcatg gtgaccatca
     2401 tcacaggcct tccactggac aaccccagca cgctctcagg ccctatgcag gcagccttgc
     2461 aggccgctgc acatgccagt gtggacatca agaatgttct ggacttctac aagcagtgga
     2521 aggagattgg ttgagaccga cccccaggcc ctgcagcggg gctgactcca gatctctcct
     2581 gccctccctg gcagccagga ccaccacctg tagtcacccc accacacgca gactcacgca
     2641 cgcacacagg aaggaagccc agctgcacac aggctgcagg gagggcccag gagcggggtc
     2701 cccctgttgc caagacgacg tcaggaaagc aaggaaagtg cttggagcag gagaggcctg
     2761 tgggccccta gccagccttc ctgcctcagc ccccctgctt tccccagggg caggtggcag
     2821 gcacgggtgt ctgcgtttcg ttggagtggt tcctggacct ctgaggggaa gggacagcag
     2881 aaggggccct tcttcctcac ccaagacgca gggtggttgg tgccaggagt ttgggccctc
     2941 tgggcctggg ggtagagttg ggtaacacca ggtgtctggg tggttctctg cagacccttc
     3001 ctctccttga ggaccaccca tccccctctt atctcccttt gcaggggctg ggcagctctg
     3061 gagccttggg gactcttaag gaagaggggc ctggagctgc ctgcaccagt agcagggcag
     3121 ggcttagatc ccctcctcct gctgcagggg atgcacaccc attgccccgc ttctgttttc
     3181 tgtctccctt cgtctagcct ccagggcagg gagcaggccc acaacggctg caggcagtcc
     3241 ggcctatacg ccaatgaggg cttctgtgcc cgccagcccc atggtcactg cgctttgtgc
     3301 tctgggctgc tgtgctggga cagagtggga tgccggtaag aggagagagg ggtgaagttt
     3361 gaggccacaa ccccccttac tatctaggga ggggcctgtg tttggatgga cagcagaaag
     3421 gagaggcccc ttgaagctgc ccgcccaggg accctctgcc ctgatgggct tccctacttt
     3481 tgtccttccc cgggactaaa ggcctggagg agctgagcat ggggctagct tctggagtgt
     3541 tgaggtgaat gtgagagcag agatcacgaa tagctcaggg cagtgagtgg agcagcaaga
     3601 gtggggctga gtgtgggagg ctttggccag gattgcctcg gcccctcccg ctcgggctgc
     3661 acatacagct cgggctgggg gttgagggtt ggggatctca gctctgctgt tccccacccc
     3721 agcactagcc tagcttccca gactgttctc ggaggagaac tggctgcctg cctccttcct
     3781 ctaagacagc aagtctggta caacctgggg ggagtgggat cacccccact tccagtccct
     3841 ggcagaggct gagactaaaa gcatcactta ataaagaccc ccagaagccc gc
//
LOCUS       XM_032615295            1990 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chaperonin containing TCP1 subunit 3
            (CCT3), transcript variant X1, mRNA.
ACCESSION   XM_032615295
VERSION     XM_032615295.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1990
                     /gene="CCT3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 16 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116745032"
     CDS             127..1764
                     /gene="CCT3"
                     /codon_start=1
                     /product="T-complex protein 1 subunit gamma isoform X1"
                     /protein_id="XP_032471186.1"
                     /db_xref="GeneID:116745032"
                     /translation="MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPK
                     SMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILA
                     GEMLSVAEHFLEQQMHPTVVISAYRRALDDMISTLKKISTPVDTSNRDAMLNIINSSI
                     TTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGV
                     MINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQ
                     QLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGGRIVSR
                     PEELREEDVGTGAGLLEIKKIGDEYFTFITECRDPKACTILLRGASKEILSEVERNLQ
                     DAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRT
                     LIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKT
                     AVETAVLLLRIDDIVSGHKKKGDDQSQQGGAPDAGQE"
     misc_feature    142..1713
                     /gene="CCT3"
                     /note="T-complex protein 1, gamma subunit; Region:
                     chap_CCT_gamma; TIGR02344"
                     /db_xref="CDD:274085"
ORIGIN      
        1 ggagagtagc gggtttgcgt gtgagccctg tggaagcagc gttttctggg cttcgctggt
       61 tctctctctc cagaaggttc tgctggttcc cccagctcgg ggtacccggc tctgcatcgc
      121 gccgccatga tgggccatcg tccggtactc gtgcttagcc agaacacaaa gcgtgaatct
      181 ggaagaaaag ttcaatctgg aaacatcaat gccgccaaga ctattgcaga tatcatccga
      241 acatgtttgg gacccaagtc tatgatgaag atgcttttgg acccaatggg aggcatcgtg
      301 atgaccaatg atggcaatgc tattcttcga gagattcaag tacagcatcc agcagccaag
      361 tccatgattg aaattagccg gacacaggat gaagaggttg gagatgggac cacatctgta
      421 attattcttg caggggagat gttatctgtg gctgagcact tcctagagca gcagatgcac
      481 ccaacagtgg tgatcagtgc ttaccgcagg gctctggacg atatgatcag cacccttaag
      541 aaaataagta cccctgttga caccagtaac cgagatgcga tgctgaacat catcaacagc
      601 tccattacta ccaaagtaat cagtcggtgg tcttctttgg cttgcaacat tgccctggat
      661 gctgtcaaaa ctgtacagtt tgaggagaac ggtcggaagg agattgacat caagaaatat
      721 gcaagggtag aaaagatacc tggcggcatc attgaagact cgtgtgtgtt acgtggagtc
      781 atgattaaca aggatgtgac ccatccgcgg atgcggcgct atattaagaa ccctcgcatc
      841 gtgctgctgg attcttctct agaatacaag aaaggagaaa gccagactga cattgagatc
      901 acacgagagg aagacttcac ccgaatcctc caaatggaag aagagtacat tcagcagctc
      961 tgtgaggaca ttatccatct gaagccagac gtggtcatca cagaaaaggg catctcggat
     1021 ttagctcagc actacctcat gcgggctaat atcacagcca tccgcagagt ccggaagaca
     1081 gacaataatc gcattgctag agcctgtggg ggccgaatag tcagccgacc agaggaactg
     1141 agagaagaag atgttgggac aggggcaggc ctgttggaaa tcaagaaaat tggagatgag
     1201 tactttacat tcatcactga gtgcagagac cccaaggcct gcaccattct cctacggggg
     1261 gccagcaaag agattctctc ggaagtagaa cgcaacctcc aggatgccat gcaggtgtgc
     1321 cgcaatgttc tcctggaccc tcagctggtg cctgggggtg gggcttctga gatggctgtg
     1381 gctcatgcct tgacagaaaa atccaaggcc atgactggtg tggaacaatg gccatatcgg
     1441 gctgttgccc aagccctaga ggtcatccct cgtaccctta ttcaaaactg tggggccagc
     1501 accatccgtc tacttacctc ccttcgggcc aagcacaccc aggagagttg tgagacctgg
     1561 ggcgtaaatg gtgagacagg tactttggtg gacatgaaag aactgggcat ctgggaacca
     1621 ttggctgtaa agctgcaaac gtataagaca gcagtggaga cggcagttct actgctgcgg
     1681 attgatgaca tcgtatcagg ccacaaaaaa aagggtgatg accagagcca gcaaggcggg
     1741 gctcctgatg ctggccagga gtgagcggtg gcaaggcaac ctcaacgcac agagccaaca
     1801 gtctccccct tccctgagcc agactgccag ggacactgtg gatgtctttg tttggaagag
     1861 attgggctga ggggcagccc cagtcccttt ctgtcccagc tcagtttgca aaaggcactg
     1921 acatgtaatt cttctctatt gtaagctttc catttagttt gcttccgatg attaaatcta
     1981 agtcatttga
//
LOCUS       XM_032615305            2052 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chaperonin containing TCP1 subunit 3
            (CCT3), transcript variant X2, mRNA.
ACCESSION   XM_032615305
VERSION     XM_032615305.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2052
                     /gene="CCT3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 1
                     Protein, and 93% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116745032"
     CDS             480..1826
                     /gene="CCT3"
                     /codon_start=1
                     /product="T-complex protein 1 subunit gamma isoform X2"
                     /protein_id="XP_032471196.1"
                     /db_xref="GeneID:116745032"
                     /translation="MKEVAGEMLSVAEHFLEQQMHPTVVISAYRRALDDMISTLKKIS
                     TPVDTSNRDAMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYA
                     RVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIE
                     ITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRV
                     RKTDNNRIARACGGRIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECRDPKACT
                     ILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTG
                     VEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVD
                     MKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSQQGGAPDAGQE"
     misc_feature    492..1775
                     /gene="CCT3"
                     /note="T-complex protein 1, gamma subunit; Region:
                     chap_CCT_gamma; TIGR02344"
                     /db_xref="CDD:274085"
ORIGIN      
        1 gagccctgtg gaagcagcgt tttctgggct tcgctggttc tctctctcca gaaggttctg
       61 ctggttcccc cagctcgggg tacccggctc tgcatcgcgc cgccatgatg ggccatcgtc
      121 cggtactcgt gcttagccag aacacaaagc gtgaatctgg aagaaaagtt caatctggaa
      181 acatcaatgc cgccaagact attgcagata tcatccgaac atgtttggga cccaagtcta
      241 tgatgaagat gcttttggac ccaatgggag gcatcgtgat gaccaatgat ggcaatgcta
      301 ttcttcgaga gattcaagta cagcatccag cagccaagtc catgattgaa attagccgga
      361 cacaggatga agaggttgga gatgggacca catctgtaat tattcttgat ccagttcttt
      421 tgtggattga gaattaatta cgtatggcta gttctgtact ttgaagagaa acttggagga
      481 tgaaagaagt agcaggggag atgttatctg tggctgagca cttcctagag cagcagatgc
      541 acccaacagt ggtgatcagt gcttaccgca gggctctgga cgatatgatc agcaccctta
      601 agaaaataag tacccctgtt gacaccagta accgagatgc gatgctgaac atcatcaaca
      661 gctccattac taccaaagta atcagtcggt ggtcttcttt ggcttgcaac attgccctgg
      721 atgctgtcaa aactgtacag tttgaggaga acggtcggaa ggagattgac atcaagaaat
      781 atgcaagggt agaaaagata cctggcggca tcattgaaga ctcgtgtgtg ttacgtggag
      841 tcatgattaa caaggatgtg acccatccgc ggatgcggcg ctatattaag aaccctcgca
      901 tcgtgctgct ggattcttct ctagaataca agaaaggaga aagccagact gacattgaga
      961 tcacacgaga ggaagacttc acccgaatcc tccaaatgga agaagagtac attcagcagc
     1021 tctgtgagga cattatccat ctgaagccag acgtggtcat cacagaaaag ggcatctcgg
     1081 atttagctca gcactacctc atgcgggcta atatcacagc catccgcaga gtccggaaga
     1141 cagacaataa tcgcattgct agagcctgtg ggggccgaat agtcagccga ccagaggaac
     1201 tgagagaaga agatgttggg acaggggcag gcctgttgga aatcaagaaa attggagatg
     1261 agtactttac attcatcact gagtgcagag accccaaggc ctgcaccatt ctcctacggg
     1321 gggccagcaa agagattctc tcggaagtag aacgcaacct ccaggatgcc atgcaggtgt
     1381 gccgcaatgt tctcctggac cctcagctgg tgcctggggg tggggcttct gagatggctg
     1441 tggctcatgc cttgacagaa aaatccaagg ccatgactgg tgtggaacaa tggccatatc
     1501 gggctgttgc ccaagcccta gaggtcatcc ctcgtaccct tattcaaaac tgtggggcca
     1561 gcaccatccg tctacttacc tcccttcggg ccaagcacac ccaggagagt tgtgagacct
     1621 ggggcgtaaa tggtgagaca ggtactttgg tggacatgaa agaactgggc atctgggaac
     1681 cattggctgt aaagctgcaa acgtataaga cagcagtgga gacggcagtt ctactgctgc
     1741 ggattgatga catcgtatca ggccacaaaa aaaagggtga tgaccagagc cagcaaggcg
     1801 gggctcctga tgctggccag gagtgagcgg tggcaaggca acctcaacgc acagagccaa
     1861 cagtctcccc cttccctgag ccagactgcc agggacactg tggatgtctt tgtttggaag
     1921 agattgggct gaggggcagc cccagtccct ttctgtccca gctcagtttg caaaaggcac
     1981 tgacatgtaa ttcttctcta ttgtaagctt tccatttagt ttgcttccga tgattaaatc
     2041 taagtcattt ga
//
LOCUS       XM_032615320            3490 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycosylated lysosomal membrane protein
            (GLMP), transcript variant X1, mRNA.
ACCESSION   XM_032615320
VERSION     XM_032615320.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3490
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3490
                     /gene="GLMP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116745037"
     CDS             41..1219
                     /gene="GLMP"
                     /codon_start=1
                     /product="glycosylated lysosomal membrane protein"
                     /protein_id="XP_032471211.1"
                     /db_xref="GeneID:116745037"
                     /translation="MRSAVLLLSLLLTAAPFGLLGEETRQVSLKVISDWLHPSQNLLH
                     IQAVGATSTLHYVWSSLGPPAVLLVATNTPNSTLSVNWNLLISSKPDGGIVVLPKESI
                     QFSSALVFTRLFEFDSTNTSDAAAKPPGKSYPPYSLADFSWDNITDSLDPATLSATFR
                     GHPIHDPTAAFASGSLAFRVQAFSRSGRPAQPPRLLHTADTCQLEVDLVGASPRGNHS
                     LFGLEVATLGHGPDCPSVQEQHSIDDEYAPGVFQLDQLLWGSLPSGFMQWRPVAFSQK
                     QGGRESAMPCQASPLYPTLAYLLPQSPIVRAFFGSQNNFCAFNLTFGASTGPGYWDKH
                     YLSWSMLLGVGTPPVDALSLLVVGIVAVALGAPALMLLAGGVFLLLGHKRYSEYQPIN
                     "
     misc_feature    161..1192
                     /gene="GLMP"
                     /note="Lysosomal transcription factor, NCU-G1; Region:
                     NCU-G1; pfam15065"
                     /db_xref="CDD:464480"
ORIGIN      
        1 gtctcttccg ccttctgaag tcgggactgc gtgagaagct atgaggagcg ccgtgctcct
       61 cctgagccta cttctgacag cagctccgtt tggccttctg ggggaggaga cccgccaggt
      121 gtctctgaag gtcatctctg actggctgca cccttcccag aacctgcttc atatccaggc
      181 agtgggtgcc acttccaccc tgcactatgt gtggagcagc ctgggacccc cagccgtgct
      241 gctggtggcc accaacaccc ccaacagcac cctgagtgtc aactggaacc tcctgatttc
      301 ctctaagcct gacgggggca tcgtggtgct ccccaaggag agcatccaat tttcttctgc
      361 cctcgtcttt accaggctgt ttgagtttga cagcaccaac acatccgatg cagccgcaaa
      421 gcctccagga aaatcgtatc ccccatactc cttggccgat ttctcctggg acaacatcac
      481 tgactcattg gatcctgcca ccctgagcgc cacatttcga ggccacccca ttcacgaccc
      541 cactgcggct tttgccagtg gcagcctggc cttcagggtt caggccttct ccagatctgg
      601 ccgaccagcc caaccccctc gcctcctgca cacagcggac acctgccagc tagaggtgga
      661 cctggttggg gcctctcccc ggggaaacca ctccttgttt gggctggagg tagccacgtt
      721 gggccatggc cctgactgcc cctcagtgca ggagcagcac tccatcgatg atgaatatgc
      781 acctggcgtc ttccagttgg accagctgct atggggctcc ctcccatcag gcttcatgca
      841 gtggcgacca gtggctttct ctcagaagca ggggggccgg gaatcagcca tgccctgcca
      901 agcttcccct ctttacccca ccttggcata ccttctcccc cagtcaccca ttgtccgagc
      961 cttctttggg tcccagaaca acttctgtgc cttcaatctg acatttgggg cttccaccgg
     1021 ccctggctac tgggacaaac actacctcag ctggtccatg ctcctgggtg tgggcacccc
     1081 tccagtagat gccttgtcct tgctagtcgt aggcatcgtg gcagtggccc tgggtgctcc
     1141 agcgctcatg ctgctggcag gaggcgtgtt tctgctgctg ggccacaagc ggtactcaga
     1201 atatcagcct ataaattgag gcctgctctc tagagggaag gacattactg gacctgcctt
     1261 gctggtctgc aggtttgagg gtcagtattc ctagccagct gctccctttt cgcatcttgc
     1321 ttttctgcag aacctcagag accagcctca acttcctgcg gacccaggtg gggcttcctt
     1381 caaactttga ggagggacca gggacagagt gattgctaga gggagggtcc cctctgcatt
     1441 gcctccccac ccctccatcc ccccatttcc cttgaatggg actcacaggc ctaaatgaga
     1501 ggccttctga cttgtctgct accctggagg gcatgaaata gactaagttt ttccccaggg
     1561 cttgtctctc agtgtgtgag tgttgctggg tctggttcca gggaatgaga gggctggagg
     1621 tgggcatgga agacaatttc ttgtttgcag caccatttct tccccaggcc cagttctctc
     1681 ccttgccatg ggaccaggct cctgccagcc actcttcaac atgtggagct gggaggtctc
     1741 tgttgcagtc tgaatcaaac aaggaaggga cacttgagac ggtgcaaaca cgaaggaaga
     1801 gccaaggaag acagtggtag ttgtttattg ttacacacac attcacatgg ggttaacatc
     1861 aaccactatg tcttccaacc actcccagcc accacaggtg tgggtgcgtg cgcgcacgcg
     1921 cgcgcacaca cacacacacg cgcacacaca cacacacaca cacacacacg cctcttggga
     1981 ggcaggtttc cctgtctgcc cctcttccca tgagagaggt atgacttctg ggcagtttgg
     2041 aggtgcaagg ttacagggac ctaaagggtt ggaagggagg aggcagccac actggattgg
     2101 gacagctgta attgacttga ctgaggctca agagcctata tggccagtca tggagggtcc
     2161 tgaatacagg tccccaagaa ggttttcacc aaacatgaac gtcctatttg atctgatggc
     2221 cagccattac ctttaggcat gggcaaggtt tctagtctct ttgaggccct ctgcttggac
     2281 acccagcaca gaaatggtca gagttttggc tgtggctctg ctggctgcct tacaggaggc
     2341 tggagagtgg agcagagtcc agccattgtg ggccctagtg gcagtggtgg gaggctgctc
     2401 cggaaggaac catgcctctg ctcctggtcc tgtgccctca gcatccttaa ggaatatggc
     2461 tgtccacctc tttccctgaa agaatgtctg agtccctccc gcctaattgt cccaggctcc
     2521 aaaggtgaag gggagtgccc caactcggag agcaggggac agtccaggct ctgattggat
     2581 gggacccctg tcggggcagt aggtgggttc atcccaccca ggtaccaggg ctgggagcaa
     2641 gggggtgggg cggcttagcc ccaggagcga ggcctgtagt ctgaggctga gcgggcgtgg
     2701 tcagggtagt ccaggcggct ctcggaggca gtgagcatgc gttcgggctc caccacgaac
     2761 atatagtaga ggttccacac cagcatggac agcaggggca ggaatgtcag gccgtagcca
     2821 aagcctcgga aggagcggcc cacggcaaag gtcagccagt atatcagcct gggaggcaag
     2881 aaaaaatcgg gctttccttg agaggagtac atgagctaac tggcgacagg ctgatgatgg
     2941 ggggaataca aagtgaaggc agtggctggg tgttggccag cacaactgat acctctaaag
     3001 acagccagtg tttatgtact tatcatgtgc caggcatggt accagttact ttaggggcaa
     3061 tgtttaattt aatttagacc cccgcatctc tgtgaagtgt gtatattatt cacctccctc
     3121 tttgtgtact tttcaaattt taattaaaaa attttgagta ggcagtatac atttacatgg
     3181 gtcaaaattc aaaggtacca gtgagtatag taaaatgtct tcccttactg attcccagat
     3241 accctattct cgtccttcac cttctcacct ctgttccact ccaccccaga catccagtat
     3301 tttggtttct tgtacatcgt gatgttttct ttacatatga gcgaaaagat ttatgttttc
     3361 cttttccctt tttttttgga agtttggtaa catactaaat atagagattg ttctgcacat
     3421 tgattttttt cccctcattt aatgtatctt ggagattgtg ttagtatata aacagcttca
     3481 ttatttcaca
//
LOCUS       XR_004347240            1499 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycosylated lysosomal membrane protein
            (GLMP), transcript variant X2, misc_RNA.
ACCESSION   XR_004347240
VERSION     XR_004347240.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1499
                     /gene="GLMP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116745037"
     misc_RNA        1..1499
                     /gene="GLMP"
                     /product="glycosylated lysosomal membrane protein,
                     transcript variant X2"
                     /db_xref="GeneID:116745037"
ORIGIN      
        1 gtctcttccg ccttctgaag tcgggactgc gtgagaagct atgaggagcg ccgtgctcct
       61 cctgagccta cttctgacag cagctccgtt tggccttctg ggggaggaga cccgccaggt
      121 gtctctgaag gtcatctctg actggctgca cccttcccag aacctgcttc atatccaggc
      181 agtgggtgcc acttccaccc tgcactatgt gtggagcagc ctgggacccc cagccgtgct
      241 gctggtggcc accaacaccc ccaacagcac cctgagtgtc aactggaacc tcctgatttc
      301 ctctaagcct gacgggggca tcgtggtgct ccccaaggag agcatccaat tttcttctgc
      361 cctcgtcttt accaggctgt ttgagtttga cagcaccaac acatccgatg cagccgcaaa
      421 gcctccagga aaatcgtatc ccccatactc cttggccgat ttctcctggg acaacatcac
      481 tgactcattg gatcctgcca ccctgagcgc cacatttcga ggccacccca ttcacgaccc
      541 cactgcggct tttgccagtg gcagcctggc cttcagggtt caggccttct ccagatctgg
      601 ccgaccagcc caaccccctc gcctcctgca cacagcggac acctgccagc tagaggtgga
      661 cctggttggg gcctctcccc ggggaaacca ctccttgttt gggctggagg tagccacgtt
      721 gggccatggc cctgactgcc cctcagtgca ggagcagcac tccatcgatg atgaatatgc
      781 acctggcgtc ttccagttgg accagctgct atggggctcc ctcccatcag gcttcatgca
      841 gtggcgacca gtggctttct ctcagaagca ggggggccgg gaatcagcca tgccctgcca
      901 agcttcccct ctttacccca ccttggcata ccttctcccc cagtcaccca ttgtccgagc
      961 cttctttggg tcccagaaca acttctgtgc cttcaatctg acatttgggg cttccaccgg
     1021 ccctggctac tgggacaaac actacctcag ctggtccatg ctcctgggtg tgggcacccc
     1081 tccagtagat gccttgtcct tgctagtcgt aggcatcgtg gcagtggccc tgggtgctcc
     1141 agcgctcatg ctgctggcag gaggcgtgtt tctgctgctg ggccacaagc ggtactcaga
     1201 atatcagcct ataaattgag gcctgctctc tagagggaag gacattactg gacctgcctt
     1261 gctggtctgc aggtttgagg gtcagtattc ctagccagct gctccctttt cgcatcttgc
     1321 ttttctgcag aacctcagag accagcctca acttcctgcg gacccaggcc cagttctctc
     1381 ccttgccatg ggaccaggct cctgccagcc actcttcaac atgtggagct gggaggtctc
     1441 tgttgcagtc tgaatcaaac aaggaaggga cacttgagac ggtgcaaaca cgaaggaag
//
LOCUS       XR_004347241            1423 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycosylated lysosomal membrane protein
            (GLMP), transcript variant X3, misc_RNA.
ACCESSION   XR_004347241
VERSION     XR_004347241.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1423
                     /gene="GLMP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116745037"
     misc_RNA        1..1423
                     /gene="GLMP"
                     /product="glycosylated lysosomal membrane protein,
                     transcript variant X3"
                     /db_xref="GeneID:116745037"
ORIGIN      
        1 gtctcttccg ccttctgaag tcgggactgc gtgagaagct atgaggagcg ccgtgctcct
       61 cctgagccta cttctgacag cagctccgtt tggccttctg ggggaggaga cccgccaggt
      121 gtctctgaag gtcatctctg actggctgca cccttcccag aacctgcttc atatccaggc
      181 agtgggtgcc acttccaccc tgcactatgt gtggagcagc ctgggacccc cagccgtgct
      241 gctggtggcc accaacaccc ccaacagcac cctgagtgtc aactggaacc tcctgatttc
      301 ctctaagcct gacgggggca tcgtggtgct ccccaaggag agcatccaat tttcttctgc
      361 cctcgtcttt accaggctgt ttgagtttga cagcaccaac acatccgatg cagccgcaaa
      421 gcctccagga aaatcgtatc ccccatactc cttggccgat ttctcctggg acaacatcac
      481 tgactcattg gatcctgcca ccctgagcgc cacatttcga ggccacccca ttcacgaccc
      541 cactgcggct tttgccagtg gcagcctggc cttcagggtt caggccttct ccagatctgg
      601 ccgaccagcc caaccccctc gcctcctgca cacagcggac acctgccagc tagaggtgga
      661 cctggttggg gcctctcccc ggggaaacca ctccttgttt gggctggagg tagccacgtt
      721 gggccatggc cctgactgcc cctcagtgca ggagcagcac tccatcgatg atgaatatgc
      781 acctggcgtc ttccagttgg accagctgct atggggctcc ctcccatcag gcttcatgca
      841 gtggcgacca gtggctttct ctcagaagca ggggggccgg gaatcagcca tgccctgcca
      901 agcttcccct ctttacccca ccttggcata ccttctcccc cagtcaccca ttgtccgagc
      961 cttctttggg tcccagaaca acttctgtgc cttcaatctg acatttgggg cttccaccgg
     1021 ccctggctac tgggacaaac actacctcag ctggtccatg ctcctgggtg tgggcacccc
     1081 tccagtagat gccttgtcct tgctagtcgt aggcatcgtg gcagtggccc tgggtgctcc
     1141 agcgctcatg ctgctggcag gaggcgtgtt tctgctgctg ggccacaagc ggtactcaga
     1201 atatcagcct ataaattgag gcctgctctc tagagggaag gacattactg gacctgcctt
     1261 gctggtctgc aggtttgagg gcccagttct ctcccttgcc atgggaccag gctcctgcca
     1321 gccactcttc aacatgtgga gctgggaggt ctctgttgca gtctgaatca aacaaggaag
     1381 ggacacttga gacggtgcaa acacgaagga agagccaagg aag
//
LOCUS       XM_032615340            1419 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus progestin and adipoQ receptor family
            member 6 (PAQR6), transcript variant X1, mRNA.
ACCESSION   XM_032615340
VERSION     XM_032615340.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1419
                     /gene="PAQR6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116745042"
     CDS             30..1274
                     /gene="PAQR6"
                     /codon_start=1
                     /product="membrane progestin receptor delta isoform X1"
                     /protein_id="XP_032471231.1"
                     /db_xref="GeneID:116745042"
                     /translation="MHTHCPASVFCLPSSSLQGREQAHNGCRQSGLYANEGFCARQPH
                     GHCALCSGLLCWDRVGCRSTWRCRATMLSLKLPQLLRVHQVPRVFWEDGIMSGYRRPT
                     SSALDCVLSSFQMTNETVNIWTHFLPTWYFLWRLLALAGGQGFRSEPYHWPLLVFLLP
                     ACLYPFASCCAHTFSSMSPRARHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHSRL
                     HQLFVPAAALNSFLCTGLSCYSRFPELESPALSKILRTAAFTYPFLFDNLPLFYRLGL
                     CWGRGHSCGQEALSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIGHSHQLFHICA
                     VLGTHFQLEAVLADMGSRRAWLAMQEPPLGLAGTVATLGLAVAGNLLIIAAFTASLFR
                     APSTCPLLQGGPLERNTKAKLQ"
     misc_feature    366..1055
                     /gene="PAQR6"
                     /note="Haemolysin-III related; Region: HlyIII; pfam03006"
                     /db_xref="CDD:427098"
ORIGIN      
        1 gcttagatcc cctcctcctg ctgcagggga tgcacaccca ttgccccgct tctgttttct
       61 gtctcccttc gtctagcctc cagggcaggg agcaggccca caacggctgc aggcagtccg
      121 gcctatacgc caatgagggc ttctgtgccc gccagcccca tggtcactgc gctttgtgct
      181 ctgggctgct gtgctgggac agagtgggat gccggtcaac gtggaggtgc cgggccacca
      241 tgctcagtct caagctgccc caactccttc gcgtccacca ggtccccagg gtgttctggg
      301 aagatggtat catgtctggc taccgccgcc ccaccagctc ggccttggac tgtgtcctca
      361 gctccttcca gatgaccaac gagaccgtca acatctggac tcacttcctg cccacctggt
      421 acttcctgtg gcgcctcctg gcgctggcgg gaggccaggg cttccggtcg gagccctacc
      481 actggccgct gctcgtcttc ctgctgcccg cctgcctcta cccgtttgcg tcgtgctgcg
      541 cgcacacctt cagctccatg tcaccccgcg cgcgtcacat ctgctacttc ctggactacg
      601 gcgcgctcag cctctacagc ctgggctgcg ccttccccta tgccgcctac tccatgccgg
      661 cctcctggct gcacagccgc ctgcaccagc tatttgtgcc cgccgccgca ctcaattctt
      721 tcctgtgcac cggcctctcc tgctactccc ggttccccga gctagaaagc cctgcgctca
      781 gtaagatcct ccgcacggct gccttcacct atccctttct gttcgacaac ctcccgctct
      841 tctatcggct cggactgtgc tggggcaggg gccacagctg tgggcaggag gcactgagca
      901 ccagccacgg ctaccacctc ttctgcgcgt tgctcactgg cttcctcttt gcctcccacc
      961 tgcctgagcg gctggcacca ggacgcttcg attacatcgg ccacagccac cagctattcc
     1021 acatctgtgc agtgctgggc acacacttcc agctggaggc ggtgctggct gatatgggat
     1081 ctcgccgagc ctggctggcc atgcaggaac cgccgctggg cctggcgggc acagtggcca
     1141 cactgggctt ggcagtggcc gggaacctgc tcatcattgc tgctttcaca gcttccctat
     1201 ttcgggctcc cagtacgtgc cccctgctgc agggtggccc gctggagagg aatacgaagg
     1261 ccaaactaca gtgaggcccc agctctgagc ctgccctgga gggaagcaga ggccaggcgc
     1321 ccccccccgc ccccaccccc cccaccctgt gctggggagg agcccagacc caggcctgct
     1381 aagacggggg cacttctgag cctggaacca agaggagtg
//
LOCUS       XM_032615350            2805 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus progestin and adipoQ receptor family
            member 6 (PAQR6), transcript variant X2, mRNA.
ACCESSION   XM_032615350
VERSION     XM_032615350.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2805
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2805
                     /gene="PAQR6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116745042"
     CDS             1070..2104
                     /gene="PAQR6"
                     /codon_start=1
                     /product="membrane progestin receptor delta isoform X2"
                     /protein_id="XP_032471241.1"
                     /db_xref="GeneID:116745042"
                     /translation="MLSLKLPQLLRVHQVPRVFWEDGIMSGYRRPTSSALDCVLSSFQ
                     MTNETVNIWTHFLPTWYFLWRLLALAGGQGFRSEPYHWPLLVFLLPACLYPFASCCAH
                     TFSSMSPRARHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHSRLHQLFVPAAALNS
                     FLCTGLSCYSRFPELESPALSKILRTAAFTYPFLFDNLPLFYRLGLCWGRGHSCGQEA
                     LSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIGHSHQLFHICAVLGTHFQLEAVL
                     ADMGSRRAWLAMQEPPLGLAGTVATLGLAVAGNLLIIAAFTASLFRAPSTCPLLQGGP
                     LERNTKAKLQ"
     misc_feature    1196..1885
                     /gene="PAQR6"
                     /note="Haemolysin-III related; Region: HlyIII; pfam03006"
                     /db_xref="CDD:427098"
ORIGIN      
        1 gcagttggag cacaaactcc agagatggtt ttgatagatg tgaagttcat tgaactgagc
       61 tgctgccttc acaagggtga taggtgaaaa caatatacag atgatcctga acaatatgag
      121 gtcttagggc gctgacccct atgcaagcaa agatctgcac ttgattttac agtctgccct
      181 ctgtatctgc agttccacat ccatgattca accaactggg gaccgtgtag tactgagtac
      241 atatttagtg aaagaaagct gcatataaac gcagttcaaa cctatgttca agggtcaact
      301 attttgaagg ctacattgct ccctgggggt ggtttgcggt tttcagctgg gtcctctgaa
      361 tcagggagaa acttcctcaa tggagaggtg agggtgaacc ttgaaaccag cctctgagtc
      421 ttcaacccca tccctccgca aggactgaca cctcaagtgt gtctggggag tggagaagct
      481 tggtgaaccc ctcgaggttg aaccaacatt taccaaatgc atttgctctg gattctgccc
      541 agcaccaggc gctgagaggc agcgaagcac agtgagaagg ggtttcggag aattcatatt
      601 cagggtttgg attcctctgc ccagcttgag gcagagccac tctcagctgc tgggagagcc
      661 tggaaccctg gagccgtggg gcagcctggt ctgagggggg cgctctgcac caccctggct
      721 gcatcctggc tagggccctg gcctcttccg gccagtctgc tctcagtggg gtggggtcaa
      781 gctgaagggg ttggctgtgc gctggagccc gagtgagctg cctgctaatg gggctgggcc
      841 accccgcaca gctctctgga ggctggacaa ggctgggatt gttctctggc tcccctttgt
      901 ctcccactcc ccgcccaggc ctggcccgcc tgcctgccac tctcttctcc ctcccattgg
      961 cccggctggc aagagccagg gactccaccc gtggagcccg gggcctgccg acccaccagc
     1021 ttaggagcgc ccatcaaact ctgggtcaac gtggaggtgc cgggccacca tgctcagtct
     1081 caagctgccc caactccttc gcgtccacca ggtccccagg gtgttctggg aagatggtat
     1141 catgtctggc taccgccgcc ccaccagctc ggccttggac tgtgtcctca gctccttcca
     1201 gatgaccaac gagaccgtca acatctggac tcacttcctg cccacctggt acttcctgtg
     1261 gcgcctcctg gcgctggcgg gaggccaggg cttccggtcg gagccctacc actggccgct
     1321 gctcgtcttc ctgctgcccg cctgcctcta cccgtttgcg tcgtgctgcg cgcacacctt
     1381 cagctccatg tcaccccgcg cgcgtcacat ctgctacttc ctggactacg gcgcgctcag
     1441 cctctacagc ctgggctgcg ccttccccta tgccgcctac tccatgccgg cctcctggct
     1501 gcacagccgc ctgcaccagc tatttgtgcc cgccgccgca ctcaattctt tcctgtgcac
     1561 cggcctctcc tgctactccc ggttccccga gctagaaagc cctgcgctca gtaagatcct
     1621 ccgcacggct gccttcacct atccctttct gttcgacaac ctcccgctct tctatcggct
     1681 cggactgtgc tggggcaggg gccacagctg tgggcaggag gcactgagca ccagccacgg
     1741 ctaccacctc ttctgcgcgt tgctcactgg cttcctcttt gcctcccacc tgcctgagcg
     1801 gctggcacca ggacgcttcg attacatcgg ccacagccac cagctattcc acatctgtgc
     1861 agtgctgggc acacacttcc agctggaggc ggtgctggct gatatgggat ctcgccgagc
     1921 ctggctggcc atgcaggaac cgccgctggg cctggcgggc acagtggcca cactgggctt
     1981 ggcagtggcc gggaacctgc tcatcattgc tgctttcaca gcttccctat ttcgggctcc
     2041 cagtacgtgc cccctgctgc agggtggccc gctggagagg aatacgaagg ccaaactaca
     2101 gtgaggcccc agctctgagc ctgccctgga gggaagcaga ggccaggcgc ccccccccgc
     2161 ccccaccccc cccaccctgt gctggggagg agcccagacc caggcctgct aagacggggg
     2221 cacttctgag cctggaacca agaggagtgg ctgaggagag agtgcggaga tcagaaggca
     2281 gaggagagga gaggggctgg gaggctggta gagagtagga gggtcaggag ggtgctcttg
     2341 atggggctgg gggaagtgct gagggtctga gaggggaggt gcatgtgttc aggctggagc
     2401 tgctccacct gccatcgaag gctgggacgg ggaggtgttg ggccctttca tctggtccca
     2461 tctctggtgc tcctggagtt tctgctcagc ccaggcaaga actaacatga ctaacccagg
     2521 cctatcctga atgcttatta accaggccag gaggcccgct actgccccca cccccaaacc
     2581 aggcagtacc atctaccgga agctctttgc ctatggcgat gaggctgtct gtcctggtca
     2641 cagccgtgta ctccaggcat ccaggccttt gggatctggt ctatttgggt gtgtcacgga
     2701 tggggcagtg ggttgaggtg ggggagggtg ctgggctaga gaggagaacc ctatttagac
     2761 tttaggaagc caccttcaat gcttctggac tgaggcaggg ataaa
//
LOCUS       XM_032615357            1086 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus progestin and adipoQ receptor family
            member 6 (PAQR6), transcript variant X3, mRNA.
ACCESSION   XM_032615357
VERSION     XM_032615357.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1086
                     /gene="PAQR6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116745042"
     CDS             30..941
                     /gene="PAQR6"
                     /codon_start=1
                     /product="membrane progestin receptor delta isoform X3"
                     /protein_id="XP_032471248.1"
                     /db_xref="GeneID:116745042"
                     /translation="MHTHCPASVFCLPSSSLQGREQAHNGCRQSGLYANEGFCARQPH
                     GHCALCSGLLCWDRVGCRSTWRCRATMLSLKLPQLLRVHQVPRVFWEDGIMSGYRRPT
                     SSALDCVLSSFQMTNETVNIWTHFLPTWFPELESPALSKILRTAAFTYPFLFDNLPLF
                     YRLGLCWGRGHSCGQEALSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIGHSHQL
                     FHICAVLGTHFQLEAVLADMGSRRAWLAMQEPPLGLAGTVATLGLAVAGNLLIIAAFT
                     ASLFRAPSTCPLLQGGPLERNTKAKLQ"
     misc_feature    <450..722
                     /gene="PAQR6"
                     /note="Haemolysin-III related; Region: HlyIII; cl03831"
                     /db_xref="CDD:470885"
ORIGIN      
        1 gcttagatcc cctcctcctg ctgcagggga tgcacaccca ttgccccgct tctgttttct
       61 gtctcccttc gtctagcctc cagggcaggg agcaggccca caacggctgc aggcagtccg
      121 gcctatacgc caatgagggc ttctgtgccc gccagcccca tggtcactgc gctttgtgct
      181 ctgggctgct gtgctgggac agagtgggat gccggtcaac gtggaggtgc cgggccacca
      241 tgctcagtct caagctgccc caactccttc gcgtccacca ggtccccagg gtgttctggg
      301 aagatggtat catgtctggc taccgccgcc ccaccagctc ggccttggac tgtgtcctca
      361 gctccttcca gatgaccaac gagaccgtca acatctggac tcacttcctg cccacctggt
      421 tccccgagct agaaagccct gcgctcagta agatcctccg cacggctgcc ttcacctatc
      481 cctttctgtt cgacaacctc ccgctcttct atcggctcgg actgtgctgg ggcaggggcc
      541 acagctgtgg gcaggaggca ctgagcacca gccacggcta ccacctcttc tgcgcgttgc
      601 tcactggctt cctctttgcc tcccacctgc ctgagcggct ggcaccagga cgcttcgatt
      661 acatcggcca cagccaccag ctattccaca tctgtgcagt gctgggcaca cacttccagc
      721 tggaggcggt gctggctgat atgggatctc gccgagcctg gctggccatg caggaaccgc
      781 cgctgggcct ggcgggcaca gtggccacac tgggcttggc agtggccggg aacctgctca
      841 tcattgctgc tttcacagct tccctatttc gggctcccag tacgtgcccc ctgctgcagg
      901 gtggcccgct ggagaggaat acgaaggcca aactacagtg aggccccagc tctgagcctg
      961 ccctggaggg aagcagaggc caggcgcccc cccccgcccc cacccccccc accctgtgct
     1021 ggggaggagc ccagacccag gcctgctaag acgggggcac ttctgagcct ggaaccaaga
     1081 ggagtg
//
LOCUS       XM_032615371            1442 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 79 (TMEM79), mRNA.
ACCESSION   XM_032615371
VERSION     XM_032615371.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1442
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1442
                     /gene="TMEM79"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116745054"
     CDS             217..1404
                     /gene="TMEM79"
                     /codon_start=1
                     /product="transmembrane protein 79"
                     /protein_id="XP_032471262.1"
                     /db_xref="GeneID:116745054"
                     /translation="MTEPETLALLEVKGPEALEKSPPQALVPNGRKLEGEDGVESPGA
                     ESSRAGPSAGSPTAGEGTEDGLDSTVSEAATLPWGTGPQPSAPFSDPPGWRNIEPEPL
                     KSEPPTKLEELPEDDANLLPEKVARAFVPIDLQCIERRPQEDLIVCCEASEGERRQTF
                     LPTQATHPEPPERKWAEAVVRPPGYSCGCCRGRGGHEGLRAMASVGAALILFPCLLYG
                     AYAFLPFDAPRLPTMSSRLIYTLRCGVFATFPIVLGILVYGLSLLCFSALRPFGEPRR
                     EVEIHRRYVAQSVQLFILYFFNLAVLSTYLPQDTLKLLPLLTGLFAISRLIYWLTFAV
                     GRSFRGFGYGLTFLPLLSMLVWNLYYMFVVEPERMLTASESRLDYPDHARSASDYRPR
                     SWG"
     misc_feature    <316..>570
                     /gene="TMEM79"
                     /note="hypothetical protein; Provisional; Region:
                     PHA03169"
                     /db_xref="CDD:223003"
ORIGIN      
        1 attcagcagg gcggggcctg cccctttaaa ctgggccgca cctgctctgg tcagactggt
       61 ttggagacac aggtaaaggg agggagactg agaggaatac tcgcagagcc agcagggagc
      121 tgggcagctc cttcccggac actggggacc ctctacctct ctccagatgg aaaggtgaca
      181 tgaccttgcg gtagacccca gaagtgaagc cccaggatga cagaacccga gaccctggcc
      241 ctgctggaag tgaaggggcc agaggccctg gagaagagcc caccgcaggc tttggtcccc
      301 aatggccgga agctggaagg ggaagatggg gttgagtccc ctggagctga gtcctccaga
      361 gcgggacctt cagctgggtc tcccacagcc ggagaaggga cggaggatgg tctagacagc
      421 acagtaagtg aggctgccac cttgccctgg gggactggcc cccagcccag tgccccgttc
      481 tcagatcccc ctggctggag gaacattgag cctgagcccc ttaagtcaga gccacccacc
      541 aagctagagg agttgcccga agatgacgcc aacctgctgc ctgagaaggt ggcccgggcc
      601 ttcgtgccca tcgacctaca gtgcattgag cggcggcccc aggaagacct cattgtgtgc
      661 tgtgaggcca gcgagggtga gcgccgccag accttcctgc ccacccaggc cacccaccct
      721 gagcccccgg agcgcaagtg ggccgaggca gtggtgaggc cgcctgggta ctcctgtggg
      781 tgctgcaggg gacgtggagg ccatgagggg ctgagggcca tggcctcggt gggagccgcc
      841 ctcatcctct tcccctgctt gctctatggg gcatatgcct tcctgccctt cgatgcccca
      901 cgcctgccga ccatgagttc ccgcctcatc tacacgctgc gctgcggggt ctttgccacc
      961 ttccccattg tactggggat cctggtgtac gggctgagcc tgttgtgctt ttctgccctg
     1021 cggccctttg gggagccacg gcgtgaggtg gagatccacc ggcgatacgt ggcccagtcg
     1081 gtccagctct tcatcctcta cttcttcaac ctggccgtgc tttccaccta cctgccccaa
     1141 gacaccctca aactgctccc tctgctcact ggtctcttcg ccatctcccg gctgatatac
     1201 tggctgacct ttgccgtggg ccgctccttc cgaggctttg gctacggcct gacattcctg
     1261 cccctgctgt ccatgctggt gtggaacctc tactatatgt tcgtggtgga gcccgaacgc
     1321 atgctcactg cctccgagag ccgcctggac taccctgacc acgcccgctc agcctcagac
     1381 tacaggcctc gctcctgggg ctaagccgcc ccaccccctt gctcccagcc ctggtacctg
     1441 gg
//
LOCUS       XM_032615385            5869 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mex-3 RNA binding family member A
            (MEX3A), mRNA.
ACCESSION   XM_032615385
VERSION     XM_032615385.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5869
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5869
                     /gene="MEX3A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 91%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116745057"
     CDS             1..1563
                     /gene="MEX3A"
                     /codon_start=1
                     /product="RNA-binding protein MEX3A"
                     /protein_id="XP_032471276.1"
                     /db_xref="GeneID:116745057"
                     /translation="MPSLVVSGIMERNGGFGELGCFGGSAKDRGLLEDERALQLALDQ
                     LCLLGLGEPPAPTAGEDGGGGGGGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQ
                     PPTAPKGASDAKLCALYKEAELRLKGSSNTTECVPVPTSEHVAEIVGRQGCKIKALRA
                     KTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAAFGVAP
                     ALPGQVTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDPVFEITGAPGN
                     VERAREEIETHIAVRTGKILEYNNENDFLAGSPDAALDSRYSEAWRVHPPGCKPLSTF
                     RQNSLGCIGECGVDSGFEAPRLGEQGGDFGYGGYLFPGYGVGKQDVYYGVAETSPPLW
                     AGQENATPTSVLFSSASSSSSSSAKARAGPPGAHRSPAASAGPELAGLPRRPPGEPLQ
                     GFSKLGGGGLRSPGGGRDCMVCFESEVTAALVPCGHNLFCMECAVRICERTDPECPVC
                     HITATQAIRIFS"
     misc_feature    394..612
                     /gene="MEX3A"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in the family of MEX-3 RNA-binding proteins; Region:
                     KH-I_MEX3_rpt1; cd22423"
                     /db_xref="CDD:411851"
     misc_feature    order(421..426,430..438,442..456,460..468,475..477,
                     493..513,595..600,607..612)
                     /gene="MEX3A"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:411851"
     misc_feature    661..876
                     /gene="MEX3A"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in the family of MEX-3 RNA-binding proteins; Region:
                     KH-I_MEX3_rpt2; cd22424"
                     /db_xref="CDD:411852"
     misc_feature    order(697..699,703..711,715..729,736..741,748..750,
                     766..786,871..873)
                     /gene="MEX3A"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:411852"
     misc_feature    1402..1557
                     /gene="MEX3A"
                     /note="RING finger, HC subclass, found in RNA-binding
                     proteins of the evolutionarily-conserved MEX-3 family;
                     Region: RING-HC_MEX3; cd16518"
                     /db_xref="CDD:438181"
ORIGIN      
        1 atgcctagtc tagtggtatc tggaataatg gaaagaaatg ggggctttgg agaactagga
       61 tgtttcgggg gaagcgctaa ggaccgaggg ctgctggaag acgagcgcgc ccttcagctg
      121 gctctcgatc aactctgcct cctgggtttg ggggagcccc ccgcccccac ggcgggcgag
      181 gacgggggag gtgggggggg cggcgccccc gcgcagccgg ccgccccccc gcagccggcc
      241 ccgccgccgc cgcccgcggc gcccccggcc gccccgacgg cggcccccgc ggcgcagacg
      301 ccccaacccc ccaccgcccc caaaggggcc agcgacgcca agctctgcgc tctctacaaa
      361 gaggccgagc tgcgcctgaa gggcagcagc aacaccaccg agtgtgtacc cgtgcccacc
      421 tccgagcacg tggccgagat cgtgggcagg caaggctgca agattaaggc tctgagggcc
      481 aagaccaaca cctacatcaa gacgccggtg cgaggcgagg agccagtgtt catggtgacc
      541 gggcggcggg aggacgtggc cacagcccga cgcgaaatca tctcagcagc tgagcacttc
      601 tccatgatcc gggcctcccg caacaagtcg ggcgccgcct ttggcgtggc gcctgctctg
      661 cccggccaag tgactattcg tgtgcgggtg ccctaccgcg tggtggggct ggtggtgggc
      721 cccaaggggg caaccatcaa acgcatccag cagcagacca acacgtacat tatcacacca
      781 agccgagacc gagacccggt gttcgagatc accggtgccc cgggcaacgt ggagcgtgcg
      841 cgcgaggaga tcgagacgca catcgcggtc cgcacgggca agatcctcga gtacaacaat
      901 gaaaacgact tcctggctgg gagccccgac gccgcgcttg atagccgcta ctcagaggcc
      961 tggcgggtgc acccgcctgg ctgcaagccc ctctccacct tcaggcagaa cagtctgggc
     1021 tgcatcggcg agtgtggagt ggactctggt tttgaggccc cgcgcctggg cgagcaggga
     1081 ggggactttg gctacggcgg gtacctgttt cccggctacg gcgtgggcaa gcaggacgtg
     1141 tattacgggg tggcggagac tagcccccct ctctgggcgg gccaggagaa cgccacgccc
     1201 acctcggtgc tcttctcttc cgcctcttcc tcctcctcct cttccgccaa ggcccgcgcc
     1261 gggcccccgg gcgcgcaccg ctctccagcc gcctctgcgg ggcctgagct ggcaggactc
     1321 ccgagacgcc cgccgggaga gccgctccag ggcttctcta aacttggtgg gggcggcctg
     1381 cggagccccg gcggcgggcg ggattgcatg gtgtgcttcg agagtgaggt gactgccgca
     1441 ctcgtgccct gcggacacaa cctgttctgc atggagtgtg cagtacgcat ctgcgagagg
     1501 acggacccgg agtgtcccgt ctgccacatc acagccacgc aagccatccg aatattttcc
     1561 taagccccct gccccatgcc tcctggggcc acctcccagg ggcccttctt ggagctgtgt
     1621 tccactaggg ccttttggaa atcagtgatt tgaggggcaa ggtgcttaga gatactcgct
     1681 ctctggggag gggggagggg aggcgatggt ggttggaggg tggaccactt tcagagcctc
     1741 tggtcaccct gtcctggaaa ggttgggagg gggccaggcc ggaaatttta ctagagttac
     1801 aactctgata cctcaacaca cccttcagtc tggaagcagc taagagaaac ttttgttttg
     1861 ccagaggtgg ccgctaaggt atcctgaccc cctctccacc tacccttatg tgtgtcacac
     1921 taccctttcc tctgtggagg ggatggggag agggagaggg agaattacca tctgtatcta
     1981 gaggtgctct aacaatcccc aagccctctg gtcttgacct ctgacctcca accacgaccc
     2041 tttagaccct ccaccgccat atcctgtttg ggaatctgtt cctgggtttc cagcagtata
     2101 agggggttgg ggcccttttg gaagtcagga tagattttct aagggggaag gggaggaagt
     2161 atgtcaacca ataaagggct cagaactcat ctatccccac aaagctgggc tagaggaatc
     2221 tggagagggg gtgcccctct ctgccccttg cagcttttcc ctccactctc tcctccccat
     2281 ctttcttccc tttgggtttt cctcactcct ttgtcctctc ccccaactct cctcttggct
     2341 tcccctcgct ggctgtcaca accagccctg tcttgatctt tctctttctt cctttcttcc
     2401 ccctccctcc tgctccttcc agcccagctt tggggacacc atccccctgg ggagaattag
     2461 ggggaagaac agtttgatgg tcccccctaa ttcctcttct ggcatccgga ggccctctct
     2521 cctactcctc caaagaaaca cctcaaattc ttgatggaat gtatccccgt tctcagtgaa
     2581 aatttgagga ggggaccaat actgggttac ataaagggtc aaacctccac ctttatcatc
     2641 ttggggcatt acatttaggg aacagttctt gggctggatt ttctggtggt gggaggggag
     2701 agccagggta gtgtgtctgc agttttgagc aggaaagggc ctgaggccat aggagaggct
     2761 gctgggggga ggggctgctc ctcctcccct gcagtgcccc actccgtgcg cccctctctg
     2821 gacctgacct gaacccttat tagcacgcta atcatgaagt ctgtgtctca ctcattgtgg
     2881 ttgaggagag agaccaggtc ttcagacagg ggtcagtcca gagccaagca ggactggggt
     2941 atagcagtat agcagggcct gctctgagaa tcatgtatga ttttaggcct tgtcccccca
     3001 ttgctgcttc cctactgctc atctggggca gccaccagcc tcccgccctc ctgggttccg
     3061 ctggccgggc caggagagga tgggagatgg gagtcccagg ggggtcctag gagattcttg
     3121 tatatagtag ggtgggactc ttctaagtga tctctgagca cttaagctcc ggagtcccat
     3181 tcttcctgga tggagagggg gtgcagggat gggggtacag aggggatttc ctcctctcct
     3241 tcctcctgtt gtgaattaac tcacctctcc tcaaccttcc cctccagacc accagccagg
     3301 gaggggagcg gaaggaggtc acagccagga acactggcct gtgacaactt ccctccttcc
     3361 cgccaatgtg agccatcctg agatgtctgt acaatagaaa ccaaaccaaa tgggcacccc
     3421 tcggtcgccg agggggggtg gggagggggg tgggaagatg ggatgtctgt ctgtcgatcc
     3481 ccctccccct ctccactcta cccacaaagg cagaagactg ttacactagg gggctcggaa
     3541 aattcaatcc cactcttact aattgagcca aacctagaaa caaacgcaaa acacatagtg
     3601 agagacagga tagaggagag aaagagagcg tgagagggag cgagataggt gaccaacaca
     3661 gaggagagaa aacaaaaata gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa agcagttctt
     3721 tataatttaa tattctattt taataaaggc gtttattacc gtataaatgt agcaaagaac
     3781 ctgggctaat atgaaaaaaa aagacttttt attaggtaat ttattatatg aaaaggatat
     3841 tttattttat gataaagtga tccttaaaaa aaataaaaaa actttagaag gtttagaata
     3901 tatgtaggga gagaagaaaa aaatacattt gtattcagag ttaaatctta aaaaagtgtt
     3961 tttaatatat gttcgggttt acgttccttt ttccccccac tttttttttg gggaggaatg
     4021 tcatttgctt ttccggggga gcatcctggg atggatcgtg gagacagggg ctaggggaac
     4081 ttggtccctc tggggccctg caagtagatt ggatttcact cccggggctc cctctcccct
     4141 ctacccctcc ccctcggggg agccggcaga gccaaacaaa gaaagggatt aaggagaaag
     4201 gaagaagctg gaggactgag gactgaggat cctggggtgt cccccccttc ccctgccctg
     4261 tcccaggggc gagtgagaag gggaagtcca gaactgaggc ctagcaggcc tacgggaacc
     4321 ctcagagagg tgtgagattt aagagaaata gttttttttg tttgtttgtt tttttaacca
     4381 aaaatgagag agagagaaga aaaagaaaga aaccgagggg tttaaaagaa aagaatacta
     4441 caaaataata attataataa taataataat tcaaatttat ttcatataat cctagagaaa
     4501 aagagaaaga attactagtt acttagtaga tgatattcag atagcttaaa gtttagtagc
     4561 attgagggcc cctgggtcca gtagaatgta taaaagtcat aacgaaaagg aaaatagagg
     4621 agggaagtgg ctgagtccac cctgagccgc tccatcttca ggtatcaggg tgggagcagg
     4681 ttgctaggta aggttaggag cttccttcca gtctgctggg gttgattctg agaatccttg
     4741 gatttttaaa ttataggaca aatagataag gggctcagtt cccagggtct ttgaaaggat
     4801 gaacaatggt catttcaacc agaggagggc tgggctaggg acagcagagg agggagagca
     4861 cattcacctg cacccctgct ctgcacccca gtacctgagg gcctggccat cctggccttc
     4921 cctgtctgtt gggcagccct tactccaaat atgtcctctt ggggttctct gggaggatgg
     4981 agactgccca gctccaaccc tcctgaggca acttctcccg ggcctgagga agtccttctt
     5041 gaagtataac ctcaatccac tccacctcag gttgattcaa gagcctggta ggtcatttca
     5101 ccaacagaca cacatgcaca tgcttccttc tcagagcttc aaggggactg agggggtggt
     5161 ctgtccccct tccttgttcc cacccaatat tctacttagc ttctgacctc catggcagca
     5221 ggtggaggaa ccaactcgat aatcgttctc ctttaaagct gcactgtgct ttacaggttt
     5281 gcaaaagtgc tttattatct catagaagtt agattccaag aaggacttcc cacccactgg
     5341 ggtagagcag agatgctgcc cttaaaggcc tgggagaact ggtccccaag ggtacaaagg
     5401 cagggggagg gcagcagcga ctttgggtga ccctgaccct aacgctgtgt tctagtccac
     5461 ttccatctgt aagtgttcag gtaggggtca tccactgtgc cctggcccca gggcacatcg
     5521 ccctccccac agaaaactgg ggagcttggc tttttcgctt gtgagaaatc aacttgtttt
     5581 ttaagcactt gccttctacc aaccccagct tgcaatcagg tcgggcccct ccctcctatc
     5641 caagggggtg tggaggcccc ttggttcttg gcaagaagag cctgctccat gacaccaatg
     5701 actgtcatgc ccctccctgg ccctagaccc caaacacaca tctccctctc cccagtttac
     5761 tcttctcacc ccacctaggg acagatatcc cccctgctct ttttgtccta gaaacccccg
     5821 ctagtttggg aaggtagcgt ctggggtggg gagggcttcc ccttccccg
//
LOCUS       XM_032615398            1000 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytidine deaminase (CDA), mRNA.
ACCESSION   XM_032615398
VERSION     XM_032615398.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1000
                     /gene="CDA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 Proteins, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116745061"
     CDS             205..645
                     /gene="CDA"
                     /codon_start=1
                     /product="cytidine deaminase"
                     /protein_id="XP_032471289.1"
                     /db_xref="GeneID:116745061"
                     /translation="MAQKSPSPALEPEHVQRLLLSCREAKKSAYCPYSRFPVGAALLT
                     GDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKEFRAIAISSDLQDDFISPCGAC
                     RQVMREFGTDWAVYMTKPDGTYVVRTVQELLPASFGPEDLQKIQ"
     misc_feature    250..630
                     /gene="CDA"
                     /note="Cytidine deaminase [Nucleotide transport and
                     metabolism]; Region: Cdd; COG0295"
                     /db_xref="CDD:440064"
ORIGIN      
        1 tgggacacac accacaccct ctgtccccaa accaaggagg gctcctctcc ctcacctggc
       61 cccgcccagc atccccagag gcacgcacct gggagactct aggcagggac acaccccggg
      121 ggaggagctg ctgtcgcggt ggggcccagc ccacactggc tgggagttcc cgttccactc
      181 ctccgcgggc cccaggggac cgacatggcc cagaagagtc ccagccccgc cctggagccc
      241 gagcacgtcc agcggctgct gctctcctgc cgggaggcca agaagtccgc ctactgcccc
      301 tacagtcgct tccccgtggg ggctgccctc ctcaccgggg acgggaggat cttctccggg
      361 tgcaacatag aaaatgcctg ctacccactg ggcgtctgtg ctgaacgaac cgccatccag
      421 aaggccatct cagaggggta caaagagttc agggcaattg ctatctccag tgacttgcaa
      481 gatgatttta tctccccatg tggggcctgc cggcaggtca tgagagagtt tggcactgac
      541 tgggctgtct acatgaccaa gccggatggc acgtacgttg tcaggacagt ccaggagctg
      601 ctgcctgcct cctttgggcc cgaggacctg cagaagatcc agtgagggac ggggaacacc
      661 caccgcctgg gagaccctgg gttcccacac gtgcttaagg ggacagccac ccagagaact
      721 tcatgaagat gtactcacaa acctggggac gcctgcctag tggtccccaa ccccacaggc
      781 gctgggcaga gatgactttt ccaaattaca ctcaagcagt ggggcctaca gcccctcctt
      841 gcaaccctcc ttgtcctccc caggactcag agcgcccccg tccctctctt ccgtcctgcc
      901 aagtctgtgc tgtcctgctt ggttctatcc tatctaaggt tctatcctgc tctgagcgac
      961 ttttctaatt ataaacatta cagaacatac tgattcggga
//
LOCUS       XM_032615414            4335 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 17 (KIF17),
            transcript variant X1, mRNA.
ACCESSION   XM_032615414
VERSION     XM_032615414.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4335
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4335
                     /gene="KIF17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116745064"
     CDS             46..3228
                     /gene="KIF17"
                     /codon_start=1
                     /product="kinesin-like protein KIF17 isoform X1"
                     /protein_id="XP_032471305.1"
                     /db_xref="GeneID:116745064"
                     /translation="MASESVKVVVRCRPMNQREWELNCQPVVTVDSARGQCFIQNPGA
                     VDQPPKQFTFDGAYYMDHFTEQIYNEIAYPLVEGVTEGYNGTIFAYGQTGSGKSFTMQ
                     GLPDPPCQRGIIPRAFEHIFESVQCAENTKFLVRASYLEIYNEDVRDLLGTDTKQKLE
                     LKEHSEKGVYVKGLSMHTVHSVAQCERVMETGWKNRSVGYTLMNKDSSRSHSIFTISI
                     EIYAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISA
                     LVDGRCKHIPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANRAKN
                     IRNKPRINEDPKDALLREYQEEIKKLRAILAQQMSPSTLSALLNNQVPPNPVQIEEKL
                     LPPSVMQHDTEAEKQLIREEYEERLARLRADYEAEQESRARLEEDITAMRNSYDVKLS
                     TLEENLRKETEAVLKAEVLYKAEVMSRAEFASSSEYSPTFQYKMAVKPEIYSMPDTLP
                     SEGVFKTEVSSRFEELPEVEASKSEVSLGSDESSTLEEHFISTAFPGPREPSSLEVPV
                     PEVEAPSGHFLDEDVSREATEPLWEEEPFLQGEEPHLRALELLPGLHKPLAVEAKLAR
                     LSSTGAGLDVPQADVPEVTTQHPSRTDLLEPGDLRSEAEAADDLLPRTRTQPAKGTGR
                     KALNLPTFVERESDLPASGPDLREVDLGPGVTEEVVLAAEPSVGAEGEAQVALEAPHQ
                     SLLAKTTARRDSMEVAVLTDDLLPTVDQQEVLARLQLLEQQVVGGEQAKNKDLKEKHR
                     RRKRYADERKKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEKMQRKLRAAE
                     VEIKDLQSEFELEKIDYLATIRRQERDFMLFQQLLEQVQPLIRRDCNYSNLEKIRRES
                     CWDEDNGFWKIPQPIIIKTSLPVAVSTGLQNRSARKNSTADNGEPGTQDEDRYRLMLS
                     RSDSENIASNYFRPKRATQILSADPMKSLAYRSSPPGLSSPLGNSSAIPPTQAPEMPQ
                     PRPFRLESLDIPFTKARRKKSKSSFGGEPL"
     misc_feature    55..1050
                     /gene="KIF17"
                     /note="Myosin and Kinesin motor domain; Region:
                     Motor_domain; cl22853"
                     /db_xref="CDD:473979"
     misc_feature    order(82..87,316..339,640..645,763..780)
                     /gene="KIF17"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:276814"
ORIGIN      
        1 ggcgtccacg tcgggccgca ccccggggac ccccgccgcg gcgctatggc ctcggagtcg
       61 gtgaaggtgg tggtgcgctg ccgccccatg aaccagcggg agtgggagct gaactgccag
      121 cctgtggtga cggtggactc cgcgcgcggc cagtgcttca tccagaaccc gggcgccgtc
      181 gaccagcccc ccaagcagtt cactttcgac ggcgcctact acatggacca ctttaccgag
      241 cagatctaca acgaaatcgc ctacccgctg gtggagggcg tcaccgaggg ctacaacggc
      301 accatctttg cctacggcca gacaggcagc gggaagtcct tcaccatgca gggcctgcct
      361 gacccaccct gccaaagagg catcatccct agggccttcg agcatatttt cgagagcgtc
      421 cagtgtgcag agaacaccaa gttcctggtc cgggcctcct acctggagat ctacaatgaa
      481 gatgtccgtg acctgctggg tactgacacc aagcagaagc tggagctgaa ggagcactcg
      541 gagaaggggg tgtacgtgaa ggggctttcc atgcacacgg tgcacagtgt ggcccagtgc
      601 gagcgcgtca tggagacggg ctggaagaac cgctcggttg gctacaccct gatgaacaag
      661 gactcttccc gctcccactc catcttcacc atcagcatcg agatctacgc ggtggatgag
      721 cggggcaagg accacctccg ggcaggcaag ctgaacctgg tggacctggc aggcagcgag
      781 cggcagtcca agacgggtgc cacgggggag cggctcaagg aggccaccaa gatcaacctg
      841 tcgctgtcgg cgctgggcaa cgtcatctcg gccctggtgg acgggcgctg caaacacatc
      901 ccctaccggg actcgaaact gacgcggctg ctgcaggact cgctgggcgg caacaccaag
      961 acactgatgg tggcctgcct gtcgcccgct gacaacaact acgatgagac cctcagcacg
     1021 ctgcgctatg ccaaccgagc caagaacatc aggaacaagc ctcgcatcaa cgaggacccc
     1081 aaggatgccc tcctgcgcga gtaccaggag gagatcaaga agctcagggc gattctggct
     1141 cagcagatga gccccagcac cctgtcagcc ctgctgaaca atcaggttcc cccaaacccc
     1201 gtccagattg aagagaagct gttgcccccg tctgtgatgc agcatgacac ggaggccgag
     1261 aagcagctga tccgggagga gtacgaagag cgcctggccc ggttgagggc cgactacgag
     1321 gcagagcagg agtccagggc ccggctggag gaggacatca ctgccatgcg caactcgtac
     1381 gatgtgaagc tgtccacact ggaggagaac ctgcgcaagg agacagaggc tgtcctgaag
     1441 gcagaagtcc tctacaaggc cgaggtcatg tccagggctg agttcgccag cagttctgag
     1501 tactcaccta ctttccagta caagatggcc gtgaaacccg agatctactc catgcctgac
     1561 accctgccca gtgagggtgt ctttaagact gaggtttctt ccaggtttga ggaactgccc
     1621 gaggtggagg cctccaagtc ggaggtttct cttgggtccg atgagtcttc cacgctcgaa
     1681 gaacatttca tctccacggc tttccctggg cccagggagc cctccagcct ggaggtccct
     1741 gtgcccgagg tggaggcccc gagtggacac ttcctagatg aggatgtcag ccgggaggcc
     1801 acggagcccc tgtgggagga ggagcccttc ctccagggag aagagcccca cctgagggcc
     1861 ctggagctcc ttccgggcct gcacaagcca cttgccgtgg aagccaagct ggccaggctc
     1921 tcctccacgg gggccgggct ggacgtgccc caggcggacg tacccgaggt caccacgcag
     1981 cacccctccc ggacagatct gctggagcct ggtgacctca ggtctgaagc tgaggcggcc
     2041 gacgacctcc tgcccaggac tagaacacaa ccggccaagg gcactgggag aaaggcttta
     2101 aatctgccca catttgtgga gagggaaagc gatctgccgg cttctggacc tgatctcagg
     2161 gaggttgacc tgggcccggg agtgaccgag gaggtggtgt tggcagcaga gcccagtgtg
     2221 ggagccgagg gtgaagccca ggtggccttg gaggctccgc atcagtctct gctggccaag
     2281 acaactgcga gaagggacag tatggaggtg gcagtgctga ccgatgacct actgcccact
     2341 gtggaccagc aggaggtgct tgcccgcttg cagctgttgg agcagcaggt ggtcgggggc
     2401 gagcaggcca agaacaagga cctgaaggag aagcacaggc ggcggaagcg gtatgcagac
     2461 gagcgcaaga agcagttggt ggcggccctg cagaactcag acgaggacag cggggactgg
     2521 gtgctgctca acgtctacga ctccatccag gaggaagtga gggccaagag caagctgctg
     2581 gagaagatgc agaggaagct tcgggcggca gaggtggaga tcaaagatct gcagtcagag
     2641 tttgagctag agaagataga ttacttggcc accatccgtc ggcaggaacg tgactttatg
     2701 ctcttccagc agctcttgga gcaggtgcag cccctgattc gccgggactg taactatagc
     2761 aacctggaga agataaggcg cgagtcctgc tgggatgagg ataatggctt ctggaagatc
     2821 ccccagccca tcatcataaa aaccagcctc ccagtagcag tttcaacagg gctacagaac
     2881 agatcagccc gcaaaaactc cacagcggac aatggtgaac caggcacgca ggatgaagac
     2941 cgctacaggc tgatgctcag tcggagtgac agtgaaaaca tcgccagtaa ctacttccgg
     3001 cccaagcggg ccacccagat cctcagtgcg gatcccatga agagcctcgc atatcgcagc
     3061 tcgccgccag gcctcagctc cccacttggc aacagctctg ccatcccacc cacccaggcc
     3121 cctgaaatgc cccagcctcg gcccttccgc cttgagtccc ttgacatccc cttcaccaag
     3181 gccaggcgta agaaaagcaa aagcagcttt ggcggtgagc ctctgtgaac acattgcctg
     3241 ctgctgccct gcctttgggc tctgtgagac tgccaggccc ttccggggca ggcccagcta
     3301 ggtctcctcc cacctgcccc ccacagtact gggggcaccc gagggggccc tggccctggg
     3361 aaagcactgt cccctccctg ctacccagag agcccacgct gcccagggca tgagctcctc
     3421 ggagactgga ccatccttgg agagacctgc tccggctctc cacgccacgt cagcgttttc
     3481 atctgccctc cactgtgccc accagcattg tcctgtgcct ccatgggctc agaaacctca
     3541 gctcagcctc aaggccttca ctagcagccc gattgagtgg gacagtgact tccgcatggg
     3601 tcaagctcaa tgtcttggcg atggaaaatt gtgcctccat ctactaggcc ccgcttggtg
     3661 aggaagccct gagggacggg cacaggagtc ctggagcagc tgttcccaca ctgcctacgc
     3721 tcagctggtc tgcggcgcag aggccactcc acgttaagct gccctaataa actgccttta
     3781 gctgctgaac tgcccttctc tgatcctctg atagcatcac tggggcccct cgctgccgct
     3841 gcctggtctt catggggaag ctctttctgg agcagggatt cttaactgcc tgtaggctcc
     3901 agggtctctg caatcccctg taatttgggg ctggggcctt gttcctagtc gaatctgtcc
     3961 tgggccagtg aagaccgagg aggtggcccg agttgacgcc gccactgccc cagatcctgt
     4021 cctgaacgcg acggcccaga ccaggacgac taggttgaag aggcgggacg cacacttctg
     4081 tcccaagctc cggcgggaag cgggttctgg gcgctaggcg gaagcccggg atgggcggaa
     4141 ccccgggatg ggcggaacca aggggctagt aaccctgttg attggtcgcg gcagcagagc
     4201 tgtctctcta ggattgagcc ttttcctttg gagaggcgga gccgcgtgcc ccttccacca
     4261 ataggattca gagtatccgc ctcctacggt tcacttccgg ccgcgctccc cgcccctcac
     4321 catccgagca gcggc
//
LOCUS       XM_032615424            5479 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 17 (KIF17),
            transcript variant X2, mRNA.
ACCESSION   XM_032615424
VERSION     XM_032615424.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5479
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5479
                     /gene="KIF17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116745064"
     CDS             46..3228
                     /gene="KIF17"
                     /codon_start=1
                     /product="kinesin-like protein KIF17 isoform X1"
                     /protein_id="XP_032471315.1"
                     /db_xref="GeneID:116745064"
                     /translation="MASESVKVVVRCRPMNQREWELNCQPVVTVDSARGQCFIQNPGA
                     VDQPPKQFTFDGAYYMDHFTEQIYNEIAYPLVEGVTEGYNGTIFAYGQTGSGKSFTMQ
                     GLPDPPCQRGIIPRAFEHIFESVQCAENTKFLVRASYLEIYNEDVRDLLGTDTKQKLE
                     LKEHSEKGVYVKGLSMHTVHSVAQCERVMETGWKNRSVGYTLMNKDSSRSHSIFTISI
                     EIYAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISA
                     LVDGRCKHIPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANRAKN
                     IRNKPRINEDPKDALLREYQEEIKKLRAILAQQMSPSTLSALLNNQVPPNPVQIEEKL
                     LPPSVMQHDTEAEKQLIREEYEERLARLRADYEAEQESRARLEEDITAMRNSYDVKLS
                     TLEENLRKETEAVLKAEVLYKAEVMSRAEFASSSEYSPTFQYKMAVKPEIYSMPDTLP
                     SEGVFKTEVSSRFEELPEVEASKSEVSLGSDESSTLEEHFISTAFPGPREPSSLEVPV
                     PEVEAPSGHFLDEDVSREATEPLWEEEPFLQGEEPHLRALELLPGLHKPLAVEAKLAR
                     LSSTGAGLDVPQADVPEVTTQHPSRTDLLEPGDLRSEAEAADDLLPRTRTQPAKGTGR
                     KALNLPTFVERESDLPASGPDLREVDLGPGVTEEVVLAAEPSVGAEGEAQVALEAPHQ
                     SLLAKTTARRDSMEVAVLTDDLLPTVDQQEVLARLQLLEQQVVGGEQAKNKDLKEKHR
                     RRKRYADERKKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEKMQRKLRAAE
                     VEIKDLQSEFELEKIDYLATIRRQERDFMLFQQLLEQVQPLIRRDCNYSNLEKIRRES
                     CWDEDNGFWKIPQPIIIKTSLPVAVSTGLQNRSARKNSTADNGEPGTQDEDRYRLMLS
                     RSDSENIASNYFRPKRATQILSADPMKSLAYRSSPPGLSSPLGNSSAIPPTQAPEMPQ
                     PRPFRLESLDIPFTKARRKKSKSSFGGEPL"
     misc_feature    55..1050
                     /gene="KIF17"
                     /note="Myosin and Kinesin motor domain; Region:
                     Motor_domain; cl22853"
                     /db_xref="CDD:473979"
     misc_feature    order(82..87,316..339,640..645,763..780)
                     /gene="KIF17"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:276814"
ORIGIN      
        1 ggcgtccacg tcgggccgca ccccggggac ccccgccgcg gcgctatggc ctcggagtcg
       61 gtgaaggtgg tggtgcgctg ccgccccatg aaccagcggg agtgggagct gaactgccag
      121 cctgtggtga cggtggactc cgcgcgcggc cagtgcttca tccagaaccc gggcgccgtc
      181 gaccagcccc ccaagcagtt cactttcgac ggcgcctact acatggacca ctttaccgag
      241 cagatctaca acgaaatcgc ctacccgctg gtggagggcg tcaccgaggg ctacaacggc
      301 accatctttg cctacggcca gacaggcagc gggaagtcct tcaccatgca gggcctgcct
      361 gacccaccct gccaaagagg catcatccct agggccttcg agcatatttt cgagagcgtc
      421 cagtgtgcag agaacaccaa gttcctggtc cgggcctcct acctggagat ctacaatgaa
      481 gatgtccgtg acctgctggg tactgacacc aagcagaagc tggagctgaa ggagcactcg
      541 gagaaggggg tgtacgtgaa ggggctttcc atgcacacgg tgcacagtgt ggcccagtgc
      601 gagcgcgtca tggagacggg ctggaagaac cgctcggttg gctacaccct gatgaacaag
      661 gactcttccc gctcccactc catcttcacc atcagcatcg agatctacgc ggtggatgag
      721 cggggcaagg accacctccg ggcaggcaag ctgaacctgg tggacctggc aggcagcgag
      781 cggcagtcca agacgggtgc cacgggggag cggctcaagg aggccaccaa gatcaacctg
      841 tcgctgtcgg cgctgggcaa cgtcatctcg gccctggtgg acgggcgctg caaacacatc
      901 ccctaccggg actcgaaact gacgcggctg ctgcaggact cgctgggcgg caacaccaag
      961 acactgatgg tggcctgcct gtcgcccgct gacaacaact acgatgagac cctcagcacg
     1021 ctgcgctatg ccaaccgagc caagaacatc aggaacaagc ctcgcatcaa cgaggacccc
     1081 aaggatgccc tcctgcgcga gtaccaggag gagatcaaga agctcagggc gattctggct
     1141 cagcagatga gccccagcac cctgtcagcc ctgctgaaca atcaggttcc cccaaacccc
     1201 gtccagattg aagagaagct gttgcccccg tctgtgatgc agcatgacac ggaggccgag
     1261 aagcagctga tccgggagga gtacgaagag cgcctggccc ggttgagggc cgactacgag
     1321 gcagagcagg agtccagggc ccggctggag gaggacatca ctgccatgcg caactcgtac
     1381 gatgtgaagc tgtccacact ggaggagaac ctgcgcaagg agacagaggc tgtcctgaag
     1441 gcagaagtcc tctacaaggc cgaggtcatg tccagggctg agttcgccag cagttctgag
     1501 tactcaccta ctttccagta caagatggcc gtgaaacccg agatctactc catgcctgac
     1561 accctgccca gtgagggtgt ctttaagact gaggtttctt ccaggtttga ggaactgccc
     1621 gaggtggagg cctccaagtc ggaggtttct cttgggtccg atgagtcttc cacgctcgaa
     1681 gaacatttca tctccacggc tttccctggg cccagggagc cctccagcct ggaggtccct
     1741 gtgcccgagg tggaggcccc gagtggacac ttcctagatg aggatgtcag ccgggaggcc
     1801 acggagcccc tgtgggagga ggagcccttc ctccagggag aagagcccca cctgagggcc
     1861 ctggagctcc ttccgggcct gcacaagcca cttgccgtgg aagccaagct ggccaggctc
     1921 tcctccacgg gggccgggct ggacgtgccc caggcggacg tacccgaggt caccacgcag
     1981 cacccctccc ggacagatct gctggagcct ggtgacctca ggtctgaagc tgaggcggcc
     2041 gacgacctcc tgcccaggac tagaacacaa ccggccaagg gcactgggag aaaggcttta
     2101 aatctgccca catttgtgga gagggaaagc gatctgccgg cttctggacc tgatctcagg
     2161 gaggttgacc tgggcccggg agtgaccgag gaggtggtgt tggcagcaga gcccagtgtg
     2221 ggagccgagg gtgaagccca ggtggccttg gaggctccgc atcagtctct gctggccaag
     2281 acaactgcga gaagggacag tatggaggtg gcagtgctga ccgatgacct actgcccact
     2341 gtggaccagc aggaggtgct tgcccgcttg cagctgttgg agcagcaggt ggtcgggggc
     2401 gagcaggcca agaacaagga cctgaaggag aagcacaggc ggcggaagcg gtatgcagac
     2461 gagcgcaaga agcagttggt ggcggccctg cagaactcag acgaggacag cggggactgg
     2521 gtgctgctca acgtctacga ctccatccag gaggaagtga gggccaagag caagctgctg
     2581 gagaagatgc agaggaagct tcgggcggca gaggtggaga tcaaagatct gcagtcagag
     2641 tttgagctag agaagataga ttacttggcc accatccgtc ggcaggaacg tgactttatg
     2701 ctcttccagc agctcttgga gcaggtgcag cccctgattc gccgggactg taactatagc
     2761 aacctggaga agataaggcg cgagtcctgc tgggatgagg ataatggctt ctggaagatc
     2821 ccccagccca tcatcataaa aaccagcctc ccagtagcag tttcaacagg gctacagaac
     2881 agatcagccc gcaaaaactc cacagcggac aatggtgaac caggcacgca ggatgaagac
     2941 cgctacaggc tgatgctcag tcggagtgac agtgaaaaca tcgccagtaa ctacttccgg
     3001 cccaagcggg ccacccagat cctcagtgcg gatcccatga agagcctcgc atatcgcagc
     3061 tcgccgccag gcctcagctc cccacttggc aacagctctg ccatcccacc cacccaggcc
     3121 cctgaaatgc cccagcctcg gcccttccgc cttgagtccc ttgacatccc cttcaccaag
     3181 gccaggcgta agaaaagcaa aagcagcttt ggcggtgagc ctctgtgaac acattgcctg
     3241 ctgctgccct gcctttgggc tctgtgagac tgccaggccc ttccggggca ggcccagcta
     3301 ggtctcctcc cacctgcccc ccacagtact gggggcaccc gagggggccc tggccctggg
     3361 aaagcactgt cccctccctg ctacccagag agcccacgct gcccagggca tgagctcctc
     3421 ggagactgga ccatccttgg agagacctgc tccggctctc cacgccacgt cagcgttttc
     3481 atctgccctc cactgtgccc accagcattg tcctgtgcct ccatgggctc agaaacctca
     3541 gctcagcctc aaggccttca ctagcagccc gattgagtgg gacagtgact tccgcatggg
     3601 tcaagctcaa tgtcttggcg atggaaaatt gtgcctccat ctactaggcc ccgcttggtg
     3661 aggaagccct gagggacggg cacaggagtc ctggagcagc tgttcccaca ctgcctacgc
     3721 tcagctggtc tgcggcgcag aggccactcc acgttaagct gccctaataa actgccttta
     3781 gctgctgaac tgcccttctc tgatcctctg atagcatcac tggggcccct cgctgccgct
     3841 gcctggtctt catggggaag ctctttctgg agcagggatt cttaactgcc tgtaggctcc
     3901 agggtctctg caatcccctg taattgtgag tataagtgca ttttttctgg ggacagcatg
     3961 tgaatgtgaa ctgttgttag attctcgaag gatctgtgcc tcaggaaagc agagtccttg
     4021 ttctggaaaa tagaggccac atcttgctga ggcccagaga agacccaggt cttgatggcc
     4081 ctcaggggct gtcctggaac tgcgtgtcct aacatggcca gaaatgaatc caggccaccc
     4141 cagctgccta agacagaccc gtccccttgc ccattgtatc ccaggcctgc cctgtgggaa
     4201 gggcccacaa tctgagggaa aagtcttggc ctttggtgct atcctaagcc tcatttcacg
     4261 ctgagcctca tctgtgaaat ggggatacca acctcacagg gtcatcgtga aggttaaatg
     4321 agatagtgtg taaagttccc ggtgcatagc aggtgctccg tgttagtccc cctaaatcct
     4381 ccccctccat attttgtatt aattactgtg atacctgcca caagccacat gtctgggcca
     4441 aggagctcac gccctgaagc tagggtggaa ggtgattagg aaacttcgga gatcagtcta
     4501 agggaagtca gcacgcggtg cacaccttga gcgagaggat gtaagatcag gtctttatgg
     4561 ggaacaaggt gcccttgtga agggagcagc agagggtagg gctaccataa aggatggaga
     4621 agatcccggg gcttaagatg ggaatgtggg aagagggttc ctggtggagg aggctgcatg
     4681 aacaaaaggc aggaggtggg gaagctcagg gtatgttaaa ggtgggagaa ctgttccgtg
     4741 gaagccatga gcagggatgg agaagctgac gaggctgcca agatgagttt aggtggagac
     4801 ctgagtaaat ggcctttggg tgcccctgag ctgtggcaga ctgctcagca acaggccggc
     4861 accatcaggt ctgagcttgg tggattgacg gggcattgtg tgccgaaggg caggagggct
     4921 ggggtgagag gcttaacttt ccgtgcagcc ctaaccttcc atgcagggga tggaggtaga
     4981 atccgttaag gagatgcaca gagcgagact ttttgacttt tgcccccgca ttcttggctt
     5041 ggtggacaag tataagaggt cagaaaagaa cagctacctt ctctctccac agttaccttc
     5101 accatttgcc ctgggattgt gtttgggacc cagagaatag ctgaagtctt gtggtagctt
     5161 ttacttagag ccgtggtggg actgaggcag gtctgaggtg agcaggttgc ccctgtgtca
     5221 gtttagaagg ggcgggagcc agcagtactg agtggaggct cagcctggct ctgcacgaag
     5281 tgcttcaaaa cccgccctag tcctcccacg agccaaggct gttccaaagg cacaccgata
     5341 agtaggagag ctgggcctac tattgccagc ctaggacagt ggccaggaga ccagggaaat
     5401 gcccaggtaa cagggctagt gagagacggg gcttcgaaat gaactcagct agagattttg
     5461 aatggtaggc cagtccgtc
//
LOCUS       XM_032615434            4332 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 17 (KIF17),
            transcript variant X3, mRNA.
ACCESSION   XM_032615434
VERSION     XM_032615434.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4332
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4332
                     /gene="KIF17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116745064"
     CDS             46..3225
                     /gene="KIF17"
                     /codon_start=1
                     /product="kinesin-like protein KIF17 isoform X2"
                     /protein_id="XP_032471325.1"
                     /db_xref="GeneID:116745064"
                     /translation="MASESVKVVVRCRPMNQREWELNCQPVVTVDSARGQCFIQNPGA
                     VDQPPKQFTFDGAYYMDHFTEQIYNEIAYPLVEGVTEGYNGTIFAYGQTGSGKSFTMQ
                     GLPDPPCQRGIIPRAFEHIFESVQCAENTKFLVRASYLEIYNEDVRDLLGTDTKQKLE
                     LKEHSEKGVYVKGLSMHTVHSVAQCERVMETGWKNRSVGYTLMNKDSSRSHSIFTISI
                     EIYAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISA
                     LVDGRCKHIPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANRAKN
                     IRNKPRINEDPKDALLREYQEEIKKLRAILAQQMSPSTLSALLNNQVPPNPVQIEEKL
                     LPPSVMQHDTEAEKQLIREEYEERLARLRADYEAEQESRARLEEDITAMRNSYDVKLS
                     TLEENLRKETEAVLKAEVLYKAEVMSRAEFASSSEYSPTFQYKMAVKPEIYSMPDTLP
                     SEGVFKTEVSSRFEELPEVEASKSEVSLGSDESSTLEEHFISTAFPGPREPSSLEVPV
                     PEVEAPSGHFLDEDVSREATEPLWEEEPFLQGEEPHLRALELLPGLHKPLAVEAKLAR
                     LSSTGAGLDVPQADVPEVTTQHPSRTDLLEPGDLRSEAEAADDLLPRTRTQPAKGTGR
                     KALNLPTFVERESDLPASGPDLREVDLGPGVTEEVVLAAEPSVGAEGEAQVALEAPHQ
                     SLLAKTTARRDSMEVAVLTDDLLPTVDQQEVLARLQLLEQQVVGGEQAKNKDLKEKHR
                     RRKRYADERKKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEKMQRKLRAAE
                     VEIKDLQSEFELEKIDYLATIRRQERDFMLFQQLLEQVQPLIRRDCNYSNLEKIRRES
                     CWDEDNGFWKIPQPIIIKTSLPVAVSTGLQNRSARKNSTADNGEPGTDEDRYRLMLSR
                     SDSENIASNYFRPKRATQILSADPMKSLAYRSSPPGLSSPLGNSSAIPPTQAPEMPQP
                     RPFRLESLDIPFTKARRKKSKSSFGGEPL"
     misc_feature    55..1050
                     /gene="KIF17"
                     /note="Myosin and Kinesin motor domain; Region:
                     Motor_domain; cl22853"
                     /db_xref="CDD:473979"
     misc_feature    order(82..87,316..339,640..645,763..780)
                     /gene="KIF17"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:276814"
ORIGIN      
        1 ggcgtccacg tcgggccgca ccccggggac ccccgccgcg gcgctatggc ctcggagtcg
       61 gtgaaggtgg tggtgcgctg ccgccccatg aaccagcggg agtgggagct gaactgccag
      121 cctgtggtga cggtggactc cgcgcgcggc cagtgcttca tccagaaccc gggcgccgtc
      181 gaccagcccc ccaagcagtt cactttcgac ggcgcctact acatggacca ctttaccgag
      241 cagatctaca acgaaatcgc ctacccgctg gtggagggcg tcaccgaggg ctacaacggc
      301 accatctttg cctacggcca gacaggcagc gggaagtcct tcaccatgca gggcctgcct
      361 gacccaccct gccaaagagg catcatccct agggccttcg agcatatttt cgagagcgtc
      421 cagtgtgcag agaacaccaa gttcctggtc cgggcctcct acctggagat ctacaatgaa
      481 gatgtccgtg acctgctggg tactgacacc aagcagaagc tggagctgaa ggagcactcg
      541 gagaaggggg tgtacgtgaa ggggctttcc atgcacacgg tgcacagtgt ggcccagtgc
      601 gagcgcgtca tggagacggg ctggaagaac cgctcggttg gctacaccct gatgaacaag
      661 gactcttccc gctcccactc catcttcacc atcagcatcg agatctacgc ggtggatgag
      721 cggggcaagg accacctccg ggcaggcaag ctgaacctgg tggacctggc aggcagcgag
      781 cggcagtcca agacgggtgc cacgggggag cggctcaagg aggccaccaa gatcaacctg
      841 tcgctgtcgg cgctgggcaa cgtcatctcg gccctggtgg acgggcgctg caaacacatc
      901 ccctaccggg actcgaaact gacgcggctg ctgcaggact cgctgggcgg caacaccaag
      961 acactgatgg tggcctgcct gtcgcccgct gacaacaact acgatgagac cctcagcacg
     1021 ctgcgctatg ccaaccgagc caagaacatc aggaacaagc ctcgcatcaa cgaggacccc
     1081 aaggatgccc tcctgcgcga gtaccaggag gagatcaaga agctcagggc gattctggct
     1141 cagcagatga gccccagcac cctgtcagcc ctgctgaaca atcaggttcc cccaaacccc
     1201 gtccagattg aagagaagct gttgcccccg tctgtgatgc agcatgacac ggaggccgag
     1261 aagcagctga tccgggagga gtacgaagag cgcctggccc ggttgagggc cgactacgag
     1321 gcagagcagg agtccagggc ccggctggag gaggacatca ctgccatgcg caactcgtac
     1381 gatgtgaagc tgtccacact ggaggagaac ctgcgcaagg agacagaggc tgtcctgaag
     1441 gcagaagtcc tctacaaggc cgaggtcatg tccagggctg agttcgccag cagttctgag
     1501 tactcaccta ctttccagta caagatggcc gtgaaacccg agatctactc catgcctgac
     1561 accctgccca gtgagggtgt ctttaagact gaggtttctt ccaggtttga ggaactgccc
     1621 gaggtggagg cctccaagtc ggaggtttct cttgggtccg atgagtcttc cacgctcgaa
     1681 gaacatttca tctccacggc tttccctggg cccagggagc cctccagcct ggaggtccct
     1741 gtgcccgagg tggaggcccc gagtggacac ttcctagatg aggatgtcag ccgggaggcc
     1801 acggagcccc tgtgggagga ggagcccttc ctccagggag aagagcccca cctgagggcc
     1861 ctggagctcc ttccgggcct gcacaagcca cttgccgtgg aagccaagct ggccaggctc
     1921 tcctccacgg gggccgggct ggacgtgccc caggcggacg tacccgaggt caccacgcag
     1981 cacccctccc ggacagatct gctggagcct ggtgacctca ggtctgaagc tgaggcggcc
     2041 gacgacctcc tgcccaggac tagaacacaa ccggccaagg gcactgggag aaaggcttta
     2101 aatctgccca catttgtgga gagggaaagc gatctgccgg cttctggacc tgatctcagg
     2161 gaggttgacc tgggcccggg agtgaccgag gaggtggtgt tggcagcaga gcccagtgtg
     2221 ggagccgagg gtgaagccca ggtggccttg gaggctccgc atcagtctct gctggccaag
     2281 acaactgcga gaagggacag tatggaggtg gcagtgctga ccgatgacct actgcccact
     2341 gtggaccagc aggaggtgct tgcccgcttg cagctgttgg agcagcaggt ggtcgggggc
     2401 gagcaggcca agaacaagga cctgaaggag aagcacaggc ggcggaagcg gtatgcagac
     2461 gagcgcaaga agcagttggt ggcggccctg cagaactcag acgaggacag cggggactgg
     2521 gtgctgctca acgtctacga ctccatccag gaggaagtga gggccaagag caagctgctg
     2581 gagaagatgc agaggaagct tcgggcggca gaggtggaga tcaaagatct gcagtcagag
     2641 tttgagctag agaagataga ttacttggcc accatccgtc ggcaggaacg tgactttatg
     2701 ctcttccagc agctcttgga gcaggtgcag cccctgattc gccgggactg taactatagc
     2761 aacctggaga agataaggcg cgagtcctgc tgggatgagg ataatggctt ctggaagatc
     2821 ccccagccca tcatcataaa aaccagcctc ccagtagcag tttcaacagg gctacagaac
     2881 agatcagccc gcaaaaactc cacagcggac aatggtgaac caggcacgga tgaagaccgc
     2941 tacaggctga tgctcagtcg gagtgacagt gaaaacatcg ccagtaacta cttccggccc
     3001 aagcgggcca cccagatcct cagtgcggat cccatgaaga gcctcgcata tcgcagctcg
     3061 ccgccaggcc tcagctcccc acttggcaac agctctgcca tcccacccac ccaggcccct
     3121 gaaatgcccc agcctcggcc cttccgcctt gagtcccttg acatcccctt caccaaggcc
     3181 aggcgtaaga aaagcaaaag cagctttggc ggtgagcctc tgtgaacaca ttgcctgctg
     3241 ctgccctgcc tttgggctct gtgagactgc caggcccttc cggggcaggc ccagctaggt
     3301 ctcctcccac ctgcccccca cagtactggg ggcacccgag ggggccctgg ccctgggaaa
     3361 gcactgtccc ctccctgcta cccagagagc ccacgctgcc cagggcatga gctcctcgga
     3421 gactggacca tccttggaga gacctgctcc ggctctccac gccacgtcag cgttttcatc
     3481 tgccctccac tgtgcccacc agcattgtcc tgtgcctcca tgggctcaga aacctcagct
     3541 cagcctcaag gccttcacta gcagcccgat tgagtgggac agtgacttcc gcatgggtca
     3601 agctcaatgt cttggcgatg gaaaattgtg cctccatcta ctaggccccg cttggtgagg
     3661 aagccctgag ggacgggcac aggagtcctg gagcagctgt tcccacactg cctacgctca
     3721 gctggtctgc ggcgcagagg ccactccacg ttaagctgcc ctaataaact gcctttagct
     3781 gctgaactgc ccttctctga tcctctgata gcatcactgg ggcccctcgc tgccgctgcc
     3841 tggtcttcat ggggaagctc tttctggagc agggattctt aactgcctgt aggctccagg
     3901 gtctctgcaa tcccctgtaa tttggggctg gggccttgtt cctagtcgaa tctgtcctgg
     3961 gccagtgaag accgaggagg tggcccgagt tgacgccgcc actgccccag atcctgtcct
     4021 gaacgcgacg gcccagacca ggacgactag gttgaagagg cgggacgcac acttctgtcc
     4081 caagctccgg cgggaagcgg gttctgggcg ctaggcggaa gcccgggatg ggcggaaccc
     4141 cgggatgggc ggaaccaagg ggctagtaac cctgttgatt ggtcgcggca gcagagctgt
     4201 ctctctagga ttgagccttt tcctttggag aggcggagcc gcgtgcccct tccaccaata
     4261 ggattcagag tatccgcctc ctacggttca cttccggccg cgctccccgc ccctcaccat
     4321 ccgagcagcg gc
//
LOCUS       XM_032615443            4332 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 17 (KIF17),
            transcript variant X4, mRNA.
ACCESSION   XM_032615443
VERSION     XM_032615443.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4332
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4332
                     /gene="KIF17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116745064"
     CDS             46..3225
                     /gene="KIF17"
                     /codon_start=1
                     /product="kinesin-like protein KIF17 isoform X3"
                     /protein_id="XP_032471334.1"
                     /db_xref="GeneID:116745064"
                     /translation="MASESVKVVVRCRPMNQREWELNCQPVVTVDSARGQCFIQNPGA
                     VDQPPKQFTFDGAYYMDHFTEQIYNEIAYPLVEGVTEGYNGTIFAYGQTGSGKSFTMQ
                     GLPDPPCQRGIIPRAFEHIFESVQCAENTKFLVRASYLEIYNEDVRDLLGTDTKQKLE
                     LKEHSEKGVYVKGLSMHTVHSVAQCERVMETGWKNRSVGYTLMNKDSSRSHSIFTISI
                     EIYAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISA
                     LVDGRCKHIPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANRAKN
                     IRNKPRINEDPKDALLREYQEEIKKLRAILAQQMSPSTLSALLNNQVPPNPVQIEEKL
                     LPPSVMQHDTEAEKQLIREEYEERLARLRADYEAEQESRARLEEDITAMRNSYDVKLS
                     TLEENLRKETEAVLKAEVLYKAEVMSRAEFASSSEYSPTFQYKMAVKPEIYSMPDTLP
                     SEGVFKTEVSSRFEELPEVEASKSEVSLGSDESSTLEEHFISTAFPGPREPSSLEVPV
                     PEVEAPSGHFLDEDVSREATEPLWEEEPFLQGEEPHLRALELLPGLHKPLAVEAKLAR
                     LSSTGAGLDVPQADVPEVTTQHPSRTDLLEPGDLRSEAEAADDLLPRTRTQPAKGTGR
                     KALNLPTFVERESDLPASGPDLREVDLGPGVTEEVVLAAEPSVGAEGEAQVALEAPHQ
                     SLLAKTTARRDSMEVAVLTDDLLPTVDQQEVLARLQLLEQQVVGGEQAKNKDLKEKHR
                     RRKRYADERKKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEKMQRKLRAAE
                     VEIKDLQSEFELEKIDYLATIRRQERDFMLFQQLLEQVQPLIRRDCNYSNLEKIRRES
                     CWDEDNGFWKIPQPIIIKTSLPVVSTGLQNRSARKNSTADNGEPGTQDEDRYRLMLSR
                     SDSENIASNYFRPKRATQILSADPMKSLAYRSSPPGLSSPLGNSSAIPPTQAPEMPQP
                     RPFRLESLDIPFTKARRKKSKSSFGGEPL"
     misc_feature    55..1050
                     /gene="KIF17"
                     /note="Myosin and Kinesin motor domain; Region:
                     Motor_domain; cl22853"
                     /db_xref="CDD:473979"
     misc_feature    order(82..87,316..339,640..645,763..780)
                     /gene="KIF17"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:276814"
ORIGIN      
        1 ggcgtccacg tcgggccgca ccccggggac ccccgccgcg gcgctatggc ctcggagtcg
       61 gtgaaggtgg tggtgcgctg ccgccccatg aaccagcggg agtgggagct gaactgccag
      121 cctgtggtga cggtggactc cgcgcgcggc cagtgcttca tccagaaccc gggcgccgtc
      181 gaccagcccc ccaagcagtt cactttcgac ggcgcctact acatggacca ctttaccgag
      241 cagatctaca acgaaatcgc ctacccgctg gtggagggcg tcaccgaggg ctacaacggc
      301 accatctttg cctacggcca gacaggcagc gggaagtcct tcaccatgca gggcctgcct
      361 gacccaccct gccaaagagg catcatccct agggccttcg agcatatttt cgagagcgtc
      421 cagtgtgcag agaacaccaa gttcctggtc cgggcctcct acctggagat ctacaatgaa
      481 gatgtccgtg acctgctggg tactgacacc aagcagaagc tggagctgaa ggagcactcg
      541 gagaaggggg tgtacgtgaa ggggctttcc atgcacacgg tgcacagtgt ggcccagtgc
      601 gagcgcgtca tggagacggg ctggaagaac cgctcggttg gctacaccct gatgaacaag
      661 gactcttccc gctcccactc catcttcacc atcagcatcg agatctacgc ggtggatgag
      721 cggggcaagg accacctccg ggcaggcaag ctgaacctgg tggacctggc aggcagcgag
      781 cggcagtcca agacgggtgc cacgggggag cggctcaagg aggccaccaa gatcaacctg
      841 tcgctgtcgg cgctgggcaa cgtcatctcg gccctggtgg acgggcgctg caaacacatc
      901 ccctaccggg actcgaaact gacgcggctg ctgcaggact cgctgggcgg caacaccaag
      961 acactgatgg tggcctgcct gtcgcccgct gacaacaact acgatgagac cctcagcacg
     1021 ctgcgctatg ccaaccgagc caagaacatc aggaacaagc ctcgcatcaa cgaggacccc
     1081 aaggatgccc tcctgcgcga gtaccaggag gagatcaaga agctcagggc gattctggct
     1141 cagcagatga gccccagcac cctgtcagcc ctgctgaaca atcaggttcc cccaaacccc
     1201 gtccagattg aagagaagct gttgcccccg tctgtgatgc agcatgacac ggaggccgag
     1261 aagcagctga tccgggagga gtacgaagag cgcctggccc ggttgagggc cgactacgag
     1321 gcagagcagg agtccagggc ccggctggag gaggacatca ctgccatgcg caactcgtac
     1381 gatgtgaagc tgtccacact ggaggagaac ctgcgcaagg agacagaggc tgtcctgaag
     1441 gcagaagtcc tctacaaggc cgaggtcatg tccagggctg agttcgccag cagttctgag
     1501 tactcaccta ctttccagta caagatggcc gtgaaacccg agatctactc catgcctgac
     1561 accctgccca gtgagggtgt ctttaagact gaggtttctt ccaggtttga ggaactgccc
     1621 gaggtggagg cctccaagtc ggaggtttct cttgggtccg atgagtcttc cacgctcgaa
     1681 gaacatttca tctccacggc tttccctggg cccagggagc cctccagcct ggaggtccct
     1741 gtgcccgagg tggaggcccc gagtggacac ttcctagatg aggatgtcag ccgggaggcc
     1801 acggagcccc tgtgggagga ggagcccttc ctccagggag aagagcccca cctgagggcc
     1861 ctggagctcc ttccgggcct gcacaagcca cttgccgtgg aagccaagct ggccaggctc
     1921 tcctccacgg gggccgggct ggacgtgccc caggcggacg tacccgaggt caccacgcag
     1981 cacccctccc ggacagatct gctggagcct ggtgacctca ggtctgaagc tgaggcggcc
     2041 gacgacctcc tgcccaggac tagaacacaa ccggccaagg gcactgggag aaaggcttta
     2101 aatctgccca catttgtgga gagggaaagc gatctgccgg cttctggacc tgatctcagg
     2161 gaggttgacc tgggcccggg agtgaccgag gaggtggtgt tggcagcaga gcccagtgtg
     2221 ggagccgagg gtgaagccca ggtggccttg gaggctccgc atcagtctct gctggccaag
     2281 acaactgcga gaagggacag tatggaggtg gcagtgctga ccgatgacct actgcccact
     2341 gtggaccagc aggaggtgct tgcccgcttg cagctgttgg agcagcaggt ggtcgggggc
     2401 gagcaggcca agaacaagga cctgaaggag aagcacaggc ggcggaagcg gtatgcagac
     2461 gagcgcaaga agcagttggt ggcggccctg cagaactcag acgaggacag cggggactgg
     2521 gtgctgctca acgtctacga ctccatccag gaggaagtga gggccaagag caagctgctg
     2581 gagaagatgc agaggaagct tcgggcggca gaggtggaga tcaaagatct gcagtcagag
     2641 tttgagctag agaagataga ttacttggcc accatccgtc ggcaggaacg tgactttatg
     2701 ctcttccagc agctcttgga gcaggtgcag cccctgattc gccgggactg taactatagc
     2761 aacctggaga agataaggcg cgagtcctgc tgggatgagg ataatggctt ctggaagatc
     2821 ccccagccca tcatcataaa aaccagcctc ccagtagttt caacagggct acagaacaga
     2881 tcagcccgca aaaactccac agcggacaat ggtgaaccag gcacgcagga tgaagaccgc
     2941 tacaggctga tgctcagtcg gagtgacagt gaaaacatcg ccagtaacta cttccggccc
     3001 aagcgggcca cccagatcct cagtgcggat cccatgaaga gcctcgcata tcgcagctcg
     3061 ccgccaggcc tcagctcccc acttggcaac agctctgcca tcccacccac ccaggcccct
     3121 gaaatgcccc agcctcggcc cttccgcctt gagtcccttg acatcccctt caccaaggcc
     3181 aggcgtaaga aaagcaaaag cagctttggc ggtgagcctc tgtgaacaca ttgcctgctg
     3241 ctgccctgcc tttgggctct gtgagactgc caggcccttc cggggcaggc ccagctaggt
     3301 ctcctcccac ctgcccccca cagtactggg ggcacccgag ggggccctgg ccctgggaaa
     3361 gcactgtccc ctccctgcta cccagagagc ccacgctgcc cagggcatga gctcctcgga
     3421 gactggacca tccttggaga gacctgctcc ggctctccac gccacgtcag cgttttcatc
     3481 tgccctccac tgtgcccacc agcattgtcc tgtgcctcca tgggctcaga aacctcagct
     3541 cagcctcaag gccttcacta gcagcccgat tgagtgggac agtgacttcc gcatgggtca
     3601 agctcaatgt cttggcgatg gaaaattgtg cctccatcta ctaggccccg cttggtgagg
     3661 aagccctgag ggacgggcac aggagtcctg gagcagctgt tcccacactg cctacgctca
     3721 gctggtctgc ggcgcagagg ccactccacg ttaagctgcc ctaataaact gcctttagct
     3781 gctgaactgc ccttctctga tcctctgata gcatcactgg ggcccctcgc tgccgctgcc
     3841 tggtcttcat ggggaagctc tttctggagc agggattctt aactgcctgt aggctccagg
     3901 gtctctgcaa tcccctgtaa tttggggctg gggccttgtt cctagtcgaa tctgtcctgg
     3961 gccagtgaag accgaggagg tggcccgagt tgacgccgcc actgccccag atcctgtcct
     4021 gaacgcgacg gcccagacca ggacgactag gttgaagagg cgggacgcac acttctgtcc
     4081 caagctccgg cgggaagcgg gttctgggcg ctaggcggaa gcccgggatg ggcggaaccc
     4141 cgggatgggc ggaaccaagg ggctagtaac cctgttgatt ggtcgcggca gcagagctgt
     4201 ctctctagga ttgagccttt tcctttggag aggcggagcc gcgtgcccct tccaccaata
     4261 ggattcagag tatccgcctc ctacggttca cttccggccg cgctccccgc ccctcaccat
     4321 ccgagcagcg gc
//
LOCUS       XM_032615452            4329 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 17 (KIF17),
            transcript variant X5, mRNA.
ACCESSION   XM_032615452
VERSION     XM_032615452.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4329
                     /gene="KIF17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116745064"
     CDS             46..3222
                     /gene="KIF17"
                     /codon_start=1
                     /product="kinesin-like protein KIF17 isoform X4"
                     /protein_id="XP_032471343.1"
                     /db_xref="GeneID:116745064"
                     /translation="MASESVKVVVRCRPMNQREWELNCQPVVTVDSARGQCFIQNPGA
                     VDQPPKQFTFDGAYYMDHFTEQIYNEIAYPLVEGVTEGYNGTIFAYGQTGSGKSFTMQ
                     GLPDPPCQRGIIPRAFEHIFESVQCAENTKFLVRASYLEIYNEDVRDLLGTDTKQKLE
                     LKEHSEKGVYVKGLSMHTVHSVAQCERVMETGWKNRSVGYTLMNKDSSRSHSIFTISI
                     EIYAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISA
                     LVDGRCKHIPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANRAKN
                     IRNKPRINEDPKDALLREYQEEIKKLRAILAQQMSPSTLSALLNNQVPPNPVQIEEKL
                     LPPSVMQHDTEAEKQLIREEYEERLARLRADYEAEQESRARLEEDITAMRNSYDVKLS
                     TLEENLRKETEAVLKAEVLYKAEVMSRAEFASSSEYSPTFQYKMAVKPEIYSMPDTLP
                     SEGVFKTEVSSRFEELPEVEASKSEVSLGSDESSTLEEHFISTAFPGPREPSSLEVPV
                     PEVEAPSGHFLDEDVSREATEPLWEEEPFLQGEEPHLRALELLPGLHKPLAVEAKLAR
                     LSSTGAGLDVPQADVPEVTTQHPSRTDLLEPGDLRSEAEAADDLLPRTRTQPAKGTGR
                     KALNLPTFVERESDLPASGPDLREVDLGPGVTEEVVLAAEPSVGAEGEAQVALEAPHQ
                     SLLAKTTARRDSMEVAVLTDDLLPTVDQQEVLARLQLLEQQVVGGEQAKNKDLKEKHR
                     RRKRYADERKKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEKMQRKLRAAE
                     VEIKDLQSEFELEKIDYLATIRRQERDFMLFQQLLEQVQPLIRRDCNYSNLEKIRRES
                     CWDEDNGFWKIPQPIIIKTSLPVVSTGLQNRSARKNSTADNGEPGTDEDRYRLMLSRS
                     DSENIASNYFRPKRATQILSADPMKSLAYRSSPPGLSSPLGNSSAIPPTQAPEMPQPR
                     PFRLESLDIPFTKARRKKSKSSFGGEPL"
     misc_feature    55..1050
                     /gene="KIF17"
                     /note="Myosin and Kinesin motor domain; Region:
                     Motor_domain; cl22853"
                     /db_xref="CDD:473979"
     misc_feature    order(82..87,316..339,640..645,763..780)
                     /gene="KIF17"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:276814"
ORIGIN      
        1 ggcgtccacg tcgggccgca ccccggggac ccccgccgcg gcgctatggc ctcggagtcg
       61 gtgaaggtgg tggtgcgctg ccgccccatg aaccagcggg agtgggagct gaactgccag
      121 cctgtggtga cggtggactc cgcgcgcggc cagtgcttca tccagaaccc gggcgccgtc
      181 gaccagcccc ccaagcagtt cactttcgac ggcgcctact acatggacca ctttaccgag
      241 cagatctaca acgaaatcgc ctacccgctg gtggagggcg tcaccgaggg ctacaacggc
      301 accatctttg cctacggcca gacaggcagc gggaagtcct tcaccatgca gggcctgcct
      361 gacccaccct gccaaagagg catcatccct agggccttcg agcatatttt cgagagcgtc
      421 cagtgtgcag agaacaccaa gttcctggtc cgggcctcct acctggagat ctacaatgaa
      481 gatgtccgtg acctgctggg tactgacacc aagcagaagc tggagctgaa ggagcactcg
      541 gagaaggggg tgtacgtgaa ggggctttcc atgcacacgg tgcacagtgt ggcccagtgc
      601 gagcgcgtca tggagacggg ctggaagaac cgctcggttg gctacaccct gatgaacaag
      661 gactcttccc gctcccactc catcttcacc atcagcatcg agatctacgc ggtggatgag
      721 cggggcaagg accacctccg ggcaggcaag ctgaacctgg tggacctggc aggcagcgag
      781 cggcagtcca agacgggtgc cacgggggag cggctcaagg aggccaccaa gatcaacctg
      841 tcgctgtcgg cgctgggcaa cgtcatctcg gccctggtgg acgggcgctg caaacacatc
      901 ccctaccggg actcgaaact gacgcggctg ctgcaggact cgctgggcgg caacaccaag
      961 acactgatgg tggcctgcct gtcgcccgct gacaacaact acgatgagac cctcagcacg
     1021 ctgcgctatg ccaaccgagc caagaacatc aggaacaagc ctcgcatcaa cgaggacccc
     1081 aaggatgccc tcctgcgcga gtaccaggag gagatcaaga agctcagggc gattctggct
     1141 cagcagatga gccccagcac cctgtcagcc ctgctgaaca atcaggttcc cccaaacccc
     1201 gtccagattg aagagaagct gttgcccccg tctgtgatgc agcatgacac ggaggccgag
     1261 aagcagctga tccgggagga gtacgaagag cgcctggccc ggttgagggc cgactacgag
     1321 gcagagcagg agtccagggc ccggctggag gaggacatca ctgccatgcg caactcgtac
     1381 gatgtgaagc tgtccacact ggaggagaac ctgcgcaagg agacagaggc tgtcctgaag
     1441 gcagaagtcc tctacaaggc cgaggtcatg tccagggctg agttcgccag cagttctgag
     1501 tactcaccta ctttccagta caagatggcc gtgaaacccg agatctactc catgcctgac
     1561 accctgccca gtgagggtgt ctttaagact gaggtttctt ccaggtttga ggaactgccc
     1621 gaggtggagg cctccaagtc ggaggtttct cttgggtccg atgagtcttc cacgctcgaa
     1681 gaacatttca tctccacggc tttccctggg cccagggagc cctccagcct ggaggtccct
     1741 gtgcccgagg tggaggcccc gagtggacac ttcctagatg aggatgtcag ccgggaggcc
     1801 acggagcccc tgtgggagga ggagcccttc ctccagggag aagagcccca cctgagggcc
     1861 ctggagctcc ttccgggcct gcacaagcca cttgccgtgg aagccaagct ggccaggctc
     1921 tcctccacgg gggccgggct ggacgtgccc caggcggacg tacccgaggt caccacgcag
     1981 cacccctccc ggacagatct gctggagcct ggtgacctca ggtctgaagc tgaggcggcc
     2041 gacgacctcc tgcccaggac tagaacacaa ccggccaagg gcactgggag aaaggcttta
     2101 aatctgccca catttgtgga gagggaaagc gatctgccgg cttctggacc tgatctcagg
     2161 gaggttgacc tgggcccggg agtgaccgag gaggtggtgt tggcagcaga gcccagtgtg
     2221 ggagccgagg gtgaagccca ggtggccttg gaggctccgc atcagtctct gctggccaag
     2281 acaactgcga gaagggacag tatggaggtg gcagtgctga ccgatgacct actgcccact
     2341 gtggaccagc aggaggtgct tgcccgcttg cagctgttgg agcagcaggt ggtcgggggc
     2401 gagcaggcca agaacaagga cctgaaggag aagcacaggc ggcggaagcg gtatgcagac
     2461 gagcgcaaga agcagttggt ggcggccctg cagaactcag acgaggacag cggggactgg
     2521 gtgctgctca acgtctacga ctccatccag gaggaagtga gggccaagag caagctgctg
     2581 gagaagatgc agaggaagct tcgggcggca gaggtggaga tcaaagatct gcagtcagag
     2641 tttgagctag agaagataga ttacttggcc accatccgtc ggcaggaacg tgactttatg
     2701 ctcttccagc agctcttgga gcaggtgcag cccctgattc gccgggactg taactatagc
     2761 aacctggaga agataaggcg cgagtcctgc tgggatgagg ataatggctt ctggaagatc
     2821 ccccagccca tcatcataaa aaccagcctc ccagtagttt caacagggct acagaacaga
     2881 tcagcccgca aaaactccac agcggacaat ggtgaaccag gcacggatga agaccgctac
     2941 aggctgatgc tcagtcggag tgacagtgaa aacatcgcca gtaactactt ccggcccaag
     3001 cgggccaccc agatcctcag tgcggatccc atgaagagcc tcgcatatcg cagctcgccg
     3061 ccaggcctca gctccccact tggcaacagc tctgccatcc cacccaccca ggcccctgaa
     3121 atgccccagc ctcggccctt ccgccttgag tcccttgaca tccccttcac caaggccagg
     3181 cgtaagaaaa gcaaaagcag ctttggcggt gagcctctgt gaacacattg cctgctgctg
     3241 ccctgccttt gggctctgtg agactgccag gcccttccgg ggcaggccca gctaggtctc
     3301 ctcccacctg ccccccacag tactgggggc acccgagggg gccctggccc tgggaaagca
     3361 ctgtcccctc cctgctaccc agagagccca cgctgcccag ggcatgagct cctcggagac
     3421 tggaccatcc ttggagagac ctgctccggc tctccacgcc acgtcagcgt tttcatctgc
     3481 cctccactgt gcccaccagc attgtcctgt gcctccatgg gctcagaaac ctcagctcag
     3541 cctcaaggcc ttcactagca gcccgattga gtgggacagt gacttccgca tgggtcaagc
     3601 tcaatgtctt ggcgatggaa aattgtgcct ccatctacta ggccccgctt ggtgaggaag
     3661 ccctgaggga cgggcacagg agtcctggag cagctgttcc cacactgcct acgctcagct
     3721 ggtctgcggc gcagaggcca ctccacgtta agctgcccta ataaactgcc tttagctgct
     3781 gaactgccct tctctgatcc tctgatagca tcactggggc ccctcgctgc cgctgcctgg
     3841 tcttcatggg gaagctcttt ctggagcagg gattcttaac tgcctgtagg ctccagggtc
     3901 tctgcaatcc cctgtaattt ggggctgggg ccttgttcct agtcgaatct gtcctgggcc
     3961 agtgaagacc gaggaggtgg cccgagttga cgccgccact gccccagatc ctgtcctgaa
     4021 cgcgacggcc cagaccagga cgactaggtt gaagaggcgg gacgcacact tctgtcccaa
     4081 gctccggcgg gaagcgggtt ctgggcgcta ggcggaagcc cgggatgggc ggaaccccgg
     4141 gatgggcgga accaaggggc tagtaaccct gttgattggt cgcggcagca gagctgtctc
     4201 tctaggattg agccttttcc tttggagagg cggagccgcg tgccccttcc accaatagga
     4261 ttcagagtat ccgcctccta cggttcactt ccggccgcgc tccccgcccc tcaccatccg
     4321 agcagcggc
//
LOCUS       XM_032615461            3995 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 17 (KIF17),
            transcript variant X6, mRNA.
ACCESSION   XM_032615461
VERSION     XM_032615461.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3995
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3995
                     /gene="KIF17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116745064"
     CDS             46..3150
                     /gene="KIF17"
                     /codon_start=1
                     /product="kinesin-like protein KIF17 isoform X5"
                     /protein_id="XP_032471352.1"
                     /db_xref="GeneID:116745064"
                     /translation="MASESVKVVVRCRPMNQREWELNCQPVVTVDSARGQCFIQNPGA
                     VDQPPKQFTFDGAYYMDHFTEQIYNEIAYPLVEGVTEGYNGTIFAYGQTGSGKSFTMQ
                     GLPDPPCQRGIIPRAFEHIFESVQCAENTKFLVRASYLEIYNEDVRDLLGTDTKQKLE
                     LKEHSEKGVYVKGLSMHTVHSVAQCERVMETGWKNRSVGYTLMNKDSSRSHSIFTISI
                     EIYAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISA
                     LVDGRCKHIPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANRAKN
                     IRNKPRINEDPKDALLREYQEEIKKLRAILAQQMSPSTLSALLNNQVPPNPVQIEEKL
                     LPPSVMQHDTEAEKQLIREEYEERLARLRADYEAEQESRARLEEDITAMRNSYDVKLS
                     TLEENLRKETEAVLKAEVLYKAEVMSRAEFASSSEYSPTFQYKMAVKPEIYSMPDTLP
                     SEGVFKTEVSSRFEELPEVEASKSEVSLGSDESSTLEEHFISTAFPGPREPSSLEVPV
                     PEVEAPSGHFLDEDVSREATEPLWEEEPFLQGEEPHLRALELLPGLHKPLAVEAKLAR
                     LSSTGAGLDVPQADVPEVTTQHPSRTDLLEPGDLRSEAEAADDLLPRTRTQPAKGTGR
                     KALNLPTFVERESDLPASGPDLREVDLGPGVTEEVVLAAEPSVGAEGEAQVALEAPHQ
                     SLLAKTTARRDSMEVAVLTDDLLPTVDQQEVLARLQLLEQQVVGGEQAKNKDLKEKHR
                     RRKRYADERKKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEKMQRKLRAAE
                     VEIKDLQSEFELEKIDYLATIRRQERDFMLFQQLLEQVQPLIRRDCNYSNLEKIRRES
                     CWDEDNGFWKIPQPIIIKTSLPVAVSTGLQNRSARKNSTADNGEPGTQDEDRYRLMLS
                     RSDSENIASNYFRPKRATQILSADPMKSLGEYRAHLLSSRPSLRALEDLESHRPGSEA
                     PFPL"
     misc_feature    55..1050
                     /gene="KIF17"
                     /note="Myosin and Kinesin motor domain; Region:
                     Motor_domain; cl22853"
                     /db_xref="CDD:473979"
     misc_feature    order(82..87,316..339,640..645,763..780)
                     /gene="KIF17"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:276814"
ORIGIN      
        1 ggcgtccacg tcgggccgca ccccggggac ccccgccgcg gcgctatggc ctcggagtcg
       61 gtgaaggtgg tggtgcgctg ccgccccatg aaccagcggg agtgggagct gaactgccag
      121 cctgtggtga cggtggactc cgcgcgcggc cagtgcttca tccagaaccc gggcgccgtc
      181 gaccagcccc ccaagcagtt cactttcgac ggcgcctact acatggacca ctttaccgag
      241 cagatctaca acgaaatcgc ctacccgctg gtggagggcg tcaccgaggg ctacaacggc
      301 accatctttg cctacggcca gacaggcagc gggaagtcct tcaccatgca gggcctgcct
      361 gacccaccct gccaaagagg catcatccct agggccttcg agcatatttt cgagagcgtc
      421 cagtgtgcag agaacaccaa gttcctggtc cgggcctcct acctggagat ctacaatgaa
      481 gatgtccgtg acctgctggg tactgacacc aagcagaagc tggagctgaa ggagcactcg
      541 gagaaggggg tgtacgtgaa ggggctttcc atgcacacgg tgcacagtgt ggcccagtgc
      601 gagcgcgtca tggagacggg ctggaagaac cgctcggttg gctacaccct gatgaacaag
      661 gactcttccc gctcccactc catcttcacc atcagcatcg agatctacgc ggtggatgag
      721 cggggcaagg accacctccg ggcaggcaag ctgaacctgg tggacctggc aggcagcgag
      781 cggcagtcca agacgggtgc cacgggggag cggctcaagg aggccaccaa gatcaacctg
      841 tcgctgtcgg cgctgggcaa cgtcatctcg gccctggtgg acgggcgctg caaacacatc
      901 ccctaccggg actcgaaact gacgcggctg ctgcaggact cgctgggcgg caacaccaag
      961 acactgatgg tggcctgcct gtcgcccgct gacaacaact acgatgagac cctcagcacg
     1021 ctgcgctatg ccaaccgagc caagaacatc aggaacaagc ctcgcatcaa cgaggacccc
     1081 aaggatgccc tcctgcgcga gtaccaggag gagatcaaga agctcagggc gattctggct
     1141 cagcagatga gccccagcac cctgtcagcc ctgctgaaca atcaggttcc cccaaacccc
     1201 gtccagattg aagagaagct gttgcccccg tctgtgatgc agcatgacac ggaggccgag
     1261 aagcagctga tccgggagga gtacgaagag cgcctggccc ggttgagggc cgactacgag
     1321 gcagagcagg agtccagggc ccggctggag gaggacatca ctgccatgcg caactcgtac
     1381 gatgtgaagc tgtccacact ggaggagaac ctgcgcaagg agacagaggc tgtcctgaag
     1441 gcagaagtcc tctacaaggc cgaggtcatg tccagggctg agttcgccag cagttctgag
     1501 tactcaccta ctttccagta caagatggcc gtgaaacccg agatctactc catgcctgac
     1561 accctgccca gtgagggtgt ctttaagact gaggtttctt ccaggtttga ggaactgccc
     1621 gaggtggagg cctccaagtc ggaggtttct cttgggtccg atgagtcttc cacgctcgaa
     1681 gaacatttca tctccacggc tttccctggg cccagggagc cctccagcct ggaggtccct
     1741 gtgcccgagg tggaggcccc gagtggacac ttcctagatg aggatgtcag ccgggaggcc
     1801 acggagcccc tgtgggagga ggagcccttc ctccagggag aagagcccca cctgagggcc
     1861 ctggagctcc ttccgggcct gcacaagcca cttgccgtgg aagccaagct ggccaggctc
     1921 tcctccacgg gggccgggct ggacgtgccc caggcggacg tacccgaggt caccacgcag
     1981 cacccctccc ggacagatct gctggagcct ggtgacctca ggtctgaagc tgaggcggcc
     2041 gacgacctcc tgcccaggac tagaacacaa ccggccaagg gcactgggag aaaggcttta
     2101 aatctgccca catttgtgga gagggaaagc gatctgccgg cttctggacc tgatctcagg
     2161 gaggttgacc tgggcccggg agtgaccgag gaggtggtgt tggcagcaga gcccagtgtg
     2221 ggagccgagg gtgaagccca ggtggccttg gaggctccgc atcagtctct gctggccaag
     2281 acaactgcga gaagggacag tatggaggtg gcagtgctga ccgatgacct actgcccact
     2341 gtggaccagc aggaggtgct tgcccgcttg cagctgttgg agcagcaggt ggtcgggggc
     2401 gagcaggcca agaacaagga cctgaaggag aagcacaggc ggcggaagcg gtatgcagac
     2461 gagcgcaaga agcagttggt ggcggccctg cagaactcag acgaggacag cggggactgg
     2521 gtgctgctca acgtctacga ctccatccag gaggaagtga gggccaagag caagctgctg
     2581 gagaagatgc agaggaagct tcgggcggca gaggtggaga tcaaagatct gcagtcagag
     2641 tttgagctag agaagataga ttacttggcc accatccgtc ggcaggaacg tgactttatg
     2701 ctcttccagc agctcttgga gcaggtgcag cccctgattc gccgggactg taactatagc
     2761 aacctggaga agataaggcg cgagtcctgc tgggatgagg ataatggctt ctggaagatc
     2821 ccccagccca tcatcataaa aaccagcctc ccagtagcag tttcaacagg gctacagaac
     2881 agatcagccc gcaaaaactc cacagcggac aatggtgaac caggcacgca ggatgaagac
     2941 cgctacaggc tgatgctcag tcggagtgac agtgaaaaca tcgccagtaa ctacttccgg
     3001 cccaagcggg ccacccagat cctcagtgcg gatcccatga agagcctcgg tgagtaccgt
     3061 gcccacctcc tgtcctccag gccctccctg agagctctgg aggatttgga gtcacacagg
     3121 cctgggtcag aagccccttt ccctctctga gcctcagttt cctcagctgt aaactgaggg
     3181 ggatatgcct tctcctcagg gtcaggtgag atgaggtggg aagtgctcag tacacggcct
     3241 cccctttcct cccccactct gtccatctcc cggtggggag gtgctgagtt ggatcctgtg
     3301 tctccccgac acgcagaagg tcctcagcac acagcttggg ccccggcctg gagttgtctg
     3361 ggacttggtc agttgccacc agcttcctca gttgccagta cggtgacttt ctcccactga
     3421 gccaagtggg ggcaaacagg accacaaaag caaaacacac ttttacgagc aagaatcgaa
     3481 aaccactttg ttcctctgct tttaaaacta aaatcgaaga ccacagagct tctaataaaa
     3541 taccaataaa aagcaaatct cagttctaca cagaggttat ttgagagaca gaatgggtgg
     3601 agttgaggaa taaggaggga aaagctggac aggaaagaaa ctgacatcag ttgagtagtt
     3661 ggcatcatgc ccatgttgca ggtgaggaaa ctgaggctcg gcgagaagtg gctccctagg
     3721 gttatacttc caggaagtgg tggagcaggg atgtgaacca ggcttgtgtg gcttgacagt
     3781 ccaggctgcc tcagcctgag gctttaaaac tccatgctcc cagcccagac cctttggatg
     3841 cagatgtagt gctgggtccg aggcctcaac cacagcagct tctcagagcc tggggtccca
     3901 gctgcgggac cagggcctct ggctgggtag ggggtggacc agactttgca ccccgcactc
     3961 cccgcatgga gtcttttctc tccatcctct gcgct
//
LOCUS       XM_032615472            4188 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinesin family member 17 (KIF17),
            transcript variant X7, mRNA.
ACCESSION   XM_032615472
VERSION     XM_032615472.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4188
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4188
                     /gene="KIF17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116745064"
     CDS             46..3081
                     /gene="KIF17"
                     /codon_start=1
                     /product="kinesin-like protein KIF17 isoform X6"
                     /protein_id="XP_032471363.1"
                     /db_xref="GeneID:116745064"
                     /translation="MASESVKVVVRCRPMNQREWELNCQPVVTVDSARGQCFIQNPGA
                     VDQPPKQFTFDGAYYMDHFTEQIYNEIAYPLVECAENTKFLVRASYLEIYNEDVRDLL
                     GTDTKQKLELKEHSEKGVYVKGLSMHTVHSVAQCERVMETGWKNRSVGYTLMNKDSSR
                     SHSIFTISIEIYAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSL
                     SALGNVISALVDGRCKHIPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLST
                     LRYANRAKNIRNKPRINEDPKDALLREYQEEIKKLRAILAQQMSPSTLSALLNNQVPP
                     NPVQIEEKLLPPSVMQHDTEAEKQLIREEYEERLARLRADYEAEQESRARLEEDITAM
                     RNSYDVKLSTLEENLRKETEAVLKAEVLYKAEVMSRAEFASSSEYSPTFQYKMAVKPE
                     IYSMPDTLPSEGVFKTEVSSRFEELPEVEASKSEVSLGSDESSTLEEHFISTAFPGPR
                     EPSSLEVPVPEVEAPSGHFLDEDVSREATEPLWEEEPFLQGEEPHLRALELLPGLHKP
                     LAVEAKLARLSSTGAGLDVPQADVPEVTTQHPSRTDLLEPGDLRSEAEAADDLLPRTR
                     TQPAKGTGRKALNLPTFVERESDLPASGPDLREVDLGPGVTEEVVLAAEPSVGAEGEA
                     QVALEAPHQSLLAKTTARRDSMEVAVLTDDLLPTVDQQEVLARLQLLEQQVVGGEQAK
                     NKDLKEKHRRRKRYADERKKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEK
                     MQRKLRAAEVEIKDLQSEFELEKIDYLATIRRQERDFMLFQQLLEQVQPLIRRDCNYS
                     NLEKIRRESCWDEDNGFWKIPQPIIIKTSLPVAVSTGLQNRSARKNSTADNGEPGTQD
                     EDRYRLMLSRSDSENIASNYFRPKRATQILSADPMKSLAYRSSPPGLSSPLGNSSAIP
                     PTQAPEMPQPRPFRLESLDIPFTKARRKKSKSSFGGEPL"
     misc_feature    55..903
                     /gene="KIF17"
                     /note="Myosin and Kinesin motor domain; Region:
                     Motor_domain; cl22853"
                     /db_xref="CDD:473979"
ORIGIN      
        1 ggcgtccacg tcgggccgca ccccggggac ccccgccgcg gcgctatggc ctcggagtcg
       61 gtgaaggtgg tggtgcgctg ccgccccatg aaccagcggg agtgggagct gaactgccag
      121 cctgtggtga cggtggactc cgcgcgcggc cagtgcttca tccagaaccc gggcgccgtc
      181 gaccagcccc ccaagcagtt cactttcgac ggcgcctact acatggacca ctttaccgag
      241 cagatctaca acgaaatcgc ctacccgctg gtggagtgtg cagagaacac caagttcctg
      301 gtccgggcct cctacctgga gatctacaat gaagatgtcc gtgacctgct gggtactgac
      361 accaagcaga agctggagct gaaggagcac tcggagaagg gggtgtacgt gaaggggctt
      421 tccatgcaca cggtgcacag tgtggcccag tgcgagcgcg tcatggagac gggctggaag
      481 aaccgctcgg ttggctacac cctgatgaac aaggactctt cccgctccca ctccatcttc
      541 accatcagca tcgagatcta cgcggtggat gagcggggca aggaccacct ccgggcaggc
      601 aagctgaacc tggtggacct ggcaggcagc gagcggcagt ccaagacggg tgccacgggg
      661 gagcggctca aggaggccac caagatcaac ctgtcgctgt cggcgctggg caacgtcatc
      721 tcggccctgg tggacgggcg ctgcaaacac atcccctacc gggactcgaa actgacgcgg
      781 ctgctgcagg actcgctggg cggcaacacc aagacactga tggtggcctg cctgtcgccc
      841 gctgacaaca actacgatga gaccctcagc acgctgcgct atgccaaccg agccaagaac
      901 atcaggaaca agcctcgcat caacgaggac cccaaggatg ccctcctgcg cgagtaccag
      961 gaggagatca agaagctcag ggcgattctg gctcagcaga tgagccccag caccctgtca
     1021 gccctgctga acaatcaggt tcccccaaac cccgtccaga ttgaagagaa gctgttgccc
     1081 ccgtctgtga tgcagcatga cacggaggcc gagaagcagc tgatccggga ggagtacgaa
     1141 gagcgcctgg cccggttgag ggccgactac gaggcagagc aggagtccag ggcccggctg
     1201 gaggaggaca tcactgccat gcgcaactcg tacgatgtga agctgtccac actggaggag
     1261 aacctgcgca aggagacaga ggctgtcctg aaggcagaag tcctctacaa ggccgaggtc
     1321 atgtccaggg ctgagttcgc cagcagttct gagtactcac ctactttcca gtacaagatg
     1381 gccgtgaaac ccgagatcta ctccatgcct gacaccctgc ccagtgaggg tgtctttaag
     1441 actgaggttt cttccaggtt tgaggaactg cccgaggtgg aggcctccaa gtcggaggtt
     1501 tctcttgggt ccgatgagtc ttccacgctc gaagaacatt tcatctccac ggctttccct
     1561 gggcccaggg agccctccag cctggaggtc cctgtgcccg aggtggaggc cccgagtgga
     1621 cacttcctag atgaggatgt cagccgggag gccacggagc ccctgtggga ggaggagccc
     1681 ttcctccagg gagaagagcc ccacctgagg gccctggagc tccttccggg cctgcacaag
     1741 ccacttgccg tggaagccaa gctggccagg ctctcctcca cgggggccgg gctggacgtg
     1801 ccccaggcgg acgtacccga ggtcaccacg cagcacccct cccggacaga tctgctggag
     1861 cctggtgacc tcaggtctga agctgaggcg gccgacgacc tcctgcccag gactagaaca
     1921 caaccggcca agggcactgg gagaaaggct ttaaatctgc ccacatttgt ggagagggaa
     1981 agcgatctgc cggcttctgg acctgatctc agggaggttg acctgggccc gggagtgacc
     2041 gaggaggtgg tgttggcagc agagcccagt gtgggagccg agggtgaagc ccaggtggcc
     2101 ttggaggctc cgcatcagtc tctgctggcc aagacaactg cgagaaggga cagtatggag
     2161 gtggcagtgc tgaccgatga cctactgccc actgtggacc agcaggaggt gcttgcccgc
     2221 ttgcagctgt tggagcagca ggtggtcggg ggcgagcagg ccaagaacaa ggacctgaag
     2281 gagaagcaca ggcggcggaa gcggtatgca gacgagcgca agaagcagtt ggtggcggcc
     2341 ctgcagaact cagacgagga cagcggggac tgggtgctgc tcaacgtcta cgactccatc
     2401 caggaggaag tgagggccaa gagcaagctg ctggagaaga tgcagaggaa gcttcgggcg
     2461 gcagaggtgg agatcaaaga tctgcagtca gagtttgagc tagagaagat agattacttg
     2521 gccaccatcc gtcggcagga acgtgacttt atgctcttcc agcagctctt ggagcaggtg
     2581 cagcccctga ttcgccggga ctgtaactat agcaacctgg agaagataag gcgcgagtcc
     2641 tgctgggatg aggataatgg cttctggaag atcccccagc ccatcatcat aaaaaccagc
     2701 ctcccagtag cagtttcaac agggctacag aacagatcag cccgcaaaaa ctccacagcg
     2761 gacaatggtg aaccaggcac gcaggatgaa gaccgctaca ggctgatgct cagtcggagt
     2821 gacagtgaaa acatcgccag taactacttc cggcccaagc gggccaccca gatcctcagt
     2881 gcggatccca tgaagagcct cgcatatcgc agctcgccgc caggcctcag ctccccactt
     2941 ggcaacagct ctgccatccc acccacccag gcccctgaaa tgccccagcc tcggcccttc
     3001 cgccttgagt cccttgacat ccccttcacc aaggccaggc gtaagaaaag caaaagcagc
     3061 tttggcggtg agcctctgtg aacacattgc ctgctgctgc cctgcctttg ggctctgtga
     3121 gactgccagg cccttccggg gcaggcccag ctaggtctcc tcccacctgc cccccacagt
     3181 actgggggca cccgaggggg ccctggccct gggaaagcac tgtcccctcc ctgctaccca
     3241 gagagcccac gctgcccagg gcatgagctc ctcggagact ggaccatcct tggagagacc
     3301 tgctccggct ctccacgcca cgtcagcgtt ttcatctgcc ctccactgtg cccaccagca
     3361 ttgtcctgtg cctccatggg ctcagaaacc tcagctcagc ctcaaggcct tcactagcag
     3421 cccgattgag tgggacagtg acttccgcat gggtcaagct caatgtcttg gcgatggaaa
     3481 attgtgcctc catctactag gccccgcttg gtgaggaagc cctgagggac gggcacagga
     3541 gtcctggagc agctgttccc acactgccta cgctcagctg gtctgcggcg cagaggccac
     3601 tccacgttaa gctgccctaa taaactgcct ttagctgctg aactgccctt ctctgatcct
     3661 ctgatagcat cactggggcc cctcgctgcc gctgcctggt cttcatgggg aagctctttc
     3721 tggagcaggg attcttaact gcctgtaggc tccagggtct ctgcaatccc ctgtaatttg
     3781 gggctggggc cttgttccta gtcgaatctg tcctgggcca gtgaagaccg aggaggtggc
     3841 ccgagttgac gccgccactg ccccagatcc tgtcctgaac gcgacggccc agaccaggac
     3901 gactaggttg aagaggcggg acgcacactt ctgtcccaag ctccggcggg aagcgggttc
     3961 tgggcgctag gcggaagccc gggatgggcg gaaccccggg atgggcggaa ccaaggggct
     4021 agtaaccctg ttgattggtc gcggcagcag agctgtctct ctaggattga gccttttcct
     4081 ttggagaggc ggagccgcgt gccccttcca ccaataggat tcagagtatc cgcctcctac
     4141 ggttcacttc cggccgcgct ccccgcccct caccatccga gcagcggc
//
LOCUS       XM_032615486            3028 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PTEN induced kinase 1 (PINK1), transcript
            variant X1, mRNA.
ACCESSION   XM_032615486
VERSION     XM_032615486.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3028
                     /gene="PINK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 11 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116745079"
     CDS             74..1828
                     /gene="PINK1"
                     /codon_start=1
                     /product="serine/threonine-protein kinase PINK1,
                     mitochondrial isoform X1"
                     /protein_id="XP_032471377.1"
                     /db_xref="GeneID:116745079"
                     /translation="MAVRQALGRGLQLGRALLLRFTAKPGPTYGWGRPERPGPAAGWG
                     RGERPGQAAGPGAELRRLGLGLPGRYRFFRQSVAGLAARLQRQFVGRPRGGAGPCGRA
                     VFLAFGLGLGLIEEKQAESRRAASACEEIQAVFTQKNKLLPDPLDARRWQGFRLEEYL
                     IGKSIGKGCSAAVYEATMPVLPQNQQVAGSIGLLPGRGPEIIPRGEEEQAPLAPAFPL
                     AIKMMWNISAGSSSEAIFSTMSQELVPASRVALAGEYGAVAHRRSKGGPKQLAAHPNV
                     IRVFRAFTSSVPLLPGALLDYPDVLPPRLHPEGLGHGRTLFLVMKNYSCTLRQYLRGN
                     SPSPRLATVMTLQLLEGVAHLVQQGVAHRDLKSDNVLVEPDADGCPWLVITDFGCCLA
                     DERVGLQLPFTSWYVDRGGNGCLMAPEVSTACPGPRAVIDYSKADAWAVGALAYEIFG
                     LPNPFYGQGSRAHLESRSYQEAQLPALPESVPPEARQLVRSLLQRDASKRPSARVAAN
                     LLHLSLWGERTLALKDLKPDKMIGWLLRQSAATLLASRLAEKNCVETKMKMLFLANLE
                     YEALSQAALLLCSWRAAL"
     misc_feature    566..1618
                     /gene="PINK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, Pten INduced Kinase 1; Region: STKc_PINK1;
                     cd14018"
                     /db_xref="CDD:270920"
     misc_feature    order(566..580,590..592,728..730,734..736,902..904,
                     1031..1042,1049..1051,1055..1057,1163..1165,1169..1171,
                     1175..1180,1184..1186,1229..1231,1238..1240,1304..1315)
                     /gene="PINK1"
                     /note="active site"
                     /db_xref="CDD:270920"
     misc_feature    order(566..580,590..592,728..730,734..736,902..904,
                     1031..1042,1049..1051,1163..1165,1169..1171,1175..1180,
                     1184..1186,1229..1231)
                     /gene="PINK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270920"
     misc_feature    order(578..580,1049..1051,1055..1057,1163..1165,
                     1169..1171,1175..1177,1238..1240,1304..1315)
                     /gene="PINK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270920"
     misc_feature    order(1226..1255,1262..1315)
                     /gene="PINK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270920"
ORIGIN      
        1 ccgcccccga agtttgttgt tttgtccggc gtcaccgacg cctgcggctc cggaaagacc
       61 tggctgcgga gccatggcgg tgcgacaggc gctgggccgg ggcctgcagc tgggccgagc
      121 gctgctactg cgcttcacgg ccaagcctgg cccgacctac ggctgggggc gaccggagcg
      181 gccgggcccc gcggcggggt ggggtcgcgg ggagcgcccg ggccaggccg cgggacccgg
      241 cgcggagctg cgcaggctcg ggctcgggct ccccggccga taccgcttct tccgtcagtc
      301 ggtagccggg ctggcggcgc ggctccagag acagttcgtg gggcggcccc ggggcggcgc
      361 gggcccttgc ggccgggccg tctttctggc cttcgggctg ggtctgggtc tcatagagga
      421 gaagcaagcg gagagccgtc gggcggcctc ggcctgtgag gagattcagg cagttttcac
      481 ccagaaaaac aagctgctcc ctgacccatt ggacgctaga cgctggcagg gtttccggct
      541 ggaggagtat ctgatcggga agtccattgg caagggctgc agtgccgctg tctatgaggc
      601 caccatgcct gtgttgcccc agaaccagca agtggcaggg agtatcgggc ttcttccagg
      661 gagaggccca gagatcattc cacgaggaga agaggagcaa gccccactgg cccctgcctt
      721 tcccttggcc atcaagatga tgtggaacat ctcggcaggc tcatccagcg aagccatctt
      781 tagcacaatg agccaggagc tcgtcccagc cagtcgagtg gccttggccg gggagtatgg
      841 agcagtcgct cacagaagat ccaagggggg tcccaagcag ctggccgcac accccaacgt
      901 catccgcgtc ttccgcgcct tcacgtcgtc tgtgccactg ctgccagggg ccctgctcga
      961 ctaccctgac gtgctgcccc cgcgccttca ccccgaaggc ctgggccacg ggcggacact
     1021 cttccttgtg atgaagaact actcctgtac cctgcgccag tatcttcgtg ggaacagccc
     1081 aagcccccgc ctggccaccg tgatgactct gcagctcctg gaaggggtgg ctcacctggt
     1141 gcagcagggc gtcgcacaca gagacctgaa atccgacaac gtcctcgtgg agccagacgc
     1201 agacggctgc ccctggttgg tgatcacaga cttcggctgc tgcctggctg atgagcgcgt
     1261 cggcctgcag ttgcctttca ccagttggta tgtggaccgt ggtggaaacg gctgcctgat
     1321 ggcccctgag gtgtccacag cctgccctgg cccccgggca gtgatcgact acagcaaggc
     1381 tgatgcctgg gcggtgggag cgctcgccta cgaaatcttc gggctcccca atccctttta
     1441 cggccagggc agcagggccc accttgaaag ccgcagttac caagaagctc agctgccagc
     1501 actgcccgag tcggtgcctc cggaggcgag acagctggtg aggtcgctgc tccagcgaga
     1561 cgccagcaag aggccatctg cccgagtagc cgctaacctg cttcatttaa gcctctgggg
     1621 tgagcgcact ctagccctga aggacctgaa accagacaag atgattggct ggctcctccg
     1681 acagtcagcg gccactctgc tggccagcag gcttgcagag aagaactgtg tggaaacaaa
     1741 aatgaagatg ttattcctgg ccaacctgga gtatgaagcg ctgagtcagg cagccctcct
     1801 cctctgctcg tggagggcgg ccctgtgata gctgatgtag ctggtgaatg aattactgaa
     1861 agaacttcca gtatctgtgt cgtgatggtc tgtgaatgct gagggagggg ctcctaggtg
     1921 aggggtgtga gagtcggtca ggagaaaaga tggtgcaggg tgggccagtc agccagagag
     1981 aaggcctcgg gtttggcaag cggaaggaac agctcgagtt cacagtctag ctactgactc
     2041 gctcaagcag tgtgattttg atgcatcata taacctgtgt ggactgaagt tctcttacct
     2101 ctaaaatgaa gaaactggtc tggatagagg tcggcaaact tcgtctgtag agggccagta
     2161 ctcaggctgt tgcagctact caactctccc attgcagcgc aaaggcagcc ttaaatatgt
     2221 aagcaagtca gtgtggcggc ttcccgataa cgcttcattt agggacacag atttggattt
     2281 cacgtgtcac taaatagtct caattgtctc cagccactta aacgtaaaaa ctgttcttag
     2341 cttgcaggcc tacaaaaaac aggcagcagg ccagactgac ccacaggcca agtttgccaa
     2401 cccctcatct agacgaattc agagggccta actaactcta aaaagaaacg ctggctaatc
     2461 accaggcccc tttgtgtatc agcgctaaaa atgtgactag ctctctgcgt acaaatccaa
     2521 aggaatgagc ccgctgtacc aggcgagggg ctactcgggt gtaagctgct gaccaaaaag
     2581 tcccacctta agctcgtgtc ctatcttcac agacctctga aaagttagtt agtgatcgag
     2641 caggtgaggc cgagctgagg cgggtcagac ctgcgttcca cgttagagtc tgcgtgttac
     2701 ctgcgctaag gcaaacgttc gcacgggtca gggtatgcag gtatcagagt gaaaaacgct
     2761 gaagtgaggc ctgaggtgtg ggagcctctg cacttcagtc acgcgtcctg gaacagctct
     2821 gagggtgctc tggaggaagc atcgccatgg agctcgtcca gctactgaat tgagtctagc
     2881 ggagctcacg tgactgatga aatgggaatt aacagtacag tgttttaaac ttgctaattt
     2941 tccccttctg actagtgttt cttacaggaa ttgtgaagaa ttaaatgcat atttccagct
     3001 gcagaacatg tctgtgcctg gaactgaa
//
LOCUS       XM_032615495            3026 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PTEN induced kinase 1 (PINK1), transcript
            variant X2, mRNA.
ACCESSION   XM_032615495
VERSION     XM_032615495.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3026
                     /gene="PINK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116745079"
     CDS             75..1826
                     /gene="PINK1"
                     /codon_start=1
                     /product="serine/threonine-protein kinase PINK1,
                     mitochondrial isoform X2"
                     /protein_id="XP_032471386.1"
                     /db_xref="GeneID:116745079"
                     /translation="MAVRQALGRGLQLGRALLLRFTAKPGPTYGWGRPERPGPAAGWG
                     RGERPGQAAGPGAELRRLGLGLPGRYRFFRQSVAGLAARLQRQFVGRPRGGAGPCGRA
                     VFLAFGLGLGLIEEKQAESRRAASACEEIQAVFTQKNKLLPDPLDARRWQGFRLEEYL
                     IGKSIGKGCSAAVYEATMPVLPQNQQVAGSIGLLPGRGPEIIPRGEEEQAPLAPAFPL
                     AIKMMWNISAGSSSEAIFSTMSQELVPASRVALAGEYGAVAHRSKGGPKQLAAHPNVI
                     RVFRAFTSSVPLLPGALLDYPDVLPPRLHPEGLGHGRTLFLVMKNYSCTLRQYLRGNS
                     PSPRLATVMTLQLLEGVAHLVQQGVAHRDLKSDNVLVEPDADGCPWLVITDFGCCLAD
                     ERVGLQLPFTSWYVDRGGNGCLMAPEVSTACPGPRAVIDYSKADAWAVGALAYEIFGL
                     PNPFYGQGSRAHLESRSYQEAQLPALPESVPPEARQLVRSLLQRDASKRPSARVAANL
                     LHLSLWGERTLALKDLKPDKMIGWLLRQSAATLLASRLAEKNCVETKMKMLFLANLEY
                     EALSQAALLLCSWRAAL"
     misc_feature    567..1616
                     /gene="PINK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, Pten INduced Kinase 1; Region: STKc_PINK1;
                     cd14018"
                     /db_xref="CDD:270920"
     misc_feature    order(567..581,591..593,729..731,735..737,900..902,
                     1029..1040,1047..1049,1053..1055,1161..1163,1167..1169,
                     1173..1178,1182..1184,1227..1229,1236..1238,1302..1313)
                     /gene="PINK1"
                     /note="active site"
                     /db_xref="CDD:270920"
     misc_feature    order(567..581,591..593,729..731,735..737,900..902,
                     1029..1040,1047..1049,1161..1163,1167..1169,1173..1178,
                     1182..1184,1227..1229)
                     /gene="PINK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270920"
     misc_feature    order(579..581,1047..1049,1053..1055,1161..1163,
                     1167..1169,1173..1175,1236..1238,1302..1313)
                     /gene="PINK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270920"
     misc_feature    order(1224..1253,1260..1313)
                     /gene="PINK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270920"
ORIGIN      
        1 gccgcccccg aagtttgttg ttttgtccgg cgtcaccgac gcctgcggct ccggaaagac
       61 ctggctgcgg agccatggcg gtgcgacagg cgctgggccg gggcctgcag ctgggccgag
      121 cgctgctact gcgcttcacg gccaagcctg gcccgaccta cggctggggg cgaccggagc
      181 ggccgggccc cgcggcgggg tggggtcgcg gggagcgccc gggccaggcc gcgggacccg
      241 gcgcggagct gcgcaggctc gggctcgggc tccccggccg ataccgcttc ttccgtcagt
      301 cggtagccgg gctggcggcg cggctccaga gacagttcgt ggggcggccc cggggcggcg
      361 cgggcccttg cggccgggcc gtctttctgg ccttcgggct gggtctgggt ctcatagagg
      421 agaagcaagc ggagagccgt cgggcggcct cggcctgtga ggagattcag gcagttttca
      481 cccagaaaaa caagctgctc cctgacccat tggacgctag acgctggcag ggtttccggc
      541 tggaggagta tctgatcggg aagtccattg gcaagggctg cagtgccgct gtctatgagg
      601 ccaccatgcc tgtgttgccc cagaaccagc aagtggcagg gagtatcggg cttcttccag
      661 ggagaggccc agagatcatt ccacgaggag aagaggagca agccccactg gcccctgcct
      721 ttcccttggc catcaagatg atgtggaaca tctcggcagg ctcatccagc gaagccatct
      781 ttagcacaat gagccaggag ctcgtcccag ccagtcgagt ggccttggcc ggggagtatg
      841 gagcagtcgc tcacagatcc aaggggggtc ccaagcagct ggccgcacac cccaacgtca
      901 tccgcgtctt ccgcgccttc acgtcgtctg tgccactgct gccaggggcc ctgctcgact
      961 accctgacgt gctgcccccg cgccttcacc ccgaaggcct gggccacggg cggacactct
     1021 tccttgtgat gaagaactac tcctgtaccc tgcgccagta tcttcgtggg aacagcccaa
     1081 gcccccgcct ggccaccgtg atgactctgc agctcctgga aggggtggct cacctggtgc
     1141 agcagggcgt cgcacacaga gacctgaaat ccgacaacgt cctcgtggag ccagacgcag
     1201 acggctgccc ctggttggtg atcacagact tcggctgctg cctggctgat gagcgcgtcg
     1261 gcctgcagtt gcctttcacc agttggtatg tggaccgtgg tggaaacggc tgcctgatgg
     1321 cccctgaggt gtccacagcc tgccctggcc cccgggcagt gatcgactac agcaaggctg
     1381 atgcctgggc ggtgggagcg ctcgcctacg aaatcttcgg gctccccaat cccttttacg
     1441 gccagggcag cagggcccac cttgaaagcc gcagttacca agaagctcag ctgccagcac
     1501 tgcccgagtc ggtgcctccg gaggcgagac agctggtgag gtcgctgctc cagcgagacg
     1561 ccagcaagag gccatctgcc cgagtagccg ctaacctgct tcatttaagc ctctggggtg
     1621 agcgcactct agccctgaag gacctgaaac cagacaagat gattggctgg ctcctccgac
     1681 agtcagcggc cactctgctg gccagcaggc ttgcagagaa gaactgtgtg gaaacaaaaa
     1741 tgaagatgtt attcctggcc aacctggagt atgaagcgct gagtcaggca gccctcctcc
     1801 tctgctcgtg gagggcggcc ctgtgatagc tgatgtagct ggtgaatgaa ttactgaaag
     1861 aacttccagt atctgtgtcg tgatggtctg tgaatgctga gggaggggct cctaggtgag
     1921 gggtgtgaga gtcggtcagg agaaaagatg gtgcagggtg ggccagtcag ccagagagaa
     1981 ggcctcgggt ttggcaagcg gaaggaacag ctcgagttca cagtctagct actgactcgc
     2041 tcaagcagtg tgattttgat gcatcatata acctgtgtgg actgaagttc tcttacctct
     2101 aaaatgaaga aactggtctg gatagaggtc ggcaaacttc gtctgtagag ggccagtact
     2161 caggctgttg cagctactca actctcccat tgcagcgcaa aggcagcctt aaatatgtaa
     2221 gcaagtcagt gtggcggctt cccgataacg cttcatttag ggacacagat ttggatttca
     2281 cgtgtcacta aatagtctca attgtctcca gccacttaaa cgtaaaaact gttcttagct
     2341 tgcaggccta caaaaaacag gcagcaggcc agactgaccc acaggccaag tttgccaacc
     2401 cctcatctag acgaattcag agggcctaac taactctaaa aagaaacgct ggctaatcac
     2461 caggcccctt tgtgtatcag cgctaaaaat gtgactagct ctctgcgtac aaatccaaag
     2521 gaatgagccc gctgtaccag gcgaggggct actcgggtgt aagctgctga ccaaaaagtc
     2581 ccaccttaag ctcgtgtcct atcttcacag acctctgaaa agttagttag tgatcgagca
     2641 ggtgaggccg agctgaggcg ggtcagacct gcgttccacg ttagagtctg cgtgttacct
     2701 gcgctaaggc aaacgttcgc acgggtcagg gtatgcaggt atcagagtga aaaacgctga
     2761 agtgaggcct gaggtgtggg agcctctgca cttcagtcac gcgtcctgga acagctctga
     2821 gggtgctctg gaggaagcat cgccatggag ctcgtccagc tactgaattg agtctagcgg
     2881 agctcacgtg actgatgaaa tgggaattaa cagtacagtg ttttaaactt gctaattttc
     2941 cccttctgac tagtgtttct tacaggaatt gtgaagaatt aaatgcatat ttccagctgc
     3001 agaacatgtc tgtgcctgga actgaa
//
LOCUS       XM_032615502            1848 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PTEN induced kinase 1 (PINK1), transcript
            variant X3, mRNA.
ACCESSION   XM_032615502
VERSION     XM_032615502.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1848
                     /gene="PINK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116745079"
     CDS             77..1705
                     /gene="PINK1"
                     /codon_start=1
                     /product="serine/threonine-protein kinase PINK1,
                     mitochondrial isoform X3"
                     /protein_id="XP_032471393.1"
                     /db_xref="GeneID:116745079"
                     /translation="MAVRQALGRGLQLGRALLLRFTAKPGPTYGWGRPERPGPAAGWG
                     RGERPGQAAGPGAELRRLGLGLPGRYRFFRQSVAGLAARLQRQFVGRPRGGAGPCGRA
                     VFLAFGLGLGLIEEKQAESRRAASACEEIQAVFTQKNKLLPDPLDARRWQGFRLEEYL
                     IGKSIGKGCSAAVYEATMPVLPQNQQVAGSIGLLPGRGPEIIPRGEEEQAPLAPAFPL
                     AIKMMWNISAGSSSEAIFSTMSQELVPASRVALAGEYGAVAHRRSKGGPKQLAAHPNV
                     IRVFRAFTSSVPLLPGALLDYPDVLPPRLHPEGLGHGRTLFLVMKNYSCTLRQYLRGN
                     SPSPRLATVMTLQLLEGVAHLVQQGVAHRDLKSDNVLVEPDADGCPWLVITDFGCCLA
                     DERVGLQLPFTSWYVDRGGNGCLMAPEVSTACPGPRAVIDYSKADAWAVGALAYEIFG
                     LPNPFYGQGSRAHLESRSYQEAQLPALPESVPPEARQLVRSLLQRDASKTRLLGLPGW
                     GGSSSNAHCPPPPTNVYPWKSQECVSEAICPSSR"
     misc_feature    569..1573
                     /gene="PINK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, Pten INduced Kinase 1; Region: STKc_PINK1;
                     cd14018"
                     /db_xref="CDD:270920"
     misc_feature    order(569..583,593..595,731..733,737..739,905..907,
                     1034..1045,1052..1054,1058..1060,1166..1168,1172..1174,
                     1178..1183,1187..1189,1232..1234,1241..1243,1307..1318)
                     /gene="PINK1"
                     /note="active site"
                     /db_xref="CDD:270920"
     misc_feature    order(569..583,593..595,731..733,737..739,905..907,
                     1034..1045,1052..1054,1166..1168,1172..1174,1178..1183,
                     1187..1189,1232..1234)
                     /gene="PINK1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270920"
     misc_feature    order(581..583,1052..1054,1058..1060,1166..1168,
                     1172..1174,1178..1180,1241..1243,1307..1318)
                     /gene="PINK1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270920"
     misc_feature    order(1229..1258,1265..1318)
                     /gene="PINK1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270920"
ORIGIN      
        1 gcgccgcccc cgaagtttgt tgttttgtcc ggcgtcaccg acgcctgcgg ctccggaaag
       61 acctggctgc ggagccatgg cggtgcgaca ggcgctgggc cggggcctgc agctgggccg
      121 agcgctgcta ctgcgcttca cggccaagcc tggcccgacc tacggctggg ggcgaccgga
      181 gcggccgggc cccgcggcgg ggtggggtcg cggggagcgc ccgggccagg ccgcgggacc
      241 cggcgcggag ctgcgcaggc tcgggctcgg gctccccggc cgataccgct tcttccgtca
      301 gtcggtagcc gggctggcgg cgcggctcca gagacagttc gtggggcggc cccggggcgg
      361 cgcgggccct tgcggccggg ccgtctttct ggccttcggg ctgggtctgg gtctcataga
      421 ggagaagcaa gcggagagcc gtcgggcggc ctcggcctgt gaggagattc aggcagtttt
      481 cacccagaaa aacaagctgc tccctgaccc attggacgct agacgctggc agggtttccg
      541 gctggaggag tatctgatcg ggaagtccat tggcaagggc tgcagtgccg ctgtctatga
      601 ggccaccatg cctgtgttgc cccagaacca gcaagtggca gggagtatcg ggcttcttcc
      661 agggagaggc ccagagatca ttccacgagg agaagaggag caagccccac tggcccctgc
      721 ctttcccttg gccatcaaga tgatgtggaa catctcggca ggctcatcca gcgaagccat
      781 ctttagcaca atgagccagg agctcgtccc agccagtcga gtggccttgg ccggggagta
      841 tggagcagtc gctcacagaa gatccaaggg gggtcccaag cagctggccg cacaccccaa
      901 cgtcatccgc gtcttccgcg ccttcacgtc gtctgtgcca ctgctgccag gggccctgct
      961 cgactaccct gacgtgctgc ccccgcgcct tcaccccgaa ggcctgggcc acgggcggac
     1021 actcttcctt gtgatgaaga actactcctg taccctgcgc cagtatcttc gtgggaacag
     1081 cccaagcccc cgcctggcca ccgtgatgac tctgcagctc ctggaagggg tggctcacct
     1141 ggtgcagcag ggcgtcgcac acagagacct gaaatccgac aacgtcctcg tggagccaga
     1201 cgcagacggc tgcccctggt tggtgatcac agacttcggc tgctgcctgg ctgatgagcg
     1261 cgtcggcctg cagttgcctt tcaccagttg gtatgtggac cgtggtggaa acggctgcct
     1321 gatggcccct gaggtgtcca cagcctgccc tggcccccgg gcagtgatcg actacagcaa
     1381 ggctgatgcc tgggcggtgg gagcgctcgc ctacgaaatc ttcgggctcc ccaatccctt
     1441 ttacggccag ggcagcaggg cccaccttga aagccgcagt taccaagaag ctcagctgcc
     1501 agcactgccc gagtcggtgc ctccggaggc gagacagctg gtgaggtcgc tgctccagcg
     1561 agacgccagc aagacacggc tcctgggcct tccagggtgg ggaggctctt ccagcaatgc
     1621 acactgcccc ccgcccccca ccaatgtgta cccatggaaa agccaggagt gtgtgtcaga
     1681 ggccatctgc ccgagtagcc gctaacctgc ttcatttaag cctctggggt gagcgcactc
     1741 tagccctgaa ggacctgaaa ccagacaaga tgattggctg gctcctccga cagtcagcgg
     1801 ccactctgct ggccagcagg cttgcagaga agaactgtgt ggaaacaa
//
LOCUS       XR_004347262            1865 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PTEN induced kinase 1 (PINK1), transcript
            variant X4, misc_RNA.
ACCESSION   XR_004347262
VERSION     XR_004347262.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1865
                     /gene="PINK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116745079"
     misc_RNA        1..1865
                     /gene="PINK1"
                     /product="PTEN induced kinase 1, transcript variant X4"
                     /db_xref="GeneID:116745079"
ORIGIN      
        1 cgccgccccc gaagtttgtt gttttgtccg gcgtcaccga cgcctgcggc tccggaaaga
       61 cctggctgcg gagccatggc ggtgcgacag gcgctgggcc ggggcctgca gctgggccga
      121 gcgctgctac tgcgcttcac ggccaagcct ggcccgacct acggctgggg gcgaccggag
      181 cggccgggcc ccgcggcggg gtggggtcgc ggggagcgcc cgggccaggc cgcgggaccc
      241 ggcgcggagc tgcgcaggct cgggctcggg ctccccggcc gataccgctt cttccgtcag
      301 tcggtagccg ggctggcggc gcggctccag agacagttcg tggggcggcc ccggggcggc
      361 gcgggccctt gcggccgggc cgtctttctg gccttcgggc tgggtctggg tctcatagag
      421 gagaagcaag cggagagccg tcgggcggcc tcggcctgtg aggagattca ggcagttttc
      481 acccagaaaa acaagctgct ccctgaccca ttggacgcta gacgctggca gggtttccgg
      541 ctggaggagt atctgatcgg gaagtccatt ggcaagggct gcagtgccgc tgtctatgag
      601 gccaccatgc ctgtgttgcc ccagaaccag caagtggcag ggagtatcgg gcttcttcca
      661 gggagaggcc cagagatcat tccacgagga gaagaggagc aagccccact ggcccctgcc
      721 tttcccttgg ccatcaagat gatgtggaac atctcggcag gctcatccag cgaagccatc
      781 tttagcacaa tgagccagga gctcgtccca gccagtcgag tggccttggc cggggagtat
      841 ggagcagtcg ctcacagaag atccaagggg ggtcccaagc agctggccgc acaccccaac
      901 gtcatccgcg tcttccgcgc cttcacgtcg tctgtgccac tgctgccagg ggccctgctc
      961 gactaccctg acgtgctgcc cccgcgcctt caccccgaag gcctgggcca cgggcggaca
     1021 ctcttccttg tgatgaagaa ctactcctgt accctgcgcc agtatcttcg tgggaacagc
     1081 ccaagccccc gcctggccac cgtgatgact ctgcagctcc tggaaggggt ggctcacctg
     1141 gtgcagcagg gcgtcgcaca cagagacctg aaatccgaca acgtcctcgt ggagccagac
     1201 gcagacggct gcccctggtt ggtgatcaca gacttcggct gctgcctggc tgatgagcgc
     1261 gtcggcctgc agttgccttt caccagttgg tatgtggacc gtggtggaaa cggctgcctg
     1321 atggcccctg aggtgtccac agcctgccct ggcccccggg cagtgatcga ctacagcaag
     1381 gctgatgcct gggcggtggg agcgctcgcc tacgaaatct tcgggctccc caatcccttt
     1441 tacggccagg gcagcagggc ccaccttgaa agccgcagtt accaagaagc tcagctgcca
     1501 gcactgcccg agtcggtgcc tccggaggcg agacagctgg tgaggtcgct gctccagcga
     1561 gacgccagca aggtccggtt gaggtggcat gtttagtggc aacagcctgg acagaccagg
     1621 gctcaaactc ctgtcctacc acttacccct caccgtgtgc ggcaggctgt cacggtcacg
     1681 gtcacggtag gtgctcgctg ctgcccatca ttaagtcgtg acaactcccc tcactccaga
     1741 cacggctcct gggccttcca gggtggggag gctcttccag caatgcacac tgccccccgc
     1801 cccccaccaa tgtgtaccca tggaaaagcc aggagtgtgt gtcagaggcc atctgcccga
     1861 gtagc
//
LOCUS       XR_004347263            1818 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PTEN induced kinase 1 (PINK1), transcript
            variant X5, misc_RNA.
ACCESSION   XR_004347263
VERSION     XR_004347263.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1818
                     /gene="PINK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116745079"
     misc_RNA        1..1818
                     /gene="PINK1"
                     /product="PTEN induced kinase 1, transcript variant X5"
                     /db_xref="GeneID:116745079"
ORIGIN      
        1 cgccgccccc gaagtttgtt gttttgtccg gcgtcaccga cgcctgcggc tccggaaaga
       61 cctggctgcg gagccatggc ggtgcgacag gcgctgggcc ggggcctgca gctgggccga
      121 gcgctgctac tgcgcttcac ggccaagcct ggcccgacct acggctgggg gcgaccggag
      181 cggccgggcc ccgcggcggg gtggggtcgc ggggagcgcc cgggccaggc cgcgggaccc
      241 ggcgcggagc tgcgcaggct cgggctcggg ctccccggcc gataccgctt cttccgtcag
      301 tcggtagccg ggctggcggc gcggctccag agacagttcg tggggcggcc ccggggcggc
      361 gcgggccctt gcggccgggc cgtctttctg gccttcgggc tgggtctggg tctcatagag
      421 gagaagcaag cggagagccg tcgggcggcc tcggcctgtg aggagattca ggcagttttc
      481 acccagaaaa acaagctgct ccctgaccca ttggacgcta gacgctggca gggtttccgg
      541 ctggaggagt atctgatcgg gaagtccatt ggcaagggct gcagtgccgc tgtctatgag
      601 gccaccatgc ctgtgttgcc ccagaaccag caagtggcag ggagtatcgg gcttcttcca
      661 gggagaggcc cagagatcat tccacgagga gaagaggagc aagccccact ggcccctgcc
      721 tttcccttgg ccatcaagat gatgtggaac atctcggcag gctcatccag cgaagccatc
      781 tttagcacaa tgagccagga gctcgtccca gccagtcgag tggccttggc cggggagtat
      841 ggagcagtcg ctcacagaag atccaagggg ggtcccaagc agctggccgc acaccccaac
      901 gtcatccgcg tcttccgcgc cttcacgtcg tctgtgccac tgctgccagg ggccctgctc
      961 gactaccctg acgtgctgcc cccgcgcctt caccccgaag gcctgggcca cgggcggaca
     1021 ctcttccttg tgatgaagaa ctactcctgt accctgcgcc agtatcttcg tgggaacagc
     1081 ccaagccccc gcctggccac cgtgatgact ctgcagctcc tggaaggggt ggctcacctg
     1141 gtgcagcagg gcgtcgcaca cagagacctg aaatccgaca acgtcctcgt ggagccagac
     1201 gcagacggct gcccctggtt ggtgatcaca gacttcggct gctgcctggc tgatgagcgc
     1261 gtcggcctgc agttgccttt caccagttgg tatgtggacc gtggtggaaa cggctgcctg
     1321 atggcccctg aggtgtccac agcctgccct ggcccccggg cagtgatcga ctacagcaag
     1381 gctgatgcct gggcggtggg agcgctcgcc tacgaaatct tcgggctccc caatcccttt
     1441 tacggccagg gcagcagggc ccaccttgaa agccgcagtt accaagaagc tcagctgcca
     1501 gcactgcccg agtcggtgcc tccggaggcg agacagctgg tgaggtcgct gctccagcga
     1561 gacgccagca aggtccggtt gaggtggcat gtttagtggc aacagcctgg acagaccagg
     1621 gctcaaactc ctgtcctacc acttacccct caccgtgtgc ggcaggctgt cacggtcacg
     1681 gtcacgaggc catctgcccg agtagccgct aacctgcttc atttaagcct ctggggtgag
     1741 cgcactctag ccctgaagga cctgaaacca gacaagatga ttggctggct cctccgacag
     1801 tcagcggcca ctctgctg
//
LOCUS       XM_032615520            1746 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            dolichyl-diphosphooligosaccharide--protein glycosyltransferase
            non-catalytic subunit (DDOST), mRNA.
ACCESSION   XM_032615520
VERSION     XM_032615520.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1746
                     /gene="DDOST"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 5 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116745101"
     CDS             147..1466
                     /gene="DDOST"
                     /codon_start=1
                     /product="dolichyl-diphosphooligosaccharide--protein
                     glycosyltransferase 48 kDa subunit"
                     /protein_id="XP_032471411.1"
                     /db_xref="GeneID:116745101"
                     /translation="MGLGAAVRAWSILWLLLPLLGLVGASGPRTLVLLDNLNLRETHS
                     LFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISTF
                     IDGGGRVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADT
                     ENLLKAPTIVGKSSLNPVLFRGVGMVADPDNPLVLDILTGASTSYSFFPDKPITQYPH
                     AVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKAAPGSQRYSQTGNYELAV
                     ALSRWVFKEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIEQLSDGKWVPFDGD
                     DIQLEFVRIDPFVRTFLKRKAGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVS
                     VRPLQHTQYERFIPSAYPYYASAFSMMVGLFIFSVVFLHMKEKEKSD"
     misc_feature    231..1445
                     /gene="DDOST"
                     /note="Oligosaccharyltransferase 48 kDa subunit beta;
                     Region: DDOST_48kD; pfam03345"
                     /db_xref="CDD:460890"
ORIGIN      
        1 catccgagca gcggctccga acgcccagcc ccgacgtact cggatcactt ccgggttatc
       61 tccccgacca cgggccgcga ttgggcgact gtggaagaag cacttccggt gtccaggtgc
      121 ttgggttctt tggcaggagc aggaagatgg ggctcggcgc cgcggtccgt gcttggtcca
      181 tcttgtggct gctgctgccc ttgcttggcc tggtcggcgc cagcggtccc cgcaccttgg
      241 tgctgctgga caacctcaac ctgcgggaga cgcattcgct tttcttccgg agcctgaagg
      301 atcggggctt tgtactcaca ttcaagaccg cagatgaccc cagcctgtcc ctcattaagt
      361 acggggagtt cctctatgac aatctcatca tcttctcccc ttcggtagaa gatttcgggg
      421 gaaatatcaa cgtggagacc atcagtacct ttatcgacgg tggaggccgt gtcctggtag
      481 ctgccagctc agacattggt gaccctcttc gagagctggg cagtgagtgt gggatcgaat
      541 ttgacgagga gaaaacagct gtcatcgacc atcacaacta tgacatctca gaccttggcc
      601 agcatacgct catcgtggcc gacacggaga acctgctcaa ggccccgacc atcgtgggga
      661 agtcgtctct gaatcctgtc ctctttcgag gtgtcgggat ggtggccgac cccgacaatc
      721 ctctggtgct ggacatcctg acaggcgctt ccacctccta ctccttcttc cccgataaac
      781 ccatcaccca gtacccccac gccgtgggga agaacaccct cctcatcgcg gggctgcagg
      841 ccaggaacaa cgcccgggtc atcttcagcg gctccctcga cttcttcagc gacgccttct
      901 tcaactcggc ggtgcagaag gccgcgcccg gctcccagag gtattcccag acaggcaact
      961 atgagctagc tgtggccctt tcccgctggg tgttcaagga ggagggtgtc ctacgtgtgg
     1021 ggcctgtgtc ccatcatcgg gtgggcgaga cagccccacc caacgcctac actgtcactg
     1081 acctagtgga gtacagcatc gtgattgagc agctctcaga cggcaaatgg gtcccctttg
     1141 atggtgatga catccagctg gagtttgtcc gcattgatcc ttttgtgagg accttcttga
     1201 agaggaaagc tggcaagtac agcgtccagt tcaagttgcc tgacgtgtac ggcgtgttcc
     1261 agttcaaagt ggattacaac cggctaggct acacgcactt gtactcctcc actcaggtgt
     1321 cggtgcggcc cctgcagcac acgcagtacg agcgcttcat cccctcggcc tatccctact
     1381 acgccagcgc cttctccatg atggtggggc tcttcatctt cagcgtcgtc ttcttacaca
     1441 tgaaggagaa ggagaagtct gactgagggg ccagcgcccc agactccttt caacagacat
     1501 ggagggtttt tataggattg ctttttctcc cctttatggt gggtcttttt ggggggtttt
     1561 gtttttttta aagccatgga cagtggcaca gcttacctca gcgggagatg gaacattgag
     1621 taccaagggg tggggggggt tagggaataa tttctatgtt tttccacctt gaatgctaag
     1681 tgtgttttca catgtgaagt caactctcat ttctaaaata aagagaaaca tcgccctcaa
     1741 acttca
//
LOCUS       XR_004347266             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745110),
            ncRNA.
ACCESSION   XR_004347266
VERSION     XR_004347266.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745110"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745110"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745110"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745110"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt cggcagcaca gatactaaaa ttggaacaat gcagagaaaa ttagcatggc
       61 ccctgcgcaa ggatgacaca caaatttgtg aagcattcca tattttt
//
LOCUS       XR_004347267             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745113),
            ncRNA.
ACCESSION   XR_004347267
VERSION     XR_004347267.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745113"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745113"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745113"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745113"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 atgcttgctt cagcagcata tatactaaaa ttggaatgat acagagaaga ttagcacggc
       61 cccggcgcaa ggatgacaca caaattcatg aagcgttcca tattttt
//
LOCUS       XR_004347272             103 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745117),
            ncRNA.
ACCESSION   XR_004347272
VERSION     XR_004347272.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..103
                     /gene="LOC116745117"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745117"
     ncRNA           1..103
                     /ncRNA_class="snRNA"
                     /gene="LOC116745117"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745117"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 ttgctttggc agcacatata ctaatattgg aatgatacag agaagattag catggcccct
       61 gtgcaaggat gacatgcaaa tttgtgaagc gttccatatt ttt
//
LOCUS       XR_004347273             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745121),
            ncRNA.
ACCESSION   XR_004347273
VERSION     XR_004347273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745121"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745121"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745121"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745121"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt tggcagcaca tatactaaag ctgtaacgat acagagaaga ttagcatggc
       61 ccctgcgcaa ggatgacatg caaattcatg aagtgttcca tattcta
//
LOCUS       XR_004347279             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745126),
            ncRNA.
ACCESSION   XR_004347279
VERSION     XR_004347279.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745126"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745126"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745126"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745126"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt cagcagcaca tacactaaaa ttggaaccat acagagaaga ttagcatggc
       61 ccctgtgcaa cgatgacacg gaaattcatg aagcgttcca aattttt
//
LOCUS       XR_004347281             164 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745130),
            ncRNA.
ACCESSION   XR_004347281
VERSION     XR_004347281.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..164
                     /gene="LOC116745130"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745130"
     ncRNA           1..164
                     /ncRNA_class="snRNA"
                     /gene="LOC116745130"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745130"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 atacttacct ggcaggggag ataccatgat catgaaggtg gttttcccag ggtgaggctc
       61 actcattgca ctgcgagtgt gctgacccct gcgatttccc caaatagggg aaactcgact
      121 gcgtaatttg tggtagtggg ggactgcgtg cgcgctctcc cctg
//
LOCUS       XR_004347284             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745133),
            ncRNA.
ACCESSION   XR_004347284
VERSION     XR_004347284.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745133"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745133"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745133"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745133"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cagcagcaca tatactaaaa ttggaatgat acagagaaga ttagcgtggc
       61 ccctgcgcga ggatgacatg caaattcgtg aagtgttccg tattttt
//
LOCUS       XR_004347285             106 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745136),
            ncRNA.
ACCESSION   XR_004347285
VERSION     XR_004347285.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..106
                     /gene="LOC116745136"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745136"
     ncRNA           1..106
                     /ncRNA_class="snRNA"
                     /gene="LOC116745136"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745136"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctt ggcagcacat atactaaaat tggaatgata cagagaagat tagaatggcc
       61 cctgcagaag gatgacatgc aaattcataa agtgttccat attttt
//
LOCUS       XR_004347288             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745142),
            ncRNA.
ACCESSION   XR_004347288
VERSION     XR_004347288.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745142"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745142"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745142"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745142"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt tggcagcaca catactaaaa ttggaacgct acagagaaga ttagcatggc
       61 ccgtgcacaa gggtgacacg caaatctgtg aagctttcca tattttt
//
LOCUS       XR_004347291             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745147),
            ncRNA.
ACCESSION   XR_004347291
VERSION     XR_004347291.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745147"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745147"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745147"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745147"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtactcgctt cagcagcacg tatactaaaa ttggaatgat acagagaaga ttagcacagc
       61 ccttgcgcaa ggatgacaca caaatttgtg aagcattcca tattttt
//
LOCUS       XR_004347294             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745152),
            ncRNA.
ACCESSION   XR_004347294
VERSION     XR_004347294.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745152"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745152"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745152"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745152"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gttctcactt cggcggcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 tcctgcgcga ggatgacacg caagttcgtg aagcgttcca tatttta
//
LOCUS       XR_004347295             109 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745154),
            ncRNA.
ACCESSION   XR_004347295
VERSION     XR_004347295.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..109
                     /gene="LOC116745154"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745154"
     ncRNA           1..109
                     /ncRNA_class="snRNA"
                     /gene="LOC116745154"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745154"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgatt cggcagcaca tatactaaaa ttggaatatg atacagagaa gattagcatg
       61 gtccctgtgc aaggatgaca cgcaaattcg tgaagcgttc tgtattttt
//
LOCUS       XR_004347297             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745156),
            ncRNA.
ACCESSION   XR_004347297
VERSION     XR_004347297.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745156"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745156"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745156"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745156"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcccgctt cggcagcaca tgtactaaaa ttggaacgat acagagaaga ttagaacggc
       61 ccctgcacaa ggataacgca caaattcatg aaatgttcca tattttt
//
LOCUS       XR_004347301             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745160),
            ncRNA.
ACCESSION   XR_004347301
VERSION     XR_004347301.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116745160"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745160"
     ncRNA           1..104
                     /ncRNA_class="snRNA"
                     /gene="LOC116745160"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745160"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctggctt cagcagcaca tatactaaaa ttggaacgat acagagatta gcatggtccc
       61 tgcgcaagga tgacatgcaa atttgtgaag tgttccatat tttt
//
LOCUS       XR_004347302             105 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745165),
            ncRNA.
ACCESSION   XR_004347302
VERSION     XR_004347302.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..105
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..105
                     /gene="LOC116745165"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745165"
     ncRNA           1..105
                     /ncRNA_class="snRNA"
                     /gene="LOC116745165"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745165"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt cagcagcaca tatactaaaa ttggaacgat agagaagact agcatggccc
       61 ctgtgcaagg atgacacgca aattcgtgaa gcattccata ttttt
//
LOCUS       XR_004347303             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745170),
            ncRNA.
ACCESSION   XR_004347303
VERSION     XR_004347303.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745170"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745170"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745170"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgcct cggtagcaca tatactaaaa ttggagtgat acagagaaaa ttagcatggc
       61 ccttgtgcaa ggatgacaca caaattcgtg aagcgttcca tatttct
//
LOCUS       XR_004347304             164 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745173),
            ncRNA.
ACCESSION   XR_004347304
VERSION     XR_004347304.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..164
                     /gene="LOC116745173"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745173"
     ncRNA           1..164
                     /ncRNA_class="snRNA"
                     /gene="LOC116745173"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745173"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 atacttacct ggcaggggag ataccatgat catgaaggtg gttttcccag ggtgaggctc
       61 actcattgca ctgcgagtgt gctgacccct gcgatttccc caaatagggg aaactcgact
      121 gcgtaatttg tggtagtggg ggactgcgtg cgcgctctcc cctg
//
LOCUS       XR_004347306             105 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745176),
            ncRNA.
ACCESSION   XR_004347306
VERSION     XR_004347306.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..105
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..105
                     /gene="LOC116745176"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745176"
     ncRNA           1..105
                     /ncRNA_class="snRNA"
                     /gene="LOC116745176"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745176"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gattagcttc tgctgtcata tactaaaacc ggaacgatac agagaagatt aacatggccc
       61 ctgcgcaagg atgacactca aattcgtgaa gcgttccata gtttt
//
LOCUS       XR_004347308             102 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745183),
            ncRNA.
ACCESSION   XR_004347308
VERSION     XR_004347308.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..102
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..102
                     /gene="LOC116745183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745183"
     ncRNA           1..102
                     /ncRNA_class="snRNA"
                     /gene="LOC116745183"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745183"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tatactaaaa ttggaacgat aaagattagc acggcccctg
       61 cgcaaggatg acacgcaaat tcgtgaagcg ttccatattt tt
//
LOCUS       XR_004347309             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745185),
            ncRNA.
ACCESSION   XR_004347309
VERSION     XR_004347309.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116745185"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745185"
     ncRNA           1..104
                     /ncRNA_class="snRNA"
                     /gene="LOC116745185"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745185"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 ataataagag cagcatgtat actaaaattg gaaggataca gagaagatta gcatggcccc
       61 tgcacaagag tgacatgcaa atgtgtgaag cgttccatat tttt
//
LOCUS       XR_004347310             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745189),
            ncRNA.
ACCESSION   XR_004347310
VERSION     XR_004347310.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745189"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745189"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745189"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745189"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctt cggcagcaca tatactgaaa ttggattgaa acagagaaga ttagtacggc
       61 ccctgcacaa ggatgacaca taaatccacg aagcatttca tattaaa
//
LOCUS       XR_004347312             106 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745192),
            ncRNA.
ACCESSION   XR_004347312
VERSION     XR_004347312.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..106
                     /gene="LOC116745192"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745192"
     ncRNA           1..106
                     /ncRNA_class="snRNA"
                     /gene="LOC116745192"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745192"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tagactaaaa ttggaacggt acagggaaga ttagcacagc
       61 cctgtgcaag gatgacacgc aaattcgtga agcgttccat attttt
//
LOCUS       XR_004347314             106 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745197),
            ncRNA.
ACCESSION   XR_004347314
VERSION     XR_004347314.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..106
                     /gene="LOC116745197"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745197"
     ncRNA           1..106
                     /ncRNA_class="snRNA"
                     /gene="LOC116745197"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745197"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctc cggcagcaca tatgctgaaa ttggaacaat acagagaaaa ttagcatggc
       61 ccctgtgcaa gatgacacac aaattcatgc agcgttccat actttt
//
LOCUS       XR_004347318             108 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745200),
            ncRNA.
ACCESSION   XR_004347318
VERSION     XR_004347318.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..108
                     /gene="LOC116745200"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745200"
     ncRNA           1..108
                     /ncRNA_class="snRNA"
                     /gene="LOC116745200"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745200"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtactcactt cagtagcaca tttactaaaa gtggaacaat acagagaaga ttagcatggc
       61 ttttgcacaa ggatgacatt gcaaattaat gaagtgttcc atatttaa
//
LOCUS       XR_004347319             110 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745202),
            ncRNA.
ACCESSION   XR_004347319
VERSION     XR_004347319.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..110
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..110
                     /gene="LOC116745202"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745202"
     ncRNA           1..110
                     /ncRNA_class="snRNA"
                     /gene="LOC116745202"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745202"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgatcactt cagcagcaca tatagtacta aaactggaat gaaacggaga agattagcat
       61 ggcccctgca caaggatgag atgaaaattc atgaagtgtt ccatattttt
//
LOCUS       XR_004347320             105 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745204),
            ncRNA.
ACCESSION   XR_004347320
VERSION     XR_004347320.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..105
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..105
                     /gene="LOC116745204"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745204"
     ncRNA           1..105
                     /ncRNA_class="snRNA"
                     /gene="LOC116745204"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745204"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gctgacttcg gccgcccata tactaaaatt gcagtgatac agagaagatt agcatggccc
       61 ctgtgcaagg atgacatgca aattcgtgaa gcgttccata ttaaa
//
LOCUS       XR_004347321             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745208),
            ncRNA.
ACCESSION   XR_004347321
VERSION     XR_004347321.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116745208"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745208"
     ncRNA           1..104
                     /ncRNA_class="snRNA"
                     /gene="LOC116745208"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745208"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt tggcagcaca tatggtaaaa ttggaacgat acagaggtta ccgtggcccc
       61 tgcacaagga tgagacacaa attcgtgaag tgttccatat tttt
//
LOCUS       XR_004347323             164 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745213),
            ncRNA.
ACCESSION   XR_004347323
VERSION     XR_004347323.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..164
                     /gene="LOC116745213"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745213"
     ncRNA           1..164
                     /ncRNA_class="snRNA"
                     /gene="LOC116745213"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745213"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 atacttacct ggcaggggag gtaccatgat cattaaggtg gttttcccag gacgaggctt
       61 actcattgca ctgcgagtgt gctgacgcct gcgatttctc caaatgggag aaactcgact
      121 gcataatttg tggtagtggg ggactgcgtg cgcgctttcc ccca
//
LOCUS       XR_004347329             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745217),
            ncRNA.
ACCESSION   XR_004347329
VERSION     XR_004347329.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745217"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745217"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745217"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gggctcactt cagcagcaca taggctagaa ttggaacaat acagagaaga ttagcatggt
       61 ccctgcacaa aaataatgtg caaatttatg aagtgttcta tattttt
//
LOCUS       XR_004347330             103 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745220),
            ncRNA.
ACCESSION   XR_004347330
VERSION     XR_004347330.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..103
                     /gene="LOC116745220"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745220"
     ncRNA           1..103
                     /ncRNA_class="snRNA"
                     /gene="LOC116745220"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745220"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 ttgctttggc agcacacatg ctaaaattgg aatgatacag agaagattag tctggcccct
       61 gcacaaggat aataaacaaa tttgtgaagc attccatatt gaa
//
LOCUS       XR_004347331             109 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745226),
            ncRNA.
ACCESSION   XR_004347331
VERSION     XR_004347331.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..109
                     /gene="LOC116745226"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745226"
     ncRNA           1..109
                     /ncRNA_class="snRNA"
                     /gene="LOC116745226"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745226"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gagtactcat ttcagcggct tgtatactaa aattggaatg atacagagaa gactagcacg
       61 gcttttgcac aaggatgaca tgcaaattct agaagcagtc catattttt
//
LOCUS       XR_004347332             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745229),
            ncRNA.
ACCESSION   XR_004347332
VERSION     XR_004347332.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116745229"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745229"
     ncRNA           1..104
                     /ncRNA_class="snRNA"
                     /gene="LOC116745229"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745229"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctt aggcagcaca catactacaa ctgggacgac gcagagatta gcatggcccc
       61 tgcgcaagga tgaaacgcaa attcgtgaag tgttccatat tttt
//
LOCUS       XR_004347333             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745235),
            ncRNA.
ACCESSION   XR_004347333
VERSION     XR_004347333.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745235"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745235"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745235"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745235"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gcactcgctt cagcagcaca tatactaaaa ctggaacgac acggagaaga ttagcatggc
       61 cgtggcgcaa ggattacacg caaattcgtg aagtgttcca tattttt
//
LOCUS       XR_004347336             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745240),
            ncRNA.
ACCESSION   XR_004347336
VERSION     XR_004347336.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745240"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745240"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745240"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745240"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtactcattt cagcagcaca tacactaaaa ttggaaccat acagagaaga ttagcattgt
       61 ccccaaacaa gggtgacatg cgaactcttg gaacattaca ctttttc
//
LOCUS       XR_004347338             109 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745246),
            ncRNA.
ACCESSION   XR_004347338
VERSION     XR_004347338.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..109
                     /gene="LOC116745246"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745246"
     ncRNA           1..109
                     /ncRNA_class="snRNA"
                     /gene="LOC116745246"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745246"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcttgc tttgacagca cgtatagtaa aactggaaca atacagagaa aattggcatg
       61 actcctacat acagatgaca cacagattcg tgaagtgcta catatgttt
//
LOCUS       XR_004347346             109 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745248),
            ncRNA.
ACCESSION   XR_004347346
VERSION     XR_004347346.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..109
                     /gene="LOC116745248"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745248"
     ncRNA           1..109
                     /ncRNA_class="snRNA"
                     /gene="LOC116745248"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745248"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt ctgcagcaca tatactaaaa aaaattggaa tgatacagtg aaggttagca
       61 tggcccctga gcaaggatga cacaaattcg tgaagcattc catatttaa
//
LOCUS       XR_004347349             103 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745254),
            ncRNA.
ACCESSION   XR_004347349
VERSION     XR_004347349.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..103
                     /gene="LOC116745254"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745254"
     ncRNA           1..103
                     /ncRNA_class="snRNA"
                     /gene="LOC116745254"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745254"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 ttgctttggc agcacatata ctaaaattgg aacaatacag agaggattag catagtccct
       61 gtgcaaggat tatatgcaaa tttgtgaagc atccattaaa aag
//
LOCUS       XR_004347352             165 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745262),
            ncRNA.
ACCESSION   XR_004347352
VERSION     XR_004347352.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..165
                     /gene="LOC116745262"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745262"
     ncRNA           1..165
                     /ncRNA_class="snRNA"
                     /gene="LOC116745262"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745262"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 atacttacct ggcaggggaa ataccatgat catgaagatg gttttcccaa tgatgaggct
       61 cacccattgc acctcgggtg tgctgacgct tgcgatttcc ccaaatgtgg gaaactcgac
      121 tgcgtaattt gtggtagtgg gggattgcgt gcgcgctttc cccct
//
LOCUS       XR_004347359             106 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745266),
            ncRNA.
ACCESSION   XR_004347359
VERSION     XR_004347359.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..106
                     /gene="LOC116745266"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745266"
     ncRNA           1..106
                     /ncRNA_class="snRNA"
                     /gene="LOC116745266"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745266"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtctttgctt tcgtaacaca tatactaaaa tgagaacgat cagagaagat taacatggcc
       61 cttgtgcaag aatgacatgc aaattcatga agggttccat ggtcat
//
LOCUS       XR_004347360             109 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745274),
            ncRNA.
ACCESSION   XR_004347360
VERSION     XR_004347360.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..109
                     /gene="LOC116745274"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745274"
     ncRNA           1..109
                     /ncRNA_class="snRNA"
                     /gene="LOC116745274"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745274"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gcgctctctt cggcagcaca tacggtaaaa ttagagagat acagagaaga ttagcatggc
       61 cactatgtaa gaataacgtg caaattcaaa caaagcgttt catagtttt
//
LOCUS       XR_004347363             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745283),
            ncRNA.
ACCESSION   XR_004347363
VERSION     XR_004347363.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116745283"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745283"
     ncRNA           1..104
                     /ncRNA_class="snRNA"
                     /gene="LOC116745283"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745283"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 ttgctagctt cggcagcaca tatacaaaaa ctggaacgat acagaggcta gtggggcccc
       61 tgtgcaagga cgacacgcaa atttgtgaag cgttccacgt tttt
//
LOCUS       XR_004347370             111 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745289),
            ncRNA.
ACCESSION   XR_004347370
VERSION     XR_004347370.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..111
                     /gene="LOC116745289"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745289"
     ncRNA           1..111
                     /ncRNA_class="snRNA"
                     /gene="LOC116745289"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745289"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gatgctcgac tcaacagtac ataacactaa aaaatttgaa ccatacagaa aagactagca
       61 tggcccctat gcaaagataa tatgcaaatt tgtgaaacac tccctatttt t
//
LOCUS       XR_004347375             106 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745300),
            ncRNA.
ACCESSION   XR_004347375
VERSION     XR_004347375.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..106
                     /gene="LOC116745300"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745300"
     ncRNA           1..106
                     /ncRNA_class="snRNA"
                     /gene="LOC116745300"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745300"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctt cagcagcaca tatactaaaa ttggaacaat gccgagaaga ttagcatggc
       61 cttgtgcaag aataatactc tatcctttta aggaaaaaac ttcatg
//
LOCUS       XR_004347376             106 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745307),
            ncRNA.
ACCESSION   XR_004347376
VERSION     XR_004347376.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..106
                     /gene="LOC116745307"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745307"
     ncRNA           1..106
                     /ncRNA_class="snRNA"
                     /gene="LOC116745307"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745307"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgcgt gggcagcact taggctaaaa ttggaatggt atggagaaat tagtgtggct
       61 cctgcacgag ggtgacacac aaacttataa agcattctat actttt
//
LOCUS       XR_004347378             164 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745310),
            ncRNA.
ACCESSION   XR_004347378
VERSION     XR_004347378.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..164
                     /gene="LOC116745310"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745310"
     ncRNA           1..164
                     /ncRNA_class="snRNA"
                     /gene="LOC116745310"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745310"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 atacttacct ggcgggggag ataccatgat catgaaggtg attttcccag ggcgtggctt
       61 atccattgca ctccggatgt gctgacctct ttgatttccc caaatgtggg aaacttgact
      121 gcataatttg aggtagtggg ggactgcatt tgcgctttcc cctg
//
LOCUS       XR_004347379             102 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745316),
            ncRNA.
ACCESSION   XR_004347379
VERSION     XR_004347379.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..102
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..102
                     /gene="LOC116745316"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745316"
     ncRNA           1..102
                     /ncRNA_class="snRNA"
                     /gene="LOC116745316"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745316"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgttccctt cagcagcaca tatactaaaa ctggaacaac acagagatta gcatggccct
       61 atgcaaatat gaccccaaaa tcatgaagtg tcacattttt tc
//
LOCUS       XR_004347381             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745320),
            ncRNA.
ACCESSION   XR_004347381
VERSION     XR_004347381.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116745320"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745320"
     ncRNA           1..104
                     /ncRNA_class="snRNA"
                     /gene="LOC116745320"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745320"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gccactttgg tatctcagac actaaaactg gaatgattca gagaaaataa gtatggccct
       61 tacacaagga agacatgcaa agtcataaag caatctgtac attt
//
LOCUS       XR_004347387             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745326),
            ncRNA.
ACCESSION   XR_004347387
VERSION     XR_004347387.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116745326"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745326"
     ncRNA           1..104
                     /ncRNA_class="snRNA"
                     /gene="LOC116745326"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745326"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 ttctactcct gtggcacata taacaacact aaaatattac aaagaagatt agtatagccc
       61 ctgtgcaaag atgatttaca catttgtaaa gttgccatat tttt
//
LOCUS       XR_004347388             102 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745331),
            ncRNA.
ACCESSION   XR_004347388
VERSION     XR_004347388.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..102
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..102
                     /gene="LOC116745331"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745331"
     ncRNA           1..102
                     /ncRNA_class="snRNA"
                     /gene="LOC116745331"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745331"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt cagcagcacc tatactaaaa ctggaacaat acagagaagc ttagcaaggc
       61 cccatgcaag tttttagtta tactgtgtaa aacttaattc tt
//
LOCUS       XR_004347390             103 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745333),
            ncRNA.
ACCESSION   XR_004347390
VERSION     XR_004347390.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..103
                     /gene="LOC116745333"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745333"
     ncRNA           1..103
                     /ncRNA_class="snRNA"
                     /gene="LOC116745333"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745333"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gctcacttca acagcacata gaaaaattga gaaggataca gagatgatta gcatgggctt
       61 tgcaggaaat gatgtgcaca tttgtaaagc attttgtatt ttt
//
LOCUS       XR_004347391             105 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745334),
            ncRNA.
ACCESSION   XR_004347391
VERSION     XR_004347391.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..105
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..105
                     /gene="LOC116745334"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745334"
     ncRNA           1..105
                     /ncRNA_class="snRNA"
                     /gene="LOC116745334"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745334"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 ctcacttagg catcagatct accagaactg gaaccatgca gagaagataa gcatggtccc
       61 tgtgcaaaga tgacagagtt ccacaaagcc aagaaaataa ccaag
//
LOCUS       XR_004347392             204 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA73 family
            (LOC116745338), ncRNA.
ACCESSION   XR_004347392
VERSION     XR_004347392.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..204
                     /gene="LOC116745338"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745338"
     ncRNA           1..204
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745338"
                     /product="small nucleolar RNA SNORA73 family"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00045"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745338"
                     /db_xref="RFAM:RF00045"
ORIGIN      
        1 ccaacgtgga taccccggga ggtcactctc cccgggccct gtcctggtgg cgtaggggag
       61 catagggctc tgccccatga tgtacagtcc ctttccacaa cgttggagat gaagccgggc
      121 cttgagtctg cgcctgcata ttcctacagc ttctcagagt cctgtggaca atgactgagg
      181 agacaaacca tgcaggaaac agct
//
LOCUS       XR_004347393             206 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA73 family
            (LOC116745341), ncRNA.
ACCESSION   XR_004347393
VERSION     XR_004347393.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..206
                     /gene="LOC116745341"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745341"
     ncRNA           1..206
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745341"
                     /product="small nucleolar RNA SNORA73 family"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00045"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745341"
                     /db_xref="RFAM:RF00045"
ORIGIN      
        1 ccaacgtgga taccccggga ggtcacttct ccccgggctc tgtcctggtg gcgtagggga
       61 gcatagggct ctgccccatg atgtacagtc cctttccaca acgttggaga tgaagccggg
      121 ccttgagtct gcgcctgcat attcctacag cttctcagag tcctgtggac aatgactgag
      181 gagacaaacc atgcagagag acatct
//
LOCUS       XR_004347394              62 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U7 small nuclear RNA (LOC116745343),
            ncRNA.
ACCESSION   XR_004347394
VERSION     XR_004347394.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..62
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..62
                     /gene="LOC116745343"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745343"
     ncRNA           1..62
                     /ncRNA_class="snRNA"
                     /gene="LOC116745343"
                     /product="U7 small nuclear RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00066"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745343"
                     /db_xref="RFAM:RF00066"
ORIGIN      
        1 aattgttacg gctcttgtag aatttgtcta gcaggttttc tggttcccac cagaaaactt
       61 cc
//
LOCUS       XR_004347395              96 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD21
            (LOC116745347), ncRNA.
ACCESSION   XR_004347395
VERSION     XR_004347395.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..96
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..96
                     /gene="LOC116745347"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745347"
     ncRNA           1..96
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745347"
                     /product="small nucleolar RNA SNORD21"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00068"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745347"
                     /db_xref="RFAM:RF00068"
ORIGIN      
        1 gctgaatgat gatgtcccac taactgagca gtcagtagtt ggtcctttgg ttgcatatga
       61 tgcaattaat tgtttcaaga cgggactgat ggcagc
//
LOCUS       XR_004347399             165 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745351),
            ncRNA.
ACCESSION   XR_004347399
VERSION     XR_004347399.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..165
                     /gene="LOC116745351"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745351"
     ncRNA           1..165
                     /ncRNA_class="snRNA"
                     /gene="LOC116745351"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745351"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 atacttactt ggcagagggc gtaccatgat cacgaaggtg gttttcccag ggttgaggct
       61 tatttattgc acttcggatt tgctgaccct tgcgatttcc ccgaatgtgg gaaactcgac
      121 tgtaaaattt gtgatagtgg gggactgcgt tcgcgctttc ccctg
//
LOCUS       XR_004347400              82 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD24
            (LOC116745354), ncRNA.
ACCESSION   XR_004347400
VERSION     XR_004347400.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..82
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..82
                     /gene="LOC116745354"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745354"
     ncRNA           1..82
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745354"
                     /product="small nucleolar RNA SNORD24"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00069"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745354"
                     /db_xref="RFAM:RF00069"
ORIGIN      
        1 tgccacaatg atgacagttt atttgctact cttgactgtg agggtgacga gaattattac
       61 caccattatg ctaactgagg ca
//
LOCUS       XR_004347402             145 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA62/SNORA6 family
            (LOC116745357), ncRNA.
ACCESSION   XR_004347402
VERSION     XR_004347402.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..145
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..145
                     /gene="LOC116745357"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745357"
     ncRNA           1..145
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745357"
                     /product="small nucleolar RNA SNORA62/SNORA6 family"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00091"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745357"
                     /db_xref="RFAM:RF00091"
ORIGIN      
        1 ttagcgtatc aaaaattcag gctatcaaaa gtaggctgga ctcacaagtg taggtagtgt
       61 gctacgtgag gggcaagttt tttgctaaca tcacaagggt ctttggccca atgagtgggg
      121 tttgatagta atacttgcta caaat
//
LOCUS       XR_004347405             127 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD22
            (LOC116745361), ncRNA.
ACCESSION   XR_004347405
VERSION     XR_004347405.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..127
                     /gene="LOC116745361"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745361"
     ncRNA           1..127
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745361"
                     /product="small nucleolar RNA SNORD22"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00099"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745361"
                     /db_xref="RFAM:RF00099"
ORIGIN      
        1 tgccaatgag gaaagcaagc atcctgtctt acccctgttc tagccccaga gcctgtaatg
       61 gtgagcccac tggagctaac tgggagacag gatgagaact tgttccataa ggaactgtct
      121 aagatac
//
LOCUS       XR_004347406             127 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD22
            (LOC116745364), ncRNA.
ACCESSION   XR_004347406
VERSION     XR_004347406.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..127
                     /gene="LOC116745364"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745364"
     ncRNA           1..127
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745364"
                     /product="small nucleolar RNA SNORD22"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00099"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745364"
                     /db_xref="RFAM:RF00099"
ORIGIN      
        1 agccaacgag gaaagcaagc atcctgtctt acctctgttc tagccccaga gccagtaatg
       61 gtgaatccac tggggccaac tgggagagag gatgaaagct tgttctataa ggagctgtct
      121 gaggtac
//
LOCUS       XR_004347408              78 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD81
            (LOC116745370), ncRNA.
ACCESSION   XR_004347408
VERSION     XR_004347408.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..78
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..78
                     /gene="LOC116745370"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745370"
     ncRNA           1..78
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745370"
                     /product="small nucleolar RNA SNORD81"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00136"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745370"
                     /db_xref="RFAM:RF00136"
ORIGIN      
        1 cagaatacat gatgatctca ccccaacttg aactctctca ctgattgctt gatgatgttc
       61 aaagatctga taattctg
//
LOCUS       XR_004347410              84 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD79
            (LOC116745373), ncRNA.
ACCESSION   XR_004347410
VERSION     XR_004347410.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..84
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..84
                     /gene="LOC116745373"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745373"
     ncRNA           1..84
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745373"
                     /product="small nucleolar RNA SNORD79"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00152"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745373"
                     /db_xref="RFAM:RF00152"
ORIGIN      
        1 tgctgttagt gatgattttt taaaaattaa acagatggga atctctctga caaagaatga
       61 agatttttaa atactgaaac ggta
//
LOCUS       XR_004347411              83 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD79
            (LOC116745375), ncRNA.
ACCESSION   XR_004347411
VERSION     XR_004347411.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..83
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..83
                     /gene="LOC116745375"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745375"
     ncRNA           1..83
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745375"
                     /product="small nucleolar RNA SNORD79"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00152"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745375"
                     /db_xref="RFAM:RF00152"
ORIGIN      
        1 tacgggtagt gatgattttt ttaaatgaag cagatgggaa tctctctgaa aaagactgaa
       61 gattttaaaa aactgaaaca gtg
//
LOCUS       XR_004347412             133 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA66
            (LOC116745377), ncRNA.
ACCESSION   XR_004347412
VERSION     XR_004347412.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..133
                     /gene="LOC116745377"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745377"
     ncRNA           1..133
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745377"
                     /product="small nucleolar RNA SNORA66"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00155"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745377"
                     /db_xref="RFAM:RF00155"
ORIGIN      
        1 gtgcaaactc gatcactagc tctgcatgat gttgcagagg tgaggggaac caggtttgct
       61 aaagtaattg tggtgataga aatgtattag ccttggatgc taccgaggtg gcccattctg
      121 tcccagtaca ttg
//
LOCUS       XR_004347414             139 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA70
            (LOC116745379), ncRNA.
ACCESSION   XR_004347414
VERSION     XR_004347414.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..139
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..139
                     /gene="LOC116745379"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745379"
     ncRNA           1..139
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745379"
                     /product="small nucleolar RNA SNORA70"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00156"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745379"
                     /db_xref="RFAM:RF00156"
ORIGIN      
        1 ttgcagccaa ttcagcctac cgtgctcttt tccccgtggg ggcctggtgt gcaatggctg
       61 caaacagcag cctcctaggt agggtagtgt atgagcctgt tgcctgtatg ggttgcccta
      121 agggaccttg gcagcagcc
//
LOCUS       XR_004347415             131 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA70
            (LOC116745386), ncRNA.
ACCESSION   XR_004347415
VERSION     XR_004347415.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..131
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..131
                     /gene="LOC116745386"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745386"
     ncRNA           1..131
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745386"
                     /product="small nucleolar RNA SNORA70"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00156"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745386"
                     /db_xref="RFAM:RF00156"
ORIGIN      
        1 aagaaaagaa tgaaattctg ctttcttccc cttgggggcc cagtgtgcaa cggctgcaaa
       61 tagcagcctc ctcagtagtg tacacagcct gttgcctgta cgggttgccc tcagggacct
      121 tggagacagc c
//
LOCUS       XR_004347416             166 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745393),
            ncRNA.
ACCESSION   XR_004347416
VERSION     XR_004347416.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..166
                     /gene="LOC116745393"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745393"
     ncRNA           1..166
                     /ncRNA_class="snRNA"
                     /gene="LOC116745393"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745393"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 atacttactt ggcagaggga cgtaccatga tcacgaaggt ggttttccca gggttgaggc
       61 ttatttattg cacttcggat ttgctgaccc ttgcgatttc cccgaatgtg ggaaactcga
      121 ctgtaaaatt tgtgatagtg ggggactgcg ttcgcgcttt cccctg
//
LOCUS       XR_004347419              80 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD55/SNORD39
            (LOC116745406), ncRNA.
ACCESSION   XR_004347419
VERSION     XR_004347419.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..80
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..80
                     /gene="LOC116745406"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745406"
     ncRNA           1..80
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745406"
                     /product="small nucleolar RNA SNORD55/SNORD39"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00157"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745406"
                     /db_xref="RFAM:RF00157"
ORIGIN      
        1 cgcgcgtgat gacaacttgg aaatgctgtg acctcccgac tgcgctatgg aggagccaac
       61 cttggagagc tgagcgtgcg
//
LOCUS       XR_004347420              86 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD103/SNORD85
            (LOC116745410), ncRNA.
ACCESSION   XR_004347420
VERSION     XR_004347420.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..86
                     /gene="LOC116745410"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745410"
     ncRNA           1..86
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745410"
                     /product="small nucleolar RNA SNORD103/SNORD85"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00188"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745410"
                     /db_xref="RFAM:RF00188"
ORIGIN      
        1 tctggcaatg atgagccact tgccctctct gagaacaaag ttcagtaatg agaatctttt
       61 gttatggact caagttctga gccaga
//
LOCUS       XR_004347421              86 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD103/SNORD85
            (LOC116745414), ncRNA.
ACCESSION   XR_004347421
VERSION     XR_004347421.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..86
                     /gene="LOC116745414"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745414"
     ncRNA           1..86
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745414"
                     /product="small nucleolar RNA SNORD103/SNORD85"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00188"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745414"
                     /db_xref="RFAM:RF00188"
ORIGIN      
        1 tctggcaatg atgagccact tgccctctct gagaacaaag ttcagtaatg agaatctttt
       61 gttatggact caagttctga gccaga
//
LOCUS       XR_004347422              77 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD103/SNORD85
            (LOC116745417), ncRNA.
ACCESSION   XR_004347422
VERSION     XR_004347422.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..77
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..77
                     /gene="LOC116745417"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745417"
     ncRNA           1..77
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745417"
                     /product="small nucleolar RNA SNORD103/SNORD85"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00188"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745417"
                     /db_xref="RFAM:RF00188"
ORIGIN      
        1 actggcgagg atgacataca cttgccctca cttagaccat agttcgttga tgagagcgcc
       61 tagtgttctg agccagt
//
LOCUS       XR_004347423              83 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD103/SNORD85
            (LOC116745419), ncRNA.
ACCESSION   XR_004347423
VERSION     XR_004347423.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..83
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..83
                     /gene="LOC116745419"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745419"
     ncRNA           1..83
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745419"
                     /product="small nucleolar RNA SNORD103/SNORD85"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00188"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745419"
                     /db_xref="RFAM:RF00188"
ORIGIN      
        1 tcttagggat gacacacttg tcctcactga gatcatagtt tggtgatgag aatcttgctt
       61 ttgtacttat cagctgagcc aga
//
LOCUS       XR_004347426             135 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA16B/SNORA16A
            family (LOC116745425), ncRNA.
ACCESSION   XR_004347426
VERSION     XR_004347426.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..135
                     /gene="LOC116745425"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745425"
     ncRNA           1..135
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745425"
                     /product="small nucleolar RNA SNORA16B/SNORA16A family"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00190"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745425"
                     /db_xref="RFAM:RF00190"
ORIGIN      
        1 tgtggccctt gtcgaagctg cagctgcttc cacatagctg ctgtggtcaa aaaggagccc
       61 agagtgacag ttttccttga cggtcgctgt tctgtttgct gtaactgatc tgcaacattt
      121 caggaaaaga cagct
//
LOCUS       XR_004347428              86 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD35
            (LOC116745430), ncRNA.
ACCESSION   XR_004347428
VERSION     XR_004347428.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..86
                     /gene="LOC116745430"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745430"
     ncRNA           1..86
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745430"
                     /product="small nucleolar RNA SNORD35"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00211"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745430"
                     /db_xref="RFAM:RF00211"
ORIGIN      
        1 agcagatgat ggctttctct cacaatggtc tgcgatgcca ttgtgggcag tgccaataat
       61 gccaatggct cagctgatgc cagaag
//
LOCUS       XR_004347429              69 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD38
            (LOC116745435), ncRNA.
ACCESSION   XR_004347429
VERSION     XR_004347429.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..69
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..69
                     /gene="LOC116745435"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745435"
     ncRNA           1..69
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745435"
                     /product="small nucleolar RNA SNORD38"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00212"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745435"
                     /db_xref="RFAM:RF00212"
ORIGIN      
        1 tctcagtgat gaaaactttg tccagttctg ctactgactt taagtgatga taaagtatat
       61 ctgaggaga
//
LOCUS       XR_004347430              68 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD38
            (LOC116745440), ncRNA.
ACCESSION   XR_004347430
VERSION     XR_004347430.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..68
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..68
                     /gene="LOC116745440"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745440"
     ncRNA           1..68
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745440"
                     /product="small nucleolar RNA SNORD38"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00212"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745440"
                     /db_xref="RFAM:RF00212"
ORIGIN      
        1 tcttgtgatg aaaactctgt ccagttctgc tactgaaggg agagatgaaa gcctttagtg
       61 ctgaggaa
//
LOCUS       XR_004347431             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD46
            (LOC116745444), ncRNA.
ACCESSION   XR_004347431
VERSION     XR_004347431.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116745444"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745444"
     ncRNA           1..104
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745444"
                     /product="small nucleolar RNA SNORD46"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00218"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745444"
                     /db_xref="RFAM:RF00218"
ORIGIN      
        1 aactagggtg atgaagaagt atccttaggc gtggttgtgg ccgtcttggt cacctgtgtg
       61 ccacttgcca atgctaggac ttgtcatagt tacactgact gtta
//
LOCUS       XR_004347432              72 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD45
            (LOC116745448), ncRNA.
ACCESSION   XR_004347432
VERSION     XR_004347432.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..72
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..72
                     /gene="LOC116745448"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745448"
     ncRNA           1..72
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745448"
                     /product="small nucleolar RNA SNORD45"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00279"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745448"
                     /db_xref="RFAM:RF00279"
ORIGIN      
        1 ggtcaatgat gtgatggcat gtattagcag aatccaaagt tgatgtaaat tctaaaatta
       61 cactgagacc tt
//
LOCUS       XR_004347433              79 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD45
            (LOC116745454), ncRNA.
ACCESSION   XR_004347433
VERSION     XR_004347433.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..79
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..79
                     /gene="LOC116745454"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745454"
     ncRNA           1..79
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745454"
                     /product="small nucleolar RNA SNORD45"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00279"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745454"
                     /db_xref="RFAM:RF00279"
ORIGIN      
        1 ggtcgatgat gagctggcat gtattctgaa tctaaagttg attattactg ctttagctct
       61 agaattaccc tgagacctg
//
LOCUS       XR_004347434              83 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD45
            (LOC116745460), ncRNA.
ACCESSION   XR_004347434
VERSION     XR_004347434.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..83
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..83
                     /gene="LOC116745460"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745460"
     ncRNA           1..83
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745460"
                     /product="small nucleolar RNA SNORD45"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00279"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745460"
                     /db_xref="RFAM:RF00279"
ORIGIN      
        1 ggtcaatgat gtgttggcat gtattacctg agtttacggt gatgtgggat aacacttaag
       61 ctctagaatt acgctgagac ctt
//
LOCUS       XR_004347435              76 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD47
            (LOC116745465), ncRNA.
ACCESSION   XR_004347435
VERSION     XR_004347435.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..76
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..76
                     /gene="LOC116745465"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745465"
     ncRNA           1..76
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745465"
                     /product="small nucleolar RNA SNORD47"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00281"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745465"
                     /db_xref="RFAM:RF00281"
ORIGIN      
        1 aaccagtgat gtgatgattc tgccaaatga atagaatgat atcactgtaa aaccgttcca
       61 ttttgattct gaggtt
//
LOCUS       XR_004347436              80 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD74
            (LOC116745472), ncRNA.
ACCESSION   XR_004347436
VERSION     XR_004347436.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..80
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..80
                     /gene="LOC116745472"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745472"
     ncRNA           1..80
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745472"
                     /product="small nucleolar RNA SNORD74"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00284"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745472"
                     /db_xref="RFAM:RF00284"
ORIGIN      
        1 gggctctgcc tctgatgaag cctgtgttgg tagggacatc tgagactgtt gatgaatgcc
       61 aacggctctg atggcggcgc
//
LOCUS       XR_004347437              62 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD44
            (LOC116745479), ncRNA.
ACCESSION   XR_004347437
VERSION     XR_004347437.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..62
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..62
                     /gene="LOC116745479"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745479"
     ncRNA           1..62
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745479"
                     /product="small nucleolar RNA SNORD44"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00287"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745479"
                     /db_xref="RFAM:RF00287"
ORIGIN      
        1 cctgtgtgat gataaagcaa atactgactg aacatgaagg tcttaattag ctctatctga
       61 tt
//
LOCUS       XR_004347439              81 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA
            snR60/Z15/Z230/Z193/J17 (LOC116745483), ncRNA.
ACCESSION   XR_004347439
VERSION     XR_004347439.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..81
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..81
                     /gene="LOC116745483"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745483"
     ncRNA           1..81
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745483"
                     /product="small nucleolar RNA snR60/Z15/Z230/Z193/J17"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00309"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745483"
                     /db_xref="RFAM:RF00309"
ORIGIN      
        1 ccgatacaat gatgataaca tagttcagca gactaacagt gatgagcaaa tactgtcttt
       61 cgctcctatc tgatgtatct g
//
LOCUS       XR_004347441             132 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA36 family
            (LOC116745488), ncRNA.
ACCESSION   XR_004347441
VERSION     XR_004347441.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..132
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..132
                     /gene="LOC116745488"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745488"
     ncRNA           1..132
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745488"
                     /product="small nucleolar RNA SNORA36 family"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00340"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745488"
                     /db_xref="RFAM:RF00340"
ORIGIN      
        1 ttccaaagtg ttgagttcag ttcagggtga cttccttgtt ctgttaatta aactttggaa
       61 cattgagaca ggctaggaga aatgattgga tagaaaatat tattctattc atttatctcc
      121 cagcctacaa aa
//
LOCUS       XR_004347442             127 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA8
            (LOC116745495), ncRNA.
ACCESSION   XR_004347442
VERSION     XR_004347442.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..127
                     /gene="LOC116745495"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745495"
     ncRNA           1..127
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745495"
                     /product="small nucleolar RNA SNORA8"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00393"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745495"
                     /db_xref="RFAM:RF00393"
ORIGIN      
        1 tgtcattaaa tgctcctgga aaacatgatt tttgttcaaa ggacagggca atattaattc
       61 agtatctggc atcattggtt ttcttggctt tgtgcatgtt agacctggta tttctaccga
      121 tacagta
//
LOCUS       XR_004347443             164 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745503),
            ncRNA.
ACCESSION   XR_004347443
VERSION     XR_004347443.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..164
                     /gene="LOC116745503"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745503"
     ncRNA           1..164
                     /ncRNA_class="snRNA"
                     /gene="LOC116745503"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745503"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 atacttacct ggcagagaaa atattatgac ctcgaaggtg gttttctcag gttgaggctt
       61 atctgttgta cttcgaattt gttgacgcct cccatttccc caaatgtgag aaactcgact
      121 gcaaaatttg tgatagtggg ggattgcgtt cgcgccttcc cctg
//
LOCUS       XR_004347444             131 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA44
            (LOC116745505), ncRNA.
ACCESSION   XR_004347444
VERSION     XR_004347444.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..131
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..131
                     /gene="LOC116745505"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745505"
     ncRNA           1..131
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745505"
                     /product="small nucleolar RNA SNORA44"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00405"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745505"
                     /db_xref="RFAM:RF00405"
ORIGIN      
        1 cagcatgttc ccaagggcta tggcttgttg tggccatagg atctccaact gcatgcaaga
       61 gcaacgtgga gagactttga cagcacaggt cagcataata cctgcagctg ccactcgcct
      121 ttcctatagt a
//
LOCUS       XR_004347445             134 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA42/SNORA80
            family (LOC116745511), ncRNA.
ACCESSION   XR_004347445
VERSION     XR_004347445.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..134
                     /gene="LOC116745511"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745511"
     ncRNA           1..134
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745511"
                     /product="small nucleolar RNA SNORA42/SNORA80 family"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00406"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745511"
                     /db_xref="RFAM:RF00406"
ORIGIN      
        1 gcatggtgat ggatttatgg cgggtcctct gtgggcctct catagtgtac ccatgccaga
       61 gtaaattgca gcctcgaacc attgcccagc ctccttacca gtgggctgtg agcactgaag
      121 ggggttgtac agtg
//
LOCUS       XR_004347446             136 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA58
            (LOC116745515), ncRNA.
ACCESSION   XR_004347446
VERSION     XR_004347446.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..136
                     /gene="LOC116745515"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745515"
     ncRNA           1..136
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745515"
                     /product="small nucleolar RNA SNORA58"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00418"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745515"
                     /db_xref="RFAM:RF00418"
ORIGIN      
        1 gggcatactt gtagaccttg cctgactgtc cccatggcca ggcagggggg acagtgtatg
       61 caagagtaat atggagtttg tgccagttca agccagctta atcaatggct ggataaattg
      121 cagtactcca acattc
//
LOCUS       XR_004347447             127 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA61
            (LOC116745519), ncRNA.
ACCESSION   XR_004347447
VERSION     XR_004347447.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..127
                     /gene="LOC116745519"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745519"
     ncRNA           1..127
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745519"
                     /product="small nucleolar RNA SNORA61"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00420"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745519"
                     /db_xref="RFAM:RF00420"
ORIGIN      
        1 accctccggt tccctttccc atcagatctg aaccttggtc ttggtggtcg taagaggagg
       61 aatagtagta ctgaagctgt gctcatggtg tctgtttata tagcatgtgg gctagtttca
      121 aacaagg
//
LOCUS       XR_004347448             129 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small Cajal body-specific RNA 4
            (LOC116745526), ncRNA.
ACCESSION   XR_004347448
VERSION     XR_004347448.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..129
                     /gene="LOC116745526"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745526"
     ncRNA           1..129
                     /ncRNA_class="guide_RNA"
                     /gene="LOC116745526"
                     /product="small Cajal body-specific RNA 4"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00423"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745526"
                     /db_xref="RFAM:RF00423"
ORIGIN      
        1 actggaggac taagaaggct gagtctgatg aagcaagact ctgctgatac aatcctccta
       61 gaaaaaaggg ttggagagag cagcccttat tggagaacat cccagggctg actgtactac
      121 ccaacattt
//
LOCUS       XR_004347452             131 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA18
            (LOC116745531), ncRNA.
ACCESSION   XR_004347452
VERSION     XR_004347452.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..131
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..131
                     /gene="LOC116745531"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745531"
     ncRNA           1..131
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745531"
                     /product="small nucleolar RNA SNORA18"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00425"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745531"
                     /db_xref="RFAM:RF00425"
ORIGIN      
        1 gttgaggtct atcctgacgg ggctttttct gtaaacctac accattggaa atgcctcata
       61 gagtaatggt gtggtttcct ttactcatag aactacctgt tagatctgtg ggaaagaact
      121 acaagacaga g
//
LOCUS       XR_004347457             135 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA18
            (LOC116745537), ncRNA.
ACCESSION   XR_004347457
VERSION     XR_004347457.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..135
                     /gene="LOC116745537"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745537"
     ncRNA           1..135
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745537"
                     /product="small nucleolar RNA SNORA18"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00425"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745537"
                     /db_xref="RFAM:RF00425"
ORIGIN      
        1 gttgaggtct atcccgatgg agctttttct gtaaacctac agcattggaa acacctcata
       61 gagtaactat gtggtttcct ttactcatag aactacctgt tatatctgtg ggaaagaact
      121 aactataaga cagag
//
LOCUS       XR_004347462             135 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA18
            (LOC116745540), ncRNA.
ACCESSION   XR_004347462
VERSION     XR_004347462.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..135
                     /gene="LOC116745540"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745540"
     ncRNA           1..135
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745540"
                     /product="small nucleolar RNA SNORA18"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00425"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745540"
                     /db_xref="RFAM:RF00425"
ORIGIN      
        1 gagaaggtca gatgatccca accgctttca aaatcaagca caaaatcgtt ggaaacgcct
       61 catagattaa ctgtgtggtt tcctttactt atagaactac ttgttagatc tgtgggaaag
      121 aactacaaga cagag
//
LOCUS       XR_004347463             135 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA55
            (LOC116745543), ncRNA.
ACCESSION   XR_004347463
VERSION     XR_004347463.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..135
                     /gene="LOC116745543"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745543"
     ncRNA           1..135
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745543"
                     /product="small nucleolar RNA SNORA55"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00431"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745543"
                     /db_xref="RFAM:RF00431"
ORIGIN      
        1 gcacctgaat ctttcccatt ctttgctgct ttgtgctggt gtggggacag atggtgccac
       61 agcatgagca ggggaaatcc agacgggttg tctttcactt gtcttgaggc ctgtctctac
      121 aactctgcca cactt
//
LOCUS       XR_004347464             134 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U11 spliceosomal RNA (LOC116745549),
            ncRNA.
ACCESSION   XR_004347464
VERSION     XR_004347464.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..134
                     /gene="LOC116745549"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745549"
     ncRNA           1..134
                     /ncRNA_class="snRNA"
                     /gene="LOC116745549"
                     /product="U11 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00548"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745549"
                     /db_xref="RFAM:RF00548"
ORIGIN      
        1 aaaaagggct tctgtcgtga gtgacacacg tggggcagct cgtttgttct tcgtgcggaa
       61 tcgacatcaa gagatttcgg aagcataatt ttttgaaaac tgggcagcta gtgatcgttg
      121 gtcctggcgc ccct
//
LOCUS       XR_004347465             166 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small Cajal body-specific RNA 1
            (LOC116745552), ncRNA.
ACCESSION   XR_004347465
VERSION     XR_004347465.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..166
                     /gene="LOC116745552"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745552"
     ncRNA           1..166
                     /ncRNA_class="guide_RNA"
                     /gene="LOC116745552"
                     /product="small Cajal body-specific RNA 1"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00553"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745552"
                     /db_xref="RFAM:RF00553"
ORIGIN      
        1 cagcacttga tactaaccga gctatctgtg tcctagcctt atgtcagagg cttgtgatgt
       61 gttgtgatag ctgggtttaa gaagtgcaat attaaaacaa aagccatgag tcttttaagc
      121 ccagtgtgta aagatacact ctgagttata actcagaggc acaact
//
LOCUS       XR_004347466             126 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA40
            (LOC116745553), ncRNA.
ACCESSION   XR_004347466
VERSION     XR_004347466.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..126
                     /gene="LOC116745553"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745553"
     ncRNA           1..126
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745553"
                     /product="small nucleolar RNA SNORA40"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00561"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745553"
                     /db_xref="RFAM:RF00561"
ORIGIN      
        1 agtacttatg tttgtttttg ttaatctgta gacaaagact tatagatggg tgcaaaaata
       61 aatcctcttt tgcaacatag aactcattgt tcagtatgaa ttttgataga gataagaagg
      121 aacatg
//
LOCUS       XR_004347467              63 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA40
            (LOC116745557), ncRNA.
ACCESSION   XR_004347467
VERSION     XR_004347467.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..63
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..63
                     /gene="LOC116745557"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745557"
     ncRNA           1..63
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745557"
                     /product="small nucleolar RNA SNORA40"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00561"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745557"
                     /db_xref="RFAM:RF00561"
ORIGIN      
        1 aatcctcttt tacaacccag agctcattgt tcagtatgag ttttgataca ggtaagaagg
       61 aac
//
LOCUS       XR_004347468             128 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA49
            (LOC116745561), ncRNA.
ACCESSION   XR_004347468
VERSION     XR_004347468.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..128
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..128
                     /gene="LOC116745561"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745561"
     ncRNA           1..128
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745561"
                     /product="small nucleolar RNA SNORA49"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00562"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745561"
                     /db_xref="RFAM:RF00562"
ORIGIN      
        1 ctccctcagc cttactccag ggactttcgc tgtaaagtgc ctggcattgc tggagagtac
       61 atgaacgagt acgcatcctt ccccagggag actgctgtcc tgtgggacct acacgtggag
      121 ctgacagc
//
LOCUS       XR_004347474             141 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small Cajal body-specific RNA 3
            (LOC116745568), ncRNA.
ACCESSION   XR_004347474
VERSION     XR_004347474.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..141
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..141
                     /gene="LOC116745568"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745568"
     ncRNA           1..141
                     /ncRNA_class="guide_RNA"
                     /gene="LOC116745568"
                     /product="small Cajal body-specific RNA 3"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00565"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745568"
                     /db_xref="RFAM:RF00565"
ORIGIN      
        1 aatggaacct gcaggaacca accatgtgga caaatgaaaa aatgcctttt gtctacaaat
       61 tgcagtgatc ctacattaac atggaggtct ctgtctggct taggacagct ggctaagtct
      121 gatcgttccc ctccatacag c
//
LOCUS       XR_004347478              83 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar SNORD12/SNORD106
            (LOC116745570), ncRNA.
ACCESSION   XR_004347478
VERSION     XR_004347478.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..83
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..83
                     /gene="LOC116745570"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745570"
     ncRNA           1..83
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745570"
                     /product="small nucleolar SNORD12/SNORD106"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00581"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745570"
                     /db_xref="RFAM:RF00581"
ORIGIN      
        1 ttcctcataa atgatgactg aacttttttc cccgacagat caaccatgtt gatctaactt
       61 ctctaagcca gttataagac aaa
//
LOCUS       XR_004347487              96 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA12
            (LOC116745574), ncRNA.
ACCESSION   XR_004347487
VERSION     XR_004347487.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..96
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..96
                     /gene="LOC116745574"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745574"
     ncRNA           1..96
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745574"
                     /product="small nucleolar RNA SNORA12"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00586"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745574"
                     /db_xref="RFAM:RF00586"
ORIGIN      
        1 agttttcaag agggtgtccg taggaactgg cagaggcttg atgacaaaga gatctctttc
       61 tagcctttcc tgcatcagag atgggctccc acatgt
//
LOCUS       XR_004347488              70 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD77
            (LOC116745580), ncRNA.
ACCESSION   XR_004347488
VERSION     XR_004347488.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..70
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..70
                     /gene="LOC116745580"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745580"
     ncRNA           1..70
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745580"
                     /product="small nucleolar RNA SNORD77"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00591"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745580"
                     /db_xref="RFAM:RF00591"
ORIGIN      
        1 acactatgat ggttgcgtag ttcaacagac tgaatcatga aaaagataat accatttgtc
       61 tgatgtatct
//
LOCUS       XR_004347489              72 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD77
            (LOC116745584), ncRNA.
ACCESSION   XR_004347489
VERSION     XR_004347489.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..72
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..72
                     /gene="LOC116745584"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745584"
     ncRNA           1..72
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745584"
                     /product="small nucleolar RNA SNORD77"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00591"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745584"
                     /db_xref="RFAM:RF00591"
ORIGIN      
        1 ttactatgat ggctgcatag ttcaacagat gattgaatct tgaaagagat ataccattta
       61 tctgatgtag aa
//
LOCUS       XR_004347490             162 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U1 spliceosomal RNA (LOC116745586),
            ncRNA.
ACCESSION   XR_004347490
VERSION     XR_004347490.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..162
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..162
                     /gene="LOC116745586"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745586"
     ncRNA           1..162
                     /ncRNA_class="snRNA"
                     /gene="LOC116745586"
                     /product="U1 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00003"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745586"
                     /db_xref="RFAM:RF00003"
ORIGIN      
        1 ctagttacct ggcaggaaag atgccatgat catgatggtg gctttcccag cgcgacgctt
       61 gtccattgca ctcaggtagt gctgacttta gagatttccc caaatgtggg aaacttgacc
      121 tcggaatttg tgctagtagg ggtatgtatt tgcgctctcc gc
//
LOCUS       XR_004347493              65 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD78
            (LOC116745590), ncRNA.
ACCESSION   XR_004347493
VERSION     XR_004347493.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..65
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..65
                     /gene="LOC116745590"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745590"
     ncRNA           1..65
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745590"
                     /product="small nucleolar RNA SNORD78"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00592"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745590"
                     /db_xref="RFAM:RF00592"
ORIGIN      
        1 ttgtaatgat gttgagcaaa tgtctgacct gaaatgagca tgtagacaaa tctaacactg
       61 aagaa
//
LOCUS       XR_004347494              86 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD86
            (LOC116745595), ncRNA.
ACCESSION   XR_004347494
VERSION     XR_004347494.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..86
                     /gene="LOC116745595"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745595"
     ncRNA           1..86
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745595"
                     /product="small nucleolar RNA SNORD86"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00594"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745595"
                     /db_xref="RFAM:RF00594"
ORIGIN      
        1 gatcacggtg atggttgacc agggctccct gacctgtaca ggcctctgct atgggggtga
       61 tggccagtcc tggtgtctga gtgatt
//
LOCUS       XR_004347495              74 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD99
            (LOC116745599), ncRNA.
ACCESSION   XR_004347495
VERSION     XR_004347495.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..74
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..74
                     /gene="LOC116745599"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745599"
     ncRNA           1..74
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745599"
                     /product="small nucleolar RNA SNORD99"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00608"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745599"
                     /db_xref="RFAM:RF00608"
ORIGIN      
        1 actggtccag gatgaaacct aatctgagtg gacatctttg gatgataaat gcggatatgg
       61 gactgagacc agcc
//
LOCUS       XR_004347499              62 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD75
            (LOC116745602), ncRNA.
ACCESSION   XR_004347499
VERSION     XR_004347499.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..62
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..62
                     /gene="LOC116745602"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745602"
     ncRNA           1..62
                     /ncRNA_class="snoRNA"
                     /gene="LOC116745602"
                     /product="small nucleolar RNA SNORD75"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00612"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745602"
                     /db_xref="RFAM:RF00612"
ORIGIN      
        1 agcctgtgat gttttaagag tagtgggcag aagggatttc tgaaaaattc tattctgagg
       61 ct
//
LOCUS       XR_004347501             421 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small Cajal body-specific RNA 2
            (LOC116745616), ncRNA.
ACCESSION   XR_004347501
VERSION     XR_004347501.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..421
                     /gene="LOC116745616"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745616"
     ncRNA           1..421
                     /ncRNA_class="guide_RNA"
                     /gene="LOC116745616"
                     /product="small Cajal body-specific RNA 2"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01268"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745616"
                     /db_xref="RFAM:RF01268"
ORIGIN      
        1 tttcaccgga gggagagcgg catggggtga ggctggttag aagtgtggcg aggtgtgtgg
       61 aaggcgcctg cgggctgagt gtgtgagtgg acgcgagaat gtgtgagtgc gcgcgtggtg
      121 cgtgcaaggc gagtgcgtgc ggccgccccc gtgcccttcc cccccgccta caccttgatc
      181 ttatttgatc gggttgtgac tccagccccg ccggaccaac ccgaaatgaa aagctcccct
      241 cctgcgaagc cccttcctcg gggcgctgtg cagcgaggcc ccttgggcgg tggcaacgcc
      301 gcggtcccgg aggtcccgga gctggtccta cgaggcccgg cgctcagaag tgatgaattg
      361 atcagataga cgaggctggg cttgtcctgg gccactgatt atcgaggcga ttctgatctg
      421 a
//
LOCUS       XR_004347508             139 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U4 spliceosomal RNA (LOC116745643),
            ncRNA.
ACCESSION   XR_004347508
VERSION     XR_004347508.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..139
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..139
                     /gene="LOC116745643"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745643"
     ncRNA           1..139
                     /ncRNA_class="snRNA"
                     /gene="LOC116745643"
                     /product="U4 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00015"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745643"
                     /db_xref="RFAM:RF00015"
ORIGIN      
        1 agctttgtgc agtggcagta tcgtagtcaa tgaggtttat cagacgcaca attattgcta
       61 attgaaagcc tcaacataat ctaaaaactt gaaattatcc agttatggtt tttgatgaga
      121 gtggaattta tctagaaat
//
LOCUS       XR_004347509             116 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U5 spliceosomal RNA (LOC116745646),
            ncRNA.
ACCESSION   XR_004347509
VERSION     XR_004347509.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..116
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..116
                     /gene="LOC116745646"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745646"
     ncRNA           1..116
                     /ncRNA_class="snRNA"
                     /gene="LOC116745646"
                     /product="U5 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00020"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745646"
                     /db_xref="RFAM:RF00020"
ORIGIN      
        1 acactctggt ttctcttcag aacgcataaa tctttcgcct tttactaaag atttccgtgg
       61 agagaaacaa ttccgagttt ctacccaatt ttttgaggcc ttgtttttac aaggtt
//
LOCUS       XR_004347510             116 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U5 spliceosomal RNA (LOC116745653),
            ncRNA.
ACCESSION   XR_004347510
VERSION     XR_004347510.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..116
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..116
                     /gene="LOC116745653"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745653"
     ncRNA           1..116
                     /ncRNA_class="snRNA"
                     /gene="LOC116745653"
                     /product="U5 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00020"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745653"
                     /db_xref="RFAM:RF00020"
ORIGIN      
        1 acactctggt ttctcttcag aacgcataaa tctttcgcct tttactaaag atttccgtgg
       61 agagaaacaa ttccgagttt ctacccaatt ttttgaggcc ttgtctttac aaggtt
//
LOCUS       XR_004347511             116 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U5 spliceosomal RNA (LOC116745658),
            ncRNA.
ACCESSION   XR_004347511
VERSION     XR_004347511.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..116
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..116
                     /gene="LOC116745658"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745658"
     ncRNA           1..116
                     /ncRNA_class="snRNA"
                     /gene="LOC116745658"
                     /product="U5 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00020"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745658"
                     /db_xref="RFAM:RF00020"
ORIGIN      
        1 atactctggt ttctcttcag atcgtataaa tctttcgcct tttactaaag atttccgtgg
       61 agaggaacaa ttctgagttt gtacccaatt ttttgaggtc ttgcgtttgc aaggcc
//
LOCUS       XR_004347512             116 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U5 spliceosomal RNA (LOC116745660),
            ncRNA.
ACCESSION   XR_004347512
VERSION     XR_004347512.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..116
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..116
                     /gene="LOC116745660"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745660"
     ncRNA           1..116
                     /ncRNA_class="snRNA"
                     /gene="LOC116745660"
                     /product="U5 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00020"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745660"
                     /db_xref="RFAM:RF00020"
ORIGIN      
        1 atagtctggt ttctcttcag atagaataaa tctttcgcct tttactaaag atttccgtga
       61 agagaactaa gtctgaatgt tccacaaact ttttgaggcc ttgctttggc agggct
//
LOCUS       XR_004347514             115 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U5 spliceosomal RNA (LOC116745667),
            ncRNA.
ACCESSION   XR_004347514
VERSION     XR_004347514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..115
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..115
                     /gene="LOC116745667"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745667"
     ncRNA           1..115
                     /ncRNA_class="snRNA"
                     /gene="LOC116745667"
                     /product="U5 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00020"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745667"
                     /db_xref="RFAM:RF00020"
ORIGIN      
        1 tactagtgtt tctcctcata atcgaatgaa tcttttatct tttactaaag attcacatgg
       61 ggaggaaaaa gcatgacagt tgcctcagtt ctttgaaggc ttgtgggaat aaaca
//
LOCUS       XR_004347515             111 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U5 spliceosomal RNA (LOC116745669),
            ncRNA.
ACCESSION   XR_004347515
VERSION     XR_004347515.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..111
                     /gene="LOC116745669"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745669"
     ncRNA           1..111
                     /ncRNA_class="snRNA"
                     /gene="LOC116745669"
                     /product="U5 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00020"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745669"
                     /db_xref="RFAM:RF00020"
ORIGIN      
        1 tattgcggtt tttcttcggc tcgtatagaa tttttgcctt ttactgaaga tttccatgga
       61 gggaaacagt tttgagagtt tattttttga ggttgcgtat tttagtgggg t
//
LOCUS       XR_004347516             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745672),
            ncRNA.
ACCESSION   XR_004347516
VERSION     XR_004347516.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745672"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745672"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745672"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745672"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgcgcaa ggatgacacg caaattcgtg aagcgttcca tattttt
//
LOCUS       XR_004347517             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745675),
            ncRNA.
ACCESSION   XR_004347517
VERSION     XR_004347517.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745675"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745675"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745675"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745675"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgcgcaa ggatgacacg caaatttgtg aagcattcca tattttt
//
LOCUS       XR_004347518             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745678),
            ncRNA.
ACCESSION   XR_004347518
VERSION     XR_004347518.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745678"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745678"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745678"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745678"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgcgcaa ggatgacacg caaattcgtg aagcgttcca tatttta
//
LOCUS       XR_004347519             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745681),
            ncRNA.
ACCESSION   XR_004347519
VERSION     XR_004347519.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745681"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745681"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745681"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745681"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctttctt cagcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgtgcaa ggatgacatg caaatacgtg aagtgttcca tattttt
//
LOCUS       XR_004347521             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745686),
            ncRNA.
ACCESSION   XR_004347521
VERSION     XR_004347521.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745686"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745686"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745686"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745686"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctctctt tggcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgctcaa ggatgacacg caaatttgta aagcattcca tattttt
//
LOCUS       XR_004347522             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745692),
            ncRNA.
ACCESSION   XR_004347522
VERSION     XR_004347522.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745692"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745692"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745692"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745692"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 atgctcgctt cagcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgcgcaa ggatgacact caaattcatg aagcgttcca tattttt
//
LOCUS       XR_004347526             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745698),
            ncRNA.
ACCESSION   XR_004347526
VERSION     XR_004347526.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745698"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745698"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745698"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745698"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tatactaaaa ttggaacaat acagagaaaa ttagcatggc
       61 ccctgtgcaa ggatgacacg caaattcgtg aagtgttcca tattttt
//
LOCUS       XR_004347527             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745699),
            ncRNA.
ACCESSION   XR_004347527
VERSION     XR_004347527.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745699"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745699"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745699"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745699"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tatactaaaa ttggaatgat aaagagaaga ttagcatggc
       61 ccctgcgcaa ggatgacacg cagattcgtg aagcgttcca tgttttt
//
LOCUS       XR_004347528             108 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745701),
            ncRNA.
ACCESSION   XR_004347528
VERSION     XR_004347528.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..108
                     /gene="LOC116745701"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745701"
     ncRNA           1..108
                     /ncRNA_class="snRNA"
                     /gene="LOC116745701"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745701"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt cggcagcaca tatactaaaa attggaacga tacagagaag attagcatgg
       61 cccctgcaca aggatgacac gcaaattcgt gaagcgttcc atatttta
//
LOCUS       XR_004347529             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745703),
            ncRNA.
ACCESSION   XR_004347529
VERSION     XR_004347529.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745703"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745703"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745703"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745703"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcggcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgtgcaa ggatgacatg caaatttgtg aagcgttcca tatttta
//
LOCUS       XR_004347530             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745706),
            ncRNA.
ACCESSION   XR_004347530
VERSION     XR_004347530.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745706"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745706"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745706"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745706"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcacg tatactaaaa ttggaacgat acagagaaga ttagcatggt
       61 ccctacacaa ggatgacaca caaatttgtg aagcgttcca tattttt
//
LOCUS       XR_004347531             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745712),
            ncRNA.
ACCESSION   XR_004347531
VERSION     XR_004347531.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745712"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745712"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745712"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745712"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctt tggcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 tcctgcgcaa gggtgacacg caaattcatg aagcattcca tattttt
//
LOCUS       XR_004347532             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745717),
            ncRNA.
ACCESSION   XR_004347532
VERSION     XR_004347532.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745717"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745717"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745717"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745717"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctccctt cggcagcaca tatactaaaa ttgtaacaat acagagcaga ttagcatggc
       61 ccctgcgtaa ggatgacaca caaatttgtg aagcgttcca tattttt
//
LOCUS       XR_004347533             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745721),
            ncRNA.
ACCESSION   XR_004347533
VERSION     XR_004347533.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745721"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745721"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745721"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745721"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttactt tgacagcata tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgcgtga ggatgacatg caaatttgtg aagcattcca tattttt
//
LOCUS       XR_004347538             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745726),
            ncRNA.
ACCESSION   XR_004347538
VERSION     XR_004347538.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745726"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745726"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745726"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt tggcagcata tatactaaag ttggaacggt acagagaaga ttagcatggc
       61 ccctgcacaa ggatgacatg taaattcgtg aagtgttcca aattttt
//
LOCUS       XR_004347539             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745729),
            ncRNA.
ACCESSION   XR_004347539
VERSION     XR_004347539.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745729"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745729"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745729"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745729"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 atgctccctt tggcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctacacaa ggatgacatg caaattcatg aagcattcca tattttt
//
LOCUS       XR_004347540             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745735),
            ncRNA.
ACCESSION   XR_004347540
VERSION     XR_004347540.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745735"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745735"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745735"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745735"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctt cggcagcaca tatactaaaa ttggaatggt acagagaaga ttagcatgac
       61 ccctgtgcaa ggatgacatg caaattcgtg aagcattcca tattttt
//
LOCUS       XR_004347543             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745738),
            ncRNA.
ACCESSION   XR_004347543
VERSION     XR_004347543.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745738"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745738"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745738"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745738"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctt cggcagcacg tatactaaaa ttggaacgac acagagaaga ttagcatggc
       61 ccctgcgcaa ggttgacgtg caaattcgtg aagcgttcca tattttt
//
LOCUS       XR_004347544             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116745744),
            ncRNA.
ACCESSION   XR_004347544
VERSION     XR_004347544.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045763.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116745744"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116745744"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116745744"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116745744"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cagcagcgca tatactaaaa ttggaaagat atagagaaga ttagcatggc
       61 ccctgcacaa ggatgacacg caaattcgtg aagcgttcca tcttctt
//
LOCUS       XM_032618121            1473 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 21 C4orf47 homolog
            (C21H4orf47), transcript variant X1, mRNA.
ACCESSION   XM_032618121
VERSION     XM_032618121.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1473
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1473
                     /gene="C21H4orf47"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746623"
     CDS             345..1277
                     /gene="C21H4orf47"
                     /codon_start=1
                     /product="UPF0602 protein C4orf47 homolog isoform X1"
                     /protein_id="XP_032474012.1"
                     /db_xref="GeneID:116746623"
                     /translation="MPVEGGKTDMERIGLFSEMEYVTVGDKYVSQFNRPFNEAASKNR
                     QMLPGGSKEMSSLQAGYFDPHFVRIFEGEGYVNLNQVRRRHMMEEAKKNLGKAFLPSN
                     GDKKPCGLGSYYGTIGRPVPFFSAQSKPKEKYEPPGKNLYTNPGKKGTGYGYANVTIG
                     KQFSHSADFYDAAKLNDKKENEEHHRLLKGTPFKLNLYPREYFDTNPYLFEKPLPPIK
                     KAEKKEALANPFKPSSPGKKAGGMKAGTFDSYPSHSADPYGVKLTSHISSKGAKVFHP
                     PGGPKSRPTESIMTLNVKRALNMKNYKTASVQSY"
     misc_feature    366..1226
                     /gene="C21H4orf47"
                     /note="Domain of unknown function (DUF4586); Region:
                     DUF4586; pfam15239"
                     /db_xref="CDD:464579"
ORIGIN      
        1 actgcgtcat tcgtttcccg cagacactct tacgtctttc ttgatgcgga ttcgaaccct
       61 ccacgtatcc ttccgtaggg ttagttcttg gaatggattc ttccgtagcc ggggtaacgc
      121 gccacaataa accttgcggc gagcggagcg tgcggagcgt gcggagcagc ctagtagcga
      181 cgtgcagggc gggaagcgct cttgcggggc tggctcgtgc ccttctcaga ggtgacttgg
      241 tcctcgcagg cgtcagtgta gagtaggatt ttgctataga agaagtagcc ctcagcgacc
      301 cattgaagtt acctgtatag agcacaccac cacaagaagc aaccatgcct gtggaaggag
      361 ggaaaacaga catggagagg attgggctct tcagtgagat ggaatatgtt actgttggtg
      421 ataaatatgt gtcacaattt aatcgaccat ttaatgaagc tgcaagcaaa aatagacaga
      481 tgctccctgg gggatccaaa gagatgtcaa gtctccaggc aggttatttt gatccccatt
      541 ttgtaaggat ttttgaaggt gaaggctacg taaacctgaa tcaagtgagg agacggcata
      601 tgatggaaga agccaaaaaa aatctaggca aagcgttcct tcctagtaat ggagataaga
      661 agccatgtgg attaggaagt tactatggaa cgataggtag accagtccca tttttcagtg
      721 cacaatcaaa acccaaagaa aaatatgagc cacctggaaa gaatttgtac acaaacccag
      781 gaaagaaagg aactggatat ggctatgcaa atgttaccat aggtaaacag ttttcacact
      841 ctgctgattt ctatgatgca gcaaaactaa atgacaagaa agagaatgaa gaacaccatc
      901 gtttacttaa agggacacct ttcaaattaa atctttaccc aagggaatat tttgatacca
      961 atccttattt gtttgagaaa cctttaccac caattaaaaa agcagagaag aaagaagcac
     1021 ttgcaaaccc ttttaagccc tcttctcctg gtaaaaaggc tggtggaatg aaggcaggaa
     1081 catttgattc ttacccttca cattctgctg acccttatgg ggttaaattg acaagccata
     1141 tttccagcaa aggtgctaag gttttccatc caccaggtgg accaaaaagc agaccaactg
     1201 aaagtataat gactttgaat gtcaaaaggg cactaaatat gaagaactac aagactgctt
     1261 ccgtacagtc ctattagcat ctggaagaca aatagcctta tagatcctga ctaccaaaaa
     1321 ttcattatca agtgctcatt atttgaaaaa atatcagata ttgtggaaca aatagctcaa
     1381 gcatttaaaa gaaatttagg gctgtgactc taatactctt ccatctttta gtactattac
     1441 ataataaata aatagtattt gttaataatt taa
//
LOCUS       XM_032618122            1422 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 21 C4orf47 homolog
            (C21H4orf47), transcript variant X2, mRNA.
ACCESSION   XM_032618122
VERSION     XM_032618122.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1422
                     /gene="C21H4orf47"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746623"
     CDS             294..1226
                     /gene="C21H4orf47"
                     /codon_start=1
                     /product="UPF0602 protein C4orf47 homolog isoform X1"
                     /protein_id="XP_032474013.1"
                     /db_xref="GeneID:116746623"
                     /translation="MPVEGGKTDMERIGLFSEMEYVTVGDKYVSQFNRPFNEAASKNR
                     QMLPGGSKEMSSLQAGYFDPHFVRIFEGEGYVNLNQVRRRHMMEEAKKNLGKAFLPSN
                     GDKKPCGLGSYYGTIGRPVPFFSAQSKPKEKYEPPGKNLYTNPGKKGTGYGYANVTIG
                     KQFSHSADFYDAAKLNDKKENEEHHRLLKGTPFKLNLYPREYFDTNPYLFEKPLPPIK
                     KAEKKEALANPFKPSSPGKKAGGMKAGTFDSYPSHSADPYGVKLTSHISSKGAKVFHP
                     PGGPKSRPTESIMTLNVKRALNMKNYKTASVQSY"
     misc_feature    315..1175
                     /gene="C21H4orf47"
                     /note="Domain of unknown function (DUF4586); Region:
                     DUF4586; pfam15239"
                     /db_xref="CDD:464579"
ORIGIN      
        1 gggcgggaag cagaagtctc cttttcgggt tagttcttgg aatggattct tccgtagccg
       61 gggtaacgcg ccacaataaa ccttgcggcg agcggagcgt gcggagcgtg cggagcagcc
      121 tagtagcgac gtgcagggcg ggaagcgctc ttgcggggct ggctcgtgcc cttctcagag
      181 gtgacttggt cctcgcaggc gtcagtgtag agtaggattt tgctatagaa gaagtagccc
      241 tcagcgaccc attgaagtta cctgtataga gcacaccacc acaagaagca accatgcctg
      301 tggaaggagg gaaaacagac atggagagga ttgggctctt cagtgagatg gaatatgtta
      361 ctgttggtga taaatatgtg tcacaattta atcgaccatt taatgaagct gcaagcaaaa
      421 atagacagat gctccctggg ggatccaaag agatgtcaag tctccaggca ggttattttg
      481 atccccattt tgtaaggatt tttgaaggtg aaggctacgt aaacctgaat caagtgagga
      541 gacggcatat gatggaagaa gccaaaaaaa atctaggcaa agcgttcctt cctagtaatg
      601 gagataagaa gccatgtgga ttaggaagtt actatggaac gataggtaga ccagtcccat
      661 ttttcagtgc acaatcaaaa cccaaagaaa aatatgagcc acctggaaag aatttgtaca
      721 caaacccagg aaagaaagga actggatatg gctatgcaaa tgttaccata ggtaaacagt
      781 tttcacactc tgctgatttc tatgatgcag caaaactaaa tgacaagaaa gagaatgaag
      841 aacaccatcg tttacttaaa gggacacctt tcaaattaaa tctttaccca agggaatatt
      901 ttgataccaa tccttatttg tttgagaaac ctttaccacc aattaaaaaa gcagagaaga
      961 aagaagcact tgcaaaccct tttaagccct cttctcctgg taaaaaggct ggtggaatga
     1021 aggcaggaac atttgattct tacccttcac attctgctga cccttatggg gttaaattga
     1081 caagccatat ttccagcaaa ggtgctaagg ttttccatcc accaggtgga ccaaaaagca
     1141 gaccaactga aagtataatg actttgaatg tcaaaagggc actaaatatg aagaactaca
     1201 agactgcttc cgtacagtcc tattagcatc tggaagacaa atagccttat agatcctgac
     1261 taccaaaaat tcattatcaa gtgctcatta tttgaaaaaa tatcagatat tgtggaacaa
     1321 atagctcaag catttaaaag aaatttaggg ctgtgactct aatactcttc catcttttag
     1381 tactattaca taataaataa atagtatttg ttaataattt aa
//
LOCUS       XM_032618123            1448 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 21 C4orf47 homolog
            (C21H4orf47), transcript variant X3, mRNA.
ACCESSION   XM_032618123
VERSION     XM_032618123.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1448
                     /gene="C21H4orf47"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746623"
     CDS             320..1252
                     /gene="C21H4orf47"
                     /codon_start=1
                     /product="UPF0602 protein C4orf47 homolog isoform X1"
                     /protein_id="XP_032474014.1"
                     /db_xref="GeneID:116746623"
                     /translation="MPVEGGKTDMERIGLFSEMEYVTVGDKYVSQFNRPFNEAASKNR
                     QMLPGGSKEMSSLQAGYFDPHFVRIFEGEGYVNLNQVRRRHMMEEAKKNLGKAFLPSN
                     GDKKPCGLGSYYGTIGRPVPFFSAQSKPKEKYEPPGKNLYTNPGKKGTGYGYANVTIG
                     KQFSHSADFYDAAKLNDKKENEEHHRLLKGTPFKLNLYPREYFDTNPYLFEKPLPPIK
                     KAEKKEALANPFKPSSPGKKAGGMKAGTFDSYPSHSADPYGVKLTSHISSKGAKVFHP
                     PGGPKSRPTESIMTLNVKRALNMKNYKTASVQSY"
     misc_feature    341..1201
                     /gene="C21H4orf47"
                     /note="Domain of unknown function (DUF4586); Region:
                     DUF4586; pfam15239"
                     /db_xref="CDD:464579"
ORIGIN      
        1 actgcgtcat tcgtttcccg cagacactct tacgtctttc ttgatgcgga ttcgaaccct
       61 ccacgtatcc ttccgtaggg ttagttcttg gaatggattc ttccgtagcc ggggtaacgc
      121 gccacaataa accttgcggc gagcggagcg tgcggagcgt gcggagcagc ctagtagcga
      181 cgtgcagggc gggaagcgct cttgcggggc tggctcgtgc ccttctcaga gtgtagagta
      241 ggattttgct atagaagaag tagccctcag cgacccattg aagttacctg tatagagcac
      301 accaccacaa gaagcaacca tgcctgtgga aggagggaaa acagacatgg agaggattgg
      361 gctcttcagt gagatggaat atgttactgt tggtgataaa tatgtgtcac aatttaatcg
      421 accatttaat gaagctgcaa gcaaaaatag acagatgctc cctgggggat ccaaagagat
      481 gtcaagtctc caggcaggtt attttgatcc ccattttgta aggatttttg aaggtgaagg
      541 ctacgtaaac ctgaatcaag tgaggagacg gcatatgatg gaagaagcca aaaaaaatct
      601 aggcaaagcg ttccttccta gtaatggaga taagaagcca tgtggattag gaagttacta
      661 tggaacgata ggtagaccag tcccattttt cagtgcacaa tcaaaaccca aagaaaaata
      721 tgagccacct ggaaagaatt tgtacacaaa cccaggaaag aaaggaactg gatatggcta
      781 tgcaaatgtt accataggta aacagttttc acactctgct gatttctatg atgcagcaaa
      841 actaaatgac aagaaagaga atgaagaaca ccatcgttta cttaaaggga cacctttcaa
      901 attaaatctt tacccaaggg aatattttga taccaatcct tatttgtttg agaaaccttt
      961 accaccaatt aaaaaagcag agaagaaaga agcacttgca aaccctttta agccctcttc
     1021 tcctggtaaa aaggctggtg gaatgaaggc aggaacattt gattcttacc cttcacattc
     1081 tgctgaccct tatggggtta aattgacaag ccatatttcc agcaaaggtg ctaaggtttt
     1141 ccatccacca ggtggaccaa aaagcagacc aactgaaagt ataatgactt tgaatgtcaa
     1201 aagggcacta aatatgaaga actacaagac tgcttccgta cagtcctatt agcatctgga
     1261 agacaaatag ccttatagat cctgactacc aaaaattcat tatcaagtgc tcattatttg
     1321 aaaaaatatc agatattgtg gaacaaatag ctcaagcatt taaaagaaat ttagggctgt
     1381 gactctaata ctcttccatc ttttagtact attacataat aaataaatag tatttgttaa
     1441 taatttaa
//
LOCUS       XM_032618124            1286 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 21 C4orf47 homolog
            (C21H4orf47), transcript variant X4, mRNA.
ACCESSION   XM_032618124
VERSION     XM_032618124.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1286
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1286
                     /gene="C21H4orf47"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746623"
     CDS             158..1090
                     /gene="C21H4orf47"
                     /codon_start=1
                     /product="UPF0602 protein C4orf47 homolog isoform X1"
                     /protein_id="XP_032474015.1"
                     /db_xref="GeneID:116746623"
                     /translation="MPVEGGKTDMERIGLFSEMEYVTVGDKYVSQFNRPFNEAASKNR
                     QMLPGGSKEMSSLQAGYFDPHFVRIFEGEGYVNLNQVRRRHMMEEAKKNLGKAFLPSN
                     GDKKPCGLGSYYGTIGRPVPFFSAQSKPKEKYEPPGKNLYTNPGKKGTGYGYANVTIG
                     KQFSHSADFYDAAKLNDKKENEEHHRLLKGTPFKLNLYPREYFDTNPYLFEKPLPPIK
                     KAEKKEALANPFKPSSPGKKAGGMKAGTFDSYPSHSADPYGVKLTSHISSKGAKVFHP
                     PGGPKSRPTESIMTLNVKRALNMKNYKTASVQSY"
     misc_feature    179..1039
                     /gene="C21H4orf47"
                     /note="Domain of unknown function (DUF4586); Region:
                     DUF4586; pfam15239"
                     /db_xref="CDD:464579"
ORIGIN      
        1 cacggggcgt accaccacgc cacatctcgc ggatggataa tagggcggga agcagaagtc
       61 tccttttcgt gtagagtagg attttgctat agaagaagta gccctcagcg acccattgaa
      121 gttacctgta tagagcacac caccacaaga agcaaccatg cctgtggaag gagggaaaac
      181 agacatggag aggattgggc tcttcagtga gatggaatat gttactgttg gtgataaata
      241 tgtgtcacaa tttaatcgac catttaatga agctgcaagc aaaaatagac agatgctccc
      301 tgggggatcc aaagagatgt caagtctcca ggcaggttat tttgatcccc attttgtaag
      361 gatttttgaa ggtgaaggct acgtaaacct gaatcaagtg aggagacggc atatgatgga
      421 agaagccaaa aaaaatctag gcaaagcgtt ccttcctagt aatggagata agaagccatg
      481 tggattagga agttactatg gaacgatagg tagaccagtc ccatttttca gtgcacaatc
      541 aaaacccaaa gaaaaatatg agccacctgg aaagaatttg tacacaaacc caggaaagaa
      601 aggaactgga tatggctatg caaatgttac cataggtaaa cagttttcac actctgctga
      661 tttctatgat gcagcaaaac taaatgacaa gaaagagaat gaagaacacc atcgtttact
      721 taaagggaca cctttcaaat taaatcttta cccaagggaa tattttgata ccaatcctta
      781 tttgtttgag aaacctttac caccaattaa aaaagcagag aagaaagaag cacttgcaaa
      841 cccttttaag ccctcttctc ctggtaaaaa ggctggtgga atgaaggcag gaacatttga
      901 ttcttaccct tcacattctg ctgaccctta tggggttaaa ttgacaagcc atatttccag
      961 caaaggtgct aaggttttcc atccaccagg tggaccaaaa agcagaccaa ctgaaagtat
     1021 aatgactttg aatgtcaaaa gggcactaaa tatgaagaac tacaagactg cttccgtaca
     1081 gtcctattag catctggaag acaaatagcc ttatagatcc tgactaccaa aaattcatta
     1141 tcaagtgctc attatttgaa aaaatatcag atattgtgga acaaatagct caagcattta
     1201 aaagaaattt agggctgtga ctctaatact cttccatctt ttagtactat tacataataa
     1261 ataaatagta tttgttaata atttaa
//
LOCUS       XM_032618126            1250 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 21 C4orf47 homolog
            (C21H4orf47), transcript variant X5, mRNA.
ACCESSION   XM_032618126
VERSION     XM_032618126.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1250
                     /gene="C21H4orf47"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746623"
     CDS             345..1133
                     /gene="C21H4orf47"
                     /codon_start=1
                     /product="UPF0602 protein C4orf47 homolog isoform X2"
                     /protein_id="XP_032474017.1"
                     /db_xref="GeneID:116746623"
                     /translation="MPVEGGKTDMERIGLFSEMEYVTVGDKYVSQFNRPFNEAASKNR
                     QMLPGGSKEMSSLQAGYFDPHFVRIFEGEGYVNLNQVRRRHMMEEAKKNLGKAFLPSN
                     GDKKPCGLGSYYGTIGRPVPFFSAQSKPKEKYEPPGKNLYTNPGKKGTGYGYANVTIG
                     KQFSHSADFYDAAKLNDKKENEEHHRLLKGTPFKLNLYPREYFDTNPYLFEKPLPPIK
                     KAEKKEALANPFKPSSPGKKGTKYEELQDCFRTVLLASGRQIAL"
     misc_feature    366..1076
                     /gene="C21H4orf47"
                     /note="Domain of unknown function (DUF4586); Region:
                     DUF4586; pfam15239"
                     /db_xref="CDD:464579"
ORIGIN      
        1 actgcgtcat tcgtttcccg cagacactct tacgtctttc ttgatgcgga ttcgaaccct
       61 ccacgtatcc ttccgtaggg ttagttcttg gaatggattc ttccgtagcc ggggtaacgc
      121 gccacaataa accttgcggc gagcggagcg tgcggagcgt gcggagcagc ctagtagcga
      181 cgtgcagggc gggaagcgct cttgcggggc tggctcgtgc ccttctcaga ggtgacttgg
      241 tcctcgcagg cgtcagtgta gagtaggatt ttgctataga agaagtagcc ctcagcgacc
      301 cattgaagtt acctgtatag agcacaccac cacaagaagc aaccatgcct gtggaaggag
      361 ggaaaacaga catggagagg attgggctct tcagtgagat ggaatatgtt actgttggtg
      421 ataaatatgt gtcacaattt aatcgaccat ttaatgaagc tgcaagcaaa aatagacaga
      481 tgctccctgg gggatccaaa gagatgtcaa gtctccaggc aggttatttt gatccccatt
      541 ttgtaaggat ttttgaaggt gaaggctacg taaacctgaa tcaagtgagg agacggcata
      601 tgatggaaga agccaaaaaa aatctaggca aagcgttcct tcctagtaat ggagataaga
      661 agccatgtgg attaggaagt tactatggaa cgataggtag accagtccca tttttcagtg
      721 cacaatcaaa acccaaagaa aaatatgagc cacctggaaa gaatttgtac acaaacccag
      781 gaaagaaagg aactggatat ggctatgcaa atgttaccat aggtaaacag ttttcacact
      841 ctgctgattt ctatgatgca gcaaaactaa atgacaagaa agagaatgaa gaacaccatc
      901 gtttacttaa agggacacct ttcaaattaa atctttaccc aagggaatat tttgatacca
      961 atccttattt gtttgagaaa cctttaccac caattaaaaa agcagagaag aaagaagcac
     1021 ttgcaaaccc ttttaagccc tcttctcctg gtaaaaaggg cactaaatat gaagaactac
     1081 aagactgctt ccgtacagtc ctattagcat ctggaagaca aatagcctta tagatcctga
     1141 ctaccaaaaa ttcattatca agtgctcatt atttgaaaaa atatcagata ttgtggaaca
     1201 aatagctcaa gcatttaaaa gaaatttagg gctgtgactc taatactctt
//
LOCUS       XM_032618127            2598 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus disintegrin and metalloproteinase
            domain-containing protein 18-like (LOC116746624), mRNA.
ACCESSION   XM_032618127
VERSION     XM_032618127.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2598
                     /gene="LOC116746624"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746624"
     CDS             320..2530
                     /gene="LOC116746624"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 18-like"
                     /protein_id="XP_032474018.1"
                     /db_xref="GeneID:116746624"
                     /translation="MFLLVALLAELGGLHALQDSEGIFLYVTVPQKMRSNESEDSEKQ
                     VTYSITIDKKPYTLHLRKHSFVSQNFLVYTYNETGSLHSESSYFKMHCHYQGYVADFP
                     NSVVTLSICSGLRGFLQFENISYGIEPLESSARFEHIIYQVKNDNPDMPMLAENYSNI
                     WQKDQPYKIHLNSQEKTLSELLPRYLEMHIIVEKALHDYMGSEMMAVMQKIIQLIGLV
                     NTMLSQFKLTVMLSSLELWSDKNQISTNGDADDLLQRFLTWKQDYLILRPHDVTFLLI
                     YRKQPKYVGATFPGTICNKSCDAGIAMYPGAITLEGFSVIIAQLLGLKIGLTYDDIHK
                     CSCPSAMCIMNHEAVVSSGIKMFSNCSMRDYRYFVSTFEGQCLQNFSKLKPLYQNQSV
                     CGNGILEPQEECDCDGEQECQFKNCCDYNTCKLKGSVKCGSGSCCTSKCEISVAGTPC
                     RKSVDQECDFTEYCNGTSSNCIPDTYAMNGQLCRLGTAYCYNGRCQTTDNQCAKILGK
                     GAQGAPFACFEEVNSLRNSLGNCGFKNSQPLPCEQKDVLCGKLACVWPHNNTYKSDVR
                     SAVYSSTQGHVCITIGSSVRSGGRDYAYVADGTVCGSQMYCINKTCKEVPLMGYNCNA
                     TTKCRGNGICNNLGNCHCFPGYRPPDCELQIGSPGGSIDDGNDHKSVTIFTKKGYNAH
                     QNWFILSFYIVLPFFIIFTIMIMKRNEMRKSRNKESAEYEGHSAIVPESYDVDY"
     misc_feature    398..742
                     /gene="LOC116746624"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    869..1456
                     /gene="LOC116746624"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(1274..1279,1286..1288,1304..1306)
                     /gene="LOC116746624"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1514..1741
                     /gene="LOC116746624"
                     /note="Region: Disintegrin; pfam00200"
                     /db_xref="CDD:459709"
     misc_feature    1751..2164
                     /gene="LOC116746624"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 cgtggccctg ctaatcgctc ccatctcaag agaggacacc tagaatctgc acctctgcaa
       61 tagttcatga ctctcatccc ctacccattc caagcttcgg gatattgaga ggaagggttg
      121 ctagacaagc ctcgagtgcc cagtcactca ggatgcccaa ggatgagcca gcacagctga
      181 aagcgactgc gaggccctgg tcctcacccc cagggcccgg gggcctagcg cgctgaaccc
      241 ctgactgctg ctgcccgcga gcctcacggc tgcccaacgg tctctgacct tggccgtgct
      301 tccagcgccc cgagcagcga tgttcctcct cgttgccctg cttgctgagc ttggagggct
      361 acacgccctc caggattctg agggaatatt cctgtatgtc acagttccac agaagatgag
      421 gtcgaatgag agtgaagatt cagagaagca ggtgacttat agcattacaa ttgataaaaa
      481 accatacact ctgcatctca ggaaacactc attcgtatcc cagaactttt tggtttatac
      541 atacaacgaa actggatctt tgcattctga gtcttcatat tttaagatgc attgccatta
      601 ccaaggatac gttgcagatt ttccaaattc agtcgtgaca ctcagcatct gttctggact
      661 caggggattt cttcagtttg aaaatatcag ctatggaatt gagccattgg aatcttcagc
      721 aaggttcgag cacataattt atcaagtgaa aaatgacaat ccagatatgc cgatgttagc
      781 agaaaattac agcaatattt ggcagaaaga ccagccctat aaaatccatt taaactcaca
      841 ggaaaaaact ctttcagaac tattaccccg gtatctagaa atgcacatta tagtggaaaa
      901 agctttgcat gattatatgg gatcagaaat gatggctgta atgcagaaaa ttattcagct
      961 tattggcctt gtcaacacaa tgcttagtca gttcaaattg actgtgatgc tatcctcctt
     1021 ggaattgtgg tcagataaaa accaaatttc tactaatggg gatgctgatg atttattaca
     1081 aagatttttg acatggaaac aggactatct tatcctacgg ccccatgacg taacattctt
     1141 acttatttac aggaaacagc ctaaatatgt gggagcaaca tttcctggca caatatgcaa
     1201 taaaagctgt gacgcaggta ttgctatgta tccaggtgca ataacattgg agggattttc
     1261 cgttattata gctcaactgc ttggccttaa aataggatta acatatgatg acatccataa
     1321 atgttcctgt ccaagcgcta tgtgcataat gaatcatgaa gcagtggttt ccagtggtat
     1381 aaagatgttt agcaactgca gcatgcgtga ctatagatat tttgtttcaa catttgaggg
     1441 tcagtgtctt cagaactttt caaaactgaa accattatat caaaatcagt cggtgtgtgg
     1501 taatgggatt ttggaacctc aggaagaatg tgactgtgac ggtgaacagg aatgtcagtt
     1561 taagaactgc tgtgattata atacatgtaa actgaaaggc tcagtaaaat gtggttctgg
     1621 atcatgctgt acatcaaaat gtgagatatc agtagcaggc actccctgta gaaaaagtgt
     1681 tgatcaagag tgtgatttta ccgagtattg caatgggact tccagtaatt gcattcctga
     1741 cacgtatgca atgaacggcc aattgtgcag gttgggaact gcatactgtt acaatggacg
     1801 atgccaaact accgataacc agtgtgccaa gatacttgga aaaggtgctc aaggtgctcc
     1861 atttgcctgt tttgaagaag ttaattctct gcgtaatagt cttggaaact gtggttttaa
     1921 aaactcccaa ccattacctt gtgaacagaa ggatgttctt tgtggaaaat tggcttgtgt
     1981 ttggccacat aataatactt acaaaagtga tgttcgatct gcagtttatt catctactca
     2041 aggacatgta tgcataacta ttgggtcatc agtgagatct ggtggaagag attatgccta
     2101 tgtggctgat ggcactgtgt gtggttcaca aatgtattgt ataaataaaa cctgcaaaga
     2161 agttccttta atggggtata attgtaatgc cactacaaaa tgcagaggaa atgggatatg
     2221 taataattta ggcaattgtc attgctttcc tgggtatagg cctccagatt gtgaattaca
     2281 aattggttca ccgggaggaa gtattgatga tggaaatgat cataaatctg ttacaatttt
     2341 tactaaaaaa ggctacaatg cacatcagaa ctggtttata ttgagtttct acattgttct
     2401 gccctttttc ataattttca ccattatgat catgaagcga aatgaaatga gaaaatcacg
     2461 caacaaagag agtgcagaat atgagggtca ttcagccatt gtaccagaga gttatgacgt
     2521 ggactattaa tgttgccaag aacttcatca tcaagtgggt tacatgcaga agagaaggtg
     2581 ttttgtaacc ctatgata
//
LOCUS       XM_032618128            4039 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus potassium calcium-activated channel
            subfamily U member 1 (KCNU1), mRNA.
ACCESSION   XM_032618128
VERSION     XM_032618128.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4039
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4039
                     /gene="KCNU1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 95% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746625"
     CDS             345..3641
                     /gene="KCNU1"
                     /codon_start=1
                     /product="potassium channel subfamily U member 1"
                     /protein_id="XP_032474019.1"
                     /db_xref="GeneID:116746625"
                     /translation="MSCSMDRKHSRSLTFQGVFRDRVEMLLSAQTFVGQVLVILVFVL
                     SIGSLIIYFINSTDPFGSCSSYQDKTIPIDLTFNAFFSFYFGLRFLAADDKVKFWLEM
                     NSIVDIFTIPPTFISYYLKSNWLGLRFLRALRLLELPRILQILRAIRTSNSVKFSKLL
                     SIVLSTLFTAAGFLHLVENSGDPWLKGRNSQNISYFDSIYLVTATTSTVGFGDVVAKT
                     SLGRTFIMFFTLGSLVLFANYVPEMVELFGNKRKYTSSYEVVKGKKFIVVCGNITVDS
                     VTAFLRNFLRHKAGEINTEIVFLGEVPPSLELETIFKCYMAYTTFVSGSALKWEDLRR
                     VRVDSAEACLIIANPLCSDSHAEDTSNIMRVLSIKNYYPNTRVIIQILQSHNKVFLPK
                     IPSWNWNTGDNIICFAELKLGFIAQGCLVPGLCTFLTSLFIEQNKKICPKEPWQKHFF
                     GGLKNKILTQRLSDDFAGMSFPDVCRLCFVKMHLMLIAIELKSVCHGYCGLILNPPAQ
                     VKLRKNTLGFFIAESAKDVKRAFFYCAVCHSDVYTPELIGKCSCKSRNPRHKTGTTVT
                     VMRNNGREHSGPKTQDSCPATHMSMAGNLSLTTRNHFLGTSPAANIMERAFWKRAFLY
                     EMERESDRLDSSGMFHWCKATPLDKMILNRTEKSKHEFRNHIVACVFGDAHSTLMGLR
                     NFVMPLRASSYTRQELKDIVFVGSLDYLQREWRFLQNFPQIYILPGSALYSGDLHAVN
                     IEECSMCAVLSSPSKSSSSPTLVDTEPIMATLNIRSLRISCSAHTPSEPRCTWCFSDH
                     PGKSKCRRIPILTELKNPSNMHFIEQLGGMDGDLSGMSLHLSTSFATGTVFSGSFLDS
                     LLATAFYNYHVLELLQMLVTGGISSQLEQHLDKEKFCGLNDSYSTVSPGRMRCKLGLL
                     SLNQTVLSDIQPRRTFGQIFCSSLDNLGVLCLGLYRMIDEEERNPEHKRGVFVITRPE
                     NEFMLLPSDLVFCAIPFSTSCYKKDISPPSPCEIINMVPLTEETLTDINCPPSVDQVS
                     ESAAQPPSTSVHSLEPKPIPVGDPKQAVLTPSGKLSSQTHPGETRKENGKENMEETTV
                     EDASAYPESD"
     misc_feature    447..1109
                     /gene="KCNU1"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
     misc_feature    <939..1523
                     /gene="KCNU1"
                     /note="voltage-gated potassium channel protein; Region:
                     PRK10537"
                     /db_xref="CDD:236711"
     misc_feature    1548..1811
                     /gene="KCNU1"
                     /note="Calcium-activated BK potassium channel alpha
                     subunit; Region: BK_channel_a; pfam03493"
                     /db_xref="CDD:460947"
ORIGIN      
        1 cgcacgtggg ccccacgctt acccatgacg cccctcgctc acgcccggcc ggaactgctt
       61 tggacggtca ccttgtgatg tgcgtgactg tgttgagtaa gaagaaggag aaatgacaga
      121 agagcgcaga ggggtcctct ctcatctgag acagcacttt tcaagtagcc tttccacaat
      181 tccacacatt tccacataca tcttcttggt cttatcgtct tttaaaaaat gcaccgggaa
      241 aaaaatggtc tcttctcttc acatgctttg aatggattta atcctcctca tttgtctcct
      301 gactttgaac tgcaaaacaa aggacatgga agaccaagga agaaatgtca tgtagcatgg
      361 accgtaaaca ttcaagaagt ctcactttcc agggagtctt tcgtgatcgt gtagaaatgt
      421 tgctctcggc acagaccttt gtgggacagg tgttggtgat ccttgtcttt gtcctaagca
      481 ttgggtctct tataatctat ttcatcaact ccactgaccc ttttggaagc tgttcttcat
      541 accaagacaa aaccatcccg attgatttga ctttcaatgc tttctttagt ttctattttg
      601 gattgagatt tttggcagct gatgacaagg tcaagttctg gttggagatg aattcgattg
      661 tagacatctt taccattcca ccaaccttta tttcttatta tttgaagagt aattggctag
      721 gtttaaggtt cttaagagca ttgcggctgc tggaactccc tcgaatcttg caaattctga
      781 gagccatcag gaccagcaat tcagtgaagt tttccaagct gttatccatc gttctgagta
      841 ccttgttcac tgctgcagga ttccttcacc tggtggaaaa ttctggtgat ccctggctca
      901 aaggtagaaa ttcacagaat atttcatatt ttgactccat ttacctggtc acggcaacga
      961 cgtcgactgt cggctttgga gatgtggtag ccaagacatc cctaggacgg accttcatca
     1021 tgttcttcac cctggggagt ttggttctgt ttgccaacta cgtccctgaa atggtggaac
     1081 tttttggtaa caagaggaaa tacaccagtt cctatgaagt ggtcaaagga aagaagttca
     1141 ttgtggtctg tggaaacatc actgtggaca gtgtgacggc tttcctgagg aattttctcc
     1201 gccataaggc aggggagatc aatactgaga ttgttttcct gggagaggtt cctccttctt
     1261 tggaattgga aaccatattt aagtgctaca tggcctatac aactttcgtt tctggatctg
     1321 cgctgaagtg ggaggatctg aggcgagtta gggtggactc tgcagaagca tgcctgatta
     1381 tagccaaccc tctgtgcagt gattcacatg ctgaagacac ttcaaacatt atgagggtgc
     1441 tctctatcaa gaactattac cctaatacca gagtcatcat acagatactt cagtcccata
     1501 acaaggtttt tctgccaaag atccccagct ggaactggaa tactggagac aacatcatct
     1561 gctttgctga attaaagctc ggatttatcg cccaaggctg tttggtgcca ggcttgtgta
     1621 cctttctaac atctctattt attgagcaaa acaagaagat ctgccctaag gagccctggc
     1681 agaaacattt ctttggcggc ctgaagaaca aaatcctgac tcaacgcctc tctgatgact
     1741 ttgctggaat gagctttcct gatgtttgcc ggctctgctt cgtgaagatg cacctcatgc
     1801 tgatagccat cgaactcaag tccgtgtgtc acggttactg tgggctgata ctaaatccac
     1861 ctgctcaagt taagctccgt aagaacacac tggggttctt cattgctgaa tctgcaaagg
     1921 atgtcaaaag agccttcttt tactgtgccg tctgtcacag tgacgtgtat actcctgagc
     1981 taattggaaa atgtagctgc aaaagcagga atcctcgaca caagacaggg acaacagtca
     2041 cggtgatgag aaacaacgga agggaacact ctggtccaaa aacacaggac tcctgcccag
     2101 cgacacatat gagcatggct ggcaacttga gcttgaccac cagaaatcat ttcctcggga
     2161 cttctccagc tgctaatatt atggaacgtg cattttggaa aagggctttt ctatacgaaa
     2221 tggagcgaga gtctgaccgc ctcgatagca gtggcatgtt tcactggtgc aaagccaccc
     2281 ctttggacaa aatgattctg aatcgaactg agaagtcaaa acatgagttt cggaaccaca
     2341 ttgtagcgtg tgtctttgga gatgcccact caacactgat ggggcttcgg aattttgtaa
     2401 tgccattgag agctagcagc tatacccgtc aggagctgaa ggacattgtg ttcgttgggt
     2461 ctctggatta cctgcagaga gaatggcgat ttctccagaa ttttccccag atatacattc
     2521 tgcctggatc tgcgctctat tctggagacc ttcatgcagt caacatagag gaatgttcca
     2581 tgtgtgctgt cttatcctcc ccatctaagt catccagcag cccgaccttg gtggacacgg
     2641 agcctatcat ggccacactc aacatcagat cacttcggat tagctgctca gcccacacac
     2701 cctcagagcc acggtgtact tggtgcttca gtgaccatcc tgggaagtca aagtgccgaa
     2761 ggatccccat cctcactgaa ctgaaaaatc cttccaacat gcactttatt gaacagctcg
     2821 gtgggatgga cggagacctc tcgggaatga gcctgcacct cagcacgtcc tttgccaccg
     2881 gcactgtctt ttccggcagc ttcttggatt ccctcctggc cacggcgttc tacaattacc
     2941 acgttctgga attacttcag atgctggtga caggagggat cagttctcag ctggaacaac
     3001 atctggataa ggaaaagttc tgtgggctga atgacagtta ctctaccgtt tcacctggaa
     3061 gaatgcggtg taagctgggg cttctgtcct taaaccaaac cgttttgtca gacattcaac
     3121 caagaaggac ctttggacaa atcttctgca gctcgttaga taaccttgga gtcctgtgcc
     3181 tcggcttgta ccgcatgata gatgaggaag agcgcaaccc agagcacaaa aggggagtgt
     3241 ttgtgatcac ccggccagaa aacgagttta tgctgctgcc ctcggatctt gtgttttgcg
     3301 ccatcccttt cagcacctcc tgttacaaaa aggatatttc acctccaagt ccgtgtgaaa
     3361 ttataaatat ggtgccactg acagaagaga cgcttacaga cataaattgt cctccttcag
     3421 ttgaccaggt cagcgagtct gcagcccagc cacccagtac atcagtccat tcgctggagc
     3481 caaaaccaat ccccgttggt gatcctaagc aagcagtgtt gactccaagt ggtaaactct
     3541 catcccagac acatccaggt gaaaccagga aagaaaacgg aaaggaaaac atggaggaaa
     3601 ccacagtgga agatgcctct gcctatcccg agtcagacta gacctgccga tatttcccag
     3661 gagctcctgg ctcactcctt acgaggcatc tccagaggtg gtgactttga acaaggaagg
     3721 aaaagatgga cgcccgccat ttttgtggcc attgctgagg ggtggatcag caagcccaca
     3781 ctgtttggga agagacaaaa gtccgagcta atcccactgg atctggtgtg ataaataaag
     3841 aaatagatga taaaagcctc tctaagggaa gttcattgct ctgggtctct tgagcagaaa
     3901 acgtgatggt tggacctgtg ttaaagacat tgttcagtac ttgctgggtt cctccacaca
     3961 gggaatataa gaagtaatca aggtaaaaac gagaaggatt tagacctaag agacaagaaa
     4021 taaagtgccc ccaaatcaa
//
LOCUS       XR_004347813            2130 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746626
            (LOC116746626), ncRNA.
ACCESSION   XR_004347813
VERSION     XR_004347813.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2130
                     /gene="LOC116746626"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746626"
     ncRNA           1..2130
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746626"
                     /product="uncharacterized LOC116746626"
                     /db_xref="GeneID:116746626"
ORIGIN      
        1 tgcatattgc ttcagatgta gtttgtgatg atgttgagat agaatattaa tataagaaat
       61 gaaagagtat gtgatgtata aaaacaagct ggagacatcc atcaggagaa gagtcctcag
      121 gtcaaataac cccttgggga ggaagagatg acatggtttc agatggccat cctgaactac
      181 aagaggacac aaggtgatgg aggaaaacaa gagagaaaaa ggagaaaaca acctatgaaa
      241 taaacttaaa accctggaga atgttccttg gtttgtctag ctcttgaaga agaatcctac
      301 ggaccttgct ccttcatcgt gctagaggaa agatgatagg aaatattaaa acaggaaaag
      361 gaagagcaga tcttctacag gacagtttta tttctacaaa atgacttcag gtgaaatcct
      421 ccagacatca ccaaaggctt caactacaga aaatgaaatg aaacaaaagc actaatacga
      481 acttcaaaga aagcaaacag actggagagc tctctaggtc caggagtcag agttcctaac
      541 caatgggaga gacagaagct tgaacagccc cctttatttc agtgggagaa aaatctctgg
      601 aatgttattt gcataactgt gacctcaatt caatacaaca tgtccaagca ggataattgg
      661 atttggctta taagaaacat gagaaaagaa gatttacaag caacctatgc tggatttaag
      721 atcttctaca gagaattgac ttaatgtggt ctccatcttc tccactgaca gaatcccatg
      781 atttggacta gcagagcaaa atgagagaat tggattagat gtaaaaggtt tctagaaaaa
      841 actctgagtc ttctgccctg atgatctatg agtaggaaat gtgataatat agcagcctac
      901 ccagagagct ttaaattcca tgctgcccat tttcagaagg aataatgact tcccagctgg
      961 agagtcacca tgttcatcac ttacagaggc tgggtacttg gcaatctcga ccaaaatatt
     1021 agctaaggat acctgggaaa taaaggaaag ccttccttat tgatatttgc aaattacaag
     1081 tcttgatgtg gttttgagtt atatatcacc tatatgatct attgtaatta gctatatata
     1141 tgacataact gtacatatga cacctatgca cacgacagat atgtgtaggt gtatattacc
     1201 tatatgaaag aatatttgga acattttctt ctcaagaaag tatttctgta gatttggaga
     1261 caattttctt gctccacaat tgtgtatttc tcctcttatt caaaatactc ttctgtgtaa
     1321 gaaagtgacc aaggggactt ccctggcggt ccagtggtca agactctgtg ctttcacggc
     1381 agggggtgcg ggttcgatcc ctagtcaggg aattaagatc ctgcatgccg cgcaaacgcg
     1441 gccaacaaaa aaaaaaaaga aaaaaagaaa gtgactaaaa tgcaattgtc ttcctcatca
     1501 aaggaaatta gattatttat attataagtc tccctctctc caccaagtca aacaatatta
     1561 gcctcccgtt tcatcctaaa acaaaaagcc ttcaggagca ggggtgaagg ggccacagga
     1621 aagagataca ctggaaagaa ccctgaaatg tgggacccat ttccaccttt gccctggagc
     1681 agctgtgtgc ctttgagcaa atcatgtgac ctcttagggc ttcagcttcc tggtctgtag
     1741 aatgtagagt tgaaccagag agtttcttag gcgtgtgtgc acagaagaat cacgtgtgtc
     1801 tacccaatgt gcacagaaga atcacctaca gtcttcgaaa gagatgagtt ccttgaaata
     1861 ggtaatggtg ttttaaaccc agagcttacc acaggatgtg acacatagtt aaggttgcca
     1921 gatttagcaa ataaaaacac aggatgttca gttaaatttg gatttcaaat aaatgatgaa
     1981 tacattttta acatgagtat gtcccaaata tttatctgac aacctgacac ataaaggaag
     2041 tcaaagtttg ttcatgtgat gaacttacat catcaagcct ctactggtgg gaattttaga
     2101 taaagaatgg gaagtggtag gggatgtgtg
//
LOCUS       XM_032618129            2002 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus indoleamine 2,3-dioxygenase 1 (IDO1),
            mRNA.
ACCESSION   XM_032618129
VERSION     XM_032618129.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2002
                     /gene="IDO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746627"
     CDS             41..1273
                     /gene="IDO1"
                     /codon_start=1
                     /product="indoleamine 2,3-dioxygenase 1"
                     /protein_id="XP_032474020.1"
                     /db_xref="GeneID:116746627"
                     /translation="MAPGKSSPVENSWKIFEEYHIDEDVGFALPNPLEELPHPYDAWI
                     SIAKNLPELIKNGQLRAEVEKLTTFSIDGLQGHKLQRLAHLVLGYITMAYVWGEGDGD
                     VRKVLPGNIAVPYCKVSEKLGLPPILVYADCVLANWKKKDPSGPMTYENMDILFSFPG
                     GDCGKGFFLVSLVVETAAASAIKVIPIIFNAIQREDPDTLQKALRDIASCLHKALEMF
                     HQIHEYVDPNLFFNVLRIYLSGWKGNPLLSEGLLYEGVWDTPKKFAGGSAAQSSIFQC
                     FDILLGIEHTVGGVPSDSAARFLQEMRTYMPSAHQNFLRSLESGPSVRKFVLSKGDAT
                     LQEIYNECVQAMVSLRNYHLQIVAKYIVIPASQPSKRKQTSEEPSEPKSKGTGGTDFM
                     GFLKTVRRTTANSLLKED"
     misc_feature    86..1249
                     /gene="IDO1"
                     /note="Indoleamine 2,3-dioxygenase; Region: IDO;
                     pfam01231"
                     /db_xref="CDD:460123"
ORIGIN      
        1 ctcaggagac tgagaagtac cagaggagca ggctgtaaga atggcacctg gcaagtcatc
       61 tcctgtggaa aattcttgga agatctttga agaataccac atagatgaag atgtgggctt
      121 tgctctgccc aatccactgg aggagctacc tcacccttat gatgcctgga tttccattgc
      181 taaaaatctg cctgaactga ttaagaatgg ccaactacgt gcagaagttg agaagttaac
      241 aaccttcagc attgacggcc tccaaggaca caagttgcag cgcctggcac atctggttct
      301 ggggtatatc accatggcgt acgtgtgggg tgaaggtgat ggagacgtcc ggaaggtctt
      361 gccgggcaat attgctgttc cttactgcaa ggtatccgag aagctaggac tgccccctat
      421 tctggtttat gcagattgtg tcttggcaaa ctggaagaaa aaggatccca gtgggcccat
      481 gacttatgag aacatggaca tcctattctc gtttcctggc ggggactgtg gtaaagggtt
      541 cttcctggtc tctctggtgg tggaaacagc ggcggcttct gcaatcaaag tgatccccat
      601 tatatttaat gcaatacaac gtgaagaccc agacactttg caaaaggcat tgcgtgatat
      661 agcttcttgt ctgcacaaag cccttgaaat gtttcaccaa attcatgaat atgtggaccc
      721 aaacctattt ttcaatgttc ttcgcatata cttgtctggt tggaaaggca accctttgct
      781 gtcagagggt ctgctgtatg aaggcgtctg ggacacccca aagaagtttg ccggaggcag
      841 tgcagcccaa agcagcatct ttcagtgctt cgatattctg ctgggcattg agcatactgt
      901 tggtggagtt ccttcagact ctgctgctag attcctccag gaaatgagaa catatatgcc
      961 ctcagctcac cagaactttc ttcgctcgtt agagtcaggc ccctcggtcc gtaagtttgt
     1021 cctttcaaaa ggtgatgcta ccctgcagga aatttataat gaatgtgtgc aagctatggt
     1081 ctctctgaga aactaccatt tgcaaatagt agctaagtac attgtgattc ctgcaagcca
     1141 gccatccaag agaaaacaaa cctcggaaga gccttctgaa ccaaaaagta aaggaactgg
     1201 aggcaccgat ttcatggggt ttctaaagac tgtaagacgt acaactgcga actccctgtt
     1261 gaaggaagat taatgtaatc caagaaagtg ctcatattgc taccacatgt gacaatgtca
     1321 cttcccatta tatcagaaat agcattaaca ttcataactt gaggagggga aaataaaact
     1381 gatgtccatt aaaaaaaaac ccgcacatgg gtgtttatag cagtttgatt cataattgcc
     1441 aaaacttgga agcatgaaat aaaccaaggc acccatcctt acagtagaat attattcagg
     1501 gctaaaaaga aatgagtgat caagccatga aaagacctgc agaaacatga catgcatgtt
     1561 attaagtgaa agatgtcact ctgaaaaggc tacagactgt gtgattccaa ctatgtgaca
     1621 ttctggaaaa aggtaaaacc atggaggcag taaaaggatc agtgattgcc aggggttagg
     1681 gcagagggag tgatgaacag gagaagcaca gaggatgttt agggcagtga aactattctg
     1741 tatgatagta taatggtgga tacatgccat acatttccca aaacccatag aatgtacacc
     1801 accagcagtg aaccttaatg taaattgtga actttggaag ctcataatgt atcaatgtag
     1861 gtttatcagt tgtaacaagg gtaccattct ggtgtgcaga gctgtgcgtg tgttgggtag
     1921 aagatacatg gggactctgt actttctgtt caattttgct atgggctaaa actgatataa
     1981 aaaaaaaaaa tgtctgttaa aa
//
LOCUS       XM_032618130            1331 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcriptional and immune response
            regulator (TCIM), mRNA.
ACCESSION   XM_032618130
VERSION     XM_032618130.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1331
                     /gene="TCIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746628"
     CDS             123..443
                     /gene="TCIM"
                     /codon_start=1
                     /product="transcriptional and immune response regulator"
                     /protein_id="XP_032474021.1"
                     /db_xref="GeneID:116746628"
                     /translation="MKAKPSHPARSMSTSLRVSPSIHGYHFDTASRKKAVGNIFENID
                     QEALQRLFKNSGDKKAEERAKIIFAIDQDLEEKTRALMALKKRTKDKLFQFLKLRKYS
                     IKVH"
     misc_feature    153..377
                     /gene="TCIM"
                     /note="Thyroid cancer protein 1; Region: TC1; pfam15063"
                     /db_xref="CDD:464478"
ORIGIN      
        1 atgtcaccag tgtaatctga gcctggagct tttgttcaca ctttaaatag cagtcccgga
       61 atgattttgc tacagactct ctggagagcc cgggagctga attcccgaag attcacatat
      121 cgatgaaagc caagccaagc cacccggcca gaagcatgtc cacctcattg cgagtaagcc
      181 cgtccatcca cggctaccac ttcgacacag cctcacgtaa gaaagccgtg ggcaacatct
      241 ttgaaaacat agaccaagaa gcattacaga ggctcttcaa aaactctggg gacaagaaag
      301 cagaggagag agctaagatc atttttgcca tagatcaaga tttggaggag aaaacacgag
      361 ccctgatggc tctgaagaag aggacgaaag acaagctttt ccaatttctg aaactgcgga
      421 aatattccat caaagttcac tgaggaccag aggatggata aggacattag ccgagaccgg
      481 acatttaaag accaagccag tctaacgcgc acagcatctt gttgctgcct tgtaagtttc
      541 tcttccatag gaacggaacg aacttgttac aaagactcca actaatttca cgcctgtgct
      601 gttacagtgg agaaggaaat gctttcagca aggactggaa aacttcccct gagggaaaag
      661 gaccgatgct gatgagtctg gacagacata atgagaactg aaactgaaga taacagaagt
      721 ctggggaaga atggaggcca gggtctccct gtcaggccct aggacttaaa ctcaacctga
      781 actttttttc cttaaccaaa ctgggtaggg ggagggaaat ggggaacagg agagagaatt
      841 ccatgctgca attgtttact gaatttttta tttgaatgtt caaagtgttg ccaagcttca
      901 atgttgtcta ttggtagatt tttttttttt agagatcagt aattgattat ttatttgcat
      961 ttattacaat gccttaaaaa gtgcaccaca tgggtgtaag tacaaattca aggaactgca
     1021 ttattttcgg cagctcagtg aaaccgtgcg ccaccttctg gtttgtaagg ggtttttacg
     1081 catttcaaac tgcttgccca aaagttaaaa taatagggtc cttcacaaat ccgaagtact
     1141 gtgaacaaat tttatagttt tttaaaatct tctaactaat gctaaaatat aatctaaatt
     1201 tcttactgtt actgcaataa gcattaggaa gtgaatatga tacacttaat agtttataaa
     1261 gatgctatgg tttctataat ttattattca tgacaaatga tatgcaacct taataaatta
     1321 ttataaactt a
//
LOCUS       XM_032618131            6552 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sodium-dependent phosphate transporter
            2-like (LOC116746632), mRNA.
ACCESSION   XM_032618131
VERSION     XM_032618131.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4047              VOSU01000013.1     33698572-33702618   c
            4048-4146           VOSU01000013.1     33697068-33697166   c
            4147-4205           VOSU01000013.1     33696202-33696260   c
            4206-4756           VOSU01000013.1     33645887-33646437   c
            4757-4827           VOSU01000013.1     33640970-33641040   c
            4828-4828           "N"                1-1
            4829-4872           VOSU01000013.1     33640926-33640969   c
            4873-4897           VOSU01000013.1     33640900-33640924   c
            4898-4983           VOSU01000013.1     33639570-33639655   c
            4984-5080           VOSU01000013.1     33636518-33636614   c
            5081-5197           VOSU01000013.1     33626962-33627078   c
            5198-5401           VOSU01000013.1     33621992-33622195   c
            5402-5969           VOSU01000013.1     33620137-33620704   c
            5970-6155           VOSU01000013.1     33611900-33612085   c
            6156-6240           VOSU01000013.1     33610569-33610653   c
            6241-6351           VOSU01000013.1     33599111-33599221   c
            6352-6552           VOSU01000013.1     33598909-33599109   c
FEATURES             Location/Qualifiers
     source          1..6552
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6552
                     /gene="LOC116746632"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746632"
     CDS             4468..6405
                     /gene="LOC116746632"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: sodium-dependent phosphate
                     transporter 2-like"
                     /protein_id="XP_032474022.1"
                     /db_xref="GeneID:116746632"
                     /translation="MAADEYLWMVILGFFIAFILAFSVGANDVANSFGTAVGSGVVTL
                     RQACILASIFETTGSVLLGAKVGETIRKGIIDVNLYNHTAETLMAGEVSAMVGSAVWQ
                     LIASFLRLPISGTHCIVGXTIGFSLVAIGTKGVQWMELVKIVASWFISPLLSGFMSGV
                     LFVLIRKFILKKEDPVPNGLRALPVFYAATIAINVFSIMYTGAPVLGLVLPMWAIVLI
                     SFGVALLFALFVWLCVCPWMRRKIAGKLQKESALSRVSDESLNKIQEAESPVFKELPG
                     ARAHDDSTVPLTGSVAEPSGTSESTTGGHHPRVPYGRALSMTHGAKSPVSNGTFGFDG
                     PARSDGHVYHTVHKDSGLYKDLLHRIRDERTAPDGAPRLLRRNNSYTCYTAAICGLPG
                     LATRRGDAPAPEDSEKLVADAVAYSRRRLRYDSYSSYCNAVAEAEIEAEEGGVEVRLA
                     TPLAEPEPPRDDVADDEKEEKDSAEVHLLFHFLQVLTACFGSFAHGGNDVSNAIGPLV
                     ALWLIYEQGAVLQEAVTPVWLLFYGGVGICTGLWVWGRRVIQTMGKDLTPITPSSGFT
                     IELASAFTVVTASNVGLPVSTTHCKVGSVVAVGWIRSRKAVDWRLFRNIFVAWFVTVP
                     VAGLFSAAVMAVLVYGILPFV"
     misc_feature    4540..>5139
                     /gene="LOC116746632"
                     /note="Phosphate transporter family; Region: PHO4;
                     pfam01384"
                     /db_xref="CDD:460184"
     misc_feature    <5875..6357
                     /gene="LOC116746632"
                     /note="Phosphate transporter family; Region: PHO4;
                     pfam01384"
                     /db_xref="CDD:460184"
ORIGIN      
        1 gggacgggtc ctcccgagag cgcgagcagc ctgcagcccc acctcggcgc gcccgggcgg
       61 cgtctcggcg tgggaggtgg gagtgtgcat tggccccggg tcgagattaa gctggaaaca
      121 cgaagatttt cctctttcgg aatgagggca tagggttatt tttaatattt gcttaggaaa
      181 gcacgtgctg tcactggctt tgtattttcc ctgtcatagt aaatgatgcg tggccgaggc
      241 tattgaagtg ttctaaaaac tggatgtgcc caggatgctg tagtcttgtc agtttaagtg
      301 acttttggat atttaaaatt tttgtaagga cttgcaaaat tctagcatga gacaagtaat
      361 gaatttatgt aagatttcag catgagtatt gacgtaatca gatttcagtg gttggcacag
      421 ccttgcaaac aaatggccac ttgtccacgt gcttgaggtc ttaactattc attttgagcg
      481 agttctctag gatcagctga ctgctgatta taattcatac taggccatgt agaggttgta
      541 tccttaattg ataagcagag attagaggta acgtttaaca tcctacccct tagccagctt
      601 tctctgcttc tttgtggatc attctgttaa aattaaactc acctctgtca ggatgaagag
      661 cattgcttgg tacataacat aaaagcttta tttctagtag taacacatat tcgtttatat
      721 atattatata tacataatca cgtgcataaa tttgtaactg tttagtatga ttacagagtt
      781 ggaaaattag gaacgataat aatgtgcagt gttgagtact gattgcttgc caggcctttg
      841 ccaaatggtc tacatgcttt atctcattta atcttccgga taactttttg cataaacata
      901 gtttgcttag aaatacttga gtacacgagt ttgatttgaa cgtgtccaaa tgcggaatat
      961 gtacattaat tgcttctgtt tctgtttttt gtaaaataag ggtgtgggca atataaaatg
     1021 actcatagag taatttaatg tgtttttcaa gttggaagaa ggctttgcat ttgcacagaa
     1081 ctgcaattag tccctttatt ggggtattca atagtttcca aagccctgtg tctctttatg
     1141 agttcccatt acatgtcatt gtcacccaat gaacaggcta tgcttggatg ttgggaaaaa
     1201 gtaaatgttg ggaaagcctt aatggtccct tctgaaaggt gccctttttc catatatagt
     1261 ttctaagcaa cattcctaat taagggttaa cgaatgacag tcaaacagga acgtgatttt
     1321 ccagtaccaa accaaggaaa taaaaaactg agttggctgt tactttgttg atgagtctaa
     1381 ctttcatggg tatgtagatg ttgagaatgt taactaatct acgttgtagg ggttctacct
     1441 tacttttcag tttgccttta catgtcttaa acatatttga gtccagtact ttgtgcatga
     1501 agaagttaag tttttgactg gatttaattg agtagctttg acttccttaa tcaagaaatt
     1561 tattctgtgt ttccaaaggt acaatgtaat aatttatgta ggcgtaacaa tgacgagaat
     1621 gatggtggga tccagcagtt tgcatcttgg gagagtagga tcgggtgaga ggcctgcaga
     1681 ggatgagcga agtgcttgga aatgtgtcat atttgtgatt agagcgtatt agacttaacg
     1741 catcttcaga tagtggtcca tcatcgcaga agaaaggagt gagaatgctt tgccagttgg
     1801 tatttataag agggttcctt tacctgaagg cgttctcttc tgggaggaga tgaggggacg
     1861 gatgtaggaa gaaaaagatg catgtgttaa cacttccacc catcgtgact aactgattcc
     1921 tgccaacaca tgcatcttca ggcacttttc tagtagatat ttgatatctg tgggcagcca
     1981 ctagtagaag aagggaaaag ggcgggagga gacaaagcac agggctttaa tgaataggct
     2041 ttcatttggg caagattgag cagctgagcc tccgcagcct ctattacgaa aactgttcca
     2101 gtaatactgt gtgtgtctgt aaatctctta tatgttattt gtatccagaa atatggagaa
     2161 tatctcttta atgtgcttca taagcaatgg aagatattta gaatacagta cattaaaagt
     2221 tattaatttc tgtatgtttg ccattgttgg aagcggagtg actgtaatgc cagcattggc
     2281 tcctgttcac gagacattta agggatgttg tgtttcatcg ggttggagga caggcccttc
     2341 ttccttactt cagaacttgg ctctctcgtg gagtgagtgc ccttttaggt cccagggtgc
     2401 aggggccgtt tctgggtccc ttatggccgt attccaagag ccaaggacag aggccggcct
     2461 acagaaggtg tgcagtaaat atatgtggaa tgagcagata tgctggaatc ctctctctgt
     2521 tcccacctgt tgtggaaatc caagtcacct ctaggggcag ggccactgca ggcttgccct
     2581 ctccagagtc ccagctcaca gtgagccctt tgaatggtag ctgtttaaac cacatacttt
     2641 ggcatttaat cttttatgcc tttatattgt tgcatgaccg tttcctgtgt ttcgtttccc
     2701 cacccaaaat acaggctact cgagggcagg gaatacatgt ttacacaggt ctgtgtttga
     2761 gaacttcctt gttcatccag tataataatt tgtaccaagt aggtttattt ttacctattg
     2821 agtgaatatt aggtgccatg gggggaacat cagaaatatt caaaatgtgg tcccagtcct
     2881 cgagtaggta gtatttcagt tgggcaaaca tcgtgtacac acgtggaaca ataagagaat
     2941 ttggagttac ataaagcaaa taatgatagc taacattgat gtactgctta caatgtgctt
     3001 ttacacgtaa acgtattcga ctctcacaac agtcctttga cgtaggtaca gttataatcc
     3061 cacttttcac atgaggaagc tgaggcacag ggagataatt aagtcacctg cccgagacca
     3121 caaagtgagt agtaagcagg gaggtggcat atgaacccag gcagcctggc tcttgaatca
     3181 gtgtgggttc tctggggagt tttactttat caaagacaga aaagagagct aaaagttgac
     3241 cctagtttct cagctgtaaa ggaagctctt taaaaatttc aaagtagcat acatggtggc
     3301 aatgactttg agctgcagaa acaatgctgg attttccagg cagaagaggt tgaaaacaaa
     3361 atggttgagg ggactgtatt ttgaaatgac tgaaggcaag aggagaaaaa ccaaattttg
     3421 aacctcaaag ccgagggaga ctaggactct tggtaggtgt tgaattctag gacagtgatt
     3481 caccaggaca aagggcagtg actgttgaag gtactcattc agtgtcaaat acctcatgtg
     3541 aaagaacccc tagtgaatgt aatttaccag gatgggagca ttactaaagg cttccggtgc
     3601 ccatctgtcc gtttgccttg tccttttgtg aaatcctgac ccactttttc agcttgtctt
     3661 ggacagtaga acacactctt ggggcccgga ggcttcttcc aaccaagtaa tattcatttg
     3721 gtggaaaaaa acttaacggc actgttggtt tggtgacaaa cctggagtga ggtcactttg
     3781 aagccatgtg gacttggatg agggcctgca aacaaaatcc agcaagatga aggaaagtgg
     3841 tttactctga aagcccagtt ttgtatccct ttagtcggga gctgacaata ttattctggg
     3901 ggtgttgggc accaacagag cccactgaat ccacatgact cggccgatag gggagcacac
     3961 acgtcaccat acccgctgtc caggaatcag aggaggaggt gccctggagt gaagcctggg
     4021 ccacagcccc ggttagcagc tctgcaggca tcttaccttg gaaacagcac agcttggctt
     4081 ccgtgtcatc gctgagttca gagaatccta gtttcaccgt gtcctcagta gagaccagag
     4141 aaccagatgg aaatgaagga tgatctctgt gttctgtttt cagttatgta ggagtccaga
     4201 ataaggggga gatctcacag cttccccaga ctgggaagga aaatatggaa tgtgttttac
     4261 cgctgactga acacaaccca atgaactgtc ctgacagtag tttgaaaacc agcagctagc
     4321 agtttgtgca gctccagcat catccggcac tttccagagc agactcattg tttacgagaa
     4381 ctctcggcct gacgacgttt gaacctcaag ctcggcagct ttcaaatact tctgcaaaag
     4441 aaaagtaccc ggaaccccct ttccaaaatg gccgcagatg agtatctgtg gatggtcatc
     4501 ttgggttttt tcatagcttt tattttggcg ttttccgtgg gtgccaatga tgttgccaat
     4561 tcgtttggta ccgccgtggg ctcgggcgtg gtgaccctga ggcaggcctg catcctggct
     4621 tcaatctttg aaaccaccgg ttcggtgtta ctgggggcca aagtcggaga gaccatccgg
     4681 aaaggcatca ttgacgtgaa cctgtacaac cacactgcgg agacgctcat ggccggggag
     4741 gtcagtgcca tggtcggctc tgccgtctgg cagctcattg catccttcct gaggctcccg
     4801 atctcgggga ctcactgcat tgttgggngc accattggat tctccctcgt cgcaattggt
     4861 acaaaaggtg ttcagtggat ggagctggtc aagattgttg cttcttggtt tatatctccg
     4921 ctgttgtctg gtttcatgtc tggcgtgctg tttgtactga tcagaaagtt catcttaaaa
     4981 aaggaggacc ccgttcccaa cggcctccgg gcgcttcccg tgttctatgc cgctaccatc
     5041 gcgatcaatg tgttttccat catgtacaca ggagccccag tgctgggcct ggtccttccc
     5101 atgtgggcga ttgtgctcat ctccttcggg gtcgcgctgc tgttcgccct cttcgtgtgg
     5161 ctctgtgtgt gtccgtggat gcggagaaag atagcaggca aattacaaaa agaaagtgct
     5221 ttatcgcgag tctctgatga aagcctcaac aaaattcagg aagcggagtc tccagtattt
     5281 aaagagctac cgggtgccag ggctcatgac gacagcaccg tccccctcac cgggtcggtc
     5341 gcagagccat ccgggacctc agaaagcacg acagggggac accacccccg cgtaccatac
     5401 ggccgggcgc tgtccatgac acacggcgcc aagtcgcccg tgtctaacgg gaccttcggc
     5461 ttcgacggcc cggcacgcag cgacggccac gtgtatcaca cggtgcacaa ggactcgggt
     5521 ctctacaagg acctgctgca ccgcatccgc gacgagcgga cggcgccgga cggggccccg
     5581 cggctgctgc ggcgcaacaa cagctacacg tgctacacgg cggccatctg cgggctgccc
     5641 ggcctggcca cgcgccgcgg cgacgcgccc gcgcccgagg acagcgagaa gctggtggcc
     5701 gacgccgtgg cttactcccg ccggcggctg cgctacgaca gctactccag ctactgcaac
     5761 gccgtggccg aggccgagat cgaggccgag gagggcggcg tggaggtgcg cctggccacc
     5821 ccgctggccg agcccgagcc gccacgcgat gacgtggcgg acgacgagaa ggaggagaag
     5881 gactcggccg aggtccacct gctcttccac ttcctgcagg tcctcaccgc ctgcttcggc
     5941 tccttcgcgc acggcggcaa cgacgtgagt aatgccattg gtcccctggt agctctgtgg
     6001 ctgatttatg aacaaggtgc cgtcctacaa gaagcagtga ctcccgtctg gctgctgttt
     6061 tacggagggg ttggaatttg tacaggcctc tgggtttggg ggagaagagt gatccagacc
     6121 atggggaagg acctcacccc catcacgccg tccagcggct tcaccatcga gctggcctca
     6181 gcgttcactg tggtcaccgc ctccaacgtc gggctgcccg tcagcaccac gcactgcaag
     6241 gtcggttcgg tggtggccgt gggctggatt cgctcgcgga aggccgtgga ctggcgcctc
     6301 ttccggaaca tctttgtggc ctggttcgtg accgtgcctg tagcagggct gttcagtgct
     6361 gctgtcatgg ctgtgctcgt gtacgggatc cttccgttcg tgtgaccggt cctcttccag
     6421 ccggtaaaca agggatgggc cgggctgcgt gtgggcgctg cgtgctgtct cccgccagcg
     6481 cctccacgac cctctgtgat gttccaaacc acaccgtcca cctaggtgta gagtcgtcct
     6541 ccagagctaa ct
//
LOCUS       XM_032618132            1685 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sodium-dependent phosphate transporter
            2-like (LOC116746634), mRNA.
ACCESSION   XM_032618132
VERSION     XM_032618132.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-335               VOSU01000013.1     33556342-33556676
            336-510             VOSU01000013.1     33557969-33558143
            511-511             "N"                1-1
            512-594             VOSU01000013.1     33558144-33558226
            595-595             "N"                1-1
            596-902             VOSU01000013.1     33558227-33558533
            903-1685            VOSU01000013.1     33566576-33567358
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1685
                     /gene="LOC116746634"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 82% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746634"
     CDS             124..1092
                     /gene="LOC116746634"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: sodium-dependent phosphate
                     transporter 2-like"
                     /protein_id="XP_032474023.1"
                     /db_xref="GeneID:116746634"
                     /translation="MTLFSLGKLQKESALSRVSDESLNKIQEAESPVFKELPGARAHD
                     DSTVPLTGSVAEPSGTSESTTGGHHPARALSMTHGAKSPVSNGTFGFDGPARSDGHVY
                     HTVHKDSGLYKDLLHRIRDERTAPDGAXRLLRRNNSYTCYTAAICGLPGLATRRGXRA
                     RPEDSEKLVADAVAYSRRRLRYDSYSSYCNAVAEAEIEAEEGGVEVRLATPLAEPEPP
                     RDDVADDEKEEKDSAEVHLLFHFLQVLTACFGSFAHGGNDVSNAIGPLVALWLIYEQG
                     AVLQEAVTPVWLLFYGGVGICTGLWVWGRRVIQTMGKDLTPITPSR"
     misc_feature    <808..>1089
                     /gene="LOC116746634"
                     /note="Phosphate transporter family; Region: PHO4;
                     pfam01384"
                     /db_xref="CDD:460184"
ORIGIN      
        1 gaactctcca ctttattttg tctaactttt ttcttcattc ccaaagtaag tatgtaacaa
       61 gataaatatt tatttttata ttcatttgtc agtaacaaga attctctgac aaaattttca
      121 gttatgactc tattttcttt aggcaaatta caaaaagaaa gtgctttatc gcgagtctct
      181 gatgaaagcc tcaacaaaat tcaggaagcg gagtctccag tatttaaaga gctaccgggt
      241 gccagggctc atgacgacag caccgtcccc ctcaccgggt cggtcgcaga gccatccggg
      301 acctcagaaa gcacgacagg gggacaccac cccgcgcggg cgctgtccat gacacacggc
      361 gccaagtcgc ccgtgtctaa cgggaccttc ggcttcgacg gcccggcacg cagcgacggc
      421 cacgtgtatc acacagtgca caaggactcg ggtctctaca aggacctgct gcaccgcatc
      481 cgcgacgagc ggacggcgcc ggacggggcc ncgcggctgc tgcggcgcaa caacagctac
      541 acgtgctaca cggcggccat ctgcgggctg cccggcctgg ccacgcgccg cggcngacgc
      601 gcccggcccg aggacagcga gaagctggtg gccgacgccg tggcttactc ccgccggcgg
      661 ctgcgctacg acagctactc cagctactgc aacgccgtgg ccgaggccga gatcgaggcc
      721 gaggagggcg gcgtggaggt gcgcctggcc accccgctgg ccgagcccga gccgccacgc
      781 gatgacgtgg cggacgacga gaaggaggag aaggactcgg ccgaggtcca cctgctcttc
      841 cacttcctgc aggtcctcac cgcctgcttc ggctccttcg cgcacggcgg caacgacgtg
      901 agtaatgcca ttggtcccct ggtagctctg tggctgattt atgaacaagg tgccgtccta
      961 caagaagcag tgactcccgt ctggctgctg ttttacggag gggttggaat ttgtacaggc
     1021 ctctgggttt gggggagaag agtgatccag accatgggga aggacctcac ccccatcacg
     1081 ccgtccaggt aagccgccgg ggcggcgcgg agtggttgtg tctggacgtc ccagcgcggc
     1141 tctctgcata gccgggtctg cagcggggtc cccgtgtgcc attctcaccc gtcaccctca
     1201 tgcgctgctc agcggtggca cggggtgagg gtgggagtgg gagggatggg aatggaggga
     1261 gaagggaaga gaaaaagcga atccacctgc agccacaccc gcaccccgtt cccctcccac
     1321 actcccactg cccttacccc gcctgaggtc cagagagcag gcggggaggg agagaagggc
     1381 tcttgggcct gcctttcccg aaaatcctct gctcaccagc tccacctgct ggctgcagct
     1441 gtcccctgct gcccttcaag gtttactcca catccttcct ttgcttcctg ggctaagccg
     1501 gcaggagggg tgcccatgcc ccagggtggg gtttggagac tcccacgtgg tttcctatgg
     1561 tccttctagt gtgtatcctc tagagcaggg gttcccaacc cctggtccgc ggaccgacag
     1621 cggtacgtgg cctgttaggg accaggccac acagcaagag gtgagtggca ggcgagggcg
     1681 agcca
//
LOCUS       XM_032618133            1594 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus voltage-dependent anion-selective channel
            protein 3 (LOC116746635), transcript variant X1, mRNA.
ACCESSION   XM_032618133
VERSION     XM_032618133.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1594
                     /gene="LOC116746635"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 36 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746635"
     CDS             304..1155
                     /gene="LOC116746635"
                     /codon_start=1
                     /product="voltage-dependent anion-selective channel
                     protein 3"
                     /protein_id="XP_032474024.1"
                     /db_xref="GeneID:116746635"
                     /translation="MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTS
                     GHAYTDTGKASGNLETKYKICNYGLTFTQKWNTDNTLGTEVSLENKLAEGLKLTLDTI
                     FVPNTGKKSGKLKASYKRDCFSLGSNVDIDFSGPTIYGWAVLAIEGWLAGYQMSFDTA
                     KSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTR
                     FGIAAKYKLDCRTSLCAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVG
                     LGFELAA"
     misc_feature    316..1149
                     /gene="LOC116746635"
                     /note="Voltage-dependent anion channel of the outer
                     mitochondrial membrane; Region: Porin3_VDAC; cd07306"
                     /db_xref="CDD:132767"
     misc_feature    order(349..351,361..363,439..441,484..486,553..555,
                     763..765,1147..1149)
                     /gene="LOC116746635"
                     /note="putative determinants of voltage gating [active]"
                     /db_xref="CDD:132767"
     misc_feature    order(382..384,388..390,1072..1074,1078..1080,1132..1134)
                     /gene="LOC116746635"
                     /note="putative dimerization interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132767"
ORIGIN      
        1 tggacaaagg tgcggtcgcc cggcctgcgc gccccacgtc aacctccgcc cgtccctgcg
       61 cgccgggccc tgccgcgcac gcgcgcactc ggacggttgg agatgtaggt ccgcctcggg
      121 cctgccgcgc gcgaccccgg cgcgacactc cggcgcagcc gcgacgcggg gctcggggcg
      181 cgcaggcgcc gcgggcgtgg ggccgcgcag gcgcggacgg cgttgttctg aagactttct
      241 tcggtgttct ggcggagcgg gcgcgccctc ctggctgagc ggacaggtcc tcccgtcgga
      301 gatatgtgta acacaccgac ttactgtgac ctaggaaagg ctgccaagga tgtcttcaac
      361 aaaggatatg gatttggcat ggtcaaaata gatctgagaa ccaagtcatg tagtggagtg
      421 gaattttcta cttctggtca tgcttacact gatacaggga aagcatcagg caacctagag
      481 accaaataca agatttgtaa ctatggactg accttcaccc aaaagtggaa cacagacaat
      541 actcttggga cagaagtctc tttggagaat aagttggctg aagggttgaa attgactctt
      601 gataccatat ttgtaccgaa cacaggaaag aagagtggga aattgaaggc ctcctataaa
      661 cgggattgtt tcagtcttgg cagtaatgtt gatatagatt tttctggacc aaccatctac
      721 ggctgggctg tgttggccat tgaaggttgg cttgctggct atcagatgag ttttgacaca
      781 gccaaatcca aactgtcaca gaataatttc gccctgggtt acaaggctgc agacttccag
      841 ctgcacactc acgtgaacga tggcactgaa tttggagggt cgatctacca gaaggtgaac
      901 gagaagattg aaacgtcaat aaacctcgcg tggacggctg gcagtaacaa cacccgtttc
      961 ggcatcgccg ctaagtacaa gctggactgt agaacttctc tatgtgctaa agtgaataat
     1021 gccagcctga ttggactggg ttatactcag acccttcgac caggagtgaa actgaccctg
     1081 tcagctctaa tcgatggaaa gaacttcaat gcaggagggc acaaggtcgg gctgggattt
     1141 gaactagcag cttaatgtgg ttttgaataa agcatcagct ttgtccctgg aggtgaagag
     1201 aagtcaaccc actatgtttt ggccttaaaa ttcttctgtg agatttcaaa ggtgtgaact
     1261 ttttattctt ccaaagaatt gtaatcctcc tcacacagaa gcctagatat tgagtccagc
     1321 ctaagggagg tgtgcttgaa gacatgcccg gaagttgtcc tgttcgtgcc acatttcagt
     1381 tcagttccgc agtgttattt tcaatgtgtt gctcaagcga cagtgtagtg tcatgttaca
     1441 aaggagatga cccgaccctc cagttgtcca tcacgtcctg catgtcccac accacttttt
     1501 catgaccttg taatatatcg gtctctgcgg tagtggaatt tttcgttttg catcagagta
     1561 aaataaaata aacccatcac atttggaaca taat
//
LOCUS       XM_032618134            1797 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus voltage-dependent anion-selective channel
            protein 3 (LOC116746635), transcript variant X2, mRNA.
ACCESSION   XM_032618134
VERSION     XM_032618134.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1797
                     /gene="LOC116746635"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 36 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746635"
     CDS             507..1358
                     /gene="LOC116746635"
                     /codon_start=1
                     /product="voltage-dependent anion-selective channel
                     protein 3"
                     /protein_id="XP_032474025.1"
                     /db_xref="GeneID:116746635"
                     /translation="MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTS
                     GHAYTDTGKASGNLETKYKICNYGLTFTQKWNTDNTLGTEVSLENKLAEGLKLTLDTI
                     FVPNTGKKSGKLKASYKRDCFSLGSNVDIDFSGPTIYGWAVLAIEGWLAGYQMSFDTA
                     KSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTR
                     FGIAAKYKLDCRTSLCAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVG
                     LGFELAA"
     misc_feature    519..1352
                     /gene="LOC116746635"
                     /note="Voltage-dependent anion channel of the outer
                     mitochondrial membrane; Region: Porin3_VDAC; cd07306"
                     /db_xref="CDD:132767"
     misc_feature    order(552..554,564..566,642..644,687..689,756..758,
                     966..968,1350..1352)
                     /gene="LOC116746635"
                     /note="putative determinants of voltage gating [active]"
                     /db_xref="CDD:132767"
     misc_feature    order(585..587,591..593,1275..1277,1281..1283,1335..1337)
                     /gene="LOC116746635"
                     /note="putative dimerization interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132767"
ORIGIN      
        1 cgcctaacgg ggcgcgggcc cgcgggcggg gtcggcgggg accggcccct cgggtgatgg
       61 accgccgcgc cgccacctgc ttgcgcccgg ccggtcccca ggactctccg ggcgtcaggc
      121 cggacgggag gttggtttcg agggaagtcg ggtcctcgaa ccccgaaccc acccccgccc
      181 ccggcttcct ccctggcatt ggagtccacc atgagggggg ctcttccact ccctgccgcc
      241 gaggggagga tgctgaatgt gcaccttcaa ggggcgaggc gagctgacgg tcccgttagt
      301 aatcgtgtga agctgggtta taactaaccc gtcaccccca tcccccgact gcggctcctg
      361 caaccccggt gcgctgtgcg tgcccacgga caagtgcatt tgtagtcatg gaaatgtgcg
      421 gaacgtgtcg tctctggggc ttctcgagtt tttgcttgat cataccagca gtgcacttcc
      481 catcaggatc ctgggcctga aaaaatatgt gtaacacacc gacttactgt gacctaggaa
      541 aggctgccaa ggatgtcttc aacaaaggat atggatttgg catggtcaaa atagatctga
      601 gaaccaagtc atgtagtgga gtggaatttt ctacttctgg tcatgcttac actgatacag
      661 ggaaagcatc aggcaaccta gagaccaaat acaagatttg taactatgga ctgaccttca
      721 cccaaaagtg gaacacagac aatactcttg ggacagaagt ctctttggag aataagttgg
      781 ctgaagggtt gaaattgact cttgatacca tatttgtacc gaacacagga aagaagagtg
      841 ggaaattgaa ggcctcctat aaacgggatt gtttcagtct tggcagtaat gttgatatag
      901 atttttctgg accaaccatc tacggctggg ctgtgttggc cattgaaggt tggcttgctg
      961 gctatcagat gagttttgac acagccaaat ccaaactgtc acagaataat ttcgccctgg
     1021 gttacaaggc tgcagacttc cagctgcaca ctcacgtgaa cgatggcact gaatttggag
     1081 ggtcgatcta ccagaaggtg aacgagaaga ttgaaacgtc aataaacctc gcgtggacgg
     1141 ctggcagtaa caacacccgt ttcggcatcg ccgctaagta caagctggac tgtagaactt
     1201 ctctatgtgc taaagtgaat aatgccagcc tgattggact gggttatact cagacccttc
     1261 gaccaggagt gaaactgacc ctgtcagctc taatcgatgg aaagaacttc aatgcaggag
     1321 ggcacaaggt cgggctggga tttgaactag cagcttaatg tggttttgaa taaagcatca
     1381 gctttgtccc tggaggtgaa gagaagtcaa cccactatgt tttggcctta aaattcttct
     1441 gtgagatttc aaaggtgtga actttttatt cttccaaaga attgtaatcc tcctcacaca
     1501 gaagcctaga tattgagtcc agcctaaggg aggtgtgctt gaagacatgc ccggaagttg
     1561 tcctgttcgt gccacatttc agttcagttc cgcagtgtta ttttcaatgt gttgctcaag
     1621 cgacagtgta gtgtcatgtt acaaaggaga tgacccgacc ctccagttgt ccatcacgtc
     1681 ctgcatgtcc cacaccactt tttcatgacc ttgtaatata tcggtctctg cggtagtgga
     1741 atttttcgtt ttgcatcaga gtaaaataaa ataaacccat cacatttgga acataat
//
LOCUS       XM_032618135            2252 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small integral membrane protein 19
            (SMIM19), mRNA.
ACCESSION   XM_032618135
VERSION     XM_032618135.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2252
                     /gene="SMIM19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746636"
     CDS             152..475
                     /gene="SMIM19"
                     /codon_start=1
                     /product="small integral membrane protein 19"
                     /protein_id="XP_032474026.1"
                     /db_xref="GeneID:116746636"
                     /translation="MPGGYGVMGDEDSIDYSVHEAWNEATNVYLVVILVSFGLFMYAK
                     RNKRRIMRIFSVPPPTDTLSEPKFYDTISKIRLRQQLEMYSISRKYDYQQPQSQADSV
                     QLSLE"
     misc_feature    179..472
                     /gene="SMIM19"
                     /note="Uncharacterized protein family UPF0697; Region:
                     UPF0697; pfam15117"
                     /db_xref="CDD:373575"
ORIGIN      
        1 tccggaagcc gccgggccgg caggaaatga cgaagcagag gtcgtccggt ccgtgtggta
       61 accgtctccg cgcgtccggc tgcgactgcc gaggaaagag cgcggagcag agccgccagg
      121 ccgcgtgccg cctgcggagc gagcggctcc catgcctggc ggttacggag tgatgggtga
      181 cgaggactct atcgattaca gcgttcatga ggcctggaac gaagccacca acgtgtacct
      241 ggtagtgatc cttgtcagct ttggactctt catgtatgcc aagagaaata aaaggagaat
      301 tatgaggata ttcagtgtgc cacctccaac agacactctg tcagagccca aattttatga
      361 cacaataagc aaaattcggt taagacagca actggaaatg tactccattt ccagaaagta
      421 tgattatcag cagccacaga gccaggctga cagcgtgcag ctctcattgg aatgaaatct
      481 cagaaaatga gcagcaggaa tgatcgttgt tcaagagtgc agtctccttg cgctgccaaa
      541 tcatgagcag catttttttt aaacttctgt ctccataaaa tcattttatt tgtgactttt
      601 ccccaatttt ttggtgtgtt ttgtttcact tttttaaacc tcatctccaa atcatttgtt
      661 ccacaaatca gaaattcctc aaaaggcctg aacacagaga gtctgcacgt acctaggaag
      721 atagactatc accagagatg gtgactgtac cttgtgaaga ctttgattcc cttcaggata
      781 caatcaggaa ataaaaacac atctttggaa gcgagagtct ggagctgatg ccactttgga
      841 actttcttgc cagcttaaaa aataaaaatc taatcattgg aataacttcc tctccgactg
      901 tgttctgaga taaatataat agggataacg gactaacgta tgttctcatg gctgtcgtta
      961 cctctaaccg aactaaccgt ttttgctacg tcagaatttg cacagtaaac tgtcttttct
     1021 gcgttgtgaa attgtgatgc gcacccccct gctaactgta gaagttttct gtgactggag
     1081 tttgttcccc ttaattgtat tcccaggagt ttcttccacc agaagagtct tctttcggcc
     1141 gtgctggggc tatactgcgg aatacatggg cacctctgac tggtgtcagc ggcttgcttt
     1201 ggggtcatgt gaccatcagt ctttaatgta actgtatggt ttctcaggct tttttagcat
     1261 aataagcttc cctgcagact ctcatatctt gtaccatttt tgtactgtac attgaaatgt
     1321 tttcacccag tttttcagat ttatttaaat aaaagccggt tggggatagt ggcagggaag
     1381 ttcaactgtc catgtaactg tccataaatt cgtttttgaa tcaaaactat aattttaaga
     1441 gttagagtta atatttcaag gattattgcc ttttccttta taattatgaa gtaaagaata
     1501 aaaatgaaaa ggtttagtcc aaataaaatc atttcaggga aattgcattt acttttaaaa
     1561 tttaaatctt ttcaaatata tatatatatt gtacaaggtg aattgttgac caaatggaat
     1621 aattatttct taactcacag atgagtttga acgcaccgcc tgtacgtaga atgaatactc
     1681 ggactgaagg attgtaaaca gttacaatta tggcctgggg atagcagagc agcaagggta
     1741 cagtcttctt aaactttgct ttgctctcat gtaatcagga acgggggcgg tttacctgct
     1801 gtccctgacg tgtggcacaa atctagacaa attacgaaaa ctggctatct cagctgattt
     1861 gtacagtgta cctaaataag catcaatcac aacgaaatag actgtgatgg ttttttattt
     1921 gcatccacta gacagagaca gtcacgacta aaacctcaca gatcatttgg tgagagtgga
     1981 actctggcaa gtgagagagg aagattcctc atttcttctc taaagcccgc tgatgggagt
     2041 cacgcctcca ccagcaggat caacagcaag tccgcctttg aagtttcttc tctgcttcca
     2101 cagctgagct gggaaagcag gggatgccct gcagccacac ttcaaaggga caccagttat
     2161 tgtcctgcct ctgcccctga atccaccaag ggtttgatgg aactattttc tttggaagaa
     2221 aaaaggcatg actaataaac aggtcagtaa ca
//
LOCUS       XR_004347815             597 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746637
            (LOC116746637), ncRNA.
ACCESSION   XR_004347815
VERSION     XR_004347815.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..597
                     /gene="LOC116746637"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746637"
     ncRNA           1..597
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746637"
                     /product="uncharacterized LOC116746637"
                     /db_xref="GeneID:116746637"
ORIGIN      
        1 taggatcttg aaagacttta tttatacttc ctttatttta tctgctttaa ggaatttctc
       61 gtgatgttct gttttgcttt ctgaagtttg acctcctcaa gggtaaggac tgagtcttgc
      121 tcatctctga atccccagtg cattctgact catggtagtt ccatgttggt ggaatgaata
      181 aatgactcat ggtagtggcc gtgtcgttat ctatgtggaa ttccagtaag tcatttcctc
      241 tcgcctctac aatgcattag cagagaacct tccgctccca tggtctcttt tgtccacagt
      301 tacttggaat tggaactcag acagacgtgt caggacaagt gctttggagg aaaagcaaga
      361 cttcatccag tcatcagtag aaagccttgg tggctgcagt ttctgtgact tacaaaaagg
      421 atacatagga gaagagggta ttaacatgat acagctcaca tggtgaagaa gtgaggaaga
      481 agtgaggtct cctgccgtca gcatgtgagg gagccacctt ggaagcagcc cttccagccc
      541 tcggctggag gtgaccccac ctgaaggctg acatactcac tgctgcctcg agagacc
//
LOCUS       XM_032618136            1488 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fibrinogen like 1 (FGL1), transcript
            variant X1, mRNA.
ACCESSION   XM_032618136
VERSION     XM_032618136.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1488
                     /gene="FGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746639"
     CDS             336..1283
                     /gene="FGL1"
                     /codon_start=1
                     /product="fibrinogen-like protein 1"
                     /protein_id="XP_032474027.1"
                     /db_xref="GeneID:116746639"
                     /translation="MGKMTKMISFILLTTVLAMGRESWALENCLHEQARLRAQVHLLE
                     TRVKQQRVKIEQLLHEKEVQFLDKGEENSVIDLGGKRQYADCSEIFNDGYKQSGFYQI
                     KPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRDWNDYENGFGNFVQKNGEYWLG
                     NRNLHLLTTQGDYTLKINLADFEKNSRYAQYRNFKVGDEKNSYDLHIGEYSGTAGDSL
                     AGNFHPEVQWWASHQRMKFSTWDRDNDNYEGNCAKEDQSGWWFNRCHSANLNGLYHTG
                     PYTAKSDNGIVWYTWHGWWYSLKSVVMKIRPNDFIPNIV"
     misc_feature    576..1256
                     /gene="FGL1"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; Region: FReD; cd00087"
                     /db_xref="CDD:238040"
     misc_feature    945..947
                     /gene="FGL1"
                     /note="gamma-gamma dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238040"
     misc_feature    order(1062..1064,1068..1070,1074..1076)
                     /gene="FGL1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238040"
     misc_feature    order(1086..1088,1095..1100,1125..1130)
                     /gene="FGL1"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
ORIGIN      
        1 ggaggagaaa aggccgcgga ctgcggtcgc tttctacccg catcccggtc acgaaggggt
       61 ggaagcaaaa ggacctttac aatctgggct taattttaca cgtgaggaga taaacccacg
      121 cgagttaatt ggccaaacgt cgtacagctg gtcagtggga gaatcatcag tgttagtaat
      181 taactccacc ttggattaac gccctagttt ccgtagaaga accagatgat ttaaatcaaa
      241 atttaacatc gaaaaatgtt ctctaaaact atagtctctg aagtcccttt ttatttactc
      301 tcttttctca gcagcagccc tgttaagttc tttcaatggg aaaaatgacg aagatgatca
      361 gtttcatcct tctcaccact gttctggcaa tgggcaggga aagctgggct ctggagaact
      421 gcctgcacga gcaggcgcgg ctcagagccc aggtgcacct gcttgagacc agggtcaagc
      481 agcaacgagt caagatcgag cagcttttgc atgagaagga agtccagttc cttgataaag
      541 gagaggagaa tagcgtcatt gaccttggag gcaagaggca atacgcagat tgttcagaga
      601 ttttcaatga tgggtataag cagagtggat tttaccaaat caaacctctc cagagcccag
      661 cagaattctc tgtttattgt gacatgtccg atggaggagg gtggactgta attcagagac
      721 gatctgatgg cagtgagaac tttaacagag actggaatga ctatgaaaac ggctttggaa
      781 attttgtcca aaaaaatggt gaatattggc tgggtaatag aaatcttcac ttattgacta
      841 cacaaggaga ctacacatta aaaatcaacc ttgcagattt tgaaaaaaat agccgttacg
      901 cacaatacag aaatttcaaa gttggagatg aaaagaattc ctatgatttg catattgggg
      961 aatattctgg aacagctgga gactccctgg cagggaattt tcatcctgaa gtgcaatggt
     1021 gggccagtca ccaaagaatg aaattcagca catgggacag agataatgac aactacgaag
     1081 ggaactgtgc aaaagaagat cagtctggct ggtggtttaa caggtgtcac tctgcaaacc
     1141 tgaatggttt atatcacact ggcccctaca cggctaaatc agacaatggg atagtctggt
     1201 acacctggca tggatggtgg tattccttga aatctgtggt tatgaaaatt aggccaaatg
     1261 attttattcc aaatattgtt taattgtccc tgctgggctt tcatttctgc agttcatctt
     1321 ggtttaagtg atttgaaaaa tagcaaatct gaaccttcac atgtataatg atggcagttg
     1381 ttatgtgcac tacttttctt acttgccttt atgacttaat gtactttcag tacagcaaat
     1441 atgtgatatt caccaaataa atgtagatta tgttactatt taattgaa
//
LOCUS       XM_032618137            1265 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fibrinogen like 1 (FGL1), transcript
            variant X2, mRNA.
ACCESSION   XM_032618137
VERSION     XM_032618137.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1265
                     /gene="FGL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 13 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746639"
     CDS             113..1060
                     /gene="FGL1"
                     /codon_start=1
                     /product="fibrinogen-like protein 1"
                     /protein_id="XP_032474028.1"
                     /db_xref="GeneID:116746639"
                     /translation="MGKMTKMISFILLTTVLAMGRESWALENCLHEQARLRAQVHLLE
                     TRVKQQRVKIEQLLHEKEVQFLDKGEENSVIDLGGKRQYADCSEIFNDGYKQSGFYQI
                     KPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRDWNDYENGFGNFVQKNGEYWLG
                     NRNLHLLTTQGDYTLKINLADFEKNSRYAQYRNFKVGDEKNSYDLHIGEYSGTAGDSL
                     AGNFHPEVQWWASHQRMKFSTWDRDNDNYEGNCAKEDQSGWWFNRCHSANLNGLYHTG
                     PYTAKSDNGIVWYTWHGWWYSLKSVVMKIRPNDFIPNIV"
     misc_feature    353..1033
                     /gene="FGL1"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; Region: FReD; cd00087"
                     /db_xref="CDD:238040"
     misc_feature    722..724
                     /gene="FGL1"
                     /note="gamma-gamma dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238040"
     misc_feature    order(839..841,845..847,851..853)
                     /gene="FGL1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238040"
     misc_feature    order(863..865,872..877,902..907)
                     /gene="FGL1"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
ORIGIN      
        1 gagaagcaat tacaaagtct gaatgcagtt ggaggagcct gggagacaga gtggctggac
       61 ctcgcctaag ccgtgtctct gactcatttg tgacttcagg caagttcttt caatgggaaa
      121 aatgacgaag atgatcagtt tcatccttct caccactgtt ctggcaatgg gcagggaaag
      181 ctgggctctg gagaactgcc tgcacgagca ggcgcggctc agagcccagg tgcacctgct
      241 tgagaccagg gtcaagcagc aacgagtcaa gatcgagcag cttttgcatg agaaggaagt
      301 ccagttcctt gataaaggag aggagaatag cgtcattgac cttggaggca agaggcaata
      361 cgcagattgt tcagagattt tcaatgatgg gtataagcag agtggatttt accaaatcaa
      421 acctctccag agcccagcag aattctctgt ttattgtgac atgtccgatg gaggagggtg
      481 gactgtaatt cagagacgat ctgatggcag tgagaacttt aacagagact ggaatgacta
      541 tgaaaacggc tttggaaatt ttgtccaaaa aaatggtgaa tattggctgg gtaatagaaa
      601 tcttcactta ttgactacac aaggagacta cacattaaaa atcaaccttg cagattttga
      661 aaaaaatagc cgttacgcac aatacagaaa tttcaaagtt ggagatgaaa agaattccta
      721 tgatttgcat attggggaat attctggaac agctggagac tccctggcag ggaattttca
      781 tcctgaagtg caatggtggg ccagtcacca aagaatgaaa ttcagcacat gggacagaga
      841 taatgacaac tacgaaggga actgtgcaaa agaagatcag tctggctggt ggtttaacag
      901 gtgtcactct gcaaacctga atggtttata tcacactggc ccctacacgg ctaaatcaga
      961 caatgggata gtctggtaca cctggcatgg atggtggtat tccttgaaat ctgtggttat
     1021 gaaaattagg ccaaatgatt ttattccaaa tattgtttaa ttgtccctgc tgggctttca
     1081 tttctgcagt tcatcttggt ttaagtgatt tgaaaaatag caaatctgaa ccttcacatg
     1141 tataatgatg gcagttgtta tgtgcactac ttttcttact tgcctttatg acttaatgta
     1201 ctttcagtac agcaaatatg tgatattcac caaataaatg tagattatgt tactatttaa
     1261 ttgaa
//
LOCUS       XM_032618138            7600 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming acidic coiled-coil
            containing protein 1 (TACC1), transcript variant X1, mRNA.
ACCESSION   XM_032618138
VERSION     XM_032618138.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7600
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7600
                     /gene="TACC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 long SRA reads, 14 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746640"
     CDS             383..2779
                     /gene="TACC1"
                     /codon_start=1
                     /product="transforming acidic coiled-coil-containing
                     protein 1 isoform X1"
                     /protein_id="XP_032474029.1"
                     /db_xref="GeneID:116746640"
                     /translation="MAFSPWQILSPVQWAKWTWSAVRGGVAGEDEAGGPEGDPEEEDS
                     QAETKSLSFSSDSEGNFETPEAETPIRSPCKESCDSHLGLAGPGAKTQDSQEVDEQLV
                     AEVVEKRSPEAGSRPSENEAAQHAAESYSVRGFREEPEHDVSKISVVRPFSVDTKNST
                     APRGPPGPAAGHGCVATALGQAGPCPRAPGDAEDQAMTEGAMGSTLEASAEADPEAGS
                     PCPEPGASRSRLRKPRPVPLRKKAAGGGVSEAHPAPEGARLPRVDRQSGSDGEAGNAA
                     TPALLGGDRSQKCPPDVRETPCAPSGDTSDSGTELPEAVRGSPLKLEFDFTEDVETVE
                     SRKALPRKPGRKLGSRVTPKVQKDGAGEPAGAPGAGASSEPGPCPCPGESPDFGPFGG
                     HSPLQRSPLLSAQGSYGFDPDHFDESMDPFKPAMTLTSSDFGSPAGSHISEILESPKK
                     AKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSG
                     QKPIGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGTEKETCQQMEKDGPAVPAL
                     LESLGEKGPVSVACGGESPLDSICLSESDKTAVLTLIREEIITKEMEANEWKKKYEET
                     RQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLS
                     DLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEE
                     IAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
                     "
     misc_feature    452..>1324
                     /gene="TACC1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    2156..2755
                     /gene="TACC1"
                     /note="Transforming acidic coiled-coil-containing protein
                     (TACC), C-terminal; Region: TACC_C; pfam05010"
                     /db_xref="CDD:461517"
ORIGIN      
        1 gggaggcggg agccgggaga cgggagccgg gccgcaggga ccgggagcag ctgagccgcc
       61 gtgcagccaa ggccgagccg ccgggcgtcg cggacccggg ccccgaggag gccccaggag
      121 aggcatctcc cccgcgggag tcgccgggtg cgggggcgcc gtggccgcac gttcaggaag
      181 gaggacgcgg aggaagcggc gctgccagcc ggaggagagg aagcgctcca cccgggcccc
      241 cgacggcgct cgtttaacca catccgcgcc tccgctggaa acgcgtccgg gcgcctgtca
      301 ccggttccct ccattttgaa agggaaaaag ggctctcccc tttcccatcc tcctaggagc
      361 cggagccgga ggagccgcgc tcatggcgtt cagcccctgg cagatcctgt ccccagtgca
      421 gtgggcgaaa tggacgtggt ccgcggtgcg cggcggggtc gccggagagg acgaggccgg
      481 agggcccgag ggcgaccccg aggaggagga ctcgcaagcc gagaccaaat ccttgagttt
      541 cagctcggat tctgaaggta attttgagac ccctgaagcc gaaacgccca tcagatcacc
      601 ttgcaaggaa tcctgtgatt cacacctagg actggcaggc cctggggcca aaacccaaga
      661 ctcacaagaa gtggacgaac agctggtagc agaagtggtt gaaaaacggt cgcccgaggc
      721 tggttctaga ccctcagaaa acgaagcagc tcagcacgct gctgagtctt actcggtccg
      781 gggtttcaga gaagaacctg aacacgatgt gagcaaaatc tctgtcgtga ggccgttttc
      841 cgtagacacc aagaattcca cggcgccccg ggggccgcct ggcccagcag cgggtcatgg
      901 ctgcgtggcc acggccctag gccaggccgg gccctgcccc cgcgcgccgg gcgacgccga
      961 ggaccaggca atgaccgagg gcgccatggg gtccacgctg gaggcctcgg cggaagccga
     1021 cccggaggcg ggaagcccgt gtccggagcc cggggccagc agaagcaggc tgcggaagcc
     1081 caggcccgtc ccccttagga agaaggcggc aggcggcggg gtctccgaag cccaccccgc
     1141 cccggagggc gcgcgtcttc cccgggtgga ccgccagtcc ggttccgacg gagaggctgg
     1201 gaacgccgcc acccctgccc tgctaggagg tgacaggagc cagaagtgtc cccccgacgt
     1261 gagggagaca ccgtgtgccc ccagcggaga caccagcgac tcagggactg agctgccgga
     1321 ggccgtgagg ggctcccctc tgaaactgga gtttgacttc acggaagacg tggagactgt
     1381 ggagtccagg aaagccctcc cgaggaaacc cggccggaaa ctgggcagca gggtgacacc
     1441 caaggttcag aaagacggcg ccggggagcc agcaggcgcc ccgggggcag gggcgtcctc
     1501 agagccgggt ccctgcccct gtcccgggga gagccccgac ttcgggccct ttgggggcca
     1561 ctccccgctg cagcgctcgc ccctgctctc ggctcagggc tcctacggct ttgacccaga
     1621 tcactttgac gaatccatgg atccctttaa acccgctatg actttaacga gcagtgactt
     1681 tggttctccc gccggtagtc atattagtga aatcttagaa tcacccaaga aggcaaagtc
     1741 gcgtttgata acgagtggct gtaaggtgaa gaaatacgaa gcccagtctc ttgctttgga
     1801 tgggtgttct caggatgaag gagcagtgat ctcccagatt tcagacattt ctaacaggga
     1861 tggccatgct accgacgagg agaagctggc gtctacgtca tctggtcaga aacccattgg
     1921 ggccgagggg aaaggtgagc cagaggacga cctggagtac tttgaatgtt ccaatgttcc
     1981 cgtgtctgcc ataaatcatg cgttttcatc ctcagaagca ggcactgaga aggagacgtg
     2041 ccaacagatg gagaaggatg gacctgccgt gcccgcactg ctggagtccc tgggggagaa
     2101 gggccctgtg tctgtggcct gtggagggga gagcccgctg gacagcatct gcctcagtga
     2161 atcagacaag accgccgtgc tcaccctgat acgagaagag ataatcacta aagagatgga
     2221 agcaaatgaa tggaagaaaa aatacgaaga aacccgacaa gaagtcttgg agatgaggaa
     2281 aattgtggct gagtatgaga agaccattgc ccaaatgatc gaagatgaac agaggacgag
     2341 tatgacctct cagaagagct tccagcagct gaccatggag aaggagcagg ccctggccga
     2401 cctaaactcg gtggaaaggt ccctctccga cctgttcagg agatacgaga acctgaaagg
     2461 cgtcctggaa gggttcaaga agaatgaaga agccttgaaa aaatgtgccc aggattactt
     2521 agccagagtt aaacaagagg agcagcggta ccaggccctg aaaatccacg cggaggaaaa
     2581 actggacaaa gccaatgagg agattgctca ggttcgaaca aaagcaaagg ctgagagcgc
     2641 cgctctccac gcagggctcc ggaaagagca gatgaaggtg gagtccctgg aaagggccct
     2701 tcagcagaag aaccaagaaa ttgaagaact gacaaaaatc tgtgacgagc tgattgcaaa
     2761 gctgggaaag acggactgag tttcccctgt tagctcagca gatctgcatt tggctgcttc
     2821 tctggtgacc atgattatct tgccttatcc aggaataatt gcccctttgc agagaaaaaa
     2881 aaaaaaaaaa ccacggaact ttacaaaagc acatacctac cgctgcctgt cccgctttgc
     2941 tgccgacgca cccgcccggg aggcgccgct ggaggattta ctgcgcagcc cctgaacgag
     3001 tggcctgacg acccgtcggg ctcagtgagt cgggctgccc agtctgggcg ggattctcta
     3061 tctttggttt gttttaaagt catctttact ttccccaggt gcgttcagtg tatgatttta
     3121 tggctactat ttgggaccat atcctgtcca ccacctgtct ggtttttttt taaatttatt
     3181 tcatcgttta catttaattt tcaattttag tggttttatt tgaggagatg atttggccta
     3241 ttgttatttc cagttgagta cccatttata cacacgtgct ctctctcact cacacacacg
     3301 catgcacgca cgcatattta tatatgctgc tgggttttgt tttggttttt ttccctgaag
     3361 cataatcaaa taagaacttc tctacaggag ggcatatttc cataaatgta aaaccctatt
     3421 ttgaaacaga gtcctttctc agaatgccaa cttcagaatt tggggggttg gggaggtgaa
     3481 gcccccagac tccatgtctg gcgtgactca taacctcaga ctcaggtgtc acataaggga
     3541 gactgttggc cgtagtgtcc tgttgccccg tatttcgatg ctcctcagcc tggatgcagg
     3601 cggcccctct ggagttagtc ctcaggccca gggcatctac tttgtgggat ccctcacagc
     3661 tggggttcgg caagtctgtc ctagcgccat cagtctcctc tgcttccatt tgttgctcca
     3721 cgatgacatt tgctctctat tatctctcta tttggaatat gcaaaggaag tctgcttgtc
     3781 aaaggtttag atgatcttat ttaattaacc ccattagcaa tcgtaaggtg aagcaaaagt
     3841 tggatttttc caagtgtgat gcattgttct tcagactttt tttccccaaa ggcaaaaaaa
     3901 aaaaaaaaaa cttgcaaact taaagagagt agaattttca accaaatggg caggaaaaat
     3961 cgtgcaagcc actccaaaaa tcagtgcgtt ttgaatattt ttaaaccaag gccattcgaa
     4021 gactggagga ggggagtgca gggagcagat cccactcaca aaaccaaatt cctcaggccg
     4081 ttcctgggct ccattcagag tggcggggcc cttaaccccc aactggaaat ttcccgtgtg
     4141 aacccctccc acttgatagg cgaaaccaaa tccacacagg tgttttaaag cactgttttg
     4201 tcttaatctg aacaccctga gcgtcttcac ggtgatagac gttatctcca gtacacgtaa
     4261 gttttcgtac ttttcttgta aaactactgc atgacccaac ttcagcaatg aattgtgcct
     4321 cgtggagacc cgctctagct ctttcgagat gactttttct ttagccgtgt actgttcaca
     4381 tggttgcaat ctttagctcc agggaggtca gtattgtctt ttaaagccag aagtcctgtt
     4441 taaccgatat gcatttctca caattggtgc ttaggctgta ttttaaagcc taccgtctta
     4501 acattttgta caaaaaaaac caacaacaac agaaatgatc tgtgtttgga gaagtgatgt
     4561 gacaatcatt tgggccctga aagcagtcac gggtttgacg tgagtgccct gctacaaccc
     4621 tgtccctgga ggagcaggtg tctctaggca gtgtgattgc ggcctcttcc aatcctccac
     4681 gactagagaa actcattttg cgttttgcag aaagaaacgt tgctaaacct ttttgctgct
     4741 gtgttttggt gacatatcca tgtttacctg ttttgtattg ctctgtttga cgcatgaaag
     4801 gcttagtata ggggtctctg ttataaacct acagtcctct cttttaggct tcttgtgtat
     4861 aaaaagagaa agtagctgtg tgttgaaaca gaggcgacga cagtctttcc caagcacact
     4921 ggtgagaaga gacccctaaa aactagaccc tagggagtaa agttgctgca caaggaaaac
     4981 gaaagggtcc ttattcagta atacttgcca ctggcctctc aactatgacc attacaggga
     5041 aatggtcttc cttctaattg aatagatgga ttttctccaa caaaaagaaa catgtagctt
     5101 gtccagctgg cagatcaaga gaatatactg ggcagaatga agtatgtttg tttatttttt
     5161 aaaaaacata agggggagaa agaaacttgt agtaatccgg agagtaagaa tgtggcctag
     5221 aattttgctt caaaacatgg gcggggccaa gttactcgta agctagacag taatactctc
     5281 tgtgacaaac atgaagggaa aatgagagga agccactggc ctggacggtg gtttgggaac
     5341 acgagtggtc ctgttgaggc tctgggtcca gagccacatc ctaagttttt catttttcca
     5401 aagtatagat ggatagtctt tacctaaaag tgttttaatt ggaggatcta ttggaagaca
     5461 gactgcacag tttgtcactt ggttggctag tcatttacag tcagacctcc ccaaatttac
     5521 tttatttgga gacactcctg gaaaccagcg agcggcctgc ccagaccttc tgtgaaaccg
     5581 tcctggaaac accgagaagc ccagttggct tgcgtggctt ctagcatctt cagacctagc
     5641 ccagattagg aagtgtagaa gcacatgatg gtaaaaaact ctgaggacct ggcagccttc
     5701 caaactgata cggagtccaa gggaagattt accttttgtt ctggaggatg gctcaagttg
     5761 aatcttcttt ccagccagtt accttttttt acctgtccca cactttctgc aactctcaca
     5821 caaatactta gatactttag taccgggcct tggattctta ctgactgatt ataagccagc
     5881 agagtaaact gccccagatg tccctgggct gactcagtgc agccagagtg cagcatttta
     5941 ctgaatgtta ctttatgaaa gcatgttact ttcattttac tgaaaggtaa cagaggactt
     6001 gatggctcta aagctcaaaa tggagttgtg atgagcaggc aatggtgagt ctgcgtgcac
     6061 taactggaaa tgattcagca cgtccttttt tagtggagta aaatccctaa agctcccttt
     6121 tgttttccct ttggtttttt gctgcagttg gtagccgtct catgaattgt ccacgaccgg
     6181 tgtctcttct ttgtagattt gtgaccatgc aggcttgctc tcggacttgg gtggtttctt
     6241 actttatcct cttgttggga agagagaaac taggtgtttg aaggattaaa tgattcaagc
     6301 aaagtgtttt agggtaaaga tgtatatatt ctgaagaatt taaaagatag attattatct
     6361 gcttattaaa gaacaaataa cagtctggga atcccagaat gtcaagccaa aagtctatag
     6421 ggtcatcttc ttcaaagatt ttcataaaga agtattttaa ggagacttct gtctataaag
     6481 gtttgactgg cctccagatt ccagtgattt gaagaaagca tcttatcact caaaccttga
     6541 gtctcccatg tagtaaaggc aaaggaatgg tcatgataga tccttctgtc taaggatctc
     6601 ctctggaaga ttgtatgaac aacaatttcc agcgaagacc caccccctag tgcccagagc
     6661 tagcattctg gagactaaag attgcacttt ccatagtttt ttcatccaaa tgcaatccca
     6721 tttctgtgcc tcttagcatg cagttagatt tggacaggca agattcctaa ggaatgactt
     6781 tattaactat aatatggtta cagctactac atatatatat atacacatat atatacacac
     6841 tctcgttata gttgtactat ggagatgtcg cgtgcaatgc tggcctgtga cggtccgtct
     6901 agcgccctga ctcagccggc ggagaccagg cctggtgctg aggtgtggtc tgaaccttcc
     6961 ctgtatccat tcatcacttt agaaccttga agatgccact ttctgtccct ctgcctttta
     7021 gcggcatcgg aaatctgctc cacagagact ctcccagtca cgttgttaac tgatgctctg
     7081 tgaataattt tcaaggggac atataaaaat acgagctcca aaaccagccc ccgacccagt
     7141 gcaggaaggt ctgcagattt cacactcgca gcctcaggct tggtccttgc cacccagtga
     7201 gccaggatcc aggcatttct ttgaaatctc agaggtagca gcaacctttt cagtgtcgct
     7261 tttagcaagt gtgtgtttgc caatagatac ccctgtgtac taacgtgcca acaagtaaat
     7321 gttaattgca catctgcttc cactgtgtcc ccacgggtgc cacaaagtgt gtgaggagcc
     7381 tcgtccagag gaatctaacg ctgcattgac tactgctatc aggattgtgt tgtgtggaat
     7441 aaatcatcta cataaatttt atatgcacaa gtaatttccc ttttatatgt caggtaaata
     7501 tttgtaaaag ttatactcac acaaatgaaa ttattataat gattactaat atattttttc
     7561 catgtttcat tgcctgaata aaaactgttt atcactgtta
//
LOCUS       XM_032618139            7512 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming acidic coiled-coil
            containing protein 1 (TACC1), transcript variant X2, mRNA.
ACCESSION   XM_032618139
VERSION     XM_032618139.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7512
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7512
                     /gene="TACC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 42 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746640"
     CDS             382..2691
                     /gene="TACC1"
                     /codon_start=1
                     /product="transforming acidic coiled-coil-containing
                     protein 1 isoform X2"
                     /protein_id="XP_032474030.1"
                     /db_xref="GeneID:116746640"
                     /translation="MAFSPWQILSPVQWAKWTWSAVRGGVAGEDEAGGPEGDPEEEDS
                     QAETKSLSFSSDSEGNFETPEAETPIRSPCKESCDSHLGLAGPGAKTQDSQEVDEQLV
                     AEVVEKRSPEAGSRPSENEAAQHAAESYSVRGFREEPEHDVSKISVVRPFSVDTKNST
                     APRGPPGPAAGHGCVATALGQAGPCPRAPGDAEDQAMTEGAMGSTLEASAEADPEAGS
                     PCPEPGASRSRLRKPRPVPLRKKAAGGGVSEAHPAPEGARLPRVDRQSGSDGEAGNAA
                     TPALLGGDRSQKCPPDVRETPCAPSGDTSDSGTELPEAVRGSPLKLEFDFTEDVETVE
                     SRKALPRKPGRKLGSRVTPKVQKDGAGEPAGAPGAGASSEPGPCPCPGESPDFGPFGG
                     HSPLQRSPLLSAQGSYGFDPDHFDESMDPFKPAMTLTSSDFGSPAGSHISEILESPKK
                     AKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSG
                     QKPIGAEGKGTEKETCQQMEKDGPAVPALLESLGEKGPVSVACGGESPLDSICLSESD
                     KTAVLTLIREEIITKEMEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTS
                     MTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQD
                     YLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESL
                     ERALQQKNQEIEELTKICDELIAKLGKTD"
     misc_feature    451..>1323
                     /gene="TACC1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    2068..2667
                     /gene="TACC1"
                     /note="Transforming acidic coiled-coil-containing protein
                     (TACC), C-terminal; Region: TACC_C; pfam05010"
                     /db_xref="CDD:461517"
ORIGIN      
        1 ggaggcggga gccgggagac gggagccggg ccgcagggac cgggagcagc tgagccgccg
       61 tgcagccaag gccgagccgc cgggcgtcgc ggacccgggc cccgaggagg ccccaggaga
      121 ggcatctccc ccgcgggagt cgccgggtgc gggggcgccg tggccgcacg ttcaggaagg
      181 aggacgcgga ggaagcggcg ctgccagccg gaggagagga agcgctccac ccgggccccc
      241 gacggcgctc gtttaaccac atccgcgcct ccgctggaaa cgcgtccggg cgcctgtcac
      301 cggttccctc cattttgaaa gggaaaaagg gctctcccct ttcccatcct cctaggagcc
      361 ggagccggag gagccgcgct catggcgttc agcccctggc agatcctgtc cccagtgcag
      421 tgggcgaaat ggacgtggtc cgcggtgcgc ggcggggtcg ccggagagga cgaggccgga
      481 gggcccgagg gcgaccccga ggaggaggac tcgcaagccg agaccaaatc cttgagtttc
      541 agctcggatt ctgaaggtaa ttttgagacc cctgaagccg aaacgcccat cagatcacct
      601 tgcaaggaat cctgtgattc acacctagga ctggcaggcc ctggggccaa aacccaagac
      661 tcacaagaag tggacgaaca gctggtagca gaagtggttg aaaaacggtc gcccgaggct
      721 ggttctagac cctcagaaaa cgaagcagct cagcacgctg ctgagtctta ctcggtccgg
      781 ggtttcagag aagaacctga acacgatgtg agcaaaatct ctgtcgtgag gccgttttcc
      841 gtagacacca agaattccac ggcgccccgg gggccgcctg gcccagcagc gggtcatggc
      901 tgcgtggcca cggccctagg ccaggccggg ccctgccccc gcgcgccggg cgacgccgag
      961 gaccaggcaa tgaccgaggg cgccatgggg tccacgctgg aggcctcggc ggaagccgac
     1021 ccggaggcgg gaagcccgtg tccggagccc ggggccagca gaagcaggct gcggaagccc
     1081 aggcccgtcc cccttaggaa gaaggcggca ggcggcgggg tctccgaagc ccaccccgcc
     1141 ccggagggcg cgcgtcttcc ccgggtggac cgccagtccg gttccgacgg agaggctggg
     1201 aacgccgcca cccctgccct gctaggaggt gacaggagcc agaagtgtcc ccccgacgtg
     1261 agggagacac cgtgtgcccc cagcggagac accagcgact cagggactga gctgccggag
     1321 gccgtgaggg gctcccctct gaaactggag tttgacttca cggaagacgt ggagactgtg
     1381 gagtccagga aagccctccc gaggaaaccc ggccggaaac tgggcagcag ggtgacaccc
     1441 aaggttcaga aagacggcgc cggggagcca gcaggcgccc cgggggcagg ggcgtcctca
     1501 gagccgggtc cctgcccctg tcccggggag agccccgact tcgggccctt tgggggccac
     1561 tccccgctgc agcgctcgcc cctgctctcg gctcagggct cctacggctt tgacccagat
     1621 cactttgacg aatccatgga tccctttaaa cccgctatga ctttaacgag cagtgacttt
     1681 ggttctcccg ccggtagtca tattagtgaa atcttagaat cacccaagaa ggcaaagtcg
     1741 cgtttgataa cgagtggctg taaggtgaag aaatacgaag cccagtctct tgctttggat
     1801 gggtgttctc aggatgaagg agcagtgatc tcccagattt cagacatttc taacagggat
     1861 ggccatgcta ccgacgagga gaagctggcg tctacgtcat ctggtcagaa acccattggg
     1921 gccgagggga aaggcactga gaaggagacg tgccaacaga tggagaagga tggacctgcc
     1981 gtgcccgcac tgctggagtc cctgggggag aagggccctg tgtctgtggc ctgtggaggg
     2041 gagagcccgc tggacagcat ctgcctcagt gaatcagaca agaccgccgt gctcaccctg
     2101 atacgagaag agataatcac taaagagatg gaagcaaatg aatggaagaa aaaatacgaa
     2161 gaaacccgac aagaagtctt ggagatgagg aaaattgtgg ctgagtatga gaagaccatt
     2221 gcccaaatga tcgaagatga acagaggacg agtatgacct ctcagaagag cttccagcag
     2281 ctgaccatgg agaaggagca ggccctggcc gacctaaact cggtggaaag gtccctctcc
     2341 gacctgttca ggagatacga gaacctgaaa ggcgtcctgg aagggttcaa gaagaatgaa
     2401 gaagccttga aaaaatgtgc ccaggattac ttagccagag ttaaacaaga ggagcagcgg
     2461 taccaggccc tgaaaatcca cgcggaggaa aaactggaca aagccaatga ggagattgct
     2521 caggttcgaa caaaagcaaa ggctgagagc gccgctctcc acgcagggct ccggaaagag
     2581 cagatgaagg tggagtccct ggaaagggcc cttcagcaga agaaccaaga aattgaagaa
     2641 ctgacaaaaa tctgtgacga gctgattgca aagctgggaa agacggactg agtttcccct
     2701 gttagctcag cagatctgca tttggctgct tctctggtga ccatgattat cttgccttat
     2761 ccaggaataa ttgccccttt gcagagaaaa aaaaaaaaaa aaccacggaa ctttacaaaa
     2821 gcacatacct accgctgcct gtcccgcttt gctgccgacg cacccgcccg ggaggcgccg
     2881 ctggaggatt tactgcgcag cccctgaacg agtggcctga cgacccgtcg ggctcagtga
     2941 gtcgggctgc ccagtctggg cgggattctc tatctttggt ttgttttaaa gtcatcttta
     3001 ctttccccag gtgcgttcag tgtatgattt tatggctact atttgggacc atatcctgtc
     3061 caccacctgt ctggtttttt tttaaattta tttcatcgtt tacatttaat tttcaatttt
     3121 agtggtttta tttgaggaga tgatttggcc tattgttatt tccagttgag tacccattta
     3181 tacacacgtg ctctctctca ctcacacaca cgcatgcacg cacgcatatt tatatatgct
     3241 gctgggtttt gttttggttt ttttccctga agcataatca aataagaact tctctacagg
     3301 agggcatatt tccataaatg taaaacccta ttttgaaaca gagtcctttc tcagaatgcc
     3361 aacttcagaa tttggggggt tggggaggtg aagcccccag actccatgtc tggcgtgact
     3421 cataacctca gactcaggtg tcacataagg gagactgttg gccgtagtgt cctgttgccc
     3481 cgtatttcga tgctcctcag cctggatgca ggcggcccct ctggagttag tcctcaggcc
     3541 cagggcatct actttgtggg atccctcaca gctggggttc ggcaagtctg tcctagcgcc
     3601 atcagtctcc tctgcttcca tttgttgctc cacgatgaca tttgctctct attatctctc
     3661 tatttggaat atgcaaagga agtctgcttg tcaaaggttt agatgatctt atttaattaa
     3721 ccccattagc aatcgtaagg tgaagcaaaa gttggatttt tccaagtgtg atgcattgtt
     3781 cttcagactt tttttcccca aaggcaaaaa aaaaaaaaaa aacttgcaaa cttaaagaga
     3841 gtagaatttt caaccaaatg ggcaggaaaa atcgtgcaag ccactccaaa aatcagtgcg
     3901 ttttgaatat ttttaaacca aggccattcg aagactggag gaggggagtg cagggagcag
     3961 atcccactca caaaaccaaa ttcctcaggc cgttcctggg ctccattcag agtggcgggg
     4021 cccttaaccc ccaactggaa atttcccgtg tgaacccctc ccacttgata ggcgaaacca
     4081 aatccacaca ggtgttttaa agcactgttt tgtcttaatc tgaacaccct gagcgtcttc
     4141 acggtgatag acgttatctc cagtacacgt aagttttcgt acttttcttg taaaactact
     4201 gcatgaccca acttcagcaa tgaattgtgc ctcgtggaga cccgctctag ctctttcgag
     4261 atgacttttt ctttagccgt gtactgttca catggttgca atctttagct ccagggaggt
     4321 cagtattgtc ttttaaagcc agaagtcctg tttaaccgat atgcatttct cacaattggt
     4381 gcttaggctg tattttaaag cctaccgtct taacattttg tacaaaaaaa accaacaaca
     4441 acagaaatga tctgtgtttg gagaagtgat gtgacaatca tttgggccct gaaagcagtc
     4501 acgggtttga cgtgagtgcc ctgctacaac cctgtccctg gaggagcagg tgtctctagg
     4561 cagtgtgatt gcggcctctt ccaatcctcc acgactagag aaactcattt tgcgttttgc
     4621 agaaagaaac gttgctaaac ctttttgctg ctgtgttttg gtgacatatc catgtttacc
     4681 tgttttgtat tgctctgttt gacgcatgaa aggcttagta taggggtctc tgttataaac
     4741 ctacagtcct ctcttttagg cttcttgtgt ataaaaagag aaagtagctg tgtgttgaaa
     4801 cagaggcgac gacagtcttt cccaagcaca ctggtgagaa gagaccccta aaaactagac
     4861 cctagggagt aaagttgctg cacaaggaaa acgaaagggt ccttattcag taatacttgc
     4921 cactggcctc tcaactatga ccattacagg gaaatggtct tccttctaat tgaatagatg
     4981 gattttctcc aacaaaaaga aacatgtagc ttgtccagct ggcagatcaa gagaatatac
     5041 tgggcagaat gaagtatgtt tgtttatttt ttaaaaaaca taagggggag aaagaaactt
     5101 gtagtaatcc ggagagtaag aatgtggcct agaattttgc ttcaaaacat gggcggggcc
     5161 aagttactcg taagctagac agtaatactc tctgtgacaa acatgaaggg aaaatgagag
     5221 gaagccactg gcctggacgg tggtttggga acacgagtgg tcctgttgag gctctgggtc
     5281 cagagccaca tcctaagttt ttcatttttc caaagtatag atggatagtc tttacctaaa
     5341 agtgttttaa ttggaggatc tattggaaga cagactgcac agtttgtcac ttggttggct
     5401 agtcatttac agtcagacct ccccaaattt actttatttg gagacactcc tggaaaccag
     5461 cgagcggcct gcccagacct tctgtgaaac cgtcctggaa acaccgagaa gcccagttgg
     5521 cttgcgtggc ttctagcatc ttcagaccta gcccagatta ggaagtgtag aagcacatga
     5581 tggtaaaaaa ctctgaggac ctggcagcct tccaaactga tacggagtcc aagggaagat
     5641 ttaccttttg ttctggagga tggctcaagt tgaatcttct ttccagccag ttaccttttt
     5701 ttacctgtcc cacactttct gcaactctca cacaaatact tagatacttt agtaccgggc
     5761 cttggattct tactgactga ttataagcca gcagagtaaa ctgccccaga tgtccctggg
     5821 ctgactcagt gcagccagag tgcagcattt tactgaatgt tactttatga aagcatgtta
     5881 ctttcatttt actgaaaggt aacagaggac ttgatggctc taaagctcaa aatggagttg
     5941 tgatgagcag gcaatggtga gtctgcgtgc actaactgga aatgattcag cacgtccttt
     6001 tttagtggag taaaatccct aaagctccct tttgttttcc ctttggtttt ttgctgcagt
     6061 tggtagccgt ctcatgaatt gtccacgacc ggtgtctctt ctttgtagat ttgtgaccat
     6121 gcaggcttgc tctcggactt gggtggtttc ttactttatc ctcttgttgg gaagagagaa
     6181 actaggtgtt tgaaggatta aatgattcaa gcaaagtgtt ttagggtaaa gatgtatata
     6241 ttctgaagaa tttaaaagat agattattat ctgcttatta aagaacaaat aacagtctgg
     6301 gaatcccaga atgtcaagcc aaaagtctat agggtcatct tcttcaaaga ttttcataaa
     6361 gaagtatttt aaggagactt ctgtctataa aggtttgact ggcctccaga ttccagtgat
     6421 ttgaagaaag catcttatca ctcaaacctt gagtctccca tgtagtaaag gcaaaggaat
     6481 ggtcatgata gatccttctg tctaaggatc tcctctggaa gattgtatga acaacaattt
     6541 ccagcgaaga cccaccccct agtgcccaga gctagcattc tggagactaa agattgcact
     6601 ttccatagtt ttttcatcca aatgcaatcc catttctgtg cctcttagca tgcagttaga
     6661 tttggacagg caagattcct aaggaatgac tttattaact ataatatggt tacagctact
     6721 acatatatat atatacacat atatatacac actctcgtta tagttgtact atggagatgt
     6781 cgcgtgcaat gctggcctgt gacggtccgt ctagcgccct gactcagccg gcggagacca
     6841 ggcctggtgc tgaggtgtgg tctgaacctt ccctgtatcc attcatcact ttagaacctt
     6901 gaagatgcca ctttctgtcc ctctgccttt tagcggcatc ggaaatctgc tccacagaga
     6961 ctctcccagt cacgttgtta actgatgctc tgtgaataat tttcaagggg acatataaaa
     7021 atacgagctc caaaaccagc ccccgaccca gtgcaggaag gtctgcagat ttcacactcg
     7081 cagcctcagg cttggtcctt gccacccagt gagccaggat ccaggcattt ctttgaaatc
     7141 tcagaggtag cagcaacctt ttcagtgtcg cttttagcaa gtgtgtgttt gccaatagat
     7201 acccctgtgt actaacgtgc caacaagtaa atgttaattg cacatctgct tccactgtgt
     7261 ccccacgggt gccacaaagt gtgtgaggag cctcgtccag aggaatctaa cgctgcattg
     7321 actactgcta tcaggattgt gttgtgtgga ataaatcatc tacataaatt ttatatgcac
     7381 aagtaatttc ccttttatat gtcaggtaaa tatttgtaaa agttatactc acacaaatga
     7441 aattattata atgattacta atatattttt tccatgtttc attgcctgaa taaaaactgt
     7501 ttatcactgt ta
//
LOCUS       XM_032618141            7338 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming acidic coiled-coil
            containing protein 1 (TACC1), transcript variant X3, mRNA.
ACCESSION   XM_032618141
VERSION     XM_032618141.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7338
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7338
                     /gene="TACC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746640"
     CDS             709..2517
                     /gene="TACC1"
                     /codon_start=1
                     /product="transforming acidic coiled-coil-containing
                     protein 1 isoform X3"
                     /protein_id="XP_032474032.1"
                     /db_xref="GeneID:116746640"
                     /translation="MTEGAMGSTLEASAEADPEAGSPCPEPGASRSRLRKPRPVPLRK
                     KAAGGGVSEAHPAPEGARLPRVDRQSGSDGEAGNAATPALLGGDRSQKCPPDVRETPC
                     APSGDTSDSGTELPEAVRGSPLKLEFDFTEDVETVESRKALPRKPGRKLGSRVTPKVQ
                     KDGAGEPAGAPGAGASSEPGPCPCPGESPDFGPFGGHSPLQRSPLLSAQGSYGFDPDH
                     FDESMDPFKPAMTLTSSDFGSPAGSHISEILESPKKAKSRLITSGCKVKKYEAQSLAL
                     DGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKPIGAEGKGEPEDDLEYFECS
                     NVPVSAINHAFSSSEAGTEKETCQQMEKDGPAVPALLESLGEKGPVSVACGGESPLDS
                     ICLSESDKTAVLTLIREEIITKEMEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMI
                     EDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEA
                     LKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKE
                     QMKVESLERALQQKNQEIEELTKICDELIAKLGKTD"
     misc_feature    736..>1341
                     /gene="TACC1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    1894..2493
                     /gene="TACC1"
                     /note="Transforming acidic coiled-coil-containing protein
                     (TACC), C-terminal; Region: TACC_C; pfam05010"
                     /db_xref="CDD:461517"
ORIGIN      
        1 gcagccaatt tctccctggg gctcccagcc ctagtggaca tttcctgttc tgcccctgga
       61 cattcaagcc agaacttaca aaacatcctt ttccctcgaa ccaagcgttt ggtttggaga
      121 cccacccttc cccacgtcgg tgatctcagc ccgccctccc cttccttcca cggaacccct
      181 cccagaccag cggcgctcgg cttcctaagc aaagatgatg gatccgctgt agcaggtgac
      241 gccaaaggga gagaggagac ccggggagca ccaccgacga gctcggattc tgaaggtaat
      301 tttgagaccc ctgaagccga aacgcccatc agatcacctt gcaaggaatc ctgtgattca
      361 cacctaggac tggcaggccc tggggccaaa acccaagact cacaagaagt ggacgaacag
      421 ctggtagcag aagtggttga aaaacggtcg cccgaggctg gttctagacc ctcagaaaac
      481 gaagcagctc agcacgctgc tgagtcttac tcggtccggg gtttcagaga agaacctgaa
      541 cacgatgtga gcaaaatctc tgtcgtgagg ccgttttccg tagacaccaa gaattccacg
      601 gcgccccggg ggccgcctgg cccagcagcg ggtcatggct gcgtggccac ggccctaggc
      661 caggccgggc cctgcccccg cgcgccgggc gacgccgagg accaggcaat gaccgagggc
      721 gccatggggt ccacgctgga ggcctcggcg gaagccgacc cggaggcggg aagcccgtgt
      781 ccggagcccg gggccagcag aagcaggctg cggaagccca ggcccgtccc ccttaggaag
      841 aaggcggcag gcggcggggt ctccgaagcc caccccgccc cggagggcgc gcgtcttccc
      901 cgggtggacc gccagtccgg ttccgacgga gaggctggga acgccgccac ccctgccctg
      961 ctaggaggtg acaggagcca gaagtgtccc cccgacgtga gggagacacc gtgtgccccc
     1021 agcggagaca ccagcgactc agggactgag ctgccggagg ccgtgagggg ctcccctctg
     1081 aaactggagt ttgacttcac ggaagacgtg gagactgtgg agtccaggaa agccctcccg
     1141 aggaaacccg gccggaaact gggcagcagg gtgacaccca aggttcagaa agacggcgcc
     1201 ggggagccag caggcgcccc gggggcaggg gcgtcctcag agccgggtcc ctgcccctgt
     1261 cccggggaga gccccgactt cgggcccttt gggggccact ccccgctgca gcgctcgccc
     1321 ctgctctcgg ctcagggctc ctacggcttt gacccagatc actttgacga atccatggat
     1381 ccctttaaac ccgctatgac tttaacgagc agtgactttg gttctcccgc cggtagtcat
     1441 attagtgaaa tcttagaatc acccaagaag gcaaagtcgc gtttgataac gagtggctgt
     1501 aaggtgaaga aatacgaagc ccagtctctt gctttggatg ggtgttctca ggatgaagga
     1561 gcagtgatct cccagatttc agacatttct aacagggatg gccatgctac cgacgaggag
     1621 aagctggcgt ctacgtcatc tggtcagaaa cccattgggg ccgaggggaa aggtgagcca
     1681 gaggacgacc tggagtactt tgaatgttcc aatgttcccg tgtctgccat aaatcatgcg
     1741 ttttcatcct cagaagcagg cactgagaag gagacgtgcc aacagatgga gaaggatgga
     1801 cctgccgtgc ccgcactgct ggagtccctg ggggagaagg gccctgtgtc tgtggcctgt
     1861 ggaggggaga gcccgctgga cagcatctgc ctcagtgaat cagacaagac cgccgtgctc
     1921 accctgatac gagaagagat aatcactaaa gagatggaag caaatgaatg gaagaaaaaa
     1981 tacgaagaaa cccgacaaga agtcttggag atgaggaaaa ttgtggctga gtatgagaag
     2041 accattgccc aaatgatcga agatgaacag aggacgagta tgacctctca gaagagcttc
     2101 cagcagctga ccatggagaa ggagcaggcc ctggccgacc taaactcggt ggaaaggtcc
     2161 ctctccgacc tgttcaggag atacgagaac ctgaaaggcg tcctggaagg gttcaagaag
     2221 aatgaagaag ccttgaaaaa atgtgcccag gattacttag ccagagttaa acaagaggag
     2281 cagcggtacc aggccctgaa aatccacgcg gaggaaaaac tggacaaagc caatgaggag
     2341 attgctcagg ttcgaacaaa agcaaaggct gagagcgccg ctctccacgc agggctccgg
     2401 aaagagcaga tgaaggtgga gtccctggaa agggcccttc agcagaagaa ccaagaaatt
     2461 gaagaactga caaaaatctg tgacgagctg attgcaaagc tgggaaagac ggactgagtt
     2521 tcccctgtta gctcagcaga tctgcatttg gctgcttctc tggtgaccat gattatcttg
     2581 ccttatccag gaataattgc ccctttgcag agaaaaaaaa aaaaaaaacc acggaacttt
     2641 acaaaagcac atacctaccg ctgcctgtcc cgctttgctg ccgacgcacc cgcccgggag
     2701 gcgccgctgg aggatttact gcgcagcccc tgaacgagtg gcctgacgac ccgtcgggct
     2761 cagtgagtcg ggctgcccag tctgggcggg attctctatc tttggtttgt tttaaagtca
     2821 tctttacttt ccccaggtgc gttcagtgta tgattttatg gctactattt gggaccatat
     2881 cctgtccacc acctgtctgg ttttttttta aatttatttc atcgtttaca tttaattttc
     2941 aattttagtg gttttatttg aggagatgat ttggcctatt gttatttcca gttgagtacc
     3001 catttataca cacgtgctct ctctcactca cacacacgca tgcacgcacg catatttata
     3061 tatgctgctg ggttttgttt tggttttttt ccctgaagca taatcaaata agaacttctc
     3121 tacaggaggg catatttcca taaatgtaaa accctatttt gaaacagagt cctttctcag
     3181 aatgccaact tcagaatttg gggggttggg gaggtgaagc ccccagactc catgtctggc
     3241 gtgactcata acctcagact caggtgtcac ataagggaga ctgttggccg tagtgtcctg
     3301 ttgccccgta tttcgatgct cctcagcctg gatgcaggcg gcccctctgg agttagtcct
     3361 caggcccagg gcatctactt tgtgggatcc ctcacagctg gggttcggca agtctgtcct
     3421 agcgccatca gtctcctctg cttccatttg ttgctccacg atgacatttg ctctctatta
     3481 tctctctatt tggaatatgc aaaggaagtc tgcttgtcaa aggtttagat gatcttattt
     3541 aattaacccc attagcaatc gtaaggtgaa gcaaaagttg gatttttcca agtgtgatgc
     3601 attgttcttc agactttttt tccccaaagg caaaaaaaaa aaaaaaaact tgcaaactta
     3661 aagagagtag aattttcaac caaatgggca ggaaaaatcg tgcaagccac tccaaaaatc
     3721 agtgcgtttt gaatattttt aaaccaaggc cattcgaaga ctggaggagg ggagtgcagg
     3781 gagcagatcc cactcacaaa accaaattcc tcaggccgtt cctgggctcc attcagagtg
     3841 gcggggccct taacccccaa ctggaaattt cccgtgtgaa cccctcccac ttgataggcg
     3901 aaaccaaatc cacacaggtg ttttaaagca ctgttttgtc ttaatctgaa caccctgagc
     3961 gtcttcacgg tgatagacgt tatctccagt acacgtaagt tttcgtactt ttcttgtaaa
     4021 actactgcat gacccaactt cagcaatgaa ttgtgcctcg tggagacccg ctctagctct
     4081 ttcgagatga ctttttcttt agccgtgtac tgttcacatg gttgcaatct ttagctccag
     4141 ggaggtcagt attgtctttt aaagccagaa gtcctgttta accgatatgc atttctcaca
     4201 attggtgctt aggctgtatt ttaaagccta ccgtcttaac attttgtaca aaaaaaacca
     4261 acaacaacag aaatgatctg tgtttggaga agtgatgtga caatcatttg ggccctgaaa
     4321 gcagtcacgg gtttgacgtg agtgccctgc tacaaccctg tccctggagg agcaggtgtc
     4381 tctaggcagt gtgattgcgg cctcttccaa tcctccacga ctagagaaac tcattttgcg
     4441 ttttgcagaa agaaacgttg ctaaaccttt ttgctgctgt gttttggtga catatccatg
     4501 tttacctgtt ttgtattgct ctgtttgacg catgaaaggc ttagtatagg ggtctctgtt
     4561 ataaacctac agtcctctct tttaggcttc ttgtgtataa aaagagaaag tagctgtgtg
     4621 ttgaaacaga ggcgacgaca gtctttccca agcacactgg tgagaagaga cccctaaaaa
     4681 ctagacccta gggagtaaag ttgctgcaca aggaaaacga aagggtcctt attcagtaat
     4741 acttgccact ggcctctcaa ctatgaccat tacagggaaa tggtcttcct tctaattgaa
     4801 tagatggatt ttctccaaca aaaagaaaca tgtagcttgt ccagctggca gatcaagaga
     4861 atatactggg cagaatgaag tatgtttgtt tattttttaa aaaacataag ggggagaaag
     4921 aaacttgtag taatccggag agtaagaatg tggcctagaa ttttgcttca aaacatgggc
     4981 ggggccaagt tactcgtaag ctagacagta atactctctg tgacaaacat gaagggaaaa
     5041 tgagaggaag ccactggcct ggacggtggt ttgggaacac gagtggtcct gttgaggctc
     5101 tgggtccaga gccacatcct aagtttttca tttttccaaa gtatagatgg atagtcttta
     5161 cctaaaagtg ttttaattgg aggatctatt ggaagacaga ctgcacagtt tgtcacttgg
     5221 ttggctagtc atttacagtc agacctcccc aaatttactt tatttggaga cactcctgga
     5281 aaccagcgag cggcctgccc agaccttctg tgaaaccgtc ctggaaacac cgagaagccc
     5341 agttggcttg cgtggcttct agcatcttca gacctagccc agattaggaa gtgtagaagc
     5401 acatgatggt aaaaaactct gaggacctgg cagccttcca aactgatacg gagtccaagg
     5461 gaagatttac cttttgttct ggaggatggc tcaagttgaa tcttctttcc agccagttac
     5521 ctttttttac ctgtcccaca ctttctgcaa ctctcacaca aatacttaga tactttagta
     5581 ccgggccttg gattcttact gactgattat aagccagcag agtaaactgc cccagatgtc
     5641 cctgggctga ctcagtgcag ccagagtgca gcattttact gaatgttact ttatgaaagc
     5701 atgttacttt cattttactg aaaggtaaca gaggacttga tggctctaaa gctcaaaatg
     5761 gagttgtgat gagcaggcaa tggtgagtct gcgtgcacta actggaaatg attcagcacg
     5821 tcctttttta gtggagtaaa atccctaaag ctcccttttg ttttcccttt ggttttttgc
     5881 tgcagttggt agccgtctca tgaattgtcc acgaccggtg tctcttcttt gtagatttgt
     5941 gaccatgcag gcttgctctc ggacttgggt ggtttcttac tttatcctct tgttgggaag
     6001 agagaaacta ggtgtttgaa ggattaaatg attcaagcaa agtgttttag ggtaaagatg
     6061 tatatattct gaagaattta aaagatagat tattatctgc ttattaaaga acaaataaca
     6121 gtctgggaat cccagaatgt caagccaaaa gtctataggg tcatcttctt caaagatttt
     6181 cataaagaag tattttaagg agacttctgt ctataaaggt ttgactggcc tccagattcc
     6241 agtgatttga agaaagcatc ttatcactca aaccttgagt ctcccatgta gtaaaggcaa
     6301 aggaatggtc atgatagatc cttctgtcta aggatctcct ctggaagatt gtatgaacaa
     6361 caatttccag cgaagaccca ccccctagtg cccagagcta gcattctgga gactaaagat
     6421 tgcactttcc atagtttttt catccaaatg caatcccatt tctgtgcctc ttagcatgca
     6481 gttagatttg gacaggcaag attcctaagg aatgacttta ttaactataa tatggttaca
     6541 gctactacat atatatatat acacatatat atacacactc tcgttatagt tgtactatgg
     6601 agatgtcgcg tgcaatgctg gcctgtgacg gtccgtctag cgccctgact cagccggcgg
     6661 agaccaggcc tggtgctgag gtgtggtctg aaccttccct gtatccattc atcactttag
     6721 aaccttgaag atgccacttt ctgtccctct gccttttagc ggcatcggaa atctgctcca
     6781 cagagactct cccagtcacg ttgttaactg atgctctgtg aataattttc aaggggacat
     6841 ataaaaatac gagctccaaa accagccccc gacccagtgc aggaaggtct gcagatttca
     6901 cactcgcagc ctcaggcttg gtccttgcca cccagtgagc caggatccag gcatttcttt
     6961 gaaatctcag aggtagcagc aaccttttca gtgtcgcttt tagcaagtgt gtgtttgcca
     7021 atagataccc ctgtgtacta acgtgccaac aagtaaatgt taattgcaca tctgcttcca
     7081 ctgtgtcccc acgggtgcca caaagtgtgt gaggagcctc gtccagagga atctaacgct
     7141 gcattgacta ctgctatcag gattgtgttg tgtggaataa atcatctaca taaattttat
     7201 atgcacaagt aatttccctt ttatatgtca ggtaaatatt tgtaaaagtt atactcacac
     7261 aaatgaaatt attataatga ttactaatat attttttcca tgtttcattg cctgaataaa
     7321 aactgtttat cactgtta
//
LOCUS       XM_032618142            7135 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming acidic coiled-coil
            containing protein 1 (TACC1), transcript variant X4, mRNA.
ACCESSION   XM_032618142
VERSION     XM_032618142.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7135
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7135
                     /gene="TACC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746640"
     CDS             506..2314
                     /gene="TACC1"
                     /codon_start=1
                     /product="transforming acidic coiled-coil-containing
                     protein 1 isoform X3"
                     /protein_id="XP_032474033.1"
                     /db_xref="GeneID:116746640"
                     /translation="MTEGAMGSTLEASAEADPEAGSPCPEPGASRSRLRKPRPVPLRK
                     KAAGGGVSEAHPAPEGARLPRVDRQSGSDGEAGNAATPALLGGDRSQKCPPDVRETPC
                     APSGDTSDSGTELPEAVRGSPLKLEFDFTEDVETVESRKALPRKPGRKLGSRVTPKVQ
                     KDGAGEPAGAPGAGASSEPGPCPCPGESPDFGPFGGHSPLQRSPLLSAQGSYGFDPDH
                     FDESMDPFKPAMTLTSSDFGSPAGSHISEILESPKKAKSRLITSGCKVKKYEAQSLAL
                     DGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKPIGAEGKGEPEDDLEYFECS
                     NVPVSAINHAFSSSEAGTEKETCQQMEKDGPAVPALLESLGEKGPVSVACGGESPLDS
                     ICLSESDKTAVLTLIREEIITKEMEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMI
                     EDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEA
                     LKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKE
                     QMKVESLERALQQKNQEIEELTKICDELIAKLGKTD"
     misc_feature    533..>1138
                     /gene="TACC1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    1691..2290
                     /gene="TACC1"
                     /note="Transforming acidic coiled-coil-containing protein
                     (TACC), C-terminal; Region: TACC_C; pfam05010"
                     /db_xref="CDD:461517"
ORIGIN      
        1 aaaggttctg gtctgggttg ctggcgtgtt tgctcttcag agtcaactgg gaataaattc
       61 aaagacaaat caacaaagct cggattctga aggtaatttt gagacccctg aagccgaaac
      121 gcccatcaga tcaccttgca aggaatcctg tgattcacac ctaggactgg caggccctgg
      181 ggccaaaacc caagactcac aagaagtgga cgaacagctg gtagcagaag tggttgaaaa
      241 acggtcgccc gaggctggtt ctagaccctc agaaaacgaa gcagctcagc acgctgctga
      301 gtcttactcg gtccggggtt tcagagaaga acctgaacac gatgtgagca aaatctctgt
      361 cgtgaggccg ttttccgtag acaccaagaa ttccacggcg ccccgggggc cgcctggccc
      421 agcagcgggt catggctgcg tggccacggc cctaggccag gccgggccct gcccccgcgc
      481 gccgggcgac gccgaggacc aggcaatgac cgagggcgcc atggggtcca cgctggaggc
      541 ctcggcggaa gccgacccgg aggcgggaag cccgtgtccg gagcccgggg ccagcagaag
      601 caggctgcgg aagcccaggc ccgtccccct taggaagaag gcggcaggcg gcggggtctc
      661 cgaagcccac cccgccccgg agggcgcgcg tcttccccgg gtggaccgcc agtccggttc
      721 cgacggagag gctgggaacg ccgccacccc tgccctgcta ggaggtgaca ggagccagaa
      781 gtgtcccccc gacgtgaggg agacaccgtg tgcccccagc ggagacacca gcgactcagg
      841 gactgagctg ccggaggccg tgaggggctc ccctctgaaa ctggagtttg acttcacgga
      901 agacgtggag actgtggagt ccaggaaagc cctcccgagg aaacccggcc ggaaactggg
      961 cagcagggtg acacccaagg ttcagaaaga cggcgccggg gagccagcag gcgccccggg
     1021 ggcaggggcg tcctcagagc cgggtccctg cccctgtccc ggggagagcc ccgacttcgg
     1081 gccctttggg ggccactccc cgctgcagcg ctcgcccctg ctctcggctc agggctccta
     1141 cggctttgac ccagatcact ttgacgaatc catggatccc tttaaacccg ctatgacttt
     1201 aacgagcagt gactttggtt ctcccgccgg tagtcatatt agtgaaatct tagaatcacc
     1261 caagaaggca aagtcgcgtt tgataacgag tggctgtaag gtgaagaaat acgaagccca
     1321 gtctcttgct ttggatgggt gttctcagga tgaaggagca gtgatctccc agatttcaga
     1381 catttctaac agggatggcc atgctaccga cgaggagaag ctggcgtcta cgtcatctgg
     1441 tcagaaaccc attggggccg aggggaaagg tgagccagag gacgacctgg agtactttga
     1501 atgttccaat gttcccgtgt ctgccataaa tcatgcgttt tcatcctcag aagcaggcac
     1561 tgagaaggag acgtgccaac agatggagaa ggatggacct gccgtgcccg cactgctgga
     1621 gtccctgggg gagaagggcc ctgtgtctgt ggcctgtgga ggggagagcc cgctggacag
     1681 catctgcctc agtgaatcag acaagaccgc cgtgctcacc ctgatacgag aagagataat
     1741 cactaaagag atggaagcaa atgaatggaa gaaaaaatac gaagaaaccc gacaagaagt
     1801 cttggagatg aggaaaattg tggctgagta tgagaagacc attgcccaaa tgatcgaaga
     1861 tgaacagagg acgagtatga cctctcagaa gagcttccag cagctgacca tggagaagga
     1921 gcaggccctg gccgacctaa actcggtgga aaggtccctc tccgacctgt tcaggagata
     1981 cgagaacctg aaaggcgtcc tggaagggtt caagaagaat gaagaagcct tgaaaaaatg
     2041 tgcccaggat tacttagcca gagttaaaca agaggagcag cggtaccagg ccctgaaaat
     2101 ccacgcggag gaaaaactgg acaaagccaa tgaggagatt gctcaggttc gaacaaaagc
     2161 aaaggctgag agcgccgctc tccacgcagg gctccggaaa gagcagatga aggtggagtc
     2221 cctggaaagg gcccttcagc agaagaacca agaaattgaa gaactgacaa aaatctgtga
     2281 cgagctgatt gcaaagctgg gaaagacgga ctgagtttcc cctgttagct cagcagatct
     2341 gcatttggct gcttctctgg tgaccatgat tatcttgcct tatccaggaa taattgcccc
     2401 tttgcagaga aaaaaaaaaa aaaaaccacg gaactttaca aaagcacata cctaccgctg
     2461 cctgtcccgc tttgctgccg acgcacccgc ccgggaggcg ccgctggagg atttactgcg
     2521 cagcccctga acgagtggcc tgacgacccg tcgggctcag tgagtcgggc tgcccagtct
     2581 gggcgggatt ctctatcttt ggtttgtttt aaagtcatct ttactttccc caggtgcgtt
     2641 cagtgtatga ttttatggct actatttggg accatatcct gtccaccacc tgtctggttt
     2701 ttttttaaat ttatttcatc gtttacattt aattttcaat tttagtggtt ttatttgagg
     2761 agatgatttg gcctattgtt atttccagtt gagtacccat ttatacacac gtgctctctc
     2821 tcactcacac acacgcatgc acgcacgcat atttatatat gctgctgggt tttgttttgg
     2881 tttttttccc tgaagcataa tcaaataaga acttctctac aggagggcat atttccataa
     2941 atgtaaaacc ctattttgaa acagagtcct ttctcagaat gccaacttca gaatttgggg
     3001 ggttggggag gtgaagcccc cagactccat gtctggcgtg actcataacc tcagactcag
     3061 gtgtcacata agggagactg ttggccgtag tgtcctgttg ccccgtattt cgatgctcct
     3121 cagcctggat gcaggcggcc cctctggagt tagtcctcag gcccagggca tctactttgt
     3181 gggatccctc acagctgggg ttcggcaagt ctgtcctagc gccatcagtc tcctctgctt
     3241 ccatttgttg ctccacgatg acatttgctc tctattatct ctctatttgg aatatgcaaa
     3301 ggaagtctgc ttgtcaaagg tttagatgat cttatttaat taaccccatt agcaatcgta
     3361 aggtgaagca aaagttggat ttttccaagt gtgatgcatt gttcttcaga ctttttttcc
     3421 ccaaaggcaa aaaaaaaaaa aaaaacttgc aaacttaaag agagtagaat tttcaaccaa
     3481 atgggcagga aaaatcgtgc aagccactcc aaaaatcagt gcgttttgaa tatttttaaa
     3541 ccaaggccat tcgaagactg gaggagggga gtgcagggag cagatcccac tcacaaaacc
     3601 aaattcctca ggccgttcct gggctccatt cagagtggcg gggcccttaa cccccaactg
     3661 gaaatttccc gtgtgaaccc ctcccacttg ataggcgaaa ccaaatccac acaggtgttt
     3721 taaagcactg ttttgtctta atctgaacac cctgagcgtc ttcacggtga tagacgttat
     3781 ctccagtaca cgtaagtttt cgtacttttc ttgtaaaact actgcatgac ccaacttcag
     3841 caatgaattg tgcctcgtgg agacccgctc tagctctttc gagatgactt tttctttagc
     3901 cgtgtactgt tcacatggtt gcaatcttta gctccaggga ggtcagtatt gtcttttaaa
     3961 gccagaagtc ctgtttaacc gatatgcatt tctcacaatt ggtgcttagg ctgtatttta
     4021 aagcctaccg tcttaacatt ttgtacaaaa aaaaccaaca acaacagaaa tgatctgtgt
     4081 ttggagaagt gatgtgacaa tcatttgggc cctgaaagca gtcacgggtt tgacgtgagt
     4141 gccctgctac aaccctgtcc ctggaggagc aggtgtctct aggcagtgtg attgcggcct
     4201 cttccaatcc tccacgacta gagaaactca ttttgcgttt tgcagaaaga aacgttgcta
     4261 aacctttttg ctgctgtgtt ttggtgacat atccatgttt acctgttttg tattgctctg
     4321 tttgacgcat gaaaggctta gtataggggt ctctgttata aacctacagt cctctctttt
     4381 aggcttcttg tgtataaaaa gagaaagtag ctgtgtgttg aaacagaggc gacgacagtc
     4441 tttcccaagc acactggtga gaagagaccc ctaaaaacta gaccctaggg agtaaagttg
     4501 ctgcacaagg aaaacgaaag ggtccttatt cagtaatact tgccactggc ctctcaacta
     4561 tgaccattac agggaaatgg tcttccttct aattgaatag atggattttc tccaacaaaa
     4621 agaaacatgt agcttgtcca gctggcagat caagagaata tactgggcag aatgaagtat
     4681 gtttgtttat tttttaaaaa acataagggg gagaaagaaa cttgtagtaa tccggagagt
     4741 aagaatgtgg cctagaattt tgcttcaaaa catgggcggg gccaagttac tcgtaagcta
     4801 gacagtaata ctctctgtga caaacatgaa gggaaaatga gaggaagcca ctggcctgga
     4861 cggtggtttg ggaacacgag tggtcctgtt gaggctctgg gtccagagcc acatcctaag
     4921 tttttcattt ttccaaagta tagatggata gtctttacct aaaagtgttt taattggagg
     4981 atctattgga agacagactg cacagtttgt cacttggttg gctagtcatt tacagtcaga
     5041 cctccccaaa tttactttat ttggagacac tcctggaaac cagcgagcgg cctgcccaga
     5101 ccttctgtga aaccgtcctg gaaacaccga gaagcccagt tggcttgcgt ggcttctagc
     5161 atcttcagac ctagcccaga ttaggaagtg tagaagcaca tgatggtaaa aaactctgag
     5221 gacctggcag ccttccaaac tgatacggag tccaagggaa gatttacctt ttgttctgga
     5281 ggatggctca agttgaatct tctttccagc cagttacctt tttttacctg tcccacactt
     5341 tctgcaactc tcacacaaat acttagatac tttagtaccg ggccttggat tcttactgac
     5401 tgattataag ccagcagagt aaactgcccc agatgtccct gggctgactc agtgcagcca
     5461 gagtgcagca ttttactgaa tgttacttta tgaaagcatg ttactttcat tttactgaaa
     5521 ggtaacagag gacttgatgg ctctaaagct caaaatggag ttgtgatgag caggcaatgg
     5581 tgagtctgcg tgcactaact ggaaatgatt cagcacgtcc ttttttagtg gagtaaaatc
     5641 cctaaagctc ccttttgttt tccctttggt tttttgctgc agttggtagc cgtctcatga
     5701 attgtccacg accggtgtct cttctttgta gatttgtgac catgcaggct tgctctcgga
     5761 cttgggtggt ttcttacttt atcctcttgt tgggaagaga gaaactaggt gtttgaagga
     5821 ttaaatgatt caagcaaagt gttttagggt aaagatgtat atattctgaa gaatttaaaa
     5881 gatagattat tatctgctta ttaaagaaca aataacagtc tgggaatccc agaatgtcaa
     5941 gccaaaagtc tatagggtca tcttcttcaa agattttcat aaagaagtat tttaaggaga
     6001 cttctgtcta taaaggtttg actggcctcc agattccagt gatttgaaga aagcatctta
     6061 tcactcaaac cttgagtctc ccatgtagta aaggcaaagg aatggtcatg atagatcctt
     6121 ctgtctaagg atctcctctg gaagattgta tgaacaacaa tttccagcga agacccaccc
     6181 cctagtgccc agagctagca ttctggagac taaagattgc actttccata gttttttcat
     6241 ccaaatgcaa tcccatttct gtgcctctta gcatgcagtt agatttggac aggcaagatt
     6301 cctaaggaat gactttatta actataatat ggttacagct actacatata tatatataca
     6361 catatatata cacactctcg ttatagttgt actatggaga tgtcgcgtgc aatgctggcc
     6421 tgtgacggtc cgtctagcgc cctgactcag ccggcggaga ccaggcctgg tgctgaggtg
     6481 tggtctgaac cttccctgta tccattcatc actttagaac cttgaagatg ccactttctg
     6541 tccctctgcc ttttagcggc atcggaaatc tgctccacag agactctccc agtcacgttg
     6601 ttaactgatg ctctgtgaat aattttcaag gggacatata aaaatacgag ctccaaaacc
     6661 agcccccgac ccagtgcagg aaggtctgca gatttcacac tcgcagcctc aggcttggtc
     6721 cttgccaccc agtgagccag gatccaggca tttctttgaa atctcagagg tagcagcaac
     6781 cttttcagtg tcgcttttag caagtgtgtg tttgccaata gatacccctg tgtactaacg
     6841 tgccaacaag taaatgttaa ttgcacatct gcttccactg tgtccccacg ggtgccacaa
     6901 agtgtgtgag gagcctcgtc cagaggaatc taacgctgca ttgactactg ctatcaggat
     6961 tgtgttgtgt ggaataaatc atctacataa attttatatg cacaagtaat ttccctttta
     7021 tatgtcaggt aaatatttgt aaaagttata ctcacacaaa tgaaattatt ataatgatta
     7081 ctaatatatt ttttccatgt ttcattgcct gaataaaaac tgtttatcac tgtta
//
LOCUS       XM_032618143            6388 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming acidic coiled-coil
            containing protein 1 (TACC1), transcript variant X5, mRNA.
ACCESSION   XM_032618143
VERSION     XM_032618143.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6388
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6388
                     /gene="TACC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746640"
     CDS             380..1567
                     /gene="TACC1"
                     /codon_start=1
                     /product="transforming acidic coiled-coil-containing
                     protein 1 isoform X4"
                     /protein_id="XP_032474034.1"
                     /db_xref="GeneID:116746640"
                     /translation="MAFSPWQILSPVQWAKWTWSAVRGGVAGEDEAGGPEGDPEEEDS
                     QAETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST
                     SSGQKPIGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGTEKETCQQMEKDGPAV
                     PALLESLGEKGPVSVACGGESPLDSICLSESDKTAVLTLIREEIITKEMEANEWKKKY
                     EETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVER
                     SLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKA
                     NEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLG
                     KTD"
     misc_feature    944..1543
                     /gene="TACC1"
                     /note="Transforming acidic coiled-coil-containing protein
                     (TACC), C-terminal; Region: TACC_C; pfam05010"
                     /db_xref="CDD:461517"
ORIGIN      
        1 aggcgggagc cgggagacgg gagccgggcc gcagggaccg ggagcagctg agccgccgtg
       61 cagccaaggc cgagccgccg ggcgtcgcgg acccgggccc cgaggaggcc ccaggagagg
      121 catctccccc gcgggagtcg ccgggtgcgg gggcgccgtg gccgcacgtt caggaaggag
      181 gacgcggagg aagcggcgct gccagccgga ggagaggaag cgctccaccc gggcccccga
      241 cggcgctcgt ttaaccacat ccgcgcctcc gctggaaacg cgtccgggcg cctgtcaccg
      301 gttccctcca ttttgaaagg gaaaaagggc tctccccttt cccatcctcc taggagccgg
      361 agccggagga gccgcgctca tggcgttcag cccctggcag atcctgtccc cagtgcagtg
      421 ggcgaaatgg acgtggtccg cggtgcgcgg cggggtcgcc ggagaggacg aggccggagg
      481 gcccgagggc gaccccgagg aggaggactc gcaagccgag accaaatcct tgagtttcag
      541 gagtggctgt aaggtgaaga aatacgaagc ccagtctctt gctttggatg ggtgttctca
      601 ggatgaagga gcagtgatct cccagatttc agacatttct aacagggatg gccatgctac
      661 cgacgaggag aagctggcgt ctacgtcatc tggtcagaaa cccattgggg ccgaggggaa
      721 aggtgagcca gaggacgacc tggagtactt tgaatgttcc aatgttcccg tgtctgccat
      781 aaatcatgcg ttttcatcct cagaagcagg cactgagaag gagacgtgcc aacagatgga
      841 gaaggatgga cctgccgtgc ccgcactgct ggagtccctg ggggagaagg gccctgtgtc
      901 tgtggcctgt ggaggggaga gcccgctgga cagcatctgc ctcagtgaat cagacaagac
      961 cgccgtgctc accctgatac gagaagagat aatcactaaa gagatggaag caaatgaatg
     1021 gaagaaaaaa tacgaagaaa cccgacaaga agtcttggag atgaggaaaa ttgtggctga
     1081 gtatgagaag accattgccc aaatgatcga agatgaacag aggacgagta tgacctctca
     1141 gaagagcttc cagcagctga ccatggagaa ggagcaggcc ctggccgacc taaactcggt
     1201 ggaaaggtcc ctctccgacc tgttcaggag atacgagaac ctgaaaggcg tcctggaagg
     1261 gttcaagaag aatgaagaag ccttgaaaaa atgtgcccag gattacttag ccagagttaa
     1321 acaagaggag cagcggtacc aggccctgaa aatccacgcg gaggaaaaac tggacaaagc
     1381 caatgaggag attgctcagg ttcgaacaaa agcaaaggct gagagcgccg ctctccacgc
     1441 agggctccgg aaagagcaga tgaaggtgga gtccctggaa agggcccttc agcagaagaa
     1501 ccaagaaatt gaagaactga caaaaatctg tgacgagctg attgcaaagc tgggaaagac
     1561 ggactgagtt tcccctgtta gctcagcaga tctgcatttg gctgcttctc tggtgaccat
     1621 gattatcttg ccttatccag gaataattgc ccctttgcag agaaaaaaaa aaaaaaaacc
     1681 acggaacttt acaaaagcac atacctaccg ctgcctgtcc cgctttgctg ccgacgcacc
     1741 cgcccgggag gcgccgctgg aggatttact gcgcagcccc tgaacgagtg gcctgacgac
     1801 ccgtcgggct cagtgagtcg ggctgcccag tctgggcggg attctctatc tttggtttgt
     1861 tttaaagtca tctttacttt ccccaggtgc gttcagtgta tgattttatg gctactattt
     1921 gggaccatat cctgtccacc acctgtctgg ttttttttta aatttatttc atcgtttaca
     1981 tttaattttc aattttagtg gttttatttg aggagatgat ttggcctatt gttatttcca
     2041 gttgagtacc catttataca cacgtgctct ctctcactca cacacacgca tgcacgcacg
     2101 catatttata tatgctgctg ggttttgttt tggttttttt ccctgaagca taatcaaata
     2161 agaacttctc tacaggaggg catatttcca taaatgtaaa accctatttt gaaacagagt
     2221 cctttctcag aatgccaact tcagaatttg gggggttggg gaggtgaagc ccccagactc
     2281 catgtctggc gtgactcata acctcagact caggtgtcac ataagggaga ctgttggccg
     2341 tagtgtcctg ttgccccgta tttcgatgct cctcagcctg gatgcaggcg gcccctctgg
     2401 agttagtcct caggcccagg gcatctactt tgtgggatcc ctcacagctg gggttcggca
     2461 agtctgtcct agcgccatca gtctcctctg cttccatttg ttgctccacg atgacatttg
     2521 ctctctatta tctctctatt tggaatatgc aaaggaagtc tgcttgtcaa aggtttagat
     2581 gatcttattt aattaacccc attagcaatc gtaaggtgaa gcaaaagttg gatttttcca
     2641 agtgtgatgc attgttcttc agactttttt tccccaaagg caaaaaaaaa aaaaaaaact
     2701 tgcaaactta aagagagtag aattttcaac caaatgggca ggaaaaatcg tgcaagccac
     2761 tccaaaaatc agtgcgtttt gaatattttt aaaccaaggc cattcgaaga ctggaggagg
     2821 ggagtgcagg gagcagatcc cactcacaaa accaaattcc tcaggccgtt cctgggctcc
     2881 attcagagtg gcggggccct taacccccaa ctggaaattt cccgtgtgaa cccctcccac
     2941 ttgataggcg aaaccaaatc cacacaggtg ttttaaagca ctgttttgtc ttaatctgaa
     3001 caccctgagc gtcttcacgg tgatagacgt tatctccagt acacgtaagt tttcgtactt
     3061 ttcttgtaaa actactgcat gacccaactt cagcaatgaa ttgtgcctcg tggagacccg
     3121 ctctagctct ttcgagatga ctttttcttt agccgtgtac tgttcacatg gttgcaatct
     3181 ttagctccag ggaggtcagt attgtctttt aaagccagaa gtcctgttta accgatatgc
     3241 atttctcaca attggtgctt aggctgtatt ttaaagccta ccgtcttaac attttgtaca
     3301 aaaaaaacca acaacaacag aaatgatctg tgtttggaga agtgatgtga caatcatttg
     3361 ggccctgaaa gcagtcacgg gtttgacgtg agtgccctgc tacaaccctg tccctggagg
     3421 agcaggtgtc tctaggcagt gtgattgcgg cctcttccaa tcctccacga ctagagaaac
     3481 tcattttgcg ttttgcagaa agaaacgttg ctaaaccttt ttgctgctgt gttttggtga
     3541 catatccatg tttacctgtt ttgtattgct ctgtttgacg catgaaaggc ttagtatagg
     3601 ggtctctgtt ataaacctac agtcctctct tttaggcttc ttgtgtataa aaagagaaag
     3661 tagctgtgtg ttgaaacaga ggcgacgaca gtctttccca agcacactgg tgagaagaga
     3721 cccctaaaaa ctagacccta gggagtaaag ttgctgcaca aggaaaacga aagggtcctt
     3781 attcagtaat acttgccact ggcctctcaa ctatgaccat tacagggaaa tggtcttcct
     3841 tctaattgaa tagatggatt ttctccaaca aaaagaaaca tgtagcttgt ccagctggca
     3901 gatcaagaga atatactggg cagaatgaag tatgtttgtt tattttttaa aaaacataag
     3961 ggggagaaag aaacttgtag taatccggag agtaagaatg tggcctagaa ttttgcttca
     4021 aaacatgggc ggggccaagt tactcgtaag ctagacagta atactctctg tgacaaacat
     4081 gaagggaaaa tgagaggaag ccactggcct ggacggtggt ttgggaacac gagtggtcct
     4141 gttgaggctc tgggtccaga gccacatcct aagtttttca tttttccaaa gtatagatgg
     4201 atagtcttta cctaaaagtg ttttaattgg aggatctatt ggaagacaga ctgcacagtt
     4261 tgtcacttgg ttggctagtc atttacagtc agacctcccc aaatttactt tatttggaga
     4321 cactcctgga aaccagcgag cggcctgccc agaccttctg tgaaaccgtc ctggaaacac
     4381 cgagaagccc agttggcttg cgtggcttct agcatcttca gacctagccc agattaggaa
     4441 gtgtagaagc acatgatggt aaaaaactct gaggacctgg cagccttcca aactgatacg
     4501 gagtccaagg gaagatttac cttttgttct ggaggatggc tcaagttgaa tcttctttcc
     4561 agccagttac ctttttttac ctgtcccaca ctttctgcaa ctctcacaca aatacttaga
     4621 tactttagta ccgggccttg gattcttact gactgattat aagccagcag agtaaactgc
     4681 cccagatgtc cctgggctga ctcagtgcag ccagagtgca gcattttact gaatgttact
     4741 ttatgaaagc atgttacttt cattttactg aaaggtaaca gaggacttga tggctctaaa
     4801 gctcaaaatg gagttgtgat gagcaggcaa tggtgagtct gcgtgcacta actggaaatg
     4861 attcagcacg tcctttttta gtggagtaaa atccctaaag ctcccttttg ttttcccttt
     4921 ggttttttgc tgcagttggt agccgtctca tgaattgtcc acgaccggtg tctcttcttt
     4981 gtagatttgt gaccatgcag gcttgctctc ggacttgggt ggtttcttac tttatcctct
     5041 tgttgggaag agagaaacta ggtgtttgaa ggattaaatg attcaagcaa agtgttttag
     5101 ggtaaagatg tatatattct gaagaattta aaagatagat tattatctgc ttattaaaga
     5161 acaaataaca gtctgggaat cccagaatgt caagccaaaa gtctataggg tcatcttctt
     5221 caaagatttt cataaagaag tattttaagg agacttctgt ctataaaggt ttgactggcc
     5281 tccagattcc agtgatttga agaaagcatc ttatcactca aaccttgagt ctcccatgta
     5341 gtaaaggcaa aggaatggtc atgatagatc cttctgtcta aggatctcct ctggaagatt
     5401 gtatgaacaa caatttccag cgaagaccca ccccctagtg cccagagcta gcattctgga
     5461 gactaaagat tgcactttcc atagtttttt catccaaatg caatcccatt tctgtgcctc
     5521 ttagcatgca gttagatttg gacaggcaag attcctaagg aatgacttta ttaactataa
     5581 tatggttaca gctactacat atatatatat acacatatat atacacactc tcgttatagt
     5641 tgtactatgg agatgtcgcg tgcaatgctg gcctgtgacg gtccgtctag cgccctgact
     5701 cagccggcgg agaccaggcc tggtgctgag gtgtggtctg aaccttccct gtatccattc
     5761 atcactttag aaccttgaag atgccacttt ctgtccctct gccttttagc ggcatcggaa
     5821 atctgctcca cagagactct cccagtcacg ttgttaactg atgctctgtg aataattttc
     5881 aaggggacat ataaaaatac gagctccaaa accagccccc gacccagtgc aggaaggtct
     5941 gcagatttca cactcgcagc ctcaggcttg gtccttgcca cccagtgagc caggatccag
     6001 gcatttcttt gaaatctcag aggtagcagc aaccttttca gtgtcgcttt tagcaagtgt
     6061 gtgtttgcca atagataccc ctgtgtacta acgtgccaac aagtaaatgt taattgcaca
     6121 tctgcttcca ctgtgtcccc acgggtgcca caaagtgtgt gaggagcctc gtccagagga
     6181 atctaacgct gcattgacta ctgctatcag gattgtgttg tgtggaataa atcatctaca
     6241 taaattttat atgcacaagt aatttccctt ttatatgtca ggtaaatatt tgtaaaagtt
     6301 atactcacac aaatgaaatt attataatga ttactaatat attttttcca tgtttcattg
     6361 cctgaataaa aactgtttat cactgtta
//
LOCUS       XM_032618144            6298 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transforming acidic coiled-coil
            containing protein 1 (TACC1), transcript variant X6, mRNA.
ACCESSION   XM_032618144
VERSION     XM_032618144.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6298
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6298
                     /gene="TACC1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 37 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746640"
     CDS             377..1477
                     /gene="TACC1"
                     /codon_start=1
                     /product="transforming acidic coiled-coil-containing
                     protein 1 isoform X5"
                     /protein_id="XP_032474035.1"
                     /db_xref="GeneID:116746640"
                     /translation="MAFSPWQILSPVQWAKWTWSAVRGGVAGEDEAGGPEGDPEEEDS
                     QAETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST
                     SSGQKPIGAEGKGTEKETCQQMEKDGPAVPALLESLGEKGPVSVACGGESPLDSICLS
                     ESDKTAVLTLIREEIITKEMEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQ
                     RTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKC
                     AQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKV
                     ESLERALQQKNQEIEELTKICDELIAKLGKTD"
     misc_feature    854..1453
                     /gene="TACC1"
                     /note="Transforming acidic coiled-coil-containing protein
                     (TACC), C-terminal; Region: TACC_C; pfam05010"
                     /db_xref="CDD:461517"
ORIGIN      
        1 cgggagccgg gagacgggag ccgggccgca gggaccggga gcagctgagc cgccgtgcag
       61 ccaaggccga gccgccgggc gtcgcggacc cgggccccga ggaggcccca ggagaggcat
      121 ctcccccgcg ggagtcgccg ggtgcggggg cgccgtggcc gcacgttcag gaaggaggac
      181 gcggaggaag cggcgctgcc agccggagga gaggaagcgc tccacccggg cccccgacgg
      241 cgctcgttta accacatccg cgcctccgct ggaaacgcgt ccgggcgcct gtcaccggtt
      301 ccctccattt tgaaagggaa aaagggctct cccctttccc atcctcctag gagccggagc
      361 cggaggagcc gcgctcatgg cgttcagccc ctggcagatc ctgtccccag tgcagtgggc
      421 gaaatggacg tggtccgcgg tgcgcggcgg ggtcgccgga gaggacgagg ccggagggcc
      481 cgagggcgac cccgaggagg aggactcgca agccgagacc aaatccttga gtttcaggag
      541 tggctgtaag gtgaagaaat acgaagccca gtctcttgct ttggatgggt gttctcagga
      601 tgaaggagca gtgatctccc agatttcaga catttctaac agggatggcc atgctaccga
      661 cgaggagaag ctggcgtcta cgtcatctgg tcagaaaccc attggggccg aggggaaagg
      721 cactgagaag gagacgtgcc aacagatgga gaaggatgga cctgccgtgc ccgcactgct
      781 ggagtccctg ggggagaagg gccctgtgtc tgtggcctgt ggaggggaga gcccgctgga
      841 cagcatctgc ctcagtgaat cagacaagac cgccgtgctc accctgatac gagaagagat
      901 aatcactaaa gagatggaag caaatgaatg gaagaaaaaa tacgaagaaa cccgacaaga
      961 agtcttggag atgaggaaaa ttgtggctga gtatgagaag accattgccc aaatgatcga
     1021 agatgaacag aggacgagta tgacctctca gaagagcttc cagcagctga ccatggagaa
     1081 ggagcaggcc ctggccgacc taaactcggt ggaaaggtcc ctctccgacc tgttcaggag
     1141 atacgagaac ctgaaaggcg tcctggaagg gttcaagaag aatgaagaag ccttgaaaaa
     1201 atgtgcccag gattacttag ccagagttaa acaagaggag cagcggtacc aggccctgaa
     1261 aatccacgcg gaggaaaaac tggacaaagc caatgaggag attgctcagg ttcgaacaaa
     1321 agcaaaggct gagagcgccg ctctccacgc agggctccgg aaagagcaga tgaaggtgga
     1381 gtccctggaa agggcccttc agcagaagaa ccaagaaatt gaagaactga caaaaatctg
     1441 tgacgagctg attgcaaagc tgggaaagac ggactgagtt tcccctgtta gctcagcaga
     1501 tctgcatttg gctgcttctc tggtgaccat gattatcttg ccttatccag gaataattgc
     1561 ccctttgcag agaaaaaaaa aaaaaaaacc acggaacttt acaaaagcac atacctaccg
     1621 ctgcctgtcc cgctttgctg ccgacgcacc cgcccgggag gcgccgctgg aggatttact
     1681 gcgcagcccc tgaacgagtg gcctgacgac ccgtcgggct cagtgagtcg ggctgcccag
     1741 tctgggcggg attctctatc tttggtttgt tttaaagtca tctttacttt ccccaggtgc
     1801 gttcagtgta tgattttatg gctactattt gggaccatat cctgtccacc acctgtctgg
     1861 ttttttttta aatttatttc atcgtttaca tttaattttc aattttagtg gttttatttg
     1921 aggagatgat ttggcctatt gttatttcca gttgagtacc catttataca cacgtgctct
     1981 ctctcactca cacacacgca tgcacgcacg catatttata tatgctgctg ggttttgttt
     2041 tggttttttt ccctgaagca taatcaaata agaacttctc tacaggaggg catatttcca
     2101 taaatgtaaa accctatttt gaaacagagt cctttctcag aatgccaact tcagaatttg
     2161 gggggttggg gaggtgaagc ccccagactc catgtctggc gtgactcata acctcagact
     2221 caggtgtcac ataagggaga ctgttggccg tagtgtcctg ttgccccgta tttcgatgct
     2281 cctcagcctg gatgcaggcg gcccctctgg agttagtcct caggcccagg gcatctactt
     2341 tgtgggatcc ctcacagctg gggttcggca agtctgtcct agcgccatca gtctcctctg
     2401 cttccatttg ttgctccacg atgacatttg ctctctatta tctctctatt tggaatatgc
     2461 aaaggaagtc tgcttgtcaa aggtttagat gatcttattt aattaacccc attagcaatc
     2521 gtaaggtgaa gcaaaagttg gatttttcca agtgtgatgc attgttcttc agactttttt
     2581 tccccaaagg caaaaaaaaa aaaaaaaact tgcaaactta aagagagtag aattttcaac
     2641 caaatgggca ggaaaaatcg tgcaagccac tccaaaaatc agtgcgtttt gaatattttt
     2701 aaaccaaggc cattcgaaga ctggaggagg ggagtgcagg gagcagatcc cactcacaaa
     2761 accaaattcc tcaggccgtt cctgggctcc attcagagtg gcggggccct taacccccaa
     2821 ctggaaattt cccgtgtgaa cccctcccac ttgataggcg aaaccaaatc cacacaggtg
     2881 ttttaaagca ctgttttgtc ttaatctgaa caccctgagc gtcttcacgg tgatagacgt
     2941 tatctccagt acacgtaagt tttcgtactt ttcttgtaaa actactgcat gacccaactt
     3001 cagcaatgaa ttgtgcctcg tggagacccg ctctagctct ttcgagatga ctttttcttt
     3061 agccgtgtac tgttcacatg gttgcaatct ttagctccag ggaggtcagt attgtctttt
     3121 aaagccagaa gtcctgttta accgatatgc atttctcaca attggtgctt aggctgtatt
     3181 ttaaagccta ccgtcttaac attttgtaca aaaaaaacca acaacaacag aaatgatctg
     3241 tgtttggaga agtgatgtga caatcatttg ggccctgaaa gcagtcacgg gtttgacgtg
     3301 agtgccctgc tacaaccctg tccctggagg agcaggtgtc tctaggcagt gtgattgcgg
     3361 cctcttccaa tcctccacga ctagagaaac tcattttgcg ttttgcagaa agaaacgttg
     3421 ctaaaccttt ttgctgctgt gttttggtga catatccatg tttacctgtt ttgtattgct
     3481 ctgtttgacg catgaaaggc ttagtatagg ggtctctgtt ataaacctac agtcctctct
     3541 tttaggcttc ttgtgtataa aaagagaaag tagctgtgtg ttgaaacaga ggcgacgaca
     3601 gtctttccca agcacactgg tgagaagaga cccctaaaaa ctagacccta gggagtaaag
     3661 ttgctgcaca aggaaaacga aagggtcctt attcagtaat acttgccact ggcctctcaa
     3721 ctatgaccat tacagggaaa tggtcttcct tctaattgaa tagatggatt ttctccaaca
     3781 aaaagaaaca tgtagcttgt ccagctggca gatcaagaga atatactggg cagaatgaag
     3841 tatgtttgtt tattttttaa aaaacataag ggggagaaag aaacttgtag taatccggag
     3901 agtaagaatg tggcctagaa ttttgcttca aaacatgggc ggggccaagt tactcgtaag
     3961 ctagacagta atactctctg tgacaaacat gaagggaaaa tgagaggaag ccactggcct
     4021 ggacggtggt ttgggaacac gagtggtcct gttgaggctc tgggtccaga gccacatcct
     4081 aagtttttca tttttccaaa gtatagatgg atagtcttta cctaaaagtg ttttaattgg
     4141 aggatctatt ggaagacaga ctgcacagtt tgtcacttgg ttggctagtc atttacagtc
     4201 agacctcccc aaatttactt tatttggaga cactcctgga aaccagcgag cggcctgccc
     4261 agaccttctg tgaaaccgtc ctggaaacac cgagaagccc agttggcttg cgtggcttct
     4321 agcatcttca gacctagccc agattaggaa gtgtagaagc acatgatggt aaaaaactct
     4381 gaggacctgg cagccttcca aactgatacg gagtccaagg gaagatttac cttttgttct
     4441 ggaggatggc tcaagttgaa tcttctttcc agccagttac ctttttttac ctgtcccaca
     4501 ctttctgcaa ctctcacaca aatacttaga tactttagta ccgggccttg gattcttact
     4561 gactgattat aagccagcag agtaaactgc cccagatgtc cctgggctga ctcagtgcag
     4621 ccagagtgca gcattttact gaatgttact ttatgaaagc atgttacttt cattttactg
     4681 aaaggtaaca gaggacttga tggctctaaa gctcaaaatg gagttgtgat gagcaggcaa
     4741 tggtgagtct gcgtgcacta actggaaatg attcagcacg tcctttttta gtggagtaaa
     4801 atccctaaag ctcccttttg ttttcccttt ggttttttgc tgcagttggt agccgtctca
     4861 tgaattgtcc acgaccggtg tctcttcttt gtagatttgt gaccatgcag gcttgctctc
     4921 ggacttgggt ggtttcttac tttatcctct tgttgggaag agagaaacta ggtgtttgaa
     4981 ggattaaatg attcaagcaa agtgttttag ggtaaagatg tatatattct gaagaattta
     5041 aaagatagat tattatctgc ttattaaaga acaaataaca gtctgggaat cccagaatgt
     5101 caagccaaaa gtctataggg tcatcttctt caaagatttt cataaagaag tattttaagg
     5161 agacttctgt ctataaaggt ttgactggcc tccagattcc agtgatttga agaaagcatc
     5221 ttatcactca aaccttgagt ctcccatgta gtaaaggcaa aggaatggtc atgatagatc
     5281 cttctgtcta aggatctcct ctggaagatt gtatgaacaa caatttccag cgaagaccca
     5341 ccccctagtg cccagagcta gcattctgga gactaaagat tgcactttcc atagtttttt
     5401 catccaaatg caatcccatt tctgtgcctc ttagcatgca gttagatttg gacaggcaag
     5461 attcctaagg aatgacttta ttaactataa tatggttaca gctactacat atatatatat
     5521 acacatatat atacacactc tcgttatagt tgtactatgg agatgtcgcg tgcaatgctg
     5581 gcctgtgacg gtccgtctag cgccctgact cagccggcgg agaccaggcc tggtgctgag
     5641 gtgtggtctg aaccttccct gtatccattc atcactttag aaccttgaag atgccacttt
     5701 ctgtccctct gccttttagc ggcatcggaa atctgctcca cagagactct cccagtcacg
     5761 ttgttaactg atgctctgtg aataattttc aaggggacat ataaaaatac gagctccaaa
     5821 accagccccc gacccagtgc aggaaggtct gcagatttca cactcgcagc ctcaggcttg
     5881 gtccttgcca cccagtgagc caggatccag gcatttcttt gaaatctcag aggtagcagc
     5941 aaccttttca gtgtcgcttt tagcaagtgt gtgtttgcca atagataccc ctgtgtacta
     6001 acgtgccaac aagtaaatgt taattgcaca tctgcttcca ctgtgtcccc acgggtgcca
     6061 caaagtgtgt gaggagcctc gtccagagga atctaacgct gcattgacta ctgctatcag
     6121 gattgtgttg tgtggaataa atcatctaca taaattttat atgcacaagt aatttccctt
     6181 ttatatgtca ggtaaatatt tgtaaaagtt atactcacac aaatgaaatt attataatga
     6241 ttactaatat attttttcca tgtttcattg cctgaataaa aactgtttat cactgtta
//
LOCUS       XM_032618145            5412 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X1, mRNA.
ACCESSION   XM_032618145
VERSION     XM_032618145.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5412
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5412
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             119..4192
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X1"
                     /protein_id="XP_032474036.1"
                     /db_xref="GeneID:116746641"
                     /translation="MDQPGPPAPVREGNRLQAGGGAENEVKYDTNNNEEEEGEQLDLY
                     GVDEAPEADRRAPGAPEARDTGADSPASNTTIPATNTAAGSGHENGTGADTDAVAEPL
                     RPGVPTRVNPYSVIDITPLHEDQPPPPDPEAEGEGGGLHVPSGYSVPVPCGYAVPSGL
                     PLLLPAYSSPALTPAGPAETQEGAEDSQLNSLSPEDPTNSEGPVHKEDSALARWVADP
                     ANTAWMENPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYE
                     EQSDSESRNGVPQSFLRSDHKKQLSHDLTRLKEHYEKKMRHLVANAVGAVEIQQLKHK
                     HELKMQKLVKAAKEGTKDGLEKTKAVVKRGRSFIRTKSFVSADHRPCLEEEQNLFIDV
                     DCKHPEAVLTPMPEGLSQQQVVRRYILGSVVDNEKSYVDALKRILEQYEKPLSEMEPK
                     ILSERKLKTVFYRVKEVLQCHCMFQIALASRVAEWDSVEMIGDVFVASFSKSMLLDAY
                     SEYVNNFSTAVAILKKTCATKPAFLEFLKQCQEASPDRVTLYSLMMKPIQRFPQFILL
                     LQDMLKNTPRGHPDRLPLQMALTELETLAEKLNERKRDADQRCEIKQIAKAVNERYLN
                     KLLSSGSRYLVRSDDVVETVYNDRGEIVKTKERRLFMLNDVLMCATVSARTSHDSSAL
                     TSTGQRYLLKWSVPLGHVEVIEYGGSEGAGENGRGPVVPAPESLAAVAGTKPNRVYVG
                     PGQLYQDLQNLAHDLNVVGQITQLVGNLKGNYQNLNQSVAHDWTSGLQRLILKKEEEI
                     RAADCCRIQLQLPGKQDKSGRPTFFTAVFNTFTAAIKESWINNLQMAKLALEEENHLG
                     WFYVEDDGNQIKKERHPLLVGHMPVTVAKQQEFKIECAVYNPEPYLNNENQPDSFSTA
                     HGFLWIGSCTSQMGQIAIVSFQNSSPKVIECFNVESRVLCMVYVPAEDRPREPESTGG
                     RVLGIPTVCLGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTPQSLYAGLVN
                     GAVAIYARADDGSWNSEPQTVIQLGVLPVRSLLMMEDTLWAASGGQVSVISVETHAVE
                     SQLEAHQEEGMVVSHMAIAGVGIWIAFTSGSTLRLFHTETLKHLQDVNVATPVHHMLP
                     GHQRLSVTSLLVCHGLLMVGTSLGVVVALPVPRLQGIPKVTGRGLVSYHAHNGPVKFL
                     VVATAASKADRDKPRDSPPPGADPQDEDQRDPLPGEGPGPCLSRSSPDAVWLGASLGS
                     LAQASDVSSTSGSPTPSQGSGSLGPRSEESFIQDPLRLPCSSPGRGRRARKAKASSVL
                     VACGGQGHRRVSRKARQQRPEELASSVMVWQIPLLNV"
     misc_feature    1361..1915
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1379..1381,1391..1393,1685..1687,1766..1771,
                     1778..1783,1787..1792,1799..1804,1811..1816,1823..1825,
                     1901..1903,1913..1915)
                     /gene="ARHGEF10"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1982..2437
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    2759..4186
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 ccggggccgc ggacaagagg aggggagagg tgtcctcgga gggacggagg gtcggggttc
       61 tgtcctggct gcagggtccc agatcctccg agcccaggag cgaggtggac gcggcagcat
      121 ggaccagccg ggcccgccgg ctcccgtccg ggaaggtaac aggttgcagg ccggtggcgg
      181 ggcagagaat gaagtcaagt acgacactaa caacaatgag gaagaggagg gggaacagct
      241 ggatctctac ggcgtagatg aagctccaga agcagacaga cgggctccgg gtgcccccga
      301 ggccagggac acgggagcag acagccccgc ctccaacacc accatccccg ccaccaacac
      361 cgcggccgga tcaggacatg aaaatggcac gggagcggac acagacgccg tggcggaacc
      421 actgagaccc ggggtcccga cgagagtcaa cccctactcc gtcatcgaca tcacacccct
      481 ccatgaggac cagccgccgc ctccggaccc ggaggccgag ggggagggcg ggggcctgca
      541 tgtgcccagc gggtactcgg tacctgtgcc ctgcggctac gccgtgccct ccggcctgcc
      601 cctgctgctg cctgcctact ccagccctgc cctcaccccc gcgggccccg cagagacaca
      661 ggaaggagca gaagacagcc agttgaattc cttgagtcct gaggatccaa caaacagtga
      721 aggtccagtc cataaggagg acagcgccct cgcccggtgg gttgcagatc cggccaatac
      781 agcctggatg gaaaatccgg aagaagccat ttatgatgac gtgccaagag aaaattcaga
      841 ctctgagcca gatgaaatga tttatgatga tgttgagaat ggagatgaag gtggaaacag
      901 ctctctggag tacgggtgga gttcgagcga atttgagagc tacgaggaac agagcgactc
      961 ggagagcaga aacggggtcc cccagtcctt cctgcgcagc gaccacaaaa agcaactttc
     1021 ccatgaccta acccgcttaa aggagcacta tgagaaaaag atgagacatt tggtggcaaa
     1081 cgcggtgggc gcggtagaga ttcagcagct aaagcacaaa catgaactga agatgcagaa
     1141 gctcgtgaag gccgccaagg agggcaccaa ggatggcctg gagaagacga aggctgtggt
     1201 gaagcggggc cgctccttca tcaggaccaa gtccttcgtc tctgcagacc acagaccctg
     1261 tcttgaagag gaacagaact tgttcatcga cgtggactgc aagcatccgg aagctgtcct
     1321 caccccaatg cccgaaggct tgtctcagca gcaggtcgta agaagatata ttctgggttc
     1381 ggttgtcgac aatgaaaaga gctacgtgga tgctcttaag aggattttgg agcaatacga
     1441 gaagccgctg tctgagatgg agcccaagat cctgagcgag aggaagctga agacggtctt
     1501 ctaccgggtc aaggaggtcc tgcagtgcca ctgcatgttc cagattgcgc tggccagccg
     1561 cgtggccgag tgggactcgg tggagatgat cggagacgtc ttcgtggcct cgttttctaa
     1621 gtccatgctg ctggatgctt acagcgaata tgtgaataat tttagcacag ctgtggcaat
     1681 ccttaagaaa acgtgcgcta caaaacctgc ttttcttgaa tttttaaagc agtgccagga
     1741 ggccagccct gaccgcgtca cgctgtacag cctgatgatg aagcccatcc agaggttccc
     1801 gcagttcatc ctgctgctcc aggacatgct gaagaacacg ccccgaggac accccgacag
     1861 gctacccctc cagatggcgc tgacggagct cgagacactg gcggagaaat taaacgagag
     1921 gaagagggac gctgatcaac gctgcgaaat caaacagata gcaaaagccg taaacgagcg
     1981 gtacctgaac aagcttctca gcagcgggag tcgctacctc gtccgctccg acgacgtggt
     2041 agaaactgtc tacaacgacc ggggggagat cgtgaaaacc aaggagcgcc ggctcttcat
     2101 gctgaatgac gtgctcatgt gcgccacggt cagcgcccgc acctcccatg acagcagtgc
     2161 cctgacatcg accggccaga ggtatttgtt gaagtggagc gtccctctcg ggcacgtgga
     2221 agtgatagaa tacggcggca gcgagggcgc gggggagaat ggcaggggtc ccgtggtgcc
     2281 cgcgcccgag agcctggcag cggtggccgg caccaagcca aacagagttt acgtggggcc
     2341 ggggcagctg tatcaagatt tacaaaattt ggcgcatgac ttaaatgtcg tcggtcaaat
     2401 cactcaactg gttggaaacc tcaaaggaaa ctatcagaat ttgaaccagt cggtagccca
     2461 cgactggacc tcgggtttac agaggcttat tctgaagaag gaagaggaga tcagagcggc
     2521 cgactgctgt cggatccagt tacagctccc ggggaaacag gacaagtccg gccggccgac
     2581 tttcttcact gctgtgttca ataccttcac cgccgccatc aaggagtcct ggatcaacaa
     2641 cctgcagatg gccaagctcg ccctcgagga agagaaccac ctgggctggt tctacgtgga
     2701 ggacgacggg aatcagatca agaaggagag gcaccccctc ctcgtgggac acatgcctgt
     2761 gacggtggcc aagcagcagg agttcaagat cgaatgtgcc gtttataatc ctgagcctta
     2821 cctaaataat gagaatcagc cagactcgtt ttccacggct catggtttcc tgtggatcgg
     2881 aagctgcacc agtcagatgg gtcagatagc catcgtctcc tttcaaaact ccagccccaa
     2941 ggtcatcgag tgcttcaacg tggagtcccg cgtcctgtgc atggtgtacg tgcccgcaga
     3001 ggacaggccc cgggagcccg agagcacggg gggccgagtg ctgggcatcc ccaccgtctg
     3061 cctggggacg gaggagggga gcatttccat ttataaaagc agccaaggct ccaagaaggt
     3121 gcggctccag cacttcttca ctcccgagaa atccacggtc atgagcttgg cctgcacgcc
     3181 gcagagcctg tacgccggcc tggtcaacgg ggccgtggcc atctacgcca gagcggacga
     3241 tggatcctgg aattccgaac ctcaaacagt gatacaatta ggcgtcctcc cagttcgaag
     3301 tctgctaatg atggaagaca cactgtgggc ggcgtctgga ggtcaagtgt ctgtaatcag
     3361 tgtggagact cacgccgtgg agagccagct ggaggcccac caggaggagg gcatggtggt
     3421 ctcacacatg gccattgccg gtgtgggcat ctggatcgcc ttcacctcag ggtccacgct
     3481 ccgcctcttc cacacggaga cgctcaaaca tctccaggac gtcaacgtcg ccaccccggt
     3541 ccaccacatg ctgccaggac accagcggct gtctgtgacc agcctgctcg tctgccacgg
     3601 cttgctgatg gtcggcacca gcctgggcgt cgtggtggcc ctgcccgtcc ctcgtctgca
     3661 ggggatcccc aaggtgactg gtcgaggcct ggtctcctac catgctcaca acgggcccgt
     3721 caagttcctg gtcgtggcca cagccgcctc caaggcggac agagacaagc ccagggacag
     3781 cccgcccccc ggtgccgacc cccaggatga agaccagagg gacccgctcc ccggtgaggg
     3841 gcccgggccc tgcctgagcc gcagcagtcc tgacgccgtc tggctggggg cttcgctggg
     3901 ctccctcgcc caggccagcg acgtctcctc cacgtctggg tccccgacgc cttcccaggg
     3961 ctcgggctcc ctggggcccc gctcagagga gagtttcatc caggaccccc tgcggctccc
     4021 ctgcagctcc cccggccgag ggcggcgggc caggaaggcc aaggccagct ccgtgctggt
     4081 ggcctgtggg ggacagggcc accggcgggt gagcaggaag gccaggcagc agcggccgga
     4141 ggagttggcc tcgtccgtca tggtctggca gatccccctg ctgaatgtgt gagccagggt
     4201 cgagattcgg gggtggcctt tcagccaagt cacacacccc gagcggtccc gccgcatcta
     4261 tactgactgg gtgtgaatcg ccagccgtct cggggccgaa aagtgcaata tcgtcacggg
     4321 ggcatctccg gcagcccctc cctccacccc aggcagggga gccccgtgtg aacgcgcatg
     4381 aggaaggggg tggacgccgt gttcgagtgg gtgggggtcc cgggaggatg ctccccctct
     4441 gacccccgtg gtccttaata aacacgggac gctgcagacc tgttctcgta gcctgtcacc
     4501 tagagaactc acagactcag aactcacggg gaaatacagc gtattcactg gtggaggggt
     4561 ttattaacaa ttcttaaagt aattgtcctt gattcagatt cactactttt atttatgttg
     4621 tatatctttt aactccagaa tagaatttgt aacaatgaag aaagccacgt aacacatacc
     4681 aggccgggtg gtgttatgtg ctatctgagt tgaactgagt tttccaaagt ggtataacac
     4741 gtgtactgta tatttttaac aaagtagtat ttttatatcg catttttcta ttaaaaaaaa
     4801 ttaacaaagt tttagtcact atgttatccg taacgtttca caaataacgt ttgctttgaa
     4861 ccaaaatcct caacgcctgt caacatttag actcaagcgt caatgccaaa atacccacgt
     4921 tggagatgtg tgtgttttag tgtctcagga gacgtagaag gtgtcttggt ccatcctttc
     4981 ctgctgtgtt tgcatctgtc gaccaggagc gcttctagct ttgaatgcat gtcctgaagg
     5041 atgcacggtg ctggtcaggg cgggcgccgg tgctggcggc ggacacagga cacaggaaag
     5101 gtggcccttg gtcggcagac tggcacttag ggccccttct gcgggcgtca tgcacgagtg
     5161 gtccgtgagt tcgctgtgct ccacgtgtcg ttatctatca atgttctact tactggatgg
     5221 ttaagaaaaa caatgcaagt ccacccgaga ttaatgtctc agcactttac aggtgactaa
     5281 aaatgctaat tttatgactt tgccaaatat tttccaaggt gcacgtgtgc ccccatgtga
     5341 aagaaatatc tcccccagcc ttccttaaac tattagctgc tatcttattt catgaataaa
     5401 gtctttttat tt
//
LOCUS       XM_032618146            5615 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X2, mRNA.
ACCESSION   XM_032618146
VERSION     XM_032618146.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5615
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5615
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             322..4395
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X1"
                     /protein_id="XP_032474037.1"
                     /db_xref="GeneID:116746641"
                     /translation="MDQPGPPAPVREGNRLQAGGGAENEVKYDTNNNEEEEGEQLDLY
                     GVDEAPEADRRAPGAPEARDTGADSPASNTTIPATNTAAGSGHENGTGADTDAVAEPL
                     RPGVPTRVNPYSVIDITPLHEDQPPPPDPEAEGEGGGLHVPSGYSVPVPCGYAVPSGL
                     PLLLPAYSSPALTPAGPAETQEGAEDSQLNSLSPEDPTNSEGPVHKEDSALARWVADP
                     ANTAWMENPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYE
                     EQSDSESRNGVPQSFLRSDHKKQLSHDLTRLKEHYEKKMRHLVANAVGAVEIQQLKHK
                     HELKMQKLVKAAKEGTKDGLEKTKAVVKRGRSFIRTKSFVSADHRPCLEEEQNLFIDV
                     DCKHPEAVLTPMPEGLSQQQVVRRYILGSVVDNEKSYVDALKRILEQYEKPLSEMEPK
                     ILSERKLKTVFYRVKEVLQCHCMFQIALASRVAEWDSVEMIGDVFVASFSKSMLLDAY
                     SEYVNNFSTAVAILKKTCATKPAFLEFLKQCQEASPDRVTLYSLMMKPIQRFPQFILL
                     LQDMLKNTPRGHPDRLPLQMALTELETLAEKLNERKRDADQRCEIKQIAKAVNERYLN
                     KLLSSGSRYLVRSDDVVETVYNDRGEIVKTKERRLFMLNDVLMCATVSARTSHDSSAL
                     TSTGQRYLLKWSVPLGHVEVIEYGGSEGAGENGRGPVVPAPESLAAVAGTKPNRVYVG
                     PGQLYQDLQNLAHDLNVVGQITQLVGNLKGNYQNLNQSVAHDWTSGLQRLILKKEEEI
                     RAADCCRIQLQLPGKQDKSGRPTFFTAVFNTFTAAIKESWINNLQMAKLALEEENHLG
                     WFYVEDDGNQIKKERHPLLVGHMPVTVAKQQEFKIECAVYNPEPYLNNENQPDSFSTA
                     HGFLWIGSCTSQMGQIAIVSFQNSSPKVIECFNVESRVLCMVYVPAEDRPREPESTGG
                     RVLGIPTVCLGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTPQSLYAGLVN
                     GAVAIYARADDGSWNSEPQTVIQLGVLPVRSLLMMEDTLWAASGGQVSVISVETHAVE
                     SQLEAHQEEGMVVSHMAIAGVGIWIAFTSGSTLRLFHTETLKHLQDVNVATPVHHMLP
                     GHQRLSVTSLLVCHGLLMVGTSLGVVVALPVPRLQGIPKVTGRGLVSYHAHNGPVKFL
                     VVATAASKADRDKPRDSPPPGADPQDEDQRDPLPGEGPGPCLSRSSPDAVWLGASLGS
                     LAQASDVSSTSGSPTPSQGSGSLGPRSEESFIQDPLRLPCSSPGRGRRARKAKASSVL
                     VACGGQGHRRVSRKARQQRPEELASSVMVWQIPLLNV"
     misc_feature    1564..2118
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1582..1584,1594..1596,1888..1890,1969..1974,
                     1981..1986,1990..1995,2002..2007,2014..2019,2026..2028,
                     2104..2106,2116..2118)
                     /gene="ARHGEF10"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2185..2640
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    2962..4389
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 gacgctgagg ggtgcgggac cagccttctc ccggcctggc ggttcacgct cattcttaga
       61 ccagcgtgcg aggaaacagg aagagcagaa aagagaaagg aaacaaagca ggatgcaggc
      121 atccggccca gacccaaggg tttactgacc cgctggctcg aaagggcctg aggaaacgaa
      181 catgtgtgaa attaagcaga gaatcaaggc gtcctgggcc gggaggggtc cggccattga
      241 acccagctgc aaaaatcaac gcctggctgc aattcaaggt cccagatcct ccgagcccag
      301 gagcgaggtg gacgcggcag catggaccag ccgggcccgc cggctcccgt ccgggaaggt
      361 aacaggttgc aggccggtgg cggggcagag aatgaagtca agtacgacac taacaacaat
      421 gaggaagagg agggggaaca gctggatctc tacggcgtag atgaagctcc agaagcagac
      481 agacgggctc cgggtgcccc cgaggccagg gacacgggag cagacagccc cgcctccaac
      541 accaccatcc ccgccaccaa caccgcggcc ggatcaggac atgaaaatgg cacgggagcg
      601 gacacagacg ccgtggcgga accactgaga cccggggtcc cgacgagagt caacccctac
      661 tccgtcatcg acatcacacc cctccatgag gaccagccgc cgcctccgga cccggaggcc
      721 gagggggagg gcgggggcct gcatgtgccc agcgggtact cggtacctgt gccctgcggc
      781 tacgccgtgc cctccggcct gcccctgctg ctgcctgcct actccagccc tgccctcacc
      841 cccgcgggcc ccgcagagac acaggaagga gcagaagaca gccagttgaa ttccttgagt
      901 cctgaggatc caacaaacag tgaaggtcca gtccataagg aggacagcgc cctcgcccgg
      961 tgggttgcag atccggccaa tacagcctgg atggaaaatc cggaagaagc catttatgat
     1021 gacgtgccaa gagaaaattc agactctgag ccagatgaaa tgatttatga tgatgttgag
     1081 aatggagatg aaggtggaaa cagctctctg gagtacgggt ggagttcgag cgaatttgag
     1141 agctacgagg aacagagcga ctcggagagc agaaacgggg tcccccagtc cttcctgcgc
     1201 agcgaccaca aaaagcaact ttcccatgac ctaacccgct taaaggagca ctatgagaaa
     1261 aagatgagac atttggtggc aaacgcggtg ggcgcggtag agattcagca gctaaagcac
     1321 aaacatgaac tgaagatgca gaagctcgtg aaggccgcca aggagggcac caaggatggc
     1381 ctggagaaga cgaaggctgt ggtgaagcgg ggccgctcct tcatcaggac caagtccttc
     1441 gtctctgcag accacagacc ctgtcttgaa gaggaacaga acttgttcat cgacgtggac
     1501 tgcaagcatc cggaagctgt cctcacccca atgcccgaag gcttgtctca gcagcaggtc
     1561 gtaagaagat atattctggg ttcggttgtc gacaatgaaa agagctacgt ggatgctctt
     1621 aagaggattt tggagcaata cgagaagccg ctgtctgaga tggagcccaa gatcctgagc
     1681 gagaggaagc tgaagacggt cttctaccgg gtcaaggagg tcctgcagtg ccactgcatg
     1741 ttccagattg cgctggccag ccgcgtggcc gagtgggact cggtggagat gatcggagac
     1801 gtcttcgtgg cctcgttttc taagtccatg ctgctggatg cttacagcga atatgtgaat
     1861 aattttagca cagctgtggc aatccttaag aaaacgtgcg ctacaaaacc tgcttttctt
     1921 gaatttttaa agcagtgcca ggaggccagc cctgaccgcg tcacgctgta cagcctgatg
     1981 atgaagccca tccagaggtt cccgcagttc atcctgctgc tccaggacat gctgaagaac
     2041 acgccccgag gacaccccga caggctaccc ctccagatgg cgctgacgga gctcgagaca
     2101 ctggcggaga aattaaacga gaggaagagg gacgctgatc aacgctgcga aatcaaacag
     2161 atagcaaaag ccgtaaacga gcggtacctg aacaagcttc tcagcagcgg gagtcgctac
     2221 ctcgtccgct ccgacgacgt ggtagaaact gtctacaacg accgggggga gatcgtgaaa
     2281 accaaggagc gccggctctt catgctgaat gacgtgctca tgtgcgccac ggtcagcgcc
     2341 cgcacctccc atgacagcag tgccctgaca tcgaccggcc agaggtattt gttgaagtgg
     2401 agcgtccctc tcgggcacgt ggaagtgata gaatacggcg gcagcgaggg cgcgggggag
     2461 aatggcaggg gtcccgtggt gcccgcgccc gagagcctgg cagcggtggc cggcaccaag
     2521 ccaaacagag tttacgtggg gccggggcag ctgtatcaag atttacaaaa tttggcgcat
     2581 gacttaaatg tcgtcggtca aatcactcaa ctggttggaa acctcaaagg aaactatcag
     2641 aatttgaacc agtcggtagc ccacgactgg acctcgggtt tacagaggct tattctgaag
     2701 aaggaagagg agatcagagc ggccgactgc tgtcggatcc agttacagct cccggggaaa
     2761 caggacaagt ccggccggcc gactttcttc actgctgtgt tcaatacctt caccgccgcc
     2821 atcaaggagt cctggatcaa caacctgcag atggccaagc tcgccctcga ggaagagaac
     2881 cacctgggct ggttctacgt ggaggacgac gggaatcaga tcaagaagga gaggcacccc
     2941 ctcctcgtgg gacacatgcc tgtgacggtg gccaagcagc aggagttcaa gatcgaatgt
     3001 gccgtttata atcctgagcc ttacctaaat aatgagaatc agccagactc gttttccacg
     3061 gctcatggtt tcctgtggat cggaagctgc accagtcaga tgggtcagat agccatcgtc
     3121 tcctttcaaa actccagccc caaggtcatc gagtgcttca acgtggagtc ccgcgtcctg
     3181 tgcatggtgt acgtgcccgc agaggacagg ccccgggagc ccgagagcac ggggggccga
     3241 gtgctgggca tccccaccgt ctgcctgggg acggaggagg ggagcatttc catttataaa
     3301 agcagccaag gctccaagaa ggtgcggctc cagcacttct tcactcccga gaaatccacg
     3361 gtcatgagct tggcctgcac gccgcagagc ctgtacgccg gcctggtcaa cggggccgtg
     3421 gccatctacg ccagagcgga cgatggatcc tggaattccg aacctcaaac agtgatacaa
     3481 ttaggcgtcc tcccagttcg aagtctgcta atgatggaag acacactgtg ggcggcgtct
     3541 ggaggtcaag tgtctgtaat cagtgtggag actcacgccg tggagagcca gctggaggcc
     3601 caccaggagg agggcatggt ggtctcacac atggccattg ccggtgtggg catctggatc
     3661 gccttcacct cagggtccac gctccgcctc ttccacacgg agacgctcaa acatctccag
     3721 gacgtcaacg tcgccacccc ggtccaccac atgctgccag gacaccagcg gctgtctgtg
     3781 accagcctgc tcgtctgcca cggcttgctg atggtcggca ccagcctggg cgtcgtggtg
     3841 gccctgcccg tccctcgtct gcaggggatc cccaaggtga ctggtcgagg cctggtctcc
     3901 taccatgctc acaacgggcc cgtcaagttc ctggtcgtgg ccacagccgc ctccaaggcg
     3961 gacagagaca agcccaggga cagcccgccc cccggtgccg acccccagga tgaagaccag
     4021 agggacccgc tccccggtga ggggcccggg ccctgcctga gccgcagcag tcctgacgcc
     4081 gtctggctgg gggcttcgct gggctccctc gcccaggcca gcgacgtctc ctccacgtct
     4141 gggtccccga cgccttccca gggctcgggc tccctggggc cccgctcaga ggagagtttc
     4201 atccaggacc ccctgcggct cccctgcagc tcccccggcc gagggcggcg ggccaggaag
     4261 gccaaggcca gctccgtgct ggtggcctgt gggggacagg gccaccggcg ggtgagcagg
     4321 aaggccaggc agcagcggcc ggaggagttg gcctcgtccg tcatggtctg gcagatcccc
     4381 ctgctgaatg tgtgagccag ggtcgagatt cgggggtggc ctttcagcca agtcacacac
     4441 cccgagcggt cccgccgcat ctatactgac tgggtgtgaa tcgccagccg tctcggggcc
     4501 gaaaagtgca atatcgtcac gggggcatct ccggcagccc ctccctccac cccaggcagg
     4561 ggagccccgt gtgaacgcgc atgaggaagg gggtggacgc cgtgttcgag tgggtggggg
     4621 tcccgggagg atgctccccc tctgaccccc gtggtcctta ataaacacgg gacgctgcag
     4681 acctgttctc gtagcctgtc acctagagaa ctcacagact cagaactcac ggggaaatac
     4741 agcgtattca ctggtggagg ggtttattaa caattcttaa agtaattgtc cttgattcag
     4801 attcactact tttatttatg ttgtatatct tttaactcca gaatagaatt tgtaacaatg
     4861 aagaaagcca cgtaacacat accaggccgg gtggtgttat gtgctatctg agttgaactg
     4921 agttttccaa agtggtataa cacgtgtact gtatattttt aacaaagtag tatttttata
     4981 tcgcattttt ctattaaaaa aaattaacaa agttttagtc actatgttat ccgtaacgtt
     5041 tcacaaataa cgtttgcttt gaaccaaaat cctcaacgcc tgtcaacatt tagactcaag
     5101 cgtcaatgcc aaaataccca cgttggagat gtgtgtgttt tagtgtctca ggagacgtag
     5161 aaggtgtctt ggtccatcct ttcctgctgt gtttgcatct gtcgaccagg agcgcttcta
     5221 gctttgaatg catgtcctga aggatgcacg gtgctggtca gggcgggcgc cggtgctggc
     5281 ggcggacaca ggacacagga aaggtggccc ttggtcggca gactggcact tagggcccct
     5341 tctgcgggcg tcatgcacga gtggtccgtg agttcgctgt gctccacgtg tcgttatcta
     5401 tcaatgttct acttactgga tggttaagaa aaacaatgca agtccacccg agattaatgt
     5461 ctcagcactt tacaggtgac taaaaatgct aattttatga ctttgccaaa tattttccaa
     5521 ggtgcacgtg tgcccccatg tgaaagaaat atctccccca gccttcctta aactattagc
     5581 tgctatctta tttcatgaat aaagtctttt tattt
//
LOCUS       XM_032618147            5517 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X3, mRNA.
ACCESSION   XM_032618147
VERSION     XM_032618147.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5517
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5517
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             217..4290
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X1"
                     /protein_id="XP_032474038.1"
                     /db_xref="GeneID:116746641"
                     /translation="MDQPGPPAPVREGNRLQAGGGAENEVKYDTNNNEEEEGEQLDLY
                     GVDEAPEADRRAPGAPEARDTGADSPASNTTIPATNTAAGSGHENGTGADTDAVAEPL
                     RPGVPTRVNPYSVIDITPLHEDQPPPPDPEAEGEGGGLHVPSGYSVPVPCGYAVPSGL
                     PLLLPAYSSPALTPAGPAETQEGAEDSQLNSLSPEDPTNSEGPVHKEDSALARWVADP
                     ANTAWMENPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYE
                     EQSDSESRNGVPQSFLRSDHKKQLSHDLTRLKEHYEKKMRHLVANAVGAVEIQQLKHK
                     HELKMQKLVKAAKEGTKDGLEKTKAVVKRGRSFIRTKSFVSADHRPCLEEEQNLFIDV
                     DCKHPEAVLTPMPEGLSQQQVVRRYILGSVVDNEKSYVDALKRILEQYEKPLSEMEPK
                     ILSERKLKTVFYRVKEVLQCHCMFQIALASRVAEWDSVEMIGDVFVASFSKSMLLDAY
                     SEYVNNFSTAVAILKKTCATKPAFLEFLKQCQEASPDRVTLYSLMMKPIQRFPQFILL
                     LQDMLKNTPRGHPDRLPLQMALTELETLAEKLNERKRDADQRCEIKQIAKAVNERYLN
                     KLLSSGSRYLVRSDDVVETVYNDRGEIVKTKERRLFMLNDVLMCATVSARTSHDSSAL
                     TSTGQRYLLKWSVPLGHVEVIEYGGSEGAGENGRGPVVPAPESLAAVAGTKPNRVYVG
                     PGQLYQDLQNLAHDLNVVGQITQLVGNLKGNYQNLNQSVAHDWTSGLQRLILKKEEEI
                     RAADCCRIQLQLPGKQDKSGRPTFFTAVFNTFTAAIKESWINNLQMAKLALEEENHLG
                     WFYVEDDGNQIKKERHPLLVGHMPVTVAKQQEFKIECAVYNPEPYLNNENQPDSFSTA
                     HGFLWIGSCTSQMGQIAIVSFQNSSPKVIECFNVESRVLCMVYVPAEDRPREPESTGG
                     RVLGIPTVCLGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTPQSLYAGLVN
                     GAVAIYARADDGSWNSEPQTVIQLGVLPVRSLLMMEDTLWAASGGQVSVISVETHAVE
                     SQLEAHQEEGMVVSHMAIAGVGIWIAFTSGSTLRLFHTETLKHLQDVNVATPVHHMLP
                     GHQRLSVTSLLVCHGLLMVGTSLGVVVALPVPRLQGIPKVTGRGLVSYHAHNGPVKFL
                     VVATAASKADRDKPRDSPPPGADPQDEDQRDPLPGEGPGPCLSRSSPDAVWLGASLGS
                     LAQASDVSSTSGSPTPSQGSGSLGPRSEESFIQDPLRLPCSSPGRGRRARKAKASSVL
                     VACGGQGHRRVSRKARQQRPEELASSVMVWQIPLLNV"
     misc_feature    1459..2013
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1477..1479,1489..1491,1783..1785,1864..1869,
                     1876..1881,1885..1890,1897..1902,1909..1914,1921..1923,
                     1999..2001,2011..2013)
                     /gene="ARHGEF10"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2080..2535
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    2857..4284
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 ggggccgcgg acaagaggag gggagaggtg tcctcggagg gacggagggt cggggttctg
       61 tcctggctgc aggaacatgt gtgaaattaa gcagagaatc aaggcgtcct gggccgggag
      121 gggtccggcc attgaaccca gctgcaaaaa tcaacgcctg gctgcaattc aaggtcccag
      181 atcctccgag cccaggagcg aggtggacgc ggcagcatgg accagccggg cccgccggct
      241 cccgtccggg aaggtaacag gttgcaggcc ggtggcgggg cagagaatga agtcaagtac
      301 gacactaaca acaatgagga agaggagggg gaacagctgg atctctacgg cgtagatgaa
      361 gctccagaag cagacagacg ggctccgggt gcccccgagg ccagggacac gggagcagac
      421 agccccgcct ccaacaccac catccccgcc accaacaccg cggccggatc aggacatgaa
      481 aatggcacgg gagcggacac agacgccgtg gcggaaccac tgagacccgg ggtcccgacg
      541 agagtcaacc cctactccgt catcgacatc acacccctcc atgaggacca gccgccgcct
      601 ccggacccgg aggccgaggg ggagggcggg ggcctgcatg tgcccagcgg gtactcggta
      661 cctgtgccct gcggctacgc cgtgccctcc ggcctgcccc tgctgctgcc tgcctactcc
      721 agccctgccc tcacccccgc gggccccgca gagacacagg aaggagcaga agacagccag
      781 ttgaattcct tgagtcctga ggatccaaca aacagtgaag gtccagtcca taaggaggac
      841 agcgccctcg cccggtgggt tgcagatccg gccaatacag cctggatgga aaatccggaa
      901 gaagccattt atgatgacgt gccaagagaa aattcagact ctgagccaga tgaaatgatt
      961 tatgatgatg ttgagaatgg agatgaaggt ggaaacagct ctctggagta cgggtggagt
     1021 tcgagcgaat ttgagagcta cgaggaacag agcgactcgg agagcagaaa cggggtcccc
     1081 cagtccttcc tgcgcagcga ccacaaaaag caactttccc atgacctaac ccgcttaaag
     1141 gagcactatg agaaaaagat gagacatttg gtggcaaacg cggtgggcgc ggtagagatt
     1201 cagcagctaa agcacaaaca tgaactgaag atgcagaagc tcgtgaaggc cgccaaggag
     1261 ggcaccaagg atggcctgga gaagacgaag gctgtggtga agcggggccg ctccttcatc
     1321 aggaccaagt ccttcgtctc tgcagaccac agaccctgtc ttgaagagga acagaacttg
     1381 ttcatcgacg tggactgcaa gcatccggaa gctgtcctca ccccaatgcc cgaaggcttg
     1441 tctcagcagc aggtcgtaag aagatatatt ctgggttcgg ttgtcgacaa tgaaaagagc
     1501 tacgtggatg ctcttaagag gattttggag caatacgaga agccgctgtc tgagatggag
     1561 cccaagatcc tgagcgagag gaagctgaag acggtcttct accgggtcaa ggaggtcctg
     1621 cagtgccact gcatgttcca gattgcgctg gccagccgcg tggccgagtg ggactcggtg
     1681 gagatgatcg gagacgtctt cgtggcctcg ttttctaagt ccatgctgct ggatgcttac
     1741 agcgaatatg tgaataattt tagcacagct gtggcaatcc ttaagaaaac gtgcgctaca
     1801 aaacctgctt ttcttgaatt tttaaagcag tgccaggagg ccagccctga ccgcgtcacg
     1861 ctgtacagcc tgatgatgaa gcccatccag aggttcccgc agttcatcct gctgctccag
     1921 gacatgctga agaacacgcc ccgaggacac cccgacaggc tacccctcca gatggcgctg
     1981 acggagctcg agacactggc ggagaaatta aacgagagga agagggacgc tgatcaacgc
     2041 tgcgaaatca aacagatagc aaaagccgta aacgagcggt acctgaacaa gcttctcagc
     2101 agcgggagtc gctacctcgt ccgctccgac gacgtggtag aaactgtcta caacgaccgg
     2161 ggggagatcg tgaaaaccaa ggagcgccgg ctcttcatgc tgaatgacgt gctcatgtgc
     2221 gccacggtca gcgcccgcac ctcccatgac agcagtgccc tgacatcgac cggccagagg
     2281 tatttgttga agtggagcgt ccctctcggg cacgtggaag tgatagaata cggcggcagc
     2341 gagggcgcgg gggagaatgg caggggtccc gtggtgcccg cgcccgagag cctggcagcg
     2401 gtggccggca ccaagccaaa cagagtttac gtggggccgg ggcagctgta tcaagattta
     2461 caaaatttgg cgcatgactt aaatgtcgtc ggtcaaatca ctcaactggt tggaaacctc
     2521 aaaggaaact atcagaattt gaaccagtcg gtagcccacg actggacctc gggtttacag
     2581 aggcttattc tgaagaagga agaggagatc agagcggccg actgctgtcg gatccagtta
     2641 cagctcccgg ggaaacagga caagtccggc cggccgactt tcttcactgc tgtgttcaat
     2701 accttcaccg ccgccatcaa ggagtcctgg atcaacaacc tgcagatggc caagctcgcc
     2761 ctcgaggaag agaaccacct gggctggttc tacgtggagg acgacgggaa tcagatcaag
     2821 aaggagaggc accccctcct cgtgggacac atgcctgtga cggtggccaa gcagcaggag
     2881 ttcaagatcg aatgtgccgt ttataatcct gagccttacc taaataatga gaatcagcca
     2941 gactcgtttt ccacggctca tggtttcctg tggatcggaa gctgcaccag tcagatgggt
     3001 cagatagcca tcgtctcctt tcaaaactcc agccccaagg tcatcgagtg cttcaacgtg
     3061 gagtcccgcg tcctgtgcat ggtgtacgtg cccgcagagg acaggccccg ggagcccgag
     3121 agcacggggg gccgagtgct gggcatcccc accgtctgcc tggggacgga ggaggggagc
     3181 atttccattt ataaaagcag ccaaggctcc aagaaggtgc ggctccagca cttcttcact
     3241 cccgagaaat ccacggtcat gagcttggcc tgcacgccgc agagcctgta cgccggcctg
     3301 gtcaacgggg ccgtggccat ctacgccaga gcggacgatg gatcctggaa ttccgaacct
     3361 caaacagtga tacaattagg cgtcctccca gttcgaagtc tgctaatgat ggaagacaca
     3421 ctgtgggcgg cgtctggagg tcaagtgtct gtaatcagtg tggagactca cgccgtggag
     3481 agccagctgg aggcccacca ggaggagggc atggtggtct cacacatggc cattgccggt
     3541 gtgggcatct ggatcgcctt cacctcaggg tccacgctcc gcctcttcca cacggagacg
     3601 ctcaaacatc tccaggacgt caacgtcgcc accccggtcc accacatgct gccaggacac
     3661 cagcggctgt ctgtgaccag cctgctcgtc tgccacggct tgctgatggt cggcaccagc
     3721 ctgggcgtcg tggtggccct gcccgtccct cgtctgcagg ggatccccaa ggtgactggt
     3781 cgaggcctgg tctcctacca tgctcacaac gggcccgtca agttcctggt cgtggccaca
     3841 gccgcctcca aggcggacag agacaagccc agggacagcc cgccccccgg tgccgacccc
     3901 caggatgaag accagaggga cccgctcccc ggtgaggggc ccgggccctg cctgagccgc
     3961 agcagtcctg acgccgtctg gctgggggct tcgctgggct ccctcgccca ggccagcgac
     4021 gtctcctcca cgtctgggtc cccgacgcct tcccagggct cgggctccct ggggccccgc
     4081 tcagaggaga gtttcatcca ggaccccctg cggctcccct gcagctcccc cggccgaggg
     4141 cggcgggcca ggaaggccaa ggccagctcc gtgctggtgg cctgtggggg acagggccac
     4201 cggcgggtga gcaggaaggc caggcagcag cggccggagg agttggcctc gtccgtcatg
     4261 gtctggcaga tccccctgct gaatgtgtga gccagggtcg agattcgggg gtggcctttc
     4321 agccaagtca cacaccccga gcggtcccgc cgcatctata ctgactgggt gtgaatcgcc
     4381 agccgtctcg gggccgaaaa gtgcaatatc gtcacggggg catctccggc agcccctccc
     4441 tccaccccag gcaggggagc cccgtgtgaa cgcgcatgag gaagggggtg gacgccgtgt
     4501 tcgagtgggt gggggtcccg ggaggatgct ccccctctga cccccgtggt ccttaataaa
     4561 cacgggacgc tgcagacctg ttctcgtagc ctgtcaccta gagaactcac agactcagaa
     4621 ctcacgggga aatacagcgt attcactggt ggaggggttt attaacaatt cttaaagtaa
     4681 ttgtccttga ttcagattca ctacttttat ttatgttgta tatcttttaa ctccagaata
     4741 gaatttgtaa caatgaagaa agccacgtaa cacataccag gccgggtggt gttatgtgct
     4801 atctgagttg aactgagttt tccaaagtgg tataacacgt gtactgtata tttttaacaa
     4861 agtagtattt ttatatcgca tttttctatt aaaaaaaatt aacaaagttt tagtcactat
     4921 gttatccgta acgtttcaca aataacgttt gctttgaacc aaaatcctca acgcctgtca
     4981 acatttagac tcaagcgtca atgccaaaat acccacgttg gagatgtgtg tgttttagtg
     5041 tctcaggaga cgtagaaggt gtcttggtcc atcctttcct gctgtgtttg catctgtcga
     5101 ccaggagcgc ttctagcttt gaatgcatgt cctgaaggat gcacggtgct ggtcagggcg
     5161 ggcgccggtg ctggcggcgg acacaggaca caggaaaggt ggcccttggt cggcagactg
     5221 gcacttaggg ccccttctgc gggcgtcatg cacgagtggt ccgtgagttc gctgtgctcc
     5281 acgtgtcgtt atctatcaat gttctactta ctggatggtt aagaaaaaca atgcaagtcc
     5341 acccgagatt aatgtctcag cactttacag gtgactaaaa atgctaattt tatgactttg
     5401 ccaaatattt tccaaggtgc acgtgtgccc ccatgtgaaa gaaatatctc ccccagcctt
     5461 ccttaaacta ttagctgcta tcttatttca tgaataaagt ctttttattt aaaaata
//
LOCUS       XM_032618148            6025 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X4, mRNA.
ACCESSION   XM_032618148
VERSION     XM_032618148.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6025
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6025
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             753..4805
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X2"
                     /protein_id="XP_032474039.1"
                     /db_xref="GeneID:116746641"
                     /translation="MVQDVSGCRTQHLDDENEVKYDTNNNEEEEGEQLDLYGVDEAPE
                     ADRRAPGAPEARDTGADSPASNTTIPATNTAAGSGHENGTGADTDAVAEPLRPGVPTR
                     VNPYSVIDITPLHEDQPPPPDPEAEGEGGGLHVPSGYSVPVPCGYAVPSGLPLLLPAY
                     SSPALTPAGPAETQEGAEDSQLNSLSPEDPTNSEGPVHKEDSALARWVADPANTAWME
                     NPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYEEQSDSES
                     RNGVPQSFLRSDHKKQLSHDLTRLKEHYEKKMRHLVANAVGAVEIQQLKHKHELKMQK
                     LVKAAKEGTKDGLEKTKAVVKRGRSFIRTKSFVSADHRPCLEEEQNLFIDVDCKHPEA
                     VLTPMPEGLSQQQVVRRYILGSVVDNEKSYVDALKRILEQYEKPLSEMEPKILSERKL
                     KTVFYRVKEVLQCHCMFQIALASRVAEWDSVEMIGDVFVASFSKSMLLDAYSEYVNNF
                     STAVAILKKTCATKPAFLEFLKQCQEASPDRVTLYSLMMKPIQRFPQFILLLQDMLKN
                     TPRGHPDRLPLQMALTELETLAEKLNERKRDADQRCEIKQIAKAVNERYLNKLLSSGS
                     RYLVRSDDVVETVYNDRGEIVKTKERRLFMLNDVLMCATVSARTSHDSSALTSTGQRY
                     LLKWSVPLGHVEVIEYGGSEGAGENGRGPVVPAPESLAAVAGTKPNRVYVGPGQLYQD
                     LQNLAHDLNVVGQITQLVGNLKGNYQNLNQSVAHDWTSGLQRLILKKEEEIRAADCCR
                     IQLQLPGKQDKSGRPTFFTAVFNTFTAAIKESWINNLQMAKLALEEENHLGWFYVEDD
                     GNQIKKERHPLLVGHMPVTVAKQQEFKIECAVYNPEPYLNNENQPDSFSTAHGFLWIG
                     SCTSQMGQIAIVSFQNSSPKVIECFNVESRVLCMVYVPAEDRPREPESTGGRVLGIPT
                     VCLGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTPQSLYAGLVNGAVAIYA
                     RADDGSWNSEPQTVIQLGVLPVRSLLMMEDTLWAASGGQVSVISVETHAVESQLEAHQ
                     EEGMVVSHMAIAGVGIWIAFTSGSTLRLFHTETLKHLQDVNVATPVHHMLPGHQRLSV
                     TSLLVCHGLLMVGTSLGVVVALPVPRLQGIPKVTGRGLVSYHAHNGPVKFLVVATAAS
                     KADRDKPRDSPPPGADPQDEDQRDPLPGEGPGPCLSRSSPDAVWLGASLGSLAQASDV
                     SSTSGSPTPSQGSGSLGPRSEESFIQDPLRLPCSSPGRGRRARKAKASSVLVACGGQG
                     HRRVSRKARQQRPEELASSVMVWQIPLLNV"
     misc_feature    1974..2528
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1992..1994,2004..2006,2298..2300,2379..2384,
                     2391..2396,2400..2405,2412..2417,2424..2429,2436..2438,
                     2514..2516,2526..2528)
                     /gene="ARHGEF10"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2595..3050
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    3372..4799
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 agtagccccc gctcgccgca actggagcaa gtccgtgcgc agcaacaaag gcccaacgca
       61 gccaaaaata aataaaatta aatcttaaaa aaaataattc ccttgaacat gacagagggg
      121 ctggaaatca ctgaggtccg ttctcctcag caccactggg acacttgtgt tttcatctgt
      181 tctgtctttc ccctcgtatt tcttctctgc atgattgcag ccattgaatt tacattttta
      241 agattgttga gtatacattt ttatgtcgta cttgaaactt tacaagtatt ttccgtgtca
      301 ccacatagct ttcacagctg tcattctcag tggctgcata gtatcccgtg cacagtgtca
      361 taacgtgttc aggtgaggta acgctatcca tgtccatcgt tacctgtcat caggcaccgg
      421 tgccttttcc agaagcttcc ttggcgacaa gtcaaatcgt ccgggtaaag tgggatttgg
      481 gaggaggtgg ggtgtggcgg agaagcccgc ggcttcgagg gttttgcaca cagctgctcg
      541 ggtttgagcg tggtccctga ggtgcgcgag cggatgaccg ggggtatgtg tgcatctctc
      601 caggcctcgg tttccttctc ctttgggata acagctggag cagccccgcc ctcaggaggt
      661 aacatccata aagctcttag aggcggggcc cctggaggct ctcagagagt caagctagaa
      721 gatgctccgg gatgtaaaca ctgtattcca agatggtcca ggatgtctca ggatgtagaa
      781 ctcaacactt agatgatgag aatgaagtca agtacgacac taacaacaat gaggaagagg
      841 agggggaaca gctggatctc tacggcgtag atgaagctcc agaagcagac agacgggctc
      901 cgggtgcccc cgaggccagg gacacgggag cagacagccc cgcctccaac accaccatcc
      961 ccgccaccaa caccgcggcc ggatcaggac atgaaaatgg cacgggagcg gacacagacg
     1021 ccgtggcgga accactgaga cccggggtcc cgacgagagt caacccctac tccgtcatcg
     1081 acatcacacc cctccatgag gaccagccgc cgcctccgga cccggaggcc gagggggagg
     1141 gcgggggcct gcatgtgccc agcgggtact cggtacctgt gccctgcggc tacgccgtgc
     1201 cctccggcct gcccctgctg ctgcctgcct actccagccc tgccctcacc cccgcgggcc
     1261 ccgcagagac acaggaagga gcagaagaca gccagttgaa ttccttgagt cctgaggatc
     1321 caacaaacag tgaaggtcca gtccataagg aggacagcgc cctcgcccgg tgggttgcag
     1381 atccggccaa tacagcctgg atggaaaatc cggaagaagc catttatgat gacgtgccaa
     1441 gagaaaattc agactctgag ccagatgaaa tgatttatga tgatgttgag aatggagatg
     1501 aaggtggaaa cagctctctg gagtacgggt ggagttcgag cgaatttgag agctacgagg
     1561 aacagagcga ctcggagagc agaaacgggg tcccccagtc cttcctgcgc agcgaccaca
     1621 aaaagcaact ttcccatgac ctaacccgct taaaggagca ctatgagaaa aagatgagac
     1681 atttggtggc aaacgcggtg ggcgcggtag agattcagca gctaaagcac aaacatgaac
     1741 tgaagatgca gaagctcgtg aaggccgcca aggagggcac caaggatggc ctggagaaga
     1801 cgaaggctgt ggtgaagcgg ggccgctcct tcatcaggac caagtccttc gtctctgcag
     1861 accacagacc ctgtcttgaa gaggaacaga acttgttcat cgacgtggac tgcaagcatc
     1921 cggaagctgt cctcacccca atgcccgaag gcttgtctca gcagcaggtc gtaagaagat
     1981 atattctggg ttcggttgtc gacaatgaaa agagctacgt ggatgctctt aagaggattt
     2041 tggagcaata cgagaagccg ctgtctgaga tggagcccaa gatcctgagc gagaggaagc
     2101 tgaagacggt cttctaccgg gtcaaggagg tcctgcagtg ccactgcatg ttccagattg
     2161 cgctggccag ccgcgtggcc gagtgggact cggtggagat gatcggagac gtcttcgtgg
     2221 cctcgttttc taagtccatg ctgctggatg cttacagcga atatgtgaat aattttagca
     2281 cagctgtggc aatccttaag aaaacgtgcg ctacaaaacc tgcttttctt gaatttttaa
     2341 agcagtgcca ggaggccagc cctgaccgcg tcacgctgta cagcctgatg atgaagccca
     2401 tccagaggtt cccgcagttc atcctgctgc tccaggacat gctgaagaac acgccccgag
     2461 gacaccccga caggctaccc ctccagatgg cgctgacgga gctcgagaca ctggcggaga
     2521 aattaaacga gaggaagagg gacgctgatc aacgctgcga aatcaaacag atagcaaaag
     2581 ccgtaaacga gcggtacctg aacaagcttc tcagcagcgg gagtcgctac ctcgtccgct
     2641 ccgacgacgt ggtagaaact gtctacaacg accgggggga gatcgtgaaa accaaggagc
     2701 gccggctctt catgctgaat gacgtgctca tgtgcgccac ggtcagcgcc cgcacctccc
     2761 atgacagcag tgccctgaca tcgaccggcc agaggtattt gttgaagtgg agcgtccctc
     2821 tcgggcacgt ggaagtgata gaatacggcg gcagcgaggg cgcgggggag aatggcaggg
     2881 gtcccgtggt gcccgcgccc gagagcctgg cagcggtggc cggcaccaag ccaaacagag
     2941 tttacgtggg gccggggcag ctgtatcaag atttacaaaa tttggcgcat gacttaaatg
     3001 tcgtcggtca aatcactcaa ctggttggaa acctcaaagg aaactatcag aatttgaacc
     3061 agtcggtagc ccacgactgg acctcgggtt tacagaggct tattctgaag aaggaagagg
     3121 agatcagagc ggccgactgc tgtcggatcc agttacagct cccggggaaa caggacaagt
     3181 ccggccggcc gactttcttc actgctgtgt tcaatacctt caccgccgcc atcaaggagt
     3241 cctggatcaa caacctgcag atggccaagc tcgccctcga ggaagagaac cacctgggct
     3301 ggttctacgt ggaggacgac gggaatcaga tcaagaagga gaggcacccc ctcctcgtgg
     3361 gacacatgcc tgtgacggtg gccaagcagc aggagttcaa gatcgaatgt gccgtttata
     3421 atcctgagcc ttacctaaat aatgagaatc agccagactc gttttccacg gctcatggtt
     3481 tcctgtggat cggaagctgc accagtcaga tgggtcagat agccatcgtc tcctttcaaa
     3541 actccagccc caaggtcatc gagtgcttca acgtggagtc ccgcgtcctg tgcatggtgt
     3601 acgtgcccgc agaggacagg ccccgggagc ccgagagcac ggggggccga gtgctgggca
     3661 tccccaccgt ctgcctgggg acggaggagg ggagcatttc catttataaa agcagccaag
     3721 gctccaagaa ggtgcggctc cagcacttct tcactcccga gaaatccacg gtcatgagct
     3781 tggcctgcac gccgcagagc ctgtacgccg gcctggtcaa cggggccgtg gccatctacg
     3841 ccagagcgga cgatggatcc tggaattccg aacctcaaac agtgatacaa ttaggcgtcc
     3901 tcccagttcg aagtctgcta atgatggaag acacactgtg ggcggcgtct ggaggtcaag
     3961 tgtctgtaat cagtgtggag actcacgccg tggagagcca gctggaggcc caccaggagg
     4021 agggcatggt ggtctcacac atggccattg ccggtgtggg catctggatc gccttcacct
     4081 cagggtccac gctccgcctc ttccacacgg agacgctcaa acatctccag gacgtcaacg
     4141 tcgccacccc ggtccaccac atgctgccag gacaccagcg gctgtctgtg accagcctgc
     4201 tcgtctgcca cggcttgctg atggtcggca ccagcctggg cgtcgtggtg gccctgcccg
     4261 tccctcgtct gcaggggatc cccaaggtga ctggtcgagg cctggtctcc taccatgctc
     4321 acaacgggcc cgtcaagttc ctggtcgtgg ccacagccgc ctccaaggcg gacagagaca
     4381 agcccaggga cagcccgccc cccggtgccg acccccagga tgaagaccag agggacccgc
     4441 tccccggtga ggggcccggg ccctgcctga gccgcagcag tcctgacgcc gtctggctgg
     4501 gggcttcgct gggctccctc gcccaggcca gcgacgtctc ctccacgtct gggtccccga
     4561 cgccttccca gggctcgggc tccctggggc cccgctcaga ggagagtttc atccaggacc
     4621 ccctgcggct cccctgcagc tcccccggcc gagggcggcg ggccaggaag gccaaggcca
     4681 gctccgtgct ggtggcctgt gggggacagg gccaccggcg ggtgagcagg aaggccaggc
     4741 agcagcggcc ggaggagttg gcctcgtccg tcatggtctg gcagatcccc ctgctgaatg
     4801 tgtgagccag ggtcgagatt cgggggtggc ctttcagcca agtcacacac cccgagcggt
     4861 cccgccgcat ctatactgac tgggtgtgaa tcgccagccg tctcggggcc gaaaagtgca
     4921 atatcgtcac gggggcatct ccggcagccc ctccctccac cccaggcagg ggagccccgt
     4981 gtgaacgcgc atgaggaagg gggtggacgc cgtgttcgag tgggtggggg tcccgggagg
     5041 atgctccccc tctgaccccc gtggtcctta ataaacacgg gacgctgcag acctgttctc
     5101 gtagcctgtc acctagagaa ctcacagact cagaactcac ggggaaatac agcgtattca
     5161 ctggtggagg ggtttattaa caattcttaa agtaattgtc cttgattcag attcactact
     5221 tttatttatg ttgtatatct tttaactcca gaatagaatt tgtaacaatg aagaaagcca
     5281 cgtaacacat accaggccgg gtggtgttat gtgctatctg agttgaactg agttttccaa
     5341 agtggtataa cacgtgtact gtatattttt aacaaagtag tatttttata tcgcattttt
     5401 ctattaaaaa aaattaacaa agttttagtc actatgttat ccgtaacgtt tcacaaataa
     5461 cgtttgcttt gaaccaaaat cctcaacgcc tgtcaacatt tagactcaag cgtcaatgcc
     5521 aaaataccca cgttggagat gtgtgtgttt tagtgtctca ggagacgtag aaggtgtctt
     5581 ggtccatcct ttcctgctgt gtttgcatct gtcgaccagg agcgcttcta gctttgaatg
     5641 catgtcctga aggatgcacg gtgctggtca gggcgggcgc cggtgctggc ggcggacaca
     5701 ggacacagga aaggtggccc ttggtcggca gactggcact tagggcccct tctgcgggcg
     5761 tcatgcacga gtggtccgtg agttcgctgt gctccacgtg tcgttatcta tcaatgttct
     5821 acttactgga tggttaagaa aaacaatgca agtccacccg agattaatgt ctcagcactt
     5881 tacaggtgac taaaaatgct aattttatga ctttgccaaa tattttccaa ggtgcacgtg
     5941 tgcccccatg tgaaagaaat atctccccca gccttcctta aactattagc tgctatctta
     6001 tttcatgaat aaagtctttt tattt
//
LOCUS       XM_032618149            5382 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X5, mRNA.
ACCESSION   XM_032618149
VERSION     XM_032618149.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5382
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5382
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             119..4162
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X3"
                     /protein_id="XP_032474040.1"
                     /db_xref="GeneID:116746641"
                     /translation="MDQPGPPAPVREENEVKYDTNNNEEEEGEQLDLYGVDEAPEADR
                     RAPGAPEARDTGADSPASNTTIPATNTAAGSGHENGTGADTDAVAEPLRPGVPTRVNP
                     YSVIDITPLHEDQPPPPDPEAEGEGGGLHVPSGYSVPVPCGYAVPSGLPLLLPAYSSP
                     ALTPAGPAETQEGAEDSQLNSLSPEDPTNSEGPVHKEDSALARWVADPANTAWMENPE
                     EAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYEEQSDSESRNG
                     VPQSFLRSDHKKQLSHDLTRLKEHYEKKMRHLVANAVGAVEIQQLKHKHELKMQKLVK
                     AAKEGTKDGLEKTKAVVKRGRSFIRTKSFVSADHRPCLEEEQNLFIDVDCKHPEAVLT
                     PMPEGLSQQQVVRRYILGSVVDNEKSYVDALKRILEQYEKPLSEMEPKILSERKLKTV
                     FYRVKEVLQCHCMFQIALASRVAEWDSVEMIGDVFVASFSKSMLLDAYSEYVNNFSTA
                     VAILKKTCATKPAFLEFLKQCQEASPDRVTLYSLMMKPIQRFPQFILLLQDMLKNTPR
                     GHPDRLPLQMALTELETLAEKLNERKRDADQRCEIKQIAKAVNERYLNKLLSSGSRYL
                     VRSDDVVETVYNDRGEIVKTKERRLFMLNDVLMCATVSARTSHDSSALTSTGQRYLLK
                     WSVPLGHVEVIEYGGSEGAGENGRGPVVPAPESLAAVAGTKPNRVYVGPGQLYQDLQN
                     LAHDLNVVGQITQLVGNLKGNYQNLNQSVAHDWTSGLQRLILKKEEEIRAADCCRIQL
                     QLPGKQDKSGRPTFFTAVFNTFTAAIKESWINNLQMAKLALEEENHLGWFYVEDDGNQ
                     IKKERHPLLVGHMPVTVAKQQEFKIECAVYNPEPYLNNENQPDSFSTAHGFLWIGSCT
                     SQMGQIAIVSFQNSSPKVIECFNVESRVLCMVYVPAEDRPREPESTGGRVLGIPTVCL
                     GTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTPQSLYAGLVNGAVAIYARAD
                     DGSWNSEPQTVIQLGVLPVRSLLMMEDTLWAASGGQVSVISVETHAVESQLEAHQEEG
                     MVVSHMAIAGVGIWIAFTSGSTLRLFHTETLKHLQDVNVATPVHHMLPGHQRLSVTSL
                     LVCHGLLMVGTSLGVVVALPVPRLQGIPKVTGRGLVSYHAHNGPVKFLVVATAASKAD
                     RDKPRDSPPPGADPQDEDQRDPLPGEGPGPCLSRSSPDAVWLGASLGSLAQASDVSST
                     SGSPTPSQGSGSLGPRSEESFIQDPLRLPCSSPGRGRRARKAKASSVLVACGGQGHRR
                     VSRKARQQRPEELASSVMVWQIPLLNV"
     misc_feature    1331..1885
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1349..1351,1361..1363,1655..1657,1736..1741,
                     1748..1753,1757..1762,1769..1774,1781..1786,1793..1795,
                     1871..1873,1883..1885)
                     /gene="ARHGEF10"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1952..2407
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    2729..4156
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 ccggggccgc ggacaagagg aggggagagg tgtcctcgga gggacggagg gtcggggttc
       61 tgtcctggct gcagggtccc agatcctccg agcccaggag cgaggtggac gcggcagcat
      121 ggaccagccg ggcccgccgg ctcccgtccg ggaagagaat gaagtcaagt acgacactaa
      181 caacaatgag gaagaggagg gggaacagct ggatctctac ggcgtagatg aagctccaga
      241 agcagacaga cgggctccgg gtgcccccga ggccagggac acgggagcag acagccccgc
      301 ctccaacacc accatccccg ccaccaacac cgcggccgga tcaggacatg aaaatggcac
      361 gggagcggac acagacgccg tggcggaacc actgagaccc ggggtcccga cgagagtcaa
      421 cccctactcc gtcatcgaca tcacacccct ccatgaggac cagccgccgc ctccggaccc
      481 ggaggccgag ggggagggcg ggggcctgca tgtgcccagc gggtactcgg tacctgtgcc
      541 ctgcggctac gccgtgccct ccggcctgcc cctgctgctg cctgcctact ccagccctgc
      601 cctcaccccc gcgggccccg cagagacaca ggaaggagca gaagacagcc agttgaattc
      661 cttgagtcct gaggatccaa caaacagtga aggtccagtc cataaggagg acagcgccct
      721 cgcccggtgg gttgcagatc cggccaatac agcctggatg gaaaatccgg aagaagccat
      781 ttatgatgac gtgccaagag aaaattcaga ctctgagcca gatgaaatga tttatgatga
      841 tgttgagaat ggagatgaag gtggaaacag ctctctggag tacgggtgga gttcgagcga
      901 atttgagagc tacgaggaac agagcgactc ggagagcaga aacggggtcc cccagtcctt
      961 cctgcgcagc gaccacaaaa agcaactttc ccatgaccta acccgcttaa aggagcacta
     1021 tgagaaaaag atgagacatt tggtggcaaa cgcggtgggc gcggtagaga ttcagcagct
     1081 aaagcacaaa catgaactga agatgcagaa gctcgtgaag gccgccaagg agggcaccaa
     1141 ggatggcctg gagaagacga aggctgtggt gaagcggggc cgctccttca tcaggaccaa
     1201 gtccttcgtc tctgcagacc acagaccctg tcttgaagag gaacagaact tgttcatcga
     1261 cgtggactgc aagcatccgg aagctgtcct caccccaatg cccgaaggct tgtctcagca
     1321 gcaggtcgta agaagatata ttctgggttc ggttgtcgac aatgaaaaga gctacgtgga
     1381 tgctcttaag aggattttgg agcaatacga gaagccgctg tctgagatgg agcccaagat
     1441 cctgagcgag aggaagctga agacggtctt ctaccgggtc aaggaggtcc tgcagtgcca
     1501 ctgcatgttc cagattgcgc tggccagccg cgtggccgag tgggactcgg tggagatgat
     1561 cggagacgtc ttcgtggcct cgttttctaa gtccatgctg ctggatgctt acagcgaata
     1621 tgtgaataat tttagcacag ctgtggcaat ccttaagaaa acgtgcgcta caaaacctgc
     1681 ttttcttgaa tttttaaagc agtgccagga ggccagccct gaccgcgtca cgctgtacag
     1741 cctgatgatg aagcccatcc agaggttccc gcagttcatc ctgctgctcc aggacatgct
     1801 gaagaacacg ccccgaggac accccgacag gctacccctc cagatggcgc tgacggagct
     1861 cgagacactg gcggagaaat taaacgagag gaagagggac gctgatcaac gctgcgaaat
     1921 caaacagata gcaaaagccg taaacgagcg gtacctgaac aagcttctca gcagcgggag
     1981 tcgctacctc gtccgctccg acgacgtggt agaaactgtc tacaacgacc ggggggagat
     2041 cgtgaaaacc aaggagcgcc ggctcttcat gctgaatgac gtgctcatgt gcgccacggt
     2101 cagcgcccgc acctcccatg acagcagtgc cctgacatcg accggccaga ggtatttgtt
     2161 gaagtggagc gtccctctcg ggcacgtgga agtgatagaa tacggcggca gcgagggcgc
     2221 gggggagaat ggcaggggtc ccgtggtgcc cgcgcccgag agcctggcag cggtggccgg
     2281 caccaagcca aacagagttt acgtggggcc ggggcagctg tatcaagatt tacaaaattt
     2341 ggcgcatgac ttaaatgtcg tcggtcaaat cactcaactg gttggaaacc tcaaaggaaa
     2401 ctatcagaat ttgaaccagt cggtagccca cgactggacc tcgggtttac agaggcttat
     2461 tctgaagaag gaagaggaga tcagagcggc cgactgctgt cggatccagt tacagctccc
     2521 ggggaaacag gacaagtccg gccggccgac tttcttcact gctgtgttca ataccttcac
     2581 cgccgccatc aaggagtcct ggatcaacaa cctgcagatg gccaagctcg ccctcgagga
     2641 agagaaccac ctgggctggt tctacgtgga ggacgacggg aatcagatca agaaggagag
     2701 gcaccccctc ctcgtgggac acatgcctgt gacggtggcc aagcagcagg agttcaagat
     2761 cgaatgtgcc gtttataatc ctgagcctta cctaaataat gagaatcagc cagactcgtt
     2821 ttccacggct catggtttcc tgtggatcgg aagctgcacc agtcagatgg gtcagatagc
     2881 catcgtctcc tttcaaaact ccagccccaa ggtcatcgag tgcttcaacg tggagtcccg
     2941 cgtcctgtgc atggtgtacg tgcccgcaga ggacaggccc cgggagcccg agagcacggg
     3001 gggccgagtg ctgggcatcc ccaccgtctg cctggggacg gaggagggga gcatttccat
     3061 ttataaaagc agccaaggct ccaagaaggt gcggctccag cacttcttca ctcccgagaa
     3121 atccacggtc atgagcttgg cctgcacgcc gcagagcctg tacgccggcc tggtcaacgg
     3181 ggccgtggcc atctacgcca gagcggacga tggatcctgg aattccgaac ctcaaacagt
     3241 gatacaatta ggcgtcctcc cagttcgaag tctgctaatg atggaagaca cactgtgggc
     3301 ggcgtctgga ggtcaagtgt ctgtaatcag tgtggagact cacgccgtgg agagccagct
     3361 ggaggcccac caggaggagg gcatggtggt ctcacacatg gccattgccg gtgtgggcat
     3421 ctggatcgcc ttcacctcag ggtccacgct ccgcctcttc cacacggaga cgctcaaaca
     3481 tctccaggac gtcaacgtcg ccaccccggt ccaccacatg ctgccaggac accagcggct
     3541 gtctgtgacc agcctgctcg tctgccacgg cttgctgatg gtcggcacca gcctgggcgt
     3601 cgtggtggcc ctgcccgtcc ctcgtctgca ggggatcccc aaggtgactg gtcgaggcct
     3661 ggtctcctac catgctcaca acgggcccgt caagttcctg gtcgtggcca cagccgcctc
     3721 caaggcggac agagacaagc ccagggacag cccgcccccc ggtgccgacc cccaggatga
     3781 agaccagagg gacccgctcc ccggtgaggg gcccgggccc tgcctgagcc gcagcagtcc
     3841 tgacgccgtc tggctggggg cttcgctggg ctccctcgcc caggccagcg acgtctcctc
     3901 cacgtctggg tccccgacgc cttcccaggg ctcgggctcc ctggggcccc gctcagagga
     3961 gagtttcatc caggaccccc tgcggctccc ctgcagctcc cccggccgag ggcggcgggc
     4021 caggaaggcc aaggccagct ccgtgctggt ggcctgtggg ggacagggcc accggcgggt
     4081 gagcaggaag gccaggcagc agcggccgga ggagttggcc tcgtccgtca tggtctggca
     4141 gatccccctg ctgaatgtgt gagccagggt cgagattcgg gggtggcctt tcagccaagt
     4201 cacacacccc gagcggtccc gccgcatcta tactgactgg gtgtgaatcg ccagccgtct
     4261 cggggccgaa aagtgcaata tcgtcacggg ggcatctccg gcagcccctc cctccacccc
     4321 aggcagggga gccccgtgtg aacgcgcatg aggaaggggg tggacgccgt gttcgagtgg
     4381 gtgggggtcc cgggaggatg ctccccctct gacccccgtg gtccttaata aacacgggac
     4441 gctgcagacc tgttctcgta gcctgtcacc tagagaactc acagactcag aactcacggg
     4501 gaaatacagc gtattcactg gtggaggggt ttattaacaa ttcttaaagt aattgtcctt
     4561 gattcagatt cactactttt atttatgttg tatatctttt aactccagaa tagaatttgt
     4621 aacaatgaag aaagccacgt aacacatacc aggccgggtg gtgttatgtg ctatctgagt
     4681 tgaactgagt tttccaaagt ggtataacac gtgtactgta tatttttaac aaagtagtat
     4741 ttttatatcg catttttcta ttaaaaaaaa ttaacaaagt tttagtcact atgttatccg
     4801 taacgtttca caaataacgt ttgctttgaa ccaaaatcct caacgcctgt caacatttag
     4861 actcaagcgt caatgccaaa atacccacgt tggagatgtg tgtgttttag tgtctcagga
     4921 gacgtagaag gtgtcttggt ccatcctttc ctgctgtgtt tgcatctgtc gaccaggagc
     4981 gcttctagct ttgaatgcat gtcctgaagg atgcacggtg ctggtcaggg cgggcgccgg
     5041 tgctggcggc ggacacagga cacaggaaag gtggcccttg gtcggcagac tggcacttag
     5101 ggccccttct gcgggcgtca tgcacgagtg gtccgtgagt tcgctgtgct ccacgtgtcg
     5161 ttatctatca atgttctact tactggatgg ttaagaaaaa caatgcaagt ccacccgaga
     5221 ttaatgtctc agcactttac aggtgactaa aaatgctaat tttatgactt tgccaaatat
     5281 tttccaaggt gcacgtgtgc ccccatgtga aagaaatatc tcccccagcc ttccttaaac
     5341 tattagctgc tatcttattt catgaataaa gtctttttat tt
//
LOCUS       XM_032618150            5480 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X6, mRNA.
ACCESSION   XM_032618150
VERSION     XM_032618150.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5480
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5480
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             217..4260
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X3"
                     /protein_id="XP_032474041.1"
                     /db_xref="GeneID:116746641"
                     /translation="MDQPGPPAPVREENEVKYDTNNNEEEEGEQLDLYGVDEAPEADR
                     RAPGAPEARDTGADSPASNTTIPATNTAAGSGHENGTGADTDAVAEPLRPGVPTRVNP
                     YSVIDITPLHEDQPPPPDPEAEGEGGGLHVPSGYSVPVPCGYAVPSGLPLLLPAYSSP
                     ALTPAGPAETQEGAEDSQLNSLSPEDPTNSEGPVHKEDSALARWVADPANTAWMENPE
                     EAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYEEQSDSESRNG
                     VPQSFLRSDHKKQLSHDLTRLKEHYEKKMRHLVANAVGAVEIQQLKHKHELKMQKLVK
                     AAKEGTKDGLEKTKAVVKRGRSFIRTKSFVSADHRPCLEEEQNLFIDVDCKHPEAVLT
                     PMPEGLSQQQVVRRYILGSVVDNEKSYVDALKRILEQYEKPLSEMEPKILSERKLKTV
                     FYRVKEVLQCHCMFQIALASRVAEWDSVEMIGDVFVASFSKSMLLDAYSEYVNNFSTA
                     VAILKKTCATKPAFLEFLKQCQEASPDRVTLYSLMMKPIQRFPQFILLLQDMLKNTPR
                     GHPDRLPLQMALTELETLAEKLNERKRDADQRCEIKQIAKAVNERYLNKLLSSGSRYL
                     VRSDDVVETVYNDRGEIVKTKERRLFMLNDVLMCATVSARTSHDSSALTSTGQRYLLK
                     WSVPLGHVEVIEYGGSEGAGENGRGPVVPAPESLAAVAGTKPNRVYVGPGQLYQDLQN
                     LAHDLNVVGQITQLVGNLKGNYQNLNQSVAHDWTSGLQRLILKKEEEIRAADCCRIQL
                     QLPGKQDKSGRPTFFTAVFNTFTAAIKESWINNLQMAKLALEEENHLGWFYVEDDGNQ
                     IKKERHPLLVGHMPVTVAKQQEFKIECAVYNPEPYLNNENQPDSFSTAHGFLWIGSCT
                     SQMGQIAIVSFQNSSPKVIECFNVESRVLCMVYVPAEDRPREPESTGGRVLGIPTVCL
                     GTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTPQSLYAGLVNGAVAIYARAD
                     DGSWNSEPQTVIQLGVLPVRSLLMMEDTLWAASGGQVSVISVETHAVESQLEAHQEEG
                     MVVSHMAIAGVGIWIAFTSGSTLRLFHTETLKHLQDVNVATPVHHMLPGHQRLSVTSL
                     LVCHGLLMVGTSLGVVVALPVPRLQGIPKVTGRGLVSYHAHNGPVKFLVVATAASKAD
                     RDKPRDSPPPGADPQDEDQRDPLPGEGPGPCLSRSSPDAVWLGASLGSLAQASDVSST
                     SGSPTPSQGSGSLGPRSEESFIQDPLRLPCSSPGRGRRARKAKASSVLVACGGQGHRR
                     VSRKARQQRPEELASSVMVWQIPLLNV"
     misc_feature    1429..1983
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1447..1449,1459..1461,1753..1755,1834..1839,
                     1846..1851,1855..1860,1867..1872,1879..1884,1891..1893,
                     1969..1971,1981..1983)
                     /gene="ARHGEF10"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    2050..2505
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    2827..4254
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 ggggccgcgg acaagaggag gggagaggtg tcctcggagg gacggagggt cggggttctg
       61 tcctggctgc aggaacatgt gtgaaattaa gcagagaatc aaggcgtcct gggccgggag
      121 gggtccggcc attgaaccca gctgcaaaaa tcaacgcctg gctgcaattc aaggtcccag
      181 atcctccgag cccaggagcg aggtggacgc ggcagcatgg accagccggg cccgccggct
      241 cccgtccggg aagagaatga agtcaagtac gacactaaca acaatgagga agaggagggg
      301 gaacagctgg atctctacgg cgtagatgaa gctccagaag cagacagacg ggctccgggt
      361 gcccccgagg ccagggacac gggagcagac agccccgcct ccaacaccac catccccgcc
      421 accaacaccg cggccggatc aggacatgaa aatggcacgg gagcggacac agacgccgtg
      481 gcggaaccac tgagacccgg ggtcccgacg agagtcaacc cctactccgt catcgacatc
      541 acacccctcc atgaggacca gccgccgcct ccggacccgg aggccgaggg ggagggcggg
      601 ggcctgcatg tgcccagcgg gtactcggta cctgtgccct gcggctacgc cgtgccctcc
      661 ggcctgcccc tgctgctgcc tgcctactcc agccctgccc tcacccccgc gggccccgca
      721 gagacacagg aaggagcaga agacagccag ttgaattcct tgagtcctga ggatccaaca
      781 aacagtgaag gtccagtcca taaggaggac agcgccctcg cccggtgggt tgcagatccg
      841 gccaatacag cctggatgga aaatccggaa gaagccattt atgatgacgt gccaagagaa
      901 aattcagact ctgagccaga tgaaatgatt tatgatgatg ttgagaatgg agatgaaggt
      961 ggaaacagct ctctggagta cgggtggagt tcgagcgaat ttgagagcta cgaggaacag
     1021 agcgactcgg agagcagaaa cggggtcccc cagtccttcc tgcgcagcga ccacaaaaag
     1081 caactttccc atgacctaac ccgcttaaag gagcactatg agaaaaagat gagacatttg
     1141 gtggcaaacg cggtgggcgc ggtagagatt cagcagctaa agcacaaaca tgaactgaag
     1201 atgcagaagc tcgtgaaggc cgccaaggag ggcaccaagg atggcctgga gaagacgaag
     1261 gctgtggtga agcggggccg ctccttcatc aggaccaagt ccttcgtctc tgcagaccac
     1321 agaccctgtc ttgaagagga acagaacttg ttcatcgacg tggactgcaa gcatccggaa
     1381 gctgtcctca ccccaatgcc cgaaggcttg tctcagcagc aggtcgtaag aagatatatt
     1441 ctgggttcgg ttgtcgacaa tgaaaagagc tacgtggatg ctcttaagag gattttggag
     1501 caatacgaga agccgctgtc tgagatggag cccaagatcc tgagcgagag gaagctgaag
     1561 acggtcttct accgggtcaa ggaggtcctg cagtgccact gcatgttcca gattgcgctg
     1621 gccagccgcg tggccgagtg ggactcggtg gagatgatcg gagacgtctt cgtggcctcg
     1681 ttttctaagt ccatgctgct ggatgcttac agcgaatatg tgaataattt tagcacagct
     1741 gtggcaatcc ttaagaaaac gtgcgctaca aaacctgctt ttcttgaatt tttaaagcag
     1801 tgccaggagg ccagccctga ccgcgtcacg ctgtacagcc tgatgatgaa gcccatccag
     1861 aggttcccgc agttcatcct gctgctccag gacatgctga agaacacgcc ccgaggacac
     1921 cccgacaggc tacccctcca gatggcgctg acggagctcg agacactggc ggagaaatta
     1981 aacgagagga agagggacgc tgatcaacgc tgcgaaatca aacagatagc aaaagccgta
     2041 aacgagcggt acctgaacaa gcttctcagc agcgggagtc gctacctcgt ccgctccgac
     2101 gacgtggtag aaactgtcta caacgaccgg ggggagatcg tgaaaaccaa ggagcgccgg
     2161 ctcttcatgc tgaatgacgt gctcatgtgc gccacggtca gcgcccgcac ctcccatgac
     2221 agcagtgccc tgacatcgac cggccagagg tatttgttga agtggagcgt ccctctcggg
     2281 cacgtggaag tgatagaata cggcggcagc gagggcgcgg gggagaatgg caggggtccc
     2341 gtggtgcccg cgcccgagag cctggcagcg gtggccggca ccaagccaaa cagagtttac
     2401 gtggggccgg ggcagctgta tcaagattta caaaatttgg cgcatgactt aaatgtcgtc
     2461 ggtcaaatca ctcaactggt tggaaacctc aaaggaaact atcagaattt gaaccagtcg
     2521 gtagcccacg actggacctc gggtttacag aggcttattc tgaagaagga agaggagatc
     2581 agagcggccg actgctgtcg gatccagtta cagctcccgg ggaaacagga caagtccggc
     2641 cggccgactt tcttcactgc tgtgttcaat accttcaccg ccgccatcaa ggagtcctgg
     2701 atcaacaacc tgcagatggc caagctcgcc ctcgaggaag agaaccacct gggctggttc
     2761 tacgtggagg acgacgggaa tcagatcaag aaggagaggc accccctcct cgtgggacac
     2821 atgcctgtga cggtggccaa gcagcaggag ttcaagatcg aatgtgccgt ttataatcct
     2881 gagccttacc taaataatga gaatcagcca gactcgtttt ccacggctca tggtttcctg
     2941 tggatcggaa gctgcaccag tcagatgggt cagatagcca tcgtctcctt tcaaaactcc
     3001 agccccaagg tcatcgagtg cttcaacgtg gagtcccgcg tcctgtgcat ggtgtacgtg
     3061 cccgcagagg acaggccccg ggagcccgag agcacggggg gccgagtgct gggcatcccc
     3121 accgtctgcc tggggacgga ggaggggagc atttccattt ataaaagcag ccaaggctcc
     3181 aagaaggtgc ggctccagca cttcttcact cccgagaaat ccacggtcat gagcttggcc
     3241 tgcacgccgc agagcctgta cgccggcctg gtcaacgggg ccgtggccat ctacgccaga
     3301 gcggacgatg gatcctggaa ttccgaacct caaacagtga tacaattagg cgtcctccca
     3361 gttcgaagtc tgctaatgat ggaagacaca ctgtgggcgg cgtctggagg tcaagtgtct
     3421 gtaatcagtg tggagactca cgccgtggag agccagctgg aggcccacca ggaggagggc
     3481 atggtggtct cacacatggc cattgccggt gtgggcatct ggatcgcctt cacctcaggg
     3541 tccacgctcc gcctcttcca cacggagacg ctcaaacatc tccaggacgt caacgtcgcc
     3601 accccggtcc accacatgct gccaggacac cagcggctgt ctgtgaccag cctgctcgtc
     3661 tgccacggct tgctgatggt cggcaccagc ctgggcgtcg tggtggccct gcccgtccct
     3721 cgtctgcagg ggatccccaa ggtgactggt cgaggcctgg tctcctacca tgctcacaac
     3781 gggcccgtca agttcctggt cgtggccaca gccgcctcca aggcggacag agacaagccc
     3841 agggacagcc cgccccccgg tgccgacccc caggatgaag accagaggga cccgctcccc
     3901 ggtgaggggc ccgggccctg cctgagccgc agcagtcctg acgccgtctg gctgggggct
     3961 tcgctgggct ccctcgccca ggccagcgac gtctcctcca cgtctgggtc cccgacgcct
     4021 tcccagggct cgggctccct ggggccccgc tcagaggaga gtttcatcca ggaccccctg
     4081 cggctcccct gcagctcccc cggccgaggg cggcgggcca ggaaggccaa ggccagctcc
     4141 gtgctggtgg cctgtggggg acagggccac cggcgggtga gcaggaaggc caggcagcag
     4201 cggccggagg agttggcctc gtccgtcatg gtctggcaga tccccctgct gaatgtgtga
     4261 gccagggtcg agattcgggg gtggcctttc agccaagtca cacaccccga gcggtcccgc
     4321 cgcatctata ctgactgggt gtgaatcgcc agccgtctcg gggccgaaaa gtgcaatatc
     4381 gtcacggggg catctccggc agcccctccc tccaccccag gcaggggagc cccgtgtgaa
     4441 cgcgcatgag gaagggggtg gacgccgtgt tcgagtgggt gggggtcccg ggaggatgct
     4501 ccccctctga cccccgtggt ccttaataaa cacgggacgc tgcagacctg ttctcgtagc
     4561 ctgtcaccta gagaactcac agactcagaa ctcacgggga aatacagcgt attcactggt
     4621 ggaggggttt attaacaatt cttaaagtaa ttgtccttga ttcagattca ctacttttat
     4681 ttatgttgta tatcttttaa ctccagaata gaatttgtaa caatgaagaa agccacgtaa
     4741 cacataccag gccgggtggt gttatgtgct atctgagttg aactgagttt tccaaagtgg
     4801 tataacacgt gtactgtata tttttaacaa agtagtattt ttatatcgca tttttctatt
     4861 aaaaaaaatt aacaaagttt tagtcactat gttatccgta acgtttcaca aataacgttt
     4921 gctttgaacc aaaatcctca acgcctgtca acatttagac tcaagcgtca atgccaaaat
     4981 acccacgttg gagatgtgtg tgttttagtg tctcaggaga cgtagaaggt gtcttggtcc
     5041 atcctttcct gctgtgtttg catctgtcga ccaggagcgc ttctagcttt gaatgcatgt
     5101 cctgaaggat gcacggtgct ggtcagggcg ggcgccggtg ctggcggcgg acacaggaca
     5161 caggaaaggt ggcccttggt cggcagactg gcacttaggg ccccttctgc gggcgtcatg
     5221 cacgagtggt ccgtgagttc gctgtgctcc acgtgtcgtt atctatcaat gttctactta
     5281 ctggatggtt aagaaaaaca atgcaagtcc acccgagatt aatgtctcag cactttacag
     5341 gtgactaaaa atgctaattt tatgactttg ccaaatattt tccaaggtgc acgtgtgccc
     5401 ccatgtgaaa gaaatatctc ccccagcctt ccttaaacta ttagctgcta tcttatttca
     5461 tgaataaagt ctttttattt
//
LOCUS       XM_032618151            5417 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X7, mRNA.
ACCESSION   XM_032618151
VERSION     XM_032618151.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5417
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5417
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 long SRA reads, 1
                     Protein, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             217..4197
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X4"
                     /protein_id="XP_032474042.1"
                     /db_xref="GeneID:116746641"
                     /translation="MDQPGPPAPVREGNRLQAGGGAENEVKYDTNNNEEEEGEQLDLY
                     GVDEAPEADRRAPGAPEARDTGADSPASNTTIPATNTAAGSGHENGTGADTDAVAEPL
                     RPGVPTRVNPYSVIDITPLHEDQPPPPDPEAEGEGGGLHVPSGYSVPVPCGYAVPSGL
                     PLLLPAYSSPALTPAGPAETQEGAEDSQLNSLSPEDPTNSEGPVHKEDSALARWVADP
                     ANTAWMENPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYE
                     EQSDSESRNGVPQSFLRSDHKKQLSHDLTRLKEHYEKKMRHLVANAVGAVEIQQLKHK
                     HELKMQKLVKAAKEGTKDGLEKTKAVVKRGRSFIRTKSFVSADHRPCLEEEQNLFIDV
                     DCKHPEAVLTPMPEGLSQQQVVRRYILGSVVDNEKSYVDALKRILEQYEKPLSEMEPK
                     ILSERKLKTVFYRVKEVLQCHCMFQIALASRVAEWDSVEMIGDVFVASFSKSMLLDAY
                     SEYVNNFSTAVAILKKTCATKPAFLEFLKDMLKNTPRGHPDRLPLQMALTELETLAEK
                     LNERKRDADQRCEIKQIAKAVNERYLNKLLSSGSRYLVRSDDVVETVYNDRGEIVKTK
                     ERRLFMLNDVLMCATVSARTSHDSSALTSTGQRYLLKWSVPLGHVEVIEYGGSEGAGE
                     NGRGPVVPAPESLAAVAGTKPNRVYVGPGQLYQDLQNLAHDLNVVGQITQLVGNLKGN
                     YQNLNQSVAHDWTSGLQRLILKKEEEIRAADCCRIQLQLPGKQDKSGRPTFFTAVFNT
                     FTAAIKESWINNLQMAKLALEEENHLGWFYVEDDGNQIKKERHPLLVGHMPVTVAKQQ
                     EFKIECAVYNPEPYLNNENQPDSFSTAHGFLWIGSCTSQMGQIAIVSFQNSSPKVIEC
                     FNVESRVLCMVYVPAEDRPREPESTGGRVLGIPTVCLGTEEGSISIYKSSQGSKKVRL
                     QHFFTPEKSTVMSLACTPQSLYAGLVNGAVAIYARADDGSWNSEPQTVIQLGVLPVRS
                     LLMMEDTLWAASGGQVSVISVETHAVESQLEAHQEEGMVVSHMAIAGVGIWIAFTSGS
                     TLRLFHTETLKHLQDVNVATPVHHMLPGHQRLSVTSLLVCHGLLMVGTSLGVVVALPV
                     PRLQGIPKVTGRGLVSYHAHNGPVKFLVVATAASKADRDKPRDSPPPGADPQDEDQRD
                     PLPGEGPGPCLSRSSPDAVWLGASLGSLAQASDVSSTSGSPTPSQGSGSLGPRSEESF
                     IQDPLRLPCSSPGRGRRARKAKASSVLVACGGQGHRRVSRKARQQRPEELASSVMVWQ
                     IPLLNV"
     misc_feature    1459..1920
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    1987..2442
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    2764..4191
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 ggggccgcgg acaagaggag gggagaggtg tcctcggagg gacggagggt cggggttctg
       61 tcctggctgc aggaacatgt gtgaaattaa gcagagaatc aaggcgtcct gggccgggag
      121 gggtccggcc attgaaccca gctgcaaaaa tcaacgcctg gctgcaattc aaggtcccag
      181 atcctccgag cccaggagcg aggtggacgc ggcagcatgg accagccggg cccgccggct
      241 cccgtccggg aaggtaacag gttgcaggcc ggtggcgggg cagagaatga agtcaagtac
      301 gacactaaca acaatgagga agaggagggg gaacagctgg atctctacgg cgtagatgaa
      361 gctccagaag cagacagacg ggctccgggt gcccccgagg ccagggacac gggagcagac
      421 agccccgcct ccaacaccac catccccgcc accaacaccg cggccggatc aggacatgaa
      481 aatggcacgg gagcggacac agacgccgtg gcggaaccac tgagacccgg ggtcccgacg
      541 agagtcaacc cctactccgt catcgacatc acacccctcc atgaggacca gccgccgcct
      601 ccggacccgg aggccgaggg ggagggcggg ggcctgcatg tgcccagcgg gtactcggta
      661 cctgtgccct gcggctacgc cgtgccctcc ggcctgcccc tgctgctgcc tgcctactcc
      721 agccctgccc tcacccccgc gggccccgca gagacacagg aaggagcaga agacagccag
      781 ttgaattcct tgagtcctga ggatccaaca aacagtgaag gtccagtcca taaggaggac
      841 agcgccctcg cccggtgggt tgcagatccg gccaatacag cctggatgga aaatccggaa
      901 gaagccattt atgatgacgt gccaagagaa aattcagact ctgagccaga tgaaatgatt
      961 tatgatgatg ttgagaatgg agatgaaggt ggaaacagct ctctggagta cgggtggagt
     1021 tcgagcgaat ttgagagcta cgaggaacag agcgactcgg agagcagaaa cggggtcccc
     1081 cagtccttcc tgcgcagcga ccacaaaaag caactttccc atgacctaac ccgcttaaag
     1141 gagcactatg agaaaaagat gagacatttg gtggcaaacg cggtgggcgc ggtagagatt
     1201 cagcagctaa agcacaaaca tgaactgaag atgcagaagc tcgtgaaggc cgccaaggag
     1261 ggcaccaagg atggcctgga gaagacgaag gctgtggtga agcggggccg ctccttcatc
     1321 aggaccaagt ccttcgtctc tgcagaccac agaccctgtc ttgaagagga acagaacttg
     1381 ttcatcgacg tggactgcaa gcatccggaa gctgtcctca ccccaatgcc cgaaggcttg
     1441 tctcagcagc aggtcgtaag aagatatatt ctgggttcgg ttgtcgacaa tgaaaagagc
     1501 tacgtggatg ctcttaagag gattttggag caatacgaga agccgctgtc tgagatggag
     1561 cccaagatcc tgagcgagag gaagctgaag acggtcttct accgggtcaa ggaggtcctg
     1621 cagtgccact gcatgttcca gattgcgctg gccagccgcg tggccgagtg ggactcggtg
     1681 gagatgatcg gagacgtctt cgtggcctcg ttttctaagt ccatgctgct ggatgcttac
     1741 agcgaatatg tgaataattt tagcacagct gtggcaatcc ttaagaaaac gtgcgctaca
     1801 aaacctgctt ttcttgaatt tttaaaggac atgctgaaga acacgccccg aggacacccc
     1861 gacaggctac ccctccagat ggcgctgacg gagctcgaga cactggcgga gaaattaaac
     1921 gagaggaaga gggacgctga tcaacgctgc gaaatcaaac agatagcaaa agccgtaaac
     1981 gagcggtacc tgaacaagct tctcagcagc gggagtcgct acctcgtccg ctccgacgac
     2041 gtggtagaaa ctgtctacaa cgaccggggg gagatcgtga aaaccaagga gcgccggctc
     2101 ttcatgctga atgacgtgct catgtgcgcc acggtcagcg cccgcacctc ccatgacagc
     2161 agtgccctga catcgaccgg ccagaggtat ttgttgaagt ggagcgtccc tctcgggcac
     2221 gtggaagtga tagaatacgg cggcagcgag ggcgcggggg agaatggcag gggtcccgtg
     2281 gtgcccgcgc ccgagagcct ggcagcggtg gccggcacca agccaaacag agtttacgtg
     2341 gggccggggc agctgtatca agatttacaa aatttggcgc atgacttaaa tgtcgtcggt
     2401 caaatcactc aactggttgg aaacctcaaa ggaaactatc agaatttgaa ccagtcggta
     2461 gcccacgact ggacctcggg tttacagagg cttattctga agaaggaaga ggagatcaga
     2521 gcggccgact gctgtcggat ccagttacag ctcccgggga aacaggacaa gtccggccgg
     2581 ccgactttct tcactgctgt gttcaatacc ttcaccgccg ccatcaagga gtcctggatc
     2641 aacaacctgc agatggccaa gctcgccctc gaggaagaga accacctggg ctggttctac
     2701 gtggaggacg acgggaatca gatcaagaag gagaggcacc ccctcctcgt gggacacatg
     2761 cctgtgacgg tggccaagca gcaggagttc aagatcgaat gtgccgttta taatcctgag
     2821 ccttacctaa ataatgagaa tcagccagac tcgttttcca cggctcatgg tttcctgtgg
     2881 atcggaagct gcaccagtca gatgggtcag atagccatcg tctcctttca aaactccagc
     2941 cccaaggtca tcgagtgctt caacgtggag tcccgcgtcc tgtgcatggt gtacgtgccc
     3001 gcagaggaca ggccccggga gcccgagagc acggggggcc gagtgctggg catccccacc
     3061 gtctgcctgg ggacggagga ggggagcatt tccatttata aaagcagcca aggctccaag
     3121 aaggtgcggc tccagcactt cttcactccc gagaaatcca cggtcatgag cttggcctgc
     3181 acgccgcaga gcctgtacgc cggcctggtc aacggggccg tggccatcta cgccagagcg
     3241 gacgatggat cctggaattc cgaacctcaa acagtgatac aattaggcgt cctcccagtt
     3301 cgaagtctgc taatgatgga agacacactg tgggcggcgt ctggaggtca agtgtctgta
     3361 atcagtgtgg agactcacgc cgtggagagc cagctggagg cccaccagga ggagggcatg
     3421 gtggtctcac acatggccat tgccggtgtg ggcatctgga tcgccttcac ctcagggtcc
     3481 acgctccgcc tcttccacac ggagacgctc aaacatctcc aggacgtcaa cgtcgccacc
     3541 ccggtccacc acatgctgcc aggacaccag cggctgtctg tgaccagcct gctcgtctgc
     3601 cacggcttgc tgatggtcgg caccagcctg ggcgtcgtgg tggccctgcc cgtccctcgt
     3661 ctgcagggga tccccaaggt gactggtcga ggcctggtct cctaccatgc tcacaacggg
     3721 cccgtcaagt tcctggtcgt ggccacagcc gcctccaagg cggacagaga caagcccagg
     3781 gacagcccgc cccccggtgc cgacccccag gatgaagacc agagggaccc gctccccggt
     3841 gaggggcccg ggccctgcct gagccgcagc agtcctgacg ccgtctggct gggggcttcg
     3901 ctgggctccc tcgcccaggc cagcgacgtc tcctccacgt ctgggtcccc gacgccttcc
     3961 cagggctcgg gctccctggg gccccgctca gaggagagtt tcatccagga ccccctgcgg
     4021 ctcccctgca gctcccccgg ccgagggcgg cgggccagga aggccaaggc cagctccgtg
     4081 ctggtggcct gtgggggaca gggccaccgg cgggtgagca ggaaggccag gcagcagcgg
     4141 ccggaggagt tggcctcgtc cgtcatggtc tggcagatcc ccctgctgaa tgtgtgagcc
     4201 agggtcgaga ttcgggggtg gcctttcagc caagtcacac accccgagcg gtcccgccgc
     4261 atctatactg actgggtgtg aatcgccagc cgtctcgggg ccgaaaagtg caatatcgtc
     4321 acgggggcat ctccggcagc ccctccctcc accccaggca ggggagcccc gtgtgaacgc
     4381 gcatgaggaa gggggtggac gccgtgttcg agtgggtggg ggtcccggga ggatgctccc
     4441 cctctgaccc ccgtggtcct taataaacac gggacgctgc agacctgttc tcgtagcctg
     4501 tcacctagag aactcacaga ctcagaactc acggggaaat acagcgtatt cactggtgga
     4561 ggggtttatt aacaattctt aaagtaattg tccttgattc agattcacta cttttattta
     4621 tgttgtatat cttttaactc cagaatagaa tttgtaacaa tgaagaaagc cacgtaacac
     4681 ataccaggcc gggtggtgtt atgtgctatc tgagttgaac tgagttttcc aaagtggtat
     4741 aacacgtgta ctgtatattt ttaacaaagt agtattttta tatcgcattt ttctattaaa
     4801 aaaaattaac aaagttttag tcactatgtt atccgtaacg tttcacaaat aacgtttgct
     4861 ttgaaccaaa atcctcaacg cctgtcaaca tttagactca agcgtcaatg ccaaaatacc
     4921 cacgttggag atgtgtgtgt tttagtgtct caggagacgt agaaggtgtc ttggtccatc
     4981 ctttcctgct gtgtttgcat ctgtcgacca ggagcgcttc tagctttgaa tgcatgtcct
     5041 gaaggatgca cggtgctggt cagggcgggc gccggtgctg gcggcggaca caggacacag
     5101 gaaaggtggc ccttggtcgg cagactggca cttagggccc cttctgcggg cgtcatgcac
     5161 gagtggtccg tgagttcgct gtgctccacg tgtcgttatc tatcaatgtt ctacttactg
     5221 gatggttaag aaaaacaatg caagtccacc cgagattaat gtctcagcac tttacaggtg
     5281 actaaaaatg ctaattttat gactttgcca aatattttcc aaggtgcacg tgtgccccca
     5341 tgtgaaagaa atatctcccc cagccttcct taaactatta gctgctatct tatttcatga
     5401 ataaagtctt tttattt
//
LOCUS       XM_032618152            5393 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X8, mRNA.
ACCESSION   XM_032618152
VERSION     XM_032618152.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5393
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5393
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 15
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             217..4173
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X5"
                     /protein_id="XP_032474043.1"
                     /db_xref="GeneID:116746641"
                     /translation="MDQPGPPAPVREGNRLQAGGGAENEVKYDTNNNEEEEGEQLDLY
                     GVDEAPEADRRAPGAPEARDTGADSPASNTTIPATNTAAGSGHENGTGADTDAVAEPL
                     RPGVPTRVNPYSVIDITPLHEDQPPPPDPEAEGEGGGLHVPSGYSVPVPCGYAVPSGL
                     PLLLPAYSSPALTPAGPAETQEGAEDSQLNSLSPEDPTNSEGPVHKEDSALARWVADP
                     ANTAWMENPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYE
                     EQSDSESRNGVPQSFLRSDHKKQMQKLVKAAKEGTKDGLEKTKAVVKRGRSFIRTKSF
                     VSADHRPCLEEEQNLFIDVDCKHPEAVLTPMPEGLSQQQVVRRYILGSVVDNEKSYVD
                     ALKRILEQYEKPLSEMEPKILSERKLKTVFYRVKEVLQCHCMFQIALASRVAEWDSVE
                     MIGDVFVASFSKSMLLDAYSEYVNNFSTAVAILKKTCATKPAFLEFLKQCQEASPDRV
                     TLYSLMMKPIQRFPQFILLLQDMLKNTPRGHPDRLPLQMALTELETLAEKLNERKRDA
                     DQRCEIKQIAKAVNERYLNKLLSSGSRYLVRSDDVVETVYNDRGEIVKTKERRLFMLN
                     DVLMCATVSARTSHDSSALTSTGQRYLLKWSVPLGHVEVIEYGGSEGAGENGRGPVVP
                     APESLAAVAGTKPNRVYVGPGQLYQDLQNLAHDLNVVGQITQLVGNLKGNYQNLNQSV
                     AHDWTSGLQRLILKKEEEIRAADCCRIQLQLPGKQDKSGRPTFFTAVFNTFTAAIKES
                     WINNLQMAKLALEEENHLGWFYVEDDGNQIKKERHPLLVGHMPVTVAKQQEFKIECAV
                     YNPEPYLNNENQPDSFSTAHGFLWIGSCTSQMGQIAIVSFQNSSPKVIECFNVESRVL
                     CMVYVPAEDRPREPESTGGRVLGIPTVCLGTEEGSISIYKSSQGSKKVRLQHFFTPEK
                     STVMSLACTPQSLYAGLVNGAVAIYARADDGSWNSEPQTVIQLGVLPVRSLLMMEDTL
                     WAASGGQVSVISVETHAVESQLEAHQEEGMVVSHMAIAGVGIWIAFTSGSTLRLFHTE
                     TLKHLQDVNVATPVHHMLPGHQRLSVTSLLVCHGLLMVGTSLGVVVALPVPRLQGIPK
                     VTGRGLVSYHAHNGPVKFLVVATAASKADRDKPRDSPPPGADPQDEDQRDPLPGEGPG
                     PCLSRSSPDAVWLGASLGSLAQASDVSSTSGSPTPSQGSGSLGPRSEESFIQDPLRLP
                     CSSPGRGRRARKAKASSVLVACGGQGHRRVSRKARQQRPEELASSVMVWQIPLLNV"
     misc_feature    1342..1896
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(1360..1362,1372..1374,1666..1668,1747..1752,
                     1759..1764,1768..1773,1780..1785,1792..1797,1804..1806,
                     1882..1884,1894..1896)
                     /gene="ARHGEF10"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1963..2418
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    2740..4167
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 ggggccgcgg acaagaggag gggagaggtg tcctcggagg gacggagggt cggggttctg
       61 tcctggctgc aggaacatgt gtgaaattaa gcagagaatc aaggcgtcct gggccgggag
      121 gggtccggcc attgaaccca gctgcaaaaa tcaacgcctg gctgcaattc aaggtcccag
      181 atcctccgag cccaggagcg aggtggacgc ggcagcatgg accagccggg cccgccggct
      241 cccgtccggg aaggtaacag gttgcaggcc ggtggcgggg cagagaatga agtcaagtac
      301 gacactaaca acaatgagga agaggagggg gaacagctgg atctctacgg cgtagatgaa
      361 gctccagaag cagacagacg ggctccgggt gcccccgagg ccagggacac gggagcagac
      421 agccccgcct ccaacaccac catccccgcc accaacaccg cggccggatc aggacatgaa
      481 aatggcacgg gagcggacac agacgccgtg gcggaaccac tgagacccgg ggtcccgacg
      541 agagtcaacc cctactccgt catcgacatc acacccctcc atgaggacca gccgccgcct
      601 ccggacccgg aggccgaggg ggagggcggg ggcctgcatg tgcccagcgg gtactcggta
      661 cctgtgccct gcggctacgc cgtgccctcc ggcctgcccc tgctgctgcc tgcctactcc
      721 agccctgccc tcacccccgc gggccccgca gagacacagg aaggagcaga agacagccag
      781 ttgaattcct tgagtcctga ggatccaaca aacagtgaag gtccagtcca taaggaggac
      841 agcgccctcg cccggtgggt tgcagatccg gccaatacag cctggatgga aaatccggaa
      901 gaagccattt atgatgacgt gccaagagaa aattcagact ctgagccaga tgaaatgatt
      961 tatgatgatg ttgagaatgg agatgaaggt ggaaacagct ctctggagta cgggtggagt
     1021 tcgagcgaat ttgagagcta cgaggaacag agcgactcgg agagcagaaa cggggtcccc
     1081 cagtccttcc tgcgcagcga ccacaaaaag caaatgcaga agctcgtgaa ggccgccaag
     1141 gagggcacca aggatggcct ggagaagacg aaggctgtgg tgaagcgggg ccgctccttc
     1201 atcaggacca agtccttcgt ctctgcagac cacagaccct gtcttgaaga ggaacagaac
     1261 ttgttcatcg acgtggactg caagcatccg gaagctgtcc tcaccccaat gcccgaaggc
     1321 ttgtctcagc agcaggtcgt aagaagatat attctgggtt cggttgtcga caatgaaaag
     1381 agctacgtgg atgctcttaa gaggattttg gagcaatacg agaagccgct gtctgagatg
     1441 gagcccaaga tcctgagcga gaggaagctg aagacggtct tctaccgggt caaggaggtc
     1501 ctgcagtgcc actgcatgtt ccagattgcg ctggccagcc gcgtggccga gtgggactcg
     1561 gtggagatga tcggagacgt cttcgtggcc tcgttttcta agtccatgct gctggatgct
     1621 tacagcgaat atgtgaataa ttttagcaca gctgtggcaa tccttaagaa aacgtgcgct
     1681 acaaaacctg cttttcttga atttttaaag cagtgccagg aggccagccc tgaccgcgtc
     1741 acgctgtaca gcctgatgat gaagcccatc cagaggttcc cgcagttcat cctgctgctc
     1801 caggacatgc tgaagaacac gccccgagga caccccgaca ggctacccct ccagatggcg
     1861 ctgacggagc tcgagacact ggcggagaaa ttaaacgaga ggaagaggga cgctgatcaa
     1921 cgctgcgaaa tcaaacagat agcaaaagcc gtaaacgagc ggtacctgaa caagcttctc
     1981 agcagcggga gtcgctacct cgtccgctcc gacgacgtgg tagaaactgt ctacaacgac
     2041 cggggggaga tcgtgaaaac caaggagcgc cggctcttca tgctgaatga cgtgctcatg
     2101 tgcgccacgg tcagcgcccg cacctcccat gacagcagtg ccctgacatc gaccggccag
     2161 aggtatttgt tgaagtggag cgtccctctc gggcacgtgg aagtgataga atacggcggc
     2221 agcgagggcg cgggggagaa tggcaggggt cccgtggtgc ccgcgcccga gagcctggca
     2281 gcggtggccg gcaccaagcc aaacagagtt tacgtggggc cggggcagct gtatcaagat
     2341 ttacaaaatt tggcgcatga cttaaatgtc gtcggtcaaa tcactcaact ggttggaaac
     2401 ctcaaaggaa actatcagaa tttgaaccag tcggtagccc acgactggac ctcgggttta
     2461 cagaggctta ttctgaagaa ggaagaggag atcagagcgg ccgactgctg tcggatccag
     2521 ttacagctcc cggggaaaca ggacaagtcc ggccggccga ctttcttcac tgctgtgttc
     2581 aataccttca ccgccgccat caaggagtcc tggatcaaca acctgcagat ggccaagctc
     2641 gccctcgagg aagagaacca cctgggctgg ttctacgtgg aggacgacgg gaatcagatc
     2701 aagaaggaga ggcaccccct cctcgtggga cacatgcctg tgacggtggc caagcagcag
     2761 gagttcaaga tcgaatgtgc cgtttataat cctgagcctt acctaaataa tgagaatcag
     2821 ccagactcgt tttccacggc tcatggtttc ctgtggatcg gaagctgcac cagtcagatg
     2881 ggtcagatag ccatcgtctc ctttcaaaac tccagcccca aggtcatcga gtgcttcaac
     2941 gtggagtccc gcgtcctgtg catggtgtac gtgcccgcag aggacaggcc ccgggagccc
     3001 gagagcacgg ggggccgagt gctgggcatc cccaccgtct gcctggggac ggaggagggg
     3061 agcatttcca tttataaaag cagccaaggc tccaagaagg tgcggctcca gcacttcttc
     3121 actcccgaga aatccacggt catgagcttg gcctgcacgc cgcagagcct gtacgccggc
     3181 ctggtcaacg gggccgtggc catctacgcc agagcggacg atggatcctg gaattccgaa
     3241 cctcaaacag tgatacaatt aggcgtcctc ccagttcgaa gtctgctaat gatggaagac
     3301 acactgtggg cggcgtctgg aggtcaagtg tctgtaatca gtgtggagac tcacgccgtg
     3361 gagagccagc tggaggccca ccaggaggag ggcatggtgg tctcacacat ggccattgcc
     3421 ggtgtgggca tctggatcgc cttcacctca gggtccacgc tccgcctctt ccacacggag
     3481 acgctcaaac atctccagga cgtcaacgtc gccaccccgg tccaccacat gctgccagga
     3541 caccagcggc tgtctgtgac cagcctgctc gtctgccacg gcttgctgat ggtcggcacc
     3601 agcctgggcg tcgtggtggc cctgcccgtc cctcgtctgc aggggatccc caaggtgact
     3661 ggtcgaggcc tggtctccta ccatgctcac aacgggcccg tcaagttcct ggtcgtggcc
     3721 acagccgcct ccaaggcgga cagagacaag cccagggaca gcccgccccc cggtgccgac
     3781 ccccaggatg aagaccagag ggacccgctc cccggtgagg ggcccgggcc ctgcctgagc
     3841 cgcagcagtc ctgacgccgt ctggctgggg gcttcgctgg gctccctcgc ccaggccagc
     3901 gacgtctcct ccacgtctgg gtccccgacg ccttcccagg gctcgggctc cctggggccc
     3961 cgctcagagg agagtttcat ccaggacccc ctgcggctcc cctgcagctc ccccggccga
     4021 gggcggcggg ccaggaaggc caaggccagc tccgtgctgg tggcctgtgg gggacagggc
     4081 caccggcggg tgagcaggaa ggccaggcag cagcggccgg aggagttggc ctcgtccgtc
     4141 atggtctggc agatccccct gctgaatgtg tgagccaggg tcgagattcg ggggtggcct
     4201 ttcagccaag tcacacaccc cgagcggtcc cgccgcatct atactgactg ggtgtgaatc
     4261 gccagccgtc tcggggccga aaagtgcaat atcgtcacgg gggcatctcc ggcagcccct
     4321 ccctccaccc caggcagggg agccccgtgt gaacgcgcat gaggaagggg gtggacgccg
     4381 tgttcgagtg ggtgggggtc ccgggaggat gctccccctc tgacccccgt ggtccttaat
     4441 aaacacggga cgctgcagac ctgttctcgt agcctgtcac ctagagaact cacagactca
     4501 gaactcacgg ggaaatacag cgtattcact ggtggagggg tttattaaca attcttaaag
     4561 taattgtcct tgattcagat tcactacttt tatttatgtt gtatatcttt taactccaga
     4621 atagaatttg taacaatgaa gaaagccacg taacacatac caggccgggt ggtgttatgt
     4681 gctatctgag ttgaactgag ttttccaaag tggtataaca cgtgtactgt atatttttaa
     4741 caaagtagta tttttatatc gcatttttct attaaaaaaa attaacaaag ttttagtcac
     4801 tatgttatcc gtaacgtttc acaaataacg tttgctttga accaaaatcc tcaacgcctg
     4861 tcaacattta gactcaagcg tcaatgccaa aatacccacg ttggagatgt gtgtgtttta
     4921 gtgtctcagg agacgtagaa ggtgtcttgg tccatccttt cctgctgtgt ttgcatctgt
     4981 cgaccaggag cgcttctagc tttgaatgca tgtcctgaag gatgcacggt gctggtcagg
     5041 gcgggcgccg gtgctggcgg cggacacagg acacaggaaa ggtggccctt ggtcggcaga
     5101 ctggcactta gggccccttc tgcgggcgtc atgcacgagt ggtccgtgag ttcgctgtgc
     5161 tccacgtgtc gttatctatc aatgttctac ttactggatg gttaagaaaa acaatgcaag
     5221 tccacccgag attaatgtct cagcacttta caggtgacta aaaatgctaa ttttatgact
     5281 ttgccaaata ttttccaagg tgcacgtgtg cccccatgtg aaagaaatat ctcccccagc
     5341 cttccttaaa ctattagctg ctatcttatt tcatgaataa agtcttttta ttt
//
LOCUS       XM_032618153            4712 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rho guanine nucleotide exchange factor 10
            (ARHGEF10), transcript variant X9, mRNA.
ACCESSION   XM_032618153
VERSION     XM_032618153.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4712
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4712
                     /gene="ARHGEF10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746641"
     CDS             88..3492
                     /gene="ARHGEF10"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10
                     isoform X6"
                     /protein_id="XP_032474044.1"
                     /db_xref="GeneID:116746641"
                     /translation="MENPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGW
                     SSSEFESYEEQSDSESRNGVPQSFLRSDHKKQLSHDLTRLKEHYEKKMRHLVANAVGA
                     VEIQQLKHKHELKMQKLVKAAKEGTKDGLEKTKAVVKRGRSFIRTKSFVSADHRPCLE
                     EEQNLFIDVDCKHPEAVLTPMPEGLSQQQVVRRYILGSVVDNEKSYVDALKRILEQYE
                     KPLSEMEPKILSERKLKTVFYRVKEVLQCHCMFQIALASRVAEWDSVEMIGDVFVASF
                     SKSMLLDAYSEYVNNFSTAVAILKKTCATKPAFLEFLKQCQEASPDRVTLYSLMMKPI
                     QRFPQFILLLQDMLKNTPRGHPDRLPLQMALTELETLAEKLNERKRDADQRCEIKQIA
                     KAVNERYLNKLLSSGSRYLVRSDDVVETVYNDRGEIVKTKERRLFMLNDVLMCATVSA
                     RTSHDSSALTSTGQRYLLKWSVPLGHVEVIEYGGSEGAGENGRGPVVPAPESLAAVAG
                     TKPNRVYVGPGQLYQDLQNLAHDLNVVGQITQLVGNLKGNYQNLNQSVAHDWTSGLQR
                     LILKKEEEIRAADCCRIQLQLPGKQDKSGRPTFFTAVFNTFTAAIKESWINNLQMAKL
                     ALEEENHLGWFYVEDDGNQIKKERHPLLVGHMPVTVAKQQEFKIECAVYNPEPYLNNE
                     NQPDSFSTAHGFLWIGSCTSQMGQIAIVSFQNSSPKVIECFNVESRVLCMVYVPAEDR
                     PREPESTGGRVLGIPTVCLGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTP
                     QSLYAGLVNGAVAIYARADDGSWNSEPQTVIQLGVLPVRSLLMMEDTLWAASGGQVSV
                     ISVETHAVESQLEAHQEEGMVVSHMAIAGVGIWIAFTSGSTLRLFHTETLKHLQDVNV
                     ATPVHHMLPGHQRLSVTSLLVCHGLLMVGTSLGVVVALPVPRLQGIPKVTGRGLVSYH
                     AHNGPVKFLVVATAASKADRDKPRDSPPPGADPQDEDQRDPLPGEGPGPCLSRSSPDA
                     VWLGASLGSLAQASDVSSTSGSPTPSQGSGSLGPRSEESFIQDPLRLPCSSPGRGRRA
                     RKAKASSVLVACGGQGHRRVSRKARQQRPEELASSVMVWQIPLLNV"
     misc_feature    661..1215
                     /gene="ARHGEF10"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(679..681,691..693,985..987,1066..1071,1078..1083,
                     1087..1092,1099..1104,1111..1116,1123..1125,1201..1203,
                     1213..1215)
                     /gene="ARHGEF10"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1282..1737
                     /gene="ARHGEF10"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:465965"
     misc_feature    2059..3486
                     /gene="ARHGEF10"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:465964"
ORIGIN      
        1 gtcctgagga tccaacaaac aggtccagtc cataaggagg acagcgccct cgcccggtgg
       61 gttgcagatc cggccaatac agcctggatg gaaaatccgg aagaagccat ttatgatgac
      121 gtgccaagag aaaattcaga ctctgagcca gatgaaatga tttatgatga tgttgagaat
      181 ggagatgaag gtggaaacag ctctctggag tacgggtgga gttcgagcga atttgagagc
      241 tacgaggaac agagcgactc ggagagcaga aacggggtcc cccagtcctt cctgcgcagc
      301 gaccacaaaa agcaactttc ccatgaccta acccgcttaa aggagcacta tgagaaaaag
      361 atgagacatt tggtggcaaa cgcggtgggc gcggtagaga ttcagcagct aaagcacaaa
      421 catgaactga agatgcagaa gctcgtgaag gccgccaagg agggcaccaa ggatggcctg
      481 gagaagacga aggctgtggt gaagcggggc cgctccttca tcaggaccaa gtccttcgtc
      541 tctgcagacc acagaccctg tcttgaagag gaacagaact tgttcatcga cgtggactgc
      601 aagcatccgg aagctgtcct caccccaatg cccgaaggct tgtctcagca gcaggtcgta
      661 agaagatata ttctgggttc ggttgtcgac aatgaaaaga gctacgtgga tgctcttaag
      721 aggattttgg agcaatacga gaagccgctg tctgagatgg agcccaagat cctgagcgag
      781 aggaagctga agacggtctt ctaccgggtc aaggaggtcc tgcagtgcca ctgcatgttc
      841 cagattgcgc tggccagccg cgtggccgag tgggactcgg tggagatgat cggagacgtc
      901 ttcgtggcct cgttttctaa gtccatgctg ctggatgctt acagcgaata tgtgaataat
      961 tttagcacag ctgtggcaat ccttaagaaa acgtgcgcta caaaacctgc ttttcttgaa
     1021 tttttaaagc agtgccagga ggccagccct gaccgcgtca cgctgtacag cctgatgatg
     1081 aagcccatcc agaggttccc gcagttcatc ctgctgctcc aggacatgct gaagaacacg
     1141 ccccgaggac accccgacag gctacccctc cagatggcgc tgacggagct cgagacactg
     1201 gcggagaaat taaacgagag gaagagggac gctgatcaac gctgcgaaat caaacagata
     1261 gcaaaagccg taaacgagcg gtacctgaac aagcttctca gcagcgggag tcgctacctc
     1321 gtccgctccg acgacgtggt agaaactgtc tacaacgacc ggggggagat cgtgaaaacc
     1381 aaggagcgcc ggctcttcat gctgaatgac gtgctcatgt gcgccacggt cagcgcccgc
     1441 acctcccatg acagcagtgc cctgacatcg accggccaga ggtatttgtt gaagtggagc
     1501 gtccctctcg ggcacgtgga agtgatagaa tacggcggca gcgagggcgc gggggagaat
     1561 ggcaggggtc ccgtggtgcc cgcgcccgag agcctggcag cggtggccgg caccaagcca
     1621 aacagagttt acgtggggcc ggggcagctg tatcaagatt tacaaaattt ggcgcatgac
     1681 ttaaatgtcg tcggtcaaat cactcaactg gttggaaacc tcaaaggaaa ctatcagaat
     1741 ttgaaccagt cggtagccca cgactggacc tcgggtttac agaggcttat tctgaagaag
     1801 gaagaggaga tcagagcggc cgactgctgt cggatccagt tacagctccc ggggaaacag
     1861 gacaagtccg gccggccgac tttcttcact gctgtgttca ataccttcac cgccgccatc
     1921 aaggagtcct ggatcaacaa cctgcagatg gccaagctcg ccctcgagga agagaaccac
     1981 ctgggctggt tctacgtgga ggacgacggg aatcagatca agaaggagag gcaccccctc
     2041 ctcgtgggac acatgcctgt gacggtggcc aagcagcagg agttcaagat cgaatgtgcc
     2101 gtttataatc ctgagcctta cctaaataat gagaatcagc cagactcgtt ttccacggct
     2161 catggtttcc tgtggatcgg aagctgcacc agtcagatgg gtcagatagc catcgtctcc
     2221 tttcaaaact ccagccccaa ggtcatcgag tgcttcaacg tggagtcccg cgtcctgtgc
     2281 atggtgtacg tgcccgcaga ggacaggccc cgggagcccg agagcacggg gggccgagtg
     2341 ctgggcatcc ccaccgtctg cctggggacg gaggagggga gcatttccat ttataaaagc
     2401 agccaaggct ccaagaaggt gcggctccag cacttcttca ctcccgagaa atccacggtc
     2461 atgagcttgg cctgcacgcc gcagagcctg tacgccggcc tggtcaacgg ggccgtggcc
     2521 atctacgcca gagcggacga tggatcctgg aattccgaac ctcaaacagt gatacaatta
     2581 ggcgtcctcc cagttcgaag tctgctaatg atggaagaca cactgtgggc ggcgtctgga
     2641 ggtcaagtgt ctgtaatcag tgtggagact cacgccgtgg agagccagct ggaggcccac
     2701 caggaggagg gcatggtggt ctcacacatg gccattgccg gtgtgggcat ctggatcgcc
     2761 ttcacctcag ggtccacgct ccgcctcttc cacacggaga cgctcaaaca tctccaggac
     2821 gtcaacgtcg ccaccccggt ccaccacatg ctgccaggac accagcggct gtctgtgacc
     2881 agcctgctcg tctgccacgg cttgctgatg gtcggcacca gcctgggcgt cgtggtggcc
     2941 ctgcccgtcc ctcgtctgca ggggatcccc aaggtgactg gtcgaggcct ggtctcctac
     3001 catgctcaca acgggcccgt caagttcctg gtcgtggcca cagccgcctc caaggcggac
     3061 agagacaagc ccagggacag cccgcccccc ggtgccgacc cccaggatga agaccagagg
     3121 gacccgctcc ccggtgaggg gcccgggccc tgcctgagcc gcagcagtcc tgacgccgtc
     3181 tggctggggg cttcgctggg ctccctcgcc caggccagcg acgtctcctc cacgtctggg
     3241 tccccgacgc cttcccaggg ctcgggctcc ctggggcccc gctcagagga gagtttcatc
     3301 caggaccccc tgcggctccc ctgcagctcc cccggccgag ggcggcgggc caggaaggcc
     3361 aaggccagct ccgtgctggt ggcctgtggg ggacagggcc accggcgggt gagcaggaag
     3421 gccaggcagc agcggccgga ggagttggcc tcgtccgtca tggtctggca gatccccctg
     3481 ctgaatgtgt gagccagggt cgagattcgg gggtggcctt tcagccaagt cacacacccc
     3541 gagcggtccc gccgcatcta tactgactgg gtgtgaatcg ccagccgtct cggggccgaa
     3601 aagtgcaata tcgtcacggg ggcatctccg gcagcccctc cctccacccc aggcagggga
     3661 gccccgtgtg aacgcgcatg aggaaggggg tggacgccgt gttcgagtgg gtgggggtcc
     3721 cgggaggatg ctccccctct gacccccgtg gtccttaata aacacgggac gctgcagacc
     3781 tgttctcgta gcctgtcacc tagagaactc acagactcag aactcacggg gaaatacagc
     3841 gtattcactg gtggaggggt ttattaacaa ttcttaaagt aattgtcctt gattcagatt
     3901 cactactttt atttatgttg tatatctttt aactccagaa tagaatttgt aacaatgaag
     3961 aaagccacgt aacacatacc aggccgggtg gtgttatgtg ctatctgagt tgaactgagt
     4021 tttccaaagt ggtataacac gtgtactgta tatttttaac aaagtagtat ttttatatcg
     4081 catttttcta ttaaaaaaaa ttaacaaagt tttagtcact atgttatccg taacgtttca
     4141 caaataacgt ttgctttgaa ccaaaatcct caacgcctgt caacatttag actcaagcgt
     4201 caatgccaaa atacccacgt tggagatgtg tgtgttttag tgtctcagga gacgtagaag
     4261 gtgtcttggt ccatcctttc ctgctgtgtt tgcatctgtc gaccaggagc gcttctagct
     4321 ttgaatgcat gtcctgaagg atgcacggtg ctggtcaggg cgggcgccgg tgctggcggc
     4381 ggacacagga cacaggaaag gtggcccttg gtcggcagac tggcacttag ggccccttct
     4441 gcgggcgtca tgcacgagtg gtccgtgagt tcgctgtgct ccacgtgtcg ttatctatca
     4501 atgttctact tactggatgg ttaagaaaaa caatgcaagt ccacccgaga ttaatgtctc
     4561 agcactttac aggtgactaa aaatgctaat tttatgactt tgccaaatat tttccaaggt
     4621 gcacgtgtgc ccccatgtga aagaaatatc tcccccagcc ttccttaaac tattagctgc
     4681 tatcttattt catgaataaa gtctttttat tt
//
LOCUS       XM_032618154            6130 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adhesion G protein-coupled receptor A2
            (ADGRA2), mRNA.
ACCESSION   XM_032618154
VERSION     XM_032618154.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6130
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6130
                     /gene="ADGRA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746643"
     CDS             409..4425
                     /gene="ADGRA2"
                     /codon_start=1
                     /product="adhesion G protein-coupled receptor A2"
                     /protein_id="XP_032474045.1"
                     /db_xref="GeneID:116746643"
                     /translation="MGAAGRRMRWAPARLLLPLLQWLLLLAPEIRGAPGCPVPIRSCK
                     CSGERPKGLSGGAPSPARRRVVCGGGDLPEPPEPGLLPNSTVTLLLSNNKITGLRNGS
                     FLGLPLLEKLDLRNNVISTVQAGAFLGLGELKRLDLSNNRIGCLTSETFQGLPRLLRL
                     NISGNIFSSVPPGVFDELPALKVVDLGTEFLTCDCRLRWLLSWARNRSVQLSERTLCA
                     YPSTLHAQTLGGLQEAQLRCEGALELHTHHLIPSLRQVVFQGDRLPFQCSASYLGNDT
                     HVRWYHNRAPVEGDEQAGILLGDSLIHDCTFITSELTLSHIGVWASGEWECSVSTVQG
                     NASKKVEIVVLETSASYCPAERVANNRGDFRWPRTLAGITAYQSCLQYPFTSVPLSGG
                     APGTRASRRCDRAGRWEPGDYSHCLYTNDITRVLYTFVLMPINASNALTLAHQLRVYT
                     AEAASFSDMMDVVYVAQMIQKFLGYVDQIKELVEVMVDMASNLMLVDEHLLWLAQRED
                     KACSGIVGALERIGGAALSAHAQHISVNSRNVALEAYLIKPHSYVGLTCTAFQRREAG
                     APGTRPLGPGQNPSLEPEPLADQQLRFRCTTGRPNVSLSSFHIKNSVALASIQLPPSL
                     FSSLPAALAPPAPPDCTLQLLVFRNGRLFRSHGNTSRPGAAGLGKRRGVATPVISAGT
                     SGCSVGNLTEPVAVSLRHWAEGAEPVAAWWSQEGPGGPGGWSSEGCQLRSSQPHVSSL
                     QCQHLGNVAVLMELRAFPREVEGSGAGLHPVVYPCTALLLLCLFSTIITYILHHSSVR
                     VSRKGWHMLLNLCFHMAMTSAVFAGGITLTNYQMVCQAVGITLHYSSLSTLLWMGVKA
                     RVLHKELTWRAPPPQEGDAALPAPRPMLRFYLIAGGIPLIICGITAAVNIHNYRDHSP
                     YCWLVWRPSLGAFYIPVALILLITWIYFLCAALRLRGPLAQSPKGGTSRVSLEPGEEL
                     RSSTRLRSSGPLLSDSGSLLAAGSAGVVTPGPPEEGDGLYSPGAQLGALVTTHFLYLA
                     MWACGALSVSQRWLPRVVCSCLYGVAASALGLFVFTHHCARRRDVRASWRACRPPASA
                     SRASPRAAPAAPEDGSPAFAEGPASLKSSPSGSSGPAPPPGPCKLTNLQLAQSQACEA
                     GVAARGEAEPETPGPRGSLGPRHPNNSHHGRRGHKSRAKGHRAGEAGGRNRLRAPRGG
                     AAGAAELPSGESGSPHNSPSDSYPGSSRNSPGAGPRLEGESTLTPSEGSDTSAAPLPE
                     AGRPGQRRSAGRDHLKGGGGGALEKESQRRSYPLNAASLNGAPKGGKYDDVTLSGAEA
                     AGGGGCMKTGLWKSETTV"
     misc_feature    661..732
                     /gene="ADGRA2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    667..837
                     /gene="ADGRA2"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    733..804
                     /gene="ADGRA2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    802..966
                     /gene="ADGRA2"
                     /note="Leucine rich repeat; Region: LRR_8; pfam13855"
                     /db_xref="CDD:404697"
     misc_feature    805..876
                     /gene="ADGRA2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    877..948
                     /gene="ADGRA2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    889..>1122
                     /gene="ADGRA2"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    949..987
                     /gene="ADGRA2"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1174..1434
                     /gene="ADGRA2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1336..1350
                     /gene="ADGRA2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1378..1395
                     /gene="ADGRA2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1417..1428
                     /gene="ADGRA2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1456..1656
                     /gene="ADGRA2"
                     /note="Hormone receptor domain; Region: HRM; cl02422"
                     /db_xref="CDD:413313"
     misc_feature    2527..2661
                     /gene="ADGRA2"
                     /note="GPCR proteolysis site, GPS, motif; Region: GPS;
                     pfam01825"
                     /db_xref="CDD:460350"
     misc_feature    2701..3654
                     /gene="ADGRA2"
                     /note="G protein-coupled receptor 124, member of the class
                     B2 family of seven-transmembrane G protein-coupled
                     receptors; Region: 7tmB2_GPR124; cd15998"
                     /db_xref="CDD:320664"
     misc_feature    2707..2784
                     /gene="ADGRA2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320664"
     misc_feature    order(2722..2724,2734..2736,2869..2871,2878..2883,
                     2890..2892,2911..2913,2932..2934,3175..3180,3184..3186,
                     3190..3192,3502..3504,3511..3513,3556..3558,3568..3570)
                     /gene="ADGRA2"
                     /note="putative polypeptide ligand binding pocket
                     [polypeptide binding]; other site"
                     /db_xref="CDD:320664"
     misc_feature    2818..2886
                     /gene="ADGRA2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320664"
     misc_feature    2911..2994
                     /gene="ADGRA2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320664"
     misc_feature    3055..3117
                     /gene="ADGRA2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320664"
     misc_feature    3166..3255
                     /gene="ADGRA2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320664"
     misc_feature    3445..3528
                     /gene="ADGRA2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320664"
     misc_feature    3547..3624
                     /gene="ADGRA2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320664"
     misc_feature    3871..>4287
                     /gene="ADGRA2"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
ORIGIN      
        1 gggagcggcg ccgagccgag ttgcctccat ccatggcacg gagcggcggc ggcggcagga
       61 gcccggctcg atccgctagg tcacagcccc gcgcagagcg agcagacgac gaggagcggc
      121 ccggccttaa ccggcccggg agcaccacgc agacagtcgg gccgcgccgc cggggcccgc
      181 ccgcgctgcg ctgacagccg cgcccgcgtc ctccccgccg gggcgctcgc cggacatgcc
      241 cccggggcgc ggcggcgggg accgcggggc ttgcctccgc ccagggcccc ccgctccgcc
      301 ctcgagcgcc ccgtgccccc gctgagcacg cctctcgcac gcccggatcc ctccggccgg
      361 cgcgcagacg ggccccagcg ctgtcggtcc ccgcggggcg atgggctgat gggcgccgcg
      421 ggacgcagga tgcggtgggc gcccgcgcgc ctgctgctgc cgctgctgca gtggctgctg
      481 cttttggcgc ccgagatccg cggcgcgccc ggctgcccgg tccctatccg cagctgcaag
      541 tgctcagggg agcggcccaa ggggctaagc ggcggcgccc ccagcccggc gcgcaggagg
      601 gtggtgtgcg gcggcgggga cctcccggag cctcccgagc ccggccttct gcctaacagc
      661 accgttaccc tgctcttgag taacaacaag atcacggggc tccggaacgg ctccttcctg
      721 ggactgccgc tgctggagaa actggacctg aggaacaacg tcatcagcac agtgcaggcg
      781 ggcgccttcc tgggtctggg ggagctgaag cgcctagatc tctccaacaa ccggattggc
      841 tgtctcacct ctgagacctt ccaaggcctc cccaggcttc tccggctaaa catatctgga
      901 aacatcttct ccagtgtgcc accgggggtc tttgatgagc tgccagccct taaggttgtg
      961 gacttgggca ccgagttcct gacgtgtgac tgccgcctgc gctggctgct gtcctgggcc
     1021 cggaatcgct ccgtgcagct gtcggagcgc acgctctgtg cctaccccag cactctgcac
     1081 gcccagaccc tgggcggcct ccaggaggcc cagctgcgct gcgagggggc cctggagctg
     1141 cacacacatc acctcatccc atccctccgc caagtggtct tccagggcga ccggctgccc
     1201 ttccagtgct cggccagcta cctgggcaat gacacccacg tccgctggta ccacaaccgg
     1261 gcccctgtgg agggcgacga gcaggcgggc atcctcctgg gcgacagcct catccacgac
     1321 tgcaccttca tcaccagtga gctgaccctg tctcacatcg gcgtgtgggc ctcaggcgaa
     1381 tgggagtgct ccgtgtctac ggtccaggga aacgccagca agaaggtgga gatcgtggtg
     1441 ctggagacct cggcctccta ctgccccgca gagcgagtcg ccaacaaccg cggggacttc
     1501 aggtggcctc gaactctggc tggcatcaca gcctaccagt cctgcctgca gtaccccttc
     1561 acctcggtgc ccctgagcgg gggtgcccct ggcacccgag cctcccgccg gtgtgaccga
     1621 gctggccgct gggagccggg ggactactcc cactgtctgt acaccaacga catcaccagg
     1681 gtgctctaca ccttcgtgct gatgcccatc aatgcctcca acgcactgac cctggcccac
     1741 cagcttcgag tatacacggc cgaggccgcc agcttctccg acatgatgga cgttgtctac
     1801 gtggctcaga tgatccagaa gtttctgggt tacgtcgacc agatcaaaga gctggtggag
     1861 gtgatggtgg atatggccag caacctgatg ctggtggacg agcacctgct gtggctggcc
     1921 cagcgcgagg acaaggcctg cagcggcatc gtgggcgccc tggagcgcat tgggggggcc
     1981 gccctgagcg cccacgccca gcacatctct gtgaactcga ggaacgtggc cttggaggcc
     2041 tacctcatca agccgcacag ctacgtgggc ctgacctgca cggccttcca gaggagggag
     2101 gccggtgcgc cgggcacccg gcccttgggt cccggccaga acccgtccct ggagccggag
     2161 cccctggccg accagcagct ccgcttccgc tgtaccacgg ggaggcccaa cgtttctctg
     2221 tcgtccttcc acatcaagaa cagcgtggcc ctggcctcca tccagctgcc gcccagtcta
     2281 ttctcatccc tcccggctgc cctggccccc ccggcccccc cagactgcac cctgcagctg
     2341 cttgtcttcc gaaacggccg tctcttccgc agccacggca acacctcccg ccctggagcc
     2401 gctgggcttg gcaagaggcg cggcgtggcc acccccgtca tctctgcggg aaccagtggc
     2461 tgcagcgtgg gaaacctgac tgagccggtg gccgtttcgc tgcggcattg ggctgagggg
     2521 gccgagcctg tggccgcttg gtggagccag gaggggccgg gggggcccgg gggctggagc
     2581 tctgagggct gccagctccg ctccagccag ccccacgtca gctccctgca gtgccagcac
     2641 ctgggcaacg tggccgtgct catggagctg cgcgccttcc ccagggaggt ggagggctca
     2701 ggggcaggcc tgcaccctgt cgtgtacccc tgcacggccc tgctgctgct ctgcctcttc
     2761 tccaccatca ttacctacat cctccaccac agctccgtcc gcgtgtcccg gaagggctgg
     2821 cacatgctgc tgaacctgtg cttccacatg gccatgacct ccgccgtctt cgcgggaggc
     2881 atcacactca ccaactacca gatggtctgc caggcggtgg gcatcaccct gcactactct
     2941 tcactgtcca cactgctctg gatgggggtg aaggcccgtg tcctccacaa ggagcttacc
     3001 tggagggcac cacctccaca agaaggggat gctgccctgc ctgccccccg acccatgctc
     3061 cggttctatt tgatcgcggg agggatccca ctcattatct gtggcatcac agccgctgtc
     3121 aacatccaca actaccggga ccacagcccc tactgctggc tagtgtggcg cccaagccta
     3181 ggagccttct acatccccgt ggctttgatt ctgctcatca cctggatcta tttcctgtgc
     3241 gcggcgctgc gcttacgggg tcctctggca cagagcccaa aggggggcac cagcagggtc
     3301 tccctggagc caggggagga gctgaggagt tccaccaggc tcaggagcag cggccccctc
     3361 ctgagtgact cgggttccct tctggccgct gggagcgcag gggtggtgac gcctgggccc
     3421 ccggaggagg gtgacggtct ctattctcca ggagcccagc tgggggcgct ggtgaccacg
     3481 catttcctct acctggccat gtgggcctgc ggggctctga gtgtgtccca gcgctggctg
     3541 ccccgggtgg tgtgcagctg tctgtacgga gtggcggcct ccgccctggg cctcttcgtc
     3601 ttcacccatc actgtgccag gcgcagggac gtcagggcct cctggcgcgc gtgccgtccc
     3661 cccgcctcgg cctcccgagc ctccccgcgg gccgcgcccg ccgccccaga ggacgggtcc
     3721 ccggcgttcg cagaggggcc cgcgtccctc aagtcgtccc cgagcggcag cagcggcccc
     3781 gccccgcccc cgggcccctg caagctcacc aacctgcagc tggcgcagag ccaggcgtgc
     3841 gaggcggggg tggcggcccg cggggaggcg gagcccgaga cgccgggccc ccgggggagc
     3901 ctcggcccgc gccacccgaa caactcgcac cacggccgcc ggggccacaa gagccgggcc
     3961 aaggggcatc gcgcgggcga ggccggcggc aggaaccggc tcagggcgcc gcgcgggggc
     4021 gcggccgggg cggccgagtt gccgtcgggc gagagtggca gcccgcacaa cagcccgtcc
     4081 gacagctacc cgggcagcag ccgcaacagc ccgggcgccg gcccccggct cgagggcgag
     4141 agcacgctca cgccgtcgga gggcagcgac acgagcgccg cgccgctccc cgaggccggc
     4201 cggccgggcc agcgccgcag cgccggccgc gaccacctca agggcggcgg gggcggcgcg
     4261 ctggagaagg agagccagcg ccgctcgtac ccgctcaacg ctgccagcct gaacggcgcc
     4321 cccaagggtg gcaagtacga cgacgtcacc ttgagcggcg ccgaggcggc cggcggcggc
     4381 ggctgcatga agacggggct ctggaagagc gagaccaccg tctaggctgg gggcgggcgc
     4441 cgcttcagga cgggagggcc gcgcgcgcag gagaccccgc ttctcggggg ccctcagaga
     4501 cgtcgatcgg tacgtcccca ggattgaggt agaggtgcct cgctgcgccc gggctcgcca
     4561 gctttagtcc cggaggctgg ggaaaggaca ggcacaggcc cgccaacgcg aagagggcca
     4621 tccctctggg gtagcgacag acaatccccg aaccgcagac gggatacgtt tccgtcccag
     4681 cgcaggctgg tttcggcagc ccctgccgtc caggctcggg ggaaaggtcc tgtggggctg
     4741 cggagtgagc aagggcggca gggacagcac agctcaggcg ggcttctcct aaggtactcc
     4801 ccgcaccccc cgccccgctc acgggcggcc atcagcctta cccggaacac acgggcgatg
     4861 ggggcctgag taaggtgttc tcgcctcact gccctcctct gaatcagtca cccacccgtg
     4921 cccagatcct agggcctctc ccccacccag ttctggctaa ctaggaagcc agcctagcag
     4981 atgagccagg tgaccaggac cagtgggagg aaacaaggtg ctgcttttcg gatcaactat
     5041 gcaaaaggag aaggtggggc agggtgaaag gcagctgcag ggatcaacca gccctctggg
     5101 aggggggcag gtggaaaggt gcaccatcag ggctggaggc cattaccaca ggactgggac
     5161 acacaccaca cggcagggct cagaggtggc acttcaggac aaagcccagg ccctacacct
     5221 aagaagctgc ctgacagatg cctggagatg atgtgaggga agcagagtta gtgctaagat
     5281 ctggagctga agttagtcct gccttaaacc taatcctata aaaaaacaaa aacaacaaaa
     5341 cgctctgaag aggggcgcca ccgccaggct gcaggtggtg ctggagaagc acttactgtc
     5401 caatcacagg cccatatccc cagtctcggc cctccacacc gagggactga caaagcgcac
     5461 tccccctgcc acgtgaggcc atagaggaga accgttccaa tgatctgatc tccagctcca
     5521 tattagggag aaacctccaa aacatcaaac caggttcctg cctcccgtaa gcccaagcca
     5581 agtccccagg gtagtggggc ctggggaggc ctgcagctca cctggggtcc gcaccttcac
     5641 tgcttttaaa caccagcacg catacttctc ccaacctaaa aagcaaccac cagcctttgg
     5701 ttacaggatg cagtgcgagt ggagggaacc ctgggcctca tgaaaagcca cagggaaacc
     5761 cggccccgtc tccgtatcac cccagcctga tcaccaaggc aagagaagac agaggggaag
     5821 ggagaaaacc cacacgtctt gggatgcatc ctgttattta tgcttttgct gcacagacaa
     5881 tattagacag aaaaaaaaaa aaggccaaaa aaaaaaaagc ttcgtattat tcttccactt
     5941 atgctggctg ctgtttacat accccgccaa tgccttagca ctggagagct ttttgcaata
     6001 cgctggggaa aggggaggga ggggatgaaa agtgccaaag aaaacatgtt tttaaaagct
     6061 cgggttttat acaatagaat gttttctagc agatgcctct tgttttaata tattaaaatt
     6121 ttgcaaagcc
//
LOCUS       XM_032618156            4514 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAB11 family interacting protein 1
            (RAB11FIP1), transcript variant X1, mRNA.
ACCESSION   XM_032618156
VERSION     XM_032618156.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4514
                     /gene="RAB11FIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 12 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746644"
     CDS             62..3775
                     /gene="RAB11FIP1"
                     /codon_start=1
                     /product="rab11 family-interacting protein 1 isoform X1"
                     /protein_id="XP_032474047.1"
                     /db_xref="GeneID:116746644"
                     /translation="MSLAASAGRGPGAVWSPTHVQVTVLQARGLRAKGPGGTSDAYAV
                     IQVGKEKYATSVSERSLGAPVWREEATFELPPLLSAEAAPAAAATLQLTVLHRALLGL
                     DKFLGRAEVDLRELHRDHGHRKTQWCTLKSKPGKKNKERGEIEVDIQFMRSNMTASMF
                     DLSMKDKSRNPFGKLKDKIKGKNKDSASDTVSAIIPSVTPSADSDDESPSKDKKKKSK
                     LKTLFSRSNLQRAPLSQSMSVLPTAKSDKVLLRPGDFQSQWEDEDNGEDKSSSASDVL
                     SHKGTASVDPKQLNQIHFNPPKKEGLSFLGGLRSKNDILSRSNVCINGNHVYVEQSEA
                     KSETKGSSPASSPSPQGLRKKHLFSSTENLASRPLKEPGEGGAVPSESSTKDSLKSMS
                     LPSYRPLVSGDLRENTALATLEAAKETKESKKQENKKSSLLSLVTGKKDTAKGSEGES
                     PPAAPGKEREGTPVAVRASEDQPGPVDDPVKRSDEGTAAIVSGRGRAPNPFEDVQIPE
                     PEADPEPKAAPAPPVPSPRAPQTRAVKPRLEVSPEAQPAPRLPPSARSPLVFSALPSS
                     SGQTPIPSKLGHDSEPQPFESPPGSSFSSPVAAPISTSTPIEHWPPADVGEASPEEPP
                     SLPEPELEKESLTQVPSTVPCAVGSLSKQTPIPVGKGMEDSPVGKTSADDPGQPLRTQ
                     PEARREEEELLGSPPRKQQGVIPSSVEAREVTSATALRGGGMGSPAGKPPRREASGSA
                     GQSRSPVGDADGGGGMSPAVKEAVPPIPVGEAVPLLDSAVQKHEEMGPDACEGGKEIE
                     GQVLFSKQLSREEAGEEAPVLVRGDRGDPQEVTPQGAAPGNAWDMGHSQEGAAVAGPW
                     PAALAARPPRPSSKGSFLRGPAHAASSGRDGPRLRSQGDDTRMAQNQSKASDHEGLLS
                     DPLHGLQSSCEAKPPALAHLDLTLPSIPEVASEDERGDQLEDDRGVAPVAALGGGASA
                     RAEQERAPSREAGGSAGGLCEPRPGAPRAPAPASAEQTTALAVQEPQSPGPGDSGEAK
                     PVGDGRPGQPPATALDSLVSGPPFSEPFPATRSFPTCAHSDTHHTSTAESQKKAAVEG
                     SAGKVENSGKRKPLLQAWVSPSDAQPVSAQPNAGSGSAKHRLHPVKPMNTAAAKVALS
                     SSGTATIISENLVNEAMMKKYKPSEPAFAYAQLTHDELIQLVLKQKETISKKECQVRQ
                     LEDYIDNLLVRVMEETPSILRVPSQVGKKAGKM"
     misc_feature    119..508
                     /gene="RAB11FIP1"
                     /note="C2 domain found in Rab11-family interacting
                     proteins (FIP) class I; Region: C2_Rab11-FIP_classI;
                     cd08682"
                     /db_xref="CDD:176064"
     misc_feature    2267..>3424
                     /gene="RAB11FIP1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    3599..3742
                     /gene="RAB11FIP1"
                     /note="FIP domain; Region: RBD-FIP; pfam09457"
                     /db_xref="CDD:462805"
ORIGIN      
        1 ccgtaggggc cgcgggtcgc ggcgatcttc tcagtttcgg ttggaccgca gcgcagccac
       61 catgtccctg gcggcctcgg cgggcagggg cccgggggcc gtgtggtccc caacgcacgt
      121 gcaggtgacg gtgctccagg ctcggggcct gcgggccaag ggccccgggg gcacgagcga
      181 cgcgtacgca gtgatccagg tgggcaagga gaagtacgcc acctccgtgt cggagcgcag
      241 cctgggcgcg cccgtgtggc gggaggaggc cacctttgag ctaccgccgc tgctgtcggc
      301 tgaggcagcg cccgccgccg ccgccaccct gcagctcacc gtgctgcacc gcgcgctgct
      361 cggcctagac aagttcctgg gccgcgccga ggtggacctg cgggagctgc accgggacca
      421 cggccacagg aagacccagt ggtgtacctt gaaatccaaa ccggggaaga agaataaaga
      481 acgaggagaa attgaggttg acatccagtt tatgagaagc aacatgaccg ctagcatgtt
      541 tgacctttcc atgaaagaca agtctcggaa tcccttcggg aaactgaagg acaagatcaa
      601 ggggaagaat aaggacagcg cgtcagatac cgtgtcagcc atcatcccca gcgtgacgcc
      661 ctcggctgac agcgatgacg agtctccttc gaaagacaag aagaagaagt caaagctcaa
      721 gaccttgttt tccaggtcca acctgcagag agcaccgctt tcccagtcca tgtctgtcct
      781 gccgactgca aagtcagaca aagtgctgct tcgtcctgga gactttcagt cccagtggga
      841 ggatgaggac aatggtgagg acaagtcctc ctctgcctcg gacgtcttgt ctcacaaggg
      901 aacggcaagt gtggatccta agcagctgaa ccagatccac ttcaaccccc ccaagaagga
      961 aggactctcc ttcctgggag gccttcggtc taagaatgac atcctttccc gctcgaatgt
     1021 ttgtatcaac gggaaccacg tctatgtgga gcagtccgaa gccaagagcg agaccaaggg
     1081 cagctccccg gcctcctcgc catcccccca gggcctcagg aagaagcatt tgttctcatc
     1141 tacagaaaac ctggcctctc gacctttgaa ggagcctggg gaaggaggtg cagtgccttc
     1201 cgagtcttcc acaaaggact ctctcaagtc catgtccctg ccatcctacc ggccgctggt
     1261 cagcggggac cttcgagaga acacggctct ggcgaccttg gaggctgcaa aggaaaccaa
     1321 agagagcaag aaacaggaga acaagaagtc ctctctgctc tccctggtga ccgggaagaa
     1381 ggacacggcc aagggcagtg aaggcgaaag cccgccagcc gcccccggga aggagaggga
     1441 aggcacgccc gtggcggtta gagccagtga ggaccagccg gggcctgtcg acgaccctgt
     1501 gaagagatca gacgagggga ctgcggccat tgtctcggga cggggcagag ccccgaaccc
     1561 ctttgaagac gtgcagatcc cagaaccaga agctgaccca gagcccaagg ctgcaccagc
     1621 gccacctgtt ccctcaccca gggctcccca gaccagagcc gtgaaacccc gactggaagt
     1681 gtctccagag gctcagcccg cacccaggct ccctccttcc gctcgctctc ctctcgtgtt
     1741 ctctgctctc ccttccagtt ctggtcagac acccatccct tctaaactgg ggcatgattc
     1801 agagccacag ccctttgaat ctcctcctgg ctcctctttc tcctctcctg tagcggcccc
     1861 catttccaca tccactccca ttgaacactg gcctcccgca gatgtgggtg aggccagtcc
     1921 tgaagaaccg ccttcgctcc ctgaaccaga gctagaaaag gagagtttga cacaagttcc
     1981 aagtactgtt ccttgtgctg tgggctcgct ttccaaacag acacccattc cagtggggaa
     2041 agggatggaa gactctccag tggggaagac cagcgctgat gacccaggac agcctctccg
     2101 gacgcagcct gaagcgaggc gagaagaaga agagcttctg gggtctcccc ccagaaaaca
     2161 acaaggtgtc atcccttcat ctgtcgaggc ccgagaagta acatccgcca ctgcgctcag
     2221 aggaggcggg atgggcagcc ctgccgggaa gcccccaagg cgggaagcct caggctctgc
     2281 gggtcaatct aggtctcccg tgggggatgc agatgggggt ggcgggatga gtcctgcagt
     2341 taaggaagcg gtgcccccca ttcccgtggg cgaggcggtg cctctacttg actctgcggt
     2401 gcagaaacac gaagagatgg gtccggatgc ctgtgagggc ggaaaggaaa tcgaggggca
     2461 ggtgttgttt tccaagcagc tctctaggga agaggcgggg gaggaggccc ctgtgctggt
     2521 ccgcggggac agaggtgacc cccaggaggt gacgccacaa ggggctgccc ctggaaatgc
     2581 gtgggacatg ggacactccc aggagggcgc ggctgtggct ggaccctggc ccgctgccct
     2641 ggcagctcgc cctccccgcc cgtcctccaa ggggagcttc ttgcggggcc ctgcgcatgc
     2701 cgccagctcg gggagagatg gtccccgtct caggagtcag ggagatgaca cccggatggc
     2761 gcagaaccag agcaaagcca gtgaccacga gggtctgctg tctgaccccc tgcacggcct
     2821 tcagtcctcc tgcgaggcaa agcccccagc cctggcccat ctggacttga ccctgccttc
     2881 catccccgaa gtcgcttcgg aagacgagag aggagatcag cttgaagatg acagaggggt
     2941 ggccccggtg gcagctctgg gaggaggggc ttctgcccgt gctgagcagg agagggcgcc
     3001 cagcagggag gccggcgggt cagcaggggg cctgtgcgag cccaggccag gagcgcccag
     3061 agcacccgca cccgcttctg cagagcagac cacagccttg gcggttcagg aaccacagtc
     3121 gccgggcccc ggtgacagcg gggaggcaaa accagtggga gatgggaggc cgggtcagcc
     3181 tccagccaca gccctggatt cccttgtgtc cggccccccc ttttctgagc cctttcctgc
     3241 cacacgctct tttcccacct gtgcacactc tgacacccac cacaccagta cagcagaatc
     3301 tcaaaaaaaa gcagcagtcg agggctccgc gggtaaagtg gaaaattctg gcaagaggaa
     3361 gccgcttctt caggcctggg tctcaccctc agacgcacag ccagtctcgg ctcagccaaa
     3421 cgctggaagc gggtcggcca agcacagact tcatcccgtg aagccgatga acacggcagc
     3481 cgccaaggtc gctctctcca gctcgggaac tgccaccatc atcagtgaga acttggtcaa
     3541 cgaagccatg atgaagaaat acaagccctc ggaacccgcg tttgcttatg cacagctgac
     3601 ccacgacgag ctgatccagc ttgtcctcaa acagaaggaa acgataagca agaaggagtg
     3661 tcaggtgcgc cagctggaag actacatcga caacctgctg gtcagggtca tggaggagac
     3721 ccccagcatc ctccgggttc cctctcaggt tggcaaaaaa gcaggaaaaa tgtgaagcac
     3781 ttgcctccgg cactgagact tgtgtgtgag tttgtttccg cctgctccca aggccgagga
     3841 ctcggtgtgc ctgagagccc cagggtccag gctccagacc gctctctccc tcacgcctta
     3901 tctggcaaga gtcagtccca cccacagaag ccaggttaat tattacaatg aatcttttat
     3961 tggacattcc cagggtttta tttttaaatg ccactgtgcc tttaaccaag ttgtaaatat
     4021 tttatgcctg accggagaca tggtcattag atctgatcct ggcccagagg ttcagatggc
     4081 gctgggggta ttaatgtatt tttaacattg gggttttctt tctttagtat tgagatttta
     4141 aagtacgtct cccgggcttc cctggtggcg caggggtcga gaatcctcct gctaatgcgg
     4201 gagacacggg ttcgagccct ggtctgggaa ggtctcacat gccgcggagc aactaggccc
     4261 gtgagccacg actactgggc ctgcgcgtct ggaggctgtg ctcgacaatt agagaggccg
     4321 cgatagtgag aggcccgcgc accacgatga agagttgccc ccacttgcca caactagaga
     4381 aagcccttgc acgggaacga agacccaaca cagccaaaaa taaataaata aataaaatta
     4441 aaaaaaaaaa aaagccaata ggactaggag ggagaaacca taccttggaa aaaatcttta
     4501 aaaaataaaa atat
//
LOCUS       XM_032618157            2985 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RAB11 family interacting protein 1
            (RAB11FIP1), transcript variant X2, mRNA.
ACCESSION   XM_032618157
VERSION     XM_032618157.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2985
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2985
                     /gene="RAB11FIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 13 Proteins, and
                     90% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746644"
     CDS             113..2050
                     /gene="RAB11FIP1"
                     /codon_start=1
                     /product="rab11 family-interacting protein 1 isoform X2"
                     /protein_id="XP_032474048.1"
                     /db_xref="GeneID:116746644"
                     /translation="MSLAASAGRGPGAVWSPTHVQVTVLQARGLRAKGPGGTSDAYAV
                     IQVGKEKYATSVSERSLGAPVWREEATFELPPLLSAEAAPAAAATLQLTVLHRALLGL
                     DKFLGRAEVDLRELHRDHGHRKTQWCTLKSKPGKKNKERGEIEVDIQFMRSNMTASMF
                     DLSMKDKSRNPFGKLKDKIKGKNKDSASDTVSAIIPSVTPSADSDDESPSKDKKKKSK
                     LKTLFSRSNLQRAPLSQSMSVLPTAKSDKVLLRPGDFQSQWEDEDNGEDKSSSASDVL
                     SHKGTASVDPKQLNQIHFNPPKKEGLSFLGGLRSKNDILSRSNVCINGNHVYVEQSEA
                     KSETKGSSPASSPSPQGLRKKHLFSSTENLASRPLKEPGEGGAVPSESSTKDSLKSMS
                     LPSYRPLVSGDLRENTALATLEAAKETKESKKQENKKSSLLSLVTGKKDTAKGSEGES
                     PPAAPGKEREGTPVAVRASEDQPGPVDDPVKRSDEGTAAIVSGRGRAPNPFEDVQIPE
                     PEADPEPKAAPAPPVPSPRAPQTRAVKPRLHPVKPMNTAAAKVALSSSGTATIISENL
                     VNEAMMKKYKPSEPAFAYAQLTHDELIQLVLKQKETISKKECQVRQLEDYIDNLLVRV
                     MEETPSILRVPSQVGKKAGKM"
     misc_feature    170..559
                     /gene="RAB11FIP1"
                     /note="C2 domain found in Rab11-family interacting
                     proteins (FIP) class I; Region: C2_Rab11-FIP_classI;
                     cd08682"
                     /db_xref="CDD:176064"
     misc_feature    1874..2017
                     /gene="RAB11FIP1"
                     /note="FIP domain; Region: RBD-FIP; pfam09457"
                     /db_xref="CDD:462805"
ORIGIN      
        1 acggaggggg cgtggccgga agccttaaag aggccggcgc ggcggggcgg gccgtagggg
       61 ccgcgggtcg cggcgatctt ctcagtttcg gttggaccgc agcgcagcca ccatgtccct
      121 ggcggcctcg gcgggcaggg gcccgggggc cgtgtggtcc ccaacgcacg tgcaggtgac
      181 ggtgctccag gctcggggcc tgcgggccaa gggccccggg ggcacgagcg acgcgtacgc
      241 agtgatccag gtgggcaagg agaagtacgc cacctccgtg tcggagcgca gcctgggcgc
      301 gcccgtgtgg cgggaggagg ccacctttga gctaccgccg ctgctgtcgg ctgaggcagc
      361 gcccgccgcc gccgccaccc tgcagctcac cgtgctgcac cgcgcgctgc tcggcctaga
      421 caagttcctg ggccgcgccg aggtggacct gcgggagctg caccgggacc acggccacag
      481 gaagacccag tggtgtacct tgaaatccaa accggggaag aagaataaag aacgaggaga
      541 aattgaggtt gacatccagt ttatgagaag caacatgacc gctagcatgt ttgacctttc
      601 catgaaagac aagtctcgga atcccttcgg gaaactgaag gacaagatca aggggaagaa
      661 taaggacagc gcgtcagata ccgtgtcagc catcatcccc agcgtgacgc cctcggctga
      721 cagcgatgac gagtctcctt cgaaagacaa gaagaagaag tcaaagctca agaccttgtt
      781 ttccaggtcc aacctgcaga gagcaccgct ttcccagtcc atgtctgtcc tgccgactgc
      841 aaagtcagac aaagtgctgc ttcgtcctgg agactttcag tcccagtggg aggatgagga
      901 caatggtgag gacaagtcct cctctgcctc ggacgtcttg tctcacaagg gaacggcaag
      961 tgtggatcct aagcagctga accagatcca cttcaacccc cccaagaagg aaggactctc
     1021 cttcctggga ggccttcggt ctaagaatga catcctttcc cgctcgaatg tttgtatcaa
     1081 cgggaaccac gtctatgtgg agcagtccga agccaagagc gagaccaagg gcagctcccc
     1141 ggcctcctcg ccatcccccc agggcctcag gaagaagcat ttgttctcat ctacagaaaa
     1201 cctggcctct cgacctttga aggagcctgg ggaaggaggt gcagtgcctt ccgagtcttc
     1261 cacaaaggac tctctcaagt ccatgtccct gccatcctac cggccgctgg tcagcgggga
     1321 ccttcgagag aacacggctc tggcgacctt ggaggctgca aaggaaacca aagagagcaa
     1381 gaaacaggag aacaagaagt cctctctgct ctccctggtg accgggaaga aggacacggc
     1441 caagggcagt gaaggcgaaa gcccgccagc cgcccccggg aaggagaggg aaggcacgcc
     1501 cgtggcggtt agagccagtg aggaccagcc ggggcctgtc gacgaccctg tgaagagatc
     1561 agacgagggg actgcggcca ttgtctcggg acggggcaga gccccgaacc cctttgaaga
     1621 cgtgcagatc ccagaaccag aagctgaccc agagcccaag gctgcaccag cgccacctgt
     1681 tccctcaccc agggctcccc agaccagagc cgtgaaaccc cgacttcatc ccgtgaagcc
     1741 gatgaacacg gcagccgcca aggtcgctct ctccagctcg ggaactgcca ccatcatcag
     1801 tgagaacttg gtcaacgaag ccatgatgaa gaaatacaag ccctcggaac ccgcgtttgc
     1861 ttatgcacag ctgacccacg acgagctgat ccagcttgtc ctcaaacaga aggaaacgat
     1921 aagcaagaag gagtgtcagg tgcgccagct ggaagactac atcgacaacc tgctggtcag
     1981 ggtcatggag gagaccccca gcatcctccg ggttccctct caggttggca aaaaagcagg
     2041 aaaaatgtga agcacttgcc tccggcactg agacttgtgt gtgagtttgt ttccgcctgc
     2101 tcccaaggcc gaggactcgg tgtgcctgag agccccaggg tccaggctcc agaccgctct
     2161 ctccctcacg ccttatctgg caagagtcag tcccacccac agaagccagg ttaattatta
     2221 caatgaatct tttattggac attcccaggg ttttattttt aaatgccact gtgcctttaa
     2281 ccaagttgta aatattttat gcctgaccgg agacatggtc attagatctg atcctggccc
     2341 agaggttcag atggcgctgg gggtattaat gtatttttaa cattggggtt ttctttcttt
     2401 agtattgaga ttttaaagta cgtctcccgg gcttccctgg tggcgcaggg gtcgagaatc
     2461 ctcctgctaa tgcgggagac acgggttcga gccctggtct gggaaggtct cacatgccgc
     2521 ggagcaacta ggcccgtgag ccacgactac tgggcctgcg cgtctggagg ctgtgctcga
     2581 caattagaga ggccgcgata gtgagaggcc cgcgcaccac gatgaagagt tgcccccact
     2641 tgccacaact agagaaagcc cttgcacggg aacgaagacc caacacagcc aaaaataaat
     2701 aaataaataa aattaaaaaa aaaaaaaagc caataggact aggagggaga aaccatacct
     2761 tggaaaaaat ctttaaaaaa taaaaatata tgggcttccc tggtggcgca gtggttgaga
     2821 gtccgcctgc cgatgcaggg gacgcgggtt cgtgccccgg tctgggaaga tcccacgtgc
     2881 cgcggagcgg ctgggcccgc gagccatggc cgctgggcct gcgcgtccgg agcctgtcct
     2941 ccgcaacggg aggggccacg acagtgagag gcccgcgtaa cgcat
//
LOCUS       XM_032618158            2168 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BRF2 RNA polymerase III transcription
            initiation factor subunit (BRF2), mRNA.
ACCESSION   XM_032618158
VERSION     XM_032618158.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2168
                     /gene="BRF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 8 long SRA reads, 11
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746645"
     CDS             97..1371
                     /gene="BRF2"
                     /codon_start=1
                     /product="transcription factor IIIB 50 kDa subunit"
                     /protein_id="XP_032474049.1"
                     /db_xref="GeneID:116746645"
                     /translation="MPGGGRCPDCGSTELVEDSHYSQNQLVCSDCGCVVTEGVLTTTF
                     TDEGNLREVTYSRSTGKNEQVSRSQQRGLCRVRDLCRVLQLPPTFEDTAVAYYQQAYQ
                     HSGIRAARLQKKEVLVGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYLQMVKVL
                     GLDVPSLCLVDLVKTYCSSFKLFEASPSVPAKYVEDKEKMLSRTLQLVELADETWLVT
                     GRHPLPVITAATFLAWQSLRPSDRLTCSLARFCKLASVDLPYPASSRLQELLAVLLRL
                     AGQLAWLQVLKLDKRSVVAHVGDLLQHRHMLVRKALRDGTAEPDALDAREKGLQGPGQ
                     GQGWGKEDRGDGSVDLPAGKRPASPTLLLPPCMLKPPKRICPTPPVCTVTGDEDISDS
                     EIEQYLRSPQEVRDFQRAQAARQAATSVPNPP"
     misc_feature    112..795
                     /gene="BRF2"
                     /note="transcription initiation factor IIB; Reviewed;
                     Region: tfb; PRK00423"
                     /db_xref="CDD:234758"
     misc_feature    292..582
                     /gene="BRF2"
                     /note="cyclin box found in B-related factor 2 (BRF-2) and
                     similar proteins; Region: CYCLIN_BRF2; cd20555"
                     /db_xref="CDD:410258"
     misc_feature    order(292..294,298..300,409..411,415..429,433..438,
                     475..477,496..501,535..537,544..546,553..558,568..570)
                     /gene="BRF2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410258"
ORIGIN      
        1 aaggctccgc tcctacttcc tgtttccgca cagttgctgc tgtcgacgtg aggggcgggt
       61 gttggaaagc ttcctcggct ttggacgggt tgtgagatgc cgggcggagg ccggtgtccc
      121 gattgcggct ccactgagct cgtggaagac tcgcactatt cgcagaacca gctggtgtgc
      181 tccgactgcg gctgtgtggt caccgaggga gtccttacta ccaccttcac tgacgagggc
      241 aacctccgag aagtaacata ttcccgaagc acagggaaaa acgaacaagt tagtcgcagc
      301 cagcaacgag gtctctgccg agtgagagac ctctgtcgag ttctgcagct gccaccaaca
      361 tttgaggaca cggcagttgc ctactaccaa caggcatacc agcactctgg catccgtgct
      421 gccaggctgc agaagaagga ggtgttggtc gggtgctgtg tcttaatcac ctgccggcag
      481 cgcaactggc ccctgaccat gggaaccatc tgcaccctgc tgtatgcaga tttggatgtg
      541 ttttctggca cctacctgca gatggtgaag gtcctggggc tggatgtgcc atctctgtgc
      601 ttggtggacc tggtgaagac ctactgtagc agcttcaaac tgtttgaagc ctccccgtct
      661 gtgccagcca agtacgtgga agacaaggag aagatgctat cgcgaacact gcagttggtg
      721 gagctggcag atgagacgtg gctggtgacc gggcggcatc ccttgcctgt catcaccgct
      781 gccactttcc tggcttggca gtcgctgcgg ccttcagatc ggctgacgtg ttcccttgcc
      841 cgattttgta aattggcgag cgtggacctg ccctaccccg cttcctcccg cctgcaggag
      901 ctgctggctg tgctgctgcg gctggccggg cagctggcct ggttgcaggt cctgaagctt
      961 gacaagcggt ctgtggtcgc gcacgtcggc gaccttctcc agcaccgcca catgttggtc
     1021 cgcaaggccc ttcgagacgg aacagcagag ccagacgcac tggacgcccg ggagaagggg
     1081 ctgcaggggc cgggccaggg gcaaggatgg ggaaaagagg accggggcga tggctccgta
     1141 gatttgcccg cagggaagcg gccagcgagc cccaccctcc tcctcccacc ctgcatgttg
     1201 aagcccccaa agcggatctg tcccacaccc cctgtctgca cggtcactgg agatgaggac
     1261 atttctgata gtgagatcga gcagtatttg cgttcccctc aggaagttag ggacttccag
     1321 agagcccagg ccgctagaca ggctgccacg agtgtcccta accctccctg atgcacagcc
     1381 ggggtctgcg gggtgggggg gcgcgggcgc ttaaccccac ctgacggcgg cttgctaaca
     1441 ggcccgatgt agccagagaa atcagtgtat acaagtcttt aggtatctcc cttctcattt
     1501 aaggaaccca agaggggctc tgcagttatt ggaccccagg tcccagagtc gaagtcagaa
     1561 ggaacacggg gacgcctggg ttggaaagtt ccatccctcg gtcccagaca gtggtcgcac
     1621 atactcctgt tctgtgggct ggctttctct tggactgttg ggaaagtgcc aggtgctctc
     1681 ctgctctcgc ttcagattgg atacaccgca gctgcagggc tggcggggcc tccctgttgg
     1741 tgtggagcag tgcgcattcc ggatggtatc agccctcaga ggatggaact gggcagccct
     1801 tggccctgcg tccattcaca ggccttagtg ggttcgtgtg tacagtgtca gagatcctct
     1861 ccctcctaac aaaaggaccg gggctagagt aagctcatag ctcaaagggc tttgcaaaat
     1921 tttaatatat taaaacaaga ggcatctgct agaaaacatt ctattgtata aaacccgagc
     1981 ttttaaaaac atgttttctt tggcactttt catcccctcc ctcccctttc cccagcgtat
     2041 tgcaaaaagc tctccagtgc taaggcattg gcggggtatg taaacagcag ccagcataag
     2101 tggaagaata atacgaagct tttttttttt tggccttttt tttttttctg tctaatattg
     2161 tctgtgca
//
LOCUS       XM_032618159            4236 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 21 C8orf48 homolog
            (C21H8orf48), mRNA.
ACCESSION   XM_032618159
VERSION     XM_032618159.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4236
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4236
                     /gene="C21H8orf48"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746646"
     CDS             191..1027
                     /gene="C21H8orf48"
                     /codon_start=1
                     /product="uncharacterized protein C8orf48 homolog"
                     /protein_id="XP_032474050.1"
                     /db_xref="GeneID:116746646"
                     /translation="MADFSKETFESFTDEAQSSSSFSSSGGRQPWSYASGSKYESGTP
                     TPRLQYGDNQSEFSHFKNNEKKLSRKWINNLKGKEMNSGQYQPDTKLETEITQASLEE
                     LNALQSFCTVKINLIHRSATSKGKKSSRHKKLQLGSDAEAPEVDALNCTVPDELLNRI
                     YFKNMRTTPNEVVTAKQHISSRCPNCNRKRAELAQSAFLKQKKTLLESLLLQEKIDEH
                     LHMKDFLTLIGEIHQSLPRLSDDPRIIWERLKEKSQIGYSGFERSRAFGLTVSTTVIA
                     RP"
     misc_feature    638..946
                     /gene="C21H8orf48"
                     /note="Domain of unknown function (DUF4606); Region:
                     DUF4606; pfam15379"
                     /db_xref="CDD:464687"
ORIGIN      
        1 agcgtttact tacggaaccg tcagctccaa aacccatccc caggggttca ggactgacta
       61 gttcctgagg caatcttgac caccgcaaag cagatgagga gcagagcctg atgcaatgtg
      121 atggccatcc gcctagaagc ccgaggattc agagaagcag gggaaattga cccagacaga
      181 catcgggact atggcagact tttctaagga gacctttgag tcctttactg atgaggcaca
      241 gagttccagt tcattcagtt cctctggagg acggcagccc tggtcctatg cctctgggag
      301 taaatacgag agtggaacgc cgactccacg cttgcaatat ggagacaacc aatctgagtt
      361 ttcacacttc aaaaacaatg aaaagaagtt gagcagaaaa tggatcaaca acctcaaggg
      421 caaggaaatg aactctggac agtaccaacc agacactaaa cttgaaacag aaatcactca
      481 ggcatccctt gaagaattga atgccctgca gtctttctgc accgttaaga taaacctgat
      541 ccatcgtagt gcgacctcta aggggaaaaa gagcagcaga cataaaaagc tgcagcttgg
      601 atcggatgca gaggctccag aggtagatgc cttaaactgt actgtccccg atgagcttct
      661 gaacagaatc tattttaaaa acatgaggac aacacccaac gaggtggtaa cagctaagca
      721 acacatttct tctcggtgtc ccaactgtaa caggaaaaga gcagaactgg cccaatctgc
      781 cttcctgaaa cagaagaaga ctttactgga gtcacttcta ctccaagaga aaatagatga
      841 acatcttcat atgaaagact ttcttaccct tattggagaa atacatcaga gccttcccag
      901 gctttccgat gaccccagaa taatctggga aagactgaag gagaaaagtc aaattggtta
      961 ctctggtttt gaaaggagca gagcatttgg cctgaccgtt agcacgaccg ttatcgcgag
     1021 accctgagcc accagtcagc tcgcagtggt gctcgcggca gagagtgtgg tgagaggcga
     1081 gaggcggttg cagggcccgg gacaggccga gggccgggtc ccgcagagcc ccagggccct
     1141 caccgcagcc acccgctagc caggcccaga ccttgaagcg aacccctccc ccatcccaac
     1201 gtctgcaacc taatggcggc gggcggtctt catgggtcgc agtccgtgga ggcctcagca
     1261 actggagtat atggacactg ccgttgaggt aacagcttca acctgcttca gtctctccat
     1321 tcaggtttca aaagttggtg cagcttagat cagttgtctc cccctaggag gtggccagag
     1381 gccagggtta agttgcacgg acattgcagg tcattagttc aggtccacct cagtggttgg
     1441 gctcttctca aagaagggca atttctgtga gctggggatt cacctgatgg gcatttgcta
     1501 caacacgtat tcctgtcgat cgtatacaaa tgattctgtc caggttaaat gaaaagcctg
     1561 agggccggct tgggtccggg ccggctgggt cctggccgcc tggctccctc attgatgatg
     1621 gctgggcaga gtctggggac ctggccctga gggcgctgcc acctgagatc tggcccctca
     1681 cccaggcctg gacgctggcg ggaggactca gactgggtgc tggatgaaag ctcctgggca
     1741 gggtaactgg cccgcgcagg gaccccctcc tgtaagccag ggcctggacc tcggagggtg
     1801 aaagttgagc cttgggacct tgccctttct tgtcagaaca gagaataaca tttgtttcga
     1861 tggaggttta taagaacaca gtgacctggc ctcaagaaca aaggatctaa caccaagaag
     1921 tttgtaacaa ctaaccatgc ccctccctat aaaagggcta taaaagggct ttgctgaaag
     1981 ctttccaggt gtccagggtt tttaaggcat gagccaccag tctccttgca tggccctgca
     2041 ataaaccttt ctctgctcca aaccctgatg ttttggtatt gtttggccgc agtgtgtgct
     2101 gggctctcgg acttgcgttt cataatattt ctacaggtac tctggaaact taagagttta
     2161 ctgtgcttcc ttcacagatt tgaggactaa agactttcca cccagtattt tcagattcta
     2221 gagggcaaca ttttatagtt ggaatagtta caaagttttt ataacaacgc aggagagaga
     2281 tgctggcaat ttggactagg gttttgacag tacagataga aatagagatc taagaagtac
     2341 tcaggaggta ataattgaca ttctttggtg aagaaatgga tatggggggg ttaataaaag
     2401 gtaaatgtta agaatgggct tccctggtgg cgcagtggtt gagagtccgc ctgccgatgc
     2461 aggggacacg ggttcatgcc ccagtccggg aagatcccac atgccgcaga gcggctgggc
     2521 ccgtgagcca tggccgctga gcctgcgcgt ccggagcctg tgctccacaa agggagaggc
     2581 cacaacagtg ggaggcccgc gtacctcaaa aaaaaaaaaa agaatgttac taagtttctg
     2641 actggtgcat ttggatgaat gataattcat taagatagga gcattggaag acgatgatgt
     2701 ttgattaaga gggtgattat ttggacatcg ttagtttgag gaatatttga gacattctta
     2761 ctgagaggtt gagaaacatt tggttatttg tgcttgcgat ctggagaaaa ggtcttgagg
     2821 gggtggggat cattggcata tatgtcatga tatgtgagca tatatgtgag ctcttctaga
     2881 agaaaggaga atgacaggag aagaagggct atgaccagct cctgagaact tctacccacc
     2941 aattaatggc tgggtagagg agaataagag agcaaaggag gttgagaaga agtcatcata
     3001 gaaggataaa ggaaaccagg aaagagttgt atcagagaga ccgaagaaag agaacatttc
     3061 aagaaggatg ggttgtctaa gcatgccaat gcaacagagt tcacagatga tttagtcatg
     3121 tgttggcttc tttgacttaa caacagcaac ttcataaaag ttgggctgac tgacagtaga
     3181 ttgaggaata aatgtaagct aaggaaatga ggaatacagg tatagactgc ttgaagttta
     3241 gctgtggagg gaaagcagga gaggtaattt ttctatatgt ctaacactta agctatcacg
     3301 gtcaaaaatt tgtaaaaatc agcaaaaaaa tagcctttgt atcagcaaaa aataaccttt
     3361 gtatcatgtc aatattactc tttgccttta gaccttcatt tatgtattaa gatactcttt
     3421 ttttccccaa aaaacttagt gtattttctc ttagtcattc ctaaataaaa tgggaaataa
     3481 atcattacca ttttcacagt aactttttat tgaaattcac gttacatctt gctttatctt
     3541 tgccatctta atatattcac atttctcata atcaaaacgc tgaataattt ctccattaag
     3601 ggtcataatt caccctttag tcaactaagt cttccggtcc atgcacaaga gatttttaga
     3661 atttgtttag gtcttcttta attttgaaag aaatgtttca tagtcttcag catacaaaag
     3721 ttgtgtgcct cttttattga atttattcct aagtatttta ctccattgtt tgctattgta
     3781 agtgaatttt ttccaatcca gtttcttttt ggatgttcat tgctagtgca tggaaataca
     3841 actgattttt gcctgttgat tttgtatcct gaaactgctg ctgaattcac tgatttgcac
     3901 taacagtttt aaaaaatgga ttgtgtggga ttttatagct agaagattat gtcatttgta
     3961 aacagagata gttttacttc ttgcttttga tttggatact gtttttttct tcttgcctaa
     4021 ttgccctggc tctaacttcc agtactataa tgaatagaag tggtgaagtg ggcattttgt
     4081 cttgttcctg atcttagggg aagagctttc agactttcac cattgagtat gttagttgtg
     4141 ggttttccat aaatggtctt tttcattttg aggaagttcc cttctattct tagtttattg
     4201 aatgttctta tttcattaaa gggtgtttca tcagtt
//
LOCUS       XM_032618160            7498 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DLC1 Rho GTPase activating protein
            (DLC1), mRNA.
ACCESSION   XM_032618160
VERSION     XM_032618160.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-314               VOSU01000013.1     21033530-21033843
            315-1460            VOSU01000013.1     21044933-21046078
            1461-1517           VOSU01000013.1     21132605-21132661
            1518-1518           "N"                1-1
            1519-1571           VOSU01000013.1     21132662-21132714
            1572-1572           "N"                1-1
            1573-1610           VOSU01000013.1     21132715-21132752
            1611-1751           VOSU01000013.1     21140022-21140162
            1752-1785           VOSU01000013.1     21214979-21215012
            1786-1857           VOSU01000013.1     21396632-21396703
            1858-1939           VOSU01000013.1     21401891-21401972
            1940-2003           VOSU01000013.1     21407770-21407833
            2004-3427           VOSU01000013.1     21409548-21410971
            3428-3604           VOSU01000013.1     21411453-21411629
            3605-3764           VOSU01000013.1     21414065-21414224
            3765-3963           VOSU01000013.1     21414337-21414535
            3964-4177           VOSU01000013.1     21416206-21416419
            4178-4292           VOSU01000013.1     21418206-21418320
            4293-4511           VOSU01000013.1     21419931-21420149
            4512-4729           VOSU01000013.1     21420952-21421169
            4730-4903           VOSU01000013.1     21421899-21422072
            4904-7498           VOSU01000013.1     21423045-21425639
FEATURES             Location/Qualifiers
     source          1..7498
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7498
                     /gene="DLC1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 51 long SRA reads, 27 Proteins,
                     and 96% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746647"
     CDS             438..5024
                     /gene="DLC1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: rho GTPase-activating
                     protein 7"
                     /protein_id="XP_032474051.1"
                     /db_xref="GeneID:116746647"
                     /translation="MSVAIRKRSWEEHVTQWMGQPFNSDDCNTACHHGLVADSLQASM
                     EKDATLNVDRKERCVSLPDCCHGSELRDIPGKPMGHISKEVDEDDSHEGEDQFLSLEA
                     STETLVHVSDEDTDSDLYLTDDKQILTTQGPKTSDQHSIKGAGSLVKTLPIMESNQGS
                     YDSWGMAGGADLVLVEEKGDRKVVDMVSKSLELCKDISLSEIKDASKMNACDSLNVKD
                     IVPEKQLLNSAVIAQHRRKPDFPKDEHERNTCNAVQDEFLAIPCADRGLPLLKTDSGS
                     CLLQPPSCPSGMSAENGLEKSGFSEHQNRSLPKVNSGDGMQCLHIKETLATHEPTDNQ
                     VRLRKRKEIREDRDRVRLDSMLLLIMXLDQLDQDIENALSTSSSXSSTPTNLRRQVPD
                     LESGSESGADNTSVNQTQINLSSNTESADLTSSTSVASSGTKPKSMAIPGTSEKEKAE
                     IEAKEACDWLRAAGFPQYAQLYEDLLFPIDISLVKREHDFLDRDAIEALCRRLNTLNK
                     CAVMKLEISPHRKRSEDSDEDEPCAISAKWTFQRDSKRWSRLEEFDVFSPKQDPVPGS
                     PDDPHLKNAPSRESVLTDLSERQEVASVRSLSSTSSLATQATHLGGAATARTNSVTSV
                     CSSGTFVGNDDSFCSLPSPKELSSFSFSVKGHEKNTKSKTHSLLKRMESLKLKGSHHS
                     KHKVPSKLGLIISGPILQEGVDEEKLKQLNCVEISALNGNRINVPVVRKRSVSNSTQT
                     SSSSSQSETSSNVSTPSPVTRTRSLSACNKRGGMYLEGFDPFNQSTFNNVMEQNFKNC
                     ESYPEDAVFYIPEDHKPGTFPKALSNGNFSPSGNNSSVNWRTGSFHGPGHISLRRENS
                     SDSPKELKRRNSSSSMTSRLSIYDNVPGSILYSSSGDLADLENEDIFPELDDILYHVK
                     GMQRIVNQWSEKFSDEGDSDSALDSVSPCPSSPKQIHLDVDNDRATPSDLDSTGNSLN
                     ETEEPSDIPERRDSGVGASLTRSSRHRLRWHSFQSSHRPSLNSVSLQINCQSVAQMNL
                     LQKYSLLKLTALLEKYTPSNKHGFSWAVPKFMKRIKVPDYKDRHVFGVPLTVNVQRTG
                     QPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNESAIDCVNYEGQSAYDV
                     ADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTL
                     LYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKD
                     LNENLAATQGLAHMIAECKKLFQVPEEMSRCRNSYTEQELKPLTLEALGRLCNDESAS
                     YQHFLQDCVDSLFKEVKEKFKGWVSYSTSEQAELSYKKVSEGPPLRLWRATTEVPASP
                     EEILKRLLKEQHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTN
                     LPKGACALLLTSVDHDRAPVVGVRVNVLLARYLIEPCGSGKSKLTYMCRADLRGHMPE
                     WYTKSFGHLCAAEVVKIRDSFSNQSTETKDTKSR"
     misc_feature    1797..1976
                     /gene="DLC1"
                     /note="SAM domain of DLC1 subfamily; Region: SAM_DLC1;
                     cd09591"
                     /db_xref="CDD:188990"
     misc_feature    order(1827..1829,1836..1838,1842..1844)
                     /gene="DLC1"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:188990"
     misc_feature    1860..1865
                     /gene="DLC1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:188990"
     misc_feature    3651..4307
                     /gene="DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; Region: RhoGAP_DLC1; cd04375"
                     /db_xref="CDD:239840"
     misc_feature    order(3777..3779,3888..3890,3900..3902,4107..4109,
                     4116..4121,4245..4247)
                     /gene="DLC1"
                     /note="putative GTPase interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239840"
     misc_feature    3777..3779
                     /gene="DLC1"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     misc_feature    4380..4991
                     /gene="DLC1"
                     /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
                     ligand-binding domain superfamily; Region: SRPBCC;
                     cl14643"
                     /db_xref="CDD:472699"
     misc_feature    order(4539..4541,4545..4547,4551..4553,4578..4586,
                     4590..4595,4632..4634,4665..4667,4671..4673,4677..4679,
                     4683..4685,4722..4724,4728..4730,4734..4736,4767..4769,
                     4773..4775,4830..4835,4839..4841,4845..4847,4875..4877,
                     4881..4883,4887..4889,4893..4895,4923..4937,4941..4946,
                     4953..4961,4968..4970)
                     /gene="DLC1"
                     /note="hydrophobic ligand binding site [active]"
                     /db_xref="CDD:176854"
ORIGIN      
        1 agaggcagga aatgcttccc aggcaatctg ggcctggttg tggaggcccc ttttgcaaaa
       61 catcagtctg aatttactag acagaagtca ctaggaacgc cttgacagac tccggcttca
      121 gctaaggctc cctccagctg cggaggctgt ttttgttaga atcacacact gcgcagaact
      181 gcttagaata gagccatgat ctcaaccacg aaatgtgaac ttatattttg gagaaactaa
      241 cggggacgga ctcctttcct aggctgagtg ttgaagcatg tcttgccttg gcgattcagc
      301 tcctcctcgt ctaggtggtg caatgacaaa acttactctc ttcttcaatc agtgaatttg
      361 aagtaatctt tcatcgtttc atctccttta gtctcatatg gaatgtatcc ctctatctgt
      421 tgttaaacta cgatgacatg tctgtagcta tcagaaagag aagctgggaa gaacatgtga
      481 cccaatggat gggacagcct tttaattctg atgattgtaa cacagcatgt catcatggac
      541 tagtagctga cagcttgcag gcaagtatgg aaaaagatgc aactctaaat gtggaccgca
      601 aagaaaggtg tgtttcacta ccagactgct gtcatggctc agagctgaga gatattcctg
      661 ggaagccaat gggtcacatt tcaaaggagg tggatgaaga tgacagccat gaaggtgaag
      721 atcagtttct ttctctggag gccagcacgg aaacactagt gcatgtttct gacgaggata
      781 ctgattctga tctatatctt acagatgata aacagatttt aactactcaa gggcctaaaa
      841 cgtcagacca acatagcatc aaaggagcag gctccttagt aaagacgctg cccatcatgg
      901 aaagtaacca aggttcttat gactcctggg gaatggctgg tggagctgat ttagtgctgg
      961 tagaggaaaa gggggacaga aaagttgttg acatggtgag taaaagcctg gagctttgta
     1021 aggatataag cctaagtgaa ataaaagatg catccaaaat gaatgcatgt gactctttga
     1081 atgtgaaaga tattgtgccg gaaaagcaat tgcttaattc tgctgtaatt gctcagcatc
     1141 gaaggaaacc cgacttccct aaagatgaac atgaaagaaa cacctgcaat gcagtacaag
     1201 atgagttcct ggctattcct tgtgcagaca gaggactgcc attattaaaa acagattctg
     1261 gaagctgcct tctgcagcct ccttcctgcc ctagtggaat gtcagctgaa aatggcctgg
     1321 agaagagtgg tttctcagaa catcaaaaca gaagtcttcc aaaggtcaac tcaggagatg
     1381 gcatgcagtg tttacacata aaggagactc tggccaccca tgaacccaca gataaccaag
     1441 tcagacttcg taaaagaaag gaaataagag aagatcgaga tagggtgcgg ctagactcga
     1501 tgttgttgct gatcatgnaa ctggaccagc ttgatcagga cattgagaac gctctcagca
     1561 ccagctcctc tncgtccagc acaccaacca accttcggcg gcaagtccct gatctggaat
     1621 caggatctga gagtggagca gataacactt ctgtaaatca gacacaaata aatctgtctt
     1681 ctaacaccga gtccgctgac ctaacatctt ccacctcagt ggccagttct ggaaccaaac
     1741 ccaagtctat ggctattcca ggtacttcag agaaggaaaa ggctgaaatt gaagccaaag
     1801 aagcttgtga ttggctacgg gcggcaggat tcccccagta cgcccagttg tatgaagatc
     1861 tcctgttccc cattgatatt tccttggtca agagagagca tgattttttg gacagagatg
     1921 ctattgaggc tttatgcagg cgtctgaata ctttaaacaa atgcgcggtg atgaagctgg
     1981 aaattagtcc tcatcggaag agaagtgagg attcggacga ggatgagcct tgcgcgataa
     2041 gcgccaaatg gactttccag agggacagca agaggtggtc ccggcttgaa gagttcgatg
     2101 tcttttctcc aaagcaggac cccgtccctg ggtccccaga cgatccccac ctgaagaacg
     2161 cccccagccg tgaaagcgtg ctgacggacc tcagcgagcg ccaggaggtg gcttctgtcc
     2221 gcagcctcag cagcaccagc agcctcgcca cgcaagccac ccacctcggg ggcgcggcga
     2281 cggcccggac taactccgtc accagcgtct gctcctccgg caccttcgta ggcaacgatg
     2341 actccttctg cagcctgccc tctcccaagg aactgtccag cttcagcttc agcgtgaaag
     2401 gccacgagaa gaacaccaag tccaagacgc acagcctgct gaaacgcatg gagagcctga
     2461 agctcaaggg ctcccaccac agcaagcaca aggtgccgtc caagctgggg ctgatcatca
     2521 gcgggcccat cctgcaggag ggggtggacg aggagaagct caagcagctg aactgtgtgg
     2581 agatctccgc cctcaacggc aaccgcatca acgtccccgt ggtgcggaag aggagcgtct
     2641 ccaactccac gcagacgagc agcagcagca gccagtccga gaccagcagc aacgtcagca
     2701 cgcccagtcc cgtcaccagg acccggagcc tcagtgcctg caacaagcgg ggaggcatgt
     2761 acctagaggg cttcgatccg ttcaatcagt ccacattcaa caacgttatg gaacagaact
     2821 ttaaaaactg cgagagctac ccggaggacg cggtgttcta catcccagaa gatcacaagc
     2881 ctggcacttt ccccaaagcc ctctccaacg gcaacttctc tccctcaggg aataacagct
     2941 ctgtgaactg gaggactgga agcttccacg gccctggtca tatcagcctg aggagggaaa
     3001 acagcagcga cagccccaag gaacttaaga gacgcaattc ctcaagctcc atgaccagcc
     3061 gcctgagtat ctatgacaac gtgcctggct ccatcctcta ttccagctcc ggtgacctgg
     3121 ccgacctgga gaacgaggac atcttccccg agctggacga catcctctac cacgtgaagg
     3181 ggatgcagag gatagtcaac cagtggtcgg agaaattttc agacgaggga gactcagact
     3241 cggccctgga ctcggtctct ccatgcccgt cctcgcccaa gcagatacac ctggacgtcg
     3301 acaatgaccg agccaccccc agcgacctgg acagcacggg caactcactg aacgaaaccg
     3361 aggagccctc agacatcccg gaaaggaggg attctggggt cggggcctcc ctgactaggt
     3421 ccagcaggca caggctgaga tggcacagtt tccagagctc tcatcggccg agcttaaact
     3481 ctgtatcgct gcagattaac tgccaatctg tggcccagat gaacctgctg cagaaatact
     3541 ccctcctgaa gttgaccgcc ctgctggaga aatacacgcc ttctaataag catggtttta
     3601 gctgggctgt gcccaagttt atgaaaagga tcaaggttcc agactacaag gaccggcatg
     3661 tattcggggt ccctctgacg gtcaacgtgc agcgcacagg acagcccctc ccccagagca
     3721 ttcagcaggc catgcgctac ctccgcaacc attgtctgga tcaggttgga ctcttcagaa
     3781 aatcaggtgt caaatcccgg attcaggctc tgcgccagat gaatgaaagc gccatagatt
     3841 gtgtcaacta tgaggggcag tctgcttatg atgtggcaga catgttgaag cagtattttc
     3901 gagatcttcc tgagccacta atgacgaaca aactctcgga aacctttctg cagatctacc
     3961 aatatgtgcc caaggaccag cgcctccagg cgatcaaggc cgccatcatg ctcctgcctg
     4021 acgagaacag ggaggtcctg cagacgctcc tctacttcct gagcgatgtc acagcagctg
     4081 tgaaggagaa ccagatgact cccaccaact tggccgtgtg cttggcgcct tccctcttcc
     4141 acctcaacac cctcaagaga gagaattcct ctccaagggt aatgcaaaga aaacaaagct
     4201 tgggaaaacc agatcagaaa gatttgaatg aaaatcttgc tgccactcaa gggctagccc
     4261 atatgattgc tgagtgcaag aagcttttcc aggttcctga ggaaatgagc cgatgtcgaa
     4321 attcctacac cgaacaagag ctgaagccac ttaccctaga agcgttggga cgcctttgta
     4381 atgatgagtc agccagctac caacacttcc tccaggactg cgtggacagc ctgtttaaag
     4441 aggtcaaaga gaaattcaaa ggctgggtca gctactctac atctgagcag gctgagctat
     4501 cctataagaa ggtgagtgaa ggaccccctc taaggctttg gagggcaacc actgaagtcc
     4561 ctgcatcgcc tgaggaaatc ttaaagcgcc tacttaaaga gcagcacctc tgggacgtgg
     4621 acttgttgga ttcaaaagtg attgagatcc tggacagcca aactgaaatt taccagtatg
     4681 tccaaaacag tatggcaccc catcctgctc gggactacgt tgttctgaga acatggagga
     4741 ctaatttacc caagggagct tgtgcccttt tactcacctc cgtggatcac gaccgggccc
     4801 ctgtggtggg agtgagggtc aatgtgctcc tggccaggta tctaatcgaa ccctgcgggt
     4861 cagggaaatc caaactcacc tacatgtgca gagctgactt aaggggccac atgccagagt
     4921 ggtacacgaa atcttttgga catttgtgtg cagctgaagt tgtaaagatc cgagactcct
     4981 tcagtaatca gagcactgaa accaaagaca ccaaatctag gtgattcccg aagcatgtcc
     5041 attatctggg cctttgtttc tagaaccctt gccagtcctt ggaagattgg gttcagtgtc
     5101 tgatcctgaa acaaaactac aagatgcagt gtgggaattg actatagtga tttgatacat
     5161 ttttaaagct gctttctatt cgtttaaggt ctgtattatg gaccttgact ggaatatatg
     5221 actgtgcaaa aaaaaaaaaa aaaaaggtat tcctattcga attgcttctg agaagcaaaa
     5281 ctataaatac attagggaag ataatgaaga gacgtcattc tcttgcgatg tcggtgtctg
     5341 tgtacgtgta cctatgtcat tttctttgca gtgtgtggag ggactggtgt atccactgga
     5401 atagttggtc ctctttgaca tattttctcg ctgagaagag caaagaaagg tttgcacaga
     5461 ggggtgtgtg tatgtgtgtt tgttgctagt cgaatggcat agatgtgtaa gttgggctac
     5521 agtgtctggc acactgagac acctccaaga aggatcttga tgcaacaggt tcagtttaac
     5581 ctggaatatc tgactaccca tggaattatc cagaaagtga acccatttat tttggggtgt
     5641 cagacaaccc acccttgtct gttgttgttt ttttttcctg agttagtaaa cactttccgt
     5701 ctccaccaac ctcttcttta ccttaaaagt gattgtaata aatttacttg gatagcccat
     5761 tttaaacaca gtttgtctct agacctgatt gcagatagca aagttgtttt tatccagtac
     5821 aggtgaattc agggatggaa attccccctt gctagctcca aagcacagtt ttgttttttg
     5881 gtttttaagt tgagatgtga aaactgagca ctcttaacat ctactcctga atcaaatatc
     5941 aacacctttt acgtgtccgc aaattctttg catttccacg ttaggagaaa ctctttaagg
     6001 cactatgtat gggaacacag gaaactgtgt cccaaggaaa cccttgtaaa tttaacccaa
     6061 tcacaaaagt tgcttgttgt tatggttatt aacagcattt ttgaaagccg catatgttaa
     6121 ttggatttgt ccttctcagc aaataggggt tttttaaaaa ttttgttttt cctacatttc
     6181 tttttcttct cctttatgaa ccccctggaa atatatttta gtagtaatgg aaagtagtaa
     6241 tcacagtaaa aaacaaacga acaatcaaaa acacactagt gcagggcttt ggaagggtgg
     6301 tctttataca ggttttactg taacggtaaa ggttggctca aaagacagta ttagtgaatt
     6361 tattttatat ggatcaaaag tgaataatgt atgaatgaga gttgtaagaa ggacttttat
     6421 tttgttataa tttagttacc attgtcagtg ttatttcaaa ggttctttga agaattaggg
     6481 ggcaggggac agatcagagt ttaatttgag tattttggat attagcgtgc ctcatgaaga
     6541 tatacttgta tattcaactt taatggcttt gagatttgta agagtatatg ttgtatatac
     6601 cattctatta agaaacatgt acgcctacct gtccactgtg ctttccaaca cagataaagc
     6661 atgataaaga ttattattta aaatatactt gtatttatac ctcagatatt cttttggatt
     6721 ttgtacctca aggctttttt ggtttgtttt ttttttgttt gttttttgct aatgtaaata
     6781 ccctttacat gaatacagtc taagtgaaaa aaaaagtaaa taagaggttt ataacttgct
     6841 ctatatctgt acagaatata atcaataagt gcactattaa atgtttaaag taagggaaac
     6901 gtctggcctg ctttccactg tatcacatct cactcccacc cgtaaagcca cagatggcaa
     6961 ggcataccat cctagcatca actaaaatga aaatacggat ttgctacagg aaaaatcgga
     7021 ctgcaaatca ttccaaggcc aaactgcaac tgagccactc actaacaaac aggaaaccct
     7081 ggtgaaggtt caggaagcac agagatgctc tccaaacaaa ggtctcgagg aaacgatact
     7141 gagaaagtta caagaataag caacagcaac tgaaagatgc tcataagcaa agccaaggtc
     7201 accgattcat tccacaaaag gtctctttcc cactgttttc ccactgtttg gctttcctgt
     7261 tgaaaggatt ccttacatat ttgaccagag gagaatgtga aggatgtgaa cattttcaag
     7321 aactctgctt taagccacct aaagtgatat cgccacaact tactaattgt gactaattgc
     7381 ctaggttgta agctctctga gagcagggct cttctacacg tctttataat cccctacagc
     7441 agctttcagt gttttgtact tgtaggcacc taataaattt attatttgcc aaatggaa
//
LOCUS       XM_032618162            2231 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon regulatory factor 2 (IRF2),
            transcript variant X1, mRNA.
ACCESSION   XM_032618162
VERSION     XM_032618162.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2231
                     /gene="IRF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746648"
     CDS             34..1083
                     /gene="IRF2"
                     /codon_start=1
                     /product="interferon regulatory factor 2"
                     /protein_id="XP_032474053.1"
                     /db_xref="GeneID:116746648"
                     /translation="MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARH
                     GWDVEKDAPLFRNWAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKG
                     NNAFRVYRMLPLSERPSKKGKKPKTEKEDRVKHIKQEPVESSLGLSNGVSDLSPEYAA
                     LTSAIKHEVDSTVNIIVVGQSHLDSNIEDQEIVTNPPDICQVVEVTTESDEQAVSMSE
                     LYPLQISPVSSYAESETTDSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRSTYLLPS
                     MATFVTSNKPDLQVTIKEESCPVPYNSSWPPFPDLPLAPSVTPAPSSSRPDRETRASV
                     IKKTSDITQARVKSC"
     misc_feature    52..369
                     /gene="IRF2"
                     /note="Interferon regulatory factor transcription factor;
                     Region: IRF; pfam00605"
                     /db_xref="CDD:459863"
     misc_feature    order(151..153,271..273,277..282,289..291)
                     /gene="IRF2"
                     /note="DNA sequence recognition sites [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238051"
     misc_feature    order(286..291,295..297,304..306)
                     /gene="IRF2"
                     /note="metal-binding site"
                     /db_xref="CDD:238051"
ORIGIN      
        1 ctgggttgtg tggcaagacg actgaagggc gccatgccgg tggagaggat gcgcatgcgc
       61 ccgtggctgg aagaacagat caactcaaac acaataccag ggctgaagtg gcttaacaag
      121 gaaaagaaga tttttcagat cccttggatg catgcagcta gacacgggtg ggatgtggaa
      181 aaagatgcac cgctctttag aaactgggcc atccatacag gaaagcatca accaggagta
      241 gataaacctg atccaaaaac atggaaggcg aattttcgat gtgccatgaa ctctctgcct
      301 gacattgaag aagtcaaaga taaaagcata aagaaaggaa acaacgcctt ccgagtctac
      361 cgaatgttgc ctttatctga acgaccttct aagaaaggaa agaaaccaaa gacagaaaaa
      421 gaagacagag tgaagcacat caagcaagaa ccagttgagt catctttggg gcttagtaat
      481 ggagtaagtg atctttctcc tgagtatgcg gccctgactt cagctataaa acatgaagtg
      541 gatagtacgg tgaacatcat agttgtagga cagtcacatc tggacagcaa cattgaggat
      601 caagagattg tcactaatcc accagacatc tgccaagttg tggaagtgac cactgagagt
      661 gatgaacagg cggtcagcat gagcgagctc taccccctgc agatctcccc cgtgtcttcc
      721 tacgcagaaa gcgaaactac cgatagtgtg cccagtgatg aagagagctc ggagggccga
      781 ccacactggc ggaagaggaa cattgaaggc aaacagtacc tcagcaacat ggggacacga
      841 agcacgtacc tgctacccag catggcgacc ttcgtcactt ccaacaagcc cgacctccag
      901 gtcaccatca aagaggagag ctgtcccgtg ccttacaaca gctcctggcc cccgttccca
      961 gacctccccc tcgccccctc cgtgacccca gcgcccagca gcagccggcc agaccgggag
     1021 acccgggcca gcgtcatcaa gaagacttcc gacatcaccc aggcccgcgt caagagctgt
     1081 taagccttcg acttcccctg gtggttgttg ggatttcttg gctttgtttt attgtttgtt
     1141 tgtattatat ttttctttct gacacctgtt ttagacgaat cttaagggaa aaagccttga
     1201 caatagaact ttgattgctg tgtccaactc cagtactgga gcttcttttt aactcaggac
     1261 tccagcccct tggtagacgg atatctctag agcctgctgg atctcccagg gctgctccct
     1321 caagttcaag gacgtcatag gaccaacacc cacacgggca gtgaggtgct gcattgcctg
     1381 cggtcaaggc cagcatggtg gaacggatgc ctctgaatgg aggagaaaat gtgaactagc
     1441 tggaattttt tattcttgtg aatatgtaca tagggcagta ctagcgacgt tgcagtctgc
     1501 ttctgcacct tatcttaaag cacttacaga tagaccttct cgtgaccctg ctctgtttca
     1561 tagcacagtc agcacccctc ttccctcctc ccctcccccc ttcccccctt cccatctcct
     1621 cctcttgctt tgcagcccct cccctcgttt gcctcccctt catcccaccc cctcccctca
     1681 ctcctctccc cggccctcct atccctttca ttttctttcc tccttttcct gccctcaaag
     1741 gctgtgttcc acatccctga ggaggagaag aaaatgaact tctccacaga tgtcccattt
     1801 taaaagactg ctttaaaaaa caaaacaaaa aaaaaagaaa agaaaaaaga aaatctttct
     1861 aatctgctat gcttgaatgc cacgcggtac aaaggaaaac tatcttggag agattatgca
     1921 aattcccaga tttgaagaga aaaatactct aattctaacc agagcaagct tttttatttt
     1981 ttataccggg gaatatttta ttcaaggtaa aattctaaag aaaatataat tgttttttat
     2041 cttttctaca gcaaatttat aattttaaga ttccttttct tgtttatcgg cagttgttat
     2101 tacatccttg tggcacattt tttttttttt ttaattttgt aaaggtgaaa aagcttttat
     2161 gagctcatgt agcaatcaaa ttatcctgtg gattgataat aaatgaatat gatatatagt
     2221 taaattttta a
//
LOCUS       XM_032618163            2386 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon regulatory factor 2 (IRF2),
            transcript variant X2, mRNA.
ACCESSION   XM_032618163
VERSION     XM_032618163.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2386
                     /gene="IRF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 4 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746648"
     CDS             189..1238
                     /gene="IRF2"
                     /codon_start=1
                     /product="interferon regulatory factor 2"
                     /protein_id="XP_032474054.1"
                     /db_xref="GeneID:116746648"
                     /translation="MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARH
                     GWDVEKDAPLFRNWAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKG
                     NNAFRVYRMLPLSERPSKKGKKPKTEKEDRVKHIKQEPVESSLGLSNGVSDLSPEYAA
                     LTSAIKHEVDSTVNIIVVGQSHLDSNIEDQEIVTNPPDICQVVEVTTESDEQAVSMSE
                     LYPLQISPVSSYAESETTDSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRSTYLLPS
                     MATFVTSNKPDLQVTIKEESCPVPYNSSWPPFPDLPLAPSVTPAPSSSRPDRETRASV
                     IKKTSDITQARVKSC"
     misc_feature    207..524
                     /gene="IRF2"
                     /note="Interferon regulatory factor transcription factor;
                     Region: IRF; pfam00605"
                     /db_xref="CDD:459863"
     misc_feature    order(306..308,426..428,432..437,444..446)
                     /gene="IRF2"
                     /note="DNA sequence recognition sites [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238051"
     misc_feature    order(441..446,450..452,459..461)
                     /gene="IRF2"
                     /note="metal-binding site"
                     /db_xref="CDD:238051"
ORIGIN      
        1 gcagtttcct ctccttgttt tgctttcgat ctggactgtt ctcaggcaag ccggggagta
       61 acttttagtt ttgttcctgc gattattcaa ctgacgggct ttcatttcca tttcacacat
      121 cctagcaaca cttaagcctt gcggaattgt attgatagcg tgaaaaagca cactgagaga
      181 agggcgccat gccggtggag aggatgcgca tgcgcccgtg gctggaagaa cagatcaact
      241 caaacacaat accagggctg aagtggctta acaaggaaaa gaagattttt cagatccctt
      301 ggatgcatgc agctagacac gggtgggatg tggaaaaaga tgcaccgctc tttagaaact
      361 gggccatcca tacaggaaag catcaaccag gagtagataa acctgatcca aaaacatgga
      421 aggcgaattt tcgatgtgcc atgaactctc tgcctgacat tgaagaagtc aaagataaaa
      481 gcataaagaa aggaaacaac gccttccgag tctaccgaat gttgccttta tctgaacgac
      541 cttctaagaa aggaaagaaa ccaaagacag aaaaagaaga cagagtgaag cacatcaagc
      601 aagaaccagt tgagtcatct ttggggctta gtaatggagt aagtgatctt tctcctgagt
      661 atgcggccct gacttcagct ataaaacatg aagtggatag tacggtgaac atcatagttg
      721 taggacagtc acatctggac agcaacattg aggatcaaga gattgtcact aatccaccag
      781 acatctgcca agttgtggaa gtgaccactg agagtgatga acaggcggtc agcatgagcg
      841 agctctaccc cctgcagatc tcccccgtgt cttcctacgc agaaagcgaa actaccgata
      901 gtgtgcccag tgatgaagag agctcggagg gccgaccaca ctggcggaag aggaacattg
      961 aaggcaaaca gtacctcagc aacatgggga cacgaagcac gtacctgcta cccagcatgg
     1021 cgaccttcgt cacttccaac aagcccgacc tccaggtcac catcaaagag gagagctgtc
     1081 ccgtgcctta caacagctcc tggcccccgt tcccagacct ccccctcgcc ccctccgtga
     1141 ccccagcgcc cagcagcagc cggccagacc gggagacccg ggccagcgtc atcaagaaga
     1201 cttccgacat cacccaggcc cgcgtcaaga gctgttaagc cttcgacttc ccctggtggt
     1261 tgttgggatt tcttggcttt gttttattgt ttgtttgtat tatatttttc tttctgacac
     1321 ctgttttaga cgaatcttaa gggaaaaagc cttgacaata gaactttgat tgctgtgtcc
     1381 aactccagta ctggagcttc tttttaactc aggactccag ccccttggta gacggatatc
     1441 tctagagcct gctggatctc ccagggctgc tccctcaagt tcaaggacgt cataggacca
     1501 acacccacac gggcagtgag gtgctgcatt gcctgcggtc aaggccagca tggtggaacg
     1561 gatgcctctg aatggaggag aaaatgtgaa ctagctggaa ttttttattc ttgtgaatat
     1621 gtacataggg cagtactagc gacgttgcag tctgcttctg caccttatct taaagcactt
     1681 acagatagac cttctcgtga ccctgctctg tttcatagca cagtcagcac ccctcttccc
     1741 tcctcccctc cccccttccc cccttcccat ctcctcctct tgctttgcag cccctcccct
     1801 cgtttgcctc cccttcatcc caccccctcc cctcactcct ctccccggcc ctcctatccc
     1861 tttcattttc tttcctcctt ttcctgccct caaaggctgt gttccacatc cctgaggagg
     1921 agaagaaaat gaacttctcc acagatgtcc cattttaaaa gactgcttta aaaaacaaaa
     1981 caaaaaaaaa agaaaagaaa aaagaaaatc tttctaatct gctatgcttg aatgccacgc
     2041 ggtacaaagg aaaactatct tggagagatt atgcaaattc ccagatttga agagaaaaat
     2101 actctaattc taaccagagc aagctttttt attttttata ccggggaata ttttattcaa
     2161 ggtaaaattc taaagaaaat ataattgttt tttatctttt ctacagcaaa tttataattt
     2221 taagattcct tttcttgttt atcggcagtt gttattacat ccttgtggca catttttttt
     2281 tttttttaat tttgtaaagg tgaaaaagct tttatgagct catgtagcaa tcaaattatc
     2341 ctgtggattg ataataaatg aatatgatat atagttaaat ttttaa
//
LOCUS       XM_032618164            2537 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon regulatory factor 2 (IRF2),
            transcript variant X3, mRNA.
ACCESSION   XM_032618164
VERSION     XM_032618164.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2537
                     /gene="IRF2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746648"
     CDS             340..1389
                     /gene="IRF2"
                     /codon_start=1
                     /product="interferon regulatory factor 2"
                     /protein_id="XP_032474055.1"
                     /db_xref="GeneID:116746648"
                     /translation="MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARH
                     GWDVEKDAPLFRNWAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKG
                     NNAFRVYRMLPLSERPSKKGKKPKTEKEDRVKHIKQEPVESSLGLSNGVSDLSPEYAA
                     LTSAIKHEVDSTVNIIVVGQSHLDSNIEDQEIVTNPPDICQVVEVTTESDEQAVSMSE
                     LYPLQISPVSSYAESETTDSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRSTYLLPS
                     MATFVTSNKPDLQVTIKEESCPVPYNSSWPPFPDLPLAPSVTPAPSSSRPDRETRASV
                     IKKTSDITQARVKSC"
     misc_feature    358..675
                     /gene="IRF2"
                     /note="Interferon regulatory factor transcription factor;
                     Region: IRF; pfam00605"
                     /db_xref="CDD:459863"
     misc_feature    order(457..459,577..579,583..588,595..597)
                     /gene="IRF2"
                     /note="DNA sequence recognition sites [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238051"
     misc_feature    order(592..597,601..603,610..612)
                     /gene="IRF2"
                     /note="metal-binding site"
                     /db_xref="CDD:238051"
ORIGIN      
        1 gcagtttcct ctccttgttt tgctttcgat ctggactgtt ctcaggcaag ccggggagta
       61 acttttagtt ttgttcctgc gattattcaa ctgacgggct ttcatttcca tttcacacat
      121 cctagcaaca cttaagcctt gcggaattgt attgatagcg tgaaaaagca cactgagaga
      181 cggaaaatgc tgaggttcat aaatattaat actgattttt ggaggaacag tcggcgctgt
      241 tatggatcat ctgattttag gggaagcagg ttctgctgct gttgctgctg ctactggggc
      301 tgctgaggct gcgaggagga ggaggaggag aagggcgcca tgccggtgga gaggatgcgc
      361 atgcgcccgt ggctggaaga acagatcaac tcaaacacaa taccagggct gaagtggctt
      421 aacaaggaaa agaagatttt tcagatccct tggatgcatg cagctagaca cgggtgggat
      481 gtggaaaaag atgcaccgct ctttagaaac tgggccatcc atacaggaaa gcatcaacca
      541 ggagtagata aacctgatcc aaaaacatgg aaggcgaatt ttcgatgtgc catgaactct
      601 ctgcctgaca ttgaagaagt caaagataaa agcataaaga aaggaaacaa cgccttccga
      661 gtctaccgaa tgttgccttt atctgaacga ccttctaaga aaggaaagaa accaaagaca
      721 gaaaaagaag acagagtgaa gcacatcaag caagaaccag ttgagtcatc tttggggctt
      781 agtaatggag taagtgatct ttctcctgag tatgcggccc tgacttcagc tataaaacat
      841 gaagtggata gtacggtgaa catcatagtt gtaggacagt cacatctgga cagcaacatt
      901 gaggatcaag agattgtcac taatccacca gacatctgcc aagttgtgga agtgaccact
      961 gagagtgatg aacaggcggt cagcatgagc gagctctacc ccctgcagat ctcccccgtg
     1021 tcttcctacg cagaaagcga aactaccgat agtgtgccca gtgatgaaga gagctcggag
     1081 ggccgaccac actggcggaa gaggaacatt gaaggcaaac agtacctcag caacatgggg
     1141 acacgaagca cgtacctgct acccagcatg gcgaccttcg tcacttccaa caagcccgac
     1201 ctccaggtca ccatcaaaga ggagagctgt cccgtgcctt acaacagctc ctggcccccg
     1261 ttcccagacc tccccctcgc cccctccgtg accccagcgc ccagcagcag ccggccagac
     1321 cgggagaccc gggccagcgt catcaagaag acttccgaca tcacccaggc ccgcgtcaag
     1381 agctgttaag ccttcgactt cccctggtgg ttgttgggat ttcttggctt tgttttattg
     1441 tttgtttgta ttatattttt ctttctgaca cctgttttag acgaatctta agggaaaaag
     1501 ccttgacaat agaactttga ttgctgtgtc caactccagt actggagctt ctttttaact
     1561 caggactcca gccccttggt agacggatat ctctagagcc tgctggatct cccagggctg
     1621 ctccctcaag ttcaaggacg tcataggacc aacacccaca cgggcagtga ggtgctgcat
     1681 tgcctgcggt caaggccagc atggtggaac ggatgcctct gaatggagga gaaaatgtga
     1741 actagctgga attttttatt cttgtgaata tgtacatagg gcagtactag cgacgttgca
     1801 gtctgcttct gcaccttatc ttaaagcact tacagataga ccttctcgtg accctgctct
     1861 gtttcatagc acagtcagca cccctcttcc ctcctcccct ccccccttcc ccccttccca
     1921 tctcctcctc ttgctttgca gcccctcccc tcgtttgcct ccccttcatc ccaccccctc
     1981 ccctcactcc tctccccggc cctcctatcc ctttcatttt ctttcctcct tttcctgccc
     2041 tcaaaggctg tgttccacat ccctgaggag gagaagaaaa tgaacttctc cacagatgtc
     2101 ccattttaaa agactgcttt aaaaaacaaa acaaaaaaaa aagaaaagaa aaaagaaaat
     2161 ctttctaatc tgctatgctt gaatgccacg cggtacaaag gaaaactatc ttggagagat
     2221 tatgcaaatt cccagatttg aagagaaaaa tactctaatt ctaaccagag caagcttttt
     2281 tattttttat accggggaat attttattca aggtaaaatt ctaaagaaaa tataattgtt
     2341 ttttatcttt tctacagcaa atttataatt ttaagattcc ttttcttgtt tatcggcagt
     2401 tgttattaca tccttgtggc acattttttt ttttttttaa ttttgtaaag gtgaaaaagc
     2461 ttttatgagc tcatgtagca atcaaattat cctgtggatt gataataaat gaatatgata
     2521 tatagttaaa tttttaa
//
LOCUS       XM_032618165            4518 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X1, mRNA.
ACCESSION   XM_032618165
VERSION     XM_032618165.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4518
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4518
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             2333..3568
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X1"
                     /protein_id="XP_032474056.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKEFWVLHFRLQVDFCV
                     RCEIRVQFHSFAGRLCGLAALEAEPVADGPPVPLPHGPHLPHVVGVPGPLGQPGPQPL
                     PAALGALRGWAGPPHGPHQPLLDPQEDAAAAQPCGLELRARPPQRAGAAEEDEVAASA
                     PTVPAAPTPGRVSTDFHVAPSTTPERASGTESRRGDITARCAHSRELGLCAPSPQGGP
                     AWTGRTKACVRLIQQPRYF"
     misc_feature    2588..>2941
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
     misc_feature    <3059..3559
                     /gene="CLN8"
                     /note="EBNA-3B; Provisional; Region: PHA03378"
                     /db_xref="CDD:223065"
ORIGIN      
        1 cgggcgtggg ctcaggccgc ggttcgggcc gcggtgggag gggtgcagcc ggccggcccg
       61 cgggcagcga gcccgagaga ggacactggc agacgggccg agaccgtcca cggcgtgctc
      121 tctgtgggac ttgtttatat tttctgaatt ttgtttgttg agcgtgtatt ttaattttgg
      181 aaaaatatgt ttacaaactg tcgcagtata attctcaaaa tgttagaaac gtaattcctg
      241 agcaaacagg gagcacaggt caggttaaat cgcctaggaa ggacccggcg gaggaaagcc
      301 cgccagaggc tgccaccagg aatgctggtc ggggagggag ccactgggat tatcccctgg
      361 ggggagaggg gcgttacggt gcctcatcac cctatcagtg ttgctgggtt gacctcacag
      421 actgaagtct gggccggctg agacgcaggg gctgcggggc gggtctccga ggaccccgga
      481 ctggaggagc gggggtcctg gctctgcggc tgtgcgggga cggggacggg gacggggacg
      541 gggacggcgg cctcaggaga cacgaagaag ccctagggct gggctcgggg tgaacggggt
      601 gacccagtgc ccccgtgccg ggatgggtga ggggtgtggt cagggtgggt ggctgccgag
      661 ccctggagct ctgcctgcct ctggtctgtg ccgccttccg gagcagggcc tggccacgcc
      721 ctggggtgcc ccctagccac ggggcagccg ggccaccgca gggctccggg ggggccgcct
      781 gggttgctgc ggacccccac ccaaggcctg gcctcatccc atcatggctc aagtgggtca
      841 cccacctcac ctgtgtgtcc ccgggaccca gggcaacagg ttggaccaga ccagccggcc
      901 cagaagctct gtggaagcgg ctgtgtagga gggtgtgtcc gaggcgggtt tgagcagcga
      961 tccagatggg ggagagttga tagggattga agggcggcga gcattgggtt tttacaggaa
     1021 gttgtttctg tttctgtgat ggccccgagc gttccgccgc cactgatcgg tctcagctga
     1081 gtatttcagc gtctgacctt agcccgcctg catttctttc tgtagaaagg ttactagaag
     1141 gcttgaggac ccagaagccg ggctgaggtt tctcggtggt gaatttgaga tgacggtggt
     1201 ttttcctggg tctctggggc cttggagcct tcctcttcct tgggccttgg ctctgcgccc
     1261 cggcctccac cctggctggg cccacgcttc agaagcaggc ttctcccgcg tgctcggagc
     1321 ctgaggctgg cgggtggctc tttgtgctgt agcctcgctt gtccactctc cgttccctct
     1381 caggccctgc cccggccctc aggaccccac gtctgtctcc ttgtgcctct tggtgggagg
     1441 aggaaaaggg ctgtttcagg ccttctctcc aggataagca gggtttgttg gattggctta
     1501 catttaaaac cacctgcggc gcacagaaga gcctctcagg tcttcaggac actgcctgct
     1561 ttaggaaaag gaagccacta aaccctccct ccttggagtc acaggatctt acatctgggg
     1621 ggactggaat tcatgccggt tcagtggttc tgcacttgct tagagcgcct gggcacataa
     1681 gaaacaccca agcctggccc cgccccaggg cagcgaagtc aggaccttgg gagagggcct
     1741 gggcatcgtc ctcggtgtgg gaaggacaga cgaacctgca ggtgatctaa tgcacctggg
     1801 cccagagctc tgagtcctga tcatggtgca atccgaggcc ccactgggta gcttcttgat
     1861 ttgaggcaaa taactaaacc tgagctctct tctttccatt ggaaatgtac gactccctgt
     1921 ttagcaggtt aaacggccta actgaacgtg cctggcacgg agtaggtact tcatattagc
     1981 acccggcacc cactctgctg tatttatgtg tatttttcgt tcctgtagtc agacactgga
     2041 gtcctgtttt ccttgctccg aaatagtgga accaagatca gaacccactg ttttgttctt
     2101 tggtcccagt gccctggagt ccccccagcc ttcgtgaagg ggcacctata ccaaccactc
     2161 gccctgggca agcttgagtc attgttttag tcagagctct tcagagtctt ggggaccctc
     2221 ccgtttcaag gcagaggttc cacaggagcg tagagatgca gtcgtggcaa aatgggaagt
     2281 cgcccagacc gcgtgacagg ctcgtggaaa ggacaaggtg gaggatgggc gcatgagggt
     2341 cccggggccg tggcctggtg cagcgtgtgg accccggccc agcctgtacg acgtcggcag
     2401 catgagcctc ccgagcagcg ggccggcggg cagcgtcttt gacctggact gcacctccgg
     2461 gcaggtccgc tgggcgctgg tggctgccgg ctgcaccttc tacctgggcg tcttcgtggc
     2521 ctgccaccag ctgtcatcct ccctgaacgc cacctaccgc tccctggggg cccgagagca
     2581 ggtcttctgg aacctggcgg ccacgcgcgc agtctttggc ctccagggca ccgcggcggg
     2641 gctacgggcg ctgctgctgg accccgtgct gcaggccgac aaagtgcttg gccagcagaa
     2701 ctggtgctgg ttccacatca ccacggcaac cggattcttc ctctttgaga acctcgcgct
     2761 ccatgtgtcc aatgcgctgt tccacacatt cgacgggttc ctggccgtcc accacctctt
     2821 cgccttcctc gggtttctcg gctccgtggt caacctccaa gcgggccact acctgcccat
     2881 gatcacgctg ctcctggaga tgagcacgcc cttcacctgc atctcctgga tgctcctaaa
     2941 ggagttttgg gtcttacatt tccgccttca agttgatttt tgtgtaaggt gtgagataag
     3001 ggttcagttt cattcttttg caggccggct gtgcggactc gctgctctgg aggctgaacc
     3061 agtggctgat ggtccacctg ttccactgcc gcatggtcct cacctaccac atgtggtggg
     3121 tgtgcctggg ccactgggac agcctggccc gcagcctctt cccgccgcac tgggcgctct
     3181 tcgtggttgg gctgggcctc ctcacggtcc tcatcaaccc ctactggacc cgcaagaaga
     3241 cgcagcagct gctcaaccct gtggactgga acttcgcgcc cggccgcccc aacgggccgg
     3301 cgccgccgaa gaagacgagg tagcggcctc ggccccgact gtccccgcgg cgccgacccc
     3361 aggccgcgtg agtactgact tccacgtggc accgagtact acacctgagc gcgcctcggg
     3421 gacagagtcc cgccgtggtg acatcacggc tcgatgtgct cattcccgcg agcttggcct
     3481 gtgtgcgccg tcgccccaag gagggcccgc gtggacgggt cgcactaaag cgtgtgtgcg
     3541 tcttattcaa cagccccgtt atttttagtt ggagagaact gtcccacgag aacataatcc
     3601 ggtcccttac cctgctgaca ttcccagggc tgagatgtaa gccgcgtctc cgcagcgcca
     3661 tctcgtggtg agcgcggagc atcggcctgg cttgcggctg ggggaggcgg aggggtcttc
     3721 tcaccaggga agctcatccg gtgaagagtt ttggttccgt tttgtgtttc tctgttgaca
     3781 cattaagaga ggtgttagta atcagatttg tctagatttt agagctgttt ttaactaagt
     3841 ttcaaacagg tgccccgcca gaccctacct aaccccctgg ttggtgtctc tctgtaggtt
     3901 tcgccagacc ctaccccctg gttggtgtgt ctctaggttt caagtcgggg cattggtcac
     3961 tctccctgcg agctgtgggt ggacctggcc ccttggagtg cccggctgca gggccccctc
     4021 ctcacctccc ggtgacgagc ccgggcacca cctttaccgt gtggggcccc ggtggaatct
     4081 acacgccgac ccgcaatttt actgacgaat acgtactgac atcttattct tgccatgagt
     4141 gggcaattaa aatgaaaatc tcgtatttac tgaaagtgcc cttgaactgt ttttgaaaaa
     4201 cacatttgtt ggtcgtgaga atcacgtgta ccttgtgctt ggtctgtaac ttggcccctc
     4261 agaagggtgt gtgctgattt ctggtactgt gacttgactg tacgtaggtc aggagatgtg
     4321 atacctgctt gtgtcatttt gagaagtgtt tcaatcctag aaacatccag caaaccgtgt
     4381 ccctgctgag acttctctct ccctcgctga agaccccggg cacctgccac ccactctccc
     4441 gtccgcaagc ggtggtggtg gtggggggga gctggctgtg tttccagccg gtcagaactt
     4501 taataaagta accgatgt
//
LOCUS       XM_032618166            2601 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X2, mRNA.
ACCESSION   XM_032618166
VERSION     XM_032618166.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2601
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             416..1651
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X1"
                     /protein_id="XP_032474057.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKEFWVLHFRLQVDFCV
                     RCEIRVQFHSFAGRLCGLAALEAEPVADGPPVPLPHGPHLPHVVGVPGPLGQPGPQPL
                     PAALGALRGWAGPPHGPHQPLLDPQEDAAAAQPCGLELRARPPQRAGAAEEDEVAASA
                     PTVPAAPTPGRVSTDFHVAPSTTPERASGTESRRGDITARCAHSRELGLCAPSPQGGP
                     AWTGRTKACVRLIQQPRYF"
     misc_feature    671..>1024
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
     misc_feature    <1142..1642
                     /gene="CLN8"
                     /note="EBNA-3B; Provisional; Region: PHA03378"
                     /db_xref="CDD:223065"
ORIGIN      
        1 cggggtctcc gggtcccgtc ggcgtgttct cgtggagttg agagccccca gtcctggcgc
       61 ggaggagccc cgagttcccc gcgtgcggcc cgcggggctt ggcggccctg cctggactgt
      121 gggtggtggg gcggggtcca cctctccgtc ctcaggtgtg cagggcagag gctcaggtcg
      181 ccccatctgc agtgccctgg agtcccccca gccttcgtga aggggcacct ataccaacca
      241 ctcgccctgg gcaagcttga gtcattgttt tagtcagagc tcttcagagt cttggggacc
      301 ctcccgtttc aaggcagagg ttccacagga gcgtagagat gcagtcgtgg caaaatggga
      361 agtcgcccag accgcgtgac aggctcgtgg aaaggacaag gtggaggatg ggcgcatgag
      421 ggtcccgggg ccgtggcctg gtgcagcgtg tggaccccgg cccagcctgt acgacgtcgg
      481 cagcatgagc ctcccgagca gcgggccggc gggcagcgtc tttgacctgg actgcacctc
      541 cgggcaggtc cgctgggcgc tggtggctgc cggctgcacc ttctacctgg gcgtcttcgt
      601 ggcctgccac cagctgtcat cctccctgaa cgccacctac cgctccctgg gggcccgaga
      661 gcaggtcttc tggaacctgg cggccacgcg cgcagtcttt ggcctccagg gcaccgcggc
      721 ggggctacgg gcgctgctgc tggaccccgt gctgcaggcc gacaaagtgc ttggccagca
      781 gaactggtgc tggttccaca tcaccacggc aaccggattc ttcctctttg agaacctcgc
      841 gctccatgtg tccaatgcgc tgttccacac attcgacggg ttcctggccg tccaccacct
      901 cttcgccttc ctcgggtttc tcggctccgt ggtcaacctc caagcgggcc actacctgcc
      961 catgatcacg ctgctcctgg agatgagcac gcccttcacc tgcatctcct ggatgctcct
     1021 aaaggagttt tgggtcttac atttccgcct tcaagttgat ttttgtgtaa ggtgtgagat
     1081 aagggttcag tttcattctt ttgcaggccg gctgtgcgga ctcgctgctc tggaggctga
     1141 accagtggct gatggtccac ctgttccact gccgcatggt cctcacctac cacatgtggt
     1201 gggtgtgcct gggccactgg gacagcctgg cccgcagcct cttcccgccg cactgggcgc
     1261 tcttcgtggt tgggctgggc ctcctcacgg tcctcatcaa cccctactgg acccgcaaga
     1321 agacgcagca gctgctcaac cctgtggact ggaacttcgc gcccggccgc cccaacgggc
     1381 cggcgccgcc gaagaagacg aggtagcggc ctcggccccg actgtccccg cggcgccgac
     1441 cccaggccgc gtgagtactg acttccacgt ggcaccgagt actacacctg agcgcgcctc
     1501 ggggacagag tcccgccgtg gtgacatcac ggctcgatgt gctcattccc gcgagcttgg
     1561 cctgtgtgcg ccgtcgcccc aaggagggcc cgcgtggacg ggtcgcacta aagcgtgtgt
     1621 gcgtcttatt caacagcccc gttattttta gttggagaga actgtcccac gagaacataa
     1681 tccggtccct taccctgctg acattcccag ggctgagatg taagccgcgt ctccgcagcg
     1741 ccatctcgtg gtgagcgcgg agcatcggcc tggcttgcgg ctgggggagg cggaggggtc
     1801 ttctcaccag ggaagctcat ccggtgaaga gttttggttc cgttttgtgt ttctctgttg
     1861 acacattaag agaggtgtta gtaatcagat ttgtctagat tttagagctg tttttaacta
     1921 agtttcaaac aggtgccccg ccagacccta cctaaccccc tggttggtgt ctctctgtag
     1981 gtttcgccag accctacccc ctggttggtg tgtctctagg tttcaagtcg gggcattggt
     2041 cactctccct gcgagctgtg ggtggacctg gccccttgga gtgcccggct gcagggcccc
     2101 ctcctcacct cccggtgacg agcccgggca ccacctttac cgtgtggggc cccggtggaa
     2161 tctacacgcc gacccgcaat tttactgacg aatacgtact gacatcttat tcttgccatg
     2221 agtgggcaat taaaatgaaa atctcgtatt tactgaaagt gcccttgaac tgtttttgaa
     2281 aaacacattt gttggtcgtg agaatcacgt gtaccttgtg cttggtctgt aacttggccc
     2341 ctcagaaggg tgtgtgctga tttctggtac tgtgacttga ctgtacgtag gtcaggagat
     2401 gtgatacctg cttgtgtcat tttgagaagt gtttcaatcc tagaaacatc cagcaaaccg
     2461 tgtccctgct gagacttctc tctccctcgc tgaagacccc gggcacctgc cacccactct
     2521 cccgtccgca agcggtggtg gtggtggggg ggagctggct gtgtttccag ccggtcagaa
     2581 ctttaataaa gtaaccgatg t
//
LOCUS       XM_032618167            2356 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X3, mRNA.
ACCESSION   XM_032618167
VERSION     XM_032618167.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2356
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             171..1406
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X1"
                     /protein_id="XP_032474058.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKEFWVLHFRLQVDFCV
                     RCEIRVQFHSFAGRLCGLAALEAEPVADGPPVPLPHGPHLPHVVGVPGPLGQPGPQPL
                     PAALGALRGWAGPPHGPHQPLLDPQEDAAAAQPCGLELRARPPQRAGAAEEDEVAASA
                     PTVPAAPTPGRVSTDFHVAPSTTPERASGTESRRGDITARCAHSRELGLCAPSPQGGP
                     AWTGRTKACVRLIQQPRYF"
     misc_feature    426..>779
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
     misc_feature    <897..1397
                     /gene="CLN8"
                     /note="EBNA-3B; Provisional; Region: PHA03378"
                     /db_xref="CDD:223065"
ORIGIN      
        1 cggggtctcc gggtcccgtc ggcgtgttct cgtggagttg agagccccca gtcctggcgc
       61 ggaggagccc cgagttcccc gcgtgcggcc cgcggggctt ggcggccctg cctggactgt
      121 gggtggtggg gcggggtcca cctctccgtc ctcaggtgga ggatgggcgc atgagggtcc
      181 cggggccgtg gcctggtgca gcgtgtggac cccggcccag cctgtacgac gtcggcagca
      241 tgagcctccc gagcagcggg ccggcgggca gcgtctttga cctggactgc acctccgggc
      301 aggtccgctg ggcgctggtg gctgccggct gcaccttcta cctgggcgtc ttcgtggcct
      361 gccaccagct gtcatcctcc ctgaacgcca cctaccgctc cctgggggcc cgagagcagg
      421 tcttctggaa cctggcggcc acgcgcgcag tctttggcct ccagggcacc gcggcggggc
      481 tacgggcgct gctgctggac cccgtgctgc aggccgacaa agtgcttggc cagcagaact
      541 ggtgctggtt ccacatcacc acggcaaccg gattcttcct ctttgagaac ctcgcgctcc
      601 atgtgtccaa tgcgctgttc cacacattcg acgggttcct ggccgtccac cacctcttcg
      661 ccttcctcgg gtttctcggc tccgtggtca acctccaagc gggccactac ctgcccatga
      721 tcacgctgct cctggagatg agcacgccct tcacctgcat ctcctggatg ctcctaaagg
      781 agttttgggt cttacatttc cgccttcaag ttgatttttg tgtaaggtgt gagataaggg
      841 ttcagtttca ttcttttgca ggccggctgt gcggactcgc tgctctggag gctgaaccag
      901 tggctgatgg tccacctgtt ccactgccgc atggtcctca cctaccacat gtggtgggtg
      961 tgcctgggcc actgggacag cctggcccgc agcctcttcc cgccgcactg ggcgctcttc
     1021 gtggttgggc tgggcctcct cacggtcctc atcaacccct actggacccg caagaagacg
     1081 cagcagctgc tcaaccctgt ggactggaac ttcgcgcccg gccgccccaa cgggccggcg
     1141 ccgccgaaga agacgaggta gcggcctcgg ccccgactgt ccccgcggcg ccgaccccag
     1201 gccgcgtgag tactgacttc cacgtggcac cgagtactac acctgagcgc gcctcgggga
     1261 cagagtcccg ccgtggtgac atcacggctc gatgtgctca ttcccgcgag cttggcctgt
     1321 gtgcgccgtc gccccaagga gggcccgcgt ggacgggtcg cactaaagcg tgtgtgcgtc
     1381 ttattcaaca gccccgttat ttttagttgg agagaactgt cccacgagaa cataatccgg
     1441 tcccttaccc tgctgacatt cccagggctg agatgtaagc cgcgtctccg cagcgccatc
     1501 tcgtggtgag cgcggagcat cggcctggct tgcggctggg ggaggcggag gggtcttctc
     1561 accagggaag ctcatccggt gaagagtttt ggttccgttt tgtgtttctc tgttgacaca
     1621 ttaagagagg tgttagtaat cagatttgtc tagattttag agctgttttt aactaagttt
     1681 caaacaggtg ccccgccaga ccctacctaa ccccctggtt ggtgtctctc tgtaggtttc
     1741 gccagaccct accccctggt tggtgtgtct ctaggtttca agtcggggca ttggtcactc
     1801 tccctgcgag ctgtgggtgg acctggcccc ttggagtgcc cggctgcagg gccccctcct
     1861 cacctcccgg tgacgagccc gggcaccacc tttaccgtgt ggggccccgg tggaatctac
     1921 acgccgaccc gcaattttac tgacgaatac gtactgacat cttattcttg ccatgagtgg
     1981 gcaattaaaa tgaaaatctc gtatttactg aaagtgccct tgaactgttt ttgaaaaaca
     2041 catttgttgg tcgtgagaat cacgtgtacc ttgtgcttgg tctgtaactt ggcccctcag
     2101 aagggtgtgt gctgatttct ggtactgtga cttgactgta cgtaggtcag gagatgtgat
     2161 acctgcttgt gtcattttga gaagtgtttc aatcctagaa acatccagca aaccgtgtcc
     2221 ctgctgagac ttctctctcc ctcgctgaag accccgggca cctgccaccc actctcccgt
     2281 ccgcaagcgg tggtggtggt gggggggagc tggctgtgtt tccagccggt cagaacttta
     2341 ataaagtaac cgatgt
//
LOCUS       XM_032618168            4494 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X4, mRNA.
ACCESSION   XM_032618168
VERSION     XM_032618168.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4494
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4494
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             2333..3433
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X2"
                     /protein_id="XP_032474059.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKEFWVLHFRLQVDFCV
                     RCEIRVQFHSFAGRLCGLAALEAEPVADGPPVPLPHGPHLPHVVGVPGPLGQPGPQPL
                     PAALGALRGWAGPPHGPHQPLLDPQEDAAAAQPCGLELRARPPQRAGAAEEDEVAASA
                     PTVPAAPTPGRNPNACPFFQHCSHCCGGFLSR"
     misc_feature    2588..>2941
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
     misc_feature    <3044..>3397
                     /gene="CLN8"
                     /note="DNA translocase FtsK; Provisional; Region:
                     PRK10263"
                     /db_xref="CDD:236669"
ORIGIN      
        1 cgggcgtggg ctcaggccgc ggttcgggcc gcggtgggag gggtgcagcc ggccggcccg
       61 cgggcagcga gcccgagaga ggacactggc agacgggccg agaccgtcca cggcgtgctc
      121 tctgtgggac ttgtttatat tttctgaatt ttgtttgttg agcgtgtatt ttaattttgg
      181 aaaaatatgt ttacaaactg tcgcagtata attctcaaaa tgttagaaac gtaattcctg
      241 agcaaacagg gagcacaggt caggttaaat cgcctaggaa ggacccggcg gaggaaagcc
      301 cgccagaggc tgccaccagg aatgctggtc ggggagggag ccactgggat tatcccctgg
      361 ggggagaggg gcgttacggt gcctcatcac cctatcagtg ttgctgggtt gacctcacag
      421 actgaagtct gggccggctg agacgcaggg gctgcggggc gggtctccga ggaccccgga
      481 ctggaggagc gggggtcctg gctctgcggc tgtgcgggga cggggacggg gacggggacg
      541 gggacggcgg cctcaggaga cacgaagaag ccctagggct gggctcgggg tgaacggggt
      601 gacccagtgc ccccgtgccg ggatgggtga ggggtgtggt cagggtgggt ggctgccgag
      661 ccctggagct ctgcctgcct ctggtctgtg ccgccttccg gagcagggcc tggccacgcc
      721 ctggggtgcc ccctagccac ggggcagccg ggccaccgca gggctccggg ggggccgcct
      781 gggttgctgc ggacccccac ccaaggcctg gcctcatccc atcatggctc aagtgggtca
      841 cccacctcac ctgtgtgtcc ccgggaccca gggcaacagg ttggaccaga ccagccggcc
      901 cagaagctct gtggaagcgg ctgtgtagga gggtgtgtcc gaggcgggtt tgagcagcga
      961 tccagatggg ggagagttga tagggattga agggcggcga gcattgggtt tttacaggaa
     1021 gttgtttctg tttctgtgat ggccccgagc gttccgccgc cactgatcgg tctcagctga
     1081 gtatttcagc gtctgacctt agcccgcctg catttctttc tgtagaaagg ttactagaag
     1141 gcttgaggac ccagaagccg ggctgaggtt tctcggtggt gaatttgaga tgacggtggt
     1201 ttttcctggg tctctggggc cttggagcct tcctcttcct tgggccttgg ctctgcgccc
     1261 cggcctccac cctggctggg cccacgcttc agaagcaggc ttctcccgcg tgctcggagc
     1321 ctgaggctgg cgggtggctc tttgtgctgt agcctcgctt gtccactctc cgttccctct
     1381 caggccctgc cccggccctc aggaccccac gtctgtctcc ttgtgcctct tggtgggagg
     1441 aggaaaaggg ctgtttcagg ccttctctcc aggataagca gggtttgttg gattggctta
     1501 catttaaaac cacctgcggc gcacagaaga gcctctcagg tcttcaggac actgcctgct
     1561 ttaggaaaag gaagccacta aaccctccct ccttggagtc acaggatctt acatctgggg
     1621 ggactggaat tcatgccggt tcagtggttc tgcacttgct tagagcgcct gggcacataa
     1681 gaaacaccca agcctggccc cgccccaggg cagcgaagtc aggaccttgg gagagggcct
     1741 gggcatcgtc ctcggtgtgg gaaggacaga cgaacctgca ggtgatctaa tgcacctggg
     1801 cccagagctc tgagtcctga tcatggtgca atccgaggcc ccactgggta gcttcttgat
     1861 ttgaggcaaa taactaaacc tgagctctct tctttccatt ggaaatgtac gactccctgt
     1921 ttagcaggtt aaacggccta actgaacgtg cctggcacgg agtaggtact tcatattagc
     1981 acccggcacc cactctgctg tatttatgtg tatttttcgt tcctgtagtc agacactgga
     2041 gtcctgtttt ccttgctccg aaatagtgga accaagatca gaacccactg ttttgttctt
     2101 tggtcccagt gccctggagt ccccccagcc ttcgtgaagg ggcacctata ccaaccactc
     2161 gccctgggca agcttgagtc attgttttag tcagagctct tcagagtctt ggggaccctc
     2221 ccgtttcaag gcagaggttc cacaggagcg tagagatgca gtcgtggcaa aatgggaagt
     2281 cgcccagacc gcgtgacagg ctcgtggaaa ggacaaggtg gaggatgggc gcatgagggt
     2341 cccggggccg tggcctggtg cagcgtgtgg accccggccc agcctgtacg acgtcggcag
     2401 catgagcctc ccgagcagcg ggccggcggg cagcgtcttt gacctggact gcacctccgg
     2461 gcaggtccgc tgggcgctgg tggctgccgg ctgcaccttc tacctgggcg tcttcgtggc
     2521 ctgccaccag ctgtcatcct ccctgaacgc cacctaccgc tccctggggg cccgagagca
     2581 ggtcttctgg aacctggcgg ccacgcgcgc agtctttggc ctccagggca ccgcggcggg
     2641 gctacgggcg ctgctgctgg accccgtgct gcaggccgac aaagtgcttg gccagcagaa
     2701 ctggtgctgg ttccacatca ccacggcaac cggattcttc ctctttgaga acctcgcgct
     2761 ccatgtgtcc aatgcgctgt tccacacatt cgacgggttc ctggccgtcc accacctctt
     2821 cgccttcctc gggtttctcg gctccgtggt caacctccaa gcgggccact acctgcccat
     2881 gatcacgctg ctcctggaga tgagcacgcc cttcacctgc atctcctgga tgctcctaaa
     2941 ggagttttgg gtcttacatt tccgccttca agttgatttt tgtgtaaggt gtgagataag
     3001 ggttcagttt cattcttttg caggccggct gtgcggactc gctgctctgg aggctgaacc
     3061 agtggctgat ggtccacctg ttccactgcc gcatggtcct cacctaccac atgtggtggg
     3121 tgtgcctggg ccactgggac agcctggccc gcagcctctt cccgccgcac tgggcgctct
     3181 tcgtggttgg gctgggcctc ctcacggtcc tcatcaaccc ctactggacc cgcaagaaga
     3241 cgcagcagct gctcaaccct gtggactgga acttcgcgcc cggccgcccc aacgggccgg
     3301 cgccgccgaa gaagacgagg tagcggcctc ggccccgact gtccccgcgg cgccgacccc
     3361 aggccgcaac ccgaatgcat gtccgttctt tcaacactgt tcacattgct gtggaggttt
     3421 tctgtctcgg tgatacaact gtgatgataa atctgcacgt gctcaaggtt tgaactcagc
     3481 ttaaggtata aaatacttaa tttttacgtg accctcactg ggaatttgac tttccccggg
     3541 ctcagtctct acatccttca tctcagtgaa ggtgcttttg cctccatccc gacccgactt
     3601 cccgtgagga ccgcagaggc aggggcgttt ggtcagaaag ggccttttga ggcttgtgat
     3661 ccagcatcca ggcaccttcg ctgcccagac aggtgctgcc ttccgggctg tgggtgcttt
     3721 gcgggctccg cccagcccgt gcacgaacgg gatgaggcca tagagagaga tgtcgggggg
     3781 tgtgcagggg ggtgtcggcc cctggccctc ctcagacccc gtctttctga tcgctgcggc
     3841 tccgccagct gtccctgctg cggaccgctg ggttttccca ggcgccgcgc tggccaccga
     3901 gggctcctcg gttcctggca cgaacagctc taggaagtag gcaccgtcga tcccatttag
     3961 agctggggcc tggggctacg aggtggcgca ggcggtcagc ggccacgccc tgactttaaa
     4021 gccgaggccc gtagactgcg tctacgagca cagaaagcaa gcggcaggcc ccggctgacc
     4081 ctggccacca gacccagctg catccgcgta cgcagagcac tggagcactg cggtgtctgt
     4141 ccaggtaccg cagccccgcg ggacagatgc ccggccgctg gtgagcgagg ccgcggcggc
     4201 gtcagcgggc aggtacgggg gtccaccggg aagggcagtt agaaagttag gaagtgggag
     4261 cggcggcccg gctctggcac ctggaaggcc ggggccgcgg gcgactctcc cggggcaggg
     4321 ctggggtctc tgggttgggc gagaggctgg gcgcccctgg ggggccatgc agccttgtct
     4381 gcagcacccg tgtctgcgtc agggccggtc aggtgatggg gtgatgggct ggaatggctg
     4441 tcacgtactt cagagtgttg aaagcagcaa agcagggcac ctgtctcctc tccc
//
LOCUS       XM_032618169            3988 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X5, mRNA.
ACCESSION   XM_032618169
VERSION     XM_032618169.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3988
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3988
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             2333..3406
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X3"
                     /protein_id="XP_032474060.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKEFWVLHFRLQVDFCV
                     RCEIRVQFHSFAGRLCGLAALEAEPVADGPPVPLPHGPHLPHVVGVPGPLGQPGPQPL
                     PAALGALRGWAGPPHGPHQPLLDPQEDAAAAQPCGLELRARPPQRAGAAEEDEVAASA
                     PTVPAAPTPGRVSPDPTPWLVCL"
     misc_feature    2588..>2941
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
     misc_feature    <3026..>3388
                     /gene="CLN8"
                     /note="EBNA-3B; Provisional; Region: PHA03378"
                     /db_xref="CDD:223065"
ORIGIN      
        1 cgggcgtggg ctcaggccgc ggttcgggcc gcggtgggag gggtgcagcc ggccggcccg
       61 cgggcagcga gcccgagaga ggacactggc agacgggccg agaccgtcca cggcgtgctc
      121 tctgtgggac ttgtttatat tttctgaatt ttgtttgttg agcgtgtatt ttaattttgg
      181 aaaaatatgt ttacaaactg tcgcagtata attctcaaaa tgttagaaac gtaattcctg
      241 agcaaacagg gagcacaggt caggttaaat cgcctaggaa ggacccggcg gaggaaagcc
      301 cgccagaggc tgccaccagg aatgctggtc ggggagggag ccactgggat tatcccctgg
      361 ggggagaggg gcgttacggt gcctcatcac cctatcagtg ttgctgggtt gacctcacag
      421 actgaagtct gggccggctg agacgcaggg gctgcggggc gggtctccga ggaccccgga
      481 ctggaggagc gggggtcctg gctctgcggc tgtgcgggga cggggacggg gacggggacg
      541 gggacggcgg cctcaggaga cacgaagaag ccctagggct gggctcgggg tgaacggggt
      601 gacccagtgc ccccgtgccg ggatgggtga ggggtgtggt cagggtgggt ggctgccgag
      661 ccctggagct ctgcctgcct ctggtctgtg ccgccttccg gagcagggcc tggccacgcc
      721 ctggggtgcc ccctagccac ggggcagccg ggccaccgca gggctccggg ggggccgcct
      781 gggttgctgc ggacccccac ccaaggcctg gcctcatccc atcatggctc aagtgggtca
      841 cccacctcac ctgtgtgtcc ccgggaccca gggcaacagg ttggaccaga ccagccggcc
      901 cagaagctct gtggaagcgg ctgtgtagga gggtgtgtcc gaggcgggtt tgagcagcga
      961 tccagatggg ggagagttga tagggattga agggcggcga gcattgggtt tttacaggaa
     1021 gttgtttctg tttctgtgat ggccccgagc gttccgccgc cactgatcgg tctcagctga
     1081 gtatttcagc gtctgacctt agcccgcctg catttctttc tgtagaaagg ttactagaag
     1141 gcttgaggac ccagaagccg ggctgaggtt tctcggtggt gaatttgaga tgacggtggt
     1201 ttttcctggg tctctggggc cttggagcct tcctcttcct tgggccttgg ctctgcgccc
     1261 cggcctccac cctggctggg cccacgcttc agaagcaggc ttctcccgcg tgctcggagc
     1321 ctgaggctgg cgggtggctc tttgtgctgt agcctcgctt gtccactctc cgttccctct
     1381 caggccctgc cccggccctc aggaccccac gtctgtctcc ttgtgcctct tggtgggagg
     1441 aggaaaaggg ctgtttcagg ccttctctcc aggataagca gggtttgttg gattggctta
     1501 catttaaaac cacctgcggc gcacagaaga gcctctcagg tcttcaggac actgcctgct
     1561 ttaggaaaag gaagccacta aaccctccct ccttggagtc acaggatctt acatctgggg
     1621 ggactggaat tcatgccggt tcagtggttc tgcacttgct tagagcgcct gggcacataa
     1681 gaaacaccca agcctggccc cgccccaggg cagcgaagtc aggaccttgg gagagggcct
     1741 gggcatcgtc ctcggtgtgg gaaggacaga cgaacctgca ggtgatctaa tgcacctggg
     1801 cccagagctc tgagtcctga tcatggtgca atccgaggcc ccactgggta gcttcttgat
     1861 ttgaggcaaa taactaaacc tgagctctct tctttccatt ggaaatgtac gactccctgt
     1921 ttagcaggtt aaacggccta actgaacgtg cctggcacgg agtaggtact tcatattagc
     1981 acccggcacc cactctgctg tatttatgtg tatttttcgt tcctgtagtc agacactgga
     2041 gtcctgtttt ccttgctccg aaatagtgga accaagatca gaacccactg ttttgttctt
     2101 tggtcccagt gccctggagt ccccccagcc ttcgtgaagg ggcacctata ccaaccactc
     2161 gccctgggca agcttgagtc attgttttag tcagagctct tcagagtctt ggggaccctc
     2221 ccgtttcaag gcagaggttc cacaggagcg tagagatgca gtcgtggcaa aatgggaagt
     2281 cgcccagacc gcgtgacagg ctcgtggaaa ggacaaggtg gaggatgggc gcatgagggt
     2341 cccggggccg tggcctggtg cagcgtgtgg accccggccc agcctgtacg acgtcggcag
     2401 catgagcctc ccgagcagcg ggccggcggg cagcgtcttt gacctggact gcacctccgg
     2461 gcaggtccgc tgggcgctgg tggctgccgg ctgcaccttc tacctgggcg tcttcgtggc
     2521 ctgccaccag ctgtcatcct ccctgaacgc cacctaccgc tccctggggg cccgagagca
     2581 ggtcttctgg aacctggcgg ccacgcgcgc agtctttggc ctccagggca ccgcggcggg
     2641 gctacgggcg ctgctgctgg accccgtgct gcaggccgac aaagtgcttg gccagcagaa
     2701 ctggtgctgg ttccacatca ccacggcaac cggattcttc ctctttgaga acctcgcgct
     2761 ccatgtgtcc aatgcgctgt tccacacatt cgacgggttc ctggccgtcc accacctctt
     2821 cgccttcctc gggtttctcg gctccgtggt caacctccaa gcgggccact acctgcccat
     2881 gatcacgctg ctcctggaga tgagcacgcc cttcacctgc atctcctgga tgctcctaaa
     2941 ggagttttgg gtcttacatt tccgccttca agttgatttt tgtgtaaggt gtgagataag
     3001 ggttcagttt cattcttttg caggccggct gtgcggactc gctgctctgg aggctgaacc
     3061 agtggctgat ggtccacctg ttccactgcc gcatggtcct cacctaccac atgtggtggg
     3121 tgtgcctggg ccactgggac agcctggccc gcagcctctt cccgccgcac tgggcgctct
     3181 tcgtggttgg gctgggcctc ctcacggtcc tcatcaaccc ctactggacc cgcaagaaga
     3241 cgcagcagct gctcaaccct gtggactgga acttcgcgcc cggccgcccc aacgggccgg
     3301 cgccgccgaa gaagacgagg tagcggcctc ggccccgact gtccccgcgg cgccgacccc
     3361 aggccgcgtt tcgccagacc ctaccccctg gttggtgtgt ctctaggttt caagtcgggg
     3421 cattggtcac tctccctgcg agctgtgggt ggacctggcc ccttggagtg cccggctgca
     3481 gggccccctc ctcacctccc ggtgacgagc ccgggcacca cctttaccgt gtggggcccc
     3541 ggtggaatct acacgccgac ccgcaatttt actgacgaat acgtactgac atcttattct
     3601 tgccatgagt gggcaattaa aatgaaaatc tcgtatttac tgaaagtgcc cttgaactgt
     3661 ttttgaaaaa cacatttgtt ggtcgtgaga atcacgtgta ccttgtgctt ggtctgtaac
     3721 ttggcccctc agaagggtgt gtgctgattt ctggtactgt gacttgactg tacgtaggtc
     3781 aggagatgtg atacctgctt gtgtcatttt gagaagtgtt tcaatcctag aaacatccag
     3841 caaaccgtgt ccctgctgag acttctctct ccctcgctga agaccccggg cacctgccac
     3901 ccactctccc gtccgcaagc ggtggtggtg gtggggggga gctggctgtg tttccagccg
     3961 gtcagaactt taataaagta accgatgt
//
LOCUS       XM_032618170            4448 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X6, mRNA.
ACCESSION   XM_032618170
VERSION     XM_032618170.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4448
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4448
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 long SRA reads, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             2333..3241
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X4"
                     /protein_id="XP_032474061.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKAGCADSLLWRLNQWL
                     MVHLFHCRMVLTYHMWWVCLGHWDSLARSLFPPHWALFVVGLGLLTVLINPYWTRKKT
                     QQLLNPVDWNFAPGRPNGPAPPKKTR"
     misc_feature    2588..3184
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 cgggcgtggg ctcaggccgc ggttcgggcc gcggtgggag gggtgcagcc ggccggcccg
       61 cgggcagcga gcccgagaga ggacactggc agacgggccg agaccgtcca cggcgtgctc
      121 tctgtgggac ttgtttatat tttctgaatt ttgtttgttg agcgtgtatt ttaattttgg
      181 aaaaatatgt ttacaaactg tcgcagtata attctcaaaa tgttagaaac gtaattcctg
      241 agcaaacagg gagcacaggt caggttaaat cgcctaggaa ggacccggcg gaggaaagcc
      301 cgccagaggc tgccaccagg aatgctggtc ggggagggag ccactgggat tatcccctgg
      361 ggggagaggg gcgttacggt gcctcatcac cctatcagtg ttgctgggtt gacctcacag
      421 actgaagtct gggccggctg agacgcaggg gctgcggggc gggtctccga ggaccccgga
      481 ctggaggagc gggggtcctg gctctgcggc tgtgcgggga cggggacggg gacggggacg
      541 gggacggcgg cctcaggaga cacgaagaag ccctagggct gggctcgggg tgaacggggt
      601 gacccagtgc ccccgtgccg ggatgggtga ggggtgtggt cagggtgggt ggctgccgag
      661 ccctggagct ctgcctgcct ctggtctgtg ccgccttccg gagcagggcc tggccacgcc
      721 ctggggtgcc ccctagccac ggggcagccg ggccaccgca gggctccggg ggggccgcct
      781 gggttgctgc ggacccccac ccaaggcctg gcctcatccc atcatggctc aagtgggtca
      841 cccacctcac ctgtgtgtcc ccgggaccca gggcaacagg ttggaccaga ccagccggcc
      901 cagaagctct gtggaagcgg ctgtgtagga gggtgtgtcc gaggcgggtt tgagcagcga
      961 tccagatggg ggagagttga tagggattga agggcggcga gcattgggtt tttacaggaa
     1021 gttgtttctg tttctgtgat ggccccgagc gttccgccgc cactgatcgg tctcagctga
     1081 gtatttcagc gtctgacctt agcccgcctg catttctttc tgtagaaagg ttactagaag
     1141 gcttgaggac ccagaagccg ggctgaggtt tctcggtggt gaatttgaga tgacggtggt
     1201 ttttcctggg tctctggggc cttggagcct tcctcttcct tgggccttgg ctctgcgccc
     1261 cggcctccac cctggctggg cccacgcttc agaagcaggc ttctcccgcg tgctcggagc
     1321 ctgaggctgg cgggtggctc tttgtgctgt agcctcgctt gtccactctc cgttccctct
     1381 caggccctgc cccggccctc aggaccccac gtctgtctcc ttgtgcctct tggtgggagg
     1441 aggaaaaggg ctgtttcagg ccttctctcc aggataagca gggtttgttg gattggctta
     1501 catttaaaac cacctgcggc gcacagaaga gcctctcagg tcttcaggac actgcctgct
     1561 ttaggaaaag gaagccacta aaccctccct ccttggagtc acaggatctt acatctgggg
     1621 ggactggaat tcatgccggt tcagtggttc tgcacttgct tagagcgcct gggcacataa
     1681 gaaacaccca agcctggccc cgccccaggg cagcgaagtc aggaccttgg gagagggcct
     1741 gggcatcgtc ctcggtgtgg gaaggacaga cgaacctgca ggtgatctaa tgcacctggg
     1801 cccagagctc tgagtcctga tcatggtgca atccgaggcc ccactgggta gcttcttgat
     1861 ttgaggcaaa taactaaacc tgagctctct tctttccatt ggaaatgtac gactccctgt
     1921 ttagcaggtt aaacggccta actgaacgtg cctggcacgg agtaggtact tcatattagc
     1981 acccggcacc cactctgctg tatttatgtg tatttttcgt tcctgtagtc agacactgga
     2041 gtcctgtttt ccttgctccg aaatagtgga accaagatca gaacccactg ttttgttctt
     2101 tggtcccagt gccctggagt ccccccagcc ttcgtgaagg ggcacctata ccaaccactc
     2161 gccctgggca agcttgagtc attgttttag tcagagctct tcagagtctt ggggaccctc
     2221 ccgtttcaag gcagaggttc cacaggagcg tagagatgca gtcgtggcaa aatgggaagt
     2281 cgcccagacc gcgtgacagg ctcgtggaaa ggacaaggtg gaggatgggc gcatgagggt
     2341 cccggggccg tggcctggtg cagcgtgtgg accccggccc agcctgtacg acgtcggcag
     2401 catgagcctc ccgagcagcg ggccggcggg cagcgtcttt gacctggact gcacctccgg
     2461 gcaggtccgc tgggcgctgg tggctgccgg ctgcaccttc tacctgggcg tcttcgtggc
     2521 ctgccaccag ctgtcatcct ccctgaacgc cacctaccgc tccctggggg cccgagagca
     2581 ggtcttctgg aacctggcgg ccacgcgcgc agtctttggc ctccagggca ccgcggcggg
     2641 gctacgggcg ctgctgctgg accccgtgct gcaggccgac aaagtgcttg gccagcagaa
     2701 ctggtgctgg ttccacatca ccacggcaac cggattcttc ctctttgaga acctcgcgct
     2761 ccatgtgtcc aatgcgctgt tccacacatt cgacgggttc ctggccgtcc accacctctt
     2821 cgccttcctc gggtttctcg gctccgtggt caacctccaa gcgggccact acctgcccat
     2881 gatcacgctg ctcctggaga tgagcacgcc cttcacctgc atctcctgga tgctcctaaa
     2941 ggccggctgt gcggactcgc tgctctggag gctgaaccag tggctgatgg tccacctgtt
     3001 ccactgccgc atggtcctca cctaccacat gtggtgggtg tgcctgggcc actgggacag
     3061 cctggcccgc agcctcttcc cgccgcactg ggcgctcttc gtggttgggc tgggcctcct
     3121 cacggtcctc atcaacccct actggacccg caagaagacg cagcagctgc tcaaccctgt
     3181 ggactggaac ttcgcgcccg gccgccccaa cgggccggcg ccgccgaaga agacgaggta
     3241 gcggcctcgg ccccgactgt ccccgcggcg ccgaccccag gccgcgtgag tactgacttc
     3301 cacgtggcac cgagtactac acctgagcgc gcctcgggga cagagtcccg ccgtggtgac
     3361 atcacggctc gatgtgctca ttcccgcgag cttggcctgt gtgcgccgtc gccccaagga
     3421 gggcccgcgt ggacgggtcg cactaaagcg tgtgtgcgtc ttattcaaca gccccgttat
     3481 ttttagttgg agagaactgt cccacgagaa cataatccgg tcccttaccc tgctgacatt
     3541 cccagggctg agatgtaagc cgcgtctccg cagcgccatc tcgtggtgag cgcggagcat
     3601 cggcctggct tgcggctggg ggaggcggag gggtcttctc accagggaag ctcatccggt
     3661 gaagagtttt ggttccgttt tgtgtttctc tgttgacaca ttaagagagg tgttagtaat
     3721 cagatttgtc tagattttag agctgttttt aactaagttt caaacaggtg ccccgccaga
     3781 ccctacctaa ccccctggtt ggtgtctctc tgtaggtttc gccagaccct accccctggt
     3841 tggtgtgtct ctaggtttca agtcggggca ttggtcactc tccctgcgag ctgtgggtgg
     3901 acctggcccc ttggagtgcc cggctgcagg gccccctcct cacctcccgg tgacgagccc
     3961 gggcaccacc tttaccgtgt ggggccccgg tggaatctac acgccgaccc gcaattttac
     4021 tgacgaatac gtactgacat cttattcttg ccatgagtgg gcaattaaaa tgaaaatctc
     4081 gtatttactg aaagtgccct tgaactgttt ttgaaaaaca catttgttgg tcgtgagaat
     4141 cacgtgtacc ttgtgcttgg tctgtaactt ggcccctcag aagggtgtgt gctgatttct
     4201 ggtactgtga cttgactgta cgtaggtcag gagatgtgat acctgcttgt gtcattttga
     4261 gaagtgtttc aatcctagaa acatccagca aaccgtgtcc ctgctgagac ttctctctcc
     4321 ctcgctgaag accccgggca cctgccaccc actctcccgt ccgcaagcgg tggtggtggt
     4381 gggggggagc tggctgtgtt tccagccggt cagaacttta ataaagtaac cgatgtttac
     4441 agaacccg
//
LOCUS       XM_032618171            2323 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X7, mRNA.
ACCESSION   XM_032618171
VERSION     XM_032618171.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2323
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 long SRA reads, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             208..1116
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X4"
                     /protein_id="XP_032474062.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKAGCADSLLWRLNQWL
                     MVHLFHCRMVLTYHMWWVCLGHWDSLARSLFPPHWALFVVGLGLLTVLINPYWTRKKT
                     QQLLNPVDWNFAPGRPNGPAPPKKTR"
     misc_feature    463..1059
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 cggggtctcc gggtcccgtc ggcgtgttct cgtggagttg agagccccca gtcctggcgc
       61 ggaggagccc cgagttcccc gcgtgcggcc cgcggggctt ggcggccctg cctggactgt
      121 gggtggtggg gcggggtcca cctctccgtc ctcaggtgtg cagggcagag gctcaggtcg
      181 ccccatctgc aggtggagga tgggcgcatg agggtcccgg ggccgtggcc tggtgcagcg
      241 tgtggacccc ggcccagcct gtacgacgtc ggcagcatga gcctcccgag cagcgggccg
      301 gcgggcagcg tctttgacct ggactgcacc tccgggcagg tccgctgggc gctggtggct
      361 gccggctgca ccttctacct gggcgtcttc gtggcctgcc accagctgtc atcctccctg
      421 aacgccacct accgctccct gggggcccga gagcaggtct tctggaacct ggcggccacg
      481 cgcgcagtct ttggcctcca gggcaccgcg gcggggctac gggcgctgct gctggacccc
      541 gtgctgcagg ccgacaaagt gcttggccag cagaactggt gctggttcca catcaccacg
      601 gcaaccggat tcttcctctt tgagaacctc gcgctccatg tgtccaatgc gctgttccac
      661 acattcgacg ggttcctggc cgtccaccac ctcttcgcct tcctcgggtt tctcggctcc
      721 gtggtcaacc tccaagcggg ccactacctg cccatgatca cgctgctcct ggagatgagc
      781 acgcccttca cctgcatctc ctggatgctc ctaaaggccg gctgtgcgga ctcgctgctc
      841 tggaggctga accagtggct gatggtccac ctgttccact gccgcatggt cctcacctac
      901 cacatgtggt gggtgtgcct gggccactgg gacagcctgg cccgcagcct cttcccgccg
      961 cactgggcgc tcttcgtggt tgggctgggc ctcctcacgg tcctcatcaa cccctactgg
     1021 acccgcaaga agacgcagca gctgctcaac cctgtggact ggaacttcgc gcccggccgc
     1081 cccaacgggc cggcgccgcc gaagaagacg aggtagcggc ctcggccccg actgtccccg
     1141 cggcgccgac cccaggccgc gtgagtactg acttccacgt ggcaccgagt actacacctg
     1201 agcgcgcctc ggggacagag tcccgccgtg gtgacatcac ggctcgatgt gctcattccc
     1261 gcgagcttgg cctgtgtgcg ccgtcgcccc aaggagggcc cgcgtggacg ggtcgcacta
     1321 aagcgtgtgt gcgtcttatt caacagcccc gttattttta gttggagaga actgtcccac
     1381 gagaacataa tccggtccct taccctgctg acattcccag ggctgagatg taagccgcgt
     1441 ctccgcagcg ccatctcgtg gtgagcgcgg agcatcggcc tggcttgcgg ctgggggagg
     1501 cggaggggtc ttctcaccag ggaagctcat ccggtgaaga gttttggttc cgttttgtgt
     1561 ttctctgttg acacattaag agaggtgtta gtaatcagat ttgtctagat tttagagctg
     1621 tttttaacta agtttcaaac aggtgccccg ccagacccta cctaaccccc tggttggtgt
     1681 ctctctgtag gtttcgccag accctacccc ctggttggtg tgtctctagg tttcaagtcg
     1741 gggcattggt cactctccct gcgagctgtg ggtggacctg gccccttgga gtgcccggct
     1801 gcagggcccc ctcctcacct cccggtgacg agcccgggca ccacctttac cgtgtggggc
     1861 cccggtggaa tctacacgcc gacccgcaat tttactgacg aatacgtact gacatcttat
     1921 tcttgccatg agtgggcaat taaaatgaaa atctcgtatt tactgaaagt gcccttgaac
     1981 tgtttttgaa aaacacattt gttggtcgtg agaatcacgt gtaccttgtg cttggtctgt
     2041 aacttggccc ctcagaaggg tgtgtgctga tttctggtac tgtgacttga ctgtacgtag
     2101 gtcaggagat gtgatacctg cttgtgtcat tttgagaagt gtttcaatcc tagaaacatc
     2161 cagcaaaccg tgtccctgct gagacttctc tctccctcgc tgaagacccc gggcacctgc
     2221 cacccactct cccgtccgca agcggtggtg gtggtggggg ggagctggct gtgtttccag
     2281 ccggtcagaa ctttaataaa gtaaccgatg tttacagaac ccg
//
LOCUS       XM_032618173            2612 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X8, mRNA.
ACCESSION   XM_032618173
VERSION     XM_032618173.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2612
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 long SRA reads, 5
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746649"
     CDS             497..1405
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X4"
                     /protein_id="XP_032474064.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKAGCADSLLWRLNQWL
                     MVHLFHCRMVLTYHMWWVCLGHWDSLARSLFPPHWALFVVGLGLLTVLINPYWTRKKT
                     QQLLNPVDWNFAPGRPNGPAPPKKTR"
     misc_feature    752..1348
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 cggggtctcc gggtcccgtc ggcgtgttct cgtggagttg agagccccca gtcctggcgc
       61 ggaggagccc cgagttcccc gcgtgcggcc cgcggggctt ggcggccctg cctggactgt
      121 gggtggtggg gcggggtcca cctctccgtc ctcaggtgtg cagggcagag gctcaggtcg
      181 ccccatctgc agtcagacac tggagtcctg ttttccttgc tccgaaatag tggaaccaag
      241 atcagaaccc actgttttgt tctttggtcc cagtgccctg gagtcccccc agccttcgtg
      301 aaggggcacc tataccaacc actcgccctg ggcaagcttg agtcattgtt ttagtcagag
      361 ctcttcagag tcttggggac cctcccgttt caaggcagag gttccacagg agcgtagaga
      421 tgcagtcgtg gcaaaatggg aagtcgccca gaccgcgtga caggctcgtg gaaaggacaa
      481 ggtggaggat gggcgcatga gggtcccggg gccgtggcct ggtgcagcgt gtggaccccg
      541 gcccagcctg tacgacgtcg gcagcatgag cctcccgagc agcgggccgg cgggcagcgt
      601 ctttgacctg gactgcacct ccgggcaggt ccgctgggcg ctggtggctg ccggctgcac
      661 cttctacctg ggcgtcttcg tggcctgcca ccagctgtca tcctccctga acgccaccta
      721 ccgctccctg ggggcccgag agcaggtctt ctggaacctg gcggccacgc gcgcagtctt
      781 tggcctccag ggcaccgcgg cggggctacg ggcgctgctg ctggaccccg tgctgcaggc
      841 cgacaaagtg cttggccagc agaactggtg ctggttccac atcaccacgg caaccggatt
      901 cttcctcttt gagaacctcg cgctccatgt gtccaatgcg ctgttccaca cattcgacgg
      961 gttcctggcc gtccaccacc tcttcgcctt cctcgggttt ctcggctccg tggtcaacct
     1021 ccaagcgggc cactacctgc ccatgatcac gctgctcctg gagatgagca cgcccttcac
     1081 ctgcatctcc tggatgctcc taaaggccgg ctgtgcggac tcgctgctct ggaggctgaa
     1141 ccagtggctg atggtccacc tgttccactg ccgcatggtc ctcacctacc acatgtggtg
     1201 ggtgtgcctg ggccactggg acagcctggc ccgcagcctc ttcccgccgc actgggcgct
     1261 cttcgtggtt gggctgggcc tcctcacggt cctcatcaac ccctactgga cccgcaagaa
     1321 gacgcagcag ctgctcaacc ctgtggactg gaacttcgcg cccggccgcc ccaacgggcc
     1381 ggcgccgccg aagaagacga ggtagcggcc tcggccccga ctgtccccgc ggcgccgacc
     1441 ccaggccgcg tgagtactga cttccacgtg gcaccgagta ctacacctga gcgcgcctcg
     1501 gggacagagt cccgccgtgg tgacatcacg gctcgatgtg ctcattcccg cgagcttggc
     1561 ctgtgtgcgc cgtcgcccca aggagggccc gcgtggacgg gtcgcactaa agcgtgtgtg
     1621 cgtcttattc aacagccccg ttatttttag ttggagagaa ctgtcccacg agaacataat
     1681 ccggtccctt accctgctga cattcccagg gctgagatgt aagccgcgtc tccgcagcgc
     1741 catctcgtgg tgagcgcgga gcatcggcct ggcttgcggc tgggggaggc ggaggggtct
     1801 tctcaccagg gaagctcatc cggtgaagag ttttggttcc gttttgtgtt tctctgttga
     1861 cacattaaga gaggtgttag taatcagatt tgtctagatt ttagagctgt ttttaactaa
     1921 gtttcaaaca ggtgccccgc cagaccctac ctaaccccct ggttggtgtc tctctgtagg
     1981 tttcgccaga ccctaccccc tggttggtgt gtctctaggt ttcaagtcgg ggcattggtc
     2041 actctccctg cgagctgtgg gtggacctgg ccccttggag tgcccggctg cagggccccc
     2101 tcctcacctc ccggtgacga gcccgggcac cacctttacc gtgtggggcc ccggtggaat
     2161 ctacacgccg acccgcaatt ttactgacga atacgtactg acatcttatt cttgccatga
     2221 gtgggcaatt aaaatgaaaa tctcgtattt actgaaagtg cccttgaact gtttttgaaa
     2281 aacacatttg ttggtcgtga gaatcacgtg taccttgtgc ttggtctgta acttggcccc
     2341 tcagaagggt gtgtgctgat ttctggtact gtgacttgac tgtacgtagg tcaggagatg
     2401 tgatacctgc ttgtgtcatt ttgagaagtg tttcaatcct agaaacatcc agcaaaccgt
     2461 gtccctgctg agacttctct ctccctcgct gaagaccccg ggcacctgcc acccactctc
     2521 ccgtccgcaa gcggtggtgg tggtgggggg gagctggctg tgtttccagc cggtcagaac
     2581 tttaataaag taaccgatgt ttacagaacc cg
//
LOCUS       XM_032618174            2437 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X9, mRNA.
ACCESSION   XM_032618174
VERSION     XM_032618174.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2437
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 long SRA reads, 5
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746649"
     CDS             322..1230
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X4"
                     /protein_id="XP_032474065.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKAGCADSLLWRLNQWL
                     MVHLFHCRMVLTYHMWWVCLGHWDSLARSLFPPHWALFVVGLGLLTVLINPYWTRKKT
                     QQLLNPVDWNFAPGRPNGPAPPKKTR"
     misc_feature    577..1173
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 gacacatccg tacgcagtca gacactggag tcctgttttc cttgctccga aatagtggaa
       61 ccaagatcag aacccactgt tttgttcttt ggtcccagtg ccctggagtc cccccagcct
      121 tcgtgaaggg gcacctatac caaccactcg ccctgggcaa gcttgagtca ttgttttagt
      181 cagagctctt cagagtcttg gggaccctcc cgtttcaagg cagaggttcc acaggagcgt
      241 agagatgcag tcgtggcaaa atgggaagtc gcccagaccg cgtgacaggc tcgtggaaag
      301 gacaaggtgg aggatgggcg catgagggtc ccggggccgt ggcctggtgc agcgtgtgga
      361 ccccggccca gcctgtacga cgtcggcagc atgagcctcc cgagcagcgg gccggcgggc
      421 agcgtctttg acctggactg cacctccggg caggtccgct gggcgctggt ggctgccggc
      481 tgcaccttct acctgggcgt cttcgtggcc tgccaccagc tgtcatcctc cctgaacgcc
      541 acctaccgct ccctgggggc ccgagagcag gtcttctgga acctggcggc cacgcgcgca
      601 gtctttggcc tccagggcac cgcggcgggg ctacgggcgc tgctgctgga ccccgtgctg
      661 caggccgaca aagtgcttgg ccagcagaac tggtgctggt tccacatcac cacggcaacc
      721 ggattcttcc tctttgagaa cctcgcgctc catgtgtcca atgcgctgtt ccacacattc
      781 gacgggttcc tggccgtcca ccacctcttc gccttcctcg ggtttctcgg ctccgtggtc
      841 aacctccaag cgggccacta cctgcccatg atcacgctgc tcctggagat gagcacgccc
      901 ttcacctgca tctcctggat gctcctaaag gccggctgtg cggactcgct gctctggagg
      961 ctgaaccagt ggctgatggt ccacctgttc cactgccgca tggtcctcac ctaccacatg
     1021 tggtgggtgt gcctgggcca ctgggacagc ctggcccgca gcctcttccc gccgcactgg
     1081 gcgctcttcg tggttgggct gggcctcctc acggtcctca tcaaccccta ctggacccgc
     1141 aagaagacgc agcagctgct caaccctgtg gactggaact tcgcgcccgg ccgccccaac
     1201 gggccggcgc cgccgaagaa gacgaggtag cggcctcggc cccgactgtc cccgcggcgc
     1261 cgaccccagg ccgcgtgagt actgacttcc acgtggcacc gagtactaca cctgagcgcg
     1321 cctcggggac agagtcccgc cgtggtgaca tcacggctcg atgtgctcat tcccgcgagc
     1381 ttggcctgtg tgcgccgtcg ccccaaggag ggcccgcgtg gacgggtcgc actaaagcgt
     1441 gtgtgcgtct tattcaacag ccccgttatt tttagttgga gagaactgtc ccacgagaac
     1501 ataatccggt cccttaccct gctgacattc ccagggctga gatgtaagcc gcgtctccgc
     1561 agcgccatct cgtggtgagc gcggagcatc ggcctggctt gcggctgggg gaggcggagg
     1621 ggtcttctca ccagggaagc tcatccggtg aagagttttg gttccgtttt gtgtttctct
     1681 gttgacacat taagagaggt gttagtaatc agatttgtct agattttaga gctgttttta
     1741 actaagtttc aaacaggtgc cccgccagac cctacctaac cccctggttg gtgtctctct
     1801 gtaggtttcg ccagacccta ccccctggtt ggtgtgtctc taggtttcaa gtcggggcat
     1861 tggtcactct ccctgcgagc tgtgggtgga cctggcccct tggagtgccc ggctgcaggg
     1921 ccccctcctc acctcccggt gacgagcccg ggcaccacct ttaccgtgtg gggccccggt
     1981 ggaatctaca cgccgacccg caattttact gacgaatacg tactgacatc ttattcttgc
     2041 catgagtggg caattaaaat gaaaatctcg tatttactga aagtgccctt gaactgtttt
     2101 tgaaaaacac atttgttggt cgtgagaatc acgtgtacct tgtgcttggt ctgtaacttg
     2161 gcccctcaga agggtgtgtg ctgatttctg gtactgtgac ttgactgtac gtaggtcagg
     2221 agatgtgata cctgcttgtg tcattttgag aagtgtttca atcctagaaa catccagcaa
     2281 accgtgtccc tgctgagact tctctctccc tcgctgaaga ccccgggcac ctgccaccca
     2341 ctctcccgtc cgcaagcggt ggtggtggtg ggggggagct ggctgtgttt ccagccggtc
     2401 agaactttaa taaagtaacc gatgtttaca gaacccg
//
LOCUS       XM_032618175            2170 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X10, mRNA.
ACCESSION   XM_032618175
VERSION     XM_032618175.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2170
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 long SRA reads, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             55..963
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X4"
                     /protein_id="XP_032474066.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKAGCADSLLWRLNQWL
                     MVHLFHCRMVLTYHMWWVCLGHWDSLARSLFPPHWALFVVGLGLLTVLINPYWTRKKT
                     QQLLNPVDWNFAPGRPNGPAPPKKTR"
     misc_feature    310..906
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 cggcgacgtg tgcgccggtc acgacacatc cgtacgcagg tggaggatgg gcgcatgagg
       61 gtcccggggc cgtggcctgg tgcagcgtgt ggaccccggc ccagcctgta cgacgtcggc
      121 agcatgagcc tcccgagcag cgggccggcg ggcagcgtct ttgacctgga ctgcacctcc
      181 gggcaggtcc gctgggcgct ggtggctgcc ggctgcacct tctacctggg cgtcttcgtg
      241 gcctgccacc agctgtcatc ctccctgaac gccacctacc gctccctggg ggcccgagag
      301 caggtcttct ggaacctggc ggccacgcgc gcagtctttg gcctccaggg caccgcggcg
      361 gggctacggg cgctgctgct ggaccccgtg ctgcaggccg acaaagtgct tggccagcag
      421 aactggtgct ggttccacat caccacggca accggattct tcctctttga gaacctcgcg
      481 ctccatgtgt ccaatgcgct gttccacaca ttcgacgggt tcctggccgt ccaccacctc
      541 ttcgccttcc tcgggtttct cggctccgtg gtcaacctcc aagcgggcca ctacctgccc
      601 atgatcacgc tgctcctgga gatgagcacg cccttcacct gcatctcctg gatgctccta
      661 aaggccggct gtgcggactc gctgctctgg aggctgaacc agtggctgat ggtccacctg
      721 ttccactgcc gcatggtcct cacctaccac atgtggtggg tgtgcctggg ccactgggac
      781 agcctggccc gcagcctctt cccgccgcac tgggcgctct tcgtggttgg gctgggcctc
      841 ctcacggtcc tcatcaaccc ctactggacc cgcaagaaga cgcagcagct gctcaaccct
      901 gtggactgga acttcgcgcc cggccgcccc aacgggccgg cgccgccgaa gaagacgagg
      961 tagcggcctc ggccccgact gtccccgcgg cgccgacccc aggccgcgtg agtactgact
     1021 tccacgtggc accgagtact acacctgagc gcgcctcggg gacagagtcc cgccgtggtg
     1081 acatcacggc tcgatgtgct cattcccgcg agcttggcct gtgtgcgccg tcgccccaag
     1141 gagggcccgc gtggacgggt cgcactaaag cgtgtgtgcg tcttattcaa cagccccgtt
     1201 atttttagtt ggagagaact gtcccacgag aacataatcc ggtcccttac cctgctgaca
     1261 ttcccagggc tgagatgtaa gccgcgtctc cgcagcgcca tctcgtggtg agcgcggagc
     1321 atcggcctgg cttgcggctg ggggaggcgg aggggtcttc tcaccaggga agctcatccg
     1381 gtgaagagtt ttggttccgt tttgtgtttc tctgttgaca cattaagaga ggtgttagta
     1441 atcagatttg tctagatttt agagctgttt ttaactaagt ttcaaacagg tgccccgcca
     1501 gaccctacct aaccccctgg ttggtgtctc tctgtaggtt tcgccagacc ctaccccctg
     1561 gttggtgtgt ctctaggttt caagtcgggg cattggtcac tctccctgcg agctgtgggt
     1621 ggacctggcc ccttggagtg cccggctgca gggccccctc ctcacctccc ggtgacgagc
     1681 ccgggcacca cctttaccgt gtggggcccc ggtggaatct acacgccgac ccgcaatttt
     1741 actgacgaat acgtactgac atcttattct tgccatgagt gggcaattaa aatgaaaatc
     1801 tcgtatttac tgaaagtgcc cttgaactgt ttttgaaaaa cacatttgtt ggtcgtgaga
     1861 atcacgtgta ccttgtgctt ggtctgtaac ttggcccctc agaagggtgt gtgctgattt
     1921 ctggtactgt gacttgactg tacgtaggtc aggagatgtg atacctgctt gtgtcatttt
     1981 gagaagtgtt tcaatcctag aaacatccag caaaccgtgt ccctgctgag acttctctct
     2041 ccctcgctga agaccccggg cacctgccac ccactctccc gtccgcaagc ggtggtggtg
     2101 gtggggggga gctggctgtg tttccagccg gtcagaactt taataaagta accgatgttt
     2161 acagaacccg
//
LOCUS       XM_032618176            3906 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X11, mRNA.
ACCESSION   XM_032618176
VERSION     XM_032618176.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3906
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746649"
     CDS             2333..3241
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X4"
                     /protein_id="XP_032474067.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKAGCADSLLWRLNQWL
                     MVHLFHCRMVLTYHMWWVCLGHWDSLARSLFPPHWALFVVGLGLLTVLINPYWTRKKT
                     QQLLNPVDWNFAPGRPNGPAPPKKTR"
     misc_feature    2588..3184
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 cgggcgtggg ctcaggccgc ggttcgggcc gcggtgggag gggtgcagcc ggccggcccg
       61 cgggcagcga gcccgagaga ggacactggc agacgggccg agaccgtcca cggcgtgctc
      121 tctgtgggac ttgtttatat tttctgaatt ttgtttgttg agcgtgtatt ttaattttgg
      181 aaaaatatgt ttacaaactg tcgcagtata attctcaaaa tgttagaaac gtaattcctg
      241 agcaaacagg gagcacaggt caggttaaat cgcctaggaa ggacccggcg gaggaaagcc
      301 cgccagaggc tgccaccagg aatgctggtc ggggagggag ccactgggat tatcccctgg
      361 ggggagaggg gcgttacggt gcctcatcac cctatcagtg ttgctgggtt gacctcacag
      421 actgaagtct gggccggctg agacgcaggg gctgcggggc gggtctccga ggaccccgga
      481 ctggaggagc gggggtcctg gctctgcggc tgtgcgggga cggggacggg gacggggacg
      541 gggacggcgg cctcaggaga cacgaagaag ccctagggct gggctcgggg tgaacggggt
      601 gacccagtgc ccccgtgccg ggatgggtga ggggtgtggt cagggtgggt ggctgccgag
      661 ccctggagct ctgcctgcct ctggtctgtg ccgccttccg gagcagggcc tggccacgcc
      721 ctggggtgcc ccctagccac ggggcagccg ggccaccgca gggctccggg ggggccgcct
      781 gggttgctgc ggacccccac ccaaggcctg gcctcatccc atcatggctc aagtgggtca
      841 cccacctcac ctgtgtgtcc ccgggaccca gggcaacagg ttggaccaga ccagccggcc
      901 cagaagctct gtggaagcgg ctgtgtagga gggtgtgtcc gaggcgggtt tgagcagcga
      961 tccagatggg ggagagttga tagggattga agggcggcga gcattgggtt tttacaggaa
     1021 gttgtttctg tttctgtgat ggccccgagc gttccgccgc cactgatcgg tctcagctga
     1081 gtatttcagc gtctgacctt agcccgcctg catttctttc tgtagaaagg ttactagaag
     1141 gcttgaggac ccagaagccg ggctgaggtt tctcggtggt gaatttgaga tgacggtggt
     1201 ttttcctggg tctctggggc cttggagcct tcctcttcct tgggccttgg ctctgcgccc
     1261 cggcctccac cctggctggg cccacgcttc agaagcaggc ttctcccgcg tgctcggagc
     1321 ctgaggctgg cgggtggctc tttgtgctgt agcctcgctt gtccactctc cgttccctct
     1381 caggccctgc cccggccctc aggaccccac gtctgtctcc ttgtgcctct tggtgggagg
     1441 aggaaaaggg ctgtttcagg ccttctctcc aggataagca gggtttgttg gattggctta
     1501 catttaaaac cacctgcggc gcacagaaga gcctctcagg tcttcaggac actgcctgct
     1561 ttaggaaaag gaagccacta aaccctccct ccttggagtc acaggatctt acatctgggg
     1621 ggactggaat tcatgccggt tcagtggttc tgcacttgct tagagcgcct gggcacataa
     1681 gaaacaccca agcctggccc cgccccaggg cagcgaagtc aggaccttgg gagagggcct
     1741 gggcatcgtc ctcggtgtgg gaaggacaga cgaacctgca ggtgatctaa tgcacctggg
     1801 cccagagctc tgagtcctga tcatggtgca atccgaggcc ccactgggta gcttcttgat
     1861 ttgaggcaaa taactaaacc tgagctctct tctttccatt ggaaatgtac gactccctgt
     1921 ttagcaggtt aaacggccta actgaacgtg cctggcacgg agtaggtact tcatattagc
     1981 acccggcacc cactctgctg tatttatgtg tatttttcgt tcctgtagtc agacactgga
     2041 gtcctgtttt ccttgctccg aaatagtgga accaagatca gaacccactg ttttgttctt
     2101 tggtcccagt gccctggagt ccccccagcc ttcgtgaagg ggcacctata ccaaccactc
     2161 gccctgggca agcttgagtc attgttttag tcagagctct tcagagtctt ggggaccctc
     2221 ccgtttcaag gcagaggttc cacaggagcg tagagatgca gtcgtggcaa aatgggaagt
     2281 cgcccagacc gcgtgacagg ctcgtggaaa ggacaaggtg gaggatgggc gcatgagggt
     2341 cccggggccg tggcctggtg cagcgtgtgg accccggccc agcctgtacg acgtcggcag
     2401 catgagcctc ccgagcagcg ggccggcggg cagcgtcttt gacctggact gcacctccgg
     2461 gcaggtccgc tgggcgctgg tggctgccgg ctgcaccttc tacctgggcg tcttcgtggc
     2521 ctgccaccag ctgtcatcct ccctgaacgc cacctaccgc tccctggggg cccgagagca
     2581 ggtcttctgg aacctggcgg ccacgcgcgc agtctttggc ctccagggca ccgcggcggg
     2641 gctacgggcg ctgctgctgg accccgtgct gcaggccgac aaagtgcttg gccagcagaa
     2701 ctggtgctgg ttccacatca ccacggcaac cggattcttc ctctttgaga acctcgcgct
     2761 ccatgtgtcc aatgcgctgt tccacacatt cgacgggttc ctggccgtcc accacctctt
     2821 cgccttcctc gggtttctcg gctccgtggt caacctccaa gcgggccact acctgcccat
     2881 gatcacgctg ctcctggaga tgagcacgcc cttcacctgc atctcctgga tgctcctaaa
     2941 ggccggctgt gcggactcgc tgctctggag gctgaaccag tggctgatgg tccacctgtt
     3001 ccactgccgc atggtcctca cctaccacat gtggtgggtg tgcctgggcc actgggacag
     3061 cctggcccgc agcctcttcc cgccgcactg ggcgctcttc gtggttgggc tgggcctcct
     3121 cacggtcctc atcaacccct actggacccg caagaagacg cagcagctgc tcaaccctgt
     3181 ggactggaac ttcgcgcccg gccgccccaa cgggccggcg ccgccgaaga agacgaggta
     3241 gcggcctcgg ccccgactgt ccccgcggcg ccgaccccag gccgcgtttc gccagaccct
     3301 accccctggt tggtgtgtct ctaggtttca agtcggggca ttggtcactc tccctgcgag
     3361 ctgtgggtgg acctggcccc ttggagtgcc cggctgcagg gccccctcct cacctcccgg
     3421 tgacgagccc gggcaccacc tttaccgtgt ggggccccgg tggaatctac acgccgaccc
     3481 gcaattttac tgacgaatac gtactgacat cttattcttg ccatgagtgg gcaattaaaa
     3541 tgaaaatctc gtatttactg aaagtgccct tgaactgttt ttgaaaaaca catttgttgg
     3601 tcgtgagaat cacgtgtacc ttgtgcttgg tctgtaactt ggcccctcag aagggtgtgt
     3661 gctgatttct ggtactgtga cttgactgta cgtaggtcag gagatgtgat acctgcttgt
     3721 gtcattttga gaagtgtttc aatcctagaa acatccagca aaccgtgtcc ctgctgagac
     3781 ttctctctcc ctcgctgaag accccgggca cctgccaccc actctcccgt ccgcaagcgg
     3841 tggtggtggt gggggggagc tggctgtgtt tccagccggt cagaacttta ataaagtaac
     3901 cgatgt
//
LOCUS       XM_032618177            1793 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X12, mRNA.
ACCESSION   XM_032618177
VERSION     XM_032618177.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1793
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             208..1116
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X4"
                     /protein_id="XP_032474068.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKAGCADSLLWRLNQWL
                     MVHLFHCRMVLTYHMWWVCLGHWDSLARSLFPPHWALFVVGLGLLTVLINPYWTRKKT
                     QQLLNPVDWNFAPGRPNGPAPPKKTR"
     misc_feature    463..1059
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 cggggtctcc gggtcccgtc ggcgtgttct cgtggagttg agagccccca gtcctggcgc
       61 ggaggagccc cgagttcccc gcgtgcggcc cgcggggctt ggcggccctg cctggactgt
      121 gggtggtggg gcggggtcca cctctccgtc ctcaggtgtg cagggcagag gctcaggtcg
      181 ccccatctgc aggtggagga tgggcgcatg agggtcccgg ggccgtggcc tggtgcagcg
      241 tgtggacccc ggcccagcct gtacgacgtc ggcagcatga gcctcccgag cagcgggccg
      301 gcgggcagcg tctttgacct ggactgcacc tccgggcagg tccgctgggc gctggtggct
      361 gccggctgca ccttctacct gggcgtcttc gtggcctgcc accagctgtc atcctccctg
      421 aacgccacct accgctccct gggggcccga gagcaggtct tctggaacct ggcggccacg
      481 cgcgcagtct ttggcctcca gggcaccgcg gcggggctac gggcgctgct gctggacccc
      541 gtgctgcagg ccgacaaagt gcttggccag cagaactggt gctggttcca catcaccacg
      601 gcaaccggat tcttcctctt tgagaacctc gcgctccatg tgtccaatgc gctgttccac
      661 acattcgacg ggttcctggc cgtccaccac ctcttcgcct tcctcgggtt tctcggctcc
      721 gtggtcaacc tccaagcggg ccactacctg cccatgatca cgctgctcct ggagatgagc
      781 acgcccttca cctgcatctc ctggatgctc ctaaaggccg gctgtgcgga ctcgctgctc
      841 tggaggctga accagtggct gatggtccac ctgttccact gccgcatggt cctcacctac
      901 cacatgtggt gggtgtgcct gggccactgg gacagcctgg cccgcagcct cttcccgccg
      961 cactgggcgc tcttcgtggt tgggctgggc ctcctcacgg tcctcatcaa cccctactgg
     1021 acccgcaaga agacgcagca gctgctcaac cctgtggact ggaacttcgc gcccggccgc
     1081 cccaacgggc cggcgccgcc gaagaagacg aggtagcggc ctcggccccg actgtccccg
     1141 cggcgccgac cccaggccgc gtttcgccag accctacccc ctggttggtg tgtctctagg
     1201 tttcaagtcg gggcattggt cactctccct gcgagctgtg ggtggacctg gccccttgga
     1261 gtgcccggct gcagggcccc ctcctcacct cccggtgacg agcccgggca ccacctttac
     1321 cgtgtggggc cccggtggaa tctacacgcc gacccgcaat tttactgacg aatacgtact
     1381 gacatcttat tcttgccatg agtgggcaat taaaatgaaa atctcgtatt tactgaaagt
     1441 gcccttgaac tgtttttgaa aaacacattt gttggtcgtg agaatcacgt gtaccttgtg
     1501 cttggtctgt aacttggccc ctcagaaggg tgtgtgctga tttctggtac tgtgacttga
     1561 ctgtacgtag gtcaggagat gtgatacctg cttgtgtcat tttgagaagt gtttcaatcc
     1621 tagaaacatc cagcaaaccg tgtccctgct gagacttctc tctccctcgc tgaagacccc
     1681 gggcacctgc cacccactct cccgtccgca agcggtggtg gtggtggggg ggagctggct
     1741 gtgtttccag ccggtcagaa ctttaataaa gtaaccgatg tttacagaac ccg
//
LOCUS       XM_032618178            1628 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLN8 transmembrane ER and ERGIC protein
            (CLN8), transcript variant X13, mRNA.
ACCESSION   XM_032618178
VERSION     XM_032618178.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1628
                     /gene="CLN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746649"
     CDS             55..963
                     /gene="CLN8"
                     /codon_start=1
                     /product="protein CLN8 isoform X4"
                     /protein_id="XP_032474069.1"
                     /db_xref="GeneID:116746649"
                     /translation="MRVPGPWPGAACGPRPSLYDVGSMSLPSSGPAGSVFDLDCTSGQ
                     VRWALVAAGCTFYLGVFVACHQLSSSLNATYRSLGAREQVFWNLAATRAVFGLQGTAA
                     GLRALLLDPVLQADKVLGQQNWCWFHITTATGFFLFENLALHVSNALFHTFDGFLAVH
                     HLFAFLGFLGSVVNLQAGHYLPMITLLLEMSTPFTCISWMLLKAGCADSLLWRLNQWL
                     MVHLFHCRMVLTYHMWWVCLGHWDSLARSLFPPHWALFVVGLGLLTVLINPYWTRKKT
                     QQLLNPVDWNFAPGRPNGPAPPKKTR"
     misc_feature    310..906
                     /gene="CLN8"
                     /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC;
                     smart00724"
                     /db_xref="CDD:214789"
ORIGIN      
        1 cggcgacgtg tgcgccggtc acgacacatc cgtacgcagg tggaggatgg gcgcatgagg
       61 gtcccggggc cgtggcctgg tgcagcgtgt ggaccccggc ccagcctgta cgacgtcggc
      121 agcatgagcc tcccgagcag cgggccggcg ggcagcgtct ttgacctgga ctgcacctcc
      181 gggcaggtcc gctgggcgct ggtggctgcc ggctgcacct tctacctggg cgtcttcgtg
      241 gcctgccacc agctgtcatc ctccctgaac gccacctacc gctccctggg ggcccgagag
      301 caggtcttct ggaacctggc ggccacgcgc gcagtctttg gcctccaggg caccgcggcg
      361 gggctacggg cgctgctgct ggaccccgtg ctgcaggccg acaaagtgct tggccagcag
      421 aactggtgct ggttccacat caccacggca accggattct tcctctttga gaacctcgcg
      481 ctccatgtgt ccaatgcgct gttccacaca ttcgacgggt tcctggccgt ccaccacctc
      541 ttcgccttcc tcgggtttct cggctccgtg gtcaacctcc aagcgggcca ctacctgccc
      601 atgatcacgc tgctcctgga gatgagcacg cccttcacct gcatctcctg gatgctccta
      661 aaggccggct gtgcggactc gctgctctgg aggctgaacc agtggctgat ggtccacctg
      721 ttccactgcc gcatggtcct cacctaccac atgtggtggg tgtgcctggg ccactgggac
      781 agcctggccc gcagcctctt cccgccgcac tgggcgctct tcgtggttgg gctgggcctc
      841 ctcacggtcc tcatcaaccc ctactggacc cgcaagaaga cgcagcagct gctcaaccct
      901 gtggactgga acttcgcgcc cggccgcccc aacgggccgg cgccgccgaa gaagacgagg
      961 tagcggcctc ggccccgact gtccccgcgg cgccgacccc aggccgcgtt tcgccagacc
     1021 ctaccccctg gttggtgtgt ctctaggttt caagtcgggg cattggtcac tctccctgcg
     1081 agctgtgggt ggacctggcc ccttggagtg cccggctgca gggccccctc ctcacctccc
     1141 ggtgacgagc ccgggcacca cctttaccgt gtggggcccc ggtggaatct acacgccgac
     1201 ccgcaatttt actgacgaat acgtactgac atcttattct tgccatgagt gggcaattaa
     1261 aatgaaaatc tcgtatttac tgaaagtgcc cttgaactgt ttttgaaaaa cacatttgtt
     1321 ggtcgtgaga atcacgtgta ccttgtgctt ggtctgtaac ttggcccctc agaagggtgt
     1381 gtgctgattt ctggtactgt gacttgactg tacgtaggtc aggagatgtg atacctgctt
     1441 gtgtcatttt gagaagtgtt tcaatcctag aaacatccag caaaccgtgt ccctgctgag
     1501 acttctctct ccctcgctga agaccccggg cacctgccac ccactctccc gtccgcaagc
     1561 ggtggtggtg gtggggggga gctggctgtg tttccagccg gtcagaactt taataaagta
     1621 accgatgt
//
LOCUS       XR_004347816            3642 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746650
            (LOC116746650), transcript variant X1, misc_RNA.
ACCESSION   XR_004347816
VERSION     XR_004347816.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3642
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3642
                     /gene="LOC116746650"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746650"
     misc_RNA        1..3642
                     /gene="LOC116746650"
                     /product="uncharacterized LOC116746650, transcript variant
                     X1"
                     /db_xref="GeneID:116746650"
ORIGIN      
        1 ctttgcgacg gagttcccca cgtggccggc tggagccccg cgctgggggc agcggccacg
       61 ggaggagggg actggatgcc aggtgagcca gcgtccccaa aggtcagact cgtttctagt
      121 tgtaagagtg aggttgacac ccaaaataaa ccccgagtga tgcccacccc ttatggatgc
      181 atgtggatgc tttcagttta cctgtatctt tactaaactt ctgctctaat gggagagttt
      241 attaattcaa cgtttctctt tttaaataaa tcttcccgtt tttcagtaac tagactatac
      301 ggtacacatt gtcttgccag gtcatgttta gtgaagtgga aatctcagaa atgttttctt
      361 cctctgagtg ctctggagcg gaccctgccc gtccggggcc tgcagctccc cgcagcccgg
      421 ccgagcccag ctacgcagag caaggaagct gcaccgtgac accccgtccc acacgatggg
      481 aagggccgtg ggagccgctt ctaactttct gccccggggg gcccacgaac cacagttgga
      541 agggggcaca tttcagccac agtttctttg gtttgtatcg agatcaccct cagctctttt
      601 ccaagaaata cggagcctat ttggtccact ccagagattt tatttccgca caagacagac
      661 caagagcccg gaatgttgga gccttcacgg attttgtgca gaaagtcaag cttcagaaag
      721 ttcaaggcca gccacgccag gactctcatt ttccgtcttc cggttccccc acccttgtca
      781 cggggacaag cctaaggccc gggaagcagg cgtccccggg ggcatctctg cgctgctgca
      841 cggcccggcc cgccccctct ggatcgcctg tcaggtccag caggggaccc gtgtcgctcc
      901 gatccaggcc ttcagcgccg cccacccgga cgggctccgg ctccgcaggg tcacagccgt
      961 gctgcagggg acacccgtgt gccccacctg ctgtgggccg gagcttcggg gtcatcgcag
     1021 gagtggaagc actgggtcca ggcctctgtg gatcttcttc tcccggctga caccaggggg
     1081 ctcaggtcca cgtggcttgg ccccctgccc tgccgggccc gagcagacgc tggggtcccg
     1141 gcaccgcccc tcccgtctct tccgaccgtg tggccactcg tgcttgccag ctgtgtcgcc
     1201 ggtgcaggct catcgtgagg gctccctgtt cccgttgatc tgtttgcggt gtggggtgtc
     1261 cctcttcttc ctgatgattc tgtgcctctt gaagcccggt tgcccgtcga gcacctcgga
     1321 gtcggtgtct ccccagccgt cacccccagg ctctctgcgc ctgtgcaggt cacgcagggg
     1381 agggcctcat gagagcgtgt tctccagccc aacaccgcgg ttctgtttag tctgatgcat
     1441 ctaacgtaac tactcatctg ggtggacgca ggcctgatcc gctcttgttc atcgtgccca
     1501 tgccgcttct gagtcggtct gttgttctca tgctccattg taatttctcc tttttaactg
     1561 tgcactcagc tttcaggggc ggctctggga atcgcgttct tcatccttcg cccgtcagtc
     1621 caggttattc cgtatcgtgt gacgtgagag cgttgattgt cctccagttt ctataacgtg
     1681 tattgattga agttcccact ttgctcttgt tgcaatttca ccatttatat tttcaaaaaa
     1741 tgtctttcat ctacacttca tcattattaa tgcatgcttt ttaaaaatat attttggcaa
     1801 acctcttaat gtctagttgt tttggttggt tctatagttt atttgtatct cctcaagatt
     1861 tgtttatatc attcatcttt ccaagcagta ggggtttttg gttatttttt tttccaataa
     1921 tctatttatt tgtccttata tttatgtcct tccttcttgt tactttgagt ttatttagtt
     1981 ttcctctttg taaattttta tattgaatat tgttttcctt taagtattgc tttaactttg
     2041 tcccacaaat tctgacattt ttgttttcat tttcattcag ttctaaatat ttcttaaccc
     2101 ccttctgatt tacttttaaa tgcaagcgtt atttagtaat gttattttct ttccaaaaat
     2161 gtggtattta gaaaaaaaag tctatcgttt tggtatttgt ttggaaatgt attgtcctgt
     2221 tctagaaaga acatgaccac tttgttactt tggaatttat tgtgtttctt tctgtccagc
     2281 agctgcccgg gcgcttttgt ctcaggcaca gcccccagtg cctgccgctg actggacatc
     2341 gctgggccat ggtgctttcg attccctgat gaaggaagca aggctgtggt cctggtctga
     2401 gacatctgga gtgtctcggt ctcctggcac tgcctacagt cgccccctat tagaccacgg
     2461 ctcatctgca cgccggttgg aacagcaggg ccctggtaac ctgaacgtgg tgtagacact
     2521 cgtagaaact gcttaatttg ctcttcagcc tgactcagag ccacctacaa gtttgtccgg
     2581 aagtgagctg tgtgaatgtt catataatcc ctcatccagt ctcactggtc tccccctgat
     2641 aatctcaaaa ggaaacaaat gttttccaaa acaggtggat ctgaggttga ggcgaaccaa
     2701 tggaagggcc tcaggccagg taaggaataa gcattcatca tcttagccag ttgggtttta
     2761 attgttccat ttgttctttc tactaaccca gaggactggt ggtgataagc acaatggaaa
     2821 tgctgcataa ttggccaaat cttaaccgtt tgtccagtaa aatgagttcc tctgtcacta
     2881 tgtggttctg aggggactcc ccaaatgggc atcactcttg gtaaaataaa atgtcctaca
     2941 gattgggctg tggcccttca gcatgggatg cctcaaccca gtgtgaaaac acacaaatcg
     3001 taacaagaac atactgataa ccttgagagg ggggcgttgt ataaaatcag tctgccaagt
     3061 cgcaacggga cctgcaggtc gtggcagatt cccttgagaa ctatgtaacg gcttccctgg
     3121 cttatatttt ggacaagtgg tacatcttga ataattcccg agctctcaca aaagcctttc
     3181 aacagttttt taccccataa taccgtctac ctgggttcca gtgtgttaac tcgtgaatat
     3241 attgcaaaat agaatattga gcttcaaagg gaaggatagg cctcccgtct gggtgtatcc
     3301 acagctcttt gtgtgagttc aggctgcctc ccttgtgtgt ccaggtgtct gttttctggt
     3361 gcctctcctt gaaaccggac cacgtcagta aggtttctgg gaggctgaaa gggaaaggca
     3421 gtggttagtt gcttgttttc gttttgcaga gcctcagtct tggcaacgtg atcagctaaa
     3481 gagtttcctt ttgcttcagc agtgtcagcc tttgaatgat accttaatgg caagtgcacc
     3541 tggctgcaga atggcatcca acaagtctgc tacatgttta ccatttttaa taggctgtcc
     3601 tcgggatgtt agaaatcctg ttgccaaagc atacccaagt ca
//
LOCUS       XR_004347817            3533 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746650
            (LOC116746650), transcript variant X2, misc_RNA.
ACCESSION   XR_004347817
VERSION     XR_004347817.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3533
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3533
                     /gene="LOC116746650"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746650"
     misc_RNA        1..3533
                     /gene="LOC116746650"
                     /product="uncharacterized LOC116746650, transcript variant
                     X2"
                     /db_xref="GeneID:116746650"
ORIGIN      
        1 ctttgcgacg gagttcccca cgtggccggc tggagccccg cgctgggggc agcggccacg
       61 ggaggagggg actggatgcc aggtgagcca gcgtccccaa aggtcagact cgtttctagt
      121 tgtaagagtg aggttgacac ccaaaataaa ccccgagtga tgcccacccc ttatggatgc
      181 atgtggatgc tttcagttta cctgtatctt tactaaactt ctgctctaat gggagagttt
      241 attaattcaa cgtttctctt tttaaataaa tcttcccgtt tttcagtaac tagactatac
      301 ggtacacatt gtcttgccag gtcatgttta gtgaagtgga aatctcagaa atgttttctt
      361 cctctgagtg ctctggagcg gaccctgccc gtccggggcc tgcagctccc cgcagcccgg
      421 ccgagcccag ctacgcagag caaggaagct gcaccgtgac accccgtccc acacgatggg
      481 aagggccgtg ggagccgctt ctaactttct gccccggggg gcccacgaac cacagttgga
      541 agggggcaca tttcagccac agtttctttg gtttgtatcg agatcaccct cagctctttt
      601 ccaagaaata cggagcctat ttggtccact ccagagattt tatttccgca caagacagac
      661 caagagcccg gaatgttgga gccttcacgg attttgtgca gaaagtcaag cttcagaaag
      721 ttcaaggcca gccacgccag gactctcatt ttccgtcttc cggttccccc acccttgtca
      781 cggggacaag cctaaggccc gggaagcagg cgtccccggg ggcatctctg cgctgctgca
      841 cggcccggcc cgccccctct ggatcgcctg tcaggtccag caggggaccc gtgtcgctcc
      901 gatccaggcc ttcagcgccg cccacccgga cgggctccgg ctccgcaggg tcacagccgt
      961 gctgcagggg acacccgtgt gccccacctg ctgtgggccg gagcttcggg gtcatcgcag
     1021 gagtggaagc actgggtcca ggcctctgtg gatcttcttc tcccggctga caccaggggg
     1081 ctcaggtcca cgtggcttgg ccccctgccc tgccgggccc gagcagacgc tggggtcccg
     1141 gcaccgcccc tcccgtctct tccgaccgtg tggccactcg tgcttgccag ctgtgtcgcc
     1201 ggtgcaggct catcgtgagg gctccctgtt cccgttgatc tgtttgcggt gtggggtgtc
     1261 cctcttcttc ctgatgattc tgtgcctctt gaagcccggt tgcccgtcga gcacctcgga
     1321 gtcggtgtct ccccagccgt cacccccagg ctctctgcgc ctgtgcaggt cacgcagggg
     1381 agggcctcat gagagcgtgt tctccagccc aacaccgcgg ttctgtttag tctgatgcat
     1441 ctaacgtaac tactcatctg ggtggacgca ggcctgatcc gctcttgttc atcgtgccca
     1501 tgccgcttct gagtcggtct gttgttctca tgctccattg taatttctcc tttttaactg
     1561 tgcactcagc tttcaggggc ggctctggga atcgcgttct tcatccttcg cccgtcagtc
     1621 caggttattc cgtatcgtgt gacgtgagag cgttgattgt cctccagttt ctataacgtg
     1681 tattgattga agttcccact ttgctcttgt tgcaatttca ccatttatat tttcaaaaaa
     1741 tgtctttcat ctacacttca tcattattaa tgcatgcttt ttaaaaatat attttggcaa
     1801 acctcttaat gtctagttgt tttggttggt tctatagttt atttgtatct cctcaagatt
     1861 tgtttatatc attcatcttt ccaagcagta ggggtttttg gttatttttt tttccaataa
     1921 tctatttatt tgtccttata tttatgtcct tccttcttgt tactttgagt ttatttagtt
     1981 ttcctctttg taaattttta tattgaatat tgttttcctt taagtattgc tttaactttg
     2041 tcccacaaat tctgacattt ttgttttcat tttcattcag ttctaaatat ttcttaaccc
     2101 ccttctgatt tacttttaaa tgcaagcgtt atttagtaat gttattttct ttccaaaaat
     2161 gtggtattta gaaaaaaaag tctatcgttt tggtatttgt ttggaaatgt attgtcctgt
     2221 tctagaaaga acatgaccac tttgttactt tggaatttat tgtgtttctt tctgtccagc
     2281 agctgcccgg gcgcttttgt ctcaggcaca gcccccagtg cctgccgctg actggacatc
     2341 gctgggccat ggtgctttcg attccctgat gaaggaagca aggctgtggt cctggtctga
     2401 gacatctgga gtgtctcggt ctcctggcac tgcctacagt cgccccctat tagaccacgg
     2461 ctcatctgca cgccggttgg aacagcaggt tcatataatc cctcatccag tctcactggt
     2521 ctccccctga taatctcaaa aggaaacaaa tgttttccaa aacaggtgga tctgaggttg
     2581 aggcgaacca atggaagggc ctcaggccag gtaaggaata agcattcatc atcttagcca
     2641 gttgggtttt aattgttcca tttgttcttt ctactaaccc agaggactgg tggtgataag
     2701 cacaatggaa atgctgcata attggccaaa tcttaaccgt ttgtccagta aaatgagttc
     2761 ctctgtcact atgtggttct gaggggactc cccaaatggg catcactctt ggtaaaataa
     2821 aatgtcctac agattgggct gtggcccttc agcatgggat gcctcaaccc agtgtgaaaa
     2881 cacacaaatc gtaacaagaa catactgata accttgagag gggggcgttg tataaaatca
     2941 gtctgccaag tcgcaacggg acctgcaggt cgtggcagat tcccttgaga actatgtaac
     3001 ggcttccctg gcttatattt tggacaagtg gtacatcttg aataattccc gagctctcac
     3061 aaaagccttt caacagtttt ttaccccata ataccgtcta cctgggttcc agtgtgttaa
     3121 ctcgtgaata tattgcaaaa tagaatattg agcttcaaag ggaaggatag gcctcccgtc
     3181 tgggtgtatc cacagctctt tgtgtgagtt caggctgcct cccttgtgtg tccaggtgtc
     3241 tgttttctgg tgcctctcct tgaaaccgga ccacgtcagt aaggtttctg ggaggctgaa
     3301 agggaaaggc agtggttagt tgcttgtttt cgttttgcag agcctcagtc ttggcaacgt
     3361 gatcagctaa agagtttcct tttgcttcag cagtgtcagc ctttgaatga taccttaatg
     3421 gcaagtgcac ctggctgcag aatggcatcc aacaagtctg ctacatgttt accattttta
     3481 ataggctgtc ctcgggatgt tagaaatcct gttgccaaag catacccaag tca
//
LOCUS       XR_004347818            3662 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746650
            (LOC116746650), transcript variant X3, misc_RNA.
ACCESSION   XR_004347818
VERSION     XR_004347818.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3662
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3662
                     /gene="LOC116746650"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746650"
     misc_RNA        1..3662
                     /gene="LOC116746650"
                     /product="uncharacterized LOC116746650, transcript variant
                     X3"
                     /db_xref="GeneID:116746650"
ORIGIN      
        1 ctttgcgacg gagttcccca cgtggccggc tggagccccg cgctgggggc agcggccacg
       61 ggaggagggg actggatgcc aggtgagcca gcgtccccaa aggtcagact cgtttctagt
      121 tgtaagagtg aggttgacac ccaaaataaa ccccgagtga tgcccacccc ttatggatgc
      181 atgtggatgc tttcagttta cctgtatctt tactaaactt ctgctctaat gggagagttt
      241 attaattcaa cgtttctctt tttaaataaa tcttcccgtt tttcagtaac tagactatac
      301 ggtacacatt gtcttgccag gtcatgttta gtgaagtgga aatctcagaa atgttttctt
      361 cctctgagtg ctctggagcg gaccctgccc gtccggggcc tgcagctccc cgcagcccgg
      421 ccgagcccag ctacgcagag caaggaagct gcaccgtgac accccgtccc acacgatggg
      481 aagggccgtg ggagccgctt ctaactttct gccccggggg gcccacgaac cacagttgga
      541 agggggcaca tttcagccac agtttctttg gtttgtatcg agatcaccct cagctctttt
      601 ccaagaaata cggagcctat ttggtccact ccagagattt tatttccgca caagacagac
      661 caagagcccg gaatgttgga gccttcacgg attttgtgca gaaagtcaag cttcagaaag
      721 ttcaaggcca gccacgccag gactctcatt ttccgtcttc cggttccccc acccttgtca
      781 cggggacaag cctaaggccc gggaagcagg cgtccccggg ggcatctctg cgctgctgca
      841 cggcccggcc cgccccctct ggatcgcctg tcaggtccag caggggaccc gtgtcgctcc
      901 gatccaggcc ttcagcgccg cccacccgga cgggctccgg ctccgcaggg tcacagccgt
      961 gctgcagggg acacccgtgt gccccacctg ctgtgggccg gagcttcggg gtcatcgcag
     1021 gagtggaagc actgggtcca ggcctctgtg gatcttcttc tcccggctga caccaggggg
     1081 ctcaggtcca cgtggcttgg ccccctgccc tgccgggccc gagcagacgc tggggtcccg
     1141 gcaccgcccc tcccgtctct tccgaccgtg tggccactcg tgcttgccag ctgtgtcgcc
     1201 ggtgcaggct catcgtgagg gctccctgtt cccgttgatc tgtttgcggt gtggggtgtc
     1261 cctcttcttc ctgatgattc tgtgcctctt gaagcccggt tgcccgtcga gcacctcgga
     1321 gtcggtgtct ccccagccgt cacccccagg ctctctgcgc ctgtgcaggt cacgcagggg
     1381 agggcctcat gagagcgtgt tctccagccc aacaccgcgg ttctgtttag tctgatgcat
     1441 ctaacgtaac tactcatctg ggtggacgca ggcctgatcc gctcttgttc atcgtgccca
     1501 tgccgcttct gagtcggtct gttgttctca tgctccattg taatttctcc tttttaactg
     1561 tgcactcagc tttcaggggc ggctctggga atcgcgttct tcatccttcg cccgtcagtc
     1621 caggttattc cgtatcgtgt gacgtgagag cgttgattgt cctccagttt ctataacgtg
     1681 tattgattga agttcccact ttgctcttgt tgcaatttca ccatttatat tttcaaaaaa
     1741 tgtctttcat ctacacttca tcattattaa tgcatgcttt ttaaaaatat attttggcaa
     1801 acctcttaat gtctagttgt tttggttggt tctatagttt atttgtatct cctcaagatt
     1861 tgtttatatc attcatcttt ccaagcagta ggggtttttg gttatttttt tttccaataa
     1921 tctatttatt tgtccttata tttatgtcct tccttcttgt tactttgagt ttatttagtt
     1981 ttcctctttg taaattttta tattgaatat tgttttcctt taagtattgc tttaactttg
     2041 tcccacaaat tctgacattt ttgttttcat tttcattcag ttctaaatat ttcttaaccc
     2101 ccttctgatt tacttttaaa tgcaagcgtt atttagtaat gttattttct ttccaaaaat
     2161 gtggtattta gaaaaaaaag tctatcgttt tggtatttgt ttggaaatgt attgtcctgt
     2221 tctagaaaga acatgaccac tttgttactt tggaatttat tgtgtttctt tctgtccagc
     2281 agctgcccgg gcgcttttgt ctcaggcaca gcccccagtg cctgccgctg actggacatc
     2341 gctgggccat ggtgctttcg attccctgat gaaggaagca aggctgtggt cctggtctga
     2401 gacatctggt tttcccttct gggtcaagga gtgtctcggt ctcctggcac tgcctacagt
     2461 cgccccctat tagaccacgg ctcatctgca cgccggttgg aacagcaggg ccctggtaac
     2521 ctgaacgtgg tgtagacact cgtagaaact gcttaatttg ctcttcagcc tgactcagag
     2581 ccacctacaa gtttgtccgg aagtgagctg tgtgaatgtt catataatcc ctcatccagt
     2641 ctcactggtc tccccctgat aatctcaaaa ggaaacaaat gttttccaaa acaggtggat
     2701 ctgaggttga ggcgaaccaa tggaagggcc tcaggccagg taaggaataa gcattcatca
     2761 tcttagccag ttgggtttta attgttccat ttgttctttc tactaaccca gaggactggt
     2821 ggtgataagc acaatggaaa tgctgcataa ttggccaaat cttaaccgtt tgtccagtaa
     2881 aatgagttcc tctgtcacta tgtggttctg aggggactcc ccaaatgggc atcactcttg
     2941 gtaaaataaa atgtcctaca gattgggctg tggcccttca gcatgggatg cctcaaccca
     3001 gtgtgaaaac acacaaatcg taacaagaac atactgataa ccttgagagg ggggcgttgt
     3061 ataaaatcag tctgccaagt cgcaacggga cctgcaggtc gtggcagatt cccttgagaa
     3121 ctatgtaacg gcttccctgg cttatatttt ggacaagtgg tacatcttga ataattcccg
     3181 agctctcaca aaagcctttc aacagttttt taccccataa taccgtctac ctgggttcca
     3241 gtgtgttaac tcgtgaatat attgcaaaat agaatattga gcttcaaagg gaaggatagg
     3301 cctcccgtct gggtgtatcc acagctcttt gtgtgagttc aggctgcctc ccttgtgtgt
     3361 ccaggtgtct gttttctggt gcctctcctt gaaaccggac cacgtcagta aggtttctgg
     3421 gaggctgaaa gggaaaggca gtggttagtt gcttgttttc gttttgcaga gcctcagtct
     3481 tggcaacgtg atcagctaaa gagtttcctt ttgcttcagc agtgtcagcc tttgaatgat
     3541 accttaatgg caagtgcacc tggctgcaga atggcatcca acaagtctgc tacatgttta
     3601 ccatttttaa taggctgtcc tcgggatgtt agaaatcctg ttgccaaagc atacccaagt
     3661 ca
//
LOCUS       XR_004347819            8677 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746650
            (LOC116746650), transcript variant X4, misc_RNA.
ACCESSION   XR_004347819
VERSION     XR_004347819.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8677
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8677
                     /gene="LOC116746650"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, and 89%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746650"
     misc_RNA        1..8677
                     /gene="LOC116746650"
                     /product="uncharacterized LOC116746650, transcript variant
                     X4"
                     /db_xref="GeneID:116746650"
ORIGIN      
        1 ctttgcgacg gagttcccca cgtggccggc tggagccccg cgctgggggc agcggccacg
       61 ggaggagggg actggatgcc aggtgagcca gcgtccccaa aggtcagact cgtttctagt
      121 tgtaagagtg aggttgacac ccaaaataaa ccccgagtga tgcccacccc ttatggatgc
      181 atgtggatgc tttcagttta cctgtatctt tactaaactt ctgctctaat gggagagttt
      241 attaattcaa cgtttctctt tttaaataaa tcttcccgtt tttcagtaac tagactatac
      301 ggtacacatt gtcttgccag gtcatgttta gtgaagtgga aatctcagaa atgttttctt
      361 cctctgagtg ctctggagcg gaccctgccc gtccggggcc tgcagctccc cgcagcccgg
      421 ccgagcccag ctacgcagag caaggaagct gcaccgtgac accccgtccc acacgatggg
      481 aagggccgtg ggagccgctt ctaactttct gccccggggg gcccacgaac cacagttgga
      541 agggggcaca tttcagccac agtttctttg gtttgtatcg agatcaccct cagctctttt
      601 ccaagaaata cggagcctat ttggtccact ccagagattt tatttccgca caagacagac
      661 caagagcccg gaatgttgga gccttcacgg attttgtgca gaaagtcaag cttcagaaag
      721 ttcaaggcca gccacgccag gactctcatt ttccgtcttc cggttccccc acccttgtca
      781 cggggacaag cctaaggccc gggaagcagg cgtccccggg ggcatctctg cgctgctgca
      841 cggcccggcc cgccccctct ggatcgcctg tcaggtccag caggggaccc gtgtcgctcc
      901 gatccaggcc ttcagcgccg cccacccgga cgggctccgg ctccgcaggg tcacagccgt
      961 gctgcagggg acacccgtgt gccccacctg ctgtgggccg gagcttcggg gtcatcgcag
     1021 gagtggaagc actgggtcca ggcctctgtg gatcttcttc tcccggctga caccaggggg
     1081 ctcaggtcca cgtggcttgg ccccctgccc tgccgggccc gagcagacgc tggggtcccg
     1141 gcaccgcccc tcccgtctct tccgaccgtg tggccactcg tgcttgccag ctgtgtcgcc
     1201 ggtgcaggct catcgtgagg gctccctgtt cccgttgatc tgtttgcggt gtggggtgtc
     1261 cctcttcttc ctgatgattc tgtgcctctt gaagcccggt tgcccgtcga gcacctcgga
     1321 gtcggtgtct ccccagccgt cacccccagg ctctctgcgc ctgtgcaggt cacgcagggg
     1381 agggcctcat gagagcgtgt tctccagccc aacaccgcgg ttctgtttag tctgatgcat
     1441 ctaacgtaac tactcatctg ggtggacgca ggcctgatcc gctcttgttc atcgtgccca
     1501 tgccgcttct gagtcggtct gttgttctca tgctccattg taatttctcc tttttaactg
     1561 tgcactcagc tttcaggggc ggctctggga atcgcgttct tcatccttcg cccgtcagtc
     1621 caggttattc cgtatcgtgt gacgtgagag cgttgattgt cctccagttt ctataacgtg
     1681 tattgattga agttcccact ttgctcttgt tgcaatttca ccatttatat tttcaaaaaa
     1741 tgtctttcat ctacacttca tcattattaa tgcatgcttt ttaaaaatat attttggcaa
     1801 acctcttaat gtctagttgt tttggttggt tctatagttt atttgtatct cctcaagatt
     1861 tgtttatatc attcatcttt ccaagcagta ggggtttttg gttatttttt tttccaataa
     1921 tctatttatt tgtccttata tttatgtcct tccttcttgt tactttgagt ttatttagtt
     1981 ttcctctttg taaattttta tattgaatat tgttttcctt taagtattgc tttaactttg
     2041 tcccacaaat tctgacattt ttgttttcat tttcattcag ttctaaatat ttcttaaccc
     2101 ccttctgatt tacttttaaa tgcaagcgtt atttagtaat gttattttct ttccaaaaat
     2161 gtggtattta gaaaaaaaag tctatcgttt tggtatttgt ttggaaatgt attgtcctgt
     2221 tctagaaaga acatgaccac tttgttactt tggaatttat tgtgtttctt tctgtccagc
     2281 agctgcccgg gcgcttttgt ctcaggcaca gcccccagtg cctgccgctg actggacatc
     2341 gctgggccat ggtgctttcg attccctgat gaaggaagca aggctgtggt cctggtctga
     2401 gacatctggt aagtggtgga acctgtgtgt caacaccagg tgttcttccc tactgggtgc
     2461 cttggttggg atttttcttt tggggagagg ggaggcatag gacttagtca tctggttttg
     2521 agcagagcac cactttaact aggttttccc ttctgggtca aggagtgtct cggtctcctg
     2581 gcactgccta cagtcgcccc ctattagacc acggctcatc tgcacgccgg ttggaacagc
     2641 agggccctgg taacctgaac gtggtgtaga cactcgtaga aactgcttaa tttgctcttc
     2701 agcctgactc agagccacct acaagtttgt ccggaagtga gctgtgtgaa tgttcatata
     2761 atccctcatc cagtctcact ggtctccccc tgataatctc aaaaggaaac aaatgttttc
     2821 caaaacaggt ggatctgagg ttgaggcgaa ccaatggaag ggcctcaggc cagaagcttc
     2881 taaatatcca taagcattcc actccatctg atcctatgga ctgctttcgc tagctgcata
     2941 cacaagaaaa ttttggaatg tcagaagaac ccaaatatgg ccattttagg ttgtgatctc
     3001 ctttagtgtg gtttctccaa tcacgtgagt atttgcaggt ataaattcca tacgtattgt
     3061 acatgaacct ggcctgggtg ttagttggag gctagcaatc tgtcctttta gttttgaaag
     3121 ctttgtttcc cattccaagg tccatctgtt gaggtaagaa tcattactga tgatcccgtg
     3181 gtgggccagt gtgctggctg tgagcctgat tccttgggat ttttagcccg gagccagtgc
     3241 agcgctctta caggtcctac tttctgtagc ctaagaccac agtgggtgct tgcagcaccg
     3301 agtggccggc tcttatgtgt ccccagctga gatgagtggg tttcccgcta cagatggcag
     3361 cccagtatga ggacttacct ccaccactcc cacaagttcc ccagttgcct gagaaagcca
     3421 gtgctgtcag gaaggagatg gctcataagg gctttcagct ccaaagaagg gacatcttca
     3481 tttttattcc aataatctgt taaagtagcc aaataaagga aaaatgacat gtcagtctcc
     3541 cacctaattt cccagtccaa ccaaactcag tgtctttcaa ctgagtaaaa tctccccaac
     3601 atccctcaac tgggataacc caggtacttc ttcttgaaat taagttcaag gaaaacctcc
     3661 tcccctccag tgagggattt atccaccacc aaatacaata ggatcagcca gtaacaggag
     3721 atctgagacc aggggggctc accaaggaga cggctgggca caagaggcct ctgctggcca
     3781 gtccctgcag ggctcaggca gaggagaagc ctgctccacg ttcccttcag gtcaccaaag
     3841 ccgctgactg aaggaaaaca tacaacccaa aagctgcaag ttaaagtttt aagcccagga
     3901 gacagcctct cagcaggtaa gggaggtacc aagatgcatc gagtttatgc tggaagacaa
     3961 gaatttagtc aaagattact gcttatcaca cacaccaaag ccccagacag ttcaggttaa
     4021 taattttagt gcttttgtat gtatgggaag atgaagaatc tggcctcact gaaattattc
     4081 tttagatgtg cacttaaacg atctagggct ggtacccaga gcacagaatg tttcctggat
     4141 ccccgcaggg cacgccctca ggacagctgc agcggctggt ggccagattg tgcccagtat
     4201 ctttgtttac tggaatggca ggtgacactc ctgtccacac tacatacatc atattgctgc
     4261 tgcttcgtta tcaatgcctg aaccattatt cctgtaaata aaaatgaatt ttcattgttt
     4321 ttgatgccta gtgttagtaa tatatggaac ctctcagtgt tttatatcat aatattgaca
     4381 tactgacaga tgactcacct tgtaaacgta catcatcgat aaatgcagtg ttataagtat
     4441 tccttatgac gttaacgttt tctctagctt acttctctgt gacgatgcag tgaatacaca
     4501 catagaaaat atgttcattg actacattac cggtaaggct tctggtcaat agtatagtag
     4561 ttgagtttag gggagtcaaa agttacacgc aggagagaga gttcccaaga tggcagaggg
     4621 gagaccctga gctcgcctgc tctcaagggc aaaccagaat tacagtgtgc gaagaatcta
     4681 ttgttgacaa agactcgaac ctaccagaaa agatctgcaa gtgataaaga aggaagcaca
     4741 agctgggtag gaggggccga gtcacagcac tgtcgagacc cccagaggag ggagaacaag
     4801 gtgggagcgg agggcgtgga gctcaccccc tcccacagac gtcaaatgca tctacacgtg
     4861 gagcagttct caggggaact acgtggaaac tggcagagct gctgtacaac caaggctgca
     4921 ggaagatacg taaccagcga ggacaggaag aaaagcattg gttcgggacc cctgcccctg
     4981 ggagggtact aagaagaggg agattgtgca ggtggacacg tgcccttggg agtgagccag
     5041 gcaagccaga ctgggcctcc caggcctggg gccctgtgta gtggacacaa gcctcccttg
     5101 gctggttgga gaagcctagg ctccgttcac gaggactgca taggtgctgg ctcgccactg
     5161 gacaggctgg agagaggtct gacctagtgg ctcccagcct gccaggctcc ccagtccgag
     5221 tgaggagaca tgccatgcac tccatgccac acctcagcag tgtttctagg gaagccaggc
     5281 cctgggagga gactcaatcg agggccacag gagtggccta ggggcccggg gtgaggtcca
     5341 gatggggtgg tggcagccac tgtcggtgca ccacacaggc agcccagacc ctctaacaac
     5401 agtggggctg ctggaacccc tgcagcacac gatcccccac tcccagctga gctaatctgc
     5461 tcacccaccc actccacgcc acagccttgc actaggtctc ggacagccac aacgggaaag
     5521 acgcgacact gggctgcatc caagcggaag ggcagacacc agcacagacc tctgtgagca
     5581 catgagcccc acttgctcca gcaatcccct ccttcggagc aacggcccca atgcagaaag
     5641 aaggaaaaaa cacttcaagg aacagagcca tccactccct tcgagatcac agcaggtaac
     5701 tgtttcacct aaattcagac acagacagaa atttaagaaa aacgacaacg caggggaact
     5761 actctcaact gaaagagagc aaagccctga aaaaataatg aaacaaaggt aatgagtcta
     5821 ccagacaatg aattaaaaat gctaactgaa ttaagaattg atctaagcac agattttaat
     5881 aaggaactag aaactataaa gacagcctaa tcaaaaagat aatttaaaaa aacaggtaat
     5941 taaatctgag attaaaaagc gctctagaag caatgaatag cagactgaat gacagaacaa
     6001 cacataagtg aactgagaga gagaatagaa atcacccaat cagaacagca gacagaaaga
     6061 cacatgaaaa aaagaaagct acatacagga tctatgggat aatataaaat tgtgtcagca
     6121 tttccataat agggattctc cacaaggaga aggaggggga tcaaatgtat tttgaagaaa
     6181 ttatggctga aaacttccca aacctaaaaa aggaaacaga tacccaagta caggaagcgc
     6241 agagggtccc aaacaacatg aacacaaaga gactcacact gagacatacc acaattaaaa
     6301 cagcaaaagt tatagaggat tctaaaggca acaacaggaa aacagagtta tatacaagag
     6361 aatccccata acactatcag ctgattcccc tgtggaaagt ttgcaggcct aaagggggca
     6421 gcatataaac agagttctca aagggaaaac cctgccacct cagatactgc acccagtaag
     6481 atcatcatat gagacagaag gataaagaat ttctcaggca gtcaaaaccc agaagaattc
     6541 agtaatacta aaactattct agaagtgttg aagggtcttt ttgaaacaga gaagtaacgg
     6601 gaatctgtag gaaagggaaa agcccaatag gaaaggcaaa tatatactaa ggacttaaga
     6661 tcactgaaac cagtatgtag actgaaacac aaaacaagac tgtaaaagca attataacta
     6721 acagtaaagg gataaacatg aagatgtaaa ctataatatc aaatatacac tgtacgaggg
     6781 gagtaaaaaa aaatatttta ggacatgtct gaacttaaat atttgactat cagtttaaag
     6841 caagtacata taattatggg tcaacatatg agccccatgg taaccacaaa tcaaagacct
     6901 accacagata cacaaaaacc aaaaagaaag gaaaccaagc atactaccaa agacaaatca
     6961 aaccacaaca tgagaaacaa gaaacagaga agaaactata agaagtggga aacagaatac
     7021 aaatagcaat aggtgtgtac ttaccattaa tgactttaaa tgtcagtagt ctaaatgctc
     7081 caatcagcag acacggggtg gatttttcaa agtgtgcatt cttctctgag ttggaactcc
     7141 tccacaactg actgtcccta aggggctgat gggctgcctg ggcctgggag gaaaggattc
     7201 aaaccttcca aaaggtgagc tctgcattgg ccaaaaatgt taaaggtctg atttcctctc
     7261 ctacaagtgt gaggacataa atcggtttct gggctggaga aaactttaga taaactagag
     7321 gcaaaaaggg gataaagctc tccagcctct tcaacttggt ctttgctgct gcagcctctc
     7381 ctaggattcc caccaaaatc acagctgctg aagaagcact gaccaaaaaa aatggcactg
     7441 agattgcttc aggatggccg agcacaggga cgctccgcac cagaatcaca actgacggcc
     7501 caacaggcat ccacagggag acgctgggac tcgccacaag acaccccaca cccaagacaa
     7561 aggagaagcc acgatgagac aggaggaggc gcgcaatcac agtacaatca aatcccgtaa
     7621 ccgctgggtg ggtgactcac agactgcaca acacttatac cacagaagcc cacccactgg
     7681 cgtgaaggtt ctgagcccca cgtcaggctt cccaacctgg gggtccggca acgggaggag
     7741 gaattcccag agaatcagac tttgaagcct agtgggattt gattgcagga ctttgacagg
     7801 tctagagaaa acggagactc cattcttgga gggcacacac aaagtagtgt gtgcatcagg
     7861 acccagggga aggagcagtg accccacagg agactgaacc agacctacct gctggtgttg
     7921 gagggtctcc tgcagaggcg gggggtggct ctgtttcacc gtggggacaa ggacactggc
     7981 aacagaagtt ctgggaagta ctccttggca tgagccctcc cagagtccac cattagctcc
     8041 accaaagagc ccaggtacac tccagtgttg ggtcgcctca ggccaaccaa ccaacaggga
     8101 gggaacccag ccccacccat cagcaaacaa gcagactaaa gttttactga gctctgccca
     8161 ccagagcaac acccagctct acccaccacc agtccctccc atcaggaaac ttgcagaagc
     8221 ctcttagata gcctcatcca ccagagggca gacagcagaa gcaagaagaa ctacaatccc
     8281 gcagcctgtg gaatgaaaac cacattcata gaaagataga caagatgaaa agacagaggg
     8341 ctatgtacca gatgaaggaa caggagaaaa ccccagaaaa acaactaatg aagtggagat
     8401 aggcaacctt ccagaaaaag aattcagaat aatgatagtg aagatgatcc aggacctcgg
     8461 aaaaagaatg gaggcaaaga tcgagaagat gcaagaaatg tttaacaaag gcctagaaga
     8521 attaaagaac taacaaacag agatgaacaa tacaataact gaagtgaaaa ctacactaaa
     8581 aggaaaaact acactaaaag gaatcaacag cagaataact gaggcagaag aacagataag
     8641 tgacctggag gacagaatgg tggaattcac tgctgca
//
LOCUS       XR_004347820            8568 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746650
            (LOC116746650), transcript variant X5, misc_RNA.
ACCESSION   XR_004347820
VERSION     XR_004347820.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8568
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8568
                     /gene="LOC116746650"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, and 88%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746650"
     misc_RNA        1..8568
                     /gene="LOC116746650"
                     /product="uncharacterized LOC116746650, transcript variant
                     X5"
                     /db_xref="GeneID:116746650"
ORIGIN      
        1 ctttgcgacg gagttcccca cgtggccggc tggagccccg cgctgggggc agcggccacg
       61 ggaggagggg actggatgcc aggtgagcca gcgtccccaa aggtcagact cgtttctagt
      121 tgtaagagtg aggttgacac ccaaaataaa ccccgagtga tgcccacccc ttatggatgc
      181 atgtggatgc tttcagttta cctgtatctt tactaaactt ctgctctaat gggagagttt
      241 attaattcaa cgtttctctt tttaaataaa tcttcccgtt tttcagtaac tagactatac
      301 ggtacacatt gtcttgccag gtcatgttta gtgaagtgga aatctcagaa atgttttctt
      361 cctctgagtg ctctggagcg gaccctgccc gtccggggcc tgcagctccc cgcagcccgg
      421 ccgagcccag ctacgcagag caaggaagct gcaccgtgac accccgtccc acacgatggg
      481 aagggccgtg ggagccgctt ctaactttct gccccggggg gcccacgaac cacagttgga
      541 agggggcaca tttcagccac agtttctttg gtttgtatcg agatcaccct cagctctttt
      601 ccaagaaata cggagcctat ttggtccact ccagagattt tatttccgca caagacagac
      661 caagagcccg gaatgttgga gccttcacgg attttgtgca gaaagtcaag cttcagaaag
      721 ttcaaggcca gccacgccag gactctcatt ttccgtcttc cggttccccc acccttgtca
      781 cggggacaag cctaaggccc gggaagcagg cgtccccggg ggcatctctg cgctgctgca
      841 cggcccggcc cgccccctct ggatcgcctg tcaggtccag caggggaccc gtgtcgctcc
      901 gatccaggcc ttcagcgccg cccacccgga cgggctccgg ctccgcaggg tcacagccgt
      961 gctgcagggg acacccgtgt gccccacctg ctgtgggccg gagcttcggg gtcatcgcag
     1021 gagtggaagc actgggtcca ggcctctgtg gatcttcttc tcccggctga caccaggggg
     1081 ctcaggtcca cgtggcttgg ccccctgccc tgccgggccc gagcagacgc tggggtcccg
     1141 gcaccgcccc tcccgtctct tccgaccgtg tggccactcg tgcttgccag ctgtgtcgcc
     1201 ggtgcaggct catcgtgagg gctccctgtt cccgttgatc tgtttgcggt gtggggtgtc
     1261 cctcttcttc ctgatgattc tgtgcctctt gaagcccggt tgcccgtcga gcacctcgga
     1321 gtcggtgtct ccccagccgt cacccccagg ctctctgcgc ctgtgcaggt cacgcagggg
     1381 agggcctcat gagagcgtgt tctccagccc aacaccgcgg ttctgtttag tctgatgcat
     1441 ctaacgtaac tactcatctg ggtggacgca ggcctgatcc gctcttgttc atcgtgccca
     1501 tgccgcttct gagtcggtct gttgttctca tgctccattg taatttctcc tttttaactg
     1561 tgcactcagc tttcaggggc ggctctggga atcgcgttct tcatccttcg cccgtcagtc
     1621 caggttattc cgtatcgtgt gacgtgagag cgttgattgt cctccagttt ctataacgtg
     1681 tattgattga agttcccact ttgctcttgt tgcaatttca ccatttatat tttcaaaaaa
     1741 tgtctttcat ctacacttca tcattattaa tgcatgcttt ttaaaaatat attttggcaa
     1801 acctcttaat gtctagttgt tttggttggt tctatagttt atttgtatct cctcaagatt
     1861 tgtttatatc attcatcttt ccaagcagta ggggtttttg gttatttttt tttccaataa
     1921 tctatttatt tgtccttata tttatgtcct tccttcttgt tactttgagt ttatttagtt
     1981 ttcctctttg taaattttta tattgaatat tgttttcctt taagtattgc tttaactttg
     2041 tcccacaaat tctgacattt ttgttttcat tttcattcag ttctaaatat ttcttaaccc
     2101 ccttctgatt tacttttaaa tgcaagcgtt atttagtaat gttattttct ttccaaaaat
     2161 gtggtattta gaaaaaaaag tctatcgttt tggtatttgt ttggaaatgt attgtcctgt
     2221 tctagaaaga acatgaccac tttgttactt tggaatttat tgtgtttctt tctgtccagc
     2281 agctgcccgg gcgcttttgt ctcaggcaca gcccccagtg cctgccgctg actggacatc
     2341 gctgggccat ggtgctttcg attccctgat gaaggaagca aggctgtggt cctggtctga
     2401 gacatctggt aagtggtgga acctgtgtgt caacaccagg tgttcttccc tactgggtgc
     2461 cttggttggg atttttcttt tggggagagg ggaggcatag gacttagtca tctggttttg
     2521 agcagagcac cactttaact aggttttccc ttctgggtca aggagtgtct cggtctcctg
     2581 gcactgccta cagtcgcccc ctattagacc acggctcatc tgcacgccgg ttggaacagc
     2641 aggttcatat aatccctcat ccagtctcac tggtctcccc ctgataatct caaaaggaaa
     2701 caaatgtttt ccaaaacagg tggatctgag gttgaggcga accaatggaa gggcctcagg
     2761 ccagaagctt ctaaatatcc ataagcattc cactccatct gatcctatgg actgctttcg
     2821 ctagctgcat acacaagaaa attttggaat gtcagaagaa cccaaatatg gccattttag
     2881 gttgtgatct cctttagtgt ggtttctcca atcacgtgag tatttgcagg tataaattcc
     2941 atacgtattg tacatgaacc tggcctgggt gttagttgga ggctagcaat ctgtcctttt
     3001 agttttgaaa gctttgtttc ccattccaag gtccatctgt tgaggtaaga atcattactg
     3061 atgatcccgt ggtgggccag tgtgctggct gtgagcctga ttccttggga tttttagccc
     3121 ggagccagtg cagcgctctt acaggtccta ctttctgtag cctaagacca cagtgggtgc
     3181 ttgcagcacc gagtggccgg ctcttatgtg tccccagctg agatgagtgg gtttcccgct
     3241 acagatggca gcccagtatg aggacttacc tccaccactc ccacaagttc cccagttgcc
     3301 tgagaaagcc agtgctgtca ggaaggagat ggctcataag ggctttcagc tccaaagaag
     3361 ggacatcttc atttttattc caataatctg ttaaagtagc caaataaagg aaaaatgaca
     3421 tgtcagtctc ccacctaatt tcccagtcca accaaactca gtgtctttca actgagtaaa
     3481 atctccccaa catccctcaa ctgggataac ccaggtactt cttcttgaaa ttaagttcaa
     3541 ggaaaacctc ctcccctcca gtgagggatt tatccaccac caaatacaat aggatcagcc
     3601 agtaacagga gatctgagac caggggggct caccaaggag acggctgggc acaagaggcc
     3661 tctgctggcc agtccctgca gggctcaggc agaggagaag cctgctccac gttcccttca
     3721 ggtcaccaaa gccgctgact gaaggaaaac atacaaccca aaagctgcaa gttaaagttt
     3781 taagcccagg agacagcctc tcagcaggta agggaggtac caagatgcat cgagtttatg
     3841 ctggaagaca agaatttagt caaagattac tgcttatcac acacaccaaa gccccagaca
     3901 gttcaggtta ataattttag tgcttttgta tgtatgggaa gatgaagaat ctggcctcac
     3961 tgaaattatt ctttagatgt gcacttaaac gatctagggc tggtacccag agcacagaat
     4021 gtttcctgga tccccgcagg gcacgccctc aggacagctg cagcggctgg tggccagatt
     4081 gtgcccagta tctttgttta ctggaatggc aggtgacact cctgtccaca ctacatacat
     4141 catattgctg ctgcttcgtt atcaatgcct gaaccattat tcctgtaaat aaaaatgaat
     4201 tttcattgtt tttgatgcct agtgttagta atatatggaa cctctcagtg ttttatatca
     4261 taatattgac atactgacag atgactcacc ttgtaaacgt acatcatcga taaatgcagt
     4321 gttataagta ttccttatga cgttaacgtt ttctctagct tacttctctg tgacgatgca
     4381 gtgaatacac acatagaaaa tatgttcatt gactacatta ccggtaaggc ttctggtcaa
     4441 tagtatagta gttgagttta ggggagtcaa aagttacacg caggagagag agttcccaag
     4501 atggcagagg ggagaccctg agctcgcctg ctctcaaggg caaaccagaa ttacagtgtg
     4561 cgaagaatct attgttgaca aagactcgaa cctaccagaa aagatctgca agtgataaag
     4621 aaggaagcac aagctgggta ggaggggccg agtcacagca ctgtcgagac ccccagagga
     4681 gggagaacaa ggtgggagcg gagggcgtgg agctcacccc ctcccacaga cgtcaaatgc
     4741 atctacacgt ggagcagttc tcaggggaac tacgtggaaa ctggcagagc tgctgtacaa
     4801 ccaaggctgc aggaagatac gtaaccagcg aggacaggaa gaaaagcatt ggttcgggac
     4861 ccctgcccct gggagggtac taagaagagg gagattgtgc aggtggacac gtgcccttgg
     4921 gagtgagcca ggcaagccag actgggcctc ccaggcctgg ggccctgtgt agtggacaca
     4981 agcctccctt ggctggttgg agaagcctag gctccgttca cgaggactgc ataggtgctg
     5041 gctcgccact ggacaggctg gagagaggtc tgacctagtg gctcccagcc tgccaggctc
     5101 cccagtccga gtgaggagac atgccatgca ctccatgcca cacctcagca gtgtttctag
     5161 ggaagccagg ccctgggagg agactcaatc gagggccaca ggagtggcct aggggcccgg
     5221 ggtgaggtcc agatggggtg gtggcagcca ctgtcggtgc accacacagg cagcccagac
     5281 cctctaacaa cagtggggct gctggaaccc ctgcagcaca cgatccccca ctcccagctg
     5341 agctaatctg ctcacccacc cactccacgc cacagccttg cactaggtct cggacagcca
     5401 caacgggaaa gacgcgacac tgggctgcat ccaagcggaa gggcagacac cagcacagac
     5461 ctctgtgagc acatgagccc cacttgctcc agcaatcccc tccttcggag caacggcccc
     5521 aatgcagaaa gaaggaaaaa acacttcaag gaacagagcc atccactccc ttcgagatca
     5581 cagcaggtaa ctgtttcacc taaattcaga cacagacaga aatttaagaa aaacgacaac
     5641 gcaggggaac tactctcaac tgaaagagag caaagccctg aaaaaataat gaaacaaagg
     5701 taatgagtct accagacaat gaattaaaaa tgctaactga attaagaatt gatctaagca
     5761 cagattttaa taaggaacta gaaactataa agacagccta atcaaaaaga taatttaaaa
     5821 aaacaggtaa ttaaatctga gattaaaaag cgctctagaa gcaatgaata gcagactgaa
     5881 tgacagaaca acacataagt gaactgagag agagaataga aatcacccaa tcagaacagc
     5941 agacagaaag acacatgaaa aaaagaaagc tacatacagg atctatggga taatataaaa
     6001 ttgtgtcagc atttccataa tagggattct ccacaaggag aaggaggggg atcaaatgta
     6061 ttttgaagaa attatggctg aaaacttccc aaacctaaaa aaggaaacag atacccaagt
     6121 acaggaagcg cagagggtcc caaacaacat gaacacaaag agactcacac tgagacatac
     6181 cacaattaaa acagcaaaag ttatagagga ttctaaaggc aacaacagga aaacagagtt
     6241 atatacaaga gaatccccat aacactatca gctgattccc ctgtggaaag tttgcaggcc
     6301 taaagggggc agcatataaa cagagttctc aaagggaaaa ccctgccacc tcagatactg
     6361 cacccagtaa gatcatcata tgagacagaa ggataaagaa tttctcaggc agtcaaaacc
     6421 cagaagaatt cagtaatact aaaactattc tagaagtgtt gaagggtctt tttgaaacag
     6481 agaagtaacg ggaatctgta ggaaagggaa aagcccaata ggaaaggcaa atatatacta
     6541 aggacttaag atcactgaaa ccagtatgta gactgaaaca caaaacaaga ctgtaaaagc
     6601 aattataact aacagtaaag ggataaacat gaagatgtaa actataatat caaatataca
     6661 ctgtacgagg ggagtaaaaa aaaatatttt aggacatgtc tgaacttaaa tatttgacta
     6721 tcagtttaaa gcaagtacat ataattatgg gtcaacatat gagccccatg gtaaccacaa
     6781 atcaaagacc taccacagat acacaaaaac caaaaagaaa ggaaaccaag catactacca
     6841 aagacaaatc aaaccacaac atgagaaaca agaaacagag aagaaactat aagaagtggg
     6901 aaacagaata caaatagcaa taggtgtgta cttaccatta atgactttaa atgtcagtag
     6961 tctaaatgct ccaatcagca gacacggggt ggatttttca aagtgtgcat tcttctctga
     7021 gttggaactc ctccacaact gactgtccct aaggggctga tgggctgcct gggcctggga
     7081 ggaaaggatt caaaccttcc aaaaggtgag ctctgcattg gccaaaaatg ttaaaggtct
     7141 gatttcctct cctacaagtg tgaggacata aatcggtttc tgggctggag aaaactttag
     7201 ataaactaga ggcaaaaagg ggataaagct ctccagcctc ttcaacttgg tctttgctgc
     7261 tgcagcctct cctaggattc ccaccaaaat cacagctgct gaagaagcac tgaccaaaaa
     7321 aaatggcact gagattgctt caggatggcc gagcacaggg acgctccgca ccagaatcac
     7381 aactgacggc ccaacaggca tccacaggga gacgctggga ctcgccacaa gacaccccac
     7441 acccaagaca aaggagaagc cacgatgaga caggaggagg cgcgcaatca cagtacaatc
     7501 aaatcccgta accgctgggt gggtgactca cagactgcac aacacttata ccacagaagc
     7561 ccacccactg gcgtgaaggt tctgagcccc acgtcaggct tcccaacctg ggggtccggc
     7621 aacgggagga ggaattccca gagaatcaga ctttgaagcc tagtgggatt tgattgcagg
     7681 actttgacag gtctagagaa aacggagact ccattcttgg agggcacaca caaagtagtg
     7741 tgtgcatcag gacccagggg aaggagcagt gaccccacag gagactgaac cagacctacc
     7801 tgctggtgtt ggagggtctc ctgcagaggc ggggggtggc tctgtttcac cgtggggaca
     7861 aggacactgg caacagaagt tctgggaagt actccttggc atgagccctc ccagagtcca
     7921 ccattagctc caccaaagag cccaggtaca ctccagtgtt gggtcgcctc aggccaacca
     7981 accaacaggg agggaaccca gccccaccca tcagcaaaca agcagactaa agttttactg
     8041 agctctgccc accagagcaa cacccagctc tacccaccac cagtccctcc catcaggaaa
     8101 cttgcagaag cctcttagat agcctcatcc accagagggc agacagcaga agcaagaaga
     8161 actacaatcc cgcagcctgt ggaatgaaaa ccacattcat agaaagatag acaagatgaa
     8221 aagacagagg gctatgtacc agatgaagga acaggagaaa accccagaaa aacaactaat
     8281 gaagtggaga taggcaacct tccagaaaaa gaattcagaa taatgatagt gaagatgatc
     8341 caggacctcg gaaaaagaat ggaggcaaag atcgagaaga tgcaagaaat gtttaacaaa
     8401 ggcctagaag aattaaagaa ctaacaaaca gagatgaaca atacaataac tgaagtgaaa
     8461 actacactaa aaggaaaaac tacactaaaa ggaatcaaca gcagaataac tgaggcagaa
     8521 gaacagataa gtgacctgga ggacagaatg gtggaattca ctgctgca
//
LOCUS       XR_004347821            7553 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746650
            (LOC116746650), transcript variant X6, misc_RNA.
ACCESSION   XR_004347821
VERSION     XR_004347821.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7553
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7553
                     /gene="LOC116746650"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, and 87% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746650"
     misc_RNA        1..7553
                     /gene="LOC116746650"
                     /product="uncharacterized LOC116746650, transcript variant
                     X6"
                     /db_xref="GeneID:116746650"
ORIGIN      
        1 ctttgcgacg gagttcccca cgtggccggc tggagccccg cgctgggggc agcggccacg
       61 ggaggagggg actggatgcc aggtgagcca gcgtccccaa aggtcagact cgtttctagt
      121 tgtaagagtg aggttgacac ccaaaataaa ccccgagtga tgcccacccc ttatggatgc
      181 atgtggatgc tttcagttta cctgtatctt tactaaactt ctgctctaat gggagagttt
      241 attaattcaa cgtttctctt tttaaataaa tcttcccgtt tttcagtaac tagactatac
      301 ggtacacatt gtcttgccag gtcatgttta gtgaagtgga aatctcagaa atgttttctt
      361 cctctgagtg ctctggagcg gaccctgccc gtccggggcc tgcagctccc cgcagcccgg
      421 ccgagcccag ctacgcagag caaggaagct gcaccgtgac accccgtccc acacgatggg
      481 aagggccgtg ggagccgctt ctaactttct gccccggggg gcccacgaac cacagttgga
      541 agggggcaca tttcagccac agtttctttg gtttgtatcg agatcaccct cagctctttt
      601 ccaagaaata cggagcctat ttggtccact ccagagattt tatttccgca caagacagac
      661 caagagcccg gaatgttgga gccttcacgg attttgtgca gaaagtcaag cttcagaaag
      721 ttcaaggcca gccacgccag gactctcatt ttccgtcttc cggttccccc acccttgtca
      781 cggggacaag cctaaggccc gggaagcagg cgtccccggg ggcatctctg cgctgctgca
      841 cggcccggcc cgccccctct ggatcgcctg tcaggtccag caggggaccc gtgtcgctcc
      901 gatccaggcc ttcagcgccg cccacccgga cgggctccgg ctccgcaggg tcacagccgt
      961 gctgcagggg acacccgtgt gccccacctg ctgtgggccg gagcttcggg gtcatcgcag
     1021 gagtggaagc actgggtcca ggcctctgtg gatcttcttc tcccggctga caccaggggg
     1081 ctcaggtcca cgtggcttgg ccccctgccc tgccgggccc gagcagacgc tggggtcccg
     1141 gcaccgcccc tcccgtctct tccgaccgtg tggccactcg tgcttgccag ctgtgtcgcc
     1201 ggtgcaggct catcgtgagg gctccctgtt cccgttgatc tgtttgcggt gtggggtgtc
     1261 cctcttcttc ctgatgattc tgtgcctctt gaagcccggt tgcccgtcga gcacctcgga
     1321 gtcggtgtct ccccagccgt cacccccagg ctctctgcgc ctgtgcaggt cacgcagggg
     1381 agggcctcat gagagcgtgt tctccagccc aacaccgcgg ttctgtttag tctgatgcat
     1441 ctaacgtaac tactcatctg ggtggacgca ggcctgatcc gctcttgttc atcgtgccca
     1501 tgccgcttct gagtcggtct gttgttctca tgctccattg taatttctcc tttttaactg
     1561 tgcactcagc tttcaggggc ggctctggga atcgcgttct tcatccttcg cccgtcagtc
     1621 caggttattc cgtatcgtgt gacgtgagag cgttgattgt cctccagttt ctataacgtg
     1681 tattgattga agttcccact ttgctcttgt tgcaatttca ccatttatat tttcaaaaaa
     1741 tgtctttcat ctacacttca tcattattaa tgcatgcttt ttaaaaatat attttggcaa
     1801 acctcttaat gtctagttgt tttggttggt tctatagttt atttgtatct cctcaagatt
     1861 tgtttatatc attcatcttt ccaagcagta ggggtttttg gttatttttt tttccaataa
     1921 tctatttatt tgtccttata tttatgtcct tccttcttgt tactttgagt ttatttagtt
     1981 ttcctctttg taaattttta tattgaatat tgttttcctt taagtattgc tttaactttg
     2041 tcccacaaat tctgacattt ttgttttcat tttcattcag ttctaaatat ttcttaaccc
     2101 ccttctgatt tacttttaaa tgcaagcgtt atttagtaat gttattttct ttccaaaaat
     2161 gtggtattta gaaaaaaaag tctatcgttt tggtatttgt ttggaaatgt attgtcctgt
     2221 tctagaaaga acatgaccac tttgttactt tggaatttat tgtgtttctt tctgtccagc
     2281 agctgcccgg gcgcttttgt ctcaggcaca gcccccagtg cctgccgctg actggacatc
     2341 gctgggccat ggtgctttcg attccctgat gaaggaagca aggctgtggt cctggtctga
     2401 gacatctggt aagtggtgga acctgtgtgt caacaccagg tgttcttccc tactgggtgc
     2461 cttggttggg atttttcttt tggggagagg ggaggcatag gacttagtca tctggttttg
     2521 agcagagcac cactttaact aggttttccc ttctgggtca aggagtgtct cggtctcctg
     2581 gcactgccta cagtcgcccc ctattagacc acggctcatc tgcacgccgg ttggaacagc
     2641 agggccctgg taacctgaac gtggtgtaga cactcgtaga aactgcttaa tttgctcttc
     2701 agcctgactc agagccacct acaagtttgt ccggaagtga gctgtgtgaa tgttcatata
     2761 atccctcatc cagtctcact ggtctccccc tgataatctc aaaaggaaac aaatgttttc
     2821 caaaacaggt ggatctgagg ttgaggcgaa ccaatggaag ggcctcaggc cagaagcttc
     2881 taaatatcca taagcattcc actccatctg atcctatgga ctgctttcgc tagctgcata
     2941 cacaagaaaa ttttggaatg tcagaagaac ccaaatatgg ccattttagg ttgtgatctc
     3001 ctttagtgtg gtttctccaa tcacggcacg ccctcaggac agctgcagcg gctggtggcc
     3061 agattgtgcc cagtatcttt gtttactgga atggcaggtg acactcctgt ccacactaca
     3121 tacatcatat tgctgctgct tcgttatcaa tgcctgaacc attattcctg taaataaaaa
     3181 tgaattttca ttgtttttga tgcctagtgt tagtaatata tggaacctct cagtgtttta
     3241 tatcataata ttgacatact gacagatgac tcaccttgta aacgtacatc atcgataaat
     3301 gcagtgttat aagtattcct tatgacgtta acgttttctc tagcttactt ctctgtgacg
     3361 atgcagtgaa tacacacata gaaaatatgt tcattgacta cattaccggt aaggcttctg
     3421 gtcaatagta tagtagttga gtttagggga gtcaaaagtt acacgcagga gagagagttc
     3481 ccaagatggc agaggggaga ccctgagctc gcctgctctc aagggcaaac cagaattaca
     3541 gtgtgcgaag aatctattgt tgacaaagac tcgaacctac cagaaaagat ctgcaagtga
     3601 taaagaagga agcacaagct gggtaggagg ggccgagtca cagcactgtc gagaccccca
     3661 gaggagggag aacaaggtgg gagcggaggg cgtggagctc accccctccc acagacgtca
     3721 aatgcatcta cacgtggagc agttctcagg ggaactacgt ggaaactggc agagctgctg
     3781 tacaaccaag gctgcaggaa gatacgtaac cagcgaggac aggaagaaaa gcattggttc
     3841 gggacccctg cccctgggag ggtactaaga agagggagat tgtgcaggtg gacacgtgcc
     3901 cttgggagtg agccaggcaa gccagactgg gcctcccagg cctggggccc tgtgtagtgg
     3961 acacaagcct cccttggctg gttggagaag cctaggctcc gttcacgagg actgcatagg
     4021 tgctggctcg ccactggaca ggctggagag aggtctgacc tagtggctcc cagcctgcca
     4081 ggctccccag tccgagtgag gagacatgcc atgcactcca tgccacacct cagcagtgtt
     4141 tctagggaag ccaggccctg ggaggagact caatcgaggg ccacaggagt ggcctagggg
     4201 cccggggtga ggtccagatg gggtggtggc agccactgtc ggtgcaccac acaggcagcc
     4261 cagaccctct aacaacagtg gggctgctgg aacccctgca gcacacgatc ccccactccc
     4321 agctgagcta atctgctcac ccacccactc cacgccacag ccttgcacta ggtctcggac
     4381 agccacaacg ggaaagacgc gacactgggc tgcatccaag cggaagggca gacaccagca
     4441 cagacctctg tgagcacatg agccccactt gctccagcaa tcccctcctt cggagcaacg
     4501 gccccaatgc agaaagaagg aaaaaacact tcaaggaaca gagccatcca ctcccttcga
     4561 gatcacagca ggtaactgtt tcacctaaat tcagacacag acagaaattt aagaaaaacg
     4621 acaacgcagg ggaactactc tcaactgaaa gagagcaaag ccctgaaaaa ataatgaaac
     4681 aaaggtaatg agtctaccag acaatgaatt aaaaatgcta actgaattaa gaattgatct
     4741 aagcacagat tttaataagg aactagaaac tataaagaca gcctaatcaa aaagataatt
     4801 taaaaaaaca ggtaattaaa tctgagatta aaaagcgctc tagaagcaat gaatagcaga
     4861 ctgaatgaca gaacaacaca taagtgaact gagagagaga atagaaatca cccaatcaga
     4921 acagcagaca gaaagacaca tgaaaaaaag aaagctacat acaggatcta tgggataata
     4981 taaaattgtg tcagcatttc cataataggg attctccaca aggagaagga gggggatcaa
     5041 atgtattttg aagaaattat ggctgaaaac ttcccaaacc taaaaaagga aacagatacc
     5101 caagtacagg aagcgcagag ggtcccaaac aacatgaaca caaagagact cacactgaga
     5161 cataccacaa ttaaaacagc aaaagttata gaggattcta aaggcaacaa caggaaaaca
     5221 gagttatata caagagaatc cccataacac tatcagctga ttcccctgtg gaaagtttgc
     5281 aggcctaaag ggggcagcat ataaacagag ttctcaaagg gaaaaccctg ccacctcaga
     5341 tactgcaccc agtaagatca tcatatgaga cagaaggata aagaatttct caggcagtca
     5401 aaacccagaa gaattcagta atactaaaac tattctagaa gtgttgaagg gtctttttga
     5461 aacagagaag taacgggaat ctgtaggaaa gggaaaagcc caataggaaa ggcaaatata
     5521 tactaaggac ttaagatcac tgaaaccagt atgtagactg aaacacaaaa caagactgta
     5581 aaagcaatta taactaacag taaagggata aacatgaaga tgtaaactat aatatcaaat
     5641 atacactgta cgaggggagt aaaaaaaaat attttaggac atgtctgaac ttaaatattt
     5701 gactatcagt ttaaagcaag tacatataat tatgggtcaa catatgagcc ccatggtaac
     5761 cacaaatcaa agacctacca cagatacaca aaaaccaaaa agaaaggaaa ccaagcatac
     5821 taccaaagac aaatcaaacc acaacatgag aaacaagaaa cagagaagaa actataagaa
     5881 gtgggaaaca gaatacaaat agcaataggt gtgtacttac cattaatgac tttaaatgtc
     5941 agtagtctaa atgctccaat cagcagacac ggggtggatt tttcaaagtg tgcattcttc
     6001 tctgagttgg aactcctcca caactgactg tccctaaggg gctgatgggc tgcctgggcc
     6061 tgggaggaaa ggattcaaac cttccaaaag gtgagctctg cattggccaa aaatgttaaa
     6121 ggtctgattt cctctcctac aagtgtgagg acataaatcg gtttctgggc tggagaaaac
     6181 tttagataaa ctagaggcaa aaaggggata aagctctcca gcctcttcaa cttggtcttt
     6241 gctgctgcag cctctcctag gattcccacc aaaatcacag ctgctgaaga agcactgacc
     6301 aaaaaaaatg gcactgagat tgcttcagga tggccgagca cagggacgct ccgcaccaga
     6361 atcacaactg acggcccaac aggcatccac agggagacgc tgggactcgc cacaagacac
     6421 cccacaccca agacaaagga gaagccacga tgagacagga ggaggcgcgc aatcacagta
     6481 caatcaaatc ccgtaaccgc tgggtgggtg actcacagac tgcacaacac ttataccaca
     6541 gaagcccacc cactggcgtg aaggttctga gccccacgtc aggcttccca acctgggggt
     6601 ccggcaacgg gaggaggaat tcccagagaa tcagactttg aagcctagtg ggatttgatt
     6661 gcaggacttt gacaggtcta gagaaaacgg agactccatt cttggagggc acacacaaag
     6721 tagtgtgtgc atcaggaccc aggggaagga gcagtgaccc cacaggagac tgaaccagac
     6781 ctacctgctg gtgttggagg gtctcctgca gaggcggggg gtggctctgt ttcaccgtgg
     6841 ggacaaggac actggcaaca gaagttctgg gaagtactcc ttggcatgag ccctcccaga
     6901 gtccaccatt agctccacca aagagcccag gtacactcca gtgttgggtc gcctcaggcc
     6961 aaccaaccaa cagggaggga acccagcccc acccatcagc aaacaagcag actaaagttt
     7021 tactgagctc tgcccaccag agcaacaccc agctctaccc accaccagtc cctcccatca
     7081 ggaaacttgc agaagcctct tagatagcct catccaccag agggcagaca gcagaagcaa
     7141 gaagaactac aatcccgcag cctgtggaat gaaaaccaca ttcatagaaa gatagacaag
     7201 atgaaaagac agagggctat gtaccagatg aaggaacagg agaaaacccc agaaaaacaa
     7261 ctaatgaagt ggagataggc aaccttccag aaaaagaatt cagaataatg atagtgaaga
     7321 tgatccagga cctcggaaaa agaatggagg caaagatcga gaagatgcaa gaaatgttta
     7381 acaaaggcct agaagaatta aagaactaac aaacagagat gaacaataca ataactgaag
     7441 tgaaaactac actaaaagga aaaactacac taaaaggaat caacagcaga ataactgagg
     7501 cagaagaaca gataagtgac ctggaggaca gaatggtgga attcactgct gca
//
LOCUS       XM_032618179            1473 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746650
            (LOC116746650), transcript variant X7, mRNA.
ACCESSION   XM_032618179
VERSION     XM_032618179.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1473
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1473
                     /gene="LOC116746650"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746650"
     CDS             476..1318
                     /gene="LOC116746650"
                     /codon_start=1
                     /product="uncharacterized protein LOC116746650"
                     /protein_id="XP_032474070.1"
                     /db_xref="GeneID:116746650"
                     /translation="MGRAVGAASNFLPRGAHEPQLEGGTFQPQFLWFVSRSPSALFQE
                     IRSLFGPLQRFYFRTRQTKSPECWSLHGFCAESQASESSRPATPGLSFSVFRFPHPCH
                     GDKPKAREAGVPGGISALLHGPARPLWIACQVQQGTRVAPIQAFSAAHPDGLRLRRVT
                     AVLQGTPVCPTCCGPELRGHRRSGSTGSRPLWIFFSRLTPGGSAARALLSQAQPPVPA
                     ADWTSLGHGAFDSLMKEARLWSWSETSGVSRSPGTAYSRPLLDHGSSARRLEQQGPGN
                     LNVV"
ORIGIN      
        1 ctttgcgacg gagttcccca cgtggccggc tggagccccg cgctgggggc agcggccacg
       61 ggaggagggg actggatgcc aggtgagcca gcgtccccaa aggtcagact cgtttctagt
      121 tgtaagagtg aggttgacac ccaaaataaa ccccgagtga tgcccacccc ttatggatgc
      181 atgtggatgc tttcagttta cctgtatctt tactaaactt ctgctctaat gggagagttt
      241 attaattcaa cgtttctctt tttaaataaa tcttcccgtt tttcagtaac tagactatac
      301 ggtacacatt gtcttgccag gtcatgttta gtgaagtgga aatctcagaa atgttttctt
      361 cctctgagtg ctctggagcg gaccctgccc gtccggggcc tgcagctccc cgcagcccgg
      421 ccgagcccag ctacgcagag caaggaagct gcaccgtgac accccgtccc acacgatggg
      481 aagggccgtg ggagccgctt ctaactttct gccccggggg gcccacgaac cacagttgga
      541 agggggcaca tttcagccac agtttctttg gtttgtatcg agatcaccct cagctctttt
      601 ccaagaaata cggagcctat ttggtccact ccagagattt tatttccgca caagacagac
      661 caagagcccg gaatgttgga gccttcacgg attttgtgca gaaagtcaag cttcagaaag
      721 ttcaaggcca gccacgccag gactctcatt ttccgtcttc cggttccccc acccttgtca
      781 cggggacaag cctaaggccc gggaagcagg cgtccccggg ggcatctctg cgctgctgca
      841 cggcccggcc cgccccctct ggatcgcctg tcaggtccag caggggaccc gtgtcgctcc
      901 gatccaggcc ttcagcgccg cccacccgga cgggctccgg ctccgcaggg tcacagccgt
      961 gctgcagggg acacccgtgt gccccacctg ctgtgggccg gagcttcggg gtcatcgcag
     1021 gagtggaagc actgggtcca ggcctctgtg gatcttcttc tcccggctga caccaggggg
     1081 ctcagctgcc cgggcgcttt tgtctcaggc acagccccca gtgcctgccg ctgactggac
     1141 atcgctgggc catggtgctt tcgattccct gatgaaggaa gcaaggctgt ggtcctggtc
     1201 tgagacatct ggagtgtctc ggtctcctgg cactgcctac agtcgccccc tattagacca
     1261 cggctcatct gcacgccggt tggaacagca gggccctggt aacctgaacg tggtgtagac
     1321 actcgtagaa actgcttaat ttgctcttca gcctgactca gagccaccta caagtttgtc
     1381 cggaagtgag ctgtgtgaat gtgagtgaat gatatgcgct attgtgttat ttaaactgaa
     1441 ttggctattt gggtactgaa ggaactctca cct
//
LOCUS       XR_004347822            3541 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746652
            (LOC116746652), ncRNA.
ACCESSION   XR_004347822
VERSION     XR_004347822.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3541
                     /gene="LOC116746652"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746652"
     ncRNA           1..3541
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746652"
                     /product="uncharacterized LOC116746652"
                     /db_xref="GeneID:116746652"
ORIGIN      
        1 ccgagagcct gcccgttggc aaaaggaaag cccgctaata gctacacaga cggccgccat
       61 gcttctgggg gggaccatga cttggcctcc cagaaacctt actgacgtgg tccggtttca
      121 aggagaggca ccagaaaaca gacacctgga cacacaaggg aggcagcctg aactcacaca
      181 aagagctgtg gatacaccca gacgggaggc ctatccttcc ctttgaagct caatattcta
      241 ttttgcaata tattcacgag ttaacacact ggaacccagg tagacggtat tatggggtaa
      301 aaaactgttg aaaggctttt gtgagagctc gggaattatt caagatgtac cacttgtcca
      361 aaatataagc cagggaagcc gttacatagt tctcaaggga atctgccacg acctgcaggt
      421 cccgttgcga cttggcagac tgattttata caacgccccc ctctcaaggt tatcagtatg
      481 ttcttgttac gatttgtgtg ttttcacact gggttgaggc atcccatgct gaagggccac
      541 agcccaatct gtaggacatt ttattttacc aagagtgatg cccatttggg gagtcccctc
      601 agaaccacat agtgacagag gaactcattt tactggacaa acggttaaga tttggccaat
      661 tatgcagcat ttccattgtg cttatcacca ccagtcctct gggttagtag aaagaacaaa
      721 tggaacaatt aaaacccaac tggctaagat gatgaatgct tattccttac ctggcctgag
      781 gcccttccat tggttcgcct caacctcaga tccacctgtt ttggaaaaca tttgtttcct
      841 tttgagatta tcagggggag accagtgaga ctggatgagg gattatatga acctatagta
      901 atgaaaaggg atagattacg ttattgcaag ggtttaattg aattaacagg acgttataag
      961 tgttaatgca taagttaaag cataacttat cacagtacgc tttctgtaaa tgatgatcag
     1021 atgccctatg acctataacc aggagactct gtatactgga aaaggcatca tttaaaggac
     1081 tctctccaac ctcgatggaa agtccctatc aggttctttt aagtagctca tgcacagcaa
     1141 aatcgaaggt aactgactct tggattcata tttcccacct aaagaggcac cggtctggtc
     1201 tatagagagg actgctgacc tcaaactcac cttaaagcga tgctctgata ggaaagaaat
     1261 accaatgcca ggacgagaag acgacgacat caggagacag ctatcccaag gtgctggacc
     1321 tgaccgtatg attatttata acattttttg atttcttgga ctttatgcac atgaatcaaa
     1381 tgtttttctg tcatgggtac gatcctatgc aggttttaga agtcattgca gttgttgggt
     1441 ttgtggtcag ttacctacat ccactacttc tggttagtgg gtttctcctc tccaaggctc
     1501 tgattggata gcctgtagaa aattttagaa aaaagtagtt ctgtctgagc tgcaactgat
     1561 gctcctatgg gaacccctca cttggccagt caagcatcct tgctttgact ttggccataa
     1621 atgagttttc ccttaaagtt actcaagctc agtcagagca acaagctaaa tttcagtcaa
     1681 aaatgataac ttcctgacta ttattaggag ggaccccccc cccccctcag ttatatggct
     1741 aataccaggc tgtggtccct taaggcgccc ccctatgttg ggaacaatta aatcacacta
     1801 aagatattca gcctaattaa caccagaaaa ttaggctggg tgccttaatg aaaaatgtca
     1861 gtgtatcatc atttccctta aagatagtga ttgatatgga acagactggg tcaggcaccc
     1921 aggagtatgc tgggttgcac cttatggaac tcagtggttt tgtggcacca atctgcatcc
     1981 ctggcttctt ccaggatgga tgggaagatg tactttagga ttccctaggg ctcaaggcca
     2041 cttgtgtgct aatttagaga tgactccagc aaatttacca agagatctgt attcccctgg
     2101 tatgatcatg tagcatctat ttttatgcta ttagtaggat tggaagatgt acctccccat
     2161 atcaaagcct taacagaatt cacccaaaag cccctaaatg attaatcctt gaggccgcct
     2221 ctatgatgag aaaagtggta ttacagaatc acacggccct tgatagcctt atagcatctc
     2281 aaggaggcac ctgtgctata attcaaaccg aatgctgtgt tttcatacca gacaaatcct
     2341 ctgctaggat gcatttaatg accacatgaa aaaccagatt tctgccttaa gtgattcact
     2401 tcctagtctt ggtgatggtt gtagggagct ggtttggttc tggaacctca tggcttaatt
     2461 ccctacttat gactttatta atgttactac ctgtatgata tcctgtctgt tttataagat
     2521 cgttgtctct tgtattaccc aatgtgtaac caggcctttg acaaaattaa tgaggcagtc
     2581 agtcacatat gactctatat tgaataactg gaatggtgca actctagata tgagaagaaa
     2641 caaggaaaaa cacttcccgg atcataacag attagttaag acaggtgatc cagagaattt
     2701 tagtcaacag ggcctaatcc aaaaatacta cattggccta tcaagtcctc atctgaccta
     2761 cgaaatgaga attcccagca ccgtgggaca aactggccat gaatggaggg taacaggcca
     2821 cattctgtgc tctggatact ggcctcagtt aagatgcaca cctgaaggat attttcactg
     2881 agcccagact cctgcatctt ctcatgcata gaaaagcact aaaagcatta acctgagatg
     2941 cctgtttttg tggttagcag gaatctttgt tcagcatttc ctatttcaag caaaaacctc
     3001 ctgcatacgt accctggctc ctccgttgcc tctcaggcct gacaggctac gtagtcttca
     3061 gtaaggcccc cacaaactga aggttgtgcg tttttcttca gtcagcagca gcctggtgcg
     3121 gctgacacga gtgcttcaca gtggcctagc ctatacggta atgaatgact cggtatgttt
     3181 tttatggctt ataagtcata ttcataacac agtattggaa acattgttac ataaaaagac
     3241 atttatctgt tatctgtgat aggctaatcc accatctgtc caactacgag agaggcaaag
     3301 atctaaaacg taagagcact aacacattct taattttata tcaaatacca ctcaccttat
     3361 gcctgtgtac ggatacacta gtacctacat gtatttcatg cattcatgac atacctgact
     3421 ctcgtttcaa tatttctagg ctgtgtggtt tgagtttttt tcagattgtt gcgaatctcc
     3481 aaaaaatttc gaatatattt attgaataaa atccaccttt aagtggaccc atgcaattca
     3541 a
//
LOCUS       XR_004347823             768 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746653
            (LOC116746653), ncRNA.
ACCESSION   XR_004347823
VERSION     XR_004347823.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..768
                     /gene="LOC116746653"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746653"
     ncRNA           1..768
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746653"
                     /product="uncharacterized LOC116746653"
                     /db_xref="GeneID:116746653"
ORIGIN      
        1 gcttcctctc actgcatatg caggaaccag tcttttagaa catcaagaga gccccatttt
       61 ggccattttc aagttcaaca aaactatgat attatagttc atttggaaaa atacacaaaa
      121 gtagctagaa aacactgaaa caacccacag agtctctatg atggaaaaac cgctggactg
      181 accaacaatg accaacggga gaggacacca agaccagaga cggagccacg cgcccaagaa
      241 aatccagctc gagagaagtg gcatttcaaa ccagtatata caacagtgat tatttctgta
      301 cgttacaaac ggatctccag gataagtccc gttaccgtct gtcaccacgc aaggatgcta
      361 cataattatt gactgttttc cccacactgt acacttgata aatggatgaa ttggatggta
      421 tgtgaattat agttcaagag agctgttaac atgaatgaaa tctgtcacga ggaataaaga
      481 gaacaggatg gaggcaacag agaaggcagt gacctttctc taaacacagt gttttgaaca
      541 gttttgactt ctggataata ttctacacgt gcaaaaaaat acaatcagat taacaagaac
      601 tggagaaaac cctaacactg aatgcaaaaa gaaacaagtg cacaggactg tctctctagt
      661 aacatgatca cctgaaggcg aggtggggaa ggaggaggtt aagtaactga acacagagca
      721 ctgtgactgt acaccctcgg aataaagaaa aaaattctgc aaactctt
//
LOCUS       XM_032618180            8117 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus F-box protein 25 (FBXO25), transcript
            variant X1, mRNA.
ACCESSION   XM_032618180
VERSION     XM_032618180.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8117
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8117
                     /gene="FBXO25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 long SRA reads, 2 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746654"
     CDS             127..1680
                     /gene="FBXO25"
                     /codon_start=1
                     /product="F-box only protein 25 isoform X1"
                     /protein_id="XP_032474071.1"
                     /db_xref="GeneID:116746654"
                     /translation="MPFLGQDWRSPGWSWIKTEDGWKRCEPWSEGLEGENDRCGASHG
                     TILNSEDEEIFNNEEHEYASKKRKKDHFRNDKNTQCFYREKWIYVHKESTRERHGYCT
                     LGEAFNRLDFFSAVQDARRFTYVARLLQLIAKSQLTSLSGVAQKNYFNVLDKIVQKVL
                     DDHQNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWVCRLETILNWQQQLQNLQM
                     TEQVDSGLTLSDLPVHMLSNILYRFSDGWDIVTLGQVTPTLSALSEDRRLWKKLCQYH
                     FGEKQFCRHLILSEKGHIEWKLMYFALQKHYPTKEQYGDTLHFCRHCSILFWKDCRLA
                     LLLEVPPALPASARVPRRLVPLRPHPLLMCDWPACFAMTGGPMSCPVDQREGVDFAAG
                     SPALLAPSPEAALSPDLSPVSAAGCRAGPSGEWGGRCREQVPGWTLTHGGRGGARPGR
                     GRRAQGSLWGPNSGRPVSPSTGAGIPSGSLSPGEPCGCLHFRSSHRLLSTHLCGGVRG
                     VFKQAAGDF"
     misc_feature    805..939
                     /gene="FBXO25"
                     /note="F-box domain found in F-box only protein 25
                     (FBXO25) and similar proteins; Region: F-box_FBXO25;
                     cd22099"
                     /db_xref="CDD:438871"
     misc_feature    order(817..819,829..831,838..843,850..855,868..870,
                     874..879,889..897,901..903)
                     /gene="FBXO25"
                     /note="putative Skp1 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:438871"
ORIGIN      
        1 cgcggcgctc ccgggtaggc ggtgggcgat ttccggcaat aaatccggac gggccgccgt
       61 caggtgccgg ctgggggttg tcagtgcgcc aggtggggcc cggaccgtcg gcgcgccagg
      121 agagctatgc catttttggg ccaggactgg agatctcctg gatggagctg gattaaaaca
      181 gaagacggct ggaaaagatg tgaaccctgg agtgagggac ttgaaggaga gaatgaccgg
      241 tgtggcgcca gccacggcac tatcttaaat agtgaagatg aagaaatatt caataatgaa
      301 gagcatgaat atgcatccaa aaaaaggaaa aaggaccatt ttagaaatga caaaaatact
      361 cagtgttttt atcgtgaaaa atggatctat gtccataaag aaagcacaag agaaagacac
      421 ggctactgca ctttgggaga agcttttaac cgcttagact tcttcagtgc ggtccaggac
      481 gcccggaggt tcacttacgt ggccagactg ttgcagctga tcgcaaagtc ccagctgacc
      541 tcgctgagcg gtgtcgccca gaagaactac ttcaacgttc tggataaaat cgttcaaaaa
      601 gttctcgatg accaccaaaa ccctcgccta atcaaagatc ttctccaaga cctaagctct
      661 accctttgca ttctaattag aggagtgggg aagtctgttc tggtgggaaa tatcaacatt
      721 tgggtttgcc gattagaaac tattctcaac tggcaacagc agctacagaa tcttcagatg
      781 actgagcagg tggacagcgg cctgacgctc agcgaccttc ccgtgcacat gctcagcaac
      841 atcctgtaca ggttctcgga tgggtgggac atcgtcactc tgggtcaggt gaccccgaca
      901 ctgtccgcgc ttagcgagga ccggcggctg tggaagaagc tctgccagta ccacttcggt
      961 gagaagcagt tttgtagaca cttgatcctt tcagaaaaag gtcatatcga atggaagttg
     1021 atgtattttg cacttcagaa acattacccc actaaggaac agtacggaga cacactgcac
     1081 ttttgtcggc actgcagcat cctcttttgg aaggactgcc gccttgcttt attactcgag
     1141 gtacctcctg ctctgcccgc gtctgcgcgc gtccccagga ggctggtgcc cctcaggccg
     1201 caccctctgc tgatgtgcga ctggcctgct tgcttcgcca tgaccggggg tcccatgagc
     1261 tgccctgtag accagaggga gggtgtagac tttgccgccg ggtccccggc cttactggcc
     1321 cccagtcctg aggctgctct gtctcctgac ctgagccccg tttctgctgc gggatgcagg
     1381 gctgggccct ctggtgagtg gggtgggcgg tgccgagagc aggtcccggg gtggaccctg
     1441 acccacggcg ggaggggagg agcgcggcca ggacgggggc gcagagccca gggctccctc
     1501 tggggcccta actcagggcg gcccgtctcc ccgtccactg gagcaggaat tccttcggga
     1561 agtctctccc ccggggagcc gtgtggctgc cttcattttc gtagttctca tcgcttgctg
     1621 tccacgcacc tttgtggtgg ggtccggggc gtgtttaaac aagcagctgg cgacttctga
     1681 gctgcgttcc ctccagaaac acgccccgtg tggtaacgac ccactcctcc cgcaggactc
     1741 gggccacccc tgcacggctg ctgaccctga cagctgcttc acgcctgtgt ccccgcagca
     1801 cttcatcgac ctcttcaagt tctaagggcc caaccgtgcc gtggtctggg cagcgtggta
     1861 ggacgcgtcc tccgtgaccg agccgtgacc tggtgcccag gctggagggc gtggagggac
     1921 gtggaaaagt gccctggcac ctgcgggcgg gagcatctgt tgtttccacc catgaagtgg
     1981 ggccagggag cccaaggaaa atcatttcta cttccttctt taaaaaatgc ttttcttcta
     2041 agcgcattaa aatgtgcaac tttgcatgtt tgtgaatgtg gttcagaaag agtctgtatt
     2101 ttcagcaccg catcctgtgc tgaactgaca ctaacagcca agcatacgct tcttaattgt
     2161 caaatgatag tttcctgatt ttgtagtgat cgggggcggg gatagatcat tgatccttgt
     2221 aaggacattg tgcagaatat ttatttttct tgagatgtat tttgactgta ttggtcgtgt
     2281 ccatatgaat actcttgggt acagaaggaa cccagggaag tatgtgcatg tcttctgggt
     2341 gctcagcgtg gggttgtgaa ttgtgcagac atccgagacc cacaaaggcg tgagtctggg
     2401 gctgtgatcc tgggctcatg gcccgatgct ggcaggcagg ggccctgacc tgggggccag
     2461 cccagtgtga cctgcactgt agtgctctga atccccgttt gcaggcgaag taataagtct
     2521 cgtttatcta ccgattttaa cttcatcagt tttgcatctt acggaaggaa gtagtatcaa
     2581 tgattttgat atcatttatt gaaacctttc aaacattgtt ttatttttaa aaatactgca
     2641 tgtacgtttt agaagatttt gaaaataaag gtttataaaa gaataaaact tgcatataac
     2701 cctgccaccc agagatagct gtgcttacca gaaggaatgc aggaatggcc ccggcaggtg
     2761 taggggagac tgaacagggt caaggaccca agcaaagtca tttctacttc cttcttagca
     2821 catggaaatt tgctgttttg catatttgta aataaagagt gtattttcac tacattgtgc
     2881 tgaactgaca cagccaagac tatgcttaat tgtcaaatga tagtttccct ctgtgtgtat
     2941 tgggtgaaag cttttcataa aaccgtaaac atcatatata ctgttttcat tttataacca
     3001 gccttttttt caaaagtgtt tgtgaaaata atggttttta ctggcgacct ggtaccacac
     3061 agctggaaca gatcactttg tgatcagcat caccacatgt gcacctttgt gcatctgatg
     3121 atcttacgat aaacgagaag cagaaccagg gaaacgagtc agttgtttgt aaggatgttt
     3181 ccagagcact ggcgaggatg gaaggcggca tctttctccc ccgaagatgg acgtgaagag
     3241 gctgtgaggt aggacatgtc ttctgaaagc ttattggcga gttgtttctg tatttttttt
     3301 aatatataaa tttatttatt tttggctgag ctgggtcttc gttgctgcgc gcgggctttc
     3361 tctagttgcg gcgagcgggg gctactcttc gttgcggtgc acgtgcttct cattctggtg
     3421 gcttctcttg ttgcagagca cgggctctag gcacgtaggc ttcagtgttt gcagcacgca
     3481 ggctccgtag ttgtggcaca tgggcttagc tgctctgcgg aatgtgggat cttccccaac
     3541 cagagctcga acccgtgccc cctgcgttgg caggcgggtt cttaaccact gcaccactag
     3601 ggaagccctg tattttgttt tgctttggca aattacctaa ttgggttctt tgcctgtttt
     3661 actttttggg tgttagtctt ttttgtataa gtttcttctt aggaggacgt taacctcttg
     3721 aagtgagttt tttccccaga taacattaaa agtcttggga gaagagtcca gctgttcccc
     3781 ctgttaatta gcccgtttcc agaggcagca gatgtgcttg gacccaaaac cacacacagg
     3841 cattggcaaa acctatagca ggtgtgcctg aggcccgcag cactgggagg gggcgtgagc
     3901 aggatacatt tgggggcagg cagagagttc caggcacaca gttcctgggt cctgatcact
     3961 catttacgga agatcagatg acgtgaacag gaagagaggg atcgtcctga gctgcaggtt
     4021 catgtgtcat ttctgagtgt ggttccctca gcgggctcac cagactcggg ctgcacggtg
     4081 tcactcccca cgatgcgtca tctgcacgcc ctctaccctc tcagcacggc caggagcggg
     4141 cccagagctg cccctgcggg aactgccacc ctcaggaagt ggcatctgga agtctgtggc
     4201 gtcttccttt gccttgaggt acattttctc ccccgggttg tgactcatgg gccaggagga
     4261 gccacattag gttctgcagc aggtcccggt gctagtctgg gagtttcatg gcatctgttg
     4321 tgcgtttgct cagggctgtc catggagaac catgtctcct ttagggacag tattgaagga
     4381 tttgatgtta tttctgctgt aaatgctgct ttaagaatca tatagattct aacaaacata
     4441 cagaatcaaa caaaatgctc atgtaaggtg tttgtatact gattttgtat cctgtaactt
     4501 tgctgaaatc actaattaaa cctagcggta atttttgtag attccttagg acgtggatat
     4561 acatcgtgtc ctctgcaaat agaggtggct tttcaccttt ccttctttct tccctccctc
     4621 cctccctcct tccctctctc ctctccttcc cagctttccg gccagacccc catgcacgtg
     4681 gatggcagtg cacacacatc ctagcatgtt cctgggaggc tccctgccct tcgcctgtgg
     4741 gtgtggtgca tgctgggcct ctgtggacgc ctgtatcagg gtgaggtgct cccatccagc
     4801 ctcgctttgt tgacgtgttt tttttttttt ttaaccatga aaggatgtta gattttgtcg
     4861 agtgctcttt ctacatctac agaggtggtc gtgtgttgac ttttgtatgt tgaacccacc
     4921 ttgcattttc aggcccacgt cccatgtggt ttccatacac agttggtgag tttagtttgc
     4981 tggttttact gagcattttc acaagagaga ttagctgtgc ttttctggtg agtctttgtc
     5041 tggttttggt atcagggtga aaacagcctc ctagaaggag cttgcctcgg gagcgttccc
     5101 tcccattttc tgggaagggt ttgtgaagaa ttggtgtgtg tcctccttta agcattagga
     5161 taattccttg gaaactgaag ttactgagga gaagcgtctg ttttcagttt agtgacatcc
     5221 tcccttttgg aaaatccttt gcctttaacg ggatagagta gttttgtctt agttgagacg
     5281 tatcttggtt agagctcatt ttcttcatca tgggccctaa cctagcaata aacgggctgt
     5341 aaacttcatc tgctgctttc ctccatagtt acagaaggaa gtgtgctgaa aaccatagat
     5401 gaaaaggcag aagctgtctt ggcttatgac atttctttct ttcattaacg gtgtgagaaa
     5461 atgcatatgc ttcactcctc tccctttcct gtattcccca ccaaacgcag catcaccccc
     5521 acccggtgag atacccaagg atctgcaaac ctgggaggac ccagtgattt cctgctgccg
     5581 acacctgctc ggctgaaagg cccgacaccc acttgcttct cagctcgcac tcccctgctc
     5641 ctacctgggt gtggtcgcgt cttctgacct cactccagac gagctctgct ttctgtccct
     5701 ttttgcagag gaagcagacc ctcacttttg gagaacagtg tcccctgggc gcccccccag
     5761 aatcccagca gggacatgcc acgtgcacct tcccgacccc tgctatggct ggtgtggcct
     5821 gctccttccc accgcacagg tgtgactgca gcgccccttc gccagcacct tctcggtgtc
     5881 atcggcacat gcatctctca ggcgtattcc tgggggtcct gctgccctcc ccgcccccag
     5941 caccgactca ggcccacatg gagaacagag gtgctcagag cacagccacc tgaggacgca
     6001 agagggcttt tcacgtgcct ctcgctcagg atggcgagat tcttcacaca cagtgtttgt
     6061 tcttctgtgt cagacaggag agacacctca actatgttgt ttttatttgg ataaaatttt
     6121 cacttttctt tgacagtcat ttgagaaatt tgcacagaca aatgcaagta gctttttact
     6181 atttaatcta catagagaat tcaaatgtca ttaaaaattt ttaattgcag taaaatacac
     6241 ataaaattgg ccatcttaac cgtttttcag tgtacagtcc agtggcatta ggtacattca
     6301 cactgttgtg caaacaccac caccgtcatc tgcagaacac tttttatctc tgcaaacaga
     6361 aactgtcccc attaaacact gattcccctt ccccatccac cagcccctgg cccccaccat
     6421 ctactttgtc tccgtggatc tgactgctgt agacacacca tgtaactgga atcataaagt
     6481 agttgtcttt tcacccgtgt tgtagcatca ctcaggattt ccttcacttg tgagctgaat
     6541 agtgttccat tgtgtggttg gaccacattc tgtttgtctg ttgatgggca cttgggttgc
     6601 ttccaccttt gggctgctgt caacctggtg tacacatctc tcttctagat aaaggtttcg
     6661 tttccttttg aatgtatacc cagaagtgga attgctggat catgtgctaa ttatatagtt
     6721 agtattttga ggaaccacca tactattttc catggtggga gtgtaaaatg gtgcagcctc
     6781 taacagtgcc caggggctcc aatttctcta catcctcacc aacacttgct atcttgtggg
     6841 gttgggcttt ttttgcttgt tttttatagt agttgtccac atggttggga ggtgatatct
     6901 cattatggct ttgattttca tttccctgat gagaagtgat gttgagcatc ttctgtgctt
     6961 gttggctgtt tatgtgtctt tcttggggaa atgtctattc aggtcctttg ccctcttttt
     7021 aattgagttg tatgtggctt tgttgttgaa tatagaaaga actactacaa ctctggacac
     7081 taagtcctta ccatctagac aacttgaaaa tgttctctcc gattccctag gttgcctttt
     7141 cactctgttg attgtgtcct tggatgcaca gaggttttta attttgatgt ccactttctc
     7201 tattcttttt tttggtgcct gcacattttg tgtcatatcc aggatttcat ttgccaaatc
     7261 cagtgtcatg aagctttctc cctatgtttt cttctaagag ttttatagtt ttaattcttg
     7321 cacgaggcat aataaggtaa ggatccaact tcattcgttt gcatgtggat atgtggtttt
     7381 cccagcaaag tgtgttgact gtcctttccc tactgaatgg ttttggcacc cttgctgaaa
     7441 atcatttgac caaatatgcc attatgactt gggtggggat tgtattgact ctatagattg
     7501 ctttgggtgg aagttttcca atccatgaac atgggatgtc ttccacttat ttgtgtcttt
     7561 ttctttcagc ctttttcact cagtgcattc ctaagtgttt tattcttttt gttgccatta
     7621 aaaatggaat tttcttaatt tcctctttgg atttttcatt gttattgtat agaaatgcaa
     7681 ctgatgtttg tatgttgatt ttttgttgtc gtctttagga ttttctacat gtaagatcat
     7741 gccacctgca aacagaaaat tttaatactt cctttccaat ttggatgctt tctttctttt
     7801 tcttgcccag atggctctgt ctggtgcaga cttccaatct gtgtggaaca gaagtagtga
     7861 gagtgggcat tttgtcttgt tcctgatctt agaggaaaag ctttcagtct ttcagcattg
     7921 agaggatgtc agctgggact ttttatatgg ctgtataatg ttggggcagt ttccttctat
     7981 tcagaattag ttgagtattt ccatcgtgaa agggtgttga attttgtcaa ctgctttttc
     8041 tgcatcaatt gaaatggtca tgtttttcct ttgttctgtg tataataacg tgtattaaat
     8101 tgattgacct aatggtg
//
LOCUS       XM_032618181            8114 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus F-box protein 25 (FBXO25), transcript
            variant X2, mRNA.
ACCESSION   XM_032618181
VERSION     XM_032618181.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8114
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8114
                     /gene="FBXO25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 long SRA reads, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746654"
     CDS             127..1677
                     /gene="FBXO25"
                     /codon_start=1
                     /product="F-box only protein 25 isoform X2"
                     /protein_id="XP_032474072.1"
                     /db_xref="GeneID:116746654"
                     /translation="MPFLGQDWRSPGWSWIKTEDGWKRCEPWSEGLEGENDRCGASHG
                     TILNSEDEEIFNNEEHEYASKKRKKDHFRNDKNTQCFYREKWIYVHKESTRERHGYCT
                     LGEAFNRLDFFSAVQDARRFTYVARLLQLIAKSQLTSLSGVAQKNYFNVLDKIVQKVL
                     DDHQNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWVCRLETILNWQQQLQNLQM
                     TEVDSGLTLSDLPVHMLSNILYRFSDGWDIVTLGQVTPTLSALSEDRRLWKKLCQYHF
                     GEKQFCRHLILSEKGHIEWKLMYFALQKHYPTKEQYGDTLHFCRHCSILFWKDCRLAL
                     LLEVPPALPASARVPRRLVPLRPHPLLMCDWPACFAMTGGPMSCPVDQREGVDFAAGS
                     PALLAPSPEAALSPDLSPVSAAGCRAGPSGEWGGRCREQVPGWTLTHGGRGGARPGRG
                     RRAQGSLWGPNSGRPVSPSTGAGIPSGSLSPGEPCGCLHFRSSHRLLSTHLCGGVRGV
                     FKQAAGDF"
     misc_feature    802..936
                     /gene="FBXO25"
                     /note="F-box domain found in F-box only protein 25
                     (FBXO25) and similar proteins; Region: F-box_FBXO25;
                     cd22099"
                     /db_xref="CDD:438871"
     misc_feature    order(814..816,826..828,835..840,847..852,865..867,
                     871..876,886..894,898..900)
                     /gene="FBXO25"
                     /note="putative Skp1 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:438871"
ORIGIN      
        1 cgcggcgctc ccgggtaggc ggtgggcgat ttccggcaat aaatccggac gggccgccgt
       61 caggtgccgg ctgggggttg tcagtgcgcc aggtggggcc cggaccgtcg gcgcgccagg
      121 agagctatgc catttttggg ccaggactgg agatctcctg gatggagctg gattaaaaca
      181 gaagacggct ggaaaagatg tgaaccctgg agtgagggac ttgaaggaga gaatgaccgg
      241 tgtggcgcca gccacggcac tatcttaaat agtgaagatg aagaaatatt caataatgaa
      301 gagcatgaat atgcatccaa aaaaaggaaa aaggaccatt ttagaaatga caaaaatact
      361 cagtgttttt atcgtgaaaa atggatctat gtccataaag aaagcacaag agaaagacac
      421 ggctactgca ctttgggaga agcttttaac cgcttagact tcttcagtgc ggtccaggac
      481 gcccggaggt tcacttacgt ggccagactg ttgcagctga tcgcaaagtc ccagctgacc
      541 tcgctgagcg gtgtcgccca gaagaactac ttcaacgttc tggataaaat cgttcaaaaa
      601 gttctcgatg accaccaaaa ccctcgccta atcaaagatc ttctccaaga cctaagctct
      661 accctttgca ttctaattag aggagtgggg aagtctgttc tggtgggaaa tatcaacatt
      721 tgggtttgcc gattagaaac tattctcaac tggcaacagc agctacagaa tcttcagatg
      781 actgaggtgg acagcggcct gacgctcagc gaccttcccg tgcacatgct cagcaacatc
      841 ctgtacaggt tctcggatgg gtgggacatc gtcactctgg gtcaggtgac cccgacactg
      901 tccgcgctta gcgaggaccg gcggctgtgg aagaagctct gccagtacca cttcggtgag
      961 aagcagtttt gtagacactt gatcctttca gaaaaaggtc atatcgaatg gaagttgatg
     1021 tattttgcac ttcagaaaca ttaccccact aaggaacagt acggagacac actgcacttt
     1081 tgtcggcact gcagcatcct cttttggaag gactgccgcc ttgctttatt actcgaggta
     1141 cctcctgctc tgcccgcgtc tgcgcgcgtc cccaggaggc tggtgcccct caggccgcac
     1201 cctctgctga tgtgcgactg gcctgcttgc ttcgccatga ccgggggtcc catgagctgc
     1261 cctgtagacc agagggaggg tgtagacttt gccgccgggt ccccggcctt actggccccc
     1321 agtcctgagg ctgctctgtc tcctgacctg agccccgttt ctgctgcggg atgcagggct
     1381 gggccctctg gtgagtgggg tgggcggtgc cgagagcagg tcccggggtg gaccctgacc
     1441 cacggcggga ggggaggagc gcggccagga cgggggcgca gagcccaggg ctccctctgg
     1501 ggccctaact cagggcggcc cgtctccccg tccactggag caggaattcc ttcgggaagt
     1561 ctctcccccg gggagccgtg tggctgcctt cattttcgta gttctcatcg cttgctgtcc
     1621 acgcaccttt gtggtggggt ccggggcgtg tttaaacaag cagctggcga cttctgagct
     1681 gcgttccctc cagaaacacg ccccgtgtgg taacgaccca ctcctcccgc aggactcggg
     1741 ccacccctgc acggctgctg accctgacag ctgcttcacg cctgtgtccc cgcagcactt
     1801 catcgacctc ttcaagttct aagggcccaa ccgtgccgtg gtctgggcag cgtggtagga
     1861 cgcgtcctcc gtgaccgagc cgtgacctgg tgcccaggct ggagggcgtg gagggacgtg
     1921 gaaaagtgcc ctggcacctg cgggcgggag catctgttgt ttccacccat gaagtggggc
     1981 cagggagccc aaggaaaatc atttctactt ccttctttaa aaaatgcttt tcttctaagc
     2041 gcattaaaat gtgcaacttt gcatgtttgt gaatgtggtt cagaaagagt ctgtattttc
     2101 agcaccgcat cctgtgctga actgacacta acagccaagc atacgcttct taattgtcaa
     2161 atgatagttt cctgattttg tagtgatcgg gggcggggat agatcattga tccttgtaag
     2221 gacattgtgc agaatattta tttttcttga gatgtatttt gactgtattg gtcgtgtcca
     2281 tatgaatact cttgggtaca gaaggaaccc agggaagtat gtgcatgtct tctgggtgct
     2341 cagcgtgggg ttgtgaattg tgcagacatc cgagacccac aaaggcgtga gtctggggct
     2401 gtgatcctgg gctcatggcc cgatgctggc aggcaggggc cctgacctgg gggccagccc
     2461 agtgtgacct gcactgtagt gctctgaatc cccgtttgca ggcgaagtaa taagtctcgt
     2521 ttatctaccg attttaactt catcagtttt gcatcttacg gaaggaagta gtatcaatga
     2581 ttttgatatc atttattgaa acctttcaaa cattgtttta tttttaaaaa tactgcatgt
     2641 acgttttaga agattttgaa aataaaggtt tataaaagaa taaaacttgc atataaccct
     2701 gccacccaga gatagctgtg cttaccagaa ggaatgcagg aatggccccg gcaggtgtag
     2761 gggagactga acagggtcaa ggacccaagc aaagtcattt ctacttcctt cttagcacat
     2821 ggaaatttgc tgttttgcat atttgtaaat aaagagtgta ttttcactac attgtgctga
     2881 actgacacag ccaagactat gcttaattgt caaatgatag tttccctctg tgtgtattgg
     2941 gtgaaagctt ttcataaaac cgtaaacatc atatatactg ttttcatttt ataaccagcc
     3001 tttttttcaa aagtgtttgt gaaaataatg gtttttactg gcgacctggt accacacagc
     3061 tggaacagat cactttgtga tcagcatcac cacatgtgca cctttgtgca tctgatgatc
     3121 ttacgataaa cgagaagcag aaccagggaa acgagtcagt tgtttgtaag gatgtttcca
     3181 gagcactggc gaggatggaa ggcggcatct ttctcccccg aagatggacg tgaagaggct
     3241 gtgaggtagg acatgtcttc tgaaagctta ttggcgagtt gtttctgtat tttttttaat
     3301 atataaattt atttattttt ggctgagctg ggtcttcgtt gctgcgcgcg ggctttctct
     3361 agttgcggcg agcgggggct actcttcgtt gcggtgcacg tgcttctcat tctggtggct
     3421 tctcttgttg cagagcacgg gctctaggca cgtaggcttc agtgtttgca gcacgcaggc
     3481 tccgtagttg tggcacatgg gcttagctgc tctgcggaat gtgggatctt ccccaaccag
     3541 agctcgaacc cgtgccccct gcgttggcag gcgggttctt aaccactgca ccactaggga
     3601 agccctgtat tttgttttgc tttggcaaat tacctaattg ggttctttgc ctgttttact
     3661 ttttgggtgt tagtcttttt tgtataagtt tcttcttagg aggacgttaa cctcttgaag
     3721 tgagtttttt ccccagataa cattaaaagt cttgggagaa gagtccagct gttccccctg
     3781 ttaattagcc cgtttccaga ggcagcagat gtgcttggac ccaaaaccac acacaggcat
     3841 tggcaaaacc tatagcaggt gtgcctgagg cccgcagcac tgggaggggg cgtgagcagg
     3901 atacatttgg gggcaggcag agagttccag gcacacagtt cctgggtcct gatcactcat
     3961 ttacggaaga tcagatgacg tgaacaggaa gagagggatc gtcctgagct gcaggttcat
     4021 gtgtcatttc tgagtgtggt tccctcagcg ggctcaccag actcgggctg cacggtgtca
     4081 ctccccacga tgcgtcatct gcacgccctc taccctctca gcacggccag gagcgggccc
     4141 agagctgccc ctgcgggaac tgccaccctc aggaagtggc atctggaagt ctgtggcgtc
     4201 ttcctttgcc ttgaggtaca ttttctcccc cgggttgtga ctcatgggcc aggaggagcc
     4261 acattaggtt ctgcagcagg tcccggtgct agtctgggag tttcatggca tctgttgtgc
     4321 gtttgctcag ggctgtccat ggagaaccat gtctccttta gggacagtat tgaaggattt
     4381 gatgttattt ctgctgtaaa tgctgcttta agaatcatat agattctaac aaacatacag
     4441 aatcaaacaa aatgctcatg taaggtgttt gtatactgat tttgtatcct gtaactttgc
     4501 tgaaatcact aattaaacct agcggtaatt tttgtagatt ccttaggacg tggatataca
     4561 tcgtgtcctc tgcaaataga ggtggctttt cacctttcct tctttcttcc ctccctccct
     4621 ccctccttcc ctctctcctc tccttcccag ctttccggcc agacccccat gcacgtggat
     4681 ggcagtgcac acacatccta gcatgttcct gggaggctcc ctgcccttcg cctgtgggtg
     4741 tggtgcatgc tgggcctctg tggacgcctg tatcagggtg aggtgctccc atccagcctc
     4801 gctttgttga cgtgtttttt ttttttttta accatgaaag gatgttagat tttgtcgagt
     4861 gctctttcta catctacaga ggtggtcgtg tgttgacttt tgtatgttga acccaccttg
     4921 cattttcagg cccacgtccc atgtggtttc catacacagt tggtgagttt agtttgctgg
     4981 ttttactgag cattttcaca agagagatta gctgtgcttt tctggtgagt ctttgtctgg
     5041 ttttggtatc agggtgaaaa cagcctccta gaaggagctt gcctcgggag cgttccctcc
     5101 cattttctgg gaagggtttg tgaagaattg gtgtgtgtcc tcctttaagc attaggataa
     5161 ttccttggaa actgaagtta ctgaggagaa gcgtctgttt tcagtttagt gacatcctcc
     5221 cttttggaaa atcctttgcc tttaacggga tagagtagtt ttgtcttagt tgagacgtat
     5281 cttggttaga gctcattttc ttcatcatgg gccctaacct agcaataaac gggctgtaaa
     5341 cttcatctgc tgctttcctc catagttaca gaaggaagtg tgctgaaaac catagatgaa
     5401 aaggcagaag ctgtcttggc ttatgacatt tctttctttc attaacggtg tgagaaaatg
     5461 catatgcttc actcctctcc ctttcctgta ttccccacca aacgcagcat cacccccacc
     5521 cggtgagata cccaaggatc tgcaaacctg ggaggaccca gtgatttcct gctgccgaca
     5581 cctgctcggc tgaaaggccc gacacccact tgcttctcag ctcgcactcc cctgctccta
     5641 cctgggtgtg gtcgcgtctt ctgacctcac tccagacgag ctctgctttc tgtccctttt
     5701 tgcagaggaa gcagaccctc acttttggag aacagtgtcc cctgggcgcc cccccagaat
     5761 cccagcaggg acatgccacg tgcaccttcc cgacccctgc tatggctggt gtggcctgct
     5821 ccttcccacc gcacaggtgt gactgcagcg ccccttcgcc agcaccttct cggtgtcatc
     5881 ggcacatgca tctctcaggc gtattcctgg gggtcctgct gccctccccg cccccagcac
     5941 cgactcaggc ccacatggag aacagaggtg ctcagagcac agccacctga ggacgcaaga
     6001 gggcttttca cgtgcctctc gctcaggatg gcgagattct tcacacacag tgtttgttct
     6061 tctgtgtcag acaggagaga cacctcaact atgttgtttt tatttggata aaattttcac
     6121 ttttctttga cagtcatttg agaaatttgc acagacaaat gcaagtagct ttttactatt
     6181 taatctacat agagaattca aatgtcatta aaaattttta attgcagtaa aatacacata
     6241 aaattggcca tcttaaccgt ttttcagtgt acagtccagt ggcattaggt acattcacac
     6301 tgttgtgcaa acaccaccac cgtcatctgc agaacacttt ttatctctgc aaacagaaac
     6361 tgtccccatt aaacactgat tccccttccc catccaccag cccctggccc ccaccatcta
     6421 ctttgtctcc gtggatctga ctgctgtaga cacaccatgt aactggaatc ataaagtagt
     6481 tgtcttttca cccgtgttgt agcatcactc aggatttcct tcacttgtga gctgaatagt
     6541 gttccattgt gtggttggac cacattctgt ttgtctgttg atgggcactt gggttgcttc
     6601 cacctttggg ctgctgtcaa cctggtgtac acatctctct tctagataaa ggtttcgttt
     6661 ccttttgaat gtatacccag aagtggaatt gctggatcat gtgctaatta tatagttagt
     6721 attttgagga accaccatac tattttccat ggtgggagtg taaaatggtg cagcctctaa
     6781 cagtgcccag gggctccaat ttctctacat cctcaccaac acttgctatc ttgtggggtt
     6841 gggctttttt tgcttgtttt ttatagtagt tgtccacatg gttgggaggt gatatctcat
     6901 tatggctttg attttcattt ccctgatgag aagtgatgtt gagcatcttc tgtgcttgtt
     6961 ggctgtttat gtgtctttct tggggaaatg tctattcagg tcctttgccc tctttttaat
     7021 tgagttgtat gtggctttgt tgttgaatat agaaagaact actacaactc tggacactaa
     7081 gtccttacca tctagacaac ttgaaaatgt tctctccgat tccctaggtt gccttttcac
     7141 tctgttgatt gtgtccttgg atgcacagag gtttttaatt ttgatgtcca ctttctctat
     7201 tctttttttt ggtgcctgca cattttgtgt catatccagg atttcatttg ccaaatccag
     7261 tgtcatgaag ctttctccct atgttttctt ctaagagttt tatagtttta attcttgcac
     7321 gaggcataat aaggtaagga tccaacttca ttcgtttgca tgtggatatg tggttttccc
     7381 agcaaagtgt gttgactgtc ctttccctac tgaatggttt tggcaccctt gctgaaaatc
     7441 atttgaccaa atatgccatt atgacttggg tggggattgt attgactcta tagattgctt
     7501 tgggtggaag ttttccaatc catgaacatg ggatgtcttc cacttatttg tgtctttttc
     7561 tttcagcctt tttcactcag tgcattccta agtgttttat tctttttgtt gccattaaaa
     7621 atggaatttt cttaatttcc tctttggatt tttcattgtt attgtataga aatgcaactg
     7681 atgtttgtat gttgattttt tgttgtcgtc tttaggattt tctacatgta agatcatgcc
     7741 acctgcaaac agaaaatttt aatacttcct ttccaatttg gatgctttct ttctttttct
     7801 tgcccagatg gctctgtctg gtgcagactt ccaatctgtg tggaacagaa gtagtgagag
     7861 tgggcatttt gtcttgttcc tgatcttaga ggaaaagctt tcagtctttc agcattgaga
     7921 ggatgtcagc tgggactttt tatatggctg tataatgttg gggcagtttc cttctattca
     7981 gaattagttg agtatttcca tcgtgaaagg gtgttgaatt ttgtcaactg ctttttctgc
     8041 atcaattgaa atggtcatgt ttttcctttg ttctgtgtat aataacgtgt attaaattga
     8101 ttgacctaat ggtg
//
LOCUS       XM_032618183            7522 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus F-box protein 25 (FBXO25), transcript
            variant X3, mRNA.
ACCESSION   XM_032618183
VERSION     XM_032618183.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7522
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7522
                     /gene="FBXO25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 23 long SRA reads, 4 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746654"
     CDS             127..1230
                     /gene="FBXO25"
                     /codon_start=1
                     /product="F-box only protein 25 isoform X3"
                     /protein_id="XP_032474074.1"
                     /db_xref="GeneID:116746654"
                     /translation="MPFLGQDWRSPGWSWIKTEDGWKRCEPWSEGLEGENDRCGASHG
                     TILNSEDEEIFNNEEHEYASKKRKKDHFRNDKNTQCFYREKWIYVHKESTRERHGYCT
                     LGEAFNRLDFFSAVQDARRFTYVARLLQLIAKSQLTSLSGVAQKNYFNVLDKIVQKVL
                     DDHQNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWVCRLETILNWQQQLQNLQM
                     TEQVDSGLTLSDLPVHMLSNILYRFSDGWDIVTLGQVTPTLSALSEDRRLWKKLCQYH
                     FGEKQFCRHLILSEKGHIEWKLMYFALQKHYPTKEQYGDTLHFCRHCSILFWKDCRLA
                     LLLEDSGHPCTAADPDSCFTPVSPQHFIDLFKF"
     misc_feature    805..939
                     /gene="FBXO25"
                     /note="F-box domain superfamily; Region: F-box_SF;
                     cl45894"
                     /db_xref="CDD:459239"
     misc_feature    order(817..822,826..834,841..846,853..855,889..897,
                     901..903,910..912)
                     /gene="FBXO25"
                     /note="F-box motif; other site"
                     /db_xref="CDD:438852"
     misc_feature    order(817..819,829..831,838..843,850..855,868..870,
                     874..879,889..897,901..903)
                     /gene="FBXO25"
                     /note="Skp1 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438852"
ORIGIN      
        1 cgcggcgctc ccgggtaggc ggtgggcgat ttccggcaat aaatccggac gggccgccgt
       61 caggtgccgg ctgggggttg tcagtgcgcc aggtggggcc cggaccgtcg gcgcgccagg
      121 agagctatgc catttttggg ccaggactgg agatctcctg gatggagctg gattaaaaca
      181 gaagacggct ggaaaagatg tgaaccctgg agtgagggac ttgaaggaga gaatgaccgg
      241 tgtggcgcca gccacggcac tatcttaaat agtgaagatg aagaaatatt caataatgaa
      301 gagcatgaat atgcatccaa aaaaaggaaa aaggaccatt ttagaaatga caaaaatact
      361 cagtgttttt atcgtgaaaa atggatctat gtccataaag aaagcacaag agaaagacac
      421 ggctactgca ctttgggaga agcttttaac cgcttagact tcttcagtgc ggtccaggac
      481 gcccggaggt tcacttacgt ggccagactg ttgcagctga tcgcaaagtc ccagctgacc
      541 tcgctgagcg gtgtcgccca gaagaactac ttcaacgttc tggataaaat cgttcaaaaa
      601 gttctcgatg accaccaaaa ccctcgccta atcaaagatc ttctccaaga cctaagctct
      661 accctttgca ttctaattag aggagtgggg aagtctgttc tggtgggaaa tatcaacatt
      721 tgggtttgcc gattagaaac tattctcaac tggcaacagc agctacagaa tcttcagatg
      781 actgagcagg tggacagcgg cctgacgctc agcgaccttc ccgtgcacat gctcagcaac
      841 atcctgtaca ggttctcgga tgggtgggac atcgtcactc tgggtcaggt gaccccgaca
      901 ctgtccgcgc ttagcgagga ccggcggctg tggaagaagc tctgccagta ccacttcggt
      961 gagaagcagt tttgtagaca cttgatcctt tcagaaaaag gtcatatcga atggaagttg
     1021 atgtattttg cacttcagaa acattacccc actaaggaac agtacggaga cacactgcac
     1081 ttttgtcggc actgcagcat cctcttttgg aaggactgcc gccttgcttt attactcgag
     1141 gactcgggcc acccctgcac ggctgctgac cctgacagct gcttcacgcc tgtgtccccg
     1201 cagcacttca tcgacctctt caagttctaa gggcccaacc gtgccgtggt ctgggcagcg
     1261 tggtaggacg cgtcctccgt gaccgagccg tgacctggtg cccaggctgg agggcgtgga
     1321 gggacgtgga aaagtgccct ggcacctgcg ggcgggagca tctgttgttt ccacccatga
     1381 agtggggcca gggagcccaa ggaaaatcat ttctacttcc ttctttaaaa aatgcttttc
     1441 ttctaagcgc attaaaatgt gcaactttgc atgtttgtga atgtggttca gaaagagtct
     1501 gtattttcag caccgcatcc tgtgctgaac tgacactaac agccaagcat acgcttctta
     1561 attgtcaaat gatagtttcc tgattttgta gtgatcgggg gcggggatag atcattgatc
     1621 cttgtaagga cattgtgcag aatatttatt tttcttgaga tgtattttga ctgtattggt
     1681 cgtgtccata tgaatactct tgggtacaga aggaacccag ggaagtatgt gcatgtcttc
     1741 tgggtgctca gcgtggggtt gtgaattgtg cagacatccg agacccacaa aggcgtgagt
     1801 ctggggctgt gatcctgggc tcatggcccg atgctggcag gcaggggccc tgacctgggg
     1861 gccagcccag tgtgacctgc actgtagtgc tctgaatccc cgtttgcagg cgaagtaata
     1921 agtctcgttt atctaccgat tttaacttca tcagttttgc atcttacgga aggaagtagt
     1981 atcaatgatt ttgatatcat ttattgaaac ctttcaaaca ttgttttatt tttaaaaata
     2041 ctgcatgtac gttttagaag attttgaaaa taaaggttta taaaagaata aaacttgcat
     2101 ataaccctgc cacccagaga tagctgtgct taccagaagg aatgcaggaa tggccccggc
     2161 aggtgtaggg gagactgaac agggtcaagg acccaagcaa agtcatttct acttccttct
     2221 tagcacatgg aaatttgctg ttttgcatat ttgtaaataa agagtgtatt ttcactacat
     2281 tgtgctgaac tgacacagcc aagactatgc ttaattgtca aatgatagtt tccctctgtg
     2341 tgtattgggt gaaagctttt cataaaaccg taaacatcat atatactgtt ttcattttat
     2401 aaccagcctt tttttcaaaa gtgtttgtga aaataatggt ttttactggc gacctggtac
     2461 cacacagctg gaacagatca ctttgtgatc agcatcacca catgtgcacc tttgtgcatc
     2521 tgatgatctt acgataaacg agaagcagaa ccagggaaac gagtcagttg tttgtaagga
     2581 tgtttccaga gcactggcga ggatggaagg cggcatcttt ctcccccgaa gatggacgtg
     2641 aagaggctgt gaggtaggac atgtcttctg aaagcttatt ggcgagttgt ttctgtattt
     2701 tttttaatat ataaatttat ttatttttgg ctgagctggg tcttcgttgc tgcgcgcggg
     2761 ctttctctag ttgcggcgag cgggggctac tcttcgttgc ggtgcacgtg cttctcattc
     2821 tggtggcttc tcttgttgca gagcacgggc tctaggcacg taggcttcag tgtttgcagc
     2881 acgcaggctc cgtagttgtg gcacatgggc ttagctgctc tgcggaatgt gggatcttcc
     2941 ccaaccagag ctcgaacccg tgccccctgc gttggcaggc gggttcttaa ccactgcacc
     3001 actagggaag ccctgtattt tgttttgctt tggcaaatta cctaattggg ttctttgcct
     3061 gttttacttt ttgggtgtta gtcttttttg tataagtttc ttcttaggag gacgttaacc
     3121 tcttgaagtg agttttttcc ccagataaca ttaaaagtct tgggagaaga gtccagctgt
     3181 tccccctgtt aattagcccg tttccagagg cagcagatgt gcttggaccc aaaaccacac
     3241 acaggcattg gcaaaaccta tagcaggtgt gcctgaggcc cgcagcactg ggagggggcg
     3301 tgagcaggat acatttgggg gcaggcagag agttccaggc acacagttcc tgggtcctga
     3361 tcactcattt acggaagatc agatgacgtg aacaggaaga gagggatcgt cctgagctgc
     3421 aggttcatgt gtcatttctg agtgtggttc cctcagcggg ctcaccagac tcgggctgca
     3481 cggtgtcact ccccacgatg cgtcatctgc acgccctcta ccctctcagc acggccagga
     3541 gcgggcccag agctgcccct gcgggaactg ccaccctcag gaagtggcat ctggaagtct
     3601 gtggcgtctt cctttgcctt gaggtacatt ttctcccccg ggttgtgact catgggccag
     3661 gaggagccac attaggttct gcagcaggtc ccggtgctag tctgggagtt tcatggcatc
     3721 tgttgtgcgt ttgctcaggg ctgtccatgg agaaccatgt ctcctttagg gacagtattg
     3781 aaggatttga tgttatttct gctgtaaatg ctgctttaag aatcatatag attctaacaa
     3841 acatacagaa tcaaacaaaa tgctcatgta aggtgtttgt atactgattt tgtatcctgt
     3901 aactttgctg aaatcactaa ttaaacctag cggtaatttt tgtagattcc ttaggacgtg
     3961 gatatacatc gtgtcctctg caaatagagg tggcttttca cctttccttc tttcttccct
     4021 ccctccctcc ctccttccct ctctcctctc cttcccagct ttccggccag acccccatgc
     4081 acgtggatgg cagtgcacac acatcctagc atgttcctgg gaggctccct gcccttcgcc
     4141 tgtgggtgtg gtgcatgctg ggcctctgtg gacgcctgta tcagggtgag gtgctcccat
     4201 ccagcctcgc tttgttgacg tgtttttttt tttttttaac catgaaagga tgttagattt
     4261 tgtcgagtgc tctttctaca tctacagagg tggtcgtgtg ttgacttttg tatgttgaac
     4321 ccaccttgca ttttcaggcc cacgtcccat gtggtttcca tacacagttg gtgagtttag
     4381 tttgctggtt ttactgagca ttttcacaag agagattagc tgtgcttttc tggtgagtct
     4441 ttgtctggtt ttggtatcag ggtgaaaaca gcctcctaga aggagcttgc ctcgggagcg
     4501 ttccctccca ttttctggga agggtttgtg aagaattggt gtgtgtcctc ctttaagcat
     4561 taggataatt ccttggaaac tgaagttact gaggagaagc gtctgttttc agtttagtga
     4621 catcctccct tttggaaaat cctttgcctt taacgggata gagtagtttt gtcttagttg
     4681 agacgtatct tggttagagc tcattttctt catcatgggc cctaacctag caataaacgg
     4741 gctgtaaact tcatctgctg ctttcctcca tagttacaga aggaagtgtg ctgaaaacca
     4801 tagatgaaaa ggcagaagct gtcttggctt atgacatttc tttctttcat taacggtgtg
     4861 agaaaatgca tatgcttcac tcctctccct ttcctgtatt ccccaccaaa cgcagcatca
     4921 cccccacccg gtgagatacc caaggatctg caaacctggg aggacccagt gatttcctgc
     4981 tgccgacacc tgctcggctg aaaggcccga cacccacttg cttctcagct cgcactcccc
     5041 tgctcctacc tgggtgtggt cgcgtcttct gacctcactc cagacgagct ctgctttctg
     5101 tccctttttg cagaggaagc agaccctcac ttttggagaa cagtgtcccc tgggcgcccc
     5161 cccagaatcc cagcagggac atgccacgtg caccttcccg acccctgcta tggctggtgt
     5221 ggcctgctcc ttcccaccgc acaggtgtga ctgcagcgcc ccttcgccag caccttctcg
     5281 gtgtcatcgg cacatgcatc tctcaggcgt attcctgggg gtcctgctgc cctccccgcc
     5341 cccagcaccg actcaggccc acatggagaa cagaggtgct cagagcacag ccacctgagg
     5401 acgcaagagg gcttttcacg tgcctctcgc tcaggatggc gagattcttc acacacagtg
     5461 tttgttcttc tgtgtcagac aggagagaca cctcaactat gttgttttta tttggataaa
     5521 attttcactt ttctttgaca gtcatttgag aaatttgcac agacaaatgc aagtagcttt
     5581 ttactattta atctacatag agaattcaaa tgtcattaaa aatttttaat tgcagtaaaa
     5641 tacacataaa attggccatc ttaaccgttt ttcagtgtac agtccagtgg cattaggtac
     5701 attcacactg ttgtgcaaac accaccaccg tcatctgcag aacacttttt atctctgcaa
     5761 acagaaactg tccccattaa acactgattc cccttcccca tccaccagcc cctggccccc
     5821 accatctact ttgtctccgt ggatctgact gctgtagaca caccatgtaa ctggaatcat
     5881 aaagtagttg tcttttcacc cgtgttgtag catcactcag gatttccttc acttgtgagc
     5941 tgaatagtgt tccattgtgt ggttggacca cattctgttt gtctgttgat gggcacttgg
     6001 gttgcttcca cctttgggct gctgtcaacc tggtgtacac atctctcttc tagataaagg
     6061 tttcgtttcc ttttgaatgt atacccagaa gtggaattgc tggatcatgt gctaattata
     6121 tagttagtat tttgaggaac caccatacta ttttccatgg tgggagtgta aaatggtgca
     6181 gcctctaaca gtgcccaggg gctccaattt ctctacatcc tcaccaacac ttgctatctt
     6241 gtggggttgg gctttttttg cttgtttttt atagtagttg tccacatggt tgggaggtga
     6301 tatctcatta tggctttgat tttcatttcc ctgatgagaa gtgatgttga gcatcttctg
     6361 tgcttgttgg ctgtttatgt gtctttcttg gggaaatgtc tattcaggtc ctttgccctc
     6421 tttttaattg agttgtatgt ggctttgttg ttgaatatag aaagaactac tacaactctg
     6481 gacactaagt ccttaccatc tagacaactt gaaaatgttc tctccgattc cctaggttgc
     6541 cttttcactc tgttgattgt gtccttggat gcacagaggt ttttaatttt gatgtccact
     6601 ttctctattc ttttttttgg tgcctgcaca ttttgtgtca tatccaggat ttcatttgcc
     6661 aaatccagtg tcatgaagct ttctccctat gttttcttct aagagtttta tagttttaat
     6721 tcttgcacga ggcataataa ggtaaggatc caacttcatt cgtttgcatg tggatatgtg
     6781 gttttcccag caaagtgtgt tgactgtcct ttccctactg aatggttttg gcacccttgc
     6841 tgaaaatcat ttgaccaaat atgccattat gacttgggtg gggattgtat tgactctata
     6901 gattgctttg ggtggaagtt ttccaatcca tgaacatggg atgtcttcca cttatttgtg
     6961 tctttttctt tcagcctttt tcactcagtg cattcctaag tgttttattc tttttgttgc
     7021 cattaaaaat ggaattttct taatttcctc tttggatttt tcattgttat tgtatagaaa
     7081 tgcaactgat gtttgtatgt tgattttttg ttgtcgtctt taggattttc tacatgtaag
     7141 atcatgccac ctgcaaacag aaaattttaa tacttccttt ccaatttgga tgctttcttt
     7201 ctttttcttg cccagatggc tctgtctggt gcagacttcc aatctgtgtg gaacagaagt
     7261 agtgagagtg ggcattttgt cttgttcctg atcttagagg aaaagctttc agtctttcag
     7321 cattgagagg atgtcagctg ggacttttta tatggctgta taatgttggg gcagtttcct
     7381 tctattcaga attagttgag tatttccatc gtgaaagggt gttgaatttt gtcaactgct
     7441 ttttctgcat caattgaaat ggtcatgttt ttcctttgtt ctgtgtataa taacgtgtat
     7501 taaattgatt gacctaatgg tg
//
LOCUS       XM_032618184            7495 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus F-box protein 25 (FBXO25), transcript
            variant X4, mRNA.
ACCESSION   XM_032618184
VERSION     XM_032618184.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7495
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7495
                     /gene="FBXO25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 26 long SRA reads, 9 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746654"
     CDS             127..1203
                     /gene="FBXO25"
                     /codon_start=1
                     /product="F-box only protein 25 isoform X4"
                     /protein_id="XP_032474075.1"
                     /db_xref="GeneID:116746654"
                     /translation="MPFLGQDWRSPGWSWIKTEDGWKRCEPWSEGLEGENDRCGASHG
                     TILNSEDEEIFNNEEHEYASKKRKKDHFRNDKNTQCFYREKWIYVHKESTRERHGYCT
                     LGEAFNRLDFFSAVQDARRFTYVARLLQLIAKSQLTSLSGVAQKNYFNVLDKIVQKVL
                     DDHQNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWVCRLETILNWQQQLQNLQM
                     TEQVDSGLTLSDLPVHMLSNILYRFSDGWDIVTLGQVTPTLSALSEDRRLWKKLCQYH
                     FGEKQFCRHLILSEKGHIEWKLMYFALQKHYPTKEQYGDTLHFCRHCSILFWKDSGHP
                     CTAADPDSCFTPVSPQHFIDLFKF"
     misc_feature    805..939
                     /gene="FBXO25"
                     /note="F-box domain superfamily; Region: F-box_SF;
                     cl45894"
                     /db_xref="CDD:459239"
     misc_feature    order(817..822,826..834,841..846,853..855,889..897,
                     901..903,910..912)
                     /gene="FBXO25"
                     /note="F-box motif; other site"
                     /db_xref="CDD:438852"
     misc_feature    order(817..819,829..831,838..843,850..855,868..870,
                     874..879,889..897,901..903)
                     /gene="FBXO25"
                     /note="Skp1 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438852"
ORIGIN      
        1 cgcggcgctc ccgggtaggc ggtgggcgat ttccggcaat aaatccggac gggccgccgt
       61 caggtgccgg ctgggggttg tcagtgcgcc aggtggggcc cggaccgtcg gcgcgccagg
      121 agagctatgc catttttggg ccaggactgg agatctcctg gatggagctg gattaaaaca
      181 gaagacggct ggaaaagatg tgaaccctgg agtgagggac ttgaaggaga gaatgaccgg
      241 tgtggcgcca gccacggcac tatcttaaat agtgaagatg aagaaatatt caataatgaa
      301 gagcatgaat atgcatccaa aaaaaggaaa aaggaccatt ttagaaatga caaaaatact
      361 cagtgttttt atcgtgaaaa atggatctat gtccataaag aaagcacaag agaaagacac
      421 ggctactgca ctttgggaga agcttttaac cgcttagact tcttcagtgc ggtccaggac
      481 gcccggaggt tcacttacgt ggccagactg ttgcagctga tcgcaaagtc ccagctgacc
      541 tcgctgagcg gtgtcgccca gaagaactac ttcaacgttc tggataaaat cgttcaaaaa
      601 gttctcgatg accaccaaaa ccctcgccta atcaaagatc ttctccaaga cctaagctct
      661 accctttgca ttctaattag aggagtgggg aagtctgttc tggtgggaaa tatcaacatt
      721 tgggtttgcc gattagaaac tattctcaac tggcaacagc agctacagaa tcttcagatg
      781 actgagcagg tggacagcgg cctgacgctc agcgaccttc ccgtgcacat gctcagcaac
      841 atcctgtaca ggttctcgga tgggtgggac atcgtcactc tgggtcaggt gaccccgaca
      901 ctgtccgcgc ttagcgagga ccggcggctg tggaagaagc tctgccagta ccacttcggt
      961 gagaagcagt tttgtagaca cttgatcctt tcagaaaaag gtcatatcga atggaagttg
     1021 atgtattttg cacttcagaa acattacccc actaaggaac agtacggaga cacactgcac
     1081 ttttgtcggc actgcagcat cctcttttgg aaggactcgg gccacccctg cacggctgct
     1141 gaccctgaca gctgcttcac gcctgtgtcc ccgcagcact tcatcgacct cttcaagttc
     1201 taagggccca accgtgccgt ggtctgggca gcgtggtagg acgcgtcctc cgtgaccgag
     1261 ccgtgacctg gtgcccaggc tggagggcgt ggagggacgt ggaaaagtgc cctggcacct
     1321 gcgggcggga gcatctgttg tttccaccca tgaagtgggg ccagggagcc caaggaaaat
     1381 catttctact tccttcttta aaaaatgctt ttcttctaag cgcattaaaa tgtgcaactt
     1441 tgcatgtttg tgaatgtggt tcagaaagag tctgtatttt cagcaccgca tcctgtgctg
     1501 aactgacact aacagccaag catacgcttc ttaattgtca aatgatagtt tcctgatttt
     1561 gtagtgatcg ggggcgggga tagatcattg atccttgtaa ggacattgtg cagaatattt
     1621 atttttcttg agatgtattt tgactgtatt ggtcgtgtcc atatgaatac tcttgggtac
     1681 agaaggaacc cagggaagta tgtgcatgtc ttctgggtgc tcagcgtggg gttgtgaatt
     1741 gtgcagacat ccgagaccca caaaggcgtg agtctggggc tgtgatcctg ggctcatggc
     1801 ccgatgctgg caggcagggg ccctgacctg ggggccagcc cagtgtgacc tgcactgtag
     1861 tgctctgaat ccccgtttgc aggcgaagta ataagtctcg tttatctacc gattttaact
     1921 tcatcagttt tgcatcttac ggaaggaagt agtatcaatg attttgatat catttattga
     1981 aacctttcaa acattgtttt atttttaaaa atactgcatg tacgttttag aagattttga
     2041 aaataaaggt ttataaaaga ataaaacttg catataaccc tgccacccag agatagctgt
     2101 gcttaccaga aggaatgcag gaatggcccc ggcaggtgta ggggagactg aacagggtca
     2161 aggacccaag caaagtcatt tctacttcct tcttagcaca tggaaatttg ctgttttgca
     2221 tatttgtaaa taaagagtgt attttcacta cattgtgctg aactgacaca gccaagacta
     2281 tgcttaattg tcaaatgata gtttccctct gtgtgtattg ggtgaaagct tttcataaaa
     2341 ccgtaaacat catatatact gttttcattt tataaccagc ctttttttca aaagtgtttg
     2401 tgaaaataat ggtttttact ggcgacctgg taccacacag ctggaacaga tcactttgtg
     2461 atcagcatca ccacatgtgc acctttgtgc atctgatgat cttacgataa acgagaagca
     2521 gaaccaggga aacgagtcag ttgtttgtaa ggatgtttcc agagcactgg cgaggatgga
     2581 aggcggcatc tttctccccc gaagatggac gtgaagaggc tgtgaggtag gacatgtctt
     2641 ctgaaagctt attggcgagt tgtttctgta ttttttttaa tatataaatt tatttatttt
     2701 tggctgagct gggtcttcgt tgctgcgcgc gggctttctc tagttgcggc gagcgggggc
     2761 tactcttcgt tgcggtgcac gtgcttctca ttctggtggc ttctcttgtt gcagagcacg
     2821 ggctctaggc acgtaggctt cagtgtttgc agcacgcagg ctccgtagtt gtggcacatg
     2881 ggcttagctg ctctgcggaa tgtgggatct tccccaacca gagctcgaac ccgtgccccc
     2941 tgcgttggca ggcgggttct taaccactgc accactaggg aagccctgta ttttgttttg
     3001 ctttggcaaa ttacctaatt gggttctttg cctgttttac tttttgggtg ttagtctttt
     3061 ttgtataagt ttcttcttag gaggacgtta acctcttgaa gtgagttttt tccccagata
     3121 acattaaaag tcttgggaga agagtccagc tgttccccct gttaattagc ccgtttccag
     3181 aggcagcaga tgtgcttgga cccaaaacca cacacaggca ttggcaaaac ctatagcagg
     3241 tgtgcctgag gcccgcagca ctgggagggg gcgtgagcag gatacatttg ggggcaggca
     3301 gagagttcca ggcacacagt tcctgggtcc tgatcactca tttacggaag atcagatgac
     3361 gtgaacagga agagagggat cgtcctgagc tgcaggttca tgtgtcattt ctgagtgtgg
     3421 ttccctcagc gggctcacca gactcgggct gcacggtgtc actccccacg atgcgtcatc
     3481 tgcacgccct ctaccctctc agcacggcca ggagcgggcc cagagctgcc cctgcgggaa
     3541 ctgccaccct caggaagtgg catctggaag tctgtggcgt cttcctttgc cttgaggtac
     3601 attttctccc ccgggttgtg actcatgggc caggaggagc cacattaggt tctgcagcag
     3661 gtcccggtgc tagtctggga gtttcatggc atctgttgtg cgtttgctca gggctgtcca
     3721 tggagaacca tgtctccttt agggacagta ttgaaggatt tgatgttatt tctgctgtaa
     3781 atgctgcttt aagaatcata tagattctaa caaacataca gaatcaaaca aaatgctcat
     3841 gtaaggtgtt tgtatactga ttttgtatcc tgtaactttg ctgaaatcac taattaaacc
     3901 tagcggtaat ttttgtagat tccttaggac gtggatatac atcgtgtcct ctgcaaatag
     3961 aggtggcttt tcacctttcc ttctttcttc cctccctccc tccctccttc cctctctcct
     4021 ctccttccca gctttccggc cagaccccca tgcacgtgga tggcagtgca cacacatcct
     4081 agcatgttcc tgggaggctc cctgcccttc gcctgtgggt gtggtgcatg ctgggcctct
     4141 gtggacgcct gtatcagggt gaggtgctcc catccagcct cgctttgttg acgtgttttt
     4201 tttttttttt aaccatgaaa ggatgttaga ttttgtcgag tgctctttct acatctacag
     4261 aggtggtcgt gtgttgactt ttgtatgttg aacccacctt gcattttcag gcccacgtcc
     4321 catgtggttt ccatacacag ttggtgagtt tagtttgctg gttttactga gcattttcac
     4381 aagagagatt agctgtgctt ttctggtgag tctttgtctg gttttggtat cagggtgaaa
     4441 acagcctcct agaaggagct tgcctcggga gcgttccctc ccattttctg ggaagggttt
     4501 gtgaagaatt ggtgtgtgtc ctcctttaag cattaggata attccttgga aactgaagtt
     4561 actgaggaga agcgtctgtt ttcagtttag tgacatcctc ccttttggaa aatcctttgc
     4621 ctttaacggg atagagtagt tttgtcttag ttgagacgta tcttggttag agctcatttt
     4681 cttcatcatg ggccctaacc tagcaataaa cgggctgtaa acttcatctg ctgctttcct
     4741 ccatagttac agaaggaagt gtgctgaaaa ccatagatga aaaggcagaa gctgtcttgg
     4801 cttatgacat ttctttcttt cattaacggt gtgagaaaat gcatatgctt cactcctctc
     4861 cctttcctgt attccccacc aaacgcagca tcacccccac ccggtgagat acccaaggat
     4921 ctgcaaacct gggaggaccc agtgatttcc tgctgccgac acctgctcgg ctgaaaggcc
     4981 cgacacccac ttgcttctca gctcgcactc ccctgctcct acctgggtgt ggtcgcgtct
     5041 tctgacctca ctccagacga gctctgcttt ctgtcccttt ttgcagagga agcagaccct
     5101 cacttttgga gaacagtgtc ccctgggcgc ccccccagaa tcccagcagg gacatgccac
     5161 gtgcaccttc ccgacccctg ctatggctgg tgtggcctgc tccttcccac cgcacaggtg
     5221 tgactgcagc gccccttcgc cagcaccttc tcggtgtcat cggcacatgc atctctcagg
     5281 cgtattcctg ggggtcctgc tgccctcccc gcccccagca ccgactcagg cccacatgga
     5341 gaacagaggt gctcagagca cagccacctg aggacgcaag agggcttttc acgtgcctct
     5401 cgctcaggat ggcgagattc ttcacacaca gtgtttgttc ttctgtgtca gacaggagag
     5461 acacctcaac tatgttgttt ttatttggat aaaattttca cttttctttg acagtcattt
     5521 gagaaatttg cacagacaaa tgcaagtagc tttttactat ttaatctaca tagagaattc
     5581 aaatgtcatt aaaaattttt aattgcagta aaatacacat aaaattggcc atcttaaccg
     5641 tttttcagtg tacagtccag tggcattagg tacattcaca ctgttgtgca aacaccacca
     5701 ccgtcatctg cagaacactt tttatctctg caaacagaaa ctgtccccat taaacactga
     5761 ttccccttcc ccatccacca gcccctggcc cccaccatct actttgtctc cgtggatctg
     5821 actgctgtag acacaccatg taactggaat cataaagtag ttgtcttttc acccgtgttg
     5881 tagcatcact caggatttcc ttcacttgtg agctgaatag tgttccattg tgtggttgga
     5941 ccacattctg tttgtctgtt gatgggcact tgggttgctt ccacctttgg gctgctgtca
     6001 acctggtgta cacatctctc ttctagataa aggtttcgtt tccttttgaa tgtataccca
     6061 gaagtggaat tgctggatca tgtgctaatt atatagttag tattttgagg aaccaccata
     6121 ctattttcca tggtgggagt gtaaaatggt gcagcctcta acagtgccca ggggctccaa
     6181 tttctctaca tcctcaccaa cacttgctat cttgtggggt tgggcttttt ttgcttgttt
     6241 tttatagtag ttgtccacat ggttgggagg tgatatctca ttatggcttt gattttcatt
     6301 tccctgatga gaagtgatgt tgagcatctt ctgtgcttgt tggctgttta tgtgtctttc
     6361 ttggggaaat gtctattcag gtcctttgcc ctctttttaa ttgagttgta tgtggctttg
     6421 ttgttgaata tagaaagaac tactacaact ctggacacta agtccttacc atctagacaa
     6481 cttgaaaatg ttctctccga ttccctaggt tgccttttca ctctgttgat tgtgtccttg
     6541 gatgcacaga ggtttttaat tttgatgtcc actttctcta ttcttttttt tggtgcctgc
     6601 acattttgtg tcatatccag gatttcattt gccaaatcca gtgtcatgaa gctttctccc
     6661 tatgttttct tctaagagtt ttatagtttt aattcttgca cgaggcataa taaggtaagg
     6721 atccaacttc attcgtttgc atgtggatat gtggttttcc cagcaaagtg tgttgactgt
     6781 cctttcccta ctgaatggtt ttggcaccct tgctgaaaat catttgacca aatatgccat
     6841 tatgacttgg gtggggattg tattgactct atagattgct ttgggtggaa gttttccaat
     6901 ccatgaacat gggatgtctt ccacttattt gtgtcttttt ctttcagcct ttttcactca
     6961 gtgcattcct aagtgtttta ttctttttgt tgccattaaa aatggaattt tcttaatttc
     7021 ctctttggat ttttcattgt tattgtatag aaatgcaact gatgtttgta tgttgatttt
     7081 ttgttgtcgt ctttaggatt ttctacatgt aagatcatgc cacctgcaaa cagaaaattt
     7141 taatacttcc tttccaattt ggatgctttc tttctttttc ttgcccagat ggctctgtct
     7201 ggtgcagact tccaatctgt gtggaacaga agtagtgaga gtgggcattt tgtcttgttc
     7261 ctgatcttag aggaaaagct ttcagtcttt cagcattgag aggatgtcag ctgggacttt
     7321 ttatatggct gtataatgtt ggggcagttt ccttctattc agaattagtt gagtatttcc
     7381 atcgtgaaag ggtgttgaat tttgtcaact gctttttctg catcaattga aatggtcatg
     7441 tttttccttt gttctgtgta taataacgtg tattaaattg attgacctaa tggtg
//
LOCUS       XM_032618185            7492 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus F-box protein 25 (FBXO25), transcript
            variant X5, mRNA.
ACCESSION   XM_032618185
VERSION     XM_032618185.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7492
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7492
                     /gene="FBXO25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 23 long SRA reads, 2 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746654"
     CDS             127..1200
                     /gene="FBXO25"
                     /codon_start=1
                     /product="F-box only protein 25 isoform X5"
                     /protein_id="XP_032474076.1"
                     /db_xref="GeneID:116746654"
                     /translation="MPFLGQDWRSPGWSWIKTEDGWKRCEPWSEGLEGENDRCGASHG
                     TILNSEDEEIFNNEEHEYASKKRKKDHFRNDKNTQCFYREKWIYVHKESTRERHGYCT
                     LGEAFNRLDFFSAVQDARRFTYVARLLQLIAKSQLTSLSGVAQKNYFNVLDKIVQKVL
                     DDHQNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWVCRLETILNWQQQLQNLQM
                     TEVDSGLTLSDLPVHMLSNILYRFSDGWDIVTLGQVTPTLSALSEDRRLWKKLCQYHF
                     GEKQFCRHLILSEKGHIEWKLMYFALQKHYPTKEQYGDTLHFCRHCSILFWKDSGHPC
                     TAADPDSCFTPVSPQHFIDLFKF"
     misc_feature    802..936
                     /gene="FBXO25"
                     /note="F-box domain superfamily; Region: F-box_SF;
                     cl45894"
                     /db_xref="CDD:459239"
     misc_feature    order(814..819,823..831,838..843,850..852,886..894,
                     898..900,907..909)
                     /gene="FBXO25"
                     /note="F-box motif; other site"
                     /db_xref="CDD:438852"
     misc_feature    order(814..816,826..828,835..840,847..852,865..867,
                     871..876,886..894,898..900)
                     /gene="FBXO25"
                     /note="Skp1 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438852"
ORIGIN      
        1 cgcggcgctc ccgggtaggc ggtgggcgat ttccggcaat aaatccggac gggccgccgt
       61 caggtgccgg ctgggggttg tcagtgcgcc aggtggggcc cggaccgtcg gcgcgccagg
      121 agagctatgc catttttggg ccaggactgg agatctcctg gatggagctg gattaaaaca
      181 gaagacggct ggaaaagatg tgaaccctgg agtgagggac ttgaaggaga gaatgaccgg
      241 tgtggcgcca gccacggcac tatcttaaat agtgaagatg aagaaatatt caataatgaa
      301 gagcatgaat atgcatccaa aaaaaggaaa aaggaccatt ttagaaatga caaaaatact
      361 cagtgttttt atcgtgaaaa atggatctat gtccataaag aaagcacaag agaaagacac
      421 ggctactgca ctttgggaga agcttttaac cgcttagact tcttcagtgc ggtccaggac
      481 gcccggaggt tcacttacgt ggccagactg ttgcagctga tcgcaaagtc ccagctgacc
      541 tcgctgagcg gtgtcgccca gaagaactac ttcaacgttc tggataaaat cgttcaaaaa
      601 gttctcgatg accaccaaaa ccctcgccta atcaaagatc ttctccaaga cctaagctct
      661 accctttgca ttctaattag aggagtgggg aagtctgttc tggtgggaaa tatcaacatt
      721 tgggtttgcc gattagaaac tattctcaac tggcaacagc agctacagaa tcttcagatg
      781 actgaggtgg acagcggcct gacgctcagc gaccttcccg tgcacatgct cagcaacatc
      841 ctgtacaggt tctcggatgg gtgggacatc gtcactctgg gtcaggtgac cccgacactg
      901 tccgcgctta gcgaggaccg gcggctgtgg aagaagctct gccagtacca cttcggtgag
      961 aagcagtttt gtagacactt gatcctttca gaaaaaggtc atatcgaatg gaagttgatg
     1021 tattttgcac ttcagaaaca ttaccccact aaggaacagt acggagacac actgcacttt
     1081 tgtcggcact gcagcatcct cttttggaag gactcgggcc acccctgcac ggctgctgac
     1141 cctgacagct gcttcacgcc tgtgtccccg cagcacttca tcgacctctt caagttctaa
     1201 gggcccaacc gtgccgtggt ctgggcagcg tggtaggacg cgtcctccgt gaccgagccg
     1261 tgacctggtg cccaggctgg agggcgtgga gggacgtgga aaagtgccct ggcacctgcg
     1321 ggcgggagca tctgttgttt ccacccatga agtggggcca gggagcccaa ggaaaatcat
     1381 ttctacttcc ttctttaaaa aatgcttttc ttctaagcgc attaaaatgt gcaactttgc
     1441 atgtttgtga atgtggttca gaaagagtct gtattttcag caccgcatcc tgtgctgaac
     1501 tgacactaac agccaagcat acgcttctta attgtcaaat gatagtttcc tgattttgta
     1561 gtgatcgggg gcggggatag atcattgatc cttgtaagga cattgtgcag aatatttatt
     1621 tttcttgaga tgtattttga ctgtattggt cgtgtccata tgaatactct tgggtacaga
     1681 aggaacccag ggaagtatgt gcatgtcttc tgggtgctca gcgtggggtt gtgaattgtg
     1741 cagacatccg agacccacaa aggcgtgagt ctggggctgt gatcctgggc tcatggcccg
     1801 atgctggcag gcaggggccc tgacctgggg gccagcccag tgtgacctgc actgtagtgc
     1861 tctgaatccc cgtttgcagg cgaagtaata agtctcgttt atctaccgat tttaacttca
     1921 tcagttttgc atcttacgga aggaagtagt atcaatgatt ttgatatcat ttattgaaac
     1981 ctttcaaaca ttgttttatt tttaaaaata ctgcatgtac gttttagaag attttgaaaa
     2041 taaaggttta taaaagaata aaacttgcat ataaccctgc cacccagaga tagctgtgct
     2101 taccagaagg aatgcaggaa tggccccggc aggtgtaggg gagactgaac agggtcaagg
     2161 acccaagcaa agtcatttct acttccttct tagcacatgg aaatttgctg ttttgcatat
     2221 ttgtaaataa agagtgtatt ttcactacat tgtgctgaac tgacacagcc aagactatgc
     2281 ttaattgtca aatgatagtt tccctctgtg tgtattgggt gaaagctttt cataaaaccg
     2341 taaacatcat atatactgtt ttcattttat aaccagcctt tttttcaaaa gtgtttgtga
     2401 aaataatggt ttttactggc gacctggtac cacacagctg gaacagatca ctttgtgatc
     2461 agcatcacca catgtgcacc tttgtgcatc tgatgatctt acgataaacg agaagcagaa
     2521 ccagggaaac gagtcagttg tttgtaagga tgtttccaga gcactggcga ggatggaagg
     2581 cggcatcttt ctcccccgaa gatggacgtg aagaggctgt gaggtaggac atgtcttctg
     2641 aaagcttatt ggcgagttgt ttctgtattt tttttaatat ataaatttat ttatttttgg
     2701 ctgagctggg tcttcgttgc tgcgcgcggg ctttctctag ttgcggcgag cgggggctac
     2761 tcttcgttgc ggtgcacgtg cttctcattc tggtggcttc tcttgttgca gagcacgggc
     2821 tctaggcacg taggcttcag tgtttgcagc acgcaggctc cgtagttgtg gcacatgggc
     2881 ttagctgctc tgcggaatgt gggatcttcc ccaaccagag ctcgaacccg tgccccctgc
     2941 gttggcaggc gggttcttaa ccactgcacc actagggaag ccctgtattt tgttttgctt
     3001 tggcaaatta cctaattggg ttctttgcct gttttacttt ttgggtgtta gtcttttttg
     3061 tataagtttc ttcttaggag gacgttaacc tcttgaagtg agttttttcc ccagataaca
     3121 ttaaaagtct tgggagaaga gtccagctgt tccccctgtt aattagcccg tttccagagg
     3181 cagcagatgt gcttggaccc aaaaccacac acaggcattg gcaaaaccta tagcaggtgt
     3241 gcctgaggcc cgcagcactg ggagggggcg tgagcaggat acatttgggg gcaggcagag
     3301 agttccaggc acacagttcc tgggtcctga tcactcattt acggaagatc agatgacgtg
     3361 aacaggaaga gagggatcgt cctgagctgc aggttcatgt gtcatttctg agtgtggttc
     3421 cctcagcggg ctcaccagac tcgggctgca cggtgtcact ccccacgatg cgtcatctgc
     3481 acgccctcta ccctctcagc acggccagga gcgggcccag agctgcccct gcgggaactg
     3541 ccaccctcag gaagtggcat ctggaagtct gtggcgtctt cctttgcctt gaggtacatt
     3601 ttctcccccg ggttgtgact catgggccag gaggagccac attaggttct gcagcaggtc
     3661 ccggtgctag tctgggagtt tcatggcatc tgttgtgcgt ttgctcaggg ctgtccatgg
     3721 agaaccatgt ctcctttagg gacagtattg aaggatttga tgttatttct gctgtaaatg
     3781 ctgctttaag aatcatatag attctaacaa acatacagaa tcaaacaaaa tgctcatgta
     3841 aggtgtttgt atactgattt tgtatcctgt aactttgctg aaatcactaa ttaaacctag
     3901 cggtaatttt tgtagattcc ttaggacgtg gatatacatc gtgtcctctg caaatagagg
     3961 tggcttttca cctttccttc tttcttccct ccctccctcc ctccttccct ctctcctctc
     4021 cttcccagct ttccggccag acccccatgc acgtggatgg cagtgcacac acatcctagc
     4081 atgttcctgg gaggctccct gcccttcgcc tgtgggtgtg gtgcatgctg ggcctctgtg
     4141 gacgcctgta tcagggtgag gtgctcccat ccagcctcgc tttgttgacg tgtttttttt
     4201 tttttttaac catgaaagga tgttagattt tgtcgagtgc tctttctaca tctacagagg
     4261 tggtcgtgtg ttgacttttg tatgttgaac ccaccttgca ttttcaggcc cacgtcccat
     4321 gtggtttcca tacacagttg gtgagtttag tttgctggtt ttactgagca ttttcacaag
     4381 agagattagc tgtgcttttc tggtgagtct ttgtctggtt ttggtatcag ggtgaaaaca
     4441 gcctcctaga aggagcttgc ctcgggagcg ttccctccca ttttctggga agggtttgtg
     4501 aagaattggt gtgtgtcctc ctttaagcat taggataatt ccttggaaac tgaagttact
     4561 gaggagaagc gtctgttttc agtttagtga catcctccct tttggaaaat cctttgcctt
     4621 taacgggata gagtagtttt gtcttagttg agacgtatct tggttagagc tcattttctt
     4681 catcatgggc cctaacctag caataaacgg gctgtaaact tcatctgctg ctttcctcca
     4741 tagttacaga aggaagtgtg ctgaaaacca tagatgaaaa ggcagaagct gtcttggctt
     4801 atgacatttc tttctttcat taacggtgtg agaaaatgca tatgcttcac tcctctccct
     4861 ttcctgtatt ccccaccaaa cgcagcatca cccccacccg gtgagatacc caaggatctg
     4921 caaacctggg aggacccagt gatttcctgc tgccgacacc tgctcggctg aaaggcccga
     4981 cacccacttg cttctcagct cgcactcccc tgctcctacc tgggtgtggt cgcgtcttct
     5041 gacctcactc cagacgagct ctgctttctg tccctttttg cagaggaagc agaccctcac
     5101 ttttggagaa cagtgtcccc tgggcgcccc cccagaatcc cagcagggac atgccacgtg
     5161 caccttcccg acccctgcta tggctggtgt ggcctgctcc ttcccaccgc acaggtgtga
     5221 ctgcagcgcc ccttcgccag caccttctcg gtgtcatcgg cacatgcatc tctcaggcgt
     5281 attcctgggg gtcctgctgc cctccccgcc cccagcaccg actcaggccc acatggagaa
     5341 cagaggtgct cagagcacag ccacctgagg acgcaagagg gcttttcacg tgcctctcgc
     5401 tcaggatggc gagattcttc acacacagtg tttgttcttc tgtgtcagac aggagagaca
     5461 cctcaactat gttgttttta tttggataaa attttcactt ttctttgaca gtcatttgag
     5521 aaatttgcac agacaaatgc aagtagcttt ttactattta atctacatag agaattcaaa
     5581 tgtcattaaa aatttttaat tgcagtaaaa tacacataaa attggccatc ttaaccgttt
     5641 ttcagtgtac agtccagtgg cattaggtac attcacactg ttgtgcaaac accaccaccg
     5701 tcatctgcag aacacttttt atctctgcaa acagaaactg tccccattaa acactgattc
     5761 cccttcccca tccaccagcc cctggccccc accatctact ttgtctccgt ggatctgact
     5821 gctgtagaca caccatgtaa ctggaatcat aaagtagttg tcttttcacc cgtgttgtag
     5881 catcactcag gatttccttc acttgtgagc tgaatagtgt tccattgtgt ggttggacca
     5941 cattctgttt gtctgttgat gggcacttgg gttgcttcca cctttgggct gctgtcaacc
     6001 tggtgtacac atctctcttc tagataaagg tttcgtttcc ttttgaatgt atacccagaa
     6061 gtggaattgc tggatcatgt gctaattata tagttagtat tttgaggaac caccatacta
     6121 ttttccatgg tgggagtgta aaatggtgca gcctctaaca gtgcccaggg gctccaattt
     6181 ctctacatcc tcaccaacac ttgctatctt gtggggttgg gctttttttg cttgtttttt
     6241 atagtagttg tccacatggt tgggaggtga tatctcatta tggctttgat tttcatttcc
     6301 ctgatgagaa gtgatgttga gcatcttctg tgcttgttgg ctgtttatgt gtctttcttg
     6361 gggaaatgtc tattcaggtc ctttgccctc tttttaattg agttgtatgt ggctttgttg
     6421 ttgaatatag aaagaactac tacaactctg gacactaagt ccttaccatc tagacaactt
     6481 gaaaatgttc tctccgattc cctaggttgc cttttcactc tgttgattgt gtccttggat
     6541 gcacagaggt ttttaatttt gatgtccact ttctctattc ttttttttgg tgcctgcaca
     6601 ttttgtgtca tatccaggat ttcatttgcc aaatccagtg tcatgaagct ttctccctat
     6661 gttttcttct aagagtttta tagttttaat tcttgcacga ggcataataa ggtaaggatc
     6721 caacttcatt cgtttgcatg tggatatgtg gttttcccag caaagtgtgt tgactgtcct
     6781 ttccctactg aatggttttg gcacccttgc tgaaaatcat ttgaccaaat atgccattat
     6841 gacttgggtg gggattgtat tgactctata gattgctttg ggtggaagtt ttccaatcca
     6901 tgaacatggg atgtcttcca cttatttgtg tctttttctt tcagcctttt tcactcagtg
     6961 cattcctaag tgttttattc tttttgttgc cattaaaaat ggaattttct taatttcctc
     7021 tttggatttt tcattgttat tgtatagaaa tgcaactgat gtttgtatgt tgattttttg
     7081 ttgtcgtctt taggattttc tacatgtaag atcatgccac ctgcaaacag aaaattttaa
     7141 tacttccttt ccaatttgga tgctttcttt ctttttcttg cccagatggc tctgtctggt
     7201 gcagacttcc aatctgtgtg gaacagaagt agtgagagtg ggcattttgt cttgttcctg
     7261 atcttagagg aaaagctttc agtctttcag cattgagagg atgtcagctg ggacttttta
     7321 tatggctgta taatgttggg gcagtttcct tctattcaga attagttgag tatttccatc
     7381 gtgaaagggt gttgaatttt gtcaactgct ttttctgcat caattgaaat ggtcatgttt
     7441 ttcctttgtt ctgtgtataa taacgtgtat taaattgatt gacctaatgg tg
//
LOCUS       XM_032618186            8116 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus testis development related protein
            (TDRP), mRNA.
ACCESSION   XM_032618186
VERSION     XM_032618186.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8116
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8116
                     /gene="TDRP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 25 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746655"
     CDS             122..697
                     /gene="TDRP"
                     /codon_start=1
                     /product="testis development-related protein"
                     /protein_id="XP_032474077.1"
                     /db_xref="GeneID:116746655"
                     /translation="MWKLGRSRVLLDEPPEEEDGLRAGPPPSVAPAAAAAAAAAAQVQ
                     GASFRGWKEVTSLFNKDDEQHLLERCKSPKSRGTNLRLKEDLKTEKKSGFWDNLVLKQ
                     STQSKKPDEIEGWEPPKLVLEDVAANSGDPMSDRLSGPGWEEDARGSTKYTSLAGAGN
                     SSRWSLRSAGKLVSIRRQSRGHLTDDWEELE"
     misc_feature    263..694
                     /gene="TDRP"
                     /note="Testis development-related protein; Region: TDRP;
                     pfam15683"
                     /db_xref="CDD:464801"
ORIGIN      
        1 cctgggcggc cacagcacct ctaagaaagg agccgcagcc ggtgcgtccg cgctgcgggc
       61 cggccgagga ggggcgcgca cggacgcacg gacgcacgga cgccggcgcc cgcccgggag
      121 catgtggaag ctgggccgga gccgggtgct cctggacgag ccccccgagg aggaggatgg
      181 cctgcgggcg gggccgccgc cctccgtcgc ccctgccgcc gccgccgccg ccgccgccgc
      241 cgcgcaggtt cagggagcga gtttccgagg ctggaaagaa gtgacttcgc tgtttaacaa
      301 ggatgacgag cagcacctgc tggaaagatg taaatccccc aagtccagag gaactaactt
      361 acgattaaaa gaagacttga agacggagaa gaagtctgga ttttgggaca atttggtttt
      421 gaaacagagt acacagtcta agaaaccaga tgagatcgaa ggttgggagc caccaaaact
      481 tgttcttgaa gacgtggcag ccaactcggg cgaccccatg agtgaccgtc tgtccgggcc
      541 aggctgggag gaggacgcca ggggctccac caagtacacc agcctggccg gcgccgggaa
      601 cagctcgcgc tggagcctca ggtcagcggg gaagctggtc agcatccgtc ggcagagcag
      661 aggccacctg acggacgact gggaggagct ggagtgacag ccccactcct gcgagttcac
      721 aaacccagat ctgcctgatt ttgcaccttt gttctcattt cattcagatt cctagagttt
      781 gctgtatcac agtgtgtttt tagtagagta tcaagtttgg tctttctttc ccagatgaaa
      841 actgcagaga atctgccctg tgccgtttta tttggactct cctcttcaaa tgcttactta
      901 ggaaattcct cagtggacac gaacagggac cgcacatcga ctgccttatg tggaaacgtc
      961 ctcctgtcgt ccacgtgttg ctgagactgg agacgtgagg tttgctgctg tccgggagga
     1021 gcgcagtggt aatttgcatt ttgccacaaa accgtcttcc tgtgtcctcg gttgcagttc
     1081 tttgttctgt gtcttgatcc ctttctctgc atgtagcaca tacgtgtagt ctatgacaca
     1141 agaatgtagc agctgcgcac ttctcttctg ttgccagaaa cctgcaatcc aggtgtaaaa
     1201 tgaatcttcc aaaggtcgtg ttacattgtg ttaactcttc ttttgaacta aattttaaaa
     1261 tacgcaagca gaatgagccc tggagaggcg caccgctgag tgcactgtca gcaagcgcgc
     1321 cctcatcccc agcctcctgt gcgcgcagta gatggtgaca gtggttctaa cctcctcctg
     1381 tacgcgcagt agatggtgac agtggttcta acctcctcct gtgcgcgcag tagatggtga
     1441 cagtggttct tacctcgagg ttttattttt atttctcctg aacttttaaa tattgatctt
     1501 attttcttct aaaactttgt tctctgcttt tgattgcaga ttaaagaatg ctatacataa
     1561 agcatggatc agttttagta acttgacagt taattttgtt tggaaaataa taactcgctt
     1621 gttgagttaa aactgtatgt aaaatgatga aaagtgcctc tcttctctaa cacccagggt
     1681 tttgtttttc caaatgagag actggctggt ttgggcacgt cactgaggca tctcgtgtgt
     1741 ctccagactt gctttctgcc tccctgatag actggcccct tggtcaggta cccgtgcacg
     1801 tgtgtcctta gcaggacagc tctgatccac gggagtacgt gtctatctca ggtcacggtg
     1861 gcttcacaga gaaggtatag gggttttttg gttaaaaaca aaaacctcca gttacactgt
     1921 gcattcctct ctttaaaagc cactgtcctc agtgttcagt tctgtgctgt tcgacataaa
     1981 ggagtgtcat ttagcatttc tgtggactcc ggggggtgac agtgtctgcc tgtcatctgt
     2041 catttctcaa tcagtcatct gtctacactc tgtcatctcc agccatctat gtacaatgta
     2101 tacctgtcct ctaaccatct ctctctctct gtctgtgtag cgtccatcag tcatctatgt
     2161 ccatcttttt ctaagagaca agaagtttac ttcactgagc cttgaaaggg ggacatgtaa
     2221 gtggtggtaa aatccagttt gcattagaac cttgaaatgg ttaataccgg aactgaaaac
     2281 cgcgtttcct cgggtagaca gttcagtaca tagactgtag tccttctccc taaagagacg
     2341 cttgctgtgg ctgcagacga gcttacgcga ggattttaaa gcaggagccg cgggcttgtc
     2401 ttgggctaat cctgtgttga ggtgcaggga ggcagacctc gtgtccgagg ctctaggcag
     2461 ggagctcagc gcggtggtgg ggacagcgtc ctcactgggg agcctgtgcc cgtgtgctgc
     2521 gacgctcagt gcctgtgaca cacccgtggt gcacagccgg cagaacagct cttcatacca
     2581 ctgttcctta aaaccagacc ggggctggaa tatgcacaga aatcacactt atgtacaaag
     2641 gttaacgtaa aaatgaattt ttcttctgtt gtatctgatt aaacaaaaat atttgtgggt
     2701 tttaatataa atatttattg gtatgctttg gggaaaagat attttttctt catagaattt
     2761 accgaagcat ctttgttttg ttcactggct gatgagagaa gaggtttgtt tgaattctgt
     2821 aaaaacatag cttctctgtg tgaagagtga agtgtctgct ctttcagctg tcgtttttaa
     2881 cagaaaagtg attggcttca aagaaggttg aattcttaat gctgaggttt tttaaaataa
     2941 aacatgcttt atgtactctg actgttagtt tgcacggtta ctggcatccg cttccggtga
     3001 ctcagtcact cagagctgat ggtacccgtc tcgacacctt caacctcatt taagatgccg
     3061 acaaaatgcg tagactcata aataaacgac cgacttcaac ctcagctgtc aggatgtatc
     3121 ttttgtgtat ttgaatggac gctctttggg aacagcaggc gctgcgcctg ccctgccctg
     3181 ggccccgctt ccgatttact gcagtgactt cacgagttag agcctgaagc aagcctcccc
     3241 tcagcaccca gctgacagga gtacgttctt cacttaatca tcttcatcct gtaaaaagtt
     3301 tccatctgtt tttcccaaac agtggcctct tccggagaga aaccctgacc tcccttaggg
     3361 actggatgac cacgatgccg tctcaagcca gaccacgaca tggtgtatgg attgtgcctg
     3421 gcctgctgca ggggctcagc cgatactaag gtaggtgtga aatgtgggca tggggatgac
     3481 aagttccctc cctcctcacc tgcctgcagt tgcctctctc cgcctgcagg aatgtgtgtc
     3541 tggggacttg cttctgtaca aatccaccgc tttgtgctgg ggtctgatac tcaagagtcc
     3601 tttctctggg tatcggccaa gtttctgatt ctgtcccagg cctctgtcat ctgtcttctg
     3661 gtcgccagtc tccctccagg gtctttggcc tcagtgaagt ggtggacaag tttatataat
     3721 tagaagttaa tgtctcagca tgacttttca gaattgcaga atttagtgat aaaggcaggg
     3781 tagaatttta gctttcaaga gttgaataaa tctggaaggg ggtggtgatg ggaaaaatat
     3841 catttgcttt gagttttctt tttgagaagt atttttttct ttagaggcta gggtttcaaa
     3901 attctcttct ccctagaaac ttagaactgg ctgagtaagc tagcaggagg atgccaagaa
     3961 tttttgttct gtaagaaatc tccaaagctc aacatgcaga agcgcctgga agaccagttt
     4021 cccttgggaa ccagtgagca ggacccagat gagggcgttg ctctccccca ggagatacgc
     4081 agctctattc tagtacttcg ctgtttctct cactttataa ttttgggtgc ttacaggtct
     4141 tcaaaaggca atgtgagata aaatactgga aagatatcaa aatttaagta attaccttga
     4201 agtagaatta tgggtagcat tttgtttttt gtatattggc tttttaacaa aactttttac
     4261 agtgaatata cattactttt gtgataaaaa aacagggcga cgaatgttga aaaagtaaca
     4321 cctcagtttt taaatggaaa atagcaaaca tatccaaaag aagaaacaaa attatataaa
     4381 tcatgggttg gcacactaca gcctagtgga caaatgtggc cgtcccccct gtacttactt
     4441 atgtggcata caagttaaga atgtttacat tttcaaatgg tagaacaact taaaagaata
     4501 atatactgtg acacatgaaa tcccacagag tttaactgga acacttgcta tcagtgtccc
     4561 ccccacgcag tccaagtctg agttacggta tagattgtct atggctgcaa gagagaatgt
     4621 gggccctgaa aagccaaaaa tacttaacac ctgcctcctc acagaaaatc tgctgaaccc
     4681 tggtgaaaac tccttcatgt acacatcctt cccctctaca gttttcagct cctggccaat
     4741 cttgtttttg tctttagtca ccccctagcc tcaaccaaga gaattaatta tgttaaagta
     4801 aatcccataa tcctgtaatt tcatcatctt catgttgttt aaatttaaaa gttgagaatt
     4861 taccaagaag atgtaataat cataaacgta catgaacaaa cattagagct tctaaacata
     4921 cgaagcaaac actgaggaaa gaagagccag ctctatatta cagtaggaga ccccaatacc
     4981 ccacttcaag aagagacaat atccaccatt aggtcaatca atttaataca cgttattata
     5041 cacagaacaa aggaaaaaca tgaccatttc aattgatgca gaaaaagcag ttgacaaaat
     5101 tcaacaccct ttcacgatgg aaatactcaa ctaattctga atagaaggaa actgccccaa
     5161 cattatacag ccatataaaa agtcccagct gacatcctct caatgctgaa agactgaaag
     5221 cttttcctct aagatcagga acaagacaaa atgcccactc tcactacttc tgttccacac
     5281 agattggaag tctgcaccag acagagccat ctgggcaaga aaaagaaaga aagcatccaa
     5341 attggaaagg aagtattaaa attttctgtt tgcaggtggc atgatcttac atgtagaaaa
     5401 tcctaaagac gacaacaaaa aatcaacata caaacatcag ttgcatttct atacaataac
     5461 aatgaaaaat ccaaagagga aattaagaaa attccatttt taatggcaac aaaaagaata
     5521 aaacacttag gaatgcactg agtgaaaaag gctgaaagaa aaagacacaa ataagtggaa
     5581 gacatcccat gttcatggat tggaaaactt ccacccaaag caatctatag agtcaataca
     5641 atccccaccc aagtcataat ggcatatttg gtcaaatgat tttcagcaag ggtgccaaaa
     5701 ccattcagta gggaaaggac agtcaacaca ctttgctggg aaaaccacat atccacatgc
     5761 aaacgaatga agttggatcc ttaccttatt atgcctcgtg caagaattaa aactataaaa
     5821 ctcttagaag aaaacatagg gagaaagctt catgacactg gatttggcaa atgaaatcct
     5881 ggatatgaca caaaatgtgc aggcaccaaa aaaaagaata gagaaagtgg acatcaaaat
     5941 taaaaacctc tgtgcatcca aggacacaat caacagagtg aaaaggcaac ctagggaatc
     6001 ggagagaaca ttttcaagtt gtctagatgg taaggactta gtgtccagag ttgtagtagt
     6061 tctttctata ttcaacaaca aagccacata caactcaatt aaaaagaggg caaaggacct
     6121 gaatagacat ttccccaaga aagacacata aacagccaac aagcacagaa gatgctcaac
     6181 atcacttctc atcagggaaa tgaaaatcaa agccataatg agatatcacc tcccaaccat
     6241 gtggacaact actataaaaa acaagcaaaa aaagcccaac cccacaagat agcaagtgtt
     6301 ggtgaggatg tagagaaatt ggagcccctg ggcactgtta gaggctgcac cattttacac
     6361 tcccaccatg gaaaatagta tggtggttcc tcaaaatact aactatataa ttagcacatg
     6421 atccagcaat tccacttctg ggtatacatt caaaaggaaa cgaaaccttt atctagaaga
     6481 gagatgtgta caccaggttg acagcagccc aaaggtggaa gcaacccaag tgcccatcaa
     6541 cagacaaaca gaatgtggtc caaccacaca atggaacact attcagctca caagtgaagg
     6601 aaatcctgag tgatgctaca acacgggtga aaagacaact actttatgat tccagttaca
     6661 tggtgtgtct acagcagtca gatccacgga gacaaagtag atggtggggg ccaggggctg
     6721 gtggatgggg aaggggaatc agtgtttaat ggggacagtt tctgtttgca gagataaaaa
     6781 gtgttctgca gatgacggtg gtggtgtttg cacaacagtg tgaatgtacc taatgccact
     6841 ggactgtaca ctgaaaaacg gttaagatgg ccaattttat gtgtatttta ctgcaattaa
     6901 aaatttttaa tgacatttga attctctatg tagattaaat agtaaaaagc tacttgcatt
     6961 tgtctgtgca aatttctcaa atgactgtca aagaaaagtg aaaattttat ccaaataaaa
     7021 acaacatagt tgaggtgtct ctcctgtctg acacagaaga acaaacactg tgtgtgaaga
     7081 atctcgccat cctgagcgag aggcacgtga aaagccctct tgcgtcctca ggtggctgtg
     7141 ctctgagcac ctctgttctc catgtgggcc tgagtcggtg ctgggggcgg ggagggcagc
     7201 aggaccccca ggaatacgcc tgagagatgc atgtgccgat gacaccgaga aggtgctggc
     7261 gaaggggcgc tgcagtcaca cctgtgcggt gggaaggagc aggccacacc agccatagca
     7321 ggggtcggga aggtgcacgt ggcatgtccc tgctgggatt ctgggggggc gcccagggga
     7381 cactgttctc caaaagtgag ggtctgcttc ctctgcaaaa agggacagaa agcagagctc
     7441 gtctggagtg aggtcagaag acgcgaccac acccaggtag gagcagggga gtgcgagctg
     7501 agaagcaagt gggtgtcggg cctttcagcc gagcaggtgt cggcagcagg aaatcactgg
     7561 gtcctcccag gtttgcagat ccttgggtat ctcaccgggt gggggtgatg ctgcgtttgg
     7621 tggggaatac aggaaaggga gaggagtgaa gcatatgcat tttctcacac cgttaatgaa
     7681 agaaagaaat gtcataagcc aagacagctt ctgccttttc atctatggtt ttcagcacac
     7741 ttccttctgt aactatggag gaaagcagca gatgaagttt acagcccgtt tattgctagg
     7801 ttagggccca tgatgaagaa aatgagctct aaccaagata cgtctcaact aagacaaaac
     7861 tactctatcc cgttaaaggc aaaggatttt ccaaaaggga ggatgtcact aaactgaaaa
     7921 cagacgcttc tcctcagtaa cttcagtttc caaggaatta tcctaatgct taaaggagga
     7981 cacacaccaa ttcttcacaa acccttccca gaaaatggga gggaacgctc ccgaggcaag
     8041 ctccttctag gaggctgttt tcaccctgat accaaaacca gacaaagact caccagaaaa
     8101 gcacagctaa tctctc
//
LOCUS       XR_004347824            1065 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746657
            (LOC116746657), ncRNA.
ACCESSION   XR_004347824
VERSION     XR_004347824.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1065
                     /gene="LOC116746657"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746657"
     ncRNA           1..1065
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746657"
                     /product="uncharacterized LOC116746657"
                     /db_xref="GeneID:116746657"
ORIGIN      
        1 ttatacagct gagcgatccg gttccatctt tgccctgcct accactctcc cccaggggcg
       61 ttggggcaat tccagatgtg gtactgttgc atccacccta aggatctctg aaagatggga
      121 gtcaacagat tttatagagc agacccattg tttctgttga atccccacta agcctacgga
      181 ctggacacac gcttccagct ggtcgtcaca ctggggtctg aaaggcggag cagccaccag
      241 actgtcagcc caggagctcc actgagtgaa ggtgaggagg gctgaggctg cctcctcacg
      301 tctccttgcc tatgatgagc tgactctccc tgcaccttat cctcctggac ccagcacctc
      361 ctttggagtc cgatgtccac tgctccaact caagtccacg ttctagaaca ccatgctgct
      421 tcttgctgtt taaacagatg attgtccagt aggaagtttc agtcgcagct gcttcctgct
      481 ttgaatccca gcctcacaga gtttatttaa gtaagatttt tctcaacccg tgaagcacaa
      541 ttccgaaggc acagaggaga agcaatgtct gcacctcatc tgcacaatgt ggtcgagtgc
      601 caagtgccac agaatgtccc gcagaggcca cgggggagtg acccttgggg aaacggtgct
      661 ccaagcttga tgtactgtaa cgttgtagga aagagaaaga agtgccacaa atgagaaaat
      721 acaaacgcgg tcttgtcacg gatggagcta gtgtaaccct gggagacagg aggctgcgga
      781 agagcctcct ggggaggggt cggaggtact gagacggctg aagaatagaa ggaagaagat
      841 acagacgcag aaatgccctc tggccgagtc agcaaggagg gcaccgccag tgaactccag
      901 ttcctggccg atccacgggt gacggctgtg ctgtggcttt ggcgtgggga cttctgacag
      961 ctgtgctgac gaggacagtg tgtggctctc ggggacacgc acagtgcacc gggctctgcc
     1021 caagtccgac gaagactgat caccgtgcac tcagccgtca ctaca
//
LOCUS       XM_032618187            2561 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X1, mRNA.
ACCESSION   XM_032618187
VERSION     XM_032618187.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2561
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2561
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             188..2104
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X1"
                     /protein_id="XP_032474078.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPV
                     SPASSGRLSTTAPPGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEF
                     SHFSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGE
                     KHLFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLV
                     SNVRFSDTLRILTCDISQNKQRVENFNHTSTSEGRPTTERLKLQLAKEEQLLTLDKIV
                     ETIEGFQCSPYPEIDQFVLLLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGR
                     AHKSNNIMILVDLKNEVWYQKCHDPICKAENFKSDCFPLPAEVRLLFLLKEEEEFTTD
                     ETRDNETKNPHEPSSSASSKGTFSDADWDNGIDDAYILEATEDAELAEAAENSLLGYN
                     GIDEIPDELIIEVL"
     misc_feature    1643..1837
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1895..2101
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1958..1978,1982..2014)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(2069..2080,2084..2095)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 tctccccact tcccgccccg gccccgcctc cgcgccaggt ttgaagactc ggtcccgcca
       61 cagtgggcgg cttgtgtgtc ctgccagccg cagaggaccc acggcttccc gcccacgacg
      121 agcgtctctg gagtaattca cagagatcct acctgggata ggatttagtc tccccatact
      181 tctaccaatg aagagaaaat gggaagcaag gctgaagcaa attgaagaac gagcatccca
      241 ttatgagagg gaaccattgt ccttggtata cagaccaaga ttgtctaagc cagaagaacc
      301 accatccatt tggaaactat ttcatcggca aactcaagct tttaattttg ttaaaagttg
      361 taaagaggac gttcatgtat ttgctttgga atacaaagtg ggcgatggac aacgtattta
      421 cctcgtaaca acgtatactc aactttggtt ttactataaa tcccgaagaa atctcttaca
      481 ctgctatgaa gtcattcctg aaaatgctgt gtgcaagctt tattttgatt tggaatttaa
      541 cagacttgcc aatccaggag ctgatgggaa aaagatggtt gcattactca ttgagcatgt
      601 ttgtaaggca cttcaacagt tttacagggt tcgttgttca gctgaagatg ttctcaactt
      661 ggattctagc accaatgaaa aatttagccg ccatttaata tttcaactcc atgatgtggt
      721 atttaaagat aatattcatg ttgagcacag gctccggacg tgcaggctca ggggccatgg
      781 ctcacgggcc cagctgctcc gcggcacgtg ggatcttccc agaccggggc atgaacccgt
      841 gtcccctgca tcgtcaggca gactctcaac cactgcgcca ccagggaaga ccaacaactc
      901 agttttaaaa ccagaaatcg aaagtaattt tgtgagaaaa atgttagagc ctgcttttca
      961 cttaattgct agtgaagatg atgatatgac tccagagaca atgggccatg aattttccca
     1021 tttttctgaa acaccagtta aacaaggaat ttcctttagc aaaaagtcca cagataagga
     1081 tatggaagag agctggacaa cgaattcaaa gaaactggag aggctggggt cagctaagca
     1141 aagcagtcct gatctttcat ttttaattgt gatgaataac gtaggagaaa agcatctttt
     1201 tgtagatcta ggagtttata caagaaatag aaactttcga ctgtataaat catcaaaaat
     1261 aggaaagtat gtgcctttgg aggttgctga agataacaaa ttttatcctg tacaatcgga
     1321 gaatatttcc aaagaaaatc aatatttcct ctcttctttg gtcagcaatg tcagattctc
     1381 agatacttta cgaattctga catgtgatat atctcaaaat aaacaacgag ttgagaattt
     1441 taaccatacc agtacttcag aaggaaggcc gactacagag agactaaagc tacaattggc
     1501 aaaggaggag cagctactta cattagacaa gatagtagaa accattgaag gttttcagtg
     1561 ttcaccttac cctgaaattg atcaatttgt tctcttgttg gtgaataaaa atggcattaa
     1621 aggaggaatt cggcgctgga actacttttt cccagaagaa ttattggttt atgatatttg
     1681 taaataccgc tggtgtgaaa acattggaag agcccacaag agtaataata tcatgatttt
     1741 ggttgacctg aaaaatgaag tttggtatca aaaatgtcat gaccctatat gtaaagcaga
     1801 aaacttcaaa tctgactgtt tcccattacc tgctgaagtg cgtctcctgt ttcttctcaa
     1861 agaggaagag gagtttacaa cagatgaaac aagggacaat gaaaccaaga atcctcatga
     1921 accatcctct agtgcatcgt caaaaggtac attttctgat gctgactggg ataatggcat
     1981 tgatgatgct tatattttgg aggctacaga agatgctgaa ttggcagaag ctgcagagaa
     2041 cagtcttctt ggttataatg gaatcgatga aattcctgat gaactaatta tagaagtatt
     2101 ataagagtag ctaattatgg acacttaaat aactaggcgg taatctgctt gaaaacattt
     2161 agtaacaaac tagtaactta caaagcctgt tgtatcagct aagttttatt actttgcttc
     2221 caaatcttat ttattgaagt aaaccagttt tattgaaaat tagctccagt gtgcttcaat
     2281 tcagtatgag tctccttatt tgattaacca gttattagtc tttgttcgta tcagcttaat
     2341 tttgcatgtt tatttttaca gtaaaacttt tttatgtcta gggctgatta ggtgtcaaca
     2401 ttttaaaaca ttttgaaact tattacttga cattaaccag aaaaattaac tatggcctct
     2461 aaaactctat acctaaccat ttaattttaa tgacaaagta atattaaatt ctggtgacaa
     2521 gaccatacaa ccagcctgaa caaatagaca agtttacttt t
//
LOCUS       XM_032618188            2570 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X2, mRNA.
ACCESSION   XM_032618188
VERSION     XM_032618188.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2570
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             197..2113
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X1"
                     /protein_id="XP_032474079.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPV
                     SPASSGRLSTTAPPGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEF
                     SHFSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGE
                     KHLFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLV
                     SNVRFSDTLRILTCDISQNKQRVENFNHTSTSEGRPTTERLKLQLAKEEQLLTLDKIV
                     ETIEGFQCSPYPEIDQFVLLLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGR
                     AHKSNNIMILVDLKNEVWYQKCHDPICKAENFKSDCFPLPAEVRLLFLLKEEEEFTTD
                     ETRDNETKNPHEPSSSASSKGTFSDADWDNGIDDAYILEATEDAELAEAAENSLLGYN
                     GIDEIPDELIIEVL"
     misc_feature    1652..1846
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1904..2110
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1967..1987,1991..2023)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(2078..2089,2093..2104)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 ccgcgctctc cccacttccc gccccggccc cgcctccgcg ccaggtttga agactcggtc
       61 ccgccacagt gggcggcttg tgtgtcctgc cagccgcaga ggacccacgg cttcccgccc
      121 acgacgagcg tctctggagt agtaattcac agagatccta cctgggatag gatttagtct
      181 ccccatactt ctaccaatga agagaaaatg ggaagcaagg ctgaagcaaa ttgaagaacg
      241 agcatcccat tatgagaggg aaccattgtc cttggtatac agaccaagat tgtctaagcc
      301 agaagaacca ccatccattt ggaaactatt tcatcggcaa actcaagctt ttaattttgt
      361 taaaagttgt aaagaggacg ttcatgtatt tgctttggaa tacaaagtgg gcgatggaca
      421 acgtatttac ctcgtaacaa cgtatactca actttggttt tactataaat cccgaagaaa
      481 tctcttacac tgctatgaag tcattcctga aaatgctgtg tgcaagcttt attttgattt
      541 ggaatttaac agacttgcca atccaggagc tgatgggaaa aagatggttg cattactcat
      601 tgagcatgtt tgtaaggcac ttcaacagtt ttacagggtt cgttgttcag ctgaagatgt
      661 tctcaacttg gattctagca ccaatgaaaa atttagccgc catttaatat ttcaactcca
      721 tgatgtggta tttaaagata atattcatgt tgagcacagg ctccggacgt gcaggctcag
      781 gggccatggc tcacgggccc agctgctccg cggcacgtgg gatcttccca gaccggggca
      841 tgaacccgtg tcccctgcat cgtcaggcag actctcaacc actgcgccac cagggaagac
      901 caacaactca gttttaaaac cagaaatcga aagtaatttt gtgagaaaaa tgttagagcc
      961 tgcttttcac ttaattgcta gtgaagatga tgatatgact ccagagacaa tgggccatga
     1021 attttcccat ttttctgaaa caccagttaa acaaggaatt tcctttagca aaaagtccac
     1081 agataaggat atggaagaga gctggacaac gaattcaaag aaactggaga ggctggggtc
     1141 agctaagcaa agcagtcctg atctttcatt tttaattgtg atgaataacg taggagaaaa
     1201 gcatcttttt gtagatctag gagtttatac aagaaataga aactttcgac tgtataaatc
     1261 atcaaaaata ggaaagtatg tgcctttgga ggttgctgaa gataacaaat tttatcctgt
     1321 acaatcggag aatatttcca aagaaaatca atatttcctc tcttctttgg tcagcaatgt
     1381 cagattctca gatactttac gaattctgac atgtgatata tctcaaaata aacaacgagt
     1441 tgagaatttt aaccatacca gtacttcaga aggaaggccg actacagaga gactaaagct
     1501 acaattggca aaggaggagc agctacttac attagacaag atagtagaaa ccattgaagg
     1561 ttttcagtgt tcaccttacc ctgaaattga tcaatttgtt ctcttgttgg tgaataaaaa
     1621 tggcattaaa ggaggaattc ggcgctggaa ctactttttc ccagaagaat tattggttta
     1681 tgatatttgt aaataccgct ggtgtgaaaa cattggaaga gcccacaaga gtaataatat
     1741 catgattttg gttgacctga aaaatgaagt ttggtatcaa aaatgtcatg accctatatg
     1801 taaagcagaa aacttcaaat ctgactgttt cccattacct gctgaagtgc gtctcctgtt
     1861 tcttctcaaa gaggaagagg agtttacaac agatgaaaca agggacaatg aaaccaagaa
     1921 tcctcatgaa ccatcctcta gtgcatcgtc aaaaggtaca ttttctgatg ctgactggga
     1981 taatggcatt gatgatgctt atattttgga ggctacagaa gatgctgaat tggcagaagc
     2041 tgcagagaac agtcttcttg gttataatgg aatcgatgaa attcctgatg aactaattat
     2101 agaagtatta taagagtagc taattatgga cacttaaata actaggcggt aatctgcttg
     2161 aaaacattta gtaacaaact agtaacttac aaagcctgtt gtatcagcta agttttatta
     2221 ctttgcttcc aaatcttatt tattgaagta aaccagtttt attgaaaatt agctccagtg
     2281 tgcttcaatt cagtatgagt ctccttattt gattaaccag ttattagtct ttgttcgtat
     2341 cagcttaatt ttgcatgttt atttttacag taaaactttt ttatgtctag ggctgattag
     2401 gtgtcaacat tttaaaacat tttgaaactt attacttgac attaaccaga aaaattaact
     2461 atggcctcta aaactctata cctaaccatt taattttaat gacaaagtaa tattaaattc
     2521 tggtgacaag accatacaac cagcctgaac aaatagacaa gtttactttt
//
LOCUS       XM_032618189            3386 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X3, mRNA.
ACCESSION   XM_032618189
VERSION     XM_032618189.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3386
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3386
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             1013..2929
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X1"
                     /protein_id="XP_032474080.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPV
                     SPASSGRLSTTAPPGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEF
                     SHFSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGE
                     KHLFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLV
                     SNVRFSDTLRILTCDISQNKQRVENFNHTSTSEGRPTTERLKLQLAKEEQLLTLDKIV
                     ETIEGFQCSPYPEIDQFVLLLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGR
                     AHKSNNIMILVDLKNEVWYQKCHDPICKAENFKSDCFPLPAEVRLLFLLKEEEEFTTD
                     ETRDNETKNPHEPSSSASSKGTFSDADWDNGIDDAYILEATEDAELAEAAENSLLGYN
                     GIDEIPDELIIEVL"
     misc_feature    2468..2662
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    2720..2926
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(2783..2803,2807..2839)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(2894..2905,2909..2920)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 acgggcaggc cctgcgggag gaaggagagc gggtcgcggc ctgccggtag tccccgcttc
       61 ccctcgggcg accggaggcc ttcccttagg tcacctcgaa ttccctgtcc cgaaaccaaa
      121 agctttaacc gcccagctgg gcctccgcct gtcttgggtc acgaactctt ttcagactct
      181 gaggcgtttt cgcagaagaa tgtaccaacc caattgagca cgaaattctc catcaaattt
      241 caagaggttc aggacattct gacaagtcag ggtccccagg tgaagaactc gcccacttcc
      301 agcacttttg tttacttgga tataaatgag ggcgccgttt tgttcacaga tatacatcgt
      361 tctgagtatg gctaccgttc cttgagtgct tatctgtgtt ctcacattgt ggcaatgcat
      421 ttttttttct ttcagcagcc cctgcaggta ggaattcctg tttccacctg ggcttaatta
      481 aaaaggctaa gtagtttgct cttgttaagg gttacaggag ttaaactcag atcctaggaa
      541 taaaacctag gcctttatcc ctgccaagtt gagagaggac cagtgtttgg cagtcctttt
      601 tctgctgcag taaaactgaa gaataggacc cactcccagc ctgcacggtg gttggcatgc
      661 agttatttgt aaggcaggca ctagtgtact agtttttttt aaccagtcct gttaccccgt
      721 agtgatgcac aaaccccttc ctgtgctaaa ctttcttacc aaaattatgc tctagttaaa
      781 gcagtggcag cagcagcggt tttctgtttt tttttgtgta aatgacactt attagtttgg
      841 agaaacttta attatagtaa aatagctggc tagaagcaat gtcggaagtt tctttctaca
      901 gaggtgtctc aggtggcaga acctgatctg ggcctgggag gggaagactt caggaaggta
      961 attcacagag atcctacctg ggataggatt tagtctcccc atacttctac caatgaagag
     1021 aaaatgggaa gcaaggctga agcaaattga agaacgagca tcccattatg agagggaacc
     1081 attgtccttg gtatacagac caagattgtc taagccagaa gaaccaccat ccatttggaa
     1141 actatttcat cggcaaactc aagcttttaa ttttgttaaa agttgtaaag aggacgttca
     1201 tgtatttgct ttggaataca aagtgggcga tggacaacgt atttacctcg taacaacgta
     1261 tactcaactt tggttttact ataaatcccg aagaaatctc ttacactgct atgaagtcat
     1321 tcctgaaaat gctgtgtgca agctttattt tgatttggaa tttaacagac ttgccaatcc
     1381 aggagctgat gggaaaaaga tggttgcatt actcattgag catgtttgta aggcacttca
     1441 acagttttac agggttcgtt gttcagctga agatgttctc aacttggatt ctagcaccaa
     1501 tgaaaaattt agccgccatt taatatttca actccatgat gtggtattta aagataatat
     1561 tcatgttgag cacaggctcc ggacgtgcag gctcaggggc catggctcac gggcccagct
     1621 gctccgcggc acgtgggatc ttcccagacc ggggcatgaa cccgtgtccc ctgcatcgtc
     1681 aggcagactc tcaaccactg cgccaccagg gaagaccaac aactcagttt taaaaccaga
     1741 aatcgaaagt aattttgtga gaaaaatgtt agagcctgct tttcacttaa ttgctagtga
     1801 agatgatgat atgactccag agacaatggg ccatgaattt tcccattttt ctgaaacacc
     1861 agttaaacaa ggaatttcct ttagcaaaaa gtccacagat aaggatatgg aagagagctg
     1921 gacaacgaat tcaaagaaac tggagaggct ggggtcagct aagcaaagca gtcctgatct
     1981 ttcattttta attgtgatga ataacgtagg agaaaagcat ctttttgtag atctaggagt
     2041 ttatacaaga aatagaaact ttcgactgta taaatcatca aaaataggaa agtatgtgcc
     2101 tttggaggtt gctgaagata acaaatttta tcctgtacaa tcggagaata tttccaaaga
     2161 aaatcaatat ttcctctctt ctttggtcag caatgtcaga ttctcagata ctttacgaat
     2221 tctgacatgt gatatatctc aaaataaaca acgagttgag aattttaacc ataccagtac
     2281 ttcagaagga aggccgacta cagagagact aaagctacaa ttggcaaagg aggagcagct
     2341 acttacatta gacaagatag tagaaaccat tgaaggtttt cagtgttcac cttaccctga
     2401 aattgatcaa tttgttctct tgttggtgaa taaaaatggc attaaaggag gaattcggcg
     2461 ctggaactac tttttcccag aagaattatt ggtttatgat atttgtaaat accgctggtg
     2521 tgaaaacatt ggaagagccc acaagagtaa taatatcatg attttggttg acctgaaaaa
     2581 tgaagtttgg tatcaaaaat gtcatgaccc tatatgtaaa gcagaaaact tcaaatctga
     2641 ctgtttccca ttacctgctg aagtgcgtct cctgtttctt ctcaaagagg aagaggagtt
     2701 tacaacagat gaaacaaggg acaatgaaac caagaatcct catgaaccat cctctagtgc
     2761 atcgtcaaaa ggtacatttt ctgatgctga ctgggataat ggcattgatg atgcttatat
     2821 tttggaggct acagaagatg ctgaattggc agaagctgca gagaacagtc ttcttggtta
     2881 taatggaatc gatgaaattc ctgatgaact aattatagaa gtattataag agtagctaat
     2941 tatggacact taaataacta ggcggtaatc tgcttgaaaa catttagtaa caaactagta
     3001 acttacaaag cctgttgtat cagctaagtt ttattacttt gcttccaaat cttatttatt
     3061 gaagtaaacc agttttattg aaaattagct ccagtgtgct tcaattcagt atgagtctcc
     3121 ttatttgatt aaccagttat tagtctttgt tcgtatcagc ttaattttgc atgtttattt
     3181 ttacagtaaa acttttttat gtctagggct gattaggtgt caacatttta aaacattttg
     3241 aaacttatta cttgacatta accagaaaaa ttaactatgg cctctaaaac tctataccta
     3301 accatttaat tttaatgaca aagtaatatt aaattctggt gacaagacca tacaaccagc
     3361 ctgaacaaat agacaagttt actttt
//
LOCUS       XM_032618190            2558 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X4, mRNA.
ACCESSION   XM_032618190
VERSION     XM_032618190.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2558
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             188..2101
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X2"
                     /protein_id="XP_032474081.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPV
                     SPASSGRLSTTAPPGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEF
                     SHFSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGE
                     KHLFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLV
                     SNVRFSDTLRILTCDISQNKQRVENFNHTSTSEGRPTTERLKLQLAKEEQLLTLDKIE
                     TIEGFQCSPYPEIDQFVLLLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGRA
                     HKSNNIMILVDLKNEVWYQKCHDPICKAENFKSDCFPLPAEVRLLFLLKEEEEFTTDE
                     TRDNETKNPHEPSSSASSKGTFSDADWDNGIDDAYILEATEDAELAEAAENSLLGYNG
                     IDEIPDELIIEVL"
     misc_feature    1640..1834
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1892..2098
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1955..1975,1979..2011)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(2066..2077,2081..2092)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 tctccccact tcccgccccg gccccgcctc cgcgccaggt ttgaagactc ggtcccgcca
       61 cagtgggcgg cttgtgtgtc ctgccagccg cagaggaccc acggcttccc gcccacgacg
      121 agcgtctctg gagtaattca cagagatcct acctgggata ggatttagtc tccccatact
      181 tctaccaatg aagagaaaat gggaagcaag gctgaagcaa attgaagaac gagcatccca
      241 ttatgagagg gaaccattgt ccttggtata cagaccaaga ttgtctaagc cagaagaacc
      301 accatccatt tggaaactat ttcatcggca aactcaagct tttaattttg ttaaaagttg
      361 taaagaggac gttcatgtat ttgctttgga atacaaagtg ggcgatggac aacgtattta
      421 cctcgtaaca acgtatactc aactttggtt ttactataaa tcccgaagaa atctcttaca
      481 ctgctatgaa gtcattcctg aaaatgctgt gtgcaagctt tattttgatt tggaatttaa
      541 cagacttgcc aatccaggag ctgatgggaa aaagatggtt gcattactca ttgagcatgt
      601 ttgtaaggca cttcaacagt tttacagggt tcgttgttca gctgaagatg ttctcaactt
      661 ggattctagc accaatgaaa aatttagccg ccatttaata tttcaactcc atgatgtggt
      721 atttaaagat aatattcatg ttgagcacag gctccggacg tgcaggctca ggggccatgg
      781 ctcacgggcc cagctgctcc gcggcacgtg ggatcttccc agaccggggc atgaacccgt
      841 gtcccctgca tcgtcaggca gactctcaac cactgcgcca ccagggaaga ccaacaactc
      901 agttttaaaa ccagaaatcg aaagtaattt tgtgagaaaa atgttagagc ctgcttttca
      961 cttaattgct agtgaagatg atgatatgac tccagagaca atgggccatg aattttccca
     1021 tttttctgaa acaccagtta aacaaggaat ttcctttagc aaaaagtcca cagataagga
     1081 tatggaagag agctggacaa cgaattcaaa gaaactggag aggctggggt cagctaagca
     1141 aagcagtcct gatctttcat ttttaattgt gatgaataac gtaggagaaa agcatctttt
     1201 tgtagatcta ggagtttata caagaaatag aaactttcga ctgtataaat catcaaaaat
     1261 aggaaagtat gtgcctttgg aggttgctga agataacaaa ttttatcctg tacaatcgga
     1321 gaatatttcc aaagaaaatc aatatttcct ctcttctttg gtcagcaatg tcagattctc
     1381 agatacttta cgaattctga catgtgatat atctcaaaat aaacaacgag ttgagaattt
     1441 taaccatacc agtacttcag aaggaaggcc gactacagag agactaaagc tacaattggc
     1501 aaaggaggag cagctactta cattagacaa gatagaaacc attgaaggtt ttcagtgttc
     1561 accttaccct gaaattgatc aatttgttct cttgttggtg aataaaaatg gcattaaagg
     1621 aggaattcgg cgctggaact actttttccc agaagaatta ttggtttatg atatttgtaa
     1681 ataccgctgg tgtgaaaaca ttggaagagc ccacaagagt aataatatca tgattttggt
     1741 tgacctgaaa aatgaagttt ggtatcaaaa atgtcatgac cctatatgta aagcagaaaa
     1801 cttcaaatct gactgtttcc cattacctgc tgaagtgcgt ctcctgtttc ttctcaaaga
     1861 ggaagaggag tttacaacag atgaaacaag ggacaatgaa accaagaatc ctcatgaacc
     1921 atcctctagt gcatcgtcaa aaggtacatt ttctgatgct gactgggata atggcattga
     1981 tgatgcttat attttggagg ctacagaaga tgctgaattg gcagaagctg cagagaacag
     2041 tcttcttggt tataatggaa tcgatgaaat tcctgatgaa ctaattatag aagtattata
     2101 agagtagcta attatggaca cttaaataac taggcggtaa tctgcttgaa aacatttagt
     2161 aacaaactag taacttacaa agcctgttgt atcagctaag ttttattact ttgcttccaa
     2221 atcttattta ttgaagtaaa ccagttttat tgaaaattag ctccagtgtg cttcaattca
     2281 gtatgagtct ccttatttga ttaaccagtt attagtcttt gttcgtatca gcttaatttt
     2341 gcatgtttat ttttacagta aaactttttt atgtctaggg ctgattaggt gtcaacattt
     2401 taaaacattt tgaaacttat tacttgacat taaccagaaa aattaactat ggcctctaaa
     2461 actctatacc taaccattta attttaatga caaagtaata ttaaattctg gtgacaagac
     2521 catacaacca gcctgaacaa atagacaagt ttactttt
//
LOCUS       XM_032618192            2558 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X5, mRNA.
ACCESSION   XM_032618192
VERSION     XM_032618192.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2558
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             188..2101
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X3"
                     /protein_id="XP_032474083.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRNLLHCYEVI
                     PENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDSS
                     TNEKFSRHLIFQLHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPVS
                     PASSGRLSTTAPPGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEFS
                     HFSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGEK
                     HLFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLVS
                     NVRFSDTLRILTCDISQNKQRVENFNHTSTSEGRPTTERLKLQLAKEEQLLTLDKIVE
                     TIEGFQCSPYPEIDQFVLLLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGRA
                     HKSNNIMILVDLKNEVWYQKCHDPICKAENFKSDCFPLPAEVRLLFLLKEEEEFTTDE
                     TRDNETKNPHEPSSSASSKGTFSDADWDNGIDDAYILEATEDAELAEAAENSLLGYNG
                     IDEIPDELIIEVL"
     misc_feature    1640..1834
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1892..2098
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1955..1975,1979..2011)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(2066..2077,2081..2092)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 tctccccact tcccgccccg gccccgcctc cgcgccaggt ttgaagactc ggtcccgcca
       61 cagtgggcgg cttgtgtgtc ctgccagccg cagaggaccc acggcttccc gcccacgacg
      121 agcgtctctg gagtaattca cagagatcct acctgggata ggatttagtc tccccatact
      181 tctaccaatg aagagaaaat gggaagcaag gctgaagcaa attgaagaac gagcatccca
      241 ttatgagagg gaaccattgt ccttggtata cagaccaaga ttgtctaagc cagaagaacc
      301 accatccatt tggaaactat ttcatcggca aactcaagct tttaattttg ttaaaagttg
      361 taaagaggac gttcatgtat ttgctttgga atacaaagtg ggcgatggac aacgtattta
      421 cctcgtaaca acgtatactc aactttggtt ttactataaa tcccgaaatc tcttacactg
      481 ctatgaagtc attcctgaaa atgctgtgtg caagctttat tttgatttgg aatttaacag
      541 acttgccaat ccaggagctg atgggaaaaa gatggttgca ttactcattg agcatgtttg
      601 taaggcactt caacagtttt acagggttcg ttgttcagct gaagatgttc tcaacttgga
      661 ttctagcacc aatgaaaaat ttagccgcca tttaatattt caactccatg atgtggtatt
      721 taaagataat attcatgttg agcacaggct ccggacgtgc aggctcaggg gccatggctc
      781 acgggcccag ctgctccgcg gcacgtggga tcttcccaga ccggggcatg aacccgtgtc
      841 ccctgcatcg tcaggcagac tctcaaccac tgcgccacca gggaagacca acaactcagt
      901 tttaaaacca gaaatcgaaa gtaattttgt gagaaaaatg ttagagcctg cttttcactt
      961 aattgctagt gaagatgatg atatgactcc agagacaatg ggccatgaat tttcccattt
     1021 ttctgaaaca ccagttaaac aaggaatttc ctttagcaaa aagtccacag ataaggatat
     1081 ggaagagagc tggacaacga attcaaagaa actggagagg ctggggtcag ctaagcaaag
     1141 cagtcctgat ctttcatttt taattgtgat gaataacgta ggagaaaagc atctttttgt
     1201 agatctagga gtttatacaa gaaatagaaa ctttcgactg tataaatcat caaaaatagg
     1261 aaagtatgtg cctttggagg ttgctgaaga taacaaattt tatcctgtac aatcggagaa
     1321 tatttccaaa gaaaatcaat atttcctctc ttctttggtc agcaatgtca gattctcaga
     1381 tactttacga attctgacat gtgatatatc tcaaaataaa caacgagttg agaattttaa
     1441 ccataccagt acttcagaag gaaggccgac tacagagaga ctaaagctac aattggcaaa
     1501 ggaggagcag ctacttacat tagacaagat agtagaaacc attgaaggtt ttcagtgttc
     1561 accttaccct gaaattgatc aatttgttct cttgttggtg aataaaaatg gcattaaagg
     1621 aggaattcgg cgctggaact actttttccc agaagaatta ttggtttatg atatttgtaa
     1681 ataccgctgg tgtgaaaaca ttggaagagc ccacaagagt aataatatca tgattttggt
     1741 tgacctgaaa aatgaagttt ggtatcaaaa atgtcatgac cctatatgta aagcagaaaa
     1801 cttcaaatct gactgtttcc cattacctgc tgaagtgcgt ctcctgtttc ttctcaaaga
     1861 ggaagaggag tttacaacag atgaaacaag ggacaatgaa accaagaatc ctcatgaacc
     1921 atcctctagt gcatcgtcaa aaggtacatt ttctgatgct gactgggata atggcattga
     1981 tgatgcttat attttggagg ctacagaaga tgctgaattg gcagaagctg cagagaacag
     2041 tcttcttggt tataatggaa tcgatgaaat tcctgatgaa ctaattatag aagtattata
     2101 agagtagcta attatggaca cttaaataac taggcggtaa tctgcttgaa aacatttagt
     2161 aacaaactag taacttacaa agcctgttgt atcagctaag ttttattact ttgcttccaa
     2221 atcttattta ttgaagtaaa ccagttttat tgaaaattag ctccagtgtg cttcaattca
     2281 gtatgagtct ccttatttga ttaaccagtt attagtcttt gttcgtatca gcttaatttt
     2341 gcatgtttat ttttacagta aaactttttt atgtctaggg ctgattaggt gtcaacattt
     2401 taaaacattt tgaaacttat tacttgacat taaccagaaa aattaactat ggcctctaaa
     2461 actctatacc taaccattta attttaatga caaagtaata ttaaattctg gtgacaagac
     2521 catacaacca gcctgaacaa atagacaagt ttactttt
//
LOCUS       XM_032618193            2486 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X6, mRNA.
ACCESSION   XM_032618193
VERSION     XM_032618193.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2486
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             188..2029
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X4"
                     /protein_id="XP_032474084.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPV
                     SPASSGRLSTTAPPGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEF
                     SHFSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGE
                     KHLFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLV
                     SNVRFSDTLRILTCDISQNKQRVENFNHTSTSVETIEGFQCSPYPEIDQFVLLLVNKN
                     GIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDP
                     ICKAENFKSDCFPLPAEVRLLFLLKEEEEFTTDETRDNETKNPHEPSSSASSKGTFSD
                     ADWDNGIDDAYILEATEDAELAEAAENSLLGYNGIDEIPDELIIEVL"
     misc_feature    1568..1762
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1820..2026
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1883..1903,1907..1939)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(1994..2005,2009..2020)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 tctccccact tcccgccccg gccccgcctc cgcgccaggt ttgaagactc ggtcccgcca
       61 cagtgggcgg cttgtgtgtc ctgccagccg cagaggaccc acggcttccc gcccacgacg
      121 agcgtctctg gagtaattca cagagatcct acctgggata ggatttagtc tccccatact
      181 tctaccaatg aagagaaaat gggaagcaag gctgaagcaa attgaagaac gagcatccca
      241 ttatgagagg gaaccattgt ccttggtata cagaccaaga ttgtctaagc cagaagaacc
      301 accatccatt tggaaactat ttcatcggca aactcaagct tttaattttg ttaaaagttg
      361 taaagaggac gttcatgtat ttgctttgga atacaaagtg ggcgatggac aacgtattta
      421 cctcgtaaca acgtatactc aactttggtt ttactataaa tcccgaagaa atctcttaca
      481 ctgctatgaa gtcattcctg aaaatgctgt gtgcaagctt tattttgatt tggaatttaa
      541 cagacttgcc aatccaggag ctgatgggaa aaagatggtt gcattactca ttgagcatgt
      601 ttgtaaggca cttcaacagt tttacagggt tcgttgttca gctgaagatg ttctcaactt
      661 ggattctagc accaatgaaa aatttagccg ccatttaata tttcaactcc atgatgtggt
      721 atttaaagat aatattcatg ttgagcacag gctccggacg tgcaggctca ggggccatgg
      781 ctcacgggcc cagctgctcc gcggcacgtg ggatcttccc agaccggggc atgaacccgt
      841 gtcccctgca tcgtcaggca gactctcaac cactgcgcca ccagggaaga ccaacaactc
      901 agttttaaaa ccagaaatcg aaagtaattt tgtgagaaaa atgttagagc ctgcttttca
      961 cttaattgct agtgaagatg atgatatgac tccagagaca atgggccatg aattttccca
     1021 tttttctgaa acaccagtta aacaaggaat ttcctttagc aaaaagtcca cagataagga
     1081 tatggaagag agctggacaa cgaattcaaa gaaactggag aggctggggt cagctaagca
     1141 aagcagtcct gatctttcat ttttaattgt gatgaataac gtaggagaaa agcatctttt
     1201 tgtagatcta ggagtttata caagaaatag aaactttcga ctgtataaat catcaaaaat
     1261 aggaaagtat gtgcctttgg aggttgctga agataacaaa ttttatcctg tacaatcgga
     1321 gaatatttcc aaagaaaatc aatatttcct ctcttctttg gtcagcaatg tcagattctc
     1381 agatacttta cgaattctga catgtgatat atctcaaaat aaacaacgag ttgagaattt
     1441 taaccatacc agtacttcag tagaaaccat tgaaggtttt cagtgttcac cttaccctga
     1501 aattgatcaa tttgttctct tgttggtgaa taaaaatggc attaaaggag gaattcggcg
     1561 ctggaactac tttttcccag aagaattatt ggtttatgat atttgtaaat accgctggtg
     1621 tgaaaacatt ggaagagccc acaagagtaa taatatcatg attttggttg acctgaaaaa
     1681 tgaagtttgg tatcaaaaat gtcatgaccc tatatgtaaa gcagaaaact tcaaatctga
     1741 ctgtttccca ttacctgctg aagtgcgtct cctgtttctt ctcaaagagg aagaggagtt
     1801 tacaacagat gaaacaaggg acaatgaaac caagaatcct catgaaccat cctctagtgc
     1861 atcgtcaaaa ggtacatttt ctgatgctga ctgggataat ggcattgatg atgcttatat
     1921 tttggaggct acagaagatg ctgaattggc agaagctgca gagaacagtc ttcttggtta
     1981 taatggaatc gatgaaattc ctgatgaact aattatagaa gtattataag agtagctaat
     2041 tatggacact taaataacta ggcggtaatc tgcttgaaaa catttagtaa caaactagta
     2101 acttacaaag cctgttgtat cagctaagtt ttattacttt gcttccaaat cttatttatt
     2161 gaagtaaacc agttttattg aaaattagct ccagtgtgct tcaattcagt atgagtctcc
     2221 ttatttgatt aaccagttat tagtctttgt tcgtatcagc ttaattttgc atgtttattt
     2281 ttacagtaaa acttttttat gtctagggct gattaggtgt caacatttta aaacattttg
     2341 aaacttatta cttgacatta accagaaaaa ttaactatgg cctctaaaac tctataccta
     2401 accatttaat tttaatgaca aagtaatatt aaattctggt gacaagacca tacaaccagc
     2461 ctgaacaaat agacaagttt actttt
//
LOCUS       XM_032618194            2483 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X7, mRNA.
ACCESSION   XM_032618194
VERSION     XM_032618194.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2483
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             188..2026
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X5"
                     /protein_id="XP_032474085.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPV
                     SPASSGRLSTTAPPGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEF
                     SHFSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGE
                     KHLFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLV
                     SNVRFSDTLRILTCDISQNKQRVENFNHTSTSETIEGFQCSPYPEIDQFVLLLVNKNG
                     IKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPI
                     CKAENFKSDCFPLPAEVRLLFLLKEEEEFTTDETRDNETKNPHEPSSSASSKGTFSDA
                     DWDNGIDDAYILEATEDAELAEAAENSLLGYNGIDEIPDELIIEVL"
     misc_feature    1565..1759
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1817..2023
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1880..1900,1904..1936)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(1991..2002,2006..2017)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 tctccccact tcccgccccg gccccgcctc cgcgccaggt ttgaagactc ggtcccgcca
       61 cagtgggcgg cttgtgtgtc ctgccagccg cagaggaccc acggcttccc gcccacgacg
      121 agcgtctctg gagtaattca cagagatcct acctgggata ggatttagtc tccccatact
      181 tctaccaatg aagagaaaat gggaagcaag gctgaagcaa attgaagaac gagcatccca
      241 ttatgagagg gaaccattgt ccttggtata cagaccaaga ttgtctaagc cagaagaacc
      301 accatccatt tggaaactat ttcatcggca aactcaagct tttaattttg ttaaaagttg
      361 taaagaggac gttcatgtat ttgctttgga atacaaagtg ggcgatggac aacgtattta
      421 cctcgtaaca acgtatactc aactttggtt ttactataaa tcccgaagaa atctcttaca
      481 ctgctatgaa gtcattcctg aaaatgctgt gtgcaagctt tattttgatt tggaatttaa
      541 cagacttgcc aatccaggag ctgatgggaa aaagatggtt gcattactca ttgagcatgt
      601 ttgtaaggca cttcaacagt tttacagggt tcgttgttca gctgaagatg ttctcaactt
      661 ggattctagc accaatgaaa aatttagccg ccatttaata tttcaactcc atgatgtggt
      721 atttaaagat aatattcatg ttgagcacag gctccggacg tgcaggctca ggggccatgg
      781 ctcacgggcc cagctgctcc gcggcacgtg ggatcttccc agaccggggc atgaacccgt
      841 gtcccctgca tcgtcaggca gactctcaac cactgcgcca ccagggaaga ccaacaactc
      901 agttttaaaa ccagaaatcg aaagtaattt tgtgagaaaa atgttagagc ctgcttttca
      961 cttaattgct agtgaagatg atgatatgac tccagagaca atgggccatg aattttccca
     1021 tttttctgaa acaccagtta aacaaggaat ttcctttagc aaaaagtcca cagataagga
     1081 tatggaagag agctggacaa cgaattcaaa gaaactggag aggctggggt cagctaagca
     1141 aagcagtcct gatctttcat ttttaattgt gatgaataac gtaggagaaa agcatctttt
     1201 tgtagatcta ggagtttata caagaaatag aaactttcga ctgtataaat catcaaaaat
     1261 aggaaagtat gtgcctttgg aggttgctga agataacaaa ttttatcctg tacaatcgga
     1321 gaatatttcc aaagaaaatc aatatttcct ctcttctttg gtcagcaatg tcagattctc
     1381 agatacttta cgaattctga catgtgatat atctcaaaat aaacaacgag ttgagaattt
     1441 taaccatacc agtacttcag aaaccattga aggttttcag tgttcacctt accctgaaat
     1501 tgatcaattt gttctcttgt tggtgaataa aaatggcatt aaaggaggaa ttcggcgctg
     1561 gaactacttt ttcccagaag aattattggt ttatgatatt tgtaaatacc gctggtgtga
     1621 aaacattgga agagcccaca agagtaataa tatcatgatt ttggttgacc tgaaaaatga
     1681 agtttggtat caaaaatgtc atgaccctat atgtaaagca gaaaacttca aatctgactg
     1741 tttcccatta cctgctgaag tgcgtctcct gtttcttctc aaagaggaag aggagtttac
     1801 aacagatgaa acaagggaca atgaaaccaa gaatcctcat gaaccatcct ctagtgcatc
     1861 gtcaaaaggt acattttctg atgctgactg ggataatggc attgatgatg cttatatttt
     1921 ggaggctaca gaagatgctg aattggcaga agctgcagag aacagtcttc ttggttataa
     1981 tggaatcgat gaaattcctg atgaactaat tatagaagta ttataagagt agctaattat
     2041 ggacacttaa ataactaggc ggtaatctgc ttgaaaacat ttagtaacaa actagtaact
     2101 tacaaagcct gttgtatcag ctaagtttta ttactttgct tccaaatctt atttattgaa
     2161 gtaaaccagt tttattgaaa attagctcca gtgtgcttca attcagtatg agtctcctta
     2221 tttgattaac cagttattag tctttgttcg tatcagctta attttgcatg tttattttta
     2281 cagtaaaact tttttatgtc tagggctgat taggtgtcaa cattttaaaa cattttgaaa
     2341 cttattactt gacattaacc agaaaaatta actatggcct ctaaaactct atacctaacc
     2401 atttaatttt aatgacaaag taatattaaa ttctggtgac aagaccatac aaccagcctg
     2461 aacaaataga caagtttact ttt
//
LOCUS       XM_032618195            2381 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X8, mRNA.
ACCESSION   XM_032618195
VERSION     XM_032618195.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2381
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             188..1924
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X6"
                     /protein_id="XP_032474086.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVGNFVRKMLEPAFHLIASEDDDMTPETMGHEFSH
                     FSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGEKH
                     LFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLVSN
                     VRFSDTLRILTCDISQNKQRVENFNHTSTSEGRPTTERLKLQLAKEEQLLTLDKIVET
                     IEGFQCSPYPEIDQFVLLLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAH
                     KSNNIMILVDLKNEVWYQKCHDPICKAENFKSDCFPLPAEVRLLFLLKEEEEFTTDET
                     RDNETKNPHEPSSSASSKGTFSDADWDNGIDDAYILEATEDAELAEAAENSLLGYNGI
                     DEIPDELIIEVL"
     misc_feature    1463..1657
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1715..1921
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1778..1798,1802..1834)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(1889..1900,1904..1915)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 tctccccact tcccgccccg gccccgcctc cgcgccaggt ttgaagactc ggtcccgcca
       61 cagtgggcgg cttgtgtgtc ctgccagccg cagaggaccc acggcttccc gcccacgacg
      121 agcgtctctg gagtaattca cagagatcct acctgggata ggatttagtc tccccatact
      181 tctaccaatg aagagaaaat gggaagcaag gctgaagcaa attgaagaac gagcatccca
      241 ttatgagagg gaaccattgt ccttggtata cagaccaaga ttgtctaagc cagaagaacc
      301 accatccatt tggaaactat ttcatcggca aactcaagct tttaattttg ttaaaagttg
      361 taaagaggac gttcatgtat ttgctttgga atacaaagtg ggcgatggac aacgtattta
      421 cctcgtaaca acgtatactc aactttggtt ttactataaa tcccgaagaa atctcttaca
      481 ctgctatgaa gtcattcctg aaaatgctgt gtgcaagctt tattttgatt tggaatttaa
      541 cagacttgcc aatccaggag ctgatgggaa aaagatggtt gcattactca ttgagcatgt
      601 ttgtaaggca cttcaacagt tttacagggt tcgttgttca gctgaagatg ttctcaactt
      661 ggattctagc accaatgaaa aatttagccg ccatttaata tttcaactcc atgatgtggt
      721 atttaaagat aatattcatg ttggtaattt tgtgagaaaa atgttagagc ctgcttttca
      781 cttaattgct agtgaagatg atgatatgac tccagagaca atgggccatg aattttccca
      841 tttttctgaa acaccagtta aacaaggaat ttcctttagc aaaaagtcca cagataagga
      901 tatggaagag agctggacaa cgaattcaaa gaaactggag aggctggggt cagctaagca
      961 aagcagtcct gatctttcat ttttaattgt gatgaataac gtaggagaaa agcatctttt
     1021 tgtagatcta ggagtttata caagaaatag aaactttcga ctgtataaat catcaaaaat
     1081 aggaaagtat gtgcctttgg aggttgctga agataacaaa ttttatcctg tacaatcgga
     1141 gaatatttcc aaagaaaatc aatatttcct ctcttctttg gtcagcaatg tcagattctc
     1201 agatacttta cgaattctga catgtgatat atctcaaaat aaacaacgag ttgagaattt
     1261 taaccatacc agtacttcag aaggaaggcc gactacagag agactaaagc tacaattggc
     1321 aaaggaggag cagctactta cattagacaa gatagtagaa accattgaag gttttcagtg
     1381 ttcaccttac cctgaaattg atcaatttgt tctcttgttg gtgaataaaa atggcattaa
     1441 aggaggaatt cggcgctgga actacttttt cccagaagaa ttattggttt atgatatttg
     1501 taaataccgc tggtgtgaaa acattggaag agcccacaag agtaataata tcatgatttt
     1561 ggttgacctg aaaaatgaag tttggtatca aaaatgtcat gaccctatat gtaaagcaga
     1621 aaacttcaaa tctgactgtt tcccattacc tgctgaagtg cgtctcctgt ttcttctcaa
     1681 agaggaagag gagtttacaa cagatgaaac aagggacaat gaaaccaaga atcctcatga
     1741 accatcctct agtgcatcgt caaaaggtac attttctgat gctgactggg ataatggcat
     1801 tgatgatgct tatattttgg aggctacaga agatgctgaa ttggcagaag ctgcagagaa
     1861 cagtcttctt ggttataatg gaatcgatga aattcctgat gaactaatta tagaagtatt
     1921 ataagagtag ctaattatgg acacttaaat aactaggcgg taatctgctt gaaaacattt
     1981 agtaacaaac tagtaactta caaagcctgt tgtatcagct aagttttatt actttgcttc
     2041 caaatcttat ttattgaagt aaaccagttt tattgaaaat tagctccagt gtgcttcaat
     2101 tcagtatgag tctccttatt tgattaacca gttattagtc tttgttcgta tcagcttaat
     2161 tttgcatgtt tatttttaca gtaaaacttt tttatgtcta gggctgatta ggtgtcaaca
     2221 ttttaaaaca ttttgaaact tattacttga cattaaccag aaaaattaac tatggcctct
     2281 aaaactctat acctaaccat ttaattttaa tgacaaagta atattaaatt ctggtgacaa
     2341 gaccatacaa ccagcctgaa caaatagaca agtttacttt t
//
LOCUS       XM_032618196            2306 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X9, mRNA.
ACCESSION   XM_032618196
VERSION     XM_032618196.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2306
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746658"
     CDS             188..1849
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X7"
                     /protein_id="XP_032474087.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVGNFVRKMLEPAFHLIASEDDDMTPETMGHEFSH
                     FSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGEKH
                     LFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLVSN
                     VRFSDTLRILTCDISQNKQRVENFNHTSTSVETIEGFQCSPYPEIDQFVLLLVNKNGI
                     KGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPIC
                     KAENFKSDCFPLPAEVRLLFLLKEEEEFTTDETRDNETKNPHEPSSSASSKGTFSDAD
                     WDNGIDDAYILEATEDAELAEAAENSLLGYNGIDEIPDELIIEVL"
     misc_feature    1388..1582
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1640..1846
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1703..1723,1727..1759)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(1814..1825,1829..1840)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 tctccccact tcccgccccg gccccgcctc cgcgccaggt ttgaagactc ggtcccgcca
       61 cagtgggcgg cttgtgtgtc ctgccagccg cagaggaccc acggcttccc gcccacgacg
      121 agcgtctctg gagtaattca cagagatcct acctgggata ggatttagtc tccccatact
      181 tctaccaatg aagagaaaat gggaagcaag gctgaagcaa attgaagaac gagcatccca
      241 ttatgagagg gaaccattgt ccttggtata cagaccaaga ttgtctaagc cagaagaacc
      301 accatccatt tggaaactat ttcatcggca aactcaagct tttaattttg ttaaaagttg
      361 taaagaggac gttcatgtat ttgctttgga atacaaagtg ggcgatggac aacgtattta
      421 cctcgtaaca acgtatactc aactttggtt ttactataaa tcccgaagaa atctcttaca
      481 ctgctatgaa gtcattcctg aaaatgctgt gtgcaagctt tattttgatt tggaatttaa
      541 cagacttgcc aatccaggag ctgatgggaa aaagatggtt gcattactca ttgagcatgt
      601 ttgtaaggca cttcaacagt tttacagggt tcgttgttca gctgaagatg ttctcaactt
      661 ggattctagc accaatgaaa aatttagccg ccatttaata tttcaactcc atgatgtggt
      721 atttaaagat aatattcatg ttggtaattt tgtgagaaaa atgttagagc ctgcttttca
      781 cttaattgct agtgaagatg atgatatgac tccagagaca atgggccatg aattttccca
      841 tttttctgaa acaccagtta aacaaggaat ttcctttagc aaaaagtcca cagataagga
      901 tatggaagag agctggacaa cgaattcaaa gaaactggag aggctggggt cagctaagca
      961 aagcagtcct gatctttcat ttttaattgt gatgaataac gtaggagaaa agcatctttt
     1021 tgtagatcta ggagtttata caagaaatag aaactttcga ctgtataaat catcaaaaat
     1081 aggaaagtat gtgcctttgg aggttgctga agataacaaa ttttatcctg tacaatcgga
     1141 gaatatttcc aaagaaaatc aatatttcct ctcttctttg gtcagcaatg tcagattctc
     1201 agatacttta cgaattctga catgtgatat atctcaaaat aaacaacgag ttgagaattt
     1261 taaccatacc agtacttcag tagaaaccat tgaaggtttt cagtgttcac cttaccctga
     1321 aattgatcaa tttgttctct tgttggtgaa taaaaatggc attaaaggag gaattcggcg
     1381 ctggaactac tttttcccag aagaattatt ggtttatgat atttgtaaat accgctggtg
     1441 tgaaaacatt ggaagagccc acaagagtaa taatatcatg attttggttg acctgaaaaa
     1501 tgaagtttgg tatcaaaaat gtcatgaccc tatatgtaaa gcagaaaact tcaaatctga
     1561 ctgtttccca ttacctgctg aagtgcgtct cctgtttctt ctcaaagagg aagaggagtt
     1621 tacaacagat gaaacaaggg acaatgaaac caagaatcct catgaaccat cctctagtgc
     1681 atcgtcaaaa ggtacatttt ctgatgctga ctgggataat ggcattgatg atgcttatat
     1741 tttggaggct acagaagatg ctgaattggc agaagctgca gagaacagtc ttcttggtta
     1801 taatggaatc gatgaaattc ctgatgaact aattatagaa gtattataag agtagctaat
     1861 tatggacact taaataacta ggcggtaatc tgcttgaaaa catttagtaa caaactagta
     1921 acttacaaag cctgttgtat cagctaagtt ttattacttt gcttccaaat cttatttatt
     1981 gaagtaaacc agttttattg aaaattagct ccagtgtgct tcaattcagt atgagtctcc
     2041 ttatttgatt aaccagttat tagtctttgt tcgtatcagc ttaattttgc atgtttattt
     2101 ttacagtaaa acttttttat gtctagggct gattaggtgt caacatttta aaacattttg
     2161 aaacttatta cttgacatta accagaaaaa ttaactatgg cctctaaaac tctataccta
     2221 accatttaat tttaatgaca aagtaatatt aaattctggt gacaagacca tacaaccagc
     2281 ctgaacaaat agacaagttt actttt
//
LOCUS       XM_032618197            2468 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X10, mRNA.
ACCESSION   XM_032618197
VERSION     XM_032618197.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2468
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746658"
     CDS             353..2011
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X8"
                     /protein_id="XP_032474088.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVGNFVRKMLEPAFHLIASEDDDMTPETMGHEFSH
                     FSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGEKH
                     LFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLVSN
                     VRFSDTLRILTCDISQNKQRVENFNHTSTSETIEGFQCSPYPEIDQFVLLLVNKNGIK
                     GGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPICK
                     AENFKSDCFPLPAEVRLLFLLKEEEEFTTDETRDNETKNPHEPSSSASSKGTFSDADW
                     DNGIDDAYILEATEDAELAEAAENSLLGYNGIDEIPDELIIEVL"
     misc_feature    1550..1744
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1802..2008
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1865..1885,1889..1921)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(1976..1987,1991..2002)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 gcgcctgaga acgccgctca gcccgagagc accgcccact cacgggtccc gggagctcct
       61 ggcttccagg cacgcttccg ggccattcta ggcccttcct ggtctccgct ccctttcagt
      121 ccccgtcctg ccccagaacg ctgtcgtctc actggcccgc gctctcccca cttcccgccc
      181 cggccccgcc tccgcgccag gtttgaagac tcggtcccgc cacagtgggc ggcttgtgtg
      241 tcctgccagc cgcagaggac ccacggcttc ccgcccacga cgagcgtctc tggagtagta
      301 attcacagag atcctacctg ggataggatt tagtctcccc atacttctac caatgaagag
      361 aaaatgggaa gcaaggctga agcaaattga agaacgagca tcccattatg agagggaacc
      421 attgtccttg gtatacagac caagattgtc taagccagaa gaaccaccat ccatttggaa
      481 actatttcat cggcaaactc aagcttttaa ttttgttaaa agttgtaaag aggacgttca
      541 tgtatttgct ttggaataca aagtgggcga tggacaacgt atttacctcg taacaacgta
      601 tactcaactt tggttttact ataaatcccg aagaaatctc ttacactgct atgaagtcat
      661 tcctgaaaat gctgtgtgca agctttattt tgatttggaa tttaacagac ttgccaatcc
      721 aggagctgat gggaaaaaga tggttgcatt actcattgag catgtttgta aggcacttca
      781 acagttttac agggttcgtt gttcagctga agatgttctc aacttggatt ctagcaccaa
      841 tgaaaaattt agccgccatt taatatttca actccatgat gtggtattta aagataatat
      901 tcatgttggt aattttgtga gaaaaatgtt agagcctgct tttcacttaa ttgctagtga
      961 agatgatgat atgactccag agacaatggg ccatgaattt tcccattttt ctgaaacacc
     1021 agttaaacaa ggaatttcct ttagcaaaaa gtccacagat aaggatatgg aagagagctg
     1081 gacaacgaat tcaaagaaac tggagaggct ggggtcagct aagcaaagca gtcctgatct
     1141 ttcattttta attgtgatga ataacgtagg agaaaagcat ctttttgtag atctaggagt
     1201 ttatacaaga aatagaaact ttcgactgta taaatcatca aaaataggaa agtatgtgcc
     1261 tttggaggtt gctgaagata acaaatttta tcctgtacaa tcggagaata tttccaaaga
     1321 aaatcaatat ttcctctctt ctttggtcag caatgtcaga ttctcagata ctttacgaat
     1381 tctgacatgt gatatatctc aaaataaaca acgagttgag aattttaacc ataccagtac
     1441 ttcagaaacc attgaaggtt ttcagtgttc accttaccct gaaattgatc aatttgttct
     1501 cttgttggtg aataaaaatg gcattaaagg aggaattcgg cgctggaact actttttccc
     1561 agaagaatta ttggtttatg atatttgtaa ataccgctgg tgtgaaaaca ttggaagagc
     1621 ccacaagagt aataatatca tgattttggt tgacctgaaa aatgaagttt ggtatcaaaa
     1681 atgtcatgac cctatatgta aagcagaaaa cttcaaatct gactgtttcc cattacctgc
     1741 tgaagtgcgt ctcctgtttc ttctcaaaga ggaagaggag tttacaacag atgaaacaag
     1801 ggacaatgaa accaagaatc ctcatgaacc atcctctagt gcatcgtcaa aaggtacatt
     1861 ttctgatgct gactgggata atggcattga tgatgcttat attttggagg ctacagaaga
     1921 tgctgaattg gcagaagctg cagagaacag tcttcttggt tataatggaa tcgatgaaat
     1981 tcctgatgaa ctaattatag aagtattata agagtagcta attatggaca cttaaataac
     2041 taggcggtaa tctgcttgaa aacatttagt aacaaactag taacttacaa agcctgttgt
     2101 atcagctaag ttttattact ttgcttccaa atcttattta ttgaagtaaa ccagttttat
     2161 tgaaaattag ctccagtgtg cttcaattca gtatgagtct ccttatttga ttaaccagtt
     2221 attagtcttt gttcgtatca gcttaatttt gcatgtttat ttttacagta aaactttttt
     2281 atgtctaggg ctgattaggt gtcaacattt taaaacattt tgaaacttat tacttgacat
     2341 taaccagaaa aattaactat ggcctctaaa actctatacc taaccattta attttaatga
     2401 caaagtaata ttaaattctg gtgacaagac catacaacca gcctgaacaa atagacaagt
     2461 ttactttt
//
LOCUS       XM_032618198            1919 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X11, mRNA.
ACCESSION   XM_032618198
VERSION     XM_032618198.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1919
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746658"
     CDS             188..1753
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X9"
                     /protein_id="XP_032474089.1"
                     /db_xref="GeneID:116746658"
                     /translation="MKRKWEARLKQIEERASHYEREPLSLVYRPRLSKPEEPPSIWKL
                     FHRQTQAFNFVKSCKEDVHVFALEYKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEV
                     IPENAVCKLYFDLEFNRLANPGADGKKMVALLIEHVCKALQQFYRVRCSAEDVLNLDS
                     STNEKFSRHLIFQLHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPV
                     SPASSGRLSTTAPPGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEF
                     SHFSETPVKQGISFSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGE
                     KHLFVDLGVYTRNRNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLV
                     SNVRFSDTLRILTCDISQNKQRVENFNHTSTSEGRPTTERLKLQLAKEEQLLTLDKIV
                     ETIEGFQCSPYPEIDQFVLLLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGR
                     AHKSNNIMFPITC"
     misc_feature    1643..>1738
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
ORIGIN      
        1 tctccccact tcccgccccg gccccgcctc cgcgccaggt ttgaagactc ggtcccgcca
       61 cagtgggcgg cttgtgtgtc ctgccagccg cagaggaccc acggcttccc gcccacgacg
      121 agcgtctctg gagtaattca cagagatcct acctgggata ggatttagtc tccccatact
      181 tctaccaatg aagagaaaat gggaagcaag gctgaagcaa attgaagaac gagcatccca
      241 ttatgagagg gaaccattgt ccttggtata cagaccaaga ttgtctaagc cagaagaacc
      301 accatccatt tggaaactat ttcatcggca aactcaagct tttaattttg ttaaaagttg
      361 taaagaggac gttcatgtat ttgctttgga atacaaagtg ggcgatggac aacgtattta
      421 cctcgtaaca acgtatactc aactttggtt ttactataaa tcccgaagaa atctcttaca
      481 ctgctatgaa gtcattcctg aaaatgctgt gtgcaagctt tattttgatt tggaatttaa
      541 cagacttgcc aatccaggag ctgatgggaa aaagatggtt gcattactca ttgagcatgt
      601 ttgtaaggca cttcaacagt tttacagggt tcgttgttca gctgaagatg ttctcaactt
      661 ggattctagc accaatgaaa aatttagccg ccatttaata tttcaactcc atgatgtggt
      721 atttaaagat aatattcatg ttgagcacag gctccggacg tgcaggctca ggggccatgg
      781 ctcacgggcc cagctgctcc gcggcacgtg ggatcttccc agaccggggc atgaacccgt
      841 gtcccctgca tcgtcaggca gactctcaac cactgcgcca ccagggaaga ccaacaactc
      901 agttttaaaa ccagaaatcg aaagtaattt tgtgagaaaa atgttagagc ctgcttttca
      961 cttaattgct agtgaagatg atgatatgac tccagagaca atgggccatg aattttccca
     1021 tttttctgaa acaccagtta aacaaggaat ttcctttagc aaaaagtcca cagataagga
     1081 tatggaagag agctggacaa cgaattcaaa gaaactggag aggctggggt cagctaagca
     1141 aagcagtcct gatctttcat ttttaattgt gatgaataac gtaggagaaa agcatctttt
     1201 tgtagatcta ggagtttata caagaaatag aaactttcga ctgtataaat catcaaaaat
     1261 aggaaagtat gtgcctttgg aggttgctga agataacaaa ttttatcctg tacaatcgga
     1321 gaatatttcc aaagaaaatc aatatttcct ctcttctttg gtcagcaatg tcagattctc
     1381 agatacttta cgaattctga catgtgatat atctcaaaat aaacaacgag ttgagaattt
     1441 taaccatacc agtacttcag aaggaaggcc gactacagag agactaaagc tacaattggc
     1501 aaaggaggag cagctactta cattagacaa gatagtagaa accattgaag gttttcagtg
     1561 ttcaccttac cctgaaattg atcaatttgt tctcttgttg gtgaataaaa atggcattaa
     1621 aggaggaatt cggcgctgga actacttttt cccagaagaa ttattggttt atgatatttg
     1681 taaataccgc tggtgtgaaa acattggaag agcccacaag agtaataata tcatgtttcc
     1741 cattacctgc tgaagtgcgt ctcctgtttc ttctcaaaga ggaagaggag tttacaacag
     1801 atgaaacaag ggacaatgaa accaagaatc ctcatgaacc atcctctagt gcatcgtcaa
     1861 aaggtacatt ttctgatgct gactgggata atggcattga tgatgcttat attttggag
//
LOCUS       XM_032618199            2302 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus primase and DNA directed polymerase
            (PRIMPOL), transcript variant X12, mRNA.
ACCESSION   XM_032618199
VERSION     XM_032618199.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2302
                     /gene="PRIMPOL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746658"
     CDS             316..1845
                     /gene="PRIMPOL"
                     /codon_start=1
                     /product="DNA-directed primase/polymerase protein isoform
                     X10"
                     /protein_id="XP_032474090.1"
                     /db_xref="GeneID:116746658"
                     /translation="MVALLIEHVCKALQQFYRVRCSAEDVLNLDSSTNEKFSRHLIFQ
                     LHDVVFKDNIHVEHRLRTCRLRGHGSRAQLLRGTWDLPRPGHEPVSPASSGRLSTTAP
                     PGKTNNSVLKPEIESNFVRKMLEPAFHLIASEDDDMTPETMGHEFSHFSETPVKQGIS
                     FSKKSTDKDMEESWTTNSKKLERLGSAKQSSPDLSFLIVMNNVGEKHLFVDLGVYTRN
                     RNFRLYKSSKIGKYVPLEVAEDNKFYPVQSENISKENQYFLSSLVSNVRFSDTLRILT
                     CDISQNKQRVENFNHTSTSEGRPTTERLKLQLAKEEQLLTLDKIVETIEGFQCSPYPE
                     IDQFVLLLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDL
                     KNEVWYQKCHDPICKAENFKSDCFPLPAEVRLLFLLKEEEEFTTDETRDNETKNPHEP
                     SSSASSKGTFSDADWDNGIDDAYILEATEDAELAEAAENSLLGYNGIDEIPDELIIEV
                     L"
     misc_feature    1384..1578
                     /gene="PRIMPOL"
                     /note="Herpesviridae UL52/UL70 DNA primase; Region:
                     Herpes_UL52; pfam03121"
                     /db_xref="CDD:367342"
     misc_feature    1636..1842
                     /gene="PRIMPOL"
                     /note="C-terminal RPA-binding domain (RBD) of DNA-directed
                     primase/polymerase protein and similar proteins; Region:
                     PrimPol_RBD; cd22256"
                     /db_xref="CDD:412077"
     misc_feature    order(1699..1719,1723..1755)
                     /gene="PRIMPOL"
                     /note="RBM-A motif; other site"
                     /db_xref="CDD:412077"
     misc_feature    order(1810..1821,1825..1836)
                     /gene="PRIMPOL"
                     /note="RPA70N binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412077"
ORIGIN      
        1 gcctccgcgc caggtttgaa gactcggtcc cgccacagtg ggcggcttgt gtgtcctgcc
       61 agccgcagag gacccacggc ttcccgccca cgacgagcgt ctctggagga cgttcatgta
      121 tttgctttgg aatacaaagt gggcgatgga caacgtattt acctcgtaac aacgtatact
      181 caactttggt tttactataa atcccgaaga aatctcttac actgctatga agtcattcct
      241 gaaaatgctg tgtgcaagct ttattttgat ttggaattta acagacttgc caatccagga
      301 gctgatggga aaaagatggt tgcattactc attgagcatg tttgtaaggc acttcaacag
      361 ttttacaggg ttcgttgttc agctgaagat gttctcaact tggattctag caccaatgaa
      421 aaatttagcc gccatttaat atttcaactc catgatgtgg tatttaaaga taatattcat
      481 gttgagcaca ggctccggac gtgcaggctc aggggccatg gctcacgggc ccagctgctc
      541 cgcggcacgt gggatcttcc cagaccgggg catgaacccg tgtcccctgc atcgtcaggc
      601 agactctcaa ccactgcgcc accagggaag accaacaact cagttttaaa accagaaatc
      661 gaaagtaatt ttgtgagaaa aatgttagag cctgcttttc acttaattgc tagtgaagat
      721 gatgatatga ctccagagac aatgggccat gaattttccc atttttctga aacaccagtt
      781 aaacaaggaa tttcctttag caaaaagtcc acagataagg atatggaaga gagctggaca
      841 acgaattcaa agaaactgga gaggctgggg tcagctaagc aaagcagtcc tgatctttca
      901 tttttaattg tgatgaataa cgtaggagaa aagcatcttt ttgtagatct aggagtttat
      961 acaagaaata gaaactttcg actgtataaa tcatcaaaaa taggaaagta tgtgcctttg
     1021 gaggttgctg aagataacaa attttatcct gtacaatcgg agaatatttc caaagaaaat
     1081 caatatttcc tctcttcttt ggtcagcaat gtcagattct cagatacttt acgaattctg
     1141 acatgtgata tatctcaaaa taaacaacga gttgagaatt ttaaccatac cagtacttca
     1201 gaaggaaggc cgactacaga gagactaaag ctacaattgg caaaggagga gcagctactt
     1261 acattagaca agatagtaga aaccattgaa ggttttcagt gttcacctta ccctgaaatt
     1321 gatcaatttg ttctcttgtt ggtgaataaa aatggcatta aaggaggaat tcggcgctgg
     1381 aactactttt tcccagaaga attattggtt tatgatattt gtaaataccg ctggtgtgaa
     1441 aacattggaa gagcccacaa gagtaataat atcatgattt tggttgacct gaaaaatgaa
     1501 gtttggtatc aaaaatgtca tgaccctata tgtaaagcag aaaacttcaa atctgactgt
     1561 ttcccattac ctgctgaagt gcgtctcctg tttcttctca aagaggaaga ggagtttaca
     1621 acagatgaaa caagggacaa tgaaaccaag aatcctcatg aaccatcctc tagtgcatcg
     1681 tcaaaaggta cattttctga tgctgactgg gataatggca ttgatgatgc ttatattttg
     1741 gaggctacag aagatgctga attggcagaa gctgcagaga acagtcttct tggttataat
     1801 ggaatcgatg aaattcctga tgaactaatt atagaagtat tataagagta gctaattatg
     1861 gacacttaaa taactaggcg gtaatctgct tgaaaacatt tagtaacaaa ctagtaactt
     1921 acaaagcctg ttgtatcagc taagttttat tactttgctt ccaaatctta tttattgaag
     1981 taaaccagtt ttattgaaaa ttagctccag tgtgcttcaa ttcagtatga gtctccttat
     2041 ttgattaacc agttattagt ctttgttcgt atcagcttaa ttttgcatgt ttatttttac
     2101 agtaaaactt ttttatgtct agggctgatt aggtgtcaac attttaaaac attttgaaac
     2161 ttattacttg acattaacca gaaaaattaa ctatggcctc taaaactcta tacctaacca
     2221 tttaatttta atgacaaagt aatattaaat tctggtgaca agaccataca accagcctga
     2281 acaaatagac aagtttactt tt
//
LOCUS       XM_032618200            2303 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centromere protein U (CENPU), transcript
            variant X1, mRNA.
ACCESSION   XM_032618200
VERSION     XM_032618200.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2303
                     /gene="CENPU"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746659"
     CDS             1095..2267
                     /gene="CENPU"
                     /codon_start=1
                     /product="centromere protein U isoform X1"
                     /protein_id="XP_032474091.1"
                     /db_xref="GeneID:116746659"
                     /translation="MAAPRQGRRSGTRYSKNTVGRTHSTKDEAGQKHKPTDVFDFPDN
                     SGISSIGRLGENEKDEEPYETFDPPLHSTAIYADEEEFSKHCGSSLPSTPQGKEAKRS
                     SDTSDVEASENESVKISAKKPRRKLKPISDESESTEESDVRRRVKPAENLSTQREAVS
                     ATASSEPSEKPAESVTLKKKTQKKKMFRGKRKKPRSEATDLDTSDCVPIWCLKEKKTS
                     DIMELDVVLSAFENILLEYKQKTDSRICKEAINKFHSNLKEELIKMLKEVQMLKTLKR
                     KNTKMISDIEKKRQRLIEVQDELLRLEPELNQLQIKYDELKERKASLRSAAYFLSNLK
                     QLHQAYSDIQEEEPNVKETYDSSSLPALLFKARPLLGAENHLQNINYQLEKLLDQK"
     misc_feature    1518..1970
                     /gene="CENPU"
                     /note="CENP-A nucleosome associated complex (NAC) subunit;
                     Region: CENP-U; pfam13097"
                     /db_xref="CDD:463785"
ORIGIN      
        1 aattaataca tcatttaggg atatatcaag gtagaaaaac atgggaatga gaaacacaaa
       61 atcagaagag tggttatctg tggaaggaat gaccgttatt actttcctaa cccagtggtg
      121 agcacatagg tgctcctttt tatctttacg ttatatatgt tatattcttt agtacgcatg
      181 aaatataata atttttattg tggtaactgt acatgacata aagttcagca ttttaaccat
      241 ttttaactgt acaacttagt gtagttactt atgtaattca cactgctttg caaccatcca
      301 ccattaacca cctagaactt tttcatcatc ccaaactgtg cttttggctg tcacatccaa
      361 gaaatcattg ccaagtccaa tgtcgtgaag cttttgccct atgttttctt ctaagagttt
      421 tagctcttac aattaggtct ttgatccatt ttaagttcat ttttatttat ggtgtgataa
      481 aggtccaaca tcattctttt gcaggatagt acatttttaa acacaaagaa tcagagaata
      541 ttaaaagggg ccctccccat ttacgaatga agaaactggg gtagaaataa taagccaagc
      601 tcacaccact gcttcagggc agcagcaggg taaaagtcaa agcctatttc caatgcatta
      661 cactagacaa ctgcgcaggc tcctaagcac ccagcgcgcc ccgccctggc tttggatcta
      721 cccctcgcgg gagagcgccc tccgactttc cggcactcgc tcctcccctt cctcgccccc
      781 tggggcgttc tggcggctca ggagcgcgga aaacgtgcgc ggcggacgtg gggtgaggga
      841 aaacccggga aacctttggc gtctcgtgga cccgtcagga actgcttgta aggcgtaaac
      901 tccagctccg ctttcgcgct gtgccaggcc gagttttctc tcgcgctcta ggacggggag
      961 gagccctggc cctgtaggaa gcaagctcgg gagggggcgt gcccgcctgc tctgcccgga
     1021 ttggccgctg gaagcagcgc ggggtttggc gggaacttcg ggagctgcgc ccgcgcagtg
     1081 aacggtaggc tgagatggcc gcgccgcggc aagggcggcg ctcgggtacg agatattcaa
     1141 agaacactgt aggaagaaca cattccacga aagatgaagc tggccaaaag cacaagccta
     1201 ccgatgtatt tgattttcct gataattctg ggatctcaag catcggcagg ctgggagaaa
     1261 atgagaaaga tgaagaaccc tatgaaacct ttgaccctcc tttacacagc actgctatat
     1321 atgctgatga ggaagaattc tccaagcact gcgggtcatc tctcccctca actcctcaag
     1381 gaaaagaagc aaaaagaagt tcggacacgt ctgacgttga agcaagtgaa aatgagtctg
     1441 taaaaattag tgcaaaaaag ccaagaagaa aactcaagcc cattagtgat gaatctgaaa
     1501 gcactgaaga aagtgatgta agaagaagag ttaaaccagc agagaactta agtacacaac
     1561 gtgaagctgt ttcagctaca gcatcttcag aaccttcaga gaaaccagct gaatcggtca
     1621 cgcttaaaaa gaaaactcag aaaaagaaga tgtttcgtgg caaaaggaag aaaccaagaa
     1681 gtgaagccac agacttggat acttccgact gtgtacctat ttggtgttta aaagaaaaga
     1741 aaaccagtga catcatggag ttagatgtcg ttttgtctgc atttgagaac atcctcctag
     1801 agtataaaca aaaaacagac tctagaattt gtaaggaagc catcaacaaa tttcattcta
     1861 atttgaaaga agaactcatc aaaatgctta aagaagtcca gatgttgaaa actctgaaaa
     1921 ggaagaacac taagatgatc tcagatatcg aaaagaaaag gcaacgtttg attgaagtcc
     1981 aggatgaact gcttcggttg gaaccagagc tgaaccaact acaaataaag tatgatgaac
     2041 ttaaggagag aaaagcttcc cttaggagtg cagcgtattt cttgtctaat ttaaaacagc
     2101 ttcatcaagc ttattcagat attcaagagg aagaaccaaa tgtaaaggaa acgtatgact
     2161 catccagcct tccagctctg ctattcaaag caagacccct tttgggagct gaaaaccatc
     2221 tgcaaaatat caactatcaa ttagagaagc tcctcgacca gaaatgagac cagtctacta
     2281 aagtgtgcac atgtaaaaga taa
//
LOCUS       XM_032618202            2257 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centromere protein U (CENPU), transcript
            variant X2, mRNA.
ACCESSION   XM_032618202
VERSION     XM_032618202.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2257
                     /gene="CENPU"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746659"
     CDS             1097..2221
                     /gene="CENPU"
                     /codon_start=1
                     /product="centromere protein U isoform X2"
                     /protein_id="XP_032474093.1"
                     /db_xref="GeneID:116746659"
                     /translation="MAAPRQGRRSGTRYSKNTVGRTHSTKDEAGQKHKPTDVFDFPDN
                     SGISSIGRLGENEKDEEPYETFDPPLHSTAIYADEEEFSKHCGSSLPSTPQGKEAKRS
                     SDTSDVEASENESVKISAKKPRRKLKPISDESESTEESDVRRRVKPAENLSTQREAVS
                     ATASSEPSEKPAESVTLKKKTQKKKMFRGKRKKPRSEATDLDTSDCVPIWCLKEKKTS
                     DIMELDVVLSAFENILLEYKQKTDSRICKEAINKFHSNLKEELIKMMISDIEKKRQRL
                     IEVQDELLRLEPELNQLQIKYDELKERKASLRSAAYFLSNLKQLHQAYSDIQEEEPNV
                     KETYDSSSLPALLFKARPLLGAENHLQNINYQLEKLLDQK"
     misc_feature    1520..1924
                     /gene="CENPU"
                     /note="CENP-A nucleosome associated complex (NAC) subunit;
                     Region: CENP-U; pfam13097"
                     /db_xref="CDD:463785"
ORIGIN      
        1 ataattaata catcatttag ggatatatca aggtagaaaa acatgggaat gagaaacaca
       61 aaatcagaag agtggttatc tgtggaagga atgaccgtta ttactttcct aacccagtgg
      121 tgagcacata ggtgctcctt tttatcttta cgttatatat gttatattct ttagtacgca
      181 tgaaatataa taatttttat tgtggtaact gtacatgaca taaagttcag cattttaacc
      241 atttttaact gtacaactta gtgtagttac ttatgtaatt cacactgctt tgcaaccatc
      301 caccattaac cacctagaac tttttcatca tcccaaactg tgcttttggc tgtcacatcc
      361 aagaaatcat tgccaagtcc aatgtcgtga agcttttgcc ctatgttttc ttctaagagt
      421 tttagctctt acaattaggt ctttgatcca ttttaagttc atttttattt atggtgtgat
      481 aaaggtccaa catcattctt ttgcaggata gtacattttt aaacacaaag aatcagagaa
      541 tattaaaagg ggccctcccc atttacgaat gaagaaactg gggtagaaat aataagccaa
      601 gctcacacca ctgcttcagg gcagcagcag ggtaaaagtc aaagcctatt tccaatgcat
      661 tacactagac aactgcgcag gctcctaagc acccagcgcg ccccgccctg gctttggatc
      721 tacccctcgc gggagagcgc cctccgactt tccggcactc gctcctcccc ttcctcgccc
      781 cctggggcgt tctggcggct caggagcgcg gaaaacgtgc gcggcggacg tggggtgagg
      841 gaaaacccgg gaaacctttg gcgtctcgtg gacccgtcag gaactgcttg taaggcgtaa
      901 actccagctc cgctttcgcg ctgtgccagg ccgagttttc tctcgcgctc taggacgggg
      961 aggagccctg gccctgtagg aagcaagctc gggagggggc gtgcccgcct gctctgcccg
     1021 gattggccgc tggaagcagc gcggggtttg gcgggaactt cgggagctgc gcccgcgcag
     1081 tgaacggtag gctgagatgg ccgcgccgcg gcaagggcgg cgctcgggta cgagatattc
     1141 aaagaacact gtaggaagaa cacattccac gaaagatgaa gctggccaaa agcacaagcc
     1201 taccgatgta tttgattttc ctgataattc tgggatctca agcatcggca ggctgggaga
     1261 aaatgagaaa gatgaagaac cctatgaaac ctttgaccct cctttacaca gcactgctat
     1321 atatgctgat gaggaagaat tctccaagca ctgcgggtca tctctcccct caactcctca
     1381 aggaaaagaa gcaaaaagaa gttcggacac gtctgacgtt gaagcaagtg aaaatgagtc
     1441 tgtaaaaatt agtgcaaaaa agccaagaag aaaactcaag cccattagtg atgaatctga
     1501 aagcactgaa gaaagtgatg taagaagaag agttaaacca gcagagaact taagtacaca
     1561 acgtgaagct gtttcagcta cagcatcttc agaaccttca gagaaaccag ctgaatcggt
     1621 cacgcttaaa aagaaaactc agaaaaagaa gatgtttcgt ggcaaaagga agaaaccaag
     1681 aagtgaagcc acagacttgg atacttccga ctgtgtacct atttggtgtt taaaagaaaa
     1741 gaaaaccagt gacatcatgg agttagatgt cgttttgtct gcatttgaga acatcctcct
     1801 agagtataaa caaaaaacag actctagaat ttgtaaggaa gccatcaaca aatttcattc
     1861 taatttgaaa gaagaactca tcaaaatgat gatctcagat atcgaaaaga aaaggcaacg
     1921 tttgattgaa gtccaggatg aactgcttcg gttggaacca gagctgaacc aactacaaat
     1981 aaagtatgat gaacttaagg agagaaaagc ttcccttagg agtgcagcgt atttcttgtc
     2041 taatttaaaa cagcttcatc aagcttattc agatattcaa gaggaagaac caaatgtaaa
     2101 ggaaacgtat gactcatcca gccttccagc tctgctattc aaagcaagac cccttttggg
     2161 agctgaaaac catctgcaaa atatcaacta tcaattagag aagctcctcg accagaaatg
     2221 agaccagtct actaaagtgt gcacatgtaa aagataa
//
LOCUS       XM_032618203            2368 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus centromere protein U (CENPU), transcript
            variant X3, mRNA.
ACCESSION   XM_032618203
VERSION     XM_032618203.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2368
                     /gene="CENPU"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 8 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746659"
     CDS             1097..2332
                     /gene="CENPU"
                     /codon_start=1
                     /product="centromere protein U isoform X3"
                     /protein_id="XP_032474094.1"
                     /db_xref="GeneID:116746659"
                     /translation="MAAPRQGRRSGTRYSKNTVGRTHSTKDEAGQKHKPTDVFDFPDN
                     SGISSIGRLGENEKDEEPYETFDPPLHSTAIYADEEEFSKHCGSSLPSTPQGKEAKRS
                     SDTSDVEASENESVKISAKKPRRKLKPISDESESTEESDVRRRVKPAENLSTQREAVS
                     ATASSEPSEKPAESVTLKKVGPLGAKPSVEKETLETKSQLKTQKKKMFRGKRKKPRSE
                     ATDLDTSDCVPIWCLKEKKTSDIMELDVVLSAFENILLEYKQKTDSRICKEAINKFHS
                     NLKEELIKMLKEVQMLKTLKRKNTKMISDIEKKRQRLIEVQDELLRLEPELNQLQIKY
                     DELKERKASLRSAAYFLSNLKQLHQAYSDIQEEEPNVKETYDSSSLPALLFKARPLLG
                     AENHLQNINYQLEKLLDQK"
     misc_feature    1520..2035
                     /gene="CENPU"
                     /note="CENP-A nucleosome associated complex (NAC) subunit;
                     Region: CENP-U; pfam13097"
                     /db_xref="CDD:463785"
ORIGIN      
        1 ataattaata catcatttag ggatatatca aggtagaaaa acatgggaat gagaaacaca
       61 aaatcagaag agtggttatc tgtggaagga atgaccgtta ttactttcct aacccagtgg
      121 tgagcacata ggtgctcctt tttatcttta cgttatatat gttatattct ttagtacgca
      181 tgaaatataa taatttttat tgtggtaact gtacatgaca taaagttcag cattttaacc
      241 atttttaact gtacaactta gtgtagttac ttatgtaatt cacactgctt tgcaaccatc
      301 caccattaac cacctagaac tttttcatca tcccaaactg tgcttttggc tgtcacatcc
      361 aagaaatcat tgccaagtcc aatgtcgtga agcttttgcc ctatgttttc ttctaagagt
      421 tttagctctt acaattaggt ctttgatcca ttttaagttc atttttattt atggtgtgat
      481 aaaggtccaa catcattctt ttgcaggata gtacattttt aaacacaaag aatcagagaa
      541 tattaaaagg ggccctcccc atttacgaat gaagaaactg gggtagaaat aataagccaa
      601 gctcacacca ctgcttcagg gcagcagcag ggtaaaagtc aaagcctatt tccaatgcat
      661 tacactagac aactgcgcag gctcctaagc acccagcgcg ccccgccctg gctttggatc
      721 tacccctcgc gggagagcgc cctccgactt tccggcactc gctcctcccc ttcctcgccc
      781 cctggggcgt tctggcggct caggagcgcg gaaaacgtgc gcggcggacg tggggtgagg
      841 gaaaacccgg gaaacctttg gcgtctcgtg gacccgtcag gaactgcttg taaggcgtaa
      901 actccagctc cgctttcgcg ctgtgccagg ccgagttttc tctcgcgctc taggacgggg
      961 aggagccctg gccctgtagg aagcaagctc gggagggggc gtgcccgcct gctctgcccg
     1021 gattggccgc tggaagcagc gcggggtttg gcgggaactt cgggagctgc gcccgcgcag
     1081 tgaacggtag gctgagatgg ccgcgccgcg gcaagggcgg cgctcgggta cgagatattc
     1141 aaagaacact gtaggaagaa cacattccac gaaagatgaa gctggccaaa agcacaagcc
     1201 taccgatgta tttgattttc ctgataattc tgggatctca agcatcggca ggctgggaga
     1261 aaatgagaaa gatgaagaac cctatgaaac ctttgaccct cctttacaca gcactgctat
     1321 atatgctgat gaggaagaat tctccaagca ctgcgggtca tctctcccct caactcctca
     1381 aggaaaagaa gcaaaaagaa gttcggacac gtctgacgtt gaagcaagtg aaaatgagtc
     1441 tgtaaaaatt agtgcaaaaa agccaagaag aaaactcaag cccattagtg atgaatctga
     1501 aagcactgaa gaaagtgatg taagaagaag agttaaacca gcagagaact taagtacaca
     1561 acgtgaagct gtttcagcta cagcatcttc agaaccttca gagaaaccag ctgaatcggt
     1621 cacgcttaaa aaggtgggac cccttggtgc caagccctct gttgaaaaag agaccctgga
     1681 aaccaaaagt caactgaaaa ctcagaaaaa gaagatgttt cgtggcaaaa ggaagaaacc
     1741 aagaagtgaa gccacagact tggatacttc cgactgtgta cctatttggt gtttaaaaga
     1801 aaagaaaacc agtgacatca tggagttaga tgtcgttttg tctgcatttg agaacatcct
     1861 cctagagtat aaacaaaaaa cagactctag aatttgtaag gaagccatca acaaatttca
     1921 ttctaatttg aaagaagaac tcatcaaaat gcttaaagaa gtccagatgt tgaaaactct
     1981 gaaaaggaag aacactaaga tgatctcaga tatcgaaaag aaaaggcaac gtttgattga
     2041 agtccaggat gaactgcttc ggttggaacc agagctgaac caactacaaa taaagtatga
     2101 tgaacttaag gagagaaaag cttcccttag gagtgcagcg tatttcttgt ctaatttaaa
     2161 acagcttcat caagcttatt cagatattca agaggaagaa ccaaatgtaa aggaaacgta
     2221 tgactcatcc agccttccag ctctgctatt caaagcaaga ccccttttgg gagctgaaaa
     2281 ccatctgcaa aatatcaact atcaattaga gaagctcctc gaccagaaat gagaccagtc
     2341 tactaaagtg tgcacatgta aaagataa
//
LOCUS       XM_032618204            3379 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus caspase 3 (CASP3), transcript variant X1,
            mRNA.
ACCESSION   XM_032618204
VERSION     XM_032618204.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3379
                     /gene="CASP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 13 long SRA reads, 24
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746660"
     CDS             426..1253
                     /gene="CASP3"
                     /codon_start=1
                     /product="caspase-3"
                     /protein_id="XP_032474095.1"
                     /db_xref="GeneID:116746660"
                     /translation="MENNENSVDSKSIKTSETKILHGSKSMDSGISLDYSYKMDYPER
                     GLCIIINNKNFHESTGMACRSGTDVDAANLWETFTNLKYEVRNKNDLTCEEILELMYS
                     VSKEDHSKRSSFICVLLSHGEEGKIFGTNGPVDLKKLTGFFRGDCCISLTGKPKLFVI
                     QACRGTELDCGIETDSGAEDDMACQKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQS
                     LCAMLKQYAHKLELMHILTRVNRKVAIEFESFSNDSTFHAKKQIPCIVSMLTKELYF"
     misc_feature    534..1250
                     /gene="CASP3"
                     /note="Caspase, interleukin-1 beta converting enzyme (ICE)
                     homologues; Region: CASc; smart00115"
                     /db_xref="CDD:214521"
     misc_feature    order(615..617,789..791,906..908,927..929,1035..1052,
                     1062..1067)
                     /gene="CASP3"
                     /note="substrate pocket [chemical binding]; other site"
                     /db_xref="CDD:237997"
     misc_feature    order(786..788,912..914)
                     /gene="CASP3"
                     /note="active site"
                     /db_xref="CDD:237997"
     misc_feature    order(930..932,990..995,1014..1016,1023..1025,1032..1034,
                     1101..1103,1125..1127,1143..1145,1203..1205,1218..1223,
                     1227..1229,1236..1241)
                     /gene="CASP3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:237997"
     misc_feature    order(933..935,987..989)
                     /gene="CASP3"
                     /note="proteolytic cleavage site [active]"
                     /db_xref="CDD:237997"
ORIGIN      
        1 ggggcaggac ggggactgaa agggagcgga gaccaggaag ggcctagaat ggcccggaag
       61 cgtgcctgga agccaggagc tcccgggacc cgtgagtggg cggtgctctc gggctgagcg
      121 gcgttctcag gcgcggcggg acccgtgaag gggtggtgtt ctcgggcgga gcggtgttct
      181 cgggcggggc ggggcctgtg agggggcggt gttctcgggc agagggagcc ggggcctgac
      241 tgacgtgtcg gcgcggcgcg gaggtcgcag agctgagggg aggggccgga gtggggccag
      301 agtgggcggg gcctgttcgg gcgcctacct ctgagcgcgg ctgcggcgga agcagagcag
      361 gaaccgatcc cagcagagcg agtcggtggc agcggcgtgg ggactgagag ttaataaaag
      421 tatccatgga gaacaatgaa aattcagtgg attcaaaatc cattaaaact tcagagacaa
      481 agatcttaca tggaagcaaa tcaatggact ctggaatatc cttggactat agttacaaaa
      541 tggattatcc tgaaaggggt ttatgtataa taattaataa taagaacttt catgaaagta
      601 ctgggatggc atgtcggtct ggtacagacg tagatgcagc aaacctctgg gaaaccttca
      661 cgaacttgaa atatgaagtt aggaataaaa atgatcttac atgtgaagaa attttggaat
      721 taatgtacag tgtttctaaa gaagatcata gcaaaaggag cagttttatt tgcgtgcttc
      781 taagccatgg cgaggaagga aaaatttttg gaacaaatgg acctgtcgat ctgaaaaaat
      841 taacaggttt cttcagaggg gactgttgta taagcctaac tggcaaacct aaactttttg
      901 ttattcaggc ttgccgaggc acagaactgg actgtggtat tgagacagac agtggtgctg
      961 aggatgacat ggcctgtcag aaaataccag ttgaggcgga cttcttgtat gcatattcta
     1021 cagcacctgg ttactattcc tggcgaaatt caaaggacgg atcctggttc atccagtcac
     1081 tttgtgcaat gctgaaacag tacgctcaca agcttgagct tatgcatatt ctcactcggg
     1141 ttaaccgaaa ggtagcaata gaattcgagt ccttttccaa tgattctact tttcatgcaa
     1201 agaaacagat tccttgtatt gtgtctatgc tcacaaaaga actgtatttt taatcactga
     1261 agaaacggat gatttttttt tttaatctgt atgccaagtg aggaaacggt gtgactgaaa
     1321 aactatattt tcctctctca tttaaatcta atctaatccc ccaggtgata catggaaaca
     1381 tgtcactttc atagcaataa aactactatg aagctacctc aaacacaatc aggtagttga
     1441 aattgaattt aattaagaat aaataaaaat ggataatggt acagtcatta tgagaggaaa
     1501 tgattgtaaa ttaacagctc tcataattag caagttttag tgattatgct atgctacaga
     1561 ttttcaagga attatggaag aatttaaaca ttgctgtaat gtgtttcagt gatattgaca
     1621 atgctcttgt ttcagagaac atgttctggt ttttgtcaaa ctatagacat gatgatgtgg
     1681 aataatgtat cctcgaactt ggtggtccat gtgcatggtc aaatgcttga agaccttgat
     1741 cttagaatta gtatttggag acaagacaat agtattttta catcacccat ctgagcacat
     1801 ggtgttgtga tgtctgtccc gagtatgtcc ttgttgttta aaaaaaaaga aaaaatcatg
     1861 tttagtattg aaaaaggaac taaatgtttt acttgagaat atgcaagaaa actaagttga
     1921 ctctctcagg ttaaatgcaa cattaataga gggagacaga gttaggacta taaggtgctg
     1981 aaatgcaact cttcccacca gctgctgggc ctcgcattcc cacagagtat ctgaagggct
     2041 cttatgcaaa acctcaaact ttgatcacac tgatagcagc atgaattgaa gaaattctat
     2101 aggaacatac taaaatacaa cttacagaat acacagtgag gtgtgaggaa gaaacagtaa
     2161 atcaatcagc cgggcacttg taattagaag atggcttgag cctgaacagg gacacagcgc
     2221 atcctatgtc atgaaggcag agccatagac tacggcttca ggaaaaggaa tgctggctag
     2281 tttcttcatg tacatggagg tgtacatgga ggatgctccc aaggcaagaa gctccaagaa
     2341 agtgaaccaa atcaaacttc tgaaatggaa attttcaaaa gatggtgaga gtcataataa
     2401 aagttgtagc actttttttt tttcaatttt ttcaatgaca gcttttaatt ggatattaaa
     2461 ttcttatctg cctttctgca gatagcacat tatataaaat acagctagca ccattaccac
     2521 tgtactggat acactgaata acaattcact tctcacttta caccgagggg gagaagggct
     2581 gcagttgtca gcctgtcaga aattaagtat gtaaattaat gcttaagtgt atgaatatga
     2641 atatgattta taagacgctc ggagtgttgt tgggggaaaa tcctgaggtc tctcattccc
     2701 cttcaacgat aacaagtgct tagtgacctt gacagacggc acgcagacat gggtgtggcc
     2761 acgtgtgcac ttggccacca agctttggga gctgaagtac tcccgaagag caaatcctgg
     2821 actccttctg gaatgtccct ttctgccatc catgaatgtc agcccataaa agcaatttca
     2881 ttagcatttc ctcattttcc aaaataagca gtgagtgtgg cccaataatc tgggccctca
     2941 accatccttt gccaaggatg ggaaaaatca tagcactctt tgtagtaaaa tttttgagca
     3001 tgttaagttg tattttgttg acatttataa tcaaaggaga atgatactgt tgtgatcata
     3061 tacggttctc tgaaatgaaa ggaccatggc atgcaggacg ttagcagtca ttcagtcttc
     3121 cctcctttgg tgcccaggga aactgaaggc cagagaggag aagcagcaca gccctgagcc
     3181 gtggacagca ggctaggagc ctcctagctc aggagatgtt gagctgtccc tgcatcgctg
     3241 tatcctgctg cttttcagtc tgacatttcc tgtgagcctt cttttgctga aagaaaggaa
     3301 ctcacgttta taaatgaaag ctttttgttt tggctatgtc tgtaattttt tcgaagtcaa
     3361 tgaagtatct taaagtgtg
//
LOCUS       XM_032618205            3893 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus caspase 3 (CASP3), transcript variant X2,
            mRNA.
ACCESSION   XM_032618205
VERSION     XM_032618205.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3893
                     /gene="CASP3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 7 long SRA reads, 23
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746660"
     CDS             940..1767
                     /gene="CASP3"
                     /codon_start=1
                     /product="caspase-3"
                     /protein_id="XP_032474096.1"
                     /db_xref="GeneID:116746660"
                     /translation="MENNENSVDSKSIKTSETKILHGSKSMDSGISLDYSYKMDYPER
                     GLCIIINNKNFHESTGMACRSGTDVDAANLWETFTNLKYEVRNKNDLTCEEILELMYS
                     VSKEDHSKRSSFICVLLSHGEEGKIFGTNGPVDLKKLTGFFRGDCCISLTGKPKLFVI
                     QACRGTELDCGIETDSGAEDDMACQKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQS
                     LCAMLKQYAHKLELMHILTRVNRKVAIEFESFSNDSTFHAKKQIPCIVSMLTKELYF"
     misc_feature    1048..1764
                     /gene="CASP3"
                     /note="Caspase, interleukin-1 beta converting enzyme (ICE)
                     homologues; Region: CASc; smart00115"
                     /db_xref="CDD:214521"
     misc_feature    order(1129..1131,1303..1305,1420..1422,1441..1443,
                     1549..1566,1576..1581)
                     /gene="CASP3"
                     /note="substrate pocket [chemical binding]; other site"
                     /db_xref="CDD:237997"
     misc_feature    order(1300..1302,1426..1428)
                     /gene="CASP3"
                     /note="active site"
                     /db_xref="CDD:237997"
     misc_feature    order(1444..1446,1504..1509,1528..1530,1537..1539,
                     1546..1548,1615..1617,1639..1641,1657..1659,1717..1719,
                     1732..1737,1741..1743,1750..1755)
                     /gene="CASP3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:237997"
     misc_feature    order(1447..1449,1501..1503)
                     /gene="CASP3"
                     /note="proteolytic cleavage site [active]"
                     /db_xref="CDD:237997"
ORIGIN      
        1 tccgcggcat gtgggatccg gcaggcagac tctcaaccac tgcgccacca gggaagcccc
       61 agagtgatct ttttaaagca tgctgtccct cctctgcttc aagcactcca atggtttctc
      121 cttcttgcaa caaggataga atcaaagctc ctcttggctc ctgaggccct atatgatctt
      181 gcctttccca cttcaattcc cttcactcct tcccttcctt ttccatgcac taatcgaact
      241 ggttttcttt tctgcacctt gaatacacga aactctttca gggcctttgt acttgctgga
      301 cgtttcccca gcaaggcagc ctctctaggt ggcctctatg tcatttagct ctttctgtca
      361 atgtcacctc agagatggct ttcccagcct cctcaaagta gctcacacta ccagtctctc
      421 tattactcta ccctattttg ttttcttcat agcccctatc agtatctgaa atcttattat
      481 ctgtaattat tcttcctctc tagaatgaaa gtttcttgaa ggtaggaatt ttgttttgtc
      541 ttccactctg tcctagagcc tagaatggca cctggcacaa agaacgtgct cacgaagtat
      601 ttgcttattg actgcaagat ggttcatccc agttgtacac agcatcctgc cttagttttc
      661 tagaaaaact gcaggaagta agatgataga aaagcaaaga gcttttgtag aaatgcacag
      721 caaagactga ctttgagaga aggtgaaacg ctaccccctt cggtggttcc aaaatggtga
      781 cacttcctct ccatattttt ttctccatct tcccccacga taggtgcaca ccgtacttag
      841 ggacagagga ggaaggaact gagctttgga gaagagaaga gatgtctcct taattttcaa
      901 gagaccttaa aaggggggac tttgttaata aaagtatcca tggagaacaa tgaaaattca
      961 gtggattcaa aatccattaa aacttcagag acaaagatct tacatggaag caaatcaatg
     1021 gactctggaa tatccttgga ctatagttac aaaatggatt atcctgaaag gggtttatgt
     1081 ataataatta ataataagaa ctttcatgaa agtactggga tggcatgtcg gtctggtaca
     1141 gacgtagatg cagcaaacct ctgggaaacc ttcacgaact tgaaatatga agttaggaat
     1201 aaaaatgatc ttacatgtga agaaattttg gaattaatgt acagtgtttc taaagaagat
     1261 catagcaaaa ggagcagttt tatttgcgtg cttctaagcc atggcgagga aggaaaaatt
     1321 tttggaacaa atggacctgt cgatctgaaa aaattaacag gtttcttcag aggggactgt
     1381 tgtataagcc taactggcaa acctaaactt tttgttattc aggcttgccg aggcacagaa
     1441 ctggactgtg gtattgagac agacagtggt gctgaggatg acatggcctg tcagaaaata
     1501 ccagttgagg cggacttctt gtatgcatat tctacagcac ctggttacta ttcctggcga
     1561 aattcaaagg acggatcctg gttcatccag tcactttgtg caatgctgaa acagtacgct
     1621 cacaagcttg agcttatgca tattctcact cgggttaacc gaaaggtagc aatagaattc
     1681 gagtcctttt ccaatgattc tacttttcat gcaaagaaac agattccttg tattgtgtct
     1741 atgctcacaa aagaactgta tttttaatca ctgaagaaac ggatgatttt tttttttaat
     1801 ctgtatgcca agtgaggaaa cggtgtgact gaaaaactat attttcctct ctcatttaaa
     1861 tctaatctaa tcccccaggt gatacatgga aacatgtcac tttcatagca ataaaactac
     1921 tatgaagcta cctcaaacac aatcaggtag ttgaaattga atttaattaa gaataaataa
     1981 aaatggataa tggtacagtc attatgagag gaaatgattg taaattaaca gctctcataa
     2041 ttagcaagtt ttagtgatta tgctatgcta cagattttca aggaattatg gaagaattta
     2101 aacattgctg taatgtgttt cagtgatatt gacaatgctc ttgtttcaga gaacatgttc
     2161 tggtttttgt caaactatag acatgatgat gtggaataat gtatcctcga acttggtggt
     2221 ccatgtgcat ggtcaaatgc ttgaagacct tgatcttaga attagtattt ggagacaaga
     2281 caatagtatt tttacatcac ccatctgagc acatggtgtt gtgatgtctg tcccgagtat
     2341 gtccttgttg tttaaaaaaa aagaaaaaat catgtttagt attgaaaaag gaactaaatg
     2401 ttttacttga gaatatgcaa gaaaactaag ttgactctct caggttaaat gcaacattaa
     2461 tagagggaga cagagttagg actataaggt gctgaaatgc aactcttccc accagctgct
     2521 gggcctcgca ttcccacaga gtatctgaag ggctcttatg caaaacctca aactttgatc
     2581 acactgatag cagcatgaat tgaagaaatt ctataggaac atactaaaat acaacttaca
     2641 gaatacacag tgaggtgtga ggaagaaaca gtaaatcaat cagccgggca cttgtaatta
     2701 gaagatggct tgagcctgaa cagggacaca gcgcatccta tgtcatgaag gcagagccat
     2761 agactacggc ttcaggaaaa ggaatgctgg ctagtttctt catgtacatg gaggtgtaca
     2821 tggaggatgc tcccaaggca agaagctcca agaaagtgaa ccaaatcaaa cttctgaaat
     2881 ggaaattttc aaaagatggt gagagtcata ataaaagttg tagcactttt tttttttcaa
     2941 ttttttcaat gacagctttt aattggatat taaattctta tctgcctttc tgcagatagc
     3001 acattatata aaatacagct agcaccatta ccactgtact ggatacactg aataacaatt
     3061 cacttctcac tttacaccga gggggagaag ggctgcagtt gtcagcctgt cagaaattaa
     3121 gtatgtaaat taatgcttaa gtgtatgaat atgaatatga tttataagac gctcggagtg
     3181 ttgttggggg aaaatcctga ggtctctcat tccccttcaa cgataacaag tgcttagtga
     3241 ccttgacaga cggcacgcag acatgggtgt ggccacgtgt gcacttggcc accaagcttt
     3301 gggagctgaa gtactcccga agagcaaatc ctggactcct tctggaatgt ccctttctgc
     3361 catccatgaa tgtcagccca taaaagcaat ttcattagca tttcctcatt ttccaaaata
     3421 agcagtgagt gtggcccaat aatctgggcc ctcaaccatc ctttgccaag gatgggaaaa
     3481 atcatagcac tctttgtagt aaaatttttg agcatgttaa gttgtatttt gttgacattt
     3541 ataatcaaag gagaatgata ctgttgtgat catatacggt tctctgaaat gaaaggacca
     3601 tggcatgcag gacgttagca gtcattcagt cttccctcct ttggtgccca gggaaactga
     3661 aggccagaga ggagaagcag cacagccctg agccgtggac agcaggctag gagcctccta
     3721 gctcaggaga tgttgagctg tccctgcatc gctgtatcct gctgcttttc agtctgacat
     3781 ttcctgtgag ccttcttttg ctgaaagaaa ggaactcacg tttataaatg aaagcttttt
     3841 gttttggcta tgtctgtaat tttttcgaag tcaatgaagt atcttaaagt gtg
//
LOCUS       XR_004347825            4220 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X1, ncRNA.
ACCESSION   XR_004347825
VERSION     XR_004347825.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4220
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4220
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..4220
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X1"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaaggat ggacatccta ggaccgtcta cctggatgca tcagaactca tttcttttca
      361 agggagtcga gaaaggacag gttacttggc catgcagcaa ttgacctctc catgactgaa
      421 gcttaaagat acattcaaga aagtttcatc tccactacat ccaaaaggtg cacgacaatt
      481 cacacgtaca cctctcggcg ctgcctcctt ctcctgagat gcaactccaa gacatttcct
      541 agccgtgctc ctcaggtaag aacaaggcaa gaccaacccc tgctctcctg gagcttacat
      601 tctagtgggg gtgatgtcaa cagacagaca aacaaaccaa gaaaatagtt acagatttgt
      661 atccgtgttc tgagggaaac aaacacgact ttggatagaa aatactgggg gatctaggtg
      721 gtcaaggaag gtttctcaag gagaaaatga catttaagcc aaaacttgga ggagaggaga
      781 ctgtattcgt ttcctggggc tgccataaca cagtaccaca agccaggtgg tggaagtaac
      841 agaaacgcat tgcctcacag ttctggaagc tggaagtcca agatcaaggt gtccacagag
      901 ttggctcctt ctgagggtta tgggggaagg atctgttcct tgcctcctgg cttctggtgt
      961 tggccagcaa tcctgggcat tctttggctt gtagcagcat cactccatct ctcccttcat
     1021 cttcacgtgg tgttctccct ggatgtgtgt ctgtatccaa atttccccat tttataggga
     1081 cactagtctt attggattag gggcccacca tactccaata tgatctcatc ttaattcatt
     1141 acatctgcaa agacaatctg agatattggg ggattaggag ttcaatatat gaattttgag
     1201 ggggacacac ttcaacacgt aactgatatc catcgtgtga tgaagccccg agccagaggg
     1261 aagactgaac acaaaggcca tgaaaagcaa aagggtctgg catattctgg aaaccaaaag
     1321 aaggtgaatg tgacttaaga gttctgaatg aaggtaagaa ggacacaggc aggtgggcag
     1381 aggccagatc aaggactttg gattttattc caagatcaat gggaagattt tgaagggttc
     1441 tgtggtctta aaaggtcacg ctataaattt cccaactgtc tcctcaacat caatgaaatg
     1501 caaggatttc ttaatttgtg tatttctcag aagaatttgt aactgttctt gcactgacct
     1561 ctcagttcat tacatgatga atttgttgag gaaacaatgc attggggata ttttgaaaca
     1621 gtttaatctt ctttttcatt tctttttggc attcctaagg tatttctttc cctttaactt
     1681 tctgtctgat tttcatctcc acaaataaaa gaagtaaatt tttacttcat tctttttacc
     1741 ctatccccat aaaaacttcc cttaaaaaaa aagaagatat attcaactgt ggattccggg
     1801 cacatgctat tttcctgttt tgagtgaatg atgataattt tcagagattg tgtcaccaca
     1861 aaatcaacat tcattccaaa atttaatggt ttcaaatgta tttctttttt tgatttctaa
     1921 aaattttcaa atttcttttc catcagaaac cccttgtgtg taataaatag tttccacaaa
     1981 actgaatttt tgttggcaga acaatcggcg taagtaaaac ttcacgattt gccttgggtg
     2041 ttttgtaatt tgaaagcaaa tgttggttta aacagcccac catatatttt gtcaatgtcc
     2101 agctgtggat gctgggtttt tagcaccact tctttccgga caaccaaaaa aaatatcact
     2161 ttctttcctg ttttacatat tgaggttctg cgtaagattt catttgggga aaaggttctg
     2221 tcgctttaaa aaaaaaatgg aaaaaagcca ccaatactac tggaagttag ttttgcttca
     2281 ttttcctata accggagata agaaagaaaa cacgacaaac cataagtgaa gacccttaag
     2341 actgaaggag agaaagaaat atgcagaccc aggaacagac gcccgaggga gggttgatgg
     2401 gtgagttcac tctgggtggc tgggcggagc cagcctctgc gaaggggcca acattgtagg
     2461 ttcaccctca cttgagttgc tcaggttgtc tccatatttc cttgttttta tttcctacct
     2521 tgatgagaac ttttcatctt ttcagggatg cagaaccaac agattcatga caactcgttt
     2581 cacaattcat catatttcct attttacttg ctcaacttcc acatataaca ggattggcag
     2641 aagggagaga aaacaactca tttgaaggca gtaaagggta ggatgtctct gtctctgtct
     2701 ctctctctgt ctctgtctct ctctctcaca cacacacaca cacacacagt agaggaggat
     2761 tctctgcatg cagaaactca attcagaaca tttttcccac agaaataata agaaaccatg
     2821 atggtaaaag tatatagttt tccttcatta tgggttaaaa taggagtttg tgggctggcc
     2881 cgggaataca ccattttata acatcgtaca cgtgggaaac ttgcattctg aaatctagac
     2941 agctgttttc aaaagacact atgagggctc agtgcgttta tgtgggcctg cggctgccca
     3001 ccctctgcag gaccgtgctc agcagtttgg aggcgatgag gaagaaagag gcctgcttcc
     3061 tgatcttgag gcatttgcag tccacgttgg gagtcagggc ccacagtgca aagatgatta
     3121 tttcaaagta gaaatggcat gtggccccac tcccaggtaa cattttaata cattcattta
     3181 tctgttcatt cagcatctgt ttcttgactt tatagtaatt atctctctat ttttatagtc
     3241 taaatgatat tttctaatat aaataataca tgattataga agaatattag agcaatacag
     3301 acttctctgt agtgacaaaa tcagaaagaa cttgaatgtt gataactgaa tgattgaatc
     3361 aactggggtt gatccattct gtgggatgtt atgcaccaat aaaaaagaac aaattaagaa
     3421 tatctgttgt tctggacagg ggaccaggat gtattataaa gaatgaagat caagatggaa
     3481 agaaagtttc ctattttgat ctcctttttg caaagacaac agtggacacc cccaaaaaag
     3541 tttgaattcg aaaggataaa ggtgtagata tgaagctgtt aataatggtc accttaagga
     3601 cagttaagga tctggaaatg agatcattct ggaccatcct ggtgggcccc caatccaaag
     3661 acaagtgtcc ttataaaaga agagaagaag acacagccac agaggacaag tccacgtgag
     3721 cacaaaggcg agactacagt gatgcagctg caaaagccaa ggaatgctcg gaaccacggg
     3781 aaactggaag aggcgaggaa ggattctccc cagagccgtc ctgggccaag aactccggtc
     3841 gtatgtatgc tttgctgtaa atataatatt aataactact gattaaccac ctctaccttt
     3901 ctaagtacat aaaatcaaat aggtctaaga tctttaaccc tacaactgtc tacttcatgc
     3961 ccagattctg ggttggttag atttttatca cacctcatct caacctcgtg gtcttatgtg
     4021 gtcccataag ggatccaggg tgattcatcc ccctttttca agttgataat ttgccaatat
     4081 caggcaaatt cgtgactttg gtgtttctta catttttatg ctgattcaat gtcaggtaag
     4141 attaagagat tgggagaaca tggaatggtg tataaaggtt ggtttttgtt aattctggca
     4201 aaaggatcaa gtttgttttt
//
LOCUS       XR_004347826            4076 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X2, ncRNA.
ACCESSION   XR_004347826
VERSION     XR_004347826.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4076
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..4076
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X2"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaaggat ggacatccta ggaccgtcta cctggatgca tcagaactca tttcttttca
      361 agggagtcga gaaaggacag gttacttggc catgcagcaa ttgacctctc catgactgaa
      421 gcttaaagat acattcaaga aagtttcatc tccactacat ccaaaaggtg cacgacaatt
      481 cacacgtaca cctctcggcg ctgcctcctt ctcctgagat gcaactccaa gacatttcct
      541 agccgtgctc ctcaggtaag aacaaggcaa gaccaacccc tgctctcctg gagcttacat
      601 tctagtgggg gtgatgtcaa cagacagaca aacaaaccaa gaaaatagtt acagatttgt
      661 atccgtgttc tgagggaaac aaacacgact ttggatagaa aatactgggg gatctaggtg
      721 gtcaaggaag gtttctcaag gagaaaatga catttaagcc aaaacttgga ggagaggaga
      781 ctgtattcgt ttcctggggc tgccataaca cagtaccaca agccaggtgg tggaagtaac
      841 agaaacgcat tgcctcacag ttctggaagc tggaagtcca agatcaaggt gtccacagag
      901 ttggctcctt ctgagggtta tgggggaagg atctgttcct tgcctcctgg cttctggtgt
      961 tggccagcaa tcctgggcat tctttggctt gtagcagcat cactccatct ctcccttcat
     1021 cttcacgtgg tgttctccct ggatgtgtgt ctgtatccaa atttccccat tttataggga
     1081 cactagtctt attggattag gggcccacca tactccaata tgatctcatc ttaattcatt
     1141 acatctgcaa agacaatctg agatattggg ggattaggag ttcaatatat gaattttgag
     1201 ggggacacac ttcaacacgt aactgatatc catcgtgtga tgaagccccg agccagaggg
     1261 aagactgaac acaaaggcca tgaaaagcaa aagggtctgg catattctgg aaaccaaaag
     1321 aaggtgaatg tgacttaaga gttctgaatg aaggtaagaa ggacacaggc aggtgggcag
     1381 aggccagatc aaggactttg gattttattc caagatcaat gggaagattt tgaagggttc
     1441 tgtggtctta aaaggtcacg ctataaattt cccaactgtc tcctcaacat caatgaaatg
     1501 caaggatttc ttaatttgtg tatttctcag aagaatttgt aactgttctt gcactgacct
     1561 ctcagttcat tacatgatga atttgttgag gaaacaatgc attggggata ttttgaaaca
     1621 gtttaatctt ctttttcatt tctttttggc attcctaagg tatttctttc cctttaactt
     1681 tctgtctgat tttcatctcc acaaataaaa gaagtaaatt tttacttcat tctttttacc
     1741 ctatccccat aaaaacttcc cttaaaaaaa aagaagatat attcaactgt ggattccggg
     1801 cacatgctat tttcctgttt tgagtgaatg atgataattt tcagagattg tgtcaccaca
     1861 aaatcaacat tcattccaaa atttaatggt ttcaaatgta tttctttttt tgatttctaa
     1921 aaattttcaa atttcttttc catcagaaac cccttgtgtg taataaatag tttccacaaa
     1981 actgaatttt tgttggcaga acaatcggcg taagtaaaac ttcacgattt gccttgggtg
     2041 ttttgtaatt tgaaagcaaa tgttggttta aacagcccac catatatttt gtcaatgtcc
     2101 agctgtggat gctgggtttt tagcaccact tctttccgga caaccaaaaa aaatatcact
     2161 ttctttcctg ttttacatat tgaggttctg cgtaagattt catttgggga aaaggttctg
     2221 tcgctttaaa aaaaaaatgg aaaaaagcca ccaatactac tggaagttag ttttgcttca
     2281 ttttcctata accggagata agaaagaaaa cacgacaaac cataagtgaa gacccttaag
     2341 actgaaggag agaaagaaat atgcagaccc aggaacagac gcccgaggga gggttgatgg
     2401 ggatgcagaa ccaacagatt catgacaact cgtttcacaa ttcatcatat ttcctatttt
     2461 acttgctcaa cttccacata taacaggatt ggcagaaggg agagaaaaca actcatttga
     2521 aggcagtaaa gggtaggatg tctctgtctc tgtctctctc tctgtctctg tctctctctc
     2581 tcacacacac acacacacac acagtagagg aggattctct gcatgcagaa actcaattca
     2641 gaacattttt cccacagaaa taataagaaa ccatgatggt aaaagtatat agttttcctt
     2701 cattatgggt taaaatagga gtttgtgggc tggcccggga atacaccatt ttataacatc
     2761 gtacacgtgg gaaacttgca ttctgaaatc tagacagctg ttttcaaaag acactatgag
     2821 ggctcagtgc gtttatgtgg gcctgcggct gcccaccctc tgcaggaccg tgctcagcag
     2881 tttggaggcg atgaggaaga aagaggcctg cttcctgatc ttgaggcatt tgcagtccac
     2941 gttgggagtc agggcccaca gtgcaaagat gattatttca aagtagaaat ggcatgtggc
     3001 cccactccca ggtaacattt taatacattc atttatctgt tcattcagca tctgtttctt
     3061 gactttatag taattatctc tctattttta tagtctaaat gatattttct aatataaata
     3121 atacatgatt atagaagaat attagagcaa tacagacttc tctgtagtga caaaatcaga
     3181 aagaacttga atgttgataa ctgaatgatt gaatcaactg gggttgatcc attctgtggg
     3241 atgttatgca ccaataaaaa agaacaaatt aagaatatct gttgttctgg acaggggacc
     3301 aggatgtatt ataaagaatg aagatcaaga tggaaagaaa gtttcctatt ttgatctcct
     3361 ttttgcaaag acaacagtgg acacccccaa aaaagtttga attcgaaagg ataaaggtgt
     3421 agatatgaag ctgttaataa tggtcacctt aaggacagtt aaggatctgg aaatgagatc
     3481 attctggacc atcctggtgg gcccccaatc caaagacaag tgtccttata aaagaagaga
     3541 agaagacaca gccacagagg acaagtccac gtgagcacaa aggcgagact acagtgatgc
     3601 agctgcaaaa gccaaggaat gctcggaacc acgggaaact ggaagaggcg aggaaggatt
     3661 ctccccagag ccgtcctggg ccaagaactc cggtcgtatg tatgctttgc tgtaaatata
     3721 atattaataa ctactgatta accacctcta cctttctaag tacataaaat caaataggtc
     3781 taagatcttt aaccctacaa ctgtctactt catgcccaga ttctgggttg gttagatttt
     3841 tatcacacct catctcaacc tcgtggtctt atgtggtccc ataagggatc cagggtgatt
     3901 catccccctt tttcaagttg ataatttgcc aatatcaggc aaattcgtga ctttggtgtt
     3961 tcttacattt ttatgctgat tcaatgtcag gtaagattaa gagattggga gaacatggaa
     4021 tggtgtataa aggttggttt ttgttaattc tggcaaaagg atcaagtttg tttttt
//
LOCUS       XR_004347827            3936 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X3, ncRNA.
ACCESSION   XR_004347827
VERSION     XR_004347827.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3936
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3936
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..3936
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X3"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaaggat ggacatccta ggaccgtcta cctggatgca tcagaactca tttcttttca
      361 agggagtcga gaaaggacag gttacttggc catgcagcaa ttgacctctc catgactgaa
      421 gcttaaagat acattcaaga aagtttcatc tccactacat ccaaaaggtg cacgacaatt
      481 cacacgtaca cctctcggcg ctgcctcctt ctcctgagat gcaactccaa gacatttcct
      541 agccgtgctc ctcaggtaag aacaaggcaa gaccaacccc tgctctcctg gagcttacat
      601 tctagtgggg gtgatgtcaa cagacagaca aacaaaccaa gaaaatagtt acagatttgt
      661 atccgtgttc tgagggaaac aaacacgact ttggatagaa aatactgggg gatctaggtg
      721 gtcaaggaag gtttctcaag gagaaaatga catttaagcc aaaacttgga ggagaggaga
      781 ctgtattcgt ttcctggggc tgccataaca cagtaccaca agccaggtgg tggaagtaac
      841 agaaacgcat tgcctcacag ttctggaagc tggaagtcca agatcaaggt gtccacagag
      901 ttggctcctt ctgagggtta tgggggaagg atctgttcct tgcctcctgg cttctggtgt
      961 tggccagcaa tcctgggcat tctttggctt gtagcagcat cactccatct ctcccttcat
     1021 cttcacgtgg tgttctccct ggatgtgtgt ctgtatccaa atttccccat tttataggga
     1081 cactagtctt attggattag gggcccacca tactccaata tgatctcatc ttaattcatt
     1141 acatctgcaa agacaatctg agatattggg ggattaggag ttcaatatat gaattttgag
     1201 ggggacacac ttcaacacgt aactgatatc catcgtgtga tgaagccccg agccagaggg
     1261 aagactgaac acaaaggcca tgaaaagcaa aagggtctgg catattctgg aaaccaaaag
     1321 aaggtgaatg tgacttaaga gttctgaatg aaggtaagaa ggacacaggc aggtgggcag
     1381 aggccagatc aaggactttg gattttattc caagatcaat gggaagattt tgaagggttc
     1441 tgtggtctta aaaggtcacg ctataaattt cccaactgtc tcctcaacat caatgaaatg
     1501 caaggatttc ttaatttgtg tatttctcag aagaatttgt aactgttctt gcactgacct
     1561 ctcagttcat tacatgatga atttgttgag gaaacaatgc attggggata ttttgaaaca
     1621 gtttaatctt ctttttcatt tctttttggc attcctaagg tatttctttc cctttaactt
     1681 tctgtctgat tttcatctcc acaaataaaa gaagtaaatt tttacttcat tctttttacc
     1741 ctatccccat aaaaacttcc cttaaaaaaa aagaagatat attcaactgt ggattccggg
     1801 cacatgctat tttcctgttt tgagtgaatg atgataattt tcagagattg tgtcaccaca
     1861 aaatcaacat tcattccaaa atttaatggt ttcaaatgta tttctttttt tgatttctaa
     1921 aaattttcaa atttcttttc catcagaaac cccttgtgtg taataaatag tttccacaaa
     1981 actgaatttt tgttggcaga acaatcggcg taagtaaaac ttcacgattt gccttgggtg
     2041 ttttgtaatt tgaaagcaaa tgttggttta aacagcccac catatatttt gtcaatgtcc
     2101 agctgtggat gctgggtttt tagcaccact tctttccgga caaccaaaaa aaatatcact
     2161 ttctttcctg ttttacatat tgaggttctg cgtaagattt catttgggga aaaggttctg
     2221 tcgctttaaa aaaaaaatgg aaaaaagcca ccaatactac tggaagttag ttttgcttca
     2281 ttttcctata accggagata agaaagaaaa cacgacaaac cataagtgaa gacccttaag
     2341 actgaaggag agaaagaaat atgcagaccc aggaacagac gcccgaggga gggttgatgg
     2401 gtgagttcac tctgggtggc tgggcggagc cagcctctgc gaaggggcca acattgtagg
     2461 ttcaccctca cttgagttgc tcaggttgtc tccatatttc cttgttttta tttcctacct
     2521 tgatgagaac ttttcatctt ttcagggatg cagaaccaac agattcatga caactcgttt
     2581 cacaattcat catatttcct attttacttg ctcaacttcc acatataaca ggattggcag
     2641 aagggagaga aaacaactca tttgaaggca gtaaagggta ggatgtctct gtctctgtct
     2701 ctctctctgt ctctgtctct ctctctcaca cacacacaca cacacacagt agaggaggat
     2761 tctctgcatg cagaaactca attcagaaca tttttcccac agaaataata agaaaccatg
     2821 atggtaaaag tatatagttt tccttcatta tgggttaaaa taggagtttg tgggctggcc
     2881 cgggaataca ccattttata acatcgtaca cgtgggaaac ttgcattctg aaatctagac
     2941 agctgttttc aaaagacact atgagggctc agtgcgttta tgtgggcctg cggctgccca
     3001 ccctctgcag gaccgtgctc agcagtttgg aggcgatgag gaagaaagag gcctgcttcc
     3061 tgatcttgag gcatttgcag tccacgttgg gagtcagggc ccacagtgca aagatgatta
     3121 tttcaaagta gaaatggcat gtggccccac tcccagggga ccaggatgta ttataaagaa
     3181 tgaagatcaa gatggaaaga aagtttccta ttttgatctc ctttttgcaa agacaacagt
     3241 ggacaccccc aaaaaagttt gaattcgaaa ggataaaggt gtagatatga agctgttaat
     3301 aatggtcacc ttaaggacag ttaaggatct ggaaatgaga tcattctgga ccatcctggt
     3361 gggcccccaa tccaaagaca agtgtcctta taaaagaaga gaagaagaca cagccacaga
     3421 ggacaagtcc acgtgagcac aaaggcgaga ctacagtgat gcagctgcaa aagccaagga
     3481 atgctcggaa ccacgggaaa ctggaagagg cgaggaagga ttctccccag agccgtcctg
     3541 ggccaagaac tccggtcgta tgtatgcttt gctgtaaata taatattaat aactactgat
     3601 taaccacctc tacctttcta agtacataaa atcaaatagg tctaagatct ttaaccctac
     3661 aactgtctac ttcatgccca gattctgggt tggttagatt tttatcacac ctcatctcaa
     3721 cctcgtggtc ttatgtggtc ccataaggga tccagggtga ttcatccccc tttttcaagt
     3781 tgataatttg ccaatatcag gcaaattcgt gactttggtg tttcttacat ttttatgctg
     3841 attcaatgtc aggtaagatt aagagattgg gagaacatgg aatggtgtat aaaggttggt
     3901 ttttgttaat tctggcaaaa ggatcaagtt tgtttt
//
LOCUS       XR_004347828            4394 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X4, ncRNA.
ACCESSION   XR_004347828
VERSION     XR_004347828.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4394
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4394
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..4394
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X4"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaagtag ctgagcgtgt aaccatttga agggcagctg tcatcaggga caccgcctgg
      361 agctccgtct gggggcgaaa aggaaggcct tcccctagta agtcaccagc agtgtcctcc
      421 cagactgagt gtgcaacaga agttccctcc ctgaaggatg agatgggcaa gggatggaca
      481 tcctaggacc gtctacctgg atgcatcaga actcatttct tttcaaggga gtcgagaaag
      541 gacaggttac ttggccatgc agcaattgac ctctccatga ctgaagctta aagatacatt
      601 caagaaagtt tcatctccac tacatccaaa aggtgcacga caattcacac gtacacctct
      661 cggcgctgcc tccttctcct gagatgcaac tccaagacat ttcctagccg tgctcctcag
      721 gtaagaacaa ggcaagacca acccctgctc tcctggagct tacattctag tgggggtgat
      781 gtcaacagac agacaaacaa accaagaaaa tagttacaga tttgtatccg tgttctgagg
      841 gaaacaaaca cgactttgga tagaaaatac tgggggatct aggtggtcaa ggaaggtttc
      901 tcaaggagaa aatgacattt aagccaaaac ttggaggaga ggagactgta ttcgtttcct
      961 ggggctgcca taacacagta ccacaagcca ggtggtggaa gtaacagaaa cgcattgcct
     1021 cacagttctg gaagctggaa gtccaagatc aaggtgtcca cagagttggc tccttctgag
     1081 ggttatgggg gaaggatctg ttccttgcct cctggcttct ggtgttggcc agcaatcctg
     1141 ggcattcttt ggcttgtagc agcatcactc catctctccc ttcatcttca cgtggtgttc
     1201 tccctggatg tgtgtctgta tccaaatttc cccattttat agggacacta gtcttattgg
     1261 attaggggcc caccatactc caatatgatc tcatcttaat tcattacatc tgcaaagaca
     1321 atctgagata ttgggggatt aggagttcaa tatatgaatt ttgaggggga cacacttcaa
     1381 cacgtaactg atatccatcg tgtgatgaag ccccgagcca gagggaagac tgaacacaaa
     1441 ggccatgaaa agcaaaaggg tctggcatat tctggaaacc aaaagaaggt gaatgtgact
     1501 taagagttct gaatgaaggt aagaaggaca caggcaggtg ggcagaggcc agatcaagga
     1561 ctttggattt tattccaaga tcaatgggaa gattttgaag ggttctgtgg tcttaaaagg
     1621 tcacgctata aatttcccaa ctgtctcctc aacatcaatg aaatgcaagg atttcttaat
     1681 ttgtgtattt ctcagaagaa tttgtaactg ttcttgcact gacctctcag ttcattacat
     1741 gatgaatttg ttgaggaaac aatgcattgg ggatattttg aaacagttta atcttctttt
     1801 tcatttcttt ttggcattcc taaggtattt ctttcccttt aactttctgt ctgattttca
     1861 tctccacaaa taaaagaagt aaatttttac ttcattcttt ttaccctatc cccataaaaa
     1921 cttcccttaa aaaaaaagaa gatatattca actgtggatt ccgggcacat gctattttcc
     1981 tgttttgagt gaatgatgat aattttcaga gattgtgtca ccacaaaatc aacattcatt
     2041 ccaaaattta atggtttcaa atgtatttct ttttttgatt tctaaaaatt ttcaaatttc
     2101 ttttccatca gaaacccctt gtgtgtaata aatagtttcc acaaaactga atttttgttg
     2161 gcagaacaat cggcgtaagt aaaacttcac gatttgcctt gggtgttttg taatttgaaa
     2221 gcaaatgttg gtttaaacag cccaccatat attttgtcaa tgtccagctg tggatgctgg
     2281 gtttttagca ccacttcttt ccggacaacc aaaaaaaata tcactttctt tcctgtttta
     2341 catattgagg ttctgcgtaa gatttcattt ggggaaaagg ttctgtcgct ttaaaaaaaa
     2401 aatggaaaaa agccaccaat actactggaa gttagttttg cttcattttc ctataaccgg
     2461 agataagaaa gaaaacacga caaaccataa gtgaagaccc ttaagactga aggagagaaa
     2521 gaaatatgca gacccaggaa cagacgcccg agggagggtt gatgggtgag ttcactctgg
     2581 gtggctgggc ggagccagcc tctgcgaagg ggccaacatt gtaggttcac cctcacttga
     2641 gttgctcagg ttgtctccat atttccttgt ttttatttcc taccttgatg agaacttttc
     2701 atcttttcag ggatgcagaa ccaacagatt catgacaact cgtttcacaa ttcatcatat
     2761 ttcctatttt acttgctcaa cttccacata taacaggatt ggcagaaggg agagaaaaca
     2821 actcatttga aggcagtaaa gggtaggatg tctctgtctc tgtctctctc tctgtctctg
     2881 tctctctctc tcacacacac acacacacac acagtagagg aggattctct gcatgcagaa
     2941 actcaattca gaacattttt cccacagaaa taataagaaa ccatgatggt aaaagtatat
     3001 agttttcctt cattatgggt taaaatagga gtttgtgggc tggcccggga atacaccatt
     3061 ttataacatc gtacacgtgg gaaacttgca ttctgaaatc tagacagctg ttttcaaaag
     3121 acactatgag ggctcagtgc gtttatgtgg gcctgcggct gcccaccctc tgcaggaccg
     3181 tgctcagcag tttggaggcg atgaggaaga aagaggcctg cttcctgatc ttgaggcatt
     3241 tgcagtccac gttgggagtc agggcccaca gtgcaaagat gattatttca aagtagaaat
     3301 ggcatgtggc cccactccca ggtaacattt taatacattc atttatctgt tcattcagca
     3361 tctgtttctt gactttatag taattatctc tctattttta tagtctaaat gatattttct
     3421 aatataaata atacatgatt atagaagaat attagagcaa tacagacttc tctgtagtga
     3481 caaaatcaga aagaacttga atgttgataa ctgaatgatt gaatcaactg gggttgatcc
     3541 attctgtggg atgttatgca ccaataaaaa agaacaaatt aagaatatct gttgttctgg
     3601 acaggggacc aggatgtatt ataaagaatg aagatcaaga tggaaagaaa gtttcctatt
     3661 ttgatctcct ttttgcaaag acaacagtgg acacccccaa aaaagtttga attcgaaagg
     3721 ataaaggtgt agatatgaag ctgttaataa tggtcacctt aaggacagtt aaggatctgg
     3781 aaatgagatc attctggacc atcctggtgg gcccccaatc caaagacaag tgtccttata
     3841 aaagaagaga agaagacaca gccacagagg acaagtccac gtgagcacaa aggcgagact
     3901 acagtgatgc agctgcaaaa gccaaggaat gctcggaacc acgggaaact ggaagaggcg
     3961 aggaaggatt ctccccagag ccgtcctggg ccaagaactc cggtcgtatg tatgctttgc
     4021 tgtaaatata atattaataa ctactgatta accacctcta cctttctaag tacataaaat
     4081 caaataggtc taagatcttt aaccctacaa ctgtctactt catgcccaga ttctgggttg
     4141 gttagatttt tatcacacct catctcaacc tcgtggtctt atgtggtccc ataagggatc
     4201 cagggtgatt catccccctt tttcaagttg ataatttgcc aatatcaggc aaattcgtga
     4261 ctttggtgtt tcttacattt ttatgctgat tcaatgtcag gtaagattaa gagattggga
     4321 gaacatggaa tggtgtataa aggttggttt ttgttaattc tggcaaaagg atcaagtttg
     4381 tttttttctc tcgg
//
LOCUS       XR_004347829            4744 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X5, ncRNA.
ACCESSION   XR_004347829
VERSION     XR_004347829.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4744
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4744
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..4744
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X5"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaaggat ggacatccta ggaccgtcta cctggatgca tcagaactca tttcttttca
      361 agggagtcga gaaaggacag gttacttggc catgcagcaa ttgacctctc catgactgaa
      421 gcttaaagat acattcaaga aagtttcatc tccactacat ccaaaaggtg cacgacaatt
      481 cacacgtaca cctctcggcg ctgcctcctt ctcctgagat gcaactccaa gacatttcct
      541 agccgtgctc ctcagaaacc ccttgtgtgt aataaatagt ttccacaaaa ctgaattttt
      601 gttggcagaa caatcggcgt aagtaaaact tcacgatttg ccttgggtgt tttgtaattt
      661 gaaagcaaat gttggtttaa acagcccacc atatattttg tcaatgtcca gctgtggatg
      721 ctgggttttt agcaccactt ctttccggac aaccaaaaaa aatatcactt tctttcctgt
      781 tttacatatt gaggttctgc gtaagatttc atttggggaa aaggttctgt cgctttaaaa
      841 aaaaaatgga aaaaagccac caatactact ggaagttagt tttgcttcat tttcctataa
      901 ccggagataa gaaagaaaac acgacaaacc ataagtgaag acccttaaga ctgaaggaga
      961 gaaagaaata tgcagaccca ggaacagacg cccgagggag ggttgatggg tgagttcact
     1021 ctgggtggct gggcggagcc agcctctgcg aaggggccaa cattgtaggt tcaccctcac
     1081 ttgagttgct caggttgtct ccatatttcc ttgtttttat ttcctacctt gatgagaact
     1141 tttcatcttt tcagggatgc agaaccaaca gattcatgac aactcgtttc acaattcatc
     1201 atatttccta ttttacttgc tcaacttcca catataacag gattggcaga agggagagaa
     1261 aacaactcat ttgaaggcag taaagggtag gatgtctctg tctctgtctc tctctctgtc
     1321 tctgtctctc tctctcacac acacacacac acacacagta gaggaggatt ctctgcatgc
     1381 agaaactcaa ttcagaacat ttttcccaca gaaataataa gaaaccatga tggtaaaagt
     1441 atatagtttt ccttcattat gggttaaaat aggagtttgt gggctggccc gggaatacac
     1501 cattttataa catcgtacac gtgggaaact tgcattctga aatctagaca gctgttttca
     1561 aaagacacta tgagggctca gtgcgtttat gtgggcctgc ggctgcccac cctctgcagg
     1621 accgtgctca gcagtttgga ggcgatgagg aagaaagagg cctgcttcct gatcttgagg
     1681 catttgcagt ccacgttggg agtcagggcc cacagtgcaa agatgattat ttcaaagtag
     1741 aaatggcatg tggccccact cccaggtaac attttaatac attcatttat ctgttcattc
     1801 agcatctgtt tcttgacttt atagtaatta tctctctatt tttatagtct aaatgatatt
     1861 ttctaatata aataatacat gattatagaa gaatattaga gcaatacaga cttctctgta
     1921 gtgacaaaat cagaaagaac ttgaatgttg ataactgaat gattgaatca actggggttg
     1981 atccattctg tgggatgtta tgcaccaata aaaaagaaca aattaagaat atctgttgtt
     2041 ctggacaggg gaccaggatg tattataaag aatgaagatc aagatggaaa gaaagtttcc
     2101 tattttgatc tcctttttgc aaagacaaca gtggacaccc ccaaaaaagt ttgaattcga
     2161 aaggataaag gtgtagatat gaagctgtta ataatggtca ccttaaggac agttaaggat
     2221 ctggaaatga gatcattctg gaccatcctg gtgggccccc aatccaaaga caagtgtcct
     2281 tataaaagaa gagaagaaga cacagccaca gaggacaagt ccacgtgagc acaaaggcga
     2341 gactacagtg atgcagctgc aaaagccaag gaatgctcgg aaccacggga aactggaaga
     2401 ggcgaggaag gattctcccc agagccgtcc tgggccaaga actccggtcg tatgtatgct
     2461 ttgctgtaaa tataatatta ataactactg attaaccacc tctacctttc taagtacata
     2521 aaatcaaata ggtctaagat ctttaaccct acaactgtct acttcatgcc cagattctgg
     2581 gttggttaga tttttatcac acctcatctc aacctcgtgg tcttatgtgg tcccataagg
     2641 gatccagggt gattcatccc cctttttcaa gttgataatt tgccaatatc aggcaaattc
     2701 gtgactttgg tgtttcttac atttttatgc tgattcaatg tcaggtaaga ttaagagatt
     2761 gggagaacat ggaatggtgt ataaaggttg gtttttgtta attctggcaa aaggatcaag
     2821 tttgtttttt tctctcggta cttaaggata atttttaaaa accttttcaa tatactaatt
     2881 cttttttcca gttttattga gaaataattg acatacatca ttatataaat ttaaggcata
     2941 cagcatgatg gtttgattta catattaata cttttaatga ggacaactaa atagattaaa
     3001 actaaatgta ttttcagagc accaataagg ccagtgatct cgataaacct taatcagtag
     3061 aaaattttag ctattccatg tggctcaaca aaaatatgaa tacacacaca cacacacaca
     3121 cacacacata tatacacata acctatcaca gagtcattaa caaaacttaa gtgtgtgtcc
     3181 actcactttt catgatatta tctgacttat ttttagtaga atgactcatt tttctgagag
     3241 ttgtgagaga tttggaccaa acccatattc cagccttttt atcaccaaag aaggaaggaa
     3301 agtgtaggga acgtacattt actgagaaca tgctatgtag caggtgctct gcttaaacac
     3361 ctatcccccc agtaggccac tccctgtgag gttggggatc tagttcccat tccaggattt
     3421 tgtcatctct tcctggtctg atggggaagg ctcctaaaaa ttactggtat ctctgcttct
     3481 acttttgtct cctggcggtc cactctagac tcagatgcac cagagtgtta ttaaaatata
     3541 tcacgtcaca ctcctgccta aagcccctca ggcattcccc agagcaatta gaataaaatc
     3601 ctctctcgct tccatggcct acaaaacccc tgcatggggt ctggcctgcg cccacctcgt
     3661 tctctctcac gccgtctggg actaatcttt ctcccactcg ctccccatgc tttagccctg
     3721 gggtcagcaa atgacagcac acgggcaaaa cccagccgac tgcctgtttt catacagctc
     3781 ctgagctgag aatggttttt acatttttaa atggttggga aaaaaatcaa aagaagaaca
     3841 ctatattgtg acatgtgaaa atgataggca attcaattaa gtgtccacaa atacggtttt
     3901 attggaacag agccatgctc atccgtgtat gtattgtcca gggcagcttc tgtgctacaa
     3961 tagcagagta gctgcaacca agactgactg gcctaaaagc ttaaaatatt tactagttgg
     4021 ccctttgcaa gaaaagtttg ctgaaccccg ctttcgtcac actggtctcc ttcccgtttc
     4081 taaaactcac cctgttcatt ctctcctcag ggctttctag ttcctgttct ctcttcctag
     4141 aatgttcttc tccagctctt tgcatggctg ctttgttcca tgaggtctca cttaacatgg
     4201 gcaaacccag cagaaggtca tacactatca gaccgcatct cttacctaca agaggatccc
     4261 tggctagaga gggtggattg aagcttcctt ctttcctttc tggcagcagc gaggaaagga
     4321 gaagctttct ggaggccagg ctccgaagtg cactgagctg gtgatccctc ctgcagtcgg
     4381 tgtgaatgga tgctcctaac ctgcaaagta gagcctacgg agctgcagga agggatggtg
     4441 atgagctcca tctcccaggc tccagggaac agaggagcct tcagagaccc tccccggccc
     4501 tgtcagacga tagccaacga agcgttgggc actgcccaga actcttggcg tactgtgtaa
     4561 agaggggaag gagggtgagg tgttctttca tcacagtgcc ctggtccaca ggagaagtca
     4621 gtcaccctgt ggataaaaag gaacctaggg gcaggacagg aataaagacg cagacgtaca
     4681 gaatggactt gaggacacgg ggagggggaa gggtcagctg ggacaaagtg agagagtggc
     4741 atgg
//
LOCUS       XR_004347830            4275 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X6, ncRNA.
ACCESSION   XR_004347830
VERSION     XR_004347830.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4275
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4275
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..4275
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X6"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaaggat ggacatccta ggaccgtcta cctggatgca tcagaactca tttcttttca
      361 agggagtcga gaaaggacag gttacttggc catgcagcaa ttgacctctc catgactgaa
      421 gcttaaagat acattcaaga aagtttcatc tccactacat ccaaaaggtg cacgacaatt
      481 cacacgtaca cctctcggcg ctgcctcctt ctcctgagat gcaactccaa gacatttcct
      541 agccgtgctc ctcaggtaag aacaaggcaa gaccaacccc tgctctcctg gagcttacat
      601 tctagtgggg gtgatgtcaa cagacagaca aacaaaccaa gaaaatagtt acagatttgt
      661 atccgtgttc tgagggaaac aaacacgact ttggatagaa aatactgggg gatctaggtg
      721 gtcaaggaag gtttctcaag gagaaaatga catttaagcc aaaacttgga ggagaggaga
      781 ctgtattcgt ttcctggggc tgccataaca cagtaccaca agccaggtgg tggaagtaac
      841 agaaacgcat tgcctcacag ttctggaagc tggaagtcca agatcaaggt gtccacagag
      901 ttggctcctt ctgagggtta tgggggaagg atctgttcct tgcctcctgg cttctggtgt
      961 tggccagcaa tcctgggcat tctttggctt gtagcagcat cactccatct ctcccttcat
     1021 cttcacgtgg tgttctccct ggatgtgtgt ctgtatccaa atttccccat tttataggga
     1081 cactagtctt attggattag gggcccacca tactccaata tgatctcatc ttaattcatt
     1141 acatctgcaa agacaatctg agatattggg ggattaggag ttcaatatat gaattttgag
     1201 ggggacacac ttcaacacgt aactgatatc catcgtgtga tgaagccccg agccagaggg
     1261 aagactgaac acaaaggcca tgaaaagcaa aagggtctgg catattctgg aaaccaaaag
     1321 aaggtgaatg tgacttaaga gttctgaatg aaggtaagaa ggacacaggc aggtgggcag
     1381 aggccagatc aaggactttg gattttattc caagatcaat gggaagattt tgaagggttc
     1441 tgtggtctta aaaggtcacg ctataaattt cccaactgtc tcctcaacat caatgaaatg
     1501 caaggatttc ttaatttgtg tatttctcag aagaatttgt aactgttctt gcactgacct
     1561 ctcagttcat tacatgatga atttgttgag gaaacaatgc attggggata ttttgaaaca
     1621 gtttaatctt ctttttcatt tctttttggc attcctaagg tatttctttc cctttaactt
     1681 tctgtctgat tttcatctcc acaaataaaa gaagtaaatt tttacttcat tctttttacc
     1741 ctatccccat aaaaacttcc cttaaaaaaa aagaagatat attcaactgt ggattccggg
     1801 cacatgctat tttcctgttt tgagtgaatg atgataattt tcagagattg tgtcaccaca
     1861 aaatcaacat tcattccaaa atttaatggt ttcaaatgta tttctttttt tgatttctaa
     1921 aaattttcaa atttcttttc catcagaaac cccttgtgtg taataaatag tttccacaaa
     1981 actgaatttt tgttggcaga acaatcggcg taagtaaaac ttcacgattt gccttgggtg
     2041 ttttgtaatt tgaaagcaaa tgttggttta aacagcccac catatatttt gtcaatgtcc
     2101 agctgtggat gctgggtttt tagcaccact tctttccgga caaccaaaaa aaatatcact
     2161 ttctttcctg ttttacatat tgaggttctg cgtaagattt catttgggga aaaggttctg
     2221 tcgctttaaa aaaaaaatgg aaaaaagcca ccaatactac tggaagttag ttttgcttca
     2281 ttttcctata accggagata agaaagaaaa cacgacaaac cataagtgaa gacccttaag
     2341 actgaaggag agaaagaaat atgcagaccc aggaacagac gcccgaggga gggttgatgg
     2401 gtgagttcac tctgggtggc tgggcggagc cagcctctgc gaaggggcca acattgtagg
     2461 ttcaccctca cttgagttgc tcaggttgtc tccatatttc cttgttttta tttcctacct
     2521 tgatgagaac ttttcatctt ttcagggatg cagaaccaac agattcatga caactcgttt
     2581 cacaattcat catatttcct attttacttg ctcaacttcc acatataaca ggattggcag
     2641 aagggagaga aaacaactca tttgaaggca gtaaagggta ggatgtctct gtctctgtct
     2701 ctctctctgt ctctgtctct ctctctcaca cacacacaca cacacacagt agaggaggat
     2761 tctctgcatg cagaaactca attcagaaca tttttcccac agaaataata agaaaccatg
     2821 atggtaaaag tatatagttt tccttcatta tgggttaaaa taggagtttg tgggctggcc
     2881 cgggaataca ccattttata acatcgtaca cgtgggaaac ttgcattctg aaatctagac
     2941 agctgttttc aaaagacact atgagggctc agtgcgttta tgtgggcctg cggctgccca
     3001 ccctctgcag gaccgtgctc agcagtttgg aggcgatgag gaagaaagag gcctgcttcc
     3061 tgatcttgag gcatttgcag tccacgttgg gagtcagggc ccacagtgca aagatgatta
     3121 tttcaaagta gaaatggcat gtggccccac tcccaggtaa cattttaata cattcattta
     3181 tctgttcatt cagcatctgt ttcttgactt tatagtaatt atctctctat ttttatagtc
     3241 taaatgatat tttctaatat aaataataca tgattataga agaatattag agcaatacag
     3301 acttctctgt agtgacaaaa tcagaaagaa cttgaatgtt gataactgaa tgattgaatc
     3361 aactggggtt gatccattct gtgggatgtt atgcaccaat aaaaaagaac aaattaagaa
     3421 tatctgttgt tctggacagg ggaccaggat gtattataaa gaatgaagat caagatggaa
     3481 agaaagtttc ctattttgat ctcctttttg caaagacaac agtggacacc cccaaaaaag
     3541 tttgaattcg aaaggataaa ggtgtagata tgaagctgtt aataatggtc accttaagga
     3601 cagttaagga tctggaaatg agatcattct ggaccatcct ggtgggcccc caatccaaag
     3661 acaagtgtcc ttataaaaga agagaagaag acacagccac agaggacaag tccacgtgag
     3721 cacaaaggcg agactacagt gatgcagctg caaaagccaa ggaatgctcg gaaccacggg
     3781 aaactggaag aggcgaggaa ggattctccc cagagccgtc ctgggccaag aactccggtc
     3841 cgaggaaagg agaagctttc tggaggccag gctccgaagt gcactgagct ggtgatccct
     3901 cctgcagtcg gtgtgaatgg atgctcctaa cctgcaaagt agagcctacg gagctgcagg
     3961 aagggatggt gatgagctcc atctcccagg ctccagggaa cagaggagcc ttcagagacc
     4021 ctccccggcc ctgtcagacg atagccaacg aagcgttggg cactgcccag aactcttggc
     4081 gtactgtgta aagaggggaa ggagggtgag gtgttctttc atcacagtgc cctggtccac
     4141 aggagaagtc agtcaccctg tggataaaaa ggaacctagg ggcaggacag gaataaagac
     4201 gcagacgtac agaatggact tgaggacacg gggaggggga agggtcagct gggacaaagt
     4261 gagagagtgg catgg
//
LOCUS       XR_004347831            4355 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X7, ncRNA.
ACCESSION   XR_004347831
VERSION     XR_004347831.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4355
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4355
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..4355
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X7"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagt agctgagcgt gtaaccattt gaagggcagc
      301 tgtcatcagg gacaccgcct ggagctccgt ctgggggcga aaaggaaggc cttcccctag
      361 taagtcacca gcagtgtcct cccagactga gtgtgcaaca gaagttccct ccctgaagga
      421 tgagatgggc aagggatgga catcctagga ccgtctacct ggatgcatca gaactcattt
      481 cttttcaagg gagtcgagaa aggacaggtt acttggccat gcagcaattg acctctccat
      541 gactgaagct taaagataca ttcaagaaag tttcatctcc actacatcca aaaggtgcac
      601 gacaattcac acgtacacct ctcggcgctg cctccttctc ctgagatgca actccaagac
      661 atttcctagc cgtgctcctc aggtaagaac aaggcaagac caacccctgc tctcctggag
      721 cttacattct agtgggggtg atgtcaacag acagacaaac aaaccaagaa aatagttaca
      781 gatttgtatc cgtgttctga gggaaacaaa cacgactttg gatagaaaat actgggggat
      841 ctaggtggtc aaggaaggtt tctcaaggag aaaatgacat ttaagccaaa acttggagga
      901 gaggagactg tattcgtttc ctggggctgc cataacacag taccacaagc caggtggtgg
      961 aagtaacaga aacgcattgc ctcacagttc tggaagctgg aagtccaaga tcaaggtgtc
     1021 cacagagttg gctccttctg agggttatgg gggaaggatc tgttccttgc ctcctggctt
     1081 ctggtgttgg ccagcaatcc tgggcattct ttggcttgta gcagcatcac tccatctctc
     1141 ccttcatctt cacgtggtgt tctccctgga tgtgtgtctg tatccaaatt tccccatttt
     1201 atagggacac tagtcttatt ggattagggg cccaccatac tccaatatga tctcatctta
     1261 attcattaca tctgcaaaga caatctgaga tattggggga ttaggagttc aatatatgaa
     1321 ttttgagggg gacacacttc aacacgtaac tgatatccat cgtgtgatga agccccgagc
     1381 cagagggaag actgaacaca aaggccatga aaagcaaaag ggtctggcat attctggaaa
     1441 ccaaaagaag gtgaatgtga cttaagagtt ctgaatgaag gtaagaagga cacaggcagg
     1501 tgggcagagg ccagatcaag gactttggat tttattccaa gatcaatggg aagattttga
     1561 agggttctgt ggtcttaaaa ggtcacgcta taaatttccc aactgtctcc tcaacatcaa
     1621 tgaaatgcaa ggatttctta atttgtgtat ttctcagaag aatttgtaac tgttcttgca
     1681 ctgacctctc agttcattac atgatgaatt tgttgaggaa acaatgcatt ggggatattt
     1741 tgaaacagtt taatcttctt tttcatttct ttttggcatt cctaaggtat ttctttccct
     1801 ttaactttct gtctgatttt catctccaca aataaaagaa gtaaattttt acttcattct
     1861 ttttacccta tccccataaa aacttccctt aaaaaaaaag aagatatatt caactgtgga
     1921 ttccgggcac atgctatttt cctgttttga gtgaatgatg ataattttca gagattgtgt
     1981 caccacaaaa tcaacattca ttccaaaatt taatggtttc aaatgtattt ctttttttga
     2041 tttctaaaaa ttttcaaatt tcttttccat cagaaacccc ttgtgtgtaa taaatagttt
     2101 ccacaaaact gaatttttgt tggcagaaca atcggcgtaa gtaaaacttc acgatttgcc
     2161 ttgggtgttt tgtaatttga aagcaaatgt tggtttaaac agcccaccat atattttgtc
     2221 aatgtccagc tgtggatgct gggtttttag caccacttct ttccggacaa ccaaaaaaaa
     2281 tatcactttc tttcctgttt tacatattga ggttctgcgt aagatttcat ttggggaaaa
     2341 ggttctgtcg ctttaaaaaa aaaatggaaa aaagccacca atactactgg aagttagttt
     2401 tgcttcattt tcctataacc ggagataaga aagaaaacac gacaaaccat aagtgaagac
     2461 ccttaagact gaaggagaga aagaaatatg cagacccagg aacagacgcc cgagggaggg
     2521 ttgatgggtg agttcactct gggtggctgg gcggagccag cctctgcgaa ggggccaaca
     2581 ttgtaggttc accctcactt gagttgctca ggttgtctcc atatttcctt gtttttattt
     2641 cctaccttga tgagaacttt tcatcttttc agggatgcag aaccaacaga ttcatgacaa
     2701 ctcgtttcac aattcatcat atttcctatt ttacttgctc aacttccaca tataacagga
     2761 ttggcagaag ggagagaaaa caactcattt gaaggcagta aagggtagga tgtctctgtc
     2821 tctgtctctc tctctgtctc tgtctctctc tctcacacac acacacacac acacagtaga
     2881 ggaggattct ctgcatgcag aaactcaatt cagaacattt ttcccacaga aataataaga
     2941 aaccatgatg gtaaaagtat atagttttcc ttcattatgg gttaaaatag gagtttgtgg
     3001 gctggcccgg gaatacacca ttttataaca tcgtacacgt gggaaacttg cattctgaaa
     3061 tctagacagc tgttttcaaa agacactatg agggctcagt gcgtttatgt gggcctgcgg
     3121 ctgcccaccc tctgcaggac cgtgctcagc agtttggagg cgatgaggaa gaaagaggcc
     3181 tgcttcctga tcttgaggca tttgcagtcc acgttgggag tcagggccca cagtgcaaag
     3241 atgattattt caaagtagaa atggcatgtg gccccactcc caggtaacat tttaatacat
     3301 tcatttatct gttcattcag catctgtttc ttgactttat agtaattatc tctctatttt
     3361 tatagtctaa atgatatttt ctaatataaa taatacatga ttatagaaga atattagagc
     3421 aatacagact tctctgtagt gacaaaatca gaaagaactt gaatgttgat aactgaatga
     3481 ttgaatcaac tggggttgat ccattctgtg ggatgttatg caccaataaa aaagaacaaa
     3541 ttaagaatat ctgttgttct ggacagggga ccaggatgta ttataaagaa tgaagatcaa
     3601 gatggaaaga aagtttccta ttttgatctc ctttttgcaa agacaacagt ggacaccccc
     3661 aaaaaagttt gaattcgaaa ggataaaggt gtagatatga agctgttaat aatggtcacc
     3721 ttaaggacag ttaaggatct ggaaatgaga tcattctgga ccatcctggt gggcccccaa
     3781 tccaaagaca agtgtcctta taaaagaaga gaagaagaca cagccacaga ggacaagtcc
     3841 acgtgagcac aaaggcgaga ctacagtgat gcagctgcaa aagccaagga atgctcggaa
     3901 ccacgggaaa ctggaagagg cgaggaagga ttctccccag agccgtcctg ggccaagaac
     3961 tccggtcgta tgtatgcttt gctgtaaata taatattaat aactactgat taaccacctc
     4021 tacctttcta agtacataaa atcaaatagg tctaagatct ttaaccctac aactgtctac
     4081 ttcatgccca gattctgggt tggttagatt tttatcacac ctcatctcaa cctcgtggtc
     4141 ttatgtggtc ccataaggga tccagggtga ttcatccccc tttttcaagt tgataatttg
     4201 ccaatatcag gcaaattcgt gactttggtg tttcttacat ttttatgctg attcaatgtc
     4261 aggtaagatt aagagattgg gagaacatgg aatggtgtat aaaggttggt ttttgttaat
     4321 tctggcaaaa ggatcaagtt tgtttttttc tctcg
//
LOCUS       XR_004347832            3681 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X8, ncRNA.
ACCESSION   XR_004347832
VERSION     XR_004347832.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3681
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..3681
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X8"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaaggat ggacatccta ggaccgtcta cctggatgca tcagaactca tttcttttca
      361 agggagtcga gaaaggacag gttacttggc catgcagcaa ttgacctctc catgactgaa
      421 gcttaaagat acattcaaga aagtttcatc tccactacat ccaaaaggtg cacgacaatt
      481 cacacgtaca cctctcggcg ctgcctcctt ctcctgagat gcaactccaa gacatttcct
      541 agccgtgctc ctcaggtaag aacaaggcaa gaccaacccc tgctctcctg gagcttacat
      601 tctagtgggg gtgatgtcaa cagacagaca aacaaaccaa gaaaatagtt acagatttgt
      661 atccgtgttc tgagggaaac aaacacgact ttggatagaa aatactgggg gatctaggtg
      721 gtcaaggaag gtttctcaag gagaaaatga catttaagcc aaaacttgga ggagaggaga
      781 ctgtattcgt ttcctggggc tgccataaca cagtaccaca agccaggtgg tggaagtaac
      841 agaaacgcat tgcctcacag ttctggaagc tggaagtcca agatcaaggt gtccacagag
      901 ttggctcctt ctgagggtta tgggggaagg atctgttcct tgcctcctgg cttctggtgt
      961 tggccagcaa tcctgggcat tctttggctt gtagcagcat cactccatct ctcccttcat
     1021 cttcacgtgg tgttctccct ggatgtgtgt ctgtatccaa atttccccat tttataggga
     1081 cactagtctt attggattag gggcccacca tactccaata tgatctcatc ttaattcatt
     1141 acatctgcaa agacaatctg agatattggg ggattaggag ttcaatatat gaattttgag
     1201 ggggacacac ttcaacacgt aactgatatc catcgtgtga tgaagccccg agccagaggg
     1261 aagactgaac acaaaggcca tgaaaagcaa aagggtctgg catattctgg aaaccaaaag
     1321 aaggtgaatg tgacttaaga gttctgaatg aaggtaagaa ggacacaggc aggtgggcag
     1381 aggccagatc aaggactttg gattttattc caagatcaat gggaagattt tgaagggttc
     1441 tgtggtctta aaaggtcacg ctataaattt cccaactgtc tcctcaacat caatgaaatg
     1501 caaggatttc ttaatttgtg tatttctcag aagaatttgt aactgttctt gcactgacct
     1561 ctcagttcat tacatgatga atttgttgag gaaacaatgc attggggata ttttgaaaca
     1621 gtttaatctt ctttttcatt tctttttggc attcctaagg tatttctttc cctttaactt
     1681 tctgtctgat tttcatctcc acaaataaaa gaagtaaatt tttacttcat tctttttacc
     1741 ctatccccat aaaaacttcc cttaaaaaaa aagaagatat attcaactgt ggattccggg
     1801 cacatgctat tttcctgttt tgagtgaatg atgataattt tcagagattg tgtcaccaca
     1861 aaatcaacat tcattccaaa atttaatggt ttcaaatgta tttctttttt tgatttctaa
     1921 aaattttcaa atttcttttc catcagaaac cccttgtgtg taataaatag tttccacaaa
     1981 actgaatttt tgttggcaga acaatcggcg gatgcagaac caacagattc atgacaactc
     2041 gtttcacaat tcatcatatt tcctatttta cttgctcaac ttccacatat aacaggattg
     2101 gcagaaggga gagaaaacaa ctcatttgaa ggcagtaaag ggtaggatgt ctctgtctct
     2161 gtctctctct ctgtctctgt ctctctctct cacacacaca cacacacaca cagtagagga
     2221 ggattctctg catgcagaaa ctcaattcag aacatttttc ccacagaaat aataagaaac
     2281 catgatggta aaagtatata gttttccttc attatgggtt aaaataggag tttgtgggct
     2341 ggcccgggaa tacaccattt tataacatcg tacacgtggg aaacttgcat tctgaaatct
     2401 agacagctgt tttcaaaaga cactatgagg gctcagtgcg tttatgtggg cctgcggctg
     2461 cccaccctct gcaggaccgt gctcagcagt ttggaggcga tgaggaagaa agaggcctgc
     2521 ttcctgatct tgaggcattt gcagtccacg ttgggagtca gggcccacag tgcaaagatg
     2581 attatttcaa agtagaaatg gcatgtggcc ccactcccag gtaacatttt aatacattca
     2641 tttatctgtt cattcagcat ctgtttcttg actttatagt aattatctct ctatttttat
     2701 agtctaaatg atattttcta atataaataa tacatgatta tagaagaata ttagagcaat
     2761 acagacttct ctgtagtgac aaaatcagaa agaacttgaa tgttgataac tgaatgattg
     2821 aatcaactgg ggttgatcca ttctgtggga tgttatgcac caataaaaaa gaacaaatta
     2881 agaatatctg ttgttctgga caggggacca ggatgtatta taaagaatga agatcaagat
     2941 ggaaagaaag tttcctattt tgatctcctt tttgcaaaga caacagtgga cacccccaaa
     3001 aaagtttgaa ttcgaaagga taaaggtgta gatatgaagc tgttaataat ggtcacctta
     3061 aggacagtta aggatctgga aatgagatca ttctggacca tcctggtggg cccccaatcc
     3121 aaagacaagt gtccttataa aagaagagaa gaagacacag ccacagagga caagtccacg
     3181 tgagcacaaa ggcgagacta cagtgatgca gctgcaaaag ccaaggaatg ctcggaacca
     3241 cgggaaactg gaagaggcga ggaaggattc tccccagagc cgtcctgggc caagaactcc
     3301 ggtcgtatgt atgctttgct gtaaatataa tattaataac tactgattaa ccacctctac
     3361 ctttctaagt acataaaatc aaataggtct aagatcttta accctacaac tgtctacttc
     3421 atgcccagat tctgggttgg ttagattttt atcacacctc atctcaacct cgtggtctta
     3481 tgtggtccca taagggatcc agggtgattc atcccccttt ttcaagttga taatttgcca
     3541 atatcaggca aattcgtgac tttggtgttt cttacatttt tatgctgatt caatgtcagg
     3601 taagattaag agattgggag aacatggaat ggtgtataaa ggttggtttt tgttaattct
     3661 ggcaaaagga tcaagtttgt t
//
LOCUS       XR_004347833            4318 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X9, ncRNA.
ACCESSION   XR_004347833
VERSION     XR_004347833.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4318
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4318
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..4318
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X9"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaagtag ctgagcgtgt aaccatttga agggcagctg tcatcaggga caccgcctgg
      361 agctccgtct gggggcgaaa aggaaggcct tcccctagat ggacatccta ggaccgtcta
      421 cctggatgca tcagaactca tttcttttca agggagtcga gaaaggacag gttacttggc
      481 catgcagcaa ttgacctctc catgactgaa gcttaaagat acattcaaga aagtttcatc
      541 tccactacat ccaaaaggtg cacgacaatt cacacgtaca cctctcggcg ctgcctcctt
      601 ctcctgagat gcaactccaa gacatttcct agccgtgctc ctcaggtaag aacaaggcaa
      661 gaccaacccc tgctctcctg gagcttacat tctagtgggg gtgatgtcaa cagacagaca
      721 aacaaaccaa gaaaatagtt acagatttgt atccgtgttc tgagggaaac aaacacgact
      781 ttggatagaa aatactgggg gatctaggtg gtcaaggaag gtttctcaag gagaaaatga
      841 catttaagcc aaaacttgga ggagaggaga ctgtattcgt ttcctggggc tgccataaca
      901 cagtaccaca agccaggtgg tggaagtaac agaaacgcat tgcctcacag ttctggaagc
      961 tggaagtcca agatcaaggt gtccacagag ttggctcctt ctgagggtta tgggggaagg
     1021 atctgttcct tgcctcctgg cttctggtgt tggccagcaa tcctgggcat tctttggctt
     1081 gtagcagcat cactccatct ctcccttcat cttcacgtgg tgttctccct ggatgtgtgt
     1141 ctgtatccaa atttccccat tttataggga cactagtctt attggattag gggcccacca
     1201 tactccaata tgatctcatc ttaattcatt acatctgcaa agacaatctg agatattggg
     1261 ggattaggag ttcaatatat gaattttgag ggggacacac ttcaacacgt aactgatatc
     1321 catcgtgtga tgaagccccg agccagaggg aagactgaac acaaaggcca tgaaaagcaa
     1381 aagggtctgg catattctgg aaaccaaaag aaggtgaatg tgacttaaga gttctgaatg
     1441 aaggtaagaa ggacacaggc aggtgggcag aggccagatc aaggactttg gattttattc
     1501 caagatcaat gggaagattt tgaagggttc tgtggtctta aaaggtcacg ctataaattt
     1561 cccaactgtc tcctcaacat caatgaaatg caaggatttc ttaatttgtg tatttctcag
     1621 aagaatttgt aactgttctt gcactgacct ctcagttcat tacatgatga atttgttgag
     1681 gaaacaatgc attggggata ttttgaaaca gtttaatctt ctttttcatt tctttttggc
     1741 attcctaagg tatttctttc cctttaactt tctgtctgat tttcatctcc acaaataaaa
     1801 gaagtaaatt tttacttcat tctttttacc ctatccccat aaaaacttcc cttaaaaaaa
     1861 aagaagatat attcaactgt ggattccggg cacatgctat tttcctgttt tgagtgaatg
     1921 atgataattt tcagagattg tgtcaccaca aaatcaacat tcattccaaa atttaatggt
     1981 ttcaaatgta tttctttttt tgatttctaa aaattttcaa atttcttttc catcagaaac
     2041 cccttgtgtg taataaatag tttccacaaa actgaatttt tgttggcaga acaatcggcg
     2101 taagtaaaac ttcacgattt gccttgggtg ttttgtaatt tgaaagcaaa tgttggttta
     2161 aacagcccac catatatttt gtcaatgtcc agctgtggat gctgggtttt tagcaccact
     2221 tctttccgga caaccaaaaa aaatatcact ttctttcctg ttttacatat tgaggttctg
     2281 cgtaagattt catttgggga aaaggttctg tcgctttaaa aaaaaaatgg aaaaaagcca
     2341 ccaatactac tggaagttag ttttgcttca ttttcctata accggagata agaaagaaaa
     2401 cacgacaaac cataagtgaa gacccttaag actgaaggag agaaagaaat atgcagaccc
     2461 aggaacagac gcccgaggga gggttgatgg gtgagttcac tctgggtggc tgggcggagc
     2521 cagcctctgc gaaggggcca acattgtagg ttcaccctca cttgagttgc tcaggttgtc
     2581 tccatatttc cttgttttta tttcctacct tgatgagaac ttttcatctt ttcagggatg
     2641 cagaaccaac agattcatga caactcgttt cacaattcat catatttcct attttacttg
     2701 ctcaacttcc acatataaca ggattggcag aagggagaga aaacaactca tttgaaggca
     2761 gtaaagggta ggatgtctct gtctctgtct ctctctctgt ctctgtctct ctctctcaca
     2821 cacacacaca cacacacagt agaggaggat tctctgcatg cagaaactca attcagaaca
     2881 tttttcccac agaaataata agaaaccatg atggtaaaag tatatagttt tccttcatta
     2941 tgggttaaaa taggagtttg tgggctggcc cgggaataca ccattttata acatcgtaca
     3001 cgtgggaaac ttgcattctg aaatctagac agctgttttc aaaagacact atgagggctc
     3061 agtgcgttta tgtgggcctg cggctgccca ccctctgcag gaccgtgctc agcagtttgg
     3121 aggcgatgag gaagaaagag gcctgcttcc tgatcttgag gcatttgcag tccacgttgg
     3181 gagtcagggc ccacagtgca aagatgatta tttcaaagta gaaatggcat gtggccccac
     3241 tcccaggtaa cattttaata cattcattta tctgttcatt cagcatctgt ttcttgactt
     3301 tatagtaatt atctctctat ttttatagtc taaatgatat tttctaatat aaataataca
     3361 tgattataga agaatattag agcaatacag acttctctgt agtgacaaaa tcagaaagaa
     3421 cttgaatgtt gataactgaa tgattgaatc aactggggtt gatccattct gtgggatgtt
     3481 atgcaccaat aaaaaagaac aaattaagaa tatctgttgt tctggacagg ggaccaggat
     3541 gtattataaa gaatgaagat caagatggaa agaaagtttc ctattttgat ctcctttttg
     3601 caaagacaac agtggacacc cccaaaaaag tttgaattcg aaaggataaa ggtgtagata
     3661 tgaagctgtt aataatggtc accttaagga cagttaagga tctggaaatg agatcattct
     3721 ggaccatcct ggtgggcccc caatccaaag acaagtgtcc ttataaaaga agagaagaag
     3781 acacagccac agaggacaag tccacgtgag cacaaaggcg agactacagt gatgcagctg
     3841 caaaagccaa ggaatgctcg gaaccacggg aaactggaag aggcgaggaa ggattctccc
     3901 cagagccgtc ctgggccaag aactccggtc gtatgtatgc tttgctgtaa atataatatt
     3961 aataactact gattaaccac ctctaccttt ctaagtacat aaaatcaaat aggtctaaga
     4021 tctttaaccc tacaactgtc tacttcatgc ccagattctg ggttggttag atttttatca
     4081 cacctcatct caacctcgtg gtcttatgtg gtcccataag ggatccaggg tgattcatcc
     4141 ccctttttca agttgataat ttgccaatat caggcaaatt cgtgactttg gtgtttctta
     4201 catttttatg ctgattcaat gtcaggtaag attaagagat tgggagaaca tggaatggtg
     4261 tataaaggtt ggtttttgtt aattctggca aaaggatcaa gtttgttttt ttctctcg
//
LOCUS       XR_004347834            3866 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X10, ncRNA.
ACCESSION   XR_004347834
VERSION     XR_004347834.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3866
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..3866
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X10"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagg tacctacctg actctccatc ctaagggtca
      301 cctgaaggat ggacatccta ggaccgtcta cctggatgca tcagaactca tttcttttca
      361 agggagtcga gaaaggacag gttacttggc catgcagcaa ttgacctctc catgactgaa
      421 gcttaaagat acattcaaga aagtttcatc tccactacat ccaaaaggtg cacgacaatt
      481 cacacgtaca cctctcggcg ctgcctcctt ctcctgagat gcaactccaa gacatttcct
      541 agccgtgctc ctcaggtaag aacaaggcaa gaccaacccc tgctctcctg gagcttacat
      601 tctagtgggg gtgatgtcaa cagacagaca aacaaaccaa gaaaatagtt acagatttgt
      661 atccgtgttc tgagggaaac aaacacgact ttggatagaa aatactgggg gatctaggtg
      721 gtcaaggaag gtttctcaag gagaaaatga catttaagcc aaaacttgga ggagaggaga
      781 ctgtattcgt ttcctggggc tgccataaca cagtaccaca agccaggtgg tggaagtaac
      841 agaaacgcat tgcctcacag ttctggaagc tggaagtcca agatcaaggt gtccacagag
      901 ttggctcctt ctgagggtta tgggggaagg atctgttcct tgcctcctgg cttctggtgt
      961 tggccagcaa tcctgggcat tctttggctt gtagcagcat cactccatct ctcccttcat
     1021 cttcacgtgg tgttctccct ggatgtgtgt ctgtatccaa atttccccat tttataggga
     1081 cactagtctt attggattag gggcccacca tactccaata tgatctcatc ttaattcatt
     1141 acatctgcaa agacaatctg agatattggg ggattaggag ttcaatatat gaattttgag
     1201 ggggacacac ttcaacacgt aactgatatc catcgtgtga tgaagccccg agccagaggg
     1261 aagactgaac acaaaggcca tgaaaagcaa aagggtctgg catattctgg aaaccaaaag
     1321 aaggtgaatg tgacttaaga gttctgaatg aaggtaagaa ggacacaggc aggtgggcag
     1381 aggccagatc aaggactttg gattttattc caagatcaat gggaagattt tgaagggttc
     1441 tgtggtctta aaaggtcacg ctataaattt cccaactgtc tcctcaacat caatgaaatg
     1501 caaggatttc ttaatttgtg tatttctcag aagaatttgt aactgttctt gcactgacct
     1561 ctcagttcat tacatgatga atttgttgag gaaacaatgc attggggata ttttgaaaca
     1621 gtttaatctt ctttttcatt tctttttggc attcctaagg tatttctttc cctttaactt
     1681 tctgtctgat tttcatctcc acaaataaaa gaagtaaatt tttacttcat tctttttacc
     1741 ctatccccat aaaaacttcc cttaaaaaaa aagaagatat attcaactgt ggattccggg
     1801 cacatgctat tttcctgttt tgagtgaatg atgataattt tcagagattg tgtcaccaca
     1861 aaatcaacat tcattccaaa atttaatggt ttcaaatgta tttctttttt tgatttctaa
     1921 aaattttcaa atttcttttc catcagaaac cccttgtgtg taataaatag tttccacaaa
     1981 actgaatttt tgttggcaga acaatcggcg taagtaaaac ttcacgattt gccttgggtg
     2041 ttttgtaatt tgaaagcaaa tgttggttta aacagcccac catatatttt gtcaatgtcc
     2101 agctgtggat gctgggtttt tagcaccact tctttccgga caaccaaaaa aaatatcact
     2161 ttctttcctg ttttacatat tgaggttctg cgtaagattt catttgggga aaaggttctg
     2221 tcgctttaaa aaaaaaatgg aaaaaagcca ccaatactac tggaagttag ttttgcttca
     2281 ttttcctata accggagata agaaagaaaa cacgacaaac cataagtgaa gacccttaag
     2341 actgaaggag agaaagaaat atgcagaccc aggaacagac gcccgaggga gggttgatgg
     2401 gtgagttcac tctgggtggc tgggcggagc cagcctctgc gaaggggcca acattgtagg
     2461 ttcaccctca cttgagttgc tcaggttgtc tccatatttc cttgttttta tttcctacct
     2521 tgatgagaac ttttcatctt ttcagggatg cagaaccaac agattcatga caactcgttt
     2581 cacaatacag ctgttttcaa aagacactat gagggctcag tgcgtttatg tgggcctgcg
     2641 gctgcccacc ctctgcagga ccgtgctcag cagtttggag gcgatgagga agaaagaggc
     2701 ctgcttcctg atcttgaggc atttgcagtc cacgttggga gtcagggccc acagtgcaaa
     2761 gatgattatt tcaaagtaga aatggcatgt ggccccactc ccaggtaaca ttttaataca
     2821 ttcatttatc tgttcattca gcatctgttt cttgacttta tagtaattat ctctctattt
     2881 ttatagtcta aatgatattt tctaatataa ataatacatg attatagaag aatattagag
     2941 caatacagac ttctctgtag tgacaaaatc agaaagaact tgaatgttga taactgaatg
     3001 attgaatcaa ctggggttga tccattctgt gggatgttat gcaccaataa aaaagaacaa
     3061 attaagaata tctgttgttc tggacagggg accaggatgt attataaaga atgaagatca
     3121 agatggaaag aaagtttcct attttgatct cctttttgca aagacaacag tggacacccc
     3181 caaaaaagtt tgaattcgaa aggataaagg tgtagatatg aagctgttaa taatggtcac
     3241 cttaaggaca gttaaggatc tggaaatgag atcattctgg accatcctgg tgggccccca
     3301 atccaaagac aagtgtcctt ataaaagaag agaagaagac acagccacag aggacaagtc
     3361 cacgtgagca caaaggcgag actacagtga tgcagctgca aaagccaagg aatgctcgga
     3421 accacgggaa actggaagag gcgaggaagg attctcccca gagccgtcct gggccaagaa
     3481 ctccggtcgt atgtatgctt tgctgtaaat ataatattaa taactactga ttaaccacct
     3541 ctacctttct aagtacataa aatcaaatag gtctaagatc tttaacccta caactgtcta
     3601 cttcatgccc agattctggg ttggttagat ttttatcaca cctcatctca acctcgtggt
     3661 cttatgtggt cccataaggg atccagggtg attcatcccc ctttttcaag ttgataattt
     3721 gccaatatca ggcaaattcg tgactttggt gtttcttaca tttttatgct gattcaatgt
     3781 caggtaagat taagagattg ggagaacatg gaatggtgta taaaggttgg tttttgttaa
     3841 ttctggcaaa aggatcaagt ttgttt
//
LOCUS       XR_004347835            4280 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746661
            (LOC116746661), transcript variant X11, ncRNA.
ACCESSION   XR_004347835
VERSION     XR_004347835.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4280
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4280
                     /gene="LOC116746661"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746661"
     ncRNA           1..4280
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746661"
                     /product="uncharacterized LOC116746661, transcript variant
                     X11"
                     /db_xref="GeneID:116746661"
ORIGIN      
        1 ggagggaggg cgcgagctgc ccggcctgga ggtgcggaag ttcgccgccg ctgttcattg
       61 gcaggcagcg ccgctttcat catttctcag aaaagtcaat ttcattttca cttacccacg
      121 tcgcggcagc tggagcaaca agcggctgcg cgtgagtctg ctgctcgcac acccgggcgc
      181 tcacactcga gtgggggtcc ggggggtggg gtactgggcg cgagcttggg ttccggccgt
      241 aagctggcgg cggtaggagg ggaccgcagt agctgagcgt gtaaccattt gaagggcagc
      301 tgtcatcagg gacaccgcct ggagctccgt ctgggggcga aaaggaaggc cttcccctag
      361 atggacatcc taggaccgtc tacctggatg catcagaact catttctttt caagggagtc
      421 gagaaaggac aggttacttg gccatgcagc aattgacctc tccatgactg aagcttaaag
      481 atacattcaa gaaagtttca tctccactac atccaaaagg tgcacgacaa ttcacacgta
      541 cacctctcgg cgctgcctcc ttctcctgag atgcaactcc aagacatttc ctagccgtgc
      601 tcctcaggta agaacaaggc aagaccaacc cctgctctcc tggagcttac attctagtgg
      661 gggtgatgtc aacagacaga caaacaaacc aagaaaatag ttacagattt gtatccgtgt
      721 tctgagggaa acaaacacga ctttggatag aaaatactgg gggatctagg tggtcaagga
      781 aggtttctca aggagaaaat gacatttaag ccaaaacttg gaggagagga gactgtattc
      841 gtttcctggg gctgccataa cacagtacca caagccaggt ggtggaagta acagaaacgc
      901 attgcctcac agttctggaa gctggaagtc caagatcaag gtgtccacag agttggctcc
      961 ttctgagggt tatgggggaa ggatctgttc cttgcctcct ggcttctggt gttggccagc
     1021 aatcctgggc attctttggc ttgtagcagc atcactccat ctctcccttc atcttcacgt
     1081 ggtgttctcc ctggatgtgt gtctgtatcc aaatttcccc attttatagg gacactagtc
     1141 ttattggatt aggggcccac catactccaa tatgatctca tcttaattca ttacatctgc
     1201 aaagacaatc tgagatattg ggggattagg agttcaatat atgaattttg agggggacac
     1261 acttcaacac gtaactgata tccatcgtgt gatgaagccc cgagccagag ggaagactga
     1321 acacaaaggc catgaaaagc aaaagggtct ggcatattct ggaaaccaaa agaaggtgaa
     1381 tgtgacttaa gagttctgaa tgaaggtaag aaggacacag gcaggtgggc agaggccaga
     1441 tcaaggactt tggattttat tccaagatca atgggaagat tttgaagggt tctgtggtct
     1501 taaaaggtca cgctataaat ttcccaactg tctcctcaac atcaatgaaa tgcaaggatt
     1561 tcttaatttg tgtatttctc agaagaattt gtaactgttc ttgcactgac ctctcagttc
     1621 attacatgat gaatttgttg aggaaacaat gcattgggga tattttgaaa cagtttaatc
     1681 ttctttttca tttctttttg gcattcctaa ggtatttctt tccctttaac tttctgtctg
     1741 attttcatct ccacaaataa aagaagtaaa tttttacttc attcttttta ccctatcccc
     1801 ataaaaactt cccttaaaaa aaaagaagat atattcaact gtggattccg ggcacatgct
     1861 attttcctgt tttgagtgaa tgatgataat tttcagagat tgtgtcacca caaaatcaac
     1921 attcattcca aaatttaatg gtttcaaatg tatttctttt tttgatttct aaaaattttc
     1981 aaatttcttt tccatcagaa accccttgtg tgtaataaat agtttccaca aaactgaatt
     2041 tttgttggca gaacaatcgg cgtaagtaaa acttcacgat ttgccttggg tgttttgtaa
     2101 tttgaaagca aatgttggtt taaacagccc accatatatt ttgtcaatgt ccagctgtgg
     2161 atgctgggtt tttagcacca cttctttccg gacaaccaaa aaaaatatca ctttctttcc
     2221 tgttttacat attgaggttc tgcgtaagat ttcatttggg gaaaaggttc tgtcgcttta
     2281 aaaaaaaaat ggaaaaaagc caccaatact actggaagtt agttttgctt cattttccta
     2341 taaccggaga taagaaagaa aacacgacaa accataagtg aagaccctta agactgaagg
     2401 agagaaagaa atatgcagac ccaggaacag acgcccgagg gagggttgat gggtgagttc
     2461 actctgggtg gctgggcgga gccagcctct gcgaaggggc caacattgta ggttcaccct
     2521 cacttgagtt gctcaggttg tctccatatt tccttgtttt tatttcctac cttgatgaga
     2581 acttttcatc ttttcaggga tgcagaacca acagattcat gacaactcgt ttcacaattc
     2641 atcatatttc ctattttact tgctcaactt ccacatataa caggattggc agaagggaga
     2701 gaaaacaact catttgaagg cagtaaaggg taggatgtct ctgtctctgt ctctctctct
     2761 gtctctgtct ctctctctca cacacacaca cacacacaca gtagaggagg attctctgca
     2821 tgcagaaact caattcagaa catttttccc acagaaataa taagaaacca tgatggtaaa
     2881 agtatatagt tttccttcat tatgggttaa aataggagtt tgtgggctgg cccgggaata
     2941 caccatttta taacatcgta cacgtgggaa acttgcattc tgaaatctag acagctgttt
     3001 tcaaaagaca ctatgagggc tcagtgcgtt tatgtgggcc tgcggctgcc caccctctgc
     3061 aggaccgtgc tcagcagttt ggaggcgatg aggaagaaag aggcctgctt cctgatcttg
     3121 aggcatttgc agtccacgtt gggagtcagg gcccacagtg caaagatgat tatttcaaag
     3181 tagaaatggc atgtggcccc actcccaggt aacattttaa tacattcatt tatctgttca
     3241 ttcagcatct gtttcttgac tttatagtaa ttatctctct atttttatag tctaaatgat
     3301 attttctaat ataaataata catgattata gaagaatatt agagcaatac agacttctct
     3361 gtagtgacaa aatcagaaag aacttgaatg ttgataactg aatgattgaa tcaactgggg
     3421 ttgatccatt ctgtgggatg ttatgcacca ataaaaaaga acaaattaag aatatctgtt
     3481 gttctggaca ggggaccagg atgtattata aagaatgaag atcaagatgg aaagaaagtt
     3541 tcctattttg atctcctttt tgcaaagaca acagtggaca cccccaaaaa agtttgaatt
     3601 cgaaaggata aaggtgtaga tatgaagctg ttaataatgg tcaccttaag gacagttaag
     3661 gatctggaaa tgagatcatt ctggaccatc ctggtgggcc cccaatccaa agacaagtgt
     3721 ccttataaaa gaagagaaga agacacagcc acagaggaca agtccacgtg agcacaaagg
     3781 cgagactaca gtgatgcagc tgcaaaagcc aaggaatgct cggaaccacg ggaaactgga
     3841 agaggcgagg aaggattctc cccagagccg tcctgggcca agaactccgg tcgtatgtat
     3901 gctttgctgt aaatataata ttaataacta ctgattaacc acctctacct ttctaagtac
     3961 ataaaatcaa ataggtctaa gatctttaac cctacaactg tctacttcat gcccagattc
     4021 tgggttggtt agatttttat cacacctcat ctcaacctcg tggtcttatg tggtcccata
     4081 agggatccag ggtgattcat cccccttttt caagttgata atttgccaat atcaggcaaa
     4141 ttcgtgactt tggtgtttct tacattttta tgctgattca atgtcaggta agattaagag
     4201 attgggagaa catggaatgg tgtataaagg ttggtttttg ttaattctgg caaaaggatc
     4261 aagtttgttt ttttctctcg
//
LOCUS       XR_004347836             956 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746662
            (LOC116746662), ncRNA.
ACCESSION   XR_004347836
VERSION     XR_004347836.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..956
                     /gene="LOC116746662"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746662"
     ncRNA           1..956
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746662"
                     /product="uncharacterized LOC116746662"
                     /db_xref="GeneID:116746662"
ORIGIN      
        1 caaggtggag tcaattcact cttcttattc gttctgctag aaagcctgga tgttataaag
       61 caaatataga aaactctgaa aggggagagg aggagggaga tggggaaatg accttagaac
      121 ccagggagtg atgtggcagt gagttccctg agttttctta ttgtctcatg catcctggat
      181 tgaataacag agaagctggc aacacagaaa gggcagtggg tgcaaaccaa aaaaaaaaaa
      241 aaaaaaaagc ttccaaagaa aggggcagcc taggaagaca gaaaacgttt agacaataac
      301 cagcccgctc aagccaacac gacaggaaac gacctcgctc cacacccagc tgaacaccaa
      361 gggcacccag gcagcagaac ctcttcttcc tcaaacacag gggttagcaa cccattctcc
      421 atcaagttca aaatcagtaa tggcatcatg gtgttttccc aagggtgacc tgaggctaca
      481 aggacaaagg acaggcccgt tactctcacc tagatctgcc aaagactaaa attcaacctg
      541 tgttccaagc ttcctgagct ctaattccac agtcctgttt gcacatttgg tggcttgtcc
      601 ttcgccccac tcagtccact tgggggctgt ctcaacccat ctgagatcta ctgtcgaacg
      661 gaagacgaca cgcacagttg ccaaaccaag tctccctgtc cgtcgggcat tcgctgaggg
      721 caccctcgct gtctgaaatg agaactctca gaactgcacc gtctgacctt ctgacactct
      781 tagtctacgt aatgcaggag aaactacaat tcccgtgggg ctctgctcct gggcgcccgc
      841 ctccacccct gcgcctgcgc attctgagca tggactacaa ctcccagact gcatcgtgct
      901 gccgccctcg cccctctact tcctgctggg gcgtttcgtg acagcttctc ttcgag
//
LOCUS       XR_004347837             585 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746663
            (LOC116746663), ncRNA.
ACCESSION   XR_004347837
VERSION     XR_004347837.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..585
                     /gene="LOC116746663"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746663"
     ncRNA           1..585
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746663"
                     /product="uncharacterized LOC116746663"
                     /db_xref="GeneID:116746663"
ORIGIN      
        1 cgtgtcgtct tccgttcgac agtagatctc agatgggttg agacagcccc caagtggact
       61 gagtggggcg aaggacaagc caccaaatgt gcaaacagga ctgtggaact gtgagaaaat
      121 agtgtagaat taaggtgcca tttggcatat gaggaagttt ctgatgaaaa actcccatgg
      181 aaaagtgata tttgaggttc atctttgcct ggacaaggcc cagttccctc tgctttgctt
      241 cccgcgttgc ttactgaccc agatctgcac cactcccgat gccctcctgc cccgcctgca
      301 gccagcactg agtcaacaag caaaatctca catgtaatat tctgagattc aaccctcagg
      361 taataattct cctgcattta gtccttcata tcctttggtt cacagagaca ttgagtctag
      421 tgccttgaaa tggctgacct aaataatatc cctagatttt tgaagataat ataaagttta
      481 ttttagtaac aaccgtgagt catcacagaa gctaatgaac ttgggaattc tatataaaat
      541 catccaagca tataaagcct attttccaag gttccttttt ctcag
//
LOCUS       XM_032618207            3009 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycerol-3-phosphate acyltransferase 4
            (GPAT4), transcript variant X1, mRNA.
ACCESSION   XM_032618207
VERSION     XM_032618207.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3009
                     /gene="GPAT4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 mRNAs, 16 long SRA reads, 21
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746664"
     CDS             976..2346
                     /gene="GPAT4"
                     /codon_start=1
                     /product="glycerol-3-phosphate acyltransferase 4 isoform
                     X1"
                     /protein_id="XP_032474098.1"
                     /db_xref="GeneID:116746664"
                     /translation="MFLLLPFDSLIVSLLGISLTVLFTLLLVFIIAPAIFGVSFGIRK
                     LYMKTLLKIFAWATLRMERGAKEKNHQLYKPYTNGIIAKDPTSLEEEIKEIRRSGSSK
                     ALDDTREFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRL
                     TVLWGLGVLIRYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFKEFLSKHVHLMCY
                     RICVRALTAIITYHDRKNRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGV
                     IQRAMVKACPHVWFERSEVKDRHLVAKRLTEHVQDKSKLPILIFPEGTCINNTSVMMF
                     KKGSFEIGATVYPVAIKYDPQFGDAFWNSSKYGMVTYLLRMMTSWAIVCSVWYLPPMT
                     REAEEDAVQFANRVKSAIARQGGLVDLLWDGGLKREKVKDTFKEEQQKLYSKMIVGNH
                     EDRSRS"
     misc_feature    1627..2256
                     /gene="GPAT4"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LPCAT1-like; Region:
                     LPLAT_LPCAT1-like; cd07991"
                     /db_xref="CDD:153253"
     misc_feature    order(1717..1719,1726..1728,1732..1734,1774..1785,
                     1942..1950)
                     /gene="GPAT4"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153253"
ORIGIN      
        1 agacgacggg agggtgggga ctggacgcga gggtcacgtc aaggcggcat agacaaaggg
       61 cgggcgcgcg cacgtcctta cgcacgcctc ggccggcggc ggcgagggcg gggcggacgg
      121 tccccggagc gatttgcctc ctggagcctc gaggaagctt cggcagcatg tgagcaactt
      181 cttgccaagg acccgggtca ccgctgagaa gggggcctta gggagaaaag tatccagagg
      241 aaaccagtgc cagacgcgtc tggaactcca cgcaccgcag gcagcatgag gcgtgccgtg
      301 ccagcacctg cggcctcctg gcacagcctc tagctctcca gagaggaggg tcctgggagc
      361 agtgcgcctg gagcctctcc aggggaagca cggggccagt gtgaaccctc tatgatggac
      421 gcaattttca gcttatgaag gagttttaag gaaaacagtt atttaatttc cacatattca
      481 tgttcgctag ccttctgtgg gaagtgccag cagtcaccct cctccactgg agttatcagg
      541 atttttctgg caccaagttg cactcttctt ggtacttctg gcaacgacac atcctcagga
      601 gagatttatc tgctaaatgc tcttggacag gagaaaaagt aaaacttctg gaagcagcgt
      661 gagagtagca gagcccagat cgcgccctcg ccgctcactc gcccagacac tctgtctggc
      721 ctcggatgct ggcactgaag actgaccctg ccccgtccac ccctgcagcc cgtctcttct
      781 gggggtggct ggccgcctcg ggggccccct tttgctctca tcctactccc aggctctctg
      841 ttccggccgt cgagtgacgt gaacttggga atggagttgg tgcccctccc caggccggtg
      901 ctgttggaga ggaccgtctg aggccgagct ttgttcgtgg ggaggagggc gctggcctgg
      961 cctgcatcct ccaccatgtt cctgttactg ccttttgaca gcctgattgt cagcctcctg
     1021 ggcatctccc tgaccgtcct cttcaccctc cttctggttt tcatcatagc ccccgccatt
     1081 ttcggagtct cctttggtat ccgaaagctc tacatgaaaa ctttgttaaa gatctttgcg
     1141 tgggcgacct tgaggatgga gcgaggcgcc aaggagaaga accaccagct ctacaagccc
     1201 tacaccaacg gaatcattgc aaaagatccc acgtcactag aagaagagat caaagaaatt
     1261 cgccggagtg gtagcagtaa ggctctggac gacactcgcg agtttgagct ctctgacatt
     1321 ttctacttct gccggaaagg gatggagacc attatggacg atgaggtgac aaagaggttc
     1381 tcggcagagg agttggagtc ctggaacttg ctgagcagga ccaattataa cttccagtac
     1441 atcagccttc ggctcaccgt gctctggggc ttaggagtgc tgattcggta ctgcttcctc
     1501 ctgcccctca ggatagctct tgctttcacg gggattagcc tcctggtggt aggcacaacg
     1561 gtggtgggat acctgccaaa cgggaggttt aaggagttcc tgagtaagca cgttcaccta
     1621 atgtgctatc gcatctgcgt acgagccctg acggccatca ttacctacca cgacaggaag
     1681 aaccggccta gaaatggcgg catctgcgtg gccaatcata cgtctcccat tgacgtcatc
     1741 attttggcca gtgatggcta ttacgccatg gtggggcagg tgcacggcgg cctcatgggc
     1801 gtcatccaga gagccatggt gaaggcctgc ccccacgtct ggttcgagcg ctcggaagtg
     1861 aaggatcgcc acctggtggc caaaaggctg accgagcacg tgcaggataa aagcaagctg
     1921 cccatcctca tcttcccgga gggaacctgc atcaacaata cgtctgtgat gatgttcaaa
     1981 aagggaagtt tcgaaattgg agccacagtt taccccgttg cgatcaagta tgacccccag
     2041 ttcggtgatg ctttctggaa cagcagcaag tacgggatgg tgacgtacct gctgaggatg
     2101 atgaccagct gggccatcgt ctgcagcgtg tggtacctgc ctcccatgac gagagaggcc
     2161 gaggaagatg ccgtccagtt cgcaaacagg gtgaagtccg ccattgccag gcagggaggc
     2221 cttgtggacc tgctgtggga cggtggtctg aagcgggaga aggtgaagga cacgttcaag
     2281 gaggaacagc agaagctgta cagcaagatg atcgttggca accacgagga ccggagccgg
     2341 tcctgagccc gcgctgccgc ccggccacct ccgcccggga cgcaggcgcc acgggccaat
     2401 gcgcacacag gactcttcgg gcttcttcga gccacccggg ctgctcccag gacgagctgc
     2461 cttcttgttc cttctctgcc gagtcggcgg gaggagtgcc attaaagtcc cctcgccacc
     2521 gtgcccgtgc ggcctgagtg ctgggcgaga gcctgccatc cccactcggg acccggggtg
     2581 cggtctgtcc ccgagacccg cctgcgggtg gggacctcac caggccaggc ccgccccgag
     2641 gaaggcgcag cctcggggcc ccgcagactc gagaagagaa catgtggtct gcaggggccc
     2701 tcggcagact gacggtcccc ggcctgggcc gctggctacg gggccgggcg ggcacgggga
     2761 ccggtcctcc cgctccggcc gcactctgcc agctcggcct cggctgcccc gctgtctcct
     2821 gggctggggg tgtggcgaca cctacctcac cgggttgctg tggcagctca cgcgctacca
     2881 cgaggggagg cctgtcagct cagcgttgcg gctccagggc ccagggtggg gcgggacgag
     2941 gggagctgga gctgcccacg gggctccagg tttgtttctg tgagtaaata aaattgtctt
     3001 cgatggtga
//
LOCUS       XM_032618208            2933 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycerol-3-phosphate acyltransferase 4
            (GPAT4), transcript variant X2, mRNA.
ACCESSION   XM_032618208
VERSION     XM_032618208.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2933
                     /gene="GPAT4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, 14 long SRA reads, 21
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746664"
     CDS             897..2267
                     /gene="GPAT4"
                     /codon_start=1
                     /product="glycerol-3-phosphate acyltransferase 4 isoform
                     X1"
                     /protein_id="XP_032474099.1"
                     /db_xref="GeneID:116746664"
                     /translation="MFLLLPFDSLIVSLLGISLTVLFTLLLVFIIAPAIFGVSFGIRK
                     LYMKTLLKIFAWATLRMERGAKEKNHQLYKPYTNGIIAKDPTSLEEEIKEIRRSGSSK
                     ALDDTREFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRL
                     TVLWGLGVLIRYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFKEFLSKHVHLMCY
                     RICVRALTAIITYHDRKNRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGV
                     IQRAMVKACPHVWFERSEVKDRHLVAKRLTEHVQDKSKLPILIFPEGTCINNTSVMMF
                     KKGSFEIGATVYPVAIKYDPQFGDAFWNSSKYGMVTYLLRMMTSWAIVCSVWYLPPMT
                     REAEEDAVQFANRVKSAIARQGGLVDLLWDGGLKREKVKDTFKEEQQKLYSKMIVGNH
                     EDRSRS"
     misc_feature    1548..2177
                     /gene="GPAT4"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LPCAT1-like; Region:
                     LPLAT_LPCAT1-like; cd07991"
                     /db_xref="CDD:153253"
     misc_feature    order(1638..1640,1647..1649,1653..1655,1695..1706,
                     1863..1871)
                     /gene="GPAT4"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153253"
ORIGIN      
        1 tgagttgagt catccttgag cctgacatat cctggctttg tcttggacca tctgttttat
       61 ccaggattgc tgttggccct tcggcagcat gtgagcaact tcttgccaag gacccgggtc
      121 accgctgaga agggggcctt agggagaaaa gtatccagag gaaaccagtg ccagacgcgt
      181 ctggaactcc acgcaccgca ggcagcatga ggcgtgccgt gccagcacct gcggcctcct
      241 ggcacagcct ctagctctcc agagaggagg gtcctgggag cagtgcgcct ggagcctctc
      301 caggggaagc acggggccag tgtgaaccct ctatgatgga cgcaattttc agcttatgaa
      361 ggagttttaa ggaaaacagt tatttaattt ccacatattc atgttcgcta gccttctgtg
      421 ggaagtgcca gcagtcaccc tcctccactg gagttatcag gatttttctg gcaccaagtt
      481 gcactcttct tggtacttct ggcaacgaca catcctcagg agagatttat ctgctaaatg
      541 ctcttggaca ggagaaaaag taaaacttct ggaagcagcg tgagagtagc agagcccaga
      601 tcgcgccctc gccgctcact cgcccagaca ctctgtctgg cctcggatgc tggcactgaa
      661 gactgaccct gccccgtcca cccctgcagc ccgtctcttc tgggggtggc tggccgcctc
      721 gggggccccc ttttgctctc atcctactcc caggctctct gttccggccg tcgagtgacg
      781 tgaacttggg aatggagttg gtgcccctcc ccaggccggt gctgttggag aggaccgtct
      841 gaggccgagc tttgttcgtg gggaggaggg cgctggcctg gcctgcatcc tccaccatgt
      901 tcctgttact gccttttgac agcctgattg tcagcctcct gggcatctcc ctgaccgtcc
      961 tcttcaccct ccttctggtt ttcatcatag cccccgccat tttcggagtc tcctttggta
     1021 tccgaaagct ctacatgaaa actttgttaa agatctttgc gtgggcgacc ttgaggatgg
     1081 agcgaggcgc caaggagaag aaccaccagc tctacaagcc ctacaccaac ggaatcattg
     1141 caaaagatcc cacgtcacta gaagaagaga tcaaagaaat tcgccggagt ggtagcagta
     1201 aggctctgga cgacactcgc gagtttgagc tctctgacat tttctacttc tgccggaaag
     1261 ggatggagac cattatggac gatgaggtga caaagaggtt ctcggcagag gagttggagt
     1321 cctggaactt gctgagcagg accaattata acttccagta catcagcctt cggctcaccg
     1381 tgctctgggg cttaggagtg ctgattcggt actgcttcct cctgcccctc aggatagctc
     1441 ttgctttcac ggggattagc ctcctggtgg taggcacaac ggtggtggga tacctgccaa
     1501 acgggaggtt taaggagttc ctgagtaagc acgttcacct aatgtgctat cgcatctgcg
     1561 tacgagccct gacggccatc attacctacc acgacaggaa gaaccggcct agaaatggcg
     1621 gcatctgcgt ggccaatcat acgtctccca ttgacgtcat cattttggcc agtgatggct
     1681 attacgccat ggtggggcag gtgcacggcg gcctcatggg cgtcatccag agagccatgg
     1741 tgaaggcctg cccccacgtc tggttcgagc gctcggaagt gaaggatcgc cacctggtgg
     1801 ccaaaaggct gaccgagcac gtgcaggata aaagcaagct gcccatcctc atcttcccgg
     1861 agggaacctg catcaacaat acgtctgtga tgatgttcaa aaagggaagt ttcgaaattg
     1921 gagccacagt ttaccccgtt gcgatcaagt atgaccccca gttcggtgat gctttctgga
     1981 acagcagcaa gtacgggatg gtgacgtacc tgctgaggat gatgaccagc tgggccatcg
     2041 tctgcagcgt gtggtacctg cctcccatga cgagagaggc cgaggaagat gccgtccagt
     2101 tcgcaaacag ggtgaagtcc gccattgcca ggcagggagg ccttgtggac ctgctgtggg
     2161 acggtggtct gaagcgggag aaggtgaagg acacgttcaa ggaggaacag cagaagctgt
     2221 acagcaagat gatcgttggc aaccacgagg accggagccg gtcctgagcc cgcgctgccg
     2281 cccggccacc tccgcccggg acgcaggcgc cacgggccaa tgcgcacaca ggactcttcg
     2341 ggcttcttcg agccacccgg gctgctccca ggacgagctg ccttcttgtt ccttctctgc
     2401 cgagtcggcg ggaggagtgc cattaaagtc ccctcgccac cgtgcccgtg cggcctgagt
     2461 gctgggcgag agcctgccat ccccactcgg gacccggggt gcggtctgtc cccgagaccc
     2521 gcctgcgggt ggggacctca ccaggccagg cccgccccga ggaaggcgca gcctcggggc
     2581 cccgcagact cgagaagaga acatgtggtc tgcaggggcc ctcggcagac tgacggtccc
     2641 cggcctgggc cgctggctac ggggccgggc gggcacgggg accggtcctc ccgctccggc
     2701 cgcactctgc cagctcggcc tcggctgccc cgctgtctcc tgggctgggg gtgtggcgac
     2761 acctacctca ccgggttgct gtggcagctc acgcgctacc acgaggggag gcctgtcagc
     2821 tcagcgttgc ggctccaggg cccagggtgg ggcgggacga ggggagctgg agctgcccac
     2881 ggggctccag gtttgtttct gtgagtaaat aaaattgtct tcgatggtga ctg
//
LOCUS       XM_032618209            2119 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycerol-3-phosphate acyltransferase 4
            (GPAT4), transcript variant X3, mRNA.
ACCESSION   XM_032618209
VERSION     XM_032618209.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2119
                     /gene="GPAT4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746664"
     CDS             449..1453
                     /gene="GPAT4"
                     /codon_start=1
                     /product="glycerol-3-phosphate acyltransferase 4 isoform
                     X2"
                     /protein_id="XP_032474100.1"
                     /db_xref="GeneID:116746664"
                     /translation="METIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGL
                     GVLIRYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFKEFLSKHVHLMCYRICVRA
                     LTAIITYHDRKNRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQRAMV
                     KACPHVWFERSEVKDRHLVAKRLTEHVQDKSKLPILIFPEGTCINNTSVMMFKKGSFE
                     IGATVYPVAIKYDPQFGDAFWNSSKYGMVTYLLRMMTSWAIVCSVWYLPPMTREAEED
                     AVQFANRVKSAIARQGGLVDLLWDGGLKREKVKDTFKEEQQKLYSKMIVGNHEDRSRS
                     "
     misc_feature    734..1363
                     /gene="GPAT4"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LPCAT1-like; Region:
                     LPLAT_LPCAT1-like; cd07991"
                     /db_xref="CDD:153253"
     misc_feature    order(824..826,833..835,839..841,881..892,1049..1057)
                     /gene="GPAT4"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153253"
ORIGIN      
        1 tactcccagg ctctctgttc cggccgtcga gtgacgtgaa cttgggaatg gagttggtgc
       61 ccctccccag gccggtgctg ttggagagga ccgtctgagg ccgagctttg ttcgtgggga
      121 ggagggcgct ggcctggcct gcatcctcca ccatgttcct gttactgcct tttgacagcc
      181 tgattgtcag cctcctgggc atctccctga ccgtcctctt caccctcctt ctggttttca
      241 tcatagcccc cgccattttc ggagtctcct ttggtatccg aaagctctac atgaaaactt
      301 tgttaaagat ctttgcggaa tcattgcaaa agatcccacg tcactagaag aagagatcaa
      361 agaaattcgc cggagtggta gcagtaaggc tctggacgac actcgcgagt ttgagctctc
      421 tgacattttc tacttctgcc ggaaagggat ggagaccatt atggacgatg aggtgacaaa
      481 gaggttctcg gcagaggagt tggagtcctg gaacttgctg agcaggacca attataactt
      541 ccagtacatc agccttcggc tcaccgtgct ctggggctta ggagtgctga ttcggtactg
      601 cttcctcctg cccctcagga tagctcttgc tttcacgggg attagcctcc tggtggtagg
      661 cacaacggtg gtgggatacc tgccaaacgg gaggtttaag gagttcctga gtaagcacgt
      721 tcacctaatg tgctatcgca tctgcgtacg agccctgacg gccatcatta cctaccacga
      781 caggaagaac cggcctagaa atggcggcat ctgcgtggcc aatcatacgt ctcccattga
      841 cgtcatcatt ttggccagtg atggctatta cgccatggtg gggcaggtgc acggcggcct
      901 catgggcgtc atccagagag ccatggtgaa ggcctgcccc cacgtctggt tcgagcgctc
      961 ggaagtgaag gatcgccacc tggtggccaa aaggctgacc gagcacgtgc aggataaaag
     1021 caagctgccc atcctcatct tcccggaggg aacctgcatc aacaatacgt ctgtgatgat
     1081 gttcaaaaag ggaagtttcg aaattggagc cacagtttac cccgttgcga tcaagtatga
     1141 cccccagttc ggtgatgctt tctggaacag cagcaagtac gggatggtga cgtacctgct
     1201 gaggatgatg accagctggg ccatcgtctg cagcgtgtgg tacctgcctc ccatgacgag
     1261 agaggccgag gaagatgccg tccagttcgc aaacagggtg aagtccgcca ttgccaggca
     1321 gggaggcctt gtggacctgc tgtgggacgg tggtctgaag cgggagaagg tgaaggacac
     1381 gttcaaggag gaacagcaga agctgtacag caagatgatc gttggcaacc acgaggaccg
     1441 gagccggtcc tgagcccgcg ctgccgcccg gccacctccg cccgggacgc aggcgccacg
     1501 ggccaatgcg cacacaggac tcttcgggct tcttcgagcc acccgggctg ctcccaggac
     1561 gagctgcctt cttgttcctt ctctgccgag tcggcgggag gagtgccatt aaagtcccct
     1621 cgccaccgtg cccgtgcggc ctgagtgctg ggcgagagcc tgccatcccc actcgggacc
     1681 cggggtgcgg tctgtccccg agacccgcct gcgggtgggg acctcaccag gccaggcccg
     1741 ccccgaggaa ggcgcagcct cggggccccg cagactcgag aagagaacat gtggtctgca
     1801 ggggccctcg gcagactgac ggtccccggc ctgggccgct ggctacgggg ccgggcgggc
     1861 acggggaccg gtcctcccgc tccggccgca ctctgccagc tcggcctcgg ctgccccgct
     1921 gtctcctggg ctgggggtgt ggcgacacct acctcaccgg gttgctgtgg cagctcacgc
     1981 gctaccacga ggggaggcct gtcagctcag cgttgcggct ccagggccca gggtggggcg
     2041 ggacgagggg agctggagct gcccacgggg ctccaggttt gtttctgtga gtaaataaaa
     2101 ttgtcttcga tggtgactg
//
LOCUS       XM_032618210            3179 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 3 (TLR3), transcript
            variant X1, mRNA.
ACCESSION   XM_032618210
VERSION     XM_032618210.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3179
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3179
                     /gene="TLR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 mRNAs, 44 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746665"
     CDS             339..3131
                     /gene="TLR3"
                     /codon_start=1
                     /product="toll-like receptor 3 isoform X1"
                     /protein_id="XP_032474101.1"
                     /db_xref="GeneID:116746665"
                     /translation="MITILTSQKSLCLFPFSLILPDIWIMSRDLLYRIYSFWGLLPFW
                     ILCTSSTNKCTVRHEIADCSHLKLTQIPDDLPTNITVLNLTHNQLRRLPPANFTRYSQ
                     LTILDGGFNSISKLEPELCQSLPLLEILNLQHNELSQLSDKTFIFCMNLTELHLMSNS
                     IQKIQSNPFKRLKNLIKLDLAHNGLSSTKLGTQLQLENLQELLLSNNKISALRREELD
                     FLGNSSLKRLELSSNQIKEFSPGCFHAIGKLFGFSLNNAKLSPSLIEELCLELSNTSI
                     QNLSLSNNQLYTTSNTTFVGLKQTNLTMLDLSHNSLSVIGNDSFAWLPRLEYLFLEYN
                     NIQHLSSRSFYGLSNLRYLNLRRSFTKQSISLASLPKIDDFSFQWLKFLEYLNMEDNT
                     FPGIKSNTFTGLTRLRCLSLSNSFSSLRTLTNETFLSLAGSPLLILNLTKNKISKIES
                     GAFSWLGHLNVLDLGLNEIGQELTGQEWRGLENIVEIYLSYNKYLELTSNSFALVPSL
                     QRLMLRRVALKNVNSSPSPFHPLLNLTILDLSNNNIANINDELLKGLEKLEILDLQHN
                     NLARLWKHANPGGPIHFLKGLSHLHILNLESNGFDEVPAEVFKDLRELKSIDLGLNNL
                     NILPPSVFDNQVSLKSLSLQKNLITSVEKNVFRPAFKNLSNLDMSFNPFDCTCESIAW
                     FVTWINNTHTNISELSNRYLCNTPPQYHGFPVMLFDISPCKDSAPFELLFMINTSILL
                     IFILIVLLIHFEGWKISFYWNVSVHRVLGFKEIDRQPEQFEYAAYIIHAYKDRDWVWE
                     HFSPMEEEDHTLRFCLEERDFKAGVLELEAIVNSIRRSRKIIFVITQNLLKDPLCKRF
                     KVHHAVQQAVEQSLDSIILIFLEDIPDYKLNHALCLRRGMFKSHCILNWPVQKERVNA
                     FHHKLQVALGSRNSVH"
     misc_feature    573..644
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    630..>2351
                     /gene="TLR3"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    645..716
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    717..788
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    789..860
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    861..1010
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1011..1163
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1164..1241
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1242..1313
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1314..1379
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1386..1556
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1557..1712
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1713..1787
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1788..1859
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1860..1937
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1938..2009
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2010..2105
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2106..2171
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2178..2249
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    2250..2291
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    2265..>2483
                     /gene="TLR3"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2508..2606
                     /gene="TLR3"
                     /note="Toll-like receptor 3 trans-membrane domain; Region:
                     Tlr3_TMD; pfam17968"
                     /db_xref="CDD:465595"
     misc_feature    2679..3116
                     /gene="TLR3"
                     /note="Toll - interleukin 1 - resistance; Region: TIR;
                     smart00255"
                     /db_xref="CDD:214587"
ORIGIN      
        1 ggcaaggtct taattctttc aactttctct gttgctaaat ctgtgaccct cttaataaaa
       61 cccaagggac tgtacagaag aagaaaaaac aagacatttt taagaaacaa tttaaaatac
      121 ctcttgctga gattgtgatt tttttccttt gcccttctta gaatgtacca aggagaaaag
      181 gaggtttttg gttttttttt tttaaacttt agtttcactt tccagattgc agcaaacttc
      241 ctcacttccc agatgaaaac gactggattt ggactaacga aaaaaggaac ggtcagctgc
      301 cgtcagagta agtgaaggtt ttaggatttt tctggtggat gatcacaatt ctgacgtctc
      361 agaagagtct gtgtcttttt cctttttcac tcatcctgcc tgacatttgg atcatgagca
      421 gggatttgct ttatcgtatc tactcctttt ggggactgtt gcccttctgg atactgtgta
      481 catcttctac caacaaatgt actgttagac atgagatagc tgactgcagt catctgaagt
      541 tgactcaaat acctgatgac ctcccaacaa acataacagt gttgaatctt acccataatc
      601 aactcagaag attaccacct gccaatttta caagatatag ccaacttact atcttggatg
      661 gaggatttaa ctccatctca aagctggagc cagaactgtg ccaaagtctc cctttgttgg
      721 aaattttgaa cctccaacac aatgagctat ctcagctttc tgataaaacc tttatcttct
      781 gcatgaattt gactgaactc catctaatgt ccaactcaat ccagaaaatt caaagtaatc
      841 cctttaaacg cctgaagaat ttaatcaaat tagacctagc tcataatggt ttatcatcta
      901 ctaaattagg aactcagctg caactggaaa acctccaaga gcttctacta tcaaataata
      961 aaatttctgc actaagacgt gaagaacttg atttccttgg caactcttct ttaaaaagat
     1021 tagagttgtc atcaaatcaa ataaaagagt tctctccagg gtgttttcat gcgattggaa
     1081 aattatttgg cttctctctg aacaatgcca aactgagccc cagtctcata gaagagctct
     1141 gcttggaatt atcaaacaca agcattcaga atctgtccct gagcaacaac cagctgtaca
     1201 caaccagcaa cacgactttt gttggactga agcagacaaa tctcacaatg ctcgatcttt
     1261 cccataacag cttaagtgtg attggtaatg attcctttgc ttggcttcca cgtctagaat
     1321 atctcttttt ggagtataat aatatacaac atctgtcttc tcgctctttt tatgggcttt
     1381 ccaatttgag atacctgaat ttgagacgat cttttactaa acaaagcatt tccctggctt
     1441 cacttcccaa gattgatgat ttttcctttc agtggctaaa atttttggag tatctcaata
     1501 tggaagataa cacctttcca ggcataaaaa gcaatacttt cacgggattg acaaggctga
     1561 gatgtttaag tctgtccaac tccttctcaa gtttgcgaac tttaacaaat gaaacgtttt
     1621 tatcacttgc tggttctcct ctgctcatac tcaacctaac caaaaataaa atctcaaaaa
     1681 tagagagtgg tgctttttcg tggttgggcc acctcaatgt acttgacctt ggccttaatg
     1741 aaattgggca agaactcaca ggccaggaat ggagaggtct agaaaatatt gttgaaatct
     1801 acctttccta caacaaatac ctagagctga ctagcaactc ttttgccttg gttccaagcc
     1861 ttcaacgact gatgctccga agggtggccc ttaaaaatgt gaatagctcc ccttcacctt
     1921 ttcaccctct tcttaacctg accatcctgg atctaagcaa caacaacata gccaacataa
     1981 atgatgaact gttgaagggt cttgagaaac tagaaattct ggatttgcag cataacaact
     2041 tagctcgcct ctggaagcat gcaaaccctg gcggtcctat tcattttctg aagggtcttt
     2101 ctcacctcca catccttaac ttagagtcta atggctttga tgaggtccca gcagaagtct
     2161 tcaaggactt acgtgaattg aagagcatcg atttaggatt gaataattta aatatccttc
     2221 cgccatctgt ctttgataat caagtgtcgc taaagtcatt aagccttcag aagaatctca
     2281 taacatctgt tgaaaagaac gttttcaggc cagcattcaa gaacctgagt aatttagata
     2341 tgagctttaa tccattcgat tgtacatgtg aaagcattgc ctggtttgtt acttggatta
     2401 ataataccca taccaacatc tctgaactat caaaccgtta cctctgcaac actccacctc
     2461 aatatcatgg tttcccagtg atgctttttg atatatcacc ctgcaaagac agtgccccat
     2521 ttgaactcct tttcatgata aataccagta tcctattgat ttttatcctt attgtactcc
     2581 tcatccattt tgaaggctgg aagatatctt tttattggaa tgtttcagtg catcgagttc
     2641 ttggtttcaa agaaatagac agacagccag aacagtttga atatgcggca tatataattc
     2701 atgcctataa ggatagggat tgggtctggg aacacttctc ccccatggaa gaagaagatc
     2761 atacactcag attttgtctg gaagaaaggg attttaaggc aggtgtcctt gaacttgaag
     2821 caattgttaa cagcatcaga aggagcagaa aaattatttt tgttataaca cagaatctac
     2881 tgaaagatcc attatgcaaa aggttcaagg tgcaccacgc agttcagcaa gctgttgaac
     2941 aaagtctgga ttccatcata ttgatctttc tcgaggatat tccggattat aaactgaatc
     3001 atgcgctctg tttgcgaaga gggatgttta aatctcactg catcttgaac tggccggttc
     3061 agaaagaacg ggtaaatgcc tttcatcata aattgcaagt agcacttggt tccagaaatt
     3121 cagtacatta aatttattta aagactaaat taaaggagta actttgctaa tttaaaaaa
//
LOCUS       XM_032618211            3149 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus toll like receptor 3 (TLR3), transcript
            variant X2, mRNA.
ACCESSION   XM_032618211
VERSION     XM_032618211.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3149
                     /gene="TLR3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746665"
     CDS             339..3119
                     /gene="TLR3"
                     /codon_start=1
                     /product="toll-like receptor 3 isoform X2"
                     /protein_id="XP_032474102.1"
                     /db_xref="GeneID:116746665"
                     /translation="MITILTSQKSLCLFPFSLILPDIWIMSRDLLYRIYSFWGLLPFW
                     ILCTSSTNKCTVRHEIADCSHLKLTQIPDDLPTNITVLNLTHNQLRRLPPANFTRYSQ
                     LTILDGGFNSISKLEPELCQSLPLLEILNLQHNELSQLSDKTFIFCMNLTELHLMSNS
                     IQKIQSNPFKRLKNLIKLDLAHNGLSSTKLGTQLQLENLQELLLSNNKISALRREELD
                     FLGNSSLKRLELSSNQIKEFSPGCFHAIGKLFGFSLNNAKLSPSLIEELCLELSNTSI
                     QNLSLSNNQLYTTSNTTFVGLKQTNLTMLDLSHNSLSVIGNDSFAWLPRLEYLFLEYN
                     NIQHLSSRSFYGLSNLRYLNLRRSFTKQSISLASLPKIDDFSFQWLKFLEYLNMEDNT
                     FPGIKSNTFTGLTRLRCLSLSNSFSSLRTLTNETFLSLAGSPLLILNLTKNKISKIES
                     GAFSWLGHLNVLDLGLNEIGQELTGQEWRGLENIVEIYLSYNKYLELTSNSFALVPSL
                     QRLMLRRVALKNVNSSPSPFHPLLNLTILDLSNNNIANINDELLKGLEKLEILDLQHN
                     NLARLWKHANPGGPIHFLKGLSHLHILNLESNGFDEVPAEVFKDLRELKSIDLGLNNL
                     NILPPSVFDNQVSLKSLSLQKNLITSVEKNVFRPAFKNLSNLDMSFNPFDCTCESIAW
                     FVTWINNTHTNISELSNRYLCNTPPQYHGFPVMLFDISPCKDSAPFELLFMINTSILL
                     IFILIVLLIHFEGWKISFYWNVSVHRVLGFKEIDRQPEQFEYAAYIIHAYKDRDWVWE
                     HFSPMEEEDHTLRFCLEERDFKAGVLELEAIVNSIRRSRKIIFVITQNLLKDPLCKRF
                     KVHHAVQQAVEQSLDSIILIFLEDIPDYKLNHALCLRRGMFKSHCILNWPVQKERTDT
                     YCGTPVHVPDAE"
     misc_feature    573..644
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    630..>2351
                     /gene="TLR3"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional; Region: PLN00113"
                     /db_xref="CDD:215061"
     misc_feature    645..716
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    717..788
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    789..860
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    861..1010
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1011..1163
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1164..1241
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1242..1313
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1314..1379
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1386..1556
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1557..1712
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1713..1787
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1788..1859
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1860..1937
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1938..2009
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2010..2105
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2106..2171
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2178..2249
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    2250..2291
                     /gene="TLR3"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    2265..>2483
                     /gene="TLR3"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2508..2606
                     /gene="TLR3"
                     /note="Toll-like receptor 3 trans-membrane domain; Region:
                     Tlr3_TMD; pfam17968"
                     /db_xref="CDD:465595"
     misc_feature    2679..3071
                     /gene="TLR3"
                     /note="Toll - interleukin 1 - resistance; Region: TIR;
                     smart00255"
                     /db_xref="CDD:214587"
ORIGIN      
        1 ggcaaggtct taattctttc aactttctct gttgctaaat ctgtgaccct cttaataaaa
       61 cccaagggac tgtacagaag aagaaaaaac aagacatttt taagaaacaa tttaaaatac
      121 ctcttgctga gattgtgatt tttttccttt gcccttctta gaatgtacca aggagaaaag
      181 gaggtttttg gttttttttt tttaaacttt agtttcactt tccagattgc agcaaacttc
      241 ctcacttccc agatgaaaac gactggattt ggactaacga aaaaaggaac ggtcagctgc
      301 cgtcagagta agtgaaggtt ttaggatttt tctggtggat gatcacaatt ctgacgtctc
      361 agaagagtct gtgtcttttt cctttttcac tcatcctgcc tgacatttgg atcatgagca
      421 gggatttgct ttatcgtatc tactcctttt ggggactgtt gcccttctgg atactgtgta
      481 catcttctac caacaaatgt actgttagac atgagatagc tgactgcagt catctgaagt
      541 tgactcaaat acctgatgac ctcccaacaa acataacagt gttgaatctt acccataatc
      601 aactcagaag attaccacct gccaatttta caagatatag ccaacttact atcttggatg
      661 gaggatttaa ctccatctca aagctggagc cagaactgtg ccaaagtctc cctttgttgg
      721 aaattttgaa cctccaacac aatgagctat ctcagctttc tgataaaacc tttatcttct
      781 gcatgaattt gactgaactc catctaatgt ccaactcaat ccagaaaatt caaagtaatc
      841 cctttaaacg cctgaagaat ttaatcaaat tagacctagc tcataatggt ttatcatcta
      901 ctaaattagg aactcagctg caactggaaa acctccaaga gcttctacta tcaaataata
      961 aaatttctgc actaagacgt gaagaacttg atttccttgg caactcttct ttaaaaagat
     1021 tagagttgtc atcaaatcaa ataaaagagt tctctccagg gtgttttcat gcgattggaa
     1081 aattatttgg cttctctctg aacaatgcca aactgagccc cagtctcata gaagagctct
     1141 gcttggaatt atcaaacaca agcattcaga atctgtccct gagcaacaac cagctgtaca
     1201 caaccagcaa cacgactttt gttggactga agcagacaaa tctcacaatg ctcgatcttt
     1261 cccataacag cttaagtgtg attggtaatg attcctttgc ttggcttcca cgtctagaat
     1321 atctcttttt ggagtataat aatatacaac atctgtcttc tcgctctttt tatgggcttt
     1381 ccaatttgag atacctgaat ttgagacgat cttttactaa acaaagcatt tccctggctt
     1441 cacttcccaa gattgatgat ttttcctttc agtggctaaa atttttggag tatctcaata
     1501 tggaagataa cacctttcca ggcataaaaa gcaatacttt cacgggattg acaaggctga
     1561 gatgtttaag tctgtccaac tccttctcaa gtttgcgaac tttaacaaat gaaacgtttt
     1621 tatcacttgc tggttctcct ctgctcatac tcaacctaac caaaaataaa atctcaaaaa
     1681 tagagagtgg tgctttttcg tggttgggcc acctcaatgt acttgacctt ggccttaatg
     1741 aaattgggca agaactcaca ggccaggaat ggagaggtct agaaaatatt gttgaaatct
     1801 acctttccta caacaaatac ctagagctga ctagcaactc ttttgccttg gttccaagcc
     1861 ttcaacgact gatgctccga agggtggccc ttaaaaatgt gaatagctcc ccttcacctt
     1921 ttcaccctct tcttaacctg accatcctgg atctaagcaa caacaacata gccaacataa
     1981 atgatgaact gttgaagggt cttgagaaac tagaaattct ggatttgcag cataacaact
     2041 tagctcgcct ctggaagcat gcaaaccctg gcggtcctat tcattttctg aagggtcttt
     2101 ctcacctcca catccttaac ttagagtcta atggctttga tgaggtccca gcagaagtct
     2161 tcaaggactt acgtgaattg aagagcatcg atttaggatt gaataattta aatatccttc
     2221 cgccatctgt ctttgataat caagtgtcgc taaagtcatt aagccttcag aagaatctca
     2281 taacatctgt tgaaaagaac gttttcaggc cagcattcaa gaacctgagt aatttagata
     2341 tgagctttaa tccattcgat tgtacatgtg aaagcattgc ctggtttgtt acttggatta
     2401 ataataccca taccaacatc tctgaactat caaaccgtta cctctgcaac actccacctc
     2461 aatatcatgg tttcccagtg atgctttttg atatatcacc ctgcaaagac agtgccccat
     2521 ttgaactcct tttcatgata aataccagta tcctattgat ttttatcctt attgtactcc
     2581 tcatccattt tgaaggctgg aagatatctt tttattggaa tgtttcagtg catcgagttc
     2641 ttggtttcaa agaaatagac agacagccag aacagtttga atatgcggca tatataattc
     2701 atgcctataa ggatagggat tgggtctggg aacacttctc ccccatggaa gaagaagatc
     2761 atacactcag attttgtctg gaagaaaggg attttaaggc aggtgtcctt gaacttgaag
     2821 caattgttaa cagcatcaga aggagcagaa aaattatttt tgttataaca cagaatctac
     2881 tgaaagatcc attatgcaaa aggttcaagg tgcaccacgc agttcagcaa gctgttgaac
     2941 aaagtctgga ttccatcata ttgatctttc tcgaggatat tccggattat aaactgaatc
     3001 atgcgctctg tttgcgaaga gggatgttta aatctcactg catcttgaac tggccggttc
     3061 agaaagaacg gactgacacg tattgtggaa caccagttca tgtgcccgat gcagagtaag
     3121 gccaaacaat ctgcaacgtt ggagtctgg
//
LOCUS       XM_032618212            2473 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytochrome P450 4V2 (LOC116746666), mRNA.
ACCESSION   XM_032618212
VERSION     XM_032618212.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2473
                     /gene="LOC116746666"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746666"
     CDS             251..2209
                     /gene="LOC116746666"
                     /codon_start=1
                     /product="cytochrome P450 4V2"
                     /protein_id="XP_032474103.1"
                     /db_xref="GeneID:116746666"
                     /translation="MLVSRTFVFCSKQTKRPVTAAWAPAVPDRGASETPTLSREAGLP
                     PLQGGQACAHLRPDGEVSGAGDAPFCSRSAPHPAGAARLFRGQETPPGAGALDLPGLH
                     RARRPEHPAPRSRSLSPGAERPAGAMLALWLLSFGQRLLLWGGLCAVSLAGAILTLHL
                     LRMVASYAWTWQQMRAVPTLEGAYPFLGHALMLKPDARDFFQQMIQYTEEYRHLPLVK
                     LWLGPVPLVFLYNAENVEVILTSSKHIDKSYMYKFLEPWLGLGLLTSTGNRWRSRRKM
                     LTPTFHFTILEDFLDVMNEQANILVNKLEKHVDQEAFNCFFYITLCALDIICETAMGK
                     NIGAQSNDDSEYVQAVYRMSDSIHQRMKMPWLWLDLLFLIFKDGWEHKRSLKILHDFT
                     KNVITERANEMKRHEEGRSNDKDSPPRNNKRRGFLDLLLNVTDDQGNKLSYEEIREEV
                     DTFMFEGHDTTAAAINLSLYLLGSYPEVQQKVDNELEEVFGRSDRPPTLDDLRKLKYL
                     ECVVKESLRLFPSVPFFARNLNEDCEVAGYKIVKGSQVIIMPYALHRDPRYFPNPEEF
                     KPERFFPENSKGRHSYAYVPFSAGPRNCIGQKFAMMEEKTILSCILRHFWVESNQKRE
                     ELGLAGELILRPSNGIWIKLKRRNTNES"
     misc_feature    <305..>643
                     /gene="LOC116746666"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK07003"
                     /db_xref="CDD:235906"
     misc_feature    857..2176
                     /gene="LOC116746666"
                     /note="cytochrome P450 family 4, subfamily V; Region:
                     CYP4V; cd20680"
                     /db_xref="CDD:410773"
     misc_feature    order(983..985,1034..1039,1058..1060,1070..1072,
                     1091..1093,1607..1609,1616..1621,1628..1630,1811..1813,
                     1823..1825,2006..2014,2024..2038,2045..2050,2060..2062)
                     /gene="LOC116746666"
                     /note="heme binding site [chemical binding]; other site"
                     /db_xref="CDD:410773"
     misc_feature    order(1037..1039,1613..1618,1628..1630,1820..1822,
                     1826..1828)
                     /gene="LOC116746666"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:410773"
ORIGIN      
        1 gtacccagcc gggaaaaaac gagctccaga ggctgagttt caaaccagat acttatttcc
       61 atttaaaaat atcctgcgca ctctagcctg agtcgtcccg ttcccagcag aggggggcct
      121 ataagccaaa gctcagcccc ctctggcccc ggagtgcctc tccgtcacta agctgccttc
      181 catttcacct tcagcatcct ccccgctcca cccactaacg tgccaccatt tacatcagca
      241 cagcccacaa atgctcgttt cccgaacttt cgttttctgc tcgaagcaaa caaagaggcc
      301 ggttacggcg gcttgggccc ccgcagtgcc tgatcgagga gcctcggaga ctccaacctt
      361 gtcgcgagaa gcagggctgc ccccgcttca gggcggccag gcctgtgccc acctccggcc
      421 ggacggggaa gtgagcgggg ccggcgacgc ccccttctgc tcccggagcg ccccgcaccc
      481 tgcgggcgcc gcccgacttt tcagaggcca ggaaactccg ccaggggctg gcgcccttga
      541 cctcccgggg ctgcaccgcg cccgccgccc cgagcatccc gccccgcggt cccgcagcct
      601 cagtccaggt gcagagcggc ccgcaggcgc gatgctggcg ctgtggctgc tgagcttcgg
      661 gcagaggttg ctgctctggg gcgggttgtg cgcggtctcc ctggcgggcg ccatcctcac
      721 cctgcacctc ctgcggatgg tggcgagcta cgcgtggaca tggcagcaga tgcgtgcggt
      781 cccaaccttg gagggcgcct accccttcct gggacacgcg ctgatgttaa agccggacgc
      841 gagagatttt tttcagcaga tgattcagta cactgaagaa taccgacacc tgccactggt
      901 gaaactctgg ctcgggcccg tacctctggt gttcctttat aacgcagaaa atgtggaggt
      961 aattttaact agttcaaagc acattgacaa atcctatatg tacaagtttc tagaaccgtg
     1021 gcttggccta ggacttctta caagtactgg aaacaggtgg cgctctagga gaaaaatgtt
     1081 aacacccact tttcatttta caattctgga agatttctta gatgtcatga atgaacaagc
     1141 aaatatattg gttaataagc ttgaaaaaca tgttgaccaa gaagcattta actgcttttt
     1201 ttacatcact ctttgtgcct tagatataat ctgtgaaaca gctatgggga agaacattgg
     1261 tgctcaaagc aacgatgatt ccgagtatgt tcaagcagtt tataggatga gtgattcaat
     1321 acatcaaaga atgaagatgc cctggctctg gcttgacctt ttgttcctta tatttaaaga
     1381 tggatgggaa cacaaaagga gcctaaaaat cctacatgat tttaccaaaa atgtcatcac
     1441 tgaacgggcc aatgaaatga agagacatga agaaggcaga agtaatgaca aggactctcc
     1501 tccacgcaat aataaacgca ggggttttct cgacttgctt ttaaatgtga ctgatgacca
     1561 agggaacaag ctgagttatg aagagattcg agaagaagtt gacaccttta tgtttgaggg
     1621 tcacgatacg accgcagctg caataaactt gtccttatat ctcctgggtt cgtatccaga
     1681 agtccagcaa aaagtggaca acgaactgga ggaagtgttt gggagatctg atcgtcctcc
     1741 taccttagat gacctgagga aacttaaata tctggaatgt gttgttaaag agagccttcg
     1801 cctttttcct tctgttcctt tctttgcccg taatcttaat gaagactgtg aagttgcggg
     1861 ctacaaaatc gtgaaaggct ctcaagtaat catcatgccc tatgcactgc acagagatcc
     1921 aagatacttc cccaatcctg aggagttcaa gccagaacgg ttctttcccg agaattcgaa
     1981 aggacgtcat tcatacgcat atgtgccctt ctctgctgga ccccgaaact gtataggtca
     2041 aaagtttgcc atgatggaag aaaagaccat tctttcctgc atcctgaggc atttttgggt
     2101 agaatccaac caaaaaagag aagaacttgg tctggcagga gaactgattc ttcgtccaag
     2161 taacggcatc tggatcaagt tgaagaggag aaacacaaat gaatcctaac tatgctactg
     2221 ggctgctctc ttaccacaaa aaggtctttc tttaaaggaa gctttgcatt tacaatttgt
     2281 aaatcatgaa ctcaatattc ttaatcccta aacctaattt ttttcttgtc cccatttacc
     2341 ttggggtcaa gtctaccaaa gcgcgagttt tcatatctcc atcaccatca tagctctgac
     2401 ccctggtctt gatcccaaaa gtaaactgat gactgtaccc aaataaacac ataaaagctt
     2461 ctcagcagag gga
//
LOCUS       XM_032618213            2833 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coagulation factor XI (F11), mRNA.
ACCESSION   XM_032618213
VERSION     XM_032618213.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2833
                     /gene="F11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 16 Proteins, and 14%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746668"
     CDS             296..2212
                     /gene="F11"
                     /codon_start=1
                     /product="coagulation factor XI"
                     /protein_id="XP_032474104.1"
                     /db_xref="GeneID:116746668"
                     /translation="MTLLYQMVHFILFASVSGECVTKLFQDAYFKGGDITVVFTPNAK
                     HCQIVCTHHPRCLLFTFMAESSSEDPTKWFTCILKDSVAETLPMVNMTGAISGYSSKQ
                     CSDQISACNKDIYVDLYMKGLNHNSSITKSAQECQERCTNDRHCHFFTFATEHFPSIK
                     YRNICLLKYTQTGMPTNITKLSEVVSGFSLKPCALSNLACIRDIFPRTMFADSNIDSV
                     MAPDAFVCRSICTHHPSCLFFTFFSQEWPTISERNLCLLKTSTSGLPSARIRKNKALS
                     GFSLQNCRHSVPVFCHSSFYRDTDFLGEELDIVNVDGHEACQKTCTNSIRCQFFTYSP
                     SQEPSNGGKGKCYLKLSANGSPTKILHGRGNISGYTLRLCKMDNACTTKIKPRIVGGT
                     KSVLGEWPWQITLYITSPTQRHLCGGSIIGNQWILTAAHCFSEVESPKALRVYSGILN
                     QEEIKEDTSFFGVQEIIIHDQYEMAESGYDIALLKLEMTMNYTDSQRPICLPSKGDRN
                     VTYTECWVTGWGYQKLRDKILNTLQKARVPLVTNEECQAGYRGHKITNKMVCAGYKEG
                     GKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCGQRERPGVYTNVVEYVDWILEKTQS
                     SLKESPDAIWLPEG"
     misc_feature    353..604
                     /gene="F11"
                     /note="APPLE domain; Region: APPLE; smart00223"
                     /db_xref="CDD:128519"
     misc_feature    order(401..403,407..409,440..442)
                     /gene="F11"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238533"
     misc_feature    623..874
                     /gene="F11"
                     /note="APPLE domain; Region: APPLE; smart00223"
                     /db_xref="CDD:128519"
     misc_feature    order(671..673,677..679,710..712)
                     /gene="F11"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238533"
     misc_feature    893..1144
                     /gene="F11"
                     /note="APPLE domain; Region: APPLE; smart00223"
                     /db_xref="CDD:128519"
     misc_feature    order(941..943,947..949,980..982)
                     /gene="F11"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238533"
     misc_feature    1166..1417
                     /gene="F11"
                     /note="APPLE domain; Region: APPLE; smart00223"
                     /db_xref="CDD:128519"
     misc_feature    order(1214..1216,1220..1222,1253..1255)
                     /gene="F11"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238533"
     misc_feature    1457..2149
                     /gene="F11"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...; Region:
                     Tryp_SPc; cd00190"
                     /db_xref="CDD:238113"
     misc_feature    1457..1459
                     /gene="F11"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     misc_feature    order(1586..1588,1733..1735,2018..2020)
                     /gene="F11"
                     /note="active site"
                     /db_xref="CDD:238113"
     misc_feature    order(2000..2002,2075..2077,2081..2083)
                     /gene="F11"
                     /note="substrate binding sites [chemical binding]; other
                     site"
                     /db_xref="CDD:238113"
ORIGIN      
        1 aagcttctct gtatgtcact tgtttgaatg catagtaaaa taagagagaa aaaattaatg
       61 tattcaaaaa gcaagcacct ctaccaaggt atgtgtttga tatgcaaaga ttttcaggac
      121 tttcacaggc atgctgtaca aagagacgat gttacatcac actgggaacc agtaaaagta
      181 aatattaaag ttaagtgaac attacctgca aaatctcatt tagaggagga tgaaaaccat
      241 tttggaaaaa gaaagacatt cttattaaga attgcagcaa acaaggagtt tcaggatgac
      301 tttattatat caaatggtac atttcatttt atttgcctca gtttctggtg agtgtgtgac
      361 caagctgttc caagatgcct actttaaagg aggagacatt actgttgttt tcacaccaaa
      421 tgccaagcac tgccaaatag tctgcaccca ccatccaagg tgtttgctct tcacttttat
      481 ggctgaatca tcatctgaag atcctaccaa gtggtttact tgcatcctga aagacagtgt
      541 tgcagaaaca ctgccgatgg tcaatatgac gggagcaatt tctggatatt cttccaagca
      601 atgctcagac caaataagtg cttgcaacaa agatatttat gtggacctat atatgaaggg
      661 cctgaaccat aacagctcta ttaccaagag tgctcaggaa tgccaagaga ggtgtacgaa
      721 tgacaggcac tgtcactttt ttacatttgc cacagagcac tttccaagca taaagtatcg
      781 taacatttgt ctgttgaagt acacccaaac ggggatgcca accaacataa caaagctcag
      841 tgaagtggtg tctggatttt cactgaagcc ctgtgcgctt tctaatctgg cttgtattag
      901 ggacattttc cctagaacga tgtttgcaga cagtaacatt gacagtgtca tggctccaga
      961 tgcttttgtc tgtcgcagca tttgtactca ccatcccagt tgtttgttct ttaccttctt
     1021 ttctcaagaa tggccaacaa tatctgaaag aaatctgtgt ctacttaaaa cgtctacaag
     1081 tgggttgcca agcgcacgca ttagaaagaa caaagctctt tctggtttta gtctacaaaa
     1141 ctgccggcac agtgtcccag tgttctgcca ttcttcattc taccgtgaca ctgatttctt
     1201 gggagaagaa ctggacattg ttaacgtgga cgggcacgaa gcctgccaga aaacatgtac
     1261 caacagcatc cgctgtcaat tttttaccta ttctccatct caagaacctt ccaacggagg
     1321 gaagggtaaa tgctacttaa aactttctgc aaatggatct ccaactaaaa tacttcatgg
     1381 gagaggaaac atctctggat atacgttaag gttatgtaaa atggataatg catgtacaac
     1441 gaaaatcaag cccagaattg ttggaggaac caagtctgtt cttggagagt ggccatggca
     1501 gataactttg tacatcacat cacccaccca gagacacctg tgtggaggct ccatcatcgg
     1561 aaaccagtgg atattaacag ctgctcattg tttcagcgag gtagagtcac ctaaagcttt
     1621 gcgtgtctat agtggcattt taaaccaaga agaaataaaa gaggatacat ctttctttgg
     1681 ggttcaagaa ataataattc atgatcagta tgaaatggca gaaagtggat atgatatcgc
     1741 cttgttgaaa ctggaaatga caatgaatta cacagattct caacgaccca tctgcctacc
     1801 ttccaaagga gatagaaatg tgacgtatac tgagtgctgg gtgactggat gggggtacca
     1861 aaaattaaga gacaaaatac taaatactct ccagaaagcc cgggtaccct tggtgacaaa
     1921 tgaagaatgc caggcaggat acagagggca taaaataact aataagatgg tctgtgcagg
     1981 ctacaaagaa ggagggaagg atgcctgcaa gggagattcg gggggccccc tgtcttgtaa
     2041 gcacaacgag gtctggcact tggtaggcat cacaagctgg ggcgaaggct gcggccaaag
     2101 ggagcggcca ggtgtttaca ccaacgtggt cgagtacgtg gactggattt tggagaaaac
     2161 gcaaagcagc ttgaaagagt ccccagatgc catttggctc cctgaagggt aagccaggtt
     2221 attccctgga agagggtttg gatttcaccc aggaagacac tgcaccatca ttttcctcca
     2281 caggctacaa ttctgagact gtaacagatt gaaggggctt ggtattggta aaaacacacc
     2341 aaaactgtca ttctcaaaac ccccagttcc gccatcatca gagggcgatc agcacccagg
     2401 ctcttgcttg ctggttgcac ctttcctgag ccaaacgaat actataagat taagatattt
     2461 gaagatgaaa acatacccag atagaccaga aaagaatcag gtagtggcac caaaggatcg
     2521 gggagaactg ctcaaagaaa ccactgtaaa aagatttgtt aaatgaaaaa tgagaactgg
     2581 agaaaatgga aacaagggca gtcaccatca aatcgcaaga ctctgggctc tgcgtacaca
     2641 cacacatctc ttttgtaaag aaagaacttg actgaatttg atggcacgtt ttcagaataa
     2701 tcaaaaattc ctgtcatgtc attttttagt attttttaag ttagtctggg tagagacaag
     2761 ctatgagtga gtgtgaatgt gggttccaaa atttctgtat gggaaaggat taaaagcagc
     2821 aattcacccg gaa
//
LOCUS       XM_032618214            2734 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 149
            member A (FAM149A), mRNA.
ACCESSION   XM_032618214
VERSION     XM_032618214.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-814               VOSU01000013.1     14428814-14429627
            815-925             VOSU01000013.1     14439907-14440017
            926-1064            VOSU01000013.1     14440302-14440440
            1065-1207           VOSU01000013.1     14442680-14442822
            1208-1333           VOSU01000013.1     14444148-14444273
            1334-1504           VOSU01000013.1     14444943-14445113
            1505-1695           VOSU01000013.1     14445697-14445887
            1696-1850           VOSU01000013.1     14447161-14447315
            1851-1954           VOSU01000013.1     14450793-14450896
            1955-2164           VOSU01000013.1     14451367-14451576
            2165-2285           VOSU01000013.1     14454335-14454455
            2286-2387           VOSU01000013.1     14455679-14455780
            2388-2388           "N"                1-1
            2389-2418           VOSU01000013.1     14455781-14455810
            2419-2493           VOSU01000013.1     14455897-14455971
            2494-2734           VOSU01000013.1     14458499-14458739
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2734
                     /gene="FAM149A"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 Proteins, and 95% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746669"
     CDS             129..2567
                     /gene="FAM149A"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein FAM149A"
                     /protein_id="XP_032474105.1"
                     /db_xref="GeneID:116746669"
                     /translation="MKVAVLDLGSLFAKIFKTSTAPAAVPSPVASSSHSRGAATAGPA
                     GIGTGTWLGTAPPLTLFPALAPDSRSGSRRAPALQQPTPAPLRPLLAASHRRVSVASR
                     TGEAGGTPLWLPSSPRAAKVRSSTPPLPAAPSSGVCGAAGSPAPLVAVARPPPGPGGV
                     LAALPSIGGSAGSGSVTASARNPRPPGPGEREPGARVPPGPGPETLFFTLPDLGEEWA
                     SDSDSEDGREARGLPEGSGKQSFAVKSKDPLPTHFTRNVQKAIDKYTRESVSSFSSNG
                     SPVPTEAPSSWSGSGTHRSTTGLSTERSSIYSWRDDEFDKANAQKVQQLFWEVEEMLF
                     EGKVSPQTQNLRAECSEWARRSLHLRVLGRQLVLPTDEGVQHFQGSKPASAVHRPFSD
                     NCEPSSNIRELCISGSQIVPAALSALTLPGPVGTGIADLTACSSLEEEVYDVDGKIEE
                     YFAFDRKEDDKDCLEQNPAHHHRTWHKHGLPPVSPHDCVGDAVAAEVFDHVWTAVVEI
                     LEKLIRKNWEVTLTEGKKQKEKLKVAENKSPPMVISCINADVSSVPPSRSSETRSVSL
                     ASHLNPPQIHRFSNNFYSDLNGVMTIKAKPLQQRPTYFTDRTQSEQEDRSLGLGAGGL
                     ASAQHRLARILEARGLQTSAKKTPAYRRLPSLTSESQRIKIPSVYSDEVLRGTKLQTG
                     VDRTVPPPVQTSRSRLPPIGSETGEQNMAVPGWRPVSLRGRHPQKRVPSTVPVRVEGS
                     PLRERSPATEQVSXPSTSHTFWVDTPRKGSLTLREFAGHTWTGQGFLTGSQFPPKSFQ
                     RTTLTFRKRFQVAC"
     misc_feature    <189..737
                     /gene="FAM149A"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated; Region: PRK07764"
                     /db_xref="CDD:236090"
     misc_feature    1122..1319
                     /gene="FAM149A"
                     /note="Protein of unknown function (DUF3719); Region:
                     DUF3719; pfam12516"
                     /db_xref="CDD:463617"
ORIGIN      
        1 cccccgtccc cgccctgggc cgcctcgtcg ccatccctac gggcggcggt ggatggagcc
       61 ccgcagcccg gctctccgcg ggtttgaggt tcgggcagca gccaggacag catttccaag
      121 gccaggacat gaaggtcgct gtgttggacc ttgggtctct ctttgccaaa atcttcaaga
      181 cctctacggc gcccgcggcg gttccctcgc cggtcgcctc ctccagccac tcgcgaggcg
      241 cagccaccgc agggccggcg ggcatcggga cgggcacctg gcttggcacg gccccgccct
      301 tgaccctctt tccagccctg gcgcccgact cccgctccgg ttcgcggagg gcgccagccc
      361 tgcagcagcc gacgcccgcc ccgctccgtc ctctgctcgc cgcctcccac cgccgggttt
      421 cggtcgcgag ccgcacggga gaagcgggag ggacgcccct ctggctgccc agtagcccga
      481 gagcagccaa agtccggtcc tcgaccccgc ctctgcccgc ggccccctcc agcggcgtct
      541 gcggcgcagc cggctcccca gcccccctgg tggccgtggc gcggccgccc ccgggccctg
      601 gcggggtctt ggcggcgctg ccgtccatcg ggggctccgc gggcagcggc agtgtgaccg
      661 cgagcgcacg gaaccctcgc ccgcccggcc ccggggagcg agagcccggc gctcgggtgc
      721 cacccgggcc tggccccgag accctgttct tcaccctgcc ggacctcggc gaggagtggg
      781 cctcggacag cgactcggag gacggccgag aagcaagagg actgccagaa ggatctggaa
      841 agcagagttt tgctgtgaaa agcaaagatc ctttacctac acattttaca agaaatgtac
      901 agaaagccat tgataaatat acccgtgaat ccgtgtcatc gttttcatca aatggaagcc
      961 ccgtgcccac agaagcgccc agctcctggt ctgggtccgg gacacaccgt tcaaccacag
     1021 gcttatcaac cgagaggagc tccatttact cttggagaga tgatgagttt gacaaagcca
     1081 atgcacagaa agtacagcag ttattctggg aggtcgagga aatgttattt gaagggaaag
     1141 taagccctca gacccagaat ctacgggctg aatgcagtga gtgggcaaga aggtccctcc
     1201 atctgagagt attaggaaga cagcttgtcc tgcccactga tgaaggggtc cagcatttcc
     1261 agggcagcaa acctgcttct gccgtccaca gacccttctc tgacaactgt gaacccagca
     1321 gcaacatcag agagctgtgc atctctggct ctcaaatagt cccggcggca ctctcagccc
     1381 tcaccctgcc aggtcctgtt ggcacaggga ttgcggacct cacagcatgt tcatccttgg
     1441 aagaagaggt ttatgatgtg gatggaaaga ttgaagagta tttcgctttt gacagaaaag
     1501 aagatgacaa ggactgtctt gaacaaaacc cagctcatca ccacaggacg tggcataagc
     1561 acggacttcc tcctgtatcc ccgcatgact gtgtcggaga cgcggtggct gcagaagtgt
     1621 ttgaccacgt ctggacagct gtggtggaaa tactggaaaa gctgattaga aaaaactggg
     1681 aagttacact cacagaagga aaaaaacaga aagaaaaatt gaaagtagcc gagaataaat
     1741 ctccacctat ggtcatttcc tgtattaatg ctgatgtgtc cagtgttccc ccgtccagaa
     1801 gttctgaaac tcgaagtgta tccctggctt ctcatcttaa cccacctcag attcatcgct
     1861 tctccaataa tttttatagt gacttgaatg gtgtgatgac aattaaagca aaaccacttc
     1921 agcagagacc tacttatttt acagatagaa cacagagtga gcaagaggac agatcactgg
     1981 gtttaggggc cggtggtctt gcctcggccc agcaccgtct ggcaaggatc ttggaggctc
     2041 gcggactaca gacttctgca aagaaaacac cggcatacag gaggctgcct tctcttacct
     2101 cagaatcaca gagaataaaa atccccagcg tgtacagtga tgaagttctt aggggaacga
     2161 agctgcaaac tggcgtggac cgcacggtcc ccccaccagt tcagacctca aggagcaggt
     2221 tgccaccaat aggctcagag actggggagc agaatatggc agttcccgga tggcgtcctg
     2281 tttctctcag aggaaggcat ccacaaaaac gtgtgccgag cacagtacct gtccgtgtag
     2341 aaggatcacc ccttcgagaa cgatctccgg ccacggaaca ggtttcanag cccagcacat
     2401 cccatacatt ttgggtcgat acaccccgca aaggttcatt gacactgagg gaatttgctg
     2461 gtcacacatg gacaggtcaa ggttttttga caggttcaca atttccacct aaatcttttc
     2521 agaggacaac tctgactttc agaaagagat tccaagtggc gtgttgatgt gacttcacca
     2581 ggattgcaac acctgctgaa gctttcaaag cctcgttaca ccatttatca cttgaaaaat
     2641 agaagaagta ttgttatata tctgtctgac agtctgagat gttcgactac ctgacagaaa
     2701 tgcaaacaaa taaacaactt aattttgaac cctt
//
LOCUS       XM_032618215            6374 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X1, mRNA.
ACCESSION   XM_032618215
VERSION     XM_032618215.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6374
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6374
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746670"
     CDS             413..4336
                     /gene="WDR17"
                     /codon_start=1
                     /product="WD repeat-containing protein 17 isoform X1"
                     /protein_id="XP_032474106.1"
                     /db_xref="GeneID:116746670"
                     /translation="MAWMTYISHWFEQDDCYEGLQRANMSQVRQVGLLAAGCQPWNKD
                     VCVANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASG
                     STDNFVIIWNVAEQKVIAKLDNTKGTPASLSWCWNADDTVAFASQRGPLFLWTISGPD
                     SGVTVHKEAHSFLSDICIFRWHTQKKGKVVFGHIDGSLSIFQPGSKSQKHVLRPESLE
                     GTDAEDPVTALEWDPLSTDYLLVANLHRGIRLVDSESLCCITTFNFPGAVASVQCLAW
                     VPGAPGMFITGDSQVGVLRVWNVSRATPVDNFKLKKTGFHCLHVLNSPPRKKFSIQSP
                     TKNHYTSSTSEAVPPPTLTQYQAFSVPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGH
                     VETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLN
                     CIAGATSRNGAFIWDIKKGKIVQRFNEHGKNGIFCIAWSHKDSKRIATCSGDGYCIIR
                     TVDGKVLHKYKHPAAVFGCDWSQNNRDMIATGCEDKNVRVYYVATSSDQPLKVFSGHT
                     EKVFHVKWSPLREGILCSGSDDGSVRIWDYTKDACINVLRGHTAPVRGLMWNTEIPYL
                     LISGSWDYTIKVWDTREGACLDTVYDHGADVYGLACHPRRPFTMASCSRDSTVRLWSL
                     TPLITPLQINILADRSWEEIIGNTDCAVEQGMPPLLCGKVSRDIKQEVEKLSGNPRVK
                     KLRWFSECLSPPGGSDNLWDLVAVIKGQDDSLLPQNYCKGIMHLKHLITFRTSEAQEL
                     TTVKMSKFGGGIGVPTKEERLKEAAEIHLRLGQIRRYCELMVELGEWDKALSVAPGVS
                     VKYWKKLMQRRADQLIQEDKDDVIPYCIATGDVKKLVHFFMSRGQLKEALLVAQAACE
                     GNMQTFHVSTPKGSSYSDDIYKEDFNELLQEACRELAEWYFQDGRAVLAACCHLAVDN
                     IELAMAYLIRGNELELAVCVGTVLGELAGPATHYALELLARKCMMIPTWNLAADLLLM
                     TPDSELQLVKLCAFYPGCIEEINDLHEKCKLPTVEECMQLAETAHADGNIFETIKYYL
                     LSQEPEKALPIGIDFIKGSISSSNWTLDTIYPVLDLLSYVRTEKLLLHTCTEARNELL
                     ILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRKVSVPIKIEHLSEELDAWRACTQS
                     INRSSEESPYTSPSDSQRMVYATLLKRLKEEPLRGIIGPDYVTGSNLPSHSDIHISCF
                     TGLKIQGPVFFLEDGKSTISLNDALMWAKVNPFSPLGTGIRLNPF"
     misc_feature    635..1678
                     /gene="WDR17"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(656..658,713..715,725..727,743..748,782..787,
                     842..844,854..856,872..877,923..928,983..985,995..997,
                     1013..1018,1076..1078,1130..1132,1145..1147,1163..1168,
                     1208..1213,1265..1267,1277..1279,1301..1306,1379..1384,
                     1508..1510,1523..1525,1541..1546,1583..1588,1643..1645,
                     1655..1657,1673..1678)
                     /gene="WDR17"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    668..784
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    800..919
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    938..1069
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1091..1201
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1223..1378
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1481..2461
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1481..1585
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1598..1714
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1730..1843
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1859..1966
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1985..2101
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2117..2230
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2246..2359
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2375..2452
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 tccgcgccct tcagaccccg cggcccggcc gcgcagcctc ggagctcgcg gcgcaggagg
       61 agagggcggt gcgggtcggg tccggccgcc gcgcccgctt cagcaccttc cgctgtccgc
      121 cgctgcggtc gcctcgtcct gcagactttc tgaccctttg gtactagacg ccatctagaa
      181 tggtgttatt cgacatgtat cttagaccag catcccctgg gagcatgtca gaagtgcata
      241 cttccaggcc acagccctgc caaatcagaa tatctgaggg agcacccgga atcagtgttt
      301 tcaggagcct cgagtgattc taacgcaagg tcacgcttta gaagtactga tagaaggtgc
      361 tgaccattct ggagccggtt tccaattgcc ttgattaaag taggaacatt ctatggcttg
      421 gatgacttac atttcacatt ggtttgagca agatgattgc tatgaaggac tacaaagagc
      481 aaacatgtcc caggtaagac aagtgggact gctggctgct ggatgtcagc catggaacaa
      541 agatgtgtgc gttgccaatg gagacaggtt tgcgtactgt gctaccctgg ccatctatat
      601 ttatcagttg gatcaccgtt ataatgaatt caaacttcac gcaattatgt ctgaacataa
      661 aaaaacaatc acagctatct cttggtgtcc acataaccct gatctgtttg caagtggcag
      721 tactgataat ttcgtgatca tttggaatgt tgcagaacaa aaagtcattg ctaaactcga
      781 caatacaaaa gggacgcctg cctctctcag ctggtgctgg aatgcagatg acacagtggc
      841 gtttgcttcc cagagaggcc cactgttcct ctggaccatc tcaggaccgg acagtggcgt
      901 gactgtgcac aaagaagccc atagcttcct gtctgatatc tgtatattca gatggcatac
      961 ccagaaaaag gggaaagttg tctttggtca tattgatgga agtctatcaa tttttcaacc
     1021 aggtagtaaa agtcagaaac atgttctgag acctgaatct cttgaaggga ccgacgcaga
     1081 ggatcccgtt acagccctgg aatgggaccc actgtctact gattacctcc tagtggctaa
     1141 tttgcatcgt ggaattcgcc tagtagattc ggaatcactt tgttgcataa caacatttaa
     1201 ttttcccggt gcagtggctt ctgtgcaatg cttggcctgg gttcccggtg ctcctggcat
     1261 gtttataact ggagattctc aagtcggtgt tttgcgcgtt tggaatgttt ctagggcaac
     1321 acctgttgat aattttaaat taaagaaaac agggtttcac tgcttacatg tactgaattc
     1381 tcctccaagg aagaaatttt caatccagtc cccaaccaaa aatcattata catcctcaac
     1441 gagtgaagca gtaccacccc caactttgac acagtatcaa gcattttctg ttcctcctgg
     1501 tcacgcagtg tgctgtttct tggatggtgg agttggactt tatgatatgg gagctaagaa
     1561 gtgggatttt cttagggact tgggtcatgt ggaaactatc tttgactgca aattcaaacc
     1621 tgatgatccc aatcttttag caacagcttc atttgacggc acaataaaag tctgggatat
     1681 aaacacactg acggcagtgt acacttcccc agggaatgaa ggggttattt attccctttc
     1741 atgggctcca ggtgatttaa attgtattgc tggagcaact tctcgaaatg gtgcttttat
     1801 ttgggatatt aaaaagggca aaatcgtaca acgatttaat gagcatggaa aaaatggaat
     1861 attctgcatt gcctggagtc ataaagattc caaaagaata gcaacctgca gtggtgatgg
     1921 ttactgtatt attcgaacag ttgatggtaa agtactacac aaatacaaac atccagctgc
     1981 agtgtttggt tgtgattgga gccaaaacaa cagagacatg atagccactg gctgtgaaga
     2041 caaaaatgtt cgcgtctatt atgtggccac cagttccgat caaccactga aagtgtttag
     2101 tgggcataca gagaaagtgt tccatgttaa gtggtctcct ctgagggagg gaattctttg
     2161 cagtggctct gatgatggtt ctgttcgaat ctgggattat actaaagatg catgcataaa
     2221 cgttcttaga ggacacacgg cacctgtgcg gggattaatg tggaatactg agatcccata
     2281 cctactaata tctggcagct gggactatac tataaaagtg tgggacactc gggaaggagc
     2341 ttgtttggat accgtgtacg atcatggtgc agatgtatac ggcttagcat gccacccacg
     2401 tcgccccttc actatggcct cgtgctcccg ggactctact gtgagactct ggtcattaac
     2461 gccgttaatc actcctttac aaataaatat tctggcagat agatcctggg aagaaattat
     2521 cgggaacact gattgtgctg tagaacaagg catgccccct ctgctgtgtg gcaaagtgtc
     2581 aagagatatc aaacaggagg tagagaaact aagtggcaac cctcgtgtga aaaaactaag
     2641 atggttttca gaatgtttat cacctccggg tggcagtgac aatttatggg acttagttgc
     2701 tgtgataaaa gggcaagatg atagcttact tcctcagaac tactgtaaag gaataatgca
     2761 tttgaaacat ctgattacat tccgaacatc tgaagcccaa gaactaacca cagtcaagat
     2821 gtctaaattt ggtggtggta tcggtgtccc tactaaagag gaaaggctga aggaagctgc
     2881 tgaaatacac ttgcgattag gacagatccg gagatactgt gagctgatgg tggaacttgg
     2941 agagtgggac aaagccttgt cagttgcgcc aggggtgtct gtgaaatact ggaagaagtt
     3001 gatgcagagg agagctgatc agctaatcca ggaagataag gatgatgtca ttccatactg
     3061 catagccact ggcgatgtga aaaaattagt ccattttttt atgtcaagag gtcagcttaa
     3121 agaagctctg cttgttgcac aggctgcttg tgagggaaat atgcaaacct tccatgtttc
     3181 aacacctaaa ggatcttctt attctgatga tatctacaag gaagacttta acgaactcct
     3241 gcaggaagcc tgcagagagc tggcggaatg gtattttcag gatggccggg cagtcctagc
     3301 cgcgtgttgc cacctcgctg tggataatat cgagctggct atggcgtacc tgattcgcgg
     3361 aaacgagctg gagttggcag tctgtgtggg cacagtgctt ggagagctgg caggacccgc
     3421 aacccactat gctctcgagc tgctggcgag aaagtgcatg atgattccaa cgtggaattt
     3481 ggcagctgat cttctcctga tgactcctga tagcgaacta cagttagtaa aactctgtgc
     3541 tttctacccg gggtgtatcg aagagataaa tgatcttcat gagaagtgca agctacccac
     3601 agtagaagaa tgtatgcaat tagctgagac agcccatgcc gatggcaata tatttgaaac
     3661 tataaagtat tacttgttaa gtcaagaacc tgagaaagcc cttcctattg gtattgactt
     3721 catcaaagga tccatcagta gttcaaattg gactttggat accatttacc ccgttcttga
     3781 cctactgagt tatgttcgta ctgaaaaatt actcctgcat acatgtactg aagctcgaaa
     3841 cgaactgctg atactatgtg ggtacgttgg tgctttgctg gctatcagaa gacagtacca
     3901 aagcatcgtc ccggcccttt atgagtacac gagtcagcta ttgaaacgtc ggaaggtgtc
     3961 agtgcctata aaaatcgaac acctttcaga ggaattggat gcatggagag cttgcacaca
     4021 atccatcaac cgatcatcag aagaatctcc atatacatcc ccttctgatt cacaaagaat
     4081 ggtttatgca actttactga agagactaaa ggaagaacca ctcagaggaa ttattggacc
     4141 agattatgtg accgggtcaa acctaccgag tcattctgat attcacatct cttgttttac
     4201 gggattaaaa atccagggcc ctgtattttt ccttgaagat gggaaatcca ccatctcctt
     4261 gaatgacgct ctgatgtggg caaaggtgaa cccattctca cctctgggga ctggaatacg
     4321 actcaaccca ttttgacaga aggtttttct cacacttaat tgttttttta aagaccgttt
     4381 tccggttagt attaccttta acctttgttg tccaagagcc aaaggtctgg aggaggaggt
     4441 gggaagtggg gactcacagc tgattttatt cgttaagttc aacaaataaa atatttatat
     4501 aatttcaagg aaaaataggt gtctccttat ttgggaggaa ggtcatattt aaattataaa
     4561 ggactgacaa atctaaagga gcatatcaac ttttcacaaa aggtaccaaa tattctattg
     4621 ttgaaacact gaaacttata aagtagtgca acacctagag ccgtgcttga cgtgcagccg
     4681 gtgcctagag tatttgggtg actgagtatc ttgaagtgtc gaaatgtaag gtgtgtacag
     4741 ctgatcttca agttaacaaa cactggtatt gtcctctata aaatgtatag taaaccacta
     4801 gttttagctc atatttaatc gaagttttca gttgtaagtt taatatatat atcaataaat
     4861 gggtacgcaa agtacttttg agttttatct ttttaaagag aaaacattcc caagttctgt
     4921 agctgaaact caaatgtctc attataaagg aataggctac ataagcatga aaaacattag
     4981 aggtgaaaaa cgcaaaatgc agtgaaatct atgtgaaaat ttgcatctga tgataattca
     5041 ctagttaaaa agatatttgg aatttatgaa tattaatttt cattaatgta tttaacattc
     5101 acataatctc taatcaagtt acattataat atagttataa taaacaattt atttgatgaa
     5161 aatcagtttc aaataaattt ctgtaagtaa ataggttatt agttgaaatt tgggatatat
     5221 tatgtaaatt caagttttaa aaatatttat taaaatagtg catctgtcga tatttttaaa
     5281 aagcctgagg cgtgacgaca agtatttcaa ttgtactcga attctgactt caaaatttac
     5341 gaaatgaatg cacactagga agaatagtac tttgatactc aagctgtttt acaagattta
     5401 taatacaggt gttttgtcta attagggagt gagctcatat aactagaata atggtggttt
     5461 ttattatctt taaacttgtt gcatttaaag tactttaaaa tttttcttaa gcttcttaaa
     5521 acagaaaaca gtatatatta tgtacctgtc tatcacactg acctacttct aactccacaa
     5581 aaaaagcatt ttagccttaa attccatttt ataaagaaaa tagttaatat tatagaagag
     5641 aatgtataca actcagagat gcaatgggta atgtaaatcg tatctgagaa gtacttttta
     5701 acccttagtg atacgtgtaa ttcagatttc tttttttttt taggtgaggg gtattattaa
     5761 ttggcatata tgcactgaaa tctcctcact taaaaagtgg cagtctaaat cctgctatca
     5821 ttctctgttt tgttttaaaa tagattaaaa accctaatct gtgctttaaa tacttcaaag
     5881 gtactaagtt atacatatat aaacaattgt tacattcttc tgtatgttta atgaatgcaa
     5941 gaaataatat tttaatgtat aaagtatgaa aaagatctta caactcttta gcacatgaag
     6001 accattgagg tataacccag tatttgtcga aagcttaaat ttgattgatt caaatgcaat
     6061 tctgttattc cttgacttca acaatgttct ataccttaat attatgacta ctaattcttc
     6121 ataaaatgtc attgactgtg ttgatctgta tgtgtcttaa tatgaaaaac aaaagtttta
     6181 caaatttata aagttaaatt tcattgttat gtttagtatg catgaaaacc caaacaaaga
     6241 atgtgaactt gtttttattt gaatgtgtcc atattactga taatgtggac aaattatttt
     6301 gcaagtttaa gtatgctttt atgaaagaag tctcattaga caatgatttt gataaaaact
     6361 gcaattaaag ccag
//
LOCUS       XM_032618216            6226 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X2, mRNA.
ACCESSION   XM_032618216
VERSION     XM_032618216.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6226
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6226
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746670"
     CDS             265..4188
                     /gene="WDR17"
                     /codon_start=1
                     /product="WD repeat-containing protein 17 isoform X1"
                     /protein_id="XP_032474107.1"
                     /db_xref="GeneID:116746670"
                     /translation="MAWMTYISHWFEQDDCYEGLQRANMSQVRQVGLLAAGCQPWNKD
                     VCVANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASG
                     STDNFVIIWNVAEQKVIAKLDNTKGTPASLSWCWNADDTVAFASQRGPLFLWTISGPD
                     SGVTVHKEAHSFLSDICIFRWHTQKKGKVVFGHIDGSLSIFQPGSKSQKHVLRPESLE
                     GTDAEDPVTALEWDPLSTDYLLVANLHRGIRLVDSESLCCITTFNFPGAVASVQCLAW
                     VPGAPGMFITGDSQVGVLRVWNVSRATPVDNFKLKKTGFHCLHVLNSPPRKKFSIQSP
                     TKNHYTSSTSEAVPPPTLTQYQAFSVPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGH
                     VETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLN
                     CIAGATSRNGAFIWDIKKGKIVQRFNEHGKNGIFCIAWSHKDSKRIATCSGDGYCIIR
                     TVDGKVLHKYKHPAAVFGCDWSQNNRDMIATGCEDKNVRVYYVATSSDQPLKVFSGHT
                     EKVFHVKWSPLREGILCSGSDDGSVRIWDYTKDACINVLRGHTAPVRGLMWNTEIPYL
                     LISGSWDYTIKVWDTREGACLDTVYDHGADVYGLACHPRRPFTMASCSRDSTVRLWSL
                     TPLITPLQINILADRSWEEIIGNTDCAVEQGMPPLLCGKVSRDIKQEVEKLSGNPRVK
                     KLRWFSECLSPPGGSDNLWDLVAVIKGQDDSLLPQNYCKGIMHLKHLITFRTSEAQEL
                     TTVKMSKFGGGIGVPTKEERLKEAAEIHLRLGQIRRYCELMVELGEWDKALSVAPGVS
                     VKYWKKLMQRRADQLIQEDKDDVIPYCIATGDVKKLVHFFMSRGQLKEALLVAQAACE
                     GNMQTFHVSTPKGSSYSDDIYKEDFNELLQEACRELAEWYFQDGRAVLAACCHLAVDN
                     IELAMAYLIRGNELELAVCVGTVLGELAGPATHYALELLARKCMMIPTWNLAADLLLM
                     TPDSELQLVKLCAFYPGCIEEINDLHEKCKLPTVEECMQLAETAHADGNIFETIKYYL
                     LSQEPEKALPIGIDFIKGSISSSNWTLDTIYPVLDLLSYVRTEKLLLHTCTEARNELL
                     ILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRKVSVPIKIEHLSEELDAWRACTQS
                     INRSSEESPYTSPSDSQRMVYATLLKRLKEEPLRGIIGPDYVTGSNLPSHSDIHISCF
                     TGLKIQGPVFFLEDGKSTISLNDALMWAKVNPFSPLGTGIRLNPF"
     misc_feature    487..1530
                     /gene="WDR17"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(508..510,565..567,577..579,595..600,634..639,
                     694..696,706..708,724..729,775..780,835..837,847..849,
                     865..870,928..930,982..984,997..999,1015..1020,1060..1065,
                     1117..1119,1129..1131,1153..1158,1231..1236,1360..1362,
                     1375..1377,1393..1398,1435..1440,1495..1497,1507..1509,
                     1525..1530)
                     /gene="WDR17"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    520..636
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    652..771
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    790..921
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    943..1053
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1075..1230
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1333..2313
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1333..1437
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1450..1566
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1582..1695
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1711..1818
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1837..1953
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1969..2082
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2098..2211
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2227..2304
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gtcacgtggg gctcggagcg ggacccggag cgccgcgcgc gcggccaggc ttgcggagcc
       61 cgcctccgcg cccttcagac cccgcggccc ggccgcgcag cctcggagct cgcggcgcag
      121 gaggagaggg cggtgcgggt cgggtccggc cgccgcgccc gcttcagcac cttccgctgt
      181 ccgccgctgc ggtcgcctcg tcctgcaggt gctgaccatt ctggagccgg tttccaattg
      241 ccttgattaa agtaggaaca ttctatggct tggatgactt acatttcaca ttggtttgag
      301 caagatgatt gctatgaagg actacaaaga gcaaacatgt cccaggtaag acaagtggga
      361 ctgctggctg ctggatgtca gccatggaac aaagatgtgt gcgttgccaa tggagacagg
      421 tttgcgtact gtgctaccct ggccatctat atttatcagt tggatcaccg ttataatgaa
      481 ttcaaacttc acgcaattat gtctgaacat aaaaaaacaa tcacagctat ctcttggtgt
      541 ccacataacc ctgatctgtt tgcaagtggc agtactgata atttcgtgat catttggaat
      601 gttgcagaac aaaaagtcat tgctaaactc gacaatacaa aagggacgcc tgcctctctc
      661 agctggtgct ggaatgcaga tgacacagtg gcgtttgctt cccagagagg cccactgttc
      721 ctctggacca tctcaggacc ggacagtggc gtgactgtgc acaaagaagc ccatagcttc
      781 ctgtctgata tctgtatatt cagatggcat acccagaaaa aggggaaagt tgtctttggt
      841 catattgatg gaagtctatc aatttttcaa ccaggtagta aaagtcagaa acatgttctg
      901 agacctgaat ctcttgaagg gaccgacgca gaggatcccg ttacagccct ggaatgggac
      961 ccactgtcta ctgattacct cctagtggct aatttgcatc gtggaattcg cctagtagat
     1021 tcggaatcac tttgttgcat aacaacattt aattttcccg gtgcagtggc ttctgtgcaa
     1081 tgcttggcct gggttcccgg tgctcctggc atgtttataa ctggagattc tcaagtcggt
     1141 gttttgcgcg tttggaatgt ttctagggca acacctgttg ataattttaa attaaagaaa
     1201 acagggtttc actgcttaca tgtactgaat tctcctccaa ggaagaaatt ttcaatccag
     1261 tccccaacca aaaatcatta tacatcctca acgagtgaag cagtaccacc cccaactttg
     1321 acacagtatc aagcattttc tgttcctcct ggtcacgcag tgtgctgttt cttggatggt
     1381 ggagttggac tttatgatat gggagctaag aagtgggatt ttcttaggga cttgggtcat
     1441 gtggaaacta tctttgactg caaattcaaa cctgatgatc ccaatctttt agcaacagct
     1501 tcatttgacg gcacaataaa agtctgggat ataaacacac tgacggcagt gtacacttcc
     1561 ccagggaatg aaggggttat ttattccctt tcatgggctc caggtgattt aaattgtatt
     1621 gctggagcaa cttctcgaaa tggtgctttt atttgggata ttaaaaaggg caaaatcgta
     1681 caacgattta atgagcatgg aaaaaatgga atattctgca ttgcctggag tcataaagat
     1741 tccaaaagaa tagcaacctg cagtggtgat ggttactgta ttattcgaac agttgatggt
     1801 aaagtactac acaaatacaa acatccagct gcagtgtttg gttgtgattg gagccaaaac
     1861 aacagagaca tgatagccac tggctgtgaa gacaaaaatg ttcgcgtcta ttatgtggcc
     1921 accagttccg atcaaccact gaaagtgttt agtgggcata cagagaaagt gttccatgtt
     1981 aagtggtctc ctctgaggga gggaattctt tgcagtggct ctgatgatgg ttctgttcga
     2041 atctgggatt atactaaaga tgcatgcata aacgttctta gaggacacac ggcacctgtg
     2101 cggggattaa tgtggaatac tgagatccca tacctactaa tatctggcag ctgggactat
     2161 actataaaag tgtgggacac tcgggaagga gcttgtttgg ataccgtgta cgatcatggt
     2221 gcagatgtat acggcttagc atgccaccca cgtcgcccct tcactatggc ctcgtgctcc
     2281 cgggactcta ctgtgagact ctggtcatta acgccgttaa tcactccttt acaaataaat
     2341 attctggcag atagatcctg ggaagaaatt atcgggaaca ctgattgtgc tgtagaacaa
     2401 ggcatgcccc ctctgctgtg tggcaaagtg tcaagagata tcaaacagga ggtagagaaa
     2461 ctaagtggca accctcgtgt gaaaaaacta agatggtttt cagaatgttt atcacctccg
     2521 ggtggcagtg acaatttatg ggacttagtt gctgtgataa aagggcaaga tgatagctta
     2581 cttcctcaga actactgtaa aggaataatg catttgaaac atctgattac attccgaaca
     2641 tctgaagccc aagaactaac cacagtcaag atgtctaaat ttggtggtgg tatcggtgtc
     2701 cctactaaag aggaaaggct gaaggaagct gctgaaatac acttgcgatt aggacagatc
     2761 cggagatact gtgagctgat ggtggaactt ggagagtggg acaaagcctt gtcagttgcg
     2821 ccaggggtgt ctgtgaaata ctggaagaag ttgatgcaga ggagagctga tcagctaatc
     2881 caggaagata aggatgatgt cattccatac tgcatagcca ctggcgatgt gaaaaaatta
     2941 gtccattttt ttatgtcaag aggtcagctt aaagaagctc tgcttgttgc acaggctgct
     3001 tgtgagggaa atatgcaaac cttccatgtt tcaacaccta aaggatcttc ttattctgat
     3061 gatatctaca aggaagactt taacgaactc ctgcaggaag cctgcagaga gctggcggaa
     3121 tggtattttc aggatggccg ggcagtccta gccgcgtgtt gccacctcgc tgtggataat
     3181 atcgagctgg ctatggcgta cctgattcgc ggaaacgagc tggagttggc agtctgtgtg
     3241 ggcacagtgc ttggagagct ggcaggaccc gcaacccact atgctctcga gctgctggcg
     3301 agaaagtgca tgatgattcc aacgtggaat ttggcagctg atcttctcct gatgactcct
     3361 gatagcgaac tacagttagt aaaactctgt gctttctacc cggggtgtat cgaagagata
     3421 aatgatcttc atgagaagtg caagctaccc acagtagaag aatgtatgca attagctgag
     3481 acagcccatg ccgatggcaa tatatttgaa actataaagt attacttgtt aagtcaagaa
     3541 cctgagaaag cccttcctat tggtattgac ttcatcaaag gatccatcag tagttcaaat
     3601 tggactttgg ataccattta ccccgttctt gacctactga gttatgttcg tactgaaaaa
     3661 ttactcctgc atacatgtac tgaagctcga aacgaactgc tgatactatg tgggtacgtt
     3721 ggtgctttgc tggctatcag aagacagtac caaagcatcg tcccggccct ttatgagtac
     3781 acgagtcagc tattgaaacg tcggaaggtg tcagtgccta taaaaatcga acacctttca
     3841 gaggaattgg atgcatggag agcttgcaca caatccatca accgatcatc agaagaatct
     3901 ccatatacat ccccttctga ttcacaaaga atggtttatg caactttact gaagagacta
     3961 aaggaagaac cactcagagg aattattgga ccagattatg tgaccgggtc aaacctaccg
     4021 agtcattctg atattcacat ctcttgtttt acgggattaa aaatccaggg ccctgtattt
     4081 ttccttgaag atgggaaatc caccatctcc ttgaatgacg ctctgatgtg ggcaaaggtg
     4141 aacccattct cacctctggg gactggaata cgactcaacc cattttgaca gaaggttttt
     4201 ctcacactta attgtttttt taaagaccgt tttccggtta gtattacctt taacctttgt
     4261 tgtccaagag ccaaaggtct ggaggaggag gtgggaagtg gggactcaca gctgatttta
     4321 ttcgttaagt tcaacaaata aaatatttat ataatttcaa ggaaaaatag gtgtctcctt
     4381 atttgggagg aaggtcatat ttaaattata aaggactgac aaatctaaag gagcatatca
     4441 acttttcaca aaaggtacca aatattctat tgttgaaaca ctgaaactta taaagtagtg
     4501 caacacctag agccgtgctt gacgtgcagc cggtgcctag agtatttggg tgactgagta
     4561 tcttgaagtg tcgaaatgta aggtgtgtac agctgatctt caagttaaca aacactggta
     4621 ttgtcctcta taaaatgtat agtaaaccac tagttttagc tcatatttaa tcgaagtttt
     4681 cagttgtaag tttaatatat atatcaataa atgggtacgc aaagtacttt tgagttttat
     4741 ctttttaaag agaaaacatt cccaagttct gtagctgaaa ctcaaatgtc tcattataaa
     4801 ggaataggct acataagcat gaaaaacatt agaggtgaaa aacgcaaaat gcagtgaaat
     4861 ctatgtgaaa atttgcatct gatgataatt cactagttaa aaagatattt ggaatttatg
     4921 aatattaatt ttcattaatg tatttaacat tcacataatc tctaatcaag ttacattata
     4981 atatagttat aataaacaat ttatttgatg aaaatcagtt tcaaataaat ttctgtaagt
     5041 aaataggtta ttagttgaaa tttgggatat attatgtaaa ttcaagtttt aaaaatattt
     5101 attaaaatag tgcatctgtc gatattttta aaaagcctga ggcgtgacga caagtatttc
     5161 aattgtactc gaattctgac ttcaaaattt acgaaatgaa tgcacactag gaagaatagt
     5221 actttgatac tcaagctgtt ttacaagatt tataatacag gtgttttgtc taattaggga
     5281 gtgagctcat ataactagaa taatggtggt ttttattatc tttaaacttg ttgcatttaa
     5341 agtactttaa aatttttctt aagcttctta aaacagaaaa cagtatatat tatgtacctg
     5401 tctatcacac tgacctactt ctaactccac aaaaaaagca ttttagcctt aaattccatt
     5461 ttataaagaa aatagttaat attatagaag agaatgtata caactcagag atgcaatggg
     5521 taatgtaaat cgtatctgag aagtactttt taacccttag tgatacgtgt aattcagatt
     5581 tctttttttt tttaggtgag gggtattatt aattggcata tatgcactga aatctcctca
     5641 cttaaaaagt ggcagtctaa atcctgctat cattctctgt tttgttttaa aatagattaa
     5701 aaaccctaat ctgtgcttta aatacttcaa aggtactaag ttatacatat ataaacaatt
     5761 gttacattct tctgtatgtt taatgaatgc aagaaataat attttaatgt ataaagtatg
     5821 aaaaagatct tacaactctt tagcacatga agaccattga ggtataaccc agtatttgtc
     5881 gaaagcttaa atttgattga ttcaaatgca attctgttat tccttgactt caacaatgtt
     5941 ctatacctta atattatgac tactaattct tcataaaatg tcattgactg tgttgatctg
     6001 tatgtgtctt aatatgaaaa acaaaagttt tacaaattta taaagttaaa tttcattgtt
     6061 atgtttagta tgcatgaaaa cccaaacaaa gaatgtgaac ttgtttttat ttgaatgtgt
     6121 ccatattact gataatgtgg acaaattatt ttgcaagttt aagtatgctt ttatgaaaga
     6181 agtctcatta gacaatgatt ttgataaaaa ctgcaattaa agccag
//
LOCUS       XM_032618217            6117 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X3, mRNA.
ACCESSION   XM_032618217
VERSION     XM_032618217.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6117
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6117
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746670"
     CDS             201..4079
                     /gene="WDR17"
                     /codon_start=1
                     /product="WD repeat-containing protein 17 isoform X2"
                     /protein_id="XP_032474108.1"
                     /db_xref="GeneID:116746670"
                     /translation="MAWMTYISHWFEQDDCYEGLQRANMSQVRQVGLLAAGCQPWNKD
                     VCVANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASG
                     STDNFVIIWNVAEQKVIAKLDNTKGTPASLSWCWNADDTVAFASQRGPLFLWTISGPD
                     SGVTVHKEAHSFLSDICIFRWHTQKKGKVVFGHIDGSLSIFQPGTDAEDPVTALEWDP
                     LSTDYLLVANLHRGIRLVDSESLCCITTFNFPGAVASVQCLAWVPGAPGMFITGDSQV
                     GVLRVWNVSRATPVDNFKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPP
                     PTLTQYQAFSVPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPN
                     LLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWD
                     IKKGKIVQRFNEHGKNGIFCIAWSHKDSKRIATCSGDGYCIIRTVDGKVLHKYKHPAA
                     VFGCDWSQNNRDMIATGCEDKNVRVYYVATSSDQPLKVFSGHTEKVFHVKWSPLREGI
                     LCSGSDDGSVRIWDYTKDACINVLRGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDT
                     REGACLDTVYDHGADVYGLACHPRRPFTMASCSRDSTVRLWSLTPLITPLQINILADR
                     SWEEIIGNTDCAVEQGMPPLLCGKVSRDIKQEVEKLSGNPRVKKLRWFSECLSPPGGS
                     DNLWDLVAVIKGQDDSLLPQNYCKGIMHLKHLITFRTSEAQELTTVKMSKFGGGIGVP
                     TKEERLKEAAEIHLRLGQIRRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQL
                     IQEDKDDVIPYCIATGDVKKLVHFFMSRGQLKEALLVAQAACEGNMQTFHVSTPKGSS
                     YSDDIYKEDFNELLQEACRELAEWYFQDGRAVLAACCHLAVDNIELAMAYLIRGNELE
                     LAVCVGTVLGELAGPATHYALELLARKCMMIPTWNLAADLLLMTPDSELQLVKLCAFY
                     PGCIEEINDLHEKCKLPTVEECMQLAETAHADGNIFETIKYYLLSQEPEKALPIGIDF
                     IKGSISSSNWTLDTIYPVLDLLSYVRTEKLLLHTCTEARNELLILCGYVGALLAIRRQ
                     YQSIVPALYEYTSQLLKRRKVSVPIKIEHLSEELDAWRACTQSINRSSEESPYTSPSD
                     SQRMVYATLLKRLKEEPLRGIIGPDYVTGSNLPSHSDIHISCFTGLKIQGPVFFLEDG
                     KSTISLNDALMWAKVNPFSPLGTGIRLNPF"
     misc_feature    423..1421
                     /gene="WDR17"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(444..446,501..503,513..515,531..536,570..575,
                     630..632,642..644,660..665,711..716,771..773,783..785,
                     801..806,819..821,873..875,888..890,906..911,951..956,
                     1008..1010,1020..1022,1044..1049,1122..1127,1251..1253,
                     1266..1268,1284..1289,1326..1331,1386..1388,1398..1400,
                     1416..1421)
                     /gene="WDR17"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    459..572
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    585..698
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    720..944
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    966..1121
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1224..2204
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1224..1328
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1341..1457
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1473..1586
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1602..1709
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1728..1844
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1860..1973
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1989..2102
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2118..2195
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 tccgcgccct tcagaccccg cggcccggcc gcgcagcctc ggagctcgcg gcgcaggagg
       61 agagggcggt gcgggtcggg tccggccgcc gcgcccgctt cagcaccttc cgctgtccgc
      121 cgctgcggtc gcctcgtcct gcaggtgctg accattctgg agccggtttc caattgcctt
      181 gattaaagta ggaacattct atggcttgga tgacttacat ttcacattgg tttgagcaag
      241 atgattgcta tgaaggacta caaagagcaa acatgtccca ggtaagacaa gtgggactgc
      301 tggctgctgg atgtcagcca tggaacaaag atgtgtgcgt tgccaatgga gacaggtttg
      361 cgtactgtgc taccctggcc atctatattt atcagttgga tcaccgttat aatgaattca
      421 aacttcacgc aattatgtct gaacataaaa aaacaatcac agctatctct tggtgtccac
      481 ataaccctga tctgtttgca agtggcagta ctgataattt cgtgatcatt tggaatgttg
      541 cagaacaaaa agtcattgct aaactcgaca atacaaaagg gacgcctgcc tctctcagct
      601 ggtgctggaa tgcagatgac acagtggcgt ttgcttccca gagaggccca ctgttcctct
      661 ggaccatctc aggaccggac agtggcgtga ctgtgcacaa agaagcccat agcttcctgt
      721 ctgatatctg tatattcaga tggcataccc agaaaaaggg gaaagttgtc tttggtcata
      781 ttgatggaag tctatcaatt tttcaaccag ggaccgacgc agaggatccc gttacagccc
      841 tggaatggga cccactgtct actgattacc tcctagtggc taatttgcat cgtggaattc
      901 gcctagtaga ttcggaatca ctttgttgca taacaacatt taattttccc ggtgcagtgg
      961 cttctgtgca atgcttggcc tgggttcccg gtgctcctgg catgtttata actggagatt
     1021 ctcaagtcgg tgttttgcgc gtttggaatg tttctagggc aacacctgtt gataatttta
     1081 aattaaagaa aacagggttt cactgcttac atgtactgaa ttctcctcca aggaagaaat
     1141 tttcaatcca gtccccaacc aaaaatcatt atacatcctc aacgagtgaa gcagtaccac
     1201 ccccaacttt gacacagtat caagcatttt ctgttcctcc tggtcacgca gtgtgctgtt
     1261 tcttggatgg tggagttgga ctttatgata tgggagctaa gaagtgggat tttcttaggg
     1321 acttgggtca tgtggaaact atctttgact gcaaattcaa acctgatgat cccaatcttt
     1381 tagcaacagc ttcatttgac ggcacaataa aagtctggga tataaacaca ctgacggcag
     1441 tgtacacttc cccagggaat gaaggggtta tttattccct ttcatgggct ccaggtgatt
     1501 taaattgtat tgctggagca acttctcgaa atggtgcttt tatttgggat attaaaaagg
     1561 gcaaaatcgt acaacgattt aatgagcatg gaaaaaatgg aatattctgc attgcctgga
     1621 gtcataaaga ttccaaaaga atagcaacct gcagtggtga tggttactgt attattcgaa
     1681 cagttgatgg taaagtacta cacaaataca aacatccagc tgcagtgttt ggttgtgatt
     1741 ggagccaaaa caacagagac atgatagcca ctggctgtga agacaaaaat gttcgcgtct
     1801 attatgtggc caccagttcc gatcaaccac tgaaagtgtt tagtgggcat acagagaaag
     1861 tgttccatgt taagtggtct cctctgaggg agggaattct ttgcagtggc tctgatgatg
     1921 gttctgttcg aatctgggat tatactaaag atgcatgcat aaacgttctt agaggacaca
     1981 cggcacctgt gcggggatta atgtggaata ctgagatccc atacctacta atatctggca
     2041 gctgggacta tactataaaa gtgtgggaca ctcgggaagg agcttgtttg gataccgtgt
     2101 acgatcatgg tgcagatgta tacggcttag catgccaccc acgtcgcccc ttcactatgg
     2161 cctcgtgctc ccgggactct actgtgagac tctggtcatt aacgccgtta atcactcctt
     2221 tacaaataaa tattctggca gatagatcct gggaagaaat tatcgggaac actgattgtg
     2281 ctgtagaaca aggcatgccc cctctgctgt gtggcaaagt gtcaagagat atcaaacagg
     2341 aggtagagaa actaagtggc aaccctcgtg tgaaaaaact aagatggttt tcagaatgtt
     2401 tatcacctcc gggtggcagt gacaatttat gggacttagt tgctgtgata aaagggcaag
     2461 atgatagctt acttcctcag aactactgta aaggaataat gcatttgaaa catctgatta
     2521 cattccgaac atctgaagcc caagaactaa ccacagtcaa gatgtctaaa tttggtggtg
     2581 gtatcggtgt ccctactaaa gaggaaaggc tgaaggaagc tgctgaaata cacttgcgat
     2641 taggacagat ccggagatac tgtgagctga tggtggaact tggagagtgg gacaaagcct
     2701 tgtcagttgc gccaggggtg tctgtgaaat actggaagaa gttgatgcag aggagagctg
     2761 atcagctaat ccaggaagat aaggatgatg tcattccata ctgcatagcc actggcgatg
     2821 tgaaaaaatt agtccatttt tttatgtcaa gaggtcagct taaagaagct ctgcttgttg
     2881 cacaggctgc ttgtgaggga aatatgcaaa ccttccatgt ttcaacacct aaaggatctt
     2941 cttattctga tgatatctac aaggaagact ttaacgaact cctgcaggaa gcctgcagag
     3001 agctggcgga atggtatttt caggatggcc gggcagtcct agccgcgtgt tgccacctcg
     3061 ctgtggataa tatcgagctg gctatggcgt acctgattcg cggaaacgag ctggagttgg
     3121 cagtctgtgt gggcacagtg cttggagagc tggcaggacc cgcaacccac tatgctctcg
     3181 agctgctggc gagaaagtgc atgatgattc caacgtggaa tttggcagct gatcttctcc
     3241 tgatgactcc tgatagcgaa ctacagttag taaaactctg tgctttctac ccggggtgta
     3301 tcgaagagat aaatgatctt catgagaagt gcaagctacc cacagtagaa gaatgtatgc
     3361 aattagctga gacagcccat gccgatggca atatatttga aactataaag tattacttgt
     3421 taagtcaaga acctgagaaa gcccttccta ttggtattga cttcatcaaa ggatccatca
     3481 gtagttcaaa ttggactttg gataccattt accccgttct tgacctactg agttatgttc
     3541 gtactgaaaa attactcctg catacatgta ctgaagctcg aaacgaactg ctgatactat
     3601 gtgggtacgt tggtgctttg ctggctatca gaagacagta ccaaagcatc gtcccggccc
     3661 tttatgagta cacgagtcag ctattgaaac gtcggaaggt gtcagtgcct ataaaaatcg
     3721 aacacctttc agaggaattg gatgcatgga gagcttgcac acaatccatc aaccgatcat
     3781 cagaagaatc tccatataca tccccttctg attcacaaag aatggtttat gcaactttac
     3841 tgaagagact aaaggaagaa ccactcagag gaattattgg accagattat gtgaccgggt
     3901 caaacctacc gagtcattct gatattcaca tctcttgttt tacgggatta aaaatccagg
     3961 gccctgtatt tttccttgaa gatgggaaat ccaccatctc cttgaatgac gctctgatgt
     4021 gggcaaaggt gaacccattc tcacctctgg ggactggaat acgactcaac ccattttgac
     4081 agaaggtttt tctcacactt aattgttttt ttaaagaccg ttttccggtt agtattacct
     4141 ttaacctttg ttgtccaaga gccaaaggtc tggaggagga ggtgggaagt ggggactcac
     4201 agctgatttt attcgttaag ttcaacaaat aaaatattta tataatttca aggaaaaata
     4261 ggtgtctcct tatttgggag gaaggtcata tttaaattat aaaggactga caaatctaaa
     4321 ggagcatatc aacttttcac aaaaggtacc aaatattcta ttgttgaaac actgaaactt
     4381 ataaagtagt gcaacaccta gagccgtgct tgacgtgcag ccggtgccta gagtatttgg
     4441 gtgactgagt atcttgaagt gtcgaaatgt aaggtgtgta cagctgatct tcaagttaac
     4501 aaacactggt attgtcctct ataaaatgta tagtaaacca ctagttttag ctcatattta
     4561 atcgaagttt tcagttgtaa gtttaatata tatatcaata aatgggtacg caaagtactt
     4621 ttgagtttta tctttttaaa gagaaaacat tcccaagttc tgtagctgaa actcaaatgt
     4681 ctcattataa aggaataggc tacataagca tgaaaaacat tagaggtgaa aaacgcaaaa
     4741 tgcagtgaaa tctatgtgaa aatttgcatc tgatgataat tcactagtta aaaagatatt
     4801 tggaatttat gaatattaat tttcattaat gtatttaaca ttcacataat ctctaatcaa
     4861 gttacattat aatatagtta taataaacaa tttatttgat gaaaatcagt ttcaaataaa
     4921 tttctgtaag taaataggtt attagttgaa atttgggata tattatgtaa attcaagttt
     4981 taaaaatatt tattaaaata gtgcatctgt cgatattttt aaaaagcctg aggcgtgacg
     5041 acaagtattt caattgtact cgaattctga cttcaaaatt tacgaaatga atgcacacta
     5101 ggaagaatag tactttgata ctcaagctgt tttacaagat ttataataca ggtgttttgt
     5161 ctaattaggg agtgagctca tataactaga ataatggtgg tttttattat ctttaaactt
     5221 gttgcattta aagtacttta aaatttttct taagcttctt aaaacagaaa acagtatata
     5281 ttatgtacct gtctatcaca ctgacctact tctaactcca caaaaaaagc attttagcct
     5341 taaattccat tttataaaga aaatagttaa tattatagaa gagaatgtat acaactcaga
     5401 gatgcaatgg gtaatgtaaa tcgtatctga gaagtacttt ttaaccctta gtgatacgtg
     5461 taattcagat ttcttttttt ttttaggtga ggggtattat taattggcat atatgcactg
     5521 aaatctcctc acttaaaaag tggcagtcta aatcctgcta tcattctctg ttttgtttta
     5581 aaatagatta aaaaccctaa tctgtgcttt aaatacttca aaggtactaa gttatacata
     5641 tataaacaat tgttacattc ttctgtatgt ttaatgaatg caagaaataa tattttaatg
     5701 tataaagtat gaaaaagatc ttacaactct ttagcacatg aagaccattg aggtataacc
     5761 cagtatttgt cgaaagctta aatttgattg attcaaatgc aattctgtta ttccttgact
     5821 tcaacaatgt tctatacctt aatattatga ctactaattc ttcataaaat gtcattgact
     5881 gtgttgatct gtatgtgtct taatatgaaa aacaaaagtt ttacaaattt ataaagttaa
     5941 atttcattgt tatgtttagt atgcatgaaa acccaaacaa agaatgtgaa cttgttttta
     6001 tttgaatgtg tccatattac tgataatgtg gacaaattat tttgcaagtt taagtatgct
     6061 tttatgaaag aagtctcatt agacaatgat tttgataaaa actgcaatta aagccag
//
LOCUS       XM_032618218            6073 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X4, mRNA.
ACCESSION   XM_032618218
VERSION     XM_032618218.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6073
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6073
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746670"
     CDS             175..4035
                     /gene="WDR17"
                     /codon_start=1
                     /product="WD repeat-containing protein 17 isoform X3"
                     /protein_id="XP_032474109.1"
                     /db_xref="GeneID:116746670"
                     /translation="MANMSQVRQVGLLAAGCQPWNKDVCVANGDRFAYCATLAIYIYQ
                     LDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNFVIIWNVAEQKVIAKLD
                     NTKGTPASLSWCWNADDTVAFASQRGPLFLWTISGPDSGVTVHKEAHSFLSDICIFRW
                     HTQKKGKVVFGHIDGSLSIFQPGSKSQKHVLRPESLEGTDAEDPVTALEWDPLSTDYL
                     LVANLHRGIRLVDSESLCCITTFNFPGAVASVQCLAWVPGAPGMFITGDSQVGVLRVW
                     NVSRATPVDNFKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQY
                     QAFSVPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATAS
                     FDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKI
                     VQRFNEHGKNGIFCIAWSHKDSKRIATCSGDGYCIIRTVDGKVLHKYKHPAAVFGCDW
                     SQNNRDMIATGCEDKNVRVYYVATSSDQPLKVFSGHTEKVFHVKWSPLREGILCSGSD
                     DGSVRIWDYTKDACINVLRGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTREGACL
                     DTVYDHGADVYGLACHPRRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEII
                     GNTDCAVEQGMPPLLCGKVSRDIKQEVEKLSGNPRVKKLRWFSECLSPPGGSDNLWDL
                     VAVIKGQDDSLLPQNYCKGIMHLKHLITFRTSEAQELTTVKMSKFGGGIGVPTKEERL
                     KEAAEIHLRLGQIRRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKD
                     DVIPYCIATGDVKKLVHFFMSRGQLKEALLVAQAACEGNMQTFHVSTPKGSSYSDDIY
                     KEDFNELLQEACRELAEWYFQDGRAVLAACCHLAVDNIELAMAYLIRGNELELAVCVG
                     TVLGELAGPATHYALELLARKCMMIPTWNLAADLLLMTPDSELQLVKLCAFYPGCIEE
                     INDLHEKCKLPTVEECMQLAETAHADGNIFETIKYYLLSQEPEKALPIGIDFIKGSIS
                     SSNWTLDTIYPVLDLLSYVRTEKLLLHTCTEARNELLILCGYVGALLAIRRQYQSIVP
                     ALYEYTSQLLKRRKVSVPIKIEHLSEELDAWRACTQSINRSSEESPYTSPSDSQRMVY
                     ATLLKRLKEEPLRGIIGPDYVTGSNLPSHSDIHISCFTGLKIQGPVFFLEDGKSTISL
                     NDALMWAKVNPFSPLGTGIRLNPF"
     misc_feature    334..1377
                     /gene="WDR17"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(355..357,412..414,424..426,442..447,481..486,
                     541..543,553..555,571..576,622..627,682..684,694..696,
                     712..717,775..777,829..831,844..846,862..867,907..912,
                     964..966,976..978,1000..1005,1039..1044,1207..1209,
                     1222..1224,1240..1245,1282..1287,1342..1344,1354..1356,
                     1372..1377)
                     /gene="WDR17"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    367..483
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    499..618
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    637..768
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    790..900
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    922..1077
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1180..2160
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1180..1284
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1297..1413
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1429..1542
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1558..1665
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1684..1800
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1816..1929
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1945..2058
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2074..2151
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 ctggagccgg tttccaattg ccttgattaa agtaggaaca ttctatggct tggatgactt
       61 acatttcaca ttggtttgag caagatgatt gctatgaagg actacaaaga ctgagaaaca
      121 agctggtaaa catctcagga gccagcaaat atctaactct ggagaataac cctcatggca
      181 aacatgtccc aggtaagaca agtgggactg ctggctgctg gatgtcagcc atggaacaaa
      241 gatgtgtgcg ttgccaatgg agacaggttt gcgtactgtg ctaccctggc catctatatt
      301 tatcagttgg atcaccgtta taatgaattc aaacttcacg caattatgtc tgaacataaa
      361 aaaacaatca cagctatctc ttggtgtcca cataaccctg atctgtttgc aagtggcagt
      421 actgataatt tcgtgatcat ttggaatgtt gcagaacaaa aagtcattgc taaactcgac
      481 aatacaaaag ggacgcctgc ctctctcagc tggtgctgga atgcagatga cacagtggcg
      541 tttgcttccc agagaggccc actgttcctc tggaccatct caggaccgga cagtggcgtg
      601 actgtgcaca aagaagccca tagcttcctg tctgatatct gtatattcag atggcatacc
      661 cagaaaaagg ggaaagttgt ctttggtcat attgatggaa gtctatcaat ttttcaacca
      721 ggtagtaaaa gtcagaaaca tgttctgaga cctgaatctc ttgaagggac cgacgcagag
      781 gatcccgtta cagccctgga atgggaccca ctgtctactg attacctcct agtggctaat
      841 ttgcatcgtg gaattcgcct agtagattcg gaatcacttt gttgcataac aacatttaat
      901 tttcccggtg cagtggcttc tgtgcaatgc ttggcctggg ttcccggtgc tcctggcatg
      961 tttataactg gagattctca agtcggtgtt ttgcgcgttt ggaatgtttc tagggcaaca
     1021 cctgttgata attttaaatt aaagaaaaca gggtttcact gcttacatgt actgaattct
     1081 cctccaagga agaaattttc aatccagtcc ccaaccaaaa atcattatac atcctcaacg
     1141 agtgaagcag taccaccccc aactttgaca cagtatcaag cattttctgt tcctcctggt
     1201 cacgcagtgt gctgtttctt ggatggtgga gttggacttt atgatatggg agctaagaag
     1261 tgggattttc ttagggactt gggtcatgtg gaaactatct ttgactgcaa attcaaacct
     1321 gatgatccca atcttttagc aacagcttca tttgacggca caataaaagt ctgggatata
     1381 aacacactga cggcagtgta cacttcccca gggaatgaag gggttattta ttccctttca
     1441 tgggctccag gtgatttaaa ttgtattgct ggagcaactt ctcgaaatgg tgcttttatt
     1501 tgggatatta aaaagggcaa aatcgtacaa cgatttaatg agcatggaaa aaatggaata
     1561 ttctgcattg cctggagtca taaagattcc aaaagaatag caacctgcag tggtgatggt
     1621 tactgtatta ttcgaacagt tgatggtaaa gtactacaca aatacaaaca tccagctgca
     1681 gtgtttggtt gtgattggag ccaaaacaac agagacatga tagccactgg ctgtgaagac
     1741 aaaaatgttc gcgtctatta tgtggccacc agttccgatc aaccactgaa agtgtttagt
     1801 gggcatacag agaaagtgtt ccatgttaag tggtctcctc tgagggaggg aattctttgc
     1861 agtggctctg atgatggttc tgttcgaatc tgggattata ctaaagatgc atgcataaac
     1921 gttcttagag gacacacggc acctgtgcgg ggattaatgt ggaatactga gatcccatac
     1981 ctactaatat ctggcagctg ggactatact ataaaagtgt gggacactcg ggaaggagct
     2041 tgtttggata ccgtgtacga tcatggtgca gatgtatacg gcttagcatg ccacccacgt
     2101 cgccccttca ctatggcctc gtgctcccgg gactctactg tgagactctg gtcattaacg
     2161 ccgttaatca ctcctttaca aataaatatt ctggcagata gatcctggga agaaattatc
     2221 gggaacactg attgtgctgt agaacaaggc atgccccctc tgctgtgtgg caaagtgtca
     2281 agagatatca aacaggaggt agagaaacta agtggcaacc ctcgtgtgaa aaaactaaga
     2341 tggttttcag aatgtttatc acctccgggt ggcagtgaca atttatggga cttagttgct
     2401 gtgataaaag ggcaagatga tagcttactt cctcagaact actgtaaagg aataatgcat
     2461 ttgaaacatc tgattacatt ccgaacatct gaagcccaag aactaaccac agtcaagatg
     2521 tctaaatttg gtggtggtat cggtgtccct actaaagagg aaaggctgaa ggaagctgct
     2581 gaaatacact tgcgattagg acagatccgg agatactgtg agctgatggt ggaacttgga
     2641 gagtgggaca aagccttgtc agttgcgcca ggggtgtctg tgaaatactg gaagaagttg
     2701 atgcagagga gagctgatca gctaatccag gaagataagg atgatgtcat tccatactgc
     2761 atagccactg gcgatgtgaa aaaattagtc cattttttta tgtcaagagg tcagcttaaa
     2821 gaagctctgc ttgttgcaca ggctgcttgt gagggaaata tgcaaacctt ccatgtttca
     2881 acacctaaag gatcttctta ttctgatgat atctacaagg aagactttaa cgaactcctg
     2941 caggaagcct gcagagagct ggcggaatgg tattttcagg atggccgggc agtcctagcc
     3001 gcgtgttgcc acctcgctgt ggataatatc gagctggcta tggcgtacct gattcgcgga
     3061 aacgagctgg agttggcagt ctgtgtgggc acagtgcttg gagagctggc aggacccgca
     3121 acccactatg ctctcgagct gctggcgaga aagtgcatga tgattccaac gtggaatttg
     3181 gcagctgatc ttctcctgat gactcctgat agcgaactac agttagtaaa actctgtgct
     3241 ttctacccgg ggtgtatcga agagataaat gatcttcatg agaagtgcaa gctacccaca
     3301 gtagaagaat gtatgcaatt agctgagaca gcccatgccg atggcaatat atttgaaact
     3361 ataaagtatt acttgttaag tcaagaacct gagaaagccc ttcctattgg tattgacttc
     3421 atcaaaggat ccatcagtag ttcaaattgg actttggata ccatttaccc cgttcttgac
     3481 ctactgagtt atgttcgtac tgaaaaatta ctcctgcata catgtactga agctcgaaac
     3541 gaactgctga tactatgtgg gtacgttggt gctttgctgg ctatcagaag acagtaccaa
     3601 agcatcgtcc cggcccttta tgagtacacg agtcagctat tgaaacgtcg gaaggtgtca
     3661 gtgcctataa aaatcgaaca cctttcagag gaattggatg catggagagc ttgcacacaa
     3721 tccatcaacc gatcatcaga agaatctcca tatacatccc cttctgattc acaaagaatg
     3781 gtttatgcaa ctttactgaa gagactaaag gaagaaccac tcagaggaat tattggacca
     3841 gattatgtga ccgggtcaaa cctaccgagt cattctgata ttcacatctc ttgttttacg
     3901 ggattaaaaa tccagggccc tgtatttttc cttgaagatg ggaaatccac catctccttg
     3961 aatgacgctc tgatgtgggc aaaggtgaac ccattctcac ctctggggac tggaatacga
     4021 ctcaacccat tttgacagaa ggtttttctc acacttaatt gtttttttaa agaccgtttt
     4081 ccggttagta ttacctttaa cctttgttgt ccaagagcca aaggtctgga ggaggaggtg
     4141 ggaagtgggg actcacagct gattttattc gttaagttca acaaataaaa tatttatata
     4201 atttcaagga aaaataggtg tctccttatt tgggaggaag gtcatattta aattataaag
     4261 gactgacaaa tctaaaggag catatcaact tttcacaaaa ggtaccaaat attctattgt
     4321 tgaaacactg aaacttataa agtagtgcaa cacctagagc cgtgcttgac gtgcagccgg
     4381 tgcctagagt atttgggtga ctgagtatct tgaagtgtcg aaatgtaagg tgtgtacagc
     4441 tgatcttcaa gttaacaaac actggtattg tcctctataa aatgtatagt aaaccactag
     4501 ttttagctca tatttaatcg aagttttcag ttgtaagttt aatatatata tcaataaatg
     4561 ggtacgcaaa gtacttttga gttttatctt tttaaagaga aaacattccc aagttctgta
     4621 gctgaaactc aaatgtctca ttataaagga ataggctaca taagcatgaa aaacattaga
     4681 ggtgaaaaac gcaaaatgca gtgaaatcta tgtgaaaatt tgcatctgat gataattcac
     4741 tagttaaaaa gatatttgga atttatgaat attaattttc attaatgtat ttaacattca
     4801 cataatctct aatcaagtta cattataata tagttataat aaacaattta tttgatgaaa
     4861 atcagtttca aataaatttc tgtaagtaaa taggttatta gttgaaattt gggatatatt
     4921 atgtaaattc aagttttaaa aatatttatt aaaatagtgc atctgtcgat atttttaaaa
     4981 agcctgaggc gtgacgacaa gtatttcaat tgtactcgaa ttctgacttc aaaatttacg
     5041 aaatgaatgc acactaggaa gaatagtact ttgatactca agctgtttta caagatttat
     5101 aatacaggtg ttttgtctaa ttagggagtg agctcatata actagaataa tggtggtttt
     5161 tattatcttt aaacttgttg catttaaagt actttaaaat ttttcttaag cttcttaaaa
     5221 cagaaaacag tatatattat gtacctgtct atcacactga cctacttcta actccacaaa
     5281 aaaagcattt tagccttaaa ttccatttta taaagaaaat agttaatatt atagaagaga
     5341 atgtatacaa ctcagagatg caatgggtaa tgtaaatcgt atctgagaag tactttttaa
     5401 cccttagtga tacgtgtaat tcagatttct tttttttttt aggtgagggg tattattaat
     5461 tggcatatat gcactgaaat ctcctcactt aaaaagtggc agtctaaatc ctgctatcat
     5521 tctctgtttt gttttaaaat agattaaaaa ccctaatctg tgctttaaat acttcaaagg
     5581 tactaagtta tacatatata aacaattgtt acattcttct gtatgtttaa tgaatgcaag
     5641 aaataatatt ttaatgtata aagtatgaaa aagatcttac aactctttag cacatgaaga
     5701 ccattgaggt ataacccagt atttgtcgaa agcttaaatt tgattgattc aaatgcaatt
     5761 ctgttattcc ttgacttcaa caatgttcta taccttaata ttatgactac taattcttca
     5821 taaaatgtca ttgactgtgt tgatctgtat gtgtcttaat atgaaaaaca aaagttttac
     5881 aaatttataa agttaaattt cattgttatg tttagtatgc atgaaaaccc aaacaaagaa
     5941 tgtgaacttg tttttatttg aatgtgtcca tattactgat aatgtggaca aattattttg
     6001 caagtttaag tatgctttta tgaaagaagt ctcattagac aatgattttg ataaaaactg
     6061 caattaaagc cag
//
LOCUS       XM_032618219            6047 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X5, mRNA.
ACCESSION   XM_032618219
VERSION     XM_032618219.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6047
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6047
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746670"
     CDS             149..4009
                     /gene="WDR17"
                     /codon_start=1
                     /product="WD repeat-containing protein 17 isoform X3"
                     /protein_id="XP_032474110.1"
                     /db_xref="GeneID:116746670"
                     /translation="MANMSQVRQVGLLAAGCQPWNKDVCVANGDRFAYCATLAIYIYQ
                     LDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNFVIIWNVAEQKVIAKLD
                     NTKGTPASLSWCWNADDTVAFASQRGPLFLWTISGPDSGVTVHKEAHSFLSDICIFRW
                     HTQKKGKVVFGHIDGSLSIFQPGSKSQKHVLRPESLEGTDAEDPVTALEWDPLSTDYL
                     LVANLHRGIRLVDSESLCCITTFNFPGAVASVQCLAWVPGAPGMFITGDSQVGVLRVW
                     NVSRATPVDNFKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQY
                     QAFSVPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATAS
                     FDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKI
                     VQRFNEHGKNGIFCIAWSHKDSKRIATCSGDGYCIIRTVDGKVLHKYKHPAAVFGCDW
                     SQNNRDMIATGCEDKNVRVYYVATSSDQPLKVFSGHTEKVFHVKWSPLREGILCSGSD
                     DGSVRIWDYTKDACINVLRGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTREGACL
                     DTVYDHGADVYGLACHPRRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEII
                     GNTDCAVEQGMPPLLCGKVSRDIKQEVEKLSGNPRVKKLRWFSECLSPPGGSDNLWDL
                     VAVIKGQDDSLLPQNYCKGIMHLKHLITFRTSEAQELTTVKMSKFGGGIGVPTKEERL
                     KEAAEIHLRLGQIRRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKD
                     DVIPYCIATGDVKKLVHFFMSRGQLKEALLVAQAACEGNMQTFHVSTPKGSSYSDDIY
                     KEDFNELLQEACRELAEWYFQDGRAVLAACCHLAVDNIELAMAYLIRGNELELAVCVG
                     TVLGELAGPATHYALELLARKCMMIPTWNLAADLLLMTPDSELQLVKLCAFYPGCIEE
                     INDLHEKCKLPTVEECMQLAETAHADGNIFETIKYYLLSQEPEKALPIGIDFIKGSIS
                     SSNWTLDTIYPVLDLLSYVRTEKLLLHTCTEARNELLILCGYVGALLAIRRQYQSIVP
                     ALYEYTSQLLKRRKVSVPIKIEHLSEELDAWRACTQSINRSSEESPYTSPSDSQRMVY
                     ATLLKRLKEEPLRGIIGPDYVTGSNLPSHSDIHISCFTGLKIQGPVFFLEDGKSTISL
                     NDALMWAKVNPFSPLGTGIRLNPF"
     misc_feature    308..1351
                     /gene="WDR17"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(329..331,386..388,398..400,416..421,455..460,
                     515..517,527..529,545..550,596..601,656..658,668..670,
                     686..691,749..751,803..805,818..820,836..841,881..886,
                     938..940,950..952,974..979,1013..1018,1181..1183,
                     1196..1198,1214..1219,1256..1261,1316..1318,1328..1330,
                     1346..1351)
                     /gene="WDR17"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    341..457
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    473..592
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    611..742
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    764..874
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    896..1051
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1154..2134
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1154..1258
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1271..1387
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1403..1516
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1532..1639
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1658..1774
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1790..1903
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1919..2032
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2048..2125
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 tttgagcaag atgattgcta tgaaggacta caaagagatt ctgagggtaa ataggatact
       61 tatctgatag acttaaaagc agagctgaga aacaagctgg taaacatctc aggagccagc
      121 aaatatctaa ctctggagaa taaccctcat ggcaaacatg tcccaggtaa gacaagtggg
      181 actgctggct gctggatgtc agccatggaa caaagatgtg tgcgttgcca atggagacag
      241 gtttgcgtac tgtgctaccc tggccatcta tatttatcag ttggatcacc gttataatga
      301 attcaaactt cacgcaatta tgtctgaaca taaaaaaaca atcacagcta tctcttggtg
      361 tccacataac cctgatctgt ttgcaagtgg cagtactgat aatttcgtga tcatttggaa
      421 tgttgcagaa caaaaagtca ttgctaaact cgacaataca aaagggacgc ctgcctctct
      481 cagctggtgc tggaatgcag atgacacagt ggcgtttgct tcccagagag gcccactgtt
      541 cctctggacc atctcaggac cggacagtgg cgtgactgtg cacaaagaag cccatagctt
      601 cctgtctgat atctgtatat tcagatggca tacccagaaa aaggggaaag ttgtctttgg
      661 tcatattgat ggaagtctat caatttttca accaggtagt aaaagtcaga aacatgttct
      721 gagacctgaa tctcttgaag ggaccgacgc agaggatccc gttacagccc tggaatggga
      781 cccactgtct actgattacc tcctagtggc taatttgcat cgtggaattc gcctagtaga
      841 ttcggaatca ctttgttgca taacaacatt taattttccc ggtgcagtgg cttctgtgca
      901 atgcttggcc tgggttcccg gtgctcctgg catgtttata actggagatt ctcaagtcgg
      961 tgttttgcgc gtttggaatg tttctagggc aacacctgtt gataatttta aattaaagaa
     1021 aacagggttt cactgcttac atgtactgaa ttctcctcca aggaagaaat tttcaatcca
     1081 gtccccaacc aaaaatcatt atacatcctc aacgagtgaa gcagtaccac ccccaacttt
     1141 gacacagtat caagcatttt ctgttcctcc tggtcacgca gtgtgctgtt tcttggatgg
     1201 tggagttgga ctttatgata tgggagctaa gaagtgggat tttcttaggg acttgggtca
     1261 tgtggaaact atctttgact gcaaattcaa acctgatgat cccaatcttt tagcaacagc
     1321 ttcatttgac ggcacaataa aagtctggga tataaacaca ctgacggcag tgtacacttc
     1381 cccagggaat gaaggggtta tttattccct ttcatgggct ccaggtgatt taaattgtat
     1441 tgctggagca acttctcgaa atggtgcttt tatttgggat attaaaaagg gcaaaatcgt
     1501 acaacgattt aatgagcatg gaaaaaatgg aatattctgc attgcctgga gtcataaaga
     1561 ttccaaaaga atagcaacct gcagtggtga tggttactgt attattcgaa cagttgatgg
     1621 taaagtacta cacaaataca aacatccagc tgcagtgttt ggttgtgatt ggagccaaaa
     1681 caacagagac atgatagcca ctggctgtga agacaaaaat gttcgcgtct attatgtggc
     1741 caccagttcc gatcaaccac tgaaagtgtt tagtgggcat acagagaaag tgttccatgt
     1801 taagtggtct cctctgaggg agggaattct ttgcagtggc tctgatgatg gttctgttcg
     1861 aatctgggat tatactaaag atgcatgcat aaacgttctt agaggacaca cggcacctgt
     1921 gcggggatta atgtggaata ctgagatccc atacctacta atatctggca gctgggacta
     1981 tactataaaa gtgtgggaca ctcgggaagg agcttgtttg gataccgtgt acgatcatgg
     2041 tgcagatgta tacggcttag catgccaccc acgtcgcccc ttcactatgg cctcgtgctc
     2101 ccgggactct actgtgagac tctggtcatt aacgccgtta atcactcctt tacaaataaa
     2161 tattctggca gatagatcct gggaagaaat tatcgggaac actgattgtg ctgtagaaca
     2221 aggcatgccc cctctgctgt gtggcaaagt gtcaagagat atcaaacagg aggtagagaa
     2281 actaagtggc aaccctcgtg tgaaaaaact aagatggttt tcagaatgtt tatcacctcc
     2341 gggtggcagt gacaatttat gggacttagt tgctgtgata aaagggcaag atgatagctt
     2401 acttcctcag aactactgta aaggaataat gcatttgaaa catctgatta cattccgaac
     2461 atctgaagcc caagaactaa ccacagtcaa gatgtctaaa tttggtggtg gtatcggtgt
     2521 ccctactaaa gaggaaaggc tgaaggaagc tgctgaaata cacttgcgat taggacagat
     2581 ccggagatac tgtgagctga tggtggaact tggagagtgg gacaaagcct tgtcagttgc
     2641 gccaggggtg tctgtgaaat actggaagaa gttgatgcag aggagagctg atcagctaat
     2701 ccaggaagat aaggatgatg tcattccata ctgcatagcc actggcgatg tgaaaaaatt
     2761 agtccatttt tttatgtcaa gaggtcagct taaagaagct ctgcttgttg cacaggctgc
     2821 ttgtgaggga aatatgcaaa ccttccatgt ttcaacacct aaaggatctt cttattctga
     2881 tgatatctac aaggaagact ttaacgaact cctgcaggaa gcctgcagag agctggcgga
     2941 atggtatttt caggatggcc gggcagtcct agccgcgtgt tgccacctcg ctgtggataa
     3001 tatcgagctg gctatggcgt acctgattcg cggaaacgag ctggagttgg cagtctgtgt
     3061 gggcacagtg cttggagagc tggcaggacc cgcaacccac tatgctctcg agctgctggc
     3121 gagaaagtgc atgatgattc caacgtggaa tttggcagct gatcttctcc tgatgactcc
     3181 tgatagcgaa ctacagttag taaaactctg tgctttctac ccggggtgta tcgaagagat
     3241 aaatgatctt catgagaagt gcaagctacc cacagtagaa gaatgtatgc aattagctga
     3301 gacagcccat gccgatggca atatatttga aactataaag tattacttgt taagtcaaga
     3361 acctgagaaa gcccttccta ttggtattga cttcatcaaa ggatccatca gtagttcaaa
     3421 ttggactttg gataccattt accccgttct tgacctactg agttatgttc gtactgaaaa
     3481 attactcctg catacatgta ctgaagctcg aaacgaactg ctgatactat gtgggtacgt
     3541 tggtgctttg ctggctatca gaagacagta ccaaagcatc gtcccggccc tttatgagta
     3601 cacgagtcag ctattgaaac gtcggaaggt gtcagtgcct ataaaaatcg aacacctttc
     3661 agaggaattg gatgcatgga gagcttgcac acaatccatc aaccgatcat cagaagaatc
     3721 tccatataca tccccttctg attcacaaag aatggtttat gcaactttac tgaagagact
     3781 aaaggaagaa ccactcagag gaattattgg accagattat gtgaccgggt caaacctacc
     3841 gagtcattct gatattcaca tctcttgttt tacgggatta aaaatccagg gccctgtatt
     3901 tttccttgaa gatgggaaat ccaccatctc cttgaatgac gctctgatgt gggcaaaggt
     3961 gaacccattc tcacctctgg ggactggaat acgactcaac ccattttgac agaaggtttt
     4021 tctcacactt aattgttttt ttaaagaccg ttttccggtt agtattacct ttaacctttg
     4081 ttgtccaaga gccaaaggtc tggaggagga ggtgggaagt ggggactcac agctgatttt
     4141 attcgttaag ttcaacaaat aaaatattta tataatttca aggaaaaata ggtgtctcct
     4201 tatttgggag gaaggtcata tttaaattat aaaggactga caaatctaaa ggagcatatc
     4261 aacttttcac aaaaggtacc aaatattcta ttgttgaaac actgaaactt ataaagtagt
     4321 gcaacaccta gagccgtgct tgacgtgcag ccggtgccta gagtatttgg gtgactgagt
     4381 atcttgaagt gtcgaaatgt aaggtgtgta cagctgatct tcaagttaac aaacactggt
     4441 attgtcctct ataaaatgta tagtaaacca ctagttttag ctcatattta atcgaagttt
     4501 tcagttgtaa gtttaatata tatatcaata aatgggtacg caaagtactt ttgagtttta
     4561 tctttttaaa gagaaaacat tcccaagttc tgtagctgaa actcaaatgt ctcattataa
     4621 aggaataggc tacataagca tgaaaaacat tagaggtgaa aaacgcaaaa tgcagtgaaa
     4681 tctatgtgaa aatttgcatc tgatgataat tcactagtta aaaagatatt tggaatttat
     4741 gaatattaat tttcattaat gtatttaaca ttcacataat ctctaatcaa gttacattat
     4801 aatatagtta taataaacaa tttatttgat gaaaatcagt ttcaaataaa tttctgtaag
     4861 taaataggtt attagttgaa atttgggata tattatgtaa attcaagttt taaaaatatt
     4921 tattaaaata gtgcatctgt cgatattttt aaaaagcctg aggcgtgacg acaagtattt
     4981 caattgtact cgaattctga cttcaaaatt tacgaaatga atgcacacta ggaagaatag
     5041 tactttgata ctcaagctgt tttacaagat ttataataca ggtgttttgt ctaattaggg
     5101 agtgagctca tataactaga ataatggtgg tttttattat ctttaaactt gttgcattta
     5161 aagtacttta aaatttttct taagcttctt aaaacagaaa acagtatata ttatgtacct
     5221 gtctatcaca ctgacctact tctaactcca caaaaaaagc attttagcct taaattccat
     5281 tttataaaga aaatagttaa tattatagaa gagaatgtat acaactcaga gatgcaatgg
     5341 gtaatgtaaa tcgtatctga gaagtacttt ttaaccctta gtgatacgtg taattcagat
     5401 ttcttttttt ttttaggtga ggggtattat taattggcat atatgcactg aaatctcctc
     5461 acttaaaaag tggcagtcta aatcctgcta tcattctctg ttttgtttta aaatagatta
     5521 aaaaccctaa tctgtgcttt aaatacttca aaggtactaa gttatacata tataaacaat
     5581 tgttacattc ttctgtatgt ttaatgaatg caagaaataa tattttaatg tataaagtat
     5641 gaaaaagatc ttacaactct ttagcacatg aagaccattg aggtataacc cagtatttgt
     5701 cgaaagctta aatttgattg attcaaatgc aattctgtta ttccttgact tcaacaatgt
     5761 tctatacctt aatattatga ctactaattc ttcataaaat gtcattgact gtgttgatct
     5821 gtatgtgtct taatatgaaa aacaaaagtt ttacaaattt ataaagttaa atttcattgt
     5881 tatgtttagt atgcatgaaa acccaaacaa agaatgtgaa cttgttttta tttgaatgtg
     5941 tccatattac tgataatgtg gacaaattat tttgcaagtt taagtatgct tttatgaaag
     6001 aagtctcatt agacaatgat tttgataaaa actgcaatta aagccag
//
LOCUS       XM_032618220            5944 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X6, mRNA.
ACCESSION   XM_032618220
VERSION     XM_032618220.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5944
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5944
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746670"
     CDS             55..3906
                     /gene="WDR17"
                     /codon_start=1
                     /product="WD repeat-containing protein 17 isoform X4"
                     /protein_id="XP_032474111.1"
                     /db_xref="GeneID:116746670"
                     /translation="MSQVRQVGLLAAGCQPWNKDVCVANGDRFAYCATLAIYIYQLDH
                     RYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNFVIIWNVAEQKVIAKLDNTK
                     GTPASLSWCWNADDTVAFASQRGPLFLWTISGPDSGVTVHKEAHSFLSDICIFRWHTQ
                     KKGKVVFGHIDGSLSIFQPGSKSQKHVLRPESLEGTDAEDPVTALEWDPLSTDYLLVA
                     NLHRGIRLVDSESLCCITTFNFPGAVASVQCLAWVPGAPGMFITGDSQVGVLRVWNVS
                     RATPVDNFKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQYQAF
                     SVPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATASFDG
                     TIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKIVQR
                     FNEHGKNGIFCIAWSHKDSKRIATCSGDGYCIIRTVDGKVLHKYKHPAAVFGCDWSQN
                     NRDMIATGCEDKNVRVYYVATSSDQPLKVFSGHTEKVFHVKWSPLREGILCSGSDDGS
                     VRIWDYTKDACINVLRGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTREGACLDTV
                     YDHGADVYGLACHPRRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEIIGNT
                     DCAVEQGMPPLLCGKVSRDIKQEVEKLSGNPRVKKLRWFSECLSPPGGSDNLWDLVAV
                     IKGQDDSLLPQNYCKGIMHLKHLITFRTSEAQELTTVKMSKFGGGIGVPTKEERLKEA
                     AEIHLRLGQIRRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKDDVI
                     PYCIATGDVKKLVHFFMSRGQLKEALLVAQAACEGNMQTFHVSTPKGSSYSDDIYKED
                     FNELLQEACRELAEWYFQDGRAVLAACCHLAVDNIELAMAYLIRGNELELAVCVGTVL
                     GELAGPATHYALELLARKCMMIPTWNLAADLLLMTPDSELQLVKLCAFYPGCIEEIND
                     LHEKCKLPTVEECMQLAETAHADGNIFETIKYYLLSQEPEKALPIGIDFIKGSISSSN
                     WTLDTIYPVLDLLSYVRTEKLLLHTCTEARNELLILCGYVGALLAIRRQYQSIVPALY
                     EYTSQLLKRRKVSVPIKIEHLSEELDAWRACTQSINRSSEESPYTSPSDSQRMVYATL
                     LKRLKEEPLRGIIGPDYVTGSNLPSHSDIHISCFTGLKIQGPVFFLEDGKSTISLNDA
                     LMWAKVNPFSPLGTGIRLNPF"
     misc_feature    205..1248
                     /gene="WDR17"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(226..228,283..285,295..297,313..318,352..357,
                     412..414,424..426,442..447,493..498,553..555,565..567,
                     583..588,646..648,700..702,715..717,733..738,778..783,
                     835..837,847..849,871..876,949..954,1078..1080,1093..1095,
                     1111..1116,1153..1158,1213..1215,1225..1227,1243..1248)
                     /gene="WDR17"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    238..354
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    370..489
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    508..639
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    661..771
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    793..948
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1051..2031
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1051..1155
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1168..1284
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1300..1413
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1429..1536
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1555..1671
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1687..1800
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1816..1929
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1945..2022
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 gattctgagg gtaaatagga tacttatctg atagacttaa aagcagaggc aaacatgtcc
       61 caggtaagac aagtgggact gctggctgct ggatgtcagc catggaacaa agatgtgtgc
      121 gttgccaatg gagacaggtt tgcgtactgt gctaccctgg ccatctatat ttatcagttg
      181 gatcaccgtt ataatgaatt caaacttcac gcaattatgt ctgaacataa aaaaacaatc
      241 acagctatct cttggtgtcc acataaccct gatctgtttg caagtggcag tactgataat
      301 ttcgtgatca tttggaatgt tgcagaacaa aaagtcattg ctaaactcga caatacaaaa
      361 gggacgcctg cctctctcag ctggtgctgg aatgcagatg acacagtggc gtttgcttcc
      421 cagagaggcc cactgttcct ctggaccatc tcaggaccgg acagtggcgt gactgtgcac
      481 aaagaagccc atagcttcct gtctgatatc tgtatattca gatggcatac ccagaaaaag
      541 gggaaagttg tctttggtca tattgatgga agtctatcaa tttttcaacc aggtagtaaa
      601 agtcagaaac atgttctgag acctgaatct cttgaaggga ccgacgcaga ggatcccgtt
      661 acagccctgg aatgggaccc actgtctact gattacctcc tagtggctaa tttgcatcgt
      721 ggaattcgcc tagtagattc ggaatcactt tgttgcataa caacatttaa ttttcccggt
      781 gcagtggctt ctgtgcaatg cttggcctgg gttcccggtg ctcctggcat gtttataact
      841 ggagattctc aagtcggtgt tttgcgcgtt tggaatgttt ctagggcaac acctgttgat
      901 aattttaaat taaagaaaac agggtttcac tgcttacatg tactgaattc tcctccaagg
      961 aagaaatttt caatccagtc cccaaccaaa aatcattata catcctcaac gagtgaagca
     1021 gtaccacccc caactttgac acagtatcaa gcattttctg ttcctcctgg tcacgcagtg
     1081 tgctgtttct tggatggtgg agttggactt tatgatatgg gagctaagaa gtgggatttt
     1141 cttagggact tgggtcatgt ggaaactatc tttgactgca aattcaaacc tgatgatccc
     1201 aatcttttag caacagcttc atttgacggc acaataaaag tctgggatat aaacacactg
     1261 acggcagtgt acacttcccc agggaatgaa ggggttattt attccctttc atgggctcca
     1321 ggtgatttaa attgtattgc tggagcaact tctcgaaatg gtgcttttat ttgggatatt
     1381 aaaaagggca aaatcgtaca acgatttaat gagcatggaa aaaatggaat attctgcatt
     1441 gcctggagtc ataaagattc caaaagaata gcaacctgca gtggtgatgg ttactgtatt
     1501 attcgaacag ttgatggtaa agtactacac aaatacaaac atccagctgc agtgtttggt
     1561 tgtgattgga gccaaaacaa cagagacatg atagccactg gctgtgaaga caaaaatgtt
     1621 cgcgtctatt atgtggccac cagttccgat caaccactga aagtgtttag tgggcataca
     1681 gagaaagtgt tccatgttaa gtggtctcct ctgagggagg gaattctttg cagtggctct
     1741 gatgatggtt ctgttcgaat ctgggattat actaaagatg catgcataaa cgttcttaga
     1801 ggacacacgg cacctgtgcg gggattaatg tggaatactg agatcccata cctactaata
     1861 tctggcagct gggactatac tataaaagtg tgggacactc gggaaggagc ttgtttggat
     1921 accgtgtacg atcatggtgc agatgtatac ggcttagcat gccacccacg tcgccccttc
     1981 actatggcct cgtgctcccg ggactctact gtgagactct ggtcattaac gccgttaatc
     2041 actcctttac aaataaatat tctggcagat agatcctggg aagaaattat cgggaacact
     2101 gattgtgctg tagaacaagg catgccccct ctgctgtgtg gcaaagtgtc aagagatatc
     2161 aaacaggagg tagagaaact aagtggcaac cctcgtgtga aaaaactaag atggttttca
     2221 gaatgtttat cacctccggg tggcagtgac aatttatggg acttagttgc tgtgataaaa
     2281 gggcaagatg atagcttact tcctcagaac tactgtaaag gaataatgca tttgaaacat
     2341 ctgattacat tccgaacatc tgaagcccaa gaactaacca cagtcaagat gtctaaattt
     2401 ggtggtggta tcggtgtccc tactaaagag gaaaggctga aggaagctgc tgaaatacac
     2461 ttgcgattag gacagatccg gagatactgt gagctgatgg tggaacttgg agagtgggac
     2521 aaagccttgt cagttgcgcc aggggtgtct gtgaaatact ggaagaagtt gatgcagagg
     2581 agagctgatc agctaatcca ggaagataag gatgatgtca ttccatactg catagccact
     2641 ggcgatgtga aaaaattagt ccattttttt atgtcaagag gtcagcttaa agaagctctg
     2701 cttgttgcac aggctgcttg tgagggaaat atgcaaacct tccatgtttc aacacctaaa
     2761 ggatcttctt attctgatga tatctacaag gaagacttta acgaactcct gcaggaagcc
     2821 tgcagagagc tggcggaatg gtattttcag gatggccggg cagtcctagc cgcgtgttgc
     2881 cacctcgctg tggataatat cgagctggct atggcgtacc tgattcgcgg aaacgagctg
     2941 gagttggcag tctgtgtggg cacagtgctt ggagagctgg caggacccgc aacccactat
     3001 gctctcgagc tgctggcgag aaagtgcatg atgattccaa cgtggaattt ggcagctgat
     3061 cttctcctga tgactcctga tagcgaacta cagttagtaa aactctgtgc tttctacccg
     3121 gggtgtatcg aagagataaa tgatcttcat gagaagtgca agctacccac agtagaagaa
     3181 tgtatgcaat tagctgagac agcccatgcc gatggcaata tatttgaaac tataaagtat
     3241 tacttgttaa gtcaagaacc tgagaaagcc cttcctattg gtattgactt catcaaagga
     3301 tccatcagta gttcaaattg gactttggat accatttacc ccgttcttga cctactgagt
     3361 tatgttcgta ctgaaaaatt actcctgcat acatgtactg aagctcgaaa cgaactgctg
     3421 atactatgtg ggtacgttgg tgctttgctg gctatcagaa gacagtacca aagcatcgtc
     3481 ccggcccttt atgagtacac gagtcagcta ttgaaacgtc ggaaggtgtc agtgcctata
     3541 aaaatcgaac acctttcaga ggaattggat gcatggagag cttgcacaca atccatcaac
     3601 cgatcatcag aagaatctcc atatacatcc ccttctgatt cacaaagaat ggtttatgca
     3661 actttactga agagactaaa ggaagaacca ctcagaggaa ttattggacc agattatgtg
     3721 accgggtcaa acctaccgag tcattctgat attcacatct cttgttttac gggattaaaa
     3781 atccagggcc ctgtattttt ccttgaagat gggaaatcca ccatctcctt gaatgacgct
     3841 ctgatgtggg caaaggtgaa cccattctca cctctgggga ctggaatacg actcaaccca
     3901 ttttgacaga aggtttttct cacacttaat tgttttttta aagaccgttt tccggttagt
     3961 attaccttta acctttgttg tccaagagcc aaaggtctgg aggaggaggt gggaagtggg
     4021 gactcacagc tgattttatt cgttaagttc aacaaataaa atatttatat aatttcaagg
     4081 aaaaataggt gtctccttat ttgggaggaa ggtcatattt aaattataaa ggactgacaa
     4141 atctaaagga gcatatcaac ttttcacaaa aggtaccaaa tattctattg ttgaaacact
     4201 gaaacttata aagtagtgca acacctagag ccgtgcttga cgtgcagccg gtgcctagag
     4261 tatttgggtg actgagtatc ttgaagtgtc gaaatgtaag gtgtgtacag ctgatcttca
     4321 agttaacaaa cactggtatt gtcctctata aaatgtatag taaaccacta gttttagctc
     4381 atatttaatc gaagttttca gttgtaagtt taatatatat atcaataaat gggtacgcaa
     4441 agtacttttg agttttatct ttttaaagag aaaacattcc caagttctgt agctgaaact
     4501 caaatgtctc attataaagg aataggctac ataagcatga aaaacattag aggtgaaaaa
     4561 cgcaaaatgc agtgaaatct atgtgaaaat ttgcatctga tgataattca ctagttaaaa
     4621 agatatttgg aatttatgaa tattaatttt cattaatgta tttaacattc acataatctc
     4681 taatcaagtt acattataat atagttataa taaacaattt atttgatgaa aatcagtttc
     4741 aaataaattt ctgtaagtaa ataggttatt agttgaaatt tgggatatat tatgtaaatt
     4801 caagttttaa aaatatttat taaaatagtg catctgtcga tatttttaaa aagcctgagg
     4861 cgtgacgaca agtatttcaa ttgtactcga attctgactt caaaatttac gaaatgaatg
     4921 cacactagga agaatagtac tttgatactc aagctgtttt acaagattta taatacaggt
     4981 gttttgtcta attagggagt gagctcatat aactagaata atggtggttt ttattatctt
     5041 taaacttgtt gcatttaaag tactttaaaa tttttcttaa gcttcttaaa acagaaaaca
     5101 gtatatatta tgtacctgtc tatcacactg acctacttct aactccacaa aaaaagcatt
     5161 ttagccttaa attccatttt ataaagaaaa tagttaatat tatagaagag aatgtataca
     5221 actcagagat gcaatgggta atgtaaatcg tatctgagaa gtacttttta acccttagtg
     5281 atacgtgtaa ttcagatttc tttttttttt taggtgaggg gtattattaa ttggcatata
     5341 tgcactgaaa tctcctcact taaaaagtgg cagtctaaat cctgctatca ttctctgttt
     5401 tgttttaaaa tagattaaaa accctaatct gtgctttaaa tacttcaaag gtactaagtt
     5461 atacatatat aaacaattgt tacattcttc tgtatgttta atgaatgcaa gaaataatat
     5521 tttaatgtat aaagtatgaa aaagatctta caactcttta gcacatgaag accattgagg
     5581 tataacccag tatttgtcga aagcttaaat ttgattgatt caaatgcaat tctgttattc
     5641 cttgacttca acaatgttct ataccttaat attatgacta ctaattcttc ataaaatgtc
     5701 attgactgtg ttgatctgta tgtgtcttaa tatgaaaaac aaaagtttta caaatttata
     5761 aagttaaatt tcattgttat gtttagtatg catgaaaacc caaacaaaga atgtgaactt
     5821 gtttttattt gaatgtgtcc atattactga taatgtggac aaattatttt gcaagtttaa
     5881 gtatgctttt atgaaagaag tctcattaga caatgatttt gataaaaact gcaattaaag
     5941 ccag
//
LOCUS       XM_032618221            5931 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X7, mRNA.
ACCESSION   XM_032618221
VERSION     XM_032618221.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5931
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5931
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746670"
     CDS             201..3893
                     /gene="WDR17"
                     /codon_start=1
                     /product="WD repeat-containing protein 17 isoform X5"
                     /protein_id="XP_032474112.1"
                     /db_xref="GeneID:116746670"
                     /translation="MAWMTYISHWFEQDDCYEGLQRANMSQVRQVGLLAAGCQPWNKD
                     VCVANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASG
                     STDNFVIIWNVAEQKVIAKLDNTKGSKSQKHVLRPESLEGTDAEDPVTALEWDPLSTD
                     YLLVANLHRGIRLVDSESLCCITTFNFPGAVASVQCLAWVPGAPGMFITGDSQVGVLR
                     VWNVSRATPVDNFKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLT
                     QYQAFSVPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLAT
                     ASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKG
                     KIVQRFNEHGKNGIFCIAWSHKDSKRIATCSGDGYCIIRTVDGKVLHKYKHPAAVFGC
                     DWSQNNRDMIATGCEDKNVRVYYVATSSDQPLKVFSGHTEKVFHVKWSPLREGILCSG
                     SDDGSVRIWDYTKDACINVLRGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTREGA
                     CLDTVYDHGADVYGLACHPRRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEE
                     IIGNTDCAVEQGMPPLLCGKVSRDIKQEVEKLSGNPRVKKLRWFSECLSPPGGSDNLW
                     DLVAVIKGQDDSLLPQNYCKGIMHLKHLITFRTSEAQELTTVKMSKFGGGIGVPTKEE
                     RLKEAAEIHLRLGQIRRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQED
                     KDDVIPYCIATGDVKKLVHFFMSRGQLKEALLVAQAACEGNMQTFHVSTPKGSSYSDD
                     IYKEDFNELLQEACRELAEWYFQDGRAVLAACCHLAVDNIELAMAYLIRGNELELAVC
                     VGTVLGELAGPATHYALELLARKCMMIPTWNLAADLLLMTPDSELQLVKLCAFYPGCI
                     EEINDLHEKCKLPTVEECMQLAETAHADGNIFETIKYYLLSQEPEKALPIGIDFIKGS
                     ISSSNWTLDTIYPVLDLLSYVRTEKLLLHTCTEARNELLILCGYVGALLAIRRQYQSI
                     VPALYEYTSQLLKRRKVSVPIKIEHLSEELDAWRACTQSINRSSEESPYTSPSDSQRM
                     VYATLLKRLKEEPLRGIIGPDYVTGSNLPSHSDIHISCFTGLKIQGPVFFLEDGKSTI
                     SLNDALMWAKVNPFSPLGTGIRLNPF"
     misc_feature    <420..1244
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    456..626
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    648..758
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    780..935
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1038..2018
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1038..1142
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1155..1271
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1287..1400
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1416..1523
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1542..1658
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1674..1787
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1803..1916
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1932..2009
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 tccgcgccct tcagaccccg cggcccggcc gcgcagcctc ggagctcgcg gcgcaggagg
       61 agagggcggt gcgggtcggg tccggccgcc gcgcccgctt cagcaccttc cgctgtccgc
      121 cgctgcggtc gcctcgtcct gcaggtgctg accattctgg agccggtttc caattgcctt
      181 gattaaagta ggaacattct atggcttgga tgacttacat ttcacattgg tttgagcaag
      241 atgattgcta tgaaggacta caaagagcaa acatgtccca ggtaagacaa gtgggactgc
      301 tggctgctgg atgtcagcca tggaacaaag atgtgtgcgt tgccaatgga gacaggtttg
      361 cgtactgtgc taccctggcc atctatattt atcagttgga tcaccgttat aatgaattca
      421 aacttcacgc aattatgtct gaacataaaa aaacaatcac agctatctct tggtgtccac
      481 ataaccctga tctgtttgca agtggcagta ctgataattt cgtgatcatt tggaatgttg
      541 cagaacaaaa agtcattgct aaactcgaca atacaaaagg tagtaaaagt cagaaacatg
      601 ttctgagacc tgaatctctt gaagggaccg acgcagagga tcccgttaca gccctggaat
      661 gggacccact gtctactgat tacctcctag tggctaattt gcatcgtgga attcgcctag
      721 tagattcgga atcactttgt tgcataacaa catttaattt tcccggtgca gtggcttctg
      781 tgcaatgctt ggcctgggtt cccggtgctc ctggcatgtt tataactgga gattctcaag
      841 tcggtgtttt gcgcgtttgg aatgtttcta gggcaacacc tgttgataat tttaaattaa
      901 agaaaacagg gtttcactgc ttacatgtac tgaattctcc tccaaggaag aaattttcaa
      961 tccagtcccc aaccaaaaat cattatacat cctcaacgag tgaagcagta ccacccccaa
     1021 ctttgacaca gtatcaagca ttttctgttc ctcctggtca cgcagtgtgc tgtttcttgg
     1081 atggtggagt tggactttat gatatgggag ctaagaagtg ggattttctt agggacttgg
     1141 gtcatgtgga aactatcttt gactgcaaat tcaaacctga tgatcccaat cttttagcaa
     1201 cagcttcatt tgacggcaca ataaaagtct gggatataaa cacactgacg gcagtgtaca
     1261 cttccccagg gaatgaaggg gttatttatt ccctttcatg ggctccaggt gatttaaatt
     1321 gtattgctgg agcaacttct cgaaatggtg cttttatttg ggatattaaa aagggcaaaa
     1381 tcgtacaacg atttaatgag catggaaaaa atggaatatt ctgcattgcc tggagtcata
     1441 aagattccaa aagaatagca acctgcagtg gtgatggtta ctgtattatt cgaacagttg
     1501 atggtaaagt actacacaaa tacaaacatc cagctgcagt gtttggttgt gattggagcc
     1561 aaaacaacag agacatgata gccactggct gtgaagacaa aaatgttcgc gtctattatg
     1621 tggccaccag ttccgatcaa ccactgaaag tgtttagtgg gcatacagag aaagtgttcc
     1681 atgttaagtg gtctcctctg agggagggaa ttctttgcag tggctctgat gatggttctg
     1741 ttcgaatctg ggattatact aaagatgcat gcataaacgt tcttagagga cacacggcac
     1801 ctgtgcgggg attaatgtgg aatactgaga tcccatacct actaatatct ggcagctggg
     1861 actatactat aaaagtgtgg gacactcggg aaggagcttg tttggatacc gtgtacgatc
     1921 atggtgcaga tgtatacggc ttagcatgcc acccacgtcg ccccttcact atggcctcgt
     1981 gctcccggga ctctactgtg agactctggt cattaacgcc gttaatcact cctttacaaa
     2041 taaatattct ggcagataga tcctgggaag aaattatcgg gaacactgat tgtgctgtag
     2101 aacaaggcat gccccctctg ctgtgtggca aagtgtcaag agatatcaaa caggaggtag
     2161 agaaactaag tggcaaccct cgtgtgaaaa aactaagatg gttttcagaa tgtttatcac
     2221 ctccgggtgg cagtgacaat ttatgggact tagttgctgt gataaaaggg caagatgata
     2281 gcttacttcc tcagaactac tgtaaaggaa taatgcattt gaaacatctg attacattcc
     2341 gaacatctga agcccaagaa ctaaccacag tcaagatgtc taaatttggt ggtggtatcg
     2401 gtgtccctac taaagaggaa aggctgaagg aagctgctga aatacacttg cgattaggac
     2461 agatccggag atactgtgag ctgatggtgg aacttggaga gtgggacaaa gccttgtcag
     2521 ttgcgccagg ggtgtctgtg aaatactgga agaagttgat gcagaggaga gctgatcagc
     2581 taatccagga agataaggat gatgtcattc catactgcat agccactggc gatgtgaaaa
     2641 aattagtcca tttttttatg tcaagaggtc agcttaaaga agctctgctt gttgcacagg
     2701 ctgcttgtga gggaaatatg caaaccttcc atgtttcaac acctaaagga tcttcttatt
     2761 ctgatgatat ctacaaggaa gactttaacg aactcctgca ggaagcctgc agagagctgg
     2821 cggaatggta ttttcaggat ggccgggcag tcctagccgc gtgttgccac ctcgctgtgg
     2881 ataatatcga gctggctatg gcgtacctga ttcgcggaaa cgagctggag ttggcagtct
     2941 gtgtgggcac agtgcttgga gagctggcag gacccgcaac ccactatgct ctcgagctgc
     3001 tggcgagaaa gtgcatgatg attccaacgt ggaatttggc agctgatctt ctcctgatga
     3061 ctcctgatag cgaactacag ttagtaaaac tctgtgcttt ctacccgggg tgtatcgaag
     3121 agataaatga tcttcatgag aagtgcaagc tacccacagt agaagaatgt atgcaattag
     3181 ctgagacagc ccatgccgat ggcaatatat ttgaaactat aaagtattac ttgttaagtc
     3241 aagaacctga gaaagccctt cctattggta ttgacttcat caaaggatcc atcagtagtt
     3301 caaattggac tttggatacc atttaccccg ttcttgacct actgagttat gttcgtactg
     3361 aaaaattact cctgcataca tgtactgaag ctcgaaacga actgctgata ctatgtgggt
     3421 acgttggtgc tttgctggct atcagaagac agtaccaaag catcgtcccg gccctttatg
     3481 agtacacgag tcagctattg aaacgtcgga aggtgtcagt gcctataaaa atcgaacacc
     3541 tttcagagga attggatgca tggagagctt gcacacaatc catcaaccga tcatcagaag
     3601 aatctccata tacatcccct tctgattcac aaagaatggt ttatgcaact ttactgaaga
     3661 gactaaagga agaaccactc agaggaatta ttggaccaga ttatgtgacc gggtcaaacc
     3721 taccgagtca ttctgatatt cacatctctt gttttacggg attaaaaatc cagggccctg
     3781 tatttttcct tgaagatggg aaatccacca tctccttgaa tgacgctctg atgtgggcaa
     3841 aggtgaaccc attctcacct ctggggactg gaatacgact caacccattt tgacagaagg
     3901 tttttctcac acttaattgt ttttttaaag accgttttcc ggttagtatt acctttaacc
     3961 tttgttgtcc aagagccaaa ggtctggagg aggaggtggg aagtggggac tcacagctga
     4021 ttttattcgt taagttcaac aaataaaata tttatataat ttcaaggaaa aataggtgtc
     4081 tccttatttg ggaggaaggt catatttaaa ttataaagga ctgacaaatc taaaggagca
     4141 tatcaacttt tcacaaaagg taccaaatat tctattgttg aaacactgaa acttataaag
     4201 tagtgcaaca cctagagccg tgcttgacgt gcagccggtg cctagagtat ttgggtgact
     4261 gagtatcttg aagtgtcgaa atgtaaggtg tgtacagctg atcttcaagt taacaaacac
     4321 tggtattgtc ctctataaaa tgtatagtaa accactagtt ttagctcata tttaatcgaa
     4381 gttttcagtt gtaagtttaa tatatatatc aataaatggg tacgcaaagt acttttgagt
     4441 tttatctttt taaagagaaa acattcccaa gttctgtagc tgaaactcaa atgtctcatt
     4501 ataaaggaat aggctacata agcatgaaaa acattagagg tgaaaaacgc aaaatgcagt
     4561 gaaatctatg tgaaaatttg catctgatga taattcacta gttaaaaaga tatttggaat
     4621 ttatgaatat taattttcat taatgtattt aacattcaca taatctctaa tcaagttaca
     4681 ttataatata gttataataa acaatttatt tgatgaaaat cagtttcaaa taaatttctg
     4741 taagtaaata ggttattagt tgaaatttgg gatatattat gtaaattcaa gttttaaaaa
     4801 tatttattaa aatagtgcat ctgtcgatat ttttaaaaag cctgaggcgt gacgacaagt
     4861 atttcaattg tactcgaatt ctgacttcaa aatttacgaa atgaatgcac actaggaaga
     4921 atagtacttt gatactcaag ctgttttaca agatttataa tacaggtgtt ttgtctaatt
     4981 agggagtgag ctcatataac tagaataatg gtggttttta ttatctttaa acttgttgca
     5041 tttaaagtac tttaaaattt ttcttaagct tcttaaaaca gaaaacagta tatattatgt
     5101 acctgtctat cacactgacc tacttctaac tccacaaaaa aagcatttta gccttaaatt
     5161 ccattttata aagaaaatag ttaatattat agaagagaat gtatacaact cagagatgca
     5221 atgggtaatg taaatcgtat ctgagaagta ctttttaacc cttagtgata cgtgtaattc
     5281 agatttcttt ttttttttag gtgaggggta ttattaattg gcatatatgc actgaaatct
     5341 cctcacttaa aaagtggcag tctaaatcct gctatcattc tctgttttgt tttaaaatag
     5401 attaaaaacc ctaatctgtg ctttaaatac ttcaaaggta ctaagttata catatataaa
     5461 caattgttac attcttctgt atgtttaatg aatgcaagaa ataatatttt aatgtataaa
     5521 gtatgaaaaa gatcttacaa ctctttagca catgaagacc attgaggtat aacccagtat
     5581 ttgtcgaaag cttaaatttg attgattcaa atgcaattct gttattcctt gacttcaaca
     5641 atgttctata ccttaatatt atgactacta attcttcata aaatgtcatt gactgtgttg
     5701 atctgtatgt gtcttaatat gaaaaacaaa agttttacaa atttataaag ttaaatttca
     5761 ttgttatgtt tagtatgcat gaaaacccaa acaaagaatg tgaacttgtt tttatttgaa
     5821 tgtgtccata ttactgataa tgtggacaaa ttattttgca agtttaagta tgcttttatg
     5881 aaagaagtct cattagacaa tgattttgat aaaaactgca attaaagcca g
//
LOCUS       XM_032618222            5784 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X8, mRNA.
ACCESSION   XM_032618222
VERSION     XM_032618222.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5784
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5784
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746670"
     CDS             57..3746
                     /gene="WDR17"
                     /codon_start=1
                     /product="WD repeat-containing protein 17 isoform X6"
                     /protein_id="XP_032474113.1"
                     /db_xref="GeneID:116746670"
                     /translation="MSEHKKTITAISWCPHNPDLFASGSTDNFVIIWNVAEQKVIAKL
                     DNTKGTPASLSWCWNADDTVAFASQRGPLFLWTISGPDSGVTVHKEAHSFLSDICIFR
                     WHTQKKGKVVFGHIDGSLSIFQPGSKSQKHVLRPESLEGTDAEDPVTALEWDPLSTDY
                     LLVANLHRGIRLVDSESLCCITTFNFPGAVASVQCLAWVPGAPGMFITGDSQVGVLRV
                     WNVSRATPVDNFKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQ
                     YQAFSVPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATA
                     SFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGK
                     IVQRFNEHGKNGIFCIAWSHKDSKRIATCSGDGYCIIRTVDGKVLHKYKHPAAVFGCD
                     WSQNNRDMIATGCEDKNVRVYYVATSSDQPLKVFSGHTEKVFHVKWSPLREGILCSGS
                     DDGSVRIWDYTKDACINVLRGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTREGAC
                     LDTVYDHGADVYGLACHPRRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEI
                     IGNTDCAVEQGMPPLLCGKVSRDIKQEVEKLSGNPRVKKLRWFSECLSPPGGSDNLWD
                     LVAVIKGQDDSLLPQNYCKGIMHLKHLITFRTSEAQELTTVKMSKFGGGIGVPTKEER
                     LKEAAEIHLRLGQIRRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDK
                     DDVIPYCIATGDVKKLVHFFMSRGQLKEALLVAQAACEGNMQTFHVSTPKGSSYSDDI
                     YKEDFNELLQEACRELAEWYFQDGRAVLAACCHLAVDNIELAMAYLIRGNELELAVCV
                     GTVLGELAGPATHYALELLARKCMMIPTWNLAADLLLMTPDSELQLVKLCAFYPGCIE
                     EINDLHEKCKLPTVEECMQLAETAHADGNIFETIKYYLLSQEPEKALPIGIDFIKGSI
                     SSSNWTLDTIYPVLDLLSYVRTEKLLLHTCTEARNELLILCGYVGALLAIRRQYQSIV
                     PALYEYTSQLLKRRKVSVPIKIEHLSEELDAWRACTQSINRSSEESPYTSPSDSQRMV
                     YATLLKRLKEEPLRGIIGPDYVTGSNLPSHSDIHISCFTGLKIQGPVFFLEDGKSTIS
                     LNDALMWAKVNPFSPLGTGIRLNPF"
     misc_feature    66..1088
                     /gene="WDR17"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(66..68,123..125,135..137,153..158,192..197,252..254,
                     264..266,282..287,333..338,393..395,405..407,423..428,
                     486..488,540..542,555..557,573..578,618..623,675..677,
                     687..689,711..716,750..755,918..920,933..935,951..956,
                     993..998,1053..1055,1065..1067,1083..1088)
                     /gene="WDR17"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    78..194
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    210..329
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    348..479
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    501..611
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    633..788
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <891..1871
                     /gene="WDR17"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    891..995
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1008..1124
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1140..1253
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1269..1376
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1395..1511
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1527..1640
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1656..1769
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1785..1862
                     /gene="WDR17"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 tctgaggagt caggaagttg gatcaccgtt ataatgaatt caaacttcac gcaattatgt
       61 ctgaacataa aaaaacaatc acagctatct cttggtgtcc acataaccct gatctgtttg
      121 caagtggcag tactgataat ttcgtgatca tttggaatgt tgcagaacaa aaagtcattg
      181 ctaaactcga caatacaaaa gggacgcctg cctctctcag ctggtgctgg aatgcagatg
      241 acacagtggc gtttgcttcc cagagaggcc cactgttcct ctggaccatc tcaggaccgg
      301 acagtggcgt gactgtgcac aaagaagccc atagcttcct gtctgatatc tgtatattca
      361 gatggcatac ccagaaaaag gggaaagttg tctttggtca tattgatgga agtctatcaa
      421 tttttcaacc aggtagtaaa agtcagaaac atgttctgag acctgaatct cttgaaggga
      481 ccgacgcaga ggatcccgtt acagccctgg aatgggaccc actgtctact gattacctcc
      541 tagtggctaa tttgcatcgt ggaattcgcc tagtagattc ggaatcactt tgttgcataa
      601 caacatttaa ttttcccggt gcagtggctt ctgtgcaatg cttggcctgg gttcccggtg
      661 ctcctggcat gtttataact ggagattctc aagtcggtgt tttgcgcgtt tggaatgttt
      721 ctagggcaac acctgttgat aattttaaat taaagaaaac agggtttcac tgcttacatg
      781 tactgaattc tcctccaagg aagaaatttt caatccagtc cccaaccaaa aatcattata
      841 catcctcaac gagtgaagca gtaccacccc caactttgac acagtatcaa gcattttctg
      901 ttcctcctgg tcacgcagtg tgctgtttct tggatggtgg agttggactt tatgatatgg
      961 gagctaagaa gtgggatttt cttagggact tgggtcatgt ggaaactatc tttgactgca
     1021 aattcaaacc tgatgatccc aatcttttag caacagcttc atttgacggc acaataaaag
     1081 tctgggatat aaacacactg acggcagtgt acacttcccc agggaatgaa ggggttattt
     1141 attccctttc atgggctcca ggtgatttaa attgtattgc tggagcaact tctcgaaatg
     1201 gtgcttttat ttgggatatt aaaaagggca aaatcgtaca acgatttaat gagcatggaa
     1261 aaaatggaat attctgcatt gcctggagtc ataaagattc caaaagaata gcaacctgca
     1321 gtggtgatgg ttactgtatt attcgaacag ttgatggtaa agtactacac aaatacaaac
     1381 atccagctgc agtgtttggt tgtgattgga gccaaaacaa cagagacatg atagccactg
     1441 gctgtgaaga caaaaatgtt cgcgtctatt atgtggccac cagttccgat caaccactga
     1501 aagtgtttag tgggcataca gagaaagtgt tccatgttaa gtggtctcct ctgagggagg
     1561 gaattctttg cagtggctct gatgatggtt ctgttcgaat ctgggattat actaaagatg
     1621 catgcataaa cgttcttaga ggacacacgg cacctgtgcg gggattaatg tggaatactg
     1681 agatcccata cctactaata tctggcagct gggactatac tataaaagtg tgggacactc
     1741 gggaaggagc ttgtttggat accgtgtacg atcatggtgc agatgtatac ggcttagcat
     1801 gccacccacg tcgccccttc actatggcct cgtgctcccg ggactctact gtgagactct
     1861 ggtcattaac gccgttaatc actcctttac aaataaatat tctggcagat agatcctggg
     1921 aagaaattat cgggaacact gattgtgctg tagaacaagg catgccccct ctgctgtgtg
     1981 gcaaagtgtc aagagatatc aaacaggagg tagagaaact aagtggcaac cctcgtgtga
     2041 aaaaactaag atggttttca gaatgtttat cacctccggg tggcagtgac aatttatggg
     2101 acttagttgc tgtgataaaa gggcaagatg atagcttact tcctcagaac tactgtaaag
     2161 gaataatgca tttgaaacat ctgattacat tccgaacatc tgaagcccaa gaactaacca
     2221 cagtcaagat gtctaaattt ggtggtggta tcggtgtccc tactaaagag gaaaggctga
     2281 aggaagctgc tgaaatacac ttgcgattag gacagatccg gagatactgt gagctgatgg
     2341 tggaacttgg agagtgggac aaagccttgt cagttgcgcc aggggtgtct gtgaaatact
     2401 ggaagaagtt gatgcagagg agagctgatc agctaatcca ggaagataag gatgatgtca
     2461 ttccatactg catagccact ggcgatgtga aaaaattagt ccattttttt atgtcaagag
     2521 gtcagcttaa agaagctctg cttgttgcac aggctgcttg tgagggaaat atgcaaacct
     2581 tccatgtttc aacacctaaa ggatcttctt attctgatga tatctacaag gaagacttta
     2641 acgaactcct gcaggaagcc tgcagagagc tggcggaatg gtattttcag gatggccggg
     2701 cagtcctagc cgcgtgttgc cacctcgctg tggataatat cgagctggct atggcgtacc
     2761 tgattcgcgg aaacgagctg gagttggcag tctgtgtggg cacagtgctt ggagagctgg
     2821 caggacccgc aacccactat gctctcgagc tgctggcgag aaagtgcatg atgattccaa
     2881 cgtggaattt ggcagctgat cttctcctga tgactcctga tagcgaacta cagttagtaa
     2941 aactctgtgc tttctacccg gggtgtatcg aagagataaa tgatcttcat gagaagtgca
     3001 agctacccac agtagaagaa tgtatgcaat tagctgagac agcccatgcc gatggcaata
     3061 tatttgaaac tataaagtat tacttgttaa gtcaagaacc tgagaaagcc cttcctattg
     3121 gtattgactt catcaaagga tccatcagta gttcaaattg gactttggat accatttacc
     3181 ccgttcttga cctactgagt tatgttcgta ctgaaaaatt actcctgcat acatgtactg
     3241 aagctcgaaa cgaactgctg atactatgtg ggtacgttgg tgctttgctg gctatcagaa
     3301 gacagtacca aagcatcgtc ccggcccttt atgagtacac gagtcagcta ttgaaacgtc
     3361 ggaaggtgtc agtgcctata aaaatcgaac acctttcaga ggaattggat gcatggagag
     3421 cttgcacaca atccatcaac cgatcatcag aagaatctcc atatacatcc ccttctgatt
     3481 cacaaagaat ggtttatgca actttactga agagactaaa ggaagaacca ctcagaggaa
     3541 ttattggacc agattatgtg accgggtcaa acctaccgag tcattctgat attcacatct
     3601 cttgttttac gggattaaaa atccagggcc ctgtattttt ccttgaagat gggaaatcca
     3661 ccatctcctt gaatgacgct ctgatgtggg caaaggtgaa cccattctca cctctgggga
     3721 ctggaatacg actcaaccca ttttgacaga aggtttttct cacacttaat tgttttttta
     3781 aagaccgttt tccggttagt attaccttta acctttgttg tccaagagcc aaaggtctgg
     3841 aggaggaggt gggaagtggg gactcacagc tgattttatt cgttaagttc aacaaataaa
     3901 atatttatat aatttcaagg aaaaataggt gtctccttat ttgggaggaa ggtcatattt
     3961 aaattataaa ggactgacaa atctaaagga gcatatcaac ttttcacaaa aggtaccaaa
     4021 tattctattg ttgaaacact gaaacttata aagtagtgca acacctagag ccgtgcttga
     4081 cgtgcagccg gtgcctagag tatttgggtg actgagtatc ttgaagtgtc gaaatgtaag
     4141 gtgtgtacag ctgatcttca agttaacaaa cactggtatt gtcctctata aaatgtatag
     4201 taaaccacta gttttagctc atatttaatc gaagttttca gttgtaagtt taatatatat
     4261 atcaataaat gggtacgcaa agtacttttg agttttatct ttttaaagag aaaacattcc
     4321 caagttctgt agctgaaact caaatgtctc attataaagg aataggctac ataagcatga
     4381 aaaacattag aggtgaaaaa cgcaaaatgc agtgaaatct atgtgaaaat ttgcatctga
     4441 tgataattca ctagttaaaa agatatttgg aatttatgaa tattaatttt cattaatgta
     4501 tttaacattc acataatctc taatcaagtt acattataat atagttataa taaacaattt
     4561 atttgatgaa aatcagtttc aaataaattt ctgtaagtaa ataggttatt agttgaaatt
     4621 tgggatatat tatgtaaatt caagttttaa aaatatttat taaaatagtg catctgtcga
     4681 tatttttaaa aagcctgagg cgtgacgaca agtatttcaa ttgtactcga attctgactt
     4741 caaaatttac gaaatgaatg cacactagga agaatagtac tttgatactc aagctgtttt
     4801 acaagattta taatacaggt gttttgtcta attagggagt gagctcatat aactagaata
     4861 atggtggttt ttattatctt taaacttgtt gcatttaaag tactttaaaa tttttcttaa
     4921 gcttcttaaa acagaaaaca gtatatatta tgtacctgtc tatcacactg acctacttct
     4981 aactccacaa aaaaagcatt ttagccttaa attccatttt ataaagaaaa tagttaatat
     5041 tatagaagag aatgtataca actcagagat gcaatgggta atgtaaatcg tatctgagaa
     5101 gtacttttta acccttagtg atacgtgtaa ttcagatttc tttttttttt taggtgaggg
     5161 gtattattaa ttggcatata tgcactgaaa tctcctcact taaaaagtgg cagtctaaat
     5221 cctgctatca ttctctgttt tgttttaaaa tagattaaaa accctaatct gtgctttaaa
     5281 tacttcaaag gtactaagtt atacatatat aaacaattgt tacattcttc tgtatgttta
     5341 atgaatgcaa gaaataatat tttaatgtat aaagtatgaa aaagatctta caactcttta
     5401 gcacatgaag accattgagg tataacccag tatttgtcga aagcttaaat ttgattgatt
     5461 caaatgcaat tctgttattc cttgacttca acaatgttct ataccttaat attatgacta
     5521 ctaattcttc ataaaatgtc attgactgtg ttgatctgta tgtgtcttaa tatgaaaaac
     5581 aaaagtttta caaatttata aagttaaatt tcattgttat gtttagtatg catgaaaacc
     5641 caaacaaaga atgtgaactt gtttttattt gaatgtgtcc atattactga taatgtggac
     5701 aaattatttt gcaagtttaa gtatgctttt atgaaagaag tctcattaga caatgatttt
     5761 gataaaaact gcaattaaag ccag
//
LOCUS       XR_004347839            3992 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X9, misc_RNA.
ACCESSION   XR_004347839
VERSION     XR_004347839.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3992
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3992
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746670"
     misc_RNA        1..3992
                     /gene="WDR17"
                     /product="WD repeat domain 17, transcript variant X9"
                     /db_xref="GeneID:116746670"
ORIGIN      
        1 tccgcgccct tcagaccccg cggcccggcc gcgcagcctc ggagctcgcg gcgcaggagg
       61 agagggcggt gcgggtcggg tccggccgcc gcgcccgctt cagcaccttc cgctgtccgc
      121 cgctgcggtc gcctcgtcct gcaggtgctg accattctgg agccggtttc caattgcctt
      181 gattaaagta ggaacattct atggcttgga tgacttacat ttcacattgg tttgagcaag
      241 atgattgcta tgaaggacta caaagagcaa acatgtccca ggtaagacaa gtgggactgc
      301 tggctgctgg atgtcagcca tggaacaaag atgtgtgcgt tgccaatgga gacaggtttg
      361 cgtactgtgc taccctggcc atctatattt atcagttgga tcaccgttat aatgaattca
      421 aacttcacgc aattatgtct gaacataaaa aaacaatcac agctatctct tggtgtccac
      481 ataaccctga tctgtttgca agtggcagta ctgataattt cgtgatcatt tggaatgttg
      541 cagaacaaaa agtcattgct aaactcgaca atacaaaagg gacgcctgcc tctctcagct
      601 ggtgctggaa tgcagatgac acagtggcgt ttgcttccca gagaggccca ctgttcctct
      661 ggaccatctc aggaccggac agtggcgtga ctgtgcacaa agaagcccat agcttcctgt
      721 ctgatatctg tatattcaga tggcataccc agaaaaaggg gaaagttgtc tttggtcata
      781 ttgatggaag tctatcaatt tttcaaccag gtagtaaaag tcagaaacat gttctgagac
      841 ctgaatctct tgaagggacc gacgcagagg atcccgttac agccctggaa tgggacccac
      901 tgtctactga ttacctccta gtggctaatt tgcatcgtgg aattcgccta gtagattcgg
      961 aatcactttg ttgcataaca acatttaatt ttcccggtgc agtggcttct gtgcaatgct
     1021 tggcctgggt tcccggtgct cctggcatgt ttataactgg agattctcaa gtcggtgttt
     1081 tgcgcgtttg gaatgtttct agggcaacac ctgttgataa ttttaaatta aagaaaacag
     1141 ggtttcactg cttacatgta ctgaattctc ctccaaggaa gaaattttca atccagtccc
     1201 caaccaaaaa tcattataca tcctcaacga gtgaagcagt accaccccca actttgacac
     1261 agtatcaagc attttctgtt cctcctggtc acgcagtgtg ctgtttcttg gatggtggag
     1321 ttggacttta tgatatggga gctaagaagt gggattttct tagggacttg ggtcatgtgg
     1381 aaactatctt tgactgcaaa ttcaaacctg atgatcccaa tcttttagca acagcttcat
     1441 ttgacggcac aataaaagtc tgggatataa acacactgac ggcagtgtac acttccccag
     1501 ggaatgaagg ggttatttat tccctttcat gggctccagg tgatttaaat tgtattgctg
     1561 gagcaacttc tcgaaatggt gcttttattt gggatattaa aaagggcaaa atcgtacaac
     1621 gatttaatga gcatggaaaa aatggaatat tctgcattgc ctggagtcat aaagattcca
     1681 aaagaatagc aacctgcagt ggtgatggtt actgtattat tcgaacagtt gatggtaaag
     1741 tactacacaa atacaaacat ccagctgcag tgtttggttg tgattggagc caaaacaaca
     1801 gagacatgat agccactggc tgtgaagaca aaaatgttcg cgtctattat gtggccacca
     1861 gttccgatca accactgaaa gtgtttagtg ggcatacaga gaaagtgttc catgttaagt
     1921 ggtctcctct gagggaggga attctttgca gtggctctga tgatggttct gttcgaatct
     1981 gggattatac taaagatgca tgcataaacg ttcttagagg acacacggca cctgtgcggg
     2041 gattaatgtg gaatactgag atcccatacc tactaatatc tggcagctgg gactatacta
     2101 taaaagtgtg ggacactcgg gaaggagctt gtttggatac cgtgtacgat catggtgcag
     2161 atgtatacgg cttagcatgc cacccacgtc gccccttcac tatggcctcg tgctcccggg
     2221 actctactgt gagactctgg tcattaacgc cgttaatcac tcctttacaa ataaatattc
     2281 tggcagatag atcctgggaa gaaattatcg ggaacactga ttgtgctgta gaacaaggca
     2341 tgccccctct gctgtgtggc aaagtgtcaa gagatatcaa acaggaggta gagaaactaa
     2401 gtggcaaccc tcgtgtgaaa aaactaagat ggttttcaga atgtttatca cctccgggtg
     2461 gcagtgacaa tttatgggac ttagttgctg tgataaaagg gcaagatgat agcttacttc
     2521 ctcagaacta ctgtaaagga ataatgcatt tgaaacatct gattacattc cgaacatctg
     2581 aagcccaaga actaaccaca gtcaagatgt ctaaatttgg tggtggtatc ggtgtcccta
     2641 ctaaagagga aaggctgaag gaagctgctg aaatacactt gcgattagga cagatccgga
     2701 gatactgtga gctgatggtg gaacttggag agtgggacaa agccttgtca gttgcgccag
     2761 gggtgtctgt gaaatactgg aagaagttga tgcagaggag agctgatcag ctaatccagg
     2821 aagataagga tgatgtcatt ccatactgca tagccactgg cgatgtgaaa aaattagtcc
     2881 atttttttat gtcaagaggt cagcttaaag aagctctgct tgttgcacag gctgcttgtg
     2941 agggaaatat gcaaaccttc catgtttcaa cacctaaagg atcttcttat tctgatgata
     3001 tctacaagga agactttaac gaactcctgc aggaagcctg cagagagctg gcggaatggt
     3061 attttcagga tggccgggca gtcctagccg cgtgttgcca cctcgctgtg gataatatcg
     3121 agctggctat ggcgtacctg attcgcggaa acgagctgga gttggcagtc tgtgtgggca
     3181 cagtgcttgg agagctggca ggacccgcaa cccactatgc tctcgagctg ctggcgagaa
     3241 agtgcatgat gattccaacg tggaatttgg cagctgatct tctcctgatg actcctgata
     3301 gcgaactaca gttagtaaaa ctctgtgctt tctacccggg gtgtatcgaa gagataaatg
     3361 atcttcatga gaagtgcaag ctacccacag tagaagaatg tatgcaatta gctgagacag
     3421 cccatgccga tggcaatata tttgaaacta taaagtatta cttgttaagt caagaacctg
     3481 agaaagccct tcctattggt attgacttca tcaaaggatc catcagtagt tcaaattgga
     3541 ctttggatac catttacccc gttcttgacc tactgagtta tgttcgtact gaaaaattac
     3601 tcctgcatac atgtactgaa gctcgaaacg aactgctgat actatgtggg tacgttggtg
     3661 ctttgctggc tatcagaaga cagtaccaaa gcatcgtccc ggccctttat gagtacacga
     3721 ggcaggagag acttgcgaca gtgtggctgg gttagaaacg tgtcatccca gagagaggaa
     3781 cgcgagctcc gggacctgcc tgtactctgt ccctcagaac ccaccctctc acctctgtgc
     3841 ggacgactca cccttctgta ggcagtcagc tattgaaacg tcggaaggtg tcagtgccta
     3901 taaaaatcga acacctttca gaggaattgg atgcatggag agcttgcaca caatccatca
     3961 accgatcatc agaagaatct ccatatacat cc
//
LOCUS       XR_004347840            3978 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X10, misc_RNA.
ACCESSION   XR_004347840
VERSION     XR_004347840.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3978
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3978
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746670"
     misc_RNA        1..3978
                     /gene="WDR17"
                     /product="WD repeat domain 17, transcript variant X10"
                     /db_xref="GeneID:116746670"
ORIGIN      
        1 tccgcgccct tcagaccccg cggcccggcc gcgcagcctc ggagctcgcg gcgcaggagg
       61 agagggcggt gcgggtcggg tccggccgcc gcgcccgctt cagcaccttc cgctgtccgc
      121 cgctgcggtc gcctcgtcct gcaggtgctg accattctgg agccggtttc caattgcctt
      181 gattaaagta ggaacattct atggcttgga tgacttacat ttcacattgg tttgagcaag
      241 atgattgcta tgaaggacta caaagagcaa acatgtccca ggtaagacaa gtgggactgc
      301 tggctgctgg atgtcagcca tggaacaaag atgtgtgcgt tgccaatgga gacaggtttg
      361 cgtactgtgc taccctggcc atctatattt atcagttgga tcaccgttat aatgaattca
      421 aacttcacgc aattatgtct gaacataaaa aaacaatcac agctatctct tggtgtccac
      481 ataaccctga tctgtttgca agtggcagta ctgataattt cgtgatcatt tggaatgttg
      541 cagaacaaaa agtcattgct aaactcgaca atacaaaagg gacgcctgcc tctctcagct
      601 ggtgctggaa tgcagatgac acagtggcgt ttgcttccca gagaggccca ctgttcctct
      661 ggaccatctc aggaccggac agtggcgtga ctgtgcacaa agaagcccat agcttcctgt
      721 ctgatatctg tatattcaga tggcataccc agaaaaaggg gaaagttgtc tttggtcata
      781 ttgatggaag tctatcaatt tttcaaccag gtagtaaaag tcagaaacat gttctgagac
      841 ctgaatctct tgaagggacc gacgcagagg atcccgttac agccctggaa tgggacccac
      901 tgtctactga ttacctccta gtggctaatt tgcatcgtgg aattcgccta gtagattcgg
      961 aatcactttg ttgcataaca acatttaatt ttcccggtgc agtggcttct gtgcaatgct
     1021 tggcctgggt tcccggtgct cctggcatgt ttataactgg agattctcaa gtcggtgttt
     1081 tgcgcgtttg gaatgtttct agggcaacac ctgttgataa ttttaaatta aagaaaacag
     1141 ggtttcactg cttacatgta ctgaattctc ctccaaggaa gaaattttca atccagtccc
     1201 caaccaaaaa tcattataca tcctcaacga gtgaagcagt accaccccca actttgacac
     1261 agtatcaagc attttctgtt cctcctggtc acgcagtgtg ctgtttcttg gatggtggag
     1321 ttggacttta tgatatggga gctaagaagt gggattttct tagggacttg ggtcatgtgg
     1381 aaactatctt tgactgcaaa ttcaaacctg atgatcccaa tcttttagca acagcttcat
     1441 ttgacggcac aataaaagtc tgggatataa acacactgac ggcagtgtac acttccccag
     1501 ggaatgaagg ggttatttat tccctttcat gggctccagg tgatttaaat tgtattgctg
     1561 gagcaacttc tcgaaatggt gcttttattt gggatattaa aaagggcaaa atcgtacaac
     1621 gatttaatga gcatggaaaa aatggaatat tctgcattgc ctggagtcat aaagattcca
     1681 aaagaatagc aacctgcagt ggtgatggtt actgtattat tcgaacagtt gatggtaaag
     1741 tactacacaa atacaaacat ccagctgcag tgtttggttg tgattggagc caaaacaaca
     1801 gagacatgat agccactggc tgtgaagaca aaaatgttcg cgtctattat gtggccacca
     1861 gttccgatca accactgaaa gtgtttagtg ggcatacaga gaaagtgttc catgttaagt
     1921 ggtctcctct gagggaggga attctttgca gtggctctga tgatggttct gttcgaatct
     1981 gggattatac taaagatgca tgcataaacg ttcttagagg acacacggca cctgtgcggg
     2041 gattaatgtg gaatactgag atcccatacc tactaatatc tggcagctgg gactatacta
     2101 taaaagtgtg ggacactcgg gaaggagctt gtttggatac cgtgtacgat catggtgcag
     2161 atgtatacgg cttagcatgc cacccacgtc gccccttcac tatggcctcg tgctcccggg
     2221 actctactgt gagactctgg tcattaacgc cgttaatcac tcctttacaa ataaatattc
     2281 tggcagatag atcctgggaa gaaattatcg ggaacactga ttgtgctgta gaacaaggca
     2341 tgccccctct gctgtgtggc aaagtgtcaa gagatatcaa acaggaggta gagaaactaa
     2401 gtggcaaccc tcgtgtgaaa aaactaagat ggttttcaga atgtttatca cctccgggtg
     2461 gcagtgacaa tttatgggac ttagttgctg tgataaaagg gcaagatgat agcttacttc
     2521 ctcagaacta ctgtaaagga ataatgcatt tgaaacatct gattacattc cgaacatctg
     2581 aagcccaaga actaaccaca gtcaagatgt ctaaatttgg tggtggtatc ggtgtcccta
     2641 ctaaagagga aaggctgaag gaagctgctg aaatacactt gcgattagga cagatccgga
     2701 gatactgtga gctgatggtg gaacttggag agtgggacaa agccttgtca gttgcgccag
     2761 gggtgtctgt gaaatactgg aagaagttga tgcagaggag agctgatcag ctaatccagg
     2821 aagataagga tgatgtcatt ccatactgca tagccactgg cgatgtgaaa aaattagtcc
     2881 atttttttat gtcaagaggt cagcttaaag aagctctgct tgttgcacag gctgcttgtg
     2941 agggaaatat gcaaaccttc catgtttcaa cacctaaagg atcttcttat tctgatgata
     3001 tctacaagga agactttaac gaactcctgc aggaagcctg cagagagctg gcggaatggt
     3061 attttcagga tggccgggca gtcctagccg cgtgttgcca cctcgctgtg gataatatcg
     3121 agctggctat ggcgtacctg attcgcggaa acgagctgga gttggcagtc tgtgtgggca
     3181 cagtgcttgg agagctggca ggacccgcaa cccactatgc tctcgagctg ctggcgagaa
     3241 agtgcatgat gattccaacg tggaatttgg cagctgatct tctcctgatg actcctgata
     3301 gcgaactaca gttagtaaaa ctctgtgctt tctacccggg gtgtatcgaa gagataaatg
     3361 atcttcatga gaagtgcaag ctacccacag tagaagaatg tatgcaatta gctgagacag
     3421 cccatgccga tggcaatata tttgaaacta taaagtatta cttgttaagt caagaacctg
     3481 agaaagccct tcctattggt attgacttca tcaaaggatc catcagtagt tcaaattgga
     3541 ctttggatac catttacccc gttcttgacc tactgagtta tgttcgtact gaaaaattac
     3601 tcctgcatac atgtactgaa gctcgaaacg aactgctgat actatgtggg tacgttggtg
     3661 ctttgctggc tatcagaaga cagtaccaaa gcatcgtccc ggccctttat gagtacacga
     3721 ggcaggagag acttgcgaca gtgtggctgg gttagaaacg tgtcatccca gagagaggaa
     3781 cgcgagctcc gggacctgcc tgtactctgt ccctcagaac ccaccctctc acctctgtgc
     3841 ggacgactca cccttctgta ggcagctatt gaaacgtcgg aaggtgtcag tgcctataaa
     3901 aatcgaacac ctttcagagg aattggatgc atggagagct tgcacacaat ccatcaaccg
     3961 atcatcagaa gaatctcc
//
LOCUS       XR_004347841            3834 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X11, misc_RNA.
ACCESSION   XR_004347841
VERSION     XR_004347841.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3834
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3834
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746670"
     misc_RNA        1..3834
                     /gene="WDR17"
                     /product="WD repeat domain 17, transcript variant X11"
                     /db_xref="GeneID:116746670"
ORIGIN      
        1 tccgcgccct tcagaccccg cggcccggcc gcgcagcctc ggagctcgcg gcgcaggagg
       61 agagggcggt gcgggtcggg tccggccgcc gcgcccgctt cagcaccttc cgctgtccgc
      121 cgctgcggtc gcctcgtcct gcaggtgctg accattctgg agccggtttc caattgcctt
      181 gattaaagta ggaacattct atggcttgga tgacttacat ttcacattgg tttgagcaag
      241 atgattgcta tgaaggacta caaagagcaa acatgtccca ggtaagacaa gtgggactgc
      301 tggctgctgg atgtcagcca tggaacaaag atgtgtgcgt tgccaatgga gacaggtttg
      361 cgtactgtgc taccctggcc atctatattt atcagttgga tcaccgttat aatgaattca
      421 aacttcacgc aattatgtct gaacataaaa aaacaatcac agctatctct tggtgtccac
      481 ataaccctga tctgtttgca agtggcagta ctgataattt cgtgatcatt tggaatgttg
      541 cagaacaaaa agtcattgct aaactcgaca atacaaaagg gacgcctgcc tctctcagct
      601 ggtgctggaa tgcagatgac acagtggcgt ttgcttccca gagaggccca ctgttcctct
      661 ggaccatctc aggaccggac agtggcgtga ctgtgcacaa agaagcccat agcttcctgt
      721 ctgatatctg tatattcaga tggcataccc agaaaaaggg gaaagttgtc tttggtcata
      781 ttgatggaag tctatcaatt tttcaaccag gtagtaaaag tcagaaacat gttctgagac
      841 ctgaatctct tgaagggacc gacgcagagg atcccgttac agccctggaa tgggacccac
      901 tgtctactga ttacctccta gtggctaatt tgcatcgtgg aattcgccta gtagattcgg
      961 aatcactttg ttgcataaca acatttaatt ttcccggtgc agtggcttct gtgcaatgct
     1021 tggcctgggt tcccggtgct cctggcatgt ttataactgg agattctcaa gtcggtgttt
     1081 tgcgcgtttg gaatgtttct agggcaacac ctgttgataa ttttaaatta aagaaaacag
     1141 ggtttcactg cttacatgta ctgaattctc ctccaaggaa gaaattttca atccagtccc
     1201 caaccaaaaa tcattataca tcctcaacga gtgaagcagt accaccccca actttgacac
     1261 agtatcaagc attttctgtt cctcctggtc acgcagtgtg ctgtttcttg gatggtggag
     1321 ttggacttta tgatatggga gctaagaagt gggattttct tagggacttg ggtcatgtgg
     1381 aaactatctt tgactgcaaa ttcaaacctg atgatcccaa tcttttagca acagcttcat
     1441 ttgacggcac aataaaagtc tgggatataa acacactgac ggcagtgtac acttccccag
     1501 ggaatgaagg ggttatttat tccctttcat gggctccagg tgatttaaat tgtattgctg
     1561 gagcaacttc tcgaaatggt gcttttattt gggatattaa aaagggcaaa atcgtacaac
     1621 gatttaatga gcatggaaaa aatggaatat tctgcattgc ctggagtcat aaagattcca
     1681 aaagaatagc aacctgcagt ggtgatggtt actgtattat tcgaacagtt gatggtaaag
     1741 tactacacaa atacaaacat ccagctgcag tgtttggttg tgattggagc caaaacaaca
     1801 gagacatgat agccactggc tgtgaagaca aaaatgttcg cgtctattat gtggccacca
     1861 gttccgatca accactgaaa gtgtttagtg ggcatacaga gaaagtgttc catgttaagt
     1921 ggtctcctct gagggaggga attctttgca gtggctctga tgatggttct gttcgaatct
     1981 gggattatac taaagatgca tgcataaacg ttcttagagg acacacggca cctgtgcggg
     2041 gattaatgtg gaatactgag atcccatacc tactaatatc tggcagctgg gactatacta
     2101 taaaagtgtg ggacactcgg gaaggagctt gtttggatac cgtgtacgat catggtgcag
     2161 atgtatacgg cttagcatgc cacccacgtc gccccttcac tatggcctcg tgctcccggg
     2221 actctactgt gagactctgg tcattaacgc cgttaatcac tcctttacaa ataaatattc
     2281 tggcagatag atcctgggaa gaaattatcg ggaacactga ttgtgctgta gaacaaggca
     2341 tgccccctct gctgtgtggc aaagtgtcaa gagatatcaa acaggaggta gagaaactaa
     2401 gtggcaaccc tcgtgtgaaa aaactaagat ggttttcaga atgtttatca cctccgggtg
     2461 gcagtgacaa tttatgggac ttagttgctg tgataaaagg gcaagatgat agcttacttc
     2521 ctcagaacta ctgtaaagga ataatgcatt tgaaacatct gattacattc cgaacatctg
     2581 aagcccaaga actaaccaca gtcaagatgt ctaaatttgg tggtggtatc ggtgtcccta
     2641 ctaaagagga aaggctgaag gaagctgctg aaatacactt gcgattagga cagatccgga
     2701 gatactgtga gctgatggtg gaacttggag agtgggacaa agccttgtca gttgcgccag
     2761 gggtgtctgt gaaatactgg aagaagttga tgcagaggag agctgatcag ctaatccagg
     2821 aagataagga tgatgtcatt ccatactgca tagccactgg cgatgtgaaa aaattagtcc
     2881 atttttttat gtcaagaggt cagcttaaag aagctctgct tgttgcacag gctgcttgtg
     2941 agggaaatat gcaaaccttc catgtttcaa cacctaaagg atcttcttat tctgatgata
     3001 tctacaagga agactttaac gaactcctgc aggaagcctg cagagagctg gcggaatggt
     3061 attttcagga tggccgggca gtcctagccg cgtgttgcca cctcgctgtg gataatatcg
     3121 agctggctat ggcgtacctg attcgcggaa acgagctgga gttggcagtc tgtgtgggca
     3181 cagtgcttgg agagctggca ggacccgcaa cccactatgc tctcgagctg ctggcgagaa
     3241 agtgcatgat gattccaacg tggaatttgg cagctgatct tctcctgatg actcctgata
     3301 gcgaactaca gttagtaaaa ctctgtgctt tctacccggg gtgtatcgaa gagataaatg
     3361 atcttcatga gaagtgcaag ctacccacag tagaagaatg tatgcaatta gctgagacag
     3421 cccatgccga tggcaatata tttgaaacta taaagtatta cttgttaagt caagaacctg
     3481 agaaagccct tcctattggt attgacttca tcaaaggatc catcagtagt tcaaattgga
     3541 ctttggatac catttacccc gttcttgacc tactgagtta tgttcgtact gaaaaattac
     3601 tcctgcatac atgtactgaa gctcgaaacg aactgctgat actatgtggg tacgttggtg
     3661 ctttgctggc tatcagaaga cagtaccaaa gcatcgtccc ggccctttat gagtacacga
     3721 gctattgaaa cgtcggaagg tgtcagtgcc tataaaaatc gaacaccttt cagaggaatt
     3781 ggatgcatgg agagcttgca cacaatccat caaccgatca tcagaagaat ctcc
//
LOCUS       XR_004347842            3643 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WD repeat domain 17 (WDR17), transcript
            variant X12, misc_RNA.
ACCESSION   XR_004347842
VERSION     XR_004347842.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3643
                     /gene="WDR17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746670"
     misc_RNA        1..3643
                     /gene="WDR17"
                     /product="WD repeat domain 17, transcript variant X12"
                     /db_xref="GeneID:116746670"
ORIGIN      
        1 tccgcgccct tcagaccccg cggcccggcc gcgcagcctc ggagctcgcg gcgcaggagg
       61 agagggcggt gcgggtcggg tccggccgcc gcgcccgctt cagcaccttc cgctgtccgc
      121 cgctgcggtc gcctcgtcct gcaggtgctg accattctgg agccggtttc caattgcctt
      181 gattaaagta ggaacattct atggcttgga tgacttacat ttcacattgg tttgagcaag
      241 atgattgcta tgaaggacta caaagagcaa acatgtccca ggtaagacaa gtgggactgc
      301 tggctgctgg atgtcagcca tggaacaaag atgtgtgcgt tgccaatgga gacaggtttg
      361 cgtactgtgc taccctggcc atctatattt atcagttgga tcaccgttat aatgaattca
      421 aacttcacgc aattatgtct gaacataaaa aaacaatcac agctatctct tggtgtccac
      481 ataaccctga tctgtttgca agtggcagta ctgataattt cgtgatcatt tggaatgttg
      541 cagaacaaaa agtcattgct aaactcgaca atacaaaagg gacgcctgcc tctctcagct
      601 ggtgctggaa tgcagatgac acagtggcgt ttgcttccca gagaggccca ctgttcctct
      661 ggaccatctc aggaccggac agtggcgtga ctgtgcacaa agaagcccat agcttcctgt
      721 ctgatatctg tatattcaga tggcataccc agaaaaaggg gaaagttgtc tttggtcata
      781 ttgatggaag tctatcaatt tttcaaccag gtagtaaaag tcagaaacat gttctgagac
      841 ctgaatctct tgaagggacc gacgcagagg atcccgttac agccctggaa tgggacccac
      901 tgtctactga ttacctccta gtggctaatt tgcatcgtgg aattcgccta gtagattcgg
      961 aatcactttg ttgcataaca acatttaatt ttcccggtgc agtggcttct gtgcaatgct
     1021 tggcctgggt tcccggtgct cctggcatgt ttataactgg agattctcaa gtcggtgttt
     1081 tgcgcgtttg gaatgtttct agggcaacac ctgttgataa ttttaaatta aagaaaacag
     1141 ggtttcactg cttacatgta ctgaattctc ctccaaggaa gaaattttca atccagtccc
     1201 caaccaaaaa tcattataca tcctcaacga gtgaagcagt accaccccca actttgacac
     1261 agtatcaagc attttctgtt cctcctggtc acgcagtgtg ctgtttcttg gatggtggag
     1321 ttggacttta tgatatggga gctaagaagt gggattttct tagggacttg ggtcatgtgg
     1381 aaactatctt tgactgcaaa ttcaaacctg atgatcccaa tcttttagca acagcttcat
     1441 ttgacggcac aataaaagtc tgggatataa acacactgac ggcagtgtac acttccccag
     1501 ggaatgaagg ggttatttat tccctttcat gggctccagg tgatttaaat tgtattgctg
     1561 gagcaacttc tcgaaatggt gcttttattt gggatattaa aaagggcaaa atcgtacaac
     1621 gatttaatga gcatggaaaa aatggaatat tctgcattgc ctggagtcat aaagattcca
     1681 aaagaatagc aacctgcagt ggtgatggtt actgtattat tcgaacagtt gatggtaaag
     1741 tactacacaa atacaaacat ccagctgcag tgtttggttg tgattggagc caaaacaaca
     1801 gagacatgat agccactggc tgtgaagaca aaaatgttcg cgtctattat gtggccacca
     1861 gttccgatca accactgaaa gtgtttagtg ggcatacaga gaaagtgttc catgttaagt
     1921 ggtctcctct gagggaggga attctttgca gtggctctga tgatggttct gttcgaatct
     1981 gggattatac taaagatgca tgcataaacg ttcttagagg acacacggca cctgtgcggg
     2041 gattaatgtg gaatactgag atcccatacc tactaatatc tggcagctgg gactatacta
     2101 taaaagtgtg ggacactcgg gaaggagctt gtttggatac cgtgtacgat catggtgcag
     2161 atgtatacgg cttagcatgc cacccacgtc gccccttcac tatggcctcg tgctcccggg
     2221 actctactgt gagactctgg tcattaacgc cgttaatcac tcctttacaa ataaatattc
     2281 tggcagatag atcctgggaa gaaattatcg ggaacactga ttgtgctgta gaacaaggca
     2341 tgccccctct gctgtgtggc aaagtgtcaa gagatatcaa acaggaggta gagaaactaa
     2401 gtggcaaccc tcgtgtgaaa aaactaagat ggttttcaga atgtttatca cctccgggtg
     2461 gcagtgacaa tttatgggac ttagttgctg tgataaaagg gcaagatgat agcttacttc
     2521 ctcagaacta ctgtaaagga ataatgcatt tgaaacatct gattacattc cgaacatctg
     2581 aagcccaaga actaaccaca gtcaagatgt ctaaatttgg tggtggtatc ggtgtcccta
     2641 ctaaagagga aaggctgaag gaagctgctg aaatacactt gcgattagga cagatccgga
     2701 gatactgtga gctgatggtg gaacttggag agtgggacaa agccttgtca gttgcgccag
     2761 gggtgtctgt gaaatactgg aagaagttga tgcagaggag agctgatcag ctaatccagg
     2821 aagataagga tgatgtcatt ccatactgca tagccactgg cgatgtgaaa aaattagtcc
     2881 atttttttat gtcaagaggt cagcttaaag aagctctgct tgttgcacag gctgcttgtg
     2941 agggaaatat gcaaaccttc catgtttcaa cacctaaagg atcttcttat tctgatgata
     3001 tctacaagga agactttaac gaactcctgc aggaagcctg cagagagctg gcggaatggt
     3061 attttcagga tggccgggca gtcctagccg cgtgttgcca cctcgctgtg gataatatcg
     3121 agctggctat ggcgtacctg attcgcggaa acgagctgga gttggcagtc tgtgtgggca
     3181 cagtgcttgg agagctggca ggacccgcaa cccactatgc tctcgagctg ctggcgagaa
     3241 agtgcatgat gattccaacg tggaatttgg cagctgatct tctcctgatg actcctgata
     3301 gcgaactaca gttagtaaaa ctctgtgctt tctacccggg gtgtatcgaa gagataaatg
     3361 atcttcatga gaagtaatga attcatagac tcagatctcc actttgtggc atttcggaat
     3421 gtcaaagcta aaaacgttga gagcttgtcc tactcgaaat aaagttgctt tgtctcaagg
     3481 ccaagtgaaa gtaaatcact gtgtagagaa cactgcaagc tacccacagt agaagaatgt
     3541 atgcaattag ctgagacagc ccatgccgat ggcaatatat ttgaaactat aaagtattac
     3601 ttgttaagtc aagaacctga gaaagccctt cctattggta ttg
//
LOCUS       XM_032618223            4230 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spermatogenesis associated 4 (SPATA4),
            mRNA.
ACCESSION   XM_032618223
VERSION     XM_032618223.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4230
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4230
                     /gene="SPATA4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746672"
     CDS             25..951
                     /gene="SPATA4"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 4"
                     /protein_id="XP_032474114.1"
                     /db_xref="GeneID:116746672"
                     /translation="MAAAGLGGELLTLPTVPKSLSLAPRPAAPMRGRPKKCLVYPHPP
                     KRSRVSPSVLRWLQGLDLSFFPRNINRDFSNGFLIAEIFTVHYPWDLKLSSFKNGTSL
                     KVKLDNWAQLEKFLARKKLRLPKELIHGTIHCKAGVPEILIQEVYTLLTHREIKSIQD
                     DLVNFTDYSYQMQLPLVPRSTASKSIKDNIRLSELIGNPNKLNNERKVEFLFLLQMLQ
                     RKLSRKLNPKWFEVKPTVGESTFSHGPAQACGCKCNSVISKERVVPVCNGDNPLKEIH
                     MKRAGKRSSDSMKPIRSEAWKGDPEEHLCDGL"
     misc_feature    181..453
                     /gene="SPATA4"
                     /note="CH-like domain in sperm protein; Region: CH_2;
                     pfam06294"
                     /db_xref="CDD:461871"
ORIGIN      
        1 tgccatagaa acccagaaag cgccatggct gccgccggtc tgggaggaga gcttttgaca
       61 ctgccgacgg tacccaagtc actgtcactt gcgccacgtc cagccgctcc catgcgaggg
      121 aggcctaaga agtgtctggt ctatccgcat cccccgaaga ggtcccgcgt gtctccgtcg
      181 gttctgcgct ggctccaggg cctggatctc agcttcttcc ccagaaacat caacagggat
      241 ttttcaaatg gcttcctgat agcagaaata ttcactgtac actacccctg ggaccttaaa
      301 ttgtcatcct ttaaaaatgg aacttcttta aaagtcaagt tggataactg ggcgcagttg
      361 gaaaagttcc tggcaagaaa aaaacttaga ttacctaaag aactaatcca cggaacaatt
      421 cactgtaaag ccggagtacc tgaaatactg atacaggagg tgtacacctt gttaacacat
      481 cgagaaatta aaagtatcca ggatgacctt gtgaatttca cagactacag ttaccagatg
      541 cagttgcccc tggtccccag atcgacagct tcaaagtcta ttaaagataa cattaggtta
      601 tcagaattaa taggcaatcc gaacaagctc aataatgaac gtaaagtaga gttcctcttc
      661 cttttacaaa tgttgcaaag aaaattgagc agaaaactga atccaaaatg gtttgaggtc
      721 aaaccaacag tgggagaatc gactttcagt catggtcctg cccaagcctg tgggtgcaaa
      781 tgtaattcag tcatttcgaa ggaaagagtc gttcctgtgt gtaatggtga caatccactt
      841 aaagaaattc acatgaagcg agctggaaaa cgttcttctg actctatgaa acctatcaga
      901 tcagaagcat ggaaagggga cccagaagag cacctgtgtg atgggctttg aagaagcgat
      961 gccaccacct cttgccactc taaagggata ccgtcaccta gtcttggata tatgtcaata
     1021 ataagtaaat taaaggggtg tcttatctat agttgggctg aagaacgtat tttttaattc
     1081 aattcaacaa ccatttattc aacacctgca cctagtagcg ttgaaaatac aaaatcagtt
     1141 taattagtat agaatgaaca aaaataagtt taaaggtaca gttaaacata attcaccaag
     1201 acgggtgaga attctttctc ataaattttg taggaatggc gaatctactt tgtaatacgt
     1261 tttcctcact agaaagagaa gagccatgct acgaatatgc ctgttcatca tcaacaaaat
     1321 gtattctgaa tgattattgc tgttatacat aggcccccag aaaatcttgc ccacttccat
     1381 aaataacttt acttaagcca tcaaaaaaaa aatagtcatc tttcctgttg atactgagtt
     1441 gtggggaagg aaaatcatgg tttacttggt gtttagcaaa caatttagct tgatttaaaa
     1501 aaatgcctcc tgcttgctgc catgccccat atttttactg cagggagaca gaagcagtga
     1561 tatactgaaa gactgatgac agttcatata ttctcggtaa tttaaaattc atatttggaa
     1621 aatttccttc aagtggaatt attcacgttt ttatgctatc tcattaatag tgtcatttga
     1681 cttccaagat gagtattact aatgctgaat cccatgatat gcttgtcaat ttccaacaaa
     1741 actctattcg tctttctgca tttttgaagc cttagagagt ttaactcgaa tttctacctc
     1801 cagagacttc cttgtttaat cttacccttc tggataggta acatttagta aaagaaatta
     1861 acgagagccc tgatgaaatc gatgacttct tgggaaaggt ttagaagatt atgagaacaa
     1921 tttttaaacc ataaaatata gttccttagg aaaggatttt agaaacaagt cttctgaagc
     1981 tcagctagag aaacgtccag agaaaaggat tagatttgga taaacagtca aataataggt
     2041 ttctttattc tcttgactct gttcaatctc ctgaaaaagc tactcactca tggcctgacc
     2101 ttggttaagt tcccaagacc cctgtgggac ctacggagag ttttgaaaat acaggagagt
     2161 ctggaagctt catatcatag tgactaagga catgaaggaa gtggggatat ggtgaaagta
     2221 ggtaacgtca agagcttctt aagatgagat gtgtcaacag aagccaacac ttcaggcaaa
     2281 tctaaggaag gtcattttct tcacaaagtt tcttcacaaa gatctttgac acaaggaagc
     2341 agtgagctat tctcggagct acagcagccc ctataggaac agaacctttc aatcgattgg
     2401 cagaatgctc atcccgggaa tggaagcttc tgtgatgtgc tgtttatatt aattagtaag
     2461 cctctttttg ctctctttta tactaattct ctcttctata ctaattctct cttgtatact
     2521 aaacactgta gtcagtgttt ctcacaagtg gagactcacc ctcctgaaca gcccaatcac
     2581 atgatttttc taggtttcta agcagggtca taacccagat ggacggcgca gctcttcata
     2641 cctctgatga ctttaaccca gaatttagcg agagatggtg tcctctcact ggtggttcta
     2701 gggacgagac tgattgtgtc atcttagcag ttcactgtgt catacctggc tttaattgca
     2761 gtttttatca aaatcattgt ctaatgagac ttctttcata aaagcatact taaacttgca
     2821 aaataatttg tccacattat cagtaatatg gacacattca aataaaaaca agttcacatt
     2881 ctttgtttgg gttttcatgc atactaaaca taacaatgaa atttaacttt ataaatttgt
     2941 aaaacttttg tttttcatat taagacacat acagatcaac acagtcaatg acattttatg
     3001 aagaattagt agtcataata ttaaggtata gaacattgtt gaagtcaagg aataacagaa
     3061 ttgcatttga atcaatcaaa tttaagcttt cgacaaatac tgggttatac ctcaatggtc
     3121 ttcatgtgct aaagagttgt aagatctttt tcatacttta tacattaaaa tattatttct
     3181 tgcattcatt aaacatacag aagaatgtaa caattgttta tatatgtata acttagtacc
     3241 tttgaagtat ttaaagcaca gattagggtt tttaatctat tttaaaacaa aacagagaat
     3301 gatagcagga tttagactgc cactttttaa gtgaggagat ttcagtgcat atatgccaat
     3361 taataatacc cctcacctaa aaaaaaaaag aaatctgaat tacacgtatc actaagggtt
     3421 aaaaagtact tctcagatac gatttacatt acccattgca tctctgagtt gtatacattc
     3481 tcttctataa tattaactat tttctttata aaatggaatt taaggctaaa atgctttttt
     3541 tgtggagtta gaagtaggtc agtgtgatag acaggtacat aatatatact gttttctgtt
     3601 ttaagaagct taagaaaaat tttaaagtac tttaaatgca acaagtttaa agataataaa
     3661 aaccaccatt attctagtta tatgagctca ctccctaatt agacaaaaca cctgtattat
     3721 aaatcttgta aaacagcttg agtatcaaag tactattctt cctagtgtgc attcatttcg
     3781 taaattttga agtcagaatt cgagtacaat tgaaatactt gtcgtcacgc ctcaggcttt
     3841 ttaaaaatat cgacagatgc actattttaa taaatatttt taaaacttga atttacataa
     3901 tatatcccaa atttcaacta ataacctatt tacttacaga aatttatttg aaactgattt
     3961 tcatcaaata aattgtttat tataactata ttataatgta acttgattag agattatgtg
     4021 aatgttaaat acattaatga aaattaatat tcataaattc caaatatctt tttaactagt
     4081 gaattatcat cagatgcaaa ttttcacata gatttcactg cattttgcgt ttttcacctc
     4141 taatgttttt catgcttatg tagcctattc ctttataatg agacatttga gtttcagcta
     4201 cagaacttgg gaatgttttc tctttaaaaa
//
LOCUS       XM_032618227            1985 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 8 (UBXN8), transcript
            variant X1, mRNA.
ACCESSION   XM_032618227
VERSION     XM_032618227.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1985
                     /gene="UBXN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746673"
     CDS             38..865
                     /gene="UBXN8"
                     /codon_start=1
                     /product="UBX domain-containing protein 8 isoform X1"
                     /protein_id="XP_032474118.1"
                     /db_xref="GeneID:116746673"
                     /translation="MASRGVVGVFLLAALPLLCLELQRGTPDLGIKDLILLCGRIFLL
                     LTLLTLIISVTTSWVNSFKSSQVYLKEEEEKNEKRQKLVRKKQQEAQGEKASRYIENV
                     LKPHQEMKLKKLEERFYHMTGETWKLSNGHKLGGDEDLVLESESQTSSETSNREAAKR
                     RNLPKPVTKVSPPAEQPTQKEVLDLPEEPPEIAEEVVTVALRCPSGRVPRRRFFKSCS
                     SQVLFDWMMKSGYHTSLYSLSTSFPRRALELERGWSLQDVGITVDTVLNVEEKEQSN"
     misc_feature    623..847
                     /gene="UBXN8"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; Region:
                     Ubl1_cv_Nsp3_N-like; cl28922"
                     /db_xref="CDD:475130"
ORIGIN      
        1 ggcgggcctt ccgcccggaa gcgcggcgcc ctccactatg gcttctcgtg gcgttgttgg
       61 cgttttcctc cttgctgctc tcccgctctt gtgtttggag ctccagcgtg ggaccccaga
      121 tctgggaatc aaagatctga ttttgctgtg tggccggatt ttcttactgc ttactctcct
      181 tacgttaatt atttctgtga ctacctcatg ggttaactcg tttaaatctt cccaagttta
      241 tctgaaagaa gaagaagaga agaatgagaa aaggcaaaaa cttgtgagga agaaacaaca
      301 agaggcacag ggtgaaaagg ccagcagata catagagaat gttctaaaac cacaccagga
      361 aatgaaattg aaaaagctgg aagaacgctt ttatcatatg acgggtgaaa cctggaagtt
      421 aagcaatggt cataaacttg ggggtgatga agatttggtg cttgaaagtg agagtcaaac
      481 atcttctgaa acatcaaaca gagaagcagc aaagagacgg aacttgccta agcctgtaac
      541 caaagtttca ccacccgctg aacagcccac gcagaaggag gttcttgatt tacctgagga
      601 gcctcctgaa atagctgaag aagtcgtgac tgttgctctt cgatgtccaa gtgggcgtgt
      661 cccgaggaga aggtttttta agtcttgcag ttcacaggtc ttgtttgact ggatgatgaa
      721 aagtgggtac cacacatccc tatacagcct ttctacttcc tttcccagaa gggctctgga
      781 actggagaga ggctggtcac tgcaggacgt aggaataact gtggatactg tactcaacgt
      841 ggaagagaaa gaacagagca actagttaag aaatgcgaac cacctgttct ccatgaagtc
      901 agttatgccg tgaccttaca ggacaataaa ggattcacat gaaaatcatg ccataccttg
      961 attgcactca aggcagtaaa cactttaatg ttgatctcca tggaaatata tggacataaa
     1021 ggattagaaa aggactgctc tctgcatata ataatttttg gagtgtgcca tcttacagtg
     1081 taccaaatga gaacgagata gaaatatata cagtaaggtg ctcgttcatt tgtatttttg
     1141 ctagctgatg ccatttatca gtttctgcct cttccgtctg ttttgccaca ttgaacattt
     1201 cacagttcag ccaagctctt taaagtctta tcagccagaa tgttttttct gctgtaattc
     1261 tagaaattaa actttgaagg catgtcaaag ctcttttaag gctttaaagt tctttttgat
     1321 agtaaacatt gtaggtacta atgttaacta atgtttgaga tttatttcat tttgtcttgc
     1381 actgaagtgt aacatttaca acattccagg tggatcagta tttttaaaga taaaacaatg
     1441 aaaccagtgt aggtgagttt ttaaaatata tctggtcatt tcatttccct gcttatactc
     1501 ctgtaatggt gcatccacgg actgtaatgc caagtccaaa ctccaaggct ggtataaagg
     1561 ctctttgttc tagccacgcc ctttctcttt cccatctgtc ttaaggagtc agtttaagtt
     1621 ggttccactg tgtattgccc tttatttaat gctcctttat tcctcttctg tagaatttat
     1681 tacatgtatt atagctgtgt ttttgtcttc ccaaatacat aattccttaa aagcaaggat
     1741 tatatccttt ttttcccctg cagaaatacc tagtgtctag taatgcttca tacaaaatgt
     1801 ttgaaaataa taagttgtct caacctttac ctttttttgt ctctggaatg ttccacattg
     1861 aaaaagatga aaaagaattc tgattataaa ttaattataa aagcattggg aaaccaagtt
     1921 acagaaacaa aaataaaatc acccataatc tcaatagcca gaaataaaca tgactgacat
     1981 tacga
//
LOCUS       XM_032618228            1890 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UBX domain protein 8 (UBXN8), transcript
            variant X2, mRNA.
ACCESSION   XM_032618228
VERSION     XM_032618228.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1890
                     /gene="UBXN8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746673"
     CDS             18..770
                     /gene="UBXN8"
                     /codon_start=1
                     /product="UBX domain-containing protein 8 isoform X2"
                     /protein_id="XP_032474119.1"
                     /db_xref="GeneID:116746673"
                     /translation="MASRGVVGVFLLAALPLLCLELQRGTPDLGIKDLILLCGRIFLL
                     LTLLTLIISVTTSWVNSFKSSQVYLKEEEEKNEKRQKLVRKKQQEAQGEKASRYIENV
                     LKPHQEMKLKKLEERFYHMTGETWKLSNGHKLGGDEDLVLESESQTSSETSNREAAKR
                     RNLPKPVTKVSPPAEQPTQKEVLDLPEEPPEIAEEVLFDWMMKSGYHTSLYSLSTSFP
                     RRALELERGWSLQDVGITVDTVLNVEEKEQSN"
     misc_feature    <603..752
                     /gene="UBXN8"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; Region:
                     Ubl1_cv_Nsp3_N-like; cl28922"
                     /db_xref="CDD:475130"
ORIGIN      
        1 gcgcggcgcc ctccactatg gcttctcgtg gcgttgttgg cgttttcctc cttgctgctc
       61 tcccgctctt gtgtttggag ctccagcgtg ggaccccaga tctgggaatc aaagatctga
      121 ttttgctgtg tggccggatt ttcttactgc ttactctcct tacgttaatt atttctgtga
      181 ctacctcatg ggttaactcg tttaaatctt cccaagttta tctgaaagaa gaagaagaga
      241 agaatgagaa aaggcaaaaa cttgtgagga agaaacaaca agaggcacag ggtgaaaagg
      301 ccagcagata catagagaat gttctaaaac cacaccagga aatgaaattg aaaaagctgg
      361 aagaacgctt ttatcatatg acgggtgaaa cctggaagtt aagcaatggt cataaacttg
      421 ggggtgatga agatttggtg cttgaaagtg agagtcaaac atcttctgaa acatcaaaca
      481 gagaagcagc aaagagacgg aacttgccta agcctgtaac caaagtttca ccacccgctg
      541 aacagcccac gcagaaggag gttcttgatt tacctgagga gcctcctgaa atagctgaag
      601 aagtcttgtt tgactggatg atgaaaagtg ggtaccacac atccctatac agcctttcta
      661 cttcctttcc cagaagggct ctggaactgg agagaggctg gtcactgcag gacgtaggaa
      721 taactgtgga tactgtactc aacgtggaag agaaagaaca gagcaactag ttaagaaatg
      781 cgaaccacct gttctccatg aagtcagtta tgccgtgacc ttacaggaca ataaaggatt
      841 cacatgaaaa tcatgccata ccttgattgc actcaaggca gtaaacactt taatgttgat
      901 ctccatggaa atatatggac ataaaggatt agaaaaggac tgctctctgc atataataat
      961 ttttggagtg tgccatctta cagtgtacca aatgagaacg agatagaaat atatacagta
     1021 aggtgctcgt tcatttgtat ttttgctagc tgatgccatt tatcagtttc tgcctcttcc
     1081 gtctgttttg ccacattgaa catttcacag ttcagccaag ctctttaaag tcttatcagc
     1141 cagaatgttt tttctgctgt aattctagaa attaaacttt gaaggcatgt caaagctctt
     1201 ttaaggcttt aaagttcttt ttgatagtaa acattgtagg tactaatgtt aactaatgtt
     1261 tgagatttat ttcattttgt cttgcactga agtgtaacat ttacaacatt ccaggtggat
     1321 cagtattttt aaagataaaa caatgaaacc agtgtaggtg agtttttaaa atatatctgg
     1381 tcatttcatt tccctgctta tactcctgta atggtgcatc cacggactgt aatgccaagt
     1441 ccaaactcca aggctggtat aaaggctctt tgttctagcc acgccctttc tctttcccat
     1501 ctgtcttaag gagtcagttt aagttggttc cactgtgtat tgccctttat ttaatgctcc
     1561 tttattcctc ttctgtagaa tttattacat gtattatagc tgtgtttttg tcttcccaaa
     1621 tacataattc cttaaaagca aggattatat cctttttttc ccctgcagaa atacctagtg
     1681 tctagtaatg cttcatacaa aatgtttgaa aataataagt tgtctcaacc tttacctttt
     1741 tttgtctctg gaatgttcca cattgaaaaa gatgaaaaag aattctgatt ataaattaat
     1801 tataaaagca ttgggaaacc aagttacaga aacaaaaata aaatcaccca taatctcaat
     1861 agccagaaat aaacatgact gacattacga
//
LOCUS       XM_032618229            1598 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 catalytic subunit
            beta (PPP2CB), mRNA.
ACCESSION   XM_032618229
VERSION     XM_032618229.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1598
                     /gene="PPP2CB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 10 long SRA reads, 55
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746674"
     CDS             43..972
                     /gene="PPP2CB"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A
                     catalytic subunit beta isoform"
                     /protein_id="XP_032474120.1"
                     /db_xref="GeneID:116746674"
                     /translation="MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESN
                     VQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVA
                     LKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD
                     GQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGY
                     TFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIM
                     ELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL"
     misc_feature    67..921
                     /gene="PPP2CB"
                     /note="PP2A, PP4, and PP6 phosphoprotein phosphatases,
                     metallophosphatase domain; Region: MPP_PP2A_PP4_PP6;
                     cd07415"
                     /db_xref="CDD:277360"
     misc_feature    order(193..195,241..243,250..255,259..264,268..270,
                     274..279,313..315,358..372,403..408,415..420,430..435,
                     442..447,469..471,844..846,871..873,901..903,919..921)
                     /gene="PPP2CB"
                     /note="heterotrimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277360"
     misc_feature    order(211..213,217..219,295..297,307..309,391..396,
                     406..411,421..423,541..543,607..615,640..642,679..687,
                     763..765,769..771,841..849)
                     /gene="PPP2CB"
                     /note="active site"
                     /db_xref="CDD:277360"
     misc_feature    order(211..213,217..219,295..297,391..393,541..543,
                     763..765)
                     /gene="PPP2CB"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:277360"
ORIGIN      
        1 gggagggggg cgggaggcag cgggggaggg gctcgggcca ccatggacga caaggcgttc
       61 accaaggagc tggaccagtg ggtcgagcag ctgaacgagt gtaaacaact gaacgagaac
      121 caggtgcgga cgctgtgcga aaaggctaag gaaattttaa caaaagaatc aaatgtgcaa
      181 gaggtccgtt gtcctgttac cgtctgtgga gatgtgcatg gtcaattcca tgatcttatg
      241 gaactcttta gaatcggtgg gaagtcacca gatacaaact atctattcat gggtgactat
      301 gtagacagag gttattattc tgtggagact gtgactcttc ttgtggcatt aaaggtgcgt
      361 tacccagaac gtattacaat attgagagga aaccacgaaa gccgacaaat tacccaagta
      421 tatggctttt atgatgaatg tctgcgaaag tatgggaatg ccaatgtttg gaaatacttt
      481 acagatctgt ttgactatct gccacttaca gctttagtag atgggcagat attctgcctc
      541 catggtggcc tctccccatc catagataca ctggatcata taagagccct ggatcgttta
      601 caagaagttc cacatgaggg cccaatgtgt gatctgttat ggtcagatcc agatgatcgt
      661 ggtgggtggg gtatttcacc acgcggcgct ggctacacat ttggacaaga tatttctgaa
      721 acgtttaacc atgccaacgg tctcacactg gtttctcgtg ctcaccaact tgtaatggag
      781 ggatacaatt ggtgtcacga tcggaacgtg gttaccattt tcagcgcgcc gaattactgt
      841 taccgttgtg ggaaccaggc cgccatcatg gaactagatg acactttgaa gtattccttc
      901 cttcagtttg acccagcacc tcgtcgtgga gagcctcacg tgacccggcg caccccagac
      961 tactttctgt aaattcctcc agggaaaacc tgcctttgta tgtggaagta tacctggctt
     1021 tttaaaatat atatatttag aaacaaaaca aaaaaaagca acagtaatct gtgtgtttct
     1081 ctaacaaatt gggatctgtc ttggcattaa accatatcat ggaccaaact gtgccatact
     1141 aatgatgagc atttagcaca acttgagact gaaattagtt caacactatg ttctagatcg
     1201 gtcggtctta acagtttgcc tgctgtgttt gtagtaacca ttttccttgg gactgttcaa
     1261 gcagaaaagg taactaactc catctccttt tgcacttact tggaaatttt agttagagtg
     1321 tttaactggc atggattaat agggttggat ttttattttt aagaaaaatt cacaagctaa
     1381 cttccactta attcattact gtgtatttta ttgaattgta taattaactg aaaaaaagat
     1441 tcttgggagt acgttgtcat aacatttaaa gagatttccc ttcctttaaa ctaaattact
     1501 attttatgtt gatctgcata tttctgtata tttgtcatga cagtgcttgc attctatttg
     1561 gtgtactgag caaataaact ttccatttta aacaaaaa
//
LOCUS       XR_004347843            5213 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746675
            (LOC116746675), ncRNA.
ACCESSION   XR_004347843
VERSION     XR_004347843.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5213
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5213
                     /gene="LOC116746675"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746675"
     ncRNA           1..5213
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746675"
                     /product="uncharacterized LOC116746675"
                     /db_xref="GeneID:116746675"
ORIGIN      
        1 agtggggtgt aggggaagag actagcctta atgagttcat tgttcagcta gctgaaattg
       61 agatcctgaa aatagcaagt tctaaaccat acagcagttt tggacttcca cttaggatct
      121 gaagaaatcc acttagaaag ctgcaaaaaa tgtttctccc accctgacaa gaaacggctg
      181 gatgacagac aaaagcgtta cgtttttgag ccctcaggtg actgaggctg cgaggtagac
      241 acagaaactg aattccgaag agggaaaatc cactgagagg agagacgggg cacgcagact
      301 ctcttctgtc tcacatcaat gggagaaaag gtagctgcta tataagcagg taagaaaaat
      361 ttagccaaga ttttaacatt tgtaaaagcc aagcgtgggc tattgcatca gtttggaacg
      421 ggactggcta cttaatttgt gggtcttggc acgaaatgaa aatacgagaa cccttgctca
      481 aaaatgaaga cttcaggatg gtgacagcag agcatgaaac cagacgcaag gaccttctaa
      541 gcgtgggctg ttcgtgagtg cacaggtcat gtgccttgaa gccagtgctc agacgcaaag
      601 gcggttccca ctcacctgaa agctgttcgc cgtccctccg ccttcaccag gtgtccgcga
      661 gaaggagaga gaacattgcc gacctccgtg caaacgagga ggtgattggt gcctgcgcag
      721 gaacaagctc aaagccccac gagcttcccg ggatccttct cccccgcaga gccgaaatct
      781 taaggtgctg ggggtggtac accaggtact gtggcctcag gacactggca aagatttact
      841 gtttgtagag aaacagtaaa agcaaaaccc accttcctct tccaggacgc aagcaaaacc
      901 cgccttcctc ttccaggacg caggcgaaga cttgttgctg ctgggggcag ggtagaagca
      961 gaaagtctct gctgctgggg gaggggcaga tacagatacc agatgatggc tgtcctgcta
     1021 cgggtggcgc aaagaacaag caccccagac ccaccacagt tatcagcccg agtttggagg
     1081 ccacaggtag gaggaacagg aatgccaaga aaacctcacc cctgaagcca aagtacaaag
     1141 ggcctgcctg agatttgagg ccgaattgga acaaacagcg tgtcacctgc tcctaccacg
     1201 agtttagcac ccagccacaa gcaacagctg tctacaaccg ggggcggggt cagagcatgg
     1261 aggaggaccc tctctctgat acaggtcctt aaggtgtaca tttaggttat ggaggctgga
     1321 agttggagat cagggtgcca gcatgggtga gttctggtga gagccccctt ctgggttata
     1381 tattgtcaac ttctaattct atctgacttt taatacaggc atttacagct ataaatttcc
     1441 ctgcaaacac tgctttcact gtatcccaca ggttttggta cactgtgttt tcattttcac
     1501 tcatctcaaa gtatcttctc atttccctgg tgatttcttc tttgaccacc ccccccgcca
     1561 caaaggttat ttaggagtgt cttagtttgt acctatttgt atattttcca gtttttcttt
     1621 tgttattgat ttctgatttc atcccacagt gtttggagaa catactttgt atgactccaa
     1681 tcttaaatgt tctcaggctt agggtttata gccaagcaca tggtcactgt tggagaatgt
     1741 tccgtgtgcg tttgagaaaa ctctgtgttc tgctattgcc tggtggagtg ttctgcagat
     1801 gtgaggggta aagttgtagt gttcttcaag tcttctattt ccttgctgat cttctgtcta
     1861 gttctgttat tgcaggtggc ataataaagt ctccaactat ttttgtttgt ctgtttcttc
     1921 cttcaattct gttcatttct gctccgtata ttctagggct ccactgttaa gtgcatatgt
     1981 ttatgatata ttttcctaat agtctgactc tttatcattg tgaagtgttc ttctttattt
     2041 ctagtaacag tttttggttt gaaatctgtt tggtctggta ttagtatatc cagtccagca
     2101 ctgttatggt tactatttgc atgatgtatc ttttctcacc attttatttt taacctattt
     2161 ttgtttttga atctaaatta tgtttcctgt agacattata aagctagata ttaaaaacaa
     2221 aaacaccaac ttgataattt ctgtcctttg attgcattgt gttgatgact cattcagtgt
     2281 tattgatatg actggattta tacctgccat tttcttttct ttttttaaat atgcctttct
     2341 ttgtttattg gttcctgctt taactctttc tttttagtaa aatattattt tctaacatag
     2401 tatttaaatt cctttaatga ctttaccatt atttttcttt tttagtggtt gctctggaac
     2461 tcagaataca caacttagga aattctactt cagatttata aattctagtg atttaagagg
     2521 tatttactcc tagatagcat atagctcctt tccatttccc gtttttggta ttgctgttat
     2581 acacagtata tgttacaaac cccaaaatta ttatatacac tttttaatat aattactata
     2641 atatataatt actattttat atactcttat gaccctgaag aagctgagag agaagaagag
     2701 tgagtgtata tttatacatt ttgttaaata accttctcat ttgtattttc ttcatattct
     2761 tcctttaatt caagttacca tctggcgtta cttccttctt tagtaccgct ttgttcccac
     2821 ccacctcctc tgtgctgtta ctatcaaatc tatgactgca tttctatata ttctgtttct
     2881 tttaagttca attatactac aaatatatcc ttactgtgtc atgcaactgg attttaaatc
     2941 agttaagaag gtgcaattct accatcttct actattacta ccttgtgtgt acagctgact
     3001 tactttctgg tatcatttgc tttcagcctg aagtgctccc tctactatat cttgtatggc
     3061 tggtctgcca gcattgaatt ccctccattt ttgtttatct gggtatgccc ttcttttgtg
     3121 ttcattctga agttgtgctg gatatgacct tggtttttta ttttcagcac tttgagtatg
     3181 tttcattgcc tgtctgagga aatgtcagct gattattcga ttgaggttcc ctcttgtaag
     3241 tcatttttct cttactgcct tcaagattat ttcttttaga ccctcaacat tttgaccatg
     3301 atgtgtccga ctgctcctgt gtgggtacag cctaatgtac gtgcacagcc atcttgtctc
     3361 ccagagttga ctgtgatgat ctcaggaaag ctcttcttca ctatctcttt ccctgctttt
     3421 acctgttaaa gttctccttg ctctcctctt ttgcttgttg ctactagtat catgggagct
     3481 atgagagcct tcttcattgg tctccaccat aatacccact gtcttcaaca aaatacttag
     3541 gcgtgcaatt cttgaccctc tgttctaagt aaggtcagcc ccctcaggca gaggtaagga
     3601 actttttgtt ctacatcttt ctctgaacag aacttctatg ccactgttcc ggagttgcag
     3661 gcaggtataa tggcccactt cttagtgaca tcccctgttc tagagtaggc actgaggcaa
     3721 gaactgggga gacagcattc tctgcctgcc acacatgact ggaacagagc ctccacacta
     3781 ggagccaggg aggggaaggg agtctcagcc tgaccgactg cacccactgg gagcagagcc
     3841 tctgtaaccc tggactggga cagtctgtgg tatcatcatg ttttagataa atcccaaata
     3901 atgcgtgagt tttttatcca atttgagact ctcagtattt taggtaagta aaaatttgta
     3961 tccattcaca ttccttatga ttataatgag gtttatcttt actgtacaaa tctacgttct
     4021 ttattaccat gctgttaccc cttcttgcct ctgttgggtt agtgaaattt tctctaacat
     4081 cttgaagcca ctccctactg gtttggaagg attatattct atttatattc ctttaatgtt
     4141 taaagaacag taacatcatg gtagagaaat gtggcaggca ccaccttaac taagtgatcc
     4201 aagttagttc atagcaccag cactggggaa gatcccatga cctgatacga tgtgccgaga
     4261 aggacacatc atcatactgt gatatgcccg cccaaagtgc acatcccgaa tcataaggga
     4321 acatcagcca aaccataaat gaaggctatt tctacaaaat aaaattgctt gtcgtcttca
     4381 aaaatgtcaa gattatgcaa aacaaaggaa atctgaggaa tttccacatc cgaggggact
     4441 gaatacagca tgatcctgga taagattata ggtgcccaca cattattaaa ttttgctatt
     4501 aaaaaattct gctattaaaa aattctgcta taaaggacat tggtgagata ataaaaattt
     4561 aactaaagcg tttatagact taaacatttt ttttattatt ttattttttt ggccgtgctg
     4621 cgaggcttgt gggatcttag ttccctgacc agggatcaaa cttgtgtccc ctgcagtgga
     4681 agcacagagt cttaaccact ggaccatcag ggaattccct gaataaagca cttagataat
     4741 ggtactatat caatgaaaat ttcctgacct tgataactat actgtggtta tttaggagaa
     4801 agtccttatt tttacaaaac acacatggaa atttgcatgt aaaggaggat ctcaccttca
     4861 gctgacgttc aaacagctaa aaaaaaaagt aatgtgtgag gggaaagggg aataggaagg
     4921 gagagagaat gataaagcaa atattaaaat atttatattt taggaatctg agtgtaggac
     4981 agaaaggaat tttttgttac tatttttttg caatttttct tgaagtctaa attaattaca
     5041 gaagtgagat ataatttcgc tttggccaac tagtactttc cctacttgct aaaatcagcc
     5101 aagtgttttt tcctttcatt taggtaatgg ggaggaatgt ttctgacatt ctaagtcatg
     5161 aagctttatt agagagacat ttatttgaaa cagagatcat catcctataa gaa
//
LOCUS       XM_032618230            1743 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vascular endothelial growth factor C
            (VEGFC), mRNA.
ACCESSION   XM_032618230
VERSION     XM_032618230.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1743
                     /gene="VEGFC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 12 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746676"
     CDS             123..1391
                     /gene="VEGFC"
                     /codon_start=1
                     /product="vascular endothelial growth factor C"
                     /protein_id="XP_032474121.1"
                     /db_xref="GeneID:116746676"
                     /translation="MHLLGFSLACSLFAAALLPGPRRAPAAAAAAAAAFESGLGFSDA
                     EPDAGEAKAYAGRELEEQLRSASSVDELMTLLYPESWKMYKCQLRKGGWQHSREQANA
                     NTRTEGTLKLAAAHYNPEILKSIDTEWRKTQCVPREVCVDVGKEFGAATNTFFKPPCV
                     SVYRCGGCCNSEGQRCTNTSASYLSKALFEITVPLSQGPKPVTISFANHTSCRCMSKL
                     DVYRQVHSIIRRSLPATLPQCQAANKTCPTDYIWNNHICRCLAQQDLIFSSNVGDDSA
                     DGFHDICGPNKELDEETCQCVCRGGLWPSSCGPHKELDRNSCQCVCKNKLFPSSCAAN
                     REFDENTCQCVCKRTCPRNQPLNPGKCACECTETPQKCFLKGKKFQHQTCSCYRRPCT
                     NRVKHCEQGLSFSEEVCRCVPSYWKRPHMN"
     misc_feature    516..770
                     /gene="VEGFC"
                     /note="Platelet-derived and vascular endothelial growth
                     factors (PDGF, VEGF) family; Region: PDGF; smart00141"
                     /db_xref="CDD:197537"
     misc_feature    order(516..527,627..629,633..644,687..698)
                     /gene="VEGFC"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     misc_feature    order(522..524,615..617,627..629,648..650,756..758,
                     762..764)
                     /gene="VEGFC"
                     /note="cysteine knot motif; other site"
                     /db_xref="CDD:238079"
     misc_feature    order(597..599,624..626)
                     /gene="VEGFC"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238079"
ORIGIN      
        1 gcccggaccc gctcccgccg ccgcggctcc gcggggtccc cggacggccc tcgcggacag
       61 ggccgagccg cgaggcagcc tcgccggggc gcccggcccc gcgcgctcgc ggcccgtcca
      121 ccatgcactt gctgggcttc tctctggcgt gttccctgtt cgccgccgcg ctgctcccgg
      181 gtccgcgccg ggcgcccgcc gccgccgccg ccgccgccgc cgccttcgag tcgggactcg
      241 gcttctcgga cgcggagccg gacgcgggcg aagccaaggc ttatgcaggc agagagctgg
      301 aggagcagct gcggtcggcg tccagtgtag acgagctcat gactctgctc taccctgaat
      361 cctggaaaat gtacaagtgt cagttaagga aaggcggctg gcaacacagt agagagcagg
      421 ccaacgccaa tacgaggaca gaagggactc taaagttggc cgcagcacac tacaacccag
      481 agatcttaaa aagtatcgat actgagtgga ggaagaccca gtgcgtgccg cgggaagtgt
      541 gcgtggatgt ggggaaggag ttcggagcag cgacaaacac cttcttcaag cctccgtgcg
      601 tgtccgtcta cagatgcggc ggctgctgca acagcgaggg ccagcggtgc acgaacacca
      661 gcgccagcta cctcagcaag gcgttgtttg aaattacagt acctctctct caaggcccca
      721 aaccagtaac aatcagtttt gccaatcaca cttcctgccg atgcatgtct aagctggatg
      781 tttacagaca agtccattca attattagac gttccctgcc agcaacacta ccacaatgcc
      841 aggctgcaaa caagacctgc cccacagatt acatatggaa taatcacatc tgcagatgcc
      901 tggctcagca agatttaatt ttttcctcta atgttggaga cgactctgca gacggattcc
      961 atgacatctg tgggcccaac aaggagctgg atgaagagac ctgtcagtgc gtctgcagag
     1021 gggggctttg gccttccagc tgtggacccc acaaggaact ggacagaaac tcatgccagt
     1081 gtgtctgtaa aaacaaactc ttccccagct catgtgcggc caacagagaa tttgacgaaa
     1141 acacatgcca gtgcgtatgt aaaagaacct gcccaagaaa tcaaccccta aaccctggaa
     1201 aatgtgcctg tgaatgtaca gaaacaccac agaaatgctt cttgaaagga aagaagtttc
     1261 agcatcaaac atgcagttgt tacagacgac cgtgtacaaa tcgagtgaag cattgtgagc
     1321 agggactttc atttagtgaa gaagtatgtc gctgtgtccc ttcatattgg aaaagaccac
     1381 atatgaacta agattgtatc ttttctagtt cgtcattttt ctatcgtggg aaaacggtgt
     1441 tgccatgtta gaactatgag cgcagagact ttgtgggact gaaccatgtg gataatgtta
     1501 cagaaatgga ctggagcgca tctgcaaaag acctctttaa aagactggtt ttctgtcaat
     1561 gaccaaacag ctgaggtttt tctcttgtga ttttaaaaaa gaataatgac tatataattt
     1621 atttccacta aaaatattgt ttctgcatcc atttttatag caataacaat tggtaaagct
     1681 cactgtgatc aatattttta tatcatgcaa aatgtttaaa ataaaatgaa aattgtatta
     1741 taa
//
LOCUS       XM_032618231             240 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus defensin beta 109B (DEFB109B), mRNA.
ACCESSION   XM_032618231
VERSION     XM_032618231.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..240
                     /gene="DEFB109B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:116746677"
     CDS             1..240
                     /gene="DEFB109B"
                     /codon_start=1
                     /product="putative beta-defensin 109B"
                     /protein_id="XP_032474122.1"
                     /db_xref="GeneID:116746677"
                     /translation="MRLHLLLSVLLLSLTIIPKASTGLIPGQKQCILLRGVCKEGGCT
                     STDDTIGICNDQKKCCRRWWVLLPYPTPVPKSKSP"
ORIGIN      
        1 atgagactcc atttactgct ttctgttctc ctcctctctt tgactataat accaaaagca
       61 agtactggcc ttattccagg acaaaaacaa tgtattcttc tgcgaggggt gtgcaaagaa
      121 ggaggatgca ccagcacgga tgataccatt ggtatatgta atgatcaaaa aaaatgttgt
      181 agaaggtggt gggtacttct tccctatcca acgccagttc ccaaatcaaa atctccttga
//
LOCUS       XM_032618232            3235 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat and SOCS box containing 5
            (ASB5), transcript variant X1, mRNA.
ACCESSION   XM_032618232
VERSION     XM_032618232.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3235
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3235
                     /gene="ASB5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746678"
     CDS             3..1622
                     /gene="ASB5"
                     /codon_start=1
                     /product="ankyrin repeat and SOCS box protein 5 isoform
                     X1"
                     /protein_id="XP_032474123.1"
                     /db_xref="GeneID:116746678"
                     /translation="MILETCSRTGTLRSLKAVVMKQPKVSAAITLSEKANSEFARDST
                     VFIAADAPKPAPHAHPGPRSGRGPPLCEPRRLRRAFRGGGSGGALPRPRLLSGPRTRA
                     SARAPAAWTHPPAGGTRRTGEPEPRGGPPLLARPGAATNQRPAREGRGFAAEGPPPGR
                     WLPLVRPAARPPSFPRPYGRTSCPGASRTGARHIRDLDLTKGGSSRAGAAMSVVEESR
                     PFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVTQGQG
                     SWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLQ
                     AGANVNAITIDGVTPLFNACSQGSPSCTELLLEYGAKPQQESCLPSPTHEAASKGHHE
                     CLEVLISWGIDVDQDIPHLGTPLYVASMSQQFHCIRKLLYAGADVQKGKYWDTPLHAA
                     AQQSCTEIVNLLLEFGADVNARNTELLRPVDVATSSSLVERLLLQHEATPSSLCQLCR
                     LCIRNYIGRPRLHLIPQLQLPTLLQNFLQYR"
     misc_feature    <39..>563
                     /gene="ASB5"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    735..1484
                     /gene="ASB5"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(843..845,855..860,867..875,879..884,894..896,
                     903..905,930..932,936..938,942..944,954..959,966..974,
                     978..983,993..995,1002..1004,1029..1031,1035..1037,
                     1041..1043,1053..1058,1065..1073,1077..1082,1092..1094,
                     1101..1103)
                     /gene="ASB5"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    843..932
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    936..1031
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1035..1121
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1140..1226
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1149..1154,1161..1169,1173..1178,1188..1190,
                     1197..1199,1224..1226,1230..1232,1236..1238,1248..1253,
                     1260..1268,1272..1277,1287..1289,1296..1298,1320..1322,
                     1326..1328,1332..1334,1344..1349,1356..1364,1368..1373,
                     1383..1385,1392..1394,1419..1421)
                     /gene="ASB5"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1230..1322
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1326..1421
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1494..1619
                     /gene="ASB5"
                     /note="SOCS (suppressors of cytokine signaling) box of
                     ASB5-like proteins. ASB family members have a C-terminal
                     SOCS box and an N-terminal ankyrin-related sequence. ASB5
                     has been implicated in the initiation of arteriogenesis.
                     The general function of the SOCS...; Region: SOCS_ASB5;
                     cd03724"
                     /db_xref="CDD:239694"
     misc_feature    order(1497..1514,1530..1532,1560..1562,1578..1580,
                     1593..1595)
                     /gene="ASB5"
                     /note="putative elongin B/C interaction [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239694"
ORIGIN      
        1 gcatgatcct cgagacgtgc agccgcaccg ggacgctccg gtctttgaag gcggtggtga
       61 tgaaacagcc gaaggtgagc gccgccatca cgctcagcga gaaggcgaac agcgagttcg
      121 cccgcgacag caccgtgttc atcgcggccg acgccccgaa acccgctccc cacgcacacc
      181 cgggaccccg ttccggccgc ggtccacctc tctgcgagcc gcgccgcctg cgccgagcgt
      241 tccggggtgg ggggagtggg ggcgcgctgc cgcggccccg cctcctttcc ggtccccgga
      301 cgcgagcgag cgcgcgcgct cccgcagcct ggacacaccc accagcgggc gggacgcgcc
      361 gaaccggaga gccggagccg cgcgggggcc cgcccctcct cgcgcggcct ggcgccgcca
      421 ccaatcagcg accagccagg gaggggcggg gcttcgccgc ggaaggcccg cctcctgggc
      481 gctggcttcc cctcgttcgg cccgcggctc gcccaccatc ctttccccgc ccttacggca
      541 ggaccagctg tccaggagca tcccggaccg gagccaggca cattcgggac ttggatctga
      601 ccaagggcgg cagcagccgg gctggtgcag cgatgtcggt ggtcgaagaa agccggccct
      661 ttgctcagca gctctctaac gtctacttca ccatcctctc actgttctgt ttcaagctct
      721 ttgtgaaaat cagcctcgcc atcctcagtc acttctacat agtgaaaggc aaccgcaagg
      781 aggcggcccg gatagcggct gaattttacg gagtaaccca aggacaaggt tcctgggcag
      841 atcggtcacc acttcatgaa gcggcaagtc aaggtcgtct tctcgctctg agaacattat
      901 tatcgcaggg ctataatgtc aatgcagtaa ccatagacca cgtcaccccg ttacacgagg
      961 cctgccttgg agatcacgtg gcctgtgcca ggacacttct gcaagctgga gctaacgtaa
     1021 atgcgatcac catagacggt gtgaccccgt tattcaatgc gtgctcacaa ggcagcccca
     1081 gctgcacaga actgcttctg gaatatggtg ccaaacccca gcaggagtcc tgtcttcctt
     1141 cccctacaca cgaggccgcc agcaaaggtc accatgaatg tctggaagtc ctcatatcct
     1201 ggggcataga tgttgatcaa gacattcctc atctgggaac ccctctgtat gtagcttcta
     1261 tgtctcagca gttccactgc atccggaagc ttctttacgc tggcgctgac gtacaaaaag
     1321 gcaaatattg ggatacccca ttacacgctg ctgctcaaca gtcctgtaca gaaattgtaa
     1381 acttactgct agaatttgga gcggacgtca atgccagaaa cacagagctt ctgagacctg
     1441 tcgacgtagc gacctctagc agtttggtgg aaagattact gcttcagcat gaagctaccc
     1501 caagctctct gtgccaactt tgcagactct gtatcagaaa ctacattgga agaccaagat
     1561 tacaccttat cccacagctc cagctgccaa cattattgca gaatttctta cagtatcgat
     1621 aaggcagtaa aataattcta aatgtttgaa aatcaaaaat ttctatttca tctgcatagt
     1681 gtatatttca tattaaaata tgctaaagat aggggaaaga gatatgagaa caccccggag
     1741 aagaagtgaa atagcaattt tagttaaaga gtactagtac atactattgt tttttgcatt
     1801 tttactgttt ttgaactata gtatgtttaa agtatctata tattactagc tattcccata
     1861 tatccctttg ttgatttaga aaaaaatgag aaattcacca tttcattttt agaatgaaac
     1921 agaaaaatgt gaacccttac taaaagtatt tgtatattat atttttaaag gtctatattt
     1981 ttcaaataat gtgttagctt ttaaatcttg gcctctgtaa ttgactatct ctgtattttt
     2041 tacattaata tgaaatatga gtatggtttc gaaaagagca agttatatcc tttttgaaat
     2101 aaagttgact ctcattcagg aaacccaccc tgttagatgt acacttgtca ttataatgat
     2161 taattctgta aagaaaggat aaattgcccc ttccctgcaa agatcccact ggtcacttca
     2221 ccgctttaaa tggacctatt tcagaaactg gtaggactaa aatggtcact actgccctct
     2281 caccctgaga actttggaac attacacacc tgctcaaacc atctgaagac cctctccttc
     2341 tcaagggtgg cctctcaagg tttcccttct gtgcttttac acgtatcact ccagccttcc
     2401 cccagttcag agactgctga tagctggtga tacctggacc cagcaaaatg aacttcatat
     2461 ctagttgata aagaggacct gggtcacact tcagggatca gggcagtcca aggctataga
     2521 aaatggaaga cgaaaaatgc cttaacttgt ggggttttca aagaaaggga caagggggta
     2581 tcacttagca aatgtagaaa actcagaaaa tgtacgctat ctgtggacct tcattgtggt
     2641 gtttctaacc cttcttacac aaagcaaggg ttctgcacag actgtactgc aagggaatgc
     2701 tgtacaccag aaggtattag tgtagcggtg tcccctgcag gggtttattc tcttctgctt
     2761 aactgtactt gagtgcgatg taaaacataa tttaaaaaat taaataaaaa atttttaaaa
     2821 tcctttgtgc cttctttgta atttagacta tatttgagtt tattatggat ttagaaataa
     2881 gataatcaag atacttgtaa tactgtgtaa agtagaagaa aatattttga tgagttttat
     2941 ataataaatt tatcaaattt tgataaaata ttttgaccac tattttgatg acccaggggc
     3001 ctagtaactt agttcttggc tgactttcag aggcccatgg gaaataaact attattgtat
     3061 gtaaccccaa agttactaag atttgccttt taaaaaaaat catcttagat attcgaaagt
     3121 agaaataagg ctgtagcatg tttgtttaaa aaatgtcttc tatgtgggta gagactttta
     3181 acttagtctg ttttacaaaa tatctcagtt taataaattt gtaataccct cagaa
//
LOCUS       XM_032618233            2722 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat and SOCS box containing 5
            (ASB5), transcript variant X2, mRNA.
ACCESSION   XM_032618233
VERSION     XM_032618233.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2722
                     /gene="ASB5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746678"
     CDS             120..1109
                     /gene="ASB5"
                     /codon_start=1
                     /product="ankyrin repeat and SOCS box protein 5 isoform
                     X2"
                     /protein_id="XP_032474124.1"
                     /db_xref="GeneID:116746678"
                     /translation="MSVVEESRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIV
                     KGNRKEAARIAAEFYGVTQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTID
                     HVTPLHEACLGDHVACARTLLQAGANVNAITIDGVTPLFNACSQGSPSCTELLLEYGA
                     KPQQESCLPSPTHEAASKGHHECLEVLISWGIDVDQDIPHLGTPLYVASMSQQFHCIR
                     KLLYAGADVQKGKYWDTPLHAAAQQSCTEIVNLLLEFGADVNARNTELLRPVDVATSS
                     SLVERLLLQHEATPSSLCQLCRLCIRNYIGRPRLHLIPQLQLPTLLQNFLQYR"
     misc_feature    222..971
                     /gene="ASB5"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    order(330..332,342..347,354..362,366..371,381..383,
                     390..392,417..419,423..425,429..431,441..446,453..461,
                     465..470,480..482,489..491,516..518,522..524,528..530,
                     540..545,552..560,564..569,579..581,588..590)
                     /gene="ASB5"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    330..419
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    423..518
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    522..608
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    627..713
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(636..641,648..656,660..665,675..677,684..686,
                     711..713,717..719,723..725,735..740,747..755,759..764,
                     774..776,783..785,807..809,813..815,819..821,831..836,
                     843..851,855..860,870..872,879..881,906..908)
                     /gene="ASB5"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    717..809
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    813..908
                     /gene="ASB5"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    981..1106
                     /gene="ASB5"
                     /note="SOCS (suppressors of cytokine signaling) box of
                     ASB5-like proteins. ASB family members have a C-terminal
                     SOCS box and an N-terminal ankyrin-related sequence. ASB5
                     has been implicated in the initiation of arteriogenesis.
                     The general function of the SOCS...; Region: SOCS_ASB5;
                     cd03724"
                     /db_xref="CDD:239694"
     misc_feature    order(984..1001,1017..1019,1047..1049,1065..1067,
                     1080..1082)
                     /gene="ASB5"
                     /note="putative elongin B/C interaction [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239694"
ORIGIN      
        1 acgaacattt aagagcaagc ccgggaagga ccagctgtcc aggagcatcc cggaccggag
       61 ccaggcacat tcgggacttg gatctgacca agggcggcag cagccgggct ggtgcagcga
      121 tgtcggtggt cgaagaaagc cggccctttg ctcagcagct ctctaacgtc tacttcacca
      181 tcctctcact gttctgtttc aagctctttg tgaaaatcag cctcgccatc ctcagtcact
      241 tctacatagt gaaaggcaac cgcaaggagg cggcccggat agcggctgaa ttttacggag
      301 taacccaagg acaaggttcc tgggcagatc ggtcaccact tcatgaagcg gcaagtcaag
      361 gtcgtcttct cgctctgaga acattattat cgcagggcta taatgtcaat gcagtaacca
      421 tagaccacgt caccccgtta cacgaggcct gccttggaga tcacgtggcc tgtgccagga
      481 cacttctgca agctggagct aacgtaaatg cgatcaccat agacggtgtg accccgttat
      541 tcaatgcgtg ctcacaaggc agccccagct gcacagaact gcttctggaa tatggtgcca
      601 aaccccagca ggagtcctgt cttccttccc ctacacacga ggccgccagc aaaggtcacc
      661 atgaatgtct ggaagtcctc atatcctggg gcatagatgt tgatcaagac attcctcatc
      721 tgggaacccc tctgtatgta gcttctatgt ctcagcagtt ccactgcatc cggaagcttc
      781 tttacgctgg cgctgacgta caaaaaggca aatattggga taccccatta cacgctgctg
      841 ctcaacagtc ctgtacagaa attgtaaact tactgctaga atttggagcg gacgtcaatg
      901 ccagaaacac agagcttctg agacctgtcg acgtagcgac ctctagcagt ttggtggaaa
      961 gattactgct tcagcatgaa gctaccccaa gctctctgtg ccaactttgc agactctgta
     1021 tcagaaacta cattggaaga ccaagattac accttatccc acagctccag ctgccaacat
     1081 tattgcagaa tttcttacag tatcgataag gcagtaaaat aattctaaat gtttgaaaat
     1141 caaaaatttc tatttcatct gcatagtgta tatttcatat taaaatatgc taaagatagg
     1201 ggaaagagat atgagaacac cccggagaag aagtgaaata gcaattttag ttaaagagta
     1261 ctagtacata ctattgtttt ttgcattttt actgtttttg aactatagta tgtttaaagt
     1321 atctatatat tactagctat tcccatatat ccctttgttg atttagaaaa aaatgagaaa
     1381 ttcaccattt catttttaga atgaaacaga aaaatgtgaa cccttactaa aagtatttgt
     1441 atattatatt tttaaaggtc tatatttttc aaataatgtg ttagctttta aatcttggcc
     1501 tctgtaattg actatctctg tattttttac attaatatga aatatgagta tggtttcgaa
     1561 aagagcaagt tatatccttt ttgaaataaa gttgactctc attcaggaaa cccaccctgt
     1621 tagatgtaca cttgtcatta taatgattaa ttctgtaaag aaaggataaa ttgccccttc
     1681 cctgcaaaga tcccactggt cacttcaccg ctttaaatgg acctatttca gaaactggta
     1741 ggactaaaat ggtcactact gccctctcac cctgagaact ttggaacatt acacacctgc
     1801 tcaaaccatc tgaagaccct ctccttctca agggtggcct ctcaaggttt cccttctgtg
     1861 cttttacacg tatcactcca gccttccccc agttcagaga ctgctgatag ctggtgatac
     1921 ctggacccag caaaatgaac ttcatatcta gttgataaag aggacctggg tcacacttca
     1981 gggatcaggg cagtccaagg ctatagaaaa tggaagacga aaaatgcctt aacttgtggg
     2041 gttttcaaag aaagggacaa gggggtatca cttagcaaat gtagaaaact cagaaaatgt
     2101 acgctatctg tggaccttca ttgtggtgtt tctaaccctt cttacacaaa gcaagggttc
     2161 tgcacagact gtactgcaag ggaatgctgt acaccagaag gtattagtgt agcggtgtcc
     2221 cctgcagggg tttattctct tctgcttaac tgtacttgag tgcgatgtaa aacataattt
     2281 aaaaaattaa ataaaaaatt tttaaaatcc tttgtgcctt ctttgtaatt tagactatat
     2341 ttgagtttat tatggattta gaaataagat aatcaagata cttgtaatac tgtgtaaagt
     2401 agaagaaaat attttgatga gttttatata ataaatttat caaattttga taaaatattt
     2461 tgaccactat tttgatgacc caggggccta gtaacttagt tcttggctga ctttcagagg
     2521 cccatgggaa ataaactatt attgtatgta accccaaagt tactaagatt tgccttttaa
     2581 aaaaaatcat cttagatatt cgaaagtaga aataaggctg tagcatgttt gtttaaaaaa
     2641 tgtcttctat gtgggtagag acttttaact tagtctgttt tacaaaatat ctcagtttaa
     2701 taaatttgta ataccctcag aa
//
LOCUS       XM_032618234            7629 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X1, mRNA.
ACCESSION   XM_032618234
VERSION     XM_032618234.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7629
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7629
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..7007
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X1"
                     /protein_id="XP_032474125.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLA
                     DCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKI
                     SRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGN
                     TNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQ
                     LSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEML
                     REELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATW
                     GGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVK
                     ETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQ
                     LKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYT
                     QLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVN
                     LFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFP
                     KPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNS
                     NRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPK
                     SKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQ
                     LEKVLRYSRSTEMSSAHARRILQQSNRNACNEAPETGSDFSMFEALRDTIYSEVATLI
                     SQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSG
                     TWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATD
                     DLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVET
                     PIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTS
                     VRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLF
                     NELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDE
                     DKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALT
                     NYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNV
                     PSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLT
                     EIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVE
                     DLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRF
                     PSLWV"
     misc_feature    5010..6908
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagcag
     2641 attgtcgata caatagagaa caagaacagg ggattcacgt tgcacaaggt gaaggtgagg
     2701 aggaggaaga ggaagaagca gaagatgagg cagtcagtgg agcgtcatta tctagtcatc
     2761 ggagcagtct ggttgatgag acgcctgaag atgctgaatt tgaacagaag atcagcagac
     2821 ttatggctgc aaaacagaaa cttagacagt tacaagatct tgttgcattg gtgcaggatg
     2881 atgatacagc agatcaagga gttatctctg ccaatacctc aaatttggat gatttctacc
     2941 cagcagaaga agacaccaaa caaaatgcaa ataacactag aggaaatacc aataaaacac
     3001 agaaagatgc tggagtaaat gaaaaggcaa gagagaaatt ttatgaggct aaactacagc
     3061 agcaacagag agagctcaaa caattgcagg aagaaagaaa gaaactgatt gagattcaag
     3121 agaaaattca agcattgcaa aaggcatgtc ctgacctaca gctgtcagcc actagtgcag
     3181 gtaattgtcc cacaaaaaaa tatatgccag ctgttacttc aaccccaact gttaatgaaa
     3241 atgaagccag tacaagcaga tctgcttttg aacctgatga tccttcagtg gtagataatg
     3301 agttgtggtc agaaatgcga agacacgaaa tgttaaggga agagctgcga cagagaagaa
     3361 agcagcttga agctttgatg gctgaacatc agaggaggca aggtctggct gaaactacat
     3421 ctccagtggc tgtttcactg agaagtgatg ggtctgagaa cctgtgtacg cctcaacaga
     3481 gtagaacaga aaaaacaatg gcaacttggg gaggttctat ccagtgtgca ctagatggag
     3541 aaggagatga agatggttac ctttctgaag cagttgttcg gacagatgaa gacgaggagg
     3601 aggaggagca agacgccggc tcccatgata gcttttccgt gtgtcctcct agcagcgcaa
     3661 atcataactc ctataatgta aaggaaacta aaaataggtg gaagaacaat cgcccttttt
     3721 cagcagatgg aaattatcgt cctttagcca ggacaagaca acagaatatc agcatgcagc
     3781 gtcaggaaaa ccttcgctgg gtgtcagaac tctcttatgt agaagagaaa gaacagtggc
     3841 aagaacaaat caatcagcta aagaaacaac ttgatttcag tgtcagtatt tgtcagactt
     3901 tgatgcaaga ccagcagact ctgtcttgtc tgctacaaac tcttctcacg ggcccttaca
     3961 gtgttatgcc cagcaatgtt gcatctcctc aagtacacct tataatgcac cagttgaacc
     4021 agtgctacac ccagctaaca tggcaacaga ataatgtaca aaggttgaag caaacgctaa
     4081 atgaacttat gcgccaacaa aatcatccag aaaaacctgg aagcaaggaa agagtcagta
     4141 gtgcatcaca ccctccttct cccagtttat tttgtccttt cagctttcca gcacagcctg
     4201 taaatctgtt caacctaccg gggtttacta atttttcatc atttgcacca ggtatgaatt
     4261 tcagcccttt atttccttct aattttggag atttttctca aaatatttct acacccactg
     4321 aacagcagca accattagcc cagaatcttt cagggaaaac agaatacatg gcttttccaa
     4381 aaccttttga aagtagttct tctgttggag cagaaaaaca aaggaatcaa aaacagcccg
     4441 aagaggaggt ggagaacagt aggacaccat ggttatatga ccaagaaggt gaagtagaaa
     4501 aaccatttct caagactgga tgtgcagtgt ctgtaaagaa aacaacaaat agtaatcgca
     4561 aaaatcaatt agataccagt aggagaagac gccaatttga tgaagagtcg ttagaaagct
     4621 ttagcagtat gcctgaccca gtagatccaa caacagtaac taaaacattc aagtcaagaa
     4681 aagcatctgc acaggccagc ctggcatcta aagataaaac tcccaaatca aagagtaaga
     4741 agaggcattc tactcagctg aaaagcagag ttaaaaatat tgggtatgaa agtgccagta
     4801 tgtctagcac atgtgaacct tgcaaaagta ggaacagaca ttcagcccag actgaagagc
     4861 ctgttcaagc aaaagtattc agcagaaaga atcatgagca gctggaaaaa gtactaagat
     4921 atagtaggtc tacagaaatg tcttcagcac atgctaggag aatactacag caatctaaca
     4981 gaaatgcatg caatgaagcg ccagaaaccg ggagtgattt ttccatgttt gaagctttgc
     5041 gggataccat ttattctgaa gtagctacgt tgatttctca aaatgaatct cgtccacatt
     5101 ttcttattga actcttccat gaacttcagc tactgaatac agactatttg agacagaggg
     5161 ctttatatgc cttgcaggac atagtatcca gacatatttc tgagaaccat gaaaaagaag
     5221 gggaaaacgt aaagtcagtg aattctggta cttggatagc atcaaactca gaacttactc
     5281 ccagtgaaag ccttgctact actgatgatg aaacttttga gaagaacttt gagagagaaa
     5341 cacataaaat aagtgagcaa aatgatgctg ataatgctag tgtcacgtct gtatcttcaa
     5401 attttgagcc ttttgcaaca gatgatctgg gtaacactgt gattcactta gatcaagcat
     5461 tagccagaat gagagaatat gagcgtatga agactgagac tgaaagtaac acaaatgtca
     5521 gatgcacctg caggattata gaggatgagg atggtgctgc tgccccgact acggttgata
     5581 gtttagaagt ggaaactcct attattgaaa atcatagttc acagcaatct gtaagtgaag
     5641 tttctaccgt cccatgtcct agaattgata cacagcaact ggaccggcaa attaaagcaa
     5701 ttatgaaaga agtcattccc tttttgaagg agcacatgga tgaagtatgc tcttctcaac
     5761 ttctaacctc agtaagacgc atggttttga ctcttaccca gcaaaacgat gagagcaaag
     5821 agtttgtaaa gttctttcat aaacaacttg gaagtatatt acaggattca ctggcaaaat
     5881 ttgctggcag aaaactgaaa gattgtggag aagatcttct tgtagagata tctgaagtgt
     5941 tatttaatga attggctttc tttaaactca tgcaagattt ggataataat agtataactg
     6001 ttaaacagag atgcaaaagg aaaattgaag cagctggagt gatacagtct tacgcaaaag
     6061 aggccaaaag gattcttgaa ggagatcatg gctcacctgc tggagaaatt gatgatgaag
     6121 acaaagataa ggatgagact gaaacagtta aacagagtca aacatctgag gtttatgatg
     6181 gtgacggtcc caaaaatgtg agctctgatg tctctgatca agaggaagat gaagaaagtg
     6241 aagaatgtcc agtgtctatt aatttgtcca aagctgaaac tcaggctttg actaattatg
     6301 gaagtggaga agatgagaat gaagatgaag aaatagaaga atttgaagag ggacctgtag
     6361 atgtccagac ttcactgcag gctaacactg aaactacaga agaaaatgaa catgacgatc
     6421 aggttccaca gcatgatttt gaaaaatcag cggaaagcaa aaatgtccca tcagaacaag
     6481 aacccactac tagtaaagat gaccaagata gcactcctgt gaagccctgt tacctcaata
     6541 tcttggaaaa tgagcaacct ttaaacagca ctgtccaaaa ggacgctctt actaccatcg
     6601 attcatctaa tcagcctaac gctttgcctt tacctttaac tgaaattgaa accttggtgc
     6661 ctagagtcaa agaagttaaa tccgcccagg aaactcctga aagctctttg gctggaagtc
     6721 ctgatactga atctccagtg ttagtgaatg actatgaagc agaatctggt aacataagtc
     6781 aaaaatctga tgaagaagac tttgtgaaag ttgaagattt accacttaaa ctgacaatat
     6841 attcagaggc agatctaagg aagaaaatgg tagaagaaga acagaaaaac catttatctg
     6901 gtgaaatatt acgtgaaatg cagactgaag aactagctgg gaattctcag acactaaaag
     6961 aacctgagcc aagttatagt cccagatttc cttctttatg ggtctaatag cacaacccaa
     7021 gggccactcg gaggagcaca tttcttgcat caaggtcaaa gattttcttt ttgttcatca
     7081 attcatcagc tgattaaact catataagat tttttgtttt ttttaagaaa tagggtgaag
     7141 agaagtgcaa accaaatgtc aaaccttcag ttaattcctc actcttcagc ccatttctgc
     7201 ctgttaggac tcagttggta ccctctgcac tgccgcctgt cctagtgtgt ctaggctgca
     7261 gcttcctccc ctcttctctg tgcctccatc tcctttgagc atcctgggaa cttgttgtgg
     7321 ttcgccatcc tctgttctct cacagccact cttcttctgt tctgggttta ttcattttta
     7381 tacttctttt cttttttttt tctagtgggg ctttcttttg gagagagagg aagtatctgc
     7441 ttagtctgcc gtcttaaaat ggaaaccctt acctgtgcct tttaaactct tgctgtgtgt
     7501 taccagggaa ttattgtagc aaactaagtt tcttttgtaa taactttata ttagaaatga
     7561 aagttttaat ggaagagagc agtattaaac taaattctat aaggtcttaa cttagtaagt
     7621 aatttataa
//
LOCUS       XM_032618235            7626 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X2, mRNA.
ACCESSION   XM_032618235
VERSION     XM_032618235.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7626
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7626
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..7004
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X2"
                     /protein_id="XP_032474126.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLD
                     CRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKIS
                     RLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNT
                     NKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQL
                     SATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLR
                     EELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWG
                     GSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKE
                     TKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQL
                     KKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQ
                     LTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNL
                     FNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPK
                     PFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSN
                     RKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKS
                     KSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQL
                     EKVLRYSRSTEMSSAHARRILQQSNRNACNEAPETGSDFSMFEALRDTIYSEVATLIS
                     QNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGT
                     WIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDD
                     LGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETP
                     IIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSV
                     RRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFN
                     ELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDED
                     KDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTN
                     YGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVP
                     SEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTE
                     IETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVED
                     LPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFP
                     SLWV"
     misc_feature    5007..6905
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagatt
     2641 gtcgatacaa tagagaacaa gaacagggga ttcacgttgc acaaggtgaa ggtgaggagg
     2701 aggaagagga agaagcagaa gatgaggcag tcagtggagc gtcattatct agtcatcgga
     2761 gcagtctggt tgatgagacg cctgaagatg ctgaatttga acagaagatc agcagactta
     2821 tggctgcaaa acagaaactt agacagttac aagatcttgt tgcattggtg caggatgatg
     2881 atacagcaga tcaaggagtt atctctgcca atacctcaaa tttggatgat ttctacccag
     2941 cagaagaaga caccaaacaa aatgcaaata acactagagg aaataccaat aaaacacaga
     3001 aagatgctgg agtaaatgaa aaggcaagag agaaatttta tgaggctaaa ctacagcagc
     3061 aacagagaga gctcaaacaa ttgcaggaag aaagaaagaa actgattgag attcaagaga
     3121 aaattcaagc attgcaaaag gcatgtcctg acctacagct gtcagccact agtgcaggta
     3181 attgtcccac aaaaaaatat atgccagctg ttacttcaac cccaactgtt aatgaaaatg
     3241 aagccagtac aagcagatct gcttttgaac ctgatgatcc ttcagtggta gataatgagt
     3301 tgtggtcaga aatgcgaaga cacgaaatgt taagggaaga gctgcgacag agaagaaagc
     3361 agcttgaagc tttgatggct gaacatcaga ggaggcaagg tctggctgaa actacatctc
     3421 cagtggctgt ttcactgaga agtgatgggt ctgagaacct gtgtacgcct caacagagta
     3481 gaacagaaaa aacaatggca acttggggag gttctatcca gtgtgcacta gatggagaag
     3541 gagatgaaga tggttacctt tctgaagcag ttgttcggac agatgaagac gaggaggagg
     3601 aggagcaaga cgccggctcc catgatagct tttccgtgtg tcctcctagc agcgcaaatc
     3661 ataactccta taatgtaaag gaaactaaaa ataggtggaa gaacaatcgc cctttttcag
     3721 cagatggaaa ttatcgtcct ttagccagga caagacaaca gaatatcagc atgcagcgtc
     3781 aggaaaacct tcgctgggtg tcagaactct cttatgtaga agagaaagaa cagtggcaag
     3841 aacaaatcaa tcagctaaag aaacaacttg atttcagtgt cagtatttgt cagactttga
     3901 tgcaagacca gcagactctg tcttgtctgc tacaaactct tctcacgggc ccttacagtg
     3961 ttatgcccag caatgttgca tctcctcaag tacaccttat aatgcaccag ttgaaccagt
     4021 gctacaccca gctaacatgg caacagaata atgtacaaag gttgaagcaa acgctaaatg
     4081 aacttatgcg ccaacaaaat catccagaaa aacctggaag caaggaaaga gtcagtagtg
     4141 catcacaccc tccttctccc agtttatttt gtcctttcag ctttccagca cagcctgtaa
     4201 atctgttcaa cctaccgggg tttactaatt tttcatcatt tgcaccaggt atgaatttca
     4261 gccctttatt tccttctaat tttggagatt tttctcaaaa tatttctaca cccactgaac
     4321 agcagcaacc attagcccag aatctttcag ggaaaacaga atacatggct tttccaaaac
     4381 cttttgaaag tagttcttct gttggagcag aaaaacaaag gaatcaaaaa cagcccgaag
     4441 aggaggtgga gaacagtagg acaccatggt tatatgacca agaaggtgaa gtagaaaaac
     4501 catttctcaa gactggatgt gcagtgtctg taaagaaaac aacaaatagt aatcgcaaaa
     4561 atcaattaga taccagtagg agaagacgcc aatttgatga agagtcgtta gaaagcttta
     4621 gcagtatgcc tgacccagta gatccaacaa cagtaactaa aacattcaag tcaagaaaag
     4681 catctgcaca ggccagcctg gcatctaaag ataaaactcc caaatcaaag agtaagaaga
     4741 ggcattctac tcagctgaaa agcagagtta aaaatattgg gtatgaaagt gccagtatgt
     4801 ctagcacatg tgaaccttgc aaaagtagga acagacattc agcccagact gaagagcctg
     4861 ttcaagcaaa agtattcagc agaaagaatc atgagcagct ggaaaaagta ctaagatata
     4921 gtaggtctac agaaatgtct tcagcacatg ctaggagaat actacagcaa tctaacagaa
     4981 atgcatgcaa tgaagcgcca gaaaccggga gtgatttttc catgtttgaa gctttgcggg
     5041 ataccattta ttctgaagta gctacgttga tttctcaaaa tgaatctcgt ccacattttc
     5101 ttattgaact cttccatgaa cttcagctac tgaatacaga ctatttgaga cagagggctt
     5161 tatatgcctt gcaggacata gtatccagac atatttctga gaaccatgaa aaagaagggg
     5221 aaaacgtaaa gtcagtgaat tctggtactt ggatagcatc aaactcagaa cttactccca
     5281 gtgaaagcct tgctactact gatgatgaaa cttttgagaa gaactttgag agagaaacac
     5341 ataaaataag tgagcaaaat gatgctgata atgctagtgt cacgtctgta tcttcaaatt
     5401 ttgagccttt tgcaacagat gatctgggta acactgtgat tcacttagat caagcattag
     5461 ccagaatgag agaatatgag cgtatgaaga ctgagactga aagtaacaca aatgtcagat
     5521 gcacctgcag gattatagag gatgaggatg gtgctgctgc cccgactacg gttgatagtt
     5581 tagaagtgga aactcctatt attgaaaatc atagttcaca gcaatctgta agtgaagttt
     5641 ctaccgtccc atgtcctaga attgatacac agcaactgga ccggcaaatt aaagcaatta
     5701 tgaaagaagt cattcccttt ttgaaggagc acatggatga agtatgctct tctcaacttc
     5761 taacctcagt aagacgcatg gttttgactc ttacccagca aaacgatgag agcaaagagt
     5821 ttgtaaagtt ctttcataaa caacttggaa gtatattaca ggattcactg gcaaaatttg
     5881 ctggcagaaa actgaaagat tgtggagaag atcttcttgt agagatatct gaagtgttat
     5941 ttaatgaatt ggctttcttt aaactcatgc aagatttgga taataatagt ataactgtta
     6001 aacagagatg caaaaggaaa attgaagcag ctggagtgat acagtcttac gcaaaagagg
     6061 ccaaaaggat tcttgaagga gatcatggct cacctgctgg agaaattgat gatgaagaca
     6121 aagataagga tgagactgaa acagttaaac agagtcaaac atctgaggtt tatgatggtg
     6181 acggtcccaa aaatgtgagc tctgatgtct ctgatcaaga ggaagatgaa gaaagtgaag
     6241 aatgtccagt gtctattaat ttgtccaaag ctgaaactca ggctttgact aattatggaa
     6301 gtggagaaga tgagaatgaa gatgaagaaa tagaagaatt tgaagaggga cctgtagatg
     6361 tccagacttc actgcaggct aacactgaaa ctacagaaga aaatgaacat gacgatcagg
     6421 ttccacagca tgattttgaa aaatcagcgg aaagcaaaaa tgtcccatca gaacaagaac
     6481 ccactactag taaagatgac caagatagca ctcctgtgaa gccctgttac ctcaatatct
     6541 tggaaaatga gcaaccttta aacagcactg tccaaaagga cgctcttact accatcgatt
     6601 catctaatca gcctaacgct ttgcctttac ctttaactga aattgaaacc ttggtgccta
     6661 gagtcaaaga agttaaatcc gcccaggaaa ctcctgaaag ctctttggct ggaagtcctg
     6721 atactgaatc tccagtgtta gtgaatgact atgaagcaga atctggtaac ataagtcaaa
     6781 aatctgatga agaagacttt gtgaaagttg aagatttacc acttaaactg acaatatatt
     6841 cagaggcaga tctaaggaag aaaatggtag aagaagaaca gaaaaaccat ttatctggtg
     6901 aaatattacg tgaaatgcag actgaagaac tagctgggaa ttctcagaca ctaaaagaac
     6961 ctgagccaag ttatagtccc agatttcctt ctttatgggt ctaatagcac aacccaaggg
     7021 ccactcggag gagcacattt cttgcatcaa ggtcaaagat tttctttttg ttcatcaatt
     7081 catcagctga ttaaactcat ataagatttt ttgttttttt taagaaatag ggtgaagaga
     7141 agtgcaaacc aaatgtcaaa ccttcagtta attcctcact cttcagccca tttctgcctg
     7201 ttaggactca gttggtaccc tctgcactgc cgcctgtcct agtgtgtcta ggctgcagct
     7261 tcctcccctc ttctctgtgc ctccatctcc tttgagcatc ctgggaactt gttgtggttc
     7321 gccatcctct gttctctcac agccactctt cttctgttct gggtttattc atttttatac
     7381 ttcttttctt ttttttttct agtggggctt tcttttggag agagaggaag tatctgctta
     7441 gtctgccgtc ttaaaatgga aacccttacc tgtgcctttt aaactcttgc tgtgtgttac
     7501 cagggaatta ttgtagcaaa ctaagtttct tttgtaataa ctttatatta gaaatgaaag
     7561 ttttaatgga agagagcagt attaaactaa attctataag gtcttaactt agtaagtaat
     7621 ttataa
//
LOCUS       XM_032618236            8966 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X3, mRNA.
ACCESSION   XM_032618236
VERSION     XM_032618236.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8966
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8966
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 23 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6992
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X3"
                     /protein_id="XP_032474127.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLA
                     DCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKI
                     SRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGN
                     TNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQ
                     LSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEML
                     REELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATW
                     GGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVK
                     ETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQ
                     LKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYT
                     QLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVN
                     LFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFP
                     KPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNS
                     NRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPK
                     SKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQ
                     LEKVLRYSRSTEMSSAHARRILQQSNRNACNEAPETGSDFSMFEALRDTIYSEVATLI
                     SQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSG
                     TWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATD
                     DLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVET
                     PIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTS
                     VRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLF
                     NELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDE
                     DKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALT
                     NYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNV
                     PSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLT
                     EIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVE
                     DLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPETVGAQST
                     "
     misc_feature    5010..6908
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagcag
     2641 attgtcgata caatagagaa caagaacagg ggattcacgt tgcacaaggt gaaggtgagg
     2701 aggaggaaga ggaagaagca gaagatgagg cagtcagtgg agcgtcatta tctagtcatc
     2761 ggagcagtct ggttgatgag acgcctgaag atgctgaatt tgaacagaag atcagcagac
     2821 ttatggctgc aaaacagaaa cttagacagt tacaagatct tgttgcattg gtgcaggatg
     2881 atgatacagc agatcaagga gttatctctg ccaatacctc aaatttggat gatttctacc
     2941 cagcagaaga agacaccaaa caaaatgcaa ataacactag aggaaatacc aataaaacac
     3001 agaaagatgc tggagtaaat gaaaaggcaa gagagaaatt ttatgaggct aaactacagc
     3061 agcaacagag agagctcaaa caattgcagg aagaaagaaa gaaactgatt gagattcaag
     3121 agaaaattca agcattgcaa aaggcatgtc ctgacctaca gctgtcagcc actagtgcag
     3181 gtaattgtcc cacaaaaaaa tatatgccag ctgttacttc aaccccaact gttaatgaaa
     3241 atgaagccag tacaagcaga tctgcttttg aacctgatga tccttcagtg gtagataatg
     3301 agttgtggtc agaaatgcga agacacgaaa tgttaaggga agagctgcga cagagaagaa
     3361 agcagcttga agctttgatg gctgaacatc agaggaggca aggtctggct gaaactacat
     3421 ctccagtggc tgtttcactg agaagtgatg ggtctgagaa cctgtgtacg cctcaacaga
     3481 gtagaacaga aaaaacaatg gcaacttggg gaggttctat ccagtgtgca ctagatggag
     3541 aaggagatga agatggttac ctttctgaag cagttgttcg gacagatgaa gacgaggagg
     3601 aggaggagca agacgccggc tcccatgata gcttttccgt gtgtcctcct agcagcgcaa
     3661 atcataactc ctataatgta aaggaaacta aaaataggtg gaagaacaat cgcccttttt
     3721 cagcagatgg aaattatcgt cctttagcca ggacaagaca acagaatatc agcatgcagc
     3781 gtcaggaaaa ccttcgctgg gtgtcagaac tctcttatgt agaagagaaa gaacagtggc
     3841 aagaacaaat caatcagcta aagaaacaac ttgatttcag tgtcagtatt tgtcagactt
     3901 tgatgcaaga ccagcagact ctgtcttgtc tgctacaaac tcttctcacg ggcccttaca
     3961 gtgttatgcc cagcaatgtt gcatctcctc aagtacacct tataatgcac cagttgaacc
     4021 agtgctacac ccagctaaca tggcaacaga ataatgtaca aaggttgaag caaacgctaa
     4081 atgaacttat gcgccaacaa aatcatccag aaaaacctgg aagcaaggaa agagtcagta
     4141 gtgcatcaca ccctccttct cccagtttat tttgtccttt cagctttcca gcacagcctg
     4201 taaatctgtt caacctaccg gggtttacta atttttcatc atttgcacca ggtatgaatt
     4261 tcagcccttt atttccttct aattttggag atttttctca aaatatttct acacccactg
     4321 aacagcagca accattagcc cagaatcttt cagggaaaac agaatacatg gcttttccaa
     4381 aaccttttga aagtagttct tctgttggag cagaaaaaca aaggaatcaa aaacagcccg
     4441 aagaggaggt ggagaacagt aggacaccat ggttatatga ccaagaaggt gaagtagaaa
     4501 aaccatttct caagactgga tgtgcagtgt ctgtaaagaa aacaacaaat agtaatcgca
     4561 aaaatcaatt agataccagt aggagaagac gccaatttga tgaagagtcg ttagaaagct
     4621 ttagcagtat gcctgaccca gtagatccaa caacagtaac taaaacattc aagtcaagaa
     4681 aagcatctgc acaggccagc ctggcatcta aagataaaac tcccaaatca aagagtaaga
     4741 agaggcattc tactcagctg aaaagcagag ttaaaaatat tgggtatgaa agtgccagta
     4801 tgtctagcac atgtgaacct tgcaaaagta ggaacagaca ttcagcccag actgaagagc
     4861 ctgttcaagc aaaagtattc agcagaaaga atcatgagca gctggaaaaa gtactaagat
     4921 atagtaggtc tacagaaatg tcttcagcac atgctaggag aatactacag caatctaaca
     4981 gaaatgcatg caatgaagcg ccagaaaccg ggagtgattt ttccatgttt gaagctttgc
     5041 gggataccat ttattctgaa gtagctacgt tgatttctca aaatgaatct cgtccacatt
     5101 ttcttattga actcttccat gaacttcagc tactgaatac agactatttg agacagaggg
     5161 ctttatatgc cttgcaggac atagtatcca gacatatttc tgagaaccat gaaaaagaag
     5221 gggaaaacgt aaagtcagtg aattctggta cttggatagc atcaaactca gaacttactc
     5281 ccagtgaaag ccttgctact actgatgatg aaacttttga gaagaacttt gagagagaaa
     5341 cacataaaat aagtgagcaa aatgatgctg ataatgctag tgtcacgtct gtatcttcaa
     5401 attttgagcc ttttgcaaca gatgatctgg gtaacactgt gattcactta gatcaagcat
     5461 tagccagaat gagagaatat gagcgtatga agactgagac tgaaagtaac acaaatgtca
     5521 gatgcacctg caggattata gaggatgagg atggtgctgc tgccccgact acggttgata
     5581 gtttagaagt ggaaactcct attattgaaa atcatagttc acagcaatct gtaagtgaag
     5641 tttctaccgt cccatgtcct agaattgata cacagcaact ggaccggcaa attaaagcaa
     5701 ttatgaaaga agtcattccc tttttgaagg agcacatgga tgaagtatgc tcttctcaac
     5761 ttctaacctc agtaagacgc atggttttga ctcttaccca gcaaaacgat gagagcaaag
     5821 agtttgtaaa gttctttcat aaacaacttg gaagtatatt acaggattca ctggcaaaat
     5881 ttgctggcag aaaactgaaa gattgtggag aagatcttct tgtagagata tctgaagtgt
     5941 tatttaatga attggctttc tttaaactca tgcaagattt ggataataat agtataactg
     6001 ttaaacagag atgcaaaagg aaaattgaag cagctggagt gatacagtct tacgcaaaag
     6061 aggccaaaag gattcttgaa ggagatcatg gctcacctgc tggagaaatt gatgatgaag
     6121 acaaagataa ggatgagact gaaacagtta aacagagtca aacatctgag gtttatgatg
     6181 gtgacggtcc caaaaatgtg agctctgatg tctctgatca agaggaagat gaagaaagtg
     6241 aagaatgtcc agtgtctatt aatttgtcca aagctgaaac tcaggctttg actaattatg
     6301 gaagtggaga agatgagaat gaagatgaag aaatagaaga atttgaagag ggacctgtag
     6361 atgtccagac ttcactgcag gctaacactg aaactacaga agaaaatgaa catgacgatc
     6421 aggttccaca gcatgatttt gaaaaatcag cggaaagcaa aaatgtccca tcagaacaag
     6481 aacccactac tagtaaagat gaccaagata gcactcctgt gaagccctgt tacctcaata
     6541 tcttggaaaa tgagcaacct ttaaacagca ctgtccaaaa ggacgctctt actaccatcg
     6601 attcatctaa tcagcctaac gctttgcctt tacctttaac tgaaattgaa accttggtgc
     6661 ctagagtcaa agaagttaaa tccgcccagg aaactcctga aagctctttg gctggaagtc
     6721 ctgatactga atctccagtg ttagtgaatg actatgaagc agaatctggt aacataagtc
     6781 aaaaatctga tgaagaagac tttgtgaaag ttgaagattt accacttaaa ctgacaatat
     6841 attcagaggc agatctaagg aagaaaatgg tagaagaaga acagaaaaac catttatctg
     6901 gtgaaatatt acgtgaaatg cagactgaag aactagctgg gaattctcag acactaaaag
     6961 aacctgaaac agtgggagcc caaagtacat gagatgtctt cagaggctca tctaactctc
     7021 tttacatagt caatgcatat atggaaatgg cactaaataa acatctgttt tgatctgtaa
     7081 aaaatgtaaa ttagtttgac actgcatttt tggtaggtgt gctaatttct gcccatggca
     7141 gtttaaaaca tcaaaaactg aattctggac agattcaagc cttgatacac tgtggggttt
     7201 ttttcttttt ctttctgtca ttttttttgg tcttgatttt ttttccccat tgtgatgttt
     7261 ggtaacgtta aatttaaaat gtagttttaa ataaagtttg gacttaacct gtaaactatc
     7321 ttttttggaa attatgttga attctataca gcaagtcact gttctgtata attaggctat
     7381 tcaaagagca atggtcaaga gttagagaaa tatactattt attgtaaagc ccagccttta
     7441 ggccaggctt ccaaataatg ccagtgttgc tgctattggg tctcatgttc ttttagatac
     7501 ttgcatgtct tattcctgtg caagaatagg gcaggttata aaggtttcca ggttattgta
     7561 gaatatatat taatattcta ttcaaattgg atgataagtt tagaatactt gtccttagta
     7621 cgtagaactt acataattat ctattagata aatattttct agaatttcaa ttcatatctg
     7681 tgttgcctca gtctaaaagt aaaaaaaaaa aagttttcta taattagtat ttctgcacag
     7741 ccaagtaaag taacattgtg attaatttta aaaggaaaac caagatcttt aaagtagaga
     7801 ttaatagaac taaatttatg taccagcaca ttaaagttct atatgccttc ggacaacctt
     7861 gccttttgag atgatagttt agccaaagca tagcagttgc ttctgtatgc agtgagagag
     7921 aagcaggttc gcagaggaag ttttgagtaa cgaaaatcta catgacctct ttgtcatgaa
     7981 gtaaatcagc ttctaaaggt ggtgtagctt tagatcccaa acttgccaca tacccagtaa
     8041 ggcttcacat agccagttaa caattaagtc atctttacag attccttctt gaataaaata
     8101 tgaagaattg ttccaaatag tcttttaagt ttgtcaacaa ttaactgaag tatcccataa
     8161 gaagagaatt tggttggtat tcctttgaaa ttcttgcctg atacctcagt gtaaaagtcc
     8221 agtcagggag tattaaatga ggatttccct atgagggcat tgactgtatt gctccataac
     8281 ttaaattatg ggagacatat atctccaact ttctgaatta gtaaaactta ttcagaaaac
     8341 tgtcatccca gaaacaggaa ttcttattca attggcttga cttcagggaa actgaaacat
     8401 aagttacatt atatgtatac ttaagttctg tatttgtttt ctagactctg tacagaaact
     8461 tcattttgat actcaagcca agccttacat attaagactg tctgtctctc tctctgcatg
     8521 cattttaaag atcgatacag tggaagcgtt gtacttatac cttagttatt actgtagtat
     8581 ctgtgaaccg tatcaaactt gcttatttga cttatgttat agctgttgta atatggtctg
     8641 tttttttcta ttatagtaga taatttagtt ttaaaatacc taggacttga gagcagataa
     8701 cttgtttaat atgtttttcc ctggtaactg ttgctaaagg gttaggcatt gaatattact
     8761 gtttgtcttc atttttaagt taaaaatttg gttagagata aaagaggaag aaaaggtcaa
     8821 aatgagtgag agagaaacct cgcaggttga aataatgcct aaaagagtga gctcgccaga
     8881 ctgtgcagca ggcactcttt gtattttgta acattcactt tgggtaaatg ctttttcact
     8941 gttaataaat gtatatcctg cataca
//
LOCUS       XM_032618237            7572 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X4, mRNA.
ACCESSION   XM_032618237
VERSION     XM_032618237.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7572
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7572
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6950
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X4"
                     /protein_id="XP_032474128.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLA
                     DCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKI
                     SRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGN
                     TNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQ
                     LSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEML
                     REELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATW
                     GGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVK
                     ETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQ
                     LKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYT
                     QLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVN
                     LFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFP
                     KPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNS
                     NRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPK
                     SKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQ
                     LEKVLRYSRSTEMSSETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQL
                     LNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTD
                     DETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREY
                     ERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVP
                     CPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFV
                     KFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITV
                     KQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVY
                     DGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEE
                     GPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVK
                     PCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETP
                     ESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMV
                     EEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4953..6851
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagcag
     2641 attgtcgata caatagagaa caagaacagg ggattcacgt tgcacaaggt gaaggtgagg
     2701 aggaggaaga ggaagaagca gaagatgagg cagtcagtgg agcgtcatta tctagtcatc
     2761 ggagcagtct ggttgatgag acgcctgaag atgctgaatt tgaacagaag atcagcagac
     2821 ttatggctgc aaaacagaaa cttagacagt tacaagatct tgttgcattg gtgcaggatg
     2881 atgatacagc agatcaagga gttatctctg ccaatacctc aaatttggat gatttctacc
     2941 cagcagaaga agacaccaaa caaaatgcaa ataacactag aggaaatacc aataaaacac
     3001 agaaagatgc tggagtaaat gaaaaggcaa gagagaaatt ttatgaggct aaactacagc
     3061 agcaacagag agagctcaaa caattgcagg aagaaagaaa gaaactgatt gagattcaag
     3121 agaaaattca agcattgcaa aaggcatgtc ctgacctaca gctgtcagcc actagtgcag
     3181 gtaattgtcc cacaaaaaaa tatatgccag ctgttacttc aaccccaact gttaatgaaa
     3241 atgaagccag tacaagcaga tctgcttttg aacctgatga tccttcagtg gtagataatg
     3301 agttgtggtc agaaatgcga agacacgaaa tgttaaggga agagctgcga cagagaagaa
     3361 agcagcttga agctttgatg gctgaacatc agaggaggca aggtctggct gaaactacat
     3421 ctccagtggc tgtttcactg agaagtgatg ggtctgagaa cctgtgtacg cctcaacaga
     3481 gtagaacaga aaaaacaatg gcaacttggg gaggttctat ccagtgtgca ctagatggag
     3541 aaggagatga agatggttac ctttctgaag cagttgttcg gacagatgaa gacgaggagg
     3601 aggaggagca agacgccggc tcccatgata gcttttccgt gtgtcctcct agcagcgcaa
     3661 atcataactc ctataatgta aaggaaacta aaaataggtg gaagaacaat cgcccttttt
     3721 cagcagatgg aaattatcgt cctttagcca ggacaagaca acagaatatc agcatgcagc
     3781 gtcaggaaaa ccttcgctgg gtgtcagaac tctcttatgt agaagagaaa gaacagtggc
     3841 aagaacaaat caatcagcta aagaaacaac ttgatttcag tgtcagtatt tgtcagactt
     3901 tgatgcaaga ccagcagact ctgtcttgtc tgctacaaac tcttctcacg ggcccttaca
     3961 gtgttatgcc cagcaatgtt gcatctcctc aagtacacct tataatgcac cagttgaacc
     4021 agtgctacac ccagctaaca tggcaacaga ataatgtaca aaggttgaag caaacgctaa
     4081 atgaacttat gcgccaacaa aatcatccag aaaaacctgg aagcaaggaa agagtcagta
     4141 gtgcatcaca ccctccttct cccagtttat tttgtccttt cagctttcca gcacagcctg
     4201 taaatctgtt caacctaccg gggtttacta atttttcatc atttgcacca ggtatgaatt
     4261 tcagcccttt atttccttct aattttggag atttttctca aaatatttct acacccactg
     4321 aacagcagca accattagcc cagaatcttt cagggaaaac agaatacatg gcttttccaa
     4381 aaccttttga aagtagttct tctgttggag cagaaaaaca aaggaatcaa aaacagcccg
     4441 aagaggaggt ggagaacagt aggacaccat ggttatatga ccaagaaggt gaagtagaaa
     4501 aaccatttct caagactgga tgtgcagtgt ctgtaaagaa aacaacaaat agtaatcgca
     4561 aaaatcaatt agataccagt aggagaagac gccaatttga tgaagagtcg ttagaaagct
     4621 ttagcagtat gcctgaccca gtagatccaa caacagtaac taaaacattc aagtcaagaa
     4681 aagcatctgc acaggccagc ctggcatcta aagataaaac tcccaaatca aagagtaaga
     4741 agaggcattc tactcagctg aaaagcagag ttaaaaatat tgggtatgaa agtgccagta
     4801 tgtctagcac atgtgaacct tgcaaaagta ggaacagaca ttcagcccag actgaagagc
     4861 ctgttcaagc aaaagtattc agcagaaaga atcatgagca gctggaaaaa gtactaagat
     4921 atagtaggtc tacagaaatg tcttcagaaa ccgggagtga tttttccatg tttgaagctt
     4981 tgcgggatac catttattct gaagtagcta cgttgatttc tcaaaatgaa tctcgtccac
     5041 attttcttat tgaactcttc catgaacttc agctactgaa tacagactat ttgagacaga
     5101 gggctttata tgccttgcag gacatagtat ccagacatat ttctgagaac catgaaaaag
     5161 aaggggaaaa cgtaaagtca gtgaattctg gtacttggat agcatcaaac tcagaactta
     5221 ctcccagtga aagccttgct actactgatg atgaaacttt tgagaagaac tttgagagag
     5281 aaacacataa aataagtgag caaaatgatg ctgataatgc tagtgtcacg tctgtatctt
     5341 caaattttga gccttttgca acagatgatc tgggtaacac tgtgattcac ttagatcaag
     5401 cattagccag aatgagagaa tatgagcgta tgaagactga gactgaaagt aacacaaatg
     5461 tcagatgcac ctgcaggatt atagaggatg aggatggtgc tgctgccccg actacggttg
     5521 atagtttaga agtggaaact cctattattg aaaatcatag ttcacagcaa tctgtaagtg
     5581 aagtttctac cgtcccatgt cctagaattg atacacagca actggaccgg caaattaaag
     5641 caattatgaa agaagtcatt ccctttttga aggagcacat ggatgaagta tgctcttctc
     5701 aacttctaac ctcagtaaga cgcatggttt tgactcttac ccagcaaaac gatgagagca
     5761 aagagtttgt aaagttcttt cataaacaac ttggaagtat attacaggat tcactggcaa
     5821 aatttgctgg cagaaaactg aaagattgtg gagaagatct tcttgtagag atatctgaag
     5881 tgttatttaa tgaattggct ttctttaaac tcatgcaaga tttggataat aatagtataa
     5941 ctgttaaaca gagatgcaaa aggaaaattg aagcagctgg agtgatacag tcttacgcaa
     6001 aagaggccaa aaggattctt gaaggagatc atggctcacc tgctggagaa attgatgatg
     6061 aagacaaaga taaggatgag actgaaacag ttaaacagag tcaaacatct gaggtttatg
     6121 atggtgacgg tcccaaaaat gtgagctctg atgtctctga tcaagaggaa gatgaagaaa
     6181 gtgaagaatg tccagtgtct attaatttgt ccaaagctga aactcaggct ttgactaatt
     6241 atggaagtgg agaagatgag aatgaagatg aagaaataga agaatttgaa gagggacctg
     6301 tagatgtcca gacttcactg caggctaaca ctgaaactac agaagaaaat gaacatgacg
     6361 atcaggttcc acagcatgat tttgaaaaat cagcggaaag caaaaatgtc ccatcagaac
     6421 aagaacccac tactagtaaa gatgaccaag atagcactcc tgtgaagccc tgttacctca
     6481 atatcttgga aaatgagcaa cctttaaaca gcactgtcca aaaggacgct cttactacca
     6541 tcgattcatc taatcagcct aacgctttgc ctttaccttt aactgaaatt gaaaccttgg
     6601 tgcctagagt caaagaagtt aaatccgccc aggaaactcc tgaaagctct ttggctggaa
     6661 gtcctgatac tgaatctcca gtgttagtga atgactatga agcagaatct ggtaacataa
     6721 gtcaaaaatc tgatgaagaa gactttgtga aagttgaaga tttaccactt aaactgacaa
     6781 tatattcaga ggcagatcta aggaagaaaa tggtagaaga agaacagaaa aaccatttat
     6841 ctggtgaaat attacgtgaa atgcagactg aagaactagc tgggaattct cagacactaa
     6901 aagaacctga gccaagttat agtcccagat ttccttcttt atgggtctaa tagcacaacc
     6961 caagggccac tcggaggagc acatttcttg catcaaggtc aaagattttc tttttgttca
     7021 tcaattcatc agctgattaa actcatataa gattttttgt tttttttaag aaatagggtg
     7081 aagagaagtg caaaccaaat gtcaaacctt cagttaattc ctcactcttc agcccatttc
     7141 tgcctgttag gactcagttg gtaccctctg cactgccgcc tgtcctagtg tgtctaggct
     7201 gcagcttcct cccctcttct ctgtgcctcc atctcctttg agcatcctgg gaacttgttg
     7261 tggttcgcca tcctctgttc tctcacagcc actcttcttc tgttctgggt ttattcattt
     7321 ttatacttct tttctttttt ttttctagtg gggctttctt ttggagagag aggaagtatc
     7381 tgcttagtct gccgtcttaa aatggaaacc cttacctgtg ccttttaaac tcttgctgtg
     7441 tgttaccagg gaattattgt agcaaactaa gtttcttttg taataacttt atattagaaa
     7501 tgaaagtttt aatggaagag agcagtatta aactaaattc tataaggtct taacttagta
     7561 agtaatttat aa
//
LOCUS       XM_032618239            7568 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X5, mRNA.
ACCESSION   XM_032618239
VERSION     XM_032618239.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7568
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7568
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6947
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X5"
                     /protein_id="XP_032474130.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLD
                     CRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKIS
                     RLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNT
                     NKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQL
                     SATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLR
                     EELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWG
                     GSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKE
                     TKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQL
                     KKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQ
                     LTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNL
                     FNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPK
                     PFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSN
                     RKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKS
                     KSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQL
                     EKVLRYSRSTEMSSETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLL
                     NTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDD
                     ETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYE
                     RMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPC
                     PRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVK
                     FFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVK
                     QRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYD
                     GDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEG
                     PVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKP
                     CYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPE
                     SSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVE
                     EEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4950..6848
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagatt
     2641 gtcgatacaa tagagaacaa gaacagggga ttcacgttgc acaaggtgaa ggtgaggagg
     2701 aggaagagga agaagcagaa gatgaggcag tcagtggagc gtcattatct agtcatcgga
     2761 gcagtctggt tgatgagacg cctgaagatg ctgaatttga acagaagatc agcagactta
     2821 tggctgcaaa acagaaactt agacagttac aagatcttgt tgcattggtg caggatgatg
     2881 atacagcaga tcaaggagtt atctctgcca atacctcaaa tttggatgat ttctacccag
     2941 cagaagaaga caccaaacaa aatgcaaata acactagagg aaataccaat aaaacacaga
     3001 aagatgctgg agtaaatgaa aaggcaagag agaaatttta tgaggctaaa ctacagcagc
     3061 aacagagaga gctcaaacaa ttgcaggaag aaagaaagaa actgattgag attcaagaga
     3121 aaattcaagc attgcaaaag gcatgtcctg acctacagct gtcagccact agtgcaggta
     3181 attgtcccac aaaaaaatat atgccagctg ttacttcaac cccaactgtt aatgaaaatg
     3241 aagccagtac aagcagatct gcttttgaac ctgatgatcc ttcagtggta gataatgagt
     3301 tgtggtcaga aatgcgaaga cacgaaatgt taagggaaga gctgcgacag agaagaaagc
     3361 agcttgaagc tttgatggct gaacatcaga ggaggcaagg tctggctgaa actacatctc
     3421 cagtggctgt ttcactgaga agtgatgggt ctgagaacct gtgtacgcct caacagagta
     3481 gaacagaaaa aacaatggca acttggggag gttctatcca gtgtgcacta gatggagaag
     3541 gagatgaaga tggttacctt tctgaagcag ttgttcggac agatgaagac gaggaggagg
     3601 aggagcaaga cgccggctcc catgatagct tttccgtgtg tcctcctagc agcgcaaatc
     3661 ataactccta taatgtaaag gaaactaaaa ataggtggaa gaacaatcgc cctttttcag
     3721 cagatggaaa ttatcgtcct ttagccagga caagacaaca gaatatcagc atgcagcgtc
     3781 aggaaaacct tcgctgggtg tcagaactct cttatgtaga agagaaagaa cagtggcaag
     3841 aacaaatcaa tcagctaaag aaacaacttg atttcagtgt cagtatttgt cagactttga
     3901 tgcaagacca gcagactctg tcttgtctgc tacaaactct tctcacgggc ccttacagtg
     3961 ttatgcccag caatgttgca tctcctcaag tacaccttat aatgcaccag ttgaaccagt
     4021 gctacaccca gctaacatgg caacagaata atgtacaaag gttgaagcaa acgctaaatg
     4081 aacttatgcg ccaacaaaat catccagaaa aacctggaag caaggaaaga gtcagtagtg
     4141 catcacaccc tccttctccc agtttatttt gtcctttcag ctttccagca cagcctgtaa
     4201 atctgttcaa cctaccgggg tttactaatt tttcatcatt tgcaccaggt atgaatttca
     4261 gccctttatt tccttctaat tttggagatt tttctcaaaa tatttctaca cccactgaac
     4321 agcagcaacc attagcccag aatctttcag ggaaaacaga atacatggct tttccaaaac
     4381 cttttgaaag tagttcttct gttggagcag aaaaacaaag gaatcaaaaa cagcccgaag
     4441 aggaggtgga gaacagtagg acaccatggt tatatgacca agaaggtgaa gtagaaaaac
     4501 catttctcaa gactggatgt gcagtgtctg taaagaaaac aacaaatagt aatcgcaaaa
     4561 atcaattaga taccagtagg agaagacgcc aatttgatga agagtcgtta gaaagcttta
     4621 gcagtatgcc tgacccagta gatccaacaa cagtaactaa aacattcaag tcaagaaaag
     4681 catctgcaca ggccagcctg gcatctaaag ataaaactcc caaatcaaag agtaagaaga
     4741 ggcattctac tcagctgaaa agcagagtta aaaatattgg gtatgaaagt gccagtatgt
     4801 ctagcacatg tgaaccttgc aaaagtagga acagacattc agcccagact gaagagcctg
     4861 ttcaagcaaa agtattcagc agaaagaatc atgagcagct ggaaaaagta ctaagatata
     4921 gtaggtctac agaaatgtct tcagaaaccg ggagtgattt ttccatgttt gaagctttgc
     4981 gggataccat ttattctgaa gtagctacgt tgatttctca aaatgaatct cgtccacatt
     5041 ttcttattga actcttccat gaacttcagc tactgaatac agactatttg agacagaggg
     5101 ctttatatgc cttgcaggac atagtatcca gacatatttc tgagaaccat gaaaaagaag
     5161 gggaaaacgt aaagtcagtg aattctggta cttggatagc atcaaactca gaacttactc
     5221 ccagtgaaag ccttgctact actgatgatg aaacttttga gaagaacttt gagagagaaa
     5281 cacataaaat aagtgagcaa aatgatgctg ataatgctag tgtcacgtct gtatcttcaa
     5341 attttgagcc ttttgcaaca gatgatctgg gtaacactgt gattcactta gatcaagcat
     5401 tagccagaat gagagaatat gagcgtatga agactgagac tgaaagtaac acaaatgtca
     5461 gatgcacctg caggattata gaggatgagg atggtgctgc tgccccgact acggttgata
     5521 gtttagaagt ggaaactcct attattgaaa atcatagttc acagcaatct gtaagtgaag
     5581 tttctaccgt cccatgtcct agaattgata cacagcaact ggaccggcaa attaaagcaa
     5641 ttatgaaaga agtcattccc tttttgaagg agcacatgga tgaagtatgc tcttctcaac
     5701 ttctaacctc agtaagacgc atggttttga ctcttaccca gcaaaacgat gagagcaaag
     5761 agtttgtaaa gttctttcat aaacaacttg gaagtatatt acaggattca ctggcaaaat
     5821 ttgctggcag aaaactgaaa gattgtggag aagatcttct tgtagagata tctgaagtgt
     5881 tatttaatga attggctttc tttaaactca tgcaagattt ggataataat agtataactg
     5941 ttaaacagag atgcaaaagg aaaattgaag cagctggagt gatacagtct tacgcaaaag
     6001 aggccaaaag gattcttgaa ggagatcatg gctcacctgc tggagaaatt gatgatgaag
     6061 acaaagataa ggatgagact gaaacagtta aacagagtca aacatctgag gtttatgatg
     6121 gtgacggtcc caaaaatgtg agctctgatg tctctgatca agaggaagat gaagaaagtg
     6181 aagaatgtcc agtgtctatt aatttgtcca aagctgaaac tcaggctttg actaattatg
     6241 gaagtggaga agatgagaat gaagatgaag aaatagaaga atttgaagag ggacctgtag
     6301 atgtccagac ttcactgcag gctaacactg aaactacaga agaaaatgaa catgacgatc
     6361 aggttccaca gcatgatttt gaaaaatcag cggaaagcaa aaatgtccca tcagaacaag
     6421 aacccactac tagtaaagat gaccaagata gcactcctgt gaagccctgt tacctcaata
     6481 tcttggaaaa tgagcaacct ttaaacagca ctgtccaaaa ggacgctctt actaccatcg
     6541 attcatctaa tcagcctaac gctttgcctt tacctttaac tgaaattgaa accttggtgc
     6601 ctagagtcaa agaagttaaa tccgcccagg aaactcctga aagctctttg gctggaagtc
     6661 ctgatactga atctccagtg ttagtgaatg actatgaagc agaatctggt aacataagtc
     6721 aaaaatctga tgaagaagac tttgtgaaag ttgaagattt accacttaaa ctgacaatat
     6781 attcagaggc agatctaagg aagaaaatgg tagaagaaga acagaaaaac catttatctg
     6841 gtgaaatatt acgtgaaatg cagactgaag aactagctgg gaattctcag acactaaaag
     6901 aacctgagcc aagttatagt cccagatttc cttctttatg ggtctaatag cacaacccaa
     6961 gggccactcg gaggagcaca tttcttgcat caaggtcaaa gattttcttt ttgttcatca
     7021 attcatcagc tgattaaact catataagat tttttgtttt ttttaagaaa tagggtgaag
     7081 agaagtgcaa accaaatgtc aaaccttcag ttaattcctc actcttcagc ccatttctgc
     7141 ctgttaggac tcagttggta ccctctgcac tgccgcctgt cctagtgtgt ctaggctgca
     7201 gcttcctccc ctcttctctg tgcctccatc tcctttgagc atcctgggaa cttgttgtgg
     7261 ttcgccatcc tctgttctct cacagccact cttcttctgt tctgggttta ttcattttta
     7321 tacttctttt cttttttttt tctagtgggg ctttcttttg gagagagagg aagtatctgc
     7381 ttagtctgcc gtcttaaaat ggaaaccctt acctgtgcct tttaaactct tgctgtgtgt
     7441 taccagggaa ttattgtagc aaactaagtt tcttttgtaa taactttata ttagaaatga
     7501 aagttttaat ggaagagagc agtattaaac taaattctat aaggtcttaa cttagtaagt
     7561 aatttata
//
LOCUS       XM_032618240            8909 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X6, mRNA.
ACCESSION   XM_032618240
VERSION     XM_032618240.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8909
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8909
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 29 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6935
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X6"
                     /protein_id="XP_032474131.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLA
                     DCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKI
                     SRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGN
                     TNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQ
                     LSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEML
                     REELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATW
                     GGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVK
                     ETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQ
                     LKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYT
                     QLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVN
                     LFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFP
                     KPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNS
                     NRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPK
                     SKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQ
                     LEKVLRYSRSTEMSSETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQL
                     LNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTD
                     DETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREY
                     ERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVP
                     CPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFV
                     KFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITV
                     KQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVY
                     DGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEE
                     GPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVK
                     PCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETP
                     ESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMV
                     EEEQKNHLSGEILREMQTEELAGNSQTLKEPETVGAQST"
     misc_feature    4953..6851
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagcag
     2641 attgtcgata caatagagaa caagaacagg ggattcacgt tgcacaaggt gaaggtgagg
     2701 aggaggaaga ggaagaagca gaagatgagg cagtcagtgg agcgtcatta tctagtcatc
     2761 ggagcagtct ggttgatgag acgcctgaag atgctgaatt tgaacagaag atcagcagac
     2821 ttatggctgc aaaacagaaa cttagacagt tacaagatct tgttgcattg gtgcaggatg
     2881 atgatacagc agatcaagga gttatctctg ccaatacctc aaatttggat gatttctacc
     2941 cagcagaaga agacaccaaa caaaatgcaa ataacactag aggaaatacc aataaaacac
     3001 agaaagatgc tggagtaaat gaaaaggcaa gagagaaatt ttatgaggct aaactacagc
     3061 agcaacagag agagctcaaa caattgcagg aagaaagaaa gaaactgatt gagattcaag
     3121 agaaaattca agcattgcaa aaggcatgtc ctgacctaca gctgtcagcc actagtgcag
     3181 gtaattgtcc cacaaaaaaa tatatgccag ctgttacttc aaccccaact gttaatgaaa
     3241 atgaagccag tacaagcaga tctgcttttg aacctgatga tccttcagtg gtagataatg
     3301 agttgtggtc agaaatgcga agacacgaaa tgttaaggga agagctgcga cagagaagaa
     3361 agcagcttga agctttgatg gctgaacatc agaggaggca aggtctggct gaaactacat
     3421 ctccagtggc tgtttcactg agaagtgatg ggtctgagaa cctgtgtacg cctcaacaga
     3481 gtagaacaga aaaaacaatg gcaacttggg gaggttctat ccagtgtgca ctagatggag
     3541 aaggagatga agatggttac ctttctgaag cagttgttcg gacagatgaa gacgaggagg
     3601 aggaggagca agacgccggc tcccatgata gcttttccgt gtgtcctcct agcagcgcaa
     3661 atcataactc ctataatgta aaggaaacta aaaataggtg gaagaacaat cgcccttttt
     3721 cagcagatgg aaattatcgt cctttagcca ggacaagaca acagaatatc agcatgcagc
     3781 gtcaggaaaa ccttcgctgg gtgtcagaac tctcttatgt agaagagaaa gaacagtggc
     3841 aagaacaaat caatcagcta aagaaacaac ttgatttcag tgtcagtatt tgtcagactt
     3901 tgatgcaaga ccagcagact ctgtcttgtc tgctacaaac tcttctcacg ggcccttaca
     3961 gtgttatgcc cagcaatgtt gcatctcctc aagtacacct tataatgcac cagttgaacc
     4021 agtgctacac ccagctaaca tggcaacaga ataatgtaca aaggttgaag caaacgctaa
     4081 atgaacttat gcgccaacaa aatcatccag aaaaacctgg aagcaaggaa agagtcagta
     4141 gtgcatcaca ccctccttct cccagtttat tttgtccttt cagctttcca gcacagcctg
     4201 taaatctgtt caacctaccg gggtttacta atttttcatc atttgcacca ggtatgaatt
     4261 tcagcccttt atttccttct aattttggag atttttctca aaatatttct acacccactg
     4321 aacagcagca accattagcc cagaatcttt cagggaaaac agaatacatg gcttttccaa
     4381 aaccttttga aagtagttct tctgttggag cagaaaaaca aaggaatcaa aaacagcccg
     4441 aagaggaggt ggagaacagt aggacaccat ggttatatga ccaagaaggt gaagtagaaa
     4501 aaccatttct caagactgga tgtgcagtgt ctgtaaagaa aacaacaaat agtaatcgca
     4561 aaaatcaatt agataccagt aggagaagac gccaatttga tgaagagtcg ttagaaagct
     4621 ttagcagtat gcctgaccca gtagatccaa caacagtaac taaaacattc aagtcaagaa
     4681 aagcatctgc acaggccagc ctggcatcta aagataaaac tcccaaatca aagagtaaga
     4741 agaggcattc tactcagctg aaaagcagag ttaaaaatat tgggtatgaa agtgccagta
     4801 tgtctagcac atgtgaacct tgcaaaagta ggaacagaca ttcagcccag actgaagagc
     4861 ctgttcaagc aaaagtattc agcagaaaga atcatgagca gctggaaaaa gtactaagat
     4921 atagtaggtc tacagaaatg tcttcagaaa ccgggagtga tttttccatg tttgaagctt
     4981 tgcgggatac catttattct gaagtagcta cgttgatttc tcaaaatgaa tctcgtccac
     5041 attttcttat tgaactcttc catgaacttc agctactgaa tacagactat ttgagacaga
     5101 gggctttata tgccttgcag gacatagtat ccagacatat ttctgagaac catgaaaaag
     5161 aaggggaaaa cgtaaagtca gtgaattctg gtacttggat agcatcaaac tcagaactta
     5221 ctcccagtga aagccttgct actactgatg atgaaacttt tgagaagaac tttgagagag
     5281 aaacacataa aataagtgag caaaatgatg ctgataatgc tagtgtcacg tctgtatctt
     5341 caaattttga gccttttgca acagatgatc tgggtaacac tgtgattcac ttagatcaag
     5401 cattagccag aatgagagaa tatgagcgta tgaagactga gactgaaagt aacacaaatg
     5461 tcagatgcac ctgcaggatt atagaggatg aggatggtgc tgctgccccg actacggttg
     5521 atagtttaga agtggaaact cctattattg aaaatcatag ttcacagcaa tctgtaagtg
     5581 aagtttctac cgtcccatgt cctagaattg atacacagca actggaccgg caaattaaag
     5641 caattatgaa agaagtcatt ccctttttga aggagcacat ggatgaagta tgctcttctc
     5701 aacttctaac ctcagtaaga cgcatggttt tgactcttac ccagcaaaac gatgagagca
     5761 aagagtttgt aaagttcttt cataaacaac ttggaagtat attacaggat tcactggcaa
     5821 aatttgctgg cagaaaactg aaagattgtg gagaagatct tcttgtagag atatctgaag
     5881 tgttatttaa tgaattggct ttctttaaac tcatgcaaga tttggataat aatagtataa
     5941 ctgttaaaca gagatgcaaa aggaaaattg aagcagctgg agtgatacag tcttacgcaa
     6001 aagaggccaa aaggattctt gaaggagatc atggctcacc tgctggagaa attgatgatg
     6061 aagacaaaga taaggatgag actgaaacag ttaaacagag tcaaacatct gaggtttatg
     6121 atggtgacgg tcccaaaaat gtgagctctg atgtctctga tcaagaggaa gatgaagaaa
     6181 gtgaagaatg tccagtgtct attaatttgt ccaaagctga aactcaggct ttgactaatt
     6241 atggaagtgg agaagatgag aatgaagatg aagaaataga agaatttgaa gagggacctg
     6301 tagatgtcca gacttcactg caggctaaca ctgaaactac agaagaaaat gaacatgacg
     6361 atcaggttcc acagcatgat tttgaaaaat cagcggaaag caaaaatgtc ccatcagaac
     6421 aagaacccac tactagtaaa gatgaccaag atagcactcc tgtgaagccc tgttacctca
     6481 atatcttgga aaatgagcaa cctttaaaca gcactgtcca aaaggacgct cttactacca
     6541 tcgattcatc taatcagcct aacgctttgc ctttaccttt aactgaaatt gaaaccttgg
     6601 tgcctagagt caaagaagtt aaatccgccc aggaaactcc tgaaagctct ttggctggaa
     6661 gtcctgatac tgaatctcca gtgttagtga atgactatga agcagaatct ggtaacataa
     6721 gtcaaaaatc tgatgaagaa gactttgtga aagttgaaga tttaccactt aaactgacaa
     6781 tatattcaga ggcagatcta aggaagaaaa tggtagaaga agaacagaaa aaccatttat
     6841 ctggtgaaat attacgtgaa atgcagactg aagaactagc tgggaattct cagacactaa
     6901 aagaacctga aacagtggga gcccaaagta catgagatgt cttcagaggc tcatctaact
     6961 ctctttacat agtcaatgca tatatggaaa tggcactaaa taaacatctg ttttgatctg
     7021 taaaaaatgt aaattagttt gacactgcat ttttggtagg tgtgctaatt tctgcccatg
     7081 gcagtttaaa acatcaaaaa ctgaattctg gacagattca agccttgata cactgtgggg
     7141 tttttttctt tttctttctg tcattttttt tggtcttgat tttttttccc cattgtgatg
     7201 tttggtaacg ttaaatttaa aatgtagttt taaataaagt ttggacttaa cctgtaaact
     7261 atcttttttg gaaattatgt tgaattctat acagcaagtc actgttctgt ataattaggc
     7321 tattcaaaga gcaatggtca agagttagag aaatatacta tttattgtaa agcccagcct
     7381 ttaggccagg cttccaaata atgccagtgt tgctgctatt gggtctcatg ttcttttaga
     7441 tacttgcatg tcttattcct gtgcaagaat agggcaggtt ataaaggttt ccaggttatt
     7501 gtagaatata tattaatatt ctattcaaat tggatgataa gtttagaata cttgtcctta
     7561 gtacgtagaa cttacataat tatctattag ataaatattt tctagaattt caattcatat
     7621 ctgtgttgcc tcagtctaaa agtaaaaaaa aaaaagtttt ctataattag tatttctgca
     7681 cagccaagta aagtaacatt gtgattaatt ttaaaaggaa aaccaagatc tttaaagtag
     7741 agattaatag aactaaattt atgtaccagc acattaaagt tctatatgcc ttcggacaac
     7801 cttgcctttt gagatgatag tttagccaaa gcatagcagt tgcttctgta tgcagtgaga
     7861 gagaagcagg ttcgcagagg aagttttgag taacgaaaat ctacatgacc tctttgtcat
     7921 gaagtaaatc agcttctaaa ggtggtgtag ctttagatcc caaacttgcc acatacccag
     7981 taaggcttca catagccagt taacaattaa gtcatcttta cagattcctt cttgaataaa
     8041 atatgaagaa ttgttccaaa tagtctttta agtttgtcaa caattaactg aagtatccca
     8101 taagaagaga atttggttgg tattcctttg aaattcttgc ctgatacctc agtgtaaaag
     8161 tccagtcagg gagtattaaa tgaggatttc cctatgaggg cattgactgt attgctccat
     8221 aacttaaatt atgggagaca tatatctcca actttctgaa ttagtaaaac ttattcagaa
     8281 aactgtcatc ccagaaacag gaattcttat tcaattggct tgacttcagg gaaactgaaa
     8341 cataagttac attatatgta tacttaagtt ctgtatttgt tttctagact ctgtacagaa
     8401 acttcatttt gatactcaag ccaagcctta catattaaga ctgtctgtct ctctctctgc
     8461 atgcatttta aagatcgata cagtggaagc gttgtactta taccttagtt attactgtag
     8521 tatctgtgaa ccgtatcaaa cttgcttatt tgacttatgt tatagctgtt gtaatatggt
     8581 ctgttttttt ctattatagt agataattta gttttaaaat acctaggact tgagagcaga
     8641 taacttgttt aatatgtttt tccctggtaa ctgttgctaa agggttaggc attgaatatt
     8701 actgtttgtc ttcattttta agttaaaaat ttggttagag ataaaagagg aagaaaaggt
     8761 caaaatgagt gagagagaaa cctcgcaggt tgaaataatg cctaaaagag tgagctcgcc
     8821 agactgtgca gcaggcactc tttgtatttt gtaacattca ctttgggtaa atgctttttc
     8881 actgttaata aatgtatatc ctgcataca
//
LOCUS       XM_032618241            8906 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X7, mRNA.
ACCESSION   XM_032618241
VERSION     XM_032618241.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8906
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8906
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 28 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6932
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X7"
                     /protein_id="XP_032474132.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLD
                     CRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKIS
                     RLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNT
                     NKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQL
                     SATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLR
                     EELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWG
                     GSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKE
                     TKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQL
                     KKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQ
                     LTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNL
                     FNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPK
                     PFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSN
                     RKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKS
                     KSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQL
                     EKVLRYSRSTEMSSETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLL
                     NTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDD
                     ETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYE
                     RMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPC
                     PRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVK
                     FFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVK
                     QRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYD
                     GDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEG
                     PVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKP
                     CYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPE
                     SSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVE
                     EEQKNHLSGEILREMQTEELAGNSQTLKEPETVGAQST"
     misc_feature    4950..6848
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagatt
     2641 gtcgatacaa tagagaacaa gaacagggga ttcacgttgc acaaggtgaa ggtgaggagg
     2701 aggaagagga agaagcagaa gatgaggcag tcagtggagc gtcattatct agtcatcgga
     2761 gcagtctggt tgatgagacg cctgaagatg ctgaatttga acagaagatc agcagactta
     2821 tggctgcaaa acagaaactt agacagttac aagatcttgt tgcattggtg caggatgatg
     2881 atacagcaga tcaaggagtt atctctgcca atacctcaaa tttggatgat ttctacccag
     2941 cagaagaaga caccaaacaa aatgcaaata acactagagg aaataccaat aaaacacaga
     3001 aagatgctgg agtaaatgaa aaggcaagag agaaatttta tgaggctaaa ctacagcagc
     3061 aacagagaga gctcaaacaa ttgcaggaag aaagaaagaa actgattgag attcaagaga
     3121 aaattcaagc attgcaaaag gcatgtcctg acctacagct gtcagccact agtgcaggta
     3181 attgtcccac aaaaaaatat atgccagctg ttacttcaac cccaactgtt aatgaaaatg
     3241 aagccagtac aagcagatct gcttttgaac ctgatgatcc ttcagtggta gataatgagt
     3301 tgtggtcaga aatgcgaaga cacgaaatgt taagggaaga gctgcgacag agaagaaagc
     3361 agcttgaagc tttgatggct gaacatcaga ggaggcaagg tctggctgaa actacatctc
     3421 cagtggctgt ttcactgaga agtgatgggt ctgagaacct gtgtacgcct caacagagta
     3481 gaacagaaaa aacaatggca acttggggag gttctatcca gtgtgcacta gatggagaag
     3541 gagatgaaga tggttacctt tctgaagcag ttgttcggac agatgaagac gaggaggagg
     3601 aggagcaaga cgccggctcc catgatagct tttccgtgtg tcctcctagc agcgcaaatc
     3661 ataactccta taatgtaaag gaaactaaaa ataggtggaa gaacaatcgc cctttttcag
     3721 cagatggaaa ttatcgtcct ttagccagga caagacaaca gaatatcagc atgcagcgtc
     3781 aggaaaacct tcgctgggtg tcagaactct cttatgtaga agagaaagaa cagtggcaag
     3841 aacaaatcaa tcagctaaag aaacaacttg atttcagtgt cagtatttgt cagactttga
     3901 tgcaagacca gcagactctg tcttgtctgc tacaaactct tctcacgggc ccttacagtg
     3961 ttatgcccag caatgttgca tctcctcaag tacaccttat aatgcaccag ttgaaccagt
     4021 gctacaccca gctaacatgg caacagaata atgtacaaag gttgaagcaa acgctaaatg
     4081 aacttatgcg ccaacaaaat catccagaaa aacctggaag caaggaaaga gtcagtagtg
     4141 catcacaccc tccttctccc agtttatttt gtcctttcag ctttccagca cagcctgtaa
     4201 atctgttcaa cctaccgggg tttactaatt tttcatcatt tgcaccaggt atgaatttca
     4261 gccctttatt tccttctaat tttggagatt tttctcaaaa tatttctaca cccactgaac
     4321 agcagcaacc attagcccag aatctttcag ggaaaacaga atacatggct tttccaaaac
     4381 cttttgaaag tagttcttct gttggagcag aaaaacaaag gaatcaaaaa cagcccgaag
     4441 aggaggtgga gaacagtagg acaccatggt tatatgacca agaaggtgaa gtagaaaaac
     4501 catttctcaa gactggatgt gcagtgtctg taaagaaaac aacaaatagt aatcgcaaaa
     4561 atcaattaga taccagtagg agaagacgcc aatttgatga agagtcgtta gaaagcttta
     4621 gcagtatgcc tgacccagta gatccaacaa cagtaactaa aacattcaag tcaagaaaag
     4681 catctgcaca ggccagcctg gcatctaaag ataaaactcc caaatcaaag agtaagaaga
     4741 ggcattctac tcagctgaaa agcagagtta aaaatattgg gtatgaaagt gccagtatgt
     4801 ctagcacatg tgaaccttgc aaaagtagga acagacattc agcccagact gaagagcctg
     4861 ttcaagcaaa agtattcagc agaaagaatc atgagcagct ggaaaaagta ctaagatata
     4921 gtaggtctac agaaatgtct tcagaaaccg ggagtgattt ttccatgttt gaagctttgc
     4981 gggataccat ttattctgaa gtagctacgt tgatttctca aaatgaatct cgtccacatt
     5041 ttcttattga actcttccat gaacttcagc tactgaatac agactatttg agacagaggg
     5101 ctttatatgc cttgcaggac atagtatcca gacatatttc tgagaaccat gaaaaagaag
     5161 gggaaaacgt aaagtcagtg aattctggta cttggatagc atcaaactca gaacttactc
     5221 ccagtgaaag ccttgctact actgatgatg aaacttttga gaagaacttt gagagagaaa
     5281 cacataaaat aagtgagcaa aatgatgctg ataatgctag tgtcacgtct gtatcttcaa
     5341 attttgagcc ttttgcaaca gatgatctgg gtaacactgt gattcactta gatcaagcat
     5401 tagccagaat gagagaatat gagcgtatga agactgagac tgaaagtaac acaaatgtca
     5461 gatgcacctg caggattata gaggatgagg atggtgctgc tgccccgact acggttgata
     5521 gtttagaagt ggaaactcct attattgaaa atcatagttc acagcaatct gtaagtgaag
     5581 tttctaccgt cccatgtcct agaattgata cacagcaact ggaccggcaa attaaagcaa
     5641 ttatgaaaga agtcattccc tttttgaagg agcacatgga tgaagtatgc tcttctcaac
     5701 ttctaacctc agtaagacgc atggttttga ctcttaccca gcaaaacgat gagagcaaag
     5761 agtttgtaaa gttctttcat aaacaacttg gaagtatatt acaggattca ctggcaaaat
     5821 ttgctggcag aaaactgaaa gattgtggag aagatcttct tgtagagata tctgaagtgt
     5881 tatttaatga attggctttc tttaaactca tgcaagattt ggataataat agtataactg
     5941 ttaaacagag atgcaaaagg aaaattgaag cagctggagt gatacagtct tacgcaaaag
     6001 aggccaaaag gattcttgaa ggagatcatg gctcacctgc tggagaaatt gatgatgaag
     6061 acaaagataa ggatgagact gaaacagtta aacagagtca aacatctgag gtttatgatg
     6121 gtgacggtcc caaaaatgtg agctctgatg tctctgatca agaggaagat gaagaaagtg
     6181 aagaatgtcc agtgtctatt aatttgtcca aagctgaaac tcaggctttg actaattatg
     6241 gaagtggaga agatgagaat gaagatgaag aaatagaaga atttgaagag ggacctgtag
     6301 atgtccagac ttcactgcag gctaacactg aaactacaga agaaaatgaa catgacgatc
     6361 aggttccaca gcatgatttt gaaaaatcag cggaaagcaa aaatgtccca tcagaacaag
     6421 aacccactac tagtaaagat gaccaagata gcactcctgt gaagccctgt tacctcaata
     6481 tcttggaaaa tgagcaacct ttaaacagca ctgtccaaaa ggacgctctt actaccatcg
     6541 attcatctaa tcagcctaac gctttgcctt tacctttaac tgaaattgaa accttggtgc
     6601 ctagagtcaa agaagttaaa tccgcccagg aaactcctga aagctctttg gctggaagtc
     6661 ctgatactga atctccagtg ttagtgaatg actatgaagc agaatctggt aacataagtc
     6721 aaaaatctga tgaagaagac tttgtgaaag ttgaagattt accacttaaa ctgacaatat
     6781 attcagaggc agatctaagg aagaaaatgg tagaagaaga acagaaaaac catttatctg
     6841 gtgaaatatt acgtgaaatg cagactgaag aactagctgg gaattctcag acactaaaag
     6901 aacctgaaac agtgggagcc caaagtacat gagatgtctt cagaggctca tctaactctc
     6961 tttacatagt caatgcatat atggaaatgg cactaaataa acatctgttt tgatctgtaa
     7021 aaaatgtaaa ttagtttgac actgcatttt tggtaggtgt gctaatttct gcccatggca
     7081 gtttaaaaca tcaaaaactg aattctggac agattcaagc cttgatacac tgtggggttt
     7141 ttttcttttt ctttctgtca ttttttttgg tcttgatttt ttttccccat tgtgatgttt
     7201 ggtaacgtta aatttaaaat gtagttttaa ataaagtttg gacttaacct gtaaactatc
     7261 ttttttggaa attatgttga attctataca gcaagtcact gttctgtata attaggctat
     7321 tcaaagagca atggtcaaga gttagagaaa tatactattt attgtaaagc ccagccttta
     7381 ggccaggctt ccaaataatg ccagtgttgc tgctattggg tctcatgttc ttttagatac
     7441 ttgcatgtct tattcctgtg caagaatagg gcaggttata aaggtttcca ggttattgta
     7501 gaatatatat taatattcta ttcaaattgg atgataagtt tagaatactt gtccttagta
     7561 cgtagaactt acataattat ctattagata aatattttct agaatttcaa ttcatatctg
     7621 tgttgcctca gtctaaaagt aaaaaaaaaa aagttttcta taattagtat ttctgcacag
     7681 ccaagtaaag taacattgtg attaatttta aaaggaaaac caagatcttt aaagtagaga
     7741 ttaatagaac taaatttatg taccagcaca ttaaagttct atatgccttc ggacaacctt
     7801 gccttttgag atgatagttt agccaaagca tagcagttgc ttctgtatgc agtgagagag
     7861 aagcaggttc gcagaggaag ttttgagtaa cgaaaatcta catgacctct ttgtcatgaa
     7921 gtaaatcagc ttctaaaggt ggtgtagctt tagatcccaa acttgccaca tacccagtaa
     7981 ggcttcacat agccagttaa caattaagtc atctttacag attccttctt gaataaaata
     8041 tgaagaattg ttccaaatag tcttttaagt ttgtcaacaa ttaactgaag tatcccataa
     8101 gaagagaatt tggttggtat tcctttgaaa ttcttgcctg atacctcagt gtaaaagtcc
     8161 agtcagggag tattaaatga ggatttccct atgagggcat tgactgtatt gctccataac
     8221 ttaaattatg ggagacatat atctccaact ttctgaatta gtaaaactta ttcagaaaac
     8281 tgtcatccca gaaacaggaa ttcttattca attggcttga cttcagggaa actgaaacat
     8341 aagttacatt atatgtatac ttaagttctg tatttgtttt ctagactctg tacagaaact
     8401 tcattttgat actcaagcca agccttacat attaagactg tctgtctctc tctctgcatg
     8461 cattttaaag atcgatacag tggaagcgtt gtacttatac cttagttatt actgtagtat
     8521 ctgtgaaccg tatcaaactt gcttatttga cttatgttat agctgttgta atatggtctg
     8581 tttttttcta ttatagtaga taatttagtt ttaaaatacc taggacttga gagcagataa
     8641 cttgtttaat atgtttttcc ctggtaactg ttgctaaagg gttaggcatt gaatattact
     8701 gtttgtcttc atttttaagt taaaaatttg gttagagata aaagaggaag aaaaggtcaa
     8761 aatgagtgag agagaaacct cgcaggttga aataatgcct aaaagagtga gctcgccaga
     8821 ctgtgcagca ggcactcttt gtattttgta acattcactt tgggtaaatg ctttttcact
     8881 gttaataaat gtatatcctg cataca
//
LOCUS       XM_032618242            7539 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X8, mRNA.
ACCESSION   XM_032618242
VERSION     XM_032618242.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7539
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7539
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6917
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X8"
                     /protein_id="XP_032474133.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSITSELNEELNDLIQR
                     FHNQLRDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEK
                     KQKMDKLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGES
                     NSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDM
                     MTDAVNENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRD
                     GRSVNSNCEINNRSAANIRALNMPPSLADCRYNREQEQGIHVAQGEGEEEEEEEAEDE
                     AVSGASLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGV
                     ISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQREL
                     KQLQEERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEAS
                     TSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSP
                     VAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEE
                     EEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNIS
                     MQRQENLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLL
                     TGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPG
                     SKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDF
                     SQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTP
                     WLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPV
                     DPTTVTKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKNIGYESASMSSTCE
                     PCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSAHARRILQQSNRNAC
                     NEAPETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRAL
                     YALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERE
                     THKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNT
                     NVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDR
                     QIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSIL
                     QDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAA
                     GVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSD
                     VSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQA
                     NTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQ
                     PLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTE
                     SPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGE
                     ILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4920..6818
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgttgt aacagaaact acaggtagcc tatctggagt cagtatcaca tctgaactaa
     1741 atgaagaatt gaatgattta attcagcgtt ttcataatca gcttcgtgat tctcagcctc
     1801 cacctgttcc agacaataga agacaagcag aaagtctttc attaactagg gaggtttctc
     1861 agagcagaaa tccatcagtt tcagagcatt tacctgatga gaaagtccag ctttttagca
     1921 aaatgagagt gttacaagaa aagaaacaaa aaatggacaa gctgcttgga gaacttcata
     1981 cacttcgaga tgagcatttg aacaattcat cctttgtgcc ttcttcagcc tccccacaaa
     2041 ggagtgtgga tcagagaagt acaaccgcag ctccctctgc tcctgtaggc ttaacaccag
     2101 ttgtcaatgg agaatccaat agcctcacat catctgttcc ttatcctgct gcttctctag
     2161 tttctcagaa tcagagtgaa aatgaaggcc acctaaatcc aactgaaaaa ctccagaagt
     2221 taaatgaagt tcgaaagagg ttgaatgagc taagagagtt agttcattat tacgagcaaa
     2281 catcagatat gatgacagat gctgtaaatg aaaacacaaa agaagaagaa actgaagagt
     2341 cagaatatga ttccgagcat gaaaattctg aacctgttac taacattcga aatccacaag
     2401 tagctgccac ctggaatgaa gtaaatagta attctaaggc acagtgtgtt tctaataata
     2461 gagatgggag atcagttaat tctaattgtg aaattaacaa cagatctgct gccaacataa
     2521 gggctctaaa catgcctcct tctttagcag attgtcgata caatagagaa caagaacagg
     2581 ggattcacgt tgcacaaggt gaaggtgagg aggaggaaga ggaagaagca gaagatgagg
     2641 cagtcagtgg agcgtcatta tctagtcatc ggagcagtct ggttgatgag acgcctgaag
     2701 atgctgaatt tgaacagaag atcagcagac ttatggctgc aaaacagaaa cttagacagt
     2761 tacaagatct tgttgcattg gtgcaggatg atgatacagc agatcaagga gttatctctg
     2821 ccaatacctc aaatttggat gatttctacc cagcagaaga agacaccaaa caaaatgcaa
     2881 ataacactag aggaaatacc aataaaacac agaaagatgc tggagtaaat gaaaaggcaa
     2941 gagagaaatt ttatgaggct aaactacagc agcaacagag agagctcaaa caattgcagg
     3001 aagaaagaaa gaaactgatt gagattcaag agaaaattca agcattgcaa aaggcatgtc
     3061 ctgacctaca gctgtcagcc actagtgcag gtaattgtcc cacaaaaaaa tatatgccag
     3121 ctgttacttc aaccccaact gttaatgaaa atgaagccag tacaagcaga tctgcttttg
     3181 aacctgatga tccttcagtg gtagataatg agttgtggtc agaaatgcga agacacgaaa
     3241 tgttaaggga agagctgcga cagagaagaa agcagcttga agctttgatg gctgaacatc
     3301 agaggaggca aggtctggct gaaactacat ctccagtggc tgtttcactg agaagtgatg
     3361 ggtctgagaa cctgtgtacg cctcaacaga gtagaacaga aaaaacaatg gcaacttggg
     3421 gaggttctat ccagtgtgca ctagatggag aaggagatga agatggttac ctttctgaag
     3481 cagttgttcg gacagatgaa gacgaggagg aggaggagca agacgccggc tcccatgata
     3541 gcttttccgt gtgtcctcct agcagcgcaa atcataactc ctataatgta aaggaaacta
     3601 aaaataggtg gaagaacaat cgcccttttt cagcagatgg aaattatcgt cctttagcca
     3661 ggacaagaca acagaatatc agcatgcagc gtcaggaaaa ccttcgctgg gtgtcagaac
     3721 tctcttatgt agaagagaaa gaacagtggc aagaacaaat caatcagcta aagaaacaac
     3781 ttgatttcag tgtcagtatt tgtcagactt tgatgcaaga ccagcagact ctgtcttgtc
     3841 tgctacaaac tcttctcacg ggcccttaca gtgttatgcc cagcaatgtt gcatctcctc
     3901 aagtacacct tataatgcac cagttgaacc agtgctacac ccagctaaca tggcaacaga
     3961 ataatgtaca aaggttgaag caaacgctaa atgaacttat gcgccaacaa aatcatccag
     4021 aaaaacctgg aagcaaggaa agagtcagta gtgcatcaca ccctccttct cccagtttat
     4081 tttgtccttt cagctttcca gcacagcctg taaatctgtt caacctaccg gggtttacta
     4141 atttttcatc atttgcacca ggtatgaatt tcagcccttt atttccttct aattttggag
     4201 atttttctca aaatatttct acacccactg aacagcagca accattagcc cagaatcttt
     4261 cagggaaaac agaatacatg gcttttccaa aaccttttga aagtagttct tctgttggag
     4321 cagaaaaaca aaggaatcaa aaacagcccg aagaggaggt ggagaacagt aggacaccat
     4381 ggttatatga ccaagaaggt gaagtagaaa aaccatttct caagactgga tgtgcagtgt
     4441 ctgtaaagaa aacaacaaat agtaatcgca aaaatcaatt agataccagt aggagaagac
     4501 gccaatttga tgaagagtcg ttagaaagct ttagcagtat gcctgaccca gtagatccaa
     4561 caacagtaac taaaacattc aagtcaagaa aagcatctgc acaggccagc ctggcatcta
     4621 aagataaaac tcccaaatca aagagtaaga agaggcattc tactcagctg aaaagcagag
     4681 ttaaaaatat tgggtatgaa agtgccagta tgtctagcac atgtgaacct tgcaaaagta
     4741 ggaacagaca ttcagcccag actgaagagc ctgttcaagc aaaagtattc agcagaaaga
     4801 atcatgagca gctggaaaaa gtactaagat atagtaggtc tacagaaatg tcttcagcac
     4861 atgctaggag aatactacag caatctaaca gaaatgcatg caatgaagcg ccagaaaccg
     4921 ggagtgattt ttccatgttt gaagctttgc gggataccat ttattctgaa gtagctacgt
     4981 tgatttctca aaatgaatct cgtccacatt ttcttattga actcttccat gaacttcagc
     5041 tactgaatac agactatttg agacagaggg ctttatatgc cttgcaggac atagtatcca
     5101 gacatatttc tgagaaccat gaaaaagaag gggaaaacgt aaagtcagtg aattctggta
     5161 cttggatagc atcaaactca gaacttactc ccagtgaaag ccttgctact actgatgatg
     5221 aaacttttga gaagaacttt gagagagaaa cacataaaat aagtgagcaa aatgatgctg
     5281 ataatgctag tgtcacgtct gtatcttcaa attttgagcc ttttgcaaca gatgatctgg
     5341 gtaacactgt gattcactta gatcaagcat tagccagaat gagagaatat gagcgtatga
     5401 agactgagac tgaaagtaac acaaatgtca gatgcacctg caggattata gaggatgagg
     5461 atggtgctgc tgccccgact acggttgata gtttagaagt ggaaactcct attattgaaa
     5521 atcatagttc acagcaatct gtaagtgaag tttctaccgt cccatgtcct agaattgata
     5581 cacagcaact ggaccggcaa attaaagcaa ttatgaaaga agtcattccc tttttgaagg
     5641 agcacatgga tgaagtatgc tcttctcaac ttctaacctc agtaagacgc atggttttga
     5701 ctcttaccca gcaaaacgat gagagcaaag agtttgtaaa gttctttcat aaacaacttg
     5761 gaagtatatt acaggattca ctggcaaaat ttgctggcag aaaactgaaa gattgtggag
     5821 aagatcttct tgtagagata tctgaagtgt tatttaatga attggctttc tttaaactca
     5881 tgcaagattt ggataataat agtataactg ttaaacagag atgcaaaagg aaaattgaag
     5941 cagctggagt gatacagtct tacgcaaaag aggccaaaag gattcttgaa ggagatcatg
     6001 gctcacctgc tggagaaatt gatgatgaag acaaagataa ggatgagact gaaacagtta
     6061 aacagagtca aacatctgag gtttatgatg gtgacggtcc caaaaatgtg agctctgatg
     6121 tctctgatca agaggaagat gaagaaagtg aagaatgtcc agtgtctatt aatttgtcca
     6181 aagctgaaac tcaggctttg actaattatg gaagtggaga agatgagaat gaagatgaag
     6241 aaatagaaga atttgaagag ggacctgtag atgtccagac ttcactgcag gctaacactg
     6301 aaactacaga agaaaatgaa catgacgatc aggttccaca gcatgatttt gaaaaatcag
     6361 cggaaagcaa aaatgtccca tcagaacaag aacccactac tagtaaagat gaccaagata
     6421 gcactcctgt gaagccctgt tacctcaata tcttggaaaa tgagcaacct ttaaacagca
     6481 ctgtccaaaa ggacgctctt actaccatcg attcatctaa tcagcctaac gctttgcctt
     6541 tacctttaac tgaaattgaa accttggtgc ctagagtcaa agaagttaaa tccgcccagg
     6601 aaactcctga aagctctttg gctggaagtc ctgatactga atctccagtg ttagtgaatg
     6661 actatgaagc agaatctggt aacataagtc aaaaatctga tgaagaagac tttgtgaaag
     6721 ttgaagattt accacttaaa ctgacaatat attcagaggc agatctaagg aagaaaatgg
     6781 tagaagaaga acagaaaaac catttatctg gtgaaatatt acgtgaaatg cagactgaag
     6841 aactagctgg gaattctcag acactaaaag aacctgagcc aagttatagt cccagatttc
     6901 cttctttatg ggtctaatag cacaacccaa gggccactcg gaggagcaca tttcttgcat
     6961 caaggtcaaa gattttcttt ttgttcatca attcatcagc tgattaaact catataagat
     7021 tttttgtttt ttttaagaaa tagggtgaag agaagtgcaa accaaatgtc aaaccttcag
     7081 ttaattcctc actcttcagc ccatttctgc ctgttaggac tcagttggta ccctctgcac
     7141 tgccgcctgt cctagtgtgt ctaggctgca gcttcctccc ctcttctctg tgcctccatc
     7201 tcctttgagc atcctgggaa cttgttgtgg ttcgccatcc tctgttctct cacagccact
     7261 cttcttctgt tctgggttta ttcattttta tacttctttt cttttttttt tctagtgggg
     7321 ctttcttttg gagagagagg aagtatctgc ttagtctgcc gtcttaaaat ggaaaccctt
     7381 acctgtgcct tttaaactct tgctgtgtgt taccagggaa ttattgtagc aaactaagtt
     7441 tcttttgtaa taactttata ttagaaatga aagttttaat ggaagagagc agtattaaac
     7501 taaattctat aaggtcttaa cttagtaagt aatttataa
//
LOCUS       XM_032618243            7464 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X9, mRNA.
ACCESSION   XM_032618243
VERSION     XM_032618243.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7464
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7464
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6842
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X9"
                     /protein_id="XP_032474134.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLA
                     DCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKI
                     SRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGN
                     TNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQ
                     LSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEML
                     REELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATW
                     GGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVK
                     ETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQ
                     LKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYT
                     QLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVN
                     LFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFP
                     KPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNS
                     NRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPK
                     SKSKKRHSTQLKSRVKNIAHARRILQQSNRNACNEAPETGSDFSMFEALRDTIYSEVA
                     TLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSV
                     NSGTWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPF
                     ATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLE
                     VETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQL
                     LTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISE
                     VLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEI
                     DDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQ
                     ALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAES
                     KNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPL
                     PLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFV
                     KVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYS
                     PRFPSLWV"
     misc_feature    4845..6743
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagcag
     2641 attgtcgata caatagagaa caagaacagg ggattcacgt tgcacaaggt gaaggtgagg
     2701 aggaggaaga ggaagaagca gaagatgagg cagtcagtgg agcgtcatta tctagtcatc
     2761 ggagcagtct ggttgatgag acgcctgaag atgctgaatt tgaacagaag atcagcagac
     2821 ttatggctgc aaaacagaaa cttagacagt tacaagatct tgttgcattg gtgcaggatg
     2881 atgatacagc agatcaagga gttatctctg ccaatacctc aaatttggat gatttctacc
     2941 cagcagaaga agacaccaaa caaaatgcaa ataacactag aggaaatacc aataaaacac
     3001 agaaagatgc tggagtaaat gaaaaggcaa gagagaaatt ttatgaggct aaactacagc
     3061 agcaacagag agagctcaaa caattgcagg aagaaagaaa gaaactgatt gagattcaag
     3121 agaaaattca agcattgcaa aaggcatgtc ctgacctaca gctgtcagcc actagtgcag
     3181 gtaattgtcc cacaaaaaaa tatatgccag ctgttacttc aaccccaact gttaatgaaa
     3241 atgaagccag tacaagcaga tctgcttttg aacctgatga tccttcagtg gtagataatg
     3301 agttgtggtc agaaatgcga agacacgaaa tgttaaggga agagctgcga cagagaagaa
     3361 agcagcttga agctttgatg gctgaacatc agaggaggca aggtctggct gaaactacat
     3421 ctccagtggc tgtttcactg agaagtgatg ggtctgagaa cctgtgtacg cctcaacaga
     3481 gtagaacaga aaaaacaatg gcaacttggg gaggttctat ccagtgtgca ctagatggag
     3541 aaggagatga agatggttac ctttctgaag cagttgttcg gacagatgaa gacgaggagg
     3601 aggaggagca agacgccggc tcccatgata gcttttccgt gtgtcctcct agcagcgcaa
     3661 atcataactc ctataatgta aaggaaacta aaaataggtg gaagaacaat cgcccttttt
     3721 cagcagatgg aaattatcgt cctttagcca ggacaagaca acagaatatc agcatgcagc
     3781 gtcaggaaaa ccttcgctgg gtgtcagaac tctcttatgt agaagagaaa gaacagtggc
     3841 aagaacaaat caatcagcta aagaaacaac ttgatttcag tgtcagtatt tgtcagactt
     3901 tgatgcaaga ccagcagact ctgtcttgtc tgctacaaac tcttctcacg ggcccttaca
     3961 gtgttatgcc cagcaatgtt gcatctcctc aagtacacct tataatgcac cagttgaacc
     4021 agtgctacac ccagctaaca tggcaacaga ataatgtaca aaggttgaag caaacgctaa
     4081 atgaacttat gcgccaacaa aatcatccag aaaaacctgg aagcaaggaa agagtcagta
     4141 gtgcatcaca ccctccttct cccagtttat tttgtccttt cagctttcca gcacagcctg
     4201 taaatctgtt caacctaccg gggtttacta atttttcatc atttgcacca ggtatgaatt
     4261 tcagcccttt atttccttct aattttggag atttttctca aaatatttct acacccactg
     4321 aacagcagca accattagcc cagaatcttt cagggaaaac agaatacatg gcttttccaa
     4381 aaccttttga aagtagttct tctgttggag cagaaaaaca aaggaatcaa aaacagcccg
     4441 aagaggaggt ggagaacagt aggacaccat ggttatatga ccaagaaggt gaagtagaaa
     4501 aaccatttct caagactgga tgtgcagtgt ctgtaaagaa aacaacaaat agtaatcgca
     4561 aaaatcaatt agataccagt aggagaagac gccaatttga tgaagagtcg ttagaaagct
     4621 ttagcagtat gcctgaccca gtagatccaa caacagtaac taaaacattc aagtcaagaa
     4681 aagcatctgc acaggccagc ctggcatcta aagataaaac tcccaaatca aagagtaaga
     4741 agaggcattc tactcagctg aaaagcagag ttaaaaatat tgcacatgct aggagaatac
     4801 tacagcaatc taacagaaat gcatgcaatg aagcgccaga aaccgggagt gatttttcca
     4861 tgtttgaagc tttgcgggat accatttatt ctgaagtagc tacgttgatt tctcaaaatg
     4921 aatctcgtcc acattttctt attgaactct tccatgaact tcagctactg aatacagact
     4981 atttgagaca gagggcttta tatgccttgc aggacatagt atccagacat atttctgaga
     5041 accatgaaaa agaaggggaa aacgtaaagt cagtgaattc tggtacttgg atagcatcaa
     5101 actcagaact tactcccagt gaaagccttg ctactactga tgatgaaact tttgagaaga
     5161 actttgagag agaaacacat aaaataagtg agcaaaatga tgctgataat gctagtgtca
     5221 cgtctgtatc ttcaaatttt gagccttttg caacagatga tctgggtaac actgtgattc
     5281 acttagatca agcattagcc agaatgagag aatatgagcg tatgaagact gagactgaaa
     5341 gtaacacaaa tgtcagatgc acctgcagga ttatagagga tgaggatggt gctgctgccc
     5401 cgactacggt tgatagttta gaagtggaaa ctcctattat tgaaaatcat agttcacagc
     5461 aatctgtaag tgaagtttct accgtcccat gtcctagaat tgatacacag caactggacc
     5521 ggcaaattaa agcaattatg aaagaagtca ttcccttttt gaaggagcac atggatgaag
     5581 tatgctcttc tcaacttcta acctcagtaa gacgcatggt tttgactctt acccagcaaa
     5641 acgatgagag caaagagttt gtaaagttct ttcataaaca acttggaagt atattacagg
     5701 attcactggc aaaatttgct ggcagaaaac tgaaagattg tggagaagat cttcttgtag
     5761 agatatctga agtgttattt aatgaattgg ctttctttaa actcatgcaa gatttggata
     5821 ataatagtat aactgttaaa cagagatgca aaaggaaaat tgaagcagct ggagtgatac
     5881 agtcttacgc aaaagaggcc aaaaggattc ttgaaggaga tcatggctca cctgctggag
     5941 aaattgatga tgaagacaaa gataaggatg agactgaaac agttaaacag agtcaaacat
     6001 ctgaggttta tgatggtgac ggtcccaaaa atgtgagctc tgatgtctct gatcaagagg
     6061 aagatgaaga aagtgaagaa tgtccagtgt ctattaattt gtccaaagct gaaactcagg
     6121 ctttgactaa ttatggaagt ggagaagatg agaatgaaga tgaagaaata gaagaatttg
     6181 aagagggacc tgtagatgtc cagacttcac tgcaggctaa cactgaaact acagaagaaa
     6241 atgaacatga cgatcaggtt ccacagcatg attttgaaaa atcagcggaa agcaaaaatg
     6301 tcccatcaga acaagaaccc actactagta aagatgacca agatagcact cctgtgaagc
     6361 cctgttacct caatatcttg gaaaatgagc aacctttaaa cagcactgtc caaaaggacg
     6421 ctcttactac catcgattca tctaatcagc ctaacgcttt gcctttacct ttaactgaaa
     6481 ttgaaacctt ggtgcctaga gtcaaagaag ttaaatccgc ccaggaaact cctgaaagct
     6541 ctttggctgg aagtcctgat actgaatctc cagtgttagt gaatgactat gaagcagaat
     6601 ctggtaacat aagtcaaaaa tctgatgaag aagactttgt gaaagttgaa gatttaccac
     6661 ttaaactgac aatatattca gaggcagatc taaggaagaa aatggtagaa gaagaacaga
     6721 aaaaccattt atctggtgaa atattacgtg aaatgcagac tgaagaacta gctgggaatt
     6781 ctcagacact aaaagaacct gagccaagtt atagtcccag atttccttct ttatgggtct
     6841 aatagcacaa cccaagggcc actcggagga gcacatttct tgcatcaagg tcaaagattt
     6901 tctttttgtt catcaattca tcagctgatt aaactcatat aagatttttt gtttttttta
     6961 agaaataggg tgaagagaag tgcaaaccaa atgtcaaacc ttcagttaat tcctcactct
     7021 tcagcccatt tctgcctgtt aggactcagt tggtaccctc tgcactgccg cctgtcctag
     7081 tgtgtctagg ctgcagcttc ctcccctctt ctctgtgcct ccatctcctt tgagcatcct
     7141 gggaacttgt tgtggttcgc catcctctgt tctctcacag ccactcttct tctgttctgg
     7201 gtttattcat ttttatactt cttttctttt ttttttctag tggggctttc ttttggagag
     7261 agaggaagta tctgcttagt ctgccgtctt aaaatggaaa cccttacctg tgccttttaa
     7321 actcttgctg tgtgttacca gggaattatt gtagcaaact aagtttcttt tgtaataact
     7381 ttatattaga aatgaaagtt ttaatggaag agagcagtat taaactaaat tctataaggt
     7441 cttaacttag taagtaattt ataa
//
LOCUS       XM_032618244            7439 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X10, mRNA.
ACCESSION   XM_032618244
VERSION     XM_032618244.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7439
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7439
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6818
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X10"
                     /protein_id="XP_032474135.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVPLRVVT
                     ETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSR
                     NPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQR
                     SVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQ
                     KLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIR
                     NPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLADCRYN
                     REQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMA
                     AKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQ
                     KDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATS
                     AGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELR
                     QRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQ
                     CALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNR
                     WKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQL
                     DFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQ
                     QNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLP
                     GFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFES
                     SSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQ
                     LDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKK
                     RHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVL
                     RYSRSTEMSSAHARRILQQSNRNACNEAPETGSDFSMFEALRDTIYSEVATLISQNES
                     RPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIAS
                     NSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNT
                     VIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIEN
                     HSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMV
                     LTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAF
                     FKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKD
                     ETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSG
                     EDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQE
                     PTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETL
                     VPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLK
                     LTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV
                     "
     misc_feature    4821..6719
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa caacacgatt
     1381 tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga cgacaagctg
     1441 ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat gattctgaaa
     1501 aggttgcagg gacaactcct ggtcatcata ctgtaccgtg cagacagcca gctcgctctc
     1561 cttttcatca gagagtaccc ttaagagttg taacagaaac tacaggtagc ctatctggag
     1621 tcagtatcac atctgaacta aatgaagaat tgaatgattt aattcagcgt tttcataatc
     1681 agcttcgtga ttctcagcct ccacctgttc cagacaatag aagacaagca gaaagtcttt
     1741 cattaactag ggaggtttct cagagcagaa atccatcagt ttcagagcat ttacctgatg
     1801 agaaagtcca gctttttagc aaaatgagag tgttacaaga aaagaaacaa aaaatggaca
     1861 agctgcttgg agaacttcat acacttcgag atgagcattt gaacaattca tcctttgtgc
     1921 cttcttcagc ctccccacaa aggagtgtgg atcagagaag tacaaccgca gctccctctg
     1981 ctcctgtagg cttaacacca gttgtcaatg gagaatccaa tagcctcaca tcatctgttc
     2041 cttatcctgc tgcttctcta gtttctcaga atcagagtga aaatgaaggc cacctaaatc
     2101 caactgaaaa actccagaag ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt
     2161 tagttcatta ttacgagcaa acatcagata tgatgacaga tgctgtaaat gaaaacacaa
     2221 aagaagaaga aactgaagag tcagaatatg attccgagca tgaaaattct gaacctgtta
     2281 ctaacattcg aaatccacaa gtagctgcca cctggaatga agtaaatagt aattctaagg
     2341 cacagtgtgt ttctaataat agagatggga gatcagttaa ttctaattgt gaaattaaca
     2401 acagatctgc tgccaacata agggctctaa acatgcctcc ttctttagca gattgtcgat
     2461 acaatagaga acaagaacag gggattcacg ttgcacaagg tgaaggtgag gaggaggaag
     2521 aggaagaagc agaagatgag gcagtcagtg gagcgtcatt atctagtcat cggagcagtc
     2581 tggttgatga gacgcctgaa gatgctgaat ttgaacagaa gatcagcaga cttatggctg
     2641 caaaacagaa acttagacag ttacaagatc ttgttgcatt ggtgcaggat gatgatacag
     2701 cagatcaagg agttatctct gccaatacct caaatttgga tgatttctac ccagcagaag
     2761 aagacaccaa acaaaatgca aataacacta gaggaaatac caataaaaca cagaaagatg
     2821 ctggagtaaa tgaaaaggca agagagaaat tttatgaggc taaactacag cagcaacaga
     2881 gagagctcaa acaattgcag gaagaaagaa agaaactgat tgagattcaa gagaaaattc
     2941 aagcattgca aaaggcatgt cctgacctac agctgtcagc cactagtgca ggtaattgtc
     3001 ccacaaaaaa atatatgcca gctgttactt caaccccaac tgttaatgaa aatgaagcca
     3061 gtacaagcag atctgctttt gaacctgatg atccttcagt ggtagataat gagttgtggt
     3121 cagaaatgcg aagacacgaa atgttaaggg aagagctgcg acagagaaga aagcagcttg
     3181 aagctttgat ggctgaacat cagaggaggc aaggtctggc tgaaactaca tctccagtgg
     3241 ctgtttcact gagaagtgat gggtctgaga acctgtgtac gcctcaacag agtagaacag
     3301 aaaaaacaat ggcaacttgg ggaggttcta tccagtgtgc actagatgga gaaggagatg
     3361 aagatggtta cctttctgaa gcagttgttc ggacagatga agacgaggag gaggaggagc
     3421 aagacgccgg ctcccatgat agcttttccg tgtgtcctcc tagcagcgca aatcataact
     3481 cctataatgt aaaggaaact aaaaataggt ggaagaacaa tcgccctttt tcagcagatg
     3541 gaaattatcg tcctttagcc aggacaagac aacagaatat cagcatgcag cgtcaggaaa
     3601 accttcgctg ggtgtcagaa ctctcttatg tagaagagaa agaacagtgg caagaacaaa
     3661 tcaatcagct aaagaaacaa cttgatttca gtgtcagtat ttgtcagact ttgatgcaag
     3721 accagcagac tctgtcttgt ctgctacaaa ctcttctcac gggcccttac agtgttatgc
     3781 ccagcaatgt tgcatctcct caagtacacc ttataatgca ccagttgaac cagtgctaca
     3841 cccagctaac atggcaacag aataatgtac aaaggttgaa gcaaacgcta aatgaactta
     3901 tgcgccaaca aaatcatcca gaaaaacctg gaagcaagga aagagtcagt agtgcatcac
     3961 accctccttc tcccagttta ttttgtcctt tcagctttcc agcacagcct gtaaatctgt
     4021 tcaacctacc ggggtttact aatttttcat catttgcacc aggtatgaat ttcagccctt
     4081 tatttccttc taattttgga gatttttctc aaaatatttc tacacccact gaacagcagc
     4141 aaccattagc ccagaatctt tcagggaaaa cagaatacat ggcttttcca aaaccttttg
     4201 aaagtagttc ttctgttgga gcagaaaaac aaaggaatca aaaacagccc gaagaggagg
     4261 tggagaacag taggacacca tggttatatg accaagaagg tgaagtagaa aaaccatttc
     4321 tcaagactgg atgtgcagtg tctgtaaaga aaacaacaaa tagtaatcgc aaaaatcaat
     4381 tagataccag taggagaaga cgccaatttg atgaagagtc gttagaaagc tttagcagta
     4441 tgcctgaccc agtagatcca acaacagtaa ctaaaacatt caagtcaaga aaagcatctg
     4501 cacaggccag cctggcatct aaagataaaa ctcccaaatc aaagagtaag aagaggcatt
     4561 ctactcagct gaaaagcaga gttaaaaata ttgggtatga aagtgccagt atgtctagca
     4621 catgtgaacc ttgcaaaagt aggaacagac attcagccca gactgaagag cctgttcaag
     4681 caaaagtatt cagcagaaag aatcatgagc agctggaaaa agtactaaga tatagtaggt
     4741 ctacagaaat gtcttcagca catgctagga gaatactaca gcaatctaac agaaatgcat
     4801 gcaatgaagc gccagaaacc gggagtgatt tttccatgtt tgaagctttg cgggatacca
     4861 tttattctga agtagctacg ttgatttctc aaaatgaatc tcgtccacat tttcttattg
     4921 aactcttcca tgaacttcag ctactgaata cagactattt gagacagagg gctttatatg
     4981 ccttgcagga catagtatcc agacatattt ctgagaacca tgaaaaagaa ggggaaaacg
     5041 taaagtcagt gaattctggt acttggatag catcaaactc agaacttact cccagtgaaa
     5101 gccttgctac tactgatgat gaaacttttg agaagaactt tgagagagaa acacataaaa
     5161 taagtgagca aaatgatgct gataatgcta gtgtcacgtc tgtatcttca aattttgagc
     5221 cttttgcaac agatgatctg ggtaacactg tgattcactt agatcaagca ttagccagaa
     5281 tgagagaata tgagcgtatg aagactgaga ctgaaagtaa cacaaatgtc agatgcacct
     5341 gcaggattat agaggatgag gatggtgctg ctgccccgac tacggttgat agtttagaag
     5401 tggaaactcc tattattgaa aatcatagtt cacagcaatc tgtaagtgaa gtttctaccg
     5461 tcccatgtcc tagaattgat acacagcaac tggaccggca aattaaagca attatgaaag
     5521 aagtcattcc ctttttgaag gagcacatgg atgaagtatg ctcttctcaa cttctaacct
     5581 cagtaagacg catggttttg actcttaccc agcaaaacga tgagagcaaa gagtttgtaa
     5641 agttctttca taaacaactt ggaagtatat tacaggattc actggcaaaa tttgctggca
     5701 gaaaactgaa agattgtgga gaagatcttc ttgtagagat atctgaagtg ttatttaatg
     5761 aattggcttt ctttaaactc atgcaagatt tggataataa tagtataact gttaaacaga
     5821 gatgcaaaag gaaaattgaa gcagctggag tgatacagtc ttacgcaaaa gaggccaaaa
     5881 ggattcttga aggagatcat ggctcacctg ctggagaaat tgatgatgaa gacaaagata
     5941 aggatgagac tgaaacagtt aaacagagtc aaacatctga ggtttatgat ggtgacggtc
     6001 ccaaaaatgt gagctctgat gtctctgatc aagaggaaga tgaagaaagt gaagaatgtc
     6061 cagtgtctat taatttgtcc aaagctgaaa ctcaggcttt gactaattat ggaagtggag
     6121 aagatgagaa tgaagatgaa gaaatagaag aatttgaaga gggacctgta gatgtccaga
     6181 cttcactgca ggctaacact gaaactacag aagaaaatga acatgacgat caggttccac
     6241 agcatgattt tgaaaaatca gcggaaagca aaaatgtccc atcagaacaa gaacccacta
     6301 ctagtaaaga tgaccaagat agcactcctg tgaagccctg ttacctcaat atcttggaaa
     6361 atgagcaacc tttaaacagc actgtccaaa aggacgctct tactaccatc gattcatcta
     6421 atcagcctaa cgctttgcct ttacctttaa ctgaaattga aaccttggtg cctagagtca
     6481 aagaagttaa atccgcccag gaaactcctg aaagctcttt ggctggaagt cctgatactg
     6541 aatctccagt gttagtgaat gactatgaag cagaatctgg taacataagt caaaaatctg
     6601 atgaagaaga ctttgtgaaa gttgaagatt taccacttaa actgacaata tattcagagg
     6661 cagatctaag gaagaaaatg gtagaagaag aacagaaaaa ccatttatct ggtgaaatat
     6721 tacgtgaaat gcagactgaa gaactagctg ggaattctca gacactaaaa gaacctgagc
     6781 caagttatag tcccagattt ccttctttat gggtctaata gcacaaccca agggccactc
     6841 ggaggagcac atttcttgca tcaaggtcaa agattttctt tttgttcatc aattcatcag
     6901 ctgattaaac tcatataaga ttttttgttt tttttaagaa atagggtgaa gagaagtgca
     6961 aaccaaatgt caaaccttca gttaattcct cactcttcag cccatttctg cctgttagga
     7021 ctcagttggt accctctgca ctgccgcctg tcctagtgtg tctaggctgc agcttcctcc
     7081 cctcttctct gtgcctccat ctcctttgag catcctggga acttgttgtg gttcgccatc
     7141 ctctgttctc tcacagccac tcttcttctg ttctgggttt attcattttt atacttcttt
     7201 tctttttttt ttctagtggg gctttctttt ggagagagag gaagtatctg cttagtctgc
     7261 cgtcttaaaa tggaaaccct tacctgtgcc ttttaaactc ttgctgtgtg ttaccaggga
     7321 attattgtag caaactaagt ttcttttgta ataactttat attagaaatg aaagttttaa
     7381 tggaagagag cagtattaaa ctaaattcta taaggtctta acttagtaag taatttata
//
LOCUS       XM_032618245            7436 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X11, mRNA.
ACCESSION   XM_032618245
VERSION     XM_032618245.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7436
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7436
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6815
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X11"
                     /protein_id="XP_032474136.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVPLRVVT
                     ETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSR
                     NPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQR
                     SVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQ
                     KLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIR
                     NPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLDCRYNR
                     EQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMAA
                     KQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQK
                     DAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATSA
                     GNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQ
                     RRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQC
                     ALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRW
                     KNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQLD
                     FSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQ
                     NNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPG
                     FTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESS
                     SSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQL
                     DTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKKR
                     HSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVLR
                     YSRSTEMSSAHARRILQQSNRNACNEAPETGSDFSMFEALRDTIYSEVATLISQNESR
                     PHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASN
                     SELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTV
                     IHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENH
                     SSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVL
                     TLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFF
                     KLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDE
                     TETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGE
                     DENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEP
                     TTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLV
                     PRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKL
                     TIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4818..6716
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa caacacgatt
     1381 tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga cgacaagctg
     1441 ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat gattctgaaa
     1501 aggttgcagg gacaactcct ggtcatcata ctgtaccgtg cagacagcca gctcgctctc
     1561 cttttcatca gagagtaccc ttaagagttg taacagaaac tacaggtagc ctatctggag
     1621 tcagtatcac atctgaacta aatgaagaat tgaatgattt aattcagcgt tttcataatc
     1681 agcttcgtga ttctcagcct ccacctgttc cagacaatag aagacaagca gaaagtcttt
     1741 cattaactag ggaggtttct cagagcagaa atccatcagt ttcagagcat ttacctgatg
     1801 agaaagtcca gctttttagc aaaatgagag tgttacaaga aaagaaacaa aaaatggaca
     1861 agctgcttgg agaacttcat acacttcgag atgagcattt gaacaattca tcctttgtgc
     1921 cttcttcagc ctccccacaa aggagtgtgg atcagagaag tacaaccgca gctccctctg
     1981 ctcctgtagg cttaacacca gttgtcaatg gagaatccaa tagcctcaca tcatctgttc
     2041 cttatcctgc tgcttctcta gtttctcaga atcagagtga aaatgaaggc cacctaaatc
     2101 caactgaaaa actccagaag ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt
     2161 tagttcatta ttacgagcaa acatcagata tgatgacaga tgctgtaaat gaaaacacaa
     2221 aagaagaaga aactgaagag tcagaatatg attccgagca tgaaaattct gaacctgtta
     2281 ctaacattcg aaatccacaa gtagctgcca cctggaatga agtaaatagt aattctaagg
     2341 cacagtgtgt ttctaataat agagatggga gatcagttaa ttctaattgt gaaattaaca
     2401 acagatctgc tgccaacata agggctctaa acatgcctcc ttctttagat tgtcgataca
     2461 atagagaaca agaacagggg attcacgttg cacaaggtga aggtgaggag gaggaagagg
     2521 aagaagcaga agatgaggca gtcagtggag cgtcattatc tagtcatcgg agcagtctgg
     2581 ttgatgagac gcctgaagat gctgaatttg aacagaagat cagcagactt atggctgcaa
     2641 aacagaaact tagacagtta caagatcttg ttgcattggt gcaggatgat gatacagcag
     2701 atcaaggagt tatctctgcc aatacctcaa atttggatga tttctaccca gcagaagaag
     2761 acaccaaaca aaatgcaaat aacactagag gaaataccaa taaaacacag aaagatgctg
     2821 gagtaaatga aaaggcaaga gagaaatttt atgaggctaa actacagcag caacagagag
     2881 agctcaaaca attgcaggaa gaaagaaaga aactgattga gattcaagag aaaattcaag
     2941 cattgcaaaa ggcatgtcct gacctacagc tgtcagccac tagtgcaggt aattgtccca
     3001 caaaaaaata tatgccagct gttacttcaa ccccaactgt taatgaaaat gaagccagta
     3061 caagcagatc tgcttttgaa cctgatgatc cttcagtggt agataatgag ttgtggtcag
     3121 aaatgcgaag acacgaaatg ttaagggaag agctgcgaca gagaagaaag cagcttgaag
     3181 ctttgatggc tgaacatcag aggaggcaag gtctggctga aactacatct ccagtggctg
     3241 tttcactgag aagtgatggg tctgagaacc tgtgtacgcc tcaacagagt agaacagaaa
     3301 aaacaatggc aacttgggga ggttctatcc agtgtgcact agatggagaa ggagatgaag
     3361 atggttacct ttctgaagca gttgttcgga cagatgaaga cgaggaggag gaggagcaag
     3421 acgccggctc ccatgatagc ttttccgtgt gtcctcctag cagcgcaaat cataactcct
     3481 ataatgtaaa ggaaactaaa aataggtgga agaacaatcg ccctttttca gcagatggaa
     3541 attatcgtcc tttagccagg acaagacaac agaatatcag catgcagcgt caggaaaacc
     3601 ttcgctgggt gtcagaactc tcttatgtag aagagaaaga acagtggcaa gaacaaatca
     3661 atcagctaaa gaaacaactt gatttcagtg tcagtatttg tcagactttg atgcaagacc
     3721 agcagactct gtcttgtctg ctacaaactc ttctcacggg cccttacagt gttatgccca
     3781 gcaatgttgc atctcctcaa gtacacctta taatgcacca gttgaaccag tgctacaccc
     3841 agctaacatg gcaacagaat aatgtacaaa ggttgaagca aacgctaaat gaacttatgc
     3901 gccaacaaaa tcatccagaa aaacctggaa gcaaggaaag agtcagtagt gcatcacacc
     3961 ctccttctcc cagtttattt tgtcctttca gctttccagc acagcctgta aatctgttca
     4021 acctaccggg gtttactaat ttttcatcat ttgcaccagg tatgaatttc agccctttat
     4081 ttccttctaa ttttggagat ttttctcaaa atatttctac acccactgaa cagcagcaac
     4141 cattagccca gaatctttca gggaaaacag aatacatggc ttttccaaaa ccttttgaaa
     4201 gtagttcttc tgttggagca gaaaaacaaa ggaatcaaaa acagcccgaa gaggaggtgg
     4261 agaacagtag gacaccatgg ttatatgacc aagaaggtga agtagaaaaa ccatttctca
     4321 agactggatg tgcagtgtct gtaaagaaaa caacaaatag taatcgcaaa aatcaattag
     4381 ataccagtag gagaagacgc caatttgatg aagagtcgtt agaaagcttt agcagtatgc
     4441 ctgacccagt agatccaaca acagtaacta aaacattcaa gtcaagaaaa gcatctgcac
     4501 aggccagcct ggcatctaaa gataaaactc ccaaatcaaa gagtaagaag aggcattcta
     4561 ctcagctgaa aagcagagtt aaaaatattg ggtatgaaag tgccagtatg tctagcacat
     4621 gtgaaccttg caaaagtagg aacagacatt cagcccagac tgaagagcct gttcaagcaa
     4681 aagtattcag cagaaagaat catgagcagc tggaaaaagt actaagatat agtaggtcta
     4741 cagaaatgtc ttcagcacat gctaggagaa tactacagca atctaacaga aatgcatgca
     4801 atgaagcgcc agaaaccggg agtgattttt ccatgtttga agctttgcgg gataccattt
     4861 attctgaagt agctacgttg atttctcaaa atgaatctcg tccacatttt cttattgaac
     4921 tcttccatga acttcagcta ctgaatacag actatttgag acagagggct ttatatgcct
     4981 tgcaggacat agtatccaga catatttctg agaaccatga aaaagaaggg gaaaacgtaa
     5041 agtcagtgaa ttctggtact tggatagcat caaactcaga acttactccc agtgaaagcc
     5101 ttgctactac tgatgatgaa acttttgaga agaactttga gagagaaaca cataaaataa
     5161 gtgagcaaaa tgatgctgat aatgctagtg tcacgtctgt atcttcaaat tttgagcctt
     5221 ttgcaacaga tgatctgggt aacactgtga ttcacttaga tcaagcatta gccagaatga
     5281 gagaatatga gcgtatgaag actgagactg aaagtaacac aaatgtcaga tgcacctgca
     5341 ggattataga ggatgaggat ggtgctgctg ccccgactac ggttgatagt ttagaagtgg
     5401 aaactcctat tattgaaaat catagttcac agcaatctgt aagtgaagtt tctaccgtcc
     5461 catgtcctag aattgataca cagcaactgg accggcaaat taaagcaatt atgaaagaag
     5521 tcattccctt tttgaaggag cacatggatg aagtatgctc ttctcaactt ctaacctcag
     5581 taagacgcat ggttttgact cttacccagc aaaacgatga gagcaaagag tttgtaaagt
     5641 tctttcataa acaacttgga agtatattac aggattcact ggcaaaattt gctggcagaa
     5701 aactgaaaga ttgtggagaa gatcttcttg tagagatatc tgaagtgtta tttaatgaat
     5761 tggctttctt taaactcatg caagatttgg ataataatag tataactgtt aaacagagat
     5821 gcaaaaggaa aattgaagca gctggagtga tacagtctta cgcaaaagag gccaaaagga
     5881 ttcttgaagg agatcatggc tcacctgctg gagaaattga tgatgaagac aaagataagg
     5941 atgagactga aacagttaaa cagagtcaaa catctgaggt ttatgatggt gacggtccca
     6001 aaaatgtgag ctctgatgtc tctgatcaag aggaagatga agaaagtgaa gaatgtccag
     6061 tgtctattaa tttgtccaaa gctgaaactc aggctttgac taattatgga agtggagaag
     6121 atgagaatga agatgaagaa atagaagaat ttgaagaggg acctgtagat gtccagactt
     6181 cactgcaggc taacactgaa actacagaag aaaatgaaca tgacgatcag gttccacagc
     6241 atgattttga aaaatcagcg gaaagcaaaa atgtcccatc agaacaagaa cccactacta
     6301 gtaaagatga ccaagatagc actcctgtga agccctgtta cctcaatatc ttggaaaatg
     6361 agcaaccttt aaacagcact gtccaaaagg acgctcttac taccatcgat tcatctaatc
     6421 agcctaacgc tttgccttta cctttaactg aaattgaaac cttggtgcct agagtcaaag
     6481 aagttaaatc cgcccaggaa actcctgaaa gctctttggc tggaagtcct gatactgaat
     6541 ctccagtgtt agtgaatgac tatgaagcag aatctggtaa cataagtcaa aaatctgatg
     6601 aagaagactt tgtgaaagtt gaagatttac cacttaaact gacaatatat tcagaggcag
     6661 atctaaggaa gaaaatggta gaagaagaac agaaaaacca tttatctggt gaaatattac
     6721 gtgaaatgca gactgaagaa ctagctggga attctcagac actaaaagaa cctgagccaa
     6781 gttatagtcc cagatttcct tctttatggg tctaatagca caacccaagg gccactcgga
     6841 ggagcacatt tcttgcatca aggtcaaaga ttttcttttt gttcatcaat tcatcagctg
     6901 attaaactca tataagattt tttgtttttt ttaagaaata gggtgaagag aagtgcaaac
     6961 caaatgtcaa accttcagtt aattcctcac tcttcagccc atttctgcct gttaggactc
     7021 agttggtacc ctctgcactg ccgcctgtcc tagtgtgtct aggctgcagc ttcctcccct
     7081 cttctctgtg cctccatctc ctttgagcat cctgggaact tgttgtggtt cgccatcctc
     7141 tgttctctca cagccactct tcttctgttc tgggtttatt catttttata cttcttttct
     7201 tttttttttc tagtggggct ttcttttgga gagagaggaa gtatctgctt agtctgccgt
     7261 cttaaaatgg aaacccttac ctgtgccttt taaactcttg ctgtgtgtta ccagggaatt
     7321 attgtagcaa actaagtttc ttttgtaata actttatatt agaaatgaaa gttttaatgg
     7381 aagagagcag tattaaacta aattctataa ggtcttaact tagtaagtaa tttata
//
LOCUS       XM_032618246            7407 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X12, mRNA.
ACCESSION   XM_032618246
VERSION     XM_032618246.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7407
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7407
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6785
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X12"
                     /protein_id="XP_032474137.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLA
                     DCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKI
                     SRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGN
                     TNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQ
                     LSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEML
                     REELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATW
                     GGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVK
                     ETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQ
                     LKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYT
                     QLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVN
                     LFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFP
                     KPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNS
                     NRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPK
                     SKSKKRHSTQLKSRVKNIETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHE
                     LQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLA
                     TTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARM
                     REYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVS
                     TVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESK
                     EFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNS
                     ITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTS
                     EVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEE
                     FEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDST
                     PVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQ
                     ETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRK
                     KMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4788..6686
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagcag
     2641 attgtcgata caatagagaa caagaacagg ggattcacgt tgcacaaggt gaaggtgagg
     2701 aggaggaaga ggaagaagca gaagatgagg cagtcagtgg agcgtcatta tctagtcatc
     2761 ggagcagtct ggttgatgag acgcctgaag atgctgaatt tgaacagaag atcagcagac
     2821 ttatggctgc aaaacagaaa cttagacagt tacaagatct tgttgcattg gtgcaggatg
     2881 atgatacagc agatcaagga gttatctctg ccaatacctc aaatttggat gatttctacc
     2941 cagcagaaga agacaccaaa caaaatgcaa ataacactag aggaaatacc aataaaacac
     3001 agaaagatgc tggagtaaat gaaaaggcaa gagagaaatt ttatgaggct aaactacagc
     3061 agcaacagag agagctcaaa caattgcagg aagaaagaaa gaaactgatt gagattcaag
     3121 agaaaattca agcattgcaa aaggcatgtc ctgacctaca gctgtcagcc actagtgcag
     3181 gtaattgtcc cacaaaaaaa tatatgccag ctgttacttc aaccccaact gttaatgaaa
     3241 atgaagccag tacaagcaga tctgcttttg aacctgatga tccttcagtg gtagataatg
     3301 agttgtggtc agaaatgcga agacacgaaa tgttaaggga agagctgcga cagagaagaa
     3361 agcagcttga agctttgatg gctgaacatc agaggaggca aggtctggct gaaactacat
     3421 ctccagtggc tgtttcactg agaagtgatg ggtctgagaa cctgtgtacg cctcaacaga
     3481 gtagaacaga aaaaacaatg gcaacttggg gaggttctat ccagtgtgca ctagatggag
     3541 aaggagatga agatggttac ctttctgaag cagttgttcg gacagatgaa gacgaggagg
     3601 aggaggagca agacgccggc tcccatgata gcttttccgt gtgtcctcct agcagcgcaa
     3661 atcataactc ctataatgta aaggaaacta aaaataggtg gaagaacaat cgcccttttt
     3721 cagcagatgg aaattatcgt cctttagcca ggacaagaca acagaatatc agcatgcagc
     3781 gtcaggaaaa ccttcgctgg gtgtcagaac tctcttatgt agaagagaaa gaacagtggc
     3841 aagaacaaat caatcagcta aagaaacaac ttgatttcag tgtcagtatt tgtcagactt
     3901 tgatgcaaga ccagcagact ctgtcttgtc tgctacaaac tcttctcacg ggcccttaca
     3961 gtgttatgcc cagcaatgtt gcatctcctc aagtacacct tataatgcac cagttgaacc
     4021 agtgctacac ccagctaaca tggcaacaga ataatgtaca aaggttgaag caaacgctaa
     4081 atgaacttat gcgccaacaa aatcatccag aaaaacctgg aagcaaggaa agagtcagta
     4141 gtgcatcaca ccctccttct cccagtttat tttgtccttt cagctttcca gcacagcctg
     4201 taaatctgtt caacctaccg gggtttacta atttttcatc atttgcacca ggtatgaatt
     4261 tcagcccttt atttccttct aattttggag atttttctca aaatatttct acacccactg
     4321 aacagcagca accattagcc cagaatcttt cagggaaaac agaatacatg gcttttccaa
     4381 aaccttttga aagtagttct tctgttggag cagaaaaaca aaggaatcaa aaacagcccg
     4441 aagaggaggt ggagaacagt aggacaccat ggttatatga ccaagaaggt gaagtagaaa
     4501 aaccatttct caagactgga tgtgcagtgt ctgtaaagaa aacaacaaat agtaatcgca
     4561 aaaatcaatt agataccagt aggagaagac gccaatttga tgaagagtcg ttagaaagct
     4621 ttagcagtat gcctgaccca gtagatccaa caacagtaac taaaacattc aagtcaagaa
     4681 aagcatctgc acaggccagc ctggcatcta aagataaaac tcccaaatca aagagtaaga
     4741 agaggcattc tactcagctg aaaagcagag ttaaaaatat tgaaaccggg agtgattttt
     4801 ccatgtttga agctttgcgg gataccattt attctgaagt agctacgttg atttctcaaa
     4861 atgaatctcg tccacatttt cttattgaac tcttccatga acttcagcta ctgaatacag
     4921 actatttgag acagagggct ttatatgcct tgcaggacat agtatccaga catatttctg
     4981 agaaccatga aaaagaaggg gaaaacgtaa agtcagtgaa ttctggtact tggatagcat
     5041 caaactcaga acttactccc agtgaaagcc ttgctactac tgatgatgaa acttttgaga
     5101 agaactttga gagagaaaca cataaaataa gtgagcaaaa tgatgctgat aatgctagtg
     5161 tcacgtctgt atcttcaaat tttgagcctt ttgcaacaga tgatctgggt aacactgtga
     5221 ttcacttaga tcaagcatta gccagaatga gagaatatga gcgtatgaag actgagactg
     5281 aaagtaacac aaatgtcaga tgcacctgca ggattataga ggatgaggat ggtgctgctg
     5341 ccccgactac ggttgatagt ttagaagtgg aaactcctat tattgaaaat catagttcac
     5401 agcaatctgt aagtgaagtt tctaccgtcc catgtcctag aattgataca cagcaactgg
     5461 accggcaaat taaagcaatt atgaaagaag tcattccctt tttgaaggag cacatggatg
     5521 aagtatgctc ttctcaactt ctaacctcag taagacgcat ggttttgact cttacccagc
     5581 aaaacgatga gagcaaagag tttgtaaagt tctttcataa acaacttgga agtatattac
     5641 aggattcact ggcaaaattt gctggcagaa aactgaaaga ttgtggagaa gatcttcttg
     5701 tagagatatc tgaagtgtta tttaatgaat tggctttctt taaactcatg caagatttgg
     5761 ataataatag tataactgtt aaacagagat gcaaaaggaa aattgaagca gctggagtga
     5821 tacagtctta cgcaaaagag gccaaaagga ttcttgaagg agatcatggc tcacctgctg
     5881 gagaaattga tgatgaagac aaagataagg atgagactga aacagttaaa cagagtcaaa
     5941 catctgaggt ttatgatggt gacggtccca aaaatgtgag ctctgatgtc tctgatcaag
     6001 aggaagatga agaaagtgaa gaatgtccag tgtctattaa tttgtccaaa gctgaaactc
     6061 aggctttgac taattatgga agtggagaag atgagaatga agatgaagaa atagaagaat
     6121 ttgaagaggg acctgtagat gtccagactt cactgcaggc taacactgaa actacagaag
     6181 aaaatgaaca tgacgatcag gttccacagc atgattttga aaaatcagcg gaaagcaaaa
     6241 atgtcccatc agaacaagaa cccactacta gtaaagatga ccaagatagc actcctgtga
     6301 agccctgtta cctcaatatc ttggaaaatg agcaaccttt aaacagcact gtccaaaagg
     6361 acgctcttac taccatcgat tcatctaatc agcctaacgc tttgccttta cctttaactg
     6421 aaattgaaac cttggtgcct agagtcaaag aagttaaatc cgcccaggaa actcctgaaa
     6481 gctctttggc tggaagtcct gatactgaat ctccagtgtt agtgaatgac tatgaagcag
     6541 aatctggtaa cataagtcaa aaatctgatg aagaagactt tgtgaaagtt gaagatttac
     6601 cacttaaact gacaatatat tcagaggcag atctaaggaa gaaaatggta gaagaagaac
     6661 agaaaaacca tttatctggt gaaatattac gtgaaatgca gactgaagaa ctagctggga
     6721 attctcagac actaaaagaa cctgagccaa gttatagtcc cagatttcct tctttatggg
     6781 tctaatagca caacccaagg gccactcgga ggagcacatt tcttgcatca aggtcaaaga
     6841 ttttcttttt gttcatcaat tcatcagctg attaaactca tataagattt tttgtttttt
     6901 ttaagaaata gggtgaagag aagtgcaaac caaatgtcaa accttcagtt aattcctcac
     6961 tcttcagccc atttctgcct gttaggactc agttggtacc ctctgcactg ccgcctgtcc
     7021 tagtgtgtct aggctgcagc ttcctcccct cttctctgtg cctccatctc ctttgagcat
     7081 cctgggaact tgttgtggtt cgccatcctc tgttctctca cagccactct tcttctgttc
     7141 tgggtttatt catttttata cttcttttct tttttttttc tagtggggct ttcttttgga
     7201 gagagaggaa gtatctgctt agtctgccgt cttaaaatgg aaacccttac ctgtgccttt
     7261 taaactcttg ctgtgtgtta ccagggaatt attgtagcaa actaagtttc ttttgtaata
     7321 actttatatt agaaatgaaa gttttaatgg aagagagcag tattaaacta aattctataa
     7381 ggtcttaact tagtaagtaa tttataa
//
LOCUS       XM_032618247            7403 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X13, mRNA.
ACCESSION   XM_032618247
VERSION     XM_032618247.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7403
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7403
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6782
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X13"
                     /protein_id="XP_032474138.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLD
                     CRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKIS
                     RLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNT
                     NKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQL
                     SATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLR
                     EELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWG
                     GSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKE
                     TKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQL
                     KKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQ
                     LTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNL
                     FNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPK
                     PFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSN
                     RKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKS
                     KSKKRHSTQLKSRVKNIETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHEL
                     QLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLAT
                     TDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMR
                     EYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVST
                     VPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKE
                     FVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSI
                     TVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSE
                     VYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEF
                     EEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTP
                     VKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQE
                     TPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKK
                     MVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4785..6683
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagatt
     2641 gtcgatacaa tagagaacaa gaacagggga ttcacgttgc acaaggtgaa ggtgaggagg
     2701 aggaagagga agaagcagaa gatgaggcag tcagtggagc gtcattatct agtcatcgga
     2761 gcagtctggt tgatgagacg cctgaagatg ctgaatttga acagaagatc agcagactta
     2821 tggctgcaaa acagaaactt agacagttac aagatcttgt tgcattggtg caggatgatg
     2881 atacagcaga tcaaggagtt atctctgcca atacctcaaa tttggatgat ttctacccag
     2941 cagaagaaga caccaaacaa aatgcaaata acactagagg aaataccaat aaaacacaga
     3001 aagatgctgg agtaaatgaa aaggcaagag agaaatttta tgaggctaaa ctacagcagc
     3061 aacagagaga gctcaaacaa ttgcaggaag aaagaaagaa actgattgag attcaagaga
     3121 aaattcaagc attgcaaaag gcatgtcctg acctacagct gtcagccact agtgcaggta
     3181 attgtcccac aaaaaaatat atgccagctg ttacttcaac cccaactgtt aatgaaaatg
     3241 aagccagtac aagcagatct gcttttgaac ctgatgatcc ttcagtggta gataatgagt
     3301 tgtggtcaga aatgcgaaga cacgaaatgt taagggaaga gctgcgacag agaagaaagc
     3361 agcttgaagc tttgatggct gaacatcaga ggaggcaagg tctggctgaa actacatctc
     3421 cagtggctgt ttcactgaga agtgatgggt ctgagaacct gtgtacgcct caacagagta
     3481 gaacagaaaa aacaatggca acttggggag gttctatcca gtgtgcacta gatggagaag
     3541 gagatgaaga tggttacctt tctgaagcag ttgttcggac agatgaagac gaggaggagg
     3601 aggagcaaga cgccggctcc catgatagct tttccgtgtg tcctcctagc agcgcaaatc
     3661 ataactccta taatgtaaag gaaactaaaa ataggtggaa gaacaatcgc cctttttcag
     3721 cagatggaaa ttatcgtcct ttagccagga caagacaaca gaatatcagc atgcagcgtc
     3781 aggaaaacct tcgctgggtg tcagaactct cttatgtaga agagaaagaa cagtggcaag
     3841 aacaaatcaa tcagctaaag aaacaacttg atttcagtgt cagtatttgt cagactttga
     3901 tgcaagacca gcagactctg tcttgtctgc tacaaactct tctcacgggc ccttacagtg
     3961 ttatgcccag caatgttgca tctcctcaag tacaccttat aatgcaccag ttgaaccagt
     4021 gctacaccca gctaacatgg caacagaata atgtacaaag gttgaagcaa acgctaaatg
     4081 aacttatgcg ccaacaaaat catccagaaa aacctggaag caaggaaaga gtcagtagtg
     4141 catcacaccc tccttctccc agtttatttt gtcctttcag ctttccagca cagcctgtaa
     4201 atctgttcaa cctaccgggg tttactaatt tttcatcatt tgcaccaggt atgaatttca
     4261 gccctttatt tccttctaat tttggagatt tttctcaaaa tatttctaca cccactgaac
     4321 agcagcaacc attagcccag aatctttcag ggaaaacaga atacatggct tttccaaaac
     4381 cttttgaaag tagttcttct gttggagcag aaaaacaaag gaatcaaaaa cagcccgaag
     4441 aggaggtgga gaacagtagg acaccatggt tatatgacca agaaggtgaa gtagaaaaac
     4501 catttctcaa gactggatgt gcagtgtctg taaagaaaac aacaaatagt aatcgcaaaa
     4561 atcaattaga taccagtagg agaagacgcc aatttgatga agagtcgtta gaaagcttta
     4621 gcagtatgcc tgacccagta gatccaacaa cagtaactaa aacattcaag tcaagaaaag
     4681 catctgcaca ggccagcctg gcatctaaag ataaaactcc caaatcaaag agtaagaaga
     4741 ggcattctac tcagctgaaa agcagagtta aaaatattga aaccgggagt gatttttcca
     4801 tgtttgaagc tttgcgggat accatttatt ctgaagtagc tacgttgatt tctcaaaatg
     4861 aatctcgtcc acattttctt attgaactct tccatgaact tcagctactg aatacagact
     4921 atttgagaca gagggcttta tatgccttgc aggacatagt atccagacat atttctgaga
     4981 accatgaaaa agaaggggaa aacgtaaagt cagtgaattc tggtacttgg atagcatcaa
     5041 actcagaact tactcccagt gaaagccttg ctactactga tgatgaaact tttgagaaga
     5101 actttgagag agaaacacat aaaataagtg agcaaaatga tgctgataat gctagtgtca
     5161 cgtctgtatc ttcaaatttt gagccttttg caacagatga tctgggtaac actgtgattc
     5221 acttagatca agcattagcc agaatgagag aatatgagcg tatgaagact gagactgaaa
     5281 gtaacacaaa tgtcagatgc acctgcagga ttatagagga tgaggatggt gctgctgccc
     5341 cgactacggt tgatagttta gaagtggaaa ctcctattat tgaaaatcat agttcacagc
     5401 aatctgtaag tgaagtttct accgtcccat gtcctagaat tgatacacag caactggacc
     5461 ggcaaattaa agcaattatg aaagaagtca ttcccttttt gaaggagcac atggatgaag
     5521 tatgctcttc tcaacttcta acctcagtaa gacgcatggt tttgactctt acccagcaaa
     5581 acgatgagag caaagagttt gtaaagttct ttcataaaca acttggaagt atattacagg
     5641 attcactggc aaaatttgct ggcagaaaac tgaaagattg tggagaagat cttcttgtag
     5701 agatatctga agtgttattt aatgaattgg ctttctttaa actcatgcaa gatttggata
     5761 ataatagtat aactgttaaa cagagatgca aaaggaaaat tgaagcagct ggagtgatac
     5821 agtcttacgc aaaagaggcc aaaaggattc ttgaaggaga tcatggctca cctgctggag
     5881 aaattgatga tgaagacaaa gataaggatg agactgaaac agttaaacag agtcaaacat
     5941 ctgaggttta tgatggtgac ggtcccaaaa atgtgagctc tgatgtctct gatcaagagg
     6001 aagatgaaga aagtgaagaa tgtccagtgt ctattaattt gtccaaagct gaaactcagg
     6061 ctttgactaa ttatggaagt ggagaagatg agaatgaaga tgaagaaata gaagaatttg
     6121 aagagggacc tgtagatgtc cagacttcac tgcaggctaa cactgaaact acagaagaaa
     6181 atgaacatga cgatcaggtt ccacagcatg attttgaaaa atcagcggaa agcaaaaatg
     6241 tcccatcaga acaagaaccc actactagta aagatgacca agatagcact cctgtgaagc
     6301 cctgttacct caatatcttg gaaaatgagc aacctttaaa cagcactgtc caaaaggacg
     6361 ctcttactac catcgattca tctaatcagc ctaacgcttt gcctttacct ttaactgaaa
     6421 ttgaaacctt ggtgcctaga gtcaaagaag ttaaatccgc ccaggaaact cctgaaagct
     6481 ctttggctgg aagtcctgat actgaatctc cagtgttagt gaatgactat gaagcagaat
     6541 ctggtaacat aagtcaaaaa tctgatgaag aagactttgt gaaagttgaa gatttaccac
     6601 ttaaactgac aatatattca gaggcagatc taaggaagaa aatggtagaa gaagaacaga
     6661 aaaaccattt atctggtgaa atattacgtg aaatgcagac tgaagaacta gctgggaatt
     6721 ctcagacact aaaagaacct gagccaagtt atagtcccag atttccttct ttatgggtct
     6781 aatagcacaa cccaagggcc actcggagga gcacatttct tgcatcaagg tcaaagattt
     6841 tctttttgtt catcaattca tcagctgatt aaactcatat aagatttttt gtttttttta
     6901 agaaataggg tgaagagaag tgcaaaccaa atgtcaaacc ttcagttaat tcctcactct
     6961 tcagcccatt tctgcctgtt aggactcagt tggtaccctc tgcactgccg cctgtcctag
     7021 tgtgtctagg ctgcagcttc ctcccctctt ctctgtgcct ccatctcctt tgagcatcct
     7081 gggaacttgt tgtggttcgc catcctctgt tctctcacag ccactcttct tctgttctgg
     7141 gtttattcat ttttatactt cttttctttt ttttttctag tggggctttc ttttggagag
     7201 agaggaagta tctgcttagt ctgccgtctt aaaatggaaa cccttacctg tgccttttaa
     7261 actcttgctg tgtgttacca gggaattatt gtagcaaact aagtttcttt tgtaataact
     7321 ttatattaga aatgaaagtt ttaatggaag agagcagtat taaactaaat tctataaggt
     7381 cttaacttag taagtaattt ata
//
LOCUS       XM_032618248            8744 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X14, mRNA.
ACCESSION   XM_032618248
VERSION     XM_032618248.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8744
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8744
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 23 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6770
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X14"
                     /protein_id="XP_032474139.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLA
                     DCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKI
                     SRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGN
                     TNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQ
                     LSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEML
                     REELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATW
                     GGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVK
                     ETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQ
                     LKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYT
                     QLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVN
                     LFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFP
                     KPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNS
                     NRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPK
                     SKSKKRHSTQLKSRVKNIETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHE
                     LQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLA
                     TTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARM
                     REYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVS
                     TVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESK
                     EFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNS
                     ITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTS
                     EVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEE
                     FEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDST
                     PVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQ
                     ETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRK
                     KMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPETVGAQST"
     misc_feature    4788..6686
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagcag
     2641 attgtcgata caatagagaa caagaacagg ggattcacgt tgcacaaggt gaaggtgagg
     2701 aggaggaaga ggaagaagca gaagatgagg cagtcagtgg agcgtcatta tctagtcatc
     2761 ggagcagtct ggttgatgag acgcctgaag atgctgaatt tgaacagaag atcagcagac
     2821 ttatggctgc aaaacagaaa cttagacagt tacaagatct tgttgcattg gtgcaggatg
     2881 atgatacagc agatcaagga gttatctctg ccaatacctc aaatttggat gatttctacc
     2941 cagcagaaga agacaccaaa caaaatgcaa ataacactag aggaaatacc aataaaacac
     3001 agaaagatgc tggagtaaat gaaaaggcaa gagagaaatt ttatgaggct aaactacagc
     3061 agcaacagag agagctcaaa caattgcagg aagaaagaaa gaaactgatt gagattcaag
     3121 agaaaattca agcattgcaa aaggcatgtc ctgacctaca gctgtcagcc actagtgcag
     3181 gtaattgtcc cacaaaaaaa tatatgccag ctgttacttc aaccccaact gttaatgaaa
     3241 atgaagccag tacaagcaga tctgcttttg aacctgatga tccttcagtg gtagataatg
     3301 agttgtggtc agaaatgcga agacacgaaa tgttaaggga agagctgcga cagagaagaa
     3361 agcagcttga agctttgatg gctgaacatc agaggaggca aggtctggct gaaactacat
     3421 ctccagtggc tgtttcactg agaagtgatg ggtctgagaa cctgtgtacg cctcaacaga
     3481 gtagaacaga aaaaacaatg gcaacttggg gaggttctat ccagtgtgca ctagatggag
     3541 aaggagatga agatggttac ctttctgaag cagttgttcg gacagatgaa gacgaggagg
     3601 aggaggagca agacgccggc tcccatgata gcttttccgt gtgtcctcct agcagcgcaa
     3661 atcataactc ctataatgta aaggaaacta aaaataggtg gaagaacaat cgcccttttt
     3721 cagcagatgg aaattatcgt cctttagcca ggacaagaca acagaatatc agcatgcagc
     3781 gtcaggaaaa ccttcgctgg gtgtcagaac tctcttatgt agaagagaaa gaacagtggc
     3841 aagaacaaat caatcagcta aagaaacaac ttgatttcag tgtcagtatt tgtcagactt
     3901 tgatgcaaga ccagcagact ctgtcttgtc tgctacaaac tcttctcacg ggcccttaca
     3961 gtgttatgcc cagcaatgtt gcatctcctc aagtacacct tataatgcac cagttgaacc
     4021 agtgctacac ccagctaaca tggcaacaga ataatgtaca aaggttgaag caaacgctaa
     4081 atgaacttat gcgccaacaa aatcatccag aaaaacctgg aagcaaggaa agagtcagta
     4141 gtgcatcaca ccctccttct cccagtttat tttgtccttt cagctttcca gcacagcctg
     4201 taaatctgtt caacctaccg gggtttacta atttttcatc atttgcacca ggtatgaatt
     4261 tcagcccttt atttccttct aattttggag atttttctca aaatatttct acacccactg
     4321 aacagcagca accattagcc cagaatcttt cagggaaaac agaatacatg gcttttccaa
     4381 aaccttttga aagtagttct tctgttggag cagaaaaaca aaggaatcaa aaacagcccg
     4441 aagaggaggt ggagaacagt aggacaccat ggttatatga ccaagaaggt gaagtagaaa
     4501 aaccatttct caagactgga tgtgcagtgt ctgtaaagaa aacaacaaat agtaatcgca
     4561 aaaatcaatt agataccagt aggagaagac gccaatttga tgaagagtcg ttagaaagct
     4621 ttagcagtat gcctgaccca gtagatccaa caacagtaac taaaacattc aagtcaagaa
     4681 aagcatctgc acaggccagc ctggcatcta aagataaaac tcccaaatca aagagtaaga
     4741 agaggcattc tactcagctg aaaagcagag ttaaaaatat tgaaaccggg agtgattttt
     4801 ccatgtttga agctttgcgg gataccattt attctgaagt agctacgttg atttctcaaa
     4861 atgaatctcg tccacatttt cttattgaac tcttccatga acttcagcta ctgaatacag
     4921 actatttgag acagagggct ttatatgcct tgcaggacat agtatccaga catatttctg
     4981 agaaccatga aaaagaaggg gaaaacgtaa agtcagtgaa ttctggtact tggatagcat
     5041 caaactcaga acttactccc agtgaaagcc ttgctactac tgatgatgaa acttttgaga
     5101 agaactttga gagagaaaca cataaaataa gtgagcaaaa tgatgctgat aatgctagtg
     5161 tcacgtctgt atcttcaaat tttgagcctt ttgcaacaga tgatctgggt aacactgtga
     5221 ttcacttaga tcaagcatta gccagaatga gagaatatga gcgtatgaag actgagactg
     5281 aaagtaacac aaatgtcaga tgcacctgca ggattataga ggatgaggat ggtgctgctg
     5341 ccccgactac ggttgatagt ttagaagtgg aaactcctat tattgaaaat catagttcac
     5401 agcaatctgt aagtgaagtt tctaccgtcc catgtcctag aattgataca cagcaactgg
     5461 accggcaaat taaagcaatt atgaaagaag tcattccctt tttgaaggag cacatggatg
     5521 aagtatgctc ttctcaactt ctaacctcag taagacgcat ggttttgact cttacccagc
     5581 aaaacgatga gagcaaagag tttgtaaagt tctttcataa acaacttgga agtatattac
     5641 aggattcact ggcaaaattt gctggcagaa aactgaaaga ttgtggagaa gatcttcttg
     5701 tagagatatc tgaagtgtta tttaatgaat tggctttctt taaactcatg caagatttgg
     5761 ataataatag tataactgtt aaacagagat gcaaaaggaa aattgaagca gctggagtga
     5821 tacagtctta cgcaaaagag gccaaaagga ttcttgaagg agatcatggc tcacctgctg
     5881 gagaaattga tgatgaagac aaagataagg atgagactga aacagttaaa cagagtcaaa
     5941 catctgaggt ttatgatggt gacggtccca aaaatgtgag ctctgatgtc tctgatcaag
     6001 aggaagatga agaaagtgaa gaatgtccag tgtctattaa tttgtccaaa gctgaaactc
     6061 aggctttgac taattatgga agtggagaag atgagaatga agatgaagaa atagaagaat
     6121 ttgaagaggg acctgtagat gtccagactt cactgcaggc taacactgaa actacagaag
     6181 aaaatgaaca tgacgatcag gttccacagc atgattttga aaaatcagcg gaaagcaaaa
     6241 atgtcccatc agaacaagaa cccactacta gtaaagatga ccaagatagc actcctgtga
     6301 agccctgtta cctcaatatc ttggaaaatg agcaaccttt aaacagcact gtccaaaagg
     6361 acgctcttac taccatcgat tcatctaatc agcctaacgc tttgccttta cctttaactg
     6421 aaattgaaac cttggtgcct agagtcaaag aagttaaatc cgcccaggaa actcctgaaa
     6481 gctctttggc tggaagtcct gatactgaat ctccagtgtt agtgaatgac tatgaagcag
     6541 aatctggtaa cataagtcaa aaatctgatg aagaagactt tgtgaaagtt gaagatttac
     6601 cacttaaact gacaatatat tcagaggcag atctaaggaa gaaaatggta gaagaagaac
     6661 agaaaaacca tttatctggt gaaatattac gtgaaatgca gactgaagaa ctagctggga
     6721 attctcagac actaaaagaa cctgaaacag tgggagccca aagtacatga gatgtcttca
     6781 gaggctcatc taactctctt tacatagtca atgcatatat ggaaatggca ctaaataaac
     6841 atctgttttg atctgtaaaa aatgtaaatt agtttgacac tgcatttttg gtaggtgtgc
     6901 taatttctgc ccatggcagt ttaaaacatc aaaaactgaa ttctggacag attcaagcct
     6961 tgatacactg tggggttttt ttctttttct ttctgtcatt ttttttggtc ttgatttttt
     7021 ttccccattg tgatgtttgg taacgttaaa tttaaaatgt agttttaaat aaagtttgga
     7081 cttaacctgt aaactatctt ttttggaaat tatgttgaat tctatacagc aagtcactgt
     7141 tctgtataat taggctattc aaagagcaat ggtcaagagt tagagaaata tactatttat
     7201 tgtaaagccc agcctttagg ccaggcttcc aaataatgcc agtgttgctg ctattgggtc
     7261 tcatgttctt ttagatactt gcatgtctta ttcctgtgca agaatagggc aggttataaa
     7321 ggtttccagg ttattgtaga atatatatta atattctatt caaattggat gataagttta
     7381 gaatacttgt ccttagtacg tagaacttac ataattatct attagataaa tattttctag
     7441 aatttcaatt catatctgtg ttgcctcagt ctaaaagtaa aaaaaaaaaa gttttctata
     7501 attagtattt ctgcacagcc aagtaaagta acattgtgat taattttaaa aggaaaacca
     7561 agatctttaa agtagagatt aatagaacta aatttatgta ccagcacatt aaagttctat
     7621 atgccttcgg acaaccttgc cttttgagat gatagtttag ccaaagcata gcagttgctt
     7681 ctgtatgcag tgagagagaa gcaggttcgc agaggaagtt ttgagtaacg aaaatctaca
     7741 tgacctcttt gtcatgaagt aaatcagctt ctaaaggtgg tgtagcttta gatcccaaac
     7801 ttgccacata cccagtaagg cttcacatag ccagttaaca attaagtcat ctttacagat
     7861 tccttcttga ataaaatatg aagaattgtt ccaaatagtc ttttaagttt gtcaacaatt
     7921 aactgaagta tcccataaga agagaatttg gttggtattc ctttgaaatt cttgcctgat
     7981 acctcagtgt aaaagtccag tcagggagta ttaaatgagg atttccctat gagggcattg
     8041 actgtattgc tccataactt aaattatggg agacatatat ctccaacttt ctgaattagt
     8101 aaaacttatt cagaaaactg tcatcccaga aacaggaatt cttattcaat tggcttgact
     8161 tcagggaaac tgaaacataa gttacattat atgtatactt aagttctgta tttgttttct
     8221 agactctgta cagaaacttc attttgatac tcaagccaag ccttacatat taagactgtc
     8281 tgtctctctc tctgcatgca ttttaaagat cgatacagtg gaagcgttgt acttatacct
     8341 tagttattac tgtagtatct gtgaaccgta tcaaacttgc ttatttgact tatgttatag
     8401 ctgttgtaat atggtctgtt tttttctatt atagtagata atttagtttt aaaataccta
     8461 ggacttgaga gcagataact tgtttaatat gtttttccct ggtaactgtt gctaaagggt
     8521 taggcattga atattactgt ttgtcttcat ttttaagtta aaaatttggt tagagataaa
     8581 agaggaagaa aaggtcaaaa tgagtgagag agaaacctcg caggttgaaa taatgcctaa
     8641 aagagtgagc tcgccagact gtgcagcagg cactctttgt attttgtaac attcactttg
     8701 ggtaaatgct ttttcactgt taataaatgt atatcctgca taca
//
LOCUS       XM_032618250            8741 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X15, mRNA.
ACCESSION   XM_032618250
VERSION     XM_032618250.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8741
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8741
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6767
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X15"
                     /protein_id="XP_032474141.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTEASFSLRIRPCIEDKLGNSASQEQVSDIDVTTSP
                     KGKGDRPPQNDRELRPNRKYSRKRGFPSKARDPQQEPMEEIENLKKQHDLLKRMLQQQ
                     EQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVP
                     LRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTRE
                     VSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSS
                     ASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNP
                     TEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEP
                     VTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLD
                     CRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKIS
                     RLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNT
                     NKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQL
                     SATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLR
                     EELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWG
                     GSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKE
                     TKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQL
                     KKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQ
                     LTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNL
                     FNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPK
                     PFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSN
                     RKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKS
                     KSKKRHSTQLKSRVKNIETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHEL
                     QLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLAT
                     TDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMR
                     EYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVST
                     VPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKE
                     FVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSI
                     TVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSE
                     VYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEF
                     EEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTP
                     VKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQE
                     TPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKK
                     MVEEEQKNHLSGEILREMQTEELAGNSQTLKEPETVGAQST"
     misc_feature    4785..6683
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 aggcatcttt tagtctgaga attcggccgt gcattgagga caaactaggg aattcagctt
     1381 cacaagaaca ggtttcagac attgacgtta caacaagtcc aaaagggaaa ggtgacagac
     1441 ctcctcagaa tgacagggaa ctgaggccta ataggaaata tagccgaaaa cgtggatttc
     1501 cctcaaaggc cagagatcct cagcaggagc ctatggaaga gatagaaaat ttgaagaaac
     1561 aacacgattt attaaaaagg atgttacagc agcaggagca gctgagagct ctgcagggac
     1621 gacaagctgc tcttcttgct ctgcagcata aggcagagca agctattgct gtgatggatg
     1681 attctgaaaa ggttgcaggg acaactcctg gtcatcatac tgtaccgtgc agacagccag
     1741 ctcgctctcc ttttcatcag agagtaccct taagagttgt aacagaaact acaggtagcc
     1801 tatctggagt cagtatcaca tctgaactaa atgaagaatt gaatgattta attcagcgtt
     1861 ttcataatca gcttcgtgat tctcagcctc cacctgttcc agacaataga agacaagcag
     1921 aaagtctttc attaactagg gaggtttctc agagcagaaa tccatcagtt tcagagcatt
     1981 tacctgatga gaaagtccag ctttttagca aaatgagagt gttacaagaa aagaaacaaa
     2041 aaatggacaa gctgcttgga gaacttcata cacttcgaga tgagcatttg aacaattcat
     2101 cctttgtgcc ttcttcagcc tccccacaaa ggagtgtgga tcagagaagt acaaccgcag
     2161 ctccctctgc tcctgtaggc ttaacaccag ttgtcaatgg agaatccaat agcctcacat
     2221 catctgttcc ttatcctgct gcttctctag tttctcagaa tcagagtgaa aatgaaggcc
     2281 acctaaatcc aactgaaaaa ctccagaagt taaatgaagt tcgaaagagg ttgaatgagc
     2341 taagagagtt agttcattat tacgagcaaa catcagatat gatgacagat gctgtaaatg
     2401 aaaacacaaa agaagaagaa actgaagagt cagaatatga ttccgagcat gaaaattctg
     2461 aacctgttac taacattcga aatccacaag tagctgccac ctggaatgaa gtaaatagta
     2521 attctaaggc acagtgtgtt tctaataata gagatgggag atcagttaat tctaattgtg
     2581 aaattaacaa cagatctgct gccaacataa gggctctaaa catgcctcct tctttagatt
     2641 gtcgatacaa tagagaacaa gaacagggga ttcacgttgc acaaggtgaa ggtgaggagg
     2701 aggaagagga agaagcagaa gatgaggcag tcagtggagc gtcattatct agtcatcgga
     2761 gcagtctggt tgatgagacg cctgaagatg ctgaatttga acagaagatc agcagactta
     2821 tggctgcaaa acagaaactt agacagttac aagatcttgt tgcattggtg caggatgatg
     2881 atacagcaga tcaaggagtt atctctgcca atacctcaaa tttggatgat ttctacccag
     2941 cagaagaaga caccaaacaa aatgcaaata acactagagg aaataccaat aaaacacaga
     3001 aagatgctgg agtaaatgaa aaggcaagag agaaatttta tgaggctaaa ctacagcagc
     3061 aacagagaga gctcaaacaa ttgcaggaag aaagaaagaa actgattgag attcaagaga
     3121 aaattcaagc attgcaaaag gcatgtcctg acctacagct gtcagccact agtgcaggta
     3181 attgtcccac aaaaaaatat atgccagctg ttacttcaac cccaactgtt aatgaaaatg
     3241 aagccagtac aagcagatct gcttttgaac ctgatgatcc ttcagtggta gataatgagt
     3301 tgtggtcaga aatgcgaaga cacgaaatgt taagggaaga gctgcgacag agaagaaagc
     3361 agcttgaagc tttgatggct gaacatcaga ggaggcaagg tctggctgaa actacatctc
     3421 cagtggctgt ttcactgaga agtgatgggt ctgagaacct gtgtacgcct caacagagta
     3481 gaacagaaaa aacaatggca acttggggag gttctatcca gtgtgcacta gatggagaag
     3541 gagatgaaga tggttacctt tctgaagcag ttgttcggac agatgaagac gaggaggagg
     3601 aggagcaaga cgccggctcc catgatagct tttccgtgtg tcctcctagc agcgcaaatc
     3661 ataactccta taatgtaaag gaaactaaaa ataggtggaa gaacaatcgc cctttttcag
     3721 cagatggaaa ttatcgtcct ttagccagga caagacaaca gaatatcagc atgcagcgtc
     3781 aggaaaacct tcgctgggtg tcagaactct cttatgtaga agagaaagaa cagtggcaag
     3841 aacaaatcaa tcagctaaag aaacaacttg atttcagtgt cagtatttgt cagactttga
     3901 tgcaagacca gcagactctg tcttgtctgc tacaaactct tctcacgggc ccttacagtg
     3961 ttatgcccag caatgttgca tctcctcaag tacaccttat aatgcaccag ttgaaccagt
     4021 gctacaccca gctaacatgg caacagaata atgtacaaag gttgaagcaa acgctaaatg
     4081 aacttatgcg ccaacaaaat catccagaaa aacctggaag caaggaaaga gtcagtagtg
     4141 catcacaccc tccttctccc agtttatttt gtcctttcag ctttccagca cagcctgtaa
     4201 atctgttcaa cctaccgggg tttactaatt tttcatcatt tgcaccaggt atgaatttca
     4261 gccctttatt tccttctaat tttggagatt tttctcaaaa tatttctaca cccactgaac
     4321 agcagcaacc attagcccag aatctttcag ggaaaacaga atacatggct tttccaaaac
     4381 cttttgaaag tagttcttct gttggagcag aaaaacaaag gaatcaaaaa cagcccgaag
     4441 aggaggtgga gaacagtagg acaccatggt tatatgacca agaaggtgaa gtagaaaaac
     4501 catttctcaa gactggatgt gcagtgtctg taaagaaaac aacaaatagt aatcgcaaaa
     4561 atcaattaga taccagtagg agaagacgcc aatttgatga agagtcgtta gaaagcttta
     4621 gcagtatgcc tgacccagta gatccaacaa cagtaactaa aacattcaag tcaagaaaag
     4681 catctgcaca ggccagcctg gcatctaaag ataaaactcc caaatcaaag agtaagaaga
     4741 ggcattctac tcagctgaaa agcagagtta aaaatattga aaccgggagt gatttttcca
     4801 tgtttgaagc tttgcgggat accatttatt ctgaagtagc tacgttgatt tctcaaaatg
     4861 aatctcgtcc acattttctt attgaactct tccatgaact tcagctactg aatacagact
     4921 atttgagaca gagggcttta tatgccttgc aggacatagt atccagacat atttctgaga
     4981 accatgaaaa agaaggggaa aacgtaaagt cagtgaattc tggtacttgg atagcatcaa
     5041 actcagaact tactcccagt gaaagccttg ctactactga tgatgaaact tttgagaaga
     5101 actttgagag agaaacacat aaaataagtg agcaaaatga tgctgataat gctagtgtca
     5161 cgtctgtatc ttcaaatttt gagccttttg caacagatga tctgggtaac actgtgattc
     5221 acttagatca agcattagcc agaatgagag aatatgagcg tatgaagact gagactgaaa
     5281 gtaacacaaa tgtcagatgc acctgcagga ttatagagga tgaggatggt gctgctgccc
     5341 cgactacggt tgatagttta gaagtggaaa ctcctattat tgaaaatcat agttcacagc
     5401 aatctgtaag tgaagtttct accgtcccat gtcctagaat tgatacacag caactggacc
     5461 ggcaaattaa agcaattatg aaagaagtca ttcccttttt gaaggagcac atggatgaag
     5521 tatgctcttc tcaacttcta acctcagtaa gacgcatggt tttgactctt acccagcaaa
     5581 acgatgagag caaagagttt gtaaagttct ttcataaaca acttggaagt atattacagg
     5641 attcactggc aaaatttgct ggcagaaaac tgaaagattg tggagaagat cttcttgtag
     5701 agatatctga agtgttattt aatgaattgg ctttctttaa actcatgcaa gatttggata
     5761 ataatagtat aactgttaaa cagagatgca aaaggaaaat tgaagcagct ggagtgatac
     5821 agtcttacgc aaaagaggcc aaaaggattc ttgaaggaga tcatggctca cctgctggag
     5881 aaattgatga tgaagacaaa gataaggatg agactgaaac agttaaacag agtcaaacat
     5941 ctgaggttta tgatggtgac ggtcccaaaa atgtgagctc tgatgtctct gatcaagagg
     6001 aagatgaaga aagtgaagaa tgtccagtgt ctattaattt gtccaaagct gaaactcagg
     6061 ctttgactaa ttatggaagt ggagaagatg agaatgaaga tgaagaaata gaagaatttg
     6121 aagagggacc tgtagatgtc cagacttcac tgcaggctaa cactgaaact acagaagaaa
     6181 atgaacatga cgatcaggtt ccacagcatg attttgaaaa atcagcggaa agcaaaaatg
     6241 tcccatcaga acaagaaccc actactagta aagatgacca agatagcact cctgtgaagc
     6301 cctgttacct caatatcttg gaaaatgagc aacctttaaa cagcactgtc caaaaggacg
     6361 ctcttactac catcgattca tctaatcagc ctaacgcttt gcctttacct ttaactgaaa
     6421 ttgaaacctt ggtgcctaga gtcaaagaag ttaaatccgc ccaggaaact cctgaaagct
     6481 ctttggctgg aagtcctgat actgaatctc cagtgttagt gaatgactat gaagcagaat
     6541 ctggtaacat aagtcaaaaa tctgatgaag aagactttgt gaaagttgaa gatttaccac
     6601 ttaaactgac aatatattca gaggcagatc taaggaagaa aatggtagaa gaagaacaga
     6661 aaaaccattt atctggtgaa atattacgtg aaatgcagac tgaagaacta gctgggaatt
     6721 ctcagacact aaaagaacct gaaacagtgg gagcccaaag tacatgagat gtcttcagag
     6781 gctcatctaa ctctctttac atagtcaatg catatatgga aatggcacta aataaacatc
     6841 tgttttgatc tgtaaaaaat gtaaattagt ttgacactgc atttttggta ggtgtgctaa
     6901 tttctgccca tggcagttta aaacatcaaa aactgaattc tggacagatt caagccttga
     6961 tacactgtgg ggtttttttc tttttctttc tgtcattttt tttggtcttg attttttttc
     7021 cccattgtga tgtttggtaa cgttaaattt aaaatgtagt tttaaataaa gtttggactt
     7081 aacctgtaaa ctatcttttt tggaaattat gttgaattct atacagcaag tcactgttct
     7141 gtataattag gctattcaaa gagcaatggt caagagttag agaaatatac tatttattgt
     7201 aaagcccagc ctttaggcca ggcttccaaa taatgccagt gttgctgcta ttgggtctca
     7261 tgttctttta gatacttgca tgtcttattc ctgtgcaaga atagggcagg ttataaaggt
     7321 ttccaggtta ttgtagaata tatattaata ttctattcaa attggatgat aagtttagaa
     7381 tacttgtcct tagtacgtag aacttacata attatctatt agataaatat tttctagaat
     7441 ttcaattcat atctgtgttg cctcagtcta aaagtaaaaa aaaaaaagtt ttctataatt
     7501 agtatttctg cacagccaag taaagtaaca ttgtgattaa ttttaaaagg aaaaccaaga
     7561 tctttaaagt agagattaat agaactaaat ttatgtacca gcacattaaa gttctatatg
     7621 ccttcggaca accttgcctt ttgagatgat agtttagcca aagcatagca gttgcttctg
     7681 tatgcagtga gagagaagca ggttcgcaga ggaagttttg agtaacgaaa atctacatga
     7741 cctctttgtc atgaagtaaa tcagcttcta aaggtggtgt agctttagat cccaaacttg
     7801 ccacataccc agtaaggctt cacatagcca gttaacaatt aagtcatctt tacagattcc
     7861 ttcttgaata aaatatgaag aattgttcca aatagtcttt taagtttgtc aacaattaac
     7921 tgaagtatcc cataagaaga gaatttggtt ggtattcctt tgaaattctt gcctgatacc
     7981 tcagtgtaaa agtccagtca gggagtatta aatgaggatt tccctatgag ggcattgact
     8041 gtattgctcc ataacttaaa ttatgggaga catatatctc caactttctg aattagtaaa
     8101 acttattcag aaaactgtca tcccagaaac aggaattctt attcaattgg cttgacttca
     8161 gggaaactga aacataagtt acattatatg tatacttaag ttctgtattt gttttctaga
     8221 ctctgtacag aaacttcatt ttgatactca agccaagcct tacatattaa gactgtctgt
     8281 ctctctctct gcatgcattt taaagatcga tacagtggaa gcgttgtact tataccttag
     8341 ttattactgt agtatctgtg aaccgtatca aacttgctta tttgacttat gttatagctg
     8401 ttgtaatatg gtctgttttt ttctattata gtagataatt tagttttaaa atacctagga
     8461 cttgagagca gataacttgt ttaatatgtt tttccctggt aactgttgct aaagggttag
     8521 gcattgaata ttactgtttg tcttcatttt taagttaaaa atttggttag agataaaaga
     8581 ggaagaaaag gtcaaaatga gtgagagaga aacctcgcag gttgaaataa tgcctaaaag
     8641 agtgagctcg ccagactgtg cagcaggcac tctttgtatt ttgtaacatt cactttgggt
     8701 aaatgctttt tcactgttaa taaatgtata tcctgcatac a
//
LOCUS       XM_032618251            8720 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X16, mRNA.
ACCESSION   XM_032618251
VERSION     XM_032618251.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8720
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8720
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 33 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6746
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X16"
                     /protein_id="XP_032474142.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVPLRVVT
                     ETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSR
                     NPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQR
                     SVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQ
                     KLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIR
                     NPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLADCRYN
                     REQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMA
                     AKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQ
                     KDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATS
                     AGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELR
                     QRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQ
                     CALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNR
                     WKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQL
                     DFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQ
                     QNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLP
                     GFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFES
                     SSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQ
                     LDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKK
                     RHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVL
                     RYSRSTEMSSETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDY
                     LRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFE
                     KNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKT
                     ETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRID
                     TQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHK
                     QLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCK
                     RKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGP
                     KNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDV
                     QTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLN
                     ILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLA
                     GSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQK
                     NHLSGEILREMQTEELAGNSQTLKEPETVGAQST"
     misc_feature    4764..6662
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa caacacgatt
     1381 tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga cgacaagctg
     1441 ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat gattctgaaa
     1501 aggttgcagg gacaactcct ggtcatcata ctgtaccgtg cagacagcca gctcgctctc
     1561 cttttcatca gagagtaccc ttaagagttg taacagaaac tacaggtagc ctatctggag
     1621 tcagtatcac atctgaacta aatgaagaat tgaatgattt aattcagcgt tttcataatc
     1681 agcttcgtga ttctcagcct ccacctgttc cagacaatag aagacaagca gaaagtcttt
     1741 cattaactag ggaggtttct cagagcagaa atccatcagt ttcagagcat ttacctgatg
     1801 agaaagtcca gctttttagc aaaatgagag tgttacaaga aaagaaacaa aaaatggaca
     1861 agctgcttgg agaacttcat acacttcgag atgagcattt gaacaattca tcctttgtgc
     1921 cttcttcagc ctccccacaa aggagtgtgg atcagagaag tacaaccgca gctccctctg
     1981 ctcctgtagg cttaacacca gttgtcaatg gagaatccaa tagcctcaca tcatctgttc
     2041 cttatcctgc tgcttctcta gtttctcaga atcagagtga aaatgaaggc cacctaaatc
     2101 caactgaaaa actccagaag ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt
     2161 tagttcatta ttacgagcaa acatcagata tgatgacaga tgctgtaaat gaaaacacaa
     2221 aagaagaaga aactgaagag tcagaatatg attccgagca tgaaaattct gaacctgtta
     2281 ctaacattcg aaatccacaa gtagctgcca cctggaatga agtaaatagt aattctaagg
     2341 cacagtgtgt ttctaataat agagatggga gatcagttaa ttctaattgt gaaattaaca
     2401 acagatctgc tgccaacata agggctctaa acatgcctcc ttctttagca gattgtcgat
     2461 acaatagaga acaagaacag gggattcacg ttgcacaagg tgaaggtgag gaggaggaag
     2521 aggaagaagc agaagatgag gcagtcagtg gagcgtcatt atctagtcat cggagcagtc
     2581 tggttgatga gacgcctgaa gatgctgaat ttgaacagaa gatcagcaga cttatggctg
     2641 caaaacagaa acttagacag ttacaagatc ttgttgcatt ggtgcaggat gatgatacag
     2701 cagatcaagg agttatctct gccaatacct caaatttgga tgatttctac ccagcagaag
     2761 aagacaccaa acaaaatgca aataacacta gaggaaatac caataaaaca cagaaagatg
     2821 ctggagtaaa tgaaaaggca agagagaaat tttatgaggc taaactacag cagcaacaga
     2881 gagagctcaa acaattgcag gaagaaagaa agaaactgat tgagattcaa gagaaaattc
     2941 aagcattgca aaaggcatgt cctgacctac agctgtcagc cactagtgca ggtaattgtc
     3001 ccacaaaaaa atatatgcca gctgttactt caaccccaac tgttaatgaa aatgaagcca
     3061 gtacaagcag atctgctttt gaacctgatg atccttcagt ggtagataat gagttgtggt
     3121 cagaaatgcg aagacacgaa atgttaaggg aagagctgcg acagagaaga aagcagcttg
     3181 aagctttgat ggctgaacat cagaggaggc aaggtctggc tgaaactaca tctccagtgg
     3241 ctgtttcact gagaagtgat gggtctgaga acctgtgtac gcctcaacag agtagaacag
     3301 aaaaaacaat ggcaacttgg ggaggttcta tccagtgtgc actagatgga gaaggagatg
     3361 aagatggtta cctttctgaa gcagttgttc ggacagatga agacgaggag gaggaggagc
     3421 aagacgccgg ctcccatgat agcttttccg tgtgtcctcc tagcagcgca aatcataact
     3481 cctataatgt aaaggaaact aaaaataggt ggaagaacaa tcgccctttt tcagcagatg
     3541 gaaattatcg tcctttagcc aggacaagac aacagaatat cagcatgcag cgtcaggaaa
     3601 accttcgctg ggtgtcagaa ctctcttatg tagaagagaa agaacagtgg caagaacaaa
     3661 tcaatcagct aaagaaacaa cttgatttca gtgtcagtat ttgtcagact ttgatgcaag
     3721 accagcagac tctgtcttgt ctgctacaaa ctcttctcac gggcccttac agtgttatgc
     3781 ccagcaatgt tgcatctcct caagtacacc ttataatgca ccagttgaac cagtgctaca
     3841 cccagctaac atggcaacag aataatgtac aaaggttgaa gcaaacgcta aatgaactta
     3901 tgcgccaaca aaatcatcca gaaaaacctg gaagcaagga aagagtcagt agtgcatcac
     3961 accctccttc tcccagttta ttttgtcctt tcagctttcc agcacagcct gtaaatctgt
     4021 tcaacctacc ggggtttact aatttttcat catttgcacc aggtatgaat ttcagccctt
     4081 tatttccttc taattttgga gatttttctc aaaatatttc tacacccact gaacagcagc
     4141 aaccattagc ccagaatctt tcagggaaaa cagaatacat ggcttttcca aaaccttttg
     4201 aaagtagttc ttctgttgga gcagaaaaac aaaggaatca aaaacagccc gaagaggagg
     4261 tggagaacag taggacacca tggttatatg accaagaagg tgaagtagaa aaaccatttc
     4321 tcaagactgg atgtgcagtg tctgtaaaga aaacaacaaa tagtaatcgc aaaaatcaat
     4381 tagataccag taggagaaga cgccaatttg atgaagagtc gttagaaagc tttagcagta
     4441 tgcctgaccc agtagatcca acaacagtaa ctaaaacatt caagtcaaga aaagcatctg
     4501 cacaggccag cctggcatct aaagataaaa ctcccaaatc aaagagtaag aagaggcatt
     4561 ctactcagct gaaaagcaga gttaaaaata ttgggtatga aagtgccagt atgtctagca
     4621 catgtgaacc ttgcaaaagt aggaacagac attcagccca gactgaagag cctgttcaag
     4681 caaaagtatt cagcagaaag aatcatgagc agctggaaaa agtactaaga tatagtaggt
     4741 ctacagaaat gtcttcagaa accgggagtg atttttccat gtttgaagct ttgcgggata
     4801 ccatttattc tgaagtagct acgttgattt ctcaaaatga atctcgtcca cattttctta
     4861 ttgaactctt ccatgaactt cagctactga atacagacta tttgagacag agggctttat
     4921 atgccttgca ggacatagta tccagacata tttctgagaa ccatgaaaaa gaaggggaaa
     4981 acgtaaagtc agtgaattct ggtacttgga tagcatcaaa ctcagaactt actcccagtg
     5041 aaagccttgc tactactgat gatgaaactt ttgagaagaa ctttgagaga gaaacacata
     5101 aaataagtga gcaaaatgat gctgataatg ctagtgtcac gtctgtatct tcaaattttg
     5161 agccttttgc aacagatgat ctgggtaaca ctgtgattca cttagatcaa gcattagcca
     5221 gaatgagaga atatgagcgt atgaagactg agactgaaag taacacaaat gtcagatgca
     5281 cctgcaggat tatagaggat gaggatggtg ctgctgcccc gactacggtt gatagtttag
     5341 aagtggaaac tcctattatt gaaaatcata gttcacagca atctgtaagt gaagtttcta
     5401 ccgtcccatg tcctagaatt gatacacagc aactggaccg gcaaattaaa gcaattatga
     5461 aagaagtcat tccctttttg aaggagcaca tggatgaagt atgctcttct caacttctaa
     5521 cctcagtaag acgcatggtt ttgactctta cccagcaaaa cgatgagagc aaagagtttg
     5581 taaagttctt tcataaacaa cttggaagta tattacagga ttcactggca aaatttgctg
     5641 gcagaaaact gaaagattgt ggagaagatc ttcttgtaga gatatctgaa gtgttattta
     5701 atgaattggc tttctttaaa ctcatgcaag atttggataa taatagtata actgttaaac
     5761 agagatgcaa aaggaaaatt gaagcagctg gagtgataca gtcttacgca aaagaggcca
     5821 aaaggattct tgaaggagat catggctcac ctgctggaga aattgatgat gaagacaaag
     5881 ataaggatga gactgaaaca gttaaacaga gtcaaacatc tgaggtttat gatggtgacg
     5941 gtcccaaaaa tgtgagctct gatgtctctg atcaagagga agatgaagaa agtgaagaat
     6001 gtccagtgtc tattaatttg tccaaagctg aaactcaggc tttgactaat tatggaagtg
     6061 gagaagatga gaatgaagat gaagaaatag aagaatttga agagggacct gtagatgtcc
     6121 agacttcact gcaggctaac actgaaacta cagaagaaaa tgaacatgac gatcaggttc
     6181 cacagcatga ttttgaaaaa tcagcggaaa gcaaaaatgt cccatcagaa caagaaccca
     6241 ctactagtaa agatgaccaa gatagcactc ctgtgaagcc ctgttacctc aatatcttgg
     6301 aaaatgagca acctttaaac agcactgtcc aaaaggacgc tcttactacc atcgattcat
     6361 ctaatcagcc taacgctttg cctttacctt taactgaaat tgaaaccttg gtgcctagag
     6421 tcaaagaagt taaatccgcc caggaaactc ctgaaagctc tttggctgga agtcctgata
     6481 ctgaatctcc agtgttagtg aatgactatg aagcagaatc tggtaacata agtcaaaaat
     6541 ctgatgaaga agactttgtg aaagttgaag atttaccact taaactgaca atatattcag
     6601 aggcagatct aaggaagaaa atggtagaag aagaacagaa aaaccattta tctggtgaaa
     6661 tattacgtga aatgcagact gaagaactag ctgggaattc tcagacacta aaagaacctg
     6721 aaacagtggg agcccaaagt acatgagatg tcttcagagg ctcatctaac tctctttaca
     6781 tagtcaatgc atatatggaa atggcactaa ataaacatct gttttgatct gtaaaaaatg
     6841 taaattagtt tgacactgca tttttggtag gtgtgctaat ttctgcccat ggcagtttaa
     6901 aacatcaaaa actgaattct ggacagattc aagccttgat acactgtggg gtttttttct
     6961 ttttctttct gtcatttttt ttggtcttga ttttttttcc ccattgtgat gtttggtaac
     7021 gttaaattta aaatgtagtt ttaaataaag tttggactta acctgtaaac tatctttttt
     7081 ggaaattatg ttgaattcta tacagcaagt cactgttctg tataattagg ctattcaaag
     7141 agcaatggtc aagagttaga gaaatatact atttattgta aagcccagcc tttaggccag
     7201 gcttccaaat aatgccagtg ttgctgctat tgggtctcat gttcttttag atacttgcat
     7261 gtcttattcc tgtgcaagaa tagggcaggt tataaaggtt tccaggttat tgtagaatat
     7321 atattaatat tctattcaaa ttggatgata agtttagaat acttgtcctt agtacgtaga
     7381 acttacataa ttatctatta gataaatatt ttctagaatt tcaattcata tctgtgttgc
     7441 ctcagtctaa aagtaaaaaa aaaaaagttt tctataatta gtatttctgc acagccaagt
     7501 aaagtaacat tgtgattaat tttaaaagga aaaccaagat ctttaaagta gagattaata
     7561 gaactaaatt tatgtaccag cacattaaag ttctatatgc cttcggacaa ccttgccttt
     7621 tgagatgata gtttagccaa agcatagcag ttgcttctgt atgcagtgag agagaagcag
     7681 gttcgcagag gaagttttga gtaacgaaaa tctacatgac ctctttgtca tgaagtaaat
     7741 cagcttctaa aggtggtgta gctttagatc ccaaacttgc cacataccca gtaaggcttc
     7801 acatagccag ttaacaatta agtcatcttt acagattcct tcttgaataa aatatgaaga
     7861 attgttccaa atagtctttt aagtttgtca acaattaact gaagtatccc ataagaagag
     7921 aatttggttg gtattccttt gaaattcttg cctgatacct cagtgtaaaa gtccagtcag
     7981 ggagtattaa atgaggattt ccctatgagg gcattgactg tattgctcca taacttaaat
     8041 tatgggagac atatatctcc aactttctga attagtaaaa cttattcaga aaactgtcat
     8101 cccagaaaca ggaattctta ttcaattggc ttgacttcag ggaaactgaa acataagtta
     8161 cattatatgt atacttaagt tctgtatttg ttttctagac tctgtacaga aacttcattt
     8221 tgatactcaa gccaagcctt acatattaag actgtctgtc tctctctctg catgcatttt
     8281 aaagatcgat acagtggaag cgttgtactt ataccttagt tattactgta gtatctgtga
     8341 accgtatcaa acttgcttat ttgacttatg ttatagctgt tgtaatatgg tctgtttttt
     8401 tctattatag tagataattt agttttaaaa tacctaggac ttgagagcag ataacttgtt
     8461 taatatgttt ttccctggta actgttgcta aagggttagg cattgaatat tactgtttgt
     8521 cttcattttt aagttaaaaa tttggttaga gataaaagag gaagaaaagg tcaaaatgag
     8581 tgagagagaa acctcgcagg ttgaaataat gcctaaaaga gtgagctcgc cagactgtgc
     8641 agcaggcact ctttgtattt tgtaacattc actttgggta aatgcttttt cactgttaat
     8701 aaatgtatat cctgcataca
//
LOCUS       XM_032618252            7510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X17, mRNA.
ACCESSION   XM_032618252
VERSION     XM_032618252.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7510
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             566..6889
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X17"
                     /protein_id="XP_032474143.1"
                     /db_xref="GeneID:116746680"
                     /translation="MTQMSVPEQAELEKLKQRINFSDLDQRSIGSDSQGRATAANNKR
                     QLSENRKPFNFLPMQINTNKSKDAAVNPQKREMIGSAQCKELFASALSNDLLQNCQVS
                     EEDGRGEPAMESSQIVSRLVQIRDYITKASSMREDLVEKNERSANVERLTHLIDHLKE
                     QEKSYMKFLQKILARENEEEDVRTIDSAVGSGSVAESTSLNIDVQSEASDTTEASFSL
                     RIRPCIEDKLGNSASQEQVSDIDVTTSPKGKGDRPPQNDRELRPNRKYSRKRGFPSKA
                     RDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDS
                     EKVAGTTPGHHTVPCRQPARSPFHQRVPLRVVTETTGSLSGVSITSELNEELNDLIQR
                     FHNQLRDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEK
                     KQKMDKLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGES
                     NSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDM
                     MTDAVNENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRD
                     GRSVNSNCEINNRSAANIRALNMPPSLADCRYNREQEQGIHVAQGEGEEEEEEEAEDE
                     AVSGASLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGV
                     ISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQREL
                     KQLQEERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEAS
                     TSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSP
                     VAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEE
                     EEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNIS
                     MQRQENLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLL
                     TGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPG
                     SKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDF
                     SQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTP
                     WLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPV
                     DPTTVTKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKNIGYESASMSSTCE
                     PCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSAHARRILQQSNRNAC
                     NEAPETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRAL
                     YALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERE
                     THKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNT
                     NVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDR
                     QIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSIL
                     QDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAA
                     GVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSD
                     VSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQA
                     NTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQ
                     PLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTE
                     SPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGE
                     ILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4892..6790
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacaggat tggggtggcc aacagaagaa
      421 ggcaaataga tcatcagaaa agaataagaa aaagtttggt gtagaaagtg ataaaagggt
      481 aactaatgat atttctccgg agtcatcgcc aggagttgga aggcgaagaa cgaagactcc
      541 acatacattt ccgcatagta gatacatgac gcagatgtct gttcccgagc aggcagaatt
      601 agagaaactt aaacagcgga taaacttcag tgatttagat cagagaagca ttggaagtga
      661 ttctcaaggt agagcaacag ctgctaacaa caaacgtcag cttagtgaaa accgaaagcc
      721 cttcaacttt ttgcctatgc agattaatac taacaagagc aaagatgctg ctgtaaatcc
      781 tcaaaagaga gaaatgattg gatcagcaca atgtaaagag ttgtttgctt ctgctttaag
      841 taatgacctt ttgcaaaact gtcaagtctc tgaagaagat gggagaggag agcctgcaat
      901 ggagagcagc cagattgtaa gcaggcttgt tcagattcgt gactatatta ctaaagctag
      961 ttccatgcgg gaagatcttg tagagaaaaa tgaaagatct gctaatgttg agcgccttac
     1021 tcatctaata gatcacctta aagaacaaga aaagtcatat atgaaatttc tccaaaaaat
     1081 tcttgctaga gaaaatgagg aggaggatgt tcggactata gattcagctg tgggatctgg
     1141 ttctgtagct gagagcacat cgctaaacat agatgtgcag tctgaggctt cagataccac
     1201 ggaggcatct tttagtctga gaattcggcc gtgcattgag gacaaactag ggaattcagc
     1261 ttcacaagaa caggtttcag acattgacgt tacaacaagt ccaaaaggga aaggtgacag
     1321 acctcctcag aatgacaggg aactgaggcc taataggaaa tatagccgaa aacgtggatt
     1381 tccctcaaag gccagagatc ctcagcagga gcctatggaa gagatagaaa atttgaagaa
     1441 acaacacgat ttattaaaaa ggatgttaca gcagcaggag cagctgagag ctctgcaggg
     1501 acgacaagct gctcttcttg ctctgcagca taaggcagag caagctattg ctgtgatgga
     1561 tgattctgaa aaggttgcag ggacaactcc tggtcatcat actgtaccgt gcagacagcc
     1621 agctcgctct ccttttcatc agagagtacc cttaagagtt gtaacagaaa ctacaggtag
     1681 cctatctgga gtcagtatca catctgaact aaatgaagaa ttgaatgatt taattcagcg
     1741 ttttcataat cagcttcgtg attctcagcc tccacctgtt ccagacaata gaagacaagc
     1801 agaaagtctt tcattaacta gggaggtttc tcagagcaga aatccatcag tttcagagca
     1861 tttacctgat gagaaagtcc agctttttag caaaatgaga gtgttacaag aaaagaaaca
     1921 aaaaatggac aagctgcttg gagaacttca tacacttcga gatgagcatt tgaacaattc
     1981 atcctttgtg ccttcttcag cctccccaca aaggagtgtg gatcagagaa gtacaaccgc
     2041 agctccctct gctcctgtag gcttaacacc agttgtcaat ggagaatcca atagcctcac
     2101 atcatctgtt ccttatcctg ctgcttctct agtttctcag aatcagagtg aaaatgaagg
     2161 ccacctaaat ccaactgaaa aactccagaa gttaaatgaa gttcgaaaga ggttgaatga
     2221 gctaagagag ttagttcatt attacgagca aacatcagat atgatgacag atgctgtaaa
     2281 tgaaaacaca aaagaagaag aaactgaaga gtcagaatat gattccgagc atgaaaattc
     2341 tgaacctgtt actaacattc gaaatccaca agtagctgcc acctggaatg aagtaaatag
     2401 taattctaag gcacagtgtg tttctaataa tagagatggg agatcagtta attctaattg
     2461 tgaaattaac aacagatctg ctgccaacat aagggctcta aacatgcctc cttctttagc
     2521 agattgtcga tacaatagag aacaagaaca ggggattcac gttgcacaag gtgaaggtga
     2581 ggaggaggaa gaggaagaag cagaagatga ggcagtcagt ggagcgtcat tatctagtca
     2641 tcggagcagt ctggttgatg agacgcctga agatgctgaa tttgaacaga agatcagcag
     2701 acttatggct gcaaaacaga aacttagaca gttacaagat cttgttgcat tggtgcagga
     2761 tgatgataca gcagatcaag gagttatctc tgccaatacc tcaaatttgg atgatttcta
     2821 cccagcagaa gaagacacca aacaaaatgc aaataacact agaggaaata ccaataaaac
     2881 acagaaagat gctggagtaa atgaaaaggc aagagagaaa ttttatgagg ctaaactaca
     2941 gcagcaacag agagagctca aacaattgca ggaagaaaga aagaaactga ttgagattca
     3001 agagaaaatt caagcattgc aaaaggcatg tcctgaccta cagctgtcag ccactagtgc
     3061 aggtaattgt cccacaaaaa aatatatgcc agctgttact tcaaccccaa ctgttaatga
     3121 aaatgaagcc agtacaagca gatctgcttt tgaacctgat gatccttcag tggtagataa
     3181 tgagttgtgg tcagaaatgc gaagacacga aatgttaagg gaagagctgc gacagagaag
     3241 aaagcagctt gaagctttga tggctgaaca tcagaggagg caaggtctgg ctgaaactac
     3301 atctccagtg gctgtttcac tgagaagtga tgggtctgag aacctgtgta cgcctcaaca
     3361 gagtagaaca gaaaaaacaa tggcaacttg gggaggttct atccagtgtg cactagatgg
     3421 agaaggagat gaagatggtt acctttctga agcagttgtt cggacagatg aagacgagga
     3481 ggaggaggag caagacgccg gctcccatga tagcttttcc gtgtgtcctc ctagcagcgc
     3541 aaatcataac tcctataatg taaaggaaac taaaaatagg tggaagaaca atcgcccttt
     3601 ttcagcagat ggaaattatc gtcctttagc caggacaaga caacagaata tcagcatgca
     3661 gcgtcaggaa aaccttcgct gggtgtcaga actctcttat gtagaagaga aagaacagtg
     3721 gcaagaacaa atcaatcagc taaagaaaca acttgatttc agtgtcagta tttgtcagac
     3781 tttgatgcaa gaccagcaga ctctgtcttg tctgctacaa actcttctca cgggccctta
     3841 cagtgttatg cccagcaatg ttgcatctcc tcaagtacac cttataatgc accagttgaa
     3901 ccagtgctac acccagctaa catggcaaca gaataatgta caaaggttga agcaaacgct
     3961 aaatgaactt atgcgccaac aaaatcatcc agaaaaacct ggaagcaagg aaagagtcag
     4021 tagtgcatca caccctcctt ctcccagttt attttgtcct ttcagctttc cagcacagcc
     4081 tgtaaatctg ttcaacctac cggggtttac taatttttca tcatttgcac caggtatgaa
     4141 tttcagccct ttatttcctt ctaattttgg agatttttct caaaatattt ctacacccac
     4201 tgaacagcag caaccattag cccagaatct ttcagggaaa acagaataca tggcttttcc
     4261 aaaacctttt gaaagtagtt cttctgttgg agcagaaaaa caaaggaatc aaaaacagcc
     4321 cgaagaggag gtggagaaca gtaggacacc atggttatat gaccaagaag gtgaagtaga
     4381 aaaaccattt ctcaagactg gatgtgcagt gtctgtaaag aaaacaacaa atagtaatcg
     4441 caaaaatcaa ttagatacca gtaggagaag acgccaattt gatgaagagt cgttagaaag
     4501 ctttagcagt atgcctgacc cagtagatcc aacaacagta actaaaacat tcaagtcaag
     4561 aaaagcatct gcacaggcca gcctggcatc taaagataaa actcccaaat caaagagtaa
     4621 gaagaggcat tctactcagc tgaaaagcag agttaaaaat attgggtatg aaagtgccag
     4681 tatgtctagc acatgtgaac cttgcaaaag taggaacaga cattcagccc agactgaaga
     4741 gcctgttcaa gcaaaagtat tcagcagaaa gaatcatgag cagctggaaa aagtactaag
     4801 atatagtagg tctacagaaa tgtcttcagc acatgctagg agaatactac agcaatctaa
     4861 cagaaatgca tgcaatgaag cgccagaaac cgggagtgat ttttccatgt ttgaagcttt
     4921 gcgggatacc atttattctg aagtagctac gttgatttct caaaatgaat ctcgtccaca
     4981 ttttcttatt gaactcttcc atgaacttca gctactgaat acagactatt tgagacagag
     5041 ggctttatat gccttgcagg acatagtatc cagacatatt tctgagaacc atgaaaaaga
     5101 aggggaaaac gtaaagtcag tgaattctgg tacttggata gcatcaaact cagaacttac
     5161 tcccagtgaa agccttgcta ctactgatga tgaaactttt gagaagaact ttgagagaga
     5221 aacacataaa ataagtgagc aaaatgatgc tgataatgct agtgtcacgt ctgtatcttc
     5281 aaattttgag ccttttgcaa cagatgatct gggtaacact gtgattcact tagatcaagc
     5341 attagccaga atgagagaat atgagcgtat gaagactgag actgaaagta acacaaatgt
     5401 cagatgcacc tgcaggatta tagaggatga ggatggtgct gctgccccga ctacggttga
     5461 tagtttagaa gtggaaactc ctattattga aaatcatagt tcacagcaat ctgtaagtga
     5521 agtttctacc gtcccatgtc ctagaattga tacacagcaa ctggaccggc aaattaaagc
     5581 aattatgaaa gaagtcattc cctttttgaa ggagcacatg gatgaagtat gctcttctca
     5641 acttctaacc tcagtaagac gcatggtttt gactcttacc cagcaaaacg atgagagcaa
     5701 agagtttgta aagttctttc ataaacaact tggaagtata ttacaggatt cactggcaaa
     5761 atttgctggc agaaaactga aagattgtgg agaagatctt cttgtagaga tatctgaagt
     5821 gttatttaat gaattggctt tctttaaact catgcaagat ttggataata atagtataac
     5881 tgttaaacag agatgcaaaa ggaaaattga agcagctgga gtgatacagt cttacgcaaa
     5941 agaggccaaa aggattcttg aaggagatca tggctcacct gctggagaaa ttgatgatga
     6001 agacaaagat aaggatgaga ctgaaacagt taaacagagt caaacatctg aggtttatga
     6061 tggtgacggt cccaaaaatg tgagctctga tgtctctgat caagaggaag atgaagaaag
     6121 tgaagaatgt ccagtgtcta ttaatttgtc caaagctgaa actcaggctt tgactaatta
     6181 tggaagtgga gaagatgaga atgaagatga agaaatagaa gaatttgaag agggacctgt
     6241 agatgtccag acttcactgc aggctaacac tgaaactaca gaagaaaatg aacatgacga
     6301 tcaggttcca cagcatgatt ttgaaaaatc agcggaaagc aaaaatgtcc catcagaaca
     6361 agaacccact actagtaaag atgaccaaga tagcactcct gtgaagccct gttacctcaa
     6421 tatcttggaa aatgagcaac ctttaaacag cactgtccaa aaggacgctc ttactaccat
     6481 cgattcatct aatcagccta acgctttgcc tttaccttta actgaaattg aaaccttggt
     6541 gcctagagtc aaagaagtta aatccgccca ggaaactcct gaaagctctt tggctggaag
     6601 tcctgatact gaatctccag tgttagtgaa tgactatgaa gcagaatctg gtaacataag
     6661 tcaaaaatct gatgaagaag actttgtgaa agttgaagat ttaccactta aactgacaat
     6721 atattcagag gcagatctaa ggaagaaaat ggtagaagaa gaacagaaaa accatttatc
     6781 tggtgaaata ttacgtgaaa tgcagactga agaactagct gggaattctc agacactaaa
     6841 agaacctgag ccaagttata gtcccagatt tccttcttta tgggtctaat agcacaaccc
     6901 aagggccact cggaggagca catttcttgc atcaaggtca aagattttct ttttgttcat
     6961 caattcatca gctgattaaa ctcatataag attttttgtt ttttttaaga aatagggtga
     7021 agagaagtgc aaaccaaatg tcaaaccttc agttaattcc tcactcttca gcccatttct
     7081 gcctgttagg actcagttgg taccctctgc actgccgcct gtcctagtgt gtctaggctg
     7141 cagcttcctc ccctcttctc tgtgcctcca tctcctttga gcatcctggg aacttgttgt
     7201 ggttcgccat cctctgttct ctcacagcca ctcttcttct gttctgggtt tattcatttt
     7261 tatacttctt ttcttttttt tttctagtgg ggctttcttt tggagagaga ggaagtatct
     7321 gcttagtctg ccgtcttaaa atggaaaccc ttacctgtgc cttttaaact cttgctgtgt
     7381 gttaccaggg aattattgta gcaaactaag tttcttttgt aataacttta tattagaaat
     7441 gaaagtttta atggaagaga gcagtattaa actaaattct ataaggtctt aacttagtaa
     7501 gtaatttata
//
LOCUS       XM_032618253            7359 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X18, mRNA.
ACCESSION   XM_032618253
VERSION     XM_032618253.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7359
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7359
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             430..6738
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X18"
                     /protein_id="XP_032474144.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSITSELNEELNDLIQRFHNQL
                     RDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMD
                     KLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTS
                     SVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAV
                     NENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVN
                     SNCEINNRSAANIRALNMPPSLADCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGA
                     SLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGVISANT
                     SNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQE
                     ERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSA
                     FEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSPVAVSL
                     RSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQD
                     AGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQE
                     NLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYS
                     VMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERV
                     SSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNIS
                     TPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQ
                     EGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTV
                     TKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSR
                     NRHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSAHARRILQQSNRNACNEAPE
                     TGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQD
                     IVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHKIS
                     EQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCT
                     CRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAI
                     MKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLA
                     KFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQS
                     YAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQE
                     EDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETT
                     EENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNST
                     VQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLV
                     NDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREM
                     QTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4741..6639
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 ctccagtcta gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc
       61 ggccgttgcc gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc
      121 gcccctcttc tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc
      181 gagtaggtga tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact
      241 ctccctgctg tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg
      301 ctactccgcc cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa
      361 acaggaaagg agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata
      421 aaagccagta tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta
      481 ccaaactgga gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa
      541 cagaagaagg caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat
      601 aaaagggtaa ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg
      661 aagactccac atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag
      721 gcagaattag agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt
      781 ggaagtgatt ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac
      841 cgaaagccct tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct
      901 gtaaatcctc aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct
      961 gctttaagta atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag
     1021 cctgcaatgg agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact
     1081 aaagctagtt ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag
     1141 cgccttactc atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc
     1201 caaaaaattc ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg
     1261 ggatctggtt ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca
     1321 gataccacgg ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa
     1381 caacacgatt tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga
     1441 cgacaagctg ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat
     1501 gattctgttg taacagaaac tacaggtagc ctatctggag tcagtatcac atctgaacta
     1561 aatgaagaat tgaatgattt aattcagcgt tttcataatc agcttcgtga ttctcagcct
     1621 ccacctgttc cagacaatag aagacaagca gaaagtcttt cattaactag ggaggtttct
     1681 cagagcagaa atccatcagt ttcagagcat ttacctgatg agaaagtcca gctttttagc
     1741 aaaatgagag tgttacaaga aaagaaacaa aaaatggaca agctgcttgg agaacttcat
     1801 acacttcgag atgagcattt gaacaattca tcctttgtgc cttcttcagc ctccccacaa
     1861 aggagtgtgg atcagagaag tacaaccgca gctccctctg ctcctgtagg cttaacacca
     1921 gttgtcaatg gagaatccaa tagcctcaca tcatctgttc cttatcctgc tgcttctcta
     1981 gtttctcaga atcagagtga aaatgaaggc cacctaaatc caactgaaaa actccagaag
     2041 ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt tagttcatta ttacgagcaa
     2101 acatcagata tgatgacaga tgctgtaaat gaaaacacaa aagaagaaga aactgaagag
     2161 tcagaatatg attccgagca tgaaaattct gaacctgtta ctaacattcg aaatccacaa
     2221 gtagctgcca cctggaatga agtaaatagt aattctaagg cacagtgtgt ttctaataat
     2281 agagatggga gatcagttaa ttctaattgt gaaattaaca acagatctgc tgccaacata
     2341 agggctctaa acatgcctcc ttctttagca gattgtcgat acaatagaga acaagaacag
     2401 gggattcacg ttgcacaagg tgaaggtgag gaggaggaag aggaagaagc agaagatgag
     2461 gcagtcagtg gagcgtcatt atctagtcat cggagcagtc tggttgatga gacgcctgaa
     2521 gatgctgaat ttgaacagaa gatcagcaga cttatggctg caaaacagaa acttagacag
     2581 ttacaagatc ttgttgcatt ggtgcaggat gatgatacag cagatcaagg agttatctct
     2641 gccaatacct caaatttgga tgatttctac ccagcagaag aagacaccaa acaaaatgca
     2701 aataacacta gaggaaatac caataaaaca cagaaagatg ctggagtaaa tgaaaaggca
     2761 agagagaaat tttatgaggc taaactacag cagcaacaga gagagctcaa acaattgcag
     2821 gaagaaagaa agaaactgat tgagattcaa gagaaaattc aagcattgca aaaggcatgt
     2881 cctgacctac agctgtcagc cactagtgca ggtaattgtc ccacaaaaaa atatatgcca
     2941 gctgttactt caaccccaac tgttaatgaa aatgaagcca gtacaagcag atctgctttt
     3001 gaacctgatg atccttcagt ggtagataat gagttgtggt cagaaatgcg aagacacgaa
     3061 atgttaaggg aagagctgcg acagagaaga aagcagcttg aagctttgat ggctgaacat
     3121 cagaggaggc aaggtctggc tgaaactaca tctccagtgg ctgtttcact gagaagtgat
     3181 gggtctgaga acctgtgtac gcctcaacag agtagaacag aaaaaacaat ggcaacttgg
     3241 ggaggttcta tccagtgtgc actagatgga gaaggagatg aagatggtta cctttctgaa
     3301 gcagttgttc ggacagatga agacgaggag gaggaggagc aagacgccgg ctcccatgat
     3361 agcttttccg tgtgtcctcc tagcagcgca aatcataact cctataatgt aaaggaaact
     3421 aaaaataggt ggaagaacaa tcgccctttt tcagcagatg gaaattatcg tcctttagcc
     3481 aggacaagac aacagaatat cagcatgcag cgtcaggaaa accttcgctg ggtgtcagaa
     3541 ctctcttatg tagaagagaa agaacagtgg caagaacaaa tcaatcagct aaagaaacaa
     3601 cttgatttca gtgtcagtat ttgtcagact ttgatgcaag accagcagac tctgtcttgt
     3661 ctgctacaaa ctcttctcac gggcccttac agtgttatgc ccagcaatgt tgcatctcct
     3721 caagtacacc ttataatgca ccagttgaac cagtgctaca cccagctaac atggcaacag
     3781 aataatgtac aaaggttgaa gcaaacgcta aatgaactta tgcgccaaca aaatcatcca
     3841 gaaaaacctg gaagcaagga aagagtcagt agtgcatcac accctccttc tcccagttta
     3901 ttttgtcctt tcagctttcc agcacagcct gtaaatctgt tcaacctacc ggggtttact
     3961 aatttttcat catttgcacc aggtatgaat ttcagccctt tatttccttc taattttgga
     4021 gatttttctc aaaatatttc tacacccact gaacagcagc aaccattagc ccagaatctt
     4081 tcagggaaaa cagaatacat ggcttttcca aaaccttttg aaagtagttc ttctgttgga
     4141 gcagaaaaac aaaggaatca aaaacagccc gaagaggagg tggagaacag taggacacca
     4201 tggttatatg accaagaagg tgaagtagaa aaaccatttc tcaagactgg atgtgcagtg
     4261 tctgtaaaga aaacaacaaa tagtaatcgc aaaaatcaat tagataccag taggagaaga
     4321 cgccaatttg atgaagagtc gttagaaagc tttagcagta tgcctgaccc agtagatcca
     4381 acaacagtaa ctaaaacatt caagtcaaga aaagcatctg cacaggccag cctggcatct
     4441 aaagataaaa ctcccaaatc aaagagtaag aagaggcatt ctactcagct gaaaagcaga
     4501 gttaaaaata ttgggtatga aagtgccagt atgtctagca catgtgaacc ttgcaaaagt
     4561 aggaacagac attcagccca gactgaagag cctgttcaag caaaagtatt cagcagaaag
     4621 aatcatgagc agctggaaaa agtactaaga tatagtaggt ctacagaaat gtcttcagca
     4681 catgctagga gaatactaca gcaatctaac agaaatgcat gcaatgaagc gccagaaacc
     4741 gggagtgatt tttccatgtt tgaagctttg cgggatacca tttattctga agtagctacg
     4801 ttgatttctc aaaatgaatc tcgtccacat tttcttattg aactcttcca tgaacttcag
     4861 ctactgaata cagactattt gagacagagg gctttatatg ccttgcagga catagtatcc
     4921 agacatattt ctgagaacca tgaaaaagaa ggggaaaacg taaagtcagt gaattctggt
     4981 acttggatag catcaaactc agaacttact cccagtgaaa gccttgctac tactgatgat
     5041 gaaacttttg agaagaactt tgagagagaa acacataaaa taagtgagca aaatgatgct
     5101 gataatgcta gtgtcacgtc tgtatcttca aattttgagc cttttgcaac agatgatctg
     5161 ggtaacactg tgattcactt agatcaagca ttagccagaa tgagagaata tgagcgtatg
     5221 aagactgaga ctgaaagtaa cacaaatgtc agatgcacct gcaggattat agaggatgag
     5281 gatggtgctg ctgccccgac tacggttgat agtttagaag tggaaactcc tattattgaa
     5341 aatcatagtt cacagcaatc tgtaagtgaa gtttctaccg tcccatgtcc tagaattgat
     5401 acacagcaac tggaccggca aattaaagca attatgaaag aagtcattcc ctttttgaag
     5461 gagcacatgg atgaagtatg ctcttctcaa cttctaacct cagtaagacg catggttttg
     5521 actcttaccc agcaaaacga tgagagcaaa gagtttgtaa agttctttca taaacaactt
     5581 ggaagtatat tacaggattc actggcaaaa tttgctggca gaaaactgaa agattgtgga
     5641 gaagatcttc ttgtagagat atctgaagtg ttatttaatg aattggcttt ctttaaactc
     5701 atgcaagatt tggataataa tagtataact gttaaacaga gatgcaaaag gaaaattgaa
     5761 gcagctggag tgatacagtc ttacgcaaaa gaggccaaaa ggattcttga aggagatcat
     5821 ggctcacctg ctggagaaat tgatgatgaa gacaaagata aggatgagac tgaaacagtt
     5881 aaacagagtc aaacatctga ggtttatgat ggtgacggtc ccaaaaatgt gagctctgat
     5941 gtctctgatc aagaggaaga tgaagaaagt gaagaatgtc cagtgtctat taatttgtcc
     6001 aaagctgaaa ctcaggcttt gactaattat ggaagtggag aagatgagaa tgaagatgaa
     6061 gaaatagaag aatttgaaga gggacctgta gatgtccaga cttcactgca ggctaacact
     6121 gaaactacag aagaaaatga acatgacgat caggttccac agcatgattt tgaaaaatca
     6181 gcggaaagca aaaatgtccc atcagaacaa gaacccacta ctagtaaaga tgaccaagat
     6241 agcactcctg tgaagccctg ttacctcaat atcttggaaa atgagcaacc tttaaacagc
     6301 actgtccaaa aggacgctct tactaccatc gattcatcta atcagcctaa cgctttgcct
     6361 ttacctttaa ctgaaattga aaccttggtg cctagagtca aagaagttaa atccgcccag
     6421 gaaactcctg aaagctcttt ggctggaagt cctgatactg aatctccagt gttagtgaat
     6481 gactatgaag cagaatctgg taacataagt caaaaatctg atgaagaaga ctttgtgaaa
     6541 gttgaagatt taccacttaa actgacaata tattcagagg cagatctaag gaagaaaatg
     6601 gtagaagaag aacagaaaaa ccatttatct ggtgaaatat tacgtgaaat gcagactgaa
     6661 gaactagctg ggaattctca gacactaaaa gaacctgagc caagttatag tcccagattt
     6721 ccttctttat gggtctaata gcacaaccca agggccactc ggaggagcac atttcttgca
     6781 tcaaggtcaa agattttctt tttgttcatc aattcatcag ctgattaaac tcatataaga
     6841 ttttttgttt tttttaagaa atagggtgaa gagaagtgca aaccaaatgt caaaccttca
     6901 gttaattcct cactcttcag cccatttctg cctgttagga ctcagttggt accctctgca
     6961 ctgccgcctg tcctagtgtg tctaggctgc agcttcctcc cctcttctct gtgcctccat
     7021 ctcctttgag catcctggga acttgttgtg gttcgccatc ctctgttctc tcacagccac
     7081 tcttcttctg ttctgggttt attcattttt atacttcttt tctttttttt ttctagtggg
     7141 gctttctttt ggagagagag gaagtatctg cttagtctgc cgtcttaaaa tggaaaccct
     7201 tacctgtgcc ttttaaactc ttgctgtgtg ttaccaggga attattgtag caaactaagt
     7261 ttcttttgta ataactttat attagaaatg aaagttttaa tggaagagag cagtattaaa
     7321 ctaaattcta taaggtctta acttagtaag taatttata
//
LOCUS       XM_032618254            7356 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X19, mRNA.
ACCESSION   XM_032618254
VERSION     XM_032618254.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7356
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7356
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             430..6735
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X19"
                     /protein_id="XP_032474145.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSITSELNEELNDLIQRFHNQL
                     RDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMD
                     KLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTS
                     SVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAV
                     NENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVN
                     SNCEINNRSAANIRALNMPPSLDCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGAS
                     LSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTS
                     NLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEE
                     RKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAF
                     EPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLR
                     SDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDA
                     GSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQEN
                     LRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSV
                     MPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVS
                     SASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNIST
                     PTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQE
                     GEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVT
                     KTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRN
                     RHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSAHARRILQQSNRNACNEAPET
                     GSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDI
                     VSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHKISE
                     QNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTC
                     RIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIM
                     KEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAK
                     FAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSY
                     AKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEE
                     DEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTE
                     ENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTV
                     QKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVN
                     DYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQ
                     TEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4738..6636
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 ctccagtcta gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc
       61 ggccgttgcc gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc
      121 gcccctcttc tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc
      181 gagtaggtga tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact
      241 ctccctgctg tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg
      301 ctactccgcc cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa
      361 acaggaaagg agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata
      421 aaagccagta tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta
      481 ccaaactgga gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa
      541 cagaagaagg caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat
      601 aaaagggtaa ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg
      661 aagactccac atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag
      721 gcagaattag agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt
      781 ggaagtgatt ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac
      841 cgaaagccct tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct
      901 gtaaatcctc aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct
      961 gctttaagta atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag
     1021 cctgcaatgg agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact
     1081 aaagctagtt ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag
     1141 cgccttactc atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc
     1201 caaaaaattc ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg
     1261 ggatctggtt ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca
     1321 gataccacgg ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa
     1381 caacacgatt tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga
     1441 cgacaagctg ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat
     1501 gattctgttg taacagaaac tacaggtagc ctatctggag tcagtatcac atctgaacta
     1561 aatgaagaat tgaatgattt aattcagcgt tttcataatc agcttcgtga ttctcagcct
     1621 ccacctgttc cagacaatag aagacaagca gaaagtcttt cattaactag ggaggtttct
     1681 cagagcagaa atccatcagt ttcagagcat ttacctgatg agaaagtcca gctttttagc
     1741 aaaatgagag tgttacaaga aaagaaacaa aaaatggaca agctgcttgg agaacttcat
     1801 acacttcgag atgagcattt gaacaattca tcctttgtgc cttcttcagc ctccccacaa
     1861 aggagtgtgg atcagagaag tacaaccgca gctccctctg ctcctgtagg cttaacacca
     1921 gttgtcaatg gagaatccaa tagcctcaca tcatctgttc cttatcctgc tgcttctcta
     1981 gtttctcaga atcagagtga aaatgaaggc cacctaaatc caactgaaaa actccagaag
     2041 ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt tagttcatta ttacgagcaa
     2101 acatcagata tgatgacaga tgctgtaaat gaaaacacaa aagaagaaga aactgaagag
     2161 tcagaatatg attccgagca tgaaaattct gaacctgtta ctaacattcg aaatccacaa
     2221 gtagctgcca cctggaatga agtaaatagt aattctaagg cacagtgtgt ttctaataat
     2281 agagatggga gatcagttaa ttctaattgt gaaattaaca acagatctgc tgccaacata
     2341 agggctctaa acatgcctcc ttctttagat tgtcgataca atagagaaca agaacagggg
     2401 attcacgttg cacaaggtga aggtgaggag gaggaagagg aagaagcaga agatgaggca
     2461 gtcagtggag cgtcattatc tagtcatcgg agcagtctgg ttgatgagac gcctgaagat
     2521 gctgaatttg aacagaagat cagcagactt atggctgcaa aacagaaact tagacagtta
     2581 caagatcttg ttgcattggt gcaggatgat gatacagcag atcaaggagt tatctctgcc
     2641 aatacctcaa atttggatga tttctaccca gcagaagaag acaccaaaca aaatgcaaat
     2701 aacactagag gaaataccaa taaaacacag aaagatgctg gagtaaatga aaaggcaaga
     2761 gagaaatttt atgaggctaa actacagcag caacagagag agctcaaaca attgcaggaa
     2821 gaaagaaaga aactgattga gattcaagag aaaattcaag cattgcaaaa ggcatgtcct
     2881 gacctacagc tgtcagccac tagtgcaggt aattgtccca caaaaaaata tatgccagct
     2941 gttacttcaa ccccaactgt taatgaaaat gaagccagta caagcagatc tgcttttgaa
     3001 cctgatgatc cttcagtggt agataatgag ttgtggtcag aaatgcgaag acacgaaatg
     3061 ttaagggaag agctgcgaca gagaagaaag cagcttgaag ctttgatggc tgaacatcag
     3121 aggaggcaag gtctggctga aactacatct ccagtggctg tttcactgag aagtgatggg
     3181 tctgagaacc tgtgtacgcc tcaacagagt agaacagaaa aaacaatggc aacttgggga
     3241 ggttctatcc agtgtgcact agatggagaa ggagatgaag atggttacct ttctgaagca
     3301 gttgttcgga cagatgaaga cgaggaggag gaggagcaag acgccggctc ccatgatagc
     3361 ttttccgtgt gtcctcctag cagcgcaaat cataactcct ataatgtaaa ggaaactaaa
     3421 aataggtgga agaacaatcg ccctttttca gcagatggaa attatcgtcc tttagccagg
     3481 acaagacaac agaatatcag catgcagcgt caggaaaacc ttcgctgggt gtcagaactc
     3541 tcttatgtag aagagaaaga acagtggcaa gaacaaatca atcagctaaa gaaacaactt
     3601 gatttcagtg tcagtatttg tcagactttg atgcaagacc agcagactct gtcttgtctg
     3661 ctacaaactc ttctcacggg cccttacagt gttatgccca gcaatgttgc atctcctcaa
     3721 gtacacctta taatgcacca gttgaaccag tgctacaccc agctaacatg gcaacagaat
     3781 aatgtacaaa ggttgaagca aacgctaaat gaacttatgc gccaacaaaa tcatccagaa
     3841 aaacctggaa gcaaggaaag agtcagtagt gcatcacacc ctccttctcc cagtttattt
     3901 tgtcctttca gctttccagc acagcctgta aatctgttca acctaccggg gtttactaat
     3961 ttttcatcat ttgcaccagg tatgaatttc agccctttat ttccttctaa ttttggagat
     4021 ttttctcaaa atatttctac acccactgaa cagcagcaac cattagccca gaatctttca
     4081 gggaaaacag aatacatggc ttttccaaaa ccttttgaaa gtagttcttc tgttggagca
     4141 gaaaaacaaa ggaatcaaaa acagcccgaa gaggaggtgg agaacagtag gacaccatgg
     4201 ttatatgacc aagaaggtga agtagaaaaa ccatttctca agactggatg tgcagtgtct
     4261 gtaaagaaaa caacaaatag taatcgcaaa aatcaattag ataccagtag gagaagacgc
     4321 caatttgatg aagagtcgtt agaaagcttt agcagtatgc ctgacccagt agatccaaca
     4381 acagtaacta aaacattcaa gtcaagaaaa gcatctgcac aggccagcct ggcatctaaa
     4441 gataaaactc ccaaatcaaa gagtaagaag aggcattcta ctcagctgaa aagcagagtt
     4501 aaaaatattg ggtatgaaag tgccagtatg tctagcacat gtgaaccttg caaaagtagg
     4561 aacagacatt cagcccagac tgaagagcct gttcaagcaa aagtattcag cagaaagaat
     4621 catgagcagc tggaaaaagt actaagatat agtaggtcta cagaaatgtc ttcagcacat
     4681 gctaggagaa tactacagca atctaacaga aatgcatgca atgaagcgcc agaaaccggg
     4741 agtgattttt ccatgtttga agctttgcgg gataccattt attctgaagt agctacgttg
     4801 atttctcaaa atgaatctcg tccacatttt cttattgaac tcttccatga acttcagcta
     4861 ctgaatacag actatttgag acagagggct ttatatgcct tgcaggacat agtatccaga
     4921 catatttctg agaaccatga aaaagaaggg gaaaacgtaa agtcagtgaa ttctggtact
     4981 tggatagcat caaactcaga acttactccc agtgaaagcc ttgctactac tgatgatgaa
     5041 acttttgaga agaactttga gagagaaaca cataaaataa gtgagcaaaa tgatgctgat
     5101 aatgctagtg tcacgtctgt atcttcaaat tttgagcctt ttgcaacaga tgatctgggt
     5161 aacactgtga ttcacttaga tcaagcatta gccagaatga gagaatatga gcgtatgaag
     5221 actgagactg aaagtaacac aaatgtcaga tgcacctgca ggattataga ggatgaggat
     5281 ggtgctgctg ccccgactac ggttgatagt ttagaagtgg aaactcctat tattgaaaat
     5341 catagttcac agcaatctgt aagtgaagtt tctaccgtcc catgtcctag aattgataca
     5401 cagcaactgg accggcaaat taaagcaatt atgaaagaag tcattccctt tttgaaggag
     5461 cacatggatg aagtatgctc ttctcaactt ctaacctcag taagacgcat ggttttgact
     5521 cttacccagc aaaacgatga gagcaaagag tttgtaaagt tctttcataa acaacttgga
     5581 agtatattac aggattcact ggcaaaattt gctggcagaa aactgaaaga ttgtggagaa
     5641 gatcttcttg tagagatatc tgaagtgtta tttaatgaat tggctttctt taaactcatg
     5701 caagatttgg ataataatag tataactgtt aaacagagat gcaaaaggaa aattgaagca
     5761 gctggagtga tacagtctta cgcaaaagag gccaaaagga ttcttgaagg agatcatggc
     5821 tcacctgctg gagaaattga tgatgaagac aaagataagg atgagactga aacagttaaa
     5881 cagagtcaaa catctgaggt ttatgatggt gacggtccca aaaatgtgag ctctgatgtc
     5941 tctgatcaag aggaagatga agaaagtgaa gaatgtccag tgtctattaa tttgtccaaa
     6001 gctgaaactc aggctttgac taattatgga agtggagaag atgagaatga agatgaagaa
     6061 atagaagaat ttgaagaggg acctgtagat gtccagactt cactgcaggc taacactgaa
     6121 actacagaag aaaatgaaca tgacgatcag gttccacagc atgattttga aaaatcagcg
     6181 gaaagcaaaa atgtcccatc agaacaagaa cccactacta gtaaagatga ccaagatagc
     6241 actcctgtga agccctgtta cctcaatatc ttggaaaatg agcaaccttt aaacagcact
     6301 gtccaaaagg acgctcttac taccatcgat tcatctaatc agcctaacgc tttgccttta
     6361 cctttaactg aaattgaaac cttggtgcct agagtcaaag aagttaaatc cgcccaggaa
     6421 actcctgaaa gctctttggc tggaagtcct gatactgaat ctccagtgtt agtgaatgac
     6481 tatgaagcag aatctggtaa cataagtcaa aaatctgatg aagaagactt tgtgaaagtt
     6541 gaagatttac cacttaaact gacaatatat tcagaggcag atctaaggaa gaaaatggta
     6601 gaagaagaac agaaaaacca tttatctggt gaaatattac gtgaaatgca gactgaagaa
     6661 ctagctggga attctcagac actaaaagaa cctgagccaa gttatagtcc cagatttcct
     6721 tctttatggg tctaatagca caacccaagg gccactcgga ggagcacatt tcttgcatca
     6781 aggtcaaaga ttttcttttt gttcatcaat tcatcagctg attaaactca tataagattt
     6841 tttgtttttt ttaagaaata gggtgaagag aagtgcaaac caaatgtcaa accttcagtt
     6901 aattcctcac tcttcagccc atttctgcct gttaggactc agttggtacc ctctgcactg
     6961 ccgcctgtcc tagtgtgtct aggctgcagc ttcctcccct cttctctgtg cctccatctc
     7021 ctttgagcat cctgggaact tgttgtggtt cgccatcctc tgttctctca cagccactct
     7081 tcttctgttc tgggtttatt catttttata cttcttttct tttttttttc tagtggggct
     7141 ttcttttgga gagagaggaa gtatctgctt agtctgccgt cttaaaatgg aaacccttac
     7201 ctgtgccttt taaactcttg ctgtgtgtta ccagggaatt attgtagcaa actaagtttc
     7261 ttttgtaata actttatatt agaaatgaaa gttttaatgg aagagagcag tattaaacta
     7321 aattctataa ggtcttaact tagtaagtaa tttata
//
LOCUS       XM_032618255            7322 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X20, mRNA.
ACCESSION   XM_032618255
VERSION     XM_032618255.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7322
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7322
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6701
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X20"
                     /protein_id="XP_032474146.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARDPQQEPMEEIENL
                     KKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVP
                     CRQPARSPFHQRVPLRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVP
                     DNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTL
                     RDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASL
                     VSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEET
                     EESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRS
                     AANIRALNMPPSLADCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSL
                     VDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPA
                     EEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQ
                     EKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVV
                     DNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLC
                     TPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSV
                     CPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELS
                     YVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASP
                     QVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSP
                     SLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPL
                     AQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFL
                     KTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKA
                     SAQASLASKDKTPKSKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEE
                     PVQAKVFSRKNHEQLEKVLRYSRSTEMSSAHARRILQQSNRNACNEAPETGSDFSMFE
                     ALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISEN
                     HEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNAS
                     VTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDG
                     AAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLK
                     EHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKD
                     CGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRIL
                     EGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECP
                     VSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQV
                     PQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTI
                     DSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGN
                     ISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNS
                     QTLKEPEPSYSPRFPSLWV"
     misc_feature    4704..6602
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgccagaga tcctcagcag gagcctatgg aagagataga aaatttgaag aaacaacacg
     1261 atttattaaa aaggatgtta cagcagcagg agcagctgag agctctgcag ggacgacaag
     1321 ctgctcttct tgctctgcag cataaggcag agcaagctat tgctgtgatg gatgattctg
     1381 aaaaggttgc agggacaact cctggtcatc atactgtacc gtgcagacag ccagctcgct
     1441 ctccttttca tcagagagta cccttaagag ttgtaacaga aactacaggt agcctatctg
     1501 gagtcagtat cacatctgaa ctaaatgaag aattgaatga tttaattcag cgttttcata
     1561 atcagcttcg tgattctcag cctccacctg ttccagacaa tagaagacaa gcagaaagtc
     1621 tttcattaac tagggaggtt tctcagagca gaaatccatc agtttcagag catttacctg
     1681 atgagaaagt ccagcttttt agcaaaatga gagtgttaca agaaaagaaa caaaaaatgg
     1741 acaagctgct tggagaactt catacacttc gagatgagca tttgaacaat tcatcctttg
     1801 tgccttcttc agcctcccca caaaggagtg tggatcagag aagtacaacc gcagctccct
     1861 ctgctcctgt aggcttaaca ccagttgtca atggagaatc caatagcctc acatcatctg
     1921 ttccttatcc tgctgcttct ctagtttctc agaatcagag tgaaaatgaa ggccacctaa
     1981 atccaactga aaaactccag aagttaaatg aagttcgaaa gaggttgaat gagctaagag
     2041 agttagttca ttattacgag caaacatcag atatgatgac agatgctgta aatgaaaaca
     2101 caaaagaaga agaaactgaa gagtcagaat atgattccga gcatgaaaat tctgaacctg
     2161 ttactaacat tcgaaatcca caagtagctg ccacctggaa tgaagtaaat agtaattcta
     2221 aggcacagtg tgtttctaat aatagagatg ggagatcagt taattctaat tgtgaaatta
     2281 acaacagatc tgctgccaac ataagggctc taaacatgcc tccttcttta gcagattgtc
     2341 gatacaatag agaacaagaa caggggattc acgttgcaca aggtgaaggt gaggaggagg
     2401 aagaggaaga agcagaagat gaggcagtca gtggagcgtc attatctagt catcggagca
     2461 gtctggttga tgagacgcct gaagatgctg aatttgaaca gaagatcagc agacttatgg
     2521 ctgcaaaaca gaaacttaga cagttacaag atcttgttgc attggtgcag gatgatgata
     2581 cagcagatca aggagttatc tctgccaata cctcaaattt ggatgatttc tacccagcag
     2641 aagaagacac caaacaaaat gcaaataaca ctagaggaaa taccaataaa acacagaaag
     2701 atgctggagt aaatgaaaag gcaagagaga aattttatga ggctaaacta cagcagcaac
     2761 agagagagct caaacaattg caggaagaaa gaaagaaact gattgagatt caagagaaaa
     2821 ttcaagcatt gcaaaaggca tgtcctgacc tacagctgtc agccactagt gcaggtaatt
     2881 gtcccacaaa aaaatatatg ccagctgtta cttcaacccc aactgttaat gaaaatgaag
     2941 ccagtacaag cagatctgct tttgaacctg atgatccttc agtggtagat aatgagttgt
     3001 ggtcagaaat gcgaagacac gaaatgttaa gggaagagct gcgacagaga agaaagcagc
     3061 ttgaagcttt gatggctgaa catcagagga ggcaaggtct ggctgaaact acatctccag
     3121 tggctgtttc actgagaagt gatgggtctg agaacctgtg tacgcctcaa cagagtagaa
     3181 cagaaaaaac aatggcaact tggggaggtt ctatccagtg tgcactagat ggagaaggag
     3241 atgaagatgg ttacctttct gaagcagttg ttcggacaga tgaagacgag gaggaggagg
     3301 agcaagacgc cggctcccat gatagctttt ccgtgtgtcc tcctagcagc gcaaatcata
     3361 actcctataa tgtaaaggaa actaaaaata ggtggaagaa caatcgccct ttttcagcag
     3421 atggaaatta tcgtccttta gccaggacaa gacaacagaa tatcagcatg cagcgtcagg
     3481 aaaaccttcg ctgggtgtca gaactctctt atgtagaaga gaaagaacag tggcaagaac
     3541 aaatcaatca gctaaagaaa caacttgatt tcagtgtcag tatttgtcag actttgatgc
     3601 aagaccagca gactctgtct tgtctgctac aaactcttct cacgggccct tacagtgtta
     3661 tgcccagcaa tgttgcatct cctcaagtac accttataat gcaccagttg aaccagtgct
     3721 acacccagct aacatggcaa cagaataatg tacaaaggtt gaagcaaacg ctaaatgaac
     3781 ttatgcgcca acaaaatcat ccagaaaaac ctggaagcaa ggaaagagtc agtagtgcat
     3841 cacaccctcc ttctcccagt ttattttgtc ctttcagctt tccagcacag cctgtaaatc
     3901 tgttcaacct accggggttt actaattttt catcatttgc accaggtatg aatttcagcc
     3961 ctttatttcc ttctaatttt ggagattttt ctcaaaatat ttctacaccc actgaacagc
     4021 agcaaccatt agcccagaat ctttcaggga aaacagaata catggctttt ccaaaacctt
     4081 ttgaaagtag ttcttctgtt ggagcagaaa aacaaaggaa tcaaaaacag cccgaagagg
     4141 aggtggagaa cagtaggaca ccatggttat atgaccaaga aggtgaagta gaaaaaccat
     4201 ttctcaagac tggatgtgca gtgtctgtaa agaaaacaac aaatagtaat cgcaaaaatc
     4261 aattagatac cagtaggaga agacgccaat ttgatgaaga gtcgttagaa agctttagca
     4321 gtatgcctga cccagtagat ccaacaacag taactaaaac attcaagtca agaaaagcat
     4381 ctgcacaggc cagcctggca tctaaagata aaactcccaa atcaaagagt aagaagaggc
     4441 attctactca gctgaaaagc agagttaaaa atattgggta tgaaagtgcc agtatgtcta
     4501 gcacatgtga accttgcaaa agtaggaaca gacattcagc ccagactgaa gagcctgttc
     4561 aagcaaaagt attcagcaga aagaatcatg agcagctgga aaaagtacta agatatagta
     4621 ggtctacaga aatgtcttca gcacatgcta ggagaatact acagcaatct aacagaaatg
     4681 catgcaatga agcgccagaa accgggagtg atttttccat gtttgaagct ttgcgggata
     4741 ccatttattc tgaagtagct acgttgattt ctcaaaatga atctcgtcca cattttctta
     4801 ttgaactctt ccatgaactt cagctactga atacagacta tttgagacag agggctttat
     4861 atgccttgca ggacatagta tccagacata tttctgagaa ccatgaaaaa gaaggggaaa
     4921 acgtaaagtc agtgaattct ggtacttgga tagcatcaaa ctcagaactt actcccagtg
     4981 aaagccttgc tactactgat gatgaaactt ttgagaagaa ctttgagaga gaaacacata
     5041 aaataagtga gcaaaatgat gctgataatg ctagtgtcac gtctgtatct tcaaattttg
     5101 agccttttgc aacagatgat ctgggtaaca ctgtgattca cttagatcaa gcattagcca
     5161 gaatgagaga atatgagcgt atgaagactg agactgaaag taacacaaat gtcagatgca
     5221 cctgcaggat tatagaggat gaggatggtg ctgctgcccc gactacggtt gatagtttag
     5281 aagtggaaac tcctattatt gaaaatcata gttcacagca atctgtaagt gaagtttcta
     5341 ccgtcccatg tcctagaatt gatacacagc aactggaccg gcaaattaaa gcaattatga
     5401 aagaagtcat tccctttttg aaggagcaca tggatgaagt atgctcttct caacttctaa
     5461 cctcagtaag acgcatggtt ttgactctta cccagcaaaa cgatgagagc aaagagtttg
     5521 taaagttctt tcataaacaa cttggaagta tattacagga ttcactggca aaatttgctg
     5581 gcagaaaact gaaagattgt ggagaagatc ttcttgtaga gatatctgaa gtgttattta
     5641 atgaattggc tttctttaaa ctcatgcaag atttggataa taatagtata actgttaaac
     5701 agagatgcaa aaggaaaatt gaagcagctg gagtgataca gtcttacgca aaagaggcca
     5761 aaaggattct tgaaggagat catggctcac ctgctggaga aattgatgat gaagacaaag
     5821 ataaggatga gactgaaaca gttaaacaga gtcaaacatc tgaggtttat gatggtgacg
     5881 gtcccaaaaa tgtgagctct gatgtctctg atcaagagga agatgaagaa agtgaagaat
     5941 gtccagtgtc tattaatttg tccaaagctg aaactcaggc tttgactaat tatggaagtg
     6001 gagaagatga gaatgaagat gaagaaatag aagaatttga agagggacct gtagatgtcc
     6061 agacttcact gcaggctaac actgaaacta cagaagaaaa tgaacatgac gatcaggttc
     6121 cacagcatga ttttgaaaaa tcagcggaaa gcaaaaatgt cccatcagaa caagaaccca
     6181 ctactagtaa agatgaccaa gatagcactc ctgtgaagcc ctgttacctc aatatcttgg
     6241 aaaatgagca acctttaaac agcactgtcc aaaaggacgc tcttactacc atcgattcat
     6301 ctaatcagcc taacgctttg cctttacctt taactgaaat tgaaaccttg gtgcctagag
     6361 tcaaagaagt taaatccgcc caggaaactc ctgaaagctc tttggctgga agtcctgata
     6421 ctgaatctcc agtgttagtg aatgactatg aagcagaatc tggtaacata agtcaaaaat
     6481 ctgatgaaga agactttgtg aaagttgaag atttaccact taaactgaca atatattcag
     6541 aggcagatct aaggaagaaa atggtagaag aagaacagaa aaaccattta tctggtgaaa
     6601 tattacgtga aatgcagact gaagaactag ctgggaattc tcagacacta aaagaacctg
     6661 agccaagtta tagtcccaga tttccttctt tatgggtcta atagcacaac ccaagggcca
     6721 ctcggaggag cacatttctt gcatcaaggt caaagatttt ctttttgttc atcaattcat
     6781 cagctgatta aactcatata agattttttg ttttttttaa gaaatagggt gaagagaagt
     6841 gcaaaccaaa tgtcaaacct tcagttaatt cctcactctt cagcccattt ctgcctgtta
     6901 ggactcagtt ggtaccctct gcactgccgc ctgtcctagt gtgtctaggc tgcagcttcc
     6961 tcccctcttc tctgtgcctc catctccttt gagcatcctg ggaacttgtt gtggttcgcc
     7021 atcctctgtt ctctcacagc cactcttctt ctgttctggg tttattcatt tttatacttc
     7081 ttttcttttt tttttctagt ggggctttct tttggagaga gaggaagtat ctgcttagtc
     7141 tgccgtctta aaatggaaac ccttacctgt gccttttaaa ctcttgctgt gtgttaccag
     7201 ggaattattg tagcaaacta agtttctttt gtaataactt tatattagaa atgaaagttt
     7261 taatggaaga gagcagtatt aaactaaatt ctataaggtc ttaacttagt aagtaattta
     7321 ta
//
LOCUS       XM_032618256            7319 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X21, mRNA.
ACCESSION   XM_032618256
VERSION     XM_032618256.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7319
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7319
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6698
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X21"
                     /protein_id="XP_032474147.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARDPQQEPMEEIENL
                     KKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVP
                     CRQPARSPFHQRVPLRVVTETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVP
                     DNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTL
                     RDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASL
                     VSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEET
                     EESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRS
                     AANIRALNMPPSLDCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLV
                     DETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAE
                     EDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQE
                     KIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVD
                     NELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCT
                     PQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVC
                     PPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSY
                     VEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQ
                     VHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPS
                     LFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLA
                     QNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLK
                     TGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKAS
                     AQASLASKDKTPKSKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEP
                     VQAKVFSRKNHEQLEKVLRYSRSTEMSSAHARRILQQSNRNACNEAPETGSDFSMFEA
                     LRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENH
                     EKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASV
                     TSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGA
                     AAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKE
                     HMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDC
                     GEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILE
                     GDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPV
                     SINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVP
                     QHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTID
                     SSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNI
                     SQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQ
                     TLKEPEPSYSPRFPSLWV"
     misc_feature    4701..6599
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgccagaga tcctcagcag gagcctatgg aagagataga aaatttgaag aaacaacacg
     1261 atttattaaa aaggatgtta cagcagcagg agcagctgag agctctgcag ggacgacaag
     1321 ctgctcttct tgctctgcag cataaggcag agcaagctat tgctgtgatg gatgattctg
     1381 aaaaggttgc agggacaact cctggtcatc atactgtacc gtgcagacag ccagctcgct
     1441 ctccttttca tcagagagta cccttaagag ttgtaacaga aactacaggt agcctatctg
     1501 gagtcagtat cacatctgaa ctaaatgaag aattgaatga tttaattcag cgttttcata
     1561 atcagcttcg tgattctcag cctccacctg ttccagacaa tagaagacaa gcagaaagtc
     1621 tttcattaac tagggaggtt tctcagagca gaaatccatc agtttcagag catttacctg
     1681 atgagaaagt ccagcttttt agcaaaatga gagtgttaca agaaaagaaa caaaaaatgg
     1741 acaagctgct tggagaactt catacacttc gagatgagca tttgaacaat tcatcctttg
     1801 tgccttcttc agcctcccca caaaggagtg tggatcagag aagtacaacc gcagctccct
     1861 ctgctcctgt aggcttaaca ccagttgtca atggagaatc caatagcctc acatcatctg
     1921 ttccttatcc tgctgcttct ctagtttctc agaatcagag tgaaaatgaa ggccacctaa
     1981 atccaactga aaaactccag aagttaaatg aagttcgaaa gaggttgaat gagctaagag
     2041 agttagttca ttattacgag caaacatcag atatgatgac agatgctgta aatgaaaaca
     2101 caaaagaaga agaaactgaa gagtcagaat atgattccga gcatgaaaat tctgaacctg
     2161 ttactaacat tcgaaatcca caagtagctg ccacctggaa tgaagtaaat agtaattcta
     2221 aggcacagtg tgtttctaat aatagagatg ggagatcagt taattctaat tgtgaaatta
     2281 acaacagatc tgctgccaac ataagggctc taaacatgcc tccttcttta gattgtcgat
     2341 acaatagaga acaagaacag gggattcacg ttgcacaagg tgaaggtgag gaggaggaag
     2401 aggaagaagc agaagatgag gcagtcagtg gagcgtcatt atctagtcat cggagcagtc
     2461 tggttgatga gacgcctgaa gatgctgaat ttgaacagaa gatcagcaga cttatggctg
     2521 caaaacagaa acttagacag ttacaagatc ttgttgcatt ggtgcaggat gatgatacag
     2581 cagatcaagg agttatctct gccaatacct caaatttgga tgatttctac ccagcagaag
     2641 aagacaccaa acaaaatgca aataacacta gaggaaatac caataaaaca cagaaagatg
     2701 ctggagtaaa tgaaaaggca agagagaaat tttatgaggc taaactacag cagcaacaga
     2761 gagagctcaa acaattgcag gaagaaagaa agaaactgat tgagattcaa gagaaaattc
     2821 aagcattgca aaaggcatgt cctgacctac agctgtcagc cactagtgca ggtaattgtc
     2881 ccacaaaaaa atatatgcca gctgttactt caaccccaac tgttaatgaa aatgaagcca
     2941 gtacaagcag atctgctttt gaacctgatg atccttcagt ggtagataat gagttgtggt
     3001 cagaaatgcg aagacacgaa atgttaaggg aagagctgcg acagagaaga aagcagcttg
     3061 aagctttgat ggctgaacat cagaggaggc aaggtctggc tgaaactaca tctccagtgg
     3121 ctgtttcact gagaagtgat gggtctgaga acctgtgtac gcctcaacag agtagaacag
     3181 aaaaaacaat ggcaacttgg ggaggttcta tccagtgtgc actagatgga gaaggagatg
     3241 aagatggtta cctttctgaa gcagttgttc ggacagatga agacgaggag gaggaggagc
     3301 aagacgccgg ctcccatgat agcttttccg tgtgtcctcc tagcagcgca aatcataact
     3361 cctataatgt aaaggaaact aaaaataggt ggaagaacaa tcgccctttt tcagcagatg
     3421 gaaattatcg tcctttagcc aggacaagac aacagaatat cagcatgcag cgtcaggaaa
     3481 accttcgctg ggtgtcagaa ctctcttatg tagaagagaa agaacagtgg caagaacaaa
     3541 tcaatcagct aaagaaacaa cttgatttca gtgtcagtat ttgtcagact ttgatgcaag
     3601 accagcagac tctgtcttgt ctgctacaaa ctcttctcac gggcccttac agtgttatgc
     3661 ccagcaatgt tgcatctcct caagtacacc ttataatgca ccagttgaac cagtgctaca
     3721 cccagctaac atggcaacag aataatgtac aaaggttgaa gcaaacgcta aatgaactta
     3781 tgcgccaaca aaatcatcca gaaaaacctg gaagcaagga aagagtcagt agtgcatcac
     3841 accctccttc tcccagttta ttttgtcctt tcagctttcc agcacagcct gtaaatctgt
     3901 tcaacctacc ggggtttact aatttttcat catttgcacc aggtatgaat ttcagccctt
     3961 tatttccttc taattttgga gatttttctc aaaatatttc tacacccact gaacagcagc
     4021 aaccattagc ccagaatctt tcagggaaaa cagaatacat ggcttttcca aaaccttttg
     4081 aaagtagttc ttctgttgga gcagaaaaac aaaggaatca aaaacagccc gaagaggagg
     4141 tggagaacag taggacacca tggttatatg accaagaagg tgaagtagaa aaaccatttc
     4201 tcaagactgg atgtgcagtg tctgtaaaga aaacaacaaa tagtaatcgc aaaaatcaat
     4261 tagataccag taggagaaga cgccaatttg atgaagagtc gttagaaagc tttagcagta
     4321 tgcctgaccc agtagatcca acaacagtaa ctaaaacatt caagtcaaga aaagcatctg
     4381 cacaggccag cctggcatct aaagataaaa ctcccaaatc aaagagtaag aagaggcatt
     4441 ctactcagct gaaaagcaga gttaaaaata ttgggtatga aagtgccagt atgtctagca
     4501 catgtgaacc ttgcaaaagt aggaacagac attcagccca gactgaagag cctgttcaag
     4561 caaaagtatt cagcagaaag aatcatgagc agctggaaaa agtactaaga tatagtaggt
     4621 ctacagaaat gtcttcagca catgctagga gaatactaca gcaatctaac agaaatgcat
     4681 gcaatgaagc gccagaaacc gggagtgatt tttccatgtt tgaagctttg cgggatacca
     4741 tttattctga agtagctacg ttgatttctc aaaatgaatc tcgtccacat tttcttattg
     4801 aactcttcca tgaacttcag ctactgaata cagactattt gagacagagg gctttatatg
     4861 ccttgcagga catagtatcc agacatattt ctgagaacca tgaaaaagaa ggggaaaacg
     4921 taaagtcagt gaattctggt acttggatag catcaaactc agaacttact cccagtgaaa
     4981 gccttgctac tactgatgat gaaacttttg agaagaactt tgagagagaa acacataaaa
     5041 taagtgagca aaatgatgct gataatgcta gtgtcacgtc tgtatcttca aattttgagc
     5101 cttttgcaac agatgatctg ggtaacactg tgattcactt agatcaagca ttagccagaa
     5161 tgagagaata tgagcgtatg aagactgaga ctgaaagtaa cacaaatgtc agatgcacct
     5221 gcaggattat agaggatgag gatggtgctg ctgccccgac tacggttgat agtttagaag
     5281 tggaaactcc tattattgaa aatcatagtt cacagcaatc tgtaagtgaa gtttctaccg
     5341 tcccatgtcc tagaattgat acacagcaac tggaccggca aattaaagca attatgaaag
     5401 aagtcattcc ctttttgaag gagcacatgg atgaagtatg ctcttctcaa cttctaacct
     5461 cagtaagacg catggttttg actcttaccc agcaaaacga tgagagcaaa gagtttgtaa
     5521 agttctttca taaacaactt ggaagtatat tacaggattc actggcaaaa tttgctggca
     5581 gaaaactgaa agattgtgga gaagatcttc ttgtagagat atctgaagtg ttatttaatg
     5641 aattggcttt ctttaaactc atgcaagatt tggataataa tagtataact gttaaacaga
     5701 gatgcaaaag gaaaattgaa gcagctggag tgatacagtc ttacgcaaaa gaggccaaaa
     5761 ggattcttga aggagatcat ggctcacctg ctggagaaat tgatgatgaa gacaaagata
     5821 aggatgagac tgaaacagtt aaacagagtc aaacatctga ggtttatgat ggtgacggtc
     5881 ccaaaaatgt gagctctgat gtctctgatc aagaggaaga tgaagaaagt gaagaatgtc
     5941 cagtgtctat taatttgtcc aaagctgaaa ctcaggcttt gactaattat ggaagtggag
     6001 aagatgagaa tgaagatgaa gaaatagaag aatttgaaga gggacctgta gatgtccaga
     6061 cttcactgca ggctaacact gaaactacag aagaaaatga acatgacgat caggttccac
     6121 agcatgattt tgaaaaatca gcggaaagca aaaatgtccc atcagaacaa gaacccacta
     6181 ctagtaaaga tgaccaagat agcactcctg tgaagccctg ttacctcaat atcttggaaa
     6241 atgagcaacc tttaaacagc actgtccaaa aggacgctct tactaccatc gattcatcta
     6301 atcagcctaa cgctttgcct ttacctttaa ctgaaattga aaccttggtg cctagagtca
     6361 aagaagttaa atccgcccag gaaactcctg aaagctcttt ggctggaagt cctgatactg
     6421 aatctccagt gttagtgaat gactatgaag cagaatctgg taacataagt caaaaatctg
     6481 atgaagaaga ctttgtgaaa gttgaagatt taccacttaa actgacaata tattcagagg
     6541 cagatctaag gaagaaaatg gtagaagaag aacagaaaaa ccatttatct ggtgaaatat
     6601 tacgtgaaat gcagactgaa gaactagctg ggaattctca gacactaaaa gaacctgagc
     6661 caagttatag tcccagattt ccttctttat gggtctaata gcacaaccca agggccactc
     6721 ggaggagcac atttcttgca tcaaggtcaa agattttctt tttgttcatc aattcatcag
     6781 ctgattaaac tcatataaga ttttttgttt tttttaagaa atagggtgaa gagaagtgca
     6841 aaccaaatgt caaaccttca gttaattcct cactcttcag cccatttctg cctgttagga
     6901 ctcagttggt accctctgca ctgccgcctg tcctagtgtg tctaggctgc agcttcctcc
     6961 cctcttctct gtgcctccat ctcctttgag catcctggga acttgttgtg gttcgccatc
     7021 ctctgttctc tcacagccac tcttcttctg ttctgggttt attcattttt atacttcttt
     7081 tctttttttt ttctagtggg gctttctttt ggagagagag gaagtatctg cttagtctgc
     7141 cgtcttaaaa tggaaaccct tacctgtgcc ttttaaactc ttgctgtgtg ttaccaggga
     7201 attattgtag caaactaagt ttcttttgta ataactttat attagaaatg aaagttttaa
     7261 tggaagagag cagtattaaa ctaaattcta taaggtctta acttagtaag taatttata
//
LOCUS       XM_032618257            7299 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X22, mRNA.
ACCESSION   XM_032618257
VERSION     XM_032618257.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7299
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7299
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             430..6678
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X22"
                     /protein_id="XP_032474148.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSITSELNEELNDLIQRFHNQL
                     RDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMD
                     KLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTS
                     SVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAV
                     NENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVN
                     SNCEINNRSAANIRALNMPPSLDCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGAS
                     LSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTS
                     NLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEE
                     RKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAF
                     EPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLR
                     SDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDA
                     GSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQEN
                     LRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSV
                     MPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVS
                     SASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNIST
                     PTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQE
                     GEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVT
                     KTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRN
                     RHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSETGSDFSMFEALRDTIYSEVA
                     TLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSV
                     NSGTWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPF
                     ATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLE
                     VETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQL
                     LTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISE
                     VLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEI
                     DDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQ
                     ALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAES
                     KNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPL
                     PLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFV
                     KVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYS
                     PRFPSLWV"
     misc_feature    4681..6579
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 ctccagtcta gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc
       61 ggccgttgcc gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc
      121 gcccctcttc tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc
      181 gagtaggtga tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact
      241 ctccctgctg tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg
      301 ctactccgcc cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa
      361 acaggaaagg agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata
      421 aaagccagta tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta
      481 ccaaactgga gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa
      541 cagaagaagg caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat
      601 aaaagggtaa ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg
      661 aagactccac atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag
      721 gcagaattag agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt
      781 ggaagtgatt ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac
      841 cgaaagccct tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct
      901 gtaaatcctc aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct
      961 gctttaagta atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag
     1021 cctgcaatgg agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact
     1081 aaagctagtt ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag
     1141 cgccttactc atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc
     1201 caaaaaattc ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg
     1261 ggatctggtt ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca
     1321 gataccacgg ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa
     1381 caacacgatt tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga
     1441 cgacaagctg ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat
     1501 gattctgttg taacagaaac tacaggtagc ctatctggag tcagtatcac atctgaacta
     1561 aatgaagaat tgaatgattt aattcagcgt tttcataatc agcttcgtga ttctcagcct
     1621 ccacctgttc cagacaatag aagacaagca gaaagtcttt cattaactag ggaggtttct
     1681 cagagcagaa atccatcagt ttcagagcat ttacctgatg agaaagtcca gctttttagc
     1741 aaaatgagag tgttacaaga aaagaaacaa aaaatggaca agctgcttgg agaacttcat
     1801 acacttcgag atgagcattt gaacaattca tcctttgtgc cttcttcagc ctccccacaa
     1861 aggagtgtgg atcagagaag tacaaccgca gctccctctg ctcctgtagg cttaacacca
     1921 gttgtcaatg gagaatccaa tagcctcaca tcatctgttc cttatcctgc tgcttctcta
     1981 gtttctcaga atcagagtga aaatgaaggc cacctaaatc caactgaaaa actccagaag
     2041 ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt tagttcatta ttacgagcaa
     2101 acatcagata tgatgacaga tgctgtaaat gaaaacacaa aagaagaaga aactgaagag
     2161 tcagaatatg attccgagca tgaaaattct gaacctgtta ctaacattcg aaatccacaa
     2221 gtagctgcca cctggaatga agtaaatagt aattctaagg cacagtgtgt ttctaataat
     2281 agagatggga gatcagttaa ttctaattgt gaaattaaca acagatctgc tgccaacata
     2341 agggctctaa acatgcctcc ttctttagat tgtcgataca atagagaaca agaacagggg
     2401 attcacgttg cacaaggtga aggtgaggag gaggaagagg aagaagcaga agatgaggca
     2461 gtcagtggag cgtcattatc tagtcatcgg agcagtctgg ttgatgagac gcctgaagat
     2521 gctgaatttg aacagaagat cagcagactt atggctgcaa aacagaaact tagacagtta
     2581 caagatcttg ttgcattggt gcaggatgat gatacagcag atcaaggagt tatctctgcc
     2641 aatacctcaa atttggatga tttctaccca gcagaagaag acaccaaaca aaatgcaaat
     2701 aacactagag gaaataccaa taaaacacag aaagatgctg gagtaaatga aaaggcaaga
     2761 gagaaatttt atgaggctaa actacagcag caacagagag agctcaaaca attgcaggaa
     2821 gaaagaaaga aactgattga gattcaagag aaaattcaag cattgcaaaa ggcatgtcct
     2881 gacctacagc tgtcagccac tagtgcaggt aattgtccca caaaaaaata tatgccagct
     2941 gttacttcaa ccccaactgt taatgaaaat gaagccagta caagcagatc tgcttttgaa
     3001 cctgatgatc cttcagtggt agataatgag ttgtggtcag aaatgcgaag acacgaaatg
     3061 ttaagggaag agctgcgaca gagaagaaag cagcttgaag ctttgatggc tgaacatcag
     3121 aggaggcaag gtctggctga aactacatct ccagtggctg tttcactgag aagtgatggg
     3181 tctgagaacc tgtgtacgcc tcaacagagt agaacagaaa aaacaatggc aacttgggga
     3241 ggttctatcc agtgtgcact agatggagaa ggagatgaag atggttacct ttctgaagca
     3301 gttgttcgga cagatgaaga cgaggaggag gaggagcaag acgccggctc ccatgatagc
     3361 ttttccgtgt gtcctcctag cagcgcaaat cataactcct ataatgtaaa ggaaactaaa
     3421 aataggtgga agaacaatcg ccctttttca gcagatggaa attatcgtcc tttagccagg
     3481 acaagacaac agaatatcag catgcagcgt caggaaaacc ttcgctgggt gtcagaactc
     3541 tcttatgtag aagagaaaga acagtggcaa gaacaaatca atcagctaaa gaaacaactt
     3601 gatttcagtg tcagtatttg tcagactttg atgcaagacc agcagactct gtcttgtctg
     3661 ctacaaactc ttctcacggg cccttacagt gttatgccca gcaatgttgc atctcctcaa
     3721 gtacacctta taatgcacca gttgaaccag tgctacaccc agctaacatg gcaacagaat
     3781 aatgtacaaa ggttgaagca aacgctaaat gaacttatgc gccaacaaaa tcatccagaa
     3841 aaacctggaa gcaaggaaag agtcagtagt gcatcacacc ctccttctcc cagtttattt
     3901 tgtcctttca gctttccagc acagcctgta aatctgttca acctaccggg gtttactaat
     3961 ttttcatcat ttgcaccagg tatgaatttc agccctttat ttccttctaa ttttggagat
     4021 ttttctcaaa atatttctac acccactgaa cagcagcaac cattagccca gaatctttca
     4081 gggaaaacag aatacatggc ttttccaaaa ccttttgaaa gtagttcttc tgttggagca
     4141 gaaaaacaaa ggaatcaaaa acagcccgaa gaggaggtgg agaacagtag gacaccatgg
     4201 ttatatgacc aagaaggtga agtagaaaaa ccatttctca agactggatg tgcagtgtct
     4261 gtaaagaaaa caacaaatag taatcgcaaa aatcaattag ataccagtag gagaagacgc
     4321 caatttgatg aagagtcgtt agaaagcttt agcagtatgc ctgacccagt agatccaaca
     4381 acagtaacta aaacattcaa gtcaagaaaa gcatctgcac aggccagcct ggcatctaaa
     4441 gataaaactc ccaaatcaaa gagtaagaag aggcattcta ctcagctgaa aagcagagtt
     4501 aaaaatattg ggtatgaaag tgccagtatg tctagcacat gtgaaccttg caaaagtagg
     4561 aacagacatt cagcccagac tgaagagcct gttcaagcaa aagtattcag cagaaagaat
     4621 catgagcagc tggaaaaagt actaagatat agtaggtcta cagaaatgtc ttcagaaacc
     4681 gggagtgatt tttccatgtt tgaagctttg cgggatacca tttattctga agtagctacg
     4741 ttgatttctc aaaatgaatc tcgtccacat tttcttattg aactcttcca tgaacttcag
     4801 ctactgaata cagactattt gagacagagg gctttatatg ccttgcagga catagtatcc
     4861 agacatattt ctgagaacca tgaaaaagaa ggggaaaacg taaagtcagt gaattctggt
     4921 acttggatag catcaaactc agaacttact cccagtgaaa gccttgctac tactgatgat
     4981 gaaacttttg agaagaactt tgagagagaa acacataaaa taagtgagca aaatgatgct
     5041 gataatgcta gtgtcacgtc tgtatcttca aattttgagc cttttgcaac agatgatctg
     5101 ggtaacactg tgattcactt agatcaagca ttagccagaa tgagagaata tgagcgtatg
     5161 aagactgaga ctgaaagtaa cacaaatgtc agatgcacct gcaggattat agaggatgag
     5221 gatggtgctg ctgccccgac tacggttgat agtttagaag tggaaactcc tattattgaa
     5281 aatcatagtt cacagcaatc tgtaagtgaa gtttctaccg tcccatgtcc tagaattgat
     5341 acacagcaac tggaccggca aattaaagca attatgaaag aagtcattcc ctttttgaag
     5401 gagcacatgg atgaagtatg ctcttctcaa cttctaacct cagtaagacg catggttttg
     5461 actcttaccc agcaaaacga tgagagcaaa gagtttgtaa agttctttca taaacaactt
     5521 ggaagtatat tacaggattc actggcaaaa tttgctggca gaaaactgaa agattgtgga
     5581 gaagatcttc ttgtagagat atctgaagtg ttatttaatg aattggcttt ctttaaactc
     5641 atgcaagatt tggataataa tagtataact gttaaacaga gatgcaaaag gaaaattgaa
     5701 gcagctggag tgatacagtc ttacgcaaaa gaggccaaaa ggattcttga aggagatcat
     5761 ggctcacctg ctggagaaat tgatgatgaa gacaaagata aggatgagac tgaaacagtt
     5821 aaacagagtc aaacatctga ggtttatgat ggtgacggtc ccaaaaatgt gagctctgat
     5881 gtctctgatc aagaggaaga tgaagaaagt gaagaatgtc cagtgtctat taatttgtcc
     5941 aaagctgaaa ctcaggcttt gactaattat ggaagtggag aagatgagaa tgaagatgaa
     6001 gaaatagaag aatttgaaga gggacctgta gatgtccaga cttcactgca ggctaacact
     6061 gaaactacag aagaaaatga acatgacgat caggttccac agcatgattt tgaaaaatca
     6121 gcggaaagca aaaatgtccc atcagaacaa gaacccacta ctagtaaaga tgaccaagat
     6181 agcactcctg tgaagccctg ttacctcaat atcttggaaa atgagcaacc tttaaacagc
     6241 actgtccaaa aggacgctct tactaccatc gattcatcta atcagcctaa cgctttgcct
     6301 ttacctttaa ctgaaattga aaccttggtg cctagagtca aagaagttaa atccgcccag
     6361 gaaactcctg aaagctcttt ggctggaagt cctgatactg aatctccagt gttagtgaat
     6421 gactatgaag cagaatctgg taacataagt caaaaatctg atgaagaaga ctttgtgaaa
     6481 gttgaagatt taccacttaa actgacaata tattcagagg cagatctaag gaagaaaatg
     6541 gtagaagaag aacagaaaaa ccatttatct ggtgaaatat tacgtgaaat gcagactgaa
     6601 gaactagctg ggaattctca gacactaaaa gaacctgagc caagttatag tcccagattt
     6661 ccttctttat gggtctaata gcacaaccca agggccactc ggaggagcac atttcttgca
     6721 tcaaggtcaa agattttctt tttgttcatc aattcatcag ctgattaaac tcatataaga
     6781 ttttttgttt tttttaagaa atagggtgaa gagaagtgca aaccaaatgt caaaccttca
     6841 gttaattcct cactcttcag cccatttctg cctgttagga ctcagttggt accctctgca
     6901 ctgccgcctg tcctagtgtg tctaggctgc agcttcctcc cctcttctct gtgcctccat
     6961 ctcctttgag catcctggga acttgttgtg gttcgccatc ctctgttctc tcacagccac
     7021 tcttcttctg ttctgggttt attcattttt atacttcttt tctttttttt ttctagtggg
     7081 gctttctttt ggagagagag gaagtatctg cttagtctgc cgtcttaaaa tggaaaccct
     7141 tacctgtgcc ttttaaactc ttgctgtgtg ttaccaggga attattgtag caaactaagt
     7201 ttcttttgta ataactttat attagaaatg aaagttttaa tggaagagag cagtattaaa
     7261 ctaaattcta taaggtctta acttagtaag taatttata
//
LOCUS       XM_032618258            8637 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X23, mRNA.
ACCESSION   XM_032618258
VERSION     XM_032618258.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8637
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8637
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 35 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             430..6663
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X23"
                     /protein_id="XP_032474149.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSITSELNEELNDLIQRFHNQL
                     RDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMD
                     KLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTS
                     SVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAV
                     NENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVN
                     SNCEINNRSAANIRALNMPPSLDCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGAS
                     LSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTS
                     NLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEE
                     RKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAF
                     EPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLR
                     SDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDA
                     GSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQEN
                     LRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSV
                     MPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVS
                     SASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNIST
                     PTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQE
                     GEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVT
                     KTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKNIGYESASMSSTCEPCKSRN
                     RHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSETGSDFSMFEALRDTIYSEVA
                     TLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSV
                     NSGTWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPF
                     ATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLE
                     VETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQL
                     LTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISE
                     VLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEI
                     DDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQ
                     ALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAES
                     KNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPL
                     PLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFV
                     KVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPETVGA
                     QST"
     misc_feature    4681..6579
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 ctccagtcta gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc
       61 ggccgttgcc gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc
      121 gcccctcttc tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc
      181 gagtaggtga tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact
      241 ctccctgctg tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg
      301 ctactccgcc cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa
      361 acaggaaagg agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata
      421 aaagccagta tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta
      481 ccaaactgga gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa
      541 cagaagaagg caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat
      601 aaaagggtaa ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg
      661 aagactccac atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag
      721 gcagaattag agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt
      781 ggaagtgatt ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac
      841 cgaaagccct tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct
      901 gtaaatcctc aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct
      961 gctttaagta atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag
     1021 cctgcaatgg agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact
     1081 aaagctagtt ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag
     1141 cgccttactc atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc
     1201 caaaaaattc ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg
     1261 ggatctggtt ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca
     1321 gataccacgg ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa
     1381 caacacgatt tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga
     1441 cgacaagctg ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat
     1501 gattctgttg taacagaaac tacaggtagc ctatctggag tcagtatcac atctgaacta
     1561 aatgaagaat tgaatgattt aattcagcgt tttcataatc agcttcgtga ttctcagcct
     1621 ccacctgttc cagacaatag aagacaagca gaaagtcttt cattaactag ggaggtttct
     1681 cagagcagaa atccatcagt ttcagagcat ttacctgatg agaaagtcca gctttttagc
     1741 aaaatgagag tgttacaaga aaagaaacaa aaaatggaca agctgcttgg agaacttcat
     1801 acacttcgag atgagcattt gaacaattca tcctttgtgc cttcttcagc ctccccacaa
     1861 aggagtgtgg atcagagaag tacaaccgca gctccctctg ctcctgtagg cttaacacca
     1921 gttgtcaatg gagaatccaa tagcctcaca tcatctgttc cttatcctgc tgcttctcta
     1981 gtttctcaga atcagagtga aaatgaaggc cacctaaatc caactgaaaa actccagaag
     2041 ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt tagttcatta ttacgagcaa
     2101 acatcagata tgatgacaga tgctgtaaat gaaaacacaa aagaagaaga aactgaagag
     2161 tcagaatatg attccgagca tgaaaattct gaacctgtta ctaacattcg aaatccacaa
     2221 gtagctgcca cctggaatga agtaaatagt aattctaagg cacagtgtgt ttctaataat
     2281 agagatggga gatcagttaa ttctaattgt gaaattaaca acagatctgc tgccaacata
     2341 agggctctaa acatgcctcc ttctttagat tgtcgataca atagagaaca agaacagggg
     2401 attcacgttg cacaaggtga aggtgaggag gaggaagagg aagaagcaga agatgaggca
     2461 gtcagtggag cgtcattatc tagtcatcgg agcagtctgg ttgatgagac gcctgaagat
     2521 gctgaatttg aacagaagat cagcagactt atggctgcaa aacagaaact tagacagtta
     2581 caagatcttg ttgcattggt gcaggatgat gatacagcag atcaaggagt tatctctgcc
     2641 aatacctcaa atttggatga tttctaccca gcagaagaag acaccaaaca aaatgcaaat
     2701 aacactagag gaaataccaa taaaacacag aaagatgctg gagtaaatga aaaggcaaga
     2761 gagaaatttt atgaggctaa actacagcag caacagagag agctcaaaca attgcaggaa
     2821 gaaagaaaga aactgattga gattcaagag aaaattcaag cattgcaaaa ggcatgtcct
     2881 gacctacagc tgtcagccac tagtgcaggt aattgtccca caaaaaaata tatgccagct
     2941 gttacttcaa ccccaactgt taatgaaaat gaagccagta caagcagatc tgcttttgaa
     3001 cctgatgatc cttcagtggt agataatgag ttgtggtcag aaatgcgaag acacgaaatg
     3061 ttaagggaag agctgcgaca gagaagaaag cagcttgaag ctttgatggc tgaacatcag
     3121 aggaggcaag gtctggctga aactacatct ccagtggctg tttcactgag aagtgatggg
     3181 tctgagaacc tgtgtacgcc tcaacagagt agaacagaaa aaacaatggc aacttgggga
     3241 ggttctatcc agtgtgcact agatggagaa ggagatgaag atggttacct ttctgaagca
     3301 gttgttcgga cagatgaaga cgaggaggag gaggagcaag acgccggctc ccatgatagc
     3361 ttttccgtgt gtcctcctag cagcgcaaat cataactcct ataatgtaaa ggaaactaaa
     3421 aataggtgga agaacaatcg ccctttttca gcagatggaa attatcgtcc tttagccagg
     3481 acaagacaac agaatatcag catgcagcgt caggaaaacc ttcgctgggt gtcagaactc
     3541 tcttatgtag aagagaaaga acagtggcaa gaacaaatca atcagctaaa gaaacaactt
     3601 gatttcagtg tcagtatttg tcagactttg atgcaagacc agcagactct gtcttgtctg
     3661 ctacaaactc ttctcacggg cccttacagt gttatgccca gcaatgttgc atctcctcaa
     3721 gtacacctta taatgcacca gttgaaccag tgctacaccc agctaacatg gcaacagaat
     3781 aatgtacaaa ggttgaagca aacgctaaat gaacttatgc gccaacaaaa tcatccagaa
     3841 aaacctggaa gcaaggaaag agtcagtagt gcatcacacc ctccttctcc cagtttattt
     3901 tgtcctttca gctttccagc acagcctgta aatctgttca acctaccggg gtttactaat
     3961 ttttcatcat ttgcaccagg tatgaatttc agccctttat ttccttctaa ttttggagat
     4021 ttttctcaaa atatttctac acccactgaa cagcagcaac cattagccca gaatctttca
     4081 gggaaaacag aatacatggc ttttccaaaa ccttttgaaa gtagttcttc tgttggagca
     4141 gaaaaacaaa ggaatcaaaa acagcccgaa gaggaggtgg agaacagtag gacaccatgg
     4201 ttatatgacc aagaaggtga agtagaaaaa ccatttctca agactggatg tgcagtgtct
     4261 gtaaagaaaa caacaaatag taatcgcaaa aatcaattag ataccagtag gagaagacgc
     4321 caatttgatg aagagtcgtt agaaagcttt agcagtatgc ctgacccagt agatccaaca
     4381 acagtaacta aaacattcaa gtcaagaaaa gcatctgcac aggccagcct ggcatctaaa
     4441 gataaaactc ccaaatcaaa gagtaagaag aggcattcta ctcagctgaa aagcagagtt
     4501 aaaaatattg ggtatgaaag tgccagtatg tctagcacat gtgaaccttg caaaagtagg
     4561 aacagacatt cagcccagac tgaagagcct gttcaagcaa aagtattcag cagaaagaat
     4621 catgagcagc tggaaaaagt actaagatat agtaggtcta cagaaatgtc ttcagaaacc
     4681 gggagtgatt tttccatgtt tgaagctttg cgggatacca tttattctga agtagctacg
     4741 ttgatttctc aaaatgaatc tcgtccacat tttcttattg aactcttcca tgaacttcag
     4801 ctactgaata cagactattt gagacagagg gctttatatg ccttgcagga catagtatcc
     4861 agacatattt ctgagaacca tgaaaaagaa ggggaaaacg taaagtcagt gaattctggt
     4921 acttggatag catcaaactc agaacttact cccagtgaaa gccttgctac tactgatgat
     4981 gaaacttttg agaagaactt tgagagagaa acacataaaa taagtgagca aaatgatgct
     5041 gataatgcta gtgtcacgtc tgtatcttca aattttgagc cttttgcaac agatgatctg
     5101 ggtaacactg tgattcactt agatcaagca ttagccagaa tgagagaata tgagcgtatg
     5161 aagactgaga ctgaaagtaa cacaaatgtc agatgcacct gcaggattat agaggatgag
     5221 gatggtgctg ctgccccgac tacggttgat agtttagaag tggaaactcc tattattgaa
     5281 aatcatagtt cacagcaatc tgtaagtgaa gtttctaccg tcccatgtcc tagaattgat
     5341 acacagcaac tggaccggca aattaaagca attatgaaag aagtcattcc ctttttgaag
     5401 gagcacatgg atgaagtatg ctcttctcaa cttctaacct cagtaagacg catggttttg
     5461 actcttaccc agcaaaacga tgagagcaaa gagtttgtaa agttctttca taaacaactt
     5521 ggaagtatat tacaggattc actggcaaaa tttgctggca gaaaactgaa agattgtgga
     5581 gaagatcttc ttgtagagat atctgaagtg ttatttaatg aattggcttt ctttaaactc
     5641 atgcaagatt tggataataa tagtataact gttaaacaga gatgcaaaag gaaaattgaa
     5701 gcagctggag tgatacagtc ttacgcaaaa gaggccaaaa ggattcttga aggagatcat
     5761 ggctcacctg ctggagaaat tgatgatgaa gacaaagata aggatgagac tgaaacagtt
     5821 aaacagagtc aaacatctga ggtttatgat ggtgacggtc ccaaaaatgt gagctctgat
     5881 gtctctgatc aagaggaaga tgaagaaagt gaagaatgtc cagtgtctat taatttgtcc
     5941 aaagctgaaa ctcaggcttt gactaattat ggaagtggag aagatgagaa tgaagatgaa
     6001 gaaatagaag aatttgaaga gggacctgta gatgtccaga cttcactgca ggctaacact
     6061 gaaactacag aagaaaatga acatgacgat caggttccac agcatgattt tgaaaaatca
     6121 gcggaaagca aaaatgtccc atcagaacaa gaacccacta ctagtaaaga tgaccaagat
     6181 agcactcctg tgaagccctg ttacctcaat atcttggaaa atgagcaacc tttaaacagc
     6241 actgtccaaa aggacgctct tactaccatc gattcatcta atcagcctaa cgctttgcct
     6301 ttacctttaa ctgaaattga aaccttggtg cctagagtca aagaagttaa atccgcccag
     6361 gaaactcctg aaagctcttt ggctggaagt cctgatactg aatctccagt gttagtgaat
     6421 gactatgaag cagaatctgg taacataagt caaaaatctg atgaagaaga ctttgtgaaa
     6481 gttgaagatt taccacttaa actgacaata tattcagagg cagatctaag gaagaaaatg
     6541 gtagaagaag aacagaaaaa ccatttatct ggtgaaatat tacgtgaaat gcagactgaa
     6601 gaactagctg ggaattctca gacactaaaa gaacctgaaa cagtgggagc ccaaagtaca
     6661 tgagatgtct tcagaggctc atctaactct ctttacatag tcaatgcata tatggaaatg
     6721 gcactaaata aacatctgtt ttgatctgta aaaaatgtaa attagtttga cactgcattt
     6781 ttggtaggtg tgctaatttc tgcccatggc agtttaaaac atcaaaaact gaattctgga
     6841 cagattcaag ccttgataca ctgtggggtt tttttctttt tctttctgtc attttttttg
     6901 gtcttgattt tttttcccca ttgtgatgtt tggtaacgtt aaatttaaaa tgtagtttta
     6961 aataaagttt ggacttaacc tgtaaactat cttttttgga aattatgttg aattctatac
     7021 agcaagtcac tgttctgtat aattaggcta ttcaaagagc aatggtcaag agttagagaa
     7081 atatactatt tattgtaaag cccagccttt aggccaggct tccaaataat gccagtgttg
     7141 ctgctattgg gtctcatgtt cttttagata cttgcatgtc ttattcctgt gcaagaatag
     7201 ggcaggttat aaaggtttcc aggttattgt agaatatata ttaatattct attcaaattg
     7261 gatgataagt ttagaatact tgtccttagt acgtagaact tacataatta tctattagat
     7321 aaatattttc tagaatttca attcatatct gtgttgcctc agtctaaaag taaaaaaaaa
     7381 aaagttttct ataattagta tttctgcaca gccaagtaaa gtaacattgt gattaatttt
     7441 aaaaggaaaa ccaagatctt taaagtagag attaatagaa ctaaatttat gtaccagcac
     7501 attaaagttc tatatgcctt cggacaacct tgccttttga gatgatagtt tagccaaagc
     7561 atagcagttg cttctgtatg cagtgagaga gaagcaggtt cgcagaggaa gttttgagta
     7621 acgaaaatct acatgacctc tttgtcatga agtaaatcag cttctaaagg tggtgtagct
     7681 ttagatccca aacttgccac atacccagta aggcttcaca tagccagtta acaattaagt
     7741 catctttaca gattccttct tgaataaaat atgaagaatt gttccaaata gtcttttaag
     7801 tttgtcaaca attaactgaa gtatcccata agaagagaat ttggttggta ttcctttgaa
     7861 attcttgcct gatacctcag tgtaaaagtc cagtcaggga gtattaaatg aggatttccc
     7921 tatgagggca ttgactgtat tgctccataa cttaaattat gggagacata tatctccaac
     7981 tttctgaatt agtaaaactt attcagaaaa ctgtcatccc agaaacagga attcttattc
     8041 aattggcttg acttcaggga aactgaaaca taagttacat tatatgtata cttaagttct
     8101 gtatttgttt tctagactct gtacagaaac ttcattttga tactcaagcc aagccttaca
     8161 tattaagact gtctgtctct ctctctgcat gcattttaaa gatcgataca gtggaagcgt
     8221 tgtacttata ccttagttat tactgtagta tctgtgaacc gtatcaaact tgcttatttg
     8281 acttatgtta tagctgttgt aatatggtct gtttttttct attatagtag ataatttagt
     8341 tttaaaatac ctaggacttg agagcagata acttgtttaa tatgtttttc cctggtaact
     8401 gttgctaaag ggttaggcat tgaatattac tgtttgtctt catttttaag ttaaaaattt
     8461 ggttagagat aaaagaggaa gaaaaggtca aaatgagtga gagagaaacc tcgcaggttg
     8521 aaataatgcc taaaagagtg agctcgccag actgtgcagc aggcactctt tgtattttgt
     8581 aacattcact ttgggtaaat gctttttcac tgttaataaa tgtatatcct gcataca
//
LOCUS       XM_032618259            7232 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X24, mRNA.
ACCESSION   XM_032618259
VERSION     XM_032618259.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7232
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7232
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6611
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X24"
                     /protein_id="XP_032474150.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARDPQQEPMEEIENL
                     KKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSI
                     TSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDE
                     KVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAP
                     SAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNE
                     LRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEV
                     NSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLADCRYNREQEQGIHVAQ
                     GEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDL
                     VALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKARE
                     KFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMP
                     AVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMA
                     EHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDG
                     YLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADG
                     NYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLM
                     QDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTL
                     NELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPG
                     MNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRN
                     QKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFD
                     EESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVK
                     NIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSA
                     HARRILQQSNRNACNEAPETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHE
                     LQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLA
                     TTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARM
                     REYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVS
                     TVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESK
                     EFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNS
                     ITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTS
                     EVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEE
                     FEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDST
                     PVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQ
                     ETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRK
                     KMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4614..6512
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgccagaga tcctcagcag gagcctatgg aagagataga aaatttgaag aaacaacacg
     1261 atttattaaa aaggatgtta cagcagcagg agcagctgag agctctgcag ggacgacaag
     1321 ctgctcttct tgctctgcag cataaggcag agcaagctat tgctgtgatg gatgattctg
     1381 ttgtaacaga aactacaggt agcctatctg gagtcagtat cacatctgaa ctaaatgaag
     1441 aattgaatga tttaattcag cgttttcata atcagcttcg tgattctcag cctccacctg
     1501 ttccagacaa tagaagacaa gcagaaagtc tttcattaac tagggaggtt tctcagagca
     1561 gaaatccatc agtttcagag catttacctg atgagaaagt ccagcttttt agcaaaatga
     1621 gagtgttaca agaaaagaaa caaaaaatgg acaagctgct tggagaactt catacacttc
     1681 gagatgagca tttgaacaat tcatcctttg tgccttcttc agcctcccca caaaggagtg
     1741 tggatcagag aagtacaacc gcagctccct ctgctcctgt aggcttaaca ccagttgtca
     1801 atggagaatc caatagcctc acatcatctg ttccttatcc tgctgcttct ctagtttctc
     1861 agaatcagag tgaaaatgaa ggccacctaa atccaactga aaaactccag aagttaaatg
     1921 aagttcgaaa gaggttgaat gagctaagag agttagttca ttattacgag caaacatcag
     1981 atatgatgac agatgctgta aatgaaaaca caaaagaaga agaaactgaa gagtcagaat
     2041 atgattccga gcatgaaaat tctgaacctg ttactaacat tcgaaatcca caagtagctg
     2101 ccacctggaa tgaagtaaat agtaattcta aggcacagtg tgtttctaat aatagagatg
     2161 ggagatcagt taattctaat tgtgaaatta acaacagatc tgctgccaac ataagggctc
     2221 taaacatgcc tccttcttta gcagattgtc gatacaatag agaacaagaa caggggattc
     2281 acgttgcaca aggtgaaggt gaggaggagg aagaggaaga agcagaagat gaggcagtca
     2341 gtggagcgtc attatctagt catcggagca gtctggttga tgagacgcct gaagatgctg
     2401 aatttgaaca gaagatcagc agacttatgg ctgcaaaaca gaaacttaga cagttacaag
     2461 atcttgttgc attggtgcag gatgatgata cagcagatca aggagttatc tctgccaata
     2521 cctcaaattt ggatgatttc tacccagcag aagaagacac caaacaaaat gcaaataaca
     2581 ctagaggaaa taccaataaa acacagaaag atgctggagt aaatgaaaag gcaagagaga
     2641 aattttatga ggctaaacta cagcagcaac agagagagct caaacaattg caggaagaaa
     2701 gaaagaaact gattgagatt caagagaaaa ttcaagcatt gcaaaaggca tgtcctgacc
     2761 tacagctgtc agccactagt gcaggtaatt gtcccacaaa aaaatatatg ccagctgtta
     2821 cttcaacccc aactgttaat gaaaatgaag ccagtacaag cagatctgct tttgaacctg
     2881 atgatccttc agtggtagat aatgagttgt ggtcagaaat gcgaagacac gaaatgttaa
     2941 gggaagagct gcgacagaga agaaagcagc ttgaagcttt gatggctgaa catcagagga
     3001 ggcaaggtct ggctgaaact acatctccag tggctgtttc actgagaagt gatgggtctg
     3061 agaacctgtg tacgcctcaa cagagtagaa cagaaaaaac aatggcaact tggggaggtt
     3121 ctatccagtg tgcactagat ggagaaggag atgaagatgg ttacctttct gaagcagttg
     3181 ttcggacaga tgaagacgag gaggaggagg agcaagacgc cggctcccat gatagctttt
     3241 ccgtgtgtcc tcctagcagc gcaaatcata actcctataa tgtaaaggaa actaaaaata
     3301 ggtggaagaa caatcgccct ttttcagcag atggaaatta tcgtccttta gccaggacaa
     3361 gacaacagaa tatcagcatg cagcgtcagg aaaaccttcg ctgggtgtca gaactctctt
     3421 atgtagaaga gaaagaacag tggcaagaac aaatcaatca gctaaagaaa caacttgatt
     3481 tcagtgtcag tatttgtcag actttgatgc aagaccagca gactctgtct tgtctgctac
     3541 aaactcttct cacgggccct tacagtgtta tgcccagcaa tgttgcatct cctcaagtac
     3601 accttataat gcaccagttg aaccagtgct acacccagct aacatggcaa cagaataatg
     3661 tacaaaggtt gaagcaaacg ctaaatgaac ttatgcgcca acaaaatcat ccagaaaaac
     3721 ctggaagcaa ggaaagagtc agtagtgcat cacaccctcc ttctcccagt ttattttgtc
     3781 ctttcagctt tccagcacag cctgtaaatc tgttcaacct accggggttt actaattttt
     3841 catcatttgc accaggtatg aatttcagcc ctttatttcc ttctaatttt ggagattttt
     3901 ctcaaaatat ttctacaccc actgaacagc agcaaccatt agcccagaat ctttcaggga
     3961 aaacagaata catggctttt ccaaaacctt ttgaaagtag ttcttctgtt ggagcagaaa
     4021 aacaaaggaa tcaaaaacag cccgaagagg aggtggagaa cagtaggaca ccatggttat
     4081 atgaccaaga aggtgaagta gaaaaaccat ttctcaagac tggatgtgca gtgtctgtaa
     4141 agaaaacaac aaatagtaat cgcaaaaatc aattagatac cagtaggaga agacgccaat
     4201 ttgatgaaga gtcgttagaa agctttagca gtatgcctga cccagtagat ccaacaacag
     4261 taactaaaac attcaagtca agaaaagcat ctgcacaggc cagcctggca tctaaagata
     4321 aaactcccaa atcaaagagt aagaagaggc attctactca gctgaaaagc agagttaaaa
     4381 atattgggta tgaaagtgcc agtatgtcta gcacatgtga accttgcaaa agtaggaaca
     4441 gacattcagc ccagactgaa gagcctgttc aagcaaaagt attcagcaga aagaatcatg
     4501 agcagctgga aaaagtacta agatatagta ggtctacaga aatgtcttca gcacatgcta
     4561 ggagaatact acagcaatct aacagaaatg catgcaatga agcgccagaa accgggagtg
     4621 atttttccat gtttgaagct ttgcgggata ccatttattc tgaagtagct acgttgattt
     4681 ctcaaaatga atctcgtcca cattttctta ttgaactctt ccatgaactt cagctactga
     4741 atacagacta tttgagacag agggctttat atgccttgca ggacatagta tccagacata
     4801 tttctgagaa ccatgaaaaa gaaggggaaa acgtaaagtc agtgaattct ggtacttgga
     4861 tagcatcaaa ctcagaactt actcccagtg aaagccttgc tactactgat gatgaaactt
     4921 ttgagaagaa ctttgagaga gaaacacata aaataagtga gcaaaatgat gctgataatg
     4981 ctagtgtcac gtctgtatct tcaaattttg agccttttgc aacagatgat ctgggtaaca
     5041 ctgtgattca cttagatcaa gcattagcca gaatgagaga atatgagcgt atgaagactg
     5101 agactgaaag taacacaaat gtcagatgca cctgcaggat tatagaggat gaggatggtg
     5161 ctgctgcccc gactacggtt gatagtttag aagtggaaac tcctattatt gaaaatcata
     5221 gttcacagca atctgtaagt gaagtttcta ccgtcccatg tcctagaatt gatacacagc
     5281 aactggaccg gcaaattaaa gcaattatga aagaagtcat tccctttttg aaggagcaca
     5341 tggatgaagt atgctcttct caacttctaa cctcagtaag acgcatggtt ttgactctta
     5401 cccagcaaaa cgatgagagc aaagagtttg taaagttctt tcataaacaa cttggaagta
     5461 tattacagga ttcactggca aaatttgctg gcagaaaact gaaagattgt ggagaagatc
     5521 ttcttgtaga gatatctgaa gtgttattta atgaattggc tttctttaaa ctcatgcaag
     5581 atttggataa taatagtata actgttaaac agagatgcaa aaggaaaatt gaagcagctg
     5641 gagtgataca gtcttacgca aaagaggcca aaaggattct tgaaggagat catggctcac
     5701 ctgctggaga aattgatgat gaagacaaag ataaggatga gactgaaaca gttaaacaga
     5761 gtcaaacatc tgaggtttat gatggtgacg gtcccaaaaa tgtgagctct gatgtctctg
     5821 atcaagagga agatgaagaa agtgaagaat gtccagtgtc tattaatttg tccaaagctg
     5881 aaactcaggc tttgactaat tatggaagtg gagaagatga gaatgaagat gaagaaatag
     5941 aagaatttga agagggacct gtagatgtcc agacttcact gcaggctaac actgaaacta
     6001 cagaagaaaa tgaacatgac gatcaggttc cacagcatga ttttgaaaaa tcagcggaaa
     6061 gcaaaaatgt cccatcagaa caagaaccca ctactagtaa agatgaccaa gatagcactc
     6121 ctgtgaagcc ctgttacctc aatatcttgg aaaatgagca acctttaaac agcactgtcc
     6181 aaaaggacgc tcttactacc atcgattcat ctaatcagcc taacgctttg cctttacctt
     6241 taactgaaat tgaaaccttg gtgcctagag tcaaagaagt taaatccgcc caggaaactc
     6301 ctgaaagctc tttggctgga agtcctgata ctgaatctcc agtgttagtg aatgactatg
     6361 aagcagaatc tggtaacata agtcaaaaat ctgatgaaga agactttgtg aaagttgaag
     6421 atttaccact taaactgaca atatattcag aggcagatct aaggaagaaa atggtagaag
     6481 aagaacagaa aaaccattta tctggtgaaa tattacgtga aatgcagact gaagaactag
     6541 ctgggaattc tcagacacta aaagaacctg agccaagtta tagtcccaga tttccttctt
     6601 tatgggtcta atagcacaac ccaagggcca ctcggaggag cacatttctt gcatcaaggt
     6661 caaagatttt ctttttgttc atcaattcat cagctgatta aactcatata agattttttg
     6721 ttttttttaa gaaatagggt gaagagaagt gcaaaccaaa tgtcaaacct tcagttaatt
     6781 cctcactctt cagcccattt ctgcctgtta ggactcagtt ggtaccctct gcactgccgc
     6841 ctgtcctagt gtgtctaggc tgcagcttcc tcccctcttc tctgtgcctc catctccttt
     6901 gagcatcctg ggaacttgtt gtggttcgcc atcctctgtt ctctcacagc cactcttctt
     6961 ctgttctggg tttattcatt tttatacttc ttttcttttt tttttctagt ggggctttct
     7021 tttggagaga gaggaagtat ctgcttagtc tgccgtctta aaatggaaac ccttacctgt
     7081 gccttttaaa ctcttgctgt gtgttaccag ggaattattg tagcaaacta agtttctttt
     7141 gtaataactt tatattagaa atgaaagttt taatggaaga gagcagtatt aaactaaatt
     7201 ctataaggtc ttaacttagt aagtaattta ta
//
LOCUS       XM_032618261            8552 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X25, mRNA.
ACCESSION   XM_032618261
VERSION     XM_032618261.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8552
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8552
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 29 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6578
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X25"
                     /protein_id="XP_032474152.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSEKVAGTTPGHHTVPCRQPARSPFHQRVPLRVVT
                     ETTGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSR
                     NPSVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQR
                     SVDQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQ
                     KLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIR
                     NPQVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLDCRYNR
                     EQEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMAA
                     KQKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQK
                     DAGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATSA
                     GNCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQ
                     RRKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQC
                     ALDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRW
                     KNNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQLD
                     FSVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQ
                     NNVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPG
                     FTNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESS
                     SSVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQL
                     DTSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKKR
                     HSTQLKSRVKNIETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNT
                     DYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDET
                     FEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERM
                     KTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPR
                     IDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFF
                     HKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQR
                     CKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGD
                     GPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPV
                     DVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCY
                     LNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESS
                     LAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEE
                     QKNHLSGEILREMQTEELAGNSQTLKEPETVGAQST"
     misc_feature    4596..6494
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg ggatctggtt
     1261 ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca gataccacgg
     1321 ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa caacacgatt
     1381 tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga cgacaagctg
     1441 ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat gattctgaaa
     1501 aggttgcagg gacaactcct ggtcatcata ctgtaccgtg cagacagcca gctcgctctc
     1561 cttttcatca gagagtaccc ttaagagttg taacagaaac tacaggtagc ctatctggag
     1621 tcagtatcac atctgaacta aatgaagaat tgaatgattt aattcagcgt tttcataatc
     1681 agcttcgtga ttctcagcct ccacctgttc cagacaatag aagacaagca gaaagtcttt
     1741 cattaactag ggaggtttct cagagcagaa atccatcagt ttcagagcat ttacctgatg
     1801 agaaagtcca gctttttagc aaaatgagag tgttacaaga aaagaaacaa aaaatggaca
     1861 agctgcttgg agaacttcat acacttcgag atgagcattt gaacaattca tcctttgtgc
     1921 cttcttcagc ctccccacaa aggagtgtgg atcagagaag tacaaccgca gctccctctg
     1981 ctcctgtagg cttaacacca gttgtcaatg gagaatccaa tagcctcaca tcatctgttc
     2041 cttatcctgc tgcttctcta gtttctcaga atcagagtga aaatgaaggc cacctaaatc
     2101 caactgaaaa actccagaag ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt
     2161 tagttcatta ttacgagcaa acatcagata tgatgacaga tgctgtaaat gaaaacacaa
     2221 aagaagaaga aactgaagag tcagaatatg attccgagca tgaaaattct gaacctgtta
     2281 ctaacattcg aaatccacaa gtagctgcca cctggaatga agtaaatagt aattctaagg
     2341 cacagtgtgt ttctaataat agagatggga gatcagttaa ttctaattgt gaaattaaca
     2401 acagatctgc tgccaacata agggctctaa acatgcctcc ttctttagat tgtcgataca
     2461 atagagaaca agaacagggg attcacgttg cacaaggtga aggtgaggag gaggaagagg
     2521 aagaagcaga agatgaggca gtcagtggag cgtcattatc tagtcatcgg agcagtctgg
     2581 ttgatgagac gcctgaagat gctgaatttg aacagaagat cagcagactt atggctgcaa
     2641 aacagaaact tagacagtta caagatcttg ttgcattggt gcaggatgat gatacagcag
     2701 atcaaggagt tatctctgcc aatacctcaa atttggatga tttctaccca gcagaagaag
     2761 acaccaaaca aaatgcaaat aacactagag gaaataccaa taaaacacag aaagatgctg
     2821 gagtaaatga aaaggcaaga gagaaatttt atgaggctaa actacagcag caacagagag
     2881 agctcaaaca attgcaggaa gaaagaaaga aactgattga gattcaagag aaaattcaag
     2941 cattgcaaaa ggcatgtcct gacctacagc tgtcagccac tagtgcaggt aattgtccca
     3001 caaaaaaata tatgccagct gttacttcaa ccccaactgt taatgaaaat gaagccagta
     3061 caagcagatc tgcttttgaa cctgatgatc cttcagtggt agataatgag ttgtggtcag
     3121 aaatgcgaag acacgaaatg ttaagggaag agctgcgaca gagaagaaag cagcttgaag
     3181 ctttgatggc tgaacatcag aggaggcaag gtctggctga aactacatct ccagtggctg
     3241 tttcactgag aagtgatggg tctgagaacc tgtgtacgcc tcaacagagt agaacagaaa
     3301 aaacaatggc aacttgggga ggttctatcc agtgtgcact agatggagaa ggagatgaag
     3361 atggttacct ttctgaagca gttgttcgga cagatgaaga cgaggaggag gaggagcaag
     3421 acgccggctc ccatgatagc ttttccgtgt gtcctcctag cagcgcaaat cataactcct
     3481 ataatgtaaa ggaaactaaa aataggtgga agaacaatcg ccctttttca gcagatggaa
     3541 attatcgtcc tttagccagg acaagacaac agaatatcag catgcagcgt caggaaaacc
     3601 ttcgctgggt gtcagaactc tcttatgtag aagagaaaga acagtggcaa gaacaaatca
     3661 atcagctaaa gaaacaactt gatttcagtg tcagtatttg tcagactttg atgcaagacc
     3721 agcagactct gtcttgtctg ctacaaactc ttctcacggg cccttacagt gttatgccca
     3781 gcaatgttgc atctcctcaa gtacacctta taatgcacca gttgaaccag tgctacaccc
     3841 agctaacatg gcaacagaat aatgtacaaa ggttgaagca aacgctaaat gaacttatgc
     3901 gccaacaaaa tcatccagaa aaacctggaa gcaaggaaag agtcagtagt gcatcacacc
     3961 ctccttctcc cagtttattt tgtcctttca gctttccagc acagcctgta aatctgttca
     4021 acctaccggg gtttactaat ttttcatcat ttgcaccagg tatgaatttc agccctttat
     4081 ttccttctaa ttttggagat ttttctcaaa atatttctac acccactgaa cagcagcaac
     4141 cattagccca gaatctttca gggaaaacag aatacatggc ttttccaaaa ccttttgaaa
     4201 gtagttcttc tgttggagca gaaaaacaaa ggaatcaaaa acagcccgaa gaggaggtgg
     4261 agaacagtag gacaccatgg ttatatgacc aagaaggtga agtagaaaaa ccatttctca
     4321 agactggatg tgcagtgtct gtaaagaaaa caacaaatag taatcgcaaa aatcaattag
     4381 ataccagtag gagaagacgc caatttgatg aagagtcgtt agaaagcttt agcagtatgc
     4441 ctgacccagt agatccaaca acagtaacta aaacattcaa gtcaagaaaa gcatctgcac
     4501 aggccagcct ggcatctaaa gataaaactc ccaaatcaaa gagtaagaag aggcattcta
     4561 ctcagctgaa aagcagagtt aaaaatattg aaaccgggag tgatttttcc atgtttgaag
     4621 ctttgcggga taccatttat tctgaagtag ctacgttgat ttctcaaaat gaatctcgtc
     4681 cacattttct tattgaactc ttccatgaac ttcagctact gaatacagac tatttgagac
     4741 agagggcttt atatgccttg caggacatag tatccagaca tatttctgag aaccatgaaa
     4801 aagaagggga aaacgtaaag tcagtgaatt ctggtacttg gatagcatca aactcagaac
     4861 ttactcccag tgaaagcctt gctactactg atgatgaaac ttttgagaag aactttgaga
     4921 gagaaacaca taaaataagt gagcaaaatg atgctgataa tgctagtgtc acgtctgtat
     4981 cttcaaattt tgagcctttt gcaacagatg atctgggtaa cactgtgatt cacttagatc
     5041 aagcattagc cagaatgaga gaatatgagc gtatgaagac tgagactgaa agtaacacaa
     5101 atgtcagatg cacctgcagg attatagagg atgaggatgg tgctgctgcc ccgactacgg
     5161 ttgatagttt agaagtggaa actcctatta ttgaaaatca tagttcacag caatctgtaa
     5221 gtgaagtttc taccgtccca tgtcctagaa ttgatacaca gcaactggac cggcaaatta
     5281 aagcaattat gaaagaagtc attccctttt tgaaggagca catggatgaa gtatgctctt
     5341 ctcaacttct aacctcagta agacgcatgg ttttgactct tacccagcaa aacgatgaga
     5401 gcaaagagtt tgtaaagttc tttcataaac aacttggaag tatattacag gattcactgg
     5461 caaaatttgc tggcagaaaa ctgaaagatt gtggagaaga tcttcttgta gagatatctg
     5521 aagtgttatt taatgaattg gctttcttta aactcatgca agatttggat aataatagta
     5581 taactgttaa acagagatgc aaaaggaaaa ttgaagcagc tggagtgata cagtcttacg
     5641 caaaagaggc caaaaggatt cttgaaggag atcatggctc acctgctgga gaaattgatg
     5701 atgaagacaa agataaggat gagactgaaa cagttaaaca gagtcaaaca tctgaggttt
     5761 atgatggtga cggtcccaaa aatgtgagct ctgatgtctc tgatcaagag gaagatgaag
     5821 aaagtgaaga atgtccagtg tctattaatt tgtccaaagc tgaaactcag gctttgacta
     5881 attatggaag tggagaagat gagaatgaag atgaagaaat agaagaattt gaagagggac
     5941 ctgtagatgt ccagacttca ctgcaggcta acactgaaac tacagaagaa aatgaacatg
     6001 acgatcaggt tccacagcat gattttgaaa aatcagcgga aagcaaaaat gtcccatcag
     6061 aacaagaacc cactactagt aaagatgacc aagatagcac tcctgtgaag ccctgttacc
     6121 tcaatatctt ggaaaatgag caacctttaa acagcactgt ccaaaaggac gctcttacta
     6181 ccatcgattc atctaatcag cctaacgctt tgcctttacc tttaactgaa attgaaacct
     6241 tggtgcctag agtcaaagaa gttaaatccg cccaggaaac tcctgaaagc tctttggctg
     6301 gaagtcctga tactgaatct ccagtgttag tgaatgacta tgaagcagaa tctggtaaca
     6361 taagtcaaaa atctgatgaa gaagactttg tgaaagttga agatttacca cttaaactga
     6421 caatatattc agaggcagat ctaaggaaga aaatggtaga agaagaacag aaaaaccatt
     6481 tatctggtga aatattacgt gaaatgcaga ctgaagaact agctgggaat tctcagacac
     6541 taaaagaacc tgaaacagtg ggagcccaaa gtacatgaga tgtcttcaga ggctcatcta
     6601 actctcttta catagtcaat gcatatatgg aaatggcact aaataaacat ctgttttgat
     6661 ctgtaaaaaa tgtaaattag tttgacactg catttttggt aggtgtgcta atttctgccc
     6721 atggcagttt aaaacatcaa aaactgaatt ctggacagat tcaagccttg atacactgtg
     6781 gggttttttt ctttttcttt ctgtcatttt ttttggtctt gatttttttt ccccattgtg
     6841 atgtttggta acgttaaatt taaaatgtag ttttaaataa agtttggact taacctgtaa
     6901 actatctttt ttggaaatta tgttgaattc tatacagcaa gtcactgttc tgtataatta
     6961 ggctattcaa agagcaatgg tcaagagtta gagaaatata ctatttattg taaagcccag
     7021 cctttaggcc aggcttccaa ataatgccag tgttgctgct attgggtctc atgttctttt
     7081 agatacttgc atgtcttatt cctgtgcaag aatagggcag gttataaagg tttccaggtt
     7141 attgtagaat atatattaat attctattca aattggatga taagtttaga atacttgtcc
     7201 ttagtacgta gaacttacat aattatctat tagataaata ttttctagaa tttcaattca
     7261 tatctgtgtt gcctcagtct aaaagtaaaa aaaaaaaagt tttctataat tagtatttct
     7321 gcacagccaa gtaaagtaac attgtgatta attttaaaag gaaaaccaag atctttaaag
     7381 tagagattaa tagaactaaa tttatgtacc agcacattaa agttctatat gccttcggac
     7441 aaccttgcct tttgagatga tagtttagcc aaagcatagc agttgcttct gtatgcagtg
     7501 agagagaagc aggttcgcag aggaagtttt gagtaacgaa aatctacatg acctctttgt
     7561 catgaagtaa atcagcttct aaaggtggtg tagctttaga tcccaaactt gccacatacc
     7621 cagtaaggct tcacatagcc agttaacaat taagtcatct ttacagattc cttcttgaat
     7681 aaaatatgaa gaattgttcc aaatagtctt ttaagtttgt caacaattaa ctgaagtatc
     7741 ccataagaag agaatttggt tggtattcct ttgaaattct tgcctgatac ctcagtgtaa
     7801 aagtccagtc agggagtatt aaatgaggat ttccctatga gggcattgac tgtattgctc
     7861 cataacttaa attatgggag acatatatct ccaactttct gaattagtaa aacttattca
     7921 gaaaactgtc atcccagaaa caggaattct tattcaattg gcttgacttc agggaaactg
     7981 aaacataagt tacattatat gtatacttaa gttctgtatt tgttttctag actctgtaca
     8041 gaaacttcat tttgatactc aagccaagcc ttacatatta agactgtctg tctctctctc
     8101 tgcatgcatt ttaaagatcg atacagtgga agcgttgtac ttatacctta gttattactg
     8161 tagtatctgt gaaccgtatc aaacttgctt atttgactta tgttatagct gttgtaatat
     8221 ggtctgtttt tttctattat agtagataat ttagttttaa aatacctagg acttgagagc
     8281 agataacttg tttaatatgt ttttccctgg taactgttgc taaagggtta ggcattgaat
     8341 attactgttt gtcttcattt ttaagttaaa aatttggtta gagataaaag aggaagaaaa
     8401 ggtcaaaatg agtgagagag aaacctcgca ggttgaaata atgcctaaaa gagtgagctc
     8461 gccagactgt gcagcaggca ctctttgtat tttgtaacat tcactttggg taaatgcttt
     8521 ttcactgtta ataaatgtat atcctgcata ca
//
LOCUS       XM_032618262            8513 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X26, mRNA.
ACCESSION   XM_032618262
VERSION     XM_032618262.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8513
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8513
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 30 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6539
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X26"
                     /protein_id="XP_032474153.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARDPQQEPMEEIENL
                     KKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSI
                     TSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDE
                     KVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAP
                     SAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNE
                     LRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEV
                     NSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLADCRYNREQEQGIHVAQ
                     GEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDL
                     VALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKARE
                     KFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMP
                     AVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMA
                     EHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDG
                     YLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADG
                     NYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLM
                     QDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTL
                     NELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPG
                     MNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRN
                     QKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFD
                     EESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVK
                     NIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSE
                     TGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQD
                     IVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHKIS
                     EQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCT
                     CRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAI
                     MKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLA
                     KFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQS
                     YAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQE
                     EDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETT
                     EENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNST
                     VQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLV
                     NDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREM
                     QTEELAGNSQTLKEPETVGAQST"
     misc_feature    4557..6455
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgccagaga tcctcagcag gagcctatgg aagagataga aaatttgaag aaacaacacg
     1261 atttattaaa aaggatgtta cagcagcagg agcagctgag agctctgcag ggacgacaag
     1321 ctgctcttct tgctctgcag cataaggcag agcaagctat tgctgtgatg gatgattctg
     1381 ttgtaacaga aactacaggt agcctatctg gagtcagtat cacatctgaa ctaaatgaag
     1441 aattgaatga tttaattcag cgttttcata atcagcttcg tgattctcag cctccacctg
     1501 ttccagacaa tagaagacaa gcagaaagtc tttcattaac tagggaggtt tctcagagca
     1561 gaaatccatc agtttcagag catttacctg atgagaaagt ccagcttttt agcaaaatga
     1621 gagtgttaca agaaaagaaa caaaaaatgg acaagctgct tggagaactt catacacttc
     1681 gagatgagca tttgaacaat tcatcctttg tgccttcttc agcctcccca caaaggagtg
     1741 tggatcagag aagtacaacc gcagctccct ctgctcctgt aggcttaaca ccagttgtca
     1801 atggagaatc caatagcctc acatcatctg ttccttatcc tgctgcttct ctagtttctc
     1861 agaatcagag tgaaaatgaa ggccacctaa atccaactga aaaactccag aagttaaatg
     1921 aagttcgaaa gaggttgaat gagctaagag agttagttca ttattacgag caaacatcag
     1981 atatgatgac agatgctgta aatgaaaaca caaaagaaga agaaactgaa gagtcagaat
     2041 atgattccga gcatgaaaat tctgaacctg ttactaacat tcgaaatcca caagtagctg
     2101 ccacctggaa tgaagtaaat agtaattcta aggcacagtg tgtttctaat aatagagatg
     2161 ggagatcagt taattctaat tgtgaaatta acaacagatc tgctgccaac ataagggctc
     2221 taaacatgcc tccttcttta gcagattgtc gatacaatag agaacaagaa caggggattc
     2281 acgttgcaca aggtgaaggt gaggaggagg aagaggaaga agcagaagat gaggcagtca
     2341 gtggagcgtc attatctagt catcggagca gtctggttga tgagacgcct gaagatgctg
     2401 aatttgaaca gaagatcagc agacttatgg ctgcaaaaca gaaacttaga cagttacaag
     2461 atcttgttgc attggtgcag gatgatgata cagcagatca aggagttatc tctgccaata
     2521 cctcaaattt ggatgatttc tacccagcag aagaagacac caaacaaaat gcaaataaca
     2581 ctagaggaaa taccaataaa acacagaaag atgctggagt aaatgaaaag gcaagagaga
     2641 aattttatga ggctaaacta cagcagcaac agagagagct caaacaattg caggaagaaa
     2701 gaaagaaact gattgagatt caagagaaaa ttcaagcatt gcaaaaggca tgtcctgacc
     2761 tacagctgtc agccactagt gcaggtaatt gtcccacaaa aaaatatatg ccagctgtta
     2821 cttcaacccc aactgttaat gaaaatgaag ccagtacaag cagatctgct tttgaacctg
     2881 atgatccttc agtggtagat aatgagttgt ggtcagaaat gcgaagacac gaaatgttaa
     2941 gggaagagct gcgacagaga agaaagcagc ttgaagcttt gatggctgaa catcagagga
     3001 ggcaaggtct ggctgaaact acatctccag tggctgtttc actgagaagt gatgggtctg
     3061 agaacctgtg tacgcctcaa cagagtagaa cagaaaaaac aatggcaact tggggaggtt
     3121 ctatccagtg tgcactagat ggagaaggag atgaagatgg ttacctttct gaagcagttg
     3181 ttcggacaga tgaagacgag gaggaggagg agcaagacgc cggctcccat gatagctttt
     3241 ccgtgtgtcc tcctagcagc gcaaatcata actcctataa tgtaaaggaa actaaaaata
     3301 ggtggaagaa caatcgccct ttttcagcag atggaaatta tcgtccttta gccaggacaa
     3361 gacaacagaa tatcagcatg cagcgtcagg aaaaccttcg ctgggtgtca gaactctctt
     3421 atgtagaaga gaaagaacag tggcaagaac aaatcaatca gctaaagaaa caacttgatt
     3481 tcagtgtcag tatttgtcag actttgatgc aagaccagca gactctgtct tgtctgctac
     3541 aaactcttct cacgggccct tacagtgtta tgcccagcaa tgttgcatct cctcaagtac
     3601 accttataat gcaccagttg aaccagtgct acacccagct aacatggcaa cagaataatg
     3661 tacaaaggtt gaagcaaacg ctaaatgaac ttatgcgcca acaaaatcat ccagaaaaac
     3721 ctggaagcaa ggaaagagtc agtagtgcat cacaccctcc ttctcccagt ttattttgtc
     3781 ctttcagctt tccagcacag cctgtaaatc tgttcaacct accggggttt actaattttt
     3841 catcatttgc accaggtatg aatttcagcc ctttatttcc ttctaatttt ggagattttt
     3901 ctcaaaatat ttctacaccc actgaacagc agcaaccatt agcccagaat ctttcaggga
     3961 aaacagaata catggctttt ccaaaacctt ttgaaagtag ttcttctgtt ggagcagaaa
     4021 aacaaaggaa tcaaaaacag cccgaagagg aggtggagaa cagtaggaca ccatggttat
     4081 atgaccaaga aggtgaagta gaaaaaccat ttctcaagac tggatgtgca gtgtctgtaa
     4141 agaaaacaac aaatagtaat cgcaaaaatc aattagatac cagtaggaga agacgccaat
     4201 ttgatgaaga gtcgttagaa agctttagca gtatgcctga cccagtagat ccaacaacag
     4261 taactaaaac attcaagtca agaaaagcat ctgcacaggc cagcctggca tctaaagata
     4321 aaactcccaa atcaaagagt aagaagaggc attctactca gctgaaaagc agagttaaaa
     4381 atattgggta tgaaagtgcc agtatgtcta gcacatgtga accttgcaaa agtaggaaca
     4441 gacattcagc ccagactgaa gagcctgttc aagcaaaagt attcagcaga aagaatcatg
     4501 agcagctgga aaaagtacta agatatagta ggtctacaga aatgtcttca gaaaccggga
     4561 gtgatttttc catgtttgaa gctttgcggg ataccattta ttctgaagta gctacgttga
     4621 tttctcaaaa tgaatctcgt ccacattttc ttattgaact cttccatgaa cttcagctac
     4681 tgaatacaga ctatttgaga cagagggctt tatatgcctt gcaggacata gtatccagac
     4741 atatttctga gaaccatgaa aaagaagggg aaaacgtaaa gtcagtgaat tctggtactt
     4801 ggatagcatc aaactcagaa cttactccca gtgaaagcct tgctactact gatgatgaaa
     4861 cttttgagaa gaactttgag agagaaacac ataaaataag tgagcaaaat gatgctgata
     4921 atgctagtgt cacgtctgta tcttcaaatt ttgagccttt tgcaacagat gatctgggta
     4981 acactgtgat tcacttagat caagcattag ccagaatgag agaatatgag cgtatgaaga
     5041 ctgagactga aagtaacaca aatgtcagat gcacctgcag gattatagag gatgaggatg
     5101 gtgctgctgc cccgactacg gttgatagtt tagaagtgga aactcctatt attgaaaatc
     5161 atagttcaca gcaatctgta agtgaagttt ctaccgtccc atgtcctaga attgatacac
     5221 agcaactgga ccggcaaatt aaagcaatta tgaaagaagt cattcccttt ttgaaggagc
     5281 acatggatga agtatgctct tctcaacttc taacctcagt aagacgcatg gttttgactc
     5341 ttacccagca aaacgatgag agcaaagagt ttgtaaagtt ctttcataaa caacttggaa
     5401 gtatattaca ggattcactg gcaaaatttg ctggcagaaa actgaaagat tgtggagaag
     5461 atcttcttgt agagatatct gaagtgttat ttaatgaatt ggctttcttt aaactcatgc
     5521 aagatttgga taataatagt ataactgtta aacagagatg caaaaggaaa attgaagcag
     5581 ctggagtgat acagtcttac gcaaaagagg ccaaaaggat tcttgaagga gatcatggct
     5641 cacctgctgg agaaattgat gatgaagaca aagataagga tgagactgaa acagttaaac
     5701 agagtcaaac atctgaggtt tatgatggtg acggtcccaa aaatgtgagc tctgatgtct
     5761 ctgatcaaga ggaagatgaa gaaagtgaag aatgtccagt gtctattaat ttgtccaaag
     5821 ctgaaactca ggctttgact aattatggaa gtggagaaga tgagaatgaa gatgaagaaa
     5881 tagaagaatt tgaagaggga cctgtagatg tccagacttc actgcaggct aacactgaaa
     5941 ctacagaaga aaatgaacat gacgatcagg ttccacagca tgattttgaa aaatcagcgg
     6001 aaagcaaaaa tgtcccatca gaacaagaac ccactactag taaagatgac caagatagca
     6061 ctcctgtgaa gccctgttac ctcaatatct tggaaaatga gcaaccttta aacagcactg
     6121 tccaaaagga cgctcttact accatcgatt catctaatca gcctaacgct ttgcctttac
     6181 ctttaactga aattgaaacc ttggtgccta gagtcaaaga agttaaatcc gcccaggaaa
     6241 ctcctgaaag ctctttggct ggaagtcctg atactgaatc tccagtgtta gtgaatgact
     6301 atgaagcaga atctggtaac ataagtcaaa aatctgatga agaagacttt gtgaaagttg
     6361 aagatttacc acttaaactg acaatatatt cagaggcaga tctaaggaag aaaatggtag
     6421 aagaagaaca gaaaaaccat ttatctggtg aaatattacg tgaaatgcag actgaagaac
     6481 tagctgggaa ttctcagaca ctaaaagaac ctgaaacagt gggagcccaa agtacatgag
     6541 atgtcttcag aggctcatct aactctcttt acatagtcaa tgcatatatg gaaatggcac
     6601 taaataaaca tctgttttga tctgtaaaaa atgtaaatta gtttgacact gcatttttgg
     6661 taggtgtgct aatttctgcc catggcagtt taaaacatca aaaactgaat tctggacaga
     6721 ttcaagcctt gatacactgt ggggtttttt tctttttctt tctgtcattt tttttggtct
     6781 tgattttttt tccccattgt gatgtttggt aacgttaaat ttaaaatgta gttttaaata
     6841 aagtttggac ttaacctgta aactatcttt tttggaaatt atgttgaatt ctatacagca
     6901 agtcactgtt ctgtataatt aggctattca aagagcaatg gtcaagagtt agagaaatat
     6961 actatttatt gtaaagccca gcctttaggc caggcttcca aataatgcca gtgttgctgc
     7021 tattgggtct catgttcttt tagatacttg catgtcttat tcctgtgcaa gaatagggca
     7081 ggttataaag gtttccaggt tattgtagaa tatatattaa tattctattc aaattggatg
     7141 ataagtttag aatacttgtc cttagtacgt agaacttaca taattatcta ttagataaat
     7201 attttctaga atttcaattc atatctgtgt tgcctcagtc taaaagtaaa aaaaaaaaag
     7261 ttttctataa ttagtatttc tgcacagcca agtaaagtaa cattgtgatt aattttaaaa
     7321 ggaaaaccaa gatctttaaa gtagagatta atagaactaa atttatgtac cagcacatta
     7381 aagttctata tgccttcgga caaccttgcc ttttgagatg atagtttagc caaagcatag
     7441 cagttgcttc tgtatgcagt gagagagaag caggttcgca gaggaagttt tgagtaacga
     7501 aaatctacat gacctctttg tcatgaagta aatcagcttc taaaggtggt gtagctttag
     7561 atcccaaact tgccacatac ccagtaaggc ttcacatagc cagttaacaa ttaagtcatc
     7621 tttacagatt ccttcttgaa taaaatatga agaattgttc caaatagtct tttaagtttg
     7681 tcaacaatta actgaagtat cccataagaa gagaatttgg ttggtattcc tttgaaattc
     7741 ttgcctgata cctcagtgta aaagtccagt cagggagtat taaatgagga tttccctatg
     7801 agggcattga ctgtattgct ccataactta aattatggga gacatatatc tccaactttc
     7861 tgaattagta aaacttattc agaaaactgt catcccagaa acaggaattc ttattcaatt
     7921 ggcttgactt cagggaaact gaaacataag ttacattata tgtatactta agttctgtat
     7981 ttgttttcta gactctgtac agaaacttca ttttgatact caagccaagc cttacatatt
     8041 aagactgtct gtctctctct ctgcatgcat tttaaagatc gatacagtgg aagcgttgta
     8101 cttatacctt agttattact gtagtatctg tgaaccgtat caaacttgct tatttgactt
     8161 atgttatagc tgttgtaata tggtctgttt ttttctatta tagtagataa tttagtttta
     8221 aaatacctag gacttgagag cagataactt gtttaatatg tttttccctg gtaactgttg
     8281 ctaaagggtt aggcattgaa tattactgtt tgtcttcatt tttaagttaa aaatttggtt
     8341 agagataaaa gaggaagaaa aggtcaaaat gagtgagaga gaaacctcgc aggttgaaat
     8401 aatgcctaaa agagtgagct cgccagactg tgcagcaggc actctttgta ttttgtaaca
     8461 ttcactttgg gtaaatgctt tttcactgtt aataaatgta tatcctgcat aca
//
LOCUS       XM_032618263            8510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X27, mRNA.
ACCESSION   XM_032618263
VERSION     XM_032618263.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8510
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 30 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6536
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X27"
                     /protein_id="XP_032474154.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARDPQQEPMEEIENL
                     KKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSI
                     TSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDE
                     KVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAP
                     SAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNE
                     LRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEV
                     NSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLDCRYNREQEQGIHVAQG
                     EGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLV
                     ALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREK
                     FYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPA
                     VTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAE
                     HQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGY
                     LSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGN
                     YRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQ
                     DQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLN
                     ELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGM
                     NFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQ
                     KQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDE
                     ESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKN
                     IGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVLRYSRSTEMSSET
                     GSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDI
                     VSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHKISE
                     QNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTC
                     RIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIM
                     KEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAK
                     FAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSY
                     AKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEE
                     DEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTE
                     ENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTV
                     QKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVN
                     DYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQ
                     TEELAGNSQTLKEPETVGAQST"
     misc_feature    4554..6452
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgccagaga tcctcagcag gagcctatgg aagagataga aaatttgaag aaacaacacg
     1261 atttattaaa aaggatgtta cagcagcagg agcagctgag agctctgcag ggacgacaag
     1321 ctgctcttct tgctctgcag cataaggcag agcaagctat tgctgtgatg gatgattctg
     1381 ttgtaacaga aactacaggt agcctatctg gagtcagtat cacatctgaa ctaaatgaag
     1441 aattgaatga tttaattcag cgttttcata atcagcttcg tgattctcag cctccacctg
     1501 ttccagacaa tagaagacaa gcagaaagtc tttcattaac tagggaggtt tctcagagca
     1561 gaaatccatc agtttcagag catttacctg atgagaaagt ccagcttttt agcaaaatga
     1621 gagtgttaca agaaaagaaa caaaaaatgg acaagctgct tggagaactt catacacttc
     1681 gagatgagca tttgaacaat tcatcctttg tgccttcttc agcctcccca caaaggagtg
     1741 tggatcagag aagtacaacc gcagctccct ctgctcctgt aggcttaaca ccagttgtca
     1801 atggagaatc caatagcctc acatcatctg ttccttatcc tgctgcttct ctagtttctc
     1861 agaatcagag tgaaaatgaa ggccacctaa atccaactga aaaactccag aagttaaatg
     1921 aagttcgaaa gaggttgaat gagctaagag agttagttca ttattacgag caaacatcag
     1981 atatgatgac agatgctgta aatgaaaaca caaaagaaga agaaactgaa gagtcagaat
     2041 atgattccga gcatgaaaat tctgaacctg ttactaacat tcgaaatcca caagtagctg
     2101 ccacctggaa tgaagtaaat agtaattcta aggcacagtg tgtttctaat aatagagatg
     2161 ggagatcagt taattctaat tgtgaaatta acaacagatc tgctgccaac ataagggctc
     2221 taaacatgcc tccttcttta gattgtcgat acaatagaga acaagaacag gggattcacg
     2281 ttgcacaagg tgaaggtgag gaggaggaag aggaagaagc agaagatgag gcagtcagtg
     2341 gagcgtcatt atctagtcat cggagcagtc tggttgatga gacgcctgaa gatgctgaat
     2401 ttgaacagaa gatcagcaga cttatggctg caaaacagaa acttagacag ttacaagatc
     2461 ttgttgcatt ggtgcaggat gatgatacag cagatcaagg agttatctct gccaatacct
     2521 caaatttgga tgatttctac ccagcagaag aagacaccaa acaaaatgca aataacacta
     2581 gaggaaatac caataaaaca cagaaagatg ctggagtaaa tgaaaaggca agagagaaat
     2641 tttatgaggc taaactacag cagcaacaga gagagctcaa acaattgcag gaagaaagaa
     2701 agaaactgat tgagattcaa gagaaaattc aagcattgca aaaggcatgt cctgacctac
     2761 agctgtcagc cactagtgca ggtaattgtc ccacaaaaaa atatatgcca gctgttactt
     2821 caaccccaac tgttaatgaa aatgaagcca gtacaagcag atctgctttt gaacctgatg
     2881 atccttcagt ggtagataat gagttgtggt cagaaatgcg aagacacgaa atgttaaggg
     2941 aagagctgcg acagagaaga aagcagcttg aagctttgat ggctgaacat cagaggaggc
     3001 aaggtctggc tgaaactaca tctccagtgg ctgtttcact gagaagtgat gggtctgaga
     3061 acctgtgtac gcctcaacag agtagaacag aaaaaacaat ggcaacttgg ggaggttcta
     3121 tccagtgtgc actagatgga gaaggagatg aagatggtta cctttctgaa gcagttgttc
     3181 ggacagatga agacgaggag gaggaggagc aagacgccgg ctcccatgat agcttttccg
     3241 tgtgtcctcc tagcagcgca aatcataact cctataatgt aaaggaaact aaaaataggt
     3301 ggaagaacaa tcgccctttt tcagcagatg gaaattatcg tcctttagcc aggacaagac
     3361 aacagaatat cagcatgcag cgtcaggaaa accttcgctg ggtgtcagaa ctctcttatg
     3421 tagaagagaa agaacagtgg caagaacaaa tcaatcagct aaagaaacaa cttgatttca
     3481 gtgtcagtat ttgtcagact ttgatgcaag accagcagac tctgtcttgt ctgctacaaa
     3541 ctcttctcac gggcccttac agtgttatgc ccagcaatgt tgcatctcct caagtacacc
     3601 ttataatgca ccagttgaac cagtgctaca cccagctaac atggcaacag aataatgtac
     3661 aaaggttgaa gcaaacgcta aatgaactta tgcgccaaca aaatcatcca gaaaaacctg
     3721 gaagcaagga aagagtcagt agtgcatcac accctccttc tcccagttta ttttgtcctt
     3781 tcagctttcc agcacagcct gtaaatctgt tcaacctacc ggggtttact aatttttcat
     3841 catttgcacc aggtatgaat ttcagccctt tatttccttc taattttgga gatttttctc
     3901 aaaatatttc tacacccact gaacagcagc aaccattagc ccagaatctt tcagggaaaa
     3961 cagaatacat ggcttttcca aaaccttttg aaagtagttc ttctgttgga gcagaaaaac
     4021 aaaggaatca aaaacagccc gaagaggagg tggagaacag taggacacca tggttatatg
     4081 accaagaagg tgaagtagaa aaaccatttc tcaagactgg atgtgcagtg tctgtaaaga
     4141 aaacaacaaa tagtaatcgc aaaaatcaat tagataccag taggagaaga cgccaatttg
     4201 atgaagagtc gttagaaagc tttagcagta tgcctgaccc agtagatcca acaacagtaa
     4261 ctaaaacatt caagtcaaga aaagcatctg cacaggccag cctggcatct aaagataaaa
     4321 ctcccaaatc aaagagtaag aagaggcatt ctactcagct gaaaagcaga gttaaaaata
     4381 ttgggtatga aagtgccagt atgtctagca catgtgaacc ttgcaaaagt aggaacagac
     4441 attcagccca gactgaagag cctgttcaag caaaagtatt cagcagaaag aatcatgagc
     4501 agctggaaaa agtactaaga tatagtaggt ctacagaaat gtcttcagaa accgggagtg
     4561 atttttccat gtttgaagct ttgcgggata ccatttattc tgaagtagct acgttgattt
     4621 ctcaaaatga atctcgtcca cattttctta ttgaactctt ccatgaactt cagctactga
     4681 atacagacta tttgagacag agggctttat atgccttgca ggacatagta tccagacata
     4741 tttctgagaa ccatgaaaaa gaaggggaaa acgtaaagtc agtgaattct ggtacttgga
     4801 tagcatcaaa ctcagaactt actcccagtg aaagccttgc tactactgat gatgaaactt
     4861 ttgagaagaa ctttgagaga gaaacacata aaataagtga gcaaaatgat gctgataatg
     4921 ctagtgtcac gtctgtatct tcaaattttg agccttttgc aacagatgat ctgggtaaca
     4981 ctgtgattca cttagatcaa gcattagcca gaatgagaga atatgagcgt atgaagactg
     5041 agactgaaag taacacaaat gtcagatgca cctgcaggat tatagaggat gaggatggtg
     5101 ctgctgcccc gactacggtt gatagtttag aagtggaaac tcctattatt gaaaatcata
     5161 gttcacagca atctgtaagt gaagtttcta ccgtcccatg tcctagaatt gatacacagc
     5221 aactggaccg gcaaattaaa gcaattatga aagaagtcat tccctttttg aaggagcaca
     5281 tggatgaagt atgctcttct caacttctaa cctcagtaag acgcatggtt ttgactctta
     5341 cccagcaaaa cgatgagagc aaagagtttg taaagttctt tcataaacaa cttggaagta
     5401 tattacagga ttcactggca aaatttgctg gcagaaaact gaaagattgt ggagaagatc
     5461 ttcttgtaga gatatctgaa gtgttattta atgaattggc tttctttaaa ctcatgcaag
     5521 atttggataa taatagtata actgttaaac agagatgcaa aaggaaaatt gaagcagctg
     5581 gagtgataca gtcttacgca aaagaggcca aaaggattct tgaaggagat catggctcac
     5641 ctgctggaga aattgatgat gaagacaaag ataaggatga gactgaaaca gttaaacaga
     5701 gtcaaacatc tgaggtttat gatggtgacg gtcccaaaaa tgtgagctct gatgtctctg
     5761 atcaagagga agatgaagaa agtgaagaat gtccagtgtc tattaatttg tccaaagctg
     5821 aaactcaggc tttgactaat tatggaagtg gagaagatga gaatgaagat gaagaaatag
     5881 aagaatttga agagggacct gtagatgtcc agacttcact gcaggctaac actgaaacta
     5941 cagaagaaaa tgaacatgac gatcaggttc cacagcatga ttttgaaaaa tcagcggaaa
     6001 gcaaaaatgt cccatcagaa caagaaccca ctactagtaa agatgaccaa gatagcactc
     6061 ctgtgaagcc ctgttacctc aatatcttgg aaaatgagca acctttaaac agcactgtcc
     6121 aaaaggacgc tcttactacc atcgattcat ctaatcagcc taacgctttg cctttacctt
     6181 taactgaaat tgaaaccttg gtgcctagag tcaaagaagt taaatccgcc caggaaactc
     6241 ctgaaagctc tttggctgga agtcctgata ctgaatctcc agtgttagtg aatgactatg
     6301 aagcagaatc tggtaacata agtcaaaaat ctgatgaaga agactttgtg aaagttgaag
     6361 atttaccact taaactgaca atatattcag aggcagatct aaggaagaaa atggtagaag
     6421 aagaacagaa aaaccattta tctggtgaaa tattacgtga aatgcagact gaagaactag
     6481 ctgggaattc tcagacacta aaagaacctg aaacagtggg agcccaaagt acatgagatg
     6541 tcttcagagg ctcatctaac tctctttaca tagtcaatgc atatatggaa atggcactaa
     6601 ataaacatct gttttgatct gtaaaaaatg taaattagtt tgacactgca tttttggtag
     6661 gtgtgctaat ttctgcccat ggcagtttaa aacatcaaaa actgaattct ggacagattc
     6721 aagccttgat acactgtggg gtttttttct ttttctttct gtcatttttt ttggtcttga
     6781 ttttttttcc ccattgtgat gtttggtaac gttaaattta aaatgtagtt ttaaataaag
     6841 tttggactta acctgtaaac tatctttttt ggaaattatg ttgaattcta tacagcaagt
     6901 cactgttctg tataattagg ctattcaaag agcaatggtc aagagttaga gaaatatact
     6961 atttattgta aagcccagcc tttaggccag gcttccaaat aatgccagtg ttgctgctat
     7021 tgggtctcat gttcttttag atacttgcat gtcttattcc tgtgcaagaa tagggcaggt
     7081 tataaaggtt tccaggttat tgtagaatat atattaatat tctattcaaa ttggatgata
     7141 agtttagaat acttgtcctt agtacgtaga acttacataa ttatctatta gataaatatt
     7201 ttctagaatt tcaattcata tctgtgttgc ctcagtctaa aagtaaaaaa aaaaaagttt
     7261 tctataatta gtatttctgc acagccaagt aaagtaacat tgtgattaat tttaaaagga
     7321 aaaccaagat ctttaaagta gagattaata gaactaaatt tatgtaccag cacattaaag
     7381 ttctatatgc cttcggacaa ccttgccttt tgagatgata gtttagccaa agcatagcag
     7441 ttgcttctgt atgcagtgag agagaagcag gttcgcagag gaagttttga gtaacgaaaa
     7501 tctacatgac ctctttgtca tgaagtaaat cagcttctaa aggtggtgta gctttagatc
     7561 ccaaacttgc cacataccca gtaaggcttc acatagccag ttaacaatta agtcatcttt
     7621 acagattcct tcttgaataa aatatgaaga attgttccaa atagtctttt aagtttgtca
     7681 acaattaact gaagtatccc ataagaagag aatttggttg gtattccttt gaaattcttg
     7741 cctgatacct cagtgtaaaa gtccagtcag ggagtattaa atgaggattt ccctatgagg
     7801 gcattgactg tattgctcca taacttaaat tatgggagac atatatctcc aactttctga
     7861 attagtaaaa cttattcaga aaactgtcat cccagaaaca ggaattctta ttcaattggc
     7921 ttgacttcag ggaaactgaa acataagtta cattatatgt atacttaagt tctgtatttg
     7981 ttttctagac tctgtacaga aacttcattt tgatactcaa gccaagcctt acatattaag
     8041 actgtctgtc tctctctctg catgcatttt aaagatcgat acagtggaag cgttgtactt
     8101 ataccttagt tattactgta gtatctgtga accgtatcaa acttgcttat ttgacttatg
     8161 ttatagctgt tgtaatatgg tctgtttttt tctattatag tagataattt agttttaaaa
     8221 tacctaggac ttgagagcag ataacttgtt taatatgttt ttccctggta actgttgcta
     8281 aagggttagg cattgaatat tactgtttgt cttcattttt aagttaaaaa tttggttaga
     8341 gataaaagag gaagaaaagg tcaaaatgag tgagagagaa acctcgcagg ttgaaataat
     8401 gcctaaaaga gtgagctcgc cagactgtgc agcaggcact ctttgtattt tgtaacattc
     8461 actttgggta aatgcttttt cactgttaat aaatgtatat cctgcataca
//
LOCUS       XM_032618264            7231 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X28, mRNA.
ACCESSION   XM_032618264
VERSION     XM_032618264.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7231
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7231
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             566..6610
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X28"
                     /protein_id="XP_032474155.1"
                     /db_xref="GeneID:116746680"
                     /translation="MTQMSVPEQAELEKLKQRINFSDLDQRSIGSDSQGRATAANNKR
                     QLSENRKPFNFLPMQINTNKSKDAAVNPQKREMIGSAQCKELFASALSNDLLQNCQVS
                     EEDGRGEPAMESSQIVSRLVQIRDYITKASSMREDLVEKNERSANVERLTHLIDHLKE
                     QEKSYMKFLQKILARENEEEDVRTIDSAVGSGSVAESTSLNIDVQSEASDTTARDPQQ
                     EPMEEIENLKKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDSVVTET
                     TGSLSGVSITSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSRNP
                     SVSEHLPDEKVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQRSV
                     DQRSTTAAPSAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQKL
                     NEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIRNP
                     QVAATWNEVNSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLADCRYNRE
                     QEQGIHVAQGEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMAAK
                     QKLRQLQDLVALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQKD
                     AGVNEKAREKFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATSAG
                     NCPTKKYMPAVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQR
                     RKQLEALMAEHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQCA
                     LDGEGDEDGYLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRWK
                     NNRPFSADGNYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQLDF
                     SVSICQTLMQDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQN
                     NVQRLKQTLNELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPGF
                     TNFSSFAPGMNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESSS
                     SVGAEKQRNQKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQLD
                     TSRRRRQFDEESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKKRH
                     STQLKSRVKNIGYESASMSSTCEPCKSRNRHSAQTEEPVQAKVFSRKNHEQLEKVLRY
                     SRSTEMSSAHARRILQQSNRNACNEAPETGSDFSMFEALRDTIYSEVATLISQNESRP
                     HFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENVKSVNSGTWIASNS
                     ELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNFEPFATDDLGNTVI
                     HLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVDSLEVETPIIENHS
                     SQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLT
                     LTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVLFNELAFFK
                     LMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPAGEIDDEDKDKDET
                     ETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKAETQALTNYGSGED
                     ENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKSAESKNVPSEQEPT
                     TSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNALPLPLTEIETLVP
                     RVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEEDFVKVEDLPLKLT
                     IYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPEPSYSPRFPSLWV"
     misc_feature    4613..6511
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacaggat tggggtggcc aacagaagaa
      421 ggcaaataga tcatcagaaa agaataagaa aaagtttggt gtagaaagtg ataaaagggt
      481 aactaatgat atttctccgg agtcatcgcc aggagttgga aggcgaagaa cgaagactcc
      541 acatacattt ccgcatagta gatacatgac gcagatgtct gttcccgagc aggcagaatt
      601 agagaaactt aaacagcgga taaacttcag tgatttagat cagagaagca ttggaagtga
      661 ttctcaaggt agagcaacag ctgctaacaa caaacgtcag cttagtgaaa accgaaagcc
      721 cttcaacttt ttgcctatgc agattaatac taacaagagc aaagatgctg ctgtaaatcc
      781 tcaaaagaga gaaatgattg gatcagcaca atgtaaagag ttgtttgctt ctgctttaag
      841 taatgacctt ttgcaaaact gtcaagtctc tgaagaagat gggagaggag agcctgcaat
      901 ggagagcagc cagattgtaa gcaggcttgt tcagattcgt gactatatta ctaaagctag
      961 ttccatgcgg gaagatcttg tagagaaaaa tgaaagatct gctaatgttg agcgccttac
     1021 tcatctaata gatcacctta aagaacaaga aaagtcatat atgaaatttc tccaaaaaat
     1081 tcttgctaga gaaaatgagg aggaggatgt tcggactata gattcagctg tgggatctgg
     1141 ttctgtagct gagagcacat cgctaaacat agatgtgcag tctgaggctt cagataccac
     1201 ggccagagat cctcagcagg agcctatgga agagatagaa aatttgaaga aacaacacga
     1261 tttattaaaa aggatgttac agcagcagga gcagctgaga gctctgcagg gacgacaagc
     1321 tgctcttctt gctctgcagc ataaggcaga gcaagctatt gctgtgatgg atgattctgt
     1381 tgtaacagaa actacaggta gcctatctgg agtcagtatc acatctgaac taaatgaaga
     1441 attgaatgat ttaattcagc gttttcataa tcagcttcgt gattctcagc ctccacctgt
     1501 tccagacaat agaagacaag cagaaagtct ttcattaact agggaggttt ctcagagcag
     1561 aaatccatca gtttcagagc atttacctga tgagaaagtc cagcttttta gcaaaatgag
     1621 agtgttacaa gaaaagaaac aaaaaatgga caagctgctt ggagaacttc atacacttcg
     1681 agatgagcat ttgaacaatt catcctttgt gccttcttca gcctccccac aaaggagtgt
     1741 ggatcagaga agtacaaccg cagctccctc tgctcctgta ggcttaacac cagttgtcaa
     1801 tggagaatcc aatagcctca catcatctgt tccttatcct gctgcttctc tagtttctca
     1861 gaatcagagt gaaaatgaag gccacctaaa tccaactgaa aaactccaga agttaaatga
     1921 agttcgaaag aggttgaatg agctaagaga gttagttcat tattacgagc aaacatcaga
     1981 tatgatgaca gatgctgtaa atgaaaacac aaaagaagaa gaaactgaag agtcagaata
     2041 tgattccgag catgaaaatt ctgaacctgt tactaacatt cgaaatccac aagtagctgc
     2101 cacctggaat gaagtaaata gtaattctaa ggcacagtgt gtttctaata atagagatgg
     2161 gagatcagtt aattctaatt gtgaaattaa caacagatct gctgccaaca taagggctct
     2221 aaacatgcct ccttctttag cagattgtcg atacaataga gaacaagaac aggggattca
     2281 cgttgcacaa ggtgaaggtg aggaggagga agaggaagaa gcagaagatg aggcagtcag
     2341 tggagcgtca ttatctagtc atcggagcag tctggttgat gagacgcctg aagatgctga
     2401 atttgaacag aagatcagca gacttatggc tgcaaaacag aaacttagac agttacaaga
     2461 tcttgttgca ttggtgcagg atgatgatac agcagatcaa ggagttatct ctgccaatac
     2521 ctcaaatttg gatgatttct acccagcaga agaagacacc aaacaaaatg caaataacac
     2581 tagaggaaat accaataaaa cacagaaaga tgctggagta aatgaaaagg caagagagaa
     2641 attttatgag gctaaactac agcagcaaca gagagagctc aaacaattgc aggaagaaag
     2701 aaagaaactg attgagattc aagagaaaat tcaagcattg caaaaggcat gtcctgacct
     2761 acagctgtca gccactagtg caggtaattg tcccacaaaa aaatatatgc cagctgttac
     2821 ttcaacccca actgttaatg aaaatgaagc cagtacaagc agatctgctt ttgaacctga
     2881 tgatccttca gtggtagata atgagttgtg gtcagaaatg cgaagacacg aaatgttaag
     2941 ggaagagctg cgacagagaa gaaagcagct tgaagctttg atggctgaac atcagaggag
     3001 gcaaggtctg gctgaaacta catctccagt ggctgtttca ctgagaagtg atgggtctga
     3061 gaacctgtgt acgcctcaac agagtagaac agaaaaaaca atggcaactt ggggaggttc
     3121 tatccagtgt gcactagatg gagaaggaga tgaagatggt tacctttctg aagcagttgt
     3181 tcggacagat gaagacgagg aggaggagga gcaagacgcc ggctcccatg atagcttttc
     3241 cgtgtgtcct cctagcagcg caaatcataa ctcctataat gtaaaggaaa ctaaaaatag
     3301 gtggaagaac aatcgccctt tttcagcaga tggaaattat cgtcctttag ccaggacaag
     3361 acaacagaat atcagcatgc agcgtcagga aaaccttcgc tgggtgtcag aactctctta
     3421 tgtagaagag aaagaacagt ggcaagaaca aatcaatcag ctaaagaaac aacttgattt
     3481 cagtgtcagt atttgtcaga ctttgatgca agaccagcag actctgtctt gtctgctaca
     3541 aactcttctc acgggccctt acagtgttat gcccagcaat gttgcatctc ctcaagtaca
     3601 ccttataatg caccagttga accagtgcta cacccagcta acatggcaac agaataatgt
     3661 acaaaggttg aagcaaacgc taaatgaact tatgcgccaa caaaatcatc cagaaaaacc
     3721 tggaagcaag gaaagagtca gtagtgcatc acaccctcct tctcccagtt tattttgtcc
     3781 tttcagcttt ccagcacagc ctgtaaatct gttcaaccta ccggggttta ctaatttttc
     3841 atcatttgca ccaggtatga atttcagccc tttatttcct tctaattttg gagatttttc
     3901 tcaaaatatt tctacaccca ctgaacagca gcaaccatta gcccagaatc tttcagggaa
     3961 aacagaatac atggcttttc caaaaccttt tgaaagtagt tcttctgttg gagcagaaaa
     4021 acaaaggaat caaaaacagc ccgaagagga ggtggagaac agtaggacac catggttata
     4081 tgaccaagaa ggtgaagtag aaaaaccatt tctcaagact ggatgtgcag tgtctgtaaa
     4141 gaaaacaaca aatagtaatc gcaaaaatca attagatacc agtaggagaa gacgccaatt
     4201 tgatgaagag tcgttagaaa gctttagcag tatgcctgac ccagtagatc caacaacagt
     4261 aactaaaaca ttcaagtcaa gaaaagcatc tgcacaggcc agcctggcat ctaaagataa
     4321 aactcccaaa tcaaagagta agaagaggca ttctactcag ctgaaaagca gagttaaaaa
     4381 tattgggtat gaaagtgcca gtatgtctag cacatgtgaa ccttgcaaaa gtaggaacag
     4441 acattcagcc cagactgaag agcctgttca agcaaaagta ttcagcagaa agaatcatga
     4501 gcagctggaa aaagtactaa gatatagtag gtctacagaa atgtcttcag cacatgctag
     4561 gagaatacta cagcaatcta acagaaatgc atgcaatgaa gcgccagaaa ccgggagtga
     4621 tttttccatg tttgaagctt tgcgggatac catttattct gaagtagcta cgttgatttc
     4681 tcaaaatgaa tctcgtccac attttcttat tgaactcttc catgaacttc agctactgaa
     4741 tacagactat ttgagacaga gggctttata tgccttgcag gacatagtat ccagacatat
     4801 ttctgagaac catgaaaaag aaggggaaaa cgtaaagtca gtgaattctg gtacttggat
     4861 agcatcaaac tcagaactta ctcccagtga aagccttgct actactgatg atgaaacttt
     4921 tgagaagaac tttgagagag aaacacataa aataagtgag caaaatgatg ctgataatgc
     4981 tagtgtcacg tctgtatctt caaattttga gccttttgca acagatgatc tgggtaacac
     5041 tgtgattcac ttagatcaag cattagccag aatgagagaa tatgagcgta tgaagactga
     5101 gactgaaagt aacacaaatg tcagatgcac ctgcaggatt atagaggatg aggatggtgc
     5161 tgctgccccg actacggttg atagtttaga agtggaaact cctattattg aaaatcatag
     5221 ttcacagcaa tctgtaagtg aagtttctac cgtcccatgt cctagaattg atacacagca
     5281 actggaccgg caaattaaag caattatgaa agaagtcatt ccctttttga aggagcacat
     5341 ggatgaagta tgctcttctc aacttctaac ctcagtaaga cgcatggttt tgactcttac
     5401 ccagcaaaac gatgagagca aagagtttgt aaagttcttt cataaacaac ttggaagtat
     5461 attacaggat tcactggcaa aatttgctgg cagaaaactg aaagattgtg gagaagatct
     5521 tcttgtagag atatctgaag tgttatttaa tgaattggct ttctttaaac tcatgcaaga
     5581 tttggataat aatagtataa ctgttaaaca gagatgcaaa aggaaaattg aagcagctgg
     5641 agtgatacag tcttacgcaa aagaggccaa aaggattctt gaaggagatc atggctcacc
     5701 tgctggagaa attgatgatg aagacaaaga taaggatgag actgaaacag ttaaacagag
     5761 tcaaacatct gaggtttatg atggtgacgg tcccaaaaat gtgagctctg atgtctctga
     5821 tcaagaggaa gatgaagaaa gtgaagaatg tccagtgtct attaatttgt ccaaagctga
     5881 aactcaggct ttgactaatt atggaagtgg agaagatgag aatgaagatg aagaaataga
     5941 agaatttgaa gagggacctg tagatgtcca gacttcactg caggctaaca ctgaaactac
     6001 agaagaaaat gaacatgacg atcaggttcc acagcatgat tttgaaaaat cagcggaaag
     6061 caaaaatgtc ccatcagaac aagaacccac tactagtaaa gatgaccaag atagcactcc
     6121 tgtgaagccc tgttacctca atatcttgga aaatgagcaa cctttaaaca gcactgtcca
     6181 aaaggacgct cttactacca tcgattcatc taatcagcct aacgctttgc ctttaccttt
     6241 aactgaaatt gaaaccttgg tgcctagagt caaagaagtt aaatccgccc aggaaactcc
     6301 tgaaagctct ttggctggaa gtcctgatac tgaatctcca gtgttagtga atgactatga
     6361 agcagaatct ggtaacataa gtcaaaaatc tgatgaagaa gactttgtga aagttgaaga
     6421 tttaccactt aaactgacaa tatattcaga ggcagatcta aggaagaaaa tggtagaaga
     6481 agaacagaaa aaccatttat ctggtgaaat attacgtgaa atgcagactg aagaactagc
     6541 tgggaattct cagacactaa aagaacctga gccaagttat agtcccagat ttccttcttt
     6601 atgggtctaa tagcacaacc caagggccac tcggaggagc acatttcttg catcaaggtc
     6661 aaagattttc tttttgttca tcaattcatc agctgattaa actcatataa gattttttgt
     6721 tttttttaag aaatagggtg aagagaagtg caaaccaaat gtcaaacctt cagttaattc
     6781 ctcactcttc agcccatttc tgcctgttag gactcagttg gtaccctctg cactgccgcc
     6841 tgtcctagtg tgtctaggct gcagcttcct cccctcttct ctgtgcctcc atctcctttg
     6901 agcatcctgg gaacttgttg tggttcgcca tcctctgttc tctcacagcc actcttcttc
     6961 tgttctgggt ttattcattt ttatacttct tttctttttt ttttctagtg gggctttctt
     7021 ttggagagag aggaagtatc tgcttagtct gccgtcttaa aatggaaacc cttacctgtg
     7081 ccttttaaac tcttgctgtg tgttaccagg gaattattgt agcaaactaa gtttcttttg
     7141 taataacttt atattagaaa tgaaagtttt aatggaagag agcagtatta aactaaattc
     7201 tataaggtct taacttagta agtaatttat a
//
LOCUS       XM_032618265            8475 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X29, mRNA.
ACCESSION   XM_032618265
VERSION     XM_032618265.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8475
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8475
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 26 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             430..6501
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X29"
                     /protein_id="XP_032474156.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSITSELNEELNDLIQRFHNQL
                     RDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMD
                     KLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTS
                     SVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAV
                     NENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVN
                     SNCEINNRSAANIRALNMPPSLADCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGA
                     SLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGVISANT
                     SNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQE
                     ERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSA
                     FEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSPVAVSL
                     RSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQD
                     AGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQE
                     NLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYS
                     VMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERV
                     SSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNIS
                     TPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQ
                     EGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTV
                     TKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKNIETGSDFSMFEALRDTIY
                     SEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGEN
                     VKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSN
                     FEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTV
                     DSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVC
                     SSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLV
                     EISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSP
                     AGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSK
                     AETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEK
                     SAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPN
                     ALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDE
                     EDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPE
                     TVGAQST"
     misc_feature    4519..6417
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 ctccagtcta gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc
       61 ggccgttgcc gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc
      121 gcccctcttc tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc
      181 gagtaggtga tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact
      241 ctccctgctg tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg
      301 ctactccgcc cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa
      361 acaggaaagg agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata
      421 aaagccagta tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta
      481 ccaaactgga gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa
      541 cagaagaagg caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat
      601 aaaagggtaa ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg
      661 aagactccac atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag
      721 gcagaattag agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt
      781 ggaagtgatt ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac
      841 cgaaagccct tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct
      901 gtaaatcctc aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct
      961 gctttaagta atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag
     1021 cctgcaatgg agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact
     1081 aaagctagtt ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag
     1141 cgccttactc atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc
     1201 caaaaaattc ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg
     1261 ggatctggtt ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca
     1321 gataccacgg ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa
     1381 caacacgatt tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga
     1441 cgacaagctg ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat
     1501 gattctgttg taacagaaac tacaggtagc ctatctggag tcagtatcac atctgaacta
     1561 aatgaagaat tgaatgattt aattcagcgt tttcataatc agcttcgtga ttctcagcct
     1621 ccacctgttc cagacaatag aagacaagca gaaagtcttt cattaactag ggaggtttct
     1681 cagagcagaa atccatcagt ttcagagcat ttacctgatg agaaagtcca gctttttagc
     1741 aaaatgagag tgttacaaga aaagaaacaa aaaatggaca agctgcttgg agaacttcat
     1801 acacttcgag atgagcattt gaacaattca tcctttgtgc cttcttcagc ctccccacaa
     1861 aggagtgtgg atcagagaag tacaaccgca gctccctctg ctcctgtagg cttaacacca
     1921 gttgtcaatg gagaatccaa tagcctcaca tcatctgttc cttatcctgc tgcttctcta
     1981 gtttctcaga atcagagtga aaatgaaggc cacctaaatc caactgaaaa actccagaag
     2041 ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt tagttcatta ttacgagcaa
     2101 acatcagata tgatgacaga tgctgtaaat gaaaacacaa aagaagaaga aactgaagag
     2161 tcagaatatg attccgagca tgaaaattct gaacctgtta ctaacattcg aaatccacaa
     2221 gtagctgcca cctggaatga agtaaatagt aattctaagg cacagtgtgt ttctaataat
     2281 agagatggga gatcagttaa ttctaattgt gaaattaaca acagatctgc tgccaacata
     2341 agggctctaa acatgcctcc ttctttagca gattgtcgat acaatagaga acaagaacag
     2401 gggattcacg ttgcacaagg tgaaggtgag gaggaggaag aggaagaagc agaagatgag
     2461 gcagtcagtg gagcgtcatt atctagtcat cggagcagtc tggttgatga gacgcctgaa
     2521 gatgctgaat ttgaacagaa gatcagcaga cttatggctg caaaacagaa acttagacag
     2581 ttacaagatc ttgttgcatt ggtgcaggat gatgatacag cagatcaagg agttatctct
     2641 gccaatacct caaatttgga tgatttctac ccagcagaag aagacaccaa acaaaatgca
     2701 aataacacta gaggaaatac caataaaaca cagaaagatg ctggagtaaa tgaaaaggca
     2761 agagagaaat tttatgaggc taaactacag cagcaacaga gagagctcaa acaattgcag
     2821 gaagaaagaa agaaactgat tgagattcaa gagaaaattc aagcattgca aaaggcatgt
     2881 cctgacctac agctgtcagc cactagtgca ggtaattgtc ccacaaaaaa atatatgcca
     2941 gctgttactt caaccccaac tgttaatgaa aatgaagcca gtacaagcag atctgctttt
     3001 gaacctgatg atccttcagt ggtagataat gagttgtggt cagaaatgcg aagacacgaa
     3061 atgttaaggg aagagctgcg acagagaaga aagcagcttg aagctttgat ggctgaacat
     3121 cagaggaggc aaggtctggc tgaaactaca tctccagtgg ctgtttcact gagaagtgat
     3181 gggtctgaga acctgtgtac gcctcaacag agtagaacag aaaaaacaat ggcaacttgg
     3241 ggaggttcta tccagtgtgc actagatgga gaaggagatg aagatggtta cctttctgaa
     3301 gcagttgttc ggacagatga agacgaggag gaggaggagc aagacgccgg ctcccatgat
     3361 agcttttccg tgtgtcctcc tagcagcgca aatcataact cctataatgt aaaggaaact
     3421 aaaaataggt ggaagaacaa tcgccctttt tcagcagatg gaaattatcg tcctttagcc
     3481 aggacaagac aacagaatat cagcatgcag cgtcaggaaa accttcgctg ggtgtcagaa
     3541 ctctcttatg tagaagagaa agaacagtgg caagaacaaa tcaatcagct aaagaaacaa
     3601 cttgatttca gtgtcagtat ttgtcagact ttgatgcaag accagcagac tctgtcttgt
     3661 ctgctacaaa ctcttctcac gggcccttac agtgttatgc ccagcaatgt tgcatctcct
     3721 caagtacacc ttataatgca ccagttgaac cagtgctaca cccagctaac atggcaacag
     3781 aataatgtac aaaggttgaa gcaaacgcta aatgaactta tgcgccaaca aaatcatcca
     3841 gaaaaacctg gaagcaagga aagagtcagt agtgcatcac accctccttc tcccagttta
     3901 ttttgtcctt tcagctttcc agcacagcct gtaaatctgt tcaacctacc ggggtttact
     3961 aatttttcat catttgcacc aggtatgaat ttcagccctt tatttccttc taattttgga
     4021 gatttttctc aaaatatttc tacacccact gaacagcagc aaccattagc ccagaatctt
     4081 tcagggaaaa cagaatacat ggcttttcca aaaccttttg aaagtagttc ttctgttgga
     4141 gcagaaaaac aaaggaatca aaaacagccc gaagaggagg tggagaacag taggacacca
     4201 tggttatatg accaagaagg tgaagtagaa aaaccatttc tcaagactgg atgtgcagtg
     4261 tctgtaaaga aaacaacaaa tagtaatcgc aaaaatcaat tagataccag taggagaaga
     4321 cgccaatttg atgaagagtc gttagaaagc tttagcagta tgcctgaccc agtagatcca
     4381 acaacagtaa ctaaaacatt caagtcaaga aaagcatctg cacaggccag cctggcatct
     4441 aaagataaaa ctcccaaatc aaagagtaag aagaggcatt ctactcagct gaaaagcaga
     4501 gttaaaaata ttgaaaccgg gagtgatttt tccatgtttg aagctttgcg ggataccatt
     4561 tattctgaag tagctacgtt gatttctcaa aatgaatctc gtccacattt tcttattgaa
     4621 ctcttccatg aacttcagct actgaataca gactatttga gacagagggc tttatatgcc
     4681 ttgcaggaca tagtatccag acatatttct gagaaccatg aaaaagaagg ggaaaacgta
     4741 aagtcagtga attctggtac ttggatagca tcaaactcag aacttactcc cagtgaaagc
     4801 cttgctacta ctgatgatga aacttttgag aagaactttg agagagaaac acataaaata
     4861 agtgagcaaa atgatgctga taatgctagt gtcacgtctg tatcttcaaa ttttgagcct
     4921 tttgcaacag atgatctggg taacactgtg attcacttag atcaagcatt agccagaatg
     4981 agagaatatg agcgtatgaa gactgagact gaaagtaaca caaatgtcag atgcacctgc
     5041 aggattatag aggatgagga tggtgctgct gccccgacta cggttgatag tttagaagtg
     5101 gaaactccta ttattgaaaa tcatagttca cagcaatctg taagtgaagt ttctaccgtc
     5161 ccatgtccta gaattgatac acagcaactg gaccggcaaa ttaaagcaat tatgaaagaa
     5221 gtcattccct ttttgaagga gcacatggat gaagtatgct cttctcaact tctaacctca
     5281 gtaagacgca tggttttgac tcttacccag caaaacgatg agagcaaaga gtttgtaaag
     5341 ttctttcata aacaacttgg aagtatatta caggattcac tggcaaaatt tgctggcaga
     5401 aaactgaaag attgtggaga agatcttctt gtagagatat ctgaagtgtt atttaatgaa
     5461 ttggctttct ttaaactcat gcaagatttg gataataata gtataactgt taaacagaga
     5521 tgcaaaagga aaattgaagc agctggagtg atacagtctt acgcaaaaga ggccaaaagg
     5581 attcttgaag gagatcatgg ctcacctgct ggagaaattg atgatgaaga caaagataag
     5641 gatgagactg aaacagttaa acagagtcaa acatctgagg tttatgatgg tgacggtccc
     5701 aaaaatgtga gctctgatgt ctctgatcaa gaggaagatg aagaaagtga agaatgtcca
     5761 gtgtctatta atttgtccaa agctgaaact caggctttga ctaattatgg aagtggagaa
     5821 gatgagaatg aagatgaaga aatagaagaa tttgaagagg gacctgtaga tgtccagact
     5881 tcactgcagg ctaacactga aactacagaa gaaaatgaac atgacgatca ggttccacag
     5941 catgattttg aaaaatcagc ggaaagcaaa aatgtcccat cagaacaaga acccactact
     6001 agtaaagatg accaagatag cactcctgtg aagccctgtt acctcaatat cttggaaaat
     6061 gagcaacctt taaacagcac tgtccaaaag gacgctctta ctaccatcga ttcatctaat
     6121 cagcctaacg ctttgccttt acctttaact gaaattgaaa ccttggtgcc tagagtcaaa
     6181 gaagttaaat ccgcccagga aactcctgaa agctctttgg ctggaagtcc tgatactgaa
     6241 tctccagtgt tagtgaatga ctatgaagca gaatctggta acataagtca aaaatctgat
     6301 gaagaagact ttgtgaaagt tgaagattta ccacttaaac tgacaatata ttcagaggca
     6361 gatctaagga agaaaatggt agaagaagaa cagaaaaacc atttatctgg tgaaatatta
     6421 cgtgaaatgc agactgaaga actagctggg aattctcaga cactaaaaga acctgaaaca
     6481 gtgggagccc aaagtacatg agatgtcttc agaggctcat ctaactctct ttacatagtc
     6541 aatgcatata tggaaatggc actaaataaa catctgtttt gatctgtaaa aaatgtaaat
     6601 tagtttgaca ctgcattttt ggtaggtgtg ctaatttctg cccatggcag tttaaaacat
     6661 caaaaactga attctggaca gattcaagcc ttgatacact gtggggtttt tttctttttc
     6721 tttctgtcat tttttttggt cttgattttt tttccccatt gtgatgtttg gtaacgttaa
     6781 atttaaaatg tagttttaaa taaagtttgg acttaacctg taaactatct tttttggaaa
     6841 ttatgttgaa ttctatacag caagtcactg ttctgtataa ttaggctatt caaagagcaa
     6901 tggtcaagag ttagagaaat atactattta ttgtaaagcc cagcctttag gccaggcttc
     6961 caaataatgc cagtgttgct gctattgggt ctcatgttct tttagatact tgcatgtctt
     7021 attcctgtgc aagaataggg caggttataa aggtttccag gttattgtag aatatatatt
     7081 aatattctat tcaaattgga tgataagttt agaatacttg tccttagtac gtagaactta
     7141 cataattatc tattagataa atattttcta gaatttcaat tcatatctgt gttgcctcag
     7201 tctaaaagta aaaaaaaaaa agttttctat aattagtatt tctgcacagc caagtaaagt
     7261 aacattgtga ttaattttaa aaggaaaacc aagatcttta aagtagagat taatagaact
     7321 aaatttatgt accagcacat taaagttcta tatgccttcg gacaaccttg ccttttgaga
     7381 tgatagttta gccaaagcat agcagttgct tctgtatgca gtgagagaga agcaggttcg
     7441 cagaggaagt tttgagtaac gaaaatctac atgacctctt tgtcatgaag taaatcagct
     7501 tctaaaggtg gtgtagcttt agatcccaaa cttgccacat acccagtaag gcttcacata
     7561 gccagttaac aattaagtca tctttacaga ttccttcttg aataaaatat gaagaattgt
     7621 tccaaatagt cttttaagtt tgtcaacaat taactgaagt atcccataag aagagaattt
     7681 ggttggtatt cctttgaaat tcttgcctga tacctcagtg taaaagtcca gtcagggagt
     7741 attaaatgag gatttcccta tgagggcatt gactgtattg ctccataact taaattatgg
     7801 gagacatata tctccaactt tctgaattag taaaacttat tcagaaaact gtcatcccag
     7861 aaacaggaat tcttattcaa ttggcttgac ttcagggaaa ctgaaacata agttacatta
     7921 tatgtatact taagttctgt atttgttttc tagactctgt acagaaactt cattttgata
     7981 ctcaagccaa gccttacata ttaagactgt ctgtctctct ctctgcatgc attttaaaga
     8041 tcgatacagt ggaagcgttg tacttatacc ttagttatta ctgtagtatc tgtgaaccgt
     8101 atcaaacttg cttatttgac ttatgttata gctgttgtaa tatggtctgt ttttttctat
     8161 tatagtagat aatttagttt taaaatacct aggacttgag agcagataac ttgtttaata
     8221 tgtttttccc tggtaactgt tgctaaaggg ttaggcattg aatattactg tttgtcttca
     8281 tttttaagtt aaaaatttgg ttagagataa aagaggaaga aaaggtcaaa atgagtgaga
     8341 gagaaacctc gcaggttgaa ataatgccta aaagagtgag ctcgccagac tgtgcagcag
     8401 gcactctttg tattttgtaa cattcacttt gggtaaatgc tttttcactg ttaataaatg
     8461 tatatcctgc ataca
//
LOCUS       XM_032618266            8472 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X30, mRNA.
ACCESSION   XM_032618266
VERSION     XM_032618266.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8472
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8472
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 29 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             430..6498
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X30"
                     /protein_id="XP_032474157.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARENEEEDVRTIDSA
                     VGSGSVAESTSLNIDVQSEASDTTARDPQQEPMEEIENLKKQHDLLKRMLQQQEQLRA
                     LQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSITSELNEELNDLIQRFHNQL
                     RDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDEKVQLFSKMRVLQEKKQKMD
                     KLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAPSAPVGLTPVVNGESNSLTS
                     SVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAV
                     NENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEVNSNSKAQCVSNNRDGRSVN
                     SNCEINNRSAANIRALNMPPSLDCRYNREQEQGIHVAQGEGEEEEEEEAEDEAVSGAS
                     LSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLVALVQDDDTADQGVISANTS
                     NLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREKFYEAKLQQQQRELKQLQEE
                     RKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPAVTSTPTVNENEASTSRSAF
                     EPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAEHQRRQGLAETTSPVAVSLR
                     SDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGYLSEAVVRTDEDEEEEEQDA
                     GSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGNYRPLARTRQQNISMQRQEN
                     LRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQDQQTLSCLLQTLLTGPYSV
                     MPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLNELMRQQNHPEKPGSKERVS
                     SASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGMNFSPLFPSNFGDFSQNIST
                     PTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQKQPEEEVENSRTPWLYDQE
                     GEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDEESLESFSSMPDPVDPTTVT
                     KTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKNIETGSDFSMFEALRDTIYS
                     EVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYALQDIVSRHISENHEKEGENV
                     KSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHKISEQNDADNASVTSVSSNF
                     EPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVRCTCRIIEDEDGAAAPTTVD
                     SLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCS
                     SQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVE
                     ISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVIQSYAKEAKRILEGDHGSPA
                     GEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSDQEEDEESEECPVSINLSKA
                     ETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTETTEENEHDDQVPQHDFEKS
                     AESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLNSTVQKDALTTIDSSNQPNA
                     LPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKSDEE
                     DFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILREMQTEELAGNSQTLKEPET
                     VGAQST"
     misc_feature    4516..6414
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 ctccagtcta gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc
       61 ggccgttgcc gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc
      121 gcccctcttc tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc
      181 gagtaggtga tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact
      241 ctccctgctg tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg
      301 ctactccgcc cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa
      361 acaggaaagg agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata
      421 aaagccagta tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta
      481 ccaaactgga gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa
      541 cagaagaagg caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat
      601 aaaagggtaa ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg
      661 aagactccac atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag
      721 gcagaattag agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt
      781 ggaagtgatt ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac
      841 cgaaagccct tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct
      901 gtaaatcctc aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct
      961 gctttaagta atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag
     1021 cctgcaatgg agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact
     1081 aaagctagtt ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag
     1141 cgccttactc atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc
     1201 caaaaaattc ttgctagaga aaatgaggag gaggatgttc ggactataga ttcagctgtg
     1261 ggatctggtt ctgtagctga gagcacatcg ctaaacatag atgtgcagtc tgaggcttca
     1321 gataccacgg ccagagatcc tcagcaggag cctatggaag agatagaaaa tttgaagaaa
     1381 caacacgatt tattaaaaag gatgttacag cagcaggagc agctgagagc tctgcaggga
     1441 cgacaagctg ctcttcttgc tctgcagcat aaggcagagc aagctattgc tgtgatggat
     1501 gattctgttg taacagaaac tacaggtagc ctatctggag tcagtatcac atctgaacta
     1561 aatgaagaat tgaatgattt aattcagcgt tttcataatc agcttcgtga ttctcagcct
     1621 ccacctgttc cagacaatag aagacaagca gaaagtcttt cattaactag ggaggtttct
     1681 cagagcagaa atccatcagt ttcagagcat ttacctgatg agaaagtcca gctttttagc
     1741 aaaatgagag tgttacaaga aaagaaacaa aaaatggaca agctgcttgg agaacttcat
     1801 acacttcgag atgagcattt gaacaattca tcctttgtgc cttcttcagc ctccccacaa
     1861 aggagtgtgg atcagagaag tacaaccgca gctccctctg ctcctgtagg cttaacacca
     1921 gttgtcaatg gagaatccaa tagcctcaca tcatctgttc cttatcctgc tgcttctcta
     1981 gtttctcaga atcagagtga aaatgaaggc cacctaaatc caactgaaaa actccagaag
     2041 ttaaatgaag ttcgaaagag gttgaatgag ctaagagagt tagttcatta ttacgagcaa
     2101 acatcagata tgatgacaga tgctgtaaat gaaaacacaa aagaagaaga aactgaagag
     2161 tcagaatatg attccgagca tgaaaattct gaacctgtta ctaacattcg aaatccacaa
     2221 gtagctgcca cctggaatga agtaaatagt aattctaagg cacagtgtgt ttctaataat
     2281 agagatggga gatcagttaa ttctaattgt gaaattaaca acagatctgc tgccaacata
     2341 agggctctaa acatgcctcc ttctttagat tgtcgataca atagagaaca agaacagggg
     2401 attcacgttg cacaaggtga aggtgaggag gaggaagagg aagaagcaga agatgaggca
     2461 gtcagtggag cgtcattatc tagtcatcgg agcagtctgg ttgatgagac gcctgaagat
     2521 gctgaatttg aacagaagat cagcagactt atggctgcaa aacagaaact tagacagtta
     2581 caagatcttg ttgcattggt gcaggatgat gatacagcag atcaaggagt tatctctgcc
     2641 aatacctcaa atttggatga tttctaccca gcagaagaag acaccaaaca aaatgcaaat
     2701 aacactagag gaaataccaa taaaacacag aaagatgctg gagtaaatga aaaggcaaga
     2761 gagaaatttt atgaggctaa actacagcag caacagagag agctcaaaca attgcaggaa
     2821 gaaagaaaga aactgattga gattcaagag aaaattcaag cattgcaaaa ggcatgtcct
     2881 gacctacagc tgtcagccac tagtgcaggt aattgtccca caaaaaaata tatgccagct
     2941 gttacttcaa ccccaactgt taatgaaaat gaagccagta caagcagatc tgcttttgaa
     3001 cctgatgatc cttcagtggt agataatgag ttgtggtcag aaatgcgaag acacgaaatg
     3061 ttaagggaag agctgcgaca gagaagaaag cagcttgaag ctttgatggc tgaacatcag
     3121 aggaggcaag gtctggctga aactacatct ccagtggctg tttcactgag aagtgatggg
     3181 tctgagaacc tgtgtacgcc tcaacagagt agaacagaaa aaacaatggc aacttgggga
     3241 ggttctatcc agtgtgcact agatggagaa ggagatgaag atggttacct ttctgaagca
     3301 gttgttcgga cagatgaaga cgaggaggag gaggagcaag acgccggctc ccatgatagc
     3361 ttttccgtgt gtcctcctag cagcgcaaat cataactcct ataatgtaaa ggaaactaaa
     3421 aataggtgga agaacaatcg ccctttttca gcagatggaa attatcgtcc tttagccagg
     3481 acaagacaac agaatatcag catgcagcgt caggaaaacc ttcgctgggt gtcagaactc
     3541 tcttatgtag aagagaaaga acagtggcaa gaacaaatca atcagctaaa gaaacaactt
     3601 gatttcagtg tcagtatttg tcagactttg atgcaagacc agcagactct gtcttgtctg
     3661 ctacaaactc ttctcacggg cccttacagt gttatgccca gcaatgttgc atctcctcaa
     3721 gtacacctta taatgcacca gttgaaccag tgctacaccc agctaacatg gcaacagaat
     3781 aatgtacaaa ggttgaagca aacgctaaat gaacttatgc gccaacaaaa tcatccagaa
     3841 aaacctggaa gcaaggaaag agtcagtagt gcatcacacc ctccttctcc cagtttattt
     3901 tgtcctttca gctttccagc acagcctgta aatctgttca acctaccggg gtttactaat
     3961 ttttcatcat ttgcaccagg tatgaatttc agccctttat ttccttctaa ttttggagat
     4021 ttttctcaaa atatttctac acccactgaa cagcagcaac cattagccca gaatctttca
     4081 gggaaaacag aatacatggc ttttccaaaa ccttttgaaa gtagttcttc tgttggagca
     4141 gaaaaacaaa ggaatcaaaa acagcccgaa gaggaggtgg agaacagtag gacaccatgg
     4201 ttatatgacc aagaaggtga agtagaaaaa ccatttctca agactggatg tgcagtgtct
     4261 gtaaagaaaa caacaaatag taatcgcaaa aatcaattag ataccagtag gagaagacgc
     4321 caatttgatg aagagtcgtt agaaagcttt agcagtatgc ctgacccagt agatccaaca
     4381 acagtaacta aaacattcaa gtcaagaaaa gcatctgcac aggccagcct ggcatctaaa
     4441 gataaaactc ccaaatcaaa gagtaagaag aggcattcta ctcagctgaa aagcagagtt
     4501 aaaaatattg aaaccgggag tgatttttcc atgtttgaag ctttgcggga taccatttat
     4561 tctgaagtag ctacgttgat ttctcaaaat gaatctcgtc cacattttct tattgaactc
     4621 ttccatgaac ttcagctact gaatacagac tatttgagac agagggcttt atatgccttg
     4681 caggacatag tatccagaca tatttctgag aaccatgaaa aagaagggga aaacgtaaag
     4741 tcagtgaatt ctggtacttg gatagcatca aactcagaac ttactcccag tgaaagcctt
     4801 gctactactg atgatgaaac ttttgagaag aactttgaga gagaaacaca taaaataagt
     4861 gagcaaaatg atgctgataa tgctagtgtc acgtctgtat cttcaaattt tgagcctttt
     4921 gcaacagatg atctgggtaa cactgtgatt cacttagatc aagcattagc cagaatgaga
     4981 gaatatgagc gtatgaagac tgagactgaa agtaacacaa atgtcagatg cacctgcagg
     5041 attatagagg atgaggatgg tgctgctgcc ccgactacgg ttgatagttt agaagtggaa
     5101 actcctatta ttgaaaatca tagttcacag caatctgtaa gtgaagtttc taccgtccca
     5161 tgtcctagaa ttgatacaca gcaactggac cggcaaatta aagcaattat gaaagaagtc
     5221 attccctttt tgaaggagca catggatgaa gtatgctctt ctcaacttct aacctcagta
     5281 agacgcatgg ttttgactct tacccagcaa aacgatgaga gcaaagagtt tgtaaagttc
     5341 tttcataaac aacttggaag tatattacag gattcactgg caaaatttgc tggcagaaaa
     5401 ctgaaagatt gtggagaaga tcttcttgta gagatatctg aagtgttatt taatgaattg
     5461 gctttcttta aactcatgca agatttggat aataatagta taactgttaa acagagatgc
     5521 aaaaggaaaa ttgaagcagc tggagtgata cagtcttacg caaaagaggc caaaaggatt
     5581 cttgaaggag atcatggctc acctgctgga gaaattgatg atgaagacaa agataaggat
     5641 gagactgaaa cagttaaaca gagtcaaaca tctgaggttt atgatggtga cggtcccaaa
     5701 aatgtgagct ctgatgtctc tgatcaagag gaagatgaag aaagtgaaga atgtccagtg
     5761 tctattaatt tgtccaaagc tgaaactcag gctttgacta attatggaag tggagaagat
     5821 gagaatgaag atgaagaaat agaagaattt gaagagggac ctgtagatgt ccagacttca
     5881 ctgcaggcta acactgaaac tacagaagaa aatgaacatg acgatcaggt tccacagcat
     5941 gattttgaaa aatcagcgga aagcaaaaat gtcccatcag aacaagaacc cactactagt
     6001 aaagatgacc aagatagcac tcctgtgaag ccctgttacc tcaatatctt ggaaaatgag
     6061 caacctttaa acagcactgt ccaaaaggac gctcttacta ccatcgattc atctaatcag
     6121 cctaacgctt tgcctttacc tttaactgaa attgaaacct tggtgcctag agtcaaagaa
     6181 gttaaatccg cccaggaaac tcctgaaagc tctttggctg gaagtcctga tactgaatct
     6241 ccagtgttag tgaatgacta tgaagcagaa tctggtaaca taagtcaaaa atctgatgaa
     6301 gaagactttg tgaaagttga agatttacca cttaaactga caatatattc agaggcagat
     6361 ctaaggaaga aaatggtaga agaagaacag aaaaaccatt tatctggtga aatattacgt
     6421 gaaatgcaga ctgaagaact agctgggaat tctcagacac taaaagaacc tgaaacagtg
     6481 ggagcccaaa gtacatgaga tgtcttcaga ggctcatcta actctcttta catagtcaat
     6541 gcatatatgg aaatggcact aaataaacat ctgttttgat ctgtaaaaaa tgtaaattag
     6601 tttgacactg catttttggt aggtgtgcta atttctgccc atggcagttt aaaacatcaa
     6661 aaactgaatt ctggacagat tcaagccttg atacactgtg gggttttttt ctttttcttt
     6721 ctgtcatttt ttttggtctt gatttttttt ccccattgtg atgtttggta acgttaaatt
     6781 taaaatgtag ttttaaataa agtttggact taacctgtaa actatctttt ttggaaatta
     6841 tgttgaattc tatacagcaa gtcactgttc tgtataatta ggctattcaa agagcaatgg
     6901 tcaagagtta gagaaatata ctatttattg taaagcccag cctttaggcc aggcttccaa
     6961 ataatgccag tgttgctgct attgggtctc atgttctttt agatacttgc atgtcttatt
     7021 cctgtgcaag aatagggcag gttataaagg tttccaggtt attgtagaat atatattaat
     7081 attctattca aattggatga taagtttaga atacttgtcc ttagtacgta gaacttacat
     7141 aattatctat tagataaata ttttctagaa tttcaattca tatctgtgtt gcctcagtct
     7201 aaaagtaaaa aaaaaaaagt tttctataat tagtatttct gcacagccaa gtaaagtaac
     7261 attgtgatta attttaaaag gaaaaccaag atctttaaag tagagattaa tagaactaaa
     7321 tttatgtacc agcacattaa agttctatat gccttcggac aaccttgcct tttgagatga
     7381 tagtttagcc aaagcatagc agttgcttct gtatgcagtg agagagaagc aggttcgcag
     7441 aggaagtttt gagtaacgaa aatctacatg acctctttgt catgaagtaa atcagcttct
     7501 aaaggtggtg tagctttaga tcccaaactt gccacatacc cagtaaggct tcacatagcc
     7561 agttaacaat taagtcatct ttacagattc cttcttgaat aaaatatgaa gaattgttcc
     7621 aaatagtctt ttaagtttgt caacaattaa ctgaagtatc ccataagaag agaatttggt
     7681 tggtattcct ttgaaattct tgcctgatac ctcagtgtaa aagtccagtc agggagtatt
     7741 aaatgaggat ttccctatga gggcattgac tgtattgctc cataacttaa attatgggag
     7801 acatatatct ccaactttct gaattagtaa aacttattca gaaaactgtc atcccagaaa
     7861 caggaattct tattcaattg gcttgacttc agggaaactg aaacataagt tacattatat
     7921 gtatacttaa gttctgtatt tgttttctag actctgtaca gaaacttcat tttgatactc
     7981 aagccaagcc ttacatatta agactgtctg tctctctctc tgcatgcatt ttaaagatcg
     8041 atacagtgga agcgttgtac ttatacctta gttattactg tagtatctgt gaaccgtatc
     8101 aaacttgctt atttgactta tgttatagct gttgtaatat ggtctgtttt tttctattat
     8161 agtagataat ttagttttaa aatacctagg acttgagagc agataacttg tttaatatgt
     8221 ttttccctgg taactgttgc taaagggtta ggcattgaat attactgttt gtcttcattt
     8281 ttaagttaaa aatttggtta gagataaaag aggaagaaaa ggtcaaaatg agtgagagag
     8341 aaacctcgca ggttgaaata atgcctaaaa gagtgagctc gccagactgt gcagcaggca
     8401 ctctttgtat tttgtaacat tcactttggg taaatgcttt ttcactgtta ataaatgtat
     8461 atcctgcata ca
//
LOCUS       XM_032618267            8348 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X31, mRNA.
ACCESSION   XM_032618267
VERSION     XM_032618267.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8348
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8348
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6374
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X31"
                     /protein_id="XP_032474158.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARDPQQEPMEEIENL
                     KKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSI
                     TSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDE
                     KVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAP
                     SAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNE
                     LRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEV
                     NSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLADCRYNREQEQGIHVAQ
                     GEGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDL
                     VALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKARE
                     KFYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMP
                     AVTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMA
                     EHQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDG
                     YLSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADG
                     NYRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLM
                     QDQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTL
                     NELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPG
                     MNFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRN
                     QKQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFD
                     EESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVK
                     NIETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYA
                     LQDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETH
                     KISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNV
                     RCTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQI
                     KAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQD
                     SLAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGV
                     IQSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVS
                     DQEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANT
                     ETTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPL
                     NSTVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESP
                     VLVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEIL
                     REMQTEELAGNSQTLKEPETVGAQST"
     misc_feature    4392..6290
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgccagaga tcctcagcag gagcctatgg aagagataga aaatttgaag aaacaacacg
     1261 atttattaaa aaggatgtta cagcagcagg agcagctgag agctctgcag ggacgacaag
     1321 ctgctcttct tgctctgcag cataaggcag agcaagctat tgctgtgatg gatgattctg
     1381 ttgtaacaga aactacaggt agcctatctg gagtcagtat cacatctgaa ctaaatgaag
     1441 aattgaatga tttaattcag cgttttcata atcagcttcg tgattctcag cctccacctg
     1501 ttccagacaa tagaagacaa gcagaaagtc tttcattaac tagggaggtt tctcagagca
     1561 gaaatccatc agtttcagag catttacctg atgagaaagt ccagcttttt agcaaaatga
     1621 gagtgttaca agaaaagaaa caaaaaatgg acaagctgct tggagaactt catacacttc
     1681 gagatgagca tttgaacaat tcatcctttg tgccttcttc agcctcccca caaaggagtg
     1741 tggatcagag aagtacaacc gcagctccct ctgctcctgt aggcttaaca ccagttgtca
     1801 atggagaatc caatagcctc acatcatctg ttccttatcc tgctgcttct ctagtttctc
     1861 agaatcagag tgaaaatgaa ggccacctaa atccaactga aaaactccag aagttaaatg
     1921 aagttcgaaa gaggttgaat gagctaagag agttagttca ttattacgag caaacatcag
     1981 atatgatgac agatgctgta aatgaaaaca caaaagaaga agaaactgaa gagtcagaat
     2041 atgattccga gcatgaaaat tctgaacctg ttactaacat tcgaaatcca caagtagctg
     2101 ccacctggaa tgaagtaaat agtaattcta aggcacagtg tgtttctaat aatagagatg
     2161 ggagatcagt taattctaat tgtgaaatta acaacagatc tgctgccaac ataagggctc
     2221 taaacatgcc tccttcttta gcagattgtc gatacaatag agaacaagaa caggggattc
     2281 acgttgcaca aggtgaaggt gaggaggagg aagaggaaga agcagaagat gaggcagtca
     2341 gtggagcgtc attatctagt catcggagca gtctggttga tgagacgcct gaagatgctg
     2401 aatttgaaca gaagatcagc agacttatgg ctgcaaaaca gaaacttaga cagttacaag
     2461 atcttgttgc attggtgcag gatgatgata cagcagatca aggagttatc tctgccaata
     2521 cctcaaattt ggatgatttc tacccagcag aagaagacac caaacaaaat gcaaataaca
     2581 ctagaggaaa taccaataaa acacagaaag atgctggagt aaatgaaaag gcaagagaga
     2641 aattttatga ggctaaacta cagcagcaac agagagagct caaacaattg caggaagaaa
     2701 gaaagaaact gattgagatt caagagaaaa ttcaagcatt gcaaaaggca tgtcctgacc
     2761 tacagctgtc agccactagt gcaggtaatt gtcccacaaa aaaatatatg ccagctgtta
     2821 cttcaacccc aactgttaat gaaaatgaag ccagtacaag cagatctgct tttgaacctg
     2881 atgatccttc agtggtagat aatgagttgt ggtcagaaat gcgaagacac gaaatgttaa
     2941 gggaagagct gcgacagaga agaaagcagc ttgaagcttt gatggctgaa catcagagga
     3001 ggcaaggtct ggctgaaact acatctccag tggctgtttc actgagaagt gatgggtctg
     3061 agaacctgtg tacgcctcaa cagagtagaa cagaaaaaac aatggcaact tggggaggtt
     3121 ctatccagtg tgcactagat ggagaaggag atgaagatgg ttacctttct gaagcagttg
     3181 ttcggacaga tgaagacgag gaggaggagg agcaagacgc cggctcccat gatagctttt
     3241 ccgtgtgtcc tcctagcagc gcaaatcata actcctataa tgtaaaggaa actaaaaata
     3301 ggtggaagaa caatcgccct ttttcagcag atggaaatta tcgtccttta gccaggacaa
     3361 gacaacagaa tatcagcatg cagcgtcagg aaaaccttcg ctgggtgtca gaactctctt
     3421 atgtagaaga gaaagaacag tggcaagaac aaatcaatca gctaaagaaa caacttgatt
     3481 tcagtgtcag tatttgtcag actttgatgc aagaccagca gactctgtct tgtctgctac
     3541 aaactcttct cacgggccct tacagtgtta tgcccagcaa tgttgcatct cctcaagtac
     3601 accttataat gcaccagttg aaccagtgct acacccagct aacatggcaa cagaataatg
     3661 tacaaaggtt gaagcaaacg ctaaatgaac ttatgcgcca acaaaatcat ccagaaaaac
     3721 ctggaagcaa ggaaagagtc agtagtgcat cacaccctcc ttctcccagt ttattttgtc
     3781 ctttcagctt tccagcacag cctgtaaatc tgttcaacct accggggttt actaattttt
     3841 catcatttgc accaggtatg aatttcagcc ctttatttcc ttctaatttt ggagattttt
     3901 ctcaaaatat ttctacaccc actgaacagc agcaaccatt agcccagaat ctttcaggga
     3961 aaacagaata catggctttt ccaaaacctt ttgaaagtag ttcttctgtt ggagcagaaa
     4021 aacaaaggaa tcaaaaacag cccgaagagg aggtggagaa cagtaggaca ccatggttat
     4081 atgaccaaga aggtgaagta gaaaaaccat ttctcaagac tggatgtgca gtgtctgtaa
     4141 agaaaacaac aaatagtaat cgcaaaaatc aattagatac cagtaggaga agacgccaat
     4201 ttgatgaaga gtcgttagaa agctttagca gtatgcctga cccagtagat ccaacaacag
     4261 taactaaaac attcaagtca agaaaagcat ctgcacaggc cagcctggca tctaaagata
     4321 aaactcccaa atcaaagagt aagaagaggc attctactca gctgaaaagc agagttaaaa
     4381 atattgaaac cgggagtgat ttttccatgt ttgaagcttt gcgggatacc atttattctg
     4441 aagtagctac gttgatttct caaaatgaat ctcgtccaca ttttcttatt gaactcttcc
     4501 atgaacttca gctactgaat acagactatt tgagacagag ggctttatat gccttgcagg
     4561 acatagtatc cagacatatt tctgagaacc atgaaaaaga aggggaaaac gtaaagtcag
     4621 tgaattctgg tacttggata gcatcaaact cagaacttac tcccagtgaa agccttgcta
     4681 ctactgatga tgaaactttt gagaagaact ttgagagaga aacacataaa ataagtgagc
     4741 aaaatgatgc tgataatgct agtgtcacgt ctgtatcttc aaattttgag ccttttgcaa
     4801 cagatgatct gggtaacact gtgattcact tagatcaagc attagccaga atgagagaat
     4861 atgagcgtat gaagactgag actgaaagta acacaaatgt cagatgcacc tgcaggatta
     4921 tagaggatga ggatggtgct gctgccccga ctacggttga tagtttagaa gtggaaactc
     4981 ctattattga aaatcatagt tcacagcaat ctgtaagtga agtttctacc gtcccatgtc
     5041 ctagaattga tacacagcaa ctggaccggc aaattaaagc aattatgaaa gaagtcattc
     5101 cctttttgaa ggagcacatg gatgaagtat gctcttctca acttctaacc tcagtaagac
     5161 gcatggtttt gactcttacc cagcaaaacg atgagagcaa agagtttgta aagttctttc
     5221 ataaacaact tggaagtata ttacaggatt cactggcaaa atttgctggc agaaaactga
     5281 aagattgtgg agaagatctt cttgtagaga tatctgaagt gttatttaat gaattggctt
     5341 tctttaaact catgcaagat ttggataata atagtataac tgttaaacag agatgcaaaa
     5401 ggaaaattga agcagctgga gtgatacagt cttacgcaaa agaggccaaa aggattcttg
     5461 aaggagatca tggctcacct gctggagaaa ttgatgatga agacaaagat aaggatgaga
     5521 ctgaaacagt taaacagagt caaacatctg aggtttatga tggtgacggt cccaaaaatg
     5581 tgagctctga tgtctctgat caagaggaag atgaagaaag tgaagaatgt ccagtgtcta
     5641 ttaatttgtc caaagctgaa actcaggctt tgactaatta tggaagtgga gaagatgaga
     5701 atgaagatga agaaatagaa gaatttgaag agggacctgt agatgtccag acttcactgc
     5761 aggctaacac tgaaactaca gaagaaaatg aacatgacga tcaggttcca cagcatgatt
     5821 ttgaaaaatc agcggaaagc aaaaatgtcc catcagaaca agaacccact actagtaaag
     5881 atgaccaaga tagcactcct gtgaagccct gttacctcaa tatcttggaa aatgagcaac
     5941 ctttaaacag cactgtccaa aaggacgctc ttactaccat cgattcatct aatcagccta
     6001 acgctttgcc tttaccttta actgaaattg aaaccttggt gcctagagtc aaagaagtta
     6061 aatccgccca ggaaactcct gaaagctctt tggctggaag tcctgatact gaatctccag
     6121 tgttagtgaa tgactatgaa gcagaatctg gtaacataag tcaaaaatct gatgaagaag
     6181 actttgtgaa agttgaagat ttaccactta aactgacaat atattcagag gcagatctaa
     6241 ggaagaaaat ggtagaagaa gaacagaaaa accatttatc tggtgaaata ttacgtgaaa
     6301 tgcagactga agaactagct gggaattctc agacactaaa agaacctgaa acagtgggag
     6361 cccaaagtac atgagatgtc ttcagaggct catctaactc tctttacata gtcaatgcat
     6421 atatggaaat ggcactaaat aaacatctgt tttgatctgt aaaaaatgta aattagtttg
     6481 acactgcatt tttggtaggt gtgctaattt ctgcccatgg cagtttaaaa catcaaaaac
     6541 tgaattctgg acagattcaa gccttgatac actgtggggt ttttttcttt ttctttctgt
     6601 catttttttt ggtcttgatt ttttttcccc attgtgatgt ttggtaacgt taaatttaaa
     6661 atgtagtttt aaataaagtt tggacttaac ctgtaaacta tcttttttgg aaattatgtt
     6721 gaattctata cagcaagtca ctgttctgta taattaggct attcaaagag caatggtcaa
     6781 gagttagaga aatatactat ttattgtaaa gcccagcctt taggccaggc ttccaaataa
     6841 tgccagtgtt gctgctattg ggtctcatgt tcttttagat acttgcatgt cttattcctg
     6901 tgcaagaata gggcaggtta taaaggtttc caggttattg tagaatatat attaatattc
     6961 tattcaaatt ggatgataag tttagaatac ttgtccttag tacgtagaac ttacataatt
     7021 atctattaga taaatatttt ctagaatttc aattcatatc tgtgttgcct cagtctaaaa
     7081 gtaaaaaaaa aaaagttttc tataattagt atttctgcac agccaagtaa agtaacattg
     7141 tgattaattt taaaaggaaa accaagatct ttaaagtaga gattaataga actaaattta
     7201 tgtaccagca cattaaagtt ctatatgcct tcggacaacc ttgccttttg agatgatagt
     7261 ttagccaaag catagcagtt gcttctgtat gcagtgagag agaagcaggt tcgcagagga
     7321 agttttgagt aacgaaaatc tacatgacct ctttgtcatg aagtaaatca gcttctaaag
     7381 gtggtgtagc tttagatccc aaacttgcca catacccagt aaggcttcac atagccagtt
     7441 aacaattaag tcatctttac agattccttc ttgaataaaa tatgaagaat tgttccaaat
     7501 agtcttttaa gtttgtcaac aattaactga agtatcccat aagaagagaa tttggttggt
     7561 attcctttga aattcttgcc tgatacctca gtgtaaaagt ccagtcaggg agtattaaat
     7621 gaggatttcc ctatgagggc attgactgta ttgctccata acttaaatta tgggagacat
     7681 atatctccaa ctttctgaat tagtaaaact tattcagaaa actgtcatcc cagaaacagg
     7741 aattcttatt caattggctt gacttcaggg aaactgaaac ataagttaca ttatatgtat
     7801 acttaagttc tgtatttgtt ttctagactc tgtacagaaa cttcattttg atactcaagc
     7861 caagccttac atattaagac tgtctgtctc tctctctgca tgcattttaa agatcgatac
     7921 agtggaagcg ttgtacttat accttagtta ttactgtagt atctgtgaac cgtatcaaac
     7981 ttgcttattt gacttatgtt atagctgttg taatatggtc tgtttttttc tattatagta
     8041 gataatttag ttttaaaata cctaggactt gagagcagat aacttgttta atatgttttt
     8101 ccctggtaac tgttgctaaa gggttaggca ttgaatatta ctgtttgtct tcatttttaa
     8161 gttaaaaatt tggttagaga taaaagagga agaaaaggtc aaaatgagtg agagagaaac
     8221 ctcgcaggtt gaaataatgc ctaaaagagt gagctcgcca gactgtgcag caggcactct
     8281 ttgtattttg taacattcac tttgggtaaa tgctttttca ctgttaataa atgtatatcc
     8341 tgcataca
//
LOCUS       XM_032618268            8345 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pericentriolar material 1 (PCM1),
            transcript variant X32, mRNA.
ACCESSION   XM_032618268
VERSION     XM_032618268.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8345
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8345
                     /gene="PCM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 25 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746680"
     CDS             420..6371
                     /gene="PCM1"
                     /codon_start=1
                     /product="pericentriolar material 1 protein isoform X32"
                     /protein_id="XP_032474159.1"
                     /db_xref="GeneID:116746680"
                     /translation="MATGGGPFEEGMNDQDLPNWSNEGVDDRLNNMDWGGQQKKANRS
                     SEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTFPHSRYMTQMSVPEQAELEK
                     LKQRINFSDLDQRSIGSDSQGRATAANNKRQLSENRKPFNFLPMQINTNKSKDAAVNP
                     QKREMIGSAQCKELFASALSNDLLQNCQVSEEDGRGEPAMESSQIVSRLVQIRDYITK
                     ASSMREDLVEKNERSANVERLTHLIDHLKEQEKSYMKFLQKILARDPQQEPMEEIENL
                     KKQHDLLKRMLQQQEQLRALQGRQAALLALQHKAEQAIAVMDDSVVTETTGSLSGVSI
                     TSELNEELNDLIQRFHNQLRDSQPPPVPDNRRQAESLSLTREVSQSRNPSVSEHLPDE
                     KVQLFSKMRVLQEKKQKMDKLLGELHTLRDEHLNNSSFVPSSASPQRSVDQRSTTAAP
                     SAPVGLTPVVNGESNSLTSSVPYPAASLVSQNQSENEGHLNPTEKLQKLNEVRKRLNE
                     LRELVHYYEQTSDMMTDAVNENTKEEETEESEYDSEHENSEPVTNIRNPQVAATWNEV
                     NSNSKAQCVSNNRDGRSVNSNCEINNRSAANIRALNMPPSLDCRYNREQEQGIHVAQG
                     EGEEEEEEEAEDEAVSGASLSSHRSSLVDETPEDAEFEQKISRLMAAKQKLRQLQDLV
                     ALVQDDDTADQGVISANTSNLDDFYPAEEDTKQNANNTRGNTNKTQKDAGVNEKAREK
                     FYEAKLQQQQRELKQLQEERKKLIEIQEKIQALQKACPDLQLSATSAGNCPTKKYMPA
                     VTSTPTVNENEASTSRSAFEPDDPSVVDNELWSEMRRHEMLREELRQRRKQLEALMAE
                     HQRRQGLAETTSPVAVSLRSDGSENLCTPQQSRTEKTMATWGGSIQCALDGEGDEDGY
                     LSEAVVRTDEDEEEEEQDAGSHDSFSVCPPSSANHNSYNVKETKNRWKNNRPFSADGN
                     YRPLARTRQQNISMQRQENLRWVSELSYVEEKEQWQEQINQLKKQLDFSVSICQTLMQ
                     DQQTLSCLLQTLLTGPYSVMPSNVASPQVHLIMHQLNQCYTQLTWQQNNVQRLKQTLN
                     ELMRQQNHPEKPGSKERVSSASHPPSPSLFCPFSFPAQPVNLFNLPGFTNFSSFAPGM
                     NFSPLFPSNFGDFSQNISTPTEQQQPLAQNLSGKTEYMAFPKPFESSSSVGAEKQRNQ
                     KQPEEEVENSRTPWLYDQEGEVEKPFLKTGCAVSVKKTTNSNRKNQLDTSRRRRQFDE
                     ESLESFSSMPDPVDPTTVTKTFKSRKASAQASLASKDKTPKSKSKKRHSTQLKSRVKN
                     IETGSDFSMFEALRDTIYSEVATLISQNESRPHFLIELFHELQLLNTDYLRQRALYAL
                     QDIVSRHISENHEKEGENVKSVNSGTWIASNSELTPSESLATTDDETFEKNFERETHK
                     ISEQNDADNASVTSVSSNFEPFATDDLGNTVIHLDQALARMREYERMKTETESNTNVR
                     CTCRIIEDEDGAAAPTTVDSLEVETPIIENHSSQQSVSEVSTVPCPRIDTQQLDRQIK
                     AIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDS
                     LAKFAGRKLKDCGEDLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEAAGVI
                     QSYAKEAKRILEGDHGSPAGEIDDEDKDKDETETVKQSQTSEVYDGDGPKNVSSDVSD
                     QEEDEESEECPVSINLSKAETQALTNYGSGEDENEDEEIEEFEEGPVDVQTSLQANTE
                     TTEENEHDDQVPQHDFEKSAESKNVPSEQEPTTSKDDQDSTPVKPCYLNILENEQPLN
                     STVQKDALTTIDSSNQPNALPLPLTEIETLVPRVKEVKSAQETPESSLAGSPDTESPV
                     LVNDYEAESGNISQKSDEEDFVKVEDLPLKLTIYSEADLRKKMVEEEQKNHLSGEILR
                     EMQTEELAGNSQTLKEPETVGAQST"
     misc_feature    4389..6287
                     /gene="PCM1"
                     /note="Pericentriolar material 1 C terminus; Region:
                     PCM1_C; pfam15717"
                     /db_xref="CDD:464821"
ORIGIN      
        1 gagcgctgat cgcactgcgg ctcccgccca ggcgaatttc gcccccgcgc ggccgttgcc
       61 gaggagacgg cgcatgtctc ccggcgcgtt gccccctctg cagtcccccc gcccctcttc
      121 tcccaccaca atgagagcct aagatggcgg tggctgcgac ggttggagcc gagtaggtga
      181 tgtagaaaag gcggccattg ggccctaagc agccaggaaa cttggggact ctccctgctg
      241 tggtctctaa gggaggcccg ccgccggtgg cggttcgtgg gggctggccg ctactccgcc
      301 cttggcggga gcggctgctt cgtttacaga caacagtttt gaagtgtgaa acaggaaagg
      361 agccgtttct gagctgcaaa aactagtttc taaacagaac attaattata aaagccagta
      421 tggccacagg aggaggtcct tttgaagaag gcatgaatga tcaggattta ccaaactgga
      481 gcaatgaggg tgttgatgac cgactcaaca acatggattg gggtggccaa cagaagaagg
      541 caaatagatc atcagaaaag aataagaaaa agtttggtgt agaaagtgat aaaagggtaa
      601 ctaatgatat ttctccggag tcatcgccag gagttggaag gcgaagaacg aagactccac
      661 atacatttcc gcatagtaga tacatgacgc agatgtctgt tcccgagcag gcagaattag
      721 agaaacttaa acagcggata aacttcagtg atttagatca gagaagcatt ggaagtgatt
      781 ctcaaggtag agcaacagct gctaacaaca aacgtcagct tagtgaaaac cgaaagccct
      841 tcaacttttt gcctatgcag attaatacta acaagagcaa agatgctgct gtaaatcctc
      901 aaaagagaga aatgattgga tcagcacaat gtaaagagtt gtttgcttct gctttaagta
      961 atgacctttt gcaaaactgt caagtctctg aagaagatgg gagaggagag cctgcaatgg
     1021 agagcagcca gattgtaagc aggcttgttc agattcgtga ctatattact aaagctagtt
     1081 ccatgcggga agatcttgta gagaaaaatg aaagatctgc taatgttgag cgccttactc
     1141 atctaataga tcaccttaaa gaacaagaaa agtcatatat gaaatttctc caaaaaattc
     1201 ttgccagaga tcctcagcag gagcctatgg aagagataga aaatttgaag aaacaacacg
     1261 atttattaaa aaggatgtta cagcagcagg agcagctgag agctctgcag ggacgacaag
     1321 ctgctcttct tgctctgcag cataaggcag agcaagctat tgctgtgatg gatgattctg
     1381 ttgtaacaga aactacaggt agcctatctg gagtcagtat cacatctgaa ctaaatgaag
     1441 aattgaatga tttaattcag cgttttcata atcagcttcg tgattctcag cctccacctg
     1501 ttccagacaa tagaagacaa gcagaaagtc tttcattaac tagggaggtt tctcagagca
     1561 gaaatccatc agtttcagag catttacctg atgagaaagt ccagcttttt agcaaaatga
     1621 gagtgttaca agaaaagaaa caaaaaatgg acaagctgct tggagaactt catacacttc
     1681 gagatgagca tttgaacaat tcatcctttg tgccttcttc agcctcccca caaaggagtg
     1741 tggatcagag aagtacaacc gcagctccct ctgctcctgt aggcttaaca ccagttgtca
     1801 atggagaatc caatagcctc acatcatctg ttccttatcc tgctgcttct ctagtttctc
     1861 agaatcagag tgaaaatgaa ggccacctaa atccaactga aaaactccag aagttaaatg
     1921 aagttcgaaa gaggttgaat gagctaagag agttagttca ttattacgag caaacatcag
     1981 atatgatgac agatgctgta aatgaaaaca caaaagaaga agaaactgaa gagtcagaat
     2041 atgattccga gcatgaaaat tctgaacctg ttactaacat tcgaaatcca caagtagctg
     2101 ccacctggaa tgaagtaaat agtaattcta aggcacagtg tgtttctaat aatagagatg
     2161 ggagatcagt taattctaat tgtgaaatta acaacagatc tgctgccaac ataagggctc
     2221 taaacatgcc tccttcttta gattgtcgat acaatagaga acaagaacag gggattcacg
     2281 ttgcacaagg tgaaggtgag gaggaggaag aggaagaagc agaagatgag gcagtcagtg
     2341 gagcgtcatt atctagtcat cggagcagtc tggttgatga gacgcctgaa gatgctgaat
     2401 ttgaacagaa gatcagcaga cttatggctg caaaacagaa acttagacag ttacaagatc
     2461 ttgttgcatt ggtgcaggat gatgatacag cagatcaagg agttatctct gccaatacct
     2521 caaatttgga tgatttctac ccagcagaag aagacaccaa acaaaatgca aataacacta
     2581 gaggaaatac caataaaaca cagaaagatg ctggagtaaa tgaaaaggca agagagaaat
     2641 tttatgaggc taaactacag cagcaacaga gagagctcaa acaattgcag gaagaaagaa
     2701 agaaactgat tgagattcaa gagaaaattc aagcattgca aaaggcatgt cctgacctac
     2761 agctgtcagc cactagtgca ggtaattgtc ccacaaaaaa atatatgcca gctgttactt
     2821 caaccccaac tgttaatgaa aatgaagcca gtacaagcag atctgctttt gaacctgatg
     2881 atccttcagt ggtagataat gagttgtggt cagaaatgcg aagacacgaa atgttaaggg
     2941 aagagctgcg acagagaaga aagcagcttg aagctttgat ggctgaacat cagaggaggc
     3001 aaggtctggc tgaaactaca tctccagtgg ctgtttcact gagaagtgat gggtctgaga
     3061 acctgtgtac gcctcaacag agtagaacag aaaaaacaat ggcaacttgg ggaggttcta
     3121 tccagtgtgc actagatgga gaaggagatg aagatggtta cctttctgaa gcagttgttc
     3181 ggacagatga agacgaggag gaggaggagc aagacgccgg ctcccatgat agcttttccg
     3241 tgtgtcctcc tagcagcgca aatcataact cctataatgt aaaggaaact aaaaataggt
     3301 ggaagaacaa tcgccctttt tcagcagatg gaaattatcg tcctttagcc aggacaagac
     3361 aacagaatat cagcatgcag cgtcaggaaa accttcgctg ggtgtcagaa ctctcttatg
     3421 tagaagagaa agaacagtgg caagaacaaa tcaatcagct aaagaaacaa cttgatttca
     3481 gtgtcagtat ttgtcagact ttgatgcaag accagcagac tctgtcttgt ctgctacaaa
     3541 ctcttctcac gggcccttac agtgttatgc ccagcaatgt tgcatctcct caagtacacc
     3601 ttataatgca ccagttgaac cagtgctaca cccagctaac atggcaacag aataatgtac
     3661 aaaggttgaa gcaaacgcta aatgaactta tgcgccaaca aaatcatcca gaaaaacctg
     3721 gaagcaagga aagagtcagt agtgcatcac accctccttc tcccagttta ttttgtcctt
     3781 tcagctttcc agcacagcct gtaaatctgt tcaacctacc ggggtttact aatttttcat
     3841 catttgcacc aggtatgaat ttcagccctt tatttccttc taattttgga gatttttctc
     3901 aaaatatttc tacacccact gaacagcagc aaccattagc ccagaatctt tcagggaaaa
     3961 cagaatacat ggcttttcca aaaccttttg aaagtagttc ttctgttgga gcagaaaaac
     4021 aaaggaatca aaaacagccc gaagaggagg tggagaacag taggacacca tggttatatg
     4081 accaagaagg tgaagtagaa aaaccatttc tcaagactgg atgtgcagtg tctgtaaaga
     4141 aaacaacaaa tagtaatcgc aaaaatcaat tagataccag taggagaaga cgccaatttg
     4201 atgaagagtc gttagaaagc tttagcagta tgcctgaccc agtagatcca acaacagtaa
     4261 ctaaaacatt caagtcaaga aaagcatctg cacaggccag cctggcatct aaagataaaa
     4321 ctcccaaatc aaagagtaag aagaggcatt ctactcagct gaaaagcaga gttaaaaata
     4381 ttgaaaccgg gagtgatttt tccatgtttg aagctttgcg ggataccatt tattctgaag
     4441 tagctacgtt gatttctcaa aatgaatctc gtccacattt tcttattgaa ctcttccatg
     4501 aacttcagct actgaataca gactatttga gacagagggc tttatatgcc ttgcaggaca
     4561 tagtatccag acatatttct gagaaccatg aaaaagaagg ggaaaacgta aagtcagtga
     4621 attctggtac ttggatagca tcaaactcag aacttactcc cagtgaaagc cttgctacta
     4681 ctgatgatga aacttttgag aagaactttg agagagaaac acataaaata agtgagcaaa
     4741 atgatgctga taatgctagt gtcacgtctg tatcttcaaa ttttgagcct tttgcaacag
     4801 atgatctggg taacactgtg attcacttag atcaagcatt agccagaatg agagaatatg
     4861 agcgtatgaa gactgagact gaaagtaaca caaatgtcag atgcacctgc aggattatag
     4921 aggatgagga tggtgctgct gccccgacta cggttgatag tttagaagtg gaaactccta
     4981 ttattgaaaa tcatagttca cagcaatctg taagtgaagt ttctaccgtc ccatgtccta
     5041 gaattgatac acagcaactg gaccggcaaa ttaaagcaat tatgaaagaa gtcattccct
     5101 ttttgaagga gcacatggat gaagtatgct cttctcaact tctaacctca gtaagacgca
     5161 tggttttgac tcttacccag caaaacgatg agagcaaaga gtttgtaaag ttctttcata
     5221 aacaacttgg aagtatatta caggattcac tggcaaaatt tgctggcaga aaactgaaag
     5281 attgtggaga agatcttctt gtagagatat ctgaagtgtt atttaatgaa ttggctttct
     5341 ttaaactcat gcaagatttg gataataata gtataactgt taaacagaga tgcaaaagga
     5401 aaattgaagc agctggagtg atacagtctt acgcaaaaga ggccaaaagg attcttgaag
     5461 gagatcatgg ctcacctgct ggagaaattg atgatgaaga caaagataag gatgagactg
     5521 aaacagttaa acagagtcaa acatctgagg tttatgatgg tgacggtccc aaaaatgtga
     5581 gctctgatgt ctctgatcaa gaggaagatg aagaaagtga agaatgtcca gtgtctatta
     5641 atttgtccaa agctgaaact caggctttga ctaattatgg aagtggagaa gatgagaatg
     5701 aagatgaaga aatagaagaa tttgaagagg gacctgtaga tgtccagact tcactgcagg
     5761 ctaacactga aactacagaa gaaaatgaac atgacgatca ggttccacag catgattttg
     5821 aaaaatcagc ggaaagcaaa aatgtcccat cagaacaaga acccactact agtaaagatg
     5881 accaagatag cactcctgtg aagccctgtt acctcaatat cttggaaaat gagcaacctt
     5941 taaacagcac tgtccaaaag gacgctctta ctaccatcga ttcatctaat cagcctaacg
     6001 ctttgccttt acctttaact gaaattgaaa ccttggtgcc tagagtcaaa gaagttaaat
     6061 ccgcccagga aactcctgaa agctctttgg ctggaagtcc tgatactgaa tctccagtgt
     6121 tagtgaatga ctatgaagca gaatctggta acataagtca aaaatctgat gaagaagact
     6181 ttgtgaaagt tgaagattta ccacttaaac tgacaatata ttcagaggca gatctaagga
     6241 agaaaatggt agaagaagaa cagaaaaacc atttatctgg tgaaatatta cgtgaaatgc
     6301 agactgaaga actagctggg aattctcaga cactaaaaga acctgaaaca gtgggagccc
     6361 aaagtacatg agatgtcttc agaggctcat ctaactctct ttacatagtc aatgcatata
     6421 tggaaatggc actaaataaa catctgtttt gatctgtaaa aaatgtaaat tagtttgaca
     6481 ctgcattttt ggtaggtgtg ctaatttctg cccatggcag tttaaaacat caaaaactga
     6541 attctggaca gattcaagcc ttgatacact gtggggtttt tttctttttc tttctgtcat
     6601 tttttttggt cttgattttt tttccccatt gtgatgtttg gtaacgttaa atttaaaatg
     6661 tagttttaaa taaagtttgg acttaacctg taaactatct tttttggaaa ttatgttgaa
     6721 ttctatacag caagtcactg ttctgtataa ttaggctatt caaagagcaa tggtcaagag
     6781 ttagagaaat atactattta ttgtaaagcc cagcctttag gccaggcttc caaataatgc
     6841 cagtgttgct gctattgggt ctcatgttct tttagatact tgcatgtctt attcctgtgc
     6901 aagaataggg caggttataa aggtttccag gttattgtag aatatatatt aatattctat
     6961 tcaaattgga tgataagttt agaatacttg tccttagtac gtagaactta cataattatc
     7021 tattagataa atattttcta gaatttcaat tcatatctgt gttgcctcag tctaaaagta
     7081 aaaaaaaaaa agttttctat aattagtatt tctgcacagc caagtaaagt aacattgtga
     7141 ttaattttaa aaggaaaacc aagatcttta aagtagagat taatagaact aaatttatgt
     7201 accagcacat taaagttcta tatgccttcg gacaaccttg ccttttgaga tgatagttta
     7261 gccaaagcat agcagttgct tctgtatgca gtgagagaga agcaggttcg cagaggaagt
     7321 tttgagtaac gaaaatctac atgacctctt tgtcatgaag taaatcagct tctaaaggtg
     7381 gtgtagcttt agatcccaaa cttgccacat acccagtaag gcttcacata gccagttaac
     7441 aattaagtca tctttacaga ttccttcttg aataaaatat gaagaattgt tccaaatagt
     7501 cttttaagtt tgtcaacaat taactgaagt atcccataag aagagaattt ggttggtatt
     7561 cctttgaaat tcttgcctga tacctcagtg taaaagtcca gtcagggagt attaaatgag
     7621 gatttcccta tgagggcatt gactgtattg ctccataact taaattatgg gagacatata
     7681 tctccaactt tctgaattag taaaacttat tcagaaaact gtcatcccag aaacaggaat
     7741 tcttattcaa ttggcttgac ttcagggaaa ctgaaacata agttacatta tatgtatact
     7801 taagttctgt atttgttttc tagactctgt acagaaactt cattttgata ctcaagccaa
     7861 gccttacata ttaagactgt ctgtctctct ctctgcatgc attttaaaga tcgatacagt
     7921 ggaagcgttg tacttatacc ttagttatta ctgtagtatc tgtgaaccgt atcaaacttg
     7981 cttatttgac ttatgttata gctgttgtaa tatggtctgt ttttttctat tatagtagat
     8041 aatttagttt taaaatacct aggacttgag agcagataac ttgtttaata tgtttttccc
     8101 tggtaactgt tgctaaaggg ttaggcattg aatattactg tttgtcttca tttttaagtt
     8161 aaaaatttgg ttagagataa aagaggaaga aaaggtcaaa atgagtgaga gagaaacctc
     8221 gcaggttgaa ataatgccta aaagagtgag ctcgccagac tgtgcagcag gcactctttg
     8281 tattttgtaa cattcacttt gggtaaatgc tttttcactg ttaataaatg tatatcctgc
     8341 ataca
//
LOCUS       XM_032618269           10104 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X1, mRNA.
ACCESSION   XM_032618269
VERSION     XM_032618269.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10104
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10104
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 16 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746681"
     CDS             153..4469
                     /gene="NSD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD3 isoform
                     X1"
                     /protein_id="XP_032474160.1"
                     /db_xref="GeneID:116746681"
                     /translation="MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNNSDIVEDG
                     GQTPYEATLQQGFQYPPTTEDLPPLTNGYPSSISMYETQTKYQSYNQYPNGSANGFGA
                     VRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPPPSVPQTVIPKKTGSPEIKLKITKT
                     IQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPR
                     LEPEEQNRPNERVDTVSEKPREDPVLKEELPVQPMLPSVPTTEVSAGVKFQVGDLVWS
                     KVGTYPWWPCMVSSDPQLEVHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHK
                     QYEELLAEATRQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF
                     IYIDKQPEEALSQAKKNVASKAEVKKTRRPRSVLNTQPEQTSAGEAASSLSGTEIRRH
                     SQRRHTSVEEDEPPPVKVAWKTAAARKSLPASITMHKGSLDLQKCNMSPVVKIEQVFA
                     LQNATGDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISTPNQRNEKATQNMSSPETAS
                     GPAGSVEKKQQRRSIRTRSESEKSTEVVPKKKIKKEQVETVPQATVKTGLQKGASEIS
                     DSCKPLKKRSRASTDVEMASSTYRDTSDSDSRGLSDLQVGFGKQVDSPSATADADASD
                     VQSVDSSLSRRGTGMSRKDTVCQICESSGDSLIPCEGECCKHFHLECLGLTSFPDGKF
                     ICVECKTGEHPCFSCKVSGTDVKRCSVGACGKFYHEACVRKFPTAIFESKGFRCPQHC
                     CSACCMEKDIHKASKGRMMRCLRCPVAYHSGDACIAAGSIFLSSYVLICSNHSKRSSN
                     SSSAVNVGFCFVCARGLIVQDHSDPMFSSYAYKSHYLLNESNRAELMKLPMIPSSSAS
                     KKKCEKGGRLLCCESCPASFHPECLSIEMPEGCWNCNDCKAGKKLHYKQIVWVKLGNY
                     RWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEG
                     QTSINKTFKKALEEAAKRFQELKAQRESKEALEIEKNSRKPPPYKHIKANKVIGKVQI
                     QVADLSEIPRCNCKPADENPCGLESECLNRMLQYECHPQVCPAGERCQNQCFTKRLYP
                     DAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENSVTNFYMLT
                     VTKDRIIDAGPKGNYSRFMNHSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNY
                     NLDCLGNGRTECHCGAENCSGFLGVRPKSACASTTEEKAKNAKLKQKRRKIKTEPKQL
                     HEDHCFQCGDSGELVMCDRKDCPKAYHLLCLNLPQPPYGKWECPWHQCDECSGAAVSF
                     CEFCPRSFCKDHEKGALVPSALEGRLCCSEHDPVSPVSPEYWSKIKCKLESQDHGEEV
                     KE"
     misc_feature    954..1343
                     /gene="NSD3"
                     /note="first PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt1; cd20163"
                     /db_xref="CDD:438991"
     misc_feature    order(993..995,1002..1004,1086..1088)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438991"
     misc_feature    996..1007
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438991"
     misc_feature    order(1197..1205,1212..1217)
                     /gene="NSD3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438991"
     misc_feature    <1956..2390
                     /gene="NSD3"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; Region: TNG2;
                     COG5034"
                     /db_xref="CDD:227367"
     misc_feature    2259..2390
                     /gene="NSD3"
                     /note="PHD finger 1 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD1_NSD3; cd15649"
                     /db_xref="CDD:277119"
     misc_feature    order(2259..2261,2289..2303,2316..2318,2370..2372)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277119"
     misc_feature    2403..2543
                     /gene="NSD3"
                     /note="PHD finger 2 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD2_NSD3; cd15652"
                     /db_xref="CDD:277122"
     misc_feature    order(2403..2405,2433..2447,2463..2465,2526..2528)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277122"
     misc_feature    2544..2693
                     /gene="NSD3"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    order(2544..2546,2598..2609,2619..2621,2685..2687)
                     /gene="NSD3"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276966"
     misc_feature    2904..3011
                     /gene="NSD3"
                     /note="PHD finger 4 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD4_NSD3; cd15658"
                     /db_xref="CDD:277128"
     misc_feature    order(2919..2933,2943..2945,2994..2996)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277128"
     misc_feature    3030..3314
                     /gene="NSD3"
                     /note="second PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt2; cd20166"
                     /db_xref="CDD:438994"
     misc_feature    order(3066..3068,3075..3077,3159..3161)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438994"
     misc_feature    3069..3080
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438994"
     misc_feature    3465..3581
                     /gene="NSD3"
                     /note="AWS domain; Region: AWS; pfam17907"
                     /db_xref="CDD:465559"
     misc_feature    3585..4010
                     /gene="NSD3"
                     /note="SET domain (including post-SET domain) found in
                     nuclear receptor-binding SET domain-containing protein 3
                     (NSD3) and similar proteins; Region: SET_NSD3; cd19212"
                     /db_xref="CDD:380989"
     misc_feature    order(3618..3626,3675..3677,3705..3707,3717..3719,
                     3744..3764,3813..3827,3846..3854,3897..3899,3930..3962,
                     3966..3980,4005..4007)
                     /gene="NSD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380989"
     misc_feature    order(3618..3626,3744..3755,3813..3827,3936..3938,
                     3957..3959,3969..3980,4005..4007)
                     /gene="NSD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3675..3677,3705..3707,3717..3719,3750..3764,
                     3846..3854,3897..3899,3930..3944)
                     /gene="NSD3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3831..3833,3972..3974,3978..3980,3993..3995)
                     /gene="NSD3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    4122..4250
                     /gene="NSD3"
                     /note="PHD finger 5 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD5_NSD3; cd15661"
                     /db_xref="CDD:277131"
     misc_feature    order(4122..4124,4149..4163,4179..4181,4233..4235)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277131"
     misc_feature    4245..4394
                     /gene="NSD3"
                     /note="NSD Cys-His rich domain; Region: C5HCH; pfam17982"
                     /db_xref="CDD:465605"
ORIGIN      
        1 ctcccgcggc cccggcggct gcctgcaccc tagccctact ccgggcctcc gtgtgtctcc
       61 tgtgatcgta ctgacacggc cggggggtta gaatggaaca aagtgaaggc ccgatgagag
      121 aaagggaaag ttaaggatgc tggagcagaa caatggattt ctctttctct ttcatgcaag
      181 ggatcatggg aaacacaatt cagcaaccac ctcaactcat tgactccgcc aacatccgtc
      241 aggaggatgc ctttgataac aacagtgaca ttgttgaaga tggtggccag acaccatacg
      301 aagctacctt gcagcaaggc tttcagtacc cacctacaac agaagatctt cctccactca
      361 cgaatggcta cccatcatca atcagcatgt acgaaactca aaccaaatac cagtcctata
      421 accagtatcc caatgggtcg gccaatggct ttggtgcagt tagaaacttt agccccactg
      481 actattacca ttcagaaatt ccaaacacaa gaccacatga aattctggaa aaaccttctc
      541 ctccacagcc accacctcct ccttcagtac cacagactgt gattccaaag aagactggct
      601 cacctgaaat taaactaaaa ataaccaaaa ctatccagaa tggcagggaa ttgtttgagt
      661 cttccctttg tggagacctt ttaaatgaag tacaggcaag tgagcacaca aagtcaaagc
      721 atgaaagcag aaaagaaaag aggaaaaaaa gcaacaagca cgattcatct agatctgaag
      781 agcgcaagtc acacaaaatc cccagattag aaccagagga acaaaataga ccaaatgaga
      841 gggttgacac tgtatcagaa aaaccaagag aagatccagt actgaaagag gagctcccgg
      901 ttcagccgat gttaccttct gttccaacaa cagaagtgtc tgctggtgtt aagttccagg
      961 ttggcgatct tgtttggtct aaggtgggaa cctatccttg gtggccttgt atggtttcaa
     1021 gtgatcccca actcgaggtt cacaccaaaa ttaacacaag aggtgcccgg gaatatcacg
     1081 tccaattttt tagcaaccag ccagagaggg cgtgggttca cgaaaagcgg gtccgagagt
     1141 acaaaggtca caaacagtat gaagaactac tggccgaggc gaccagacaa gccagcaatc
     1201 actctgagaa acagaagatt cggaaacccc ggcctcagag agaacgtgct cagtgggata
     1261 tcggcattgc ccacgcagag aaagcattga aaatgacccg ggaggaaaga attgaacagt
     1321 atacttttat ctacattgat aaacagcctg aggaggcttt atcccaagca aaaaagaatg
     1381 ttgcctccaa ggctgaagtt aaaaaaaccc gaaggccaag atcagtgctg aatactcagc
     1441 cagaacagac cagtgcaggc gaggcggcct cctcactatc aggtactgaa attcggagac
     1501 acagccagag gcggcacact agcgtggaag aggacgaacc acctcccgtt aaagtagcct
     1561 ggaaaacggc agctgcgagg aaatccttac cagcttccat cacaatgcac aaagggagcc
     1621 tggatttgca gaagtgtaac atgtctccag ttgtgaaaat tgaacaagtg tttgctcttc
     1681 agaatgctac aggagatggg aaatttatcg atcagtttgt ttattcaacg aagggaattg
     1741 gtaacaaaac agaaataagt gtcaggggac aagacagact tataatttct acaccaaacc
     1801 agaggaatga aaaggcaact cagaatatgt catctcctga aacagcatct ggtcctgcag
     1861 gctcagtaga aaagaagcaa cagagaagat ccattagaac ccgttccgaa tcagagaaat
     1921 ccactgaggt cgtgccaaag aagaagatca aaaaggagca ggttgaaaca gttcctcagg
     1981 ctacagtgaa gactggatta caaaaaggtg ccagcgagat ttcagattcc tgtaaacctc
     2041 taaagaaaag gagccgcgcc tcaactgatg tagaaatggc tagttccacg tacagagaca
     2101 cgtctgactc cgattccaga ggactgagtg acctgcaggt aggctttgga aagcaagtcg
     2161 atagcccttc agctactgca gacgcagatg cttctgacgt gcagtccgtg gattcaagtt
     2221 tgtcaagaag aggcactgga atgagtagga aggacactgt atgtcagatc tgtgaaagct
     2281 ctggggattc tctgattcct tgcgagggag agtgctgcaa acacttccac ctggagtgcc
     2341 tgggattgac atcattccct gatggaaagt tcatctgcgt cgaatgtaaa actggagagc
     2401 acccgtgttt ttcatgtaaa gtgtctggta cagacgtgaa gcgttgctct gttggtgctt
     2461 gtgggaaatt ttaccatgaa gcctgtgtcc gcaaattccc cactgccatc tttgaatcaa
     2521 aaggattccg ctgtccccag cactgctgct ctgcctgctg tatggagaaa gatatccaca
     2581 aagcaagtaa aggtcgcatg atgagatgtt tgaggtgccc agtagcctac cactctggag
     2641 atgcttgcat tgctgccggc agcatatttc tgtcttccta cgttctcatc tgtagtaatc
     2701 attccaaacg gagcagtaac tcttcctctg ctgtaaatgt aggcttttgt ttcgtttgtg
     2761 caagagggct gatagtgcag gaccattcag accccatgtt cagttcctat gcctataagt
     2821 cccactacct actgaacgaa tcaaatcgtg cagagttgat gaaattacct atgattcctt
     2881 cttcgtcagc ttccaaaaag aaatgtgaga aaggtggaag attgctctgc tgtgagtcgt
     2941 gcccggcttc cttccacccg gagtgcctga gcatagagat gccagaaggc tgctggaatt
     3001 gcaatgactg taaagctggc aagaaactac attacaagca gattgtttgg gtcaaattgg
     3061 gaaattacag gtggtggccg gcggagatct gcaacccccg gtctgtgcca ctcaacatcc
     3121 agggcctcaa gcatgacctg ggggacttcc ccgtgttctt cttcggttct cacgactact
     3181 actgggtaca ccagggcaga gtgttccctt acgtcgaagg agacaaaagc tttgctgagg
     3241 gacagactag tattaacaag accttcaaaa aagcgttgga agaagctgca aaacgtttcc
     3301 aggaattgaa agcgcaaaga gaaagtaaag aagcactaga gattgaaaaa aactcaagaa
     3361 aaccccctcc ttacaaacac atcaaagcta acaaagtgat aggaaaggta cagatccagg
     3421 ttgcagacct gtcagagatt ccccgctgta actgcaagcc ggctgacgag aacccgtgtg
     3481 gcttggagtc cgagtgcctg aacagaatgc tgcagtatga gtgtcacccg caggtgtgcc
     3541 cggcagggga gcgctgccag aaccagtgct tcaccaagag gctctacccg gacgcagaaa
     3601 tcatcaagac agagcggaga ggctggggcc tcaggaccaa aaggagcatc aagaagggtg
     3661 aatttgtaaa tgaatatgtt ggcgaattaa ttgatgagga agaatgcaga ttgcgaatca
     3721 agcgagccca cgagaacagt gtaactaatt tttatatgtt aactgttacc aaggaccgta
     3781 tcattgacgc tggcccgaag ggaaattatt ctcgctttat gaaccacagt tgtaatccaa
     3841 actgtgaaac acaaaagtgg acggtgaatg gagatgttcg agttggcctt tttgctcttt
     3901 gtgacattcc tgcagggatg gagctaacat ttaattacaa cctggactgt ctgggcaatg
     3961 gcaggacgga gtgccactgc ggggcagaga actgcagtgg tttcctcggc gtgcggccaa
     4021 agtcggcatg tgcgtccaca actgaagaaa aggcaaaaaa cgctaagctg aagcagaaga
     4081 gacgaaaaat caaaacagag ccgaagcagc tgcatgaaga tcactgcttc cagtgcgggg
     4141 acagcggcga gctggtcatg tgcgacagga aggattgccc caaagcctac cacctgctct
     4201 gcctcaacct gccccagccg ccctacggaa agtgggagtg cccgtggcat cagtgcgatg
     4261 agtgcagcgg cgcagctgtg tccttctgtg agttctgtcc acgttcgttt tgcaaagatc
     4321 atgaaaaggg ggctctggtg ccctccgccc tggaaggccg tctctgctgc tctgaacatg
     4381 accctgtatc tcccgtgtca cccgaatact ggagcaagat caaatgtaaa ttggaatcac
     4441 aggatcatgg agaagaagtc aaagaataaa tgggcagtga tttccttctt tttttattga
     4501 aacgaagaaa ggaaaagaaa aaagagaatg agttagtaca agaagagacc gctgcagtgc
     4561 atacagcctt ggccatcagc gctgccctat taaagtgaag atggggaacc aggccgtgca
     4621 ggcagaagcc gttggtggga tctggttttt cagtttcgtc ctgtcagctt ggggattctt
     4681 ttgtggaggg ttaggttccc ttggtctttt cttgcctttt attgtgcttc aatgcctttg
     4741 cagctggcaa aagagatgtc ttcgctttta aaataagaac aaagagaagt agttctgtta
     4801 atgagataaa tttaaagtct aggatgtgtt ccttgggtgt aaaaagcaaa agtagccatc
     4861 attcctttat ttattttcat ttttaaaaat tttgagaagt gtagttcaga tagtctaatc
     4921 tgtgtgtgtg tgtgtctttg tgtgtgtgtg tgtgtgtgtg tgtgttttaa gtaggaattg
     4981 cagaaagccc tctagaaaag ggtatggtgg tcttacctct ttcctgagca gtagggaggc
     5041 tggcttcgct ttcccttcca gacgcctctc gtagtcttag agaagggctc tgtgggagta
     5101 ttgaatctgg cctcttgaaa tcaaaaggcc tcagtgaata ttacctctgt ggtcttaaac
     5161 taggtgggct ttccgatata actttaccta gaaaggtata taatgtggtt gttggttttt
     5221 tgttctggag aaaaaaagaa atggatgccc tcactgagtc tgaagcgttc tccactgata
     5281 atgggtgttt ttgatgaagt gcgtctctgt ggatatgaat acagagttag aatggtcatt
     5341 cctgttgtct tgacacactg gtaaaggcag ctaaagggag ttgaaaggca cagaccaaaa
     5401 gttgggtcaa ataagcacca ttttctatcc aatttaatgt acaccctggt ctgacttgga
     5461 gagaattacg ggcattttaa ttttctgtct ctgctttcct ctcccaagca aacattccct
     5521 ttgtcagctg accactcagt cacgtgtcct ggtgaaagct acacggatga atttgaactg
     5581 tatttggata gatcttcttg ttcagttccg aatttggggg tgaaagtggt agcacttgca
     5641 cttctacagg gtaaaggaga gccacagaaa cacacttcac ggcaggaagc acttagggag
     5701 agctccacag aaagcagtga tagcaggaat ggttggagct cagagacgca agtgaaccgg
     5761 aatatctgcc cacagaactc actggctttg aatgcctagg aatatgtata ttccaggatt
     5821 cccttatgaa tgaattagtc ccgtcagaca ttgttgtaac actgcactaa gtagaagcct
     5881 aggtttagct tgaatgaacg tcagcttctc tgtgaatttt gactgctaac aattgccggt
     5941 acctggtagc atttattttc cctcaggaag tacccagtga ccttataaag gcagggaaga
     6001 tagatgctcc acagcattcc ttcagttgtg ctgtgtgttc cttttcctta tcaatttaca
     6061 actcttctct ggaaaaaaga agaaaaaaat ctgttttgtg cttctttttt attttctttg
     6121 tatgtaaatg tgcaattata ctggattttt tcttgttaaa aaaaaaaaaa aagacaaaca
     6181 aaaaacacta caattccttt acttaagctc ctaaactgcc acttgcctga ttccagcaag
     6241 taattctgag gtaacttatt gggcctccag taattctgtt gattagatat ggtcccaaaa
     6301 gaaagagcaa gatagaaaat gctatatgtg ttaccaaatg cgactgctac aagtcacatg
     6361 aattacagct caccaaaaca ctaaagtttg ctcttgagca atcatatagt ttgatgtcct
     6421 tttaaaaaat aatttaagaa aatctaggtt ttatcatact aaaactttat tttatatatg
     6481 tatatgataa atgtttgctt ttttaaactt actaacatga aggatttcct ttaatatctg
     6541 aaatgcacct cgtgttgaaa cggtatccaa catggaatct tatctccttg ctttgttttg
     6601 gacttagtgc tatttaatat ctggtgactt ttatatggta agccagggta tatcctgtat
     6661 actacaaata ccttaggttt aagtattttt atgcagcttc ttcattgtgt cacattttgt
     6721 ttgtgtatct gtagcagagc tccgctgggg ggtgctacag cggagggggg gtggggggtt
     6781 ggctaatagg gttgttctgc catttcagaa atcagggcgg aaaacaccat cgctgaccgc
     6841 agccatgggt cttggtccgc gagtgtcctt taacggtctg gaacgtggct ttagtcctgg
     6901 cagtgccagg gagctctcct cacacctcgt actgttgcct agtttgtata ttttaaaggt
     6961 gcaggctatg gaagcagaaa aagaataagt tgtgctttat atgtgcatag tatccatgca
     7021 gggtgcttgt ctgtgcttca ccaatgaaat tttgcaaaag acatgttgct cactgatagc
     7081 tagaagttgt tatttgttaa cttttaaatc tgtctgtggt cagagcataa atggttgggt
     7141 tttaattctt gtccgaaaat gaaataactt aaagcagcat gggataacgg tggcattttt
     7201 tttttaacca tatgttggtt ctttggtgga agaagcgaac gtaagatttt tgataatcag
     7261 cataaatctt cagaaatcag atctgtaaga gctagaggtg aaatcctgga ggccttccag
     7321 gccctgcacc agagggggcg tgaggaatcc tgccgctggc tggcaaggga ggggtggacg
     7381 gccctgtgct cccggcaggc caggcagaag cagctggagg gagtgagtca cttcttgaat
     7441 atctaatcgg ggctggaatt aggagtgggg tgggttttat tttcattttt cttttaacaa
     7501 gttcccaccc tatcctaatc ctcagaaatt ctctggccta agctataaaa taggctgact
     7561 tttagaatca ttgaaacttg gagatttctg tgtgttcaaa tcaggaacac atctaaaaac
     7621 taaaaaaaaa aaaaaaaaaa aaaaataagg cagggggaag gctgctcccg gctcccagct
     7681 gccatttccc cagagtattt ggaggcacgc ctgtgaataa cgctgggaaa ctcacaacat
     7741 cgagatgatc gcggaaagga ctcagacagg gcggctgttg gacacctttc tttcctgact
     7801 caggaagtag agtttccctt ctgagtagct cgctgcatgg tgtgttccag tcagggtcca
     7861 gcccagatct gcagtttgga aacagatggg ccagctgtgt ggagcgcagt ctctggactc
     7921 ccggggattt gttgcttgtc tctcatttca ttttaaaaca gaaagctctt ctttagcatt
     7981 caccttaaag tcaaggtacc gccgcatgcc atgtcccact aggataagag aacaagttac
     8041 cgtggcgtct tgacagcttg ggaagctcac actcgatgtc cttctacatt gggaagttgc
     8101 ttgtgctggg cagtgcaaat tagacttgaa ttacttctta aaaggctgat gtgtccagcc
     8161 tcctcattgt ccgagctgct gcagacaaga tcacttggaa caacttcctt tggcctcagg
     8221 ccacctagaa ttggtctctg gttatttgta aacaaacagt agaactcgct tccctttcca
     8281 gataggctcg ggaatagata taattagaca gctttgccct atattgacag atacgaagag
     8341 ttgggaattt gtatatactg aaatctactg acatttatcc ggggtggggt acagggagaa
     8401 agggggttac agtagggtag gggagggggt gtagtgttta ccacaggtac gaagtagcca
     8461 ctttaacact gagacctctg cctcattgaa ttcaggtttt ttaagtactt gaaactcctc
     8521 agattctcct tattttacag ttactttaag atttatgaag tagaaagcat tgttttgtat
     8581 actgttttgt ctcttaccct cttgaacttg gattaaaggc aaagttctgc agacggaagt
     8641 gtccacagta gttctctcag attcagtgca cacattcggg gaagagactc ctgcatgaaa
     8701 taccagcagc atttatacga gtacttcata tgtatgttct ctgttttgtt attttgtcaa
     8761 ccttatcccc aagcacctct tctttccttt taatatatgc ctgcgtaggg aaaaaaacaa
     8821 aaatttgcac ttatgttact ctcctgaaat gctgggtgta acctgtgtgt ttcaaaccca
     8881 tttccgttct tttcagtcca ttgcttaagt gacaagttca ggttcgtgtg gcacatatgt
     8941 acgaaggagg aagagaatta cctgtccttt ggtggcgtcc cagagtcatt aacgtttaag
     9001 aaaaagggaa aagatgaata gttaccaaag tcatttattc agtccttcgt tttcttatgt
     9061 gacatcactg cacctgctag ttggcaagaa agcaccctcg ggtttccctt ccccacctgc
     9121 cacagactta tgtgtgtgaa tgcctctcgg tatccatcag atgacctaat aaatgaggga
     9181 ttcatacagt attcttgtca gtttagaagt ggactggata aaatttactt ttactttgtt
     9241 gtcactaata ttgctcttta tctcatttgt gctgtcacat gccctgtgtt taaaaaaaaa
     9301 aaaaaaaaga aaatcatgtt gccactgata accaagatgc taattgatga ctacaactgg
     9361 ttctttttat atacaagggt gtgtgcataa ttggaattga taggagaaat tcatttgtat
     9421 ccacttgtga tattgcacaa caaaacacag atacctacag attctgctct catttcctcg
     9481 tgatctttat gataattacc tttgtagatt ggttatttct gtactttatc tgtaataaac
     9541 tttgtagatc ctgtgaactg ttattttttg cctaaatccc ttgagacttg agtctttaat
     9601 aacaaagcat caatattcac taagtcaatc tctttcgagt ttctgtgact tggctagaag
     9661 ctcttgacac tcaagattag tgttcatttt ccctgggggt attccactag ggcattactg
     9721 tataatgact tgatgttgcc acatagactt caagatacat gatatttggg ggattctgtt
     9781 gattggccta tgttttattg catagtgtga gacgtgtaaa gcttggttaa cctgtatata
     9841 gatagcttat tgttgactag ttacggtgta gtagcattgc ctgtaatatt taagcttctt
     9901 actactgtgt gtgctggtag gaacatataa tttttgtaca ttatatttac tgagatgctg
     9961 cctttcttat tttacaaata ctttggaatt caaatgtgtt ttttgcttcc gtgaggatta
    10021 atttggaaag gtttttaatg acattccact gatttcagat tttgcttgag gttgacttca
    10081 ataaattgtc ccgtatgttg caaa
//
LOCUS       XM_032618270           10080 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X2, mRNA.
ACCESSION   XM_032618270
VERSION     XM_032618270.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10080
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10080
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746681"
     CDS             129..4445
                     /gene="NSD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD3 isoform
                     X1"
                     /protein_id="XP_032474161.1"
                     /db_xref="GeneID:116746681"
                     /translation="MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNNSDIVEDG
                     GQTPYEATLQQGFQYPPTTEDLPPLTNGYPSSISMYETQTKYQSYNQYPNGSANGFGA
                     VRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPPPSVPQTVIPKKTGSPEIKLKITKT
                     IQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPR
                     LEPEEQNRPNERVDTVSEKPREDPVLKEELPVQPMLPSVPTTEVSAGVKFQVGDLVWS
                     KVGTYPWWPCMVSSDPQLEVHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHK
                     QYEELLAEATRQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF
                     IYIDKQPEEALSQAKKNVASKAEVKKTRRPRSVLNTQPEQTSAGEAASSLSGTEIRRH
                     SQRRHTSVEEDEPPPVKVAWKTAAARKSLPASITMHKGSLDLQKCNMSPVVKIEQVFA
                     LQNATGDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISTPNQRNEKATQNMSSPETAS
                     GPAGSVEKKQQRRSIRTRSESEKSTEVVPKKKIKKEQVETVPQATVKTGLQKGASEIS
                     DSCKPLKKRSRASTDVEMASSTYRDTSDSDSRGLSDLQVGFGKQVDSPSATADADASD
                     VQSVDSSLSRRGTGMSRKDTVCQICESSGDSLIPCEGECCKHFHLECLGLTSFPDGKF
                     ICVECKTGEHPCFSCKVSGTDVKRCSVGACGKFYHEACVRKFPTAIFESKGFRCPQHC
                     CSACCMEKDIHKASKGRMMRCLRCPVAYHSGDACIAAGSIFLSSYVLICSNHSKRSSN
                     SSSAVNVGFCFVCARGLIVQDHSDPMFSSYAYKSHYLLNESNRAELMKLPMIPSSSAS
                     KKKCEKGGRLLCCESCPASFHPECLSIEMPEGCWNCNDCKAGKKLHYKQIVWVKLGNY
                     RWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEG
                     QTSINKTFKKALEEAAKRFQELKAQRESKEALEIEKNSRKPPPYKHIKANKVIGKVQI
                     QVADLSEIPRCNCKPADENPCGLESECLNRMLQYECHPQVCPAGERCQNQCFTKRLYP
                     DAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENSVTNFYMLT
                     VTKDRIIDAGPKGNYSRFMNHSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNY
                     NLDCLGNGRTECHCGAENCSGFLGVRPKSACASTTEEKAKNAKLKQKRRKIKTEPKQL
                     HEDHCFQCGDSGELVMCDRKDCPKAYHLLCLNLPQPPYGKWECPWHQCDECSGAAVSF
                     CEFCPRSFCKDHEKGALVPSALEGRLCCSEHDPVSPVSPEYWSKIKCKLESQDHGEEV
                     KE"
     misc_feature    930..1319
                     /gene="NSD3"
                     /note="first PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt1; cd20163"
                     /db_xref="CDD:438991"
     misc_feature    order(969..971,978..980,1062..1064)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438991"
     misc_feature    972..983
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438991"
     misc_feature    order(1173..1181,1188..1193)
                     /gene="NSD3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438991"
     misc_feature    <1932..2366
                     /gene="NSD3"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; Region: TNG2;
                     COG5034"
                     /db_xref="CDD:227367"
     misc_feature    2235..2366
                     /gene="NSD3"
                     /note="PHD finger 1 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD1_NSD3; cd15649"
                     /db_xref="CDD:277119"
     misc_feature    order(2235..2237,2265..2279,2292..2294,2346..2348)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277119"
     misc_feature    2379..2519
                     /gene="NSD3"
                     /note="PHD finger 2 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD2_NSD3; cd15652"
                     /db_xref="CDD:277122"
     misc_feature    order(2379..2381,2409..2423,2439..2441,2502..2504)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277122"
     misc_feature    2520..2669
                     /gene="NSD3"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    order(2520..2522,2574..2585,2595..2597,2661..2663)
                     /gene="NSD3"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276966"
     misc_feature    2880..2987
                     /gene="NSD3"
                     /note="PHD finger 4 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD4_NSD3; cd15658"
                     /db_xref="CDD:277128"
     misc_feature    order(2895..2909,2919..2921,2970..2972)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277128"
     misc_feature    3006..3290
                     /gene="NSD3"
                     /note="second PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt2; cd20166"
                     /db_xref="CDD:438994"
     misc_feature    order(3042..3044,3051..3053,3135..3137)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438994"
     misc_feature    3045..3056
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438994"
     misc_feature    3441..3557
                     /gene="NSD3"
                     /note="AWS domain; Region: AWS; pfam17907"
                     /db_xref="CDD:465559"
     misc_feature    3561..3986
                     /gene="NSD3"
                     /note="SET domain (including post-SET domain) found in
                     nuclear receptor-binding SET domain-containing protein 3
                     (NSD3) and similar proteins; Region: SET_NSD3; cd19212"
                     /db_xref="CDD:380989"
     misc_feature    order(3594..3602,3651..3653,3681..3683,3693..3695,
                     3720..3740,3789..3803,3822..3830,3873..3875,3906..3938,
                     3942..3956,3981..3983)
                     /gene="NSD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380989"
     misc_feature    order(3594..3602,3720..3731,3789..3803,3912..3914,
                     3933..3935,3945..3956,3981..3983)
                     /gene="NSD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3651..3653,3681..3683,3693..3695,3726..3740,
                     3822..3830,3873..3875,3906..3920)
                     /gene="NSD3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3807..3809,3948..3950,3954..3956,3969..3971)
                     /gene="NSD3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    4098..4226
                     /gene="NSD3"
                     /note="PHD finger 5 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD5_NSD3; cd15661"
                     /db_xref="CDD:277131"
     misc_feature    order(4098..4100,4125..4139,4155..4157,4209..4211)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277131"
     misc_feature    4221..4370
                     /gene="NSD3"
                     /note="NSD Cys-His rich domain; Region: C5HCH; pfam17982"
                     /db_xref="CDD:465605"
ORIGIN      
        1 tgccagggag gcgtccgagg agtctgccat ccgagactgt accccaagcc tccggtcgga
       61 aatcgctgcc acacgcagag cccggcccga tgagagaaag ggaaagttaa ggatgctgga
      121 gcagaacaat ggatttctct ttctctttca tgcaagggat catgggaaac acaattcagc
      181 aaccacctca actcattgac tccgccaaca tccgtcagga ggatgccttt gataacaaca
      241 gtgacattgt tgaagatggt ggccagacac catacgaagc taccttgcag caaggctttc
      301 agtacccacc tacaacagaa gatcttcctc cactcacgaa tggctaccca tcatcaatca
      361 gcatgtacga aactcaaacc aaataccagt cctataacca gtatcccaat gggtcggcca
      421 atggctttgg tgcagttaga aactttagcc ccactgacta ttaccattca gaaattccaa
      481 acacaagacc acatgaaatt ctggaaaaac cttctcctcc acagccacca cctcctcctt
      541 cagtaccaca gactgtgatt ccaaagaaga ctggctcacc tgaaattaaa ctaaaaataa
      601 ccaaaactat ccagaatggc agggaattgt ttgagtcttc cctttgtgga gaccttttaa
      661 atgaagtaca ggcaagtgag cacacaaagt caaagcatga aagcagaaaa gaaaagagga
      721 aaaaaagcaa caagcacgat tcatctagat ctgaagagcg caagtcacac aaaatcccca
      781 gattagaacc agaggaacaa aatagaccaa atgagagggt tgacactgta tcagaaaaac
      841 caagagaaga tccagtactg aaagaggagc tcccggttca gccgatgtta ccttctgttc
      901 caacaacaga agtgtctgct ggtgttaagt tccaggttgg cgatcttgtt tggtctaagg
      961 tgggaaccta tccttggtgg ccttgtatgg tttcaagtga tccccaactc gaggttcaca
     1021 ccaaaattaa cacaagaggt gcccgggaat atcacgtcca attttttagc aaccagccag
     1081 agagggcgtg ggttcacgaa aagcgggtcc gagagtacaa aggtcacaaa cagtatgaag
     1141 aactactggc cgaggcgacc agacaagcca gcaatcactc tgagaaacag aagattcgga
     1201 aaccccggcc tcagagagaa cgtgctcagt gggatatcgg cattgcccac gcagagaaag
     1261 cattgaaaat gacccgggag gaaagaattg aacagtatac ttttatctac attgataaac
     1321 agcctgagga ggctttatcc caagcaaaaa agaatgttgc ctccaaggct gaagttaaaa
     1381 aaacccgaag gccaagatca gtgctgaata ctcagccaga acagaccagt gcaggcgagg
     1441 cggcctcctc actatcaggt actgaaattc ggagacacag ccagaggcgg cacactagcg
     1501 tggaagagga cgaaccacct cccgttaaag tagcctggaa aacggcagct gcgaggaaat
     1561 ccttaccagc ttccatcaca atgcacaaag ggagcctgga tttgcagaag tgtaacatgt
     1621 ctccagttgt gaaaattgaa caagtgtttg ctcttcagaa tgctacagga gatgggaaat
     1681 ttatcgatca gtttgtttat tcaacgaagg gaattggtaa caaaacagaa ataagtgtca
     1741 ggggacaaga cagacttata atttctacac caaaccagag gaatgaaaag gcaactcaga
     1801 atatgtcatc tcctgaaaca gcatctggtc ctgcaggctc agtagaaaag aagcaacaga
     1861 gaagatccat tagaacccgt tccgaatcag agaaatccac tgaggtcgtg ccaaagaaga
     1921 agatcaaaaa ggagcaggtt gaaacagttc ctcaggctac agtgaagact ggattacaaa
     1981 aaggtgccag cgagatttca gattcctgta aacctctaaa gaaaaggagc cgcgcctcaa
     2041 ctgatgtaga aatggctagt tccacgtaca gagacacgtc tgactccgat tccagaggac
     2101 tgagtgacct gcaggtaggc tttggaaagc aagtcgatag cccttcagct actgcagacg
     2161 cagatgcttc tgacgtgcag tccgtggatt caagtttgtc aagaagaggc actggaatga
     2221 gtaggaagga cactgtatgt cagatctgtg aaagctctgg ggattctctg attccttgcg
     2281 agggagagtg ctgcaaacac ttccacctgg agtgcctggg attgacatca ttccctgatg
     2341 gaaagttcat ctgcgtcgaa tgtaaaactg gagagcaccc gtgtttttca tgtaaagtgt
     2401 ctggtacaga cgtgaagcgt tgctctgttg gtgcttgtgg gaaattttac catgaagcct
     2461 gtgtccgcaa attccccact gccatctttg aatcaaaagg attccgctgt ccccagcact
     2521 gctgctctgc ctgctgtatg gagaaagata tccacaaagc aagtaaaggt cgcatgatga
     2581 gatgtttgag gtgcccagta gcctaccact ctggagatgc ttgcattgct gccggcagca
     2641 tatttctgtc ttcctacgtt ctcatctgta gtaatcattc caaacggagc agtaactctt
     2701 cctctgctgt aaatgtaggc ttttgtttcg tttgtgcaag agggctgata gtgcaggacc
     2761 attcagaccc catgttcagt tcctatgcct ataagtccca ctacctactg aacgaatcaa
     2821 atcgtgcaga gttgatgaaa ttacctatga ttccttcttc gtcagcttcc aaaaagaaat
     2881 gtgagaaagg tggaagattg ctctgctgtg agtcgtgccc ggcttccttc cacccggagt
     2941 gcctgagcat agagatgcca gaaggctgct ggaattgcaa tgactgtaaa gctggcaaga
     3001 aactacatta caagcagatt gtttgggtca aattgggaaa ttacaggtgg tggccggcgg
     3061 agatctgcaa cccccggtct gtgccactca acatccaggg cctcaagcat gacctggggg
     3121 acttccccgt gttcttcttc ggttctcacg actactactg ggtacaccag ggcagagtgt
     3181 tcccttacgt cgaaggagac aaaagctttg ctgagggaca gactagtatt aacaagacct
     3241 tcaaaaaagc gttggaagaa gctgcaaaac gtttccagga attgaaagcg caaagagaaa
     3301 gtaaagaagc actagagatt gaaaaaaact caagaaaacc ccctccttac aaacacatca
     3361 aagctaacaa agtgatagga aaggtacaga tccaggttgc agacctgtca gagattcccc
     3421 gctgtaactg caagccggct gacgagaacc cgtgtggctt ggagtccgag tgcctgaaca
     3481 gaatgctgca gtatgagtgt cacccgcagg tgtgcccggc aggggagcgc tgccagaacc
     3541 agtgcttcac caagaggctc tacccggacg cagaaatcat caagacagag cggagaggct
     3601 ggggcctcag gaccaaaagg agcatcaaga agggtgaatt tgtaaatgaa tatgttggcg
     3661 aattaattga tgaggaagaa tgcagattgc gaatcaagcg agcccacgag aacagtgtaa
     3721 ctaattttta tatgttaact gttaccaagg accgtatcat tgacgctggc ccgaagggaa
     3781 attattctcg ctttatgaac cacagttgta atccaaactg tgaaacacaa aagtggacgg
     3841 tgaatggaga tgttcgagtt ggcctttttg ctctttgtga cattcctgca gggatggagc
     3901 taacatttaa ttacaacctg gactgtctgg gcaatggcag gacggagtgc cactgcgggg
     3961 cagagaactg cagtggtttc ctcggcgtgc ggccaaagtc ggcatgtgcg tccacaactg
     4021 aagaaaaggc aaaaaacgct aagctgaagc agaagagacg aaaaatcaaa acagagccga
     4081 agcagctgca tgaagatcac tgcttccagt gcggggacag cggcgagctg gtcatgtgcg
     4141 acaggaagga ttgccccaaa gcctaccacc tgctctgcct caacctgccc cagccgccct
     4201 acggaaagtg ggagtgcccg tggcatcagt gcgatgagtg cagcggcgca gctgtgtcct
     4261 tctgtgagtt ctgtccacgt tcgttttgca aagatcatga aaagggggct ctggtgccct
     4321 ccgccctgga aggccgtctc tgctgctctg aacatgaccc tgtatctccc gtgtcacccg
     4381 aatactggag caagatcaaa tgtaaattgg aatcacagga tcatggagaa gaagtcaaag
     4441 aataaatggg cagtgatttc cttctttttt tattgaaacg aagaaaggaa aagaaaaaag
     4501 agaatgagtt agtacaagaa gagaccgctg cagtgcatac agccttggcc atcagcgctg
     4561 ccctattaaa gtgaagatgg ggaaccaggc cgtgcaggca gaagccgttg gtgggatctg
     4621 gtttttcagt ttcgtcctgt cagcttgggg attcttttgt ggagggttag gttcccttgg
     4681 tcttttcttg ccttttattg tgcttcaatg cctttgcagc tggcaaaaga gatgtcttcg
     4741 cttttaaaat aagaacaaag agaagtagtt ctgttaatga gataaattta aagtctagga
     4801 tgtgttcctt gggtgtaaaa agcaaaagta gccatcattc ctttatttat tttcattttt
     4861 aaaaattttg agaagtgtag ttcagatagt ctaatctgtg tgtgtgtgtg tctttgtgtg
     4921 tgtgtgtgtg tgtgtgtgtg ttttaagtag gaattgcaga aagccctcta gaaaagggta
     4981 tggtggtctt acctctttcc tgagcagtag ggaggctggc ttcgctttcc cttccagacg
     5041 cctctcgtag tcttagagaa gggctctgtg ggagtattga atctggcctc ttgaaatcaa
     5101 aaggcctcag tgaatattac ctctgtggtc ttaaactagg tgggctttcc gatataactt
     5161 tacctagaaa ggtatataat gtggttgttg gttttttgtt ctggagaaaa aaagaaatgg
     5221 atgccctcac tgagtctgaa gcgttctcca ctgataatgg gtgtttttga tgaagtgcgt
     5281 ctctgtggat atgaatacag agttagaatg gtcattcctg ttgtcttgac acactggtaa
     5341 aggcagctaa agggagttga aaggcacaga ccaaaagttg ggtcaaataa gcaccatttt
     5401 ctatccaatt taatgtacac cctggtctga cttggagaga attacgggca ttttaatttt
     5461 ctgtctctgc tttcctctcc caagcaaaca ttccctttgt cagctgacca ctcagtcacg
     5521 tgtcctggtg aaagctacac ggatgaattt gaactgtatt tggatagatc ttcttgttca
     5581 gttccgaatt tgggggtgaa agtggtagca cttgcacttc tacagggtaa aggagagcca
     5641 cagaaacaca cttcacggca ggaagcactt agggagagct ccacagaaag cagtgatagc
     5701 aggaatggtt ggagctcaga gacgcaagtg aaccggaata tctgcccaca gaactcactg
     5761 gctttgaatg cctaggaata tgtatattcc aggattccct tatgaatgaa ttagtcccgt
     5821 cagacattgt tgtaacactg cactaagtag aagcctaggt ttagcttgaa tgaacgtcag
     5881 cttctctgtg aattttgact gctaacaatt gccggtacct ggtagcattt attttccctc
     5941 aggaagtacc cagtgacctt ataaaggcag ggaagataga tgctccacag cattccttca
     6001 gttgtgctgt gtgttccttt tccttatcaa tttacaactc ttctctggaa aaaagaagaa
     6061 aaaaatctgt tttgtgcttc ttttttattt tctttgtatg taaatgtgca attatactgg
     6121 attttttctt gttaaaaaaa aaaaaaaaga caaacaaaaa acactacaat tcctttactt
     6181 aagctcctaa actgccactt gcctgattcc agcaagtaat tctgaggtaa cttattgggc
     6241 ctccagtaat tctgttgatt agatatggtc ccaaaagaaa gagcaagata gaaaatgcta
     6301 tatgtgttac caaatgcgac tgctacaagt cacatgaatt acagctcacc aaaacactaa
     6361 agtttgctct tgagcaatca tatagtttga tgtcctttta aaaaataatt taagaaaatc
     6421 taggttttat catactaaaa ctttatttta tatatgtata tgataaatgt ttgctttttt
     6481 aaacttacta acatgaagga tttcctttaa tatctgaaat gcacctcgtg ttgaaacggt
     6541 atccaacatg gaatcttatc tccttgcttt gttttggact tagtgctatt taatatctgg
     6601 tgacttttat atggtaagcc agggtatatc ctgtatacta caaatacctt aggtttaagt
     6661 atttttatgc agcttcttca ttgtgtcaca ttttgtttgt gtatctgtag cagagctccg
     6721 ctggggggtg ctacagcgga gggggggtgg ggggttggct aatagggttg ttctgccatt
     6781 tcagaaatca gggcggaaaa caccatcgct gaccgcagcc atgggtcttg gtccgcgagt
     6841 gtcctttaac ggtctggaac gtggctttag tcctggcagt gccagggagc tctcctcaca
     6901 cctcgtactg ttgcctagtt tgtatatttt aaaggtgcag gctatggaag cagaaaaaga
     6961 ataagttgtg ctttatatgt gcatagtatc catgcagggt gcttgtctgt gcttcaccaa
     7021 tgaaattttg caaaagacat gttgctcact gatagctaga agttgttatt tgttaacttt
     7081 taaatctgtc tgtggtcaga gcataaatgg ttgggtttta attcttgtcc gaaaatgaaa
     7141 taacttaaag cagcatggga taacggtggc attttttttt taaccatatg ttggttcttt
     7201 ggtggaagaa gcgaacgtaa gatttttgat aatcagcata aatcttcaga aatcagatct
     7261 gtaagagcta gaggtgaaat cctggaggcc ttccaggccc tgcaccagag ggggcgtgag
     7321 gaatcctgcc gctggctggc aagggagggg tggacggccc tgtgctcccg gcaggccagg
     7381 cagaagcagc tggagggagt gagtcacttc ttgaatatct aatcggggct ggaattagga
     7441 gtggggtggg ttttattttc atttttcttt taacaagttc ccaccctatc ctaatcctca
     7501 gaaattctct ggcctaagct ataaaatagg ctgactttta gaatcattga aacttggaga
     7561 tttctgtgtg ttcaaatcag gaacacatct aaaaactaaa aaaaaaaaaa aaaaaaaaaa
     7621 ataaggcagg gggaaggctg ctcccggctc ccagctgcca tttccccaga gtatttggag
     7681 gcacgcctgt gaataacgct gggaaactca caacatcgag atgatcgcgg aaaggactca
     7741 gacagggcgg ctgttggaca cctttctttc ctgactcagg aagtagagtt tcccttctga
     7801 gtagctcgct gcatggtgtg ttccagtcag ggtccagccc agatctgcag tttggaaaca
     7861 gatgggccag ctgtgtggag cgcagtctct ggactcccgg ggatttgttg cttgtctctc
     7921 atttcatttt aaaacagaaa gctcttcttt agcattcacc ttaaagtcaa ggtaccgccg
     7981 catgccatgt cccactagga taagagaaca agttaccgtg gcgtcttgac agcttgggaa
     8041 gctcacactc gatgtccttc tacattggga agttgcttgt gctgggcagt gcaaattaga
     8101 cttgaattac ttcttaaaag gctgatgtgt ccagcctcct cattgtccga gctgctgcag
     8161 acaagatcac ttggaacaac ttcctttggc ctcaggccac ctagaattgg tctctggtta
     8221 tttgtaaaca aacagtagaa ctcgcttccc tttccagata ggctcgggaa tagatataat
     8281 tagacagctt tgccctatat tgacagatac gaagagttgg gaatttgtat atactgaaat
     8341 ctactgacat ttatccgggg tggggtacag ggagaaaggg ggttacagta gggtagggga
     8401 gggggtgtag tgtttaccac aggtacgaag tagccacttt aacactgaga cctctgcctc
     8461 attgaattca ggttttttaa gtacttgaaa ctcctcagat tctccttatt ttacagttac
     8521 tttaagattt atgaagtaga aagcattgtt ttgtatactg ttttgtctct taccctcttg
     8581 aacttggatt aaaggcaaag ttctgcagac ggaagtgtcc acagtagttc tctcagattc
     8641 agtgcacaca ttcggggaag agactcctgc atgaaatacc agcagcattt atacgagtac
     8701 ttcatatgta tgttctctgt tttgttattt tgtcaacctt atccccaagc acctcttctt
     8761 tccttttaat atatgcctgc gtagggaaaa aaacaaaaat ttgcacttat gttactctcc
     8821 tgaaatgctg ggtgtaacct gtgtgtttca aacccatttc cgttcttttc agtccattgc
     8881 ttaagtgaca agttcaggtt cgtgtggcac atatgtacga aggaggaaga gaattacctg
     8941 tcctttggtg gcgtcccaga gtcattaacg tttaagaaaa agggaaaaga tgaatagtta
     9001 ccaaagtcat ttattcagtc cttcgttttc ttatgtgaca tcactgcacc tgctagttgg
     9061 caagaaagca ccctcgggtt tcccttcccc acctgccaca gacttatgtg tgtgaatgcc
     9121 tctcggtatc catcagatga cctaataaat gagggattca tacagtattc ttgtcagttt
     9181 agaagtggac tggataaaat ttacttttac tttgttgtca ctaatattgc tctttatctc
     9241 atttgtgctg tcacatgccc tgtgtttaaa aaaaaaaaaa aaaagaaaat catgttgcca
     9301 ctgataacca agatgctaat tgatgactac aactggttct ttttatatac aagggtgtgt
     9361 gcataattgg aattgatagg agaaattcat ttgtatccac ttgtgatatt gcacaacaaa
     9421 acacagatac ctacagattc tgctctcatt tcctcgtgat ctttatgata attacctttg
     9481 tagattggtt atttctgtac tttatctgta ataaactttg tagatcctgt gaactgttat
     9541 tttttgccta aatcccttga gacttgagtc tttaataaca aagcatcaat attcactaag
     9601 tcaatctctt tcgagtttct gtgacttggc tagaagctct tgacactcaa gattagtgtt
     9661 cattttccct gggggtattc cactagggca ttactgtata atgacttgat gttgccacat
     9721 agacttcaag atacatgata tttgggggat tctgttgatt ggcctatgtt ttattgcata
     9781 gtgtgagacg tgtaaagctt ggttaacctg tatatagata gcttattgtt gactagttac
     9841 ggtgtagtag cattgcctgt aatatttaag cttcttacta ctgtgtgtgc tggtaggaac
     9901 atataatttt tgtacattat atttactgag atgctgcctt tcttatttta caaatacttt
     9961 ggaattcaaa tgtgtttttt gcttccgtga ggattaattt ggaaaggttt ttaatgacat
    10021 tccactgatt tcagattttg cttgaggttg acttcaataa attgtcccgt atgttgcaaa
//
LOCUS       XM_032618272           10201 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X3, mRNA.
ACCESSION   XM_032618272
VERSION     XM_032618272.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10201
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10201
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 7
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746681"
     CDS             250..4566
                     /gene="NSD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD3 isoform
                     X1"
                     /protein_id="XP_032474163.1"
                     /db_xref="GeneID:116746681"
                     /translation="MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNNSDIVEDG
                     GQTPYEATLQQGFQYPPTTEDLPPLTNGYPSSISMYETQTKYQSYNQYPNGSANGFGA
                     VRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPPPSVPQTVIPKKTGSPEIKLKITKT
                     IQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPR
                     LEPEEQNRPNERVDTVSEKPREDPVLKEELPVQPMLPSVPTTEVSAGVKFQVGDLVWS
                     KVGTYPWWPCMVSSDPQLEVHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHK
                     QYEELLAEATRQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF
                     IYIDKQPEEALSQAKKNVASKAEVKKTRRPRSVLNTQPEQTSAGEAASSLSGTEIRRH
                     SQRRHTSVEEDEPPPVKVAWKTAAARKSLPASITMHKGSLDLQKCNMSPVVKIEQVFA
                     LQNATGDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISTPNQRNEKATQNMSSPETAS
                     GPAGSVEKKQQRRSIRTRSESEKSTEVVPKKKIKKEQVETVPQATVKTGLQKGASEIS
                     DSCKPLKKRSRASTDVEMASSTYRDTSDSDSRGLSDLQVGFGKQVDSPSATADADASD
                     VQSVDSSLSRRGTGMSRKDTVCQICESSGDSLIPCEGECCKHFHLECLGLTSFPDGKF
                     ICVECKTGEHPCFSCKVSGTDVKRCSVGACGKFYHEACVRKFPTAIFESKGFRCPQHC
                     CSACCMEKDIHKASKGRMMRCLRCPVAYHSGDACIAAGSIFLSSYVLICSNHSKRSSN
                     SSSAVNVGFCFVCARGLIVQDHSDPMFSSYAYKSHYLLNESNRAELMKLPMIPSSSAS
                     KKKCEKGGRLLCCESCPASFHPECLSIEMPEGCWNCNDCKAGKKLHYKQIVWVKLGNY
                     RWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEG
                     QTSINKTFKKALEEAAKRFQELKAQRESKEALEIEKNSRKPPPYKHIKANKVIGKVQI
                     QVADLSEIPRCNCKPADENPCGLESECLNRMLQYECHPQVCPAGERCQNQCFTKRLYP
                     DAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENSVTNFYMLT
                     VTKDRIIDAGPKGNYSRFMNHSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNY
                     NLDCLGNGRTECHCGAENCSGFLGVRPKSACASTTEEKAKNAKLKQKRRKIKTEPKQL
                     HEDHCFQCGDSGELVMCDRKDCPKAYHLLCLNLPQPPYGKWECPWHQCDECSGAAVSF
                     CEFCPRSFCKDHEKGALVPSALEGRLCCSEHDPVSPVSPEYWSKIKCKLESQDHGEEV
                     KE"
     misc_feature    1051..1440
                     /gene="NSD3"
                     /note="first PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt1; cd20163"
                     /db_xref="CDD:438991"
     misc_feature    order(1090..1092,1099..1101,1183..1185)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438991"
     misc_feature    1093..1104
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438991"
     misc_feature    order(1294..1302,1309..1314)
                     /gene="NSD3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438991"
     misc_feature    <2053..2487
                     /gene="NSD3"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; Region: TNG2;
                     COG5034"
                     /db_xref="CDD:227367"
     misc_feature    2356..2487
                     /gene="NSD3"
                     /note="PHD finger 1 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD1_NSD3; cd15649"
                     /db_xref="CDD:277119"
     misc_feature    order(2356..2358,2386..2400,2413..2415,2467..2469)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277119"
     misc_feature    2500..2640
                     /gene="NSD3"
                     /note="PHD finger 2 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD2_NSD3; cd15652"
                     /db_xref="CDD:277122"
     misc_feature    order(2500..2502,2530..2544,2560..2562,2623..2625)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277122"
     misc_feature    2641..2790
                     /gene="NSD3"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    order(2641..2643,2695..2706,2716..2718,2782..2784)
                     /gene="NSD3"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276966"
     misc_feature    3001..3108
                     /gene="NSD3"
                     /note="PHD finger 4 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD4_NSD3; cd15658"
                     /db_xref="CDD:277128"
     misc_feature    order(3016..3030,3040..3042,3091..3093)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277128"
     misc_feature    3127..3411
                     /gene="NSD3"
                     /note="second PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt2; cd20166"
                     /db_xref="CDD:438994"
     misc_feature    order(3163..3165,3172..3174,3256..3258)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438994"
     misc_feature    3166..3177
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438994"
     misc_feature    3562..3678
                     /gene="NSD3"
                     /note="AWS domain; Region: AWS; pfam17907"
                     /db_xref="CDD:465559"
     misc_feature    3682..4107
                     /gene="NSD3"
                     /note="SET domain (including post-SET domain) found in
                     nuclear receptor-binding SET domain-containing protein 3
                     (NSD3) and similar proteins; Region: SET_NSD3; cd19212"
                     /db_xref="CDD:380989"
     misc_feature    order(3715..3723,3772..3774,3802..3804,3814..3816,
                     3841..3861,3910..3924,3943..3951,3994..3996,4027..4059,
                     4063..4077,4102..4104)
                     /gene="NSD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380989"
     misc_feature    order(3715..3723,3841..3852,3910..3924,4033..4035,
                     4054..4056,4066..4077,4102..4104)
                     /gene="NSD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3772..3774,3802..3804,3814..3816,3847..3861,
                     3943..3951,3994..3996,4027..4041)
                     /gene="NSD3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3928..3930,4069..4071,4075..4077,4090..4092)
                     /gene="NSD3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    4219..4347
                     /gene="NSD3"
                     /note="PHD finger 5 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD5_NSD3; cd15661"
                     /db_xref="CDD:277131"
     misc_feature    order(4219..4221,4246..4260,4276..4278,4330..4332)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277131"
     misc_feature    4342..4491
                     /gene="NSD3"
                     /note="NSD Cys-His rich domain; Region: C5HCH; pfam17982"
                     /db_xref="CDD:465605"
ORIGIN      
        1 gtggcaaaac gcgctctcgg cctccccagc cggtgacttt tgtgcgcgtt gtgtgttgct
       61 gggctgtgtt tgctgtgctg gggtcccggg gcggggggcg gggtctttgg gttttttttt
      121 ggagcaagcg tgttgcaggc acggggacca agagccttgg cgatccaagt ttatggaagg
      181 aaggcgagaa gaatcgggac acagggcccg atgagagaaa gggaaagtta aggatgctgg
      241 agcagaacaa tggatttctc tttctctttc atgcaaggga tcatgggaaa cacaattcag
      301 caaccacctc aactcattga ctccgccaac atccgtcagg aggatgcctt tgataacaac
      361 agtgacattg ttgaagatgg tggccagaca ccatacgaag ctaccttgca gcaaggcttt
      421 cagtacccac ctacaacaga agatcttcct ccactcacga atggctaccc atcatcaatc
      481 agcatgtacg aaactcaaac caaataccag tcctataacc agtatcccaa tgggtcggcc
      541 aatggctttg gtgcagttag aaactttagc cccactgact attaccattc agaaattcca
      601 aacacaagac cacatgaaat tctggaaaaa ccttctcctc cacagccacc acctcctcct
      661 tcagtaccac agactgtgat tccaaagaag actggctcac ctgaaattaa actaaaaata
      721 accaaaacta tccagaatgg cagggaattg tttgagtctt ccctttgtgg agacctttta
      781 aatgaagtac aggcaagtga gcacacaaag tcaaagcatg aaagcagaaa agaaaagagg
      841 aaaaaaagca acaagcacga ttcatctaga tctgaagagc gcaagtcaca caaaatcccc
      901 agattagaac cagaggaaca aaatagacca aatgagaggg ttgacactgt atcagaaaaa
      961 ccaagagaag atccagtact gaaagaggag ctcccggttc agccgatgtt accttctgtt
     1021 ccaacaacag aagtgtctgc tggtgttaag ttccaggttg gcgatcttgt ttggtctaag
     1081 gtgggaacct atccttggtg gccttgtatg gtttcaagtg atccccaact cgaggttcac
     1141 accaaaatta acacaagagg tgcccgggaa tatcacgtcc aattttttag caaccagcca
     1201 gagagggcgt gggttcacga aaagcgggtc cgagagtaca aaggtcacaa acagtatgaa
     1261 gaactactgg ccgaggcgac cagacaagcc agcaatcact ctgagaaaca gaagattcgg
     1321 aaaccccggc ctcagagaga acgtgctcag tgggatatcg gcattgccca cgcagagaaa
     1381 gcattgaaaa tgacccggga ggaaagaatt gaacagtata cttttatcta cattgataaa
     1441 cagcctgagg aggctttatc ccaagcaaaa aagaatgttg cctccaaggc tgaagttaaa
     1501 aaaacccgaa ggccaagatc agtgctgaat actcagccag aacagaccag tgcaggcgag
     1561 gcggcctcct cactatcagg tactgaaatt cggagacaca gccagaggcg gcacactagc
     1621 gtggaagagg acgaaccacc tcccgttaaa gtagcctgga aaacggcagc tgcgaggaaa
     1681 tccttaccag cttccatcac aatgcacaaa gggagcctgg atttgcagaa gtgtaacatg
     1741 tctccagttg tgaaaattga acaagtgttt gctcttcaga atgctacagg agatgggaaa
     1801 tttatcgatc agtttgttta ttcaacgaag ggaattggta acaaaacaga aataagtgtc
     1861 aggggacaag acagacttat aatttctaca ccaaaccaga ggaatgaaaa ggcaactcag
     1921 aatatgtcat ctcctgaaac agcatctggt cctgcaggct cagtagaaaa gaagcaacag
     1981 agaagatcca ttagaacccg ttccgaatca gagaaatcca ctgaggtcgt gccaaagaag
     2041 aagatcaaaa aggagcaggt tgaaacagtt cctcaggcta cagtgaagac tggattacaa
     2101 aaaggtgcca gcgagatttc agattcctgt aaacctctaa agaaaaggag ccgcgcctca
     2161 actgatgtag aaatggctag ttccacgtac agagacacgt ctgactccga ttccagagga
     2221 ctgagtgacc tgcaggtagg ctttggaaag caagtcgata gcccttcagc tactgcagac
     2281 gcagatgctt ctgacgtgca gtccgtggat tcaagtttgt caagaagagg cactggaatg
     2341 agtaggaagg acactgtatg tcagatctgt gaaagctctg gggattctct gattccttgc
     2401 gagggagagt gctgcaaaca cttccacctg gagtgcctgg gattgacatc attccctgat
     2461 ggaaagttca tctgcgtcga atgtaaaact ggagagcacc cgtgtttttc atgtaaagtg
     2521 tctggtacag acgtgaagcg ttgctctgtt ggtgcttgtg ggaaatttta ccatgaagcc
     2581 tgtgtccgca aattccccac tgccatcttt gaatcaaaag gattccgctg tccccagcac
     2641 tgctgctctg cctgctgtat ggagaaagat atccacaaag caagtaaagg tcgcatgatg
     2701 agatgtttga ggtgcccagt agcctaccac tctggagatg cttgcattgc tgccggcagc
     2761 atatttctgt cttcctacgt tctcatctgt agtaatcatt ccaaacggag cagtaactct
     2821 tcctctgctg taaatgtagg cttttgtttc gtttgtgcaa gagggctgat agtgcaggac
     2881 cattcagacc ccatgttcag ttcctatgcc tataagtccc actacctact gaacgaatca
     2941 aatcgtgcag agttgatgaa attacctatg attccttctt cgtcagcttc caaaaagaaa
     3001 tgtgagaaag gtggaagatt gctctgctgt gagtcgtgcc cggcttcctt ccacccggag
     3061 tgcctgagca tagagatgcc agaaggctgc tggaattgca atgactgtaa agctggcaag
     3121 aaactacatt acaagcagat tgtttgggtc aaattgggaa attacaggtg gtggccggcg
     3181 gagatctgca acccccggtc tgtgccactc aacatccagg gcctcaagca tgacctgggg
     3241 gacttccccg tgttcttctt cggttctcac gactactact gggtacacca gggcagagtg
     3301 ttcccttacg tcgaaggaga caaaagcttt gctgagggac agactagtat taacaagacc
     3361 ttcaaaaaag cgttggaaga agctgcaaaa cgtttccagg aattgaaagc gcaaagagaa
     3421 agtaaagaag cactagagat tgaaaaaaac tcaagaaaac cccctcctta caaacacatc
     3481 aaagctaaca aagtgatagg aaaggtacag atccaggttg cagacctgtc agagattccc
     3541 cgctgtaact gcaagccggc tgacgagaac ccgtgtggct tggagtccga gtgcctgaac
     3601 agaatgctgc agtatgagtg tcacccgcag gtgtgcccgg caggggagcg ctgccagaac
     3661 cagtgcttca ccaagaggct ctacccggac gcagaaatca tcaagacaga gcggagaggc
     3721 tggggcctca ggaccaaaag gagcatcaag aagggtgaat ttgtaaatga atatgttggc
     3781 gaattaattg atgaggaaga atgcagattg cgaatcaagc gagcccacga gaacagtgta
     3841 actaattttt atatgttaac tgttaccaag gaccgtatca ttgacgctgg cccgaaggga
     3901 aattattctc gctttatgaa ccacagttgt aatccaaact gtgaaacaca aaagtggacg
     3961 gtgaatggag atgttcgagt tggccttttt gctctttgtg acattcctgc agggatggag
     4021 ctaacattta attacaacct ggactgtctg ggcaatggca ggacggagtg ccactgcggg
     4081 gcagagaact gcagtggttt cctcggcgtg cggccaaagt cggcatgtgc gtccacaact
     4141 gaagaaaagg caaaaaacgc taagctgaag cagaagagac gaaaaatcaa aacagagccg
     4201 aagcagctgc atgaagatca ctgcttccag tgcggggaca gcggcgagct ggtcatgtgc
     4261 gacaggaagg attgccccaa agcctaccac ctgctctgcc tcaacctgcc ccagccgccc
     4321 tacggaaagt gggagtgccc gtggcatcag tgcgatgagt gcagcggcgc agctgtgtcc
     4381 ttctgtgagt tctgtccacg ttcgttttgc aaagatcatg aaaagggggc tctggtgccc
     4441 tccgccctgg aaggccgtct ctgctgctct gaacatgacc ctgtatctcc cgtgtcaccc
     4501 gaatactgga gcaagatcaa atgtaaattg gaatcacagg atcatggaga agaagtcaaa
     4561 gaataaatgg gcagtgattt ccttcttttt ttattgaaac gaagaaagga aaagaaaaaa
     4621 gagaatgagt tagtacaaga agagaccgct gcagtgcata cagccttggc catcagcgct
     4681 gccctattaa agtgaagatg gggaaccagg ccgtgcaggc agaagccgtt ggtgggatct
     4741 ggtttttcag tttcgtcctg tcagcttggg gattcttttg tggagggtta ggttcccttg
     4801 gtcttttctt gccttttatt gtgcttcaat gcctttgcag ctggcaaaag agatgtcttc
     4861 gcttttaaaa taagaacaaa gagaagtagt tctgttaatg agataaattt aaagtctagg
     4921 atgtgttcct tgggtgtaaa aagcaaaagt agccatcatt cctttattta ttttcatttt
     4981 taaaaatttt gagaagtgta gttcagatag tctaatctgt gtgtgtgtgt gtctttgtgt
     5041 gtgtgtgtgt gtgtgtgtgt gttttaagta ggaattgcag aaagccctct agaaaagggt
     5101 atggtggtct tacctctttc ctgagcagta gggaggctgg cttcgctttc ccttccagac
     5161 gcctctcgta gtcttagaga agggctctgt gggagtattg aatctggcct cttgaaatca
     5221 aaaggcctca gtgaatatta cctctgtggt cttaaactag gtgggctttc cgatataact
     5281 ttacctagaa aggtatataa tgtggttgtt ggttttttgt tctggagaaa aaaagaaatg
     5341 gatgccctca ctgagtctga agcgttctcc actgataatg ggtgtttttg atgaagtgcg
     5401 tctctgtgga tatgaataca gagttagaat ggtcattcct gttgtcttga cacactggta
     5461 aaggcagcta aagggagttg aaaggcacag accaaaagtt gggtcaaata agcaccattt
     5521 tctatccaat ttaatgtaca ccctggtctg acttggagag aattacgggc attttaattt
     5581 tctgtctctg ctttcctctc ccaagcaaac attccctttg tcagctgacc actcagtcac
     5641 gtgtcctggt gaaagctaca cggatgaatt tgaactgtat ttggatagat cttcttgttc
     5701 agttccgaat ttgggggtga aagtggtagc acttgcactt ctacagggta aaggagagcc
     5761 acagaaacac acttcacggc aggaagcact tagggagagc tccacagaaa gcagtgatag
     5821 caggaatggt tggagctcag agacgcaagt gaaccggaat atctgcccac agaactcact
     5881 ggctttgaat gcctaggaat atgtatattc caggattccc ttatgaatga attagtcccg
     5941 tcagacattg ttgtaacact gcactaagta gaagcctagg tttagcttga atgaacgtca
     6001 gcttctctgt gaattttgac tgctaacaat tgccggtacc tggtagcatt tattttccct
     6061 caggaagtac ccagtgacct tataaaggca gggaagatag atgctccaca gcattccttc
     6121 agttgtgctg tgtgttcctt ttccttatca atttacaact cttctctgga aaaaagaaga
     6181 aaaaaatctg ttttgtgctt cttttttatt ttctttgtat gtaaatgtgc aattatactg
     6241 gattttttct tgttaaaaaa aaaaaaaaag acaaacaaaa aacactacaa ttcctttact
     6301 taagctccta aactgccact tgcctgattc cagcaagtaa ttctgaggta acttattggg
     6361 cctccagtaa ttctgttgat tagatatggt cccaaaagaa agagcaagat agaaaatgct
     6421 atatgtgtta ccaaatgcga ctgctacaag tcacatgaat tacagctcac caaaacacta
     6481 aagtttgctc ttgagcaatc atatagtttg atgtcctttt aaaaaataat ttaagaaaat
     6541 ctaggtttta tcatactaaa actttatttt atatatgtat atgataaatg tttgcttttt
     6601 taaacttact aacatgaagg atttccttta atatctgaaa tgcacctcgt gttgaaacgg
     6661 tatccaacat ggaatcttat ctccttgctt tgttttggac ttagtgctat ttaatatctg
     6721 gtgactttta tatggtaagc cagggtatat cctgtatact acaaatacct taggtttaag
     6781 tatttttatg cagcttcttc attgtgtcac attttgtttg tgtatctgta gcagagctcc
     6841 gctggggggt gctacagcgg agggggggtg gggggttggc taatagggtt gttctgccat
     6901 ttcagaaatc agggcggaaa acaccatcgc tgaccgcagc catgggtctt ggtccgcgag
     6961 tgtcctttaa cggtctggaa cgtggcttta gtcctggcag tgccagggag ctctcctcac
     7021 acctcgtact gttgcctagt ttgtatattt taaaggtgca ggctatggaa gcagaaaaag
     7081 aataagttgt gctttatatg tgcatagtat ccatgcaggg tgcttgtctg tgcttcacca
     7141 atgaaatttt gcaaaagaca tgttgctcac tgatagctag aagttgttat ttgttaactt
     7201 ttaaatctgt ctgtggtcag agcataaatg gttgggtttt aattcttgtc cgaaaatgaa
     7261 ataacttaaa gcagcatggg ataacggtgg catttttttt ttaaccatat gttggttctt
     7321 tggtggaaga agcgaacgta agatttttga taatcagcat aaatcttcag aaatcagatc
     7381 tgtaagagct agaggtgaaa tcctggaggc cttccaggcc ctgcaccaga gggggcgtga
     7441 ggaatcctgc cgctggctgg caagggaggg gtggacggcc ctgtgctccc ggcaggccag
     7501 gcagaagcag ctggagggag tgagtcactt cttgaatatc taatcggggc tggaattagg
     7561 agtggggtgg gttttatttt catttttctt ttaacaagtt cccaccctat cctaatcctc
     7621 agaaattctc tggcctaagc tataaaatag gctgactttt agaatcattg aaacttggag
     7681 atttctgtgt gttcaaatca ggaacacatc taaaaactaa aaaaaaaaaa aaaaaaaaaa
     7741 aataaggcag ggggaaggct gctcccggct cccagctgcc atttccccag agtatttgga
     7801 ggcacgcctg tgaataacgc tgggaaactc acaacatcga gatgatcgcg gaaaggactc
     7861 agacagggcg gctgttggac acctttcttt cctgactcag gaagtagagt ttcccttctg
     7921 agtagctcgc tgcatggtgt gttccagtca gggtccagcc cagatctgca gtttggaaac
     7981 agatgggcca gctgtgtgga gcgcagtctc tggactcccg gggatttgtt gcttgtctct
     8041 catttcattt taaaacagaa agctcttctt tagcattcac cttaaagtca aggtaccgcc
     8101 gcatgccatg tcccactagg ataagagaac aagttaccgt ggcgtcttga cagcttggga
     8161 agctcacact cgatgtcctt ctacattggg aagttgcttg tgctgggcag tgcaaattag
     8221 acttgaatta cttcttaaaa ggctgatgtg tccagcctcc tcattgtccg agctgctgca
     8281 gacaagatca cttggaacaa cttcctttgg cctcaggcca cctagaattg gtctctggtt
     8341 atttgtaaac aaacagtaga actcgcttcc ctttccagat aggctcggga atagatataa
     8401 ttagacagct ttgccctata ttgacagata cgaagagttg ggaatttgta tatactgaaa
     8461 tctactgaca tttatccggg gtggggtaca gggagaaagg gggttacagt agggtagggg
     8521 agggggtgta gtgtttacca caggtacgaa gtagccactt taacactgag acctctgcct
     8581 cattgaattc aggtttttta agtacttgaa actcctcaga ttctccttat tttacagtta
     8641 ctttaagatt tatgaagtag aaagcattgt tttgtatact gttttgtctc ttaccctctt
     8701 gaacttggat taaaggcaaa gttctgcaga cggaagtgtc cacagtagtt ctctcagatt
     8761 cagtgcacac attcggggaa gagactcctg catgaaatac cagcagcatt tatacgagta
     8821 cttcatatgt atgttctctg ttttgttatt ttgtcaacct tatccccaag cacctcttct
     8881 ttccttttaa tatatgcctg cgtagggaaa aaaacaaaaa tttgcactta tgttactctc
     8941 ctgaaatgct gggtgtaacc tgtgtgtttc aaacccattt ccgttctttt cagtccattg
     9001 cttaagtgac aagttcaggt tcgtgtggca catatgtacg aaggaggaag agaattacct
     9061 gtcctttggt ggcgtcccag agtcattaac gtttaagaaa aagggaaaag atgaatagtt
     9121 accaaagtca tttattcagt ccttcgtttt cttatgtgac atcactgcac ctgctagttg
     9181 gcaagaaagc accctcgggt ttcccttccc cacctgccac agacttatgt gtgtgaatgc
     9241 ctctcggtat ccatcagatg acctaataaa tgagggattc atacagtatt cttgtcagtt
     9301 tagaagtgga ctggataaaa tttactttta ctttgttgtc actaatattg ctctttatct
     9361 catttgtgct gtcacatgcc ctgtgtttaa aaaaaaaaaa aaaaagaaaa tcatgttgcc
     9421 actgataacc aagatgctaa ttgatgacta caactggttc tttttatata caagggtgtg
     9481 tgcataattg gaattgatag gagaaattca tttgtatcca cttgtgatat tgcacaacaa
     9541 aacacagata cctacagatt ctgctctcat ttcctcgtga tctttatgat aattaccttt
     9601 gtagattggt tatttctgta ctttatctgt aataaacttt gtagatcctg tgaactgtta
     9661 ttttttgcct aaatcccttg agacttgagt ctttaataac aaagcatcaa tattcactaa
     9721 gtcaatctct ttcgagtttc tgtgacttgg ctagaagctc ttgacactca agattagtgt
     9781 tcattttccc tgggggtatt ccactagggc attactgtat aatgacttga tgttgccaca
     9841 tagacttcaa gatacatgat atttggggga ttctgttgat tggcctatgt tttattgcat
     9901 agtgtgagac gtgtaaagct tggttaacct gtatatagat agcttattgt tgactagtta
     9961 cggtgtagta gcattgcctg taatatttaa gcttcttact actgtgtgtg ctggtaggaa
    10021 catataattt ttgtacatta tatttactga gatgctgcct ttcttatttt acaaatactt
    10081 tggaattcaa atgtgttttt tgcttccgtg aggattaatt tggaaaggtt tttaatgaca
    10141 ttccactgat ttcagatttt gcttgaggtt gacttcaata aattgtcccg tatgttgcaa
    10201 a
//
LOCUS       XM_032618273           10071 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X4, mRNA.
ACCESSION   XM_032618273
VERSION     XM_032618273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10071
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10071
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746681"
     CDS             153..4436
                     /gene="NSD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD3 isoform
                     X2"
                     /protein_id="XP_032474164.1"
                     /db_xref="GeneID:116746681"
                     /translation="MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNNSDIVEDG
                     GQTPYEATLQQGFQYPPTTEDLPPLTNGYPSSISMYETQTKYQSYNQYPNGSANGFGA
                     VRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPPPSVPQTVIPKKTGSPEIKLKITKT
                     IQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPR
                     LEPEEQNRPNERVDTVSEKPREDPVLKEELPVQPMLPSVPTTEVSAGVKFQVGDLVWS
                     KVGTYPWWPCMVSSDPQLEVHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHK
                     QYEELLAEATRQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF
                     IYIDKQPEEALSQAKKNVASKAEVKKTRRPRSVLNTQPEQTSAGEAASSLSGTEIRRH
                     SQRRHTSVEEDEPPPVKVAWKTAAARKSLPASITMHKGSLDLQKCNMSPVVKIEQVFA
                     LQNATGDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISTPNQRNEKATQNMSSPETAS
                     GPAGSVEKKQQRRSIRTRSESEKSTEVVPKKKIKKEQVETVPQATVKTGLQKGASEIS
                     DSCKPLKKRSRASTDVEMASSTYRDTSDSDSRGLSDLQVGFGKQVDSPSATADADASD
                     VQSVDSSLSRRGTGMSRKDTVCQICESSGDSLIPCEGECCKHFHLECLGLTSFPDGKF
                     ICVECKTGEHPCFSCKVSGTDVKRCSVGACGKFYHEACVRKFPTAIFESKGFRCPQHC
                     CSACCMEKDIHKASKGRMMRCLRCPVAYHSGDACIAAGSIFLSSYVLICSNHSKRSSN
                     SSSAVNVGFCFVCARGLIVQDHSDPMFSSYAYKSHYLLNESNRAELMKLPMIPSSSAS
                     KKKCEKGGRLLCCESCPASFHPECLSIEMPEGCWNCNDCKAGKKLHYKQIVWVKLGNY
                     RWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEG
                     QTSINKTFKKALEEAAKRFQELKAQRESKEALEIEKNSRKPPPYKHIKANKVIGKVQI
                     QVADLSEIPRCNCKPADENPCGLESECLNRMLQYECHPQVCPAGERCQNQCFTKRLYP
                     DAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENSDRIIDAGP
                     KGNYSRFMNHSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNYNLDCLGNGRTE
                     CHCGAENCSGFLGVRPKSACASTTEEKAKNAKLKQKRRKIKTEPKQLHEDHCFQCGDS
                     GELVMCDRKDCPKAYHLLCLNLPQPPYGKWECPWHQCDECSGAAVSFCEFCPRSFCKD
                     HEKGALVPSALEGRLCCSEHDPVSPVSPEYWSKIKCKLESQDHGEEVKE"
     misc_feature    954..1343
                     /gene="NSD3"
                     /note="first PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt1; cd20163"
                     /db_xref="CDD:438991"
     misc_feature    order(993..995,1002..1004,1086..1088)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438991"
     misc_feature    996..1007
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438991"
     misc_feature    order(1197..1205,1212..1217)
                     /gene="NSD3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438991"
     misc_feature    <1956..2390
                     /gene="NSD3"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; Region: TNG2;
                     COG5034"
                     /db_xref="CDD:227367"
     misc_feature    2259..2390
                     /gene="NSD3"
                     /note="PHD finger 1 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD1_NSD3; cd15649"
                     /db_xref="CDD:277119"
     misc_feature    order(2259..2261,2289..2303,2316..2318,2370..2372)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277119"
     misc_feature    2403..2543
                     /gene="NSD3"
                     /note="PHD finger 2 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD2_NSD3; cd15652"
                     /db_xref="CDD:277122"
     misc_feature    order(2403..2405,2433..2447,2463..2465,2526..2528)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277122"
     misc_feature    2544..2693
                     /gene="NSD3"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    order(2544..2546,2598..2609,2619..2621,2685..2687)
                     /gene="NSD3"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276966"
     misc_feature    2904..3011
                     /gene="NSD3"
                     /note="PHD finger 4 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD4_NSD3; cd15658"
                     /db_xref="CDD:277128"
     misc_feature    order(2919..2933,2943..2945,2994..2996)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277128"
     misc_feature    3030..3314
                     /gene="NSD3"
                     /note="second PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt2; cd20166"
                     /db_xref="CDD:438994"
     misc_feature    order(3066..3068,3075..3077,3159..3161)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438994"
     misc_feature    3069..3080
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438994"
     misc_feature    3465..3581
                     /gene="NSD3"
                     /note="AWS domain; Region: AWS; pfam17907"
                     /db_xref="CDD:465559"
     misc_feature    3585..3977
                     /gene="NSD3"
                     /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
                     domain superfamily; Region: SET; cl40432"
                     /db_xref="CDD:394802"
     misc_feature    order(3621..3626,3777..3794,3816..3824,3897..3908)
                     /gene="NSD3"
                     /note="active site"
                     /db_xref="CDD:380914"
     misc_feature    order(3621..3626,3780..3794,3903..3905)
                     /gene="NSD3"
                     /note="SAM binding site [polypeptide binding]; other site"
                     /db_xref="CDD:380914"
     misc_feature    4089..4217
                     /gene="NSD3"
                     /note="PHD finger 5 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD5_NSD3; cd15661"
                     /db_xref="CDD:277131"
     misc_feature    order(4089..4091,4116..4130,4146..4148,4200..4202)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277131"
     misc_feature    4212..4361
                     /gene="NSD3"
                     /note="NSD Cys-His rich domain; Region: C5HCH; pfam17982"
                     /db_xref="CDD:465605"
ORIGIN      
        1 ctcccgcggc cccggcggct gcctgcaccc tagccctact ccgggcctcc gtgtgtctcc
       61 tgtgatcgta ctgacacggc cggggggtta gaatggaaca aagtgaaggc ccgatgagag
      121 aaagggaaag ttaaggatgc tggagcagaa caatggattt ctctttctct ttcatgcaag
      181 ggatcatggg aaacacaatt cagcaaccac ctcaactcat tgactccgcc aacatccgtc
      241 aggaggatgc ctttgataac aacagtgaca ttgttgaaga tggtggccag acaccatacg
      301 aagctacctt gcagcaaggc tttcagtacc cacctacaac agaagatctt cctccactca
      361 cgaatggcta cccatcatca atcagcatgt acgaaactca aaccaaatac cagtcctata
      421 accagtatcc caatgggtcg gccaatggct ttggtgcagt tagaaacttt agccccactg
      481 actattacca ttcagaaatt ccaaacacaa gaccacatga aattctggaa aaaccttctc
      541 ctccacagcc accacctcct ccttcagtac cacagactgt gattccaaag aagactggct
      601 cacctgaaat taaactaaaa ataaccaaaa ctatccagaa tggcagggaa ttgtttgagt
      661 cttccctttg tggagacctt ttaaatgaag tacaggcaag tgagcacaca aagtcaaagc
      721 atgaaagcag aaaagaaaag aggaaaaaaa gcaacaagca cgattcatct agatctgaag
      781 agcgcaagtc acacaaaatc cccagattag aaccagagga acaaaataga ccaaatgaga
      841 gggttgacac tgtatcagaa aaaccaagag aagatccagt actgaaagag gagctcccgg
      901 ttcagccgat gttaccttct gttccaacaa cagaagtgtc tgctggtgtt aagttccagg
      961 ttggcgatct tgtttggtct aaggtgggaa cctatccttg gtggccttgt atggtttcaa
     1021 gtgatcccca actcgaggtt cacaccaaaa ttaacacaag aggtgcccgg gaatatcacg
     1081 tccaattttt tagcaaccag ccagagaggg cgtgggttca cgaaaagcgg gtccgagagt
     1141 acaaaggtca caaacagtat gaagaactac tggccgaggc gaccagacaa gccagcaatc
     1201 actctgagaa acagaagatt cggaaacccc ggcctcagag agaacgtgct cagtgggata
     1261 tcggcattgc ccacgcagag aaagcattga aaatgacccg ggaggaaaga attgaacagt
     1321 atacttttat ctacattgat aaacagcctg aggaggcttt atcccaagca aaaaagaatg
     1381 ttgcctccaa ggctgaagtt aaaaaaaccc gaaggccaag atcagtgctg aatactcagc
     1441 cagaacagac cagtgcaggc gaggcggcct cctcactatc aggtactgaa attcggagac
     1501 acagccagag gcggcacact agcgtggaag aggacgaacc acctcccgtt aaagtagcct
     1561 ggaaaacggc agctgcgagg aaatccttac cagcttccat cacaatgcac aaagggagcc
     1621 tggatttgca gaagtgtaac atgtctccag ttgtgaaaat tgaacaagtg tttgctcttc
     1681 agaatgctac aggagatggg aaatttatcg atcagtttgt ttattcaacg aagggaattg
     1741 gtaacaaaac agaaataagt gtcaggggac aagacagact tataatttct acaccaaacc
     1801 agaggaatga aaaggcaact cagaatatgt catctcctga aacagcatct ggtcctgcag
     1861 gctcagtaga aaagaagcaa cagagaagat ccattagaac ccgttccgaa tcagagaaat
     1921 ccactgaggt cgtgccaaag aagaagatca aaaaggagca ggttgaaaca gttcctcagg
     1981 ctacagtgaa gactggatta caaaaaggtg ccagcgagat ttcagattcc tgtaaacctc
     2041 taaagaaaag gagccgcgcc tcaactgatg tagaaatggc tagttccacg tacagagaca
     2101 cgtctgactc cgattccaga ggactgagtg acctgcaggt aggctttgga aagcaagtcg
     2161 atagcccttc agctactgca gacgcagatg cttctgacgt gcagtccgtg gattcaagtt
     2221 tgtcaagaag aggcactgga atgagtagga aggacactgt atgtcagatc tgtgaaagct
     2281 ctggggattc tctgattcct tgcgagggag agtgctgcaa acacttccac ctggagtgcc
     2341 tgggattgac atcattccct gatggaaagt tcatctgcgt cgaatgtaaa actggagagc
     2401 acccgtgttt ttcatgtaaa gtgtctggta cagacgtgaa gcgttgctct gttggtgctt
     2461 gtgggaaatt ttaccatgaa gcctgtgtcc gcaaattccc cactgccatc tttgaatcaa
     2521 aaggattccg ctgtccccag cactgctgct ctgcctgctg tatggagaaa gatatccaca
     2581 aagcaagtaa aggtcgcatg atgagatgtt tgaggtgccc agtagcctac cactctggag
     2641 atgcttgcat tgctgccggc agcatatttc tgtcttccta cgttctcatc tgtagtaatc
     2701 attccaaacg gagcagtaac tcttcctctg ctgtaaatgt aggcttttgt ttcgtttgtg
     2761 caagagggct gatagtgcag gaccattcag accccatgtt cagttcctat gcctataagt
     2821 cccactacct actgaacgaa tcaaatcgtg cagagttgat gaaattacct atgattcctt
     2881 cttcgtcagc ttccaaaaag aaatgtgaga aaggtggaag attgctctgc tgtgagtcgt
     2941 gcccggcttc cttccacccg gagtgcctga gcatagagat gccagaaggc tgctggaatt
     3001 gcaatgactg taaagctggc aagaaactac attacaagca gattgtttgg gtcaaattgg
     3061 gaaattacag gtggtggccg gcggagatct gcaacccccg gtctgtgcca ctcaacatcc
     3121 agggcctcaa gcatgacctg ggggacttcc ccgtgttctt cttcggttct cacgactact
     3181 actgggtaca ccagggcaga gtgttccctt acgtcgaagg agacaaaagc tttgctgagg
     3241 gacagactag tattaacaag accttcaaaa aagcgttgga agaagctgca aaacgtttcc
     3301 aggaattgaa agcgcaaaga gaaagtaaag aagcactaga gattgaaaaa aactcaagaa
     3361 aaccccctcc ttacaaacac atcaaagcta acaaagtgat aggaaaggta cagatccagg
     3421 ttgcagacct gtcagagatt ccccgctgta actgcaagcc ggctgacgag aacccgtgtg
     3481 gcttggagtc cgagtgcctg aacagaatgc tgcagtatga gtgtcacccg caggtgtgcc
     3541 cggcagggga gcgctgccag aaccagtgct tcaccaagag gctctacccg gacgcagaaa
     3601 tcatcaagac agagcggaga ggctggggcc tcaggaccaa aaggagcatc aagaagggtg
     3661 aatttgtaaa tgaatatgtt ggcgaattaa ttgatgagga agaatgcaga ttgcgaatca
     3721 agcgagccca cgagaacagt gaccgtatca ttgacgctgg cccgaaggga aattattctc
     3781 gctttatgaa ccacagttgt aatccaaact gtgaaacaca aaagtggacg gtgaatggag
     3841 atgttcgagt tggccttttt gctctttgtg acattcctgc agggatggag ctaacattta
     3901 attacaacct ggactgtctg ggcaatggca ggacggagtg ccactgcggg gcagagaact
     3961 gcagtggttt cctcggcgtg cggccaaagt cggcatgtgc gtccacaact gaagaaaagg
     4021 caaaaaacgc taagctgaag cagaagagac gaaaaatcaa aacagagccg aagcagctgc
     4081 atgaagatca ctgcttccag tgcggggaca gcggcgagct ggtcatgtgc gacaggaagg
     4141 attgccccaa agcctaccac ctgctctgcc tcaacctgcc ccagccgccc tacggaaagt
     4201 gggagtgccc gtggcatcag tgcgatgagt gcagcggcgc agctgtgtcc ttctgtgagt
     4261 tctgtccacg ttcgttttgc aaagatcatg aaaagggggc tctggtgccc tccgccctgg
     4321 aaggccgtct ctgctgctct gaacatgacc ctgtatctcc cgtgtcaccc gaatactgga
     4381 gcaagatcaa atgtaaattg gaatcacagg atcatggaga agaagtcaaa gaataaatgg
     4441 gcagtgattt ccttcttttt ttattgaaac gaagaaagga aaagaaaaaa gagaatgagt
     4501 tagtacaaga agagaccgct gcagtgcata cagccttggc catcagcgct gccctattaa
     4561 agtgaagatg gggaaccagg ccgtgcaggc agaagccgtt ggtgggatct ggtttttcag
     4621 tttcgtcctg tcagcttggg gattcttttg tggagggtta ggttcccttg gtcttttctt
     4681 gccttttatt gtgcttcaat gcctttgcag ctggcaaaag agatgtcttc gcttttaaaa
     4741 taagaacaaa gagaagtagt tctgttaatg agataaattt aaagtctagg atgtgttcct
     4801 tgggtgtaaa aagcaaaagt agccatcatt cctttattta ttttcatttt taaaaatttt
     4861 gagaagtgta gttcagatag tctaatctgt gtgtgtgtgt gtctttgtgt gtgtgtgtgt
     4921 gtgtgtgtgt gttttaagta ggaattgcag aaagccctct agaaaagggt atggtggtct
     4981 tacctctttc ctgagcagta gggaggctgg cttcgctttc ccttccagac gcctctcgta
     5041 gtcttagaga agggctctgt gggagtattg aatctggcct cttgaaatca aaaggcctca
     5101 gtgaatatta cctctgtggt cttaaactag gtgggctttc cgatataact ttacctagaa
     5161 aggtatataa tgtggttgtt ggttttttgt tctggagaaa aaaagaaatg gatgccctca
     5221 ctgagtctga agcgttctcc actgataatg ggtgtttttg atgaagtgcg tctctgtgga
     5281 tatgaataca gagttagaat ggtcattcct gttgtcttga cacactggta aaggcagcta
     5341 aagggagttg aaaggcacag accaaaagtt gggtcaaata agcaccattt tctatccaat
     5401 ttaatgtaca ccctggtctg acttggagag aattacgggc attttaattt tctgtctctg
     5461 ctttcctctc ccaagcaaac attccctttg tcagctgacc actcagtcac gtgtcctggt
     5521 gaaagctaca cggatgaatt tgaactgtat ttggatagat cttcttgttc agttccgaat
     5581 ttgggggtga aagtggtagc acttgcactt ctacagggta aaggagagcc acagaaacac
     5641 acttcacggc aggaagcact tagggagagc tccacagaaa gcagtgatag caggaatggt
     5701 tggagctcag agacgcaagt gaaccggaat atctgcccac agaactcact ggctttgaat
     5761 gcctaggaat atgtatattc caggattccc ttatgaatga attagtcccg tcagacattg
     5821 ttgtaacact gcactaagta gaagcctagg tttagcttga atgaacgtca gcttctctgt
     5881 gaattttgac tgctaacaat tgccggtacc tggtagcatt tattttccct caggaagtac
     5941 ccagtgacct tataaaggca gggaagatag atgctccaca gcattccttc agttgtgctg
     6001 tgtgttcctt ttccttatca atttacaact cttctctgga aaaaagaaga aaaaaatctg
     6061 ttttgtgctt cttttttatt ttctttgtat gtaaatgtgc aattatactg gattttttct
     6121 tgttaaaaaa aaaaaaaaag acaaacaaaa aacactacaa ttcctttact taagctccta
     6181 aactgccact tgcctgattc cagcaagtaa ttctgaggta acttattggg cctccagtaa
     6241 ttctgttgat tagatatggt cccaaaagaa agagcaagat agaaaatgct atatgtgtta
     6301 ccaaatgcga ctgctacaag tcacatgaat tacagctcac caaaacacta aagtttgctc
     6361 ttgagcaatc atatagtttg atgtcctttt aaaaaataat ttaagaaaat ctaggtttta
     6421 tcatactaaa actttatttt atatatgtat atgataaatg tttgcttttt taaacttact
     6481 aacatgaagg atttccttta atatctgaaa tgcacctcgt gttgaaacgg tatccaacat
     6541 ggaatcttat ctccttgctt tgttttggac ttagtgctat ttaatatctg gtgactttta
     6601 tatggtaagc cagggtatat cctgtatact acaaatacct taggtttaag tatttttatg
     6661 cagcttcttc attgtgtcac attttgtttg tgtatctgta gcagagctcc gctggggggt
     6721 gctacagcgg agggggggtg gggggttggc taatagggtt gttctgccat ttcagaaatc
     6781 agggcggaaa acaccatcgc tgaccgcagc catgggtctt ggtccgcgag tgtcctttaa
     6841 cggtctggaa cgtggcttta gtcctggcag tgccagggag ctctcctcac acctcgtact
     6901 gttgcctagt ttgtatattt taaaggtgca ggctatggaa gcagaaaaag aataagttgt
     6961 gctttatatg tgcatagtat ccatgcaggg tgcttgtctg tgcttcacca atgaaatttt
     7021 gcaaaagaca tgttgctcac tgatagctag aagttgttat ttgttaactt ttaaatctgt
     7081 ctgtggtcag agcataaatg gttgggtttt aattcttgtc cgaaaatgaa ataacttaaa
     7141 gcagcatggg ataacggtgg catttttttt ttaaccatat gttggttctt tggtggaaga
     7201 agcgaacgta agatttttga taatcagcat aaatcttcag aaatcagatc tgtaagagct
     7261 agaggtgaaa tcctggaggc cttccaggcc ctgcaccaga gggggcgtga ggaatcctgc
     7321 cgctggctgg caagggaggg gtggacggcc ctgtgctccc ggcaggccag gcagaagcag
     7381 ctggagggag tgagtcactt cttgaatatc taatcggggc tggaattagg agtggggtgg
     7441 gttttatttt catttttctt ttaacaagtt cccaccctat cctaatcctc agaaattctc
     7501 tggcctaagc tataaaatag gctgactttt agaatcattg aaacttggag atttctgtgt
     7561 gttcaaatca ggaacacatc taaaaactaa aaaaaaaaaa aaaaaaaaaa aataaggcag
     7621 ggggaaggct gctcccggct cccagctgcc atttccccag agtatttgga ggcacgcctg
     7681 tgaataacgc tgggaaactc acaacatcga gatgatcgcg gaaaggactc agacagggcg
     7741 gctgttggac acctttcttt cctgactcag gaagtagagt ttcccttctg agtagctcgc
     7801 tgcatggtgt gttccagtca gggtccagcc cagatctgca gtttggaaac agatgggcca
     7861 gctgtgtgga gcgcagtctc tggactcccg gggatttgtt gcttgtctct catttcattt
     7921 taaaacagaa agctcttctt tagcattcac cttaaagtca aggtaccgcc gcatgccatg
     7981 tcccactagg ataagagaac aagttaccgt ggcgtcttga cagcttggga agctcacact
     8041 cgatgtcctt ctacattggg aagttgcttg tgctgggcag tgcaaattag acttgaatta
     8101 cttcttaaaa ggctgatgtg tccagcctcc tcattgtccg agctgctgca gacaagatca
     8161 cttggaacaa cttcctttgg cctcaggcca cctagaattg gtctctggtt atttgtaaac
     8221 aaacagtaga actcgcttcc ctttccagat aggctcggga atagatataa ttagacagct
     8281 ttgccctata ttgacagata cgaagagttg ggaatttgta tatactgaaa tctactgaca
     8341 tttatccggg gtggggtaca gggagaaagg gggttacagt agggtagggg agggggtgta
     8401 gtgtttacca caggtacgaa gtagccactt taacactgag acctctgcct cattgaattc
     8461 aggtttttta agtacttgaa actcctcaga ttctccttat tttacagtta ctttaagatt
     8521 tatgaagtag aaagcattgt tttgtatact gttttgtctc ttaccctctt gaacttggat
     8581 taaaggcaaa gttctgcaga cggaagtgtc cacagtagtt ctctcagatt cagtgcacac
     8641 attcggggaa gagactcctg catgaaatac cagcagcatt tatacgagta cttcatatgt
     8701 atgttctctg ttttgttatt ttgtcaacct tatccccaag cacctcttct ttccttttaa
     8761 tatatgcctg cgtagggaaa aaaacaaaaa tttgcactta tgttactctc ctgaaatgct
     8821 gggtgtaacc tgtgtgtttc aaacccattt ccgttctttt cagtccattg cttaagtgac
     8881 aagttcaggt tcgtgtggca catatgtacg aaggaggaag agaattacct gtcctttggt
     8941 ggcgtcccag agtcattaac gtttaagaaa aagggaaaag atgaatagtt accaaagtca
     9001 tttattcagt ccttcgtttt cttatgtgac atcactgcac ctgctagttg gcaagaaagc
     9061 accctcgggt ttcccttccc cacctgccac agacttatgt gtgtgaatgc ctctcggtat
     9121 ccatcagatg acctaataaa tgagggattc atacagtatt cttgtcagtt tagaagtgga
     9181 ctggataaaa tttactttta ctttgttgtc actaatattg ctctttatct catttgtgct
     9241 gtcacatgcc ctgtgtttaa aaaaaaaaaa aaaaagaaaa tcatgttgcc actgataacc
     9301 aagatgctaa ttgatgacta caactggttc tttttatata caagggtgtg tgcataattg
     9361 gaattgatag gagaaattca tttgtatcca cttgtgatat tgcacaacaa aacacagata
     9421 cctacagatt ctgctctcat ttcctcgtga tctttatgat aattaccttt gtagattggt
     9481 tatttctgta ctttatctgt aataaacttt gtagatcctg tgaactgtta ttttttgcct
     9541 aaatcccttg agacttgagt ctttaataac aaagcatcaa tattcactaa gtcaatctct
     9601 ttcgagtttc tgtgacttgg ctagaagctc ttgacactca agattagtgt tcattttccc
     9661 tgggggtatt ccactagggc attactgtat aatgacttga tgttgccaca tagacttcaa
     9721 gatacatgat atttggggga ttctgttgat tggcctatgt tttattgcat agtgtgagac
     9781 gtgtaaagct tggttaacct gtatatagat agcttattgt tgactagtta cggtgtagta
     9841 gcattgcctg taatatttaa gcttcttact actgtgtgtg ctggtaggaa catataattt
     9901 ttgtacatta tatttactga gatgctgcct ttcttatttt acaaatactt tggaattcaa
     9961 atgtgttttt tgcttccgtg aggattaatt tggaaaggtt tttaatgaca ttccactgat
    10021 ttcagatttt gcttgaggtt gacttcaata aattgtcccg tatgttgcaa a
//
LOCUS       XM_032618274           10032 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X5, mRNA.
ACCESSION   XM_032618274
VERSION     XM_032618274.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10032
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10032
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746681"
     CDS             153..4397
                     /gene="NSD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD3 isoform
                     X3"
                     /protein_id="XP_032474165.1"
                     /db_xref="GeneID:116746681"
                     /translation="MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNNSDIVEDG
                     GQTPYEATLQQGFQYPPTTEDLPPLTNGYPSSISMYETQTKYQSYNQYPNGSANGFGA
                     VRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPPPSVPQTVIPKKTGSPEIKLKITKT
                     IQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPR
                     LEPEEQNVQPMLPSVPTTEVSAGVKFQVGDLVWSKVGTYPWWPCMVSSDPQLEVHTKI
                     NTRGAREYHVQFFSNQPERAWVHEKRVREYKGHKQYEELLAEATRQASNHSEKQKIRK
                     PRPQRERAQWDIGIAHAEKALKMTREERIEQYTFIYIDKQPEEALSQAKKNVASKAEV
                     KKTRRPRSVLNTQPEQTSAGEAASSLSGTEIRRHSQRRHTSVEEDEPPPVKVAWKTAA
                     ARKSLPASITMHKGSLDLQKCNMSPVVKIEQVFALQNATGDGKFIDQFVYSTKGIGNK
                     TEISVRGQDRLIISTPNQRNEKATQNMSSPETASGPAGSVEKKQQRRSIRTRSESEKS
                     TEVVPKKKIKKEQVETVPQATVKTGLQKGASEISDSCKPLKKRSRASTDVEMASSTYR
                     DTSDSDSRGLSDLQVGFGKQVDSPSATADADASDVQSVDSSLSRRGTGMSRKDTVCQI
                     CESSGDSLIPCEGECCKHFHLECLGLTSFPDGKFICVECKTGEHPCFSCKVSGTDVKR
                     CSVGACGKFYHEACVRKFPTAIFESKGFRCPQHCCSACCMEKDIHKASKGRMMRCLRC
                     PVAYHSGDACIAAGSIFLSSYVLICSNHSKRSSNSSSAVNVGFCFVCARGLIVQDHSD
                     PMFSSYAYKSHYLLNESNRAELMKLPMIPSSSASKKKCEKGGRLLCCESCPASFHPEC
                     LSIEMPEGCWNCNDCKAGKKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDL
                     GDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEGQTSINKTFKKALEEAAKRFQELKA
                     QRESKEALEIEKNSRKPPPYKHIKANKVIGKVQIQVADLSEIPRCNCKPADENPCGLE
                     SECLNRMLQYECHPQVCPAGERCQNQCFTKRLYPDAEIIKTERRGWGLRTKRSIKKGE
                     FVNEYVGELIDEEECRLRIKRAHENSVTNFYMLTVTKDRIIDAGPKGNYSRFMNHSCN
                     PNCETQKWTVNGDVRVGLFALCDIPAGMELTFNYNLDCLGNGRTECHCGAENCSGFLG
                     VRPKSACASTTEEKAKNAKLKQKRRKIKTEPKQLHEDHCFQCGDSGELVMCDRKDCPK
                     AYHLLCLNLPQPPYGKWECPWHQCDECSGAAVSFCEFCPRSFCKDHEKGALVPSALEG
                     RLCCSEHDPVSPVSPEYWSKIKCKLESQDHGEEVKE"
     misc_feature    882..1271
                     /gene="NSD3"
                     /note="first PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt1; cd20163"
                     /db_xref="CDD:438991"
     misc_feature    order(921..923,930..932,1014..1016)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438991"
     misc_feature    924..935
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438991"
     misc_feature    order(1125..1133,1140..1145)
                     /gene="NSD3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438991"
     misc_feature    <1884..2318
                     /gene="NSD3"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; Region: TNG2;
                     COG5034"
                     /db_xref="CDD:227367"
     misc_feature    2187..2318
                     /gene="NSD3"
                     /note="PHD finger 1 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD1_NSD3; cd15649"
                     /db_xref="CDD:277119"
     misc_feature    order(2187..2189,2217..2231,2244..2246,2298..2300)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277119"
     misc_feature    2331..2471
                     /gene="NSD3"
                     /note="PHD finger 2 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD2_NSD3; cd15652"
                     /db_xref="CDD:277122"
     misc_feature    order(2331..2333,2361..2375,2391..2393,2454..2456)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277122"
     misc_feature    2472..2621
                     /gene="NSD3"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    order(2472..2474,2526..2537,2547..2549,2613..2615)
                     /gene="NSD3"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276966"
     misc_feature    2832..2939
                     /gene="NSD3"
                     /note="PHD finger 4 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD4_NSD3; cd15658"
                     /db_xref="CDD:277128"
     misc_feature    order(2847..2861,2871..2873,2922..2924)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277128"
     misc_feature    2958..3242
                     /gene="NSD3"
                     /note="second PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt2; cd20166"
                     /db_xref="CDD:438994"
     misc_feature    order(2994..2996,3003..3005,3087..3089)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438994"
     misc_feature    2997..3008
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438994"
     misc_feature    3393..3509
                     /gene="NSD3"
                     /note="AWS domain; Region: AWS; pfam17907"
                     /db_xref="CDD:465559"
     misc_feature    3513..3938
                     /gene="NSD3"
                     /note="SET domain (including post-SET domain) found in
                     nuclear receptor-binding SET domain-containing protein 3
                     (NSD3) and similar proteins; Region: SET_NSD3; cd19212"
                     /db_xref="CDD:380989"
     misc_feature    order(3546..3554,3603..3605,3633..3635,3645..3647,
                     3672..3692,3741..3755,3774..3782,3825..3827,3858..3890,
                     3894..3908,3933..3935)
                     /gene="NSD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380989"
     misc_feature    order(3546..3554,3672..3683,3741..3755,3864..3866,
                     3885..3887,3897..3908,3933..3935)
                     /gene="NSD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3603..3605,3633..3635,3645..3647,3678..3692,
                     3774..3782,3825..3827,3858..3872)
                     /gene="NSD3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3759..3761,3900..3902,3906..3908,3921..3923)
                     /gene="NSD3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    4050..4178
                     /gene="NSD3"
                     /note="PHD finger 5 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD5_NSD3; cd15661"
                     /db_xref="CDD:277131"
     misc_feature    order(4050..4052,4077..4091,4107..4109,4161..4163)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277131"
     misc_feature    4173..4322
                     /gene="NSD3"
                     /note="NSD Cys-His rich domain; Region: C5HCH; pfam17982"
                     /db_xref="CDD:465605"
ORIGIN      
        1 ctcccgcggc cccggcggct gcctgcaccc tagccctact ccgggcctcc gtgtgtctcc
       61 tgtgatcgta ctgacacggc cggggggtta gaatggaaca aagtgaaggc ccgatgagag
      121 aaagggaaag ttaaggatgc tggagcagaa caatggattt ctctttctct ttcatgcaag
      181 ggatcatggg aaacacaatt cagcaaccac ctcaactcat tgactccgcc aacatccgtc
      241 aggaggatgc ctttgataac aacagtgaca ttgttgaaga tggtggccag acaccatacg
      301 aagctacctt gcagcaaggc tttcagtacc cacctacaac agaagatctt cctccactca
      361 cgaatggcta cccatcatca atcagcatgt acgaaactca aaccaaatac cagtcctata
      421 accagtatcc caatgggtcg gccaatggct ttggtgcagt tagaaacttt agccccactg
      481 actattacca ttcagaaatt ccaaacacaa gaccacatga aattctggaa aaaccttctc
      541 ctccacagcc accacctcct ccttcagtac cacagactgt gattccaaag aagactggct
      601 cacctgaaat taaactaaaa ataaccaaaa ctatccagaa tggcagggaa ttgtttgagt
      661 cttccctttg tggagacctt ttaaatgaag tacaggcaag tgagcacaca aagtcaaagc
      721 atgaaagcag aaaagaaaag aggaaaaaaa gcaacaagca cgattcatct agatctgaag
      781 agcgcaagtc acacaaaatc cccagattag aaccagagga acaaaatgtt cagccgatgt
      841 taccttctgt tccaacaaca gaagtgtctg ctggtgttaa gttccaggtt ggcgatcttg
      901 tttggtctaa ggtgggaacc tatccttggt ggccttgtat ggtttcaagt gatccccaac
      961 tcgaggttca caccaaaatt aacacaagag gtgcccggga atatcacgtc caatttttta
     1021 gcaaccagcc agagagggcg tgggttcacg aaaagcgggt ccgagagtac aaaggtcaca
     1081 aacagtatga agaactactg gccgaggcga ccagacaagc cagcaatcac tctgagaaac
     1141 agaagattcg gaaaccccgg cctcagagag aacgtgctca gtgggatatc ggcattgccc
     1201 acgcagagaa agcattgaaa atgacccggg aggaaagaat tgaacagtat acttttatct
     1261 acattgataa acagcctgag gaggctttat cccaagcaaa aaagaatgtt gcctccaagg
     1321 ctgaagttaa aaaaacccga aggccaagat cagtgctgaa tactcagcca gaacagacca
     1381 gtgcaggcga ggcggcctcc tcactatcag gtactgaaat tcggagacac agccagaggc
     1441 ggcacactag cgtggaagag gacgaaccac ctcccgttaa agtagcctgg aaaacggcag
     1501 ctgcgaggaa atccttacca gcttccatca caatgcacaa agggagcctg gatttgcaga
     1561 agtgtaacat gtctccagtt gtgaaaattg aacaagtgtt tgctcttcag aatgctacag
     1621 gagatgggaa atttatcgat cagtttgttt attcaacgaa gggaattggt aacaaaacag
     1681 aaataagtgt caggggacaa gacagactta taatttctac accaaaccag aggaatgaaa
     1741 aggcaactca gaatatgtca tctcctgaaa cagcatctgg tcctgcaggc tcagtagaaa
     1801 agaagcaaca gagaagatcc attagaaccc gttccgaatc agagaaatcc actgaggtcg
     1861 tgccaaagaa gaagatcaaa aaggagcagg ttgaaacagt tcctcaggct acagtgaaga
     1921 ctggattaca aaaaggtgcc agcgagattt cagattcctg taaacctcta aagaaaagga
     1981 gccgcgcctc aactgatgta gaaatggcta gttccacgta cagagacacg tctgactccg
     2041 attccagagg actgagtgac ctgcaggtag gctttggaaa gcaagtcgat agcccttcag
     2101 ctactgcaga cgcagatgct tctgacgtgc agtccgtgga ttcaagtttg tcaagaagag
     2161 gcactggaat gagtaggaag gacactgtat gtcagatctg tgaaagctct ggggattctc
     2221 tgattccttg cgagggagag tgctgcaaac acttccacct ggagtgcctg ggattgacat
     2281 cattccctga tggaaagttc atctgcgtcg aatgtaaaac tggagagcac ccgtgttttt
     2341 catgtaaagt gtctggtaca gacgtgaagc gttgctctgt tggtgcttgt gggaaatttt
     2401 accatgaagc ctgtgtccgc aaattcccca ctgccatctt tgaatcaaaa ggattccgct
     2461 gtccccagca ctgctgctct gcctgctgta tggagaaaga tatccacaaa gcaagtaaag
     2521 gtcgcatgat gagatgtttg aggtgcccag tagcctacca ctctggagat gcttgcattg
     2581 ctgccggcag catatttctg tcttcctacg ttctcatctg tagtaatcat tccaaacgga
     2641 gcagtaactc ttcctctgct gtaaatgtag gcttttgttt cgtttgtgca agagggctga
     2701 tagtgcagga ccattcagac cccatgttca gttcctatgc ctataagtcc cactacctac
     2761 tgaacgaatc aaatcgtgca gagttgatga aattacctat gattccttct tcgtcagctt
     2821 ccaaaaagaa atgtgagaaa ggtggaagat tgctctgctg tgagtcgtgc ccggcttcct
     2881 tccacccgga gtgcctgagc atagagatgc cagaaggctg ctggaattgc aatgactgta
     2941 aagctggcaa gaaactacat tacaagcaga ttgtttgggt caaattggga aattacaggt
     3001 ggtggccggc ggagatctgc aacccccggt ctgtgccact caacatccag ggcctcaagc
     3061 atgacctggg ggacttcccc gtgttcttct tcggttctca cgactactac tgggtacacc
     3121 agggcagagt gttcccttac gtcgaaggag acaaaagctt tgctgaggga cagactagta
     3181 ttaacaagac cttcaaaaaa gcgttggaag aagctgcaaa acgtttccag gaattgaaag
     3241 cgcaaagaga aagtaaagaa gcactagaga ttgaaaaaaa ctcaagaaaa ccccctcctt
     3301 acaaacacat caaagctaac aaagtgatag gaaaggtaca gatccaggtt gcagacctgt
     3361 cagagattcc ccgctgtaac tgcaagccgg ctgacgagaa cccgtgtggc ttggagtccg
     3421 agtgcctgaa cagaatgctg cagtatgagt gtcacccgca ggtgtgcccg gcaggggagc
     3481 gctgccagaa ccagtgcttc accaagaggc tctacccgga cgcagaaatc atcaagacag
     3541 agcggagagg ctggggcctc aggaccaaaa ggagcatcaa gaagggtgaa tttgtaaatg
     3601 aatatgttgg cgaattaatt gatgaggaag aatgcagatt gcgaatcaag cgagcccacg
     3661 agaacagtgt aactaatttt tatatgttaa ctgttaccaa ggaccgtatc attgacgctg
     3721 gcccgaaggg aaattattct cgctttatga accacagttg taatccaaac tgtgaaacac
     3781 aaaagtggac ggtgaatgga gatgttcgag ttggcctttt tgctctttgt gacattcctg
     3841 cagggatgga gctaacattt aattacaacc tggactgtct gggcaatggc aggacggagt
     3901 gccactgcgg ggcagagaac tgcagtggtt tcctcggcgt gcggccaaag tcggcatgtg
     3961 cgtccacaac tgaagaaaag gcaaaaaacg ctaagctgaa gcagaagaga cgaaaaatca
     4021 aaacagagcc gaagcagctg catgaagatc actgcttcca gtgcggggac agcggcgagc
     4081 tggtcatgtg cgacaggaag gattgcccca aagcctacca cctgctctgc ctcaacctgc
     4141 cccagccgcc ctacggaaag tgggagtgcc cgtggcatca gtgcgatgag tgcagcggcg
     4201 cagctgtgtc cttctgtgag ttctgtccac gttcgttttg caaagatcat gaaaaggggg
     4261 ctctggtgcc ctccgccctg gaaggccgtc tctgctgctc tgaacatgac cctgtatctc
     4321 ccgtgtcacc cgaatactgg agcaagatca aatgtaaatt ggaatcacag gatcatggag
     4381 aagaagtcaa agaataaatg ggcagtgatt tccttctttt tttattgaaa cgaagaaagg
     4441 aaaagaaaaa agagaatgag ttagtacaag aagagaccgc tgcagtgcat acagccttgg
     4501 ccatcagcgc tgccctatta aagtgaagat ggggaaccag gccgtgcagg cagaagccgt
     4561 tggtgggatc tggtttttca gtttcgtcct gtcagcttgg ggattctttt gtggagggtt
     4621 aggttccctt ggtcttttct tgccttttat tgtgcttcaa tgcctttgca gctggcaaaa
     4681 gagatgtctt cgcttttaaa ataagaacaa agagaagtag ttctgttaat gagataaatt
     4741 taaagtctag gatgtgttcc ttgggtgtaa aaagcaaaag tagccatcat tcctttattt
     4801 attttcattt ttaaaaattt tgagaagtgt agttcagata gtctaatctg tgtgtgtgtg
     4861 tgtctttgtg tgtgtgtgtg tgtgtgtgtg tgttttaagt aggaattgca gaaagccctc
     4921 tagaaaaggg tatggtggtc ttacctcttt cctgagcagt agggaggctg gcttcgcttt
     4981 cccttccaga cgcctctcgt agtcttagag aagggctctg tgggagtatt gaatctggcc
     5041 tcttgaaatc aaaaggcctc agtgaatatt acctctgtgg tcttaaacta ggtgggcttt
     5101 ccgatataac tttacctaga aaggtatata atgtggttgt tggttttttg ttctggagaa
     5161 aaaaagaaat ggatgccctc actgagtctg aagcgttctc cactgataat gggtgttttt
     5221 gatgaagtgc gtctctgtgg atatgaatac agagttagaa tggtcattcc tgttgtcttg
     5281 acacactggt aaaggcagct aaagggagtt gaaaggcaca gaccaaaagt tgggtcaaat
     5341 aagcaccatt ttctatccaa tttaatgtac accctggtct gacttggaga gaattacggg
     5401 cattttaatt ttctgtctct gctttcctct cccaagcaaa cattcccttt gtcagctgac
     5461 cactcagtca cgtgtcctgg tgaaagctac acggatgaat ttgaactgta tttggataga
     5521 tcttcttgtt cagttccgaa tttgggggtg aaagtggtag cacttgcact tctacagggt
     5581 aaaggagagc cacagaaaca cacttcacgg caggaagcac ttagggagag ctccacagaa
     5641 agcagtgata gcaggaatgg ttggagctca gagacgcaag tgaaccggaa tatctgccca
     5701 cagaactcac tggctttgaa tgcctaggaa tatgtatatt ccaggattcc cttatgaatg
     5761 aattagtccc gtcagacatt gttgtaacac tgcactaagt agaagcctag gtttagcttg
     5821 aatgaacgtc agcttctctg tgaattttga ctgctaacaa ttgccggtac ctggtagcat
     5881 ttattttccc tcaggaagta cccagtgacc ttataaaggc agggaagata gatgctccac
     5941 agcattcctt cagttgtgct gtgtgttcct tttccttatc aatttacaac tcttctctgg
     6001 aaaaaagaag aaaaaaatct gttttgtgct tcttttttat tttctttgta tgtaaatgtg
     6061 caattatact ggattttttc ttgttaaaaa aaaaaaaaaa gacaaacaaa aaacactaca
     6121 attcctttac ttaagctcct aaactgccac ttgcctgatt ccagcaagta attctgaggt
     6181 aacttattgg gcctccagta attctgttga ttagatatgg tcccaaaaga aagagcaaga
     6241 tagaaaatgc tatatgtgtt accaaatgcg actgctacaa gtcacatgaa ttacagctca
     6301 ccaaaacact aaagtttgct cttgagcaat catatagttt gatgtccttt taaaaaataa
     6361 tttaagaaaa tctaggtttt atcatactaa aactttattt tatatatgta tatgataaat
     6421 gtttgctttt ttaaacttac taacatgaag gatttccttt aatatctgaa atgcacctcg
     6481 tgttgaaacg gtatccaaca tggaatctta tctccttgct ttgttttgga cttagtgcta
     6541 tttaatatct ggtgactttt atatggtaag ccagggtata tcctgtatac tacaaatacc
     6601 ttaggtttaa gtatttttat gcagcttctt cattgtgtca cattttgttt gtgtatctgt
     6661 agcagagctc cgctgggggg tgctacagcg gagggggggt ggggggttgg ctaatagggt
     6721 tgttctgcca tttcagaaat cagggcggaa aacaccatcg ctgaccgcag ccatgggtct
     6781 tggtccgcga gtgtccttta acggtctgga acgtggcttt agtcctggca gtgccaggga
     6841 gctctcctca cacctcgtac tgttgcctag tttgtatatt ttaaaggtgc aggctatgga
     6901 agcagaaaaa gaataagttg tgctttatat gtgcatagta tccatgcagg gtgcttgtct
     6961 gtgcttcacc aatgaaattt tgcaaaagac atgttgctca ctgatagcta gaagttgtta
     7021 tttgttaact tttaaatctg tctgtggtca gagcataaat ggttgggttt taattcttgt
     7081 ccgaaaatga aataacttaa agcagcatgg gataacggtg gcattttttt tttaaccata
     7141 tgttggttct ttggtggaag aagcgaacgt aagatttttg ataatcagca taaatcttca
     7201 gaaatcagat ctgtaagagc tagaggtgaa atcctggagg ccttccaggc cctgcaccag
     7261 agggggcgtg aggaatcctg ccgctggctg gcaagggagg ggtggacggc cctgtgctcc
     7321 cggcaggcca ggcagaagca gctggaggga gtgagtcact tcttgaatat ctaatcgggg
     7381 ctggaattag gagtggggtg ggttttattt tcatttttct tttaacaagt tcccacccta
     7441 tcctaatcct cagaaattct ctggcctaag ctataaaata ggctgacttt tagaatcatt
     7501 gaaacttgga gatttctgtg tgttcaaatc aggaacacat ctaaaaacta aaaaaaaaaa
     7561 aaaaaaaaaa aaataaggca gggggaaggc tgctcccggc tcccagctgc catttcccca
     7621 gagtatttgg aggcacgcct gtgaataacg ctgggaaact cacaacatcg agatgatcgc
     7681 ggaaaggact cagacagggc ggctgttgga cacctttctt tcctgactca ggaagtagag
     7741 tttcccttct gagtagctcg ctgcatggtg tgttccagtc agggtccagc ccagatctgc
     7801 agtttggaaa cagatgggcc agctgtgtgg agcgcagtct ctggactccc ggggatttgt
     7861 tgcttgtctc tcatttcatt ttaaaacaga aagctcttct ttagcattca ccttaaagtc
     7921 aaggtaccgc cgcatgccat gtcccactag gataagagaa caagttaccg tggcgtcttg
     7981 acagcttggg aagctcacac tcgatgtcct tctacattgg gaagttgctt gtgctgggca
     8041 gtgcaaatta gacttgaatt acttcttaaa aggctgatgt gtccagcctc ctcattgtcc
     8101 gagctgctgc agacaagatc acttggaaca acttcctttg gcctcaggcc acctagaatt
     8161 ggtctctggt tatttgtaaa caaacagtag aactcgcttc cctttccaga taggctcggg
     8221 aatagatata attagacagc tttgccctat attgacagat acgaagagtt gggaatttgt
     8281 atatactgaa atctactgac atttatccgg ggtggggtac agggagaaag ggggttacag
     8341 tagggtaggg gagggggtgt agtgtttacc acaggtacga agtagccact ttaacactga
     8401 gacctctgcc tcattgaatt caggtttttt aagtacttga aactcctcag attctcctta
     8461 ttttacagtt actttaagat ttatgaagta gaaagcattg ttttgtatac tgttttgtct
     8521 cttaccctct tgaacttgga ttaaaggcaa agttctgcag acggaagtgt ccacagtagt
     8581 tctctcagat tcagtgcaca cattcgggga agagactcct gcatgaaata ccagcagcat
     8641 ttatacgagt acttcatatg tatgttctct gttttgttat tttgtcaacc ttatccccaa
     8701 gcacctcttc tttcctttta atatatgcct gcgtagggaa aaaaacaaaa atttgcactt
     8761 atgttactct cctgaaatgc tgggtgtaac ctgtgtgttt caaacccatt tccgttcttt
     8821 tcagtccatt gcttaagtga caagttcagg ttcgtgtggc acatatgtac gaaggaggaa
     8881 gagaattacc tgtcctttgg tggcgtccca gagtcattaa cgtttaagaa aaagggaaaa
     8941 gatgaatagt taccaaagtc atttattcag tccttcgttt tcttatgtga catcactgca
     9001 cctgctagtt ggcaagaaag caccctcggg tttcccttcc ccacctgcca cagacttatg
     9061 tgtgtgaatg cctctcggta tccatcagat gacctaataa atgagggatt catacagtat
     9121 tcttgtcagt ttagaagtgg actggataaa atttactttt actttgttgt cactaatatt
     9181 gctctttatc tcatttgtgc tgtcacatgc cctgtgttta aaaaaaaaaa aaaaaagaaa
     9241 atcatgttgc cactgataac caagatgcta attgatgact acaactggtt ctttttatat
     9301 acaagggtgt gtgcataatt ggaattgata ggagaaattc atttgtatcc acttgtgata
     9361 ttgcacaaca aaacacagat acctacagat tctgctctca tttcctcgtg atctttatga
     9421 taattacctt tgtagattgg ttatttctgt actttatctg taataaactt tgtagatcct
     9481 gtgaactgtt attttttgcc taaatccctt gagacttgag tctttaataa caaagcatca
     9541 atattcacta agtcaatctc tttcgagttt ctgtgacttg gctagaagct cttgacactc
     9601 aagattagtg ttcattttcc ctgggggtat tccactaggg cattactgta taatgacttg
     9661 atgttgccac atagacttca agatacatga tatttggggg attctgttga ttggcctatg
     9721 ttttattgca tagtgtgaga cgtgtaaagc ttggttaacc tgtatataga tagcttattg
     9781 ttgactagtt acggtgtagt agcattgcct gtaatattta agcttcttac tactgtgtgt
     9841 gctggtagga acatataatt tttgtacatt atatttactg agatgctgcc tttcttattt
     9901 tacaaatact ttggaattca aatgtgtttt ttgcttccgt gaggattaat ttggaaaggt
     9961 ttttaatgac attccactga tttcagattt tgcttgaggt tgacttcaat aaattgtccc
    10021 gtatgttgca aa
//
LOCUS       XM_032618275            9987 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X6, mRNA.
ACCESSION   XM_032618275
VERSION     XM_032618275.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9987
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9987
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746681"
     CDS             153..4352
                     /gene="NSD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD3 isoform
                     X4"
                     /protein_id="XP_032474166.1"
                     /db_xref="GeneID:116746681"
                     /translation="MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNNSDIVEDG
                     GQTPYEATLQQGFQYPPTTEDLPPLTNGYPSSISMYETQTKYQSYNQYPNGSANGFGA
                     VRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPPPSVPQTVIPKKTGSPEIKLKITKT
                     IQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPR
                     LEPEEQNRPNERVDTVSEKPREDPVLKEELPVQPMLPSVPTTEVSAGVKFQVGDLVWS
                     KVGTYPWWPCMVSSDPQLEVHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHK
                     QYEELLAEATRQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF
                     IYIDKQPEEALSQAKKNVASKAEVKKTRRPRSVLNTQPEQTSAGEAASSLSGTEIRRH
                     SQRRHTSVEEDEPPPVKVAWKTAAARKSLPASITMHKGSLDLQKCNMSPVVKIEQVFA
                     LQNATGDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISTPNQRNEKATQNMSSPETAS
                     GPAGSVEKKQQRRSIRTRSESEKSTEVVPKKKIKKEQVETVPQATVKTGLQKGASEIS
                     DSCKPLKKRSRASTDVEMASSTYRDTSDSDSRGLSDLQVGFGKQVDSPSATADADASD
                     VQSVDSSLSRRGTGMSRKDTVCQICESSGDSLIPCEGECCKHFHLECLGLTSFPDGKF
                     ICVECKTGEHPCFSCKVSGTDVKRCSVGACGKFYHEACVRKFPTAIFESKGFRCPQHC
                     CSACCMEKDIHKASKGRMMRCLRCPVAYHSGDACIAAGSIFLSSYVLICSNHSKRSSN
                     SSSAVNVGFCFVCARGLIVQDHSDPMFSSYAYKSHYLLNESNRAELMKLPMIPSSSAS
                     KKKCEKGGRLLCCESCPASFHPECLSIEMPEGCWNCNDCKAGKKLHYKQIVWVKLGNY
                     RWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEG
                     QTSINKTFKKALEEAAKRFQELKAQRESKEALEIEKNSRKPPPYKHIKANKVIGKVQI
                     QVADLSEIPRCNCKPADENPCGLESECLNRMLQYECHPQVCPAGERCQNQCFTKRLYP
                     DAEIIKTERRGWGLRTKRSIKKDRIIDAGPKGNYSRFMNHSCNPNCETQKWTVNGDVR
                     VGLFALCDIPAGMELTFNYNLDCLGNGRTECHCGAENCSGFLGVRPKSACASTTEEKA
                     KNAKLKQKRRKIKTEPKQLHEDHCFQCGDSGELVMCDRKDCPKAYHLLCLNLPQPPYG
                     KWECPWHQCDECSGAAVSFCEFCPRSFCKDHEKGALVPSALEGRLCCSEHDPVSPVSP
                     EYWSKIKCKLESQDHGEEVKE"
     misc_feature    954..1343
                     /gene="NSD3"
                     /note="first PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt1; cd20163"
                     /db_xref="CDD:438991"
     misc_feature    order(993..995,1002..1004,1086..1088)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438991"
     misc_feature    996..1007
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438991"
     misc_feature    order(1197..1205,1212..1217)
                     /gene="NSD3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438991"
     misc_feature    <1956..2390
                     /gene="NSD3"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; Region: TNG2;
                     COG5034"
                     /db_xref="CDD:227367"
     misc_feature    2259..2390
                     /gene="NSD3"
                     /note="PHD finger 1 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD1_NSD3; cd15649"
                     /db_xref="CDD:277119"
     misc_feature    order(2259..2261,2289..2303,2316..2318,2370..2372)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277119"
     misc_feature    2403..2543
                     /gene="NSD3"
                     /note="PHD finger 2 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD2_NSD3; cd15652"
                     /db_xref="CDD:277122"
     misc_feature    order(2403..2405,2433..2447,2463..2465,2526..2528)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277122"
     misc_feature    2544..2693
                     /gene="NSD3"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    order(2544..2546,2598..2609,2619..2621,2685..2687)
                     /gene="NSD3"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276966"
     misc_feature    2904..3011
                     /gene="NSD3"
                     /note="PHD finger 4 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD4_NSD3; cd15658"
                     /db_xref="CDD:277128"
     misc_feature    order(2919..2933,2943..2945,2994..2996)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277128"
     misc_feature    3030..3314
                     /gene="NSD3"
                     /note="second PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt2; cd20166"
                     /db_xref="CDD:438994"
     misc_feature    order(3066..3068,3075..3077,3159..3161)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438994"
     misc_feature    3069..3080
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438994"
     misc_feature    3465..3581
                     /gene="NSD3"
                     /note="AWS domain; Region: AWS; pfam17907"
                     /db_xref="CDD:465559"
     misc_feature    3585..3893
                     /gene="NSD3"
                     /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
                     domain superfamily; Region: SET; cl40432"
                     /db_xref="CDD:394802"
     misc_feature    order(3621..3626,3693..3710,3732..3740,3813..3824)
                     /gene="NSD3"
                     /note="active site"
                     /db_xref="CDD:380914"
     misc_feature    order(3621..3626,3696..3710,3819..3821)
                     /gene="NSD3"
                     /note="SAM binding site [polypeptide binding]; other site"
                     /db_xref="CDD:380914"
     misc_feature    4005..4133
                     /gene="NSD3"
                     /note="PHD finger 5 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD5_NSD3; cd15661"
                     /db_xref="CDD:277131"
     misc_feature    order(4005..4007,4032..4046,4062..4064,4116..4118)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277131"
     misc_feature    4128..4277
                     /gene="NSD3"
                     /note="NSD Cys-His rich domain; Region: C5HCH; pfam17982"
                     /db_xref="CDD:465605"
ORIGIN      
        1 ctcccgcggc cccggcggct gcctgcaccc tagccctact ccgggcctcc gtgtgtctcc
       61 tgtgatcgta ctgacacggc cggggggtta gaatggaaca aagtgaaggc ccgatgagag
      121 aaagggaaag ttaaggatgc tggagcagaa caatggattt ctctttctct ttcatgcaag
      181 ggatcatggg aaacacaatt cagcaaccac ctcaactcat tgactccgcc aacatccgtc
      241 aggaggatgc ctttgataac aacagtgaca ttgttgaaga tggtggccag acaccatacg
      301 aagctacctt gcagcaaggc tttcagtacc cacctacaac agaagatctt cctccactca
      361 cgaatggcta cccatcatca atcagcatgt acgaaactca aaccaaatac cagtcctata
      421 accagtatcc caatgggtcg gccaatggct ttggtgcagt tagaaacttt agccccactg
      481 actattacca ttcagaaatt ccaaacacaa gaccacatga aattctggaa aaaccttctc
      541 ctccacagcc accacctcct ccttcagtac cacagactgt gattccaaag aagactggct
      601 cacctgaaat taaactaaaa ataaccaaaa ctatccagaa tggcagggaa ttgtttgagt
      661 cttccctttg tggagacctt ttaaatgaag tacaggcaag tgagcacaca aagtcaaagc
      721 atgaaagcag aaaagaaaag aggaaaaaaa gcaacaagca cgattcatct agatctgaag
      781 agcgcaagtc acacaaaatc cccagattag aaccagagga acaaaataga ccaaatgaga
      841 gggttgacac tgtatcagaa aaaccaagag aagatccagt actgaaagag gagctcccgg
      901 ttcagccgat gttaccttct gttccaacaa cagaagtgtc tgctggtgtt aagttccagg
      961 ttggcgatct tgtttggtct aaggtgggaa cctatccttg gtggccttgt atggtttcaa
     1021 gtgatcccca actcgaggtt cacaccaaaa ttaacacaag aggtgcccgg gaatatcacg
     1081 tccaattttt tagcaaccag ccagagaggg cgtgggttca cgaaaagcgg gtccgagagt
     1141 acaaaggtca caaacagtat gaagaactac tggccgaggc gaccagacaa gccagcaatc
     1201 actctgagaa acagaagatt cggaaacccc ggcctcagag agaacgtgct cagtgggata
     1261 tcggcattgc ccacgcagag aaagcattga aaatgacccg ggaggaaaga attgaacagt
     1321 atacttttat ctacattgat aaacagcctg aggaggcttt atcccaagca aaaaagaatg
     1381 ttgcctccaa ggctgaagtt aaaaaaaccc gaaggccaag atcagtgctg aatactcagc
     1441 cagaacagac cagtgcaggc gaggcggcct cctcactatc aggtactgaa attcggagac
     1501 acagccagag gcggcacact agcgtggaag aggacgaacc acctcccgtt aaagtagcct
     1561 ggaaaacggc agctgcgagg aaatccttac cagcttccat cacaatgcac aaagggagcc
     1621 tggatttgca gaagtgtaac atgtctccag ttgtgaaaat tgaacaagtg tttgctcttc
     1681 agaatgctac aggagatggg aaatttatcg atcagtttgt ttattcaacg aagggaattg
     1741 gtaacaaaac agaaataagt gtcaggggac aagacagact tataatttct acaccaaacc
     1801 agaggaatga aaaggcaact cagaatatgt catctcctga aacagcatct ggtcctgcag
     1861 gctcagtaga aaagaagcaa cagagaagat ccattagaac ccgttccgaa tcagagaaat
     1921 ccactgaggt cgtgccaaag aagaagatca aaaaggagca ggttgaaaca gttcctcagg
     1981 ctacagtgaa gactggatta caaaaaggtg ccagcgagat ttcagattcc tgtaaacctc
     2041 taaagaaaag gagccgcgcc tcaactgatg tagaaatggc tagttccacg tacagagaca
     2101 cgtctgactc cgattccaga ggactgagtg acctgcaggt aggctttgga aagcaagtcg
     2161 atagcccttc agctactgca gacgcagatg cttctgacgt gcagtccgtg gattcaagtt
     2221 tgtcaagaag aggcactgga atgagtagga aggacactgt atgtcagatc tgtgaaagct
     2281 ctggggattc tctgattcct tgcgagggag agtgctgcaa acacttccac ctggagtgcc
     2341 tgggattgac atcattccct gatggaaagt tcatctgcgt cgaatgtaaa actggagagc
     2401 acccgtgttt ttcatgtaaa gtgtctggta cagacgtgaa gcgttgctct gttggtgctt
     2461 gtgggaaatt ttaccatgaa gcctgtgtcc gcaaattccc cactgccatc tttgaatcaa
     2521 aaggattccg ctgtccccag cactgctgct ctgcctgctg tatggagaaa gatatccaca
     2581 aagcaagtaa aggtcgcatg atgagatgtt tgaggtgccc agtagcctac cactctggag
     2641 atgcttgcat tgctgccggc agcatatttc tgtcttccta cgttctcatc tgtagtaatc
     2701 attccaaacg gagcagtaac tcttcctctg ctgtaaatgt aggcttttgt ttcgtttgtg
     2761 caagagggct gatagtgcag gaccattcag accccatgtt cagttcctat gcctataagt
     2821 cccactacct actgaacgaa tcaaatcgtg cagagttgat gaaattacct atgattcctt
     2881 cttcgtcagc ttccaaaaag aaatgtgaga aaggtggaag attgctctgc tgtgagtcgt
     2941 gcccggcttc cttccacccg gagtgcctga gcatagagat gccagaaggc tgctggaatt
     3001 gcaatgactg taaagctggc aagaaactac attacaagca gattgtttgg gtcaaattgg
     3061 gaaattacag gtggtggccg gcggagatct gcaacccccg gtctgtgcca ctcaacatcc
     3121 agggcctcaa gcatgacctg ggggacttcc ccgtgttctt cttcggttct cacgactact
     3181 actgggtaca ccagggcaga gtgttccctt acgtcgaagg agacaaaagc tttgctgagg
     3241 gacagactag tattaacaag accttcaaaa aagcgttgga agaagctgca aaacgtttcc
     3301 aggaattgaa agcgcaaaga gaaagtaaag aagcactaga gattgaaaaa aactcaagaa
     3361 aaccccctcc ttacaaacac atcaaagcta acaaagtgat aggaaaggta cagatccagg
     3421 ttgcagacct gtcagagatt ccccgctgta actgcaagcc ggctgacgag aacccgtgtg
     3481 gcttggagtc cgagtgcctg aacagaatgc tgcagtatga gtgtcacccg caggtgtgcc
     3541 cggcagggga gcgctgccag aaccagtgct tcaccaagag gctctacccg gacgcagaaa
     3601 tcatcaagac agagcggaga ggctggggcc tcaggaccaa aaggagcatc aagaaggacc
     3661 gtatcattga cgctggcccg aagggaaatt attctcgctt tatgaaccac agttgtaatc
     3721 caaactgtga aacacaaaag tggacggtga atggagatgt tcgagttggc ctttttgctc
     3781 tttgtgacat tcctgcaggg atggagctaa catttaatta caacctggac tgtctgggca
     3841 atggcaggac ggagtgccac tgcggggcag agaactgcag tggtttcctc ggcgtgcggc
     3901 caaagtcggc atgtgcgtcc acaactgaag aaaaggcaaa aaacgctaag ctgaagcaga
     3961 agagacgaaa aatcaaaaca gagccgaagc agctgcatga agatcactgc ttccagtgcg
     4021 gggacagcgg cgagctggtc atgtgcgaca ggaaggattg ccccaaagcc taccacctgc
     4081 tctgcctcaa cctgccccag ccgccctacg gaaagtggga gtgcccgtgg catcagtgcg
     4141 atgagtgcag cggcgcagct gtgtccttct gtgagttctg tccacgttcg ttttgcaaag
     4201 atcatgaaaa gggggctctg gtgccctccg ccctggaagg ccgtctctgc tgctctgaac
     4261 atgaccctgt atctcccgtg tcacccgaat actggagcaa gatcaaatgt aaattggaat
     4321 cacaggatca tggagaagaa gtcaaagaat aaatgggcag tgatttcctt ctttttttat
     4381 tgaaacgaag aaaggaaaag aaaaaagaga atgagttagt acaagaagag accgctgcag
     4441 tgcatacagc cttggccatc agcgctgccc tattaaagtg aagatgggga accaggccgt
     4501 gcaggcagaa gccgttggtg ggatctggtt tttcagtttc gtcctgtcag cttggggatt
     4561 cttttgtgga gggttaggtt cccttggtct tttcttgcct tttattgtgc ttcaatgcct
     4621 ttgcagctgg caaaagagat gtcttcgctt ttaaaataag aacaaagaga agtagttctg
     4681 ttaatgagat aaatttaaag tctaggatgt gttccttggg tgtaaaaagc aaaagtagcc
     4741 atcattcctt tatttatttt catttttaaa aattttgaga agtgtagttc agatagtcta
     4801 atctgtgtgt gtgtgtgtct ttgtgtgtgt gtgtgtgtgt gtgtgtgttt taagtaggaa
     4861 ttgcagaaag ccctctagaa aagggtatgg tggtcttacc tctttcctga gcagtaggga
     4921 ggctggcttc gctttccctt ccagacgcct ctcgtagtct tagagaaggg ctctgtggga
     4981 gtattgaatc tggcctcttg aaatcaaaag gcctcagtga atattacctc tgtggtctta
     5041 aactaggtgg gctttccgat ataactttac ctagaaaggt atataatgtg gttgttggtt
     5101 ttttgttctg gagaaaaaaa gaaatggatg ccctcactga gtctgaagcg ttctccactg
     5161 ataatgggtg tttttgatga agtgcgtctc tgtggatatg aatacagagt tagaatggtc
     5221 attcctgttg tcttgacaca ctggtaaagg cagctaaagg gagttgaaag gcacagacca
     5281 aaagttgggt caaataagca ccattttcta tccaatttaa tgtacaccct ggtctgactt
     5341 ggagagaatt acgggcattt taattttctg tctctgcttt cctctcccaa gcaaacattc
     5401 cctttgtcag ctgaccactc agtcacgtgt cctggtgaaa gctacacgga tgaatttgaa
     5461 ctgtatttgg atagatcttc ttgttcagtt ccgaatttgg gggtgaaagt ggtagcactt
     5521 gcacttctac agggtaaagg agagccacag aaacacactt cacggcagga agcacttagg
     5581 gagagctcca cagaaagcag tgatagcagg aatggttgga gctcagagac gcaagtgaac
     5641 cggaatatct gcccacagaa ctcactggct ttgaatgcct aggaatatgt atattccagg
     5701 attcccttat gaatgaatta gtcccgtcag acattgttgt aacactgcac taagtagaag
     5761 cctaggttta gcttgaatga acgtcagctt ctctgtgaat tttgactgct aacaattgcc
     5821 ggtacctggt agcatttatt ttccctcagg aagtacccag tgaccttata aaggcaggga
     5881 agatagatgc tccacagcat tccttcagtt gtgctgtgtg ttccttttcc ttatcaattt
     5941 acaactcttc tctggaaaaa agaagaaaaa aatctgtttt gtgcttcttt tttattttct
     6001 ttgtatgtaa atgtgcaatt atactggatt ttttcttgtt aaaaaaaaaa aaaaagacaa
     6061 acaaaaaaca ctacaattcc tttacttaag ctcctaaact gccacttgcc tgattccagc
     6121 aagtaattct gaggtaactt attgggcctc cagtaattct gttgattaga tatggtccca
     6181 aaagaaagag caagatagaa aatgctatat gtgttaccaa atgcgactgc tacaagtcac
     6241 atgaattaca gctcaccaaa acactaaagt ttgctcttga gcaatcatat agtttgatgt
     6301 ccttttaaaa aataatttaa gaaaatctag gttttatcat actaaaactt tattttatat
     6361 atgtatatga taaatgtttg cttttttaaa cttactaaca tgaaggattt cctttaatat
     6421 ctgaaatgca cctcgtgttg aaacggtatc caacatggaa tcttatctcc ttgctttgtt
     6481 ttggacttag tgctatttaa tatctggtga cttttatatg gtaagccagg gtatatcctg
     6541 tatactacaa ataccttagg tttaagtatt tttatgcagc ttcttcattg tgtcacattt
     6601 tgtttgtgta tctgtagcag agctccgctg gggggtgcta cagcggaggg ggggtggggg
     6661 gttggctaat agggttgttc tgccatttca gaaatcaggg cggaaaacac catcgctgac
     6721 cgcagccatg ggtcttggtc cgcgagtgtc ctttaacggt ctggaacgtg gctttagtcc
     6781 tggcagtgcc agggagctct cctcacacct cgtactgttg cctagtttgt atattttaaa
     6841 ggtgcaggct atggaagcag aaaaagaata agttgtgctt tatatgtgca tagtatccat
     6901 gcagggtgct tgtctgtgct tcaccaatga aattttgcaa aagacatgtt gctcactgat
     6961 agctagaagt tgttatttgt taacttttaa atctgtctgt ggtcagagca taaatggttg
     7021 ggttttaatt cttgtccgaa aatgaaataa cttaaagcag catgggataa cggtggcatt
     7081 ttttttttaa ccatatgttg gttctttggt ggaagaagcg aacgtaagat ttttgataat
     7141 cagcataaat cttcagaaat cagatctgta agagctagag gtgaaatcct ggaggccttc
     7201 caggccctgc accagagggg gcgtgaggaa tcctgccgct ggctggcaag ggaggggtgg
     7261 acggccctgt gctcccggca ggccaggcag aagcagctgg agggagtgag tcacttcttg
     7321 aatatctaat cggggctgga attaggagtg gggtgggttt tattttcatt tttcttttaa
     7381 caagttccca ccctatccta atcctcagaa attctctggc ctaagctata aaataggctg
     7441 acttttagaa tcattgaaac ttggagattt ctgtgtgttc aaatcaggaa cacatctaaa
     7501 aactaaaaaa aaaaaaaaaa aaaaaaaata aggcaggggg aaggctgctc ccggctccca
     7561 gctgccattt ccccagagta tttggaggca cgcctgtgaa taacgctggg aaactcacaa
     7621 catcgagatg atcgcggaaa ggactcagac agggcggctg ttggacacct ttctttcctg
     7681 actcaggaag tagagtttcc cttctgagta gctcgctgca tggtgtgttc cagtcagggt
     7741 ccagcccaga tctgcagttt ggaaacagat gggccagctg tgtggagcgc agtctctgga
     7801 ctcccgggga tttgttgctt gtctctcatt tcattttaaa acagaaagct cttctttagc
     7861 attcacctta aagtcaaggt accgccgcat gccatgtccc actaggataa gagaacaagt
     7921 taccgtggcg tcttgacagc ttgggaagct cacactcgat gtccttctac attgggaagt
     7981 tgcttgtgct gggcagtgca aattagactt gaattacttc ttaaaaggct gatgtgtcca
     8041 gcctcctcat tgtccgagct gctgcagaca agatcacttg gaacaacttc ctttggcctc
     8101 aggccaccta gaattggtct ctggttattt gtaaacaaac agtagaactc gcttcccttt
     8161 ccagataggc tcgggaatag atataattag acagctttgc cctatattga cagatacgaa
     8221 gagttgggaa tttgtatata ctgaaatcta ctgacattta tccggggtgg ggtacaggga
     8281 gaaagggggt tacagtaggg taggggaggg ggtgtagtgt ttaccacagg tacgaagtag
     8341 ccactttaac actgagacct ctgcctcatt gaattcaggt tttttaagta cttgaaactc
     8401 ctcagattct ccttatttta cagttacttt aagatttatg aagtagaaag cattgttttg
     8461 tatactgttt tgtctcttac cctcttgaac ttggattaaa ggcaaagttc tgcagacgga
     8521 agtgtccaca gtagttctct cagattcagt gcacacattc ggggaagaga ctcctgcatg
     8581 aaataccagc agcatttata cgagtacttc atatgtatgt tctctgtttt gttattttgt
     8641 caaccttatc cccaagcacc tcttctttcc ttttaatata tgcctgcgta gggaaaaaaa
     8701 caaaaatttg cacttatgtt actctcctga aatgctgggt gtaacctgtg tgtttcaaac
     8761 ccatttccgt tcttttcagt ccattgctta agtgacaagt tcaggttcgt gtggcacata
     8821 tgtacgaagg aggaagagaa ttacctgtcc tttggtggcg tcccagagtc attaacgttt
     8881 aagaaaaagg gaaaagatga atagttacca aagtcattta ttcagtcctt cgttttctta
     8941 tgtgacatca ctgcacctgc tagttggcaa gaaagcaccc tcgggtttcc cttccccacc
     9001 tgccacagac ttatgtgtgt gaatgcctct cggtatccat cagatgacct aataaatgag
     9061 ggattcatac agtattcttg tcagtttaga agtggactgg ataaaattta cttttacttt
     9121 gttgtcacta atattgctct ttatctcatt tgtgctgtca catgccctgt gtttaaaaaa
     9181 aaaaaaaaaa agaaaatcat gttgccactg ataaccaaga tgctaattga tgactacaac
     9241 tggttctttt tatatacaag ggtgtgtgca taattggaat tgataggaga aattcatttg
     9301 tatccacttg tgatattgca caacaaaaca cagataccta cagattctgc tctcatttcc
     9361 tcgtgatctt tatgataatt acctttgtag attggttatt tctgtacttt atctgtaata
     9421 aactttgtag atcctgtgaa ctgttatttt ttgcctaaat cccttgagac ttgagtcttt
     9481 aataacaaag catcaatatt cactaagtca atctctttcg agtttctgtg acttggctag
     9541 aagctcttga cactcaagat tagtgttcat tttccctggg ggtattccac tagggcatta
     9601 ctgtataatg acttgatgtt gccacataga cttcaagata catgatattt gggggattct
     9661 gttgattggc ctatgtttta ttgcatagtg tgagacgtgt aaagcttggt taacctgtat
     9721 atagatagct tattgttgac tagttacggt gtagtagcat tgcctgtaat atttaagctt
     9781 cttactactg tgtgtgctgg taggaacata taatttttgt acattatatt tactgagatg
     9841 ctgcctttct tattttacaa atactttgga attcaaatgt gttttttgct tccgtgagga
     9901 ttaatttgga aaggttttta atgacattcc actgatttca gattttgctt gaggttgact
     9961 tcaataaatt gtcccgtatg ttgcaaa
//
LOCUS       XM_032618276            9957 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X7, mRNA.
ACCESSION   XM_032618276
VERSION     XM_032618276.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9957
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9957
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746681"
     CDS             153..4322
                     /gene="NSD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD3 isoform
                     X5"
                     /protein_id="XP_032474167.1"
                     /db_xref="GeneID:116746681"
                     /translation="MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNNSDIVEDG
                     GQTPYEATLQQGFQYPPTTEDLPPLTNGYPSSISMYETQTKYQSYNQYPNGSANGFGA
                     VRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPPPSVPQTVIPKKTGSPEIKLKITKT
                     IQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPR
                     LEPEEQNRPNERVDTVSEKPREDPVLKEELPVQPMLPSVPTTEVSAGVKFQVGDLVWS
                     KVGTYPWWPCMVSSDPQLEVHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHK
                     QYEELLAEATRQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF
                     IYIDKQPEEALSQAKKNVASKAEVKKTRRPRSVLNTQPEQTSAGEAASSLSGTEIRRH
                     SQRRHTSVEEDEPPPVKVAWKTAAARKSLPASITMHKGSLDLQKCNMSPVVKIEQVFA
                     LQNATGDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISTPNQRNEKATQNMSSPETAS
                     GPAGSVEKKQQRRSIRTRSESEKSTEVVPKKKIKKEQVETVPQATVKTGLQKGASEIS
                     DSCKPLKKRSRASTDVEMASSTYRDTSDSDSRGLSDLQVGFGKQVDSPSATADADASD
                     VQSVDSSLSRRGTGMSRKDTVCQICESSGDSLIPCEGECCKHFHLECLGLTSFPDGKF
                     ICVECKTGEHPCFSCKVSGTDVKRCSVGACGKFYHEACVRKFPTAIFESKGFRCPQHC
                     CSACCMEKDIHKASKGRMMRCLRCPVAYHSGDACIAAGSIFLSSYVLICSNHSKRSSN
                     SSSAVNVGFCFVCARGGRLLCCESCPASFHPECLSIEMPEGCWNCNDCKAGKKLHYKQ
                     IVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYV
                     EGDKSFAEGQTSINKTFKKALEEAAKRFQELKAQRESKEALEIEKNSRKPPPYKHIKA
                     NKVIGKVQIQVADLSEIPRCNCKPADENPCGLESECLNRMLQYECHPQVCPAGERCQN
                     QCFTKRLYPDAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHEN
                     SVTNFYMLTVTKDRIIDAGPKGNYSRFMNHSCNPNCETQKWTVNGDVRVGLFALCDIP
                     AGMELTFNYNLDCLGNGRTECHCGAENCSGFLGVRPKSACASTTEEKAKNAKLKQKRR
                     KIKTEPKQLHEDHCFQCGDSGELVMCDRKDCPKAYHLLCLNLPQPPYGKWECPWHQCD
                     ECSGAAVSFCEFCPRSFCKDHEKGALVPSALEGRLCCSEHDPVSPVSPEYWSKIKCKL
                     ESQDHGEEVKE"
     misc_feature    954..1343
                     /gene="NSD3"
                     /note="first PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt1; cd20163"
                     /db_xref="CDD:438991"
     misc_feature    order(993..995,1002..1004,1086..1088)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438991"
     misc_feature    996..1007
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438991"
     misc_feature    order(1197..1205,1212..1217)
                     /gene="NSD3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438991"
     misc_feature    <1956..2390
                     /gene="NSD3"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; Region: TNG2;
                     COG5034"
                     /db_xref="CDD:227367"
     misc_feature    2259..2390
                     /gene="NSD3"
                     /note="PHD finger 1 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD1_NSD3; cd15649"
                     /db_xref="CDD:277119"
     misc_feature    order(2259..2261,2289..2303,2316..2318,2370..2372)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277119"
     misc_feature    2403..2543
                     /gene="NSD3"
                     /note="PHD finger 2 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD2_NSD3; cd15652"
                     /db_xref="CDD:277122"
     misc_feature    order(2403..2405,2433..2447,2463..2465,2526..2528)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277122"
     misc_feature    2544..2693
                     /gene="NSD3"
                     /note="PHD finger superfamily; Region: PHD_SF; cl22851"
                     /db_xref="CDD:473978"
     misc_feature    order(2544..2546,2598..2609,2619..2621,2685..2687)
                     /gene="NSD3"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:276966"
     misc_feature    2745..2864
                     /gene="NSD3"
                     /note="PHD finger 4 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD4_NSD3; cd15658"
                     /db_xref="CDD:277128"
     misc_feature    order(2745..2747,2772..2786,2796..2798,2847..2849)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277128"
     misc_feature    2883..3167
                     /gene="NSD3"
                     /note="second PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt2; cd20166"
                     /db_xref="CDD:438994"
     misc_feature    order(2919..2921,2928..2930,3012..3014)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438994"
     misc_feature    2922..2933
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438994"
     misc_feature    3318..3434
                     /gene="NSD3"
                     /note="AWS domain; Region: AWS; pfam17907"
                     /db_xref="CDD:465559"
     misc_feature    3438..3863
                     /gene="NSD3"
                     /note="SET domain (including post-SET domain) found in
                     nuclear receptor-binding SET domain-containing protein 3
                     (NSD3) and similar proteins; Region: SET_NSD3; cd19212"
                     /db_xref="CDD:380989"
     misc_feature    order(3471..3479,3528..3530,3558..3560,3570..3572,
                     3597..3617,3666..3680,3699..3707,3750..3752,3783..3815,
                     3819..3833,3858..3860)
                     /gene="NSD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380989"
     misc_feature    order(3471..3479,3597..3608,3666..3680,3789..3791,
                     3810..3812,3822..3833,3858..3860)
                     /gene="NSD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3528..3530,3558..3560,3570..3572,3603..3617,
                     3699..3707,3750..3752,3783..3797)
                     /gene="NSD3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    order(3684..3686,3825..3827,3831..3833,3846..3848)
                     /gene="NSD3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:380989"
     misc_feature    3975..4103
                     /gene="NSD3"
                     /note="PHD finger 5 found in nuclear SET domain-containing
                     protein 3 (NSD3); Region: PHD5_NSD3; cd15661"
                     /db_xref="CDD:277131"
     misc_feature    order(3975..3977,4002..4016,4032..4034,4086..4088)
                     /gene="NSD3"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277131"
     misc_feature    4098..4247
                     /gene="NSD3"
                     /note="NSD Cys-His rich domain; Region: C5HCH; pfam17982"
                     /db_xref="CDD:465605"
ORIGIN      
        1 ctcccgcggc cccggcggct gcctgcaccc tagccctact ccgggcctcc gtgtgtctcc
       61 tgtgatcgta ctgacacggc cggggggtta gaatggaaca aagtgaaggc ccgatgagag
      121 aaagggaaag ttaaggatgc tggagcagaa caatggattt ctctttctct ttcatgcaag
      181 ggatcatggg aaacacaatt cagcaaccac ctcaactcat tgactccgcc aacatccgtc
      241 aggaggatgc ctttgataac aacagtgaca ttgttgaaga tggtggccag acaccatacg
      301 aagctacctt gcagcaaggc tttcagtacc cacctacaac agaagatctt cctccactca
      361 cgaatggcta cccatcatca atcagcatgt acgaaactca aaccaaatac cagtcctata
      421 accagtatcc caatgggtcg gccaatggct ttggtgcagt tagaaacttt agccccactg
      481 actattacca ttcagaaatt ccaaacacaa gaccacatga aattctggaa aaaccttctc
      541 ctccacagcc accacctcct ccttcagtac cacagactgt gattccaaag aagactggct
      601 cacctgaaat taaactaaaa ataaccaaaa ctatccagaa tggcagggaa ttgtttgagt
      661 cttccctttg tggagacctt ttaaatgaag tacaggcaag tgagcacaca aagtcaaagc
      721 atgaaagcag aaaagaaaag aggaaaaaaa gcaacaagca cgattcatct agatctgaag
      781 agcgcaagtc acacaaaatc cccagattag aaccagagga acaaaataga ccaaatgaga
      841 gggttgacac tgtatcagaa aaaccaagag aagatccagt actgaaagag gagctcccgg
      901 ttcagccgat gttaccttct gttccaacaa cagaagtgtc tgctggtgtt aagttccagg
      961 ttggcgatct tgtttggtct aaggtgggaa cctatccttg gtggccttgt atggtttcaa
     1021 gtgatcccca actcgaggtt cacaccaaaa ttaacacaag aggtgcccgg gaatatcacg
     1081 tccaattttt tagcaaccag ccagagaggg cgtgggttca cgaaaagcgg gtccgagagt
     1141 acaaaggtca caaacagtat gaagaactac tggccgaggc gaccagacaa gccagcaatc
     1201 actctgagaa acagaagatt cggaaacccc ggcctcagag agaacgtgct cagtgggata
     1261 tcggcattgc ccacgcagag aaagcattga aaatgacccg ggaggaaaga attgaacagt
     1321 atacttttat ctacattgat aaacagcctg aggaggcttt atcccaagca aaaaagaatg
     1381 ttgcctccaa ggctgaagtt aaaaaaaccc gaaggccaag atcagtgctg aatactcagc
     1441 cagaacagac cagtgcaggc gaggcggcct cctcactatc aggtactgaa attcggagac
     1501 acagccagag gcggcacact agcgtggaag aggacgaacc acctcccgtt aaagtagcct
     1561 ggaaaacggc agctgcgagg aaatccttac cagcttccat cacaatgcac aaagggagcc
     1621 tggatttgca gaagtgtaac atgtctccag ttgtgaaaat tgaacaagtg tttgctcttc
     1681 agaatgctac aggagatggg aaatttatcg atcagtttgt ttattcaacg aagggaattg
     1741 gtaacaaaac agaaataagt gtcaggggac aagacagact tataatttct acaccaaacc
     1801 agaggaatga aaaggcaact cagaatatgt catctcctga aacagcatct ggtcctgcag
     1861 gctcagtaga aaagaagcaa cagagaagat ccattagaac ccgttccgaa tcagagaaat
     1921 ccactgaggt cgtgccaaag aagaagatca aaaaggagca ggttgaaaca gttcctcagg
     1981 ctacagtgaa gactggatta caaaaaggtg ccagcgagat ttcagattcc tgtaaacctc
     2041 taaagaaaag gagccgcgcc tcaactgatg tagaaatggc tagttccacg tacagagaca
     2101 cgtctgactc cgattccaga ggactgagtg acctgcaggt aggctttgga aagcaagtcg
     2161 atagcccttc agctactgca gacgcagatg cttctgacgt gcagtccgtg gattcaagtt
     2221 tgtcaagaag aggcactgga atgagtagga aggacactgt atgtcagatc tgtgaaagct
     2281 ctggggattc tctgattcct tgcgagggag agtgctgcaa acacttccac ctggagtgcc
     2341 tgggattgac atcattccct gatggaaagt tcatctgcgt cgaatgtaaa actggagagc
     2401 acccgtgttt ttcatgtaaa gtgtctggta cagacgtgaa gcgttgctct gttggtgctt
     2461 gtgggaaatt ttaccatgaa gcctgtgtcc gcaaattccc cactgccatc tttgaatcaa
     2521 aaggattccg ctgtccccag cactgctgct ctgcctgctg tatggagaaa gatatccaca
     2581 aagcaagtaa aggtcgcatg atgagatgtt tgaggtgccc agtagcctac cactctggag
     2641 atgcttgcat tgctgccggc agcatatttc tgtcttccta cgttctcatc tgtagtaatc
     2701 attccaaacg gagcagtaac tcttcctctg ctgtaaatgt aggcttttgt ttcgtttgtg
     2761 caagaggtgg aagattgctc tgctgtgagt cgtgcccggc ttccttccac ccggagtgcc
     2821 tgagcataga gatgccagaa ggctgctgga attgcaatga ctgtaaagct ggcaagaaac
     2881 tacattacaa gcagattgtt tgggtcaaat tgggaaatta caggtggtgg ccggcggaga
     2941 tctgcaaccc ccggtctgtg ccactcaaca tccagggcct caagcatgac ctgggggact
     3001 tccccgtgtt cttcttcggt tctcacgact actactgggt acaccagggc agagtgttcc
     3061 cttacgtcga aggagacaaa agctttgctg agggacagac tagtattaac aagaccttca
     3121 aaaaagcgtt ggaagaagct gcaaaacgtt tccaggaatt gaaagcgcaa agagaaagta
     3181 aagaagcact agagattgaa aaaaactcaa gaaaaccccc tccttacaaa cacatcaaag
     3241 ctaacaaagt gataggaaag gtacagatcc aggttgcaga cctgtcagag attccccgct
     3301 gtaactgcaa gccggctgac gagaacccgt gtggcttgga gtccgagtgc ctgaacagaa
     3361 tgctgcagta tgagtgtcac ccgcaggtgt gcccggcagg ggagcgctgc cagaaccagt
     3421 gcttcaccaa gaggctctac ccggacgcag aaatcatcaa gacagagcgg agaggctggg
     3481 gcctcaggac caaaaggagc atcaagaagg gtgaatttgt aaatgaatat gttggcgaat
     3541 taattgatga ggaagaatgc agattgcgaa tcaagcgagc ccacgagaac agtgtaacta
     3601 atttttatat gttaactgtt accaaggacc gtatcattga cgctggcccg aagggaaatt
     3661 attctcgctt tatgaaccac agttgtaatc caaactgtga aacacaaaag tggacggtga
     3721 atggagatgt tcgagttggc ctttttgctc tttgtgacat tcctgcaggg atggagctaa
     3781 catttaatta caacctggac tgtctgggca atggcaggac ggagtgccac tgcggggcag
     3841 agaactgcag tggtttcctc ggcgtgcggc caaagtcggc atgtgcgtcc acaactgaag
     3901 aaaaggcaaa aaacgctaag ctgaagcaga agagacgaaa aatcaaaaca gagccgaagc
     3961 agctgcatga agatcactgc ttccagtgcg gggacagcgg cgagctggtc atgtgcgaca
     4021 ggaaggattg ccccaaagcc taccacctgc tctgcctcaa cctgccccag ccgccctacg
     4081 gaaagtggga gtgcccgtgg catcagtgcg atgagtgcag cggcgcagct gtgtccttct
     4141 gtgagttctg tccacgttcg ttttgcaaag atcatgaaaa gggggctctg gtgccctccg
     4201 ccctggaagg ccgtctctgc tgctctgaac atgaccctgt atctcccgtg tcacccgaat
     4261 actggagcaa gatcaaatgt aaattggaat cacaggatca tggagaagaa gtcaaagaat
     4321 aaatgggcag tgatttcctt ctttttttat tgaaacgaag aaaggaaaag aaaaaagaga
     4381 atgagttagt acaagaagag accgctgcag tgcatacagc cttggccatc agcgctgccc
     4441 tattaaagtg aagatgggga accaggccgt gcaggcagaa gccgttggtg ggatctggtt
     4501 tttcagtttc gtcctgtcag cttggggatt cttttgtgga gggttaggtt cccttggtct
     4561 tttcttgcct tttattgtgc ttcaatgcct ttgcagctgg caaaagagat gtcttcgctt
     4621 ttaaaataag aacaaagaga agtagttctg ttaatgagat aaatttaaag tctaggatgt
     4681 gttccttggg tgtaaaaagc aaaagtagcc atcattcctt tatttatttt catttttaaa
     4741 aattttgaga agtgtagttc agatagtcta atctgtgtgt gtgtgtgtct ttgtgtgtgt
     4801 gtgtgtgtgt gtgtgtgttt taagtaggaa ttgcagaaag ccctctagaa aagggtatgg
     4861 tggtcttacc tctttcctga gcagtaggga ggctggcttc gctttccctt ccagacgcct
     4921 ctcgtagtct tagagaaggg ctctgtggga gtattgaatc tggcctcttg aaatcaaaag
     4981 gcctcagtga atattacctc tgtggtctta aactaggtgg gctttccgat ataactttac
     5041 ctagaaaggt atataatgtg gttgttggtt ttttgttctg gagaaaaaaa gaaatggatg
     5101 ccctcactga gtctgaagcg ttctccactg ataatgggtg tttttgatga agtgcgtctc
     5161 tgtggatatg aatacagagt tagaatggtc attcctgttg tcttgacaca ctggtaaagg
     5221 cagctaaagg gagttgaaag gcacagacca aaagttgggt caaataagca ccattttcta
     5281 tccaatttaa tgtacaccct ggtctgactt ggagagaatt acgggcattt taattttctg
     5341 tctctgcttt cctctcccaa gcaaacattc cctttgtcag ctgaccactc agtcacgtgt
     5401 cctggtgaaa gctacacgga tgaatttgaa ctgtatttgg atagatcttc ttgttcagtt
     5461 ccgaatttgg gggtgaaagt ggtagcactt gcacttctac agggtaaagg agagccacag
     5521 aaacacactt cacggcagga agcacttagg gagagctcca cagaaagcag tgatagcagg
     5581 aatggttgga gctcagagac gcaagtgaac cggaatatct gcccacagaa ctcactggct
     5641 ttgaatgcct aggaatatgt atattccagg attcccttat gaatgaatta gtcccgtcag
     5701 acattgttgt aacactgcac taagtagaag cctaggttta gcttgaatga acgtcagctt
     5761 ctctgtgaat tttgactgct aacaattgcc ggtacctggt agcatttatt ttccctcagg
     5821 aagtacccag tgaccttata aaggcaggga agatagatgc tccacagcat tccttcagtt
     5881 gtgctgtgtg ttccttttcc ttatcaattt acaactcttc tctggaaaaa agaagaaaaa
     5941 aatctgtttt gtgcttcttt tttattttct ttgtatgtaa atgtgcaatt atactggatt
     6001 ttttcttgtt aaaaaaaaaa aaaaagacaa acaaaaaaca ctacaattcc tttacttaag
     6061 ctcctaaact gccacttgcc tgattccagc aagtaattct gaggtaactt attgggcctc
     6121 cagtaattct gttgattaga tatggtccca aaagaaagag caagatagaa aatgctatat
     6181 gtgttaccaa atgcgactgc tacaagtcac atgaattaca gctcaccaaa acactaaagt
     6241 ttgctcttga gcaatcatat agtttgatgt ccttttaaaa aataatttaa gaaaatctag
     6301 gttttatcat actaaaactt tattttatat atgtatatga taaatgtttg cttttttaaa
     6361 cttactaaca tgaaggattt cctttaatat ctgaaatgca cctcgtgttg aaacggtatc
     6421 caacatggaa tcttatctcc ttgctttgtt ttggacttag tgctatttaa tatctggtga
     6481 cttttatatg gtaagccagg gtatatcctg tatactacaa ataccttagg tttaagtatt
     6541 tttatgcagc ttcttcattg tgtcacattt tgtttgtgta tctgtagcag agctccgctg
     6601 gggggtgcta cagcggaggg ggggtggggg gttggctaat agggttgttc tgccatttca
     6661 gaaatcaggg cggaaaacac catcgctgac cgcagccatg ggtcttggtc cgcgagtgtc
     6721 ctttaacggt ctggaacgtg gctttagtcc tggcagtgcc agggagctct cctcacacct
     6781 cgtactgttg cctagtttgt atattttaaa ggtgcaggct atggaagcag aaaaagaata
     6841 agttgtgctt tatatgtgca tagtatccat gcagggtgct tgtctgtgct tcaccaatga
     6901 aattttgcaa aagacatgtt gctcactgat agctagaagt tgttatttgt taacttttaa
     6961 atctgtctgt ggtcagagca taaatggttg ggttttaatt cttgtccgaa aatgaaataa
     7021 cttaaagcag catgggataa cggtggcatt ttttttttaa ccatatgttg gttctttggt
     7081 ggaagaagcg aacgtaagat ttttgataat cagcataaat cttcagaaat cagatctgta
     7141 agagctagag gtgaaatcct ggaggccttc caggccctgc accagagggg gcgtgaggaa
     7201 tcctgccgct ggctggcaag ggaggggtgg acggccctgt gctcccggca ggccaggcag
     7261 aagcagctgg agggagtgag tcacttcttg aatatctaat cggggctgga attaggagtg
     7321 gggtgggttt tattttcatt tttcttttaa caagttccca ccctatccta atcctcagaa
     7381 attctctggc ctaagctata aaataggctg acttttagaa tcattgaaac ttggagattt
     7441 ctgtgtgttc aaatcaggaa cacatctaaa aactaaaaaa aaaaaaaaaa aaaaaaaata
     7501 aggcaggggg aaggctgctc ccggctccca gctgccattt ccccagagta tttggaggca
     7561 cgcctgtgaa taacgctggg aaactcacaa catcgagatg atcgcggaaa ggactcagac
     7621 agggcggctg ttggacacct ttctttcctg actcaggaag tagagtttcc cttctgagta
     7681 gctcgctgca tggtgtgttc cagtcagggt ccagcccaga tctgcagttt ggaaacagat
     7741 gggccagctg tgtggagcgc agtctctgga ctcccgggga tttgttgctt gtctctcatt
     7801 tcattttaaa acagaaagct cttctttagc attcacctta aagtcaaggt accgccgcat
     7861 gccatgtccc actaggataa gagaacaagt taccgtggcg tcttgacagc ttgggaagct
     7921 cacactcgat gtccttctac attgggaagt tgcttgtgct gggcagtgca aattagactt
     7981 gaattacttc ttaaaaggct gatgtgtcca gcctcctcat tgtccgagct gctgcagaca
     8041 agatcacttg gaacaacttc ctttggcctc aggccaccta gaattggtct ctggttattt
     8101 gtaaacaaac agtagaactc gcttcccttt ccagataggc tcgggaatag atataattag
     8161 acagctttgc cctatattga cagatacgaa gagttgggaa tttgtatata ctgaaatcta
     8221 ctgacattta tccggggtgg ggtacaggga gaaagggggt tacagtaggg taggggaggg
     8281 ggtgtagtgt ttaccacagg tacgaagtag ccactttaac actgagacct ctgcctcatt
     8341 gaattcaggt tttttaagta cttgaaactc ctcagattct ccttatttta cagttacttt
     8401 aagatttatg aagtagaaag cattgttttg tatactgttt tgtctcttac cctcttgaac
     8461 ttggattaaa ggcaaagttc tgcagacgga agtgtccaca gtagttctct cagattcagt
     8521 gcacacattc ggggaagaga ctcctgcatg aaataccagc agcatttata cgagtacttc
     8581 atatgtatgt tctctgtttt gttattttgt caaccttatc cccaagcacc tcttctttcc
     8641 ttttaatata tgcctgcgta gggaaaaaaa caaaaatttg cacttatgtt actctcctga
     8701 aatgctgggt gtaacctgtg tgtttcaaac ccatttccgt tcttttcagt ccattgctta
     8761 agtgacaagt tcaggttcgt gtggcacata tgtacgaagg aggaagagaa ttacctgtcc
     8821 tttggtggcg tcccagagtc attaacgttt aagaaaaagg gaaaagatga atagttacca
     8881 aagtcattta ttcagtcctt cgttttctta tgtgacatca ctgcacctgc tagttggcaa
     8941 gaaagcaccc tcgggtttcc cttccccacc tgccacagac ttatgtgtgt gaatgcctct
     9001 cggtatccat cagatgacct aataaatgag ggattcatac agtattcttg tcagtttaga
     9061 agtggactgg ataaaattta cttttacttt gttgtcacta atattgctct ttatctcatt
     9121 tgtgctgtca catgccctgt gtttaaaaaa aaaaaaaaaa agaaaatcat gttgccactg
     9181 ataaccaaga tgctaattga tgactacaac tggttctttt tatatacaag ggtgtgtgca
     9241 taattggaat tgataggaga aattcatttg tatccacttg tgatattgca caacaaaaca
     9301 cagataccta cagattctgc tctcatttcc tcgtgatctt tatgataatt acctttgtag
     9361 attggttatt tctgtacttt atctgtaata aactttgtag atcctgtgaa ctgttatttt
     9421 ttgcctaaat cccttgagac ttgagtcttt aataacaaag catcaatatt cactaagtca
     9481 atctctttcg agtttctgtg acttggctag aagctcttga cactcaagat tagtgttcat
     9541 tttccctggg ggtattccac tagggcatta ctgtataatg acttgatgtt gccacataga
     9601 cttcaagata catgatattt gggggattct gttgattggc ctatgtttta ttgcatagtg
     9661 tgagacgtgt aaagcttggt taacctgtat atagatagct tattgttgac tagttacggt
     9721 gtagtagcat tgcctgtaat atttaagctt cttactactg tgtgtgctgg taggaacata
     9781 taatttttgt acattatatt tactgagatg ctgcctttct tattttacaa atactttgga
     9841 attcaaatgt gttttttgct tccgtgagga ttaatttgga aaggttttta atgacattcc
     9901 actgatttca gattttgctt gaggttgact tcaataaatt gtcccgtatg ttgcaaa
//
LOCUS       XR_004347844            3898 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X8, misc_RNA.
ACCESSION   XR_004347844
VERSION     XR_004347844.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3898
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3898
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746681"
     misc_RNA        1..3898
                     /gene="NSD3"
                     /product="nuclear receptor binding SET domain protein 3,
                     transcript variant X8"
                     /db_xref="GeneID:116746681"
ORIGIN      
        1 ctcccgcggc cccggcggct gcctgcaccc tagccctact ccgggcctcc gtgtgtctcc
       61 tgtgatcgta ctgacacggc cggggggtta gaatggaaca aagtgaaggc ccgatgagag
      121 aaagggaaag ttaaggatgc tggagcagaa caatggattt ctctttctct ttcatgcaag
      181 ggatcatggg aaacacaatt cagcaaccac ctcaactcat tgactccgcc aacatccgtc
      241 aggaggatgc ctttgataac aacagtgaca ttgttgaaga tggtggccag acaccatacg
      301 aagctacctt gcagcaaggc tttcagtacc cacctacaac agaagatctt cctccactca
      361 cgaatggcta cccatcatca atcagcatgt acgaaactca aaccaaatac cagtcctata
      421 accagtatcc caatgggtcg gccaatggct ttggtgcagt tagaaacttt agccccactg
      481 actattacca ttcagaaatt ccaaacacaa gaccacatga aattctggaa aaaccttctc
      541 ctccacagcc accacctcct ccttcagtac cacagactgt gattccaaag aagactggct
      601 cacctgaaat taaactaaaa ataaccaaaa ctatccagaa tggcagggaa ttgtttgagt
      661 cttccctttg tggagacctt ttaaatgaag tacaggcaag tgagcacaca aagtcaaagc
      721 atgaaagcag aaaagaaaag aggaaaaaaa gcaacaagca cgattcatct agatctgaag
      781 agcgcaagtc acacaaaatc cccagattag aaccagagga acaaaataga ccaaatgaga
      841 gggttgacac tgtatcagaa aaaccaagag aagatccagt actgaaagag gagctcccgg
      901 ttcagccgat gttaccttct gttccaacaa cagaagtgtc tgctggtgtt aagttccagg
      961 ttggcgatct tgtttggtct aaggtgggaa cctatccttg gtggccttgt atggtttcaa
     1021 gtgatcccca actcgaggtt cacaccaaaa ttaacacaag aggtgcccgg gaatatcacg
     1081 tccaattttt tagcaaccag ccagagaggg cgtgggttca cgaaaagcgg gtccgagagt
     1141 acaaaggtca caaacagtat gaagaactac tggccgaggc gaccagacaa gccagcaatc
     1201 actctgagaa acagaagatt cggaaacccc ggcctcagag agaacgtgct cagtgggata
     1261 tcggcattgc ccacgcagag aaagcattga aaatgacccg ggaggaaaga attgaacagt
     1321 atacttttat ctacattgat aaacagcctg aggaggcttt atcccaagca aaaaagaatg
     1381 ttgcctccaa ggctgaagtt aaaaaaaccc gaaggccaag atcagtgctg aatactcagc
     1441 cagaacagac cagtgcaggc gaggcggcct cctcactatc aggtactgaa attcggagac
     1501 acagccagag gcggcacact agcgtggaag aggacgaacc acctcccgtt aaagtagcct
     1561 ggaaaacggc agctgcgagg aaatccttac cagcttccat cacaatgcac aaagggagcc
     1621 tggatttgca gaagtgtaac atgtctccag ttgtgaaaat tgaacaagtg tttgctcttc
     1681 agaatgctac aggagatggg aaatttatcg atcagtttgt ttattcaacg aagggaattg
     1741 gtaacaaaac agaaataagt gtcaggggac aagacagact tataatttct acaccaaacc
     1801 agaggaatga aaaggcaact cagaatatgt catctcctga aacagcatct ggtcctgcag
     1861 gctcagtaga aaagaagcaa cagagaagat ccattagaac ccgttccgaa tcagagaaat
     1921 ccactgaggt cgtgccaaag aagaagatca aaaaggagca ggttgaaaca gttcctcagg
     1981 ctacagtgaa gactggatta caaaaaggtg ccagcgagat ttcagattcc tgtaaacctc
     2041 taaagaaaag gagccgcgcc tcaactgatg tagaaatggc tagttccacg tacagagaca
     2101 cgtctgactc cgattccaga ggactgagtg acctgcaggt aggctttgga aagcaagtcg
     2161 atagcccttc agctactgca gacgcagatg cttctgacgt gcagtccgtg gattcaagtt
     2221 tgtcaagaag aggcactgga atgagtagga aggacactgt atgtcagatc tgtgaaagct
     2281 ctggggattc tctgattcct tgcgagggag agtgctgcaa acacttccac ctggagtgcc
     2341 tgggattgac atcattccct gatggaaagt tcatctgcgt cgaatgtaaa actggagagc
     2401 acccgtgttt ttcatgtaaa gtgtctggta cagacgtgaa gcgttgctct gttggtgctt
     2461 gtgggaaatt ttaccatgaa gcctgtgtcc gcaaattccc cactgccatc tttgaatcaa
     2521 aaggattccg ctgtccccag cactgctgct ctgcctgctg tatggagaaa gatatccaca
     2581 aagcaagtaa aggtcgcatg atgagatgtt tgaggtgccc agtagcctac cactctggag
     2641 atgcttgcat tgctgccggc agcatatttc tgtcttccta cgttctcatc tgtagtaatc
     2701 attccaaacg gagcagtaac tcttcctctg ctgtaaatgt aggcttttgt ttcgtttgtg
     2761 caagagggct gatagtgcag gaccattcag accccatgtt cagttcctat gcctataagt
     2821 cccactacct actgaacgaa tcaaatcgtg cagagttgat gaaattacct atgattcctt
     2881 cttcgtcagc ttccaaaaag aaatgtgaga aaggtggaag attgctctgc tgtgagtcgt
     2941 gcccggcttc cttccacccg gagtgcctga gcatagagat gccagaaggc tgctggaatt
     3001 gcaatgactg taaagctggc aagaaactac attacaagca gattgtttgg gtcaaattgg
     3061 gaaattacag gtggtggccg gcggagatct gcaacccccg gtctgtgcca ctcaacatcc
     3121 agggcctcaa gcatgacctg ggggacttcc ccgtgttctt cttcggttct cacgactact
     3181 actgggtaca ccagggcaga gtgttccctt acgtcgaagg agacaaaagc tttgctgagg
     3241 gacagactag tattaacaag accttcaaaa aagcgttgga agaagctgca aaacgtttcc
     3301 aggaattgaa agcgcaaaga gaaagtaaag aagcactaga gattgaaaaa aactcaagaa
     3361 aaccccctcc ttacaaacac atcaaagcta acaaagtgat aggaaaggta cagatccagg
     3421 ttgcagacct gtcagagatt ccccgctgta actgcaagcc ggctgacgag aacccgtgtg
     3481 gcttggagtc cgagtgcctg aacagaatgc tgcagtatga gtgtcacccg caggtgtgcc
     3541 cggcagggga gcgctgccag aaccagtgct tcaccaagag gctctacccg gacgcagaaa
     3601 tcatcaagac agagcggaga ggctggggcc tcaggaccaa aaggagcatc aagaagggat
     3661 ggagctaaca tttaattaca acctggactg tctgggcaat ggcaggacgg agtgccactg
     3721 cggggcagag aactgcagtg gtttcctcgg cgtgcggcca aagtcggcat gtgcgtccac
     3781 aactgaagaa aaggcaaaaa acgctaagct gaagcagaag agacgaaaaa tcaaaacaga
     3841 gccgaagcag ctgcatgaag atcactgctt ccagtgcggg gacagcggcg agctggtc
//
LOCUS       XM_032618277            4062 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nuclear receptor binding SET domain
            protein 3 (NSD3), transcript variant X9, mRNA.
ACCESSION   XM_032618277
VERSION     XM_032618277.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4062
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4062
                     /gene="NSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746681"
     CDS             541..2478
                     /gene="NSD3"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD3 isoform
                     X6"
                     /protein_id="XP_032474168.1"
                     /db_xref="GeneID:116746681"
                     /translation="MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNNSDIVEDG
                     GQTPYEATLQQGFQYPPTTEDLPPLTNGYPSSISMYETQTKYQSYNQYPNGSANGFGA
                     VRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPPPSVPQTVIPKKTGSPEIKLKITKT
                     IQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPR
                     LEPEEQNRPNERVDTVSEKPREDPVLKEELPVQPMLPSVPTTEVSAGVKFQVGDLVWS
                     KVGTYPWWPCMVSSDPQLEVHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHK
                     QYEELLAEATRQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF
                     IYIDKQPEEALSQAKKNVASKAEVKKTRRPRSVLNTQPEQTSAGEAASSLSGTEIRRH
                     SQRRHTSVEEDEPPPVKVAWKTAAARKSLPASITMHKGSLDLQKCNMSPVVKIEQVFA
                     LQNATGDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISTPNQRNEKATQNMSSPETAS
                     GPAGSVEKKQQRRSIRTRSESEKSTEVVPKKKIKKEQVETVPQATVKTGLQKGSADRG
                     VQGSVRFSDSSVSAASEETVD"
     misc_feature    1342..1731
                     /gene="NSD3"
                     /note="first PWWP domain found in nuclear SET
                     domain-containing protein 3 (NSD3) and similar proteins;
                     Region: PWWP_NSD3_rpt1; cd20163"
                     /db_xref="CDD:438991"
     misc_feature    order(1381..1383,1390..1392,1474..1476)
                     /gene="NSD3"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438991"
     misc_feature    1384..1395
                     /gene="NSD3"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438991"
     misc_feature    order(1585..1593,1600..1605)
                     /gene="NSD3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:438991"
ORIGIN      
        1 gcggcggcgg cggcggcggc ggtggcggtg cctgtggcgg cgggagcggg cggcggcggc
       61 gaccaagacg gaggtggagg cggaggggga ctgtccactg gtcgccgcgg agaggcgtgc
      121 gaggccgagt cgagccccga cgacgaccct gctgccccag cccggccgcc agccacgggc
      181 tggtctctgg cagctgcagc tgcgcggcga cccccatccc tccggctccg ctgcccaccc
      241 caccgcccgc agtcttcctc ctcttgctgc gcgcccggcc cggcctggcc gtggccctcc
      301 tcggtgccgg ccgccatggc agaggcgtcc ggcgcggggg aaatctagcc cggggatttc
      361 atgcggccta gcttggttcc gcctcctcct cccgcggccc cggcggctgc ctgcacccta
      421 gccctactcc gggcctccgt gtgtctcctg tgatcgtact gacacggccg gggggttaga
      481 atggaacaaa gtgaaggccc gatgagagaa agggaaagtt aaggatgctg gagcagaaca
      541 atggatttct ctttctcttt catgcaaggg atcatgggaa acacaattca gcaaccacct
      601 caactcattg actccgccaa catccgtcag gaggatgcct ttgataacaa cagtgacatt
      661 gttgaagatg gtggccagac accatacgaa gctaccttgc agcaaggctt tcagtaccca
      721 cctacaacag aagatcttcc tccactcacg aatggctacc catcatcaat cagcatgtac
      781 gaaactcaaa ccaaatacca gtcctataac cagtatccca atgggtcggc caatggcttt
      841 ggtgcagtta gaaactttag ccccactgac tattaccatt cagaaattcc aaacacaaga
      901 ccacatgaaa ttctggaaaa accttctcct ccacagccac cacctcctcc ttcagtacca
      961 cagactgtga ttccaaagaa gactggctca cctgaaatta aactaaaaat aaccaaaact
     1021 atccagaatg gcagggaatt gtttgagtct tccctttgtg gagacctttt aaatgaagta
     1081 caggcaagtg agcacacaaa gtcaaagcat gaaagcagaa aagaaaagag gaaaaaaagc
     1141 aacaagcacg attcatctag atctgaagag cgcaagtcac acaaaatccc cagattagaa
     1201 ccagaggaac aaaatagacc aaatgagagg gttgacactg tatcagaaaa accaagagaa
     1261 gatccagtac tgaaagagga gctcccggtt cagccgatgt taccttctgt tccaacaaca
     1321 gaagtgtctg ctggtgttaa gttccaggtt ggcgatcttg tttggtctaa ggtgggaacc
     1381 tatccttggt ggccttgtat ggtttcaagt gatccccaac tcgaggttca caccaaaatt
     1441 aacacaagag gtgcccggga atatcacgtc caatttttta gcaaccagcc agagagggcg
     1501 tgggttcacg aaaagcgggt ccgagagtac aaaggtcaca aacagtatga agaactactg
     1561 gccgaggcga ccagacaagc cagcaatcac tctgagaaac agaagattcg gaaaccccgg
     1621 cctcagagag aacgtgctca gtgggatatc ggcattgccc acgcagagaa agcattgaaa
     1681 atgacccggg aggaaagaat tgaacagtat acttttatct acattgataa acagcctgag
     1741 gaggctttat cccaagcaaa aaagaatgtt gcctccaagg ctgaagttaa aaaaacccga
     1801 aggccaagat cagtgctgaa tactcagcca gaacagacca gtgcaggcga ggcggcctcc
     1861 tcactatcag gtactgaaat tcggagacac agccagaggc ggcacactag cgtggaagag
     1921 gacgaaccac ctcccgttaa agtagcctgg aaaacggcag ctgcgaggaa atccttacca
     1981 gcttccatca caatgcacaa agggagcctg gatttgcaga agtgtaacat gtctccagtt
     2041 gtgaaaattg aacaagtgtt tgctcttcag aatgctacag gagatgggaa atttatcgat
     2101 cagtttgttt attcaacgaa gggaattggt aacaaaacag aaataagtgt caggggacaa
     2161 gacagactta taatttctac accaaaccag aggaatgaaa aggcaactca gaatatgtca
     2221 tctcctgaaa cagcatctgg tcctgcaggc tcagtagaaa agaagcaaca gagaagatcc
     2281 attagaaccc gttccgaatc agagaaatcc actgaggtcg tgccaaagaa gaagatcaaa
     2341 aaggagcagg ttgaaacagt tcctcaggct acagtgaaga ctggattaca aaaagggtcg
     2401 gcggaccggg gagtgcaggg ctctgtcaga ttcagtgaca gctccgtctc cgcagcgagt
     2461 gaggaaactg tggactgaga ttcctgtaca atttcatccc agaaactcca gacttgtagt
     2521 ctccatgcaa gatttctttg tcggcggctc gataaacagt ttctttgttt tcaattttga
     2581 ttttgccaat catcattatg ggcattttcc tgcctgattt ctttttcaag actctgaaca
     2641 attgctttaa cattcaaatg attttttttt tttcttttct tttttttttt tttttttttg
     2701 tctgagctgg atgggtacag cttaaatcat gggtccagcc taaaaaccac cgtttaactt
     2761 acactgatca atttcaacat ggactgtttt tgggtttttt tgtttttgtt tttttttaaa
     2821 ataaagcgtc attaatgcac atctgcaggg ttttgccaaa cagcccaaac tgtatacatt
     2881 acaatcatta aaagctctta ttttttttaa cattagtgcc gttatcatgg agaacagcgt
     2941 ggtggctgcc tttggcagcc tgtccttttt ctagcatttt cagaaactca tcggaaatgg
     3001 cggtacctgt gtttcccttc gaaagcctct cagtacagca ctcctgttcc tctgttaaaa
     3061 ctccttgtta atccagtgat cttttaggcc aaggaaatat tttgtggtgg tgttctgggt
     3121 ccatacacca gcaatgaagg agatagattt gtgtacttgt gttttttaat cagcgttaac
     3181 acgggcaggc accctcattt gtagatgtaa ggaaacattc agtgaaaacc ttgtaggatg
     3241 ggatgtgata acgaggttcc agtcacctga gcagtctaac gaggtccaca tcctcctgca
     3301 cagactgtgc cgcacaccaa gtgctgttcc cgctcagcct ttgtggatct tcatggcctc
     3361 gggagacctg tttctccatg gtctcttctg gactgcacac ttccaccata gcttgctggg
     3421 ctgatctaga tgtctgtttg ttgtatggaa attttggggg aaaaaaaaaa atctaaaaca
     3481 caaactgtgg gttgaaatat taaccgtctc cttggttcct tggtattcac cgtgcctgat
     3541 ctgcacattt catcgtggct gtttctgtat agcctatact gcattagccc aagagattgt
     3601 tgctttgtaa ctttttgcac tattgttttg gctggatttg tattacacac cgttttaaaa
     3661 aaaaaaattc cacactattc tctgcctttt tttttttttt ttttcatatt tattccttcc
     3721 ctcaccaagt ccacacagag gcctctcatc cagctcttcg tgatttggct gcatttgaac
     3781 attgtctgtt tacagccctc agcactgtgc ctcctagatg gcatgacgta tgtagctgtg
     3841 ctgcaacact tgtaatggtc acagtaaacg cccttcaccc aggaagtctc agatgaacaa
     3901 ttgtggacat ccaggattta tctggggggc aataatcaac tgaattgcaa aattcggggg
     3961 aaaatggcac tatccgtgta cgaatcgaat acaaatcaaa gatttgtcac atccctaata
     4021 aaaacaagat ggaggtgtct ctgcgaccat atttgtaagc ta
//
LOCUS       XM_032618278            6563 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDHD domain containing 2 (DDHD2),
            transcript variant X1, mRNA.
ACCESSION   XM_032618278
VERSION     XM_032618278.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6563
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6563
                     /gene="DDHD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, 12
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746682"
     CDS             1281..3428
                     /gene="DDHD2"
                     /codon_start=1
                     /product="phospholipase DDHD2"
                     /protein_id="XP_032474169.1"
                     /db_xref="GeneID:116746682"
                     /translation="MSSVESHEEQLSQSDPSPSPNSCSSFELIDMDVGSLYEPVSPHW
                     FYCKIIDSKETWIPFNSQDSQQLEEAYGSGKDCDRRVVPTDGGRYDVHLGERMRYAVY
                     WDELASEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTLDEWKKKLESPNREV
                     IILHNPKLMVHYQPVAGSDEWGSTPTEQGRPRTVKRGVENISVDVHCGEPLQIDHLVF
                     VVHGIGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPL
                     HSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASELNRLYVLF
                     LQRNPDFKGGVSIAGHSLGSLILFDILTNQKDSLGDVDSKKDLPSIFMDQGDTPTLEE
                     DLKKLQLSEFFSVFEKEKVDKEALALCTDKDLQEMGIPLGPRKKILNYLRTRKNSMGI
                     NRPTLQSPAGANMSNIPKESEFCSSTNGTGNGEHLDVGIGQVPVKYPRLIYKPEIFFA
                     FGSPIGMFLTVRGLKRIDPNYKFPTCKGFFNIYHPFDPVAYRIEPMVVPGVEFEPMLI
                     PHHKGRKRMHLELREGLTRMSMDLKNNLLGSLRMAWKSFTRAPYPALQASETAEETEA
                     EPESSSEKPSDVSTEENLVAVKQEAPPIHVGMLNGGQRIDYVLQEKPIESFNEYLFAL
                     QSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ"
     misc_feature    1407..1616
                     /gene="DDHD2"
                     /note="WWE domain; Region: WWE; pfam02825"
                     /db_xref="CDD:460715"
     misc_feature    2415..2621
                     /gene="DDHD2"
                     /note="SAM (Sterile alpha motif); Region: SAM_superfamily;
                     cl15755"
                     /db_xref="CDD:472832"
     misc_feature    2775..3389
                     /gene="DDHD2"
                     /note="DDHD domain; Region: DDHD; pfam02862"
                     /db_xref="CDD:460725"
ORIGIN      
        1 tttggctaaa gtttttccac agacaaaagg cgggctgagg acatggggtg aggggcaggg
       61 accgcagggt cctgctccat ttcatctgca aagaacagaa gctattcagg tgttataaat
      121 ttgaggagaa ggtataagta aacttgtggg taattgtgtg tggctcttaa actgtaagag
      181 aattaatctg ttatttaaaa atccctttta gtttcctttt tctcagcttt tgaagaaata
      241 acaagactga aaaacattcc ctgaaccctt gccctataat ctagttagaa aataggaaag
      301 tattttattg cgtgcccgaa ggaattgaag tcttccagaa aactaaatag gagagctggc
      361 agggctacta cttgggaaat tcttttaacc tcttgacctc tgttatgtca tcttgctgga
      421 caaaaatatc tcatctccaa ccctcttgcg gcttttgaat cctgccaagc tcagctctac
      481 atcttttaaa gatatctttt tggcagcttc taaatcccaa taaacgcaaa ggagaggggc
      541 aaagacccag agacgatctt ttgttccctt gcaaatgcca atggtatctg ttctcagcac
      601 ccagaagtgg aggtctgggt agacgcaact accgccagcg ccctgtccta cttttcacta
      661 agggcatggc atcccggcgt ccctgcacca tcccggccca tgagcagggt tagccagggt
      721 accaccgggt cagaggtctg ttttcccatc tattaagtga ggaggctggg tcatcttgaa
      781 gaaccttgct ttcactgcaa tttgaaacgc tccccaccta taacgtctca ttcctcatcc
      841 ctgccttcta aatacctgag gccttgcacc cagaccccgt gcgcgggtac cgagcggggg
      901 gcgcgccgcc ggcaacaccc gcgtgcccag cgctccgacc tccagcccgc tcggaggagc
      961 acatctcgcg cgattccctc cacctctcgc gacacttccc gctagcgccc ctgcgggcct
     1021 ccacgccccg cccgtttcct ccacgcagcg gtccccgtca cctcaccttt gctcttggca
     1081 acctggcccg ctgctcgcca gctgggagcg cggcggagcc ctgtgttggg cgcgagcccg
     1141 ttagggccgc aagctccgcc ctgctctgct ccgctccgcc cctcctgagc ttgcggggaa
     1201 ggcctccgct ggggatatgt cgcagcccac tcagcgaagg caggagaact tgaaaggctg
     1261 cggggctgca agagaaagaa atgtcatcag tggaatcaca cgaggaacaa ttgtcccagt
     1321 cagatccatc cccgtcacca aactcatgta gttcctttga gctaatagac atggatgttg
     1381 gcagtttgta cgaacctgtt tctcctcatt ggttttattg taagataata gattctaagg
     1441 agacatggat tcctttcaac tctcaggatt cacagcagct ggaagaggca tacggctctg
     1501 gaaaagactg tgatagaaga gttgtgccca ctgatggggg cagatacgat gttcatttgg
     1561 gggagaggat gcggtacgcc gtatactggg atgagctagc atcggaagtg aggcgctgta
     1621 cctggtttta caagggagac aaagataata agtatgttcc atactcggag agcttcagcc
     1681 aagtgttaga ggaaacttac atgctggctg taacgctgga tgaatggaag aagaaactgg
     1741 agtctcccaa cagagaagtt attatattgc acaatccaaa gcttatggta cattaccagc
     1801 cagtcgcggg gtctgatgaa tggggttcaa cacccactga gcagggccga cctcgaacag
     1861 tgaagagagg ggttgagaac atctctgttg acgttcattg tggggaacct ttacagatag
     1921 atcacttggt ttttgtagtc cacgggatcg gaccagcctg tgatctccgc tttcgaagca
     1981 ttgtacagtg tgttaatgat tttcgcagtg tttctttgaa cctgctacag acgcatttta
     2041 agaaagccca agaaaatcag cagattggga gggtagaatt tctcccagtc aactggcaca
     2101 gtcctttgca ttccactggt gtggatgtag atctgcagcg aataactctg cccagcatta
     2161 accgcctaag gcacttcacc aatgatacaa ttctggatgt cttcttctac aacagcccca
     2221 cctactgtca gactattgtg gacacagttg cttctgaact gaaccgatta tatgtacttt
     2281 ttctgcagag gaaccctgat ttcaaagggg gcgtatccat cgctggtcat agtttaggtt
     2341 cacttatatt gttcgatatc ctaacaaatc agaaagattc tttgggggat gttgacagta
     2401 aaaaggattt gccaagtatt ttcatggatc aaggagacac accgacactg gaggaagatt
     2461 tgaagaaact tcaactctct gaattcttta gtgtctttga gaaggagaaa gtagataagg
     2521 aagctctggc tttatgtaca gacaaagatc ttcaggaaat gggaattccc ttaggaccaa
     2581 gaaagaagat actaaactac ttaaggacca gaaaaaattc aatgggtatt aatagaccaa
     2641 ccctgcaatc acctgcaggg gcgaatatgt ctaacatccc caaagaatcg gagttctgca
     2701 gtagtactaa tggtactgga aatggtgaac atctggatgt tggcattggg caggtgcctg
     2761 taaaataccc ccggctcatc tataaaccag aaatattctt tgcctttgga tctcccattg
     2821 gaatgttcct tactgtccga ggcctaaaaa gaattgaccc caactacaaa tttccaacat
     2881 gcaaaggttt cttcaatatt tatcaccctt ttgatcctgt ggcctatagg attgaaccaa
     2941 tggtggtccc aggagtagaa tttgagccaa tgctgatccc gcatcataaa ggcaggaagc
     3001 ggatgcactt agaactgaga gagggcttga ccaggatgag catggacctt aagaacaact
     3061 tgctaggttc gctgcggatg gcctggaagt cttttaccag agctccatac cctgccttac
     3121 aagcttcaga aactgcagaa gaaactgaag cagaacctga atcaagttca gagaagccta
     3181 gtgatgttag cacagaagag aaccttgtag cagttaaaca agaagctccc cccatccatg
     3241 tgggaatgct gaatggaggc cagcgcatcg actatgtgct acaggagaag cccattgaaa
     3301 gttttaatga atatttattt gctttacaaa gtcatctatg ctactgggag tctgaagata
     3361 cagtactgct ggtcctcaaa gaaatctacc aaacccaggg tatcttcctt gatcagcctt
     3421 tacagtaaaa atgaaccacc tatggctgct taatgtaagt ttttaaatgt catgtatgca
     3481 gcatattaca tgtgacgagg aactgtggag ccgcagctct tcctacatat taacatgtga
     3541 tgaggaactg tggagcctca gctctttata aatatacttt ttgttgcctg tcaccaagat
     3601 ccaggttatt actcattttt agagggactc tgcttaaaat tcatgggata aaagcacagt
     3661 aggccactta gagaaaggtt agtgtatgtt tgttttgtta gcgacttggt ccaataatac
     3721 ttgccatttt taggatctaa actcagaatc ttaatagttg accatctgag agttaccagg
     3781 gcaacagtta cagctttaag tacaaacagc tcatcctggg atttatgtca ctcagccctt
     3841 tagatgtgta gttaggaagt ttgtgtggca gactctggcg ttctctctgg tcgccttcca
     3901 gcgtgatgac ctcttcaact ccctccctca gatgggcact gaggggtcct tccccagaac
     3961 acctgcctct ttgttgctgc agttttttcc tctcctcagc ggcctcattt cctgcaggtt
     4021 gccagccttg ctcaccactg gggtcttagg aagataatct tcctgtctgg aagtgagtgg
     4081 aaaagcaaag gggagaccct gttacttttt accactggct tcagagaaac acttgccatt
     4141 cttgcttcat agctgggagt ggtttgcatc tttaatactt tgatgatggt atttaggtac
     4201 catacttttt ttttttttta acatctttat tggagtctaa ttgctttaca atggtgtgtt
     4261 agtttctgct ttataacaaa gtgaatcagt tatacatata ggtatgttcc catatctcct
     4321 ccctcttgcg tctccctccc accctctcta tcccacccct ctaggtggtc acaaagcacc
     4381 gagctgatct ccctgtgcta tgcggctgct tcccactagc tatctatttt acacttggta
     4441 gtatatataa gtctatgcca ctctctcact tcatcccagc ttacccttcc ccctccccat
     4501 atcctcaagt ccatgctcta gtaggtctgc gtctttattc ccgtcttacc cctaggtact
     4561 tcatgacctt tattttttct ttttcttaga ttccatatat atgtgttagc atacggtatt
     4621 tgtttttctc ttaggtacca cactttattg tttattactt gagatggtat aaagtctgag
     4681 tttttgtttt gggttgggta taaatttttc taagaaatta ttgcttatct ttagaaaata
     4741 ttctaatctg gaagtggact cctgagattc agaaggcatt ttggggtctg ctcatcgctc
     4801 atgggtgttc tctgcatttg aaggccaagt ctaagtgaat gagggagact ggtggccatc
     4861 agattctctt gagccagctt tatttcctac acgtactgta tgaagaaata ctaaaatctg
     4921 taaatactgt ttactctctc tacagctgac tgacagattt attgctagga atcactgatg
     4981 cttttcattg tttccacagc tgtttgagct gctctcggtg gacagtctaa agtggacagt
     5041 ttagttccca tcaggtgcat ctttataaag caaagatgtt atatatccta gacctgccct
     5101 tttatatcat atcatacttc aaactgggag actctagaca aagtccgact tagttgttag
     5161 ttcttgaggg tttaaaagct gacagacctg aaattacaca gctttgactg cttattaagt
     5221 gatgaatgaa atgtctcagt ggtgcgttga tggtgaaata gaatttgtgt aagccatctg
     5281 ccacagctgc ttgggtgaag ggagtactgc agagtgtcct cttcaagcac ataaacagcg
     5341 ttgcctcctt aggtacccgt agtgcaggtc gctatggaac aggctcccgg cacaggcagt
     5401 gttggtagat ctggctaggg ggaagtgttc cttattctga aagacaaacc tgcgtctatg
     5461 gggccaggaa cagctggtgc agagtcagtg tcagagcgtg caagtgagat gcaccttgaa
     5521 gaagacaagt gaatggagac taattgtttc caaggcatct tgctcaccgc tgtgctgtag
     5581 gtattttctt tctcacaggt ctcagtttgt gattgtcttt gcagttctct ttgtgacagt
     5641 ccttcacact cctctcaggt tcctacaggc cctggtggac agagcggtgt agacaggcaa
     5701 gctgtgtttc gctttttata tcggtttctt gtaagtaaat atatgatggt atccaaagcc
     5761 ctggaattta acattcacat aagccatctc tttgacaaca gagggaaggt taattaccgt
     5821 caccctagag atacggttgg ggtaaaggtg agagcctggc cttaccttgt ccatctgctt
     5881 acacactaat gctaagccac taagaagcct catctatatg aaatacttta ttttctttac
     5941 tacataaact ctgagtgtga agtaagggtt actgagaatt cagtagcatt cagtacatat
     6001 taaaggggaa gctttcatca agttgttgtc ttcaaattta aatttggtct tcctattaac
     6061 agaataacta aaatttaaga gtaaaccaaa ggaccagcaa gagtgagtcc ctgtaaccag
     6121 agatgaacag gatcaacctg gatggctaga taaaccagtt tgtactaaga agtgtttcct
     6181 tcctggtggt gaggggcagg tgactggaaa agagctttat atcctgtttg tccccctgtg
     6241 ctggtttcac ggatgtgtgt tccgcagggt agtgagcttg cctcacgttc cctgtttggt
     6301 tgtgtgttat ttgcactgct tcagcagcgg cactgcagtc tcttggccaa gccccttttt
     6361 aaacgctgga ggcagatcat cttctccgcg ttcccagctg cacaactgct gtggctcacc
     6421 tccgcagaag cgatggtttg cacggaaaga ttagtagcac cgattagctt tctgatagtt
     6481 tgcactttct gaaatgtttt ttatgtgatt atatttaaaa ctttagtaaa tactgaaata
     6541 aaaccatatt gaccagttgc cta
//
LOCUS       XM_032618279            5285 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DDHD domain containing 2 (DDHD2),
            transcript variant X2, mRNA.
ACCESSION   XM_032618279
VERSION     XM_032618279.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5285
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5285
                     /gene="DDHD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 5 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746682"
     CDS             1283..3430
                     /gene="DDHD2"
                     /codon_start=1
                     /product="phospholipase DDHD2"
                     /protein_id="XP_032474170.1"
                     /db_xref="GeneID:116746682"
                     /translation="MSSVESHEEQLSQSDPSPSPNSCSSFELIDMDVGSLYEPVSPHW
                     FYCKIIDSKETWIPFNSQDSQQLEEAYGSGKDCDRRVVPTDGGRYDVHLGERMRYAVY
                     WDELASEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTLDEWKKKLESPNREV
                     IILHNPKLMVHYQPVAGSDEWGSTPTEQGRPRTVKRGVENISVDVHCGEPLQIDHLVF
                     VVHGIGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPL
                     HSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASELNRLYVLF
                     LQRNPDFKGGVSIAGHSLGSLILFDILTNQKDSLGDVDSKKDLPSIFMDQGDTPTLEE
                     DLKKLQLSEFFSVFEKEKVDKEALALCTDKDLQEMGIPLGPRKKILNYLRTRKNSMGI
                     NRPTLQSPAGANMSNIPKESEFCSSTNGTGNGEHLDVGIGQVPVKYPRLIYKPEIFFA
                     FGSPIGMFLTVRGLKRIDPNYKFPTCKGFFNIYHPFDPVAYRIEPMVVPGVEFEPMLI
                     PHHKGRKRMHLELREGLTRMSMDLKNNLLGSLRMAWKSFTRAPYPALQASETAEETEA
                     EPESSSEKPSDVSTEENLVAVKQEAPPIHVGMLNGGQRIDYVLQEKPIESFNEYLFAL
                     QSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ"
     misc_feature    1409..1618
                     /gene="DDHD2"
                     /note="WWE domain; Region: WWE; pfam02825"
                     /db_xref="CDD:460715"
     misc_feature    2417..2623
                     /gene="DDHD2"
                     /note="SAM (Sterile alpha motif); Region: SAM_superfamily;
                     cl15755"
                     /db_xref="CDD:472832"
     misc_feature    2777..3391
                     /gene="DDHD2"
                     /note="DDHD domain; Region: DDHD; pfam02862"
                     /db_xref="CDD:460725"
ORIGIN      
        1 tctttggcta aagtttttcc acagacaaaa ggcgggctga ggacatgggg tgaggggcag
       61 ggaccgcagg gtcctgctcc atttcatctg caaagaacag aagctattca ggtgttataa
      121 atttgaggag aaggtataag taaacttgtg ggtaattgtg tgtggctctt aaactgtaag
      181 agaattaatc tgttatttaa aaatcccttt tagtttcctt tttctcagct tttgaagaaa
      241 taacaagact gaaaaacatt ccctgaaccc ttgccctata atctagttag aaaataggaa
      301 agtattttat tgcgtgcccg aaggaattga agtcttccag aaaactaaat aggagagctg
      361 gcagggctac tacttgggaa attcttttaa cctcttgacc tctgttatgt catcttgctg
      421 gacaaaaata tctcatctcc aaccctcttg cggcttttga atcctgccaa gctcagctct
      481 acatctttta aagatatctt tttggcagct tctaaatccc aataaacgca aaggagaggg
      541 gcaaagaccc agagacgatc ttttgttccc ttgcaaatgc caatggtatc tgttctcagc
      601 acccagaagt ggaggtctgg gtagacgcaa ctaccgccag cgccctgtcc tacttttcac
      661 taagggcatg gcatcccggc gtccctgcac catcccggcc catgagcagg gttagccagg
      721 gtaccaccgg gtcagaggtc tgttttccca tctattaagt gaggaggctg ggtcatcttg
      781 aagaaccttg ctttcactgc aatttgaaac gctccccacc tataacgtct cattcctcat
      841 ccctgccttc taaatacctg aggccttgca cccagacccc gtgcgcgggt accgagcggg
      901 gggcgcgccg ccggcaacac ccgcgtgccc agcgctccga cctccagccc gctcggagga
      961 gcacatctcg cgcgattccc tccacctctc gcgacacttc ccgctagcgc ccctgcgggc
     1021 ctccacgccc cgcccgtttc ctccacgcag cggtccccgt cacctcacct ttgctcttgg
     1081 caacctggcc cgctgctcgc cagctgggag cgcggcggag ccctgtgttg ggcgcgagcc
     1141 cgttagggcc gcaagctccg ccctgctctg ctccgctccg cccctcctga gcttgcgggg
     1201 aaggcctccg ctggggatat gtcgcagccc actcagcgaa ggcaggagaa cttgaaaggc
     1261 tgcggggctg caagagaaag aaatgtcatc agtggaatca cacgaggaac aattgtccca
     1321 gtcagatcca tccccgtcac caaactcatg tagttccttt gagctaatag acatggatgt
     1381 tggcagtttg tacgaacctg tttctcctca ttggttttat tgtaagataa tagattctaa
     1441 ggagacatgg attcctttca actctcagga ttcacagcag ctggaagagg catacggctc
     1501 tggaaaagac tgtgatagaa gagttgtgcc cactgatggg ggcagatacg atgttcattt
     1561 gggggagagg atgcggtacg ccgtatactg ggatgagcta gcatcggaag tgaggcgctg
     1621 tacctggttt tacaagggag acaaagataa taagtatgtt ccatactcgg agagcttcag
     1681 ccaagtgtta gaggaaactt acatgctggc tgtaacgctg gatgaatgga agaagaaact
     1741 ggagtctccc aacagagaag ttattatatt gcacaatcca aagcttatgg tacattacca
     1801 gccagtcgcg gggtctgatg aatggggttc aacacccact gagcagggcc gacctcgaac
     1861 agtgaagaga ggggttgaga acatctctgt tgacgttcat tgtggggaac ctttacagat
     1921 agatcacttg gtttttgtag tccacgggat cggaccagcc tgtgatctcc gctttcgaag
     1981 cattgtacag tgtgttaatg attttcgcag tgtttctttg aacctgctac agacgcattt
     2041 taagaaagcc caagaaaatc agcagattgg gagggtagaa tttctcccag tcaactggca
     2101 cagtcctttg cattccactg gtgtggatgt agatctgcag cgaataactc tgcccagcat
     2161 taaccgccta aggcacttca ccaatgatac aattctggat gtcttcttct acaacagccc
     2221 cacctactgt cagactattg tggacacagt tgcttctgaa ctgaaccgat tatatgtact
     2281 ttttctgcag aggaaccctg atttcaaagg gggcgtatcc atcgctggtc atagtttagg
     2341 ttcacttata ttgttcgata tcctaacaaa tcagaaagat tctttggggg atgttgacag
     2401 taaaaaggat ttgccaagta ttttcatgga tcaaggagac acaccgacac tggaggaaga
     2461 tttgaagaaa cttcaactct ctgaattctt tagtgtcttt gagaaggaga aagtagataa
     2521 ggaagctctg gctttatgta cagacaaaga tcttcaggaa atgggaattc ccttaggacc
     2581 aagaaagaag atactaaact acttaaggac cagaaaaaat tcaatgggta ttaatagacc
     2641 aaccctgcaa tcacctgcag gggcgaatat gtctaacatc cccaaagaat cggagttctg
     2701 cagtagtact aatggtactg gaaatggtga acatctggat gttggcattg ggcaggtgcc
     2761 tgtaaaatac ccccggctca tctataaacc agaaatattc tttgcctttg gatctcccat
     2821 tggaatgttc cttactgtcc gaggcctaaa aagaattgac cccaactaca aatttccaac
     2881 atgcaaaggt ttcttcaata tttatcaccc ttttgatcct gtggcctata ggattgaacc
     2941 aatggtggtc ccaggagtag aatttgagcc aatgctgatc ccgcatcata aaggcaggaa
     3001 gcggatgcac ttagaactga gagagggctt gaccaggatg agcatggacc ttaagaacaa
     3061 cttgctaggt tcgctgcgga tggcctggaa gtcttttacc agagctccat accctgcctt
     3121 acaagcttca gaaactgcag aagaaactga agcagaacct gaatcaagtt cagagaagcc
     3181 tagtgatgtt agcacagaag agaaccttgt agcagttaaa caagaagctc cccccatcca
     3241 tgtgggaatg ctgaatggag gccagcgcat cgactatgtg ctacaggaga agcccattga
     3301 aagttttaat gaatatttat ttgctttaca aagtcatcta tgctactggg agtctgaaga
     3361 tacagtactg ctggtcctca aagaaatcta ccaaacccag ggtatcttcc ttgatcagcc
     3421 tttacagtaa aaatgaacca cctatggctg cttaataaaa tattctaatc tggaagtgga
     3481 ctcctgagat tcagaaggca ttttggggtc tgctcatcgc tcatgggtgt tctctgcatt
     3541 tgaaggccaa gtctaagtga atgagggaga ctggtggcca tcagattctc ttgagccagc
     3601 tttatttcct acacgtactg tatgaagaaa tactaaaatc tgtaaatact gtttactctc
     3661 tctacagctg actgacagat ttattgctag gaatcactga tgcttttcat tgtttccaca
     3721 gctgtttgag ctgctctcgg tggacagtct aaagtggaca gtttagttcc catcaggtgc
     3781 atctttataa agcaaagatg ttatatatcc tagacctgcc cttttatatc atatcatact
     3841 tcaaactggg agactctaga caaagtccga cttagttgtt agttcttgag ggtttaaaag
     3901 ctgacagacc tgaaattaca cagctttgac tgcttattaa gtgatgaatg aaatgtctca
     3961 gtggtgcgtt gatggtgaaa tagaatttgt gtaagccatc tgccacagct gcttgggtga
     4021 agggagtact gcagagtgtc ctcttcaagc acataaacag cgttgcctcc ttaggtaccc
     4081 gtagtgcagg tcgctatgga acaggctccc ggcacaggca gtgttggtag atctggctag
     4141 ggggaagtgt tccttattct gaaagacaaa cctgcgtcta tggggccagg aacagctggt
     4201 gcagagtcag tgtcagagcg tgcaagtgag atgcaccttg aagaagacaa gtgaatggag
     4261 actaattgtt tccaaggcat cttgctcacc gctgtgctgt aggtattttc tttctcacag
     4321 gtctcagttt gtgattgtct ttgcagttct ctttgtgaca gtccttcaca ctcctctcag
     4381 gttcctacag gccctggtgg acagagcggt gtagacaggc aagctgtgtt tcgcttttta
     4441 tatcggtttc ttgtaagtaa atatatgatg gtatccaaag ccctggaatt taacattcac
     4501 ataagccatc tctttgacaa cagagggaag gttaattacc gtcaccctag agatacggtt
     4561 ggggtaaagg tgagagcctg gccttacctt gtccatctgc ttacacacta atgctaagcc
     4621 actaagaagc ctcatctata tgaaatactt tattttcttt actacataaa ctctgagtgt
     4681 gaagtaaggg ttactgagaa ttcagtagca ttcagtacat attaaagggg aagctttcat
     4741 caagttgttg tcttcaaatt taaatttggt cttcctatta acagaataac taaaatttaa
     4801 gagtaaacca aaggaccagc aagagtgagt ccctgtaacc agagatgaac aggatcaacc
     4861 tggatggcta gataaaccag tttgtactaa gaagtgtttc cttcctggtg gtgaggggca
     4921 ggtgactgga aaagagcttt atatcctgtt tgtccccctg tgctggtttc acggatgtgt
     4981 gttccgcagg gtagtgagct tgcctcacgt tccctgtttg gttgtgtgtt atttgcactg
     5041 cttcagcagc ggcactgcag tctcttggcc aagccccttt ttaaacgctg gaggcagatc
     5101 atcttctccg cgttcccagc tgcacaactg ctgtggctca cctccgcaga agcgatggtt
     5161 tgcacggaaa gattagtagc accgattagc tttctgatag tttgcacttt ctgaaatgtt
     5221 ttttatgtga ttatatttaa aactttagta aatactgaaa taaaaccata ttgaccagtt
     5281 gccta
//
LOCUS       XM_032618281            2324 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BAG cochaperone 4 (BAG4), transcript
            variant X1, mRNA.
ACCESSION   XM_032618281
VERSION     XM_032618281.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2324
                     /gene="BAG4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746683"
     CDS             35..1414
                     /gene="BAG4"
                     /codon_start=1
                     /product="BAG family molecular chaperone regulator 4
                     isoform X1"
                     /protein_id="XP_032474172.1"
                     /db_xref="GeneID:116746683"
                     /translation="MSALRRSGYGPSDGPSYGRYYGPGGGDVPVHPPPPIYPPRPEPP
                     QPPISWRVRGGGPAETTWPGEGGGGDGYYPSGSAWSEPGRAGGGHQEQPPYPSYNSNY
                     WNSPARPRAPYPSTYPVRPEMQGQSLNSYTNGAYGPPYPTGPGTNTAPYPGAYYTSGY
                     AQTNYSTEVPSTYRSPGNSPTPVSPWMYPQQDCQTEAAPLRGQVPGYPASQNPGMSVP
                     HYPYGDGNRSVPQPGPTVRSQGDSWAPPGAYGMGARYPWPSAAPSAPPGSLYVSESAS
                     SWPSSGSPRPPPSPPAPQPKDSSYPYSQSDQGMNRHNFPCSVHVHQYESSGTVNNDNS
                     ELLDSQVQYTAEPQLYGNASNEHPSNQDQSHNLPEECLSSDEGTPPSIKKIIHVLEKV
                     QYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAI
                     LEKLEKKGL"
     misc_feature    <347..832
                     /gene="BAG4"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1175..1408
                     /gene="BAG4"
                     /note="BAG domains, present in regulator of Hsp70
                     proteins; Region: BAG; smart00264"
                     /db_xref="CDD:214591"
ORIGIN      
        1 ggggggcggg aagcgcccgg gggcagtgga gccgatgtcg gccttgaggc gctcaggcta
       61 cggccccagt gacggtccgt cttatgggcg ctactacggg cctgggggtg gagatgtacc
      121 cgtgcaccca cctccgccca tatatcctcc ccgccccgaa cccccccagc ctcccatttc
      181 ctggcgagtg cgcgggggcg gcccggctga gaccacctgg ccgggagaag gcggaggagg
      241 cgatggctac tatccctctg gaagcgcctg gtcggagccg ggtcgggctg gaggaggcca
      301 ccaggagcag ccaccatatc ctagctacaa ttccaactat tggaattctc ctgcccgacc
      361 tcgggctcct tacccaagta cttatcctgt aagaccggaa atgcaaggcc agagtttgaa
      421 ttcttataca aatggagcat atggcccacc ataccccact ggccctggga caaatactgc
      481 cccataccca ggggcttatt acacatctgg gtatgctcag accaattact ccacagaggt
      541 tccaagcact taccgttcac ctggcaacag cccaacccca gtctctcctt ggatgtatcc
      601 ccagcaggac tgccagactg aagcagcccc tcttaggggg caggttccag gatatcctgc
      661 ttcacagaac cctggaatga gcgtgcccca ttatccttat ggggatggta atcgtagtgt
      721 tccacaacca ggaccaactg tacgatccca gggggactcc tgggctcctc cgggtgctta
      781 tggcatggga gcccgttacc cctggccttc agctgccccc tcagcaccac ctgggagtct
      841 ctacgtgagt gagagcgctt catcatggcc gagcagtggc tctcctcggc cacctccttc
      901 ccccccagcc ccacagccca aggattcctc atacccctat agccaatcag atcaaggcat
      961 gaaccggcac aactttcctt gcagtgtcca cgtccatcag tacgagtcct cgggaacagt
     1021 gaacaatgat aattcagagc tcttggattc ccaagtccag tatactgctg agcctcagct
     1081 gtatggtaat gcctccaacg agcatcccag caatcaagat cagagtcata atcttcctga
     1141 agagtgttta tcttcagatg aagggactcc cccaagtatt aagaaaatca tacatgtgct
     1201 ggagaaggtc cagtatcttg agcaagaagt agaagagttc gtaggaaaaa agacagacaa
     1261 agcatactgg cttttggaag aaatgctaac caaggaactt ttggaactgg attcagttga
     1321 aactgggggc caggactctg tccggcaggc caggaaagag gctgtttgta aaatccaggc
     1381 catactggaa aaattggaaa aaaaaggatt atgaagggat ttagaacaaa ggggaagcct
     1441 gttactaact tgaccaaaga actcttgatt ttggttaatt accctctttt tgaaatgcct
     1501 gttgaggaga agaagcaata cattccaact ttcctttgat ataaaacttg aaaaactggt
     1561 aaaggacttg gaagaacagt tgggttatga gttgttttca gttttcagac caatgaatgt
     1621 aataggaagc tatggagttt atcagtattg ccaagtagac tcacccctta agaaatttat
     1681 gggtatctgc aagctgcttc ttatcagcag gagggaaatc caccttatgt aacaggctta
     1741 tcagaaacct accggataag actggatgtt gtctgagaca aacaggctct gtttttttaa
     1801 acatctggat tacttgtcac atttttgtac attgtgactg ctttcaccgt acactttgtg
     1861 tgtaaattat agcttggact ttagccttct tggacctctg ttttgttttg ttacttgtag
     1921 ctcacagata tagtgttatt ctctacttct tggtacattt tgtagtaata tgtttgatat
     1981 aattactcaa gagactatac tgacagccag atagtgtggc agttctggat gaatttgtat
     2041 cttttcacca cttgaatata ttgcactgtg tagtgagttc ctgaggtaga ttgtctcctt
     2101 ttttgtatag atcattaggt tagagtttta ccacttctat ttttcgtgtt actattggaa
     2161 ggttaatttg gaaatggcat gggtatagga atgaaaatgg ggctatttcc ttttttgctg
     2221 tctaaatcgt atttggatga agatccactt taaaatttcc tttcttcccc cttaattatc
     2281 tttttactac agctgcttgc atatggagca gtgtgatgaa caca
//
LOCUS       XM_032618282            1762 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BAG cochaperone 4 (BAG4), transcript
            variant X2, mRNA.
ACCESSION   XM_032618282
VERSION     XM_032618282.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1762
                     /gene="BAG4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746683"
     CDS             22..1293
                     /gene="BAG4"
                     /codon_start=1
                     /product="BAG family molecular chaperone regulator 4
                     isoform X2"
                     /protein_id="XP_032474173.1"
                     /db_xref="GeneID:116746683"
                     /translation="MSALRRSGYGPSDGPSYGRYYGPGGGDVPVHPPPPIYPPRPEPP
                     QPPISWRVRGGGPAETTWPGEGGGGDGYYPSGSAWSEPGRAGGGHQSLNSYTNGAYGP
                     PYPTGPGTNTAPYPGAYYTSGYAQTNYSTEVPSTYRSPGNSPTPVSPWMYPQQDCQTE
                     AAPLRGQVPGYPASQNPGMSVPHYPYGDGNRSVPQPGPTVRSQGDSWAPPGAYGMGAR
                     YPWPSAAPSAPPGSLYVSESASSWPSSGSPRPPPSPPAPQPKDSSYPYSQSDQGMNRH
                     NFPCSVHVHQYESSGTVNNDNSELLDSQVQYTAEPQLYGNASNEHPSNQDQSHNLPEE
                     CLSSDEGTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSV
                     ETGGQDSVRQARKEAVCKIQAILEKLEKKGL"
     misc_feature    247..>717
                     /gene="BAG4"
                     /note="chromosomal replication initiator protein DnaA;
                     Region: dnaA; cl42516"
                     /db_xref="CDD:455861"
     misc_feature    1054..1287
                     /gene="BAG4"
                     /note="BAG domains, present in regulator of Hsp70
                     proteins; Region: BAG; smart00264"
                     /db_xref="CDD:214591"
ORIGIN      
        1 cgcccggggg cagtggagcc gatgtcggcc ttgaggcgct caggctacgg ccccagtgac
       61 ggtccgtctt atgggcgcta ctacgggcct gggggtggag atgtacccgt gcacccacct
      121 ccgcccatat atcctccccg ccccgaaccc ccccagcctc ccatttcctg gcgagtgcgc
      181 gggggcggcc cggctgagac cacctggccg ggagaaggcg gaggaggcga tggctactat
      241 ccctctggaa gcgcctggtc ggagccgggt cgggctggag gaggccacca gagtttgaat
      301 tcttatacaa atggagcata tggcccacca taccccactg gccctgggac aaatactgcc
      361 ccatacccag gggcttatta cacatctggg tatgctcaga ccaattactc cacagaggtt
      421 ccaagcactt accgttcacc tggcaacagc ccaaccccag tctctccttg gatgtatccc
      481 cagcaggact gccagactga agcagcccct cttagggggc aggttccagg atatcctgct
      541 tcacagaacc ctggaatgag cgtgccccat tatccttatg gggatggtaa tcgtagtgtt
      601 ccacaaccag gaccaactgt acgatcccag ggggactcct gggctcctcc gggtgcttat
      661 ggcatgggag cccgttaccc ctggccttca gctgccccct cagcaccacc tgggagtctc
      721 tacgtgagtg agagcgcttc atcatggccg agcagtggct ctcctcggcc acctccttcc
      781 cccccagccc cacagcccaa ggattcctca tacccctata gccaatcaga tcaaggcatg
      841 aaccggcaca actttccttg cagtgtccac gtccatcagt acgagtcctc gggaacagtg
      901 aacaatgata attcagagct cttggattcc caagtccagt atactgctga gcctcagctg
      961 tatggtaatg cctccaacga gcatcccagc aatcaagatc agagtcataa tcttcctgaa
     1021 gagtgtttat cttcagatga agggactccc ccaagtatta agaaaatcat acatgtgctg
     1081 gagaaggtcc agtatcttga gcaagaagta gaagagttcg taggaaaaaa gacagacaaa
     1141 gcatactggc ttttggaaga aatgctaacc aaggaacttt tggaactgga ttcagttgaa
     1201 actgggggcc aggactctgt ccggcaggcc aggaaagagg ctgtttgtaa aatccaggcc
     1261 atactggaaa aattggaaaa aaaaggatta tgaagggatt tagaacaaag gggaagcctg
     1321 ttactaactt gaccaaagaa ctcttgattt tggttaatta ccctcttttt gaaatgcctg
     1381 ttgaggagaa gaagcaatac attccaactt tcctttgata taaaacttga aaaactggta
     1441 aaggacttgg aagaacagtt gggttatgag ttgttttcag ttttcagacc aatgaatgta
     1501 ataggaagct atggagttta tcagtattgc caagtagact caccccttaa gaaatttatg
     1561 ggtatctgca agctgcttct tatcagcagg agggaaatcc accttatgta acaggcttat
     1621 cagaaaccta ccggataaga ctggatgttg tctgagacaa acaggctctg tttttttaaa
     1681 catctggatt acttgtcaca tttttgtaca ttgtgactgc tttcaccgta cactttgtgt
     1741 gtaaattata gcttggactt ta
//
LOCUS       XM_032618283            1615 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BAG cochaperone 4 (BAG4), transcript
            variant X3, mRNA.
ACCESSION   XM_032618283
VERSION     XM_032618283.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1615
                     /gene="BAG4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746683"
     CDS             22..1146
                     /gene="BAG4"
                     /codon_start=1
                     /product="BAG family molecular chaperone regulator 4
                     isoform X3"
                     /protein_id="XP_032474174.1"
                     /db_xref="GeneID:116746683"
                     /translation="MSALRRSGYGPSDGPSYGRYYGPGGGDVPVHPPPPIYPPRPEPP
                     QPPISWRVRGGGPAETTWPGEGGGGDGYYPSGSAWSEPGRAGGGHQEQPPYPSYNSNY
                     WNSPARPRAPYPSTYPVRPEMQGQNPGMSVPHYPYGDGNRSVPQPGPTVRSQGDSWAP
                     PGAYGMGARYPWPSAAPSAPPGSLYVSESASSWPSSGSPRPPPSPPAPQPKDSSYPYS
                     QSDQGMNRHNFPCSVHVHQYESSGTVNNDNSELLDSQVQYTAEPQLYGNASNEHPSNQ
                     DQSHNLPEECLSSDEGTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLT
                     KELLELDSVETGGQDSVRQARKEAVCKIQAILEKLEKKGL"
     misc_feature    <331..579
                     /gene="BAG4"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; Region: PABP-1234; TIGR01628"
                     /db_xref="CDD:130689"
     misc_feature    907..1140
                     /gene="BAG4"
                     /note="BAG domains, present in regulator of Hsp70
                     proteins; Region: BAG; smart00264"
                     /db_xref="CDD:214591"
ORIGIN      
        1 cgcccggggg cagtggagcc gatgtcggcc ttgaggcgct caggctacgg ccccagtgac
       61 ggtccgtctt atgggcgcta ctacgggcct gggggtggag atgtacccgt gcacccacct
      121 ccgcccatat atcctccccg ccccgaaccc ccccagcctc ccatttcctg gcgagtgcgc
      181 gggggcggcc cggctgagac cacctggccg ggagaaggcg gaggaggcga tggctactat
      241 ccctctggaa gcgcctggtc ggagccgggt cgggctggag gaggccacca ggagcagcca
      301 ccatatccta gctacaattc caactattgg aattctcctg cccgacctcg ggctccttac
      361 ccaagtactt atcctgtaag accggaaatg caaggccaga accctggaat gagcgtgccc
      421 cattatcctt atggggatgg taatcgtagt gttccacaac caggaccaac tgtacgatcc
      481 cagggggact cctgggctcc tccgggtgct tatggcatgg gagcccgtta cccctggcct
      541 tcagctgccc cctcagcacc acctgggagt ctctacgtga gtgagagcgc ttcatcatgg
      601 ccgagcagtg gctctcctcg gccacctcct tcccccccag ccccacagcc caaggattcc
      661 tcatacccct atagccaatc agatcaaggc atgaaccggc acaactttcc ttgcagtgtc
      721 cacgtccatc agtacgagtc ctcgggaaca gtgaacaatg ataattcaga gctcttggat
      781 tcccaagtcc agtatactgc tgagcctcag ctgtatggta atgcctccaa cgagcatccc
      841 agcaatcaag atcagagtca taatcttcct gaagagtgtt tatcttcaga tgaagggact
      901 cccccaagta ttaagaaaat catacatgtg ctggagaagg tccagtatct tgagcaagaa
      961 gtagaagagt tcgtaggaaa aaagacagac aaagcatact ggcttttgga agaaatgcta
     1021 accaaggaac ttttggaact ggattcagtt gaaactgggg gccaggactc tgtccggcag
     1081 gccaggaaag aggctgtttg taaaatccag gccatactgg aaaaattgga aaaaaaagga
     1141 ttatgaaggg atttagaaca aaggggaagc ctgttactaa cttgaccaaa gaactcttga
     1201 ttttggttaa ttaccctctt tttgaaatgc ctgttgagga gaagaagcaa tacattccaa
     1261 ctttcctttg atataaaact tgaaaaactg gtaaaggact tggaagaaca gttgggttat
     1321 gagttgtttt cagttttcag accaatgaat gtaataggaa gctatggagt ttatcagtat
     1381 tgccaagtag actcacccct taagaaattt atgggtatct gcaagctgct tcttatcagc
     1441 aggagggaaa tccaccttat gtaacaggct tatcagaaac ctaccggata agactggatg
     1501 ttgtctgaga caaacaggct ctgttttttt aaacatctgg attacttgtc acatttttgt
     1561 acattgtgac tgctttcacc gtacactttg tgtgtaaatt atagcttgga cttta
//
LOCUS       XM_032618284            1271 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 5 (PLPP5),
            transcript variant X1, mRNA.
ACCESSION   XM_032618284
VERSION     XM_032618284.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1271
                     /gene="PLPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746685"
     CDS             22..948
                     /gene="PLPP5"
                     /codon_start=1
                     /product="phospholipid phosphatase 5 isoform X1"
                     /protein_id="XP_032474175.1"
                     /db_xref="GeneID:116746685"
                     /translation="MWTCSLPVISCYHSVSKRPSWAGGDQRGAERPSASTAPARPARS
                     CGSPARLPAARGVLRRTWIRKRRVRVVPGTEGPGLCKGNRAAPALPEAHPARGDVALP
                     ESVVALLAPLAPVILARCLKKADAVDSRQACLAASLALALNGVFTNTVKLIVGRPRPD
                     FFYRCFPDGQAHHDLTCTGNEDVVNEGRKSFPSGHSSFAFAGLAFASFYLAGKLHCFT
                     PRGRGESWRFCSFLSPLLFAAVIALSRTCDYKHHWQDVLAGSTIGLTFAYVCYRQYYP
                     PLTDAQCHRPLQRSPALPTAQKQPGDPRHFDV"
     misc_feature    334..843
                     /gene="PLPP5"
                     /note="PAP2, subfamily similar to human
                     phosphatidic_acid_phosphatase_type_2_domain_containing_1.
                     Most likely membrane-associated phosphatidic acid
                     phosphatases. Plant members of this group are
                     constitutively expressed in many tissues and exhibit
                     both...; Region: PAP2_containing_1_like; cd03390"
                     /db_xref="CDD:239484"
     misc_feature    order(472..474,493..495,598..606,754..756,772..774,
                     784..786)
                     /gene="PLPP5"
                     /note="active site"
                     /db_xref="CDD:239484"
ORIGIN      
        1 cccgtatgtt gcaaattaaa tatgtggact tgttcattgc ccgtaatttc ttgctaccac
       61 tcagtgagca agaggccatc ctgggcggga ggggaccagc gcggggccga aagacccagc
      121 gcgtccaccg cgccagcgag gcccgcaagg tcctgcggga gcccggcacg tcttcccgca
      181 gcacggggtg tgcttcggcg gacttggatc cggaaacgaa gagtccgcgt ggtccccggg
      241 acggaaggcc cgggcctctg taagggtaac agagctgctc ccgcccttcc agaggctcat
      301 ccagcccgag gagatgtggc tctaccggaa tccgtcgtcg ccttgctggc cccgctggcc
      361 ccggtcatcc tggccaggtg tctgaagaag gcggacgcag tggacagccg gcaggcctgc
      421 ctggctgcca gcctggccct ggctctgaac ggcgtcttca ccaacacagt caaactgata
      481 gtggggaggc cacgcccaga cttcttctac cgttgcttcc ccgacgggca agcccatcat
      541 gacttgacgt gcacaggaaa tgaggacgtg gtgaatgagg gccgcaagag cttccccagt
      601 ggacattctt cctttgcatt tgctggtctg gccttcgcat ccttctacct ggcagggaag
      661 ttacactgct tcacaccacg aggccgaggg gaatcttgga ggttctgttc ctttctgtca
      721 cccctactct ttgcagctgt gattgcactg tcccgcacct gtgactacaa gcatcactgg
      781 caagatgtcc tggctggatc caccatcggc ctgacgttcg cctatgtctg ctataggcag
      841 tactaccctc ccctgacgga cgcccagtgc cacagaccac tgcagcgcag ccctgctctt
      901 cccaccgcgc aaaagcagcc cggcgaccct cgtcattttg atgtttagac actggagctg
      961 cctccctgga aaacaggact gaagagccgc ccaaatgcac cagctgtgcc acgcagccaa
     1021 ggcagggcag ggcagtcaga gacacggctg tctggagggc aggtgagtct cctcccgccc
     1081 cgccctcacc gtagggtata atggaccatg acgggacgtc ggcggaactg atggagtagg
     1141 acctataacg gcctttctct gtgttgtgat tatattttat ttgttttctt tttgtgatta
     1201 tattataaat atgaccttga tttgtgtatt tctgtaacat attttcaata tatctttttc
     1261 ctaacggtga a
//
LOCUS       XR_004347845            2265 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 5 (PLPP5),
            transcript variant X2, misc_RNA.
ACCESSION   XR_004347845
VERSION     XR_004347845.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2265
                     /gene="PLPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746685"
     misc_RNA        1..2265
                     /gene="PLPP5"
                     /product="phospholipid phosphatase 5, transcript variant
                     X2"
                     /db_xref="GeneID:116746685"
ORIGIN      
        1 cccgtatgtt gcaaattaaa tatgtggact tgttcattgc ccgtaatttc ttgctaccac
       61 tcagtgagca agaggccatc ctgggcggga ggggaccagc gcggggccga aagacccagc
      121 gcgtccaccg cgccagcgag gcccgcaagg tcctgcggga gcccggcacg tcttcccgca
      181 gcacggggtg tgcttcggcg gacttggatc cggaaacgaa gagtccgcgt ggtccccggg
      241 acggaaggcc cgggcctctg taagggtaac agagctgctc ccgcccttcc agaggctcat
      301 ccagcccgag gagatgtggc tctaccggaa tccgtcgtcg ccttgctggc cccgctggcc
      361 ccggtcatcc tggccaggtg tctgaagaag gcggacgcag tggacagccg gcaggcctgc
      421 ctggctgcca gcctggccct ggctctgaac ggcgtcttca ccaacacagt caaactgata
      481 gtggggaggc cacgcccaga cttcttctac cgttgcttcc ccgacgggca agcccatcat
      541 gacttgacgt gcacaggaaa tgaggacgtg gtgaatgagg gccgcaagag cttccccagt
      601 ggacattctt cctttgcatt tgctggtctg gccttcgcat ccttctacct ggcagggaag
      661 ttacactgct tcacaccacg aggccgaggg gaatcttgga ggttctgttc ctttctgtca
      721 cccctactct ttgcagctgt gattgcactg tcccgcacct gtgactacaa gcatcactgg
      781 caagatgtcc tggctggatc caccatcggc ctgacgttcg cctatgtctg ctataggcag
      841 tactaccctc ccctgacgga cgcccagtgc cacagaccac tgcagcgcag ccctgctctt
      901 cccaccgcgc aaaagcagcc cggcgaccct cgtcattttg atgtttagac actggagctg
      961 cctccctgga aaacaggact gaagagccgc ccaaatgcac cagctgtgcc acgcagccaa
     1021 ggcagggcag ggcagtcaga gacacggctg tctggagggc agggctttgg ataccatcat
     1081 atatttactt acaagaaacc gatataaaaa gcgaaacaca gcttgcctgt ctacaccgct
     1141 ctgtccacca gggcctgtag gaacctgaga ggagtgtgaa ggactgtcac aaagagaact
     1201 gcaaagacaa tcacaaactg agacctgtga gaaagaaaat acctacagca cagcggtgag
     1261 caagatgcct tggaaacaat tagtctccat tcacttgtct tcttcaaggt gcatctcact
     1321 tgcacgctct gacactgact ctgcaccagc tgttcctggc cccatagacg caggtttgtc
     1381 tttcagaata aggaacactt ccccctagcc agatctacca acactgcctg tgccgggagc
     1441 ctgttccata gcgacctgca ctacgggtac ctaaggaggc aacgctgttt atgtgcttga
     1501 agaggacact ctgcagtact cccttcaccc aagcagctgt ggcagatggc ttacacaaat
     1561 tctatttcac catcaacgca ccactgagac atttcattca tcacttaata agcagtcaaa
     1621 gctgtgtaat ttcaggtctg tcagctttta aaccctcaag aactaacaac taagtcggac
     1681 tttgtctaga gtctcccagt ttgaagtatg atatgatata aaagggcagg tctaggatat
     1741 ataacatctt tgctttataa agatgcacct gatgggaact aaactgtcca ctttagactg
     1801 tccaccgaga gcagctcaaa cagctgtgga aacaatgaaa agcatcagtg attcctagca
     1861 ataaatctgt cagtcagctg tagagagagt aaacagtatt tacagatttt agtatttctt
     1921 catacagtac gtgtaggaaa taaagctggc tcaagagaat ctgatggcca ccagtctccc
     1981 tcattcactt agacttggcc ttcaaatgca gagaacaccc atgagcgatg agcagacccc
     2041 aaaatgcctt ctgaatctca ggagtccact tccagattag aatattttct aaagataagc
     2101 aataatttct tagaaaaatt tatacccaac ccaaaacaaa aactcagact ttataccatc
     2161 tcaagtaata aacaataaag tgtggtacct aagagaaaaa caaataccgt atgctaacac
     2221 atatatatgg aatctaagaa aaagaaaaaa taaaggtcat gaagt
//
LOCUS       XR_004347846            2176 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 5 (PLPP5),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004347846
VERSION     XR_004347846.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2176
                     /gene="PLPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746685"
     misc_RNA        1..2176
                     /gene="PLPP5"
                     /product="phospholipid phosphatase 5, transcript variant
                     X3"
                     /db_xref="GeneID:116746685"
ORIGIN      
        1 cccgtatgtt gcaaattaaa tatgtggact tgttcattgc ccgtaatttc ttgctaccac
       61 tcagtgagca agaggccatc ctgggcggga ggggaccagc gcggggccga aagacccagc
      121 gcgtccaccg cgccagcgag gcccgcaagg tcctgcggga gcccggcacg tcttcccgca
      181 gcacggggtg tgcttcggcg gacttggatc cggaaacgaa gagtccgcgt ggtccccggg
      241 acggaaggcc cgggcctctg taagggtaac agagctgctc ccgcccttcc agaggctcat
      301 ccagcccgag gagatgtggc tctaccggaa tccgtcgtcg ccttgctggc cccgctggcc
      361 ccggtcatcc tggccaggtg tctgaagaag gcggacgcag tggacagccg gcaggcctgc
      421 ctggctgcca gcctggccct ggctctgaac ggcgtcttca ccaacacagt caaactgata
      481 gtggggaggc cacgcccaga cttcttctac cgttgcttcc ccgacgggca agcccatcat
      541 gacttgacgt gcacaggaaa tgaggacgtg gtgaatgagg gccgcaagag cttccccagt
      601 ggacattctt cctttgcatt tgctggtctg gccttcgcat ccttctacct ggcagggaag
      661 ttacactgct tcacaccacg aggccgaggg gaatcttgga ggttctgttc ctttctgtca
      721 cccctactct ttgcagctgt gattgcactg tcccgcacct gtgactacaa gcatcactgg
      781 caagatgtcc tggctggatc caccatcggc ctgacgttcg cctatgtctg ctataggcag
      841 tactaccctc ccctgacgga cgcccagtgc cacagaccac tgcagcgcag ccctgctctt
      901 cccaccgcgc aaaagcagcc cggcgaccct cgtcattttg atgtttagac actggagctg
      961 cctccctgga aaacaggact gaagagccgc ccaaatgcac cagctgtgcc acgcagccaa
     1021 ggcagggcag ggcagtcaga gacacggctg tctggagggc agggcctgta ggaacctgag
     1081 aggagtgtga aggactgtca caaagagaac tgcaaagaca atcacaaact gagacctgtg
     1141 agaaagaaaa tacctacagc acagcggtga gcaagatgcc ttggaaacaa ttagtctcca
     1201 ttcacttgtc ttcttcaagg tgcatctcac ttgcacgctc tgacactgac tctgcaccag
     1261 ctgttcctgg ccccatagac gcaggtttgt ctttcagaat aaggaacact tccccctagc
     1321 cagatctacc aacactgcct gtgccgggag cctgttccat agcgacctgc actacgggta
     1381 cctaaggagg caacgctgtt tatgtgcttg aagaggacac tctgcagtac tcccttcacc
     1441 caagcagctg tggcagatgg cttacacaaa ttctatttca ccatcaacgc accactgaga
     1501 catttcattc atcacttaat aagcagtcaa agctgtgtaa tttcaggtct gtcagctttt
     1561 aaaccctcaa gaactaacaa ctaagtcgga ctttgtctag agtctcccag tttgaagtat
     1621 gatatgatat aaaagggcag gtctaggata tataacatct ttgctttata aagatgcacc
     1681 tgatgggaac taaactgtcc actttagact gtccaccgag agcagctcaa acagctgtgg
     1741 aaacaatgaa aagcatcagt gattcctagc aataaatctg tcagtcagct gtagagagag
     1801 taaacagtat ttacagattt tagtatttct tcatacagta cgtgtaggaa ataaagctgg
     1861 ctcaagagaa tctgatggcc accagtctcc ctcattcact tagacttggc cttcaaatgc
     1921 agagaacacc catgagcgat gagcagaccc caaaatgcct tctgaatctc aggagtccac
     1981 ttccagatta gaatattttc taaagataag caataatttc ttagaaaaat ttatacccaa
     2041 cccaaaacaa aaactcagac tttataccat ctcaagtaat aaacaataaa gtgtggtacc
     2101 taagagaaaa acaaataccg tatgctaaca catatatatg gaatctaaga aaaagaaaaa
     2161 ataaaggtca tgaagt
//
LOCUS       XR_004347847            1681 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 5 (PLPP5),
            transcript variant X4, misc_RNA.
ACCESSION   XR_004347847
VERSION     XR_004347847.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1681
                     /gene="PLPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746685"
     misc_RNA        1..1681
                     /gene="PLPP5"
                     /product="phospholipid phosphatase 5, transcript variant
                     X4"
                     /db_xref="GeneID:116746685"
ORIGIN      
        1 cccgtatgtt gcaaattaaa tatgtggact tgttcattgc ccgtaatttc ttgctaccac
       61 tcagtgagca agaggccatc ctgggcggga ggggaccagc gcggggccga aagacccagc
      121 gcgtccaccg cgccagcgag gcccgcaagg tcctgcggga gcccggcacg tcttcccgca
      181 gcacggggtg tgcttcggcg gacttggatc cggaaacgaa gagtccgcgt ggtccccggg
      241 acggaaggcc cgggcctctg taagggtaac agagctgctc ccgcccttcc agaggctcat
      301 ccagcccgag gagatgtggc tctaccggaa tccgtcgtcg ccttgctggc cccgctggcc
      361 ccggtcatcc tggccaggtg tctgaagaag gcggacgcag tggacagccg gcaggcctgc
      421 ctggctgcca gcctggccct ggctctgaac ggcgtcttca ccaacacagt caaactgata
      481 gtggggaggc cacgcccaga cttcttctac cgttgcttcc ccgacgggca agcccatcat
      541 gacttgacgt gcacaggaaa tgaggacgtg gtgaatgagg gccgcaagag cttccccagt
      601 ggacattctt cctttgcatt tgctggtctg gccttcgcat ccttctacct ggcagggaag
      661 ttacactgct tcacaccacg aggccgaggg gaatcttgga ggttctgttc ctttctgtca
      721 cccctactct ttgcagctgt gattgcactg tcccgcacct gtgactacaa gcatcactgg
      781 caagatgtcc tggctggatc caccatcggc ctgacgttcg cctatgtctg ctataggcag
      841 tactaccctc ccctgacgga cgcccagtgc cacagaccac tgcagcgcag ccctgctctt
      901 cccaccgcgc aaaagcagcc cggcgaccct cgtcattttg atgtttagac actggagctg
      961 cctccctgga aaacaggact gaagagccgc ccaaatgcac cagctgtgcc acgcagccaa
     1021 ggcagggcag ggcagtcaga gacacggctg tctggagggc agacaggaag attatcttcc
     1081 taagacccca gtggtgagca aggctggcaa cctgcaggaa atgaggccgc tgaggagagg
     1141 aaaaaactgc agcaacaaag aggcaggtgt tctggggaag gacccctcag tgcccatctg
     1201 agggagggag ttgaagaggt catcacgctg gaaggcgacc agagagaacg ccagagtctg
     1261 ccacacaaac ttcctaacta cacatctaaa gggctgagtg acataaatcc caggatgagc
     1321 tgtttgtact taaagctgta actgttgccc tggtaactct cagatggtca actattaaga
     1381 ttctgagttt agatcctaaa aatggcaagt attattggac caagtcgcta acaaaacaaa
     1441 catacactaa cctttctcta agtggcctac tgtgctttta tcccatgaat tttaagcaga
     1501 gtccctctaa aaatgagtaa taacctggat cttggtgaca ggcaacaaaa agtatattta
     1561 taaagagctg aggctccaca gttcctcatc acatgttaat atgtaggaag agctgcggct
     1621 ccacagttcc tcgtcacatg taatatgctg catacatgac atttaaaaac ttacattaag
     1681 c
//
LOCUS       XM_032618285            1135 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 5 (PLPP5),
            transcript variant X5, mRNA.
ACCESSION   XM_032618285
VERSION     XM_032618285.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1135
                     /gene="PLPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746685"
     CDS             30..812
                     /gene="PLPP5"
                     /codon_start=1
                     /product="phospholipid phosphatase 5 isoform X2"
                     /protein_id="XP_032474176.1"
                     /db_xref="GeneID:116746685"
                     /translation="MGKEVAAEVGLRLALFAVFLVTELLPPFQRLIQPEEMWLYRNPY
                     VEAEYFATKPMFVVALLAPLAPVILARCLKKADAVDSRQACLAASLALALNGVFTNTV
                     KLIVGRPRPDFFYRCFPDGQAHHDLTCTGNEDVVNEGRKSFPSGHSSFAFAGLAFASF
                     YLAGKLHCFTPRGRGESWRFCSFLSPLLFAAVIALSRTCDYKHHWQDVLAGSTIGLTF
                     AYVCYRQYYPPLTDAQCHRPLQRSPALPTAQKQPGDPRHFDV"
     misc_feature    141..707
                     /gene="PLPP5"
                     /note="PAP2, subfamily similar to human
                     phosphatidic_acid_phosphatase_type_2_domain_containing_1.
                     Most likely membrane-associated phosphatidic acid
                     phosphatases. Plant members of this group are
                     constitutively expressed in many tissues and exhibit
                     both...; Region: PAP2_containing_1_like; cd03390"
                     /db_xref="CDD:239484"
     misc_feature    order(336..338,357..359,462..470,618..620,636..638,
                     648..650)
                     /gene="PLPP5"
                     /note="active site"
                     /db_xref="CDD:239484"
ORIGIN      
        1 ccacgtcagc cttgagcgcg cgcgccgtga tggggaagga ggtggcggcg gaggtgggcc
       61 tgcggctcgc gctgttcgcg gtcttcctgg taacagagct gctcccgccc ttccagaggc
      121 tcatccagcc cgaggagatg tggctctacc ggaatccgta cgtggaagca gagtatttcg
      181 ccaccaagcc gatgtttgtc gtcgccttgc tggccccgct ggccccggtc atcctggcca
      241 ggtgtctgaa gaaggcggac gcagtggaca gccggcaggc ctgcctggct gccagcctgg
      301 ccctggctct gaacggcgtc ttcaccaaca cagtcaaact gatagtgggg aggccacgcc
      361 cagacttctt ctaccgttgc ttccccgacg ggcaagccca tcatgacttg acgtgcacag
      421 gaaatgagga cgtggtgaat gagggccgca agagcttccc cagtggacat tcttcctttg
      481 catttgctgg tctggccttc gcatccttct acctggcagg gaagttacac tgcttcacac
      541 cacgaggccg aggggaatct tggaggttct gttcctttct gtcaccccta ctctttgcag
      601 ctgtgattgc actgtcccgc acctgtgact acaagcatca ctggcaagat gtcctggctg
      661 gatccaccat cggcctgacg ttcgcctatg tctgctatag gcagtactac cctcccctga
      721 cggacgccca gtgccacaga ccactgcagc gcagccctgc tcttcccacc gcgcaaaagc
      781 agcccggcga ccctcgtcat tttgatgttt agacactgga gctgcctccc tggaaaacag
      841 gactgaagag ccgcccaaat gcaccagctg tgccacgcag ccaaggcagg gcagggcagt
      901 cagagacacg gctgtctgga gggcaggtga gtctcctccc gccccgccct caccgtaggg
      961 tataatggac catgacggga cgtcggcgga actgatggag taggacctat aacggccttt
     1021 ctctgtgttg tgattatatt ttatttgttt tctttttgtg attatattat aaatatgacc
     1081 ttgatttgtg tatttctgta acatattttc aatatatctt tttcctaacg gtgaa
//
LOCUS       XR_004347848            1219 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 5 (PLPP5),
            transcript variant X6, misc_RNA.
ACCESSION   XR_004347848
VERSION     XR_004347848.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1219
                     /gene="PLPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:116746685"
     misc_RNA        1..1219
                     /gene="PLPP5"
                     /product="phospholipid phosphatase 5, transcript variant
                     X6"
                     /db_xref="GeneID:116746685"
ORIGIN      
        1 cccgtatgtt gcaaattaaa tatgtggact tgttcattgc ccgtaatttc ttgctaccac
       61 tcagtgagca agaggccatc ctgggcggga ggggaccagc gcggggccga aagacccagc
      121 gcgtccaccg cgccagcgag gcccgcaagg tcctgcggga gcccggcacg tcttcccgca
      181 gcacggggtg tgcttcggcg gacttggatc cggaaacgaa gagtccgcgt ggtccccggg
      241 acggaaggcc cgggcctctg taagggtaac agagctgctc ccgcccttcc agaggctcat
      301 ccagcccgag gagatgtggc tctaccggaa tccgtcgtcg ccttgctggc cccgctggcc
      361 ccggtcatcc tggccaggtg tctgaagaag gcggacgcag tggacagccg gcaggcctgc
      421 ctggctgcca gcctggccct ggctctgaac ggcgtcttca ccaacacagt caaactgata
      481 gtggggaggc cacgcccaga cttcttctac cgttgcttcc ccgacgggca agcccatcat
      541 gacttgacgt gcacaggaaa tgaggacgtg gtgaatgagg gccgcaagag cttccccagt
      601 ggacattctt cctttgcatt tgctggtctg gccttcgcat ccttctacct ggcagggaag
      661 ttacactgct tcacaccacg aggccgaggg gaatcttgga ggttctgttc ctttctgtca
      721 cccctactct ttgcagctgt gattgcactg tcccgcacct gtgactacaa gcatcactgg
      781 caaggcagta ctaccctccc ctgacggacg cccagtgcca cagaccactg cagcgcagcc
      841 ctgctcttcc caccgcgcaa aagcagcccg gcgaccctcg tcattttgat gtttagacac
      901 tggagctgcc tccctggaaa acaggactga agagccgccc aaatgcacca gctgtgccac
      961 gcagccaagg cagggcaggg cagtcagaga cacggctgtc tggagggcag gtgagtctcc
     1021 tcccgccccg ccctcaccgt agggtataat ggaccatgac gggacgtcgg cggaactgat
     1081 ggagtaggac ctataacggc ctttctctgt gttgtgatta tattttattt gttttctttt
     1141 tgtgattata ttataaatat gaccttgatt tgtgtatttc tgtaacatat tttcaatata
     1201 tctttttcct aacggtgaa
//
LOCUS       XM_032618286            1162 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 5 (PLPP5),
            transcript variant X7, mRNA.
ACCESSION   XM_032618286
VERSION     XM_032618286.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1162
                     /gene="PLPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746685"
     CDS             132..839
                     /gene="PLPP5"
                     /codon_start=1
                     /product="phospholipid phosphatase 5 isoform X3"
                     /protein_id="XP_032474177.1"
                     /db_xref="GeneID:116746685"
                     /translation="MGKEVAAEGNRAAPALPEAHPARGDVALPESVVALLAPLAPVIL
                     ARCLKKADAVDSRQACLAASLALALNGVFTNTVKLIVGRPRPDFFYRCFPDGQAHHDL
                     TCTGNEDVVNEGRKSFPSGHSSFAFAGLAFASFYLAGKLHCFTPRGRGESWRFCSFLS
                     PLLFAAVIALSRTCDYKHHWQDVLAGSTIGLTFAYVCYRQYYPPLTDAQCHRPLQRSP
                     ALPTAQKQPGDPRHFDV"
     misc_feature    225..734
                     /gene="PLPP5"
                     /note="PAP2, subfamily similar to human
                     phosphatidic_acid_phosphatase_type_2_domain_containing_1.
                     Most likely membrane-associated phosphatidic acid
                     phosphatases. Plant members of this group are
                     constitutively expressed in many tissues and exhibit
                     both...; Region: PAP2_containing_1_like; cd03390"
                     /db_xref="CDD:239484"
     misc_feature    order(363..365,384..386,489..497,645..647,663..665,
                     675..677)
                     /gene="PLPP5"
                     /note="active site"
                     /db_xref="CDD:239484"
ORIGIN      
        1 cagacagctg gggcaacccc tcacttccgt ccgtcgctgt ctcaggcgct gggggccgct
       61 ctcgccccgc ctcggccccg ccccccccct ccctcggcgc cgccacgtca gccttgagcg
      121 cgcgcgccgt gatggggaag gaggtggcgg cggagggtaa cagagctgct cccgcccttc
      181 cagaggctca tccagcccga ggagatgtgg ctctaccgga atccgtcgtc gccttgctgg
      241 ccccgctggc cccggtcatc ctggccaggt gtctgaagaa ggcggacgca gtggacagcc
      301 ggcaggcctg cctggctgcc agcctggccc tggctctgaa cggcgtcttc accaacacag
      361 tcaaactgat agtggggagg ccacgcccag acttcttcta ccgttgcttc cccgacgggc
      421 aagcccatca tgacttgacg tgcacaggaa atgaggacgt ggtgaatgag ggccgcaaga
      481 gcttccccag tggacattct tcctttgcat ttgctggtct ggccttcgca tccttctacc
      541 tggcagggaa gttacactgc ttcacaccac gaggccgagg ggaatcttgg aggttctgtt
      601 cctttctgtc acccctactc tttgcagctg tgattgcact gtcccgcacc tgtgactaca
      661 agcatcactg gcaagatgtc ctggctggat ccaccatcgg cctgacgttc gcctatgtct
      721 gctataggca gtactaccct cccctgacgg acgcccagtg ccacagacca ctgcagcgca
      781 gccctgctct tcccaccgcg caaaagcagc ccggcgaccc tcgtcatttt gatgtttaga
      841 cactggagct gcctccctgg aaaacaggac tgaagagccg cccaaatgca ccagctgtgc
      901 cacgcagcca aggcagggca gggcagtcag agacacggct gtctggaggg caggtgagtc
      961 tcctcccgcc ccgccctcac cgtagggtat aatggaccat gacgggacgt cggcggaact
     1021 gatggagtag gacctataac ggcctttctc tgtgttgtga ttatatttta tttgttttct
     1081 ttttgtgatt atattataaa tatgaccttg atttgtgtat ttctgtaaca tattttcaat
     1141 atatcttttt cctaacggtg aa
//
LOCUS       XM_032618287            1064 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phospholipid phosphatase 5 (PLPP5),
            transcript variant X8, mRNA.
ACCESSION   XM_032618287
VERSION     XM_032618287.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1064
                     /gene="PLPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746685"
     CDS             67..741
                     /gene="PLPP5"
                     /codon_start=1
                     /product="phospholipid phosphatase 5 isoform X4"
                     /protein_id="XP_032474178.1"
                     /db_xref="GeneID:116746685"
                     /translation="MWLYRNPYVEAEYFATKPMFVVALLAPLAPVILARCLKKADAVD
                     SRQACLAASLALALNGVFTNTVKLIVGRPRPDFFYRCFPDGQAHHDLTCTGNEDVVNE
                     GRKSFPSGHSSFAFAGLAFASFYLAGKLHCFTPRGRGESWRFCSFLSPLLFAAVIALS
                     RTCDYKHHWQDVLAGSTIGLTFAYVCYRQYYPPLTDAQCHRPLQRSPALPTAQKQPGD
                     PRHFDV"
     misc_feature    70..636
                     /gene="PLPP5"
                     /note="PAP2, subfamily similar to human
                     phosphatidic_acid_phosphatase_type_2_domain_containing_1.
                     Most likely membrane-associated phosphatidic acid
                     phosphatases. Plant members of this group are
                     constitutively expressed in many tissues and exhibit
                     both...; Region: PAP2_containing_1_like; cd03390"
                     /db_xref="CDD:239484"
     misc_feature    order(265..267,286..288,391..399,547..549,565..567,
                     577..579)
                     /gene="PLPP5"
                     /note="active site"
                     /db_xref="CDD:239484"
ORIGIN      
        1 gcccgggcct ctgtaagggt aacagagctg ctcccgccct tccagaggct catccagccc
       61 gaggagatgt ggctctaccg gaatccgtac gtggaagcag agtatttcgc caccaagccg
      121 atgtttgtcg tcgccttgct ggccccgctg gccccggtca tcctggccag gtgtctgaag
      181 aaggcggacg cagtggacag ccggcaggcc tgcctggctg ccagcctggc cctggctctg
      241 aacggcgtct tcaccaacac agtcaaactg atagtgggga ggccacgccc agacttcttc
      301 taccgttgct tccccgacgg gcaagcccat catgacttga cgtgcacagg aaatgaggac
      361 gtggtgaatg agggccgcaa gagcttcccc agtggacatt cttcctttgc atttgctggt
      421 ctggccttcg catccttcta cctggcaggg aagttacact gcttcacacc acgaggccga
      481 ggggaatctt ggaggttctg ttcctttctg tcacccctac tctttgcagc tgtgattgca
      541 ctgtcccgca cctgtgacta caagcatcac tggcaagatg tcctggctgg atccaccatc
      601 ggcctgacgt tcgcctatgt ctgctatagg cagtactacc ctcccctgac ggacgcccag
      661 tgccacagac cactgcagcg cagccctgct cttcccaccg cgcaaaagca gcccggcgac
      721 cctcgtcatt ttgatgttta gacactggag ctgcctccct ggaaaacagg actgaagagc
      781 cgcccaaatg caccagctgt gccacgcagc caaggcaggg cagggcagtc agagacacgg
      841 ctgtctggag ggcaggtgag tctcctcccg ccccgccctc accgtagggt ataatggacc
      901 atgacgggac gtcggcggaa ctgatggagt aggacctata acggcctttc tctgtgttgt
      961 gattatattt tatttgtttt ctttttgtga ttatattata aatatgacct tgatttgtgt
     1021 atttctgtaa catattttca atatatcttt ttcctaacgg tgaa
//
LOCUS       XM_032618288            2838 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 110
            (CCDC110), mRNA.
ACCESSION   XM_032618288
VERSION     XM_032618288.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 14% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2838
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2838
                     /gene="CCDC110"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 5% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746688"
     CDS             1..2838
                     /gene="CCDC110"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 110"
                     /protein_id="XP_032474179.1"
                     /db_xref="GeneID:116746688"
                     /translation="MADFRARAGKIQDKPETSDCVKQIKKCSSNEGDVSKGAPRELDA
                     WWGAPPPPAPAPSRLECGSPRRAAHLRLPQEESTACVPAPALLPASEQHGPPPRRGPS
                     APSRGRSTLPRPESPRLASFLPAKPKAAYCSVTEKHTDEEEGVDCVLLSAPKILNSSE
                     GVKENGGSETEYGCITESENQIQPHSALKALQHQLESFQALRIQTLQNVSMVQSEISE
                     ILNKSIIEVENPQFSSEKNLVFSTRHEKALPVENQEETLSMEKIQPFEDPRTLHSVEE
                     IFSSDSVNRLSQGINIPCQIHFKDILTSTDNSASENSDLKNYNNLYNFLPNVPQNGMS
                     QADMVILDKSRVTVPYLKHGFCENLDDICHSIKQMKEELQKSHDKELALTNELQTLKA
                     VPRNGNYDLPPTHKEKINFIKEENIESNLNEDIKSKRILELEALVNKLLPPRETVSKF
                     HANFRRKCKKLSKSEIHRGEKNEKNNKEIPITDKNTADLKLHSTLPKHTLAFFDPTKY
                     AMKDKERQRFAAKQGSIIFESEKTSNVNSVTEQCVAKIQYLQNYLKESMQIQKKVLKL
                     ENENLTLKAKIKLLVFTTQSLIQKIEMYEKQLKTLAEEKNTIQPKLIKTEEDGKECVK
                     EVKEIISNYNVLQGQNKTLEEKNSQLSLEKQQIIETLEQLKSKEHKTQSDMAFVNNEN
                     KLLITEMESMKTNILLIQEEKEILEEKTYQLLKEKGSLENERKENQLEIMQLKEKERL
                     AKTEQETLLQIIETVKNEKLNLETTLQESTAAREMMEREIEDIQTYQSTAKENFLQEI
                     KNAKSEASIYKNSLSEMGNKCEMLSKMLMGIKTDNQILKEELKKHSQESIKFENSISR
                     LEEDKILLENYVRSIENERDTLEFEMRNLQKEYLNLSEKIYNHIDLSKMGYISRREKF
                     HFDIYDIYEDTSSPRSRPLAPDLKGMYIMVD"
     misc_feature    <1672..>2655
                     /gene="CCDC110"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
ORIGIN      
        1 atggctgatt tcagggctag ggcagggaaa atacaggata agcctgaaac atctgactgt
       61 gtcaagcaaa ttaaaaagtg ctctagtaat gaaggagatg tgtcaaaagg ggctccccgg
      121 gaattggacg cgtggtgggg agcgccgcct ccccccgccc cggctccttc ccgtctggag
      181 tgcggatctc ctagacgagc cgcacacctc cgccttcccc aggaggaaag caccgcctgc
      241 gtccccgcgc ctgccctgct tccagcctcg gagcagcacg gcccgccgcc gcggcgtggc
      301 cccagcgcgc cttcccgtgg ccgctctacg ctcccgcgtc ccgaatcccc acgcctcgcc
      361 tcctttctcc cagcaaaacc aaaagccgcg tactgttctg ttacagaaaa gcatactgac
      421 gaagaggagg gggttgactg cgttctcctt tcagcaccca agatcctaaa ttcctctgag
      481 ggggtaaagg aaaatggtgg cagtgaaaca gaatacggct gcataacaga atcagaaaat
      541 caaatccaac cacactcagc actgaaagcc cttcagcatc agctggaatc atttcaggct
      601 ctgcgaatac agactttgca gaatgttagc atggtgcagt ctgaaatcag tgaaatattg
      661 aacaaaagta ttattgaagt agaaaaccca caatttagct cagaaaaaaa tctagtattc
      721 agcacacgcc atgaaaaagc tttgcctgta gagaatcaag aagaaaccct ttctatggag
      781 aaaattcagc cttttgagga tcctaggact cttcattccg tagaagaaat attcagtagt
      841 gacagtgtta acaggctctc tcaaggtata aatatcccat gccagataca tttcaaggac
      901 atattaactt caacagataa ttcagcttca gaaaattctg acttgaagaa ttacaataac
      961 ctttataatt tcctacctaa tgtacctcaa aacgggatgt ctcaagctga tatggtaatt
     1021 ctggataagt ccagagttac tgtgccttac ctcaagcatg gattttgtga aaatttagat
     1081 gatatctgcc attctatcaa acaaatgaag gaagagcttc aaaagtcaca tgacaaggaa
     1141 ctggcactta caaatgaact gcaaacttta aaagctgttc caaggaatgg taactatgac
     1201 ctgcccccca ctcacaagga aaaaattaac tttattaagg aagaaaatat tgaaagtaac
     1261 ttaaatgaag atataaaatc aaagagaatt ttggaattag aggcactagt aaacaaatta
     1321 ctcccaccta gggaaacagt gtcaaaattc catgcgaatt ttcgtaggaa atgtaaaaaa
     1381 ctatctaaga gtgaaataca caggggggaa aagaatgaga aaaataataa agaaattcct
     1441 atcactgaca agaatactgc agatttaaaa ctccactcca cacttccaaa acatacactg
     1501 gcattctttg acccaacaaa atatgcaatg aaagacaaag aaagacaacg atttgcagca
     1561 aaacaaggat caataatatt tgaaagtgag aagacatcca acgtcaattc tgttactgaa
     1621 cagtgtgtag caaaaattca gtacttacag aattacctga aagaatctat gcagatacag
     1681 aaaaaagtac tgaaactaga gaatgaaaac ctaaccctta aagcgaaaat taaacttctt
     1741 gtctttacca cacaatctct gatacagaaa attgaaatgt atgaaaaaca acttaagaca
     1801 ttggctgaag aaaagaacac tattcagccc aagttaatta aaacagaaga agatggcaaa
     1861 gaatgtgtta aagaagtgaa agaaataatt agtaactata atgttctcca aggacaaaat
     1921 aaaaccctag aggaaaaaaa tagtcaactt tctttggaga agcaacaaat aatagaaaca
     1981 ttagaacaac taaaaagtaa ggaacacaaa actcaaagtg acatggcctt tgtcaataat
     2041 gaaaataaac tattgatcac agaaatggaa tcaatgaaaa caaatattct gttgatacaa
     2101 gaggaaaaag aaatattaga ggaaaaaaca taccagcttc taaaggaaaa aggctcactt
     2161 gaaaatgaac gaaaagaaaa ccagctagag ataatgcagc taaaagagaa agaaagattg
     2221 gcaaaaactg aacaagagac acttcttcaa ataatagaaa cagttaaaaa tgaaaagctt
     2281 aatcttgaaa caaccttaca agaatctact gctgcgagag aaatgatgga aagagaaatt
     2341 gaggatattc aaacatacca atctaccgcc aaagagaatt ttctgcaaga aataaaaaat
     2401 gcaaaatcag aagcaagtat ttataagaat agtttgtcag aaatgggcaa caaatgtgag
     2461 atgttatcaa aaatgttaat gggaattaaa actgataatc agattctaaa agaagaacta
     2521 aaaaaacata gtcaagaaag tataaaattt gaaaacagca tcagtagact tgaggaagac
     2581 aaaatacttt tagaaaatta tgtaagaagt atagagaatg aaagggatac cttggaattt
     2641 gagatgcgga atcttcaaaa agaatattta aatctaagtg aaaaaatcta taatcatatt
     2701 gacctatcaa aaatgggtta catttcaaga agagagaaat tccattttga catctatgat
     2761 atttatgaag acacctctag tcctaggagt aggcctttag cccctgattt gaaaggtatg
     2821 tatatcatgg tggattag
//
LOCUS       XM_032618289            1317 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif family like 2 (TRIML2),
            mRNA.
ACCESSION   XM_032618289
VERSION     XM_032618289.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1317
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1317
                     /gene="TRIML2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins"
                     /db_xref="GeneID:116746690"
     CDS             1..1317
                     /gene="TRIML2"
                     /codon_start=1
                     /product="probable E3 ubiquitin-protein ligase TRIML2"
                     /protein_id="XP_032474180.1"
                     /db_xref="GeneID:116746690"
                     /translation="MSKRLRFQLEQEIPEDAHYEIHLELPQCFYHDDQITLCDKYFTS
                     QEHKNHVVYGVQEAAENYRKLFQEILNTLKEKLEVAKSILADEQERMVMMQEEEQNLK
                     AMIESEYRIRFWLMTEENKVNFQSPQGRGFNLKLREASQNQLMEFATKLKEKFQEILQ
                     RLNCLGRENMSKLRESEVRLSEQICGLQKITTELEKKCGQSASALLQNARYSLERSES
                     LLLQCLEPARITDLSLCQITGMSKMLEVLQRPITLDPKTAHPCLVLSEDLRSVRLRNV
                     QQDVRSHPERFDFSATVLGVESFTSGRHYWEVDVEKATQWQLGVHGSSASRRASGDKV
                     LFTGSIMGTDYTFWAFPPLKRVSWREQMRRVGVFLDYKYGQISFYDVTKRSLIYNFSD
                     LAFQGALRPVFSLCISNGGMNSDSLSICLPHVSSCNGTFSPQSSLV"
     misc_feature    46..177
                     /gene="TRIML2"
                     /note="B-box-type zinc finger superfamily; Region:
                     Bbox_SF; cl00034"
                     /db_xref="CDD:469587"
     misc_feature    748..1260
                     /gene="TRIML2"
                     /note="PRY/SPRY domain in tripartite motif-containing
                     (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10,
                     TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38,
                     TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72,
                     NF7 and bloodthirsty; Region: SPRY_PRY_C-I_1; cd13733"
                     /db_xref="CDD:293968"
ORIGIN      
        1 atgtccaaaa ggctccgctt ccagttagag caagaaatcc cagaagatgc ccactatgag
       61 atacatctgg agctaccaca gtgtttctac cacgatgacc aaatcacgct ttgtgacaag
      121 tacttcacgt cccaggagca caagaatcac gtggtatatg gagtacaaga ggctgctgag
      181 aattatagga agttattcca ggagatattg aacacattga aggagaaact tgaagtagct
      241 aaaagcatat tggctgatga gcaagaaaga atggtgatga tgcaggaaga agaacagaat
      301 ttgaaagcga tgattgagtc tgaatatagg ataaggttct ggttgatgac tgaagaaaac
      361 aaagtgaact tccagagtcc acaagggcgc ggattcaatc tgaaattgag agaagccagt
      421 cagaaccaac tgatggagtt tgccacaaag ctaaaggaga agttccagga aatactacag
      481 agactgaact gtttggggag agagaacatg agtaaactga gggagagtga agtcaggctc
      541 tctgaacaga tctgcggcct ccagaagatc accacagagc tggagaagaa gtgtgggcaa
      601 tctgcttcag cgttgctcca gaatgcaaga tattctttgg aaaggagtga gtcactactg
      661 cttcagtgtc tagagcccgc ccgaatcaca gacctgagtt tatgccaaat aacaggaatg
      721 agcaaaatgc tagaagtgct gcaaagacct ataactttgg accctaagac agctcatccc
      781 tgtctggtct tatctgagga tctgagaagt gtgagactca gaaatgtgca gcaggatgta
      841 cgcagtcacc cagagagatt tgacttcagc gccactgtgt tgggtgtgga gagcttcacc
      901 tcagggcggc actactggga ggtggatgtg gaaaaggcaa cacagtggca gctgggcgta
      961 cacggaagct ctgccagcag acgtgcttcc ggagataagg tcttattcac aggatccatt
     1021 atgggaactg attatacttt ctgggctttt ccccctttaa aaagggtttc ctggagagag
     1081 caaatgcgca gagttggagt tttcctggac tataagtatg gccagatatc cttctatgat
     1141 gtgacaaaga gatccctcat ctataatttc tctgatctag ccttccaagg agctctcagg
     1201 cctgtatttt ctctttgtat ttcaaatgga ggcatgaatt cagactctct gagcatctgc
     1261 ctccctcatg tttcttcttg taatggtact tttagccctc aatcttcttt ggtgtga
//
LOCUS       XM_032618290            3382 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule-associated tumor suppressor 1
            homolog (LOC116746692), mRNA.
ACCESSION   XM_032618290
VERSION     XM_032618290.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3382
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3382
                     /gene="LOC116746692"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746692"
     CDS             203..3382
                     /gene="LOC116746692"
                     /codon_start=1
                     /product="microtubule-associated tumor suppressor 1
                     homolog"
                     /protein_id="XP_032474181.1"
                     /db_xref="GeneID:116746692"
                     /translation="MNDDNSDDKTEDELQSLFISDKNGNTYAYNQKSPRTQNSSTNNV
                     SWNSANPDDMVVDYETNSAVAFGENISLNPQCVEVLEHQKSSSDFVSKEMLDMHKDST
                     CLSFAHVVNTEEPKDLRNSCHSLESFQDQSVETSLPFVWNPNDDDLNCTENPTALALN
                     QTFDMKVDNVNCTFITHDTTGKSQSLPTTASLPPTSMRSRNTSSSCCVPPPSHSDKIY
                     VREMSYDRDSFENPQATASQAQDTTYTAFSDMVMQTDVVLPDTENHCHCSSGKVTSEY
                     PDGAQQRLGGEKEIQALTPVSDGMDVPSGSVLQEFFCSSKDEPNSERHSQSSYGQKEM
                     GQNVRETVSNCLIDDECPLLVPAFDKSKTQVLDPEHQVTVAKDTPVASNEKDLGTRNH
                     TIELIPNSPPGQKVVSSFELTWDADDMVISTNNIVCMSTPVLEPTNATFSLSPIEATE
                     KWSKVQKSNRELRRLPNLKGAPMNMSKPNLGKSTTKTNSPLGSKVRKTEIISYPRPNF
                     KNVKAKVVSRPVLPSKDPALSKAAPRPQLTGASSPSSVSSSRPSTALRKTPTSDLNAD
                     TKAEILNNKTHKQHFNKLITSQAVRVTTHSKNASHRVLRTTPAVKSNQEDVDKASSSN
                     SACETGSVAAVFQKIKGELPIKMESTECLQMSYTSNIDRISPENKGEKENGTLMAKQE
                     LKKEIMNETFDYGSLFLGSASKTATISGRSLAKPNCSILRKTPGPKAKVGPSVSCLRR
                     NSDSRNLNSDRAVSPQRIRRVSSSAGNNAVIKYEEKPPKPAFQNGSSGSLYLKPLVPR
                     AHVHLLKTPPKGPSRKGLYTALNAVEKGRQKSPRSLCIQTQTSPDVLSSEKTLELAQY
                     KTKCENQSGFILQLKQLLSRGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVNLRG
                     ELVTASTTCEKLEKARNELQITYEGFVQKLNQQHQTDLTELENRLKEFYTGECEKLQN
                     IYIEEAEKYKTQLQEQFDNLSAAHETSKLEIEASHSEKIDLLKKAYETSLSEIKKSHE
                     MEKKSLEDLLYEKQESLEGTTNHFKFKTA"
     misc_feature    <2744..>3346
                     /gene="LOC116746692"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 cgagcggagc ggagcgcggc gggagcctcc aaggccggtg tctcgaggga acaacaaatc
       61 atttcaagtt caagacagct tagactaaga aactttcaac tgtgctgaaa aacttaggag
      121 atggacacat tttgcttccc tctcatttaa aaggttttaa agaagaagta aaatggcaga
      181 ggtttaaagt taatatttca ggatgaatga tgataattca gatgacaaga cagaagatga
      241 actgcagtcc ttatttatca gtgataaaaa tggaaacaca tatgcataca accaaaaatc
      301 accacgtacc caaaactctt caaccaataa tgtgagttgg aattctgcca acccagatga
      361 catggtggtt gattatgaaa ccaactctgc tgtggccttt ggtgaaaata tttctttaaa
      421 ccctcagtgt gttgaagtac ttgaacacca aaagtcttca agtgattttg ttagtaagga
      481 gatgttagat atgcacaagg attccacatg tctgtctttt gcacatgttg taaatacaga
      541 ggaacccaaa gatttgcgta acagttgtca ttccctagaa tcatttcagg accagagcgt
      601 tgagacatct ctgccttttg tgtggaatcc taacgatgat gatttgaact gtacagaaaa
      661 ccctactgcc ttggcgctaa accagacatt tgacatgaaa gtggataatg ttaactgtac
      721 cttcataaca catgacacca ctggaaagag tcagtctttg cctaccactg caagcctgcc
      781 gccaaccagc atgagaagta gaaatacatc ttcatcctgt tgcgttcctc caccttccca
      841 ttctgataag atatatgtga gagaaatgag ttatgataga gacagcttcg aaaaccctca
      901 agctacagca tcacaggccc aagacacaac ttacacagca ttttctgaca tggtgatgca
      961 aactgatgtg gttcttccag atactgaaaa tcactgtcac tgttcttcgg gaaaggtcac
     1021 cagtgagtac ccagatgggg cacagcaaag actaggcgga gaaaaggaga tacaagctct
     1081 aacaccagtt tctgatggca tggatgttcc cagtgggtct gtattacaag agttcttttg
     1141 ttcatctaaa gatgaaccaa atagtgagag acattcacag agctcatatg ggcaaaagga
     1201 aatgggccaa aatgtaagag aaacagtgtc caattgtctt atagatgatg aatgcccttt
     1261 actggtgcca gcttttgata aaagcaaaac ccaagtgctg gacccagaac atcaagtcac
     1321 tgtggctaaa gacacaccag ttgcctctaa tgaaaaggac ttgggaaccc gaaatcatac
     1381 catagaattg ataccgaata gcccgccggg acaaaaggtg gtttcatcat ttgaactgac
     1441 ttgggatgca gatgatatgg tcattagtac aaataacata gtttgcatgt ccacgccagt
     1501 cctagaaccc acgaacgcaa ccttttctct ctcacctatt gaagcgacgg agaaatggag
     1561 taaagtgcag aagagtaatc gagagcttag acgtttaccg aacctgaagg gggcaccgat
     1621 gaacatgtct aaacctaacc taggaaaatc aaccaccaaa acgaatagcc ccctaggcag
     1681 caaagttaga aagactgaaa ttataagtta cccaagacca aacttcaaga atgtcaaagc
     1741 aaaagttgta tccagaccag tgctaccgtc caaggaccct gctctatcaa aggctgcacc
     1801 ccgacctcag ttaactgggg cctcatcacc ctcatcagtg tcttcctcaa gaccatcgac
     1861 agctttgaga aaaacaccaa catctgactt gaatgcagac acaaaagcag aaatcctaaa
     1921 taacaagaca cacaagcagc actttaataa actcattacg agccaggctg tgcgtgttac
     1981 aactcattct aaaaacgctt cacacagagt tctaagaaca acacctgccg tgaaatcgaa
     2041 tcaggaagac gttgacaaag caagttcttc caattcagca tgtgagactg ggtccgtggc
     2101 tgcagttttt cagaagatca aaggtgaact ccctattaaa atggaaagca cagaatgttt
     2161 gcaaatgtcc tatacttcca acatcgatag gattagccct gaaaacaagg gtgaaaaaga
     2221 aaatgggaca ctgatggcaa aacaagagct aaaaaaggaa attatgaatg agacctttga
     2281 ctatggttct ctgtttttgg gttctgcttc aaaaactgca accatctcag gtaggagtct
     2341 agccaagccc aactgctcca ttttgaggaa aacacctggt ccaaaagcca aagtgggacc
     2401 ttctgtttca tgtttgaggc ggaatagtga cagtagaaat ctcaactctg atcgagccgt
     2461 atctccccag aggataaggc gtgtgtccag ttctgctggt aataacgctg tcatcaaata
     2521 tgaggaaaaa cctccaaaac cagcatttca aaatggctcc tcaggatcct tatatttgaa
     2581 gcctttggta ccccgagctc acgtgcactt actaaaaacg cctccaaaag gtccttcaag
     2641 aaaaggtcta tatacagctt tgaatgcggt tgaaaagggc agacagaaga gtcccagaag
     2701 tttatgtatc cagacccaga catctccaga tgtgctctcc tcagaaaaaa cacttgagtt
     2761 ggctcagtat aaaacaaaat gtgaaaacca aagtggattt atcctgcagc tcaagcagct
     2821 tctttcccgt ggtaatacca agtttgaagc attaacagtt gtgattcaac acctcctgtc
     2881 tgagcgggag gaagcattga aacaacacaa aaccctatct caagaacttg ttaacctccg
     2941 gggagagcta gtcactgctt caaccacctg tgagaagtta gaaaaagcca ggaatgagtt
     3001 gcaaataact tatgaaggat ttgtccagaa gctaaaccag cagcaccaga ctgatctaac
     3061 agagctggag aatcggctta aagaatttta cactggggag tgtgaaaagc ttcagaatat
     3121 ctacatcgaa gaagcagaga agtacaaaac tcagttacag gagcagtttg acaacttaag
     3181 tgctgcccat gaaacctcaa agttggaaat tgaagcaagc cactcagaga aaatagactt
     3241 gctaaagaag gcctatgaaa cctccctttc agagatcaag aaaagccatg aaatggaaaa
     3301 gaaatcactt gaggatttgc tttacgagaa gcaggagtca ctagagggaa caacaaatca
     3361 tttcaagttc aagacagctt ag
//
LOCUS       XM_032618292            1126 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746697
            (LOC116746697), mRNA.
ACCESSION   XM_032618292
VERSION     XM_032618292.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 17% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1126
                     /gene="LOC116746697"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 83% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746697"
     CDS             1..1014
                     /gene="LOC116746697"
                     /codon_start=1
                     /product="uncharacterized protein LOC116746697"
                     /protein_id="XP_032474183.1"
                     /db_xref="GeneID:116746697"
                     /translation="MNRKHLSGSPVLRNRRLHLGRNPGRTRSGRSTLPQRPPVTPGDA
                     DWGRPLGRLWRRRRGLTSGPRSPGLAAGLRAARRPAERLGALFGECVRAVRARPRAVS
                     SAWARRPGGSCERGSAPSACGGAARPASAAPPESLPPPRAPRRRARSQAPIPPGDPRP
                     APPSRSGRRLRPQPETWRRPTPERAPFSTPLQGGPEGFCRGEFRCLKPSFSHDVRIAS
                     LGVPRSETGTKGVGIVVEQEKIRSCWSFGPYASGTFHGMEHGWAGWTAEDRELTQQTP
                     DLTGASPAEPALERFWRSPSRSSPPWLHLDAPGSLKKYSFLDSIPGGLIQVVWGRTPS
                     EVL"
ORIGIN      
        1 atgaatcgaa aacacctctc cggctccccg gtcctccgga atcggcgcct ccacctcggg
       61 cgcaacccgg ggcgcacgcg gtccggacgc tccaccctcc cccagcggcc gcctgtcact
      121 ccgggggacg ccgactgggg tcgcccgctc ggcaggcttt ggagaaggcg ccgcgggctc
      181 acctcggggc cgcgatcccc cggcctcgcc gctggtctcc gagccgcccg ccgccccgcc
      241 gagcgcctcg gagcattgtt tggagagtgt gtgcgcgcgg tccgtgcccg gccgcgggcg
      301 gtgtcgtctg cctgggcccg gcggccgggt ggcagctgcg agcgcggctc cgccccctcc
      361 gcctgcggtg gcgccgcccg cccagcctca gccgcacctc cggagtccct gccaccgccc
      421 cgcgcccccc gccggcgggc gcgctcccag gccccgattc ctcccggaga tccacgcccc
      481 gcccctccct cacgctccgg acggaggctc cgcccccagc ccgagacttg gaggcgtccg
      541 acccccgagc gagcgccctt ttccacccct ctccaaggag ggcccgaggg gttctgcagg
      601 ggcgagtttc ggtgtctaaa gccttccttt tcccatgatg tgcgcatagc atcccttgga
      661 gtaccccgct cagagactgg cacaaaggga gtgggtatcg ttgttgaaca ggaaaaaata
      721 agatcctgtt ggagctttgg cccttatgca tctggaacgt tccatgggat ggagcacggc
      781 tgggcagggt ggaccgctga ggacagagag ctgacccaac agacacctga tctgacagga
      841 gcaagtcctg cagaacctgc gctggagaga ttttggcggt cacccagccg cagttcacca
      901 ccctggctgc acctagacgc acctgggagc ttaaaaaaat attcgtttct ggattccatc
      961 cctggaggtt taattcaagt ggtctggggt agaactcctt ctgaagttct atgagaaaga
     1021 agagctaaat gtcacccatg actgcagacc tccctggggc cttgaagtca gtgcaggaga
     1081 tgaaacagca cctgcaggct gaacaggtaa cgttatgcaa aggtgt
//
LOCUS       XM_032618293             792 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 40S ribosomal protein S7-like
            (LOC116746698), mRNA.
ACCESSION   XM_032618293
VERSION     XM_032618293.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 28% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..792
                     /gene="LOC116746698"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 28 Proteins, and 31% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746698"
     CDS             1..792
                     /gene="LOC116746698"
                     /codon_start=1
                     /product="40S ribosomal protein S7-like"
                     /protein_id="XP_032474184.1"
                     /db_xref="GeneID:116746698"
                     /translation="MTVREYLLKETLGSVLEPTEERTLNQNREVACGSRLLTNRDFHP
                     AFSSQKFLLILLCLSVVAWALRVADVSKATFSSSVKIMKPNSKKLDEYELGIFQALLQ
                     LEMNPDLKAQLRKLNITAAKEIAVGGGRRAIIIFVPVPQLKPFQELQVQLVRELEKKF
                     SRKHVVFIAQRRILPKPTRKSHTKNKQKHPRSRILTAVHDAILEDLAFPSEIVGKRVD
                     GSRLIKVHLDKAQQNNVEHEVETFSGVYKKLTGKEDNFEFLEFQL"
     misc_feature    238..774
                     /gene="LOC116746698"
                     /note="Ribosomal protein S7e; Region: Ribosomal_S7e;
                     pfam01251"
                     /db_xref="CDD:460135"
ORIGIN      
        1 atgactgttc gggaatactt gttgaaggag acccttgggt cggtgttaga accaacagag
       61 gaaagaacat taaatcagaa tcgagaggtg gcctgcgggt cgaggttgct cacgaacaga
      121 gactttcacc ctgctttctc cagtcagaag tttcttttga ttttgctatg cttgagcgtg
      181 gttgcatggg cgcttagggt tgctgatgtc agcaaggcca cgttcagttc cagcgtgaag
      241 ataatgaagc ccaacagcaa gaagctggac gagtatgagt tgggcatctt ccaggccctc
      301 ctgcagctgg agatgaaccc ggacctcaag gcccagctgc ggaagctaaa catcacggct
      361 gccaaggaaa ttgcagttgg tggtggtcgg agagctatca taatctttgt tcccgttccg
      421 caactgaaac ctttccagga actccaggtc cagctagtgc gtgagttgga gaagaagttc
      481 agcaggaagc acgttgtctt tattgctcag aggagaattc tgcctaagcc aactcgaaaa
      541 agccatacaa aaaataagca aaagcatccc aggagccgca ttctgactgc cgtgcacgac
      601 gccatcctgg aggacttggc tttccctagt gagattgtgg gcaagagagt ggatggcagc
      661 cgactcataa aggttcattt ggataaagca cagcagaaca atgtggaaca cgaggttgaa
      721 acattttctg gtgtctataa gaaactcaca ggcaaggagg ataattttga attcctagag
      781 tttcagttgt aa
//
LOCUS       XM_032618294            9539 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus testis expressed 15, meiosis and synapsis
            associated (TEX15), mRNA.
ACCESSION   XM_032618294
VERSION     XM_032618294.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-41                VOSU01000013.1     24289443-24289483   c
            42-192              VOSU01000013.1     24267910-24268060   c
            193-358             VOSU01000013.1     24259138-24259303   c
            359-596             VOSU01000013.1     24248634-24248871   c
            597-743             VOSU01000013.1     24246135-24246281   c
            744-906             VOSU01000013.1     24245113-24245275   c
            907-8234            VOSU01000013.1     24233649-24240976   c
            8235-8293           VOSU01000013.1     24231737-24231795   c
            8294-8582           VOSU01000013.1     24228991-24229279   c
            8583-8583           "N"                1-1
            8584-8927           VOSU01000013.1     24228647-24228990   c
            8928-8928           "N"                1-1
            8929-9539           VOSU01000013.1     24228036-24228646   c
FEATURES             Location/Qualifiers
     source          1..9539
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9539
                     /gene="TEX15"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 39% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746699"
     CDS             54..9539
                     /gene="TEX15"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     substituted 2 bases at 2 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:8778..8780,aa:OTHER)
                     /transl_except=(pos:9072..9074,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: testis-expressed protein
                     15"
                     /protein_id="XP_032474185.1"
                     /db_xref="GeneID:116746699"
                     /translation="MEMKKTAKYKMLWKMNSTTEPLFVTGIDVNPLKKFTIPKIRRTA
                     EKVYLSPCCTNTREYNFIHDTLNQCRLDVSCDLQSSWQFGDTKLIHNEELEKNFTSKR
                     SEMRGSGRHGRELEEHFCFLALPQSDVAEIYQNGISTRTSTLKILGNPLLGIYIFRHV
                     DVALNFAHSRSVTVESIIIFKVLFGKVKKIQPSVDKNKVSLDPSPNFDCHMSRSVPSL
                     KDTIELQAYSSAVYFYEYNNLSKPVDKPRQCLPYAIVTVKFIGQKVDKGHLMTSLRLL
                     STGFPKRAERTWSLNNCTVAKRIGKGKDATVIFEHFRKPIDPFVQENCSCSALTSEIN
                     PYNSDISNSHGNVQNENISVLEAYSGQMEHNSAECRDTSQVHAYDSGPSFIPSDTRES
                     VNNDDLLNLTHLKDVLSGFAPAFPLHNNIGSSTVITSKHIKDPRLMKRKESMGKHNTI
                     TGLNEILPSEKSLDFANSEINLSSMPTNPASSSEVMPGDQTVLTNYLDAPCFKISLNE
                     SQTQAHNMGSKTYDCTAPSKITMTEQRESHDNSSFPMCVSNVVSEVEIQEHSGEKAQR
                     SQQRSNIPLLIEQNSEPRDSYESVNTCTKVYNSDVSPEPQSSNFKTVYQTGHQMPTLF
                     PLESKESICENIQDIGKMRNFTGPEDNSKREEKQNVWKSDHSSTNKTKISPVDSYISL
                     HQDDKENENLDYLVENCDQILITQGLEKPKSFSSTTEEKYELGHLVLEIQNHLTPRPE
                     NLSQKHPQHSLEYKDNVHTSFTISQKRMELKLEEPDQNCVSVMTDALQEAKDLRQAKQ
                     LPAVTSSHDIKTAHNANCSIAREHICVKRRNGNDPVSLANSERDCKENSQVNSKGQDH
                     TQFCNSQLNSDVHLNVDCREQRDNDKENQNEAEVEDIALSTENNIGNIHGDEKQSFHA
                     NKNFTTVDERRENKDYNSIEILSSEEFSTTFNLTWGKKHVSTESTLLENEGTVTAIDE
                     KDTGRTVEHLVSTTFPQVAGSSGHVASHAVVQVADAPVPALGTNLKDHQRYQFKETCS
                     SEGPDFGLLVKYRVSDCETDMDKNQLHNSFHQSVSDNSVLQSIKLDNKIEVGSERSDS
                     AFLFQQDAHSHGNVLYEDFGASYEALKSRIGWEGLLGSTNGETEVLKSTTRRENSDQR
                     CSEGSSFYFSTAKNKAELFNPILLPDLEIRITNVFMQGFSSAVESLALKDNSSKYRTE
                     AIKSEIKEEEEEEVPRFEIHSQCSGENSHHPSEGEFGNVRQESGLVSKSETSLSEKQN
                     KGPLLTEPSNVTTVNNESRRSFTKSKTDCYDTGSKKDTESRISQRKPHTPFRDQSIPH
                     KDLRHHEICGNRRRLTSQDLSERFSSLSQGRIETFSRSEKHIRSVPDILTSEASLCKR
                     RCLSRKLDGAVRHLKKAHRRVHTSLQLIAKVGEKRKGPLPKAYTVICNNFWESCDLEG
                     YSSVSERRYYSTKQFLSKRKYDKPGEKRALGFEVDKSLTHVSNHKSYKTSGERVTKCL
                     SEKNVPGVSRSPTTIRVRGCCDREYPESQLALCSRSQSTSQSAYSTSSLRNPRSSELQ
                     PFSRKTGCPSSPDCPDEKLTKRENQIDAEFLSNVSKYEKLKNHSARGNIKGTTKENNS
                     EANEVISKRNSASLTCIKESNINFGVDKNYDATCIAHAKVKTDTVNSVLESGVTHAFN
                     IDINKPNNLILSGYTRNLEVNFPIEKWTAPNESSKPGIITGNFLMDPLNLTLIKSKKC
                     NIIPQLLSATLVTDSEGESSQSYLNKQSIFAVDSSAVSTVVPHCQQGCAGKELLKTEH
                     SSSSNCFRIDGKGTNVIENSELDFTSVSEESKDNMMKKLFSHDSFLLLKDNIKGSSSP
                     KYIAKKDIQDRRMWKDKQAEKAKDSFHKTVAEGSSVKTEYKNQKNKTLEESSYLSEKT
                     VKDSLIDSHLSIKGASEAVSLSNTASNQLNKRKKEEGKVSHDSQSDSTVHSGRACNSK
                     PGIKGMNHMPLLHAHSETSNVSPPPKMPTSYMNELKEEHCFTNNLAPIAKIAQILKRA
                     DEASSLQILQEETKVCQNILPLFVEAFERKQECSFKQILISRDLLVEQNLWYNCRRKL
                     KPCALDSLVELQMMMETIQFIENKTRLLGGEPTFRSLLWYDETLYSELLGRPRGFQQQ
                     SNFYPAFQGRLKYHAFCELQNYHDQLVEVFEETKREISSYYMFLKYKRQINECEAVMK
                     HCSDCFDFSLSVPFTCGVNFGDSLGDLESLRKSTLNLINIYGDSPQKDSCPGKQDHLW
                     IIIELISSKVNFIKSNEAVSIKISLYGLEHIFFDAAKSLVWKEKRESFGKKYSGKNSK
                     EILLKINQHAFSKLQKICDTSSKGLSSERVSSTGLENTMIASRKSNALVNKATISIEN
                     SRFNSTLLSHPDICCISEILDQAEFADFKKLQELTLRCTDHLEILKKYFQLLQEDNID
                     NIFITQENVLDMVKNHNHEAVILKPAAIETYIEIVMLSETVHFLKNSMAKKLDKQRFR
                     GMLWFDLSLLPELVQCQEEMTSFSFLKDNSTDCLWKVIETAISELKNDLDIIYKYNEA
                     VNCSYALHLLSRELEELSEIKTLLKKSKYSLSTYIDFVPCIASINYGSTVTELEYNYN
                     QFSTLLKNVMAAPRKDLGKMAHVMKVMKTIEDMKIICAKNAKLTISFILCQMRHNRKK
                     TLHLERKEEMNIHVKPRKNINKSSTCVKVPSVSQCIMKNVSNSSKKRPFTVDKCEDPQ
                     EQEENTTVSSCKKQKVNMKDVTKINREKATFKHPRTMRSHPESENEIGPSSSDNLKRN
                     HVSPKKVEIQLSLPGSLLPLKNLKDTCMSKLEGKIDLTNISSATSEDFSGQQGSLNNM
                     KERNVNFSVAETKSDXDCSPLAISDQKRVDGTLSKDQETTSQKFLKNSSDPAEKSCLS
                     DIKPETDASLLPNASVLSKPIFXFVRDINTNLEMHDTDFEPQDNEILNSSIKNSKCTS
                     SPEPIHVQNKIPVLXNKTQPAKTESKEKHRKDTLNSSTTPVEASENMTLNVNQTVEHS
                     FSEQXNSKVLTQNAATYWNEIPQSACTPVYNSSEQSFGTSHPYSASCVYHYSSSNGSS
                     ITPTYQGITSYEVQPPPFGMLTAVTSTVQNTHSNLLYSPYFGYFAGERQANDFVPVSG
                     HFQSQMPVYNFQQPVFSQYVYYQPVTAYPCSPDLKVLPEVPWT"
     misc_feature    363..806
                     /gene="TEX15"
                     /note="Protein of unknown function (DUF3715); Region:
                     DUF3715; pfam12509"
                     /db_xref="CDD:463613"
     misc_feature    5841..6539
                     /gene="TEX15"
                     /note="Testis expressed sequence 15; Region: TEX15;
                     pfam15326"
                     /db_xref="CDD:464647"
     misc_feature    <7191..7535
                     /gene="TEX15"
                     /note="Testis expressed sequence 15; Region: TEX15;
                     pfam15326"
                     /db_xref="CDD:464647"
ORIGIN      
        1 cctgatcata accatatgac ggtacattcc attgaagagt ggccaccagc aaaatggaaa
       61 tgaaaaagac tgctaaatac aagatgctat ggaaaatgaa ctcaactact gaacctttat
      121 ttgttactgg tatagatgtc aatcccttga aaaaattcac cattcccaag atcaggagga
      181 cagctgagaa agtttacttg tcaccttgtt gcaccaatac tagagagtat aatttcatac
      241 acgatactct taatcagtgc cggcttgatg taagctgtga tctacagtct tcatggcagt
      301 ttggagatac aaaactgatt cacaatgaag agctggaaaa aaattttact tctaagaggt
      361 cagagatgcg tgggagtgga agacacggca gagaacttga agaacatttc tgctttttag
      421 cacttcctca gagtgatgtg gctgagatat atcagaatgg aataagtacc agaacatcta
      481 cattgaagat actaggcaac cctcttcttg gaatttatat atttagacat gttgatgtgg
      541 ccttgaattt tgctcacagt agaagcgtta ctgtagaaag tattataatt tttaaggttc
      601 tttttggaaa agtgaagaaa attcagcctt cagtggataa aaacaaagtt tctttggatc
      661 cttctcctaa ctttgactgc catatgtcaa gaagtgtccc ctctttgaaa gataccattg
      721 aactacaagc ctacagttca gcagtatact tctatgaata taataatctt tcaaagccag
      781 tagataaacc taggcagtgt cttccatatg caatagtaac agtaaaattt attggtcaaa
      841 aagtagataa aggacacctt atgacatctt tgagactcct ctcaacagga tttcctaaga
      901 gggctgaaag aacatggtct ctgaataact gtacagtggc caaaagaatt ggaaaaggaa
      961 aagatgctac tgtcatcttt gagcatttca ggaaacctat agatccattt gttcaggaaa
     1021 actgttcatg cagtgcacta acttcagaga taaatcctta caactcagat atttctaact
     1081 cccatggaaa tgtgcaaaat gaaaacattt ctgtacttga agcatacagt ggacagatgg
     1141 agcacaattc agcagaatgt agagacactt ctcaagtaca tgcatatgat tcaggtcctt
     1201 catttattcc cagtgatacc agagaaagtg ttaataatga tgacctctta aatttgacac
     1261 atcttaaaga tgttttaagt ggttttgctc ctgcttttcc ccttcataac aatattggct
     1321 caagcacagt tattacttca aaacacatca aagacccaag actgatgaag agaaaagaaa
     1381 gcatgggaaa acataatact attacaggtt taaatgagat cttgccatcg gagaagagtt
     1441 tagattttgc taattcagaa ataaacctat catctatgcc aactaatcct gcctcgtcat
     1501 ctgaagtcat gcctggtgat cagactgttc ttactaatta tttggatgcc ccttgcttca
     1561 aaatttcttt gaatgagtca caaacccagg ctcacaacat gggctctaag acctatgact
     1621 gtacagcgcc cagtaaaatc accatgacag aacagcgtga gagccacgac aattcttcct
     1681 tcccaatgtg tgtgtcaaat gtagtctcag aagttgaaat ccaagaacac agtggagaaa
     1741 aagctcagag atcccagcag agaagcaaca ttccactttt aattgaacaa aatagtgagc
     1801 cacgtgactc ttacgaatca gtgaatactt gtacaaaagt atataatagt gacgtctctc
     1861 cagaaccaca gtcttctaat tttaaaactg tatatcagac tggtcaccaa atgcctacgc
     1921 tttttccgct cgaaagcaaa gaaagcatat gtgagaacat tcaagatatt ggaaagatga
     1981 gaaacttcac tgggccagaa gacaattcca aacgtgaaga aaagcaaaat gtatggaaaa
     2041 gtgatcattc ttctactaat aaaacaaaaa tcagtccagt agatagttac atttctttgc
     2101 atcaagacga caaagagaat gagaatcttg attatttggt ggaaaattgt gatcaaatat
     2161 taattactca agggttagaa aagccaaaat ctttctcatc taccacagag gagaagtatg
     2221 agctaggtca cctagtattg gaaatacaaa atcatcttac tccaagaccg gagaaccttt
     2281 cacaaaagca tcctcagcac tctttagagt acaaagataa cgttcataca agttttacca
     2341 tttctcaaaa acgaatggaa ctgaaattgg aagaaccaga tcaaaactgt gttagcgtta
     2401 tgactgatgc tttgcaggaa gcaaaagacc ttcgccaggc caaacaactg ccggctgtta
     2461 cttcatctca tgacattaaa acagctcata atgcaaattg cagcatagct agagaacata
     2521 tatgtgttaa aaggagaaat ggaaatgatc cagtgtcctt agcgaacagt gaaagagact
     2581 gcaaagaaaa ttctcaagtt aacagtaaag gtcaagatca cactcagttc tgtaattcac
     2641 agttgaacag tgatgtgcac ctgaatgttg attgcagaga gcagagagat aatgataaag
     2701 aaaaccagaa tgaggctgaa gtggaagaca ttgctttgtc tacagaaaac aacataggga
     2761 atatacatgg agatgagaag cagagttttc atgcaaacaa aaattttacc actgtagatg
     2821 aaaggaggga gaataaagat tacaatagca tcgaaattct gagttctgaa gaattttcta
     2881 ctacatttaa tttgacttgg ggaaaaaaac atgtgtccac agaatctaca ttattagaaa
     2941 atgaaggtac cgtaactgcc atagacgaaa aagatactgg aaggactgta gagcatttgg
     3001 tttccacaac atttccccag gttgcaggtt cttcagggca tgtagcctca catgctgtag
     3061 ttcaggtagc tgatgctcca gtgccggcgt taggcacaaa cctcaaagat caccaaagat
     3121 accagtttaa agaaacttgt tcttctgagg gtccagattt tggtttgtta gtaaaatata
     3181 gggtttctga ttgtgaaaca gatatggata aaaatcaatt acacaactca tttcatcagt
     3241 cagtaagtga caactcagtt cttcaaagca tcaaattgga taataagatt gaagtaggat
     3301 cagaacggag tgacagtgct tttctatttc aacaggacgc tcatagccat ggaaatgtac
     3361 tctatgaaga tttcggggcc tcatacgagg ctctgaagtc tcgcatcggt tgggaaggtc
     3421 tgttaggaag cactaatggg gagacagaag ttttgaaaag caccacaagg agggagaata
     3481 gcgatcagcg ttgctctgag ggaagtagtt tttacttctc tacagcaaaa aacaaagcag
     3541 agctcttcaa cccaatttta cttcctgatc tagaaattag gattactaat gtatttatgc
     3601 aagggttcag ctctgctgtt gaatcccttg cattgaaaga taattccagc aaatatagaa
     3661 ctgaagccat aaaatcagaa ataaaggagg aggaggagga agaagttcca cgatttgaaa
     3721 ttcattccca gtgttctggt gaaaattcac atcatccatc agaaggtgaa tttggtaatg
     3781 taaggcaaga atcaggacta gtgagtaaat ctgaaacctc actttctgaa aagcaaaaca
     3841 agggaccttt gcttactgaa ccttctaatg tcacaacagt aaataacgaa agcaggcgtt
     3901 cctttacaaa gtcaaaaacc gattgttatg atactggaag taaaaaggac acagaatcaa
     3961 gaattagcca aagaaagcca catacacctt ttagggacca gagtatacca cataaagatt
     4021 taagacatca cgaaatttgt gggaatagga ggaggctaac cagtcaggac ttgtcggaac
     4081 gtttttcttc attatcccaa ggacgaattg aaaccttttc acggtcagaa aaacacatta
     4141 ggagtgtccc ggatattcta actagtgaag catctttatg caaaaggaga tgtctttcca
     4201 gaaaacttga cggagctgtt cgtcacttaa aaaaagctca cagaagagtt cacacgtctt
     4261 tgcagcttat agctaaagtg ggagaaaaga gaaagggccc tttaccaaaa gcctatacag
     4321 taatatgcaa taatttctgg gaaagttgtg accttgaagg ttatagttct gtgtctgaaa
     4381 gaagatatta ctccactaag caatttttgt caaaaagaaa atacgacaag cctggagaga
     4441 aaagggcttt gggatttgaa gttgataaat cattaactca tgtatcaaac cacaagtctt
     4501 ataaaacaag tggagagaga gtcacaaagt gcctttctga gaaaaatgtg cccggtgtct
     4561 ccaggagtcc caccactatt cgcgtgagag gatgttgtga tcgagagtat cctgaatcac
     4621 agttagccct ctgctccagg tcccaaagta caagtcagtc agcttatagc actagcagtt
     4681 tgagaaatcc cagatcatca gaacttcagc ccttttctag aaaaactggg tgtccctctt
     4741 ccccagactg cccagatgag aaactaacta aaagagaaaa tcaaatcgat gcagagtttt
     4801 tatctaacgt tagtaaatac gaaaagctta agaaccattc agcacgtggt aatattaagg
     4861 gtacaacaaa agaaaacaat tctgaagcta acgaagtaat aagtaaaagg aattcagcat
     4921 ctttaacttg cataaaagaa agcaacataa attttggtgt ggacaaaaat tatgatgcaa
     4981 cttgtatagc ccatgcaaag gtgaaaactg atacagttaa ttcagtctta gaatcaggtg
     5041 tgacgcatgc ttttaatatt gatatcaaca aaccaaataa ccttatttta tctggttata
     5101 caagaaacct ggaagtaaat tttcctatag aaaaatggac agctcctaat gagagctcca
     5161 aaccaggcat tattacagga aacttcctta tggacccatt aaatctaact ctgataaaaa
     5221 gcaaaaagtg taacattatt cctcaattgt tatcagccac tctagtgaca gacagtgagg
     5281 gagaatcttc acaatcttac ctgaataaac agagcatttt tgctgtagat tcttcagcag
     5341 tgtctaccgt tgtaccacac tgtcaacaag gatgtgctgg aaaggagctg ctaaagacag
     5401 aacattcctc ttcaagtaat tgcttccgca tagacgggaa gggaacaaat gttattgaga
     5461 attctgagtt ggatttcaca tcagtaagtg aagaaagtaa ggacaatatg atgaagaaac
     5521 tattttccca tgatagtttt ctgctcttaa aagataacat aaagggttct tcttccccaa
     5581 aatatattgc aaagaaagac attcaggaca gaagaatgtg gaaagataaa caagcagaga
     5641 aagcaaaaga ttcatttcac aaaaccgtgg ctgaaggatc aagtgttaag actgagtaca
     5701 aaaatcaaaa gaataagaca ttagaagaat cctcctactt aagtgagaaa acagtgaaag
     5761 acagcttgat cgattctcat ttaagcatta aaggtgcttc tgaggcagtc tctttgagta
     5821 acactgcttc taatcagctt aacaaaagaa agaaagagga gggaaaagtt agtcatgact
     5881 ctcagtctga ctccacagtg cactcaggaa gagcctgtaa ttccaaacca ggcattaaag
     5941 gaatgaatca tatgcctctt ctacatgccc actctgaaac ctccaacgtc tctcctcctc
     6001 cgaagatgcc tacatcatac atgaatgaat taaaagaaga acactgcttc actaataatt
     6061 tggctcctat agctaagata gctcaaattt tgaagagggc agatgaagca tcatctttgc
     6121 agattctaca ggaagaaact aaagtttgtc aaaatattct ccctttattt gttgaagctt
     6181 ttgaaagaaa acaagagtgt tcatttaaac aaatcttgat ttcaagagac ctgttggtag
     6241 aacaaaacct gtggtataac tgcagacgca aattaaaacc gtgtgctctt gactccttgg
     6301 tagaacttca aatgatgatg gaaactattc agttcattga aaacaaaaca cggctcttag
     6361 gaggtgagcc aacattccga agcttgcttt ggtatgatga gacattgtac agtgagctgc
     6421 ttggcagacc acgtgggttt caacaacaat ccaacttcta tcctgctttt caaggcaggt
     6481 taaaatatca tgcattctgt gagttgcaaa actatcatga tcagttggtt gaagtgtttg
     6541 aagaaaccaa aagggaaatc agttcatact acatgttctt aaaatacaaa cgacagatta
     6601 atgagtgtga ggcagtaatg aaacattgtt ctgattgctt tgacttttct ctttctgttc
     6661 catttacctg tggagttaac tttggagata gtttgggaga cctagaatcc ttgagaaaaa
     6721 gtacattaaa tctgatcaat atatatgggg actctcccca aaaagattcc tgtccaggaa
     6781 aacaagacca tctatggatt attatagaat tgatctcctc aaaagttaat tttatcaaga
     6841 gcaatgaggc agtaagtatt aaaatatctc tttatggtct ggaacatatc ttttttgatg
     6901 ctgcaaaaag tcttgtttgg aaagaaaaga gagagtcttt cggcaaaaaa tactcaggaa
     6961 agaacagcaa agaaatacta ctcaaaataa atcaacatgc tttttctaag ttgcagaaga
     7021 tatgtgatac gtcgtctaaa ggtttaagca gtgaacgcgt ttccagtact gggcttgaga
     7081 atactatgat tgcttccaga aagtcaaatg ctctagtaaa caaagcaaca attagcatag
     7141 aaaactctag gtttaacagt actttgcttt cacatccaga tatctgttgt attagtgaaa
     7201 tattggatca agctgaattt gcagacttta aaaaactaca ggaactcact ttgagatgta
     7261 ccgatcactt agaaatttta aaaaaatact ttcagttact gcaagaagat aacatagata
     7321 atatttttat cacacaagaa aatgttttgg acatggtgaa aaaccacaac catgaggcag
     7381 taattttaaa acctgcggcc attgaaacct atattgaaat cgtcatgctc tcagaaacag
     7441 ttcactttct taaaaactca atggcaaaga aactagacaa acagaggttt cgaggtatgc
     7501 tttggtttga tttgtcactt cttcctgaac tggttcagtg ccaagaagaa atgacttctt
     7561 tctcatttct taaagataat tcaacagatt gtctttggaa agtgatagag actgctattt
     7621 ctgaacttaa gaacgatctg gatattatct acaaatataa tgaagctgtt aattgctcct
     7681 atgctcttca tttgctctca agagaacttg aagaactttc agaaataaaa acacttctaa
     7741 agaagtctaa gtattctctt tccacgtaca ttgactttgt gccatgtata gcatccataa
     7801 attacggaag cactgtgaca gagttagaat acaactacaa tcagttttcc accctgctca
     7861 aaaatgtgat ggctgcccct cggaaggact tagggaaaat ggcccatgtt atgaaagtca
     7921 tgaaaactat tgaagatatg aagataatat gtgctaaaaa tgctaaatta accatttcct
     7981 ttatcctgtg ccaaatgcga cataacagaa agaagacttt gcacctggag agaaaggaag
     8041 aaatgaatat tcatgtaaaa cctaggaaga atatcaacaa gtccagtact tgtgtgaagg
     8101 tgccctcagt ttcacagtgc ataatgaaaa acgtttcaaa ttcctctaaa aaacgacctt
     8161 tcactgtaga caagtgtgaa gaccctcagg aacaagagga aaatactacc gtttccagtt
     8221 gtaaaaaaca aaaggttaac atgaaagatg tcacaaaaat caacagagaa aaggcaacat
     8281 tcaagcatcc aaggactatg agatctcatc ccgaaagtga aaatgaaata ggaccaagtt
     8341 catctgacaa tctgaaaaga aaccatgtct ctccaaaaaa agttgaaatt cagctatcac
     8401 tgcctggctc acttttacct ttaaagaacc taaaagacac gtgtatgtca aagttagagg
     8461 gcaaaataga tttaactaat atttcatctg ctacttcaga agattttagt ggacaacagg
     8521 gaagcttaaa taacatgaag gaaagaaatg taaattttag tgttgctgaa acaaaaagtg
     8581 atnaagattg ttctcctttg gcaatttctg accaaaaacg tgtagatggc acactttcaa
     8641 aagaccagga gacaacttct cagaaatttc ttaagaattc ctcagatcct gcagagaaat
     8701 cttgtctctc agacataaaa ccagaaactg atgcttctct tctgcctaat gcatcagtgc
     8761 tctcaaagcc tattttctaa tttgtgaggg atatcaatac caatttagaa atgcatgaca
     8821 ctgactttga acctcaagat aatgaaatat taaattcatc cattaaaaat tctaaatgca
     8881 ccagttctcc agaacccata catgtccaga acaaaattcc tgttctgnca aataaaacac
     8941 aacctgcaaa aactgagtca aaagaaaaac ataggaagga tacattgaat tccagtacta
     9001 cacctgttga agcatctgag aacatgaccc ttaacgtgaa tcaaacagta gaacactctt
     9061 tttctgaaca atagaattca aaagttttaa ctcagaatgc tgccacatat tggaatgaaa
     9121 ttccacagtc tgcatgtacc ccggtatata attcttctga gcagtcattt ggaacttcac
     9181 atccttactc tgcttcgtgt gtttatcatt acagcagcag caatggcagt tccattaccc
     9241 cgacatacca gggaataaca tcctatgaag tacagccacc tccttttggg atgctgactg
     9301 cagttacaag tactgttcaa aatacgcatt ctaatctttt gtactctcca tattttggtt
     9361 actttgctgg ggaacgacaa gcaaacgact ttgtgccagt gagtggacat tttcaatctc
     9421 aaatgcctgt ttacaatttt cagcagccag ttttttcaca gtatgtttac tatcaaccgg
     9481 tcactgcata cccttgctct cctgatttga aggtgcttcc agaagttcct tggacttaa
//
LOCUS       XM_032618296            2289 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADAM metallopeptidase domain 32 (ADAM32),
            mRNA.
ACCESSION   XM_032618296
VERSION     XM_032618296.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2289
                     /gene="ADAM32"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 75% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746704"
     CDS             1..2190
                     /gene="ADAM32"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 32"
                     /protein_id="XP_032474187.1"
                     /db_xref="GeneID:116746704"
                     /translation="MFRLVMLLAGLRGLLMSRPGKPEDALFVTPNSFLQIIFPEKIQA
                     NTSDNSKVENEQVSYIIPIDEIPYTVHLRQRFFLADNFMLYLYNQGSVNSHSSNIQTQ
                     CYYQGYIEGYLNSVVTLSTCSGLRGILQFENLSYGIEPLESAVEFQHLLYKLGNENNE
                     FAVLTENNQDTEQNPMDYNIFISEKPESAVPDLIPLYLEMHIVVDKVLYDYLGSDSML
                     VTNKVIEIIGLVNSMFAPFKITIVLSSLELWSDKNKISTVGEADELLHTFLEWKKSYL
                     TLRPHDIAYLFIYRDYPDYVGAAFPGKMCVTSYSAGIALYPKGITLEAFSIIVTQMLG
                     LSLGISYDDPRKCRCSGAICIMSPKAMQSSGVKTFSNCSLSDFENFISNMGAQCLQNK
                     PQMQRAPAAICGNGRVEGNEICDCGTEEQCGPDSCCNPQTCVLKPNTQCDRGSCCNNC
                     QLMQAGAVCRPAAHPECDVSEVCNGSSGSCPADITIHNGHKCKGGKAFCFDGGCQDLD
                     AHCESIYGKGSKNAPFACYEEIQSQTDRFGNCGRERSRYKFCAWRNLICGRLICTYPF
                     KTPFLRDGASVIYAFVRNTVCITMHYTTTGGEDPMVVKNGSICDTGRICVNRECVESR
                     ILADRSNKCSLKCNGHGVCTSEMTCNCSSGYSPPDCQARSRIPSRLPGGQGLIKERGF
                     EKAGKKQWLLGIYIALPVLVVATIVAVSWKPLKKWFSKKEEPQSSDN"
     misc_feature    103..456
                     /gene="ADAM32"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    589..1173
                     /gene="ADAM32"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(991..996,1003..1005,1021..1023)
                     /gene="ADAM32"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1225..1449
                     /gene="ADAM32"
                     /note="Region: Disintegrin; pfam00200"
                     /db_xref="CDD:459709"
     misc_feature    1462..1869
                     /gene="ADAM32"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 atgttccgcc tagtgatgtt gctagcgggg ctccgtggct tgctaatgtc gagacccggt
       61 aagcccgagg atgccctgtt tgttactccg aattcatttc tacaaattat atttccagag
      121 aaaatccaag caaatacaag tgataattca aaagtagaaa atgaacaggt atcctatatt
      181 attccaatag atgagatacc gtataccgtg caccttaggc aaagattttt tttagcagat
      241 aatttcatgc tttatttgta taatcaagga tctgtgaatt ctcattcttc aaatattcag
      301 actcagtgct actaccaagg atatattgaa ggatatctga attctgttgt cacacttagc
      361 acgtgctctg gactgagagg aatattgcag tttgaaaatc tttcttatgg aattgagcct
      421 ctggaatctg cagttgaatt tcagcatctt ctttataaat taggaaatga aaacaatgaa
      481 tttgcagttc ttaccgaaaa taaccaagac acagaacaaa acccaatgga ctataatatt
      541 tttataagtg aaaaaccaga atcagctgtt ccagatttaa ttcctcttta tctagaaatg
      601 catatcgtgg tggacaaagt tttgtatgat tacctgggct ctgatagcat gttggtaaca
      661 aataaagtca tcgaaattat tggccttgta aattcgatgt ttgcgccatt taaaattact
      721 attgtgctgt catctttgga attgtggtca gataaaaata agatctctac tgttggtgag
      781 gcagatgaat tattgcatac gtttttagaa tggaaaaagt cttatcttac cctaaggcct
      841 catgatattg catatctatt catctataga gattatccag attatgtggg agcagcattt
      901 cctggaaaga tgtgtgttac cagttattct gcaggaattg ctttgtatcc caaggggata
      961 actttggagg cattttcaat tattgtcacc cagatgctgg gactcagtct gggcatatca
     1021 tatgatgacc caaggaaatg tcgatgttca ggagccatct gcataatgag tccaaaagcc
     1081 atgcaatcca gtggtgtgaa gacttttagc aattgcagtt tgagtgactt tgaaaatttc
     1141 atttcaaata tgggtgccca gtgtcttcag aataagccac aaatgcagag ggctccggca
     1201 gcaatctgtg gaaacggcag agtggaggga aatgaaatct gtgactgtgg tactgaggaa
     1261 caatgtggac ctgatagctg ttgtaatcct caaacttgtg tgctgaaacc aaatacacag
     1321 tgtgatagag gatcatgctg caacaactgt caacttatgc aagcaggtgc tgtatgtagg
     1381 cccgctgcgc atcctgaatg tgatgtttct gaggtttgta atggaagctc aggaagctgt
     1441 ccggctgata taactataca caatggacac aaatgtaaag gaggaaaagc tttttgtttt
     1501 gatggaggct gccaagatct tgatgcacat tgtgagagca tatatggaaa aggttcaaaa
     1561 aatgctccat ttgcctgcta tgaagaaata cagtctcaaa ctgataggtt tgggaactgt
     1621 ggtagagaaa gaagcagata taaattttgt gcatggagga atcttatatg tggcagatta
     1681 atttgcacct acccctttaa aactcctttc cttcgagacg gtgcttctgt gatttatgct
     1741 tttgtacgaa atactgtatg tataactatg cactacacaa cgacaggtgg agaagatcca
     1801 atggtggtca aaaatggctc tatttgtgat actgggagga tttgtgtaaa tcgtgaatgt
     1861 gtagaatcaa ggatacttgc agacagatca aataagtgtt cactaaagtg caatggacat
     1921 ggagtgtgca cttctgagat gacgtgcaac tgttctagtg gctacagccc tccagattgc
     1981 caagcgcgct ccagaatacc ttccagattg cctgggggac agggtttaat caaggaaaga
     2041 ggttttgaga aggctgggaa gaagcagtgg cttttgggta tctacattgc tttacctgtt
     2101 ctcgtcgtag caaccatagt agctgtttca tggaagcctt tgaaaaagtg gttcagcaag
     2161 aaagaggaac cccaaagtag cgataactaa taattccttc agaaggcaat ggatattact
     2221 ggggatctcg ctgagaaatg aaaatgcagc cttttctccc ctggtcacaa ctgaaggaaa
     2281 caataaacc
//
LOCUS       XM_032618297             774 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NK6 homeobox 3 (NKX6-3), mRNA.
ACCESSION   XM_032618297
VERSION     XM_032618297.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..774
                     /gene="NKX6-3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins"
                     /db_xref="GeneID:116746705"
     CDS             1..774
                     /gene="NKX6-3"
                     /codon_start=1
                     /product="homeobox protein Nkx-6.3"
                     /protein_id="XP_032474188.1"
                     /db_xref="GeneID:116746705"
                     /translation="MESNLQGPFLLNNAPLAQFSEVKAPVCQYSVQNSFYKLSAQGLG
                     PQLPAGTPHGITDILSRPVAAPNSSLLSGYAHVAGFGGLGSQGVYYGPQVGNFSKAGN
                     EYPTRTRNCWADTGQDWRGGRPCDNTPDPLSDSIHKKKHTRPTFTGHQIFALEKTFEQ
                     TKYLAGPERAQLAYSLGMTESQVKVWFQNRRTKWRKKSALEPSSSTPRASGGDRAASE
                     NDDDEYNKPLDPDSDDEKIRLLLRKHRAAFSVLSLGAHG"
     misc_feature    412..588
                     /gene="NKX6-3"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 atggagtcca acctgcaggg cccgttcctg ctgaacaacg cgccgctggc tcagttctcg
       61 gaggtgaagg cccctgtgtg ccagtactct gtgcagaact ccttctacaa gctcagcgcc
      121 caggggctgg gcccccagct gcccgccggg accccgcacg ggatcacgga catcctcagc
      181 aggcccgtgg ccgcgccgaa cagcagcctc ctctccggct acgcccacgt ggccggcttc
      241 ggtgggctcg gctcccaggg ggtctactac ggtccccagg tggggaattt ctccaaggcg
      301 gggaacgagt accccacccg gacccggaac tgctgggcgg acacgggcca ggactggcga
      361 ggtgggcggc cgtgtgacaa caccccggac cccctgagcg acagcattca caagaagaag
      421 cacacccggc ccaccttcac agggcaccag atctttgccc tggagaagac cttcgagcag
      481 accaagtact tggcgggtcc cgagagggcg cagctggcat actcgctggg gatgaccgag
      541 tcgcaggtca aggtgtggtt ccagaaccgg aggaccaagt ggcggaagaa gagtgccctg
      601 gaaccctcgt cctccacgcc ccgggcctcc ggaggggacc gcgcggcctc ggagaatgat
      661 gacgacgagt acaacaagcc gctggacccc gactcagacg atgagaagat ccggctgctg
      721 ctccggaagc accgcgccgc cttctccgtg ctcagcctgg gcgcgcacgg ctga
//
LOCUS       XM_032618299             756 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dickkopf WNT signaling pathway inhibitor
            4 (DKK4), mRNA.
ACCESSION   XM_032618299
VERSION     XM_032618299.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 14% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                VOSU01000013.1     33495737-33495781   c
            46-46               "N"                1-1
            47-108              VOSU01000013.1     33495675-33495736   c
            109-259             VOSU01000013.1     33494504-33494654   c
            260-390             VOSU01000013.1     33493939-33494069   c
            391-412             VOSU01000013.1     33493916-33493937   c
            413-756             VOSU01000013.1     33492699-33493042   c
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..756
                     /gene="DKK4"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins"
                     /db_xref="GeneID:116746706"
     CDS             1..756
                     /gene="DKK4"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: dickkopf-related protein 4"
                     /protein_id="XP_032474190.1"
                     /db_xref="GeneID:116746706"
                     /translation="MVVLVLLRLGWLCAPXGALVLDVNNKSSVDAQGARKGSQCMSDK
                     DCDTRKFCLKPQDEKPSCATCRGLRRWCQRAAVCCPGTLRVNDVCTAMEDATPILERQ
                     IDDQDDTDTQGTNEHSIQENKPKRKPNIKKSQGSKGQEGESCLRTFDCGPGLCCARHF
                     WTKICKPAPLEGQVCSRRAHKDAAQAPEIFQRWGCGPGLSCRSQATGNQRNSRVRVWP
                     EDLNSCTSSSRSLRQELKNLPIQITLKIKSCSK"
     misc_feature    106..270
                     /gene="DKK4"
                     /note="first cysteine-rich (Cys-1) domain of
                     Dickkopf-related protein 4; Region: Dkk4_Cys1; cd23013"
                     /db_xref="CDD:438007"
     misc_feature    379..648
                     /gene="DKK4"
                     /note="second cysteine-rich (Cys-2) domain of
                     Dickkopf-related protein 4; Region: Dkk4_Cys2; cd23275"
                     /db_xref="CDD:438001"
     misc_feature    order(418..420,436..438,475..483,487..492,517..522,
                     526..546,550..552,574..576,598..603,637..645)
                     /gene="DKK4"
                     /note="putative LRP5/6 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:438001"
ORIGIN      
        1 atggtggtgt tggtcctgct gcggcttggc tggctgtgcg cccccncggg agccctggtt
       61 ctggatgtca acaacaagag ctctgtggat gcgcaagggg cccggaaggg ttcacagtgc
      121 atgtctgaca aagactgcga cactagaaaa ttctgcctca aaccccagga tgagaagcca
      181 tcctgtgcta cctgtcgtgg attacggagg tggtgccagc gggctgccgt gtgctgcccg
      241 gggacgctcc gcgtgaatga tgtttgcact gcaatggaag atgcaacccc aatactggag
      301 aggcagatcg atgaccaaga cgacacagat acacaaggaa caaatgagca ctcaattcag
      361 gaaaacaaac ccaagaggaa gccaaatatt aaaaaatcac aaggcagtaa gggacaagag
      421 ggagaaagct gtcttagaac tttcgactgt ggacctggac tttgctgtgc tcgtcatttt
      481 tggactaaaa tttgtaaacc ggccccattg gagggacagg tctgctctag gagagcgcac
      541 aaggatgccg cgcaagctcc agaaatcttc cagcgctggg gctgtggtcc tggactatca
      601 tgtcgaagtc aggccactgg aaatcaacga aactcccggg taagagtgtg gccagaagat
      661 ctaaacagct gcacgtcttc cagcagaagt ctcagacaag aacttaaaaa tcttcccata
      721 caaataactc ttaaaatcaa atcttgtagt aagtga
//
LOCUS       XM_032618300            4652 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit beta (IKBKB), transcript variant X1, mRNA.
ACCESSION   XM_032618300
VERSION     XM_032618300.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4652
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4652
                     /gene="IKBKB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 6 long SRA reads, 11
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746707"
     CDS             118..2433
                     /gene="IKBKB"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit beta isoform X1"
                     /protein_id="XP_032474191.1"
                     /db_xref="GeneID:116746707"
                     /translation="MSWSPSLPTQTCGAWEMKERLGTGGFGNVIRWHNQETGEQIAIK
                     QCRQELSPRNRERWCLEIQIMRRLNHPNVVAARDVPEGMQSLAPNDLPLLAMEYCQGG
                     DLRKYLNQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRL
                     IHKIIDLGYAKELDQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITG
                     FRPFLPNWQPVQWHSKVRQKSEMDIVVSEDLNGAVKFSSSLPHPSNLNSVLAQRLEKW
                     LQLMLMWHPRQRGTDPVYGPNGCFKALDDILNLKLVHVLNMVTGTIHTYPVAEDESLP
                     SLQARIQQDTGIPEEDQELLQEAGLALTPDKPAAQCASDGKLNEGRTLDMDLVFLFDN
                     NRVAYETQISPRPQPESVSCILQEPKRSLPFFQLRKVWGQVWHSIQALKEDCGRLQQG
                     QRAAMMNLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQKEFGITSD
                     KLLLAWREMEQAVELCGRENEVKQLVERMMALQTDIVDLQRSPLGWKQGGTLDDLEEQ
                     ARELYRRLREKPRDQRTDGDSQEMVRLLLQAIQGFEKKVRVIYTQLSKTVVCKQKALE
                     LLPKVEEVVSLMSEDEKTVVRLQEKRQKELWNLLKIACSKVRGPVSGSPDSMNTSRLS
                     HPSQLLSQPCPAPDSLPEAVKKSEDLVAEAHTLCTQLENVLQDTMKDQDQSLRVMARG
                     KPHRPTPFLSTANEKKQMERRCRASSIAVYT"
     misc_feature    175..1044
                     /gene="IKBKB"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Inhibitor of Nuclear Factor-KappaB Kinase (IKK) beta;
                     Region: STKc_IKK_beta; cd14038"
                     /db_xref="CDD:270940"
     misc_feature    order(178..192,202..204,241..243,247..249,337..339,
                     403..414,424..426,430..432,550..552,556..558,562..567,
                     571..573,613..615,622..624,667..678)
                     /gene="IKBKB"
                     /note="active site"
                     /db_xref="CDD:270940"
     misc_feature    order(178..192,202..204,241..243,247..249,337..339,
                     403..414,424..426,550..552,556..558,562..567,571..573,
                     613..615)
                     /gene="IKBKB"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(190..192,424..426,430..432,550..552,556..558,
                     562..564,622..624,667..678)
                     /gene="IKBKB"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(442..444,448..450,457..462,469..471,772..774,
                     787..789,871..876,880..882,898..909)
                     /gene="IKBKB"
                     /note="SDD interface [polypeptide binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(478..480,484..489,589..594)
                     /gene="IKBKB"
                     /note="ULD interface [polypeptide binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    610..678
                     /gene="IKBKB"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270940"
     misc_feature    order(802..804,808..813,823..825)
                     /gene="IKBKB"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:270940"
     misc_feature    1045..1287
                     /gene="IKBKB"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinases, IKK-alpha and IKK-beta,
                     and similar proteins; Region: Ubl_IKKA_like; cd17046"
                     /db_xref="CDD:340566"
     misc_feature    1282..2106
                     /gene="IKBKB"
                     /note="IQBAL scaffold dimerization domain; Region:
                     IKBKB_SDD; pfam18397"
                     /db_xref="CDD:465745"
ORIGIN      
        1 gtcatagtag gaagtgtttg aggaagtggc gctctgctgg cgggtttgag attcccgcac
       61 tttaatgtcg tctgggaggc gcccgcgccc cgccgccaga gttagcagga catcagtatg
      121 agctggtcac cttccctgcc aacccagaca tgcggggcct gggaaatgaa agaacggctt
      181 gggacagggg gatttgggaa cgtcatccga tggcacaatc aggaaacggg cgagcagatc
      241 gctatcaagc agtgccggca ggagcttagt ccccggaacc gcgagcgctg gtgcctggag
      301 atccagatca tgaggaggct gaaccacccc aacgtggtgg ccgccaggga cgtccccgag
      361 ggcatgcaga gcctggctcc caacgacctg cccctgctgg ccatggagta ctgccaggga
      421 ggggacctgc ggaagtacct gaaccagttt gagaactgct gtggcctgcg ggaaggagcc
      481 atcctcacct tgctgagcga catcgcctct gcacttagat accttcacga aaacaggatc
      541 atccatcgcg atctaaagcc agaaaacatc gtcctgcagc aaggggagca gagattaata
      601 cacaaaatta ttgacctagg atatgccaag gagctggacc agggcagtct gtgcacttcc
      661 tttgtgggga ccctgcagta cctggcccct gagctgctag agcagcagaa gtacacggtg
      721 actgtggact actggagctt cggcaccttg gccttcgagt gtatcacggg cttccggccc
      781 ttcctgccca actggcagcc cgtgcagtgg cactccaaag tccggcagaa gagtgagatg
      841 gacattgtgg ttagtgagga cctgaacgga gccgtgaagt tctccagctc attaccccac
      901 ccgagcaacc tcaacagcgt cctggcccag cggctggaga agtggctgca gctgatgctg
      961 atgtggcacc cccgacagag gggcaccgac cccgtctacg ggcccaatgg ctgcttcaag
     1021 gccctggacg acatcttaaa cttgaagctg gttcacgtct tgaacatggt cacgggcacc
     1081 attcacacct accccgtggc agaggacgag agtctgccta gcttgcaggc ccggatccag
     1141 caggacacag gcatccctga ggaggaccag gagctgctgc aggaagcggg tctggccttg
     1201 acccccgaca agcccgccgc tcagtgcgcc tccgacggca agctgaacga gggccgcacc
     1261 ctggacatgg atctcgtttt cctctttgac aacaacaggg tcgcctatga gacccagatc
     1321 tccccacggc cccagcctga aagcgtcagc tgtatcctgc aagagcccaa gaggagcctc
     1381 ccgttcttcc agctgaggaa ggtgtggggt caggtctggc acagcatcca ggccctgaag
     1441 gaggactgcg gccgcctgca gcagggccag cgcgccgcca tgatgaatct gctccgtaac
     1501 aacagctgcc tgtccaagat gaagaattcc atggcctcta tgtctcagca gctcaaggcc
     1561 aagctggatt tctttaaaac cagcatccag attgacctgg agaagtacag tgagcagaaa
     1621 gagtttggga tcacgtcaga caagctgctg ctggcctgga gggagatgga gcaggccgtg
     1681 gagctctgtg gacgggagaa cgaggtgaag cagctggtgg agcggatgat ggcgctacag
     1741 acggacatcg tggacctgca gcgcagcccc ctgggctgga agcagggcgg gacgctggac
     1801 gacctagaag agcaggcgcg ggagctttac cggaggctga gggagaagcc ccgagaccag
     1861 cgaactgatg gcgacagtca ggaaatggtg cggctgctcc tgcaggcaat ccaaggtttt
     1921 gagaagaaag tgcgagtgat ctatacgcag ctcagtaaga ctgtggtctg caagcagaag
     1981 gctctggagc tgctgcccaa ggtggaggag gtggtgagct taatgagcga ggacgagaag
     2041 actgtggttc ggctgcagga gaagcggcag aaggagctct ggaacctcct gaagattgct
     2101 tgtagcaagg tccgcggtcc cgtcagcgga agcccagaca gcatgaacac gtcccgcctg
     2161 agtcacccca gccagctgct gtcgcagcct tgcccagccc ctgacagctt acccgaggcc
     2221 gtcaagaaga gcgaagacct cgtggctgaa gcacacaccc tgtgcaccca gctggaaaac
     2281 gtcctacagg acaccatgaa ggaccaggac cagagcttaa gggtaatggc ccgtgggaag
     2341 ccccaccgcc ccacgccctt tctttctaca gcaaacgaga aaaagcagat ggaaaggcga
     2401 tgccgtgctt cctcgatcgc agtgtacact taggattttc tagtacatac ttcttatgca
     2461 ccgtgataac tgctgatgcc tgttgaacgt gtgcaggtgc tttgtgtgca ttatctcatt
     2521 tcatccttgc tacactcgct gcttacgaag aaggtagcat cattgtgaga aggcctctcc
     2581 cctgctgcac cttctgtaca attgccgggc atctgtgtgt ggggtgcagt gctgggctcc
     2641 gggaacaaag caagagcccg tcaccgcccc gcctctcagg gactcggggc ttagcagtcc
     2701 tagttatagg gaagctgacc taaagaaaaa cgagtccaga tgcaggtacg ttgagacaaa
     2761 gctgaaattg cggagagggt gctaaatcat ccgcttggct ctctggcctt tcctgccgat
     2821 acagtcacat gctggcgtct ccgcaacttc tgatttgggg gaagaatcgg aggggatact
     2881 gctcactgta accacttctt atttattcaa gtgtccttct ctggtttgct gctgtctgtg
     2941 tctcttctca ctgttcttcc tcctccgagc cgtgtatact tggatccttt cactgcccgt
     3001 ttgcacttct gccagacgaa aaggaagtgt gaccaggcca tttcacctgg tgaggttgga
     3061 ggtcgagagc tgagattagc ccagggtacc agctgcccgc agtgagcgtg agtcagtgct
     3121 gtgagctgca gtaataatac ttaaatcacc ttcccggaat ctcagggctc caagcccatc
     3181 tgaagaaaag ctccggcatg gttttgcaga cgtagctcta cctcaggggt accctgcaga
     3241 aacaagactg tcttaacgag aggaattcag tttccctcta aactgtgctg gttgcctgcc
     3301 gaagaaggca gttgtctagg tggccacggt gtctttaacg tgcccgttga ctttcagtct
     3361 ctagactgga gctggttgca gtcgggggag gaggagaagc acagcctgga gcgggcctcc
     3421 tgacggtggg cggccctgac cctgccgggc tgcctggccc gaggcccccg gggccccgcc
     3481 gcgtcgcgtc tggtgtcctc ggcacccaga tggagatctc gcttccccag cagccatgac
     3541 catcaccgtg gactgagggt gcagccctcc ttggcagtgc cagcagctta tctgcacgct
     3601 ggacgtcctc cgccacggag gcccagcaga cgaggatgcc gagcacggcg tctggggagg
     3661 tggagccacg gcagccactg cctctgcgcg gagagaagtg ctccgagtac agtggctcca
     3721 cagaccactg gccacacgtc aaactgactt ttaggacgaa gtatgaatgg cacttggtgc
     3781 tagctgtcct ctcctgaccc ctcctgatct ccagaggcct catccacctg tcttcacagc
     3841 taaggtttca tctggatccg gcttctcttg aaaccgtgga ttcggcccag cccgatcctc
     3901 cctcctcttc tgacttcacg gctgctaacg ttttccttct gcctacgacc ttgggccagg
     3961 ttgggtgagt gctgctttcc ccgtccaaag tctctccagc catagtgagt cgctggtgcc
     4021 aggaggggag agcgtctccc ttcctgtggg tcccaaagag tccccgggag caagctgcca
     4081 tggagaagaa ggaaagaaga ggaagatgtc tgtcaaccac cagcttgctg acccctgtgc
     4141 ccacaccccc tgcccctagg tgcggcaggg ttgacggggc agttcccatc cctcgtgtca
     4201 tccagcggta ttattaactg gatttatatt ttaaaaacag attctctatt ttgtaacatg
     4261 attcaagtcc cacagtctat ttttataata cctctggttg ggacttctga actcaaagtc
     4321 cagctttaat ggaaagtttt atgaaattga gtggtgcctg atcaaacagt gccagagcac
     4381 cagcaaggcc tcttggacgt ttcacaaaag ctgctccttc ctgtaacagc aggctcagat
     4441 gataacaaac aggcaagtct ggttggagaa gaaagtggga cgagaagagt ttcacagagt
     4501 gccttccatg gaggcagtac agtgggttcc gtgtcaggga agttggggaa acgcttcatg
     4561 ctttaactgc ctcttggaga ttcaccttgt gcactggttt attaaagaat ctgaaagatc
     4621 tattataata aactggctta aatctaccta aa
//
LOCUS       XM_032618301            3617 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit beta (IKBKB), transcript variant X2, mRNA.
ACCESSION   XM_032618301
VERSION     XM_032618301.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3617
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3617
                     /gene="IKBKB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 11 long SRA reads, 28
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746707"
     CDS             118..2388
                     /gene="IKBKB"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit beta isoform X2"
                     /protein_id="XP_032474192.1"
                     /db_xref="GeneID:116746707"
                     /translation="MSWSPSLPTQTCGAWEMKERLGTGGFGNVIRWHNQETGEQIAIK
                     QCRQELSPRNRERWCLEIQIMRRLNHPNVVAARDVPEGMQSLAPNDLPLLAMEYCQGG
                     DLRKYLNQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRL
                     IHKIIDLGYAKELDQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITG
                     FRPFLPNWQPVQWHSKVRQKSEMDIVVSEDLNGAVKFSSSLPHPSNLNSVLAQRLEKW
                     LQLMLMWHPRQRGTDPVYGPNGCFKALDDILNLKLVHVLNMVTGTIHTYPVAEDESLP
                     SLQARIQQDTGIPEEDQELLQEAGLALTPDKPAAQCASDGKLNEGRTLDMDLVFLFDN
                     NRVAYETQISPRPQPESVSCILQEPKRSLPFFQLRKVWGQVWHSIQALKEDCGRLQQG
                     QRAAMMNLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQKEFGITSD
                     KLLLAWREMEQAVELCGRENEVKQLVERMMALQTDIVDLQRSPLGWKQGGTLDDLEEQ
                     ARELYRRLREKPRDQRTDGDSQEMVRLLLQAIQGFEKKVRVIYTQLSKTVVCKQKALE
                     LLPKVEEVVSLMSEDEKTVVRLQEKRQKELWNLLKIACSKVRGPVSGSPDSMNTSRLS
                     HPSQLLSQPCPAPDSLPEAVKKSEDLVAEAHTLCTQLENVLQDTMKDQDQSLRSLDWS
                     WLQSGEEEKHSLERAS"
     misc_feature    175..1044
                     /gene="IKBKB"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Inhibitor of Nuclear Factor-KappaB Kinase (IKK) beta;
                     Region: STKc_IKK_beta; cd14038"
                     /db_xref="CDD:270940"
     misc_feature    order(178..192,202..204,241..243,247..249,337..339,
                     403..414,424..426,430..432,550..552,556..558,562..567,
                     571..573,613..615,622..624,667..678)
                     /gene="IKBKB"
                     /note="active site"
                     /db_xref="CDD:270940"
     misc_feature    order(178..192,202..204,241..243,247..249,337..339,
                     403..414,424..426,550..552,556..558,562..567,571..573,
                     613..615)
                     /gene="IKBKB"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(190..192,424..426,430..432,550..552,556..558,
                     562..564,622..624,667..678)
                     /gene="IKBKB"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(442..444,448..450,457..462,469..471,772..774,
                     787..789,871..876,880..882,898..909)
                     /gene="IKBKB"
                     /note="SDD interface [polypeptide binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(478..480,484..489,589..594)
                     /gene="IKBKB"
                     /note="ULD interface [polypeptide binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    610..678
                     /gene="IKBKB"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270940"
     misc_feature    order(802..804,808..813,823..825)
                     /gene="IKBKB"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:270940"
     misc_feature    1045..1287
                     /gene="IKBKB"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinases, IKK-alpha and IKK-beta,
                     and similar proteins; Region: Ubl_IKKA_like; cd17046"
                     /db_xref="CDD:340566"
     misc_feature    1282..2106
                     /gene="IKBKB"
                     /note="IQBAL scaffold dimerization domain; Region:
                     IKBKB_SDD; pfam18397"
                     /db_xref="CDD:465745"
     misc_feature    2233..2343
                     /gene="IKBKB"
                     /note="I-kappa-kinase-beta NEMO binding domain; Region:
                     IKKbetaNEMObind; pfam12179"
                     /db_xref="CDD:463485"
ORIGIN      
        1 gtcatagtag gaagtgtttg aggaagtggc gctctgctgg cgggtttgag attcccgcac
       61 tttaatgtcg tctgggaggc gcccgcgccc cgccgccaga gttagcagga catcagtatg
      121 agctggtcac cttccctgcc aacccagaca tgcggggcct gggaaatgaa agaacggctt
      181 gggacagggg gatttgggaa cgtcatccga tggcacaatc aggaaacggg cgagcagatc
      241 gctatcaagc agtgccggca ggagcttagt ccccggaacc gcgagcgctg gtgcctggag
      301 atccagatca tgaggaggct gaaccacccc aacgtggtgg ccgccaggga cgtccccgag
      361 ggcatgcaga gcctggctcc caacgacctg cccctgctgg ccatggagta ctgccaggga
      421 ggggacctgc ggaagtacct gaaccagttt gagaactgct gtggcctgcg ggaaggagcc
      481 atcctcacct tgctgagcga catcgcctct gcacttagat accttcacga aaacaggatc
      541 atccatcgcg atctaaagcc agaaaacatc gtcctgcagc aaggggagca gagattaata
      601 cacaaaatta ttgacctagg atatgccaag gagctggacc agggcagtct gtgcacttcc
      661 tttgtgggga ccctgcagta cctggcccct gagctgctag agcagcagaa gtacacggtg
      721 actgtggact actggagctt cggcaccttg gccttcgagt gtatcacggg cttccggccc
      781 ttcctgccca actggcagcc cgtgcagtgg cactccaaag tccggcagaa gagtgagatg
      841 gacattgtgg ttagtgagga cctgaacgga gccgtgaagt tctccagctc attaccccac
      901 ccgagcaacc tcaacagcgt cctggcccag cggctggaga agtggctgca gctgatgctg
      961 atgtggcacc cccgacagag gggcaccgac cccgtctacg ggcccaatgg ctgcttcaag
     1021 gccctggacg acatcttaaa cttgaagctg gttcacgtct tgaacatggt cacgggcacc
     1081 attcacacct accccgtggc agaggacgag agtctgccta gcttgcaggc ccggatccag
     1141 caggacacag gcatccctga ggaggaccag gagctgctgc aggaagcggg tctggccttg
     1201 acccccgaca agcccgccgc tcagtgcgcc tccgacggca agctgaacga gggccgcacc
     1261 ctggacatgg atctcgtttt cctctttgac aacaacaggg tcgcctatga gacccagatc
     1321 tccccacggc cccagcctga aagcgtcagc tgtatcctgc aagagcccaa gaggagcctc
     1381 ccgttcttcc agctgaggaa ggtgtggggt caggtctggc acagcatcca ggccctgaag
     1441 gaggactgcg gccgcctgca gcagggccag cgcgccgcca tgatgaatct gctccgtaac
     1501 aacagctgcc tgtccaagat gaagaattcc atggcctcta tgtctcagca gctcaaggcc
     1561 aagctggatt tctttaaaac cagcatccag attgacctgg agaagtacag tgagcagaaa
     1621 gagtttggga tcacgtcaga caagctgctg ctggcctgga gggagatgga gcaggccgtg
     1681 gagctctgtg gacgggagaa cgaggtgaag cagctggtgg agcggatgat ggcgctacag
     1741 acggacatcg tggacctgca gcgcagcccc ctgggctgga agcagggcgg gacgctggac
     1801 gacctagaag agcaggcgcg ggagctttac cggaggctga gggagaagcc ccgagaccag
     1861 cgaactgatg gcgacagtca ggaaatggtg cggctgctcc tgcaggcaat ccaaggtttt
     1921 gagaagaaag tgcgagtgat ctatacgcag ctcagtaaga ctgtggtctg caagcagaag
     1981 gctctggagc tgctgcccaa ggtggaggag gtggtgagct taatgagcga ggacgagaag
     2041 actgtggttc ggctgcagga gaagcggcag aaggagctct ggaacctcct gaagattgct
     2101 tgtagcaagg tccgcggtcc cgtcagcgga agcccagaca gcatgaacac gtcccgcctg
     2161 agtcacccca gccagctgct gtcgcagcct tgcccagccc ctgacagctt acccgaggcc
     2221 gtcaagaaga gcgaagacct cgtggctgaa gcacacaccc tgtgcaccca gctggaaaac
     2281 gtcctacagg acaccatgaa ggaccaggac cagagcttaa ggtctctaga ctggagctgg
     2341 ttgcagtcgg gggaggagga gaagcacagc ctggagcggg cctcctgacg gtgggcggcc
     2401 ctgaccctgc cgggctgcct ggcccgaggc ccccggggcc ccgccgcgtc gcgtctggtg
     2461 tcctcggcac ccagatggag atctcgcttc cccagcagcc atgaccatca ccgtggactg
     2521 agggtgcagc cctccttggc agtgccagca gcttatctgc acgctggacg tcctccgcca
     2581 cggaggccca gcagacgagg atgccgagca cggcgtctgg ggaggtggag ccacggcagc
     2641 cactgcctct gcgcggagag aagtgctccg agtacagtgg ctccacagac cactggccac
     2701 acgtcaaact gacttttagg acgaagtatg aatggcactt ggtgctagct gtcctctcct
     2761 gacccctcct gatctccaga ggcctcatcc acctgtcttc acagctaagg tttcatctgg
     2821 atccggcttc tcttgaaacc gtggattcgg cccagcccga tcctccctcc tcttctgact
     2881 tcacggctgc taacgttttc cttctgccta cgaccttggg ccaggttggg tgagtgctgc
     2941 tttccccgtc caaagtctct ccagccatag tgagtcgctg gtgccaggag gggagagcgt
     3001 ctcccttcct gtgggtccca aagagtcccc gggagcaagc tgccatggag aagaaggaaa
     3061 gaagaggaag atgtctgtca accaccagct tgctgacccc tgtgcccaca ccccctgccc
     3121 ctaggtgcgg cagggttgac ggggcagttc ccatccctcg tgtcatccag cggtattatt
     3181 aactggattt atattttaaa aacagattct ctattttgta acatgattca agtcccacag
     3241 tctattttta taatacctct ggttgggact tctgaactca aagtccagct ttaatggaaa
     3301 gttttatgaa attgagtggt gcctgatcaa acagtgccag agcaccagca aggcctcttg
     3361 gacgtttcac aaaagctgct ccttcctgta acagcaggct cagatgataa caaacaggca
     3421 agtctggttg gagaagaaag tgggacgaga agagtttcac agagtgcctt ccatggaggc
     3481 agtacagtgg gttccgtgtc agggaagttg gggaaacgct tcatgcttta actgcctctt
     3541 ggagattcac cttgtgcact ggtttattaa agaatctgaa agatctatta taataaactg
     3601 gcttaaatct acctaaa
//
LOCUS       XM_032618302            3747 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit beta (IKBKB), transcript variant X3, mRNA.
ACCESSION   XM_032618302
VERSION     XM_032618302.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3747
                     /gene="IKBKB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 11 long SRA reads, 28
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746707"
     CDS             248..2518
                     /gene="IKBKB"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit beta isoform X2"
                     /protein_id="XP_032474193.1"
                     /db_xref="GeneID:116746707"
                     /translation="MSWSPSLPTQTCGAWEMKERLGTGGFGNVIRWHNQETGEQIAIK
                     QCRQELSPRNRERWCLEIQIMRRLNHPNVVAARDVPEGMQSLAPNDLPLLAMEYCQGG
                     DLRKYLNQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRL
                     IHKIIDLGYAKELDQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITG
                     FRPFLPNWQPVQWHSKVRQKSEMDIVVSEDLNGAVKFSSSLPHPSNLNSVLAQRLEKW
                     LQLMLMWHPRQRGTDPVYGPNGCFKALDDILNLKLVHVLNMVTGTIHTYPVAEDESLP
                     SLQARIQQDTGIPEEDQELLQEAGLALTPDKPAAQCASDGKLNEGRTLDMDLVFLFDN
                     NRVAYETQISPRPQPESVSCILQEPKRSLPFFQLRKVWGQVWHSIQALKEDCGRLQQG
                     QRAAMMNLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQKEFGITSD
                     KLLLAWREMEQAVELCGRENEVKQLVERMMALQTDIVDLQRSPLGWKQGGTLDDLEEQ
                     ARELYRRLREKPRDQRTDGDSQEMVRLLLQAIQGFEKKVRVIYTQLSKTVVCKQKALE
                     LLPKVEEVVSLMSEDEKTVVRLQEKRQKELWNLLKIACSKVRGPVSGSPDSMNTSRLS
                     HPSQLLSQPCPAPDSLPEAVKKSEDLVAEAHTLCTQLENVLQDTMKDQDQSLRSLDWS
                     WLQSGEEEKHSLERAS"
     misc_feature    305..1174
                     /gene="IKBKB"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Inhibitor of Nuclear Factor-KappaB Kinase (IKK) beta;
                     Region: STKc_IKK_beta; cd14038"
                     /db_xref="CDD:270940"
     misc_feature    order(308..322,332..334,371..373,377..379,467..469,
                     533..544,554..556,560..562,680..682,686..688,692..697,
                     701..703,743..745,752..754,797..808)
                     /gene="IKBKB"
                     /note="active site"
                     /db_xref="CDD:270940"
     misc_feature    order(308..322,332..334,371..373,377..379,467..469,
                     533..544,554..556,680..682,686..688,692..697,701..703,
                     743..745)
                     /gene="IKBKB"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(320..322,554..556,560..562,680..682,686..688,
                     692..694,752..754,797..808)
                     /gene="IKBKB"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(572..574,578..580,587..592,599..601,902..904,
                     917..919,1001..1006,1010..1012,1028..1039)
                     /gene="IKBKB"
                     /note="SDD interface [polypeptide binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    order(608..610,614..619,719..724)
                     /gene="IKBKB"
                     /note="ULD interface [polypeptide binding]; other site"
                     /db_xref="CDD:270940"
     misc_feature    740..808
                     /gene="IKBKB"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270940"
     misc_feature    order(932..934,938..943,953..955)
                     /gene="IKBKB"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:270940"
     misc_feature    1175..1417
                     /gene="IKBKB"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinases, IKK-alpha and IKK-beta,
                     and similar proteins; Region: Ubl_IKKA_like; cd17046"
                     /db_xref="CDD:340566"
     misc_feature    1412..2236
                     /gene="IKBKB"
                     /note="IQBAL scaffold dimerization domain; Region:
                     IKBKB_SDD; pfam18397"
                     /db_xref="CDD:465745"
     misc_feature    2363..2473
                     /gene="IKBKB"
                     /note="I-kappa-kinase-beta NEMO binding domain; Region:
                     IKKbetaNEMObind; pfam12179"
                     /db_xref="CDD:463485"
ORIGIN      
        1 ggagttggga ggggaggcgc cccggccagc ggtctgggcg cccgggcggg gtcccggctg
       61 gggaacccct tgcaggtcct gggcagtggg gcgccctgtc ctttgaggga ctctcctccc
      121 tgctgcttcc gtacagcttg gggagggggc cgtcggtgga ggggctgcga aaggccggag
      181 ttagccacca aaaccaaaac caaaccaaac aacctggttt atgtacgaga gttagcagga
      241 catcagtatg agctggtcac cttccctgcc aacccagaca tgcggggcct gggaaatgaa
      301 agaacggctt gggacagggg gatttgggaa cgtcatccga tggcacaatc aggaaacggg
      361 cgagcagatc gctatcaagc agtgccggca ggagcttagt ccccggaacc gcgagcgctg
      421 gtgcctggag atccagatca tgaggaggct gaaccacccc aacgtggtgg ccgccaggga
      481 cgtccccgag ggcatgcaga gcctggctcc caacgacctg cccctgctgg ccatggagta
      541 ctgccaggga ggggacctgc ggaagtacct gaaccagttt gagaactgct gtggcctgcg
      601 ggaaggagcc atcctcacct tgctgagcga catcgcctct gcacttagat accttcacga
      661 aaacaggatc atccatcgcg atctaaagcc agaaaacatc gtcctgcagc aaggggagca
      721 gagattaata cacaaaatta ttgacctagg atatgccaag gagctggacc agggcagtct
      781 gtgcacttcc tttgtgggga ccctgcagta cctggcccct gagctgctag agcagcagaa
      841 gtacacggtg actgtggact actggagctt cggcaccttg gccttcgagt gtatcacggg
      901 cttccggccc ttcctgccca actggcagcc cgtgcagtgg cactccaaag tccggcagaa
      961 gagtgagatg gacattgtgg ttagtgagga cctgaacgga gccgtgaagt tctccagctc
     1021 attaccccac ccgagcaacc tcaacagcgt cctggcccag cggctggaga agtggctgca
     1081 gctgatgctg atgtggcacc cccgacagag gggcaccgac cccgtctacg ggcccaatgg
     1141 ctgcttcaag gccctggacg acatcttaaa cttgaagctg gttcacgtct tgaacatggt
     1201 cacgggcacc attcacacct accccgtggc agaggacgag agtctgccta gcttgcaggc
     1261 ccggatccag caggacacag gcatccctga ggaggaccag gagctgctgc aggaagcggg
     1321 tctggccttg acccccgaca agcccgccgc tcagtgcgcc tccgacggca agctgaacga
     1381 gggccgcacc ctggacatgg atctcgtttt cctctttgac aacaacaggg tcgcctatga
     1441 gacccagatc tccccacggc cccagcctga aagcgtcagc tgtatcctgc aagagcccaa
     1501 gaggagcctc ccgttcttcc agctgaggaa ggtgtggggt caggtctggc acagcatcca
     1561 ggccctgaag gaggactgcg gccgcctgca gcagggccag cgcgccgcca tgatgaatct
     1621 gctccgtaac aacagctgcc tgtccaagat gaagaattcc atggcctcta tgtctcagca
     1681 gctcaaggcc aagctggatt tctttaaaac cagcatccag attgacctgg agaagtacag
     1741 tgagcagaaa gagtttggga tcacgtcaga caagctgctg ctggcctgga gggagatgga
     1801 gcaggccgtg gagctctgtg gacgggagaa cgaggtgaag cagctggtgg agcggatgat
     1861 ggcgctacag acggacatcg tggacctgca gcgcagcccc ctgggctgga agcagggcgg
     1921 gacgctggac gacctagaag agcaggcgcg ggagctttac cggaggctga gggagaagcc
     1981 ccgagaccag cgaactgatg gcgacagtca ggaaatggtg cggctgctcc tgcaggcaat
     2041 ccaaggtttt gagaagaaag tgcgagtgat ctatacgcag ctcagtaaga ctgtggtctg
     2101 caagcagaag gctctggagc tgctgcccaa ggtggaggag gtggtgagct taatgagcga
     2161 ggacgagaag actgtggttc ggctgcagga gaagcggcag aaggagctct ggaacctcct
     2221 gaagattgct tgtagcaagg tccgcggtcc cgtcagcgga agcccagaca gcatgaacac
     2281 gtcccgcctg agtcacccca gccagctgct gtcgcagcct tgcccagccc ctgacagctt
     2341 acccgaggcc gtcaagaaga gcgaagacct cgtggctgaa gcacacaccc tgtgcaccca
     2401 gctggaaaac gtcctacagg acaccatgaa ggaccaggac cagagcttaa ggtctctaga
     2461 ctggagctgg ttgcagtcgg gggaggagga gaagcacagc ctggagcggg cctcctgacg
     2521 gtgggcggcc ctgaccctgc cgggctgcct ggcccgaggc ccccggggcc ccgccgcgtc
     2581 gcgtctggtg tcctcggcac ccagatggag atctcgcttc cccagcagcc atgaccatca
     2641 ccgtggactg agggtgcagc cctccttggc agtgccagca gcttatctgc acgctggacg
     2701 tcctccgcca cggaggccca gcagacgagg atgccgagca cggcgtctgg ggaggtggag
     2761 ccacggcagc cactgcctct gcgcggagag aagtgctccg agtacagtgg ctccacagac
     2821 cactggccac acgtcaaact gacttttagg acgaagtatg aatggcactt ggtgctagct
     2881 gtcctctcct gacccctcct gatctccaga ggcctcatcc acctgtcttc acagctaagg
     2941 tttcatctgg atccggcttc tcttgaaacc gtggattcgg cccagcccga tcctccctcc
     3001 tcttctgact tcacggctgc taacgttttc cttctgccta cgaccttggg ccaggttggg
     3061 tgagtgctgc tttccccgtc caaagtctct ccagccatag tgagtcgctg gtgccaggag
     3121 gggagagcgt ctcccttcct gtgggtccca aagagtcccc gggagcaagc tgccatggag
     3181 aagaaggaaa gaagaggaag atgtctgtca accaccagct tgctgacccc tgtgcccaca
     3241 ccccctgccc ctaggtgcgg cagggttgac ggggcagttc ccatccctcg tgtcatccag
     3301 cggtattatt aactggattt atattttaaa aacagattct ctattttgta acatgattca
     3361 agtcccacag tctattttta taatacctct ggttgggact tctgaactca aagtccagct
     3421 ttaatggaaa gttttatgaa attgagtggt gcctgatcaa acagtgccag agcaccagca
     3481 aggcctcttg gacgtttcac aaaagctgct ccttcctgta acagcaggct cagatgataa
     3541 caaacaggca agtctggttg gagaagaaag tgggacgaga agagtttcac agagtgcctt
     3601 ccatggaggc agtacagtgg gttccgtgtc agggaagttg gggaaacgct tcatgcttta
     3661 actgcctctt ggagattcac cttgtgcact ggtttattaa agaatctgaa agatctatta
     3721 taataaactg gcttaaatct acctaaa
//
LOCUS       XM_032618303            3883 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit beta (IKBKB), transcript variant X4, mRNA.
ACCESSION   XM_032618303
VERSION     XM_032618303.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3883
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3883
                     /gene="IKBKB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746707"
     CDS             576..2654
                     /gene="IKBKB"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit beta isoform X3"
                     /protein_id="XP_032474194.1"
                     /db_xref="GeneID:116746707"
                     /translation="MRRLNHPNVVAARDVPEGMQSLAPNDLPLLAMEYCQGGDLRKYL
                     NQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRLIHKIID
                     LGYAKELDQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLP
                     NWQPVQWHSKVRQKSEMDIVVSEDLNGAVKFSSSLPHPSNLNSVLAQRLEKWLQLMLM
                     WHPRQRGTDPVYGPNGCFKALDDILNLKLVHVLNMVTGTIHTYPVAEDESLPSLQARI
                     QQDTGIPEEDQELLQEAGLALTPDKPAAQCASDGKLNEGRTLDMDLVFLFDNNRVAYE
                     TQISPRPQPESVSCILQEPKRSLPFFQLRKVWGQVWHSIQALKEDCGRLQQGQRAAMM
                     NLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQKEFGITSDKLLLAW
                     REMEQAVELCGRENEVKQLVERMMALQTDIVDLQRSPLGWKQGGTLDDLEEQARELYR
                     RLREKPRDQRTDGDSQEMVRLLLQAIQGFEKKVRVIYTQLSKTVVCKQKALELLPKVE
                     EVVSLMSEDEKTVVRLQEKRQKELWNLLKIACSKVRGPVSGSPDSMNTSRLSHPSQLL
                     SQPCPAPDSLPEAVKKSEDLVAEAHTLCTQLENVLQDTMKDQDQSLRSLDWSWLQSGE
                     EEKHSLERAS"
     misc_feature    576..1310
                     /gene="IKBKB"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    1311..1553
                     /gene="IKBKB"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinases, IKK-alpha and IKK-beta,
                     and similar proteins; Region: Ubl_IKKA_like; cd17046"
                     /db_xref="CDD:340566"
     misc_feature    1548..2372
                     /gene="IKBKB"
                     /note="IQBAL scaffold dimerization domain; Region:
                     IKBKB_SDD; pfam18397"
                     /db_xref="CDD:465745"
     misc_feature    2499..2609
                     /gene="IKBKB"
                     /note="I-kappa-kinase-beta NEMO binding domain; Region:
                     IKKbetaNEMObind; pfam12179"
                     /db_xref="CDD:463485"
ORIGIN      
        1 agttagcagg acatcagtat gagctggtca ccttccctgc caacccagac atgcggggcc
       61 tgggaaatga aagaacggct tgggacaggg ggatttggga acgtcatccg atggcacaat
      121 caggatctct ctgggcccag cttcgcacct ccttcctgaa acacttatct tggagggagg
      181 acctgagaag gaacaaggaa ggtatttcta atccccctgt tggatcacag aggcctgttg
      241 ggtggttgcc gtgataacaa gagtcagcgt tctgacctca gggtgtggag ggacctctcg
      301 gcttcccatg catgtcgcct tgtcgttaga agagcaccat ctgatggtct cagaagtctg
      361 aggatgcatg cccccccgcc accctcactt cagagtatac ccacgtttat acacgaggtt
      421 cgtgttttcc tgtgcaaaag gcagagtcac agacactcag aggaccttca taatcaactg
      481 cctttgatga aacgggcgag cagatcgcta tcaagcagtg ccggcaggag cttagtcccc
      541 ggaaccgcga gcgctggtgc ctggagatcc agatcatgag gaggctgaac caccccaacg
      601 tggtggccgc cagggacgtc cccgagggca tgcagagcct ggctcccaac gacctgcccc
      661 tgctggccat ggagtactgc cagggagggg acctgcggaa gtacctgaac cagtttgaga
      721 actgctgtgg cctgcgggaa ggagccatcc tcaccttgct gagcgacatc gcctctgcac
      781 ttagatacct tcacgaaaac aggatcatcc atcgcgatct aaagccagaa aacatcgtcc
      841 tgcagcaagg ggagcagaga ttaatacaca aaattattga cctaggatat gccaaggagc
      901 tggaccaggg cagtctgtgc acttcctttg tggggaccct gcagtacctg gcccctgagc
      961 tgctagagca gcagaagtac acggtgactg tggactactg gagcttcggc accttggcct
     1021 tcgagtgtat cacgggcttc cggcccttcc tgcccaactg gcagcccgtg cagtggcact
     1081 ccaaagtccg gcagaagagt gagatggaca ttgtggttag tgaggacctg aacggagccg
     1141 tgaagttctc cagctcatta ccccacccga gcaacctcaa cagcgtcctg gcccagcggc
     1201 tggagaagtg gctgcagctg atgctgatgt ggcacccccg acagaggggc accgaccccg
     1261 tctacgggcc caatggctgc ttcaaggccc tggacgacat cttaaacttg aagctggttc
     1321 acgtcttgaa catggtcacg ggcaccattc acacctaccc cgtggcagag gacgagagtc
     1381 tgcctagctt gcaggcccgg atccagcagg acacaggcat ccctgaggag gaccaggagc
     1441 tgctgcagga agcgggtctg gccttgaccc ccgacaagcc cgccgctcag tgcgcctccg
     1501 acggcaagct gaacgagggc cgcaccctgg acatggatct cgttttcctc tttgacaaca
     1561 acagggtcgc ctatgagacc cagatctccc cacggcccca gcctgaaagc gtcagctgta
     1621 tcctgcaaga gcccaagagg agcctcccgt tcttccagct gaggaaggtg tggggtcagg
     1681 tctggcacag catccaggcc ctgaaggagg actgcggccg cctgcagcag ggccagcgcg
     1741 ccgccatgat gaatctgctc cgtaacaaca gctgcctgtc caagatgaag aattccatgg
     1801 cctctatgtc tcagcagctc aaggccaagc tggatttctt taaaaccagc atccagattg
     1861 acctggagaa gtacagtgag cagaaagagt ttgggatcac gtcagacaag ctgctgctgg
     1921 cctggaggga gatggagcag gccgtggagc tctgtggacg ggagaacgag gtgaagcagc
     1981 tggtggagcg gatgatggcg ctacagacgg acatcgtgga cctgcagcgc agccccctgg
     2041 gctggaagca gggcgggacg ctggacgacc tagaagagca ggcgcgggag ctttaccgga
     2101 ggctgaggga gaagccccga gaccagcgaa ctgatggcga cagtcaggaa atggtgcggc
     2161 tgctcctgca ggcaatccaa ggttttgaga agaaagtgcg agtgatctat acgcagctca
     2221 gtaagactgt ggtctgcaag cagaaggctc tggagctgct gcccaaggtg gaggaggtgg
     2281 tgagcttaat gagcgaggac gagaagactg tggttcggct gcaggagaag cggcagaagg
     2341 agctctggaa cctcctgaag attgcttgta gcaaggtccg cggtcccgtc agcggaagcc
     2401 cagacagcat gaacacgtcc cgcctgagtc accccagcca gctgctgtcg cagccttgcc
     2461 cagcccctga cagcttaccc gaggccgtca agaagagcga agacctcgtg gctgaagcac
     2521 acaccctgtg cacccagctg gaaaacgtcc tacaggacac catgaaggac caggaccaga
     2581 gcttaaggtc tctagactgg agctggttgc agtcggggga ggaggagaag cacagcctgg
     2641 agcgggcctc ctgacggtgg gcggccctga ccctgccggg ctgcctggcc cgaggccccc
     2701 ggggccccgc cgcgtcgcgt ctggtgtcct cggcacccag atggagatct cgcttcccca
     2761 gcagccatga ccatcaccgt ggactgaggg tgcagccctc cttggcagtg ccagcagctt
     2821 atctgcacgc tggacgtcct ccgccacgga ggcccagcag acgaggatgc cgagcacggc
     2881 gtctggggag gtggagccac ggcagccact gcctctgcgc ggagagaagt gctccgagta
     2941 cagtggctcc acagaccact ggccacacgt caaactgact tttaggacga agtatgaatg
     3001 gcacttggtg ctagctgtcc tctcctgacc cctcctgatc tccagaggcc tcatccacct
     3061 gtcttcacag ctaaggtttc atctggatcc ggcttctctt gaaaccgtgg attcggccca
     3121 gcccgatcct ccctcctctt ctgacttcac ggctgctaac gttttccttc tgcctacgac
     3181 cttgggccag gttgggtgag tgctgctttc cccgtccaaa gtctctccag ccatagtgag
     3241 tcgctggtgc caggagggga gagcgtctcc cttcctgtgg gtcccaaaga gtccccggga
     3301 gcaagctgcc atggagaaga aggaaagaag aggaagatgt ctgtcaacca ccagcttgct
     3361 gacccctgtg cccacacccc ctgcccctag gtgcggcagg gttgacgggg cagttcccat
     3421 ccctcgtgtc atccagcggt attattaact ggatttatat tttaaaaaca gattctctat
     3481 tttgtaacat gattcaagtc ccacagtcta tttttataat acctctggtt gggacttctg
     3541 aactcaaagt ccagctttaa tggaaagttt tatgaaattg agtggtgcct gatcaaacag
     3601 tgccagagca ccagcaaggc ctcttggacg tttcacaaaa gctgctcctt cctgtaacag
     3661 caggctcaga tgataacaaa caggcaagtc tggttggaga agaaagtggg acgagaagag
     3721 tttcacagag tgccttccat ggaggcagta cagtgggttc cgtgtcaggg aagttgggga
     3781 aacgcttcat gctttaactg cctcttggag attcaccttg tgcactggtt tattaaagaa
     3841 tctgaaagat ctattataat aaactggctt aaatctacct aaa
//
LOCUS       XM_032618305            3803 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of nuclear factor kappa B
            kinase subunit beta (IKBKB), transcript variant X5, mRNA.
ACCESSION   XM_032618305
VERSION     XM_032618305.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3803
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3803
                     /gene="IKBKB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746707"
     CDS             496..2574
                     /gene="IKBKB"
                     /codon_start=1
                     /product="inhibitor of nuclear factor kappa-B kinase
                     subunit beta isoform X3"
                     /protein_id="XP_032474196.1"
                     /db_xref="GeneID:116746707"
                     /translation="MRRLNHPNVVAARDVPEGMQSLAPNDLPLLAMEYCQGGDLRKYL
                     NQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRLIHKIID
                     LGYAKELDQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLP
                     NWQPVQWHSKVRQKSEMDIVVSEDLNGAVKFSSSLPHPSNLNSVLAQRLEKWLQLMLM
                     WHPRQRGTDPVYGPNGCFKALDDILNLKLVHVLNMVTGTIHTYPVAEDESLPSLQARI
                     QQDTGIPEEDQELLQEAGLALTPDKPAAQCASDGKLNEGRTLDMDLVFLFDNNRVAYE
                     TQISPRPQPESVSCILQEPKRSLPFFQLRKVWGQVWHSIQALKEDCGRLQQGQRAAMM
                     NLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQKEFGITSDKLLLAW
                     REMEQAVELCGRENEVKQLVERMMALQTDIVDLQRSPLGWKQGGTLDDLEEQARELYR
                     RLREKPRDQRTDGDSQEMVRLLLQAIQGFEKKVRVIYTQLSKTVVCKQKALELLPKVE
                     EVVSLMSEDEKTVVRLQEKRQKELWNLLKIACSKVRGPVSGSPDSMNTSRLSHPSQLL
                     SQPCPAPDSLPEAVKKSEDLVAEAHTLCTQLENVLQDTMKDQDQSLRSLDWSWLQSGE
                     EEKHSLERAS"
     misc_feature    496..1230
                     /gene="IKBKB"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    1231..1473
                     /gene="IKBKB"
                     /note="ubiquitin-like (Ubl) domain found in inhibitor of
                     nuclear factor kappa-B kinases, IKK-alpha and IKK-beta,
                     and similar proteins; Region: Ubl_IKKA_like; cd17046"
                     /db_xref="CDD:340566"
     misc_feature    1468..2292
                     /gene="IKBKB"
                     /note="IQBAL scaffold dimerization domain; Region:
                     IKBKB_SDD; pfam18397"
                     /db_xref="CDD:465745"
     misc_feature    2419..2529
                     /gene="IKBKB"
                     /note="I-kappa-kinase-beta NEMO binding domain; Region:
                     IKKbetaNEMObind; pfam12179"
                     /db_xref="CDD:463485"
ORIGIN      
        1 agttagcagg acatcagtat gagctggtca ccttccctgc caacccagac atgcggggcc
       61 tgggaaatga aagaacggct tgggacaggg ggatttggga acgtcatccg atggcacaat
      121 caggatctct ctgggcccag cttcgcacct ccttcctgaa acacttatct tggagggagg
      181 acctgagaag gaacaaggaa gggtgtggag ggacctctcg gcttcccatg catgtcgcct
      241 tgtcgttaga agagcaccat ctgatggtct cagaagtctg aggatgcatg cccccccgcc
      301 accctcactt cagagtatac ccacgtttat acacgaggtt cgtgttttcc tgtgcaaaag
      361 gcagagtcac agacactcag aggaccttca taatcaactg cctttgatga aacgggcgag
      421 cagatcgcta tcaagcagtg ccggcaggag cttagtcccc ggaaccgcga gcgctggtgc
      481 ctggagatcc agatcatgag gaggctgaac caccccaacg tggtggccgc cagggacgtc
      541 cccgagggca tgcagagcct ggctcccaac gacctgcccc tgctggccat ggagtactgc
      601 cagggagggg acctgcggaa gtacctgaac cagtttgaga actgctgtgg cctgcgggaa
      661 ggagccatcc tcaccttgct gagcgacatc gcctctgcac ttagatacct tcacgaaaac
      721 aggatcatcc atcgcgatct aaagccagaa aacatcgtcc tgcagcaagg ggagcagaga
      781 ttaatacaca aaattattga cctaggatat gccaaggagc tggaccaggg cagtctgtgc
      841 acttcctttg tggggaccct gcagtacctg gcccctgagc tgctagagca gcagaagtac
      901 acggtgactg tggactactg gagcttcggc accttggcct tcgagtgtat cacgggcttc
      961 cggcccttcc tgcccaactg gcagcccgtg cagtggcact ccaaagtccg gcagaagagt
     1021 gagatggaca ttgtggttag tgaggacctg aacggagccg tgaagttctc cagctcatta
     1081 ccccacccga gcaacctcaa cagcgtcctg gcccagcggc tggagaagtg gctgcagctg
     1141 atgctgatgt ggcacccccg acagaggggc accgaccccg tctacgggcc caatggctgc
     1201 ttcaaggccc tggacgacat cttaaacttg aagctggttc acgtcttgaa catggtcacg
     1261 ggcaccattc acacctaccc cgtggcagag gacgagagtc tgcctagctt gcaggcccgg
     1321 atccagcagg acacaggcat ccctgaggag gaccaggagc tgctgcagga agcgggtctg
     1381 gccttgaccc ccgacaagcc cgccgctcag tgcgcctccg acggcaagct gaacgagggc
     1441 cgcaccctgg acatggatct cgttttcctc tttgacaaca acagggtcgc ctatgagacc
     1501 cagatctccc cacggcccca gcctgaaagc gtcagctgta tcctgcaaga gcccaagagg
     1561 agcctcccgt tcttccagct gaggaaggtg tggggtcagg tctggcacag catccaggcc
     1621 ctgaaggagg actgcggccg cctgcagcag ggccagcgcg ccgccatgat gaatctgctc
     1681 cgtaacaaca gctgcctgtc caagatgaag aattccatgg cctctatgtc tcagcagctc
     1741 aaggccaagc tggatttctt taaaaccagc atccagattg acctggagaa gtacagtgag
     1801 cagaaagagt ttgggatcac gtcagacaag ctgctgctgg cctggaggga gatggagcag
     1861 gccgtggagc tctgtggacg ggagaacgag gtgaagcagc tggtggagcg gatgatggcg
     1921 ctacagacgg acatcgtgga cctgcagcgc agccccctgg gctggaagca gggcgggacg
     1981 ctggacgacc tagaagagca ggcgcgggag ctttaccgga ggctgaggga gaagccccga
     2041 gaccagcgaa ctgatggcga cagtcaggaa atggtgcggc tgctcctgca ggcaatccaa
     2101 ggttttgaga agaaagtgcg agtgatctat acgcagctca gtaagactgt ggtctgcaag
     2161 cagaaggctc tggagctgct gcccaaggtg gaggaggtgg tgagcttaat gagcgaggac
     2221 gagaagactg tggttcggct gcaggagaag cggcagaagg agctctggaa cctcctgaag
     2281 attgcttgta gcaaggtccg cggtcccgtc agcggaagcc cagacagcat gaacacgtcc
     2341 cgcctgagtc accccagcca gctgctgtcg cagccttgcc cagcccctga cagcttaccc
     2401 gaggccgtca agaagagcga agacctcgtg gctgaagcac acaccctgtg cacccagctg
     2461 gaaaacgtcc tacaggacac catgaaggac caggaccaga gcttaaggtc tctagactgg
     2521 agctggttgc agtcggggga ggaggagaag cacagcctgg agcgggcctc ctgacggtgg
     2581 gcggccctga ccctgccggg ctgcctggcc cgaggccccc ggggccccgc cgcgtcgcgt
     2641 ctggtgtcct cggcacccag atggagatct cgcttcccca gcagccatga ccatcaccgt
     2701 ggactgaggg tgcagccctc cttggcagtg ccagcagctt atctgcacgc tggacgtcct
     2761 ccgccacgga ggcccagcag acgaggatgc cgagcacggc gtctggggag gtggagccac
     2821 ggcagccact gcctctgcgc ggagagaagt gctccgagta cagtggctcc acagaccact
     2881 ggccacacgt caaactgact tttaggacga agtatgaatg gcacttggtg ctagctgtcc
     2941 tctcctgacc cctcctgatc tccagaggcc tcatccacct gtcttcacag ctaaggtttc
     3001 atctggatcc ggcttctctt gaaaccgtgg attcggccca gcccgatcct ccctcctctt
     3061 ctgacttcac ggctgctaac gttttccttc tgcctacgac cttgggccag gttgggtgag
     3121 tgctgctttc cccgtccaaa gtctctccag ccatagtgag tcgctggtgc caggagggga
     3181 gagcgtctcc cttcctgtgg gtcccaaaga gtccccggga gcaagctgcc atggagaaga
     3241 aggaaagaag aggaagatgt ctgtcaacca ccagcttgct gacccctgtg cccacacccc
     3301 ctgcccctag gtgcggcagg gttgacgggg cagttcccat ccctcgtgtc atccagcggt
     3361 attattaact ggatttatat tttaaaaaca gattctctat tttgtaacat gattcaagtc
     3421 ccacagtcta tttttataat acctctggtt gggacttctg aactcaaagt ccagctttaa
     3481 tggaaagttt tatgaaattg agtggtgcct gatcaaacag tgccagagca ccagcaaggc
     3541 ctcttggacg tttcacaaaa gctgctcctt cctgtaacag caggctcaga tgataacaaa
     3601 caggcaagtc tggttggaga agaaagtggg acgagaagag tttcacagag tgccttccat
     3661 ggaggcagta cagtgggttc cgtgtcaggg aagttgggga aacgcttcat gctttaactg
     3721 cctcttggag attcaccttg tgcactggtt tattaaagaa tctgaaagat ctattataat
     3781 aaactggctt aaatctacct aaa
//
LOCUS       XM_032618306            1521 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746708
            (LOC116746708), partial mRNA.
ACCESSION   XM_032618306
VERSION     XM_032618306.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..>1521
                     /gene="LOC116746708"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:116746708"
     CDS             1..>1521
                     /gene="LOC116746708"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1348..1350,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC116746708"
                     /protein_id="XP_032474197.1"
                     /db_xref="GeneID:116746708"
                     /translation="MGQTMTTLLSLTLSHWTEVRARAHNLSVEVRKGKWQTLCTSEWP
                     TFQTGWPPEGSFLLDKVGLVKSRVFNTGPHGHPDQIPYILVWEDLVLSPPPWVRPFVS
                     STGTSACAPAQSEILALKKTPDTEKSSAAPDPPKAIYPDLQSDLLLLDSPPPYPPALN
                     PMSPLGPPASQPSAPVGPPVMAERGGPSAGTRSRRAVSPDPTALPLREYGPPDNHGNR
                     PLQYWPFSSADLYNWKMHNPTFSENPQALTALIESLVFSHQPTWDDCQQLLQTLLTTE
                     ERQRVLLEARKNVLGANGQPTQLPNEIDAGFPLVRPNWDFNTLEGKEHLKMYRQALVA
                     GLHGAARRPTNLAKVREVTQGPQESPTVFLERLMEAFRRFTPYDPTSEEHKATIAMAF
                     IDQAAPDIRKKLQRLDGLQGFSLQDLVKEADKVYNKRETEEEREERKQKEQEAREVRX
                     DKRQERHLSKILATVVRGGNSRDRNRQEGRTTDRRRPLDKDQCAYCKEKGHWARECP"
     misc_feature    4..375
                     /gene="LOC116746708"
                     /note="Matrix protein (MA), p15; Region: Gag_MA;
                     pfam01140"
                     /db_xref="CDD:426076"
     misc_feature    <274..>636
                     /gene="LOC116746708"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    661..1281
                     /gene="LOC116746708"
                     /note="Gag P30 core shell protein; Region: Gag_p30;
                     pfam02093"
                     /db_xref="CDD:426597"
     misc_feature    1474..1521
                     /gene="LOC116746708"
                     /note="zinc finger; Region: ZnF_C2HC; smart00343"
                     /db_xref="CDD:197667"
ORIGIN      
        1 atgggacaaa ctatgacgac tcttctttct cttaccctaa gccactggac cgaagttagg
       61 gctagggccc acaacctttc ggtagaagta aggaaaggaa aatggcaaac gctgtgtacc
      121 tctgagtggc ctacatttca gacagggtgg ccacccgaag gatctttttt gttagataag
      181 gttgggctag tcaagtctag ggtctttaac acaggacccc acggacaccc agaccagata
      241 ccatatatct tggtctggga agatctagtt ctctccccgc ctccgtgggt ccggcccttt
      301 gtttcctcaa caggcacgtc tgcatgcgct ccagcacaat cggagatatt ggccctgaag
      361 aaaaccccag acacggaaaa gtcatctgct gccccggacc cgccaaaggc gatatatcct
      421 gacctgcagt ctgatttgct tcttctagat tccccacctc cttatcctcc ggccctaaat
      481 cccatgtcgc ccctaggacc cccagcttca caaccctccg caccagtagg gccacctgtt
      541 atggcggaaa gggggggtcc ctcggcgggc accagaagcc ggagggctgt ttccccggat
      601 cctactgctt taccccttag agaatatggc ccccccgata accacgggaa taggcccctt
      661 caatactggc ccttttcctc tgcagatctt tataattgga agatgcataa ccctactttc
      721 tctgaaaacc cacaggctct tactgctcta atagagtctc ttgtcttctc ccaccaaccc
      781 acctgggatg attgtcaaca gctcctccag actctcctca caactgagga gaggcaacgg
      841 gttctcctgg aggctagaaa gaatgtgtta ggcgccaatg gacaacctac ccagttgcct
      901 aatgagattg atgccggttt tccactcgtc aggccgaatt gggactttaa taccctggaa
      961 ggtaaggagc acctgaaaat gtatcgccag gctctggtgg cgggtctcca tggagcggcc
     1021 aggcgcccca cgaatttggc taaggtaaga gaggtaactc aggggcccca ggaatcacca
     1081 accgtgttcc tagaacgctt aatggaggct tttagacgat tcactcctta tgatccaacc
     1141 tctgaggaac ataaggccac catagcaatg gcctttattg accaggcggc ccctgatatt
     1201 agaaagaagt tacaaaggct ggatggccta caaggtttct cccttcagga cttagtaaaa
     1261 gaggcagata aggtatataa taagagggag acagaagaag aaagagaaga aagaaagcag
     1321 aaggaacaag aggctcgtga ggtaagatga gataagaggc aagaaagaca tttgagtaag
     1381 atactggcca ctgtagtcag aggaggaaac agtagagaca gaaatagaca ggaagggcga
     1441 acaacggata gaaggcggcc attagacaag gaccaatgtg cctactgtaa agaaaaaggt
     1501 cattgggcaa gagaatgccc t
//
LOCUS       XM_032618307            9376 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus trafficking protein particle complex 11
            (TRAPPC11), transcript variant X1, mRNA.
ACCESSION   XM_032618307
VERSION     XM_032618307.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9376
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9376
                     /gene="TRAPPC11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 2 Proteins, and
                     89% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746709"
     CDS             283..3714
                     /gene="TRAPPC11"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11
                     isoform X1"
                     /protein_id="XP_032474198.1"
                     /db_xref="GeneID:116746709"
                     /translation="MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
                     RADRVPISFKVLPGDHEYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
                     LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAA
                     LCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
                     HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINY
                     KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAI
                     KLGLTAIQTQNPGFYYQQAAYYAQERKQLTKTLCNHEASVAHPSPDPLETQTGVLDFY
                     GQRPWRQGILSFDLSDPEKEKVGILAIQLKERSVVHSEIIITLLSNAVAQFKKYKCPR
                     MKSHLMVQMGEEYYYAKDYTKALRLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQ
                     LKDYITYSLELLGRASTLKDDQKSRIEKNLINVLMNESPAPEPDCDILAVKTAQKLWA
                     DRISLAGSNLFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDIYLKADCPHPIRFSKL
                     CVSFNNQEYNQFCVIEEASKTSDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKI
                     EITSLDLVLGSEAGRCVILNWQGGGGDAASTQEALQAARSFKRRPRLPDSELHWDSIV
                     IQASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQSHEKTCIRDVKLTAGLKPGQD
                     ANLTQKTHVTLHGTEPCDESYPALLTDIPVGDLHPGEQLEKMLYVRCGTVGSRMFLVY
                     VSYLINTTIEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLM
                     TDLLSASPWALTIVSSELQLAPSMTPVDQLESQVDNVVLRTSESASECFCLRCPSVGN
                     VEGGVATGHYIISWKRTSAMDDIPVISTVITLPHVIVENIPLHVNADLPSFGRVRESL
                     PVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQ
                     QLPSLNVNLLRFPNFTNQLLRRFIPTSIFVKVRLRHFLLFKFTVLKTNKRRCFFM"
     misc_feature    1069..1845
                     /gene="TRAPPC11"
                     /note="Foie gras liver health family 1; Region:
                     Foie-gras_1; pfam11817"
                     /db_xref="CDD:463359"
     misc_feature    3388..3567
                     /gene="TRAPPC11"
                     /note="Gryzun, putative Golgi trafficking; Region:
                     Gryzun-like; pfam12742"
                     /db_xref="CDD:403829"
ORIGIN      
        1 ggggcggtgg tggtagggac ggcccccggc gttttgtgac acccacaccc ccccccgcct
       61 gcttcccctg gttctccccc ggctggcggc gaccggccac agctgcagcg ggctcggggc
      121 gtgcggcctg ggagatctgg aaatttctcc tataggctgt catcgagatc catacaacct
      181 ctgcacttgt cctttgctga tattcttccc attttttgcc accgaatagg cacaaccatt
      241 tcaaatgcca acgcttttaa gaattttcct gacaccttga ccatgagccc cacacaatgg
      301 gacttccctg tggaattatg ttgtcggcct atggcttttg ttactctcac aggcctggat
      361 gtggtttata atgctgtcca tcgagctgtc tgggatgctt tctgtgccaa tcggagggct
      421 gatcgggtac cgatttcttt caaggtgctc ccaggtgacc atgagtatcc caaatgtaga
      481 cccaagagaa cttcgtatga atggtacatt cccaaaggga tcttgaagac aggctggatg
      541 aataaacatc tgaatctggt gccagccctg gtggttgtgt tctacgaact agactgggat
      601 gagccccagt ggaaagaaaa gcagtctgag tgcgcgacca gagtggaaat agttaggcag
      661 agtttacaag ggagaaacac aaaagttgca gtggttctga ttcagaagaa aacccctttg
      721 cccccaggag aagatgtcat tgcttcagaa agagctgcag ccttgtgcaa tgcgtgtgaa
      781 ctctcgggga agtctttgtt tgtactgccc catacagacc accttgtggg ctatattata
      841 agattagaaa acgcctttta tgaacatgca cagacttatt actacactga gattagaaga
      901 gtgaaatctc ataaagaatt tttgaataaa acaacacacc agcttttatt tgttagacat
      961 cagttcaaaa tagctttctt cagtgagttg aaacaagata cacaaaatgc tctgaagaat
     1021 tacaggaccg cctataatct tgtacatgaa ttgagagccc atgaaactaa tattctggaa
     1081 attaagacca tggcaggatt tataaactac aagatctgta ggctgtgttt tcagcacaac
     1141 accccactgg acgcaattgc tcagttccga aagcacatcg acttgtgtaa gaaaaaaatc
     1201 ggaagtgcag agttgtcttt tgagcacgct gcatggatgt ctaaacaatt ccaggccttt
     1261 ggagatttat ttgatgaagc tatcaagttg gggttgacag ctattcaaac tcagaatcct
     1321 ggtttctatt accagcaggc agcatactat gcccaggagc ggaaacagct tacgaaaacc
     1381 ctctgtaacc atgaagcttc tgtagcgcac cccagtcctg atcccctaga aacacagaca
     1441 ggagttcttg acttctacgg acagcgaccg tggcgacaag gaatcctaag ttttgatctt
     1501 tctgatcctg aaaaggagaa ggtggggatt cttgccattc agctgaagga gagaagtgtt
     1561 gttcactctg aaataataat aactcttctg agcaatgctg ttgcacagtt taagaagtat
     1621 aagtgtccaa gaatgaaaag tcatctgatg gttcaaatgg gagaggaata ttattatgca
     1681 aaggattata ccaaagcttt gaggttgctg gattatgtga tgtgtgatta tcggagtgaa
     1741 ggatggtgga ccctgctcac gtctatactg accacagctc tgaagtgttc ctacctcatg
     1801 gcccaactga aagattacat cacttattcc ctagaacttc ttggaagagc ttcaactctg
     1861 aaagatgacc agaaatctcg gatagaaaag aacctcataa acgttttaat gaatgaaagt
     1921 cctgctcctg aacctgactg tgacatatta gctgtgaaaa ctgctcagaa gctgtgggcg
     1981 gaccgaattt ctctggccgg cagcaatctt ttcacaatag gcgtacagga ctttgtgcca
     2041 tttgtgcaat gcaaagccaa gttccacgcc ccaagttttc atgtcgacgt tcccgtgcag
     2101 ttcgatattt atctgaaggc tgactgccca catcccatta ggttttctaa gctctgtgtc
     2161 agctttaata atcaggaata caaccagttc tgtgtaatcg aagaagcatc caagacgagt
     2221 gacgttttag aaaatttgac tcagggaaag atgtgcttag ttcctggtaa aacaagaaag
     2281 tttttattta aatttgtggc aaaaactgaa gatgtgggaa agaaaattga gatcacatcc
     2341 ttggatctgg ttctgggcag cgaggcagga agatgcgtga tcttgaattg gcagggggga
     2401 ggaggagatg ccgcttccac ccaggaagcc ttacaggctg cccgttcttt caaaagaagg
     2461 cccaggctcc ccgacagcga gcttcactgg gacagcatag tgatccaggc gagcaccatg
     2521 atcatttcca gagttccaaa catttctgtc catctgcgac atgaccctcc tgccctgact
     2581 aacgaaatgt actgtttggt tgtgactgtg caatcccatg agaagacctg catcagagac
     2641 gtgaagctca ctgctggttt aaaacccgga caggatgcca acttaactca gaaaactcat
     2701 gtgactcttc atggaacaga accgtgtgat gagtcctacc cggctctact cacggacatt
     2761 cctgtcggag acctacatcc cggggagcag ctggaaaaaa tgttatatgt tcgctgtgga
     2821 acagtgggct caagaatgtt tcttgtgtat gtttcttacc tgatcaatac aactattgaa
     2881 gaaaaagaaa ttgtttgcaa gtgtcacaag gatgaaactg taacaataga aaccgtcttt
     2941 ccatttgacg ttgcagttaa atttgtttct acaaagtttg agcacctaga aagggtttat
     3001 gccgacatcc ccttcctgct gatgacggac ctgttgagtg cctcgccctg ggccctcacc
     3061 atcgtctcca gtgagctgca gcttgctcct tccatgacgc ccgtggacca gctggagtcc
     3121 caggtggaca acgttgtctt acggacttca gagagtgcca gtgaatgctt ttgtcttcgt
     3181 tgcccatctg ttggaaatgt tgaaggtgga gtagcaactg ggcattatat tatctcctgg
     3241 aagaggactt cagccatgga cgacatccct gtcatcagca cggtcatcac tctgccacac
     3301 gtgattgtag aaaatatccc tctccatgtg aacgcagatc tgccatcatt cgggcgtgtt
     3361 agagagtcgt taccagtcaa gtatcacctc cagaataaga ctgacttagt tcaagatgtg
     3421 gagatttctg tggagcccag tgatgccttc atgttctcag gtcttaaaca gattcgatta
     3481 cgtatcctcc ctggcaccga acaggaaatg ttgtataatt tctaccctct gatggccggg
     3541 tatcagcagc tgccatctct caacgtcaac ttgctcaggt tccccaactt cacaaatcaa
     3601 ctgctcaggc gttttatacc caccagtatt tttgtaaagg tgaggcttag acattttctg
     3661 ctttttaaat tcactgtctt gaaaactaac aaaagaagat gttttttcat gtaaacttca
     3721 ctaagtattt ggagactaac aggatagggc tttggctgtt actgtataaa tttggcaata
     3781 ttgctattca tttctgtaaa gttattattt tatagatttt ttttttagat ttctatttta
     3841 tagatatttt tagatgtaac ttcaaagatt tttattccct tgggtaaagg tttatctttc
     3901 tggcatcctt aaacatggtt tttctttggc gtttagtaaa gtatatttct atttttgttt
     3961 ttcttttttt tatttcttta ttttaatatt ttgtttactt tttaaaaata tgttttaaaa
     4021 ttgtagttaa tttgtaacta ttttttaatc aaaatggatt aactttctga atacagtccc
     4081 tgaacttttc tgattctaac tatgtaatac tactggattt gggtcttttc tgtaaacgat
     4141 caccggtcag aaactatact ctggtttaat gttttgattt tttaacagtg atacgatttc
     4201 caggttcctt cagtaaagga ccctgtagga ttgtcatcgc tttgcctcgg tttaagccac
     4261 tcttgatgcc taaattaagg ctgtttctcc agatagttct ggtttccctt ggtaaccaga
     4321 gatacatgaa catatatgaa tcctgtgtgt tctctttttt tattgttgtt gttgttgttg
     4381 tgtttttttt taagtaattg atagaggatc acgctgggtt ttttttgttt tgttttgttt
     4441 tgttttttta tttttggctg cactgggtct tcgccgctgt gtgtgggctt tctctagttg
     4501 tggccagcgg gggctactct ttgttgcagt gcgcgggctt ctcattgcag tggcttctct
     4561 tgttgtggag catgggctct aggcgtgtgg gcttcagtag tgtggcatgc gggctcagta
     4621 gttgtggctc gctggctcta gagcgcaggc tcagtaactg tggcgcgtgg gcttagttgc
     4681 tccgcgcacg tgggatcttc ccagaccagg gctcaaaccc gtgtcccctg cattggcagg
     4741 tgggttctta accactgtgc caccagggaa gtcccttgtg tgttctcttt ttattttaag
     4801 ttttaccccc tttttggatg acaagttaca atttccgttt ttgtatctgt caggctttgg
     4861 ggaagccttg tttatataat ctgggatttg gtaaattgta agttagcctg tgttcatgta
     4921 tgtgtcataa tcatcccacc tgttaccttt ctagacttac acagttttgt tgtgttttgc
     4981 ttttgcatct gcaaaaaaaa tcatttttat taaccctcta agcttctatt gtataccaaa
     5041 cttttatttt tttattttta tttttttaac atctttattg gagtataatt attttacaat
     5101 ggtgtgttag tttctgcttt acaacaaagt gaatcagcta tacatatatc cacatatccc
     5161 ctccctcttg cgtctccctc ccaccctccc tatcccacct ctctaggtgg tcacaaagca
     5221 ccgagctgat ctccctgtgc tatgcggctg cttcccacta gctatctgtt ttacatttgg
     5281 tagtgtatat aagtccgtgc cactctctca cttcgtccca gcttaccctt ccccctcccc
     5341 atgtcctcaa gtccattctc tacgtctgcg tctttattcc tgtcctgccc ctaggttttt
     5401 cagaaccttt ttttttttta gattccatat atatgtgtta gcatacggta tttgtttttc
     5461 tctttctgac ttacttcact ctgtatgaca gtctctaggt ccatccacct cactacaaat
     5521 aactcaattt cgtttctttt tatggctgag taatattcca ttgtatatat gtgccacatc
     5581 ttctttatcc attcgtctgt tgatggacac ttaggttgct tccatgtcct ggctattgta
     5641 aacagagctg caatgaacat gtggcacatg actctttttg aatgatggtt ttctcagggt
     5701 gtatgcccag tagtgggatt gctgggtcgt atggtagctc tatttttagt tttttaagga
     5761 acctccatac tgttctccat agtggctgta tcaatttaca ttcccaccaa gagtgcaaaa
     5821 gggttccctt ttataccata cttttaaatt attatttttt aaatctcata attttggatc
     5881 tcctgtgttt aaacagtggc ctttttgttt ttttaagact ttattttttt tagagcagtt
     5941 tcaggttcac agcaaaattg agaggaaggt acagagattt cccatatacc gcccgcctgc
     6001 acacagcagt ggcttttttt aacatttcca cctcatcaca ttctaaagcc atttccctta
     6061 ctgttcctca ctgtcatgtc tgaggttacc ctgcagggga gaagtcatga ctgggttggg
     6121 gagcggcggt gggatgggtg ctctctgatg tccttttagc tgtttgaccc tccgaagttt
     6181 gctcttccta aactcagaag tatggctttc atcagcctga aagtatttat cgatgtacag
     6241 acctgatcgt attctagccg aacaaacaga gcttgtttga gatgtgagag ttggtcatgt
     6301 tgaggaacca gcgttttgtt cccatcaatt aatctctttc gttcttttcc ctgaagtgct
     6361 cagaacaccc aaactaatcc agataaatct agttccgtct tctgattttc tttcacagta
     6421 aacctcttct gggtggtggt gttttaagtc cataaggaaa ggttccagaa aagtaaacat
     6481 tcataagttt taacctaatc agcacaccct tttctaactg ccacgatctt ttctctaaat
     6541 ttaagaacca tcttctagta acttgactgc tgctaaaatc attgactgca ctattcagag
     6601 ccagctcctt tatcaactgg gaaaactcaa taattaaaat tgttttacct gtcacactaa
     6661 gggcagtgaa tgaggattac cctttttcca cttcatgaac aatcaccgac taaaatttta
     6721 catcccgtca tgcctttatt aaactttaga cctgtgctat tccagtgtgg tagccacgag
     6781 cacatgtgcc tattgagatt caaattaatt aaaacttaat ttagggcttc cctggtggcg
     6841 cagtggttga gagtccgcct gccgatgcag gggacacggg ttcgtgcccc ggtctgggag
     6901 gatcccacgt gccgcggagc ggctgggccc gtgagccatg gccgctgagc ctgcgcgtcc
     6961 ggagcctgtc ctccgcaacg ggagaggcca caacagtgag aggcccgcgt aacgcataaa
     7021 aaaaaaaaaa aaaaaaaaaa aaacttaatt taaagcttag ttaccagttg cactagccgt
     7081 atctcaggcg ctcagtaggc gtgcagctag cagcactgat gtggagcgtt tcctcttcac
     7141 ggagagtctt gttggacagt gccgcctaga gcacgcttgg atccatattt ttcttccttc
     7201 gcaaaataga tttgttttct tattgcatga taagaaaaca gatttattgt tctctgtccc
     7261 tgtttgtaaa gctgtgtttg ttaaggattt gacctggtgg agccatttat tctgtttcta
     7321 aaactaaacg tcctccatga gtcctacaaa ttacatgacg tatgaaagac cagcaacctt
     7381 ttctttcgtt catcccattc agatggctgt tgactcacac acacatgcac acatgcatac
     7441 atacgtacat aaagctgccc agcaacagat cagagcggga gcgccccctt cgctgctcca
     7501 gggaacccac aggaatcagc tgcttgaaac acagcagtgg gctgtggtgc tgaggttgca
     7561 atgctaatct agttcatgtc ccagacaccg tctctcatgc ttttcccaca gaggtctgct
     7621 aacgtacagc agtaaagtag tcatttgcaa gaatttcatt cttttagcta ctcgatgacg
     7681 ctctggggtg ttgctgacct gtcagaaatt ttacacctaa aaccagtcat gatacctttt
     7741 aatccctctt agtttttctt cttctgatgt gatgttttaa attttttcaa tcactgaact
     7801 tcgagaaagg gaaattttgt ttttatctgc tgcttcaatc cttgcaatct tcgttgttaa
     7861 taccgtagag ttcattgtga atcacttttt ctcaaacagg agattgggga gccttgaatc
     7921 ccaaagagct tgctgtcagc tgaggtttgt ggcctgctta aagcttggga cacaggccga
     7981 gcaagggaga gagaggatag agcgttaccg cttgagcagg aatggtggcc atgttccctt
     8041 tcacgcgcgg tgcattgata gattggtggt agctgccaga acaccgggtt aagagaaaag
     8101 tagtgacgag gtagattccg cgggtgggtg tgatcggctg gtgatgtctg ccactgggca
     8161 cagagggagt gtggcagcac ggaggctgtg ccgtcaccat gcccggctca cgtgaagaaa
     8221 gagggtgggg ggaaaggagg aaagcaacac agtttgtttg ggtgcttgca cacgtctatt
     8281 ctgttctcgt gaaacagttc caagaacgtc aaaatctctt caattaatag cgctactgtt
     8341 gccattacca ttttgtaaac ccgctttgtt ttccactcgg cagccccagg gcagactcat
     8401 ggacgacgcc tccactgctg ccgcgtgatg ttcaggacgg gccttggctg ttcctacgga
     8461 gacgccagac ggaagtgtct gcgttttccg tggtgaaccg tagcttgatc gtggtgcaag
     8521 ttaatctttg ctgattatta atggatgtta tagcaactct tcagaggaac tcatgcttaa
     8581 aatattagga aaatccatcc tcttttatag ttttcactaa taaatatttg aaatctgtca
     8641 gtgtgacgtg aaaggatgtc agtcctttgt tactgttgaa agtcatttta tggatagtaa
     8701 cgtcttttcg aagtaaggga tttgcacttg cagtggccga ggaaagataa gcatctgaaa
     8761 tatgactgga caaggggaac acgtgccagt gtctgcccca ggaaagttct gaatccccag
     8821 gtgtctcttt cagagttggc taaaccggag gtaaatccat cctcataaat ctagtgtgtg
     8881 ctcagaatac atacacagga accggaaagt agtcacgtga ctgatgcaga aaacttccag
     8941 aaagttttaa tcagagcaat ttaagatgtc taaaaaatat ctttgcttac catcaaaaca
     9001 tgtcaaatag gttcagcttg cagccaaaac acggatcatt tatgaagcag gtttgtattt
     9061 ataagtatgt taacaagatc cttacccatc agtatctgaa ctgcaagatt ctgattctaa
     9121 gcataattcc ctaaactaaa agtttttgag aaaggtgcaa tgtctaaata agagatttta
     9181 gttatgttgt gcgatttgaa aagaactatt taaaacttct gaaaattcat gtaaataaaa
     9241 atcatattgt gaaaatcctc tttgttaaaa tatcttaatt taaaactacc ccatttccca
     9301 gagattttta ttgtttaaaa gtctaggagt ttcaaaaagg aaaaggatca tgggaataaa
     9361 tatgttctct ttcaga
//
LOCUS       XM_032618308            6375 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus trafficking protein particle complex 11
            (TRAPPC11), transcript variant X2, mRNA.
ACCESSION   XM_032618308
VERSION     XM_032618308.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6375
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6375
                     /gene="TRAPPC11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746709"
     CDS             176..3589
                     /gene="TRAPPC11"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11
                     isoform X2"
                     /protein_id="XP_032474199.1"
                     /db_xref="GeneID:116746709"
                     /translation="MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
                     RADRVPISFKVLPGDHEYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
                     LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAA
                     LCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
                     HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINY
                     KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAI
                     KLGLTAIQTQNPGFYYQQAAYYAQERKQLTKTLCNHEASVAHPSPDPLETQTGVLDFY
                     GQRPWRQGILSFDLSDPEKEKVGILAIQLKERSVVHSEIIITLLSNAVAQFKKYKCPR
                     MKSHLMVQMGEEYYYAKDYTKALRLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQ
                     LKDYITYSLELLGRASTLKDDQKSRIEKNLINVLMNESPAPEPDCDILAVKTAQKLWA
                     DRISLAGSNLFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDIYLKADCPHPIRFSKL
                     CVSFNNQEYNQFCVIEEASKTSDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKI
                     EITSLDLVLGSEAGRCVILNWQGGGGDAASTQEALQAARSFKRRPRLPDSELHWDSIV
                     IQASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQSHEKTCIRDVKLTAGLKPGQD
                     ANLTQKTHVTLHGTEPCDESYPALLTDIPVGDLHPGEQLEKMLYVRCGTVGSRMFLVY
                     VSYLINTTIEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLM
                     TDLLSASPWALTIVSSELQLAPSMTPVDQLESQVDNVVLRTSESASECFCLRCPSVGN
                     VEGGVATGHYIISWKRTSAMDDIPVISTVITLPHVIVENIPLHVNADLPSFGRVRESL
                     PVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQ
                     QLPSLNVNLLRFPNFTNQLLRRFIPTSIFVKLRGAAFTKNTVAEVWWGM"
     misc_feature    962..1738
                     /gene="TRAPPC11"
                     /note="Foie gras liver health family 1; Region:
                     Foie-gras_1; pfam11817"
                     /db_xref="CDD:463359"
     misc_feature    3281..3460
                     /gene="TRAPPC11"
                     /note="Gryzun, putative Golgi trafficking; Region:
                     Gryzun-like; pfam12742"
                     /db_xref="CDD:403829"
ORIGIN      
        1 tctcgcttgt gggcaccgga acaggggcgg tggtggtagg gacggccccc ggcgttttgt
       61 gacacccaca cccccccccg cctgcttccc ctggttctcc cccggctggc ggcgaccggc
      121 cacagctgca gcgggctcgg ggcgtgcggc ctggaatttt cctgacacct tgaccatgag
      181 ccccacacaa tgggacttcc ctgtggaatt atgttgtcgg cctatggctt ttgttactct
      241 cacaggcctg gatgtggttt ataatgctgt ccatcgagct gtctgggatg ctttctgtgc
      301 caatcggagg gctgatcggg taccgatttc tttcaaggtg ctcccaggtg accatgagta
      361 tcccaaatgt agacccaaga gaacttcgta tgaatggtac attcccaaag ggatcttgaa
      421 gacaggctgg atgaataaac atctgaatct ggtgccagcc ctggtggttg tgttctacga
      481 actagactgg gatgagcccc agtggaaaga aaagcagtct gagtgcgcga ccagagtgga
      541 aatagttagg cagagtttac aagggagaaa cacaaaagtt gcagtggttc tgattcagaa
      601 gaaaacccct ttgcccccag gagaagatgt cattgcttca gaaagagctg cagccttgtg
      661 caatgcgtgt gaactctcgg ggaagtcttt gtttgtactg ccccatacag accaccttgt
      721 gggctatatt ataagattag aaaacgcctt ttatgaacat gcacagactt attactacac
      781 tgagattaga agagtgaaat ctcataaaga atttttgaat aaaacaacac accagctttt
      841 atttgttaga catcagttca aaatagcttt cttcagtgag ttgaaacaag atacacaaaa
      901 tgctctgaag aattacagga ccgcctataa tcttgtacat gaattgagag cccatgaaac
      961 taatattctg gaaattaaga ccatggcagg atttataaac tacaagatct gtaggctgtg
     1021 ttttcagcac aacaccccac tggacgcaat tgctcagttc cgaaagcaca tcgacttgtg
     1081 taagaaaaaa atcggaagtg cagagttgtc ttttgagcac gctgcatgga tgtctaaaca
     1141 attccaggcc tttggagatt tatttgatga agctatcaag ttggggttga cagctattca
     1201 aactcagaat cctggtttct attaccagca ggcagcatac tatgcccagg agcggaaaca
     1261 gcttacgaaa accctctgta accatgaagc ttctgtagcg caccccagtc ctgatcccct
     1321 agaaacacag acaggagttc ttgacttcta cggacagcga ccgtggcgac aaggaatcct
     1381 aagttttgat ctttctgatc ctgaaaagga gaaggtgggg attcttgcca ttcagctgaa
     1441 ggagagaagt gttgttcact ctgaaataat aataactctt ctgagcaatg ctgttgcaca
     1501 gtttaagaag tataagtgtc caagaatgaa aagtcatctg atggttcaaa tgggagagga
     1561 atattattat gcaaaggatt ataccaaagc tttgaggttg ctggattatg tgatgtgtga
     1621 ttatcggagt gaaggatggt ggaccctgct cacgtctata ctgaccacag ctctgaagtg
     1681 ttcctacctc atggcccaac tgaaagatta catcacttat tccctagaac ttcttggaag
     1741 agcttcaact ctgaaagatg accagaaatc tcggatagaa aagaacctca taaacgtttt
     1801 aatgaatgaa agtcctgctc ctgaacctga ctgtgacata ttagctgtga aaactgctca
     1861 gaagctgtgg gcggaccgaa tttctctggc cggcagcaat cttttcacaa taggcgtaca
     1921 ggactttgtg ccatttgtgc aatgcaaagc caagttccac gccccaagtt ttcatgtcga
     1981 cgttcccgtg cagttcgata tttatctgaa ggctgactgc ccacatccca ttaggttttc
     2041 taagctctgt gtcagcttta ataatcagga atacaaccag ttctgtgtaa tcgaagaagc
     2101 atccaagacg agtgacgttt tagaaaattt gactcaggga aagatgtgct tagttcctgg
     2161 taaaacaaga aagtttttat ttaaatttgt ggcaaaaact gaagatgtgg gaaagaaaat
     2221 tgagatcaca tccttggatc tggttctggg cagcgaggca ggaagatgcg tgatcttgaa
     2281 ttggcagggg ggaggaggag atgccgcttc cacccaggaa gccttacagg ctgcccgttc
     2341 tttcaaaaga aggcccaggc tccccgacag cgagcttcac tgggacagca tagtgatcca
     2401 ggcgagcacc atgatcattt ccagagttcc aaacatttct gtccatctgc gacatgaccc
     2461 tcctgccctg actaacgaaa tgtactgttt ggttgtgact gtgcaatccc atgagaagac
     2521 ctgcatcaga gacgtgaagc tcactgctgg tttaaaaccc ggacaggatg ccaacttaac
     2581 tcagaaaact catgtgactc ttcatggaac agaaccgtgt gatgagtcct acccggctct
     2641 actcacggac attcctgtcg gagacctaca tcccggggag cagctggaaa aaatgttata
     2701 tgttcgctgt ggaacagtgg gctcaagaat gtttcttgtg tatgtttctt acctgatcaa
     2761 tacaactatt gaagaaaaag aaattgtttg caagtgtcac aaggatgaaa ctgtaacaat
     2821 agaaaccgtc tttccatttg acgttgcagt taaatttgtt tctacaaagt ttgagcacct
     2881 agaaagggtt tatgccgaca tccccttcct gctgatgacg gacctgttga gtgcctcgcc
     2941 ctgggccctc accatcgtct ccagtgagct gcagcttgct ccttccatga cgcccgtgga
     3001 ccagctggag tcccaggtgg acaacgttgt cttacggact tcagagagtg ccagtgaatg
     3061 cttttgtctt cgttgcccat ctgttggaaa tgttgaaggt ggagtagcaa ctgggcatta
     3121 tattatctcc tggaagagga cttcagccat ggacgacatc cctgtcatca gcacggtcat
     3181 cactctgcca cacgtgattg tagaaaatat ccctctccat gtgaacgcag atctgccatc
     3241 attcgggcgt gttagagagt cgttaccagt caagtatcac ctccagaata agactgactt
     3301 agttcaagat gtggagattt ctgtggagcc cagtgatgcc ttcatgttct caggtcttaa
     3361 acagattcga ttacgtatcc tccctggcac cgaacaggaa atgttgtata atttctaccc
     3421 tctgatggcc gggtatcagc agctgccatc tctcaacgtc aacttgctca ggttccccaa
     3481 cttcacaaat caactgctca ggcgttttat acccaccagt atttttgtaa agcttcgtgg
     3541 agcagctttt actaagaaca cggttgcgga ggtatggtgg ggtatgtagg actggaaata
     3601 gatccgcctt ctagagccgg cgctgcgcgt ctgcgggaag actggggcgg tgacgggctg
     3661 ggaggacgtg aattccctgt tatcacagct ttacaggtgg agaccacagg agtttgtcgg
     3721 attgtctagg gccaaatccc agccccggtg actttgttca tgttgccctt tgtttgtctc
     3781 tgctcttacc tgtaagatgt ggttgatggt aatactgtct catagacttg gtatgagaat
     3841 gataaaaatg aaatacacaa gaggaaccgt aaacgaaaat ttcatgaact aatactttct
     3901 gtatgctctt acattttata tcccactctg ttttgttaaa aatattcctg gtttaacctg
     3961 ctgaattgat tgcatgactc actaagggga tgtaacctga tgtttgaaaa attcaaaggt
     4021 ccatctcatg ccgtgcttat gtaataaagg tctcatgtgt taacacggcc atcgtcaaac
     4081 acagagtact cagtgcgtgt tagaacggat ggatcattgg cgtccacttt aaaattgttt
     4141 gccttgatgt cagtgtgatt tgtgtgagtg taaatacacc acatagacag gtctgcgctt
     4201 tccctcaata gcgtaatcct ttctcaacca ggaattctcc catgtcgttc attttactgt
     4261 gaatgtattc tattcacttg tctttaaatt gcaagtctta attcagaaat acatgaaatc
     4321 atgatcttcc tgggtcccca gaacaaaact gtcacagtat tgcaggagct gttgactcac
     4381 tgaggttaca agtgtccagc aggaactcag agtctttccc ttcccgcctc tgcaccagcc
     4441 acagtcatct gtccctcatg agaggaccct gtcttctgtc ttagtaccgt gttgccattt
     4501 gattctcagt attactcctt accagtatta tgcaccactc aggggtataa atttttaaat
     4561 aaagcattta aaatttggaa tttgggggag ctatgtatta aagtttggcc cctgattctt
     4621 gaaggtaaga gccggtggat aatcaatgtt gcgtgttacc aagaggatga ggatggtatt
     4681 gactttggca taaaattaat tttccaattt gcttaatttt atatatctgt gatcctaaaa
     4741 gtgcaacttc aactcagttt tcctcagaaa gtcttagatt ctttatgctt gacttcttct
     4801 ttttattaag aggctttcca gagcacagct cttacattga atttttaaaa atgtcttcac
     4861 attacttgaa aaaaaaaaag attctttacg ttcattttca ttcagtcatt tctttcatgg
     4921 cccattaata actccaccca gaatattaaa agcctctttc ttgatactgt tcttaacaat
     4981 acgtgttaag gaatctgagc tgtagggctt ccctggtggc gcagtggtta agaatccacc
     5041 tggcagttgg agcctttggt gtgcgaccaa gctttgctcc cttccagttg ccatggccgt
     5101 gggagggacg tcatggcccg ttacccctgt tctctccttt gtgccggcac aaatgccatg
     5161 ccacggcctt ggcaccgggg ctgcaaggga ttgggtttgg tgccctaacg gagcccatgg
     5221 cttcaggaca ggggtcccca ccctcagaag agggagtgag acaggtgggc tataagatgt
     5281 cagcagaggc aggaacgcgc ggtggttaac gccgatcttc caggccccag acttcctggt
     5341 ttttcatctt gcctcctact cgctccgtga acgcggactg tttgtttaac cttccccctg
     5401 taaagcaagg atgcagatat ccacaccact gtatcagtta tctgttgctg aagagcgatg
     5461 ctactacaca cacagtggct tgaaacaaca catatatatt gtctgcagtt tccgtgggtc
     5521 cggtatccag gcacagctca gccaggtcgt cagcaagact gaagtcaaag ggtctggcag
     5581 ggctgaggtc tcatctgaga cttgactggg ggaggatcca ctctcaagct caccgaaggt
     5641 gttagcaaaa tgtgtgacct tgtggtcata ggaccaaggg actcattttc ttcttggctg
     5701 gtgaccaaag gccacttgct ttctcaaagc cagccggggg ggagaggctc cagcaagcca
     5761 ggcactgtaa tcgcacacgt tatcatgtcc cccctgctgt attctagtga gtaaacgcaa
     5821 ggcccaggtc ccacccacca ctcactccaa ggtatgggtg gggtcatgac acaaaggtat
     5881 gaacacagaa gatggggatc ctggggtcac ctttagagtg tgtccaccac agtgcctcat
     5941 agggttcttg tgaggaggca gtgagttgat acacatcagg ctcttagaag aggacccttt
     6001 ctcaggaagc acagtgagtt ggttgtggtg gagctgctgg tgttaccacc atcagaagaa
     6061 gatgcctcta acttgtactt gctcttggaa agtctttgaa cagtctttag ggaatctggg
     6121 atgacggaat tcaatttaaa caaacaactg caatagttaa taaatgatat aattccaata
     6181 accactctca tttaatttca ttttcttagt tggagattgc atggcgagtg ggaaatatgc
     6241 aaggtttgga gtttgaaaag cagtgaattc acaggcagct ttctctgcac tacacaaatg
     6301 ttggctgtca tcttcacttc ttaaactgga ttttacaaat gattgggtat tttgtaatta
     6361 cgaggtttaa atatt
//
LOCUS       XM_032618309            4556 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus trafficking protein particle complex 11
            (TRAPPC11), transcript variant X3, mRNA.
ACCESSION   XM_032618309
VERSION     XM_032618309.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4556
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4556
                     /gene="TRAPPC11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 25 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746709"
     CDS             207..3608
                     /gene="TRAPPC11"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11
                     isoform X3"
                     /protein_id="XP_032474200.1"
                     /db_xref="GeneID:116746709"
                     /translation="MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
                     RADRVPISFKVLPGDHEYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
                     LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAA
                     LCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
                     HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINY
                     KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAI
                     KLGLTAIQTQNPGFYYQQAAYYAQERKQLTKTLCNHEASVAHPSPDPLETQTGVLDFY
                     GQRPWRQGILSFDLSDPEKEKVGILAIQLKERSVVHSEIIITLLSNAVAQFKKYKCPR
                     MKSHLMVQMGEEYYYAKDYTKALRLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQ
                     LKDYITYSLELLGRASTLKDDQKSRIEKNLINVLMNESPAPEPDCDILAVKTAQKLWA
                     DRISLAGSNLFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDIYLKADCPHPIRFSKL
                     CVSFNNQEYNQFCVIEEASKTSDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKI
                     EITSLDLVLGSEAGRCVILNWQGGGGDAASTQEALQAARSFKRRPRLPDSELHWDSIV
                     IQASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQSHEKTCIRDVKLTAGLKPGQD
                     ANLTQKTHVTLHGTEPCDESYPALLTDIPVGDLHPGEQLEKMLYVRCGTVGSRMFLVY
                     VSYLINTTIEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLM
                     TDLLSASPWALTIVSSELQLAPSMTPVDQLESQVDNVVLRTSESASECFCLRCPSVGN
                     VEGGVATGHYIISWKRTSAMDDIPVISTVITLPHVIVENIPLHVNADLPSFGRVRESL
                     PVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQ
                     QLPSLNVNLLRFPNFTNQLLRRFIPTSIFVKPQGRLMDDASTAAA"
     misc_feature    993..1769
                     /gene="TRAPPC11"
                     /note="Foie gras liver health family 1; Region:
                     Foie-gras_1; pfam11817"
                     /db_xref="CDD:463359"
     misc_feature    3312..3491
                     /gene="TRAPPC11"
                     /note="Gryzun, putative Golgi trafficking; Region:
                     Gryzun-like; pfam12742"
                     /db_xref="CDD:403829"
ORIGIN      
        1 tcctgtgcct gcgcggatgg gccctgggaa gtctcgcttg tgggcaccgg aacaggggcg
       61 gtggtggtag ggacggcccc cggcgttttg tgacacccac accccccccc gcctgcttcc
      121 cctggttctc ccccggctgg cggcgaccgg ccacagctgc agcgggctcg gggcgtgcgg
      181 cctggaattt tcctgacacc ttgaccatga gccccacaca atgggacttc cctgtggaat
      241 tatgttgtcg gcctatggct tttgttactc tcacaggcct ggatgtggtt tataatgctg
      301 tccatcgagc tgtctgggat gctttctgtg ccaatcggag ggctgatcgg gtaccgattt
      361 ctttcaaggt gctcccaggt gaccatgagt atcccaaatg tagacccaag agaacttcgt
      421 atgaatggta cattcccaaa gggatcttga agacaggctg gatgaataaa catctgaatc
      481 tggtgccagc cctggtggtt gtgttctacg aactagactg ggatgagccc cagtggaaag
      541 aaaagcagtc tgagtgcgcg accagagtgg aaatagttag gcagagttta caagggagaa
      601 acacaaaagt tgcagtggtt ctgattcaga agaaaacccc tttgccccca ggagaagatg
      661 tcattgcttc agaaagagct gcagccttgt gcaatgcgtg tgaactctcg gggaagtctt
      721 tgtttgtact gccccataca gaccaccttg tgggctatat tataagatta gaaaacgcct
      781 tttatgaaca tgcacagact tattactaca ctgagattag aagagtgaaa tctcataaag
      841 aatttttgaa taaaacaaca caccagcttt tatttgttag acatcagttc aaaatagctt
      901 tcttcagtga gttgaaacaa gatacacaaa atgctctgaa gaattacagg accgcctata
      961 atcttgtaca tgaattgaga gcccatgaaa ctaatattct ggaaattaag accatggcag
     1021 gatttataaa ctacaagatc tgtaggctgt gttttcagca caacacccca ctggacgcaa
     1081 ttgctcagtt ccgaaagcac atcgacttgt gtaagaaaaa aatcggaagt gcagagttgt
     1141 cttttgagca cgctgcatgg atgtctaaac aattccaggc ctttggagat ttatttgatg
     1201 aagctatcaa gttggggttg acagctattc aaactcagaa tcctggtttc tattaccagc
     1261 aggcagcata ctatgcccag gagcggaaac agcttacgaa aaccctctgt aaccatgaag
     1321 cttctgtagc gcaccccagt cctgatcccc tagaaacaca gacaggagtt cttgacttct
     1381 acggacagcg accgtggcga caaggaatcc taagttttga tctttctgat cctgaaaagg
     1441 agaaggtggg gattcttgcc attcagctga aggagagaag tgttgttcac tctgaaataa
     1501 taataactct tctgagcaat gctgttgcac agtttaagaa gtataagtgt ccaagaatga
     1561 aaagtcatct gatggttcaa atgggagagg aatattatta tgcaaaggat tataccaaag
     1621 ctttgaggtt gctggattat gtgatgtgtg attatcggag tgaaggatgg tggaccctgc
     1681 tcacgtctat actgaccaca gctctgaagt gttcctacct catggcccaa ctgaaagatt
     1741 acatcactta ttccctagaa cttcttggaa gagcttcaac tctgaaagat gaccagaaat
     1801 ctcggataga aaagaacctc ataaacgttt taatgaatga aagtcctgct cctgaacctg
     1861 actgtgacat attagctgtg aaaactgctc agaagctgtg ggcggaccga atttctctgg
     1921 ccggcagcaa tcttttcaca ataggcgtac aggactttgt gccatttgtg caatgcaaag
     1981 ccaagttcca cgccccaagt tttcatgtcg acgttcccgt gcagttcgat atttatctga
     2041 aggctgactg cccacatccc attaggtttt ctaagctctg tgtcagcttt aataatcagg
     2101 aatacaacca gttctgtgta atcgaagaag catccaagac gagtgacgtt ttagaaaatt
     2161 tgactcaggg aaagatgtgc ttagttcctg gtaaaacaag aaagttttta tttaaatttg
     2221 tggcaaaaac tgaagatgtg ggaaagaaaa ttgagatcac atccttggat ctggttctgg
     2281 gcagcgaggc aggaagatgc gtgatcttga attggcaggg gggaggagga gatgccgctt
     2341 ccacccagga agccttacag gctgcccgtt ctttcaaaag aaggcccagg ctccccgaca
     2401 gcgagcttca ctgggacagc atagtgatcc aggcgagcac catgatcatt tccagagttc
     2461 caaacatttc tgtccatctg cgacatgacc ctcctgccct gactaacgaa atgtactgtt
     2521 tggttgtgac tgtgcaatcc catgagaaga cctgcatcag agacgtgaag ctcactgctg
     2581 gtttaaaacc cggacaggat gccaacttaa ctcagaaaac tcatgtgact cttcatggaa
     2641 cagaaccgtg tgatgagtcc tacccggctc tactcacgga cattcctgtc ggagacctac
     2701 atcccgggga gcagctggaa aaaatgttat atgttcgctg tggaacagtg ggctcaagaa
     2761 tgtttcttgt gtatgtttct tacctgatca atacaactat tgaagaaaaa gaaattgttt
     2821 gcaagtgtca caaggatgaa actgtaacaa tagaaaccgt ctttccattt gacgttgcag
     2881 ttaaatttgt ttctacaaag tttgagcacc tagaaagggt ttatgccgac atccccttcc
     2941 tgctgatgac ggacctgttg agtgcctcgc cctgggccct caccatcgtc tccagtgagc
     3001 tgcagcttgc tccttccatg acgcccgtgg accagctgga gtcccaggtg gacaacgttg
     3061 tcttacggac ttcagagagt gccagtgaat gcttttgtct tcgttgccca tctgttggaa
     3121 atgttgaagg tggagtagca actgggcatt atattatctc ctggaagagg acttcagcca
     3181 tggacgacat ccctgtcatc agcacggtca tcactctgcc acacgtgatt gtagaaaata
     3241 tccctctcca tgtgaacgca gatctgccat cattcgggcg tgttagagag tcgttaccag
     3301 tcaagtatca cctccagaat aagactgact tagttcaaga tgtggagatt tctgtggagc
     3361 ccagtgatgc cttcatgttc tcaggtctta aacagattcg attacgtatc ctccctggca
     3421 ccgaacagga aatgttgtat aatttctacc ctctgatggc cgggtatcag cagctgccat
     3481 ctctcaacgt caacttgctc aggttcccca acttcacaaa tcaactgctc aggcgtttta
     3541 tacccaccag tatttttgta aagccccagg gcagactcat ggacgacgcc tccactgctg
     3601 ccgcgtgatg ttcaggacgg gccttggctg ttcctacgga gacgccagac ggaagtgtct
     3661 gcgttttccg tggtgaaccg tagcttgatc gtggtgcaag ttaatctttg ctgattatta
     3721 atggatgtta tagcaactct tcagaggaac tcatgcttaa aatattagga aaatccatcc
     3781 tcttttatag ttttcactaa taaatatttg aaatctgtca gtgtgacgtg aaaggatgtc
     3841 agtcctttgt tactgttgaa agtcatttta tggatagtaa cgtcttttcg aagtaaggga
     3901 tttgcacttg cagtggccga ggaaagataa gcatctgaaa tatgactgga caaggggaac
     3961 acgtgccagt gtctgcccca ggaaagttct gaatccccag gtgtctcttt cagagttggc
     4021 taaaccggag gtaaatccat cctcataaat ctagtgtgtg ctcagaatac atacacagga
     4081 accggaaagt agtcacgtga ctgatgcaga aaacttccag aaagttttaa tcagagcaat
     4141 ttaagatgtc taaaaaatat ctttgcttac catcaaaaca tgtcaaatag gttcagcttg
     4201 cagccaaaac acggatcatt tatgaagcag gtttgtattt ataagtatgt taacaagatc
     4261 cttacccatc agtatctgaa ctgcaagatt ctgattctaa gcataattcc ctaaactaaa
     4321 agtttttgag aaaggtgcaa tgtctaaata agagatttta gttatgttgt gcgatttgaa
     4381 aagaactatt taaaacttct gaaaattcat gtaaataaaa atcatattgt gaaaatcctc
     4441 tttgttaaaa tatcttaatt taaaactacc ccatttccca gagattttta ttgtttaaaa
     4501 gtctaggagt ttcaaaaagg aaaaggatca tgggaataaa tatgttctct ttcaga
//
LOCUS       XM_032618310            4682 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus trafficking protein particle complex 11
            (TRAPPC11), transcript variant X4, mRNA.
ACCESSION   XM_032618310
VERSION     XM_032618310.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4682
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4682
                     /gene="TRAPPC11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 20 long SRA reads, 13
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746709"
     CDS             333..3734
                     /gene="TRAPPC11"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11
                     isoform X3"
                     /protein_id="XP_032474201.1"
                     /db_xref="GeneID:116746709"
                     /translation="MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
                     RADRVPISFKVLPGDHEYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
                     LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAA
                     LCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
                     HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINY
                     KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAI
                     KLGLTAIQTQNPGFYYQQAAYYAQERKQLTKTLCNHEASVAHPSPDPLETQTGVLDFY
                     GQRPWRQGILSFDLSDPEKEKVGILAIQLKERSVVHSEIIITLLSNAVAQFKKYKCPR
                     MKSHLMVQMGEEYYYAKDYTKALRLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQ
                     LKDYITYSLELLGRASTLKDDQKSRIEKNLINVLMNESPAPEPDCDILAVKTAQKLWA
                     DRISLAGSNLFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDIYLKADCPHPIRFSKL
                     CVSFNNQEYNQFCVIEEASKTSDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKI
                     EITSLDLVLGSEAGRCVILNWQGGGGDAASTQEALQAARSFKRRPRLPDSELHWDSIV
                     IQASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQSHEKTCIRDVKLTAGLKPGQD
                     ANLTQKTHVTLHGTEPCDESYPALLTDIPVGDLHPGEQLEKMLYVRCGTVGSRMFLVY
                     VSYLINTTIEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLM
                     TDLLSASPWALTIVSSELQLAPSMTPVDQLESQVDNVVLRTSESASECFCLRCPSVGN
                     VEGGVATGHYIISWKRTSAMDDIPVISTVITLPHVIVENIPLHVNADLPSFGRVRESL
                     PVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQ
                     QLPSLNVNLLRFPNFTNQLLRRFIPTSIFVKPQGRLMDDASTAAA"
     misc_feature    1119..1895
                     /gene="TRAPPC11"
                     /note="Foie gras liver health family 1; Region:
                     Foie-gras_1; pfam11817"
                     /db_xref="CDD:463359"
     misc_feature    3438..3617
                     /gene="TRAPPC11"
                     /note="Gryzun, putative Golgi trafficking; Region:
                     Gryzun-like; pfam12742"
                     /db_xref="CDD:403829"
ORIGIN      
        1 gtgcctgcgc ggatgggccc tgggaagtct cgcttgtggg caccggaaca ggggcggtgg
       61 tggtagggac ggcccccggc gttttgtgac acccacaccc ccccccgcct gcttcccctg
      121 gttctccccc ggctggcggc gaccggccac agctgcagcg ggctcggggc gtgcggcctg
      181 ggagatctgg aaatttctcc tataggctgt catcgagatc catacaacct ctgcacttgt
      241 cctttgctga tattcttccc attttttgcc accgaatagg cacaaccatt tcaaatgcca
      301 acgcttttaa gaattttcct gacaccttga ccatgagccc cacacaatgg gacttccctg
      361 tggaattatg ttgtcggcct atggcttttg ttactctcac aggcctggat gtggtttata
      421 atgctgtcca tcgagctgtc tgggatgctt tctgtgccaa tcggagggct gatcgggtac
      481 cgatttcttt caaggtgctc ccaggtgacc atgagtatcc caaatgtaga cccaagagaa
      541 cttcgtatga atggtacatt cccaaaggga tcttgaagac aggctggatg aataaacatc
      601 tgaatctggt gccagccctg gtggttgtgt tctacgaact agactgggat gagccccagt
      661 ggaaagaaaa gcagtctgag tgcgcgacca gagtggaaat agttaggcag agtttacaag
      721 ggagaaacac aaaagttgca gtggttctga ttcagaagaa aacccctttg cccccaggag
      781 aagatgtcat tgcttcagaa agagctgcag ccttgtgcaa tgcgtgtgaa ctctcgggga
      841 agtctttgtt tgtactgccc catacagacc accttgtggg ctatattata agattagaaa
      901 acgcctttta tgaacatgca cagacttatt actacactga gattagaaga gtgaaatctc
      961 ataaagaatt tttgaataaa acaacacacc agcttttatt tgttagacat cagttcaaaa
     1021 tagctttctt cagtgagttg aaacaagata cacaaaatgc tctgaagaat tacaggaccg
     1081 cctataatct tgtacatgaa ttgagagccc atgaaactaa tattctggaa attaagacca
     1141 tggcaggatt tataaactac aagatctgta ggctgtgttt tcagcacaac accccactgg
     1201 acgcaattgc tcagttccga aagcacatcg acttgtgtaa gaaaaaaatc ggaagtgcag
     1261 agttgtcttt tgagcacgct gcatggatgt ctaaacaatt ccaggccttt ggagatttat
     1321 ttgatgaagc tatcaagttg gggttgacag ctattcaaac tcagaatcct ggtttctatt
     1381 accagcaggc agcatactat gcccaggagc ggaaacagct tacgaaaacc ctctgtaacc
     1441 atgaagcttc tgtagcgcac cccagtcctg atcccctaga aacacagaca ggagttcttg
     1501 acttctacgg acagcgaccg tggcgacaag gaatcctaag ttttgatctt tctgatcctg
     1561 aaaaggagaa ggtggggatt cttgccattc agctgaagga gagaagtgtt gttcactctg
     1621 aaataataat aactcttctg agcaatgctg ttgcacagtt taagaagtat aagtgtccaa
     1681 gaatgaaaag tcatctgatg gttcaaatgg gagaggaata ttattatgca aaggattata
     1741 ccaaagcttt gaggttgctg gattatgtga tgtgtgatta tcggagtgaa ggatggtgga
     1801 ccctgctcac gtctatactg accacagctc tgaagtgttc ctacctcatg gcccaactga
     1861 aagattacat cacttattcc ctagaacttc ttggaagagc ttcaactctg aaagatgacc
     1921 agaaatctcg gatagaaaag aacctcataa acgttttaat gaatgaaagt cctgctcctg
     1981 aacctgactg tgacatatta gctgtgaaaa ctgctcagaa gctgtgggcg gaccgaattt
     2041 ctctggccgg cagcaatctt ttcacaatag gcgtacagga ctttgtgcca tttgtgcaat
     2101 gcaaagccaa gttccacgcc ccaagttttc atgtcgacgt tcccgtgcag ttcgatattt
     2161 atctgaaggc tgactgccca catcccatta ggttttctaa gctctgtgtc agctttaata
     2221 atcaggaata caaccagttc tgtgtaatcg aagaagcatc caagacgagt gacgttttag
     2281 aaaatttgac tcagggaaag atgtgcttag ttcctggtaa aacaagaaag tttttattta
     2341 aatttgtggc aaaaactgaa gatgtgggaa agaaaattga gatcacatcc ttggatctgg
     2401 ttctgggcag cgaggcagga agatgcgtga tcttgaattg gcagggggga ggaggagatg
     2461 ccgcttccac ccaggaagcc ttacaggctg cccgttcttt caaaagaagg cccaggctcc
     2521 ccgacagcga gcttcactgg gacagcatag tgatccaggc gagcaccatg atcatttcca
     2581 gagttccaaa catttctgtc catctgcgac atgaccctcc tgccctgact aacgaaatgt
     2641 actgtttggt tgtgactgtg caatcccatg agaagacctg catcagagac gtgaagctca
     2701 ctgctggttt aaaacccgga caggatgcca acttaactca gaaaactcat gtgactcttc
     2761 atggaacaga accgtgtgat gagtcctacc cggctctact cacggacatt cctgtcggag
     2821 acctacatcc cggggagcag ctggaaaaaa tgttatatgt tcgctgtgga acagtgggct
     2881 caagaatgtt tcttgtgtat gtttcttacc tgatcaatac aactattgaa gaaaaagaaa
     2941 ttgtttgcaa gtgtcacaag gatgaaactg taacaataga aaccgtcttt ccatttgacg
     3001 ttgcagttaa atttgtttct acaaagtttg agcacctaga aagggtttat gccgacatcc
     3061 ccttcctgct gatgacggac ctgttgagtg cctcgccctg ggccctcacc atcgtctcca
     3121 gtgagctgca gcttgctcct tccatgacgc ccgtggacca gctggagtcc caggtggaca
     3181 acgttgtctt acggacttca gagagtgcca gtgaatgctt ttgtcttcgt tgcccatctg
     3241 ttggaaatgt tgaaggtgga gtagcaactg ggcattatat tatctcctgg aagaggactt
     3301 cagccatgga cgacatccct gtcatcagca cggtcatcac tctgccacac gtgattgtag
     3361 aaaatatccc tctccatgtg aacgcagatc tgccatcatt cgggcgtgtt agagagtcgt
     3421 taccagtcaa gtatcacctc cagaataaga ctgacttagt tcaagatgtg gagatttctg
     3481 tggagcccag tgatgccttc atgttctcag gtcttaaaca gattcgatta cgtatcctcc
     3541 ctggcaccga acaggaaatg ttgtataatt tctaccctct gatggccggg tatcagcagc
     3601 tgccatctct caacgtcaac ttgctcaggt tccccaactt cacaaatcaa ctgctcaggc
     3661 gttttatacc caccagtatt tttgtaaagc cccagggcag actcatggac gacgcctcca
     3721 ctgctgccgc gtgatgttca ggacgggcct tggctgttcc tacggagacg ccagacggaa
     3781 gtgtctgcgt tttccgtggt gaaccgtagc ttgatcgtgg tgcaagttaa tctttgctga
     3841 ttattaatgg atgttatagc aactcttcag aggaactcat gcttaaaata ttaggaaaat
     3901 ccatcctctt ttatagtttt cactaataaa tatttgaaat ctgtcagtgt gacgtgaaag
     3961 gatgtcagtc ctttgttact gttgaaagtc attttatgga tagtaacgtc ttttcgaagt
     4021 aagggatttg cacttgcagt ggccgaggaa agataagcat ctgaaatatg actggacaag
     4081 gggaacacgt gccagtgtct gccccaggaa agttctgaat ccccaggtgt ctctttcaga
     4141 gttggctaaa ccggaggtaa atccatcctc ataaatctag tgtgtgctca gaatacatac
     4201 acaggaaccg gaaagtagtc acgtgactga tgcagaaaac ttccagaaag ttttaatcag
     4261 agcaatttaa gatgtctaaa aaatatcttt gcttaccatc aaaacatgtc aaataggttc
     4321 agcttgcagc caaaacacgg atcatttatg aagcaggttt gtatttataa gtatgttaac
     4381 aagatcctta cccatcagta tctgaactgc aagattctga ttctaagcat aattccctaa
     4441 actaaaagtt tttgagaaag gtgcaatgtc taaataagag attttagtta tgttgtgcga
     4501 tttgaaaaga actatttaaa acttctgaaa attcatgtaa ataaaaatca tattgtgaaa
     4561 atcctctttg ttaaaatatc ttaatttaaa actaccccat ttcccagaga tttttattgt
     4621 ttaaaagtct aggagtttca aaaaggaaaa ggatcatggg aataaatatg ttctctttca
     4681 ga
//
LOCUS       XM_032618311            6759 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus trafficking protein particle complex 11
            (TRAPPC11), transcript variant X5, mRNA.
ACCESSION   XM_032618311
VERSION     XM_032618311.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6759
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6759
                     /gene="TRAPPC11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 5
                     Proteins, and 84% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746709"
     CDS             2332..5811
                     /gene="TRAPPC11"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11
                     isoform X4"
                     /protein_id="XP_032474202.1"
                     /db_xref="GeneID:116746709"
                     /translation="MWMWAFKKLIINVLTFVFQNFPDTLTMSPTQWDFPVELCCRPMA
                     FVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRPKRTSYEWYI
                     PKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTK
                     VAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDHLVGYIIRLENAF
                     YEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTA
                     YNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGS
                     AELSFEHAAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQLTKT
                     LCNHEASVAHPSPDPLETQTGVLDFYGQRPWRQGILSFDLSDPEKEKVGILAIQLKER
                     SVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALRLLDYVMCD
                     YRSEGWWTLLTSILTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN
                     VLMNESPAPEPDCDILAVKTAQKLWADRISLAGSNLFTIGVQDFVPFVQCKAKFHAPS
                     FHVDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKTSDVLENLTQGK
                     MCLVPGKTRKFLFKFVAKTEDVGKKIEITSLDLVLGSEAGRCVILNWQGGGGDAASTQ
                     EALQAARSFKRRPRLPDSELHWDSIVIQASTMIISRVPNISVHLRHDPPALTNEMYCL
                     VVTVQSHEKTCIRDVKLTAGLKPGQDANLTQKTHVTLHGTEPCDESYPALLTDIPVGD
                     LHPGEQLEKMLYVRCGTVGSRMFLVYVSYLINTTIEEKEIVCKCHKDETVTIETVFPF
                     DVAVKFVSTKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTPVDQLES
                     QVDNVVLRTSESASECFCLRCPSVGNVEGGVATGHYIISWKRTSAMDDIPVISTVITL
                     PHVIVENIPLHVNADLPSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLK
                     QIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNVNLLRFPNFTNQLLRRFIPTSIFVKP
                     QGRLMDDASTAAA"
     misc_feature    3196..3972
                     /gene="TRAPPC11"
                     /note="Foie gras liver health family 1; Region:
                     Foie-gras_1; pfam11817"
                     /db_xref="CDD:463359"
     misc_feature    5515..5694
                     /gene="TRAPPC11"
                     /note="Gryzun, putative Golgi trafficking; Region:
                     Gryzun-like; pfam12742"
                     /db_xref="CDD:403829"
ORIGIN      
        1 gtgcctgcgc ggatgggccc tgggaagtct cgcttgtggg caccggaaca ggggcggtgg
       61 tggtagggac ggcccccggc gttttgtgac acccacaccc ccccccgcct gcttcccctg
      121 gttctccccc ggctggcggc gaccggccac agctgcagcg ggctcggggc gtgcggcctg
      181 ggtgagtccg ggtcgggaga ccagtggggc cgggcgagac cgccgaggga gattgctagc
      241 gcttaacgat gctggtttgg gggggcctgt gatttcgtac agcatcagcg agtgcatttc
      301 tcttttagct tctaaagaaa agacacacct atttctaggg cctccaggtt taaggggggg
      361 taggggagga gaggaggaag atagcgtctg cctttagagc tgcagcgttt cttcattgga
      421 gctaccggag caggattctg cgaccctggg gcggtcacct ttctttgcag tccgtcattc
      481 tttctaagag tcttccttat aattttatga ccacgccagc ttccagatga cttccattgc
      541 actacacgat ctcccatcca gagtgttcgc ttcctacttc tgcacctcct tccaggtcat
      601 ggtttggtta gttgcttcat tggttttttt ccaggagatc tggaaatttc tcctataggc
      661 tgtcatcgag atccatacaa cctctgcact tgtcctttgc tgatattctt cccatttttt
      721 gccaccgaat aggcacaacc atttcaaatg ccaacgcttt taaggtacag tgtggcaaga
      781 atttctgata cagttttcgt acagttattt tgggacagag ttaccgtaat ttagagctgc
      841 actgtctggt atagtagcca gtcaccatag gtagctattg agcgtttgaa ataggctaga
      901 tgcgctccga gtgtacaata cacaccagac tttggagaca tagtattaaa aaacgtaaaa
      961 catctcacta ataactttta tagtaatgtt gaattggtaa tattttggac atattggtta
     1021 agtagaatat tattaaaatg aatttcatcc ctttctttac ttttttaatg tgactactag
     1081 aaaattttaa attatttatg tagtttgtat tatatttctc ttggacagga ttgtgatttt
     1141 aagtgattta aacgtaattt ctgtttcccc ttatttccac tccatattca aaggacacag
     1201 cgaattctct tgagcctctg gggttattaa aggaagtgag tatttagggc tctaatctag
     1261 actctttggg atcaagcagt ggtacctaaa ttgtgttttg accatctctt ttttattttc
     1321 accccaaatt cactagaact agaatctgtt tctgaacatg cagtcctctg ctctcgtacc
     1381 ttaatcctgt cctcagaata tctgtttaag catttctaaa acttaggtct attgtggaca
     1441 tttgtcattt ctgatagact ttccaaacca attatctagt acccatcgtt ccgtcagtac
     1501 ttaagtgtga gaagcctaat agtctttact aaattaactt ttcagttaaa aatactgttt
     1561 tgctgatcaa gtggtggcct aagtgctcct aacttctcac agaagttgta tttgagtcct
     1621 gtatgatata ctggtggaga tcacctttta aaccaaccat gtgatacatg tttttgaaaa
     1681 tgagaaatta ttcttaaaat ataattttgt tcgcaataaa cacttttata taattgcttt
     1741 tcaaaacgta gtgcatcttg gattgatata gaccgcttct cagctaaagg gcgcagtaga
     1801 aacatgtcct cttagaggtt tccattcatt attagctttt cccttgtaga ttttccttta
     1861 agtagtacat ttgtattaat tgtggagaaa tgagaaaaca tagctactta gataattagc
     1921 atattatttt aatgctatct caggaaatca gaaattagat gttagcaatt acagagaaat
     1981 tagagatagt tgcactttat tgtatatgta aatcaatcgt tgtttttctt tataactgaa
     2041 atcagaagtt tgatcaccct cctgctttcc tggtctgttt atcccaaagt tttgtgtggt
     2101 tttgagatgt tactggaaat agtgatttgt cttaaagttg actgcaaccc ttgtatatga
     2161 aagatttttt aaaatattat accaatagtt aataaatttt aataggtcca attcaagaat
     2221 taaagtttgc ccgtttgctc tcttcttttg gatttgctcg acagtttgta gacactcaaa
     2281 gactttcgcc tttttgtaat gtttttcaaa tggtggaggt tcatatgtta gatgtggatg
     2341 tgggctttta agaaattaat tattaacgta ttaacatttg tatttcagaa ttttcctgac
     2401 accttgacca tgagccccac acaatgggac ttccctgtgg aattatgttg tcggcctatg
     2461 gcttttgtta ctctcacagg cctggatgtg gtttataatg ctgtccatcg agctgtctgg
     2521 gatgctttct gtgccaatcg gagggctgat cgggtaccga tttctttcaa ggtgctccca
     2581 ggtgaccatg agtatcccaa atgtagaccc aagagaactt cgtatgaatg gtacattccc
     2641 aaagggatct tgaagacagg ctggatgaat aaacatctga atctggtgcc agccctggtg
     2701 gttgtgttct acgaactaga ctgggatgag ccccagtgga aagaaaagca gtctgagtgc
     2761 gcgaccagag tggaaatagt taggcagagt ttacaaggga gaaacacaaa agttgcagtg
     2821 gttctgattc agaagaaaac ccctttgccc ccaggagaag atgtcattgc ttcagaaaga
     2881 gctgcagcct tgtgcaatgc gtgtgaactc tcggggaagt ctttgtttgt actgccccat
     2941 acagaccacc ttgtgggcta tattataaga ttagaaaacg ccttttatga acatgcacag
     3001 acttattact acactgagat tagaagagtg aaatctcata aagaattttt gaataaaaca
     3061 acacaccagc ttttatttgt tagacatcag ttcaaaatag ctttcttcag tgagttgaaa
     3121 caagatacac aaaatgctct gaagaattac aggaccgcct ataatcttgt acatgaattg
     3181 agagcccatg aaactaatat tctggaaatt aagaccatgg caggatttat aaactacaag
     3241 atctgtaggc tgtgttttca gcacaacacc ccactggacg caattgctca gttccgaaag
     3301 cacatcgact tgtgtaagaa aaaaatcgga agtgcagagt tgtcttttga gcacgctgca
     3361 tggatgtcta aacaattcca ggcctttgga gatttatttg atgaagctat caagttgggg
     3421 ttgacagcta ttcaaactca gaatcctggt ttctattacc agcaggcagc atactatgcc
     3481 caggagcgga aacagcttac gaaaaccctc tgtaaccatg aagcttctgt agcgcacccc
     3541 agtcctgatc ccctagaaac acagacagga gttcttgact tctacggaca gcgaccgtgg
     3601 cgacaaggaa tcctaagttt tgatctttct gatcctgaaa aggagaaggt ggggattctt
     3661 gccattcagc tgaaggagag aagtgttgtt cactctgaaa taataataac tcttctgagc
     3721 aatgctgttg cacagtttaa gaagtataag tgtccaagaa tgaaaagtca tctgatggtt
     3781 caaatgggag aggaatatta ttatgcaaag gattatacca aagctttgag gttgctggat
     3841 tatgtgatgt gtgattatcg gagtgaagga tggtggaccc tgctcacgtc tatactgacc
     3901 acagctctga agtgttccta cctcatggcc caactgaaag attacatcac ttattcccta
     3961 gaacttcttg gaagagcttc aactctgaaa gatgaccaga aatctcggat agaaaagaac
     4021 ctcataaacg ttttaatgaa tgaaagtcct gctcctgaac ctgactgtga catattagct
     4081 gtgaaaactg ctcagaagct gtgggcggac cgaatttctc tggccggcag caatcttttc
     4141 acaataggcg tacaggactt tgtgccattt gtgcaatgca aagccaagtt ccacgcccca
     4201 agttttcatg tcgacgttcc cgtgcagttc gatatttatc tgaaggctga ctgcccacat
     4261 cccattaggt tttctaagct ctgtgtcagc tttaataatc aggaatacaa ccagttctgt
     4321 gtaatcgaag aagcatccaa gacgagtgac gttttagaaa atttgactca gggaaagatg
     4381 tgcttagttc ctggtaaaac aagaaagttt ttatttaaat ttgtggcaaa aactgaagat
     4441 gtgggaaaga aaattgagat cacatccttg gatctggttc tgggcagcga ggcaggaaga
     4501 tgcgtgatct tgaattggca ggggggagga ggagatgccg cttccaccca ggaagcctta
     4561 caggctgccc gttctttcaa aagaaggccc aggctccccg acagcgagct tcactgggac
     4621 agcatagtga tccaggcgag caccatgatc atttccagag ttccaaacat ttctgtccat
     4681 ctgcgacatg accctcctgc cctgactaac gaaatgtact gtttggttgt gactgtgcaa
     4741 tcccatgaga agacctgcat cagagacgtg aagctcactg ctggtttaaa acccggacag
     4801 gatgccaact taactcagaa aactcatgtg actcttcatg gaacagaacc gtgtgatgag
     4861 tcctacccgg ctctactcac ggacattcct gtcggagacc tacatcccgg ggagcagctg
     4921 gaaaaaatgt tatatgttcg ctgtggaaca gtgggctcaa gaatgtttct tgtgtatgtt
     4981 tcttacctga tcaatacaac tattgaagaa aaagaaattg tttgcaagtg tcacaaggat
     5041 gaaactgtaa caatagaaac cgtctttcca tttgacgttg cagttaaatt tgtttctaca
     5101 aagtttgagc acctagaaag ggtttatgcc gacatcccct tcctgctgat gacggacctg
     5161 ttgagtgcct cgccctgggc cctcaccatc gtctccagtg agctgcagct tgctccttcc
     5221 atgacgcccg tggaccagct ggagtcccag gtggacaacg ttgtcttacg gacttcagag
     5281 agtgccagtg aatgcttttg tcttcgttgc ccatctgttg gaaatgttga aggtggagta
     5341 gcaactgggc attatattat ctcctggaag aggacttcag ccatggacga catccctgtc
     5401 atcagcacgg tcatcactct gccacacgtg attgtagaaa atatccctct ccatgtgaac
     5461 gcagatctgc catcattcgg gcgtgttaga gagtcgttac cagtcaagta tcacctccag
     5521 aataagactg acttagttca agatgtggag atttctgtgg agcccagtga tgccttcatg
     5581 ttctcaggtc ttaaacagat tcgattacgt atcctccctg gcaccgaaca ggaaatgttg
     5641 tataatttct accctctgat ggccgggtat cagcagctgc catctctcaa cgtcaacttg
     5701 ctcaggttcc ccaacttcac aaatcaactg ctcaggcgtt ttatacccac cagtattttt
     5761 gtaaagcccc agggcagact catggacgac gcctccactg ctgccgcgtg atgttcagga
     5821 cgggccttgg ctgttcctac ggagacgcca gacggaagtg tctgcgtttt ccgtggtgaa
     5881 ccgtagcttg atcgtggtgc aagttaatct ttgctgatta ttaatggatg ttatagcaac
     5941 tcttcagagg aactcatgct taaaatatta ggaaaatcca tcctctttta tagttttcac
     6001 taataaatat ttgaaatctg tcagtgtgac gtgaaaggat gtcagtcctt tgttactgtt
     6061 gaaagtcatt ttatggatag taacgtcttt tcgaagtaag ggatttgcac ttgcagtggc
     6121 cgaggaaaga taagcatctg aaatatgact ggacaagggg aacacgtgcc agtgtctgcc
     6181 ccaggaaagt tctgaatccc caggtgtctc tttcagagtt ggctaaaccg gaggtaaatc
     6241 catcctcata aatctagtgt gtgctcagaa tacatacaca ggaaccggaa agtagtcacg
     6301 tgactgatgc agaaaacttc cagaaagttt taatcagagc aatttaagat gtctaaaaaa
     6361 tatctttgct taccatcaaa acatgtcaaa taggttcagc ttgcagccaa aacacggatc
     6421 atttatgaag caggtttgta tttataagta tgttaacaag atccttaccc atcagtatct
     6481 gaactgcaag attctgattc taagcataat tccctaaact aaaagttttt gagaaaggtg
     6541 caatgtctaa ataagagatt ttagttatgt tgtgcgattt gaaaagaact atttaaaact
     6601 tctgaaaatt catgtaaata aaaatcatat tgtgaaaatc ctctttgtta aaatatctta
     6661 atttaaaact accccatttc ccagagattt ttattgttta aaagtctagg agtttcaaaa
     6721 aggaaaagga tcatgggaat aaatatgttc tctttcaga
//
LOCUS       XM_032618312            9339 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus trafficking protein particle complex 11
            (TRAPPC11), transcript variant X6, mRNA.
ACCESSION   XM_032618312
VERSION     XM_032618312.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9339
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9339
                     /gene="TRAPPC11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 2 Proteins, and
                     89% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746709"
     CDS             246..3677
                     /gene="TRAPPC11"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11
                     isoform X1"
                     /protein_id="XP_032474203.1"
                     /db_xref="GeneID:116746709"
                     /translation="MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
                     RADRVPISFKVLPGDHEYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
                     LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAA
                     LCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
                     HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINY
                     KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAI
                     KLGLTAIQTQNPGFYYQQAAYYAQERKQLTKTLCNHEASVAHPSPDPLETQTGVLDFY
                     GQRPWRQGILSFDLSDPEKEKVGILAIQLKERSVVHSEIIITLLSNAVAQFKKYKCPR
                     MKSHLMVQMGEEYYYAKDYTKALRLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQ
                     LKDYITYSLELLGRASTLKDDQKSRIEKNLINVLMNESPAPEPDCDILAVKTAQKLWA
                     DRISLAGSNLFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDIYLKADCPHPIRFSKL
                     CVSFNNQEYNQFCVIEEASKTSDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKI
                     EITSLDLVLGSEAGRCVILNWQGGGGDAASTQEALQAARSFKRRPRLPDSELHWDSIV
                     IQASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQSHEKTCIRDVKLTAGLKPGQD
                     ANLTQKTHVTLHGTEPCDESYPALLTDIPVGDLHPGEQLEKMLYVRCGTVGSRMFLVY
                     VSYLINTTIEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLM
                     TDLLSASPWALTIVSSELQLAPSMTPVDQLESQVDNVVLRTSESASECFCLRCPSVGN
                     VEGGVATGHYIISWKRTSAMDDIPVISTVITLPHVIVENIPLHVNADLPSFGRVRESL
                     PVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQ
                     QLPSLNVNLLRFPNFTNQLLRRFIPTSIFVKVRLRHFLLFKFTVLKTNKRRCFFM"
     misc_feature    1032..1808
                     /gene="TRAPPC11"
                     /note="Foie gras liver health family 1; Region:
                     Foie-gras_1; pfam11817"
                     /db_xref="CDD:463359"
     misc_feature    3351..3530
                     /gene="TRAPPC11"
                     /note="Gryzun, putative Golgi trafficking; Region:
                     Gryzun-like; pfam12742"
                     /db_xref="CDD:403829"
ORIGIN      
        1 tgtgcctgcg cggatgggcc ctgggaagtc tcgcttgtgg gcaccggaac aggggcggtg
       61 gtggtaggga cggcccccgg cgttttgtga cacccacacc cccccccgcc tgcttcccct
      121 ggttctcccc cggctggcgg cgaccggcca cagctgcagc gggctcgggg cgtgcggcct
      181 gggacacagc gaattctctt gagcctctgg ggttattaaa ggaaaatttt cctgacacct
      241 tgaccatgag ccccacacaa tgggacttcc ctgtggaatt atgttgtcgg cctatggctt
      301 ttgttactct cacaggcctg gatgtggttt ataatgctgt ccatcgagct gtctgggatg
      361 ctttctgtgc caatcggagg gctgatcggg taccgatttc tttcaaggtg ctcccaggtg
      421 accatgagta tcccaaatgt agacccaaga gaacttcgta tgaatggtac attcccaaag
      481 ggatcttgaa gacaggctgg atgaataaac atctgaatct ggtgccagcc ctggtggttg
      541 tgttctacga actagactgg gatgagcccc agtggaaaga aaagcagtct gagtgcgcga
      601 ccagagtgga aatagttagg cagagtttac aagggagaaa cacaaaagtt gcagtggttc
      661 tgattcagaa gaaaacccct ttgcccccag gagaagatgt cattgcttca gaaagagctg
      721 cagccttgtg caatgcgtgt gaactctcgg ggaagtcttt gtttgtactg ccccatacag
      781 accaccttgt gggctatatt ataagattag aaaacgcctt ttatgaacat gcacagactt
      841 attactacac tgagattaga agagtgaaat ctcataaaga atttttgaat aaaacaacac
      901 accagctttt atttgttaga catcagttca aaatagcttt cttcagtgag ttgaaacaag
      961 atacacaaaa tgctctgaag aattacagga ccgcctataa tcttgtacat gaattgagag
     1021 cccatgaaac taatattctg gaaattaaga ccatggcagg atttataaac tacaagatct
     1081 gtaggctgtg ttttcagcac aacaccccac tggacgcaat tgctcagttc cgaaagcaca
     1141 tcgacttgtg taagaaaaaa atcggaagtg cagagttgtc ttttgagcac gctgcatgga
     1201 tgtctaaaca attccaggcc tttggagatt tatttgatga agctatcaag ttggggttga
     1261 cagctattca aactcagaat cctggtttct attaccagca ggcagcatac tatgcccagg
     1321 agcggaaaca gcttacgaaa accctctgta accatgaagc ttctgtagcg caccccagtc
     1381 ctgatcccct agaaacacag acaggagttc ttgacttcta cggacagcga ccgtggcgac
     1441 aaggaatcct aagttttgat ctttctgatc ctgaaaagga gaaggtgggg attcttgcca
     1501 ttcagctgaa ggagagaagt gttgttcact ctgaaataat aataactctt ctgagcaatg
     1561 ctgttgcaca gtttaagaag tataagtgtc caagaatgaa aagtcatctg atggttcaaa
     1621 tgggagagga atattattat gcaaaggatt ataccaaagc tttgaggttg ctggattatg
     1681 tgatgtgtga ttatcggagt gaaggatggt ggaccctgct cacgtctata ctgaccacag
     1741 ctctgaagtg ttcctacctc atggcccaac tgaaagatta catcacttat tccctagaac
     1801 ttcttggaag agcttcaact ctgaaagatg accagaaatc tcggatagaa aagaacctca
     1861 taaacgtttt aatgaatgaa agtcctgctc ctgaacctga ctgtgacata ttagctgtga
     1921 aaactgctca gaagctgtgg gcggaccgaa tttctctggc cggcagcaat cttttcacaa
     1981 taggcgtaca ggactttgtg ccatttgtgc aatgcaaagc caagttccac gccccaagtt
     2041 ttcatgtcga cgttcccgtg cagttcgata tttatctgaa ggctgactgc ccacatccca
     2101 ttaggttttc taagctctgt gtcagcttta ataatcagga atacaaccag ttctgtgtaa
     2161 tcgaagaagc atccaagacg agtgacgttt tagaaaattt gactcaggga aagatgtgct
     2221 tagttcctgg taaaacaaga aagtttttat ttaaatttgt ggcaaaaact gaagatgtgg
     2281 gaaagaaaat tgagatcaca tccttggatc tggttctggg cagcgaggca ggaagatgcg
     2341 tgatcttgaa ttggcagggg ggaggaggag atgccgcttc cacccaggaa gccttacagg
     2401 ctgcccgttc tttcaaaaga aggcccaggc tccccgacag cgagcttcac tgggacagca
     2461 tagtgatcca ggcgagcacc atgatcattt ccagagttcc aaacatttct gtccatctgc
     2521 gacatgaccc tcctgccctg actaacgaaa tgtactgttt ggttgtgact gtgcaatccc
     2581 atgagaagac ctgcatcaga gacgtgaagc tcactgctgg tttaaaaccc ggacaggatg
     2641 ccaacttaac tcagaaaact catgtgactc ttcatggaac agaaccgtgt gatgagtcct
     2701 acccggctct actcacggac attcctgtcg gagacctaca tcccggggag cagctggaaa
     2761 aaatgttata tgttcgctgt ggaacagtgg gctcaagaat gtttcttgtg tatgtttctt
     2821 acctgatcaa tacaactatt gaagaaaaag aaattgtttg caagtgtcac aaggatgaaa
     2881 ctgtaacaat agaaaccgtc tttccatttg acgttgcagt taaatttgtt tctacaaagt
     2941 ttgagcacct agaaagggtt tatgccgaca tccccttcct gctgatgacg gacctgttga
     3001 gtgcctcgcc ctgggccctc accatcgtct ccagtgagct gcagcttgct ccttccatga
     3061 cgcccgtgga ccagctggag tcccaggtgg acaacgttgt cttacggact tcagagagtg
     3121 ccagtgaatg cttttgtctt cgttgcccat ctgttggaaa tgttgaaggt ggagtagcaa
     3181 ctgggcatta tattatctcc tggaagagga cttcagccat ggacgacatc cctgtcatca
     3241 gcacggtcat cactctgcca cacgtgattg tagaaaatat ccctctccat gtgaacgcag
     3301 atctgccatc attcgggcgt gttagagagt cgttaccagt caagtatcac ctccagaata
     3361 agactgactt agttcaagat gtggagattt ctgtggagcc cagtgatgcc ttcatgttct
     3421 caggtcttaa acagattcga ttacgtatcc tccctggcac cgaacaggaa atgttgtata
     3481 atttctaccc tctgatggcc gggtatcagc agctgccatc tctcaacgtc aacttgctca
     3541 ggttccccaa cttcacaaat caactgctca ggcgttttat acccaccagt atttttgtaa
     3601 aggtgaggct tagacatttt ctgcttttta aattcactgt cttgaaaact aacaaaagaa
     3661 gatgtttttt catgtaaact tcactaagta tttggagact aacaggatag ggctttggct
     3721 gttactgtat aaatttggca atattgctat tcatttctgt aaagttatta ttttatagat
     3781 ttttttttta gatttctatt ttatagatat ttttagatgt aacttcaaag atttttattc
     3841 ccttgggtaa aggtttatct ttctggcatc cttaaacatg gtttttcttt ggcgtttagt
     3901 aaagtatatt tctatttttg tttttctttt ttttatttct ttattttaat attttgttta
     3961 ctttttaaaa atatgtttta aaattgtagt taatttgtaa ctatttttta atcaaaatgg
     4021 attaactttc tgaatacagt ccctgaactt ttctgattct aactatgtaa tactactgga
     4081 tttgggtctt ttctgtaaac gatcaccggt cagaaactat actctggttt aatgttttga
     4141 ttttttaaca gtgatacgat ttccaggttc cttcagtaaa ggaccctgta ggattgtcat
     4201 cgctttgcct cggtttaagc cactcttgat gcctaaatta aggctgtttc tccagatagt
     4261 tctggtttcc cttggtaacc agagatacat gaacatatat gaatcctgtg tgttctcttt
     4321 ttttattgtt gttgttgttg ttgtgttttt ttttaagtaa ttgatagagg atcacgctgg
     4381 gttttttttg ttttgttttg ttttgttttt ttatttttgg ctgcactggg tcttcgccgc
     4441 tgtgtgtggg ctttctctag ttgtggccag cgggggctac tctttgttgc agtgcgcggg
     4501 cttctcattg cagtggcttc tcttgttgtg gagcatgggc tctaggcgtg tgggcttcag
     4561 tagtgtggca tgcgggctca gtagttgtgg ctcgctggct ctagagcgca ggctcagtaa
     4621 ctgtggcgcg tgggcttagt tgctccgcgc acgtgggatc ttcccagacc agggctcaaa
     4681 cccgtgtccc ctgcattggc aggtgggttc ttaaccactg tgccaccagg gaagtccctt
     4741 gtgtgttctc tttttatttt aagttttacc ccctttttgg atgacaagtt acaatttccg
     4801 tttttgtatc tgtcaggctt tggggaagcc ttgtttatat aatctgggat ttggtaaatt
     4861 gtaagttagc ctgtgttcat gtatgtgtca taatcatccc acctgttacc tttctagact
     4921 tacacagttt tgttgtgttt tgcttttgca tctgcaaaaa aaatcatttt tattaaccct
     4981 ctaagcttct attgtatacc aaacttttat ttttttattt ttattttttt aacatcttta
     5041 ttggagtata attattttac aatggtgtgt tagtttctgc tttacaacaa agtgaatcag
     5101 ctatacatat atccacatat cccctccctc ttgcgtctcc ctcccaccct ccctatccca
     5161 cctctctagg tggtcacaaa gcaccgagct gatctccctg tgctatgcgg ctgcttccca
     5221 ctagctatct gttttacatt tggtagtgta tataagtccg tgccactctc tcacttcgtc
     5281 ccagcttacc cttccccctc cccatgtcct caagtccatt ctctacgtct gcgtctttat
     5341 tcctgtcctg cccctaggtt tttcagaacc tttttttttt ttagattcca tatatatgtg
     5401 ttagcatacg gtatttgttt ttctctttct gacttacttc actctgtatg acagtctcta
     5461 ggtccatcca cctcactaca aataactcaa tttcgtttct ttttatggct gagtaatatt
     5521 ccattgtata tatgtgccac atcttcttta tccattcgtc tgttgatgga cacttaggtt
     5581 gcttccatgt cctggctatt gtaaacagag ctgcaatgaa catgtggcac atgactcttt
     5641 ttgaatgatg gttttctcag ggtgtatgcc cagtagtggg attgctgggt cgtatggtag
     5701 ctctattttt agttttttaa ggaacctcca tactgttctc catagtggct gtatcaattt
     5761 acattcccac caagagtgca aaagggttcc cttttatacc atacttttaa attattattt
     5821 tttaaatctc ataattttgg atctcctgtg tttaaacagt ggcctttttg tttttttaag
     5881 actttatttt ttttagagca gtttcaggtt cacagcaaaa ttgagaggaa ggtacagaga
     5941 tttcccatat accgcccgcc tgcacacagc agtggctttt tttaacattt ccacctcatc
     6001 acattctaaa gccatttccc ttactgttcc tcactgtcat gtctgaggtt accctgcagg
     6061 ggagaagtca tgactgggtt ggggagcggc ggtgggatgg gtgctctctg atgtcctttt
     6121 agctgtttga ccctccgaag tttgctcttc ctaaactcag aagtatggct ttcatcagcc
     6181 tgaaagtatt tatcgatgta cagacctgat cgtattctag ccgaacaaac agagcttgtt
     6241 tgagatgtga gagttggtca tgttgaggaa ccagcgtttt gttcccatca attaatctct
     6301 ttcgttcttt tccctgaagt gctcagaaca cccaaactaa tccagataaa tctagttccg
     6361 tcttctgatt ttctttcaca gtaaacctct tctgggtggt ggtgttttaa gtccataagg
     6421 aaaggttcca gaaaagtaaa cattcataag ttttaaccta atcagcacac ccttttctaa
     6481 ctgccacgat cttttctcta aatttaagaa ccatcttcta gtaacttgac tgctgctaaa
     6541 atcattgact gcactattca gagccagctc ctttatcaac tgggaaaact caataattaa
     6601 aattgtttta cctgtcacac taagggcagt gaatgaggat tacccttttt ccacttcatg
     6661 aacaatcacc gactaaaatt ttacatcccg tcatgccttt attaaacttt agacctgtgc
     6721 tattccagtg tggtagccac gagcacatgt gcctattgag attcaaatta attaaaactt
     6781 aatttagggc ttccctggtg gcgcagtggt tgagagtccg cctgccgatg caggggacac
     6841 gggttcgtgc cccggtctgg gaggatccca cgtgccgcgg agcggctggg cccgtgagcc
     6901 atggccgctg agcctgcgcg tccggagcct gtcctccgca acgggagagg ccacaacagt
     6961 gagaggcccg cgtaacgcat aaaaaaaaaa aaaaaaaaaa aaaaaactta atttaaagct
     7021 tagttaccag ttgcactagc cgtatctcag gcgctcagta ggcgtgcagc tagcagcact
     7081 gatgtggagc gtttcctctt cacggagagt cttgttggac agtgccgcct agagcacgct
     7141 tggatccata tttttcttcc ttcgcaaaat agatttgttt tcttattgca tgataagaaa
     7201 acagatttat tgttctctgt ccctgtttgt aaagctgtgt ttgttaagga tttgacctgg
     7261 tggagccatt tattctgttt ctaaaactaa acgtcctcca tgagtcctac aaattacatg
     7321 acgtatgaaa gaccagcaac cttttctttc gttcatccca ttcagatggc tgttgactca
     7381 cacacacatg cacacatgca tacatacgta cataaagctg cccagcaaca gatcagagcg
     7441 ggagcgcccc cttcgctgct ccagggaacc cacaggaatc agctgcttga aacacagcag
     7501 tgggctgtgg tgctgaggtt gcaatgctaa tctagttcat gtcccagaca ccgtctctca
     7561 tgcttttccc acagaggtct gctaacgtac agcagtaaag tagtcatttg caagaatttc
     7621 attcttttag ctactcgatg acgctctggg gtgttgctga cctgtcagaa attttacacc
     7681 taaaaccagt catgatacct tttaatccct cttagttttt cttcttctga tgtgatgttt
     7741 taaatttttt caatcactga acttcgagaa agggaaattt tgtttttatc tgctgcttca
     7801 atccttgcaa tcttcgttgt taataccgta gagttcattg tgaatcactt tttctcaaac
     7861 aggagattgg ggagccttga atcccaaaga gcttgctgtc agctgaggtt tgtggcctgc
     7921 ttaaagcttg ggacacaggc cgagcaaggg agagagagga tagagcgtta ccgcttgagc
     7981 aggaatggtg gccatgttcc ctttcacgcg cggtgcattg atagattggt ggtagctgcc
     8041 agaacaccgg gttaagagaa aagtagtgac gaggtagatt ccgcgggtgg gtgtgatcgg
     8101 ctggtgatgt ctgccactgg gcacagaggg agtgtggcag cacggaggct gtgccgtcac
     8161 catgcccggc tcacgtgaag aaagagggtg gggggaaagg aggaaagcaa cacagtttgt
     8221 ttgggtgctt gcacacgtct attctgttct cgtgaaacag ttccaagaac gtcaaaatct
     8281 cttcaattaa tagcgctact gttgccatta ccattttgta aacccgcttt gttttccact
     8341 cggcagcccc agggcagact catggacgac gcctccactg ctgccgcgtg atgttcagga
     8401 cgggccttgg ctgttcctac ggagacgcca gacggaagtg tctgcgtttt ccgtggtgaa
     8461 ccgtagcttg atcgtggtgc aagttaatct ttgctgatta ttaatggatg ttatagcaac
     8521 tcttcagagg aactcatgct taaaatatta ggaaaatcca tcctctttta tagttttcac
     8581 taataaatat ttgaaatctg tcagtgtgac gtgaaaggat gtcagtcctt tgttactgtt
     8641 gaaagtcatt ttatggatag taacgtcttt tcgaagtaag ggatttgcac ttgcagtggc
     8701 cgaggaaaga taagcatctg aaatatgact ggacaagggg aacacgtgcc agtgtctgcc
     8761 ccaggaaagt tctgaatccc caggtgtctc tttcagagtt ggctaaaccg gaggtaaatc
     8821 catcctcata aatctagtgt gtgctcagaa tacatacaca ggaaccggaa agtagtcacg
     8881 tgactgatgc agaaaacttc cagaaagttt taatcagagc aatttaagat gtctaaaaaa
     8941 tatctttgct taccatcaaa acatgtcaaa taggttcagc ttgcagccaa aacacggatc
     9001 atttatgaag caggtttgta tttataagta tgttaacaag atccttaccc atcagtatct
     9061 gaactgcaag attctgattc taagcataat tccctaaact aaaagttttt gagaaaggtg
     9121 caatgtctaa ataagagatt ttagttatgt tgtgcgattt gaaaagaact atttaaaact
     9181 tctgaaaatt catgtaaata aaaatcatat tgtgaaaatc ctctttgtta aaatatctta
     9241 atttaaaact accccatttc ccagagattt ttattgttta aaagtctagg agtttcaaaa
     9301 aggaaaagga tcatgggaat aaatatgttc tctttcaga
//
LOCUS       XM_032618313            9297 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus trafficking protein particle complex 11
            (TRAPPC11), transcript variant X7, mRNA.
ACCESSION   XM_032618313
VERSION     XM_032618313.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9297
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9297
                     /gene="TRAPPC11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 1 Protein, and
                     89% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746709"
     CDS             204..3635
                     /gene="TRAPPC11"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11
                     isoform X1"
                     /protein_id="XP_032474204.1"
                     /db_xref="GeneID:116746709"
                     /translation="MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
                     RADRVPISFKVLPGDHEYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
                     LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAA
                     LCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
                     HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINY
                     KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAI
                     KLGLTAIQTQNPGFYYQQAAYYAQERKQLTKTLCNHEASVAHPSPDPLETQTGVLDFY
                     GQRPWRQGILSFDLSDPEKEKVGILAIQLKERSVVHSEIIITLLSNAVAQFKKYKCPR
                     MKSHLMVQMGEEYYYAKDYTKALRLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQ
                     LKDYITYSLELLGRASTLKDDQKSRIEKNLINVLMNESPAPEPDCDILAVKTAQKLWA
                     DRISLAGSNLFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDIYLKADCPHPIRFSKL
                     CVSFNNQEYNQFCVIEEASKTSDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKI
                     EITSLDLVLGSEAGRCVILNWQGGGGDAASTQEALQAARSFKRRPRLPDSELHWDSIV
                     IQASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQSHEKTCIRDVKLTAGLKPGQD
                     ANLTQKTHVTLHGTEPCDESYPALLTDIPVGDLHPGEQLEKMLYVRCGTVGSRMFLVY
                     VSYLINTTIEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLM
                     TDLLSASPWALTIVSSELQLAPSMTPVDQLESQVDNVVLRTSESASECFCLRCPSVGN
                     VEGGVATGHYIISWKRTSAMDDIPVISTVITLPHVIVENIPLHVNADLPSFGRVRESL
                     PVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQ
                     QLPSLNVNLLRFPNFTNQLLRRFIPTSIFVKVRLRHFLLFKFTVLKTNKRRCFFM"
     misc_feature    990..1766
                     /gene="TRAPPC11"
                     /note="Foie gras liver health family 1; Region:
                     Foie-gras_1; pfam11817"
                     /db_xref="CDD:463359"
     misc_feature    3309..3488
                     /gene="TRAPPC11"
                     /note="Gryzun, putative Golgi trafficking; Region:
                     Gryzun-like; pfam12742"
                     /db_xref="CDD:403829"
ORIGIN      
        1 tgtgcctgcg cggatgggcc ctgggaagtc tcgcttgtgg gcaccggaac aggggcggtg
       61 gtggtaggga cggcccccgg cgttttgtga cacccacacc cccccccgcc tgcttcccct
      121 ggttctcccc cggctggcgg cgaccggcca cagctgcagc gggctcgggg cgtgcggcct
      181 ggaattttcc tgacaccttg accatgagcc ccacacaatg ggacttccct gtggaattat
      241 gttgtcggcc tatggctttt gttactctca caggcctgga tgtggtttat aatgctgtcc
      301 atcgagctgt ctgggatgct ttctgtgcca atcggagggc tgatcgggta ccgatttctt
      361 tcaaggtgct cccaggtgac catgagtatc ccaaatgtag acccaagaga acttcgtatg
      421 aatggtacat tcccaaaggg atcttgaaga caggctggat gaataaacat ctgaatctgg
      481 tgccagccct ggtggttgtg ttctacgaac tagactggga tgagccccag tggaaagaaa
      541 agcagtctga gtgcgcgacc agagtggaaa tagttaggca gagtttacaa gggagaaaca
      601 caaaagttgc agtggttctg attcagaaga aaaccccttt gcccccagga gaagatgtca
      661 ttgcttcaga aagagctgca gccttgtgca atgcgtgtga actctcgggg aagtctttgt
      721 ttgtactgcc ccatacagac caccttgtgg gctatattat aagattagaa aacgcctttt
      781 atgaacatgc acagacttat tactacactg agattagaag agtgaaatct cataaagaat
      841 ttttgaataa aacaacacac cagcttttat ttgttagaca tcagttcaaa atagctttct
      901 tcagtgagtt gaaacaagat acacaaaatg ctctgaagaa ttacaggacc gcctataatc
      961 ttgtacatga attgagagcc catgaaacta atattctgga aattaagacc atggcaggat
     1021 ttataaacta caagatctgt aggctgtgtt ttcagcacaa caccccactg gacgcaattg
     1081 ctcagttccg aaagcacatc gacttgtgta agaaaaaaat cggaagtgca gagttgtctt
     1141 ttgagcacgc tgcatggatg tctaaacaat tccaggcctt tggagattta tttgatgaag
     1201 ctatcaagtt ggggttgaca gctattcaaa ctcagaatcc tggtttctat taccagcagg
     1261 cagcatacta tgcccaggag cggaaacagc ttacgaaaac cctctgtaac catgaagctt
     1321 ctgtagcgca ccccagtcct gatcccctag aaacacagac aggagttctt gacttctacg
     1381 gacagcgacc gtggcgacaa ggaatcctaa gttttgatct ttctgatcct gaaaaggaga
     1441 aggtggggat tcttgccatt cagctgaagg agagaagtgt tgttcactct gaaataataa
     1501 taactcttct gagcaatgct gttgcacagt ttaagaagta taagtgtcca agaatgaaaa
     1561 gtcatctgat ggttcaaatg ggagaggaat attattatgc aaaggattat accaaagctt
     1621 tgaggttgct ggattatgtg atgtgtgatt atcggagtga aggatggtgg accctgctca
     1681 cgtctatact gaccacagct ctgaagtgtt cctacctcat ggcccaactg aaagattaca
     1741 tcacttattc cctagaactt cttggaagag cttcaactct gaaagatgac cagaaatctc
     1801 ggatagaaaa gaacctcata aacgttttaa tgaatgaaag tcctgctcct gaacctgact
     1861 gtgacatatt agctgtgaaa actgctcaga agctgtgggc ggaccgaatt tctctggccg
     1921 gcagcaatct tttcacaata ggcgtacagg actttgtgcc atttgtgcaa tgcaaagcca
     1981 agttccacgc cccaagtttt catgtcgacg ttcccgtgca gttcgatatt tatctgaagg
     2041 ctgactgccc acatcccatt aggttttcta agctctgtgt cagctttaat aatcaggaat
     2101 acaaccagtt ctgtgtaatc gaagaagcat ccaagacgag tgacgtttta gaaaatttga
     2161 ctcagggaaa gatgtgctta gttcctggta aaacaagaaa gtttttattt aaatttgtgg
     2221 caaaaactga agatgtggga aagaaaattg agatcacatc cttggatctg gttctgggca
     2281 gcgaggcagg aagatgcgtg atcttgaatt ggcagggggg aggaggagat gccgcttcca
     2341 cccaggaagc cttacaggct gcccgttctt tcaaaagaag gcccaggctc cccgacagcg
     2401 agcttcactg ggacagcata gtgatccagg cgagcaccat gatcatttcc agagttccaa
     2461 acatttctgt ccatctgcga catgaccctc ctgccctgac taacgaaatg tactgtttgg
     2521 ttgtgactgt gcaatcccat gagaagacct gcatcagaga cgtgaagctc actgctggtt
     2581 taaaacccgg acaggatgcc aacttaactc agaaaactca tgtgactctt catggaacag
     2641 aaccgtgtga tgagtcctac ccggctctac tcacggacat tcctgtcgga gacctacatc
     2701 ccggggagca gctggaaaaa atgttatatg ttcgctgtgg aacagtgggc tcaagaatgt
     2761 ttcttgtgta tgtttcttac ctgatcaata caactattga agaaaaagaa attgtttgca
     2821 agtgtcacaa ggatgaaact gtaacaatag aaaccgtctt tccatttgac gttgcagtta
     2881 aatttgtttc tacaaagttt gagcacctag aaagggttta tgccgacatc cccttcctgc
     2941 tgatgacgga cctgttgagt gcctcgccct gggccctcac catcgtctcc agtgagctgc
     3001 agcttgctcc ttccatgacg cccgtggacc agctggagtc ccaggtggac aacgttgtct
     3061 tacggacttc agagagtgcc agtgaatgct tttgtcttcg ttgcccatct gttggaaatg
     3121 ttgaaggtgg agtagcaact gggcattata ttatctcctg gaagaggact tcagccatgg
     3181 acgacatccc tgtcatcagc acggtcatca ctctgccaca cgtgattgta gaaaatatcc
     3241 ctctccatgt gaacgcagat ctgccatcat tcgggcgtgt tagagagtcg ttaccagtca
     3301 agtatcacct ccagaataag actgacttag ttcaagatgt ggagatttct gtggagccca
     3361 gtgatgcctt catgttctca ggtcttaaac agattcgatt acgtatcctc cctggcaccg
     3421 aacaggaaat gttgtataat ttctaccctc tgatggccgg gtatcagcag ctgccatctc
     3481 tcaacgtcaa cttgctcagg ttccccaact tcacaaatca actgctcagg cgttttatac
     3541 ccaccagtat ttttgtaaag gtgaggctta gacattttct gctttttaaa ttcactgtct
     3601 tgaaaactaa caaaagaaga tgttttttca tgtaaacttc actaagtatt tggagactaa
     3661 caggataggg ctttggctgt tactgtataa atttggcaat attgctattc atttctgtaa
     3721 agttattatt ttatagattt tttttttaga tttctatttt atagatattt ttagatgtaa
     3781 cttcaaagat ttttattccc ttgggtaaag gtttatcttt ctggcatcct taaacatggt
     3841 ttttctttgg cgtttagtaa agtatatttc tatttttgtt tttctttttt ttatttcttt
     3901 attttaatat tttgtttact ttttaaaaat atgttttaaa attgtagtta atttgtaact
     3961 attttttaat caaaatggat taactttctg aatacagtcc ctgaactttt ctgattctaa
     4021 ctatgtaata ctactggatt tgggtctttt ctgtaaacga tcaccggtca gaaactatac
     4081 tctggtttaa tgttttgatt ttttaacagt gatacgattt ccaggttcct tcagtaaagg
     4141 accctgtagg attgtcatcg ctttgcctcg gtttaagcca ctcttgatgc ctaaattaag
     4201 gctgtttctc cagatagttc tggtttccct tggtaaccag agatacatga acatatatga
     4261 atcctgtgtg ttctcttttt ttattgttgt tgttgttgtt gtgttttttt ttaagtaatt
     4321 gatagaggat cacgctgggt tttttttgtt ttgttttgtt ttgttttttt atttttggct
     4381 gcactgggtc ttcgccgctg tgtgtgggct ttctctagtt gtggccagcg ggggctactc
     4441 tttgttgcag tgcgcgggct tctcattgca gtggcttctc ttgttgtgga gcatgggctc
     4501 taggcgtgtg ggcttcagta gtgtggcatg cgggctcagt agttgtggct cgctggctct
     4561 agagcgcagg ctcagtaact gtggcgcgtg ggcttagttg ctccgcgcac gtgggatctt
     4621 cccagaccag ggctcaaacc cgtgtcccct gcattggcag gtgggttctt aaccactgtg
     4681 ccaccaggga agtcccttgt gtgttctctt tttattttaa gttttacccc ctttttggat
     4741 gacaagttac aatttccgtt tttgtatctg tcaggctttg gggaagcctt gtttatataa
     4801 tctgggattt ggtaaattgt aagttagcct gtgttcatgt atgtgtcata atcatcccac
     4861 ctgttacctt tctagactta cacagttttg ttgtgttttg cttttgcatc tgcaaaaaaa
     4921 atcattttta ttaaccctct aagcttctat tgtataccaa acttttattt ttttattttt
     4981 atttttttaa catctttatt ggagtataat tattttacaa tggtgtgtta gtttctgctt
     5041 tacaacaaag tgaatcagct atacatatat ccacatatcc cctccctctt gcgtctccct
     5101 cccaccctcc ctatcccacc tctctaggtg gtcacaaagc accgagctga tctccctgtg
     5161 ctatgcggct gcttcccact agctatctgt tttacatttg gtagtgtata taagtccgtg
     5221 ccactctctc acttcgtccc agcttaccct tccccctccc catgtcctca agtccattct
     5281 ctacgtctgc gtctttattc ctgtcctgcc cctaggtttt tcagaacctt tttttttttt
     5341 agattccata tatatgtgtt agcatacggt atttgttttt ctctttctga cttacttcac
     5401 tctgtatgac agtctctagg tccatccacc tcactacaaa taactcaatt tcgtttcttt
     5461 ttatggctga gtaatattcc attgtatata tgtgccacat cttctttatc cattcgtctg
     5521 ttgatggaca cttaggttgc ttccatgtcc tggctattgt aaacagagct gcaatgaaca
     5581 tgtggcacat gactcttttt gaatgatggt tttctcaggg tgtatgccca gtagtgggat
     5641 tgctgggtcg tatggtagct ctatttttag ttttttaagg aacctccata ctgttctcca
     5701 tagtggctgt atcaatttac attcccacca agagtgcaaa agggttccct tttataccat
     5761 acttttaaat tattattttt taaatctcat aattttggat ctcctgtgtt taaacagtgg
     5821 cctttttgtt tttttaagac tttatttttt ttagagcagt ttcaggttca cagcaaaatt
     5881 gagaggaagg tacagagatt tcccatatac cgcccgcctg cacacagcag tggctttttt
     5941 taacatttcc acctcatcac attctaaagc catttccctt actgttcctc actgtcatgt
     6001 ctgaggttac cctgcagggg agaagtcatg actgggttgg ggagcggcgg tgggatgggt
     6061 gctctctgat gtccttttag ctgtttgacc ctccgaagtt tgctcttcct aaactcagaa
     6121 gtatggcttt catcagcctg aaagtattta tcgatgtaca gacctgatcg tattctagcc
     6181 gaacaaacag agcttgtttg agatgtgaga gttggtcatg ttgaggaacc agcgttttgt
     6241 tcccatcaat taatctcttt cgttcttttc cctgaagtgc tcagaacacc caaactaatc
     6301 cagataaatc tagttccgtc ttctgatttt ctttcacagt aaacctcttc tgggtggtgg
     6361 tgttttaagt ccataaggaa aggttccaga aaagtaaaca ttcataagtt ttaacctaat
     6421 cagcacaccc ttttctaact gccacgatct tttctctaaa tttaagaacc atcttctagt
     6481 aacttgactg ctgctaaaat cattgactgc actattcaga gccagctcct ttatcaactg
     6541 ggaaaactca ataattaaaa ttgttttacc tgtcacacta agggcagtga atgaggatta
     6601 ccctttttcc acttcatgaa caatcaccga ctaaaatttt acatcccgtc atgcctttat
     6661 taaactttag acctgtgcta ttccagtgtg gtagccacga gcacatgtgc ctattgagat
     6721 tcaaattaat taaaacttaa tttagggctt ccctggtggc gcagtggttg agagtccgcc
     6781 tgccgatgca ggggacacgg gttcgtgccc cggtctggga ggatcccacg tgccgcggag
     6841 cggctgggcc cgtgagccat ggccgctgag cctgcgcgtc cggagcctgt cctccgcaac
     6901 gggagaggcc acaacagtga gaggcccgcg taacgcataa aaaaaaaaaa aaaaaaaaaa
     6961 aaaacttaat ttaaagctta gttaccagtt gcactagccg tatctcaggc gctcagtagg
     7021 cgtgcagcta gcagcactga tgtggagcgt ttcctcttca cggagagtct tgttggacag
     7081 tgccgcctag agcacgcttg gatccatatt tttcttcctt cgcaaaatag atttgttttc
     7141 ttattgcatg ataagaaaac agatttattg ttctctgtcc ctgtttgtaa agctgtgttt
     7201 gttaaggatt tgacctggtg gagccattta ttctgtttct aaaactaaac gtcctccatg
     7261 agtcctacaa attacatgac gtatgaaaga ccagcaacct tttctttcgt tcatcccatt
     7321 cagatggctg ttgactcaca cacacatgca cacatgcata catacgtaca taaagctgcc
     7381 cagcaacaga tcagagcggg agcgccccct tcgctgctcc agggaaccca caggaatcag
     7441 ctgcttgaaa cacagcagtg ggctgtggtg ctgaggttgc aatgctaatc tagttcatgt
     7501 cccagacacc gtctctcatg cttttcccac agaggtctgc taacgtacag cagtaaagta
     7561 gtcatttgca agaatttcat tcttttagct actcgatgac gctctggggt gttgctgacc
     7621 tgtcagaaat tttacaccta aaaccagtca tgataccttt taatccctct tagtttttct
     7681 tcttctgatg tgatgtttta aattttttca atcactgaac ttcgagaaag ggaaattttg
     7741 tttttatctg ctgcttcaat ccttgcaatc ttcgttgtta ataccgtaga gttcattgtg
     7801 aatcactttt tctcaaacag gagattgggg agccttgaat cccaaagagc ttgctgtcag
     7861 ctgaggtttg tggcctgctt aaagcttggg acacaggccg agcaagggag agagaggata
     7921 gagcgttacc gcttgagcag gaatggtggc catgttccct ttcacgcgcg gtgcattgat
     7981 agattggtgg tagctgccag aacaccgggt taagagaaaa gtagtgacga ggtagattcc
     8041 gcgggtgggt gtgatcggct ggtgatgtct gccactgggc acagagggag tgtggcagca
     8101 cggaggctgt gccgtcacca tgcccggctc acgtgaagaa agagggtggg gggaaaggag
     8161 gaaagcaaca cagtttgttt gggtgcttgc acacgtctat tctgttctcg tgaaacagtt
     8221 ccaagaacgt caaaatctct tcaattaata gcgctactgt tgccattacc attttgtaaa
     8281 cccgctttgt tttccactcg gcagccccag ggcagactca tggacgacgc ctccactgct
     8341 gccgcgtgat gttcaggacg ggccttggct gttcctacgg agacgccaga cggaagtgtc
     8401 tgcgttttcc gtggtgaacc gtagcttgat cgtggtgcaa gttaatcttt gctgattatt
     8461 aatggatgtt atagcaactc ttcagaggaa ctcatgctta aaatattagg aaaatccatc
     8521 ctcttttata gttttcacta ataaatattt gaaatctgtc agtgtgacgt gaaaggatgt
     8581 cagtcctttg ttactgttga aagtcatttt atggatagta acgtcttttc gaagtaaggg
     8641 atttgcactt gcagtggccg aggaaagata agcatctgaa atatgactgg acaaggggaa
     8701 cacgtgccag tgtctgcccc aggaaagttc tgaatcccca ggtgtctctt tcagagttgg
     8761 ctaaaccgga ggtaaatcca tcctcataaa tctagtgtgt gctcagaata catacacagg
     8821 aaccggaaag tagtcacgtg actgatgcag aaaacttcca gaaagtttta atcagagcaa
     8881 tttaagatgt ctaaaaaata tctttgctta ccatcaaaac atgtcaaata ggttcagctt
     8941 gcagccaaaa cacggatcat ttatgaagca ggtttgtatt tataagtatg ttaacaagat
     9001 ccttacccat cagtatctga actgcaagat tctgattcta agcataattc cctaaactaa
     9061 aagtttttga gaaaggtgca atgtctaaat aagagatttt agttatgttg tgcgatttga
     9121 aaagaactat ttaaaacttc tgaaaattca tgtaaataaa aatcatattg tgaaaatcct
     9181 ctttgttaaa atatcttaat ttaaaactac cccatttccc agagattttt attgtttaaa
     9241 agtctaggag tttcaaaaag gaaaaggatc atgggaataa atatgttctc tttcaga
//
LOCUS       XM_032618314            2624 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 4 (RWDD4),
            transcript variant X1, mRNA.
ACCESSION   XM_032618314
VERSION     XM_032618314.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2624
                     /gene="RWDD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746711"
     CDS             261..851
                     /gene="RWDD4"
                     /codon_start=1
                     /product="RWD domain-containing protein 4 isoform X1"
                     /protein_id="XP_032474205.1"
                     /db_xref="GeneID:116746711"
                     /translation="MSANEDQEMELEALRSIYEGDESFRELSPVSFQYRIGENGDPKA
                     FLIEISWTETYPQTPPIISMNAFFNNTIDVYLVHCRSSAVKQSILAKLQEAVEVNLGT
                     AMTYTLFEYAKDSKEQLMENHHPVHSAASISNIISVETPNTAPSSKKKDKKEQLSKAQ
                     KRKLADKTDHKGELPRGWNWVDVVKHLSKTGSKDDE"
     misc_feature    282..617
                     /gene="RWDD4"
                     /note="RWD domain of RWD domain-containing protein 4
                     (RWDD4) and related proteins; Region: RWD-RWDD4; cd23817"
                     /db_xref="CDD:467653"
ORIGIN      
        1 ttaccgtctt tctccctctc ctgctactcg ctggctccac tgtttcggag gccgctggct
       61 cctcgcttgc aatcctccgc tgacggcttc gcgctgcccg gggaccggga acccgcgaga
      121 ctctcgtctg cggtgctaag ggtgtgcctc agcagcccaa ggcgcagaag agggacgccc
      181 cggccttggg gccactgccc tcgcattatt ttcgttgtcg cgaacgccgt ccgcccggga
      241 ggcgccccgt gaccggcgcg atgagtgcca acgaggacca ggagatggaa ctggaggcat
      301 tgcgttctat ttatgaagga gatgaaagtt tccgggaatt aagtccggtt tcatttcaat
      361 ataggatagg tgaaaacggt gatcccaaag ccttcctaat agagatttcc tggacagaaa
      421 cctatcccca gacacctcca atcatatcta tgaacgcctt ttttaacaac accatcgatg
      481 tatatcttgt gcattgcaga tcatcagctg taaagcagag catattagcc aagttacagg
      541 aagcagtgga agtcaatctc gggacggcca tgacctacac attgtttgaa tatgccaagg
      601 acagcaaaga gcagctcatg gagaatcacc atcctgtcca ttcggctgcg tccataagca
      661 atatcatctc agttgaaact cctaacacag ccccatcaag taagaaaaaa gacaaaaaag
      721 aacaactctc aaaagcccag aaacgtaaac tggcagataa aacagatcac aaaggagaac
      781 ttcctcgagg ttggaactgg gttgatgtgg tgaagcattt aagcaaaact ggctctaaag
      841 atgatgaata gcacttggaa tttgagacga gggaggaaca gcatccttta aaaagtaaac
      901 tgggttcaaa atctttcatt actcttttct ggtattgagg tggctttcta taaaacaatt
      961 ttttttgtat gtttcttatg taaaaacatg ttttaagctg aaagttcatg aagagatctg
     1021 gttgtattaa attactttca caaacttgcc ttaataaaag gtgaaaatgt tactgtttag
     1081 tatactttat aaagccaatt ggcctttata aatggacaaa tatggagaat tataaatcat
     1141 cagtgttaat ttatgtgatc ttattctggt ggatgtgatt ttttttttta aggagtatga
     1201 agcgcttttc aaattctcat cccagtggag cagaagactg agtgaacagt gagttcacag
     1261 cgtgatccat attaataggc ttctcatctt tatgtcttca tcccttcttt ctcttaatta
     1321 ctgaagcata aattgcttca gagaaattta aatactagta tttgaacttt atacataata
     1381 ttctttgtag ttccttttta tttttcaagg gtgaactgct ttttaataaa tgaatatctg
     1441 tttatacttt cctcctggtt tgggttatgt ttgatcatga gagctttcaa tggtatgtgg
     1501 aataggagaa agaaaaaaaa aaaaaccaaa tctgccaaat acattagaaa gcatttgact
     1561 ggaagtgctg gttcctattt aaaaccgttc cctttgctgc atataccaaa atgggagtaa
     1621 aagatgcctt aatatttaat ttttatattg ttagagacaa tggttttcat aaattcctat
     1681 ttatccgttg ttgtgtattt ttagttgttt gataactgag tccttctaag tggtttcaca
     1741 taaaaccaca tttcaagcat tgtttctttt caagtatcca aatgtatgtc tgagcccact
     1801 catctttgta aaaatagaca tagaagtctt tcagatgctg ttttagcagg aagttactga
     1861 tgtgtatgtg cgatttacag tgactatgta tgtactcccc agcttgaaaa gcacttagaa
     1921 ctactgctgt ggtttctgga agagttagtt gttcgttcct caattacacc tgtgcagctc
     1981 gggtctgggt ttttaaagaa tagttaactt ttaaagaaat ttctttatca aaagagcagt
     2041 ttgagttata tccatggttt ttgctgggtt aacattggct tcagttaaat cgtttcaatt
     2101 ataaagtaag tataactatg gtgaagaagc ttgtctcatt tttaaatgct gagtcacatt
     2161 ttatttcttg aattaatacg atagaaacat cgaaattcag ggccactgga atatgccaac
     2221 gttcttgttt tggggttgtg tgtatagttt ttgttgtgct gatttgtttg cttgtttttt
     2281 aaagaaacgg aaactgctat gtctgctagt ggaagaagat gctttgtttt gctctgaaga
     2341 ttctgaaatt attccggcat attgtggttc atagatgaca aagaataatg ctagttaaat
     2401 gccaatgaac tatttttact ctttttatac gaaatgtaca aatttcgggg cagggggtgg
     2461 ggtgatggtg gcagcggtgc ctcttactac cttatgtaaa acacttgaac gttctcatca
     2521 atattgccat catctgttta atactcccag tatattttct caacgtctgt ttacctaaag
     2581 ttgtatggaa tgacataata agcaataaat ctgaattaca ctca
//
LOCUS       XM_032618315            2326 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 4 (RWDD4),
            transcript variant X2, mRNA.
ACCESSION   XM_032618315
VERSION     XM_032618315.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2326
                     /gene="RWDD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746711"
     CDS             261..851
                     /gene="RWDD4"
                     /codon_start=1
                     /product="RWD domain-containing protein 4 isoform X1"
                     /protein_id="XP_032474206.1"
                     /db_xref="GeneID:116746711"
                     /translation="MSANEDQEMELEALRSIYEGDESFRELSPVSFQYRIGENGDPKA
                     FLIEISWTETYPQTPPIISMNAFFNNTIDVYLVHCRSSAVKQSILAKLQEAVEVNLGT
                     AMTYTLFEYAKDSKEQLMENHHPVHSAASISNIISVETPNTAPSSKKKDKKEQLSKAQ
                     KRKLADKTDHKGELPRGWNWVDVVKHLSKTGSKDDE"
     misc_feature    282..617
                     /gene="RWDD4"
                     /note="RWD domain of RWD domain-containing protein 4
                     (RWDD4) and related proteins; Region: RWD-RWDD4; cd23817"
                     /db_xref="CDD:467653"
ORIGIN      
        1 ttaccgtctt tctccctctc ctgctactcg ctggctccac tgtttcggag gccgctggct
       61 cctcgcttgc aatcctccgc tgacggcttc gcgctgcccg gggaccggga acccgcgaga
      121 ctctcgtctg cggtgctaag ggtgtgcctc agcagcccaa ggcgcagaag agggacgccc
      181 cggccttggg gccactgccc tcgcattatt ttcgttgtcg cgaacgccgt ccgcccggga
      241 ggcgccccgt gaccggcgcg atgagtgcca acgaggacca ggagatggaa ctggaggcat
      301 tgcgttctat ttatgaagga gatgaaagtt tccgggaatt aagtccggtt tcatttcaat
      361 ataggatagg tgaaaacggt gatcccaaag ccttcctaat agagatttcc tggacagaaa
      421 cctatcccca gacacctcca atcatatcta tgaacgcctt ttttaacaac accatcgatg
      481 tatatcttgt gcattgcaga tcatcagctg taaagcagag catattagcc aagttacagg
      541 aagcagtgga agtcaatctc gggacggcca tgacctacac attgtttgaa tatgccaagg
      601 acagcaaaga gcagctcatg gagaatcacc atcctgtcca ttcggctgcg tccataagca
      661 atatcatctc agttgaaact cctaacacag ccccatcaag taagaaaaaa gacaaaaaag
      721 aacaactctc aaaagcccag aaacgtaaac tggcagataa aacagatcac aaaggagaac
      781 ttcctcgagg ttggaactgg gttgatgtgg tgaagcattt aagcaaaact ggctctaaag
      841 atgatgaata gcacttggaa tttgagacga gggaggaaca gcatccttta aaaagagtat
      901 gaagcgcttt tcaaattctc atcccagtgg agcagaagac tgagtgaaca gtgagttcac
      961 agcgtgatcc atattaatag gcttctcatc tttatgtctt catcccttct ttctcttaat
     1021 tactgaagca taaattgctt cagagaaatt taaatactag tatttgaact ttatacataa
     1081 tattctttgt agttcctttt tatttttcaa gggtgaactg ctttttaata aatgaatatc
     1141 tgtttatact ttcctcctgg tttgggttat gtttgatcat gagagctttc aatggtatgt
     1201 ggaataggag aaagaaaaaa aaaaaaacca aatctgccaa atacattaga aagcatttga
     1261 ctggaagtgc tggttcctat ttaaaaccgt tccctttgct gcatatacca aaatgggagt
     1321 aaaagatgcc ttaatattta atttttatat tgttagagac aatggttttc ataaattcct
     1381 atttatccgt tgttgtgtat ttttagttgt ttgataactg agtccttcta agtggtttca
     1441 cataaaacca catttcaagc attgtttctt ttcaagtatc caaatgtatg tctgagccca
     1501 ctcatctttg taaaaataga catagaagtc tttcagatgc tgttttagca ggaagttact
     1561 gatgtgtatg tgcgatttac agtgactatg tatgtactcc ccagcttgaa aagcacttag
     1621 aactactgct gtggtttctg gaagagttag ttgttcgttc ctcaattaca cctgtgcagc
     1681 tcgggtctgg gtttttaaag aatagttaac ttttaaagaa atttctttat caaaagagca
     1741 gtttgagtta tatccatggt ttttgctggg ttaacattgg cttcagttaa atcgtttcaa
     1801 ttataaagta agtataacta tggtgaagaa gcttgtctca tttttaaatg ctgagtcaca
     1861 ttttatttct tgaattaata cgatagaaac atcgaaattc agggccactg gaatatgcca
     1921 acgttcttgt tttggggttg tgtgtatagt ttttgttgtg ctgatttgtt tgcttgtttt
     1981 ttaaagaaac ggaaactgct atgtctgcta gtggaagaag atgctttgtt ttgctctgaa
     2041 gattctgaaa ttattccggc atattgtggt tcatagatga caaagaataa tgctagttaa
     2101 atgccaatga actattttta ctctttttat acgaaatgta caaatttcgg ggcagggggt
     2161 ggggtgatgg tggcagcggt gcctcttact accttatgta aaacacttga acgttctcat
     2221 caatattgcc atcatctgtt taatactccc agtatatttt ctcaacgtct gtttacctaa
     2281 agttgtatgg aatgacataa taagcaataa atctgaatta cactca
//
LOCUS       XM_032618316            2600 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 4 (RWDD4),
            transcript variant X3, mRNA.
ACCESSION   XM_032618316
VERSION     XM_032618316.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2600
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2600
                     /gene="RWDD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 11 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746711"
     CDS             261..827
                     /gene="RWDD4"
                     /codon_start=1
                     /product="RWD domain-containing protein 4 isoform X2"
                     /protein_id="XP_032474207.1"
                     /db_xref="GeneID:116746711"
                     /translation="MSANEDQEMELEALRSIYEGDESFRELSPVSFQYRIGENGDPKA
                     FLIEISWTETYPQTPPIISMNAFFNNTISSAVKQSILAKLQEAVEVNLGTAMTYTLFE
                     YAKDSKEQLMENHHPVHSAASISNIISVETPNTAPSSKKKDKKEQLSKAQKRKLADKT
                     DHKGELPRGWNWVDVVKHLSKTGSKDDE"
     misc_feature    282..593
                     /gene="RWDD4"
                     /note="RWD domain of RWD domain-containing protein 4
                     (RWDD4) and related proteins; Region: RWD-RWDD4; cd23817"
                     /db_xref="CDD:467653"
ORIGIN      
        1 ttaccgtctt tctccctctc ctgctactcg ctggctccac tgtttcggag gccgctggct
       61 cctcgcttgc aatcctccgc tgacggcttc gcgctgcccg gggaccggga acccgcgaga
      121 ctctcgtctg cggtgctaag ggtgtgcctc agcagcccaa ggcgcagaag agggacgccc
      181 cggccttggg gccactgccc tcgcattatt ttcgttgtcg cgaacgccgt ccgcccggga
      241 ggcgccccgt gaccggcgcg atgagtgcca acgaggacca ggagatggaa ctggaggcat
      301 tgcgttctat ttatgaagga gatgaaagtt tccgggaatt aagtccggtt tcatttcaat
      361 ataggatagg tgaaaacggt gatcccaaag ccttcctaat agagatttcc tggacagaaa
      421 cctatcccca gacacctcca atcatatcta tgaacgcctt ttttaacaac accatatcat
      481 cagctgtaaa gcagagcata ttagccaagt tacaggaagc agtggaagtc aatctcggga
      541 cggccatgac ctacacattg tttgaatatg ccaaggacag caaagagcag ctcatggaga
      601 atcaccatcc tgtccattcg gctgcgtcca taagcaatat catctcagtt gaaactccta
      661 acacagcccc atcaagtaag aaaaaagaca aaaaagaaca actctcaaaa gcccagaaac
      721 gtaaactggc agataaaaca gatcacaaag gagaacttcc tcgaggttgg aactgggttg
      781 atgtggtgaa gcatttaagc aaaactggct ctaaagatga tgaatagcac ttggaatttg
      841 agacgaggga ggaacagcat cctttaaaaa gtaaactggg ttcaaaatct ttcattactc
      901 ttttctggta ttgaggtggc tttctataaa acaatttttt ttgtatgttt cttatgtaaa
      961 aacatgtttt aagctgaaag ttcatgaaga gatctggttg tattaaatta ctttcacaaa
     1021 cttgccttaa taaaaggtga aaatgttact gtttagtata ctttataaag ccaattggcc
     1081 tttataaatg gacaaatatg gagaattata aatcatcagt gttaatttat gtgatcttat
     1141 tctggtggat gtgatttttt tttttaagga gtatgaagcg cttttcaaat tctcatccca
     1201 gtggagcaga agactgagtg aacagtgagt tcacagcgtg atccatatta ataggcttct
     1261 catctttatg tcttcatccc ttctttctct taattactga agcataaatt gcttcagaga
     1321 aatttaaata ctagtatttg aactttatac ataatattct ttgtagttcc tttttatttt
     1381 tcaagggtga actgcttttt aataaatgaa tatctgttta tactttcctc ctggtttggg
     1441 ttatgtttga tcatgagagc tttcaatggt atgtggaata ggagaaagaa aaaaaaaaaa
     1501 accaaatctg ccaaatacat tagaaagcat ttgactggaa gtgctggttc ctatttaaaa
     1561 ccgttccctt tgctgcatat accaaaatgg gagtaaaaga tgccttaata tttaattttt
     1621 atattgttag agacaatggt tttcataaat tcctatttat ccgttgttgt gtatttttag
     1681 ttgtttgata actgagtcct tctaagtggt ttcacataaa accacatttc aagcattgtt
     1741 tcttttcaag tatccaaatg tatgtctgag cccactcatc tttgtaaaaa tagacataga
     1801 agtctttcag atgctgtttt agcaggaagt tactgatgtg tatgtgcgat ttacagtgac
     1861 tatgtatgta ctccccagct tgaaaagcac ttagaactac tgctgtggtt tctggaagag
     1921 ttagttgttc gttcctcaat tacacctgtg cagctcgggt ctgggttttt aaagaatagt
     1981 taacttttaa agaaatttct ttatcaaaag agcagtttga gttatatcca tggtttttgc
     2041 tgggttaaca ttggcttcag ttaaatcgtt tcaattataa agtaagtata actatggtga
     2101 agaagcttgt ctcattttta aatgctgagt cacattttat ttcttgaatt aatacgatag
     2161 aaacatcgaa attcagggcc actggaatat gccaacgttc ttgttttggg gttgtgtgta
     2221 tagtttttgt tgtgctgatt tgtttgcttg ttttttaaag aaacggaaac tgctatgtct
     2281 gctagtggaa gaagatgctt tgttttgctc tgaagattct gaaattattc cggcatattg
     2341 tggttcatag atgacaaaga ataatgctag ttaaatgcca atgaactatt tttactcttt
     2401 ttatacgaaa tgtacaaatt tcggggcagg gggtggggtg atggtggcag cggtgcctct
     2461 tactacctta tgtaaaacac ttgaacgttc tcatcaatat tgccatcatc tgtttaatac
     2521 tcccagtata ttttctcaac gtctgtttac ctaaagttgt atggaatgac ataataagca
     2581 ataaatctga attacactca
//
LOCUS       XR_004347850            3222 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 4 (RWDD4),
            transcript variant X4, misc_RNA.
ACCESSION   XR_004347850
VERSION     XR_004347850.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3222
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3222
                     /gene="RWDD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 93% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746711"
     misc_RNA        1..3222
                     /gene="RWDD4"
                     /product="RWD domain containing 4, transcript variant X4"
                     /db_xref="GeneID:116746711"
ORIGIN      
        1 ttaccgtctt tctccctctc ctgctactcg ctggctccac tgtttcggag gccgctggct
       61 cctcgcttgc aatcctccgc tgacggcttc gcgctgcccg gggaccggga acccgcgaga
      121 ctctcgtctg cggtgctaag ggtgtgcctc agcagcccaa ggcgcagaag agggacgccc
      181 cggccttggg gccactgccc tcgcattatt ttcgttgtcg cgaacgccgt ccgcccggga
      241 ggcgccccgt gaccggcgcg atgagtgcca acgaggacca ggagatggaa ctggaggcat
      301 tgcgttctat ttatgaagga gatgaaagtt tccgggaatt aagtccggtt tcatttcaat
      361 ataggatagg tgaaaacggt gatcccaaag ccttcctaat agagatttcc tggacagaaa
      421 cctatcccca gacacctcca atcatatcta tgaacgcctt ttttaacaac accatatcat
      481 cagctgtaaa gcagagcata ttagccaagt tacaggaagc agtggaagtc aatctcggga
      541 cggccatgac ctacacattg tttgaatatg ccaaggacag caaagagcag ctcatggaga
      601 atcaccatcc tgtccattcg gctgcgtcca taagcaatat catctcagtt gaaactccta
      661 acacagcccc atcaagtaag aaaaaagaca aaaaagaaca actctcaaaa gcccagaaac
      721 gtaaactggc agataaaaca ggtttgtgtt attttttttc tttgatagca cacgtaactg
      781 ggttgctttt tggtatcata tggatgctta ataagtatat ttagatttag aagattagtt
      841 ctctatactc ttcattcttg gaacatttgg atcagagact gttttaggtc acagatgtat
      901 attgaaaata tttactacta ctttaccaca agagataaac atttgagaag aaggtcaagt
      961 ggcaaagtaa ctataaatga atctgaagat tgtagaccat tagaatagtg tacagatgtg
     1021 tgtcctactg gtaccctctc tgacatgttt ggaattttcc tgtttgttta cctttatgac
     1081 agataagtgt atttttgaaa tttttttgaa atatagcttt tatctgaaat gaagtctggt
     1141 ataccatcaa atcttaacac aagaaataat ttaatgtttt cgtctgtagt tgacttactt
     1201 atacaacaag atttaagaat atatattttg tcctttttct ttatttaacc taaaactttg
     1261 caaattgaca tcaatctgta aacttttttc cagttaagga aaatgaggac gttatcatgt
     1321 gtgcgtatag ctatttctat ccacatacac aagtgtgtac gtatactgac gtctgtatgt
     1381 gtgtgttatt gctgtatggt tacaagctgc cctttattaa aagaagtgac ccttttactt
     1441 tggtgaagag gtttaaaata acaccctttc ttttataaag ttatggtagt ttttggttgt
     1501 ttatgttttg ttcaatgtca tttgtggcaa aataaaaaga aagcagccgt gttggccctc
     1561 aaaatacatt ttttgagatc gtattggttt atgaaatagg aaatctggga ctccattata
     1621 cctactgtca aagcagcatt aaagtataaa caactgaagc agtaaattgt tagccattat
     1681 aatctgtttt ttagaatttt tgttcatctc tttccagaat gttttagcat atatgtcagt
     1741 tagtttgtta ctgttgcttt catacataat gacgtacact tgttcccttc cattactacc
     1801 tccctacctc cctctccttg gtgacgcccc cctaaagtcc gtatcttcct atcagtgtgg
     1861 tgcaggagct tgtgacttga aacttgcatt ctaaataaaa atttaatggg acagtcgtgg
     1921 cattgtgggt gagttttggt taccagaatt ggtgatctgt ccccgttccc ccttataacc
     1981 ttataaccag tgagataagc ttcttatctg tccccgttcc cccttataac cagtgagata
     2041 agattcttat tggcatgaag gagaaaagag ccattagcat ctaaaattga gctccagtga
     2101 tacagctttt ctcctgtaag aatcacaggg ttagtttctg tttctcttac tatacaatta
     2161 atgtccttga tttgaatgca gattttgaag gtttcataaa atgagacata tatagataca
     2221 tgaagcaaag aggaaatcaa gatattttag attgaaaatt tttagactac atttattaaa
     2281 ctatttttca aatttgaata aaagagtgaa attacttcat aaactataaa ttcttataaa
     2341 agggttgagc tcgcttttaa gcgctcccaa cagattaaag ccctgattaa agaatgtcag
     2401 gttaaataat ggttatttta tcagagcaca gcagttaata aataagttgg cccggcgtcc
     2461 tcttaggttt gcaggcagac gtgttgagaa ggcttcttgt cttgagcctg cttcctggta
     2521 tgaacactaa ctcacaaaag agcaaactga cccaacttct cacttcagta agcaaggagc
     2581 gtttattatt taaattttta ataacatttg ttatgtagag tagtatataa aatcgtattt
     2641 aaatttaaat attaccgatt ggtcttagat ataaagttac tgttttcatc ctttagatca
     2701 caaaggagaa cttcctcgag gttggaactg ggttgatgtg gtgaaggtat ttaagcaaaa
     2761 ctggctctaa agatgatgaa tagcacttgg aatttgagac gagggaggaa cagcatcctt
     2821 taaaaagagt atgaagcgct tttcaaattc tcatcccagt ggagcagaag actgagtgaa
     2881 caaaacggaa actgctatgt ctgctagtgg aagaagatgc tttgttttgc tctgaagatt
     2941 ctgaaattat tccggcatat tgtggttcat agatgacaaa gaataatgct agttaaatgc
     3001 caatgaacta tttttactct ttttatacga aatgtacaaa tttcggggca gggggtgggg
     3061 tgatggtggc agcggtgcct cttactacct tatgtaaaac acttgaacgt tctcatcaat
     3121 attgccatca tctgtttaat actcccagta tattttctca acgtctgttt acctaaagtt
     3181 gtatggaatg acataataag caataaatct gaattacact ca
//
LOCUS       XM_032618317            2601 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 4 (RWDD4),
            transcript variant X5, mRNA.
ACCESSION   XM_032618317
VERSION     XM_032618317.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2601
                     /gene="RWDD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746711"
     CDS             261..815
                     /gene="RWDD4"
                     /codon_start=1
                     /product="RWD domain-containing protein 4 isoform X3"
                     /protein_id="XP_032474208.1"
                     /db_xref="GeneID:116746711"
                     /translation="MSANEDQEMELEALRSIYEGDESFRELSPVSFQYRIGENGDPKA
                     FLIEISWTETYPQTPPIISMNAFFNNTISSAVKQSILAKLQEAVEVNLGTAMTYTLFE
                     YAKDSKEQLMENHHPVHSAASISNIISVETPNTAPSSKKKDKKEQLSKAQKRKLADKT
                     DHKGELPRGWNWVDVVKVFKQNWL"
     misc_feature    282..593
                     /gene="RWDD4"
                     /note="RWD domain of RWD domain-containing protein 4
                     (RWDD4) and related proteins; Region: RWD-RWDD4; cd23817"
                     /db_xref="CDD:467653"
ORIGIN      
        1 ttaccgtctt tctccctctc ctgctactcg ctggctccac tgtttcggag gccgctggct
       61 cctcgcttgc aatcctccgc tgacggcttc gcgctgcccg gggaccggga acccgcgaga
      121 ctctcgtctg cggtgctaag ggtgtgcctc agcagcccaa ggcgcagaag agggacgccc
      181 cggccttggg gccactgccc tcgcattatt ttcgttgtcg cgaacgccgt ccgcccggga
      241 ggcgccccgt gaccggcgcg atgagtgcca acgaggacca ggagatggaa ctggaggcat
      301 tgcgttctat ttatgaagga gatgaaagtt tccgggaatt aagtccggtt tcatttcaat
      361 ataggatagg tgaaaacggt gatcccaaag ccttcctaat agagatttcc tggacagaaa
      421 cctatcccca gacacctcca atcatatcta tgaacgcctt ttttaacaac accatatcat
      481 cagctgtaaa gcagagcata ttagccaagt tacaggaagc agtggaagtc aatctcggga
      541 cggccatgac ctacacattg tttgaatatg ccaaggacag caaagagcag ctcatggaga
      601 atcaccatcc tgtccattcg gctgcgtcca taagcaatat catctcagtt gaaactccta
      661 acacagcccc atcaagtaag aaaaaagaca aaaaagaaca actctcaaaa gcccagaaac
      721 gtaaactggc agataaaaca gatcacaaag gagaacttcc tcgaggttgg aactgggttg
      781 atgtggtgaa ggtatttaag caaaactggc tctaaagatg atgaatagca cttggaattt
      841 gagacgaggg aggaacagca tcctttaaaa agtaaactgg gttcaaaatc tttcattact
      901 cttttctggt attgaggtgg ctttctataa aacaattttt tttgtatgtt tcttatgtaa
      961 aaacatgttt taagctgaaa gttcatgaag agatctggtt gtattaaatt actttcacaa
     1021 acttgcctta ataaaaggtg aaaatgttac tgtttagtat actttataaa gccaattggc
     1081 ctttataaat ggacaaatat ggagaattat aaatcatcag tgttaattta tgtgatctta
     1141 ttctggtgga tgtgattttt ttttttaagg agtatgaagc gcttttcaaa ttctcatccc
     1201 agtggagcag aagactgagt gaacagtgag ttcacagcgt gatccatatt aataggcttc
     1261 tcatctttat gtcttcatcc cttctttctc ttaattactg aagcataaat tgcttcagag
     1321 aaatttaaat actagtattt gaactttata cataatattc tttgtagttc ctttttattt
     1381 ttcaagggtg aactgctttt taataaatga atatctgttt atactttcct cctggtttgg
     1441 gttatgtttg atcatgagag ctttcaatgg tatgtggaat aggagaaaga aaaaaaaaaa
     1501 aaccaaatct gccaaataca ttagaaagca tttgactgga agtgctggtt cctatttaaa
     1561 accgttccct ttgctgcata taccaaaatg ggagtaaaag atgccttaat atttaatttt
     1621 tatattgtta gagacaatgg ttttcataaa ttcctattta tccgttgttg tgtattttta
     1681 gttgtttgat aactgagtcc ttctaagtgg tttcacataa aaccacattt caagcattgt
     1741 ttcttttcaa gtatccaaat gtatgtctga gcccactcat ctttgtaaaa atagacatag
     1801 aagtctttca gatgctgttt tagcaggaag ttactgatgt gtatgtgcga tttacagtga
     1861 ctatgtatgt actccccagc ttgaaaagca cttagaacta ctgctgtggt ttctggaaga
     1921 gttagttgtt cgttcctcaa ttacacctgt gcagctcggg tctgggtttt taaagaatag
     1981 ttaactttta aagaaatttc tttatcaaaa gagcagtttg agttatatcc atggtttttg
     2041 ctgggttaac attggcttca gttaaatcgt ttcaattata aagtaagtat aactatggtg
     2101 aagaagcttg tctcattttt aaatgctgag tcacatttta tttcttgaat taatacgata
     2161 gaaacatcga aattcagggc cactggaata tgccaacgtt cttgttttgg ggttgtgtgt
     2221 atagtttttg ttgtgctgat ttgtttgctt gttttttaaa gaaacggaaa ctgctatgtc
     2281 tgctagtgga agaagatgct ttgttttgct ctgaagattc tgaaattatt ccggcatatt
     2341 gtggttcata gatgacaaag aataatgcta gttaaatgcc aatgaactat ttttactctt
     2401 tttatacgaa atgtacaaat ttcggggcag ggggtggggt gatggtggca gcggtgcctc
     2461 ttactacctt atgtaaaaca cttgaacgtt ctcatcaata ttgccatcat ctgtttaata
     2521 ctcccagtat attttctcaa cgtctgttta cctaaagttg tatggaatga cataataagc
     2581 aataaatctg aattacactc a
//
LOCUS       XR_004347851            2325 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 4 (RWDD4),
            transcript variant X6, misc_RNA.
ACCESSION   XR_004347851
VERSION     XR_004347851.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2325
                     /gene="RWDD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746711"
     misc_RNA        1..2325
                     /gene="RWDD4"
                     /product="RWD domain containing 4, transcript variant X6"
                     /db_xref="GeneID:116746711"
ORIGIN      
        1 ggagggggcg gggtctctgc cgttaccgtc tttctccctc tcctgctact cgctggctcc
       61 actgtttcgg aggccgctgg ctcctcgctt gcaatcctcc gctgacggct tcgcgctgcc
      121 cggggaccgg gaacccgcga gactctcgtc tgcggtgcta agggtgtgcc tcagcagccc
      181 aaggcgcaga agagggacgc cccggccttg gggccactgc cctcgcatta ttttcgttgt
      241 cgcgaacgcc gtccgcccgg gaggcgcccc gtgaccggcg cgatgagtgc caacgaggac
      301 caggagatgg aactggaggc attgcgttct atttatgaag gagatgaaag tttccgggaa
      361 ttaagtccgg tttcatttca atataggata ggtgaaaacg gtgatcccaa agccttccta
      421 atagagattt cctggacaga aacctatccc cagacacctc caatcatatc tatgaacgcc
      481 ttttttaaca acaccatatc atcagctgta aagcagagca tattagccaa gttacaggaa
      541 gcagtggaag tcaatctcgg gacggccatg acctacacat tgtttgaata tgccaaggac
      601 agcaaagagc agctcatgga gaatcaccat cctgtccatt cggctgcgtc cataagcaat
      661 atcatctcag ttgaaactcc taacacagcc ccatcaagta agaaaaaaga caaaaaagaa
      721 caactctcaa aagcccagaa acgtaaactg gcagataaaa cagatcacaa aggagaactt
      781 cctcgaggtt ggaactgggt tgatgtggtg aaggtattta agcaaaactg gctctaaaga
      841 tgatgaatag cacttggaat ttgagacgag ggaggaacag catcctttaa aaagagtatg
      901 aagcgctttt caaattctca tcccagtgga gcagaagact gagtgaacag tgagttcaca
      961 gcgtgatcca tattaatagg cttctcatct ttatgtcttc atcccttctt tctcttaatt
     1021 actgaagcat aaattgcttc agagaaattt aaatactagt atttgaactt tatacataat
     1081 attctttgta gttccttttt atttttcaag ggtgaactgc tttttaataa atgaatatct
     1141 gtttatactt tcctcctggt ttgggttatg tttgatcatg agagctttca atggtatgtg
     1201 gaataggaga aagaaaaaaa aaaaaaccaa atctgccaaa tacattagaa agcatttgac
     1261 tggaagtgct ggttcctatt taaaaccgtt ccctttgctg catataccaa aatgggagta
     1321 aaagatgcct taatatttaa tttttatatt gttagagaca atggttttca taaattccta
     1381 tttatccgtt gttgtgtatt tttagttgtt tgataactga gtccttctaa gtggtttcac
     1441 ataaaaccac atttcaagca ttgtttcttt tcaagtatcc aaatgtatgt ctgagcccac
     1501 tcatctttgt aaaaatagac atagaagtct ttcagatgct gttttagcag gaagttactg
     1561 atgtgtatgt gcgatttaca gtgactatgt atgtactccc cagcttgaaa agcacttaga
     1621 actactgctg tggtttctgg aagagttagt tgttcgttcc tcaattacac ctgtgcagct
     1681 cgggtctggg tttttaaaga atagttaact tttaaagaaa tttctttatc aaaagagcag
     1741 tttgagttat atccatggtt tttgctgggt taacattggc ttcagttaaa tcgtttcaat
     1801 tataaagtaa gtataactat ggtgaagaag cttgtctcat ttttaaatgc tgagtcacat
     1861 tttatttctt gaattaatac gatagaaaca tcgaaattca gggccactgg aatatgccaa
     1921 cgttcttgtt ttggggttgt gtgtatagtt tttgttgtgc tgatttgttt gcttgttttt
     1981 taaagaaacg gaaactgcta tgtctgctag tggaagaaga tgctttgttt tgctctgaag
     2041 attctgaaat tattccggca tattgtggtt catagatgac aaagaataat gctagttaaa
     2101 tgccaatgaa ctatttttac tctttttata cgaaatgtac aaatttcggg gcagggggtg
     2161 gggtgatggt ggcagcggtg cctcttacta ccttatgtaa aacacttgaa cgttctcatc
     2221 aatattgcca tcatctgttt aatactccca gtatattttc tcaacgtctg tttacctaaa
     2281 gttgtatgga atgacataat aagcaataaa tctgaattac actca
//
LOCUS       XM_032618318            2596 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RWD domain containing 4 (RWDD4),
            transcript variant X7, mRNA.
ACCESSION   XM_032618318
VERSION     XM_032618318.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2596
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2596
                     /gene="RWDD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746711"
     CDS             446..823
                     /gene="RWDD4"
                     /codon_start=1
                     /product="RWD domain-containing protein 4 isoform X4"
                     /protein_id="XP_032474209.1"
                     /db_xref="GeneID:116746711"
                     /translation="MNAFFNNTISSAVKQSILAKLQEAVEVNLGTAMTYTLFEYAKDS
                     KEQLMENHHPVHSAASISNIISVETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGE
                     LPRGWNWVDVVKHLSKTGSKDDE"
     misc_feature    <446..589
                     /gene="RWDD4"
                     /note="RWD, DRWD, and ELF domain family; Region:
                     RWD_DRWD_ELF-like; cl45901"
                     /db_xref="CDD:480265"
ORIGIN      
        1 ttaccgtctt tctccctctc ctgctactcg ctggctccac tgtttcggag gccgctggct
       61 cctcgcttgc aatcctccgc tgacggcttc gcgctgcccg gggaccggga acccgcgaga
      121 ctctcgtctg cggtgctaag ggtgtgcctc agcagcccaa ggcgcagaag agggacgccc
      181 cggccttggg gccactgccc tcgcattatt ttcgttgtcg cgaacgccgt ccgcccggga
      241 ggcgccccgt gaccggcgcg atgagtgcca acgaggacca ggagatggaa ctggaggcat
      301 tgcgttctat ttatgaagga gatgaaagtt tccgggaatt aagtccggtt tcatttcaat
      361 atagggtgaa aacggtgatc ccaaagcctt cctaatagag atttcctgga cagaaaccta
      421 tccccagaca cctccaatca tatctatgaa cgcctttttt aacaacacca tatcatcagc
      481 tgtaaagcag agcatattag ccaagttaca ggaagcagtg gaagtcaatc tcgggacggc
      541 catgacctac acattgtttg aatatgccaa ggacagcaaa gagcagctca tggagaatca
      601 ccatcctgtc cattcggctg cgtccataag caatatcatc tcagttgaaa ctcctaacac
      661 agccccatca agtaagaaaa aagacaaaaa agaacaactc tcaaaagccc agaaacgtaa
      721 actggcagat aaaacagatc acaaaggaga acttcctcga ggttggaact gggttgatgt
      781 ggtgaagcat ttaagcaaaa ctggctctaa agatgatgaa tagcacttgg aatttgagac
      841 gagggaggaa cagcatcctt taaaaagtaa actgggttca aaatctttca ttactctttt
      901 ctggtattga ggtggctttc tataaaacaa ttttttttgt atgtttctta tgtaaaaaca
      961 tgttttaagc tgaaagttca tgaagagatc tggttgtatt aaattacttt cacaaacttg
     1021 ccttaataaa aggtgaaaat gttactgttt agtatacttt ataaagccaa ttggccttta
     1081 taaatggaca aatatggaga attataaatc atcagtgtta atttatgtga tcttattctg
     1141 gtggatgtga tttttttttt taaggagtat gaagcgcttt tcaaattctc atcccagtgg
     1201 agcagaagac tgagtgaaca gtgagttcac agcgtgatcc atattaatag gcttctcatc
     1261 tttatgtctt catcccttct ttctcttaat tactgaagca taaattgctt cagagaaatt
     1321 taaatactag tatttgaact ttatacataa tattctttgt agttcctttt tatttttcaa
     1381 gggtgaactg ctttttaata aatgaatatc tgtttatact ttcctcctgg tttgggttat
     1441 gtttgatcat gagagctttc aatggtatgt ggaataggag aaagaaaaaa aaaaaaacca
     1501 aatctgccaa atacattaga aagcatttga ctggaagtgc tggttcctat ttaaaaccgt
     1561 tccctttgct gcatatacca aaatgggagt aaaagatgcc ttaatattta atttttatat
     1621 tgttagagac aatggttttc ataaattcct atttatccgt tgttgtgtat ttttagttgt
     1681 ttgataactg agtccttcta agtggtttca cataaaacca catttcaagc attgtttctt
     1741 ttcaagtatc caaatgtatg tctgagccca ctcatctttg taaaaataga catagaagtc
     1801 tttcagatgc tgttttagca ggaagttact gatgtgtatg tgcgatttac agtgactatg
     1861 tatgtactcc ccagcttgaa aagcacttag aactactgct gtggtttctg gaagagttag
     1921 ttgttcgttc ctcaattaca cctgtgcagc tcgggtctgg gtttttaaag aatagttaac
     1981 ttttaaagaa atttctttat caaaagagca gtttgagtta tatccatggt ttttgctggg
     2041 ttaacattgg cttcagttaa atcgtttcaa ttataaagta agtataacta tggtgaagaa
     2101 gcttgtctca tttttaaatg ctgagtcaca ttttatttct tgaattaata cgatagaaac
     2161 atcgaaattc agggccactg gaatatgcca acgttcttgt tttggggttg tgtgtatagt
     2221 ttttgttgtg ctgatttgtt tgcttgtttt ttaaagaaac ggaaactgct atgtctgcta
     2281 gtggaagaag atgctttgtt ttgctctgaa gattctgaaa ttattccggc atattgtggt
     2341 tcatagatga caaagaataa tgctagttaa atgccaatga actattttta ctctttttat
     2401 acgaaatgta caaatttcgg ggcagggggt ggggtgatgg tggcagcggt gcctcttact
     2461 accttatgta aaacacttga acgttctcat caatattgcc atcatctgtt taatactccc
     2521 agtatatttt ctcaacgtct gtttacctaa agttgtatgg aatgacataa taagcaataa
     2581 atctgaatta cactca
//
LOCUS       XM_032618319            6528 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WW and C2 domain containing 2 (WWC2),
            transcript variant X1, mRNA.
ACCESSION   XM_032618319
VERSION     XM_032618319.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6528
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6528
                     /gene="WWC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 64 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746712"
     CDS             159..3743
                     /gene="WWC2"
                     /codon_start=1
                     /product="protein WWC2 isoform X1"
                     /protein_id="XP_032474210.1"
                     /db_xref="GeneID:116746712"
                     /translation="MPRRAGSGQLPLPRGWEEARDYDGKVFYIDHNTRRTSWIDPRDR
                     LTKPLSFADCVGDELPWGWEAGFDPQIGVYYIDHINKTTQIEDPRKQWRGEQEKMLKD
                     YLSVAQDALRTQKELYHVKEQRLALALDEYVRLNDAYKEKSSSRTSLFSGSSSSTKYD
                     PDILKAEISTTRLRVKKLKRELSQMKQELLYKEQGFATLKQIDKKMSGGQSGYELSEA
                     KAILTELKSIRKAISSGEKEKQDLMQSLAKLQERFHLDQSIGRSEPDLRSSPVNSHLS
                     LSRQTLDAGSQTSISGDIGVRSRSNLAEKVRLSLQYEEAKRSMANLKIELSKLDSEAW
                     PGALDIEKEKLMLINEKEELLKELQFVTPREAHPRTSWRACGAERQRLEKELLSVRGA
                     PSRALAERLKLEERRKELLQKLEETTKLTTYLHSQLKNLSASTLSMSSGSSLGSLASS
                     RGSLNTSSRGSLNSLSSSELYYTSQGDQLDPDYQYKLDFLLQEKGGYIPSGPITTIHE
                     HEVAKSPSQPGRSGPCVAAAAAPGRAPALPEAPTSVASLSSRSSLSSLSPPGSPLVSE
                     GTFPLSPHDVVPLHHFSADLEDCELSSHFADIGLGDDQPLLDSDPGGAPPSLSEDKDL
                     TERTRALPHEGPADVEKSLPKRRGIHLLGEKTTCVSAAVSDESVAGDSGVYEAFVKQP
                     SEVEDVLYSEEDVAVTETAQVQIGLRYDAKRSSFMVIVAQLRNLHAFLIPHTSKVYFR
                     VALLPSSTDVSCLFRTKVHPAAESLLFGDVFRVAISQTALQQKTLRVDLCSVSKHQRE
                     ECLAGTQISLADLPFSNEIFTLWYNLLPSKQMPCKKNEDETEDSVFQPSQPLVDSIDL
                     DAVSALLARTSAELLAVEQELAQEEEEPEQEEEQRGPDGDWLTMQREASDEIVAEEGA
                     EVKLAEGSCCADDVSSRPSVPEMHEDTSKTENNCANDLGSQPPAGVPALVDKETNTDE
                     AGSAGVAVRPKDRSGLSARQRPFVRSSVIVRSQTFSPGERSQYVCRLNRSDSDSSTLA
                     KKSLFVRNSTERRSLRVKRTVCQPVLRRAAPECPVRTSLDLELDLQASLTRQSRLNDE
                     LQALRGLRQKLEDLKAQGETDLPPGVLEDERFQKLLRQAEKQAEQSKEEQKQDLSAEK
                     LMRQVSKDVCRLREQSRKVPRQVQSFREKIAYFTRAKISIPSLPADDV"
     misc_feature    192..281
                     /gene="WWC2"
                     /note="WW domain; Region: WW; pfam00397"
                     /db_xref="CDD:459800"
     misc_feature    333..422
                     /gene="WWC2"
                     /note="WW domain; Region: WW; pfam00397"
                     /db_xref="CDD:459800"
     misc_feature    <648..>1424
                     /gene="WWC2"
                     /note="RecF/RecN/SMC N terminal domain; Region: SMC_N;
                     cl47134"
                     /db_xref="CDD:481474"
     misc_feature    2259..2630
                     /gene="WWC2"
                     /note="C2 domain found in Human protein Kibra; Region:
                     C2_Kibra; cd08680"
                     /db_xref="CDD:176062"
     misc_feature    <3441..3668
                     /gene="WWC2"
                     /note="Phage DNA packaging protein Nu1; Region: Phage_Nu1;
                     pfam07471"
                     /db_xref="CDD:369382"
ORIGIN      
        1 agagcagggt ttcctgaggc gcccccgcgc gtggccccgc cgcgccccgc gccccgcagc
       61 ccctcgccgg cgcccgggtc gggccgggca gtcgcgttcc cgccgcgtcc cgcgcccggt
      121 ccctatggag gcgccgctcg ccggcgaggc cgccgaccat gcctaggagg gccgggagcg
      181 ggcagctgcc gctaccccgg ggctgggagg aggccaggga ctacgacggc aaggtcttct
      241 acatcgacca caacacccgg aggaccagct ggatcgaccc ccgggacagg ctaacgaagc
      301 ccttgtcgtt tgctgactgt gttggtgatg agctgccgtg gggatgggaa gccgggtttg
      361 accctcagat tggtgtctac tacatcgatc acataaacaa aaccacgcag attgaagatc
      421 caaggaaaca atggaggggg gagcaggaga aaatgctcaa ggactatctg tccgtggctc
      481 aggatgccct caggacgcag aaggagctgt accacgtgaa ggagcaaaga ctggccctgg
      541 ccttggatga atacgtccgg ctaaatgacg cctacaagga aaagtcgagc tctcgcacca
      601 gcttattctc aggatcttca tccagtacta aatatgaccc tgatatctta aaagctgaga
      661 tctccactac gcgattaagg gttaaaaagc tgaagcgaga actgtcacag atgaagcaag
      721 aattgctcta taaagaacaa ggctttgcaa ccttgaaaca aattgataaa aaaatgtctg
      781 gaggccagag tggctatgaa cttagtgaag ccaaagccat cctaactgaa ctgaagtcta
      841 tcagaaaggc tattagctca ggagaaaaag aaaaacaaga tctgatgcag agtcttgcta
      901 agctgcagga gcggtttcac ttggaccaga gcattggcag atctgagcca gacttgagat
      961 ccagtcctgt gaactctcat ttatctctct ccagacagac cctggatgcc ggatcacaaa
     1021 caagcatttc cggggatatc ggagtgagaa gtagatcaaa tttggctgaa aaggtcaggc
     1081 tgagcctcca gtatgaagaa gccaaaagaa gtatggccaa cttgaaaatc gaactgtcga
     1141 aactggacag tgaggcctgg cctggggcgc tggacattga gaaggagaag ctgatgctga
     1201 ttaacgagaa agaagaactt ctgaaagagc ttcagttcgt cacccccaga gaagcgcacc
     1261 cacggacgag ctggagagcc tgtggtgccg agaggcagcg gctggagaag gagctgctgt
     1321 cggtccgggg ggcgcccagc cgagctctgg ccgagagatt gaaattggaa gagcgaagga
     1381 aagagctgct acagaaactt gaagaaacta ctaaattaac tacatatttg cattcacaac
     1441 ttaaaaacct ctccgccagc acgctgtcca tgtcgtccgg gagcagcctg ggctcgctgg
     1501 cctccagccg ggggtctctg aacacgtcca gcagagggtc cctcaactcc ctcagttcca
     1561 gcgagctcta ctacaccagt cagggcgacc agctggaccc ggattatcag tataaactgg
     1621 acttcctcct gcaggagaaa ggtggctaca ttccttccgg acccatcacc accatccacg
     1681 aacacgaagt ggccaagtcc cccagccagc ctggccggag cggtccctgt gtggcagcgg
     1741 ccgcggcccc gggccgcgcc cccgccctgc ccgaggcccc cacgtccgtg gcgtccctgt
     1801 cctcccggtc ctccctttcc tccctgtccc caccgggctc tcccttggtc tcagaaggca
     1861 cgttccccct gtctccccac gacgtcgtcc ctctccatca cttctctgct gaccttgagg
     1921 actgtgaatt gagcagccac tttgcagaca ttggcctcgg agacgatcag ccgttgctgg
     1981 actctgaccc gggaggagcg cccccgtctc tctcagagga taaggacctc accgaacgca
     2041 ccagggcgct gccgcatgaa gggcctgcag atgtggaaaa atcattacca aaaagaagag
     2101 gaatccactt gcttggggag aaaaccactt gcgtgtcggc tgcggtctcg gatgagtccg
     2161 tggccgggga cagcggggtc tacgaagctt tcgtgaaaca gcccagtgaa gtcgaagatg
     2221 tcctgtacag tgaggaggac gtcgccgtca cggagacggc ccaggtgcag atcggactca
     2281 gatatgatgc aaaaaggtca agtttcatgg tgattgtagc acaactccga aatcttcacg
     2341 ccttcctgat acctcacact tcaaaagtat actttagagt tgctctgctt ccttcctcaa
     2401 ctgatgtcag ctgtctgttt cgaacgaaag tccatccagc cgcggagtcc ctgttattcg
     2461 gtgatgtgtt cagagtggcc atctcccaga cagccctgca gcagaagacg ctgagggtgg
     2521 atctgtgctc tgtcagtaaa caccaaaggg aagagtgcct ggcgggaact cagatcagcc
     2581 tggcagattt acccttttcc aatgagattt tcactctgtg gtataacttg cttccttcaa
     2641 agcaaatgcc gtgcaaaaag aacgaagatg aaactgagga ttcagtattt caaccaagcc
     2701 agccactagt cgattctata gatttggatg cagtgtcagc cttacttgca agaacatcag
     2761 ctgagctgtt ggctgtggaa caagaattag cacaagaaga agaagaacca gagcaggagg
     2821 aagagcaaag gggtccagat ggagattggt taaccatgca gagagaggcc tctgatgaaa
     2881 ttgtggctga ggaaggggct gaagtgaaat tggcagaggg cagttgctgt gcagacgacg
     2941 taagctcacg cccgagtgtg cctgagatgc atgaggacac aagtaagaca gaaaacaact
     3001 gtgccaacga ccttgggagt cagccacctg caggagtgcc tgccctggtt gataaagaga
     3061 caaataccga cgaggcgggc agtgccggtg tggcggtccg ccccaaagac cgcagcggcc
     3121 tgagcgcccg gcagcgcccc ttcgtgcgga gcagcgtgat tgtgcgctcg cagaccttct
     3181 cccccggcga gcggagccag tacgtctgca ggttaaatcg aagtgacagt gacagttcaa
     3241 ccctggctaa aaaatcacta tttgtgagaa actccactga acggcgaagt ttgagagtca
     3301 aaaggacggt gtgccagccg gtgctcagaa gggcagcacc cgaatgcccc gtgagaacct
     3361 ctctggacct ggagctggac ctgcaggcct cgctgacccg gcagagccgc ctgaacgacg
     3421 agctgcaggc tctgcggggc ctgaggcaga agctcgagga cctgaaagcc cagggcgaga
     3481 cggaccttcc gccgggtgtg ctggaggatg agaggttcca gaagcttctg cgacaggccg
     3541 agaagcaggc tgaacagtcc aaagaagagc agaagcaaga cctgagcgca gagaagctaa
     3601 tgaggcaggt gtccaaggac gtgtgccggc ttcgggagca gagccggaag gtgccccggc
     3661 aggtgcagtc cttcagggag aagatcgcct acttcaccag agcaaagata agcatcccgt
     3721 cgctgccggc tgatgacgtc tgattacatc gctgacgaga tcgtgttttc acctcttcat
     3781 ttcttaggga gggcaaaaga ctgaacgttt tcttgtttgg ggttttgttt tttgtttttg
     3841 gggggttttt gtaatataac tgtcaattct taaagaggtt ttatttcaca tcagattttc
     3901 aacatgttaa tttgtaaagt accttgaatg taattcttac atgtttaaaa aagaaaaaaa
     3961 aaaatcagat aaccaaaaca ggatcatctg gtacacagat gtacagtata cgcgtattgc
     4021 caatgggctt tatttgataa acatggaata gaggcgggac ccagcgcgta tcctatcaaa
     4081 gcggctgtgg agagatagct gagcagcgtg cggttttcgc ttttccttgt tttcgcatgg
     4141 gtgactatga agccggcagt ggcgccaggt gatacttggt gctagagggc agctcgttcg
     4201 gcgtgaggtc gaacttgagc gtgagcttca gtgcagagtg ccgggtccac ctgaaacagg
     4261 tgctgcgttc atttccatca cctctgtcgg aacactttgt ttccttaaaa cagctgcctt
     4321 tttttgtcct tttctatttg tctaaagaaa acaaaaacaa aatgctgagt gcaggaaggc
     4381 aagaatgcaa aggagcagtg ctccagccac actacagacc ccgtgattta ggactttaag
     4441 ggtagggaga tgaaagcaga aagccagtcc gcctcaaata cactaaaatc agcacgtcgg
     4501 tgagcagctg ctgcttctca ctcagcctgg ttgtgcgtca gtgttcagac gtgagtgtct
     4561 ggcttgcacc agtcatgctt cgtcctaggt gtgaggatgg taccaggtgg gtgaaggtag
     4621 gggcccaggg tgctgaggac acacagtgct ggtactgtgg agggaaacac attaacatca
     4681 cttgctgaaa ccaggaacag aggaaagggt acctcgattg aatcaagatt gccaaaaaat
     4741 tttaaaatac ttcagtaaac agatctctaa catttactag aaattacttt gcagctgtca
     4801 cttttaggga atcctatctg taacttgtgg taaggagttg ggaggcaaag agaagagagt
     4861 gcctggggag attattaatt tgaagtaaaa gctgagtcat ttgtaaaata taaataaata
     4921 tatattccag acaaacaaga tggaaactga ctcaagtttc ctccagtgga gaattttagc
     4981 ttacccaacc caagcacttc ttaaaagaaa caaatcccca ggttagctct gccagcataa
     5041 aaggctttta aaagaaatag ttttatgcaa attaaatcat gcatgttact gggtctgtaa
     5101 tactggaaga ggcaatgttt ggtgagccat cttatgtaac aagtgaaatc attttttttt
     5161 ttagagatga aaacatcatc ttaaaggaat gggcccctta agaaaaagaa acacaagttc
     5221 tattcctaag ctagaatcct cgttgttaag aatatttatt tgaaagtaat tacacatgtt
     5281 ttggaaggtt cattttatca gaatcaaaat tcagatcaag ccatttctga gcctagaact
     5341 gtaatgactt tttcctaagt gtcccaccat ttatatacaa aagtctttga aggaataact
     5401 ggacgtgaca ctactttgaa caaaaaccag cctcgtgaat tgactgagca cagtccttgc
     5461 aggcggccca gttcatcctg ttaggtgacc aaggagaact ggaggaagag caccgttcat
     5521 ccttgtcgag gtcaaatgtg aaaaacagaa gtttatttaa tgtagagtta aatgaaggtc
     5581 agctgttttc agcttcttag tttgaccatg aaaatgttta taggattatg tgtggttgta
     5641 ccgtacaatt ttattttctt catttattta tttacggtct tatttatgtt ctgtttaata
     5701 tatagttcgg ttctggccat cttaaatgtt tgacacagaa gagactatat tggaatattt
     5761 acagctttat aaattccatc agattagctg ttaacttttt gtacgacaaa gagtttcaga
     5821 caagcataaa agaataaaat ctgtctcagg ctggtagtta gcagttgtga ccaagatgct
     5881 tttggtttta ttttacagca tttgctcatt tctaacatga gagacaaact taatataatc
     5941 ctttttcact ctttaaaaat cagcaatagt gttatgtatt tataggcagc ttttaacaat
     6001 cctgtcatat ttgtactaac ccaaatgatt cacagtgaca aaacatttta ataacttgct
     6061 cacaaaacca tatggacaac atgaatttta atattataag tactattttt taaaggtaga
     6121 atttattctt cacagggtaa aaagaatgta atatttagtt ctcaagtttg aattatcagt
     6181 atgttattac aattttgtat atcagaatct aagtgttaca ggtacaaaaa gaatattgct
     6241 agccaaatga acaaagttta gctggatctc tgtagcatgc aaatcaaata aatttaaaat
     6301 ctttttttgc tattacttta tattgtatta aatatcaaaa gctcaggact gaactaaata
     6361 tttaatcagg ttaaattctg aatatgtttc tgttttaatt tgtctttttt gtaaaagtat
     6421 gcaaatacat cacatagatt aactctggtt tctgcacttt tcatgtgttt gtgggtggaa
     6481 aaaaattcag tgttttcttt ttaaaacaaa gatacatatt acctaata
//
LOCUS       XM_032618320            6100 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WW and C2 domain containing 2 (WWC2),
            transcript variant X2, mRNA.
ACCESSION   XM_032618320
VERSION     XM_032618320.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6100
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6100
                     /gene="WWC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 60 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746712"
     CDS             145..3315
                     /gene="WWC2"
                     /codon_start=1
                     /product="protein WWC2 isoform X2"
                     /protein_id="XP_032474211.1"
                     /db_xref="GeneID:116746712"
                     /translation="MNDSKGVIKLIFSGSSSSTKYDPDILKAEISTTRLRVKKLKREL
                     SQMKQELLYKEQGFATLKQIDKKMSGGQSGYELSEAKAILTELKSIRKAISSGEKEKQ
                     DLMQSLAKLQERFHLDQSIGRSEPDLRSSPVNSHLSLSRQTLDAGSQTSISGDIGVRS
                     RSNLAEKVRLSLQYEEAKRSMANLKIELSKLDSEAWPGALDIEKEKLMLINEKEELLK
                     ELQFVTPREAHPRTSWRACGAERQRLEKELLSVRGAPSRALAERLKLEERRKELLQKL
                     EETTKLTTYLHSQLKNLSASTLSMSSGSSLGSLASSRGSLNTSSRGSLNSLSSSELYY
                     TSQGDQLDPDYQYKLDFLLQEKGGYIPSGPITTIHEHEVAKSPSQPGRSGPCVAAAAA
                     PGRAPALPEAPTSVASLSSRSSLSSLSPPGSPLVSEGTFPLSPHDVVPLHHFSADLED
                     CELSSHFADIGLGDDQPLLDSDPGGAPPSLSEDKDLTERTRALPHEGPADVEKSLPKR
                     RGIHLLGEKTTCVSAAVSDESVAGDSGVYEAFVKQPSEVEDVLYSEEDVAVTETAQVQ
                     IGLRYDAKRSSFMVIVAQLRNLHAFLIPHTSKVYFRVALLPSSTDVSCLFRTKVHPAA
                     ESLLFGDVFRVAISQTALQQKTLRVDLCSVSKHQREECLAGTQISLADLPFSNEIFTL
                     WYNLLPSKQMPCKKNEDETEDSVFQPSQPLVDSIDLDAVSALLARTSAELLAVEQELA
                     QEEEEPEQEEEQRGPDGDWLTMQREASDEIVAEEGAEVKLAEGSCCADDVSSRPSVPE
                     MHEDTSKTENNCANDLGSQPPAGVPALVDKETNTDEAGSAGVAVRPKDRSGLSARQRP
                     FVRSSVIVRSQTFSPGERSQYVCRLNRSDSDSSTLAKKSLFVRNSTERRSLRVKRTVC
                     QPVLRRAAPECPVRTSLDLELDLQASLTRQSRLNDELQALRGLRQKLEDLKAQGETDL
                     PPGVLEDERFQKLLRQAEKQAEQSKEEQKQDLSAEKLMRQVSKDVCRLREQSRKVPRQ
                     VQSFREKIAYFTRAKISIPSLPADDV"
     misc_feature    172..>1092
                     /gene="WWC2"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; Region: EnvC; COG4942"
                     /db_xref="CDD:443969"
     misc_feature    1831..2202
                     /gene="WWC2"
                     /note="C2 domain found in Human protein Kibra; Region:
                     C2_Kibra; cd08680"
                     /db_xref="CDD:176062"
     misc_feature    <3013..3240
                     /gene="WWC2"
                     /note="Phage DNA packaging protein Nu1; Region: Phage_Nu1;
                     pfam07471"
                     /db_xref="CDD:369382"
ORIGIN      
        1 tctgtccgtg gctcaggatg ccctcaggac gcagaaggag ctgtaccacg tgaaggagca
       61 aagactggcc ctggccttgg atgaatacgt ccggctaaat gacgcctaca aggaaaagtc
      121 gagctctcgc accagctgtg tctgatgaat gacagtaaag gagttataaa gttaatattc
      181 tcaggatctt catccagtac taaatatgac cctgatatct taaaagctga gatctccact
      241 acgcgattaa gggttaaaaa gctgaagcga gaactgtcac agatgaagca agaattgctc
      301 tataaagaac aaggctttgc aaccttgaaa caaattgata aaaaaatgtc tggaggccag
      361 agtggctatg aacttagtga agccaaagcc atcctaactg aactgaagtc tatcagaaag
      421 gctattagct caggagaaaa agaaaaacaa gatctgatgc agagtcttgc taagctgcag
      481 gagcggtttc acttggacca gagcattggc agatctgagc cagacttgag atccagtcct
      541 gtgaactctc atttatctct ctccagacag accctggatg ccggatcaca aacaagcatt
      601 tccggggata tcggagtgag aagtagatca aatttggctg aaaaggtcag gctgagcctc
      661 cagtatgaag aagccaaaag aagtatggcc aacttgaaaa tcgaactgtc gaaactggac
      721 agtgaggcct ggcctggggc gctggacatt gagaaggaga agctgatgct gattaacgag
      781 aaagaagaac ttctgaaaga gcttcagttc gtcaccccca gagaagcgca cccacggacg
      841 agctggagag cctgtggtgc cgagaggcag cggctggaga aggagctgct gtcggtccgg
      901 ggggcgccca gccgagctct ggccgagaga ttgaaattgg aagagcgaag gaaagagctg
      961 ctacagaaac ttgaagaaac tactaaatta actacatatt tgcattcaca acttaaaaac
     1021 ctctccgcca gcacgctgtc catgtcgtcc gggagcagcc tgggctcgct ggcctccagc
     1081 cgggggtctc tgaacacgtc cagcagaggg tccctcaact ccctcagttc cagcgagctc
     1141 tactacacca gtcagggcga ccagctggac ccggattatc agtataaact ggacttcctc
     1201 ctgcaggaga aaggtggcta cattccttcc ggacccatca ccaccatcca cgaacacgaa
     1261 gtggccaagt cccccagcca gcctggccgg agcggtccct gtgtggcagc ggccgcggcc
     1321 ccgggccgcg cccccgccct gcccgaggcc cccacgtccg tggcgtccct gtcctcccgg
     1381 tcctcccttt cctccctgtc cccaccgggc tctcccttgg tctcagaagg cacgttcccc
     1441 ctgtctcccc acgacgtcgt ccctctccat cacttctctg ctgaccttga ggactgtgaa
     1501 ttgagcagcc actttgcaga cattggcctc ggagacgatc agccgttgct ggactctgac
     1561 ccgggaggag cgcccccgtc tctctcagag gataaggacc tcaccgaacg caccagggcg
     1621 ctgccgcatg aagggcctgc agatgtggaa aaatcattac caaaaagaag aggaatccac
     1681 ttgcttgggg agaaaaccac ttgcgtgtcg gctgcggtct cggatgagtc cgtggccggg
     1741 gacagcgggg tctacgaagc tttcgtgaaa cagcccagtg aagtcgaaga tgtcctgtac
     1801 agtgaggagg acgtcgccgt cacggagacg gcccaggtgc agatcggact cagatatgat
     1861 gcaaaaaggt caagtttcat ggtgattgta gcacaactcc gaaatcttca cgccttcctg
     1921 atacctcaca cttcaaaagt atactttaga gttgctctgc ttccttcctc aactgatgtc
     1981 agctgtctgt ttcgaacgaa agtccatcca gccgcggagt ccctgttatt cggtgatgtg
     2041 ttcagagtgg ccatctccca gacagccctg cagcagaaga cgctgagggt ggatctgtgc
     2101 tctgtcagta aacaccaaag ggaagagtgc ctggcgggaa ctcagatcag cctggcagat
     2161 ttaccctttt ccaatgagat tttcactctg tggtataact tgcttccttc aaagcaaatg
     2221 ccgtgcaaaa agaacgaaga tgaaactgag gattcagtat ttcaaccaag ccagccacta
     2281 gtcgattcta tagatttgga tgcagtgtca gccttacttg caagaacatc agctgagctg
     2341 ttggctgtgg aacaagaatt agcacaagaa gaagaagaac cagagcagga ggaagagcaa
     2401 aggggtccag atggagattg gttaaccatg cagagagagg cctctgatga aattgtggct
     2461 gaggaagggg ctgaagtgaa attggcagag ggcagttgct gtgcagacga cgtaagctca
     2521 cgcccgagtg tgcctgagat gcatgaggac acaagtaaga cagaaaacaa ctgtgccaac
     2581 gaccttggga gtcagccacc tgcaggagtg cctgccctgg ttgataaaga gacaaatacc
     2641 gacgaggcgg gcagtgccgg tgtggcggtc cgccccaaag accgcagcgg cctgagcgcc
     2701 cggcagcgcc ccttcgtgcg gagcagcgtg attgtgcgct cgcagacctt ctcccccggc
     2761 gagcggagcc agtacgtctg caggttaaat cgaagtgaca gtgacagttc aaccctggct
     2821 aaaaaatcac tatttgtgag aaactccact gaacggcgaa gtttgagagt caaaaggacg
     2881 gtgtgccagc cggtgctcag aagggcagca cccgaatgcc ccgtgagaac ctctctggac
     2941 ctggagctgg acctgcaggc ctcgctgacc cggcagagcc gcctgaacga cgagctgcag
     3001 gctctgcggg gcctgaggca gaagctcgag gacctgaaag cccagggcga gacggacctt
     3061 ccgccgggtg tgctggagga tgagaggttc cagaagcttc tgcgacaggc cgagaagcag
     3121 gctgaacagt ccaaagaaga gcagaagcaa gacctgagcg cagagaagct aatgaggcag
     3181 gtgtccaagg acgtgtgccg gcttcgggag cagagccgga aggtgccccg gcaggtgcag
     3241 tccttcaggg agaagatcgc ctacttcacc agagcaaaga taagcatccc gtcgctgccg
     3301 gctgatgacg tctgattaca tcgctgacga gatcgtgttt tcacctcttc atttcttagg
     3361 gagggcaaaa gactgaacgt tttcttgttt ggggttttgt tttttgtttt tggggggttt
     3421 ttgtaatata actgtcaatt cttaaagagg ttttatttca catcagattt tcaacatgtt
     3481 aatttgtaaa gtaccttgaa tgtaattctt acatgtttaa aaaagaaaaa aaaaaatcag
     3541 ataaccaaaa caggatcatc tggtacacag atgtacagta tacgcgtatt gccaatgggc
     3601 tttatttgat aaacatggaa tagaggcggg acccagcgcg tatcctatca aagcggctgt
     3661 ggagagatag ctgagcagcg tgcggttttc gcttttcctt gttttcgcat gggtgactat
     3721 gaagccggca gtggcgccag gtgatacttg gtgctagagg gcagctcgtt cggcgtgagg
     3781 tcgaacttga gcgtgagctt cagtgcagag tgccgggtcc acctgaaaca ggtgctgcgt
     3841 tcatttccat cacctctgtc ggaacacttt gtttccttaa aacagctgcc tttttttgtc
     3901 cttttctatt tgtctaaaga aaacaaaaac aaaatgctga gtgcaggaag gcaagaatgc
     3961 aaaggagcag tgctccagcc acactacaga ccccgtgatt taggacttta agggtaggga
     4021 gatgaaagca gaaagccagt ccgcctcaaa tacactaaaa tcagcacgtc ggtgagcagc
     4081 tgctgcttct cactcagcct ggttgtgcgt cagtgttcag acgtgagtgt ctggcttgca
     4141 ccagtcatgc ttcgtcctag gtgtgaggat ggtaccaggt gggtgaaggt aggggcccag
     4201 ggtgctgagg acacacagtg ctggtactgt ggagggaaac acattaacat cacttgctga
     4261 aaccaggaac agaggaaagg gtacctcgat tgaatcaaga ttgccaaaaa attttaaaat
     4321 acttcagtaa acagatctct aacatttact agaaattact ttgcagctgt cacttttagg
     4381 gaatcctatc tgtaacttgt ggtaaggagt tgggaggcaa agagaagaga gtgcctgggg
     4441 agattattaa tttgaagtaa aagctgagtc atttgtaaaa tataaataaa tatatattcc
     4501 agacaaacaa gatggaaact gactcaagtt tcctccagtg gagaatttta gcttacccaa
     4561 cccaagcact tcttaaaaga aacaaatccc caggttagct ctgccagcat aaaaggcttt
     4621 taaaagaaat agttttatgc aaattaaatc atgcatgtta ctgggtctgt aatactggaa
     4681 gaggcaatgt ttggtgagcc atcttatgta acaagtgaaa tcattttttt ttttagagat
     4741 gaaaacatca tcttaaagga atgggcccct taagaaaaag aaacacaagt tctattccta
     4801 agctagaatc ctcgttgtta agaatattta tttgaaagta attacacatg ttttggaagg
     4861 ttcattttat cagaatcaaa attcagatca agccatttct gagcctagaa ctgtaatgac
     4921 tttttcctaa gtgtcccacc atttatatac aaaagtcttt gaaggaataa ctggacgtga
     4981 cactactttg aacaaaaacc agcctcgtga attgactgag cacagtcctt gcaggcggcc
     5041 cagttcatcc tgttaggtga ccaaggagaa ctggaggaag agcaccgttc atccttgtcg
     5101 aggtcaaatg tgaaaaacag aagtttattt aatgtagagt taaatgaagg tcagctgttt
     5161 tcagcttctt agtttgacca tgaaaatgtt tataggatta tgtgtggttg taccgtacaa
     5221 ttttattttc ttcatttatt tatttacggt cttatttatg ttctgtttaa tatatagttc
     5281 ggttctggcc atcttaaatg tttgacacag aagagactat attggaatat ttacagcttt
     5341 ataaattcca tcagattagc tgttaacttt ttgtacgaca aagagtttca gacaagcata
     5401 aaagaataaa atctgtctca ggctggtagt tagcagttgt gaccaagatg cttttggttt
     5461 tattttacag catttgctca tttctaacat gagagacaaa cttaatataa tcctttttca
     5521 ctctttaaaa atcagcaata gtgttatgta tttataggca gcttttaaca atcctgtcat
     5581 atttgtacta acccaaatga ttcacagtga caaaacattt taataacttg ctcacaaaac
     5641 catatggaca acatgaattt taatattata agtactattt tttaaaggta gaatttattc
     5701 ttcacagggt aaaaagaatg taatatttag ttctcaagtt tgaattatca gtatgttatt
     5761 acaattttgt atatcagaat ctaagtgtta caggtacaaa aagaatattg ctagccaaat
     5821 gaacaaagtt tagctggatc tctgtagcat gcaaatcaaa taaatttaaa atcttttttt
     5881 gctattactt tatattgtat taaatatcaa aagctcagga ctgaactaaa tatttaatca
     5941 ggttaaattc tgaatatgtt tctgttttaa tttgtctttt ttgtaaaagt atgcaaatac
     6001 atcacataga ttaactctgg tttctgcact tttcatgtgt ttgtgggtgg aaaaaaattc
     6061 agtgttttct ttttaaaaca aagatacata ttacctaata
//
LOCUS       XM_032618321            2642 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X1, mRNA.
ACCESSION   XM_032618321
VERSION     XM_032618321.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2642
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746713"
     CDS             197..2410
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X1"
                     /protein_id="XP_032474212.1"
                     /db_xref="GeneID:116746713"
                     /translation="MSAQGDCEFLVQRARELVQQDLWAAKAWLITARSLYPADFNIQY
                     EMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSL
                     FETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETI
                     EEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIES
                     QHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCDWQMDK
                     GRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLF
                     QGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMQSSDDEDCSAKG
                     RNRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLR
                     IFLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQLATCHFALG
                     EYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAIMPYCL
                     HLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQGNFQYENFF
                     NYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKPSSPPMGLLQQEFLPVLQPSIQ
                     TADRHHTVTRGITKGVKEDFRLAMERQVSRCGENLTLVLHRFCVNEKILLLQTLA"
ORIGIN      
        1 ggccgggagg aggctactcg caaagcccgg aagccctccc ggatccaccc tgcggtggct
       61 gcgcgacccc ggacttgcgc agtagcgtcc gcggcggcgg cggcggcgga ggcggcacgg
      121 tccgcggcgg cgaggttcgc ggcgtccccc agtcggaagg tccggcagcc tcaggccgcc
      181 cgaggcctcc cgcgtcatgt cggcccaggg cgactgcgag ttcctggtgc agcgagcccg
      241 cgagctggtg cagcaggacc tgtgggccgc caaggcttgg ctgatcacgg cccgcagcct
      301 ctaccccgca gacttcaaca tccagtatga gatgtacacc atcgagcgga acgcggagcg
      361 gacggccacc gccgggaggc tgctctacga catgtttgtg aatttcccag atcagcccgt
      421 ggtgtggaga gaaatcagca ttattacatc agcattaaga aacgattcac aggataaaca
      481 aacgcaattt ttaagaagtt tatttgaaac tcttcctggt cgggtccagt gtgaaatgtt
      541 actaaaggtt acggaacaat gcttcaacac tttggaacga tcagaaatgt tgcttctact
      601 tttgagacga ttccctgaaa cggtggtaca gcacggggtt ggccttgggg aggcactatt
      661 ggaggctgaa actattgaag agcaagaatc tcctgttaac tgctttagaa aattatttgt
      721 gtgtgatgtc cttcctctaa taattaacaa ccatgatgtt cggttgcccg ccaatttgtt
      781 gtataagtac ttgaacaaag cagctgaatt ttatatcaat tatgtcacta ggtctactca
      841 aatagagagt cagcatcaag gtacccaaga aacgtctgat ttaatgtcac caagcaaacg
      901 tagctctcag aagtacataa ttgaggggct gactgaaaaa tcatcccaga tcgtggaccc
      961 ttgggagagg ttgtttaaga ttttgaatgt tgttggaatg agatgtgact ggcagatgga
     1021 taaaggaaga cgaagctatg gtgatatttt gcatagaatg aaggatctct gcagatacat
     1081 gaacaacttt gataacgaag ctcatgcaaa atataaaaac caagtggttt attccactat
     1141 gttggtcttc tttaagaatg catttcagta tgtcaacagc atacagccgt ctctattcca
     1201 aggtcctaat gcccctagcc aagttccact ggttcttctg gaggacatat caaatgtata
     1261 cggtgatgta gagattgatc gcaataaaca catacataaa aagaggaaac tagctgaggg
     1321 aagagaaaaa accatgcaga gttcagacga tgaagactgt tcagcaaaag gaaggaatcg
     1381 tcacatcatt gtcaataagg cagaacttgc taactccgtc gaggtgttag aaagctttaa
     1441 gctggccaga gagagctggg agctcctcta ttccctggaa ttccttgaca aggaatttac
     1501 aagaatttgt ttggcgtgga agacggatac ttggctttgg ttgagaatct tcctcaacga
     1561 tgtgatcatc tatcagggtc aatataaaaa ggccatagcc agcctgcacc acttggcagc
     1621 tctccaggga ccgcttcctc agccacagat ctcgggacag gggaccttgg agcatcagag
     1681 ggcgctcatc cagctggcaa cctgccactt tgccttgggg gagtacagaa tgacgtgtga
     1741 aaaagtcctt gatttgatgt gctacatggt cctccccatc caggacggag gcaagtcaca
     1801 ggaagaaccc tcaaaaataa agcccaagtt tagaaaaggt tcagatctga agcttctgcc
     1861 ttgtaccagc aaggctatca tgccctattg cctgcattta atgttagctt gttttaagct
     1921 gagagccttc acggacagca gagacgacat ggcgctgggg cacgtcatcg tgctgcttca
     1981 gcaggagtgg ccgcggggag agaccctttt cttgaaagcc gtcaataaga tttgccagca
     2041 aggaaacttc caatatgaga attttttcaa ttatgttaca aatatcgaca tgctggagga
     2101 gttcgcctac ctgagaactc aggaaggtgg gaagatccat ctggaactcc tgcccaatca
     2161 agggatgctg atcaagcctt ctagccctcc catggggtta ctgcagcagg aattcttacc
     2221 tgtgcttcag cccagcatac agactgctga caggcaccat acggtcaccc ggggcatcac
     2281 caagggcgtg aaggaggact tccgcctggc catggagcgc caggtgtccc gctgtgggga
     2341 gaacttgacg ctggtgctgc acaggttctg cgtcaacgag aagatcttgc tgctccagac
     2401 tctggcctga ccggccctcc cgccagaggc agcccacagc cgcggggctc tggggagaca
     2461 taaagcgcag atgagcgttg ccgtcatcgc tcttcaaaag aggaagacca tcggggtttt
     2521 aactcattgg tcgcttagaa gtagttccca acagtccaag aagctatttc tatttttgtc
     2581 gtattttgta atttttgtaa aacaaaagaa cctgttttgt aaataaaatc atcctaaatt
     2641 tg
//
LOCUS       XM_032618322            2637 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X2, mRNA.
ACCESSION   XM_032618322
VERSION     XM_032618322.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2637
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746713"
     CDS             195..2405
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X2"
                     /protein_id="XP_032474213.1"
                     /db_xref="GeneID:116746713"
                     /translation="MSAQGDCEFLVQRARELVQQDLWAAKAWLITARSLYPADFNIQY
                     EMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSL
                     FETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETI
                     EEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIES
                     QHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCDWQMDK
                     GRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLF
                     QGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMSSDDEDCSAKGR
                     NRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRI
                     FLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQLATCHFALGE
                     YRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAIMPYCLH
                     LMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQGNFQYENFFN
                     YVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKPSSPPMGLLQQEFLPVLQPSIQT
                     ADRHHTVTRGITKGVKEDFRLAMERQVSRCGENLTLVLHRFCVNEKILLLQTLA"
ORIGIN      
        1 ccgggaggag gctactcgca aagcccggaa gccctcccgg atccaccctg cggtggctgc
       61 gcgaccccgg acttgcgcag tagcgtccgc ggcggcggcg gcggcggagg cggcacggtc
      121 cgcggcggcg aggttcgcgg cgtcccccag tcggaaggtc cggcagcctc aggccgcccg
      181 aggcctcccg cgtcatgtcg gcccagggcg actgcgagtt cctggtgcag cgagcccgcg
      241 agctggtgca gcaggacctg tgggccgcca aggcttggct gatcacggcc cgcagcctct
      301 accccgcaga cttcaacatc cagtatgaga tgtacaccat cgagcggaac gcggagcgga
      361 cggccaccgc cgggaggctg ctctacgaca tgtttgtgaa tttcccagat cagcccgtgg
      421 tgtggagaga aatcagcatt attacatcag cattaagaaa cgattcacag gataaacaaa
      481 cgcaattttt aagaagttta tttgaaactc ttcctggtcg ggtccagtgt gaaatgttac
      541 taaaggttac ggaacaatgc ttcaacactt tggaacgatc agaaatgttg cttctacttt
      601 tgagacgatt ccctgaaacg gtggtacagc acggggttgg ccttggggag gcactattgg
      661 aggctgaaac tattgaagag caagaatctc ctgttaactg ctttagaaaa ttatttgtgt
      721 gtgatgtcct tcctctaata attaacaacc atgatgttcg gttgcccgcc aatttgttgt
      781 ataagtactt gaacaaagca gctgaatttt atatcaatta tgtcactagg tctactcaaa
      841 tagagagtca gcatcaaggt acccaagaaa cgtctgattt aatgtcacca agcaaacgta
      901 gctctcagaa gtacataatt gaggggctga ctgaaaaatc atcccagatc gtggaccctt
      961 gggagaggtt gtttaagatt ttgaatgttg ttggaatgag atgtgactgg cagatggata
     1021 aaggaagacg aagctatggt gatattttgc atagaatgaa ggatctctgc agatacatga
     1081 acaactttga taacgaagct catgcaaaat ataaaaacca agtggtttat tccactatgt
     1141 tggtcttctt taagaatgca tttcagtatg tcaacagcat acagccgtct ctattccaag
     1201 gtcctaatgc ccctagccaa gttccactgg ttcttctgga ggacatatca aatgtatacg
     1261 gtgatgtaga gattgatcgc aataaacaca tacataaaaa gaggaaacta gctgagggaa
     1321 gagaaaaaac catgagttca gacgatgaag actgttcagc aaaaggaagg aatcgtcaca
     1381 tcattgtcaa taaggcagaa cttgctaact ccgtcgaggt gttagaaagc tttaagctgg
     1441 ccagagagag ctgggagctc ctctattccc tggaattcct tgacaaggaa tttacaagaa
     1501 tttgtttggc gtggaagacg gatacttggc tttggttgag aatcttcctc aacgatgtga
     1561 tcatctatca gggtcaatat aaaaaggcca tagccagcct gcaccacttg gcagctctcc
     1621 agggaccgct tcctcagcca cagatctcgg gacaggggac cttggagcat cagagggcgc
     1681 tcatccagct ggcaacctgc cactttgcct tgggggagta cagaatgacg tgtgaaaaag
     1741 tccttgattt gatgtgctac atggtcctcc ccatccagga cggaggcaag tcacaggaag
     1801 aaccctcaaa aataaagccc aagtttagaa aaggttcaga tctgaagctt ctgccttgta
     1861 ccagcaaggc tatcatgccc tattgcctgc atttaatgtt agcttgtttt aagctgagag
     1921 ccttcacgga cagcagagac gacatggcgc tggggcacgt catcgtgctg cttcagcagg
     1981 agtggccgcg gggagagacc cttttcttga aagccgtcaa taagatttgc cagcaaggaa
     2041 acttccaata tgagaatttt ttcaattatg ttacaaatat cgacatgctg gaggagttcg
     2101 cctacctgag aactcaggaa ggtgggaaga tccatctgga actcctgccc aatcaaggga
     2161 tgctgatcaa gccttctagc cctcccatgg ggttactgca gcaggaattc ttacctgtgc
     2221 ttcagcccag catacagact gctgacaggc accatacggt cacccggggc atcaccaagg
     2281 gcgtgaagga ggacttccgc ctggccatgg agcgccaggt gtcccgctgt ggggagaact
     2341 tgacgctggt gctgcacagg ttctgcgtca acgagaagat cttgctgctc cagactctgg
     2401 cctgaccggc cctcccgcca gaggcagccc acagccgcgg ggctctgggg agacataaag
     2461 cgcagatgag cgttgccgtc atcgctcttc aaaagaggaa gaccatcggg gttttaactc
     2521 attggtcgct tagaagtagt tcccaacagt ccaagaagct atttctattt ttgtcgtatt
     2581 ttgtaatttt tgtaaaacaa aagaacctgt tttgtaaata aaatcatcct aaatttg
//
LOCUS       XM_032618323            2563 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X3, mRNA.
ACCESSION   XM_032618323
VERSION     XM_032618323.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2563
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746713"
     CDS             196..2331
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X3"
                     /protein_id="XP_032474214.1"
                     /db_xref="GeneID:116746713"
                     /translation="MSAQGDCEFLVQRARELVQQDLWAAKAWLITARSLYPADFNIQY
                     EMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSL
                     FETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETI
                     EEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIES
                     QHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCDWQMDK
                     GRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLF
                     QGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMQSSDDEDCSAKG
                     RNRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLR
                     IFLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQLATCHFALG
                     EYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAIMPYCL
                     HLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQGNFQYENFF
                     NYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMER
                     QVSRCGENLTLVLHRFCVNEKILLLQTLA"
ORIGIN      
        1 gccgggagga ggctactcgc aaagcccgga agccctcccg gatccaccct gcggtggctg
       61 cgcgaccccg gacttgcgca gtagcgtccg cggcggcggc ggcggcggag gcggcacggt
      121 ccgcggcggc gaggttcgcg gcgtccccca gtcggaaggt ccggcagcct caggccgccc
      181 gaggcctccc gcgtcatgtc ggcccagggc gactgcgagt tcctggtgca gcgagcccgc
      241 gagctggtgc agcaggacct gtgggccgcc aaggcttggc tgatcacggc ccgcagcctc
      301 taccccgcag acttcaacat ccagtatgag atgtacacca tcgagcggaa cgcggagcgg
      361 acggccaccg ccgggaggct gctctacgac atgtttgtga atttcccaga tcagcccgtg
      421 gtgtggagag aaatcagcat tattacatca gcattaagaa acgattcaca ggataaacaa
      481 acgcaatttt taagaagttt atttgaaact cttcctggtc gggtccagtg tgaaatgtta
      541 ctaaaggtta cggaacaatg cttcaacact ttggaacgat cagaaatgtt gcttctactt
      601 ttgagacgat tccctgaaac ggtggtacag cacggggttg gccttgggga ggcactattg
      661 gaggctgaaa ctattgaaga gcaagaatct cctgttaact gctttagaaa attatttgtg
      721 tgtgatgtcc ttcctctaat aattaacaac catgatgttc ggttgcccgc caatttgttg
      781 tataagtact tgaacaaagc agctgaattt tatatcaatt atgtcactag gtctactcaa
      841 atagagagtc agcatcaagg tacccaagaa acgtctgatt taatgtcacc aagcaaacgt
      901 agctctcaga agtacataat tgaggggctg actgaaaaat catcccagat cgtggaccct
      961 tgggagaggt tgtttaagat tttgaatgtt gttggaatga gatgtgactg gcagatggat
     1021 aaaggaagac gaagctatgg tgatattttg catagaatga aggatctctg cagatacatg
     1081 aacaactttg ataacgaagc tcatgcaaaa tataaaaacc aagtggttta ttccactatg
     1141 ttggtcttct ttaagaatgc atttcagtat gtcaacagca tacagccgtc tctattccaa
     1201 ggtcctaatg cccctagcca agttccactg gttcttctgg aggacatatc aaatgtatac
     1261 ggtgatgtag agattgatcg caataaacac atacataaaa agaggaaact agctgaggga
     1321 agagaaaaaa ccatgcagag ttcagacgat gaagactgtt cagcaaaagg aaggaatcgt
     1381 cacatcattg tcaataaggc agaacttgct aactccgtcg aggtgttaga aagctttaag
     1441 ctggccagag agagctggga gctcctctat tccctggaat tccttgacaa ggaatttaca
     1501 agaatttgtt tggcgtggaa gacggatact tggctttggt tgagaatctt cctcaacgat
     1561 gtgatcatct atcagggtca atataaaaag gccatagcca gcctgcacca cttggcagct
     1621 ctccagggac cgcttcctca gccacagatc tcgggacagg ggaccttgga gcatcagagg
     1681 gcgctcatcc agctggcaac ctgccacttt gccttggggg agtacagaat gacgtgtgaa
     1741 aaagtccttg atttgatgtg ctacatggtc ctccccatcc aggacggagg caagtcacag
     1801 gaagaaccct caaaaataaa gcccaagttt agaaaaggtt cagatctgaa gcttctgcct
     1861 tgtaccagca aggctatcat gccctattgc ctgcatttaa tgttagcttg ttttaagctg
     1921 agagccttca cggacagcag agacgacatg gcgctggggc acgtcatcgt gctgcttcag
     1981 caggagtggc cgcggggaga gacccttttc ttgaaagccg tcaataagat ttgccagcaa
     2041 ggaaacttcc aatatgagaa ttttttcaat tatgttacaa atatcgacat gctggaggag
     2101 ttcgcctacc tgagaactca ggaaggtggg aagatccatc tggaactcct gcccaatcaa
     2161 gggatgctga tcaagcacca tacggtcacc cggggcatca ccaagggcgt gaaggaggac
     2221 ttccgcctgg ccatggagcg ccaggtgtcc cgctgtgggg agaacttgac gctggtgctg
     2281 cacaggttct gcgtcaacga gaagatcttg ctgctccaga ctctggcctg accggccctc
     2341 ccgccagagg cagcccacag ccgcggggct ctggggagac ataaagcgca gatgagcgtt
     2401 gccgtcatcg ctcttcaaaa gaggaagacc atcggggttt taactcattg gtcgcttaga
     2461 agtagttccc aacagtccaa gaagctattt ctatttttgt cgtattttgt aatttttgta
     2521 aaacaaaaga acctgttttg taaataaaat catcctaaat ttg
//
LOCUS       XM_032618324            2558 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X4, mRNA.
ACCESSION   XM_032618324
VERSION     XM_032618324.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2558
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 4 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746713"
     CDS             194..2326
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X4"
                     /protein_id="XP_032474215.1"
                     /db_xref="GeneID:116746713"
                     /translation="MSAQGDCEFLVQRARELVQQDLWAAKAWLITARSLYPADFNIQY
                     EMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSL
                     FETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETI
                     EEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIES
                     QHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCDWQMDK
                     GRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLF
                     QGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMSSDDEDCSAKGR
                     NRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRI
                     FLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQLATCHFALGE
                     YRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAIMPYCLH
                     LMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQGNFQYENFFN
                     YVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQ
                     VSRCGENLTLVLHRFCVNEKILLLQTLA"
ORIGIN      
        1 cgggaggagg ctactcgcaa agcccggaag ccctcccgga tccaccctgc ggtggctgcg
       61 cgaccccgga cttgcgcagt agcgtccgcg gcggcggcgg cggcggaggc ggcacggtcc
      121 gcggcggcga ggttcgcggc gtcccccagt cggaaggtcc ggcagcctca ggccgcccga
      181 ggcctcccgc gtcatgtcgg cccagggcga ctgcgagttc ctggtgcagc gagcccgcga
      241 gctggtgcag caggacctgt gggccgccaa ggcttggctg atcacggccc gcagcctcta
      301 ccccgcagac ttcaacatcc agtatgagat gtacaccatc gagcggaacg cggagcggac
      361 ggccaccgcc gggaggctgc tctacgacat gtttgtgaat ttcccagatc agcccgtggt
      421 gtggagagaa atcagcatta ttacatcagc attaagaaac gattcacagg ataaacaaac
      481 gcaattttta agaagtttat ttgaaactct tcctggtcgg gtccagtgtg aaatgttact
      541 aaaggttacg gaacaatgct tcaacacttt ggaacgatca gaaatgttgc ttctactttt
      601 gagacgattc cctgaaacgg tggtacagca cggggttggc cttggggagg cactattgga
      661 ggctgaaact attgaagagc aagaatctcc tgttaactgc tttagaaaat tatttgtgtg
      721 tgatgtcctt cctctaataa ttaacaacca tgatgttcgg ttgcccgcca atttgttgta
      781 taagtacttg aacaaagcag ctgaatttta tatcaattat gtcactaggt ctactcaaat
      841 agagagtcag catcaaggta cccaagaaac gtctgattta atgtcaccaa gcaaacgtag
      901 ctctcagaag tacataattg aggggctgac tgaaaaatca tcccagatcg tggacccttg
      961 ggagaggttg tttaagattt tgaatgttgt tggaatgaga tgtgactggc agatggataa
     1021 aggaagacga agctatggtg atattttgca tagaatgaag gatctctgca gatacatgaa
     1081 caactttgat aacgaagctc atgcaaaata taaaaaccaa gtggtttatt ccactatgtt
     1141 ggtcttcttt aagaatgcat ttcagtatgt caacagcata cagccgtctc tattccaagg
     1201 tcctaatgcc cctagccaag ttccactggt tcttctggag gacatatcaa atgtatacgg
     1261 tgatgtagag attgatcgca ataaacacat acataaaaag aggaaactag ctgagggaag
     1321 agaaaaaacc atgagttcag acgatgaaga ctgttcagca aaaggaagga atcgtcacat
     1381 cattgtcaat aaggcagaac ttgctaactc cgtcgaggtg ttagaaagct ttaagctggc
     1441 cagagagagc tgggagctcc tctattccct ggaattcctt gacaaggaat ttacaagaat
     1501 ttgtttggcg tggaagacgg atacttggct ttggttgaga atcttcctca acgatgtgat
     1561 catctatcag ggtcaatata aaaaggccat agccagcctg caccacttgg cagctctcca
     1621 gggaccgctt cctcagccac agatctcggg acaggggacc ttggagcatc agagggcgct
     1681 catccagctg gcaacctgcc actttgcctt gggggagtac agaatgacgt gtgaaaaagt
     1741 ccttgatttg atgtgctaca tggtcctccc catccaggac ggaggcaagt cacaggaaga
     1801 accctcaaaa ataaagccca agtttagaaa aggttcagat ctgaagcttc tgccttgtac
     1861 cagcaaggct atcatgccct attgcctgca tttaatgtta gcttgtttta agctgagagc
     1921 cttcacggac agcagagacg acatggcgct ggggcacgtc atcgtgctgc ttcagcagga
     1981 gtggccgcgg ggagagaccc ttttcttgaa agccgtcaat aagatttgcc agcaaggaaa
     2041 cttccaatat gagaattttt tcaattatgt tacaaatatc gacatgctgg aggagttcgc
     2101 ctacctgaga actcaggaag gtgggaagat ccatctggaa ctcctgccca atcaagggat
     2161 gctgatcaag caccatacgg tcacccgggg catcaccaag ggcgtgaagg aggacttccg
     2221 cctggccatg gagcgccagg tgtcccgctg tggggagaac ttgacgctgg tgctgcacag
     2281 gttctgcgtc aacgagaaga tcttgctgct ccagactctg gcctgaccgg ccctcccgcc
     2341 agaggcagcc cacagccgcg gggctctggg gagacataaa gcgcagatga gcgttgccgt
     2401 catcgctctt caaaagagga agaccatcgg ggttttaact cattggtcgc ttagaagtag
     2461 ttcccaacag tccaagaagc tatttctatt tttgtcgtat tttgtaattt ttgtaaaaca
     2521 aaagaacctg ttttgtaaat aaaatcatcc taaatttg
//
LOCUS       XM_032618325            2437 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X5, mRNA.
ACCESSION   XM_032618325
VERSION     XM_032618325.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2437
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746713"
     CDS             139..2205
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X5"
                     /protein_id="XP_032474216.1"
                     /db_xref="GeneID:116746713"
                     /translation="MRCTPSSGTRSGRPPPGGCSTTYQPVVWREISIITSALRNDSQD
                     KQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLG
                     EALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINY
                     VTRSTQIESQHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVG
                     MRCDWQMDKGRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQY
                     VNSIQPSLFQGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMQSS
                     DDEDCSAKGRNRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAW
                     KTDTWLWLRIFLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQ
                     LATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCT
                     SKAIMPYCLHLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQ
                     GNFQYENFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKPSSPPMGLLQQEF
                     LPVLQPSIQTADRHHTVTRGITKGVKEDFRLAMERQVSRCGENLTLVLHRFCVNEKIL
                     LLQTLA"
ORIGIN      
        1 cccgcgtcat gtcggcccag ggcgactgcg agttcctggt gcagcgagcc cgcgagctgg
       61 tgcagcagga cctgtgggcc gccaaggctt ggctgatcac ggcccgcagc ctctaccccg
      121 cagacttcaa catccagtat gagatgtaca ccatcgagcg gaacgcggag cggacggcca
      181 ccgccgggag gctgctctac gacatatcag cccgtggtgt ggagagaaat cagcattatt
      241 acatcagcat taagaaacga ttcacaggat aaacaaacgc aatttttaag aagtttattt
      301 gaaactcttc ctggtcgggt ccagtgtgaa atgttactaa aggttacgga acaatgcttc
      361 aacactttgg aacgatcaga aatgttgctt ctacttttga gacgattccc tgaaacggtg
      421 gtacagcacg gggttggcct tggggaggca ctattggagg ctgaaactat tgaagagcaa
      481 gaatctcctg ttaactgctt tagaaaatta tttgtgtgtg atgtccttcc tctaataatt
      541 aacaaccatg atgttcggtt gcccgccaat ttgttgtata agtacttgaa caaagcagct
      601 gaattttata tcaattatgt cactaggtct actcaaatag agagtcagca tcaaggtacc
      661 caagaaacgt ctgatttaat gtcaccaagc aaacgtagct ctcagaagta cataattgag
      721 gggctgactg aaaaatcatc ccagatcgtg gacccttggg agaggttgtt taagattttg
      781 aatgttgttg gaatgagatg tgactggcag atggataaag gaagacgaag ctatggtgat
      841 attttgcata gaatgaagga tctctgcaga tacatgaaca actttgataa cgaagctcat
      901 gcaaaatata aaaaccaagt ggtttattcc actatgttgg tcttctttaa gaatgcattt
      961 cagtatgtca acagcataca gccgtctcta ttccaaggtc ctaatgcccc tagccaagtt
     1021 ccactggttc ttctggagga catatcaaat gtatacggtg atgtagagat tgatcgcaat
     1081 aaacacatac ataaaaagag gaaactagct gagggaagag aaaaaaccat gcagagttca
     1141 gacgatgaag actgttcagc aaaaggaagg aatcgtcaca tcattgtcaa taaggcagaa
     1201 cttgctaact ccgtcgaggt gttagaaagc tttaagctgg ccagagagag ctgggagctc
     1261 ctctattccc tggaattcct tgacaaggaa tttacaagaa tttgtttggc gtggaagacg
     1321 gatacttggc tttggttgag aatcttcctc aacgatgtga tcatctatca gggtcaatat
     1381 aaaaaggcca tagccagcct gcaccacttg gcagctctcc agggaccgct tcctcagcca
     1441 cagatctcgg gacaggggac cttggagcat cagagggcgc tcatccagct ggcaacctgc
     1501 cactttgcct tgggggagta cagaatgacg tgtgaaaaag tccttgattt gatgtgctac
     1561 atggtcctcc ccatccagga cggaggcaag tcacaggaag aaccctcaaa aataaagccc
     1621 aagtttagaa aaggttcaga tctgaagctt ctgccttgta ccagcaaggc tatcatgccc
     1681 tattgcctgc atttaatgtt agcttgtttt aagctgagag ccttcacgga cagcagagac
     1741 gacatggcgc tggggcacgt catcgtgctg cttcagcagg agtggccgcg gggagagacc
     1801 cttttcttga aagccgtcaa taagatttgc cagcaaggaa acttccaata tgagaatttt
     1861 ttcaattatg ttacaaatat cgacatgctg gaggagttcg cctacctgag aactcaggaa
     1921 ggtgggaaga tccatctgga actcctgccc aatcaaggga tgctgatcaa gccttctagc
     1981 cctcccatgg ggttactgca gcaggaattc ttacctgtgc ttcagcccag catacagact
     2041 gctgacaggc accatacggt cacccggggc atcaccaagg gcgtgaagga ggacttccgc
     2101 ctggccatgg agcgccaggt gtcccgctgt ggggagaact tgacgctggt gctgcacagg
     2161 ttctgcgtca acgagaagat cttgctgctc cagactctgg cctgaccggc cctcccgcca
     2221 gaggcagccc acagccgcgg ggctctgggg agacataaag cgcagatgag cgttgccgtc
     2281 atcgctcttc aaaagaggaa gaccatcggg gttttaactc attggtcgct tagaagtagt
     2341 tcccaacagt ccaagaagct atttctattt ttgtcgtatt ttgtaatttt tgtaaaacaa
     2401 aagaacctgt tttgtaaata aaatcatcct aaatttg
//
LOCUS       XM_032618327            2239 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X6, mRNA.
ACCESSION   XM_032618327
VERSION     XM_032618327.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2239
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116746713"
     CDS             198..2102
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X6"
                     /protein_id="XP_032474218.1"
                     /db_xref="GeneID:116746713"
                     /translation="MSAQGDCEFLVQRARELVQQDLWAAKAWLITARSLYPADFNIQY
                     EMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSL
                     FETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETI
                     EEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIES
                     QHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCDWQMDK
                     GRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLF
                     QGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMQSSDDEDCSAKG
                     RNRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLR
                     IFLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQLATCHFALG
                     EYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAIMPYCL
                     HLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQGNFQYENFF
                     NYVTSILFLV"
ORIGIN      
        1 tggccgggag gaggctactc gcaaagcccg gaagccctcc cggatccacc ctgcggtggc
       61 tgcgcgaccc cggacttgcg cagtagcgtc cgcggcggcg gcggcggcgg aggcggcacg
      121 gtccgcggcg gcgaggttcg cggcgtcccc cagtcggaag gtccggcagc ctcaggccgc
      181 ccgaggcctc ccgcgtcatg tcggcccagg gcgactgcga gttcctggtg cagcgagccc
      241 gcgagctggt gcagcaggac ctgtgggccg ccaaggcttg gctgatcacg gcccgcagcc
      301 tctaccccgc agacttcaac atccagtatg agatgtacac catcgagcgg aacgcggagc
      361 ggacggccac cgccgggagg ctgctctacg acatgtttgt gaatttccca gatcagcccg
      421 tggtgtggag agaaatcagc attattacat cagcattaag aaacgattca caggataaac
      481 aaacgcaatt tttaagaagt ttatttgaaa ctcttcctgg tcgggtccag tgtgaaatgt
      541 tactaaaggt tacggaacaa tgcttcaaca ctttggaacg atcagaaatg ttgcttctac
      601 ttttgagacg attccctgaa acggtggtac agcacggggt tggccttggg gaggcactat
      661 tggaggctga aactattgaa gagcaagaat ctcctgttaa ctgctttaga aaattatttg
      721 tgtgtgatgt ccttcctcta ataattaaca accatgatgt tcggttgccc gccaatttgt
      781 tgtataagta cttgaacaaa gcagctgaat tttatatcaa ttatgtcact aggtctactc
      841 aaatagagag tcagcatcaa ggtacccaag aaacgtctga tttaatgtca ccaagcaaac
      901 gtagctctca gaagtacata attgaggggc tgactgaaaa atcatcccag atcgtggacc
      961 cttgggagag gttgtttaag attttgaatg ttgttggaat gagatgtgac tggcagatgg
     1021 ataaaggaag acgaagctat ggtgatattt tgcatagaat gaaggatctc tgcagataca
     1081 tgaacaactt tgataacgaa gctcatgcaa aatataaaaa ccaagtggtt tattccacta
     1141 tgttggtctt ctttaagaat gcatttcagt atgtcaacag catacagccg tctctattcc
     1201 aaggtcctaa tgcccctagc caagttccac tggttcttct ggaggacata tcaaatgtat
     1261 acggtgatgt agagattgat cgcaataaac acatacataa aaagaggaaa ctagctgagg
     1321 gaagagaaaa aaccatgcag agttcagacg atgaagactg ttcagcaaaa ggaaggaatc
     1381 gtcacatcat tgtcaataag gcagaacttg ctaactccgt cgaggtgtta gaaagcttta
     1441 agctggccag agagagctgg gagctcctct attccctgga attccttgac aaggaattta
     1501 caagaatttg tttggcgtgg aagacggata cttggctttg gttgagaatc ttcctcaacg
     1561 atgtgatcat ctatcagggt caatataaaa aggccatagc cagcctgcac cacttggcag
     1621 ctctccaggg accgcttcct cagccacaga tctcgggaca ggggaccttg gagcatcaga
     1681 gggcgctcat ccagctggca acctgccact ttgccttggg ggagtacaga atgacgtgtg
     1741 aaaaagtcct tgatttgatg tgctacatgg tcctccccat ccaggacgga ggcaagtcac
     1801 aggaagaacc ctcaaaaata aagcccaagt ttagaaaagg ttcagatctg aagcttctgc
     1861 cttgtaccag caaggctatc atgccctatt gcctgcattt aatgttagct tgttttaagc
     1921 tgagagcctt cacggacagc agagacgaca tggcgctggg gcacgtcatc gtgctgcttc
     1981 agcaggagtg gccgcgggga gagacccttt tcttgaaagc cgtcaataag atttgccagc
     2041 aaggaaactt ccaatatgag aattttttca attatgttac aagtatcctt tttcttgttt
     2101 gagcagaaga aatgcttggc accatacggt cacccggggc atcaccaagg gcgtgaagga
     2161 ggacttccgc ctggccatgg agcgccaggt gtcccgctgt ggggagaact tgacgctggt
     2221 gctgcacagg ttctgcgtc
//
LOCUS       XM_032618328            2384 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X7, mRNA.
ACCESSION   XM_032618328
VERSION     XM_032618328.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2384
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746713"
     CDS             278..2152
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X7"
                     /protein_id="XP_032474219.1"
                     /db_xref="GeneID:116746713"
                     /translation="MLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEA
                     ETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQ
                     IESQHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCDWQ
                     MDKGRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQP
                     SLFQGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMQSSDDEDCS
                     AKGRNRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWL
                     WLRIFLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQLATCHF
                     ALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAIMP
                     YCLHLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQGNFQYE
                     NFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKPSSPPMGLLQQEFLPVLQP
                     SIQTADRHHTVTRGITKGVKEDFRLAMERQVSRCGENLTLVLHRFCVNEKILLLQTLA
                     "
ORIGIN      
        1 cgcgtcatgt cggcccaggg cgactgcgag ttcctggtgc agcgagcccg cgagctggtg
       61 cagcaggacc tgtgggccgc caaggcttgg ctgatcacgg cccgcagcct ctaccccgca
      121 gacttcaaca tccaggtttg tgaatttccc agatcagccc gtggtgtgga gagaaatcag
      181 cattattaca tcagcattaa gaaacgattc acaggataaa caaacgcaat ttttaagaag
      241 tttatttgaa actcttcctg gtcgggtcca gtgtgaaatg ttactaaagg ttacggaaca
      301 atgcttcaac actttggaac gatcagaaat gttgcttcta cttttgagac gattccctga
      361 aacggtggta cagcacgggg ttggccttgg ggaggcacta ttggaggctg aaactattga
      421 agagcaagaa tctcctgtta actgctttag aaaattattt gtgtgtgatg tccttcctct
      481 aataattaac aaccatgatg ttcggttgcc cgccaatttg ttgtataagt acttgaacaa
      541 agcagctgaa ttttatatca attatgtcac taggtctact caaatagaga gtcagcatca
      601 aggtacccaa gaaacgtctg atttaatgtc accaagcaaa cgtagctctc agaagtacat
      661 aattgagggg ctgactgaaa aatcatccca gatcgtggac ccttgggaga ggttgtttaa
      721 gattttgaat gttgttggaa tgagatgtga ctggcagatg gataaaggaa gacgaagcta
      781 tggtgatatt ttgcatagaa tgaaggatct ctgcagatac atgaacaact ttgataacga
      841 agctcatgca aaatataaaa accaagtggt ttattccact atgttggtct tctttaagaa
      901 tgcatttcag tatgtcaaca gcatacagcc gtctctattc caaggtccta atgcccctag
      961 ccaagttcca ctggttcttc tggaggacat atcaaatgta tacggtgatg tagagattga
     1021 tcgcaataaa cacatacata aaaagaggaa actagctgag ggaagagaaa aaaccatgca
     1081 gagttcagac gatgaagact gttcagcaaa aggaaggaat cgtcacatca ttgtcaataa
     1141 ggcagaactt gctaactccg tcgaggtgtt agaaagcttt aagctggcca gagagagctg
     1201 ggagctcctc tattccctgg aattccttga caaggaattt acaagaattt gtttggcgtg
     1261 gaagacggat acttggcttt ggttgagaat cttcctcaac gatgtgatca tctatcaggg
     1321 tcaatataaa aaggccatag ccagcctgca ccacttggca gctctccagg gaccgcttcc
     1381 tcagccacag atctcgggac aggggacctt ggagcatcag agggcgctca tccagctggc
     1441 aacctgccac tttgccttgg gggagtacag aatgacgtgt gaaaaagtcc ttgatttgat
     1501 gtgctacatg gtcctcccca tccaggacgg aggcaagtca caggaagaac cctcaaaaat
     1561 aaagcccaag tttagaaaag gttcagatct gaagcttctg ccttgtacca gcaaggctat
     1621 catgccctat tgcctgcatt taatgttagc ttgttttaag ctgagagcct tcacggacag
     1681 cagagacgac atggcgctgg ggcacgtcat cgtgctgctt cagcaggagt ggccgcgggg
     1741 agagaccctt ttcttgaaag ccgtcaataa gatttgccag caaggaaact tccaatatga
     1801 gaattttttc aattatgtta caaatatcga catgctggag gagttcgcct acctgagaac
     1861 tcaggaaggt gggaagatcc atctggaact cctgcccaat caagggatgc tgatcaagcc
     1921 ttctagccct cccatggggt tactgcagca ggaattctta cctgtgcttc agcccagcat
     1981 acagactgct gacaggcacc atacggtcac ccggggcatc accaagggcg tgaaggagga
     2041 cttccgcctg gccatggagc gccaggtgtc ccgctgtggg gagaacttga cgctggtgct
     2101 gcacaggttc tgcgtcaacg agaagatctt gctgctccag actctggcct gaccggccct
     2161 cccgccagag gcagcccaca gccgcggggc tctggggaga cataaagcgc agatgagcgt
     2221 tgccgtcatc gctcttcaaa agaggaagac catcggggtt ttaactcatt ggtcgcttag
     2281 aagtagttcc caacagtcca agaagctatt tctatttttg tcgtattttg taatttttgt
     2341 aaaacaaaag aacctgtttt gtaaataaaa tcatcctaaa tttg
//
LOCUS       XM_032618329            2493 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X8, mRNA.
ACCESSION   XM_032618329
VERSION     XM_032618329.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2493
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746713"
     CDS             465..2261
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X8"
                     /protein_id="XP_032474220.1"
                     /db_xref="GeneID:116746713"
                     /translation="MLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEA
                     ETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQ
                     IESQHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCDWQ
                     MDKGRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQP
                     SLFQGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMQSSDDEDCS
                     AKGRNRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWL
                     WLRIFLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQLATCHF
                     ALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAIMP
                     YCLHLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQGNFQYE
                     NFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLA
                     MERQVSRCGENLTLVLHRFCVNEKILLLQTLA"
ORIGIN      
        1 cgggaggagg ctactcgcaa agcccggaag ccctcccgga tccaccctgc ggtggctgcg
       61 cgaccccgga cttgcgcagt agcgtccgcg gcggcggcgg cggcggaggc ggcacggtcc
      121 gcggcggcga ggttcgcggc gtcccccagt cggaaggtcc ggcagcctca ggccgcccga
      181 ggcctcccgc gtcatgtcgg cccagggcga ctgcgagttc ctggtgcagc gagcccgcga
      241 gctggtgcag caggacctgt gggccgccaa ggcttggctg atcacggccc gcagcctcta
      301 ccccgcagac ttcaacatcc aggtttgtga atttcccaga tcagcccgtg gtgtggagag
      361 aaatcagcat tattacatca gcattaagaa acgattcaca ggataaacaa acgcaatttt
      421 taagaagttt atttgaaact cttcctggtc gggtccagtg tgaaatgtta ctaaaggtta
      481 cggaacaatg cttcaacact ttggaacgat cagaaatgtt gcttctactt ttgagacgat
      541 tccctgaaac ggtggtacag cacggggttg gccttgggga ggcactattg gaggctgaaa
      601 ctattgaaga gcaagaatct cctgttaact gctttagaaa attatttgtg tgtgatgtcc
      661 ttcctctaat aattaacaac catgatgttc ggttgcccgc caatttgttg tataagtact
      721 tgaacaaagc agctgaattt tatatcaatt atgtcactag gtctactcaa atagagagtc
      781 agcatcaagg tacccaagaa acgtctgatt taatgtcacc aagcaaacgt agctctcaga
      841 agtacataat tgaggggctg actgaaaaat catcccagat cgtggaccct tgggagaggt
      901 tgtttaagat tttgaatgtt gttggaatga gatgtgactg gcagatggat aaaggaagac
      961 gaagctatgg tgatattttg catagaatga aggatctctg cagatacatg aacaactttg
     1021 ataacgaagc tcatgcaaaa tataaaaacc aagtggttta ttccactatg ttggtcttct
     1081 ttaagaatgc atttcagtat gtcaacagca tacagccgtc tctattccaa ggtcctaatg
     1141 cccctagcca agttccactg gttcttctgg aggacatatc aaatgtatac ggtgatgtag
     1201 agattgatcg caataaacac atacataaaa agaggaaact agctgaggga agagaaaaaa
     1261 ccatgcagag ttcagacgat gaagactgtt cagcaaaagg aaggaatcgt cacatcattg
     1321 tcaataaggc agaacttgct aactccgtcg aggtgttaga aagctttaag ctggccagag
     1381 agagctggga gctcctctat tccctggaat tccttgacaa ggaatttaca agaatttgtt
     1441 tggcgtggaa gacggatact tggctttggt tgagaatctt cctcaacgat gtgatcatct
     1501 atcagggtca atataaaaag gccatagcca gcctgcacca cttggcagct ctccagggac
     1561 cgcttcctca gccacagatc tcgggacagg ggaccttgga gcatcagagg gcgctcatcc
     1621 agctggcaac ctgccacttt gccttggggg agtacagaat gacgtgtgaa aaagtccttg
     1681 atttgatgtg ctacatggtc ctccccatcc aggacggagg caagtcacag gaagaaccct
     1741 caaaaataaa gcccaagttt agaaaaggtt cagatctgaa gcttctgcct tgtaccagca
     1801 aggctatcat gccctattgc ctgcatttaa tgttagcttg ttttaagctg agagccttca
     1861 cggacagcag agacgacatg gcgctggggc acgtcatcgt gctgcttcag caggagtggc
     1921 cgcggggaga gacccttttc ttgaaagccg tcaataagat ttgccagcaa ggaaacttcc
     1981 aatatgagaa ttttttcaat tatgttacaa atatcgacat gctggaggag ttcgcctacc
     2041 tgagaactca ggaaggtggg aagatccatc tggaactcct gcccaatcaa gggatgctga
     2101 tcaagcacca tacggtcacc cggggcatca ccaagggcgt gaaggaggac ttccgcctgg
     2161 ccatggagcg ccaggtgtcc cgctgtgggg agaacttgac gctggtgctg cacaggttct
     2221 gcgtcaacga gaagatcttg ctgctccaga ctctggcctg accggccctc ccgccagagg
     2281 cagcccacag ccgcggggct ctggggagac ataaagcgca gatgagcgtt gccgtcatcg
     2341 ctcttcaaaa gaggaagacc atcggggttt taactcattg gtcgcttaga agtagttccc
     2401 aacagtccaa gaagctattt ctatttttgt cgtattttgt aatttttgta aaacaaaaga
     2461 acctgttttg taaataaaat catcctaaat ttg
//
LOCUS       XM_032618330            2487 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus integrator complex subunit 10 (INTS10),
            transcript variant X9, mRNA.
ACCESSION   XM_032618330
VERSION     XM_032618330.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2487
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2487
                     /gene="INTS10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746713"
     CDS             462..2255
                     /gene="INTS10"
                     /codon_start=1
                     /product="integrator complex subunit 10 isoform X9"
                     /protein_id="XP_032474221.1"
                     /db_xref="GeneID:116746713"
                     /translation="MLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEA
                     ETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQ
                     IESQHQGTQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCDWQ
                     MDKGRRSYGDILHRMKDLCRYMNNFDNEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQP
                     SLFQGPNAPSQVPLVLLEDISNVYGDVEIDRNKHIHKKRKLAEGREKTMSSDDEDCSA
                     KGRNRHIIVNKAELANSVEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLW
                     LRIFLNDVIIYQGQYKKAIASLHHLAALQGPLPQPQISGQGTLEHQRALIQLATCHFA
                     LGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAIMPY
                     CLHLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGETLFLKAVNKICQQGNFQYEN
                     FFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAM
                     ERQVSRCGENLTLVLHRFCVNEKILLLQTLA"
ORIGIN      
        1 gaggaggcta ctcgcaaagc ccggaagccc tcccggatcc accctgcggt ggctgcgcga
       61 ccccggactt gcgcagtagc gtccgcggcg gcggcggcgg cggaggcggc acggtccgcg
      121 gcggcgaggt tcgcggcgtc ccccagtcgg aaggtccggc agcctcaggc cgcccgaggc
      181 ctcccgcgtc atgtcggccc agggcgactg cgagttcctg gtgcagcgag cccgcgagct
      241 ggtgcagcag gacctgtggg ccgccaaggc ttggctgatc acggcccgca gcctctaccc
      301 cgcagacttc aacatccagg tttgtgaatt tcccagatca gcccgtggtg tggagagaaa
      361 tcagcattat tacatcagca ttaagaaacg attcacagga taaacaaacg caatttttaa
      421 gaagtttatt tgaaactctt cctggtcggg tccagtgtga aatgttacta aaggttacgg
      481 aacaatgctt caacactttg gaacgatcag aaatgttgct tctacttttg agacgattcc
      541 ctgaaacggt ggtacagcac ggggttggcc ttggggaggc actattggag gctgaaacta
      601 ttgaagagca agaatctcct gttaactgct ttagaaaatt atttgtgtgt gatgtccttc
      661 ctctaataat taacaaccat gatgttcggt tgcccgccaa tttgttgtat aagtacttga
      721 acaaagcagc tgaattttat atcaattatg tcactaggtc tactcaaata gagagtcagc
      781 atcaaggtac ccaagaaacg tctgatttaa tgtcaccaag caaacgtagc tctcagaagt
      841 acataattga ggggctgact gaaaaatcat cccagatcgt ggacccttgg gagaggttgt
      901 ttaagatttt gaatgttgtt ggaatgagat gtgactggca gatggataaa ggaagacgaa
      961 gctatggtga tattttgcat agaatgaagg atctctgcag atacatgaac aactttgata
     1021 acgaagctca tgcaaaatat aaaaaccaag tggtttattc cactatgttg gtcttcttta
     1081 agaatgcatt tcagtatgtc aacagcatac agccgtctct attccaaggt cctaatgccc
     1141 ctagccaagt tccactggtt cttctggagg acatatcaaa tgtatacggt gatgtagaga
     1201 ttgatcgcaa taaacacata cataaaaaga ggaaactagc tgagggaaga gaaaaaacca
     1261 tgagttcaga cgatgaagac tgttcagcaa aaggaaggaa tcgtcacatc attgtcaata
     1321 aggcagaact tgctaactcc gtcgaggtgt tagaaagctt taagctggcc agagagagct
     1381 gggagctcct ctattccctg gaattccttg acaaggaatt tacaagaatt tgtttggcgt
     1441 ggaagacgga tacttggctt tggttgagaa tcttcctcaa cgatgtgatc atctatcagg
     1501 gtcaatataa aaaggccata gccagcctgc accacttggc agctctccag ggaccgcttc
     1561 ctcagccaca gatctcggga caggggacct tggagcatca gagggcgctc atccagctgg
     1621 caacctgcca ctttgccttg ggggagtaca gaatgacgtg tgaaaaagtc cttgatttga
     1681 tgtgctacat ggtcctcccc atccaggacg gaggcaagtc acaggaagaa ccctcaaaaa
     1741 taaagcccaa gtttagaaaa ggttcagatc tgaagcttct gccttgtacc agcaaggcta
     1801 tcatgcccta ttgcctgcat ttaatgttag cttgttttaa gctgagagcc ttcacggaca
     1861 gcagagacga catggcgctg gggcacgtca tcgtgctgct tcagcaggag tggccgcggg
     1921 gagagaccct tttcttgaaa gccgtcaata agatttgcca gcaaggaaac ttccaatatg
     1981 agaatttttt caattatgtt acaaatatcg acatgctgga ggagttcgcc tacctgagaa
     2041 ctcaggaagg tgggaagatc catctggaac tcctgcccaa tcaagggatg ctgatcaagc
     2101 accatacggt cacccggggc atcaccaagg gcgtgaagga ggacttccgc ctggccatgg
     2161 agcgccaggt gtcccgctgt ggggagaact tgacgctggt gctgcacagg ttctgcgtca
     2221 acgagaagat cttgctgctc cagactctgg cctgaccggc cctcccgcca gaggcagccc
     2281 acagccgcgg ggctctgggg agacataaag cgcagatgag cgttgccgtc atcgctcttc
     2341 aaaagaggaa gaccatcggg gttttaactc attggtcgct tagaagtagt tcccaacagt
     2401 ccaagaagct atttctattt ttgtcgtatt ttgtaatttt tgtaaaacaa aagaacctgt
     2461 tttgtaaata aaatcatcct aaatttg
//
LOCUS       XM_032618331            1801 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glutathione-disulfide reductase (GSR),
            mRNA.
ACCESSION   XM_032618331
VERSION     XM_032618331.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1801
                     /gene="GSR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746715"
     CDS             20..1579
                     /gene="GSR"
                     /codon_start=1
                     /product="glutathione reductase, mitochondrial"
                     /protein_id="XP_032474222.1"
                     /db_xref="GeneID:116746715"
                     /translation="MALPARTLSASEGLGWRQAARTFSGYAPPWARAACTFSRAMAFR
                     HGPQSSCPPPAAGVAACYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNV
                     GCVPKKVMWNTAVHSEFMHDHVDYGFQSCEGKFSWRVIKEKRDAYVSRLNTIYQNNLI
                     KSHIEIIRGHAVFTGDAQPTVEVNGEKYTAPHILIATGGVPSLPQESQIPGASLGITS
                     DGFFQLEELPSRSVIVGAGYIAVEIAGILSALGSKTSLIIRHDKVLRSFDSIISSNCT
                     EELENAGIEVLKYSQVKEVKKTSSGLELCMVTSIPGRKPTLTTIPDVDCLLWAIGRDP
                     NSSGLNLNKLGIQTDDKGHILVDEFQNTNVKGVYAVGDVCGKALLTPVAIAAGRKLAH
                     RLFECKEDSKLDYDNIPTVVFSHPPIGTVGLTEDEAIYKYGKENVKIYSTSFTPMYHA
                     VTKRKTKCVMKMVCANKEEKVVGIHMQGIGCDEMLQGFAVAVKMGATKSDFDNTVAIH
                     PTSSEELVTLR"
     misc_feature    203..1576
                     /gene="GSR"
                     /note="glutathione-disulfide reductase, animal/bacterial;
                     Region: gluta_reduc_1; TIGR01421"
                     /db_xref="CDD:273614"
ORIGIN      
        1 ggcgcgcact tccgcgtgca tggccctgcc ggcccggact ctgagcgcga gcgaggggct
       61 cggctggagg caggcggcgc gcactttctc cggctacgcg ccaccttggg cccgggctgc
      121 ctgcaccttc tcccgcgcca tggcgtttag gcacgggccg cagtcttcgt gcccgccgcc
      181 cgccgcaggc gtcgcggcct gctacgacta cctggtgatc gggggcggct cgggcgggct
      241 ggccagcgcg cgccgggcgg ccgagctggg cgcccgggcc gccgtggtgg agagccacaa
      301 gctgggcggc acttgcgtga atgttggatg tgtacccaaa aaggtaatgt ggaacacagc
      361 tgtccactcg gaattcatgc atgaccacgt tgattatggc tttcaaagct gtgagggtaa
      421 attcagctgg cgggttataa aggaaaagcg ggatgcctac gtgagccgcc taaacaccat
      481 ctatcagaat aatctaatca agtcccacat agaaatcatc cgcggccatg cagtattcac
      541 gggtgatgcc cagcccacag tggaggtcaa cggggaaaag tacactgccc ctcacatact
      601 gattgccaca ggtggcgtgc cctcacttcc tcaggagagc cagatccctg gtgccagcct
      661 aggaataacc agtgatgggt tttttcagct ggaagagttg cctagccgca gtgtcatcgt
      721 tggtgctggt tacattgctg tggaaatagc tgggatcctt tctgccctgg gttctaagac
      781 atcactaatc atacggcatg ataaggtgct cagaagtttt gattcaataa tcagttccaa
      841 ctgcactgag gagctggaga acgctggcat agaggtgctg aagtactcgc aggtcaagga
      901 agttaaaaag acttcttcag gcctggaact ctgcatggtc acttcaattc ctggtaggaa
      961 acccaccttg accaccattc cagatgttga ctgtctactc tgggctattg gacgggaccc
     1021 aaactccagc ggcctgaatt taaacaaact ggggattcag actgatgaca aaggtcatat
     1081 cctagtagat gaattccaga atacgaatgt aaaaggtgtc tacgcagttg gggatgtgtg
     1141 tggaaaagct cttcttactc cagttgcgat tgctgctggc cgaaaacttg cccatagact
     1201 ttttgaatgc aaagaagatt ccaagttaga ctatgacaac atccctacgg tggtcttcag
     1261 ccacccccct attgggacag tgggactcac agaagatgag gccatttata aatatggaaa
     1321 agaaaatgtg aagatttatt ccaccagctt taccccaatg tatcatgcag ttaccaaaag
     1381 gaaaacaaaa tgtgtgatga aaatggtttg tgccaacaaa gaggaaaagg tggttgggat
     1441 ccacatgcag ggaattggat gtgatgaaat gctgcagggt tttgcggtcg cagtaaaaat
     1501 gggagcaaca aaatccgact ttgataacac tgttgccatt catcctacct cttcagaaga
     1561 actggtcaca cttcgttgag aacccagaga ctcgtatggc cagcagctgg accactagac
     1621 cttcagaaag gagccaaatc atcacattta cttaccattc ccattgtatg tatttcttta
     1681 ttgtaatcag gatcttccag tagtggaaat tttcagtaaa cttatttatg taattagaaa
     1741 tctgttttgt tatccaggat tgattttcat ttgattacat ctctcaataa ttactatttg
     1801 t
//
LOCUS       XM_032618332            4128 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein O-mannose kinase (POMK),
            transcript variant X1, mRNA.
ACCESSION   XM_032618332
VERSION     XM_032618332.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4128
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4128
                     /gene="POMK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746716"
     CDS             139..1236
                     /gene="POMK"
                     /codon_start=1
                     /product="protein O-mannose kinase isoform X1"
                     /protein_id="XP_032474223.1"
                     /db_xref="GeneID:116746716"
                     /translation="MPRCHRLQELAEASTMETRPQGGRKGPPPRDVPPVVGLLLSMAL
                     MNALLYLCLDWLFISPRRSTEDPTRCPYGHFRMGPTSNCSPWLSCEQLRTEVRQMKRV
                     GEGAVKRVFLSEWKERKVALSRLTRLEVRDDFLHGLRMLKSLQSEHVVTLLGYCEADN
                     SILTEYHPLGSLSSLEATLNLSKYRSTNTWQHRLQLALGYVAIIDFLHRSPLGTLVMC
                     DSSDLPKTLSQYLLTANFSIVLNDLDALPLVNRSTGALVKCGHRELRGDFVAPEQLWP
                     YGEDVPFHDDLMPAYDEKIDIWKIPDVSSFLLGHVEGSDMVRFHLFDIHKACKSQTPA
                     ERPTAQDVLDTYQKVLNLLRDTATSQTREML"
     misc_feature    445..1167
                     /gene="POMK"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(445..453,460..462,466..468,499..501,586..588,
                     628..639,802..804,811..816,829..831,859..864)
                     /gene="POMK"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
ORIGIN      
        1 gcgggccggg ggaggcgtcg gcaggtaggg gcggcgggcg ggcgcggagg tagctgggcc
       61 gcgtcctgcc cggcgcccga gctgggcttg agccgacgga cacgccgccg ggacaggctt
      121 cagctcctgc ctctgttgat gccgcgctgc caccgcctcc aggagctcgc agaagccagc
      181 accatggaga cgaggcccca ggggggcagg aaagggcccc cgcccaggga cgtgccccca
      241 gtggtgggac tgctgctgtc catggccctc atgaacgccc tcctctacct ctgcctcgac
      301 tggctcttca tctcaccccg gcgctccacg gaggacccca cgcgctgtcc ctacggccac
      361 ttccggatgg ggccgacgag caactgctcc ccgtggctgt cctgcgagca gctgaggaca
      421 gaagtgagac agatgaagcg tgtcggggaa ggagccgtga agagagtgtt tctgtccgag
      481 tggaaggaac gcaaggtggc tttgtcgcgg ctcaccaggc tggaggtaag agacgacttc
      541 ctgcacggac tgcggatgct gaagtcgttg cagagtgagc acgtcgtcac gctgctgggc
      601 tactgtgagg ctgacaacag catcctcacc gagtaccacc ccttaggctc cctgagcagc
      661 ctggaggcga cgctgaacct ctccaagtac cggagcacga acacatggca gcacaggctg
      721 cagctggccc tgggctacgt ggccatcatc gacttcctgc accgtagccc cctgggcacg
      781 ctggtcatgt gcgactccag cgacctgccc aagacgctgt cccagtacct gctgaccgcc
      841 aacttcagca tcgtgctcaa cgacctggac gccctgcccc tggtgaaccg cagcaccggg
      901 gccctggtga agtgcggcca ccgggagctt cgcggggact tcgtggcccc agagcagctg
      961 tggccctacg gagaggacgt gccttttcac gacgacctca tgcccgcgta tgacgagaag
     1021 atcgacatct ggaagattcc agacgtctcc agtttccttc tggggcacgt agaagggagc
     1081 gacatggtcc gattccactt gtttgatatt cacaaggcgt gtaagagcca gacgcctgca
     1141 gagagaccca ccgctcagga cgtcctggac acttaccaga aggttttgaa tctactcaga
     1201 gacaccgcga catctcagac aagagagatg ctgtaaaaac cagtgcagtc ggtgaggtat
     1261 gggagtcaag gatcggatgg aagagttaca gtggttccgc tctgatggtg aggtttttgc
     1321 tgctttgacc cgtggttctt ccatccgcgt gcacaagtga gcggctccct atcctggctg
     1381 cctggcagga gttactaagc cagagcaaac cgggcttgat gggagcctgg cttcaggcaa
     1441 aggtgcaaag aagcagcgag tctggccagt atctgaagga agtaacaaaa atggagctac
     1501 aaagaggctt ccctaacacc taaatgtgta agcttgtaag aaatgtgtgt agagatgttt
     1561 ttaaattgca gtgtacagaa gaaacaagca gtagtactcg cttttttagg tgagtattgc
     1621 ggtgtatttc actggtactg atggggcatc tctaccattt caaatgattg ctctgtgaag
     1681 ctcccttgcc attccctttc ccagcgagct tgcacgctct ttgaaatttt gaatggataa
     1741 ggaacattta aaacatcaag tatgatggag attatgttac tgccttggat ggtgcttgtg
     1801 aaattcctac ttaccttcca gctggatttt ctgtgtccaa aattaattat tgtgagcatt
     1861 ttatatcaac agtatctgtc gctcattgct ggaaggtgtc aagcccttcc acttgagttg
     1921 catgattgaa tccttcaaat agctctttcc ttggtcactg tcatccttgt ttgcagggga
     1981 tgatgggttt ggtgcatagt catcatcgcc agtaaggggg ttaaagctga ctgaggggca
     2041 aagatgctgt gcggccgact gcctgcccct ggcttgcaca ggcctcacag tcactggagt
     2101 cacagggagc tgggccctga cccacaggct ctgactcagt ctgtctgggt ggagtccaag
     2161 agtttgcatt tctcactggt ttccaggtga ttctggtgct gccagtctgg ggaccacatt
     2221 tcgagaacca ctgtgcttaa ctgtcaggga gggcaaccca ggcagtgggc tgggagtatt
     2281 gtcagcatta tccctattct actgcctgtg gttgatcggg tcttgtgggt cctatggttc
     2341 gtcagagaat acacttgccc agagtatatt aactgctact ttctgttaca aaaatgctgc
     2401 cagaacccac taggacggct gtaatcagaa ggatggacaa taacaagtgt tggtgaggat
     2461 gtagagaact ggagccatca tacactgctg gtgggaatgt caagtgttcc agctgctttg
     2521 gaaaacagtc tggcagttcc tcaaaaagtt aaaatagagt taccgtgacc cagcagttcc
     2581 cctccccagt atttacctga gagaattgaa aacatggcca tgaaagaact tgtacgtgaa
     2641 tgttcatagc agcattactc gtgagagaca aaagatgaaa ataacccaaa tgtccaccca
     2701 ctggtgaata gataaagaaa acaaagaaaa tgtggtccat ccattccatg aggtgttgtt
     2761 cagccataaa aaggaaaata agtactgata catgctccga catggatgga tatgctaagt
     2821 gaaagaagct gtcacaaaag accacatttg tacgatttca tttatatgaa atgtccagag
     2881 tcgagaaacc catagacata gaaagtaaat tagtagtttc tagaggctgg caggggcttg
     2941 gggttgaaga atggggagtg cttgcttgtg ggtacagggt ttctttgggg gtgatgaaaa
     3001 tgtccagaaa ttatgcagtg gtgatggttg cacaactctg aatatactag gtaacactga
     3061 attgtacaaa aggggaaaat tctatggtat gtgaatcata tctcaataaa gctggaaacc
     3121 ccccccacct ctgccacagg accatgtacc tcttatgacc cttttcactt gatgtagtag
     3181 ttactgtgtg gagttgctga tttgaaatta ccctattcat gttgtaattc tggtttgagg
     3241 gttttctcgg tttggtgact ttgcattggg agcaaaacat tgtttcaaat gaatttgttt
     3301 taaaatattg atgatagagc taaaatgaac agcatggtat aagggagggg atgctgtcag
     3361 gatcagaaga cctgagttat cgtcccagct ctgcctctga ctcatgtgtg gcctcagaca
     3421 aacccatttc taaatgagag agttggtgag aggcatttcc aacttctgct ctgcctctga
     3481 gttctccctg atgctttatc atgccagtgc cagacaccaa actggccctg gcccttcagg
     3541 ttcaatcttc agtaccaaca gaactgcaaa atcataagag gaacttacat gctcactaaa
     3601 acctaggtga gttcattgcc cacatattca gcaaaagtat aatcaggaga agaggcagat
     3661 gaggtgagcc attctcaaag cacagcgcat gatttagtgg tctctctact aaccttattc
     3721 caagtttttt ttttttttaa tcaccatggg gacatcactg gaggtccagt ggttaagact
     3781 ctacacttcc actgcaaagg gcaagggttt gatccctggt cagggaacta agatcctgca
     3841 tgccacatgg tgtggccaaa aaaaaagaaa aaaaatgatc actaccatgt ggtttatagt
     3901 gtgttttctc tttatctcat gtgatgctac aaacacccca agcttcggag agcctccagg
     3961 gattgtaaat cgttcagcag agacaggaca cgtgagtgtc cttaaaacga ggcacatgag
     4021 gtgggagtgg ggtggaaagc ttatctcacg caggatgtgt taaaaaggtc ctctatgtat
     4081 ccaccctccc cccattattt taaaaataaa tgtcagtttc agtaatca
//
LOCUS       XM_032618333            8395 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein O-mannose kinase (POMK),
            transcript variant X2, mRNA.
ACCESSION   XM_032618333
VERSION     XM_032618333.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8395
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8395
                     /gene="POMK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746716"
     CDS             4451..5503
                     /gene="POMK"
                     /codon_start=1
                     /product="protein O-mannose kinase isoform X2"
                     /protein_id="XP_032474224.1"
                     /db_xref="GeneID:116746716"
                     /translation="METRPQGGRKGPPPRDVPPVVGLLLSMALMNALLYLCLDWLFIS
                     PRRSTEDPTRCPYGHFRMGPTSNCSPWLSCEQLRTEVRQMKRVGEGAVKRVFLSEWKE
                     RKVALSRLTRLEVRDDFLHGLRMLKSLQSEHVVTLLGYCEADNSILTEYHPLGSLSSL
                     EATLNLSKYRSTNTWQHRLQLALGYVAIIDFLHRSPLGTLVMCDSSDLPKTLSQYLLT
                     ANFSIVLNDLDALPLVNRSTGALVKCGHRELRGDFVAPEQLWPYGEDVPFHDDLMPAY
                     DEKIDIWKIPDVSSFLLGHVEGSDMVRFHLFDIHKACKSQTPAERPTAQDVLDTYQKV
                     LNLLRDTATSQTREML"
     misc_feature    4712..5434
                     /gene="POMK"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(4712..4720,4727..4729,4733..4735,4766..4768,
                     4853..4855,4895..4906,5069..5071,5078..5083,5096..5098,
                     5126..5131)
                     /gene="POMK"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270455"
ORIGIN      
        1 attcctggag aaaatatact ttgtgggtat ttaacatttt acatgtcagt ttttgttttt
       61 agactccaaa aatctctgaa tttatatttg aaattttcat aaagtgtcat ccctatgtag
      121 acaatttcaa aggtgtcatg aaaaaaaatt gtacagaaaa gttttcataa gatggcattt
      181 actctcagaa actaccttgt cagtgtaccc aaattgatta gattcagggc tgctgacttg
      241 acaaagctcg taagagactt taataaaaag cataatggca gtttactaat ttacactgag
      301 aaatgtaaca ggcagaccaa gcaattgcag cagcctagcc acttagcatt ttctgcctga
      361 agtttaacta ggtggcaatt catttatcaa aaggttgctt agtgagtatg gaatcaggtg
      421 aggaggcccc atggttcaag tgtataatga cttattttga tgatcctaat gagggtcatc
      481 tcctgatggg cagctgaata cagagacctg gcagtgcact tttctcattg gactaacaat
      541 taaaatgtgg tctgtggagg ggctgttagc tcaaaatcat ttatccaatg atactttcac
      601 tgtgttgcta tctgcactgc tggcgcataa acagtgggtc aaactgctgg tgccttagca
      661 caagtcaagg cagtggtact gagtactcat tgttttcttc actgccatgc attcactgaa
      721 caatgtactt gatgaatcag taattatata ttttagtcac agtactcacg gtcttttcag
      781 tattttgtgt gactgaatgg aagtatgcct aaactttttg cttgtcttga agaaaagcat
      841 ttgtgcagtt gtgtaagttg tggcccaaac aggccactct tcttggaatg ccatttgtac
      901 ttgaacaact gagtgtttat tgccaatcat aaaatttgag cttttgaggg aaaattttaa
      961 tctaccatag tcagcttgac agcctcccgc taccttctga tgaaatcaaa gtgatgatat
     1021 taatgaatta ttaatgaatt attattgaat caataatgaa tagttaaatg tatccacaat
     1081 tcgtggatcc gtatagctca atggaccaat attttccaaa tgacccatct atgatattat
     1141 catgaatgca taaacaatcc attcacatta ccagatgtaa caacacaaaa agtacattga
     1201 tagagttgca gattccacac tgcaactaac ctttgagaaa ccaccacttg tcgaattttg
     1261 gtgtagtatt ggagaatatc cacaacttct taaaagactc ctaaaatact ccctttctga
     1321 ctatatatct gtgtgtatga gtggattttc ttcatgtact tcaaccaaaa acaccatatt
     1381 ccaacagatt gaatatagaa gcagatagga gaatctggaa atcttctatt aagtcagacg
     1441 aaagagattt gcaaaaatgt aaaactgcca ttttcctggt tggttttttg gaaaatataa
     1501 gtttcataaa atgttatttt tgttaacatg taatgggttt attgctttat taatgaatta
     1561 aaattttaaa atctcaaata tagcaaatag cactagcttg gacccacata aaggaaatct
     1621 ggagctagag gagagagtaa gatctctgcc ttcagggatc ccaattttga gagagaccaa
     1681 cagtatgcta cacctctcag taccctgaaa atgtttatta gcttgttgaa gaagtactat
     1741 ttgggaacac agaagcagga gggattatct tcctgatgga gtcaggaagg gctcacaaag
     1801 gaggacaaat ttcgttaatt acatccttta gtgaggcctt caactcaatt ttttaattgg
     1861 ttatatccca aatattaact tagtaagaga gtccaaaagt tttccctctg gaagttatgt
     1921 tataaaaagc agtgtttttc aaaaaaaaaa aaaaggcaat gtttttcaaa ttgggttgta
     1981 acccattaat gggcaagtca gtgtgtatcg acaagcttta aaaacaaaaa agtatatata
     2041 atagaacttt caacttcact gaattctctc acattttatt tctttccttc tacttgactt
     2101 ggtccactct agcttttttg cctagcaatt attgtgatat aatcgacaag taacactgtg
     2161 taagcttaag acatacagta tgatgatttg atacatattg tgaaatgact accacgttaa
     2221 gattagtgac cagatccttc acctcacact tgtgtgtgtg agtgtgtgat ctctcttagc
     2281 aaatttctag tatattctaa ttttttaagg tggaagctta gattgatcca agcttagatg
     2341 atgatttttc cccaatataa gcatttaatg ctatacattc tatttttatt cagctcaaaa
     2401 tattttctaa tttcccttct tgagacatcc tctttcagtc agggattatt tagaagtgta
     2461 tcatttaatt gccaagtgat cagagatttt cctgttattc tctattatta ttatttagtg
     2521 gttactctag gaattataaa atacgtattc aactttttac agcctattta tatcaatatt
     2581 ttatcacttc aattggcatg tagaaacctt accacggtat aggtctcctc acccccacca
     2641 tttatgctat agctgtctta tatattacct atacttacat tgaaaacccc atcagacaat
     2701 ttttttgcat tcaaccacca gacatatttt aaagaactca agaatgtagt ctattacatt
     2761 taccaagaga tttactattt ttgttacttt tctttcattc ctgatgttcc aagtttcctt
     2821 ctggtataat tttccttttg cctgaagaaa tttctttcag cagttctttt agattagttc
     2881 tgctggttgc aaattctgtt tagttttcct cagctgagaa ggtctttatt tcatcttcat
     2941 tcctgaagga tgttttcgct ggatacagaa ttctgagttt ccagttcttt cagcacttga
     3001 gaaatgtcac ttcctgtcat tagaatggtc gttcacatac atgtcatctc tctctggctg
     3061 cttgcaaaat ttttgtcttt agtaatttga ttttgatgtg tctggccatg gatgtctttg
     3121 gatttaccct atttgctcag cttcttgaat ctgtaggtgt caccaaactt gggatatctt
     3181 cagccattac ttcttcaaac attttttcag ccctttctct tctgtgggat tctcaatgca
     3241 agaatgttag accttttgtt attgtcccga aggtgccttt tgttcttttt tttctttctt
     3301 tttccttttt ttccctctgt tggtcagatt agatcatttc tattaatctg tcttcaaatt
     3361 cactgacttt ttttctcttg tcatctccat tctactattg aaccaatcca atgagctttt
     3421 tgtcttggtt attatatttc tcagttctag acatgggcat tggaagggct gcagcctgtg
     3481 aattattgtg aagcgatggg gagttacccg aaacccactg gtaagtttaa acaccagatg
     3541 tggatggctg tggctcacga caggaactga agacacagag agatgctgag gtgcgtgcgt
     3601 gtgttttgtg cgttcctacg cagcgcggct cagctgggtg catttttccg cattcaccta
     3661 gtgtttttcc aggatgaagt tacgcataaa caaacgtgga cgtctagcac gggcaccccc
     3721 gggggcctgt aaaagcacag agcgctggcc ccagccccgt ctgggttgga gcccagaatt
     3781 cgcactcctg acaagttccc tggagccgtg aagcgtcggt acctggcctg aggaccgccc
     3841 tttggaagca cggccttgcg ctgagcggga gctttctgca gcgtctagat cgtacaagtc
     3901 ctctccgcac cggcacccgc gcccggctgc gcgtccggac taaacacgtc accgccctca
     3961 cgcgctggca gagaagcagc cgccacagga gccggccggg tgcgccgacg ctgcttccgg
     4021 gtgcactccg acactggctt tgcgttccgg cgaccgacct ccgggtgcgc ggcggcggga
     4081 ggacgacact agggcgcacc ctcgcgctgg tcctgctggg cgcgcttccg gccacgcagg
     4141 cgcaggaggc cgcgagccag accgggaacc gggactgcag gaaagaaaaa agatcctagt
     4201 cggtgaggaa aatggattgg aaaagagaaa gcagtgggag agtgcgtagg aaagcgttgc
     4261 agaagcccag gaaggtcacc ttctaagaat caggcgtcgg tggaagaagc tcaagagacc
     4321 gtgaggcctg agtagtgaac gtcgtcatca tgtccacagg agtcctggaa gatgcctgga
     4381 gggagagagg tggagagaga gatgtgggcc cggaatctcg gtgaggaagg agctcgcaga
     4441 agccagcacc atggagacga ggccccaggg gggcaggaaa gggcccccgc ccagggacgt
     4501 gcccccagtg gtgggactgc tgctgtccat ggccctcatg aacgccctcc tctacctctg
     4561 cctcgactgg ctcttcatct caccccggcg ctccacggag gaccccacgc gctgtcccta
     4621 cggccacttc cggatggggc cgacgagcaa ctgctccccg tggctgtcct gcgagcagct
     4681 gaggacagaa gtgagacaga tgaagcgtgt cggggaagga gccgtgaaga gagtgtttct
     4741 gtccgagtgg aaggaacgca aggtggcttt gtcgcggctc accaggctgg aggtaagaga
     4801 cgacttcctg cacggactgc ggatgctgaa gtcgttgcag agtgagcacg tcgtcacgct
     4861 gctgggctac tgtgaggctg acaacagcat cctcaccgag taccacccct taggctccct
     4921 gagcagcctg gaggcgacgc tgaacctctc caagtaccgg agcacgaaca catggcagca
     4981 caggctgcag ctggccctgg gctacgtggc catcatcgac ttcctgcacc gtagccccct
     5041 gggcacgctg gtcatgtgcg actccagcga cctgcccaag acgctgtccc agtacctgct
     5101 gaccgccaac ttcagcatcg tgctcaacga cctggacgcc ctgcccctgg tgaaccgcag
     5161 caccggggcc ctggtgaagt gcggccaccg ggagcttcgc ggggacttcg tggccccaga
     5221 gcagctgtgg ccctacggag aggacgtgcc ttttcacgac gacctcatgc ccgcgtatga
     5281 cgagaagatc gacatctgga agattccaga cgtctccagt ttccttctgg ggcacgtaga
     5341 agggagcgac atggtccgat tccacttgtt tgatattcac aaggcgtgta agagccagac
     5401 gcctgcagag agacccaccg ctcaggacgt cctggacact taccagaagg ttttgaatct
     5461 actcagagac accgcgacat ctcagacaag agagatgctg taaaaaccag tgcagtcggt
     5521 gaggtatggg agtcaaggat cggatggaag agttacagtg gttccgctct gatggtgagg
     5581 tttttgctgc tttgacccgt ggttcttcca tccgcgtgca caagtgagcg gctccctatc
     5641 ctggctgcct ggcaggagtt actaagccag agcaaaccgg gcttgatggg agcctggctt
     5701 caggcaaagg tgcaaagaag cagcgagtct ggccagtatc tgaaggaagt aacaaaaatg
     5761 gagctacaaa gaggcttccc taacacctaa atgtgtaagc ttgtaagaaa tgtgtgtaga
     5821 gatgttttta aattgcagtg tacagaagaa acaagcagta gtactcgctt ttttaggtga
     5881 gtattgcggt gtatttcact ggtactgatg gggcatctct accatttcaa atgattgctc
     5941 tgtgaagctc ccttgccatt ccctttccca gcgagcttgc acgctctttg aaattttgaa
     6001 tggataagga acatttaaaa catcaagtat gatggagatt atgttactgc cttggatggt
     6061 gcttgtgaaa ttcctactta ccttccagct ggattttctg tgtccaaaat taattattgt
     6121 gagcatttta tatcaacagt atctgtcgct cattgctgga aggtgtcaag cccttccact
     6181 tgagttgcat gattgaatcc ttcaaatagc tctttccttg gtcactgtca tccttgtttg
     6241 caggggatga tgggtttggt gcatagtcat catcgccagt aagggggtta aagctgactg
     6301 aggggcaaag atgctgtgcg gccgactgcc tgcccctggc ttgcacaggc ctcacagtca
     6361 ctggagtcac agggagctgg gccctgaccc acaggctctg actcagtctg tctgggtgga
     6421 gtccaagagt ttgcatttct cactggtttc caggtgattc tggtgctgcc agtctgggga
     6481 ccacatttcg agaaccactg tgcttaactg tcagggaggg caacccaggc agtgggctgg
     6541 gagtattgtc agcattatcc ctattctact gcctgtggtt gatcgggtct tgtgggtcct
     6601 atggttcgtc agagaataca cttgcccaga gtatattaac tgctactttc tgttacaaaa
     6661 atgctgccag aacccactag gacggctgta atcagaagga tggacaataa caagtgttgg
     6721 tgaggatgta gagaactgga gccatcatac actgctggtg ggaatgtcaa gtgttccagc
     6781 tgctttggaa aacagtctgg cagttcctca aaaagttaaa atagagttac cgtgacccag
     6841 cagttcccct ccccagtatt tacctgagag aattgaaaac atggccatga aagaacttgt
     6901 acgtgaatgt tcatagcagc attactcgtg agagacaaaa gatgaaaata acccaaatgt
     6961 ccacccactg gtgaatagat aaagaaaaca aagaaaatgt ggtccatcca ttccatgagg
     7021 tgttgttcag ccataaaaag gaaaataagt actgatacat gctccgacat ggatggatat
     7081 gctaagtgaa agaagctgtc acaaaagacc acatttgtac gatttcattt atatgaaatg
     7141 tccagagtcg agaaacccat agacatagaa agtaaattag tagtttctag aggctggcag
     7201 gggcttgggg ttgaagaatg gggagtgctt gcttgtgggt acagggtttc tttgggggtg
     7261 atgaaaatgt ccagaaatta tgcagtggtg atggttgcac aactctgaat atactaggta
     7321 acactgaatt gtacaaaagg ggaaaattct atggtatgtg aatcatatct caataaagct
     7381 ggaaaccccc cccacctctg ccacaggacc atgtacctct tatgaccctt ttcacttgat
     7441 gtagtagtta ctgtgtggag ttgctgattt gaaattaccc tattcatgtt gtaattctgg
     7501 tttgagggtt ttctcggttt ggtgactttg cattgggagc aaaacattgt ttcaaatgaa
     7561 tttgttttaa aatattgatg atagagctaa aatgaacagc atggtataag ggaggggatg
     7621 ctgtcaggat cagaagacct gagttatcgt cccagctctg cctctgactc atgtgtggcc
     7681 tcagacaaac ccatttctaa atgagagagt tggtgagagg catttccaac ttctgctctg
     7741 cctctgagtt ctccctgatg ctttatcatg ccagtgccag acaccaaact ggccctggcc
     7801 cttcaggttc aatcttcagt accaacagaa ctgcaaaatc ataagaggaa cttacatgct
     7861 cactaaaacc taggtgagtt cattgcccac atattcagca aaagtataat caggagaaga
     7921 ggcagatgag gtgagccatt ctcaaagcac agcgcatgat ttagtggtct ctctactaac
     7981 cttattccaa gttttttttt tttttaatca ccatggggac atcactggag gtccagtggt
     8041 taagactcta cacttccact gcaaagggca agggtttgat ccctggtcag ggaactaaga
     8101 tcctgcatgc cacatggtgt ggccaaaaaa aaagaaaaaa aatgatcact accatgtggt
     8161 ttatagtgtg ttttctcttt atctcatgtg atgctacaaa caccccaagc ttcggagagc
     8221 ctccagggat tgtaaatcgt tcagcagaga caggacacgt gagtgtcctt aaaacgaggc
     8281 acatgaggtg ggagtggggt ggaaagctta tctcacgcag gatgtgttaa aaaggtcctc
     8341 tatgtatcca ccctcccccc attattttaa aaataaatgt cagtttcagt aatca
//
LOCUS       XM_032618334            4346 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein O-mannose kinase (POMK),
            transcript variant X3, mRNA.
ACCESSION   XM_032618334
VERSION     XM_032618334.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4346
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4346
                     /gene="POMK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746716"
     CDS             402..1454
                     /gene="POMK"
                     /codon_start=1
                     /product="protein O-mannose kinase isoform X2"
                     /protein_id="XP_032474225.1"
                     /db_xref="GeneID:116746716"
                     /translation="METRPQGGRKGPPPRDVPPVVGLLLSMALMNALLYLCLDWLFIS
                     PRRSTEDPTRCPYGHFRMGPTSNCSPWLSCEQLRTEVRQMKRVGEGAVKRVFLSEWKE
                     RKVALSRLTRLEVRDDFLHGLRMLKSLQSEHVVTLLGYCEADNSILTEYHPLGSLSSL
                     EATLNLSKYRSTNTWQHRLQLALGYVAIIDFLHRSPLGTLVMCDSSDLPKTLSQYLLT
                     ANFSIVLNDLDALPLVNRSTGALVKCGHRELRGDFVAPEQLWPYGEDVPFHDDLMPAY
                     DEKIDIWKIPDVSSFLLGHVEGSDMVRFHLFDIHKACKSQTPAERPTAQDVLDTYQKV
                     LNLLRDTATSQTREML"
     misc_feature    663..1385
                     /gene="POMK"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(663..671,678..680,684..686,717..719,804..806,
                     846..857,1020..1022,1029..1034,1047..1049,1077..1082)
                     /gene="POMK"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270455"
ORIGIN      
        1 cggcgggcgg gcgcggaggt agctgggccg cgtcctgccc ggcgcccgag ctgggcttga
       61 gccgacggac acgccgccgg gacaggcttc agctcctgcc tctgttgatg ccgcgctgcc
      121 accgcctcca ggaaagaaaa aagatcctag tcggtgagga aaatggattg gaaaagagaa
      181 agcagtggga gagtgcgtag gaaagcgttg cagaagccca ggaaggtcac cttctaagaa
      241 tcaggcgtcg gtggaagaag ctcaagagac cgtgaggcct gagtagtgaa cgtcgtcatc
      301 atgtccacag gagtcctgga agatgcctgg agggagagag gtggagagag agatgtgggc
      361 ccggaatctc ggtgaggaag gagctcgcag aagccagcac catggagacg aggccccagg
      421 ggggcaggaa agggcccccg cccagggacg tgcccccagt ggtgggactg ctgctgtcca
      481 tggccctcat gaacgccctc ctctacctct gcctcgactg gctcttcatc tcaccccggc
      541 gctccacgga ggaccccacg cgctgtccct acggccactt ccggatgggg ccgacgagca
      601 actgctcccc gtggctgtcc tgcgagcagc tgaggacaga agtgagacag atgaagcgtg
      661 tcggggaagg agccgtgaag agagtgtttc tgtccgagtg gaaggaacgc aaggtggctt
      721 tgtcgcggct caccaggctg gaggtaagag acgacttcct gcacggactg cggatgctga
      781 agtcgttgca gagtgagcac gtcgtcacgc tgctgggcta ctgtgaggct gacaacagca
      841 tcctcaccga gtaccacccc ttaggctccc tgagcagcct ggaggcgacg ctgaacctct
      901 ccaagtaccg gagcacgaac acatggcagc acaggctgca gctggccctg ggctacgtgg
      961 ccatcatcga cttcctgcac cgtagccccc tgggcacgct ggtcatgtgc gactccagcg
     1021 acctgcccaa gacgctgtcc cagtacctgc tgaccgccaa cttcagcatc gtgctcaacg
     1081 acctggacgc cctgcccctg gtgaaccgca gcaccggggc cctggtgaag tgcggccacc
     1141 gggagcttcg cggggacttc gtggccccag agcagctgtg gccctacgga gaggacgtgc
     1201 cttttcacga cgacctcatg cccgcgtatg acgagaagat cgacatctgg aagattccag
     1261 acgtctccag tttccttctg gggcacgtag aagggagcga catggtccga ttccacttgt
     1321 ttgatattca caaggcgtgt aagagccaga cgcctgcaga gagacccacc gctcaggacg
     1381 tcctggacac ttaccagaag gttttgaatc tactcagaga caccgcgaca tctcagacaa
     1441 gagagatgct gtaaaaacca gtgcagtcgg tgaggtatgg gagtcaagga tcggatggaa
     1501 gagttacagt ggttccgctc tgatggtgag gtttttgctg ctttgacccg tggttcttcc
     1561 atccgcgtgc acaagtgagc ggctccctat cctggctgcc tggcaggagt tactaagcca
     1621 gagcaaaccg ggcttgatgg gagcctggct tcaggcaaag gtgcaaagaa gcagcgagtc
     1681 tggccagtat ctgaaggaag taacaaaaat ggagctacaa agaggcttcc ctaacaccta
     1741 aatgtgtaag cttgtaagaa atgtgtgtag agatgttttt aaattgcagt gtacagaaga
     1801 aacaagcagt agtactcgct tttttaggtg agtattgcgg tgtatttcac tggtactgat
     1861 ggggcatctc taccatttca aatgattgct ctgtgaagct cccttgccat tccctttccc
     1921 agcgagcttg cacgctcttt gaaattttga atggataagg aacatttaaa acatcaagta
     1981 tgatggagat tatgttactg ccttggatgg tgcttgtgaa attcctactt accttccagc
     2041 tggattttct gtgtccaaaa ttaattattg tgagcatttt atatcaacag tatctgtcgc
     2101 tcattgctgg aaggtgtcaa gcccttccac ttgagttgca tgattgaatc cttcaaatag
     2161 ctctttcctt ggtcactgtc atccttgttt gcaggggatg atgggtttgg tgcatagtca
     2221 tcatcgccag taagggggtt aaagctgact gaggggcaaa gatgctgtgc ggccgactgc
     2281 ctgcccctgg cttgcacagg cctcacagtc actggagtca cagggagctg ggccctgacc
     2341 cacaggctct gactcagtct gtctgggtgg agtccaagag tttgcatttc tcactggttt
     2401 ccaggtgatt ctggtgctgc cagtctgggg accacatttc gagaaccact gtgcttaact
     2461 gtcagggagg gcaacccagg cagtgggctg ggagtattgt cagcattatc cctattctac
     2521 tgcctgtggt tgatcgggtc ttgtgggtcc tatggttcgt cagagaatac acttgcccag
     2581 agtatattaa ctgctacttt ctgttacaaa aatgctgcca gaacccacta ggacggctgt
     2641 aatcagaagg atggacaata acaagtgttg gtgaggatgt agagaactgg agccatcata
     2701 cactgctggt gggaatgtca agtgttccag ctgctttgga aaacagtctg gcagttcctc
     2761 aaaaagttaa aatagagtta ccgtgaccca gcagttcccc tccccagtat ttacctgaga
     2821 gaattgaaaa catggccatg aaagaacttg tacgtgaatg ttcatagcag cattactcgt
     2881 gagagacaaa agatgaaaat aacccaaatg tccacccact ggtgaataga taaagaaaac
     2941 aaagaaaatg tggtccatcc attccatgag gtgttgttca gccataaaaa ggaaaataag
     3001 tactgataca tgctccgaca tggatggata tgctaagtga aagaagctgt cacaaaagac
     3061 cacatttgta cgatttcatt tatatgaaat gtccagagtc gagaaaccca tagacataga
     3121 aagtaaatta gtagtttcta gaggctggca ggggcttggg gttgaagaat ggggagtgct
     3181 tgcttgtggg tacagggttt ctttgggggt gatgaaaatg tccagaaatt atgcagtggt
     3241 gatggttgca caactctgaa tatactaggt aacactgaat tgtacaaaag gggaaaattc
     3301 tatggtatgt gaatcatatc tcaataaagc tggaaacccc ccccacctct gccacaggac
     3361 catgtacctc ttatgaccct tttcacttga tgtagtagtt actgtgtgga gttgctgatt
     3421 tgaaattacc ctattcatgt tgtaattctg gtttgagggt tttctcggtt tggtgacttt
     3481 gcattgggag caaaacattg tttcaaatga atttgtttta aaatattgat gatagagcta
     3541 aaatgaacag catggtataa gggaggggat gctgtcagga tcagaagacc tgagttatcg
     3601 tcccagctct gcctctgact catgtgtggc ctcagacaaa cccatttcta aatgagagag
     3661 ttggtgagag gcatttccaa cttctgctct gcctctgagt tctccctgat gctttatcat
     3721 gccagtgcca gacaccaaac tggccctggc ccttcaggtt caatcttcag taccaacaga
     3781 actgcaaaat cataagagga acttacatgc tcactaaaac ctaggtgagt tcattgccca
     3841 catattcagc aaaagtataa tcaggagaag aggcagatga ggtgagccat tctcaaagca
     3901 cagcgcatga tttagtggtc tctctactaa ccttattcca agtttttttt ttttttaatc
     3961 accatgggga catcactgga ggtccagtgg ttaagactct acacttccac tgcaaagggc
     4021 aagggtttga tccctggtca gggaactaag atcctgcatg ccacatggtg tggccaaaaa
     4081 aaaagaaaaa aaatgatcac taccatgtgg tttatagtgt gttttctctt tatctcatgt
     4141 gatgctacaa acaccccaag cttcggagag cctccaggga ttgtaaatcg ttcagcagag
     4201 acaggacacg tgagtgtcct taaaacgagg cacatgaggt gggagtgggg tggaaagctt
     4261 atctcacgca ggatgtgtta aaaaggtcct ctatgtatcc accctccccc cattatttta
     4321 aaaataaatg tcagtttcag taatca
//
LOCUS       XM_032618335            7020 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein O-mannose kinase (POMK),
            transcript variant X4, mRNA.
ACCESSION   XM_032618335
VERSION     XM_032618335.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7020
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7020
                     /gene="POMK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746716"
     CDS             3076..4128
                     /gene="POMK"
                     /codon_start=1
                     /product="protein O-mannose kinase isoform X2"
                     /protein_id="XP_032474226.1"
                     /db_xref="GeneID:116746716"
                     /translation="METRPQGGRKGPPPRDVPPVVGLLLSMALMNALLYLCLDWLFIS
                     PRRSTEDPTRCPYGHFRMGPTSNCSPWLSCEQLRTEVRQMKRVGEGAVKRVFLSEWKE
                     RKVALSRLTRLEVRDDFLHGLRMLKSLQSEHVVTLLGYCEADNSILTEYHPLGSLSSL
                     EATLNLSKYRSTNTWQHRLQLALGYVAIIDFLHRSPLGTLVMCDSSDLPKTLSQYLLT
                     ANFSIVLNDLDALPLVNRSTGALVKCGHRELRGDFVAPEQLWPYGEDVPFHDDLMPAY
                     DEKIDIWKIPDVSSFLLGHVEGSDMVRFHLFDIHKACKSQTPAERPTAQDVLDTYQKV
                     LNLLRDTATSQTREML"
     misc_feature    3337..4059
                     /gene="POMK"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(3337..3345,3352..3354,3358..3360,3391..3393,
                     3478..3480,3520..3531,3694..3696,3703..3708,3721..3723,
                     3751..3756)
                     /gene="POMK"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270455"
ORIGIN      
        1 aggccgcgag ccagaccggg aaccgggact gcaggtaggg gcggcgggcc gggggaggcg
       61 tcggcaggta ggggcggcgg gcgggcgcgg aggtagctgg gccgcgtcct gcccggcgcc
      121 cgagctgggc ttgagccgac ggacacgccg ccgggacagg cttcagctcc tgcctctgtt
      181 gatgccgcgc tgccaccgcc tccaggtctg gaatcgtctg ctgccccttt ttaaaaagca
      241 gggtttagcc gtgttctttg gtggtcttgt cttctccacc cttgcttgac ctttactata
      301 gaaccttaag gctaagcagg catccggaat atttaaaata attaatgtac ctgtgctttg
      361 ttggcaaaat gggattctaa ccaaaattgt atgggcgggg gtgggggcac taattcatca
      421 tttcttctct ggttggttgt gtaaattatt ctgtagctgg taaaaaccaa ttttgttcca
      481 ttgcttttct ttctttttaa attaagctgt gagtgtatag cagtgggaac cacttttttc
      541 ctttgccagt tctttcttat tgtcagaaat cctttgtgtc taaacagtgc ctgaatttct
      601 cctacccacc tggaccttta attgttattt cttaatttgt agaagctttc agtgtcgttt
      661 tgcttatttc tgggcgagaa catttcctca gccatacagc ctcttcccta actctggaca
      721 acatactaca gaaatatgcc tttaaaagaa aaaggagggg acttccctgg tggtccagta
      781 gtagagaatc ctccttacaa tgcaggggat gcgggttcga tccctggtca gggaactaag
      841 atcccacatg ccgcggggca actaagcccg cacaccacag ctggagagcc ttcttgccgc
      901 aaagtgcaaa gcccacatgc cctggagcct gggcaccaca actagaaaga cgcccgcggc
      961 cgcaatgaaa gatcctgcat gccacaacta agacccgatg cagccaaaaa caaattaagt
     1021 aaataataaa tctttaaaaa aaaagaccat aaggtgatag agtgggtgaa tgacttcttt
     1081 aagaagtggg tgggacttcc ctgatggcac agtggttaag aatctgccag ccaacgcagg
     1141 ggacacgggt tcgagccctg gtccgggaag atcccacatg tcgcagagta actaagccca
     1201 tgtgccacaa ctactgagcc cctgctccgc aacaagggaa gccaccacaa tgagaagccc
     1261 gggcattgca acgaagagta gcccctgctc gccgcaacta gataaagtcc gtgcgcagca
     1321 atgaaaaccc aacacagcca aaaataaata aaatgattta aaaaaaaaaa gaccctatgt
     1381 aaaccttcca catgtacaca ggaagtgtgt gcaaacctga atcaccagct gcggtatagt
     1441 caatccaaaa gagcgaagta gagcatcatg tatctgcttc gataaacctc aaaaacataa
     1501 tgctgggctt ttaaaaaagc aagtcataag aggactttgt gtcctgcatc cctgatacag
     1561 agggattcta cgccatttta tctgagggac ttgagcatcc gcagatgttg gttttcgcag
     1621 ggggtcctgg aaccaatccc ctgcggttac tgagggacga acagtacaac actgcttgta
     1681 ttaatataaa gtttgaaaac gtacgtgtat tatgtgttgt tatttatggg cacatactca
     1741 tgtggtgaga ataaaaagca cgcatggaaa ttattaaagt tcagcttgca cccccacgtc
     1801 acgtgtgtta acacagatgt ctgggctcca cttcagagtt tctggtgcag taggtgtggg
     1861 gcaaggactt aagaacctgc atttctcaga agttccaggt ggtgctgcgg caggtacagg
     1921 gaccacagtt tgagaactac tgacatacca actcgaggat ggggactatt tcttgggatg
     1981 gagcagaata ggactgcgag gggcccctgg cttcaaccat gtttgtaata ggttatttct
     2041 ttaacaaggg gatgcagtat tacttgacaa agctggatgg gtgctcatga tcttacgttt
     2101 taactttctt tatgcttgaa acatttcagg aaagaaaaaa gatcctagtc ggtgaggaaa
     2161 atggattgga aaagagaaag cagtgggaga gtgcgtagga aagcgttgca gaagcccagg
     2221 aagaggggaa ccctgtggag tgggcatgct ggcgaccgga gagacagaat tcaggtatgg
     2281 atgttgcaga ccttgagggg ccaactgagc gaagtgtaag agaaagagcc aggccacaga
     2341 agagacttga aacaatcggc gtgtacacag ccgccagagc cacatgcggg gacgagaccg
     2401 cgtggacggc gtggaatgga aggggggccc acgacatcca gagggatgcc gtcacctaag
     2461 ctgggctggc tggctgctcc ccgccaccca ttcttgtacg gcctgtgagc tgaggatgct
     2521 tttcactttt ttaaatgttg ggggaaaaat caaaaaaaca tgtggcatgt gaaattcgaa
     2581 tctcagcttc catgaacaca gtcttgttgg ggcacagtca tgctcgctca cttgtgtagc
     2641 acggcctggc tgctgctgac aacgagatga agtaactgac ggttacctgg tcgctcggca
     2701 ccactgcttc tcaccccgca catcacggtg ccgtggccac tcgattcccg cttctggccc
     2761 ctaaaccgga acatttgctg tctgatcctt tacagaaaac agttctctgc tcccggacct
     2821 caggtctaag ttgacacact cttggtcact ttaaatgcta cagaggagag atggccgtgg
     2881 ttttgcccat ttctttaagg tcaccttcta agaatcaggc gtcggtggaa gaagctcaag
     2941 agaccgtgag gcctgagtag tgaacgtcgt catcatgtcc acaggagtcc tggaagatgc
     3001 ctggagggag agaggtggag agagagatgt gggcccggaa tctcggtgag gaaggagctc
     3061 gcagaagcca gcaccatgga gacgaggccc caggggggca ggaaagggcc cccgcccagg
     3121 gacgtgcccc cagtggtggg actgctgctg tccatggccc tcatgaacgc cctcctctac
     3181 ctctgcctcg actggctctt catctcaccc cggcgctcca cggaggaccc cacgcgctgt
     3241 ccctacggcc acttccggat ggggccgacg agcaactgct ccccgtggct gtcctgcgag
     3301 cagctgagga cagaagtgag acagatgaag cgtgtcgggg aaggagccgt gaagagagtg
     3361 tttctgtccg agtggaagga acgcaaggtg gctttgtcgc ggctcaccag gctggaggta
     3421 agagacgact tcctgcacgg actgcggatg ctgaagtcgt tgcagagtga gcacgtcgtc
     3481 acgctgctgg gctactgtga ggctgacaac agcatcctca ccgagtacca ccccttaggc
     3541 tccctgagca gcctggaggc gacgctgaac ctctccaagt accggagcac gaacacatgg
     3601 cagcacaggc tgcagctggc cctgggctac gtggccatca tcgacttcct gcaccgtagc
     3661 cccctgggca cgctggtcat gtgcgactcc agcgacctgc ccaagacgct gtcccagtac
     3721 ctgctgaccg ccaacttcag catcgtgctc aacgacctgg acgccctgcc cctggtgaac
     3781 cgcagcaccg gggccctggt gaagtgcggc caccgggagc ttcgcgggga cttcgtggcc
     3841 ccagagcagc tgtggcccta cggagaggac gtgccttttc acgacgacct catgcccgcg
     3901 tatgacgaga agatcgacat ctggaagatt ccagacgtct ccagtttcct tctggggcac
     3961 gtagaaggga gcgacatggt ccgattccac ttgtttgata ttcacaaggc gtgtaagagc
     4021 cagacgcctg cagagagacc caccgctcag gacgtcctgg acacttacca gaaggttttg
     4081 aatctactca gagacaccgc gacatctcag acaagagaga tgctgtaaaa accagtgcag
     4141 tcggtgaggt atgggagtca aggatcggat ggaagagtta cagtggttcc gctctgatgg
     4201 tgaggttttt gctgctttga cccgtggttc ttccatccgc gtgcacaagt gagcggctcc
     4261 ctatcctggc tgcctggcag gagttactaa gccagagcaa accgggcttg atgggagcct
     4321 ggcttcaggc aaaggtgcaa agaagcagcg agtctggcca gtatctgaag gaagtaacaa
     4381 aaatggagct acaaagaggc ttccctaaca cctaaatgtg taagcttgta agaaatgtgt
     4441 gtagagatgt ttttaaattg cagtgtacag aagaaacaag cagtagtact cgctttttta
     4501 ggtgagtatt gcggtgtatt tcactggtac tgatggggca tctctaccat ttcaaatgat
     4561 tgctctgtga agctcccttg ccattccctt tcccagcgag cttgcacgct ctttgaaatt
     4621 ttgaatggat aaggaacatt taaaacatca agtatgatgg agattatgtt actgccttgg
     4681 atggtgcttg tgaaattcct acttaccttc cagctggatt ttctgtgtcc aaaattaatt
     4741 attgtgagca ttttatatca acagtatctg tcgctcattg ctggaaggtg tcaagccctt
     4801 ccacttgagt tgcatgattg aatccttcaa atagctcttt ccttggtcac tgtcatcctt
     4861 gtttgcaggg gatgatgggt ttggtgcata gtcatcatcg ccagtaaggg ggttaaagct
     4921 gactgagggg caaagatgct gtgcggccga ctgcctgccc ctggcttgca caggcctcac
     4981 agtcactgga gtcacaggga gctgggccct gacccacagg ctctgactca gtctgtctgg
     5041 gtggagtcca agagtttgca tttctcactg gtttccaggt gattctggtg ctgccagtct
     5101 ggggaccaca tttcgagaac cactgtgctt aactgtcagg gagggcaacc caggcagtgg
     5161 gctgggagta ttgtcagcat tatccctatt ctactgcctg tggttgatcg ggtcttgtgg
     5221 gtcctatggt tcgtcagaga atacacttgc ccagagtata ttaactgcta ctttctgtta
     5281 caaaaatgct gccagaaccc actaggacgg ctgtaatcag aaggatggac aataacaagt
     5341 gttggtgagg atgtagagaa ctggagccat catacactgc tggtgggaat gtcaagtgtt
     5401 ccagctgctt tggaaaacag tctggcagtt cctcaaaaag ttaaaataga gttaccgtga
     5461 cccagcagtt cccctcccca gtatttacct gagagaattg aaaacatggc catgaaagaa
     5521 cttgtacgtg aatgttcata gcagcattac tcgtgagaga caaaagatga aaataaccca
     5581 aatgtccacc cactggtgaa tagataaaga aaacaaagaa aatgtggtcc atccattcca
     5641 tgaggtgttg ttcagccata aaaaggaaaa taagtactga tacatgctcc gacatggatg
     5701 gatatgctaa gtgaaagaag ctgtcacaaa agaccacatt tgtacgattt catttatatg
     5761 aaatgtccag agtcgagaaa cccatagaca tagaaagtaa attagtagtt tctagaggct
     5821 ggcaggggct tggggttgaa gaatggggag tgcttgcttg tgggtacagg gtttctttgg
     5881 gggtgatgaa aatgtccaga aattatgcag tggtgatggt tgcacaactc tgaatatact
     5941 aggtaacact gaattgtaca aaaggggaaa attctatggt atgtgaatca tatctcaata
     6001 aagctggaaa ccccccccac ctctgccaca ggaccatgta cctcttatga cccttttcac
     6061 ttgatgtagt agttactgtg tggagttgct gatttgaaat taccctattc atgttgtaat
     6121 tctggtttga gggttttctc ggtttggtga ctttgcattg ggagcaaaac attgtttcaa
     6181 atgaatttgt tttaaaatat tgatgataga gctaaaatga acagcatggt ataagggagg
     6241 ggatgctgtc aggatcagaa gacctgagtt atcgtcccag ctctgcctct gactcatgtg
     6301 tggcctcaga caaacccatt tctaaatgag agagttggtg agaggcattt ccaacttctg
     6361 ctctgcctct gagttctccc tgatgcttta tcatgccagt gccagacacc aaactggccc
     6421 tggcccttca ggttcaatct tcagtaccaa cagaactgca aaatcataag aggaacttac
     6481 atgctcacta aaacctaggt gagttcattg cccacatatt cagcaaaagt ataatcagga
     6541 gaagaggcag atgaggtgag ccattctcaa agcacagcgc atgatttagt ggtctctcta
     6601 ctaaccttat tccaagtttt tttttttttt aatcaccatg gggacatcac tggaggtcca
     6661 gtggttaaga ctctacactt ccactgcaaa gggcaagggt ttgatccctg gtcagggaac
     6721 taagatcctg catgccacat ggtgtggcca aaaaaaaaga aaaaaaatga tcactaccat
     6781 gtggtttata gtgtgttttc tctttatctc atgtgatgct acaaacaccc caagcttcgg
     6841 agagcctcca gggattgtaa atcgttcagc agagacagga cacgtgagtg tccttaaaac
     6901 gaggcacatg aggtgggagt ggggtggaaa gcttatctca cgcaggatgt gttaaaaagg
     6961 tcctctatgt atccaccctc cccccattat tttaaaaata aatgtcagtt tcagtaatca
//
LOCUS       XM_032618336            8301 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein O-mannose kinase (POMK),
            transcript variant X5, mRNA.
ACCESSION   XM_032618336
VERSION     XM_032618336.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8301
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8301
                     /gene="POMK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746716"
     CDS             4357..5409
                     /gene="POMK"
                     /codon_start=1
                     /product="protein O-mannose kinase isoform X2"
                     /protein_id="XP_032474227.1"
                     /db_xref="GeneID:116746716"
                     /translation="METRPQGGRKGPPPRDVPPVVGLLLSMALMNALLYLCLDWLFIS
                     PRRSTEDPTRCPYGHFRMGPTSNCSPWLSCEQLRTEVRQMKRVGEGAVKRVFLSEWKE
                     RKVALSRLTRLEVRDDFLHGLRMLKSLQSEHVVTLLGYCEADNSILTEYHPLGSLSSL
                     EATLNLSKYRSTNTWQHRLQLALGYVAIIDFLHRSPLGTLVMCDSSDLPKTLSQYLLT
                     ANFSIVLNDLDALPLVNRSTGALVKCGHRELRGDFVAPEQLWPYGEDVPFHDDLMPAY
                     DEKIDIWKIPDVSSFLLGHVEGSDMVRFHLFDIHKACKSQTPAERPTAQDVLDTYQKV
                     LNLLRDTATSQTREML"
     misc_feature    4618..5340
                     /gene="POMK"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(4618..4626,4633..4635,4639..4641,4672..4674,
                     4759..4761,4801..4812,4975..4977,4984..4989,5002..5004,
                     5032..5037)
                     /gene="POMK"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270455"
ORIGIN      
        1 attcctggag aaaatatact ttgtgggtat ttaacatttt acatgtcagt ttttgttttt
       61 agactccaaa aatctctgaa tttatatttg aaattttcat aaagtgtcat ccctatgtag
      121 acaatttcaa aggtgtcatg aaaaaaaatt gtacagaaaa gttttcataa gatggcattt
      181 actctcagaa actaccttgt cagtgtaccc aaattgatta gattcagggc tgctgacttg
      241 acaaagctcg taagagactt taataaaaag cataatggca gtttactaat ttacactgag
      301 aaatgtaaca ggcagaccaa gcaattgcag cagcctagcc acttagcatt ttctgcctga
      361 agtttaacta ggtggcaatt catttatcaa aaggttgctt agtgagtatg gaatcaggtg
      421 aggaggcccc atggttcaag tgtataatga cttattttga tgatcctaat gagggtcatc
      481 tcctgatggg cagctgaata cagagacctg gcagtgcact tttctcattg gactaacaat
      541 taaaatgtgg tctgtggagg ggctgttagc tcaaaatcat ttatccaatg atactttcac
      601 tgtgttgcta tctgcactgc tggcgcataa acagtgggtc aaactgctgg tgccttagca
      661 caagtcaagg cagtggtact gagtactcat tgttttcttc actgccatgc attcactgaa
      721 caatgtactt gatgaatcag taattatata ttttagtcac agtactcacg gtcttttcag
      781 tattttgtgt gactgaatgg aagtatgcct aaactttttg cttgtcttga agaaaagcat
      841 ttgtgcagtt gtgtaagttg tggcccaaac aggccactct tcttggaatg ccatttgtac
      901 ttgaacaact gagtgtttat tgccaatcat aaaatttgag cttttgaggg aaaattttaa
      961 tctaccatag tcagcttgac agcctcccgc taccttctga tgaaatcaaa gtgatgatat
     1021 taatgaatta ttaatgaatt attattgaat caataatgaa tagttaaatg tatccacaat
     1081 tcgtggatcc gtatagctca atggaccaat attttccaaa tgacccatct atgatattat
     1141 catgaatgca taaacaatcc attcacatta ccagatgtaa caacacaaaa agtacattga
     1201 tagagttgca gattccacac tgcaactaac ctttgagaaa ccaccacttg tcgaattttg
     1261 gtgtagtatt ggagaatatc cacaacttct taaaagactc ctaaaatact ccctttctga
     1321 ctatatatct gtgtgtatga gtggattttc ttcatgtact tcaaccaaaa acaccatatt
     1381 ccaacagatt gaatatagaa gcagatagga gaatctggaa atcttctatt aagtcagacg
     1441 aaagagattt gcaaaaatgt aaaactgcca ttttcctggt tggttttttg gaaaatataa
     1501 gtttcataaa atgttatttt tgttaacatg taatgggttt attgctttat taatgaatta
     1561 aaattttaaa atctcaaata tagcaaatag cactagcttg gacccacata aaggaaatct
     1621 ggagctagag gagagagtaa gatctctgcc ttcagggatc ccaattttga gagagaccaa
     1681 cagtatgcta cacctctcag taccctgaaa atgtttatta gcttgttgaa gaagtactat
     1741 ttgggaacac agaagcagga gggattatct tcctgatgga gtcaggaagg gctcacaaag
     1801 gaggacaaat ttcgttaatt acatccttta gtgaggcctt caactcaatt ttttaattgg
     1861 ttatatccca aatattaact tagtaagaga gtccaaaagt tttccctctg gaagttatgt
     1921 tataaaaagc agtgtttttc aaaaaaaaaa aaaaggcaat gtttttcaaa ttgggttgta
     1981 acccattaat gggcaagtca gtgtgtatcg acaagcttta aaaacaaaaa agtatatata
     2041 atagaacttt caacttcact gaattctctc acattttatt tctttccttc tacttgactt
     2101 ggtccactct agcttttttg cctagcaatt attgtgatat aatcgacaag taacactgtg
     2161 taagcttaag acatacagta tgatgatttg atacatattg tgaaatgact accacgttaa
     2221 gattagtgac cagatccttc acctcacact tgtgtgtgtg agtgtgtgat ctctcttagc
     2281 aaatttctag tatattctaa ttttttaagg tggaagctta gattgatcca agcttagatg
     2341 atgatttttc cccaatataa gcatttaatg ctatacattc tatttttatt cagctcaaaa
     2401 tattttctaa tttcccttct tgagacatcc tctttcagtc agggattatt tagaagtgta
     2461 tcatttaatt gccaagtgat cagagatttt cctgttattc tctattatta ttatttagtg
     2521 gttactctag gaattataaa atacgtattc aactttttac agcctattta tatcaatatt
     2581 ttatcacttc aattggcatg tagaaacctt accacggtat aggtctcctc acccccacca
     2641 tttatgctat agctgtctta tatattacct atacttacat tgaaaacccc atcagacaat
     2701 ttttttgcat tcaaccacca gacatatttt aaagaactca agaatgtagt ctattacatt
     2761 taccaagaga tttactattt ttgttacttt tctttcattc ctgatgttcc aagtttcctt
     2821 ctggtataat tttccttttg cctgaagaaa tttctttcag cagttctttt agattagttc
     2881 tgctggttgc aaattctgtt tagttttcct cagctgagaa ggtctttatt tcatcttcat
     2941 tcctgaagga tgttttcgct ggatacagaa ttctgagttt ccagttcttt cagcacttga
     3001 gaaatgtcac ttcctgtcat tagaatggtc gttcacatac atgtcatctc tctctggctg
     3061 cttgcaaaat ttttgtcttt agtaatttga ttttgatgtg tctggccatg gatgtctttg
     3121 gatttaccct atttgctcag cttcttgaat ctgtaggtgt caccaaactt gggatatctt
     3181 cagccattac ttcttcaaac attttttcag ccctttctct tctgtgggat tctcaatgca
     3241 agaatgttag accttttgtt attgtcccga aggtgccttt tgttcttttt tttctttctt
     3301 tttccttttt ttccctctgt tggtcagatt agatcatttc tattaatctg tcttcaaatt
     3361 cactgacttt ttttctcttg tcatctccat tctactattg aaccaatcca atgagctttt
     3421 tgtcttggtt attatatttc tcagttctag acatgggcat tggaagggct gcagcctgtg
     3481 aattattgtg aagcgatggg gagttacccg aaacccactg gtaagtttaa acaccagatg
     3541 tggatggctg tggctcacga caggaactga agacacagag agatgctgag gtgcgtgcgt
     3601 gtgttttgtg cgttcctacg cagcgcggct cagctgggtg catttttccg cattcaccta
     3661 gtgtttttcc aggatgaagt tacgcataaa caaacgtgga cgtctagcac gggcaccccc
     3721 gggggcctgt aaaagcacag agcgctggcc ccagccccgt ctgggttgga gcccagaatt
     3781 cgcactcctg acaagttccc tggagccgtg aagcgtcggt acctggcctg aggaccgccc
     3841 tttggaagca cggccttgcg ctgagcggga gctttctgca gcgtctagat cgtacaagtc
     3901 ctctccgcac cggcacccgc gcccggctgc gcgtccggac taaacacgtc accgccctca
     3961 cgcgctggca gagaagcagc cgccacagga gccggccggg tgcgccgacg ctgcttccgg
     4021 gtgcactccg acactggctt tgcgttccgg cgaccgacct ccgggtgcgc ggcggcggga
     4081 ggacgacact agggcgcacc ctcgcgctgg tcctgctggg cgcgcttccg gccacgcagg
     4141 cgcaggaggc cgcgagccag accgggaacc gggactgcag gtcaccttct aagaatcagg
     4201 cgtcggtgga agaagctcaa gagaccgtga ggcctgagta gtgaacgtcg tcatcatgtc
     4261 cacaggagtc ctggaagatg cctggaggga gagaggtgga gagagagatg tgggcccgga
     4321 atctcggtga ggaaggagct cgcagaagcc agcaccatgg agacgaggcc ccaggggggc
     4381 aggaaagggc ccccgcccag ggacgtgccc ccagtggtgg gactgctgct gtccatggcc
     4441 ctcatgaacg ccctcctcta cctctgcctc gactggctct tcatctcacc ccggcgctcc
     4501 acggaggacc ccacgcgctg tccctacggc cacttccgga tggggccgac gagcaactgc
     4561 tccccgtggc tgtcctgcga gcagctgagg acagaagtga gacagatgaa gcgtgtcggg
     4621 gaaggagccg tgaagagagt gtttctgtcc gagtggaagg aacgcaaggt ggctttgtcg
     4681 cggctcacca ggctggaggt aagagacgac ttcctgcacg gactgcggat gctgaagtcg
     4741 ttgcagagtg agcacgtcgt cacgctgctg ggctactgtg aggctgacaa cagcatcctc
     4801 accgagtacc accccttagg ctccctgagc agcctggagg cgacgctgaa cctctccaag
     4861 taccggagca cgaacacatg gcagcacagg ctgcagctgg ccctgggcta cgtggccatc
     4921 atcgacttcc tgcaccgtag ccccctgggc acgctggtca tgtgcgactc cagcgacctg
     4981 cccaagacgc tgtcccagta cctgctgacc gccaacttca gcatcgtgct caacgacctg
     5041 gacgccctgc ccctggtgaa ccgcagcacc ggggccctgg tgaagtgcgg ccaccgggag
     5101 cttcgcgggg acttcgtggc cccagagcag ctgtggccct acggagagga cgtgcctttt
     5161 cacgacgacc tcatgcccgc gtatgacgag aagatcgaca tctggaagat tccagacgtc
     5221 tccagtttcc ttctggggca cgtagaaggg agcgacatgg tccgattcca cttgtttgat
     5281 attcacaagg cgtgtaagag ccagacgcct gcagagagac ccaccgctca ggacgtcctg
     5341 gacacttacc agaaggtttt gaatctactc agagacaccg cgacatctca gacaagagag
     5401 atgctgtaaa aaccagtgca gtcggtgagg tatgggagtc aaggatcgga tggaagagtt
     5461 acagtggttc cgctctgatg gtgaggtttt tgctgctttg acccgtggtt cttccatccg
     5521 cgtgcacaag tgagcggctc cctatcctgg ctgcctggca ggagttacta agccagagca
     5581 aaccgggctt gatgggagcc tggcttcagg caaaggtgca aagaagcagc gagtctggcc
     5641 agtatctgaa ggaagtaaca aaaatggagc tacaaagagg cttccctaac acctaaatgt
     5701 gtaagcttgt aagaaatgtg tgtagagatg tttttaaatt gcagtgtaca gaagaaacaa
     5761 gcagtagtac tcgctttttt aggtgagtat tgcggtgtat ttcactggta ctgatggggc
     5821 atctctacca tttcaaatga ttgctctgtg aagctccctt gccattccct ttcccagcga
     5881 gcttgcacgc tctttgaaat tttgaatgga taaggaacat ttaaaacatc aagtatgatg
     5941 gagattatgt tactgccttg gatggtgctt gtgaaattcc tacttacctt ccagctggat
     6001 tttctgtgtc caaaattaat tattgtgagc attttatatc aacagtatct gtcgctcatt
     6061 gctggaaggt gtcaagccct tccacttgag ttgcatgatt gaatccttca aatagctctt
     6121 tccttggtca ctgtcatcct tgtttgcagg ggatgatggg tttggtgcat agtcatcatc
     6181 gccagtaagg gggttaaagc tgactgaggg gcaaagatgc tgtgcggccg actgcctgcc
     6241 cctggcttgc acaggcctca cagtcactgg agtcacaggg agctgggccc tgacccacag
     6301 gctctgactc agtctgtctg ggtggagtcc aagagtttgc atttctcact ggtttccagg
     6361 tgattctggt gctgccagtc tggggaccac atttcgagaa ccactgtgct taactgtcag
     6421 ggagggcaac ccaggcagtg ggctgggagt attgtcagca ttatccctat tctactgcct
     6481 gtggttgatc gggtcttgtg ggtcctatgg ttcgtcagag aatacacttg cccagagtat
     6541 attaactgct actttctgtt acaaaaatgc tgccagaacc cactaggacg gctgtaatca
     6601 gaaggatgga caataacaag tgttggtgag gatgtagaga actggagcca tcatacactg
     6661 ctggtgggaa tgtcaagtgt tccagctgct ttggaaaaca gtctggcagt tcctcaaaaa
     6721 gttaaaatag agttaccgtg acccagcagt tcccctcccc agtatttacc tgagagaatt
     6781 gaaaacatgg ccatgaaaga acttgtacgt gaatgttcat agcagcatta ctcgtgagag
     6841 acaaaagatg aaaataaccc aaatgtccac ccactggtga atagataaag aaaacaaaga
     6901 aaatgtggtc catccattcc atgaggtgtt gttcagccat aaaaaggaaa ataagtactg
     6961 atacatgctc cgacatggat ggatatgcta agtgaaagaa gctgtcacaa aagaccacat
     7021 ttgtacgatt tcatttatat gaaatgtcca gagtcgagaa acccatagac atagaaagta
     7081 aattagtagt ttctagaggc tggcaggggc ttggggttga agaatgggga gtgcttgctt
     7141 gtgggtacag ggtttctttg ggggtgatga aaatgtccag aaattatgca gtggtgatgg
     7201 ttgcacaact ctgaatatac taggtaacac tgaattgtac aaaaggggaa aattctatgg
     7261 tatgtgaatc atatctcaat aaagctggaa acccccccca cctctgccac aggaccatgt
     7321 acctcttatg acccttttca cttgatgtag tagttactgt gtggagttgc tgatttgaaa
     7381 ttaccctatt catgttgtaa ttctggtttg agggttttct cggtttggtg actttgcatt
     7441 gggagcaaaa cattgtttca aatgaatttg ttttaaaata ttgatgatag agctaaaatg
     7501 aacagcatgg tataagggag gggatgctgt caggatcaga agacctgagt tatcgtccca
     7561 gctctgcctc tgactcatgt gtggcctcag acaaacccat ttctaaatga gagagttggt
     7621 gagaggcatt tccaacttct gctctgcctc tgagttctcc ctgatgcttt atcatgccag
     7681 tgccagacac caaactggcc ctggcccttc aggttcaatc ttcagtacca acagaactgc
     7741 aaaatcataa gaggaactta catgctcact aaaacctagg tgagttcatt gcccacatat
     7801 tcagcaaaag tataatcagg agaagaggca gatgaggtga gccattctca aagcacagcg
     7861 catgatttag tggtctctct actaacctta ttccaagttt tttttttttt taatcaccat
     7921 ggggacatca ctggaggtcc agtggttaag actctacact tccactgcaa agggcaaggg
     7981 tttgatccct ggtcagggaa ctaagatcct gcatgccaca tggtgtggcc aaaaaaaaag
     8041 aaaaaaaatg atcactacca tgtggtttat agtgtgtttt ctctttatct catgtgatgc
     8101 tacaaacacc ccaagcttcg gagagcctcc agggattgta aatcgttcag cagagacagg
     8161 acacgtgagt gtccttaaaa cgaggcacat gaggtgggag tggggtggaa agcttatctc
     8221 acgcaggatg tgttaaaaag gtcctctatg tatccaccct ccccccatta ttttaaaaat
     8281 aaatgtcagt ttcagtaatc a
//
LOCUS       XM_032618337            8146 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein O-mannose kinase (POMK),
            transcript variant X6, mRNA.
ACCESSION   XM_032618337
VERSION     XM_032618337.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8146
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8146
                     /gene="POMK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746716"
     CDS             4202..5254
                     /gene="POMK"
                     /codon_start=1
                     /product="protein O-mannose kinase isoform X2"
                     /protein_id="XP_032474228.1"
                     /db_xref="GeneID:116746716"
                     /translation="METRPQGGRKGPPPRDVPPVVGLLLSMALMNALLYLCLDWLFIS
                     PRRSTEDPTRCPYGHFRMGPTSNCSPWLSCEQLRTEVRQMKRVGEGAVKRVFLSEWKE
                     RKVALSRLTRLEVRDDFLHGLRMLKSLQSEHVVTLLGYCEADNSILTEYHPLGSLSSL
                     EATLNLSKYRSTNTWQHRLQLALGYVAIIDFLHRSPLGTLVMCDSSDLPKTLSQYLLT
                     ANFSIVLNDLDALPLVNRSTGALVKCGHRELRGDFVAPEQLWPYGEDVPFHDDLMPAY
                     DEKIDIWKIPDVSSFLLGHVEGSDMVRFHLFDIHKACKSQTPAERPTAQDVLDTYQKV
                     LNLLRDTATSQTREML"
     misc_feature    4463..5185
                     /gene="POMK"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(4463..4471,4478..4480,4484..4486,4517..4519,
                     4604..4606,4646..4657,4820..4822,4829..4834,4847..4849,
                     4877..4882)
                     /gene="POMK"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270455"
ORIGIN      
        1 attcctggag aaaatatact ttgtgggtat ttaacatttt acatgtcagt ttttgttttt
       61 agactccaaa aatctctgaa tttatatttg aaattttcat aaagtgtcat ccctatgtag
      121 acaatttcaa aggtgtcatg aaaaaaaatt gtacagaaaa gttttcataa gatggcattt
      181 actctcagaa actaccttgt cagtgtaccc aaattgatta gattcagggc tgctgacttg
      241 acaaagctcg taagagactt taataaaaag cataatggca gtttactaat ttacactgag
      301 aaatgtaaca ggcagaccaa gcaattgcag cagcctagcc acttagcatt ttctgcctga
      361 agtttaacta ggtggcaatt catttatcaa aaggttgctt agtgagtatg gaatcaggtg
      421 aggaggcccc atggttcaag tgtataatga cttattttga tgatcctaat gagggtcatc
      481 tcctgatggg cagctgaata cagagacctg gcagtgcact tttctcattg gactaacaat
      541 taaaatgtgg tctgtggagg ggctgttagc tcaaaatcat ttatccaatg atactttcac
      601 tgtgttgcta tctgcactgc tggcgcataa acagtgggtc aaactgctgg tgccttagca
      661 caagtcaagg cagtggtact gagtactcat tgttttcttc actgccatgc attcactgaa
      721 caatgtactt gatgaatcag taattatata ttttagtcac agtactcacg gtcttttcag
      781 tattttgtgt gactgaatgg aagtatgcct aaactttttg cttgtcttga agaaaagcat
      841 ttgtgcagtt gtgtaagttg tggcccaaac aggccactct tcttggaatg ccatttgtac
      901 ttgaacaact gagtgtttat tgccaatcat aaaatttgag cttttgaggg aaaattttaa
      961 tctaccatag tcagcttgac agcctcccgc taccttctga tgaaatcaaa gtgatgatat
     1021 taatgaatta ttaatgaatt attattgaat caataatgaa tagttaaatg tatccacaat
     1081 tcgtggatcc gtatagctca atggaccaat attttccaaa tgacccatct atgatattat
     1141 catgaatgca taaacaatcc attcacatta ccagatgtaa caacacaaaa agtacattga
     1201 tagagttgca gattccacac tgcaactaac ctttgagaaa ccaccacttg tcgaattttg
     1261 gtgtagtatt ggagaatatc cacaacttct taaaagactc ctaaaatact ccctttctga
     1321 ctatatatct gtgtgtatga gtggattttc ttcatgtact tcaaccaaaa acaccatatt
     1381 ccaacagatt gaatatagaa gcagatagga gaatctggaa atcttctatt aagtcagacg
     1441 aaagagattt gcaaaaatgt aaaactgcca ttttcctggt tggttttttg gaaaatataa
     1501 gtttcataaa atgttatttt tgttaacatg taatgggttt attgctttat taatgaatta
     1561 aaattttaaa atctcaaata tagcaaatag cactagcttg gacccacata aaggaaatct
     1621 ggagctagag gagagagtaa gatctctgcc ttcagggatc ccaattttga gagagaccaa
     1681 cagtatgcta cacctctcag taccctgaaa atgtttatta gcttgttgaa gaagtactat
     1741 ttgggaacac agaagcagga gggattatct tcctgatgga gtcaggaagg gctcacaaag
     1801 gaggacaaat ttcgttaatt acatccttta gtgaggcctt caactcaatt ttttaattgg
     1861 ttatatccca aatattaact tagtaagaga gtccaaaagt tttccctctg gaagttatgt
     1921 tataaaaagc agtgtttttc aaaaaaaaaa aaaaggcaat gtttttcaaa ttgggttgta
     1981 acccattaat gggcaagtca gtgtgtatcg acaagcttta aaaacaaaaa agtatatata
     2041 atagaacttt caacttcact gaattctctc acattttatt tctttccttc tacttgactt
     2101 ggtccactct agcttttttg cctagcaatt attgtgatat aatcgacaag taacactgtg
     2161 taagcttaag acatacagta tgatgatttg atacatattg tgaaatgact accacgttaa
     2221 gattagtgac cagatccttc acctcacact tgtgtgtgtg agtgtgtgat ctctcttagc
     2281 aaatttctag tatattctaa ttttttaagg tggaagctta gattgatcca agcttagatg
     2341 atgatttttc cccaatataa gcatttaatg ctatacattc tatttttatt cagctcaaaa
     2401 tattttctaa tttcccttct tgagacatcc tctttcagtc agggattatt tagaagtgta
     2461 tcatttaatt gccaagtgat cagagatttt cctgttattc tctattatta ttatttagtg
     2521 gttactctag gaattataaa atacgtattc aactttttac agcctattta tatcaatatt
     2581 ttatcacttc aattggcatg tagaaacctt accacggtat aggtctcctc acccccacca
     2641 tttatgctat agctgtctta tatattacct atacttacat tgaaaacccc atcagacaat
     2701 ttttttgcat tcaaccacca gacatatttt aaagaactca agaatgtagt ctattacatt
     2761 taccaagaga tttactattt ttgttacttt tctttcattc ctgatgttcc aagtttcctt
     2821 ctggtataat tttccttttg cctgaagaaa tttctttcag cagttctttt agattagttc
     2881 tgctggttgc aaattctgtt tagttttcct cagctgagaa ggtctttatt tcatcttcat
     2941 tcctgaagga tgttttcgct ggatacagaa ttctgagttt ccagttcttt cagcacttga
     3001 gaaatgtcac ttcctgtcat tagaatggtc gttcacatac atgtcatctc tctctggctg
     3061 cttgcaaaat ttttgtcttt agtaatttga ttttgatgtg tctggccatg gatgtctttg
     3121 gatttaccct atttgctcag cttcttgaat ctgtaggtgt caccaaactt gggatatctt
     3181 cagccattac ttcttcaaac attttttcag ccctttctct tctgtgggat tctcaatgca
     3241 agaatgttag accttttgtt attgtcccga aggtgccttt tgttcttttt tttctttctt
     3301 tttccttttt ttccctctgt tggtcagatt agatcatttc tattaatctg tcttcaaatt
     3361 cactgacttt ttttctcttg tcatctccat tctactattg aaccaatcca atgagctttt
     3421 tgtcttggtt attatatttc tcagttctag acatgggcat tggaagggct gcagcctgtg
     3481 aattattgtg aagcgatggg gagttacccg aaacccactg gtaagtttaa acaccagatg
     3541 tggatggctg tggctcacga caggaactga agacacagag agatgctgag gtgcgtgcgt
     3601 gtgttttgtg cgttcctacg cagcgcggct cagctgggtg catttttccg cattcaccta
     3661 gtgtttttcc aggatgaagt tacgcataaa caaacgtgga cgtctagcac gggcaccccc
     3721 gggggcctgt aaaagcacag agcgctggcc ccagccccgt ctgggttgga gcccagaatt
     3781 cgcactcctg acaagttccc tggagccgtg aagcgtcggt acctggcctg aggaccgccc
     3841 tttggaagca cggccttgcg ctgagcggga gctttctgca gcgtctagat cgtacaagtc
     3901 ctctccgcac cggcacccgc gcccggctgc gcgtccggac taaacacgtc accgccctca
     3961 cgcgctggca gagaagcagc cgccacagga gccggccggg tgcgccgacg ctgcttccgg
     4021 gtgcactccg acactggctt tgcgttccgg cgaccgacct ccgggtgcgc ggcggcggga
     4081 ggacgacact agggcgcacc ctcgcgctgg tcctgctggg cgcgcttccg gccacgcagg
     4141 cgcaggaggc cgcgagccag accgggaacc gggactgcag gagctcgcag aagccagcac
     4201 catggagacg aggccccagg ggggcaggaa agggcccccg cccagggacg tgcccccagt
     4261 ggtgggactg ctgctgtcca tggccctcat gaacgccctc ctctacctct gcctcgactg
     4321 gctcttcatc tcaccccggc gctccacgga ggaccccacg cgctgtccct acggccactt
     4381 ccggatgggg ccgacgagca actgctcccc gtggctgtcc tgcgagcagc tgaggacaga
     4441 agtgagacag atgaagcgtg tcggggaagg agccgtgaag agagtgtttc tgtccgagtg
     4501 gaaggaacgc aaggtggctt tgtcgcggct caccaggctg gaggtaagag acgacttcct
     4561 gcacggactg cggatgctga agtcgttgca gagtgagcac gtcgtcacgc tgctgggcta
     4621 ctgtgaggct gacaacagca tcctcaccga gtaccacccc ttaggctccc tgagcagcct
     4681 ggaggcgacg ctgaacctct ccaagtaccg gagcacgaac acatggcagc acaggctgca
     4741 gctggccctg ggctacgtgg ccatcatcga cttcctgcac cgtagccccc tgggcacgct
     4801 ggtcatgtgc gactccagcg acctgcccaa gacgctgtcc cagtacctgc tgaccgccaa
     4861 cttcagcatc gtgctcaacg acctggacgc cctgcccctg gtgaaccgca gcaccggggc
     4921 cctggtgaag tgcggccacc gggagcttcg cggggacttc gtggccccag agcagctgtg
     4981 gccctacgga gaggacgtgc cttttcacga cgacctcatg cccgcgtatg acgagaagat
     5041 cgacatctgg aagattccag acgtctccag tttccttctg gggcacgtag aagggagcga
     5101 catggtccga ttccacttgt ttgatattca caaggcgtgt aagagccaga cgcctgcaga
     5161 gagacccacc gctcaggacg tcctggacac ttaccagaag gttttgaatc tactcagaga
     5221 caccgcgaca tctcagacaa gagagatgct gtaaaaacca gtgcagtcgg tgaggtatgg
     5281 gagtcaagga tcggatggaa gagttacagt ggttccgctc tgatggtgag gtttttgctg
     5341 ctttgacccg tggttcttcc atccgcgtgc acaagtgagc ggctccctat cctggctgcc
     5401 tggcaggagt tactaagcca gagcaaaccg ggcttgatgg gagcctggct tcaggcaaag
     5461 gtgcaaagaa gcagcgagtc tggccagtat ctgaaggaag taacaaaaat ggagctacaa
     5521 agaggcttcc ctaacaccta aatgtgtaag cttgtaagaa atgtgtgtag agatgttttt
     5581 aaattgcagt gtacagaaga aacaagcagt agtactcgct tttttaggtg agtattgcgg
     5641 tgtatttcac tggtactgat ggggcatctc taccatttca aatgattgct ctgtgaagct
     5701 cccttgccat tccctttccc agcgagcttg cacgctcttt gaaattttga atggataagg
     5761 aacatttaaa acatcaagta tgatggagat tatgttactg ccttggatgg tgcttgtgaa
     5821 attcctactt accttccagc tggattttct gtgtccaaaa ttaattattg tgagcatttt
     5881 atatcaacag tatctgtcgc tcattgctgg aaggtgtcaa gcccttccac ttgagttgca
     5941 tgattgaatc cttcaaatag ctctttcctt ggtcactgtc atccttgttt gcaggggatg
     6001 atgggtttgg tgcatagtca tcatcgccag taagggggtt aaagctgact gaggggcaaa
     6061 gatgctgtgc ggccgactgc ctgcccctgg cttgcacagg cctcacagtc actggagtca
     6121 cagggagctg ggccctgacc cacaggctct gactcagtct gtctgggtgg agtccaagag
     6181 tttgcatttc tcactggttt ccaggtgatt ctggtgctgc cagtctgggg accacatttc
     6241 gagaaccact gtgcttaact gtcagggagg gcaacccagg cagtgggctg ggagtattgt
     6301 cagcattatc cctattctac tgcctgtggt tgatcgggtc ttgtgggtcc tatggttcgt
     6361 cagagaatac acttgcccag agtatattaa ctgctacttt ctgttacaaa aatgctgcca
     6421 gaacccacta ggacggctgt aatcagaagg atggacaata acaagtgttg gtgaggatgt
     6481 agagaactgg agccatcata cactgctggt gggaatgtca agtgttccag ctgctttgga
     6541 aaacagtctg gcagttcctc aaaaagttaa aatagagtta ccgtgaccca gcagttcccc
     6601 tccccagtat ttacctgaga gaattgaaaa catggccatg aaagaacttg tacgtgaatg
     6661 ttcatagcag cattactcgt gagagacaaa agatgaaaat aacccaaatg tccacccact
     6721 ggtgaataga taaagaaaac aaagaaaatg tggtccatcc attccatgag gtgttgttca
     6781 gccataaaaa ggaaaataag tactgataca tgctccgaca tggatggata tgctaagtga
     6841 aagaagctgt cacaaaagac cacatttgta cgatttcatt tatatgaaat gtccagagtc
     6901 gagaaaccca tagacataga aagtaaatta gtagtttcta gaggctggca ggggcttggg
     6961 gttgaagaat ggggagtgct tgcttgtggg tacagggttt ctttgggggt gatgaaaatg
     7021 tccagaaatt atgcagtggt gatggttgca caactctgaa tatactaggt aacactgaat
     7081 tgtacaaaag gggaaaattc tatggtatgt gaatcatatc tcaataaagc tggaaacccc
     7141 ccccacctct gccacaggac catgtacctc ttatgaccct tttcacttga tgtagtagtt
     7201 actgtgtgga gttgctgatt tgaaattacc ctattcatgt tgtaattctg gtttgagggt
     7261 tttctcggtt tggtgacttt gcattgggag caaaacattg tttcaaatga atttgtttta
     7321 aaatattgat gatagagcta aaatgaacag catggtataa gggaggggat gctgtcagga
     7381 tcagaagacc tgagttatcg tcccagctct gcctctgact catgtgtggc ctcagacaaa
     7441 cccatttcta aatgagagag ttggtgagag gcatttccaa cttctgctct gcctctgagt
     7501 tctccctgat gctttatcat gccagtgcca gacaccaaac tggccctggc ccttcaggtt
     7561 caatcttcag taccaacaga actgcaaaat cataagagga acttacatgc tcactaaaac
     7621 ctaggtgagt tcattgccca catattcagc aaaagtataa tcaggagaag aggcagatga
     7681 ggtgagccat tctcaaagca cagcgcatga tttagtggtc tctctactaa ccttattcca
     7741 agtttttttt ttttttaatc accatgggga catcactgga ggtccagtgg ttaagactct
     7801 acacttccac tgcaaagggc aagggtttga tccctggtca gggaactaag atcctgcatg
     7861 ccacatggtg tggccaaaaa aaaagaaaaa aaatgatcac taccatgtgg tttatagtgt
     7921 gttttctctt tatctcatgt gatgctacaa acaccccaag cttcggagag cctccaggga
     7981 ttgtaaatcg ttcagcagag acaggacacg tgagtgtcct taaaacgagg cacatgaggt
     8041 gggagtgggg tggaaagctt atctcacgca ggatgtgtta aaaaggtcct ctatgtatcc
     8101 accctccccc cattatttta aaaataaatg tcagtttcag taatca
//
LOCUS       XR_004347852            6986 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein O-mannose kinase (POMK),
            transcript variant X7, misc_RNA.
ACCESSION   XR_004347852
VERSION     XR_004347852.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6986
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6986
                     /gene="POMK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746716"
     misc_RNA        1..6986
                     /gene="POMK"
                     /product="protein O-mannose kinase, transcript variant X7"
                     /db_xref="GeneID:116746716"
ORIGIN      
        1 aaaaaattcc tggagaaaat atactttgtg ggtatttaac attttacatg tcagtttttg
       61 tttttagact ccaaaaatct ctgaatttat atttgaaatt ttcataaagt gtcatcccta
      121 tgtagacaat ttcaaaggtg tcatgaaaaa aaattgtaca gaaaagtttt cataagatgg
      181 catttactct cagaaactac cttgtcagtg tacccaaatt gattagattc agggctgctg
      241 acttgacaaa gctcgtaaga gactttaata aaaagcataa tggcagttta ctaatttaca
      301 ctgagaaatg taacaggcag accaagcaat tgcagcagcc tagccactta gcattttctg
      361 cctgaagttt aactaggtgg caattcattt atcaaaaggt tgcttagtga gtatggaatc
      421 aggtgaggag gccccatggt tcaagtgtat aatgacttat tttgatgatc ctaatgaggg
      481 tcatctcctg atgggcagct gaatacagag acctggcagt gcacttttct cattggacta
      541 acaattaaaa tgtggtctgt ggaggggctg ttagctcaaa atcatttatc caatgatact
      601 ttcactgtgt tgctatctgc actgctggcg cataaacagt gggtcaaact gctggtgcct
      661 tagcacaagt caaggcagtg gtactgagta ctcattgttt tcttcactgc catgcattca
      721 ctgaacaatg tacttgatga atcagtaatt atatatttta gtcacagtac tcacggtctt
      781 ttcagtattt tgtgtgactg aatggaagta tgcctaaact ttttgcttgt cttgaagaaa
      841 agcatttgtg cagttgtgta agttgtggcc caaacaggcc actcttcttg gaatgccatt
      901 tgtacttgaa caactgagtg tttattgcca atcataaaat ttgagctttt gagggaaaat
      961 tttaatctac catagtcagc ttgacagcct cccgctacct tctgatgaaa tcaaagtgat
     1021 gatattaatg aattattaat gaattattat tgaatcaata atgaatagtt aaatgtatcc
     1081 acaattcgtg gatccgtata gctcaatgga ccaatatttt ccaaatgacc catctatgat
     1141 attatcatga atgcataaac aatccattca cattaccaga tgtaacaaca caaaaagtac
     1201 attgatagag ttgcagattc cacactgcaa ctaacctttg agaaaccacc acttgtcgaa
     1261 ttttggtgta gtattggaga atatccacaa cttcttaaaa gactcctaaa atactccctt
     1321 tctgactata tatctgtgtg tatgagtgga ttttcttcat gtacttcaac caaaaacacc
     1381 atattccaac agattgaata tagaagcaga taggagaatc tggaaatctt ctattaagtc
     1441 agacgaaaga gatttgcaaa aatgtaaaac tgccattttc ctggttggtt ttttggaaaa
     1501 tataagtttc ataaaatgtt atttttgtta acatgtaatg ggtttattgc tttattaatg
     1561 aattaaaatt ttaaaatctc aaatatagca aatagcacta gcttggaccc acataaagga
     1621 aatctggagc tagaggagag agtaagatct ctgccttcag ggatcccaat tttgagagag
     1681 accaacagta tgctacacct ctcagtaccc tgaaaatgtt tattagcttg ttgaagaagt
     1741 actatttggg aacacagaag caggagggat tatcttcctg atggagtcag gaagggctca
     1801 caaaggagga caaatttcgt taattacatc ctttagtgag gccttcaact caatttttta
     1861 attggttata tcccaaatat taacttagta agagagtcca aaagttttcc ctctggaagt
     1921 tatgttataa aaagcagtgt ttttcaaaaa aaaaaaaaag gcaatgtttt tcaaattggg
     1981 ttgtaaccca ttaatgggca agtcagtgtg tatcgacaag ctttaaaaac aaaaaagtat
     2041 atataataga actttcaact tcactgaatt ctctcacatt ttatttcttt ccttctactt
     2101 gacttggtcc actctagctt ttttgcctag caattattgt gatataatcg acaagtaaca
     2161 ctgtgtaagc ttaagacata cagtatgatg atttgataca tattgtgaaa tgactaccac
     2221 gttaagatta gtgaccagat ccttcacctc acacttgtgt gtgtgagtgt gtgatctctc
     2281 ttagcaaatt tctagtatat tctaattttt taaggtggaa gcttagattg atccaagctt
     2341 agatgatgat ttttccccaa tataagcatt taatgctata cattctattt ttattcagct
     2401 caaaatattt tctaatttcc cttcttgaga catcctcttt cagtcaggga ttatttagaa
     2461 gtgtatcatt taattgccaa gtgatcagag attttcctgt tattctctat tattattatt
     2521 tagtggttac tctaggaatt ataaaatacg tattcaactt tttacagcct atttatatca
     2581 atattttatc acttcaattg gcatgtagaa accttaccac ggtataggtc tcctcacccc
     2641 caccatttat gctatagctg tcttatatat tacctatact tacattgaaa accccatcag
     2701 acaatttttt tgcattcaac caccagacat attttaaaga actcaagaat gtagtctatt
     2761 acatttacca agagatttac tatttttgtt acttttcttt cattcctgat gttccaagtt
     2821 tccttctggt ataattttcc ttttgcctga agaaatttct ttcagcagtt cttttagatt
     2881 agttctgctg gttgcaaatt ctgtttagtt ttcctcagct gagaaggtct ttatttcatc
     2941 ttcattcctg aaggatgttt tcgctggata cagaattctg agtttccagt tctttcagca
     3001 cttgagaaat gtcacttcct gtcattagaa tggtcgttca catacatgtc atctctctct
     3061 ggctgcttgc aaaatttttg tctttagtaa tttgattttg atgtgtctgg ccatggatgt
     3121 ctttggattt accctatttg ctcagcttct tgaatctgta ggtgtcacca aacttgggat
     3181 atcttcagcc attacttctt caaacatttt ttcagccctt tctcttctgt gggattctca
     3241 atgcaagaat gttagacctt ttgttattgt cccgaaggtg ccttttgttc ttttttttct
     3301 ttctttttcc tttttttccc tctgttggtc agattagatc atttctatta atctgtcttc
     3361 aaattcactg actttttttc tcttgtcatc tccattctac tattgaacca atccaatgag
     3421 ctttttgtct tggttattat atttctcagt tctagacatg ggcattggaa gggctgcagc
     3481 ctgtgaatta ttgtgaagcg atggggagtt acccgaaacc cactggtaag tttaaacacc
     3541 agatgtggat ggctgtggct cacgacagga actgaagaca cagagagatg ctgaggtgcg
     3601 tgcgtgtgtt ttgtgcgttc ctacgcagcg cggctcagct gggtgcattt ttccgcattc
     3661 acctagtgtt tttccaggat gaagttacgc ataaacaaac gtggacgtct agcacgggca
     3721 cccccggggg cctgtaaaag cacagagcgc tggccccagc cccgtctggg ttggagccca
     3781 gaattcgcac tcctgacaag ttccctggag ccgtgaagcg tcggtacctg gcctgaggac
     3841 cgccctttgg aagcacggcc ttgcgctgag cgggagcttt ctgcagcgtc tagatcgtac
     3901 aagtcctctc cgcaccggca cccgcgcccg gctgcgcgtc cggactaaac acgtcaccgc
     3961 cctcacgcgc tggcagagaa gcagccgcca caggagccgg ccgggtgcgc cgacgctgct
     4021 tccgggtgca ctccgacact ggctttgcgt tccggcgacc gacctccggg tgcgcggcgg
     4081 cgggaggacg acactagggc gcaccctcgc gctggtcctg ctgggcgcgc ttccggccac
     4141 gcaggcgcag gaggccgcga gccagaccgg gaaccgggac tgcaggtagg ggcggcgggc
     4201 cgggggaggc gtcggcaggt aggggcggcg ggcgggcgcg gaggtagctg ggccgcgtcc
     4261 tgcccggcgc ccgagctggg cttgagccga cggacacgcc gccgggacag gcttcagctc
     4321 ctgcctctgt tgatgccgcg ctgccaccgc ctccaggtct ggaatcgtct gctgcccctt
     4381 tttaaaaagc agggtttagc cgtgttcttt ggtggtcttg tcttctccac ccttgcttga
     4441 cctttactat agaaccttaa ggctaagcag gcatccggaa tatttaaaat aattaatgta
     4501 cctgtgcttt gttggcaaaa tgggattcta accaaaattg tatgggcggg ggtgggggca
     4561 ctaattcatc atttcttctc tggttggttg tgtaaattat tctgtagctg gtaaaaacca
     4621 attttgttcc attgcttttc tttcttttta aattaagctg tgagtgtata gcagtgggaa
     4681 ccactttttt cctttgccag ttctttctta ttgtcagaaa tcctttgtgt ctaaacagtg
     4741 cctgaatttc tcctacccac ctggaccttt aattgttatt tcttaatttg tagaagcttt
     4801 cagtgtcgtt ttgcttattt ctgggcgaga acatttcctc agccatacag cctcttccct
     4861 aactctggac aacatactac agaaatatgc ctttaaaaga aaaaggaggg gacttccctg
     4921 gtggtccagt agtagagaat cctccttaca atgcagggga tgcgggttcg atccctggtc
     4981 agggaactaa gatcccacat gccgcggggc aactaagccc gcacaccaca gctggagagc
     5041 cttcttgccg caaagtgcaa agcccacatg ccctggagcc tgggcaccac aactagaaag
     5101 acgcccgcgg ccgcaatgaa agatcctgca tgccacaact aagacccgat gcagccaaaa
     5161 acaaattaag taaataataa atctttaaaa aaaaagacca taaggtgata gagtgggtga
     5221 atgacttctt taagaagtgg gtgggacttc cctgatggca cagtggttaa gaatctgcca
     5281 gccaacgcag gggacacggg ttcgagccct ggtccgggaa gatcccacat gtcgcagagt
     5341 aactaagccc atgtgccaca actactgagc ccctgctccg caacaaggga agccaccaca
     5401 atgagaagcc cgggcattgc aacgaagagt agcccctgct cgccgcaact agataaagtc
     5461 cgtgcgcagc aatgaaaacc caacacagcc aaaaataaat aaaatgattt aaaaaaaaaa
     5521 agaccctatg taaaccttcc acatgtacac aggaagtgtg tgcaaacctg aatcaccagc
     5581 tgcggtatag tcaatccaaa agagcgaagt agagcatcat gtatctgctt cgataaacct
     5641 caaaaacata atgctgggct tttaaaaaag caagtcataa gaggactttg tgtcctgcat
     5701 ccctgataca gagggattct acgccatttt atctgaggga cttgagcatc cgcagatgtt
     5761 ggttttcgca gggggtcctg gaaccaatcc cctgcggtta ctgagggacg aacagtacaa
     5821 cactgcttgt attaatataa agtttgaaaa cgtacgtgta ttatgtgttg ttatttatgg
     5881 gcacatactc atgtggtgag aataaaaagc acgcatggaa attattaaag ttcagcttgc
     5941 acccccacgt cacgtgtgtt aacacagatg tctgggctcc acttcagagt ttctggtgca
     6001 gtaggtgtgg ggcaaggact taagaacctg catttctcag aagttccagg tggtgctgcg
     6061 gcaggtacag ggaccacagt ttgagaacta ctgacatacc aactcgagga tggggactat
     6121 ttcttgggat ggagcagaat aggactgcga ggggcccctg gcttcaacca tgtttgtaat
     6181 aggttatttc tttaacaagg ggatgcagta ttacttgaca aagctggatg ggtgctcatg
     6241 atcttacgtt ttaactttct ttatgcttga aacatttcag gaaagaaaaa agatcctagt
     6301 cggtgaggaa aatggattgg aaaagagaaa gcagtgggag agtgcgtagg aaagcgttgc
     6361 agaagcccag gaaggtcacc ttctaagaat caggcgtcgg tggaagaagc tcaagagacc
     6421 gtgaggcctg agtagtgaac gtcgtcatca tgtccacagg agtcctggaa gatgcctgga
     6481 gggagagagg tggagagaga gatgtgggcc cggaatctcg gtgaggaagg aagtccccta
     6541 cacatgagcc ttcaagttgc gagctttcaa agatgcgaac ctatgttccg tcatcgtcag
     6601 gcgtgaggga aatggcagct tgccctccgt ctcctattgc tgacgaccct tcagctctac
     6661 catcccccac ctcctctccc cactccagtc agtaactctt cttgcctgtc cactcgatgc
     6721 cagcccctgt gtgccagctg ttgtactgga ctactgtact tttcagggta ctgtactgca
     6781 agattaaaca tgttttctgt attttttgtg ttttatgtat tgtttgcgtg aaaagtatta
     6841 tgaacctatt atggtacagt gctgtagccg attgtgttag tttggtacct cggctgactt
     6901 tgttggactt aacaagcact atcttggaat ggaactcgtt cgtaggtagt ggacttgctg
     6961 tagctttaga tggaatataa tctaga
//
LOCUS       XM_032618338            1781 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus N-acylsphingosine amidohydrolase 1
            (ASAH1), transcript variant X1, mRNA.
ACCESSION   XM_032618338
VERSION     XM_032618338.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1781
                     /gene="ASAH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746719"
     CDS             110..1309
                     /gene="ASAH1"
                     /codon_start=1
                     /product="acid ceramidase isoform X1"
                     /protein_id="XP_032474229.1"
                     /db_xref="GeneID:116746719"
                     /translation="MLVWSRLTFVLLSVTVTCSVAQHVPPVGELWTEDCRKSTYPPSG
                     PTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMINAFEPSGKIVQLVD
                     QKLPGLLGNFPGPFEEEMKGIAAVTEIPLGEIISFNIFYEFFTICTSIITEDKEGHLL
                     HARNMDFGVFLGWNVNNNTWVVTEELKPLTVNLDFQRNNKTVFKAAGFAGYVGMLTGF
                     KPGLLSLTLNERFSTNGGFMGVIEWILGKKDAKWIGFIIRSVLENSTSYEEAKTILTN
                     TKVLAPAYFILGGNKSGEGCVITRDREQSLDIYELDPKQGIWYVVQTNYDRWKNPFFL
                     DNRRTPAKMCLNQTTQENISFATIYDVLSTKPVLNKLTVYTALIDVTKGQFETYLRDC
                     PDPCIGW"
     misc_feature    254..445
                     /gene="ASAH1"
                     /note="beta subunit of N-acylethanolamine-hydrolyzing acid
                     amidase; Region: NAAA-beta; pfam15508"
                     /db_xref="CDD:464754"
     misc_feature    521..1258
                     /gene="ASAH1"
                     /note="AC_NAAA This conserved domain includes two closely
                     related proteins, acid ceramidase (AC, also known as
                     N-acylsphingosine amidohydrolase), and
                     N-acylethanolamine-hydrolyzing acid amidase (NAAA). AC
                     catalyzes the hydrolysis of ceramide to sphingosine
                     and...; Region: Ntn_AC_NAAA; cd01903"
                     /db_xref="CDD:238886"
ORIGIN      
        1 tccagcccgc gggtcacgcg gcggcggggg cgtggtctgc tctgagctca ggtggtacct
       61 tgtgcggcct cttctggcgt catttgtagc ggcgttcgca gcaggagcga tgctggtttg
      121 gagtcgccta accttcgtcc tactgagcgt gaccgtcacc tgttcggtgg cgcagcacgt
      181 gccaccggtg ggtgagctgt ggacggaaga ctgcagaaaa tcaacctatc ctccctctgg
      241 accaacctat aggggtccgg ttccgtggta cactataaat ctcgatttac caccgtacaa
      301 aagatggcat gaattgatgg ttgacaaggc accagcgcta aaagttatag tgaattccct
      361 gaaaaatatg ataaatgcat ttgagccaag tggaaaaatt gtgcagttag tggatcaaaa
      421 gttgcctggt ctacttggca actttcctgg gcctttcgag gaggaaatga aggggattgc
      481 agcagttact gaaatacctt taggagagat tatttcattc aatattttct atgaattttt
      541 taccatttgt acttcaataa taacagaaga caaagaaggt catctactac atgcacgaaa
      601 catggatttt ggagtatttc ttgggtggaa tgtaaataat aatacctggg tcgtaactga
      661 ggaactaaaa cctttaacag tgaatttgga cttccaaaga aacaataaaa ctgtcttcaa
      721 ggcggcaggc tttgctggct atgtgggcat gttaacagga ttcaaaccag gactacttag
      781 tcttacgctc aatgaacgtt tcagtacaaa tggcggtttt atgggtgtca tagaatggat
      841 tttgggaaag aaagatgcca agtggatagg gtttatcatt agatcagttc tggaaaatag
      901 cacaagttat gaagaagcca agactatatt gaccaacacc aaagtattgg ccccagcata
      961 ctttatcctg ggaggcaaca agtctgggga gggttgtgtg attacacgag acagagaaca
     1021 gtctttggat atatatgaac tcgaccccaa gcagggtata tggtatgtgg tgcaaacaaa
     1081 ttatgaccgt tggaaaaatc ccttcttcct tgataatcgc agaacacctg ccaagatgtg
     1141 tctaaaccag acaacccaag agaatatctc atttgcaacc atatacgatg tcctgtcaac
     1201 aaaacctgtc ctcaacaagc tgacggtata cacagccttg atagacgtta ccaaaggtca
     1261 atttgaaaca tacctgcggg actgcccaga cccctgtata ggttggtgag cacactcctg
     1321 gcctatagga tgcaccctgt atgacatcaa gatgggagct cacacggggc tgagaaggac
     1381 agccgtctga tcttcagaag actgagattg aggacgggct ctctttgagg tgtgagcttg
     1441 tcctgcttgg tatgtttaca attcacaggc tatttttgcc gtaatggttg atttttctta
     1501 tatgccaata actcctttta gtgaagtaca acaatcatcc agaatttact gtggttcatt
     1561 tcagtctgat tcatttgggg atgaggatgg gcaattaaaa ctgttgcggg acccactcac
     1621 ccccatggaa taaagcaaga ttctctgtga gcacagactc ctgtacatct gtgtaatagt
     1681 taaatagccc acattattca gtttttcact tttatctaca tatttgtatg tttttgtctt
     1741 ttcttcctgg ctcttactat taaacttaat ataccattgt t
//
LOCUS       XM_032618340            1768 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus N-acylsphingosine amidohydrolase 1
            (ASAH1), transcript variant X2, mRNA.
ACCESSION   XM_032618340
VERSION     XM_032618340.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1768
                     /gene="ASAH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 15 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746719"
     CDS             110..1297
                     /gene="ASAH1"
                     /codon_start=1
                     /product="acid ceramidase isoform X2"
                     /protein_id="XP_032474231.1"
                     /db_xref="GeneID:116746719"
                     /translation="MLVWSRLTFVLLSVTVTCSVAQHVPPWTEDCRKSTYPPSGPTYR
                     GPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMINAFEPSGKIVQLVDQKLP
                     GLLGNFPGPFEEEMKGIAAVTEIPLGEIISFNIFYEFFTICTSIITEDKEGHLLHARN
                     MDFGVFLGWNVNNNTWVVTEELKPLTVNLDFQRNNKTVFKAAGFAGYVGMLTGFKPGL
                     LSLTLNERFSTNGGFMGVIEWILGKKDAKWIGFIIRSVLENSTSYEEAKTILTNTKVL
                     APAYFILGGNKSGEGCVITRDREQSLDIYELDPKQGIWYVVQTNYDRWKNPFFLDNRR
                     TPAKMCLNQTTQENISFATIYDVLSTKPVLNKLTVYTALIDVTKGQFETYLRDCPDPC
                     IGW"
     misc_feature    242..433
                     /gene="ASAH1"
                     /note="beta subunit of N-acylethanolamine-hydrolyzing acid
                     amidase; Region: NAAA-beta; pfam15508"
                     /db_xref="CDD:464754"
     misc_feature    509..1246
                     /gene="ASAH1"
                     /note="AC_NAAA This conserved domain includes two closely
                     related proteins, acid ceramidase (AC, also known as
                     N-acylsphingosine amidohydrolase), and
                     N-acylethanolamine-hydrolyzing acid amidase (NAAA). AC
                     catalyzes the hydrolysis of ceramide to sphingosine
                     and...; Region: Ntn_AC_NAAA; cd01903"
                     /db_xref="CDD:238886"
ORIGIN      
        1 tccagcccgc gggtcacgcg gcggcggggg cgtggtctgc tctgagctca ggtggtacct
       61 tgtgcggcct cttctggcgt catttgtagc ggcgttcgca gcaggagcga tgctggtttg
      121 gagtcgccta accttcgtcc tactgagcgt gaccgtcacc tgttcggtgg cgcagcacgt
      181 gccaccgtgg acggaagact gcagaaaatc aacctatcct ccctctggac caacctatag
      241 gggtccggtt ccgtggtaca ctataaatct cgatttacca ccgtacaaaa gatggcatga
      301 attgatggtt gacaaggcac cagcgctaaa agttatagtg aattccctga aaaatatgat
      361 aaatgcattt gagccaagtg gaaaaattgt gcagttagtg gatcaaaagt tgcctggtct
      421 acttggcaac tttcctgggc ctttcgagga ggaaatgaag gggattgcag cagttactga
      481 aataccttta ggagagatta tttcattcaa tattttctat gaatttttta ccatttgtac
      541 ttcaataata acagaagaca aagaaggtca tctactacat gcacgaaaca tggattttgg
      601 agtatttctt gggtggaatg taaataataa tacctgggtc gtaactgagg aactaaaacc
      661 tttaacagtg aatttggact tccaaagaaa caataaaact gtcttcaagg cggcaggctt
      721 tgctggctat gtgggcatgt taacaggatt caaaccagga ctacttagtc ttacgctcaa
      781 tgaacgtttc agtacaaatg gcggttttat gggtgtcata gaatggattt tgggaaagaa
      841 agatgccaag tggatagggt ttatcattag atcagttctg gaaaatagca caagttatga
      901 agaagccaag actatattga ccaacaccaa agtattggcc ccagcatact ttatcctggg
      961 aggcaacaag tctggggagg gttgtgtgat tacacgagac agagaacagt ctttggatat
     1021 atatgaactc gaccccaagc agggtatatg gtatgtggtg caaacaaatt atgaccgttg
     1081 gaaaaatccc ttcttccttg ataatcgcag aacacctgcc aagatgtgtc taaaccagac
     1141 aacccaagag aatatctcat ttgcaaccat atacgatgtc ctgtcaacaa aacctgtcct
     1201 caacaagctg acggtataca cagccttgat agacgttacc aaaggtcaat ttgaaacata
     1261 cctgcgggac tgcccagacc cctgtatagg ttggtgagca cactcctggc ctataggatg
     1321 caccctgtat gacatcaaga tgggagctca cacggggctg agaaggacag ccgtctgatc
     1381 ttcagaagac tgagattgag gacgggctct ctttgaggtg tgagcttgtc ctgcttggta
     1441 tgtttacaat tcacaggcta tttttgccgt aatggttgat ttttcttata tgccaataac
     1501 tccttttagt gaagtacaac aatcatccag aatttactgt ggttcatttc agtctgattc
     1561 atttggggat gaggatgggc aattaaaact gttgcgggac ccactcaccc ccatggaata
     1621 aagcaagatt ctctgtgagc acagactcct gtacatctgt gtaatagtta aatagcccac
     1681 attattcagt ttttcacttt tatctacata tttgtatgtt tttgtctttt cttcctggct
     1741 cttactatta aacttaatat accattgt
//
LOCUS       XM_032618341            1894 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus N-acylsphingosine amidohydrolase 1
            (ASAH1), transcript variant X3, mRNA.
ACCESSION   XM_032618341
VERSION     XM_032618341.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1894
                     /gene="ASAH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746719"
     CDS             430..1422
                     /gene="ASAH1"
                     /codon_start=1
                     /product="acid ceramidase isoform X3"
                     /protein_id="XP_032474232.1"
                     /db_xref="GeneID:116746719"
                     /translation="MVDKAPALKVIVNSLKNMINAFEPSGKIVQLVDQKLPGLLGNFP
                     GPFEEEMKGIAAVTEIPLGEIISFNIFYEFFTICTSIITEDKEGHLLHARNMDFGVFL
                     GWNVNNNTWVVTEELKPLTVNLDFQRNNKTVFKAAGFAGYVGMLTGFKPGLLSLTLNE
                     RFSTNGGFMGVIEWILGKKDAKWIGFIIRSVLENSTSYEEAKTILTNTKVLAPAYFIL
                     GGNKSGEGCVITRDREQSLDIYELDPKQGIWYVVQTNYDRWKNPFFLDNRRTPAKMCL
                     NQTTQENISFATIYDVLSTKPVLNKLTVYTALIDVTKGQFETYLRDCPDPCIGW"
     misc_feature    634..1371
                     /gene="ASAH1"
                     /note="AC_NAAA This conserved domain includes two closely
                     related proteins, acid ceramidase (AC, also known as
                     N-acylsphingosine amidohydrolase), and
                     N-acylethanolamine-hydrolyzing acid amidase (NAAA). AC
                     catalyzes the hydrolysis of ceramide to sphingosine
                     and...; Region: Ntn_AC_NAAA; cd01903"
                     /db_xref="CDD:238886"
ORIGIN      
        1 gttcgcagca ggagcgatgc tggtttggag tcgcctaacc ttcgtcctac tgagcgtgac
       61 cgtcacctgt tcggtggcgc agcacgtgcc accgtggacg gaagactgca gaaaatcaac
      121 ctatcctccc tctggaccaa ctaaaggagg aaaatattct atagtgatca ctactgatta
      181 aatgccaatg cagtgagact actgaaataa gatggtggag aagaaggatg tgctctcact
      241 ccctcttgtg agaacaccag aataacaact agctgctgga cagtcatcaa caggaagaca
      301 ctggaattca ccaaaaaaga ccccacatcc aaagacaaag gataagccac aataagacgc
      361 tataggggtc cggttccgtg gtacactata aatctcgatt taccaccgta caaaagatgg
      421 catgaattga tggttgacaa ggcaccagcg ctaaaagtta tagtgaattc cctgaaaaat
      481 atgataaatg catttgagcc aagtggaaaa attgtgcagt tagtggatca aaagttgcct
      541 ggtctacttg gcaactttcc tgggcctttc gaggaggaaa tgaaggggat tgcagcagtt
      601 actgaaatac ctttaggaga gattatttca ttcaatattt tctatgaatt ttttaccatt
      661 tgtacttcaa taataacaga agacaaagaa ggtcatctac tacatgcacg aaacatggat
      721 tttggagtat ttcttgggtg gaatgtaaat aataatacct gggtcgtaac tgaggaacta
      781 aaacctttaa cagtgaattt ggacttccaa agaaacaata aaactgtctt caaggcggca
      841 ggctttgctg gctatgtggg catgttaaca ggattcaaac caggactact tagtcttacg
      901 ctcaatgaac gtttcagtac aaatggcggt tttatgggtg tcatagaatg gattttggga
      961 aagaaagatg ccaagtggat agggtttatc attagatcag ttctggaaaa tagcacaagt
     1021 tatgaagaag ccaagactat attgaccaac accaaagtat tggccccagc atactttatc
     1081 ctgggaggca acaagtctgg ggagggttgt gtgattacac gagacagaga acagtctttg
     1141 gatatatatg aactcgaccc caagcagggt atatggtatg tggtgcaaac aaattatgac
     1201 cgttggaaaa atcccttctt ccttgataat cgcagaacac ctgccaagat gtgtctaaac
     1261 cagacaaccc aagagaatat ctcatttgca accatatacg atgtcctgtc aacaaaacct
     1321 gtcctcaaca agctgacggt atacacagcc ttgatagacg ttaccaaagg tcaatttgaa
     1381 acatacctgc gggactgccc agacccctgt ataggttggt gagcacactc ctggcctata
     1441 ggatgcaccc tgtatgacat caagatggga gctcacacgg ggctgagaag gacagccgtc
     1501 tgatcttcag aagactgaga ttgaggacgg gctctctttg aggtgtgagc ttgtcctgct
     1561 tggtatgttt acaattcaca ggctattttt gccgtaatgg ttgatttttc ttatatgcca
     1621 ataactcctt ttagtgaagt acaacaatca tccagaattt actgtggttc atttcagtct
     1681 gattcatttg gggatgagga tgggcaatta aaactgttgc gggacccact cacccccatg
     1741 gaataaagca agattctctg tgagcacaga ctcctgtaca tctgtgtaat agttaaatag
     1801 cccacattat tcagtttttc acttttatct acatatttgt atgtttttgt cttttcttcc
     1861 tggctcttac tattaaactt aatataccat tgtt
//
LOCUS       XM_032618342            1008 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FSHD region gene 1 (FRG1), mRNA.
ACCESSION   XM_032618342
VERSION     XM_032618342.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1008
                     /gene="FRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746720"
     CDS             12..941
                     /gene="FRG1"
                     /codon_start=1
                     /product="protein FRG1"
                     /protein_id="XP_032474233.1"
                     /db_xref="GeneID:116746720"
                     /translation="MNAGIFRPSEVAVAPACQQEVEFYLGLIRERKARDSGGKHTHSA
                     AASVTATMAEYSYVKPTKLVLKGTKAKSKKKKSKEKKRKREEDEEIQLDIVGIWWTVT
                     NFGEISGTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIAL
                     KSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEA
                     KSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISK
                     EDSKILKKARKDGFLHETLLDRRAKLKADRYCK"
     misc_feature    363..932
                     /gene="FRG1"
                     /note="FRG1-like domain; Region: FRG1; pfam06229"
                     /db_xref="CDD:368803"
ORIGIN      
        1 ggacggagca aatgaacgct ggtatattta ggccctctga ggtcgccgta gccccagcct
       61 gtcaacagga agtagaattc tatttgggac tcattcggga gagaaaggcc agggattcgg
      121 gggggaaaca cacccactcc gctgctgcaa gcgtcaccgc gaccatggcc gaatactcct
      181 acgtgaagcc caccaaactc gtgctcaagg gaaccaaggc aaagagtaag aagaaaaaga
      241 gcaaagagaa gaagagaaaa agagaagaag atgaagaaat tcaacttgat attgttggaa
      301 tctggtggac agtaacaaac tttggtgaga tttcaggaac catagcgatt gaaatggata
      361 aaggaaccta catacatgca cttgacaatg gactttttac actgggagct ccacataaag
      421 aagttgatga gggtcctagt cctccagagc agtttacagc tgtcaaattg tctgattcca
      481 gaattgccct gaaatctggc tatggaaaat acctaggtat aaattcagat ggacttgttg
      541 ttgggcgttc agatgcaatt ggaccaagag aacaatggga accagtcttt caagatggga
      601 aaatggcttt actggcctca aatagctgct ttattagatg caatgaagca ggtgatatag
      661 aagcaaaaag taaaacggca ggagaagaag aaatgataaa gattagatcc tgtgctgaaa
      721 gagaaactaa gaaaaaagat gatattccag aagaagacaa aggaaatgtt aaacagtgtg
      781 aaatcaatta tgtaaagaaa ttccagagct tccaagacca caaacttaaa ataagtaaag
      841 aagacagtaa aattcttaaa aaggcccgga aagatggatt tttgcatgaa acacttctgg
      901 acaggagagc aaaattgaaa gctgatagat attgcaaatg accaggattt ttgtttctgt
      961 cgtctttttt cctgaataaa aaaaatcagt ggaagtgttt taacagaa
//
LOCUS       XR_004347853             983 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746722
            (LOC116746722), transcript variant X1, ncRNA.
ACCESSION   XR_004347853
VERSION     XR_004347853.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..983
                     /gene="LOC116746722"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746722"
     ncRNA           1..983
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746722"
                     /product="uncharacterized LOC116746722, transcript variant
                     X1"
                     /db_xref="GeneID:116746722"
ORIGIN      
        1 gaccgtggtg tttgtcggtc ccctccaccc ccccactgct ccgcgagcaa tggttgcgcc
       61 gagcccgagc tccagcccca gcttcgcgcc ggcgggtgcg gctgaggaac ttatagccga
      121 cgagttgcct cacgaagggc cgcgcccacc tccgagcttg gggctgggca ccttctccga
      181 ctcctttccc ggcccggtgc ggccgtgcag cgtccgcaaa cagcccaggg cgaagtccgc
      241 cttcgggcag ctcgatacca aaagcccacg aaacgggcgc aagccacgag ggtctcaaaa
      301 cgcggcgtag cacgcgaacg cgacccgtct ttgcgctcta aggagggcag ggccgaagaa
      361 agagtaagct attagtctcc attgctgctg gcattcatgc tgtaaacttg aaaggagctg
      421 cctaaggatg aataggtact gtggacagca cagaggagag aaggaaagaa actgggtctt
      481 tatgacatta agctgataga tgaccgaaca cagagcctgt ccaacaactg gactcttaat
      541 tatggctttg gtttcacctt gaaaacatcc tctctgaaca tcagaagtgc atttcatccc
      601 tgaacggtat attaacttcc aacatttctg acttccagtc atgaggattt taaaaccagt
      661 tgtatatagc actgaggctt ttcactttta atggtgcatt cagaaggcca gctttctcca
      721 ttttctatgc tatcttcatc ccattaacta ctatcagctc tgatacaaac caccccttct
      781 tgaaaaaaag aaccaaatac taagttgctt cttgcctctt aatgaaagta ttcagatgat
      841 gtaggtaaac catactaaga cagaatgtgt tgactcctgg tgtatatttt cccccaaacc
      901 atcactctaa ccagtctttt acttccatta aggttggctg gtggctttta gcttggtccc
      961 aaacagtgag acacaataca ggg
//
LOCUS       XR_004347854             616 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746722
            (LOC116746722), transcript variant X2, ncRNA.
ACCESSION   XR_004347854
VERSION     XR_004347854.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..616
                     /gene="LOC116746722"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746722"
     ncRNA           1..616
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746722"
                     /product="uncharacterized LOC116746722, transcript variant
                     X2"
                     /db_xref="GeneID:116746722"
ORIGIN      
        1 gaccgtggtg tttgtcggtc ccctccaccc ccccactgct ccgcgagcaa tggttgcgcc
       61 gagcccgagc tccagcccca gcttcgcgcc ggcgggtgcg gctgaggaac ttatagccga
      121 cgagttgcct cacgaagggc cgcgcccacc tccgagcttg gggctgggca ccttctccga
      181 ctcctttccc ggcccggtgc ggccgtgcag cgtccgcaaa cagcccaggg cgaagtccgc
      241 cttcgggcag ctcgatacca aaagcccacg aaacgggcgc aagccacgag ggtctcaaaa
      301 cgcggcgtag cacgcgaacg cgacccgtct ttgcgctcta aggagggcag ggccgaagaa
      361 agagtaagct attagtctcc attgctgctg gcattcatgc tgtaaacttg aaaggagctg
      421 cctaaggatg aataggtact gtggacagca cagaggagag aaggaaagaa actgggtctt
      481 tatgacatta agctgataga tgaccgaaca cagagcctgt ccaacaactg gactcttaat
      541 tatgcctcca atttgtgatg ggctttggaa gaagtgtgaa gttctagaaa aaggactggg
      601 tcaaggacct agggta
//
LOCUS       XR_004347855            1721 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746723
            (LOC116746723), ncRNA.
ACCESSION   XR_004347855
VERSION     XR_004347855.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1721
                     /gene="LOC116746723"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746723"
     ncRNA           1..1721
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746723"
                     /product="uncharacterized LOC116746723"
                     /db_xref="GeneID:116746723"
ORIGIN      
        1 aaaaaggatt ctttattgat gacacatgat gaaaatcatc caggaaaatg gcatgagtat
       61 aggcgatcct gagtggagat tactctaaaa gaagacaaga ttcagtggga aaccggtgtc
      121 tacggacttc tttaccattg aaataggaca gaattataaa taatggcttc aaatggaaaa
      181 acagaaaagt tagctttgct tgggtcagcg ttttgaacca gcacctgttt tcttctttga
      241 ttactgagca gctcagtatg taacaagttc agaagcagaa gctatgtcat aataatacat
      301 gatgtgagta taagcaatta accagccata ctatgtatgt ctcgtaccac agtttcatgc
      361 ttgactagtt atgccttcct ctccagtatc atctaatcac aaggagacca aagactacaa
      421 tgattaaata agtaaatttt taatggcaga aactaagtca aatatctatt tagaatggag
      481 accatttctc ttccctcctt tagctgcctc accacctagc ccattattcc atcacagtgg
      541 gcttctgttg tccaactaat ataacttatc acactcttca tttggttttg actttgtaaa
      601 cttttgcaga gtgagtgaaa acctttattt gggttttcct acttgaaatt atcaaacagc
      661 tgattaaaat actgaaagtc aaatgttttc tatgaatatt catcagaatg ttagaacaca
      721 cttgaaaatt tggactaatt ttatggtgtg taagattttc cttccagctt agctcaatct
      781 taaaaaaaag taatacctac cacaaaacaa tttgagattc atcaaaatta atatgaattg
      841 gtctgaactc taattaaagt gaacatttta ctgtaagtaa atcatacctc agtattaaat
      901 aaattagtaa acctcaagcc ttctttattt gaggccaatc tttagaccca agccactcag
      961 gaatcctacc caatgctacc tccatgtact ggtcacagta tctgctaatg gtggaagtct
     1021 gttgttagct atgcagctgt gttccgctca agatagaccc ctccttcctc ttctgtgcta
     1081 tagtacttcc ccagttcaag gcagcctgtg tctggagtca ggttgggtat ggttaaagga
     1141 atgggaaggt cttttattgg ctgtggtttt catggattct ttcctctttc ttcaactctc
     1201 tgcggactcc aatgtgagaa ttccatgcac ctttaaatct tggactgaac aaccaacact
     1261 ctataaatca gctggcttcc atagtctgct tattgtcttc tttctttcct acttaaaatt
     1321 tttcattttt tatggggaaa aaagagtata tcttttctag cttcatacta gatttctaca
     1381 tttatctcta tcttattggg caggggagac aggagagtat ttaatggtca gaaacacaaa
     1441 ttaaataaaa gataatttaa tccaattttt caaatgagga aactgactca agtacttgga
     1501 atgcatatac tgaaccagag cagcattttt ggagaaaaat actagttgac cttgatgtta
     1561 caaatatatg tttatatttt ttaagtgcat acacacaaac acacacacac atgcatataa
     1621 aattttattt agagaacact tacagggtac ttgccatatg tcaagtactg ttttacatgc
     1681 tgtataaata gtaactcatt cactcctcat agtaaactag a
//
LOCUS       XM_032618343            5598 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X1, mRNA.
ACCESSION   XM_032618343
VERSION     XM_032618343.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5598
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5598
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 15
                     Proteins, and 87% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746724"
     CDS             1..2544
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X1"
                     /protein_id="XP_032474234.1"
                     /db_xref="GeneID:116746724"
                     /translation="MRWRRAPRRSERTGPRAPRPGPAARSPPPPPLLLLLLWTAALAP
                     GAAASDEAAPAGASVCYASPPSVGSVQELAQRAAVVIEGKVHAPRRQQGALDRKAAAG
                     EAGVWGGERQPSAAGPGALPAANRTVHPWPTGPALSAAEPGDEAPYLVKVHQVWAVKA
                     GGLKKDSLLTVRLGAWGHPAFPSCGRLKEDSRYIFFMEPDANSSGRAPAAFRASFPPL
                     ETGRNLKKEVSRVLCKRCALPPRLKEMKSQESAAGSRLVLRCETSSEYSSLKFRWFKN
                     GNELNRKNKPQNIKIQKRPGKSELRINKASLADSGEYMCKVISKLGNDSASANITIVD
                     ANEIITGMPASTETAYVSSESPIRISVSTEGANTSSSTSTSTTGTSHLVKCAEKEKTF
                     CVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVMASFYKHLGIEFMEAEELYQKR
                     VLTITGICIALLVVGIMCVVAYCKTKKQRKKLHDRLRQSLRSERNNMVNIANGPHHPN
                     PPPENVQLVNQYVSKNVISSEHIVEREAETSFSTSHYTSTAHHSTTVTQTPSHSWSNG
                     HTESIISESHSVIVMSSVENSRHSSPTGGPRGRLNGLGGPRECNSFLRHARETPDSYR
                     DSPHSERYVSAMTTPARMSPVDFHTPSSPKSPPSEMSPPVSSTTVSMPSMAVSPFVEE
                     ERPLLLVTPPWLRERDVQHVQQFSSFHCNPAHESRSPPPSPLRIVEDEEYETTQEYEL
                     TQESVKKLTNSRRAKRTKPNGHIAHRLEMDSNTSAESSNSESETEDERVGEDTPFLGI
                     QNPLAANVEAAPAFHLADSRTNPAGRFSPQEELQARLSGVIANQDPIAV"
     misc_feature    718..996
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    718..738
                     /gene="NRG1"
                     /note="putative Ig strand A [structural motif]; Region:
                     putative Ig strand A"
                     /db_xref="CDD:409476"
     misc_feature    760..786
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    805..822
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    862..879
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    892..906
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    934..951
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    970..996
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    1177..1269
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    1423..2487
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 atgagatggc gacgcgcccc gcgccgctcc gagaggaccg gaccccgggc cccgcgcccc
       61 ggccctgccg cccgctcgcc gccgccgccg ccgctgctgc tgctgctgct gtggaccgcg
      121 gccctggcgc cgggggcggc cgccagcgac gaggcggctc ccgcgggggc ctcggtgtgc
      181 tacgcgtccc cgcccagcgt gggctcggtg caggagctgg ctcagcgcgc cgcggtggtg
      241 atagagggaa aggtgcacgc gccgcggcgg cagcaggggg cactcgacag gaaggcggcg
      301 gcgggcgagg caggggtgtg gggaggcgag cgccagccgt cagccgccgg cccgggagcg
      361 ctgcccgccg ccaaccggac cgtgcacccg tggcccacgg gccccgcgct cagcgccgcc
      421 gagcccggag acgaggcgcc ctatctggtg aaggtgcacc aggtgtgggc tgtgaaagcc
      481 gggggcttga agaaggactc gctgctcacc gtgcgcctgg gcgcctgggg ccaccccgcg
      541 ttcccctcct gcgggcggct caaggaggac agcaggtata tcttcttcat ggagcccgat
      601 gccaacagca gcggccgcgc gcctgccgcc ttccgagcat ccttcccccc tctcgagacg
      661 ggccggaacc tcaagaagga agtcagccgg gtgctgtgca agcggtgcgc cttgcctccc
      721 cgattgaaag agatgaaaag tcaggagtct gcagcaggtt caagactcgt gcttcggtgc
      781 gagaccagtt ctgaatactc ctctctcaaa ttcagatggt tcaagaatgg gaatgaatta
      841 aaccgaaaga acaaaccaca aaacatcaag atacaaaaaa ggccagggaa gtcagaactt
      901 cgcattaaca aagcgtcact ggctgattct ggagaataca tgtgcaaagt gatcagcaaa
      961 ttaggaaacg acagtgcttc tgccaatatc accattgtgg atgcaaatga gatcatcact
     1021 ggcatgccag cctcaactga gacagcgtat gtgtcttcag agtctcccat tagaatatca
     1081 gtgtcaacag aaggagcaaa tacttcttca tccacatcta catctaccac tgggacaagc
     1141 catcttgtca agtgtgcaga gaaggagaaa actttctgtg tgaatggagg cgagtgcttc
     1201 atggtgaaag acctttcaaa cccctcaaga tacttgtgca agtgcccaaa tgagtttact
     1261 ggtgatcgct gccaaaacta cgtaatggcc agcttctaca agcatcttgg gattgaattt
     1321 atggaagcgg aggagctcta ccagaagaga gtactcacca tcaccggcat ctgcattgcg
     1381 ctgcttgtgg tcggcatcat gtgtgtggtg gcctactgca aaaccaagaa gcaacggaaa
     1441 aagcttcatg accggcttcg gcagagtctt cgctctgaac gaaacaacat ggtgaacata
     1501 gccaacgggc cccatcaccc caatccaccc cccgagaacg tgcagctggt gaatcaatac
     1561 gtatctaaaa atgtcatctc cagcgagcat attgtcgaga gagaggcgga gacgtctttt
     1621 tccaccagtc actacacttc gacagctcat cactccacta ctgtcaccca gactcccagt
     1681 cacagctgga gcaacggaca cactgaaagc atcatttcag aaagccactc tgtcatcgtg
     1741 atgtcatctg tagaaaacag taggcacagc agccctactg ggggcccaag aggacgtctt
     1801 aatggcttgg gaggccctcg cgagtgtaac agcttcctca ggcatgccag agaaacccct
     1861 gactcctacc gagattctcc tcatagtgaa aggtatgtat cagcaatgac caccccggct
     1921 cgtatgtcac ctgtagattt ccacacgcca agctccccca aatcgccccc ttcggaaatg
     1981 tctccacccg tgtccagcac gacggtgtcc atgccctcca tggcagtcag tcccttcgtg
     2041 gaagaagaga gacccctgct tcttgtgaca ccgccatggc tgcgggagag ggatgtccag
     2101 cacgttcagc agttcagctc cttccactgc aaccccgcgc acgagagccg cagcccaccc
     2161 cctagcccct tgaggatagt ggaggatgaa gagtatgaaa cgacccagga gtatgaactg
     2221 actcaagagt cggttaagaa actcaccaac agccggcggg ctaaaagaac caagcccaat
     2281 ggtcatattg cccacagatt ggaaatggac agcaacacaa gcgctgagag cagtaactca
     2341 gagagtgaaa cagaggatga aagagtagga gaagatacac ctttcctggg catacagaac
     2401 ccactggcag ccaatgttga ggcagcccct gccttccacc tggctgacag caggactaac
     2461 ccagcaggcc gcttctctcc gcaggaagaa ttgcaggcca ggctgtccgg tgtaatcgct
     2521 aaccaagacc ctattgctgt ataaaaccga aataaaccca tagattcacc tgtaaaactt
     2581 tattttatat aataaagtat tccaccttaa attaaacaat ttattttatt ttagcagtcc
     2641 tgcaaataga aaacaggaaa aaaaatcttt tataaattaa atatatgtat gtacaaatgt
     2701 gttatgtgcc atatgtagca attttttaca gtatttccaa acgagaaaga tatcaatggt
     2761 gcctttatgt tatgttatgt cgagagcaag ttttgtactg ttcctgtgat tgctttctca
     2821 cagtatttca gcaaaccctc tcccaccccc gcaaattccg tttttgctgg cttcttgtgc
     2881 attgcattat gacgttgact cgatgtatga tttacaggat ttgcaactgt ccctctgtct
     2941 gcttcaagta gtactcaatc agtacgtctt gtaatggcac atccatccaa atactcccct
     3001 tctgtatgaa atattctttt gctttcagta tatgaaatga gttgtgtcta cgactctgcc
     3061 agccaaaggt ctgcttcact gagctctgag ataatagtag atccagcagc gttttacggt
     3121 taattacagc aggaaactgc attaagtcat gttaaatatt aggaagaaag taatattgtg
     3181 attttttttt tttttcaaaa acggtatgat tcatcagaag acagcttgct tgacaaaagg
     3241 agctaccatt tactttattt tgattggttt tttttctcgg ccaaaaaaaa aacccaagtt
     3301 ttcgggatag caaagaaaag gggttctggc taccgatcag ggtaaaaccc aacccctaag
     3361 tcgaggactc ggtttcactt tctctctctg ggggaatgat acagcggctc atctagctga
     3421 agagcaaacc atggctgaaa aaggtgcaat cgttcctgac ttgtgttttt tcactgattt
     3481 tggagctagt gaccggttgt gtcttcttgg ctcaaggaca gatatattat ggcacaaata
     3541 ccccagcttc aacagcacac tcagcaattt gtctgaaata ccttctagag tgaaatgtgc
     3601 ctgctgtata tactggtgac gtcatcgtag ggaaatcctt cttagactgt ctagaggagt
     3661 gaatatatag aagacacggg ggagagcagc tgtgtgacct ggttagtaat ttttaagttt
     3721 tttgaccatt cctttgtcct cattatgttc ctctcatttt tcaatgttgc cttgattcag
     3781 tcataactat gcatgaacat ttttgtcagg aatggccagt gtgcacgtga tttgtgatta
     3841 gtaagaacct cctacgagtg atgactcatc aggaaatggc aatagtcttg gaaagattgc
     3901 acctttcctt gcagaaatga ctcccacctg tgtgctaacc tctctgttta cagctgtatc
     3961 acccgttttc cccctttctt acttttttgc tttactgtca caaaaacagg attaagatgg
     4021 gtctatactt tgcacgttca ctcgggattg ccaatccaag gaaagcctat aggtagaaac
     4081 atttgaaata actgctaatc caggaaaata agagaattaa aaaaaaaaaa atcacagccc
     4141 catttctgtc agattgggct ggagctttac ttaggttcca agtggcctcc taggagccat
     4201 ggaacaaaat ggggaacagg ttagcagggg gttcaaaata ccagacatga agtcaaggag
     4261 agtgactctt cttgtttgca ggtgaactga atctatttct tcaccaaatc tctatgttaa
     4321 aattaaaggg aagaagtgac atgcaaggag atcttaaaag aaaaatgcag gctgagcatg
     4381 agtcatgtca ttaagctcct aagtgtttct acaatccaca gagacacctg tctacaggtc
     4441 cttgaagtta ctcttagtat ttggtatccc aagcgtcctt catggttcca tgccactttc
     4501 tccgtgctca gcggtatctt catgtgcttg tccacctctc ctaaggaggc ccctgacaac
     4561 tctccaggtt gcactgattt cccaattctg tagaatcagt taagctcatg gcaggggaga
     4621 gaaagcagtc aagcagtgaa gagattctct aaattactct aatattgcat ttgaagacct
     4681 tgactcattc ttagtctatt tcaattttta agaagtccca ctgtaattaa aactctaaaa
     4741 tttctgtttc aaactcttca ggcatttgga gtcccattct ggagaatttc cggaataaat
     4801 aaaatcttct gttgagagca atgaacaaca ttttcctcag tatgaaaaat cactgtaaat
     4861 tttcaggttg caaaaacaga tgaaaattga gaggaaattt tctttccaac tggttctggt
     4921 cactcaccga ggtggcgtat ctgttgggac aggctctctg tccatagaat gagaggttcc
     4981 cttgatagga aaggtcagct gactcctcgg ggctacctgc tgtggccccc ggatttgggt
     5041 tcacagaggc atctccagga tgtttaaatg ccaccatccc tgtttataaa ctcaggagtg
     5101 cagtggcaat ccaaaggagt gtgaacctac gttacccgca tacgggaaac ttttgtgggt
     5161 cttcaggtag cagaaattgc ccagaagttt gacggcgacg ttgtttcctg ggtctgaaat
     5221 catatcccgc tgagaaatgt ggagtggagc atagtatatg aaaaactcct ttttctcact
     5281 ccagattcct ttactaccct actctccttc cttgcctggt aggacttttg ttcttgagag
     5341 tacctagaca gtctcgtgct ttctacaaaa tggcactctg cctgggtatt tatgaatgtg
     5401 tcccaaagag caacatgccg tatcttcctt atttaagtgc gactgtcttg atatagttag
     5461 agtttatcca gggtcatttg ctcagtaact tttttttttg gcccggggtt gaaaggtgca
     5521 tggctcacat tggtgaaaat aaggaagacc tagttttatc ttttagttct ggctgcttcc
     5581 caccagccac aaagattt
//
LOCUS       XM_032618344            5154 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X2, mRNA.
ACCESSION   XM_032618344
VERSION     XM_032618344.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5154
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5154
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 9 Proteins, and
                     86% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746724"
     CDS             1..2100
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X2"
                     /protein_id="XP_032474235.1"
                     /db_xref="GeneID:116746724"
                     /translation="MEISPPDMSEAAAERSSSPSTQLSADPSLDGLPAAEDMPETQTE
                     DGRSPGLVGLAVPCCVCLEAERLRGCLNSEKICIVPILACLVSLCLCIAGLKWVFVDK
                     IFEYDSPTHLDPGGLGQDPIISLDPTAASAVWVSSEAYTSPVSRAHSETEVQVTVPAD
                     NAVVSLEPSAVPTPKNRIFAFSFLPSTAPSFPSPTRNPEVRTPKAATQPQATETNLQT
                     APKLSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRC
                     QNYVMASFYKHLGIEFMEAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQRKKL
                     HDRLRQSLRSERNNMVNIANGPHHPNPPPENVQLVNQYVSKNVISSEHIVEREAETSF
                     STSHYTSTAHHSTTVTQTPSHSWSNGHTESIISESHSVIVMSSVENSRHSSPTGGPRG
                     RLNGLGGPRECNSFLRHARETPDSYRDSPHSERYVSAMTTPARMSPVDFHTPSSPKSP
                     PSEMSPPVSSTTVSMPSMAVSPFVEEERPLLLVTPPWLRERDVQHVQQFSSFHCNPAH
                     ESRSPPPSPLRIVEDEEYETTQEYELTQESVKKLTNSRRAKRTKPNGHIAHRLEMDSN
                     TSAESSNSESETEDERVGEDTPFLGIQNPLAANVEAAPAFHLADSRTNPAGRFSPQEE
                     LQARLSGVIANQDPIAV"
     misc_feature    733..825
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    979..2043
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 atggagattt ctcccccaga catgtccgag gcagctgctg agaggtcctc cagcccctcc
       61 actcagctga gcgcagaccc atctctggat gggcttccgg cagcagaaga catgccggag
      121 acccagacgg aagatggcag gtccccggga ctcgtgggcc tggctgttcc ctgctgtgtc
      181 tgcctggaag ctgagcgcct gagaggttgc ctcaactcag agaaaatctg catcgtcccc
      241 attctggctt gcctcgtcag cctctgcctc tgcatcgccg gcctcaagtg ggtgtttgtg
      301 gacaagattt ttgagtatga ctctcccact caccttgacc ccggagggtt aggccaggac
      361 cctattattt ctctggatcc aactgctgcc tcagctgtgt gggtatcatc tgaggcatac
      421 acttcacctg tctctagggc tcactctgaa actgaggttc aagttacagt gccagctgac
      481 aatgccgttg tgtccttgga gccttcagcg gtaccaaccc cgaagaatcg tattttcgct
      541 ttttctttcc tgccatccac tgctccatcc ttcccttcac ccactcggaa ccctgaggtg
      601 agaacaccca aggcagccac tcagccacaa gcaacagaaa ctaatctcca gactgctcct
      661 aaactttcca catctacatc taccactggg acaagccatc ttgtcaagtg tgcagagaag
      721 gagaaaactt tctgtgtgaa tggaggcgag tgcttcatgg tgaaagacct ttcaaacccc
      781 tcaagatact tgtgcaagtg cccaaatgag tttactggtg atcgctgcca aaactacgta
      841 atggccagct tctacaagca tcttgggatt gaatttatgg aagcggagga gctctaccag
      901 aagagagtac tcaccatcac cggcatctgc attgcgctgc ttgtggtcgg catcatgtgt
      961 gtggtggcct actgcaaaac caagaagcaa cggaaaaagc ttcatgaccg gcttcggcag
     1021 agtcttcgct ctgaacgaaa caacatggtg aacatagcca acgggcccca tcaccccaat
     1081 ccaccccccg agaacgtgca gctggtgaat caatacgtat ctaaaaatgt catctccagc
     1141 gagcatattg tcgagagaga ggcggagacg tctttttcca ccagtcacta cacttcgaca
     1201 gctcatcact ccactactgt cacccagact cccagtcaca gctggagcaa cggacacact
     1261 gaaagcatca tttcagaaag ccactctgtc atcgtgatgt catctgtaga aaacagtagg
     1321 cacagcagcc ctactggggg cccaagagga cgtcttaatg gcttgggagg ccctcgcgag
     1381 tgtaacagct tcctcaggca tgccagagaa acccctgact cctaccgaga ttctcctcat
     1441 agtgaaaggt atgtatcagc aatgaccacc ccggctcgta tgtcacctgt agatttccac
     1501 acgccaagct cccccaaatc gcccccttcg gaaatgtctc cacccgtgtc cagcacgacg
     1561 gtgtccatgc cctccatggc agtcagtccc ttcgtggaag aagagagacc cctgcttctt
     1621 gtgacaccgc catggctgcg ggagagggat gtccagcacg ttcagcagtt cagctccttc
     1681 cactgcaacc ccgcgcacga gagccgcagc ccacccccta gccccttgag gatagtggag
     1741 gatgaagagt atgaaacgac ccaggagtat gaactgactc aagagtcggt taagaaactc
     1801 accaacagcc ggcgggctaa aagaaccaag cccaatggtc atattgccca cagattggaa
     1861 atggacagca acacaagcgc tgagagcagt aactcagaga gtgaaacaga ggatgaaaga
     1921 gtaggagaag atacaccttt cctgggcata cagaacccac tggcagccaa tgttgaggca
     1981 gcccctgcct tccacctggc tgacagcagg actaacccag caggccgctt ctctccgcag
     2041 gaagaattgc aggccaggct gtccggtgta atcgctaacc aagaccctat tgctgtataa
     2101 aaccgaaata aacccataga ttcacctgta aaactttatt ttatataata aagtattcca
     2161 ccttaaatta aacaatttat tttattttag cagtcctgca aatagaaaac aggaaaaaaa
     2221 atcttttata aattaaatat atgtatgtac aaatgtgtta tgtgccatat gtagcaattt
     2281 tttacagtat ttccaaacga gaaagatatc aatggtgcct ttatgttatg ttatgtcgag
     2341 agcaagtttt gtactgttcc tgtgattgct ttctcacagt atttcagcaa accctctccc
     2401 acccccgcaa attccgtttt tgctggcttc ttgtgcattg cattatgacg ttgactcgat
     2461 gtatgattta caggatttgc aactgtccct ctgtctgctt caagtagtac tcaatcagta
     2521 cgtcttgtaa tggcacatcc atccaaatac tccccttctg tatgaaatat tcttttgctt
     2581 tcagtatatg aaatgagttg tgtctacgac tctgccagcc aaaggtctgc ttcactgagc
     2641 tctgagataa tagtagatcc agcagcgttt tacggttaat tacagcagga aactgcatta
     2701 agtcatgtta aatattagga agaaagtaat attgtgattt tttttttttt tcaaaaacgg
     2761 tatgattcat cagaagacag cttgcttgac aaaaggagct accatttact ttattttgat
     2821 tggttttttt tctcggccaa aaaaaaaacc caagttttcg ggatagcaaa gaaaaggggt
     2881 tctggctacc gatcagggta aaacccaacc cctaagtcga ggactcggtt tcactttctc
     2941 tctctggggg aatgatacag cggctcatct agctgaagag caaaccatgg ctgaaaaagg
     3001 tgcaatcgtt cctgacttgt gttttttcac tgattttgga gctagtgacc ggttgtgtct
     3061 tcttggctca aggacagata tattatggca caaatacccc agcttcaaca gcacactcag
     3121 caatttgtct gaaatacctt ctagagtgaa atgtgcctgc tgtatatact ggtgacgtca
     3181 tcgtagggaa atccttctta gactgtctag aggagtgaat atatagaaga cacgggggag
     3241 agcagctgtg tgacctggtt agtaattttt aagttttttg accattcctt tgtcctcatt
     3301 atgttcctct catttttcaa tgttgccttg attcagtcat aactatgcat gaacattttt
     3361 gtcaggaatg gccagtgtgc acgtgatttg tgattagtaa gaacctccta cgagtgatga
     3421 ctcatcagga aatggcaata gtcttggaaa gattgcacct ttccttgcag aaatgactcc
     3481 cacctgtgtg ctaacctctc tgtttacagc tgtatcaccc gttttccccc tttcttactt
     3541 ttttgcttta ctgtcacaaa aacaggatta agatgggtct atactttgca cgttcactcg
     3601 ggattgccaa tccaaggaaa gcctataggt agaaacattt gaaataactg ctaatccagg
     3661 aaaataagag aattaaaaaa aaaaaaatca cagccccatt tctgtcagat tgggctggag
     3721 ctttacttag gttccaagtg gcctcctagg agccatggaa caaaatgggg aacaggttag
     3781 cagggggttc aaaataccag acatgaagtc aaggagagtg actcttcttg tttgcaggtg
     3841 aactgaatct atttcttcac caaatctcta tgttaaaatt aaagggaaga agtgacatgc
     3901 aaggagatct taaaagaaaa atgcaggctg agcatgagtc atgtcattaa gctcctaagt
     3961 gtttctacaa tccacagaga cacctgtcta caggtccttg aagttactct tagtatttgg
     4021 tatcccaagc gtccttcatg gttccatgcc actttctccg tgctcagcgg tatcttcatg
     4081 tgcttgtcca cctctcctaa ggaggcccct gacaactctc caggttgcac tgatttccca
     4141 attctgtaga atcagttaag ctcatggcag gggagagaaa gcagtcaagc agtgaagaga
     4201 ttctctaaat tactctaata ttgcatttga agaccttgac tcattcttag tctatttcaa
     4261 tttttaagaa gtcccactgt aattaaaact ctaaaatttc tgtttcaaac tcttcaggca
     4321 tttggagtcc cattctggag aatttccgga ataaataaaa tcttctgttg agagcaatga
     4381 acaacatttt cctcagtatg aaaaatcact gtaaattttc aggttgcaaa aacagatgaa
     4441 aattgagagg aaattttctt tccaactggt tctggtcact caccgaggtg gcgtatctgt
     4501 tgggacaggc tctctgtcca tagaatgaga ggttcccttg ataggaaagg tcagctgact
     4561 cctcggggct acctgctgtg gcccccggat ttgggttcac agaggcatct ccaggatgtt
     4621 taaatgccac catccctgtt tataaactca ggagtgcagt ggcaatccaa aggagtgtga
     4681 acctacgtta cccgcatacg ggaaactttt gtgggtcttc aggtagcaga aattgcccag
     4741 aagtttgacg gcgacgttgt ttcctgggtc tgaaatcata tcccgctgag aaatgtggag
     4801 tggagcatag tatatgaaaa actccttttt ctcactccag attcctttac taccctactc
     4861 tccttccttg cctggtagga cttttgttct tgagagtacc tagacagtct cgtgctttct
     4921 acaaaatggc actctgcctg ggtatttatg aatgtgtccc aaagagcaac atgccgtatc
     4981 ttccttattt aagtgcgact gtcttgatat agttagagtt tatccagggt catttgctca
     5041 gtaacttttt tttttggccc ggggttgaaa ggtgcatggc tcacattggt gaaaataagg
     5101 aagacctagt tttatctttt agttctggct gcttcccacc agccacaaag attt
//
LOCUS       XM_032618345            5139 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X3, mRNA.
ACCESSION   XM_032618345
VERSION     XM_032618345.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5139
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5139
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 7
                     Proteins, and 86% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746724"
     CDS             1..2085
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X3"
                     /protein_id="XP_032474236.1"
                     /db_xref="GeneID:116746724"
                     /translation="MEISPPDMSEAAAERSSSPSTQLSADPSLDGLPAAEDMPETQTE
                     DGRSPGLVGLAVPCCVCLEAERLRGCLNSEKICIVPILACLVSLCLCIAGLKWVFVDK
                     IFEYDSPTHLDPGGLGQDPIISLDPTAASAVWVSSEAYTSPVSRAHSETEVQVTVPAD
                     NAVVSLEPSAVPTPKNRIFAFSFLPSTAPSFPSPTRNPEVRTPKAATQPQATETNLQT
                     APKLSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC
                     TESVPMKVQTQEKAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQRKKLHDRLR
                     QSLRSERNNMVNIANGPHHPNPPPENVQLVNQYVSKNVISSEHIVEREAETSFSTSHY
                     TSTAHHSTTVTQTPSHSWSNGHTESIISESHSVIVMSSVENSRHSSPTGGPRGRLNGL
                     GGPRECNSFLRHARETPDSYRDSPHSERYVSAMTTPARMSPVDFHTPSSPKSPPSEMS
                     PPVSSTTVSMPSMAVSPFVEEERPLLLVTPPWLRERDVQHVQQFSSFHCNPAHESRSP
                     PPSPLRIVEDEEYETTQEYELTQESVKKLTNSRRAKRTKPNGHIAHRLEMDSNTSAES
                     SNSESETEDERVGEDTPFLGIQNPLAANVEAAPAFHLADSRTNPAGRFSPQEELQARL
                     SGVIANQDPIAV"
     misc_feature    733..825
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    964..2028
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 atggagattt ctcccccaga catgtccgag gcagctgctg agaggtcctc cagcccctcc
       61 actcagctga gcgcagaccc atctctggat gggcttccgg cagcagaaga catgccggag
      121 acccagacgg aagatggcag gtccccggga ctcgtgggcc tggctgttcc ctgctgtgtc
      181 tgcctggaag ctgagcgcct gagaggttgc ctcaactcag agaaaatctg catcgtcccc
      241 attctggctt gcctcgtcag cctctgcctc tgcatcgccg gcctcaagtg ggtgtttgtg
      301 gacaagattt ttgagtatga ctctcccact caccttgacc ccggagggtt aggccaggac
      361 cctattattt ctctggatcc aactgctgcc tcagctgtgt gggtatcatc tgaggcatac
      421 acttcacctg tctctagggc tcactctgaa actgaggttc aagttacagt gccagctgac
      481 aatgccgttg tgtccttgga gccttcagcg gtaccaaccc cgaagaatcg tattttcgct
      541 ttttctttcc tgccatccac tgctccatcc ttcccttcac ccactcggaa ccctgaggtg
      601 agaacaccca aggcagccac tcagccacaa gcaacagaaa ctaatctcca gactgctcct
      661 aaactttcca catctacatc taccactggg acaagccatc ttgtcaagtg tgcagagaag
      721 gagaaaactt tctgtgtgaa tggaggcgag tgcttcatgg tgaaagacct ttcaaacccc
      781 tcaagatact tgtgcaagtg ccaacctgga ttcactggag cgagatgtac tgagagtgtg
      841 cccatgaaag tccaaaccca agaaaaagcg gaggagctct accagaagag agtactcacc
      901 atcaccggca tctgcattgc gctgcttgtg gtcggcatca tgtgtgtggt ggcctactgc
      961 aaaaccaaga agcaacggaa aaagcttcat gaccggcttc ggcagagtct tcgctctgaa
     1021 cgaaacaaca tggtgaacat agccaacggg ccccatcacc ccaatccacc ccccgagaac
     1081 gtgcagctgg tgaatcaata cgtatctaaa aatgtcatct ccagcgagca tattgtcgag
     1141 agagaggcgg agacgtcttt ttccaccagt cactacactt cgacagctca tcactccact
     1201 actgtcaccc agactcccag tcacagctgg agcaacggac acactgaaag catcatttca
     1261 gaaagccact ctgtcatcgt gatgtcatct gtagaaaaca gtaggcacag cagccctact
     1321 gggggcccaa gaggacgtct taatggcttg ggaggccctc gcgagtgtaa cagcttcctc
     1381 aggcatgcca gagaaacccc tgactcctac cgagattctc ctcatagtga aaggtatgta
     1441 tcagcaatga ccaccccggc tcgtatgtca cctgtagatt tccacacgcc aagctccccc
     1501 aaatcgcccc cttcggaaat gtctccaccc gtgtccagca cgacggtgtc catgccctcc
     1561 atggcagtca gtcccttcgt ggaagaagag agacccctgc ttcttgtgac accgccatgg
     1621 ctgcgggaga gggatgtcca gcacgttcag cagttcagct ccttccactg caaccccgcg
     1681 cacgagagcc gcagcccacc ccctagcccc ttgaggatag tggaggatga agagtatgaa
     1741 acgacccagg agtatgaact gactcaagag tcggttaaga aactcaccaa cagccggcgg
     1801 gctaaaagaa ccaagcccaa tggtcatatt gcccacagat tggaaatgga cagcaacaca
     1861 agcgctgaga gcagtaactc agagagtgaa acagaggatg aaagagtagg agaagataca
     1921 cctttcctgg gcatacagaa cccactggca gccaatgttg aggcagcccc tgccttccac
     1981 ctggctgaca gcaggactaa cccagcaggc cgcttctctc cgcaggaaga attgcaggcc
     2041 aggctgtccg gtgtaatcgc taaccaagac cctattgctg tataaaaccg aaataaaccc
     2101 atagattcac ctgtaaaact ttattttata taataaagta ttccacctta aattaaacaa
     2161 tttattttat tttagcagtc ctgcaaatag aaaacaggaa aaaaaatctt ttataaatta
     2221 aatatatgta tgtacaaatg tgttatgtgc catatgtagc aattttttac agtatttcca
     2281 aacgagaaag atatcaatgg tgcctttatg ttatgttatg tcgagagcaa gttttgtact
     2341 gttcctgtga ttgctttctc acagtatttc agcaaaccct ctcccacccc cgcaaattcc
     2401 gtttttgctg gcttcttgtg cattgcatta tgacgttgac tcgatgtatg atttacagga
     2461 tttgcaactg tccctctgtc tgcttcaagt agtactcaat cagtacgtct tgtaatggca
     2521 catccatcca aatactcccc ttctgtatga aatattcttt tgctttcagt atatgaaatg
     2581 agttgtgtct acgactctgc cagccaaagg tctgcttcac tgagctctga gataatagta
     2641 gatccagcag cgttttacgg ttaattacag caggaaactg cattaagtca tgttaaatat
     2701 taggaagaaa gtaatattgt gatttttttt ttttttcaaa aacggtatga ttcatcagaa
     2761 gacagcttgc ttgacaaaag gagctaccat ttactttatt ttgattggtt ttttttctcg
     2821 gccaaaaaaa aaacccaagt tttcgggata gcaaagaaaa ggggttctgg ctaccgatca
     2881 gggtaaaacc caacccctaa gtcgaggact cggtttcact ttctctctct gggggaatga
     2941 tacagcggct catctagctg aagagcaaac catggctgaa aaaggtgcaa tcgttcctga
     3001 cttgtgtttt ttcactgatt ttggagctag tgaccggttg tgtcttcttg gctcaaggac
     3061 agatatatta tggcacaaat accccagctt caacagcaca ctcagcaatt tgtctgaaat
     3121 accttctaga gtgaaatgtg cctgctgtat atactggtga cgtcatcgta gggaaatcct
     3181 tcttagactg tctagaggag tgaatatata gaagacacgg gggagagcag ctgtgtgacc
     3241 tggttagtaa tttttaagtt ttttgaccat tcctttgtcc tcattatgtt cctctcattt
     3301 ttcaatgttg ccttgattca gtcataacta tgcatgaaca tttttgtcag gaatggccag
     3361 tgtgcacgtg atttgtgatt agtaagaacc tcctacgagt gatgactcat caggaaatgg
     3421 caatagtctt ggaaagattg cacctttcct tgcagaaatg actcccacct gtgtgctaac
     3481 ctctctgttt acagctgtat cacccgtttt ccccctttct tacttttttg ctttactgtc
     3541 acaaaaacag gattaagatg ggtctatact ttgcacgttc actcgggatt gccaatccaa
     3601 ggaaagccta taggtagaaa catttgaaat aactgctaat ccaggaaaat aagagaatta
     3661 aaaaaaaaaa aatcacagcc ccatttctgt cagattgggc tggagcttta cttaggttcc
     3721 aagtggcctc ctaggagcca tggaacaaaa tggggaacag gttagcaggg ggttcaaaat
     3781 accagacatg aagtcaagga gagtgactct tcttgtttgc aggtgaactg aatctatttc
     3841 ttcaccaaat ctctatgtta aaattaaagg gaagaagtga catgcaagga gatcttaaaa
     3901 gaaaaatgca ggctgagcat gagtcatgtc attaagctcc taagtgtttc tacaatccac
     3961 agagacacct gtctacaggt ccttgaagtt actcttagta tttggtatcc caagcgtcct
     4021 tcatggttcc atgccacttt ctccgtgctc agcggtatct tcatgtgctt gtccacctct
     4081 cctaaggagg cccctgacaa ctctccaggt tgcactgatt tcccaattct gtagaatcag
     4141 ttaagctcat ggcaggggag agaaagcagt caagcagtga agagattctc taaattactc
     4201 taatattgca tttgaagacc ttgactcatt cttagtctat ttcaattttt aagaagtccc
     4261 actgtaatta aaactctaaa atttctgttt caaactcttc aggcatttgg agtcccattc
     4321 tggagaattt ccggaataaa taaaatcttc tgttgagagc aatgaacaac attttcctca
     4381 gtatgaaaaa tcactgtaaa ttttcaggtt gcaaaaacag atgaaaattg agaggaaatt
     4441 ttctttccaa ctggttctgg tcactcaccg aggtggcgta tctgttggga caggctctct
     4501 gtccatagaa tgagaggttc ccttgatagg aaaggtcagc tgactcctcg gggctacctg
     4561 ctgtggcccc cggatttggg ttcacagagg catctccagg atgtttaaat gccaccatcc
     4621 ctgtttataa actcaggagt gcagtggcaa tccaaaggag tgtgaaccta cgttacccgc
     4681 atacgggaaa cttttgtggg tcttcaggta gcagaaattg cccagaagtt tgacggcgac
     4741 gttgtttcct gggtctgaaa tcatatcccg ctgagaaatg tggagtggag catagtatat
     4801 gaaaaactcc tttttctcac tccagattcc tttactaccc tactctcctt ccttgcctgg
     4861 taggactttt gttcttgaga gtacctagac agtctcgtgc tttctacaaa atggcactct
     4921 gcctgggtat ttatgaatgt gtcccaaaga gcaacatgcc gtatcttcct tatttaagtg
     4981 cgactgtctt gatatagtta gagtttatcc agggtcattt gctcagtaac tttttttttt
     5041 ggcccggggt tgaaaggtgc atggctcaca ttggtgaaaa taaggaagac ctagttttat
     5101 cttttagttc tggctgcttc ccaccagcca caaagattt
//
LOCUS       XM_032618346            5471 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X4, mRNA.
ACCESSION   XM_032618346
VERSION     XM_032618346.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5471
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5471
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746724"
     CDS             486..2417
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X4"
                     /protein_id="XP_032474237.1"
                     /db_xref="GeneID:116746724"
                     /translation="MSERKEGRGKGKGKKDRGSGKKPAPAAGGPSPALPPRLKEMKSQ
                     ESAAGSRLVLRCETSSEYSSLKFRWFKNGNELNRKNKPQNIKIQKRPGKSELRINKAS
                     LADSGEYMCKVISKLGNDSASANITIVDANEIITGMPASTETAYVSSESPIRISVSTE
                     GANTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD
                     RCQNYVMASFYKHLGIEFMEAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQRK
                     KLHDRLRQSLRSERNNMVNIANGPHHPNPPPENVQLVNQYVSKNVISSEHIVEREAET
                     SFSTSHYTSTAHHSTTVTQTPSHSWSNGHTESIISESHSVIVMSSVENSRHSSPTGGP
                     RGRLNGLGGPRECNSFLRHARETPDSYRDSPHSERYVSAMTTPARMSPVDFHTPSSPK
                     SPPSEMSPPVSSTTVSMPSMAVSPFVEEERPLLLVTPPWLRERDVQHVQQFSSFHCNP
                     AHESRSPPPSPLRIVEDEEYETTQEYELTQESVKKLTNSRRAKRTKPNGHIAHRLEMD
                     SNTSAESSNSESETEDERVGEDTPFLGIQNPLAANVEAAPAFHLADSRTNPAGRFSPQ
                     EELQARLSGVIANQDPIAV"
     misc_feature    591..869
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    591..611
                     /gene="NRG1"
                     /note="putative Ig strand A [structural motif]; Region:
                     putative Ig strand A"
                     /db_xref="CDD:409476"
     misc_feature    633..659
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    678..695
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    735..752
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    765..779
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    807..824
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    843..869
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    1050..1142
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    1296..2360
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 attgaaaaag agccggcgag gagttccccc caacttgtcg aaactccggg ctcgcgcgga
       61 gggcaggagc ggggtgactg cggctgccgg gcgacgcaag cgctggccgg acggttatcg
      121 cctctccctc ctcgggctgc gagcgcgccg gacagaggcc gcgacaggag ccgacagcgg
      181 cgggaaccga gcacttccct gcgcgacagg agccgccccg agagcgagcg cgaccgccgg
      241 acgcagcgac cgccagtccc aggtggcccg gaccgcacgc cgcgtccccg cgctccccgc
      301 cggcgacagg agacgccccc cgcgcagcgc gcgagccgca gcccggccgg tggttctacc
      361 cgcctccgcc ccccgccctc gagggacaaa cttttcccaa agccgatccc agcccttgga
      421 ccaaacttgt cgcgcgtcgc ctccgccggg cgccgtccgc gcagagcgtg cacttctcgg
      481 gcgagatgtc ggagcgcaaa gaaggcagag gcaaggggaa gggcaagaag gaccgaggct
      541 ccgggaagaa gcccgcgccc gcggcgggcg gcccgagccc agccttgcct ccccgattga
      601 aagagatgaa aagtcaggag tctgcagcag gttcaagact cgtgcttcgg tgcgagacca
      661 gttctgaata ctcctctctc aaattcagat ggttcaagaa tgggaatgaa ttaaaccgaa
      721 agaacaaacc acaaaacatc aagatacaaa aaaggccagg gaagtcagaa cttcgcatta
      781 acaaagcgtc actggctgat tctggagaat acatgtgcaa agtgatcagc aaattaggaa
      841 acgacagtgc ttctgccaat atcaccattg tggatgcaaa tgagatcatc actggcatgc
      901 cagcctcaac tgagacagcg tatgtgtctt cagagtctcc cattagaata tcagtgtcaa
      961 cagaaggagc aaatacttct tcatccacat ctacatctac cactgggaca agccatcttg
     1021 tcaagtgtgc agagaaggag aaaactttct gtgtgaatgg aggcgagtgc ttcatggtga
     1081 aagacctttc aaacccctca agatacttgt gcaagtgccc aaatgagttt actggtgatc
     1141 gctgccaaaa ctacgtaatg gccagcttct acaagcatct tgggattgaa tttatggaag
     1201 cggaggagct ctaccagaag agagtactca ccatcaccgg catctgcatt gcgctgcttg
     1261 tggtcggcat catgtgtgtg gtggcctact gcaaaaccaa gaagcaacgg aaaaagcttc
     1321 atgaccggct tcggcagagt cttcgctctg aacgaaacaa catggtgaac atagccaacg
     1381 ggccccatca ccccaatcca ccccccgaga acgtgcagct ggtgaatcaa tacgtatcta
     1441 aaaatgtcat ctccagcgag catattgtcg agagagaggc ggagacgtct ttttccacca
     1501 gtcactacac ttcgacagct catcactcca ctactgtcac ccagactccc agtcacagct
     1561 ggagcaacgg acacactgaa agcatcattt cagaaagcca ctctgtcatc gtgatgtcat
     1621 ctgtagaaaa cagtaggcac agcagcccta ctgggggccc aagaggacgt cttaatggct
     1681 tgggaggccc tcgcgagtgt aacagcttcc tcaggcatgc cagagaaacc cctgactcct
     1741 accgagattc tcctcatagt gaaaggtatg tatcagcaat gaccaccccg gctcgtatgt
     1801 cacctgtaga tttccacacg ccaagctccc ccaaatcgcc cccttcggaa atgtctccac
     1861 ccgtgtccag cacgacggtg tccatgccct ccatggcagt cagtcccttc gtggaagaag
     1921 agagacccct gcttcttgtg acaccgccat ggctgcggga gagggatgtc cagcacgttc
     1981 agcagttcag ctccttccac tgcaaccccg cgcacgagag ccgcagccca ccccctagcc
     2041 ccttgaggat agtggaggat gaagagtatg aaacgaccca ggagtatgaa ctgactcaag
     2101 agtcggttaa gaaactcacc aacagccggc gggctaaaag aaccaagccc aatggtcata
     2161 ttgcccacag attggaaatg gacagcaaca caagcgctga gagcagtaac tcagagagtg
     2221 aaacagagga tgaaagagta ggagaagata cacctttcct gggcatacag aacccactgg
     2281 cagccaatgt tgaggcagcc cctgccttcc acctggctga cagcaggact aacccagcag
     2341 gccgcttctc tccgcaggaa gaattgcagg ccaggctgtc cggtgtaatc gctaaccaag
     2401 accctattgc tgtataaaac cgaaataaac ccatagattc acctgtaaaa ctttatttta
     2461 tataataaag tattccacct taaattaaac aatttatttt attttagcag tcctgcaaat
     2521 agaaaacagg aaaaaaaatc ttttataaat taaatatatg tatgtacaaa tgtgttatgt
     2581 gccatatgta gcaatttttt acagtatttc caaacgagaa agatatcaat ggtgccttta
     2641 tgttatgtta tgtcgagagc aagttttgta ctgttcctgt gattgctttc tcacagtatt
     2701 tcagcaaacc ctctcccacc cccgcaaatt ccgtttttgc tggcttcttg tgcattgcat
     2761 tatgacgttg actcgatgta tgatttacag gatttgcaac tgtccctctg tctgcttcaa
     2821 gtagtactca atcagtacgt cttgtaatgg cacatccatc caaatactcc ccttctgtat
     2881 gaaatattct tttgctttca gtatatgaaa tgagttgtgt ctacgactct gccagccaaa
     2941 ggtctgcttc actgagctct gagataatag tagatccagc agcgttttac ggttaattac
     3001 agcaggaaac tgcattaagt catgttaaat attaggaaga aagtaatatt gtgatttttt
     3061 ttttttttca aaaacggtat gattcatcag aagacagctt gcttgacaaa aggagctacc
     3121 atttacttta ttttgattgg ttttttttct cggccaaaaa aaaaacccaa gttttcggga
     3181 tagcaaagaa aaggggttct ggctaccgat cagggtaaaa cccaacccct aagtcgagga
     3241 ctcggtttca ctttctctct ctgggggaat gatacagcgg ctcatctagc tgaagagcaa
     3301 accatggctg aaaaaggtgc aatcgttcct gacttgtgtt ttttcactga ttttggagct
     3361 agtgaccggt tgtgtcttct tggctcaagg acagatatat tatggcacaa ataccccagc
     3421 ttcaacagca cactcagcaa tttgtctgaa ataccttcta gagtgaaatg tgcctgctgt
     3481 atatactggt gacgtcatcg tagggaaatc cttcttagac tgtctagagg agtgaatata
     3541 tagaagacac gggggagagc agctgtgtga cctggttagt aatttttaag ttttttgacc
     3601 attcctttgt cctcattatg ttcctctcat ttttcaatgt tgccttgatt cagtcataac
     3661 tatgcatgaa catttttgtc aggaatggcc agtgtgcacg tgatttgtga ttagtaagaa
     3721 cctcctacga gtgatgactc atcaggaaat ggcaatagtc ttggaaagat tgcacctttc
     3781 cttgcagaaa tgactcccac ctgtgtgcta acctctctgt ttacagctgt atcacccgtt
     3841 ttcccccttt cttacttttt tgctttactg tcacaaaaac aggattaaga tgggtctata
     3901 ctttgcacgt tcactcggga ttgccaatcc aaggaaagcc tataggtaga aacatttgaa
     3961 ataactgcta atccaggaaa ataagagaat taaaaaaaaa aaaatcacag ccccatttct
     4021 gtcagattgg gctggagctt tacttaggtt ccaagtggcc tcctaggagc catggaacaa
     4081 aatggggaac aggttagcag ggggttcaaa ataccagaca tgaagtcaag gagagtgact
     4141 cttcttgttt gcaggtgaac tgaatctatt tcttcaccaa atctctatgt taaaattaaa
     4201 gggaagaagt gacatgcaag gagatcttaa aagaaaaatg caggctgagc atgagtcatg
     4261 tcattaagct cctaagtgtt tctacaatcc acagagacac ctgtctacag gtccttgaag
     4321 ttactcttag tatttggtat cccaagcgtc cttcatggtt ccatgccact ttctccgtgc
     4381 tcagcggtat cttcatgtgc ttgtccacct ctcctaagga ggcccctgac aactctccag
     4441 gttgcactga tttcccaatt ctgtagaatc agttaagctc atggcagggg agagaaagca
     4501 gtcaagcagt gaagagattc tctaaattac tctaatattg catttgaaga ccttgactca
     4561 ttcttagtct atttcaattt ttaagaagtc ccactgtaat taaaactcta aaatttctgt
     4621 ttcaaactct tcaggcattt ggagtcccat tctggagaat ttccggaata aataaaatct
     4681 tctgttgaga gcaatgaaca acattttcct cagtatgaaa aatcactgta aattttcagg
     4741 ttgcaaaaac agatgaaaat tgagaggaaa ttttctttcc aactggttct ggtcactcac
     4801 cgaggtggcg tatctgttgg gacaggctct ctgtccatag aatgagaggt tcccttgata
     4861 ggaaaggtca gctgactcct cggggctacc tgctgtggcc cccggatttg ggttcacaga
     4921 ggcatctcca ggatgtttaa atgccaccat ccctgtttat aaactcagga gtgcagtggc
     4981 aatccaaagg agtgtgaacc tacgttaccc gcatacggga aacttttgtg ggtcttcagg
     5041 tagcagaaat tgcccagaag tttgacggcg acgttgtttc ctgggtctga aatcatatcc
     5101 cgctgagaaa tgtggagtgg agcatagtat atgaaaaact cctttttctc actccagatt
     5161 cctttactac cctactctcc ttccttgcct ggtaggactt ttgttcttga gagtacctag
     5221 acagtctcgt gctttctaca aaatggcact ctgcctgggt atttatgaat gtgtcccaaa
     5281 gagcaacatg ccgtatcttc cttatttaag tgcgactgtc ttgatatagt tagagtttat
     5341 ccagggtcat ttgctcagta actttttttt ttggcccggg gttgaaaggt gcatggctca
     5401 cattggtgaa aataaggaag acctagtttt atcttttagt tctggctgct tcccaccagc
     5461 cacaaagatt t
//
LOCUS       XM_032618347            5490 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X5, mRNA.
ACCESSION   XM_032618347
VERSION     XM_032618347.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5490
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5490
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746724"
     CDS             520..2436
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X5"
                     /protein_id="XP_032474238.1"
                     /db_xref="GeneID:116746724"
                     /translation="MSERKEGRGKGKGKKDRGSGKKPAPAAGGPSPALPPRLKEMKSQ
                     ESAAGSRLVLRCETSSEYSSLKFRWFKNGNELNRKNKPQNIKIQKRPGKSELRINKAS
                     LADSGEYMCKVISKLGNDSASANITIVDANEIITGMPASTETAYVSSESPIRISVSTE
                     GANTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA
                     RCTESVPMKVQTQEKAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQRKKLHDR
                     LRQSLRSERNNMVNIANGPHHPNPPPENVQLVNQYVSKNVISSEHIVEREAETSFSTS
                     HYTSTAHHSTTVTQTPSHSWSNGHTESIISESHSVIVMSSVENSRHSSPTGGPRGRLN
                     GLGGPRECNSFLRHARETPDSYRDSPHSERYVSAMTTPARMSPVDFHTPSSPKSPPSE
                     MSPPVSSTTVSMPSMAVSPFVEEERPLLLVTPPWLRERDVQHVQQFSSFHCNPAHESR
                     SPPPSPLRIVEDEEYETTQEYELTQESVKKLTNSRRAKRTKPNGHIAHRLEMDSNTSA
                     ESSNSESETEDERVGEDTPFLGIQNPLAANVEAAPAFHLADSRTNPAGRFSPQEELQA
                     RLSGVIANQDPIAV"
     misc_feature    625..903
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    625..645
                     /gene="NRG1"
                     /note="putative Ig strand A [structural motif]; Region:
                     putative Ig strand A"
                     /db_xref="CDD:409476"
     misc_feature    667..693
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    712..729
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    769..786
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    799..813
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    841..858
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    877..903
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    <1060..1338
                     /gene="NRG1"
                     /note="epidermal growth factor-like protein (EGF-like
                     protein); Provisional; Region: PHA03099"
                     /db_xref="CDD:165381"
     misc_feature    1084..1176
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    1315..2379
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 aacctgcggg cgggaggtgg ttggcggtgg ggcaattgaa aaagagccgg cgaggagttc
       61 cccccaactt gtcgaaactc cgggctcgcg cggagggcag gagcggggtg actgcggctg
      121 ccgggcgacg caagcgctgg ccggacggtt atcgcctctc cctcctcggg ctgcgagcgc
      181 gccggacaga ggccgcgaca ggagccgaca gcggcgggaa ccgagcactt ccctgcgcga
      241 caggagccgc cccgagagcg agcgcgaccg ccggacgcag cgaccgccag tcccaggtgg
      301 cccggaccgc acgccgcgtc cccgcgctcc ccgccggcga caggagacgc cccccgcgca
      361 gcgcgcgagc cgcagcccgg ccggtggttc tacccgcctc cgccccccgc cctcgaggga
      421 caaacttttc ccaaagccga tcccagccct tggaccaaac ttgtcgcgcg tcgcctccgc
      481 cgggcgccgt ccgcgcagag cgtgcacttc tcgggcgaga tgtcggagcg caaagaaggc
      541 agaggcaagg ggaagggcaa gaaggaccga ggctccggga agaagcccgc gcccgcggcg
      601 ggcggcccga gcccagcctt gcctccccga ttgaaagaga tgaaaagtca ggagtctgca
      661 gcaggttcaa gactcgtgct tcggtgcgag accagttctg aatactcctc tctcaaattc
      721 agatggttca agaatgggaa tgaattaaac cgaaagaaca aaccacaaaa catcaagata
      781 caaaaaaggc cagggaagtc agaacttcgc attaacaaag cgtcactggc tgattctgga
      841 gaatacatgt gcaaagtgat cagcaaatta ggaaacgaca gtgcttctgc caatatcacc
      901 attgtggatg caaatgagat catcactggc atgccagcct caactgagac agcgtatgtg
      961 tcttcagagt ctcccattag aatatcagtg tcaacagaag gagcaaatac ttcttcatcc
     1021 acatctacat ctaccactgg gacaagccat cttgtcaagt gtgcagagaa ggagaaaact
     1081 ttctgtgtga atggaggcga gtgcttcatg gtgaaagacc tttcaaaccc ctcaagatac
     1141 ttgtgcaagt gccaacctgg attcactgga gcgagatgta ctgagagtgt gcccatgaaa
     1201 gtccaaaccc aagaaaaagc ggaggagctc taccagaaga gagtactcac catcaccggc
     1261 atctgcattg cgctgcttgt ggtcggcatc atgtgtgtgg tggcctactg caaaaccaag
     1321 aagcaacgga aaaagcttca tgaccggctt cggcagagtc ttcgctctga acgaaacaac
     1381 atggtgaaca tagccaacgg gccccatcac cccaatccac cccccgagaa cgtgcagctg
     1441 gtgaatcaat acgtatctaa aaatgtcatc tccagcgagc atattgtcga gagagaggcg
     1501 gagacgtctt tttccaccag tcactacact tcgacagctc atcactccac tactgtcacc
     1561 cagactccca gtcacagctg gagcaacgga cacactgaaa gcatcatttc agaaagccac
     1621 tctgtcatcg tgatgtcatc tgtagaaaac agtaggcaca gcagccctac tgggggccca
     1681 agaggacgtc ttaatggctt gggaggccct cgcgagtgta acagcttcct caggcatgcc
     1741 agagaaaccc ctgactccta ccgagattct cctcatagtg aaaggtatgt atcagcaatg
     1801 accaccccgg ctcgtatgtc acctgtagat ttccacacgc caagctcccc caaatcgccc
     1861 ccttcggaaa tgtctccacc cgtgtccagc acgacggtgt ccatgccctc catggcagtc
     1921 agtcccttcg tggaagaaga gagacccctg cttcttgtga caccgccatg gctgcgggag
     1981 agggatgtcc agcacgttca gcagttcagc tccttccact gcaaccccgc gcacgagagc
     2041 cgcagcccac cccctagccc cttgaggata gtggaggatg aagagtatga aacgacccag
     2101 gagtatgaac tgactcaaga gtcggttaag aaactcacca acagccggcg ggctaaaaga
     2161 accaagccca atggtcatat tgcccacaga ttggaaatgg acagcaacac aagcgctgag
     2221 agcagtaact cagagagtga aacagaggat gaaagagtag gagaagatac acctttcctg
     2281 ggcatacaga acccactggc agccaatgtt gaggcagccc ctgccttcca cctggctgac
     2341 agcaggacta acccagcagg ccgcttctct ccgcaggaag aattgcaggc caggctgtcc
     2401 ggtgtaatcg ctaaccaaga ccctattgct gtataaaacc gaaataaacc catagattca
     2461 cctgtaaaac tttattttat ataataaagt attccacctt aaattaaaca atttatttta
     2521 ttttagcagt cctgcaaata gaaaacagga aaaaaaatct tttataaatt aaatatatgt
     2581 atgtacaaat gtgttatgtg ccatatgtag caatttttta cagtatttcc aaacgagaaa
     2641 gatatcaatg gtgcctttat gttatgttat gtcgagagca agttttgtac tgttcctgtg
     2701 attgctttct cacagtattt cagcaaaccc tctcccaccc ccgcaaattc cgtttttgct
     2761 ggcttcttgt gcattgcatt atgacgttga ctcgatgtat gatttacagg atttgcaact
     2821 gtccctctgt ctgcttcaag tagtactcaa tcagtacgtc ttgtaatggc acatccatcc
     2881 aaatactccc cttctgtatg aaatattctt ttgctttcag tatatgaaat gagttgtgtc
     2941 tacgactctg ccagccaaag gtctgcttca ctgagctctg agataatagt agatccagca
     3001 gcgttttacg gttaattaca gcaggaaact gcattaagtc atgttaaata ttaggaagaa
     3061 agtaatattg tgattttttt tttttttcaa aaacggtatg attcatcaga agacagcttg
     3121 cttgacaaaa ggagctacca tttactttat tttgattggt tttttttctc ggccaaaaaa
     3181 aaaacccaag ttttcgggat agcaaagaaa aggggttctg gctaccgatc agggtaaaac
     3241 ccaaccccta agtcgaggac tcggtttcac tttctctctc tgggggaatg atacagcggc
     3301 tcatctagct gaagagcaaa ccatggctga aaaaggtgca atcgttcctg acttgtgttt
     3361 tttcactgat tttggagcta gtgaccggtt gtgtcttctt ggctcaagga cagatatatt
     3421 atggcacaaa taccccagct tcaacagcac actcagcaat ttgtctgaaa taccttctag
     3481 agtgaaatgt gcctgctgta tatactggtg acgtcatcgt agggaaatcc ttcttagact
     3541 gtctagagga gtgaatatat agaagacacg ggggagagca gctgtgtgac ctggttagta
     3601 atttttaagt tttttgacca ttcctttgtc ctcattatgt tcctctcatt tttcaatgtt
     3661 gccttgattc agtcataact atgcatgaac atttttgtca ggaatggcca gtgtgcacgt
     3721 gatttgtgat tagtaagaac ctcctacgag tgatgactca tcaggaaatg gcaatagtct
     3781 tggaaagatt gcacctttcc ttgcagaaat gactcccacc tgtgtgctaa cctctctgtt
     3841 tacagctgta tcacccgttt tccccctttc ttactttttt gctttactgt cacaaaaaca
     3901 ggattaagat gggtctatac tttgcacgtt cactcgggat tgccaatcca aggaaagcct
     3961 ataggtagaa acatttgaaa taactgctaa tccaggaaaa taagagaatt aaaaaaaaaa
     4021 aaatcacagc cccatttctg tcagattggg ctggagcttt acttaggttc caagtggcct
     4081 cctaggagcc atggaacaaa atggggaaca ggttagcagg gggttcaaaa taccagacat
     4141 gaagtcaagg agagtgactc ttcttgtttg caggtgaact gaatctattt cttcaccaaa
     4201 tctctatgtt aaaattaaag ggaagaagtg acatgcaagg agatcttaaa agaaaaatgc
     4261 aggctgagca tgagtcatgt cattaagctc ctaagtgttt ctacaatcca cagagacacc
     4321 tgtctacagg tccttgaagt tactcttagt atttggtatc ccaagcgtcc ttcatggttc
     4381 catgccactt tctccgtgct cagcggtatc ttcatgtgct tgtccacctc tcctaaggag
     4441 gcccctgaca actctccagg ttgcactgat ttcccaattc tgtagaatca gttaagctca
     4501 tggcagggga gagaaagcag tcaagcagtg aagagattct ctaaattact ctaatattgc
     4561 atttgaagac cttgactcat tcttagtcta tttcaatttt taagaagtcc cactgtaatt
     4621 aaaactctaa aatttctgtt tcaaactctt caggcatttg gagtcccatt ctggagaatt
     4681 tccggaataa ataaaatctt ctgttgagag caatgaacaa cattttcctc agtatgaaaa
     4741 atcactgtaa attttcaggt tgcaaaaaca gatgaaaatt gagaggaaat tttctttcca
     4801 actggttctg gtcactcacc gaggtggcgt atctgttggg acaggctctc tgtccataga
     4861 atgagaggtt cccttgatag gaaaggtcag ctgactcctc ggggctacct gctgtggccc
     4921 ccggatttgg gttcacagag gcatctccag gatgtttaaa tgccaccatc cctgtttata
     4981 aactcaggag tgcagtggca atccaaagga gtgtgaacct acgttacccg catacgggaa
     5041 acttttgtgg gtcttcaggt agcagaaatt gcccagaagt ttgacggcga cgttgtttcc
     5101 tgggtctgaa atcatatccc gctgagaaat gtggagtgga gcatagtata tgaaaaactc
     5161 ctttttctca ctccagattc ctttactacc ctactctcct tccttgcctg gtaggacttt
     5221 tgttcttgag agtacctaga cagtctcgtg ctttctacaa aatggcactc tgcctgggta
     5281 tttatgaatg tgtcccaaag agcaacatgc cgtatcttcc ttatttaagt gcgactgtct
     5341 tgatatagtt agagtttatc cagggtcatt tgctcagtaa cttttttttt tggcccgggg
     5401 ttgaaaggtg catggctcac attggtgaaa ataaggaaga cctagtttta tcttttagtt
     5461 ctggctgctt cccaccagcc acaaagattt
//
LOCUS       XM_032618348            5447 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X6, mRNA.
ACCESSION   XM_032618348
VERSION     XM_032618348.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5447
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5447
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 15
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746724"
     CDS             486..2393
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X6"
                     /protein_id="XP_032474239.1"
                     /db_xref="GeneID:116746724"
                     /translation="MSERKEGRGKGKGKKDRGSGKKPAPAAGGPSPALPPRLKEMKSQ
                     ESAAGSRLVLRCETSSEYSSLKFRWFKNGNELNRKNKPQNIKIQKRPGKSELRINKAS
                     LADSGEYMCKVISKLGNDSASANITIVDANEIITGMPASTETAYVSSESPIRISVSTE
                     GANTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD
                     RCQNYVMASFYKAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQRKKLHDRLRQ
                     SLRSERNNMVNIANGPHHPNPPPENVQLVNQYVSKNVISSEHIVEREAETSFSTSHYT
                     STAHHSTTVTQTPSHSWSNGHTESIISESHSVIVMSSVENSRHSSPTGGPRGRLNGLG
                     GPRECNSFLRHARETPDSYRDSPHSERYVSAMTTPARMSPVDFHTPSSPKSPPSEMSP
                     PVSSTTVSMPSMAVSPFVEEERPLLLVTPPWLRERDVQHVQQFSSFHCNPAHESRSPP
                     PSPLRIVEDEEYETTQEYELTQESVKKLTNSRRAKRTKPNGHIAHRLEMDSNTSAESS
                     NSESETEDERVGEDTPFLGIQNPLAANVEAAPAFHLADSRTNPAGRFSPQEELQARLS
                     GVIANQDPIAV"
     misc_feature    591..869
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    591..611
                     /gene="NRG1"
                     /note="putative Ig strand A [structural motif]; Region:
                     putative Ig strand A"
                     /db_xref="CDD:409476"
     misc_feature    633..659
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    678..695
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    735..752
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    765..779
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    807..824
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    843..869
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    <1026..1295
                     /gene="NRG1"
                     /note="epidermal growth factor-like protein (EGF-like
                     protein); Provisional; Region: PHA03099"
                     /db_xref="CDD:165381"
     misc_feature    1050..1142
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    1272..2336
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 attgaaaaag agccggcgag gagttccccc caacttgtcg aaactccggg ctcgcgcgga
       61 gggcaggagc ggggtgactg cggctgccgg gcgacgcaag cgctggccgg acggttatcg
      121 cctctccctc ctcgggctgc gagcgcgccg gacagaggcc gcgacaggag ccgacagcgg
      181 cgggaaccga gcacttccct gcgcgacagg agccgccccg agagcgagcg cgaccgccgg
      241 acgcagcgac cgccagtccc aggtggcccg gaccgcacgc cgcgtccccg cgctccccgc
      301 cggcgacagg agacgccccc cgcgcagcgc gcgagccgca gcccggccgg tggttctacc
      361 cgcctccgcc ccccgccctc gagggacaaa cttttcccaa agccgatccc agcccttgga
      421 ccaaacttgt cgcgcgtcgc ctccgccggg cgccgtccgc gcagagcgtg cacttctcgg
      481 gcgagatgtc ggagcgcaaa gaaggcagag gcaaggggaa gggcaagaag gaccgaggct
      541 ccgggaagaa gcccgcgccc gcggcgggcg gcccgagccc agccttgcct ccccgattga
      601 aagagatgaa aagtcaggag tctgcagcag gttcaagact cgtgcttcgg tgcgagacca
      661 gttctgaata ctcctctctc aaattcagat ggttcaagaa tgggaatgaa ttaaaccgaa
      721 agaacaaacc acaaaacatc aagatacaaa aaaggccagg gaagtcagaa cttcgcatta
      781 acaaagcgtc actggctgat tctggagaat acatgtgcaa agtgatcagc aaattaggaa
      841 acgacagtgc ttctgccaat atcaccattg tggatgcaaa tgagatcatc actggcatgc
      901 cagcctcaac tgagacagcg tatgtgtctt cagagtctcc cattagaata tcagtgtcaa
      961 cagaaggagc aaatacttct tcatccacat ctacatctac cactgggaca agccatcttg
     1021 tcaagtgtgc agagaaggag aaaactttct gtgtgaatgg aggcgagtgc ttcatggtga
     1081 aagacctttc aaacccctca agatacttgt gcaagtgccc aaatgagttt actggtgatc
     1141 gctgccaaaa ctacgtaatg gccagcttct acaaagcgga ggagctctac cagaagagag
     1201 tactcaccat caccggcatc tgcattgcgc tgcttgtggt cggcatcatg tgtgtggtgg
     1261 cctactgcaa aaccaagaag caacggaaaa agcttcatga ccggcttcgg cagagtcttc
     1321 gctctgaacg aaacaacatg gtgaacatag ccaacgggcc ccatcacccc aatccacccc
     1381 ccgagaacgt gcagctggtg aatcaatacg tatctaaaaa tgtcatctcc agcgagcata
     1441 ttgtcgagag agaggcggag acgtcttttt ccaccagtca ctacacttcg acagctcatc
     1501 actccactac tgtcacccag actcccagtc acagctggag caacggacac actgaaagca
     1561 tcatttcaga aagccactct gtcatcgtga tgtcatctgt agaaaacagt aggcacagca
     1621 gccctactgg gggcccaaga ggacgtctta atggcttggg aggccctcgc gagtgtaaca
     1681 gcttcctcag gcatgccaga gaaacccctg actcctaccg agattctcct catagtgaaa
     1741 ggtatgtatc agcaatgacc accccggctc gtatgtcacc tgtagatttc cacacgccaa
     1801 gctcccccaa atcgccccct tcggaaatgt ctccacccgt gtccagcacg acggtgtcca
     1861 tgccctccat ggcagtcagt cccttcgtgg aagaagagag acccctgctt cttgtgacac
     1921 cgccatggct gcgggagagg gatgtccagc acgttcagca gttcagctcc ttccactgca
     1981 accccgcgca cgagagccgc agcccacccc ctagcccctt gaggatagtg gaggatgaag
     2041 agtatgaaac gacccaggag tatgaactga ctcaagagtc ggttaagaaa ctcaccaaca
     2101 gccggcgggc taaaagaacc aagcccaatg gtcatattgc ccacagattg gaaatggaca
     2161 gcaacacaag cgctgagagc agtaactcag agagtgaaac agaggatgaa agagtaggag
     2221 aagatacacc tttcctgggc atacagaacc cactggcagc caatgttgag gcagcccctg
     2281 ccttccacct ggctgacagc aggactaacc cagcaggccg cttctctccg caggaagaat
     2341 tgcaggccag gctgtccggt gtaatcgcta accaagaccc tattgctgta taaaaccgaa
     2401 ataaacccat agattcacct gtaaaacttt attttatata ataaagtatt ccaccttaaa
     2461 ttaaacaatt tattttattt tagcagtcct gcaaatagaa aacaggaaaa aaaatctttt
     2521 ataaattaaa tatatgtatg tacaaatgtg ttatgtgcca tatgtagcaa ttttttacag
     2581 tatttccaaa cgagaaagat atcaatggtg cctttatgtt atgttatgtc gagagcaagt
     2641 tttgtactgt tcctgtgatt gctttctcac agtatttcag caaaccctct cccacccccg
     2701 caaattccgt ttttgctggc ttcttgtgca ttgcattatg acgttgactc gatgtatgat
     2761 ttacaggatt tgcaactgtc cctctgtctg cttcaagtag tactcaatca gtacgtcttg
     2821 taatggcaca tccatccaaa tactcccctt ctgtatgaaa tattcttttg ctttcagtat
     2881 atgaaatgag ttgtgtctac gactctgcca gccaaaggtc tgcttcactg agctctgaga
     2941 taatagtaga tccagcagcg ttttacggtt aattacagca ggaaactgca ttaagtcatg
     3001 ttaaatatta ggaagaaagt aatattgtga tttttttttt ttttcaaaaa cggtatgatt
     3061 catcagaaga cagcttgctt gacaaaagga gctaccattt actttatttt gattggtttt
     3121 ttttctcggc caaaaaaaaa acccaagttt tcgggatagc aaagaaaagg ggttctggct
     3181 accgatcagg gtaaaaccca acccctaagt cgaggactcg gtttcacttt ctctctctgg
     3241 gggaatgata cagcggctca tctagctgaa gagcaaacca tggctgaaaa aggtgcaatc
     3301 gttcctgact tgtgtttttt cactgatttt ggagctagtg accggttgtg tcttcttggc
     3361 tcaaggacag atatattatg gcacaaatac cccagcttca acagcacact cagcaatttg
     3421 tctgaaatac cttctagagt gaaatgtgcc tgctgtatat actggtgacg tcatcgtagg
     3481 gaaatccttc ttagactgtc tagaggagtg aatatataga agacacgggg gagagcagct
     3541 gtgtgacctg gttagtaatt tttaagtttt ttgaccattc ctttgtcctc attatgttcc
     3601 tctcattttt caatgttgcc ttgattcagt cataactatg catgaacatt tttgtcagga
     3661 atggccagtg tgcacgtgat ttgtgattag taagaacctc ctacgagtga tgactcatca
     3721 ggaaatggca atagtcttgg aaagattgca cctttccttg cagaaatgac tcccacctgt
     3781 gtgctaacct ctctgtttac agctgtatca cccgttttcc ccctttctta cttttttgct
     3841 ttactgtcac aaaaacagga ttaagatggg tctatacttt gcacgttcac tcgggattgc
     3901 caatccaagg aaagcctata ggtagaaaca tttgaaataa ctgctaatcc aggaaaataa
     3961 gagaattaaa aaaaaaaaaa tcacagcccc atttctgtca gattgggctg gagctttact
     4021 taggttccaa gtggcctcct aggagccatg gaacaaaatg gggaacaggt tagcaggggg
     4081 ttcaaaatac cagacatgaa gtcaaggaga gtgactcttc ttgtttgcag gtgaactgaa
     4141 tctatttctt caccaaatct ctatgttaaa attaaaggga agaagtgaca tgcaaggaga
     4201 tcttaaaaga aaaatgcagg ctgagcatga gtcatgtcat taagctccta agtgtttcta
     4261 caatccacag agacacctgt ctacaggtcc ttgaagttac tcttagtatt tggtatccca
     4321 agcgtccttc atggttccat gccactttct ccgtgctcag cggtatcttc atgtgcttgt
     4381 ccacctctcc taaggaggcc cctgacaact ctccaggttg cactgatttc ccaattctgt
     4441 agaatcagtt aagctcatgg caggggagag aaagcagtca agcagtgaag agattctcta
     4501 aattactcta atattgcatt tgaagacctt gactcattct tagtctattt caatttttaa
     4561 gaagtcccac tgtaattaaa actctaaaat ttctgtttca aactcttcag gcatttggag
     4621 tcccattctg gagaatttcc ggaataaata aaatcttctg ttgagagcaa tgaacaacat
     4681 tttcctcagt atgaaaaatc actgtaaatt ttcaggttgc aaaaacagat gaaaattgag
     4741 aggaaatttt ctttccaact ggttctggtc actcaccgag gtggcgtatc tgttgggaca
     4801 ggctctctgt ccatagaatg agaggttccc ttgataggaa aggtcagctg actcctcggg
     4861 gctacctgct gtggcccccg gatttgggtt cacagaggca tctccaggat gtttaaatgc
     4921 caccatccct gtttataaac tcaggagtgc agtggcaatc caaaggagtg tgaacctacg
     4981 ttacccgcat acgggaaact tttgtgggtc ttcaggtagc agaaattgcc cagaagtttg
     5041 acggcgacgt tgtttcctgg gtctgaaatc atatcccgct gagaaatgtg gagtggagca
     5101 tagtatatga aaaactcctt tttctcactc cagattcctt tactacccta ctctccttcc
     5161 ttgcctggta ggacttttgt tcttgagagt acctagacag tctcgtgctt tctacaaaat
     5221 ggcactctgc ctgggtattt atgaatgtgt cccaaagagc aacatgccgt atcttcctta
     5281 tttaagtgcg actgtcttga tatagttaga gtttatccag ggtcatttgc tcagtaactt
     5341 ttttttttgg cccggggttg aaaggtgcat ggctcacatt ggtgaaaata aggaagacct
     5401 agttttatct tttagttctg gctgcttccc accagccaca aagattt
//
LOCUS       XM_032618349            5052 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X7, mRNA.
ACCESSION   XM_032618349
VERSION     XM_032618349.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5052
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5052
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 4
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746724"
     CDS             211..1998
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X7"
                     /protein_id="XP_032474240.1"
                     /db_xref="GeneID:116746724"
                     /translation="MKSQESAAGSRLVLRCETSSEYSSLKFRWFKNGNELNRKNKPQN
                     IKIQKRPGKSELRINKASLADSGEYMCKVISKLGNDSASANITIVDANEIITGMPAST
                     ETAYVSSESPIRISVSTEGANTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKD
                     LSNPSRYLCKCPNEFTGDRCQNYVMASFYKAEELYQKRVLTITGICIALLVVGIMCVV
                     AYCKTKKQRKKLHDRLRQSLRSERNNMVNIANGPHHPNPPPENVQLVNQYVSKNVISS
                     EHIVEREAETSFSTSHYTSTAHHSTTVTQTPSHSWSNGHTESIISESHSVIVMSSVEN
                     SRHSSPTGGPRGRLNGLGGPRECNSFLRHARETPDSYRDSPHSERYVSAMTTPARMSP
                     VDFHTPSSPKSPPSEMSPPVSSTTVSMPSMAVSPFVEEERPLLLVTPPWLRERDVQHV
                     QQFSSFHCNPAHESRSPPPSPLRIVEDEEYETTQEYELTQESVKKLTNSRRAKRTKPN
                     GHIAHRLEMDSNTSAESSNSESETEDERVGEDTPFLGIQNPLAANVEAAPAFHLADSR
                     TNPAGRFSPQEELQARLSGVIANQDPIAV"
     misc_feature    211..474
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    238..264
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    283..300
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    340..357
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    370..384
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    412..429
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    448..474
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    <631..900
                     /gene="NRG1"
                     /note="epidermal growth factor-like protein (EGF-like
                     protein); Provisional; Region: PHA03099"
                     /db_xref="CDD:165381"
     misc_feature    655..747
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    877..1941
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 gccatacatc tatgagaacg tttgctttac atgattctgg atcattacgc ggtgctgatt
       61 accctggcct ttcactgttg tccttcgcag cagggtgcta acgttttctg gatttcactg
      121 ctctttagaa ttctccacca gagggaggac aagggaaggc gaagtaggtt tcacccgcag
      181 ttctgagcct tgcctccccg attgaaagag atgaaaagtc aggagtctgc agcaggttca
      241 agactcgtgc ttcggtgcga gaccagttct gaatactcct ctctcaaatt cagatggttc
      301 aagaatggga atgaattaaa ccgaaagaac aaaccacaaa acatcaagat acaaaaaagg
      361 ccagggaagt cagaacttcg cattaacaaa gcgtcactgg ctgattctgg agaatacatg
      421 tgcaaagtga tcagcaaatt aggaaacgac agtgcttctg ccaatatcac cattgtggat
      481 gcaaatgaga tcatcactgg catgccagcc tcaactgaga cagcgtatgt gtcttcagag
      541 tctcccatta gaatatcagt gtcaacagaa ggagcaaata cttcttcatc cacatctaca
      601 tctaccactg ggacaagcca tcttgtcaag tgtgcagaga aggagaaaac tttctgtgtg
      661 aatggaggcg agtgcttcat ggtgaaagac ctttcaaacc cctcaagata cttgtgcaag
      721 tgcccaaatg agtttactgg tgatcgctgc caaaactacg taatggccag cttctacaaa
      781 gcggaggagc tctaccagaa gagagtactc accatcaccg gcatctgcat tgcgctgctt
      841 gtggtcggca tcatgtgtgt ggtggcctac tgcaaaacca agaagcaacg gaaaaagctt
      901 catgaccggc ttcggcagag tcttcgctct gaacgaaaca acatggtgaa catagccaac
      961 gggccccatc accccaatcc accccccgag aacgtgcagc tggtgaatca atacgtatct
     1021 aaaaatgtca tctccagcga gcatattgtc gagagagagg cggagacgtc tttttccacc
     1081 agtcactaca cttcgacagc tcatcactcc actactgtca cccagactcc cagtcacagc
     1141 tggagcaacg gacacactga aagcatcatt tcagaaagcc actctgtcat cgtgatgtca
     1201 tctgtagaaa acagtaggca cagcagccct actgggggcc caagaggacg tcttaatggc
     1261 ttgggaggcc ctcgcgagtg taacagcttc ctcaggcatg ccagagaaac ccctgactcc
     1321 taccgagatt ctcctcatag tgaaaggtat gtatcagcaa tgaccacccc ggctcgtatg
     1381 tcacctgtag atttccacac gccaagctcc cccaaatcgc ccccttcgga aatgtctcca
     1441 cccgtgtcca gcacgacggt gtccatgccc tccatggcag tcagtccctt cgtggaagaa
     1501 gagagacccc tgcttcttgt gacaccgcca tggctgcggg agagggatgt ccagcacgtt
     1561 cagcagttca gctccttcca ctgcaacccc gcgcacgaga gccgcagccc accccctagc
     1621 cccttgagga tagtggagga tgaagagtat gaaacgaccc aggagtatga actgactcaa
     1681 gagtcggtta agaaactcac caacagccgg cgggctaaaa gaaccaagcc caatggtcat
     1741 attgcccaca gattggaaat ggacagcaac acaagcgctg agagcagtaa ctcagagagt
     1801 gaaacagagg atgaaagagt aggagaagat acacctttcc tgggcataca gaacccactg
     1861 gcagccaatg ttgaggcagc ccctgccttc cacctggctg acagcaggac taacccagca
     1921 ggccgcttct ctccgcagga agaattgcag gccaggctgt ccggtgtaat cgctaaccaa
     1981 gaccctattg ctgtataaaa ccgaaataaa cccatagatt cacctgtaaa actttatttt
     2041 atataataaa gtattccacc ttaaattaaa caatttattt tattttagca gtcctgcaaa
     2101 tagaaaacag gaaaaaaaat cttttataaa ttaaatatat gtatgtacaa atgtgttatg
     2161 tgccatatgt agcaattttt tacagtattt ccaaacgaga aagatatcaa tggtgccttt
     2221 atgttatgtt atgtcgagag caagttttgt actgttcctg tgattgcttt ctcacagtat
     2281 ttcagcaaac cctctcccac ccccgcaaat tccgtttttg ctggcttctt gtgcattgca
     2341 ttatgacgtt gactcgatgt atgatttaca ggatttgcaa ctgtccctct gtctgcttca
     2401 agtagtactc aatcagtacg tcttgtaatg gcacatccat ccaaatactc cccttctgta
     2461 tgaaatattc ttttgctttc agtatatgaa atgagttgtg tctacgactc tgccagccaa
     2521 aggtctgctt cactgagctc tgagataata gtagatccag cagcgtttta cggttaatta
     2581 cagcaggaaa ctgcattaag tcatgttaaa tattaggaag aaagtaatat tgtgattttt
     2641 tttttttttc aaaaacggta tgattcatca gaagacagct tgcttgacaa aaggagctac
     2701 catttacttt attttgattg gttttttttc tcggccaaaa aaaaaaccca agttttcggg
     2761 atagcaaaga aaaggggttc tggctaccga tcagggtaaa acccaacccc taagtcgagg
     2821 actcggtttc actttctctc tctgggggaa tgatacagcg gctcatctag ctgaagagca
     2881 aaccatggct gaaaaaggtg caatcgttcc tgacttgtgt tttttcactg attttggagc
     2941 tagtgaccgg ttgtgtcttc ttggctcaag gacagatata ttatggcaca aataccccag
     3001 cttcaacagc acactcagca atttgtctga aataccttct agagtgaaat gtgcctgctg
     3061 tatatactgg tgacgtcatc gtagggaaat ccttcttaga ctgtctagag gagtgaatat
     3121 atagaagaca cgggggagag cagctgtgtg acctggttag taatttttaa gttttttgac
     3181 cattcctttg tcctcattat gttcctctca tttttcaatg ttgccttgat tcagtcataa
     3241 ctatgcatga acatttttgt caggaatggc cagtgtgcac gtgatttgtg attagtaaga
     3301 acctcctacg agtgatgact catcaggaaa tggcaatagt cttggaaaga ttgcaccttt
     3361 ccttgcagaa atgactccca cctgtgtgct aacctctctg tttacagctg tatcacccgt
     3421 tttccccctt tcttactttt ttgctttact gtcacaaaaa caggattaag atgggtctat
     3481 actttgcacg ttcactcggg attgccaatc caaggaaagc ctataggtag aaacatttga
     3541 aataactgct aatccaggaa aataagagaa ttaaaaaaaa aaaaatcaca gccccatttc
     3601 tgtcagattg ggctggagct ttacttaggt tccaagtggc ctcctaggag ccatggaaca
     3661 aaatggggaa caggttagca gggggttcaa aataccagac atgaagtcaa ggagagtgac
     3721 tcttcttgtt tgcaggtgaa ctgaatctat ttcttcacca aatctctatg ttaaaattaa
     3781 agggaagaag tgacatgcaa ggagatctta aaagaaaaat gcaggctgag catgagtcat
     3841 gtcattaagc tcctaagtgt ttctacaatc cacagagaca cctgtctaca ggtccttgaa
     3901 gttactctta gtatttggta tcccaagcgt ccttcatggt tccatgccac tttctccgtg
     3961 ctcagcggta tcttcatgtg cttgtccacc tctcctaagg aggcccctga caactctcca
     4021 ggttgcactg atttcccaat tctgtagaat cagttaagct catggcaggg gagagaaagc
     4081 agtcaagcag tgaagagatt ctctaaatta ctctaatatt gcatttgaag accttgactc
     4141 attcttagtc tatttcaatt tttaagaagt cccactgtaa ttaaaactct aaaatttctg
     4201 tttcaaactc ttcaggcatt tggagtccca ttctggagaa tttccggaat aaataaaatc
     4261 ttctgttgag agcaatgaac aacattttcc tcagtatgaa aaatcactgt aaattttcag
     4321 gttgcaaaaa cagatgaaaa ttgagaggaa attttctttc caactggttc tggtcactca
     4381 ccgaggtggc gtatctgttg ggacaggctc tctgtccata gaatgagagg ttcccttgat
     4441 aggaaaggtc agctgactcc tcggggctac ctgctgtggc ccccggattt gggttcacag
     4501 aggcatctcc aggatgttta aatgccacca tccctgttta taaactcagg agtgcagtgg
     4561 caatccaaag gagtgtgaac ctacgttacc cgcatacggg aaacttttgt gggtcttcag
     4621 gtagcagaaa ttgcccagaa gtttgacggc gacgttgttt cctgggtctg aaatcatatc
     4681 ccgctgagaa atgtggagtg gagcatagta tatgaaaaac tcctttttct cactccagat
     4741 tcctttacta ccctactctc cttccttgcc tggtaggact tttgttcttg agagtaccta
     4801 gacagtctcg tgctttctac aaaatggcac tctgcctggg tatttatgaa tgtgtcccaa
     4861 agagcaacat gccgtatctt ccttatttaa gtgcgactgt cttgatatag ttagagttta
     4921 tccagggtca tttgctcagt aacttttttt tttggcccgg ggttgaaagg tgcatggctc
     4981 acattggtga aaataaggaa gacctagttt tatcttttag ttctggctgc ttcccaccag
     5041 ccacaaagat tt
//
LOCUS       XM_032618351            5598 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X8, mRNA.
ACCESSION   XM_032618351
VERSION     XM_032618351.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5598
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5598
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746724"
     CDS             486..1871
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X8"
                     /protein_id="XP_032474242.1"
                     /db_xref="GeneID:116746724"
                     /translation="MSERKEGRGKGKGKKDRGSGKKPAPAAGGPSPALPPRLKEMKSQ
                     ESAAGSRLVLRCETSSEYSSLKFRWFKNGNELNRKNKPQNIKIQKRPGKSELRINKAS
                     LADSGEYMCKVISKLGNDSASANITIVDANEIITGMPASTETAYVSSESPIRISVSTE
                     GANTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA
                     RCTESVPMKVQTQEKAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQRKKLHDR
                     LRQSLRSERNNMVNIANGPHHPNPPPENVQLVNQYVSKNVISSEHIVEREAETSFSTS
                     HYTSTAHHSTTVTQTPSHSWSNGHTESIISESHSVIVMSSVENSRHSSPTGGPRGRLN
                     GLGGPRECNSFLRHARETPDSYRDSPHSERHNLIAELRRNKAHRSKCMQIQLSETHLR
                     ASSIPHLGFIL"
     misc_feature    591..869
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    591..611
                     /gene="NRG1"
                     /note="putative Ig strand A [structural motif]; Region:
                     putative Ig strand A"
                     /db_xref="CDD:409476"
     misc_feature    633..659
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    678..695
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    735..752
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    765..779
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    807..824
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    843..869
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    <1026..1304
                     /gene="NRG1"
                     /note="epidermal growth factor-like protein (EGF-like
                     protein); Provisional; Region: PHA03099"
                     /db_xref="CDD:165381"
     misc_feature    1050..1142
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    1281..>1754
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 attgaaaaag agccggcgag gagttccccc caacttgtcg aaactccggg ctcgcgcgga
       61 gggcaggagc ggggtgactg cggctgccgg gcgacgcaag cgctggccgg acggttatcg
      121 cctctccctc ctcgggctgc gagcgcgccg gacagaggcc gcgacaggag ccgacagcgg
      181 cgggaaccga gcacttccct gcgcgacagg agccgccccg agagcgagcg cgaccgccgg
      241 acgcagcgac cgccagtccc aggtggcccg gaccgcacgc cgcgtccccg cgctccccgc
      301 cggcgacagg agacgccccc cgcgcagcgc gcgagccgca gcccggccgg tggttctacc
      361 cgcctccgcc ccccgccctc gagggacaaa cttttcccaa agccgatccc agcccttgga
      421 ccaaacttgt cgcgcgtcgc ctccgccggg cgccgtccgc gcagagcgtg cacttctcgg
      481 gcgagatgtc ggagcgcaaa gaaggcagag gcaaggggaa gggcaagaag gaccgaggct
      541 ccgggaagaa gcccgcgccc gcggcgggcg gcccgagccc agccttgcct ccccgattga
      601 aagagatgaa aagtcaggag tctgcagcag gttcaagact cgtgcttcgg tgcgagacca
      661 gttctgaata ctcctctctc aaattcagat ggttcaagaa tgggaatgaa ttaaaccgaa
      721 agaacaaacc acaaaacatc aagatacaaa aaaggccagg gaagtcagaa cttcgcatta
      781 acaaagcgtc actggctgat tctggagaat acatgtgcaa agtgatcagc aaattaggaa
      841 acgacagtgc ttctgccaat atcaccattg tggatgcaaa tgagatcatc actggcatgc
      901 cagcctcaac tgagacagcg tatgtgtctt cagagtctcc cattagaata tcagtgtcaa
      961 cagaaggagc aaatacttct tcatccacat ctacatctac cactgggaca agccatcttg
     1021 tcaagtgtgc agagaaggag aaaactttct gtgtgaatgg aggcgagtgc ttcatggtga
     1081 aagacctttc aaacccctca agatacttgt gcaagtgcca acctggattc actggagcga
     1141 gatgtactga gagtgtgccc atgaaagtcc aaacccaaga aaaagcggag gagctctacc
     1201 agaagagagt actcaccatc accggcatct gcattgcgct gcttgtggtc ggcatcatgt
     1261 gtgtggtggc ctactgcaaa accaagaagc aacggaaaaa gcttcatgac cggcttcggc
     1321 agagtcttcg ctctgaacga aacaacatgg tgaacatagc caacgggccc catcacccca
     1381 atccaccccc cgagaacgtg cagctggtga atcaatacgt atctaaaaat gtcatctcca
     1441 gcgagcatat tgtcgagaga gaggcggaga cgtctttttc caccagtcac tacacttcga
     1501 cagctcatca ctccactact gtcacccaga ctcccagtca cagctggagc aacggacaca
     1561 ctgaaagcat catttcagaa agccactctg tcatcgtgat gtcatctgta gaaaacagta
     1621 ggcacagcag ccctactggg ggcccaagag gacgtcttaa tggcttggga ggccctcgcg
     1681 agtgtaacag cttcctcagg catgccagag aaacccctga ctcctaccga gattctcctc
     1741 atagtgaaag acataacctt atagctgagc taaggagaaa caaggcccac agatccaaat
     1801 gcatgcagat ccagctttcc gaaactcatc ttagagcttc ttccattccc catttgggct
     1861 tcattctcta agaccccttg gcctttggga aggtatgtat cagcaatgac caccccggct
     1921 cgtatgtcac ctgtagattt ccacacgcca agctccccca aatcgccccc ttcggaaatg
     1981 tctccacccg tgtccagcac gacggtgtcc atgccctcca tggcagtcag tcccttcgtg
     2041 gaagaagaga gacccctgct tcttgtgaca ccgccatggc tgcgggagag ggatgtccag
     2101 cacgttcagc agttcagctc cttccactgc aaccccgcgc acgagagccg cagcccaccc
     2161 cctagcccct tgaggatagt ggaggatgaa gagtatgaaa cgacccagga gtatgaactg
     2221 actcaagagt cggttaagaa actcaccaac agccggcggg ctaaaagaac caagcccaat
     2281 ggtcatattg cccacagatt ggaaatggac agcaacacaa gcgctgagag cagtaactca
     2341 gagagtgaaa cagaggatga aagagtagga gaagatacac ctttcctggg catacagaac
     2401 ccactggcag ccaatgttga ggcagcccct gccttccacc tggctgacag caggactaac
     2461 ccagcaggcc gcttctctcc gcaggaagaa ttgcaggcca ggctgtccgg tgtaatcgct
     2521 aaccaagacc ctattgctgt ataaaaccga aataaaccca tagattcacc tgtaaaactt
     2581 tattttatat aataaagtat tccaccttaa attaaacaat ttattttatt ttagcagtcc
     2641 tgcaaataga aaacaggaaa aaaaatcttt tataaattaa atatatgtat gtacaaatgt
     2701 gttatgtgcc atatgtagca attttttaca gtatttccaa acgagaaaga tatcaatggt
     2761 gcctttatgt tatgttatgt cgagagcaag ttttgtactg ttcctgtgat tgctttctca
     2821 cagtatttca gcaaaccctc tcccaccccc gcaaattccg tttttgctgg cttcttgtgc
     2881 attgcattat gacgttgact cgatgtatga tttacaggat ttgcaactgt ccctctgtct
     2941 gcttcaagta gtactcaatc agtacgtctt gtaatggcac atccatccaa atactcccct
     3001 tctgtatgaa atattctttt gctttcagta tatgaaatga gttgtgtcta cgactctgcc
     3061 agccaaaggt ctgcttcact gagctctgag ataatagtag atccagcagc gttttacggt
     3121 taattacagc aggaaactgc attaagtcat gttaaatatt aggaagaaag taatattgtg
     3181 attttttttt tttttcaaaa acggtatgat tcatcagaag acagcttgct tgacaaaagg
     3241 agctaccatt tactttattt tgattggttt tttttctcgg ccaaaaaaaa aacccaagtt
     3301 ttcgggatag caaagaaaag gggttctggc taccgatcag ggtaaaaccc aacccctaag
     3361 tcgaggactc ggtttcactt tctctctctg ggggaatgat acagcggctc atctagctga
     3421 agagcaaacc atggctgaaa aaggtgcaat cgttcctgac ttgtgttttt tcactgattt
     3481 tggagctagt gaccggttgt gtcttcttgg ctcaaggaca gatatattat ggcacaaata
     3541 ccccagcttc aacagcacac tcagcaattt gtctgaaata ccttctagag tgaaatgtgc
     3601 ctgctgtata tactggtgac gtcatcgtag ggaaatcctt cttagactgt ctagaggagt
     3661 gaatatatag aagacacggg ggagagcagc tgtgtgacct ggttagtaat ttttaagttt
     3721 tttgaccatt cctttgtcct cattatgttc ctctcatttt tcaatgttgc cttgattcag
     3781 tcataactat gcatgaacat ttttgtcagg aatggccagt gtgcacgtga tttgtgatta
     3841 gtaagaacct cctacgagtg atgactcatc aggaaatggc aatagtcttg gaaagattgc
     3901 acctttcctt gcagaaatga ctcccacctg tgtgctaacc tctctgttta cagctgtatc
     3961 acccgttttc cccctttctt acttttttgc tttactgtca caaaaacagg attaagatgg
     4021 gtctatactt tgcacgttca ctcgggattg ccaatccaag gaaagcctat aggtagaaac
     4081 atttgaaata actgctaatc caggaaaata agagaattaa aaaaaaaaaa atcacagccc
     4141 catttctgtc agattgggct ggagctttac ttaggttcca agtggcctcc taggagccat
     4201 ggaacaaaat ggggaacagg ttagcagggg gttcaaaata ccagacatga agtcaaggag
     4261 agtgactctt cttgtttgca ggtgaactga atctatttct tcaccaaatc tctatgttaa
     4321 aattaaaggg aagaagtgac atgcaaggag atcttaaaag aaaaatgcag gctgagcatg
     4381 agtcatgtca ttaagctcct aagtgtttct acaatccaca gagacacctg tctacaggtc
     4441 cttgaagtta ctcttagtat ttggtatccc aagcgtcctt catggttcca tgccactttc
     4501 tccgtgctca gcggtatctt catgtgcttg tccacctctc ctaaggaggc ccctgacaac
     4561 tctccaggtt gcactgattt cccaattctg tagaatcagt taagctcatg gcaggggaga
     4621 gaaagcagtc aagcagtgaa gagattctct aaattactct aatattgcat ttgaagacct
     4681 tgactcattc ttagtctatt tcaattttta agaagtccca ctgtaattaa aactctaaaa
     4741 tttctgtttc aaactcttca ggcatttgga gtcccattct ggagaatttc cggaataaat
     4801 aaaatcttct gttgagagca atgaacaaca ttttcctcag tatgaaaaat cactgtaaat
     4861 tttcaggttg caaaaacaga tgaaaattga gaggaaattt tctttccaac tggttctggt
     4921 cactcaccga ggtggcgtat ctgttgggac aggctctctg tccatagaat gagaggttcc
     4981 cttgatagga aaggtcagct gactcctcgg ggctacctgc tgtggccccc ggatttgggt
     5041 tcacagaggc atctccagga tgtttaaatg ccaccatccc tgtttataaa ctcaggagtg
     5101 cagtggcaat ccaaaggagt gtgaacctac gttacccgca tacgggaaac ttttgtgggt
     5161 cttcaggtag cagaaattgc ccagaagttt gacggcgacg ttgtttcctg ggtctgaaat
     5221 catatcccgc tgagaaatgt ggagtggagc atagtatatg aaaaactcct ttttctcact
     5281 ccagattcct ttactaccct actctccttc cttgcctggt aggacttttg ttcttgagag
     5341 tacctagaca gtctcgtgct ttctacaaaa tggcactctg cctgggtatt tatgaatgtg
     5401 tcccaaagag caacatgccg tatcttcctt atttaagtgc gactgtcttg atatagttag
     5461 agtttatcca gggtcatttg ctcagtaact tttttttttg gcccggggtt gaaaggtgca
     5521 tggctcacat tggtgaaaat aaggaagacc tagttttatc ttttagttct ggctgcttcc
     5581 caccagccac aaagattt
//
LOCUS       XM_032618352            5589 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X9, mRNA.
ACCESSION   XM_032618352
VERSION     XM_032618352.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5589
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5589
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746724"
     CDS             486..1862
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X9"
                     /protein_id="XP_032474243.1"
                     /db_xref="GeneID:116746724"
                     /translation="MSERKEGRGKGKGKKDRGSGKKPAPAAGGPSPALPPRLKEMKSQ
                     ESAAGSRLVLRCETSSEYSSLKFRWFKNGNELNRKNKPQNIKIQKRPGKSELRINKAS
                     LADSGEYMCKVISKLGNDSASANITIVDANEIITGMPASTETAYVSSESPIRISVSTE
                     GANTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD
                     RCQNYVMASFYKAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQRKKLHDRLRQ
                     SLRSERNNMVNIANGPHHPNPPPENVQLVNQYVSKNVISSEHIVEREAETSFSTSHYT
                     STAHHSTTVTQTPSHSWSNGHTESIISESHSVIVMSSVENSRHSSPTGGPRGRLNGLG
                     GPRECNSFLRHARETPDSYRDSPHSERHNLIAELRRNKAHRSKCMQIQLSETHLRASS
                     IPHLGFIL"
     misc_feature    591..869
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    591..611
                     /gene="NRG1"
                     /note="putative Ig strand A [structural motif]; Region:
                     putative Ig strand A"
                     /db_xref="CDD:409476"
     misc_feature    633..659
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    678..695
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    735..752
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    765..779
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    807..824
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    843..869
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    <1026..1295
                     /gene="NRG1"
                     /note="epidermal growth factor-like protein (EGF-like
                     protein); Provisional; Region: PHA03099"
                     /db_xref="CDD:165381"
     misc_feature    1272..>1745
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 attgaaaaag agccggcgag gagttccccc caacttgtcg aaactccggg ctcgcgcgga
       61 gggcaggagc ggggtgactg cggctgccgg gcgacgcaag cgctggccgg acggttatcg
      121 cctctccctc ctcgggctgc gagcgcgccg gacagaggcc gcgacaggag ccgacagcgg
      181 cgggaaccga gcacttccct gcgcgacagg agccgccccg agagcgagcg cgaccgccgg
      241 acgcagcgac cgccagtccc aggtggcccg gaccgcacgc cgcgtccccg cgctccccgc
      301 cggcgacagg agacgccccc cgcgcagcgc gcgagccgca gcccggccgg tggttctacc
      361 cgcctccgcc ccccgccctc gagggacaaa cttttcccaa agccgatccc agcccttgga
      421 ccaaacttgt cgcgcgtcgc ctccgccggg cgccgtccgc gcagagcgtg cacttctcgg
      481 gcgagatgtc ggagcgcaaa gaaggcagag gcaaggggaa gggcaagaag gaccgaggct
      541 ccgggaagaa gcccgcgccc gcggcgggcg gcccgagccc agccttgcct ccccgattga
      601 aagagatgaa aagtcaggag tctgcagcag gttcaagact cgtgcttcgg tgcgagacca
      661 gttctgaata ctcctctctc aaattcagat ggttcaagaa tgggaatgaa ttaaaccgaa
      721 agaacaaacc acaaaacatc aagatacaaa aaaggccagg gaagtcagaa cttcgcatta
      781 acaaagcgtc actggctgat tctggagaat acatgtgcaa agtgatcagc aaattaggaa
      841 acgacagtgc ttctgccaat atcaccattg tggatgcaaa tgagatcatc actggcatgc
      901 cagcctcaac tgagacagcg tatgtgtctt cagagtctcc cattagaata tcagtgtcaa
      961 cagaaggagc aaatacttct tcatccacat ctacatctac cactgggaca agccatcttg
     1021 tcaagtgtgc agagaaggag aaaactttct gtgtgaatgg aggcgagtgc ttcatggtga
     1081 aagacctttc aaacccctca agatacttgt gcaagtgccc aaatgagttt actggtgatc
     1141 gctgccaaaa ctacgtaatg gccagcttct acaaagcgga ggagctctac cagaagagag
     1201 tactcaccat caccggcatc tgcattgcgc tgcttgtggt cggcatcatg tgtgtggtgg
     1261 cctactgcaa aaccaagaag caacggaaaa agcttcatga ccggcttcgg cagagtcttc
     1321 gctctgaacg aaacaacatg gtgaacatag ccaacgggcc ccatcacccc aatccacccc
     1381 ccgagaacgt gcagctggtg aatcaatacg tatctaaaaa tgtcatctcc agcgagcata
     1441 ttgtcgagag agaggcggag acgtcttttt ccaccagtca ctacacttcg acagctcatc
     1501 actccactac tgtcacccag actcccagtc acagctggag caacggacac actgaaagca
     1561 tcatttcaga aagccactct gtcatcgtga tgtcatctgt agaaaacagt aggcacagca
     1621 gccctactgg gggcccaaga ggacgtctta atggcttggg aggccctcgc gagtgtaaca
     1681 gcttcctcag gcatgccaga gaaacccctg actcctaccg agattctcct catagtgaaa
     1741 gacataacct tatagctgag ctaaggagaa acaaggccca cagatccaaa tgcatgcaga
     1801 tccagctttc cgaaactcat cttagagctt cttccattcc ccatttgggc ttcattctct
     1861 aagacccctt ggcctttggg aaggtatgta tcagcaatga ccaccccggc tcgtatgtca
     1921 cctgtagatt tccacacgcc aagctccccc aaatcgcccc cttcggaaat gtctccaccc
     1981 gtgtccagca cgacggtgtc catgccctcc atggcagtca gtcccttcgt ggaagaagag
     2041 agacccctgc ttcttgtgac accgccatgg ctgcgggaga gggatgtcca gcacgttcag
     2101 cagttcagct ccttccactg caaccccgcg cacgagagcc gcagcccacc ccctagcccc
     2161 ttgaggatag tggaggatga agagtatgaa acgacccagg agtatgaact gactcaagag
     2221 tcggttaaga aactcaccaa cagccggcgg gctaaaagaa ccaagcccaa tggtcatatt
     2281 gcccacagat tggaaatgga cagcaacaca agcgctgaga gcagtaactc agagagtgaa
     2341 acagaggatg aaagagtagg agaagataca cctttcctgg gcatacagaa cccactggca
     2401 gccaatgttg aggcagcccc tgccttccac ctggctgaca gcaggactaa cccagcaggc
     2461 cgcttctctc cgcaggaaga attgcaggcc aggctgtccg gtgtaatcgc taaccaagac
     2521 cctattgctg tataaaaccg aaataaaccc atagattcac ctgtaaaact ttattttata
     2581 taataaagta ttccacctta aattaaacaa tttattttat tttagcagtc ctgcaaatag
     2641 aaaacaggaa aaaaaatctt ttataaatta aatatatgta tgtacaaatg tgttatgtgc
     2701 catatgtagc aattttttac agtatttcca aacgagaaag atatcaatgg tgcctttatg
     2761 ttatgttatg tcgagagcaa gttttgtact gttcctgtga ttgctttctc acagtatttc
     2821 agcaaaccct ctcccacccc cgcaaattcc gtttttgctg gcttcttgtg cattgcatta
     2881 tgacgttgac tcgatgtatg atttacagga tttgcaactg tccctctgtc tgcttcaagt
     2941 agtactcaat cagtacgtct tgtaatggca catccatcca aatactcccc ttctgtatga
     3001 aatattcttt tgctttcagt atatgaaatg agttgtgtct acgactctgc cagccaaagg
     3061 tctgcttcac tgagctctga gataatagta gatccagcag cgttttacgg ttaattacag
     3121 caggaaactg cattaagtca tgttaaatat taggaagaaa gtaatattgt gatttttttt
     3181 ttttttcaaa aacggtatga ttcatcagaa gacagcttgc ttgacaaaag gagctaccat
     3241 ttactttatt ttgattggtt ttttttctcg gccaaaaaaa aaacccaagt tttcgggata
     3301 gcaaagaaaa ggggttctgg ctaccgatca gggtaaaacc caacccctaa gtcgaggact
     3361 cggtttcact ttctctctct gggggaatga tacagcggct catctagctg aagagcaaac
     3421 catggctgaa aaaggtgcaa tcgttcctga cttgtgtttt ttcactgatt ttggagctag
     3481 tgaccggttg tgtcttcttg gctcaaggac agatatatta tggcacaaat accccagctt
     3541 caacagcaca ctcagcaatt tgtctgaaat accttctaga gtgaaatgtg cctgctgtat
     3601 atactggtga cgtcatcgta gggaaatcct tcttagactg tctagaggag tgaatatata
     3661 gaagacacgg gggagagcag ctgtgtgacc tggttagtaa tttttaagtt ttttgaccat
     3721 tcctttgtcc tcattatgtt cctctcattt ttcaatgttg ccttgattca gtcataacta
     3781 tgcatgaaca tttttgtcag gaatggccag tgtgcacgtg atttgtgatt agtaagaacc
     3841 tcctacgagt gatgactcat caggaaatgg caatagtctt ggaaagattg cacctttcct
     3901 tgcagaaatg actcccacct gtgtgctaac ctctctgttt acagctgtat cacccgtttt
     3961 ccccctttct tacttttttg ctttactgtc acaaaaacag gattaagatg ggtctatact
     4021 ttgcacgttc actcgggatt gccaatccaa ggaaagccta taggtagaaa catttgaaat
     4081 aactgctaat ccaggaaaat aagagaatta aaaaaaaaaa aatcacagcc ccatttctgt
     4141 cagattgggc tggagcttta cttaggttcc aagtggcctc ctaggagcca tggaacaaaa
     4201 tggggaacag gttagcaggg ggttcaaaat accagacatg aagtcaagga gagtgactct
     4261 tcttgtttgc aggtgaactg aatctatttc ttcaccaaat ctctatgtta aaattaaagg
     4321 gaagaagtga catgcaagga gatcttaaaa gaaaaatgca ggctgagcat gagtcatgtc
     4381 attaagctcc taagtgtttc tacaatccac agagacacct gtctacaggt ccttgaagtt
     4441 actcttagta tttggtatcc caagcgtcct tcatggttcc atgccacttt ctccgtgctc
     4501 agcggtatct tcatgtgctt gtccacctct cctaaggagg cccctgacaa ctctccaggt
     4561 tgcactgatt tcccaattct gtagaatcag ttaagctcat ggcaggggag agaaagcagt
     4621 caagcagtga agagattctc taaattactc taatattgca tttgaagacc ttgactcatt
     4681 cttagtctat ttcaattttt aagaagtccc actgtaatta aaactctaaa atttctgttt
     4741 caaactcttc aggcatttgg agtcccattc tggagaattt ccggaataaa taaaatcttc
     4801 tgttgagagc aatgaacaac attttcctca gtatgaaaaa tcactgtaaa ttttcaggtt
     4861 gcaaaaacag atgaaaattg agaggaaatt ttctttccaa ctggttctgg tcactcaccg
     4921 aggtggcgta tctgttggga caggctctct gtccatagaa tgagaggttc ccttgatagg
     4981 aaaggtcagc tgactcctcg gggctacctg ctgtggcccc cggatttggg ttcacagagg
     5041 catctccagg atgtttaaat gccaccatcc ctgtttataa actcaggagt gcagtggcaa
     5101 tccaaaggag tgtgaaccta cgttacccgc atacgggaaa cttttgtggg tcttcaggta
     5161 gcagaaattg cccagaagtt tgacggcgac gttgtttcct gggtctgaaa tcatatcccg
     5221 ctgagaaatg tggagtggag catagtatat gaaaaactcc tttttctcac tccagattcc
     5281 tttactaccc tactctcctt ccttgcctgg taggactttt gttcttgaga gtacctagac
     5341 agtctcgtgc tttctacaaa atggcactct gcctgggtat ttatgaatgt gtcccaaaga
     5401 gcaacatgcc gtatcttcct tatttaagtg cgactgtctt gatatagtta gagtttatcc
     5461 agggtcattt gctcagtaac tttttttttt ggcccggggt tgaaaggtgc atggctcaca
     5521 ttggtgaaaa taaggaagac ctagttttat cttttagttc tggctgcttc ccaccagcca
     5581 caaagattt
//
LOCUS       XM_032618353            1692 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X10, mRNA.
ACCESSION   XM_032618353
VERSION     XM_032618353.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1692
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 55% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746724"
     CDS             1..1233
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X10"
                     /protein_id="XP_032474244.1"
                     /db_xref="GeneID:116746724"
                     /translation="MRWRRAPRRSERTGPRAPRPGPAARSPPPPPLLLLLLWTAALAP
                     GAAASDEAAPAGASVCYASPPSVGSVQELAQRAAVVIEGKVHAPRRQQGALDRKAAAG
                     EAGVWGGERQPSAAGPGALPAANRTVHPWPTGPALSAAEPGDEAPYLVKVHQVWAVKA
                     GGLKKDSLLTVRLGAWGHPAFPSCGRLKEDSRYIFFMEPDANSSGRAPAAFRASFPPL
                     ETGRNLKKEVSRVLCKRCALPPRLKEMKSQESAAGSRLVLRCETSSEYSSLKFRWFKN
                     GNELNRKNKPQNIKIQKRPGKSELRINKASLADSGEYMCKVISKLGNDSASANITIVD
                     ANATSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQN
                     YVMASFYSTSTPFLSLPE"
     misc_feature    718..996
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    718..738
                     /gene="NRG1"
                     /note="putative Ig strand A [structural motif]; Region:
                     putative Ig strand A"
                     /db_xref="CDD:409476"
     misc_feature    760..786
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    805..822
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    862..879
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    892..906
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    934..951
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    970..996
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    1075..1167
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
ORIGIN      
        1 atgagatggc gacgcgcccc gcgccgctcc gagaggaccg gaccccgggc cccgcgcccc
       61 ggccctgccg cccgctcgcc gccgccgccg ccgctgctgc tgctgctgct gtggaccgcg
      121 gccctggcgc cgggggcggc cgccagcgac gaggcggctc ccgcgggggc ctcggtgtgc
      181 tacgcgtccc cgcccagcgt gggctcggtg caggagctgg ctcagcgcgc cgcggtggtg
      241 atagagggaa aggtgcacgc gccgcggcgg cagcaggggg cactcgacag gaaggcggcg
      301 gcgggcgagg caggggtgtg gggaggcgag cgccagccgt cagccgccgg cccgggagcg
      361 ctgcccgccg ccaaccggac cgtgcacccg tggcccacgg gccccgcgct cagcgccgcc
      421 gagcccggag acgaggcgcc ctatctggtg aaggtgcacc aggtgtgggc tgtgaaagcc
      481 gggggcttga agaaggactc gctgctcacc gtgcgcctgg gcgcctgggg ccaccccgcg
      541 ttcccctcct gcgggcggct caaggaggac agcaggtata tcttcttcat ggagcccgat
      601 gccaacagca gcggccgcgc gcctgccgcc ttccgagcat ccttcccccc tctcgagacg
      661 ggccggaacc tcaagaagga agtcagccgg gtgctgtgca agcggtgcgc cttgcctccc
      721 cgattgaaag agatgaaaag tcaggagtct gcagcaggtt caagactcgt gcttcggtgc
      781 gagaccagtt ctgaatactc ctctctcaaa ttcagatggt tcaagaatgg gaatgaatta
      841 aaccgaaaga acaaaccaca aaacatcaag atacaaaaaa ggccagggaa gtcagaactt
      901 cgcattaaca aagcgtcact ggctgattct ggagaataca tgtgcaaagt gatcagcaaa
      961 ttaggaaacg acagtgcttc tgccaatatc accattgtgg atgcaaatgc cacatctaca
     1021 tctaccactg ggacaagcca tcttgtcaag tgtgcagaga aggagaaaac tttctgtgtg
     1081 aatggaggcg agtgcttcat ggtgaaagac ctttcaaacc cctcaagata cttgtgcaag
     1141 tgcccaaatg agtttactgg tgatcgctgc caaaactacg taatggccag cttctacagt
     1201 acgtccactc cctttctgtc tctgcctgaa taggagcatg cccagtcggt gctgctttct
     1261 tgttgctgca tcttccctca gatttcacct agagctagat gtgttttacc aggtctaaca
     1321 ttgactgcct ctgcctgtcg catgagaaca ttaacaaaag caattgtatt acttcctctg
     1381 ttcatgacta gttggctccg agatgctcat aggtgtgtga ggctccgatg tttctgaaat
     1441 tgatcttgaa caatgtgata caaaatgata gtctgtatcg cacagtgcga tgatgataat
     1501 aaaggcattt aaaagtctca cttttattga taaaataaaa tcattccact ggacagtcca
     1561 tcttctttat aaaatgaccc catcctgaaa aggatgttcg ctaagttgta accagtacac
     1621 acttgaaatg atggtaagtt catttcggtt cagaatgtgt tacttctaac aaataaacag
     1681 aataaaaaga gt
//
LOCUS       XM_032618354            4389 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X11, mRNA.
ACCESSION   XM_032618354
VERSION     XM_032618354.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4389
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4389
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746724"
     CDS             190..1335
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X11"
                     /protein_id="XP_032474245.1"
                     /db_xref="GeneID:116746724"
                     /translation="MCVVAYCKTKKQRKKLHDRLRQSLRSERNNMVNIANGPHHPNPP
                     PENVQLVNQYVSKNVISSEHIVEREAETSFSTSHYTSTAHHSTTVTQTPSHSWSNGHT
                     ESIISESHSVIVMSSVENSRHSSPTGGPRGRLNGLGGPRECNSFLRHARETPDSYRDS
                     PHSERYVSAMTTPARMSPVDFHTPSSPKSPPSEMSPPVSSTTVSMPSMAVSPFVEEER
                     PLLLVTPPWLRERDVQHVQQFSSFHCNPAHESRSPPPSPLRIVEDEEYETTQEYELTQ
                     ESVKKLTNSRRAKRTKPNGHIAHRLEMDSNTSAESSNSESETEDERVGEDTPFLGIQN
                     PLAANVEAAPAFHLADSRTNPAGRFSPQEELQARLSGVIANQDPIAV"
     misc_feature    214..1278
                     /gene="NRG1"
                     /note="Neuregulin intracellular region; Region:
                     Neuregulin; pfam02158"
                     /db_xref="CDD:426627"
ORIGIN      
        1 ccactgggac aagccatctt gtcaagtgtg cagagaagga gaaaactttc tgtgtgaatg
       61 gaggcgagtg cttcatggtg aaagaccttt caaacccctc aagatacttg tgcaaaagcg
      121 gaggagctct accagaagag agtactcacc atcaccggca tctgcattgc gctgcttgtg
      181 gtcggcatca tgtgtgtggt ggcctactgc aaaaccaaga agcaacggaa aaagcttcat
      241 gaccggcttc ggcagagtct tcgctctgaa cgaaacaaca tggtgaacat agccaacggg
      301 ccccatcacc ccaatccacc ccccgagaac gtgcagctgg tgaatcaata cgtatctaaa
      361 aatgtcatct ccagcgagca tattgtcgag agagaggcgg agacgtcttt ttccaccagt
      421 cactacactt cgacagctca tcactccact actgtcaccc agactcccag tcacagctgg
      481 agcaacggac acactgaaag catcatttca gaaagccact ctgtcatcgt gatgtcatct
      541 gtagaaaaca gtaggcacag cagccctact gggggcccaa gaggacgtct taatggcttg
      601 ggaggccctc gcgagtgtaa cagcttcctc aggcatgcca gagaaacccc tgactcctac
      661 cgagattctc ctcatagtga aaggtatgta tcagcaatga ccaccccggc tcgtatgtca
      721 cctgtagatt tccacacgcc aagctccccc aaatcgcccc cttcggaaat gtctccaccc
      781 gtgtccagca cgacggtgtc catgccctcc atggcagtca gtcccttcgt ggaagaagag
      841 agacccctgc ttcttgtgac accgccatgg ctgcgggaga gggatgtcca gcacgttcag
      901 cagttcagct ccttccactg caaccccgcg cacgagagcc gcagcccacc ccctagcccc
      961 ttgaggatag tggaggatga agagtatgaa acgacccagg agtatgaact gactcaagag
     1021 tcggttaaga aactcaccaa cagccggcgg gctaaaagaa ccaagcccaa tggtcatatt
     1081 gcccacagat tggaaatgga cagcaacaca agcgctgaga gcagtaactc agagagtgaa
     1141 acagaggatg aaagagtagg agaagataca cctttcctgg gcatacagaa cccactggca
     1201 gccaatgttg aggcagcccc tgccttccac ctggctgaca gcaggactaa cccagcaggc
     1261 cgcttctctc cgcaggaaga attgcaggcc aggctgtccg gtgtaatcgc taaccaagac
     1321 cctattgctg tataaaaccg aaataaaccc atagattcac ctgtaaaact ttattttata
     1381 taataaagta ttccacctta aattaaacaa tttattttat tttagcagtc ctgcaaatag
     1441 aaaacaggaa aaaaaatctt ttataaatta aatatatgta tgtacaaatg tgttatgtgc
     1501 catatgtagc aattttttac agtatttcca aacgagaaag atatcaatgg tgcctttatg
     1561 ttatgttatg tcgagagcaa gttttgtact gttcctgtga ttgctttctc acagtatttc
     1621 agcaaaccct ctcccacccc cgcaaattcc gtttttgctg gcttcttgtg cattgcatta
     1681 tgacgttgac tcgatgtatg atttacagga tttgcaactg tccctctgtc tgcttcaagt
     1741 agtactcaat cagtacgtct tgtaatggca catccatcca aatactcccc ttctgtatga
     1801 aatattcttt tgctttcagt atatgaaatg agttgtgtct acgactctgc cagccaaagg
     1861 tctgcttcac tgagctctga gataatagta gatccagcag cgttttacgg ttaattacag
     1921 caggaaactg cattaagtca tgttaaatat taggaagaaa gtaatattgt gatttttttt
     1981 ttttttcaaa aacggtatga ttcatcagaa gacagcttgc ttgacaaaag gagctaccat
     2041 ttactttatt ttgattggtt ttttttctcg gccaaaaaaa aaacccaagt tttcgggata
     2101 gcaaagaaaa ggggttctgg ctaccgatca gggtaaaacc caacccctaa gtcgaggact
     2161 cggtttcact ttctctctct gggggaatga tacagcggct catctagctg aagagcaaac
     2221 catggctgaa aaaggtgcaa tcgttcctga cttgtgtttt ttcactgatt ttggagctag
     2281 tgaccggttg tgtcttcttg gctcaaggac agatatatta tggcacaaat accccagctt
     2341 caacagcaca ctcagcaatt tgtctgaaat accttctaga gtgaaatgtg cctgctgtat
     2401 atactggtga cgtcatcgta gggaaatcct tcttagactg tctagaggag tgaatatata
     2461 gaagacacgg gggagagcag ctgtgtgacc tggttagtaa tttttaagtt ttttgaccat
     2521 tcctttgtcc tcattatgtt cctctcattt ttcaatgttg ccttgattca gtcataacta
     2581 tgcatgaaca tttttgtcag gaatggccag tgtgcacgtg atttgtgatt agtaagaacc
     2641 tcctacgagt gatgactcat caggaaatgg caatagtctt ggaaagattg cacctttcct
     2701 tgcagaaatg actcccacct gtgtgctaac ctctctgttt acagctgtat cacccgtttt
     2761 ccccctttct tacttttttg ctttactgtc acaaaaacag gattaagatg ggtctatact
     2821 ttgcacgttc actcgggatt gccaatccaa ggaaagccta taggtagaaa catttgaaat
     2881 aactgctaat ccaggaaaat aagagaatta aaaaaaaaaa aatcacagcc ccatttctgt
     2941 cagattgggc tggagcttta cttaggttcc aagtggcctc ctaggagcca tggaacaaaa
     3001 tggggaacag gttagcaggg ggttcaaaat accagacatg aagtcaagga gagtgactct
     3061 tcttgtttgc aggtgaactg aatctatttc ttcaccaaat ctctatgtta aaattaaagg
     3121 gaagaagtga catgcaagga gatcttaaaa gaaaaatgca ggctgagcat gagtcatgtc
     3181 attaagctcc taagtgtttc tacaatccac agagacacct gtctacaggt ccttgaagtt
     3241 actcttagta tttggtatcc caagcgtcct tcatggttcc atgccacttt ctccgtgctc
     3301 agcggtatct tcatgtgctt gtccacctct cctaaggagg cccctgacaa ctctccaggt
     3361 tgcactgatt tcccaattct gtagaatcag ttaagctcat ggcaggggag agaaagcagt
     3421 caagcagtga agagattctc taaattactc taatattgca tttgaagacc ttgactcatt
     3481 cttagtctat ttcaattttt aagaagtccc actgtaatta aaactctaaa atttctgttt
     3541 caaactcttc aggcatttgg agtcccattc tggagaattt ccggaataaa taaaatcttc
     3601 tgttgagagc aatgaacaac attttcctca gtatgaaaaa tcactgtaaa ttttcaggtt
     3661 gcaaaaacag atgaaaattg agaggaaatt ttctttccaa ctggttctgg tcactcaccg
     3721 aggtggcgta tctgttggga caggctctct gtccatagaa tgagaggttc ccttgatagg
     3781 aaaggtcagc tgactcctcg gggctacctg ctgtggcccc cggatttggg ttcacagagg
     3841 catctccagg atgtttaaat gccaccatcc ctgtttataa actcaggagt gcagtggcaa
     3901 tccaaaggag tgtgaaccta cgttacccgc atacgggaaa cttttgtggg tcttcaggta
     3961 gcagaaattg cccagaagtt tgacggcgac gttgtttcct gggtctgaaa tcatatcccg
     4021 ctgagaaatg tggagtggag catagtatat gaaaaactcc tttttctcac tccagattcc
     4081 tttactaccc tactctcctt ccttgcctgg taggactttt gttcttgaga gtacctagac
     4141 agtctcgtgc tttctacaaa atggcactct gcctgggtat ttatgaatgt gtcccaaaga
     4201 gcaacatgcc gtatcttcct tatttaagtg cgactgtctt gatatagtta gagtttatcc
     4261 agggtcattt gctcagtaac tttttttttt ggcccggggt tgaaaggtgc atggctcaca
     4321 ttggtgaaaa taaggaagac ctagttttat cttttagttc tggctgcttc ccaccagcca
     4381 caaagattt
//
LOCUS       XM_032618355            1665 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuregulin 1 (NRG1), transcript variant
            X12, mRNA.
ACCESSION   XM_032618355
VERSION     XM_032618355.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1665
                     /gene="NRG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746724"
     CDS             486..1208
                     /gene="NRG1"
                     /codon_start=1
                     /product="pro-neuregulin-1, membrane-bound isoform isoform
                     X12"
                     /protein_id="XP_032474246.1"
                     /db_xref="GeneID:116746724"
                     /translation="MSERKEGRGKGKGKKDRGSGKKPAPAAGGPSPALPPRLKEMKSQ
                     ESAAGSRLVLRCETSSEYSSLKFRWFKNGNELNRKNKPQNIKIQKRPGKSELRINKAS
                     LADSGEYMCKVISKLGNDSASANITIVDANEIITGMPASTETAYVSSESPIRISVSTE
                     GANTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD
                     RCQNYVMASFYSTSTPFLSLPE"
     misc_feature    591..869
                     /gene="NRG1"
                     /note="Immunoglobulin (Ig)-like domain found in neuregulin
                     (NRG)-1; Region: Ig_Pro_neuregulin-1; cd05895"
                     /db_xref="CDD:409476"
     misc_feature    591..611
                     /gene="NRG1"
                     /note="putative Ig strand A [structural motif]; Region:
                     putative Ig strand A"
                     /db_xref="CDD:409476"
     misc_feature    633..659
                     /gene="NRG1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409476"
     misc_feature    678..695
                     /gene="NRG1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409476"
     misc_feature    735..752
                     /gene="NRG1"
                     /note="putative Ig strand D [structural motif]; Region:
                     putative Ig strand D"
                     /db_xref="CDD:409476"
     misc_feature    765..779
                     /gene="NRG1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409476"
     misc_feature    807..824
                     /gene="NRG1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409476"
     misc_feature    843..869
                     /gene="NRG1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409476"
     misc_feature    1050..1142
                     /gene="NRG1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
ORIGIN      
        1 attgaaaaag agccggcgag gagttccccc caacttgtcg aaactccggg ctcgcgcgga
       61 gggcaggagc ggggtgactg cggctgccgg gcgacgcaag cgctggccgg acggttatcg
      121 cctctccctc ctcgggctgc gagcgcgccg gacagaggcc gcgacaggag ccgacagcgg
      181 cgggaaccga gcacttccct gcgcgacagg agccgccccg agagcgagcg cgaccgccgg
      241 acgcagcgac cgccagtccc aggtggcccg gaccgcacgc cgcgtccccg cgctccccgc
      301 cggcgacagg agacgccccc cgcgcagcgc gcgagccgca gcccggccgg tggttctacc
      361 cgcctccgcc ccccgccctc gagggacaaa cttttcccaa agccgatccc agcccttgga
      421 ccaaacttgt cgcgcgtcgc ctccgccggg cgccgtccgc gcagagcgtg cacttctcgg
      481 gcgagatgtc ggagcgcaaa gaaggcagag gcaaggggaa gggcaagaag gaccgaggct
      541 ccgggaagaa gcccgcgccc gcggcgggcg gcccgagccc agccttgcct ccccgattga
      601 aagagatgaa aagtcaggag tctgcagcag gttcaagact cgtgcttcgg tgcgagacca
      661 gttctgaata ctcctctctc aaattcagat ggttcaagaa tgggaatgaa ttaaaccgaa
      721 agaacaaacc acaaaacatc aagatacaaa aaaggccagg gaagtcagaa cttcgcatta
      781 acaaagcgtc actggctgat tctggagaat acatgtgcaa agtgatcagc aaattaggaa
      841 acgacagtgc ttctgccaat atcaccattg tggatgcaaa tgagatcatc actggcatgc
      901 cagcctcaac tgagacagcg tatgtgtctt cagagtctcc cattagaata tcagtgtcaa
      961 cagaaggagc aaatacttct tcatccacat ctacatctac cactgggaca agccatcttg
     1021 tcaagtgtgc agagaaggag aaaactttct gtgtgaatgg aggcgagtgc ttcatggtga
     1081 aagacctttc aaacccctca agatacttgt gcaagtgccc aaatgagttt actggtgatc
     1141 gctgccaaaa ctacgtaatg gccagcttct acagtacgtc cactcccttt ctgtctctgc
     1201 ctgaatagga gcatgcccag tcggtgctgc tttcttgttg ctgcatcttc cctcagattt
     1261 cacctagagc tagatgtgtt ttaccaggtc taacattgac tgcctctgcc tgtcgcatga
     1321 gaacattaac aaaagcaatt gtattacttc ctctgttcat gactagttgg ctccgagatg
     1381 ctcataggtg tgtgaggctc cgatgtttct gaaattgatc ttgaacaatg tgatacaaaa
     1441 tgatagtctg tatcgcacag tgcgatgatg ataataaagg catttaaaag tctcactttt
     1501 attgataaaa taaaatcatt ccactggaca gtccatcttc tttataaaat gaccccatcc
     1561 tgaaaaggat gttcgctaag ttgtaaccag tacacacttg aaatgatggt aagttcattt
     1621 cggttcagaa tgtgttactt ctaacaaata aacagaataa aaaga
//
LOCUS       XM_032618356             753 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transcription factor Spi-C-like
            (LOC116746726), mRNA.
ACCESSION   XM_032618356
VERSION     XM_032618356.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-210               VOSU01000013.1     25292452-25292661
            211-211             "N"                1-1
            212-753             VOSU01000013.1     25292662-25293203
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..753
                     /gene="LOC116746726"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 12% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746726"
     CDS             1..753
                     /gene="LOC116746726"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: transcription factor
                     Spi-C-like"
                     /protein_id="XP_032474247.1"
                     /db_xref="GeneID:116746726"
                     /translation="MACVEQDKLGQAFEDAFEVPRQHSTGDLQYSSDYKHYLAFINHC
                     SHVRGNSSSCGVLPTEELVYNWRTVIXFCIIIYLCFEGNIHQSLQNIPENQLVQPTRL
                     QQKGGKGRKELRLFQYLHESLCNPEMASRIQWIDQTKDIFRFVSKNKEKLAQLWGRRK
                     GNRKTMTYQKTARALRNNGRTGEVIKIRRKLTYQFSEAILQRLSPSYFLEEEIFYSQY
                     LQPDRGYLSLNNWNASYNYTYTSYHDLSHPDC"
     misc_feature    340..585
                     /gene="LOC116746726"
                     /note="Ets-domain; Region: Ets; pfam00178"
                     /db_xref="CDD:459700"
ORIGIN      
        1 atggcttgtg ttgaacaaga caagctgggt caagcatttg aagatgcttt tgaagtaccg
       61 aggcaacatt caactggtga tcttcagtac tcctcagatt acaaacatta cctggctttc
      121 attaaccact gttctcacgt cagaggaaat tccagcagct gtggtgtgct gcccacagag
      181 gaactggttt acaattggag aacagtaata ntattttgta taataatata cctctgtttt
      241 gaaggaaata ttcatcagtc tctgcagaac atccctgaaa accagctggt gcaaccaact
      301 cgtctccagc aaaagggagg aaaaggcagg aaggagctcc gactgtttca ataccttcat
      361 gaatccctgt gtaatccgga gatggcatct cgtattcagt ggatagatca aaccaaagac
      421 atctttcggt ttgtatcaaa aaacaaagaa aaacttgccc aactttgggg gagaagaaaa
      481 ggcaaccgga agaccatgac ttaccagaaa acggccagag cactgaggaa taatggaaga
      541 actggggaag tcatcaaaat tcggagaaag ttaacttacc agttcagtga ggccattctc
      601 caaagactgt ctccatctta tttcttggaa gaagagatct tctactcaca gtatcttcaa
      661 cctgatcgag gatatctcag tttaaataac tggaatgcaa gttataatta tacatacacc
      721 agttaccatg atctaagtca ccctgattgc taa
//
LOCUS       XM_032618357            9962 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tankyrase (TNKS), transcript variant X1,
            mRNA.
ACCESSION   XM_032618357
VERSION     XM_032618357.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9962
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9962
                     /gene="TNKS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 30 long SRA reads, 20
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746727"
     CDS             29..4012
                     /gene="TNKS"
                     /codon_start=1
                     /product="poly [ADP-ribose] polymerase tankyrase-1"
                     /protein_id="XP_032474248.1"
                     /db_xref="GeneID:116746727"
                     /translation="MAASRRSQHHHHHHQQQLQPAPGASAPPPPPPPPLSPGLAPGTT
                     PASPTVGGLAPFASPRHGLALPEGDGSRDPPDRPRSPDPVDSTSCCSTTSTVCTVAAA
                     PVVPALPASSAVGVAPSPAGGGSNNSPSSSSSPTSSLSSSPSSPGSSLSESPEAAGVS
                     TTATLGPGAAGPGPGVPAVSGALRELLEACRNGDVSRVKRLVDAANVNAKDMAGRKSS
                     PLHFAAGFGRKDVVEHLLQMGANVHARDDGGLIPLHNACSFGHAEVVSLLLCQGADPN
                     ARDNWNYTPLHEAAIKGKIDVCIVLLQHGADPNIRNTDGKSALDLADPSAKAVLTGEY
                     KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG
                     ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV
                     CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKT
                     LALEIINFKQPQSHETALHCAVASLHPKRKQVTELLLRKGANVNEKNKDFMTPLHVAA
                     ERAHNDVMEVLHKHGAKMNALDTLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG
                     FTAAQMGNEAVQQILSESTPIRTSDVDYRLLEASKAGDLETVKQLCSPQNVNCRDLEG
                     RHSTPLHFAAGYNRVSVVEYLLHHGADVHAKDKGGLVPLHNACSYGHYEVAELLVRHG
                     ASVNVADLWKFTPLHEAAAKGKYEICKLLLKHGADPTKKNRDGNTPLDLVKEGDTDIQ
                     DLLRGDAALLDAAKKGCLARVQKLCTPENINCRDTQGRNSTPLHLAAGYNNLEVAEYL
                     LEHGADVNAQDKGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQKG
                     RTQLCALLLAHGADPTMKNQEGQTPLDLATADDIRALLIDAMPPEALPTCFKPQATVV
                     SASLISPASTPSCLSAASSIDNLAGPLAELAVGGASNAGDGAAGTERKEGEVAGLDMN
                     ISQFLKSLGLEHLRDIFETEQITLDVLADMGHEELKEIGINAYGHRHKLIKGVERLLG
                     GQQGTNPYLTFHCVNQGTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYN
                     VIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYI
                     GGMFGAGIYFAENSSKSNQYVYGIGGGTGCPAHKDRSCYICHRQMLFCRVTLGKSFLQ
                     FSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPSQTT
                     AAAEQKT"
     misc_feature    572..1540
                     /gene="TNKS"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    680..766
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(689..694,701..709,713..718,728..730,737..739,
                     764..766,770..772,776..778,788..793,800..808,812..817,
                     827..829,836..838,863..865,869..871,875..877,887..892,
                     899..907,911..916,926..928,935..937,962..964)
                     /gene="TNKS"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    770..865
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    869..964
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    890..1912
                     /gene="TNKS"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    1139..1225
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1148..1153,1160..1168,1172..1177,1187..1189,
                     1196..1198,1223..1225,1229..1231,1235..1237,1247..1252,
                     1259..1267,1271..1276,1286..1288,1295..1297,1322..1324,
                     1328..1330,1334..1336,1346..1351,1358..1366,1370..1375,
                     1385..1387,1394..1396,1421..1423)
                     /gene="TNKS"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1229..1324
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1328..1423
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1595..1597,1607..1612,1619..1627,1631..1633,
                     1643..1645,1655..1657,1664..1666,1691..1693,1697..1699,
                     1703..1705,1715..1720,1727..1735,1739..1744,1754..1756,
                     1763..1765,1790..1792,1796..1798,1802..1804,1814..1819,
                     1826..1834,1838..1843,1853..1855,1862..1864)
                     /gene="TNKS"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1595..1693
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1697..1792
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1796..1885
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1922..2887
                     /gene="TNKS"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    2084..2170
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2093..2098,2105..2113,2117..2122,2132..2134,
                     2141..2143,2168..2170,2174..2176,2180..2182,2192..2197,
                     2204..2212,2216..2221,2231..2233,2240..2242,2267..2269,
                     2273..2275,2279..2281,2291..2296,2303..2311,2315..2320,
                     2330..2332,2339..2341,2366..2368)
                     /gene="TNKS"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2174..2269
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2273..2368
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2444..2599
                     /gene="TNKS"
                     /note="Ankyrin repeats (many copies); Region: Ank_4;
                     pfam13637"
                     /db_xref="CDD:372654"
     misc_feature    2543..2629
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2552..2557,2564..2572,2576..2581,2591..2593,
                     2600..2602,2627..2629,2633..2635,2639..2641,2651..2656,
                     2663..2671,2675..2680,2690..2692,2699..2701,2726..2728,
                     2732..2734,2738..2740,2750..2755,2762..2770,2774..2779,
                     2789..2791,2798..2800,2825..2827)
                     /gene="TNKS"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2633..2728
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2732..2827
                     /gene="TNKS"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    3098..3295
                     /gene="TNKS"
                     /note="SAM domain of tankyrase1,2 subfamily; Region:
                     SAM_tankyrase1,2; cd09524"
                     /db_xref="CDD:188923"
     misc_feature    3299..3967
                     /gene="TNKS"
                     /note="Tankyrases interact with the telomere reverse
                     transcriptase complex (TERT). Tankyrase 1
                     poly-ADP-ribosylates Telomere Repeat Binding Factor 1
                     (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or
                     TRF1. The tankyrases also contain multiple ankyrin...;
                     Region: tankyrase_like; cd01438"
                     /db_xref="CDD:238718"
ORIGIN      
        1 gcagtgacag tgctggggga gtccgaagat ggcggcgtcg cgtcgctctc agcatcatca
       61 ccaccatcat caacaacagc tccagcccgc cccaggggct tcggcgccgc cgccgccacc
      121 tcccccccca ctcagccccg gcctggcccc ggggaccacg ccagcctccc ctacggtggg
      181 tggcctggcc cccttcgcct ccccgcggca cggcctagcg ctgccggagg gggatggcag
      241 tcgggatccg cccgacaggc cccgatcccc ggacccggtt gacagtacca gctgttgcag
      301 taccacgagc acagtctgta ccgtcgccgc cgctcccgtg gtcccggctc ttcctgcctc
      361 atctgccgtc ggggtcgctc ccagcccagc cggcggtggc agtaacaatt caccgtcgtc
      421 ctcttcttcc ccgacttctt ccttatcttc ctctccatcc tcccccggat cgagcttgtc
      481 ggagagcccc gaggcggccg gagttagcac cacagcaaca ttgggacctg gggcagcagg
      541 acctgggcca ggggtcccag cagtgagcgg ggccctccgg gaactgttgg aggcctgtcg
      601 caatggggac gtgtcccggg taaagaggct ggtggacgcg gcaaacgtga atgctaagga
      661 catggccggc cggaagtctt ctcccctgca cttcgctgca ggttttggaa ggaaggatgt
      721 cgtagaacac ttactgcaga tgggtgctaa tgtccatgct cgtgatgatg gcggtctcat
      781 cccgcttcat aatgcctgtt cttttggcca tgctgaggtt gtgagtctgt tactgtgcca
      841 aggagctgat ccaaatgcca gggataactg gaactatacc cctctgcatg aagctgctat
      901 taaaggaaag atcgatgtat gtattgtgct gctgcagcac ggagctgatc caaacattcg
      961 gaacactgat gggaaatcag ccctggacct ggcggatcct tcagcaaaag ctgtccttac
     1021 aggtgaatac aagaaagacg aactcctaga agctgctagg agtggtaatg aagaaaaact
     1081 aatggcttta ctgactcctc taaatgtgaa ttgccatgca agtgatgggc gaaagtcaac
     1141 tcctttacat ctagcagcgg gctacaaccg agttcggatc gttcagcttc ttctccagca
     1201 tggtgctgat gtgcatgcaa aagacaaagg tggacttgtt cctctccata atgcatgttc
     1261 atatggacat tacgaagtca cagaactgct actaaagcat ggagcttgtg ttaatgctat
     1321 ggatctctgg cagtttaccc cactccatga ggctgcttcc aagaatcgtg tagaggtctg
     1381 ctctttgtta cttagtcatg gtgccgatcc cactttagtc aactgccatg gcaaaagtgc
     1441 cgtggatatg gctccaacgc ctgagctccg ggaaagattg acttatgaat ttaaaggtca
     1501 ttctttacta caagcagcca gagaagcaga cctagcgaaa gttaaaaaaa cacttgcttt
     1561 ggaaatcatt aatttcaaac aaccacagtc tcatgaaact gcactgcact gtgctgtggc
     1621 ctccctgcat cccaaacgca aacaagtgac agaattgtta cttagaaaag gagcaaatgt
     1681 taatgaaaaa aataaagatt tcatgacgcc cctgcacgtt gcagcagaaa gggcccacaa
     1741 tgatgtcatg gaagttctac ataaacatgg agcaaagatg aatgcactgg acacccttgg
     1801 tcagactgct ttgcatagag ctgctcttgc cggtcacctg cagacctgcc gcctgctact
     1861 gagttacggc tctgatccct ccatcatctc tttacaaggc tttacagcag cacagatggg
     1921 gaacgaagca gtgcagcaga ttctgagtga aagtacacct atacgcactt ctgatgttga
     1981 ctatcggctc ttagaagcat ctaaagccgg agacttggaa actgtgaagc aactttgcag
     2041 ccctcagaat gtgaattgca gagatttaga gggccggcat tctacacccc tacactttgc
     2101 ggcaggctat aaccgtgtgt ctgtcgtgga gtacctccta caccatggtg ccgatgtcca
     2161 tgccaaagac aaaggtggct tggtgcctct tcataatgct tgttcatatg gacactatga
     2221 agtagctgag ctcttggtaa ggcatggggc ttctgtcaat gtggcagact tatggaaatt
     2281 tacccctcta catgaagcag cagctaaagg aaaatatgaa atctgcaagc tccttttaaa
     2341 acatggagca gatccgacta aaaagaacag agatggaaat acacctttag atttggtaaa
     2401 agaaggagac acagatattc aggacttact gagaggagat gctgctttgt tggatgctgc
     2461 caagaagggc tgcctggcaa gagtgcagaa gctctgtacc ccagagaata tcaactgccg
     2521 agacacccaa ggcagaaact caacccctct gcacttggca gcaggctaca ataacctgga
     2581 agtagctgaa tatcttctag agcatggagc agatgttaat gcccaagaca aaggtggttt
     2641 aattcctctt cacaatgcag catcctatgg gcatgtggac atcgcagcgt tactgataaa
     2701 atacaacaca tgtgtaaatg caacagacaa gtgggcattt actcctcttc acgaagcagc
     2761 ccaaaaaggc aggacacagc tttgtgccct actcctggca catggtgcag atccaactat
     2821 gaagaaccaa gaaggccaga cacctttaga tctagcaacg gctgacgata tcagagcttt
     2881 gctgatagac gccatgcccc cagaggcctt acctacctgt tttaaacctc aggctactgt
     2941 agtgagtgcc tctctgatct caccagcatc caccccctcc tgcctgtctg ctgctagcag
     3001 catagacaac ctcgccggcc ccttagcaga attggcagta ggaggagcgt ctaatgccgg
     3061 ggatggcgca gcaggcacag aaaggaagga aggagaagtt gctggtcttg acatgaatat
     3121 tagccaattc ctgaaaagcc ttggtcttga acaccttcgg gacatctttg aaacagaaca
     3181 gattacacta gatgtgttgg ctgatatggg tcatgaagag ttgaaagaaa taggcatcaa
     3241 tgcatacgga caccgccata aattaatcaa gggagtagaa agactcttag gtggacaaca
     3301 aggcaccaat ccttatttga cttttcactg tgttaatcag ggaactattt tgctggatct
     3361 tgctccagaa gataaagaat atcagtcagt agaagaagag atgcaaagta caattcgcga
     3421 acacagagat ggtggtaatg ctggtggcat cttcaacaga tacaatgtca ttcgaattca
     3481 aaaagttgtc aacaagaagt tgagagagcg attctgtcac agacagaagg aggtgtctga
     3541 ggagaatcac aaccaccata acgagcgcat gttatttcac ggttctcctt tcattaatgc
     3601 cattattcat aaagggtttg atgagcgaca tgcatatata ggaggaatgt ttggtgccgg
     3661 gatttatttt gctgaaaact cttctaaaag caaccagtac gtttacggaa ttgggggagg
     3721 aacaggctgc cccgcgcaca aagaccggtc gtgttacata tgtcacagac aaatgctttt
     3781 ctgtagagtg acccttggca agtcctttct gcagttcagc accatgaaaa tggctcacgc
     3841 ccccccaggc catcactccg tcattgggag gccgagtgtg aatgggctgg cctatgctga
     3901 atatgtcatc tacagaggag agcaggcata cccagagtat ctcatcacct accagatcat
     3961 gaagccggaa gctccttcac agaccacggc agctgcagag cagaagacct agtgaatgcc
     4021 cactggtaaa ggccagattg gatttaaacc tgggactgga tgacagtgga ttgttttcaa
     4081 caaaatcaat attctataaa tccgtgacag cctagaaata agctgtttgt cttttataaa
     4141 gcattgcgat agtgatgaat atagtatgag taactgatac atactcaact gctactgttc
     4201 cctttgagga aatgtttaca ggggcggcct tttaacatat ctcaggctca ttttcattgt
     4261 agttatccat tgctaagaca ggattgcttc aatctagact tggaaaaaaa gaaaacataa
     4321 ccagtacttt cccaaatgtt cacaattcac acactacatt tgctttgcta tatatggcgc
     4381 gtgtatatag taaatataca catatgacag gttcattttt cgttttttct gaacactcat
     4441 cgttcacttt tttttgctat cgttgttgtt gttactttga aaatgagccg agccttcttg
     4501 aggatatttt gcacaaagtc acactgacta aaatcactag tgatgtaacc caagcttctg
     4561 gctgagcaag gcttagtttc cacttttttt tttttcccac tgatttattt tgtatctgta
     4621 cttcttatca acgtaaactg agatggaaag gaaaaacacc acgtttcagt ttccttttat
     4681 tgattggcca gtcttacaag ggaaaggcac aaacatcaac ctgatttagg agctcccaag
     4741 ttcagagcag tcgaagccaa tgagagccac tcgcactttc caactcaggc ctgcctccga
     4801 cgtgttcagg acggtgctgg agggccagga agagcccagc cagcgagagg cttgagtgat
     4861 gctgttgtga cgttcagagg ggagaccgcc agggaggcct gtgaatccag gagaagcagc
     4921 attacgacac atgaggggcc tgtggtgcga taataggacc gcagaaaagg acaacgaggg
     4981 ctcctcacag aaaacacgac ttctctccac ttaacccgcg ccaccagaat tgtcgccccc
     5041 aaaattagct gccttatttc caaattcagt ggaattattg tactgcatta gagtctcaaa
     5101 acaattacct tattgtttct ctagtttaga aagctgggat tcaaatcctg tgtagtcact
     5161 agataggcac agatgcaaga acttttctgt ttactccaga tttggggttt attttgagtg
     5221 aggtgcttcc gatagtttgt gtaggtccct gcactaaatt tttgaaccat tttctcaaac
     5281 ttcttagtag acaaggagaa caaaaatgga aaccaaagct ctttcagtta ctttttaaat
     5341 gaaagtggag aagtaaccat actgttcctt cctgaagtcg ctactttgtt ttgctttttc
     5401 tctcaacatt tgtcaagcgc acattgttac ttgtaaaaaa ttatccatta cagttctcac
     5461 gcttgccctt ttcaccttaa ctgaatattg aattaagtgc attaacttac ttactttgac
     5521 atgctatgcg tctactcagc ttcgaagcaa aagtaacata aatgtgatgg aaaaacagtg
     5581 tgacgcaaac ttgccatttc aacttaaagt cctgaaaact aacttgcttg tttgttcttt
     5641 aatacaggct gattaagctg tgacctcatt taatctcctg aggaaaaata aaatggttac
     5701 atgcaaagat tctagaatag gctcttaaaa tatacatttt gctttccttt tggcttgagt
     5761 ccaatgctag aactagacat cgggaactag ttttgagttt tatagctgaa tcttgcatgg
     5821 gtcctcaaaa ttaaatcaag aattagcctc agttgttgct tctattgaag ttttagtgac
     5881 ccaagctggg tgtttgtgtc ttggctactt gtttaatagc actagaattc cacatgaagc
     5941 tctcaagttt gatatccatt gagggctttt ttcctccctt ccttcttttt tgctgtgtgt
     6001 aacagtgggt tgaaggaatt ggcatctgtg tagttttcag tagctgtgaa agtgtatatt
     6061 acttgcctcc ccaattagat atagtttaaa atggtaaaca cagctgtgat ttttagttaa
     6121 ataaaagggt taatatggta tagatcccaa aagctttata gcttcattaa aaagataagc
     6181 cactacccaa ctgtggttat atgttatttc catcatacta actagattaa cggatgtgcc
     6241 agttttaaac ttcagcctta cacttgagaa ggtaaactgt ggttcagtat ttaaaccgcc
     6301 aatgttacgt atctgatgtt ctgtgtgcca agtaaaggta ctgtgtgtaa ggaggacatt
     6361 tgctgtgctt cttgtctcgt aatgattcaa gtatatagta gttcttgaaa gaatgtgtac
     6421 atattattca tctgctgaag agaatgagtt cattgatgtc tcacaggagc caaatacatt
     6481 ttttcaaaac ttgaaaacca aaggtcatca tgagtgcatt caagttagca aaagttgatt
     6541 gcgtttggaa tttccaccca tagcagtgtg aaaaaccctt tggaactcaa aagcatggct
     6601 ttaagttagg ctaaaatgca cttaatttct tgcgtacaca ctgtatagaa acactagcaa
     6661 gtgaggactt ccagtgtggc ctcccctgag tggcccctct gtttcccaaa ccatatagaa
     6721 gagagaatcc agacgcctcc accttttcca ccacaggtct gacatcaaag ggcttctaga
     6781 cctgatggcc cagtttgcta gctattggca tcagttaagt gctctggact ggacactttc
     6841 tccttgtact tggcctcctt cccttttccc cagattgcta gtctggaatt ataattagct
     6901 ccagcaatta cctttgaccc ctctcatttt cctcctttct ccatcttgag tcttgcatat
     6961 ggcgaccgta cctctgtatc cacttcgcaa ctagaactgg gtattaagcc tcatgtgctc
     7021 tgctcggaag attctgccac tttgtcaaca aatgacagca tggaacccag agttttaatt
     7081 ctatgcaaaa taatagcagt acaaccagga ttcttcctta ccttttcctt cttggaattt
     7141 ggaatctcta gcttttcagt aacataagta gaataaacag tattaggatg tttttgtgaa
     7201 atggcaccct tgtgctcgtt tgaacttgat gttagtggct acagtaattt ccctttgctc
     7261 tcaaaatagc gaagtgcatt gatatatgca gagaaatgcc tgaatgtggc aaataaagta
     7321 atatagatga atattctatt attatagcct ttatacaaaa aaataaactt ttggtgtatg
     7381 ctggaagaca gcattagaat acaatgagtt gtctatgttt ttctctattt cagtaagtct
     7441 cccacctgca caaaggttat tggccactgc ttaccctccc tttttttttt tttaacatct
     7501 ttattggagt ataattgctt tacgatgttg tattagtttc tgctttataa caaagtgaat
     7561 cagctataca tatacataca tccccatatc ccctccctct tgcgtctccc tcccaccctc
     7621 tctatcccac ccctctaggt ggacacaaag cactgagctg atctccctgt gctatgcggc
     7681 tgcttcccac tagctatctg ttttacattt ggtagtgtat atgtgtccat gctactctct
     7741 cacttcatcc cagcttaccc tcccttttaa aacgtgtgca ccttctggat ttctgtaatt
     7801 gctttcaaac agagatggta tgtattttta agcacctttc ccccagtgtg tccagatccc
     7861 atttgtatga taatctgtga taaacagcct tttttctgtg ttttctgttg ggcagttatc
     7921 ttgcatagag ctatagattt tagtcattca ggcaacactc aaaactgaca taaagatagg
     7981 gtttcatgtg tcagaaattt acttaaagac tgaagttaaa cttctttgtt gtcaaatcag
     8041 tgacagagaa atgaaaagac agtgattgtg aagataatat ttgcactttg gctggacacg
     8101 tctagcacaa gaaaaggaaa tgcatttaaa aaaaaaaaaa aaaaacaccc taaaaagtga
     8161 ggcttcttca gatactttgt gagttctgaa attaatagac actctttctt cttaagaaag
     8221 ccttaactat ggcagaaact ttttaacctt ttatatccta ataaatacag agttgtaatt
     8281 ccatttctca gtgtgtgaaa ggtgtcaccg agttgggtgt atctccatgt atctcacacc
     8341 tggtaggcgt acttaatgag agtctgtttc ataagtaagc ctcctttacg tgcaaaggag
     8401 ctgagagaat tgatccaccc caatttctct acatctgaac ttcctcagct accaaatctt
     8461 ctggttcaga gaaatgctag aaagattttg aaacccatta agttttgtgc acgtggggat
     8521 tggcaacaac tcataaagtg ataccatgta gaattggggt gttgcacaag ctgattttta
     8581 atcattttaa aatataaacc aaaaaaaaaa aaatataaac cacggtgata agtgaaaagc
     8641 agtaggaaac taaagatttt atatactaag accaaacgtg ctcacgatgt gaccggtttt
     8701 aaacgtctgc cagagggttg tgcctccttt gaaataacgt tcacacagta gagatgattg
     8761 cattctgact cttcgttctt tcgtgttttc ttttgcgact tacactttca cgtctccacg
     8821 cgcagcccac cacccatctt ttcaaacaga tttctcatgc tctagaacgc agagtgttcg
     8881 gttatttttc atctgtcggc ccttttttgc aggcagccct tgaagcccct tgttgattcc
     8941 tagcatttgc agagaaatgt agttaaaccc tggtaggggg gtgtctctcc cacactccca
     9001 ggcccctccc aaggttcagg atgaaaaact agagtacaca accgtaaaaa ttagaaaaga
     9061 accaaaatct ttaaggctaa tagcctagac ctagaagatg accttgacta tataaccatt
     9121 gtattcatta cacagaatat ttaaactctt catgtgcata gaatacctgc ctctgctttc
     9181 actgtgtcaa gctcaccctg tctatgtggt agtagtattt gtctgatacc tacgaactaa
     9241 aaaggtactt ttatcaacaa ggtttctcaa acacattaca aaaccagctt tgaggaaatc
     9301 tagagtgttt cctggcaaca gcatttggag tagtaactgt attttctcat tgtgatcttg
     9361 gtctgtttac gtaaccaatg tagtgactct ttggttcatc attggtggtg ttttcatttg
     9421 tagtctctgt gtgacccacc agtggcaggg tgtcccaagc ccctttcctt tcctttttgc
     9481 atttgtcttt ttgtagaatt gccagataaa atacaagaca cccagttcaa tttgaatttc
     9541 aaataaacaa ataattgtgt ctcttaagta tggttcatgc attatttggc atatatttac
     9601 tgcaaaaaaa atattattta tctgaaattg aaacttaact gaacatccta ggggttttgg
     9661 ctttgctttg ttttgtttta ctgaatctgg caaccctatc gatttggttg tggaaaatcg
     9721 ctttcagcat gtaaattctt ctagatttca ccatctttca cgtggaatgg cacctttttt
     9781 cccctcatcc tctactttcc aaaagagggc atcaaggaat tcaacctgcc tgcatggtgg
     9841 gtttctattt aaggcatctt tatgattata tttaaccagt aactgtgctt tggctaaatg
     9901 tctaacttac agtacttgta attgtttaat attcaataaa agcattttta aagtttactg
     9961 ta
//
LOCUS       XR_004347856           10042 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tankyrase (TNKS), transcript variant X2,
            misc_RNA.
ACCESSION   XR_004347856
VERSION     XR_004347856.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10042
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10042
                     /gene="TNKS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746727"
     misc_RNA        1..10042
                     /gene="TNKS"
                     /product="tankyrase, transcript variant X2"
                     /db_xref="GeneID:116746727"
ORIGIN      
        1 tcccaatact tcccgcccac tctctgaccc cgcccaccgc tcccagcatc atttcctgtg
       61 cgctgggtgc taattggtcc agcagtcgga agtgagggcg ggcggtgggg ccgttgccgc
      121 agtgacagtg ctgggggagt ccgaagatgg cggcgtcgcg tcgctctcag catcatcacc
      181 accatcatca acaacagctc cagcccgccc caggggcttc ggcgccgccg ccgccacctc
      241 cccccccact cagccccggc ctggccccgg ggaccacgcc agcctcccct acggtgggtg
      301 gcctggcccc cttcgcctcc ccgcggcacg gcctagcgct gccggagggg gatggcagtc
      361 gggatccgcc cgacaggccc cgatccccgg acccggttga cagtaccagc tgttgcagta
      421 ccacgagcac agtctgtacc gtcgccgccg ctcccgtggt cccggctctt cctgcctcat
      481 ctgccgtcgg ggtcgctccc agcccagccg gcggtggcag taacaattca ccgtcgtcct
      541 cttcttcccc gacttcttcc ttatcttcct ctccatcctc ccccggatcg agcttgtcgg
      601 agagccccga ggcggccgga gttagcacca cagcaacatt gggacctggg gcagcaggac
      661 ctgggccagg ggtcccagca gtgagcgggg ccctccggga actgttggag gcctgtcgca
      721 atggggacgt gtcccgggta aagaggctgg tggacgcggc aaacgtgaat gctaaggaca
      781 tggccggccg gaagtcttct cccctgcact tcgctgcagg ttttggaagg aaggatgtcg
      841 tagaacactt actgcagatg ggtgctaatg tccatgctcg tgatgatggc ggtctcatcc
      901 cgcttcataa tgcctgttct tttggccatg ctgaggttgt gagtctgtta ctgtgccaag
      961 gagctgatcc aaatgccagg gataactgga actatacccc tctgcatgaa gctgctatta
     1021 aaggaaagat cgatgtatgt attgtgctgc tgcagcacgg agctgatcca aacattcgga
     1081 acactgatgg gaaatcagcc ctggacctgg cggatccttc agcaaaagct gtccttacag
     1141 gtgaatacaa gaaagacgaa ctcctagaag ctgctaggag tggtaatgaa gaaaaactaa
     1201 tggctttact gactcctcta aatgtgaatt gccatgcaag tgatgggcga aagtcaactc
     1261 ctttacatct agcagcgggc tacaaccgag ttcggatcgt tcagcttctt ctccagcatg
     1321 gtgctgatgt gcatgcaaaa gacaaaggtg gacttgttcc tctccataat gcatgttcat
     1381 atggacatta cgaagtcaca gaactgctac taaagcatgg agcttgtgtt aatgctatgg
     1441 atctctggca gtttacccca ctccatgagg ctgcttccaa gaatcgtgta gaggtctgct
     1501 ctttgttact tagtcatggt gccgatccca ctttagtcaa ctgccatggc aaaagtgccg
     1561 tggatatggc tccaacgcct gagctccggg aaagattgac ttatgaattt aaaggtcatt
     1621 ctttactaca agcagccaga gaagcagacc tagcgaaagt taaaaaaaca cttgctttgg
     1681 aaatcattaa tttcaaacaa ccacagtctc atgaaactgc actgcactgt gctgtggcct
     1741 ccctgcatcc caaacgcaaa caagtgacag aattgttact tagaaaagga gcaaatgtta
     1801 atgaaaaaaa taaagatttc atgacgcccc tgcacgttgc agcagaaagg gcccacaatg
     1861 atgtcatgga agttctacat aaacatggag caaagatgaa tgcactggac acccttggtc
     1921 agactgcttt gcatagagct gctcttgccg gtcacctgca gacctgccgc ctgctactga
     1981 gttacggctc tgatccctcc atcatctctt tacaaggctt tacagcagca cagatgggga
     2041 acgaagcagt gcagcagatt ctgagtgaaa gtacacctat acgcacttct gatgttgact
     2101 atcggctctt agaagcatct aaagccggag acttggaaac tgtgaagcaa ctttgcagcc
     2161 ctcagaatgt gaattgcaga gatttagagg gccggcattc tacaccccta cactttgcgg
     2221 caggctataa ccgtgtgtct gtcgtggagt acctcctaca ccatggtgcc gatgtccatg
     2281 ccaaagacaa aggtggcttg gtgcctcttc ataatgcttg ttcatatgga cactatgaag
     2341 tagctgagct cttggtaagg catggggctt ctgtcaatgt ggcagactta tggaaattta
     2401 cccctctaca tgaagcagca gctaaaggaa aatatgaaat ctgcaagctc cttttaaaac
     2461 atggagcaga tccgactaaa aagaacagag atggaaatac acctttagat ttggtaaaag
     2521 aaggagacac agatattcag gacttactga gaggagatgc tgctttgttg gatgctgcca
     2581 agaagggctg cctggcaaga gtgcagaagc tctgtacccc agagaatatc aactgccgag
     2641 acacccaagg cagaaactca acccctctgc acttggcagc aggctacaat aacctggaag
     2701 tagctgaata tcttctagag catggagcag atgttaatgc ccaagacaaa ggtggtttaa
     2761 ttcctcttca caatgcagca tcctatgggc atgtggacat cgcagcgtta ctgataaaat
     2821 acaacacatg tgtaaatgca acagacaagt gggcatttac tcctcttcac gaagcagccc
     2881 aaaaaggcag gacacagctt tgtgccctac tcctggcaca tggtgcagat ccaactatga
     2941 agaaccaaga aggccagaca cctttagatc tagcaacggc tgacgatatc agagctttgc
     3001 tgatagacgc catgccccca gaggccttac ctacctgttt taaacctcag gctactgtag
     3061 tgagtgcctc tctgatctca ccagcatcca ccccctcctg cctgtctgct gctagcagca
     3121 tagacaacct cgccggcccc ttagcagaat tggcagtagg aggagcgtct aatgccgggg
     3181 atggcgcagc aggcacagaa aggaaggaag gagaagttgc tggtcttgac atgaatatta
     3241 gccaattcct gaaaagcctt ggtcttgaac accttcggga catctttgaa acagaacaga
     3301 ttacactaga tgtgttggct gatatgggtc atgaagagtt gaaagaaata ggcatcaatg
     3361 catacggaca ccgccataaa ttaatcaagg gagtagaaag actcttaggt ggacaacaag
     3421 ggaactattt tgctggatct tgctccagaa gataaagaat atcagtcagt agaagaagag
     3481 atgcaaagta caattcgcga acacagagat ggtggtaatg ctggtggcat cttcaacaga
     3541 tacaatgtca ttcgaattca aaaagttgtc aacaagaagt tgagagagcg attctgtcac
     3601 agacagaagg aggtgtctga ggagaatcac aaccaccata acgagcgcat gttatttcac
     3661 ggttctcctt tcattaatgc cattattcat aaagggtttg atgagcgaca tgcatatata
     3721 ggaggaatgt ttggtgccgg gatttatttt gctgaaaact cttctaaaag caaccagtac
     3781 gtttacggaa ttgggggagg aacaggctgc cccgcgcaca aagaccggtc gtgttacata
     3841 tgtcacagac aaatgctttt ctgtagagtg acccttggca agtcctttct gcagttcagc
     3901 accatgaaaa tggctcacgc ccccccaggc catcactccg tcattgggag gccgagtgtg
     3961 aatgggctgg cctatgctga atatgtcatc tacagaggag agcaggcata cccagagtat
     4021 ctcatcacct accagatcat gaagccggaa gctccttcac agaccacggc agctgcagag
     4081 cagaagacct agtgaatgcc cactggtaaa ggccagattg gatttaaacc tgggactgga
     4141 tgacagtgga ttgttttcaa caaaatcaat attctataaa tccgtgacag cctagaaata
     4201 agctgtttgt cttttataaa gcattgcgat agtgatgaat atagtatgag taactgatac
     4261 atactcaact gctactgttc cctttgagga aatgtttaca ggggcggcct tttaacatat
     4321 ctcaggctca ttttcattgt agttatccat tgctaagaca ggattgcttc aatctagact
     4381 tggaaaaaaa gaaaacataa ccagtacttt cccaaatgtt cacaattcac acactacatt
     4441 tgctttgcta tatatggcgc gtgtatatag taaatataca catatgacag gttcattttt
     4501 cgttttttct gaacactcat cgttcacttt tttttgctat cgttgttgtt gttactttga
     4561 aaatgagccg agccttcttg aggatatttt gcacaaagtc acactgacta aaatcactag
     4621 tgatgtaacc caagcttctg gctgagcaag gcttagtttc cacttttttt tttttcccac
     4681 tgatttattt tgtatctgta cttcttatca acgtaaactg agatggaaag gaaaaacacc
     4741 acgtttcagt ttccttttat tgattggcca gtcttacaag ggaaaggcac aaacatcaac
     4801 ctgatttagg agctcccaag ttcagagcag tcgaagccaa tgagagccac tcgcactttc
     4861 caactcaggc ctgcctccga cgtgttcagg acggtgctgg agggccagga agagcccagc
     4921 cagcgagagg cttgagtgat gctgttgtga cgttcagagg ggagaccgcc agggaggcct
     4981 gtgaatccag gagaagcagc attacgacac atgaggggcc tgtggtgcga taataggacc
     5041 gcagaaaagg acaacgaggg ctcctcacag aaaacacgac ttctctccac ttaacccgcg
     5101 ccaccagaat tgtcgccccc aaaattagct gccttatttc caaattcagt ggaattattg
     5161 tactgcatta gagtctcaaa acaattacct tattgtttct ctagtttaga aagctgggat
     5221 tcaaatcctg tgtagtcact agataggcac agatgcaaga acttttctgt ttactccaga
     5281 tttggggttt attttgagtg aggtgcttcc gatagtttgt gtaggtccct gcactaaatt
     5341 tttgaaccat tttctcaaac ttcttagtag acaaggagaa caaaaatgga aaccaaagct
     5401 ctttcagtta ctttttaaat gaaagtggag aagtaaccat actgttcctt cctgaagtcg
     5461 ctactttgtt ttgctttttc tctcaacatt tgtcaagcgc acattgttac ttgtaaaaaa
     5521 ttatccatta cagttctcac gcttgccctt ttcaccttaa ctgaatattg aattaagtgc
     5581 attaacttac ttactttgac atgctatgcg tctactcagc ttcgaagcaa aagtaacata
     5641 aatgtgatgg aaaaacagtg tgacgcaaac ttgccatttc aacttaaagt cctgaaaact
     5701 aacttgcttg tttgttcttt aatacaggct gattaagctg tgacctcatt taatctcctg
     5761 aggaaaaata aaatggttac atgcaaagat tctagaatag gctcttaaaa tatacatttt
     5821 gctttccttt tggcttgagt ccaatgctag aactagacat cgggaactag ttttgagttt
     5881 tatagctgaa tcttgcatgg gtcctcaaaa ttaaatcaag aattagcctc agttgttgct
     5941 tctattgaag ttttagtgac ccaagctggg tgtttgtgtc ttggctactt gtttaatagc
     6001 actagaattc cacatgaagc tctcaagttt gatatccatt gagggctttt ttcctccctt
     6061 ccttcttttt tgctgtgtgt aacagtgggt tgaaggaatt ggcatctgtg tagttttcag
     6121 tagctgtgaa agtgtatatt acttgcctcc ccaattagat atagtttaaa atggtaaaca
     6181 cagctgtgat ttttagttaa ataaaagggt taatatggta tagatcccaa aagctttata
     6241 gcttcattaa aaagataagc cactacccaa ctgtggttat atgttatttc catcatacta
     6301 actagattaa cggatgtgcc agttttaaac ttcagcctta cacttgagaa ggtaaactgt
     6361 ggttcagtat ttaaaccgcc aatgttacgt atctgatgtt ctgtgtgcca agtaaaggta
     6421 ctgtgtgtaa ggaggacatt tgctgtgctt cttgtctcgt aatgattcaa gtatatagta
     6481 gttcttgaaa gaatgtgtac atattattca tctgctgaag agaatgagtt cattgatgtc
     6541 tcacaggagc caaatacatt ttttcaaaac ttgaaaacca aaggtcatca tgagtgcatt
     6601 caagttagca aaagttgatt gcgtttggaa tttccaccca tagcagtgtg aaaaaccctt
     6661 tggaactcaa aagcatggct ttaagttagg ctaaaatgca cttaatttct tgcgtacaca
     6721 ctgtatagaa acactagcaa gtgaggactt ccagtgtggc ctcccctgag tggcccctct
     6781 gtttcccaaa ccatatagaa gagagaatcc agacgcctcc accttttcca ccacaggtct
     6841 gacatcaaag ggcttctaga cctgatggcc cagtttgcta gctattggca tcagttaagt
     6901 gctctggact ggacactttc tccttgtact tggcctcctt cccttttccc cagattgcta
     6961 gtctggaatt ataattagct ccagcaatta cctttgaccc ctctcatttt cctcctttct
     7021 ccatcttgag tcttgcatat ggcgaccgta cctctgtatc cacttcgcaa ctagaactgg
     7081 gtattaagcc tcatgtgctc tgctcggaag attctgccac tttgtcaaca aatgacagca
     7141 tggaacccag agttttaatt ctatgcaaaa taatagcagt acaaccagga ttcttcctta
     7201 ccttttcctt cttggaattt ggaatctcta gcttttcagt aacataagta gaataaacag
     7261 tattaggatg tttttgtgaa atggcaccct tgtgctcgtt tgaacttgat gttagtggct
     7321 acagtaattt ccctttgctc tcaaaatagc gaagtgcatt gatatatgca gagaaatgcc
     7381 tgaatgtggc aaataaagta atatagatga atattctatt attatagcct ttatacaaaa
     7441 aaataaactt ttggtgtatg ctggaagaca gcattagaat acaatgagtt gtctatgttt
     7501 ttctctattt cagtaagtct cccacctgca caaaggttat tggccactgc ttaccctccc
     7561 tttttttttt tttaacatct ttattggagt ataattgctt tacgatgttg tattagtttc
     7621 tgctttataa caaagtgaat cagctataca tatacataca tccccatatc ccctccctct
     7681 tgcgtctccc tcccaccctc tctatcccac ccctctaggt ggacacaaag cactgagctg
     7741 atctccctgt gctatgcggc tgcttcccac tagctatctg ttttacattt ggtagtgtat
     7801 atgtgtccat gctactctct cacttcatcc cagcttaccc tcccttttaa aacgtgtgca
     7861 ccttctggat ttctgtaatt gctttcaaac agagatggta tgtattttta agcacctttc
     7921 ccccagtgtg tccagatccc atttgtatga taatctgtga taaacagcct tttttctgtg
     7981 ttttctgttg ggcagttatc ttgcatagag ctatagattt tagtcattca ggcaacactc
     8041 aaaactgaca taaagatagg gtttcatgtg tcagaaattt acttaaagac tgaagttaaa
     8101 cttctttgtt gtcaaatcag tgacagagaa atgaaaagac agtgattgtg aagataatat
     8161 ttgcactttg gctggacacg tctagcacaa gaaaaggaaa tgcatttaaa aaaaaaaaaa
     8221 aaaaacaccc taaaaagtga ggcttcttca gatactttgt gagttctgaa attaatagac
     8281 actctttctt cttaagaaag ccttaactat ggcagaaact ttttaacctt ttatatccta
     8341 ataaatacag agttgtaatt ccatttctca gtgtgtgaaa ggtgtcaccg agttgggtgt
     8401 atctccatgt atctcacacc tggtaggcgt acttaatgag agtctgtttc ataagtaagc
     8461 ctcctttacg tgcaaaggag ctgagagaat tgatccaccc caatttctct acatctgaac
     8521 ttcctcagct accaaatctt ctggttcaga gaaatgctag aaagattttg aaacccatta
     8581 agttttgtgc acgtggggat tggcaacaac tcataaagtg ataccatgta gaattggggt
     8641 gttgcacaag ctgattttta atcattttaa aatataaacc aaaaaaaaaa aaatataaac
     8701 cacggtgata agtgaaaagc agtaggaaac taaagatttt atatactaag accaaacgtg
     8761 ctcacgatgt gaccggtttt aaacgtctgc cagagggttg tgcctccttt gaaataacgt
     8821 tcacacagta gagatgattg cattctgact cttcgttctt tcgtgttttc ttttgcgact
     8881 tacactttca cgtctccacg cgcagcccac cacccatctt ttcaaacaga tttctcatgc
     8941 tctagaacgc agagtgttcg gttatttttc atctgtcggc ccttttttgc aggcagccct
     9001 tgaagcccct tgttgattcc tagcatttgc agagaaatgt agttaaaccc tggtaggggg
     9061 gtgtctctcc cacactccca ggcccctccc aaggttcagg atgaaaaact agagtacaca
     9121 accgtaaaaa ttagaaaaga accaaaatct ttaaggctaa tagcctagac ctagaagatg
     9181 accttgacta tataaccatt gtattcatta cacagaatat ttaaactctt catgtgcata
     9241 gaatacctgc ctctgctttc actgtgtcaa gctcaccctg tctatgtggt agtagtattt
     9301 gtctgatacc tacgaactaa aaaggtactt ttatcaacaa ggtttctcaa acacattaca
     9361 aaaccagctt tgaggaaatc tagagtgttt cctggcaaca gcatttggag tagtaactgt
     9421 attttctcat tgtgatcttg gtctgtttac gtaaccaatg tagtgactct ttggttcatc
     9481 attggtggtg ttttcatttg tagtctctgt gtgacccacc agtggcaggg tgtcccaagc
     9541 ccctttcctt tcctttttgc atttgtcttt ttgtagaatt gccagataaa atacaagaca
     9601 cccagttcaa tttgaatttc aaataaacaa ataattgtgt ctcttaagta tggttcatgc
     9661 attatttggc atatatttac tgcaaaaaaa atattattta tctgaaattg aaacttaact
     9721 gaacatccta ggggttttgg ctttgctttg ttttgtttta ctgaatctgg caaccctatc
     9781 gatttggttg tggaaaatcg ctttcagcat gtaaattctt ctagatttca ccatctttca
     9841 cgtggaatgg cacctttttt cccctcatcc tctactttcc aaaagagggc atcaaggaat
     9901 tcaacctgcc tgcatggtgg gtttctattt aaggcatctt tatgattata tttaaccagt
     9961 aactgtgctt tggctaaatg tctaacttac agtacttgta attgtttaat attcaataaa
    10021 agcattttta aagtttactg ta
//
LOCUS       XM_032618358            4874 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 3 subunit
            mu 2 (AP3M2), transcript variant X1, mRNA.
ACCESSION   XM_032618358
VERSION     XM_032618358.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4874
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4874
                     /gene="AP3M2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 17
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746728"
     CDS             1206..2462
                     /gene="AP3M2"
                     /codon_start=1
                     /product="AP-3 complex subunit mu-2 isoform X1"
                     /protein_id="XP_032474249.1"
                     /db_xref="GeneID:116746728"
                     /translation="MIHSLFLINSAGDIFLEKHWKSVVSRSVCDYFFEAQERATEAEN
                     VPPVISTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVL
                     KDNVVVVYEVLEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTG
                     QLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDL
                     TLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYV
                     KHNISFRDSSSLGRFEITVGPKQTMGKSIEGVTVSSQMPRGVLSMNLTPSQGTHTFDP
                     VTKMLSWDVGKINPQKLPSLKGTVSLQAGASKPDENPTINLQFKIQQLAISGLKVNRL
                     DMYGEKYKPFKGIKYMTKAGKFQVRT"
     misc_feature    1212..1628
                     /gene="AP3M2"
                     /note="AP-3 complex subunit mu N-terminal domain; Region:
                     AP3_Mu_N; cd14837"
                     /db_xref="CDD:341441"
     misc_feature    order(1257..1259,1266..1268,1341..1346,1368..1370,
                     1374..1376,1380..1382,1416..1424,1428..1436,1443..1445,
                     1455..1457,1533..1538,1545..1550,1554..1562,1566..1577,
                     1602..1604,1608..1613)
                     /gene="AP3M2"
                     /note="putative AP-3 beta interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:341441"
     misc_feature    1698..2459
                     /gene="AP3M2"
                     /note="C-terminal domain of medium Mu3B subunit in
                     neuron-specific adaptor protein (AP) complex AP-3; Region:
                     AP-3_Mu3B_Cterm; cd09261"
                     /db_xref="CDD:211372"
     misc_feature    order(1743..1751,1830..1832,2121..2123,2337..2339,
                     2343..2345,2370..2372,2412..2423,2427..2429)
                     /gene="AP3M2"
                     /note="putative signal peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:211372"
ORIGIN      
        1 gaacggtggg cgctgcgaag aacaagtagg ccccggatcg tgctcacacc ttaatcctcc
       61 cgcgtctacc tcgccccaag ctgcctccat cctccctgcg accagcgcag aaataaccct
      121 cgttggcagc cgactctgcg ccgccacagc gtggctcccc ggcccctctc cctcccgcag
      181 cctcgtcgcc ggcagaggga ttaagctcac cctgcgacac ttggtacaac aggccttcgc
      241 gatttggcca cctggatcag ttcgtggagt ggccacagct ggggtcccgc gcggccgcct
      301 cgtttctggg gactggcacc gtagagatgc cgccgcctga gggacctggg ggatcccccc
      361 agagggattt ttttaaaggc agccaatgta gagccttgtg cataacatgt acttagaaaa
      421 tggggtctga ctggataaat caagatcaca acgacagctc cattccgtgg accatcgcta
      481 tccagtagaa ataggcagcg atccacatac tgtgtaattt tacatgtttt agtaagcaca
      541 tttaaaaaat aaaccagttg aattaatttt tatatctttt atttacccaa tatatccaaa
      601 atatcaatat taagtataat ccgtattaag ttaatattat taattgactt aattgatatt
      661 aaattattgg taagctatct taaattcttt tttttttttc catacaaagc cttcaaaatc
      721 tggtgcgtgt cttacattca cagcacatct cagtttggac cagccacatc tgaagtactc
      781 agtggcccca tttgtccgat ggctactgta tgagactaca caaccatacc atttcttata
      841 ggtgtgtgtt gttgccaaat acatgaaact catcagtgtt ctttgaagcc ctcttgttac
      901 aaggaggcaa caaaaaacat gaggcagggg ctttttttct caaggagctg ccagtccagt
      961 tgagaaaata gacactcaaa aattaagtgg aattttaaat ggatatgatt caggcagtag
     1021 taaagatgac agtatatgat tagctgacaa atgagatggc tgataattac ccttaggaat
     1081 tctagagagt gatacttcgg gctcctgcag tagcggaaga cttgagtctc gtcctgaaag
     1141 agttgagcat ttgcagaggc tgtcggacgg aaaaagactt tcatctctca ctgacagcct
     1201 ccaccatgat tcacagcctt ttcttgatca actccgctgg agatattttc ctggagaaac
     1261 actggaagag tgtggtcagc cgttctgttt gcgattactt tttcgaggca caagagcgag
     1321 caactgaggc tgaaaatgtt cctccagtta tctccacccc tcaccactat ctcctaagtg
     1381 tttaccgtca caagatcttt tttgtggctg tgatccagac ggaggtgcca cctctgtttg
     1441 tcattgagtt ccttcaccga gtagtggaca cgtttcagga ttattttgga gtctgttcag
     1501 agcctgtatt aaaagacaat gtggttgtgg tttatgaggt attggaagag atgcttgaca
     1561 acgggtttcc attggctacc gagtcgaaca tcctcaaaga actgataaag ccgcccacta
     1621 tccttcgaac cgttgtcaac accatcacag gaagcaccaa tgtgggtgac cagcttccca
     1681 ccgggcagct gtccgtggtg ccttggcgac ggactggggt gaaatacacc aacaatgagg
     1741 cctattttga tgtgattgaa gagattgatg ccatcattga taaatcaggg tccacagtca
     1801 ctgccgagat ccagggtgtt atcgatgcct gcgtcaagct gaccggaatg cccgacctta
     1861 cgctttcctt catgaacccc aggctgctgg atgatgtcag cttccacccc tgcgtccgct
     1921 tcaagcgctg ggagtccgag cgcatcctct ccttcatccc tcccgacggc aacttccgcc
     1981 tgctctcgta ccacgtcagt gcacagaacc tggtggcgat tccagtttat gtcaaacata
     2041 acatcagctt ccgggacagt agttctcttg gccgctttga aataacggtg ggccctaagc
     2101 agactatggg gaagagcatc gagggggtga cggtcagcag ccagatgccc agaggcgtcc
     2161 tgagcatgaa cctcacgccg tctcagggca cgcacacgtt tgacccggtc accaagatgc
     2221 tgtcttggga tgtaggaaaa ataaatcccc aaaagctccc cagtttgaag gggaccgtga
     2281 gtcttcaggc tggagcttcc aaacccgatg agaaccccac gattaacctg cagtttaaga
     2341 tccagcagct ggccatttct ggactcaaag tgaatcgtct ggatatgtat ggagagaagt
     2401 acaaaccctt taagggcata aaatacatga ccaaagctgg caagttccaa gttcgaacct
     2461 gaagggagag ttctgcaaag agaacagtcg tgaacacttt ttcattgctt acttgtctaa
     2521 aagtaaaaac tgtcagccct ctcctaggtc actgcccact ctggaccacc tgctcctgtt
     2581 ttcccgtagc tacagtgccc cggagctaat gaagggaggc cgggccgcca gggaggcctg
     2641 cgcagaaccc acacaccagc ggcaccaagt cagttctcaa agcagaggcg tgcgatgcag
     2701 ggggaggtac ttgatgccgt atgtaactac ttgtgacatg gttaccacag gaaaagacca
     2761 gcatttgtta ctcgcttggc tttaattatc tgaagctaag gaaaggcgtc tttagttttt
     2821 gggttttttt aaaatttatt tattttattt ttagttattt ttggctgcgt tgggtctttg
     2881 ttgctgcgcg cgggctttct ctagttgcgg cgagcggggg ctactcttca ttacaatgca
     2941 ggggattctc actgcagtgg cttctcttgt tgtggtgcac gagctctagg cacacgcggg
     3001 cttcagtagt tgtggctcgc gggctctgta gttgtggctc gcgggctcta gagcgcaggc
     3061 tcagtagttg tggtgcacgg gcttagttgc cctgcggcat gtgggatctt cccacatcag
     3121 cacttgaacc catgtcccct gcattggcag gcggattctt aaccaccgcg tcaccaggga
     3181 agtcctgttt ttgtatttca agctgggaag aaagattaga aagagagagc aagcttggaa
     3241 gagaaggacc gttagccaag gaagggccag agaaggctct gttctcgggg cagcgtgaag
     3301 catacgtgca caccgcacac tgaaatgagg aaggtgggag gagctgtcca gctccacctg
     3361 cagggcggct gggatgaaca gagttgagtg agtttctttt tgacccttcc gctttcatac
     3421 aaacataaac atttgtactt ctggaaatgc actggaaact tcttaaattc gagtgcactg
     3481 ttgacatgga aaccccagca gaatcagatt ttcccttaaa gactacgatg ctctccgacc
     3541 ggttttccaa tactgaccgc tgcatgcctc cagcacgtgg cctggcatct tcagcgagga
     3601 tgagctgccc tcttccaggg ggtgttgcct gaaacgcctc tttccctaac cccccaacgg
     3661 ctccactcac ttcactctac agaactcctg ttccccgagg agcgcttcag agaagccaat
     3721 cccatcaccc ctagggcagc aggttgtgtg tcatagtatc ggagtgtaga tggccccctc
     3781 gtgccacctc tgtgacccag tggttccttg ttcatgtctg tcagtgctgc cctggtgctg
     3841 cagtccgacc ttcccgtctg cagcttttcc agttgtgacc ctaagtgaga aggatgctga
     3901 ccaccgaggg cacggccagt cctgggagct gcccagtaaa gttatttcct cggagtctcc
     3961 actatataat gtgttcatta acaatgtata tcgaccagtc ggtttttgtt ttaagacaaa
     4021 aaaatctcct gaatcgttga ataaaactga tgttgtagga agatgggccg tgttgatcct
     4081 gtgtagcctg gtttaagaaa cacgggcaac tgaaggcaga cctcaggtgt tcccagcagg
     4141 gactttttac tctagtttaa tacgcccatt acccactgaa atatttatag aaaagacagg
     4201 tttttaaaat tataccttta ggagcgatac tgcaccctgc ttcgtgcagg gggaaaaatg
     4261 aagaccttgt actctgcaaa ccctgtgttt tttctctaaa accctgtttc caaatacttc
     4321 agcaattgtt ttgctctagt tttctcttcc tacttcctgg acttgttttt gttgcagaat
     4381 actgttgctt tatggttttc ctctggggtc aactgtgctg gggacagaca gcacatgtgt
     4441 ctcatactcc atcactccag aatttgtcct ggattcccag gtcccataca cacctgccat
     4501 ggaagggaga cgcctctgcc tgtggattcc agaataccgg agctgcttct cccgagggct
     4561 ctggaggatt tcagggtttc ctcggtcata ggaaacaacc gatgttggtc cctgaatatt
     4621 cttaggtttg taagtccagc tgtccctcca gggcagctca tcctaatttc aagggaagaa
     4681 cttaaggaga aataaagcac cggggctgtg ggaggcaccc ctgggctgca gacccctggc
     4741 cacccccttc agccggtggt gtgttagcat aggtggggcc gggcgcctct gccgaaccgc
     4801 tcggttccac acgtgtttaa cgtgcagaag cacctgctgt gtttaaatgt taataaagtt
     4861 gagtgttaac agtc
//
LOCUS       XM_032618360            3881 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 3 subunit
            mu 2 (AP3M2), transcript variant X2, mRNA.
ACCESSION   XM_032618360
VERSION     XM_032618360.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3881
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3881
                     /gene="AP3M2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 17
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746728"
     CDS             213..1469
                     /gene="AP3M2"
                     /codon_start=1
                     /product="AP-3 complex subunit mu-2 isoform X1"
                     /protein_id="XP_032474251.1"
                     /db_xref="GeneID:116746728"
                     /translation="MIHSLFLINSAGDIFLEKHWKSVVSRSVCDYFFEAQERATEAEN
                     VPPVISTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVL
                     KDNVVVVYEVLEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTG
                     QLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDL
                     TLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYV
                     KHNISFRDSSSLGRFEITVGPKQTMGKSIEGVTVSSQMPRGVLSMNLTPSQGTHTFDP
                     VTKMLSWDVGKINPQKLPSLKGTVSLQAGASKPDENPTINLQFKIQQLAISGLKVNRL
                     DMYGEKYKPFKGIKYMTKAGKFQVRT"
     misc_feature    219..635
                     /gene="AP3M2"
                     /note="AP-3 complex subunit mu N-terminal domain; Region:
                     AP3_Mu_N; cd14837"
                     /db_xref="CDD:341441"
     misc_feature    order(264..266,273..275,348..353,375..377,381..383,
                     387..389,423..431,435..443,450..452,462..464,540..545,
                     552..557,561..569,573..584,609..611,615..620)
                     /gene="AP3M2"
                     /note="putative AP-3 beta interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:341441"
     misc_feature    705..1466
                     /gene="AP3M2"
                     /note="C-terminal domain of medium Mu3B subunit in
                     neuron-specific adaptor protein (AP) complex AP-3; Region:
                     AP-3_Mu3B_Cterm; cd09261"
                     /db_xref="CDD:211372"
     misc_feature    order(750..758,837..839,1128..1130,1344..1346,1350..1352,
                     1377..1379,1419..1430,1434..1436)
                     /gene="AP3M2"
                     /note="putative signal peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:211372"
ORIGIN      
        1 ggcggccggc gggcgcgggg gggggcctgg gggcggggcc tgcccgcgcg gccgaacggt
       61 gggcgctgcg aagaacaagt agggaattct agagagtgat acttcgggct cctgcagtag
      121 cggaagactt gagtctcgtc ctgaaagagt tgagcatttg cagaggctgt cggacggaaa
      181 aagactttca tctctcactg acagcctcca ccatgattca cagccttttc ttgatcaact
      241 ccgctggaga tattttcctg gagaaacact ggaagagtgt ggtcagccgt tctgtttgcg
      301 attacttttt cgaggcacaa gagcgagcaa ctgaggctga aaatgttcct ccagttatct
      361 ccacccctca ccactatctc ctaagtgttt accgtcacaa gatctttttt gtggctgtga
      421 tccagacgga ggtgccacct ctgtttgtca ttgagttcct tcaccgagta gtggacacgt
      481 ttcaggatta ttttggagtc tgttcagagc ctgtattaaa agacaatgtg gttgtggttt
      541 atgaggtatt ggaagagatg cttgacaacg ggtttccatt ggctaccgag tcgaacatcc
      601 tcaaagaact gataaagccg cccactatcc ttcgaaccgt tgtcaacacc atcacaggaa
      661 gcaccaatgt gggtgaccag cttcccaccg ggcagctgtc cgtggtgcct tggcgacgga
      721 ctggggtgaa atacaccaac aatgaggcct attttgatgt gattgaagag attgatgcca
      781 tcattgataa atcagggtcc acagtcactg ccgagatcca gggtgttatc gatgcctgcg
      841 tcaagctgac cggaatgccc gaccttacgc tttccttcat gaaccccagg ctgctggatg
      901 atgtcagctt ccacccctgc gtccgcttca agcgctggga gtccgagcgc atcctctcct
      961 tcatccctcc cgacggcaac ttccgcctgc tctcgtacca cgtcagtgca cagaacctgg
     1021 tggcgattcc agtttatgtc aaacataaca tcagcttccg ggacagtagt tctcttggcc
     1081 gctttgaaat aacggtgggc cctaagcaga ctatggggaa gagcatcgag ggggtgacgg
     1141 tcagcagcca gatgcccaga ggcgtcctga gcatgaacct cacgccgtct cagggcacgc
     1201 acacgtttga cccggtcacc aagatgctgt cttgggatgt aggaaaaata aatccccaaa
     1261 agctccccag tttgaagggg accgtgagtc ttcaggctgg agcttccaaa cccgatgaga
     1321 accccacgat taacctgcag tttaagatcc agcagctggc catttctgga ctcaaagtga
     1381 atcgtctgga tatgtatgga gagaagtaca aaccctttaa gggcataaaa tacatgacca
     1441 aagctggcaa gttccaagtt cgaacctgaa gggagagttc tgcaaagaga acagtcgtga
     1501 acactttttc attgcttact tgtctaaaag taaaaactgt cagccctctc ctaggtcact
     1561 gcccactctg gaccacctgc tcctgttttc ccgtagctac agtgccccgg agctaatgaa
     1621 gggaggccgg gccgccaggg aggcctgcgc agaacccaca caccagcggc accaagtcag
     1681 ttctcaaagc agaggcgtgc gatgcagggg gaggtacttg atgccgtatg taactacttg
     1741 tgacatggtt accacaggaa aagaccagca tttgttactc gcttggcttt aattatctga
     1801 agctaaggaa aggcgtcttt agtttttggg tttttttaaa atttatttat tttattttta
     1861 gttatttttg gctgcgttgg gtctttgttg ctgcgcgcgg gctttctcta gttgcggcga
     1921 gcgggggcta ctcttcatta caatgcaggg gattctcact gcagtggctt ctcttgttgt
     1981 ggtgcacgag ctctaggcac acgcgggctt cagtagttgt ggctcgcggg ctctgtagtt
     2041 gtggctcgcg ggctctagag cgcaggctca gtagttgtgg tgcacgggct tagttgccct
     2101 gcggcatgtg ggatcttccc acatcagcac ttgaacccat gtcccctgca ttggcaggcg
     2161 gattcttaac caccgcgtca ccagggaagt cctgtttttg tatttcaagc tgggaagaaa
     2221 gattagaaag agagagcaag cttggaagag aaggaccgtt agccaaggaa gggccagaga
     2281 aggctctgtt ctcggggcag cgtgaagcat acgtgcacac cgcacactga aatgaggaag
     2341 gtgggaggag ctgtccagct ccacctgcag ggcggctggg atgaacagag ttgagtgagt
     2401 ttctttttga cccttccgct ttcatacaaa cataaacatt tgtacttctg gaaatgcact
     2461 ggaaacttct taaattcgag tgcactgttg acatggaaac cccagcagaa tcagattttc
     2521 ccttaaagac tacgatgctc tccgaccggt tttccaatac tgaccgctgc atgcctccag
     2581 cacgtggcct ggcatcttca gcgaggatga gctgccctct tccagggggt gttgcctgaa
     2641 acgcctcttt ccctaacccc ccaacggctc cactcacttc actctacaga actcctgttc
     2701 cccgaggagc gcttcagaga agccaatccc atcaccccta gggcagcagg ttgtgtgtca
     2761 tagtatcgga gtgtagatgg ccccctcgtg ccacctctgt gacccagtgg ttccttgttc
     2821 atgtctgtca gtgctgccct ggtgctgcag tccgaccttc ccgtctgcag cttttccagt
     2881 tgtgacccta agtgagaagg atgctgacca ccgagggcac ggccagtcct gggagctgcc
     2941 cagtaaagtt atttcctcgg agtctccact atataatgtg ttcattaaca atgtatatcg
     3001 accagtcggt ttttgtttta agacaaaaaa atctcctgaa tcgttgaata aaactgatgt
     3061 tgtaggaaga tgggccgtgt tgatcctgtg tagcctggtt taagaaacac gggcaactga
     3121 aggcagacct caggtgttcc cagcagggac tttttactct agtttaatac gcccattacc
     3181 cactgaaata tttatagaaa agacaggttt ttaaaattat acctttagga gcgatactgc
     3241 accctgcttc gtgcaggggg aaaaatgaag accttgtact ctgcaaaccc tgtgtttttt
     3301 ctctaaaacc ctgtttccaa atacttcagc aattgttttg ctctagtttt ctcttcctac
     3361 ttcctggact tgtttttgtt gcagaatact gttgctttat ggttttcctc tggggtcaac
     3421 tgtgctgggg acagacagca catgtgtctc atactccatc actccagaat ttgtcctgga
     3481 ttcccaggtc ccatacacac ctgccatgga agggagacgc ctctgcctgt ggattccaga
     3541 ataccggagc tgcttctccc gagggctctg gaggatttca gggtttcctc ggtcatagga
     3601 aacaaccgat gttggtccct gaatattctt aggtttgtaa gtccagctgt ccctccaggg
     3661 cagctcatcc taatttcaag ggaagaactt aaggagaaat aaagcaccgg ggctgtggga
     3721 ggcacccctg ggctgcagac ccctggccac ccccttcagc cggtggtgtg ttagcatagg
     3781 tggggccggg cgcctctgcc gaaccgctcg gttccacacg tgtttaacgt gcagaagcac
     3841 ctgctgtgtt taaatgttaa taaagttgag tgttaacagt c
//
LOCUS       XM_032618361            4738 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 3 subunit
            mu 2 (AP3M2), transcript variant X3, mRNA.
ACCESSION   XM_032618361
VERSION     XM_032618361.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4738
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4738
                     /gene="AP3M2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 17
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746728"
     CDS             1070..2326
                     /gene="AP3M2"
                     /codon_start=1
                     /product="AP-3 complex subunit mu-2 isoform X1"
                     /protein_id="XP_032474252.1"
                     /db_xref="GeneID:116746728"
                     /translation="MIHSLFLINSAGDIFLEKHWKSVVSRSVCDYFFEAQERATEAEN
                     VPPVISTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVL
                     KDNVVVVYEVLEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTG
                     QLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDL
                     TLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYV
                     KHNISFRDSSSLGRFEITVGPKQTMGKSIEGVTVSSQMPRGVLSMNLTPSQGTHTFDP
                     VTKMLSWDVGKINPQKLPSLKGTVSLQAGASKPDENPTINLQFKIQQLAISGLKVNRL
                     DMYGEKYKPFKGIKYMTKAGKFQVRT"
     misc_feature    1076..1492
                     /gene="AP3M2"
                     /note="AP-3 complex subunit mu N-terminal domain; Region:
                     AP3_Mu_N; cd14837"
                     /db_xref="CDD:341441"
     misc_feature    order(1121..1123,1130..1132,1205..1210,1232..1234,
                     1238..1240,1244..1246,1280..1288,1292..1300,1307..1309,
                     1319..1321,1397..1402,1409..1414,1418..1426,1430..1441,
                     1466..1468,1472..1477)
                     /gene="AP3M2"
                     /note="putative AP-3 beta interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:341441"
     misc_feature    1562..2323
                     /gene="AP3M2"
                     /note="C-terminal domain of medium Mu3B subunit in
                     neuron-specific adaptor protein (AP) complex AP-3; Region:
                     AP-3_Mu3B_Cterm; cd09261"
                     /db_xref="CDD:211372"
     misc_feature    order(1607..1615,1694..1696,1985..1987,2201..2203,
                     2207..2209,2234..2236,2276..2287,2291..2293)
                     /gene="AP3M2"
                     /note="putative signal peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:211372"
ORIGIN      
        1 ctgcccgcgc ggccgaacgg tgggcgctgc gaagaacaag taggcctcgt cgccggcaga
       61 gggattaagc tcaccctgcg acacttggta caacaggcct tcgcgatttg gccacctgga
      121 tcagttcgtg gagtggccac agctggggtc ccgcgcggcc gcctcgtttc tggggactgg
      181 caccgtagag atgccgccgc ctgagggacc tgggggatcc ccccagaggg atttttttaa
      241 aggcagccaa tgtagagcct tgtgcataac atgtacttag aaaatggggt ctgactggat
      301 aaatcaagat cacaacgaca gctccattcc gtggaccatc gctatccagt agaaataggc
      361 agcgatccac atactgtgta attttacatg ttttagtaag cacatttaaa aaataaacca
      421 gttgaattaa tttttatatc ttttatttac ccaatatatc caaaatatca atattaagta
      481 taatccgtat taagttaata ttattaattg acttaattga tattaaatta ttggtaagct
      541 atcttaaatt cttttttttt tttccataca aagccttcaa aatctggtgc gtgtcttaca
      601 ttcacagcac atctcagttt ggaccagcca catctgaagt actcagtggc cccatttgtc
      661 cgatggctac tgtatgagac tacacaacca taccatttct tataggtgtg tgttgttgcc
      721 aaatacatga aactcatcag tgttctttga agccctcttg ttacaaggag gcaacaaaaa
      781 acatgaggca ggggcttttt ttctcaagga gctgccagtc cagttgagaa aatagacact
      841 caaaaattaa gtggaatttt aaatggatat gattcaggca gtagtaaaga tgacagtata
      901 tgattagctg acaaatgaga tggctgataa ttacccttag gaattctaga gagtgatact
      961 tcgggctcct gcagtagcgg aagacttgag tctcgtcctg aaagagttga gcatttgcag
     1021 aggctgtcgg acggaaaaag actttcatct ctcactgaca gcctccacca tgattcacag
     1081 ccttttcttg atcaactccg ctggagatat tttcctggag aaacactgga agagtgtggt
     1141 cagccgttct gtttgcgatt actttttcga ggcacaagag cgagcaactg aggctgaaaa
     1201 tgttcctcca gttatctcca cccctcacca ctatctccta agtgtttacc gtcacaagat
     1261 cttttttgtg gctgtgatcc agacggaggt gccacctctg tttgtcattg agttccttca
     1321 ccgagtagtg gacacgtttc aggattattt tggagtctgt tcagagcctg tattaaaaga
     1381 caatgtggtt gtggtttatg aggtattgga agagatgctt gacaacgggt ttccattggc
     1441 taccgagtcg aacatcctca aagaactgat aaagccgccc actatccttc gaaccgttgt
     1501 caacaccatc acaggaagca ccaatgtggg tgaccagctt cccaccgggc agctgtccgt
     1561 ggtgccttgg cgacggactg gggtgaaata caccaacaat gaggcctatt ttgatgtgat
     1621 tgaagagatt gatgccatca ttgataaatc agggtccaca gtcactgccg agatccaggg
     1681 tgttatcgat gcctgcgtca agctgaccgg aatgcccgac cttacgcttt ccttcatgaa
     1741 ccccaggctg ctggatgatg tcagcttcca cccctgcgtc cgcttcaagc gctgggagtc
     1801 cgagcgcatc ctctccttca tccctcccga cggcaacttc cgcctgctct cgtaccacgt
     1861 cagtgcacag aacctggtgg cgattccagt ttatgtcaaa cataacatca gcttccggga
     1921 cagtagttct cttggccgct ttgaaataac ggtgggccct aagcagacta tggggaagag
     1981 catcgagggg gtgacggtca gcagccagat gcccagaggc gtcctgagca tgaacctcac
     2041 gccgtctcag ggcacgcaca cgtttgaccc ggtcaccaag atgctgtctt gggatgtagg
     2101 aaaaataaat ccccaaaagc tccccagttt gaaggggacc gtgagtcttc aggctggagc
     2161 ttccaaaccc gatgagaacc ccacgattaa cctgcagttt aagatccagc agctggccat
     2221 ttctggactc aaagtgaatc gtctggatat gtatggagag aagtacaaac cctttaaggg
     2281 cataaaatac atgaccaaag ctggcaagtt ccaagttcga acctgaaggg agagttctgc
     2341 aaagagaaca gtcgtgaaca ctttttcatt gcttacttgt ctaaaagtaa aaactgtcag
     2401 ccctctccta ggtcactgcc cactctggac cacctgctcc tgttttcccg tagctacagt
     2461 gccccggagc taatgaaggg aggccgggcc gccagggagg cctgcgcaga acccacacac
     2521 cagcggcacc aagtcagttc tcaaagcaga ggcgtgcgat gcagggggag gtacttgatg
     2581 ccgtatgtaa ctacttgtga catggttacc acaggaaaag accagcattt gttactcgct
     2641 tggctttaat tatctgaagc taaggaaagg cgtctttagt ttttgggttt ttttaaaatt
     2701 tatttatttt atttttagtt atttttggct gcgttgggtc tttgttgctg cgcgcgggct
     2761 ttctctagtt gcggcgagcg ggggctactc ttcattacaa tgcaggggat tctcactgca
     2821 gtggcttctc ttgttgtggt gcacgagctc taggcacacg cgggcttcag tagttgtggc
     2881 tcgcgggctc tgtagttgtg gctcgcgggc tctagagcgc aggctcagta gttgtggtgc
     2941 acgggcttag ttgccctgcg gcatgtggga tcttcccaca tcagcacttg aacccatgtc
     3001 ccctgcattg gcaggcggat tcttaaccac cgcgtcacca gggaagtcct gtttttgtat
     3061 ttcaagctgg gaagaaagat tagaaagaga gagcaagctt ggaagagaag gaccgttagc
     3121 caaggaaggg ccagagaagg ctctgttctc ggggcagcgt gaagcatacg tgcacaccgc
     3181 acactgaaat gaggaaggtg ggaggagctg tccagctcca cctgcagggc ggctgggatg
     3241 aacagagttg agtgagtttc tttttgaccc ttccgctttc atacaaacat aaacatttgt
     3301 acttctggaa atgcactgga aacttcttaa attcgagtgc actgttgaca tggaaacccc
     3361 agcagaatca gattttccct taaagactac gatgctctcc gaccggtttt ccaatactga
     3421 ccgctgcatg cctccagcac gtggcctggc atcttcagcg aggatgagct gccctcttcc
     3481 agggggtgtt gcctgaaacg cctctttccc taacccccca acggctccac tcacttcact
     3541 ctacagaact cctgttcccc gaggagcgct tcagagaagc caatcccatc acccctaggg
     3601 cagcaggttg tgtgtcatag tatcggagtg tagatggccc cctcgtgcca cctctgtgac
     3661 ccagtggttc cttgttcatg tctgtcagtg ctgccctggt gctgcagtcc gaccttcccg
     3721 tctgcagctt ttccagttgt gaccctaagt gagaaggatg ctgaccaccg agggcacggc
     3781 cagtcctggg agctgcccag taaagttatt tcctcggagt ctccactata taatgtgttc
     3841 attaacaatg tatatcgacc agtcggtttt tgttttaaga caaaaaaatc tcctgaatcg
     3901 ttgaataaaa ctgatgttgt aggaagatgg gccgtgttga tcctgtgtag cctggtttaa
     3961 gaaacacggg caactgaagg cagacctcag gtgttcccag cagggacttt ttactctagt
     4021 ttaatacgcc cattacccac tgaaatattt atagaaaaga caggttttta aaattatacc
     4081 tttaggagcg atactgcacc ctgcttcgtg cagggggaaa aatgaagacc ttgtactctg
     4141 caaaccctgt gttttttctc taaaaccctg tttccaaata cttcagcaat tgttttgctc
     4201 tagttttctc ttcctacttc ctggacttgt ttttgttgca gaatactgtt gctttatggt
     4261 tttcctctgg ggtcaactgt gctggggaca gacagcacat gtgtctcata ctccatcact
     4321 ccagaatttg tcctggattc ccaggtccca tacacacctg ccatggaagg gagacgcctc
     4381 tgcctgtgga ttccagaata ccggagctgc ttctcccgag ggctctggag gatttcaggg
     4441 tttcctcggt cataggaaac aaccgatgtt ggtccctgaa tattcttagg tttgtaagtc
     4501 cagctgtccc tccagggcag ctcatcctaa tttcaaggga agaacttaag gagaaataaa
     4561 gcaccggggc tgtgggaggc acccctgggc tgcagacccc tggccacccc cttcagccgg
     4621 tggtgtgtta gcataggtgg ggccgggcgc ctctgccgaa ccgctcggtt ccacacgtgt
     4681 ttaacgtgca gaagcacctg ctgtgtttaa atgttaataa agttgagtgt taacagtc
//
LOCUS       XM_032618362            3817 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 3 subunit
            mu 2 (AP3M2), transcript variant X4, mRNA.
ACCESSION   XM_032618362
VERSION     XM_032618362.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3817
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3817
                     /gene="AP3M2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 17
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746728"
     CDS             149..1405
                     /gene="AP3M2"
                     /codon_start=1
                     /product="AP-3 complex subunit mu-2 isoform X1"
                     /protein_id="XP_032474253.1"
                     /db_xref="GeneID:116746728"
                     /translation="MIHSLFLINSAGDIFLEKHWKSVVSRSVCDYFFEAQERATEAEN
                     VPPVISTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVL
                     KDNVVVVYEVLEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTG
                     QLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDL
                     TLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYV
                     KHNISFRDSSSLGRFEITVGPKQTMGKSIEGVTVSSQMPRGVLSMNLTPSQGTHTFDP
                     VTKMLSWDVGKINPQKLPSLKGTVSLQAGASKPDENPTINLQFKIQQLAISGLKVNRL
                     DMYGEKYKPFKGIKYMTKAGKFQVRT"
     misc_feature    155..571
                     /gene="AP3M2"
                     /note="AP-3 complex subunit mu N-terminal domain; Region:
                     AP3_Mu_N; cd14837"
                     /db_xref="CDD:341441"
     misc_feature    order(200..202,209..211,284..289,311..313,317..319,
                     323..325,359..367,371..379,386..388,398..400,476..481,
                     488..493,497..505,509..520,545..547,551..556)
                     /gene="AP3M2"
                     /note="putative AP-3 beta interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:341441"
     misc_feature    641..1402
                     /gene="AP3M2"
                     /note="C-terminal domain of medium Mu3B subunit in
                     neuron-specific adaptor protein (AP) complex AP-3; Region:
                     AP-3_Mu3B_Cterm; cd09261"
                     /db_xref="CDD:211372"
     misc_feature    order(686..694,773..775,1064..1066,1280..1282,1286..1288,
                     1313..1315,1355..1366,1370..1372)
                     /gene="AP3M2"
                     /note="putative signal peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:211372"
ORIGIN      
        1 accataccat ttcttatagg aattctagag agtgatactt cgggctcctg cagtagcgga
       61 agacttgagt ctcgtcctga aagagttgag catttgcaga ggctgtcgga cggaaaaaga
      121 ctttcatctc tcactgacag cctccaccat gattcacagc cttttcttga tcaactccgc
      181 tggagatatt ttcctggaga aacactggaa gagtgtggtc agccgttctg tttgcgatta
      241 ctttttcgag gcacaagagc gagcaactga ggctgaaaat gttcctccag ttatctccac
      301 ccctcaccac tatctcctaa gtgtttaccg tcacaagatc ttttttgtgg ctgtgatcca
      361 gacggaggtg ccacctctgt ttgtcattga gttccttcac cgagtagtgg acacgtttca
      421 ggattatttt ggagtctgtt cagagcctgt attaaaagac aatgtggttg tggtttatga
      481 ggtattggaa gagatgcttg acaacgggtt tccattggct accgagtcga acatcctcaa
      541 agaactgata aagccgccca ctatccttcg aaccgttgtc aacaccatca caggaagcac
      601 caatgtgggt gaccagcttc ccaccgggca gctgtccgtg gtgccttggc gacggactgg
      661 ggtgaaatac accaacaatg aggcctattt tgatgtgatt gaagagattg atgccatcat
      721 tgataaatca gggtccacag tcactgccga gatccagggt gttatcgatg cctgcgtcaa
      781 gctgaccgga atgcccgacc ttacgctttc cttcatgaac cccaggctgc tggatgatgt
      841 cagcttccac ccctgcgtcc gcttcaagcg ctgggagtcc gagcgcatcc tctccttcat
      901 ccctcccgac ggcaacttcc gcctgctctc gtaccacgtc agtgcacaga acctggtggc
      961 gattccagtt tatgtcaaac ataacatcag cttccgggac agtagttctc ttggccgctt
     1021 tgaaataacg gtgggcccta agcagactat ggggaagagc atcgaggggg tgacggtcag
     1081 cagccagatg cccagaggcg tcctgagcat gaacctcacg ccgtctcagg gcacgcacac
     1141 gtttgacccg gtcaccaaga tgctgtcttg ggatgtagga aaaataaatc cccaaaagct
     1201 ccccagtttg aaggggaccg tgagtcttca ggctggagct tccaaacccg atgagaaccc
     1261 cacgattaac ctgcagttta agatccagca gctggccatt tctggactca aagtgaatcg
     1321 tctggatatg tatggagaga agtacaaacc ctttaagggc ataaaataca tgaccaaagc
     1381 tggcaagttc caagttcgaa cctgaaggga gagttctgca aagagaacag tcgtgaacac
     1441 tttttcattg cttacttgtc taaaagtaaa aactgtcagc cctctcctag gtcactgccc
     1501 actctggacc acctgctcct gttttcccgt agctacagtg ccccggagct aatgaaggga
     1561 ggccgggccg ccagggaggc ctgcgcagaa cccacacacc agcggcacca agtcagttct
     1621 caaagcagag gcgtgcgatg cagggggagg tacttgatgc cgtatgtaac tacttgtgac
     1681 atggttacca caggaaaaga ccagcatttg ttactcgctt ggctttaatt atctgaagct
     1741 aaggaaaggc gtctttagtt tttgggtttt tttaaaattt atttatttta tttttagtta
     1801 tttttggctg cgttgggtct ttgttgctgc gcgcgggctt tctctagttg cggcgagcgg
     1861 gggctactct tcattacaat gcaggggatt ctcactgcag tggcttctct tgttgtggtg
     1921 cacgagctct aggcacacgc gggcttcagt agttgtggct cgcgggctct gtagttgtgg
     1981 ctcgcgggct ctagagcgca ggctcagtag ttgtggtgca cgggcttagt tgccctgcgg
     2041 catgtgggat cttcccacat cagcacttga acccatgtcc cctgcattgg caggcggatt
     2101 cttaaccacc gcgtcaccag ggaagtcctg tttttgtatt tcaagctggg aagaaagatt
     2161 agaaagagag agcaagcttg gaagagaagg accgttagcc aaggaagggc cagagaaggc
     2221 tctgttctcg gggcagcgtg aagcatacgt gcacaccgca cactgaaatg aggaaggtgg
     2281 gaggagctgt ccagctccac ctgcagggcg gctgggatga acagagttga gtgagtttct
     2341 ttttgaccct tccgctttca tacaaacata aacatttgta cttctggaaa tgcactggaa
     2401 acttcttaaa ttcgagtgca ctgttgacat ggaaacccca gcagaatcag attttccctt
     2461 aaagactacg atgctctccg accggttttc caatactgac cgctgcatgc ctccagcacg
     2521 tggcctggca tcttcagcga ggatgagctg ccctcttcca gggggtgttg cctgaaacgc
     2581 ctctttccct aaccccccaa cggctccact cacttcactc tacagaactc ctgttccccg
     2641 aggagcgctt cagagaagcc aatcccatca cccctagggc agcaggttgt gtgtcatagt
     2701 atcggagtgt agatggcccc ctcgtgccac ctctgtgacc cagtggttcc ttgttcatgt
     2761 ctgtcagtgc tgccctggtg ctgcagtccg accttcccgt ctgcagcttt tccagttgtg
     2821 accctaagtg agaaggatgc tgaccaccga gggcacggcc agtcctggga gctgcccagt
     2881 aaagttattt cctcggagtc tccactatat aatgtgttca ttaacaatgt atatcgacca
     2941 gtcggttttt gttttaagac aaaaaaatct cctgaatcgt tgaataaaac tgatgttgta
     3001 ggaagatggg ccgtgttgat cctgtgtagc ctggtttaag aaacacgggc aactgaaggc
     3061 agacctcagg tgttcccagc agggactttt tactctagtt taatacgccc attacccact
     3121 gaaatattta tagaaaagac aggtttttaa aattatacct ttaggagcga tactgcaccc
     3181 tgcttcgtgc agggggaaaa atgaagacct tgtactctgc aaaccctgtg ttttttctct
     3241 aaaaccctgt ttccaaatac ttcagcaatt gttttgctct agttttctct tcctacttcc
     3301 tggacttgtt tttgttgcag aatactgttg ctttatggtt ttcctctggg gtcaactgtg
     3361 ctggggacag acagcacatg tgtctcatac tccatcactc cagaatttgt cctggattcc
     3421 caggtcccat acacacctgc catggaaggg agacgcctct gcctgtggat tccagaatac
     3481 cggagctgct tctcccgagg gctctggagg atttcagggt ttcctcggtc ataggaaaca
     3541 accgatgttg gtccctgaat attcttaggt ttgtaagtcc agctgtccct ccagggcagc
     3601 tcatcctaat ttcaagggaa gaacttaagg agaaataaag caccggggct gtgggaggca
     3661 cccctgggct gcagacccct ggccaccccc ttcagccggt ggtgtgttag cataggtggg
     3721 gccgggcgcc tctgccgaac cgctcggttc cacacgtgtt taacgtgcag aagcacctgc
     3781 tgtgtttaaa tgttaataaa gttgagtgtt aacagtc
//
LOCUS       XM_032618363            3872 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 3 subunit
            mu 2 (AP3M2), transcript variant X5, mRNA.
ACCESSION   XM_032618363
VERSION     XM_032618363.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3872
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3872
                     /gene="AP3M2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 17
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746728"
     CDS             204..1460
                     /gene="AP3M2"
                     /codon_start=1
                     /product="AP-3 complex subunit mu-2 isoform X1"
                     /protein_id="XP_032474254.1"
                     /db_xref="GeneID:116746728"
                     /translation="MIHSLFLINSAGDIFLEKHWKSVVSRSVCDYFFEAQERATEAEN
                     VPPVISTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVL
                     KDNVVVVYEVLEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTG
                     QLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDL
                     TLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYV
                     KHNISFRDSSSLGRFEITVGPKQTMGKSIEGVTVSSQMPRGVLSMNLTPSQGTHTFDP
                     VTKMLSWDVGKINPQKLPSLKGTVSLQAGASKPDENPTINLQFKIQQLAISGLKVNRL
                     DMYGEKYKPFKGIKYMTKAGKFQVRT"
     misc_feature    210..626
                     /gene="AP3M2"
                     /note="AP-3 complex subunit mu N-terminal domain; Region:
                     AP3_Mu_N; cd14837"
                     /db_xref="CDD:341441"
     misc_feature    order(255..257,264..266,339..344,366..368,372..374,
                     378..380,414..422,426..434,441..443,453..455,531..536,
                     543..548,552..560,564..575,600..602,606..611)
                     /gene="AP3M2"
                     /note="putative AP-3 beta interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:341441"
     misc_feature    696..1457
                     /gene="AP3M2"
                     /note="C-terminal domain of medium Mu3B subunit in
                     neuron-specific adaptor protein (AP) complex AP-3; Region:
                     AP-3_Mu3B_Cterm; cd09261"
                     /db_xref="CDD:211372"
     misc_feature    order(741..749,828..830,1119..1121,1335..1337,1341..1343,
                     1368..1370,1410..1421,1425..1427)
                     /gene="AP3M2"
                     /note="putative signal peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:211372"
ORIGIN      
        1 ccgtcgcggg cggtgctggc gagagtcccg ctggccggcc aatcagcggg cgagcggcgg
       61 ccggcgggcg cggggggggg cctgggggcg gggcctgccc gcgcggccga acggtgggcg
      121 ctgcgaagaa caagtaggag ttgagcattt gcagaggctg tcggacggaa aaagactttc
      181 atctctcact gacagcctcc accatgattc acagcctttt cttgatcaac tccgctggag
      241 atattttcct ggagaaacac tggaagagtg tggtcagccg ttctgtttgc gattactttt
      301 tcgaggcaca agagcgagca actgaggctg aaaatgttcc tccagttatc tccacccctc
      361 accactatct cctaagtgtt taccgtcaca agatcttttt tgtggctgtg atccagacgg
      421 aggtgccacc tctgtttgtc attgagttcc ttcaccgagt agtggacacg tttcaggatt
      481 attttggagt ctgttcagag cctgtattaa aagacaatgt ggttgtggtt tatgaggtat
      541 tggaagagat gcttgacaac gggtttccat tggctaccga gtcgaacatc ctcaaagaac
      601 tgataaagcc gcccactatc cttcgaaccg ttgtcaacac catcacagga agcaccaatg
      661 tgggtgacca gcttcccacc gggcagctgt ccgtggtgcc ttggcgacgg actggggtga
      721 aatacaccaa caatgaggcc tattttgatg tgattgaaga gattgatgcc atcattgata
      781 aatcagggtc cacagtcact gccgagatcc agggtgttat cgatgcctgc gtcaagctga
      841 ccggaatgcc cgaccttacg ctttccttca tgaaccccag gctgctggat gatgtcagct
      901 tccacccctg cgtccgcttc aagcgctggg agtccgagcg catcctctcc ttcatccctc
      961 ccgacggcaa cttccgcctg ctctcgtacc acgtcagtgc acagaacctg gtggcgattc
     1021 cagtttatgt caaacataac atcagcttcc gggacagtag ttctcttggc cgctttgaaa
     1081 taacggtggg ccctaagcag actatgggga agagcatcga gggggtgacg gtcagcagcc
     1141 agatgcccag aggcgtcctg agcatgaacc tcacgccgtc tcagggcacg cacacgtttg
     1201 acccggtcac caagatgctg tcttgggatg taggaaaaat aaatccccaa aagctcccca
     1261 gtttgaaggg gaccgtgagt cttcaggctg gagcttccaa acccgatgag aaccccacga
     1321 ttaacctgca gtttaagatc cagcagctgg ccatttctgg actcaaagtg aatcgtctgg
     1381 atatgtatgg agagaagtac aaacccttta agggcataaa atacatgacc aaagctggca
     1441 agttccaagt tcgaacctga agggagagtt ctgcaaagag aacagtcgtg aacacttttt
     1501 cattgcttac ttgtctaaaa gtaaaaactg tcagccctct cctaggtcac tgcccactct
     1561 ggaccacctg ctcctgtttt cccgtagcta cagtgccccg gagctaatga agggaggccg
     1621 ggccgccagg gaggcctgcg cagaacccac acaccagcgg caccaagtca gttctcaaag
     1681 cagaggcgtg cgatgcaggg ggaggtactt gatgccgtat gtaactactt gtgacatggt
     1741 taccacagga aaagaccagc atttgttact cgcttggctt taattatctg aagctaagga
     1801 aaggcgtctt tagtttttgg gtttttttaa aatttattta ttttattttt agttattttt
     1861 ggctgcgttg ggtctttgtt gctgcgcgcg ggctttctct agttgcggcg agcgggggct
     1921 actcttcatt acaatgcagg ggattctcac tgcagtggct tctcttgttg tggtgcacga
     1981 gctctaggca cacgcgggct tcagtagttg tggctcgcgg gctctgtagt tgtggctcgc
     2041 gggctctaga gcgcaggctc agtagttgtg gtgcacgggc ttagttgccc tgcggcatgt
     2101 gggatcttcc cacatcagca cttgaaccca tgtcccctgc attggcaggc ggattcttaa
     2161 ccaccgcgtc accagggaag tcctgttttt gtatttcaag ctgggaagaa agattagaaa
     2221 gagagagcaa gcttggaaga gaaggaccgt tagccaagga agggccagag aaggctctgt
     2281 tctcggggca gcgtgaagca tacgtgcaca ccgcacactg aaatgaggaa ggtgggagga
     2341 gctgtccagc tccacctgca gggcggctgg gatgaacaga gttgagtgag tttctttttg
     2401 acccttccgc tttcatacaa acataaacat ttgtacttct ggaaatgcac tggaaacttc
     2461 ttaaattcga gtgcactgtt gacatggaaa ccccagcaga atcagatttt cccttaaaga
     2521 ctacgatgct ctccgaccgg ttttccaata ctgaccgctg catgcctcca gcacgtggcc
     2581 tggcatcttc agcgaggatg agctgccctc ttccaggggg tgttgcctga aacgcctctt
     2641 tccctaaccc cccaacggct ccactcactt cactctacag aactcctgtt ccccgaggag
     2701 cgcttcagag aagccaatcc catcacccct agggcagcag gttgtgtgtc atagtatcgg
     2761 agtgtagatg gccccctcgt gccacctctg tgacccagtg gttccttgtt catgtctgtc
     2821 agtgctgccc tggtgctgca gtccgacctt cccgtctgca gcttttccag ttgtgaccct
     2881 aagtgagaag gatgctgacc accgagggca cggccagtcc tgggagctgc ccagtaaagt
     2941 tatttcctcg gagtctccac tatataatgt gttcattaac aatgtatatc gaccagtcgg
     3001 tttttgtttt aagacaaaaa aatctcctga atcgttgaat aaaactgatg ttgtaggaag
     3061 atgggccgtg ttgatcctgt gtagcctggt ttaagaaaca cgggcaactg aaggcagacc
     3121 tcaggtgttc ccagcaggga ctttttactc tagtttaata cgcccattac ccactgaaat
     3181 atttatagaa aagacaggtt tttaaaatta tacctttagg agcgatactg caccctgctt
     3241 cgtgcagggg gaaaaatgaa gaccttgtac tctgcaaacc ctgtgttttt tctctaaaac
     3301 cctgtttcca aatacttcag caattgtttt gctctagttt tctcttccta cttcctggac
     3361 ttgtttttgt tgcagaatac tgttgcttta tggttttcct ctggggtcaa ctgtgctggg
     3421 gacagacagc acatgtgtct catactccat cactccagaa tttgtcctgg attcccaggt
     3481 cccatacaca cctgccatgg aagggagacg cctctgcctg tggattccag aataccggag
     3541 ctgcttctcc cgagggctct ggaggatttc agggtttcct cggtcatagg aaacaaccga
     3601 tgttggtccc tgaatattct taggtttgta agtccagctg tccctccagg gcagctcatc
     3661 ctaatttcaa gggaagaact taaggagaaa taaagcaccg gggctgtggg aggcacccct
     3721 gggctgcaga cccctggcca cccccttcag ccggtggtgt gttagcatag gtggggccgg
     3781 gcgcctctgc cgaaccgctc ggttccacac gtgtttaacg tgcagaagca cctgctgtgt
     3841 ttaaatgtta ataaagttga gtgttaacag tc
//
LOCUS       XM_032618364            3822 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus adaptor related protein complex 3 subunit
            mu 2 (AP3M2), transcript variant X6, mRNA.
ACCESSION   XM_032618364
VERSION     XM_032618364.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3822
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3822
                     /gene="AP3M2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746728"
     CDS             214..1410
                     /gene="AP3M2"
                     /codon_start=1
                     /product="AP-3 complex subunit mu-2 isoform X2"
                     /protein_id="XP_032474255.1"
                     /db_xref="GeneID:116746728"
                     /translation="MIHSLFLINSAGDIFLEKHWKSVVSRSVCDYFFEAQERATEAEN
                     VPPVISTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQVLEEMLDNGFP
                     LATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY
                     FDVIEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRLLDDVSFHPCVR
                     FKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHNISFRDSSSLGRFEITVG
                     PKQTMGKSIEGVTVSSQMPRGVLSMNLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSL
                     KGTVSLQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAG
                     KFQVRT"
     misc_feature    220..576
                     /gene="AP3M2"
                     /note="AP-3 complex subunit mu N-terminal domain; Region:
                     AP3_Mu_N; cd14837"
                     /db_xref="CDD:341441"
     misc_feature    order(265..267,274..276,349..354,376..378,382..384,
                     388..390,424..432,436..444,451..453,463..465,484..486,
                     493..498,502..510,514..525,550..552,556..561)
                     /gene="AP3M2"
                     /note="putative AP-3 beta interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:341441"
     misc_feature    646..1407
                     /gene="AP3M2"
                     /note="C-terminal domain of medium Mu3B subunit in
                     neuron-specific adaptor protein (AP) complex AP-3; Region:
                     AP-3_Mu3B_Cterm; cd09261"
                     /db_xref="CDD:211372"
     misc_feature    order(691..699,778..780,1069..1071,1285..1287,1291..1293,
                     1318..1320,1360..1371,1375..1377)
                     /gene="AP3M2"
                     /note="putative signal peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:211372"
ORIGIN      
        1 cggcggccgg cgggcgcggg ggggggcctg ggggcggggc ctgcccgcgc ggccgaacgg
       61 tgggcgctgc gaagaacaag tagggaattc tagagagtga tacttcgggc tcctgcagta
      121 gcggaagact tgagtctcgt cctgaaagag ttgagcattt gcagaggctg tcggacggaa
      181 aaagactttc atctctcact gacagcctcc accatgattc acagcctttt cttgatcaac
      241 tccgctggag atattttcct ggagaaacac tggaagagtg tggtcagccg ttctgtttgc
      301 gattactttt tcgaggcaca agagcgagca actgaggctg aaaatgttcc tccagttatc
      361 tccacccctc accactatct cctaagtgtt taccgtcaca agatcttttt tgtggctgtg
      421 atccagacgg aggtgccacc tctgtttgtc attgagttcc ttcaccgagt agtggacacg
      481 tttcaggtat tggaagagat gcttgacaac gggtttccat tggctaccga gtcgaacatc
      541 ctcaaagaac tgataaagcc gcccactatc cttcgaaccg ttgtcaacac catcacagga
      601 agcaccaatg tgggtgacca gcttcccacc gggcagctgt ccgtggtgcc ttggcgacgg
      661 actggggtga aatacaccaa caatgaggcc tattttgatg tgattgaaga gattgatgcc
      721 atcattgata aatcagggtc cacagtcact gccgagatcc agggtgttat cgatgcctgc
      781 gtcaagctga ccggaatgcc cgaccttacg ctttccttca tgaaccccag gctgctggat
      841 gatgtcagct tccacccctg cgtccgcttc aagcgctggg agtccgagcg catcctctcc
      901 ttcatccctc ccgacggcaa cttccgcctg ctctcgtacc acgtcagtgc acagaacctg
      961 gtggcgattc cagtttatgt caaacataac atcagcttcc gggacagtag ttctcttggc
     1021 cgctttgaaa taacggtggg ccctaagcag actatgggga agagcatcga gggggtgacg
     1081 gtcagcagcc agatgcccag aggcgtcctg agcatgaacc tcacgccgtc tcagggcacg
     1141 cacacgtttg acccggtcac caagatgctg tcttgggatg taggaaaaat aaatccccaa
     1201 aagctcccca gtttgaaggg gaccgtgagt cttcaggctg gagcttccaa acccgatgag
     1261 aaccccacga ttaacctgca gtttaagatc cagcagctgg ccatttctgg actcaaagtg
     1321 aatcgtctgg atatgtatgg agagaagtac aaacccttta agggcataaa atacatgacc
     1381 aaagctggca agttccaagt tcgaacctga agggagagtt ctgcaaagag aacagtcgtg
     1441 aacacttttt cattgcttac ttgtctaaaa gtaaaaactg tcagccctct cctaggtcac
     1501 tgcccactct ggaccacctg ctcctgtttt cccgtagcta cagtgccccg gagctaatga
     1561 agggaggccg ggccgccagg gaggcctgcg cagaacccac acaccagcgg caccaagtca
     1621 gttctcaaag cagaggcgtg cgatgcaggg ggaggtactt gatgccgtat gtaactactt
     1681 gtgacatggt taccacagga aaagaccagc atttgttact cgcttggctt taattatctg
     1741 aagctaagga aaggcgtctt tagtttttgg gtttttttaa aatttattta ttttattttt
     1801 agttattttt ggctgcgttg ggtctttgtt gctgcgcgcg ggctttctct agttgcggcg
     1861 agcgggggct actcttcatt acaatgcagg ggattctcac tgcagtggct tctcttgttg
     1921 tggtgcacga gctctaggca cacgcgggct tcagtagttg tggctcgcgg gctctgtagt
     1981 tgtggctcgc gggctctaga gcgcaggctc agtagttgtg gtgcacgggc ttagttgccc
     2041 tgcggcatgt gggatcttcc cacatcagca cttgaaccca tgtcccctgc attggcaggc
     2101 ggattcttaa ccaccgcgtc accagggaag tcctgttttt gtatttcaag ctgggaagaa
     2161 agattagaaa gagagagcaa gcttggaaga gaaggaccgt tagccaagga agggccagag
     2221 aaggctctgt tctcggggca gcgtgaagca tacgtgcaca ccgcacactg aaatgaggaa
     2281 ggtgggagga gctgtccagc tccacctgca gggcggctgg gatgaacaga gttgagtgag
     2341 tttctttttg acccttccgc tttcatacaa acataaacat ttgtacttct ggaaatgcac
     2401 tggaaacttc ttaaattcga gtgcactgtt gacatggaaa ccccagcaga atcagatttt
     2461 cccttaaaga ctacgatgct ctccgaccgg ttttccaata ctgaccgctg catgcctcca
     2521 gcacgtggcc tggcatcttc agcgaggatg agctgccctc ttccaggggg tgttgcctga
     2581 aacgcctctt tccctaaccc cccaacggct ccactcactt cactctacag aactcctgtt
     2641 ccccgaggag cgcttcagag aagccaatcc catcacccct agggcagcag gttgtgtgtc
     2701 atagtatcgg agtgtagatg gccccctcgt gccacctctg tgacccagtg gttccttgtt
     2761 catgtctgtc agtgctgccc tggtgctgca gtccgacctt cccgtctgca gcttttccag
     2821 ttgtgaccct aagtgagaag gatgctgacc accgagggca cggccagtcc tgggagctgc
     2881 ccagtaaagt tatttcctcg gagtctccac tatataatgt gttcattaac aatgtatatc
     2941 gaccagtcgg tttttgtttt aagacaaaaa aatctcctga atcgttgaat aaaactgatg
     3001 ttgtaggaag atgggccgtg ttgatcctgt gtagcctggt ttaagaaaca cgggcaactg
     3061 aaggcagacc tcaggtgttc ccagcaggga ctttttactc tagtttaata cgcccattac
     3121 ccactgaaat atttatagaa aagacaggtt tttaaaatta tacctttagg agcgatactg
     3181 caccctgctt cgtgcagggg gaaaaatgaa gaccttgtac tctgcaaacc ctgtgttttt
     3241 tctctaaaac cctgtttcca aatacttcag caattgtttt gctctagttt tctcttccta
     3301 cttcctggac ttgtttttgt tgcagaatac tgttgcttta tggttttcct ctggggtcaa
     3361 ctgtgctggg gacagacagc acatgtgtct catactccat cactccagaa tttgtcctgg
     3421 attcccaggt cccatacaca cctgccatgg aagggagacg cctctgcctg tggattccag
     3481 aataccggag ctgcttctcc cgagggctct ggaggatttc agggtttcct cggtcatagg
     3541 aaacaaccga tgttggtccc tgaatattct taggtttgta agtccagctg tccctccagg
     3601 gcagctcatc ctaatttcaa gggaagaact taaggagaaa taaagcaccg gggctgtggg
     3661 aggcacccct gggctgcaga cccctggcca cccccttcag ccggtggtgt gttagcatag
     3721 gtggggccgg gcgcctctgc cgaaccgctc ggttccacac gtgtttaacg tgcagaagca
     3781 cctgctgtgt ttaaatgtta ataaagttga gtgttaacag tc
//
LOCUS       XM_032618365            4809 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus heparan-alpha-glucosaminide
            N-acetyltransferase (HGSNAT), mRNA.
ACCESSION   XM_032618365
VERSION     XM_032618365.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4809
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4809
                     /gene="HGSNAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 30 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746730"
     CDS             83..1963
                     /gene="HGSNAT"
                     /codon_start=1
                     /product="heparan-alpha-glucosaminide N-acetyltransferase"
                     /protein_id="XP_032474256.1"
                     /db_xref="GeneID:116746730"
                     /translation="MSGTGAAGRALAALLLAASVLSAALLAPGSSPTPDLGKKRPLEL
                     KMDQALLLIHNELPGTNLTIYWNFDCCYHCLLQVLVDVSQSRKPGEPSIEAVAVSTQH
                     GSILQLNDTAAEKQVCRLEYKFGEFGNYSLFVKHTHDGVSEIACDLVVNEKPVDSNLP
                     VSIAFLVGLVLIIVVSFLRFALSLEDFRDWISKAINSQETDGLINSELGSPSRAGDPP
                     PEAWRQSAAPLRLRSVDTFRGIALTLMVFVNYGGGRYWYFKHASWNGLTVADLVFPWF
                     VFIMGSSIFLSMTSVLQRGCSKFRLLGKIAWRSFLLICIGIVIVNPNYCLGPLSWEKT
                     RIPGVLQRLGGTYFVVAVLELLFAKPVPEICTSERSCFSLLDITSSWPQWLFILMLEG
                     VWLALTFFLPVPGCPTGYLGPGGLGDWGKYPNCTGGAAGYIDRLLLGDHHLYQHPSSA
                     VLYHTEVAYDPEGILGTINSIVMAFLGVQAGKILLYYKDQTKGILIRFATWGCFLGFI
                     SVALTKASENEGFIPVNKNLWSISYVTTLSSFAFFILLVLYPVVDVKGLWTGTPFFYP
                     GMNSILVYVGHEVFASYFPFQWRLGNNQSHREHLVQNIVATALWVLIAYVLYKKKVFW
                     KI"
     misc_feature    770..1960
                     /gene="HGSNAT"
                     /note="Predicted acyltransferase, DUF1624 domain [General
                     function prediction only]; Region: COG4299"
                     /db_xref="CDD:443440"
ORIGIN      
        1 gggctcgcgg ccgtgtgcgg ccgagcagcg cgagtcccgg gagcgcggcg gcggcggcgg
       61 cggcgcgggg gcggcgggcg gaatgagcgg gacgggggcc gcgggccggg cgctggccgc
      121 gctgctgctg gccgcgtccg tgctgagcgc cgcgctgctg gcccccggca gctccccgac
      181 gccagactta ggaaaaaaaa ggcccttgga gctgaagatg gaccaggctt tgctgctcat
      241 ccataatgaa ctgcctggga caaacttgac catctactgg aatttcgatt gctgttatca
      301 ttgcctgctc caggtcctgg tcgacgtctc ccagagcagg aaacccgggg agcccagcat
      361 tgaggctgtg gctgtgagca cccagcacgg atccatcctg cagcttaatg acactgcggc
      421 ggagaagcaa gtttgtaggc tggaatacaa atttggggaa tttggaaact attctctctt
      481 cgtaaagcac acccacgatg gagtcagtga aattgcatgt gacctggtcg ttaatgagaa
      541 gccagttgac agtaaccttc ctgtgagtat cgcattcctt gtcggcctgg tgctcatcat
      601 tgtggtgtcc tttctaaggt ttgcgctgag cttggaagac tttcgtgatt ggatttctaa
      661 agccataaat tctcaggaaa cggatggcct catcaattct gagctggggt ctccgagcag
      721 ggcgggcgac cccccaccag aggcctggcg tcagtcggcg gcccccctgc gcctccgcag
      781 cgtggacacg ttccgcggga tcgctctcac cctcatggtc tttgtgaact acggaggtgg
      841 gagatactgg tacttcaagc acgcgagttg gaacggactg acggtggctg accttgtgtt
      901 cccgtggttt gtgtttatta tgggatcttc gatctttctg tcaatgactt ccgttctgca
      961 gcggggatgt tcaaaattca gattgctggg gaaaatcgcg tggaggagtt tcctgttaat
     1021 ctgtatagga attgtcattg tgaaccccaa ttattgcctt ggtccactgt cctgggagaa
     1081 gacgcgcatc cccggtgtgc tccagcggct cgggggcacc tactttgtgg tcgccgtgtt
     1141 ggagctgctc tttgccaagc ccgtgcctga gatctgcacc tcggagagaa gctgcttttc
     1201 tctgctggac atcacatcca gctggcccca gtggctcttc atcctgatgc tggaaggtgt
     1261 ttggctggcc ttgaccttct tcttacctgt tcccggatgc cctaccggct atctgggccc
     1321 cgggggcctc ggagattggg gcaagtaccc gaattgcacg gggggcgctg ccggctacat
     1381 tgaccgcctg ctcctgggag atcatcacct ttaccagcat ccgtcctcgg ctgtgcttta
     1441 tcacaccgag gtggcctacg acccagaagg catcctgggg accatcaact ccatcgtgat
     1501 ggcattttta ggagttcagg cagggaaaat actcctgtat tacaaggatc agactaaagg
     1561 catcctgatc agattcgcta cctggggttg tttccttggg tttatttctg ttgctttgac
     1621 aaaggcttcc gaaaatgaag gctttattcc agtaaacaaa aacctctggt ccatctccta
     1681 tgtcaccacg ctgagctcct tcgccttctt catccttctg gtcctgtacc ccgttgtgga
     1741 tgtgaagggg ctgtggacgg gaaccccgtt cttctaccct ggaatgaact cgatcttggt
     1801 gtacgtgggc cacgaggtct tcgccagcta cttccccttc cagtggaggc tggggaacaa
     1861 ccagtcacac agggagcatc tcgttcagaa catagtcgcc actgcactct gggtgctcat
     1921 cgcttacgtt ctctacaaga agaaggtgtt ttggaaaatc tgaggcccca gctgagatgt
     1981 gttgctagca gacgacaggg cctggggcac cattaaaagg agccattcgt tataaaactg
     2041 catatttcca ggttattggg ggagatgcgg acgtgctcag gctggttgat tatccgacgt
     2101 ggctcatctg actctgtata cgtgagactc agacatctga aacgtaattg tcttttctct
     2161 ccatcttctg tagaaatgga tgcctttgca acttcactct aaggatttct cctctaattt
     2221 ttcacaaggg agttaaccag gccattttgc ttctgtgacc acctaaggtc tgaccttact
     2281 gatctttcct gcagactgtc tttctgtgct ggtccacgcc gaccaagata ccaccgtttc
     2341 tgttgtgtct gactgtgaag ctcattgggt atagtgtgtg gtaacatagt ctaacatatt
     2401 tcagttacgt acagtttagt atttcaagaa attccaagta atctcctttc agatctgtaa
     2461 gtaactggtg ggtccaaaaa aatgcctttc tatcagaagc cattttctcc ttttcctcat
     2521 ttgaaaaaca agtgaaacag tagatgtgtt attcccagcc acccttgcat atacctatct
     2581 ctctacccac ccacctcctg tctgcctgtc tgtctttctg tctgtgtgtc tgggtggtag
     2641 ctggtccccc aggccatcct ctgactctag gaagagagag aagctcatgg tctcggccgg
     2701 gctcctgctg tggcatcctt gccgggttag acgcaaggca ggtcccctca cagcgaggga
     2761 cacggtgctg cccgctcagc tcccctccag ctctgagatc cagtggggtg ggagacatca
     2821 gtggcatttc tgaaatcctt agaaaaataa ttttgttaca gaaaactctt caaaataaat
     2881 gagaagttta aaaaactctc atcagagtaa ctcttttcag aatgaccctc cacagtggag
     2941 gcagctttcc tgcttggaat caccaaagtg cagaattgtt tctcaggagt gaaggaggag
     3001 aacacagggg accagcaccc ccattttgca gcatcctact tagggatttc ctgtgagaat
     3061 tccacattga aggaagatgt ggcaataggt tgtactttgg agcatccttg catggtgaga
     3121 cggggtcact tcgacctgtc ccctgatgtc agctgtcacc ctgcatggat agtgagtttc
     3181 cagctacccc gtctctaccc gaactctcat cccaacttgt gcctgtccac ctgggtgtcc
     3241 gccagcattc aggcttcccc ctccaccctc tcttctcaaa cacaagcctt tccggcttgg
     3301 attgtcccag ctctgtgaac aggtgaccct ctgtctctcg gataaaactg tctttcaccc
     3361 gctttacctc ctctgtcccc ctttcccatg tttagtcatt gccaagtcgt ctcagttctc
     3421 acggtcactg cctgtaactc ttgcccagat gccaagagga atcatttttc aactggcctc
     3481 cttccctcag tccctccttc tgtaaagcca ctgtccactg ccccagatta cacttcataa
     3541 acagagctga ctcacatcac ctccttataa gcacttacac tgaagttgga acagctttgc
     3601 tggcaggcag agccgtcctc cgttgagccc agcacacctt ctcggctatg tccagccccc
     3661 tggacccagc ctgctgcttg cagccccatc agctgcctcc tgcccctgag tttgattagt
     3721 ccccttagtt ttctcccatc gacccttgac ctatcacatt cgccccctgc ttctaaggca
     3781 tcttctctaa tcttagtctt gtccctaagt aatatttcct tgctctgagt tctcgtaata
     3841 tctgattggg ctcaatcttg tggcacttgt tgctctctgc cttgtatgac agtgatttgg
     3901 gtacatgacc agtttcccac gctggcctgt gagcttgtgg aggataaggc acattcttca
     3961 tgcacgccac agtggcccgt gcagagcagg cgctaaataa acttgtgaaa gcaaaatggg
     4021 gtggtgggtt tgcttttcat aggtaaaatt tcgcgtgtat ctggagctaa tgtgtgtgtg
     4081 tgcgcacgcg tgcgcgtggg gagagccgtc atctttgagg aaacccctct tttgcggtgc
     4141 acatttgtgg gtggtcatgg ctctgtcatc ccgagtctca gcaggtaagg ctgagctggg
     4201 cctctccaga agcagttttc aagtcggggt gcccatcggt taggatgtct tgagccggat
     4261 ggagcaggaa ctccccatcc agctgggtta taagcagaac atcgcacata agtggtccca
     4321 cggcgggtgg gctcctgctc aggtcgcttc acggctgaga tgcccacccc actgccatca
     4381 cgacagacac acacactcgg ccagcgccac acgggaggga gtgggcatcc cctctgtgcc
     4441 tcataacgtt attggccgga aaacgctccc caaactgtgc aagaccagcc gtgacgaggg
     4501 agcttgggct ggcctggccc agggctgagc ggggacagct ggcatctccc tggggagggc
     4561 agggagtgtg cagggtgagc ggtggagtgg gacatggcag tggggacaac cgtgtgcagc
     4621 ggtggctgca gaaaacccat gtcacagtgc atcctgtggg gaagttgggt ggagtccttg
     4681 tgtaacaaag cagaaagtac tgtcctggag tgggaatgta ataatttgac attgtttatt
     4741 cattttttgc acttatattc ctaattccgc tttataatta ggtgaataaa ctgctgctct
     4801 tacacttga
//
LOCUS       XM_032618366            3967 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA synthetase long chain family
            member 1 (ACSL1), transcript variant X1, mRNA.
ACCESSION   XM_032618366
VERSION     XM_032618366.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3967
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3967
                     /gene="ACSL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 long SRA reads, 38 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746731"
     CDS             203..2299
                     /gene="ACSL1"
                     /codon_start=1
                     /product="long-chain-fatty-acid--CoA ligase 1 isoform X1"
                     /protein_id="XP_032474257.1"
                     /db_xref="GeneID:116746731"
                     /translation="MQAHELSQFFRMPEMVDFRQYVRTLPTNTLMGFGAFAALTTFWY
                     ATRPRALKPPCDLAMQSVQVAGSDGARRSVLLDSDEPLVYFYDDVRTLYEGFQRGVQL
                     SNNDPCLGSRKPDQPYEWLSYKQVAEMSECVGSALLHKGFKAAPDQFIGIFSQNRPEW
                     VIIEQGCFTYSMVIVPLYDTLGTEAITYIINKAELSLVFVDKPGKAILLLEGVENKLT
                     PSLKTIVLMDSYGSNLSDRGKKCGVELISLKAMEDLGRANRRKPKPPAPEDVAIVCFT
                     SGTTGNPKGALITHRNVVSDCSAFIKMTEGAFVPSSDDTLISFLPLAHMFEKVVEFLM
                     LSHGAKIGFFQGDIRLLMDDLKTLQPTVFPVVPRLLNRMFDRIFAQANTTLKRWLLDF
                     ASRRKEAELRSGIIRNNSLWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRAAL
                     GCQFYEGYGQTECTAGCCLTVPGDWTAGHVGAPMPCNIIKLVDVEEMNYMAAKGEGEV
                     CVKGANVFQGYLKDPTNTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGE
                     YIAPEKIENIYQQSEPVAQVFVHGESLQAFLIAIVVPDIETLGPWARKRGFEGSFEEL
                     CRSKGVQKAVLEDMVILGRDAGLKPFEQVKGISLHPELFSVDNGLLTPTMKAKRPELR
                     NYFRSQIDELYSTIKI"
     misc_feature    548..2284
                     /gene="ACSL1"
                     /note="Eukaryotic long-chain fatty acid CoA synthetase
                     (LC-FACS); Region: LC-FACS_euk; cd05927"
                     /db_xref="CDD:341250"
     misc_feature    order(1019..1021,1028..1045,1049..1054)
                     /gene="ACSL1"
                     /note="acyl-activating enzyme (AAE) consensus motif; other
                     site"
                     /db_xref="CDD:341250"
     misc_feature    order(1028..1030,1379..1384,1568..1585,1820..1822,
                     1856..1858,1865..1867,1901..1903,2219..2221)
                     /gene="ACSL1"
                     /note="putative AMP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:341250"
     misc_feature    order(1028..1030,1160..1165,1298..1300,1304..1309,
                     1316..1318,1379..1384,1568..1585,1820..1822,1856..1858,
                     1865..1867,1892..1903,2150..2152)
                     /gene="ACSL1"
                     /note="putative active site [active]"
                     /db_xref="CDD:341250"
     misc_feature    order(1160..1162,1304..1309,1316..1318,1379..1381,
                     1892..1900,2144..2146,2150..2152)
                     /gene="ACSL1"
                     /note="putative CoA binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:341250"
ORIGIN      
        1 ggcgggcgcg gcactagcac ccgccgcagc ctggctccaa ggcggcgggg cctggggcgt
       61 agccagccac gcattggcgg cggccccctt aaataggatc cgaagtcggc ttggggtcag
      121 cagtggtttg cggtgaccgc cggcggtgca ctgccgagcc tgtggaggag atatcggtgt
      181 agggtgctac caacccagga cgatgcaagc ccacgagctg tcccagttct ttcggatgcc
      241 agagatggtt gacttccggc agtacgtgcg cacccttcca accaacacac tcatgggctt
      301 cggtgcgttc gcggcgctca ccaccttctg gtatgccacg cggccgcggg ccctgaagcc
      361 accgtgcgac ctggccatgc agtcggtgca ggtggcgggc agcgatggtg cccggagatc
      421 cgtgctcctg gacagtgacg agcccttggt gtatttctat gatgacgtca gaacgctata
      481 tgaaggtttc cagaggggcg tacagctgtc aaataatgac ccatgtttag gttctaggaa
      541 accagaccaa ccctatgaat ggctttcata caaacaggtt gcagaaatgt cagagtgtgt
      601 gggctcggcg ctgctccaca agggcttcaa ggcggcccca gatcagttca tcggcatctt
      661 ttctcagaac agacctgagt gggtgatcat tgaacaggga tgctttactt attcgatggt
      721 gatcgttccc ctctacgata ccctcggaac agaagcaatc acctacatca tcaacaaagc
      781 tgaactctct ctggtttttg tggacaagcc agggaaggcc atcctcttat tagaaggtgt
      841 agaaaataaa ttaacaccat cccttaaaac tatcgttctc atggactcct atggcagtaa
      901 tctgtcggac cgaggcaaga agtgcggggt ggagctcatc agcttgaagg cgatggagga
      961 cctgggaaga gccaacagac ggaagcccaa gcctccagca cctgaagatg ttgcaatagt
     1021 ttgcttcaca agtggcacta caggcaaccc caaaggagca ctgatcaccc atcgaaatgt
     1081 agtgagcgat tgttcagcat ttattaaaat gacagagggt gcattcgttc cttcctcaga
     1141 tgatactttg atctctttct tgcctctcgc ccacatgttt gagaaagttg tagagttttt
     1201 gatgctgagt cacggagcta aaataggatt tttccaagga gacatcaggc tgcttatgga
     1261 tgatctcaag acccttcaac ccaccgtctt ccctgtggtc cccagactgc tgaaccggat
     1321 gtttgacaga atttttgctc aggcaaacac cacgctgaag cgatggctgt tggactttgc
     1381 ctccaggagg aaagaagccg agcttcgcag tggcatcatt agaaacaaca gcctgtggga
     1441 taagttgatc ttccacaaaa tacagtcgag cctgggagga aaagtacggc tgatgatcac
     1501 aggagcagcg cccgtgtccg ccaccgtgct gaccttcctg agagccgcgc tgggctgcca
     1561 gttctacgaa ggctatggac agaccgagtg cactgccggg tgctgcctga ctgtgcctgg
     1621 ggactggact gcaggccatg ttggtgcccc aatgccttgc aacattataa agcttgtcga
     1681 tgtggaagaa atgaattaca tggctgccaa gggcgagggc gaggtgtgtg tgaaaggggc
     1741 taatgtattt caaggctact taaaggaccc aacaaacaca gcagaagctc tggataaaga
     1801 cggctggttg cacacagggg acattggaaa gtggttacca aatggcacct tgaagatcat
     1861 cgacaggaaa aagcacatct ttaaactggc acaaggagag tacatagctc cggagaagat
     1921 tgaaaacatc taccagcaaa gtgaacctgt cgctcaggtg tttgtccacg gagagagctt
     1981 gcaggcattt ctcatagcaa ttgtggtacc agacattgag acgctaggtc cctgggcccg
     2041 gaagcgaggc tttgaaggct cctttgaaga gctgtgcaga agcaagggtg tccaaaaagc
     2101 tgttctggaa gacatggtga tacttgggag ggatgctggc ctaaaaccat ttgaacaggt
     2161 caaaggtatt agtctccacc ctgaattatt ctctgtcgac aacggccttc tgaccccaac
     2221 gatgaaggct aaaagaccag agcttcggaa ttatttcagg tcacagatcg atgaactcta
     2281 ttccaccatc aaaatctaat gcgaggaagg aagttgggaa gaggccgcat gcctccgcgg
     2341 tcttctcctg cccgtggcct cagtgggtag ttttgacaac agcaagtagg gaaggagcgt
     2401 ctttgtctgc ctcgtgcgtt cagattctca tcacaggaag cttagaggga gtggaacact
     2461 gccttgtggt cacgtcgcat tgcagaccat gttcacggtg atacataatt tccaaaatga
     2521 gccttaaaat aattgtaagg gggaaactat aaatgtgcta agttatttac gacttcctca
     2581 gtttaaaaag agggtgaaaa cttgtctccc ttttttgcta accaagtggt taggactttg
     2641 ctatttctga gatgtctgct acttgctgca aattctgcag gtgtctgctg ctctgaagag
     2701 taccgtgcac tggagggagc cgtcccttac aaacaagaac tgtcccagct gcaggaggtt
     2761 gcacgtggac cagaggtttt ttttttaatc cctgccactg tcccctcccc gtctcatgtg
     2821 acccttctga ttaacccctg tcactcctgt tggagcagag gatggaccta actcagaaca
     2881 acgcaggtat gggtggatgg ccgctcacca gagcaggtgg attctggcgt ccacagagca
     2941 gaatattcgc cgaccctctt ctcgagaccc gattccctcc ctccatccct tcccaggggt
     3001 tattaaaaaa atctgcctta gactctgcag tgaagacaag catttcaaca aggaaacaat
     3061 gacctggatc agccatgttc aactgtgacg cctgaagaac tgtccacttt atcttcactg
     3121 aacccgtcgc tctgtctgtg atggttttta atgtggtttt catatcagaa gagtacgttg
     3181 tgattaagtg gctttttttc cccagaataa actctcaggc aaggcatgtc tttaaaaata
     3241 ttaagggggc ttccctggtg gcgcagtggt tgagagtccg cctgccgatg caggggacgc
     3301 aggttcgtgc cccggtccgg gaggatccca catgccgcgg agcggctggg cccgtgagcc
     3361 atggccgctg agcctgcgcg tccggaacct gtgctctgca acgggagaag ccacagcagt
     3421 gagaggcccg tgtaccgcaa aaaaaaaaaa aattaaggga ctagatacac ttggctactt
     3481 attgaaatgg atggtaatta atgctcttct atcataatgc tacctgattt ctatgaaatg
     3541 tagttgacaa gccaaaattc taagacatag gaatctggaa aactcatttc ctggggttaa
     3601 cttctcaagg gatttttttt ttaagttaat ttgggtaatt aacagcattt cactttactg
     3661 caagtctttg ccacatgtga ctgaatttag ttgtcattta tatgttgaaa gcagttgttt
     3721 gtggatatgt gactacctgt attatacaag cacaacaggg tttgccctaa agagttgtcg
     3781 taataacgct atttggtagc ctagcttcat acgtgcattc ttaattgcac aagaagtcaa
     3841 taatttgtca caatgggctt ttgaatgttt gctttaagtg ttggctgttt ctatgtttta
     3901 taaaccaaaa cagaatttcc aaaaacaatg aaggaaacca aaataaatat ttctgcattt
     3961 caagtga
//
LOCUS       XM_032618368            3811 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA synthetase long chain family
            member 1 (ACSL1), transcript variant X2, mRNA.
ACCESSION   XM_032618368
VERSION     XM_032618368.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3811
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3811
                     /gene="ACSL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746731"
     CDS             227..2143
                     /gene="ACSL1"
                     /codon_start=1
                     /product="long-chain-fatty-acid--CoA ligase 1 isoform X2"
                     /protein_id="XP_032474259.1"
                     /db_xref="GeneID:116746731"
                     /translation="MQAHELSQFFRMPEMVDFRQYVRTLPTNTLMGFGAFAALTTFWY
                     ATRPRALKPPCDLAMQSVQVAVAEMSECVGSALLHKGFKAAPDQFIGIFSQNRPEWVI
                     IEQGCFTYSMVIVPLYDTLGTEAITYIINKAELSLVFVDKPGKAILLLEGVENKLTPS
                     LKTIVLMDSYGSNLSDRGKKCGVELISLKAMEDLGRANRRKPKPPAPEDVAIVCFTSG
                     TTGNPKGALITHRNVVSDCSAFIKMTEGAFVPSSDDTLISFLPLAHMFEKVVEFLMLS
                     HGAKIGFFQGDIRLLMDDLKTLQPTVFPVVPRLLNRMFDRIFAQANTTLKRWLLDFAS
                     RRKEAELRSGIIRNNSLWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRAALGC
                     QFYEGYGQTECTAGCCLTVPGDWTAGHVGAPMPCNIIKLVDVEEMNYMAAKGEGEVCV
                     KGANVFQGYLKDPTNTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYI
                     APEKIENIYQQSEPVAQVFVHGESLQAFLIAIVVPDIETLGPWARKRGFEGSFEELCR
                     SKGVQKAVLEDMVILGRDAGLKPFEQVKGISLHPELFSVDNGLLTPTMKAKRPELRNY
                     FRSQIDELYSTIKI"
     misc_feature    422..2128
                     /gene="ACSL1"
                     /note="Eukaryotic long-chain fatty acid CoA synthetase
                     (LC-FACS); Region: LC-FACS_euk; cd05927"
                     /db_xref="CDD:341250"
     misc_feature    order(863..865,872..889,893..898)
                     /gene="ACSL1"
                     /note="acyl-activating enzyme (AAE) consensus motif; other
                     site"
                     /db_xref="CDD:341250"
     misc_feature    order(872..874,1223..1228,1412..1429,1664..1666,
                     1700..1702,1709..1711,1745..1747,2063..2065)
                     /gene="ACSL1"
                     /note="putative AMP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:341250"
     misc_feature    order(872..874,1004..1009,1142..1144,1148..1153,
                     1160..1162,1223..1228,1412..1429,1664..1666,1700..1702,
                     1709..1711,1736..1747,1994..1996)
                     /gene="ACSL1"
                     /note="putative active site [active]"
                     /db_xref="CDD:341250"
     misc_feature    order(1004..1006,1148..1153,1160..1162,1223..1225,
                     1736..1744,1988..1990,1994..1996)
                     /gene="ACSL1"
                     /note="putative CoA binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:341250"
ORIGIN      
        1 gggcggggcg gggcctgagg gcggggcggg cgcggcacta gcacccgccg cagcctggct
       61 ccaaggcggc ggggcctggg gcgtagccag ccacgcattg gcggcggccc ccttaaatag
      121 gatccgaagt cggcttgggg tcagcagtgg tttgcggtga ccgccggcgg tgcactgccg
      181 agcctgtgga ggagatatcg gtgtagggtg ctaccaaccc aggacgatgc aagcccacga
      241 gctgtcccag ttctttcgga tgccagagat ggttgacttc cggcagtacg tgcgcaccct
      301 tccaaccaac acactcatgg gcttcggtgc gttcgcggcg ctcaccacct tctggtatgc
      361 cacgcggccg cgggccctga agccaccgtg cgacctggcc atgcagtcgg tgcaggtggc
      421 ggttgcagaa atgtcagagt gtgtgggctc ggcgctgctc cacaagggct tcaaggcggc
      481 cccagatcag ttcatcggca tcttttctca gaacagacct gagtgggtga tcattgaaca
      541 gggatgcttt acttattcga tggtgatcgt tcccctctac gataccctcg gaacagaagc
      601 aatcacctac atcatcaaca aagctgaact ctctctggtt tttgtggaca agccagggaa
      661 ggccatcctc ttattagaag gtgtagaaaa taaattaaca ccatccctta aaactatcgt
      721 tctcatggac tcctatggca gtaatctgtc ggaccgaggc aagaagtgcg gggtggagct
      781 catcagcttg aaggcgatgg aggacctggg aagagccaac agacggaagc ccaagcctcc
      841 agcacctgaa gatgttgcaa tagtttgctt cacaagtggc actacaggca accccaaagg
      901 agcactgatc acccatcgaa atgtagtgag cgattgttca gcatttatta aaatgacaga
      961 gggtgcattc gttccttcct cagatgatac tttgatctct ttcttgcctc tcgcccacat
     1021 gtttgagaaa gttgtagagt ttttgatgct gagtcacgga gctaaaatag gatttttcca
     1081 aggagacatc aggctgctta tggatgatct caagaccctt caacccaccg tcttccctgt
     1141 ggtccccaga ctgctgaacc ggatgtttga cagaattttt gctcaggcaa acaccacgct
     1201 gaagcgatgg ctgttggact ttgcctccag gaggaaagaa gccgagcttc gcagtggcat
     1261 cattagaaac aacagcctgt gggataagtt gatcttccac aaaatacagt cgagcctggg
     1321 aggaaaagta cggctgatga tcacaggagc agcgcccgtg tccgccaccg tgctgacctt
     1381 cctgagagcc gcgctgggct gccagttcta cgaaggctat ggacagaccg agtgcactgc
     1441 cgggtgctgc ctgactgtgc ctggggactg gactgcaggc catgttggtg ccccaatgcc
     1501 ttgcaacatt ataaagcttg tcgatgtgga agaaatgaat tacatggctg ccaagggcga
     1561 gggcgaggtg tgtgtgaaag gggctaatgt atttcaaggc tacttaaagg acccaacaaa
     1621 cacagcagaa gctctggata aagacggctg gttgcacaca ggggacattg gaaagtggtt
     1681 accaaatggc accttgaaga tcatcgacag gaaaaagcac atctttaaac tggcacaagg
     1741 agagtacata gctccggaga agattgaaaa catctaccag caaagtgaac ctgtcgctca
     1801 ggtgtttgtc cacggagaga gcttgcaggc atttctcata gcaattgtgg taccagacat
     1861 tgagacgcta ggtccctggg cccggaagcg aggctttgaa ggctcctttg aagagctgtg
     1921 cagaagcaag ggtgtccaaa aagctgttct ggaagacatg gtgatacttg ggagggatgc
     1981 tggcctaaaa ccatttgaac aggtcaaagg tattagtctc caccctgaat tattctctgt
     2041 cgacaacggc cttctgaccc caacgatgaa ggctaaaaga ccagagcttc ggaattattt
     2101 caggtcacag atcgatgaac tctattccac catcaaaatc taatgcgagg aaggaagttg
     2161 ggaagaggcc gcatgcctcc gcggtcttct cctgcccgtg gcctcagtgg gtagttttga
     2221 caacagcaag tagggaagga gcgtctttgt ctgcctcgtg cgttcagatt ctcatcacag
     2281 gaagcttaga gggagtggaa cactgccttg tggtcacgtc gcattgcaga ccatgttcac
     2341 ggtgatacat aatttccaaa atgagcctta aaataattgt aagggggaaa ctataaatgt
     2401 gctaagttat ttacgacttc ctcagtttaa aaagagggtg aaaacttgtc tccctttttt
     2461 gctaaccaag tggttaggac tttgctattt ctgagatgtc tgctacttgc tgcaaattct
     2521 gcaggtgtct gctgctctga agagtaccgt gcactggagg gagccgtccc ttacaaacaa
     2581 gaactgtccc agctgcagga ggttgcacgt ggaccagagg tttttttttt aatccctgcc
     2641 actgtcccct ccccgtctca tgtgaccctt ctgattaacc cctgtcactc ctgttggagc
     2701 agaggatgga cctaactcag aacaacgcag gtatgggtgg atggccgctc accagagcag
     2761 gtggattctg gcgtccacag agcagaatat tcgccgaccc tcttctcgag acccgattcc
     2821 ctccctccat cccttcccag gggttattaa aaaaatctgc cttagactct gcagtgaaga
     2881 caagcatttc aacaaggaaa caatgacctg gatcagccat gttcaactgt gacgcctgaa
     2941 gaactgtcca ctttatcttc actgaacccg tcgctctgtc tgtgatggtt tttaatgtgg
     3001 ttttcatatc agaagagtac gttgtgatta agtggctttt tttccccaga ataaactctc
     3061 aggcaaggca tgtctttaaa aatattaagg gggcttccct ggtggcgcag tggttgagag
     3121 tccgcctgcc gatgcagggg acgcaggttc gtgccccggt ccgggaggat cccacatgcc
     3181 gcggagcggc tgggcccgtg agccatggcc gctgagcctg cgcgtccgga acctgtgctc
     3241 tgcaacggga gaagccacag cagtgagagg cccgtgtacc gcaaaaaaaa aaaaaattaa
     3301 gggactagat acacttggct acttattgaa atggatggta attaatgctc ttctatcata
     3361 atgctacctg atttctatga aatgtagttg acaagccaaa attctaagac ataggaatct
     3421 ggaaaactca tttcctgggg ttaacttctc aagggatttt ttttttaagt taatttgggt
     3481 aattaacagc atttcacttt actgcaagtc tttgccacat gtgactgaat ttagttgtca
     3541 tttatatgtt gaaagcagtt gtttgtggat atgtgactac ctgtattata caagcacaac
     3601 agggtttgcc ctaaagagtt gtcgtaataa cgctatttgg tagcctagct tcatacgtgc
     3661 attcttaatt gcacaagaag tcaataattt gtcacaatgg gcttttgaat gtttgcttta
     3721 agtgttggct gtttctatgt tttataaacc aaaacagaat ttccaaaaac aatgaaggaa
     3781 accaaaataa atatttctgc atttcaagtg a
//
LOCUS       XM_032618369            3685 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA synthetase long chain family
            member 1 (ACSL1), transcript variant X3, mRNA.
ACCESSION   XM_032618369
VERSION     XM_032618369.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3685
                     /gene="ACSL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746731"
     CDS             203..2017
                     /gene="ACSL1"
                     /codon_start=1
                     /product="long-chain-fatty-acid--CoA ligase 1 isoform X3"
                     /protein_id="XP_032474260.1"
                     /db_xref="GeneID:116746731"
                     /translation="MQAHELSQFFRMPEMVDFRQYVRTLPTNTLMGFGAFAALTTFWY
                     ATRPRALKPPCDLAMQSVQVAWVIIEQGCFTYSMVIVPLYDTLGTEAITYIINKAELS
                     LVFVDKPGKAILLLEGVENKLTPSLKTIVLMDSYGSNLSDRGKKCGVELISLKAMEDL
                     GRANRRKPKPPAPEDVAIVCFTSGTTGNPKGALITHRNVVSDCSAFIKMTEGAFVPSS
                     DDTLISFLPLAHMFEKVVEFLMLSHGAKIGFFQGDIRLLMDDLKTLQPTVFPVVPRLL
                     NRMFDRIFAQANTTLKRWLLDFASRRKEAELRSGIIRNNSLWDKLIFHKIQSSLGGKV
                     RLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTVPGDWTAGHVGAPMPC
                     NIIKLVDVEEMNYMAAKGEGEVCVKGANVFQGYLKDPTNTAEALDKDGWLHTGDIGKW
                     LPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYQQSEPVAQVFVHGESLQAFLIAIVV
                     PDIETLGPWARKRGFEGSFEELCRSKGVQKAVLEDMVILGRDAGLKPFEQVKGISLHP
                     ELFSVDNGLLTPTMKAKRPELRNYFRSQIDELYSTIKI"
     misc_feature    398..2002
                     /gene="ACSL1"
                     /note="Eukaryotic long-chain fatty acid CoA synthetase
                     (LC-FACS); Region: LC-FACS_euk; cd05927"
                     /db_xref="CDD:341250"
     misc_feature    order(737..739,746..763,767..772)
                     /gene="ACSL1"
                     /note="acyl-activating enzyme (AAE) consensus motif; other
                     site"
                     /db_xref="CDD:341250"
     misc_feature    order(746..748,1097..1102,1286..1303,1538..1540,
                     1574..1576,1583..1585,1619..1621,1937..1939)
                     /gene="ACSL1"
                     /note="putative AMP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:341250"
     misc_feature    order(746..748,878..883,1016..1018,1022..1027,1034..1036,
                     1097..1102,1286..1303,1538..1540,1574..1576,1583..1585,
                     1610..1621,1868..1870)
                     /gene="ACSL1"
                     /note="putative active site [active]"
                     /db_xref="CDD:341250"
     misc_feature    order(878..880,1022..1027,1034..1036,1097..1099,
                     1610..1618,1862..1864,1868..1870)
                     /gene="ACSL1"
                     /note="putative CoA binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:341250"
ORIGIN      
        1 ggcgggcgcg gcactagcac ccgccgcagc ctggctccaa ggcggcgggg cctggggcgt
       61 agccagccac gcattggcgg cggccccctt aaataggatc cgaagtcggc ttggggtcag
      121 cagtggtttg cggtgaccgc cggcggtgca ctgccgagcc tgtggaggag atatcggtgt
      181 agggtgctac caacccagga cgatgcaagc ccacgagctg tcccagttct ttcggatgcc
      241 agagatggtt gacttccggc agtacgtgcg cacccttcca accaacacac tcatgggctt
      301 cggtgcgttc gcggcgctca ccaccttctg gtatgccacg cggccgcggg ccctgaagcc
      361 accgtgcgac ctggccatgc agtcggtgca ggtggcgtgg gtgatcattg aacagggatg
      421 ctttacttat tcgatggtga tcgttcccct ctacgatacc ctcggaacag aagcaatcac
      481 ctacatcatc aacaaagctg aactctctct ggtttttgtg gacaagccag ggaaggccat
      541 cctcttatta gaaggtgtag aaaataaatt aacaccatcc cttaaaacta tcgttctcat
      601 ggactcctat ggcagtaatc tgtcggaccg aggcaagaag tgcggggtgg agctcatcag
      661 cttgaaggcg atggaggacc tgggaagagc caacagacgg aagcccaagc ctccagcacc
      721 tgaagatgtt gcaatagttt gcttcacaag tggcactaca ggcaacccca aaggagcact
      781 gatcacccat cgaaatgtag tgagcgattg ttcagcattt attaaaatga cagagggtgc
      841 attcgttcct tcctcagatg atactttgat ctctttcttg cctctcgccc acatgtttga
      901 gaaagttgta gagtttttga tgctgagtca cggagctaaa ataggatttt tccaaggaga
      961 catcaggctg cttatggatg atctcaagac ccttcaaccc accgtcttcc ctgtggtccc
     1021 cagactgctg aaccggatgt ttgacagaat ttttgctcag gcaaacacca cgctgaagcg
     1081 atggctgttg gactttgcct ccaggaggaa agaagccgag cttcgcagtg gcatcattag
     1141 aaacaacagc ctgtgggata agttgatctt ccacaaaata cagtcgagcc tgggaggaaa
     1201 agtacggctg atgatcacag gagcagcgcc cgtgtccgcc accgtgctga ccttcctgag
     1261 agccgcgctg ggctgccagt tctacgaagg ctatggacag accgagtgca ctgccgggtg
     1321 ctgcctgact gtgcctgggg actggactgc aggccatgtt ggtgccccaa tgccttgcaa
     1381 cattataaag cttgtcgatg tggaagaaat gaattacatg gctgccaagg gcgagggcga
     1441 ggtgtgtgtg aaaggggcta atgtatttca aggctactta aaggacccaa caaacacagc
     1501 agaagctctg gataaagacg gctggttgca cacaggggac attggaaagt ggttaccaaa
     1561 tggcaccttg aagatcatcg acaggaaaaa gcacatcttt aaactggcac aaggagagta
     1621 catagctccg gagaagattg aaaacatcta ccagcaaagt gaacctgtcg ctcaggtgtt
     1681 tgtccacgga gagagcttgc aggcatttct catagcaatt gtggtaccag acattgagac
     1741 gctaggtccc tgggcccgga agcgaggctt tgaaggctcc tttgaagagc tgtgcagaag
     1801 caagggtgtc caaaaagctg ttctggaaga catggtgata cttgggaggg atgctggcct
     1861 aaaaccattt gaacaggtca aaggtattag tctccaccct gaattattct ctgtcgacaa
     1921 cggccttctg accccaacga tgaaggctaa aagaccagag cttcggaatt atttcaggtc
     1981 acagatcgat gaactctatt ccaccatcaa aatctaatgc gaggaaggaa gttgggaaga
     2041 ggccgcatgc ctccgcggtc ttctcctgcc cgtggcctca gtgggtagtt ttgacaacag
     2101 caagtaggga aggagcgtct ttgtctgcct cgtgcgttca gattctcatc acaggaagct
     2161 tagagggagt ggaacactgc cttgtggtca cgtcgcattg cagaccatgt tcacggtgat
     2221 acataatttc caaaatgagc cttaaaataa ttgtaagggg gaaactataa atgtgctaag
     2281 ttatttacga cttcctcagt ttaaaaagag ggtgaaaact tgtctccctt ttttgctaac
     2341 caagtggtta ggactttgct atttctgaga tgtctgctac ttgctgcaaa ttctgcaggt
     2401 gtctgctgct ctgaagagta ccgtgcactg gagggagccg tcccttacaa acaagaactg
     2461 tcccagctgc aggaggttgc acgtggacca gaggtttttt ttttaatccc tgccactgtc
     2521 ccctccccgt ctcatgtgac ccttctgatt aacccctgtc actcctgttg gagcagagga
     2581 tggacctaac tcagaacaac gcaggtatgg gtggatggcc gctcaccaga gcaggtggat
     2641 tctggcgtcc acagagcaga atattcgccg accctcttct cgagacccga ttccctccct
     2701 ccatcccttc ccaggggtta ttaaaaaaat ctgccttaga ctctgcagtg aagacaagca
     2761 tttcaacaag gaaacaatga cctggatcag ccatgttcaa ctgtgacgcc tgaagaactg
     2821 tccactttat cttcactgaa cccgtcgctc tgtctgtgat ggtttttaat gtggttttca
     2881 tatcagaaga gtacgttgtg attaagtggc tttttttccc cagaataaac tctcaggcaa
     2941 ggcatgtctt taaaaatatt aagggggctt ccctggtggc gcagtggttg agagtccgcc
     3001 tgccgatgca ggggacgcag gttcgtgccc cggtccggga ggatcccaca tgccgcggag
     3061 cggctgggcc cgtgagccat ggccgctgag cctgcgcgtc cggaacctgt gctctgcaac
     3121 gggagaagcc acagcagtga gaggcccgtg taccgcaaaa aaaaaaaaaa ttaagggact
     3181 agatacactt ggctacttat tgaaatggat ggtaattaat gctcttctat cataatgcta
     3241 cctgatttct atgaaatgta gttgacaagc caaaattcta agacatagga atctggaaaa
     3301 ctcatttcct ggggttaact tctcaaggga tttttttttt aagttaattt gggtaattaa
     3361 cagcatttca ctttactgca agtctttgcc acatgtgact gaatttagtt gtcatttata
     3421 tgttgaaagc agttgtttgt ggatatgtga ctacctgtat tatacaagca caacagggtt
     3481 tgccctaaag agttgtcgta ataacgctat ttggtagcct agcttcatac gtgcattctt
     3541 aattgcacaa gaagtcaata atttgtcaca atgggctttt gaatgtttgc tttaagtgtt
     3601 ggctgtttct atgttttata aaccaaaaca gaatttccaa aaacaatgaa ggaaaccaaa
     3661 ataaatattt ctgcatttca agtga
//
LOCUS       XM_032618370            3539 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fibroblast growth factor receptor 1
            (FGFR1), mRNA.
ACCESSION   XM_032618370
VERSION     XM_032618370.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-134               VOSU01000013.1     30299955-30300088   c
            135-313             VOSU01000013.1     30292072-30292250   c
            314-357             VOSU01000013.1     30267196-30267239   c
            358-522             VOSU01000013.1     30267030-30267194   c
            523-583             VOSU01000013.1     30266968-30267028   c
            584-667             VOSU01000013.1     30265507-30265590   c
            668-840             VOSU01000013.1     30265012-30265184   c
            841-964             VOSU01000013.1     30263281-30263404   c
            965-1155            VOSU01000013.1     30262036-30262226   c
            1156-1300           VOSU01000013.1     30259995-30260139   c
            1301-1497           VOSU01000013.1     30257793-30257989   c
            1498-1643           VOSU01000013.1     30256686-30256831   c
            1644-1765           VOSU01000013.1     30256094-30256215   c
            1766-1876           VOSU01000013.1     30255546-30255656   c
            1877-2067           VOSU01000013.1     30254838-30255028   c
            2068-2190           VOSU01000013.1     30254055-30254177   c
            2191-2261           VOSU01000013.1     30253848-30253918   c
            2262-2399           VOSU01000013.1     30253443-30253580   c
            2400-2505           VOSU01000013.1     30253142-30253247   c
            2506-3539           VOSU01000013.1     30251994-30253027   c
FEATURES             Location/Qualifiers
     source          1..3539
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3539
                     /gene="FGFR1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 mRNAs, 8 long SRA reads, 35 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746732"
     CDS             223..2682
                     /gene="FGFR1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: fibroblast growth factor
                     receptor 1"
                     /protein_id="XP_032474261.1"
                     /db_xref="GeneID:116746732"
                     /translation="MWSWKCLLFWAVLVTAALCTARPAPTLPEQAQPWGAPVEVESLL
                     VHPGDLLQLRCRLRDDVQSINWPAGRGGSWWKATATRITGEEVEVRDSVPADSGLYAC
                     VTSSPSGSDTTYFSVNVSDALPSSEDDDDDDDSSSEEKETDNTKPNPVAPYWTSPEKM
                     EKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDS
                     VVPSDKGNYTCVVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMC
                     KVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFED
                     AGEYTCLAGNSIGLSHHSAWLTVLEALEERPAVMTSPLYLEIIIYCTGAFLISCMVGS
                     VIIYKMKSGTKKSDFHSQMAVHKLAKSIPLRRQVSADSSASMNSGVLLVRPSRLSSSG
                     TPMLAGVSEYELPEDPRWELPRDRLVLGKPLGEGCFGQVVLAEAIGLDKDKPNRVTKV
                     AVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL
                     REYLQARRPPGLEYCYNPSRHPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAAR
                     NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWS
                     FGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQ
                     RPTFKQLVEDLDRIVALTSNQEYLDLSMPLDQYSPSFPDTRSSTCSSGEDSVFSHEPL
                     PEEPCLPRHPAQLANGGLKRR"
     misc_feature    295..579
                     /gene="FGFR1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    373..387
                     /gene="FGFR1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    409..426
                     /gene="FGFR1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    475..489
                     /gene="FGFR1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    517..534
                     /gene="FGFR1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    556..567
                     /gene="FGFR1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    676..960
                     /gene="FGFR1"
                     /note="Second immunoglobulin (Ig)-like domain of
                     fibroblast growth factor (FGF) receptor; member of the
                     I-set of IgSF domains; Region: IgI_2_FGFR; cd05857"
                     /db_xref="CDD:409443"
     misc_feature    676..687
                     /gene="FGFR1"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409443"
     misc_feature    709..726
                     /gene="FGFR1"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409443"
     misc_feature    order(712..714,718..720,724..726)
                     /gene="FGFR1"
                     /note="FGF binding site [polypeptide binding]; other site"
                     /db_xref="CDD:409443"
     misc_feature    order(715..717,736..744,748..750)
                     /gene="FGFR1"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:409443"
     misc_feature    736..762
                     /gene="FGFR1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409443"
     misc_feature    778..795
                     /gene="FGFR1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409443"
     misc_feature    802..810
                     /gene="FGFR1"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409443"
     misc_feature    835..846
                     /gene="FGFR1"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409443"
     misc_feature    856..873
                     /gene="FGFR1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409443"
     misc_feature    898..921
                     /gene="FGFR1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409443"
     misc_feature    928..960
                     /gene="FGFR1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409443"
     misc_feature    982..1296
                     /gene="FGFR1"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1036..1050
                     /gene="FGFR1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1075..1089
                     /gene="FGFR1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1189..1203
                     /gene="FGFR1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1231..1248
                     /gene="FGFR1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1270..1281
                     /gene="FGFR1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1603..2508
                     /gene="FGFR1"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Fibroblast Growth Factor Receptor 1; Region: PTKc_FGFR1;
                     cd05098"
                     /db_xref="CDD:270678"
     misc_feature    order(1663..1668,1672..1674,1678..1680,1687..1689,
                     1747..1749,1753..1755,1846..1848,1894..1905,1915..1917,
                     2080..2082,2092..2097,2101..2103,2134..2136,2188..2202,
                     2227..2229,2329..2331)
                     /gene="FGFR1"
                     /note="active site"
                     /db_xref="CDD:270678"
     misc_feature    order(1663..1668,1672..1674,1678..1680,1687..1689,
                     1747..1749,1753..1755,1846..1848,1894..1905,1915..1917,
                     2092..2097,2101..2103,2134..2136)
                     /gene="FGFR1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270678"
     misc_feature    order(2080..2082,2092..2094,2188..2202,2227..2229,
                     2329..2331)
                     /gene="FGFR1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270678"
     misc_feature    2131..2208
                     /gene="FGFR1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270678"
ORIGIN      
        1 gtggggctct cgcggccccg ccaggacccg agcggagccc gggggcggcg ggccggagcc
       61 ggggacgcgg gcgcccgccc gcccgcacaa gccacggcgg accctccaga ggcggaaccg
      121 cagcgccgag tgagagtcag cttgcacagg aggataaagc ccacggcaga gtctccatgg
      181 aggtgtggag ccttgtcacc aacctctaac tgcagaactg ggatgtggag ctggaagtgt
      241 ctcctgttct gggctgtgct ggtcacagcc gcgctctgca ctgccaggcc agcgccaacc
      301 ttgccggaac aagcccagcc ctggggagcc cccgtggaag tggagtccct cctggtccac
      361 cccggtgacc tgctgcagct ccgctgtcgg ctgcgggacg atgttcagag catcaactgg
      421 cctgcgggac ggggtggcag ctggtggaaa gcaaccgcaa cccgcatcac aggggaggag
      481 gtggaggtgc gggattccgt gcccgccgac tccggcctct acgcctgcgt gaccagcagc
      541 ccctcgggca gcgataccac ctacttctcc gtcaacgtct cagatgctct cccctcctcg
      601 gaggacgatg atgacgatga tgactcctct tcagaggaga aagagacaga taacaccaaa
      661 ccaaaccccg tggctcccta ctggacgtcg ccagaaaaga tggaaaagaa actgcacgca
      721 gtgccagctg ccaagacagt gaagttcaaa tgcccttcca gtgggacccc taaccccacg
      781 ctccgctggc tgaaaaatgg caaagaattc aagcctgacc acaggatcgg aggctacaag
      841 gtccgttatg ccacctggag catcataatg gactccgtgg tgccttctga taagggcaac
      901 tacacctgtg tcgtggagaa cgagtatggc agcatcaacc acacctacca gcttgatgtc
      961 gtggagcggt cccctcaccg gcccatcctg caggcagggt tgccagccaa caagacagtg
     1021 gccctgggca gcaatgtgga gttcatgtgt aaggtgtaca gcgacccgca gccccatatc
     1081 cagtggctaa agcacatcga ggtgaatggg agtaagattg gtccggacaa cctgccttat
     1141 gtccagatct tgaagacggc cggagttaat accaccgaca aagagatgga ggtgctgcac
     1201 ttaaggaatg tctcctttga ggacgcgggg gagtatacat gcttggcggg taactctatc
     1261 ggactctccc atcactctgc atggttgacc gttctggaag ccctggaaga gagaccggcg
     1321 gtgatgacct cgcccctgta cctggagatc atcatctatt gcacgggggc cttcctcatc
     1381 tcctgcatgg tggggtctgt catcatctat aagatgaaga gtggcaccaa gaagagtgac
     1441 ttccacagcc agatggccgt gcacaagctg gccaagagca tccctctgcg cagacaggtg
     1501 tcggccgact ccagcgcatc catgaactct ggggtcctgc tggtccggcc ctcgcgtctc
     1561 tcctccagcg ggacccccat gctggctggg gtctctgaat acgagcttcc cgaagaccct
     1621 cgctgggagc tgcctcggga cagactggtt ttaggcaaac ccctgggaga gggctgcttt
     1681 gggcaggtgg tgttggcgga ggccattggg ctggacaagg acaaacccaa ccgggtgacc
     1741 aaagtggctg tgaagatgct gaagtcggat gcaaccgaga aagacctgtc ggacctgatc
     1801 tccgaaatgg agatgatgaa gatgattggg aaacacaaga acatcatcaa cctgctgggg
     1861 gcctgcacgc aggacggccc cctgtatgtc atcgtggagt acgcctccaa gggcaacctc
     1921 cgagagtacc tgcaggcccg gaggccgccg gggctggaat actgctacaa tcccagccgt
     1981 catcccgagg aacagctgtc ctccaaggac ctggtatcct gtgcctatca ggtggcccga
     2041 ggcatggagt atctcgcctc caagaagtgc atacaccgag acctggccgc caggaacgtg
     2101 ctggtgacgg aggacaacgt gatgaagatc gcagactttg gcctagctcg tgacatccac
     2161 cacatcgact actataaaaa gacgaccaat ggccgactgc ctgtcaagtg gatggcaccc
     2221 gaggccttgt ttgaccggat ctacacccac cagagcgacg tgtggtcttt tggggtgctt
     2281 ctgtgggaaa tcttcactct gggcggctcc ccgtaccctg gcgtccctgt ggaggagctt
     2341 ttcaagctgc tgaaggaggg tcatcgtatg gacaagccca gtaactgcac caatgagctg
     2401 tacatgatga tgcgagactg ctggcacgcg gtaccctctc aaagacctac cttcaagcag
     2461 ctggtggaag acctggaccg catagtggcc ttgacctcca accaggagta cctggaccta
     2521 tcaatgcccc tggaccagta ctcccccagc ttccccgaca cccgcagctc tacctgctcc
     2581 tctggggagg attccgtctt ctctcacgag cccttgcccg aggagccctg tctgccccga
     2641 cacccggccc agctggccaa tggcggactc aaacggcgct gactagcacc ccgcacccct
     2701 ccccggactc catcctcagc tacggcccca gccccgctcc cgctggactc accgcctcct
     2761 ttctgccctt cctgctggca ggagccagct gtcgccccag agctcccctc ccctcttcct
     2821 ctcagcctgc cgctgacaca gacgagcagg gaggcgggga cttgttgatg gccacttggt
     2881 tccgtcccaa gtgttggacc gggacccctc ccagccgcct ggcactgcct ggagggtcag
     2941 gcagtggggg cacgggcagc acacgaggga gagccgaccg agcttttctg tgttggtttt
     3001 gtctgctccg tgcagcctgt gttcccgtgg caggtgcccg gtcctcgggc tacagcagga
     3061 gtgagggggg gtggtcagca ctcgggcctc cgtggaaggc gacctctgct ccagatggat
     3121 ggtgccagtg gcttattaat tccgatacta atttgctttg ctgaccaaat acctggtacc
     3181 ggaggatggg gacgcaaagg ctgggagcag tgtcgtggcc ctggggccca gccccaaagc
     3241 aggggctttg tacatagcta tgaagaaaac acaaagtgta taaatctgag tatatattta
     3301 catgtctttt taaaagggtc gttaccagag atttacccat tgggtaagat gctcctggtg
     3361 gctgggaggc atcagttgct atatgttaaa aacaaagaaa aaagaaaaaa aaaaaggaaa
     3421 gtgtttttaa aaaggtcata tattttttgc tacttttgct gttttatttt tttaaattat
     3481 gttctaaacc tattttcagt ttaggtccct caataaaaat tgctgctgct tcattttta
//
LOCUS       XM_032618371             498 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine zipper and EF-hand containing
            transmembrane protein 2 (LETM2), mRNA.
ACCESSION   XM_032618371
VERSION     XM_032618371.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..498
                     /gene="LETM2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:116746733"
     CDS             1..498
                     /gene="LETM2"
                     /codon_start=1
                     /product="LETM1 domain-containing protein LETM2,
                     mitochondrial"
                     /protein_id="XP_032474262.1"
                     /db_xref="GeneID:116746733"
                     /translation="MAFYSYKTVLAIARARFPSHCVHPTSSSHSPSFAFLHLPDSHLN
                     KTYMKNYGSKKYSYPTQTGHKVLHLRTRVIQKLHTSAYWLQEVPGKPQLEQTAKKPQV
                     PSPQPTEETGVKIKEEKRSYRQIIMDELKYYHNGFYLLWIDTKVAARMVWRLLHGQVL
                     TRREG"
     misc_feature    1..333
                     /gene="LETM2"
                     /note="LETM1 domain-containing protein LETM2 N-terminus;
                     Region: LETM2_N; pfam19324"
                     /db_xref="CDD:466042"
ORIGIN      
        1 atggccttct acagttataa aacagtctta gctattgccc gagcaagatt ccctagccat
       61 tgtgtccatc ccaccagctc ttctcactcc ccatcatttg catttcttca cttaccagat
      121 tcccatttaa ataaaacata tatgaagaac tatggcagca agaagtactc ctatcctact
      181 cagacaggcc ataaagtact tcacttaagg actagagtaa tacaaaagct gcacacatct
      241 gcttactggc tgcaggaggt cccgggtaaa cctcagctgg agcaaaccgc aaagaagcca
      301 caggtgccaa gccctcagcc aacagaagaa actggagtga agattaagga agaaaagcga
      361 tcttataggc agataattat ggatgaactt aaatattatc acaatggatt ctatttgctt
      421 tggattgaca ccaaagttgc tgccagaatg gtttggaggc tgttgcacgg acaggtgctg
      481 accagacgag agggatga
//
LOCUS       XM_032618372            3629 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LON peptidase N-terminal domain and ring
            finger 1 (LONRF1), transcript variant X1, mRNA.
ACCESSION   XM_032618372
VERSION     XM_032618372.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3629
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3629
                     /gene="LONRF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746734"
     CDS             100..2412
                     /gene="LONRF1"
                     /codon_start=1
                     /product="LON peptidase N-terminal domain and RING finger
                     protein 1 isoform X1"
                     /protein_id="XP_032474263.1"
                     /db_xref="GeneID:116746734"
                     /translation="MSSPVVARSSQGESQEADPRPRSRGRFWGVGGGGDRLERAAAES
                     ERWELLLRRGELLALGGHLKGALEAYAAALRRGAPVRPECLGTLVDCLVFNYRLRHGL
                     GWSATPAEGAHPGAGGLLSCLGCRGFLSEPVTVACGHSYCRRCLRRELRARCRLCRDR
                     LPPAAAADAEGTSPRPPPLAAAIAASGFRTSVVLNHLAEKWFPGERERARAAGRLGEL
                     LHQGRYREALAAACEELRTEPSDLTLKIYRAESYAGLREFKAAIEDLNAVLFQLPNWP
                     EVYFRKGKVLHDAGFLGDALQLFLQCLALDEDFAPAKLEVEKILCDLLSPENLKEGLK
                     DSSWSSLPCIKNKPFGFASVIEESHCASELSPEQNEEIAEVTSEPVKGSLNHARSAQA
                     VNSTDMPAREDCLKRVSSELSLSVQEQGVLLKRKLSLLDQDVIVNEDGRNKLKRQGET
                     PSEVCTFSLTYGDIPEELIDVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHTP
                     YCPLCKESLKEYLADRRYCVTQLLEDLIVKYLPDELSERKKIYDEETAELSHLTKNVP
                     IFVCTMAYPTVPCPLHVFEPRYRLMIRRSIQTGTKQFGMCVSDTQNSFADYGCMLQIR
                     NVHFLPDGRSVVDTVGGKRFRVLKRGMKDGYCTADIEYLEDVKVENEEEIENLQQLHD
                     LVYSQACSWFQNLRDRFRSQILQHFGSMPGREENLQAIPNGPAWCWWLLAVLPVDPRY
                     QLSVLSMKSLKERLTKIQHILTYFSRDQSK"
     misc_feature    451..591
                     /gene="LONRF1"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(463..465,472..474,508..510,514..516,523..525,
                     532..534,559..561,568..570)
                     /gene="LONRF1"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
     misc_feature    718..>1035
                     /gene="LONRF1"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; Region: TPR; COG0457"
                     /db_xref="CDD:440225"
     misc_feature    724..807
                     /gene="LONRF1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    order(727..729,736..741,748..753,757..759,826..828,
                     835..840,847..852,856..861,928..930,937..942,949..954,
                     961..963)
                     /gene="LONRF1"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    820..912
                     /gene="LONRF1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    925..1011
                     /gene="LONRF1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1189..1653
                     /gene="LONRF1"
                     /note="Uncharacterized conserved protein, contains RING
                     and CCCH-type Zn-fingers [General function prediction
                     only]; Region: COG5152"
                     /db_xref="CDD:227481"
     misc_feature    1516..1650
                     /gene="LONRF1"
                     /note="second RING finger, HC subclass, found in the LON
                     peptidase N-terminal domain and RING finger protein
                     family; Region: RING-HC_LONFs_rpt2; cd16514"
                     /db_xref="CDD:438177"
     misc_feature    1789..2385
                     /gene="LONRF1"
                     /note="ATP-dependent protease La (LON) substrate-binding
                     domain; Region: LON_substr_bdg; pfam02190"
                     /db_xref="CDD:426647"
ORIGIN      
        1 gcgccacgcc cccctgctcg cgggccgcgt gcggagccgc gcgccccgga ggctccggga
       61 ccgtggcggc ggcggcggag gagcaatcct ttgcgggcca tgtcttctcc ggtcgtagcg
      121 aggagctccc agggagagag ccaggaggcg gatccccgtc cgcggagccg gggccggttc
      181 tggggagtgg gcggcggcgg cgaccggctg gagcgcgcgg ccgcggagtc ggagcgctgg
      241 gagctgctgc tccgccgggg cgagctgctg gcgctgggcg gccacctgaa gggagcgctg
      301 gaggcgtacg cggcggcgct gcgccgcggg gccccggtca ggcccgagtg cctcggtacc
      361 ctggtggact gcctggtgtt caactaccgg ctccgccacg ggctgggctg gagcgcgacc
      421 ccggcggagg gcgcccaccc cggcgccggc gggctgctca gctgcctggg ctgccggggc
      481 ttcctgagcg agccggtgac cgtggcctgt ggccacagct actgccgccg ctgcctgcgg
      541 agagagctcc gcgcccgctg ccgcctctgc cgggaccggc tgccgcccgc cgcggccgct
      601 gatgctgagg ggacctcccc gcggccgccg cctctggccg ccgccatcgc tgcctcgggc
      661 ttcaggacca gcgtcgttct caaccacctg gccgaaaagt ggttcccggg cgagcgggag
      721 agagcccggg cggccgggcg tctcggggag ctgctgcacc aggggcgcta ccgggaggcc
      781 ctggccgccg cctgcgagga gctgcgaaca gagcccagcg acttgactct gaaaatttac
      841 agagctgaat catatgctgg tctgcgagag tttaaagcag ccatagaaga tttaaatgca
      901 gttctctttc aactgccaaa ttggcctgag gtctacttca ggaaaggaaa agtcctccat
      961 gatgctggtt ttttaggtga tgccttacaa ctgtttcttc agtgcttagc gcttgatgaa
     1021 gatttcgcac ctgcaaagct agaagtagaa aagattttat gtgatttatt gtcacctgaa
     1081 aacttaaaag aaggcctgaa ggactcttcc tggagttcat taccatgtat taaaaacaaa
     1141 ccttttggtt ttgcttcagt aatagaagag tctcattgtg ccagtgaact tagcccagag
     1201 cagaatgaag aaatagcaga ggtcacttca gagcctgtca aaggaagcct aaaccatgct
     1261 cggtcagcac aggctgtaaa ttcgacagac atgcctgcca gagaggattg tttaaaaaga
     1321 gtgtcctcag aactttcact ctctgttcaa gagcaaggtg ttctgctgaa aagaaagctg
     1381 tctctcttag accaggatgt gattgtaaat gaagatggaa gaaataagct gaaaagacag
     1441 ggagaaactc ccagtgaagt ctgtacgttt tcattaactt acggtgacat cccagaagaa
     1501 ttaatagatg tctcagattt tgagtgttct ctctgcatga ggttgttttt tgagccagta
     1561 acaacccctt gtggacattc attctgtaag aattgtcttg agcgttgttt agatcacaca
     1621 ccatactgtc ccctttgtaa ggaaagctta aaagagtatc tagcagatag gaggtactgt
     1681 gtcacacagc tgttggaaga tttaatagtg aagtatctgc ctgatgaact gtctgagaga
     1741 aaaaaaatat atgatgaaga aactgctgaa ctctcacact tgaccaagaa tgttccgata
     1801 tttgtttgca ctatggccta ccccactgtg ccttgccctc ttcatgtatt tgagccaaga
     1861 tacagattga tgattcgaag aagtatacag actggaacta aacagtttgg gatgtgtgtc
     1921 agcgatacac aaaatagttt tgcagattat ggttgtatgt tacaaattag aaatgtacat
     1981 ttcttgcctg atgggaggtc tgtggttgac acagttggag gaaagcggtt tagggtttta
     2041 aaaagaggga tgaaagatgg atactgcact gcagacattg aatatctgga agatgttaag
     2101 gttgagaatg aagaggagat agagaacctc caacagcttc acgatttggt ctactctcaa
     2161 gcctgcagct ggtttcagaa tttacgagac agatttcgaa gccaaattct tcagcacttt
     2221 ggatcaatgc ccgggaggga ggaaaacctc caggcaatcc ctaatggacc cgcctggtgt
     2281 tggtggcttc ttgccgtcct tcccgtcgac ccccgctatc agctgtcggt tttgtcaatg
     2341 aagtctttga aagaacggtt gacaaagata cagcatatac tgacttattt ttctagagac
     2401 caatctaagt aaccaactgc ttggatcttc ctctaaaatt accctaatct ggctgtggtg
     2461 atggccagat tgtccgctgc ctttgcacat ccagtgctgg tttgagaaat gtaatgaaac
     2521 tgttcttttt ttctttttct ttttccttca acctcctgaa tcatgtggtt ctgcaaacag
     2581 acaccttcaa ctaggattta gaccactaag aacttgcaca gaaaaacaca cacgaaatgt
     2641 gtgttaaacc tctacattgt gatgaagttg cactatgtac catactctaa atgaaatgag
     2701 aactctgtgt gtgggtgcgt gcgtgcgtgt gtgtgtgtgt gtgtgtgtgt gcgcgcgcgc
     2761 gtgcgtatgc gcgcccgtgt gggtagtatg ggtgcatttt ctctggcttt aaaattttaa
     2821 aagaaagaaa aaaagccata gagagcagga cttgccgagg gtcatttatt gcccaagttt
     2881 acaacaggag cgatacaagc ttttgcaaat tgaatttgcc tcagatttct ctgtcctgat
     2941 gcttaatttg cacaagtacg taagctatgg tattgagtat cactttttgt cggaaatacc
     3001 gctcttgctg aactgtcttg accattaact aggacacagt ttcttattta tgtaaatact
     3061 tgcatcccaa tagccaacag gcatcggatg cagaacctag agccagtttt caggaacaat
     3121 tgcaaacctg acttggtact gtgcatctat tcataaaaca cttaaaactg tgaaaatatg
     3181 gtttacactt aactgtacat aaaggtaaat ggagaactca gttcagtacc agttagtttg
     3241 tacattttag gggggctttt cacattaact gcccatctat gtaatttata gtttgacata
     3301 tgtttgtttt aaaaaattac atagtataaa cccattaaga atctaaggga agagaagaag
     3361 cttaatgtag aactaagctt ttaaagtatg ttggtttttt ttttttaatt ctcgtcttgg
     3421 tgcaaatgtt agttatgcct tattcatatc acagttagat caccatgctg tgacatggtc
     3481 tgtattcatg ctgccctaga tacttttgta attatttgtt gcagacttgt gactgtccct
     3541 cttaactttc ttttatgtaa gtaatttgta aaagtttctt aaaaattttg cttttgctta
     3601 tttaattttg aataaaagct aaattcata
//
LOCUS       XM_032618373            2056 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LON peptidase N-terminal domain and ring
            finger 1 (LONRF1), transcript variant X2, mRNA.
ACCESSION   XM_032618373
VERSION     XM_032618373.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2056
                     /gene="LONRF1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746734"
     CDS             71..1930
                     /gene="LONRF1"
                     /codon_start=1
                     /product="LON peptidase N-terminal domain and RING finger
                     protein 1 isoform X2"
                     /protein_id="XP_032474264.1"
                     /db_xref="GeneID:116746734"
                     /translation="MSSPVVARSSQGESQEADPRPRSRGRFWGVGGGGDRLERAAAES
                     ERWELLLRRGELLALGGHLKGALEAYAAALRRGAPVRPECLGTLVDCLVFNYRLRHGL
                     GWSATPAEGAHPGAGGLLSCLGCRGFLSEPVTVACGHSYCRRCLRRELRARCRLCRDR
                     LPPAAAADAEGTSPRPPPLAAAIAASGFRTSVVLNHLAEKWFPGERERARAAGRLGEL
                     LHQGRYREALAAACEELRTEPSDLTLKIYRAESYAGLREFKAAIEDLNAVLFQLPNWP
                     EVYFRKGKVLHDAGFLGDALQLFLQCLALDEDFAPAKLEVEKILCDLLSPENLKEGLK
                     DSSWSSLPCIKNKPFGFASVIEESHCASELSPEQNEEIAEVTSEPVKGSLNHARSAQA
                     VNSTDMPAREDCLKRVSSELSLSVQEQGVLLKRKLSLLDQDVIVNEDGRNKLKRQGET
                     PSEVCTFSLTYGDIPEELIDVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHTP
                     YCPLCKESLKEYLADRRYCVTQLLEDLIVKYLPDELSERKKIYDEETAELSHLTKNVP
                     IFVCTMAYPTVPCPLHVFEPRYRLMIRRSIQTGTKQFGMCVSDTQNRLRMKRR"
     misc_feature    422..562
                     /gene="LONRF1"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(434..436,443..445,479..481,485..487,494..496,
                     503..505,530..532,539..541)
                     /gene="LONRF1"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
     misc_feature    683..>1006
                     /gene="LONRF1"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; Region: TPR; COG0457"
                     /db_xref="CDD:440225"
     misc_feature    695..778
                     /gene="LONRF1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    order(698..700,707..712,719..724,728..730,797..799,
                     806..811,818..823,827..832,899..901,908..913,920..925,
                     932..934)
                     /gene="LONRF1"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    791..883
                     /gene="LONRF1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    896..982
                     /gene="LONRF1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1160..1624
                     /gene="LONRF1"
                     /note="Uncharacterized conserved protein, contains RING
                     and CCCH-type Zn-fingers [General function prediction
                     only]; Region: COG5152"
                     /db_xref="CDD:227481"
     misc_feature    1487..1621
                     /gene="LONRF1"
                     /note="second RING finger, HC subclass, found in the LON
                     peptidase N-terminal domain and RING finger protein
                     family; Region: RING-HC_LONFs_rpt2; cd16514"
                     /db_xref="CDD:438177"
     misc_feature    1790..>1888
                     /gene="LONRF1"
                     /note="Uncharacterized conserved protein, LON_N-like
                     domain, ASCH/PUA-like superfamily [Function unknown];
                     Region: LON/PUA; COG2802"
                     /db_xref="CDD:442054"
ORIGIN      
        1 tgcggagccg cgcgccccgg aggctccggg accgtggcgg cggcggcgga ggagcaatcc
       61 tttgcgggcc atgtcttctc cggtcgtagc gaggagctcc cagggagaga gccaggaggc
      121 ggatccccgt ccgcggagcc ggggccggtt ctggggagtg ggcggcggcg gcgaccggct
      181 ggagcgcgcg gccgcggagt cggagcgctg ggagctgctg ctccgccggg gcgagctgct
      241 ggcgctgggc ggccacctga agggagcgct ggaggcgtac gcggcggcgc tgcgccgcgg
      301 ggccccggtc aggcccgagt gcctcggtac cctggtggac tgcctggtgt tcaactaccg
      361 gctccgccac gggctgggct ggagcgcgac cccggcggag ggcgcccacc ccggcgccgg
      421 cgggctgctc agctgcctgg gctgccgggg cttcctgagc gagccggtga ccgtggcctg
      481 tggccacagc tactgccgcc gctgcctgcg gagagagctc cgcgcccgct gccgcctctg
      541 ccgggaccgg ctgccgcccg ccgcggccgc tgatgctgag gggacctccc cgcggccgcc
      601 gcctctggcc gccgccatcg ctgcctcggg cttcaggacc agcgtcgttc tcaaccacct
      661 ggccgaaaag tggttcccgg gcgagcggga gagagcccgg gcggccgggc gtctcgggga
      721 gctgctgcac caggggcgct accgggaggc cctggccgcc gcctgcgagg agctgcgaac
      781 agagcccagc gacttgactc tgaaaattta cagagctgaa tcatatgctg gtctgcgaga
      841 gtttaaagca gccatagaag atttaaatgc agttctcttt caactgccaa attggcctga
      901 ggtctacttc aggaaaggaa aagtcctcca tgatgctggt tttttaggtg atgccttaca
      961 actgtttctt cagtgcttag cgcttgatga agatttcgca cctgcaaagc tagaagtaga
     1021 aaagatttta tgtgatttat tgtcacctga aaacttaaaa gaaggcctga aggactcttc
     1081 ctggagttca ttaccatgta ttaaaaacaa accttttggt tttgcttcag taatagaaga
     1141 gtctcattgt gccagtgaac ttagcccaga gcagaatgaa gaaatagcag aggtcacttc
     1201 agagcctgtc aaaggaagcc taaaccatgc tcggtcagca caggctgtaa attcgacaga
     1261 catgcctgcc agagaggatt gtttaaaaag agtgtcctca gaactttcac tctctgttca
     1321 agagcaaggt gttctgctga aaagaaagct gtctctctta gaccaggatg tgattgtaaa
     1381 tgaagatgga agaaataagc tgaaaagaca gggagaaact cccagtgaag tctgtacgtt
     1441 ttcattaact tacggtgaca tcccagaaga attaatagat gtctcagatt ttgagtgttc
     1501 tctctgcatg aggttgtttt ttgagccagt aacaacccct tgtggacatt cattctgtaa
     1561 gaattgtctt gagcgttgtt tagatcacac accatactgt cccctttgta aggaaagctt
     1621 aaaagagtat ctagcagata ggaggtactg tgtcacacag ctgttggaag atttaatagt
     1681 gaagtatctg cctgatgaac tgtctgagag aaaaaaaata tatgatgaag aaactgctga
     1741 actctcacac ttgaccaaga atgttccgat atttgtttgc actatggcct accccactgt
     1801 gccttgccct cttcatgtat ttgagccaag atacagattg atgattcgaa gaagtataca
     1861 gactggaact aaacagtttg ggatgtgtgt cagcgataca caaaataggt tgagaatgaa
     1921 gaggagatag agaacctcca acagcttcac gatttggtct actctcaagc ctgcagctgg
     1981 tttcagaatt tacgagacag atttcgaagc caaattcttc agcactttgg atcaatgccc
     2041 gggagggagg aaaacc
//
LOCUS       XR_004347857            5746 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746735
            (LOC116746735), ncRNA.
ACCESSION   XR_004347857
VERSION     XR_004347857.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5746
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5746
                     /gene="LOC116746735"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 20% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746735"
     ncRNA           1..5746
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746735"
                     /product="uncharacterized LOC116746735"
                     /db_xref="GeneID:116746735"
ORIGIN      
        1 tggatctgga tagtcataga gtgacacgga gcagaggatg aggacggcaa gccgtggaaa
       61 agtgtgtggg aattctgcag gaccctcctc tttggactcc agggtccatc agccggggaa
      121 gaactagatg gttcaaatca gatggatcaa ataggatacc cctcgaaaga caagatcaac
      181 ctctgagggt gtgctcaata atgtttgtac gaagaagaga tgagaggtcc ttggtcccgt
      241 ttgtaaagtg aagaatcctt tgccatggaa aataatctgt ctcccaattt aaccattaga
      301 gaagttcaga ctttaacata tttgattttt ataaataaga gccctcttgt ctgctgtcct
      361 gcaggatacc tgggagctta gctcttatat ttgatcaggc actgcgggtg ttgtgattgg
      421 gagacagagt gtgcttccat gaacacagga tgtgcaggag gcatattgga ttcctttgcc
      481 ttcagcgtaa cagaggaggt ggccccaaac accatgggaa ggctcctgat gctgacctgg
      541 gggtgatccc catctccctg gagctccgtg gcctctgggc ttggcctcaa acacaggtaa
      601 gtcccttatg ttccccagct gggatggcct gggttcaact gtaagcctcc actgatggtc
      661 ttgggggcta aacaaggttt ttccagtgag cagagccatc tcctgcaact gaaggggaca
      721 cagctgaagg tgaaaagagt ggacagtgtc tagtttcagg tggcgctgtt gtgtgtcttg
      781 actgtggatg gctatcttta caaacttcaa gggaagctgc ctggttagct ccaaggtctt
      841 tgtaggcccg ggcctctttc ccgggtgtcc cgccacacct ggcgcgcccc ttgcaactgg
      901 ttgggccagg agcgtagcat caggttaatg agaggcaggg gctggtggat cccggtcacc
      961 atttgcactt ggcgtgtccg tggatcactt ctctttttgc tggtctggtt gaagtcgctc
     1021 tgaaagatca atgcgaactt gaattaccac gcgctccctt gtgcaggtag taagcacgct
     1081 cactgcacgc tgctttcccc tgggtaagaa ggcaaggcag acgcgcggat gcgcagcacg
     1141 gccatcattt atcaagacag ctctgcatgg ctccgcatct cgcgggcctc ctgtgttccg
     1201 cgggcctggc cggcaggggg ctgagccgca gtctgcgcag gccccacttc tgctccacag
     1261 cccccgggta gggggcgctc agaagggaag ggggcgcaga tcaccctccc ttcggccctt
     1321 tgcagccagc tggggaggag cctggggtct ggatgcagac tgcgtgcatc cgagggcacc
     1381 gagccagatg tggtggcgca ctcgggaggg ccctccccta gcctcgtaga caggcccgtt
     1441 caccttcgca tcccttgacc tgagccaaga tgctcaactg ctcgccttct tctgagcctc
     1501 cacctaaacc accccgtggg gccaccttta agcctctgct gccattgtga cctggcgccg
     1561 tcacaccgct ctccgccccc aaaccccgca accgcgctga caccctgggt ggaagcgcgg
     1621 tgcgcttgtg tcgactccac ctccataggg aacggcccac ccctctgggg gcagacccaa
     1681 ggggggtttc ttaattacaa aatgaaaaat ttcacatgtg ggcccaaact gcttggtttt
     1741 acgctggaaa agtatgaaaa ggcaggcgtc tgtttgttca gaaatgacag cctccctgag
     1801 ctggaaggga cttcagaagt tatatgtcac aaccccctca tcatacacag aattggagaa
     1861 actttgacca tgggtgtaca caatccaggt ggtttaccct ctgggtaaaa ggggttttgg
     1921 ccttatgaca cgcaacagtg tcttttaact cacacccttt tggccgttgc aaacttttct
     1981 tacgtgttga ggtggctcta ttttttcccc ccagataaac acgaaaaaac tttgattttt
     2041 catataaaca attccaagac gttcttgaag caagttgttt atgtaaacag atatagatga
     2101 aatcttcata aactcagttc ttgctggctg catttgaggt atttagttac atttggagcc
     2161 agataacttg gccacatcaa attgaaggga aacaaaagtg aactgttttg ttactcaaaa
     2221 taccccttct ggttagagag gtttgatcca aatctagaga agcctgccta tgggacaggc
     2281 cttaattttt ttacaccaga gttgatgtaa taggggacaa tgatatcttg ataactggat
     2341 taataaatct tctaaggcca aggcacttgt agaaaaatta tcctggtaat aaatgtgcac
     2401 atgggaagct ttggttccct ccatgctgga tgagaagtat tgtcacctta gacctgagtc
     2461 agagatttca ggtcctgaat tttcacagac aaaaaccaga gtcaggatca ggttaaatta
     2521 gtggccagaa ttctgggggt tcatatgagt taatcagcta acagtgggaa gggtcatcaa
     2581 aactgacact tggggcttcc ctggtggcgc agtggttgag agtccgcctg ccgaaacagg
     2641 ggacacgggt tcgtgcccca gtccgcgaag atcccatgtg ccacggagcg gatgggcccg
     2701 tgagccatgg ccgctgggcc tgcgcgtcct ccgcaacggg agaggccaca gcagtgagag
     2761 gcccacgtac cgctaaaaaa aaaaaacaaa aactgacact tgtatactga aacatattcc
     2821 catacttcac attttactta gagctctggt caaggcgttt ctgattacaa ggcattttat
     2881 tcaaattgat cacatgtttt tgatttggtt tcatatggga gttgatgtga ttaactaagt
     2941 agagacataa gaatatggga actaatccta ctgggttaga tccgtggacc attcagccca
     3001 gtattctctc atcgacagaa ataccaaagg atggatcata ggaaagcatt gtcttccttg
     3061 actaaattaa atttcggtag agtctgactt cctttagtag tattttaatg taccaattct
     3121 taaacttgtt caaaaccctt taataatgca ttttgtttat ttttgtggta actagtgttc
     3181 catgctggat gaaagagtta ttcatgttgt ttatttattt cacttaagtt tgaaagaatg
     3241 tccgttctta cttaagtttg aaagactgtc ccttcatcta gctatgtcac agttggaaaa
     3301 gaaatggaaa agagatgctt ctctctggtg caaggcccta aaccagcctg gcctacagca
     3361 tgcactggac gctgaataaa gatgacctat aacgcgtatc agtctgtgtt ccacatcttc
     3421 ctcctccgct tttttctctt aactttctca acgactaacc tggttgctta ttctaccatt
     3481 atgtccttgt tttgactctc tgatctatgc atgttcacct cctggttatg aactcttcca
     3541 tcatctctcc tttttttgac actgaccctg tagactgtct tgggacacag atcatctgac
     3601 ctaacctagt cactggtgtt tttctaccta acatgcatga tttccttcac cagttccaac
     3661 accctcccca tacaaccaac atacttcagt ctttcagatg aaattctaca aatattcact
     3721 ttatccaagt cactcattat tttatgaatt gcaaacttga attcttatga tttatctagt
     3781 aactcagatt caaaaaatgt cacataggag ctgaaaatga ggcaagcaaa ggtacactgc
     3841 atgcctttat cgtctaaacc aggtgacagc ccagtcaagc tgtacaatcc tgggaatgta
     3901 caaatgaaac aaaaccacgc ggttggggga taggagcagg ggctcctctg tatttaatgg
     3961 gcgtggcgag ttgactgggg atttaccagt ttaccagatt cccagcacat acatgaactt
     4021 tcaaggagtc aattcacttg ttgtttttcc ttttcaagta aggtgatatt acaacttctc
     4081 tttctcaaat gtaattataa ttttgtccag tcctttccta ggaaatcatg ttataggtcc
     4141 attccgcatc attaaatcca tcgacttcac tctcccctgt agctgtggca caaatggcca
     4201 aagccatcac aagcagaagc tgagcatcga agcacacatg tgtgtatcct ctgtgtaccg
     4261 tctgtatgga gcaccagagt cctttcctta ttctttcatt caatagcttt tcttattgag
     4321 gacctattat gtgttctaga cactgaaaat ccaacagaga ataaagcagt ttattataaa
     4381 gttttcccta tacaatttat attcttgggg gagacaataa ataagaaaaa gaaaccatgc
     4441 agtatattag ggataaatgc taaagataaa aaacaggaaa aagagatagg gagaccaggc
     4501 aagacatcac aggtgccatt tgctcaaaag tctaaaggaa gagagaaagg cagcctggag
     4561 gatctcaagc agaagagcat ccctggccag gagaacagag aggaccaagg tcctgcgagg
     4621 ccgttgtgtc tggagaagtg tgagaaaaga gagagcaaaa gagctggagg gtaggataga
     4681 ccaagcactg acttctgggt catggttggg actttggatt ttcttctgag ttaaaatgag
     4741 aaatagaggc tgtgtttcta ggagcatgct gtttatgttt tgagaagata acgctgcctg
     4801 ctgcgctgat aacagaatgc aagggtgtca tgacaaaagc agaggccagt ggcagcaatc
     4861 taggtgagag atgctgctag tggctgggac cagggtggtg gcaggggggg agtgagttgg
     4921 agtcagagtc tggatacact ctgaagggag aaccaaaagg attttctggc ccaccatgtg
     4981 taaagtgtga gagaaagaga ggagttgagg atgactccaa gatttttttg acccacgtag
     5041 gcatcctacc aggtcttctc aaatgttcaa agactttctg attttcccag gagtttagta
     5101 agcatttcta aataataata gtaataataa tgttagatct tatccaaacg aatagcgctt
     5161 tataattttc aaattatcaa agctttattt gctatgttag gctgtttgtt tctttataat
     5221 tttcaaatta tcaaagcttt atttgctgtt aggctgtttg tttctttata attttcaaat
     5281 tatcaaagct ttatttgcta tgttaggctg tttgtttctt tataattttc aaattatcaa
     5341 agctttattt gctatgttag gctgtttgtt tcttatccaa acgaatagcg ctttataatt
     5401 ttcaaattat caaagcttta tttgctgtta ggctgtttgt ttctttgttt ccttgattta
     5461 tttatacatg tacacatata tatatttgct gattataact tttctctgta tctgtttcca
     5521 cttgcaaaat tttttctctt acctaaagaa taccaagacc cgggcttccc tggtggcgca
     5581 gtggttgaga gtccgcctgc cgatgcaggg gacacgggtt cgtgccctgg tccgggaaga
     5641 tctcacatgc cgcgcagcgg ctgggcccgt gagccatggc cgctgagcct gcgcgtcgga
     5701 gcctgtgctc cgcaacggga gaggccacaa cagtgagagg cccgcg
//
LOCUS       XM_032618374            6009 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus malignant fibrous histiocytoma amplified
            sequence 1 (MFHAS1), transcript variant X1, mRNA.
ACCESSION   XM_032618374
VERSION     XM_032618374.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6009
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6009
                     /gene="MFHAS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746736"
     CDS             142..3300
                     /gene="MFHAS1"
                     /codon_start=1
                     /product="malignant fibrous histiocytoma-amplified
                     sequence 1 isoform X1"
                     /protein_id="XP_032474265.1"
                     /db_xref="GeneID:116746736"
                     /translation="MAGTDSGNLKTVRLWRDAALRARKLRSNLRQLSLSAAGGCPGTD
                     QLDSPDAPQLVLPANIGDIEVLNLGNNGLEEVPDGLGSALGSLRVLVLRRNRFARLPP
                     AVAELGHHLTELDVSHNRLSVLSAEVVSALRELRKLNLSHNQLPALPAQLGALVHLEE
                     LDVSFNRLAHLPDSLSCLSRLRTLDVDHNQLTAFPWQLLQLAALEELDVSSNRLRGLP
                     EDISALRALKILWLSGTELGTLPSGFCELASLESLMLDNNGLQALPAQFSRLQRLKML
                     NLSSNLLEEFPAALLPLAGLEELYLSRNQLTSVPSLISGLGRLLTLWLDNNRLRYLPD
                     SIVELTGLEELVLQGNQIAVLPDNFGRLSRVGLWKIRDNPLIQPPYEVCMKGIPYIAA
                     YQKELAHSQPAVQPRLKLLLMGHKAAGKTLLRRCLTEDRVEGNQGGGDKEKSHPPSPP
                     PASKGIEVTSWTADASRGLRFIVYDLAGDDSYEVIQPFFLSPGALYVLVVNLATYEPL
                     RFPTTVGSFLHRVGARVPHAVVCVVGTHADLCGEQELEEKCLDIHRQIALQEKHDAEG
                     LSRLAQVVDEALARDFELRSASPHAAYYGVSDKNLRRRKAHFQYLLNHRLQILSPVLP
                     VSCRDPRQLQRLRDKLLSVAEHREIFPNLHRVLPRSWQVLEELHFQPPQAQRLWLSWW
                     DSARLGLQAGLTEDRLQSALSYLHESGKLLYFEDSPALKEHVFHNLSRLIDILNVFFQ
                     RDPSLLLHKLLLGTSGEGEAESRGESSPLMAPPAPSQDALRATQLHHYVEGFLLHGLL
                     PAHVIRLLLKPHIQAQQDLQLLLELLEKMGLCYCLNKAKGKPLNGSTAWYKFPCYVQN
                     EVPHAEAWINGTNLAGQSFVAEQLQIEYSFPFTFPPSLFARYSVQINSHVVHRSDGKL
                     QIFAYRGKVPVVVSYRPAKGVLQPDTLSIASHASLPNIWTAWQAITPLVEELNVLLQE
                     WPGLHYTVHILCSKCLKRGSPNPHAFPGELLSQPRPEGVAEIICPKNGSERVNVALVY
                     PPTPTVISPCSKKNVGEKHRNQ"
     misc_feature    <328..606
                     /gene="MFHAS1"
                     /note="hypothetical protein; Provisional; Region:
                     PLN03150"
                     /db_xref="CDD:178695"
     misc_feature    328..399
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    400..471
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <472..>1251
                     /gene="MFHAS1"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    472..543
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    544..612
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    613..681
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    682..819
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    820..888
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    889..957
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    958..1026
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1027..1095
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1096..1164
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1165..1227
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1360..>1791
                     /gene="MFHAS1"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; Region: P-loop
                     containing Nucleoside Triphosphate Hydrolases; cl38936"
                     /db_xref="CDD:476819"
     misc_feature    1381..1404
                     /gene="MFHAS1"
                     /note="G1 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    1498..1500
                     /gene="MFHAS1"
                     /note="G2 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    1510..1518
                     /gene="MFHAS1"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206648"
     misc_feature    1564..1575
                     /gene="MFHAS1"
                     /note="G3 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    order(1570..1575,1621..1626)
                     /gene="MFHAS1"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206648"
     misc_feature    1744..1755
                     /gene="MFHAS1"
                     /note="G4 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    2113..>2340
                     /gene="MFHAS1"
                     /note="C-terminal of Roc, COR, domain; Region: COR;
                     pfam16095"
                     /db_xref="CDD:406489"
ORIGIN      
        1 aggacccgcc gccgccggtc gccgagggct ggtaggaagg gaggagcggg agcgaaaggg
       61 ccccggagac tggcgcccgc cggggcgcag cgcggcatgt agctgcgggc tcccgcgcga
      121 gggtgtcggc ccggccccgc catggctggg acggacagcg ggaacctgaa gacggtgagg
      181 ctgtggcggg acgccgccct gcgcgccagg aagctgcgga gcaacctgcg ccagctcagc
      241 ctcagcgcgg ccgggggctg cccggggacc gaccagctcg actctcccga cgcgccccag
      301 cttgtgctgc cggccaacat cggggacatt gaggtgctga acctggggaa caacggcctg
      361 gaggaggtgc ccgacgggct gggctcggcg ctgggcagcc tccgcgtcct ggtcctgcgc
      421 cggaaccgct tcgcccggct gcccccagcg gtggccgagc tgggccatca cctaaccgag
      481 ctggacgtga gccacaaccg gctgagcgtc ctaagcgccg aggtggtgag cgccctgcgc
      541 gagctgagga agctcaacct cagccacaac cagctgcccg ccctgcccgc ccagctgggt
      601 gcgctggtcc acctggagga gctggacgtc agctttaacc gcctggcgca cctgcccgac
      661 tccctctcct gcctctcccg cctgcgcacc ctcgacgtgg accacaacca gctcacggct
      721 tttccgtggc agctgctgca gctggcggcc ctggaggagc tcgacgtgtc cagcaaccgg
      781 ctgcggggcc tacctgagga tatcagtgcc ctgcgtgccc tcaagatcct ctggctgagc
      841 gggaccgagc ttggcaccct gcccagcggc ttctgcgagc tggccagcct ggagagcctc
      901 atgctggaca acaacgggct gcaggcttta cccgcccagt tcagccgcct gcagcgactc
      961 aagatgctca acctctcttc caacctcttg gaggagttcc ctgccgcgct gctgcccctg
     1021 gctggtctgg aggagctcta ccttagtcgc aaccagctca cttctgtgcc gtccctgatc
     1081 tcgggcctgg gccgtcttct caccctgtgg ctggataata accggctccg ctacctgcct
     1141 gattccatcg tggagctcac gggcctggag gagctggtcc tgcaggggaa ccagatcgct
     1201 gtgctgccag acaactttgg ccggctctcc cgggtgggcc tgtggaagat cagggacaac
     1261 ccgctgatcc agccccccta cgaggtctgt atgaagggca tcccctacat cgcagcttac
     1321 cagaaggagc tggctcattc ccagccggcg gtccagcccc gcctcaagct gctcctgatg
     1381 ggccataaag ctgcgggaaa gaccctgctc cgtcgctgcc tgaccgagga cagagtggag
     1441 gggaaccaag gaggagggga caaggagaag agccacccgc cttcacctcc tcccgcgagc
     1501 aagggcatcg aggtgaccag ctggacagcg gatgcctccc ggggcctgcg gttcatcgtg
     1561 tatgacttag ctggggatga cagttatgag gtgattcagc ccttcttcct ctccccgggg
     1621 gccctttatg tgctggtggt gaacttggcc acctatgagc cgctccgctt tcccaccacc
     1681 gtgggctcct tcctgcatcg ggtaggggcc cgggtgcctc acgccgtggt gtgcgttgtg
     1741 ggcacgcacg ccgacctctg cggggagcag gagctggagg agaagtgtct ggacatccac
     1801 cgccagatcg ccctgcagga gaagcatgac gctgaggggc tgagccggct ggcccaggtg
     1861 gtggatgagg cactggcccg ggactttgag ctccgctccg ccagccccca tgcagcctac
     1921 tacggtgtgt ccgacaagaa ccttcggcgg cgcaaggccc actttcagta cctgctcaac
     1981 caccggctgc agatcctctc ccctgtgctg cccgtgagct gcagggaccc acgccagtta
     2041 cagcgcctgc gggacaaact gctctcagtg gccgagcacc gggaaatctt ccccaacctc
     2101 cacagagtac tgcctcggtc ctggcaggtg ctggaggagc tgcacttcca gccccctcag
     2161 gcgcagcggc tctggctcag ctggtgggac tcggctcgcc tgggcctgca ggccggcctg
     2221 accgaggacc ggctgcagag cgccctctcc tacctgcacg agagcggcaa gctgctctac
     2281 tttgaggaca gcccggccct caaggagcac gtcttccaca acctctcccg cctcatcgac
     2341 atcctcaacg tcttcttcca gagggatcct tccttgctgc tgcataagct gctcctgggg
     2401 accagcggcg agggcgaggc tgagagccgg ggtgaaagct ccccgctgat ggcgccgccc
     2461 gccccaagcc aggatgcgct ccgggccacc cagctccatc attatgtgga aggctttctg
     2521 ctgcatgggc tcctgccggc ccacgtcatc cggctgctgc tgaagcctca catccaggct
     2581 cagcaggacc tgcagctcct gctggagctg ctggagaaga tgggactctg ttactgcctc
     2641 aacaaagcca agggcaagcc tctgaatggg tccacggcct ggtacaagtt cccgtgctat
     2701 gtgcagaacg aggtgcccca cgcggaggcc tggattaacg ggaccaacct ggccgggcag
     2761 tcctttgtgg ctgagcagtt gcagattgaa tatagttttc ccttcacctt tccacccagc
     2821 ttgtttgcac gctacagcgt ccagatcaac agccatgtgg tgcacaggtc ggatggcaaa
     2881 cttcagatct ttgcatacag agggaaagtc cctgtggtgg tgagttacag acctgccaag
     2941 ggggtcctgc agccggatac cctgtccatt gccagccacg catccttacc gaacatatgg
     3001 acggcatggc aagccataac ccccttagta gaggaactga atgtcctact tcaggaatgg
     3061 cctggactgc actacactgt acacattctc tgttctaagt gccttaagag agggtcaccc
     3121 aatccacacg ctttcccagg ggagttgctg agtcagccca gaccagaagg cgtggcagag
     3181 atcatttgcc ccaagaatgg cagcgagcga gtgaatgttg ccttggttta cccacccaca
     3241 ccgactgtga tcagcccatg ttccaagaag aacgttggtg aaaagcacag aaaccagtga
     3301 cttttatggc tgtggaattt ccatggagaa aagagcatca gaacgcacct ggaccatctt
     3361 ttgtacccgg aaaaccctcc acactccctg gcgtgttctg tgaatttgag tgcatgtgtg
     3421 ttcagggtgc tttcagggag gaagcacacc tagcctgtag gcaaggtggg gagaggtggg
     3481 gcggggcggg gtgggggggg aagatgagag agaatgtgga gcaaatgttt tacaacctga
     3541 acctcagaac tgtgatcctc caaggagagc gctacttgaa gaaaaaaaaa aaaaaagtcg
     3601 aatggcttct cagggatttt attttccgtg cacatataag ccataattcc agtacaggtg
     3661 gcagtattta gagcactcag atttcagttc tgttaaatgt gaaagagaga tcgactgacc
     3721 attcattgct gttccgtaac tagtgtaaaa tatgtatatg tttatcttta tttttataat
     3781 atgcaaatac atttaaattt atacagtttg aagcttctag agttagttaa cactgggtgc
     3841 aatattctga tgagaactgt gccaagatgg ggctggtttc ttattttagt ataggacctt
     3901 ttgtttattc tttaattctt tgcagattaa aaaaaagata cctatctctc tgcccatgga
     3961 ttaagggttg gttcatagag tctgacgata atcagcaaga actttaaaca tggatttcag
     4021 gtcaggcagt gtccgtcctt ttaaataaag gtccctgcct gtaaactgtt gggcagggta
     4081 ggaggatttt tccttttctt tgcccccaca tatcactagt gttgggcaga gtcttccttg
     4141 ctccaggctt tgtgatgact gtgagttgtt actgggtgat agtctgacgg aggcctgggg
     4201 attaagattc ttcaggggac agggattaag ggatccacaa atccaaggaa aagcagagtt
     4261 ttgtaatagc ttcagataat caggagtcag ttctgaagca tgtaaagagc tctgctaata
     4321 agtcctttct tttctgcccc cagaaaagag tctgtgaaat ttagcagagc actctgaaag
     4381 ccctccacat ctggtgtaag atagcgagtt gcctaactgg agagcgtaag cccacattgg
     4441 ttattttata aatacagagc ctctgattgg atggtctact gccaagaact agtaaaaccc
     4501 tggttttaaa atctctgcga ggtaaaactt aaaaagccaa ccgaccaaac tgctctctct
     4561 tctcctcctc accggggcca aacagcatct gctacaatag taacacattc tttgaagagc
     4621 gtgcctgact ctgtttacat ctgcctcctc tgcgtgttga ctgaaaatgt gtaaaactct
     4681 ttctcacccc tgtgaggcaa gaaaagtgag tcagctggta ttattctttt acttcttctg
     4741 taaagtattg actcttggaa tgccacagta tacgacatcc ccacatattt ttgaaagaag
     4801 taacaagcaa gtagctgcat tgtgaaaaat cgcgaatcaa tttttgtaga ttatcttgtg
     4861 ccccaggagt taactttatt aactccagaa cctcagttaa acaagtatga cttcttataa
     4921 tcataaaatc aaatgggatc agactagttc tgcattttaa tacttgaata ggacacctca
     4981 aattggcatt ttcttttgga acagtcacga gattcacctt gttaatcctt ttgtcacagt
     5041 tctcctgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtaaac tgaatggtaa
     5101 catttaattg ctttatggac cattgaattg ttgggcataa atgttttttc aatcggcaca
     5161 aacagttcct gaatgtcaaa ttaaccgact ttgaccagga aaagacttgt aaatgacttc
     5221 aggctaactc cccaggggat catattaaat gaaaataaaa aagctccttt gggtgacata
     5281 ccctgcaaag tatgtgctct tgtcatgaac atagatgccc acattcttaa tatctgctat
     5341 ttttggacaa gtgatgtttt gtgctgtcat ctgaacccta gagaagcagt ataagaagaa
     5401 agtttggtgt cacatatatt ttagcaaaaa ggtcatcatg atagagggtc atgtgaccaa
     5461 aagcagctcc agaaaagctt gagaacttgc ttcacggttg ggggagggtc ggagatacag
     5521 aaaacattct gctctatagg aattttcttc atttatgcag gaaattccat tttctctttc
     5581 aacacctggg aagactcagc cggggaggct gacaggcaat tcataagcac agggggaatc
     5641 tcttccaacc aagacgtccc tgcctcgcaa acaaaagccc tccaagtttg ttatggtttc
     5701 tattcctgca tcttgtggta tcaaaaccac ttcctggaat tgtaaaagcg ctgccagaat
     5761 aaatgttttt ccctcttcca agaaaaaacg acagtgctta tatttcacac ttgtgcactg
     5821 gactcttttg aatgaataaa atggaaaggg tttggtgtca ttcctgatga ggtgtgtgtt
     5881 ctctttcatg ccacagtttg tgaattgtaa ttgtggtttc ctatttaatt gtcataacca
     5941 ggcagaaatt taaaaaaaaa acaacaaaaa agtttaataa aaacacaaag aaatggttaa
     6001 gcagttata
//
LOCUS       XM_032618376            3598 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus malignant fibrous histiocytoma amplified
            sequence 1 (MFHAS1), transcript variant X2, mRNA.
ACCESSION   XM_032618376
VERSION     XM_032618376.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3598
                     /gene="MFHAS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746736"
     CDS             142..3294
                     /gene="MFHAS1"
                     /codon_start=1
                     /product="malignant fibrous histiocytoma-amplified
                     sequence 1 isoform X2"
                     /protein_id="XP_032474267.1"
                     /db_xref="GeneID:116746736"
                     /translation="MAGTDSGNLKTVRLWRDAALRARKLRSNLRQLSLSAAGGCPGTD
                     QLDSPDAPQLVLPANIGDIEVLNLGNNGLEEVPDGLGSALGSLRVLVLRRNRFARLPP
                     AVAELGHHLTELDVSHNRLSVLSAEVVSALRELRKLNLSHNQLPALPAQLGALVHLEE
                     LDVSFNRLAHLPDSLSCLSRLRTLDVDHNQLTAFPWQLLQLAALEELDVSSNRLRGLP
                     EDISALRALKILWLSGTELGTLPSGFCELASLESLMLDNNGLQALPAQFSRLQRLKML
                     NLSSNLLEEFPAALLPLAGLEELYLSRNQLTSVPSLISGLGRLLTLWLDNNRLRYLPD
                     SIVELTGLEELVLQGNQIAVLPDNFGRLSRVGLWKIRDNPLIQPPYEVCMKGIPYIAA
                     YQKELAHSQPAVQPRLKLLLMGHKAAGKTLLRRCLTEDRVEGNQGGGDKEKSHPPSPP
                     PASKGIEVTSWTADASRGLRFIVYDLAGDDSYEVIQPFFLSPGALYVLVVNLATYEPL
                     RFPTTVGSFLHRVGARVPHAVVCVVGTHADLCGEQELEEKCLDIHRQIALQEKHDAEG
                     LSRLAQVVDEALARDFELRSASPHAAYYGVSDKNLRRRKAHFQYLLNHRLQILSPVLP
                     VSCRDPRQLQRLRDKLLSVAEHREIFPNLHRVLPRSWQVLEELHFQPPQAQRLWLSWW
                     DSARLGLQAGLTEDRLQSALSYLHESGKLLYFEDSPALKEHVFHNLSRLIDILNVFFQ
                     RDPSLLLHKLLLGTSGEGEAESRGESSPLMAPPAPSQDALRATQLHHYVEGFLLHGLL
                     PAHVIRLLLKPHIQAQQDLQLLLELLEKMGLCYCLNKAKGKPLNGSTAWYKFPCYVQN
                     EVPHAEAWINGTNLAGQSFVAEQLQIEYSFPFTFPPSLFARYSVQINSHVVHRSDGKL
                     QIFAYRGKVPVVVSYRPAKGVLQPDTLSIASHASLPNIWTAWQAITPLVEELNVLLQE
                     WPGLHYTVHILCSKCLKRGSPNPHAFPGELLSQPRPEGVAEIICPKNGSERVNVALVY
                     PPTPTVISPCSKYLHTFLDN"
     misc_feature    <328..606
                     /gene="MFHAS1"
                     /note="hypothetical protein; Provisional; Region:
                     PLN03150"
                     /db_xref="CDD:178695"
     misc_feature    328..399
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    400..471
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <472..>1251
                     /gene="MFHAS1"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    472..543
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    544..612
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    613..681
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    682..819
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    820..888
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    889..957
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    958..1026
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1027..1095
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1096..1164
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1165..1227
                     /gene="MFHAS1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1360..>1791
                     /gene="MFHAS1"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; Region: P-loop
                     containing Nucleoside Triphosphate Hydrolases; cl38936"
                     /db_xref="CDD:476819"
     misc_feature    1381..1404
                     /gene="MFHAS1"
                     /note="G1 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    1498..1500
                     /gene="MFHAS1"
                     /note="G2 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    1510..1518
                     /gene="MFHAS1"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206648"
     misc_feature    1564..1575
                     /gene="MFHAS1"
                     /note="G3 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    order(1570..1575,1621..1626)
                     /gene="MFHAS1"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206648"
     misc_feature    1744..1755
                     /gene="MFHAS1"
                     /note="G4 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    2113..>2340
                     /gene="MFHAS1"
                     /note="C-terminal of Roc, COR, domain; Region: COR;
                     pfam16095"
                     /db_xref="CDD:406489"
ORIGIN      
        1 aggacccgcc gccgccggtc gccgagggct ggtaggaagg gaggagcggg agcgaaaggg
       61 ccccggagac tggcgcccgc cggggcgcag cgcggcatgt agctgcgggc tcccgcgcga
      121 gggtgtcggc ccggccccgc catggctggg acggacagcg ggaacctgaa gacggtgagg
      181 ctgtggcggg acgccgccct gcgcgccagg aagctgcgga gcaacctgcg ccagctcagc
      241 ctcagcgcgg ccgggggctg cccggggacc gaccagctcg actctcccga cgcgccccag
      301 cttgtgctgc cggccaacat cggggacatt gaggtgctga acctggggaa caacggcctg
      361 gaggaggtgc ccgacgggct gggctcggcg ctgggcagcc tccgcgtcct ggtcctgcgc
      421 cggaaccgct tcgcccggct gcccccagcg gtggccgagc tgggccatca cctaaccgag
      481 ctggacgtga gccacaaccg gctgagcgtc ctaagcgccg aggtggtgag cgccctgcgc
      541 gagctgagga agctcaacct cagccacaac cagctgcccg ccctgcccgc ccagctgggt
      601 gcgctggtcc acctggagga gctggacgtc agctttaacc gcctggcgca cctgcccgac
      661 tccctctcct gcctctcccg cctgcgcacc ctcgacgtgg accacaacca gctcacggct
      721 tttccgtggc agctgctgca gctggcggcc ctggaggagc tcgacgtgtc cagcaaccgg
      781 ctgcggggcc tacctgagga tatcagtgcc ctgcgtgccc tcaagatcct ctggctgagc
      841 gggaccgagc ttggcaccct gcccagcggc ttctgcgagc tggccagcct ggagagcctc
      901 atgctggaca acaacgggct gcaggcttta cccgcccagt tcagccgcct gcagcgactc
      961 aagatgctca acctctcttc caacctcttg gaggagttcc ctgccgcgct gctgcccctg
     1021 gctggtctgg aggagctcta ccttagtcgc aaccagctca cttctgtgcc gtccctgatc
     1081 tcgggcctgg gccgtcttct caccctgtgg ctggataata accggctccg ctacctgcct
     1141 gattccatcg tggagctcac gggcctggag gagctggtcc tgcaggggaa ccagatcgct
     1201 gtgctgccag acaactttgg ccggctctcc cgggtgggcc tgtggaagat cagggacaac
     1261 ccgctgatcc agccccccta cgaggtctgt atgaagggca tcccctacat cgcagcttac
     1321 cagaaggagc tggctcattc ccagccggcg gtccagcccc gcctcaagct gctcctgatg
     1381 ggccataaag ctgcgggaaa gaccctgctc cgtcgctgcc tgaccgagga cagagtggag
     1441 gggaaccaag gaggagggga caaggagaag agccacccgc cttcacctcc tcccgcgagc
     1501 aagggcatcg aggtgaccag ctggacagcg gatgcctccc ggggcctgcg gttcatcgtg
     1561 tatgacttag ctggggatga cagttatgag gtgattcagc ccttcttcct ctccccgggg
     1621 gccctttatg tgctggtggt gaacttggcc acctatgagc cgctccgctt tcccaccacc
     1681 gtgggctcct tcctgcatcg ggtaggggcc cgggtgcctc acgccgtggt gtgcgttgtg
     1741 ggcacgcacg ccgacctctg cggggagcag gagctggagg agaagtgtct ggacatccac
     1801 cgccagatcg ccctgcagga gaagcatgac gctgaggggc tgagccggct ggcccaggtg
     1861 gtggatgagg cactggcccg ggactttgag ctccgctccg ccagccccca tgcagcctac
     1921 tacggtgtgt ccgacaagaa ccttcggcgg cgcaaggccc actttcagta cctgctcaac
     1981 caccggctgc agatcctctc ccctgtgctg cccgtgagct gcagggaccc acgccagtta
     2041 cagcgcctgc gggacaaact gctctcagtg gccgagcacc gggaaatctt ccccaacctc
     2101 cacagagtac tgcctcggtc ctggcaggtg ctggaggagc tgcacttcca gccccctcag
     2161 gcgcagcggc tctggctcag ctggtgggac tcggctcgcc tgggcctgca ggccggcctg
     2221 accgaggacc ggctgcagag cgccctctcc tacctgcacg agagcggcaa gctgctctac
     2281 tttgaggaca gcccggccct caaggagcac gtcttccaca acctctcccg cctcatcgac
     2341 atcctcaacg tcttcttcca gagggatcct tccttgctgc tgcataagct gctcctgggg
     2401 accagcggcg agggcgaggc tgagagccgg ggtgaaagct ccccgctgat ggcgccgccc
     2461 gccccaagcc aggatgcgct ccgggccacc cagctccatc attatgtgga aggctttctg
     2521 ctgcatgggc tcctgccggc ccacgtcatc cggctgctgc tgaagcctca catccaggct
     2581 cagcaggacc tgcagctcct gctggagctg ctggagaaga tgggactctg ttactgcctc
     2641 aacaaagcca agggcaagcc tctgaatggg tccacggcct ggtacaagtt cccgtgctat
     2701 gtgcagaacg aggtgcccca cgcggaggcc tggattaacg ggaccaacct ggccgggcag
     2761 tcctttgtgg ctgagcagtt gcagattgaa tatagttttc ccttcacctt tccacccagc
     2821 ttgtttgcac gctacagcgt ccagatcaac agccatgtgg tgcacaggtc ggatggcaaa
     2881 cttcagatct ttgcatacag agggaaagtc cctgtggtgg tgagttacag acctgccaag
     2941 ggggtcctgc agccggatac cctgtccatt gccagccacg catccttacc gaacatatgg
     3001 acggcatggc aagccataac ccccttagta gaggaactga atgtcctact tcaggaatgg
     3061 cctggactgc actacactgt acacattctc tgttctaagt gccttaagag agggtcaccc
     3121 aatccacacg ctttcccagg ggagttgctg agtcagccca gaccagaagg cgtggcagag
     3181 atcatttgcc ccaagaatgg cagcgagcga gtgaatgttg ccttggttta cccacccaca
     3241 ccgactgtga tcagcccatg ttccaagtat ctccatactt tcttggacaa ttaagtggaa
     3301 aagatagtgc ttctttccct tatgccatca tttttactgt gcccaatctg tgactttagg
     3361 agcaccaatt tttaagggaa gaacgttggt gaaaagcaca gaaaccagtg acttttatgg
     3421 ctgtggaatt tccatggaga aaagagcatc agaacgcacc tggaccatct tttgtacccg
     3481 gaaaaccctc cacactccct ggcgtgttct gtgaatttga gtgcatgtgt gttcagggtg
     3541 ctttcaggga ggaagcacac ctagcctgta ggcaagtgca gccgaacttt tcatacaa
//
LOCUS       XM_032618377            3164 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 4A (SH2D4A),
            transcript variant X1, mRNA.
ACCESSION   XM_032618377
VERSION     XM_032618377.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3164
                     /gene="SH2D4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746737"
     CDS             655..2007
                     /gene="SH2D4A"
                     /codon_start=1
                     /product="SH2 domain-containing protein 4A"
                     /protein_id="XP_032474268.1"
                     /db_xref="GeneID:116746737"
                     /translation="MLKQILSEMYIDPDLLAELSEEQKQILFFKMREEQVRRWKEREA
                     AMEKQESLPVKPRPKKDNGKSVHWKLGADEEVWVWVMGEHHLDKPYDTLCDEILAQRA
                     RLKSGQEVRELRKTQSREFTSSLKPKSHSSDVRAPGDREPRSVCEKAAEEGGHGRGRG
                     PASPLEEQKTPLPSSSSRSVHQMLADSISRMKEYGFHQKKESVKKTQDEEVKQIDEER
                     TKQIYKSWKEDSEWQASLRKSKAADERRRSLAKQAREDYKRLSQRGRGGEGPLSPPGG
                     PQKPRRPPLPPKPQFLSPSGHPCRPLRNQAAARPASRSAHGDIVRWFREEQLPLRAGY
                     LGTSDSIAPWFHGILTVQRANELLSTCVPGSFLIRVSERIKGYVLSYLSKDGCKHFLI
                     DASTDSYSFLGADQLQHASLADLVEYHKEEPITSLGKELLLYPCGQQEQPPDYQGLFE
                     "
     misc_feature    1663..1968
                     /gene="SH2D4A"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(1705..1707,1759..1761,1819..1821,1825..1827)
                     /gene="SH2D4A"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(1822..1824,1906..1908)
                     /gene="SH2D4A"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 ccctccaacg tttccgctct gcttctgctg aactgtcctc ccagatttcc ttctccgtcc
       61 gcagccagct cctcctccgt gcgacacccc gacctggcct ggccacagtc cacggccttc
      121 ctttaccctc tttccttctc gccgcgtttc tttcattttc tcccctctct ccgctgtctt
      181 catcttttcc aacctttctc ctccttggtc ctggctccct acgaagccac acccatacgg
      241 acaagcgcca gagagtttga taatttactt caggtcaaca aaagggaaag aaacaaaaaa
      301 aaagtgagct ccagcgacgc catagcagaa gctcagcccg tgcagctgag aaggtcccgc
      361 ccgcctgcct gggccccacc tgccaggacg cccggcgccc ggccgggacc tgccgcggcc
      421 cgcgggacac gcgtggaggg atgagccccg gcggccgcag gttcatgagt ggcgttttgg
      481 acaggatgct tggtgccagg aacccagagc cagtttgttg aattactgtc ccagcccctc
      541 gagtctcggg gaaggtctgt gggtgcctcc cagggccagc ccaggtgaag gcagccctgg
      601 aaaccatttt caagaacttt tgccacaggt gtaaaagact ccacccttgc aaagatgctg
      661 aaacagatac tgtcggagat gtacatagat cctgatctgc tggcagagct cagcgaagaa
      721 cagaaacaga tcctgttctt caagatgagg gaggagcagg tccgccgatg gaaagaaaga
      781 gaagcagcaa tggaaaaaca ggagtccttg ccagtgaaac ccagaccaaa gaaagacaac
      841 ggcaaatcgg ttcattggaa actgggagcc gacgaggaag tctgggtgtg ggtgatgggt
      901 gagcaccacc tcgataaacc ctacgacacg ctctgtgatg agatccttgc ccagagggca
      961 cggctgaagt cggggcagga ggtgcgggag ctcagaaaaa ctcagtccag agaattcacc
     1021 agcagcttga aaccaaagtc acactcctcc gatgtgcggg caccaggtga ccgggagcct
     1081 cggagcgtgt gtgagaaggc ggcagaagag gggggacacg ggcgcggccg cgggccagct
     1141 tcacccctag aagagcagaa aacgcccttg ccctccagtt cctcaagaag tgttcaccaa
     1201 atgttggcag attctatcag tcgtatgaag gaatatggat ttcaccagaa gaaagaatct
     1261 gtgaagaaaa cacaagatga agaagtaaaa caaatagatg aagagagaac caagcagatt
     1321 tataagagct ggaaagaaga ttcggagtgg caggcctctt tgcgaaaatc caaggcagct
     1381 gatgagagga ggcgctccct ggcaaaacag gcgcgggagg actacaagag gctgtcccag
     1441 agggggagag gcggcgaggg gccactgagc ccccccggcg gcccccagaa gcctcggagg
     1501 cccccccttc cacccaagcc tcagttcctg agcccttcgg gacacccctg cagacctctc
     1561 agaaaccagg cagcggcaag gccagcgtcc cgctcggccc atggggacat cgtgcgctgg
     1621 ttccgggagg agcagctccc gctgcgggcc ggctacctgg gcacctcgga cagcatcgcc
     1681 ccatggttcc acggaattct caccgtacag agagcgaatg agcttctgag cacgtgcgtg
     1741 ccaggcagct ttctgatccg ggtcagcgag aggatcaagg gctacgtcct gtcctatctg
     1801 tccaaggacg gctgcaaaca cttcctcata gatgcctcca cggactcgta cagcttcctg
     1861 ggtgcagacc agctgcagca cgccagcctg gctgacttgg tggagtacca caaggaggaa
     1921 cccatcacct ccctggggaa ggagctcctt ctgtacccct gcggtcagca ggaacagcca
     1981 cccgactacc agggcctgtt tgagtgacag cgtcatcgtg tcgtcctgca gccgccagct
     2041 ggccgtcctc tggacagaca gacaccgcgg agatggacac ttgtgtagga agccacatcg
     2101 ccctgcagcg agccgatcct gatcaagtga aaggaccctt gggggtccca tggcgacctg
     2161 tcttttgcac agatgctgga gtttaattaa cgctaagagg gaatcacctc tgcgttgtac
     2221 gcaccccagc agtaaaggga gaagaacccc catctccgca gctcccaaca tgaaggctac
     2281 aaccctagtg atgtatggaa taaacgaaga agaaattgga accttttagg aattaagggg
     2341 cacctcaaaa ccagaagtcc tccatggcct tggcactccc tctctgcctc atctcggaag
     2401 gtcttggggt cctgttccta tgaagttcct cggtggcgtc agggactgac gaaagagcct
     2461 gcactggtgg ctgagcccac ggccctgcac acctcacttg tggtgcatgt gtgggccagg
     2521 gtgtaagaca cacagggaac acaagttgcg ggtgttgtga actgaatgag gagtttgaag
     2581 gtgtaggacg agagccttca catgtacaga aatactccag acgatggcgg ggggtgaggg
     2641 gacctgtgtg agcggttcgc tggctctggg gagcggggca gggctctacc caggacctcg
     2701 ccgaggacgg tgaagccaca tgcgtgcctt ggatagacaa gggcagaaga gtgagctttg
     2761 cggacactag gtgctgtggg tcgagtcccc caaagagaca ttgaagtcct aaccccctgc
     2821 acctgtgaac gtggccttat ttggaaacag ggtctttgcg gatgtgatca aattaagacg
     2881 aggtcaggcc agattagggc gggccccaaa accaacgacg ggcgtcctta taaggagaga
     2941 ggggttggga agttgaggtg cgcacgcaga ggggatggca gccaggggac aacagaggca
     3001 gggccccaag tgacaagccg caagccaggg gacgccgggg gccggggggg ggcagcatgg
     3061 agcagactcc ccagagccct ggaggggagc atggccctgc ggacacctcg attccagact
     3121 tgtagcctcc agaactatga cagaataaat gtcttttgtc ttaa
//
LOCUS       XM_032618378            3007 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 4A (SH2D4A),
            transcript variant X2, mRNA.
ACCESSION   XM_032618378
VERSION     XM_032618378.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3007
                     /gene="SH2D4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746737"
     CDS             498..1850
                     /gene="SH2D4A"
                     /codon_start=1
                     /product="SH2 domain-containing protein 4A"
                     /protein_id="XP_032474269.1"
                     /db_xref="GeneID:116746737"
                     /translation="MLKQILSEMYIDPDLLAELSEEQKQILFFKMREEQVRRWKEREA
                     AMEKQESLPVKPRPKKDNGKSVHWKLGADEEVWVWVMGEHHLDKPYDTLCDEILAQRA
                     RLKSGQEVRELRKTQSREFTSSLKPKSHSSDVRAPGDREPRSVCEKAAEEGGHGRGRG
                     PASPLEEQKTPLPSSSSRSVHQMLADSISRMKEYGFHQKKESVKKTQDEEVKQIDEER
                     TKQIYKSWKEDSEWQASLRKSKAADERRRSLAKQAREDYKRLSQRGRGGEGPLSPPGG
                     PQKPRRPPLPPKPQFLSPSGHPCRPLRNQAAARPASRSAHGDIVRWFREEQLPLRAGY
                     LGTSDSIAPWFHGILTVQRANELLSTCVPGSFLIRVSERIKGYVLSYLSKDGCKHFLI
                     DASTDSYSFLGADQLQHASLADLVEYHKEEPITSLGKELLLYPCGQQEQPPDYQGLFE
                     "
     misc_feature    1506..1811
                     /gene="SH2D4A"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(1548..1550,1602..1604,1662..1664,1668..1670)
                     /gene="SH2D4A"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(1665..1667,1749..1751)
                     /gene="SH2D4A"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 ccctccaacg tttccgctct gcttctgctg aactgtcctc ccagatttcc ttctccgtcc
       61 gcagccagct cctcctccgt gcgacacccc gacctggcct ggccacagtc cacggccttc
      121 ctttaccctc tttccttctc gccgcgtttc tttcattttc tcccctctct ccgctgtctt
      181 catcttttcc aacctttctc ctccttggtc ctggctccct acgaagccac acccatacgg
      241 acaagcgcca gagagtttga taatttactt caggtcaaca aaagggaaag aaacaaaaaa
      301 aaagttcatg agtggcgttt tggacaggat gcttggtgcc aggaacccag agccagtttg
      361 ttgaattact gtcccagccc ctcgagtctc ggggaaggtc tgtgggtgcc tcccagggcc
      421 agcccaggtg aaggcagccc tggaaaccat tttcaagaac ttttgccaca ggtgtaaaag
      481 actccaccct tgcaaagatg ctgaaacaga tactgtcgga gatgtacata gatcctgatc
      541 tgctggcaga gctcagcgaa gaacagaaac agatcctgtt cttcaagatg agggaggagc
      601 aggtccgccg atggaaagaa agagaagcag caatggaaaa acaggagtcc ttgccagtga
      661 aacccagacc aaagaaagac aacggcaaat cggttcattg gaaactggga gccgacgagg
      721 aagtctgggt gtgggtgatg ggtgagcacc acctcgataa accctacgac acgctctgtg
      781 atgagatcct tgcccagagg gcacggctga agtcggggca ggaggtgcgg gagctcagaa
      841 aaactcagtc cagagaattc accagcagct tgaaaccaaa gtcacactcc tccgatgtgc
      901 gggcaccagg tgaccgggag cctcggagcg tgtgtgagaa ggcggcagaa gaggggggac
      961 acgggcgcgg ccgcgggcca gcttcacccc tagaagagca gaaaacgccc ttgccctcca
     1021 gttcctcaag aagtgttcac caaatgttgg cagattctat cagtcgtatg aaggaatatg
     1081 gatttcacca gaagaaagaa tctgtgaaga aaacacaaga tgaagaagta aaacaaatag
     1141 atgaagagag aaccaagcag atttataaga gctggaaaga agattcggag tggcaggcct
     1201 ctttgcgaaa atccaaggca gctgatgaga ggaggcgctc cctggcaaaa caggcgcggg
     1261 aggactacaa gaggctgtcc cagaggggga gaggcggcga ggggccactg agcccccccg
     1321 gcggccccca gaagcctcgg aggccccccc ttccacccaa gcctcagttc ctgagccctt
     1381 cgggacaccc ctgcagacct ctcagaaacc aggcagcggc aaggccagcg tcccgctcgg
     1441 cccatgggga catcgtgcgc tggttccggg aggagcagct cccgctgcgg gccggctacc
     1501 tgggcacctc ggacagcatc gccccatggt tccacggaat tctcaccgta cagagagcga
     1561 atgagcttct gagcacgtgc gtgccaggca gctttctgat ccgggtcagc gagaggatca
     1621 agggctacgt cctgtcctat ctgtccaagg acggctgcaa acacttcctc atagatgcct
     1681 ccacggactc gtacagcttc ctgggtgcag accagctgca gcacgccagc ctggctgact
     1741 tggtggagta ccacaaggag gaacccatca cctccctggg gaaggagctc cttctgtacc
     1801 cctgcggtca gcaggaacag ccacccgact accagggcct gtttgagtga cagcgtcatc
     1861 gtgtcgtcct gcagccgcca gctggccgtc ctctggacag acagacaccg cggagatgga
     1921 cacttgtgta ggaagccaca tcgccctgca gcgagccgat cctgatcaag tgaaaggacc
     1981 cttgggggtc ccatggcgac ctgtcttttg cacagatgct ggagtttaat taacgctaag
     2041 agggaatcac ctctgcgttg tacgcacccc agcagtaaag ggagaagaac ccccatctcc
     2101 gcagctccca acatgaaggc tacaacccta gtgatgtatg gaataaacga agaagaaatt
     2161 ggaacctttt aggaattaag gggcacctca aaaccagaag tcctccatgg ccttggcact
     2221 ccctctctgc ctcatctcgg aaggtcttgg ggtcctgttc ctatgaagtt cctcggtggc
     2281 gtcagggact gacgaaagag cctgcactgg tggctgagcc cacggccctg cacacctcac
     2341 ttgtggtgca tgtgtgggcc agggtgtaag acacacaggg aacacaagtt gcgggtgttg
     2401 tgaactgaat gaggagtttg aaggtgtagg acgagagcct tcacatgtac agaaatactc
     2461 cagacgatgg cggggggtga ggggacctgt gtgagcggtt cgctggctct ggggagcggg
     2521 gcagggctct acccaggacc tcgccgagga cggtgaagcc acatgcgtgc cttggataga
     2581 caagggcaga agagtgagct ttgcggacac taggtgctgt gggtcgagtc ccccaaagag
     2641 acattgaagt cctaaccccc tgcacctgtg aacgtggcct tatttggaaa cagggtcttt
     2701 gcggatgtga tcaaattaag acgaggtcag gccagattag ggcgggcccc aaaaccaacg
     2761 acgggcgtcc ttataaggag agaggggttg ggaagttgag gtgcgcacgc agaggggatg
     2821 gcagccaggg gacaacagag gcagggcccc aagtgacaag ccgcaagcca ggggacgccg
     2881 ggggccgggg gggggcagca tggagcagac tccccagagc cctggagggg agcatggccc
     2941 tgcggacacc tcgattccag acttgtagcc tccagaacta tgacagaata aatgtctttt
     3001 gtcttaa
//
LOCUS       XM_032618379            2873 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 4A (SH2D4A),
            transcript variant X3, mRNA.
ACCESSION   XM_032618379
VERSION     XM_032618379.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2873
                     /gene="SH2D4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746737"
     CDS             364..1716
                     /gene="SH2D4A"
                     /codon_start=1
                     /product="SH2 domain-containing protein 4A"
                     /protein_id="XP_032474270.1"
                     /db_xref="GeneID:116746737"
                     /translation="MLKQILSEMYIDPDLLAELSEEQKQILFFKMREEQVRRWKEREA
                     AMEKQESLPVKPRPKKDNGKSVHWKLGADEEVWVWVMGEHHLDKPYDTLCDEILAQRA
                     RLKSGQEVRELRKTQSREFTSSLKPKSHSSDVRAPGDREPRSVCEKAAEEGGHGRGRG
                     PASPLEEQKTPLPSSSSRSVHQMLADSISRMKEYGFHQKKESVKKTQDEEVKQIDEER
                     TKQIYKSWKEDSEWQASLRKSKAADERRRSLAKQAREDYKRLSQRGRGGEGPLSPPGG
                     PQKPRRPPLPPKPQFLSPSGHPCRPLRNQAAARPASRSAHGDIVRWFREEQLPLRAGY
                     LGTSDSIAPWFHGILTVQRANELLSTCVPGSFLIRVSERIKGYVLSYLSKDGCKHFLI
                     DASTDSYSFLGADQLQHASLADLVEYHKEEPITSLGKELLLYPCGQQEQPPDYQGLFE
                     "
     misc_feature    1372..1677
                     /gene="SH2D4A"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(1414..1416,1468..1470,1528..1530,1534..1536)
                     /gene="SH2D4A"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(1531..1533,1615..1617)
                     /gene="SH2D4A"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 agcagtggga accaaaccca accagaaatt cttccctgat aggatcccta gaatagttct
       61 taaatagctc ctagggagtc ctgacctctg cctccaggtt ctacctttga gtatcttctg
      121 aggtctggag aggctagaaa tgggtttcat ttctgaagga gcaagtcagg ttcatgagtg
      181 gcgttttgga caggatgctt ggtgccagga acccagagcc agtttgttga attactgtcc
      241 cagcccctcg agtctcgggg aaggtctgtg ggtgcctccc agggccagcc caggtgaagg
      301 cagccctgga aaccattttc aagaactttt gccacaggtg taaaagactc cacccttgca
      361 aagatgctga aacagatact gtcggagatg tacatagatc ctgatctgct ggcagagctc
      421 agcgaagaac agaaacagat cctgttcttc aagatgaggg aggagcaggt ccgccgatgg
      481 aaagaaagag aagcagcaat ggaaaaacag gagtccttgc cagtgaaacc cagaccaaag
      541 aaagacaacg gcaaatcggt tcattggaaa ctgggagccg acgaggaagt ctgggtgtgg
      601 gtgatgggtg agcaccacct cgataaaccc tacgacacgc tctgtgatga gatccttgcc
      661 cagagggcac ggctgaagtc ggggcaggag gtgcgggagc tcagaaaaac tcagtccaga
      721 gaattcacca gcagcttgaa accaaagtca cactcctccg atgtgcgggc accaggtgac
      781 cgggagcctc ggagcgtgtg tgagaaggcg gcagaagagg ggggacacgg gcgcggccgc
      841 gggccagctt cacccctaga agagcagaaa acgcccttgc cctccagttc ctcaagaagt
      901 gttcaccaaa tgttggcaga ttctatcagt cgtatgaagg aatatggatt tcaccagaag
      961 aaagaatctg tgaagaaaac acaagatgaa gaagtaaaac aaatagatga agagagaacc
     1021 aagcagattt ataagagctg gaaagaagat tcggagtggc aggcctcttt gcgaaaatcc
     1081 aaggcagctg atgagaggag gcgctccctg gcaaaacagg cgcgggagga ctacaagagg
     1141 ctgtcccaga gggggagagg cggcgagggg ccactgagcc cccccggcgg cccccagaag
     1201 cctcggaggc ccccccttcc acccaagcct cagttcctga gcccttcggg acacccctgc
     1261 agacctctca gaaaccaggc agcggcaagg ccagcgtccc gctcggccca tggggacatc
     1321 gtgcgctggt tccgggagga gcagctcccg ctgcgggccg gctacctggg cacctcggac
     1381 agcatcgccc catggttcca cggaattctc accgtacaga gagcgaatga gcttctgagc
     1441 acgtgcgtgc caggcagctt tctgatccgg gtcagcgaga ggatcaaggg ctacgtcctg
     1501 tcctatctgt ccaaggacgg ctgcaaacac ttcctcatag atgcctccac ggactcgtac
     1561 agcttcctgg gtgcagacca gctgcagcac gccagcctgg ctgacttggt ggagtaccac
     1621 aaggaggaac ccatcacctc cctggggaag gagctccttc tgtacccctg cggtcagcag
     1681 gaacagccac ccgactacca gggcctgttt gagtgacagc gtcatcgtgt cgtcctgcag
     1741 ccgccagctg gccgtcctct ggacagacag acaccgcgga gatggacact tgtgtaggaa
     1801 gccacatcgc cctgcagcga gccgatcctg atcaagtgaa aggacccttg ggggtcccat
     1861 ggcgacctgt cttttgcaca gatgctggag tttaattaac gctaagaggg aatcacctct
     1921 gcgttgtacg caccccagca gtaaagggag aagaaccccc atctccgcag ctcccaacat
     1981 gaaggctaca accctagtga tgtatggaat aaacgaagaa gaaattggaa ccttttagga
     2041 attaaggggc acctcaaaac cagaagtcct ccatggcctt ggcactccct ctctgcctca
     2101 tctcggaagg tcttggggtc ctgttcctat gaagttcctc ggtggcgtca gggactgacg
     2161 aaagagcctg cactggtggc tgagcccacg gccctgcaca cctcacttgt ggtgcatgtg
     2221 tgggccaggg tgtaagacac acagggaaca caagttgcgg gtgttgtgaa ctgaatgagg
     2281 agtttgaagg tgtaggacga gagccttcac atgtacagaa atactccaga cgatggcggg
     2341 gggtgagggg acctgtgtga gcggttcgct ggctctgggg agcggggcag ggctctaccc
     2401 aggacctcgc cgaggacggt gaagccacat gcgtgccttg gatagacaag ggcagaagag
     2461 tgagctttgc ggacactagg tgctgtgggt cgagtccccc aaagagacat tgaagtccta
     2521 accccctgca cctgtgaacg tggccttatt tggaaacagg gtctttgcgg atgtgatcaa
     2581 attaagacga ggtcaggcca gattagggcg ggccccaaaa ccaacgacgg gcgtccttat
     2641 aaggagagag gggttgggaa gttgaggtgc gcacgcagag gggatggcag ccaggggaca
     2701 acagaggcag ggccccaagt gacaagccgc aagccagggg acgccggggg ccgggggggg
     2761 gcagcatgga gcagactccc cagagccctg gaggggagca tggccctgcg gacacctcga
     2821 ttccagactt gtagcctcca gaactatgac agaataaatg tcttttgtct taa
//
LOCUS       XM_032618380            2895 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 4A (SH2D4A),
            transcript variant X4, mRNA.
ACCESSION   XM_032618380
VERSION     XM_032618380.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2895
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2895
                     /gene="SH2D4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746737"
     CDS             386..1738
                     /gene="SH2D4A"
                     /codon_start=1
                     /product="SH2 domain-containing protein 4A"
                     /protein_id="XP_032474271.1"
                     /db_xref="GeneID:116746737"
                     /translation="MLKQILSEMYIDPDLLAELSEEQKQILFFKMREEQVRRWKEREA
                     AMEKQESLPVKPRPKKDNGKSVHWKLGADEEVWVWVMGEHHLDKPYDTLCDEILAQRA
                     RLKSGQEVRELRKTQSREFTSSLKPKSHSSDVRAPGDREPRSVCEKAAEEGGHGRGRG
                     PASPLEEQKTPLPSSSSRSVHQMLADSISRMKEYGFHQKKESVKKTQDEEVKQIDEER
                     TKQIYKSWKEDSEWQASLRKSKAADERRRSLAKQAREDYKRLSQRGRGGEGPLSPPGG
                     PQKPRRPPLPPKPQFLSPSGHPCRPLRNQAAARPASRSAHGDIVRWFREEQLPLRAGY
                     LGTSDSIAPWFHGILTVQRANELLSTCVPGSFLIRVSERIKGYVLSYLSKDGCKHFLI
                     DASTDSYSFLGADQLQHASLADLVEYHKEEPITSLGKELLLYPCGQQEQPPDYQGLFE
                     "
     misc_feature    1394..1699
                     /gene="SH2D4A"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(1436..1438,1490..1492,1550..1552,1556..1558)
                     /gene="SH2D4A"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(1553..1555,1637..1639)
                     /gene="SH2D4A"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 gaggcggccg ggaagggccg ggaggagcca gcgagcgcgg gggttcccgc gggtccgggt
       61 cccgccggcc ggccccacgc tcctccgccc ggcgggctca ggtgccggcg gagcggtgtc
      121 cggtgtcggg tgtccggtgt cgcagcaacg gcgggagagc tgcggcgccg agggccaggc
      181 cggtggtcgt ggttcatgag tggcgttttg gacaggatgc ttggtgccag gaacccagag
      241 ccagtttgtt gaattactgt cccagcccct cgagtctcgg ggaaggtctg tgggtgcctc
      301 ccagggccag cccaggtgaa ggcagccctg gaaaccattt tcaagaactt ttgccacagg
      361 tgtaaaagac tccacccttg caaagatgct gaaacagata ctgtcggaga tgtacataga
      421 tcctgatctg ctggcagagc tcagcgaaga acagaaacag atcctgttct tcaagatgag
      481 ggaggagcag gtccgccgat ggaaagaaag agaagcagca atggaaaaac aggagtcctt
      541 gccagtgaaa cccagaccaa agaaagacaa cggcaaatcg gttcattgga aactgggagc
      601 cgacgaggaa gtctgggtgt gggtgatggg tgagcaccac ctcgataaac cctacgacac
      661 gctctgtgat gagatccttg cccagagggc acggctgaag tcggggcagg aggtgcggga
      721 gctcagaaaa actcagtcca gagaattcac cagcagcttg aaaccaaagt cacactcctc
      781 cgatgtgcgg gcaccaggtg accgggagcc tcggagcgtg tgtgagaagg cggcagaaga
      841 ggggggacac gggcgcggcc gcgggccagc ttcaccccta gaagagcaga aaacgccctt
      901 gccctccagt tcctcaagaa gtgttcacca aatgttggca gattctatca gtcgtatgaa
      961 ggaatatgga tttcaccaga agaaagaatc tgtgaagaaa acacaagatg aagaagtaaa
     1021 acaaatagat gaagagagaa ccaagcagat ttataagagc tggaaagaag attcggagtg
     1081 gcaggcctct ttgcgaaaat ccaaggcagc tgatgagagg aggcgctccc tggcaaaaca
     1141 ggcgcgggag gactacaaga ggctgtccca gagggggaga ggcggcgagg ggccactgag
     1201 cccccccggc ggcccccaga agcctcggag gccccccctt ccacccaagc ctcagttcct
     1261 gagcccttcg ggacacccct gcagacctct cagaaaccag gcagcggcaa ggccagcgtc
     1321 ccgctcggcc catggggaca tcgtgcgctg gttccgggag gagcagctcc cgctgcgggc
     1381 cggctacctg ggcacctcgg acagcatcgc cccatggttc cacggaattc tcaccgtaca
     1441 gagagcgaat gagcttctga gcacgtgcgt gccaggcagc tttctgatcc gggtcagcga
     1501 gaggatcaag ggctacgtcc tgtcctatct gtccaaggac ggctgcaaac acttcctcat
     1561 agatgcctcc acggactcgt acagcttcct gggtgcagac cagctgcagc acgccagcct
     1621 ggctgacttg gtggagtacc acaaggagga acccatcacc tccctgggga aggagctcct
     1681 tctgtacccc tgcggtcagc aggaacagcc acccgactac cagggcctgt ttgagtgaca
     1741 gcgtcatcgt gtcgtcctgc agccgccagc tggccgtcct ctggacagac agacaccgcg
     1801 gagatggaca cttgtgtagg aagccacatc gccctgcagc gagccgatcc tgatcaagtg
     1861 aaaggaccct tgggggtccc atggcgacct gtcttttgca cagatgctgg agtttaatta
     1921 acgctaagag ggaatcacct ctgcgttgta cgcaccccag cagtaaaggg agaagaaccc
     1981 ccatctccgc agctcccaac atgaaggcta caaccctagt gatgtatgga ataaacgaag
     2041 aagaaattgg aaccttttag gaattaaggg gcacctcaaa accagaagtc ctccatggcc
     2101 ttggcactcc ctctctgcct catctcggaa ggtcttgggg tcctgttcct atgaagttcc
     2161 tcggtggcgt cagggactga cgaaagagcc tgcactggtg gctgagccca cggccctgca
     2221 cacctcactt gtggtgcatg tgtgggccag ggtgtaagac acacagggaa cacaagttgc
     2281 gggtgttgtg aactgaatga ggagtttgaa ggtgtaggac gagagccttc acatgtacag
     2341 aaatactcca gacgatggcg gggggtgagg ggacctgtgt gagcggttcg ctggctctgg
     2401 ggagcggggc agggctctac ccaggacctc gccgaggacg gtgaagccac atgcgtgcct
     2461 tggatagaca agggcagaag agtgagcttt gcggacacta ggtgctgtgg gtcgagtccc
     2521 ccaaagagac attgaagtcc taaccccctg cacctgtgaa cgtggcctta tttggaaaca
     2581 gggtctttgc ggatgtgatc aaattaagac gaggtcaggc cagattaggg cgggccccaa
     2641 aaccaacgac gggcgtcctt ataaggagag aggggttggg aagttgaggt gcgcacgcag
     2701 aggggatggc agccagggga caacagaggc agggccccaa gtgacaagcc gcaagccagg
     2761 ggacgccggg ggccgggggg gggcagcatg gagcagactc cccagagccc tggaggggag
     2821 catggccctg cggacacctc gattccagac ttgtagcctc cagaactatg acagaataaa
     2881 tgtcttttgt cttaa
//
LOCUS       XM_032618381            6686 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SH2 domain containing 4A (SH2D4A),
            transcript variant X5, mRNA.
ACCESSION   XM_032618381
VERSION     XM_032618381.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6686
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6686
                     /gene="SH2D4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746737"
     CDS             4177..5529
                     /gene="SH2D4A"
                     /codon_start=1
                     /product="SH2 domain-containing protein 4A"
                     /protein_id="XP_032474272.1"
                     /db_xref="GeneID:116746737"
                     /translation="MLKQILSEMYIDPDLLAELSEEQKQILFFKMREEQVRRWKEREA
                     AMEKQESLPVKPRPKKDNGKSVHWKLGADEEVWVWVMGEHHLDKPYDTLCDEILAQRA
                     RLKSGQEVRELRKTQSREFTSSLKPKSHSSDVRAPGDREPRSVCEKAAEEGGHGRGRG
                     PASPLEEQKTPLPSSSSRSVHQMLADSISRMKEYGFHQKKESVKKTQDEEVKQIDEER
                     TKQIYKSWKEDSEWQASLRKSKAADERRRSLAKQAREDYKRLSQRGRGGEGPLSPPGG
                     PQKPRRPPLPPKPQFLSPSGHPCRPLRNQAAARPASRSAHGDIVRWFREEQLPLRAGY
                     LGTSDSIAPWFHGILTVQRANELLSTCVPGSFLIRVSERIKGYVLSYLSKDGCKHFLI
                     DASTDSYSFLGADQLQHASLADLVEYHKEEPITSLGKELLLYPCGQQEQPPDYQGLFE
                     "
     misc_feature    5185..5490
                     /gene="SH2D4A"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(5227..5229,5281..5283,5341..5343,5347..5349)
                     /gene="SH2D4A"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(5344..5346,5428..5430)
                     /gene="SH2D4A"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
ORIGIN      
        1 ggcgcgccgc ccccagaaga cgggcccgga cggtggccgc aggcggcccg gcggtgacct
       61 tcccccgccc tcgggttcgc cgggcgcccc cggggtggcg ttaggggcag cggcgagtca
      121 ctgtgcaggt tcgctcagag tcgtctttcc cccgccagag tcacaggaag gaggcaggcg
      181 agctcccctc tttctaaact tagtccctac tcgcctccta aagggctttg tttgactgcc
      241 tgcttgatag aacaacgact tggatacaag tttttttttt tttttttgag tgaagaagta
      301 agtggaaggc gtatgcgggc atagatctgg catgagtgca gtttctgggt aaatccgtgt
      361 acagtgattt caaatttctg aagaggggtg tatatttaca aaatttacca aattgctgtc
      421 acccttggca attcatttta tcctcaaaga tagcccttgt gcagatagat taataacata
      481 aagttgagta aggtaacaga aagtctgaaa acagagctgg ctgttttaaa agaattacaa
      541 ttcaaactat attcttacca ttaaagttat accatccata tcacactatt tttattattg
      601 atttggctgt atctctggca tttggggtaa agtctcagag tcattaaaaa tacaattaaa
      661 aaaaaatagg acagtggctc tggaaagtgt gagagctagg ccacatctct aggcatcctg
      721 aaagacaact gtgaaccatt agaaatttat ttttggaaaa agtagcagat gtggacttgt
      781 tgcttgtcat ttctgtcttt taagaaaagt gttgtacaag aagaaaactg agttagccga
      841 gctttccttt ttactggatc ttgcataagt ggaagcctgc tgccctcagt gtgttagaca
      901 cagaaagtca tgcccgtttg aatcactagc agcactgatt gtccgggata aagtggggaa
      961 accctggtca gctaatttcc tcatttctac ttcctctacc ccggctccac ttgtctccgt
     1021 aactccccgc tagattatat ggcctagacc tcagattaca aagagtcaca gttcaggctc
     1081 atttcacggt gaggaaactc cctacaggga agtgaagtga cagcccagag acacacagcc
     1141 cgcaaggcag agctggccgt cccgtaagtg gcctgagctg tatttgagga aggcgttcgt
     1201 tcacaccact gggagtccac agcctcagcg tggcaggcag tgcatattat tcagcagcct
     1261 cgccccacaa gcatgttgtc agctgggtcc ccaagttttc tctgaggaca gagggaagcc
     1321 agtgtctctc ccttaagggc cattagttat ctttaatgcc aaaaaaaccc atgtttgcta
     1381 caaaaggcga aacagcacaa aatggaagct gtgagagatt gaacgtgtca tccccgaggt
     1441 gcagagcagc cctgcacccc acggcccgcc cgcgctggtc ccagggacag tgagaggggg
     1501 agccaaggag actgagtgcc cggtgaatgc cgtgggcagc atcgtccacg cctgggccgg
     1561 catggcggtc atttcccgct gtccttcctg gggtgggggc ttttcaatac ctggcctccc
     1621 ctgagctcac ctgcagttgc aggggtgagg cttctgcccc cgagagggac cctgcttcat
     1681 gtgctttcgg ttcgtttccg ctctcgcgag aacttgctgg ttttcattct aaaacttcac
     1741 cagttgtacc gcatcccgat gatgctctga ttctgggttc acagactctg ctgcattgac
     1801 ttggagccag accgcccggc gtacgccttt ccatcttcta taaaatgggg atagtgaggg
     1861 actgatctcc aagattatgg caaagattca ttagttactg catgtcaagc gctcaaggta
     1921 gtggctgcgc ggcaggtgtc agcacttgtg accaggagcg ctctgggtgg ggaagtgggg
     1981 gaggggggat ttggcccttt cagggtttta gtttttaggc tcaacccaca ctgtccctgt
     2041 tgctgggagt cacccgattc aaactgggaa acagagtgga agcctccagc ttcactgggc
     2101 tgctcccctc cccatgttta atttctgtga aagtcaaccc ctgctcaagg aacgtgccag
     2161 cataaggaca tttaccggaa tgtcaaggac tctttcactt tggtttctta ccacttggtc
     2221 tgggagcacc ggagtccagt gagctgagga cctgcattct ttctgcggtt ctgacaccta
     2281 cagataagag ctcagcctca ggaaaccacc ctttagtgtg gatttagttg gcccacccct
     2341 ggagaagctg tgagacccga gagtcaagaa agcatcacag aacttcagta ctgtggccgt
     2401 tacagccttt gaagatcacc tcaaagcaaa atacaaagct agccagggag ccgggggcgg
     2461 gcatggctga ctgagttaaa gtcagacagt gcctttaatt aaaattttct cgtaacgttg
     2521 tgttccattt gagttttggt agttgaatgc ggcagattgt aggatgcagt taacgggagt
     2581 cgtggtagcc tcagtaaagg tccctgctat acaatgactc gttagtgaat cgagctatgt
     2641 gttgtgtatg caaaccactc tgggtaccct ggctcttggg ctgttgctca tgcttctctc
     2701 ggaagacggg tgtaaatgga gaaacagatg cgtgaggagg agtatgaaaa ggtgaagctg
     2761 caggggcctc ccaggggtga gaggagcatc acagtctggc tggagaagga ccaggtgatg
     2821 gaactgggag agccatggtg tggctaagtg actagtctga ggtttaagag catttgaact
     2881 tagtttggag aaaaagatat ttgagagggt gtggctaggt ggtgggatta ttgaggcatt
     2941 gtaagcacaa aaggattcgt cagtttctta gaacataggt gatcctggaa agtcgaaata
     3001 agtaagcttt ttttgtgtat cctattatac tggaaccaaa taaacatctt tttttttttc
     3061 agaatggaaa tctatacatt atttccttct gattacaaaa atatgaaggt ttggtatatt
     3121 tttttaaata gaccaaatag aaacatgtaa agtagaatga aaccgcagtg gggtaggcac
     3181 ccccatgaaa caacctgtgt gcttaggtcc aaggttcctt cctctgagaa actctcttac
     3241 agagccagga ccctttgtga tgagcctggt cacctccact cccccagttt atctggtctg
     3301 taaatttaga tcctattaaa ttaggttatc tggaagaggt acacctaaaa cctggtgacc
     3361 ttccaaaatg tacatgaatg ttctctcctg cacctgcaca gttttcatgg ttctagtgtg
     3421 ttgtctgaac attgtattgt ccttttgtga agatgaaagt acataattgt gtttatttag
     3481 tgctactttt aaggagaaat gggaaaatgg cactgtggtc taatgtttat ttcttctttt
     3541 tccttccttg agcatggctt aggtttggtt tgggtctggg tgggtaattc tgagaaatct
     3601 caaaaacggt atttcctttt gaaataactt cttttaattt ttccctgtgc ctttgtctct
     3661 ttaactctgt tcttagccat ggacgtagtg gtttgttggg ctctgaggta atagtatgtt
     3721 tgcttagttg ggagaaggcc aaacctctgt tcattttttg tttccctgag attgacctgt
     3781 tagggtttgt tttgtttttt gataaagtat ctttggaaat tacaggatac aggttacaca
     3841 aactcttaac aaagcttgct tcagctttct tgtgaaatga aaagcaatac tgtatttcct
     3901 ccaagcttta ttcctaagcc tgtcctggcc ccatgtctgc acattttaac acggcctgca
     3961 ttttgcctgt tgctctttgc aggttcatga gtggcgtttt ggacaggatg cttggtgcca
     4021 ggaacccaga gccagtttgt tgaattactg tcccagcccc tcgagtctcg gggaaggtct
     4081 gtgggtgcct cccagggcca gcccaggtga aggcagccct ggaaaccatt ttcaagaact
     4141 tttgccacag gtgtaaaaga ctccaccctt gcaaagatgc tgaaacagat actgtcggag
     4201 atgtacatag atcctgatct gctggcagag ctcagcgaag aacagaaaca gatcctgttc
     4261 ttcaagatga gggaggagca ggtccgccga tggaaagaaa gagaagcagc aatggaaaaa
     4321 caggagtcct tgccagtgaa acccagacca aagaaagaca acggcaaatc ggttcattgg
     4381 aaactgggag ccgacgagga agtctgggtg tgggtgatgg gtgagcacca cctcgataaa
     4441 ccctacgaca cgctctgtga tgagatcctt gcccagaggg cacggctgaa gtcggggcag
     4501 gaggtgcggg agctcagaaa aactcagtcc agagaattca ccagcagctt gaaaccaaag
     4561 tcacactcct ccgatgtgcg ggcaccaggt gaccgggagc ctcggagcgt gtgtgagaag
     4621 gcggcagaag aggggggaca cgggcgcggc cgcgggccag cttcacccct agaagagcag
     4681 aaaacgccct tgccctccag ttcctcaaga agtgttcacc aaatgttggc agattctatc
     4741 agtcgtatga aggaatatgg atttcaccag aagaaagaat ctgtgaagaa aacacaagat
     4801 gaagaagtaa aacaaataga tgaagagaga accaagcaga tttataagag ctggaaagaa
     4861 gattcggagt ggcaggcctc tttgcgaaaa tccaaggcag ctgatgagag gaggcgctcc
     4921 ctggcaaaac aggcgcggga ggactacaag aggctgtccc agagggggag aggcggcgag
     4981 gggccactga gcccccccgg cggcccccag aagcctcgga ggccccccct tccacccaag
     5041 cctcagttcc tgagcccttc gggacacccc tgcagacctc tcagaaacca ggcagcggca
     5101 aggccagcgt cccgctcggc ccatggggac atcgtgcgct ggttccggga ggagcagctc
     5161 ccgctgcggg ccggctacct gggcacctcg gacagcatcg ccccatggtt ccacggaatt
     5221 ctcaccgtac agagagcgaa tgagcttctg agcacgtgcg tgccaggcag ctttctgatc
     5281 cgggtcagcg agaggatcaa gggctacgtc ctgtcctatc tgtccaagga cggctgcaaa
     5341 cacttcctca tagatgcctc cacggactcg tacagcttcc tgggtgcaga ccagctgcag
     5401 cacgccagcc tggctgactt ggtggagtac cacaaggagg aacccatcac ctccctgggg
     5461 aaggagctcc ttctgtaccc ctgcggtcag caggaacagc cacccgacta ccagggcctg
     5521 tttgagtgac agcgtcatcg tgtcgtcctg cagccgccag ctggccgtcc tctggacaga
     5581 cagacaccgc ggagatggac acttgtgtag gaagccacat cgccctgcag cgagccgatc
     5641 ctgatcaagt gaaaggaccc ttgggggtcc catggcgacc tgtcttttgc acagatgctg
     5701 gagtttaatt aacgctaaga gggaatcacc tctgcgttgt acgcacccca gcagtaaagg
     5761 gagaagaacc cccatctccg cagctcccaa catgaaggct acaaccctag tgatgtatgg
     5821 aataaacgaa gaagaaattg gaacctttta ggaattaagg ggcacctcaa aaccagaagt
     5881 cctccatggc cttggcactc cctctctgcc tcatctcgga aggtcttggg gtcctgttcc
     5941 tatgaagttc ctcggtggcg tcagggactg acgaaagagc ctgcactggt ggctgagccc
     6001 acggccctgc acacctcact tgtggtgcat gtgtgggcca gggtgtaaga cacacaggga
     6061 acacaagttg cgggtgttgt gaactgaatg aggagtttga aggtgtagga cgagagcctt
     6121 cacatgtaca gaaatactcc agacgatggc ggggggtgag gggacctgtg tgagcggttc
     6181 gctggctctg gggagcgggg cagggctcta cccaggacct cgccgaggac ggtgaagcca
     6241 catgcgtgcc ttggatagac aagggcagaa gagtgagctt tgcggacact aggtgctgtg
     6301 ggtcgagtcc cccaaagaga cattgaagtc ctaaccccct gcacctgtga acgtggcctt
     6361 atttggaaac agggtctttg cggatgtgat caaattaaga cgaggtcagg ccagattagg
     6421 gcgggcccca aaaccaacga cgggcgtcct tataaggaga gaggggttgg gaagttgagg
     6481 tgcgcacgca gaggggatgg cagccagggg acaacagagg cagggcccca agtgacaagc
     6541 cgcaagccag gggacgccgg gggccggggg ggggcagcat ggagcagact ccccagagcc
     6601 ctggagggga gcatggccct gcggacacct cgattccaga cttgtagcct ccagaactat
     6661 gacagaataa atgtcttttg tcttaa
//
LOCUS       XM_032618382            6392 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PEAK1 related, kinase-activating
            pseudokinase 1 (PRAG1), transcript variant X1, mRNA.
ACCESSION   XM_032618382
VERSION     XM_032618382.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6392
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6392
                     /gene="PRAG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746738"
     CDS             171..4517
                     /gene="PRAG1"
                     /codon_start=1
                     /product="inactive tyrosine-protein kinase PRAG1 isoform
                     X1"
                     /protein_id="XP_032474273.1"
                     /db_xref="GeneID:116746738"
                     /translation="MRSVLPFQEAALCAPSASPETTAGSQAQDEPAPRLLLKMHQTIP
                     VNPESPKMSACSDFVEHIWKPGSCKNCFCLRTDHQPAPGRPQPRAGSLPPPPRLPPRP
                     ESGRPEDEGLSSSPYSKPTIAVKPTMMSSDASDGWTEAGVSAEVAQVIWRRAPGKLPT
                     PKQEDVPVVYLGSFRGVQKPAGPLAPADGGHPRCPPAYAMVGLHSLESRGERSVAFHP
                     VSFPDEKLGREDKPTIPYQELTSPQESFRQKLAAFAEMTSGCHKGPRPYPSAQPLRES
                     LPSEDDSDQRCSPSGDSEGGEYCSILDCCPGSPGGQDASQAEDSGRRQGCRDCSPACW
                     EQGMCSKPTEEERRALSFPGECRSQGLTENPPRLGPKKHSLTSEAASSSDGLSCGSAS
                     SRASSPLVPQHESDSCSLMKAPGPGKQQDSGCHGVASSRCLGLTGEPQAPSHPGETAQ
                     PEPIYAESTKRKKAVPVPSRPQTKAEQAAAAQGQGQGQVRMANTWAQKTASGWGQDRE
                     GPEVAPQVAATITVMAAHPEEDHRTIYLSSPDSSVGVQWPRGPLSQAPEAGEGEPSAG
                     QGLSSRESRHHGASESTPKGRPAIPPKLSKSSPGGSPVSPSASPQPNLSEGNSGVTGP
                     QPPSRGPADPASSCRANGVPASDSARGPPPATATSASDQRRPRYQTGAWSRQCRIEEE
                     EEVEQDLLSQSWGRGVDGGPTGPCSSSTWLRSRPTDGASGPKSKAGTGMSKSASFAFE
                     FPKDKSGIEAFSPPPPPPKSRHLLKMNKSSSDLEKVSQGSAESLSPSFRGVHVSFTTG
                     STDSLASDSRTCSDGGPSSELTHSPTSSRKELFSPVPFPSGSTEDVSPGGPLQPPPLP
                     QKKLVSRAASSPDGFFWTQGSPKPRTADPKLNLSHSETNVCVHDKSHFSYSSGPGSRH
                     QHIFSASEPLEKMFKDNGPWGPAPGLAGSQSLQGKGVSSAAASQLSVSSQASAGSAQL
                     QLHSLLSSISSKEGTYTKLGGLYAQSLVRLVARCEDLFMGGQKKGLHFSENNWSLFKL
                     ACNKPCCDSGDAIYYCATCSEDPGSTYAVKICKTPEPKAASYCSPSVPVHFNIQQDCG
                     HFVASVPSSMLTSPDAPKDPLSALPSHPPTQEQDCVVVITREVPHQTASDFVQDSATS
                     HQSEPEVYERRVCFLLLQLCNGLEHLKEHGIIHRDLCLENLLLVHCAPQASPDPSSAT
                     SWAPPTTLPPAPAATPSSCPSAALPAGVTPTPPAGLACQGGPGEKHLPRLIISNFLKA
                     KQKPGGSTNLQQKKSQARLAPEIVSASQYRKFDEFQTGILIYELLHQPNPFEVRAQLR
                     EQDYRQEDLPPLPVLSLYSPGLQRLAHLLLQADPIKRIRIGEAKRVLQCLLWGPRREL
                     VEQPGTSEEALCATLSNWIDMKRALMMMKFAEKAVDRRRGVELEDWLCCQYLASAEPG
                     ALLQSLKLLQLL"
     misc_feature    1089..>2198
                     /gene="PRAG1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    <1749..2939
                     /gene="PRAG1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); Region: Herpes_BLLF1; pfam05109"
                     /db_xref="CDD:282904"
     misc_feature    <3393..4286
                     /gene="PRAG1"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
ORIGIN      
        1 gcggccgggc acggaccgcg cgcacacact ctccaaacaa tgctccgagg cgctcggcgg
       61 ggcggcgggc ggctcggaga ccagcggcga ggccggggga tcgcggcccc gagtcacatc
      121 gtcaggctcg aattgatcac gcccccgtcc tctggcaggg gagatctctg atgaggagtg
      181 ttctgccttt ccaggaagcc gccctgtgcg ccccatccgc ctcccctgag accacggcag
      241 ggagccaggc gcaagatgaa ccagcacccc gcctgctgct caagatgcac cagaccatcc
      301 cagtgaaccc cgagagcccg aaaatgtctg cgtgcagcga ctttgtggag cacatctgga
      361 agcccgggtc ctgcaaaaac tgcttctgcc tgcgcaccga ccaccagccg gcacctggcc
      421 gcccccagcc ccgagccggc agcctgcccc ctccgcctcg cctgcccccc aggcccgaga
      481 gcggccgccc ggaagatgaa ggcctgagca gctcgcccta ctccaagccc accattgccg
      541 tgaagcccac catgatgagc tccgatgcct ccgatgggtg gacggaggct ggcgtgagtg
      601 ccgaagttgc gcaggtcatc tggagacgag cccccggcaa gctccccacc ccgaagcagg
      661 aagatgtgcc agtagtttac ctgggcagct tccgaggcgt ccagaagcct gctgggccct
      721 tggcccccgc agatgggggg caccctcgct gcccccctgc ctatgccatg gtcggcctgc
      781 acagcctaga gtcccggggg gaacggagtg tcgccttcca cccagtgagc ttccccgatg
      841 agaagcttgg acgagaagat aaacccacga ttccctacca agagctgacc tcccctcagg
      901 agagcttccg ccagaaactg gctgcctttg ctgagatgac ctctggctgc cacaagggcc
      961 ccaggcccta cccctctgca cagcccctgc gggaatccct gccctcggag gatgacagcg
     1021 atcaaaggtg ctcgccctca ggggacagcg aagggggaga atactgctcc atcctggact
     1081 gctgccctgg gagcccaggt ggtcaggacg cctcacaggc tgaggactcc gggcgcagac
     1141 agggctgcag ggactgctcg ccggcctgct gggagcaggg gatgtgctcg aagccaaccg
     1201 aggaggagag gcgggctttg agcttccccg gggagtgccg cagccagggc ctgacagaga
     1261 acccaccccg cctgggcccc aagaagcact ccctcacctc agaggccgcc agctcctcgg
     1321 atggcctctc ctgcgggagt gccagtagcc gcgccagcag ccccctggtc ccccagcacg
     1381 agagcgattc ctgctccctc atgaaggcac ctgggccggg gaagcagcag gactctggct
     1441 gccacggggt ggcctccagc aggtgcctgg ggctgactgg ggagccccag gccccatccc
     1501 accccgggga gactgcacag cctgaaccca tctatgctga gagcaccaag aggaagaagg
     1561 ctgttccagt tccttccagg ccacagacca aggcagaaca ggcagcagct gcccagggcc
     1621 agggccaggg ccaggtgagg atggctaaca cctgggctca gaaaacagcg tctggctggg
     1681 gccaggacag ggaaggccca gaggtggcac cccaggtggc ggccaccatc acagtcatgg
     1741 cggcccaccc agaagaagac caccggacaa tctacctgag cagccccgac tcttcggtgg
     1801 gggtgcagtg gcctcgcggg cccctgagcc aggcccctga ggcaggcgaa ggggagcctt
     1861 cggctgggca ggggctcagc tcgagggaga gccgccatca cggtgccagt gagagcacgc
     1921 ccaaggggag gcctgccatc cctcccaagc tgtccaagag tagccccgga gggtccccag
     1981 tgtccccatc ggcctccccc cagcccaacc tcagcgaagg caactcgggt gtcactgggc
     2041 cccagcctcc atccaggggt cccgctgacc ctgcttcctc ctgccgggcc aacggtgtcc
     2101 ctgccagcga ctctgccagg ggccccccgc ccgccactgc cacgtcagcc tcggaccaga
     2161 ggcggccccg gtaccagacc ggcgcctgga gccgccagtg ccggatagag gaagaggagg
     2221 aggtggagca ggacttgctg agccaaagct gggggagagg ggtggacggt ggccccacag
     2281 gcccatgcag ctcctccacc tggctccgct cccgccccac agacggcgcc tctgggccaa
     2341 agagcaaagc cgggaccggg atgagcaaat cggcctcgtt tgcctttgag ttccccaagg
     2401 acaaaagtgg gatcgaggca ttctcgcctc ccccgccgcc tccgaagtca cggcaccttt
     2461 taaaaatgaa caagagcagc tctgatttgg agaaggtgag ccagggctct gctgagagcc
     2521 ttagcccatc cttcaggggc gtccacgtca gcttcaccac gggctccacg gacagcctgg
     2581 cctccgactc caggacctgc agcgacggag gtccatcatc tgagctgact cactcgccca
     2641 ccagcagcag gaaggagctc ttcagccctg ttcccttccc ttcgggctcc actgaggatg
     2701 tgtcccccgg tggccccctg caacccccac ctcttcccca gaagaagcta gtgagccggg
     2761 cggcctcttc tccggatggc ttcttctgga cccaaggctc ccccaagcca agaacagcag
     2821 atcccaagct gaacctcagc cactcagaaa ccaacgtctg tgtccatgac aagtcccact
     2881 tcagctactc ctcaggcccc ggcagccgcc accagcacat cttctctgct tccgagcctc
     2941 tggagaaaat gttcaaagac aatggcccct ggggcccagc gccagggctg gcgggcagcc
     3001 agagcctgca gggcaaaggg gtctcctcgg ccgcggcctc ccagctgagc gtgtccagcc
     3061 aggcctcggc gggcagcgcc cagctgcagc tccacagcct cctgagcagc atcagcagca
     3121 aggagggcac ctacaccaag ctgggagggc tctacgccca gtccttggtc cgcctcgtgg
     3181 ccaggtgtga ggacctcttc atgggcggcc agaaaaaggg gctgcacttc agcgagaata
     3241 actggtccct gttcaagctg gcctgtaaca agccctgctg cgactcgggg gatgccattt
     3301 attactgtgc cacctgctcc gaggaccccg gcagcaccta cgctgtgaaa atctgcaaaa
     3361 cccctgagcc caaagcagcc tcgtactgca gcccttccgt gcccgtgcac ttcaacatcc
     3421 agcaggactg cggccacttt gtcgcctcgg tgccctccag catgctcacc tctcccgatg
     3481 cgcccaagga ccccctgtct gccctgcctt cacatccccc cacccaggag caggactgcg
     3541 tggtggtcat cacccgagag gtaccccacc agaccgcctc ggactttgtg caagactcag
     3601 ccaccagcca ccagtctgag cccgaggttt acgagcggcg cgtgtgcttc ctgcttctgc
     3661 agctctgcaa cgggctggag cacctgaagg agcacggcat catccaccgg gacctatgcc
     3721 tggagaacct gctgctggtg cactgcgccc cgcaggcctc cccggacccc tcctccgcca
     3781 cctcctgggc ccctcccacc accttacccc ctgcccctgc cgctacccct tcctcttgcc
     3841 cctctgccgc cctcccggcc ggcgtcacgc ccacccctcc ggctggcctt gcctgtcagg
     3901 gagggcccgg cgagaagcac ttgccccgac tcatcatcag caacttcctg aaggccaagc
     3961 agaagccggg cggttccacc aacctgcagc agaaaaagag ccaggcccgc ctggcaccag
     4021 agattgtgtc tgcctcccag taccgcaagt tcgacgagtt ccaaacgggc atcctcattt
     4081 acgagctgct ccaccagccc aacccgttcg aggtgcgggc gcagctgcgg gagcaggact
     4141 accggcagga ggacctgccc ccactgcccg tgctgtccct ctactcgccg ggcctgcagc
     4201 ggctcgcgca cctgctgctg caggccgacc ccatcaagcg catccgcatc ggcgaggcca
     4261 agcgcgtgct gcagtgcctt ctgtggggac cccggcggga gctggtggag cagccgggca
     4321 cctccgagga ggcgctgtgc gccacgctca gcaactggat cgacatgaag cgggccctga
     4381 tgatgatgaa gttcgccgag aaggcggtgg accgccggcg cggggtggag ctggaggact
     4441 ggctctgctg ccagtatctg gcatcggcgg agcccggagc tctcttacaa tcgctgaagc
     4501 tcctgcagct tctgtgaggc agcccccgtc ccgcgtgctg cccccaaccc cgccttgcct
     4561 tgccttggaa acatctgtgt ctcctgggaa atggtacaaa tgactgttgt acttggatgt
     4621 tatatatata tgtgtgtgtg tgtgtaagat ataaatacaa aagactgagg atgtcactgc
     4681 ccaccctggt ctggcctcct ctcctcccca gccttgaagt tttcgcctac aattgtgtac
     4741 atttctagct tattgcaagg tcctgagaac agtgtggcca gcagagtgaa gcctggactc
     4801 tggtctcact accccattat gggctctctt taccactctt gtcaagtggc tatttaaaaa
     4861 aaaaaaccaa aaaactctcc atttttaatt aaaattttcg gttgactcat gagtaaagaa
     4921 agctctttta tcctcaagtg cccaagagcg ttaatacctt tggcgggtaa aattgttttt
     4981 aagcccctga agcagtggct tcaagaccac ctgaactgtc ctctatctta cacttctcgt
     5041 aagatagagc aaaaggccgc aagggcccca ggcatgcgga gaccagttaa tcttccctgc
     5101 ttctctcccc acctaacaag tctcttagga agaattcaga cacagctggt atgatcccag
     5161 aatttcagaa tttaatccca ctgcttgaaa tccatttcca gtttgctaaa cctggttgtc
     5221 atttgtatca gaagcctggc tcaaagcaaa agccacccca gatggttcaa atgacaagac
     5281 cctgacggga ccacttagag agttgtgggc agggttaaga gaaaagcaaa gggtgatgag
     5341 gcaaaagcaa gggcaggaat ggggaggatt cactcaacct gtttcccacc tgtcatccct
     5401 aggccaagac cagtgagatg ccagacagca agggcccctg ggtgatacag tctgcaggat
     5461 tggcctccct gggcagggtt gagaaggatg gatggagggc taggtggaaa acagcccact
     5521 gttactgctg tcctagataa gggcagggca agaatcgaac tccagtgttc ccactttcag
     5581 accgctagtc cccctgctgt tctaagctcc tttgggtttc cattttcaaa aactcattca
     5641 aaatacttta aaaatactca aagaaaatta ggaagcagca gatctttcct cctcaaaact
     5701 agactcacaa gaagtcacta aatactcatt tgaagagaaa cagcccaagg cccttgtatt
     5761 tctacctaaa gagtaatctt ccaacttgtg aactaatttc tcaaaccttg ttaataacta
     5821 tggacaactt taaaacaaat gcaaagatct taatgaatgt cctagaaatc taggaatgtg
     5881 gctagcaacc aggatgggga aatctcccag gtcaccttct gcatattagt ttcactcctt
     5941 ttacaagcct tccatcctgg gactccaggt aaacacacct atacttccaa gcatctgagg
     6001 tgaaacctgg ggcttcgggg cacatttgtc atttcacctc ttgcttgagc attgagggaa
     6061 gaagtggcta aaaccagctt ccaactatgt ttgtacaaga gaaagagttt tgaacatgga
     6121 aatcataatt ctccatagga ccttcctgtt tcagggcgta ttagtttgtc cgttgtttct
     6181 tcctgggaat tttccaggca aaccctctgc cttgctttct tgttctttct tacttcaaat
     6241 aaataaacaa tggagaggga ggaaacaaat attctgccga ggaataaggc gctatttgga
     6301 aataaacgtc tcaagaggca cattttaaac ctctgaatta attgtacctt ttttatatgc
     6361 cacccacttc agggaaaaaa aaaaaaaaaa aa
//
LOCUS       XM_032618383            6330 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PEAK1 related, kinase-activating
            pseudokinase 1 (PRAG1), transcript variant X2, mRNA.
ACCESSION   XM_032618383
VERSION     XM_032618383.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6330
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6330
                     /gene="PRAG1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746738"
     CDS             223..4455
                     /gene="PRAG1"
                     /codon_start=1
                     /product="inactive tyrosine-protein kinase PRAG1 isoform
                     X2"
                     /protein_id="XP_032474274.1"
                     /db_xref="GeneID:116746738"
                     /translation="MHQTIPVNPESPKMSACSDFVEHIWKPGSCKNCFCLRTDHQPAP
                     GRPQPRAGSLPPPPRLPPRPESGRPEDEGLSSSPYSKPTIAVKPTMMSSDASDGWTEA
                     GVSAEVAQVIWRRAPGKLPTPKQEDVPVVYLGSFRGVQKPAGPLAPADGGHPRCPPAY
                     AMVGLHSLESRGERSVAFHPVSFPDEKLGREDKPTIPYQELTSPQESFRQKLAAFAEM
                     TSGCHKGPRPYPSAQPLRESLPSEDDSDQRCSPSGDSEGGEYCSILDCCPGSPGGQDA
                     SQAEDSGRRQGCRDCSPACWEQGMCSKPTEEERRALSFPGECRSQGLTENPPRLGPKK
                     HSLTSEAASSSDGLSCGSASSRASSPLVPQHESDSCSLMKAPGPGKQQDSGCHGVASS
                     RCLGLTGEPQAPSHPGETAQPEPIYAESTKRKKAVPVPSRPQTKAEQAAAAQGQGQGQ
                     VRMANTWAQKTASGWGQDREGPEVAPQVAATITVMAAHPEEDHRTIYLSSPDSSVGVQ
                     WPRGPLSQAPEAGEGEPSAGQGLSSRESRHHGASESTPKGRPAIPPKLSKSSPGGSPV
                     SPSASPQPNLSEGNSGVTGPQPPSRGPADPASSCRANGVPASDSARGPPPATATSASD
                     QRRPRYQTGAWSRQCRIEEEEEVEQDLLSQSWGRGVDGGPTGPCSSSTWLRSRPTDGA
                     SGPKSKAGTGMSKSASFAFEFPKDKSGIEAFSPPPPPPKSRHLLKMNKSSSDLEKVSQ
                     GSAESLSPSFRGVHVSFTTGSTDSLASDSRTCSDGGPSSELTHSPTSSRKELFSPVPF
                     PSGSTEDVSPGGPLQPPPLPQKKLVSRAASSPDGFFWTQGSPKPRTADPKLNLSHSET
                     NVCVHDKSHFSYSSGPGSRHQHIFSASEPLEKMFKDNGPWGPAPGLAGSQSLQGKGVS
                     SAAASQLSVSSQASAGSAQLQLHSLLSSISSKEGTYTKLGGLYAQSLVRLVARCEDLF
                     MGGQKKGLHFSENNWSLFKLACNKPCCDSGDAIYYCATCSEDPGSTYAVKICKTPEPK
                     AASYCSPSVPVHFNIQQDCGHFVASVPSSMLTSPDAPKDPLSALPSHPPTQEQDCVVV
                     ITREVPHQTASDFVQDSATSHQSEPEVYERRVCFLLLQLCNGLEHLKEHGIIHRDLCL
                     ENLLLVHCAPQASPDPSSATSWAPPTTLPPAPAATPSSCPSAALPAGVTPTPPAGLAC
                     QGGPGEKHLPRLIISNFLKAKQKPGGSTNLQQKKSQARLAPEIVSASQYRKFDEFQTG
                     ILIYELLHQPNPFEVRAQLREQDYRQEDLPPLPVLSLYSPGLQRLAHLLLQADPIKRI
                     RIGEAKRVLQCLLWGPRRELVEQPGTSEEALCATLSNWIDMKRALMMMKFAEKAVDRR
                     RGVELEDWLCCQYLASAEPGALLQSLKLLQLL"
     misc_feature    1027..>2136
                     /gene="PRAG1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    <1687..2877
                     /gene="PRAG1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); Region: Herpes_BLLF1; pfam05109"
                     /db_xref="CDD:282904"
     misc_feature    <3331..4224
                     /gene="PRAG1"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
ORIGIN      
        1 caggcagacg acaccgcccg cggccgggca cggaccgcgc gcacacactc tccaaacaat
       61 gctccgaggc gctcggcggg gcggcgggcg gctcggagac cagcggcgag gccgggggat
      121 cgcggccccg aggaagccgc cctgtgcgcc ccatccgcct cccctgagac cacggcaggg
      181 agccaggcgc aagatgaacc agcaccccgc ctgctgctca agatgcacca gaccatccca
      241 gtgaaccccg agagcccgaa aatgtctgcg tgcagcgact ttgtggagca catctggaag
      301 cccgggtcct gcaaaaactg cttctgcctg cgcaccgacc accagccggc acctggccgc
      361 ccccagcccc gagccggcag cctgccccct ccgcctcgcc tgccccccag gcccgagagc
      421 ggccgcccgg aagatgaagg cctgagcagc tcgccctact ccaagcccac cattgccgtg
      481 aagcccacca tgatgagctc cgatgcctcc gatgggtgga cggaggctgg cgtgagtgcc
      541 gaagttgcgc aggtcatctg gagacgagcc cccggcaagc tccccacccc gaagcaggaa
      601 gatgtgccag tagtttacct gggcagcttc cgaggcgtcc agaagcctgc tgggcccttg
      661 gcccccgcag atggggggca ccctcgctgc ccccctgcct atgccatggt cggcctgcac
      721 agcctagagt cccgggggga acggagtgtc gccttccacc cagtgagctt ccccgatgag
      781 aagcttggac gagaagataa acccacgatt ccctaccaag agctgacctc ccctcaggag
      841 agcttccgcc agaaactggc tgcctttgct gagatgacct ctggctgcca caagggcccc
      901 aggccctacc cctctgcaca gcccctgcgg gaatccctgc cctcggagga tgacagcgat
      961 caaaggtgct cgccctcagg ggacagcgaa gggggagaat actgctccat cctggactgc
     1021 tgccctggga gcccaggtgg tcaggacgcc tcacaggctg aggactccgg gcgcagacag
     1081 ggctgcaggg actgctcgcc ggcctgctgg gagcagggga tgtgctcgaa gccaaccgag
     1141 gaggagaggc gggctttgag cttccccggg gagtgccgca gccagggcct gacagagaac
     1201 ccaccccgcc tgggccccaa gaagcactcc ctcacctcag aggccgccag ctcctcggat
     1261 ggcctctcct gcgggagtgc cagtagccgc gccagcagcc ccctggtccc ccagcacgag
     1321 agcgattcct gctccctcat gaaggcacct gggccgggga agcagcagga ctctggctgc
     1381 cacggggtgg cctccagcag gtgcctgggg ctgactgggg agccccaggc cccatcccac
     1441 cccggggaga ctgcacagcc tgaacccatc tatgctgaga gcaccaagag gaagaaggct
     1501 gttccagttc cttccaggcc acagaccaag gcagaacagg cagcagctgc ccagggccag
     1561 ggccagggcc aggtgaggat ggctaacacc tgggctcaga aaacagcgtc tggctggggc
     1621 caggacaggg aaggcccaga ggtggcaccc caggtggcgg ccaccatcac agtcatggcg
     1681 gcccacccag aagaagacca ccggacaatc tacctgagca gccccgactc ttcggtgggg
     1741 gtgcagtggc ctcgcgggcc cctgagccag gcccctgagg caggcgaagg ggagccttcg
     1801 gctgggcagg ggctcagctc gagggagagc cgccatcacg gtgccagtga gagcacgccc
     1861 aaggggaggc ctgccatccc tcccaagctg tccaagagta gccccggagg gtccccagtg
     1921 tccccatcgg cctcccccca gcccaacctc agcgaaggca actcgggtgt cactgggccc
     1981 cagcctccat ccaggggtcc cgctgaccct gcttcctcct gccgggccaa cggtgtccct
     2041 gccagcgact ctgccagggg ccccccgccc gccactgcca cgtcagcctc ggaccagagg
     2101 cggccccggt accagaccgg cgcctggagc cgccagtgcc ggatagagga agaggaggag
     2161 gtggagcagg acttgctgag ccaaagctgg gggagagggg tggacggtgg ccccacaggc
     2221 ccatgcagct cctccacctg gctccgctcc cgccccacag acggcgcctc tgggccaaag
     2281 agcaaagccg ggaccgggat gagcaaatcg gcctcgtttg cctttgagtt ccccaaggac
     2341 aaaagtggga tcgaggcatt ctcgcctccc ccgccgcctc cgaagtcacg gcacctttta
     2401 aaaatgaaca agagcagctc tgatttggag aaggtgagcc agggctctgc tgagagcctt
     2461 agcccatcct tcaggggcgt ccacgtcagc ttcaccacgg gctccacgga cagcctggcc
     2521 tccgactcca ggacctgcag cgacggaggt ccatcatctg agctgactca ctcgcccacc
     2581 agcagcagga aggagctctt cagccctgtt cccttccctt cgggctccac tgaggatgtg
     2641 tcccccggtg gccccctgca acccccacct cttccccaga agaagctagt gagccgggcg
     2701 gcctcttctc cggatggctt cttctggacc caaggctccc ccaagccaag aacagcagat
     2761 cccaagctga acctcagcca ctcagaaacc aacgtctgtg tccatgacaa gtcccacttc
     2821 agctactcct caggccccgg cagccgccac cagcacatct tctctgcttc cgagcctctg
     2881 gagaaaatgt tcaaagacaa tggcccctgg ggcccagcgc cagggctggc gggcagccag
     2941 agcctgcagg gcaaaggggt ctcctcggcc gcggcctccc agctgagcgt gtccagccag
     3001 gcctcggcgg gcagcgccca gctgcagctc cacagcctcc tgagcagcat cagcagcaag
     3061 gagggcacct acaccaagct gggagggctc tacgcccagt ccttggtccg cctcgtggcc
     3121 aggtgtgagg acctcttcat gggcggccag aaaaaggggc tgcacttcag cgagaataac
     3181 tggtccctgt tcaagctggc ctgtaacaag ccctgctgcg actcggggga tgccatttat
     3241 tactgtgcca cctgctccga ggaccccggc agcacctacg ctgtgaaaat ctgcaaaacc
     3301 cctgagccca aagcagcctc gtactgcagc ccttccgtgc ccgtgcactt caacatccag
     3361 caggactgcg gccactttgt cgcctcggtg ccctccagca tgctcacctc tcccgatgcg
     3421 cccaaggacc ccctgtctgc cctgccttca catcccccca cccaggagca ggactgcgtg
     3481 gtggtcatca cccgagaggt accccaccag accgcctcgg actttgtgca agactcagcc
     3541 accagccacc agtctgagcc cgaggtttac gagcggcgcg tgtgcttcct gcttctgcag
     3601 ctctgcaacg ggctggagca cctgaaggag cacggcatca tccaccggga cctatgcctg
     3661 gagaacctgc tgctggtgca ctgcgccccg caggcctccc cggacccctc ctccgccacc
     3721 tcctgggccc ctcccaccac cttaccccct gcccctgccg ctaccccttc ctcttgcccc
     3781 tctgccgccc tcccggccgg cgtcacgccc acccctccgg ctggccttgc ctgtcaggga
     3841 gggcccggcg agaagcactt gccccgactc atcatcagca acttcctgaa ggccaagcag
     3901 aagccgggcg gttccaccaa cctgcagcag aaaaagagcc aggcccgcct ggcaccagag
     3961 attgtgtctg cctcccagta ccgcaagttc gacgagttcc aaacgggcat cctcatttac
     4021 gagctgctcc accagcccaa cccgttcgag gtgcgggcgc agctgcggga gcaggactac
     4081 cggcaggagg acctgccccc actgcccgtg ctgtccctct actcgccggg cctgcagcgg
     4141 ctcgcgcacc tgctgctgca ggccgacccc atcaagcgca tccgcatcgg cgaggccaag
     4201 cgcgtgctgc agtgccttct gtggggaccc cggcgggagc tggtggagca gccgggcacc
     4261 tccgaggagg cgctgtgcgc cacgctcagc aactggatcg acatgaagcg ggccctgatg
     4321 atgatgaagt tcgccgagaa ggcggtggac cgccggcgcg gggtggagct ggaggactgg
     4381 ctctgctgcc agtatctggc atcggcggag cccggagctc tcttacaatc gctgaagctc
     4441 ctgcagcttc tgtgaggcag cccccgtccc gcgtgctgcc cccaaccccg ccttgccttg
     4501 ccttggaaac atctgtgtct cctgggaaat ggtacaaatg actgttgtac ttggatgtta
     4561 tatatatatg tgtgtgtgtg tgtaagatat aaatacaaaa gactgaggat gtcactgccc
     4621 accctggtct ggcctcctct cctccccagc cttgaagttt tcgcctacaa ttgtgtacat
     4681 ttctagctta ttgcaaggtc ctgagaacag tgtggccagc agagtgaagc ctggactctg
     4741 gtctcactac cccattatgg gctctcttta ccactcttgt caagtggcta tttaaaaaaa
     4801 aaaaccaaaa aactctccat ttttaattaa aattttcggt tgactcatga gtaaagaaag
     4861 ctcttttatc ctcaagtgcc caagagcgtt aatacctttg gcgggtaaaa ttgtttttaa
     4921 gcccctgaag cagtggcttc aagaccacct gaactgtcct ctatcttaca cttctcgtaa
     4981 gatagagcaa aaggccgcaa gggccccagg catgcggaga ccagttaatc ttccctgctt
     5041 ctctccccac ctaacaagtc tcttaggaag aattcagaca cagctggtat gatcccagaa
     5101 tttcagaatt taatcccact gcttgaaatc catttccagt ttgctaaacc tggttgtcat
     5161 ttgtatcaga agcctggctc aaagcaaaag ccaccccaga tggttcaaat gacaagaccc
     5221 tgacgggacc acttagagag ttgtgggcag ggttaagaga aaagcaaagg gtgatgaggc
     5281 aaaagcaagg gcaggaatgg ggaggattca ctcaacctgt ttcccacctg tcatccctag
     5341 gccaagacca gtgagatgcc agacagcaag ggcccctggg tgatacagtc tgcaggattg
     5401 gcctccctgg gcagggttga gaaggatgga tggagggcta ggtggaaaac agcccactgt
     5461 tactgctgtc ctagataagg gcagggcaag aatcgaactc cagtgttccc actttcagac
     5521 cgctagtccc cctgctgttc taagctcctt tgggtttcca ttttcaaaaa ctcattcaaa
     5581 atactttaaa aatactcaaa gaaaattagg aagcagcaga tctttcctcc tcaaaactag
     5641 actcacaaga agtcactaaa tactcatttg aagagaaaca gcccaaggcc cttgtatttc
     5701 tacctaaaga gtaatcttcc aacttgtgaa ctaatttctc aaaccttgtt aataactatg
     5761 gacaacttta aaacaaatgc aaagatctta atgaatgtcc tagaaatcta ggaatgtggc
     5821 tagcaaccag gatggggaaa tctcccaggt caccttctgc atattagttt cactcctttt
     5881 acaagccttc catcctggga ctccaggtaa acacacctat acttccaagc atctgaggtg
     5941 aaacctgggg cttcggggca catttgtcat ttcacctctt gcttgagcat tgagggaaga
     6001 agtggctaaa accagcttcc aactatgttt gtacaagaga aagagttttg aacatggaaa
     6061 tcataattct ccataggacc ttcctgtttc agggcgtatt agtttgtccg ttgtttcttc
     6121 ctgggaattt tccaggcaaa ccctctgcct tgctttcttg ttctttctta cttcaaataa
     6181 ataaacaatg gagagggagg aaacaaatat tctgccgagg aataaggcgc tatttggaaa
     6241 taaacgtctc aagaggcaca ttttaaacct ctgaattaat tgtacctttt ttatatgcca
     6301 cccacttcag ggaaaaaaaa aaaaaaaaaa
//
LOCUS       XM_032618384            5149 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ectonucleotide
            pyrophosphatase/phosphodiesterase 6 (ENPP6), transcript variant X1,
            mRNA.
ACCESSION   XM_032618384
VERSION     XM_032618384.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5149
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5149
                     /gene="ENPP6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746740"
     CDS             96..1550
                     /gene="ENPP6"
                     /codon_start=1
                     /product="glycerophosphocholine cholinephosphodiesterase
                     ENPP6 isoform X1"
                     /protein_id="XP_032474275.1"
                     /db_xref="GeneID:116746740"
                     /translation="MAEKLGALLLALVLSLAQPAPARRKLLVFLLDGFRSDYISDEVL
                     ESLPGFREIVSRGVKADYLTPDFPSLSYPNYYSLMTGRHCEVHQMIGNYMWDPATNKS
                     FDIGVNRDSLMPLWWNGSEPLWITLTKAKRKVYMYYWPGCEVEILGVRPTYCLEYKNV
                     PTDINFANAVSDALDFFKSGQADLVAIYYERIDVEGHHYGPSSPQRKEALRAVDTVLK
                     YMTTWIQERELQDDLNVIIFSDHGMTDIFWMDKVIELDKYISLHDLQQVKDRGPVVSL
                     WPAPGKHSEIYNKLRTVEHMTVYKKEAIPSRFYYKKGKFVSPLTLVADEGWFITENRE
                     TLPFWMNSTDKRQGWQRGWHGYDNELRDMRGIFLAFGPGSIQSWDLHVAGKWDTFLNW
                     GAPRLTSPCQIGGLEEEYAAGVGLGSPAGQSNFCDHSGSAGLAETSSFRWPLGPQGKL
                     CCHKGSTVMHRESLLSDLSFKETSPRAIESNLLP"
     misc_feature    171..1166
                     /gene="ENPP6"
                     /note="Type I phosphodiesterase / nucleotide
                     pyrophosphatase; Region: Phosphodiest; pfam01663"
                     /db_xref="CDD:396300"
     misc_feature    order(189..191,303..308,369..371,672..674,684..686,
                     813..818)
                     /gene="ENPP6"
                     /note="active site"
                     /db_xref="CDD:293742"
     misc_feature    order(189..191,303..308,369..371,672..674,684..686,
                     816..818)
                     /gene="ENPP6"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:293742"
ORIGIN      
        1 cagcccctag aagagagaat agctacagat tctccatcct cagtctctgc aaagggacgg
       61 ctgtgccagc cgtgctcggg caggctcctg gcagcatggc agagaagctc ggggcgctcc
      121 tgctggccct tgttctcagc ctggcacagc cagccccggc ccgccggaag ctcctggtgt
      181 ttctgctgga tggttttcgc tctgactaca tcagtgatga ggtcctggag tccttgcctg
      241 gtttcaggga gattgtgagc aggggggtga aagcggatta cttgacccca gactttccca
      301 gtctctcgta ccccaattac tacagcctaa tgactggtcg ccattgtgaa gtccatcaga
      361 tgatcgggaa ctacatgtgg gaccccgcca ccaacaagtc atttgacata ggggtcaaca
      421 gagacagcct gatgcctctc tggtggaatg gatcagaacc tctgtggatc actctgacca
      481 aggccaaaag gaaggtctac atgtactact ggccaggctg tgaggttgag attcttggtg
      541 tcagacctac ttactgccta gaatataaaa atgtcccaac ggatatcaat tttgccaatg
      601 cagtcagcga tgctcttgac ttcttcaaga gcggccaggc ggacctggtg gccatctact
      661 acgagcgcat cgatgtggaa ggccaccact atgggccctc gtcgccacag aggaaagaag
      721 ccctgagggc cgtggacacc gtcctgaagt acatgaccac gtggatccag gagcgcgagc
      781 tgcaggacga cctcaatgtc atcatcttct cagatcacgg gatgactgac attttctgga
      841 tggacaaagt gattgagctg gataagtaca tcagcctcca tgacctgcag caggtgaagg
      901 accgagggcc ggttgtgagc ctgtggccgg cgcccgggaa gcattctgag atatataaca
      961 aattgagaac agtggagcac atgactgtct acaagaagga ggccatcccg agcaggttct
     1021 actacaagaa agggaaattt gtctctcctt tgaccttagt ggccgatgaa ggatggttca
     1081 taactgagaa tcgagagacg cttccattct ggatgaacag cactgacaag aggcaaggct
     1141 ggcagcgcgg atggcacgga tacgacaacg agctcaggga catgcggggc atcttcttgg
     1201 ccttcggacc cggttccatc cagtcctggg acctccatgt ggcaggaaaa tgggacacat
     1261 tcttgaactg gggagcaccc aggctaacca gtccctgcca gataggtggc ctggaagaag
     1321 agtatgcagc tggagtgggt ctggggagcc cggcaggaca gtcaaacttc tgtgaccaca
     1381 gcggctccgc agggcttgca gaaacgagca gcttcagatg gcccttgggt ccccaaggaa
     1441 agctctgttg tcacaaggga agcacagtta tgcacagaga gagtttgctg tctgatctgt
     1501 ctttcaaaga aacatctcca cgagccatag aaagcaacct cctaccataa gctagaacct
     1561 tccagatctc cttccaggtc cacaatccct tggccaggcc ctgcggacga ggcggatttt
     1621 ccagtcccaa gctgcctgga tgctgaatgc aactcctcca catcgtgact ccacgcctgt
     1681 ctctgccctg cccaggagtg accgtgacaa ctcgtttgct tgcctttccc tttcagattt
     1741 caaatccaac ttcagagccg ctcccatcag atccgtggat gtctacaacg tcatgtgcaa
     1801 cgtggcaggt gtcgcccccc tgcccaacaa cgggtcctgg tcccgggtga catgcatgct
     1861 gaaggacccg gccagctcgg ccctggctgt gcggccgggt gcctgcacgt tggccttggc
     1921 gctgctggcg ctgctgtcct gaactgctag cgcggtgtgt gccgtgcccc actggggagg
     1981 cctggccgtc tcctatttca ctaatagctt cgtcagttca gtcaaggcca tacaattgta
     2041 aatgtattag tcttggatgg ttctatatgt aaaagtcccc atttcttaaa aaaacaaaaa
     2101 caaaaccact ttgctttttc cggaggtaag gaaactccta gcttttcatt tgttcaacta
     2161 taggttattt tctcctttcg ttccgtgtac tcagatgaac taagcagggc ctccccctgt
     2221 agcgaccgga ccttgggcgg gtattccatg gaatcccggc ccctctctgt cccgctctgc
     2281 acaaagcagg cccctgtctg tgccctgtct aaacccagga gccgccctca gggtctacgg
     2341 ccaccatccc acactgctcc ttccgtctgg gacaaaggag gcccacgtga agcagtagct
     2401 gctatttcta actcagctcg tggggtttct tcacgttata caaagtccca gaaagggcat
     2461 atctgagctt ggctcaccca gcaatcaaaa tcaatgggaa ctgcagaatt catggaacaa
     2521 agtgaaagat acacgttcct tcccaaagtc tgagtgcacg aaagtttctc cctgcctgaa
     2581 agagcataag agtttccagt agatacgggc tttgtgagcc tccttgtatc gtggtgtgaa
     2641 catgcacacg gcaggcgctg gattgcctgt gggaaggctc actcagaggc tgcctctctt
     2701 tggaaacccg taccgagtgt agacactagc gacccccgac atcatcacgg gcggggaaag
     2761 gggtgtctgg ctgatgatgg tgtggacata cttaaagaaa tctcacgtca ttgcttgaaa
     2821 tggtgatgca gttaagcgta agtttgatgc accagtgtcc tggagcactg cttattcaac
     2881 aaccacagca aagtggaccc ctgagtgacc cagaattcca aggaaaatgg tggggcacgg
     2941 ggaatggcgg ccacatgatg gagtcaaatc ccagtcacta accacttagc cactggatta
     3001 ggaaacggtc tggtcaaagt gccacctcag agaccttaag aaaccccgaa gaagaggcac
     3061 tgagcctgag atgaaatgtt tttagtttag tcttctaagt ttgctgtagg agctcttgtt
     3121 gcaaaacaag ggataactgc atttctatat gatcagagtc atatacatat atcatcgcgt
     3181 taaaaatgag tttgcactaa acgaggcacg tctgcaaatg aggctttttg tcaggaaagg
     3241 gcaaaagatc aggtctcgtc aggacgatga agcccttatg tattgtttac cttgaaaaat
     3301 gaaaatgtat gctcaccctg attcaggaag gttgggaacc gttcctgggc cttgcatcat
     3361 gagagcaaag gatcactgct taaaaatacc aaatttacct tcacagaaga cttctaagga
     3421 tttatgtaat gggtctgtaa agtgccagac catcgaatca gctgggaggc aaatcagcct
     3481 ttgtgccctg gccggaagcc agttagtgct ttcggaacac tggcgctggt cgttgcaata
     3541 ggcatctatc gttcaaaggt ttctttctcc ttaaaggact gggttctact gagtccagtg
     3601 cggcccactg tgctcccttg tgaggaagga gacctaaaag aaacccagtg cagcccacag
     3661 gggcacagac agatacacag cctcggattt gtccttcctg ccccgttcta ccaatttttc
     3721 ccctccctcg tccttcacat cttcaagttc cataataaaa tttcagatat ttgtctgaca
     3781 aagtacagtt gctcaataag tagtcttgaa tagataaatg agaataagat acttttggaa
     3841 tcatgactat tggtaaataa taaagaaaat tcagacacta aatggagaaa aaaccttttt
     3901 acctaaagca atgcatatat tttagtggct taattatttg gctagaattt tttcttttga
     3961 tgtttgtttt aaaggtatgt tattttccca aggaaaattc tacttcctct aaacgcattt
     4021 tgtcccatcg gaacgatacc cgctaggacg atacacgcac cttgtctcct ggattatttt
     4081 cccacttcat cgctaattcc aggaggaagg taattggact gacctgcaaa tgccgaagac
     4141 agatgaaagg aatgatcttt aaatgaagga taagatgaat ggcgactttc cctgcccata
     4201 ggcctaatgg ccagaaccca attcacttaa cttctgaaga cttaaacatg aataagagca
     4261 ggcccaggga attcttcgta gccatcaaga gcccagactt gggctcaagt cccggctctc
     4321 tttactttaa aagggctctt ggaaatccac agcaggtctg aattcagcca cagacagcag
     4381 tttgcaaacc tgctgggact gaaagcgtca tctggccctc ttccagagac gcaggttcag
     4441 aggatctggc gtggacacga cacttctaag tcacgtgact ctaaggtctg ggtttgctct
     4501 caggagagat gggttctgat ttgaccttgg tagacctgag tctcctgaca gcaactttgt
     4561 aatctgccag ttttttcggg agccatcagg ctggcattgg ctactggtcc cagctgggtc
     4621 agatttccgc ccttcttaag ccaaagcggg tctgtaagcc ccagtgatgg agaggcttct
     4681 ccacacccaa gtccctgtga gtgtaagatc cccaacggtg ctaccagaca aactcactgt
     4741 tcaagacaca cagctctttt atgaattttc tgtgaaagtg ttttacgttt ctgtaaatat
     4801 cgagagattt ccaaatgtga tagtgtgttt aatctttgta agcaatctgt gatagaccaa
     4861 agtcagctct tgtaaactac ttactaggag gacgagagac ggtagccttg acagcctggt
     4921 tataaaacgt gggaaacttg gtctcaggtc tctgctatgg aagttatact tatgtgttgc
     4981 tttgaaatca taaaatagca cctagtgcgg tgcctcaaat gtttcataaa tgtcccataa
     5041 atatgtgttg aatgagaaaa agaatgaata tcactgagga gatttgctta cacagcagat
     5101 attctctctc tttgtctgca gttcctcaaa ttaaacaaac ctttccgtt
//
LOCUS       XM_032618385            4625 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ectonucleotide
            pyrophosphatase/phosphodiesterase 6 (ENPP6), transcript variant X2,
            mRNA.
ACCESSION   XM_032618385
VERSION     XM_032618385.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4625
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4625
                     /gene="ENPP6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 12 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746740"
     CDS             96..1418
                     /gene="ENPP6"
                     /codon_start=1
                     /product="glycerophosphocholine cholinephosphodiesterase
                     ENPP6 isoform X2"
                     /protein_id="XP_032474276.1"
                     /db_xref="GeneID:116746740"
                     /translation="MAEKLGALLLALVLSLAQPAPARRKLLVFLLDGFRSDYISDEVL
                     ESLPGFREIVSRGVKADYLTPDFPSLSYPNYYSLMTGRHCEVHQMIGNYMWDPATNKS
                     FDIGVNRDSLMPLWWNGSEPLWITLTKAKRKVYMYYWPGCEVEILGVRPTYCLEYKNV
                     PTDINFANAVSDALDFFKSGQADLVAIYYERIDVEGHHYGPSSPQRKEALRAVDTVLK
                     YMTTWIQERELQDDLNVIIFSDHGMTDIFWMDKVIELDKYISLHDLQQVKDRGPVVSL
                     WPAPGKHSEIYNKLRTVEHMTVYKKEAIPSRFYYKKGKFVSPLTLVADEGWFITENRE
                     TLPFWMNSTDKRQGWQRGWHGYDNELRDMRGIFLAFGPDFKSNFRAAPIRSVDVYNVM
                     CNVAGVAPLPNNGSWSRVTCMLKDPASSALAVRPGACTLALALLALLS"
     misc_feature    165..1286
                     /gene="ENPP6"
                     /note="Ectonucleotide pyrophosphatase/phosphodiesterase,
                     also called autotaxin; Region: Enpp; cd16018"
                     /db_xref="CDD:293742"
     misc_feature    order(189..191,303..308,369..371,672..674,684..686,
                     813..818,1155..1157)
                     /gene="ENPP6"
                     /note="active site"
                     /db_xref="CDD:293742"
     misc_feature    order(189..191,303..308,369..371,672..674,684..686,
                     816..818,1155..1157)
                     /gene="ENPP6"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:293742"
     misc_feature    1230..1238
                     /gene="ENPP6"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293742"
ORIGIN      
        1 cagcccctag aagagagaat agctacagat tctccatcct cagtctctgc aaagggacgg
       61 ctgtgccagc cgtgctcggg caggctcctg gcagcatggc agagaagctc ggggcgctcc
      121 tgctggccct tgttctcagc ctggcacagc cagccccggc ccgccggaag ctcctggtgt
      181 ttctgctgga tggttttcgc tctgactaca tcagtgatga ggtcctggag tccttgcctg
      241 gtttcaggga gattgtgagc aggggggtga aagcggatta cttgacccca gactttccca
      301 gtctctcgta ccccaattac tacagcctaa tgactggtcg ccattgtgaa gtccatcaga
      361 tgatcgggaa ctacatgtgg gaccccgcca ccaacaagtc atttgacata ggggtcaaca
      421 gagacagcct gatgcctctc tggtggaatg gatcagaacc tctgtggatc actctgacca
      481 aggccaaaag gaaggtctac atgtactact ggccaggctg tgaggttgag attcttggtg
      541 tcagacctac ttactgccta gaatataaaa atgtcccaac ggatatcaat tttgccaatg
      601 cagtcagcga tgctcttgac ttcttcaaga gcggccaggc ggacctggtg gccatctact
      661 acgagcgcat cgatgtggaa ggccaccact atgggccctc gtcgccacag aggaaagaag
      721 ccctgagggc cgtggacacc gtcctgaagt acatgaccac gtggatccag gagcgcgagc
      781 tgcaggacga cctcaatgtc atcatcttct cagatcacgg gatgactgac attttctgga
      841 tggacaaagt gattgagctg gataagtaca tcagcctcca tgacctgcag caggtgaagg
      901 accgagggcc ggttgtgagc ctgtggccgg cgcccgggaa gcattctgag atatataaca
      961 aattgagaac agtggagcac atgactgtct acaagaagga ggccatcccg agcaggttct
     1021 actacaagaa agggaaattt gtctctcctt tgaccttagt ggccgatgaa ggatggttca
     1081 taactgagaa tcgagagacg cttccattct ggatgaacag cactgacaag aggcaaggct
     1141 ggcagcgcgg atggcacgga tacgacaacg agctcaggga catgcggggc atcttcttgg
     1201 ccttcggacc cgatttcaaa tccaacttca gagccgctcc catcagatcc gtggatgtct
     1261 acaacgtcat gtgcaacgtg gcaggtgtcg cccccctgcc caacaacggg tcctggtccc
     1321 gggtgacatg catgctgaag gacccggcca gctcggccct ggctgtgcgg ccgggtgcct
     1381 gcacgttggc cttggcgctg ctggcgctgc tgtcctgaac tgctagcgcg gtgtgtgccg
     1441 tgccccactg gggaggcctg gccgtctcct atttcactaa tagcttcgtc agttcagtca
     1501 aggccataca attgtaaatg tattagtctt ggatggttct atatgtaaaa gtccccattt
     1561 cttaaaaaaa caaaaacaaa accactttgc tttttccgga ggtaaggaaa ctcctagctt
     1621 ttcatttgtt caactatagg ttattttctc ctttcgttcc gtgtactcag atgaactaag
     1681 cagggcctcc ccctgtagcg accggacctt gggcgggtat tccatggaat cccggcccct
     1741 ctctgtcccg ctctgcacaa agcaggcccc tgtctgtgcc ctgtctaaac ccaggagccg
     1801 ccctcagggt ctacggccac catcccacac tgctccttcc gtctgggaca aaggaggccc
     1861 acgtgaagca gtagctgcta tttctaactc agctcgtggg gtttcttcac gttatacaaa
     1921 gtcccagaaa gggcatatct gagcttggct cacccagcaa tcaaaatcaa tgggaactgc
     1981 agaattcatg gaacaaagtg aaagatacac gttccttccc aaagtctgag tgcacgaaag
     2041 tttctccctg cctgaaagag cataagagtt tccagtagat acgggctttg tgagcctcct
     2101 tgtatcgtgg tgtgaacatg cacacggcag gcgctggatt gcctgtggga aggctcactc
     2161 agaggctgcc tctctttgga aacccgtacc gagtgtagac actagcgacc cccgacatca
     2221 tcacgggcgg ggaaaggggt gtctggctga tgatggtgtg gacatactta aagaaatctc
     2281 acgtcattgc ttgaaatggt gatgcagtta agcgtaagtt tgatgcacca gtgtcctgga
     2341 gcactgctta ttcaacaacc acagcaaagt ggacccctga gtgacccaga attccaagga
     2401 aaatggtggg gcacggggaa tggcggccac atgatggagt caaatcccag tcactaacca
     2461 cttagccact ggattaggaa acggtctggt caaagtgcca cctcagagac cttaagaaac
     2521 cccgaagaag aggcactgag cctgagatga aatgttttta gtttagtctt ctaagtttgc
     2581 tgtaggagct cttgttgcaa aacaagggat aactgcattt ctatatgatc agagtcatat
     2641 acatatatca tcgcgttaaa aatgagtttg cactaaacga ggcacgtctg caaatgaggc
     2701 tttttgtcag gaaagggcaa aagatcaggt ctcgtcagga cgatgaagcc cttatgtatt
     2761 gtttaccttg aaaaatgaaa atgtatgctc accctgattc aggaaggttg ggaaccgttc
     2821 ctgggccttg catcatgaga gcaaaggatc actgcttaaa aataccaaat ttaccttcac
     2881 agaagacttc taaggattta tgtaatgggt ctgtaaagtg ccagaccatc gaatcagctg
     2941 ggaggcaaat cagcctttgt gccctggccg gaagccagtt agtgctttcg gaacactggc
     3001 gctggtcgtt gcaataggca tctatcgttc aaaggtttct ttctccttaa aggactgggt
     3061 tctactgagt ccagtgcggc ccactgtgct cccttgtgag gaaggagacc taaaagaaac
     3121 ccagtgcagc ccacaggggc acagacagat acacagcctc ggatttgtcc ttcctgcccc
     3181 gttctaccaa tttttcccct ccctcgtcct tcacatcttc aagttccata ataaaatttc
     3241 agatatttgt ctgacaaagt acagttgctc aataagtagt cttgaataga taaatgagaa
     3301 taagatactt ttggaatcat gactattggt aaataataaa gaaaattcag acactaaatg
     3361 gagaaaaaac ctttttacct aaagcaatgc atatatttta gtggcttaat tatttggcta
     3421 gaattttttc ttttgatgtt tgttttaaag gtatgttatt ttcccaagga aaattctact
     3481 tcctctaaac gcattttgtc ccatcggaac gatacccgct aggacgatac acgcaccttg
     3541 tctcctggat tattttccca cttcatcgct aattccagga ggaaggtaat tggactgacc
     3601 tgcaaatgcc gaagacagat gaaaggaatg atctttaaat gaaggataag atgaatggcg
     3661 actttccctg cccataggcc taatggccag aacccaattc acttaacttc tgaagactta
     3721 aacatgaata agagcaggcc cagggaattc ttcgtagcca tcaagagccc agacttgggc
     3781 tcaagtcccg gctctcttta ctttaaaagg gctcttggaa atccacagca ggtctgaatt
     3841 cagccacaga cagcagtttg caaacctgct gggactgaaa gcgtcatctg gccctcttcc
     3901 agagacgcag gttcagagga tctggcgtgg acacgacact tctaagtcac gtgactctaa
     3961 ggtctgggtt tgctctcagg agagatgggt tctgatttga ccttggtaga cctgagtctc
     4021 ctgacagcaa ctttgtaatc tgccagtttt ttcgggagcc atcaggctgg cattggctac
     4081 tggtcccagc tgggtcagat ttccgccctt cttaagccaa agcgggtctg taagccccag
     4141 tgatggagag gcttctccac acccaagtcc ctgtgagtgt aagatcccca acggtgctac
     4201 cagacaaact cactgttcaa gacacacagc tcttttatga attttctgtg aaagtgtttt
     4261 acgtttctgt aaatatcgag agatttccaa atgtgatagt gtgtttaatc tttgtaagca
     4321 atctgtgata gaccaaagtc agctcttgta aactacttac taggaggacg agagacggta
     4381 gccttgacag cctggttata aaacgtggga aacttggtct caggtctctg ctatggaagt
     4441 tatacttatg tgttgctttg aaatcataaa atagcaccta gtgcggtgcc tcaaatgttt
     4501 cataaatgtc ccataaatat gtgttgaatg agaaaaagaa tgaatatcac tgaggagatt
     4561 tgcttacaca gcagatattc tctctctttg tctgcagttc ctcaaattaa acaaaccttt
     4621 ccgtt
//
LOCUS       XM_032618386            4336 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ectonucleotide
            pyrophosphatase/phosphodiesterase 6 (ENPP6), transcript variant X3,
            mRNA.
ACCESSION   XM_032618386
VERSION     XM_032618386.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4336
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4336
                     /gene="ENPP6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746740"
     CDS             83..1261
                     /gene="ENPP6"
                     /codon_start=1
                     /product="glycerophosphocholine cholinephosphodiesterase
                     ENPP6 isoform X3"
                     /protein_id="XP_032474277.1"
                     /db_xref="GeneID:116746740"
                     /translation="MAEKLGALLLALVLSLAQPAPARRKLLVFLLDGFRSDYISDEVL
                     ESLPGFREIVSRGVKADYLTPDFPSLSYPNYYSLMTGRHCEVHQMIGNYMWDPATNKS
                     FDIGVNRDSLMPLWWNGSEPLWITLTKAKRKVYMYYWPGCEVEILGVRPTYCLEYKNV
                     PTDINFANAVSDALDFFKSGQADLVAIYYERIDVEGHHYGPSSPQRKEALRAVDTVLK
                     YMTTWIQERELQDDLNVIIFSDHGMTDIFWMDKVIELDKYISLHDLQQVKDRGPVVSL
                     WPAPGKHSEIYNKLRTVEHMTVYKKEAIPSRFYYKKGKFVSPLTLVADEGWFITENRE
                     TLPFWMNSTDKRQGWQRGWHGYDNELRDMRGIFLAFGPEQHVPVATGNAWREFQRKQE
                     "
     misc_feature    158..1153
                     /gene="ENPP6"
                     /note="Type I phosphodiesterase / nucleotide
                     pyrophosphatase; Region: Phosphodiest; pfam01663"
                     /db_xref="CDD:396300"
     misc_feature    order(176..178,290..295,356..358,659..661,671..673,
                     800..805)
                     /gene="ENPP6"
                     /note="active site"
                     /db_xref="CDD:293742"
     misc_feature    order(176..178,290..295,356..358,659..661,671..673,
                     803..805)
                     /gene="ENPP6"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:293742"
ORIGIN      
        1 agagaatagc tacagattct ccatcctcag tctctgcaaa gggacggctg tgccagccgt
       61 gctcgggcag gctcctggca gcatggcaga gaagctcggg gcgctcctgc tggcccttgt
      121 tctcagcctg gcacagccag ccccggcccg ccggaagctc ctggtgtttc tgctggatgg
      181 ttttcgctct gactacatca gtgatgaggt cctggagtcc ttgcctggtt tcagggagat
      241 tgtgagcagg ggggtgaaag cggattactt gaccccagac tttcccagtc tctcgtaccc
      301 caattactac agcctaatga ctggtcgcca ttgtgaagtc catcagatga tcgggaacta
      361 catgtgggac cccgccacca acaagtcatt tgacataggg gtcaacagag acagcctgat
      421 gcctctctgg tggaatggat cagaacctct gtggatcact ctgaccaagg ccaaaaggaa
      481 ggtctacatg tactactggc caggctgtga ggttgagatt cttggtgtca gacctactta
      541 ctgcctagaa tataaaaatg tcccaacgga tatcaatttt gccaatgcag tcagcgatgc
      601 tcttgacttc ttcaagagcg gccaggcgga cctggtggcc atctactacg agcgcatcga
      661 tgtggaaggc caccactatg ggccctcgtc gccacagagg aaagaagccc tgagggccgt
      721 ggacaccgtc ctgaagtaca tgaccacgtg gatccaggag cgcgagctgc aggacgacct
      781 caatgtcatc atcttctcag atcacgggat gactgacatt ttctggatgg acaaagtgat
      841 tgagctggat aagtacatca gcctccatga cctgcagcag gtgaaggacc gagggccggt
      901 tgtgagcctg tggccggcgc ccgggaagca ttctgagata tataacaaat tgagaacagt
      961 ggagcacatg actgtctaca agaaggaggc catcccgagc aggttctact acaagaaagg
     1021 gaaatttgtc tctcctttga ccttagtggc cgatgaagga tggttcataa ctgagaatcg
     1081 agagacgctt ccattctgga tgaacagcac tgacaagagg caaggctggc agcgcggatg
     1141 gcacggatac gacaacgagc tcagggacat gcggggcatc ttcttggcct tcggacccga
     1201 acaacatgtt ccagttgcta cgggcaatgc atggagagaa tttcagagaa aacaggagta
     1261 acacctgtta ctgaaagaag gcatcagctc tagagcagag gagctggtgt tgggagcctc
     1321 acccactgcc tcctctggga tcttgctctt ggccatttga tgtctccacg cctgtcggtt
     1381 ctttgcctgg cctgtgggat tatgtggcag caaaagcaag gctgatcaca ttactcacct
     1441 ggttaaaaaa ccacccttgt ctccctttcc tgtgtaatta aattccaaat tctgcttccc
     1501 atcgttttct acagtttgac ttccccctac gtctctcaat gcttcatctc aaatttctca
     1561 gcttagcccc tgaatgtgcc agtgtcaact ctcttacgtt ggccccatgt ctgggatgga
     1621 ccttcccact ctccatctag caaactttca tttatccttc agagcctaga ctccctgtaa
     1681 ggcttttgtg ctttcacatt cttttcttgt ttcatttatc gcaaagcaag tcacattgcc
     1741 ttgtaataat ttgttgtcaa gtgttctcca actaggctgt aagttaagca gaatgccagg
     1801 attgaatctt cttttttgga gtctccaaac caaatctgca gcaccaacaa agtctgccac
     1861 aaaatagttg ataattgcct gatgaaatga atgaattatg gaaggaagga aggaaggaag
     1921 gaaggaagga aggaggggaa gaggttagga cactctggtt agttcaccta aatctggaca
     1981 gagcttctca cagtaacaat gggttggaaa agccagagct aggaaacatt ttgtagaggg
     2041 tagaaggatt tgacagatga ctaatgtgtg acacgggatc cagagggcag gggtttcttt
     2101 ttcaacattt cagcgggccc cctctttagc catgaacacg aggaagtata gcagatgaga
     2161 agaaaggaag aaaagataaa tgagccctgt cttcaccatg cttaattcaa cttttcaaca
     2221 agatgctaac acaagcctgt actgtcatct ccctacggct tggaagagac agaagaaggg
     2281 ggttcagagc cttggatgct aaagacgtag catgtggaga agaaggaaga gtcccagtca
     2341 ccagctccct ccctcccatg ccttctgatt ctgatctgcc tttgctactg agaagtgagg
     2401 agtggatgac aggaggaagt ggagaaaagc cttcagaggg aggaaagcgg tgtttatgaa
     2461 atccccttcc tggaagagct gtgtttccac ccctgccctt ctgctgctca ggaaagtctg
     2521 gcctcagtgt ggtgtcagca ggacaggcag gagctgaatt tccaccatat tccagaacca
     2581 ggtggtgttc agaaggaccc ctccactccc acagtggcat ctggagggga tggggcagtc
     2641 tatccactag aagcccttga aactgaccag tcaggtcgca atgctgggac aagaccctaa
     2701 actgaggaga ctctgctgaa agttaaatca aaatccagca agatagggac aatagagatg
     2761 aaagaaagag aaggtccaga taagcatggc agaaaaaaag agagcctgaa aaaaaaaaga
     2821 gagcctggaa tttctagcca gaaatgtcat atttttgaat actacatgaa aacaacgaag
     2881 aagatactgt ataaaatcag aaagactatc ctgcaccaca tctccttcta aagtttagaa
     2941 aaattaattt caaataaaaa tgtaaaaagt attgaagtca aattccatat taagatacta
     3001 tttttaaatg ataataagga gcagaataat agtccaacaa tcagtgaaat cgtgccagaa
     3061 agacctgatc ataaagcaga ctgaaaccat gacttactat ttcaagatga gccaaaatac
     3121 attaagaaaa caatatgaaa gaacaacata aatcaaatta taagaaggca gaaagggttg
     3181 aactcaagaa agaataagat ataaaaataa tttcagaaat aaaatctaag ctagatggac
     3241 cagagagtta ataatcacaa cagataatgc cttaggagga atagaaggta aaagggaggg
     3301 ttaaaaaatc aaaattaaaa gattaaaaaa aaagactcaa gagaaagtga caaatactga
     3361 agacaagtaa agaacactga atatacagta acatgaatcc aagaagaaga aaaccaaagc
     3421 aaaggaatag aataaatatt aaaactgtaa tgcaaggaaa ctttcttgaa attaaaaaga
     3481 aaaaagttaa cactatatac tgaaagaata cttcacatat ctgagactgt caaccagaac
     3541 cactaatatc aaacccacaa attactggat tttaagacca agaaaaaatc ctttgggcat
     3601 ctaagcaaaa agaggacgtg atttataata aaaatgcctt ttccaacaca ataggacaga
     3661 agaaaatgga ctaacatatt tgagatacta atgaaaagaa aatgcatgtc aaggattttt
     3721 atatccagca aaactgactt tcaagtatga aaggttcaaa ttgttatcaa taggaaagaa
     3781 ttcaggaaat actgtgccca cgagtctttt ctgatgaatc tattagagca cacgcttcag
     3841 acaatcaaac tgaccaggga cacatggaca taaggcctag tgatgaacat gaaataaaca
     3901 gttattacag aacaaggatg agagggcagt gtgcagtgtc tatgtgcttt ggcaatgtag
     3961 atatggtata actttttaag tggagggaag ataaatgggg agagacttcg caaaaaaaaa
     4021 aaaattaact cttgtcagta gtcttattgg tggtgggaat atctgtactc ttgtcctgag
     4081 actattgtgt aagtaatgta gagtaaagca tgagagttaa tatgggatat tctaattata
     4141 tcattcctgt gtcattgaga accaggattt gcagagtgga agaaaagaga tgcagatata
     4201 aactggaggg tatataaaac tcctatgtcc tgaacttgaa ttagaaatat cattgtacaa
     4261 catggggaat atatcccatt tttataatga ctataaatgg agtataacct ttaaaaatta
     4321 tgagtcacta tattgt
//
LOCUS       XM_032618387            2374 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ectonucleotide
            pyrophosphatase/phosphodiesterase 6 (ENPP6), transcript variant X4,
            mRNA.
ACCESSION   XM_032618387
VERSION     XM_032618387.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2374
                     /gene="ENPP6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746740"
     CDS             83..1237
                     /gene="ENPP6"
                     /codon_start=1
                     /product="glycerophosphocholine cholinephosphodiesterase
                     ENPP6 isoform X4"
                     /protein_id="XP_032474278.1"
                     /db_xref="GeneID:116746740"
                     /translation="MAEKLGALLLALVLSLAQPAPARRKLLVFLLDGFRSDYISDEVL
                     ESLPGFREIVSRGVKADYLTPDFPSLSYPNYYSLMTGRHCEVHQMIGNYMWDPATNKS
                     FDIGVNRDSLMPLWWNGSEPLWITLTKAKRKVYMYYWPGCEVEILGVRPTYCLEYKNV
                     PTDINFANAVSDALDFFKSGQADLVAIYYERIDVEGHHYGPSSPQRKEALRAVDTVLK
                     YMTTWIQERELQDDLNVIIFSDHGMTDIFWMDKVIELDKYISLHDLQQVKDRGPVVSL
                     WPAPGKHSEIYNKLRTVEHMTVYKKEAIPSRFYYKKGKFVSPLTLVADEGWFITENRE
                     TLPFWMNSTDKRQGWQRGWHGYDNELRDMRGIFLAFGPGMLFSQGKFYFL"
     misc_feature    158..1153
                     /gene="ENPP6"
                     /note="Type I phosphodiesterase / nucleotide
                     pyrophosphatase; Region: Phosphodiest; pfam01663"
                     /db_xref="CDD:396300"
     misc_feature    order(176..178,290..295,356..358,659..661,671..673,
                     800..805)
                     /gene="ENPP6"
                     /note="active site"
                     /db_xref="CDD:293742"
     misc_feature    order(176..178,290..295,356..358,659..661,671..673,
                     803..805)
                     /gene="ENPP6"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:293742"
ORIGIN      
        1 agagaatagc tacagattct ccatcctcag tctctgcaaa gggacggctg tgccagccgt
       61 gctcgggcag gctcctggca gcatggcaga gaagctcggg gcgctcctgc tggcccttgt
      121 tctcagcctg gcacagccag ccccggcccg ccggaagctc ctggtgtttc tgctggatgg
      181 ttttcgctct gactacatca gtgatgaggt cctggagtcc ttgcctggtt tcagggagat
      241 tgtgagcagg ggggtgaaag cggattactt gaccccagac tttcccagtc tctcgtaccc
      301 caattactac agcctaatga ctggtcgcca ttgtgaagtc catcagatga tcgggaacta
      361 catgtgggac cccgccacca acaagtcatt tgacataggg gtcaacagag acagcctgat
      421 gcctctctgg tggaatggat cagaacctct gtggatcact ctgaccaagg ccaaaaggaa
      481 ggtctacatg tactactggc caggctgtga ggttgagatt cttggtgtca gacctactta
      541 ctgcctagaa tataaaaatg tcccaacgga tatcaatttt gccaatgcag tcagcgatgc
      601 tcttgacttc ttcaagagcg gccaggcgga cctggtggcc atctactacg agcgcatcga
      661 tgtggaaggc caccactatg ggccctcgtc gccacagagg aaagaagccc tgagggccgt
      721 ggacaccgtc ctgaagtaca tgaccacgtg gatccaggag cgcgagctgc aggacgacct
      781 caatgtcatc atcttctcag atcacgggat gactgacatt ttctggatgg acaaagtgat
      841 tgagctggat aagtacatca gcctccatga cctgcagcag gtgaaggacc gagggccggt
      901 tgtgagcctg tggccggcgc ccgggaagca ttctgagata tataacaaat tgagaacagt
      961 ggagcacatg actgtctaca agaaggaggc catcccgagc aggttctact acaagaaagg
     1021 gaaatttgtc tctcctttga ccttagtggc cgatgaagga tggttcataa ctgagaatcg
     1081 agagacgctt ccattctgga tgaacagcac tgacaagagg caaggctggc agcgcggatg
     1141 gcacggatac gacaacgagc tcagggacat gcggggcatc ttcttggcct tcggacccgg
     1201 tatgttattt tcccaaggaa aattctactt cctctaaacg cattttgtcc catcggaacg
     1261 atacccgcta ggacgataca cgcaccttgt ctcctggatt attttcccac ttcatcgcta
     1321 attccaggag gaaggtaatt ggactgacct gcaaatgccg aagacagatg aaaggaatga
     1381 tctttaaatg aaggataaga tgaatggcga ctttccctgc ccataggcct aatggccaga
     1441 acccaattca cttaacttct gaagacttaa acatgaataa gagcaggccc agggaattct
     1501 tcgtagccat caagagccca gacttgggct caagtcccgg ctctctttac tttaaaaggg
     1561 ctcttggaaa tccacagcag gtctgaattc agccacagac agcagtttgc aaacctgctg
     1621 ggactgaaag cgtcatctgg ccctcttcca gagacgcagg ttcagaggat ctggcgtgga
     1681 cacgacactt ctaagtcacg tgactctaag gtctgggttt gctctcagga gagatgggtt
     1741 ctgatttgac cttggtagac ctgagtctcc tgacagcaac tttgtaatct gccagttttt
     1801 tcgggagcca tcaggctggc attggctact ggtcccagct gggtcagatt tccgcccttc
     1861 ttaagccaaa gcgggtctgt aagccccagt gatggagagg cttctccaca cccaagtccc
     1921 tgtgagtgta agatccccaa cggtgctacc agacaaactc actgttcaag acacacagct
     1981 cttttatgaa ttttctgtga aagtgtttta cgtttctgta aatatcgaga gatttccaaa
     2041 tgtgatagtg tgtttaatct ttgtaagcaa tctgtgatag accaaagtca gctcttgtaa
     2101 actacttact aggaggacga gagacggtag ccttgacagc ctggttataa aacgtgggaa
     2161 acttggtctc aggtctctgc tatggaagtt atacttatgt gttgctttga aatcataaaa
     2221 tagcacctag tgcggtgcct caaatgtttc ataaatgtcc cataaatatg tgttgaatga
     2281 gaaaaagaat gaatatcact gaggagattt gcttacacag cagatattct ctctctttgt
     2341 ctgcagttcc tcaaattaaa caaacctttc cgtt
//
LOCUS       XM_032618389            1254 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ectonucleotide
            pyrophosphatase/phosphodiesterase 6 (ENPP6), transcript variant X5,
            mRNA.
ACCESSION   XM_032618389
VERSION     XM_032618389.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1254
                     /gene="ENPP6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746740"
     CDS             83..1219
                     /gene="ENPP6"
                     /codon_start=1
                     /product="glycerophosphocholine cholinephosphodiesterase
                     ENPP6 isoform X5"
                     /protein_id="XP_032474280.1"
                     /db_xref="GeneID:116746740"
                     /translation="MAEKLGALLLALVLSLAQPAPARRKLLVFLLDGFRSDYISDEVL
                     ESLPGFREIVSRGVKADYLTPDFPSLSYPNYYSLMTGRHCEVHQMIGNYMWDPATNKS
                     FDIGVNRDSLMPLWWNGSEPLWITLTKAKRKVYMYYWPGCEVEILGVRPTYCLEYKNV
                     PTDINFANAVSDALDFFKSGQADLVAIYYERIDVEGHHYGPSSPQRKEALRAVDTVLK
                     YMTTWIQERELQDDLNVIIFSDHGMTDIFWMDKVIELDKYISLHDLQQVKDRGPVVSL
                     WPAPGKHSEIYNKLRTVEHMTVYKKEAIPSRFYYKKGKFVSPLTLVADEGWFITENRE
                     TLPFWMNSTDKRQGWQRGWHGYDNELRDMRGIFLAFGPVEFSFL"
     misc_feature    158..1153
                     /gene="ENPP6"
                     /note="Type I phosphodiesterase / nucleotide
                     pyrophosphatase; Region: Phosphodiest; pfam01663"
                     /db_xref="CDD:396300"
     misc_feature    order(176..178,290..295,356..358,659..661,671..673,
                     800..805)
                     /gene="ENPP6"
                     /note="active site"
                     /db_xref="CDD:293742"
     misc_feature    order(176..178,290..295,356..358,659..661,671..673,
                     803..805)
                     /gene="ENPP6"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:293742"
ORIGIN      
        1 agagaatagc tacagattct ccatcctcag tctctgcaaa gggacggctg tgccagccgt
       61 gctcgggcag gctcctggca gcatggcaga gaagctcggg gcgctcctgc tggcccttgt
      121 tctcagcctg gcacagccag ccccggcccg ccggaagctc ctggtgtttc tgctggatgg
      181 ttttcgctct gactacatca gtgatgaggt cctggagtcc ttgcctggtt tcagggagat
      241 tgtgagcagg ggggtgaaag cggattactt gaccccagac tttcccagtc tctcgtaccc
      301 caattactac agcctaatga ctggtcgcca ttgtgaagtc catcagatga tcgggaacta
      361 catgtgggac cccgccacca acaagtcatt tgacataggg gtcaacagag acagcctgat
      421 gcctctctgg tggaatggat cagaacctct gtggatcact ctgaccaagg ccaaaaggaa
      481 ggtctacatg tactactggc caggctgtga ggttgagatt cttggtgtca gacctactta
      541 ctgcctagaa tataaaaatg tcccaacgga tatcaatttt gccaatgcag tcagcgatgc
      601 tcttgacttc ttcaagagcg gccaggcgga cctggtggcc atctactacg agcgcatcga
      661 tgtggaaggc caccactatg ggccctcgtc gccacagagg aaagaagccc tgagggccgt
      721 ggacaccgtc ctgaagtaca tgaccacgtg gatccaggag cgcgagctgc aggacgacct
      781 caatgtcatc atcttctcag atcacgggat gactgacatt ttctggatgg acaaagtgat
      841 tgagctggat aagtacatca gcctccatga cctgcagcag gtgaaggacc gagggccggt
      901 tgtgagcctg tggccggcgc ccgggaagca ttctgagata tataacaaat tgagaacagt
      961 ggagcacatg actgtctaca agaaggaggc catcccgagc aggttctact acaagaaagg
     1021 gaaatttgtc tctcctttga ccttagtggc cgatgaagga tggttcataa ctgagaatcg
     1081 agagacgctt ccattctgga tgaacagcac tgacaagagg caaggctggc agcgcggatg
     1141 gcacggatac gacaacgagc tcagggacat gcggggcatc ttcttggcct tcggacccgt
     1201 tgaattctca tttctgtaga acaacatgtt ccagttgcta cgggcaatgc atgg
//
LOCUS       XM_032618390            8821 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ectonucleotide
            pyrophosphatase/phosphodiesterase 6 (ENPP6), transcript variant X6,
            mRNA.
ACCESSION   XM_032618390
VERSION     XM_032618390.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8821
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8821
                     /gene="ENPP6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746740"
     CDS             82..1206
                     /gene="ENPP6"
                     /codon_start=1
                     /product="glycerophosphocholine cholinephosphodiesterase
                     ENPP6 isoform X6"
                     /protein_id="XP_032474281.1"
                     /db_xref="GeneID:116746740"
                     /translation="MAEKLGALLLALVLSLAQPAPARRKLLVFLLDGFRSDYISDEVL
                     ESLPGFREIVSRGVKADYLTPDFPSLSYPNYYSLMTGRHCEVHQMIGNYMWDPATNKS
                     FDIGVNRDSLMPLWWNGSEPLWITLTKAKRKVYMYYWPGCEVEILGVRPTYCLEYKNV
                     PTDINFANAVSDALDFFKSGQADLVAIYYERIDVEGHHYGPSSPQRKEALRAVDTVLK
                     YMTTWIQERELQDDLNVIIFSDHGMTDIFWMDKVIELDKYISLHDLQQVKDRGPVVSL
                     WPAPGKHSEIYNKLRTVEHMTVYKKEAIPSRFYYKKGKFVSPLTLVADEGWFITENRE
                     TLPFWMNSTDKRQGWQRGWHGYDNELRDMRGIFLAFGPAI"
     misc_feature    157..1152
                     /gene="ENPP6"
                     /note="Type I phosphodiesterase / nucleotide
                     pyrophosphatase; Region: Phosphodiest; pfam01663"
                     /db_xref="CDD:396300"
     misc_feature    order(175..177,289..294,355..357,658..660,670..672,
                     799..804)
                     /gene="ENPP6"
                     /note="active site"
                     /db_xref="CDD:293742"
     misc_feature    order(175..177,289..294,355..357,658..660,670..672,
                     802..804)
                     /gene="ENPP6"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:293742"
ORIGIN      
        1 gagaatagct acagattctc catcctcagt ctctgcaaag ggacggctgt gccagccgtg
       61 ctcgggcagg ctcctggcag catggcagag aagctcgggg cgctcctgct ggcccttgtt
      121 ctcagcctgg cacagccagc cccggcccgc cggaagctcc tggtgtttct gctggatggt
      181 tttcgctctg actacatcag tgatgaggtc ctggagtcct tgcctggttt cagggagatt
      241 gtgagcaggg gggtgaaagc ggattacttg accccagact ttcccagtct ctcgtacccc
      301 aattactaca gcctaatgac tggtcgccat tgtgaagtcc atcagatgat cgggaactac
      361 atgtgggacc ccgccaccaa caagtcattt gacatagggg tcaacagaga cagcctgatg
      421 cctctctggt ggaatggatc agaacctctg tggatcactc tgaccaaggc caaaaggaag
      481 gtctacatgt actactggcc aggctgtgag gttgagattc ttggtgtcag acctacttac
      541 tgcctagaat ataaaaatgt cccaacggat atcaattttg ccaatgcagt cagcgatgct
      601 cttgacttct tcaagagcgg ccaggcggac ctggtggcca tctactacga gcgcatcgat
      661 gtggaaggcc accactatgg gccctcgtcg ccacagagga aagaagccct gagggccgtg
      721 gacaccgtcc tgaagtacat gaccacgtgg atccaggagc gcgagctgca ggacgacctc
      781 aatgtcatca tcttctcaga tcacgggatg actgacattt tctggatgga caaagtgatt
      841 gagctggata agtacatcag cctccatgac ctgcagcagg tgaaggaccg agggccggtt
      901 gtgagcctgt ggccggcgcc cgggaagcat tctgagatat ataacaaatt gagaacagtg
      961 gagcacatga ctgtctacaa gaaggaggcc atcccgagca ggttctacta caagaaaggg
     1021 aaatttgtct ctcctttgac cttagtggcc gatgaaggat ggttcataac tgagaatcga
     1081 gagacgcttc cattctggat gaacagcact gacaagaggc aaggctggca gcgcggatgg
     1141 cacggatacg acaacgagct cagggacatg cggggcatct tcttggcctt cggacccgcc
     1201 atctgatgtc caggaaggct tatcaggcgc caggttgctg acagctgcgt gtcctggagc
     1261 tgacgcgatc gcttcacagg gtctgactct tccacagttc ctccctggct agagcaccca
     1321 cccctgtgca ggtcattcgg tttagggccc accagaagct aggatgtgct caagggcagg
     1381 cgaggaaatg attctgtgac tgactttgag aataagccag aatgactcgg gctgtcttgg
     1441 atgaaagcaa atttactgtg ccttccttga cctacattcc cagggcaggg agagagggga
     1501 gatggagaga gcctctttgg ttatttgctt taataaacac agcactgtaa attcacattt
     1561 tagaaaagtt tatcaaacac tctaaagatc atactaccac ctgaataccc ccttttaaaa
     1621 aaatagagta aaaatcagtc aacagccatc cacaatcagt ggactggttc atgagctact
     1681 aaccttcctt cctgctgtcc acactcctta ttaaacacag taagcttacc ccaagatcca
     1741 tattccaagt tcctttttct gcatgttgat caaaatgttt cagcccatga aagtccatgc
     1801 tttcctttca aattataggt tagagatcac gcctggaagc cctgcccttc tccttgatgt
     1861 aacaggacag agaaatgtgt cagccccctt cattccatcc acctcaggtc actctaccta
     1921 ccacaagata gctgctgaga actgcaaggt gccagcttct gcaccctcct tgggcacctc
     1981 tgggagcctg agcttaggga acatgtcggt ccaaatcatt gcccatgtgt catccaggtt
     2041 cccgtgtcct taagtaagcg tcagcaccag tggcagcaaa catttatgga gcacaactgg
     2101 ggtcatgaca ctggcctaag agagttcaga ggacgcccca gcatgacgcc atcaactgat
     2161 aacagttaac aggccctccc tgttagccag gccccgggct agagctgcgc agctcaaaag
     2221 ccaagtgaat tcaggatgga gccttgagga tgttgaggtg acagctgcta gatcaggtta
     2281 gagacgctcc agggccatgg ccttcatatg ggggaacatt agccagcagg gctttcattc
     2341 aaagacatcg cctcctcttt ccccagaaga gagggatcag atcatgaatg cgaaacagtt
     2401 gtcggttgga gtgtttacga gtaagagtct cgggagattt taaagcagaa gcacgtctag
     2461 cgtcaaaccg aaaactttaa acaaagtacc caaagctgca atagcttaaa ttcagtgggg
     2521 agattttgtc cattagcaaa ggcctccatc atacgttcct ttaaaactaa aagcctaagt
     2581 cttttataga cagaaagacg acccctgatg aaactggact gggctaattg caaaaatgtt
     2641 tccaggcaga tacagccttg agagcctccc acaaaccatc acgtttctgg ctctaattct
     2701 catgaaagat tgaacagctt tacgcactga ctgtttactc agaagaaaat ttaagagcga
     2761 ggcctttaat agctatctag ctgcactttg agataaaggt acatccctcc tgattaattg
     2821 taggtacttc tcgctcatgg aaggacgctg agcatcgctg cggctgcccc gatacagctt
     2881 tagaagtcag taagtctggt ccagctaaga gaaagggaaa taattctgga agatagcctc
     2941 tctctgctta atcccagttt ctaatttgaa caacctagtc ttgctgtgga gaactccaca
     3001 ttcgagataa gacagcagga gtgtgactca gtgagctgcc agcgagctag caagcctcac
     3061 ttggaaagca gcccaaggtg ttcaggtaca gcgggagcct ccagaacctt ctctctttag
     3121 gagaaacagt ttaaatatcc aaaaaatgta aacccacgga aataacttgg attcccattc
     3181 caggttcaca caccatcttg agctagcagg gcttgtctgg cctctcccaa ttggatcagg
     3241 tattgttttg ctgttcagga attttctaga agctctcatt ccagtctgga tcatctctgc
     3301 actgggccca aaatcccagc cctgtagacc gggaagccgt gaaccagatg gagtgggaaa
     3361 gaaaccccaa ttctccttcc tgcttacatg taccggattt gactttgtac tttcaacata
     3421 aaaagatgat cttttataac atttattttt tgtcagtaga gcttgatctc aaattttctt
     3481 gccaaatgtt aaagaaggag atgtctgaaa ggctggggac ggctgtcttg gatatgctat
     3541 tgtctgccgc cctcccacgt gacaggacat ggccaccagg tgatgtggca ggatgatctc
     3601 acatccaggt ccacggcaag tcagagggag gggagtggct cccacgtccc tgggacaacc
     3661 ttgccacaat cagctgcagc tggtcctcct ctggggcagc gttaccacca ccctctctaa
     3721 ctgtaatgtt ttccttgata ttggaaaggt tggcttccag ggcagcctct acgttctcct
     3781 ttccaggagg ttctggattt tctaaagtga gtgtttaccc tgaggcgatg ctgactctta
     3841 ccctccctgc cctaaaagta aagtgaaccc ttcaaataat ctatagggtg aatattctca
     3901 atccatactt tcccttgctg ggcgtttatt ctattactaa taacagctcc catttatcga
     3961 gcacacacag agtggctgga actaggattt aggcgccatc tccatgcctg tcccctgagg
     4021 ttacccagct agtaagtggc tacaggctgg ttgtagagcc cgtgaacctc tttatactga
     4081 attcaacttt aattcttcaa aatgagcaaa acccgtcact tgggaatttg ccctgggtct
     4141 aacatatgct gtggcagagt tttcagtgta tagtctcctt ctgtatttat aattgcaggg
     4201 ttaatacaag agtagaattt ggtgtggaca cttctgggct atgttgctgt ttgtttgctc
     4261 tttaaatcaa gtatatgtga tcattttagc agagcaatta taaagattat tttctaagat
     4321 agaaaacttg gctttacagc ccccaaacta cctgttttaa aaaaatattt tttagaggga
     4381 ctaaaatcac acgcatgggc ctttattgat ggataaaact ccttcctgaa ttcagcttct
     4441 taagttttgg gtactttgtt ggaagctctg gttgggagct tatgaatatt attgaagtct
     4501 catactcact ctttaaacac ttttcattca gcatcttttc tgcctcctgt ggagaaagag
     4561 agggtccact ttggactgaa gtccctcctt cagcaccctt acttgctatg ctgtgaatag
     4621 ctagccaggc cctcgggggc ccgtgtccct gtggagttgg cacagccttg ggtagaggca
     4681 cagccctctc cctcatgagc tcccttgagc cttcactcag gtctctaact ccactaccag
     4741 tttcgttatt ttccccacag ttaagttact ctatctgcca gtgaaaggct cccaaggaat
     4801 gtgcaactga tcttccagac atacttagga gaccgttgct attgcttgtg aactaggcac
     4861 actgaggaaa ctatataatt tcaggttcca tccagtcctg ggacctccat gtggcaggaa
     4921 aatgggacac attcttgaac tggggagcac ccaggctaac cagtccctgc cagataggtg
     4981 gcctggaaga agagtatgca gctggagtgg gtctggggag cccggcagga cagtcaaact
     5041 tctgtgacca cagcggctcc gcagggcttg cagaaacgag cagcttcaga tggcccttgg
     5101 gtccccaagg aaagctctgt tgtcacaagg gaagcacagt tatgcacaga gagagtttgc
     5161 tgtctgatct gtctttcaaa gaaacatctc cacgagccat agaaagcaac ctcctaccat
     5221 aagctagaac cttccagatc tccttccagg tccacaatcc cttggccagg ccctgcggac
     5281 gaggcggatt ttccagtccc aagctgcctg gatgctgaat gcaactcctc cacatcgtga
     5341 ctccacgcct gtctctgccc tgcccaggag tgaccgtgac aactcgtttg cttgcctttc
     5401 cctttcagat ttcaaatcca acttcagagc cgctcccatc agatccgtgg atgtctacaa
     5461 cgtcatgtgc aacgtggcag gtgtcgcccc cctgcccaac aacgggtcct ggtcccgggt
     5521 gacatgcatg ctgaaggacc cggccagctc ggccctggct gtgcggccgg gtgcctgcac
     5581 gttggccttg gcgctgctgg cgctgctgtc ctgaactgct agcgcggtgt gtgccgtgcc
     5641 ccactgggga ggcctggccg tctcctattt cactaatagc ttcgtcagtt cagtcaaggc
     5701 catacaattg taaatgtatt agtcttggat ggttctatat gtaaaagtcc ccatttctta
     5761 aaaaaacaaa aacaaaacca ctttgctttt tccggaggta aggaaactcc tagcttttca
     5821 tttgttcaac tataggttat tttctccttt cgttccgtgt actcagatga actaagcagg
     5881 gcctccccct gtagcgaccg gaccttgggc gggtattcca tggaatcccg gcccctctct
     5941 gtcccgctct gcacaaagca ggcccctgtc tgtgccctgt ctaaacccag gagccgccct
     6001 cagggtctac ggccaccatc ccacactgct ccttccgtct gggacaaagg aggcccacgt
     6061 gaagcagtag ctgctatttc taactcagct cgtggggttt cttcacgtta tacaaagtcc
     6121 cagaaagggc atatctgagc ttggctcacc cagcaatcaa aatcaatggg aactgcagaa
     6181 ttcatggaac aaagtgaaag atacacgttc cttcccaaag tctgagtgca cgaaagtttc
     6241 tccctgcctg aaagagcata agagtttcca gtagatacgg gctttgtgag cctccttgta
     6301 tcgtggtgtg aacatgcaca cggcaggcgc tggattgcct gtgggaaggc tcactcagag
     6361 gctgcctctc tttggaaacc cgtaccgagt gtagacacta gcgacccccg acatcatcac
     6421 gggcggggaa aggggtgtct ggctgatgat ggtgtggaca tacttaaaga aatctcacgt
     6481 cattgcttga aatggtgatg cagttaagcg taagtttgat gcaccagtgt cctggagcac
     6541 tgcttattca acaaccacag caaagtggac ccctgagtga cccagaattc caaggaaaat
     6601 ggtggggcac ggggaatggc ggccacatga tggagtcaaa tcccagtcac taaccactta
     6661 gccactggat taggaaacgg tctggtcaaa gtgccacctc agagacctta agaaaccccg
     6721 aagaagaggc actgagcctg agatgaaatg tttttagttt agtcttctaa gtttgctgta
     6781 ggagctcttg ttgcaaaaca agggataact gcatttctat atgatcagag tcatatacat
     6841 atatcatcgc gttaaaaatg agtttgcact aaacgaggca cgtctgcaaa tgaggctttt
     6901 tgtcaggaaa gggcaaaaga tcaggtctcg tcaggacgat gaagccctta tgtattgttt
     6961 accttgaaaa atgaaaatgt atgctcaccc tgattcagga aggttgggaa ccgttcctgg
     7021 gccttgcatc atgagagcaa aggatcactg cttaaaaata ccaaatttac cttcacagaa
     7081 gacttctaag gatttatgta atgggtctgt aaagtgccag accatcgaat cagctgggag
     7141 gcaaatcagc ctttgtgccc tggccggaag ccagttagtg ctttcggaac actggcgctg
     7201 gtcgttgcaa taggcatcta tcgttcaaag gtttctttct ccttaaagga ctgggttcta
     7261 ctgagtccag tgcggcccac tgtgctccct tgtgaggaag gagacctaaa agaaacccag
     7321 tgcagcccac aggggcacag acagatacac agcctcggat ttgtccttcc tgccccgttc
     7381 taccaatttt tcccctccct cgtccttcac atcttcaagt tccataataa aatttcagat
     7441 atttgtctga caaagtacag ttgctcaata agtagtcttg aatagataaa tgagaataag
     7501 atacttttgg aatcatgact attggtaaat aataaagaaa attcagacac taaatggaga
     7561 aaaaaccttt ttacctaaag caatgcatat attttagtgg cttaattatt tggctagaat
     7621 tttttctttt gatgtttgtt ttaaaggtat gttattttcc caaggaaaat tctacttcct
     7681 ctaaacgcat tttgtcccat cggaacgata cccgctagga cgatacacgc accttgtctc
     7741 ctggattatt ttcccacttc atcgctaatt ccaggaggaa ggtaattgga ctgacctgca
     7801 aatgccgaag acagatgaaa ggaatgatct ttaaatgaag gataagatga atggcgactt
     7861 tccctgccca taggcctaat ggccagaacc caattcactt aacttctgaa gacttaaaca
     7921 tgaataagag caggcccagg gaattcttcg tagccatcaa gagcccagac ttgggctcaa
     7981 gtcccggctc tctttacttt aaaagggctc ttggaaatcc acagcaggtc tgaattcagc
     8041 cacagacagc agtttgcaaa cctgctggga ctgaaagcgt catctggccc tcttccagag
     8101 acgcaggttc agaggatctg gcgtggacac gacacttcta agtcacgtga ctctaaggtc
     8161 tgggtttgct ctcaggagag atgggttctg atttgacctt ggtagacctg agtctcctga
     8221 cagcaacttt gtaatctgcc agttttttcg ggagccatca ggctggcatt ggctactggt
     8281 cccagctggg tcagatttcc gcccttctta agccaaagcg ggtctgtaag ccccagtgat
     8341 ggagaggctt ctccacaccc aagtccctgt gagtgtaaga tccccaacgg tgctaccaga
     8401 caaactcact gttcaagaca cacagctctt ttatgaattt tctgtgaaag tgttttacgt
     8461 ttctgtaaat atcgagagat ttccaaatgt gatagtgtgt ttaatctttg taagcaatct
     8521 gtgatagacc aaagtcagct cttgtaaact acttactagg aggacgagag acggtagcct
     8581 tgacagcctg gttataaaac gtgggaaact tggtctcagg tctctgctat ggaagttata
     8641 cttatgtgtt gctttgaaat cataaaatag cacctagtgc ggtgcctcaa atgtttcata
     8701 aatgtcccat aaatatgtgt tgaatgagaa aaagaatgaa tatcactgag gagatttgct
     8761 tacacagcag atattctctc tctttgtctg cagttcctca aattaaacaa acctttccgt
     8821 t
//
LOCUS       XM_032618391            2485 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X1, mRNA.
ACCESSION   XM_032618391
VERSION     XM_032618391.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2485
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             644..2236
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X1"
                     /protein_id="XP_032474282.1"
                     /db_xref="GeneID:116746741"
                     /translation="MESQESVTFKDVAVDFTQEEWALLDTSQRKLFRDVMLENISHLV
                     SVGNQLYKLDVISHLEQGEQLSREELGFLQGQSPVISGREDDLRKQEMISMQHIYKKD
                     TSVISAMQRSHSQEDLLECNDFREKFTEILTLTQYVIPQVGKKPFISQDFGKAISYLS
                     SFDIHKQIHARSKSYECHQRTNAFIQSSALRQHNNTQTGEKTFECHVCRKAFSKSSNL
                     RRHEMIHTGVKPHGCHLCGKCFTHCSDLRKHERIHTGEKLYGCHLCGKAFSKSYNLRR
                     HEMIHTREKPNECHLCGKAFTHCSDLRKHERTHFGEKPYGCHLCGKTFSKTSYLRQHE
                     RTHNGEKPYECHLCGKAFTHCSHLRKHERTHTGEKPYECHLCGKAFTESSVLRRHERT
                     HTGEKPYECHLCWKAFTDSSVLKRHERTHTGEKPYECHLCGKAFNHSSVLRRHERTHT
                     GEKPYECNICGKAFNRNYNFRLHKRIHTGEKPHKCYLCGKAFSKYFNLRQHERTHAVK
                     VVNVEDSPPIASKYKHYCGLPQ"
     misc_feature    662..832
                     /gene="ZNF596"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    1004..1066
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1004..1006,1013..1015,1052..1054,1064..1066)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1088..1150
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1172..1234
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1172..1174,1181..1183,1220..1222,1232..1234)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1256..1318
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1256..1258,1265..1267,1304..1306,1316..1318)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1340..1402
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1340..1342,1349..1351,1388..1390,1400..1402)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1424..1486
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1508..1570
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1508..1510,1517..1519,1556..1558,1568..1570)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1580..2044
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1592..1654
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1592..1594,1601..1603,1640..1642,1652..1654)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1676..1738
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1676..1678,1685..1687,1724..1726,1736..1738)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1691..1693,1697..1699,1703..1705,1709..1714,
                     1721..1726,1733..1735,1775..1777,1781..1783,1793..1798,
                     1805..1810,1817..1819,1859..1861,1865..1867,1871..1873,
                     1877..1882,1889..1894,1901..1903)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1760..1822
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1844..1906
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1928..1990
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2012..2074
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2048..2125
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    2096..2158
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 ttaaagaatg cagctgattc ccgccttgtg ctgacaccca agagggtgca gagattgagt
       61 accatgcagc aatagcaaag aatggaccat caacccacgc aaaggcatgg atgaatttta
      121 cgtatgcatt gccaagtgaa agaacccact ctgaagagcc tacacagtgc gaccaattta
      181 cacaacattc tggaaaaggc aaaactacac agatgtcagt gatggacacc aggactctgc
      241 atgtttgaca agtgcaccag ggatccttat gagtgaaact tgtgaaagca tggctgacaa
      301 gataaggacc agttcttaac atggctcaaa tctcatcagg gtttatctaa agaggcattt
      361 cttgatacat ttatcttgat tgggacccaa gttaatcaga tttgtccttt ggattacaac
      421 actgatgagg ttgccaactg cattaaaaga gagttcacca tcaaaatgat gcattttcta
      481 gaaagagaaa gaagccctga actctggaat gttgtgtcag catcctcgat aaatatttgg
      541 tttcactgga ttttccatct gtttgggttc tgccttgccg cctgttgctt ggactgtgtg
      601 taagtgaaaa cccagaagtc agctggcagc tgagctagtt acaatggaat cacaggaatc
      661 agtgaccttc aaggatgtag ctgtagactt cacccaggaa gagtgggccc tactggacac
      721 atcccagagg aaactattca gagatgtgat gctagagaac atcagtcatc tggtctcagt
      781 tggcaatcag ctctacaaat tagatgtgat ttcccatttg gagcaaggag agcaactttc
      841 aagagaagag ttaggttttc tgcaaggcca gagtccagtc atttcaggta gagaagatga
      901 tctgagaaaa caggaaatga tatccatgca acatatctac aagaaagaca catctgtaat
      961 cagtgcaatg cagagatctc acagtcaaga ggatcttttg gaatgcaatg atttcagaga
     1021 aaaatttact gaaatcttaa cattgactca atatgtgata cctcaagtgg gaaagaaacc
     1081 ctttatcagc caagattttg gaaaagccat cagttacttg tcatcctttg acatacataa
     1141 gcaaattcat gctagaagta aatcatacga atgtcatcaa cgtacaaatg cctttattca
     1201 aagttctgcc cttaggcagc acaataatac tcaaactgga gagaaaacat ttgaatgtca
     1261 tgtatgtagg aaagccttca gtaaaagttc taaccttaga cgacatgaga tgattcatac
     1321 cggagtgaaa ccacatggat gtcatctgtg tgggaaatgc tttactcatt gttctgacct
     1381 tagaaaacat gaaagaattc acactggaga gaaattatat ggatgtcatc tgtgtgggaa
     1441 agccttcagt aaaagttata accttaggcg acatgagatg attcacacta gagagaaacc
     1501 aaatgaatgt catctgtgtg ggaaagcctt cactcattgt tctgacctta gaaaacatga
     1561 gagaactcac tttggagaga aaccatatgg atgccatcta tgtgggaaga cattcagtaa
     1621 aacttcttac cttagacaac atgagagaac tcacaatgga gagaaaccat atgaatgtca
     1681 tctatgtggg aaggccttca ctcattgttc tcaccttaga aaacatgaga gaactcatac
     1741 tggagagaaa ccatatgaat gtcatctatg tggaaaagcc ttcactgagt cttctgtcct
     1801 tagacgacat gagagaactc acactggaga gaaaccatat gaatgtcatc tgtgttggaa
     1861 agccttcact gattcctctg tccttaagcg acatgagaga actcacactg gagaaaaacc
     1921 atatgaatgt cacttatgtg ggaaagcctt caatcactct tctgtcctta gaagacatga
     1981 aagaactcac actggtgaga agccatatga atgcaatata tgtggtaaag ccttcaatag
     2041 aaattataac tttagattgc ataagagaat tcacactgga gagaaaccgc ataaatgtta
     2101 tctatgtggg aaagccttca gtaaatattt taaccttaga caacatgaga gaactcatgc
     2161 tgtaaaggta gtaaatgtgg aagattcacc acccatagct tcaaagtata aacactattg
     2221 tggactccca cagtgaagaa atactatgtt tatattcagt gtataagagc ctttattcgt
     2281 tcttattact ccactcaaag ttaatacaaa gtggagagaa tccatatgta tgttacctat
     2341 gtaacaaaac atttagcagt ggactcaggt gggagaactg aaactgcaaa tggaatgaat
     2401 gtgggagaat cttcatcctc agctgtaact gttaaactaa atggataaat cacatgtcag
     2461 agaaattcta tgtctgtaat cagtg
//
LOCUS       XM_032618392            2855 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X2, mRNA.
ACCESSION   XM_032618392
VERSION     XM_032618392.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2855
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             1014..2606
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X1"
                     /protein_id="XP_032474283.1"
                     /db_xref="GeneID:116746741"
                     /translation="MESQESVTFKDVAVDFTQEEWALLDTSQRKLFRDVMLENISHLV
                     SVGNQLYKLDVISHLEQGEQLSREELGFLQGQSPVISGREDDLRKQEMISMQHIYKKD
                     TSVISAMQRSHSQEDLLECNDFREKFTEILTLTQYVIPQVGKKPFISQDFGKAISYLS
                     SFDIHKQIHARSKSYECHQRTNAFIQSSALRQHNNTQTGEKTFECHVCRKAFSKSSNL
                     RRHEMIHTGVKPHGCHLCGKCFTHCSDLRKHERIHTGEKLYGCHLCGKAFSKSYNLRR
                     HEMIHTREKPNECHLCGKAFTHCSDLRKHERTHFGEKPYGCHLCGKTFSKTSYLRQHE
                     RTHNGEKPYECHLCGKAFTHCSHLRKHERTHTGEKPYECHLCGKAFTESSVLRRHERT
                     HTGEKPYECHLCWKAFTDSSVLKRHERTHTGEKPYECHLCGKAFNHSSVLRRHERTHT
                     GEKPYECNICGKAFNRNYNFRLHKRIHTGEKPHKCYLCGKAFSKYFNLRQHERTHAVK
                     VVNVEDSPPIASKYKHYCGLPQ"
     misc_feature    1032..1202
                     /gene="ZNF596"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    1374..1436
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1374..1376,1383..1385,1422..1424,1434..1436)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1458..1520
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1542..1604
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1542..1544,1551..1553,1590..1592,1602..1604)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1626..1688
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1626..1628,1635..1637,1674..1676,1686..1688)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1710..1772
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1710..1712,1719..1721,1758..1760,1770..1772)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1794..1856
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1878..1940
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1878..1880,1887..1889,1926..1928,1938..1940)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1950..2414
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1962..2024
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1962..1964,1971..1973,2010..2012,2022..2024)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2046..2108
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2046..2048,2055..2057,2094..2096,2106..2108)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2061..2063,2067..2069,2073..2075,2079..2084,
                     2091..2096,2103..2105,2145..2147,2151..2153,2163..2168,
                     2175..2180,2187..2189,2229..2231,2235..2237,2241..2243,
                     2247..2252,2259..2264,2271..2273)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2130..2192
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2214..2276
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2298..2360
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2382..2444
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2418..2495
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    2466..2528
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 ggtgagaatg gtaagccttg ccactatgca gtccagacca ccccatgcct gtgaggccag
       61 taatggttac tctcccctgt tcacatctct tcctgccccc aaacacacac acatagtaca
      121 aaggcagctg gtagggaaag accaagagtt tttaaactaa gcacagagca gttatttctc
      181 caatgaggag atgacacttg gctctgggaa aggggctgga ggagaaaggg caatgcagtt
      241 tggatgttaa ggaatggaag agagtctggg aggctcagga acaggagaaa aggagacctc
      301 tgcccatcct tacttgggga tcctgtgctc agcaggtact agaagacact gtgaggatgg
      361 tgacttgaaa ggtagggtca cactaactca cattcccata tctgccatgt gatgtgtggg
      421 ctttacaggg tagaagggtg tatggagtaa agggcagaga aacttagctg ttggtctcca
      481 tgtaggagtt tatcgtccct gctccctgat agttcagcag acagcagagg actatttttt
      541 ccaaatgttg aatttctccc tatatatgtg gttgtggcca ggaaggggat aagttatttg
      601 aagacctgaa tggcacattc tcaacactca ggagtgacat cttgcctgag agagacactc
      661 ggaggaggaa gaagatgagg agtcaggaat aaatctttat ctggaaaagg gtttatctaa
      721 agaggcattt cttgatacat ttatcttgat tgggacccaa gttaatcaga tttgtccttt
      781 ggattacaac actgatgagg ttgccaactg cattaaaaga gagttcacca tcaaaatgat
      841 gcattttcta gaaagagaaa gaagccctga actctggaat gttgtgtcag catcctcgat
      901 aaatatttgg tttcactgga ttttccatct gtttgggttc tgccttgccg cctgttgctt
      961 ggactgtgtg taagtgaaaa cccagaagtc agctggcagc tgagctagtt acaatggaat
     1021 cacaggaatc agtgaccttc aaggatgtag ctgtagactt cacccaggaa gagtgggccc
     1081 tactggacac atcccagagg aaactattca gagatgtgat gctagagaac atcagtcatc
     1141 tggtctcagt tggcaatcag ctctacaaat tagatgtgat ttcccatttg gagcaaggag
     1201 agcaactttc aagagaagag ttaggttttc tgcaaggcca gagtccagtc atttcaggta
     1261 gagaagatga tctgagaaaa caggaaatga tatccatgca acatatctac aagaaagaca
     1321 catctgtaat cagtgcaatg cagagatctc acagtcaaga ggatcttttg gaatgcaatg
     1381 atttcagaga aaaatttact gaaatcttaa cattgactca atatgtgata cctcaagtgg
     1441 gaaagaaacc ctttatcagc caagattttg gaaaagccat cagttacttg tcatcctttg
     1501 acatacataa gcaaattcat gctagaagta aatcatacga atgtcatcaa cgtacaaatg
     1561 cctttattca aagttctgcc cttaggcagc acaataatac tcaaactgga gagaaaacat
     1621 ttgaatgtca tgtatgtagg aaagccttca gtaaaagttc taaccttaga cgacatgaga
     1681 tgattcatac cggagtgaaa ccacatggat gtcatctgtg tgggaaatgc tttactcatt
     1741 gttctgacct tagaaaacat gaaagaattc acactggaga gaaattatat ggatgtcatc
     1801 tgtgtgggaa agccttcagt aaaagttata accttaggcg acatgagatg attcacacta
     1861 gagagaaacc aaatgaatgt catctgtgtg ggaaagcctt cactcattgt tctgacctta
     1921 gaaaacatga gagaactcac tttggagaga aaccatatgg atgccatcta tgtgggaaga
     1981 cattcagtaa aacttcttac cttagacaac atgagagaac tcacaatgga gagaaaccat
     2041 atgaatgtca tctatgtggg aaggccttca ctcattgttc tcaccttaga aaacatgaga
     2101 gaactcatac tggagagaaa ccatatgaat gtcatctatg tggaaaagcc ttcactgagt
     2161 cttctgtcct tagacgacat gagagaactc acactggaga gaaaccatat gaatgtcatc
     2221 tgtgttggaa agccttcact gattcctctg tccttaagcg acatgagaga actcacactg
     2281 gagaaaaacc atatgaatgt cacttatgtg ggaaagcctt caatcactct tctgtcctta
     2341 gaagacatga aagaactcac actggtgaga agccatatga atgcaatata tgtggtaaag
     2401 ccttcaatag aaattataac tttagattgc ataagagaat tcacactgga gagaaaccgc
     2461 ataaatgtta tctatgtggg aaagccttca gtaaatattt taaccttaga caacatgaga
     2521 gaactcatgc tgtaaaggta gtaaatgtgg aagattcacc acccatagct tcaaagtata
     2581 aacactattg tggactccca cagtgaagaa atactatgtt tatattcagt gtataagagc
     2641 ctttattcgt tcttattact ccactcaaag ttaatacaaa gtggagagaa tccatatgta
     2701 tgttacctat gtaacaaaac atttagcagt ggactcaggt gggagaactg aaactgcaaa
     2761 tggaatgaat gtgggagaat cttcatcctc agctgtaact gttaaactaa atggataaat
     2821 cacatgtcag agaaattcta tgtctgtaat cagtg
//
LOCUS       XM_032618393            1948 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X3, mRNA.
ACCESSION   XM_032618393
VERSION     XM_032618393.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1948
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             107..1699
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X1"
                     /protein_id="XP_032474284.1"
                     /db_xref="GeneID:116746741"
                     /translation="MESQESVTFKDVAVDFTQEEWALLDTSQRKLFRDVMLENISHLV
                     SVGNQLYKLDVISHLEQGEQLSREELGFLQGQSPVISGREDDLRKQEMISMQHIYKKD
                     TSVISAMQRSHSQEDLLECNDFREKFTEILTLTQYVIPQVGKKPFISQDFGKAISYLS
                     SFDIHKQIHARSKSYECHQRTNAFIQSSALRQHNNTQTGEKTFECHVCRKAFSKSSNL
                     RRHEMIHTGVKPHGCHLCGKCFTHCSDLRKHERIHTGEKLYGCHLCGKAFSKSYNLRR
                     HEMIHTREKPNECHLCGKAFTHCSDLRKHERTHFGEKPYGCHLCGKTFSKTSYLRQHE
                     RTHNGEKPYECHLCGKAFTHCSHLRKHERTHTGEKPYECHLCGKAFTESSVLRRHERT
                     HTGEKPYECHLCWKAFTDSSVLKRHERTHTGEKPYECHLCGKAFNHSSVLRRHERTHT
                     GEKPYECNICGKAFNRNYNFRLHKRIHTGEKPHKCYLCGKAFSKYFNLRQHERTHAVK
                     VVNVEDSPPIASKYKHYCGLPQ"
     misc_feature    125..295
                     /gene="ZNF596"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    467..529
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(467..469,476..478,515..517,527..529)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    551..613
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    635..697
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(635..637,644..646,683..685,695..697)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    719..781
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(719..721,728..730,767..769,779..781)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    803..865
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(803..805,812..814,851..853,863..865)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    887..949
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    971..1033
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(971..973,980..982,1019..1021,1031..1033)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1043..1507
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1055..1117
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1055..1057,1064..1066,1103..1105,1115..1117)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1139..1201
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1139..1141,1148..1150,1187..1189,1199..1201)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1154..1156,1160..1162,1166..1168,1172..1177,
                     1184..1189,1196..1198,1238..1240,1244..1246,1256..1261,
                     1268..1273,1280..1282,1322..1324,1328..1330,1334..1336,
                     1340..1345,1352..1357,1364..1366)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1223..1285
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1307..1369
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1391..1453
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1475..1537
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1511..1588
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1559..1621
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gcggaagcgg atttcgggag cgaaggtccc gtcggccttg ccgcctgttg cttggactgt
       61 gtgtaagtga aaacccagaa gtcagctggc agctgagcta gttacaatgg aatcacagga
      121 atcagtgacc ttcaaggatg tagctgtaga cttcacccag gaagagtggg ccctactgga
      181 cacatcccag aggaaactat tcagagatgt gatgctagag aacatcagtc atctggtctc
      241 agttggcaat cagctctaca aattagatgt gatttcccat ttggagcaag gagagcaact
      301 ttcaagagaa gagttaggtt ttctgcaagg ccagagtcca gtcatttcag gtagagaaga
      361 tgatctgaga aaacaggaaa tgatatccat gcaacatatc tacaagaaag acacatctgt
      421 aatcagtgca atgcagagat ctcacagtca agaggatctt ttggaatgca atgatttcag
      481 agaaaaattt actgaaatct taacattgac tcaatatgtg atacctcaag tgggaaagaa
      541 accctttatc agccaagatt ttggaaaagc catcagttac ttgtcatcct ttgacataca
      601 taagcaaatt catgctagaa gtaaatcata cgaatgtcat caacgtacaa atgcctttat
      661 tcaaagttct gcccttaggc agcacaataa tactcaaact ggagagaaaa catttgaatg
      721 tcatgtatgt aggaaagcct tcagtaaaag ttctaacctt agacgacatg agatgattca
      781 taccggagtg aaaccacatg gatgtcatct gtgtgggaaa tgctttactc attgttctga
      841 ccttagaaaa catgaaagaa ttcacactgg agagaaatta tatggatgtc atctgtgtgg
      901 gaaagccttc agtaaaagtt ataaccttag gcgacatgag atgattcaca ctagagagaa
      961 accaaatgaa tgtcatctgt gtgggaaagc cttcactcat tgttctgacc ttagaaaaca
     1021 tgagagaact cactttggag agaaaccata tggatgccat ctatgtggga agacattcag
     1081 taaaacttct taccttagac aacatgagag aactcacaat ggagagaaac catatgaatg
     1141 tcatctatgt gggaaggcct tcactcattg ttctcacctt agaaaacatg agagaactca
     1201 tactggagag aaaccatatg aatgtcatct atgtggaaaa gccttcactg agtcttctgt
     1261 ccttagacga catgagagaa ctcacactgg agagaaacca tatgaatgtc atctgtgttg
     1321 gaaagccttc actgattcct ctgtccttaa gcgacatgag agaactcaca ctggagaaaa
     1381 accatatgaa tgtcacttat gtgggaaagc cttcaatcac tcttctgtcc ttagaagaca
     1441 tgaaagaact cacactggtg agaagccata tgaatgcaat atatgtggta aagccttcaa
     1501 tagaaattat aactttagat tgcataagag aattcacact ggagagaaac cgcataaatg
     1561 ttatctatgt gggaaagcct tcagtaaata ttttaacctt agacaacatg agagaactca
     1621 tgctgtaaag gtagtaaatg tggaagattc accacccata gcttcaaagt ataaacacta
     1681 ttgtggactc ccacagtgaa gaaatactat gtttatattc agtgtataag agcctttatt
     1741 cgttcttatt actccactca aagttaatac aaagtggaga gaatccatat gtatgttacc
     1801 tatgtaacaa aacatttagc agtggactca ggtgggagaa ctgaaactgc aaatggaatg
     1861 aatgtgggag aatcttcatc ctcagctgta actgttaaac taaatggata aatcacatgt
     1921 cagagaaatt ctatgtctgt aatcagtg
//
LOCUS       XM_032618394            2261 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X4, mRNA.
ACCESSION   XM_032618394
VERSION     XM_032618394.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2261
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             341..1930
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X2"
                     /protein_id="XP_032474285.1"
                     /db_xref="GeneID:116746741"
                     /translation="MESQESVTFKDVAVDFTQEEWALLDTSQRKLFRDVMLENISHLV
                     SVGNQLYKLDVISHLEQGEQLSREELGFLQGQSPVISGREDDLRKQEMISMQHIYKKD
                     TSVISAMRSHSQEDLLECNDFREKFTEILTLTQYVIPQVGKKPFISQDFGKAISYLSS
                     FDIHKQIHARSKSYECHQRTNAFIQSSALRQHNNTQTGEKTFECHVCRKAFSKSSNLR
                     RHEMIHTGVKPHGCHLCGKCFTHCSDLRKHERIHTGEKLYGCHLCGKAFSKSYNLRRH
                     EMIHTREKPNECHLCGKAFTHCSDLRKHERTHFGEKPYGCHLCGKTFSKTSYLRQHER
                     THNGEKPYECHLCGKAFTHCSHLRKHERTHTGEKPYECHLCGKAFTESSVLRRHERTH
                     TGEKPYECHLCWKAFTDSSVLKRHERTHTGEKPYECHLCGKAFNHSSVLRRHERTHTG
                     EKPYECNICGKAFNRNYNFRLHKRIHTGEKPHKCYLCGKAFSKYFNLRQHERTHAVKV
                     VNVEDSPPIASKYKHYCGLPQ"
     misc_feature    359..529
                     /gene="ZNF596"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    698..760
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(698..700,707..709,746..748,758..760)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    782..844
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    866..928
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(866..868,875..877,914..916,926..928)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    950..1012
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(950..952,959..961,998..1000,1010..1012)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1034..1096
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1034..1036,1043..1045,1082..1084,1094..1096)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1118..1180
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1202..1264
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1202..1204,1211..1213,1250..1252,1262..1264)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1274..1738
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1286..1348
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1286..1288,1295..1297,1334..1336,1346..1348)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1370..1432
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1370..1372,1379..1381,1418..1420,1430..1432)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1385..1387,1391..1393,1397..1399,1403..1408,
                     1415..1420,1427..1429,1469..1471,1475..1477,1487..1492,
                     1499..1504,1511..1513,1553..1555,1559..1561,1565..1567,
                     1571..1576,1583..1588,1595..1597)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1454..1516
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1538..1600
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1622..1684
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1706..1768
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1742..1819
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1790..1852
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cgcggaagcg gatttcggga gcgaaggtcc cgtcggggtt tatctaaaga ggcatttctt
       61 gatacattta tcttgattgg gacccaagtt aatcagattt gtcctttgga ttacaacact
      121 gatgaggttg ccaactgcat taaaagagag ttcaccatca aaatgatgca ttttctagaa
      181 agagaaagaa gccctgaact ctggaatgtt gtgtcagcat cctcgataaa tatttggttt
      241 cactggattt tccatctgtt tgggttctgc cttgccgcct gttgcttgga ctgtgtgtaa
      301 gtgaaaaccc agaagtcagc tggcagctga gctagttaca atggaatcac aggaatcagt
      361 gaccttcaag gatgtagctg tagacttcac ccaggaagag tgggccctac tggacacatc
      421 ccagaggaaa ctattcagag atgtgatgct agagaacatc agtcatctgg tctcagttgg
      481 caatcagctc tacaaattag atgtgatttc ccatttggag caaggagagc aactttcaag
      541 agaagagtta ggttttctgc aaggccagag tccagtcatt tcaggtagag aagatgatct
      601 gagaaaacag gaaatgatat ccatgcaaca tatctacaag aaagacacat ctgtaatcag
      661 tgcaatgaga tctcacagtc aagaggatct tttggaatgc aatgatttca gagaaaaatt
      721 tactgaaatc ttaacattga ctcaatatgt gatacctcaa gtgggaaaga aaccctttat
      781 cagccaagat tttggaaaag ccatcagtta cttgtcatcc tttgacatac ataagcaaat
      841 tcatgctaga agtaaatcat acgaatgtca tcaacgtaca aatgccttta ttcaaagttc
      901 tgcccttagg cagcacaata atactcaaac tggagagaaa acatttgaat gtcatgtatg
      961 taggaaagcc ttcagtaaaa gttctaacct tagacgacat gagatgattc ataccggagt
     1021 gaaaccacat ggatgtcatc tgtgtgggaa atgctttact cattgttctg accttagaaa
     1081 acatgaaaga attcacactg gagagaaatt atatggatgt catctgtgtg ggaaagcctt
     1141 cagtaaaagt tataacctta ggcgacatga gatgattcac actagagaga aaccaaatga
     1201 atgtcatctg tgtgggaaag ccttcactca ttgttctgac cttagaaaac atgagagaac
     1261 tcactttgga gagaaaccat atggatgcca tctatgtggg aagacattca gtaaaacttc
     1321 ttaccttaga caacatgaga gaactcacaa tggagagaaa ccatatgaat gtcatctatg
     1381 tgggaaggcc ttcactcatt gttctcacct tagaaaacat gagagaactc atactggaga
     1441 gaaaccatat gaatgtcatc tatgtggaaa agccttcact gagtcttctg tccttagacg
     1501 acatgagaga actcacactg gagagaaacc atatgaatgt catctgtgtt ggaaagcctt
     1561 cactgattcc tctgtcctta agcgacatga gagaactcac actggagaaa aaccatatga
     1621 atgtcactta tgtgggaaag ccttcaatca ctcttctgtc cttagaagac atgaaagaac
     1681 tcacactggt gagaagccat atgaatgcaa tatatgtggt aaagccttca atagaaatta
     1741 taactttaga ttgcataaga gaattcacac tggagagaaa ccgcataaat gttatctatg
     1801 tgggaaagcc ttcagtaaat attttaacct tagacaacat gagagaactc atgctgtaaa
     1861 ggtagtaaat gtggaagatt caccacccat agcttcaaag tataaacact attgtggact
     1921 cccacagtga agaaatacta tgtttatatt cagtgtataa gagcctttat tcgttcttat
     1981 tactccactc aaagttaata caaagtggag agaatccata tgtatgttac ctatgtaaca
     2041 aaacatttag cagtggactc aggtgggaga actgaaactg caaatggaat gaatgtggga
     2101 gaatcttcat cctcagctgt aactgttaaa ctaaatggat aaatcacatg tcagagaaat
     2161 tctatgtctg taatcagtgt ggaaatgcct tgagttataa attatccttt aaataaataa
     2221 actgcacaag agagaaattc tagacctgta atcactgtgc a
//
LOCUS       XM_032618395            2260 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X5, mRNA.
ACCESSION   XM_032618395
VERSION     XM_032618395.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2260
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2260
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             346..1929
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X3"
                     /protein_id="XP_032474286.1"
                     /db_xref="GeneID:116746741"
                     /translation="MESQESVTFKDVAVDFTQEEWALLDTSQRKLFRDVMLENISHLV
                     SVGNQLYKLDVISHLEQGEQLSREELGFLQGQSPGREDDLRKQEMISMQHIYKKDTSV
                     ISAMQRSHSQEDLLECNDFREKFTEILTLTQYVIPQVGKKPFISQDFGKAISYLSSFD
                     IHKQIHARSKSYECHQRTNAFIQSSALRQHNNTQTGEKTFECHVCRKAFSKSSNLRRH
                     EMIHTGVKPHGCHLCGKCFTHCSDLRKHERIHTGEKLYGCHLCGKAFSKSYNLRRHEM
                     IHTREKPNECHLCGKAFTHCSDLRKHERTHFGEKPYGCHLCGKTFSKTSYLRQHERTH
                     NGEKPYECHLCGKAFTHCSHLRKHERTHTGEKPYECHLCGKAFTESSVLRRHERTHTG
                     EKPYECHLCWKAFTDSSVLKRHERTHTGEKPYECHLCGKAFNHSSVLRRHERTHTGEK
                     PYECNICGKAFNRNYNFRLHKRIHTGEKPHKCYLCGKAFSKYFNLRQHERTHAVKVVN
                     VEDSPPIASKYKHYCGLPQ"
     misc_feature    364..534
                     /gene="ZNF596"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    697..759
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(697..699,706..708,745..747,757..759)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    781..843
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    865..927
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(865..867,874..876,913..915,925..927)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    949..1011
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(949..951,958..960,997..999,1009..1011)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1033..1095
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1033..1035,1042..1044,1081..1083,1093..1095)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1117..1179
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1201..1263
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1201..1203,1210..1212,1249..1251,1261..1263)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1273..1737
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1285..1347
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1285..1287,1294..1296,1333..1335,1345..1347)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1369..1431
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1369..1371,1378..1380,1417..1419,1429..1431)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1384..1386,1390..1392,1396..1398,1402..1407,
                     1414..1419,1426..1428,1468..1470,1474..1476,1486..1491,
                     1498..1503,1510..1512,1552..1554,1558..1560,1564..1566,
                     1570..1575,1582..1587,1594..1596)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1453..1515
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1537..1599
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1621..1683
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1705..1767
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1741..1818
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1789..1851
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gccgacgcgg aagcggattt cgggagcgaa ggtcccgtcg gggtttatct aaagaggcat
       61 ttcttgatac atttatcttg attgggaccc aagttaatca gatttgtcct ttggattaca
      121 acactgatga ggttgccaac tgcattaaaa gagagttcac catcaaaatg atgcattttc
      181 tagaaagaga aagaagccct gaactctgga atgttgtgtc agcatcctcg ataaatattt
      241 ggtttcactg gattttccat ctgtttgggt tctgccttgc cgcctgttgc ttggactgtg
      301 tgtaagtgaa aacccagaag tcagctggca gctgagctag ttacaatgga atcacaggaa
      361 tcagtgacct tcaaggatgt agctgtagac ttcacccagg aagagtgggc cctactggac
      421 acatcccaga ggaaactatt cagagatgtg atgctagaga acatcagtca tctggtctca
      481 gttggcaatc agctctacaa attagatgtg atttcccatt tggagcaagg agagcaactt
      541 tcaagagaag agttaggttt tctgcaaggc cagagtccag gtagagaaga tgatctgaga
      601 aaacaggaaa tgatatccat gcaacatatc tacaagaaag acacatctgt aatcagtgca
      661 atgcagagat ctcacagtca agaggatctt ttggaatgca atgatttcag agaaaaattt
      721 actgaaatct taacattgac tcaatatgtg atacctcaag tgggaaagaa accctttatc
      781 agccaagatt ttggaaaagc catcagttac ttgtcatcct ttgacataca taagcaaatt
      841 catgctagaa gtaaatcata cgaatgtcat caacgtacaa atgcctttat tcaaagttct
      901 gcccttaggc agcacaataa tactcaaact ggagagaaaa catttgaatg tcatgtatgt
      961 aggaaagcct tcagtaaaag ttctaacctt agacgacatg agatgattca taccggagtg
     1021 aaaccacatg gatgtcatct gtgtgggaaa tgctttactc attgttctga ccttagaaaa
     1081 catgaaagaa ttcacactgg agagaaatta tatggatgtc atctgtgtgg gaaagccttc
     1141 agtaaaagtt ataaccttag gcgacatgag atgattcaca ctagagagaa accaaatgaa
     1201 tgtcatctgt gtgggaaagc cttcactcat tgttctgacc ttagaaaaca tgagagaact
     1261 cactttggag agaaaccata tggatgccat ctatgtggga agacattcag taaaacttct
     1321 taccttagac aacatgagag aactcacaat ggagagaaac catatgaatg tcatctatgt
     1381 gggaaggcct tcactcattg ttctcacctt agaaaacatg agagaactca tactggagag
     1441 aaaccatatg aatgtcatct atgtggaaaa gccttcactg agtcttctgt ccttagacga
     1501 catgagagaa ctcacactgg agagaaacca tatgaatgtc atctgtgttg gaaagccttc
     1561 actgattcct ctgtccttaa gcgacatgag agaactcaca ctggagaaaa accatatgaa
     1621 tgtcacttat gtgggaaagc cttcaatcac tcttctgtcc ttagaagaca tgaaagaact
     1681 cacactggtg agaagccata tgaatgcaat atatgtggta aagccttcaa tagaaattat
     1741 aactttagat tgcataagag aattcacact ggagagaaac cgcataaatg ttatctatgt
     1801 gggaaagcct tcagtaaata ttttaacctt agacaacatg agagaactca tgctgtaaag
     1861 gtagtaaatg tggaagattc accacccata gcttcaaagt ataaacacta ttgtggactc
     1921 ccacagtgaa gaaatactat gtttatattc agtgtataag agcctttatt cgttcttatt
     1981 actccactca aagttaatac aaagtggaga gaatccatat gtatgttacc tatgtaacaa
     2041 aacatttagc agtggactca ggtgggagaa ctgaaactgc aaatggaatg aatgtgggag
     2101 aatcttcatc ctcagctgta actgttaaac taaatggata aatcacatgt cagagaaatt
     2161 ctatgtctgt aatcagtgtg gaaatgcctt gagttataaa ttatccttta aataaataaa
     2221 ctgcacaaga gagaaattct agacctgtaa tcactgtgca
//
LOCUS       XM_032618396            2252 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X6, mRNA.
ACCESSION   XM_032618396
VERSION     XM_032618396.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2252
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             341..1921
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X4"
                     /protein_id="XP_032474287.1"
                     /db_xref="GeneID:116746741"
                     /translation="MESQESVTFKDVAVDFTQEEWALLDTSQRKLFRDVMLENISHLV
                     SVGNQLYKLDVISHLEQGEQLSREELGFLQGQSPGREDDLRKQEMISMQHIYKKDTSV
                     ISAMRSHSQEDLLECNDFREKFTEILTLTQYVIPQVGKKPFISQDFGKAISYLSSFDI
                     HKQIHARSKSYECHQRTNAFIQSSALRQHNNTQTGEKTFECHVCRKAFSKSSNLRRHE
                     MIHTGVKPHGCHLCGKCFTHCSDLRKHERIHTGEKLYGCHLCGKAFSKSYNLRRHEMI
                     HTREKPNECHLCGKAFTHCSDLRKHERTHFGEKPYGCHLCGKTFSKTSYLRQHERTHN
                     GEKPYECHLCGKAFTHCSHLRKHERTHTGEKPYECHLCGKAFTESSVLRRHERTHTGE
                     KPYECHLCWKAFTDSSVLKRHERTHTGEKPYECHLCGKAFNHSSVLRRHERTHTGEKP
                     YECNICGKAFNRNYNFRLHKRIHTGEKPHKCYLCGKAFSKYFNLRQHERTHAVKVVNV
                     EDSPPIASKYKHYCGLPQ"
     misc_feature    359..529
                     /gene="ZNF596"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    689..751
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(689..691,698..700,737..739,749..751)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    773..835
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    857..919
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(857..859,866..868,905..907,917..919)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    941..1003
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(941..943,950..952,989..991,1001..1003)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1025..1087
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1025..1027,1034..1036,1073..1075,1085..1087)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1109..1171
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1193..1255
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1193..1195,1202..1204,1241..1243,1253..1255)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1265..1729
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1277..1339
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1277..1279,1286..1288,1325..1327,1337..1339)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1361..1423
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1361..1363,1370..1372,1409..1411,1421..1423)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1376..1378,1382..1384,1388..1390,1394..1399,
                     1406..1411,1418..1420,1460..1462,1466..1468,1478..1483,
                     1490..1495,1502..1504,1544..1546,1550..1552,1556..1558,
                     1562..1567,1574..1579,1586..1588)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1445..1507
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1529..1591
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1613..1675
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1697..1759
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1733..1810
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1781..1843
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cgcggaagcg gatttcggga gcgaaggtcc cgtcggggtt tatctaaaga ggcatttctt
       61 gatacattta tcttgattgg gacccaagtt aatcagattt gtcctttgga ttacaacact
      121 gatgaggttg ccaactgcat taaaagagag ttcaccatca aaatgatgca ttttctagaa
      181 agagaaagaa gccctgaact ctggaatgtt gtgtcagcat cctcgataaa tatttggttt
      241 cactggattt tccatctgtt tgggttctgc cttgccgcct gttgcttgga ctgtgtgtaa
      301 gtgaaaaccc agaagtcagc tggcagctga gctagttaca atggaatcac aggaatcagt
      361 gaccttcaag gatgtagctg tagacttcac ccaggaagag tgggccctac tggacacatc
      421 ccagaggaaa ctattcagag atgtgatgct agagaacatc agtcatctgg tctcagttgg
      481 caatcagctc tacaaattag atgtgatttc ccatttggag caaggagagc aactttcaag
      541 agaagagtta ggttttctgc aaggccagag tccaggtaga gaagatgatc tgagaaaaca
      601 ggaaatgata tccatgcaac atatctacaa gaaagacaca tctgtaatca gtgcaatgag
      661 atctcacagt caagaggatc ttttggaatg caatgatttc agagaaaaat ttactgaaat
      721 cttaacattg actcaatatg tgatacctca agtgggaaag aaacccttta tcagccaaga
      781 ttttggaaaa gccatcagtt acttgtcatc ctttgacata cataagcaaa ttcatgctag
      841 aagtaaatca tacgaatgtc atcaacgtac aaatgccttt attcaaagtt ctgcccttag
      901 gcagcacaat aatactcaaa ctggagagaa aacatttgaa tgtcatgtat gtaggaaagc
      961 cttcagtaaa agttctaacc ttagacgaca tgagatgatt cataccggag tgaaaccaca
     1021 tggatgtcat ctgtgtggga aatgctttac tcattgttct gaccttagaa aacatgaaag
     1081 aattcacact ggagagaaat tatatggatg tcatctgtgt gggaaagcct tcagtaaaag
     1141 ttataacctt aggcgacatg agatgattca cactagagag aaaccaaatg aatgtcatct
     1201 gtgtgggaaa gccttcactc attgttctga ccttagaaaa catgagagaa ctcactttgg
     1261 agagaaacca tatggatgcc atctatgtgg gaagacattc agtaaaactt cttaccttag
     1321 acaacatgag agaactcaca atggagagaa accatatgaa tgtcatctat gtgggaaggc
     1381 cttcactcat tgttctcacc ttagaaaaca tgagagaact catactggag agaaaccata
     1441 tgaatgtcat ctatgtggaa aagccttcac tgagtcttct gtccttagac gacatgagag
     1501 aactcacact ggagagaaac catatgaatg tcatctgtgt tggaaagcct tcactgattc
     1561 ctctgtcctt aagcgacatg agagaactca cactggagaa aaaccatatg aatgtcactt
     1621 atgtgggaaa gccttcaatc actcttctgt ccttagaaga catgaaagaa ctcacactgg
     1681 tgagaagcca tatgaatgca atatatgtgg taaagccttc aatagaaatt ataactttag
     1741 attgcataag agaattcaca ctggagagaa accgcataaa tgttatctat gtgggaaagc
     1801 cttcagtaaa tattttaacc ttagacaaca tgagagaact catgctgtaa aggtagtaaa
     1861 tgtggaagat tcaccaccca tagcttcaaa gtataaacac tattgtggac tcccacagtg
     1921 aagaaatact atgtttatat tcagtgtata agagccttta ttcgttctta ttactccact
     1981 caaagttaat acaaagtgga gagaatccat atgtatgtta cctatgtaac aaaacattta
     2041 gcagtggact caggtgggag aactgaaact gcaaatggaa tgaatgtggg agaatcttca
     2101 tcctcagctg taactgttaa actaaatgga taaatcacat gtcagagaaa ttctatgtct
     2161 gtaatcagtg tggaaatgcc ttgagttata aattatcctt taaataaata aactgcacaa
     2221 gagagaaatt ctagacctgt aatcactgtg ca
//
LOCUS       XM_032618397            2443 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X7, mRNA.
ACCESSION   XM_032618397
VERSION     XM_032618397.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2443
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             625..2112
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X5"
                     /protein_id="XP_032474288.1"
                     /db_xref="GeneID:116746741"
                     /translation="MLENISHLVSVGNQLYKLDVISHLEQGEQLSREELGFLQGQSPV
                     ISGREDDLRKQEMISMQHIYKKDTSVISAMQRSHSQEDLLECNDFREKFTEILTLTQY
                     VIPQVGKKPFISQDFGKAISYLSSFDIHKQIHARSKSYECHQRTNAFIQSSALRQHNN
                     TQTGEKTFECHVCRKAFSKSSNLRRHEMIHTGVKPHGCHLCGKCFTHCSDLRKHERIH
                     TGEKLYGCHLCGKAFSKSYNLRRHEMIHTREKPNECHLCGKAFTHCSDLRKHERTHFG
                     EKPYGCHLCGKTFSKTSYLRQHERTHNGEKPYECHLCGKAFTHCSHLRKHERTHTGEK
                     PYECHLCGKAFTESSVLRRHERTHTGEKPYECHLCWKAFTDSSVLKRHERTHTGEKPY
                     ECHLCGKAFNHSSVLRRHERTHTGEKPYECNICGKAFNRNYNFRLHKRIHTGEKPHKC
                     YLCGKAFSKYFNLRQHERTHAVKVVNVEDSPPIASKYKHYCGLPQ"
     misc_feature    <625..708
                     /gene="ZNF596"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    880..942
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(880..882,889..891,928..930,940..942)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    964..1026
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1048..1110
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1048..1050,1057..1059,1096..1098,1108..1110)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1132..1194
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1132..1134,1141..1143,1180..1182,1192..1194)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1216..1278
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1216..1218,1225..1227,1264..1266,1276..1278)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1300..1362
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1384..1446
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1384..1386,1393..1395,1432..1434,1444..1446)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1456..1920
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1468..1530
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1468..1470,1477..1479,1516..1518,1528..1530)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1552..1614
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1552..1554,1561..1563,1600..1602,1612..1614)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1567..1569,1573..1575,1579..1581,1585..1590,
                     1597..1602,1609..1611,1651..1653,1657..1659,1669..1674,
                     1681..1686,1693..1695,1735..1737,1741..1743,1747..1749,
                     1753..1758,1765..1770,1777..1779)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1636..1698
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1720..1782
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1804..1866
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1888..1950
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1924..2001
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1972..2034
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cgcggaagcg gatttcggga gcgaaggtcc cgtcggggtt tatctaaaga ggcatttctt
       61 gatacattta tcttgattgg gacccaagtt aatcagattt gtcctttgga ttacaacact
      121 gatgaggttg ccaactgcat taaaagagag ttcaccatca aaatgatgca ttttctagaa
      181 agagaaagaa gccctgaact ctggaatgtt gtgtcagcat cctcgataaa tatttggttt
      241 cactggattt tccatctgtt tgggttctgc cttgccgcct gttgcttgga ctgtgtgtaa
      301 gtgaaaaccc agaagtcagc tggcagctga gctagttaca atggaatcac aggtaagtag
      361 gaaattactc tttctactgg aattgcatct ctattttcag tatatggaca tatttctcct
      421 acaggcacac atgttctaag cacactcgag agatttttca aggatctgag cttcagttaa
      481 gtttccccag aattctggaa tggtcatgtt ggatcaagga ctcatcaagt ggaatcagtg
      541 accttcaagg atgtagctgt agacttcacc caggaagagt gggccctact ggacacatcc
      601 cagaggaaac tattcagaga tgtgatgcta gagaacatca gtcatctggt ctcagttggc
      661 aatcagctct acaaattaga tgtgatttcc catttggagc aaggagagca actttcaaga
      721 gaagagttag gttttctgca aggccagagt ccagtcattt caggtagaga agatgatctg
      781 agaaaacagg aaatgatatc catgcaacat atctacaaga aagacacatc tgtaatcagt
      841 gcaatgcaga gatctcacag tcaagaggat cttttggaat gcaatgattt cagagaaaaa
      901 tttactgaaa tcttaacatt gactcaatat gtgatacctc aagtgggaaa gaaacccttt
      961 atcagccaag attttggaaa agccatcagt tacttgtcat cctttgacat acataagcaa
     1021 attcatgcta gaagtaaatc atacgaatgt catcaacgta caaatgcctt tattcaaagt
     1081 tctgccctta ggcagcacaa taatactcaa actggagaga aaacatttga atgtcatgta
     1141 tgtaggaaag ccttcagtaa aagttctaac cttagacgac atgagatgat tcataccgga
     1201 gtgaaaccac atggatgtca tctgtgtggg aaatgcttta ctcattgttc tgaccttaga
     1261 aaacatgaaa gaattcacac tggagagaaa ttatatggat gtcatctgtg tgggaaagcc
     1321 ttcagtaaaa gttataacct taggcgacat gagatgattc acactagaga gaaaccaaat
     1381 gaatgtcatc tgtgtgggaa agccttcact cattgttctg accttagaaa acatgagaga
     1441 actcactttg gagagaaacc atatggatgc catctatgtg ggaagacatt cagtaaaact
     1501 tcttacctta gacaacatga gagaactcac aatggagaga aaccatatga atgtcatcta
     1561 tgtgggaagg ccttcactca ttgttctcac cttagaaaac atgagagaac tcatactgga
     1621 gagaaaccat atgaatgtca tctatgtgga aaagccttca ctgagtcttc tgtccttaga
     1681 cgacatgaga gaactcacac tggagagaaa ccatatgaat gtcatctgtg ttggaaagcc
     1741 ttcactgatt cctctgtcct taagcgacat gagagaactc acactggaga aaaaccatat
     1801 gaatgtcact tatgtgggaa agccttcaat cactcttctg tccttagaag acatgaaaga
     1861 actcacactg gtgagaagcc atatgaatgc aatatatgtg gtaaagcctt caatagaaat
     1921 tataacttta gattgcataa gagaattcac actggagaga aaccgcataa atgttatcta
     1981 tgtgggaaag ccttcagtaa atattttaac cttagacaac atgagagaac tcatgctgta
     2041 aaggtagtaa atgtggaaga ttcaccaccc atagcttcaa agtataaaca ctattgtgga
     2101 ctcccacagt gaagaaatac tatgtttata ttcagtgtat aagagccttt attcgttctt
     2161 attactccac tcaaagttaa tacaaagtgg agagaatcca tatgtatgtt acctatgtaa
     2221 caaaacattt agcagtggac tcaggtggga gaactgaaac tgcaaatgga atgaatgtgg
     2281 gagaatcttc atcctcagct gtaactgtta aactaaatgg ataaatcaca tgtcagagaa
     2341 attctatgtc tgtaatcagt gtggaaatgc cttgagttat aaattatcct ttaaataaat
     2401 aaactgcaca agagagaaat tctagacctg taatcactgt gca
//
LOCUS       XM_032618398            2439 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X8, mRNA.
ACCESSION   XM_032618398
VERSION     XM_032618398.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2439
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             621..2108
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X5"
                     /protein_id="XP_032474289.1"
                     /db_xref="GeneID:116746741"
                     /translation="MLENISHLVSVGNQLYKLDVISHLEQGEQLSREELGFLQGQSPV
                     ISGREDDLRKQEMISMQHIYKKDTSVISAMQRSHSQEDLLECNDFREKFTEILTLTQY
                     VIPQVGKKPFISQDFGKAISYLSSFDIHKQIHARSKSYECHQRTNAFIQSSALRQHNN
                     TQTGEKTFECHVCRKAFSKSSNLRRHEMIHTGVKPHGCHLCGKCFTHCSDLRKHERIH
                     TGEKLYGCHLCGKAFSKSYNLRRHEMIHTREKPNECHLCGKAFTHCSDLRKHERTHFG
                     EKPYGCHLCGKTFSKTSYLRQHERTHNGEKPYECHLCGKAFTHCSHLRKHERTHTGEK
                     PYECHLCGKAFTESSVLRRHERTHTGEKPYECHLCWKAFTDSSVLKRHERTHTGEKPY
                     ECHLCGKAFNHSSVLRRHERTHTGEKPYECNICGKAFNRNYNFRLHKRIHTGEKPHKC
                     YLCGKAFSKYFNLRQHERTHAVKVVNVEDSPPIASKYKHYCGLPQ"
     misc_feature    <621..704
                     /gene="ZNF596"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    876..938
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(876..878,885..887,924..926,936..938)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    960..1022
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1044..1106
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1044..1046,1053..1055,1092..1094,1104..1106)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1128..1190
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1128..1130,1137..1139,1176..1178,1188..1190)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1212..1274
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1212..1214,1221..1223,1260..1262,1272..1274)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1296..1358
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1380..1442
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1380..1382,1389..1391,1428..1430,1440..1442)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1452..1916
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1464..1526
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1464..1466,1473..1475,1512..1514,1524..1526)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1548..1610
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1548..1550,1557..1559,1596..1598,1608..1610)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1563..1565,1569..1571,1575..1577,1581..1586,
                     1593..1598,1605..1607,1647..1649,1653..1655,1665..1670,
                     1677..1682,1689..1691,1731..1733,1737..1739,1743..1745,
                     1749..1754,1761..1766,1773..1775)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1632..1694
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1716..1778
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1800..1862
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1884..1946
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1920..1997
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1968..2030
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 ggctaggttg ctccgcagca tgtgggatct tcccagacca ggaatcaaac ctgtgtcccc
       61 tgcattggca agcagattct taaccactgc accaccaggg aaatcccacc atagttgtgc
      121 tttaaaagtg gcatatcgtg gatacttcat cccttgtgag aagcctttaa aagatttact
      181 tgaaattggt tgagaagact gttttcgata taagttttca agtggaaatg ttataatcat
      241 gatctggaag ccgtaatcaa tttgttggga aatctccagg gtatattaca ccacacatca
      301 tgtgttatct ctttataatg aagttttatg tatctagagt gtgtatgtat ctgtaggtat
      361 atctgaaagt cagatgttca tgtcaacact gagaatgatg tgattggacc caaaataccg
      421 tttgagattt ctgtacactc gacccccacc tccttagtgc ttgacacctg taccatcctc
      481 ccctggcaga gatggcccta tctgaaacaa tgtccataat attttaggaa tcagtgacct
      541 tcaaggatgt agctgtagac ttcacccagg aagagtgggc cctactggac acatcccaga
      601 ggaaactatt cagagatgtg atgctagaga acatcagtca tctggtctca gttggcaatc
      661 agctctacaa attagatgtg atttcccatt tggagcaagg agagcaactt tcaagagaag
      721 agttaggttt tctgcaaggc cagagtccag tcatttcagg tagagaagat gatctgagaa
      781 aacaggaaat gatatccatg caacatatct acaagaaaga cacatctgta atcagtgcaa
      841 tgcagagatc tcacagtcaa gaggatcttt tggaatgcaa tgatttcaga gaaaaattta
      901 ctgaaatctt aacattgact caatatgtga tacctcaagt gggaaagaaa ccctttatca
      961 gccaagattt tggaaaagcc atcagttact tgtcatcctt tgacatacat aagcaaattc
     1021 atgctagaag taaatcatac gaatgtcatc aacgtacaaa tgcctttatt caaagttctg
     1081 cccttaggca gcacaataat actcaaactg gagagaaaac atttgaatgt catgtatgta
     1141 ggaaagcctt cagtaaaagt tctaacctta gacgacatga gatgattcat accggagtga
     1201 aaccacatgg atgtcatctg tgtgggaaat gctttactca ttgttctgac cttagaaaac
     1261 atgaaagaat tcacactgga gagaaattat atggatgtca tctgtgtggg aaagccttca
     1321 gtaaaagtta taaccttagg cgacatgaga tgattcacac tagagagaaa ccaaatgaat
     1381 gtcatctgtg tgggaaagcc ttcactcatt gttctgacct tagaaaacat gagagaactc
     1441 actttggaga gaaaccatat ggatgccatc tatgtgggaa gacattcagt aaaacttctt
     1501 accttagaca acatgagaga actcacaatg gagagaaacc atatgaatgt catctatgtg
     1561 ggaaggcctt cactcattgt tctcacctta gaaaacatga gagaactcat actggagaga
     1621 aaccatatga atgtcatcta tgtggaaaag ccttcactga gtcttctgtc cttagacgac
     1681 atgagagaac tcacactgga gagaaaccat atgaatgtca tctgtgttgg aaagccttca
     1741 ctgattcctc tgtccttaag cgacatgaga gaactcacac tggagaaaaa ccatatgaat
     1801 gtcacttatg tgggaaagcc ttcaatcact cttctgtcct tagaagacat gaaagaactc
     1861 acactggtga gaagccatat gaatgcaata tatgtggtaa agccttcaat agaaattata
     1921 actttagatt gcataagaga attcacactg gagagaaacc gcataaatgt tatctatgtg
     1981 ggaaagcctt cagtaaatat tttaacctta gacaacatga gagaactcat gctgtaaagg
     2041 tagtaaatgt ggaagattca ccacccatag cttcaaagta taaacactat tgtggactcc
     2101 cacagtgaag aaatactatg tttatattca gtgtataaga gcctttattc gttcttatta
     2161 ctccactcaa agttaataca aagtggagag aatccatatg tatgttacct atgtaacaaa
     2221 acatttagca gtggactcag gtgggagaac tgaaactgca aatggaatga atgtgggaga
     2281 atcttcatcc tcagctgtaa ctgttaaact aaatggataa atcacatgtc agagaaattc
     2341 tatgtctgta atcagtgtgg aaatgccttg agttataaat tatcctttaa ataaataaac
     2401 tgcacaagag agaaattcta gacctgtaat cactgtgca
//
LOCUS       XM_032618400            2898 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596 (ZNF596),
            transcript variant X9, mRNA.
ACCESSION   XM_032618400
VERSION     XM_032618400.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2898
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2898
                     /gene="ZNF596"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746741"
     CDS             1251..2567
                     /gene="ZNF596"
                     /codon_start=1
                     /product="zinc finger protein 596 isoform X6"
                     /protein_id="XP_032474291.1"
                     /db_xref="GeneID:116746741"
                     /translation="MISMQHIYKKDTSVISAMRSHSQEDLLECNDFREKFTEILTLTQ
                     YVIPQVGKKPFISQDFGKAISYLSSFDIHKQIHARSKSYECHQRTNAFIQSSALRQHN
                     NTQTGEKTFECHVCRKAFSKSSNLRRHEMIHTGVKPHGCHLCGKCFTHCSDLRKHERI
                     HTGEKLYGCHLCGKAFSKSYNLRRHEMIHTREKPNECHLCGKAFTHCSDLRKHERTHF
                     GEKPYGCHLCGKTFSKTSYLRQHERTHNGEKPYECHLCGKAFTHCSHLRKHERTHTGE
                     KPYECHLCGKAFTESSVLRRHERTHTGEKPYECHLCWKAFTDSSVLKRHERTHTGEKP
                     YECHLCGKAFNHSSVLRRHERTHTGEKPYECNICGKAFNRNYNFRLHKRIHTGEKPHK
                     CYLCGKAFSKYFNLRQHERTHAVKVVNVEDSPPIASKYKHYCGLPQ"
     misc_feature    1335..1397
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1335..1337,1344..1346,1383..1385,1395..1397)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1419..1481
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1503..1565
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1503..1505,1512..1514,1551..1553,1563..1565)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1587..1649
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1587..1589,1596..1598,1635..1637,1647..1649)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1671..1733
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1671..1673,1680..1682,1719..1721,1731..1733)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1755..1817
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1839..1901
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1839..1841,1848..1850,1887..1889,1899..1901)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <1911..2375
                     /gene="ZNF596"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1923..1985
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1923..1925,1932..1934,1971..1973,1983..1985)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2007..2069
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2007..2009,2016..2018,2055..2057,2067..2069)
                     /gene="ZNF596"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2022..2024,2028..2030,2034..2036,2040..2045,
                     2052..2057,2064..2066,2106..2108,2112..2114,2124..2129,
                     2136..2141,2148..2150,2190..2192,2196..2198,2202..2204,
                     2208..2213,2220..2225,2232..2234)
                     /gene="ZNF596"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2091..2153
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2175..2237
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2259..2321
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2343..2405
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2379..2456
                     /gene="ZNF596"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    2427..2489
                     /gene="ZNF596"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gcggaagcgg atttcgggag cgaaggtccc gtcggccttg ccgcctgttg cttggactgt
       61 gtgtaagtga aaacccagaa gtcagctggc agctgagcta gttacaatgg aatcacagga
      121 atcagtgacc ttcaaggatg tagctgtaga cttcacccag gaagagtggg ccctactgga
      181 cacatcccag aggaaactat tcagagatgt gatgctagag aacatcagtc atctggtctc
      241 agttggcaat cagctctaca aattagatgt gatttcccat ttggagcaag gagagcaact
      301 ttcaagagaa gagttaggtt ttctgcaagg ccagagtcca ggtgagatcc aagaagctgt
      361 gcttcaatag gaggaggagc ctggtcagtg agtgaatagg ccctaagaaa tatcacatga
      421 agatatctaa gtttagtgat attttaaaaa tttagacaat atcatagaaa aatttttcac
      481 atgatgtcat accttgcagg tatcaatttt ctattcacat gtttttctgc ctttgtcttt
      541 ggctttaggc aaggtgaaat ttatatactc actggagcta ataaacattc acagaaagtc
      601 ccttttcatg gtcctgtttt atgaatagga tcttctcttt tcctcctcaa cttgccatct
      661 tctttttttt tcttcctctt aagtgtttgt ttatttattg gctgccctgg gtcttcgttg
      721 tggcacatga gctcttcatt gtggtgtggg ggattctcta gttgtggcac gtgggctcag
      781 tagttgtggc tcccaggctc tctagttgtg gtgtgggctc tagagtgcat gggctcagta
      841 gttgcagcac acaggcttag ttgccctgtg gcatgtgaga tcttagttcc ccaaccaggg
      901 atcaaacctg catcccctgc attggaaggc agattcttaa ccactggacc acgagggaag
      961 tccccaccat cttcatttta tttttctcat gtttcagtcc tgagaatgac aattgttata
     1021 gtcctataat gtgtttcttg tctttagaat attccataat ttgatgtgct ttcgtttttt
     1081 tcttttcaga ctattcctta atttgacatt ctttgccatc tgtgtgtcag tatttgaaac
     1141 atacacaaat gggcattggg tctcttcacc attttaattc ctaataccac tatagagatt
     1201 ttaattttcc agtcatttca ggtagagaag atgatctgag aaaacaggaa atgatatcca
     1261 tgcaacatat ctacaagaaa gacacatctg taatcagtgc aatgagatct cacagtcaag
     1321 aggatctttt ggaatgcaat gatttcagag aaaaatttac tgaaatctta acattgactc
     1381 aatatgtgat acctcaagtg ggaaagaaac cctttatcag ccaagatttt ggaaaagcca
     1441 tcagttactt gtcatccttt gacatacata agcaaattca tgctagaagt aaatcatacg
     1501 aatgtcatca acgtacaaat gcctttattc aaagttctgc ccttaggcag cacaataata
     1561 ctcaaactgg agagaaaaca tttgaatgtc atgtatgtag gaaagccttc agtaaaagtt
     1621 ctaaccttag acgacatgag atgattcata ccggagtgaa accacatgga tgtcatctgt
     1681 gtgggaaatg ctttactcat tgttctgacc ttagaaaaca tgaaagaatt cacactggag
     1741 agaaattata tggatgtcat ctgtgtggga aagccttcag taaaagttat aaccttaggc
     1801 gacatgagat gattcacact agagagaaac caaatgaatg tcatctgtgt gggaaagcct
     1861 tcactcattg ttctgacctt agaaaacatg agagaactca ctttggagag aaaccatatg
     1921 gatgccatct atgtgggaag acattcagta aaacttctta ccttagacaa catgagagaa
     1981 ctcacaatgg agagaaacca tatgaatgtc atctatgtgg gaaggccttc actcattgtt
     2041 ctcaccttag aaaacatgag agaactcata ctggagagaa accatatgaa tgtcatctat
     2101 gtggaaaagc cttcactgag tcttctgtcc ttagacgaca tgagagaact cacactggag
     2161 agaaaccata tgaatgtcat ctgtgttgga aagccttcac tgattcctct gtccttaagc
     2221 gacatgagag aactcacact ggagaaaaac catatgaatg tcacttatgt gggaaagcct
     2281 tcaatcactc ttctgtcctt agaagacatg aaagaactca cactggtgag aagccatatg
     2341 aatgcaatat atgtggtaaa gccttcaata gaaattataa ctttagattg cataagagaa
     2401 ttcacactgg agagaaaccg cataaatgtt atctatgtgg gaaagccttc agtaaatatt
     2461 ttaaccttag acaacatgag agaactcatg ctgtaaaggt agtaaatgtg gaagattcac
     2521 cacccatagc ttcaaagtat aaacactatt gtggactccc acagtgaaga aatactatgt
     2581 ttatattcag tgtataagag cctttattcg ttcttattac tccactcaaa gttaatacaa
     2641 agtggagaga atccatatgt atgttaccta tgtaacaaaa catttagcag tggactcagg
     2701 tgggagaact gaaactgcaa atggaatgaa tgtgggagaa tcttcatcct cagctgtaac
     2761 tgttaaacta aatggataaa tcacatgtca gagaaattct atgtctgtaa tcagtgtgga
     2821 aatgccttga gttataaatt atcctttaaa taaataaact gcacaagaga gaaattctag
     2881 acctgtaatc actgtgca
//
LOCUS       XM_032618401             938 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RING finger protein 11-like
            (LOC116746743), mRNA.
ACCESSION   XM_032618401
VERSION     XM_032618401.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..938
                     /gene="LOC116746743"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746743"
     CDS             22..471
                     /gene="LOC116746743"
                     /codon_start=1
                     /product="RING finger protein 11-like"
                     /protein_id="XP_032474292.1"
                     /db_xref="GeneID:116746743"
                     /translation="MGNCLKSSILDDSSVPESPSRWVGPGGRRRWDQEPHPEQVPNPI
                     RLPTPSSLHQAAQLMEEEQVRLAQRISHKEHLPQGVYGTDRFEEKIQEECVICWLEFV
                     RGDSIRSLPCAHFYHLNCINEWLTRSFTCPYCRRPVDVTQPSSQDIN"
     misc_feature    298..423
                     /gene="LOC116746743"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(301..303,310..312,355..357,361..363,370..372,
                     379..381,412..414,421..423)
                     /gene="LOC116746743"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
ORIGIN      
        1 tctcacaccc aggcctgaaa gatggggaac tgcctcaaat ccagcatctt ggatgacagc
       61 tctgttcctg agtctccatc ccgctgggtg ggcccaggcg ggaggagacg ctgggatcag
      121 gaaccacatc cggaacaagt tccaaatccc atccgtcttc caacacccag ctcgcttcac
      181 caagcagcac agctgatgga agaggaacaa gtgaggttag ctcaaagaat cagccataaa
      241 gagcacctgc ctcaaggagt gtacggaaca gatagatttg aagaaaagat ccaggaggag
      301 tgtgtgattt gttggttgga gtttgtgcgt ggggactcca tcagatctct gccctgcgct
      361 cacttctatc acctgaactg catcaatgag tggttgacca ggtccttcac ctgcccctac
      421 tgtcgcaggc ccgtggatgt cacacagcct tcatcccagg acattaattg agccaggatc
      481 ccttgtttga tttcaagtgt cccatcattt ttagtgattt tgatattttg tcatcgtgtc
      541 taagtagcca gggattagga gttaaaatca tgcccaaaga tttcctaaaa actcctgtca
      601 tgttgcagat gatggcaaac aatttataat gttttagaaa cttagggaga taatagcatg
      661 taaagccttg accaagtgtt cagaagtgta attatatctt agcatttttc cagtacatgg
      721 gatgtgtacc atgttgcagc agctatacat gttgtattgt gtctgttgaa gattagggaa
      781 aagaaaatgg ttacttttcc taagtgatat aactttcttc tccccaatcc aaactggcat
      841 ttggaccaag gttttatgaa aaactacaat ttatacaact gaactaaaat gaaatccaat
      901 tatatatgag tgaataaatg aagaatctta ttttcaaa
//
LOCUS       XR_004347859             268 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746744
            (LOC116746744), ncRNA.
ACCESSION   XR_004347859
VERSION     XR_004347859.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..268
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..268
                     /gene="LOC116746744"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746744"
     ncRNA           1..268
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746744"
                     /product="uncharacterized LOC116746744"
                     /db_xref="GeneID:116746744"
ORIGIN      
        1 tgcatcccag gtaatccaca ggaaccaaga gatggtagct actaatatac tcttcccacg
       61 gtgcctcttc ataccatgcg gactcctaca agggaaataa gtatcacaac tttgtttgaa
      121 cgtggtctgg atctactacc aaaagcacaa gcaacaaaag acagatgaat tggacttcct
      181 caaaatgaaa aacagttgtg tataaaagga gcaaggaata agtctcagat ttacctgatg
      241 gccaccactc actgttcccg cagagccc
//
LOCUS       XM_032618402            3699 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorting nexin 25 (SNX25), transcript
            variant X1, mRNA.
ACCESSION   XM_032618402
VERSION     XM_032618402.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3699
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3699
                     /gene="SNX25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746745"
     CDS             237..3191
                     /gene="SNX25"
                     /codon_start=1
                     /product="sorting nexin-25 isoform X1"
                     /protein_id="XP_032474293.1"
                     /db_xref="GeneID:116746745"
                     /translation="MHPKATDSSGASLTEAPGERRPDSREDAAAPGGPGGGSWRAPVA
                     VAALAAVPLCFLGPGCWEAGSAGPGTVLLRLSLYLGCAAAAFLLGTLFSLVCRSPQAP
                     PPDFAAAWRRLAAAARRPPESPVCGNSVHESVQSRRVVISHNMDKALKEVFDYSYRDY
                     ILSWYGSLSRDEGQLYHLLSEDFWEVVRRLRHRLSRVDMVRVVCSDVVRALLAHFCDL
                     KAADARHEEQPRPFVLHAFLRNSDDEVRFLQTCSRVLVFCLLPSKDVQSLSLRIMLAE
                     ILTAKVLKPVVELLSNPDYINQMLLAQLEHREQVNEHHKRAYTYAPSYEEFIKLINSN
                     SDVEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKETAAMKADLLRARNMKRYINQLT
                     VAKKQCEKRIRILGGPAYDQQEDGPLDEGEGPQSQKILQFEDILANASYREHFRTYME
                     RMDKRALISFWESVEYLKNAHKNEIPQLVGEIYQNFFVESKEISVEKSLYKEIQQCLV
                     GNKGIEVFCKIQGDIYEMLKDRYYPSFIVSDLYEKLMIKEEEKHVSQLISNKDEMDPG
                     GEAGEESVDDGTSRINEQTSFAVNKLRELNEKLDYKRQALNSIQNAPKPDKKIVSKLK
                     EEIILIEKERTELQLHMARTDWWCENLGMWKASITSGEVTEDNGEQMPCYFVMVSLQE
                     VGGVETKNWTVPRRLSEFQNLHRKLSECFPSLKKVQLPSLSKLPFKSVDQKFMEKSKN
                     QLNKFLQNLLSDERLCQSEALYAFLSPSPDYLKVIDVQGKKSTFSLSSFLERLPRDFF
                     SHQEEEAEEDSDLSDCGDDVDGRKDSLAEPCFMLIGEIFELRGMFKWVRRTLIALVQV
                     TFGRTINKQLRDAVDWALSEQMVVYYIGALRDALWPGGNLAPPNTIPSEEQSQETKRR
                     AQQKLLENIPDMLQSLVGQQNARHGIIKIFNALQETRANKHLLYVLMELLLIELCPEL
                     RTHLDELKACQV"
     misc_feature    672..1139
                     /gene="SNX25"
                     /note="PXA domain; Region: PXA; pfam02194"
                     /db_xref="CDD:460484"
     misc_feature    1539..1865
                     /gene="SNX25"
                     /note="Regulator of G protein signaling (RGS) domain
                     superfamily; Region: RGS; cl02565"
                     /db_xref="CDD:470619"
     misc_feature    2172..2540
                     /gene="SNX25"
                     /note="The phosphoinositide binding Phox Homology domain
                     of Sorting Nexin 25; Region: PX_SNX25; cd06878"
                     /db_xref="CDD:132788"
     misc_feature    order(2322..2330,2409..2414,2448..2450)
                     /gene="SNX25"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:132788"
     misc_feature    2769..3089
                     /gene="SNX25"
                     /note="Sorting nexin C terminal; Region: Nexin_C;
                     pfam08628"
                     /db_xref="CDD:462541"
ORIGIN      
        1 tgagggcccg aggccgcgtg gcggcgctga ggggtcgccg agaggagctc cgcgttgtct
       61 gttggagccg ttccctcgtt gggccgccgg cgagggcatg agcgcggact ccctctgcct
      121 ccagagcggc gggagcggcg aggggagaag gcgccgcttg gaggccaccg tccagggcag
      181 cgccggggga gagcagggcg ggagatgtgc ctgtccttag cggcccagga agcagcatgc
      241 accccaaggc caccgacagc agcggcgcca gcctcacgga agccccgggc gagcggcggc
      301 cggattcccg ggaggacgcg gcagcccccg ggggcccagg cggcgggagc tggcgggcgc
      361 cggtggccgt ggccgccctc gccgccgtgc ccctctgctt cctggggccc ggctgctggg
      421 aagcgggaag cgcggggccg ggcaccgtcc tgctcaggct cagcctgtac ctgggctgcg
      481 ctgcggccgc cttcctgctg gggaccttgt tctccctggt ctgccggagc ccgcaagctc
      541 cgccgcccga cttcgccgcc gcctggagac ggctggccgc ggccgcccgc cgcccgccgg
      601 agagtcctgt gtgtggaaac tctgtacacg agtcagttca gtctagaagg gtagtcattt
      661 ctcataacat ggacaaggct ctgaaagaag tgtttgacta cagttacaga gactacatcc
      721 tgtcctggta tggaagcctc agcagagacg aggggcagct ctaccacctg ctttccgagg
      781 acttctggga agttgtcaga cggctgcgcc acaggctgag ccgcgtggac atggtcagag
      841 ttgtctgcag tgatgtcgtg agagctttac tcgctcactt ctgtgacctg aaggcggcag
      901 acgccagaca tgaagaacag ccgaggccct ttgtgttgca tgcattcttg aggaactcag
      961 atgatgaagt aagatttcta caaacgtgtt ctcgggttct ggtgttttgt ctccttccct
     1021 caaaggatgt ccagtctctc agcttacgca taatgctcgc agaaattctc acagcaaaag
     1081 tcttaaagcc agtagtggag ttacttagta atccagatta cattaaccag atgttgcttg
     1141 cccagttgga gcacagagaa caggtgaatg aacatcacaa gagagcctac acgtatgctc
     1201 cctcctatga agagttcatc aagcttatta acagcaactc tgatgttgag ttcttgaagc
     1261 aactaaggta tcaaattgta gtggaaataa tccaagcaac tacaattagc agcttccccc
     1321 agctgaagag gcacaagggt aaagaaactg ctgctatgaa ggctgatctc ctgagggcca
     1381 ggaacatgaa aaggtacatt aaccaactga ctgtggcaaa gaagcagtgt gagaagagga
     1441 tcagaatcct gggaggccct gcctacgacc agcaagagga tgggcccttg gatgaggggg
     1501 aagggcctca aagccagaag attcttcaat tcgaagatat cttggccaat gcttcctacc
     1561 gagagcactt tcgaacatac atggaaagga tggacaagag agctctgatt agcttttggg
     1621 agtctgtgga atatttaaag aatgctcaca agaacgaaat tccacaatta gttggtgaaa
     1681 tttaccagaa tttcttcgtg gagagcaaag aaatatctgt ggaaaaatca ctttacaaag
     1741 aaatccagca gtgtcttgta ggaaataaag gaatcgaagt gttctgcaaa atccagggag
     1801 acatttatga gatgctgaag gataggtatt acccttcatt tattgtcagt gatctgtatg
     1861 agaaattgat gataaaagag gaagaaaagc atgtctccca gttgatttcc aacaaggatg
     1921 aaatggaccc gggaggcgag gctggtgagg aatctgtgga tgacggcacc agtcggatta
     1981 atgaacaaac cagttttgct gtaaacaaac tacgagaact aaatgagaaa cttgactata
     2041 agaggcaagc tctaaattct attcaaaatg caccaaaacc tgacaagaag attgtttcta
     2101 agttgaagga ggaaataatt ctaatagaga aagaacgcac agaacttcag ctgcacatgg
     2161 caagaacaga ttggtggtgt gagaacctcg gtatgtggaa agcctccatc accagtggag
     2221 aggttacaga agacaatggt gaacaaatgc cctgttactt tgtcatggta agcttacaag
     2281 aagttggagg agttgaaact aagaactgga cggtccccag aaggctcagt gagtttcaga
     2341 atttacaccg gaaacttagt gagtgtttcc cttctttaaa aaaagtccag ttgccttctc
     2401 ttagcaagct gcctttcaaa tctgtagatc aaaagtttat ggaaaagtca aagaatcaat
     2461 taaataagtt tttacagaat ctgctttcgg atgaaagact gtgtcagagt gaagcacttt
     2521 atgccttttt gagcccttct cctgactacc tcaaggttat tgacgtgcag gggaaaaagt
     2581 ccactttttc attatcctca tttctggaaa gactccctcg cgacttcttc tcccatcagg
     2641 aggaggaggc agaggaggac agtgacctgt cagattgtgg tgatgacgtg gatggaagga
     2701 aagactcctt ggctgaacca tgtttcatgc tgattgggga gatttttgaa cttcgaggaa
     2761 tgtttaaatg ggtgagaaga acattaattg ctctcgttca ggtcacgttc ggaagaacca
     2821 tcaacaaaca actccgggac gcagtggact gggctctcag cgagcaaatg gtggtctact
     2881 acatcggcgc tctccgggat gctttgtggc ccggtgggaa tttggcacct ccgaacacaa
     2941 tcccaagtga agagcaaagc caggaaacaa agcggagagc acagcagaag ctgcttgaaa
     3001 acattccaga tatgcttcag agccttgttg gacagcaaaa tgcccgtcat ggtataataa
     3061 aaatattcaa cgcactgcaa gaaacgagag ccaataagca tctgttatat gtgctgatgg
     3121 aactgctgct aattgaattg tgtcctgagc tgagaactca tttagatgaa cttaaggctt
     3181 gtcaggtttg agactccaca aataaaccat cagagaaatg tctgtaataa cagacatgaa
     3241 acattttcct cttttccaca gagggcttga ctgagaacca tactgatctt ttagttacct
     3301 ccctctagtt ctatgtgaat taagcagaac tggggggaaa acttgatgct gtatattagg
     3361 caacagaaaa atcacttgtt aattattttt attttaatat aaatccttta aaggtcaaca
     3421 tactgactga aatataagtg ttaatacgtg ataagaacct aggaactatt ttaaatattt
     3481 attaagtttt gttttaaagt ttgttttaaa tgaattatga acgttgtaca gttgatttcc
     3541 tcactgagga gtctgaacat tcctatattc gtgtgtgttg aatactgttg tgcaatgctt
     3601 tgtgtgaagt tattgtgaaa attttattgt ctttattttt accaaagatt tcccatagtt
     3661 tgaagcatct gaagcaataa aatatgaaaa cgaatcaca
//
LOCUS       XM_032618403            3070 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorting nexin 25 (SNX25), transcript
            variant X2, mRNA.
ACCESSION   XM_032618403
VERSION     XM_032618403.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3070
                     /gene="SNX25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746745"
     CDS             245..2929
                     /gene="SNX25"
                     /codon_start=1
                     /product="sorting nexin-25 isoform X2"
                     /protein_id="XP_032474294.1"
                     /db_xref="GeneID:116746745"
                     /translation="MHPKATDSSGASLTEAPGERRPDSREDAAAPGGPGGGSWRAPVA
                     VAALAAVPLCFLGPGCWEAGSAGPGTVLLRLSLYLGCAAAAFLLGTLFSLVCRSPQAP
                     PPDFAAAWRRLAAAARRPPESPVCGNSVHESVQSRRVVISHNMDKALKEVFDYSYRDY
                     ILSWYGSLSRDEGQLYHLLSEDFWEVVRRLRHRLSRVDMVRVVCSDVVRALLAHFCDL
                     KAADARHEEQPRPFVLHAFLRNSDDEVRFLQTCSRVLVFCLLPSKDVQSLSLRIMLAE
                     ILTAKVLKPVVELLSNPDYINQMLLAQLEHREQVNEHHKRAYTYAPSYEEFIKLINSN
                     SDVEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKETAAMKADLLRARNMKRYINQLT
                     VAKKQCEKRIRILGGPAYDQQEDGPLDEGEGPQSQKILQFEDILANASYREHFRTYME
                     RMDKRALISFWESVEYLKNAHKNEIPQLVGEIYQNFFVESKEISVEKSLYKEIQQCLV
                     GNKGIEVFCKIQGDIYEMLKDRYYPSFIVSDLYEKLMIKEEEKHVSQLISNKDEMDPG
                     GEAGEESVDDGTSRINEQTSFAVNKLRELNEKLDYKRQALNSIQNAPKPDKKIVSKLK
                     EEIILIEKERTELQLHMARTDWWCENLGMWKASITSGEVTEDNGEQMPCYFVMVSLQE
                     VGGVETKNWTVPRRLSEFQNLHRKLSECFPSLKKVQLPSLSKLPFKSVDQKFMEKSKN
                     QLNKFLQNLLSDERLCQSEALYAFLSPSPDYLKVIDVQGKKSTFSLSSFLERLPRDFF
                     SHQEEEAEEDSDLSDCGDDVDGRKDSLAEPCFMLIGEIFELRGMFKWVRRTLIALVQV
                     TFGRTINKLKDTVRQTFREFSTSENVSSRNEWLSVLPK"
     misc_feature    680..1147
                     /gene="SNX25"
                     /note="PXA domain; Region: PXA; pfam02194"
                     /db_xref="CDD:460484"
     misc_feature    1547..1873
                     /gene="SNX25"
                     /note="Regulator of G protein signaling (RGS) domain
                     superfamily; Region: RGS; cl02565"
                     /db_xref="CDD:470619"
     misc_feature    2180..2548
                     /gene="SNX25"
                     /note="The phosphoinositide binding Phox Homology domain
                     of Sorting Nexin 25; Region: PX_SNX25; cd06878"
                     /db_xref="CDD:132788"
     misc_feature    order(2330..2338,2417..2422,2456..2458)
                     /gene="SNX25"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:132788"
ORIGIN      
        1 cgggcagctg agggcccgag gccgcgtggc ggcgctgagg ggtcgccgag aggagctccg
       61 cgttgtctgt tggagccgtt ccctcgttgg gccgccggcg agggcatgag cgcggactcc
      121 ctctgcctcc agagcggcgg gagcggcgag gggagaaggc gccgcttgga ggccaccgtc
      181 cagggcagcg ccgggggaga gcagggcggg agatgtgcct gtccttagcg gcccaggaag
      241 cagcatgcac cccaaggcca ccgacagcag cggcgccagc ctcacggaag ccccgggcga
      301 gcggcggccg gattcccggg aggacgcggc agcccccggg ggcccaggcg gcgggagctg
      361 gcgggcgccg gtggccgtgg ccgccctcgc cgccgtgccc ctctgcttcc tggggcccgg
      421 ctgctgggaa gcgggaagcg cggggccggg caccgtcctg ctcaggctca gcctgtacct
      481 gggctgcgct gcggccgcct tcctgctggg gaccttgttc tccctggtct gccggagccc
      541 gcaagctccg ccgcccgact tcgccgccgc ctggagacgg ctggccgcgg ccgcccgccg
      601 cccgccggag agtcctgtgt gtggaaactc tgtacacgag tcagttcagt ctagaagggt
      661 agtcatttct cataacatgg acaaggctct gaaagaagtg tttgactaca gttacagaga
      721 ctacatcctg tcctggtatg gaagcctcag cagagacgag gggcagctct accacctgct
      781 ttccgaggac ttctgggaag ttgtcagacg gctgcgccac aggctgagcc gcgtggacat
      841 ggtcagagtt gtctgcagtg atgtcgtgag agctttactc gctcacttct gtgacctgaa
      901 ggcggcagac gccagacatg aagaacagcc gaggcccttt gtgttgcatg cattcttgag
      961 gaactcagat gatgaagtaa gatttctaca aacgtgttct cgggttctgg tgttttgtct
     1021 ccttccctca aaggatgtcc agtctctcag cttacgcata atgctcgcag aaattctcac
     1081 agcaaaagtc ttaaagccag tagtggagtt acttagtaat ccagattaca ttaaccagat
     1141 gttgcttgcc cagttggagc acagagaaca ggtgaatgaa catcacaaga gagcctacac
     1201 gtatgctccc tcctatgaag agttcatcaa gcttattaac agcaactctg atgttgagtt
     1261 cttgaagcaa ctaaggtatc aaattgtagt ggaaataatc caagcaacta caattagcag
     1321 cttcccccag ctgaagaggc acaagggtaa agaaactgct gctatgaagg ctgatctcct
     1381 gagggccagg aacatgaaaa ggtacattaa ccaactgact gtggcaaaga agcagtgtga
     1441 gaagaggatc agaatcctgg gaggccctgc ctacgaccag caagaggatg ggcccttgga
     1501 tgagggggaa gggcctcaaa gccagaagat tcttcaattc gaagatatct tggccaatgc
     1561 ttcctaccga gagcactttc gaacatacat ggaaaggatg gacaagagag ctctgattag
     1621 cttttgggag tctgtggaat atttaaagaa tgctcacaag aacgaaattc cacaattagt
     1681 tggtgaaatt taccagaatt tcttcgtgga gagcaaagaa atatctgtgg aaaaatcact
     1741 ttacaaagaa atccagcagt gtcttgtagg aaataaagga atcgaagtgt tctgcaaaat
     1801 ccagggagac atttatgaga tgctgaagga taggtattac ccttcattta ttgtcagtga
     1861 tctgtatgag aaattgatga taaaagagga agaaaagcat gtctcccagt tgatttccaa
     1921 caaggatgaa atggacccgg gaggcgaggc tggtgaggaa tctgtggatg acggcaccag
     1981 tcggattaat gaacaaacca gttttgctgt aaacaaacta cgagaactaa atgagaaact
     2041 tgactataag aggcaagctc taaattctat tcaaaatgca ccaaaacctg acaagaagat
     2101 tgtttctaag ttgaaggagg aaataattct aatagagaaa gaacgcacag aacttcagct
     2161 gcacatggca agaacagatt ggtggtgtga gaacctcggt atgtggaaag cctccatcac
     2221 cagtggagag gttacagaag acaatggtga acaaatgccc tgttactttg tcatggtaag
     2281 cttacaagaa gttggaggag ttgaaactaa gaactggacg gtccccagaa ggctcagtga
     2341 gtttcagaat ttacaccgga aacttagtga gtgtttccct tctttaaaaa aagtccagtt
     2401 gccttctctt agcaagctgc ctttcaaatc tgtagatcaa aagtttatgg aaaagtcaaa
     2461 gaatcaatta aataagtttt tacagaatct gctttcggat gaaagactgt gtcagagtga
     2521 agcactttat gcctttttga gcccttctcc tgactacctc aaggttattg acgtgcaggg
     2581 gaaaaagtcc actttttcat tatcctcatt tctggaaaga ctccctcgcg acttcttctc
     2641 ccatcaggag gaggaggcag aggaggacag tgacctgtca gattgtggtg atgacgtgga
     2701 tggaaggaaa gactccttgg ctgaaccatg tttcatgctg attggggaga tttttgaact
     2761 tcgaggaatg tttaaatggg tgagaagaac attaattgct ctcgttcagg tcacgttcgg
     2821 aagaaccatc aacaaattga aagacaccgt acggcaaaca tttagagaat tcagtaccag
     2881 tgaaaatgtg agctccagga atgaatggct gtcagtgtta ccaaaataaa aaaaaacttt
     2941 ccgagtcaga gtttaaaaat ccaattccta gtttattcat caaacgctta tcttaaccta
     3001 cccattgata aatgccttgt gagaatagag aataaggttt ttaaaaacct catccaagaa
     3061 atattttgct
//
LOCUS       XM_032618404            3413 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LRP2 binding protein (LRP2BP), mRNA.
ACCESSION   XM_032618404
VERSION     XM_032618404.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3413
                     /gene="LRP2BP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 97% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746746"
     CDS             16..1062
                     /gene="LRP2BP"
                     /codon_start=1
                     /product="LRP2-binding protein"
                     /protein_id="XP_032474295.1"
                     /db_xref="GeneID:116746746"
                     /translation="MKLTSEKLPKNPFYTSLSHYAANNQKLFQWRKEKTDHYSHAGLV
                     EKALHLLKERIRRGDTLAYFLLGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYY
                     DGLGMTADAEKGVEYMKKIVDSSCPKARHLQFAAAYNLGRAYYEGKGVKQSDEEAERL
                     WLFAADNGNPKASVKAQSILGLYYSTKEPRELEKAFYWHSEACGNGNLESQGALGLMY
                     FYGQGIHQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCAAFSKRIADYDEI
                     YDIPTIAQVTDCLPEFISRGMAMASFYHARCLQLGLGITKDEATAKHYYSKACRLNPS
                     LADELHTLLIRQRI"
     misc_feature    136..783
                     /gene="LRP2BP"
                     /note="TPR repeat [General function prediction only];
                     Region: TPR; COG0790"
                     /db_xref="CDD:440553"
     misc_feature    142..231
                     /gene="LRP2BP"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    238..324
                     /gene="LRP2BP"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    343..453
                     /gene="LRP2BP"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    472..573
                     /gene="LRP2BP"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    586..675
                     /gene="LRP2BP"
                     /note="SLR repeat [structural motif]; Region: SLR repeat"
                     /db_xref="CDD:276807"
     misc_feature    907..1011
                     /gene="LRP2BP"
                     /note="Sel1-like repeats; Region: SEL1; smart00671"
                     /db_xref="CDD:214772"
ORIGIN      
        1 cactgtggag acaggatgaa gttgaccagt gaaaagttgc ccaagaaccc cttttatact
       61 tctctatccc actatgctgc taataaccaa aaactcttcc aatggagaaa ggaaaagact
      121 gatcattaca gccatgctgg tttggtggaa aaggcattgc acctcttgaa ggaaagaata
      181 agaagagggg atactctggc atatttccta ctaggtcaac tgtattttga agagggatgg
      241 tatgaagaag cattagaaca gttcgaagaa atcaaggaaa aggatcatca ggcaacttac
      301 cagctaggag tgatgtatta tgatggcctg gggatgactg cagacgctga aaaaggagtg
      361 gaatatatga agaaaattgt tgattcttcg tgtcccaaag caagacactt acaatttgca
      421 gcagcttaca accttggaag agcttattat gaaggaaaag gcgttaaaca atcagacgag
      481 gaagctgaaa gactgtggct ttttgctgca gacaatggaa atccaaaagc tagtgtgaag
      541 gctcaaagta tcctaggatt gtattactca acaaaggaac ccagagagtt agagaaggca
      601 ttttattggc attcagaagc ttgtggcaat ggaaacctgg aatcccaggg tgcgcttggg
      661 ctcatgtact tttatggaca aggcatccac caggataccg aggctgccct gcattgcttg
      721 agggaagcag cagagcgtgg aaatgtctac gctcaaggga atctcgtgga gtattactat
      781 aagatgaaat tttttacaaa atgtgctgca ttttccaaaa ggattgctga ctacgatgag
      841 atttatgaca tccccacgat agcccaggtc acggactgtc tcccagaatt catcagcaga
      901 ggcatggcca tggcctcttt ctaccacgca cggtgtctgc agcttggctt gggtatcaca
      961 aaggatgaag caacagctaa acactattat tctaaagctt gtcgtctgaa tccttcattg
     1021 gcagatgaac ttcacacttt acttattcgt cagagaattt agactacaat gtatttcaac
     1081 aaagatcatt gatcctaaca acttagaatc tacaggatcg aactgcagga agagtcttca
     1141 aagatccagc tcttaggcta gagactgacc aagaccatgt caaatattga aaaccattcc
     1201 ataaagcaag tatttttttc ctttcttaaa tagtgtcctg aaagacttag tgtcatctta
     1261 gctttaataa cttcagaagt ataaatgcta caaacttatt tttaaaaatc tgaagtttaa
     1321 ttctttaaat ttctttaatc cttagtgttg tgaattttga ataactttta attttatttc
     1381 agtcatcgaa gacttctaaa atagaaaatt ccaaattgaa aattaaaaat ctaaatttaa
     1441 aataagtggg tttaagaaac tgcttacaat cttgcctttc catatcttcc cctaaacatc
     1501 ttaatgagta aaactgctat gttcctggta atcagttaaa acaagatgct tctctgtgct
     1561 tcaggtcctt ttctacattt taaaaaccct caatgtattt caaaacatga taaaatttca
     1621 aatcatctac caatataact aaactgttaa attagcaaga ggctttcctt atcaattaca
     1681 tctacagagg caaaatccga cagtaaaaat agaatccata tgcaaaagat tctaaagaaa
     1741 tatacatctg tgaaacagat attgaaaata acgtttaaga tacctgaaca acaccttctt
     1801 tgtaaatgtt atggctttat tttaaaaatc acaaccatcc tttccaaagt aatttataag
     1861 atctagtctt agcactggga aaatgcaatt aatatgtagg tgcctgtcac taaagaagta
     1921 ttatatggca caaaactact tgctcttgtt ttatgttctg gtttgtctat attatttgaa
     1981 cttcactttg ttgaaatttc ttccctgtat ctaaagacaa atataggcca tacacttctc
     2041 ctttaaatct tagagtagaa acttaaataa tccctgaaac ccattccttt acttttaaaa
     2101 tctctgctga agactctctt cttccccagt aacaacattt ccatgtctct agcccattaa
     2161 aagatttcat aaaacctaac gtaaatcgtt ctacaataca agcccacttg cttttgctct
     2221 tgttttctta ataacgtcca cagaacattc cttcagtggt ttgaagatcc aaatttccaa
     2281 cggtattctc ttctccacac tcaatccagt tccttaagcc tttaagaatc ttaaaataga
     2341 aatgtaataa ggcagtgtat ggggactgtg atagcacttt catagctcgc tcactctaca
     2401 tccccaaagt gaaggccact ttaactgcca ttaaaacacg gtttgagaaa tcctaaaggt
     2461 aggaatttga catgtcatat ttggtaatat gctgtgctta aatgtcctaa gtgaacccaa
     2521 cacagaattt aaaatttcag tttactctag ttaccataaa gctggcaaac ctggcccagg
     2581 tgagcccctg caaactacca ctactcccaa catggtgcac accttgatct gtgattggag
     2641 tcacccttta agtgaggtga agcttcaagg tcattaactt ttttcaaaaa taaaatcaaa
     2701 acttctgtaa gcgtccttac agttgataac ttatgaaaaa gtaagacgac ttcttaagga
     2761 ttgaggagtc ataacagcca tggtttaatt atgcagaaga tggtcacttt tagtaactgc
     2821 tatgagttcc tggggcttgg tgacttcaca ctgcttctct tctctgaatg tcttttctac
     2881 atccctatga aggataattc ttatccatat aaatagccaa ctttgagttt tttcgaaagt
     2941 atctaatatc ttggtttgaa ataaggatca aagagctgta gctaaaagta tatcaaagat
     3001 aaaatttgct ttactaattt ttaaccattt atctttcagc acttatgttt catatcaaga
     3061 acttggcata tcaggaactc agcagtgcgt tgaatatttt tattatacca tgacgggcat
     3121 tttgctgtcc aacaaggctc tgaagcatat ctgaaaaatt aagtttatat tccacgctgc
     3181 tattgataaa gtgcaccctg cacggacctt cagtgagggg ctacgacata cgcacacaca
     3241 gcacgtaaag gcacggagac gcgaggaaca tgagtgatca gctgtttcca atgtttgttt
     3301 aaggagaaaa tgtagaattt ttcaatataa ggcatttata caagctataa gtgaaaaagg
     3361 agaagggcca tcaacactcc cttttcatgt gactttcagg gtcagagccc agg
//
LOCUS       XR_004347860            1172 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746747
            (LOC116746747), ncRNA.
ACCESSION   XR_004347860
VERSION     XR_004347860.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1172
                     /gene="LOC116746747"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746747"
     ncRNA           1..1172
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746747"
                     /product="uncharacterized LOC116746747"
                     /db_xref="GeneID:116746747"
ORIGIN      
        1 cctcgccggc ggcccaacga gggaacggct ccaacagaca acgcggagct cctctcggcg
       61 acccctcagc gccgccacgc ggcctcgggc cctcagctgc ccggccgggc gtgcccaggt
      121 gtcagaagcg tttgtaattc tcgagctcag gtgatccctt aatcctctcc ccgcgcatca
      181 ctgacagccg cctcaggaac ggaatcagac aaatgtggag cagtagatga agcctgcaat
      241 tccttcttac ggaaaggccc aaaaaagtct gcctggtgcc agagggtgtg cacagctgcc
      301 atagtcactg gctccaagtc cctgtatttt tgtcgccgac gattcagtac aaatgctact
      361 acccacgcaa gtgaaagtag tccagataat tttgagagta catattttct tctcctatca
      421 tggtcccagc gttaatatac agataatgct tactgagaag atgccaacat gcgaaatact
      481 agaaattatg aacgccagaa aagcagcaga tgtatcttta atgaataaag gaattctaaa
      541 gacgttaatg ataatttaaa agggggtgat agagagggca aatcaacaat aaaaagggga
      601 agaaagggaa agaggtaaac agatgagctg aagccgagaa ggatacggga aacattaaaa
      661 agcaaaagcc cagaactctc tccatgcagc agtcatgaag aatttcaaca gtttaaaagc
      721 gctattgttt cgcaataaat tgagttatat cctgcttccc aggagacata gttaggaaaa
      781 gtaagcatta aaatatattt tcaaatactg tgactatact gggtttttct ataagcaata
      841 tctgtcgttt caacagaggg aaaaatatat aacattcata caaagtaaac tatttagtgg
      901 atatttattc ttttaaaaca aagtattatc gaagaggtta ttaatcaaaa gaagaaatac
      961 cagtgtccat agacataaac agcccaccca tgtattcaca tcattgtaat aaattttcct
     1021 ggaatggcat ggatttcaag tgggagatga agtaggaggt ctaaaaaaaa attatcccta
     1081 atattaagct ctaacaaaac agcgtagaaa tgaattattt tatgtaccta tataaaaata
     1141 aatatgttca catttgtcat tttttaaaag tt
//
LOCUS       XM_032618405            2786 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dCMP deaminase (DCTD), transcript variant
            X1, mRNA.
ACCESSION   XM_032618405
VERSION     XM_032618405.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2786
                     /gene="DCTD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746748"
     CDS             144..680
                     /gene="DCTD"
                     /codon_start=1
                     /product="deoxycytidylate deaminase isoform X1"
                     /protein_id="XP_032474296.1"
                     /db_xref="GeneID:116746748"
                     /translation="MSEFPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNA
                     ENKIVGIGYNGMPNGCSDDLLPWRRTAESILDTKYPYVCHAELNAIMNKNSADVKGCT
                     MYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSNETRAARLMLEMAGVSFRKFTPKCS
                     QIVIDFDSINSRPSQTLQ"
     misc_feature    165..617
                     /gene="DCTD"
                     /note="Deoxycytidylate deaminase [Nucleotide transport and
                     metabolism]; Region: ComEB; COG2131"
                     /db_xref="CDD:441734"
ORIGIN      
        1 cagcgcctcc ccgcccgacc cagttcgctg cctgccaaca aacccctccc gcgaggaaca
       61 gtgaacctgc tccggcgacg tcgcaggccc gttccagggg cccaagccgc ttccccttag
      121 tcctgccccg aaaaaaaccc agcatgagtg aatttccctg taaaaaacgt gatgactatt
      181 tggaatggcc tgagtatttc atggcagtgg ccttcttatc ggcacagagg agcaaagatc
      241 caaactccca ggtcggagcc tgcatcgtga atgcagaaaa caagattgtg ggcattgggt
      301 acaatggaat gccaaatgga tgcagcgatg acctcttgcc ttggaggagg acagcggaga
      361 gtatactgga taccaaatac ccttacgtgt gccacgccga gctgaatgcc attatgaaca
      421 aaaactcagc agatgtgaaa ggctgtacca tgtatgtcgc cttgttcccg tgtaatgaat
      481 gtgctaagct catcatccag gcagggataa aagaagtcat tttcatgtct gataaatacc
      541 acgacagcaa tgagacaaga gccgcgaggc tcatgttgga aatggccggg gtttccttca
      601 ggaaattcac accaaagtgc agccagattg tcattgactt tgattcaatt aacagcagac
      661 cgagtcagac gctccagtga cttacatctc attaaatctc cagaagattg gattatcctc
      721 ttctaagaag ctgctaatgc ctttcatctt gaagttacac ataacttttt aatagccggg
      781 acggcaaaag tcgacatctg aagaatgtaa aagctcaaat cttcctgact cgctctcctg
      841 tcacgtggaa tctgcatctg ttgaaactat cgatttaggg tgtaaaataa aggagctgtg
      901 ggtgcgcacg gggctggagc gggcacctcc cctcctgtcc cctgattcgc tgggacgctg
      961 gtggctgcgc agaagggcat cagccgtgcg tcgtccactg cgtttcacag ccgttcttca
     1021 acgccacgtg tgctgggagg acaaacaaat aactgtggct gtgtgcctac cgggatgagc
     1081 agacacgctg atctgaacat cgggcccgaa tgaagcatca catgtaatgc ccttggggaa
     1141 aggaaaggag ccgcaagaca gtagcattta agtgtttgct ttcgagagtt gagggagccc
     1201 ccagccgccc agccacccgc ccaaaagtcc tggacggggt gcgccttcgt cctggcagat
     1261 gatgagtgca actgagcggg cgttctttcc cccgctctgc tgtcctgcct cccacagggc
     1321 ggtgccgcgg tgtgcctctg cacggtgggg acgtctgttg ttcgtgcttc ttattctggc
     1381 tttgtgggtt acacagagct cttacattag tttatttgag taatgagtcg ttccccgggg
     1441 aaggcagccc gtcgtcgccc tgcgtcaccc ccaggtccac accctgcccg ggggcggagc
     1501 cccgcaccgc tgctgcacgt gccagcacgg ttcattccca gggctgctgt ctcccgtcct
     1561 gtaagtgaaa tgaacgtgag gaggtgtcag ttccgtccag atctcttggt gacaggagct
     1621 cacttgcgct cctggtgccc tgccttcatt gacacacatc tcaccttcct aatcacttcg
     1681 atttggggga tgggtggcag tgcaccttgt ctttaatctc atttcatttt tattaaatgt
     1741 gctcagtacc ttcgttgaga aaatggttcc tttatcctaa agatcatgac cattttaaag
     1801 tgctcttaca tctttatgag tttttatatt gtttctgagg ttttggattc cgtattctgg
     1861 ggcacgtcat ttctgtgttg tctgtgaagc acacttgcac atgttttaat gctcagagaa
     1921 cagtttgagg cacggatgcc atgtgccttc cccaggagat tgaagatgtc cgggaaggct
     1981 ctcttccctc tctctctcca tcgtgccctg ctcctgtctc gggtgtggcc atctgatctg
     2041 acaggtcatc tccaccaccc aataggtccc aggcctcctc cctcccataa tcctccagtc
     2101 tccagtgctg gcttgtctgc tgctttccta ccgtattctt tctctaaatc tccttttctc
     2161 gcctcaaatt ttttctctct tatctcctcc aaaccccctg ccctctgctc taaaatgcat
     2221 aaaacaaaaa caaaaagtat atagacgcaa gaaatcagta aagatattta aagatagaaa
     2281 atacgttaga tttttgtgtt gctgtgaatg agttgtgagc cctttcagca aggaatgtgt
     2341 cattgtttat gtcacattcg taaatatgtc taggggctac tgccctgcac agtcagcctt
     2401 ctgtgtttac ggatttctgc atctgcggat tcaaccaacc tcacatggaa aatgttcagg
     2461 aaaaagttcc agaaagttcc gaaaagcaaa actcgggttt gccgtgcacc tcacaggcag
     2521 atactgcgtg ttttacgtat tggaggtcag ttgcagccct tcttgaagca agtctcccag
     2581 cgccattttt tcagcagcat ttgcacactt cacgtctctg cgtcacattt tgataattct
     2641 cacgatattt taaacttttt ctttactaac gtttattatg gtgatcagtg atctttgagg
     2701 ttttaccgtt gcaaaaagat tatacgactc cctgaaggtt ctgatgatgg ttcgcatttt
     2761 ttagcaataa agtatttctt gattaa
//
LOCUS       XM_032618407            2700 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dCMP deaminase (DCTD), transcript variant
            X2, mRNA.
ACCESSION   XM_032618407
VERSION     XM_032618407.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2700
                     /gene="DCTD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746748"
     CDS             1..594
                     /gene="DCTD"
                     /codon_start=1
                     /product="deoxycytidylate deaminase isoform X2"
                     /protein_id="XP_032474298.1"
                     /db_xref="GeneID:116746748"
                     /translation="MQLRGICASRAAPPRPTQFAACQQTPPARNSEPAPATSQARSRG
                     PSRFPLVLPRKKPSMSEFPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNA
                     ENKIVGIGYNGMPNGCSDDLLPWRRTAESILDTKYPYGIKEVIFMSDKYHDSNETRAA
                     RLMLEMAGVSFRKFTPKCSQIVIDFDSINSRPSQTLQ"
     misc_feature    196..531
                     /gene="DCTD"
                     /note="Deoxycytidylate deaminase [Nucleotide transport and
                     metabolism]; Region: ComEB; COG2131"
                     /db_xref="CDD:441734"
ORIGIN      
        1 atgcagcttc gaggcatttg tgcctcgagg gcagcgcctc cccgcccgac ccagttcgct
       61 gcctgccaac aaacccctcc cgcgaggaac agtgaacctg ctccggcgac gtcgcaggcc
      121 cgttccaggg gcccaagccg cttcccctta gtcctgcccc gaaaaaaacc cagcatgagt
      181 gaatttccct gtaaaaaacg tgatgactat ttggaatggc ctgagtattt catggcagtg
      241 gccttcttat cggcacagag gagcaaagat ccaaactccc aggtcggagc ctgcatcgtg
      301 aatgcagaaa acaagattgt gggcattggg tacaatggaa tgccaaatgg atgcagcgat
      361 gacctcttgc cttggaggag gacagcggag agtatactgg ataccaaata cccttacggg
      421 ataaaagaag tcattttcat gtctgataaa taccacgaca gcaatgagac aagagccgcg
      481 aggctcatgt tggaaatggc cggggtttcc ttcaggaaat tcacaccaaa gtgcagccag
      541 attgtcattg actttgattc aattaacagc agaccgagtc agacgctcca gtgacttaca
      601 tctcattaaa tctccagaag attggattat cctcttctaa gaagctgcta atgcctttca
      661 tcttgaagtt acacataact ttttaatagc cgggacggca aaagtcgaca tctgaagaat
      721 gtaaaagctc aaatcttcct gactcgctct cctgtcacgt ggaatctgca tctgttgaaa
      781 ctatcgattt agggtgtaaa ataaaggagc tgtgggtgcg cacggggctg gagcgggcac
      841 ctcccctcct gtcccctgat tcgctgggac gctggtggct gcgcagaagg gcatcagccg
      901 tgcgtcgtcc actgcgtttc acagccgttc ttcaacgcca cgtgtgctgg gaggacaaac
      961 aaataactgt ggctgtgtgc ctaccgggat gagcagacac gctgatctga acatcgggcc
     1021 cgaatgaagc atcacatgta atgcccttgg ggaaaggaaa ggagccgcaa gacagtagca
     1081 tttaagtgtt tgctttcgag agttgaggga gcccccagcc gcccagccac ccgcccaaaa
     1141 gtcctggacg gggtgcgcct tcgtcctggc agatgatgag tgcaactgag cgggcgttct
     1201 ttcccccgct ctgctgtcct gcctcccaca gggcggtgcc gcggtgtgcc tctgcacggt
     1261 ggggacgtct gttgttcgtg cttcttattc tggctttgtg ggttacacag agctcttaca
     1321 ttagtttatt tgagtaatga gtcgttcccc ggggaaggca gcccgtcgtc gccctgcgtc
     1381 acccccaggt ccacaccctg cccgggggcg gagccccgca ccgctgctgc acgtgccagc
     1441 acggttcatt cccagggctg ctgtctcccg tcctgtaagt gaaatgaacg tgaggaggtg
     1501 tcagttccgt ccagatctct tggtgacagg agctcacttg cgctcctggt gccctgcctt
     1561 cattgacaca catctcacct tcctaatcac ttcgatttgg gggatgggtg gcagtgcacc
     1621 ttgtctttaa tctcatttca tttttattaa atgtgctcag taccttcgtt gagaaaatgg
     1681 ttcctttatc ctaaagatca tgaccatttt aaagtgctct tacatcttta tgagttttta
     1741 tattgtttct gaggttttgg attccgtatt ctggggcacg tcatttctgt gttgtctgtg
     1801 aagcacactt gcacatgttt taatgctcag agaacagttt gaggcacgga tgccatgtgc
     1861 cttccccagg agattgaaga tgtccgggaa ggctctcttc cctctctctc tccatcgtgc
     1921 cctgctcctg tctcgggtgt ggccatctga tctgacaggt catctccacc acccaatagg
     1981 tcccaggcct cctccctccc ataatcctcc agtctccagt gctggcttgt ctgctgcttt
     2041 cctaccgtat tctttctcta aatctccttt tctcgcctca aattttttct ctcttatctc
     2101 ctccaaaccc cctgccctct gctctaaaat gcataaaaca aaaacaaaaa gtatatagac
     2161 gcaagaaatc agtaaagata tttaaagata gaaaatacgt tagatttttg tgttgctgtg
     2221 aatgagttgt gagccctttc agcaaggaat gtgtcattgt ttatgtcaca ttcgtaaata
     2281 tgtctagggg ctactgccct gcacagtcag ccttctgtgt ttacggattt ctgcatctgc
     2341 ggattcaacc aacctcacat ggaaaatgtt caggaaaaag ttccagaaag ttccgaaaag
     2401 caaaactcgg gtttgccgtg cacctcacag gcagatactg cgtgttttac gtattggagg
     2461 tcagttgcag cccttcttga agcaagtctc ccagcgccat tttttcagca gcatttgcac
     2521 acttcacgtc tctgcgtcac attttgataa ttctcacgat attttaaact ttttctttac
     2581 taacgtttat tatggtgatc agtgatcttt gaggttttac cgttgcaaaa agattatacg
     2641 actccctgaa ggttctgatg atggttcgca ttttttagca ataaagtatt tcttgattaa
//
LOCUS       XM_032618408            4144 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dCMP deaminase (DCTD), transcript variant
            X3, mRNA.
ACCESSION   XM_032618408
VERSION     XM_032618408.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4144
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4144
                     /gene="DCTD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 14 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746748"
     CDS             1454..2038
                     /gene="DCTD"
                     /codon_start=1
                     /product="deoxycytidylate deaminase isoform X3"
                     /protein_id="XP_032474299.1"
                     /db_xref="GeneID:116746748"
                     /translation="MCLSTAILLCFSSRPSMSEFPCKKRDDYLEWPEYFMAVAFLSAQ
                     RSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAESILDTKYPYVCHAE
                     LNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSNETRAARLM
                     LEMAGVSFRKFTPKCSQIVIDFDSINSRPSQTLQ"
     misc_feature    1523..1975
                     /gene="DCTD"
                     /note="Deoxycytidylate deaminase [Nucleotide transport and
                     metabolism]; Region: ComEB; COG2131"
                     /db_xref="CDD:441734"
ORIGIN      
        1 ggcggccggg gcagcgggcg gccgcgggga cgccccttcc cggtccaacg tgctgccggg
       61 gaagcggcgc ggggccggcg gcgcttggtc aacctcgcgg ggcgcgcggc ggcctccggg
      121 gcgtccgaga ggagctgcca cgtgggcggc ggggccggtg gctgcgtccc ggggttggcc
      181 tcgaggggcg ggaggagcgt ggcttgcggc cgggccggtg accagccgtg tctccctggg
      241 tccgttctgc agcggggctg cagggcacca gcgagcgcta atcctaagcc ggtagtaagt
      301 tcccttccct cggctctcct tcctcgctct ccttcctcgc ctggcctcct gcctagccag
      361 cacccctccg ggcccccagc agcggttttg gatgctgccc cttaaaccgc gtggtaaacc
      421 agttccgtcc agcgtcgctt cgcgttaaga gggtttacag gacccttagg atcggggaag
      481 cgtacctagt gggtaaccag gttcccagca ggcaccgacg tgctgcacgg tcgcgtcagc
      541 ttcacagcta ggtcccgaag cccagctgtt gggaaagcct ccccatcctt cagcccttga
      601 cattaaaaat cagacttttc cctgagagcc accgggtttc tgcgttgttg ccctccttcc
      661 ttgcccttga ttcatctccc tcgaaaggat ccccccaccc gcttactgga agcgttaggt
      721 cccttcaggg ctctctccct gttggagaga ctgcttgtgc ctgcccggga gtagagcgca
      781 gtgttaccga aatcttgcct tactcacacg acacttggca gtcttcatcg tttctcctct
      841 tttggttcag tactcacagt ggataacgtc tgtcccacct ggggaaacta agcgaaaggg
      901 aaggcacaca tgaatatcac agttgggaca gctccaaatg gaatccaact ggcatggaga
      961 ataatccagt gtggtttagg gagagttact tatattctct gagcctctct ctaagaagga
     1021 tgttagttac ctttagctca gaacgaggct tcagtgagat aatgtgtata accttcaaca
     1081 gtgtctgaaa tatattagat gatcaataag tgttctacct tcccttgccc tcttttgctg
     1141 gctccatttg ataagggaga gaggtaaagg atgacagtga tttgtagggc aggcatgtgt
     1201 agtcactggc aaaaaaatcc tatgataaag cagtaaatag atgtagtatc tgggaatgcg
     1261 cagccataca agccgaatcc aaacttccga aatagtaact taatttctta tttttttttt
     1321 tctgaagacc agagaccgtc tggggttcat gtgctgtgat ttctgattga taaatgtaaa
     1381 ttgaaattgt ctgagtttgg agatccaaag ttgaaatgtg ctttgggttg aaccagaaag
     1441 cagattgacc aaaatgtgtt tgtccactgc tattttgttg tgtttttctt ctagacccag
     1501 catgagtgaa tttccctgta aaaaacgtga tgactatttg gaatggcctg agtatttcat
     1561 ggcagtggcc ttcttatcgg cacagaggag caaagatcca aactcccagg tcggagcctg
     1621 catcgtgaat gcagaaaaca agattgtggg cattgggtac aatggaatgc caaatggatg
     1681 cagcgatgac ctcttgcctt ggaggaggac agcggagagt atactggata ccaaataccc
     1741 ttacgtgtgc cacgccgagc tgaatgccat tatgaacaaa aactcagcag atgtgaaagg
     1801 ctgtaccatg tatgtcgcct tgttcccgtg taatgaatgt gctaagctca tcatccaggc
     1861 agggataaaa gaagtcattt tcatgtctga taaataccac gacagcaatg agacaagagc
     1921 cgcgaggctc atgttggaaa tggccggggt ttccttcagg aaattcacac caaagtgcag
     1981 ccagattgtc attgactttg attcaattaa cagcagaccg agtcagacgc tccagtgact
     2041 tacatctcat taaatctcca gaagattgga ttatcctctt ctaagaagct gctaatgcct
     2101 ttcatcttga agttacacat aactttttaa tagccgggac ggcaaaagtc gacatctgaa
     2161 gaatgtaaaa gctcaaatct tcctgactcg ctctcctgtc acgtggaatc tgcatctgtt
     2221 gaaactatcg atttagggtg taaaataaag gagctgtggg tgcgcacggg gctggagcgg
     2281 gcacctcccc tcctgtcccc tgattcgctg ggacgctggt ggctgcgcag aagggcatca
     2341 gccgtgcgtc gtccactgcg tttcacagcc gttcttcaac gccacgtgtg ctgggaggac
     2401 aaacaaataa ctgtggctgt gtgcctaccg ggatgagcag acacgctgat ctgaacatcg
     2461 ggcccgaatg aagcatcaca tgtaatgccc ttggggaaag gaaaggagcc gcaagacagt
     2521 agcatttaag tgtttgcttt cgagagttga gggagccccc agccgcccag ccacccgccc
     2581 aaaagtcctg gacggggtgc gccttcgtcc tggcagatga tgagtgcaac tgagcgggcg
     2641 ttctttcccc cgctctgctg tcctgcctcc cacagggcgg tgccgcggtg tgcctctgca
     2701 cggtggggac gtctgttgtt cgtgcttctt attctggctt tgtgggttac acagagctct
     2761 tacattagtt tatttgagta atgagtcgtt ccccggggaa ggcagcccgt cgtcgccctg
     2821 cgtcaccccc aggtccacac cctgcccggg ggcggagccc cgcaccgctg ctgcacgtgc
     2881 cagcacggtt cattcccagg gctgctgtct cccgtcctgt aagtgaaatg aacgtgagga
     2941 ggtgtcagtt ccgtccagat ctcttggtga caggagctca cttgcgctcc tggtgccctg
     3001 ccttcattga cacacatctc accttcctaa tcacttcgat ttgggggatg ggtggcagtg
     3061 caccttgtct ttaatctcat ttcattttta ttaaatgtgc tcagtacctt cgttgagaaa
     3121 atggttcctt tatcctaaag atcatgacca ttttaaagtg ctcttacatc tttatgagtt
     3181 tttatattgt ttctgaggtt ttggattccg tattctgggg cacgtcattt ctgtgttgtc
     3241 tgtgaagcac acttgcacat gttttaatgc tcagagaaca gtttgaggca cggatgccat
     3301 gtgccttccc caggagattg aagatgtccg ggaaggctct cttccctctc tctctccatc
     3361 gtgccctgct cctgtctcgg gtgtggccat ctgatctgac aggtcatctc caccacccaa
     3421 taggtcccag gcctcctccc tcccataatc ctccagtctc cagtgctggc ttgtctgctg
     3481 ctttcctacc gtattctttc tctaaatctc cttttctcgc ctcaaatttt ttctctctta
     3541 tctcctccaa accccctgcc ctctgctcta aaatgcataa aacaaaaaca aaaagtatat
     3601 agacgcaaga aatcagtaaa gatatttaaa gatagaaaat acgttagatt tttgtgttgc
     3661 tgtgaatgag ttgtgagccc tttcagcaag gaatgtgtca ttgtttatgt cacattcgta
     3721 aatatgtcta ggggctactg ccctgcacag tcagccttct gtgtttacgg atttctgcat
     3781 ctgcggattc aaccaacctc acatggaaaa tgttcaggaa aaagttccag aaagttccga
     3841 aaagcaaaac tcgggtttgc cgtgcacctc acaggcagat actgcgtgtt ttacgtattg
     3901 gaggtcagtt gcagcccttc ttgaagcaag tctcccagcg ccattttttc agcagcattt
     3961 gcacacttca cgtctctgcg tcacattttg ataattctca cgatatttta aactttttct
     4021 ttactaacgt ttattatggt gatcagtgat ctttgaggtt ttaccgttgc aaaaagatta
     4081 tacgactccc tgaaggttct gatgatggtt cgcatttttt agcaataaag tatttcttga
     4141 ttaa
//
LOCUS       XM_032618409            2611 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dCMP deaminase (DCTD), transcript variant
            X4, mRNA.
ACCESSION   XM_032618409
VERSION     XM_032618409.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2611
                     /gene="DCTD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746748"
     CDS             3..551
                     /gene="DCTD"
                     /codon_start=1
                     /product="deoxycytidylate deaminase isoform X4"
                     /protein_id="XP_032474300.1"
                     /db_xref="GeneID:116746748"
                     /translation="MQMQLRGICASRAAPPRPTQFAACQQTPPARNSEPAPATSQARS
                     RGPSRFPLVLPRKKPSMSEFPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIV
                     NAENKIVGIGYNGMPNGCSDDLLPWRRTAESILDTKYPYGNSHQSAARLSLTLIQLTA
                     DRVRRSSDLHLIKSPEDWIILF"
     misc_feature    204..>428
                     /gene="DCTD"
                     /note="Deoxycytidylate deaminase [Nucleotide transport and
                     metabolism]; Region: ComEB; COG2131"
                     /db_xref="CDD:441734"
ORIGIN      
        1 ttatgcaaat gcagcttcga ggcatttgtg cctcgagggc agcgcctccc cgcccgaccc
       61 agttcgctgc ctgccaacaa acccctcccg cgaggaacag tgaacctgct ccggcgacgt
      121 cgcaggcccg ttccaggggc ccaagccgct tccccttagt cctgccccga aaaaaaccca
      181 gcatgagtga atttccctgt aaaaaacgtg atgactattt ggaatggcct gagtatttca
      241 tggcagtggc cttcttatcg gcacagagga gcaaagatcc aaactcccag gtcggagcct
      301 gcatcgtgaa tgcagaaaac aagattgtgg gcattgggta caatggaatg ccaaatggat
      361 gcagcgatga cctcttgcct tggaggagga cagcggagag tatactggat accaaatacc
      421 cttacggaaa ttcacaccaa agtgcagcca gattgtcatt gactttgatt caattaacag
      481 cagaccgagt cagacgctcc agtgacttac atctcattaa atctccagaa gattggatta
      541 tcctcttcta agaagctgct aatgcctttc atcttgaagt tacacataac tttttaatag
      601 ccgggacggc aaaagtcgac atctgaagaa tgtaaaagct caaatcttcc tgactcgctc
      661 tcctgtcacg tggaatctgc atctgttgaa actatcgatt tagggtgtaa aataaaggag
      721 ctgtgggtgc gcacggggct ggagcgggca cctcccctcc tgtcccctga ttcgctggga
      781 cgctggtggc tgcgcagaag ggcatcagcc gtgcgtcgtc cactgcgttt cacagccgtt
      841 cttcaacgcc acgtgtgctg ggaggacaaa caaataactg tggctgtgtg cctaccggga
      901 tgagcagaca cgctgatctg aacatcgggc ccgaatgaag catcacatgt aatgcccttg
      961 gggaaaggaa aggagccgca agacagtagc atttaagtgt ttgctttcga gagttgaggg
     1021 agcccccagc cgcccagcca cccgcccaaa agtcctggac ggggtgcgcc ttcgtcctgg
     1081 cagatgatga gtgcaactga gcgggcgttc tttcccccgc tctgctgtcc tgcctcccac
     1141 agggcggtgc cgcggtgtgc ctctgcacgg tggggacgtc tgttgttcgt gcttcttatt
     1201 ctggctttgt gggttacaca gagctcttac attagtttat ttgagtaatg agtcgttccc
     1261 cggggaaggc agcccgtcgt cgccctgcgt cacccccagg tccacaccct gcccgggggc
     1321 ggagccccgc accgctgctg cacgtgccag cacggttcat tcccagggct gctgtctccc
     1381 gtcctgtaag tgaaatgaac gtgaggaggt gtcagttccg tccagatctc ttggtgacag
     1441 gagctcactt gcgctcctgg tgccctgcct tcattgacac acatctcacc ttcctaatca
     1501 cttcgatttg ggggatgggt ggcagtgcac cttgtcttta atctcatttc atttttatta
     1561 aatgtgctca gtaccttcgt tgagaaaatg gttcctttat cctaaagatc atgaccattt
     1621 taaagtgctc ttacatcttt atgagttttt atattgtttc tgaggttttg gattccgtat
     1681 tctggggcac gtcatttctg tgttgtctgt gaagcacact tgcacatgtt ttaatgctca
     1741 gagaacagtt tgaggcacgg atgccatgtg ccttccccag gagattgaag atgtccggga
     1801 aggctctctt ccctctctct ctccatcgtg ccctgctcct gtctcgggtg tggccatctg
     1861 atctgacagg tcatctccac cacccaatag gtcccaggcc tcctccctcc cataatcctc
     1921 cagtctccag tgctggcttg tctgctgctt tcctaccgta ttctttctct aaatctcctt
     1981 ttctcgcctc aaattttttc tctcttatct cctccaaacc ccctgccctc tgctctaaaa
     2041 tgcataaaac aaaaacaaaa agtatataga cgcaagaaat cagtaaagat atttaaagat
     2101 agaaaatacg ttagattttt gtgttgctgt gaatgagttg tgagcccttt cagcaaggaa
     2161 tgtgtcattg tttatgtcac attcgtaaat atgtctaggg gctactgccc tgcacagtca
     2221 gccttctgtg tttacggatt tctgcatctg cggattcaac caacctcaca tggaaaatgt
     2281 tcaggaaaaa gttccagaaa gttccgaaaa gcaaaactcg ggtttgccgt gcacctcaca
     2341 ggcagatact gcgtgtttta cgtattggag gtcagttgca gcccttcttg aagcaagtct
     2401 cccagcgcca ttttttcagc agcatttgca cacttcacgt ctctgcgtca cattttgata
     2461 attctcacga tattttaaac tttttcttta ctaacgttta ttatggtgat cagtgatctt
     2521 tgaggtttta ccgttgcaaa aagattatac gactccctga aggttctgat gatggttcgc
     2581 attttttagc aataaagtat ttcttgatta a
//
LOCUS       XM_032618410            2944 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dCMP deaminase (DCTD), transcript variant
            X5, mRNA.
ACCESSION   XM_032618410
VERSION     XM_032618410.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2944
                     /gene="DCTD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746748"
     CDS             302..838
                     /gene="DCTD"
                     /codon_start=1
                     /product="deoxycytidylate deaminase isoform X1"
                     /protein_id="XP_032474301.1"
                     /db_xref="GeneID:116746748"
                     /translation="MSEFPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNA
                     ENKIVGIGYNGMPNGCSDDLLPWRRTAESILDTKYPYVCHAELNAIMNKNSADVKGCT
                     MYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSNETRAARLMLEMAGVSFRKFTPKCS
                     QIVIDFDSINSRPSQTLQ"
     misc_feature    323..775
                     /gene="DCTD"
                     /note="Deoxycytidylate deaminase [Nucleotide transport and
                     metabolism]; Region: ComEB; COG2131"
                     /db_xref="CDD:441734"
ORIGIN      
        1 ggcggccggg gcagcgggcg gccgcgggga cgccccttcc cggtccaacg tgctgccggg
       61 gaagcggcgc ggggccggcg gcgcttggtc aacctcgcgg ggcgcgcggc ggcctccggg
      121 gcgtccgaga ggagctgcca cgtgggcggc ggggccggtg gctgcgtccc ggggttggcc
      181 tcgaggggcg ggaggagcgt ggcttgcggc cgggccggtg accagccgtg tctccctggg
      241 tccgttctgc agcggggctg cagggcacca gcgagcgcta atcctaagcc ggtaacccag
      301 catgagtgaa tttccctgta aaaaacgtga tgactatttg gaatggcctg agtatttcat
      361 ggcagtggcc ttcttatcgg cacagaggag caaagatcca aactcccagg tcggagcctg
      421 catcgtgaat gcagaaaaca agattgtggg cattgggtac aatggaatgc caaatggatg
      481 cagcgatgac ctcttgcctt ggaggaggac agcggagagt atactggata ccaaataccc
      541 ttacgtgtgc cacgccgagc tgaatgccat tatgaacaaa aactcagcag atgtgaaagg
      601 ctgtaccatg tatgtcgcct tgttcccgtg taatgaatgt gctaagctca tcatccaggc
      661 agggataaaa gaagtcattt tcatgtctga taaataccac gacagcaatg agacaagagc
      721 cgcgaggctc atgttggaaa tggccggggt ttccttcagg aaattcacac caaagtgcag
      781 ccagattgtc attgactttg attcaattaa cagcagaccg agtcagacgc tccagtgact
      841 tacatctcat taaatctcca gaagattgga ttatcctctt ctaagaagct gctaatgcct
      901 ttcatcttga agttacacat aactttttaa tagccgggac ggcaaaagtc gacatctgaa
      961 gaatgtaaaa gctcaaatct tcctgactcg ctctcctgtc acgtggaatc tgcatctgtt
     1021 gaaactatcg atttagggtg taaaataaag gagctgtggg tgcgcacggg gctggagcgg
     1081 gcacctcccc tcctgtcccc tgattcgctg ggacgctggt ggctgcgcag aagggcatca
     1141 gccgtgcgtc gtccactgcg tttcacagcc gttcttcaac gccacgtgtg ctgggaggac
     1201 aaacaaataa ctgtggctgt gtgcctaccg ggatgagcag acacgctgat ctgaacatcg
     1261 ggcccgaatg aagcatcaca tgtaatgccc ttggggaaag gaaaggagcc gcaagacagt
     1321 agcatttaag tgtttgcttt cgagagttga gggagccccc agccgcccag ccacccgccc
     1381 aaaagtcctg gacggggtgc gccttcgtcc tggcagatga tgagtgcaac tgagcgggcg
     1441 ttctttcccc cgctctgctg tcctgcctcc cacagggcgg tgccgcggtg tgcctctgca
     1501 cggtggggac gtctgttgtt cgtgcttctt attctggctt tgtgggttac acagagctct
     1561 tacattagtt tatttgagta atgagtcgtt ccccggggaa ggcagcccgt cgtcgccctg
     1621 cgtcaccccc aggtccacac cctgcccggg ggcggagccc cgcaccgctg ctgcacgtgc
     1681 cagcacggtt cattcccagg gctgctgtct cccgtcctgt aagtgaaatg aacgtgagga
     1741 ggtgtcagtt ccgtccagat ctcttggtga caggagctca cttgcgctcc tggtgccctg
     1801 ccttcattga cacacatctc accttcctaa tcacttcgat ttgggggatg ggtggcagtg
     1861 caccttgtct ttaatctcat ttcattttta ttaaatgtgc tcagtacctt cgttgagaaa
     1921 atggttcctt tatcctaaag atcatgacca ttttaaagtg ctcttacatc tttatgagtt
     1981 tttatattgt ttctgaggtt ttggattccg tattctgggg cacgtcattt ctgtgttgtc
     2041 tgtgaagcac acttgcacat gttttaatgc tcagagaaca gtttgaggca cggatgccat
     2101 gtgccttccc caggagattg aagatgtccg ggaaggctct cttccctctc tctctccatc
     2161 gtgccctgct cctgtctcgg gtgtggccat ctgatctgac aggtcatctc caccacccaa
     2221 taggtcccag gcctcctccc tcccataatc ctccagtctc cagtgctggc ttgtctgctg
     2281 ctttcctacc gtattctttc tctaaatctc cttttctcgc ctcaaatttt ttctctctta
     2341 tctcctccaa accccctgcc ctctgctcta aaatgcataa aacaaaaaca aaaagtatat
     2401 agacgcaaga aatcagtaaa gatatttaaa gatagaaaat acgttagatt tttgtgttgc
     2461 tgtgaatgag ttgtgagccc tttcagcaag gaatgtgtca ttgtttatgt cacattcgta
     2521 aatatgtcta ggggctactg ccctgcacag tcagccttct gtgtttacgg atttctgcat
     2581 ctgcggattc aaccaacctc acatggaaaa tgttcaggaa aaagttccag aaagttccga
     2641 aaagcaaaac tcgggtttgc cgtgcacctc acaggcagat actgcgtgtt ttacgtattg
     2701 gaggtcagtt gcagcccttc ttgaagcaag tctcccagcg ccattttttc agcagcattt
     2761 gcacacttca cgtctctgcg tcacattttg ataattctca cgatatttta aactttttct
     2821 ttactaacgt ttattatggt gatcagtgat ctttgaggtt ttaccgttgc aaaaagatta
     2881 tacgactccc tgaaggttct gatgatggtt cgcatttttt agcaataaag tatttcttga
     2941 ttaa
//
LOCUS       XM_032618411            2741 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dCMP deaminase (DCTD), transcript variant
            X6, mRNA.
ACCESSION   XM_032618411
VERSION     XM_032618411.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2741
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2741
                     /gene="DCTD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746748"
     CDS             99..635
                     /gene="DCTD"
                     /codon_start=1
                     /product="deoxycytidylate deaminase isoform X1"
                     /protein_id="XP_032474302.1"
                     /db_xref="GeneID:116746748"
                     /translation="MSEFPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNA
                     ENKIVGIGYNGMPNGCSDDLLPWRRTAESILDTKYPYVCHAELNAIMNKNSADVKGCT
                     MYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSNETRAARLMLEMAGVSFRKFTPKCS
                     QIVIDFDSINSRPSQTLQ"
     misc_feature    120..572
                     /gene="DCTD"
                     /note="Deoxycytidylate deaminase [Nucleotide transport and
                     metabolism]; Region: ComEB; COG2131"
                     /db_xref="CDD:441734"
ORIGIN      
        1 gaaactgcag cggttacgaa gaagtcggag gcctgggcgc ggccacgagc cgtgccgtcc
       61 gaggacccgg agcggcgggg cgaccgtgca gacccagcat gagtgaattt ccctgtaaaa
      121 aacgtgatga ctatttggaa tggcctgagt atttcatggc agtggccttc ttatcggcac
      181 agaggagcaa agatccaaac tcccaggtcg gagcctgcat cgtgaatgca gaaaacaaga
      241 ttgtgggcat tgggtacaat ggaatgccaa atggatgcag cgatgacctc ttgccttgga
      301 ggaggacagc ggagagtata ctggatacca aataccctta cgtgtgccac gccgagctga
      361 atgccattat gaacaaaaac tcagcagatg tgaaaggctg taccatgtat gtcgccttgt
      421 tcccgtgtaa tgaatgtgct aagctcatca tccaggcagg gataaaagaa gtcattttca
      481 tgtctgataa ataccacgac agcaatgaga caagagccgc gaggctcatg ttggaaatgg
      541 ccggggtttc cttcaggaaa ttcacaccaa agtgcagcca gattgtcatt gactttgatt
      601 caattaacag cagaccgagt cagacgctcc agtgacttac atctcattaa atctccagaa
      661 gattggatta tcctcttcta agaagctgct aatgcctttc atcttgaagt tacacataac
      721 tttttaatag ccgggacggc aaaagtcgac atctgaagaa tgtaaaagct caaatcttcc
      781 tgactcgctc tcctgtcacg tggaatctgc atctgttgaa actatcgatt tagggtgtaa
      841 aataaaggag ctgtgggtgc gcacggggct ggagcgggca cctcccctcc tgtcccctga
      901 ttcgctggga cgctggtggc tgcgcagaag ggcatcagcc gtgcgtcgtc cactgcgttt
      961 cacagccgtt cttcaacgcc acgtgtgctg ggaggacaaa caaataactg tggctgtgtg
     1021 cctaccggga tgagcagaca cgctgatctg aacatcgggc ccgaatgaag catcacatgt
     1081 aatgcccttg gggaaaggaa aggagccgca agacagtagc atttaagtgt ttgctttcga
     1141 gagttgaggg agcccccagc cgcccagcca cccgcccaaa agtcctggac ggggtgcgcc
     1201 ttcgtcctgg cagatgatga gtgcaactga gcgggcgttc tttcccccgc tctgctgtcc
     1261 tgcctcccac agggcggtgc cgcggtgtgc ctctgcacgg tggggacgtc tgttgttcgt
     1321 gcttcttatt ctggctttgt gggttacaca gagctcttac attagtttat ttgagtaatg
     1381 agtcgttccc cggggaaggc agcccgtcgt cgccctgcgt cacccccagg tccacaccct
     1441 gcccgggggc ggagccccgc accgctgctg cacgtgccag cacggttcat tcccagggct
     1501 gctgtctccc gtcctgtaag tgaaatgaac gtgaggaggt gtcagttccg tccagatctc
     1561 ttggtgacag gagctcactt gcgctcctgg tgccctgcct tcattgacac acatctcacc
     1621 ttcctaatca cttcgatttg ggggatgggt ggcagtgcac cttgtcttta atctcatttc
     1681 atttttatta aatgtgctca gtaccttcgt tgagaaaatg gttcctttat cctaaagatc
     1741 atgaccattt taaagtgctc ttacatcttt atgagttttt atattgtttc tgaggttttg
     1801 gattccgtat tctggggcac gtcatttctg tgttgtctgt gaagcacact tgcacatgtt
     1861 ttaatgctca gagaacagtt tgaggcacgg atgccatgtg ccttccccag gagattgaag
     1921 atgtccggga aggctctctt ccctctctct ctccatcgtg ccctgctcct gtctcgggtg
     1981 tggccatctg atctgacagg tcatctccac cacccaatag gtcccaggcc tcctccctcc
     2041 cataatcctc cagtctccag tgctggcttg tctgctgctt tcctaccgta ttctttctct
     2101 aaatctcctt ttctcgcctc aaattttttc tctcttatct cctccaaacc ccctgccctc
     2161 tgctctaaaa tgcataaaac aaaaacaaaa agtatataga cgcaagaaat cagtaaagat
     2221 atttaaagat agaaaatacg ttagattttt gtgttgctgt gaatgagttg tgagcccttt
     2281 cagcaaggaa tgtgtcattg tttatgtcac attcgtaaat atgtctaggg gctactgccc
     2341 tgcacagtca gccttctgtg tttacggatt tctgcatctg cggattcaac caacctcaca
     2401 tggaaaatgt tcaggaaaaa gttccagaaa gttccgaaaa gcaaaactcg ggtttgccgt
     2461 gcacctcaca ggcagatact gcgtgtttta cgtattggag gtcagttgca gcccttcttg
     2521 aagcaagtct cccagcgcca ttttttcagc agcatttgca cacttcacgt ctctgcgtca
     2581 cattttgata attctcacga tattttaaac tttttcttta ctaacgttta ttatggtgat
     2641 cagtgatctt tgaggtttta ccgttgcaaa aagattatac gactccctga aggttctgat
     2701 gatggttcgc attttttagc aataaagtat ttcttgatta a
//
LOCUS       XM_032618412            2719 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dCMP deaminase (DCTD), transcript variant
            X7, mRNA.
ACCESSION   XM_032618412
VERSION     XM_032618412.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2719
                     /gene="DCTD"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746748"
     CDS             77..613
                     /gene="DCTD"
                     /codon_start=1
                     /product="deoxycytidylate deaminase isoform X1"
                     /protein_id="XP_032474303.1"
                     /db_xref="GeneID:116746748"
                     /translation="MSEFPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNA
                     ENKIVGIGYNGMPNGCSDDLLPWRRTAESILDTKYPYVCHAELNAIMNKNSADVKGCT
                     MYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSNETRAARLMLEMAGVSFRKFTPKCS
                     QIVIDFDSINSRPSQTLQ"
     misc_feature    98..550
                     /gene="DCTD"
                     /note="Deoxycytidylate deaminase [Nucleotide transport and
                     metabolism]; Region: ComEB; COG2131"
                     /db_xref="CDD:441734"
ORIGIN      
        1 tctgccgact tccttcccgg gcgggacggc gggacagcgg cggcggcggg gacgggcgcc
       61 ggcctgcaga cccagcatga gtgaatttcc ctgtaaaaaa cgtgatgact atttggaatg
      121 gcctgagtat ttcatggcag tggccttctt atcggcacag aggagcaaag atccaaactc
      181 ccaggtcgga gcctgcatcg tgaatgcaga aaacaagatt gtgggcattg ggtacaatgg
      241 aatgccaaat ggatgcagcg atgacctctt gccttggagg aggacagcgg agagtatact
      301 ggataccaaa tacccttacg tgtgccacgc cgagctgaat gccattatga acaaaaactc
      361 agcagatgtg aaaggctgta ccatgtatgt cgccttgttc ccgtgtaatg aatgtgctaa
      421 gctcatcatc caggcaggga taaaagaagt cattttcatg tctgataaat accacgacag
      481 caatgagaca agagccgcga ggctcatgtt ggaaatggcc ggggtttcct tcaggaaatt
      541 cacaccaaag tgcagccaga ttgtcattga ctttgattca attaacagca gaccgagtca
      601 gacgctccag tgacttacat ctcattaaat ctccagaaga ttggattatc ctcttctaag
      661 aagctgctaa tgcctttcat cttgaagtta cacataactt tttaatagcc gggacggcaa
      721 aagtcgacat ctgaagaatg taaaagctca aatcttcctg actcgctctc ctgtcacgtg
      781 gaatctgcat ctgttgaaac tatcgattta gggtgtaaaa taaaggagct gtgggtgcgc
      841 acggggctgg agcgggcacc tcccctcctg tcccctgatt cgctgggacg ctggtggctg
      901 cgcagaaggg catcagccgt gcgtcgtcca ctgcgtttca cagccgttct tcaacgccac
      961 gtgtgctggg aggacaaaca aataactgtg gctgtgtgcc taccgggatg agcagacacg
     1021 ctgatctgaa catcgggccc gaatgaagca tcacatgtaa tgcccttggg gaaaggaaag
     1081 gagccgcaag acagtagcat ttaagtgttt gctttcgaga gttgagggag cccccagccg
     1141 cccagccacc cgcccaaaag tcctggacgg ggtgcgcctt cgtcctggca gatgatgagt
     1201 gcaactgagc gggcgttctt tcccccgctc tgctgtcctg cctcccacag ggcggtgccg
     1261 cggtgtgcct ctgcacggtg gggacgtctg ttgttcgtgc ttcttattct ggctttgtgg
     1321 gttacacaga gctcttacat tagtttattt gagtaatgag tcgttccccg gggaaggcag
     1381 cccgtcgtcg ccctgcgtca cccccaggtc cacaccctgc ccgggggcgg agccccgcac
     1441 cgctgctgca cgtgccagca cggttcattc ccagggctgc tgtctcccgt cctgtaagtg
     1501 aaatgaacgt gaggaggtgt cagttccgtc cagatctctt ggtgacagga gctcacttgc
     1561 gctcctggtg ccctgccttc attgacacac atctcacctt cctaatcact tcgatttggg
     1621 ggatgggtgg cagtgcacct tgtctttaat ctcatttcat ttttattaaa tgtgctcagt
     1681 accttcgttg agaaaatggt tcctttatcc taaagatcat gaccatttta aagtgctctt
     1741 acatctttat gagtttttat attgtttctg aggttttgga ttccgtattc tggggcacgt
     1801 catttctgtg ttgtctgtga agcacacttg cacatgtttt aatgctcaga gaacagtttg
     1861 aggcacggat gccatgtgcc ttccccagga gattgaagat gtccgggaag gctctcttcc
     1921 ctctctctct ccatcgtgcc ctgctcctgt ctcgggtgtg gccatctgat ctgacaggtc
     1981 atctccacca cccaataggt cccaggcctc ctccctccca taatcctcca gtctccagtg
     2041 ctggcttgtc tgctgctttc ctaccgtatt ctttctctaa atctcctttt ctcgcctcaa
     2101 attttttctc tcttatctcc tccaaacccc ctgccctctg ctctaaaatg cataaaacaa
     2161 aaacaaaaag tatatagacg caagaaatca gtaaagatat ttaaagatag aaaatacgtt
     2221 agatttttgt gttgctgtga atgagttgtg agccctttca gcaaggaatg tgtcattgtt
     2281 tatgtcacat tcgtaaatat gtctaggggc tactgccctg cacagtcagc cttctgtgtt
     2341 tacggatttc tgcatctgcg gattcaacca acctcacatg gaaaatgttc aggaaaaagt
     2401 tccagaaagt tccgaaaagc aaaactcggg tttgccgtgc acctcacagg cagatactgc
     2461 gtgttttacg tattggaggt cagttgcagc ccttcttgaa gcaagtctcc cagcgccatt
     2521 ttttcagcag catttgcaca cttcacgtct ctgcgtcaca ttttgataat tctcacgata
     2581 ttttaaactt tttctttact aacgtttatt atggtgatca gtgatctttg aggttttacc
     2641 gttgcaaaaa gattatacga ctccctgaag gttctgatga tggttcgcat tttttagcaa
     2701 taaagtattt cttgattaa
//
LOCUS       XM_032618413           12041 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus hook microtubule tethering protein 3
            (HOOK3), mRNA.
ACCESSION   XM_032618413
VERSION     XM_032618413.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-197               VOSU01000013.1     33959794-33959990
            198-283             VOSU01000013.1     33968605-33968690
            284-356             VOSU01000013.1     33996512-33996584
            357-407             VOSU01000013.1     33999476-33999526
            408-540             VOSU01000013.1     34001099-34001231
            541-608             VOSU01000013.1     34004524-34004591
            609-671             VOSU01000013.1     34011683-34011745
            672-755             VOSU01000013.1     34013022-34013105
            756-919             VOSU01000013.1     34019648-34019811
            920-1060            VOSU01000013.1     34024060-34024200
            1061-1262           VOSU01000013.1     34025788-34025989
            1263-1373           VOSU01000013.1     34030348-34030458
            1374-1461           VOSU01000013.1     34031197-34031284
            1462-1531           VOSU01000013.1     34037494-34037563
            1532-1562           VOSU01000013.1     34040220-34040250
            1563-1601           VOSU01000013.1     34040252-34040290
            1602-1652           VOSU01000013.1     34040292-34040342
            1653-1653           "N"                1-1
            1654-1672           VOSU01000013.1     34040343-34040361
            1673-1760           VOSU01000013.1     34044723-34044810
            1761-1795           VOSU01000013.1     34049509-34049543
            1796-1878           VOSU01000013.1     34053792-34053874
            1879-1979           VOSU01000013.1     34054958-34055058
            1980-2084           VOSU01000013.1     34056305-34056409
            2085-2156           VOSU01000013.1     34057247-34057318
            2157-12041          VOSU01000013.1     34059951-34069835
FEATURES             Location/Qualifiers
     source          1..12041
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..12041
                     /gene="HOOK3"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 51
                     long SRA reads, 8 Proteins, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:116746749"
     CDS             141..2297
                     /gene="HOOK3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein Hook homolog 3"
                     /protein_id="XP_032474304.1"
                     /db_xref="GeneID:116746749"
                     /translation="MFNVESLERVELCESLLTWIQTFNVDAPCQTVEDLTNGVVMAQV
                     LQKIDPAYFDENWLNRIKTEVGDNWRLKISNLKKILKGILDYNHEILGQQINDFTLPD
                     VNLIGEHSDAAELGRMLQLILGCAVNCEQKQEYIQAIMMMEESVQHVVMTAIQELMSK
                     ESPVSAGNDAYVDLDRQLKKTSEELNEALSAKEEIAQRCHELDLQVAALQEEKSSLLA
                     ENQVLMERLNQSDSIEDPNSPAGRRHLQLQTQLEQLQEETFRLEAAKDDYRIRCEELQ
                     KEMSELRQQNDELTTLADDAQSLKDEIDVLRHSSDKVSKLEGQVESYKKKLEDLGDLR
                     RQVKLLEEKNTMYMQNTVSLEEELRKANAARSQLETYKRQVVELQNRLSEESKKADKL
                     DFEYKRLKEKVDSLQKEKDRLRTERDSLKETIEELRCVQAQEGQLTTQGLMPLGSQES
                     SDSLAAEIVTPEIREKLIRLQHENKMLKINQEGSDNEKIALLQSLLDDATLRKNXLET
                     ENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKKKLEEHLEKLHEANNELQKKR
                     AIIEDLEPRFNNSSLKIEELQEALRKKEEEMKQMEERYKKYLEKAKSVIRTLDPKQNQ
                     GAAPEIQALKNQLHERDRQFHSLEKEYEKTKSQREMEEKYIVSAWYNMGMTLHKKAAE
                     DRLASTGSGQSFLARQRQATSTRRSYPGHVQPATAR"
     misc_feature    162..620
                     /gene="HOOK3"
                     /note="Hook domain found in protein Hook 3 (Hook3) and
                     similar proteins; Region: HkD_Hook3; cd22226"
                     /db_xref="CDD:411797"
     misc_feature    order(420..422,519..521,537..539,546..551,555..560,
                     570..572,579..584,588..593,600..605,612..614)
                     /gene="HOOK3"
                     /note="LIC-binding interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:411797"
     misc_feature    690..2267
                     /gene="HOOK3"
                     /note="HOOK protein coiled-coil region; Region: HOOK;
                     pfam05622"
                     /db_xref="CDD:461694"
ORIGIN      
        1 tgacgctgcg ggtgccgctg ccagctccgg acggagtcgg cggccgggcg gaggacgggc
       61 aggccgaccc tcggacgcag ccccgggccg agccgcgggc ttcctggcga ggcagggcgg
      121 ccgcgagccc gggcgggaag atgttcaacg tggagtccct ggagcgggtg gagctgtgcg
      181 agagcctcct cacttggatc cagacattta atgtggatgc accatgccag accgtggaag
      241 atttaacgaa tggggttgtg atggcccagg ttctccaaaa gatagatcct gcatattttg
      301 atgaaaattg gctaaacaga attaaaactg aagtgggaga taattggagg ctaaagataa
      361 gcaatttaaa gaaaattttg aaaggaatcc tggattacaa tcatgagatt ttagggcagc
      421 aaattaatga ctttactctc cctgacgtga accttattgg ggagcattct gatgccgcag
      481 agctgggaag gatgctccaa ctcattttag gctgtgctgt gaactgtgaa cagaagcaag
      541 agtacatcca agccatcatg atgatggagg aatcagtgca acacgttgtc atgacagcca
      601 tccaggagct gatgagtaaa gagtctcctg tctctgctgg gaacgatgcc tatgttgacc
      661 tcgatcgcca gctgaagaaa acttcagagg aactgaatga agctttgtcg gccaaggaag
      721 aaattgctca aaggtgccat gagttggatc tgcaggttgc agcattgcaa gaggagaaaa
      781 gtagtctgtt ggcagagaat caggtattaa tggaaaggct gaatcagtct gattctatag
      841 aagatcctaa cagtccagca ggaagaaggc atctgcagct ccagactcag ttagaacagc
      901 tccaagaaga aacattcaga cttgaagcag ccaaagatga ctatcgaata cgctgtgaag
      961 agttacaaaa ggagatgtct gaacttcggc aacagaacga tgaactgacc actttggcag
     1021 atgacgctca gtctctaaaa gatgaaatag atgttcttag acattcttct gataaagtgt
     1081 ctaaactaga aggccaagtg gaatcatata aaaagaagct agaagatctt ggtgatttga
     1141 ggcgtcaggt taaactctta gaagagaaga atactatgta tatgcagaac acagttagcc
     1201 tagaggagga gctgagaaaa gccaacgcgg ctcgaagtca actcgagacg tataagagac
     1261 aggtagtaga actgcaaaat agattatctg aagaatcgaa gaaagcagat aaattagatt
     1321 ttgaatataa gcggctaaaa gaaaaagttg acagtcttca aaaagaaaag gataggttaa
     1381 gaacagaaag ggattctctg aaggaaacca tcgaagagct tcgttgtgtt caggctcagg
     1441 aagggcaact cacaacccaa gggttaatgc ctctgggaag tcaggaatct tcagatagtc
     1501 tggcagcaga gatcgtcaca cctgaaatca gggagaaact tattcgtctt cagcatgaga
     1561 ataagatgtt aaaaattaac caagagggtt cagacaatga aaaaatcgcc ttattgcaga
     1621 gccttctaga tgatgccacg ctacgcaaga atngactgga gacagagaac aggctggtga
     1681 atcaaagact tctagaagta cagtcacaag tcgaagaatt gcaaaaatct ttacaggatc
     1741 aaggctcaaa ggcagaagat tcagttcttc taaaaaagaa gcttgaagaa catctagaga
     1801 agctgcatga ggccaataat gagctgcaga agaagagagc catcatcgag gaccttgagc
     1861 cgagatttaa caacagctcc ttaaaaattg aagaattaca agaagcttta cggaagaaag
     1921 aagaggaaat gaagcaaatg gaagaaagat ataaaaaata cttagagaaa gccaaaagtg
     1981 ttatccgtac tttagatcct aaacaaaatc aaggagcagc accagaaata caagctctta
     2041 aaaatcagct ccacgaacgg gatcggcaat tccattcatt ggagaaagaa tatgagaaaa
     2101 caaagagtca aagagagatg gaggagaaat atattgttag tgcctggtac aatatgggaa
     2161 tgactctgca taaaaaggcg gcagaagaca gacttgctag tacaggttcg gggcagtcat
     2221 tcctggcgag gcagagacaa gccaccagca cgagaaggtc ttacccgggc cacgtccagc
     2281 cagccacagc aaggtagaca agtcctgcca ttagaataaa aaacaccccg cattcaaagc
     2341 atacttctgt tacatataac atttcaggaa attcagccag cttatatttt gtctgtattt
     2401 catgtattta attgtttctt atttgaggac tttctctctt ctgtatctat aatgttttag
     2461 tttcttggtc ctttattttg tagtcctttt ggttcctttt aatgtgccaa aaaatttttt
     2521 aatgcccaat taaaagtgtt gtatattagt gtagtacttt tctttgtatg aaaatgtcct
     2581 ttccccaatg gtgtaggctt tgtaatgaat tagattttct gccaataatt gatatacaat
     2641 ttatattctt tattgtgcct ctgtgttacc atgctttcta agaatgtctt tgtttaaagg
     2701 gaattaatct ttttatgatg tattaatctg tgttttcaat tgtttttcaa atgcacttca
     2761 aataacttgc atacttacta tgtaaaatgg ttggcaagtg cactttttgc aaagacataa
     2821 atacattggc agaggtgcta atcagatctt acctaaggca cctgatagaa ctatttagag
     2881 ggaaaaactg agttttcaca ttgttttata ggaaattaaa tttgtccaaa gatttggaaa
     2941 ctatttttaa aacataaata gaatttcatt atttcctact atcttatttg ctggcagaag
     3001 tgaatgcact ggttaggtta tttggggaga agttacagaa gaaacaaaat caggaagttt
     3061 gttcattttt cttctttttt tggaatatca cagtaactga ggatcagatt ctagcaatgg
     3121 gctgacattt cgttgcaact gccctccaca tataaaagta tataaaagat gtatttttta
     3181 tatacttatg agtcataggt ggccttacct ttggggtaat ttccttgttg acttgcacct
     3241 catttgtctt acttattcct taacataaaa cctgctattt ctcaataatt cctaatactt
     3301 aacatcttag tatcagtcgt taggatcaat aagtgacttt ttgtgtctga tgttatgaca
     3361 ggtggctgtc atattttttc ttaattctat gtactagtct aagggtttgc tactgagtag
     3421 attctcttgg gtatttggtt gccccaaagt gcttacattt gttgacagat tataaactat
     3481 gtttttttac attgatgaat ggctgtcaag taataatgat tgtaaagcac tttgactata
     3541 taaggtgcta tataaatgca aaatgtcatt catttgaaca tgaaatgtct ctgcctaact
     3601 ttccatattg gccccaaatt atatttcagt tcccctccag cctttttctt gcaccatagc
     3661 ccatagccca gtaaagcaaa aatttactga aactaggtcg attatttgtt ttcggttttg
     3721 gataggtcac ctattaagaa gattttattt catatacttg ctatttagaa gttcaggttt
     3781 catttagttt tgtgtattaa atacaaatga gcaactttaa atcaagctaa acataatcaa
     3841 gaattttcag aaactatatt ccagtgtttg attttaaatc cttatttcct ttttttttat
     3901 aagaaattga cctaaagact attttaggtg ttttcatttg tcctcagaaa ctgtacttga
     3961 agaaaggtat tagaatatac acagaaatga ctccatgcat tgtgctaatt ttttacatta
     4021 agtacagaag tctgagctca gtgtgagtgc ttctgcctgg taagaagaaa agcaggaaga
     4081 cttagtagta atggagagaa ccagcgagtg gaatgcatcg tggggtttca ggagggcaag
     4141 cagacctaat caacatagaa agttttgaca atgaaagatt aaaaatgatt taagatgggt
     4201 aaccctcccc cacctccacc cttccccgtc cctttatttc acaaatcaga gtaaggatcc
     4261 aacagtttta aaacagggca tgaacactca ccttggtaaa attaaaatta ttgggaaata
     4321 tagctgcaaa ataagataga tgaaaatcag agtccatgag ctgtttgtta aatggattat
     4381 atcccatgag aggagaggtt ttaattttag ttctctattt actgtcccag tcctggtctc
     4441 ctacccaccc tcctgctcag atatgtttct ctaaatggga gaggaaagtg ccaagctttt
     4501 agaaggaagt tttccgtctt atttttcttc agcatgccat tattttggtg cttatgttcg
     4561 taagtttcac tcacctttac agtatgttta aattttagta tattgctttc gttccatagc
     4621 agaaacttta tttctaaaca ttctgtgatg ttttcttaaa agtcaggaat agaactttgc
     4681 tgtcccagtg aggaccccat ttcctttgct cagctttgga caggattttt acatttctct
     4741 ttctctggcg atgacgctgg gcacactgtg gagtcagcac agagttagtg cgctaaggtt
     4801 ggggttgagc catcaccccc tgtctgagtt cttgtgaaca aaaagcttat tttctgtttt
     4861 ccctctaacc agggtgagaa aatacagagt taataactaa agactacaaa agcatgaaat
     4921 ttatattctg cagtgtgtat ttaagaagtt tgtaaagggg aaaaaaaaat ccagcaaata
     4981 tgcttaccgc atcttaaaaa gagagtaaat aatacagctg tacgtatctt taaaaaactt
     5041 gcagaaaccc gatcatacct tttttagtat ttgtctgatt atttagtaat aaccaagaaa
     5101 aagaagtacc aaaacaaagg ctccattttc taaaattgat cagcattgaa ttatttctgt
     5161 ttgatggccc agcctggtaa aattggctaa cgagatgatt cattataata aggataatac
     5221 tgtccactgt tattttgttg cggtcttact gctttgtctg tatgataaaa gctcagttgt
     5281 acaaacttga gctaaatgtt tccagtcaga aacatcagcc catatatatc agcagtcttc
     5341 agcaaggcat gaaaactggt gctgtgcaaa caaaccagca gtaagcgatt gtgaggggaa
     5401 ggaggattta ggttgaagaa aaggtacatt ttatttttga gctattttac tcacacttcc
     5461 ttttcaactg cagttttatt tattcatatc taatgatatg aaatattttg tagcgtctct
     5521 tgtgctccga caagcattca tcttttaaag ataacactgt gttgaaaact tgaaaatctt
     5581 tattctgata taagaatcta cttgaaataa aattctaaat ttttgaattt atcctagctc
     5641 cctgcattta atctccagtg gtccagatct cagactccag aagtgttaca cttttcccca
     5701 gttggaacac atgaggttta tctgaaaaag catccacaac ccacagatag tgtaaaccta
     5761 gttagtttac agctactggg ataagaacct gtgatcctaa agggagagga aggtgcttgg
     5821 catcttgctt tttgctaggg gcagaataac aacatgcttc ttgttgtctg ttcattaaac
     5881 tatgggagca tgttttgact ttttatcctt atattacaaa gtgactcttg gcctagaaat
     5941 ggctgtcgaa ctgatgcagg attgtactcc ttaacagtga gtaggagtcc tacccttaca
     6001 gggtaggaag gactgaacag aacaaaataa gatgggatct cagaatcttt gaaaattact
     6061 ttagcatgtt ttaaaatttt tcccttttta tatgttaaaa gggtttttcc gttcaataat
     6121 gataatctct tttcctatag tcccaactgt caaaatggca gcttatttta gtagatgtgc
     6181 aacccagttt cactacattt agaaagcaat ttcagagtta attctttgta actataatga
     6241 ttcgaatatt ttgtatcatg aagtttttat atgagggagg ccattctcaa tgtatctgtc
     6301 atccagtttt ttactttgta taaagcatat ttaaataata attggtatat gtttatttta
     6361 tggaaaaatt tgaaaatatt ttagtgtcca atttaagcaa gataatttta ttgttctaaa
     6421 gttgtgcaat aaatactgtt tctttctcag aagcctaaaa aacataaaat aatttgctac
     6481 cgaaacagct gatttctgcc cctccccatc cccctaaatc acagaagtat caatatttat
     6541 ctcccttttt ataaaatgaa ggacagcaca aatatgatga catccatctc ttttaaatca
     6601 ctgattatgt tcttggaaaa tacgtactca taattttgtt tttaaacagc cttttatcaa
     6661 tccaattccc atgtatttat aaatataaaa actttaaaac ttatatttaa tgttatcttg
     6721 aagtatgctt gaattcttca cactgcactt aaaatgatag agaaagggac attagtttat
     6781 ttgagaaata agagacccga agctaattat ggcaagtatg tgagttttag tagttgtggt
     6841 ctatggatgt ttcctaacaa ttctatttca gcaattaacg tctctcttca gtatttttct
     6901 gctttctaac attttccaat aatattctgt gagataggtt tgtatgctgt atataagtga
     6961 acatagaaat cggaaagtaa ccgaaggctg tcaaggcaga tccattccta gtgagtagaa
     7021 tcgattatcg gaaaaagaag aggcctaatt ttgaacaaat atccaggcag atagaagtgc
     7081 taacactatt aaacctatac ttgtcttaac aaatgttcct aaggtaatag tttacataaa
     7141 atctcctgat tttattacat gatcattcaa taaaaaagag cagacaaaaa ataatttata
     7201 ttctaattgt ccttcccttc agtggacatt aactgggcac acagtattaa ctgtacatgt
     7261 ttatgagtgg aggggaaagc atctattttc attttgaaac tgttaaccca ttactaaatc
     7321 taagatagtg atttaaagcc atgaggatag gatgatctga tgagatggga agaaatctgt
     7381 ggtggctgaa actcactacc aacttcctag cagctatcta ggtccgctgc tgtgtctggt
     7441 ttgcaaacca tgtctccctt aattatacgt agtagcccca cagaaaattt tgtttaaaat
     7501 gaagacaagg gcttccctgg tggcgcagtg gttgagaatc tgcctgctaa tgcaggggac
     7561 acgggttcga gccctggtct gggaggatcc cacatgccgc ggagcacctg ggtccgtgag
     7621 tcacaactac tgagcctgca cgtctggagc ctgtgctccg caacaagaga ggccacgata
     7681 gaggcccgtg caccgcgatg aagagtggcc cccgcttgcc acaactagag atagccctcg
     7741 cacagaaacc aagacccaac acagcaaaaa taaattaatt aattaataaa ctcctacccc
     7801 caacatcttc tttaaaaaaa aaaaaatgaa gacaagagta gactttatgt gtgtgtgtgt
     7861 gtatattcaa ggagagcctt tatataccta atacattact gccaggctct gaattagatg
     7921 tttagggtct gcagatgaaa tcatcagaga aggtgtccat accctcaaaa tttaaggaca
     7981 atggggctat caaatatcct aaattatatt gactcagagc ttaaaagaat aattaaatat
     8041 cacgagaaga gcaatctcaa agtgagaaaa agaaaattac caaagcatgc tgagtcttta
     8101 atgtgcgtgg gagacttctg cgcaggcatc gttgccttag agatctctaa attgacaaag
     8161 gaaaataatt tgattagcat tgatattgta aaagttataa aaggaactca tgtttattct
     8221 cggtgtattt gtcaacctat ggacagtgat tactgtatat acaatctata gtgtgtttat
     8281 tttatagatg tcactattag agatgaatgt cttaatatta tttactactt ctagtcactt
     8341 atgtattatt tatactttac tgcaagattc acagcacttt actaatatta gataattatt
     8401 ttctttctac ctttctgtgg cattttctac ttacatcttt tccactgggg ttcttctcct
     8461 tattttggaa cactcactaa gaaaaatgta aaagattgcc caaataaata ggctatgtac
     8521 tgttcctgaa atgtttaaag tcagatctga agttctaagt ctagaactct ctttgaagct
     8581 gggttggggc tgctaggcat gaattacatt ttatatttca cattaataag actcataagt
     8641 tagtactcat gaagccaagt tctctcaaat gcagacacac ttaaaacttt ttgttgaaaa
     8701 cagaagttgc attaatacaa agtaaacagt cttctggtta atcagaagat gctcttacct
     8761 gccatttacc tgtctcctaa aatacaaatc tgcaaactgt ccttcacttt catagtttct
     8821 tcaacattgc atgtactcaa acacaggaga aacaaagcca ggttccagga gctgtgaagt
     8881 ccaagaatct ggaaaatggt gggggtgagg tgatgggaaa aggcagacac taacaagggc
     8941 aggatgctac aaaaatagtc tgagttctac tataacgtat gctttatgaa cttggccgtt
     9001 ttcttaagtt caaatatagc agagttttca gctgattctt ttaagagatg ctttgaggag
     9061 tcaggactct tccgcttgta cttgagtata tctgtattcc aaccctagtc aaaagagagt
     9121 gagatatttg ttgttacata aacactgaca cagatgattg ctgccaaaga atagggagat
     9181 ttgctcataa gaactttctc ttaaagtttt ttattttgcg tttctggatg agagaaatgc
     9241 ttttatggtg tgaagagttt ctgtagtgct ttcttctgca ttaccctctg ctctgctggt
     9301 atgcttggtg tgggcaggtc acctagaaga gagaagcaca aatagagaag gctagactct
     9361 gacctttgag ggaagagcca ctttcatcct ccccgagtaa aaaaataaaa atgaaacaca
     9421 cctgtacaca cacacacaca ctcacacaca caaggatgaa atggtaagtg ggtaagtcac
     9481 cttctaaatg tctttagcat ccgttggctg cttgttaatc tagttaagag tagattctag
     9541 acctgcgttg tccaattcac tagccagttc acagctaatt taaattaagt aaagtgaaga
     9601 attcagttcc ccaatccccc agccacattt caagtgctca gaagccaccc gtggaaagtg
     9661 tgttaccatt ttggacagca cagatataga acatttccat ctttgcagaa aatgcttttg
     9721 acagtgctgt ggtgcccaaa gagagaataa ggacaaaata aagatattca gttgacttat
     9781 gatactcttg gattttaccg gcatcgttaa agaaagctat ttttcttata aaaattaata
     9841 ccagcccttt ttaaagaccc tggaaaaatc aaaaccccat tcttggaaac tagttttcaa
     9901 tgtatttttt aaacagattc ttagcacttt actttttaag tgatattatt aaataacttc
     9961 ataaatcata acttactatc ttcaggtttt ttcctttttt aagtagtctt ttaaaattga
    10021 tgatacatag tttctaacat ttatccagca gaaactgatg aatgcttaac ttacttacaa
    10081 gtaaaagttg ataaacatca tattcctctg ttttgttacc tttaaatctt tctattctgt
    10141 tacttttttt tttttttttt tttttgcggt acgcgggcct ctcactgttg tggcctctcc
    10201 tattgcggag cacaggctcc ggacgcacag gctcagcggc catggctcac gggcccagcc
    10261 gctccgcggc atgtgggaat cttcccagaa cggggcacga acccgtgtcc cctgcattgg
    10321 caggtggact ctcaaccact gcgccaccag ggaagcccta ttctgttact tttaaatctg
    10381 tatagatcta aggagagttg ccaacagttt tttttgtttc tgcccctaaa atcacatttg
    10441 atcatcttct accttaaagg tttatcaaga tccaaatagt ttctttgatt ttcttcatag
    10501 tgtcttgctc ttaattactt agattatgaa tcaaattaag tttcatgtat gaagcaaaga
    10561 ttttattcca gcaacttaat gaaacatttt tttaagattt attaattgac ttggcctatt
    10621 actaaagtgc ttaacataac taaaaggatc tacgcaaatg catctttgaa ttttttaatg
    10681 aatgtaagag actaatcata ctttttggag tcagcttggt acttagtgaa aactatcccg
    10741 ttaggaagtc agatgctttc atcttcgttt ttaaattttt taatcaagca gcagacttga
    10801 tccagtagtg tcaaattcca agcaaatata atgaaattct tattgttatt caagtacaga
    10861 tgagtaaatg gtgtgatttg agtttgtttt attattttca tggtggtcta atttaatgtg
    10921 tgttctacag agactcattt tactagttaa gggagatttt caatgtactt gaaataagaa
    10981 agaacctgct agtataaata caggaaatga ctgtacacaa atgccaatca atcatttggg
    11041 ggcttttaaa ttttttaata gtaagctttt ggttttttaa tagccttagt tatttaaaat
    11101 tcagatgcac tgaaacgcca ttgctgtcac tagctgttta cagattatgt gtaattcata
    11161 aagctttgta ctcagaagaa taatttccag gtttactctt gttttgcagt tttcatgttt
    11221 tgacaattgc cccaccattt ataacactca atttctggtt gtgtaatgaa tggtaaaatt
    11281 caaacatatc taatttaata atttgcctta ttttgattaa caaattctat caaagatttg
    11341 gggatagaaa gaggcttctt tttcctatag tattttttaa acttttcaga tgagctggaa
    11401 aacaccttag tacattggag ttggagttgt actggttaca atcccagctc taaagcctta
    11461 tactcatgtc ttaagtatta ctgattgttc tgtgaattgt tagtttgata tttgacattg
    11521 tagttatcca ccttgcagtt tagcctttgc aaaaaggata ttgctaggta tgttcttatt
    11581 tctggttgac tattgaattc gtaatttcat gatttcattt ttagtcataa tccaaaaagg
    11641 aaatccacgt ggaactctaa atttctctct cacctcacaa atggaatcaa tacagtttta
    11701 acaacactgt acataaatgg catccaagca gttttccacc tgtttaccaa gtttaccaat
    11761 catttactct gtgttagact tgtgggtttt ctcactgttt ttctgaggta aatgacttgt
    11821 gagaaatttt caccaaaatc gcaaaaacat aaagtccaag aaatcaccag aagacagatt
    11881 tttaattttt tgaaatctta tattgtattt ccttttgata tcacttattc attttaattt
    11941 tatgactgcc aacttgttat ggtattaatt atatgtatat gtttatatgt atgcatatag
    12001 tatatgtata tgaagaataa agttaagatt tggtcaaact a
//
LOCUS       XM_032618414            3798 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus THAP domain containing 1 (THAP1),
            transcript variant X1, mRNA.
ACCESSION   XM_032618414
VERSION     XM_032618414.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3798
                     /gene="THAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:116746750"
     CDS             380..1234
                     /gene="THAP1"
                     /codon_start=1
                     /product="THAP domain-containing protein 1 isoform X1"
                     /protein_id="XP_032474305.1"
                     /db_xref="GeneID:116746750"
                     /translation="MKSCVSRTAAAWAVAGYRAWGRALSEGTRPTALGAASSGRCRGR
                     SPRRDGLLLRRKPQNGMIVIVRCLHGAIFIQPNSVFTSFTTLRKCGRNLRLFPLTRPS
                     LCKKWEAAVRRKNFKPTKYSSICSEHFTPDCFKRECNNKLLKEDAVPTIFLCTEPHDK
                     KEDLPEPQEQLPRPPSTPPVSQVDAAIGLLMPPLQTPDNLSVFCDHNYTVEDTMHQRK
                     RIHQLEQQVEKLRKKLKTAQQRCRRQERQLEKLKEVVHFQKEKDDVSERGYVILPNDY
                     FEIVEVPA"
     misc_feature    <665..835
                     /gene="THAP1"
                     /note="THAP domain; Region: THAP; pfam05485"
                     /db_xref="CDD:461662"
ORIGIN      
        1 tctcggcgcg cgtcgccgcg ccggcctgtc ctcgcgctta ggttcgcgcg ccgctcgggg
       61 tggcaggttc ggggcccaag ggcgatgcct ggagccccgg cgggtcgtga ggtctccaga
      121 cccggaggca gctggtttca tcacccgggt cgcggagtag gcaggtggta atgagtcttt
      181 agaagggagg ctgaagcagc agcagcgacg gggaaggccc gcgtttccct ttcctgctgg
      241 agggggcgtg gggcggtcca gcgtcgcagc cgttaggact gacttggcca ggcgtccggg
      301 aggatgtttt ggacccagtt tctaggaccc cacgttcaag gaccagtgag tttcccggaa
      361 aggttcaggt actgccaaga tgaagagctg tgtttcgcgc acagcggcag cgtgggcagt
      421 agcagggtat cgtgcgtggg gaagagcact ctcggaggga acgcggccca ccgccctcgg
      481 ggctgcttca tccgggaggt gccgcggccg gagtccgagg agggacggtc ttctcttgag
      541 aagaaaaccg cagaacggaa tgatagtgat cgttcgatgt ctgcacggtg ccattttcat
      601 tcagccaaat tcagtgttca caagttttac tacgttaaga aaatgtggcc gtaacttacg
      661 actgtttcct cttactcgac ccagtctttg taaaaaatgg gaggcagctg tcagaaggaa
      721 aaactttaag cccaccaagt acagcagcat ttgctcagaa cactttactc cggactgctt
      781 taagagggag tgcaacaaca agttactgaa agaggatgct gtccccacaa tatttctttg
      841 tactgaacca catgacaaga aggaagatct tccagagccc caagaacagc ttccccgacc
      901 tccttcaaca cccccggttt cccaggttga tgctgctatc gggttactca tgcctcctct
      961 tcagacccct gataacctct ccgttttctg tgaccacaac tacactgtgg aggacaccat
     1021 gcaccagagg aagaggattc accagctcga acagcaagta gagaagctca gaaagaagct
     1081 caagaccgca cagcagcggt gcagaagaca ggagcggcag ctggagaagc taaaggaggt
     1141 cgtgcacttc cagaaggaga aagacgacgt ctccgagagg ggttatgtga ttctaccaaa
     1201 tgactatttt gaaatagttg aagtcccagc atgaagagtg aaatttttgt tggtgttcag
     1261 tggggcaata ccacctaccc tcttctagcc tgtagaggag tttcatttga aaaaaattac
     1321 acttggtcac ttgtataaaa acagttcaga atattttttt aaaagaataa attagatata
     1381 tactgtaaaa ttgtaaatgt tttgtttgta atttcagggt ttttacattt taacaaaata
     1441 ttttaaaagt tataaactag cttcattgta agttggtttc aagattgggg atttttgttt
     1501 cttaatttga gtatttatag aaatgatatg aaaataaaaa gtaaagagaa tgataacagt
     1561 gcagtaagga tgatttaagt ttaaagttca aaatgaacag tttattcatt tagagagaga
     1621 gaacttagtc acattttaaa tcagaagcat gggacaataa cttctcagaa tatatatata
     1681 tatatatata tatatatata tatatatata ttcttattca catattctta tttgtaaagt
     1741 cagcagattc atttatcttt cttaatcatt tatcaaagat aaattggcaa gtcaatactt
     1801 aaaaaaaaaa aagattggtt gtctttagag cagaaaatga gtcattccat acctaatcaa
     1861 aatggttaaa agactttaaa gaatggattt ttaaaaagtg gacccttctt ttccccccac
     1921 tgtctggcat tatagaatta gaagtgtgtc tccactgcaa gatgcactct ccagtaagca
     1981 aagtaggcat tgttatcagt gaggtaatga ccaatgacca atgggggctg atccacggct
     2041 tgcctttttc tctcactgca ccgagctaag ggacatccag tccccaactg taggtgtacc
     2101 tgcatccaga tctctgccag atgtgttgtg tgggtagagt ttgacttgtt ccatgaggtg
     2161 aaaatcttgc acttgactaa ttgattttgg tcaaggcttc acataaaaaa tgatttcttc
     2221 acttttacca caagttagaa attacatccc atttacctta aggagtgatt tgcattcgaa
     2281 agcatcctga taggtaatgt ttattttact taatgccgag actcaaatac tgaggtttct
     2341 gttcaaactg tgagttgtgt tctgactttg tgagaaagtt tacatatatt tgaaatgaaa
     2401 acagttctga gtaaacaagt actgctgtag gaattaccta ctgagattta gagtaactgc
     2461 tccaactgta attatttcat atttcaaagt gctgcacaga cctttgaagt ctgtattaaa
     2521 gatactcagt ggtgatgtcc aagggtgtct tttgtagacc tgattttcag tgtaattcac
     2581 tgccatgcca gtactttgat tcatggagat tcgatttttt atgaaccagt atttcaaaaa
     2641 tagaaaatta tgattacttg aaattatatc gtctgataac acttagaact aactctaagg
     2701 aatcaggatt tttttctagt tattcgtgag tctcatcact gtttttagaa gccacaaaat
     2761 ctctaagtag tttgttttta catttcatct ctcttaacgg ttcctggaga atatgtgggt
     2821 aaatattttg caaagtgtat atcttaaatc taaattgtca tctacgtaaa aaaaatctgt
     2881 gtgtgtgtgc gtccatgtcc tcagaaccaa gaatccaaca ttgaattgta aaagagatca
     2941 tcataattac ttagtgtctt agcattatga tttaacctga agctactttt ttttcatgag
     3001 acataaatcc ctatttggag agaactgagc aagcagcatg tatgccaact gtttgcattt
     3061 aaatcattta ttatgtttaa catagggagt ttgaggtaca ggcgtttatt tctgaatatg
     3121 aaaggaacat ttgttgaaat gttttaaaaa ttcattttgt taaaattcat tttgtctatt
     3181 gtatcgttta tgacattgcc aagagaagga gaacatttag gctaaaatac gtcctcttca
     3241 atcatagtga aacttagtct gaaacagcag ggacaaggtc tcagtctgga acaagtgggg
     3301 aggagaccct tgtgagtttc accatagtat aaaagatgac atttatttta agcactgata
     3361 gtgacatcct aaagtttcca tctatgaatg atataatttg gcaataatag aagaaataac
     3421 tgtttcttaa tagaactgct aggaaaactg tagaatttta gaattagaat ggacctgaac
     3481 acttgctgaa cctccaaacc ctgcagaatc cctttgtgaa atactcctga caactggaca
     3541 tctgttctct gtatgccatt tacatttaag caattctgtt tagagccttt aaaatgggtt
     3601 tctggaatag agtagaattt gttaccagtt tttaaaatac ttctttataa tgcaactata
     3661 aactttgctt taaactactg catagtttga actatcaaat tccaaattaa agaagtttca
     3721 aaattttgta aaataaccta aatgtttatt agttgtgtac ctgttatgtg tactaaaaat
     3781 aattctgtca ttacagta
//
LOCUS       XM_032618415            1054 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus THAP domain containing 1 (THAP1),
            transcript variant X2, mRNA.
ACCESSION   XM_032618415
VERSION     XM_032618415.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1054
                     /gene="THAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746750"
     CDS             262..903
                     /gene="THAP1"
                     /codon_start=1
                     /product="THAP domain-containing protein 1 isoform X2"
                     /protein_id="XP_032474306.1"
                     /db_xref="GeneID:116746750"
                     /translation="MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKKWEAAVRRKN
                     FKPTKYSSICSEHFTPDCFKRECNNKLLKEDAVPTIFLCTEPHDKKEDLPEPQEQLPR
                     PPSTPPVSQVDAAIGLLMPPLQTPDNLSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLR
                     KKLKTAQQRCRRQERQLEKLKEVVHFQKEKDDVSERGYVILPNDYFEIVEVPA"
     misc_feature    271..507
                     /gene="THAP1"
                     /note="The THAP domain is a putative DNA-binding domain
                     (DBD) and probably also binds a zinc ion; Region: THAP;
                     smart00980"
                     /db_xref="CDD:214951"
ORIGIN      
        1 taggacgaac tcatcgcgag aggtgaggtt gaagctgcct ccgccatttt ggagatggga
       61 gacgggcgat ggctgtggtc cttctgctaa tgcaaacaac aaaaagagca catgagtcac
      121 tccgaataag gctctcatca ctctaactgc tgaccaaaac tacagaagca gcgaaggtgt
      181 caaagccgag cgcggcgaca acgatagcag cctcaactgc ctgctggggc ggcagaagtt
      241 aagtaactga gaaccggaag gatggtgcag tcctgttccg cctacggctg caagaaccga
      301 tacgacaagg ataagcccgt ttctttccac aagtttcctc ttactcgacc cagtctttgt
      361 aaaaaatggg aggcagctgt cagaaggaaa aactttaagc ccaccaagta cagcagcatt
      421 tgctcagaac actttactcc ggactgcttt aagagggagt gcaacaacaa gttactgaaa
      481 gaggatgctg tccccacaat atttctttgt actgaaccac atgacaagaa ggaagatctt
      541 ccagagcccc aagaacagct tccccgacct ccttcaacac ccccggtttc ccaggttgat
      601 gctgctatcg ggttactcat gcctcctctt cagacccctg ataacctctc cgttttctgt
      661 gaccacaact acactgtgga ggacaccatg caccagagga agaggattca ccagctcgaa
      721 cagcaagtag agaagctcag aaagaagctc aagaccgcac agcagcggtg cagaagacag
      781 gagcggcagc tggagaagct aaaggaggtc gtgcacttcc agaaggagaa agacgacgtc
      841 tccgagaggg gttatgtgat tctaccaaat gactattttg aaatagttga agtcccagca
      901 tgaagagtga aatttttgtt ggtgttcagt ggggcaatac cacctaccct cttctagcct
      961 gtagaggagt ttcatttgaa aaaaattaca cttggtcact tgtataaaaa cagttcagaa
     1021 tattttttta aaagaataaa ttagatatat actg
//
LOCUS       XM_032618417            3503 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus THAP domain containing 1 (THAP1),
            transcript variant X3, mRNA.
ACCESSION   XM_032618417
VERSION     XM_032618417.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3503
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3503
                     /gene="THAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:116746750"
     CDS             304..939
                     /gene="THAP1"
                     /codon_start=1
                     /product="THAP domain-containing protein 1 isoform X3"
                     /protein_id="XP_032474308.1"
                     /db_xref="GeneID:116746750"
                     /translation="MFWTQFLGPHVQGPVSFPERFRFPLTRPSLCKKWEAAVRRKNFK
                     PTKYSSICSEHFTPDCFKRECNNKLLKEDAVPTIFLCTEPHDKKEDLPEPQEQLPRPP
                     STPPVSQVDAAIGLLMPPLQTPDNLSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKK
                     LKTAQQRCRRQERQLEKLKEVVHFQKEKDDVSERGYVILPNDYFEIVEVPA"
     misc_feature    <364..543
                     /gene="THAP1"
                     /note="The THAP domain is a putative DNA-binding domain
                     (DBD) and probably also binds a zinc ion; Region: THAP;
                     smart00980"
                     /db_xref="CDD:214951"
ORIGIN      
        1 tctcggcgcg cgtcgccgcg ccggcctgtc ctcgcgctta ggttcgcgcg ccgctcgggg
       61 tggcaggttc ggggcccaag ggcgatgcct ggagccccgg cgggtcgtga ggtctccaga
      121 cccggaggca gctggtttca tcacccgggt cgcggagtag gcaggtggta atgagtcttt
      181 agaagggagg ctgaagcagc agcagcgacg gggaaggccc gcgtttccct ttcctgctgg
      241 agggggcgtg gggcggtcca gcgtcgcagc cgttaggact gacttggcca ggcgtccggg
      301 aggatgtttt ggacccagtt tctaggaccc cacgttcaag gaccagtgag tttcccggaa
      361 aggttcaggt ttcctcttac tcgacccagt ctttgtaaaa aatgggaggc agctgtcaga
      421 aggaaaaact ttaagcccac caagtacagc agcatttgct cagaacactt tactccggac
      481 tgctttaaga gggagtgcaa caacaagtta ctgaaagagg atgctgtccc cacaatattt
      541 ctttgtactg aaccacatga caagaaggaa gatcttccag agccccaaga acagcttccc
      601 cgacctcctt caacaccccc ggtttcccag gttgatgctg ctatcgggtt actcatgcct
      661 cctcttcaga cccctgataa cctctccgtt ttctgtgacc acaactacac tgtggaggac
      721 accatgcacc agaggaagag gattcaccag ctcgaacagc aagtagagaa gctcagaaag
      781 aagctcaaga ccgcacagca gcggtgcaga agacaggagc ggcagctgga gaagctaaag
      841 gaggtcgtgc acttccagaa ggagaaagac gacgtctccg agaggggtta tgtgattcta
      901 ccaaatgact attttgaaat agttgaagtc ccagcatgaa gagtgaaatt tttgttggtg
      961 ttcagtgggg caataccacc taccctcttc tagcctgtag aggagtttca tttgaaaaaa
     1021 attacacttg gtcacttgta taaaaacagt tcagaatatt tttttaaaag aataaattag
     1081 atatatactg taaaattgta aatgttttgt ttgtaatttc agggttttta cattttaaca
     1141 aaatatttta aaagttataa actagcttca ttgtaagttg gtttcaagat tggggatttt
     1201 tgtttcttaa tttgagtatt tatagaaatg atatgaaaat aaaaagtaaa gagaatgata
     1261 acagtgcagt aaggatgatt taagtttaaa gttcaaaatg aacagtttat tcatttagag
     1321 agagagaact tagtcacatt ttaaatcaga agcatgggac aataacttct cagaatatat
     1381 atatatatat atatatatat atatatatat atatattctt attcacatat tcttatttgt
     1441 aaagtcagca gattcattta tctttcttaa tcatttatca aagataaatt ggcaagtcaa
     1501 tacttaaaaa aaaaaaagat tggttgtctt tagagcagaa aatgagtcat tccataccta
     1561 atcaaaatgg ttaaaagact ttaaagaatg gatttttaaa aagtggaccc ttcttttccc
     1621 cccactgtct ggcattatag aattagaagt gtgtctccac tgcaagatgc actctccagt
     1681 aagcaaagta ggcattgtta tcagtgaggt aatgaccaat gaccaatggg ggctgatcca
     1741 cggcttgcct ttttctctca ctgcaccgag ctaagggaca tccagtcccc aactgtaggt
     1801 gtacctgcat ccagatctct gccagatgtg ttgtgtgggt agagtttgac ttgttccatg
     1861 aggtgaaaat cttgcacttg actaattgat tttggtcaag gcttcacata aaaaatgatt
     1921 tcttcacttt taccacaagt tagaaattac atcccattta ccttaaggag tgatttgcat
     1981 tcgaaagcat cctgataggt aatgtttatt ttacttaatg ccgagactca aatactgagg
     2041 tttctgttca aactgtgagt tgtgttctga ctttgtgaga aagtttacat atatttgaaa
     2101 tgaaaacagt tctgagtaaa caagtactgc tgtaggaatt acctactgag atttagagta
     2161 actgctccaa ctgtaattat ttcatatttc aaagtgctgc acagaccttt gaagtctgta
     2221 ttaaagatac tcagtggtga tgtccaaggg tgtcttttgt agacctgatt ttcagtgtaa
     2281 ttcactgcca tgccagtact ttgattcatg gagattcgat tttttatgaa ccagtatttc
     2341 aaaaatagaa aattatgatt acttgaaatt atatcgtctg ataacactta gaactaactc
     2401 taaggaatca ggattttttt ctagttattc gtgagtctca tcactgtttt tagaagccac
     2461 aaaatctcta agtagtttgt ttttacattt catctctctt aacggttcct ggagaatatg
     2521 tgggtaaata ttttgcaaag tgtatatctt aaatctaaat tgtcatctac gtaaaaaaaa
     2581 tctgtgtgtg tgtgcgtcca tgtcctcaga accaagaatc caacattgaa ttgtaaaaga
     2641 gatcatcata attacttagt gtcttagcat tatgatttaa cctgaagcta cttttttttc
     2701 atgagacata aatccctatt tggagagaac tgagcaagca gcatgtatgc caactgtttg
     2761 catttaaatc atttattatg tttaacatag ggagtttgag gtacaggcgt ttatttctga
     2821 atatgaaagg aacatttgtt gaaatgtttt aaaaattcat tttgttaaaa ttcattttgt
     2881 ctattgtatc gtttatgaca ttgccaagag aaggagaaca tttaggctaa aatacgtcct
     2941 cttcaatcat agtgaaactt agtctgaaac agcagggaca aggtctcagt ctggaacaag
     3001 tggggaggag acccttgtga gtttcaccat agtataaaag atgacattta ttttaagcac
     3061 tgatagtgac atcctaaagt ttccatctat gaatgatata atttggcaat aatagaagaa
     3121 ataactgttt cttaatagaa ctgctaggaa aactgtagaa ttttagaatt agaatggacc
     3181 tgaacacttg ctgaacctcc aaaccctgca gaatcccttt gtgaaatact cctgacaact
     3241 ggacatctgt tctctgtatg ccatttacat ttaagcaatt ctgtttagag cctttaaaat
     3301 gggtttctgg aatagagtag aatttgttac cagtttttaa aatacttctt tataatgcaa
     3361 ctataaactt tgctttaaac tactgcatag tttgaactat caaattccaa attaaagaag
     3421 tttcaaaatt ttgtaaaata acctaaatgt ttattagttg tgtacctgtt atgtgtacta
     3481 aaaataattc tgtcattaca gta
//
LOCUS       XM_032618418            3805 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus THAP domain containing 1 (THAP1),
            transcript variant X4, mRNA.
ACCESSION   XM_032618418
VERSION     XM_032618418.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3805
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3805
                     /gene="THAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746750"
     CDS             645..1241
                     /gene="THAP1"
                     /codon_start=1
                     /product="THAP domain-containing protein 1 isoform X4"
                     /protein_id="XP_032474309.1"
                     /db_xref="GeneID:116746750"
                     /translation="MDIFQLIKRFPLTRPSLCKKWEAAVRRKNFKPTKYSSICSEHFT
                     PDCFKRECNNKLLKEDAVPTIFLCTEPHDKKEDLPEPQEQLPRPPSTPPVSQVDAAIG
                     LLMPPLQTPDNLSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKLKTAQQRCRRQER
                     QLEKLKEVVHFQKEKDDVSERGYVILPNDYFEIVEVPA"
     misc_feature    <669..845
                     /gene="THAP1"
                     /note="The THAP domain is a putative DNA-binding domain
                     (DBD) and probably also binds a zinc ion; Region: THAP;
                     smart00980"
                     /db_xref="CDD:214951"
ORIGIN      
        1 tctcggcgcg cgtcgccgcg ccggcctgtc ctcgcgctta ggttcgcgcg ccgctcgggg
       61 tggcaggttc ggggcccaag ggcgatgcct ggagccccgg cgggtcgtga ggtctccaga
      121 cccggaggca gctggtttca tcacccgggt cgcggagtag gcaggtggta atgagtcttt
      181 agaagggagg ctgaagcagc agcagcgacg gggaaggccc gcgtttccct ttcctgctgg
      241 agggggcgtg gggcggtcca gcgtcgcagc cgttaggact gacttggcca ggcgtccggg
      301 aggatgtttt ggacccagtt tctaggaccc cacgttcaag gaccagtgag tttcccggaa
      361 aggttcaggc acttccagca ggaaccttct aggagtcctt ttctcacttt ctacctgatg
      421 gcagtgggaa catctatgct gggcaaagaa aagggactgc cccaacggtg ggttagagct
      481 tccggatcac agcagagtca ggctcaggcg tacctcactt ggaagaggaa ctgtggaaca
      541 cagatgcaaa gcaccctaat ttatttagct cactaaatcc ttgacctgga agaataaaat
      601 cacaataagt ttaagctttt cctagctccc tttatctggg cctaatggac atatttcagt
      661 tgattaagag gtttcctctt actcgaccca gtctttgtaa aaaatgggag gcagctgtca
      721 gaaggaaaaa ctttaagccc accaagtaca gcagcatttg ctcagaacac tttactccgg
      781 actgctttaa gagggagtgc aacaacaagt tactgaaaga ggatgctgtc cccacaatat
      841 ttctttgtac tgaaccacat gacaagaagg aagatcttcc agagccccaa gaacagcttc
      901 cccgacctcc ttcaacaccc ccggtttccc aggttgatgc tgctatcggg ttactcatgc
      961 ctcctcttca gacccctgat aacctctccg ttttctgtga ccacaactac actgtggagg
     1021 acaccatgca ccagaggaag aggattcacc agctcgaaca gcaagtagag aagctcagaa
     1081 agaagctcaa gaccgcacag cagcggtgca gaagacagga gcggcagctg gagaagctaa
     1141 aggaggtcgt gcacttccag aaggagaaag acgacgtctc cgagaggggt tatgtgattc
     1201 taccaaatga ctattttgaa atagttgaag tcccagcatg aagagtgaaa tttttgttgg
     1261 tgttcagtgg ggcaatacca cctaccctct tctagcctgt agaggagttt catttgaaaa
     1321 aaattacact tggtcacttg tataaaaaca gttcagaata tttttttaaa agaataaatt
     1381 agatatatac tgtaaaattg taaatgtttt gtttgtaatt tcagggtttt tacattttaa
     1441 caaaatattt taaaagttat aaactagctt cattgtaagt tggtttcaag attggggatt
     1501 tttgtttctt aatttgagta tttatagaaa tgatatgaaa ataaaaagta aagagaatga
     1561 taacagtgca gtaaggatga tttaagttta aagttcaaaa tgaacagttt attcatttag
     1621 agagagagaa cttagtcaca ttttaaatca gaagcatggg acaataactt ctcagaatat
     1681 atatatatat atatatatat atatatatat atatatattc ttattcacat attcttattt
     1741 gtaaagtcag cagattcatt tatctttctt aatcatttat caaagataaa ttggcaagtc
     1801 aatacttaaa aaaaaaaaag attggttgtc tttagagcag aaaatgagtc attccatacc
     1861 taatcaaaat ggttaaaaga ctttaaagaa tggattttta aaaagtggac ccttcttttc
     1921 cccccactgt ctggcattat agaattagaa gtgtgtctcc actgcaagat gcactctcca
     1981 gtaagcaaag taggcattgt tatcagtgag gtaatgacca atgaccaatg ggggctgatc
     2041 cacggcttgc ctttttctct cactgcaccg agctaaggga catccagtcc ccaactgtag
     2101 gtgtacctgc atccagatct ctgccagatg tgttgtgtgg gtagagtttg acttgttcca
     2161 tgaggtgaaa atcttgcact tgactaattg attttggtca aggcttcaca taaaaaatga
     2221 tttcttcact tttaccacaa gttagaaatt acatcccatt taccttaagg agtgatttgc
     2281 attcgaaagc atcctgatag gtaatgttta ttttacttaa tgccgagact caaatactga
     2341 ggtttctgtt caaactgtga gttgtgttct gactttgtga gaaagtttac atatatttga
     2401 aatgaaaaca gttctgagta aacaagtact gctgtaggaa ttacctactg agatttagag
     2461 taactgctcc aactgtaatt atttcatatt tcaaagtgct gcacagacct ttgaagtctg
     2521 tattaaagat actcagtggt gatgtccaag ggtgtctttt gtagacctga ttttcagtgt
     2581 aattcactgc catgccagta ctttgattca tggagattcg attttttatg aaccagtatt
     2641 tcaaaaatag aaaattatga ttacttgaaa ttatatcgtc tgataacact tagaactaac
     2701 tctaaggaat caggattttt ttctagttat tcgtgagtct catcactgtt tttagaagcc
     2761 acaaaatctc taagtagttt gtttttacat ttcatctctc ttaacggttc ctggagaata
     2821 tgtgggtaaa tattttgcaa agtgtatatc ttaaatctaa attgtcatct acgtaaaaaa
     2881 aatctgtgtg tgtgtgcgtc catgtcctca gaaccaagaa tccaacattg aattgtaaaa
     2941 gagatcatca taattactta gtgtcttagc attatgattt aacctgaagc tacttttttt
     3001 tcatgagaca taaatcccta tttggagaga actgagcaag cagcatgtat gccaactgtt
     3061 tgcatttaaa tcatttatta tgtttaacat agggagtttg aggtacaggc gtttatttct
     3121 gaatatgaaa ggaacatttg ttgaaatgtt ttaaaaattc attttgttaa aattcatttt
     3181 gtctattgta tcgtttatga cattgccaag agaaggagaa catttaggct aaaatacgtc
     3241 ctcttcaatc atagtgaaac ttagtctgaa acagcaggga caaggtctca gtctggaaca
     3301 agtggggagg agacccttgt gagtttcacc atagtataaa agatgacatt tattttaagc
     3361 actgatagtg acatcctaaa gtttccatct atgaatgata taatttggca ataatagaag
     3421 aaataactgt ttcttaatag aactgctagg aaaactgtag aattttagaa ttagaatgga
     3481 cctgaacact tgctgaacct ccaaaccctg cagaatccct ttgtgaaata ctcctgacaa
     3541 ctggacatct gttctctgta tgccatttac atttaagcaa ttctgtttag agcctttaaa
     3601 atgggtttct ggaatagagt agaatttgtt accagttttt aaaatacttc tttataatgc
     3661 aactataaac tttgctttaa actactgcat agtttgaact atcaaattcc aaattaaaga
     3721 agtttcaaaa ttttgtaaaa taacctaaat gtttattagt tgtgtacctg ttatgtgtac
     3781 taaaaataat tctgtcatta cagta
//
LOCUS       XM_032618419             991 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus THAP domain containing 1 (THAP1),
            transcript variant X5, mRNA.
ACCESSION   XM_032618419
VERSION     XM_032618419.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..991
                     /gene="THAP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746750"
     CDS             380..919
                     /gene="THAP1"
                     /codon_start=1
                     /product="THAP domain-containing protein 1 isoform X5"
                     /protein_id="XP_032474310.1"
                     /db_xref="GeneID:116746750"
                     /translation="MKSCVSRTAAAWAVAGYRAWGRALSEGTRPTALGAASSGRCRGR
                     SPRRDGLLLRRKPQNGMIVIVRCLHGAIFIQPNSVFTSFTTLRKCGRNLRLFPLTRPS
                     LCKKWEAAVRRKNFKPTKYSSICSEHFTPDCFKRECNNKLLKEDAVPTIFLCTEPHDK
                     MSSCERFRHETETCSASLF"
     misc_feature    <665..835
                     /gene="THAP1"
                     /note="THAP domain; Region: THAP; pfam05485"
                     /db_xref="CDD:461662"
ORIGIN      
        1 tctcggcgcg cgtcgccgcg ccggcctgtc ctcgcgctta ggttcgcgcg ccgctcgggg
       61 tggcaggttc ggggcccaag ggcgatgcct ggagccccgg cgggtcgtga ggtctccaga
      121 cccggaggca gctggtttca tcacccgggt cgcggagtag gcaggtggta atgagtcttt
      181 agaagggagg ctgaagcagc agcagcgacg gggaaggccc gcgtttccct ttcctgctgg
      241 agggggcgtg gggcggtcca gcgtcgcagc cgttaggact gacttggcca ggcgtccggg
      301 aggatgtttt ggacccagtt tctaggaccc cacgttcaag gaccagtgag tttcccggaa
      361 aggttcaggt actgccaaga tgaagagctg tgtttcgcgc acagcggcag cgtgggcagt
      421 agcagggtat cgtgcgtggg gaagagcact ctcggaggga acgcggccca ccgccctcgg
      481 ggctgcttca tccgggaggt gccgcggccg gagtccgagg agggacggtc ttctcttgag
      541 aagaaaaccg cagaacggaa tgatagtgat cgttcgatgt ctgcacggtg ccattttcat
      601 tcagccaaat tcagtgttca caagttttac tacgttaaga aaatgtggcc gtaacttacg
      661 actgtttcct cttactcgac ccagtctttg taaaaaatgg gaggcagctg tcagaaggaa
      721 aaactttaag cccaccaagt acagcagcat ttgctcagaa cactttactc cggactgctt
      781 taagagggag tgcaacaaca agttactgaa agaggatgct gtccccacaa tatttctttg
      841 tactgaacca catgacaaga tgagttcttg tgaacggttt cgtcatgaaa ctgaaacgtg
      901 ctctgcatct ttgttttaga aggaagatct tccagagccc caagaacagc ttccccgacc
      961 tccttcaaca cccccggttt cccaggttga t
//
LOCUS       XM_032618420            3594 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 170 (RNF170),
            transcript variant X1, mRNA.
ACCESSION   XM_032618420
VERSION     XM_032618420.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3594
                     /gene="RNF170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746751"
     CDS             273..1052
                     /gene="RNF170"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF170 isoform X1"
                     /protein_id="XP_032474311.1"
                     /db_xref="GeneID:116746751"
                     /translation="MAKYQGEVHSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYAL
                     FSRNAHQNIHPENQELVRVLREQLQTEQDAPAAARQQFYTDMYCPICLHQASLPVETN
                     CGHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLTVFGENDQSQDAVSLHQDINDY
                     NRRFSGQPRSIMERIMDLPTLLRHAFREVFSVGGLFWMFRIRIILCLMGAFFYLISPL
                     DFVPEALFGILGFLDDFFVVFLLLIYISIMYREVVTQRLNR"
     misc_feature    525..695
                     /gene="RNF170"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 170 (RNF170) and similar proteins; Region:
                     RING-HC_RNF170; cd16553"
                     /db_xref="CDD:438215"
     misc_feature    882..992
                     /gene="RNF170"
                     /note="Protein of unknown function (DUF1232); Region:
                     DUF1232; pfam06803"
                     /db_xref="CDD:462011"
ORIGIN      
        1 tgcgcgtgcg ccgtgcccgc gcacccggcc cggaggaggc agccagtggt cgcccgcgag
       61 ggtggcgggc agccccggaa acaatctgtg ccctcggtca ccgggagctg gcgaggtgtc
      121 ctccacggtg cagagattgg cttctttcca aactgaggtg gtggcataat acctcatttt
      181 tgagccagca gcgcctgcag ttcctttttg gactcctgtg ataagaaaaa ctactggcgg
      241 aagttaacta ctgaagcccc gacagacctg gaatggccaa atatcaaggt gaagttcaca
      301 gtttgaaact ggatgatgat tcagtcatag aaggagtaag tgaccaagta cttgtggcag
      361 ttgtggtcag tttcgctttg attgctaccc tggtatatgc acttttcagc agaaatgcac
      421 atcaaaacat tcacccagaa aaccaagagc tagtacgggt gcttcgggaa caacttcaaa
      481 cagaacagga tgcacctgct gctgcccgac agcagttcta cactgacatg tactgtccga
      541 tctgtttaca tcaagcttcc ctccctgttg aaacaaactg tggacatctc ttttgtggta
      601 cctgcattgt ggcgtactgg cgatacggtt catggcttgg ggcaatcagt tgtccaatct
      661 gtagacaaac ggtaacttta ctgctaacag tatttggtga aaatgaccag tctcaggatg
      721 ctgtatcatt gcatcaagat attaatgatt ataaccggag attctcaggg cagcccagat
      781 ctattatgga aagaattatg gacctaccca ctttactgag gcatgcattc agggaggtgt
      841 tttcggtcgg aggccttttc tggatgttcc gtatcaggat aatactttgt ttaatggggg
      901 cttttttcta ccttatatcg cctctagatt ttgtgcctga agccctgttt ggaattctag
      961 gctttctcga tgatttcttt gtcgtatttt tgttgctcat ctacatctct attatgtacc
     1021 gagaagtagt aacacagaga ctcaacagat gagaaaatga gtgcactaaa atatttgagc
     1081 caatgtgtaa aatcaaacaa aaggaccatg gcagtttaaa gcatttgaat attatcttac
     1141 aagtttaaaa ccactgtatg acaaacattt gtcatttgca aatgcctagc aatatatgac
     1201 tggaattttt acatgttgca ggtcccaata gtaaggttag aattatagtg atttacaact
     1261 gtatcttcat tctgtgttgt ctataaagtt gtggaaaaat atggaattat ataaaatggg
     1321 atgcttctat atcttctccc ccaccaaact attcaggtta actggatgta tagtaaggtg
     1381 ttgtcaaatg tacagtttat ccaattcatc cttctcgggg agtacccaca tgataatata
     1441 ttgctgtgag actcacctaa gtattttggt tacaataaaa tattgtacaa tattggggaa
     1501 aaatcagtgt ttctttgagt agctaggttt tgttcatttg gagcagttct gcttttccat
     1561 tctgatagaa ttctttgcta ccagctgaag gggaaagaag aaacttgaac tttgttaatt
     1621 tgattttata ttctggttta cagaacactt ccttaagtga caggagaatt aacaagttgt
     1681 gagacattgg actccagcca gcactcttga tattctcagt tatggcattt cagtaagagt
     1741 ttggtccttt tataggaaca gtatataaaa gttacttgta aagggaattt ttgtttcagg
     1801 aacctgggtg atactgcaga cacataacag tttggtacat tcctgaggaa ggtggttctc
     1861 cgtagctgtg agcatcaaag acctgaggag ggtactagga acactaaatt tgacaagaga
     1921 agttactggt gagctatagc gacagaatgt acagatctgg ttagttttct cttgtcagaa
     1981 cacttctgta atactgtccc tagatgacag aatatagccc agattcatca ggccttgtgc
     2041 agaatgagat gattcagcag gaacgttatc ttggtttttg gatgactaca gcataagtac
     2101 ttaacgctct tttatgcaat tttctgtttg agaagaatca aaaccgcaag tattatgaaa
     2161 tcttaactcc ctcagctggc actgcccttg agtgacctgg acagcagggt agtcactgat
     2221 ccccagggct caggcagtgt cagctctgcg cctggcagcc actgctagtc atcctgtcca
     2281 cccatgtatc agtgagcctc actgtcagtc ttccaggtga atcagaggcc atcaactgat
     2341 gagatgctga atgatacatc agtagtgtct tgtaatttgg gcctaagaca aagctgctgc
     2401 ttgtcacaga gaaaaacaaa atccttaagt atagcacatt gtaattaaag cgatttcttg
     2461 cataccattc atttaatcct caagagagtt aggtgaagaa gacagggcat taccttcctt
     2521 ttcatagatg aaatccctga cgtggatgaa acggcttttt tttgtctgaa gccatgcaca
     2581 gataagtgac cgaactggta ttagactcct aggactccta catggggaga aactgggatc
     2641 ctttggaaga cttttggaac atactggagt aggacagctt gggttctcct aagaacaaag
     2701 gtttagaaag attacatatc aagactccat gaatcctgat tcaccatgtc caaatcaaac
     2761 ttctcatagg gtggcacact tcataggaaa acgtttcagc tgcagtcact aacttgagaa
     2821 gctaatgagt aggagttctt tacaccacca tttatcagtc tcgaaacgca ttgcctacca
     2881 attataaatt tggtgtgggg ctacagcaaa gccatttttg aaaggtttta attttctgtg
     2941 catgtgttct gcttcaagtg tcacacttac agtactttta ttgtaatatt tggaattcct
     3001 tctaagactt tcctggtaga ggcgtattgt accaactttt gtaacataca aaaacactgt
     3061 atgaagtctt actaagttga aaagggaata tgctgtcttc tcagaagttt agacctgttt
     3121 actatgtcat ctttattgat cagtgataat aaatgtagaa gggatccgag agtatttaaa
     3181 gcaagtagag tcaatcagtg ttttaaattt ttaaacatca tagtaatact tctgtgattc
     3241 agagttagag catataaatc aaagtaacag tttggatttt cgtaaacaac aatattgtaa
     3301 ctttcaaaaa acagatggtc cagccccagg agcagataac ttgggcagct ctgtggggag
     3361 ggagacagag gaaacagttg ttctaactgt ccactagaac agtggttcca gctgctacag
     3421 ttctcagcac tgaaagtaac atgggaagaa aggactgtgc tggtccctct ggctgtgcgg
     3481 atacctacct cacagagctg tttcagagga ctgacagttt ggttcaaacc ttgtgattta
     3541 agagtttgtc aagcagtgac tcttttgaat aaaagcaaca tatctaaaat taaa
//
LOCUS       XM_032618421            3591 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 170 (RNF170),
            transcript variant X2, mRNA.
ACCESSION   XM_032618421
VERSION     XM_032618421.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3591
                     /gene="RNF170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746751"
     CDS             273..1049
                     /gene="RNF170"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF170 isoform X2"
                     /protein_id="XP_032474312.1"
                     /db_xref="GeneID:116746751"
                     /translation="MAKYQGEVHSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYAL
                     FRNAHQNIHPENQELVRVLREQLQTEQDAPAAARQQFYTDMYCPICLHQASLPVETNC
                     GHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLTVFGENDQSQDAVSLHQDINDYN
                     RRFSGQPRSIMERIMDLPTLLRHAFREVFSVGGLFWMFRIRIILCLMGAFFYLISPLD
                     FVPEALFGILGFLDDFFVVFLLLIYISIMYREVVTQRLNR"
     misc_feature    522..692
                     /gene="RNF170"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 170 (RNF170) and similar proteins; Region:
                     RING-HC_RNF170; cd16553"
                     /db_xref="CDD:438215"
     misc_feature    879..989
                     /gene="RNF170"
                     /note="Protein of unknown function (DUF1232); Region:
                     DUF1232; pfam06803"
                     /db_xref="CDD:462011"
ORIGIN      
        1 tgcgcgtgcg ccgtgcccgc gcacccggcc cggaggaggc agccagtggt cgcccgcgag
       61 ggtggcgggc agccccggaa acaatctgtg ccctcggtca ccgggagctg gcgaggtgtc
      121 ctccacggtg cagagattgg cttctttcca aactgaggtg gtggcataat acctcatttt
      181 tgagccagca gcgcctgcag ttcctttttg gactcctgtg ataagaaaaa ctactggcgg
      241 aagttaacta ctgaagcccc gacagacctg gaatggccaa atatcaaggt gaagttcaca
      301 gtttgaaact ggatgatgat tcagtcatag aaggagtaag tgaccaagta cttgtggcag
      361 ttgtggtcag tttcgctttg attgctaccc tggtatatgc acttttcaga aatgcacatc
      421 aaaacattca cccagaaaac caagagctag tacgggtgct tcgggaacaa cttcaaacag
      481 aacaggatgc acctgctgct gcccgacagc agttctacac tgacatgtac tgtccgatct
      541 gtttacatca agcttccctc cctgttgaaa caaactgtgg acatctcttt tgtggtacct
      601 gcattgtggc gtactggcga tacggttcat ggcttggggc aatcagttgt ccaatctgta
      661 gacaaacggt aactttactg ctaacagtat ttggtgaaaa tgaccagtct caggatgctg
      721 tatcattgca tcaagatatt aatgattata accggagatt ctcagggcag cccagatcta
      781 ttatggaaag aattatggac ctacccactt tactgaggca tgcattcagg gaggtgtttt
      841 cggtcggagg ccttttctgg atgttccgta tcaggataat actttgttta atgggggctt
      901 ttttctacct tatatcgcct ctagattttg tgcctgaagc cctgtttgga attctaggct
      961 ttctcgatga tttctttgtc gtatttttgt tgctcatcta catctctatt atgtaccgag
     1021 aagtagtaac acagagactc aacagatgag aaaatgagtg cactaaaata tttgagccaa
     1081 tgtgtaaaat caaacaaaag gaccatggca gtttaaagca tttgaatatt atcttacaag
     1141 tttaaaacca ctgtatgaca aacatttgtc atttgcaaat gcctagcaat atatgactgg
     1201 aatttttaca tgttgcaggt cccaatagta aggttagaat tatagtgatt tacaactgta
     1261 tcttcattct gtgttgtcta taaagttgtg gaaaaatatg gaattatata aaatgggatg
     1321 cttctatatc ttctccccca ccaaactatt caggttaact ggatgtatag taaggtgttg
     1381 tcaaatgtac agtttatcca attcatcctt ctcggggagt acccacatga taatatattg
     1441 ctgtgagact cacctaagta ttttggttac aataaaatat tgtacaatat tggggaaaaa
     1501 tcagtgtttc tttgagtagc taggttttgt tcatttggag cagttctgct tttccattct
     1561 gatagaattc tttgctacca gctgaagggg aaagaagaaa cttgaacttt gttaatttga
     1621 ttttatattc tggtttacag aacacttcct taagtgacag gagaattaac aagttgtgag
     1681 acattggact ccagccagca ctcttgatat tctcagttat ggcatttcag taagagtttg
     1741 gtccttttat aggaacagta tataaaagtt acttgtaaag ggaatttttg tttcaggaac
     1801 ctgggtgata ctgcagacac ataacagttt ggtacattcc tgaggaaggt ggttctccgt
     1861 agctgtgagc atcaaagacc tgaggagggt actaggaaca ctaaatttga caagagaagt
     1921 tactggtgag ctatagcgac agaatgtaca gatctggtta gttttctctt gtcagaacac
     1981 ttctgtaata ctgtccctag atgacagaat atagcccaga ttcatcaggc cttgtgcaga
     2041 atgagatgat tcagcaggaa cgttatcttg gtttttggat gactacagca taagtactta
     2101 acgctctttt atgcaatttt ctgtttgaga agaatcaaaa ccgcaagtat tatgaaatct
     2161 taactccctc agctggcact gcccttgagt gacctggaca gcagggtagt cactgatccc
     2221 cagggctcag gcagtgtcag ctctgcgcct ggcagccact gctagtcatc ctgtccaccc
     2281 atgtatcagt gagcctcact gtcagtcttc caggtgaatc agaggccatc aactgatgag
     2341 atgctgaatg atacatcagt agtgtcttgt aatttgggcc taagacaaag ctgctgcttg
     2401 tcacagagaa aaacaaaatc cttaagtata gcacattgta attaaagcga tttcttgcat
     2461 accattcatt taatcctcaa gagagttagg tgaagaagac agggcattac cttccttttc
     2521 atagatgaaa tccctgacgt ggatgaaacg gctttttttt gtctgaagcc atgcacagat
     2581 aagtgaccga actggtatta gactcctagg actcctacat ggggagaaac tgggatcctt
     2641 tggaagactt ttggaacata ctggagtagg acagcttggg ttctcctaag aacaaaggtt
     2701 tagaaagatt acatatcaag actccatgaa tcctgattca ccatgtccaa atcaaacttc
     2761 tcatagggtg gcacacttca taggaaaacg tttcagctgc agtcactaac ttgagaagct
     2821 aatgagtagg agttctttac accaccattt atcagtctcg aaacgcattg cctaccaatt
     2881 ataaatttgg tgtggggcta cagcaaagcc atttttgaaa ggttttaatt ttctgtgcat
     2941 gtgttctgct tcaagtgtca cacttacagt acttttattg taatatttgg aattccttct
     3001 aagactttcc tggtagaggc gtattgtacc aacttttgta acatacaaaa acactgtatg
     3061 aagtcttact aagttgaaaa gggaatatgc tgtcttctca gaagtttaga cctgtttact
     3121 atgtcatctt tattgatcag tgataataaa tgtagaaggg atccgagagt atttaaagca
     3181 agtagagtca atcagtgttt taaattttta aacatcatag taatacttct gtgattcaga
     3241 gttagagcat ataaatcaaa gtaacagttt ggattttcgt aaacaacaat attgtaactt
     3301 tcaaaaaaca gatggtccag ccccaggagc agataacttg ggcagctctg tggggaggga
     3361 gacagaggaa acagttgttc taactgtcca ctagaacagt ggttccagct gctacagttc
     3421 tcagcactga aagtaacatg ggaagaaagg actgtgctgg tccctctggc tgtgcggata
     3481 cctacctcac agagctgttt cagaggactg acagtttggt tcaaaccttg tgatttaaga
     3541 gtttgtcaag cagtgactct tttgaataaa agcaacatat ctaaaattaa a
//
LOCUS       XM_032618422            3697 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 170 (RNF170),
            transcript variant X3, mRNA.
ACCESSION   XM_032618422
VERSION     XM_032618422.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3697
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3697
                     /gene="RNF170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746751"
     CDS             376..1155
                     /gene="RNF170"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF170 isoform X1"
                     /protein_id="XP_032474313.1"
                     /db_xref="GeneID:116746751"
                     /translation="MAKYQGEVHSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYAL
                     FSRNAHQNIHPENQELVRVLREQLQTEQDAPAAARQQFYTDMYCPICLHQASLPVETN
                     CGHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLTVFGENDQSQDAVSLHQDINDY
                     NRRFSGQPRSIMERIMDLPTLLRHAFREVFSVGGLFWMFRIRIILCLMGAFFYLISPL
                     DFVPEALFGILGFLDDFFVVFLLLIYISIMYREVVTQRLNR"
     misc_feature    628..798
                     /gene="RNF170"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 170 (RNF170) and similar proteins; Region:
                     RING-HC_RNF170; cd16553"
                     /db_xref="CDD:438215"
     misc_feature    985..1095
                     /gene="RNF170"
                     /note="Protein of unknown function (DUF1232); Region:
                     DUF1232; pfam06803"
                     /db_xref="CDD:462011"
ORIGIN      
        1 accggcgccc ctcctcctcc ggcccgtcgg gaccgcgcgg caccgcgcgc gcccgccccg
       61 cccgcggacc tgcagtcccg cagccccgca gccccgctcc cgccgagacc ccagcccggc
      121 ccgagccgca gtagcccagc actgcgcacg gccgcgcccg ccgcccgctg cgtgtcgccc
      181 ccgcgcgctc cccgccggct ggtccccgcc gcgccctcac ggaagcgcgg cagtgcgcgt
      241 gcgccgtgcc cgcgcacccg gcccggagga ggcagccagt ggtcgcccgc gagggtggcg
      301 ggcagccccg gaaacaatct gtgccctcgg tcaccgggag ctggcgaggt gtcctccacg
      361 gtgcagagac ctggaatggc caaatatcaa ggtgaagttc acagtttgaa actggatgat
      421 gattcagtca tagaaggagt aagtgaccaa gtacttgtgg cagttgtggt cagtttcgct
      481 ttgattgcta ccctggtata tgcacttttc agcagaaatg cacatcaaaa cattcaccca
      541 gaaaaccaag agctagtacg ggtgcttcgg gaacaacttc aaacagaaca ggatgcacct
      601 gctgctgccc gacagcagtt ctacactgac atgtactgtc cgatctgttt acatcaagct
      661 tccctccctg ttgaaacaaa ctgtggacat ctcttttgtg gtacctgcat tgtggcgtac
      721 tggcgatacg gttcatggct tggggcaatc agttgtccaa tctgtagaca aacggtaact
      781 ttactgctaa cagtatttgg tgaaaatgac cagtctcagg atgctgtatc attgcatcaa
      841 gatattaatg attataaccg gagattctca gggcagccca gatctattat ggaaagaatt
      901 atggacctac ccactttact gaggcatgca ttcagggagg tgttttcggt cggaggcctt
      961 ttctggatgt tccgtatcag gataatactt tgtttaatgg gggctttttt ctaccttata
     1021 tcgcctctag attttgtgcc tgaagccctg tttggaattc taggctttct cgatgatttc
     1081 tttgtcgtat ttttgttgct catctacatc tctattatgt accgagaagt agtaacacag
     1141 agactcaaca gatgagaaaa tgagtgcact aaaatatttg agccaatgtg taaaatcaaa
     1201 caaaaggacc atggcagttt aaagcatttg aatattatct tacaagttta aaaccactgt
     1261 atgacaaaca tttgtcattt gcaaatgcct agcaatatat gactggaatt tttacatgtt
     1321 gcaggtccca atagtaaggt tagaattata gtgatttaca actgtatctt cattctgtgt
     1381 tgtctataaa gttgtggaaa aatatggaat tatataaaat gggatgcttc tatatcttct
     1441 cccccaccaa actattcagg ttaactggat gtatagtaag gtgttgtcaa atgtacagtt
     1501 tatccaattc atccttctcg gggagtaccc acatgataat atattgctgt gagactcacc
     1561 taagtatttt ggttacaata aaatattgta caatattggg gaaaaatcag tgtttctttg
     1621 agtagctagg ttttgttcat ttggagcagt tctgcttttc cattctgata gaattctttg
     1681 ctaccagctg aaggggaaag aagaaacttg aactttgtta atttgatttt atattctggt
     1741 ttacagaaca cttccttaag tgacaggaga attaacaagt tgtgagacat tggactccag
     1801 ccagcactct tgatattctc agttatggca tttcagtaag agtttggtcc ttttatagga
     1861 acagtatata aaagttactt gtaaagggaa tttttgtttc aggaacctgg gtgatactgc
     1921 agacacataa cagtttggta cattcctgag gaaggtggtt ctccgtagct gtgagcatca
     1981 aagacctgag gagggtacta ggaacactaa atttgacaag agaagttact ggtgagctat
     2041 agcgacagaa tgtacagatc tggttagttt tctcttgtca gaacacttct gtaatactgt
     2101 ccctagatga cagaatatag cccagattca tcaggccttg tgcagaatga gatgattcag
     2161 caggaacgtt atcttggttt ttggatgact acagcataag tacttaacgc tcttttatgc
     2221 aattttctgt ttgagaagaa tcaaaaccgc aagtattatg aaatcttaac tccctcagct
     2281 ggcactgccc ttgagtgacc tggacagcag ggtagtcact gatccccagg gctcaggcag
     2341 tgtcagctct gcgcctggca gccactgcta gtcatcctgt ccacccatgt atcagtgagc
     2401 ctcactgtca gtcttccagg tgaatcagag gccatcaact gatgagatgc tgaatgatac
     2461 atcagtagtg tcttgtaatt tgggcctaag acaaagctgc tgcttgtcac agagaaaaac
     2521 aaaatcctta agtatagcac attgtaatta aagcgatttc ttgcatacca ttcatttaat
     2581 cctcaagaga gttaggtgaa gaagacaggg cattaccttc cttttcatag atgaaatccc
     2641 tgacgtggat gaaacggctt ttttttgtct gaagccatgc acagataagt gaccgaactg
     2701 gtattagact cctaggactc ctacatgggg agaaactggg atcctttgga agacttttgg
     2761 aacatactgg agtaggacag cttgggttct cctaagaaca aaggtttaga aagattacat
     2821 atcaagactc catgaatcct gattcaccat gtccaaatca aacttctcat agggtggcac
     2881 acttcatagg aaaacgtttc agctgcagtc actaacttga gaagctaatg agtaggagtt
     2941 ctttacacca ccatttatca gtctcgaaac gcattgccta ccaattataa atttggtgtg
     3001 gggctacagc aaagccattt ttgaaaggtt ttaattttct gtgcatgtgt tctgcttcaa
     3061 gtgtcacact tacagtactt ttattgtaat atttggaatt ccttctaaga ctttcctggt
     3121 agaggcgtat tgtaccaact tttgtaacat acaaaaacac tgtatgaagt cttactaagt
     3181 tgaaaaggga atatgctgtc ttctcagaag tttagacctg tttactatgt catctttatt
     3241 gatcagtgat aataaatgta gaagggatcc gagagtattt aaagcaagta gagtcaatca
     3301 gtgttttaaa tttttaaaca tcatagtaat acttctgtga ttcagagtta gagcatataa
     3361 atcaaagtaa cagtttggat tttcgtaaac aacaatattg taactttcaa aaaacagatg
     3421 gtccagcccc aggagcagat aacttgggca gctctgtggg gagggagaca gaggaaacag
     3481 ttgttctaac tgtccactag aacagtggtt ccagctgcta cagttctcag cactgaaagt
     3541 aacatgggaa gaaaggactg tgctggtccc tctggctgtg cggataccta cctcacagag
     3601 ctgtttcaga ggactgacag tttggttcaa accttgtgat ttaagagttt gtcaagcagt
     3661 gactcttttg aataaaagca acatatctaa aattaaa
//
LOCUS       XM_032618423            3694 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 170 (RNF170),
            transcript variant X4, mRNA.
ACCESSION   XM_032618423
VERSION     XM_032618423.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3694
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3694
                     /gene="RNF170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746751"
     CDS             376..1152
                     /gene="RNF170"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF170 isoform X2"
                     /protein_id="XP_032474314.1"
                     /db_xref="GeneID:116746751"
                     /translation="MAKYQGEVHSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYAL
                     FRNAHQNIHPENQELVRVLREQLQTEQDAPAAARQQFYTDMYCPICLHQASLPVETNC
                     GHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLTVFGENDQSQDAVSLHQDINDYN
                     RRFSGQPRSIMERIMDLPTLLRHAFREVFSVGGLFWMFRIRIILCLMGAFFYLISPLD
                     FVPEALFGILGFLDDFFVVFLLLIYISIMYREVVTQRLNR"
     misc_feature    625..795
                     /gene="RNF170"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 170 (RNF170) and similar proteins; Region:
                     RING-HC_RNF170; cd16553"
                     /db_xref="CDD:438215"
     misc_feature    982..1092
                     /gene="RNF170"
                     /note="Protein of unknown function (DUF1232); Region:
                     DUF1232; pfam06803"
                     /db_xref="CDD:462011"
ORIGIN      
        1 accggcgccc ctcctcctcc ggcccgtcgg gaccgcgcgg caccgcgcgc gcccgccccg
       61 cccgcggacc tgcagtcccg cagccccgca gccccgctcc cgccgagacc ccagcccggc
      121 ccgagccgca gtagcccagc actgcgcacg gccgcgcccg ccgcccgctg cgtgtcgccc
      181 ccgcgcgctc cccgccggct ggtccccgcc gcgccctcac ggaagcgcgg cagtgcgcgt
      241 gcgccgtgcc cgcgcacccg gcccggagga ggcagccagt ggtcgcccgc gagggtggcg
      301 ggcagccccg gaaacaatct gtgccctcgg tcaccgggag ctggcgaggt gtcctccacg
      361 gtgcagagac ctggaatggc caaatatcaa ggtgaagttc acagtttgaa actggatgat
      421 gattcagtca tagaaggagt aagtgaccaa gtacttgtgg cagttgtggt cagtttcgct
      481 ttgattgcta ccctggtata tgcacttttc agaaatgcac atcaaaacat tcacccagaa
      541 aaccaagagc tagtacgggt gcttcgggaa caacttcaaa cagaacagga tgcacctgct
      601 gctgcccgac agcagttcta cactgacatg tactgtccga tctgtttaca tcaagcttcc
      661 ctccctgttg aaacaaactg tggacatctc ttttgtggta cctgcattgt ggcgtactgg
      721 cgatacggtt catggcttgg ggcaatcagt tgtccaatct gtagacaaac ggtaacttta
      781 ctgctaacag tatttggtga aaatgaccag tctcaggatg ctgtatcatt gcatcaagat
      841 attaatgatt ataaccggag attctcaggg cagcccagat ctattatgga aagaattatg
      901 gacctaccca ctttactgag gcatgcattc agggaggtgt tttcggtcgg aggccttttc
      961 tggatgttcc gtatcaggat aatactttgt ttaatggggg cttttttcta ccttatatcg
     1021 cctctagatt ttgtgcctga agccctgttt ggaattctag gctttctcga tgatttcttt
     1081 gtcgtatttt tgttgctcat ctacatctct attatgtacc gagaagtagt aacacagaga
     1141 ctcaacagat gagaaaatga gtgcactaaa atatttgagc caatgtgtaa aatcaaacaa
     1201 aaggaccatg gcagtttaaa gcatttgaat attatcttac aagtttaaaa ccactgtatg
     1261 acaaacattt gtcatttgca aatgcctagc aatatatgac tggaattttt acatgttgca
     1321 ggtcccaata gtaaggttag aattatagtg atttacaact gtatcttcat tctgtgttgt
     1381 ctataaagtt gtggaaaaat atggaattat ataaaatggg atgcttctat atcttctccc
     1441 ccaccaaact attcaggtta actggatgta tagtaaggtg ttgtcaaatg tacagtttat
     1501 ccaattcatc cttctcgggg agtacccaca tgataatata ttgctgtgag actcacctaa
     1561 gtattttggt tacaataaaa tattgtacaa tattggggaa aaatcagtgt ttctttgagt
     1621 agctaggttt tgttcatttg gagcagttct gcttttccat tctgatagaa ttctttgcta
     1681 ccagctgaag gggaaagaag aaacttgaac tttgttaatt tgattttata ttctggttta
     1741 cagaacactt ccttaagtga caggagaatt aacaagttgt gagacattgg actccagcca
     1801 gcactcttga tattctcagt tatggcattt cagtaagagt ttggtccttt tataggaaca
     1861 gtatataaaa gttacttgta aagggaattt ttgtttcagg aacctgggtg atactgcaga
     1921 cacataacag tttggtacat tcctgaggaa ggtggttctc cgtagctgtg agcatcaaag
     1981 acctgaggag ggtactagga acactaaatt tgacaagaga agttactggt gagctatagc
     2041 gacagaatgt acagatctgg ttagttttct cttgtcagaa cacttctgta atactgtccc
     2101 tagatgacag aatatagccc agattcatca ggccttgtgc agaatgagat gattcagcag
     2161 gaacgttatc ttggtttttg gatgactaca gcataagtac ttaacgctct tttatgcaat
     2221 tttctgtttg agaagaatca aaaccgcaag tattatgaaa tcttaactcc ctcagctggc
     2281 actgcccttg agtgacctgg acagcagggt agtcactgat ccccagggct caggcagtgt
     2341 cagctctgcg cctggcagcc actgctagtc atcctgtcca cccatgtatc agtgagcctc
     2401 actgtcagtc ttccaggtga atcagaggcc atcaactgat gagatgctga atgatacatc
     2461 agtagtgtct tgtaatttgg gcctaagaca aagctgctgc ttgtcacaga gaaaaacaaa
     2521 atccttaagt atagcacatt gtaattaaag cgatttcttg cataccattc atttaatcct
     2581 caagagagtt aggtgaagaa gacagggcat taccttcctt ttcatagatg aaatccctga
     2641 cgtggatgaa acggcttttt tttgtctgaa gccatgcaca gataagtgac cgaactggta
     2701 ttagactcct aggactccta catggggaga aactgggatc ctttggaaga cttttggaac
     2761 atactggagt aggacagctt gggttctcct aagaacaaag gtttagaaag attacatatc
     2821 aagactccat gaatcctgat tcaccatgtc caaatcaaac ttctcatagg gtggcacact
     2881 tcataggaaa acgtttcagc tgcagtcact aacttgagaa gctaatgagt aggagttctt
     2941 tacaccacca tttatcagtc tcgaaacgca ttgcctacca attataaatt tggtgtgggg
     3001 ctacagcaaa gccatttttg aaaggtttta attttctgtg catgtgttct gcttcaagtg
     3061 tcacacttac agtactttta ttgtaatatt tggaattcct tctaagactt tcctggtaga
     3121 ggcgtattgt accaactttt gtaacataca aaaacactgt atgaagtctt actaagttga
     3181 aaagggaata tgctgtcttc tcagaagttt agacctgttt actatgtcat ctttattgat
     3241 cagtgataat aaatgtagaa gggatccgag agtatttaaa gcaagtagag tcaatcagtg
     3301 ttttaaattt ttaaacatca tagtaatact tctgtgattc agagttagag catataaatc
     3361 aaagtaacag tttggatttt cgtaaacaac aatattgtaa ctttcaaaaa acagatggtc
     3421 cagccccagg agcagataac ttgggcagct ctgtggggag ggagacagag gaaacagttg
     3481 ttctaactgt ccactagaac agtggttcca gctgctacag ttctcagcac tgaaagtaac
     3541 atgggaagaa aggactgtgc tggtccctct ggctgtgcgg atacctacct cacagagctg
     3601 tttcagagga ctgacagttt ggttcaaacc ttgtgattta agagtttgtc aagcagtgac
     3661 tcttttgaat aaaagcaaca tatctaaaat taaa
//
LOCUS       XM_032618424            3520 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 170 (RNF170),
            transcript variant X5, mRNA.
ACCESSION   XM_032618424
VERSION     XM_032618424.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3520
                     /gene="RNF170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746751"
     CDS             454..978
                     /gene="RNF170"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF170 isoform X3"
                     /protein_id="XP_032474315.1"
                     /db_xref="GeneID:116746751"
                     /translation="MYCPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPI
                     CRQTVTLLLTVFGENDQSQDAVSLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFR
                     EVFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVVFLLLIYI
                     SIMYREVVTQRLNR"
     misc_feature    454..621
                     /gene="RNF170"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 170 (RNF170) and similar proteins; Region:
                     RING-HC_RNF170; cd16553"
                     /db_xref="CDD:438215"
     misc_feature    <808..>936
                     /gene="RNF170"
                     /note="Uncharacterized membrane protein YkvA, DUF1232
                     family [Function unknown]; Region: YkvA; COG3339"
                     /db_xref="CDD:442568"
ORIGIN      
        1 tgcgcgtgcg ccgtgcccgc gcacccggcc cggaggaggc agccagtggt cgcccgcgag
       61 ggtggcgggc agccccggaa acaatctgtg ccctcggtca ccgggagctg gcgaggtgtc
      121 ctccacggtg cagagattgg cttctttcca aactgaggtg gtggcataat acctcatttt
      181 tgagccagca gcgcctgcag ttcctttttg gactcctgtg ataagaaaaa ctactggcgg
      241 aagttaacta ctgaagcccc gacagacctg gaatggccaa atatcaaggt gaagttcaca
      301 gtttgaaact ggatgatgat tcagtcatag aaggacagaa atgcacatca aaacattcac
      361 ccagaaaacc aagagctagt acgggtgctt cgggaacaac ttcaaacaga acaggatgca
      421 cctgctgctg cccgacagca gttctacact gacatgtact gtccgatctg tttacatcaa
      481 gcttccctcc ctgttgaaac aaactgtgga catctctttt gtggtacctg cattgtggcg
      541 tactggcgat acggttcatg gcttggggca atcagttgtc caatctgtag acaaacggta
      601 actttactgc taacagtatt tggtgaaaat gaccagtctc aggatgctgt atcattgcat
      661 caagatatta atgattataa ccggagattc tcagggcagc ccagatctat tatggaaaga
      721 attatggacc tacccacttt actgaggcat gcattcaggg aggtgttttc ggtcggaggc
      781 cttttctgga tgttccgtat caggataata ctttgtttaa tgggggcttt tttctacctt
      841 atatcgcctc tagattttgt gcctgaagcc ctgtttggaa ttctaggctt tctcgatgat
      901 ttctttgtcg tatttttgtt gctcatctac atctctatta tgtaccgaga agtagtaaca
      961 cagagactca acagatgaga aaatgagtgc actaaaatat ttgagccaat gtgtaaaatc
     1021 aaacaaaagg accatggcag tttaaagcat ttgaatatta tcttacaagt ttaaaaccac
     1081 tgtatgacaa acatttgtca tttgcaaatg cctagcaata tatgactgga atttttacat
     1141 gttgcaggtc ccaatagtaa ggttagaatt atagtgattt acaactgtat cttcattctg
     1201 tgttgtctat aaagttgtgg aaaaatatgg aattatataa aatgggatgc ttctatatct
     1261 tctcccccac caaactattc aggttaactg gatgtatagt aaggtgttgt caaatgtaca
     1321 gtttatccaa ttcatccttc tcggggagta cccacatgat aatatattgc tgtgagactc
     1381 acctaagtat tttggttaca ataaaatatt gtacaatatt ggggaaaaat cagtgtttct
     1441 ttgagtagct aggttttgtt catttggagc agttctgctt ttccattctg atagaattct
     1501 ttgctaccag ctgaagggga aagaagaaac ttgaactttg ttaatttgat tttatattct
     1561 ggtttacaga acacttcctt aagtgacagg agaattaaca agttgtgaga cattggactc
     1621 cagccagcac tcttgatatt ctcagttatg gcatttcagt aagagtttgg tccttttata
     1681 ggaacagtat ataaaagtta cttgtaaagg gaatttttgt ttcaggaacc tgggtgatac
     1741 tgcagacaca taacagtttg gtacattcct gaggaaggtg gttctccgta gctgtgagca
     1801 tcaaagacct gaggagggta ctaggaacac taaatttgac aagagaagtt actggtgagc
     1861 tatagcgaca gaatgtacag atctggttag ttttctcttg tcagaacact tctgtaatac
     1921 tgtccctaga tgacagaata tagcccagat tcatcaggcc ttgtgcagaa tgagatgatt
     1981 cagcaggaac gttatcttgg tttttggatg actacagcat aagtacttaa cgctctttta
     2041 tgcaattttc tgtttgagaa gaatcaaaac cgcaagtatt atgaaatctt aactccctca
     2101 gctggcactg cccttgagtg acctggacag cagggtagtc actgatcccc agggctcagg
     2161 cagtgtcagc tctgcgcctg gcagccactg ctagtcatcc tgtccaccca tgtatcagtg
     2221 agcctcactg tcagtcttcc aggtgaatca gaggccatca actgatgaga tgctgaatga
     2281 tacatcagta gtgtcttgta atttgggcct aagacaaagc tgctgcttgt cacagagaaa
     2341 aacaaaatcc ttaagtatag cacattgtaa ttaaagcgat ttcttgcata ccattcattt
     2401 aatcctcaag agagttaggt gaagaagaca gggcattacc ttccttttca tagatgaaat
     2461 ccctgacgtg gatgaaacgg cttttttttg tctgaagcca tgcacagata agtgaccgaa
     2521 ctggtattag actcctagga ctcctacatg gggagaaact gggatccttt ggaagacttt
     2581 tggaacatac tggagtagga cagcttgggt tctcctaaga acaaaggttt agaaagatta
     2641 catatcaaga ctccatgaat cctgattcac catgtccaaa tcaaacttct catagggtgg
     2701 cacacttcat aggaaaacgt ttcagctgca gtcactaact tgagaagcta atgagtagga
     2761 gttctttaca ccaccattta tcagtctcga aacgcattgc ctaccaatta taaatttggt
     2821 gtggggctac agcaaagcca tttttgaaag gttttaattt tctgtgcatg tgttctgctt
     2881 caagtgtcac acttacagta cttttattgt aatatttgga attccttcta agactttcct
     2941 ggtagaggcg tattgtacca acttttgtaa catacaaaaa cactgtatga agtcttacta
     3001 agttgaaaag ggaatatgct gtcttctcag aagtttagac ctgtttacta tgtcatcttt
     3061 attgatcagt gataataaat gtagaaggga tccgagagta tttaaagcaa gtagagtcaa
     3121 tcagtgtttt aaatttttaa acatcatagt aatacttctg tgattcagag ttagagcata
     3181 taaatcaaag taacagtttg gattttcgta aacaacaata ttgtaacttt caaaaaacag
     3241 atggtccagc cccaggagca gataacttgg gcagctctgt ggggagggag acagaggaaa
     3301 cagttgttct aactgtccac tagaacagtg gttccagctg ctacagttct cagcactgaa
     3361 agtaacatgg gaagaaagga ctgtgctggt ccctctggct gtgcggatac ctacctcaca
     3421 gagctgtttc agaggactga cagtttggtt caaaccttgt gatttaagag tttgtcaagc
     3481 agtgactctt ttgaataaaa gcaacatatc taaaattaaa
//
LOCUS       XM_032618425            3517 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 170 (RNF170),
            transcript variant X6, mRNA.
ACCESSION   XM_032618425
VERSION     XM_032618425.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3517
                     /gene="RNF170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746751"
     CDS             451..975
                     /gene="RNF170"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF170 isoform X3"
                     /protein_id="XP_032474316.1"
                     /db_xref="GeneID:116746751"
                     /translation="MYCPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPI
                     CRQTVTLLLTVFGENDQSQDAVSLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFR
                     EVFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVVFLLLIYI
                     SIMYREVVTQRLNR"
     misc_feature    451..618
                     /gene="RNF170"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 170 (RNF170) and similar proteins; Region:
                     RING-HC_RNF170; cd16553"
                     /db_xref="CDD:438215"
     misc_feature    <805..>933
                     /gene="RNF170"
                     /note="Uncharacterized membrane protein YkvA, DUF1232
                     family [Function unknown]; Region: YkvA; COG3339"
                     /db_xref="CDD:442568"
ORIGIN      
        1 tgcgcgtgcg ccgtgcccgc gcacccggcc cggaggaggc agccagtggt cgcccgcgag
       61 ggtggcgggc agccccggaa acaatctgtg ccctcggtca ccgggagctg gcgaggtgtc
      121 ctccacggtg cagagattgg cttctttcca aactgaggtg gtggcataat acctcatttt
      181 tgagccagca gcgcctgcag ttcctttttg gactcctgtg ataagaaaaa ctactggcgg
      241 aagttaacta ctgaagcccc gacagacctg gaatggccaa atatcaaggt gaagttcaca
      301 gtttgaaact ggatgatgat tcagtcatag aaggaaaatg cacatcaaaa cattcaccca
      361 gaaaaccaag agctagtacg ggtgcttcgg gaacaacttc aaacagaaca ggatgcacct
      421 gctgctgccc gacagcagtt ctacactgac atgtactgtc cgatctgttt acatcaagct
      481 tccctccctg ttgaaacaaa ctgtggacat ctcttttgtg gtacctgcat tgtggcgtac
      541 tggcgatacg gttcatggct tggggcaatc agttgtccaa tctgtagaca aacggtaact
      601 ttactgctaa cagtatttgg tgaaaatgac cagtctcagg atgctgtatc attgcatcaa
      661 gatattaatg attataaccg gagattctca gggcagccca gatctattat ggaaagaatt
      721 atggacctac ccactttact gaggcatgca ttcagggagg tgttttcggt cggaggcctt
      781 ttctggatgt tccgtatcag gataatactt tgtttaatgg gggctttttt ctaccttata
      841 tcgcctctag attttgtgcc tgaagccctg tttggaattc taggctttct cgatgatttc
      901 tttgtcgtat ttttgttgct catctacatc tctattatgt accgagaagt agtaacacag
      961 agactcaaca gatgagaaaa tgagtgcact aaaatatttg agccaatgtg taaaatcaaa
     1021 caaaaggacc atggcagttt aaagcatttg aatattatct tacaagttta aaaccactgt
     1081 atgacaaaca tttgtcattt gcaaatgcct agcaatatat gactggaatt tttacatgtt
     1141 gcaggtccca atagtaaggt tagaattata gtgatttaca actgtatctt cattctgtgt
     1201 tgtctataaa gttgtggaaa aatatggaat tatataaaat gggatgcttc tatatcttct
     1261 cccccaccaa actattcagg ttaactggat gtatagtaag gtgttgtcaa atgtacagtt
     1321 tatccaattc atccttctcg gggagtaccc acatgataat atattgctgt gagactcacc
     1381 taagtatttt ggttacaata aaatattgta caatattggg gaaaaatcag tgtttctttg
     1441 agtagctagg ttttgttcat ttggagcagt tctgcttttc cattctgata gaattctttg
     1501 ctaccagctg aaggggaaag aagaaacttg aactttgtta atttgatttt atattctggt
     1561 ttacagaaca cttccttaag tgacaggaga attaacaagt tgtgagacat tggactccag
     1621 ccagcactct tgatattctc agttatggca tttcagtaag agtttggtcc ttttatagga
     1681 acagtatata aaagttactt gtaaagggaa tttttgtttc aggaacctgg gtgatactgc
     1741 agacacataa cagtttggta cattcctgag gaaggtggtt ctccgtagct gtgagcatca
     1801 aagacctgag gagggtacta ggaacactaa atttgacaag agaagttact ggtgagctat
     1861 agcgacagaa tgtacagatc tggttagttt tctcttgtca gaacacttct gtaatactgt
     1921 ccctagatga cagaatatag cccagattca tcaggccttg tgcagaatga gatgattcag
     1981 caggaacgtt atcttggttt ttggatgact acagcataag tacttaacgc tcttttatgc
     2041 aattttctgt ttgagaagaa tcaaaaccgc aagtattatg aaatcttaac tccctcagct
     2101 ggcactgccc ttgagtgacc tggacagcag ggtagtcact gatccccagg gctcaggcag
     2161 tgtcagctct gcgcctggca gccactgcta gtcatcctgt ccacccatgt atcagtgagc
     2221 ctcactgtca gtcttccagg tgaatcagag gccatcaact gatgagatgc tgaatgatac
     2281 atcagtagtg tcttgtaatt tgggcctaag acaaagctgc tgcttgtcac agagaaaaac
     2341 aaaatcctta agtatagcac attgtaatta aagcgatttc ttgcatacca ttcatttaat
     2401 cctcaagaga gttaggtgaa gaagacaggg cattaccttc cttttcatag atgaaatccc
     2461 tgacgtggat gaaacggctt ttttttgtct gaagccatgc acagataagt gaccgaactg
     2521 gtattagact cctaggactc ctacatgggg agaaactggg atcctttgga agacttttgg
     2581 aacatactgg agtaggacag cttgggttct cctaagaaca aaggtttaga aagattacat
     2641 atcaagactc catgaatcct gattcaccat gtccaaatca aacttctcat agggtggcac
     2701 acttcatagg aaaacgtttc agctgcagtc actaacttga gaagctaatg agtaggagtt
     2761 ctttacacca ccatttatca gtctcgaaac gcattgccta ccaattataa atttggtgtg
     2821 gggctacagc aaagccattt ttgaaaggtt ttaattttct gtgcatgtgt tctgcttcaa
     2881 gtgtcacact tacagtactt ttattgtaat atttggaatt ccttctaaga ctttcctggt
     2941 agaggcgtat tgtaccaact tttgtaacat acaaaaacac tgtatgaagt cttactaagt
     3001 tgaaaaggga atatgctgtc ttctcagaag tttagacctg tttactatgt catctttatt
     3061 gatcagtgat aataaatgta gaagggatcc gagagtattt aaagcaagta gagtcaatca
     3121 gtgttttaaa tttttaaaca tcatagtaat acttctgtga ttcagagtta gagcatataa
     3181 atcaaagtaa cagtttggat tttcgtaaac aacaatattg taactttcaa aaaacagatg
     3241 gtccagcccc aggagcagat aacttgggca gctctgtggg gagggagaca gaggaaacag
     3301 ttgttctaac tgtccactag aacagtggtt ccagctgcta cagttctcag cactgaaagt
     3361 aacatgggaa gaaaggactg tgctggtccc tctggctgtg cggataccta cctcacagag
     3421 ctgtttcaga ggactgacag tttggttcaa accttgtgat ttaagagttt gtcaagcagt
     3481 gactcttttg aataaaagca acatatctaa aattaaa
//
LOCUS       XM_032618427            3300 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 170 (RNF170),
            transcript variant X7, mRNA.
ACCESSION   XM_032618427
VERSION     XM_032618427.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3300
                     /gene="RNF170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746751"
     CDS             234..758
                     /gene="RNF170"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF170 isoform X3"
                     /protein_id="XP_032474318.1"
                     /db_xref="GeneID:116746751"
                     /translation="MYCPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPI
                     CRQTVTLLLTVFGENDQSQDAVSLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFR
                     EVFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVVFLLLIYI
                     SIMYREVVTQRLNR"
     misc_feature    234..401
                     /gene="RNF170"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 170 (RNF170) and similar proteins; Region:
                     RING-HC_RNF170; cd16553"
                     /db_xref="CDD:438215"
     misc_feature    <588..>716
                     /gene="RNF170"
                     /note="Uncharacterized membrane protein YkvA, DUF1232
                     family [Function unknown]; Region: YkvA; COG3339"
                     /db_xref="CDD:442568"
ORIGIN      
        1 gtgccctcgg tcaccgggag ctggcgaggt gtcctccacg gtgcagagac ctggaatggc
       61 caaatatcaa ggtgaagttc acagtttgaa actggatgat gattcagtca tagaaggaaa
      121 atgcacatca aaacattcac ccagaaaacc aagagctagt acgggtgctt cgggaacaac
      181 ttcaaacaga acaggatgca cctgctgctg cccgacagca gttctacact gacatgtact
      241 gtccgatctg tttacatcaa gcttccctcc ctgttgaaac aaactgtgga catctctttt
      301 gtggtacctg cattgtggcg tactggcgat acggttcatg gcttggggca atcagttgtc
      361 caatctgtag acaaacggta actttactgc taacagtatt tggtgaaaat gaccagtctc
      421 aggatgctgt atcattgcat caagatatta atgattataa ccggagattc tcagggcagc
      481 ccagatctat tatggaaaga attatggacc tacccacttt actgaggcat gcattcaggg
      541 aggtgttttc ggtcggaggc cttttctgga tgttccgtat caggataata ctttgtttaa
      601 tgggggcttt tttctacctt atatcgcctc tagattttgt gcctgaagcc ctgtttggaa
      661 ttctaggctt tctcgatgat ttctttgtcg tatttttgtt gctcatctac atctctatta
      721 tgtaccgaga agtagtaaca cagagactca acagatgaga aaatgagtgc actaaaatat
      781 ttgagccaat gtgtaaaatc aaacaaaagg accatggcag tttaaagcat ttgaatatta
      841 tcttacaagt ttaaaaccac tgtatgacaa acatttgtca tttgcaaatg cctagcaata
      901 tatgactgga atttttacat gttgcaggtc ccaatagtaa ggttagaatt atagtgattt
      961 acaactgtat cttcattctg tgttgtctat aaagttgtgg aaaaatatgg aattatataa
     1021 aatgggatgc ttctatatct tctcccccac caaactattc aggttaactg gatgtatagt
     1081 aaggtgttgt caaatgtaca gtttatccaa ttcatccttc tcggggagta cccacatgat
     1141 aatatattgc tgtgagactc acctaagtat tttggttaca ataaaatatt gtacaatatt
     1201 ggggaaaaat cagtgtttct ttgagtagct aggttttgtt catttggagc agttctgctt
     1261 ttccattctg atagaattct ttgctaccag ctgaagggga aagaagaaac ttgaactttg
     1321 ttaatttgat tttatattct ggtttacaga acacttcctt aagtgacagg agaattaaca
     1381 agttgtgaga cattggactc cagccagcac tcttgatatt ctcagttatg gcatttcagt
     1441 aagagtttgg tccttttata ggaacagtat ataaaagtta cttgtaaagg gaatttttgt
     1501 ttcaggaacc tgggtgatac tgcagacaca taacagtttg gtacattcct gaggaaggtg
     1561 gttctccgta gctgtgagca tcaaagacct gaggagggta ctaggaacac taaatttgac
     1621 aagagaagtt actggtgagc tatagcgaca gaatgtacag atctggttag ttttctcttg
     1681 tcagaacact tctgtaatac tgtccctaga tgacagaata tagcccagat tcatcaggcc
     1741 ttgtgcagaa tgagatgatt cagcaggaac gttatcttgg tttttggatg actacagcat
     1801 aagtacttaa cgctctttta tgcaattttc tgtttgagaa gaatcaaaac cgcaagtatt
     1861 atgaaatctt aactccctca gctggcactg cccttgagtg acctggacag cagggtagtc
     1921 actgatcccc agggctcagg cagtgtcagc tctgcgcctg gcagccactg ctagtcatcc
     1981 tgtccaccca tgtatcagtg agcctcactg tcagtcttcc aggtgaatca gaggccatca
     2041 actgatgaga tgctgaatga tacatcagta gtgtcttgta atttgggcct aagacaaagc
     2101 tgctgcttgt cacagagaaa aacaaaatcc ttaagtatag cacattgtaa ttaaagcgat
     2161 ttcttgcata ccattcattt aatcctcaag agagttaggt gaagaagaca gggcattacc
     2221 ttccttttca tagatgaaat ccctgacgtg gatgaaacgg cttttttttg tctgaagcca
     2281 tgcacagata agtgaccgaa ctggtattag actcctagga ctcctacatg gggagaaact
     2341 gggatccttt ggaagacttt tggaacatac tggagtagga cagcttgggt tctcctaaga
     2401 acaaaggttt agaaagatta catatcaaga ctccatgaat cctgattcac catgtccaaa
     2461 tcaaacttct catagggtgg cacacttcat aggaaaacgt ttcagctgca gtcactaact
     2521 tgagaagcta atgagtagga gttctttaca ccaccattta tcagtctcga aacgcattgc
     2581 ctaccaatta taaatttggt gtggggctac agcaaagcca tttttgaaag gttttaattt
     2641 tctgtgcatg tgttctgctt caagtgtcac acttacagta cttttattgt aatatttgga
     2701 attccttcta agactttcct ggtagaggcg tattgtacca acttttgtaa catacaaaaa
     2761 cactgtatga agtcttacta agttgaaaag ggaatatgct gtcttctcag aagtttagac
     2821 ctgtttacta tgtcatcttt attgatcagt gataataaat gtagaaggga tccgagagta
     2881 tttaaagcaa gtagagtcaa tcagtgtttt aaatttttaa acatcatagt aatacttctg
     2941 tgattcagag ttagagcata taaatcaaag taacagtttg gattttcgta aacaacaata
     3001 ttgtaacttt caaaaaacag atggtccagc cccaggagca gataacttgg gcagctctgt
     3061 ggggagggag acagaggaaa cagttgttct aactgtccac tagaacagtg gttccagctg
     3121 ctacagttct cagcactgaa agtaacatgg gaagaaagga ctgtgctggt ccctctggct
     3181 gtgcggatac ctacctcaca gagctgtttc agaggactga cagtttggtt caaaccttgt
     3241 gatttaagag tttgtcaagc agtgactctt ttgaataaaa gcaacatatc taaaattaaa
//
LOCUS       XM_032618428            1928 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PDZ and LIM domain 3 (PDLIM3), transcript
            variant X1, mRNA.
ACCESSION   XM_032618428
VERSION     XM_032618428.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1928
                     /gene="PDLIM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 79% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746752"
     CDS             57..1154
                     /gene="PDLIM3"
                     /codon_start=1
                     /product="PDZ and LIM domain protein 3 isoform X1"
                     /protein_id="XP_032474319.1"
                     /db_xref="GeneID:116746752"
                     /translation="MPQNVVLPGPAPWGFRLSGGIDFNQPLIITRITPGSKAAAANLC
                     PGDVILAIDGFGTESMTHADAQDRIKAAAHQLCLKIDRAETRLWSPQVTEDGKAHPFK
                     INLESEPQDVNYFEHKHNIRPKPFIIPGRSSGCSTPSGIDGGSGRSTPSSVSTLSTIC
                     PGDLKVAAKMAPNIPLEMELPGVKIIHAQFNTPMQLYSDGNIMETLQGQVSTALGETP
                     SMSEPTASPVPPQSDVYRMLHDNRNEPTQPRQSGSFRVLQELVNDGSDDRPAGTRSVR
                     APVTKVPCGAGSTQKMPLCDKCGSGIVGAVVKVRDKHRHPECFVCADCNLNLKQKGYF
                     FVEGELYCETHARARMRPPEGYDTVTLYPKA"
     misc_feature    66..302
                     /gene="PDLIM3"
                     /note="PDZ domain of PDZ-LIM family proteins, and related
                     domains; Region: PDZ_PDLIM-like; cd06753"
                     /db_xref="CDD:467235"
     misc_feature    order(90..110,144..146,153..155,240..242,252..254,
                     261..266)
                     /gene="PDLIM3"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467235"
     misc_feature    606..875
                     /gene="PDLIM3"
                     /note="Domain of unknown function (DUF4749); Region:
                     DUF4749; pfam15936"
                     /db_xref="CDD:464948"
     misc_feature    939..1097
                     /gene="PDLIM3"
                     /note="This family represents the LIM domain of ALP,
                     actinin-associated LIM protein; Region: LIM_ALP; cd09450"
                     /db_xref="CDD:188834"
     misc_feature    order(939..941,948..950,999..1001,1008..1010,1017..1019,
                     1026..1028,1080..1082,1089..1091)
                     /gene="PDLIM3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188834"
ORIGIN      
        1 ccgctcgggg acactcgttg cgcccccgcc ccagaaaggc cgtgccagga ggcaccatgc
       61 cccaaaacgt ggtcctgccg ggccctgcgc cctggggctt cagactctcg gggggcatag
      121 acttcaacca gcccttgatc atcaccagga ttactccagg aagcaaggcg gcagctgcca
      181 acctgtgtcc cggagatgtc atcctggcta ttgatggctt cggtactgag tccatgactc
      241 atgctgatgc acaggacagg attaaagcag cagcacacca gctgtgtctc aaaattgaca
      301 gggcggaaac tcgcttatgg tctccacagg taactgaaga tggaaaggct catcctttca
      361 aaatcaactt agaatcagaa ccacaggatg tgaactactt tgaacacaag cacaatattc
      421 ggcccaaacc tttcataatt ccaggccgaa gcagtggatg cagtactccg tccggtattg
      481 acggtggcag tggacgtagc accccttctt ctgtcagtac tcttagtact atttgcccag
      541 gtgacttgaa agttgctgct aagatggccc ctaacattcc tttggaaatg gaacttcctg
      601 gtgtgaagat tatacatgct cagtttaata cacctatgca gttgtactca gatggcaata
      661 ttatggaaac acttcagggt caggtttcaa cagccctagg ggaaacgccc tcaatgagtg
      721 aacccacggc ctccccagtg cccccccagt cggatgtgta ccggatgctc cacgacaatc
      781 gtaatgaacc tactcagcct cgccagtcag gctccttcag ggtgctccag gaactagtga
      841 acgatggttc agatgaccgt cctgctggaa ctcggagtgt gagagctcca gttacaaaag
      901 tcccatgcgg tgctggcagc acacagaaga tgccactctg tgacaaatgt gggagtggca
      961 ttgttggtgc ggttgtgaag gtgagggaca agcatcggca tccagagtgc ttcgtgtgtg
     1021 ctgactgtaa cctcaacctc aaacaaaagg gctacttctt cgtggagggg gagctgtact
     1081 gcgaaaccca cgcacgggcc cgcatgaggc ccccagaggg ctacgacaca gtcactcttt
     1141 atcccaaagc ttaagtctcc ggcagacgga acatgcactc acccaggcgc accctcacag
     1201 gcagacgtta acggcttggg gtagaagtag agcaaagggc tgactccaaa tctagaacca
     1261 agcttttaga cacttatctc attgtatcct caggagcagg aatgggcgga agatgcctgc
     1321 tctaacagaa acatacattc aactgtattt ctctttggag ctagcaataa cttagtgaaa
     1381 tttagagcaa taatttttat gtcacactct atattttaca tttataatat gaccatcaaa
     1441 catgtaaacg tcaagatttt agggggagtc taattgccct tccttaacca gttgattttg
     1501 caattgcaac ttacgacaaa tgacaatctt gtattctaag acagtcctgc aggtgtctgt
     1561 tatctgtttt aactataata gtgcatgtca gggagaaatt ccctagatct ctctagtttc
     1621 atattcaaac agttatacta ctggatgcag catacataat aaatacataa aacattttta
     1681 aaatacctaa cgaagtggca ctcaatgaat tcagataaaa tcaacattcc aatgagaggg
     1741 cccagtcata tctcgtcgtg tacactaaca actcaggtat tttaagaaaa atgtggcttc
     1801 tttagttttc ataactcatt cactcttctg agcccacagt ttctgctgat aggaggggaa
     1861 ctcttaaatt tgctagttaa aggtgatgca gtctctttca gattaaaaca gtttctgctg
     1921 ctttgaaa
//
LOCUS       XM_032618429            1928 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PDZ and LIM domain 3 (PDLIM3), transcript
            variant X2, mRNA.
ACCESSION   XM_032618429
VERSION     XM_032618429.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1928
                     /gene="PDLIM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 79% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746752"
     CDS             57..1154
                     /gene="PDLIM3"
                     /codon_start=1
                     /product="PDZ and LIM domain protein 3 isoform X2"
                     /protein_id="XP_032474320.1"
                     /db_xref="GeneID:116746752"
                     /translation="MPQNVVLPGPAPWGFRLSGGIDFNQPLIITRITPGSKAAAANLC
                     PGDVILAIDGFGTESMTHADAQDRIKAAAHQLCLKIDRAETRLWSPQVTEDGKAHPFK
                     INLESEPQDVNYFEHKHNIRPKPFIIPGRSSGCSTPSGIDGGSGRSTPSSVSTLSTIC
                     PGDLKVAAKMAPNIPLEMELPGVKIIHAQFNTPMQLYSDGNIMETLQGQVSTALGETP
                     SMSEPTASPVPPQSDVYRMLHDNRNEPTQPRQSGSFRVLQELVNDGPHDRPAGTRSVR
                     APVTKVPCGAGSTQKMPLCDKCGSGIVGAVVKVRDKHRHPECFVCADCNLNLKQKGYF
                     FVEGELYCETHARARMRPPEGYDTVTLYPKA"
     misc_feature    66..302
                     /gene="PDLIM3"
                     /note="PDZ domain of PDZ-LIM family proteins, and related
                     domains; Region: PDZ_PDLIM-like; cd06753"
                     /db_xref="CDD:467235"
     misc_feature    order(90..110,144..146,153..155,240..242,252..254,
                     261..266)
                     /gene="PDLIM3"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467235"
     misc_feature    606..863
                     /gene="PDLIM3"
                     /note="Domain of unknown function (DUF4749); Region:
                     DUF4749; pfam15936"
                     /db_xref="CDD:464948"
     misc_feature    939..1097
                     /gene="PDLIM3"
                     /note="This family represents the LIM domain of ALP,
                     actinin-associated LIM protein; Region: LIM_ALP; cd09450"
                     /db_xref="CDD:188834"
     misc_feature    order(939..941,948..950,999..1001,1008..1010,1017..1019,
                     1026..1028,1080..1082,1089..1091)
                     /gene="PDLIM3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188834"
ORIGIN      
        1 ccgctcgggg acactcgttg cgcccccgcc ccagaaaggc cgtgccagga ggcaccatgc
       61 cccaaaacgt ggtcctgccg ggccctgcgc cctggggctt cagactctcg gggggcatag
      121 acttcaacca gcccttgatc atcaccagga ttactccagg aagcaaggcg gcagctgcca
      181 acctgtgtcc cggagatgtc atcctggcta ttgatggctt cggtactgag tccatgactc
      241 atgctgatgc acaggacagg attaaagcag cagcacacca gctgtgtctc aaaattgaca
      301 gggcggaaac tcgcttatgg tctccacagg taactgaaga tggaaaggct catcctttca
      361 aaatcaactt agaatcagaa ccacaggatg tgaactactt tgaacacaag cacaatattc
      421 ggcccaaacc tttcataatt ccaggccgaa gcagtggatg cagtactccg tccggtattg
      481 acggtggcag tggacgtagc accccttctt ctgtcagtac tcttagtact atttgcccag
      541 gtgacttgaa agttgctgct aagatggccc ctaacattcc tttggaaatg gaacttcctg
      601 gtgtgaagat tatacatgct cagtttaata cacctatgca gttgtactca gatggcaata
      661 ttatggaaac acttcagggt caggtttcaa cagccctagg ggaaacgccc tcaatgagtg
      721 aacccacggc ctccccagtg cccccccagt cggatgtgta ccggatgctc cacgacaatc
      781 gtaatgaacc tactcagcct cgccagtcag gctccttcag ggtgctccag gaactagtga
      841 acgatggccc gcatgaccgt cctgctggaa ctcggagtgt gagagctcca gttacaaaag
      901 tcccatgcgg tgctggcagc acacagaaga tgccactctg tgacaaatgt gggagtggca
      961 ttgttggtgc ggttgtgaag gtgagggaca agcatcggca tccagagtgc ttcgtgtgtg
     1021 ctgactgtaa cctcaacctc aaacaaaagg gctacttctt cgtggagggg gagctgtact
     1081 gcgaaaccca cgcacgggcc cgcatgaggc ccccagaggg ctacgacaca gtcactcttt
     1141 atcccaaagc ttaagtctcc ggcagacgga acatgcactc acccaggcgc accctcacag
     1201 gcagacgtta acggcttggg gtagaagtag agcaaagggc tgactccaaa tctagaacca
     1261 agcttttaga cacttatctc attgtatcct caggagcagg aatgggcgga agatgcctgc
     1321 tctaacagaa acatacattc aactgtattt ctctttggag ctagcaataa cttagtgaaa
     1381 tttagagcaa taatttttat gtcacactct atattttaca tttataatat gaccatcaaa
     1441 catgtaaacg tcaagatttt agggggagtc taattgccct tccttaacca gttgattttg
     1501 caattgcaac ttacgacaaa tgacaatctt gtattctaag acagtcctgc aggtgtctgt
     1561 tatctgtttt aactataata gtgcatgtca gggagaaatt ccctagatct ctctagtttc
     1621 atattcaaac agttatacta ctggatgcag catacataat aaatacataa aacattttta
     1681 aaatacctaa cgaagtggca ctcaatgaat tcagataaaa tcaacattcc aatgagaggg
     1741 cccagtcata tctcgtcgtg tacactaaca actcaggtat tttaagaaaa atgtggcttc
     1801 tttagttttc ataactcatt cactcttctg agcccacagt ttctgctgat aggaggggaa
     1861 ctcttaaatt tgctagttaa aggtgatgca gtctctttca gattaaaaca gtttctgctg
     1921 ctttgaaa
//
LOCUS       XM_032618430            1778 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus PDZ and LIM domain 3 (PDLIM3), transcript
            variant X3, mRNA.
ACCESSION   XM_032618430
VERSION     XM_032618430.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1778
                     /gene="PDLIM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746752"
     CDS             57..1004
                     /gene="PDLIM3"
                     /codon_start=1
                     /product="PDZ and LIM domain protein 3 isoform X3"
                     /protein_id="XP_032474321.1"
                     /db_xref="GeneID:116746752"
                     /translation="MPQNVVLPGPAPWGFRLSGGIDFNQPLIITRITPGSKAAAANLC
                     PGDVILAIDGFGTESMTHADAQDRIKAAAHQLCLKIDRAETRLWSPQVTEDGKAHPFK
                     INLESEPQEFKPIGAGYNRRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALH
                     GQLRGLIPSSPQNEPTASPVPPQSDVYRMLHDNRNEPTQPRQSGSFRVLQELVNDDDR
                     PAGTRSVRAPVTKVPCGAGSTQKMPLCDKCGSGIVGAVVKVRDKHRHPECFVCADCNL
                     NLKQKGYFFVEGELYCETHARARMRPPEGYDTVTLYPKA"
     misc_feature    66..302
                     /gene="PDLIM3"
                     /note="PDZ domain of PDZ-LIM family proteins, and related
                     domains; Region: PDZ_PDLIM-like; cd06753"
                     /db_xref="CDD:467235"
     misc_feature    order(90..110,144..146,153..155,240..242,252..254,
                     261..266)
                     /gene="PDLIM3"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467235"
     misc_feature    465..704
                     /gene="PDLIM3"
                     /note="Domain of unknown function (DUF4749); Region:
                     DUF4749; pfam15936"
                     /db_xref="CDD:464948"
     misc_feature    789..947
                     /gene="PDLIM3"
                     /note="This family represents the LIM domain of ALP,
                     actinin-associated LIM protein; Region: LIM_ALP; cd09450"
                     /db_xref="CDD:188834"
     misc_feature    order(789..791,798..800,849..851,858..860,867..869,
                     876..878,930..932,939..941)
                     /gene="PDLIM3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188834"
ORIGIN      
        1 ccgctcgggg acactcgttg cgcccccgcc ccagaaaggc cgtgccagga ggcaccatgc
       61 cccaaaacgt ggtcctgccg ggccctgcgc cctggggctt cagactctcg gggggcatag
      121 acttcaacca gcccttgatc atcaccagga ttactccagg aagcaaggcg gcagctgcca
      181 acctgtgtcc cggagatgtc atcctggcta ttgatggctt cggtactgag tccatgactc
      241 atgctgatgc acaggacagg attaaagcag cagcacacca gctgtgtctc aaaattgaca
      301 gggcggaaac tcgcttatgg tctccacagg taactgaaga tggaaaggct catcctttca
      361 aaatcaactt agaatcagaa ccacaggagt tcaaacccat tggtgccggg tacaacagaa
      421 gggcccagcc ttttgttgca gcagcaaaca ttgatgacaa aagacaggta gtgagcgctt
      481 cctataactc acccattggg ctctattcaa ccagcaatat acaagatgcg cttcacgggc
      541 agctgcgggg gctcattcct agctcacctc aaaatgaacc cacggcctcc ccagtgcccc
      601 cccagtcgga tgtgtaccgg atgctccacg acaatcgtaa tgaacctact cagcctcgcc
      661 agtcaggctc cttcagggtg ctccaggaac tagtgaacga tgatgaccgt cctgctggaa
      721 ctcggagtgt gagagctcca gttacaaaag tcccatgcgg tgctggcagc acacagaaga
      781 tgccactctg tgacaaatgt gggagtggca ttgttggtgc ggttgtgaag gtgagggaca
      841 agcatcggca tccagagtgc ttcgtgtgtg ctgactgtaa cctcaacctc aaacaaaagg
      901 gctacttctt cgtggagggg gagctgtact gcgaaaccca cgcacgggcc cgcatgaggc
      961 ccccagaggg ctacgacaca gtcactcttt atcccaaagc ttaagtctcc ggcagacgga
     1021 acatgcactc acccaggcgc accctcacag gcagacgtta acggcttggg gtagaagtag
     1081 agcaaagggc tgactccaaa tctagaacca agcttttaga cacttatctc attgtatcct
     1141 caggagcagg aatgggcgga agatgcctgc tctaacagaa acatacattc aactgtattt
     1201 ctctttggag ctagcaataa cttagtgaaa tttagagcaa taatttttat gtcacactct
     1261 atattttaca tttataatat gaccatcaaa catgtaaacg tcaagatttt agggggagtc
     1321 taattgccct tccttaacca gttgattttg caattgcaac ttacgacaaa tgacaatctt
     1381 gtattctaag acagtcctgc aggtgtctgt tatctgtttt aactataata gtgcatgtca
     1441 gggagaaatt ccctagatct ctctagtttc atattcaaac agttatacta ctggatgcag
     1501 catacataat aaatacataa aacattttta aaatacctaa cgaagtggca ctcaatgaat
     1561 tcagataaaa tcaacattcc aatgagaggg cccagtcata tctcgtcgtg tacactaaca
     1621 actcaggtat tttaagaaaa atgtggcttc tttagttttc ataactcatt cactcttctg
     1681 agcccacagt ttctgctgat aggaggggaa ctcttaaatt tgctagttaa aggtgatgca
     1741 gtctctttca gattaaaaca gtttctgctg ctttgaaa
//
LOCUS       XM_032618431            1116 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sarcoglycan zeta (SGCZ), mRNA.
ACCESSION   XM_032618431
VERSION     XM_032618431.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1116
                     /gene="SGCZ"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 14 Proteins, and 12%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746753"
     CDS             104..1042
                     /gene="SGCZ"
                     /codon_start=1
                     /product="zeta-sarcoglycan"
                     /protein_id="XP_032474322.1"
                     /db_xref="GeneID:116746753"
                     /translation="MDRSTNLDIEELKMTREQYILATQQNNLPRAENAQLYPVGIYGW
                     RKRCLYFFVLLLLVTMIVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLP
                     LYVKEIHSRKDSPLVLQSDRNVTVNARNHMGQLTGQLTVGADAVEAQCKRFEVRASED
                     GRVLFSADEDGITIGAEKLKVTGTEGAVFGHSVETPHIRAEPSQDLRLESPTRSLIME
                     APRGVQVSAAAGDFKAACRKELHLQSTEGEIFLNAATIRLGNLPTGSPSSSSPSPSHS
                     RQTVHELCVCPNGKLYLSPAGAGSTCQSSSNICLWS"
     misc_feature    215..1000
                     /gene="SGCZ"
                     /note="Sarcoglycan complex subunit protein; Region:
                     Sarcoglycan_1; pfam04790"
                     /db_xref="CDD:461428"
ORIGIN      
        1 ggcttggagg aggataaagc tgagtttagg ctggaaacta aaagactgac tgttttttgg
       61 tacaacttgc ccggtctctc ttcacttcct ttagtttcgc ttcatggaca gatcaacaaa
      121 cctggacatt gaggaactca agatgacacg agaacagtac atactagcaa cacaacaaaa
      181 taacctgcca agggctgaga atgcacaact ttacccagtg ggaatttatg gatggcgaaa
      241 gaggtgctta tacttctttg tccttctgct gttggttacc atgatagtta acttagccat
      301 gacaatttgg atattgaaag tgatgaactt caccgtggat ggtatgggaa atctgagagt
      361 caccaagaag ggaatccgac ttgaaggtat atctgagttt ctacttccat tgtatgtgaa
      421 agaaattcat tcccgaaagg atagtccact ggtcttacag tctgacagga atgtaacagt
      481 gaatgcaaga aatcacatgg ggcagttaac tggacagctg acagtaggag ctgatgctgt
      541 ggaagctcag tgtaaaagat ttgaagtgag ggccagtgaa gatggcaggg tgctgttttc
      601 tgcagatgaa gatgggatta ccattggggc tgaaaagctg aaagttacag gcactgaagg
      661 agcagtgttc gggcactctg ttgaaacacc tcacatcaga gcagaacctt cccaagacct
      721 caggcttgaa tcaccaacca ggtccttgat aatggaagct ccccgggggg tccaggtgag
      781 tgccgcagct ggagacttca aggctgcctg caggaaggag ctccacttgc agtccacaga
      841 gggggagata tttttgaatg cggctacaat ccggctggga aacctgccaa ccggctctcc
      901 ttcctcttct tcacccagcc cctcccactc tcggcagaca gtgcacgaac tgtgtgtctg
      961 ccccaacggc aaactgtacc tgtctccagc tggggccggg tctacctgtc agtccagtag
     1021 caacatctgc ttgtggagtt gaactgactg atttctcctc acaccagaat agccttttgt
     1081 tcccgtacgt ctccttcaca gttctgctcc gtttcc
//
LOCUS       XR_004347861             165 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746754
            (LOC116746754), ncRNA.
ACCESSION   XR_004347861
VERSION     XR_004347861.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..165
                     /gene="LOC116746754"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746754"
     ncRNA           1..165
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746754"
                     /product="uncharacterized LOC116746754"
                     /db_xref="GeneID:116746754"
ORIGIN      
        1 gcttaaaaat acattaacaa gggactttgc tggtggcacg gtgattaaga atccgcccgc
       61 cagtgcaggg gacacaggtc tgagccctgg tccaagaaga tcccacatgc cgcggagcaa
      121 cttagcccat gcgccacaac tactgaccct gcactctagg gcccg
//
LOCUS       XM_032618432            2959 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus general transcription factor IIE subunit
            2 (GTF2E2), transcript variant X1, mRNA.
ACCESSION   XM_032618432
VERSION     XM_032618432.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2959
                     /gene="GTF2E2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 1
                     Protein, and 40% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116746755"
     CDS             201..1130
                     /gene="GTF2E2"
                     /codon_start=1
                     /product="transcription initiation factor IIE subunit beta
                     isoform X1"
                     /protein_id="XP_032474323.1"
                     /db_xref="GeneID:116746755"
                     /translation="MDPSLLRERELFKKRALSTPVVEKRSVSSESSSSSSKKKKAKLE
                     HGGSSGSKQNSDHNNGSFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEI
                     LDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLDKHDQ
                     RGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEGSGR
                     TGSAAMAYGLTAPRHVGSSRTGARTRVPCIGRRTLNHCTTREALKKFCYYRIFFLCYT
                     TYPCCLSILYVVVFVSLNPIPATCPSPLPSPHW"
     misc_feature    402..638
                     /gene="GTF2E2"
                     /note="TFIIE_beta_winged_helix domain, located at the
                     central core region of TFIIE beta, with double-stranded
                     DNA binding activity; Region: TFIIE_beta_winged_helix;
                     cd07977"
                     /db_xref="CDD:153423"
     misc_feature    636..812
                     /gene="GTF2E2"
                     /note="TFA2 Winged helix domain 2; Region: TFA2_Winged_2;
                     pfam18121"
                     /db_xref="CDD:465658"
ORIGIN      
        1 tgagctccga acccgcggat caggaagtgg cgggcggagc ccgtggccga gtagccgcct
       61 gagacgccgc cgccgccgcc agtgcggaga cccccgacct ggcggggtag cgctgggcgt
      121 gcgtgcgggc gagcgggggc gctgacgacg agcaggaggc ggcggccggg ctcgtggggc
      181 ggccctcctg gctcagcatt atggatccaa gtctcttgag agaacgggag ctgttcaaaa
      241 aacgagctct ttccactcct gtagtagaaa aacgttctgt atcttctgag tcatcttcat
      301 catcatcaaa gaagaagaaa gcgaagctag aacatggagg atcatcaggc tctaaacaaa
      361 attctgatca taacaatgga tcatttaact tgaaagctct atcaggaagc tctggatata
      421 agtttggtgt tcttgctaag attgtgaatt acatgaagac acggcatcag cgaggagata
      481 cacatcctct tactttagaa gaaattttgg atgaaacaca acatttagat attggactca
      541 agcagaaaca atggctaatg actgaggcat tagtcaataa tcccaaaatt gaagtaatag
      601 atggaaagta tgccttcaag cccaagtaca acttgaaaga taagaaggcc ctacttcggc
      661 ttttagataa gcatgaccag cgaggcttag gaggaattct tttagaagac attgaagaag
      721 gactgcccaa ttcccagaaa gctgtcaagg ctttagggga ccagatacta tttgtaaacc
      781 gtcctgataa gaagaaaatt cttttcttca atgataagag ctgtcagttt tctgtggatg
      841 aaggctccgg acgcacaggc tcagcggcca tggcttatgg gctcaccgct ccacggcacg
      901 tgggatcctc ccggaccggg gcacgaaccc gtgtcccctg catcggcagg cggactctca
      961 accactgcac caccagggaa gccctaaaaa aattttgtta ttatagaatt ttttttctgt
     1021 gctacacaac atacccttgt tgcttatcta ttttatatgt agtagttttt gtatctctta
     1081 atcccatccc cgcaacttgc ccttctcctc ttccctcccc ccactggtaa ccactagttt
     1141 gcttgctata tctgtgggtc tgtttctgtt ttcttatatt cattcgtttt attgttttag
     1201 atttcacata taagtgatat catacagtct ttatctttct ctttgtctta cttcatttag
     1261 cacaataccc tccaggtcca tccatgtggt tgcaaatggc attatttcat tctttttatg
     1321 gctgagtagt attccattgt atatatgtac cacatcttct ttattcatct gctgatggac
     1381 acttaggttg cttccatatc ttggctgttg taaatagtgc tgctgtgact atcggggtgc
     1441 acatatcttt ttgaattagt gtttcatttt ctttggatat acacccagga gtggaattgt
     1501 tgggtcacat ggtagtcata tttttagttt tttgaggaac ctccatactg ttttccttag
     1561 cggctgtgcc aagttacatt ctcacaaaca ctgtacaagg gttccctttt ctccatatcc
     1621 ttaacaacat ttgttattcg tcatcttttg atgacagcca tgctgacagg tgtgaggtta
     1681 tgtcttattg tattttcctg acgattagag atgttgagca tcttttcatg tgcctgttgg
     1741 ccacctgtat gtcttctttg gaaaaatgtc tattcaagct tctggtcatt ttttaatcag
     1801 gttgtttatt tttttgatat tgagttgata gagttgtatg aaccatttat atattttgga
     1861 tgttaacccc ttatctgtca tattatttgc aagtattttc tcccacttgg tatgttgtct
     1921 tttcattttg tcagtggttt ccttggctgt acaaaatctt ttaagtttaa ttaggtctca
     1981 tttgtttatt ttttatttat ttttttaaca tctttattgg agtataattg ctttacattg
     2041 ttgtgttagt tgctgctgta taacaaagtg aatcaggagg gcagacagca gaagcaagaa
     2101 gaactataat cctgcatcct gtggaacaaa aaccacattc acagaaagat aaacaagatg
     2161 aaaaggcaga gggctatgta ccagatgaag gaacaagata aacccccaga aaaacaacta
     2221 aatgaagtgg agataggcaa ccttccagaa aaagaattca gaataatgat agtgaagatg
     2281 atccaggacc ttggaaaaag agtggaggca aagatcaaga agttgcaaga aatgtttaac
     2341 aaagacctag aagaattaaa gaacagggct tccctggtgg cacaatggtt gagagtctgc
     2401 ctgccgatgc aggggacgtg ggtttttgcc ccagtctggg aagatcccac atgccatgga
     2461 gcggctggac ccgtgactcg tggccactga gcctgcgcgt ccggagcctg tgctctgaac
     2521 gggagaggcc acagcagtga gaggccctca taccaaaaaa acaaaacaaa acaaacacct
     2581 agaagaatta aagaacaaac aaagatgaac agtacaataa ctgaaatgaa aaatacacga
     2641 gaaggaatca atagcagaag aatggataag tgacctggaa gacagaatgg tggaattcac
     2701 tggcgtggaa caggataaag aaaaaagaat gaaaagaaga cagcctgaga gacctttggg
     2761 acaacattaa atgcaacagc attcgcatta taggggtccc agaaggagaa gagagaaagg
     2821 acccgagaaa atatttgaag agattatagt cgaacacttc cctaacatgg gaaatgaaat
     2881 agccacccaa gtccaggaag cgcagagagg cccaggcagt agaaacccaa ggagaaacac
     2941 gccgagacac atagtaatc
//
LOCUS       XM_032618433            1465 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus general transcription factor IIE subunit
            2 (GTF2E2), transcript variant X2, mRNA.
ACCESSION   XM_032618433
VERSION     XM_032618433.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1465
                     /gene="GTF2E2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746755"
     CDS             196..1071
                     /gene="GTF2E2"
                     /codon_start=1
                     /product="transcription initiation factor IIE subunit beta
                     isoform X2"
                     /protein_id="XP_032474324.1"
                     /db_xref="GeneID:116746755"
                     /translation="MDPSLLRERELFKKRALSTPVVEKRSVSSESSSSSSKKKKAKLE
                     HGGSSGSKQNSDHNNGSFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEI
                     LDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLDKHDQ
                     RGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQK
                     LWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKMAPIQRRKKPASQKKRRFKTHNEH
                     LAGVLKDYSDITPGK"
     misc_feature    397..633
                     /gene="GTF2E2"
                     /note="TFIIE_beta_winged_helix domain, located at the
                     central core region of TFIIE beta, with double-stranded
                     DNA binding activity; Region: TFIIE_beta_winged_helix;
                     cd07977"
                     /db_xref="CDD:153423"
     misc_feature    631..807
                     /gene="GTF2E2"
                     /note="TFA2 Winged helix domain 2; Region: TFA2_Winged_2;
                     pfam18121"
                     /db_xref="CDD:465658"
ORIGIN      
        1 tccgaacccg cggatcagga agtggcgggc ggagcccgtg gccgagtagc cgcctgagac
       61 gccgccgccg ccgccagtgc ggagaccccc gacctggcgg ggtagcgctg ggcgtgcgtg
      121 cgggcgagcg ggggcgctga cgacgagcag gaggcggcgg ccgggctcgt ggggcggccc
      181 tcctggctca gcattatgga tccaagtctc ttgagagaac gggagctgtt caaaaaacga
      241 gctctttcca ctcctgtagt agaaaaacgt tctgtatctt ctgagtcatc ttcatcatca
      301 tcaaagaaga agaaagcgaa gctagaacat ggaggatcat caggctctaa acaaaattct
      361 gatcataaca atggatcatt taacttgaaa gctctatcag gaagctctgg atataagttt
      421 ggtgttcttg ctaagattgt gaattacatg aagacacggc atcagcgagg agatacacat
      481 cctcttactt tagaagaaat tttggatgaa acacaacatt tagatattgg actcaagcag
      541 aaacaatggc taatgactga ggcattagtc aataatccca aaattgaagt aatagatgga
      601 aagtatgcct tcaagcccaa gtacaacttg aaagataaga aggccctact tcggctttta
      661 gataagcatg accagcgagg cttaggagga attcttttag aagacattga agaaggactg
      721 cccaattccc agaaagctgt caaggcttta ggggaccaga tactatttgt aaaccgtcct
      781 gataagaaga aaattctttt cttcaatgat aagagctgtc agttttctgt ggatgaagag
      841 tttcagaaac tgtggaggag tgtcactgtg gattcaatgg atgaggagaa aattgaagag
      901 tatctgaagc ggcagggtat ttcttccatg caggaatctg gaccaaagaa aatggctcct
      961 attcagagaa ggaaaaagcc agcttcacag aaaaagcgac ggtttaaaac tcacaatgag
     1021 cacttggccg gggtgctgaa ggactactct gacatcactc ctggcaagta gtggacagtt
     1081 ttgtctgaga gcaaagagtt acaaagtcaa gatcttcctt gttgacgctg ggatctgaag
     1141 actgaccgtc ttcccattct acttcttagg accgaggaca ggagcagttc agtttacaga
     1201 actagtgcaa attaccaaac ttgaagctta ttttcattaa tgggctaatg agaaatgtta
     1261 tgtcccctgt taacctcctt cttgggggaa aggcgctcag catggcatgc aggtgacttt
     1321 gctatttatc tctacttcta agtggttcct ggttccattt tccttttcat taccttagaa
     1381 caggtttgcc gatagtcttg aatgcagtat ttgtttattc caaaagagca tatttataat
     1441 aaaatcgttg tagaaggagc tctga
//
LOCUS       XM_032618435            2928 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RNA binding protein, mRNA processing
            factor (RBPMS), transcript variant X1, mRNA.
ACCESSION   XM_032618435
VERSION     XM_032618435.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2928
                     /gene="RBPMS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746757"
     CDS             343..1032
                     /gene="RBPMS"
                     /codon_start=1
                     /product="RNA-binding protein with multiple splicing
                     isoform X1"
                     /protein_id="XP_032474326.1"
                     /db_xref="GeneID:116746757"
                     /translation="MNNGSKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLF
                     RPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKAN
                     TKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAP
                     ALPPAFTYPASLHAQMPWSNSESPLCLWPTPAIWGYVTHLFLCCLDTDQLTTEANVNN
                     TMKWCQVCLVF"
     misc_feature    409..636
                     /gene="RBPMS"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     RNA-binding protein with multiple splicing (RBP-MS);
                     Region: RRM_RBPMS; cd12682"
                     /db_xref="CDD:410083"
     misc_feature    <532..897
                     /gene="RBPMS"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; Region: PABP-1234; TIGR01628"
                     /db_xref="CDD:130689"
ORIGIN      
        1 ctcactcctg ggacgcgcgt cctcgcccca tcctttcttc ctttctcccc tcgcgcccgc
       61 ccgccctctc caggtctccc tctcgggtcc cgattgtctc cgtccccttc tcggtccgcc
      121 ggcgcctcgc cctgccccgt ctctccctcg cacttcctga gtcgcccgcc gccgctgtct
      181 cgccgcgccg cgggagcccg agcccgagcc cgagccgagc cgagccgcgc cgccgctgcc
      241 ccggctccag cccccgcagc gcccggggaa gggaaaagtg ggcgagcgcg ccctcgccca
      301 gccccgcgcc ccagccctgc ccggcgaggg aggaccggga agatgaacaa cggcagcaaa
      361 gccgagaagg agaacacccc gaacgaggcc aaccttcagg aggaagaggt ccggactctc
      421 tttgtcagtg gtctccctct ggatatcaaa cctcgggagc tgtatctgct tttcagacca
      481 tttaagggct acgagggttc tcttataaag ctcacatcta agcagcccgt aggttttgtc
      541 agttttgaca gtcgctcaga agcagaagct gcaaagaatg ctttgaatgg catccgcttc
      601 gatcctgaaa ttccacaaac actacgacta gagtttgcta aggcaaacac gaagatggcc
      661 aagaacaaac tagtagggac tccaaaccct agcactcctc tgcccaacac tgtacctcag
      721 ttcattgcca gagagccata tgagctcaca gtgcctgcac tttaccccag tagccctgaa
      781 gtgtgggccc cgtaccctct gtacccagcg gagctagcgc ctgctctacc tcctgctttc
      841 acctaccccg cctcactgca tgcccagatg ccgtggagca actcagaaag tcccctgtgt
      901 ttgtggccca cccctgccat ctggggatat gtgacccacc tcttcctgtg ctgcctagat
      961 acagaccaat tgacaacgga ggcaaatgtt aataatacca tgaaatggtg ccaagtttgc
     1021 ctagtcttct aaatacccgt ggctttggtt aatcagtacc aaagcctttc accactgtcc
     1081 tggaaaagca ggagttgaca gtggccagaa aggactgcga atggcggctt ttggccgtga
     1141 tgtctgggta atttgccctt gcttcattca tataacggat gaaatcaaaa gtcattctgg
     1201 ggaatacggt gggagaagga gggtaaaaag tcttaagaga tcagaaagcc caggccattg
     1261 tgagaaagga tgaggagaga cagtgccaag attacatgga ctcaaccgtt acgcttattt
     1321 aactgggatg tatcgcccat ggtggcacct tccccgtgag ctcttccttg accttgaggc
     1381 tctcccagcc aggaatccac ctggtcctgc cacatcagtc ctacagttgg tgggactctc
     1441 ttctgatacc agtgagatcc ttgtgctcaa ccccactgct tatttggggt cattcccagt
     1501 gcaagcttgg gttctgtatc ctaaagactg atgaacaaat atggtcattt aaatgtcttt
     1561 gtccagtgtg agaatcgtag aatgaactgg gagaggcttg acagatcagc tggtctgacc
     1621 cattttacag atgaggaaac agactggaga agaggagaga gttgtccaga gtcgcaagtg
     1681 gctctgccat gaccagagcc agctcacctg actcccagct ctttccacac ctcagtgctg
     1741 gctcaccaaa gactaattct ttgatggaat tttggaaagg ccttgctcca gtgactcctt
     1801 ggatctttct cctgtaacta gatgggaagc ctgtaagaag agacttggag acagagacga
     1861 gggaatcaga acttaacctt cacccagagg gcctgagaga atttttatta actggaggta
     1921 gagcagaggg gagaccaaaa tggagcgtcc tcttagtggc taattccatt tttgttttgg
     1981 aaatcgtatt atgtctttgg agatcagctt ttaaataatt ttgcttttct tagtgatgtt
     2041 gtgctctgtt ttgagacgtg gatttttttt ttcttctagt gtttctctcc tgaggcaaag
     2101 cccaacacac ctgtcttttg tccacttctc cagcaaatta gatttgtctc tgggaatgtg
     2161 tttgtaacat atcaacctac tgcagaccag cagagggagc tcccatgttg aatttgcttg
     2221 ttagctcttt cttccccctt ttgcaaaaac tatttcttgg taacatttga gatttcaata
     2281 aaaattttaa ttagagaaaa aacgatctca agtagactgc agcgttttgt tttcatgctg
     2341 atgcgatttt ggagctaaga tgttatctca gattttggga gacctgggcc cgtgacactc
     2401 ggtatacctt atatgcgaga aggactcagc atcccaggga gacttggtcc agagccgagg
     2461 cctcactgct gctcatatct tcttgggctc ctgaaccctc aagagctgcc tattggaaga
     2521 ttctcattct agcatccatg tgtcacatct gccaggagat ctcgcttcaa cgagggtaga
     2581 agtgttttca gtctgtgtga tccagaagga ggacccagga gagacagaaa ttgtcgtcga
     2641 aaaggagttg cgtcatattt ctacgtctgc ccagcttcca cctgtggtcg tgtgcctccg
     2701 tctctaaact gaagatgctt atgtgacatc aattttaaag aattattgga taacgtaatc
     2761 ggactgtaag cttcagtact gccttcttac ttttagggat gaaagaacat ctgtttctaa
     2821 gagcatccga tttctaagaa gatggttcac attgtaagca atgatcatcc agcttacttt
     2881 caccgtcatg gtatttgaag tttattaaat atattatgtg agtcactg
//
LOCUS       XM_032618436            1278 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RNA binding protein, mRNA processing
            factor (RBPMS), transcript variant X2, mRNA.
ACCESSION   XM_032618436
VERSION     XM_032618436.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1278
                     /gene="RBPMS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746757"
     CDS             527..1183
                     /gene="RBPMS"
                     /codon_start=1
                     /product="RNA-binding protein with multiple splicing
                     isoform X2"
                     /protein_id="XP_032474327.1"
                     /db_xref="GeneID:116746757"
                     /translation="MNNGSKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLF
                     RPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKAN
                     TKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAP
                     ALPPAFTYPASLHAQCFSPEAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
                     "
     misc_feature    593..820
                     /gene="RBPMS"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     RNA-binding protein with multiple splicing (RBP-MS);
                     Region: RRM_RBPMS; cd12682"
                     /db_xref="CDD:410083"
     misc_feature    <602..>1156
                     /gene="RBPMS"
                     /note="ELAV/HuD family splicing factor; Region:
                     ELAV_HUD_SF; TIGR01661"
                     /db_xref="CDD:273741"
ORIGIN      
        1 tctcagagcc agccaggagc gcgcactcag cggctctccg ggtcccagcc gcgccccgtt
       61 gacccgcacc tccttctcct cctgctcctc tccgggtacc cctcgccccc tccctccagc
      121 agctgctacg ctcgggcagc ggccgccccc ggcccctact cggccacatc cccaactctc
      181 tgggctcact cctgggacgc gcgtcctcgc cccatccttt cttcctttct cccctcgcgc
      241 ccgcccgccc tctccaggtc tccctctcgg gtcccgattg tctccgtccc cttctcggtc
      301 cgccggcgcc tcgccctgcc ccgtctctcc ctcgcacttc ctgagtcgcc cgccgccgct
      361 gtctcgccgc gccgcgggag cccgagcccg agcccgagcc gagccgagcc gcgccgccgc
      421 tgccccggct ccagcccccg cagcgcccgg ggaagggaaa agtgggcgag cgcgccctcg
      481 cccagccccg cgccccagcc ctgcccggcg agggaggacc gggaagatga acaacggcag
      541 caaagccgag aaggagaaca ccccgaacga ggccaacctt caggaggaag aggtccggac
      601 tctctttgtc agtggtctcc ctctggatat caaacctcgg gagctgtatc tgcttttcag
      661 accatttaag ggctacgagg gttctcttat aaagctcaca tctaagcagc ccgtaggttt
      721 tgtcagtttt gacagtcgct cagaagcaga agctgcaaag aatgctttga atggcatccg
      781 cttcgatcct gaaattccac aaacactacg actagagttt gctaaggcaa acacgaagat
      841 ggccaagaac aaactagtag ggactccaaa ccctagcact cctctgccca acactgtacc
      901 tcagttcatt gccagagagc catatgagct cacagtgcct gcactttacc ccagtagccc
      961 tgaagtgtgg gccccgtacc ctctgtaccc agcggagcta gcgcctgctc tacctcctgc
     1021 tttcacctac cccgcctcac tgcatgccca gtgtttctct cctgaggcaa agcccaacac
     1081 acctgtcttt tgtccacttc tccagcaaat tagatttgtc tctgggaatg tgtttgtaac
     1141 atatcaacct actgcagacc agcagaggga gctcccatgt tgaatttgct tgttagctct
     1201 ttcttccccc ttttgcaaaa actatttctt ggtaacattt gagatttcaa taaaaatttt
     1261 aattagagaa aaaacgat
//
LOCUS       XM_032618437            1451 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RNA binding protein, mRNA processing
            factor (RBPMS), transcript variant X3, mRNA.
ACCESSION   XM_032618437
VERSION     XM_032618437.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1451
                     /gene="RBPMS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746757"
     CDS             343..948
                     /gene="RBPMS"
                     /codon_start=1
                     /product="RNA-binding protein with multiple splicing
                     isoform X3"
                     /protein_id="XP_032474328.1"
                     /db_xref="GeneID:116746757"
                     /translation="MNNGSKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLF
                     RPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKAN
                     TKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAP
                     ALPPAFTYPASLHAQMRKQTGEEERVVQSRKWLCHDQSQLT"
     misc_feature    409..636
                     /gene="RBPMS"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     RNA-binding protein with multiple splicing (RBP-MS);
                     Region: RRM_RBPMS; cd12682"
                     /db_xref="CDD:410083"
     misc_feature    <532..>879
                     /gene="RBPMS"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; Region: PABP-1234; TIGR01628"
                     /db_xref="CDD:130689"
ORIGIN      
        1 ctcactcctg ggacgcgcgt cctcgcccca tcctttcttc ctttctcccc tcgcgcccgc
       61 ccgccctctc caggtctccc tctcgggtcc cgattgtctc cgtccccttc tcggtccgcc
      121 ggcgcctcgc cctgccccgt ctctccctcg cacttcctga gtcgcccgcc gccgctgtct
      181 cgccgcgccg cgggagcccg agcccgagcc cgagccgagc cgagccgcgc cgccgctgcc
      241 ccggctccag cccccgcagc gcccggggaa gggaaaagtg ggcgagcgcg ccctcgccca
      301 gccccgcgcc ccagccctgc ccggcgaggg aggaccggga agatgaacaa cggcagcaaa
      361 gccgagaagg agaacacccc gaacgaggcc aaccttcagg aggaagaggt ccggactctc
      421 tttgtcagtg gtctccctct ggatatcaaa cctcgggagc tgtatctgct tttcagacca
      481 tttaagggct acgagggttc tcttataaag ctcacatcta agcagcccgt aggttttgtc
      541 agttttgaca gtcgctcaga agcagaagct gcaaagaatg ctttgaatgg catccgcttc
      601 gatcctgaaa ttccacaaac actacgacta gagtttgcta aggcaaacac gaagatggcc
      661 aagaacaaac tagtagggac tccaaaccct agcactcctc tgcccaacac tgtacctcag
      721 ttcattgcca gagagccata tgagctcaca gtgcctgcac tttaccccag tagccctgaa
      781 gtgtgggccc cgtaccctct gtacccagcg gagctagcgc ctgctctacc tcctgctttc
      841 acctaccccg cctcactgca tgcccagatg aggaaacaga ctggagaaga ggagagagtt
      901 gtccagagtc gcaagtggct ctgccatgac cagagccagc tcacctgact cccagctctt
      961 tccacacctc agtgctggct caccaaagac taattctttg atggaatttt ggaaaggcct
     1021 tgctccagtg actccttgga tctttctcct gtaactagat gggaagcctg taagaagaga
     1081 cttggagaca gagacgaggg aatcagaact taaccttcac ccagagggcc tgagagaatt
     1141 tttattaact ggaggtagag cagaggggag accaaaatgg agcgtcctct tagtggctaa
     1201 ttccattttt gttttggaaa tcgtattatg tctttggaga tcagctttta aataattttg
     1261 cttttcttag tgatgttgtg ctctgttttg agacgtggat tttttttttc ttctagtgtt
     1321 tctctcctga ggcaaagccc aacacacctg tcttttgtcc acttctccag caaattagat
     1381 ttgtctctgg gaatgtgttt gtaacatatc aacctactgc agaccagcag agggagctcc
     1441 catgttgaat t
//
LOCUS       XM_032618438            1333 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RNA binding protein, mRNA processing
            factor (RBPMS), transcript variant X4, mRNA.
ACCESSION   XM_032618438
VERSION     XM_032618438.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1333
                     /gene="RBPMS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746757"
     CDS             524..1111
                     /gene="RBPMS"
                     /codon_start=1
                     /product="RNA-binding protein with multiple splicing
                     isoform X4"
                     /protein_id="XP_032474329.1"
                     /db_xref="GeneID:116746757"
                     /translation="MNNGSKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLF
                     RPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKAN
                     TKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAP
                     ALPPAFTYPASLHAQMRWLPPSEATSQGWKSRQFC"
     misc_feature    590..817
                     /gene="RBPMS"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     RNA-binding protein with multiple splicing (RBP-MS);
                     Region: RRM_RBPMS; cd12682"
                     /db_xref="CDD:410083"
     misc_feature    <713..>1054
                     /gene="RBPMS"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; Region: PABP-1234; TIGR01628"
                     /db_xref="CDD:130689"
ORIGIN      
        1 cagagccagc caggagcgcg cactcagcgg ctctccgggt cccagccgcg ccccgttgac
       61 ccgcacctcc ttctcctcct gctcctctcc gggtacccct cgccccctcc ctccagcagc
      121 tgctacgctc gggcagcggc cgcccccggc ccctactcgg ccacatcccc aactctctgg
      181 gctcactcct gggacgcgcg tcctcgcccc atcctttctt cctttctccc ctcgcgcccg
      241 cccgccctct ccaggtctcc ctctcgggtc ccgattgtct ccgtcccctt ctcggtccgc
      301 cggcgcctcg ccctgccccg tctctccctc gcacttcctg agtcgcccgc cgccgctgtc
      361 tcgccgcgcc gcgggagccc gagcccgagc ccgagccgag ccgagccgcg ccgccgctgc
      421 cccggctcca gcccccgcag cgcccgggga agggaaaagt gggcgagcgc gccctcgccc
      481 agccccgcgc cccagccctg cccggcgagg gaggaccggg aagatgaaca acggcagcaa
      541 agccgagaag gagaacaccc cgaacgaggc caaccttcag gaggaagagg tccggactct
      601 ctttgtcagt ggtctccctc tggatatcaa acctcgggag ctgtatctgc ttttcagacc
      661 atttaagggc tacgagggtt ctcttataaa gctcacatct aagcagcccg taggttttgt
      721 cagttttgac agtcgctcag aagcagaagc tgcaaagaat gctttgaatg gcatccgctt
      781 cgatcctgaa attccacaaa cactacgact agagtttgct aaggcaaaca cgaagatggc
      841 caagaacaaa ctagtaggga ctccaaaccc tagcactcct ctgcccaaca ctgtacctca
      901 gttcattgcc agagagccat atgagctcac agtgcctgca ctttacccca gtagccctga
      961 agtgtgggcc ccgtaccctc tgtacccagc ggagctagcg cctgctctac ctcctgcttt
     1021 cacctacccc gcctcactgc atgcccagat gcgctggctc cctccctccg aggctacttc
     1081 tcagggctgg aagtcccgtc agttctgctg aatcccatgt tccaggtgtg tgatggtggc
     1141 tgcaatctgt cttgtgggtc ttaacgcaat cttcaagtgg ctcctgttct cgagctgttc
     1201 tacaaaactg gagcgcgctg gctggaaccc gcccagtttt ggtcccttca agactctgcc
     1261 acagcctcta tcacacatct gtttttctcg aagaaaaaaa tacaataaaa atgttttact
     1321 cttttacact gta
//
LOCUS       XM_032618439            1024 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus RNA binding protein, mRNA processing
            factor (RBPMS), transcript variant X5, mRNA.
ACCESSION   XM_032618439
VERSION     XM_032618439.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1024
                     /gene="RBPMS"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746757"
     CDS             343..855
                     /gene="RBPMS"
                     /codon_start=1
                     /product="RNA-binding protein with multiple splicing
                     isoform X5"
                     /protein_id="XP_032474330.1"
                     /db_xref="GeneID:116746757"
                     /translation="MNNGSKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLF
                     RPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKAN
                     TKMAKNKLVGTPNPSTPLPNTVPQFIAREPYALAPSLRGYFSGLEVPSVLLNPMFQVC
                     DGGCNLSCGS"
     misc_feature    409..636
                     /gene="RBPMS"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     RNA-binding protein with multiple splicing (RBP-MS);
                     Region: RRM_RBPMS; cd12682"
                     /db_xref="CDD:410083"
ORIGIN      
        1 ctcactcctg ggacgcgcgt cctcgcccca tcctttcttc ctttctcccc tcgcgcccgc
       61 ccgccctctc caggtctccc tctcgggtcc cgattgtctc cgtccccttc tcggtccgcc
      121 ggcgcctcgc cctgccccgt ctctccctcg cacttcctga gtcgcccgcc gccgctgtct
      181 cgccgcgccg cgggagcccg agcccgagcc cgagccgagc cgagccgcgc cgccgctgcc
      241 ccggctccag cccccgcagc gcccggggaa gggaaaagtg ggcgagcgcg ccctcgccca
      301 gccccgcgcc ccagccctgc ccggcgaggg aggaccggga agatgaacaa cggcagcaaa
      361 gccgagaagg agaacacccc gaacgaggcc aaccttcagg aggaagaggt ccggactctc
      421 tttgtcagtg gtctccctct ggatatcaaa cctcgggagc tgtatctgct tttcagacca
      481 tttaagggct acgagggttc tcttataaag ctcacatcta agcagcccgt aggttttgtc
      541 agttttgaca gtcgctcaga agcagaagct gcaaagaatg ctttgaatgg catccgcttc
      601 gatcctgaaa ttccacaaac actacgacta gagtttgcta aggcaaacac gaagatggcc
      661 aagaacaaac tagtagggac tccaaaccct agcactcctc tgcccaacac tgtacctcag
      721 ttcattgcca gagagccata tgcgctggct ccctccctcc gaggctactt ctcagggctg
      781 gaagtcccgt cagttctgct gaatcccatg ttccaggtgt gtgatggtgg ctgcaatctg
      841 tcttgtgggt cttaacgcaa tcttcaagtg gctcctgttc tcgagctgtt ctacaaaact
      901 ggagcgcgct ggctggaacc cgcccagttt tggtcccttc aagactctgc cacagcctct
      961 atcacacatc tgtttttctc gaagaaaaaa atacaataaa aatgttttac tcttttacac
     1021 tgta
//
LOCUS       XM_032618440            2862 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus unc-5 netrin receptor D (UNC5D), mRNA.
ACCESSION   XM_032618440
VERSION     XM_032618440.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2862
                     /gene="UNC5D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 Proteins, and 65%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746758"
     CDS             1..2862
                     /gene="UNC5D"
                     /codon_start=1
                     /product="netrin receptor UNC5D"
                     /protein_id="XP_032474331.1"
                     /db_xref="GeneID:116746758"
                     /translation="MRRAAAARGGAGGARRWLPWLGLCFWAAGAAAARGTDNGEVLPE
                     SIPSAPGTLPHFIEEPGDAYIIKSNPIALRCKARPAMQIFFKCNGEWVHQDEHVSEES
                     LDESSGLKVREVFINITRQQVEDFHGPEDYWCQCVAWSHLGTSKSRKASVRIAYLRKN
                     FEQDPQGREVPIEGMIVLHCRPPEGVPAAEVEWLKNEEPIDSEQDENIDTRADHNLII
                     RQARLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRS
                     RTCTNPAPLNGGAFCEGMSVQKITCTSLCPVDGSWEVWGEWSVCSPECQHLRIRECTA
                     PAPRNGGKFCEGLSQESENCTDGLCILDKKPLHEIKPQSIENASDIALYSGLGAAVVA
                     VTVLVVGITLYRRSQSDYGVDVIDSSALTGGFQTFNFKTVRQGNSLLLNSSMQPDLTV
                     SRTYSGPICLQDPLDKELMTESSLFNPLSDIKVKVQSSFMVSLGVSERAEYHGKNHSG
                     TFPHGNNRSFTTVHPRNKTPYVQNLSSLPTRTELRTTGVFGHLGGRLVMPNTGVSLLI
                     PHGAIPEENSWEIYMSINQGEPSLQSDGSEVLLSPEVTCGPPDMTVTTPFALTIPHCA
                     DVSSEHWNIHLKKRTQQGKWEEVMSVEDESTSCYCLLDPFACYVLLDSFGTYALTGEP
                     ITDCAVKQLKVAVFGCMSCNSLDYNLRVYCVDNTPCAFQEVVSDERHQGGQLLEEPKL
                     LHFKGNTFSLQISVLDIPPFLWRIKPFTACQEVPFSRVWCGNRQPLHCAFSLERYTPT
                     TTQLSCKICIRQLKGHEQILQVQTSILENERETITFFAQEDSTFPAQTGPKAFKIPYS
                     IRQRICATFDTPNAKGKDWQMLAQKNSINRNLSYFATQSSPSAVILNLWEARHQHDGD
                     LDSLACALEEIGRTHTKLSNIKESQLDEANFSYSRQNGL"
     misc_feature    160..465
                     /gene="UNC5D"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    211..225
                     /gene="UNC5D"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    244..258
                     /gene="UNC5D"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    319..333
                     /gene="UNC5D"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    376..414
                     /gene="UNC5D"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    439..450
                     /gene="UNC5D"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    487..747
                     /gene="UNC5D"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    526..540
                     /gene="UNC5D"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    568..582
                     /gene="UNC5D"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    640..654
                     /gene="UNC5D"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    682..699
                     /gene="UNC5D"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    724..735
                     /gene="UNC5D"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    763..918
                     /gene="UNC5D"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
     misc_feature    931..1077
                     /gene="UNC5D"
                     /note="Thrombospondin type 1 repeats; Region: TSP1;
                     smart00209"
                     /db_xref="CDD:214559"
     misc_feature    1630..1917
                     /gene="UNC5D"
                     /note="ZU5 domain; Region: ZU5; pfam00791"
                     /db_xref="CDD:459941"
     misc_feature    2059..2478
                     /gene="UNC5D"
                     /note="UPA domain; Region: UPA; pfam17217"
                     /db_xref="CDD:465384"
     misc_feature    2557..2850
                     /gene="UNC5D"
                     /note="Death domain found in Uncoordinated-5D; Region:
                     Death_UNC5D; cd08801"
                     /db_xref="CDD:176779"
     misc_feature    order(2656..2661,2665..2670,2698..2700,2707..2712,
                     2719..2724)
                     /gene="UNC5D"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:176779"
ORIGIN      
        1 atgcggagag cggccgccgc aagaggaggc gctggagggg cgcgccggtg gctcccttgg
       61 ctggggctct gcttctgggc ggcgggggct gcggctgccc gaggaactga caatggcgaa
      121 gtcctccctg aatccatccc atcagctcct gggacactgc ctcatttcat agaggagcca
      181 ggcgatgctt atatcatcaa gagcaacccc attgcactga ggtgcaaagc aaggccagcc
      241 atgcagatat tcttcaaatg caatggcgag tgggtccatc aagatgagca tgtctctgag
      301 gagagtctgg acgagagttc aggcctgaag gtccgggagg tgtttatcaa catcaccagg
      361 cagcaggtag aggacttcca tgggcccgag gactattggt gccagtgtgt ggcgtggagc
      421 cacctgggga cctccaagag caggaaggcc tccgtgcgca tagcctattt acggaaaaac
      481 ttcgagcaag acccgcaggg aagggaggtt cccatcgaag gcatgattgt gctgcactgc
      541 cgcccgcctg agggagttcc tgctgctgag gtggaatggc tgaaaaacga ggagcccatt
      601 gactctgaac aagatgagaa cattgacacc agggcagacc acaacctcat catccggcag
      661 gcgcggctct cggactccgg aaactataca tgcatggcgg ccaacatcgt agccaagagg
      721 aggagcctgt cagccacagt ggtggtttat gtgaatggag gctggtcttc ctggacagag
      781 tggtcagcct gcaatgttcg ctgtggtaga ggatggcaga aacgttcccg gacctgcacc
      841 aacccagctc ctctcaatgg tggagccttt tgtgagggaa tgtcagtgca gaaaataacc
      901 tgcacctctc tttgtcctgt ggacgggagc tgggaggtgt ggggagagtg gtccgtctgc
      961 agcccagagt gtcagcatct gcggatccgc gagtgcacag ccccggcccc aagaaatggg
     1021 ggcaaattct gcgaaggcct aagccaggaa tccgagaact gcacagatgg tctctgcatc
     1081 ctagataaaa aacctcttca tgaaataaaa ccccaaagca ttgagaatgc cagcgacatc
     1141 gctttgtact caggcttggg cgctgcggtc gtggccgtca cagtcctggt cgtcggcatc
     1201 acgctttaca gacggagcca gagtgactac ggcgtggacg tcatcgactc ttctgcattg
     1261 acaggtggct tccagacctt caacttcaaa acagtccgtc aaggtaactc cctgctcttg
     1321 aattcctcca tgcaaccaga cctaacagta agccgaacat acagtgggcc catctgtcta
     1381 caggaccccc tggacaagga actcatgacg gagtcctcac tctttaaccc tttgtcggac
     1441 atcaaagtca aagtgcagag ctcattcatg gtttccctgg gagtgtctga gagagctgag
     1501 taccacggca agaatcattc cgggactttt ccccatggaa acaaccgcag cttcactaca
     1561 gtgcatccca gaaataaaac accctacgtc caaaatctgt catcacttcc tacaaggaca
     1621 gaactgagga ccactggtgt ctttggccat ttaggaggac gcttggtaat gccaaataca
     1681 ggggtgagtt tactgatacc acatggcgcc atcccggagg agaattcttg ggagatttac
     1741 atgtccatca accaaggtga acccagcctc cagtcagatg gctctgaggt gctcctgagt
     1801 ccggaagtca cctgtggtcc ccccgacatg actgtcacca ctccctttgc cctgaccatt
     1861 ccacattgtg cagacgtcag ttctgagcac tggaatatcc atttgaagaa gaggacccag
     1921 cagggcaagt gggaggaagt gatgtcggtg gaggatgaat ccacatcctg ttactgcctt
     1981 ttggacccct ttgcgtgcta cgtgctccta gacagctttg gaacatacgc cctcactgga
     2041 gaaccaatca cagactgtgc cgtgaagcag ctcaaggttg cggtttttgg ctgcatgtcc
     2101 tgtaactctc tggactacaa cttgagggtc tactgtgtgg acaatacccc ttgtgcattt
     2161 caggaagtgg tttcagatga aaggcatcaa ggcggacaac tcctggaaga accaaagttg
     2221 ctgcatttca aagggaatac ctttagtctt cagatctctg tccttgatat ccccccattc
     2281 ctctggagaa ttaaaccatt cactgcatgc caggaagtcc cattctcccg cgtgtggtgc
     2341 ggtaaccggc agcccctgca ctgtgccttc tccctggaac gctacacgcc caccaccacc
     2401 cagctgtcct gcaaaatctg catccggcag ctcaaaggcc atgaacagat cctccaagtg
     2461 cagacgtcaa tccttgagaa tgaaagagag accatcactt tctttgcgca agaggacagc
     2521 actttccctg cgcagactgg ccccaaagcc ttcaaaattc cctactccat cagacagcgg
     2581 atttgtgcta catttgacac ccccaatgcc aaaggcaaag actggcagat gttagcacag
     2641 aaaaacagca tcaacaggaa tttatcttat tttgctacac aaagtagccc gtctgctgtc
     2701 attctgaacc tgtgggaagc tcgtcatcag catgatggtg accttgactc cctggcctgt
     2761 gcccttgaag agattgggag gacacacacg aaactctcga acattaagga atcccagctg
     2821 gatgaagcca acttcagcta cagcaggcaa aatggactct ag
//
LOCUS       XM_032618442            3644 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microcephalin 1 (MCPH1), transcript
            variant X1, mRNA.
ACCESSION   XM_032618442
VERSION     XM_032618442.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3644
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3644
                     /gene="MCPH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746759"
     CDS             43..2238
                     /gene="MCPH1"
                     /codon_start=1
                     /product="microcephalin"
                     /protein_id="XP_032474333.1"
                     /db_xref="GeneID:116746759"
                     /translation="MAAPGTLGGPVLKDVVAYVEVWSASGTENYSKTFTNQLADMGAK
                     VSKTFNKQVTHVVFKDGYQSTWAKARKRGVKLVSVLWVEKCRTAGVHIDESLFPAADP
                     SEHLPSLMKKKRKCMQPKDFIPKTPENDKRLQKKFEKMAKELQQQKTTADNDVPVLLF
                     ESNGSLVYSPTVKICSGRHSAMEKRLQEMKEKRENLSPTSSQIVEKSDDNAVNSLCEA
                     SLNLSHDSLCSEDSFAGVLHLSFDDLCGSSGCGTQQRKLGGFLDESKSAACASSAVLK
                     TRSVRPPASPGSLGQLTLHQSPGSLSKGDTHRQGVAAGQVITPDVKPAREPAEGVFDE
                     KRGLSPTPSVTKEPAGGPSCPQSPSATRRRVSANSSPPPEERLSKRRSLRWLPAPRLQ
                     LESSPKCASSSAVETLGRGESSYDDYFSPDNLKERDSESLLPGVQPPAGPALLHCMRS
                     LSRRERTSLLERADFSCIGRSPRSAGGTDSTVKAGFRLQKPANYGADPGLSSVTSKET
                     PAAEGTPGDCPRAEARGGEDARPGGSDSPHTLNGLTPQKGLRGDFTSLKGSNKEVEGW
                     IDIKSTQKEDTPSKMVNSPEGEAQSDDKLNFVGDWDVEKSAEAMEELPRGCSESVKRG
                     PTRHDVLDGSWEGFRDLVRPHEESRKREKGQKPTRTLVMTSMPSEKQNVVNQVVDKLK
                     GFSLAGEACGCPTHVLARKPRRTQNVLWRIASGCWILSFEQEKWSSCYL"
     misc_feature    82..318
                     /gene="MCPH1"
                     /note="first (N-terminal) BRCT domain of microcephalin and
                     similar proteins; Region: BRCT_microcephalin_rpt1;
                     cd17716"
                     /db_xref="CDD:349348"
     misc_feature    733..1896
                     /gene="MCPH1"
                     /note="Microcephalin protein; Region: Microcephalin;
                     pfam12258"
                     /db_xref="CDD:463511"
     misc_feature    2017..2220
                     /gene="MCPH1"
                     /note="second BRCT domain of microcephalin and similar
                     proteins; Region: BRCT_microcephalin_rpt2; cd17736"
                     /db_xref="CDD:349368"
ORIGIN      
        1 caggctcgcg gctcagcagc ggcgagctgc ccgccgcccc tcatggcggc acccgggacc
       61 cttgggggcc ccgtcctgaa agatgttgtg gcgtatgtag aagtgtggtc agccagtgga
      121 acagaaaatt attcaaagac atttacaaat caacttgcgg acatgggggc aaaggtttca
      181 aaaactttca acaaacaagt aactcacgtc gtgttcaaag acgggtacca gagcacctgg
      241 gccaaagcgc ggaagagagg cgtgaagctc gtctcagtgc tctgggttga aaaatgcagg
      301 acagctggag tgcacatcga tgaatcgctg ttccctgcag ctgatcccag tgagcaccta
      361 ccaagcctaa tgaaaaaaaa acgcaagtgt atgcagccca aagattttat tcctaaaaca
      421 ccagaaaatg ataaaagact gcaaaagaag tttgagaaaa tggctaaaga gctgcagcag
      481 cagaagacca ctgcggataa tgatgttcct gttctcttgt ttgaatctaa tggctccttg
      541 gtgtacagtc ccacagttaa aatctgcagt ggccgccaca gtgcaatgga gaagagactg
      601 caggagatga aggagaaacg ggagaatctt tcccccacct cttcccagat cgttgaaaag
      661 tctgacgata acgccgttaa ctctctgtgt gaagcatctt tgaacctttc acatgattct
      721 ttgtgttcag aggactcctt tgctggtgtt ctacacttgt cttttgatga tctttgtggg
      781 agctctggat gtgggactca gcagaggaaa ttgggaggat tccttgatga aagtaaaagc
      841 gctgcgtgtg cttcctcagc tgtgttgaaa acgagaagtg tccgtccgcc agcatctccc
      901 ggctcccttg gtcagttaac ccttcaccag tcccccggca gtctttccaa gggagacacc
      961 caccggcagg gggttgctgc gggccaagtc atcacccccg acgtgaagcc agcacgggag
     1021 ccggctgagg gggtgtttga tgagaagagg ggcctgtctc ctacgccatc tgtaacgaag
     1081 gagcccgccg ggggcccttc atgtccccag agcccctcag ccacaagaag aagggtgtcg
     1141 gcgaactcca gtccaccccc ggaggagaga ctgagcaaga ggcggtccct caggtggctc
     1201 cctgcgcccc ggctacagct ggagagcagc ccgaagtgcg caagcagctc tgccgtggag
     1261 actctgggcc gcggggagtc ctcgtacgat gattactttt ctcccgataa cctcaaggag
     1321 agggactcgg agagcctcct tcccggggtg cagccgcccg ccggccctgc cctgctccac
     1381 tgcatgagga gcctttccag gagagagagg accagcctcc tggaaagggc tgacttctcc
     1441 tgcatcggca gaagccccag gtcagccggt ggtaccgact caacggtgaa ggctggcttc
     1501 cgtctccaga agcctgcaaa ctacggagct gatccgggct tgagcagcgt gacttctaag
     1561 gaaacgcctg ctgctgaagg aaccccaggg gactgtcccc gggccgaggc tcggggaggg
     1621 gaagacgccc gcccgggcgg gagtgactct ccccataccc tcaatggact cactcctcag
     1681 aagggacttc gaggtgattt tacttctttg aaaggaagca ataaagaagt ggaaggatgg
     1741 attgacataa aaagcacaca gaaagaagat actccttcta aaatggtgaa ttcccctgaa
     1801 ggtgaagcac aaagtgatga taagctaaac tttgtaggcg actgggatgt ggaaaagtct
     1861 gcagaggcaa tggaagagtt accccgagga tgtagtgaaa gtgttaaaag aggaccaaca
     1921 aggcatgatg ttttggatgg ctcatgggaa ggcttcaggg atctcgtcag acctcatgag
     1981 gaatcaagga agagagagaa aggccagaag ccaacaagaa cattagtcat gacaagcatg
     2041 ccatctgaaa agcagaacgt ggtcaaccag gttgtggata aactgaaggg cttctccttg
     2101 gctggggagg cgtgtggctg ccccacgcac gtgctcgcca ggaagccccg ccgcacccag
     2161 aacgtgctgt ggcgcatcgc aagcggctgc tggattctct cctttgaaca ggagaagtgg
     2221 agctcgtgtt atttatgaag atgtttggac ctctcattta gctacactgg tggaatgctg
     2281 ggtcaccctg ctctctgctc agcagggtgt aaaaagtagc taaccatgag cagtgaagct
     2341 ctgaaatcca agaatcatcc gttttcattt ctgcagcctg aaaagatgga gtaaagcata
     2401 agcggaacaa atctcacttg aatgcctgcg tgtgatatag ccagacttgt ttgtaagaag
     2461 gtactgtggt ctttggaaat gggtcattgg atttccgagg aaccgtttga agagtcagac
     2521 tacctccctg cagctcctct acagaccccc cacctaaagg tgggtgtgtt gacttaatct
     2581 ccaccttggc taccctgctg aacgaggcat cacctggaaa aagtgcagca cggtgcttgt
     2641 taacacagtt ggatgagcaa accttgaggt gagagaaaag cagttctgct gccaggagcg
     2701 cctctcgtct gccgggcggt accggggagc cctgtttgcc gaccagccga ccatgttcat
     2761 taccccggcc agcggcccgc tcagagccaa gctgggggag ctggtcgtgc tgtgtggggt
     2821 ctgggtcacg cacatccctc gccaggccag catcttcatc ggccccgtcc caagaaagaa
     2881 ggcggcgaca gtcacgtacc tgtcggaaag gtggacctta gactcagtca ctcagcacaa
     2941 ggtctttgcc tcagagaacc gcccggtgct gccgtgaagg agacaccgct caacccgtgg
     3001 ctgctgctaa cagcccgtcc cggcgtcctc ggacgctcaa gtgaggggag gggtggacgc
     3061 aggaaggatg cctttctcca ccgtcacgtc tgccgcctgt gtgtttcatg tgaagaaagc
     3121 tcctttgtgt ggctttctga tgcctgaaaa caaaggagct ggtctgcatt aatcatgaag
     3181 aaacaaaaat cagaacaaat tgatgaggtg tctgagaata aaccactggc agagtttctc
     3241 agagcactga gagggacctt ctggcccagg gtcaccagca gtgctgactg ctgagccact
     3301 tcagaggacc aaagcaggac ccctgggagg agtgatgagt taaccctaaa gtttggcatc
     3361 tctcagctct gccctttcaa gggaatgcag tgctcctgga tgtgccagtg agggtgaaac
     3421 cggtattcta cgctgatctt tgggaaggaa aggaaaacaa gggtatttac tgtgaagcat
     3481 taaaaaatta gatccaaagc atgaaactaa agcaaaatgt gtaaacagcc acctctccat
     3541 gaaatagctc tattttacag aacgtatcat tctgtatttg tagaggatca atgtaggttg
     3601 ataactaaaa taaataccaa gcttatgtct cctctgtgtt tata
//
LOCUS       XM_032618443            3035 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microcephalin 1 (MCPH1), transcript
            variant X2, mRNA.
ACCESSION   XM_032618443
VERSION     XM_032618443.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3035
                     /gene="MCPH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746759"
     CDS             43..2238
                     /gene="MCPH1"
                     /codon_start=1
                     /product="microcephalin"
                     /protein_id="XP_032474334.1"
                     /db_xref="GeneID:116746759"
                     /translation="MAAPGTLGGPVLKDVVAYVEVWSASGTENYSKTFTNQLADMGAK
                     VSKTFNKQVTHVVFKDGYQSTWAKARKRGVKLVSVLWVEKCRTAGVHIDESLFPAADP
                     SEHLPSLMKKKRKCMQPKDFIPKTPENDKRLQKKFEKMAKELQQQKTTADNDVPVLLF
                     ESNGSLVYSPTVKICSGRHSAMEKRLQEMKEKRENLSPTSSQIVEKSDDNAVNSLCEA
                     SLNLSHDSLCSEDSFAGVLHLSFDDLCGSSGCGTQQRKLGGFLDESKSAACASSAVLK
                     TRSVRPPASPGSLGQLTLHQSPGSLSKGDTHRQGVAAGQVITPDVKPAREPAEGVFDE
                     KRGLSPTPSVTKEPAGGPSCPQSPSATRRRVSANSSPPPEERLSKRRSLRWLPAPRLQ
                     LESSPKCASSSAVETLGRGESSYDDYFSPDNLKERDSESLLPGVQPPAGPALLHCMRS
                     LSRRERTSLLERADFSCIGRSPRSAGGTDSTVKAGFRLQKPANYGADPGLSSVTSKET
                     PAAEGTPGDCPRAEARGGEDARPGGSDSPHTLNGLTPQKGLRGDFTSLKGSNKEVEGW
                     IDIKSTQKEDTPSKMVNSPEGEAQSDDKLNFVGDWDVEKSAEAMEELPRGCSESVKRG
                     PTRHDVLDGSWEGFRDLVRPHEESRKREKGQKPTRTLVMTSMPSEKQNVVNQVVDKLK
                     GFSLAGEACGCPTHVLARKPRRTQNVLWRIASGCWILSFEQEKWSSCYL"
     misc_feature    82..318
                     /gene="MCPH1"
                     /note="first (N-terminal) BRCT domain of microcephalin and
                     similar proteins; Region: BRCT_microcephalin_rpt1;
                     cd17716"
                     /db_xref="CDD:349348"
     misc_feature    733..1896
                     /gene="MCPH1"
                     /note="Microcephalin protein; Region: Microcephalin;
                     pfam12258"
                     /db_xref="CDD:463511"
     misc_feature    2017..2220
                     /gene="MCPH1"
                     /note="second BRCT domain of microcephalin and similar
                     proteins; Region: BRCT_microcephalin_rpt2; cd17736"
                     /db_xref="CDD:349368"
ORIGIN      
        1 caggctcgcg gctcagcagc ggcgagctgc ccgccgcccc tcatggcggc acccgggacc
       61 cttgggggcc ccgtcctgaa agatgttgtg gcgtatgtag aagtgtggtc agccagtgga
      121 acagaaaatt attcaaagac atttacaaat caacttgcgg acatgggggc aaaggtttca
      181 aaaactttca acaaacaagt aactcacgtc gtgttcaaag acgggtacca gagcacctgg
      241 gccaaagcgc ggaagagagg cgtgaagctc gtctcagtgc tctgggttga aaaatgcagg
      301 acagctggag tgcacatcga tgaatcgctg ttccctgcag ctgatcccag tgagcaccta
      361 ccaagcctaa tgaaaaaaaa acgcaagtgt atgcagccca aagattttat tcctaaaaca
      421 ccagaaaatg ataaaagact gcaaaagaag tttgagaaaa tggctaaaga gctgcagcag
      481 cagaagacca ctgcggataa tgatgttcct gttctcttgt ttgaatctaa tggctccttg
      541 gtgtacagtc ccacagttaa aatctgcagt ggccgccaca gtgcaatgga gaagagactg
      601 caggagatga aggagaaacg ggagaatctt tcccccacct cttcccagat cgttgaaaag
      661 tctgacgata acgccgttaa ctctctgtgt gaagcatctt tgaacctttc acatgattct
      721 ttgtgttcag aggactcctt tgctggtgtt ctacacttgt cttttgatga tctttgtggg
      781 agctctggat gtgggactca gcagaggaaa ttgggaggat tccttgatga aagtaaaagc
      841 gctgcgtgtg cttcctcagc tgtgttgaaa acgagaagtg tccgtccgcc agcatctccc
      901 ggctcccttg gtcagttaac ccttcaccag tcccccggca gtctttccaa gggagacacc
      961 caccggcagg gggttgctgc gggccaagtc atcacccccg acgtgaagcc agcacgggag
     1021 ccggctgagg gggtgtttga tgagaagagg ggcctgtctc ctacgccatc tgtaacgaag
     1081 gagcccgccg ggggcccttc atgtccccag agcccctcag ccacaagaag aagggtgtcg
     1141 gcgaactcca gtccaccccc ggaggagaga ctgagcaaga ggcggtccct caggtggctc
     1201 cctgcgcccc ggctacagct ggagagcagc ccgaagtgcg caagcagctc tgccgtggag
     1261 actctgggcc gcggggagtc ctcgtacgat gattactttt ctcccgataa cctcaaggag
     1321 agggactcgg agagcctcct tcccggggtg cagccgcccg ccggccctgc cctgctccac
     1381 tgcatgagga gcctttccag gagagagagg accagcctcc tggaaagggc tgacttctcc
     1441 tgcatcggca gaagccccag gtcagccggt ggtaccgact caacggtgaa ggctggcttc
     1501 cgtctccaga agcctgcaaa ctacggagct gatccgggct tgagcagcgt gacttctaag
     1561 gaaacgcctg ctgctgaagg aaccccaggg gactgtcccc gggccgaggc tcggggaggg
     1621 gaagacgccc gcccgggcgg gagtgactct ccccataccc tcaatggact cactcctcag
     1681 aagggacttc gaggtgattt tacttctttg aaaggaagca ataaagaagt ggaaggatgg
     1741 attgacataa aaagcacaca gaaagaagat actccttcta aaatggtgaa ttcccctgaa
     1801 ggtgaagcac aaagtgatga taagctaaac tttgtaggcg actgggatgt ggaaaagtct
     1861 gcagaggcaa tggaagagtt accccgagga tgtagtgaaa gtgttaaaag aggaccaaca
     1921 aggcatgatg ttttggatgg ctcatgggaa ggcttcaggg atctcgtcag acctcatgag
     1981 gaatcaagga agagagagaa aggccagaag ccaacaagaa cattagtcat gacaagcatg
     2041 ccatctgaaa agcagaacgt ggtcaaccag gttgtggata aactgaaggg cttctccttg
     2101 gctggggagg cgtgtggctg ccccacgcac gtgctcgcca ggaagccccg ccgcacccag
     2161 aacgtgctgt ggcgcatcgc aagcggctgc tggattctct cctttgaaca ggagaagtgg
     2221 agctcgtgtt atttatgaag atgtttggac ctctcattta gctacactgg tggaatgctg
     2281 ggtcaccctg ctctctgctc agcagggtgt aaaaagtagc taaccatgag cagtgaagct
     2341 ctgaaatcca agaatcatcc gttttcattt ctgcagcctg aaaagatgga gtaaagcata
     2401 agcggaacaa atctcacttg aatgcctgcg tgtgatatag ccagacttgt ttgtaagaag
     2461 gtactgtggt ctttggaaat gggtcattgg atttccgagg aaccgtttga agagtcagac
     2521 tacctccctg cagctcctaa acaaaggagc tggtctgcat taatcatgaa gaaacaaaaa
     2581 tcagaacaaa ttgatgaggt gtctgagaat aaaccactgg cagagtttct cagagcactg
     2641 agagggacct tctggcccag ggtcaccagc agtgctgact gctgagccac ttcagaggac
     2701 caaagcagga cccctgggag gagtgatgag ttaaccctaa agtttggcat ctctcagctc
     2761 tgccctttca agggaatgca gtgctcctgg atgtgccagt gagggtgaaa ccggtattct
     2821 acgctgatct ttgggaagga aaggaaaaca agggtattta ctgtgaagca ttaaaaaatt
     2881 agatccaaag catgaaacta aagcaaaatg tgtaaacagc cacctctcca tgaaatagct
     2941 ctattttaca gaacgtatca ttctgtattt gtagaggatc aatgtaggtt gataactaaa
     3001 ataaatacca agcttatgtc tcctctgtgt ttata
//
LOCUS       XM_032618444            2975 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus angiopoietin 2 (ANGPT2), transcript
            variant X1, mRNA.
ACCESSION   XM_032618444
VERSION     XM_032618444.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2975
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2975
                     /gene="ANGPT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746760"
     CDS             524..2014
                     /gene="ANGPT2"
                     /codon_start=1
                     /product="angiopoietin-2 isoform X1"
                     /protein_id="XP_032474335.1"
                     /db_xref="GeneID:116746760"
                     /translation="MWQLVFFTLSCDLLLAAAYSNFRKSMDSIGKRQYQVQHGSCSYT
                     FLLPEMDNCRSPSSAYVPNAVQRDAPLDYDDSVQRLQLLENIMENNTQWLMKLENYIQ
                     DNMKKEMVEIQQNAVQNQTAVMIEIGTNLLNQTAEQTRKLTDVEAQVLNQTTRLELQL
                     LEHSLSTNKLEKQILDQTSEINKLQDKNSFLEKKVLDMEDKHIVQLRSIKEEKDQLQV
                     LVSKQNSIIEELEKQLVTATVNNSVLQKQQHDLMETVHNLLTMISTSNSAKHSLIAKE
                     EQIIFRDCAEAFKSGLTTSGIYTLTFPNSTEEIKAYCDMETAGGGWTIIQRREDGSVD
                     FQRTWKEYKVGFGNPSGEHWLGNEFVSQVANQKRYVLKIHLKDWEGNEAYSLYDHFYL
                     SSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDADNDKCICKCSQMLTGGWWFDAC
                     GPSNLNGMYYPQRQNTNKFNGIKWYYWKGSGYSLKATTMMIRPADF"
     misc_feature    <755..>1357
                     /gene="ANGPT2"
                     /note="Coiled-coil domain-containing protein 158; Region:
                     CCDC158; pfam15921"
                     /db_xref="CDD:464943"
     misc_feature    1364..2005
                     /gene="ANGPT2"
                     /note="Fibrinogen-related domains (FReDs); Region: FBG;
                     smart00186"
                     /db_xref="CDD:214548"
     misc_feature    1721..1723
                     /gene="ANGPT2"
                     /note="gamma-gamma dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238040"
     misc_feature    order(1808..1810,1814..1816,1820..1822)
                     /gene="ANGPT2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238040"
     misc_feature    order(1832..1834,1841..1846,1871..1876)
                     /gene="ANGPT2"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
ORIGIN      
        1 ggtcctgtaa ctgatcgctt tttcccagag ggtttctgca gcatacagtc ctggttggac
       61 agtacacatc atgcagagat ttttcctgtg gcctggctag tgacccccct acaggaagat
      121 aacggacaag ccgggagggc ggagcagcca gctacacatg tctggctgct gttatcaact
      181 tatcatataa ggaaaggaaa gtgattgatt cggatcctga caccgcagaa tctgggggaa
      241 gaaagacaaa ggagcattga ggctgatccg taaagcgaat gcagccctca cgagggagga
      301 ttattcttcc tcctgcgatc tgacagctgg ctgcgggacc ggggagaaga cagcactaga
      361 aatcaaggtc actgctggga aaggagggaa gaggagactt tcactgatgg accctgagcc
      421 atggccgcag agccccgtgt ctgagacggc agcttagcgc ccgggagtct catgcgcctt
      481 gaagtttgct gagctggtgg tttattaccc acagaaagaa agaatgtggc agcttgtttt
      541 ctttactctg agctgtgatc tgctcttagc cgcagcctat agcaactttc ggaagagcat
      601 ggacagcatc gggaagaggc agtatcaggt tcagcacggc tcctgcagct acacgttcct
      661 cctgccggag atggacaact gccgctcgcc ctccagcgcc tacgtgccca acgccgtgca
      721 gcgggatgcg ccgctcgact acgacgactc cgtgcagagg ctccagctgc tggagaacat
      781 catggagaac aacacccagt ggctcatgaa gcttgagaat tacatccagg acaacatgaa
      841 gaaagaaatg gtggagatac aacagaacgc agtgcagaac cagaccgctg tgatgataga
      901 aataggaacc aacctgctaa atcaaaccgc agagcagacc cggaagttaa ctgatgttga
      961 agcccaagta ttaaatcaga caacaagact tgaacttcag cttctggaac attccctatc
     1021 tacaaacaaa ttggaaaaac agattttgga tcagaccagt gaaataaaca aactgcaaga
     1081 taagaacagt ttcctggaaa agaaagttct agacatggaa gacaagcaca tagttcaact
     1141 tcggtcaatc aaagaagaga aagatcagct ccaggtgttg gtatccaagc aaaactccat
     1201 cattgaagag ctagagaaac aactggtgac ggccacggtg aacaactcag ttctccaaaa
     1261 gcagcaacac gacctgatgg agacagttca taatttactg actatgatat cgacatcaaa
     1321 ctcagccaag cactccctca ttgctaagga agaacaaatc atcttcagag attgcgcgga
     1381 agcattcaaa tcaggactga ccaccagtgg catctacaca ctgacgttcc ctaactccac
     1441 ggaggagatc aaggcttact gtgacatgga aacagctgga ggtgggtgga caattattca
     1501 gcgacgtgaa gatggcagtg ttgattttca gaggacttgg aaagaatata aagtgggatt
     1561 tgggaaccct tcaggcgaac actggctggg aaatgagttt gtttcacaag tggctaatca
     1621 gaaacgctac gtgcttaaaa tacacctgaa agactgggaa gggaatgagg cttactcgct
     1681 gtacgaccat ttctatctct caagcgaaga actcaattac aggattcacc ttaaaggact
     1741 cacagggaca gccggcaaaa taagcagcat aagccaacca ggaaatgatt ttagcacaaa
     1801 ggacgcagac aacgacaaat gtatttgcaa atgttcacaa atgctcacag gaggctggtg
     1861 gtttgatgcc tgtggtcctt ccaacctgaa cggaatgtac tacccacaga ggcagaacac
     1921 aaataagttc aatggtatta agtggtacta ctggaaaggg tccggctact cgctcaaggc
     1981 cacgaccatg atgatccgcc cagcagattt ctaaatgcct gcgcacacct gaggaacagt
     2041 gtcttccagt tttcggagac ttaatcccaa agctctgaaa gacacagctg catgctgcct
     2101 ccctatccag ctcggacaga ctgcccacgc tccagactga ggggacccac aagctccatc
     2161 aacgtcaccc cttaaacccg catcactcaa cgaaccgaag cacaaccccc agcgagccac
     2221 agcctggcat ggtgacctgg tagaaagcct acgggaagat aaatttaagc ttgcgaatga
     2281 gactgacaat ttacaggctc tgttgtcaca accaagaatg ttatgtgcga gtcgatcagt
     2341 aaataactgg aaaacagaac acttatgcca tatagtagag ataaccttgg aactgcattc
     2401 ttctgagcac tgtttataga ctgtgtaaat atccatatgt cctgaattca gcaccactat
     2461 cataattaaa aggaaggaaa aattctcgaa gccataaaaa tatactatat attcagggat
     2521 ttttatgaga agtggttatt agccgtttaa tatttggaga aggaaaaaca tagttaacgc
     2581 attctgactc ctcctcttag gtgctttaag ttttcatttt gagaacagca tatttgcata
     2641 ggcactgata ggttagtttt aagttaatgc tcaaatatat atatttcaag tttctagttt
     2701 ctgtggtgaa aactttcagg atctctgaaa ttattaatag aaacgtgttc ttttagtata
     2761 tatgaagatt gtactatttt tttttcagcc tcgctgttaa atatgaaggg atttttagta
     2821 attaaatata acttattagg tgagatgacc gcatttaact tttatgatat ttacaacatt
     2881 gtaatatgat tctgaaacaa atgattgtgc cttgtgacaa ggaaaatctt gatttttaat
     2941 gatgaagaaa attatacatt taatttcatg acaaa
//
LOCUS       XM_032618445            2973 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus angiopoietin 2 (ANGPT2), transcript
            variant X2, mRNA.
ACCESSION   XM_032618445
VERSION     XM_032618445.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2973
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2973
                     /gene="ANGPT2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746760"
     CDS             525..2012
                     /gene="ANGPT2"
                     /codon_start=1
                     /product="angiopoietin-2 isoform X2"
                     /protein_id="XP_032474336.1"
                     /db_xref="GeneID:116746760"
                     /translation="MWQLVFFTLSCDLLLAAAYSNFRKSMDSIGKRQYQVQHGSCSYT
                     FLLPEMDNCRSPSSAYVPNAVQRDAPLDYDDSVQRLQLLENIMENNTQWLMKLENYIQ
                     DNMKKEMVEIQQNAVQNQTAVMIEIGTNLLNQTAEQTRKLTDVEAQVLNQTTRLELQL
                     LEHSLSTNKLEKQILDQTSEINKLQDKNSFLEKKVLDMEDKHIVQLRSIKEEKDQLQV
                     LVSKQNSIIEELEKQLVTATVNNSVLQKQQHDLMETVHNLLTMISTSNSKHSLIAKEE
                     QIIFRDCAEAFKSGLTTSGIYTLTFPNSTEEIKAYCDMETAGGGWTIIQRREDGSVDF
                     QRTWKEYKVGFGNPSGEHWLGNEFVSQVANQKRYVLKIHLKDWEGNEAYSLYDHFYLS
                     SEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDADNDKCICKCSQMLTGGWWFDACG
                     PSNLNGMYYPQRQNTNKFNGIKWYYWKGSGYSLKATTMMIRPADF"
     misc_feature    <756..>1355
                     /gene="ANGPT2"
                     /note="Coiled-coil domain-containing protein 158; Region:
                     CCDC158; pfam15921"
                     /db_xref="CDD:464943"
     misc_feature    1362..2003
                     /gene="ANGPT2"
                     /note="Fibrinogen-related domains (FReDs); Region: FBG;
                     smart00186"
                     /db_xref="CDD:214548"
     misc_feature    1719..1721
                     /gene="ANGPT2"
                     /note="gamma-gamma dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238040"
     misc_feature    order(1806..1808,1812..1814,1818..1820)
                     /gene="ANGPT2"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238040"
     misc_feature    order(1830..1832,1839..1844,1869..1874)
                     /gene="ANGPT2"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
ORIGIN      
        1 gggtcctgta actgatcgct ttttcccaga gggtttctgc agcatacagt cctggttgga
       61 cagtacacat catgcagaga tttttcctgt ggcctggcta gtgacccccc tacaggaaga
      121 taacggacaa gccgggaggg cggagcagcc agctacacat gtctggctgc tgttatcaac
      181 ttatcatata aggaaaggaa agtgattgat tcggatcctg acaccgcaga atctggggga
      241 agaaagacaa aggagcattg aggctgatcc gtaaagcgaa tgcagccctc acgagggagg
      301 attattcttc ctcctgcgat ctgacagctg gctgcgggac cggggagaag acagcactag
      361 aaatcaaggt cactgctggg aaaggaggga agaggagact ttcactgatg gaccctgagc
      421 catggccgca gagccccgtg tctgagacgg cagcttagcg cccgggagtc tcatgcgcct
      481 tgaagtttgc tgagctggtg gtttattacc cacagaaaga aagaatgtgg cagcttgttt
      541 tctttactct gagctgtgat ctgctcttag ccgcagccta tagcaacttt cggaagagca
      601 tggacagcat cgggaagagg cagtatcagg ttcagcacgg ctcctgcagc tacacgttcc
      661 tcctgccgga gatggacaac tgccgctcgc cctccagcgc ctacgtgccc aacgccgtgc
      721 agcgggatgc gccgctcgac tacgacgact ccgtgcagag gctccagctg ctggagaaca
      781 tcatggagaa caacacccag tggctcatga agcttgagaa ttacatccag gacaacatga
      841 agaaagaaat ggtggagata caacagaacg cagtgcagaa ccagaccgct gtgatgatag
      901 aaataggaac caacctgcta aatcaaaccg cagagcagac ccggaagtta actgatgttg
      961 aagcccaagt attaaatcag acaacaagac ttgaacttca gcttctggaa cattccctat
     1021 ctacaaacaa attggaaaaa cagattttgg atcagaccag tgaaataaac aaactgcaag
     1081 ataagaacag tttcctggaa aagaaagttc tagacatgga agacaagcac atagttcaac
     1141 ttcggtcaat caaagaagag aaagatcagc tccaggtgtt ggtatccaag caaaactcca
     1201 tcattgaaga gctagagaaa caactggtga cggccacggt gaacaactca gttctccaaa
     1261 agcagcaaca cgacctgatg gagacagttc ataatttact gactatgata tcgacatcaa
     1321 actccaagca ctccctcatt gctaaggaag aacaaatcat cttcagagat tgcgcggaag
     1381 cattcaaatc aggactgacc accagtggca tctacacact gacgttccct aactccacgg
     1441 aggagatcaa ggcttactgt gacatggaaa cagctggagg tgggtggaca attattcagc
     1501 gacgtgaaga tggcagtgtt gattttcaga ggacttggaa agaatataaa gtgggatttg
     1561 ggaacccttc aggcgaacac tggctgggaa atgagtttgt ttcacaagtg gctaatcaga
     1621 aacgctacgt gcttaaaata cacctgaaag actgggaagg gaatgaggct tactcgctgt
     1681 acgaccattt ctatctctca agcgaagaac tcaattacag gattcacctt aaaggactca
     1741 cagggacagc cggcaaaata agcagcataa gccaaccagg aaatgatttt agcacaaagg
     1801 acgcagacaa cgacaaatgt atttgcaaat gttcacaaat gctcacagga ggctggtggt
     1861 ttgatgcctg tggtccttcc aacctgaacg gaatgtacta cccacagagg cagaacacaa
     1921 ataagttcaa tggtattaag tggtactact ggaaagggtc cggctactcg ctcaaggcca
     1981 cgaccatgat gatccgccca gcagatttct aaatgcctgc gcacacctga ggaacagtgt
     2041 cttccagttt tcggagactt aatcccaaag ctctgaaaga cacagctgca tgctgcctcc
     2101 ctatccagct cggacagact gcccacgctc cagactgagg ggacccacaa gctccatcaa
     2161 cgtcacccct taaacccgca tcactcaacg aaccgaagca caacccccag cgagccacag
     2221 cctggcatgg tgacctggta gaaagcctac gggaagataa atttaagctt gcgaatgaga
     2281 ctgacaattt acaggctctg ttgtcacaac caagaatgtt atgtgcgagt cgatcagtaa
     2341 ataactggaa aacagaacac ttatgccata tagtagagat aaccttggaa ctgcattctt
     2401 ctgagcactg tttatagact gtgtaaatat ccatatgtcc tgaattcagc accactatca
     2461 taattaaaag gaaggaaaaa ttctcgaagc cataaaaata tactatatat tcagggattt
     2521 ttatgagaag tggttattag ccgtttaata tttggagaag gaaaaacata gttaacgcat
     2581 tctgactcct cctcttaggt gctttaagtt ttcattttga gaacagcata tttgcatagg
     2641 cactgatagg ttagttttaa gttaatgctc aaatatatat atttcaagtt tctagtttct
     2701 gtggtgaaaa ctttcaggat ctctgaaatt attaatagaa acgtgttctt ttagtatata
     2761 tgaagattgt actatttttt tttcagcctc gctgttaaat atgaagggat ttttagtaat
     2821 taaatataac ttattaggtg agatgaccgc atttaacttt tatgatattt acaacattgt
     2881 aatatgattc tgaaacaaat gattgtgcct tgtgacaagg aaaatcttga tttttaatga
     2941 tgaagaaaat tatacattta atttcatgac aaa
//
LOCUS       XM_032618446            1519 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tRNA methyltransferase 9B (putative)
            (TRMT9B), mRNA.
ACCESSION   XM_032618446
VERSION     XM_032618446.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1519
                     /gene="TRMT9B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 73% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746761"
     CDS             158..1519
                     /gene="TRMT9B"
                     /codon_start=1
                     /product="probable tRNA methyltransferase 9B"
                     /protein_id="XP_032474337.1"
                     /db_xref="GeneID:116746761"
                     /translation="MDHAAAQLEKQHVHDVYESTAPYFSDLQSKAWPRVRQFLQDQKP
                     GSLIADIGCGTGKYLKVNSQVHTLGCDYCAPLVEIARSRGCEVMVCDNLNLPFRDQGF
                     DAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPW
                     NKALCSQPLSESSQPGRKKQCGHPERSHPYPPPCSACRCPVCFKGRCDSRRSRSVDRD
                     SALAGTCCANISKEGEEENGFYNTLGKSFRSWFSSRSLDESTLRKQIEKMRPLKNTES
                     WANSTISTQPSRHSSFDLDHPEPFSTGEQHLDEEVFVETSQKQLEWLRAPATHKHLNG
                     DHPRGVRRNGDGNFLGSTNTRENCTDAGNLEEGTPSASKIWRRISAADSKDSNPGDTI
                     SVEEQQPDILESGAFMRYYHVFREGELYGLLKDSVSELHILSSGNDHGNWCIIAEKKE
                     SCD"
     misc_feature    233..586
                     /gene="TRMT9B"
                     /note="Ubiquinone/menaquinone biosynthesis C-methylase
                     UbiE/MenG [Coenzyme transport and metabolism]; Region:
                     UbiE; COG2226"
                     /db_xref="CDD:441828"
ORIGIN      
        1 cgtgtggagg gcctcgccgt ttgattccac tcctactact ttgcatttac attacacatg
       61 gagaaaatta tacaacaact atcactctct gagggtggaa actaccatga atcacaaaga
      121 caagaagtaa ttttctgtaa tcacaagatg actcaggatg gatcatgcag ctgcccagct
      181 ggagaagcag cacgtgcacg atgtgtatga gagcaccgct ccttacttca gcgacttgca
      241 gagcaaagcc tggcctcgtg tccgccagtt cctccaggac cagaagcctg gcagcctcat
      301 cgctgacata ggttgtggaa ctggaaagta tcttaaagtg aacagccagg tacataccct
      361 gggctgtgac tactgtgcgc cattggtaga gattgcccgg agtagaggat gtgaagtcat
      421 ggtatgtgac aaccttaatc tcccctttag ggatcagggc ttcgacgcca tcatctccat
      481 aggagtcata catcattttt ctacaaaaca aagaagaatc agagcaataa aggaaatggc
      541 cagggtctta gttcctggag gccagctgat gatttatgtt tgggccatgg aacaaaagaa
      601 ccggcacttt gagaagcaag acgtgcttgt tccatggaac aaagccttgt gctcccagcc
      661 cctctcggaa tccagccagc ctgggagaaa gaagcagtgc gggcatccag aaagaagcca
      721 tccctacccc cctccctgct ctgcatgtcg ctgtcccgtt tgttttaagg ggcgctgtga
      781 ttcgaggcgg tcccgcagcg tggaccgtga ctctgctcta gctggcacct gctgtgcaaa
      841 tatttccaag gaaggcgagg aagaaaacgg attctataac acgctgggga aatcttttcg
      901 ctcctggttt tcctctagat ctttggatga atcaactctg aggaagcaaa ttgaaaaaat
      961 gagacccttg aaaaacacag aaagttgggc caatagcacg atatccaccc agccttcaag
     1021 acactcaagt ttcgacttag atcatccaga gccattttca acaggagagc aacatttaga
     1081 tgaggaagtg tttgtggaga cttctcaaaa acagctggaa tggctgagag cgcccgccac
     1141 acacaaacac ctaaatggag accatccaag aggcgtgagg agaaatggag atgggaattt
     1201 tctgggtagc accaatacca gggagaattg tacggatgca ggtaacttag aagagggtac
     1261 cccttctgct agtaaaatat ggaggaggat ttctgcagct gattccaaag attccaaccc
     1321 aggtgacacc atttctgtcg aagaacaaca gcccgacatt ttggaatctg gtgcctttat
     1381 gcgctattac cacgtgtttc gagaaggcga gctctatggc ctgctgaagg acagtgtgtc
     1441 ggagctccat attctgagct ctgggaatga tcatggcaac tggtgtatca ttgcagagaa
     1501 gaaggaaagt tgtgattga
//
LOCUS       XR_004347862             753 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746762
            (LOC116746762), ncRNA.
ACCESSION   XR_004347862
VERSION     XR_004347862.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..753
                     /gene="LOC116746762"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746762"
     ncRNA           1..753
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746762"
                     /product="uncharacterized LOC116746762"
                     /db_xref="GeneID:116746762"
ORIGIN      
        1 gcccccctac cccccccccc cacccaggcc ttgcctgccc tcaatcaaag ggagtgattg
       61 atactacttg cacgtggtgg ttctttaaga ccacagtttc cattaccaac agagatggtt
      121 ttcaaagtct ggtggtggaa ttgaagcctt taaaagaagg actaatcaga agcctgatat
      181 gtagagcagt ggaggctgga atgcatcgag tggcctggct ccgcagggga cagtttgaaa
      241 atctctggcc tgtaggataa aggttgcctc gtgagaccac agttaagatg ttggccaggg
      301 ctgtagtcac cactgctgct ggaggattcc ctgctgagag ggcttagtca cctgactggc
      361 ctgtcattca ttggattctc tggcctctga tccaagtctt gaacccacat gcaactggat
      421 ggcaagaagt agtttgctcg gaagtctgat tgagcacatg ttcctcacct cctaagagct
      481 tgggtgaagt ttctctgcct aagagcctac tgcatcccgg agaatagagc tgccccctca
      541 agcccctggg caccgacttc ccagcctgac cgctgttcag ccaagctctt gtgatgcagc
      601 acagagggcg acacgattct taggagccag agccttggaa cagctgccag gcaaggcctc
      661 ctttcattgg ctgttcccct cccgtggata tgaggggctt ctccgagctc gtagacactg
      721 acggcgtcct tgtgatcatc atctcgaaca aag
//
LOCUS       XM_032618447           11584 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin and Sec7 domain containing 3
            (PSD3), transcript variant X1, mRNA.
ACCESSION   XM_032618447
VERSION     XM_032618447.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11584
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..11584
                     /gene="PSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746763"
     CDS             100..3555
                     /gene="PSD3"
                     /codon_start=1
                     /product="PH and SEC7 domain-containing protein 3"
                     /protein_id="XP_032474338.1"
                     /db_xref="GeneID:116746763"
                     /translation="MGDGGRSPSAGWKPWPGGPAPLHVWGTDPQAQDAVGGSLPQPLA
                     AAAAAESPRSGGSGEAPAPCPGRPRSAEGSGTSTRPRSARLGRHRALLQTSRSCPAPP
                     AALPLKAETFVWVNSASAHSQSVAKAKYEFLFGRSEEKTPDTSDHGGSTLLPPNVTNE
                     FPEYGTMEESGEGLRASVEFDAESLPCCPQVQQRVQSLAGHPSGLLSVTGGPKDVREV
                     PSQSHLKEQSLQPIDSLISALKATEARIVSGTLQATKVLDGDAVSTFLVQQVEQEPDP
                     ASHKTQRANTLFPAGREKSPDIPLSAEVTTEESFYLSIQEDLTALLTGETQAELSLRA
                     NNGRKGAVHVQEPACPASSVGSPVTHSSVGSAGLLRERRSDQGREHPEQCGRGSSSGR
                     PGQVKHVEFQGVEILWTGGEKRGTWQPVDFQASLERTTPPESKEFSKVPSHLVSSAGL
                     WDSAGLTESVWDDTWRAPSERLATGSGPFLPEPLLESGEDEVFLRENKEHLETKPELE
                     RDRERILEQEEHFRARDDDILGSGYAEDSTDVYSSQFETILDNTSLYYSAESLETLYS
                     EPDSYFSFEVPLTPMIQQRIKEGGQFLERTSMGGQQDVLSISADGGIVMGYSGGNTNG
                     LSGSSNSTYVKGTPEIAFWGSSHSNAGVKTTLLEAHSEMGSTEILEKETSGSLSNGTS
                     SNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSKLVAEEYLKFFDFTGMTLDQSLR
                     YFFKAFSLVGETQERERVLVHFSNRYFYCNPDTIASQDGVHCLTCAMMLLNTDLHGHN
                     IGKKMTCQEFIANLQGVDEGGDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTD
                     EKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGW
                     KTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASRATDYEKKPNVLKLKT
                     ADWRVLLFQAQSPEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLS
                     QEEQLKSHESKLRQITTELAEHRSYPPDKKVKAKEVDEYKLKDHYLEFEKTRYEMYVR
                     LLKEGGLELLSSSGGGGAAGLKKSHSSPSLNPDASPVTAKVKRNVSERKDHRPETPSI
                     KQKVT"
     misc_feature    2149..2613
                     /gene="PSD3"
                     /note="Sec7 domain; Domain named after the S. cerevisiae
                     SEC7 gene product. The Sec7 domain is the central domain
                     of the guanine-nucleotide-exchange factors (GEFs) of the
                     ADP-ribosylation factor family of small GTPases (ARFs) .
                     It carries the exchange factor...; Region: Sec7; cd00171"
                     /db_xref="CDD:238100"
     misc_feature    order(2335..2358,2443..2484)
                     /gene="PSD3"
                     /note="active site/putative ARF binding site [active]"
                     /db_xref="CDD:238100"
     misc_feature    2746..3123
                     /gene="PSD3"
                     /note="Exchange Factor for ARF6 Pleckstrin homology (PH)
                     domain; Region: PH_EFA6; cd13295"
                     /db_xref="CDD:270107"
ORIGIN      
        1 gtggatgcaa ggagggggcg cgctcgcaga tcccctgcct ccgggacccg tggacggcgg
       61 cagccccggc catgcagacc ccctagcccg gctcgcggca tgggcgacgg tggtcgcagt
      121 ccctccgcgg gctggaagcc ctggccgggc ggtcctgctc cgctgcacgt gtggggcacg
      181 gacccgcagg ctcaggacgc cgtgggaggc tcccttcccc agcccctggc tgccgccgcc
      241 gcggctgaaa gcccccggtc cgggggaagt ggcgaggcgc cggccccctg cccggggcgc
      301 ccgcggagcg ctgagggctc aggcacgtcc acgcggccca ggagcgccag gctcggcagg
      361 catcgtgcgc tcctccagac cagcaggagc tgcccggccc cgcctgccgc cctgcctctc
      421 aaggcagaga catttgtttg ggttaacagt gcatcagcac attcccagag tgttgccaag
      481 gccaaatatg aatttttatt tggcagatct gaagagaaaa ctccagatac tagtgatcat
      541 ggaggaagca ctttactccc cccgaatgtc acaaatgaat ttccagaata tgggaccatg
      601 gaggaaagtg gagaaggcct aagagcctct gtcgagtttg atgccgagtc tctgccatgc
      661 tgccctcagg tgcagcagag ggtccagtct cttgctggcc atccctctgg gcttctcagt
      721 gttaccggag gaccaaaaga tgtcagagag gtcccctctc agagtcatct caaggaacag
      781 agtttacaac ccattgactc tttgatttca gctctgaaag ccacagaagc cagaatagtt
      841 tcaggaacat tgcaggctac aaaggtactg gatggagatg cggtttctac ttttttagtt
      901 cagcaggtgg aacaagaacc agaccctgcc agtcataaaa cacagagagc caacacactg
      961 ttccctgctg gccgagaaaa gtcacccgat atacctcttt cagctgaagt tacgacagag
     1021 gaaagctttt atttgagcat ccaggaggac ctgactgcac tattaactgg agaaactcaa
     1081 gcagagcttt ccctaagagc taataatggg agaaaggggg ctgtccatgt gcaggagcca
     1141 gcttgtccag catcctccgt ggggagcccc gtgacccaca gctcagtggg aagtgctggt
     1201 ttattgagag agaggagatc tgatcagggg agagagcacc cagagcaatg tggtcgaggc
     1261 agctcctcag gacgcccagg ccaggtcaaa catgtggaat ttcaaggggt ggaaatattg
     1321 tggacaggag gggagaaaag agggacatgg caacctgtgg attttcaggc atcattggaa
     1381 aggacaaccc ctcctgaaag caaagagttt tctaaagtgc caagccatct cgtctcatct
     1441 gctggtttgt gggattcagc tggtttaact gagagtgttt gggatgacac ctggagagct
     1501 ccttcagaga ggctggccac tggctcaggg ccatttctgc ctgagcctct tcttgagagt
     1561 ggagaggatg aagtcttcct aagggaaaac aaggaacatc ttgagacgaa acctgaattg
     1621 gagagagaca gggaaaggat tcttgagcaa gaggagcact ttcgggccag agatgatgat
     1681 atccttgggt ctggttatgc agaggactcc actgatgtgt acagctccca gtttgaaacc
     1741 attttggaca acacttcttt atactacagt gctgagtcct tggagacttt atattcagag
     1801 cctgatagct attttagctt tgaagtgccc ctcactccca tgatacaaca gcgcattaaa
     1861 gaaggtggtc agttcctgga gaggacatca atgggaggac agcaggacgt cctgagcatc
     1921 tctgcagatg gtggaatagt gatgggctat tctggtggga acaccaatgg gctgagtggc
     1981 tccagtaact ccacctacgt gaaaggcacc ccagagattg ctttctgggg aagttctcac
     2041 agcaatgctg gggtgaaaac aacactgcta gaggctcatt ctgaaatggg gagtactgaa
     2101 attctggaaa aggaaacctc aggaagtctc agtaatggta ccagcagcaa cgtagaagca
     2161 gccaaaaggt tggccaaacg tctttatcaa ctagacagat tcaaaagatc ggatgtggca
     2221 aagcacctag gcaagaacaa tgaatttagc aaactagttg cggaagaata tttgaagttt
     2281 tttgatttta caggaatgac actggatcag tctctcaggt acttctttaa agcattttct
     2341 cttgtgggag aaacccaaga acgagagaga gttttagtac acttctccaa tagatatttt
     2401 tattgtaacc cagataccat tgcttcacaa gatggagtcc attgcctcac ctgtgcaatg
     2461 atgcttctta acacagatct ccatggccat aatattggaa agaagatgac ctgccaagag
     2521 ttcattgcaa acctccaagg ggtagatgag ggtggtgatt tctccaagga tctactgaaa
     2581 gctctgtaca actcaatcaa gaatgagaag cttgaatggg cagtagatga tgaagagaaa
     2641 aaaaagtctc cgtcagaagg tactgatgag aaggctaatg gaacacatcc aaagaccatc
     2701 agccgtattg ggagtactac caacccattc ttggacattc ctcatgaccc aaatgctgct
     2761 gtgtacaaaa gtggtttctt ggctcggaaa atccatgcag atatggatgg aaagaagact
     2821 ccaagaggaa agcgaggatg gaagaccttt tatgctgtac taaagggaac agttctttac
     2881 ttgcaaaagg atgaatataa gccagagaag gccctgtcgg aagaggacct gaaaaacgct
     2941 gtgagtgtgc accacgcact ggcgtcccgg gccacggact acgagaagaa acccaatgtg
     3001 ctcaaactga aaactgctga ttggagggtc ttgctttttc aagcccagag tccagaggaa
     3061 atgcaagggt ggataaacaa aattaattgt gttgcagctg tattttctgc accaccattt
     3121 ccagcagcca tcggatctca gaagaagttt agtcgtccac ttctgcctgc caccactaca
     3181 aaattgtctc aggaggaaca gctgaaatct cacgagagca agctgaggca gataaccaca
     3241 gagctagccg agcaccgctc ctacccacct gacaagaagg ttaaagccaa ggaggtggat
     3301 gagtacaaac tcaaagatca ctatctggag tttgagaaaa cccgctatga gatgtatgtc
     3361 cgccttctga aagagggggg cctggagctg ctgagtagca gcggtggagg gggcgccgcg
     3421 ggcctgaaga agtcgcactc cagcccctcg ctgaacccag atgcatctcc ggtcaccgcc
     3481 aaggtcaaga gaaacgtgtc ggagaggaaa gaccaccgac ctgaaactcc aagcattaag
     3541 caaaaagtca cttagaatcc atctgcggcc aggaagtgct ggtcgtggag caaaatagag
     3601 tttttcaaga tctttctggt gaatccgtga atatatttaa aacaaagtct gtgactaaat
     3661 ggtgcattag taacctttcc tattgtatat ttttgttagt ttctgtacag attgtctctt
     3721 tgctcttgat ttctttgctt tgatgatttc tgctacctga taactaatgc accttttgtg
     3781 aggggagggg atcatgattt cagaatggat tatgtatcac ttctccctca gggttctctc
     3841 atttgcactc tgctcagttg ttttgtgtgt tctcaaatca gctgttacac tttttataaa
     3901 ggttaaagat ttaatccatt gtgaaacact taactggaca aactttgtag tttagaaaat
     3961 tctagccaga gttaatataa gccttttcat gtgaaatctt gcccagtcac agaggtggaa
     4021 tccagctctc gcgctcgcag aagttcagtt aagagttaca ctcacgggag gtgccactcc
     4081 cccgtgaggc ctcatgcatc tgagtgctta gtgttgagtc cagccctgct ggtgggggta
     4141 aaggggggca aggacctcag gcctggagaa tttaagaagc acgttagctc gcttgaagtg
     4201 tagattccat ttcagccaag caaggaagga ggaaatggcg tcttttgaag gctgaggcaa
     4261 ggtggcccca agttcatttt gttttctaaa ggatggtggc aacaatggac tcttgggggc
     4321 tgcagcagcg agctgtgttt ttgatctgca ggaagttgtt accccactcc cacagggtct
     4381 agacaaggaa tccagagcca tctgtggtgg ataccctgcc atccgggaat taggttcttt
     4441 tatatatata ggcatggtgt tgtctcctgg ttgtaagaat ttggggtctt cctaacaaaa
     4501 taatatcaaa atggagcccc tttcattctt tccttaataa agcaaaataa ggaaggaaaa
     4561 agttgttttt ccctatagtt gtttggcaat aggatgttga ttctttacaa taaatctgaa
     4621 aggaataaaa tctgaaggaa ttatggctgg aaaactgagg aatctcctgg tgacaaacac
     4681 agagtccctt agtctgttct tgtctctgtc tctgtgaagc cgctttaccc tgctgcactg
     4741 aactgtcccc taaaataaat ccttgattct aaatcatttc tttgtatctg ctcagagcag
     4801 tcataagctt attccaagga cagtcccttt gaaattcagg gtgataaaca gaacattctc
     4861 ttactgagga gaagaaagaa gtgaaaattg agcccactgt gagttagaac tttctgattt
     4921 tggaacctga aaactctgtg atccttaaac ctagaatctc cacaagttca gagcgaatgg
     4981 aattactttg aatgttcttt tctctcccac agagatttgc tcttttctac tcggtttact
     5041 agttaaggtg ctgtgtgact agaggctcag ggactctgtg tgggtagcat ggctccgggg
     5101 aattagagaa aacctgctcc tgaaccatgg tactttctag tggtattttg ttctgatgca
     5161 ccagcattta tacaggacta tttattaaca tgcacttcct tcagctgtag aaatgcccat
     5221 acttgctggt gcccagaaaa gagaaacccc tctgtaaggt tgtagctgct tgctttgtgg
     5281 tgtttttgcc acacatttga aaaactccct ctaaccctct atcttgttta ttaggtaaag
     5341 gcagtgacta aatttgtttc aagacctaga aacaaacagg gtagttacca acatggccca
     5401 tgtacctgat tctttctttg tagcttctga ctgaatccaa ggtttctaca agggaatcca
     5461 aggtttcttc ctagaatctg aatcatcagt gtgtgtgctt tctgcctaga tctttatcct
     5521 aagcagaggg gagagaggta cctagaccat atcatctctg agcttcaata actaaagaag
     5581 aatcaacatc cctgactggc ttgaatgtgt gtgctcccag tatgtgtgtg tctgtgtatg
     5641 tcgaatgtct ccgtgtgtgt cacttagagt ctgtaccaga cgtggaatgg taccttgctg
     5701 cagtgtttag acactcgaac agctctgaaa tgcccagtga gcatcagcac cgacggcctt
     5761 gtgctcactg tgtgactcac tgatgttatc tccaagaact tctggatatg ctaatagaga
     5821 gacagatgag aagggcactt ttgaagctgt ggtatatact gcgtcatagc ttatcttgaa
     5881 aaacaactgc aaaggttatt ttgtgagcca tgatcccaga ctgccattgt taggggatgg
     5941 gctgagaaca cctccccctg aggcctctgg actgtctggt gccagtgctc cttgcaggcc
     6001 aagagcttat cctgtaggag acaaggcccc ttctgtgaca ggatcctgag agccttgccc
     6061 atacccaacc agggtctcct ttgtgatcat ttctttcccg tggtgtctag tcaggagaca
     6121 tgactgaaga ccttcccctt cacagttcct ccacgcctgc cacccagttc acggtacagg
     6181 ggagccccct ccttcccttc tgaaggtact gccccccatc cctcacccat cccctagtac
     6241 caggagcctt gcgatctctc tccatctaat aagttattat tcctctttgc agaaatacac
     6301 ctaatattaa tttttagtat agaaaatctt gagagtcatc aaaatacctt ggtgacggtc
     6361 ttgttgccga attgtccata gaagcagcca tgtgtggaac cggaaccaaa gtgtctcagg
     6421 gtgtgttccc ccacctcaca tattgacatt tacagggagg ggtcaggatt tccttgttag
     6481 caatcgaaac ctaattacta gcatgcaaga gtctttattt tattgccagc catagacatt
     6541 atttgaagta tgctttttac agatatcatt tgctgactct tagtaatgcc tgattaaacc
     6601 aagcaacact tctgcacatt ttaattacct cgtgtggaga gtcgtctggg ggaccgcagt
     6661 cctggaccat gtgaaccttt tctgttgctc ttgcgtaaag aggatggaga gcacctgtgc
     6721 aggaccgtct ttgcttctcc ggctgtgatc ctcattccaa agatgagtgt ttcctggtca
     6781 gaagtgacgt gagggagtta attctgggag agaaaaattg gctggctctc caaggccagt
     6841 ctagggttgg tctcttgtgt ttgtgtttca ccctgtggcc aaagcacaga accccctgag
     6901 gctggagaga ggtttacata cccagcaggg aaggagcccc ctgccagccc tggcctgttg
     6961 tccttccagc acagaaagag ctggggaaga cattcttagg tagggcaggg cttgctttgg
     7021 ccttgagctg cacctcttct ctgcctttat ccctaatcat agacaattgg aagaaaattg
     7081 accttaaaga agtttctcta ttgtcttact ttgaacactt tcttgggttt agttagtggt
     7141 cactggaatt tgattctttg gcatttttcc ttgtagtcgc ccgttaagct tttttaagac
     7201 caagttcaca gggcgttctc agccttgtgg tccaaagctc tgtagtgtag ctgttgtgga
     7261 ccgggccaag ggttcagcag gcggggagcc accttcctta gctgcaacaa tggacaacct
     7321 cctgatccct tcacttttca attgtcagaa tttttgcaat tataagatta gcgctgttaa
     7381 acaggaatca aagtggcacc cgggacttgt tcacagtaga gcctggataa tgactagtgt
     7441 gacttgggct taactagcac ctgcttttct cacggagcat ctgagttact ctgacagaag
     7501 atcagctttt gtaaggagat gagcctctgg gccttcctgg ttccaaagct ttctggctgt
     7561 ctcttctccc aggccaacag tctgccccgg gcaacaggtg tctccattgg ccttggacat
     7621 cttatagtac caagttaccc agaggacttc agagaccagt agctcacaca gaataaccca
     7681 acagtgatga aaggtgcttt gtcaccactt ctgttctctt ttcagtgtct cactctcaaa
     7741 aggaggacca aggtccaaag ccattgccat tttccttttg tgcccagagt acccaaagcc
     7801 cgagtgggaa gcctctgcct aggacagtga gtggccagtg cctgcagaga gaatgtcttc
     7861 agagagagag agtgccagta aagatgtgaa tctgtatgac agtctgtgga cttgactgca
     7921 acagcaagaa aatatggcaa gttaagtagt tgtatataca gtaggtttcc ttaggtctct
     7981 ttggctcatc ctttgtaatt tacgtgtgta tctgtagtgt tgcaggcttt tggagaatat
     8041 tgatagtatg tcaggcatca aagagtatgc cttctctcac cttccaatgt cgtaattgta
     8101 ggtatttata gttgtatgta tctatattgt atcaatgtgt agattgtaca tcagtatatg
     8161 gcatatgtac atcaaattta tttttgtcct taaccagtgt gatatgaaaa gcaagtaaaa
     8221 acctcatagg attgaatata taatgcagtt tttgagagtc tatacagtgg tactgtttta
     8281 ttaaacttaa attcaaatga tattttgatt aattttttta atgataagat tttatgctag
     8341 aaaatttcgt gataagattt tatgctagaa aatgagcttt gaatcaccag agcaaaaatg
     8401 gctctgaact aactttgtta aactatttca gtgtactgtg tacaataccc ggggtggggc
     8461 tgtagctcat tataatttga aatatacaga aagaaaggga aaaaaaaaaa aaaacacagg
     8521 cagcctgtgc agtcttagca acttcagtat taagagcact taaacataaa gtcaaactga
     8581 caatttgggg cttattacaa aatgtgatgc tttaaagcac acgttcttta ttgttgtaat
     8641 tagtccagaa aaatagagct ttcagaacaa ttagctaagt gcccagcgta tcatttatgt
     8701 tcctgtgtca gttttacagc agcccaaacc accctcctag cactgcgtcc tcatcctctt
     8761 caccttaaag aactgtcgcc agccctgcag cagatcaggg cttccagaga tctgggactg
     8821 ccctccaggc ctgcggttgc acaaattagc atctagacac aggtaaaaga attttaggac
     8881 aggctatgga ccaggttaaa actttagtat ttttatactt aggtctcttt tccggcctct
     8941 ccccaaagaa gagccactgg ccttagttgt ctgagcttac tgcctatctt aaagtatata
     9001 agtattagat aactagagat taaaacttta ttagccagca tgttggtata tttaaagcaa
     9061 aactgagtgt gtgtgagtga gtggttgagt gcagtgtatt cgtctacgca cactgcctgt
     9121 cgttcctcgt gtccagttca gagggtggga gtcgtgggct gggaggctca gcttcagctc
     9181 caggctgcag tagtagtggt ggttacactt gcgtttttta attaactctg cagtctcaaa
     9241 ccgtttttgc caatgtatcc tatttcctaa tctgtttttg accgcgctgt gagttggctc
     9301 tgtggctgcg cagcagggtc tctgttccac aagagtgtgt ttccttctaa gaactatagt
     9361 gatttgcaaa agtgtccatt tgactcagaa atcatataca aaaggaatat caaaatttta
     9421 aagtttcact ctggggctta atcatttgaa atgtttggac ttttaatata aagccaagta
     9481 accatttggc atggataata acatctcctc tgcggagagg atgcatgctc actgattttt
     9541 aatgccatta ggaccctttc ttaagctgta ggaacaagag tcaaagtgag gatgtgggga
     9601 gtgtgtgagc ctcttgcctt ccgcagaggg agacatgctg tggcctgtcc tccgctctga
     9661 gagatctggc gcacgtggag cctcggcagt gtgtacatgc acttgcacgc gtgtacacag
     9721 cgagtgtcct aagtgacata aacttgagac ccagagcgcc cgagtgttgc gagaggtgtg
     9781 gaccaaggtg acagcggccc gcaggcccct cccgggcggg caggagttgg agccccgcat
     9841 ctgaccttga gatgctgtgc ggggaggcgg gtggctggca gttgggggac gctcatctcc
     9901 tgtctggtgg accttcgctc cccggcgtcc cgcagtggct ggcgtggcca tcgtccccag
     9961 tggcgctgct gctcgctctg tagctggttc ctttgagaag ggagtacggg gagggggggt
    10021 cacagccttc cccccaccag gctcccctct gagctggtgg tggggctgga aaggggagga
    10081 gcctggccac gatgggtttc ccttcgcagg gtggaggctc agctttcacg aatagtgcta
    10141 taaaaataag caccttactg tcagttcctg aaaatgctgg ttactaggga gaattttgga
    10201 gtttccctta ccatttcccc gagcaccccc cggggagccc caggcacaag ctcagttcag
    10261 gacccactgt gggcctgggc tcctgctggg acgccccctc agaggccggc atgcacctct
    10321 ctgcagaggg tttcctccca gcctccctct tcctgggctc ctaggagccc agggttggtc
    10381 catgtgcacc ttccctggct gcagggatcc agctgtcctc attggctgac cctgctgagg
    10441 gtgaccgagt cactgcagtg acgcttgaca aaaggtatta aacaattctc tgactgaaga
    10501 caagactgca tattttgcct ttgcaagaaa caagatggca ggttgaacta taaccgggga
    10561 tggatgatct gtttgccttt gcacctggat ttctggaaat ggataaggtt tcgcttccgc
    10621 ggaagggtca agggacgcag cccgctgccg cgcggttctc cccaggccca tgagccctgc
    10681 tgggcagagg cctgagtgcc tccgtgcatt cctcctccca cccccgccac cggcttcgga
    10741 gcctgtttct agagcagaag ttgatgcagt ggagagctgg aaccgcagcc ttgattactg
    10801 tagggcaggc agagggcaga ggtttgtatc ctttactata aaacatgctt tgaacttttc
    10861 caatctatta actggattat gtttactggg gttcaaacta attggcagag tgggtcagtc
    10921 ccttaacctt cagagctttc tccaccagtc acttcagttt cattctagtc ccggtgccat
    10981 atgtccctga aatcgtgaaa gtaattagtg ataaaatagc agcctactca ttttcagtgg
    11041 ccagactgtc agcactggca gacttgggtg aggccgtggc accaactcct taggaaacct
    11101 gttcctcctc gcccaccaga ttcgagaaat gctgtctcct agagaatcac ggtatttatg
    11161 gtggtcatct tttgaatgga acagtaattt atgtggatac tgttaaagtg tttaaagaat
    11221 attttgaaaa ttaagtttac attttacgat cgctttattt tttattaaaa tggttgtata
    11281 taaatattac cctatctcac cgttgttgaa ggaaagctaa ccgtgcagac cagtgagtca
    11341 cctgatgtgt atagaagctg tgatgtatag agtacatttc tctactgtat aaatgctcat
    11401 gaatataact cttcctgtgt ttttataagt tggggataat ttgttgcttt acaacaacaa
    11461 aatttattgc atttaaatgg tttttatgta atagaaatca tgcaaaatag tgaaggattt
    11521 aaaatatgta tatgatatat gtaaatgtac aaactttaga aagaaataaa tccaacaaat
    11581 ttca
//
LOCUS       XM_032618448            9970 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin and Sec7 domain containing 3
            (PSD3), transcript variant X2, mRNA.
ACCESSION   XM_032618448
VERSION     XM_032618448.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9970
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9970
                     /gene="PSD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746763"
     CDS             147..3602
                     /gene="PSD3"
                     /codon_start=1
                     /product="PH and SEC7 domain-containing protein 3"
                     /protein_id="XP_032474339.1"
                     /db_xref="GeneID:116746763"
                     /translation="MGDGGRSPSAGWKPWPGGPAPLHVWGTDPQAQDAVGGSLPQPLA
                     AAAAAESPRSGGSGEAPAPCPGRPRSAEGSGTSTRPRSARLGRHRALLQTSRSCPAPP
                     AALPLKAETFVWVNSASAHSQSVAKAKYEFLFGRSEEKTPDTSDHGGSTLLPPNVTNE
                     FPEYGTMEESGEGLRASVEFDAESLPCCPQVQQRVQSLAGHPSGLLSVTGGPKDVREV
                     PSQSHLKEQSLQPIDSLISALKATEARIVSGTLQATKVLDGDAVSTFLVQQVEQEPDP
                     ASHKTQRANTLFPAGREKSPDIPLSAEVTTEESFYLSIQEDLTALLTGETQAELSLRA
                     NNGRKGAVHVQEPACPASSVGSPVTHSSVGSAGLLRERRSDQGREHPEQCGRGSSSGR
                     PGQVKHVEFQGVEILWTGGEKRGTWQPVDFQASLERTTPPESKEFSKVPSHLVSSAGL
                     WDSAGLTESVWDDTWRAPSERLATGSGPFLPEPLLESGEDEVFLRENKEHLETKPELE
                     RDRERILEQEEHFRARDDDILGSGYAEDSTDVYSSQFETILDNTSLYYSAESLETLYS
                     EPDSYFSFEVPLTPMIQQRIKEGGQFLERTSMGGQQDVLSISADGGIVMGYSGGNTNG
                     LSGSSNSTYVKGTPEIAFWGSSHSNAGVKTTLLEAHSEMGSTEILEKETSGSLSNGTS
                     SNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSKLVAEEYLKFFDFTGMTLDQSLR
                     YFFKAFSLVGETQERERVLVHFSNRYFYCNPDTIASQDGVHCLTCAMMLLNTDLHGHN
                     IGKKMTCQEFIANLQGVDEGGDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTD
                     EKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGW
                     KTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASRATDYEKKPNVLKLKT
                     ADWRVLLFQAQSPEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLS
                     QEEQLKSHESKLRQITTELAEHRSYPPDKKVKAKEVDEYKLKDHYLEFEKTRYEMYVR
                     LLKEGGLELLSSSGGGGAAGLKKSHSSPSLNPDASPVTAKVKRNVSERKDHRPETPSI
                     KQKVT"
     misc_feature    2196..2660
                     /gene="PSD3"
                     /note="Sec7 domain; Domain named after the S. cerevisiae
                     SEC7 gene product. The Sec7 domain is the central domain
                     of the guanine-nucleotide-exchange factors (GEFs) of the
                     ADP-ribosylation factor family of small GTPases (ARFs) .
                     It carries the exchange factor...; Region: Sec7; cd00171"
                     /db_xref="CDD:238100"
     misc_feature    order(2382..2405,2490..2531)
                     /gene="PSD3"
                     /note="active site/putative ARF binding site [active]"
                     /db_xref="CDD:238100"
     misc_feature    2793..3170
                     /gene="PSD3"
                     /note="Exchange Factor for ARF6 Pleckstrin homology (PH)
                     domain; Region: PH_EFA6; cd13295"
                     /db_xref="CDD:270107"
ORIGIN      
        1 gctctgctcc cgacgagggg aaagagggag agaagaaaac ccgggacgtg gatgcaagga
       61 gggggcgcgc tcgcagatcc cctgcctccg ggacccgtgg acggcggcag ccccggccat
      121 gcagaccccc tagcccggct cgcggcatgg gcgacggtgg tcgcagtccc tccgcgggct
      181 ggaagccctg gccgggcggt cctgctccgc tgcacgtgtg gggcacggac ccgcaggctc
      241 aggacgccgt gggaggctcc cttccccagc ccctggctgc cgccgccgcg gctgaaagcc
      301 cccggtccgg gggaagtggc gaggcgccgg ccccctgccc ggggcgcccg cggagcgctg
      361 agggctcagg cacgtccacg cggcccagga gcgccaggct cggcaggcat cgtgcgctcc
      421 tccagaccag caggagctgc ccggccccgc ctgccgccct gcctctcaag gcagagacat
      481 ttgtttgggt taacagtgca tcagcacatt cccagagtgt tgccaaggcc aaatatgaat
      541 ttttatttgg cagatctgaa gagaaaactc cagatactag tgatcatgga ggaagcactt
      601 tactcccccc gaatgtcaca aatgaatttc cagaatatgg gaccatggag gaaagtggag
      661 aaggcctaag agcctctgtc gagtttgatg ccgagtctct gccatgctgc cctcaggtgc
      721 agcagagggt ccagtctctt gctggccatc cctctgggct tctcagtgtt accggaggac
      781 caaaagatgt cagagaggtc ccctctcaga gtcatctcaa ggaacagagt ttacaaccca
      841 ttgactcttt gatttcagct ctgaaagcca cagaagccag aatagtttca ggaacattgc
      901 aggctacaaa ggtactggat ggagatgcgg tttctacttt tttagttcag caggtggaac
      961 aagaaccaga ccctgccagt cataaaacac agagagccaa cacactgttc cctgctggcc
     1021 gagaaaagtc acccgatata cctctttcag ctgaagttac gacagaggaa agcttttatt
     1081 tgagcatcca ggaggacctg actgcactat taactggaga aactcaagca gagctttccc
     1141 taagagctaa taatgggaga aagggggctg tccatgtgca ggagccagct tgtccagcat
     1201 cctccgtggg gagccccgtg acccacagct cagtgggaag tgctggttta ttgagagaga
     1261 ggagatctga tcaggggaga gagcacccag agcaatgtgg tcgaggcagc tcctcaggac
     1321 gcccaggcca ggtcaaacat gtggaatttc aaggggtgga aatattgtgg acaggagggg
     1381 agaaaagagg gacatggcaa cctgtggatt ttcaggcatc attggaaagg acaacccctc
     1441 ctgaaagcaa agagttttct aaagtgccaa gccatctcgt ctcatctgct ggtttgtggg
     1501 attcagctgg tttaactgag agtgtttggg atgacacctg gagagctcct tcagagaggc
     1561 tggccactgg ctcagggcca tttctgcctg agcctcttct tgagagtgga gaggatgaag
     1621 tcttcctaag ggaaaacaag gaacatcttg agacgaaacc tgaattggag agagacaggg
     1681 aaaggattct tgagcaagag gagcactttc gggccagaga tgatgatatc cttgggtctg
     1741 gttatgcaga ggactccact gatgtgtaca gctcccagtt tgaaaccatt ttggacaaca
     1801 cttctttata ctacagtgct gagtccttgg agactttata ttcagagcct gatagctatt
     1861 ttagctttga agtgcccctc actcccatga tacaacagcg cattaaagaa ggtggtcagt
     1921 tcctggagag gacatcaatg ggaggacagc aggacgtcct gagcatctct gcagatggtg
     1981 gaatagtgat gggctattct ggtgggaaca ccaatgggct gagtggctcc agtaactcca
     2041 cctacgtgaa aggcacccca gagattgctt tctggggaag ttctcacagc aatgctgggg
     2101 tgaaaacaac actgctagag gctcattctg aaatggggag tactgaaatt ctggaaaagg
     2161 aaacctcagg aagtctcagt aatggtacca gcagcaacgt agaagcagcc aaaaggttgg
     2221 ccaaacgtct ttatcaacta gacagattca aaagatcgga tgtggcaaag cacctaggca
     2281 agaacaatga atttagcaaa ctagttgcgg aagaatattt gaagtttttt gattttacag
     2341 gaatgacact ggatcagtct ctcaggtact tctttaaagc attttctctt gtgggagaaa
     2401 cccaagaacg agagagagtt ttagtacact tctccaatag atatttttat tgtaacccag
     2461 ataccattgc ttcacaagat ggagtccatt gcctcacctg tgcaatgatg cttcttaaca
     2521 cagatctcca tggccataat attggaaaga agatgacctg ccaagagttc attgcaaacc
     2581 tccaaggggt agatgagggt ggtgatttct ccaaggatct actgaaagct ctgtacaact
     2641 caatcaagaa tgagaagctt gaatgggcag tagatgatga agagaaaaaa aagtctccgt
     2701 cagaaggtac tgatgagaag gctaatggaa cacatccaaa gaccatcagc cgtattggga
     2761 gtactaccaa cccattcttg gacattcctc atgacccaaa tgctgctgtg tacaaaagtg
     2821 gtttcttggc tcggaaaatc catgcagata tggatggaaa gaagactcca agaggaaagc
     2881 gaggatggaa gaccttttat gctgtactaa agggaacagt tctttacttg caaaaggatg
     2941 aatataagcc agagaaggcc ctgtcggaag aggacctgaa aaacgctgtg agtgtgcacc
     3001 acgcactggc gtcccgggcc acggactacg agaagaaacc caatgtgctc aaactgaaaa
     3061 ctgctgattg gagggtcttg ctttttcaag cccagagtcc agaggaaatg caagggtgga
     3121 taaacaaaat taattgtgtt gcagctgtat tttctgcacc accatttcca gcagccatcg
     3181 gatctcagaa gaagtttagt cgtccacttc tgcctgccac cactacaaaa ttgtctcagg
     3241 aggaacagct gaaatctcac gagagcaagc tgaggcagat aaccacagag ctagccgagc
     3301 accgctccta cccacctgac aagaaggtta aagccaagga ggtggatgag tacaaactca
     3361 aagatcacta tctggagttt gagaaaaccc gctatgagat gtatgtccgc cttctgaaag
     3421 aggggggcct ggagctgctg agtagcagcg gtggaggggg cgccgcgggc ctgaagaagt
     3481 cgcactccag cccctcgctg aacccagatg catctccggt caccgccaag gtcaagagaa
     3541 acgtgtcgga gaggaaagac caccgacctg aaactccaag cattaagcaa aaagtcactt
     3601 agaatccatc tgcggccagg aagtgctggt cgtggagcaa aatagagttt ttcaagatct
     3661 ttctggtgaa tccgtgaata tatttaaaac aaagtctgtg actaaatggt gcattagtaa
     3721 cctttcctat tgtatatttt tgttagtttc tgtacagatt gtctctttgc tcttgatttc
     3781 tttgctttga tgatttctgc tacctgataa ctaatgcacc ttttgtgagg ggaggggatc
     3841 atgatttcag aatggattat gtatcacttc tccctcaggg ttctctcatt tgcactctgc
     3901 tcagttgttt tgtgtgttct caaatcagct gttacacttt ttataaaggt taaagattta
     3961 atccattgtg aaacacttaa ctggacaaac tttgtagttt agaaaattct agccagagtt
     4021 aatataagcc ttttcatgtg aaatcttgcc cagtcacaga ggtggaatcc agctctcgcg
     4081 ctcgcagaag ttcagttaag agttacactc acgggaggtg ccactccccc gtgaggcctc
     4141 atgcatctga gtgcttagtg ttgagtccag ccctgctggt gggggtaaag gggggcaagg
     4201 acctcaggcc tggagaattt aagaagcacg ttagctcgct tgaagtgtag attccatttc
     4261 agccaagcaa ggaaggagga aatggcgtct tttgaaggct gaggcaaggt ggccccaagt
     4321 tcattttgtt ttctaaagga tggtggcaac aatggactct tgggggctgc agcagcgagc
     4381 tgtgtttttg atctgcagga agttgttacc ccactcccac agggtctaga caaggaatcc
     4441 agagccatct gtggtggata ccctgccatc cgggaattag gttcttttat atatataggc
     4501 atgacatgac tgaagacctt ccccttcaca gttcctccac gcctgccacc cagttcacgg
     4561 tacaggggag ccccctcctt cccttctgaa ggtactgccc cccatccctc acccatcccc
     4621 tagtaccagg agccttgcga tctctctcca tctaataagt tattattcct ctttgcagaa
     4681 atacacctaa tattaatttt tagtatagaa aatcttgaga gtcatcaaaa taccttggtg
     4741 acggtcttgt tgccgaattg tccatagaag cagccatgtg tggaaccgga accaaagtgt
     4801 ctcagggtgt gttcccccac ctcacatatt gacatttaca gggaggggtc aggatttcct
     4861 tgttagcaat cgaaacctaa ttactagcat gcaagagtct ttattttatt gccagccata
     4921 gacattattt gaagtatgct ttttacagat atcatttgct gactcttagt aatgcctgat
     4981 taaaccaagc aacacttctg cacattttaa ttacctcgtg tggagagtcg tctgggggac
     5041 cgcagtcctg gaccatgtga accttttctg ttgctcttgc gtaaagagga tggagagcac
     5101 ctgtgcagga ccgtctttgc ttctccggct gtgatcctca ttccaaagat gagtgtttcc
     5161 tggtcagaag tgacgtgagg gagttaattc tgggagagaa aaattggctg gctctccaag
     5221 gccagtctag ggttggtctc ttgtgtttgt gtttcaccct gtggccaaag cacagaaccc
     5281 cctgaggctg gagagaggtt tacataccca gcagggaagg agccccctgc cagccctggc
     5341 ctgttgtcct tccagcacag aaagagctgg ggaagacatt cttaggtagg gcagggcttg
     5401 ctttggcctt gagctgcacc tcttctctgc ctttatccct aatcatagac aattggaaga
     5461 aaattgacct taaagaagtt tctctattgt cttactttga acactttctt gggtttagtt
     5521 agtggtcact ggaatttgat tctttggcat ttttccttgt agtcgcccgt taagcttttt
     5581 taagaccaag ttcacagggc gttctcagcc ttgtggtcca aagctctgta gtgtagctgt
     5641 tgtggaccgg gccaagggtt cagcaggcgg ggagccacct tccttagctg caacaatgga
     5701 caacctcctg atcccttcac ttttcaattg tcagaatttt tgcaattata agattagcgc
     5761 tgttaaacag gaatcaaagt ggcacccggg acttgttcac agtagagcct ggataatgac
     5821 tagtgtgact tgggcttaac tagcacctgc ttttctcacg gagcatctga gttactctga
     5881 cagaagatca gcttttgtaa ggagatgagc ctctgggcct tcctggttcc aaagctttct
     5941 ggctgtctct tctcccaggc caacagtctg ccccgggcaa caggtgtctc cattggcctt
     6001 ggacatctta tagtaccaag ttacccagag gacttcagag accagtagct cacacagaat
     6061 aacccaacag tgatgaaagg tgctttgtca ccacttctgt tctcttttca gtgtctcact
     6121 ctcaaaagga ggaccaaggt ccaaagccat tgccattttc cttttgtgcc cagagtaccc
     6181 aaagcccgag tgggaagcct ctgcctagga cagtgagtgg ccagtgcctg cagagagaat
     6241 gtcttcagag agagagagtg ccagtaaaga tgtgaatctg tatgacagtc tgtggacttg
     6301 actgcaacag caagaaaata tggcaagtta agtagttgta tatacagtag gtttccttag
     6361 gtctctttgg ctcatccttt gtaatttacg tgtgtatctg tagtgttgca ggcttttgga
     6421 gaatattgat agtatgtcag gcatcaaaga gtatgccttc tctcaccttc caatgtcgta
     6481 attgtaggta tttatagttg tatgtatcta tattgtatca atgtgtagat tgtacatcag
     6541 tatatggcat atgtacatca aatttatttt tgtccttaac cagtgtgata tgaaaagcaa
     6601 gtaaaaacct cataggattg aatatataat gcagtttttg agagtctata cagtggtact
     6661 gttttattaa acttaaattc aaatgatatt ttgattaatt tttttaatga taagatttta
     6721 tgctagaaaa tttcgtgata agattttatg ctagaaaatg agctttgaat caccagagca
     6781 aaaatggctc tgaactaact ttgttaaact atttcagtgt actgtgtaca atacccgggg
     6841 tggggctgta gctcattata atttgaaata tacagaaaga aagggaaaaa aaaaaaaaaa
     6901 cacaggcagc ctgtgcagtc ttagcaactt cagtattaag agcacttaaa cataaagtca
     6961 aactgacaat ttggggctta ttacaaaatg tgatgcttta aagcacacgt tctttattgt
     7021 tgtaattagt ccagaaaaat agagctttca gaacaattag ctaagtgccc agcgtatcat
     7081 ttatgttcct gtgtcagttt tacagcagcc caaaccaccc tcctagcact gcgtcctcat
     7141 cctcttcacc ttaaagaact gtcgccagcc ctgcagcaga tcagggcttc cagagatctg
     7201 ggactgccct ccaggcctgc ggttgcacaa attagcatct agacacaggt aaaagaattt
     7261 taggacaggc tatggaccag gttaaaactt tagtattttt atacttaggt ctcttttccg
     7321 gcctctcccc aaagaagagc cactggcctt agttgtctga gcttactgcc tatcttaaag
     7381 tatataagta ttagataact agagattaaa actttattag ccagcatgtt ggtatattta
     7441 aagcaaaact gagtgtgtgt gagtgagtgg ttgagtgcag tgtattcgtc tacgcacact
     7501 gcctgtcgtt cctcgtgtcc agttcagagg gtgggagtcg tgggctggga ggctcagctt
     7561 cagctccagg ctgcagtagt agtggtggtt acacttgcgt tttttaatta actctgcagt
     7621 ctcaaaccgt ttttgccaat gtatcctatt tcctaatctg tttttgaccg cgctgtgagt
     7681 tggctctgtg gctgcgcagc agggtctctg ttccacaaga gtgtgtttcc ttctaagaac
     7741 tatagtgatt tgcaaaagtg tccatttgac tcagaaatca tatacaaaag gaatatcaaa
     7801 attttaaagt ttcactctgg ggcttaatca tttgaaatgt ttggactttt aatataaagc
     7861 caagtaacca tttggcatgg ataataacat ctcctctgcg gagaggatgc atgctcactg
     7921 atttttaatg ccattaggac cctttcttaa gctgtaggaa caagagtcaa agtgaggatg
     7981 tggggagtgt gtgagcctct tgccttccgc agagggagac atgctgtggc ctgtcctccg
     8041 ctctgagaga tctggcgcac gtggagcctc ggcagtgtgt acatgcactt gcacgcgtgt
     8101 acacagcgag tgtcctaagt gacataaact tgagacccag agcgcccgag tgttgcgaga
     8161 ggtgtggacc aaggtgacag cggcccgcag gcccctcccg ggcgggcagg agttggagcc
     8221 ccgcatctga ccttgagatg ctgtgcgggg aggcgggtgg ctggcagttg ggggacgctc
     8281 atctcctgtc tggtggacct tcgctccccg gcgtcccgca gtggctggcg tggccatcgt
     8341 ccccagtggc gctgctgctc gctctgtagc tggttccttt gagaagggag tacggggagg
     8401 gggggtcaca gccttccccc caccaggctc ccctctgagc tggtggtggg gctggaaagg
     8461 ggaggagcct ggccacgatg ggtttccctt cgcagggtgg aggctcagct ttcacgaata
     8521 gtgctataaa aataagcacc ttactgtcag ttcctgaaaa tgctggttac tagggagaat
     8581 tttggagttt cccttaccat ttccccgagc accccccggg gagccccagg cacaagctca
     8641 gttcaggacc cactgtgggc ctgggctcct gctgggacgc cccctcagag gccggcatgc
     8701 acctctctgc agagggtttc ctcccagcct ccctcttcct gggctcctag gagcccaggg
     8761 ttggtccatg tgcaccttcc ctggctgcag ggatccagct gtcctcattg gctgaccctg
     8821 ctgagggtga ccgagtcact gcagtgacgc ttgacaaaag gtattaaaca attctctgac
     8881 tgaagacaag actgcatatt ttgcctttgc aagaaacaag atggcaggtt gaactataac
     8941 cggggatgga tgatctgttt gcctttgcac ctggatttct ggaaatggat aaggtttcgc
     9001 ttccgcggaa gggtcaaggg acgcagcccg ctgccgcgcg gttctcccca ggcccatgag
     9061 ccctgctggg cagaggcctg agtgcctccg tgcattcctc ctcccacccc cgccaccggc
     9121 ttcggagcct gtttctagag cagaagttga tgcagtggag agctggaacc gcagccttga
     9181 ttactgtagg gcaggcagag ggcagaggtt tgtatccttt actataaaac atgctttgaa
     9241 cttttccaat ctattaactg gattatgttt actggggttc aaactaattg gcagagtggg
     9301 tcagtccctt aaccttcaga gctttctcca ccagtcactt cagtttcatt ctagtcccgg
     9361 tgccatatgt ccctgaaatc gtgaaagtaa ttagtgataa aatagcagcc tactcatttt
     9421 cagtggccag actgtcagca ctggcagact tgggtgaggc cgtggcacca actccttagg
     9481 aaacctgttc ctcctcgccc accagattcg agaaatgctg tctcctagag aatcacggta
     9541 tttatggtgg tcatcttttg aatggaacag taatttatgt ggatactgtt aaagtgttta
     9601 aagaatattt tgaaaattaa gtttacattt tacgatcgct ttatttttta ttaaaatggt
     9661 tgtatataaa tattacccta tctcaccgtt gttgaaggaa agctaaccgt gcagaccagt
     9721 gagtcacctg atgtgtatag aagctgtgat gtatagagta catttctcta ctgtataaat
     9781 gctcatgaat ataactcttc ctgtgttttt ataagttggg gataatttgt tgctttacaa
     9841 caacaaaatt tattgcattt aaatggtttt tatgtaatag aaatcatgca aaatagtgaa
     9901 ggatttaaaa tatgtatatg atatatgtaa atgtacaaac tttagaaaga aataaatcca
     9961 acaaatttca
//
LOCUS       XM_032618450            3066 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DLG associated protein 2 (DLGAP2), mRNA.
ACCESSION   XM_032618450
VERSION     XM_032618450.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3066
                     /gene="DLGAP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 Proteins"
                     /db_xref="GeneID:116746764"
     CDS             127..3066
                     /gene="DLGAP2"
                     /codon_start=1
                     /product="disks large-associated protein 2"
                     /protein_id="XP_032474341.1"
                     /db_xref="GeneID:116746764"
                     /translation="MKGLPGSRNQPPLCSGHTCGLTPPEDCEHSHSYLHRGPEVRQPY
                     LLSPAESCPMERHRCSPRASVHSDCVMLPVALGDHVSSSTFPRMHYSSHYDTRDDCAV
                     AHAGAKTNRIPANLLDQFEKQLPLHRDGFHTLQYQRTSAAAEQRSESPGRIRHLVHSV
                     QKLFTKSHSLEGSSKGHVNGTKGDGRADEHAHGHHSKHGKRSKSRERKAEGRHRSGLS
                     SWWSSDDNLDSDSTYRASSVLSRHPADPVAHCYPDALAGPFGDLSLRISKSNSDVKCS
                     ACEGLALAPDAKYMKRSSWSTLTVSQAKEAYRKSSLHLDKPLGPPELKPPLRPCHYLQ
                     VPQDEWGGYPTGGKDEEIPCRRTRSGSYIKAMGDEESGESDSSPKMPPKVALRPEPLL
                     KSIGQRPPGDLQTQSYLQAASDGPAGHSLDPSANYSSPKFRSRNQSYMRAVSTLSQAS
                     CVSQMSEADVNGQLESVCESVFSEVESQAMDALDLPGGFRTRSHSYLRAIQAGYSQDD
                     ERIPMVIPSDVSSTARPSAAVSYTNYKKTPPPVPPRATSKPLISVTAQSSTESTQDAY
                     QDSRAQRMAPWPQDGRGLYNSTDSLDSNKAMSLALETAAAQRHAAEGQGGSARTSDKA
                     PLVSKAESFLQSRRSSIGVQDSEFPEHQPYPRSDVETATDSDTESRGLREYQSVGVQV
                     ENEKRCGRFKRSNSVTAAVQADLELEGFPGHVATEDKGLQFGSSFQRHSEPSTPTQYG
                     AVRTVRTQGLFSYREDYRTPVDTADLPPPDPWLEPSMDTVDGGRVSPCHRDGAWFLKL
                     LHSETKRMEGWCKEMEREAEENDLAEEILGKIRSAVGSAQLLMSQKFQQFYWLCQQNM
                     DPSAMPRPTSQDLAGYWDMLQLSVQDVSMKFDELHQLKLSDWKELASPERKEERKVPP
                     PIPKKPPKGKLPITREKSLDLPDRQRQEARRRLAAAKRAASFRQSSASERADSIEIYI
                     PEAQTRL"
     misc_feature    2032..3063
                     /gene="DLGAP2"
                     /note="Guanylate-kinase-associated protein (GKAP) protein;
                     Region: GKAP; pfam03359"
                     /db_xref="CDD:460897"
ORIGIN      
        1 ggcggggacc tggtccagcc gggcatcagc tttccggggc cggccaagga ggatctagac
       61 cagccgcact catggtcccc gactcagcac ttcaatgaag acaggtactc ccctgcgctg
      121 agggctatga aaggcttacc cgggagtcgg aaccagcccc cgctgtgctc cggccacacc
      181 tgtggcttga cgccccccga ggactgcgag cacagccaca gctacctgca ccgtggcccg
      241 gaggtgcggc agccctacct gctcagcccg gccgagagct gcccgatgga gcgtcaccgc
      301 tgctccccgc gggcctccgt ccactccgac tgcgtgatgc tgccggtggc actgggagac
      361 catgtgtcca gcagcacctt tccccggatg cactacagct cccactacga caccagggac
      421 gactgtgccg tggcccacgc tggcgccaag accaaccgga tcccggccaa cctgctggac
      481 cagttcgaga agcagctgcc cctgcacagg gacggcttcc acacgctgca gtaccagcgc
      541 acctccgcgg ctgccgagca gcgcagcgag agccccggcc gcatccgcca cctggtccac
      601 tccgtgcaga agctcttcac caagtcccac tccctggagg gctcgtccaa gggccacgtc
      661 aacggcacca agggggacgg ccgggcggac gagcacgccc acggccacca ctccaagcac
      721 ggcaaacgga gtaagagccg ggagcgcaag gccgagggcc ggcaccgctc ggggctcagc
      781 agctggtgga gctcggacga caacctggac agtgacagca cctaccgagc ctccagcgtg
      841 ctcagccgtc accccgccga ccccgtggcc cactgctacc ccgacgccct ggccggcccc
      901 ttcggggacc tctccctgag gatttccaag agcaacagcg acgtcaagtg ctcagcctgt
      961 gagggcctgg ccctggcgcc ggacgccaag tacatgaagc gcagctcctg gtccacactc
     1021 acagtgagcc aggccaagga ggcctaccgc aagagctccc tgcacctgga caagccgctg
     1081 gggcccccgg agctgaagcc gccactgcgg ccctgccact acctgcaggt gccccaggac
     1141 gagtggggag ggtaccccac ggggggcaaa gacgaggaaa ttccctgcag aaggacgagg
     1201 agtggcagtt acatcaaagc catgggtgac gaggaaagcg gggagtcgga ctccagcccc
     1261 aaaatgcccc ccaaggtggc gctccggcca gagcccctgc tcaagtccat cggacagagg
     1321 ccgccgggag acctccaaac ccagagctac ctgcaagctg ccagtgacgg gcctgccggc
     1381 cacagcctgg acccctctgc caactacagc tccccgaaat tccgctcccg gaaccagagc
     1441 tacatgcggg ccgtcagcac cctcagccag gccagctgcg tcagccagat gagcgaggcg
     1501 gacgtcaatg ggcagctcga gtcggtgtgt gaatccgtct tcagtgaagt ggagtctcag
     1561 gccatggacg ccctggacct cccgggaggc ttccgcacgc ggagtcacag ttacctccga
     1621 gccattcaag ctggttactc ccaagacgat gaacgtatcc ccatggtgat tccctctgac
     1681 gtcagctcaa ctgctagacc ctcggcagcc gtgtcctaca ccaactacaa aaagacacca
     1741 ccgcccgtac ccccccgcgc cacctccaag cctctgatct cggtgacggc acagagcagc
     1801 accgagtcca cgcaggacgc ctaccaggac agccgcgccc agaggatggc cccgtggccc
     1861 caggacggcc gcggcctcta caactccacg gacagtctgg acagcaacaa ggccatgagc
     1921 ctggccctgg agacggccgc ggcccagcgc catgccgccg agggccaggg cggctcggcg
     1981 cggaccagtg acaaggcccc cctcgtgtcc aaggctgaga gcttcctcca gagccggcgc
     2041 tcctccatcg gggtccagga ttctgaattc ccagagcatc agccataccc aaggtcagat
     2101 gtggaaacag ctaccgactc tgacacggag agccgtggcc tgcgggagta ccagtctgtt
     2161 ggcgtgcagg tggagaacga gaaacggtgc ggacgcttta agcgttccaa cagcgtgacg
     2221 gccgcggtgc aggcggacct ggagctggag ggcttcccag gacatgtcgc cacggaggac
     2281 aagggcctac agttcgggtc ctccttccag aggcactcgg agcccagcac cccgacccag
     2341 tacggggcgg tgcggaccgt ccggacccag gggctcttca gctaccgaga ggactatcgg
     2401 acccccgtgg acactgccga cctgccccct cccgacccct ggctggagcc gtccatggac
     2461 acggtggatg gcggccgcgt gtctccgtgc cacagggacg gcgcttggtt tctgaagctg
     2521 ctgcacagcg agacaaagag gatggaaggc tggtgcaaag agatggagag ggaagcggag
     2581 gagaacgacc tcgcggagga aattctcggg aaaatcagga gcgctgttgg cagtgcccag
     2641 cttctgatgt cgcagaaatt ccaacagttt tactggcttt gccaacagaa catggacccc
     2701 agcgccatgc ccaggcccac ctcgcaggac ctggccgggt actgggacat gctgcagctg
     2761 tccgtccagg acgtcagcat gaagtttgac gagctgcacc agctgaagct cagtgactgg
     2821 aaggagttgg cgtccccgga gaggaaggaa gaaagaaagg tcccccctcc aataccaaag
     2881 aagcccccca aagggaaact tcccatcacc cgagagaagt ctctggacct gccggacaga
     2941 cagcgccagg aggcccggag gcgtctggcg gccgccaaga gggcagcgtc cttccgccag
     3001 agctcggcca gcgagcgggc cgacagcatc gagatctaca tccccgaggc ccagacccgg
     3061 ctctag
//
LOCUS       XM_032618451            2907 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ASH2 like, histone lysine
            methyltransferase complex subunit (ASH2L), transcript variant X1,
            mRNA.
ACCESSION   XM_032618451
VERSION     XM_032618451.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2907
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2907
                     /gene="ASH2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746765"
     CDS             377..2272
                     /gene="ASH2L"
                     /codon_start=1
                     /product="set1/Ash2 histone methyltransferase complex
                     subunit ASH2 isoform X1"
                     /protein_id="XP_032474342.1"
                     /db_xref="GeneID:116746765"
                     /translation="MAAAGTVPGLGVNAGPGPAVAANATPAEEGETKPVVAVAAAPAG
                     EGTSAAPAAEPGSGEAESGDANSVDVSGGLETESSNGKDMLWTQEGAGDTSEVMDTQA
                     GSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTY
                     FLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPG
                     KMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQ
                     SSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGATGTTKKARSDPLFSAQRLPPHGYP
                     LEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRA
                     PQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL
                     QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYISLPEDTETAKSLPDT
                     YKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYF
                     PAISLYKSCTVSINFGPCFKYPPKDLMYRPMSDMGWGAVVEHTLADVLYHVETEVDGR
                     RSPPWEP"
     misc_feature    686..835
                     /gene="ASH2L"
                     /note="PHD finger found in Schizosaccharomyces pombe Set1
                     complex component ash2 (spAsh2p) and similar proteins;
                     Region: PHD_ash2p_like; cd15583"
                     /db_xref="CDD:277058"
     misc_feature    order(686..688,722..736,746..748,818..820)
                     /gene="ASH2L"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277058"
     misc_feature    1559..2134
                     /gene="ASH2L"
                     /note="SPRY domain in Ash2; Region: SPRY_Ash2; cd12872"
                     /db_xref="CDD:293932"
ORIGIN      
        1 agtctgcaat gcacatcaca gccttcaaag cctctaggct gccagcgctc tcaaggcgcc
       61 tcatccgcgc ggtgatttcg tcccggtcac gaaaatgcgc agcgtccacc ctgaaatgaa
      121 gtgagtccta gaggaaatcc aacgagtaat ctcatctcct ccgccttcac gtggctcggt
      181 ctgtagctac ccagccccga ggccccgccc acctctgtct gccctgccga ccttaaagcg
      241 tcggcttaga gcgcgccttc ccttggcagg ccgtgtactc actgagaatc tttactattt
      301 gaaggctaga gggccagtga gcgactcgcg cgagacgcag acagtattct cgcgagaagt
      361 ctgggaggcg gcagtgatgg cggcggcggg aaccgtaccc ggcctggggg tgaatgcagg
      421 acccggcccg gcagtggctg caaatgcaac accggcagaa gaaggggaaa cgaagccggt
      481 agtagcggta gcagccgctc cggccgggga ggggacgtct gctgctccag ccgcggagcc
      541 tggctctgga gaggccgaaa gcggggatgc aaactcagtt gatgtaagtg gtggcttgga
      601 gacagaatcc tctaatggaa aggatatgct atggacacag gaaggtgctg gggatacttc
      661 agaggtgatg gatactcagg cgggctccgt ggatgaagag aatggtcgcc agttgggaga
      721 ggtggagctg cagtgtggaa tatgtaccaa atggttcaca gcagacacct ttggcataga
      781 tacctcatcc tgtctacctt tcatgaccaa ctacagtttc cactgcaatg tatgccatca
      841 tagtgggaat acctacttcc tccggaagca agcaaacttg aaagaaatgt gccttagtgc
      901 tttggccaac ctaacctggc agtcccgaac acaggatgaa catccgaaaa ccatgttctc
      961 caaagataag gatatcatac catttattga taaatattgg gagtgcatga cgaccagaca
     1021 gagacctggg aaaatgacct ggccaaataa cattgttaaa acgatgagta aagaaagaga
     1081 tgtattctta gtaaaggaac accccgatcc tgggagtaag gacccagaag aagattaccc
     1141 caaatttggc cttctggatc aggatcttag taacattggt cctgcttatg acaaccaaaa
     1201 acaaagcagt gccgtgtcta ccagtgggaa tctaaatggg ggaattgcag cgggaagcag
     1261 tggaaaagga agaggagcta agcgcaagca gcaggatggc ggggccacag ggaccaccaa
     1321 gaaggcccgg agtgaccctt tgttttctgc tcagcgcctt ccccctcatg gctacccctt
     1381 ggaacaccca tttaacaaag atggctatcg gtatattcta gctgagcccg atccccacgc
     1441 ccctgaccct gagaagcttg aactcgactg ctgggcagga aaaccgattc ctggagacct
     1501 ctacagagcc tgcttgtatg aacgggtttt gttagcccta catgatcgag ctccccagtt
     1561 aaagatctcc gatgaccggc tgactgtggt tggagagaag ggctactcta tggttcgggc
     1621 ttctcatggg gttcggaaag gtgcctggta ctttgaaatc acggtggatg agatgccgcc
     1681 agacaccgct gccagactgg gctggtccca gccgttaggt aaccttcaag ctcccttagg
     1741 ttatgataaa tttagctatt cttggcggag caaaaagggg accaaattcc accagtccat
     1801 tggcaaacac tactcttctg gctatggaca gggagatgtc ctgggatttt atatcagtct
     1861 tcctgaagac acagagacag ccaagtcact gcccgatacc tataaagata aggctttgat
     1921 aaagttcaag agttatttgt attttgaaga aaaagacttt gtggataaag cagagaagag
     1981 cctaaagcag actccccata gcgagataat tttttataaa aatggtgtca atcaaggtgt
     2041 ggcttacaaa gatatttttg agggggttta ctttccggcc atctcgctgt acaagagctg
     2101 cacggtctcc attaacttcg gaccgtgctt caagtatcct ccaaaggatc tcatgtaccg
     2161 ccctatgagt gacatgggct ggggcgccgt ggtggaacac actctggctg acgtcttgta
     2221 tcacgtggaa acagaagtgg atgggaggcg gagtcccccg tgggaaccct gaccaagtcc
     2281 ctttttcttt gcagacacgg acttcctggg cataatatga gcgggttttg tttttgtttt
     2341 ttaactgtga caaatgtttt cctgaagata ctgcagaaca tggcctctgc tgtagcaaat
     2401 tagaggccgg gtgggtctga gagagactcc ttgcccttca gcactgtccc ttctatcacg
     2461 gcttttactt cgtgtgccat tcccaacagc tgccgaccct gggatcccat aagcgccctg
     2521 tgaactgggc ctgtgccatg taccccacca gctgagactt gctgcttact gtgttttcta
     2581 aggaatgggt aaccttgccc aagtagctaa catgtttaaa gacatgtcct tctgtgggca
     2641 ttgcctccat cctgcctggt tcccaaggaa gtggtgggcc tgtttctgag aacagctgaa
     2701 ctccatggct gtacattcca aatcagtcta acagctcttc cctttcaccg tgggtgtgtt
     2761 tttgttatta attttgaggt gtacctttga acactgggat ctatagtaga actatacttg
     2821 tgaagggaac ttgcttgcag ctttaacaat tagaaactct tcccaaataa aacttgtctt
     2881 cgagtgtgtg tggcactttg cttccct
//
LOCUS       XM_032618452            2852 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ASH2 like, histone lysine
            methyltransferase complex subunit (ASH2L), transcript variant X2,
            mRNA.
ACCESSION   XM_032618452
VERSION     XM_032618452.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2852
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2852
                     /gene="ASH2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746765"
     CDS             322..2217
                     /gene="ASH2L"
                     /codon_start=1
                     /product="set1/Ash2 histone methyltransferase complex
                     subunit ASH2 isoform X1"
                     /protein_id="XP_032474343.1"
                     /db_xref="GeneID:116746765"
                     /translation="MAAAGTVPGLGVNAGPGPAVAANATPAEEGETKPVVAVAAAPAG
                     EGTSAAPAAEPGSGEAESGDANSVDVSGGLETESSNGKDMLWTQEGAGDTSEVMDTQA
                     GSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTY
                     FLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPG
                     KMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQ
                     SSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGATGTTKKARSDPLFSAQRLPPHGYP
                     LEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRA
                     PQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL
                     QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYISLPEDTETAKSLPDT
                     YKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYF
                     PAISLYKSCTVSINFGPCFKYPPKDLMYRPMSDMGWGAVVEHTLADVLYHVETEVDGR
                     RSPPWEP"
     misc_feature    631..780
                     /gene="ASH2L"
                     /note="PHD finger found in Schizosaccharomyces pombe Set1
                     complex component ash2 (spAsh2p) and similar proteins;
                     Region: PHD_ash2p_like; cd15583"
                     /db_xref="CDD:277058"
     misc_feature    order(631..633,667..681,691..693,763..765)
                     /gene="ASH2L"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277058"
     misc_feature    1504..2079
                     /gene="ASH2L"
                     /note="SPRY domain in Ash2; Region: SPRY_Ash2; cd12872"
                     /db_xref="CDD:293932"
ORIGIN      
        1 aaagtcacaa aattaagccg cccatctcca gacgccacta ggaaacctgc tcaaagtggc
       61 agatcacgag ggcagtacaa caaactactt ctgggcggga agacgtttcc cacgtctaac
      121 ggtgaggaaa gtctgcaatg cacatcacag ccttcaaagc ctctaggctg ccagcgctct
      181 caaggcgcct catccgcgcg gtgatttcgt cccggtcacg aaaatgcgca gcgtccaccc
      241 tgaaatgaag ctagagggcc agtgagcgac tcgcgcgaga cgcagacagt attctcgcga
      301 gaagtctggg aggcggcagt gatggcggcg gcgggaaccg tacccggcct gggggtgaat
      361 gcaggacccg gcccggcagt ggctgcaaat gcaacaccgg cagaagaagg ggaaacgaag
      421 ccggtagtag cggtagcagc cgctccggcc ggggagggga cgtctgctgc tccagccgcg
      481 gagcctggct ctggagaggc cgaaagcggg gatgcaaact cagttgatgt aagtggtggc
      541 ttggagacag aatcctctaa tggaaaggat atgctatgga cacaggaagg tgctggggat
      601 acttcagagg tgatggatac tcaggcgggc tccgtggatg aagagaatgg tcgccagttg
      661 ggagaggtgg agctgcagtg tggaatatgt accaaatggt tcacagcaga cacctttggc
      721 atagatacct catcctgtct acctttcatg accaactaca gtttccactg caatgtatgc
      781 catcatagtg ggaataccta cttcctccgg aagcaagcaa acttgaaaga aatgtgcctt
      841 agtgctttgg ccaacctaac ctggcagtcc cgaacacagg atgaacatcc gaaaaccatg
      901 ttctccaaag ataaggatat cataccattt attgataaat attgggagtg catgacgacc
      961 agacagagac ctgggaaaat gacctggcca aataacattg ttaaaacgat gagtaaagaa
     1021 agagatgtat tcttagtaaa ggaacacccc gatcctggga gtaaggaccc agaagaagat
     1081 taccccaaat ttggccttct ggatcaggat cttagtaaca ttggtcctgc ttatgacaac
     1141 caaaaacaaa gcagtgccgt gtctaccagt gggaatctaa atgggggaat tgcagcggga
     1201 agcagtggaa aaggaagagg agctaagcgc aagcagcagg atggcggggc cacagggacc
     1261 accaagaagg cccggagtga ccctttgttt tctgctcagc gccttccccc tcatggctac
     1321 cccttggaac acccatttaa caaagatggc tatcggtata ttctagctga gcccgatccc
     1381 cacgcccctg accctgagaa gcttgaactc gactgctggg caggaaaacc gattcctgga
     1441 gacctctaca gagcctgctt gtatgaacgg gttttgttag ccctacatga tcgagctccc
     1501 cagttaaaga tctccgatga ccggctgact gtggttggag agaagggcta ctctatggtt
     1561 cgggcttctc atggggttcg gaaaggtgcc tggtactttg aaatcacggt ggatgagatg
     1621 ccgccagaca ccgctgccag actgggctgg tcccagccgt taggtaacct tcaagctccc
     1681 ttaggttatg ataaatttag ctattcttgg cggagcaaaa aggggaccaa attccaccag
     1741 tccattggca aacactactc ttctggctat ggacagggag atgtcctggg attttatatc
     1801 agtcttcctg aagacacaga gacagccaag tcactgcccg atacctataa agataaggct
     1861 ttgataaagt tcaagagtta tttgtatttt gaagaaaaag actttgtgga taaagcagag
     1921 aagagcctaa agcagactcc ccatagcgag ataatttttt ataaaaatgg tgtcaatcaa
     1981 ggtgtggctt acaaagatat ttttgagggg gtttactttc cggccatctc gctgtacaag
     2041 agctgcacgg tctccattaa cttcggaccg tgcttcaagt atcctccaaa ggatctcatg
     2101 taccgcccta tgagtgacat gggctggggc gccgtggtgg aacacactct ggctgacgtc
     2161 ttgtatcacg tggaaacaga agtggatggg aggcggagtc ccccgtggga accctgacca
     2221 agtccctttt tctttgcaga cacggacttc ctgggcataa tatgagcggg ttttgttttt
     2281 gttttttaac tgtgacaaat gttttcctga agatactgca gaacatggcc tctgctgtag
     2341 caaattagag gccgggtggg tctgagagag actccttgcc cttcagcact gtcccttcta
     2401 tcacggcttt tacttcgtgt gccattccca acagctgccg accctgggat cccataagcg
     2461 ccctgtgaac tgggcctgtg ccatgtaccc caccagctga gacttgctgc ttactgtgtt
     2521 ttctaaggaa tgggtaacct tgcccaagta gctaacatgt ttaaagacat gtccttctgt
     2581 gggcattgcc tccatcctgc ctggttccca aggaagtggt gggcctgttt ctgagaacag
     2641 ctgaactcca tggctgtaca ttccaaatca gtctaacagc tcttcccttt caccgtgggt
     2701 gtgtttttgt tattaatttt gaggtgtacc tttgaacact gggatctata gtagaactat
     2761 acttgtgaag ggaacttgct tgcagcttta acaattagaa actcttccca aataaaactt
     2821 gtcttcgagt gtgtgtggca ctttgcttcc ct
//
LOCUS       XM_032618453            2910 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ASH2 like, histone lysine
            methyltransferase complex subunit (ASH2L), transcript variant X3,
            mRNA.
ACCESSION   XM_032618453
VERSION     XM_032618453.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2910
                     /gene="ASH2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746765"
     CDS             380..2275
                     /gene="ASH2L"
                     /codon_start=1
                     /product="set1/Ash2 histone methyltransferase complex
                     subunit ASH2 isoform X1"
                     /protein_id="XP_032474344.1"
                     /db_xref="GeneID:116746765"
                     /translation="MAAAGTVPGLGVNAGPGPAVAANATPAEEGETKPVVAVAAAPAG
                     EGTSAAPAAEPGSGEAESGDANSVDVSGGLETESSNGKDMLWTQEGAGDTSEVMDTQA
                     GSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTY
                     FLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPG
                     KMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQ
                     SSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGATGTTKKARSDPLFSAQRLPPHGYP
                     LEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRA
                     PQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL
                     QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYISLPEDTETAKSLPDT
                     YKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYF
                     PAISLYKSCTVSINFGPCFKYPPKDLMYRPMSDMGWGAVVEHTLADVLYHVETEVDGR
                     RSPPWEP"
     misc_feature    689..838
                     /gene="ASH2L"
                     /note="PHD finger found in Schizosaccharomyces pombe Set1
                     complex component ash2 (spAsh2p) and similar proteins;
                     Region: PHD_ash2p_like; cd15583"
                     /db_xref="CDD:277058"
     misc_feature    order(689..691,725..739,749..751,821..823)
                     /gene="ASH2L"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277058"
     misc_feature    1562..2137
                     /gene="ASH2L"
                     /note="SPRY domain in Ash2; Region: SPRY_Ash2; cd12872"
                     /db_xref="CDD:293932"
ORIGIN      
        1 aaagtcacaa aattaagccg cccatctcca gacgccacta ggaaacctgc tcaaagtggc
       61 agatcacgag ggcagtacaa caaactactt ctgggcggga agacgtttcc cacgtctaac
      121 ggtgaggaaa gtctgcaatg cacatcacag ccttcaaagc ctctaggctg ccagcgctct
      181 caaggcgcct catccgcgcg gtgatttcgt cccggtcacg aaaatgcgca gcgtccaccc
      241 tgaaatgaag tgagtcctag aggaaatcca acgagtaatc tcatctcctc cgccttcacg
      301 tggctcggct agagggccag tgagcgactc gcgcgagacg cagacagtat tctcgcgaga
      361 agtctgggag gcggcagtga tggcggcggc gggaaccgta cccggcctgg gggtgaatgc
      421 aggacccggc ccggcagtgg ctgcaaatgc aacaccggca gaagaagggg aaacgaagcc
      481 ggtagtagcg gtagcagccg ctccggccgg ggaggggacg tctgctgctc cagccgcgga
      541 gcctggctct ggagaggccg aaagcgggga tgcaaactca gttgatgtaa gtggtggctt
      601 ggagacagaa tcctctaatg gaaaggatat gctatggaca caggaaggtg ctggggatac
      661 ttcagaggtg atggatactc aggcgggctc cgtggatgaa gagaatggtc gccagttggg
      721 agaggtggag ctgcagtgtg gaatatgtac caaatggttc acagcagaca cctttggcat
      781 agatacctca tcctgtctac ctttcatgac caactacagt ttccactgca atgtatgcca
      841 tcatagtggg aatacctact tcctccggaa gcaagcaaac ttgaaagaaa tgtgccttag
      901 tgctttggcc aacctaacct ggcagtcccg aacacaggat gaacatccga aaaccatgtt
      961 ctccaaagat aaggatatca taccatttat tgataaatat tgggagtgca tgacgaccag
     1021 acagagacct gggaaaatga cctggccaaa taacattgtt aaaacgatga gtaaagaaag
     1081 agatgtattc ttagtaaagg aacaccccga tcctgggagt aaggacccag aagaagatta
     1141 ccccaaattt ggccttctgg atcaggatct tagtaacatt ggtcctgctt atgacaacca
     1201 aaaacaaagc agtgccgtgt ctaccagtgg gaatctaaat gggggaattg cagcgggaag
     1261 cagtggaaaa ggaagaggag ctaagcgcaa gcagcaggat ggcggggcca cagggaccac
     1321 caagaaggcc cggagtgacc ctttgttttc tgctcagcgc cttccccctc atggctaccc
     1381 cttggaacac ccatttaaca aagatggcta tcggtatatt ctagctgagc ccgatcccca
     1441 cgcccctgac cctgagaagc ttgaactcga ctgctgggca ggaaaaccga ttcctggaga
     1501 cctctacaga gcctgcttgt atgaacgggt tttgttagcc ctacatgatc gagctcccca
     1561 gttaaagatc tccgatgacc ggctgactgt ggttggagag aagggctact ctatggttcg
     1621 ggcttctcat ggggttcgga aaggtgcctg gtactttgaa atcacggtgg atgagatgcc
     1681 gccagacacc gctgccagac tgggctggtc ccagccgtta ggtaaccttc aagctccctt
     1741 aggttatgat aaatttagct attcttggcg gagcaaaaag gggaccaaat tccaccagtc
     1801 cattggcaaa cactactctt ctggctatgg acagggagat gtcctgggat tttatatcag
     1861 tcttcctgaa gacacagaga cagccaagtc actgcccgat acctataaag ataaggcttt
     1921 gataaagttc aagagttatt tgtattttga agaaaaagac tttgtggata aagcagagaa
     1981 gagcctaaag cagactcccc atagcgagat aattttttat aaaaatggtg tcaatcaagg
     2041 tgtggcttac aaagatattt ttgagggggt ttactttccg gccatctcgc tgtacaagag
     2101 ctgcacggtc tccattaact tcggaccgtg cttcaagtat cctccaaagg atctcatgta
     2161 ccgccctatg agtgacatgg gctggggcgc cgtggtggaa cacactctgg ctgacgtctt
     2221 gtatcacgtg gaaacagaag tggatgggag gcggagtccc ccgtgggaac cctgaccaag
     2281 tccctttttc tttgcagaca cggacttcct gggcataata tgagcgggtt ttgtttttgt
     2341 tttttaactg tgacaaatgt tttcctgaag atactgcaga acatggcctc tgctgtagca
     2401 aattagaggc cgggtgggtc tgagagagac tccttgccct tcagcactgt cccttctatc
     2461 acggctttta cttcgtgtgc cattcccaac agctgccgac cctgggatcc cataagcgcc
     2521 ctgtgaactg ggcctgtgcc atgtacccca ccagctgaga cttgctgctt actgtgtttt
     2581 ctaaggaatg ggtaaccttg cccaagtagc taacatgttt aaagacatgt ccttctgtgg
     2641 gcattgcctc catcctgcct ggttcccaag gaagtggtgg gcctgtttct gagaacagct
     2701 gaactccatg gctgtacatt ccaaatcagt ctaacagctc ttccctttca ccgtgggtgt
     2761 gtttttgtta ttaattttga ggtgtacctt tgaacactgg gatctatagt agaactatac
     2821 ttgtgaaggg aacttgcttg cagctttaac aattagaaac tcttcccaaa taaaacttgt
     2881 cttcgagtgt gtgtggcact ttgcttccct
//
LOCUS       XM_032618454            2690 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ASH2 like, histone lysine
            methyltransferase complex subunit (ASH2L), transcript variant X4,
            mRNA.
ACCESSION   XM_032618454
VERSION     XM_032618454.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2690
                     /gene="ASH2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746765"
     CDS             163..2055
                     /gene="ASH2L"
                     /codon_start=1
                     /product="set1/Ash2 histone methyltransferase complex
                     subunit ASH2 isoform X2"
                     /protein_id="XP_032474345.1"
                     /db_xref="GeneID:116746765"
                     /translation="MAAAGTVPGLGVNAGPGPAVAANATPAEEGETKPVVAVAAAPAG
                     EGTSAAPAAEPGSGEAESGDANSVDVSGGLETESSNGKDMLTQEGAGDTSEVMDTQAG
                     SVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYF
                     LRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGK
                     MTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS
                     SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGATGTTKKARSDPLFSAQRLPPHGYPL
                     EHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAP
                     QLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQ
                     APLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYISLPEDTETAKSLPDTY
                     KDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFP
                     AISLYKSCTVSINFGPCFKYPPKDLMYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
                     SPPWEP"
     misc_feature    469..618
                     /gene="ASH2L"
                     /note="PHD finger found in Schizosaccharomyces pombe Set1
                     complex component ash2 (spAsh2p) and similar proteins;
                     Region: PHD_ash2p_like; cd15583"
                     /db_xref="CDD:277058"
     misc_feature    order(469..471,505..519,529..531,601..603)
                     /gene="ASH2L"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277058"
     misc_feature    1342..1917
                     /gene="ASH2L"
                     /note="SPRY domain in Ash2; Region: SPRY_Ash2; cd12872"
                     /db_xref="CDD:293932"
ORIGIN      
        1 ctgtctgccc tgccgacctt aaagcgtcgg cttagagcgc gccttccctt ggcaggccgt
       61 gtactcactg agaatcttta ctatttgaag gctagagggc cagtgagcga ctcgcgcgag
      121 acgcagacag tattctcgcg agaagtctgg gaggcggcag tgatggcggc ggcgggaacc
      181 gtacccggcc tgggggtgaa tgcaggaccc ggcccggcag tggctgcaaa tgcaacaccg
      241 gcagaagaag gggaaacgaa gccggtagta gcggtagcag ccgctccggc cggggagggg
      301 acgtctgctg ctccagccgc ggagcctggc tctggagagg ccgaaagcgg ggatgcaaac
      361 tcagttgatg taagtggtgg cttggagaca gaatcctcta atggaaagga tatgctaaca
      421 caggaaggtg ctggggatac ttcagaggtg atggatactc aggcgggctc cgtggatgaa
      481 gagaatggtc gccagttggg agaggtggag ctgcagtgtg gaatatgtac caaatggttc
      541 acagcagaca cctttggcat agatacctca tcctgtctac ctttcatgac caactacagt
      601 ttccactgca atgtatgcca tcatagtggg aatacctact tcctccggaa gcaagcaaac
      661 ttgaaagaaa tgtgccttag tgctttggcc aacctaacct ggcagtcccg aacacaggat
      721 gaacatccga aaaccatgtt ctccaaagat aaggatatca taccatttat tgataaatat
      781 tgggagtgca tgacgaccag acagagacct gggaaaatga cctggccaaa taacattgtt
      841 aaaacgatga gtaaagaaag agatgtattc ttagtaaagg aacaccccga tcctgggagt
      901 aaggacccag aagaagatta ccccaaattt ggccttctgg atcaggatct tagtaacatt
      961 ggtcctgctt atgacaacca aaaacaaagc agtgccgtgt ctaccagtgg gaatctaaat
     1021 gggggaattg cagcgggaag cagtggaaaa ggaagaggag ctaagcgcaa gcagcaggat
     1081 ggcggggcca cagggaccac caagaaggcc cggagtgacc ctttgttttc tgctcagcgc
     1141 cttccccctc atggctaccc cttggaacac ccatttaaca aagatggcta tcggtatatt
     1201 ctagctgagc ccgatcccca cgcccctgac cctgagaagc ttgaactcga ctgctgggca
     1261 ggaaaaccga ttcctggaga cctctacaga gcctgcttgt atgaacgggt tttgttagcc
     1321 ctacatgatc gagctcccca gttaaagatc tccgatgacc ggctgactgt ggttggagag
     1381 aagggctact ctatggttcg ggcttctcat ggggttcgga aaggtgcctg gtactttgaa
     1441 atcacggtgg atgagatgcc gccagacacc gctgccagac tgggctggtc ccagccgtta
     1501 ggtaaccttc aagctccctt aggttatgat aaatttagct attcttggcg gagcaaaaag
     1561 gggaccaaat tccaccagtc cattggcaaa cactactctt ctggctatgg acagggagat
     1621 gtcctgggat tttatatcag tcttcctgaa gacacagaga cagccaagtc actgcccgat
     1681 acctataaag ataaggcttt gataaagttc aagagttatt tgtattttga agaaaaagac
     1741 tttgtggata aagcagagaa gagcctaaag cagactcccc atagcgagat aattttttat
     1801 aaaaatggtg tcaatcaagg tgtggcttac aaagatattt ttgagggggt ttactttccg
     1861 gccatctcgc tgtacaagag ctgcacggtc tccattaact tcggaccgtg cttcaagtat
     1921 cctccaaagg atctcatgta ccgccctatg agtgacatgg gctggggcgc cgtggtggaa
     1981 cacactctgg ctgacgtctt gtatcacgtg gaaacagaag tggatgggag gcggagtccc
     2041 ccgtgggaac cctgaccaag tccctttttc tttgcagaca cggacttcct gggcataata
     2101 tgagcgggtt ttgtttttgt tttttaactg tgacaaatgt tttcctgaag atactgcaga
     2161 acatggcctc tgctgtagca aattagaggc cgggtgggtc tgagagagac tccttgccct
     2221 tcagcactgt cccttctatc acggctttta cttcgtgtgc cattcccaac agctgccgac
     2281 cctgggatcc cataagcgcc ctgtgaactg ggcctgtgcc atgtacccca ccagctgaga
     2341 cttgctgctt actgtgtttt ctaaggaatg ggtaaccttg cccaagtagc taacatgttt
     2401 aaagacatgt ccttctgtgg gcattgcctc catcctgcct ggttcccaag gaagtggtgg
     2461 gcctgtttct gagaacagct gaactccatg gctgtacatt ccaaatcagt ctaacagctc
     2521 ttccctttca ccgtgggtgt gtttttgtta ttaattttga ggtgtacctt tgaacactgg
     2581 gatctatagt agaactatac ttgtgaaggg aacttgcttg cagctttaac aattagaaac
     2641 tcttcccaaa taaaacttgt cttcgagtgt gtgtggcact ttgcttccct
//
LOCUS       XM_032618455            2684 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ASH2 like, histone lysine
            methyltransferase complex subunit (ASH2L), transcript variant X5,
            mRNA.
ACCESSION   XM_032618455
VERSION     XM_032618455.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2684
                     /gene="ASH2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 4 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746765"
     CDS             163..2049
                     /gene="ASH2L"
                     /codon_start=1
                     /product="set1/Ash2 histone methyltransferase complex
                     subunit ASH2 isoform X3"
                     /protein_id="XP_032474346.1"
                     /db_xref="GeneID:116746765"
                     /translation="MAAAGTVPGLGVNAGPGPAVAANATPAEEGETKPVVAVAAAPAG
                     EGTSAAPAAEPGSGEAESGDANSVDVSGGLETESSNGKDMLEGAGDTSEVMDTQAGSV
                     DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLR
                     KQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMT
                     WPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSA
                     VSTSGNLNGGIAAGSSGKGRGAKRKQQDGGATGTTKKARSDPLFSAQRLPPHGYPLEH
                     PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQL
                     KISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAP
                     LGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYISLPEDTETAKSLPDTYKD
                     KALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAI
                     SLYKSCTVSINFGPCFKYPPKDLMYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSP
                     PWEP"
     misc_feature    463..612
                     /gene="ASH2L"
                     /note="PHD finger found in Schizosaccharomyces pombe Set1
                     complex component ash2 (spAsh2p) and similar proteins;
                     Region: PHD_ash2p_like; cd15583"
                     /db_xref="CDD:277058"
     misc_feature    order(463..465,499..513,523..525,595..597)
                     /gene="ASH2L"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277058"
     misc_feature    1336..1911
                     /gene="ASH2L"
                     /note="SPRY domain in Ash2; Region: SPRY_Ash2; cd12872"
                     /db_xref="CDD:293932"
ORIGIN      
        1 ctgtctgccc tgccgacctt aaagcgtcgg cttagagcgc gccttccctt ggcaggccgt
       61 gtactcactg agaatcttta ctatttgaag gctagagggc cagtgagcga ctcgcgcgag
      121 acgcagacag tattctcgcg agaagtctgg gaggcggcag tgatggcggc ggcgggaacc
      181 gtacccggcc tgggggtgaa tgcaggaccc ggcccggcag tggctgcaaa tgcaacaccg
      241 gcagaagaag gggaaacgaa gccggtagta gcggtagcag ccgctccggc cggggagggg
      301 acgtctgctg ctccagccgc ggagcctggc tctggagagg ccgaaagcgg ggatgcaaac
      361 tcagttgatg taagtggtgg cttggagaca gaatcctcta atggaaagga tatgctagaa
      421 ggtgctgggg atacttcaga ggtgatggat actcaggcgg gctccgtgga tgaagagaat
      481 ggtcgccagt tgggagaggt ggagctgcag tgtggaatat gtaccaaatg gttcacagca
      541 gacacctttg gcatagatac ctcatcctgt ctacctttca tgaccaacta cagtttccac
      601 tgcaatgtat gccatcatag tgggaatacc tacttcctcc ggaagcaagc aaacttgaaa
      661 gaaatgtgcc ttagtgcttt ggccaaccta acctggcagt cccgaacaca ggatgaacat
      721 ccgaaaacca tgttctccaa agataaggat atcataccat ttattgataa atattgggag
      781 tgcatgacga ccagacagag acctgggaaa atgacctggc caaataacat tgttaaaacg
      841 atgagtaaag aaagagatgt attcttagta aaggaacacc ccgatcctgg gagtaaggac
      901 ccagaagaag attaccccaa atttggcctt ctggatcagg atcttagtaa cattggtcct
      961 gcttatgaca accaaaaaca aagcagtgcc gtgtctacca gtgggaatct aaatggggga
     1021 attgcagcgg gaagcagtgg aaaaggaaga ggagctaagc gcaagcagca ggatggcggg
     1081 gccacaggga ccaccaagaa ggcccggagt gaccctttgt tttctgctca gcgccttccc
     1141 cctcatggct accccttgga acacccattt aacaaagatg gctatcggta tattctagct
     1201 gagcccgatc cccacgcccc tgaccctgag aagcttgaac tcgactgctg ggcaggaaaa
     1261 ccgattcctg gagacctcta cagagcctgc ttgtatgaac gggttttgtt agccctacat
     1321 gatcgagctc cccagttaaa gatctccgat gaccggctga ctgtggttgg agagaagggc
     1381 tactctatgg ttcgggcttc tcatggggtt cggaaaggtg cctggtactt tgaaatcacg
     1441 gtggatgaga tgccgccaga caccgctgcc agactgggct ggtcccagcc gttaggtaac
     1501 cttcaagctc ccttaggtta tgataaattt agctattctt ggcggagcaa aaaggggacc
     1561 aaattccacc agtccattgg caaacactac tcttctggct atggacaggg agatgtcctg
     1621 ggattttata tcagtcttcc tgaagacaca gagacagcca agtcactgcc cgatacctat
     1681 aaagataagg ctttgataaa gttcaagagt tatttgtatt ttgaagaaaa agactttgtg
     1741 gataaagcag agaagagcct aaagcagact ccccatagcg agataatttt ttataaaaat
     1801 ggtgtcaatc aaggtgtggc ttacaaagat atttttgagg gggtttactt tccggccatc
     1861 tcgctgtaca agagctgcac ggtctccatt aacttcggac cgtgcttcaa gtatcctcca
     1921 aaggatctca tgtaccgccc tatgagtgac atgggctggg gcgccgtggt ggaacacact
     1981 ctggctgacg tcttgtatca cgtggaaaca gaagtggatg ggaggcggag tcccccgtgg
     2041 gaaccctgac caagtccctt tttctttgca gacacggact tcctgggcat aatatgagcg
     2101 ggttttgttt ttgtttttta actgtgacaa atgttttcct gaagatactg cagaacatgg
     2161 cctctgctgt agcaaattag aggccgggtg ggtctgagag agactccttg cccttcagca
     2221 ctgtcccttc tatcacggct tttacttcgt gtgccattcc caacagctgc cgaccctggg
     2281 atcccataag cgccctgtga actgggcctg tgccatgtac cccaccagct gagacttgct
     2341 gcttactgtg ttttctaagg aatgggtaac cttgcccaag tagctaacat gtttaaagac
     2401 atgtccttct gtgggcattg cctccatcct gcctggttcc caaggaagtg gtgggcctgt
     2461 ttctgagaac agctgaactc catggctgta cattccaaat cagtctaaca gctcttccct
     2521 ttcaccgtgg gtgtgttttt gttattaatt ttgaggtgta cctttgaaca ctgggatcta
     2581 tagtagaact atacttgtga agggaacttg cttgcagctt taacaattag aaactcttcc
     2641 caaataaaac ttgtcttcga gtgtgtgtgg cactttgctt ccct
//
LOCUS       XM_032618456            2649 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ASH2 like, histone lysine
            methyltransferase complex subunit (ASH2L), transcript variant X6,
            mRNA.
ACCESSION   XM_032618456
VERSION     XM_032618456.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2649
                     /gene="ASH2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746765"
     CDS             368..2014
                     /gene="ASH2L"
                     /codon_start=1
                     /product="set1/Ash2 histone methyltransferase complex
                     subunit ASH2 isoform X4"
                     /protein_id="XP_032474347.1"
                     /db_xref="GeneID:116746765"
                     /translation="MLWTQEGAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWF
                     TADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRT
                     QDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHP
                     DPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGA
                     KRKQQDGGATGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPE
                     KLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASH
                     GVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSI
                     GKHYSSGYGQGDVLGFYISLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAE
                     KSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKD
                     LMYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP"
     misc_feature    428..577
                     /gene="ASH2L"
                     /note="PHD finger found in Schizosaccharomyces pombe Set1
                     complex component ash2 (spAsh2p) and similar proteins;
                     Region: PHD_ash2p_like; cd15583"
                     /db_xref="CDD:277058"
     misc_feature    order(428..430,464..478,488..490,560..562)
                     /gene="ASH2L"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277058"
     misc_feature    1301..1876
                     /gene="ASH2L"
                     /note="SPRY domain in Ash2; Region: SPRY_Ash2; cd12872"
                     /db_xref="CDD:293932"
ORIGIN      
        1 gctcgcccgg ctccctcccg gaccttattc ccgctcgccg cttggcctgt cccctctgaa
       61 ctgtatctca ggctacgcct ctttcgcacc ttttaggcca agtttctcct cctacctccc
      121 ggcccttgca caccagcagg gtgctgatag gtcactttct agcaggaacc cttcaaaaat
      181 cccagagagg aaaccacttt gcgctgccag actggtggaa gtaatggtcc ctctgaaaac
      241 agagcggaaa agctgcatct cttcgaacct cccccaggac cagttccatc ccctgtagac
      301 ttgtctggat gcaaactcag ttgatgtaag tggtggcttg gagacagaat cctctaatgg
      361 aaaggatatg ctatggacac aggaaggtgc tggggatact tcagaggtga tggatactca
      421 ggcgggctcc gtggatgaag agaatggtcg ccagttggga gaggtggagc tgcagtgtgg
      481 aatatgtacc aaatggttca cagcagacac ctttggcata gatacctcat cctgtctacc
      541 tttcatgacc aactacagtt tccactgcaa tgtatgccat catagtggga atacctactt
      601 cctccggaag caagcaaact tgaaagaaat gtgccttagt gctttggcca acctaacctg
      661 gcagtcccga acacaggatg aacatccgaa aaccatgttc tccaaagata aggatatcat
      721 accatttatt gataaatatt gggagtgcat gacgaccaga cagagacctg ggaaaatgac
      781 ctggccaaat aacattgtta aaacgatgag taaagaaaga gatgtattct tagtaaagga
      841 acaccccgat cctgggagta aggacccaga agaagattac cccaaatttg gccttctgga
      901 tcaggatctt agtaacattg gtcctgctta tgacaaccaa aaacaaagca gtgccgtgtc
      961 taccagtggg aatctaaatg ggggaattgc agcgggaagc agtggaaaag gaagaggagc
     1021 taagcgcaag cagcaggatg gcggggccac agggaccacc aagaaggccc ggagtgaccc
     1081 tttgttttct gctcagcgcc ttccccctca tggctacccc ttggaacacc catttaacaa
     1141 agatggctat cggtatattc tagctgagcc cgatccccac gcccctgacc ctgagaagct
     1201 tgaactcgac tgctgggcag gaaaaccgat tcctggagac ctctacagag cctgcttgta
     1261 tgaacgggtt ttgttagccc tacatgatcg agctccccag ttaaagatct ccgatgaccg
     1321 gctgactgtg gttggagaga agggctactc tatggttcgg gcttctcatg gggttcggaa
     1381 aggtgcctgg tactttgaaa tcacggtgga tgagatgccg ccagacaccg ctgccagact
     1441 gggctggtcc cagccgttag gtaaccttca agctccctta ggttatgata aatttagcta
     1501 ttcttggcgg agcaaaaagg ggaccaaatt ccaccagtcc attggcaaac actactcttc
     1561 tggctatgga cagggagatg tcctgggatt ttatatcagt cttcctgaag acacagagac
     1621 agccaagtca ctgcccgata cctataaaga taaggctttg ataaagttca agagttattt
     1681 gtattttgaa gaaaaagact ttgtggataa agcagagaag agcctaaagc agactcccca
     1741 tagcgagata attttttata aaaatggtgt caatcaaggt gtggcttaca aagatatttt
     1801 tgagggggtt tactttccgg ccatctcgct gtacaagagc tgcacggtct ccattaactt
     1861 cggaccgtgc ttcaagtatc ctccaaagga tctcatgtac cgccctatga gtgacatggg
     1921 ctggggcgcc gtggtggaac acactctggc tgacgtcttg tatcacgtgg aaacagaagt
     1981 ggatgggagg cggagtcccc cgtgggaacc ctgaccaagt ccctttttct ttgcagacac
     2041 ggacttcctg ggcataatat gagcgggttt tgtttttgtt ttttaactgt gacaaatgtt
     2101 ttcctgaaga tactgcagaa catggcctct gctgtagcaa attagaggcc gggtgggtct
     2161 gagagagact ccttgccctt cagcactgtc ccttctatca cggcttttac ttcgtgtgcc
     2221 attcccaaca gctgccgacc ctgggatccc ataagcgccc tgtgaactgg gcctgtgcca
     2281 tgtaccccac cagctgagac ttgctgctta ctgtgttttc taaggaatgg gtaaccttgc
     2341 ccaagtagct aacatgttta aagacatgtc cttctgtggg cattgcctcc atcctgcctg
     2401 gttcccaagg aagtggtggg cctgtttctg agaacagctg aactccatgg ctgtacattc
     2461 caaatcagtc taacagctct tccctttcac cgtgggtgtg tttttgttat taattttgag
     2521 gtgtaccttt gaacactggg atctatagta gaactatact tgtgaaggga acttgcttgc
     2581 agctttaaca attagaaact cttcccaaat aaaacttgtc ttcgagtgtg tgtggcactt
     2641 tgcttccct
//
LOCUS       XM_032618457            2646 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ASH2 like, histone lysine
            methyltransferase complex subunit (ASH2L), transcript variant X7,
            mRNA.
ACCESSION   XM_032618457
VERSION     XM_032618457.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2646
                     /gene="ASH2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746765"
     CDS             368..2011
                     /gene="ASH2L"
                     /codon_start=1
                     /product="set1/Ash2 histone methyltransferase complex
                     subunit ASH2 isoform X5"
                     /protein_id="XP_032474348.1"
                     /db_xref="GeneID:116746765"
                     /translation="MLTQEGAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFT
                     ADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQ
                     DEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPD
                     PGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAK
                     RKQQDGGATGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEK
                     LELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHG
                     VRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIG
                     KHYSSGYGQGDVLGFYISLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEK
                     SLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDL
                     MYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP"
     misc_feature    425..574
                     /gene="ASH2L"
                     /note="PHD finger found in Schizosaccharomyces pombe Set1
                     complex component ash2 (spAsh2p) and similar proteins;
                     Region: PHD_ash2p_like; cd15583"
                     /db_xref="CDD:277058"
     misc_feature    order(425..427,461..475,485..487,557..559)
                     /gene="ASH2L"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277058"
     misc_feature    1298..1873
                     /gene="ASH2L"
                     /note="SPRY domain in Ash2; Region: SPRY_Ash2; cd12872"
                     /db_xref="CDD:293932"
ORIGIN      
        1 gctcgcccgg ctccctcccg gaccttattc ccgctcgccg cttggcctgt cccctctgaa
       61 ctgtatctca ggctacgcct ctttcgcacc ttttaggcca agtttctcct cctacctccc
      121 ggcccttgca caccagcagg gtgctgatag gtcactttct agcaggaacc cttcaaaaat
      181 cccagagagg aaaccacttt gcgctgccag actggtggaa gtaatggtcc ctctgaaaac
      241 agagcggaaa agctgcatct cttcgaacct cccccaggac cagttccatc ccctgtagac
      301 ttgtctggat gcaaactcag ttgatgtaag tggtggcttg gagacagaat cctctaatgg
      361 aaaggatatg ctaacacagg aaggtgctgg ggatacttca gaggtgatgg atactcaggc
      421 gggctccgtg gatgaagaga atggtcgcca gttgggagag gtggagctgc agtgtggaat
      481 atgtaccaaa tggttcacag cagacacctt tggcatagat acctcatcct gtctaccttt
      541 catgaccaac tacagtttcc actgcaatgt atgccatcat agtgggaata cctacttcct
      601 ccggaagcaa gcaaacttga aagaaatgtg ccttagtgct ttggccaacc taacctggca
      661 gtcccgaaca caggatgaac atccgaaaac catgttctcc aaagataagg atatcatacc
      721 atttattgat aaatattggg agtgcatgac gaccagacag agacctggga aaatgacctg
      781 gccaaataac attgttaaaa cgatgagtaa agaaagagat gtattcttag taaaggaaca
      841 ccccgatcct gggagtaagg acccagaaga agattacccc aaatttggcc ttctggatca
      901 ggatcttagt aacattggtc ctgcttatga caaccaaaaa caaagcagtg ccgtgtctac
      961 cagtgggaat ctaaatgggg gaattgcagc gggaagcagt ggaaaaggaa gaggagctaa
     1021 gcgcaagcag caggatggcg gggccacagg gaccaccaag aaggcccgga gtgacccttt
     1081 gttttctgct cagcgccttc cccctcatgg ctaccccttg gaacacccat ttaacaaaga
     1141 tggctatcgg tatattctag ctgagcccga tccccacgcc cctgaccctg agaagcttga
     1201 actcgactgc tgggcaggaa aaccgattcc tggagacctc tacagagcct gcttgtatga
     1261 acgggttttg ttagccctac atgatcgagc tccccagtta aagatctccg atgaccggct
     1321 gactgtggtt ggagagaagg gctactctat ggttcgggct tctcatgggg ttcggaaagg
     1381 tgcctggtac tttgaaatca cggtggatga gatgccgcca gacaccgctg ccagactggg
     1441 ctggtcccag ccgttaggta accttcaagc tcccttaggt tatgataaat ttagctattc
     1501 ttggcggagc aaaaagggga ccaaattcca ccagtccatt ggcaaacact actcttctgg
     1561 ctatggacag ggagatgtcc tgggatttta tatcagtctt cctgaagaca cagagacagc
     1621 caagtcactg cccgatacct ataaagataa ggctttgata aagttcaaga gttatttgta
     1681 ttttgaagaa aaagactttg tggataaagc agagaagagc ctaaagcaga ctccccatag
     1741 cgagataatt ttttataaaa atggtgtcaa tcaaggtgtg gcttacaaag atatttttga
     1801 gggggtttac tttccggcca tctcgctgta caagagctgc acggtctcca ttaacttcgg
     1861 accgtgcttc aagtatcctc caaaggatct catgtaccgc cctatgagtg acatgggctg
     1921 gggcgccgtg gtggaacaca ctctggctga cgtcttgtat cacgtggaaa cagaagtgga
     1981 tgggaggcgg agtcccccgt gggaaccctg accaagtccc tttttctttg cagacacgga
     2041 cttcctgggc ataatatgag cgggttttgt ttttgttttt taactgtgac aaatgttttc
     2101 ctgaagatac tgcagaacat ggcctctgct gtagcaaatt agaggccggg tgggtctgag
     2161 agagactcct tgcccttcag cactgtccct tctatcacgg cttttacttc gtgtgccatt
     2221 cccaacagct gccgaccctg ggatcccata agcgccctgt gaactgggcc tgtgccatgt
     2281 accccaccag ctgagacttg ctgcttactg tgttttctaa ggaatgggta accttgccca
     2341 agtagctaac atgtttaaag acatgtcctt ctgtgggcat tgcctccatc ctgcctggtt
     2401 cccaaggaag tggtgggcct gtttctgaga acagctgaac tccatggctg tacattccaa
     2461 atcagtctaa cagctcttcc ctttcaccgt gggtgtgttt ttgttattaa ttttgaggtg
     2521 tacctttgaa cactgggatc tatagtagaa ctatacttgt gaagggaact tgcttgcagc
     2581 tttaacaatt agaaactctt cccaaataaa acttgtcttc gagtgtgtgt ggcactttgc
     2641 ttccct
//
LOCUS       XM_032618458            2640 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ASH2 like, histone lysine
            methyltransferase complex subunit (ASH2L), transcript variant X8,
            mRNA.
ACCESSION   XM_032618458
VERSION     XM_032618458.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2640
                     /gene="ASH2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746765"
     CDS             368..2005
                     /gene="ASH2L"
                     /codon_start=1
                     /product="set1/Ash2 histone methyltransferase complex
                     subunit ASH2 isoform X6"
                     /protein_id="XP_032474349.1"
                     /db_xref="GeneID:116746765"
                     /translation="MLEGAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTAD
                     TFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDE
                     HPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPG
                     SKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKRK
                     QQDGGATGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLE
                     LDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVR
                     KGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKH
                     YSSGYGQGDVLGFYISLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSL
                     KQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLMY
                     RPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP"
     misc_feature    419..568
                     /gene="ASH2L"
                     /note="PHD finger found in Schizosaccharomyces pombe Set1
                     complex component ash2 (spAsh2p) and similar proteins;
                     Region: PHD_ash2p_like; cd15583"
                     /db_xref="CDD:277058"
     misc_feature    order(419..421,455..469,479..481,551..553)
                     /gene="ASH2L"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:277058"
     misc_feature    1292..1867
                     /gene="ASH2L"
                     /note="SPRY domain in Ash2; Region: SPRY_Ash2; cd12872"
                     /db_xref="CDD:293932"
ORIGIN      
        1 gctcgcccgg ctccctcccg gaccttattc ccgctcgccg cttggcctgt cccctctgaa
       61 ctgtatctca ggctacgcct ctttcgcacc ttttaggcca agtttctcct cctacctccc
      121 ggcccttgca caccagcagg gtgctgatag gtcactttct agcaggaacc cttcaaaaat
      181 cccagagagg aaaccacttt gcgctgccag actggtggaa gtaatggtcc ctctgaaaac
      241 agagcggaaa agctgcatct cttcgaacct cccccaggac cagttccatc ccctgtagac
      301 ttgtctggat gcaaactcag ttgatgtaag tggtggcttg gagacagaat cctctaatgg
      361 aaaggatatg ctagaaggtg ctggggatac ttcagaggtg atggatactc aggcgggctc
      421 cgtggatgaa gagaatggtc gccagttggg agaggtggag ctgcagtgtg gaatatgtac
      481 caaatggttc acagcagaca cctttggcat agatacctca tcctgtctac ctttcatgac
      541 caactacagt ttccactgca atgtatgcca tcatagtggg aatacctact tcctccggaa
      601 gcaagcaaac ttgaaagaaa tgtgccttag tgctttggcc aacctaacct ggcagtcccg
      661 aacacaggat gaacatccga aaaccatgtt ctccaaagat aaggatatca taccatttat
      721 tgataaatat tgggagtgca tgacgaccag acagagacct gggaaaatga cctggccaaa
      781 taacattgtt aaaacgatga gtaaagaaag agatgtattc ttagtaaagg aacaccccga
      841 tcctgggagt aaggacccag aagaagatta ccccaaattt ggccttctgg atcaggatct
      901 tagtaacatt ggtcctgctt atgacaacca aaaacaaagc agtgccgtgt ctaccagtgg
      961 gaatctaaat gggggaattg cagcgggaag cagtggaaaa ggaagaggag ctaagcgcaa
     1021 gcagcaggat ggcggggcca cagggaccac caagaaggcc cggagtgacc ctttgttttc
     1081 tgctcagcgc cttccccctc atggctaccc cttggaacac ccatttaaca aagatggcta
     1141 tcggtatatt ctagctgagc ccgatcccca cgcccctgac cctgagaagc ttgaactcga
     1201 ctgctgggca ggaaaaccga ttcctggaga cctctacaga gcctgcttgt atgaacgggt
     1261 tttgttagcc ctacatgatc gagctcccca gttaaagatc tccgatgacc ggctgactgt
     1321 ggttggagag aagggctact ctatggttcg ggcttctcat ggggttcgga aaggtgcctg
     1381 gtactttgaa atcacggtgg atgagatgcc gccagacacc gctgccagac tgggctggtc
     1441 ccagccgtta ggtaaccttc aagctccctt aggttatgat aaatttagct attcttggcg
     1501 gagcaaaaag gggaccaaat tccaccagtc cattggcaaa cactactctt ctggctatgg
     1561 acagggagat gtcctgggat tttatatcag tcttcctgaa gacacagaga cagccaagtc
     1621 actgcccgat acctataaag ataaggcttt gataaagttc aagagttatt tgtattttga
     1681 agaaaaagac tttgtggata aagcagagaa gagcctaaag cagactcccc atagcgagat
     1741 aattttttat aaaaatggtg tcaatcaagg tgtggcttac aaagatattt ttgagggggt
     1801 ttactttccg gccatctcgc tgtacaagag ctgcacggtc tccattaact tcggaccgtg
     1861 cttcaagtat cctccaaagg atctcatgta ccgccctatg agtgacatgg gctggggcgc
     1921 cgtggtggaa cacactctgg ctgacgtctt gtatcacgtg gaaacagaag tggatgggag
     1981 gcggagtccc ccgtgggaac cctgaccaag tccctttttc tttgcagaca cggacttcct
     2041 gggcataata tgagcgggtt ttgtttttgt tttttaactg tgacaaatgt tttcctgaag
     2101 atactgcaga acatggcctc tgctgtagca aattagaggc cgggtgggtc tgagagagac
     2161 tccttgccct tcagcactgt cccttctatc acggctttta cttcgtgtgc cattcccaac
     2221 agctgccgac cctgggatcc cataagcgcc ctgtgaactg ggcctgtgcc atgtacccca
     2281 ccagctgaga cttgctgctt actgtgtttt ctaaggaatg ggtaaccttg cccaagtagc
     2341 taacatgttt aaagacatgt ccttctgtgg gcattgcctc catcctgcct ggttcccaag
     2401 gaagtggtgg gcctgtttct gagaacagct gaactccatg gctgtacatt ccaaatcagt
     2461 ctaacagctc ttccctttca ccgtgggtgt gtttttgtta ttaattttga ggtgtacctt
     2521 tgaacactgg gatctatagt agaactatac ttgtgaaggg aacttgcttg cagctttaac
     2581 aattagaaac tcttcccaaa taaaacttgt cttcgagtgt gtgtggcact ttgcttccct
//
LOCUS       XM_032618460            2764 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus steroidogenic acute regulatory protein
            (STAR), transcript variant X1, mRNA.
ACCESSION   XM_032618460
VERSION     XM_032618460.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2764
                     /gene="STAR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 19 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746766"
     CDS             928..1938
                     /gene="STAR"
                     /codon_start=1
                     /product="steroidogenic acute regulatory protein,
                     mitochondrial"
                     /protein_id="XP_032474351.1"
                     /db_xref="GeneID:116746766"
                     /translation="MMKHSLQLEAFKAQDARSGRGCRTQRPTLTAQERSQKHHHQPPR
                     LPHRQGTMLLATFKLCAGSSYRHVRNMKGLRHQAVLAIGQELNRRAPRGPTPAAWINQ
                     VRGRGSLLGSQLEDALYSDQELAYIQQGEEAMQRALGILSDQEGWKKESQQANGDEVL
                     SKVIPDVGKVFRLEVVVDQPMERLYEELVEHMEAMGEWNPNVKEIKVLQKIGKDTVIT
                     HELAAEAAGNLVGPRDFVSVRCTKRRGSVCVLAGMATHYGEMPEQKGVIRAEHGPTCM
                     VLHPLAGSPSKTKLTWLLNIDLKGWLPKTIINQVLSQTQVDFANHLRQRLESRPALEA
                     RC"
     misc_feature    1288..1911
                     /gene="STAR"
                     /note="Cholesterol-binding START domain of mammalian
                     STARD1 and related proteins; Region: START_STARD1-like;
                     cd08905"
                     /db_xref="CDD:176914"
     misc_feature    order(1375..1380,1402..1404,1438..1440,1444..1446,
                     1477..1479,1489..1491,1510..1512,1519..1524,1528..1533,
                     1585..1587,1591..1602,1615..1617,1624..1626,1630..1632,
                     1636..1638,1681..1683,1732..1734,1738..1749,1753..1755,
                     1795..1797,1801..1803,1807..1809,1813..1815,1819..1821,
                     1825..1827,1846..1848,1852..1860,1864..1872,1879..1884,
                     1891..1893)
                     /gene="STAR"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176914"
ORIGIN      
        1 aaacgtacaa caagagagct gtgagtttca gttctattgg gggacttact gaggactaca
       61 gcctgggaaa ccctggcaga tagctctgag gaactgctct aaagagggag aggtacaggg
      121 gacgctggct tacgtgtgat ttaggggaag ggtacctgca ctcaggcaca cattttggta
      181 gaaggttgct cctggtcaca agctacgggt ttctccgttc atgactttag tgcttttcta
      241 agtatgagaa gatgtaagaa tccagagtcc taagaacttt ccagggcatt gtaagattgg
      301 taaccaaggg ctcacttcgc ccgtgccccc agagctcagt gcgcctcgcc ctgatcaccc
      361 ccagtcctct cagggtgtcc tgcgggtcag cgactgcagg ggcaacgact caattcttgc
      421 agaaccgggg gggggcgccg ttcctcccga ggcttcgggc ccctcatgct ggggctgggt
      481 ggcctctgcc agctctgcct gcctgtaccc tatcagaagc cctgggtgct atcccagggc
      541 agagcttctc aaagcctagt gtacagttca cagaatacct tcatggccat cacctgggaa
      601 aatttttttt aaatataggt ttcagagcct cagttctaga cttgttaaat ctggaatttc
      661 tgagcatgag ggccacgaag ctgcatttta aacagctgct gcttgagaac gactgtcaca
      721 tgtgcatact tttttctaaa ttgccttgac ctctgctgct cctttttttc tctcccctcc
      781 atccagcctg gtcaggcacc agcctcccaa gccctttccc cacccccacc cgcactcccc
      841 gcaaatggcc aaaggctcct tgtgaggcaa tcctcctatc cttggtgcct tcctttacac
      901 gatgagtgat gactttttta tctcctgatg atgaaacaca gccttcagct ggaggcattt
      961 aaggcgcagg acgcacggtc cggccgcggc tgcaggaccc agaggccaac cctgacggcc
     1021 caggagagga gccaaaagca ccaccaccag cctccacgcc tgccccaccg ccaaggaacc
     1081 atgctcctcg ccacgtttaa gctgtgcgcc gggagctcct accgacacgt gcgcaacatg
     1141 aaggggctga ggcaccaggc tgtgctggcc atcggccagg agctgaaccg gagggccccg
     1201 aggggcccga ccccagctgc ctggattaac caggttcggg gtcgcggctc tctgctcggt
     1261 tctcagctgg aagacgctct ctacagcgac caagaactgg cctatatcca gcagggagag
     1321 gaggccatgc agagggccct gggcatcctc agtgaccagg agggctggaa gaaggagagc
     1381 cagcaggcga atggggacga agtgttgagt aaagtgatcc cagacgtggg caaggtgttc
     1441 cggctggagg tggtagtgga ccagcccatg gagaggcttt acgaagagct cgtggagcac
     1501 atggaggcca tgggcgagtg gaacccgaat gtcaaggaga tcaaggtcct gcagaagatt
     1561 ggaaaagaca cagtcatcac tcacgagttg gccgcagagg cggcaggaaa ccttgtgggg
     1621 ccccgagact tcgtgagtgt gcgctgtacc aagcgccggg gctccgtgtg tgtgctggct
     1681 ggcatggcca cacactacgg ggagatgccc gagcagaagg gcgtcatcag agctgagcac
     1741 ggccccacct gcatggtgct ccatcccctg gctggaagcc cctcaaagac caaactcacc
     1801 tggctgctca acattgacct caagggatgg ctgccaaaga ctatcatcaa ccaggtcctc
     1861 tcgcagaccc aggtggattt tgccaaccac ctgcgccagc gcctggagtc ccgccccgct
     1921 ctggaagcca ggtgttgaag accagcctgc tgctgccaac ggctcccagc tgagcgcgct
     1981 tgcaggctca cgaggaggtc cctgctggaa gcctacaagt ctgttaaaga tcttcatcca
     2041 gggacagtgg gatgggatgg tggtgcgtgt ccagtatgat actagaactc agatgggtaa
     2101 cattttagta ccaagaaagt ggggacaagg ctcttttaac ttcattcact gattagctgt
     2161 aaaatgaagc acaggggtcc caaaatattt gtaaaaattt tttttctggg tccttacttg
     2221 tctacctaga aacatcttta aaatgctacc agttaacgaa cgcagggtgc agagggtgca
     2281 aaatacaagg attaggaccg cacgcttgat gagctcaaga gctccatgcc ttgcgggcaa
     2341 tgtgtgcaga aagagcaggt cttacataga gcctcctgaa accctctgct cctccaccaa
     2401 gacggtagag aactgcgcca aagaacaagc aactcccaca gcagataccg tccagaactc
     2461 tagttcaagt tatcttaatg aaaaaataca aaactaatta tcagactgac tcccctactt
     2521 cttccatgag cagtagtcag aataaagaat cgtaactaac acaaaaactt tagtctgtac
     2581 ctgttttaaa attctactct taaaatccat gctagtcaat tgcaacttca tactaaagga
     2641 gtcaaggatg aagactaatt cgttaaacta agtcccctac ctcactcaaa ggaaaaactc
     2701 caggggactt aggtcattaa ttatgtagga tctgttaccg gaatctttca taaaaattta
     2761 attt
//
LOCUS       XR_004347863            2939 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus steroidogenic acute regulatory protein
            (STAR), transcript variant X2, misc_RNA.
ACCESSION   XR_004347863
VERSION     XR_004347863.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2939
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2939
                     /gene="STAR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 19 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746766"
     misc_RNA        1..2939
                     /gene="STAR"
                     /product="steroidogenic acute regulatory protein,
                     transcript variant X2"
                     /db_xref="GeneID:116746766"
ORIGIN      
        1 aaacgtacaa caagagagct gtgagtttca gttctattgg gggacttact gaggactaca
       61 gcctgggaaa ccctggcaga tagctctgag gaactgctct aaagagggag aggtacaggg
      121 gacgctggct tacgtgtgat ttaggggaag ggtacctgca ctcaggcaca cattttggta
      181 gaaggttgct cctggtcaca agctacgggt ttctccgttc atgactttag tgcttttcta
      241 agtatgagaa gatgtaagaa tccagagtcc taagaacttt ccagggcatt gtaagattgg
      301 taaccaaggg ctcacttcgc ccgtgccccc agagctcagt gcgcctcgcc ctgatcaccc
      361 ccagtcctct cagggtgtcc tgcgggtcag cgactgcagg ggcaacgact caattcttgc
      421 agaaccgggg gggggcgccg ttcctcccga ggcttcgggc ccctcatgct ggggctgggt
      481 ggcctctgcc agctctgcct gcctgtaccc tatcagaagc cctgggtgct atcccagggc
      541 agagcttctc aaagcctagt gtacagttca cagaatacct tcatggccat cacctgggaa
      601 aatttttttt aaatataggt ttcagagcct cagttctaga cttgttaaat ctggaatttc
      661 tgagcatgag ggccacgaag ctgcatttta aacagctgct gcttgagaac gactgtcaca
      721 tgtgcatact tttttctaaa ttgccttgac ctctgctgct cctttttttc tctcccctcc
      781 atccagcctg gtcaggcacc agcctcccaa gccctttccc cacccccacc cgcactcccc
      841 gcaaatggcc aaaggctcct tgtgaggcaa tcctcctatc cttggtgcct tcctttacac
      901 gatgagtgat gactttttta tctcctgatg atgaaacaca gccttcagct ggaggcattt
      961 aaggcgcagg acgcacggtc cggccgcggc tgcaggaccc agaggccaac cctgacggcc
     1021 caggagagga gccaaaagca ccaccaccag cctccacgcc tgccccaccg ccaaggaacc
     1081 atgctcctcg ccacgtttaa gctgtgcgcc gggagctcct accgacacgt gcgcaacatg
     1141 aaggggctga ggcaccaggc tgtgctggcc atcggccagg agctgaaccg gagggccccg
     1201 aggggcccga ccccagctgc ctggattaac caggttcggg gtcgcggctc tctgctcggt
     1261 tctcagctgg aagacgctct ctacagcgac caagaactgg cctatatcca gcagggagag
     1321 gaggccatgc agagggccct gggcatcctc agtgaccagg agggctggaa gaaggagagc
     1381 cagcaggcga atggggacga agtgttgagt aaagtgatcc cagacgtggg caaggtgttc
     1441 cggctggagg tggtagtgga ccagcccatg gagaggcttt acgaagagct cgtggagcac
     1501 atggaggcca tgggcgagtg gaacccgaat gtcaaggaga tcaaggtcct gcagaagatt
     1561 ggaaaagaca cagtcatcac tcacgagttg gccgcagagg cggcaggaaa ccttgtgggg
     1621 ccccgagact tcgtgagtgt gcgctgtacc aagcgccggg gctccgtgtg tgtgctggct
     1681 ggcatggcca cacactacgg ggagatgccc gagcagaagg gcgtcatcag agctgagcac
     1741 ggccccacct gcatggtgct ccatcccctg gctggaagcc cctcaaagac caaactcacc
     1801 tggctgctca acattgacct caagggatgg ctgccaaaga ctatcatcaa ccaggtcctc
     1861 tcgcagaccc aggtggattt tgccaaccac ctgcgccagc gcctggagtc ccgccccgct
     1921 ctggaagcca ggtgttgaag accagcctgc tgctgccaac ggctcccagc tgagcgcgct
     1981 tgcaggctca cgaggaggtc cctgctggaa gcctacaagt ctgttaaaga tcttcatcca
     2041 gggacagtgg gatgggatgg tggtcaatgt tttactgttt tggaggagat ggctggaaga
     2101 aggggtgata gggtgacagc aaaatccctt tccaagattc agagaattgg tgcttaaaaa
     2161 atgtaagttg agatggggtt atttggctaa aacgtgtaag taggatgaaa acctaaccat
     2221 tatcacttga agcttttcca ttccagtgct aacagcactg atgatttaca ccatttagaa
     2281 ttagagttct agcttattta ttaaacaaat gagcagcagc aggaatgctg ttataattta
     2341 ttgaggtatt gagaagttag aactgataga gatatttatt aatatttatt ctgattgttt
     2401 cttagcagtc tattttaggc atagatgaaa ttatgtttat ccagccagga gcttcagagt
     2461 gagatgggat aattgtaaaa gtgtttctag aacagaatta tcatccactc ccagctaaga
     2521 gaaagggtta cttgttgaaa gatgtgtaga gcaacatatg ctccggtttc aagagaacag
     2581 gctgagagta aagaaatggg ctttcaacac acaccatggt tttgagtttg attataattt
     2641 gcctttttca aactatgcaa ctgtgtcttt gaggtacctg gggaggtatt ttctcacttg
     2701 tttaatttta cactggaata aaatgaattg tcagtgatga tctgcttaca gaaaccattt
     2761 catataggac tataagaaga gtgggtattc tttgagccct tcaaatgaat ctaatcaaca
     2821 cacacacaca gaatatgcag tataaacagg caaaaatcat tatttctgta acctccaatg
     2881 tatgaaagcg aaatgcacaa aaccctaatt tgaccattta aatggagagc gggtgcaca
//
LOCUS       XM_032618461            1169 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LSM1 homolog, mRNA degradation associated
            (LSM1), mRNA.
ACCESSION   XM_032618461
VERSION     XM_032618461.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1169
                     /gene="LSM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 2 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746767"
     CDS             390..791
                     /gene="LSM1"
                     /codon_start=1
                     /product="U6 snRNA-associated Sm-like protein LSm1"
                     /protein_id="XP_032474352.1"
                     /db_xref="GeneID:116746767"
                     /translation="MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLH
                     QTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVE
                     QQTKLEAEKLKVQALKDRGLSIPRADTLDEY"
     misc_feature    399..620
                     /gene="LSM1"
                     /note="Like-Sm protein 1; Region: LSm1; cd01728"
                     /db_xref="CDD:212475"
     misc_feature    order(417..419,426..431,444..446,450..458,465..467,
                     471..473,486..497,504..509,513..515,576..614)
                     /gene="LSM1"
                     /note="putative oligomer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212475"
     misc_feature    order(441..461,465..503,507..521)
                     /gene="LSM1"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212475"
     misc_feature    order(495..497,501..503,588..590)
                     /gene="LSM1"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212475"
     misc_feature    576..611
                     /gene="LSM1"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212475"
     misc_feature    <579..782
                     /gene="LSM1"
                     /note="periplasmic folding chaperone; Provisional; Region:
                     PRK10788"
                     /db_xref="CDD:182731"
ORIGIN      
        1 tggaaggacg gaggtccttg gctctggggt ctgggaagca ggaaaacgag gggcggcccc
       61 gtgttccttt aaaagggaga acacatttcc ccactgtcta tccaatctag attcctcttc
      121 ccctcttatc agggttgcgg aaagcgtatc ccaggaccgc gctacggccc cgcctcttct
      181 tgaggacggg cacgtgatgc cggaagtggg tgggggtaat atggtggcgt ttccggcagg
      241 ccccggctgc tgaaagccgg ggcgaggagt tggtacgggt ccgggttcct gtcccggtcc
      301 cgctgaggcg gcgactgcga taggaggaag gacgtgttgg tcgcgctggc ccaccgccac
      361 tatacattgc agccttatct caactcaaaa tgaactatat gcctggcacc gccagcctca
      421 tcgaggacat cgacaaaaag cacttggtcc tgcttcgaga tggaaggacg cttataggct
      481 ttttaagaag cattgatcaa tttgctaact tagtgctaca tcagactgtg gagcgtattc
      541 atgtgggcaa aaaatacggt gatattcctc gagggatttt tgtggtcaga ggagaaaatg
      601 tggtcctact aggagaaata gacttggaaa aggagagtga cacacccctc cagcaagtgt
      661 ctattgaaga aatcctagaa gaacagaggg tggagcagca gaccaagctg gaagccgaga
      721 agctgaaagt ccaggccctg aaggatcgag gcctgtctat ccctcgagca gatactcttg
      781 atgagtatta agtcttctgc tcagaggctg tagttcttgg ggagcagggg ctgtcatcaa
      841 accaagtgac acatttgacg agagactgca gagctttgaa aagtcatttt tatttgggat
      901 tctttcacat atgcaacgtg aagaaatcgt tttgttttgg tttttttaat aacaaaatca
      961 tttaaagaaa cagtggcatg gactcctttc acacatcact gtggagccag caactacttc
     1021 tttatattgc tcttctcccc ccaaattaat ggttacaggg aatattcatt tgcttgtaaa
     1081 taaaatatga atctcaaaat tgcaatgtta ttatttccca agtttgagtt gccttcagtg
     1141 aatagtcatt aaatttctgc tatcaaagg
//
LOCUS       XM_032618462             900 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus eukaryotic translation initiation factor
            4E binding protein 1 (EIF4EBP1), mRNA.
ACCESSION   XM_032618462
VERSION     XM_032618462.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..900
                     /gene="EIF4EBP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746768"
     CDS             130..486
                     /gene="EIF4EBP1"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor
                     4E-binding protein 1"
                     /protein_id="XP_032474353.1"
                     /db_xref="GeneID:116746768"
                     /translation="MSSGSSCTQTPSRAIPATRRVVLSDGVHLPPGDYSTTPGGTLFS
                     TTPGGTRIIYDRKFLMECRNSPVTKTPPRNLPTIPGVTSPVGHEPPTEASQDHLSSSP
                     EDKPAGGEESQFEMDI"
     misc_feature    154..483
                     /gene="EIF4EBP1"
                     /note="Eukaryotic translation initiation factor 4E binding
                     protein (EIF4EBP); Region: eIF_4EBP; pfam05456"
                     /db_xref="CDD:461656"
ORIGIN      
        1 aatcccaggg ggcgtcaccc cgagaggcgg aaggggcggt ctcgggcggg gcgggcccga
       61 gcgagactga acgaggccag aggggtgtga gggccccgct ccggctgctg gcggagcgct
      121 ctggagacca tgtccagcgg cagcagctgc acccagaccc caagccgggc catccccgcc
      181 actcgccggg tggtcctcag cgacggcgtg cacctgccgc ccggggacta cagcaccacc
      241 cccggcggca cgctcttcag taccaccccg ggaggtacca ggatcatcta cgaccggaag
      301 ttcctaatgg agtgtcggaa ctcacctgtg accaaaacgc ccccgcggaa cctgcccacc
      361 attcccgggg tcactagccc tgtgggtcat gagcccccta cagaagccag ccaggaccac
      421 ctgagcagca gcccagagga caagccggcg ggcggtgaag agtcacagtt tgagatggac
      481 atttaaaggg ccagccgtcg gagtgagcaa tgccgcttgg gccccagagg cccgtctcgg
      541 gagaagagtc acaccagcca ggctttgtga aagttaccat cctgggcagc tgtcggtgtg
      601 gagccttcca gccccgcccg ctgctccctc gctcagggca cctgctcccc tcccccttcg
      661 tggacaccag cagatacctc cgtgtgcctc cagccctgca ggagctgtca ccccgagggc
      721 agtgacctca ggcacaccct gcagcccagg gccagctagt ggacacgctc cggctctccc
      781 agccccctcc tccggggggg gggggcgcac ccaccccttc ctcaggttgg tgtgtgggaa
      841 agctcccctc cctctccctt cccaggaaag gaaataaaag ccttcgccct agggccaaga
//
LOCUS       XR_004347864            1304 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746769
            (LOC116746769), ncRNA.
ACCESSION   XR_004347864
VERSION     XR_004347864.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1304
                     /gene="LOC116746769"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746769"
     ncRNA           1..1304
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746769"
                     /product="uncharacterized LOC116746769"
                     /db_xref="GeneID:116746769"
ORIGIN      
        1 cttcgtaaag cctctccatg ggctggtcca ctaccacctc cagccggaac accttgccca
       61 cgtctgggat cactttactc aacacttcgt ccccattcgc ctatcggcag ggaagagagg
      121 agccccaagg gaaagccctc ctggtcactg aggatgccca gggccctctg catggcctcc
      181 tctccctgct ggatataggc cagttcttgg tcgctgtaga gagcgtcttc cagctgagaa
      241 cctggacaca aagccacgga gagactgagc ttcctagcct cctacgagct ttcacccctt
      301 tcatctctga agagcccaga ccaaagccat atggtccagc ctgcagagga ggaagctggc
      361 ctgggacaga aagtgacttg atgaggatta cctccagggc cagaaacctg cctgccttct
      421 gggctggcca ggcctggagg cagggccaca ctcaagcttg ctgaagtttc cttcttgaaa
      481 gggagagaag ctttgaacaa cctatcctgc tacagaaggg gaattacaga cacctgtccc
      541 ctgaggtctg tgtggcctct gcgtgagtaa ctgctccgtg tgcccggggg ttcccgctga
      601 tctagagaga acagccccac gccgggtaca ggtcttccaa gtgcggcttc catctaaaca
      661 gtggccacct gaacgcaatg taattagaaa ggacttgctt aggtttgtct gtggtccctt
      721 cagtgacagc gacagcagcg gactgactcc agtgaccctg gtttccgcct cctgactgat
      781 gacagcgaga ctccccacct cacccacctt ccctctctaa gtgctcctcg gctgtcttac
      841 tcccctttct tgtccttcgc cccgtctccc gcctgccctg cctcaggctt gccaacacag
      901 cttcctggag tccaggctga ctcctgcctc tgccgccacg gctcggactt ccctggcacc
      961 cttggtaccc atcctagaga caggcagagt caggaagaag ccaagacagc tcggagccct
     1021 ggaggggagg ccggggacga cagagtctgc aaggcaccca ggaaccttcg tatccagctg
     1081 cgttcttcag cgcaggggac actgagtcga cagttttgct gaccgtgaag gaacacagag
     1141 ctaacttctc tcctctgtct gaacactatg aggattcaga accttggcag cagcaagggc
     1201 cttttattcc catccacctc ctcagcgagt ccagacgaat ttgggggaca cgggtttgag
     1261 ccctggtccg ggaagatccc acatgccgca gagcaactaa gccc
//
LOCUS       XR_004347865            2793 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746770
            (LOC116746770), transcript variant X1, ncRNA.
ACCESSION   XR_004347865
VERSION     XR_004347865.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2793
                     /gene="LOC116746770"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746770"
     ncRNA           1..2793
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746770"
                     /product="uncharacterized LOC116746770, transcript variant
                     X1"
                     /db_xref="GeneID:116746770"
ORIGIN      
        1 tatggtattt atctttgtct ggcttacttc acttagtatg ataatcttta ggtccatcca
       61 tgtagctgca gatggcatta tttcattctt ttttatgcct gtgtgctctt cacgttttaa
      121 aatctcctgt ttctctctga aaagcagggc ccatatttgc ctctcatgcc tgacaaatct
      181 cagggtgatg ctcagcatgc ccagctatcc ccttacactg gttcccttgt cctcgtctgc
      241 ctgtttccag caggtgagcc agggacgttg gcaggggcca cagttaaagc tctctgtctt
      301 ctgtaatagc ctaaccagaa gagcaacctg aaggcaggtg ggccgagttg aacttcccag
      361 gtattttatt tgacctgcac actattttta gaaaattttg gattagttgc caacacaaac
      421 tgtagggaca gaaaacagat cagtggttgc caggggctgg ggaaggaggg aggagttaaa
      481 ttcacagggg caggggtgat ggtgatataa ctatatgcag ttgttaaaac tcacagaatc
      541 gtacactgaa aagagtgaat tttactgtat gcaaacttat tcgtcaataa aactgggtct
      601 tagggatgaa ttcccaggca atctgggttt ctgaccttgg atacggccag cactgggccc
      661 tctctcttcc ttgtggttct agctgctggc cggctggtgc tctgacacca ctcaatgctc
      721 tgtgtttcca gagcagcagc atttgagacc attgtctacc cctgggtcct gcagcaaccg
      781 ctgctgaatg tctgaagtta gggggaaaaa aatttttttt ttttttttaa aggagaatag
      841 gtacaaaaca ggaggttgag aagaggcaaa gcagtgaagt gagacatgag aaaaaaagag
      901 gacttgattt tattttctgc tcccaaggag ccctggcaga gctggaggag tagacagcta
      961 ggggagtgtg aaccagggtg gacagcccca aagctttggg acagacgtcg gcgcaccaat
     1021 catctccaga ctcttcatgc ctggggggct gtggtctcca gcgagggcag taagagaaca
     1081 tctccacatt cagtgtaagg atctctgcta tcactccact ccgggatgct cgttatctgg
     1141 gacaagtatg tcctaagcag agagaacagg aaattccggc ctcgtccaga gcctgctgca
     1201 tctgctctgc ctgctggcct gcaccgtctg ccgtctgtac ctcgctctgc ctaacctgcc
     1261 acccatactc ctgtgagcaa aactgaggcc actctccagc catcacatct ggggttcatg
     1321 ctgatgtggc atccctgaga agccctgcac aatggcagcg tgagggcatc tggttctgct
     1381 aagtatccag ggcctgttgg gagtttatcc gagcagggtg ggagagcaga tactgtggct
     1441 taaattcagc cgacaacatg cgacgtaagg tcaagggcca aggaaaggga aaaagaacag
     1501 ctgggagagg gagagagagg ctgctgtacc cagttacatc agaataaaga tcgccaggaa
     1561 aggggctgca gtagaccttc cttgtttgtt tgttttcctt gaaagtggtc tcatggaaac
     1621 ctctatcgga agaaacgatt aaagacaaaa caaaggtata gaactgagat tggttctgaa
     1681 gcctgactaa cagtagagga gtacctgcag cggtccagga aaaaagcacg atttcagtac
     1741 ctgcaaaaag cctggactgg ccaaagctga gggcaggccg ttgctctgag cagcagggag
     1801 actaacagga gggaagcagg agtctcattc cacccttcag ctctctttgc tgctgcctgt
     1861 gtgacaaagg tctaaaggca agatgttatt acgcataact gaagcccagc tatggcttgg
     1921 aaattcccga actaccgtgg aaattctctc ctttgaacca tgactctttt gattgcattt
     1981 ggaattctgt ttgaaggagg ttgcaaagac gagtacagtg aatccgaatc tcttgaaggt
     2041 gccggatatt ctgaaacagt ggtgctcaga aaaaagcaga atgcttacag aatgctgtaa
     2101 ttctgctgac tctccaagaa catcttcttg tagtgaaagt tagccacctc ttccgcaagt
     2161 cttccctttg tgtgggaagt taataacaaa ttctggctat tcaacagtaa ggttggagat
     2221 gaaacacact agataaatca tgaagtgcga tggttcttca caaattagct accttgaaac
     2281 caacccaatg atgaatagct cagaagtctg catttggcgc agttttaaaa acacctgagc
     2341 tcataacatg tggtatattt aatactataa aataactcaa acataggaat tggctataaa
     2401 tatcttccct gcaaagaata tctttgctca acagactata aaataagtat ctggaatagt
     2461 tttacagtta aaactgagaa tcagggagga taagtgactt gcttgagccc aaggtgctag
     2521 agagaacaga gtccacgttt cggaaagtac agcctcttac gcttcctgtg tgatcaacat
     2581 cattccagaa aaggggcatc acttggcttg gctgagaata acctagatat atcagtcact
     2641 gcaacacgat tttatctgtg ctttttgatc acagcatagg aggctcaaga ctcaatccaa
     2701 aggactagaa aacctaacga aattaacaat atttagagaa gtctcttatg tggatctcgg
     2761 aaacgcagct gggatagctg ttggtgaagc aaa
//
LOCUS       XR_004347866            2797 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746770
            (LOC116746770), transcript variant X2, ncRNA.
ACCESSION   XR_004347866
VERSION     XR_004347866.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2797
                     /gene="LOC116746770"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746770"
     ncRNA           1..2797
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746770"
                     /product="uncharacterized LOC116746770, transcript variant
                     X2"
                     /db_xref="GeneID:116746770"
ORIGIN      
        1 tatggtattt atctttgtct ggcttacttc acttagtatg ataatcttta ggtccatcca
       61 tgtagctgca gatggcatta tttcattctt ttttatgcct gtgtgctctt cacgttttaa
      121 aatctcctgt ttctctctga aaagcagggc ccatatttgc ctctcatgcc tgacaaatct
      181 cagggtgatg ctcagcatgc ccagctatcc ccttacactg gttcccttgt cctcgtctgc
      241 ctgtttccag caggtgagcc agggacgttg gcaggggcca cagttaaagc tctctgtctt
      301 ctgtaatagc ctaaccagaa gagcaacctg aaggcaggtg ggccgagttg aacttcccag
      361 gtattttatt tgacctgcac actattttta gaaaattttg gattagttgc caacacaaac
      421 tgtagggaca gaaaacagat cagtggttgc caggggctgg ggaaggaggg aggagttaaa
      481 ttcacagggg caggggtgat ggtgatataa ctatatgcag ttgttaaaac tcacagaatc
      541 gtacactgaa aagagtgaat tttactgtat gcaaacttat tcgtcaataa aactgggtct
      601 tagggatgaa ttcccaggca atctgggttt ctgaccttgg atacggccag cactgggccc
      661 tctctcttcc ttgtggttct agctgctggc cggctggtgc tctgacacca ctcaatgctc
      721 tgtgtttcca gagcagcagc atttgagacc attgtctacc cctgggtcct gcagcaaccg
      781 ctgctgaatg tctgaagtta gggggaaaaa aatttttttt ttttttttaa aggagaatag
      841 gtacaaaaca ggaggttgag aagaggcaaa gcagtgaagt gagacatgag aaaaaaagag
      901 gacttgattt tattttctgc tcccaaggag ccctggcaga gctggaggag tagacagcta
      961 ggggagtgtg aaccagggtg gacagcccca aagctttggg acaggtagac gtcggcgcac
     1021 caatcatctc cagactcttc atgcctgggg ggctgtggtc tccagcgagg gcagtaagag
     1081 aacatctcca cattcagtgt aaggatctct gctatcactc cactccggga tgctcgttat
     1141 ctgggacaag tatgtcctaa gcagagagaa caggaaattc cggcctcgtc cagagcctgc
     1201 tgcatctgct ctgcctgctg gcctgcaccg tctgccgtct gtacctcgct ctgcctaacc
     1261 tgccacccat actcctgtga gcaaaactga ggccactctc cagccatcac atctggggtt
     1321 catgctgatg tggcatccct gagaagccct gcacaatggc agcgtgaggg catctggttc
     1381 tgctaagtat ccagggcctg ttgggagttt atccgagcag ggtgggagag cagatactgt
     1441 ggcttaaatt cagccgacaa catgcgacgt aaggtcaagg gccaaggaaa gggaaaaaga
     1501 acagctggga gagggagaga gaggctgctg tacccagtta catcagaata aagatcgcca
     1561 ggaaaggggc tgcagtagac cttccttgtt tgtttgtttt ccttgaaagt ggtctcatgg
     1621 aaacctctat cggaagaaac gattaaagac aaaacaaagg tatagaactg agattggttc
     1681 tgaagcctga ctaacagtag aggagtacct gcagcggtcc aggaaaaaag cacgatttca
     1741 gtacctgcaa aaagcctgga ctggccaaag ctgagggcag gccgttgctc tgagcagcag
     1801 ggagactaac aggagggaag caggagtctc attccaccct tcagctctct ttgctgctgc
     1861 ctgtgtgaca aaggtctaaa ggcaagatgt tattacgcat aactgaagcc cagctatggc
     1921 ttggaaattc ccgaactacc gtggaaattc tctcctttga accatgactc ttttgattgc
     1981 atttggaatt ctgtttgaag gaggttgcaa agacgagtac agtgaatccg aatctcttga
     2041 aggtgccgga tattctgaaa cagtggtgct cagaaaaaag cagaatgctt acagaatgct
     2101 gtaattctgc tgactctcca agaacatctt cttgtagtga aagttagcca cctcttccgc
     2161 aagtcttccc tttgtgtggg aagttaataa caaattctgg ctattcaaca gtaaggttgg
     2221 agatgaaaca cactagataa atcatgaagt gcgatggttc ttcacaaatt agctaccttg
     2281 aaaccaaccc aatgatgaat agctcagaag tctgcatttg gcgcagtttt aaaaacacct
     2341 gagctcataa catgtggtat atttaatact ataaaataac tcaaacatag gaattggcta
     2401 taaatatctt ccctgcaaag aatatctttg ctcaacagac tataaaataa gtatctggaa
     2461 tagttttaca gttaaaactg agaatcaggg aggataagtg acttgcttga gcccaaggtg
     2521 ctagagagaa cagagtccac gtttcggaaa gtacagcctc ttacgcttcc tgtgtgatca
     2581 acatcattcc agaaaagggg catcacttgg cttggctgag aataacctag atatatcagt
     2641 cactgcaaca cgattttatc tgtgcttttt gatcacagca taggaggctc aagactcaat
     2701 ccaaaggact agaaaaccta acgaaattaa caatatttag agaagtctct tatgtggatc
     2761 tcggaaacgc agctgggata gctgttggtg aagcaaa
//
LOCUS       XR_004347867             637 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746771
            (LOC116746771), ncRNA.
ACCESSION   XR_004347867
VERSION     XR_004347867.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..637
                     /gene="LOC116746771"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746771"
     ncRNA           1..637
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746771"
                     /product="uncharacterized LOC116746771"
                     /db_xref="GeneID:116746771"
ORIGIN      
        1 acgtgaaggc ggaggagatg agattactcg ttggatttcc tctaggactc acttcatttc
       61 agggtggacg ctgcgcattt tcgtgaccgg gacgaaatca ccgcgcggat gaggcgcctt
      121 gagagcgctg gcagcctaga ggctttgaag gctgtgatgt gcattgcaga ctttcctcac
      181 cgttagacgt gggaaacgtc ttcccgccca gaagtagttt gttgtactgc cctcgtgatc
      241 tgccactttg agcaggtttc ctagtggcgt ctggagatgg gcggcttaat tttgtgactt
      301 taaaattaat tgaaaattta aatcaaaaaa gtaattgggg aattccgtgg ttaggattcg
      361 gcgctttcac cgtggaggcc caggtttaat ccctggtcag ggaactgaga taccgcaagc
      421 cgcacaacac ggccaaaaca aaataacaac aaaaaaagta attgttccag caaggaacca
      481 gaacctgtgc catcaacatc cggcatgagt gaaattgcag cttgccctct gtttcctatt
      541 gctgatgacc ctgcagctct accatctctc acctccactc cctcctccag tcagtaactc
      601 ttcttttttt tttaaataaa tttatttatt ttatgta
//
LOCUS       XM_032618463            2691 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus claudin 23 (CLDN23), mRNA.
ACCESSION   XM_032618463
VERSION     XM_032618463.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2691
                     /gene="CLDN23"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746772"
     CDS             943..1824
                     /gene="CLDN23"
                     /codon_start=1
                     /product="claudin-23"
                     /protein_id="XP_032474354.1"
                     /db_xref="GeneID:116746772"
                     /translation="MRTPVVMILGMVLAPCGLLLTLTGTLTPGWRLVKGFLDQPVDVV
                     LYQGLWDMCREQSSSERQCGQPDDLGYFAAEPVRVARGLMITSLAATALGLLLATVGV
                     RCWQDEPHFALAGLSGVVLFAAGLLSLIPVSWYNHFLADRAVLPAQSSPVTVQVGYSL
                     VLGYLGGCLLLLGGFSLALSFAPWCAERCRSCRKAPPARARRSSISTVYIDWPEPALT
                     PAIKYYSDGQHRPRPVQLGAASQRKAGFPMPRPPPKAYSNPVEVLDGEKAPESHHGES
                     SRSTRSCGSALPCDSDL"
ORIGIN      
        1 acacccccct ttattttttc gtcagtttca aaatcaagag gccaaacaaa gaaaataaaa
       61 tcctcggtaa ttcctcatcc cagaaacaca ggcgctttga ttcttttcca tcaaggttaa
      121 tccggagtat ggcgtcttta ttaagcaaat taaacaaaat acacaagtgc aacactctgg
      181 gacacgcttc tcgaccggga ggaccctcgg tgcacacctg cccagcgcat ctcgggcggt
      241 tccgcccact cagccgtggg tgtctgcaag ctaatagcgc aaaatttcga ggggccatcg
      301 gatccccgct ggggttggag ggaggacagg ctacaggtgc agggtcgacg ggcagggacc
      361 ggagaaaaac tttagttacc gagatctgct gagaagcagg gacctgcgca gtgcccgggc
      421 caggtgcggc cgttcggcgg cgcctctttc cttcccctcc ccaggccgac ctggccccgc
      481 cgagcggcgc agaggtgcag gggcggggcg acctttgctc ggtccgagtc ccgctgggcc
      541 gcgcagcttc ctgctcgcca ctccagcccc tcccacccgg acgggtttgg ccgcggctgc
      601 cgccacctct gcgcgccggc atctcgggcc caggtttcga tcagacttgc ccgcgagctg
      661 gtttcgatta ggcggctggg cgggaggtag ggcggagcgg ccgggactcg gggagcgaac
      721 tagggacggg tagcggagcg cagacggccc cgcgccggag acaaagagcg gccggaggag
      781 agctgggcgc aggactccgg gcgtggcggc gacgagcgtg cggacttcag ggagccggag
      841 cctggagcgc tgtccggggg cgcaagggct cgagatagca agccggcggc ggaggcggag
      901 gcggaggcgg gggcggagga gagggcaggt gcgccgtcca ggatgaggac gccagtggtg
      961 atgattctgg gcatggtgct cgcaccctgc gggctgctac tcaccctgac cggcacgctg
     1021 acgcccggct ggagactggt gaagggcttc cttgaccagc cggtggacgt ggtgctgtac
     1081 cagggcctgt gggacatgtg ccgcgagcag agcagcagcg agcgccagtg cggtcagcca
     1141 gacgacttgg gctacttcgc cgccgagccc gtgcgggtgg cgcggggact catgatcacg
     1201 tcgctggccg ccacggccct ggggctactg ctggcgacgg tcggcgtgcg ctgctggcag
     1261 gacgagcccc acttcgcgct ggccggcctc tccggcgtcg tgcttttcgc cgcgggcctc
     1321 ttgagcctca tcccagtctc ctggtacaac cacttcttgg cggatcgcgc cgtcctgccc
     1381 gcccagtcca gcccggtcac cgtgcaggtc ggctacagcc tggtgctggg ctacctgggc
     1441 ggctgcctgc tgctgctggg cggcttctcg ctggcgctca gctttgcgcc ttggtgcgcc
     1501 gagcgctgtc gcagctgccg gaaggcgccc ccagccaggg cgcgccgcag cagcatcagc
     1561 accgtgtaca tcgactggcc ggagcccgcg ctcacgccgg ccatcaagta ctacagcgac
     1621 ggccagcacc ggccgcggcc cgtccagctc ggcgccgcca gccagcgcaa ggccggcttc
     1681 ccgatgcccc ggccgccgcc caaggcctac agcaacccgg tggaagtgct cgatggggag
     1741 aaggctcccg aatcccacca cggcgagtcc tcccgcagca cccggtcatg cggcagcgcg
     1801 ctgccctgcg actccgacct gtaggcggcg cccccagcct gctctggccg ggccctgtct
     1861 gggtgaagga ctcgccccac cacggtccaa ccttgaactt ggctgttacc tttcagctgg
     1921 aaacacctgc ctcggagtcg gacccccgga cacattcctg taactggttt ggagggcgat
     1981 cttcctttcc tagccaaact cgactccttg gaccattagt tcaggttggg tttggttttc
     2041 tttttacaga gtttactgtt tctcccccga gggatcaggg ccctcttctg gacgacagcc
     2101 ttttcatact tttagctgga gacataggaa gggtgacttt gcatcctgct gataataaca
     2161 atgtcagaat cagcaaatgg aggctcaaaa ccgatttaac atctccaaac aacattctga
     2221 aatgctgatg aaccttgcat caatataatt attaatttat tttctgctgc ataattcatt
     2281 ttcacacaaa ctgtcaagag accggtacct ttctggttat atttgaatgg ggctgttaaa
     2341 ataaacacag agccatgcaa ataccagcag ctttagtggc ttttatggaa tgaaataacc
     2401 tgattaactc atatttacat ttcttcatgt ataaatagga tctatcattt ttatcactta
     2461 tttttggtgt gaaagttgag gtcactccag agtttctctt ctagaagcca gaaggagaat
     2521 gaagggactg atgctgtatt gttctatttc ttggctacct caccctggac attaaagact
     2581 atatattaaa tatttagaac aaaatggaac ctgttaatca cattaggcta ccgtacatgt
     2641 atatatatct cttatttata aataaaattt gaaagcaaga gtttcactca a
//
LOCUS       XR_004347868            2267 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746773
            (LOC116746773), ncRNA.
ACCESSION   XR_004347868
VERSION     XR_004347868.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2267
                     /gene="LOC116746773"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746773"
     ncRNA           1..2267
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746773"
                     /product="uncharacterized LOC116746773"
                     /db_xref="GeneID:116746773"
ORIGIN      
        1 tggatgttgg acgcaaacaa cgtccgtctg acgctcggcg ttcactcgct acacgctcat
       61 tgcaccaggt cagcgttcct cttactgggg ggaagcaatg aggaatgggg aagtgaggct
      121 gatgcaagga aatagcaatg agagggaaat ggaaaccgta tttcctcctg gcacagctct
      181 gtggctgttg acctttaagg gacaagtagg tggaatccct gattctaggg ataccagtga
      241 atcggggcag gagacggtct tgccgtgaga ccggggaaag gggtctgcct gggtttaatg
      301 agaatggaaa gggttgttgg gtctagggac acctggcttc tccccacagg catggccctg
      361 ggaatcacac ctcaacggct ggacatcttc tctctcctgc tctcaatctt gaggtttcct
      421 gggaaagcct gtctcattta ttataaacta atttcctggg agaaggtggg agagagtgga
      481 tggtgaagag atataggaaa cgggagctag gcttctggct tgggcgccac tagttggtgt
      541 agaggacgtg gtctccgagt ttccttccag ctctgtgcct cgtgcgtcct aagtgcccga
      601 aggtgctgaa ctgatctcca gtctctccat ggcaaagtga gggctctgtt tcctgaggaa
      661 cctgagcaat cccgcccaga tgttctcaac gccacccacc gtgggaacgc acaccatgcc
      721 tcacgggaca gagcctactg ggatgtcctg ggtgttgtga aggggcctgg cgggcactga
      781 gggacactca ccccatctca tggactcagg gaaatcaccc gaggctgacc ccatgctaac
      841 tactgaggtt cacagtccta ggaacagcaa aggaggaaaa cagacatcta cacagagcct
      901 cagtggcccc atccacataa taaggatcag cgctgtgacc tcgaggctca cacctctgaa
      961 gaagcggcca ggattttctg gcaccaaaga ccgccctggg ctgtttcctc aagataccca
     1021 gctgatcctc agaggtgtga actcccttca ctaaggtttg ataaggggcc ctggggagga
     1081 tggggaagcc tcagtcaaca ctgtcgaagg agtaaggttt gtatttgtgt ccttctaaca
     1141 atctcttccc cacacttcac gccagccagc gaccagtgtc tttcccaggc tttctgcccc
     1201 tcctctcagc ccagaactac tgtcagctaa tccctggaag ctgcaaaggc taacggtggg
     1261 atcttttcag gaggacaaag aacaaaaagc cccagatctc aaatgaactt ctccttgagg
     1321 aatttcagtc tccaagacag gcgatgtcta cacacccctg aaatcacgct ctcagcccct
     1381 ctccttctcc aaaagccaac agaggagcca cctagagagc cgcatataca gcgctgcact
     1441 tccgcacttg agcaaccctg gttctctgct gaagtctgag acttttagct cagcttttcc
     1501 cccacagagg ctgttcactg cacggaacta ggttcttcag ttttacttgc tcaaggcaac
     1561 tgggctgtgt ctgccttcac aacccatcag ttcactgcag ccattagaaa ccaggctggg
     1621 tgagtagtga gataccagag gcacgccttc cagatcagga acaaaacaag tgtcctgggt
     1681 accactacgt catttaacat tgttccaaaa gtgttagtca atacaattag acaaaagcat
     1741 gaagaaatat aaatatttta aaagaggggg aaattgtcgt tattatttat ttatttattt
     1801 atagataatc tgatcacaca gttgaaaagc tgaataaaat gaaatcattg gaaatattga
     1861 gttcaataag gaggtcagat tttttttcag aaaagcaaaa tcaatgtcct tagagtcagt
     1921 tagaaatacg atgtaatgac cccattcaca aaagcagcca cgctataaaa taagataaaa
     1981 tgaaataaat acctagaata aacttttaaa atatatacat gatagatgaa gagagcaatg
     2041 aaacccaacc aagagtcata aaagatggcc tgaataaatg gtgagatatc ttgttctcag
     2101 atgagcaact taatttcttt gatttctaaa tattggagga ttttccaaat attgttctga
     2161 tattgatttt ctattttaat tgcattgtag tcagttctgt taaacttatt aaggtttaat
     2221 ttacagccca gaaaggggtc tatgtgaatg ttccatgtgc gttggaa
//
LOCUS       XM_032618465             634 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus defensin beta 1 (DEFB1), transcript
            variant X1, mRNA.
ACCESSION   XM_032618465
VERSION     XM_032618465.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..634
                     /gene="DEFB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746774"
     CDS             214..540
                     /gene="DEFB1"
                     /codon_start=1
                     /product="beta-defensin 1 isoform X1"
                     /protein_id="XP_032474356.1"
                     /db_xref="GeneID:116746774"
                     /translation="MSAMGGNPLTRGQPFPWHTANQPPCPDWGKSPADWPRPTFRDDL
                     SHVASHGQVPVCITTGVNLLTGFGQRSDHYICVKKGGTCNFSSCPLFQRIEGTCYGRK
                     AKCCIR"
     misc_feature    427..531
                     /gene="DEFB1"
                     /note="Beta defensin; Region: Defensin_beta; pfam00711"
                     /db_xref="CDD:459914"
ORIGIN      
        1 caagaagcct ctgccctccc cggggatccg ggccacctgc caccaccatg agggtcctct
       61 acctgctgct gctgactctc ggcctcctct tttcgcagct ggccacagat atcttgaaaa
      121 gatccacaga ggtgaagtcc gaccctctct ggcctccact gaccgcctga gccaccagca
      181 cgtctcctaa gtggacaagc gacctctatt gtaatgtccg caatgggagg gaacccactc
      241 actcgtgggc agcccttccc ctggcacact gccaaccagc caccttgtcc tgactgggga
      301 aagagcccag ctgactggcc caggcccaca ttccgagacg acctgtctca cgtcgcttcc
      361 cacggacaag tccctgtatg catcaccaca ggtgttaacc tgcttacggg tttcggccag
      421 aggtccgacc actacatatg tgtcaagaaa ggggggacct gcaacttctc ctcctgcccg
      481 ctcttccaaa ggattgaagg cacctgctac ggcagaaaag ccaagtgctg catccgttga
      541 ctttgggctg gagcatgggc agaggggacc cagaagccaa gtgaagtact tgtaactgtt
      601 gtttgaataa aagaaggttt tttcgaggca tacg
//
LOCUS       XM_032618466             371 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus defensin beta 1 (DEFB1), transcript
            variant X2, mRNA.
ACCESSION   XM_032618466
VERSION     XM_032618466.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..371
                     /gene="DEFB1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746774"
     CDS             68..277
                     /gene="DEFB1"
                     /codon_start=1
                     /product="beta-defensin 1 isoform X2"
                     /protein_id="XP_032474357.1"
                     /db_xref="GeneID:116746774"
                     /translation="MRVLYLLLLTLGLLFSQLATGVNLLTGFGQRSDHYICVKKGGTC
                     NFSSCPLFQRIEGTCYGRKAKCCIR"
     misc_feature    164..268
                     /gene="DEFB1"
                     /note="Beta defensin; Region: Defensin_beta; pfam00711"
                     /db_xref="CDD:459914"
ORIGIN      
        1 gcctctgaga gttcagcctc caagaagcct ctgccctccc cggggatccg ggccacctgc
       61 caccaccatg agggtcctct acctgctgct gctgactctc ggcctcctct tttcgcagct
      121 ggccacaggt gttaacctgc ttacgggttt cggccagagg tccgaccact acatatgtgt
      181 caagaaaggg gggacctgca acttctcctc ctgcccgctc ttccaaagga ttgaaggcac
      241 ctgctacggc agaaaagcca agtgctgcat ccgttgactt tgggctggag catgggcaga
      301 ggggacccag aagccaagtg aagtacttgt aactgttgtt tgaataaaag aaggtttttt
      361 cgaggcatac g
//
LOCUS       XM_032618467            2362 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger matrin-type 4 (ZMAT4), mRNA.
ACCESSION   XM_032618467
VERSION     XM_032618467.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2362
                     /gene="ZMAT4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 Proteins, and 57%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746775"
     CDS             125..817
                     /gene="ZMAT4"
                     /codon_start=1
                     /product="zinc finger matrin-type protein 4"
                     /protein_id="XP_032474358.1"
                     /db_xref="GeneID:116746775"
                     /translation="MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRL
                     YYMLHPRDGGCPAKRLRSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKR
                     LKLLLGEKTPLTTTAAPLSSLKPPRVDTAPVVSSPYQRRDSDRYCGLCAAWFNNPLMA
                     QQHYDGKKHKKNAARVALLEQLGTTLDTGELRGLRRNYRCTICSVSLNSIEQYHAHLK
                     GSKHQTNLKNKQ"
     misc_feature    167..238
                     /gene="ZMAT4"
                     /note="Zinc-finger of C2H2 type; Region: zf-met;
                     pfam12874"
                     /db_xref="CDD:463736"
     misc_feature    170..238
                     /gene="ZMAT4"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275371"
     misc_feature    order(191..199,203..208,218..220,233..235,368..370,
                     377..391,395..400)
                     /gene="ZMAT4"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275371"
     misc_feature    338..442
                     /gene="ZMAT4"
                     /note="U1-like zinc finger; Region: ZnF_U1; smart00451"
                     /db_xref="CDD:197732"
     misc_feature    353..421
                     /gene="ZMAT4"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275371"
     misc_feature    548..652
                     /gene="ZMAT4"
                     /note="U1-like zinc finger; Region: ZnF_U1; smart00451"
                     /db_xref="CDD:197732"
     misc_feature    563..631
                     /gene="ZMAT4"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275371"
     misc_feature    order(584..592,596..601,611..613,626..628,737..739,
                     746..760,764..769)
                     /gene="ZMAT4"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275371"
     misc_feature    <716..>814
                     /gene="ZMAT4"
                     /note="TUTase nucleotidyltransferase domain; Region:
                     TUTase; pfam19088"
                     /db_xref="CDD:465974"
     misc_feature    722..790
                     /gene="ZMAT4"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275371"
ORIGIN      
        1 aggtctggtc gcagagacag ggacgggcaa tcctcagcgt gctccatccc gacagcagcc
       61 ctccacggct cggcagggca gcgagcctct gggcaccggc ccctctgctc cacggaaaag
      121 cctgatgaag tcctccgata tcgatcagga tttatttaca gacagttact gcaaggtgtg
      181 cagcgcacag ctgatatcgg aatctcagcg cgtggcccac tacgagagtc gaaaacatgc
      241 cagtaaagtc cgactatatt acatgcttca ccccagggac ggtgggtgcc ccgcaaagag
      301 gctccgatca gagaatggaa gcgatgccga catggtggat aaaaacaagt gttgcaccct
      361 ctgtaacatg tccttcacct ccgcggtggt ggctgactca cattatcaag gcaaaatcca
      421 tgccaaaagg ttaaaactgt tgctaggaga gaaaacccca ttaacgacca cagcagcgcc
      481 tctgagctca cttaaacctc cgagagtgga cactgctcca gtggtctcat ctccctatca
      541 aagaagagat tcagacagat actgtgggct ctgtgcagcc tggtttaaca accctctgat
      601 ggcccagcag cattatgatg gcaagaaaca caagaagaat gcagcaagag ttgctttgtt
      661 agaacagctt gggacaactc tggatacggg ggaattaaga ggtctgaggc gcaattacag
      721 atgtaccatc tgcagtgtct ctctaaactc aatagaacag tatcatgccc atctgaaagg
      781 atctaaacat cagaccaacc tgaagaataa gcagtgaaaa catcaatcaa gagatgagaa
      841 aaaataagtt aggatttctg tgccgtggag aatcgcttac caaccaccag aagaagattc
      901 tttctggaac aatgaacatt tcttatgagg attcacagat taacatatga ctaatttaag
      961 ttttggagag tgaatgagct ttctttcttt ttttttttta attttgtggt aagttatgat
     1021 atttggatgg tttttaaaaa ctctttcctg ataatatatt tagcacatgt tctcaattat
     1081 aatcctatag caaacagcat cgttcaaact tgaaggcagt ggaaaatctc aatttccaat
     1141 ttattctcag atttcttcaa catataatta ttctgttaaa tccttgctga tcgagatgta
     1201 aaccacttca atcatgaaat aaactatttt ttcatcttgt tgacgtgact ggtggcaacg
     1261 tgcacagaac cagacaaatc actattagta gaaaatatgt aatggacaca aattctcact
     1321 tcaccttcaa aaatgtgagc catctttgcc atctgaacca ggatgaagag ggtaatcaag
     1381 gaggaatcct cgtctttttt tcctgatcat tcaaataaca gtttctcaag gttaagccaa
     1441 gtcctctttt gcaagctgcc aaaataataa cttaggaaaa ggattcgttt tcctgcatga
     1501 agatcctctt aggcaaaaat gtcttaatag cagttgacct tgatgaaacg ttttcccaaa
     1561 ggcattcaaa agaagaatga tcaaccccat acgagaggga aataaatgag ggcttcttat
     1621 gaagttggcc tgaattgtgg gctttcgtgt agggcactgg tgatttggaa agaagtgagt
     1681 gaattctgaa caaatgaccg ccttgggtat tgaggtcacc tgttcctctg tttctcactg
     1741 aagtcctttt tgctgaactg agattcaacc acttctttag ggagaacgcc actgacagac
     1801 tggaaaacca ttactctctg atggggacta tctcggaggt ttaaatttct aggttgaaat
     1861 cttctccatg gcgagtggat ttggagtcct acaggctggc tgcagagctg ggcatttaaa
     1921 tgcttcttag ggcctggctg gggttgccct ttgtgcattg tgactgatct cctggtgtca
     1981 ggattttctg tatgtctgtg acttttccac agagagctga ggtggttaaa gctcagtgag
     2041 caataaatga aatgacttag acatcacagt gttgttacgg aggtgtttgc aatttggcac
     2101 cgttctcttg agaaaggtcc actcaggaga gaccagactt gtcagtttcc gtgtctgcag
     2161 agaggagagg ccacgccagc cacgccagtc atgggccatc ccttgggaag gaaggaggct
     2221 ttgaaaggaa gcagtctatt tttctgtttt ggaaagcaca caaaagaggt gcaaacctcc
     2281 aatgatgact tttcttcaag tgtgtaaaat aaggctttct ttgtcaattc tgctgtaaaa
     2341 taagcattgt ccaagtaaaa aa
//
LOCUS       XM_032618468            1377 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cholinergic receptor nicotinic beta 3
            subunit (CHRNB3), mRNA.
ACCESSION   XM_032618468
VERSION     XM_032618468.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1377
                     /gene="CHRNB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 30 Proteins"
                     /db_xref="GeneID:116746776"
     CDS             1..1377
                     /gene="CHRNB3"
                     /codon_start=1
                     /product="neuronal acetylcholine receptor subunit beta-3"
                     /protein_id="XP_032474359.1"
                     /db_xref="GeneID:116746776"
                     /translation="MLADFILLLSALRVTGSAAAGFRSIAEEEDALLRHLFQGYQKWV
                     RPVLQSNDTIKVYFGLKISQLVDVDEKNQLMTTNVWLKQEWTDHKLRWNPDEYGGIHS
                     IKVPSESLWLPDIVLFENADGRFEGSLMTKAIVKSDGTVVWMPPASYKSSCTMDVTFF
                     PFDRQNCSMKFGSWTYDGTMVDLVLIDENVDRKDFFDNGEWEILNAKGTAGSRRDGAY
                     RYPFITYSFVLRRLPLFYTLFLIIPCLGLSFLTVLVFYLPSDEGEKLSLSTSVLVSLT
                     VFLLVIEEIIPSSSKVIPLIGEYLLFIMVFVTLSIIVTVFVINVHHRSPSTYHPMAPW
                     VKRLFLQKLPKLLCMKDHVDGYSFPDKEESKPAVGGKVLEERKQKQISDGEKALVTFL
                     EKAADSIRYISSHVKKEHFISQVVQDWKFAAQVLDRIFLWLFLIASVTGSVLIFTPAL
                     KMWLHSYH"
     misc_feature    13..1347
                     /gene="CHRNB3"
                     /note="Cation transporter family protein; Region: LIC;
                     cl42365"
                     /db_xref="CDD:455710"
ORIGIN      
        1 atgctggcag actttatctt gctgctcagc gccctccgtg tcaccggctc agctgctgca
       61 ggattcaggt ccatagccga agaagaagat gcactgctca gacatttatt ccaaggttac
      121 cagaaatggg ttcgccctgt attacaatct aatgacacca taaaagtata ttttgggttg
      181 aaaatatctc agctggtaga tgtggatgaa aagaatcagc tgatgacaac aaacgtgtgg
      241 ctcaaacagg aatggacaga ccacaaatta cgctggaatc cagatgaata cggtggaatt
      301 cattcaatta aagttccgtc agaatctctc tggcttcctg acatagttct ctttgaaaac
      361 gctgacggac ggttcgaagg ctcgctcatg accaaggcca tcgtgaaatc cgacgggacc
      421 gtggtgtgga tgcctcccgc cagttacaaa agctcctgca ctatggacgt caccttcttc
      481 ccattcgaca ggcagaactg ctccatgaag ttcggatcct ggacttacga cgggaccatg
      541 gttgaccttg tcctgataga cgagaacgtg gacagaaaag acttcttcga caacggagag
      601 tgggagatcc tcaacgccaa gggcacggcg gggagccgga gagacggtgc gtaccggtac
      661 ccattcatca cctactcctt cgtgctgcgc cgcctgcccc tgttctacac cctcttcctc
      721 atcatcccct gcctggggct gtcctttctg acagtgcttg tcttctactt gccttctgac
      781 gagggggaga agctctcctt atccacgtcc gtcttggttt ccctgacagt gtttctcctg
      841 gtgattgaag aaatcatccc gtcctcctcc aaggtcatcc cgctcattgg cgagtacctc
      901 ctgttcatca tggtctttgt caccctgtcc atcatcgtca ccgtgtttgt catcaacgtc
      961 caccacagat ctccctccac ttaccacccc atggccccct gggttaagcg gctatttctg
     1021 caaaaacttc ctaaattact ttgcatgaag gaccacgtgg atggctactc tttcccggat
     1081 aaagaggaga gtaaaccggc agtgggaggt aaagtcctcg aagaaaggaa acaaaagcag
     1141 attagcgatg gagaaaaagc tctggtcact ttcctggaaa aggctgcgga ttccatcaga
     1201 tacatttcca gccacgtgaa gaaagagcat ttcatcagtc aggtggtgca agactggaag
     1261 ttcgcagctc aagttctcga ccggatcttc ctctggctct ttctgatcgc gtctgtcacc
     1321 ggctcagtgc tgattttcac ccctgctttg aagatgtggc tacacagtta ccattag
//
LOCUS       XM_032618469           15809 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAT atypical cadherin 1 (FAT1),
            transcript variant X1, mRNA.
ACCESSION   XM_032618469
VERSION     XM_032618469.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15809
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15809
                     /gene="FAT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 23 long SRA reads, 3
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746777"
     CDS             1184..15007
                     /gene="FAT1"
                     /codon_start=1
                     /product="protocadherin Fat 1 isoform X1"
                     /protein_id="XP_032474360.1"
                     /db_xref="GeneID:116746777"
                     /translation="MGRHLASLLLLLLLQHFGDSDGSQALEQTPVQFTHFQYNVTVHE
                     NSAAKTYVGHPVKMGIYITNPLWELRYKIVSGDNENLFKAEEYILGDFCFLRIRTKGG
                     NTAILNREVKDHYTLIVKAVEKNTNMEARTKVRVQVLDTNDLRPLFSPTSYSVSLPEN
                     TALRTSIARVSATDADIGTNGEFYYSFKDRTDMFAIHPTSGTIVLTGRLDYTETKFYE
                     MEILAVDRGMKLYGSSGISSMAKLTVHVEQANECAPVLTAVTLSPSELEKDPTYAIIT
                     VEDCDQGANGEVASLSIVAGDLLQQFRTVRTSPGSKEYKLKAVGDIDWDSHPFGYNLT
                     LQAKDKGSPPQFSSVKVIQVTSPRFKAGPVKFEKEVYRAEISEFAPPSTPVVTVKATP
                     SYSHLKYVFKSTPGKAKFSLNHNTGLISILEPIKRQQASQFELEVTTSDRKASTKVLV
                     KVLSANSHPPEFTQTAYKASFDENVPIGTTVMSVSAIDPDEGENGYVTYSIANLNHVP
                     FVINHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEILATLTLNNLNDNTP
                     LFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVRYQTEAGNELDLFSLNPSSGVLS
                     LKQSLMNGLGAKVSFHSLRITATDGENFATPLYINITVAALRKPVNLHCEETGVARML
                     AEKLLQANKLHSQGEVEDVFFDSHSVNAHTPQFRSTLPAGIEVKENHPVGSSIIFMNA
                     TDLDTGFNGKLVYAISGGNEDSCFIIDMETGMLKILSPLDRETTDRYTLNVTVSDLGL
                     PQKAAWRLLEIRVLDANDNPPEFLQENYFVEVSEDKEINSEIIQVEATDKDLGPNGHV
                     TYSLLTDTDKFSIDSTTGVVKIVNPLDREEQHVHYVKIEARDQAREEPQLLSMVLLKV
                     SLEDVNDNPPKFIPPNYRVKVREDLPEGTIIMWLETYDPDLSQSSQVRYSLMDHGEGN
                     FDVDKLSGAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYIEVEVIDVNENLHP
                     PVFPSFVEKGVVKENVPVGSSVMKVSAHDEDTGRDGEIHYSIRDGSGVGVFKIDEETG
                     VIETSGRLDRESTSHYWLTVYASDQGVVPLSSFVEVYIELEDVNDNAPQTSEPVYYPE
                     IMENSPKDVSVVQIEAFDPDSSSDDKLTYKITSGNPQGFFSINPKTGLITTTSRKLDR
                     EQQGEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQKFYKIRLPEREKPERE
                     RNTKREPLYRVIATDKDEGPNAEISYSIEEGNEHGKFFIEPKTGVVLSKKFSGAGEYD
                     ILSIKAVDNGRPQKSSTTRLHIEWISKPKPSPEPISFEESFFTFTVMESDPVAHMIGV
                     IAVEPPGIPLWFDIIGGNYDSHFDVDKGTGTIIIAKPLDAEQKSNYNLTVEATDGTTT
                     ILTQVFIKVIDTNDHRPQFSTSKYEVVILEDTAPETEILQISAVDKDEKNKLIYTLQS
                     SIDPLSLKKFRLDPATGSLYTAEKLDHEAIQQHVLTVMVRDQDVPVKRNFARIVVNVS
                     DTNDHAPWFMSSSYKGRVYESAAIGSVVLQVTALDKDKGKNAEVLYSIESGNIGNSFT
                     IDPILGSIKTAKELDRSNQVEYDLMVKAIDKGNPPMSEITSVCIFVTIADNASPKFTS
                     KEYSVEISETISIGSFVGMVTAHSQSSVVYEIKDGNIADAFDINPHSGSIITQKALDF
                     ETLPIYTLTIQGTNMAGLSTNTTVLVHLQDENDNLPVFTQAEYTGLISESASIHSVVL
                     TDRNVPLVIRATDADKESNALLVYHIVEPAVHKYFTVDSSTGAIHTVLSLDYEQTSTF
                     HFTVQVHDMGTPCLFAEYAANVTIHVIDINDCPPVFSTSLYEASLLLPTYKGVKVITV
                     NATDADSSALSQLMYSITEGNIGEKFLMDHKTGTITVQNTTQLRSRYELTVRASDGRF
                     ASLTSVKINVKESKESQLKFTQDFYSAVVKENSTEARRLAVITAIGNPINEPLFYHIL
                     NPDRRFKISRTSGVLSTTGIPFDREQQETFNVVVEVTQERKPSAVARVIVKVIVEDQN
                     DNAPVFVNLPYYAVVKVDTAVGHVIRYVTAIDRDGGRNGEVHYYLKEHHEHFQIGASG
                     EISLKKQFEPDTLNKEYLVTVVAKDGGNPAFSAEVMVPITVMNKAMPVFEKPFYSAEI
                     PENVQMHSPVVHVQANSPEGLKVFYSITDGDPFSQFTINFNTGVINVIAPLDFESHPA
                     YKLSIRATDSLTGAHAEVFVDIIVEDVNDNPPVFAQQSYATTLSEASVIGTSVVQVRA
                     TDSDSEPNRGISYHMFGNHSKSHDHFHIDSSTGLISLVRTLDFEQFQQHKIFVRAVDG
                     GMPPLSSDVVVTVDVTDLNDHPPLFDQQIYEARISEHAAHGHFVTCVKAYDEDSSDID
                     KLEYSILSGNDHKNFVIDSRTGIITLSNLRRHALKPSYTLQVSVSDGVFRSSAQVHVS
                     VIGGNLHSPIFLQNEYEVELAENAPLHTLVTEVKATDGDSGIYGHVTYHIVNDFAKDR
                     FYTNERGQIFTLEKLDRETPVEKVIPVRFMAKDTGGKVAFCTINVILTDDNDNAPQFR
                     ATKFEVNIGSNAPKGTSVIKVLASDADEGSNADMTYAIEADSEGVKENLEINRLSGII
                     TTKESLIGLENEVFTFFVRAVDNGSPPKESVVPVYVKVLPPEMRLPRFSEPFYTYTVS
                     EDVPIGTEIDLIRAEHSETVLYSLVKGNTPESNRDEFFVIDRQSGRLKLEKGLDHETT
                     KWYQFSVLARCTHDDYEVVASVDVSIQVKDANDNSPVLESSPYEAFTVENLPGGSRVI
                     QIRASDLDSGTNGQVMYSLDQSQSVEVIESFTINMETGWITTLKELDHEERDSYQIKV
                     VASDHGEKVQLSSTAIVVVTVTDVNDSPPRFTAEIYKGTVSEDDPPGGVIAILSTTDA
                     DSEEINRQVTYYITGGDPLGQFAIENIQNEWKVYVKKPLDREKRDNYLLTITATDGTF
                     SSKAIVEVKVLDANDNSPICEKTLYSDMIPEDAFPGKLIMQVSATDADIRSNAEITYT
                     LFGPGAEKFKLNPDTGELKTLAPLDREDQATYNLLVKATDGGGRFCQADIVLTLEDVN
                     DNAPQFSADPYTITVFENTEPGTLLTRVQATDVDAGLNRKVSYSLINSADGQFSINEL
                     SGIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATGTVVVSILDINDNPPVFEYREY
                     GATVSEDVLIGTEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGAIFIVENL
                     DYESSHEYYLTVEATDGGTPSLSDVVTVNVNVTDINDNTPVFSQDTYTAVISEDAVLE
                     QSVITVMADDADGPSNSHIHYSIIDGNQGSPFTIDPARGEVKVTKLLDRETISGYTLT
                     VQASDNGSPPRVTTTTVNIDVSDVNDNAPIFSRGNYSLIIQENKPVGFSVLQLAVTDR
                     DSSHNGPPFFFSIVSGNKEGAFEVNQQGALLTAAAINRKVNDHYLLHIKVADNGKPQL
                     SSLTYIDIRVIEESIYPPAILPLEIFITAFGEEYSGGVIGKIHATDQDVYDTLTYSLD
                     PQMGSLFSVSSTGGKLIAHKKLDVGQYLLNVSVTDGKFTTAADVTVHIRQVTQEMLNQ
                     TVAVRFGNLTPEEFVGDYWRNFQRALRNILGVRRSDIQIVSLQPSEPHPHLDILLFVE
                     KSGSTQVSTKQLLHKINSSVTDIEEISGVRILDVFQKLCAGLDCPWRFCDEKVSVDES
                     AMSTHSTARLSFVTPRHRRTAVCLCTGGKCPLVHHGCEDSPCPEGSECVTDPREETYS
                     CVCPGGKFGQCPGSSSVTFTGNSFVKYRLMENENKLEMKLTMRLRTYSTHAVVMYARG
                     TDYSILEIHNGRLQYKFDCGSGPGIVSVQSIQVNDGLWHAVSLEVNGNYARLVLDQVH
                     TASGTAPGTLKTLNLDSHVFFGGHIRQQGSRHGRSPQIGSGFRGCMDSIYLNGQELPL
                     NNKPRSYAHIEESVDVSPGCLLTATEDCSSSPCQNGGACHPSPTGGYYCKCSALYIGT
                     YCEVGINPCSSNPCLYGGTCIVDNGDFLCQCRGLYTGQRCQLSPYCKDEPCKNGGTCF
                     DSLDGAVCQCDSGFRGERCQSDIDECAGNPCRNGALCENTHGSYHCNCSREYRGRHCE
                     DVTPNQYVSTPWDIGLAEGIGIVVFITGIFLLVLLFIFCRKMISRRKKHQPKPEDKHL
                     GPSAAFLQRPYFDSKLNKNMYSDVPPQVPVRPISYTPSIPSDSRNNLDRNSFEGSAIP
                     EHPEFSTFNPESVHGHRKAVAVCSVAPNLPPPPPSNSPSDSDSIQKPNWDFDYDTKVV
                     DLDPCLSKKPLEEKPSQPYSARESLCEVQSLSSFQSEPCDDNASIVTVIHHVNAVVDT
                     VTKEGYHWDTSDWMPSVPLPDIQEFPNYEVIDEQTPLYSADPNAIDTDYYPGGYDIES
                     DFPPPPEDFPVPDELPPLPPEFSDQFESIHPPRDMPAAGSLGSSSRSRQRFNLNQYLP
                     NFYPADMSEPQKAGPGENSARREPYAPYPPGYQRSFEASTVENMPVSMYASTASCSDV
                     SACCEAESEVMMSDYESGDDGHFEEVTIPPLDSQQHTEV"
     misc_feature    1292..1612
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1313..1318,1505..1507,1511..1513,1601..1603,
                     1607..1612)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1637..1936
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1658..1663,1811..1813,1817..1819,1925..1927,
                     1931..1936)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2000..2248
                     /gene="FAT1"
                     /note="Cadherin repeat-like domain; Region: CA_like;
                     cl46864"
                     /db_xref="CDD:481204"
     misc_feature    2291..2557
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2312..2317,2459..2461,2465..2467,2543..2545,
                     2549..2554)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2582..2875
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2600..2605,2756..2758,2762..2764,2861..2863,
                     2867..2872)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2903..3169
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    3350..3634
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3362..3367,3521..3523,3527..3529,3620..3622,
                     3626..3631)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3659..3949
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3677..3682,3830..3832,3836..3838,3935..3937,
                     3941..3946)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3974..4264
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3992..3997,4148..4150,4154..4156,4250..4252,
                     4256..4261)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4307..4585
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4313..4318,4472..4474,4478..4480,4571..4573,
                     4577..4582)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4607..4903
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4628..4633,4790..4792,4796..4798,4889..4891,
                     4895..4900)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4928..5212
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    5267..5536
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5285..5290,5432..5434,5438..5440,5522..5524,
                     5528..5533)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5561..5854
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5579..5584,5741..5743,5747..5749,5840..5842,
                     5846..5851)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5876..6154
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    6191..6463
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(6212..6217,6356..6358,6362..6364,6449..6451,
                     6455..6460)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6485..6802
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(6506..6511,6686..6688,6692..6694,6791..6793,
                     6797..6802)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6863..7090
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    7130..7411
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7148..7153,7298..7300,7304..7306,7397..7399,
                     7403..7408)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7433..7702
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    7739..8017
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7757..7762,7907..7909,7913..7915,8003..8005,
                     8009..8014)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8039..8338
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(8060..8065,8225..8227,8231..8233,8324..8326,
                     8330..8335)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8360..8644
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(8381..8386,8540..8542,8546..8548,8630..8632,
                     8636..8641)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8666..8956
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(8687..8692,8843..8845,8849..8851,8942..8944,
                     8948..8953)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8981..9262
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    9302..9595
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9320..9325,9479..9481,9485..9487,9581..9583,
                     9587..9592)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9617..9886
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    9944..10237
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9965..9970,10133..10135,10139..10141,10223..10225,
                     10229..10234)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10274..10543
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10280..10285,10436..10438,10442..10444,10529..10531,
                     10535..10540)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10565..10858
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10586..10591,10742..10744,10748..10750,10844..10846,
                     10850..10855)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10880..11173
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10901..10906,11060..11062,11066..11068,11159..11161,
                     11165..11170)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    11195..11488
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(11216..11221,11375..11377,11381..11383,11474..11476,
                     11480..11485)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    11513..11788
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    11861..12082
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    12740..13135
                     /gene="FAT1"
                     /note="Laminin G domain; Region: LamG; smart00282"
                     /db_xref="CDD:214598"
     misc_feature    13226..13330
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    13337..13444
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    13457..13549
                     /gene="FAT1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    13559..13669
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(13559..13561,13568..13570,13610..13612)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
ORIGIN      
        1 agagacccgc cggacggtgg tggcgccgag gcccctgccc acttggaaag ttcagggcag
       61 gccctggatt cgggtgggtg ggcggaggcg gatgggcggg agcggttaag gcgcgacgtg
      121 acccgaatgg taattaccta cccgactgct gctgcgagct ggcggcggcc ccggctgcac
      181 cggctctggc cccggagcca ttgctggaaa tcaaagcggc agccgcggcg cggggttccc
      241 ggcggcctct gggcgagaac ttccgcctcg cccggagctc ggaaacttca cacgcgcgtt
      301 ccactttctt ctctccggta acacgcgtgc ctgttaaaga cttatctgat ctcgctccgc
      361 ggctaatttc ttgcgatttg taagatattc acagcgttgg tgtgatgaaa ggagaggcca
      421 actgctaagg gatgggatct ttgaaatgga gtcaccgagt tcttttagat gtttcgtgcc
      481 ctgaaggagt gctgtcctga ggtttgagtt gtaactggtt gaatgtagtt aagcatagga
      541 acatccgacg tccttcaccc ttcatccatg aggccatact gatgaaaaca aatgataaag
      601 acattaggag agaatagaca aatctccctt acagaagaac tctaaacaat ttatgtaaca
      661 taactctcca cccctaagtg tggactgcac gtagcgactt ccttccaaag ggcacagtag
      721 gggaaggggg cagcaagtac cccgctgcgg agaaacccga caagcgctgc ttcaacccag
      781 tgaacagggt cagcatcagc atcgatgtga tgtgatgaaa atggcacttt accccgttct
      841 cttcctcctc tcaacgcata gccccagtct aatcatgcgg aaaaacatca gacaaattcc
      901 agtggaggga cgttctgcaa aatacctgac cagtacttct caaaactgtc agggttattg
      961 aaaacaagac aaatcagaga aactgttaca gtccagagga gcctaagaga acacgatgac
     1021 tgaatccctt cagtctgctg tttctcttac cttggggagc agtcccgttt cccgaatatt
     1081 catcggagag gtcctttgcc agggctgcag cgctgtcctc ttctgaccat gctcggacgt
     1141 ttgtgaagct ccattcattt atgaggttcc tgggagttaa gcgatgggga ggcatttggc
     1201 ctcgcttctg cttttgctcc tcctccagca ttttggagac agtgatggaa gccaagcact
     1261 tgaacaaact cctgtacagt tcacacattt ccagtacaat gtcacagtgc atgaaaattc
     1321 tgcagcaaag acctatgttg ggcatcccgt aaagatgggt atttacatta caaatccact
     1381 gtgggagtta aggtacaaaa ttgtctcagg agacaatgaa aacctattca aagctgaaga
     1441 gtacattctt ggagactttt gctttctgag aataaggacc aaaggaggaa atacagctat
     1501 tcttaataga gaagtgaaag accattacac gttgatagtc aaagcagttg aaaaaaatac
     1561 taatatggaa gcacgaacaa aggtcagggt acaagtgctg gatacaaatg acttgaggcc
     1621 attattctca cccacctcgt acagtgtttc tttacctgaa aacacagccc tgaggaccag
     1681 tattgcaaga gtcagtgcca cggatgcaga cataggcacc aatggagaat tttactacag
     1741 ttttaaagac cgaacagaca tgtttgctat ccaccccacc agtggcacca tagttttaac
     1801 tggtagactt gactacacag agaccaagtt ctatgagatg gaaattcttg ctgtggaccg
     1861 tggcatgaaa ttgtacggga gcagtggtat cagcagcatg gctaagctga cagttcacgt
     1921 agagcaggcc aacgagtgtg ctcctgtgtt aacagcagtg acgttatcac catcggaatt
     1981 ggagaaggac ccaacgtatg ccatcataac cgtggaggac tgcgatcagg gtgccaatgg
     2041 ggaagtcgct tctttaagca ttgtggcagg agacctcctt cagcagttta gaacagtgag
     2101 gacctctcca gggagcaaag agtataaact caaagcagtc ggtgacattg attgggacag
     2161 tcatcctttc ggctacaacc tgacactaca ggcgaaagat aaaggaagtc ctccccagtt
     2221 ctcttctgta aaagtaattc aggtgacttc accacggttc aaagctgggc cagtcaagtt
     2281 tgaaaaggag gtttacagag cagaaataag tgaatttgct cctcccagca cacccgtggt
     2341 cacggtgaaa gccacaccta gctattctca tttgaagtat gtttttaaaa gtacacctgg
     2401 aaaagctaaa ttcagtttaa atcacaacac tggtctcatt tccattttag aaccaattaa
     2461 aagacagcaa gcctcccagt ttgaacttga agtaacaaca agtgacagaa aagcctcgac
     2521 caaagtcttg gttaaagtct tgagtgcaaa tagccatccc cctgaattta cccagacagc
     2581 ctacaaagca tcttttgacg agaacgtgcc cattggtact acggtgatga gtgtgagtgc
     2641 tatagaccct gatgagggtg agaacgggta tgtgacgtac agcattgcaa atttgaatca
     2701 tgtgccgttt gtgattaacc atttcaccgg tgctgtgagt acttcagaga acttggacta
     2761 tgagctgatg ccacgggttt atactctaag gattcgggca tcagactggg gcttgccata
     2821 ccgccgggag gttgaaatcc ttgctaccct cactctcaat aacttgaatg acaacacacc
     2881 cctgtttgag aagataaact gtgaaggaac aattcccagg gacctaggtg taggggagca
     2941 gataaccact gtttctgcca ttgacgcgga tgaactgcag ttggtgcggt atcagactga
     3001 agctgggaat gaactggatt tgttcagctt aaaccccagc tccggggtat tgtcattaaa
     3061 gcagtcgctc atgaatggtt taggggcaaa ggtgtcattt cacagtctga gaattacagc
     3121 tacagatgga gagaattttg ccacaccatt atacatcaac ataactgtgg ctgcccttcg
     3181 caagccagta aacttgcact gcgaggagac tggtgtggcc aggatgctgg cagagaaact
     3241 cctgcaggcc aataagttac acagtcaggg agaggttgag gatgtcttct ttgattctca
     3301 ctctgtcaat gctcacacac cacagtttag aagtaccctt ccagctggta ttgaggtgaa
     3361 ggaaaatcat cccgtgggtt ccagcataat tttcatgaat gctactgacc tggacactgg
     3421 cttcaacgga aaactggtct atgctatttc tggaggaaat gaggatagtt gcttcattat
     3481 tgacatggaa acaggaatgc tcaaaatttt atccccgctt gaccgtgaaa caacagacag
     3541 atataccctg aatgttacgg tgtctgacct cggtctgcca cagaaggctg cttggcgtct
     3601 tctggagatc agagttctgg atgccaatga taacccacct gagtttttac aggagaacta
     3661 tttcgttgaa gtgagtgaag acaaagagat aaatagtgaa atcatccagg ttgaagccac
     3721 agataaagat ctggggccca atggacatgt gacatactct cttcttacag acacagataa
     3781 attttcaatt gacagcacaa ctggagtggt gaaaatcgtg aaccccttgg atcgtgaaga
     3841 acagcacgtg cattacgtaa agattgaagc cagggatcaa gccagagaag aaccgcagct
     3901 gctttccatg gtgcttctga aggtatcatt agaggatgtt aatgacaacc cacccaagtt
     3961 tattccccct aattaccgtg tgaaagttcg agaggacctt ccagaaggaa ccataatcat
     4021 gtggttagag acctatgatc ctgatttaag tcagtctagt caggtgagat acagtcttat
     4081 ggaccacgga gaaggaaact ttgatgtgga taagctcagt ggagcagtta gaatcataca
     4141 gcagttggac tttgagaaga agcaagtgta taatctcact gtgagggcca aagacaaagg
     4201 gaagcccatt tctctgtctt ccacttgcta cattgaagtt gaagtcatcg atgtgaatga
     4261 gaacttacac ccaccagtgt ttcctagctt tgtggaaaag ggtgtagtga aagaaaatgt
     4321 ccctgttggt tcatcagtga tgaaggtatc agctcatgat gaggacacag gaagagatgg
     4381 ggagatccac tattccattc gagatggttc tggtgttggt gttttcaaaa tagatgaaga
     4441 aacaggtgtt atagagactt caggtcgact ggaccgcgag tccacctccc attactggct
     4501 aacggtctac gcgtctgatc agggcgtcgt gcccctttcc tcctttgtag aggtctatat
     4561 agagctggag gatgtgaacg acaatgcacc gcagacttca gagcctgttt attatccgga
     4621 aataatggaa aactctccca aggatgtgtc tgtggtccag attgaggcat ttgatccaga
     4681 ttctagctcc gatgacaagt tgacatacaa aattacaagt ggaaatccac aaggattttt
     4741 ttcaataaat cctaagacag gtctcatcac gactacatcc aggaaactag accgtgagca
     4801 gcaaggtgaa cacatattag aagttacagt gacagacaat ggtagtcccc ccaagtcaac
     4861 cattgcaaga gtaattgtga agatccttga cgaaaatgac aacaagcctc agttcctgca
     4921 gaagttctac aaaatcagac tcccagagcg ggaaaaacca gaacgagaaa gaaacaccaa
     4981 gcgcgagcct ttatatcgtg ttatagctac agacaaagat gaaggtccca atgcagaaat
     5041 ctcctatagc attgaagagg gaaatgaaca tggcaaattt tttattgagc caaaaactgg
     5101 agtggttttg tccaagaagt tttctggagc tggagaatat gatattcttt caattaaggc
     5161 agttgataat ggtcgccccc aaaagtcatc aaccactcga ctccatattg aatggatctc
     5221 caaacccaaa ccgtccccgg agccaatttc atttgaagaa tcatttttta cctttactgt
     5281 aatggaaagc gatccagttg ctcacatgat tggagtaata gctgttgagc ctccaggcat
     5341 acctctttgg tttgacatca ttggtggcaa ctatgatagt cactttgatg tggacaaggg
     5401 cactggaacc atcattattg ccaaacctct tgatgcagaa caaaaatcaa actacaatct
     5461 cacagtcgag gctacagatg gaaccaccac tatactgact caggtattca tcaaagtaat
     5521 agacacaaat gaccatcgtc ctcagttttc tacatcaaaa tatgaagttg ttattcttga
     5581 agacacagca ccagaaacag aaattttgca aatcagtgct gtggataaag atgaaaaaaa
     5641 caaactaatc tacactctgc agagcagtat cgatccattg agtctcaaga aatttcgcct
     5701 tgatcctgca actggctctc tctatacagc agaaaaactt gatcatgaag ccattcagca
     5761 gcatgttctc acagtcatgg tacgagatca agatgtccct gtaaagcgca actttgcacg
     5821 gattgttgtt aatgtcagcg acaccaatga ccacgccccc tggttcatga gctcctccta
     5881 caaagggcgg gtttatgaat cagcagctat cggctcagtt gtgttgcagg ttacagctct
     5941 ggacaaggac aaagggaaaa atgctgaagt gctgtactct atcgaatcag gaaacattgg
     6001 aaattctttt acaattgatc ccatcttggg ctctataaaa actgccaaag aattagatcg
     6061 aagtaaccaa gtggaatatg acttaatggt aaaagctata gataaaggca acccaccaat
     6121 gagtgaaatc acttctgtgt gtatctttgt caccatcgct gacaacgcct ctcccaagtt
     6181 tacatcaaaa gagtattctg ttgaaattag tgaaactatc agcattggga gtttcgtcgg
     6241 aatggttaca gcccatagtc agtcatcagt ggtatatgaa ataaaagatg gaaatatagc
     6301 tgatgccttt gatattaatc cacattctgg aagtatcatc actcagaaag ctttggattt
     6361 tgaaactttg cccatttata cattgacaat acaaggaact aacatggctg gtttgtctac
     6421 gaatacaacc gttctagtgc atctgcagga tgaaaatgac aacttgccag tttttacgca
     6481 ggcagaatat acggggctca ttagcgaatc agcttcaatt cacagtgtgg tcctaacaga
     6541 caggaatgtc ccattagtta ttcgagccac tgatgctgat aaagaatcaa atgctttgct
     6601 tgtttatcac attgttgagc cagctgtaca caaatatttt actgttgatt ccagcactgg
     6661 tgctattcac acagtactaa gtttggacta tgagcagaca agtacttttc acttcactgt
     6721 acaagttcat gacatgggaa caccatgttt atttgctgaa tatgcagcca acgtgactat
     6781 ccatgttatt gacattaatg actgccctcc tgtgttctcc acatcattgt atgaagcatc
     6841 tcttttgttg ccaacataca aaggagtcaa ggtcattaca gtaaatgcta cagatgctga
     6901 ttcaagcgca ttgtcacagt taatgtactc catcaccgaa ggcaacatcg gggagaagtt
     6961 cttaatggac cacaagactg gtactataac tgtacaaaac acaactcagt tgaggagccg
     7021 ctatgagtta actgtcaggg cctctgatgg cagatttgca agcttaacct ctgtgaagat
     7081 taacgtgaaa gaaagcaaag aaagtcagct gaagtttacc caagatttct actctgcggt
     7141 agtgaaagag aattctactg aagccagaag attagctgtc ataactgcta tcgggaatcc
     7201 aatcaacgaa cccctgtttt atcacatcct caacccagat cgcagattca aaatcagccg
     7261 cacgtccgga gttctgtcga ccactggcat accgtttgat cgtgaacagc aggagacctt
     7321 taatgtggta gtggaagtga cacaagaacg caagccttca gcggtggccc gtgtcattgt
     7381 aaaggtcatc gtcgaagacc agaatgataa tgcaccggtg tttgtcaacc tgccttacta
     7441 cgccgtcgtt aaagtggata ccgccgtggg ccatgttatt cgctatgtga cagccatcga
     7501 cagagacggc ggcaggaacg gggaagtgca ctactacctc aaggaacacc acgaacactt
     7561 ccaaattgga gcctcagggg aaatttcact gaaaaaacag tttgaacctg acaccttaaa
     7621 taaagaatat cttgtcacag tggttgcaaa agatggagga aacccagctt tttcggctga
     7681 agtcatggtt cccatcaccg ttatgaacaa agccatgcct gtgtttgaaa agcctttcta
     7741 cagtgccgag attccagaga acgtccagat gcacagcccc gttgtccacg tacaagccaa
     7801 cagtccagag ggcttgaaag tgttctatag catcacagac ggtgatcctt tcagccagtt
     7861 tactattaac ttcaacactg gagttatcaa tgtcatagcg cctctggact ttgagtccca
     7921 cccagcatat aaactgagca tccgagcgac tgactccttg accggtgctc acgctgaggt
     7981 ctttgtggac ataatcgtgg aagacgtcaa tgacaaccct cccgtgtttg cccagcagtc
     8041 ctatgccacc accctgtccg aggcatctgt aatcggcaca tccgtggttc aagtcagagc
     8101 aacagattct gactcagaac caaacagagg gatttcatac catatgtttg ggaatcacag
     8161 caagagtcat gatcattttc acatagacag cagcactggc ctcatttccc tggttaggac
     8221 tttggatttt gagcagttcc agcagcacaa gatttttgta agggctgttg atggcggcat
     8281 gcctcctctg agcagcgatg tggttgtcac agtggatgtc accgacctca acgatcaccc
     8341 accactattt gaccaacaga tatatgaagc cagaattagc gagcacgctg cccatgggca
     8401 ttttgtgacc tgtgtaaaag cctatgatga ggacagttca gacatagaca agttggaata
     8461 ttccattctg tctggcaacg atcataagaa ttttgtcatt gacagcagga cggggatcat
     8521 cactctctca aacctgcgcc ggcatgccct gaagccatcg tacacccttc aggtttctgt
     8581 gtctgacgga gtttttagga gttcagctca ggttcatgtg agtgtgattg gaggcaattt
     8641 gcacagtccc atttttcttc agaacgaata tgaagtggag cttgctgaaa atgctccctt
     8701 gcacaccctg gtgaccgagg ttaaagcaac tgatggggat tcgggtattt acggtcacgt
     8761 tacctaccac attgtaaatg actttgccaa agacaggttt tacacaaatg agagaggaca
     8821 gatctttact ttagaaaaac ttgatcgaga aaccccagtg gaaaaagtaa tcccagttcg
     8881 tttcatggcc aaggacactg gtggaaaagt tgctttctgc accattaacg tcatccttac
     8941 agatgacaac gataatgcac cacagtttcg agcaaccaag tttgaggtga atattggatc
     9001 caatgctccc aaagggacgt cagtcatcaa agtccttgcc agtgacgctg atgagggatc
     9061 caatgccgac atgacctatg ccattgaagc agattctgaa ggcgttaaag agaatttgga
     9121 aattaacaga ctgtctggca taataactac aaaagaaagc ttaattggct tagaaaatga
     9181 ggtcttcact ttctttgtca gagctgtgga taatgggtct ccacccaaag aatctgttgt
     9241 tcccgtctat gttaaagtac ttccaccaga aatgcggctt ccaagatttt cagaaccatt
     9301 ttacacctat acagtttcgg aagacgttcc tattggaaca gaaatagatc tcattcgagc
     9361 agagcatagc gagactgtcc tttacagcct agtcaaaggg aatactccag agagcaacag
     9421 agatgagttc tttgtgatcg acagacagag tgggagactg aaactggaga agggtctgga
     9481 ccatgagaca actaagtggt accagttttc cgtacttgcc aggtgcactc acgatgacta
     9541 tgaggtggtg gcttctgtag atgttagtat ccaagtgaaa gatgcaaatg ataacagccc
     9601 tgtcttggag tctagtccat atgaggcatt tactgttgaa aacctgccag ggggaagcag
     9661 agtcatccag atcagggcgt ctgatctaga ttcaggaacc aatggccaag ttatgtatag
     9721 tctagatcag tcacaaagtg tagaagtcat cgaatctttc accattaaca tggaaacagg
     9781 atggattaca accctaaagg aacttgacca cgaagagaga gacagttatc agattaaggt
     9841 ggttgcatca gatcatggtg aaaaggttca gctctcctcc acagccattg tggttgttac
     9901 tgtcaccgat gtcaacgata gtcccccacg gttcacagca gagatttata aagggactgt
     9961 gagtgaagat gatccaccag ggggcgtaat tgccatcctg agtaccacgg atgctgattc
    10021 tgaagagatc aacagacaag ttacatatta cataacagga ggggatcctt tggggcagtt
    10081 tgctattgaa aatatacaga atgaatggaa ggtctatgtg aagaaacctc tagataggga
    10141 aaaaagggac aattatcttc tgactatcac agcaactgat gggaccttct catcaaaagc
    10201 tatagttgaa gtcaaagtcc ttgatgcaaa tgacaacagt cccatttgtg aaaagacttt
    10261 atattccgac atgattccag aagatgcctt tcctgggaaa ttgatcatgc aggtctctgc
    10321 tacagatgca gatatccgtt ccaatgccga aattacttac acattatttg gtccaggtgc
    10381 agaaaaattc aaactaaatc cagacacagg tgaactgaaa acattagccc cccttgaccg
    10441 cgaggaccag gcaacctata atcttctggt caaagccacg gatggagggg gaagattctg
    10501 tcaagctgat attgtgctca cgttagagga tgtgaatgat aatgcccccc aattctctgc
    10561 tgatccttac accatcaccg tgtttgaaaa cacagagcct ggcacgctcc tgacaagggt
    10621 acaggccacg gatgtggatg caggactgaa tcggaaggta tcctactcac tgattaactc
    10681 tgctgatgga cagttctcca ttaatgaatt atctggaatc attcagttag aaaagccttt
    10741 ggatagagaa ctacaggcag tatacactct aactttgaaa gctgtagatc atggtttgcc
    10801 aagaaggttg acagctaccg gcactgttgt tgtatccatt ttggatataa atgacaaccc
    10861 acccgtgttt gaataccgtg aatatggtgc tacagtgtct gaggatgttc tcattggaac
    10921 agaagttctt caagtgtatg cagcaagtag ggacattgaa gcaaatgcag aaatcaccta
    10981 ctcgataata agtggaaacg aacatgggaa attcagcata gattctaaaa caggggccat
    11041 atttatcgtt gagaatctgg actatgaaag ctctcatgag tattacctga cggtggaagc
    11101 cactgatggg ggcacacctt cactgagtga tgttgtaact gtgaacgtca atgtaacaga
    11161 catcaatgac aataccccag tgttcagcca agacacctac acggcggtga tcagtgaaga
    11221 tgctgttctt gaacagtctg tcattacagt tatggcagat gatgccgatg gaccttcaaa
    11281 cagccacatc cactattcaa ttatagacgg caatcaagga agtccattta caatcgaccc
    11341 tgccagggga gaagtgaaag tgaccaaact tctagaccgg gaaacaattt cgggttacac
    11401 gctcaccgtg caggcctcgg acaacggcag tccacccaga gtcaccacga ccactgtgaa
    11461 catagacgtg tctgatgtca atgacaacgc tcccatcttc tccaggggaa actacagcct
    11521 gatcatccag gaaaataagc ccgtggggtt cagcgtgctg cagctggcag tgacggacag
    11581 ggactcctcc cacaatggcc ctcccttctt cttcagcatt gtgagtggaa acaaggaggg
    11641 ggcatttgaa gtcaaccagc agggagccct cctgacggca gctgccataa ataggaaagt
    11701 gaacgatcat tacttactgc acattaaggt ggcagataac ggaaagcctc agttgtcatc
    11761 tttgacatac attgacatta gagtcattga agagagcatc tatcctcctg caattttgcc
    11821 actagagatt ttcattactg cttttggaga ggagtactca ggtggtgtca ttgggaagat
    11881 ccacgcgacg gaccaagacg tgtatgacac gttaacctac agcctcgatc cccaaatggg
    11941 cagcctcttc tctgtctcca gcacgggggg caagctgata gcccacaaga agctggacgt
    12001 agggcagtac cttctcaacg tcagcgtaac ggatgggaaa tttaccaccg cagctgatgt
    12061 cacggtgcac atcagacaag tgacgcagga gatgttgaac cagaccgtgg ccgtccgctt
    12121 tggcaacctc accccggaag agttcgttgg tgactattgg cgcaacttcc agcgagcttt
    12181 gcggaacatc ctgggcgtga ggaggagtga cattcagatc gttagcttgc agccctccga
    12241 gcctcatccg cacctggaca tcttgctttt tgtagagaaa tcaggtagca cccaggtctc
    12301 aacaaaacaa cttctgcaca agattaattc ttccgtgacg gatattgagg agatcagtgg
    12361 tgtgaggata ttggatgtgt tccagaagct ttgtgcaggg ctggattgcc cctggagatt
    12421 ctgcgacgaa aaggtgtccg tggatgaaag tgcgatgtca acgcatagta cggccagact
    12481 gagctttgtg accccgcgcc accgtaggac agctgtgtgt ctctgcacag ggggaaaatg
    12541 cccacttgtc catcatggat gtgaagacag tccatgccct gaaggatctg aatgtgtcac
    12601 tgatcccaga gaggagacat acagctgcgt ctgtccaggt ggcaagtttg gccagtgccc
    12661 agggagttca tccgtaacat ttactggaaa cagctttgtg aaatatcgtc taatggaaaa
    12721 tgaaaacaag ttagagatga aactgaccat gaggctgcga acatactcta cccacgcggt
    12781 tgtcatgtac gctcgcggaa ctgactacag catcttggag atccacaacg gaaggctgca
    12841 gtacaaattc gactgtggaa gcggcccagg catcgtctct gtccagagca tccaggtcaa
    12901 cgatgggctg tggcacgcgg tgtctcttga agtgaatgga aactatgcca ggttggttct
    12961 agaccaagtc cacaccgcat caggcacagc cccggggacg ctgaaaaccc tcaacctgga
    13021 tagccatgtg ttttttggtg gccacatccg tcagcagggc tcacggcatg gaagaagccc
    13081 ccagattggc agtggtttca ggggttgtat ggactccatt tatctgaatg ggcaggaact
    13141 ccctttaaat aacaaaccaa ggagctacgc acacattgaa gaatcggtgg acgtgtctcc
    13201 tgggtgcttg ttaacagcta cggaagactg ctcgagcagc ccatgccaga acggaggcgc
    13261 ctgccacccc tcacccactg gaggttatta ctgtaaatgc agtgccttgt acatagggac
    13321 ctattgtgaa gtgggcatca atccgtgttc ctccaatccc tgcctgtacg gtggcacctg
    13381 cattgtggac aatggagact tcctttgtca atgtagagga ttatatactg gtcagaggtg
    13441 ccagcttagt ccctactgca aagatgaacc ctgtaaaaat ggtggaacat gttttgacag
    13501 tttggatggt gctgtctgtc agtgtgactc gggttttagg ggagaaaggt gtcagagtga
    13561 cattgacgaa tgtgctggca acccctgccg aaatggagcc ctttgcgaga acacacacgg
    13621 ctcctaccac tgtaactgca gccgtgagta cagaggaaga cactgtgagg acgtcacccc
    13681 aaaccaatac gtgtcgaccc cctgggacat cggcctggct gagggcatcg gcatcgtggt
    13741 tttcataacg ggcatcttcc tactggtgct gctgttcatc ttctgccgca agatgattag
    13801 tcgaaggaag aaacaccagc ccaaacctga ggacaaacac ttgggaccca gcgcagcttt
    13861 cttgcaaaga ccatattttg actcaaagct caataagaac atgtactccg acgtaccacc
    13921 ccaggtgcct gtccgtccta tctcctacac tccaagcatt ccaagcgact ctagaaacaa
    13981 ccttgaccga aactccttcg aaggatcggc tatacccgag caccccgaat tcagcacctt
    14041 taaccccgag tctgtgcacg gacaccggaa ggccgtggcc gtctgcagcg tggccccaaa
    14101 cctgcctccg ccgcctcctt caaactctcc ttctgacagt gactcaatcc agaagccgaa
    14161 ctgggacttc gactatgata ctaaagtagt ggatcttgat ccttgtctct ccaaaaagcc
    14221 actggaggaa aagccttctc agccgtacag tgcccgggag agcctgtgtg aagtgcagtc
    14281 cctgagctcc ttccagtcgg agccgtgtga tgacaacgct tccatagtga ctgtaataca
    14341 ccatgtcaat gctgtagttg acacggtgac taaagaaggg tatcactggg atacatcaga
    14401 ttggatgcca agtgttcctc tgccagatat acaagagttc cccaattatg aggtgattga
    14461 tgagcagacg cccctgtact cagcagatcc aaacgccatc gatacagact attaccctgg
    14521 aggctacgac atcgagagtg actttccacc cccgccggag gacttccccg tgcctgacga
    14581 gctgccaccc ttacctccag aattcagtga ccagtttgaa tccatacacc ctcccagaga
    14641 catgcccgct gcagggagcc tgggctcttc atcgagaagc cggcagaggt tcaacttgaa
    14701 tcagtatctg cccaatttct atcctgccga tatgtctgaa cctcagaaag caggccctgg
    14761 tgagaacagt gctcgcagag aaccctacgc cccttaccct ccagggtatc aaaggagctt
    14821 tgaagcctcc actgtagaga acatgcccgt gtccatgtac gcctccacag cttcctgctc
    14881 tgacgtgtct gcgtgctgtg aagccgagtc tgaggtcatg atgagtgact acgagagtgg
    14941 agatgatggc cacttcgaag aggtgacgat ccctccactc gattctcaac agcatacgga
    15001 ggtctgacgc tcagactccc cgcaaagtgc ctgaaccgta atgaacctag agattctgtc
    15061 agtgatctcc tgcattgatc tttgcagcag tgcttaagcg cttttttccg tgagctgaaa
    15121 cgggcatggc tgcactgaat cccacacctt gtgacctgtt agccatttcc agcgtcctaa
    15181 ccttctgtct ttgggtgagg tttacgtcgg ctgtgccatt tctgagcatc ttttttgtat
    15241 ttacatttgt ctgtgttaaa ataataaaat gaaaatcagt cctactatct tgttagcatg
    15301 attcatgtat ttatatagat ttgattattt taatttccct gtcttttttt gtaaatttta
    15361 tgtacagatt tgattttttc cagttttaac tagaatttca agatactttg tgcatttgtt
    15421 tttgaccgaa ttttggtggt gttagtgtca ttacctagca ccctgatttt ttaatataac
    15481 cagggtttca ctctgtatcc ttttcaactg aagtatgacg tttcgttaat acatttcagt
    15541 atagtcattc atttctatct gtacatagga tgaggacaga tcccatacat ggacatgtct
    15601 taaatgggtt gctgtatttt agaattgtaa agatttttca ttattggaaa ctgtaatggg
    15661 gaccttctgc agactgttta gaaccaaaac caccatgaca cagtttttat agtgtctgta
    15721 tatttgtgat gcaatggtct tgtaaaggtt tttactgaaa actaccatta gccagtcttt
    15781 cttactgaca ataaattatt aataaaata
//
LOCUS       XM_032618470           15046 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAT atypical cadherin 1 (FAT1),
            transcript variant X2, mRNA.
ACCESSION   XM_032618470
VERSION     XM_032618470.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15046
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15046
                     /gene="FAT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 112 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746777"
     CDS             445..14244
                     /gene="FAT1"
                     /codon_start=1
                     /product="protocadherin Fat 1 isoform X2"
                     /protein_id="XP_032474361.1"
                     /db_xref="GeneID:116746777"
                     /translation="MGRHLASLLLLLLLQHFGDSDGSQALEQTPVQFTHFQYNVTVHE
                     NSAAKTYVGHPVKMGIYITNPLWELRYKIVSGDNENLFKAEEYILGDFCFLRIRTKGG
                     NTAILNREVKDHYTLIVKAVEKNTNMEARTKVRVQVLDTNDLRPLFSPTSYSVSLPEN
                     TALRTSIARVSATDADIGTNGEFYYSFKDRTDMFAIHPTSGTIVLTGRLDYTETKFYE
                     MEILAVDRGMKLYGSSGISSMAKLTVHVEQANECAPVLTAVTLSPSELEKDPTYAIIT
                     VEDCDQGANGEVASLSIVAGDLLQQFRTVRTSPGSKEYKLKAVGDIDWDSHPFGYNLT
                     LQAKDKGSPPQFSSVKVIQVTSPRFKAGPVKFEKEVYRAEISEFAPPSTPVVTVKATP
                     SYSHLKYVFKSTPGKAKFSLNHNTGLISILEPIKRQQASQFELEVTTSDRKASTKVLV
                     KVLSANSHPPEFTQTAYKASFDENVPIGTTVMSVSAIDPDEGENGYVTYSIANLNHVP
                     FVINHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEILATLTLNNLNDNTP
                     LFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVRYQTEAGNELDLFSLNPSSGVLS
                     LKQSLMNGLGAKVSFHSLRITATDGENFATPLYINITVAALRKPVNLHCEETGVARML
                     AEKLLQANKLHSQGEVEDVFFDSHSVNAHTPQFRSTLPAGIEVKENHPVGSSIIFMNA
                     TDLDTGFNGKLVYAISGGNEDSCFIIDMETGMLKILSPLDRETTDRYTLNVTVSDLGL
                     PQKAAWRLLEIRVLDANDNPPEFLQENYFVEVSEDKEINSEIIQVEATDKDLGPNGHV
                     TYSLLTDTDKFSIDSTTGVVKIVNPLDREEQHVHYVKIEARDQAREEPQLLSMVLLKV
                     SLEDVNDNPPKFIPPNYRVKVREDLPEGTIIMWLETYDPDLSQSSQVRYSLMDHGEGN
                     FDVDKLSGAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYIEVEVIDVNENLHP
                     PVFPSFVEKGVVKENVPVGSSVMKVSAHDEDTGRDGEIHYSIRDGSGVGVFKIDEETG
                     VIETSGRLDRESTSHYWLTVYASDQGVVPLSSFVEVYIELEDVNDNAPQTSEPVYYPE
                     IMENSPKDVSVVQIEAFDPDSSSDDKLTYKITSGNPQGFFSINPKTGLITTTSRKLDR
                     EQQGEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQKFYKIRLPEREKPERE
                     RNTKREPLYRVIATDKDEGPNAEISYSIEEGNEHGKFFIEPKTGVVLSKKFSGAGEYD
                     ILSIKAVDNGRPQKSSTTRLHIEWISKPKPSPEPISFEESFFTFTVMESDPVAHMIGV
                     IAVEPPGIPLWFDIIGGNYDSHFDVDKGTGTIIIAKPLDAEQKSNYNLTVEATDGTTT
                     ILTQVFIKVIDTNDHRPQFSTSKYEVVILEDTAPETEILQISAVDKDEKNKLIYTLQS
                     SIDPLSLKKFRLDPATGSLYTAEKLDHEAIQQHVLTVMVRDQDVPVKRNFARIVVNVS
                     DTNDHAPWFMSSSYKGRVYESAAIGSVVLQVTALDKDKGKNAEVLYSIESGNIGNSFT
                     IDPILGSIKTAKELDRSNQVEYDLMVKAIDKGNPPMSEITSVCIFVTIADNASPKFTS
                     KEYSVEISETISIGSFVGMVTAHSQSSVVYEIKDGNIADAFDINPHSGSIITQKALDF
                     ETLPIYTLTIQGTNMAGLSTNTTVLVHLQDENDNLPVFTQAEYTGLISESASIHSVVL
                     TDRNVPLVIRATDADKESNALLVYHIVEPAVHKYFTVDSSTGAIHTVLSLDYEQTSTF
                     HFTVQVHDMGTPCLFAEYAANVTIHVIDINDCPPVFSTSLYEASLLLPTYKGVKVITV
                     NATDADSSALSQLMYSITEGNIGEKFLMDHKTGTITVQNTTQLRSRYELTVRASDGRF
                     ASLTSVKINVKESKESQLKFTQDFYSAVVKENSTEARRLAVITAIGNPINEPLFYHIL
                     NPDRRFKISRTSGVLSTTGIPFDREQQETFNVVVEVTQERKPSAVARVIVKVIVEDQN
                     DNAPVFVNLPYYAVVKVDTAVGHVIRYVTAIDRDGGRNGEVHYYLKEHHEHFQIGASG
                     EISLKKQFEPDTLNKEYLVTVVAKDGGNPAFSAEVMVPITVMNKAMPVFEKPFYSAEI
                     PENVQMHSPVVHVQANSPEGLKVFYSITDGDPFSQFTINFNTGVINVIAPLDFESHPA
                     YKLSIRATDSLTGAHAEVFVDIIVEDVNDNPPVFAQQSYATTLSEASVIGTSVVQVRA
                     TDSDSEPNRGISYHMFGNHSKSHDHFHIDSSTGLISLVRTLDFEQFQQHKIFVRAVDG
                     GMPPLSSDVVVTVDVTDLNDHPPLFDQQIYEARISEHAAHGHFVTCVKAYDEDSSDID
                     KLEYSILSGNDHKNFVIDSRTGIITLSNLRRHALKPSYTLQVSVSDGVFRSSAQVHVS
                     VIGGNLHSPIFLQNEYEVELAENAPLHTLVTEVKATDGDSGIYGHVTYHIVNDFAKDR
                     FYTNERGQIFTLEKLDRETPVEKVIPVRFMAKDTGGKVAFCTINVILTDDNDNAPQFR
                     ATKFEVNIGSNAPKGTSVIKVLASDADEGSNADMTYAIEADSEGVKENLEINRLSGII
                     TTKESLIGLENEVFTFFVRAVDNGSPPKESVVPVYVKVLPPEMRLPRFSEPFYTYTVS
                     EDVPIGTEIDLIRAEHSETVLYSLVKGNTPESNRDEFFVIDRQSGRLKLEKGLDHETT
                     KWYQFSVLARCTHDDYEVVASVDVSIQVKDANDNSPVLESSPYEAFTVENLPGGSRVI
                     QIRASDLDSGTNGQVMYSLDQSQSVEVIESFTINMETGWITTLKELDHEERDSYQIKV
                     VASDHGEKVQLSSTAIVVVTVTDVNDSPPRFTAEIYKGTVSEDDPPGGVIAILSTTDA
                     DSEEINRQVTYYITGGDPLGQFAIENIQNEWKVYVKKPLDREKRDNYLLTITATDGTF
                     SSKAIVEVKVLDANDNSPICEKTLYSDMIPEDAFPGKLIMQVSATDADIRSNAEITYT
                     LFGPGAEKFKLNPDTGELKTLAPLDREDQATYNLLVKATDGGGRFCQADIVLTLEDVN
                     DNAPQFSADPYTITVFENTEPGTLLTRVQATDVDAGLNRKVSYSLINSADGQFSINEL
                     SGIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATGTVVVSILDINDNPPVFEYREY
                     GATVSEDVLIGTEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGAIFIVENL
                     DYESSHEYYLTVEATDGGTPSLSDVVTVNVNVTDINDNTPVFSQDTYTAVISEDAVLE
                     QSVITVMADDADGPSNSHIHYSIIDGNQGSPFTIDPARGEVKVTKLLDRETISGYTLT
                     VQASDNGSPPRVTTTTVNIDVSDVNDNAPIFSRGNYSLIIQENKPVGFSVLQLAVTDR
                     DSSHNGPPFFFSIVSGNKEGAFEVNQQGALLTAAAINRKVNDHYLLHIKVADNGKPQL
                     SSLTYIDIRVIEESIYPPAILPLEIFITAFGEEYSGGVIGKIHATDQDVYDTLTYSLD
                     PQMGSLFSVSSTGGKLIAHKKLDVGQYLLNVSVTDGKFTTAADVTVHIRQVTQEMLNQ
                     TVAVRFGNLTPEEFVGDYWRNFQRALRNILGVRRSDIQIVSLQPSEPHPHLDILLFVE
                     KSGSTQVSTKQLLHKINSSVTDIEEISGVRILDVFQKLCAGLDCPWRFCDEKVSVDES
                     AMSTHSTARLSFVTPRHRRTAVCLCTGGKCPLVHHGCEDSPCPEGSECVTDPREETYS
                     CVCPGGKFGQCPGSSSVTFTGNSFVKYRLMENENKLEMKLTMRLRTYSTHAVVMYARG
                     TDYSILEIHNGRLQYKFDCGSGPGIVSVQSIQVNDGLWHAVSLEVNGNYARLVLDQVH
                     TASGTAPGTLKTLNLDSHVFFGGHIRQQGSRHGRSPQIGSGFRGCMDSIYLNGQELPL
                     NNKPRSYAHIEESVDVSPGCLLTATEDCSSSPCQNGGACHPSPTGGYYCKCSALYIGT
                     YCEVGINPCSSNPCLYGGTCIVDNGDFLCQCRGLYTGQRCQLSPYCKDEPCKNGGTCF
                     DSLDGAVCQCDSGFRGERCQSDIDECAGNPCRNGALCENTHGSYHCNCSREYRGRHCE
                     DVTPNQYVSTPWDIGLAEGIGIVVFITGIFLLVLLFIFCRKMISRRKKHQPKPEDKHL
                     GPSAAFLQRPYFDSKLNKNMYSDVPPQVPVRPISYTPSIPSDSRNNLDRNSFEGSAIP
                     EHPEFSTFNPESVHGHRKAVAVCSVAPNLPPPPPSNSPSDSDSIQKPNWDFDYDTKVV
                     DLDPCLSKKPLEEKPSQPYSARESLCEVQSLSSFQSEPCDDNESFAAPDLSKSRGYHW
                     DTSDWMPSVPLPDIQEFPNYEVIDEQTPLYSADPNAIDTDYYPGGYDIESDFPPPPED
                     FPVPDELPPLPPEFSDQFESIHPPRDMPAAGSLGSSSRSRQRFNLNQYLPNFYPADMS
                     EPQKAGPGENSARREPYAPYPPGYQRSFEASTVENMPVSMYASTASCSDVSACCEAES
                     EVMMSDYESGDDGHFEEVTIPPLDSQQHTEV"
     misc_feature    553..873
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(574..579,766..768,772..774,862..864,868..873)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    898..1197
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(919..924,1072..1074,1078..1080,1186..1188,
                     1192..1197)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1261..1509
                     /gene="FAT1"
                     /note="Cadherin repeat-like domain; Region: CA_like;
                     cl46864"
                     /db_xref="CDD:481204"
     misc_feature    1552..1818
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1573..1578,1720..1722,1726..1728,1804..1806,
                     1810..1815)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1843..2136
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1861..1866,2017..2019,2023..2025,2122..2124,
                     2128..2133)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2164..2430
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    2611..2895
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2623..2628,2782..2784,2788..2790,2881..2883,
                     2887..2892)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2920..3210
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2938..2943,3091..3093,3097..3099,3196..3198,
                     3202..3207)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3235..3525
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3253..3258,3409..3411,3415..3417,3511..3513,
                     3517..3522)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3568..3846
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3574..3579,3733..3735,3739..3741,3832..3834,
                     3838..3843)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3868..4164
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3889..3894,4051..4053,4057..4059,4150..4152,
                     4156..4161)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4189..4473
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4528..4797
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4546..4551,4693..4695,4699..4701,4783..4785,
                     4789..4794)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4822..5115
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4840..4845,5002..5004,5008..5010,5101..5103,
                     5107..5112)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5137..5415
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    5452..5724
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5473..5478,5617..5619,5623..5625,5710..5712,
                     5716..5721)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5746..6063
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5767..5772,5947..5949,5953..5955,6052..6054,
                     6058..6063)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6124..6351
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    6391..6672
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(6409..6414,6559..6561,6565..6567,6658..6660,
                     6664..6669)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6694..6963
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    7000..7278
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7018..7023,7168..7170,7174..7176,7264..7266,
                     7270..7275)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7300..7599
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7321..7326,7486..7488,7492..7494,7585..7587,
                     7591..7596)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7621..7905
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7642..7647,7801..7803,7807..7809,7891..7893,
                     7897..7902)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7927..8217
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7948..7953,8104..8106,8110..8112,8203..8205,
                     8209..8214)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8242..8523
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    8563..8856
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(8581..8586,8740..8742,8746..8748,8842..8844,
                     8848..8853)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8878..9147
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    9205..9498
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9226..9231,9394..9396,9400..9402,9484..9486,
                     9490..9495)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9535..9804
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9541..9546,9697..9699,9703..9705,9790..9792,
                     9796..9801)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9826..10119
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9847..9852,10003..10005,10009..10011,10105..10107,
                     10111..10116)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10141..10434
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10162..10167,10321..10323,10327..10329,10420..10422,
                     10426..10431)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10456..10749
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10477..10482,10636..10638,10642..10644,10735..10737,
                     10741..10746)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10774..11049
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    11122..11343
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    12001..12396
                     /gene="FAT1"
                     /note="Laminin G domain; Region: LamG; smart00282"
                     /db_xref="CDD:214598"
     misc_feature    12487..12591
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    12598..12705
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    12718..12810
                     /gene="FAT1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    12820..12930
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(12820..12822,12829..12831,12871..12873)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
ORIGIN      
        1 aggcggcggg gctgggggct aggcggggcg ctgacgtcac ctcccctccc ccacctcctc
       61 caggcgggag ggagtgggga aagaggcagt gatccgccgc agctcccagc cgcaactcct
      121 aaactcagcg gctcgctgcc cggacatgtc ctgacaaact tggtttctct tcggccctct
      181 ctctagccct cgcgcactct catttcgcct ccttttgctg ctcaagtttc ccccaggacg
      241 gaagcctccg gagatgcggc cacctgggcg gcgcgggcgg atcgcactct cgttggcgac
      301 atgctgaaga tccgagggaa gcaaagttgg tacttcatac acggcttgta acaaatattc
      361 aaatcgcgtg gcgattacgg acctgccggg actttaaagc agaacaccga ggactcggct
      421 ggacgggttc ctgggagtta agcgatgggg aggcatttgg cctcgcttct gcttttgctc
      481 ctcctccagc attttggaga cagtgatgga agccaagcac ttgaacaaac tcctgtacag
      541 ttcacacatt tccagtacaa tgtcacagtg catgaaaatt ctgcagcaaa gacctatgtt
      601 gggcatcccg taaagatggg tatttacatt acaaatccac tgtgggagtt aaggtacaaa
      661 attgtctcag gagacaatga aaacctattc aaagctgaag agtacattct tggagacttt
      721 tgctttctga gaataaggac caaaggagga aatacagcta ttcttaatag agaagtgaaa
      781 gaccattaca cgttgatagt caaagcagtt gaaaaaaata ctaatatgga agcacgaaca
      841 aaggtcaggg tacaagtgct ggatacaaat gacttgaggc cattattctc acccacctcg
      901 tacagtgttt ctttacctga aaacacagcc ctgaggacca gtattgcaag agtcagtgcc
      961 acggatgcag acataggcac caatggagaa ttttactaca gttttaaaga ccgaacagac
     1021 atgtttgcta tccaccccac cagtggcacc atagttttaa ctggtagact tgactacaca
     1081 gagaccaagt tctatgagat ggaaattctt gctgtggacc gtggcatgaa attgtacggg
     1141 agcagtggta tcagcagcat ggctaagctg acagttcacg tagagcaggc caacgagtgt
     1201 gctcctgtgt taacagcagt gacgttatca ccatcggaat tggagaagga cccaacgtat
     1261 gccatcataa ccgtggagga ctgcgatcag ggtgccaatg gggaagtcgc ttctttaagc
     1321 attgtggcag gagacctcct tcagcagttt agaacagtga ggacctctcc agggagcaaa
     1381 gagtataaac tcaaagcagt cggtgacatt gattgggaca gtcatccttt cggctacaac
     1441 ctgacactac aggcgaaaga taaaggaagt cctccccagt tctcttctgt aaaagtaatt
     1501 caggtgactt caccacggtt caaagctggg ccagtcaagt ttgaaaagga ggtttacaga
     1561 gcagaaataa gtgaatttgc tcctcccagc acacccgtgg tcacggtgaa agccacacct
     1621 agctattctc atttgaagta tgtttttaaa agtacacctg gaaaagctaa attcagttta
     1681 aatcacaaca ctggtctcat ttccatttta gaaccaatta aaagacagca agcctcccag
     1741 tttgaacttg aagtaacaac aagtgacaga aaagcctcga ccaaagtctt ggttaaagtc
     1801 ttgagtgcaa atagccatcc ccctgaattt acccagacag cctacaaagc atcttttgac
     1861 gagaacgtgc ccattggtac tacggtgatg agtgtgagtg ctatagaccc tgatgagggt
     1921 gagaacgggt atgtgacgta cagcattgca aatttgaatc atgtgccgtt tgtgattaac
     1981 catttcaccg gtgctgtgag tacttcagag aacttggact atgagctgat gccacgggtt
     2041 tatactctaa ggattcgggc atcagactgg ggcttgccat accgccggga ggttgaaatc
     2101 cttgctaccc tcactctcaa taacttgaat gacaacacac ccctgtttga gaagataaac
     2161 tgtgaaggaa caattcccag ggacctaggt gtaggggagc agataaccac tgtttctgcc
     2221 attgacgcgg atgaactgca gttggtgcgg tatcagactg aagctgggaa tgaactggat
     2281 ttgttcagct taaaccccag ctccggggta ttgtcattaa agcagtcgct catgaatggt
     2341 ttaggggcaa aggtgtcatt tcacagtctg agaattacag ctacagatgg agagaatttt
     2401 gccacaccat tatacatcaa cataactgtg gctgcccttc gcaagccagt aaacttgcac
     2461 tgcgaggaga ctggtgtggc caggatgctg gcagagaaac tcctgcaggc caataagtta
     2521 cacagtcagg gagaggttga ggatgtcttc tttgattctc actctgtcaa tgctcacaca
     2581 ccacagttta gaagtaccct tccagctggt attgaggtga aggaaaatca tcccgtgggt
     2641 tccagcataa ttttcatgaa tgctactgac ctggacactg gcttcaacgg aaaactggtc
     2701 tatgctattt ctggaggaaa tgaggatagt tgcttcatta ttgacatgga aacaggaatg
     2761 ctcaaaattt tatccccgct tgaccgtgaa acaacagaca gatataccct gaatgttacg
     2821 gtgtctgacc tcggtctgcc acagaaggct gcttggcgtc ttctggagat cagagttctg
     2881 gatgccaatg ataacccacc tgagttttta caggagaact atttcgttga agtgagtgaa
     2941 gacaaagaga taaatagtga aatcatccag gttgaagcca cagataaaga tctggggccc
     3001 aatggacatg tgacatactc tcttcttaca gacacagata aattttcaat tgacagcaca
     3061 actggagtgg tgaaaatcgt gaaccccttg gatcgtgaag aacagcacgt gcattacgta
     3121 aagattgaag ccagggatca agccagagaa gaaccgcagc tgctttccat ggtgcttctg
     3181 aaggtatcat tagaggatgt taatgacaac ccacccaagt ttattccccc taattaccgt
     3241 gtgaaagttc gagaggacct tccagaagga accataatca tgtggttaga gacctatgat
     3301 cctgatttaa gtcagtctag tcaggtgaga tacagtctta tggaccacgg agaaggaaac
     3361 tttgatgtgg ataagctcag tggagcagtt agaatcatac agcagttgga ctttgagaag
     3421 aagcaagtgt ataatctcac tgtgagggcc aaagacaaag ggaagcccat ttctctgtct
     3481 tccacttgct acattgaagt tgaagtcatc gatgtgaatg agaacttaca cccaccagtg
     3541 tttcctagct ttgtggaaaa gggtgtagtg aaagaaaatg tccctgttgg ttcatcagtg
     3601 atgaaggtat cagctcatga tgaggacaca ggaagagatg gggagatcca ctattccatt
     3661 cgagatggtt ctggtgttgg tgttttcaaa atagatgaag aaacaggtgt tatagagact
     3721 tcaggtcgac tggaccgcga gtccacctcc cattactggc taacggtcta cgcgtctgat
     3781 cagggcgtcg tgcccctttc ctcctttgta gaggtctata tagagctgga ggatgtgaac
     3841 gacaatgcac cgcagacttc agagcctgtt tattatccgg aaataatgga aaactctccc
     3901 aaggatgtgt ctgtggtcca gattgaggca tttgatccag attctagctc cgatgacaag
     3961 ttgacataca aaattacaag tggaaatcca caaggatttt tttcaataaa tcctaagaca
     4021 ggtctcatca cgactacatc caggaaacta gaccgtgagc agcaaggtga acacatatta
     4081 gaagttacag tgacagacaa tggtagtccc cccaagtcaa ccattgcaag agtaattgtg
     4141 aagatccttg acgaaaatga caacaagcct cagttcctgc agaagttcta caaaatcaga
     4201 ctcccagagc gggaaaaacc agaacgagaa agaaacacca agcgcgagcc tttatatcgt
     4261 gttatagcta cagacaaaga tgaaggtccc aatgcagaaa tctcctatag cattgaagag
     4321 ggaaatgaac atggcaaatt ttttattgag ccaaaaactg gagtggtttt gtccaagaag
     4381 ttttctggag ctggagaata tgatattctt tcaattaagg cagttgataa tggtcgcccc
     4441 caaaagtcat caaccactcg actccatatt gaatggatct ccaaacccaa accgtccccg
     4501 gagccaattt catttgaaga atcatttttt acctttactg taatggaaag cgatccagtt
     4561 gctcacatga ttggagtaat agctgttgag cctccaggca tacctctttg gtttgacatc
     4621 attggtggca actatgatag tcactttgat gtggacaagg gcactggaac catcattatt
     4681 gccaaacctc ttgatgcaga acaaaaatca aactacaatc tcacagtcga ggctacagat
     4741 ggaaccacca ctatactgac tcaggtattc atcaaagtaa tagacacaaa tgaccatcgt
     4801 cctcagtttt ctacatcaaa atatgaagtt gttattcttg aagacacagc accagaaaca
     4861 gaaattttgc aaatcagtgc tgtggataaa gatgaaaaaa acaaactaat ctacactctg
     4921 cagagcagta tcgatccatt gagtctcaag aaatttcgcc ttgatcctgc aactggctct
     4981 ctctatacag cagaaaaact tgatcatgaa gccattcagc agcatgttct cacagtcatg
     5041 gtacgagatc aagatgtccc tgtaaagcgc aactttgcac ggattgttgt taatgtcagc
     5101 gacaccaatg accacgcccc ctggttcatg agctcctcct acaaagggcg ggtttatgaa
     5161 tcagcagcta tcggctcagt tgtgttgcag gttacagctc tggacaagga caaagggaaa
     5221 aatgctgaag tgctgtactc tatcgaatca ggaaacattg gaaattcttt tacaattgat
     5281 cccatcttgg gctctataaa aactgccaaa gaattagatc gaagtaacca agtggaatat
     5341 gacttaatgg taaaagctat agataaaggc aacccaccaa tgagtgaaat cacttctgtg
     5401 tgtatctttg tcaccatcgc tgacaacgcc tctcccaagt ttacatcaaa agagtattct
     5461 gttgaaatta gtgaaactat cagcattggg agtttcgtcg gaatggttac agcccatagt
     5521 cagtcatcag tggtatatga aataaaagat ggaaatatag ctgatgcctt tgatattaat
     5581 ccacattctg gaagtatcat cactcagaaa gctttggatt ttgaaacttt gcccatttat
     5641 acattgacaa tacaaggaac taacatggct ggtttgtcta cgaatacaac cgttctagtg
     5701 catctgcagg atgaaaatga caacttgcca gtttttacgc aggcagaata tacggggctc
     5761 attagcgaat cagcttcaat tcacagtgtg gtcctaacag acaggaatgt cccattagtt
     5821 attcgagcca ctgatgctga taaagaatca aatgctttgc ttgtttatca cattgttgag
     5881 ccagctgtac acaaatattt tactgttgat tccagcactg gtgctattca cacagtacta
     5941 agtttggact atgagcagac aagtactttt cacttcactg tacaagttca tgacatggga
     6001 acaccatgtt tatttgctga atatgcagcc aacgtgacta tccatgttat tgacattaat
     6061 gactgccctc ctgtgttctc cacatcattg tatgaagcat ctcttttgtt gccaacatac
     6121 aaaggagtca aggtcattac agtaaatgct acagatgctg attcaagcgc attgtcacag
     6181 ttaatgtact ccatcaccga aggcaacatc ggggagaagt tcttaatgga ccacaagact
     6241 ggtactataa ctgtacaaaa cacaactcag ttgaggagcc gctatgagtt aactgtcagg
     6301 gcctctgatg gcagatttgc aagcttaacc tctgtgaaga ttaacgtgaa agaaagcaaa
     6361 gaaagtcagc tgaagtttac ccaagatttc tactctgcgg tagtgaaaga gaattctact
     6421 gaagccagaa gattagctgt cataactgct atcgggaatc caatcaacga acccctgttt
     6481 tatcacatcc tcaacccaga tcgcagattc aaaatcagcc gcacgtccgg agttctgtcg
     6541 accactggca taccgtttga tcgtgaacag caggagacct ttaatgtggt agtggaagtg
     6601 acacaagaac gcaagccttc agcggtggcc cgtgtcattg taaaggtcat cgtcgaagac
     6661 cagaatgata atgcaccggt gtttgtcaac ctgccttact acgccgtcgt taaagtggat
     6721 accgccgtgg gccatgttat tcgctatgtg acagccatcg acagagacgg cggcaggaac
     6781 ggggaagtgc actactacct caaggaacac cacgaacact tccaaattgg agcctcaggg
     6841 gaaatttcac tgaaaaaaca gtttgaacct gacaccttaa ataaagaata tcttgtcaca
     6901 gtggttgcaa aagatggagg aaacccagct ttttcggctg aagtcatggt tcccatcacc
     6961 gttatgaaca aagccatgcc tgtgtttgaa aagcctttct acagtgccga gattccagag
     7021 aacgtccaga tgcacagccc cgttgtccac gtacaagcca acagtccaga gggcttgaaa
     7081 gtgttctata gcatcacaga cggtgatcct ttcagccagt ttactattaa cttcaacact
     7141 ggagttatca atgtcatagc gcctctggac tttgagtccc acccagcata taaactgagc
     7201 atccgagcga ctgactcctt gaccggtgct cacgctgagg tctttgtgga cataatcgtg
     7261 gaagacgtca atgacaaccc tcccgtgttt gcccagcagt cctatgccac caccctgtcc
     7321 gaggcatctg taatcggcac atccgtggtt caagtcagag caacagattc tgactcagaa
     7381 ccaaacagag ggatttcata ccatatgttt gggaatcaca gcaagagtca tgatcatttt
     7441 cacatagaca gcagcactgg cctcatttcc ctggttagga ctttggattt tgagcagttc
     7501 cagcagcaca agatttttgt aagggctgtt gatggcggca tgcctcctct gagcagcgat
     7561 gtggttgtca cagtggatgt caccgacctc aacgatcacc caccactatt tgaccaacag
     7621 atatatgaag ccagaattag cgagcacgct gcccatgggc attttgtgac ctgtgtaaaa
     7681 gcctatgatg aggacagttc agacatagac aagttggaat attccattct gtctggcaac
     7741 gatcataaga attttgtcat tgacagcagg acggggatca tcactctctc aaacctgcgc
     7801 cggcatgccc tgaagccatc gtacaccctt caggtttctg tgtctgacgg agtttttagg
     7861 agttcagctc aggttcatgt gagtgtgatt ggaggcaatt tgcacagtcc catttttctt
     7921 cagaacgaat atgaagtgga gcttgctgaa aatgctccct tgcacaccct ggtgaccgag
     7981 gttaaagcaa ctgatgggga ttcgggtatt tacggtcacg ttacctacca cattgtaaat
     8041 gactttgcca aagacaggtt ttacacaaat gagagaggac agatctttac tttagaaaaa
     8101 cttgatcgag aaaccccagt ggaaaaagta atcccagttc gtttcatggc caaggacact
     8161 ggtggaaaag ttgctttctg caccattaac gtcatcctta cagatgacaa cgataatgca
     8221 ccacagtttc gagcaaccaa gtttgaggtg aatattggat ccaatgctcc caaagggacg
     8281 tcagtcatca aagtccttgc cagtgacgct gatgagggat ccaatgccga catgacctat
     8341 gccattgaag cagattctga aggcgttaaa gagaatttgg aaattaacag actgtctggc
     8401 ataataacta caaaagaaag cttaattggc ttagaaaatg aggtcttcac tttctttgtc
     8461 agagctgtgg ataatgggtc tccacccaaa gaatctgttg ttcccgtcta tgttaaagta
     8521 cttccaccag aaatgcggct tccaagattt tcagaaccat tttacaccta tacagtttcg
     8581 gaagacgttc ctattggaac agaaatagat ctcattcgag cagagcatag cgagactgtc
     8641 ctttacagcc tagtcaaagg gaatactcca gagagcaaca gagatgagtt ctttgtgatc
     8701 gacagacaga gtgggagact gaaactggag aagggtctgg accatgagac aactaagtgg
     8761 taccagtttt ccgtacttgc caggtgcact cacgatgact atgaggtggt ggcttctgta
     8821 gatgttagta tccaagtgaa agatgcaaat gataacagcc ctgtcttgga gtctagtcca
     8881 tatgaggcat ttactgttga aaacctgcca gggggaagca gagtcatcca gatcagggcg
     8941 tctgatctag attcaggaac caatggccaa gttatgtata gtctagatca gtcacaaagt
     9001 gtagaagtca tcgaatcttt caccattaac atggaaacag gatggattac aaccctaaag
     9061 gaacttgacc acgaagagag agacagttat cagattaagg tggttgcatc agatcatggt
     9121 gaaaaggttc agctctcctc cacagccatt gtggttgtta ctgtcaccga tgtcaacgat
     9181 agtcccccac ggttcacagc agagatttat aaagggactg tgagtgaaga tgatccacca
     9241 gggggcgtaa ttgccatcct gagtaccacg gatgctgatt ctgaagagat caacagacaa
     9301 gttacatatt acataacagg aggggatcct ttggggcagt ttgctattga aaatatacag
     9361 aatgaatgga aggtctatgt gaagaaacct ctagataggg aaaaaaggga caattatctt
     9421 ctgactatca cagcaactga tgggaccttc tcatcaaaag ctatagttga agtcaaagtc
     9481 cttgatgcaa atgacaacag tcccatttgt gaaaagactt tatattccga catgattcca
     9541 gaagatgcct ttcctgggaa attgatcatg caggtctctg ctacagatgc agatatccgt
     9601 tccaatgccg aaattactta cacattattt ggtccaggtg cagaaaaatt caaactaaat
     9661 ccagacacag gtgaactgaa aacattagcc ccccttgacc gcgaggacca ggcaacctat
     9721 aatcttctgg tcaaagccac ggatggaggg ggaagattct gtcaagctga tattgtgctc
     9781 acgttagagg atgtgaatga taatgccccc caattctctg ctgatcctta caccatcacc
     9841 gtgtttgaaa acacagagcc tggcacgctc ctgacaaggg tacaggccac ggatgtggat
     9901 gcaggactga atcggaaggt atcctactca ctgattaact ctgctgatgg acagttctcc
     9961 attaatgaat tatctggaat cattcagtta gaaaagcctt tggatagaga actacaggca
    10021 gtatacactc taactttgaa agctgtagat catggtttgc caagaaggtt gacagctacc
    10081 ggcactgttg ttgtatccat tttggatata aatgacaacc cacccgtgtt tgaataccgt
    10141 gaatatggtg ctacagtgtc tgaggatgtt ctcattggaa cagaagttct tcaagtgtat
    10201 gcagcaagta gggacattga agcaaatgca gaaatcacct actcgataat aagtggaaac
    10261 gaacatggga aattcagcat agattctaaa acaggggcca tatttatcgt tgagaatctg
    10321 gactatgaaa gctctcatga gtattacctg acggtggaag ccactgatgg gggcacacct
    10381 tcactgagtg atgttgtaac tgtgaacgtc aatgtaacag acatcaatga caatacccca
    10441 gtgttcagcc aagacaccta cacggcggtg atcagtgaag atgctgttct tgaacagtct
    10501 gtcattacag ttatggcaga tgatgccgat ggaccttcaa acagccacat ccactattca
    10561 attatagacg gcaatcaagg aagtccattt acaatcgacc ctgccagggg agaagtgaaa
    10621 gtgaccaaac ttctagaccg ggaaacaatt tcgggttaca cgctcaccgt gcaggcctcg
    10681 gacaacggca gtccacccag agtcaccacg accactgtga acatagacgt gtctgatgtc
    10741 aatgacaacg ctcccatctt ctccagggga aactacagcc tgatcatcca ggaaaataag
    10801 cccgtggggt tcagcgtgct gcagctggca gtgacggaca gggactcctc ccacaatggc
    10861 cctcccttct tcttcagcat tgtgagtgga aacaaggagg gggcatttga agtcaaccag
    10921 cagggagccc tcctgacggc agctgccata aataggaaag tgaacgatca ttacttactg
    10981 cacattaagg tggcagataa cggaaagcct cagttgtcat ctttgacata cattgacatt
    11041 agagtcattg aagagagcat ctatcctcct gcaattttgc cactagagat tttcattact
    11101 gcttttggag aggagtactc aggtggtgtc attgggaaga tccacgcgac ggaccaagac
    11161 gtgtatgaca cgttaaccta cagcctcgat ccccaaatgg gcagcctctt ctctgtctcc
    11221 agcacggggg gcaagctgat agcccacaag aagctggacg tagggcagta ccttctcaac
    11281 gtcagcgtaa cggatgggaa atttaccacc gcagctgatg tcacggtgca catcagacaa
    11341 gtgacgcagg agatgttgaa ccagaccgtg gccgtccgct ttggcaacct caccccggaa
    11401 gagttcgttg gtgactattg gcgcaacttc cagcgagctt tgcggaacat cctgggcgtg
    11461 aggaggagtg acattcagat cgttagcttg cagccctccg agcctcatcc gcacctggac
    11521 atcttgcttt ttgtagagaa atcaggtagc acccaggtct caacaaaaca acttctgcac
    11581 aagattaatt cttccgtgac ggatattgag gagatcagtg gtgtgaggat attggatgtg
    11641 ttccagaagc tttgtgcagg gctggattgc ccctggagat tctgcgacga aaaggtgtcc
    11701 gtggatgaaa gtgcgatgtc aacgcatagt acggccagac tgagctttgt gaccccgcgc
    11761 caccgtagga cagctgtgtg tctctgcaca gggggaaaat gcccacttgt ccatcatgga
    11821 tgtgaagaca gtccatgccc tgaaggatct gaatgtgtca ctgatcccag agaggagaca
    11881 tacagctgcg tctgtccagg tggcaagttt ggccagtgcc cagggagttc atccgtaaca
    11941 tttactggaa acagctttgt gaaatatcgt ctaatggaaa atgaaaacaa gttagagatg
    12001 aaactgacca tgaggctgcg aacatactct acccacgcgg ttgtcatgta cgctcgcgga
    12061 actgactaca gcatcttgga gatccacaac ggaaggctgc agtacaaatt cgactgtgga
    12121 agcggcccag gcatcgtctc tgtccagagc atccaggtca acgatgggct gtggcacgcg
    12181 gtgtctcttg aagtgaatgg aaactatgcc aggttggttc tagaccaagt ccacaccgca
    12241 tcaggcacag ccccggggac gctgaaaacc ctcaacctgg atagccatgt gttttttggt
    12301 ggccacatcc gtcagcaggg ctcacggcat ggaagaagcc cccagattgg cagtggtttc
    12361 aggggttgta tggactccat ttatctgaat gggcaggaac tccctttaaa taacaaacca
    12421 aggagctacg cacacattga agaatcggtg gacgtgtctc ctgggtgctt gttaacagct
    12481 acggaagact gctcgagcag cccatgccag aacggaggcg cctgccaccc ctcacccact
    12541 ggaggttatt actgtaaatg cagtgccttg tacataggga cctattgtga agtgggcatc
    12601 aatccgtgtt cctccaatcc ctgcctgtac ggtggcacct gcattgtgga caatggagac
    12661 ttcctttgtc aatgtagagg attatatact ggtcagaggt gccagcttag tccctactgc
    12721 aaagatgaac cctgtaaaaa tggtggaaca tgttttgaca gtttggatgg tgctgtctgt
    12781 cagtgtgact cgggttttag gggagaaagg tgtcagagtg acattgacga atgtgctggc
    12841 aacccctgcc gaaatggagc cctttgcgag aacacacacg gctcctacca ctgtaactgc
    12901 agccgtgagt acagaggaag acactgtgag gacgtcaccc caaaccaata cgtgtcgacc
    12961 ccctgggaca tcggcctggc tgagggcatc ggcatcgtgg ttttcataac gggcatcttc
    13021 ctactggtgc tgctgttcat cttctgccgc aagatgatta gtcgaaggaa gaaacaccag
    13081 cccaaacctg aggacaaaca cttgggaccc agcgcagctt tcttgcaaag accatatttt
    13141 gactcaaagc tcaataagaa catgtactcc gacgtaccac cccaggtgcc tgtccgtcct
    13201 atctcctaca ctccaagcat tccaagcgac tctagaaaca accttgaccg aaactccttc
    13261 gaaggatcgg ctatacccga gcaccccgaa ttcagcacct ttaaccccga gtctgtgcac
    13321 ggacaccgga aggccgtggc cgtctgcagc gtggccccaa acctgcctcc gccgcctcct
    13381 tcaaactctc cttctgacag tgactcaatc cagaagccga actgggactt cgactatgat
    13441 actaaagtag tggatcttga tccttgtctc tccaaaaagc cactggagga aaagccttct
    13501 cagccgtaca gtgcccggga gagcctgtgt gaagtgcagt ccctgagctc cttccagtcg
    13561 gagccgtgtg atgacaacga gtcttttgct gctcctgacc tcagcaaatc aagagggtat
    13621 cactgggata catcagattg gatgccaagt gttcctctgc cagatataca agagttcccc
    13681 aattatgagg tgattgatga gcagacgccc ctgtactcag cagatccaaa cgccatcgat
    13741 acagactatt accctggagg ctacgacatc gagagtgact ttccaccccc gccggaggac
    13801 ttccccgtgc ctgacgagct gccaccctta cctccagaat tcagtgacca gtttgaatcc
    13861 atacaccctc ccagagacat gcccgctgca gggagcctgg gctcttcatc gagaagccgg
    13921 cagaggttca acttgaatca gtatctgccc aatttctatc ctgccgatat gtctgaacct
    13981 cagaaagcag gccctggtga gaacagtgct cgcagagaac cctacgcccc ttaccctcca
    14041 gggtatcaaa ggagctttga agcctccact gtagagaaca tgcccgtgtc catgtacgcc
    14101 tccacagctt cctgctctga cgtgtctgcg tgctgtgaag ccgagtctga ggtcatgatg
    14161 agtgactacg agagtggaga tgatggccac ttcgaagagg tgacgatccc tccactcgat
    14221 tctcaacagc atacggaggt ctgacgctca gactccccgc aaagtgcctg aaccgtaatg
    14281 aacctagaga ttctgtcagt gatctcctgc attgatcttt gcagcagtgc ttaagcgctt
    14341 ttttccgtga gctgaaacgg gcatggctgc actgaatccc acaccttgtg acctgttagc
    14401 catttccagc gtcctaacct tctgtctttg ggtgaggttt acgtcggctg tgccatttct
    14461 gagcatcttt tttgtattta catttgtctg tgttaaaata ataaaatgaa aatcagtcct
    14521 actatcttgt tagcatgatt catgtattta tatagatttg attattttaa tttccctgtc
    14581 tttttttgta aattttatgt acagatttga ttttttccag ttttaactag aatttcaaga
    14641 tactttgtgc atttgttttt gaccgaattt tggtggtgtt agtgtcatta cctagcaccc
    14701 tgatttttta atataaccag ggtttcactc tgtatccttt tcaactgaag tatgacgttt
    14761 cgttaataca tttcagtata gtcattcatt tctatctgta cataggatga ggacagatcc
    14821 catacatgga catgtcttaa atgggttgct gtattttaga attgtaaaga tttttcatta
    14881 ttggaaactg taatggggac cttctgcaga ctgtttagaa ccaaaaccac catgacacag
    14941 tttttatagt gtctgtatat ttgtgatgca atggtcttgt aaaggttttt actgaaaact
    15001 accattagcc agtctttctt actgacaata aattattaat aaaata
//
LOCUS       XM_032618471           15009 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAT atypical cadherin 1 (FAT1),
            transcript variant X3, mRNA.
ACCESSION   XM_032618471
VERSION     XM_032618471.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15009
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15009
                     /gene="FAT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 125 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746777"
     CDS             444..14207
                     /gene="FAT1"
                     /codon_start=1
                     /product="protocadherin Fat 1 isoform X3"
                     /protein_id="XP_032474362.1"
                     /db_xref="GeneID:116746777"
                     /translation="MGRHLASLLLLLLLQHFGDSDGSQALEQTPVQFTHFQYNVTVHE
                     NSAAKTYVGHPVKMGIYITNPLWELRYKIVSGDNENLFKAEEYILGDFCFLRIRTKGG
                     NTAILNREVKDHYTLIVKAVEKNTNMEARTKVRVQVLDTNDLRPLFSPTSYSVSLPEN
                     TALRTSIARVSATDADIGTNGEFYYSFKDRTDMFAIHPTSGTIVLTGRLDYTETKFYE
                     MEILAVDRGMKLYGSSGISSMAKLTVHVEQANECAPVLTAVTLSPSELEKDPTYAIIT
                     VEDCDQGANGEVASLSIVAGDLLQQFRTVRTSPGSKEYKLKAVGDIDWDSHPFGYNLT
                     LQAKDKGSPPQFSSVKVIQVTSPRFKAGPVKFEKEVYRAEISEFAPPSTPVVTVKATP
                     SYSHLKYVFKSTPGKAKFSLNHNTGLISILEPIKRQQASQFELEVTTSDRKASTKVLV
                     KVLSANSHPPEFTQTAYKASFDENVPIGTTVMSVSAIDPDEGENGYVTYSIANLNHVP
                     FVINHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEILATLTLNNLNDNTP
                     LFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVRYQTEAGNELDLFSLNPSSGVLS
                     LKQSLMNGLGAKVSFHSLRITATDGENFATPLYINITVAALRKPVNLHCEETGVARML
                     AEKLLQANKLHSQGEVEDVFFDSHSVNAHTPQFRSTLPAGIEVKENHPVGSSIIFMNA
                     TDLDTGFNGKLVYAISGGNEDSCFIIDMETGMLKILSPLDRETTDRYTLNVTVSDLGL
                     PQKAAWRLLEIRVLDANDNPPEFLQENYFVEVSEDKEINSEIIQVEATDKDLGPNGHV
                     TYSLLTDTDKFSIDSTTGVVKIVNPLDREEQHVHYVKIEARDQAREEPQLLSMVLLKV
                     SLEDVNDNPPKFIPPNYRVKVREDLPEGTIIMWLETYDPDLSQSSQVRYSLMDHGEGN
                     FDVDKLSGAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYIEVEVIDVNENLHP
                     PVFPSFVEKGVVKENVPVGSSVMKVSAHDEDTGRDGEIHYSIRDGSGVGVFKIDEETG
                     VIETSGRLDRESTSHYWLTVYASDQGVVPLSSFVEVYIELEDVNDNAPQTSEPVYYPE
                     IMENSPKDVSVVQIEAFDPDSSSDDKLTYKITSGNPQGFFSINPKTGLITTTSRKLDR
                     EQQGEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQKFYKIRLPEREKPERE
                     RNTKREPLYRVIATDKDEGPNAEISYSIEEGNEHGKFFIEPKTGVVLSKKFSGAGEYD
                     ILSIKAVDNGRPQKSSTTRLHIEWISKPKPSPEPISFEESFFTFTVMESDPVAHMIGV
                     IAVEPPGIPLWFDIIGGNYDSHFDVDKGTGTIIIAKPLDAEQKSNYNLTVEATDGTTT
                     ILTQVFIKVIDTNDHRPQFSTSKYEVVILEDTAPETEILQISAVDKDEKNKLIYTLQS
                     SIDPLSLKKFRLDPATGSLYTAEKLDHEAIQQHVLTVMVRDQDVPVKRNFARIVVNVS
                     DTNDHAPWFMSSSYKGRVYESAAIGSVVLQVTALDKDKGKNAEVLYSIESGNIGNSFT
                     IDPILGSIKTAKELDRSNQVEYDLMVKAIDKGNPPMSEITSVCIFVTIADNASPKFTS
                     KEYSVEISETISIGSFVGMVTAHSQSSVVYEIKDGNIADAFDINPHSGSIITQKALDF
                     ETLPIYTLTIQGTNMAGLSTNTTVLVHLQDENDNLPVFTQAEYTGLISESASIHSVVL
                     TDRNVPLVIRATDADKESNALLVYHIVEPAVHKYFTVDSSTGAIHTVLSLDYEQTSTF
                     HFTVQVHDMGTPCLFAEYAANVTIHVIDINDCPPVFSTSLYEASLLLPTYKGVKVITV
                     NATDADSSALSQLMYSITEGNIGEKFLMDHKTGTITVQNTTQLRSRYELTVRASDGRF
                     ASLTSVKINVKESKESQLKFTQDFYSAVVKENSTEARRLAVITAIGNPINEPLFYHIL
                     NPDRRFKISRTSGVLSTTGIPFDREQQETFNVVVEVTQERKPSAVARVIVKVIVEDQN
                     DNAPVFVNLPYYAVVKVDTAVGHVIRYVTAIDRDGGRNGEVHYYLKEHHEHFQIGASG
                     EISLKKQFEPDTLNKEYLVTVVAKDGGNPAFSAEVMVPITVMNKAMPVFEKPFYSAEI
                     PENVQMHSPVVHVQANSPEGLKVFYSITDGDPFSQFTINFNTGVINVIAPLDFESHPA
                     YKLSIRATDSLTGAHAEVFVDIIVEDVNDNPPVFAQQSYATTLSEASVIGTSVVQVRA
                     TDSDSEPNRGISYHMFGNHSKSHDHFHIDSSTGLISLVRTLDFEQFQQHKIFVRAVDG
                     GMPPLSSDVVVTVDVTDLNDHPPLFDQQIYEARISEHAAHGHFVTCVKAYDEDSSDID
                     KLEYSILSGNDHKNFVIDSRTGIITLSNLRRHALKPSYTLQVSVSDGVFRSSAQVHVS
                     VIGGNLHSPIFLQNEYEVELAENAPLHTLVTEVKATDGDSGIYGHVTYHIVNDFAKDR
                     FYTNERGQIFTLEKLDRETPVEKVIPVRFMAKDTGGKVAFCTINVILTDDNDNAPQFR
                     ATKFEVNIGSNAPKGTSVIKVLASDADEGSNADMTYAIEADSEGVKENLEINRLSGII
                     TTKESLIGLENEVFTFFVRAVDNGSPPKESVVPVYVKVLPPEMRLPRFSEPFYTYTVS
                     EDVPIGTEIDLIRAEHSETVLYSLVKGNTPESNRDEFFVIDRQSGRLKLEKGLDHETT
                     KWYQFSVLARCTHDDYEVVASVDVSIQVKDANDNSPVLESSPYEAFTVENLPGGSRVI
                     QIRASDLDSGTNGQVMYSLDQSQSVEVIESFTINMETGWITTLKELDHEERDSYQIKV
                     VASDHGEKVQLSSTAIVVVTVTDVNDSPPRFTAEIYKGTVSEDDPPGGVIAILSTTDA
                     DSEEINRQVTYYITGGDPLGQFAIENIQNEWKVYVKKPLDREKRDNYLLTITATDGTF
                     SSKAIVEVKVLDANDNSPICEKTLYSDMIPEDAFPGKLIMQVSATDADIRSNAEITYT
                     LFGPGAEKFKLNPDTGELKTLAPLDREDQATYNLLVKATDGGGRFCQADIVLTLEDVN
                     DNAPQFSADPYTITVFENTEPGTLLTRVQATDVDAGLNRKVSYSLINSADGQFSINEL
                     SGIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATGTVVVSILDINDNPPVFEYREY
                     GATVSEDVLIGTEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGAIFIVENL
                     DYESSHEYYLTVEATDGGTPSLSDVVTVNVNVTDINDNTPVFSQDTYTAVISEDAVLE
                     QSVITVMADDADGPSNSHIHYSIIDGNQGSPFTIDPARGEVKVTKLLDRETISGYTLT
                     VQASDNGSPPRVTTTTVNIDVSDVNDNAPIFSRGNYSLIIQENKPVGFSVLQLAVTDR
                     DSSHNGPPFFFSIVSGNKEGAFEVNQQGALLTAAAINRKVNDHYLLHIKVADNGKPQL
                     SSLTYIDIRVIEESIYPPAILPLEIFITAFGEEYSGGVIGKIHATDQDVYDTLTYSLD
                     PQMGSLFSVSSTGGKLIAHKKLDVGQYLLNVSVTDGKFTTAADVTVHIRQVTQEMLNQ
                     TVAVRFGNLTPEEFVGDYWRNFQRALRNILGVRRSDIQIVSLQPSEPHPHLDILLFVE
                     KSGSTQVSTKQLLHKINSSVTDIEEISGVRILDVFQKLCAGLDCPWRFCDEKVSVDES
                     AMSTHSTARLSFVTPRHRRTAVCLCTGGKCPLVHHGCEDSPCPEGSECVTDPREETYS
                     CVCPGGKFGQCPGSSSVTFTGNSFVKYRLMENENKLEMKLTMRLRTYSTHAVVMYARG
                     TDYSILEIHNGRLQYKFDCGSGPGIVSVQSIQVNDGLWHAVSLEVNGNYARLVLDQVH
                     TASGTAPGTLKTLNLDSHVFFGGHIRQQGSRHGRSPQIGSGFRGCMDSIYLNGQELPL
                     NNKPRSYAHIEESVDVSPGCLLTATEDCSSSPCQNGGACHPSPTGGYYCKCSALYIGT
                     YCEVGINPCSSNPCLYGGTCIVDNGDFLCQCRGLYTGQRCQLSPYCKDEPCKNGGTCF
                     DSLDGAVCQCDSGFRGERCQSDIDECAGNPCRNGALCENTHGSYHCNCSREYRGRHCE
                     DVTPNQYVSTPWDIGLAEGIGIVVFITGIFLLVLLFIFCRKMISRRKKHQPKPEDKHL
                     GPSAAFLQRPYFDSKLNKNMYSDVPPQVPVRPISYTPSIPSDSRNNLDRNSFEGSAIP
                     EHPEFSTFNPESVHGHRKAVAVCSVAPNLPPPPPSNSPSDSDSIQKPNWDFDYDTKVV
                     DLDPCLSKKPLEEKPSQPYSARESLCEVQSLSSFQSEPCDDNGYHWDTSDWMPSVPLP
                     DIQEFPNYEVIDEQTPLYSADPNAIDTDYYPGGYDIESDFPPPPEDFPVPDELPPLPP
                     EFSDQFESIHPPRDMPAAGSLGSSSRSRQRFNLNQYLPNFYPADMSEPQKAGPGENSA
                     RREPYAPYPPGYQRSFEASTVENMPVSMYASTASCSDVSACCEAESEVMMSDYESGDD
                     GHFEEVTIPPLDSQQHTEV"
     misc_feature    552..872
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(573..578,765..767,771..773,861..863,867..872)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    897..1196
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(918..923,1071..1073,1077..1079,1185..1187,
                     1191..1196)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1260..1508
                     /gene="FAT1"
                     /note="Cadherin repeat-like domain; Region: CA_like;
                     cl46864"
                     /db_xref="CDD:481204"
     misc_feature    1551..1817
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1572..1577,1719..1721,1725..1727,1803..1805,
                     1809..1814)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1842..2135
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1860..1865,2016..2018,2022..2024,2121..2123,
                     2127..2132)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2163..2429
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    2610..2894
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2622..2627,2781..2783,2787..2789,2880..2882,
                     2886..2891)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2919..3209
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2937..2942,3090..3092,3096..3098,3195..3197,
                     3201..3206)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3234..3524
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3252..3257,3408..3410,3414..3416,3510..3512,
                     3516..3521)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3567..3845
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3573..3578,3732..3734,3738..3740,3831..3833,
                     3837..3842)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3867..4163
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3888..3893,4050..4052,4056..4058,4149..4151,
                     4155..4160)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4188..4472
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4527..4796
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4545..4550,4692..4694,4698..4700,4782..4784,
                     4788..4793)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4821..5114
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4839..4844,5001..5003,5007..5009,5100..5102,
                     5106..5111)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5136..5414
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    5451..5723
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5472..5477,5616..5618,5622..5624,5709..5711,
                     5715..5720)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5745..6062
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5766..5771,5946..5948,5952..5954,6051..6053,
                     6057..6062)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6123..6350
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    6390..6671
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(6408..6413,6558..6560,6564..6566,6657..6659,
                     6663..6668)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6693..6962
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    6999..7277
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7017..7022,7167..7169,7173..7175,7263..7265,
                     7269..7274)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7299..7598
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7320..7325,7485..7487,7491..7493,7584..7586,
                     7590..7595)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7620..7904
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7641..7646,7800..7802,7806..7808,7890..7892,
                     7896..7901)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7926..8216
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7947..7952,8103..8105,8109..8111,8202..8204,
                     8208..8213)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8241..8522
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    8562..8855
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(8580..8585,8739..8741,8745..8747,8841..8843,
                     8847..8852)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8877..9146
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    9204..9497
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9225..9230,9393..9395,9399..9401,9483..9485,
                     9489..9494)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9534..9803
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9540..9545,9696..9698,9702..9704,9789..9791,
                     9795..9800)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9825..10118
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9846..9851,10002..10004,10008..10010,10104..10106,
                     10110..10115)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10140..10433
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10161..10166,10320..10322,10326..10328,10419..10421,
                     10425..10430)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10455..10748
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10476..10481,10635..10637,10641..10643,10734..10736,
                     10740..10745)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10773..11048
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    11121..11342
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    12000..12395
                     /gene="FAT1"
                     /note="Laminin G domain; Region: LamG; smart00282"
                     /db_xref="CDD:214598"
     misc_feature    12486..12590
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    12597..12704
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    12717..12809
                     /gene="FAT1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    12819..12929
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(12819..12821,12828..12830,12870..12872)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
ORIGIN      
        1 ggcggcgggg ctgggggcta ggcggggcgc tgacgtcacc tcccctcccc cacctcctcc
       61 aggcgggagg gagtggggaa agaggcagtg atccgccgca gctcccagcc gcaactccta
      121 aactcagcgg ctcgctgccc ggacatgtcc tgacaaactt ggtttctctt cggccctctc
      181 tctagccctc gcgcactctc atttcgcctc cttttgctgc tcaagtttcc cccaggacgg
      241 aagcctccgg agatgcggcc acctgggcgg cgcgggcgga tcgcactctc gttggcgaca
      301 tgctgaagat ccgagggaag caaagttggt acttcataca cggcttgtaa caaatattca
      361 aatcgcgtgg cgattacgga cctgccggga ctttaaagca gaacaccgag gactcggctg
      421 gacgggttcc tgggagttaa gcgatgggga ggcatttggc ctcgcttctg cttttgctcc
      481 tcctccagca ttttggagac agtgatggaa gccaagcact tgaacaaact cctgtacagt
      541 tcacacattt ccagtacaat gtcacagtgc atgaaaattc tgcagcaaag acctatgttg
      601 ggcatcccgt aaagatgggt atttacatta caaatccact gtgggagtta aggtacaaaa
      661 ttgtctcagg agacaatgaa aacctattca aagctgaaga gtacattctt ggagactttt
      721 gctttctgag aataaggacc aaaggaggaa atacagctat tcttaataga gaagtgaaag
      781 accattacac gttgatagtc aaagcagttg aaaaaaatac taatatggaa gcacgaacaa
      841 aggtcagggt acaagtgctg gatacaaatg acttgaggcc attattctca cccacctcgt
      901 acagtgtttc tttacctgaa aacacagccc tgaggaccag tattgcaaga gtcagtgcca
      961 cggatgcaga cataggcacc aatggagaat tttactacag ttttaaagac cgaacagaca
     1021 tgtttgctat ccaccccacc agtggcacca tagttttaac tggtagactt gactacacag
     1081 agaccaagtt ctatgagatg gaaattcttg ctgtggaccg tggcatgaaa ttgtacggga
     1141 gcagtggtat cagcagcatg gctaagctga cagttcacgt agagcaggcc aacgagtgtg
     1201 ctcctgtgtt aacagcagtg acgttatcac catcggaatt ggagaaggac ccaacgtatg
     1261 ccatcataac cgtggaggac tgcgatcagg gtgccaatgg ggaagtcgct tctttaagca
     1321 ttgtggcagg agacctcctt cagcagttta gaacagtgag gacctctcca gggagcaaag
     1381 agtataaact caaagcagtc ggtgacattg attgggacag tcatcctttc ggctacaacc
     1441 tgacactaca ggcgaaagat aaaggaagtc ctccccagtt ctcttctgta aaagtaattc
     1501 aggtgacttc accacggttc aaagctgggc cagtcaagtt tgaaaaggag gtttacagag
     1561 cagaaataag tgaatttgct cctcccagca cacccgtggt cacggtgaaa gccacaccta
     1621 gctattctca tttgaagtat gtttttaaaa gtacacctgg aaaagctaaa ttcagtttaa
     1681 atcacaacac tggtctcatt tccattttag aaccaattaa aagacagcaa gcctcccagt
     1741 ttgaacttga agtaacaaca agtgacagaa aagcctcgac caaagtcttg gttaaagtct
     1801 tgagtgcaaa tagccatccc cctgaattta cccagacagc ctacaaagca tcttttgacg
     1861 agaacgtgcc cattggtact acggtgatga gtgtgagtgc tatagaccct gatgagggtg
     1921 agaacgggta tgtgacgtac agcattgcaa atttgaatca tgtgccgttt gtgattaacc
     1981 atttcaccgg tgctgtgagt acttcagaga acttggacta tgagctgatg ccacgggttt
     2041 atactctaag gattcgggca tcagactggg gcttgccata ccgccgggag gttgaaatcc
     2101 ttgctaccct cactctcaat aacttgaatg acaacacacc cctgtttgag aagataaact
     2161 gtgaaggaac aattcccagg gacctaggtg taggggagca gataaccact gtttctgcca
     2221 ttgacgcgga tgaactgcag ttggtgcggt atcagactga agctgggaat gaactggatt
     2281 tgttcagctt aaaccccagc tccggggtat tgtcattaaa gcagtcgctc atgaatggtt
     2341 taggggcaaa ggtgtcattt cacagtctga gaattacagc tacagatgga gagaattttg
     2401 ccacaccatt atacatcaac ataactgtgg ctgcccttcg caagccagta aacttgcact
     2461 gcgaggagac tggtgtggcc aggatgctgg cagagaaact cctgcaggcc aataagttac
     2521 acagtcaggg agaggttgag gatgtcttct ttgattctca ctctgtcaat gctcacacac
     2581 cacagtttag aagtaccctt ccagctggta ttgaggtgaa ggaaaatcat cccgtgggtt
     2641 ccagcataat tttcatgaat gctactgacc tggacactgg cttcaacgga aaactggtct
     2701 atgctatttc tggaggaaat gaggatagtt gcttcattat tgacatggaa acaggaatgc
     2761 tcaaaatttt atccccgctt gaccgtgaaa caacagacag atataccctg aatgttacgg
     2821 tgtctgacct cggtctgcca cagaaggctg cttggcgtct tctggagatc agagttctgg
     2881 atgccaatga taacccacct gagtttttac aggagaacta tttcgttgaa gtgagtgaag
     2941 acaaagagat aaatagtgaa atcatccagg ttgaagccac agataaagat ctggggccca
     3001 atggacatgt gacatactct cttcttacag acacagataa attttcaatt gacagcacaa
     3061 ctggagtggt gaaaatcgtg aaccccttgg atcgtgaaga acagcacgtg cattacgtaa
     3121 agattgaagc cagggatcaa gccagagaag aaccgcagct gctttccatg gtgcttctga
     3181 aggtatcatt agaggatgtt aatgacaacc cacccaagtt tattccccct aattaccgtg
     3241 tgaaagttcg agaggacctt ccagaaggaa ccataatcat gtggttagag acctatgatc
     3301 ctgatttaag tcagtctagt caggtgagat acagtcttat ggaccacgga gaaggaaact
     3361 ttgatgtgga taagctcagt ggagcagtta gaatcataca gcagttggac tttgagaaga
     3421 agcaagtgta taatctcact gtgagggcca aagacaaagg gaagcccatt tctctgtctt
     3481 ccacttgcta cattgaagtt gaagtcatcg atgtgaatga gaacttacac ccaccagtgt
     3541 ttcctagctt tgtggaaaag ggtgtagtga aagaaaatgt ccctgttggt tcatcagtga
     3601 tgaaggtatc agctcatgat gaggacacag gaagagatgg ggagatccac tattccattc
     3661 gagatggttc tggtgttggt gttttcaaaa tagatgaaga aacaggtgtt atagagactt
     3721 caggtcgact ggaccgcgag tccacctccc attactggct aacggtctac gcgtctgatc
     3781 agggcgtcgt gcccctttcc tcctttgtag aggtctatat agagctggag gatgtgaacg
     3841 acaatgcacc gcagacttca gagcctgttt attatccgga aataatggaa aactctccca
     3901 aggatgtgtc tgtggtccag attgaggcat ttgatccaga ttctagctcc gatgacaagt
     3961 tgacatacaa aattacaagt ggaaatccac aaggattttt ttcaataaat cctaagacag
     4021 gtctcatcac gactacatcc aggaaactag accgtgagca gcaaggtgaa cacatattag
     4081 aagttacagt gacagacaat ggtagtcccc ccaagtcaac cattgcaaga gtaattgtga
     4141 agatccttga cgaaaatgac aacaagcctc agttcctgca gaagttctac aaaatcagac
     4201 tcccagagcg ggaaaaacca gaacgagaaa gaaacaccaa gcgcgagcct ttatatcgtg
     4261 ttatagctac agacaaagat gaaggtccca atgcagaaat ctcctatagc attgaagagg
     4321 gaaatgaaca tggcaaattt tttattgagc caaaaactgg agtggttttg tccaagaagt
     4381 tttctggagc tggagaatat gatattcttt caattaaggc agttgataat ggtcgccccc
     4441 aaaagtcatc aaccactcga ctccatattg aatggatctc caaacccaaa ccgtccccgg
     4501 agccaatttc atttgaagaa tcatttttta cctttactgt aatggaaagc gatccagttg
     4561 ctcacatgat tggagtaata gctgttgagc ctccaggcat acctctttgg tttgacatca
     4621 ttggtggcaa ctatgatagt cactttgatg tggacaaggg cactggaacc atcattattg
     4681 ccaaacctct tgatgcagaa caaaaatcaa actacaatct cacagtcgag gctacagatg
     4741 gaaccaccac tatactgact caggtattca tcaaagtaat agacacaaat gaccatcgtc
     4801 ctcagttttc tacatcaaaa tatgaagttg ttattcttga agacacagca ccagaaacag
     4861 aaattttgca aatcagtgct gtggataaag atgaaaaaaa caaactaatc tacactctgc
     4921 agagcagtat cgatccattg agtctcaaga aatttcgcct tgatcctgca actggctctc
     4981 tctatacagc agaaaaactt gatcatgaag ccattcagca gcatgttctc acagtcatgg
     5041 tacgagatca agatgtccct gtaaagcgca actttgcacg gattgttgtt aatgtcagcg
     5101 acaccaatga ccacgccccc tggttcatga gctcctccta caaagggcgg gtttatgaat
     5161 cagcagctat cggctcagtt gtgttgcagg ttacagctct ggacaaggac aaagggaaaa
     5221 atgctgaagt gctgtactct atcgaatcag gaaacattgg aaattctttt acaattgatc
     5281 ccatcttggg ctctataaaa actgccaaag aattagatcg aagtaaccaa gtggaatatg
     5341 acttaatggt aaaagctata gataaaggca acccaccaat gagtgaaatc acttctgtgt
     5401 gtatctttgt caccatcgct gacaacgcct ctcccaagtt tacatcaaaa gagtattctg
     5461 ttgaaattag tgaaactatc agcattggga gtttcgtcgg aatggttaca gcccatagtc
     5521 agtcatcagt ggtatatgaa ataaaagatg gaaatatagc tgatgccttt gatattaatc
     5581 cacattctgg aagtatcatc actcagaaag ctttggattt tgaaactttg cccatttata
     5641 cattgacaat acaaggaact aacatggctg gtttgtctac gaatacaacc gttctagtgc
     5701 atctgcagga tgaaaatgac aacttgccag tttttacgca ggcagaatat acggggctca
     5761 ttagcgaatc agcttcaatt cacagtgtgg tcctaacaga caggaatgtc ccattagtta
     5821 ttcgagccac tgatgctgat aaagaatcaa atgctttgct tgtttatcac attgttgagc
     5881 cagctgtaca caaatatttt actgttgatt ccagcactgg tgctattcac acagtactaa
     5941 gtttggacta tgagcagaca agtacttttc acttcactgt acaagttcat gacatgggaa
     6001 caccatgttt atttgctgaa tatgcagcca acgtgactat ccatgttatt gacattaatg
     6061 actgccctcc tgtgttctcc acatcattgt atgaagcatc tcttttgttg ccaacataca
     6121 aaggagtcaa ggtcattaca gtaaatgcta cagatgctga ttcaagcgca ttgtcacagt
     6181 taatgtactc catcaccgaa ggcaacatcg gggagaagtt cttaatggac cacaagactg
     6241 gtactataac tgtacaaaac acaactcagt tgaggagccg ctatgagtta actgtcaggg
     6301 cctctgatgg cagatttgca agcttaacct ctgtgaagat taacgtgaaa gaaagcaaag
     6361 aaagtcagct gaagtttacc caagatttct actctgcggt agtgaaagag aattctactg
     6421 aagccagaag attagctgtc ataactgcta tcgggaatcc aatcaacgaa cccctgtttt
     6481 atcacatcct caacccagat cgcagattca aaatcagccg cacgtccgga gttctgtcga
     6541 ccactggcat accgtttgat cgtgaacagc aggagacctt taatgtggta gtggaagtga
     6601 cacaagaacg caagccttca gcggtggccc gtgtcattgt aaaggtcatc gtcgaagacc
     6661 agaatgataa tgcaccggtg tttgtcaacc tgccttacta cgccgtcgtt aaagtggata
     6721 ccgccgtggg ccatgttatt cgctatgtga cagccatcga cagagacggc ggcaggaacg
     6781 gggaagtgca ctactacctc aaggaacacc acgaacactt ccaaattgga gcctcagggg
     6841 aaatttcact gaaaaaacag tttgaacctg acaccttaaa taaagaatat cttgtcacag
     6901 tggttgcaaa agatggagga aacccagctt tttcggctga agtcatggtt cccatcaccg
     6961 ttatgaacaa agccatgcct gtgtttgaaa agcctttcta cagtgccgag attccagaga
     7021 acgtccagat gcacagcccc gttgtccacg tacaagccaa cagtccagag ggcttgaaag
     7081 tgttctatag catcacagac ggtgatcctt tcagccagtt tactattaac ttcaacactg
     7141 gagttatcaa tgtcatagcg cctctggact ttgagtccca cccagcatat aaactgagca
     7201 tccgagcgac tgactccttg accggtgctc acgctgaggt ctttgtggac ataatcgtgg
     7261 aagacgtcaa tgacaaccct cccgtgtttg cccagcagtc ctatgccacc accctgtccg
     7321 aggcatctgt aatcggcaca tccgtggttc aagtcagagc aacagattct gactcagaac
     7381 caaacagagg gatttcatac catatgtttg ggaatcacag caagagtcat gatcattttc
     7441 acatagacag cagcactggc ctcatttccc tggttaggac tttggatttt gagcagttcc
     7501 agcagcacaa gatttttgta agggctgttg atggcggcat gcctcctctg agcagcgatg
     7561 tggttgtcac agtggatgtc accgacctca acgatcaccc accactattt gaccaacaga
     7621 tatatgaagc cagaattagc gagcacgctg cccatgggca ttttgtgacc tgtgtaaaag
     7681 cctatgatga ggacagttca gacatagaca agttggaata ttccattctg tctggcaacg
     7741 atcataagaa ttttgtcatt gacagcagga cggggatcat cactctctca aacctgcgcc
     7801 ggcatgccct gaagccatcg tacacccttc aggtttctgt gtctgacgga gtttttagga
     7861 gttcagctca ggttcatgtg agtgtgattg gaggcaattt gcacagtccc atttttcttc
     7921 agaacgaata tgaagtggag cttgctgaaa atgctccctt gcacaccctg gtgaccgagg
     7981 ttaaagcaac tgatggggat tcgggtattt acggtcacgt tacctaccac attgtaaatg
     8041 actttgccaa agacaggttt tacacaaatg agagaggaca gatctttact ttagaaaaac
     8101 ttgatcgaga aaccccagtg gaaaaagtaa tcccagttcg tttcatggcc aaggacactg
     8161 gtggaaaagt tgctttctgc accattaacg tcatccttac agatgacaac gataatgcac
     8221 cacagtttcg agcaaccaag tttgaggtga atattggatc caatgctccc aaagggacgt
     8281 cagtcatcaa agtccttgcc agtgacgctg atgagggatc caatgccgac atgacctatg
     8341 ccattgaagc agattctgaa ggcgttaaag agaatttgga aattaacaga ctgtctggca
     8401 taataactac aaaagaaagc ttaattggct tagaaaatga ggtcttcact ttctttgtca
     8461 gagctgtgga taatgggtct ccacccaaag aatctgttgt tcccgtctat gttaaagtac
     8521 ttccaccaga aatgcggctt ccaagatttt cagaaccatt ttacacctat acagtttcgg
     8581 aagacgttcc tattggaaca gaaatagatc tcattcgagc agagcatagc gagactgtcc
     8641 tttacagcct agtcaaaggg aatactccag agagcaacag agatgagttc tttgtgatcg
     8701 acagacagag tgggagactg aaactggaga agggtctgga ccatgagaca actaagtggt
     8761 accagttttc cgtacttgcc aggtgcactc acgatgacta tgaggtggtg gcttctgtag
     8821 atgttagtat ccaagtgaaa gatgcaaatg ataacagccc tgtcttggag tctagtccat
     8881 atgaggcatt tactgttgaa aacctgccag ggggaagcag agtcatccag atcagggcgt
     8941 ctgatctaga ttcaggaacc aatggccaag ttatgtatag tctagatcag tcacaaagtg
     9001 tagaagtcat cgaatctttc accattaaca tggaaacagg atggattaca accctaaagg
     9061 aacttgacca cgaagagaga gacagttatc agattaaggt ggttgcatca gatcatggtg
     9121 aaaaggttca gctctcctcc acagccattg tggttgttac tgtcaccgat gtcaacgata
     9181 gtcccccacg gttcacagca gagatttata aagggactgt gagtgaagat gatccaccag
     9241 ggggcgtaat tgccatcctg agtaccacgg atgctgattc tgaagagatc aacagacaag
     9301 ttacatatta cataacagga ggggatcctt tggggcagtt tgctattgaa aatatacaga
     9361 atgaatggaa ggtctatgtg aagaaacctc tagataggga aaaaagggac aattatcttc
     9421 tgactatcac agcaactgat gggaccttct catcaaaagc tatagttgaa gtcaaagtcc
     9481 ttgatgcaaa tgacaacagt cccatttgtg aaaagacttt atattccgac atgattccag
     9541 aagatgcctt tcctgggaaa ttgatcatgc aggtctctgc tacagatgca gatatccgtt
     9601 ccaatgccga aattacttac acattatttg gtccaggtgc agaaaaattc aaactaaatc
     9661 cagacacagg tgaactgaaa acattagccc cccttgaccg cgaggaccag gcaacctata
     9721 atcttctggt caaagccacg gatggagggg gaagattctg tcaagctgat attgtgctca
     9781 cgttagagga tgtgaatgat aatgcccccc aattctctgc tgatccttac accatcaccg
     9841 tgtttgaaaa cacagagcct ggcacgctcc tgacaagggt acaggccacg gatgtggatg
     9901 caggactgaa tcggaaggta tcctactcac tgattaactc tgctgatgga cagttctcca
     9961 ttaatgaatt atctggaatc attcagttag aaaagccttt ggatagagaa ctacaggcag
    10021 tatacactct aactttgaaa gctgtagatc atggtttgcc aagaaggttg acagctaccg
    10081 gcactgttgt tgtatccatt ttggatataa atgacaaccc acccgtgttt gaataccgtg
    10141 aatatggtgc tacagtgtct gaggatgttc tcattggaac agaagttctt caagtgtatg
    10201 cagcaagtag ggacattgaa gcaaatgcag aaatcaccta ctcgataata agtggaaacg
    10261 aacatgggaa attcagcata gattctaaaa caggggccat atttatcgtt gagaatctgg
    10321 actatgaaag ctctcatgag tattacctga cggtggaagc cactgatggg ggcacacctt
    10381 cactgagtga tgttgtaact gtgaacgtca atgtaacaga catcaatgac aataccccag
    10441 tgttcagcca agacacctac acggcggtga tcagtgaaga tgctgttctt gaacagtctg
    10501 tcattacagt tatggcagat gatgccgatg gaccttcaaa cagccacatc cactattcaa
    10561 ttatagacgg caatcaagga agtccattta caatcgaccc tgccagggga gaagtgaaag
    10621 tgaccaaact tctagaccgg gaaacaattt cgggttacac gctcaccgtg caggcctcgg
    10681 acaacggcag tccacccaga gtcaccacga ccactgtgaa catagacgtg tctgatgtca
    10741 atgacaacgc tcccatcttc tccaggggaa actacagcct gatcatccag gaaaataagc
    10801 ccgtggggtt cagcgtgctg cagctggcag tgacggacag ggactcctcc cacaatggcc
    10861 ctcccttctt cttcagcatt gtgagtggaa acaaggaggg ggcatttgaa gtcaaccagc
    10921 agggagccct cctgacggca gctgccataa ataggaaagt gaacgatcat tacttactgc
    10981 acattaaggt ggcagataac ggaaagcctc agttgtcatc tttgacatac attgacatta
    11041 gagtcattga agagagcatc tatcctcctg caattttgcc actagagatt ttcattactg
    11101 cttttggaga ggagtactca ggtggtgtca ttgggaagat ccacgcgacg gaccaagacg
    11161 tgtatgacac gttaacctac agcctcgatc cccaaatggg cagcctcttc tctgtctcca
    11221 gcacgggggg caagctgata gcccacaaga agctggacgt agggcagtac cttctcaacg
    11281 tcagcgtaac ggatgggaaa tttaccaccg cagctgatgt cacggtgcac atcagacaag
    11341 tgacgcagga gatgttgaac cagaccgtgg ccgtccgctt tggcaacctc accccggaag
    11401 agttcgttgg tgactattgg cgcaacttcc agcgagcttt gcggaacatc ctgggcgtga
    11461 ggaggagtga cattcagatc gttagcttgc agccctccga gcctcatccg cacctggaca
    11521 tcttgctttt tgtagagaaa tcaggtagca cccaggtctc aacaaaacaa cttctgcaca
    11581 agattaattc ttccgtgacg gatattgagg agatcagtgg tgtgaggata ttggatgtgt
    11641 tccagaagct ttgtgcaggg ctggattgcc cctggagatt ctgcgacgaa aaggtgtccg
    11701 tggatgaaag tgcgatgtca acgcatagta cggccagact gagctttgtg accccgcgcc
    11761 accgtaggac agctgtgtgt ctctgcacag ggggaaaatg cccacttgtc catcatggat
    11821 gtgaagacag tccatgccct gaaggatctg aatgtgtcac tgatcccaga gaggagacat
    11881 acagctgcgt ctgtccaggt ggcaagtttg gccagtgccc agggagttca tccgtaacat
    11941 ttactggaaa cagctttgtg aaatatcgtc taatggaaaa tgaaaacaag ttagagatga
    12001 aactgaccat gaggctgcga acatactcta cccacgcggt tgtcatgtac gctcgcggaa
    12061 ctgactacag catcttggag atccacaacg gaaggctgca gtacaaattc gactgtggaa
    12121 gcggcccagg catcgtctct gtccagagca tccaggtcaa cgatgggctg tggcacgcgg
    12181 tgtctcttga agtgaatgga aactatgcca ggttggttct agaccaagtc cacaccgcat
    12241 caggcacagc cccggggacg ctgaaaaccc tcaacctgga tagccatgtg ttttttggtg
    12301 gccacatccg tcagcagggc tcacggcatg gaagaagccc ccagattggc agtggtttca
    12361 ggggttgtat ggactccatt tatctgaatg ggcaggaact ccctttaaat aacaaaccaa
    12421 ggagctacgc acacattgaa gaatcggtgg acgtgtctcc tgggtgcttg ttaacagcta
    12481 cggaagactg ctcgagcagc ccatgccaga acggaggcgc ctgccacccc tcacccactg
    12541 gaggttatta ctgtaaatgc agtgccttgt acatagggac ctattgtgaa gtgggcatca
    12601 atccgtgttc ctccaatccc tgcctgtacg gtggcacctg cattgtggac aatggagact
    12661 tcctttgtca atgtagagga ttatatactg gtcagaggtg ccagcttagt ccctactgca
    12721 aagatgaacc ctgtaaaaat ggtggaacat gttttgacag tttggatggt gctgtctgtc
    12781 agtgtgactc gggttttagg ggagaaaggt gtcagagtga cattgacgaa tgtgctggca
    12841 acccctgccg aaatggagcc ctttgcgaga acacacacgg ctcctaccac tgtaactgca
    12901 gccgtgagta cagaggaaga cactgtgagg acgtcacccc aaaccaatac gtgtcgaccc
    12961 cctgggacat cggcctggct gagggcatcg gcatcgtggt tttcataacg ggcatcttcc
    13021 tactggtgct gctgttcatc ttctgccgca agatgattag tcgaaggaag aaacaccagc
    13081 ccaaacctga ggacaaacac ttgggaccca gcgcagcttt cttgcaaaga ccatattttg
    13141 actcaaagct caataagaac atgtactccg acgtaccacc ccaggtgcct gtccgtccta
    13201 tctcctacac tccaagcatt ccaagcgact ctagaaacaa ccttgaccga aactccttcg
    13261 aaggatcggc tatacccgag caccccgaat tcagcacctt taaccccgag tctgtgcacg
    13321 gacaccggaa ggccgtggcc gtctgcagcg tggccccaaa cctgcctccg ccgcctcctt
    13381 caaactctcc ttctgacagt gactcaatcc agaagccgaa ctgggacttc gactatgata
    13441 ctaaagtagt ggatcttgat ccttgtctct ccaaaaagcc actggaggaa aagccttctc
    13501 agccgtacag tgcccgggag agcctgtgtg aagtgcagtc cctgagctcc ttccagtcgg
    13561 agccgtgtga tgacaacggg tatcactggg atacatcaga ttggatgcca agtgttcctc
    13621 tgccagatat acaagagttc cccaattatg aggtgattga tgagcagacg cccctgtact
    13681 cagcagatcc aaacgccatc gatacagact attaccctgg aggctacgac atcgagagtg
    13741 actttccacc cccgccggag gacttccccg tgcctgacga gctgccaccc ttacctccag
    13801 aattcagtga ccagtttgaa tccatacacc ctcccagaga catgcccgct gcagggagcc
    13861 tgggctcttc atcgagaagc cggcagaggt tcaacttgaa tcagtatctg cccaatttct
    13921 atcctgccga tatgtctgaa cctcagaaag caggccctgg tgagaacagt gctcgcagag
    13981 aaccctacgc cccttaccct ccagggtatc aaaggagctt tgaagcctcc actgtagaga
    14041 acatgcccgt gtccatgtac gcctccacag cttcctgctc tgacgtgtct gcgtgctgtg
    14101 aagccgagtc tgaggtcatg atgagtgact acgagagtgg agatgatggc cacttcgaag
    14161 aggtgacgat ccctccactc gattctcaac agcatacgga ggtctgacgc tcagactccc
    14221 cgcaaagtgc ctgaaccgta atgaacctag agattctgtc agtgatctcc tgcattgatc
    14281 tttgcagcag tgcttaagcg cttttttccg tgagctgaaa cgggcatggc tgcactgaat
    14341 cccacacctt gtgacctgtt agccatttcc agcgtcctaa ccttctgtct ttgggtgagg
    14401 tttacgtcgg ctgtgccatt tctgagcatc ttttttgtat ttacatttgt ctgtgttaaa
    14461 ataataaaat gaaaatcagt cctactatct tgttagcatg attcatgtat ttatatagat
    14521 ttgattattt taatttccct gtcttttttt gtaaatttta tgtacagatt tgattttttc
    14581 cagttttaac tagaatttca agatactttg tgcatttgtt tttgaccgaa ttttggtggt
    14641 gttagtgtca ttacctagca ccctgatttt ttaatataac cagggtttca ctctgtatcc
    14701 ttttcaactg aagtatgacg tttcgttaat acatttcagt atagtcattc atttctatct
    14761 gtacatagga tgaggacaga tcccatacat ggacatgtct taaatgggtt gctgtatttt
    14821 agaattgtaa agatttttca ttattggaaa ctgtaatggg gaccttctgc agactgttta
    14881 gaaccaaaac caccatgaca cagtttttat agtgtctgta tatttgtgat gcaatggtct
    14941 tgtaaaggtt tttactgaaa actaccatta gccagtcttt cttactgaca ataaattatt
    15001 aataaaata
//
LOCUS       XM_032618472           14817 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAT atypical cadherin 1 (FAT1),
            transcript variant X4, mRNA.
ACCESSION   XM_032618472
VERSION     XM_032618472.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14817
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..14817
                     /gene="FAT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 119 long SRA reads, 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746777"
     CDS             252..14015
                     /gene="FAT1"
                     /codon_start=1
                     /product="protocadherin Fat 1 isoform X3"
                     /protein_id="XP_032474363.1"
                     /db_xref="GeneID:116746777"
                     /translation="MGRHLASLLLLLLLQHFGDSDGSQALEQTPVQFTHFQYNVTVHE
                     NSAAKTYVGHPVKMGIYITNPLWELRYKIVSGDNENLFKAEEYILGDFCFLRIRTKGG
                     NTAILNREVKDHYTLIVKAVEKNTNMEARTKVRVQVLDTNDLRPLFSPTSYSVSLPEN
                     TALRTSIARVSATDADIGTNGEFYYSFKDRTDMFAIHPTSGTIVLTGRLDYTETKFYE
                     MEILAVDRGMKLYGSSGISSMAKLTVHVEQANECAPVLTAVTLSPSELEKDPTYAIIT
                     VEDCDQGANGEVASLSIVAGDLLQQFRTVRTSPGSKEYKLKAVGDIDWDSHPFGYNLT
                     LQAKDKGSPPQFSSVKVIQVTSPRFKAGPVKFEKEVYRAEISEFAPPSTPVVTVKATP
                     SYSHLKYVFKSTPGKAKFSLNHNTGLISILEPIKRQQASQFELEVTTSDRKASTKVLV
                     KVLSANSHPPEFTQTAYKASFDENVPIGTTVMSVSAIDPDEGENGYVTYSIANLNHVP
                     FVINHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEILATLTLNNLNDNTP
                     LFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVRYQTEAGNELDLFSLNPSSGVLS
                     LKQSLMNGLGAKVSFHSLRITATDGENFATPLYINITVAALRKPVNLHCEETGVARML
                     AEKLLQANKLHSQGEVEDVFFDSHSVNAHTPQFRSTLPAGIEVKENHPVGSSIIFMNA
                     TDLDTGFNGKLVYAISGGNEDSCFIIDMETGMLKILSPLDRETTDRYTLNVTVSDLGL
                     PQKAAWRLLEIRVLDANDNPPEFLQENYFVEVSEDKEINSEIIQVEATDKDLGPNGHV
                     TYSLLTDTDKFSIDSTTGVVKIVNPLDREEQHVHYVKIEARDQAREEPQLLSMVLLKV
                     SLEDVNDNPPKFIPPNYRVKVREDLPEGTIIMWLETYDPDLSQSSQVRYSLMDHGEGN
                     FDVDKLSGAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYIEVEVIDVNENLHP
                     PVFPSFVEKGVVKENVPVGSSVMKVSAHDEDTGRDGEIHYSIRDGSGVGVFKIDEETG
                     VIETSGRLDRESTSHYWLTVYASDQGVVPLSSFVEVYIELEDVNDNAPQTSEPVYYPE
                     IMENSPKDVSVVQIEAFDPDSSSDDKLTYKITSGNPQGFFSINPKTGLITTTSRKLDR
                     EQQGEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQKFYKIRLPEREKPERE
                     RNTKREPLYRVIATDKDEGPNAEISYSIEEGNEHGKFFIEPKTGVVLSKKFSGAGEYD
                     ILSIKAVDNGRPQKSSTTRLHIEWISKPKPSPEPISFEESFFTFTVMESDPVAHMIGV
                     IAVEPPGIPLWFDIIGGNYDSHFDVDKGTGTIIIAKPLDAEQKSNYNLTVEATDGTTT
                     ILTQVFIKVIDTNDHRPQFSTSKYEVVILEDTAPETEILQISAVDKDEKNKLIYTLQS
                     SIDPLSLKKFRLDPATGSLYTAEKLDHEAIQQHVLTVMVRDQDVPVKRNFARIVVNVS
                     DTNDHAPWFMSSSYKGRVYESAAIGSVVLQVTALDKDKGKNAEVLYSIESGNIGNSFT
                     IDPILGSIKTAKELDRSNQVEYDLMVKAIDKGNPPMSEITSVCIFVTIADNASPKFTS
                     KEYSVEISETISIGSFVGMVTAHSQSSVVYEIKDGNIADAFDINPHSGSIITQKALDF
                     ETLPIYTLTIQGTNMAGLSTNTTVLVHLQDENDNLPVFTQAEYTGLISESASIHSVVL
                     TDRNVPLVIRATDADKESNALLVYHIVEPAVHKYFTVDSSTGAIHTVLSLDYEQTSTF
                     HFTVQVHDMGTPCLFAEYAANVTIHVIDINDCPPVFSTSLYEASLLLPTYKGVKVITV
                     NATDADSSALSQLMYSITEGNIGEKFLMDHKTGTITVQNTTQLRSRYELTVRASDGRF
                     ASLTSVKINVKESKESQLKFTQDFYSAVVKENSTEARRLAVITAIGNPINEPLFYHIL
                     NPDRRFKISRTSGVLSTTGIPFDREQQETFNVVVEVTQERKPSAVARVIVKVIVEDQN
                     DNAPVFVNLPYYAVVKVDTAVGHVIRYVTAIDRDGGRNGEVHYYLKEHHEHFQIGASG
                     EISLKKQFEPDTLNKEYLVTVVAKDGGNPAFSAEVMVPITVMNKAMPVFEKPFYSAEI
                     PENVQMHSPVVHVQANSPEGLKVFYSITDGDPFSQFTINFNTGVINVIAPLDFESHPA
                     YKLSIRATDSLTGAHAEVFVDIIVEDVNDNPPVFAQQSYATTLSEASVIGTSVVQVRA
                     TDSDSEPNRGISYHMFGNHSKSHDHFHIDSSTGLISLVRTLDFEQFQQHKIFVRAVDG
                     GMPPLSSDVVVTVDVTDLNDHPPLFDQQIYEARISEHAAHGHFVTCVKAYDEDSSDID
                     KLEYSILSGNDHKNFVIDSRTGIITLSNLRRHALKPSYTLQVSVSDGVFRSSAQVHVS
                     VIGGNLHSPIFLQNEYEVELAENAPLHTLVTEVKATDGDSGIYGHVTYHIVNDFAKDR
                     FYTNERGQIFTLEKLDRETPVEKVIPVRFMAKDTGGKVAFCTINVILTDDNDNAPQFR
                     ATKFEVNIGSNAPKGTSVIKVLASDADEGSNADMTYAIEADSEGVKENLEINRLSGII
                     TTKESLIGLENEVFTFFVRAVDNGSPPKESVVPVYVKVLPPEMRLPRFSEPFYTYTVS
                     EDVPIGTEIDLIRAEHSETVLYSLVKGNTPESNRDEFFVIDRQSGRLKLEKGLDHETT
                     KWYQFSVLARCTHDDYEVVASVDVSIQVKDANDNSPVLESSPYEAFTVENLPGGSRVI
                     QIRASDLDSGTNGQVMYSLDQSQSVEVIESFTINMETGWITTLKELDHEERDSYQIKV
                     VASDHGEKVQLSSTAIVVVTVTDVNDSPPRFTAEIYKGTVSEDDPPGGVIAILSTTDA
                     DSEEINRQVTYYITGGDPLGQFAIENIQNEWKVYVKKPLDREKRDNYLLTITATDGTF
                     SSKAIVEVKVLDANDNSPICEKTLYSDMIPEDAFPGKLIMQVSATDADIRSNAEITYT
                     LFGPGAEKFKLNPDTGELKTLAPLDREDQATYNLLVKATDGGGRFCQADIVLTLEDVN
                     DNAPQFSADPYTITVFENTEPGTLLTRVQATDVDAGLNRKVSYSLINSADGQFSINEL
                     SGIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATGTVVVSILDINDNPPVFEYREY
                     GATVSEDVLIGTEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGAIFIVENL
                     DYESSHEYYLTVEATDGGTPSLSDVVTVNVNVTDINDNTPVFSQDTYTAVISEDAVLE
                     QSVITVMADDADGPSNSHIHYSIIDGNQGSPFTIDPARGEVKVTKLLDRETISGYTLT
                     VQASDNGSPPRVTTTTVNIDVSDVNDNAPIFSRGNYSLIIQENKPVGFSVLQLAVTDR
                     DSSHNGPPFFFSIVSGNKEGAFEVNQQGALLTAAAINRKVNDHYLLHIKVADNGKPQL
                     SSLTYIDIRVIEESIYPPAILPLEIFITAFGEEYSGGVIGKIHATDQDVYDTLTYSLD
                     PQMGSLFSVSSTGGKLIAHKKLDVGQYLLNVSVTDGKFTTAADVTVHIRQVTQEMLNQ
                     TVAVRFGNLTPEEFVGDYWRNFQRALRNILGVRRSDIQIVSLQPSEPHPHLDILLFVE
                     KSGSTQVSTKQLLHKINSSVTDIEEISGVRILDVFQKLCAGLDCPWRFCDEKVSVDES
                     AMSTHSTARLSFVTPRHRRTAVCLCTGGKCPLVHHGCEDSPCPEGSECVTDPREETYS
                     CVCPGGKFGQCPGSSSVTFTGNSFVKYRLMENENKLEMKLTMRLRTYSTHAVVMYARG
                     TDYSILEIHNGRLQYKFDCGSGPGIVSVQSIQVNDGLWHAVSLEVNGNYARLVLDQVH
                     TASGTAPGTLKTLNLDSHVFFGGHIRQQGSRHGRSPQIGSGFRGCMDSIYLNGQELPL
                     NNKPRSYAHIEESVDVSPGCLLTATEDCSSSPCQNGGACHPSPTGGYYCKCSALYIGT
                     YCEVGINPCSSNPCLYGGTCIVDNGDFLCQCRGLYTGQRCQLSPYCKDEPCKNGGTCF
                     DSLDGAVCQCDSGFRGERCQSDIDECAGNPCRNGALCENTHGSYHCNCSREYRGRHCE
                     DVTPNQYVSTPWDIGLAEGIGIVVFITGIFLLVLLFIFCRKMISRRKKHQPKPEDKHL
                     GPSAAFLQRPYFDSKLNKNMYSDVPPQVPVRPISYTPSIPSDSRNNLDRNSFEGSAIP
                     EHPEFSTFNPESVHGHRKAVAVCSVAPNLPPPPPSNSPSDSDSIQKPNWDFDYDTKVV
                     DLDPCLSKKPLEEKPSQPYSARESLCEVQSLSSFQSEPCDDNGYHWDTSDWMPSVPLP
                     DIQEFPNYEVIDEQTPLYSADPNAIDTDYYPGGYDIESDFPPPPEDFPVPDELPPLPP
                     EFSDQFESIHPPRDMPAAGSLGSSSRSRQRFNLNQYLPNFYPADMSEPQKAGPGENSA
                     RREPYAPYPPGYQRSFEASTVENMPVSMYASTASCSDVSACCEAESEVMMSDYESGDD
                     GHFEEVTIPPLDSQQHTEV"
     misc_feature    360..680
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(381..386,573..575,579..581,669..671,675..680)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    705..1004
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(726..731,879..881,885..887,993..995,999..1004)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1068..1316
                     /gene="FAT1"
                     /note="Cadherin repeat-like domain; Region: CA_like;
                     cl46864"
                     /db_xref="CDD:481204"
     misc_feature    1359..1625
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1380..1385,1527..1529,1533..1535,1611..1613,
                     1617..1622)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1650..1943
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1668..1673,1824..1826,1830..1832,1929..1931,
                     1935..1940)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1971..2237
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    2418..2702
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2430..2435,2589..2591,2595..2597,2688..2690,
                     2694..2699)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2727..3017
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2745..2750,2898..2900,2904..2906,3003..3005,
                     3009..3014)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3042..3332
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3060..3065,3216..3218,3222..3224,3318..3320,
                     3324..3329)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3375..3653
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3381..3386,3540..3542,3546..3548,3639..3641,
                     3645..3650)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3675..3971
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3696..3701,3858..3860,3864..3866,3957..3959,
                     3963..3968)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3996..4280
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4335..4604
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4353..4358,4500..4502,4506..4508,4590..4592,
                     4596..4601)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4629..4922
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4647..4652,4809..4811,4815..4817,4908..4910,
                     4914..4919)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4944..5222
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    5259..5531
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5280..5285,5424..5426,5430..5432,5517..5519,
                     5523..5528)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5553..5870
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5574..5579,5754..5756,5760..5762,5859..5861,
                     5865..5870)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5931..6158
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    6198..6479
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(6216..6221,6366..6368,6372..6374,6465..6467,
                     6471..6476)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6501..6770
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    6807..7085
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(6825..6830,6975..6977,6981..6983,7071..7073,
                     7077..7082)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7107..7406
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7128..7133,7293..7295,7299..7301,7392..7394,
                     7398..7403)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7428..7712
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7449..7454,7608..7610,7614..7616,7698..7700,
                     7704..7709)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7734..8024
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7755..7760,7911..7913,7917..7919,8010..8012,
                     8016..8021)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8049..8330
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    8370..8663
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(8388..8393,8547..8549,8553..8555,8649..8651,
                     8655..8660)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8685..8954
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    9012..9305
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9033..9038,9201..9203,9207..9209,9291..9293,
                     9297..9302)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9342..9611
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9348..9353,9504..9506,9510..9512,9597..9599,
                     9603..9608)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9633..9926
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9654..9659,9810..9812,9816..9818,9912..9914,
                     9918..9923)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9948..10241
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9969..9974,10128..10130,10134..10136,10227..10229,
                     10233..10238)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10263..10556
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10284..10289,10443..10445,10449..10451,10542..10544,
                     10548..10553)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10581..10856
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    10929..11150
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    11808..12203
                     /gene="FAT1"
                     /note="Laminin G domain; Region: LamG; smart00282"
                     /db_xref="CDD:214598"
     misc_feature    12294..12398
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    12405..12512
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    12525..12617
                     /gene="FAT1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    12627..12737
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(12627..12629,12636..12638,12678..12680)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
ORIGIN      
        1 gggtgcgtga gacgccgggg ctgcaccggc cggacttgga gtggggctcg caggtggcgg
       61 ggcgctgcct cagagtgggg cgcaaggaaa gcgagggcgg gccgcagata ccatgcggcc
      121 ctgcggagcc agtgaggccc cggaccgacc cggaccccgc tcgggggcgc gctgaggcgg
      181 cgaggtgcgc gcccccgaga gcgccgccgc cgccgcttcg ggctaacttt gctgttcctg
      241 ggagttaagc gatggggagg catttggcct cgcttctgct tttgctcctc ctccagcatt
      301 ttggagacag tgatggaagc caagcacttg aacaaactcc tgtacagttc acacatttcc
      361 agtacaatgt cacagtgcat gaaaattctg cagcaaagac ctatgttggg catcccgtaa
      421 agatgggtat ttacattaca aatccactgt gggagttaag gtacaaaatt gtctcaggag
      481 acaatgaaaa cctattcaaa gctgaagagt acattcttgg agacttttgc tttctgagaa
      541 taaggaccaa aggaggaaat acagctattc ttaatagaga agtgaaagac cattacacgt
      601 tgatagtcaa agcagttgaa aaaaatacta atatggaagc acgaacaaag gtcagggtac
      661 aagtgctgga tacaaatgac ttgaggccat tattctcacc cacctcgtac agtgtttctt
      721 tacctgaaaa cacagccctg aggaccagta ttgcaagagt cagtgccacg gatgcagaca
      781 taggcaccaa tggagaattt tactacagtt ttaaagaccg aacagacatg tttgctatcc
      841 accccaccag tggcaccata gttttaactg gtagacttga ctacacagag accaagttct
      901 atgagatgga aattcttgct gtggaccgtg gcatgaaatt gtacgggagc agtggtatca
      961 gcagcatggc taagctgaca gttcacgtag agcaggccaa cgagtgtgct cctgtgttaa
     1021 cagcagtgac gttatcacca tcggaattgg agaaggaccc aacgtatgcc atcataaccg
     1081 tggaggactg cgatcagggt gccaatgggg aagtcgcttc tttaagcatt gtggcaggag
     1141 acctccttca gcagtttaga acagtgagga cctctccagg gagcaaagag tataaactca
     1201 aagcagtcgg tgacattgat tgggacagtc atcctttcgg ctacaacctg acactacagg
     1261 cgaaagataa aggaagtcct ccccagttct cttctgtaaa agtaattcag gtgacttcac
     1321 cacggttcaa agctgggcca gtcaagtttg aaaaggaggt ttacagagca gaaataagtg
     1381 aatttgctcc tcccagcaca cccgtggtca cggtgaaagc cacacctagc tattctcatt
     1441 tgaagtatgt ttttaaaagt acacctggaa aagctaaatt cagtttaaat cacaacactg
     1501 gtctcatttc cattttagaa ccaattaaaa gacagcaagc ctcccagttt gaacttgaag
     1561 taacaacaag tgacagaaaa gcctcgacca aagtcttggt taaagtcttg agtgcaaata
     1621 gccatccccc tgaatttacc cagacagcct acaaagcatc ttttgacgag aacgtgccca
     1681 ttggtactac ggtgatgagt gtgagtgcta tagaccctga tgagggtgag aacgggtatg
     1741 tgacgtacag cattgcaaat ttgaatcatg tgccgtttgt gattaaccat ttcaccggtg
     1801 ctgtgagtac ttcagagaac ttggactatg agctgatgcc acgggtttat actctaagga
     1861 ttcgggcatc agactggggc ttgccatacc gccgggaggt tgaaatcctt gctaccctca
     1921 ctctcaataa cttgaatgac aacacacccc tgtttgagaa gataaactgt gaaggaacaa
     1981 ttcccaggga cctaggtgta ggggagcaga taaccactgt ttctgccatt gacgcggatg
     2041 aactgcagtt ggtgcggtat cagactgaag ctgggaatga actggatttg ttcagcttaa
     2101 accccagctc cggggtattg tcattaaagc agtcgctcat gaatggttta ggggcaaagg
     2161 tgtcatttca cagtctgaga attacagcta cagatggaga gaattttgcc acaccattat
     2221 acatcaacat aactgtggct gcccttcgca agccagtaaa cttgcactgc gaggagactg
     2281 gtgtggccag gatgctggca gagaaactcc tgcaggccaa taagttacac agtcagggag
     2341 aggttgagga tgtcttcttt gattctcact ctgtcaatgc tcacacacca cagtttagaa
     2401 gtacccttcc agctggtatt gaggtgaagg aaaatcatcc cgtgggttcc agcataattt
     2461 tcatgaatgc tactgacctg gacactggct tcaacggaaa actggtctat gctatttctg
     2521 gaggaaatga ggatagttgc ttcattattg acatggaaac aggaatgctc aaaattttat
     2581 ccccgcttga ccgtgaaaca acagacagat ataccctgaa tgttacggtg tctgacctcg
     2641 gtctgccaca gaaggctgct tggcgtcttc tggagatcag agttctggat gccaatgata
     2701 acccacctga gtttttacag gagaactatt tcgttgaagt gagtgaagac aaagagataa
     2761 atagtgaaat catccaggtt gaagccacag ataaagatct ggggcccaat ggacatgtga
     2821 catactctct tcttacagac acagataaat tttcaattga cagcacaact ggagtggtga
     2881 aaatcgtgaa ccccttggat cgtgaagaac agcacgtgca ttacgtaaag attgaagcca
     2941 gggatcaagc cagagaagaa ccgcagctgc tttccatggt gcttctgaag gtatcattag
     3001 aggatgttaa tgacaaccca cccaagttta ttccccctaa ttaccgtgtg aaagttcgag
     3061 aggaccttcc agaaggaacc ataatcatgt ggttagagac ctatgatcct gatttaagtc
     3121 agtctagtca ggtgagatac agtcttatgg accacggaga aggaaacttt gatgtggata
     3181 agctcagtgg agcagttaga atcatacagc agttggactt tgagaagaag caagtgtata
     3241 atctcactgt gagggccaaa gacaaaggga agcccatttc tctgtcttcc acttgctaca
     3301 ttgaagttga agtcatcgat gtgaatgaga acttacaccc accagtgttt cctagctttg
     3361 tggaaaaggg tgtagtgaaa gaaaatgtcc ctgttggttc atcagtgatg aaggtatcag
     3421 ctcatgatga ggacacagga agagatgggg agatccacta ttccattcga gatggttctg
     3481 gtgttggtgt tttcaaaata gatgaagaaa caggtgttat agagacttca ggtcgactgg
     3541 accgcgagtc cacctcccat tactggctaa cggtctacgc gtctgatcag ggcgtcgtgc
     3601 ccctttcctc ctttgtagag gtctatatag agctggagga tgtgaacgac aatgcaccgc
     3661 agacttcaga gcctgtttat tatccggaaa taatggaaaa ctctcccaag gatgtgtctg
     3721 tggtccagat tgaggcattt gatccagatt ctagctccga tgacaagttg acatacaaaa
     3781 ttacaagtgg aaatccacaa ggattttttt caataaatcc taagacaggt ctcatcacga
     3841 ctacatccag gaaactagac cgtgagcagc aaggtgaaca catattagaa gttacagtga
     3901 cagacaatgg tagtcccccc aagtcaacca ttgcaagagt aattgtgaag atccttgacg
     3961 aaaatgacaa caagcctcag ttcctgcaga agttctacaa aatcagactc ccagagcggg
     4021 aaaaaccaga acgagaaaga aacaccaagc gcgagccttt atatcgtgtt atagctacag
     4081 acaaagatga aggtcccaat gcagaaatct cctatagcat tgaagaggga aatgaacatg
     4141 gcaaattttt tattgagcca aaaactggag tggttttgtc caagaagttt tctggagctg
     4201 gagaatatga tattctttca attaaggcag ttgataatgg tcgcccccaa aagtcatcaa
     4261 ccactcgact ccatattgaa tggatctcca aacccaaacc gtccccggag ccaatttcat
     4321 ttgaagaatc attttttacc tttactgtaa tggaaagcga tccagttgct cacatgattg
     4381 gagtaatagc tgttgagcct ccaggcatac ctctttggtt tgacatcatt ggtggcaact
     4441 atgatagtca ctttgatgtg gacaagggca ctggaaccat cattattgcc aaacctcttg
     4501 atgcagaaca aaaatcaaac tacaatctca cagtcgaggc tacagatgga accaccacta
     4561 tactgactca ggtattcatc aaagtaatag acacaaatga ccatcgtcct cagttttcta
     4621 catcaaaata tgaagttgtt attcttgaag acacagcacc agaaacagaa attttgcaaa
     4681 tcagtgctgt ggataaagat gaaaaaaaca aactaatcta cactctgcag agcagtatcg
     4741 atccattgag tctcaagaaa tttcgccttg atcctgcaac tggctctctc tatacagcag
     4801 aaaaacttga tcatgaagcc attcagcagc atgttctcac agtcatggta cgagatcaag
     4861 atgtccctgt aaagcgcaac tttgcacgga ttgttgttaa tgtcagcgac accaatgacc
     4921 acgccccctg gttcatgagc tcctcctaca aagggcgggt ttatgaatca gcagctatcg
     4981 gctcagttgt gttgcaggtt acagctctgg acaaggacaa agggaaaaat gctgaagtgc
     5041 tgtactctat cgaatcagga aacattggaa attcttttac aattgatccc atcttgggct
     5101 ctataaaaac tgccaaagaa ttagatcgaa gtaaccaagt ggaatatgac ttaatggtaa
     5161 aagctataga taaaggcaac ccaccaatga gtgaaatcac ttctgtgtgt atctttgtca
     5221 ccatcgctga caacgcctct cccaagttta catcaaaaga gtattctgtt gaaattagtg
     5281 aaactatcag cattgggagt ttcgtcggaa tggttacagc ccatagtcag tcatcagtgg
     5341 tatatgaaat aaaagatgga aatatagctg atgcctttga tattaatcca cattctggaa
     5401 gtatcatcac tcagaaagct ttggattttg aaactttgcc catttataca ttgacaatac
     5461 aaggaactaa catggctggt ttgtctacga atacaaccgt tctagtgcat ctgcaggatg
     5521 aaaatgacaa cttgccagtt tttacgcagg cagaatatac ggggctcatt agcgaatcag
     5581 cttcaattca cagtgtggtc ctaacagaca ggaatgtccc attagttatt cgagccactg
     5641 atgctgataa agaatcaaat gctttgcttg tttatcacat tgttgagcca gctgtacaca
     5701 aatattttac tgttgattcc agcactggtg ctattcacac agtactaagt ttggactatg
     5761 agcagacaag tacttttcac ttcactgtac aagttcatga catgggaaca ccatgtttat
     5821 ttgctgaata tgcagccaac gtgactatcc atgttattga cattaatgac tgccctcctg
     5881 tgttctccac atcattgtat gaagcatctc ttttgttgcc aacatacaaa ggagtcaagg
     5941 tcattacagt aaatgctaca gatgctgatt caagcgcatt gtcacagtta atgtactcca
     6001 tcaccgaagg caacatcggg gagaagttct taatggacca caagactggt actataactg
     6061 tacaaaacac aactcagttg aggagccgct atgagttaac tgtcagggcc tctgatggca
     6121 gatttgcaag cttaacctct gtgaagatta acgtgaaaga aagcaaagaa agtcagctga
     6181 agtttaccca agatttctac tctgcggtag tgaaagagaa ttctactgaa gccagaagat
     6241 tagctgtcat aactgctatc gggaatccaa tcaacgaacc cctgttttat cacatcctca
     6301 acccagatcg cagattcaaa atcagccgca cgtccggagt tctgtcgacc actggcatac
     6361 cgtttgatcg tgaacagcag gagaccttta atgtggtagt ggaagtgaca caagaacgca
     6421 agccttcagc ggtggcccgt gtcattgtaa aggtcatcgt cgaagaccag aatgataatg
     6481 caccggtgtt tgtcaacctg ccttactacg ccgtcgttaa agtggatacc gccgtgggcc
     6541 atgttattcg ctatgtgaca gccatcgaca gagacggcgg caggaacggg gaagtgcact
     6601 actacctcaa ggaacaccac gaacacttcc aaattggagc ctcaggggaa atttcactga
     6661 aaaaacagtt tgaacctgac accttaaata aagaatatct tgtcacagtg gttgcaaaag
     6721 atggaggaaa cccagctttt tcggctgaag tcatggttcc catcaccgtt atgaacaaag
     6781 ccatgcctgt gtttgaaaag cctttctaca gtgccgagat tccagagaac gtccagatgc
     6841 acagccccgt tgtccacgta caagccaaca gtccagaggg cttgaaagtg ttctatagca
     6901 tcacagacgg tgatcctttc agccagttta ctattaactt caacactgga gttatcaatg
     6961 tcatagcgcc tctggacttt gagtcccacc cagcatataa actgagcatc cgagcgactg
     7021 actccttgac cggtgctcac gctgaggtct ttgtggacat aatcgtggaa gacgtcaatg
     7081 acaaccctcc cgtgtttgcc cagcagtcct atgccaccac cctgtccgag gcatctgtaa
     7141 tcggcacatc cgtggttcaa gtcagagcaa cagattctga ctcagaacca aacagaggga
     7201 tttcatacca tatgtttggg aatcacagca agagtcatga tcattttcac atagacagca
     7261 gcactggcct catttccctg gttaggactt tggattttga gcagttccag cagcacaaga
     7321 tttttgtaag ggctgttgat ggcggcatgc ctcctctgag cagcgatgtg gttgtcacag
     7381 tggatgtcac cgacctcaac gatcacccac cactatttga ccaacagata tatgaagcca
     7441 gaattagcga gcacgctgcc catgggcatt ttgtgacctg tgtaaaagcc tatgatgagg
     7501 acagttcaga catagacaag ttggaatatt ccattctgtc tggcaacgat cataagaatt
     7561 ttgtcattga cagcaggacg gggatcatca ctctctcaaa cctgcgccgg catgccctga
     7621 agccatcgta cacccttcag gtttctgtgt ctgacggagt ttttaggagt tcagctcagg
     7681 ttcatgtgag tgtgattgga ggcaatttgc acagtcccat ttttcttcag aacgaatatg
     7741 aagtggagct tgctgaaaat gctcccttgc acaccctggt gaccgaggtt aaagcaactg
     7801 atggggattc gggtatttac ggtcacgtta cctaccacat tgtaaatgac tttgccaaag
     7861 acaggtttta cacaaatgag agaggacaga tctttacttt agaaaaactt gatcgagaaa
     7921 ccccagtgga aaaagtaatc ccagttcgtt tcatggccaa ggacactggt ggaaaagttg
     7981 ctttctgcac cattaacgtc atccttacag atgacaacga taatgcacca cagtttcgag
     8041 caaccaagtt tgaggtgaat attggatcca atgctcccaa agggacgtca gtcatcaaag
     8101 tccttgccag tgacgctgat gagggatcca atgccgacat gacctatgcc attgaagcag
     8161 attctgaagg cgttaaagag aatttggaaa ttaacagact gtctggcata ataactacaa
     8221 aagaaagctt aattggctta gaaaatgagg tcttcacttt ctttgtcaga gctgtggata
     8281 atgggtctcc acccaaagaa tctgttgttc ccgtctatgt taaagtactt ccaccagaaa
     8341 tgcggcttcc aagattttca gaaccatttt acacctatac agtttcggaa gacgttccta
     8401 ttggaacaga aatagatctc attcgagcag agcatagcga gactgtcctt tacagcctag
     8461 tcaaagggaa tactccagag agcaacagag atgagttctt tgtgatcgac agacagagtg
     8521 ggagactgaa actggagaag ggtctggacc atgagacaac taagtggtac cagttttccg
     8581 tacttgccag gtgcactcac gatgactatg aggtggtggc ttctgtagat gttagtatcc
     8641 aagtgaaaga tgcaaatgat aacagccctg tcttggagtc tagtccatat gaggcattta
     8701 ctgttgaaaa cctgccaggg ggaagcagag tcatccagat cagggcgtct gatctagatt
     8761 caggaaccaa tggccaagtt atgtatagtc tagatcagtc acaaagtgta gaagtcatcg
     8821 aatctttcac cattaacatg gaaacaggat ggattacaac cctaaaggaa cttgaccacg
     8881 aagagagaga cagttatcag attaaggtgg ttgcatcaga tcatggtgaa aaggttcagc
     8941 tctcctccac agccattgtg gttgttactg tcaccgatgt caacgatagt cccccacggt
     9001 tcacagcaga gatttataaa gggactgtga gtgaagatga tccaccaggg ggcgtaattg
     9061 ccatcctgag taccacggat gctgattctg aagagatcaa cagacaagtt acatattaca
     9121 taacaggagg ggatcctttg gggcagtttg ctattgaaaa tatacagaat gaatggaagg
     9181 tctatgtgaa gaaacctcta gatagggaaa aaagggacaa ttatcttctg actatcacag
     9241 caactgatgg gaccttctca tcaaaagcta tagttgaagt caaagtcctt gatgcaaatg
     9301 acaacagtcc catttgtgaa aagactttat attccgacat gattccagaa gatgcctttc
     9361 ctgggaaatt gatcatgcag gtctctgcta cagatgcaga tatccgttcc aatgccgaaa
     9421 ttacttacac attatttggt ccaggtgcag aaaaattcaa actaaatcca gacacaggtg
     9481 aactgaaaac attagccccc cttgaccgcg aggaccaggc aacctataat cttctggtca
     9541 aagccacgga tggaggggga agattctgtc aagctgatat tgtgctcacg ttagaggatg
     9601 tgaatgataa tgccccccaa ttctctgctg atccttacac catcaccgtg tttgaaaaca
     9661 cagagcctgg cacgctcctg acaagggtac aggccacgga tgtggatgca ggactgaatc
     9721 ggaaggtatc ctactcactg attaactctg ctgatggaca gttctccatt aatgaattat
     9781 ctggaatcat tcagttagaa aagcctttgg atagagaact acaggcagta tacactctaa
     9841 ctttgaaagc tgtagatcat ggtttgccaa gaaggttgac agctaccggc actgttgttg
     9901 tatccatttt ggatataaat gacaacccac ccgtgtttga ataccgtgaa tatggtgcta
     9961 cagtgtctga ggatgttctc attggaacag aagttcttca agtgtatgca gcaagtaggg
    10021 acattgaagc aaatgcagaa atcacctact cgataataag tggaaacgaa catgggaaat
    10081 tcagcataga ttctaaaaca ggggccatat ttatcgttga gaatctggac tatgaaagct
    10141 ctcatgagta ttacctgacg gtggaagcca ctgatggggg cacaccttca ctgagtgatg
    10201 ttgtaactgt gaacgtcaat gtaacagaca tcaatgacaa taccccagtg ttcagccaag
    10261 acacctacac ggcggtgatc agtgaagatg ctgttcttga acagtctgtc attacagtta
    10321 tggcagatga tgccgatgga ccttcaaaca gccacatcca ctattcaatt atagacggca
    10381 atcaaggaag tccatttaca atcgaccctg ccaggggaga agtgaaagtg accaaacttc
    10441 tagaccggga aacaatttcg ggttacacgc tcaccgtgca ggcctcggac aacggcagtc
    10501 cacccagagt caccacgacc actgtgaaca tagacgtgtc tgatgtcaat gacaacgctc
    10561 ccatcttctc caggggaaac tacagcctga tcatccagga aaataagccc gtggggttca
    10621 gcgtgctgca gctggcagtg acggacaggg actcctccca caatggccct cccttcttct
    10681 tcagcattgt gagtggaaac aaggaggggg catttgaagt caaccagcag ggagccctcc
    10741 tgacggcagc tgccataaat aggaaagtga acgatcatta cttactgcac attaaggtgg
    10801 cagataacgg aaagcctcag ttgtcatctt tgacatacat tgacattaga gtcattgaag
    10861 agagcatcta tcctcctgca attttgccac tagagatttt cattactgct tttggagagg
    10921 agtactcagg tggtgtcatt gggaagatcc acgcgacgga ccaagacgtg tatgacacgt
    10981 taacctacag cctcgatccc caaatgggca gcctcttctc tgtctccagc acggggggca
    11041 agctgatagc ccacaagaag ctggacgtag ggcagtacct tctcaacgtc agcgtaacgg
    11101 atgggaaatt taccaccgca gctgatgtca cggtgcacat cagacaagtg acgcaggaga
    11161 tgttgaacca gaccgtggcc gtccgctttg gcaacctcac cccggaagag ttcgttggtg
    11221 actattggcg caacttccag cgagctttgc ggaacatcct gggcgtgagg aggagtgaca
    11281 ttcagatcgt tagcttgcag ccctccgagc ctcatccgca cctggacatc ttgctttttg
    11341 tagagaaatc aggtagcacc caggtctcaa caaaacaact tctgcacaag attaattctt
    11401 ccgtgacgga tattgaggag atcagtggtg tgaggatatt ggatgtgttc cagaagcttt
    11461 gtgcagggct ggattgcccc tggagattct gcgacgaaaa ggtgtccgtg gatgaaagtg
    11521 cgatgtcaac gcatagtacg gccagactga gctttgtgac cccgcgccac cgtaggacag
    11581 ctgtgtgtct ctgcacaggg ggaaaatgcc cacttgtcca tcatggatgt gaagacagtc
    11641 catgccctga aggatctgaa tgtgtcactg atcccagaga ggagacatac agctgcgtct
    11701 gtccaggtgg caagtttggc cagtgcccag ggagttcatc cgtaacattt actggaaaca
    11761 gctttgtgaa atatcgtcta atggaaaatg aaaacaagtt agagatgaaa ctgaccatga
    11821 ggctgcgaac atactctacc cacgcggttg tcatgtacgc tcgcggaact gactacagca
    11881 tcttggagat ccacaacgga aggctgcagt acaaattcga ctgtggaagc ggcccaggca
    11941 tcgtctctgt ccagagcatc caggtcaacg atgggctgtg gcacgcggtg tctcttgaag
    12001 tgaatggaaa ctatgccagg ttggttctag accaagtcca caccgcatca ggcacagccc
    12061 cggggacgct gaaaaccctc aacctggata gccatgtgtt ttttggtggc cacatccgtc
    12121 agcagggctc acggcatgga agaagccccc agattggcag tggtttcagg ggttgtatgg
    12181 actccattta tctgaatggg caggaactcc ctttaaataa caaaccaagg agctacgcac
    12241 acattgaaga atcggtggac gtgtctcctg ggtgcttgtt aacagctacg gaagactgct
    12301 cgagcagccc atgccagaac ggaggcgcct gccacccctc acccactgga ggttattact
    12361 gtaaatgcag tgccttgtac atagggacct attgtgaagt gggcatcaat ccgtgttcct
    12421 ccaatccctg cctgtacggt ggcacctgca ttgtggacaa tggagacttc ctttgtcaat
    12481 gtagaggatt atatactggt cagaggtgcc agcttagtcc ctactgcaaa gatgaaccct
    12541 gtaaaaatgg tggaacatgt tttgacagtt tggatggtgc tgtctgtcag tgtgactcgg
    12601 gttttagggg agaaaggtgt cagagtgaca ttgacgaatg tgctggcaac ccctgccgaa
    12661 atggagccct ttgcgagaac acacacggct cctaccactg taactgcagc cgtgagtaca
    12721 gaggaagaca ctgtgaggac gtcaccccaa accaatacgt gtcgaccccc tgggacatcg
    12781 gcctggctga gggcatcggc atcgtggttt tcataacggg catcttccta ctggtgctgc
    12841 tgttcatctt ctgccgcaag atgattagtc gaaggaagaa acaccagccc aaacctgagg
    12901 acaaacactt gggacccagc gcagctttct tgcaaagacc atattttgac tcaaagctca
    12961 ataagaacat gtactccgac gtaccacccc aggtgcctgt ccgtcctatc tcctacactc
    13021 caagcattcc aagcgactct agaaacaacc ttgaccgaaa ctccttcgaa ggatcggcta
    13081 tacccgagca ccccgaattc agcaccttta accccgagtc tgtgcacgga caccggaagg
    13141 ccgtggccgt ctgcagcgtg gccccaaacc tgcctccgcc gcctccttca aactctcctt
    13201 ctgacagtga ctcaatccag aagccgaact gggacttcga ctatgatact aaagtagtgg
    13261 atcttgatcc ttgtctctcc aaaaagccac tggaggaaaa gccttctcag ccgtacagtg
    13321 cccgggagag cctgtgtgaa gtgcagtccc tgagctcctt ccagtcggag ccgtgtgatg
    13381 acaacgggta tcactgggat acatcagatt ggatgccaag tgttcctctg ccagatatac
    13441 aagagttccc caattatgag gtgattgatg agcagacgcc cctgtactca gcagatccaa
    13501 acgccatcga tacagactat taccctggag gctacgacat cgagagtgac tttccacccc
    13561 cgccggagga cttccccgtg cctgacgagc tgccaccctt acctccagaa ttcagtgacc
    13621 agtttgaatc catacaccct cccagagaca tgcccgctgc agggagcctg ggctcttcat
    13681 cgagaagccg gcagaggttc aacttgaatc agtatctgcc caatttctat cctgccgata
    13741 tgtctgaacc tcagaaagca ggccctggtg agaacagtgc tcgcagagaa ccctacgccc
    13801 cttaccctcc agggtatcaa aggagctttg aagcctccac tgtagagaac atgcccgtgt
    13861 ccatgtacgc ctccacagct tcctgctctg acgtgtctgc gtgctgtgaa gccgagtctg
    13921 aggtcatgat gagtgactac gagagtggag atgatggcca cttcgaagag gtgacgatcc
    13981 ctccactcga ttctcaacag catacggagg tctgacgctc agactccccg caaagtgcct
    14041 gaaccgtaat gaacctagag attctgtcag tgatctcctg cattgatctt tgcagcagtg
    14101 cttaagcgct tttttccgtg agctgaaacg ggcatggctg cactgaatcc cacaccttgt
    14161 gacctgttag ccatttccag cgtcctaacc ttctgtcttt gggtgaggtt tacgtcggct
    14221 gtgccatttc tgagcatctt ttttgtattt acatttgtct gtgttaaaat aataaaatga
    14281 aaatcagtcc tactatcttg ttagcatgat tcatgtattt atatagattt gattatttta
    14341 atttccctgt ctttttttgt aaattttatg tacagatttg attttttcca gttttaacta
    14401 gaatttcaag atactttgtg catttgtttt tgaccgaatt ttggtggtgt tagtgtcatt
    14461 acctagcacc ctgatttttt aatataacca gggtttcact ctgtatcctt ttcaactgaa
    14521 gtatgacgtt tcgttaatac atttcagtat agtcattcat ttctatctgt acataggatg
    14581 aggacagatc ccatacatgg acatgtctta aatgggttgc tgtattttag aattgtaaag
    14641 atttttcatt attggaaact gtaatgggga ccttctgcag actgtttaga accaaaacca
    14701 ccatgacaca gtttttatag tgtctgtata tttgtgatgc aatggtcttg taaaggtttt
    14761 tactgaaaac taccattagc cagtctttct tactgacaat aaattattaa taaaata
//
LOCUS       XR_004347869           15326 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAT atypical cadherin 1 (FAT1),
            transcript variant X5, misc_RNA.
ACCESSION   XR_004347869
VERSION     XR_004347869.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15326
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15326
                     /gene="FAT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 34 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746777"
     misc_RNA        1..15326
                     /gene="FAT1"
                     /product="FAT atypical cadherin 1, transcript variant X5"
                     /db_xref="GeneID:116746777"
ORIGIN      
        1 agaaagccag ccggagaggt gcgcgccgcg gggccgcccc ggcgccgagt gcgaggaacg
       61 ccggcgctcg gcggagcccg ggagacgcgg cggggtggag aggggcagac gcttcactgt
      121 cgggactgca gcggccacag agaccgctgc ggcaggagag ccggccgagc ttccgagccc
      181 gcggccgcta ctgtccagga ggcggacccc gcgggagaat cccgtccagg cggcggggct
      241 gggggctagg cggggcgctg acgtcacctc ccctccccca cctcctccag gcgggaggga
      301 gtggggaaag aggcagtgat ccgccgcagc tcccagccgc aactcctaaa ctcagcggct
      361 cgctgcccgg acatgtcctg acaaacttgg tttctcttcg gccctctctc tagccctcgc
      421 gcactctcat ttcgcctcct tttgctgctc aagtttcccc caggacggaa gcctccggag
      481 atgcggccac ctgggcggcg cgggcggatc gcactctcgt tggcgacatg ctgaagatcc
      541 gagggaagca aagttggtac ttcatacacg gcttgtaaca aatattcaaa tcgcgtggcg
      601 attacggacc tgccgggact ttaaagcaga acaccgagga ctcggctgga cgggttcctg
      661 ggagttaagc gatggggagg catttggcct cgcttctgct tttgctcctc ctccagcatt
      721 ttggagacag tgatggaagc caagcacttg aacaaactcc tgtacagttc acacatttcc
      781 agtacaatgt cacagtgcat gaaaattctg cagcaaagac ctatgttggg catcccgtaa
      841 agatgggtat ttacattaca aatccactgt gggagttaag gtacaaaatt gtctcaggag
      901 acaatgaaaa cctattcaaa gctgaagagt acattcttgg agacttttgc tttctgagaa
      961 taaggaccaa aggaggaaat acagctattc ttaatagaga agtgaaagac cattacacgt
     1021 tgatagtcaa agcagttgaa aaaaatacta atatggaagc acgaacaaag gtcagggtac
     1081 aagtgctgga tacaaatgac ttgaggccat tattctcacc cacctcgtac agtgtttctt
     1141 tacctgaaaa cacagccctg aggaccagta ttgcaagagt cagtgccacg gatgcagaca
     1201 taggcaccaa tggagaattt tactacagtt ttaaagaccg aacagacatg tttgctatcc
     1261 accccaccag tggcaccata gttttaactg gtagacttga ctacacagag accaagttct
     1321 atgagatgga aattcttgct gtggaccgtg gcatgaaatt gtacgggagc agtggtatca
     1381 gcagcatggc taagctgaca gttcacgtag agcaggccaa cgagtgtgct cctgtgttaa
     1441 cagcagtgac gttatcacca tcggaattgg agaaggaccc aacgtatgcc atcataaccg
     1501 tggaggactg cgatcagggt gccaatgggg aagtcgcttc tttaagcatt gtggcaggag
     1561 acctccttca gcagtttaga acagtgagga cctctccagg gagcaaagag tataaactca
     1621 aagcagtcgg tgacattgat tgggacagtc atcctttcgg ctacaacctg acactacagg
     1681 cgaaagataa aggaagtcct ccccagttct cttctgtaaa agtaattcag gtgacttcac
     1741 cacggttcaa agctgggcca gtcaagtttg aaaaggaggt ttacagagca gaaataagtg
     1801 aatttgctcc tcccagcaca cccgtggtca cggtgaaagc cacacctagc tattctcatt
     1861 tgaagtatgt ttttaaaagt acacctggaa aagctaaatt cagtttaaat cacaacactg
     1921 gtctcatttc cattttagaa ccaattaaaa gacagcaagc ctcccagttt gaacttgaag
     1981 taacaacaag tgacagaaaa gcctcgacca aagtcttggt taaagtcttg agtgcaaata
     2041 gccatccccc tgaatttacc cagacagcct acaaagcatc ttttgacgag aacgtgccca
     2101 ttggtactac ggtgatgagt gtgagtgcta tagaccctga tgagggtgag aacgggtatg
     2161 tgacgtacag cattgcaaat ttgaatcatg tgccgtttgt gattaaccat ttcaccggtg
     2221 ctgtgagtac ttcagagaac ttggactatg agctgatgcc acgggtttat actctaagga
     2281 ttcgggcatc agactggggc ttgccatacc gccgggaggt tgaaatcctt gctaccctca
     2341 ctctcaataa cttgaatgac aacacacccc tgtttgagaa gataaactgt gaaggaacaa
     2401 ttcccaggga cctaggtgta ggggagcaga taaccactgt ttctgccatt gacgcggatg
     2461 aactgcagtt ggtgcggtat cagactgaag ctgggaatga actggatttg ttcagcttaa
     2521 accccagctc cggggtattg tcattaaagc agtcgctcat gaatggttta ggggcaaagg
     2581 tgtcatttca cagtctgaga attacagcta cagatggaga gaattttgcc acaccattat
     2641 acatcaacat aactgtggct gcccttcgca agccagtaaa cttgcactgc gaggagactg
     2701 gtgtggccag gatgctggca gagaaactcc tgcaggccaa taagttacac agtcagggag
     2761 aggttgagga tgtcttcttt gattctcact ctgtcaatgc tcacacacca cagtttagaa
     2821 gtacccttcc agctggtatt gaggtgaagg aaaatcatcc cgtgggttcc agcataattt
     2881 tcatgaatgc tactgacctg gacactggct tcaacggaaa actggtctat gctatttctg
     2941 gaggaaatga ggatagttgc ttcattattg acatggaaac aggaatgctc aaaattttat
     3001 ccccgcttga ccgtgaaaca acagacagat ataccctgaa tgttacggtg tctgacctcg
     3061 gtctgccaca gaaggctgct tggcgtcttc tggagatcag agttctggat gccaatgata
     3121 acccacctga gtttttacag gagaactatt tcgttgaagt gagtgaagac aaagagataa
     3181 atagtgaaat catccaggtt gaagccacag ataaagatct ggggcccaat ggacatgtga
     3241 catactctct tcttacagac acagataaat tttcaattga cagcacaact ggagtggtga
     3301 aaatcgtgaa ccccttggat cgtgaagaac agcacgtgca ttacgtaaag attgaagcca
     3361 gggatcaagc cagagaagaa ccgcagctgc tttccatggt gcttctgaag gtatcattag
     3421 aggatgttaa tgacaaccca cccaagttta ttccccctaa ttaccgtgtg aaagttcgag
     3481 aggaccttcc agaaggaacc ataatcatgt ggttagagac ctatgatcct gatttaagtc
     3541 agtctagtca ggtgagatac agtcttatgg accacggaga aggaaacttt gatgtggata
     3601 agctcagtgg agcagttaga atcatacagc agttggactt tgagaagaag caagtgtata
     3661 atctcactgt gagggccaaa gacaaaggga agcccatttc tctgtcttcc acttgctaca
     3721 ttgaagttga agtcatcgat gtgaatgaga acttacaccc accagtgttt cctagctttg
     3781 tggaaaaggg tgtagtgaaa gaaaatgtcc ctgttggttc atcagtgatg aaggtatcag
     3841 ctcatgatga ggacacagga agagatgggg agatccacta ttccattcga gatggttctg
     3901 gtgttggtgt tttcaaaata gatgaagaaa caggtgttat agagacttca ggtcgactgg
     3961 accgcgagtc cacctcccat tactggctaa cggtctacgc gtctgatcag ggcgtcgtgc
     4021 ccctttcctc ctttgtagag gtctatatag agctggagga tgtgaacgac aatgcaccgc
     4081 agacttcaga gcctgtttat tatccggaaa taatggaaaa ctctcccaag gatgtgtctg
     4141 tggtccagat tgaggcattt gatccagatt ctagctccga tgacaagttg acatacaaaa
     4201 ttacaagtgg aaatccacaa ggattttttt caataaatcc taagacaggt ctcatcacga
     4261 ctacatccag gaaactagac cgtgagcagc aaggtgaaca catattagaa gttacagtga
     4321 cagacaatgg tagtcccccc aagtcaacca ttgcaagagt aattgtgaag atccttgacg
     4381 aaaatgacaa caagcctcag ttcctgcaga agttctacaa aatcagactc ccagagcggg
     4441 aaaaaccaga acgagaaaga aacaccaagc gcgagccttt atatcgtgtt atagctacag
     4501 acaaagatga aggtcccaat gcagaaatct cctatagcat tgaagaggga aatgaacatg
     4561 gcaaattttt tattgagcca aaaactggag tggttttgtc caagaagttt tctggagctg
     4621 gagaatatga tattctttca attaaggcag ttgataatgg tcgcccccaa aagtcatcaa
     4681 ccactcgact ccatattgaa tggatctcca aacccaaacc gtccccggag ccaatttcat
     4741 ttgaagaatc attttttacc tttactgtaa tggaaagcga tccagttgct cacatgattg
     4801 gagtaatagc tgttgagcct ccaggcatac ctctttggtt tgacatcatt ggtggcaact
     4861 atgatagtca ctttgatgtg gacaagggca ctggaaccat cattattgcc aaacctcttg
     4921 atgcagaaca aaaatcaaac tacaatctca cagtcgaggc tacagatgga accaccacta
     4981 tactgactca ggtattcatc aaagtaatag acacaaatga ccatcgtcct cagttttcta
     5041 catcaaaata tgaagttgtt attcttgaag acacagcacc agaaacagaa attttgcaaa
     5101 tcagtgctgt ggataaagat gaaaaaaaca aactaatcta cactctgcag agcagtatcg
     5161 atccattgag tctcaagaaa tttcgccttg atcctgcaac tggctctctc tatacagcag
     5221 aaaaacttga tcatgaagcc attcagcagc atgttctcac agtcatggta cgagatcaag
     5281 atgtccctgt aaagcgcaac tttgcacgga ttgttgttaa tgtcagcgac accaatgacc
     5341 acgccccctg gttcatgagc tcctcctaca aagggcgggt ttatgaatca gcagctatcg
     5401 gctcagttgt gttgcaggtt acagctctgg acaaggacaa agggaaaaat gctgaagtgc
     5461 tgtactctat cgaatcagga aacattggaa attcttttac aattgatccc atcttgggct
     5521 ctataaaaac tgccaaagaa ttagatcgaa gtaaccaagt ggaatatgac ttaatggtaa
     5581 aagctataga taaaggcaac ccaccaatga gtgaaatcac ttctgtgtgt atctttgtca
     5641 ccatcgctga caacgcctct cccaagttta catcaaaaga gtattctgtt gaaattagtg
     5701 aaactatcag cattgggagt ttcgtcggaa tggttacagc ccatagtcag tcatcagtgg
     5761 tatatgaaat aaaagatgga aatatagctg atgcctttga tattaatcca cattctggaa
     5821 gtatcatcac tcagaaagct ttggattttg aaactttgcc catttataca ttgacaatac
     5881 aaggaactaa catggctggt ttgtctacga atacaaccgt tctagtgcat ctgcaggatg
     5941 aaaatgacaa cttgccagtt tttacgcagg cagaatatac ggggctcatt agcgaatcag
     6001 cttcaattca cagtgtggtc ctaacagaca ggaatgtccc attagttatt cgagccactg
     6061 atgctgataa agaatcaaat gctttgcttg tttatcacat tgttgagcca gctgtacaca
     6121 aatattttac tgttgattcc agcactggtg ctattcacac agtactaagt ttggactatg
     6181 agcagacaag tacttttcac ttcactgtac aagttcatga catgggaaca ccatgtttat
     6241 ttgctgaata tgcagccaac gtgactatcc atgttattga cattaatgac tgccctcctg
     6301 tgttctccac atcattgtat gaagcatctc ttttgttgcc aacatacaaa ggagtcaagg
     6361 tcattacagt aaatgctaca gatgctgatt caagcgcatt gtcacagtta atgtactcca
     6421 tcaccgaagg caacatcggg gagaagttct taatggacca caagactggt actataactg
     6481 tacaaaacac aactcagttg aggagccgct atgagttaac tgtcagggcc tctgatggca
     6541 gatttgcaag cttaacctct gtgaagatta acgtgaaaga aagcaaagaa agtcagctga
     6601 agtttaccca agatttctac tctgcggtag tgaaagagaa ttctactgaa gccagaagat
     6661 tagctgtcat aactgctatc gggaatccaa tcaacgaacc cctgttttat cacatcctca
     6721 acccagatcg cagattcaaa atcagccgca cgtccggagt tctgtcgacc actggcatac
     6781 cgtttgatcg tgaacagcag gagaccttta atgtggtagt ggaagtgaca caagaacgca
     6841 agccttcagc ggtggcccgt gtcattgtaa aggtcatcgt cgaagaccag aatgataatg
     6901 caccggtgtt tgtcaacctg ccttactacg ccgtcgttaa agtggatacc gccgtgggcc
     6961 atgttattcg ctatgtgaca gccatcgaca gagacggcgg caggaacggg gaagtgcact
     7021 actacctcaa ggaacaccac gaacacttcc aaattggagc ctcaggggaa atttcactga
     7081 aaaaacagtt tgaacctgac accttaaata aagaatatct tgtcacagtg gttgcaaaag
     7141 atggaggaaa cccagctttt tcggctgaag tcatggttcc catcaccgtt atgaacaaag
     7201 ccatgcctgt gtttgaaaag cctttctaca gtgccgagat tccagagaac gtccagatgc
     7261 acagccccgt tgtccacgta caagccaaca gtccagaggg cttgaaagtg ttctatagca
     7321 tcacagacgg tgatcctttc agccagttta ctattaactt caacactgga gttatcaatg
     7381 tcatagcgcc tctggacttt gagtcccacc cagcatataa actgagcatc cgagcgactg
     7441 actccttgac cggtgctcac gctgaggtct ttgtggacat aatcgtggaa gacgtcaatg
     7501 acaaccctcc cgtgtttgcc cagcagtcct atgccaccac cctgtccgag gcatctgtaa
     7561 tcggcacatc cgtggttcaa gtcagagcaa cagattctga ctcagaacca aacagaggga
     7621 tttcatacca tatgtttggg aatcacagca agagtcatga tcattttcac atagacagca
     7681 gcactggcct catttccctg gttaggactt tggattttga gcagttccag cagcacaaga
     7741 tttttgtaag ggctgttgat ggcggcatgc ctcctctgag cagcgatgtg gttgtcacag
     7801 tggatgtcac cgacctcaac gatcacccac cactatttga ccaacagata tatgaagcca
     7861 gaattagcga gcacgctgcc catgggcatt ttgtgacctg tgtaaaagcc tatgatgagg
     7921 acagttcaga catagacaag ttggaatatt ccattctgtc tggcaacgat cataagaatt
     7981 ttgtcattga cagcaggacg gggatcatca ctctctcaaa cctgcgccgg catgccctga
     8041 agccatcgta cacccttcag gtttctgtgt ctgacggagt ttttaggagt tcagctcagg
     8101 ttcatgtgag tgtgattgga ggcaatttgc acagtcccat ttttcttcag aacgaatatg
     8161 aagtggagct tgctgaaaat gctcccttgc acaccctggt gaccgaggtt aaagcaactg
     8221 atggggattc gggtatttac ggtcacgtta cctaccacat tgtaaatgac tttgccaaag
     8281 acaggtttta cacaaatgag agaggacaga tctttacttt agaaaaactt gatcgagaaa
     8341 ccccagtgga aaaagtaatc ccagttcgtt tcatggccaa ggacactggt ggaaaagttg
     8401 ctttctgcac cattaacgtc atccttacag atgacaacga taatgcacca cagtttcgag
     8461 caaccaagtt tgaggtgaat attggatcca atgctcccaa agggacgtca gtcatcaaag
     8521 tccttgccag tgacgctgat gagggatcca atgccgacat gacctatgcc attgaagcag
     8581 attctgaagg cgttaaagag aatttggaaa ttaacagact gtctggcata ataactacaa
     8641 aagaaagctt aattggctta gaaaatgagg tcttcacttt ctttgtcaga gctgtggata
     8701 atgggtctcc acccaaagaa tctgttgttc ccgtctatgt taaagtactt ccaccagaaa
     8761 tgcggcttcc aagattttca gaaccatttt acacctatac agtttcggaa gacgttccta
     8821 ttggaacaga aatagatctc attcgagcag agcatagcga gactgtcctt tacagcctag
     8881 tcaaagggaa tactccagag agcaacagag atgagttctt tgtgatcgac agacagagtg
     8941 ggagactgaa actggagaag ggtctggacc atgagacaac taagtggtac cagttttccg
     9001 tacttgccag gtgcactcac gatgactatg aggtggtggc ttctgtagat gttagtatcc
     9061 aagtgaaaga tgcaaatgat aacagccctg tcttggagtc tagtccatat gaggcattta
     9121 ctgttgaaaa cctgccaggg ggaagcagag tcatccagat cagggcgtct gatctagatt
     9181 caggaaccaa tggccaagtt atgtatagtc tagatcagtc acaaagtgta gaagtcatcg
     9241 aatctttcac cattaacatg gaaacaggat ggattacaac cctaaaggaa cttgaccacg
     9301 aagagagaga cagttatcag attaaggtgg ttgcatcaga tcatggtgaa aaggttcagc
     9361 tctcctccac agccattgtg gttgttactg tcaccgatgt caacgatagt cccccacggt
     9421 tcacagcaga gatttataaa gggactgtga gtgaagatga tccaccaggg ggcgtaattg
     9481 ccatcctgag taccacggat gctgattctg aagagatcaa cagacaagtt acatattaca
     9541 taacaggagg ggatcctttg gggcagtttg ctattgaaaa tatacagaat gaatggaagg
     9601 tctatgtgaa gaaacctcta gatagggaaa aaagggacaa ttatcttctg actatcacag
     9661 caactgatgg gaccttctca tcaaaagcta tagttgaagt caaagtcctt gatgcaaatg
     9721 acaacagtcc catttgtgaa aagactttat attccgacat gattccagaa gatgcctttc
     9781 ctgggaaatt gatcatgcag gtctctgcta cagatgcaga tatccgttcc aatgccgaaa
     9841 ttacttacac attatttggt ccaggtgcag aaaaattcaa actaaatcca gacacaggtg
     9901 aactgaaaac attagccccc cttgaccgcg aggaccaggc aacctataat cttctggtca
     9961 aagccacgga tggaggggga agattctgtc aagctgatat tgtgctcacg ttagaggatg
    10021 tgaatgataa tgccccccaa ttctctgctg atccttacac catcaccgtg tttgaaaaca
    10081 cagagcctgg cacgctcctg acaagggtac aggccacgga tgtggatgca ggactgaatc
    10141 ggaaggtatc ctactcactg attaactctg ctgatggaca gttctccatt aatgaattat
    10201 ctggaatcat tcagttagaa aagcctttgg atagagaact acaggcagta tacactctaa
    10261 ctttgaaagc tgtagatcat ggtttgccaa gaaggttgac agctaccggc actgttgttg
    10321 tatccatttt ggatataaat gacaacccac ccgtgtttga ataccgtgaa tatggtgcta
    10381 cagtgtctga ggatgttctc attggaacag aagttcttca agtgtatgca gcaagtaggg
    10441 acattgaagc aaatgcagaa atcacctact cgataataag tggaaacgaa catgggaaat
    10501 tcagcataga ttctaaaaca ggggccatat ttatcgttga gaatctggac tatgaaagct
    10561 ctcatgagta ttacctgacg gtggaagcca ctgatggggg cacaccttca ctgagtgatg
    10621 ttgtaactgt gaacgtcaat gtaacagaca tcaatgacaa taccccagtg ttcagccaag
    10681 acacctacac ggcggtgatc agtgaagatg ctgttcttga acagtctgtc attacagtta
    10741 tggcagatga tgccgatgga ccttcaaaca gccacatcca ctattcaatt atagacggca
    10801 atcaaggaag tccatttaca atcgaccctg ccaggggaga agtgaaagtg accaaacttc
    10861 tagaccggga aacaatttcg ggttacacgc tcaccgtgca ggcctcggac aacggcagtc
    10921 cacccagagt caccacgacc actgtgaaca tagacgtgtc tgatgtcaat gacaacgctc
    10981 ccatcttctc caggggaaac tacagcctga tcatccagga aaataagccc gtggggttca
    11041 gcgtgctgca gctggcagtg acggacaggg actcctccca caatggccct cccttcttct
    11101 tcagcattgt gagtggaaac aaggaggggg catttgaagt caaccagcag ggagccctcc
    11161 tgacggcagc tgccataaat aggaaagtga acgatcatta cttactgcac attaaggtgg
    11221 cagataacgg aaagcctcag ttgtcatctt tgacatacat tgacattaga gtcattgaag
    11281 agagcatcta tcctcctgca attttgccac tagagatttt cattactgct tttggagagg
    11341 agtactcagg tggtgtcatt gggaagatcc acgcgacgga ccaagacgtg tatgacacgt
    11401 taacctacag cctcgatccc caaatgggca gcctcttctc tgtctccagc acggggggca
    11461 agctgatagc ccacaagaag ctggacgtag ggcagtacct tctcaacgtc agcgtaacgg
    11521 atgggaaatt taccaccgca gctgatgtca cggtgcacat cagacaagtg acgcaggaga
    11581 tgttgaacca gaccgtggcc gtccgctttg gcaacctcac cccggaagag ttcgttggtg
    11641 actattggcg caacttccag cgagctttgc ggaacatcct gggcgtgagg aggagtgaca
    11701 ttcagatcgt tagcttgcag ccctccgagc ctcatccgca cctggacatc ttgctttttg
    11761 tagagaaatc aggtagcacc caggtctcaa caaaacaact tctgcacaag attaattctt
    11821 ccgtgacgga tattgaggag atcagtggtg tgaggatatt ggatgtgttc cagaagcttt
    11881 gtgcagggct ggattgcccc tggagattct gcgacgaaaa ggtgtccgtg gatgaaagtg
    11941 cgatgtcaac gcatagtacg gccagactga gctttgtgac cccgcgccac cgtaggacag
    12001 ctgtgtgtct ctgcacaggg ggaaaatgcc cacttgtcca tcatggatgt gaagacagtc
    12061 catgccctga aggatctgaa tgtgtcactg atcccagaga ggagacatac agctgcgtct
    12121 gtccaggtgg caagtttggc cagtgcccag ggagttcatc cgtaacattt actggaaaca
    12181 gctttgtgaa atatcgtcta atggaaaatg aaaacaagtt agagatgaaa ctgaccatga
    12241 ggctgcgaac atactctacc cacgcggttg tcatgtacgc tcgcggaact gactacagca
    12301 tcttggagat ccacaacgga aggctgcagt acaaattcga ctgtggaagc ggcccaggca
    12361 tcgtctctgt ccagagcatc caggtcaacg atgggctgtg gcacgcggtg tctcttgaag
    12421 tgaatggaaa ctatgccagg ttggttctag accaagtcca caccgcatca ggcacagccc
    12481 cggggacgct gaaaaccctc aacctggata gccatgtgtt ttttggtggc cacatccgtc
    12541 agcagggctc acggcatgga agaagccccc agattggcag tggtttcagg ggttgtatgg
    12601 actccattta tctgaatggg caggaactcc ctttaaataa caaaccaagg agctacgcac
    12661 acattgaaga atcggtggac gtgtctcctg ggtgcttgtt aacagctacg gaagactgct
    12721 cgagcagccc atgccagaac ggaggcgcct gccacccctc acccactgga ggttattact
    12781 gtaaatgcag tgccttgtac atagggacct attgtgaagt gggcatcaat ccgtgttcct
    12841 ccaatccctg cctgtacggt ggcacctgca ttgtggacaa tggagacttc ctttgtcaat
    12901 gtagaggatt atatactggt cagaggtgcc agcttagtcc ctactgcaaa gatgaaccct
    12961 gtaaaaatgg tggaacatgt tttgacagtt tggatggtgc tgtctgtcag tgtgactcgg
    13021 gttttagggg agaaaggtgt cagagtgaca ttgacgaatg tgctggcaac ccctgccgaa
    13081 atggagccct ttgcgagaac acacacggct cctaccactg taactgcagc cgtgagtaca
    13141 gaggaagaca ctgtgaggac gtcaccccaa accaatacgt gtcgaccccc tgggacatcg
    13201 gcctggctga gggcatcggc atcgtggttt tcataacggg catcttccta ctggtgctgc
    13261 tgttcatctt ctgccgcaag atgattagtc gaaggaagaa acaccagccc aaacctgagg
    13321 acaaacactt gggacccagc gcagctttct tgcaaagacc atattttgac tcaaagctca
    13381 ataagaacat gtactccgac gtaccacccc aggtgcctgt ccgtcctatc tcctacactc
    13441 caagcattcc aagcgactct agaaacaacc ttgaccgaaa ctccttcgaa ggatcggcta
    13501 tacccgagca ccccgaattc agcaccttta accccgagtc tgtgcacgga caccggaagg
    13561 ccgtggccgt ctgcagcgtg gccccaaacc tgcctccgcc gcctccttca aactctcctt
    13621 ctgacagtga ctcaatccag aagccgaact gggacttcga ctatgatact aaagtagtgg
    13681 atcttgatcc ttgtctctcc aaaaagccac tggaggaaaa gccttctcag ccgtacagtg
    13741 cccgggagag cctgtgtgaa gtgcagtccc tgagctcctt ccagtcggag ccgtgtgatg
    13801 acaacgctcc catttggatc agagcatact gactgagagc acagtttaag agattgctaa
    13861 gtcttttgct gctcctgacc tcagcaaatc aagagggtat cactgggata catcagattg
    13921 gatgccaagt gttcctctgc cagatataca agagttcccc aattatgagg tgattgatga
    13981 gcagacgccc ctgtactcag cagatccaaa cgccatcgat acagactatt accctggagg
    14041 ctacgacatc gagagtgact ttccaccccc gccggaggac ttccccgtgc ctgacgagct
    14101 gccaccctta cctccagaat tcagtgacca gtttgaatcc atacaccctc ccagagacat
    14161 gcccgctgca gggagcctgg gctcttcatc gagaagccgg cagaggttca acttgaatca
    14221 gtatctgccc aatttctatc ctgccgatat gtctgaacct cagaaagcag gccctggtga
    14281 gaacagtgct cgcagagaac cctacgcccc ttaccctcca gggtatcaaa ggagctttga
    14341 agcctccact gtagagaaca tgcccgtgtc catgtacgcc tccacagctt cctgctctga
    14401 cgtgtctgcg tgctgtgaag ccgagtctga ggtcatgatg agtgactacg agagtggaga
    14461 tgatggccac ttcgaagagg tgacgatccc tccactcgat tctcaacagc atacggaggt
    14521 ctgacgctca gactccccgc aaagtgcctg aaccgtaatg aacctagaga ttctgtcagt
    14581 gatctcctgc attgatcttt gcagcagtgc ttaagcgctt ttttccgtga gctgaaacgg
    14641 gcatggctgc actgaatccc acaccttgtg acctgttagc catttccagc gtcctaacct
    14701 tctgtctttg ggtgaggttt acgtcggctg tgccatttct gagcatcttt tttgtattta
    14761 catttgtctg tgttaaaata ataaaatgaa aatcagtcct actatcttgt tagcatgatt
    14821 catgtattta tatagatttg attattttaa tttccctgtc tttttttgta aattttatgt
    14881 acagatttga ttttttccag ttttaactag aatttcaaga tactttgtgc atttgttttt
    14941 gaccgaattt tggtggtgtt agtgtcatta cctagcaccc tgatttttta atataaccag
    15001 ggtttcactc tgtatccttt tcaactgaag tatgacgttt cgttaataca tttcagtata
    15061 gtcattcatt tctatctgta cataggatga ggacagatcc catacatgga catgtcttaa
    15121 atgggttgct gtattttaga attgtaaaga tttttcatta ttggaaactg taatggggac
    15181 cttctgcaga ctgtttagaa ccaaaaccac catgacacag tttttatagt gtctgtatat
    15241 ttgtgatgca atggtcttgt aaaggttttt actgaaaact accattagcc agtctttctt
    15301 actgacaata aattattaat aaaata
//
LOCUS       XM_032618474           20900 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAT atypical cadherin 1 (FAT1),
            transcript variant X6, mRNA.
ACCESSION   XM_032618474
VERSION     XM_032618474.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20900
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..20900
                     /gene="FAT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 46 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746777"
     CDS             672..13832
                     /gene="FAT1"
                     /codon_start=1
                     /product="protocadherin Fat 1 isoform X4"
                     /protein_id="XP_032474365.1"
                     /db_xref="GeneID:116746777"
                     /translation="MGRHLASLLLLLLLQHFGDSDGSQALEQTPVQFTHFQYNVTVHE
                     NSAAKTYVGHPVKMGIYITNPLWELRYKIVSGDNENLFKAEEYILGDFCFLRIRTKGG
                     NTAILNREVKDHYTLIVKAVEKNTNMEARTKVRVQVLDTNDLRPLFSPTSYSVSLPEN
                     TALRTSIARVSATDADIGTNGEFYYSFKDRTDMFAIHPTSGTIVLTGRLDYTETKFYE
                     MEILAVDRGMKLYGSSGISSMAKLTVHVEQANECAPVLTAVTLSPSELEKDPTYAIIT
                     VEDCDQGANGEVASLSIVAGDLLQQFRTVRTSPGSKEYKLKAVGDIDWDSHPFGYNLT
                     LQAKDKGSPPQFSSVKVIQVTSPRFKAGPVKFEKEVYRAEISEFAPPSTPVVTVKATP
                     SYSHLKYVFKSTPGKAKFSLNHNTGLISILEPIKRQQASQFELEVTTSDRKASTKVLV
                     KVLSANSHPPEFTQTAYKASFDENVPIGTTVMSVSAIDPDEGENGYVTYSIANLNHVP
                     FVINHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEILATLTLNNLNDNTP
                     LFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVRYQTEAGNELDLFSLNPSSGVLS
                     LKQSLMNGLGAKVSFHSLRITATDGENFATPLYINITVAALRKPVNLHCEETGVARML
                     AEKLLQANKLHSQGEVEDVFFDSHSVNAHTPQFRSTLPAGIEVKENHPVGSSIIFMNA
                     TDLDTGFNGKLVYAISGGNEDSCFIIDMETGMLKILSPLDRETTDRYTLNVTVSDLGL
                     PQKAAWRLLEIRVLDANDNPPEFLQENYFVEVSEDKEINSEIIQVEATDKDLGPNGHV
                     TYSLLTDTDKFSIDSTTGVVKIVNPLDREEQHVHYVKIEARDQAREEPQLLSMVLLKV
                     SLEDVNDNPPKFIPPNYRVKVREDLPEGTIIMWLETYDPDLSQSSQVRYSLMDHGEGN
                     FDVDKLSGAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYIEVEVIDVNENLHP
                     PVFPSFVEKGVVKENVPVGSSVMKVSAHDEDTGRDGEIHYSIRDGSGVGVFKIDEETG
                     VIETSGRLDRESTSHYWLTVYASDQGVVPLSSFVEVYIELEDVNDNAPQTSEPVYYPE
                     IMENSPKDVSVVQIEAFDPDSSSDDKLTYKITSGNPQGFFSINPKTGLITTTSRKLDR
                     EQQGEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQKFYKIRLPEREKPERE
                     RNTKREPLYRVIATDKDEGPNAEISYSIEEGNEHGKFFIEPKTGVVLSKKFSGAGEYD
                     ILSIKAVDNGRPQKSSTTRLHIEWISKPKPSPEPISFEESFFTFTVMESDPVAHMIGV
                     IAVEPPGIPLWFDIIGGNYDSHFDVDKGTGTIIIAKPLDAEQKSNYNLTVEATDGTTT
                     ILTQVFIKVIDTNDHRPQFSTSKYEVVILEDTAPETEILQISAVDKDEKNKLIYTLQS
                     SIDPLSLKKFRLDPATGSLYTAEKLDHEAIQQHVLTVMVRDQDVPVKRNFARIVVNVS
                     DTNDHAPWFMSSSYKGRVYESAAIGSVVLQVTALDKDKGKNAEVLYSIESGNIGNSFT
                     IDPILGSIKTAKELDRSNQVEYDLMVKAIDKGNPPMSEITSVCIFVTIADNASPKFTS
                     KEYSVEISETISIGSFVGMVTAHSQSSVVYEIKDGNIADAFDINPHSGSIITQKALDF
                     ETLPIYTLTIQGTNMAGLSTNTTVLVHLQDENDNLPVFTQAEYTGLISESASIHSVVL
                     TDRNVPLVIRATDADKESNALLVYHIVEPAVHKYFTVDSSTGAIHTVLSLDYEQTSTF
                     HFTVQVHDMGTPCLFAEYAANVTIHVIDINDCPPVFSTSLYEASLLLPTYKGVKVITV
                     NATDADSSALSQLMYSITEGNIGEKFLMDHKTGTITVQNTTQLRSRYELTVRASDGRF
                     ASLTSVKINVKESKESQLKFTQDFYSAVVKENSTEARRLAVITAIGNPINEPLFYHIL
                     NPDRRFKISRTSGVLSTTGIPFDREQQETFNVVVEVTQERKPSAVARVIVKVIVEDQN
                     DNAPVFVNLPYYAVVKVDTAVGHVIRYVTAIDRDGGRNGEVHYYLKEHHEHFQIGASG
                     EISLKKQFEPDTLNKEYLVTVVAKDGGNPAFSAEVMVPITVMNKAMPVFEKPFYSAEI
                     PENVQMHSPVVHVQANSPEGLKVFYSITDGDPFSQFTINFNTGVINVIAPLDFESHPA
                     YKLSIRATDSLTGAHAEVFVDIIVEDVNDNPPVFAQQSYATTLSEASVIGTSVVQVRA
                     TDSDSEPNRGISYHMFGNHSKSHDHFHIDSSTGLISLVRTLDFEQFQQHKIFVRAVDG
                     GMPPLSSDVVVTVDVTDLNDHPPLFDQQIYEARISEHAAHGHFVTCVKAYDEDSSDID
                     KLEYSILSGNDHKNFVIDSRTGIITLSNLRRHALKPSYTLQVSVSDGVFRSSAQVHVS
                     VIGGNLHSPIFLQNEYEVELAENAPLHTLVTEVKATDGDSGIYGHVTYHIVNDFAKDR
                     FYTNERGQIFTLEKLDRETPVEKVIPVRFMAKDTGGKVAFCTINVILTDDNDNAPQFR
                     ATKFEVNIGSNAPKGTSVIKVLASDADEGSNADMTYAIEADSEGVKENLEINRLSGII
                     TTKESLIGLENEVFTFFVRAVDNGSPPKESVVPVYVKVLPPEMRLPRFSEPFYTYTVS
                     EDVPIGTEIDLIRAEHSETVLYSLVKGNTPESNRDEFFVIDRQSGRLKLEKGLDHETT
                     KWYQFSVLARCTHDDYEVVASVDVSIQVKDANDNSPVLESSPYEAFTVENLPGGSRVI
                     QIRASDLDSGTNGQVMYSLDQSQSVEVIESFTINMETGWITTLKELDHEERDSYQIKV
                     VASDHGEKVQLSSTAIVVVTVTDVNDSPPRFTAEIYKGTVSEDDPPGGVIAILSTTDA
                     DSEEINRQVTYYITGGDPLGQFAIENIQNEWKVYVKKPLDREKRDNYLLTITATDGTF
                     SSKAIVEVKVLDANDNSPICEKTLYSDMIPEDAFPGKLIMQVSATDADIRSNAEITYT
                     LFGPGAEKFKLNPDTGELKTLAPLDREDQATYNLLVKATDGGGRFCQADIVLTLEDVN
                     DNAPQFSADPYTITVFENTEPGTLLTRVQATDVDAGLNRKVSYSLINSADGQFSINEL
                     SGIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATGTVVVSILDINDNPPVFEYREY
                     GATVSEDVLIGTEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGAIFIVENL
                     DYESSHEYYLTVEATDGGTPSLSDVVTVNVNVTDINDNTPVFSQDTYTAVISEDAVLE
                     QSVITVMADDADGPSNSHIHYSIIDGNQGSPFTIDPARGEVKVTKLLDRETISGYTLT
                     VQASDNGSPPRVTTTTVNIDVSDVNDNAPIFSRGNYSLIIQENKPVGFSVLQLAVTDR
                     DSSHNGPPFFFSIVSGNKEGAFEVNQQGALLTAAAINRKVNDHYLLHIKVADNGKPQL
                     SSLTYIDIRVIEESIYPPAILPLEIFITAFGEEYSGGVIGKIHATDQDVYDTLTYSLD
                     PQMGSLFSVSSTGGKLIAHKKLDVGQYLLNVSVTDGKFTTAADVTVHIRQVTQEMLNQ
                     TVAVRFGNLTPEEFVGDYWRNFQRALRNILGVRRSDIQIVSLQPSEPHPHLDILLFVE
                     KSGSTQVSTKQLLHKINSSVTDIEEISGVRILDVFQKLCAGLDCPWRFCDEKVSVDES
                     AMSTHSTARLSFVTPRHRRTAVCLCTGGKCPLVHHGCEDSPCPEGSECVTDPREETYS
                     CVCPGGKFGQCPGSSSVTFTGNSFVKYRLMENENKLEMKLTMRLRTYSTHAVVMYARG
                     TDYSILEIHNGRLQYKFDCGSGPGIVSVQSIQVNDGLWHAVSLEVNGNYARLVLDQVH
                     TASGTAPGTLKTLNLDSHVFFGGHIRQQGSRHGRSPQIGSGFRGCMDSIYLNGQELPL
                     NNKPRSYAHIEESVDVSPGCLLTATEDCSSSPCQNGGACHPSPTGGYYCKCSALYIGT
                     YCEVGINPCSSNPCLYGGTCIVDNGDFLCQCRGLYTGQRCQLSPYCKDEPCKNGGTCF
                     DSLDGAVCQCDSGFRGERCQSDIDECAGNPCRNGALCENTHGSYHCNCSREYRGRHCE
                     DVTPNQYVSTPWDIGLAEGIGIVVFITGIFLLVLLFIFCRKMISRRKKHQPKPEDKHL
                     GPSAAFLQRPYFDSKLNKNMYSDVPPQVPVRPISYTPSIPSDSRNNLDRNSFEGSAIP
                     EHPEFSTFNPESVHGHRKAVAVCSVAPNLPPPPPSNSPSDSDSIQKPNWDFDYDTKVV
                     DLDPCLSKKPLEEKPSQPYSARESLCEVQSLSSFQSEPCDDNAPIWIRAY"
     misc_feature    780..1100
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(801..806,993..995,999..1001,1089..1091,1095..1100)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1125..1424
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1146..1151,1299..1301,1305..1307,1413..1415,
                     1419..1424)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1488..1736
                     /gene="FAT1"
                     /note="Cadherin repeat-like domain; Region: CA_like;
                     cl46864"
                     /db_xref="CDD:481204"
     misc_feature    1779..2045
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1800..1805,1947..1949,1953..1955,2031..2033,
                     2037..2042)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2070..2363
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2088..2093,2244..2246,2250..2252,2349..2351,
                     2355..2360)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2391..2657
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    2838..3122
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2850..2855,3009..3011,3015..3017,3108..3110,
                     3114..3119)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3147..3437
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3165..3170,3318..3320,3324..3326,3423..3425,
                     3429..3434)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3462..3752
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3480..3485,3636..3638,3642..3644,3738..3740,
                     3744..3749)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3795..4073
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3801..3806,3960..3962,3966..3968,4059..4061,
                     4065..4070)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4095..4391
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4116..4121,4278..4280,4284..4286,4377..4379,
                     4383..4388)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4416..4700
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4755..5024
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4773..4778,4920..4922,4926..4928,5010..5012,
                     5016..5021)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5049..5342
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5067..5072,5229..5231,5235..5237,5328..5330,
                     5334..5339)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5364..5642
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    5679..5951
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5700..5705,5844..5846,5850..5852,5937..5939,
                     5943..5948)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5973..6290
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(5994..5999,6174..6176,6180..6182,6279..6281,
                     6285..6290)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6351..6578
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    6618..6899
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(6636..6641,6786..6788,6792..6794,6885..6887,
                     6891..6896)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    6921..7190
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    7227..7505
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7245..7250,7395..7397,7401..7403,7491..7493,
                     7497..7502)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7527..7826
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7548..7553,7713..7715,7719..7721,7812..7814,
                     7818..7823)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    7848..8132
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(7869..7874,8028..8030,8034..8036,8118..8120,
                     8124..8129)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8154..8444
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(8175..8180,8331..8333,8337..8339,8430..8432,
                     8436..8441)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    8469..8750
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    8790..9083
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(8808..8813,8967..8969,8973..8975,9069..9071,
                     9075..9080)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9105..9374
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    9432..9725
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9453..9458,9621..9623,9627..9629,9711..9713,
                     9717..9722)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    9762..10031
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(9768..9773,9924..9926,9930..9932,10017..10019,
                     10023..10028)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10053..10346
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10074..10079,10230..10232,10236..10238,10332..10334,
                     10338..10343)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10368..10661
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10389..10394,10548..10550,10554..10556,10647..10649,
                     10653..10658)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    10683..10976
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(10704..10709,10863..10865,10869..10871,10962..10964,
                     10968..10973)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    11001..11276
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    11349..11570
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    12228..12623
                     /gene="FAT1"
                     /note="Laminin G domain; Region: LamG; smart00282"
                     /db_xref="CDD:214598"
     misc_feature    12714..12818
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    12825..12932
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    12945..13037
                     /gene="FAT1"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    13047..13157
                     /gene="FAT1"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    order(13047..13049,13056..13058,13098..13100)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238011"
ORIGIN      
        1 agaaagccag ccggagaggt gcgcgccgcg gggccgcccc ggcgccgagt gcgaggaacg
       61 ccggcgctcg gcggagcccg ggagacgcgg cggggtggag aggggcagac gcttcactgt
      121 cgggactgca gcggccacag agaccgctgc ggcaggagag ccggccgagc ttccgagccc
      181 gcggccgcta ctgtccagga ggcggacccc gcgggagaat cccgtccagg cggcggggct
      241 gggggctagg cggggcgctg acgtcacctc ccctccccca cctcctccag gcgggaggga
      301 gtggggaaag aggcagtgat ccgccgcagc tcccagccgc aactcctaaa ctcagcggct
      361 cgctgcccgg acatgtcctg acaaacttgg tttctcttcg gccctctctc tagccctcgc
      421 gcactctcat ttcgcctcct tttgctgctc aagtttcccc caggacggaa gcctccggag
      481 atgcggccac ctgggcggcg cgggcggatc gcactctcgt tggcgacatg ctgaagatcc
      541 gagggaagca aagttggtac ttcatacacg gcttgtaaca aatattcaaa tcgcgtggcg
      601 attacggacc tgccgggact ttaaagcaga acaccgagga ctcggctgga cgggttcctg
      661 ggagttaagc gatggggagg catttggcct cgcttctgct tttgctcctc ctccagcatt
      721 ttggagacag tgatggaagc caagcacttg aacaaactcc tgtacagttc acacatttcc
      781 agtacaatgt cacagtgcat gaaaattctg cagcaaagac ctatgttggg catcccgtaa
      841 agatgggtat ttacattaca aatccactgt gggagttaag gtacaaaatt gtctcaggag
      901 acaatgaaaa cctattcaaa gctgaagagt acattcttgg agacttttgc tttctgagaa
      961 taaggaccaa aggaggaaat acagctattc ttaatagaga agtgaaagac cattacacgt
     1021 tgatagtcaa agcagttgaa aaaaatacta atatggaagc acgaacaaag gtcagggtac
     1081 aagtgctgga tacaaatgac ttgaggccat tattctcacc cacctcgtac agtgtttctt
     1141 tacctgaaaa cacagccctg aggaccagta ttgcaagagt cagtgccacg gatgcagaca
     1201 taggcaccaa tggagaattt tactacagtt ttaaagaccg aacagacatg tttgctatcc
     1261 accccaccag tggcaccata gttttaactg gtagacttga ctacacagag accaagttct
     1321 atgagatgga aattcttgct gtggaccgtg gcatgaaatt gtacgggagc agtggtatca
     1381 gcagcatggc taagctgaca gttcacgtag agcaggccaa cgagtgtgct cctgtgttaa
     1441 cagcagtgac gttatcacca tcggaattgg agaaggaccc aacgtatgcc atcataaccg
     1501 tggaggactg cgatcagggt gccaatgggg aagtcgcttc tttaagcatt gtggcaggag
     1561 acctccttca gcagtttaga acagtgagga cctctccagg gagcaaagag tataaactca
     1621 aagcagtcgg tgacattgat tgggacagtc atcctttcgg ctacaacctg acactacagg
     1681 cgaaagataa aggaagtcct ccccagttct cttctgtaaa agtaattcag gtgacttcac
     1741 cacggttcaa agctgggcca gtcaagtttg aaaaggaggt ttacagagca gaaataagtg
     1801 aatttgctcc tcccagcaca cccgtggtca cggtgaaagc cacacctagc tattctcatt
     1861 tgaagtatgt ttttaaaagt acacctggaa aagctaaatt cagtttaaat cacaacactg
     1921 gtctcatttc cattttagaa ccaattaaaa gacagcaagc ctcccagttt gaacttgaag
     1981 taacaacaag tgacagaaaa gcctcgacca aagtcttggt taaagtcttg agtgcaaata
     2041 gccatccccc tgaatttacc cagacagcct acaaagcatc ttttgacgag aacgtgccca
     2101 ttggtactac ggtgatgagt gtgagtgcta tagaccctga tgagggtgag aacgggtatg
     2161 tgacgtacag cattgcaaat ttgaatcatg tgccgtttgt gattaaccat ttcaccggtg
     2221 ctgtgagtac ttcagagaac ttggactatg agctgatgcc acgggtttat actctaagga
     2281 ttcgggcatc agactggggc ttgccatacc gccgggaggt tgaaatcctt gctaccctca
     2341 ctctcaataa cttgaatgac aacacacccc tgtttgagaa gataaactgt gaaggaacaa
     2401 ttcccaggga cctaggtgta ggggagcaga taaccactgt ttctgccatt gacgcggatg
     2461 aactgcagtt ggtgcggtat cagactgaag ctgggaatga actggatttg ttcagcttaa
     2521 accccagctc cggggtattg tcattaaagc agtcgctcat gaatggttta ggggcaaagg
     2581 tgtcatttca cagtctgaga attacagcta cagatggaga gaattttgcc acaccattat
     2641 acatcaacat aactgtggct gcccttcgca agccagtaaa cttgcactgc gaggagactg
     2701 gtgtggccag gatgctggca gagaaactcc tgcaggccaa taagttacac agtcagggag
     2761 aggttgagga tgtcttcttt gattctcact ctgtcaatgc tcacacacca cagtttagaa
     2821 gtacccttcc agctggtatt gaggtgaagg aaaatcatcc cgtgggttcc agcataattt
     2881 tcatgaatgc tactgacctg gacactggct tcaacggaaa actggtctat gctatttctg
     2941 gaggaaatga ggatagttgc ttcattattg acatggaaac aggaatgctc aaaattttat
     3001 ccccgcttga ccgtgaaaca acagacagat ataccctgaa tgttacggtg tctgacctcg
     3061 gtctgccaca gaaggctgct tggcgtcttc tggagatcag agttctggat gccaatgata
     3121 acccacctga gtttttacag gagaactatt tcgttgaagt gagtgaagac aaagagataa
     3181 atagtgaaat catccaggtt gaagccacag ataaagatct ggggcccaat ggacatgtga
     3241 catactctct tcttacagac acagataaat tttcaattga cagcacaact ggagtggtga
     3301 aaatcgtgaa ccccttggat cgtgaagaac agcacgtgca ttacgtaaag attgaagcca
     3361 gggatcaagc cagagaagaa ccgcagctgc tttccatggt gcttctgaag gtatcattag
     3421 aggatgttaa tgacaaccca cccaagttta ttccccctaa ttaccgtgtg aaagttcgag
     3481 aggaccttcc agaaggaacc ataatcatgt ggttagagac ctatgatcct gatttaagtc
     3541 agtctagtca ggtgagatac agtcttatgg accacggaga aggaaacttt gatgtggata
     3601 agctcagtgg agcagttaga atcatacagc agttggactt tgagaagaag caagtgtata
     3661 atctcactgt gagggccaaa gacaaaggga agcccatttc tctgtcttcc acttgctaca
     3721 ttgaagttga agtcatcgat gtgaatgaga acttacaccc accagtgttt cctagctttg
     3781 tggaaaaggg tgtagtgaaa gaaaatgtcc ctgttggttc atcagtgatg aaggtatcag
     3841 ctcatgatga ggacacagga agagatgggg agatccacta ttccattcga gatggttctg
     3901 gtgttggtgt tttcaaaata gatgaagaaa caggtgttat agagacttca ggtcgactgg
     3961 accgcgagtc cacctcccat tactggctaa cggtctacgc gtctgatcag ggcgtcgtgc
     4021 ccctttcctc ctttgtagag gtctatatag agctggagga tgtgaacgac aatgcaccgc
     4081 agacttcaga gcctgtttat tatccggaaa taatggaaaa ctctcccaag gatgtgtctg
     4141 tggtccagat tgaggcattt gatccagatt ctagctccga tgacaagttg acatacaaaa
     4201 ttacaagtgg aaatccacaa ggattttttt caataaatcc taagacaggt ctcatcacga
     4261 ctacatccag gaaactagac cgtgagcagc aaggtgaaca catattagaa gttacagtga
     4321 cagacaatgg tagtcccccc aagtcaacca ttgcaagagt aattgtgaag atccttgacg
     4381 aaaatgacaa caagcctcag ttcctgcaga agttctacaa aatcagactc ccagagcggg
     4441 aaaaaccaga acgagaaaga aacaccaagc gcgagccttt atatcgtgtt atagctacag
     4501 acaaagatga aggtcccaat gcagaaatct cctatagcat tgaagaggga aatgaacatg
     4561 gcaaattttt tattgagcca aaaactggag tggttttgtc caagaagttt tctggagctg
     4621 gagaatatga tattctttca attaaggcag ttgataatgg tcgcccccaa aagtcatcaa
     4681 ccactcgact ccatattgaa tggatctcca aacccaaacc gtccccggag ccaatttcat
     4741 ttgaagaatc attttttacc tttactgtaa tggaaagcga tccagttgct cacatgattg
     4801 gagtaatagc tgttgagcct ccaggcatac ctctttggtt tgacatcatt ggtggcaact
     4861 atgatagtca ctttgatgtg gacaagggca ctggaaccat cattattgcc aaacctcttg
     4921 atgcagaaca aaaatcaaac tacaatctca cagtcgaggc tacagatgga accaccacta
     4981 tactgactca ggtattcatc aaagtaatag acacaaatga ccatcgtcct cagttttcta
     5041 catcaaaata tgaagttgtt attcttgaag acacagcacc agaaacagaa attttgcaaa
     5101 tcagtgctgt ggataaagat gaaaaaaaca aactaatcta cactctgcag agcagtatcg
     5161 atccattgag tctcaagaaa tttcgccttg atcctgcaac tggctctctc tatacagcag
     5221 aaaaacttga tcatgaagcc attcagcagc atgttctcac agtcatggta cgagatcaag
     5281 atgtccctgt aaagcgcaac tttgcacgga ttgttgttaa tgtcagcgac accaatgacc
     5341 acgccccctg gttcatgagc tcctcctaca aagggcgggt ttatgaatca gcagctatcg
     5401 gctcagttgt gttgcaggtt acagctctgg acaaggacaa agggaaaaat gctgaagtgc
     5461 tgtactctat cgaatcagga aacattggaa attcttttac aattgatccc atcttgggct
     5521 ctataaaaac tgccaaagaa ttagatcgaa gtaaccaagt ggaatatgac ttaatggtaa
     5581 aagctataga taaaggcaac ccaccaatga gtgaaatcac ttctgtgtgt atctttgtca
     5641 ccatcgctga caacgcctct cccaagttta catcaaaaga gtattctgtt gaaattagtg
     5701 aaactatcag cattgggagt ttcgtcggaa tggttacagc ccatagtcag tcatcagtgg
     5761 tatatgaaat aaaagatgga aatatagctg atgcctttga tattaatcca cattctggaa
     5821 gtatcatcac tcagaaagct ttggattttg aaactttgcc catttataca ttgacaatac
     5881 aaggaactaa catggctggt ttgtctacga atacaaccgt tctagtgcat ctgcaggatg
     5941 aaaatgacaa cttgccagtt tttacgcagg cagaatatac ggggctcatt agcgaatcag
     6001 cttcaattca cagtgtggtc ctaacagaca ggaatgtccc attagttatt cgagccactg
     6061 atgctgataa agaatcaaat gctttgcttg tttatcacat tgttgagcca gctgtacaca
     6121 aatattttac tgttgattcc agcactggtg ctattcacac agtactaagt ttggactatg
     6181 agcagacaag tacttttcac ttcactgtac aagttcatga catgggaaca ccatgtttat
     6241 ttgctgaata tgcagccaac gtgactatcc atgttattga cattaatgac tgccctcctg
     6301 tgttctccac atcattgtat gaagcatctc ttttgttgcc aacatacaaa ggagtcaagg
     6361 tcattacagt aaatgctaca gatgctgatt caagcgcatt gtcacagtta atgtactcca
     6421 tcaccgaagg caacatcggg gagaagttct taatggacca caagactggt actataactg
     6481 tacaaaacac aactcagttg aggagccgct atgagttaac tgtcagggcc tctgatggca
     6541 gatttgcaag cttaacctct gtgaagatta acgtgaaaga aagcaaagaa agtcagctga
     6601 agtttaccca agatttctac tctgcggtag tgaaagagaa ttctactgaa gccagaagat
     6661 tagctgtcat aactgctatc gggaatccaa tcaacgaacc cctgttttat cacatcctca
     6721 acccagatcg cagattcaaa atcagccgca cgtccggagt tctgtcgacc actggcatac
     6781 cgtttgatcg tgaacagcag gagaccttta atgtggtagt ggaagtgaca caagaacgca
     6841 agccttcagc ggtggcccgt gtcattgtaa aggtcatcgt cgaagaccag aatgataatg
     6901 caccggtgtt tgtcaacctg ccttactacg ccgtcgttaa agtggatacc gccgtgggcc
     6961 atgttattcg ctatgtgaca gccatcgaca gagacggcgg caggaacggg gaagtgcact
     7021 actacctcaa ggaacaccac gaacacttcc aaattggagc ctcaggggaa atttcactga
     7081 aaaaacagtt tgaacctgac accttaaata aagaatatct tgtcacagtg gttgcaaaag
     7141 atggaggaaa cccagctttt tcggctgaag tcatggttcc catcaccgtt atgaacaaag
     7201 ccatgcctgt gtttgaaaag cctttctaca gtgccgagat tccagagaac gtccagatgc
     7261 acagccccgt tgtccacgta caagccaaca gtccagaggg cttgaaagtg ttctatagca
     7321 tcacagacgg tgatcctttc agccagttta ctattaactt caacactgga gttatcaatg
     7381 tcatagcgcc tctggacttt gagtcccacc cagcatataa actgagcatc cgagcgactg
     7441 actccttgac cggtgctcac gctgaggtct ttgtggacat aatcgtggaa gacgtcaatg
     7501 acaaccctcc cgtgtttgcc cagcagtcct atgccaccac cctgtccgag gcatctgtaa
     7561 tcggcacatc cgtggttcaa gtcagagcaa cagattctga ctcagaacca aacagaggga
     7621 tttcatacca tatgtttggg aatcacagca agagtcatga tcattttcac atagacagca
     7681 gcactggcct catttccctg gttaggactt tggattttga gcagttccag cagcacaaga
     7741 tttttgtaag ggctgttgat ggcggcatgc ctcctctgag cagcgatgtg gttgtcacag
     7801 tggatgtcac cgacctcaac gatcacccac cactatttga ccaacagata tatgaagcca
     7861 gaattagcga gcacgctgcc catgggcatt ttgtgacctg tgtaaaagcc tatgatgagg
     7921 acagttcaga catagacaag ttggaatatt ccattctgtc tggcaacgat cataagaatt
     7981 ttgtcattga cagcaggacg gggatcatca ctctctcaaa cctgcgccgg catgccctga
     8041 agccatcgta cacccttcag gtttctgtgt ctgacggagt ttttaggagt tcagctcagg
     8101 ttcatgtgag tgtgattgga ggcaatttgc acagtcccat ttttcttcag aacgaatatg
     8161 aagtggagct tgctgaaaat gctcccttgc acaccctggt gaccgaggtt aaagcaactg
     8221 atggggattc gggtatttac ggtcacgtta cctaccacat tgtaaatgac tttgccaaag
     8281 acaggtttta cacaaatgag agaggacaga tctttacttt agaaaaactt gatcgagaaa
     8341 ccccagtgga aaaagtaatc ccagttcgtt tcatggccaa ggacactggt ggaaaagttg
     8401 ctttctgcac cattaacgtc atccttacag atgacaacga taatgcacca cagtttcgag
     8461 caaccaagtt tgaggtgaat attggatcca atgctcccaa agggacgtca gtcatcaaag
     8521 tccttgccag tgacgctgat gagggatcca atgccgacat gacctatgcc attgaagcag
     8581 attctgaagg cgttaaagag aatttggaaa ttaacagact gtctggcata ataactacaa
     8641 aagaaagctt aattggctta gaaaatgagg tcttcacttt ctttgtcaga gctgtggata
     8701 atgggtctcc acccaaagaa tctgttgttc ccgtctatgt taaagtactt ccaccagaaa
     8761 tgcggcttcc aagattttca gaaccatttt acacctatac agtttcggaa gacgttccta
     8821 ttggaacaga aatagatctc attcgagcag agcatagcga gactgtcctt tacagcctag
     8881 tcaaagggaa tactccagag agcaacagag atgagttctt tgtgatcgac agacagagtg
     8941 ggagactgaa actggagaag ggtctggacc atgagacaac taagtggtac cagttttccg
     9001 tacttgccag gtgcactcac gatgactatg aggtggtggc ttctgtagat gttagtatcc
     9061 aagtgaaaga tgcaaatgat aacagccctg tcttggagtc tagtccatat gaggcattta
     9121 ctgttgaaaa cctgccaggg ggaagcagag tcatccagat cagggcgtct gatctagatt
     9181 caggaaccaa tggccaagtt atgtatagtc tagatcagtc acaaagtgta gaagtcatcg
     9241 aatctttcac cattaacatg gaaacaggat ggattacaac cctaaaggaa cttgaccacg
     9301 aagagagaga cagttatcag attaaggtgg ttgcatcaga tcatggtgaa aaggttcagc
     9361 tctcctccac agccattgtg gttgttactg tcaccgatgt caacgatagt cccccacggt
     9421 tcacagcaga gatttataaa gggactgtga gtgaagatga tccaccaggg ggcgtaattg
     9481 ccatcctgag taccacggat gctgattctg aagagatcaa cagacaagtt acatattaca
     9541 taacaggagg ggatcctttg gggcagtttg ctattgaaaa tatacagaat gaatggaagg
     9601 tctatgtgaa gaaacctcta gatagggaaa aaagggacaa ttatcttctg actatcacag
     9661 caactgatgg gaccttctca tcaaaagcta tagttgaagt caaagtcctt gatgcaaatg
     9721 acaacagtcc catttgtgaa aagactttat attccgacat gattccagaa gatgcctttc
     9781 ctgggaaatt gatcatgcag gtctctgcta cagatgcaga tatccgttcc aatgccgaaa
     9841 ttacttacac attatttggt ccaggtgcag aaaaattcaa actaaatcca gacacaggtg
     9901 aactgaaaac attagccccc cttgaccgcg aggaccaggc aacctataat cttctggtca
     9961 aagccacgga tggaggggga agattctgtc aagctgatat tgtgctcacg ttagaggatg
    10021 tgaatgataa tgccccccaa ttctctgctg atccttacac catcaccgtg tttgaaaaca
    10081 cagagcctgg cacgctcctg acaagggtac aggccacgga tgtggatgca ggactgaatc
    10141 ggaaggtatc ctactcactg attaactctg ctgatggaca gttctccatt aatgaattat
    10201 ctggaatcat tcagttagaa aagcctttgg atagagaact acaggcagta tacactctaa
    10261 ctttgaaagc tgtagatcat ggtttgccaa gaaggttgac agctaccggc actgttgttg
    10321 tatccatttt ggatataaat gacaacccac ccgtgtttga ataccgtgaa tatggtgcta
    10381 cagtgtctga ggatgttctc attggaacag aagttcttca agtgtatgca gcaagtaggg
    10441 acattgaagc aaatgcagaa atcacctact cgataataag tggaaacgaa catgggaaat
    10501 tcagcataga ttctaaaaca ggggccatat ttatcgttga gaatctggac tatgaaagct
    10561 ctcatgagta ttacctgacg gtggaagcca ctgatggggg cacaccttca ctgagtgatg
    10621 ttgtaactgt gaacgtcaat gtaacagaca tcaatgacaa taccccagtg ttcagccaag
    10681 acacctacac ggcggtgatc agtgaagatg ctgttcttga acagtctgtc attacagtta
    10741 tggcagatga tgccgatgga ccttcaaaca gccacatcca ctattcaatt atagacggca
    10801 atcaaggaag tccatttaca atcgaccctg ccaggggaga agtgaaagtg accaaacttc
    10861 tagaccggga aacaatttcg ggttacacgc tcaccgtgca ggcctcggac aacggcagtc
    10921 cacccagagt caccacgacc actgtgaaca tagacgtgtc tgatgtcaat gacaacgctc
    10981 ccatcttctc caggggaaac tacagcctga tcatccagga aaataagccc gtggggttca
    11041 gcgtgctgca gctggcagtg acggacaggg actcctccca caatggccct cccttcttct
    11101 tcagcattgt gagtggaaac aaggaggggg catttgaagt caaccagcag ggagccctcc
    11161 tgacggcagc tgccataaat aggaaagtga acgatcatta cttactgcac attaaggtgg
    11221 cagataacgg aaagcctcag ttgtcatctt tgacatacat tgacattaga gtcattgaag
    11281 agagcatcta tcctcctgca attttgccac tagagatttt cattactgct tttggagagg
    11341 agtactcagg tggtgtcatt gggaagatcc acgcgacgga ccaagacgtg tatgacacgt
    11401 taacctacag cctcgatccc caaatgggca gcctcttctc tgtctccagc acggggggca
    11461 agctgatagc ccacaagaag ctggacgtag ggcagtacct tctcaacgtc agcgtaacgg
    11521 atgggaaatt taccaccgca gctgatgtca cggtgcacat cagacaagtg acgcaggaga
    11581 tgttgaacca gaccgtggcc gtccgctttg gcaacctcac cccggaagag ttcgttggtg
    11641 actattggcg caacttccag cgagctttgc ggaacatcct gggcgtgagg aggagtgaca
    11701 ttcagatcgt tagcttgcag ccctccgagc ctcatccgca cctggacatc ttgctttttg
    11761 tagagaaatc aggtagcacc caggtctcaa caaaacaact tctgcacaag attaattctt
    11821 ccgtgacgga tattgaggag atcagtggtg tgaggatatt ggatgtgttc cagaagcttt
    11881 gtgcagggct ggattgcccc tggagattct gcgacgaaaa ggtgtccgtg gatgaaagtg
    11941 cgatgtcaac gcatagtacg gccagactga gctttgtgac cccgcgccac cgtaggacag
    12001 ctgtgtgtct ctgcacaggg ggaaaatgcc cacttgtcca tcatggatgt gaagacagtc
    12061 catgccctga aggatctgaa tgtgtcactg atcccagaga ggagacatac agctgcgtct
    12121 gtccaggtgg caagtttggc cagtgcccag ggagttcatc cgtaacattt actggaaaca
    12181 gctttgtgaa atatcgtcta atggaaaatg aaaacaagtt agagatgaaa ctgaccatga
    12241 ggctgcgaac atactctacc cacgcggttg tcatgtacgc tcgcggaact gactacagca
    12301 tcttggagat ccacaacgga aggctgcagt acaaattcga ctgtggaagc ggcccaggca
    12361 tcgtctctgt ccagagcatc caggtcaacg atgggctgtg gcacgcggtg tctcttgaag
    12421 tgaatggaaa ctatgccagg ttggttctag accaagtcca caccgcatca ggcacagccc
    12481 cggggacgct gaaaaccctc aacctggata gccatgtgtt ttttggtggc cacatccgtc
    12541 agcagggctc acggcatgga agaagccccc agattggcag tggtttcagg ggttgtatgg
    12601 actccattta tctgaatggg caggaactcc ctttaaataa caaaccaagg agctacgcac
    12661 acattgaaga atcggtggac gtgtctcctg ggtgcttgtt aacagctacg gaagactgct
    12721 cgagcagccc atgccagaac ggaggcgcct gccacccctc acccactgga ggttattact
    12781 gtaaatgcag tgccttgtac atagggacct attgtgaagt gggcatcaat ccgtgttcct
    12841 ccaatccctg cctgtacggt ggcacctgca ttgtggacaa tggagacttc ctttgtcaat
    12901 gtagaggatt atatactggt cagaggtgcc agcttagtcc ctactgcaaa gatgaaccct
    12961 gtaaaaatgg tggaacatgt tttgacagtt tggatggtgc tgtctgtcag tgtgactcgg
    13021 gttttagggg agaaaggtgt cagagtgaca ttgacgaatg tgctggcaac ccctgccgaa
    13081 atggagccct ttgcgagaac acacacggct cctaccactg taactgcagc cgtgagtaca
    13141 gaggaagaca ctgtgaggac gtcaccccaa accaatacgt gtcgaccccc tgggacatcg
    13201 gcctggctga gggcatcggc atcgtggttt tcataacggg catcttccta ctggtgctgc
    13261 tgttcatctt ctgccgcaag atgattagtc gaaggaagaa acaccagccc aaacctgagg
    13321 acaaacactt gggacccagc gcagctttct tgcaaagacc atattttgac tcaaagctca
    13381 ataagaacat gtactccgac gtaccacccc aggtgcctgt ccgtcctatc tcctacactc
    13441 caagcattcc aagcgactct agaaacaacc ttgaccgaaa ctccttcgaa ggatcggcta
    13501 tacccgagca ccccgaattc agcaccttta accccgagtc tgtgcacgga caccggaagg
    13561 ccgtggccgt ctgcagcgtg gccccaaacc tgcctccgcc gcctccttca aactctcctt
    13621 ctgacagtga ctcaatccag aagccgaact gggacttcga ctatgatact aaagtagtgg
    13681 atcttgatcc ttgtctctcc aaaaagccac tggaggaaaa gccttctcag ccgtacagtg
    13741 cccgggagag cctgtgtgaa gtgcagtccc tgagctcctt ccagtcggag ccgtgtgatg
    13801 acaacgctcc catttggatc agagcatact gactgagagc acagtttaag agattgctag
    13861 taagtttgat tatatttcta atgaagaagg tttgacggtg ggatcattga tgccagtttt
    13921 gtttatctga gggtaaatcg ccttgataat cagctttacc atattaacac ataccagtag
    13981 agaaaactgt caatattcag aaatacaaaa aagtgagttt ttagtggaaa tttttgaatg
    14041 tcagaattag taattttttt gcataaaaat gccatgtgta aaccgaattg tttgtgaatc
    14101 cagagtaaat agcccataat acactgaaga gacctttcta aactaaggat ggccataagt
    14161 acgttacatt cattcctgaa tcactttaag catgttttgt atgatatcaa ggtacacctg
    14221 tgtttattat ctagtgatga agtatatgga cataactgct tattaaacca acaacaaagt
    14281 ataattcttt ctttcagtag gtttaattct aaaacattag agttgctgat ttatgtaata
    14341 atttatatct ttgtccttaa atgctcttcg taaacctcag aattttgtca gcattttctt
    14401 tcttttccta gttttttttc actgaaacat cattcttaat actcttaaat agctttaata
    14461 agctatggtc aaattagtta tgaaaattaa ttgccagata atacaatgtg agaaaaaata
    14521 cattttccag gagtgtctgt attttaatct ttatcataat tttaatcatt atcagtcata
    14581 aagtctgtat taagagtgta tttaaattat attttttcat tttctaaggc tgttataata
    14641 gattacatag tggcttgaga caagataaat ttgtgacagt tctgtagttt agaaatttga
    14701 tgcttgtctc aggaggctaa atttcagatg tcagtaaggt tgtttctgga gactccaggg
    14761 tagaatccct ttcctgcacc ttttccagct tctagaggct gccccgctcc ttggctcatg
    14821 gcttactctt ccatccctca aagacagcaa cagtgcacct cctggccgtt ctgctctagt
    14881 cacagctccc tccagccaag actgggaaag ttgctccccg tttaagaacc cttgtgatta
    14941 cattgggcct gcacagataa tagcggaaaa tcccttcatc tcaggacctt taacttaatc
    15001 atattagcaa agtccctttt gccaaggata gtaacatatt cacaggttcc caggattagg
    15061 ttgtgtacat ctctgagggc catccttctg cctattacat gcatacttat ttattttggc
    15121 atagatgctt taaaacaact gaaaggggaa aacaaatgaa agggaattta cacaggaaac
    15181 agccaggcag acagtctgca tttctctgcg ggatgttagc tcaccagctg ttaactcatc
    15241 tgcagaaaga caagaaaatt ggggtgggag tacatagaac agcgacaaag ccatttttat
    15301 ttttatgttg catagtttac cttattatat agctcttaat tttttttcct gggaagaatg
    15361 agtttattaa atggtcccag aaaattggct tagcaagtat ttgactcttt gaacatgaaa
    15421 tcttttgccc atgggatgtt aaaataagga ttgttttgtc atgacttgat tcataattgt
    15481 cattgtgaca caaatttatg gctaaaaatt ttttccctaa attacagtat catgtggtta
    15541 ctctgttcct ttgattaata atacaaatat atagcttgat tagaaaaacc tctgaaacat
    15601 ataaggaaga gagtgcaagg gtcatacata attatatagc tatgttaaag tagtcacatt
    15661 tttaaaacta tgaggtagaa gttatataat ataaagaaat gctgtttaat gcactgtctc
    15721 ctgactaact gaagattttc ctaatttact ccttttgtac ctttttacaa gcttccatag
    15781 tgactgtaat acaccatgtc aatgctgtag ttgacacggt gactaaagaa ggtatagtca
    15841 tgcctgtgct ctgtgtttgt gttcacagtg actgtccctg gagttgtgtg cttttgccta
    15901 ctgtagtgtt gtacaaagtc cttatgttat ggttctgagg aggttgaata cgtttatttt
    15961 gtgcaggcgt gtacattaat aatccagata cattgcaaaa tattgttata tatgtgtgtc
    16021 tgtagtcttt gttacttttt gccgttcaca gtgaatttac acagatgcca gaagtcacct
    16081 atagggtctt gacagctgcc tttacatggc acaatagtaa gaagttagaa gtaattctat
    16141 ctaaaaaaat tttaatataa aaaattatct tcatatgaat aggagtaaaa ctgaataaca
    16201 cacagctttt ataattaact ctaactgact cttccttgtt ggattttccc tgaggcatgg
    16261 tcaaggaaaa ttatagaaca tgataagata tatttttata tttggttgag tgaaaatcat
    16321 tgaataggaa ggtttatctg gtcaaaatta caggaaatac ctgccttaaa ttaaattagc
    16381 cctttattat acactgaaat tcaagtaatc acatgcagac tgcacaggca ttttcaaact
    16441 gtaagtcaga tcaccgtaga gcttgtgaac accctaattg ttaggcccca gcaccaaggt
    16501 ttcaaggatt gaggaggtct ggatggggcc ctgagaattt gcattcccaa ccagccccca
    16561 ggtaattctg gtgttactgg tctaaggatc gcactgtgag aactactggc gtagaccacc
    16621 aagagtacat aaagcttagg ggatcctttt tgctaggaca tatgtgtcac caagacttag
    16681 gtgagagaag gatggtttca ggccaagttt gatgggatgg ggcaggggtg aggtttccgt
    16741 gtttactagt tacagttacc gatgagcctt acacttactc tcctaagaag taccatgtct
    16801 ttgcttggtg agtcagaagg tgatctgtat tttgtcgact gaattttagt tttcccatga
    16861 tgaaattcta atattttaaa tattgacaga gtttaaagaa gcaaaatttg agtgtttctt
    16921 tcattgcagt ctctttcatt gaaaaatatt ttcggggctt ccctggtggc acagtggttg
    16981 ggagtccgcc tgccgatgca ggggacacgg gttcatgccc cggtctgggg aggatcccac
    17041 attccgtgga gcggctgggc ccgtgagcca tggccgctga gcctgcgctt ccggagcctg
    17101 tgctccgcaa cgggaggggc cacagcagtg agaggcccgc gtaccgcaaa aaaaaaaaag
    17161 aaaaatattt tcggcatgtt aaatattaat tgagtttaaa attgaaagct agtttaaatt
    17221 taagaattat tgagtgccta tttagtaaca aaaattgtca atcctctttt taaaaagaaa
    17281 ctaccacagt tttagcaggc tttttagaat aattctgtag atacatgtta gctaaatact
    17341 ggcttattca tgttttagaa tcaccacagt tttttcagtg tttgatttaa attcctagaa
    17401 gagaaccgtc agatcttctt tgttccaagt tattttatca cagggatttt caagaacatc
    17461 attgaacgca cagaaggcat tggccttgtt gagaaagtca ctaatcacca tgattcttac
    17521 ttccacaata ataagaatca tgatggcctc caaccaacag ttagtgcttg acctacatta
    17581 tctgatttaa tcctccaaat aactaaggga tttccacccc catttcaaag ataagagcct
    17641 gaagcttagc cagggtaagc aacctgccca gggtcatgtg attcacactg actgtctctg
    17701 ctccatgctg gagttccacg tgcaaaacga ggaccctgaa agagcaagtg gatgggtggg
    17761 ctcagggtta caggcagcta atggtgtctc caaggaaagg tagacaacgt aggtataaaa
    17821 tcgtattcaa actgggcaag gtttggagag attttctctt ggctgttcat aagtgtctaa
    17881 gtgcattcat ggtttctctg aatttaatgg ccatgtgaag gccttgctgt gctggaaagt
    17941 atgtgtctct tgtgtcactg tggcttttgt atttggatta tcacctaagg gacctgatgt
    18001 gaccgagcct ttcataatat ttctcagtaa catgagggta tcatttaaat tccttaccag
    18061 tttacatttt attagagcct gtagactttc agttactcct aacaaaattt tgtgttttca
    18121 ggattagctt gccagaaaca agggaaagaa agtaaaatcc tgagtttcca ggcacagtcc
    18181 ctacttcatc atcactcatc ttttccctgc actcccacgt cccattttat ttgtgctaca
    18241 caaatttctc accatttgga attttcatag ataatggctt agaggcatgg tacatggctg
    18301 actgggcctt tataaacagt ttatattgtg ttatatgtac ttatctttat tgccttttca
    18361 gccatccttc tcttttaatt acaaatgttt tcttttctct ctactctgca accaaaagag
    18421 tcttttgctg ctcctgacct cagcaaatca agaggtgact tatgcatgcc agttgttcac
    18481 tgataattca ctaaaacaaa ttggcggagg ttcgacccag tgctgacttg cttcatgtgt
    18541 ttgcgcagta actagtgcat agttgttcgt gccctgcatt ctaaacgcga ctgcctcacc
    18601 ttcgcccgtc tgccaaagga tttcaaaaat cccggggtgg ggggagggtt ttttataata
    18661 attatacttt tataatatac agttgaaaat gatccttagt cctttttaaa gtaacaaaaa
    18721 ttgtagttta tcaaacattg tgttacagtt ttcaatgttt aattgcattt ttgatttgga
    18781 ggcatgcttt gatatgtcac tgtattaata tagttcattg tttttcttag ggctaatgga
    18841 aagtagtaca atttttaata ttaaacttat aatgttatta taaaggaaat ttatttttta
    18901 aattttagca tgctaaagat tgcttctatt taaaggctca cattaattac tgtttttttt
    18961 tttttaacga caagtagtgc agatcaagtg acgtttaata ttttactaaa tagagacttc
    19021 tttctgaaag gacaacattt ctttaccaat gtcctaagcc tgaactaata ctcttctttc
    19081 taaagagcag tgggttctaa attacaagag gaaagctgaa aggatgattg gaatcatttg
    19141 aagaaaagtg catgtatcta gatgctagca tactgcttct gttaaaactt ccatttcttt
    19201 atgtaagcac ctaacacttg agtgttaggt gcttacataa aactgtaagt ccacatttta
    19261 ggagccagag cctaattcat agaggttctc aaaagtggtt cgggatggga ggacgtcttc
    19321 aaagcagaga ccaagggttt ccagaatgtt gatcctctgt gcgtgggaat gcctttgcac
    19381 ctgtgtgtgt tgcatacact gagccctttt tccgtggtac gcactcttgg gaggaaaaca
    19441 cgttgaagtc tgttttcttt tctaccaagg gtatcactgg gatacatcag attggatgcc
    19501 aagtgttcct ctgccagata tacaagagtt ccccaattat gaggtgattg atgagcagac
    19561 gcccctgtac tcagcagatc caaacgccat cgatacagac tattaccctg gaggctacga
    19621 catcgagagt gactttccac ccccgccgga ggacttcccc gtgcctgacg agctgccacc
    19681 cttacctcca gaattcagtg accagtttga atccatacac cctcccagag acatgcccgc
    19741 tgcagggagc ctgggctctt catcgagaag ccggcagagg ttcaacttga atcagtatct
    19801 gcccaatttc tatcctgccg atatgtctga acctcagaaa gcaggccctg gtgagaacag
    19861 tgctcgcaga gaaccctacg ccccttaccc tccagggtat caaaggagct ttgaagcctc
    19921 cactgtagag aacatgcccg tgtccatgta cgcctccaca gcttcctgct ctgacgtgtc
    19981 tgcgtgctgt gaagccgagt ctgaggtcat gatgagtgac tacgagagtg gagatgatgg
    20041 ccacttcgaa gaggtgacga tccctccact cgattctcaa cagcatacgg aggtctgacg
    20101 ctcagactcc ccgcaaagtg cctgaaccgt aatgaaccta gagattctgt cagtgatctc
    20161 ctgcattgat ctttgcagca gtgcttaagc gcttttttcc gtgagctgaa acgggcatgg
    20221 ctgcactgaa tcccacacct tgtgacctgt tagccatttc cagcgtccta accttctgtc
    20281 tttgggtgag gtttacgtcg gctgtgccat ttctgagcat cttttttgta tttacatttg
    20341 tctgtgttaa aataataaaa tgaaaatcag tcctactatc ttgttagcat gattcatgta
    20401 tttatataga tttgattatt ttaatttccc tgtctttttt tgtaaatttt atgtacagat
    20461 ttgatttttt ccagttttaa ctagaatttc aagatacttt gtgcatttgt ttttgaccga
    20521 attttggtgg tgttagtgtc attacctagc accctgattt tttaatataa ccagggtttc
    20581 actctgtatc cttttcaact gaagtatgac gtttcgttaa tacatttcag tatagtcatt
    20641 catttctatc tgtacatagg atgaggacag atcccataca tggacatgtc ttaaatgggt
    20701 tgctgtattt tagaattgta aagatttttc attattggaa actgtaatgg ggaccttctg
    20761 cagactgttt agaaccaaaa ccaccatgac acagttttta tagtgtctgt atatttgtga
    20821 tgcaatggtc ttgtaaaggt ttttactgaa aactaccatt agccagtctt tcttactgac
    20881 aataaattat taataaaata
//
LOCUS       XM_032618475           16478 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAT atypical cadherin 1 (FAT1),
            transcript variant X7, mRNA.
ACCESSION   XM_032618475
VERSION     XM_032618475.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16478
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16478
                     /gene="FAT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 45 long SRA reads, 3 Proteins, and
                     71% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746777"
     CDS             1452..5882
                     /gene="FAT1"
                     /codon_start=1
                     /product="protocadherin Fat 1 isoform X5"
                     /protein_id="XP_032474366.1"
                     /db_xref="GeneID:116746777"
                     /translation="MGRHLASLLLLLLLQHFGDSDGSQALEQTPVQFTHFQYNVTVHE
                     NSAAKTYVGHPVKMGIYITNPLWELRYKIVSGDNENLFKAEEYILGDFCFLRIRTKGG
                     NTAILNREVKDHYTLIVKAVEKNTNMEARTKVRVQVLDTNDLRPLFSPTSYSVSLPEN
                     TALRTSIARVSATDADIGTNGEFYYSFKDRTDMFAIHPTSGTIVLTGRLDYTETKFYE
                     MEILAVDRGMKLYGSSGISSMAKLTVHVEQANECAPVLTAVTLSPSELEKDPTYAIIT
                     VEDCDQGANGEVASLSIVAGDLLQQFRTVRTSPGSKEYKLKAVGDIDWDSHPFGYNLT
                     LQAKDKGSPPQFSSVKVIQVTSPRFKAGPVKFEKEVYRAEISEFAPPSTPVVTVKATP
                     SYSHLKYVFKSTPGKAKFSLNHNTGLISILEPIKRQQASQFELEVTTSDRKASTKVLV
                     KVLSANSHPPEFTQTAYKASFDENVPIGTTVMSVSAIDPDEGENGYVTYSIANLNHVP
                     FVINHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEILATLTLNNLNDNTP
                     LFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVRYQTEAGNELDLFSLNPSSGVLS
                     LKQSLMNGLGAKVSFHSLRITATDGENFATPLYINITVAALRKPVNLHCEETGVARML
                     AEKLLQANKLHSQGEVEDVFFDSHSVNAHTPQFRSTLPAGIEVKENHPVGSSIIFMNA
                     TDLDTGFNGKLVYAISGGNEDSCFIIDMETGMLKILSPLDRETTDRYTLNVTVSDLGL
                     PQKAAWRLLEIRVLDANDNPPEFLQENYFVEVSEDKEINSEIIQVEATDKDLGPNGHV
                     TYSLLTDTDKFSIDSTTGVVKIVNPLDREEQHVHYVKIEARDQAREEPQLLSMVLLKV
                     SLEDVNDNPPKFIPPNYRVKVREDLPEGTIIMWLETYDPDLSQSSQVRYSLMDHGEGN
                     FDVDKLSGAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYIEVEVIDVNENLHP
                     PVFPSFVEKGVVKENVPVGSSVMKVSAHDEDTGRDGEIHYSIRDGSGVGVFKIDEETG
                     VIETSGRLDRESTSHYWLTVYASDQGVVPLSSFVEVYIELEDVNDNAPQTSEPVYYPE
                     IMENSPKDVSVVQIEAFDPDSSSDDKLTYKITSGNPQGFFSINPKTGLITTTSRKLDR
                     EQQGEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQKFYKIRLPEREKPERE
                     RNTKREPLYRVIATDKDEGPNAEISYSIEEGNEHGKFFIEPKTGVVLSKKFSGAGEYD
                     ILSIKAVDNGRPQKSSTTRLHIEWISKPKPSPEPISFEESFFTFTVMESDPVAHMIGV
                     IAVEPPGIPLWFDIIGGNYDSHFDVDKGTGTIIIAKPLDAEQKSNYNLTVEATDGTTT
                     ILTQVGKLLMIQCSDLSVHRQYEQLILPSEVLKSDVTILI"
     misc_feature    1560..1880
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1581..1586,1773..1775,1779..1781,1869..1871,
                     1875..1880)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1905..2204
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1926..1931,2079..2081,2085..2087,2193..2195,
                     2199..2204)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2268..2516
                     /gene="FAT1"
                     /note="Cadherin repeat-like domain; Region: CA_like;
                     cl46864"
                     /db_xref="CDD:481204"
     misc_feature    2559..2825
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2580..2585,2727..2729,2733..2735,2811..2813,
                     2817..2822)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2850..3143
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2868..2873,3024..3026,3030..3032,3129..3131,
                     3135..3140)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3171..3437
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    3618..3902
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3630..3635,3789..3791,3795..3797,3888..3890,
                     3894..3899)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3927..4217
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3945..3950,4098..4100,4104..4106,4203..4205,
                     4209..4214)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4242..4532
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4260..4265,4416..4418,4422..4424,4518..4520,
                     4524..4529)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4575..4853
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4581..4586,4740..4742,4746..4748,4839..4841,
                     4845..4850)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4875..5171
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4896..4901,5058..5060,5064..5066,5157..5159,
                     5163..5168)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    5196..5480
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    5535..5768
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
ORIGIN      
        1 atatatatat tccagagtag gttttttcct ggagtctgga cgcttacgta gaaaggacgt
       61 attcacttac aaactccact tcaacagcgt ttgcatctgt cttagtctac agcacgagta
      121 gccgaccgat ttgtgtactg gcccccatca ctacggatga cttgtaggaa acattagaaa
      181 ctggctcctc ctccacctct ccctccaccc cttggatcct tgtacgcttc agagtacgat
      241 ctaaaaacgt aggcgctttt ggagaggatt tgaacattaa aatatggctc cgtgattttc
      301 aacacaaaga ccacaaacag cgctagagca caagtattta aaatagatca catcctaaag
      361 ttggaaggct acaaagtaca agtcgtccag gctagtccgc agagactgtt cgtgcttccg
      421 ccctgcaaca acacggcagg cgacacgtcg cgacgaattt cagctgcaga agaggaagag
      481 catcacctgc agttcgaggc gtgggaaacg cggccggagg cgggcttgcg agaaagccag
      541 ccggagaggt gcgcgccgcg gggccgcccc ggcgccgagt gcgaggaacg ccggcgctcg
      601 gcggagcccg ggagacgcgg cggggtggag aggggcagac gcttcactgt cgggactgca
      661 gcggccacag agaccgctgc ggcaggagag ccggccgagc ttccgagccc gcggccgcta
      721 ctgtccagga ggcggacccc gcgggagaat cccgtccagg cggcggggct gggggctagg
      781 cggggcgctg acgtcacctc ccctccccca cctcctccag gcgggaggga gtggggaaag
      841 aggcagtgat ccgccgcagc tcccagccgc aactcctaaa ctcagcggct cgctgcccgg
      901 acatgtcctg acaaacttgg tttctcttcg gccctctctc tagccctcgc gcactctcat
      961 ttcgcctcct tttgctgctc aagtttcccc caggacggaa gcctccggag atgcggccac
     1021 ctgggcggcg cgggcggatc gcactctcgt tggcgacatg ctgaagatcc gagggaagca
     1081 aagttggtac ttcatacacg gcttgtaaca aatattcaaa tcgcgtggcg attacggacc
     1141 tgccgggact ttaaagcaga acaccgagga ctcggctgga cgggaacatc cgacgtcctt
     1201 cacccttcat ccatgaggcc atactgatga aaacaaatga taaagacatt aggagagaat
     1261 agacaaatct cccttacaga agaactctaa acaatttatg taacataact ctccacccct
     1321 aagtgtggac tgcacgtagc gacttccttc caaagggcac agtaggggaa gggggcagca
     1381 agtaccccgc tgcggagaaa cccgacaagc gctgcttcaa cccagtgaac agggttcctg
     1441 ggagttaagc gatggggagg catttggcct cgcttctgct tttgctcctc ctccagcatt
     1501 ttggagacag tgatggaagc caagcacttg aacaaactcc tgtacagttc acacatttcc
     1561 agtacaatgt cacagtgcat gaaaattctg cagcaaagac ctatgttggg catcccgtaa
     1621 agatgggtat ttacattaca aatccactgt gggagttaag gtacaaaatt gtctcaggag
     1681 acaatgaaaa cctattcaaa gctgaagagt acattcttgg agacttttgc tttctgagaa
     1741 taaggaccaa aggaggaaat acagctattc ttaatagaga agtgaaagac cattacacgt
     1801 tgatagtcaa agcagttgaa aaaaatacta atatggaagc acgaacaaag gtcagggtac
     1861 aagtgctgga tacaaatgac ttgaggccat tattctcacc cacctcgtac agtgtttctt
     1921 tacctgaaaa cacagccctg aggaccagta ttgcaagagt cagtgccacg gatgcagaca
     1981 taggcaccaa tggagaattt tactacagtt ttaaagaccg aacagacatg tttgctatcc
     2041 accccaccag tggcaccata gttttaactg gtagacttga ctacacagag accaagttct
     2101 atgagatgga aattcttgct gtggaccgtg gcatgaaatt gtacgggagc agtggtatca
     2161 gcagcatggc taagctgaca gttcacgtag agcaggccaa cgagtgtgct cctgtgttaa
     2221 cagcagtgac gttatcacca tcggaattgg agaaggaccc aacgtatgcc atcataaccg
     2281 tggaggactg cgatcagggt gccaatgggg aagtcgcttc tttaagcatt gtggcaggag
     2341 acctccttca gcagtttaga acagtgagga cctctccagg gagcaaagag tataaactca
     2401 aagcagtcgg tgacattgat tgggacagtc atcctttcgg ctacaacctg acactacagg
     2461 cgaaagataa aggaagtcct ccccagttct cttctgtaaa agtaattcag gtgacttcac
     2521 cacggttcaa agctgggcca gtcaagtttg aaaaggaggt ttacagagca gaaataagtg
     2581 aatttgctcc tcccagcaca cccgtggtca cggtgaaagc cacacctagc tattctcatt
     2641 tgaagtatgt ttttaaaagt acacctggaa aagctaaatt cagtttaaat cacaacactg
     2701 gtctcatttc cattttagaa ccaattaaaa gacagcaagc ctcccagttt gaacttgaag
     2761 taacaacaag tgacagaaaa gcctcgacca aagtcttggt taaagtcttg agtgcaaata
     2821 gccatccccc tgaatttacc cagacagcct acaaagcatc ttttgacgag aacgtgccca
     2881 ttggtactac ggtgatgagt gtgagtgcta tagaccctga tgagggtgag aacgggtatg
     2941 tgacgtacag cattgcaaat ttgaatcatg tgccgtttgt gattaaccat ttcaccggtg
     3001 ctgtgagtac ttcagagaac ttggactatg agctgatgcc acgggtttat actctaagga
     3061 ttcgggcatc agactggggc ttgccatacc gccgggaggt tgaaatcctt gctaccctca
     3121 ctctcaataa cttgaatgac aacacacccc tgtttgagaa gataaactgt gaaggaacaa
     3181 ttcccaggga cctaggtgta ggggagcaga taaccactgt ttctgccatt gacgcggatg
     3241 aactgcagtt ggtgcggtat cagactgaag ctgggaatga actggatttg ttcagcttaa
     3301 accccagctc cggggtattg tcattaaagc agtcgctcat gaatggttta ggggcaaagg
     3361 tgtcatttca cagtctgaga attacagcta cagatggaga gaattttgcc acaccattat
     3421 acatcaacat aactgtggct gcccttcgca agccagtaaa cttgcactgc gaggagactg
     3481 gtgtggccag gatgctggca gagaaactcc tgcaggccaa taagttacac agtcagggag
     3541 aggttgagga tgtcttcttt gattctcact ctgtcaatgc tcacacacca cagtttagaa
     3601 gtacccttcc agctggtatt gaggtgaagg aaaatcatcc cgtgggttcc agcataattt
     3661 tcatgaatgc tactgacctg gacactggct tcaacggaaa actggtctat gctatttctg
     3721 gaggaaatga ggatagttgc ttcattattg acatggaaac aggaatgctc aaaattttat
     3781 ccccgcttga ccgtgaaaca acagacagat ataccctgaa tgttacggtg tctgacctcg
     3841 gtctgccaca gaaggctgct tggcgtcttc tggagatcag agttctggat gccaatgata
     3901 acccacctga gtttttacag gagaactatt tcgttgaagt gagtgaagac aaagagataa
     3961 atagtgaaat catccaggtt gaagccacag ataaagatct ggggcccaat ggacatgtga
     4021 catactctct tcttacagac acagataaat tttcaattga cagcacaact ggagtggtga
     4081 aaatcgtgaa ccccttggat cgtgaagaac agcacgtgca ttacgtaaag attgaagcca
     4141 gggatcaagc cagagaagaa ccgcagctgc tttccatggt gcttctgaag gtatcattag
     4201 aggatgttaa tgacaaccca cccaagttta ttccccctaa ttaccgtgtg aaagttcgag
     4261 aggaccttcc agaaggaacc ataatcatgt ggttagagac ctatgatcct gatttaagtc
     4321 agtctagtca ggtgagatac agtcttatgg accacggaga aggaaacttt gatgtggata
     4381 agctcagtgg agcagttaga atcatacagc agttggactt tgagaagaag caagtgtata
     4441 atctcactgt gagggccaaa gacaaaggga agcccatttc tctgtcttcc acttgctaca
     4501 ttgaagttga agtcatcgat gtgaatgaga acttacaccc accagtgttt cctagctttg
     4561 tggaaaaggg tgtagtgaaa gaaaatgtcc ctgttggttc atcagtgatg aaggtatcag
     4621 ctcatgatga ggacacagga agagatgggg agatccacta ttccattcga gatggttctg
     4681 gtgttggtgt tttcaaaata gatgaagaaa caggtgttat agagacttca ggtcgactgg
     4741 accgcgagtc cacctcccat tactggctaa cggtctacgc gtctgatcag ggcgtcgtgc
     4801 ccctttcctc ctttgtagag gtctatatag agctggagga tgtgaacgac aatgcaccgc
     4861 agacttcaga gcctgtttat tatccggaaa taatggaaaa ctctcccaag gatgtgtctg
     4921 tggtccagat tgaggcattt gatccagatt ctagctccga tgacaagttg acatacaaaa
     4981 ttacaagtgg aaatccacaa ggattttttt caataaatcc taagacaggt ctcatcacga
     5041 ctacatccag gaaactagac cgtgagcagc aaggtgaaca catattagaa gttacagtga
     5101 cagacaatgg tagtcccccc aagtcaacca ttgcaagagt aattgtgaag atccttgacg
     5161 aaaatgacaa caagcctcag ttcctgcaga agttctacaa aatcagactc ccagagcggg
     5221 aaaaaccaga acgagaaaga aacaccaagc gcgagccttt atatcgtgtt atagctacag
     5281 acaaagatga aggtcccaat gcagaaatct cctatagcat tgaagaggga aatgaacatg
     5341 gcaaattttt tattgagcca aaaactggag tggttttgtc caagaagttt tctggagctg
     5401 gagaatatga tattctttca attaaggcag ttgataatgg tcgcccccaa aagtcatcaa
     5461 ccactcgact ccatattgaa tggatctcca aacccaaacc gtccccggag ccaatttcat
     5521 ttgaagaatc attttttacc tttactgtaa tggaaagcga tccagttgct cacatgattg
     5581 gagtaatagc tgttgagcct ccaggcatac ctctttggtt tgacatcatt ggtggcaact
     5641 atgatagtca ctttgatgtg gacaagggca ctggaaccat cattattgcc aaacctcttg
     5701 atgcagaaca aaaatcaaac tacaatctca cagtcgaggc tacagatgga accaccacta
     5761 tactgactca ggtaggcaaa ttgctgatga tacagtgttc tgatctaagt gtccacaggc
     5821 aatatgaaca attgattctg ccctctgagg ttctcaaatc agacgttact attttgatat
     5881 agtttatgca catgtacaca gcaaggattt ttatttaggg aatgaaatat cactgcaaat
     5941 cctgttttag gttttgaatg taattaacca gttttgaaaa ctttgaaaga agacttgaaa
     6001 aaaaaaaaac acgatatgcc atcagaatct tttattttta cgctcatttt gaattgtact
     6061 agtataaagt atatcactgt caaggatgac ttgtccaagt catttgcatt aaaactggtt
     6121 aaagtgatta attatctttt aaaacacttt tttgggtttt tccccccttg actaccttag
     6181 gctgtgtaaa ataactgata aaactgttct attcctttaa atatctttgt tcctatctga
     6241 tgattaagac atggtccgat tactggcatt tcaaattgaa atgtcagaac cctataaatt
     6301 acgtttaagt tctgttcttt cttatcagtt tctctgattc acagtggggg ctgtttgaga
     6361 acttcttaaa tacttgctgt gtgccaggta ttgttctaga agctgagtag taggaaacaa
     6421 aatcctgccc tcttggagtt tacattacaa tgataaagcc aaagcctcgt gtttaatgtg
     6481 ctgtgtgtga aaagtaaaag gaagaaatta aatgttagag gataaaatgc ttctgaattc
     6541 caatttccta tctttagatt atactatttt aaatcttaag acagatcatt tgctaaatca
     6601 tttagttgca ttgaagaata aaaattagtc tgtgttgtct tttcaattaa taaatgaata
     6661 gataatttaa agtcagttgt gaaatgacct tatttctttg tccaaatgct tgtgattttt
     6721 aatgtatttt aaattgataa tatgaatcat gctttggggt cattttgagg ttgtcatgtg
     6781 aaagtaccag cacagtatta aaatttcagc cttgtcagta actgttctca ttgtagaaac
     6841 tagactttag agcatgaaaa tgagaagaaa agcatcaaga attgtaataa attgagcagg
     6901 gtaattctga aaggttaaag agtgtaactg tatgtagatc agttcaagta attgactaac
     6961 cggaagtcta gcaaagggaa cttaataacc agtagaaatg accctctgtg ccaagccttc
     7021 tcattactaa agatgatata tctacctgta gcatttatca cttactacat aactcacagt
     7081 aagtgtagtt ttcattagta tagttaagag cttagtatga aatacagtga ctaaaattcc
     7141 cataaaaccc agtaaatata ttctctcagg gacacagaat ttcttcaatt tcaatgcttc
     7201 gggcatactt ctctaactta ttttgagtca ttttcagagg gtcttgataa tatcctagtg
     7261 aattgctggc agggagaggt agagtatcag agagcggtcc agatcccagg ctgacctgtc
     7321 caggtgtggg tcattaggga acaatgacaa gtaattaggt tttgattccc agtctggggc
     7381 tgagaacagg gagataggaa tctgagtggg aggagagcag caaataccag ctgaagaggg
     7441 acacagatca gaacccagct gacaaggcac tggaacacag caggtagatt cctgtttgta
     7501 ggtgaaactc aggaaccaac ggaacaggtt ttgccgcatc acggtcggta gcagcaggtg
     7561 tgagatctga ggtttggaga gtgttttccg ttaagccaga gagcatcctc gcagagggga
     7621 gtagcggagg atcgtgatgt aactgccagt gctctgttga agcagctttc cttgctttgt
     7681 tgtcctgctg tttccactga ggatgttgcc cagtattaaa tcaggtcact ttgctttatc
     7741 tgttatctca aggtaactta ccaaatccag ttcacatttt ttccctttct ttgaaacagc
     7801 tttgctttcc tgttttcttt cagtttctct ggaacatcag cattgcatac tctggagcag
     7861 gccactttgt ttgaatcggg gctctgcctc ttactcctat gcatgggcag gtggctatga
     7921 cccgctgtgc ttccatttct cctctggaaa atgggcacag ccactttgcc ctcataggac
     7981 aaagtgagac gacactcagg tgctggcccc tcaggccctc aggcctgtcc ccagtgagcg
     8041 ctccctgcgt gttccctgtt gcacatcagc actggtttgg gctcctgtcc ccctgcttgg
     8101 cactgagtca ccttcctgtc tccattctct gtctctgcga ttcatcctgc actgcctgcc
     8161 aaccagcacg gtcttcctga ctgggaggag gacggaaggt gatttgctcc caacagacag
     8221 ttcagagcac acaggccaca cagttctcag cctctgctcg ggagccacgc tctgctctcg
     8281 gaccccacct tctccctgtt ccttttcttt gtcacccccg gttcagggtc ctcctctgag
     8341 gtgtctgaga gacaggatgt tccattccac cctcgccttc acatctctga ttgagctttt
     8401 cctcctaccc cagtatacgt tcatctgcca acctaaaacc tgtgcaagca gagcttgtct
     8461 cctcctcgaa agcttcctaa atggcctgca ccacctctgg actcctgaaa acttccttga
     8521 taacatagga aacctgtatg tacaaggcat tgcccagtga ggttgaaagc ttcagggggc
     8581 aggggtgctc catacttctt tacaccctcc ttaaatgcag caagtgccga gcatggacgt
     8641 gcccgggaaa tgtgtgtcag ttgaactgct ttatcaaaca gggttgttct tacttcagct
     8701 gttcatattt aggtgagatc agttgatctt ggagcaggag taaactgtgt gtgcccaaca
     8761 ctccttccat gagaaaataa attttaaatg tgtagtggag ggactttcct ggtggtacag
     8821 tggttgggag tccacctgcc aacgcagggg acgtgtgttt gagccctggt ctgggaagat
     8881 cccacatgct gcggagcaac tgagcctgtg caccgcaact gcgaagccca cgtgccacaa
     8941 ctgctgaagc ccgcacgcct agagcccgtg ctctgcagca ggggaggccg ctgcaatgag
     9001 aagcccacgc acctcaacgg agacccaacg cagccaaaaa ttaaaaaaaa aaaaaaaatt
     9061 gtgtagtgga aatgaatatg tagtgattta atttatagaa attatcttta tagcctttgc
     9121 ttctggatca tcattgacct ttcagagtga ggcatctgta gttttaaatg tttacataac
     9181 tttcacataa accctttctg tggtttggtg gatacattta gtgttcatat agtttaatgt
     9241 tacagatcca ccgctgaggt ctcagtgttc taggagaacg gtggtattgt cttcatggaa
     9301 aggcctctag tccgtgttct tggccccgtg tggttaacac cccgccctcc cccatgcggt
     9361 actaggactt tggcctcctg tgccattcgg actagtgagg tttgttccat atgagctagt
     9421 gaagctcatg tttcttgttt ataactgtga ccatctttta caattgtagt gatttccgtt
     9481 atgcctcatc cacatgtgtc ttttcaatct gaaaattaat cttcttactg tcaagttaaa
     9541 tttttttttt aatttaactt gggactgagt ttttaaatat ctcctttttt cttcctttaa
     9601 ggtttttatt taatatttat tttatgacct acttaagaga attctctctc ttgagtgtat
     9661 ttaaattgct tttaagaaat aaatgtactt actatctgtg tagttttgtg atcacaaaaa
     9721 tataaggatt ttaaagcaca tttctcattt tcctttttat tcataatatt ggtagggatt
     9781 tggaatctca aagattagaa caagaacttc agatactgtg accattaagc agcacactca
     9841 cctcagtagc ttggtagtta caggtgcaaa tctgatacag gaaatcagtc ttctgtgaat
     9901 cctggtaaag taaattcttt atctttacat gagcaatcta gaaatttctg cggagaccta
     9961 agagaactta agcctgcatt tcagaaagaa atgtgtgtta catttgtgtg tgtgttacat
    10021 ttttctctca aaaattagtc tcaggaattt agaaacgttt taattatctt actcatattt
    10081 atataggtaa tatgtcaatg aaaaatttga aagatgtttt ttattctgga ttttgctttt
    10141 atttctcatg tttgaatttt attttgctca aaaattaggg tttttttttt tcagtgtgca
    10201 tttgattttt tccgcctgat tctttaaata ctaaaacatc atgattagga atattattgt
    10261 tatgtgagta attttgtcat cacaggtatt catcaaagta atagacacaa atgaccatcg
    10321 tcctcagttt tctacatcaa aatatgaagt tgttattctt gaagacacag caccagaaac
    10381 agaaattttg caaatcagtg ctgtggataa agatgaaaaa aacaaactaa tctacactct
    10441 gcagagcagt atcgatccat tgagtctcaa gaaatttcgc cttgatcctg caactggctc
    10501 tctctataca gcagaaaaac ttgatcatga agccattcag cagcatgttc tcacagtcat
    10561 ggtagggctt tctgttcatt cttctgacac actgtttggt tcctgcaggg ttccatgtga
    10621 ttgagaggga tctttaatca attttaagga aagctttaac aggatcaata atatgctgat
    10681 tcttttaggt acgagatcaa gatgtccctg taaagcgcaa ctttgcacgg attgttgtta
    10741 atgtcagcga caccaatgac cacgccccct ggttcatgag ctcctcctac aaagggcggg
    10801 tttatgaatc agcagctatc ggctcagttg tgttgcaggt tacagctctg gacaaggaca
    10861 aagggaaaaa tgctgaagtg ctgtactcta tcgaatcagg tatttttgga gcactgcttt
    10921 aataactgct tttttttaat aactgctttt ttttatacgt ttataacttt gcacttgtta
    10981 gaaagtatgt tttttctaaa attagttcta gatgttgaaa catttctgtg tatcaaaact
    11041 gcttaaattg atagctacca ttttacatgt taggagaaag aaacagagtt aacttttaat
    11101 tcattggaaa gcaaagctag agagtcctaa ctatgtttgg gtaatgttct tggagattca
    11161 taatattagc ataattcaag gctctgagaa gtcctgcagt aaagaaaact ttatttgacc
    11221 aattcaggat ttccaaaatg gttttaacca cacaatcgtt ttcctccata aactatgaag
    11281 tactcttagg gtaaggctgg cctagtgatt taacattttt tttttagtca gagcatatct
    11341 tctcttgggc agaacaggaa actctgtgac agagtgccaa ctcatccagt tctaattggg
    11401 tcacgtctca taaagggtgt ccatgcctct cctacccctt ccaggctttg cttttctgcc
    11461 actttcaccc ccatgcatct ttcacagttg catttcgttc atggaattgg gttggtacag
    11521 taggtcccag ggttgggacg agggcttgaa gaaatgttga aaaggctaag gggcttgctg
    11581 gagttgggca ggagacagca aagcagggag accagctgga actgtgggcc tggacagctc
    11641 tgggtgtgat agggcaagag gtccagagcc ttgctggtaa ttccaagaag gaggatcacc
    11701 aggaaacggt ggtgacaaag tgaaatgttg ttctgttttc tgtttgatgc tgctattcac
    11761 tcattcattt ctttattccg tggactctca ttttatatgc ccggtgccct gctaggagca
    11821 tttgtacttg tgcttgatag gtaggggtta ccatcggtcc acaaatgtat gtgcttgcaa
    11881 aagaattctg cccctgattg aaacagggat ctgctttagg gcatgtgatt tattcagtca
    11941 gaaatcatct agctttggga cttgcccgac tcgtgccaaa tactatgagt aagtgattaa
    12001 atatcaagaa ggcagcttcc agttttccat ctttctcagt gccattgtca gtacaaaggt
    12061 tagactctca ttctttctct atagtgattt tagaatattg agatcatcca cttaactttt
    12121 tttctgtaag tccatacctc tgcatattta gaaattatgt atcttttctg ggcattagaa
    12181 ttgatagagg tacaattaac tgaagatcat ataatccaaa gctgagcaaa tggagagtac
    12241 ttctttgctt tatcaatgtg ttttatgtgg ttaaactatt ttcatcttaa tatatttgaa
    12301 gtttcatttc tttccctgaa aatgaccaag cttaagccat ccctcacaaa taagacctca
    12361 tatactgccc aaggttgcag tgttaaaatg tgttatagtg tagttagtgc cctgaataaa
    12421 actgattttt ccactggttc agaaatttaa ccattaaaaa cacgcattcc atttgtacgt
    12481 gcctgagcac ttaaataaaa tagttttccc ccctgagaca aacttactgg atttgtgtag
    12541 gagaaaatgt taaactttcc cttagctttc acatagtttt cagcaattgg gcgtttaaaa
    12601 tatgattgtt ggtgcctgac tgaaggcatg cacattcttt aaatgcttgt aatgactgat
    12661 gggattagta atacggtatt ccaagaatgg aactgtgtct ccactcaaag aatagataat
    12721 accaagggcc tattctgata taaactctgg gcttcaaaga agataattgg atagacttgg
    12781 taatgtaaaa atcatgctat acaggttact ttacaggaaa caactaccat taaaatgcag
    12841 ttgaattgta tgtgtgtaaa tctgttgaat agtaggaact ataaaatggt cacacagcct
    12901 tcattcaaca gtgtattcat agtcacctgc ttctgacttg tgtcagattg catttaataa
    12961 agttcaaaag agtagttaca aattcaggct ataacactgc atgattaatt agcaatttat
    13021 ggagcaaaag gtttggtctg atgaggagtc tttagggaaa aaaggaagta attaaagaat
    13081 attttcagta ataattgagt taggtgttaa gagacacatc ggtgccatac tctgggctgt
    13141 agtgttttat ttattttttt aaagtagatg attgttaatt caaaactgtt ataacctctg
    13201 gaaatagaag acactccgta aatgtactta ttgattagaa ttggttttct tccccaaact
    13261 tatgtaaaat gtaattacag ttgaagcttt acagaggttg ccattctgtg gggcagtcag
    13321 catccatggc atgtccaccg tgggaagaga caggtcctgc acacagcttt ctgatgtgcc
    13381 ctttggggtg tacatgtgta atacagtcat agctgacgag cacacatttg catgtttgtc
    13441 cagataactg ccttgttcat atggaaagaa caatttaaaa ctatttagaa ataaccagta
    13501 tctctcctac agtgaatgac taaggcccca acctagtaca gacttctgtc actgccctat
    13561 tagtttgttc acaaatgcca tatgtatatt tcaatatttg gtgaatgtgg ctattactag
    13621 atcagacaag gacacattca agccactcag cagccctcag tgttgccaca gaaatatggt
    13681 gttgctttcc atctgcaaat ctgatggttt ctgctggagt atatgtattg atacaggtag
    13741 gatccatata ctgattaact agctgtgttc ctgtgtaacc ttcttgttat cattgacaag
    13801 ctccgagctg tctttatcaa agtcgagata ctgcaagtaa taaagaatgt tttgaatgtc
    13861 acattgctaa taaaaatttt ttatcagaga tttccaaata gtcatgacac gttccttttg
    13921 ctaatacttt taaatgaagt gccgcatcta acaagtggtt gttggtagtg attgaagtat
    13981 agcataaatg cagggaaaca aaaccaagta gaaatataaa tatggtactt taatgaatgt
    14041 attaattttt ttcaagctgc tgatcaacct gtttggtatt taatttgttt tctttccata
    14101 catgtgtaaa agttgtttca ttcaacaaac atttgctgag tgtctcctat gtgtcaggca
    14161 tttttctagg cagagatgat aaaataatga atcaaacaag ccatgcttaa gtggagctta
    14221 catcctagtg ggagaacaga taagaacaag tgacaatatg tgctgtaaag aaaaaacagg
    14281 gtaatgggac agaaacagcc atgctgaatg gggaggtcaa ggaaggcctc accaccacat
    14341 tctctactaa gaaggaggca tttggcaaaa cctgaatgaa tgaatgcgtg catggagagg
    14401 cagtgagaat agctggcgga agactgttcc aggcagggac ccaccaagcc cagtggttcc
    14461 gagatgagga tgtgctcacg tgattgagga gccttctcat tgcagataaa atccatttat
    14521 tcctccatgt gaggccttgt gtatttgaag ctttaagatt tccactgtac aaagtaaaag
    14581 agaaatgcat ctaggtgact gaatataaaa tatggtaggt cagctgcttt attagtacag
    14641 acatagggta gtaaagagtg ggggtgaaga cagttgtcca gaggttttca cagcccccca
    14701 agcagtcaac cagtcacagc tttggaagtg gggatgatgc aaaggtagct gagaaaggac
    14761 cttggaatcc caataaccaa ctaaaacaca gtgggggaga actggggtca ctggcgctcg
    14821 taggtacaga caggccggaa attagtgtct gcgaggcctg gcagaggcag catgaccccg
    14881 ttcgtgggcc agggttcgtc tcagagcttc gtggcttgga gacattctgg acctctgtcc
    14941 tgttgcaggt tgaggcatgg ccttggggcc tggatgcaga gccaggcaga cttaatgaaa
    15001 accagactgg gtctggcctc agaaagaact atcatggatt tttggaaaat gtattaaagg
    15061 aaggaaatga aagctgtaga ggaagtgttt actagtaatg atgtggagga aggagtgctt
    15121 ggttgagccc ctggtttgca agtcacagca ggtaattctg gtctatgaag cgccgtccgt
    15181 gcttgattgc agacctcgag gaacacagaa tttgagaagg cggttaagtg gcaagtggac
    15241 tttgttttgg gtaaagtgta atagttcaat ttttccaaga tttaaagaaa agtatgtttt
    15301 ataaaaggga ttctttttaa tcactgaata catcattttt attactaaga aacaagttat
    15361 acgtttttcc actataaatt cactctgatg aaagaaagaa tttttaactc ctaacaaatg
    15421 ctacattttc aagatgaaag gagttatcag taggcattct ttcttcttgt ttgaagttgt
    15481 tttcccctca aatatgtcag gtaagctttt aaagactcag gcgtggggag cttcatgatc
    15541 ttccgcctca gcaaggcctg cggcagctcc tcagactaga tcacttcagt tctatgacta
    15601 gaataaatga ttctggactc tgtttataaa acagaaaagg gatgaagggt tcgtggttgg
    15661 atcgaatctg aggaccctca cactgccttg atctacccag aaagagagta aactgcagaa
    15721 ctgtagtaaa ctcctggttt caggaagagc tcaagtggca caaaactatg gaatgttgtg
    15781 gagttgcatt tgcagctaaa tacatgtaca taacgtagct ggaaaatgtc taaagaaaag
    15841 caagtaaaac aatcttaaga gttttcagcc tcagcaatat tgacattttg caccagaaag
    15901 ttctttgctg tggggctgtc ctgtgcattg tggtatgttt agcagcatcc ctggcctcta
    15961 ctcactagag gttaggagca ccctctcccc acaagtaggg gtcaccaaaa aggggtccag
    16021 acacggttga atgtccctct gggtgaaagc acctccagtt gagaaccact cacctagaaa
    16081 ttaaattgac ctgaaaaaat tcaggggata ttactgaaat cttgaaaaaa aaacccataa
    16141 agtggggcag agtacacaca ggcttactca tcaagtcccc gaatgcataa aataagggcc
    16201 aactctattt aagttgttaa atttaattga agtcttccct tttcatagtg ggtaagattc
    16261 ttgagagttt gcaagtgata aataaatata ttccaaaggg gttttgaggg actcttggag
    16321 atgattaact aaactctttt atggaaggat aaccagatcc ttccacaaca cattcctgat
    16381 tcaaccagag agagtaactt ttggctttag gtacagagtg atattacttc tgtttctttt
    16441 cataatctat agacaaaaca gaaaagtttg cccttaga
//
LOCUS       XM_032618476           15879 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FAT atypical cadherin 1 (FAT1),
            transcript variant X8, mRNA.
ACCESSION   XM_032618476
VERSION     XM_032618476.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15879
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15879
                     /gene="FAT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 45 long SRA reads, 3 Proteins, and
                     70% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746777"
     CDS             853..5283
                     /gene="FAT1"
                     /codon_start=1
                     /product="protocadherin Fat 1 isoform X5"
                     /protein_id="XP_032474367.1"
                     /db_xref="GeneID:116746777"
                     /translation="MGRHLASLLLLLLLQHFGDSDGSQALEQTPVQFTHFQYNVTVHE
                     NSAAKTYVGHPVKMGIYITNPLWELRYKIVSGDNENLFKAEEYILGDFCFLRIRTKGG
                     NTAILNREVKDHYTLIVKAVEKNTNMEARTKVRVQVLDTNDLRPLFSPTSYSVSLPEN
                     TALRTSIARVSATDADIGTNGEFYYSFKDRTDMFAIHPTSGTIVLTGRLDYTETKFYE
                     MEILAVDRGMKLYGSSGISSMAKLTVHVEQANECAPVLTAVTLSPSELEKDPTYAIIT
                     VEDCDQGANGEVASLSIVAGDLLQQFRTVRTSPGSKEYKLKAVGDIDWDSHPFGYNLT
                     LQAKDKGSPPQFSSVKVIQVTSPRFKAGPVKFEKEVYRAEISEFAPPSTPVVTVKATP
                     SYSHLKYVFKSTPGKAKFSLNHNTGLISILEPIKRQQASQFELEVTTSDRKASTKVLV
                     KVLSANSHPPEFTQTAYKASFDENVPIGTTVMSVSAIDPDEGENGYVTYSIANLNHVP
                     FVINHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEILATLTLNNLNDNTP
                     LFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVRYQTEAGNELDLFSLNPSSGVLS
                     LKQSLMNGLGAKVSFHSLRITATDGENFATPLYINITVAALRKPVNLHCEETGVARML
                     AEKLLQANKLHSQGEVEDVFFDSHSVNAHTPQFRSTLPAGIEVKENHPVGSSIIFMNA
                     TDLDTGFNGKLVYAISGGNEDSCFIIDMETGMLKILSPLDRETTDRYTLNVTVSDLGL
                     PQKAAWRLLEIRVLDANDNPPEFLQENYFVEVSEDKEINSEIIQVEATDKDLGPNGHV
                     TYSLLTDTDKFSIDSTTGVVKIVNPLDREEQHVHYVKIEARDQAREEPQLLSMVLLKV
                     SLEDVNDNPPKFIPPNYRVKVREDLPEGTIIMWLETYDPDLSQSSQVRYSLMDHGEGN
                     FDVDKLSGAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYIEVEVIDVNENLHP
                     PVFPSFVEKGVVKENVPVGSSVMKVSAHDEDTGRDGEIHYSIRDGSGVGVFKIDEETG
                     VIETSGRLDRESTSHYWLTVYASDQGVVPLSSFVEVYIELEDVNDNAPQTSEPVYYPE
                     IMENSPKDVSVVQIEAFDPDSSSDDKLTYKITSGNPQGFFSINPKTGLITTTSRKLDR
                     EQQGEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQKFYKIRLPEREKPERE
                     RNTKREPLYRVIATDKDEGPNAEISYSIEEGNEHGKFFIEPKTGVVLSKKFSGAGEYD
                     ILSIKAVDNGRPQKSSTTRLHIEWISKPKPSPEPISFEESFFTFTVMESDPVAHMIGV
                     IAVEPPGIPLWFDIIGGNYDSHFDVDKGTGTIIIAKPLDAEQKSNYNLTVEATDGTTT
                     ILTQVGKLLMIQCSDLSVHRQYEQLILPSEVLKSDVTILI"
     misc_feature    961..1281
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(982..987,1174..1176,1180..1182,1270..1272,
                     1276..1281)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1306..1605
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1327..1332,1480..1482,1486..1488,1594..1596,
                     1600..1605)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    1669..1917
                     /gene="FAT1"
                     /note="Cadherin repeat-like domain; Region: CA_like;
                     cl46864"
                     /db_xref="CDD:481204"
     misc_feature    1960..2226
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(1981..1986,2128..2130,2134..2136,2212..2214,
                     2218..2223)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2251..2544
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(2269..2274,2425..2427,2431..2433,2530..2532,
                     2536..2541)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    2572..2838
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    3019..3303
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3031..3036,3190..3192,3196..3198,3289..3291,
                     3295..3300)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3328..3618
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3346..3351,3499..3501,3505..3507,3604..3606,
                     3610..3615)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3643..3933
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3661..3666,3817..3819,3823..3825,3919..3921,
                     3925..3930)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    3976..4254
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(3982..3987,4141..4143,4147..4149,4240..4242,
                     4246..4251)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4276..4572
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    order(4297..4302,4459..4461,4465..4467,4558..4560,
                     4564..4569)
                     /gene="FAT1"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:206637"
     misc_feature    4597..4881
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
     misc_feature    4936..5169
                     /gene="FAT1"
                     /note="Cadherin tandem repeat domain; Region:
                     Cadherin_repeat; cd11304"
                     /db_xref="CDD:206637"
ORIGIN      
        1 gcaagtcttt ccgtatttaa gtttaaacgt taatgaaatt gcgtggggtg tttgactagt
       61 acagggaagc gtgtgcatcc taccggcttt ccgctcggcg agctgcacac ccgccctggc
      121 cgtgcttgac tcgggaatga aagatcagta tgcataggtt ttggaattca taaaatactt
      181 acaaagcact gttcaaaaga acttgaaaag ctatgctgtt tgtgcattat ttcaaatgta
      241 acttattata gaaatggtgc ccagggaggg cgcattgggt gccccgtgat ctgcagtggc
      301 gcagcgccct ctagtccggg cacccggcaa agcgcgcgct ctccgcacgg acggcgaact
      361 tggacctgcc gggcgctctt gggacgtgga cgtgaggtcc gtcgccgtca ccctagcctt
      421 cacttaccac ccactccggc ccattctata tctaatatac aaataccagc ttgggtggac
      481 tggatgcaga ggcagtgctg gcggaaagct ttttttgttt tcgggaaccc atcccccaaa
      541 ttttctagag cctttgggta ctgggttagg gaggatcgac tattgagagg acaaacgtga
      601 agcttgtact acatttcttg ttcatgtgaa ggtaattagc tggtagcaaa aaggcacctc
      661 tgtttcgttc cgttggggct aaaggatcag taaaaacgtg gcagcaccgg actgagaaat
      721 ctccatctct ggctctcggc tgttcctctg gcgacgaagt gcaacttctt tcaggcaatt
      781 aggttttcag tggacccggc aaactgggat tcccaaacag atgttttagt ccaagttcct
      841 gggagttaag cgatggggag gcatttggcc tcgcttctgc ttttgctcct cctccagcat
      901 tttggagaca gtgatggaag ccaagcactt gaacaaactc ctgtacagtt cacacatttc
      961 cagtacaatg tcacagtgca tgaaaattct gcagcaaaga cctatgttgg gcatcccgta
     1021 aagatgggta tttacattac aaatccactg tgggagttaa ggtacaaaat tgtctcagga
     1081 gacaatgaaa acctattcaa agctgaagag tacattcttg gagacttttg ctttctgaga
     1141 ataaggacca aaggaggaaa tacagctatt cttaatagag aagtgaaaga ccattacacg
     1201 ttgatagtca aagcagttga aaaaaatact aatatggaag cacgaacaaa ggtcagggta
     1261 caagtgctgg atacaaatga cttgaggcca ttattctcac ccacctcgta cagtgtttct
     1321 ttacctgaaa acacagccct gaggaccagt attgcaagag tcagtgccac ggatgcagac
     1381 ataggcacca atggagaatt ttactacagt tttaaagacc gaacagacat gtttgctatc
     1441 caccccacca gtggcaccat agttttaact ggtagacttg actacacaga gaccaagttc
     1501 tatgagatgg aaattcttgc tgtggaccgt ggcatgaaat tgtacgggag cagtggtatc
     1561 agcagcatgg ctaagctgac agttcacgta gagcaggcca acgagtgtgc tcctgtgtta
     1621 acagcagtga cgttatcacc atcggaattg gagaaggacc caacgtatgc catcataacc
     1681 gtggaggact gcgatcaggg tgccaatggg gaagtcgctt ctttaagcat tgtggcagga
     1741 gacctccttc agcagtttag aacagtgagg acctctccag ggagcaaaga gtataaactc
     1801 aaagcagtcg gtgacattga ttgggacagt catcctttcg gctacaacct gacactacag
     1861 gcgaaagata aaggaagtcc tccccagttc tcttctgtaa aagtaattca ggtgacttca
     1921 ccacggttca aagctgggcc agtcaagttt gaaaaggagg tttacagagc agaaataagt
     1981 gaatttgctc ctcccagcac acccgtggtc acggtgaaag ccacacctag ctattctcat
     2041 ttgaagtatg tttttaaaag tacacctgga aaagctaaat tcagtttaaa tcacaacact
     2101 ggtctcattt ccattttaga accaattaaa agacagcaag cctcccagtt tgaacttgaa
     2161 gtaacaacaa gtgacagaaa agcctcgacc aaagtcttgg ttaaagtctt gagtgcaaat
     2221 agccatcccc ctgaatttac ccagacagcc tacaaagcat cttttgacga gaacgtgccc
     2281 attggtacta cggtgatgag tgtgagtgct atagaccctg atgagggtga gaacgggtat
     2341 gtgacgtaca gcattgcaaa tttgaatcat gtgccgtttg tgattaacca tttcaccggt
     2401 gctgtgagta cttcagagaa cttggactat gagctgatgc cacgggttta tactctaagg
     2461 attcgggcat cagactgggg cttgccatac cgccgggagg ttgaaatcct tgctaccctc
     2521 actctcaata acttgaatga caacacaccc ctgtttgaga agataaactg tgaaggaaca
     2581 attcccaggg acctaggtgt aggggagcag ataaccactg tttctgccat tgacgcggat
     2641 gaactgcagt tggtgcggta tcagactgaa gctgggaatg aactggattt gttcagctta
     2701 aaccccagct ccggggtatt gtcattaaag cagtcgctca tgaatggttt aggggcaaag
     2761 gtgtcatttc acagtctgag aattacagct acagatggag agaattttgc cacaccatta
     2821 tacatcaaca taactgtggc tgcccttcgc aagccagtaa acttgcactg cgaggagact
     2881 ggtgtggcca ggatgctggc agagaaactc ctgcaggcca ataagttaca cagtcaggga
     2941 gaggttgagg atgtcttctt tgattctcac tctgtcaatg ctcacacacc acagtttaga
     3001 agtacccttc cagctggtat tgaggtgaag gaaaatcatc ccgtgggttc cagcataatt
     3061 ttcatgaatg ctactgacct ggacactggc ttcaacggaa aactggtcta tgctatttct
     3121 ggaggaaatg aggatagttg cttcattatt gacatggaaa caggaatgct caaaatttta
     3181 tccccgcttg accgtgaaac aacagacaga tataccctga atgttacggt gtctgacctc
     3241 ggtctgccac agaaggctgc ttggcgtctt ctggagatca gagttctgga tgccaatgat
     3301 aacccacctg agtttttaca ggagaactat ttcgttgaag tgagtgaaga caaagagata
     3361 aatagtgaaa tcatccaggt tgaagccaca gataaagatc tggggcccaa tggacatgtg
     3421 acatactctc ttcttacaga cacagataaa ttttcaattg acagcacaac tggagtggtg
     3481 aaaatcgtga accccttgga tcgtgaagaa cagcacgtgc attacgtaaa gattgaagcc
     3541 agggatcaag ccagagaaga accgcagctg ctttccatgg tgcttctgaa ggtatcatta
     3601 gaggatgtta atgacaaccc acccaagttt attcccccta attaccgtgt gaaagttcga
     3661 gaggaccttc cagaaggaac cataatcatg tggttagaga cctatgatcc tgatttaagt
     3721 cagtctagtc aggtgagata cagtcttatg gaccacggag aaggaaactt tgatgtggat
     3781 aagctcagtg gagcagttag aatcatacag cagttggact ttgagaagaa gcaagtgtat
     3841 aatctcactg tgagggccaa agacaaaggg aagcccattt ctctgtcttc cacttgctac
     3901 attgaagttg aagtcatcga tgtgaatgag aacttacacc caccagtgtt tcctagcttt
     3961 gtggaaaagg gtgtagtgaa agaaaatgtc cctgttggtt catcagtgat gaaggtatca
     4021 gctcatgatg aggacacagg aagagatggg gagatccact attccattcg agatggttct
     4081 ggtgttggtg ttttcaaaat agatgaagaa acaggtgtta tagagacttc aggtcgactg
     4141 gaccgcgagt ccacctccca ttactggcta acggtctacg cgtctgatca gggcgtcgtg
     4201 cccctttcct cctttgtaga ggtctatata gagctggagg atgtgaacga caatgcaccg
     4261 cagacttcag agcctgttta ttatccggaa ataatggaaa actctcccaa ggatgtgtct
     4321 gtggtccaga ttgaggcatt tgatccagat tctagctccg atgacaagtt gacatacaaa
     4381 attacaagtg gaaatccaca aggatttttt tcaataaatc ctaagacagg tctcatcacg
     4441 actacatcca ggaaactaga ccgtgagcag caaggtgaac acatattaga agttacagtg
     4501 acagacaatg gtagtccccc caagtcaacc attgcaagag taattgtgaa gatccttgac
     4561 gaaaatgaca acaagcctca gttcctgcag aagttctaca aaatcagact cccagagcgg
     4621 gaaaaaccag aacgagaaag aaacaccaag cgcgagcctt tatatcgtgt tatagctaca
     4681 gacaaagatg aaggtcccaa tgcagaaatc tcctatagca ttgaagaggg aaatgaacat
     4741 ggcaaatttt ttattgagcc aaaaactgga gtggttttgt ccaagaagtt ttctggagct
     4801 ggagaatatg atattctttc aattaaggca gttgataatg gtcgccccca aaagtcatca
     4861 accactcgac tccatattga atggatctcc aaacccaaac cgtccccgga gccaatttca
     4921 tttgaagaat cattttttac ctttactgta atggaaagcg atccagttgc tcacatgatt
     4981 ggagtaatag ctgttgagcc tccaggcata cctctttggt ttgacatcat tggtggcaac
     5041 tatgatagtc actttgatgt ggacaagggc actggaacca tcattattgc caaacctctt
     5101 gatgcagaac aaaaatcaaa ctacaatctc acagtcgagg ctacagatgg aaccaccact
     5161 atactgactc aggtaggcaa attgctgatg atacagtgtt ctgatctaag tgtccacagg
     5221 caatatgaac aattgattct gccctctgag gttctcaaat cagacgttac tattttgata
     5281 tagtttatgc acatgtacac agcaaggatt tttatttagg gaatgaaata tcactgcaaa
     5341 tcctgtttta ggttttgaat gtaattaacc agttttgaaa actttgaaag aagacttgaa
     5401 aaaaaaaaaa cacgatatgc catcagaatc ttttattttt acgctcattt tgaattgtac
     5461 tagtataaag tatatcactg tcaaggatga cttgtccaag tcatttgcat taaaactggt
     5521 taaagtgatt aattatcttt taaaacactt ttttgggttt ttcccccctt gactacctta
     5581 ggctgtgtaa aataactgat aaaactgttc tattccttta aatatctttg ttcctatctg
     5641 atgattaaga catggtccga ttactggcat ttcaaattga aatgtcagaa ccctataaat
     5701 tacgtttaag ttctgttctt tcttatcagt ttctctgatt cacagtgggg gctgtttgag
     5761 aacttcttaa atacttgctg tgtgccaggt attgttctag aagctgagta gtaggaaaca
     5821 aaatcctgcc ctcttggagt ttacattaca atgataaagc caaagcctcg tgtttaatgt
     5881 gctgtgtgtg aaaagtaaaa ggaagaaatt aaatgttaga ggataaaatg cttctgaatt
     5941 ccaatttcct atctttagat tatactattt taaatcttaa gacagatcat ttgctaaatc
     6001 atttagttgc attgaagaat aaaaattagt ctgtgttgtc ttttcaatta ataaatgaat
     6061 agataattta aagtcagttg tgaaatgacc ttatttcttt gtccaaatgc ttgtgatttt
     6121 taatgtattt taaattgata atatgaatca tgctttgggg tcattttgag gttgtcatgt
     6181 gaaagtacca gcacagtatt aaaatttcag ccttgtcagt aactgttctc attgtagaaa
     6241 ctagacttta gagcatgaaa atgagaagaa aagcatcaag aattgtaata aattgagcag
     6301 ggtaattctg aaaggttaaa gagtgtaact gtatgtagat cagttcaagt aattgactaa
     6361 ccggaagtct agcaaaggga acttaataac cagtagaaat gaccctctgt gccaagcctt
     6421 ctcattacta aagatgatat atctacctgt agcatttatc acttactaca taactcacag
     6481 taagtgtagt tttcattagt atagttaaga gcttagtatg aaatacagtg actaaaattc
     6541 ccataaaacc cagtaaatat attctctcag ggacacagaa tttcttcaat ttcaatgctt
     6601 cgggcatact tctctaactt attttgagtc attttcagag ggtcttgata atatcctagt
     6661 gaattgctgg cagggagagg tagagtatca gagagcggtc cagatcccag gctgacctgt
     6721 ccaggtgtgg gtcattaggg aacaatgaca agtaattagg ttttgattcc cagtctgggg
     6781 ctgagaacag ggagatagga atctgagtgg gaggagagca gcaaatacca gctgaagagg
     6841 gacacagatc agaacccagc tgacaaggca ctggaacaca gcaggtagat tcctgtttgt
     6901 aggtgaaact caggaaccaa cggaacaggt tttgccgcat cacggtcggt agcagcaggt
     6961 gtgagatctg aggtttggag agtgttttcc gttaagccag agagcatcct cgcagagggg
     7021 agtagcggag gatcgtgatg taactgccag tgctctgttg aagcagcttt ccttgctttg
     7081 ttgtcctgct gtttccactg aggatgttgc ccagtattaa atcaggtcac tttgctttat
     7141 ctgttatctc aaggtaactt accaaatcca gttcacattt tttccctttc tttgaaacag
     7201 ctttgctttc ctgttttctt tcagtttctc tggaacatca gcattgcata ctctggagca
     7261 ggccactttg tttgaatcgg ggctctgcct cttactccta tgcatgggca ggtggctatg
     7321 acccgctgtg cttccatttc tcctctggaa aatgggcaca gccactttgc cctcatagga
     7381 caaagtgaga cgacactcag gtgctggccc ctcaggccct caggcctgtc cccagtgagc
     7441 gctccctgcg tgttccctgt tgcacatcag cactggtttg ggctcctgtc cccctgcttg
     7501 gcactgagtc accttcctgt ctccattctc tgtctctgcg attcatcctg cactgcctgc
     7561 caaccagcac ggtcttcctg actgggagga ggacggaagg tgatttgctc ccaacagaca
     7621 gttcagagca cacaggccac acagttctca gcctctgctc gggagccacg ctctgctctc
     7681 ggaccccacc ttctccctgt tccttttctt tgtcaccccc ggttcagggt cctcctctga
     7741 ggtgtctgag agacaggatg ttccattcca ccctcgcctt cacatctctg attgagcttt
     7801 tcctcctacc ccagtatacg ttcatctgcc aacctaaaac ctgtgcaagc agagcttgtc
     7861 tcctcctcga aagcttccta aatggcctgc accacctctg gactcctgaa aacttccttg
     7921 ataacatagg aaacctgtat gtacaaggca ttgcccagtg aggttgaaag cttcaggggg
     7981 caggggtgct ccatacttct ttacaccctc cttaaatgca gcaagtgccg agcatggacg
     8041 tgcccgggaa atgtgtgtca gttgaactgc tttatcaaac agggttgttc ttacttcagc
     8101 tgttcatatt taggtgagat cagttgatct tggagcagga gtaaactgtg tgtgcccaac
     8161 actccttcca tgagaaaata aattttaaat gtgtagtgga gggactttcc tggtggtaca
     8221 gtggttggga gtccacctgc caacgcaggg gacgtgtgtt tgagccctgg tctgggaaga
     8281 tcccacatgc tgcggagcaa ctgagcctgt gcaccgcaac tgcgaagccc acgtgccaca
     8341 actgctgaag cccgcacgcc tagagcccgt gctctgcagc aggggaggcc gctgcaatga
     8401 gaagcccacg cacctcaacg gagacccaac gcagccaaaa attaaaaaaa aaaaaaaaat
     8461 tgtgtagtgg aaatgaatat gtagtgattt aatttataga aattatcttt atagcctttg
     8521 cttctggatc atcattgacc tttcagagtg aggcatctgt agttttaaat gtttacataa
     8581 ctttcacata aaccctttct gtggtttggt ggatacattt agtgttcata tagtttaatg
     8641 ttacagatcc accgctgagg tctcagtgtt ctaggagaac ggtggtattg tcttcatgga
     8701 aaggcctcta gtccgtgttc ttggccccgt gtggttaaca ccccgccctc ccccatgcgg
     8761 tactaggact ttggcctcct gtgccattcg gactagtgag gtttgttcca tatgagctag
     8821 tgaagctcat gtttcttgtt tataactgtg accatctttt acaattgtag tgatttccgt
     8881 tatgcctcat ccacatgtgt cttttcaatc tgaaaattaa tcttcttact gtcaagttaa
     8941 attttttttt taatttaact tgggactgag tttttaaata tctccttttt tcttccttta
     9001 aggtttttat ttaatattta ttttatgacc tacttaagag aattctctct cttgagtgta
     9061 tttaaattgc ttttaagaaa taaatgtact tactatctgt gtagttttgt gatcacaaaa
     9121 atataaggat tttaaagcac atttctcatt ttccttttta ttcataatat tggtagggat
     9181 ttggaatctc aaagattaga acaagaactt cagatactgt gaccattaag cagcacactc
     9241 acctcagtag cttggtagtt acaggtgcaa atctgataca ggaaatcagt cttctgtgaa
     9301 tcctggtaaa gtaaattctt tatctttaca tgagcaatct agaaatttct gcggagacct
     9361 aagagaactt aagcctgcat ttcagaaaga aatgtgtgtt acatttgtgt gtgtgttaca
     9421 tttttctctc aaaaattagt ctcaggaatt tagaaacgtt ttaattatct tactcatatt
     9481 tatataggta atatgtcaat gaaaaatttg aaagatgttt tttattctgg attttgcttt
     9541 tatttctcat gtttgaattt tattttgctc aaaaattagg gttttttttt ttcagtgtgc
     9601 atttgatttt ttccgcctga ttctttaaat actaaaacat catgattagg aatattattg
     9661 ttatgtgagt aattttgtca tcacaggtat tcatcaaagt aatagacaca aatgaccatc
     9721 gtcctcagtt ttctacatca aaatatgaag ttgttattct tgaagacaca gcaccagaaa
     9781 cagaaatttt gcaaatcagt gctgtggata aagatgaaaa aaacaaacta atctacactc
     9841 tgcagagcag tatcgatcca ttgagtctca agaaatttcg ccttgatcct gcaactggct
     9901 ctctctatac agcagaaaaa cttgatcatg aagccattca gcagcatgtt ctcacagtca
     9961 tggtagggct ttctgttcat tcttctgaca cactgtttgg ttcctgcagg gttccatgtg
    10021 attgagaggg atctttaatc aattttaagg aaagctttaa caggatcaat aatatgctga
    10081 ttcttttagg tacgagatca agatgtccct gtaaagcgca actttgcacg gattgttgtt
    10141 aatgtcagcg acaccaatga ccacgccccc tggttcatga gctcctccta caaagggcgg
    10201 gtttatgaat cagcagctat cggctcagtt gtgttgcagg ttacagctct ggacaaggac
    10261 aaagggaaaa atgctgaagt gctgtactct atcgaatcag gtatttttgg agcactgctt
    10321 taataactgc ttttttttaa taactgcttt tttttatacg tttataactt tgcacttgtt
    10381 agaaagtatg ttttttctaa aattagttct agatgttgaa acatttctgt gtatcaaaac
    10441 tgcttaaatt gatagctacc attttacatg ttaggagaaa gaaacagagt taacttttaa
    10501 ttcattggaa agcaaagcta gagagtccta actatgtttg ggtaatgttc ttggagattc
    10561 ataatattag cataattcaa ggctctgaga agtcctgcag taaagaaaac tttatttgac
    10621 caattcagga tttccaaaat ggttttaacc acacaatcgt tttcctccat aaactatgaa
    10681 gtactcttag ggtaaggctg gcctagtgat ttaacatttt ttttttagtc agagcatatc
    10741 ttctcttggg cagaacagga aactctgtga cagagtgcca actcatccag ttctaattgg
    10801 gtcacgtctc ataaagggtg tccatgcctc tcctacccct tccaggcttt gcttttctgc
    10861 cactttcacc cccatgcatc tttcacagtt gcatttcgtt catggaattg ggttggtaca
    10921 gtaggtccca gggttgggac gagggcttga agaaatgttg aaaaggctaa ggggcttgct
    10981 ggagttgggc aggagacagc aaagcaggga gaccagctgg aactgtgggc ctggacagct
    11041 ctgggtgtga tagggcaaga ggtccagagc cttgctggta attccaagaa ggaggatcac
    11101 caggaaacgg tggtgacaaa gtgaaatgtt gttctgtttt ctgtttgatg ctgctattca
    11161 ctcattcatt tctttattcc gtggactctc attttatatg cccggtgccc tgctaggagc
    11221 atttgtactt gtgcttgata ggtaggggtt accatcggtc cacaaatgta tgtgcttgca
    11281 aaagaattct gcccctgatt gaaacaggga tctgctttag ggcatgtgat ttattcagtc
    11341 agaaatcatc tagctttggg acttgcccga ctcgtgccaa atactatgag taagtgatta
    11401 aatatcaaga aggcagcttc cagttttcca tctttctcag tgccattgtc agtacaaagg
    11461 ttagactctc attctttctc tatagtgatt ttagaatatt gagatcatcc acttaacttt
    11521 ttttctgtaa gtccatacct ctgcatattt agaaattatg tatcttttct gggcattaga
    11581 attgatagag gtacaattaa ctgaagatca tataatccaa agctgagcaa atggagagta
    11641 cttctttgct ttatcaatgt gttttatgtg gttaaactat tttcatctta atatatttga
    11701 agtttcattt ctttccctga aaatgaccaa gcttaagcca tccctcacaa ataagacctc
    11761 atatactgcc caaggttgca gtgttaaaat gtgttatagt gtagttagtg ccctgaataa
    11821 aactgatttt tccactggtt cagaaattta accattaaaa acacgcattc catttgtacg
    11881 tgcctgagca cttaaataaa atagttttcc cccctgagac aaacttactg gatttgtgta
    11941 ggagaaaatg ttaaactttc ccttagcttt cacatagttt tcagcaattg ggcgtttaaa
    12001 atatgattgt tggtgcctga ctgaaggcat gcacattctt taaatgcttg taatgactga
    12061 tgggattagt aatacggtat tccaagaatg gaactgtgtc tccactcaaa gaatagataa
    12121 taccaagggc ctattctgat ataaactctg ggcttcaaag aagataattg gatagacttg
    12181 gtaatgtaaa aatcatgcta tacaggttac tttacaggaa acaactacca ttaaaatgca
    12241 gttgaattgt atgtgtgtaa atctgttgaa tagtaggaac tataaaatgg tcacacagcc
    12301 ttcattcaac agtgtattca tagtcacctg cttctgactt gtgtcagatt gcatttaata
    12361 aagttcaaaa gagtagttac aaattcaggc tataacactg catgattaat tagcaattta
    12421 tggagcaaaa ggtttggtct gatgaggagt ctttagggaa aaaaggaagt aattaaagaa
    12481 tattttcagt aataattgag ttaggtgtta agagacacat cggtgccata ctctgggctg
    12541 tagtgtttta tttatttttt taaagtagat gattgttaat tcaaaactgt tataacctct
    12601 ggaaatagaa gacactccgt aaatgtactt attgattaga attggttttc ttccccaaac
    12661 ttatgtaaaa tgtaattaca gttgaagctt tacagaggtt gccattctgt ggggcagtca
    12721 gcatccatgg catgtccacc gtgggaagag acaggtcctg cacacagctt tctgatgtgc
    12781 cctttggggt gtacatgtgt aatacagtca tagctgacga gcacacattt gcatgtttgt
    12841 ccagataact gccttgttca tatggaaaga acaatttaaa actatttaga aataaccagt
    12901 atctctccta cagtgaatga ctaaggcccc aacctagtac agacttctgt cactgcccta
    12961 ttagtttgtt cacaaatgcc atatgtatat ttcaatattt ggtgaatgtg gctattacta
    13021 gatcagacaa ggacacattc aagccactca gcagccctca gtgttgccac agaaatatgg
    13081 tgttgctttc catctgcaaa tctgatggtt tctgctggag tatatgtatt gatacaggta
    13141 ggatccatat actgattaac tagctgtgtt cctgtgtaac cttcttgtta tcattgacaa
    13201 gctccgagct gtctttatca aagtcgagat actgcaagta ataaagaatg ttttgaatgt
    13261 cacattgcta ataaaaattt tttatcagag atttccaaat agtcatgaca cgttcctttt
    13321 gctaatactt ttaaatgaag tgccgcatct aacaagtggt tgttggtagt gattgaagta
    13381 tagcataaat gcagggaaac aaaaccaagt agaaatataa atatggtact ttaatgaatg
    13441 tattaatttt tttcaagctg ctgatcaacc tgtttggtat ttaatttgtt ttctttccat
    13501 acatgtgtaa aagttgtttc attcaacaaa catttgctga gtgtctccta tgtgtcaggc
    13561 atttttctag gcagagatga taaaataatg aatcaaacaa gccatgctta agtggagctt
    13621 acatcctagt gggagaacag ataagaacaa gtgacaatat gtgctgtaaa gaaaaaacag
    13681 ggtaatggga cagaaacagc catgctgaat ggggaggtca aggaaggcct caccaccaca
    13741 ttctctacta agaaggaggc atttggcaaa acctgaatga atgaatgcgt gcatggagag
    13801 gcagtgagaa tagctggcgg aagactgttc caggcaggga cccaccaagc ccagtggttc
    13861 cgagatgagg atgtgctcac gtgattgagg agccttctca ttgcagataa aatccattta
    13921 ttcctccatg tgaggccttg tgtatttgaa gctttaagat ttccactgta caaagtaaaa
    13981 gagaaatgca tctaggtgac tgaatataaa atatggtagg tcagctgctt tattagtaca
    14041 gacatagggt agtaaagagt gggggtgaag acagttgtcc agaggttttc acagcccccc
    14101 aagcagtcaa ccagtcacag ctttggaagt ggggatgatg caaaggtagc tgagaaagga
    14161 ccttggaatc ccaataacca actaaaacac agtgggggag aactggggtc actggcgctc
    14221 gtaggtacag acaggccgga aattagtgtc tgcgaggcct ggcagaggca gcatgacccc
    14281 gttcgtgggc cagggttcgt ctcagagctt cgtggcttgg agacattctg gacctctgtc
    14341 ctgttgcagg ttgaggcatg gccttggggc ctggatgcag agccaggcag acttaatgaa
    14401 aaccagactg ggtctggcct cagaaagaac tatcatggat ttttggaaaa tgtattaaag
    14461 gaaggaaatg aaagctgtag aggaagtgtt tactagtaat gatgtggagg aaggagtgct
    14521 tggttgagcc cctggtttgc aagtcacagc aggtaattct ggtctatgaa gcgccgtccg
    14581 tgcttgattg cagacctcga ggaacacaga atttgagaag gcggttaagt ggcaagtgga
    14641 ctttgttttg ggtaaagtgt aatagttcaa tttttccaag atttaaagaa aagtatgttt
    14701 tataaaaggg attcttttta atcactgaat acatcatttt tattactaag aaacaagtta
    14761 tacgtttttc cactataaat tcactctgat gaaagaaaga atttttaact cctaacaaat
    14821 gctacatttt caagatgaaa ggagttatca gtaggcattc tttcttcttg tttgaagttg
    14881 ttttcccctc aaatatgtca ggtaagcttt taaagactca ggcgtgggga gcttcatgat
    14941 cttccgcctc agcaaggcct gcggcagctc ctcagactag atcacttcag ttctatgact
    15001 agaataaatg attctggact ctgtttataa aacagaaaag ggatgaaggg ttcgtggttg
    15061 gatcgaatct gaggaccctc acactgcctt gatctaccca gaaagagagt aaactgcaga
    15121 actgtagtaa actcctggtt tcaggaagag ctcaagtggc acaaaactat ggaatgttgt
    15181 ggagttgcat ttgcagctaa atacatgtac ataacgtagc tggaaaatgt ctaaagaaaa
    15241 gcaagtaaaa caatcttaag agttttcagc ctcagcaata ttgacatttt gcaccagaaa
    15301 gttctttgct gtggggctgt cctgtgcatt gtggtatgtt tagcagcatc cctggcctct
    15361 actcactaga ggttaggagc accctctccc cacaagtagg ggtcaccaaa aaggggtcca
    15421 gacacggttg aatgtccctc tgggtgaaag cacctccagt tgagaaccac tcacctagaa
    15481 attaaattga cctgaaaaaa ttcaggggat attactgaaa tcttgaaaaa aaaacccata
    15541 aagtggggca gagtacacac aggcttactc atcaagtccc cgaatgcata aaataagggc
    15601 caactctatt taagttgtta aatttaattg aagtcttccc ttttcatagt gggtaagatt
    15661 cttgagagtt tgcaagtgat aaataaatat attccaaagg ggttttgagg gactcttgga
    15721 gatgattaac taaactcttt tatggaagga taaccagatc cttccacaac acattcctga
    15781 ttcaaccaga gagagtaact tttggcttta ggtacagagt gatattactt ctgtttcttt
    15841 tcataatcta tagacaaaac agaaaagttt gcccttaga
//
LOCUS       XM_032618477            8991 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus teneurin transmembrane protein 3 (TENM3),
            transcript variant X1, mRNA.
ACCESSION   XM_032618477
VERSION     XM_032618477.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8991
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8991
                     /gene="TENM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746779"
     CDS             22..8142
                     /gene="TENM3"
                     /codon_start=1
                     /product="teneurin-3 isoform X1"
                     /protein_id="XP_032474368.1"
                     /db_xref="GeneID:116746779"
                     /translation="MDVKERRPYCSLTKNRRERERRCANSSADSAECRVPTQKSYSSS
                     ETLKAFDHDSSRLLYGNRVKDLVHREADEFTRRGQNFTLRQLGVCEPEARRGLTFCAE
                     MGLPHRGYSISAGSDADTENEAVMSPEHAMRLWGRGVKSGRSSCLSSRSNSALTLTDT
                     EHENKSDSENEQPANNQGQSTLQPLPPSHKQHSAQHHPSITSLNRNSLTNRRNQSPAP
                     PAALPAELQTTPESVQLQDSWVLGSNVPLESRHFLFKTGTGTTPLFSTATPGYTMASG
                     SVYSPPTRPLPRNTLSRSAFKFKKSSKYCSWKCTALCAVGVSVLLAILLSYFIAMHLF
                     GLNWQLQQTENDTFENGKVNSDTMPTNTVSLPSGDNGRLGGFTQENNTIDSGELDIGR
                     RAIQEVPPGIFWRSQLLIDQPQFLKFNISLQKDALIGVYGRKGLPPSHTQYDFVELLD
                     GSRLIAREQRNLLESERAGRQARSVSLHEAGFIQYLDSGIWHLAFYNDGKSAEQVSFN
                     TIVIESVVECPRNCHGNGECVSGTCHCFPGFLGPDCSRAACPVLCSGNGQYSKGRCLC
                     FSGWKGTECDVPNTQCIDPQCGGRGICIVGSCVCNSGYKGENCEEADCLDPGCSNHGV
                     CIHGECHCNPGWGGNNCEILKTMCPDQCSGHGTYLQESGSCTCDPNWTGPDCSNEICS
                     ADCGLHGVCMGGACRCEEGWTGPACSQRACHPRCAEHGTCRDGKCECSQGWNGEHCTI
                     EGCPGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVAMETLCTDSKDNEGDGLIDCMDP
                     DCCLQSSCQNQPYCRGLPDPQDIISQSLQSPSQQAAKPFYDRISFLIGSDSTHVIPGD
                     SPFNKSLASVIRGQVLTADGTPLIGVNVSFFHYPEYGYTITRQDGMFDLVANGGASLT
                     LVFERSPFLTQYHTVWIPWNVFYVMDTLVMKKEENDIPSCDLSGFVRPNPIIVSSPLS
                     TFFRSSPEDSPIIPETQVLHEETTIPGTDLKLSYLSSRAAGYKSVLKITMTQSVIPFN
                     LMKVHLMVAVVGRLFQKWFPASPNLAYTFIWDKTDAYNQKVYGLSEAVVSVGYEYESC
                     LDLTLWEKRTAILQGYELDASNMGGWTLNKHHVLDVQNGILYKGNGENQFISQQPPVV
                     SSIMGNGRRRSISCPSCNGPADGNKLLAPVALACGIDGSLYVGDFNYVRRMFPSGNVT
                     SVLELRNKDFRHSSSPAHRYYLATDPVSGDLYVSDTNTRRIYRPKSLTGAKDLTKNGE
                     VVAGTGEQCLPFDEARCGDGGKAVEATLMSPKGMAIDKNGLIYFVDGTMIRKVDQNGI
                     ISTLLGSNDLTSARPLTCDTSMHISQVRLEWPTDLAINPMDNSIYVLDNNVVLQITEN
                     RQVRVAAGRPMHCQVPGVEYSLGKHAVQTTLESATAIAVSYSGVLYITETDEKKINRI
                     RQVTTDGEISLVAGIPSECDCKNDANCDCYQSGDGYAKDAKLSAPSSLAASPDGTLYI
                     ADLGNIRIRAVSKNKPLLNSMNFYEVASPTDQELYIFDVNGTHQFTVSLVTGDYLYNF
                     SYSNDNDITAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLTIGTNGCLKSMTAQGL
                     ELVLFTYHGNSGLLATKSDETGWTTFFDYDSEGRLTNVTFPTGVVTNLHGDMDKAITV
                     DLESSSREEGVSITSNLSSIDSFYTVAQDQLRNSYQVGYDGSLRILYASGLDSHYQTE
                     PHVLAGTANPTVAKRNMTLPGENGQNLVEWRFRKEQAQGKVNVFGRKLRVNGRNLLSV
                     DFDRTTKTEKIYDDHRKFLLRIAYDTSGHPTLWLPSSKLMAVNVTYSSTGQVASVQRG
                     TTSEKVDYDGQGRIVSRVFADGKTWSYTYLEKSMVLLLHSQRQYIFEYDTWDQLSAIT
                     MPSVARHTMQTIRSIGYYRNIYNPPESNASVITDYNEGGLLLQTAFLGTSRRVLFKYR
                     RQTRLSEILYDSTRVSFTYDETAGVLKTVNLQSDGFICTIRYRQIGPLIDRQIFRFSE
                     DGMVNARFDYSYDNSFRVTSMQGVINETPLPIDLYQFDDISGKVEQFGKFGVIYYDIN
                     QIISTAVMTYTKHFDAHGRIKEIQYEIFRSLMYWITIQYDNMGRVTKREIKIGPFANT
                     TKYAYEYDVDGQLQTVYLNEKITWRYNYDLNGNLHLLNPSNSARLTPLRYDLRDRITR
                     LGDVQYRLDEDGFLRQRGTEIFEYSSKGLLTRVYSKGSGWTVIYRYDGLGRRVSSKTS
                     LGQHLQFFYADLTYPTRITHVYNHSSSEITSLYYDLQGHLFAMEISSGDEFYIASDNT
                     GTPLAVFSSNGLMLKQIQYTAYGEIYFDSNIDFQLVIGFHGGLYDPLTKLIHFGERDY
                     DILAGRWTTPDIEIWKRIGKDPAPFNLYMFRNNNPASKIHDVKDYITDVNSWLVTFGF
                     HLHNAIPGFPVPKFDLTEPSYELVKSQQWDDVPPTFGVQQQVARQAKAFLSLGRMAEV
                     RGSARQGSGAPSWLWFATVKSLIGKGVMLAVSRGRVQTNALNIADEDCIKVAAVLNSA
                     LYLEDLHFTVEGRDTHHFIKTSTPEGDLGTLRLTSGRRALENGINVTVSQSTAVVNGR
                     TRRFADVELQFGALALHVRYGATLDEERARVLEQARQRALARAWAREQQRVRDGEEGA
                     RLWTEGEKRQLLSAGRVQGYDGYYVLSVEQYPELADSADNIQFLRQSEIGRR"
     misc_feature    52..945
                     /gene="TENM3"
                     /note="Teneurin Intracellular Region; Region: Ten_N;
                     pfam06484"
                     /db_xref="CDD:461932"
     misc_feature    1585..2049
                     /gene="TENM3"
                     /note="Family of unknown function (DUF5885); Region:
                     DUF5885; pfam19232"
                     /db_xref="CDD:437064"
     misc_feature    2113..2241
                     /gene="TENM3"
                     /note="Delta serrate ligand; Region: DSL; cl19567"
                     /db_xref="CDD:473190"
     misc_feature    2251..2340
                     /gene="TENM3"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    2347..2439
                     /gene="TENM3"
                     /note="acidic double-disulfide repeat; Region:
                     acid_disulf_rpt; NF033662"
                     /db_xref="CDD:411265"
     misc_feature    3457..4536
                     /gene="TENM3"
                     /note="NHL repeat unit of beta-propeller proteins; Region:
                     NHL; cl18310"
                     /db_xref="CDD:302697"
     misc_feature    3544..3663
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3697..3828
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3898..4002
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4066..4185
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4195..7218
                     /gene="TENM3"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; Region:
                     RhsA; COG3209"
                     /db_xref="CDD:442442"
     misc_feature    4252..4353
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4456..4536
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    7885..8118
                     /gene="TENM3"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; Region: Tox-GHH; pfam15636"
                     /db_xref="CDD:464783"
ORIGIN      
        1 tgcgcccgga aggaatgaag tatggacgtg aaggaacgta ggccttactg ctccctgacc
       61 aagaacagac gggagaggga gcggcgctgt gctaattcct cagcagacag tgcggagtgc
      121 agggttccta cacagaagtc ctacagttcc agtgagaccc tgaaagcttt tgatcacgat
      181 tcctcgcggc tgctttatgg aaacagagta aaggatttgg ttcacagaga agcagatgag
      241 ttcaccagac gaggacagaa tttcacccta aggcagttag gcgtttgtga accggaagcc
      301 cgaagaggac tgacgttttg tgcggaaatg gggctccctc acagaggtta ctctatcagt
      361 gcagggtcag acgctgacac tgagaatgaa gcagtgatgt ccccagagca tgccatgaga
      421 ctgtggggca ggggggtcaa gtcaggccgc agctcctgtc tgtcaagccg gtccaactca
      481 gccctcaccc tgacagatac agagcacgaa aacaagtcgg acagtgaaaa cgagcaacct
      541 gcaaacaacc aaggccaatc caccctgcag cctctgccac cttcccataa gcaacactcc
      601 gcacagcatc atccatccat cacttctctc aatagaaact ccctgaccaa tagaaggaac
      661 cagagtccgg ccccgccggc tgctttgccc gccgagctgc aaaccacacc cgagtccgtc
      721 cagctgcagg acagctgggt ccttggcagt aatgtaccac tggaaagcag gcatttccta
      781 ttcaaaacag gaacagggac aacgccactg ttcagtactg caaccccagg atacacaatg
      841 gcatctggct ctgtttactc gccgcctact cggccactac ctagaaacac cctatcaaga
      901 agtgctttta aattcaagaa gtcttcaaag tactgtagct ggaaatgcac cgccctgtgt
      961 gctgtagggg tctcagtgct cctggcaata cttctgtcgt attttatagc aatgcatctc
     1021 tttggcctca actggcagtt acagcagact gaaaatgaca catttgagaa tggaaaagtg
     1081 aattctgata ccatgccaac gaacactgta tcgttacctt ctggtgacaa tggaagattg
     1141 ggtggattta cacaagaaaa taacaccata gattccggag aacttgatat tggccgaaga
     1201 gcaattcaag aggttcctcc tgggatcttc tggagatcac agctccttat tgatcagccg
     1261 cagtttctta aattcaatat ctctcttcag aaagatgcgc tgattggagt atatggccga
     1321 aaaggcttac caccttccca tactcagtac gactttgtgg aactgctgga tggcagcagg
     1381 ctgattgcac gagagcaacg gaacctgctt gagtccgaaa gagctgggcg acaggcgagg
     1441 tccgtcagtc tccacgaggc cggctttatc cagtacttgg attctggaat ctggcatctg
     1501 gctttttata atgatgggaa aagtgcagag caggtgtcct tcaataccat tgtgatagag
     1561 tctgtggtgg aatgcccccg aaattgccat ggaaatggag agtgtgtttc tggaacttgc
     1621 cattgttttc caggctttct aggtccggat tgttcaagag cagcctgtcc agtgctgtgt
     1681 agtggcaacg gccagtactc caagggccgc tgcctctgtt tcagtggctg gaagggcacc
     1741 gagtgtgatg taccaaatac gcagtgtatc gacccgcagt gcgggggtcg tgggatttgt
     1801 atcgtgggct cttgtgtttg caactctgga tacaaaggag agaactgtga agaagctgat
     1861 tgtctagacc ctggatgttc taatcatggt gtgtgtatcc atggggaatg tcactgcaat
     1921 ccaggatggg gtggtaacaa ttgtgaaata ctcaagacca tgtgtccaga ccagtgctct
     1981 ggtcatggaa catatcttca agaaagtggc tcctgcactt gtgaccctaa ttggactggc
     2041 ccagactgct caaatgagat ctgttccgcg gactgcggct tgcacggcgt ctgcatgggg
     2101 ggcgcttgcc gctgtgaaga aggctggacg ggcccagcgt gcagtcagag agcctgccac
     2161 ccgcgctgcg ccgagcacgg cacctgcagg gacggcaagt gtgaatgcag ccagggctgg
     2221 aacggcgagc actgcaccat cgaggggtgc cccggtctgt gcaacagcaa tggaagatgc
     2281 acactggacc aaaacggctg gcattgtgtt tgccagccag ggtggagggg agcagggtgt
     2341 gacgtggcca tggagaccct ctgcacagat agcaaggaca atgagggaga tggactcatt
     2401 gactgcatgg atcctgactg ctgtttacag agttcctgcc aaaatcagcc ctactgtcgt
     2461 ggattacctg atccccagga tatcattagc caaagcttac aatcaccatc tcagcaagct
     2521 gccaaaccct tctatgaccg aatcagtttt ctcataggat ctgatagcac ccatgtcata
     2581 cccggagaca gtcctttcaa taagagcctt gcatccgtca tcagaggcca agtactaact
     2641 gctgatggaa cgccacttat tggagtgaac gtctcatttt tccattaccc agaatatgga
     2701 tatactatta cccgccagga tggaatgttt gacttggtgg cgaatggcgg ggcttctcta
     2761 actttggtat ttgaacgatc cccgttcctc actcagtatc atactgtgtg gattccatgg
     2821 aatgtctttt atgtgatgga taccctcgtc atgaagaaag aggagaatga cattcccagc
     2881 tgtgatctaa gtggcttcgt gaggccgaat cctatcattg tgtcatcacc tttatccacc
     2941 ttttttagat cttctcctga agacagtccc attattcccg agacacaggt actccatgaa
     3001 gaaaccacaa ttccaggaac agacttgaaa ctctcctacc tgagttccag agctgccgga
     3061 tataagtcag tacttaagat caccatgacc cagtccgtta tcccatttaa tttaatgaag
     3121 gttcatctga tggtagctgt agtaggaaga ctctttcaaa agtggtttcc tgcctcaccg
     3181 aacttggcct atacttttat atgggataaa acagatgctt ataatcaaaa ggtctatggt
     3241 ctatctgaag ctgttgtgtc ggttggatat gaatatgagt cgtgtttgga cctgactttg
     3301 tgggagaaaa ggactgccat attgcaaggc tacgaattag atgcttccaa catgggcggt
     3361 tggacattaa acaaacatca cgtattggac gttcagaatg gtatactgta caagggaaac
     3421 ggagaaaacc agtttatctc ccaacagcct cctgtcgtca gcagcatcat gggcaacggc
     3481 cggaggcgca gcatctcgtg cccgagctgc aatggtccag ctgacgggaa taaactcttg
     3541 gccccagtgg cgttagcctg tgggatcgac ggcagcctgt acgtggggga cttcaactac
     3601 gtgcggcgga tgttcccttc cgggaacgtg acgagcgtct tagaactgag aaataaagat
     3661 tttagacata gcagcagccc agctcataga tactaccttg caactgatcc agtctcaggg
     3721 gatttgtatg tttctgacac taacactcgc aggatttatc gcccgaagtc actcacgggt
     3781 gcaaaagact tgactaaaaa tggtgaagtg gttgcaggga caggagaaca gtgccttcct
     3841 tttgatgaag ccagatgtgg ggatggaggg aaggctgtgg aagccacact catgagtccc
     3901 aaaggaatgg cgatcgacaa aaatggatta atctactttg tcgatggaac catgatcaga
     3961 aaagttgatc agaatggaat catatcaact ctcctaggct ctaacgacct gacttcagcc
     4021 agacctttaa cttgtgacac aagcatgcac atcagccagg tacgtctgga atggcccact
     4081 gacctagcca ttaaccctat ggataactcc atttatgtcc tggataataa tgtagtttta
     4141 cagatcactg aaaatcgtca agtgcgcgtt gctgctgggc ggcccatgca ttgccaggtg
     4201 ccaggagtgg aatattctct gggcaagcac gcagttcaga cgaccctgga gtcggctact
     4261 gccattgctg tgtcctacag tggggtcctg tacatcactg aaaccgacga aaagaaaatt
     4321 aaccggataa ggcaagtcac cacagacggg gagatctccc tggttgctgg gataccgtca
     4381 gagtgtgact gcaaaaacga tgccaattgt gactgctacc agagcggaga tggctatgcc
     4441 aaagatgcca aactgagcgc tccgtcctcc cttgccgcct ctccggatgg taccctgtac
     4501 attgcagacc taggaaacat tcggatccgg gctgtgtcaa agaacaagcc tttacttaac
     4561 tctatgaact tctatgaagt tgcctctcca accgatcaag aactctatat ctttgacgtc
     4621 aatggcactc accagtttac tgtgagttta gtcactggcg attatctgta caattttagc
     4681 tacagcaatg acaatgatat tactgctgtg accgacagta acggcaatac ccttaggatt
     4741 agacgggacc caaatcggat gccagtgcga gtggtgtctc ctgataacca agtgatatgg
     4801 ttgaccatag gaacaaatgg atgtttgaaa agcatgaccg ctcaaggact ggaattagtt
     4861 ttgtttactt accatggcaa cagcggcctt ttagccacta aaagcgatga aactggatgg
     4921 acaacatttt ttgactatga cagtgaaggt cgtctgacaa atgtgacatt tccaaccgga
     4981 gtggtcacaa acctccatgg ggacatggac aaggctatca cagtggacct ggagtcatcc
     5041 agcagagaag aaggtgtcag catcacttca aacctgtcct ccatcgactc attctacacc
     5101 gtggctcaag atcagttaag aaacagctac caggttggtt acgacggctc ccttcgaatc
     5161 ctgtacgcca gtggcctgga ttcgcactat cagacagagc cacacgttct ggccggcaca
     5221 gctaacccaa cagttgccaa aaggaacatg actcttcctg gtgaaaacgg tcagaatttg
     5281 gtggaatgga gattccgaaa agagcaagcc caaggcaaag tcaacgtctt tggtcgaaag
     5341 ctcagggtta atggcagaaa cctcctttca gttgactttg atcgaacaac gaagacagaa
     5401 aagatctatg atgaccaccg taaatttctc ctgaggatcg cctatgacac atcagggcat
     5461 ccgactctct ggctgccgag cagcaagctg atggccgtca atgtcaccta ttcatccacg
     5521 ggtcaagtgg ccagcgtcca gcgaggaact acgagtgaga aagtagatta cgacggacag
     5581 gggagaatcg tttcccgggt ttttgctgac gggaagacat ggagttacac gtacttggaa
     5641 aagtccatgg tgcttctgct gcatagccag cggcagtaca tctttgagta cgacacgtgg
     5701 gaccagctgt cggccatcac catgcccagc gtggctcgcc acacaatgca gaccatccgc
     5761 tccatcggct attaccgtaa catatacaac cccccggaga gcaatgcctc cgtcatcacg
     5821 gactacaacg agggcgggct gcttctccag acggccttcc tgggtacgag tcggagggtc
     5881 ctattcaagt acaggaggca gaccaggctc tcagaaatct tatacgatag cacgagagtc
     5941 agttttacct acgatgaaac ggcaggagtc ctcaaaacgg taaacctcca gagtgatggt
     6001 tttatttgca ccatcagata caggcaaatt ggacctctca ttgacagaca gatcttccgc
     6061 tttagtgaag atgggatggt gaacgcgaga ttcgactaca gctatgacaa cagctttcgg
     6121 gtgaccagca tgcagggtgt catcaatgaa actccgctgc ccattgacct ctatcagttc
     6181 gatgacattt ctggaaaagt ggagcagttt ggaaaatttg gagttatata ttatgatatt
     6241 aaccagatca tttccacagc tgtaatgact tacacgaagc actttgacgc tcacggccgc
     6301 atcaaggaaa ttcaatatga gatcttcagg tcactcatgt actggattac aattcagtat
     6361 gataacatgg gtcgggtaac caagagagag attaaaatag ggcccttcgc caacactacc
     6421 aaatatgctt atgagtacga tgtcgacgga cagctgcaga cagtttatct gaatgaaaaa
     6481 attacgtggc gttacaacta cgacctgaat ggaaacctcc acctactgaa cccaagtaac
     6541 agcgcgcgct tgacgcctct tcgctatgac ctgcgagaca ggatcacccg actgggcgat
     6601 gttcagtacc ggttggatga agatggcttc ctgcgtcaaa gaggcacaga gatctttgag
     6661 tacagctcca aggggcttct gacccgagtg tacagtaaag gcagcggctg gacagtgatc
     6721 tatcgttacg acggcctggg aaggcgtgtg tctagcaaga ccagtctggg acagcacctg
     6781 cagttttttt acgcagacct cacttatccc accaggatta ctcacgtcta caaccattcg
     6841 agttcagaga tcacctccct ctattatgat ctccaaggac atctttttgc catggaaatc
     6901 agcagcgggg atgaattcta catcgcatca gacaacacag ggacaccact ggctgtcttc
     6961 agcagcaacg ggcttatgct caaacagatt cagtacaccg catacggcga aatctatttt
     7021 gactccaaca ttgactttca gctggtgatt ggatttcatg gtggcttgta tgacccgctc
     7081 acaaaattaa tccactttgg agaaagggat tatgacattt tggcaggacg atggacaacg
     7141 cctgacatag aaatctggaa aaggattggg aaggacccag ctccctttaa cctgtacatg
     7201 tttaggaata acaaccctgc aagcaaaatc catgatgtga aagactacat cacagatgtt
     7261 aacagctggc tggtgacatt tggcttccat ctgcacaatg ccattcctgg gttccctgtc
     7321 cccaaattcg atctaacgga gccttcttac gaactggtga agagtcagca gtgggatgat
     7381 gtaccgccca cgtttggagt ccagcagcag gtggcgaggc aggccaaggc cttcctgtcc
     7441 ctgggcagga tggccgaggt gcggggcagc gcgcgccagg gcagcggcgc gccgtcgtgg
     7501 ctgtggttcg cgacggttaa gtcgctgatc ggcaagggcg tcatgctggc cgtgagccgg
     7561 ggccgcgtgc agaccaacgc gctcaacatc gccgacgagg actgcatcaa ggtggcggcc
     7621 gtgctcaaca gcgccctcta cctggaggac ctgcacttca ccgtcgaggg cagggacacg
     7681 caccacttca tcaagaccag cacgcccgag ggcgacctgg gcacgctgcg cctgacgagc
     7741 ggccgccggg cgctggagaa cggcatcaac gtgaccgtgt cgcagtccac cgccgtggtc
     7801 aacggcagga cccgcaggtt cgcggacgtg gagctgcagt tcggcgcgct ggcgctgcat
     7861 gtgcgctacg gcgcgaccct ggacgaggag agggcgcgcg tgctggagca ggcgcggcag
     7921 cgcgcgctcg cccgggcctg ggcgcgcgag cagcagcgcg tgcgcgacgg cgaggagggc
     7981 gcgcgcctct ggacggaggg cgagaagcgg cagctgctga gcgccggcag ggtgcagggc
     8041 tacgacggct actacgtgct ctcggtggag cagtaccccg agctggcaga cagcgcggac
     8101 aacatccagt tcctccgcca gagcgagatc ggccgcaggt aacgcccgcg ccggcggcgg
     8161 ggaagcgcgc gcgcgcgggc gcgcgggggc cgagccggcg gggccgcctg cctctccagc
     8221 cccaggcgca gcgccacctc tgcgcagatg tgtctggggc gcgagccgag ggggctcccc
     8281 ggcaccgagg agagccagac tgctcttaaa aaaaaaaaaa accacccccc ccaaatcaaa
     8341 gcagacagac aaaaacaaaa acctttcttc tgaatgacct taaaggtgat cggctttaaa
     8401 gaatatgttt acatatgcat atcgctgcac tcagttggac ggaaagtatt gcgaggaaaa
     8461 catcattaaa ggaaaaaaaa aaaaagccca accattttgc cccgggccgt ctgttcttcg
     8521 aggcactgtg tttaaagaag gtagagatgc acacagtgtt tccagatgtt acccagctgt
     8581 cgacttttgc ttacaagaag tagtctctct gcatagggtg tgatgtatat ccctgttaat
     8641 gttagaatgt gaggcagagt tactgttcct ggacgacccg actgcttccc cagtgctgct
     8701 ttgtaaaagg acattggcac aagtgacttc tgccggggcg gggatttcta agggatttta
     8761 cgaggccaac gtggtgtgcc tcgcggggaa gaacaccagc ccacacagaa tccttgtcac
     8821 tgatgatgag caaaggaagc cctgattttt ttgtaaatta tgtgagacaa gttgtttatg
     8881 gatttttata tgaattacaa tttactgtac atcaaatatt agtctcagag gagttaattt
     8941 atgtaaagtg tttaaaaagt ttatacttaa aaataaaacg ataaaaacat g
//
LOCUS       XM_032618478            8988 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus teneurin transmembrane protein 3 (TENM3),
            transcript variant X2, mRNA.
ACCESSION   XM_032618478
VERSION     XM_032618478.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8988
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8988
                     /gene="TENM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746779"
     CDS             22..8139
                     /gene="TENM3"
                     /codon_start=1
                     /product="teneurin-3 isoform X2"
                     /protein_id="XP_032474369.1"
                     /db_xref="GeneID:116746779"
                     /translation="MDVKERRPYCSLTKNRRERERRCANSSADSAECRVPTQKSYSSS
                     ETLKAFDHDSSRLLYGNRVKDLVHREADEFTRRGQNFTLRQLGVCEPEARRGLTFCAE
                     MGLPHRGYSISAGSDADTENEAVMSPEHAMRLWGRGVKSGRSSCLSSRSNSALTLTDT
                     EHENKSDSENEQPANNQGQSTLQPLPPSHKQHSAQHHPSITSLNRNSLTNRRNQSPAP
                     PAALPAELQTTPESVQLQDSWVLGSNVPLESRHFLFKTGTGTTPLFSTATPGYTMASG
                     SVYSPPTRPLPRNTLSRSAFKFKKSSKYCSWKCTALCAVGVSVLLAILLSYFIAMHLF
                     GLNWQLQQTENDTFENGKVNSDTMPTNTVSLPSGDNGRLGGFTQENNTIDSGELDIGR
                     RAIQEVPPGIFWRSQLLIDQPQFLKFNISLQKDALIGVYGRKGLPPSHTQYDFVELLD
                     GSRLIAREQRNLLESERAGRQARSVSLHEAGFIQYLDSGIWHLAFYNDGKSAEQVSFN
                     TIVIESVVECPRNCHGNGECVSGTCHCFPGFLGPDCSRAACPVLCSGNGQYSKGRCLC
                     FSGWKGTECDVPNTQCIDPQCGGRGICIVGSCVCNSGYKGENCEEADCLDPGCSNHGV
                     CIHGECHCNPGWGGNNCEILKTMCPDQCSGHGTYLQESGSCTCDPNWTGPDCSNEICS
                     ADCGLHGVCMGGACRCEEGWTGPACSQRACHPRCAEHGTCRDGKCECSQGWNGEHCTI
                     EGCPGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVAMETLCTDSKDNEGDGLIDCMDP
                     DCCLQSSCQNQPYCRGLPDPQDIISQSLQSPSQQAAKPFYDRISFLIGSDSTHVIPGD
                     SPFNKSLASVIRGQVLTADGTPLIGVNVSFFHYPEYGYTITRQDGMFDLVANGGASLT
                     LVFERSPFLTQYHTVWIPWNVFYVMDTLVMKKEENDIPSCDLSGFVRPNPIIVSSPLS
                     TFFRSSPEDSPIIPETQVLHEETTIPGTDLKLSYLSSRAAGYKSVLKITMTQSVIPFN
                     LMKVHLMVAVVGRLFQKWFPASPNLAYTFIWDKTDAYNQKVYGLSEAVVSVGYEYESC
                     LDLTLWEKRTAILQGYELDASNMGGWTLNKHHVLDVQNGILYKGNGENQFISQQPPVV
                     SSIMGNGRRRSISCPSCNGPADGNKLLAPVALACGIDGSLYVGDFNYVRRMFPSGNVT
                     SVLELRNKDFRHSSPAHRYYLATDPVSGDLYVSDTNTRRIYRPKSLTGAKDLTKNGEV
                     VAGTGEQCLPFDEARCGDGGKAVEATLMSPKGMAIDKNGLIYFVDGTMIRKVDQNGII
                     STLLGSNDLTSARPLTCDTSMHISQVRLEWPTDLAINPMDNSIYVLDNNVVLQITENR
                     QVRVAAGRPMHCQVPGVEYSLGKHAVQTTLESATAIAVSYSGVLYITETDEKKINRIR
                     QVTTDGEISLVAGIPSECDCKNDANCDCYQSGDGYAKDAKLSAPSSLAASPDGTLYIA
                     DLGNIRIRAVSKNKPLLNSMNFYEVASPTDQELYIFDVNGTHQFTVSLVTGDYLYNFS
                     YSNDNDITAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLTIGTNGCLKSMTAQGLE
                     LVLFTYHGNSGLLATKSDETGWTTFFDYDSEGRLTNVTFPTGVVTNLHGDMDKAITVD
                     LESSSREEGVSITSNLSSIDSFYTVAQDQLRNSYQVGYDGSLRILYASGLDSHYQTEP
                     HVLAGTANPTVAKRNMTLPGENGQNLVEWRFRKEQAQGKVNVFGRKLRVNGRNLLSVD
                     FDRTTKTEKIYDDHRKFLLRIAYDTSGHPTLWLPSSKLMAVNVTYSSTGQVASVQRGT
                     TSEKVDYDGQGRIVSRVFADGKTWSYTYLEKSMVLLLHSQRQYIFEYDTWDQLSAITM
                     PSVARHTMQTIRSIGYYRNIYNPPESNASVITDYNEGGLLLQTAFLGTSRRVLFKYRR
                     QTRLSEILYDSTRVSFTYDETAGVLKTVNLQSDGFICTIRYRQIGPLIDRQIFRFSED
                     GMVNARFDYSYDNSFRVTSMQGVINETPLPIDLYQFDDISGKVEQFGKFGVIYYDINQ
                     IISTAVMTYTKHFDAHGRIKEIQYEIFRSLMYWITIQYDNMGRVTKREIKIGPFANTT
                     KYAYEYDVDGQLQTVYLNEKITWRYNYDLNGNLHLLNPSNSARLTPLRYDLRDRITRL
                     GDVQYRLDEDGFLRQRGTEIFEYSSKGLLTRVYSKGSGWTVIYRYDGLGRRVSSKTSL
                     GQHLQFFYADLTYPTRITHVYNHSSSEITSLYYDLQGHLFAMEISSGDEFYIASDNTG
                     TPLAVFSSNGLMLKQIQYTAYGEIYFDSNIDFQLVIGFHGGLYDPLTKLIHFGERDYD
                     ILAGRWTTPDIEIWKRIGKDPAPFNLYMFRNNNPASKIHDVKDYITDVNSWLVTFGFH
                     LHNAIPGFPVPKFDLTEPSYELVKSQQWDDVPPTFGVQQQVARQAKAFLSLGRMAEVR
                     GSARQGSGAPSWLWFATVKSLIGKGVMLAVSRGRVQTNALNIADEDCIKVAAVLNSAL
                     YLEDLHFTVEGRDTHHFIKTSTPEGDLGTLRLTSGRRALENGINVTVSQSTAVVNGRT
                     RRFADVELQFGALALHVRYGATLDEERARVLEQARQRALARAWAREQQRVRDGEEGAR
                     LWTEGEKRQLLSAGRVQGYDGYYVLSVEQYPELADSADNIQFLRQSEIGRR"
     misc_feature    52..945
                     /gene="TENM3"
                     /note="Teneurin Intracellular Region; Region: Ten_N;
                     pfam06484"
                     /db_xref="CDD:461932"
     misc_feature    1585..2049
                     /gene="TENM3"
                     /note="Family of unknown function (DUF5885); Region:
                     DUF5885; pfam19232"
                     /db_xref="CDD:437064"
     misc_feature    2113..2241
                     /gene="TENM3"
                     /note="Delta serrate ligand; Region: DSL; cl19567"
                     /db_xref="CDD:473190"
     misc_feature    2251..2340
                     /gene="TENM3"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    2347..2439
                     /gene="TENM3"
                     /note="acidic double-disulfide repeat; Region:
                     acid_disulf_rpt; NF033662"
                     /db_xref="CDD:411265"
     misc_feature    3457..4533
                     /gene="TENM3"
                     /note="NHL repeat unit of beta-propeller proteins; Region:
                     NHL; cl18310"
                     /db_xref="CDD:302697"
     misc_feature    3544..3663
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3694..3825
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3895..3999
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4063..4182
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4192..7215
                     /gene="TENM3"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; Region:
                     RhsA; COG3209"
                     /db_xref="CDD:442442"
     misc_feature    4249..4350
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4453..4533
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    7882..8115
                     /gene="TENM3"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; Region: Tox-GHH; pfam15636"
                     /db_xref="CDD:464783"
ORIGIN      
        1 tgcgcccgga aggaatgaag tatggacgtg aaggaacgta ggccttactg ctccctgacc
       61 aagaacagac gggagaggga gcggcgctgt gctaattcct cagcagacag tgcggagtgc
      121 agggttccta cacagaagtc ctacagttcc agtgagaccc tgaaagcttt tgatcacgat
      181 tcctcgcggc tgctttatgg aaacagagta aaggatttgg ttcacagaga agcagatgag
      241 ttcaccagac gaggacagaa tttcacccta aggcagttag gcgtttgtga accggaagcc
      301 cgaagaggac tgacgttttg tgcggaaatg gggctccctc acagaggtta ctctatcagt
      361 gcagggtcag acgctgacac tgagaatgaa gcagtgatgt ccccagagca tgccatgaga
      421 ctgtggggca ggggggtcaa gtcaggccgc agctcctgtc tgtcaagccg gtccaactca
      481 gccctcaccc tgacagatac agagcacgaa aacaagtcgg acagtgaaaa cgagcaacct
      541 gcaaacaacc aaggccaatc caccctgcag cctctgccac cttcccataa gcaacactcc
      601 gcacagcatc atccatccat cacttctctc aatagaaact ccctgaccaa tagaaggaac
      661 cagagtccgg ccccgccggc tgctttgccc gccgagctgc aaaccacacc cgagtccgtc
      721 cagctgcagg acagctgggt ccttggcagt aatgtaccac tggaaagcag gcatttccta
      781 ttcaaaacag gaacagggac aacgccactg ttcagtactg caaccccagg atacacaatg
      841 gcatctggct ctgtttactc gccgcctact cggccactac ctagaaacac cctatcaaga
      901 agtgctttta aattcaagaa gtcttcaaag tactgtagct ggaaatgcac cgccctgtgt
      961 gctgtagggg tctcagtgct cctggcaata cttctgtcgt attttatagc aatgcatctc
     1021 tttggcctca actggcagtt acagcagact gaaaatgaca catttgagaa tggaaaagtg
     1081 aattctgata ccatgccaac gaacactgta tcgttacctt ctggtgacaa tggaagattg
     1141 ggtggattta cacaagaaaa taacaccata gattccggag aacttgatat tggccgaaga
     1201 gcaattcaag aggttcctcc tgggatcttc tggagatcac agctccttat tgatcagccg
     1261 cagtttctta aattcaatat ctctcttcag aaagatgcgc tgattggagt atatggccga
     1321 aaaggcttac caccttccca tactcagtac gactttgtgg aactgctgga tggcagcagg
     1381 ctgattgcac gagagcaacg gaacctgctt gagtccgaaa gagctgggcg acaggcgagg
     1441 tccgtcagtc tccacgaggc cggctttatc cagtacttgg attctggaat ctggcatctg
     1501 gctttttata atgatgggaa aagtgcagag caggtgtcct tcaataccat tgtgatagag
     1561 tctgtggtgg aatgcccccg aaattgccat ggaaatggag agtgtgtttc tggaacttgc
     1621 cattgttttc caggctttct aggtccggat tgttcaagag cagcctgtcc agtgctgtgt
     1681 agtggcaacg gccagtactc caagggccgc tgcctctgtt tcagtggctg gaagggcacc
     1741 gagtgtgatg taccaaatac gcagtgtatc gacccgcagt gcgggggtcg tgggatttgt
     1801 atcgtgggct cttgtgtttg caactctgga tacaaaggag agaactgtga agaagctgat
     1861 tgtctagacc ctggatgttc taatcatggt gtgtgtatcc atggggaatg tcactgcaat
     1921 ccaggatggg gtggtaacaa ttgtgaaata ctcaagacca tgtgtccaga ccagtgctct
     1981 ggtcatggaa catatcttca agaaagtggc tcctgcactt gtgaccctaa ttggactggc
     2041 ccagactgct caaatgagat ctgttccgcg gactgcggct tgcacggcgt ctgcatgggg
     2101 ggcgcttgcc gctgtgaaga aggctggacg ggcccagcgt gcagtcagag agcctgccac
     2161 ccgcgctgcg ccgagcacgg cacctgcagg gacggcaagt gtgaatgcag ccagggctgg
     2221 aacggcgagc actgcaccat cgaggggtgc cccggtctgt gcaacagcaa tggaagatgc
     2281 acactggacc aaaacggctg gcattgtgtt tgccagccag ggtggagggg agcagggtgt
     2341 gacgtggcca tggagaccct ctgcacagat agcaaggaca atgagggaga tggactcatt
     2401 gactgcatgg atcctgactg ctgtttacag agttcctgcc aaaatcagcc ctactgtcgt
     2461 ggattacctg atccccagga tatcattagc caaagcttac aatcaccatc tcagcaagct
     2521 gccaaaccct tctatgaccg aatcagtttt ctcataggat ctgatagcac ccatgtcata
     2581 cccggagaca gtcctttcaa taagagcctt gcatccgtca tcagaggcca agtactaact
     2641 gctgatggaa cgccacttat tggagtgaac gtctcatttt tccattaccc agaatatgga
     2701 tatactatta cccgccagga tggaatgttt gacttggtgg cgaatggcgg ggcttctcta
     2761 actttggtat ttgaacgatc cccgttcctc actcagtatc atactgtgtg gattccatgg
     2821 aatgtctttt atgtgatgga taccctcgtc atgaagaaag aggagaatga cattcccagc
     2881 tgtgatctaa gtggcttcgt gaggccgaat cctatcattg tgtcatcacc tttatccacc
     2941 ttttttagat cttctcctga agacagtccc attattcccg agacacaggt actccatgaa
     3001 gaaaccacaa ttccaggaac agacttgaaa ctctcctacc tgagttccag agctgccgga
     3061 tataagtcag tacttaagat caccatgacc cagtccgtta tcccatttaa tttaatgaag
     3121 gttcatctga tggtagctgt agtaggaaga ctctttcaaa agtggtttcc tgcctcaccg
     3181 aacttggcct atacttttat atgggataaa acagatgctt ataatcaaaa ggtctatggt
     3241 ctatctgaag ctgttgtgtc ggttggatat gaatatgagt cgtgtttgga cctgactttg
     3301 tgggagaaaa ggactgccat attgcaaggc tacgaattag atgcttccaa catgggcggt
     3361 tggacattaa acaaacatca cgtattggac gttcagaatg gtatactgta caagggaaac
     3421 ggagaaaacc agtttatctc ccaacagcct cctgtcgtca gcagcatcat gggcaacggc
     3481 cggaggcgca gcatctcgtg cccgagctgc aatggtccag ctgacgggaa taaactcttg
     3541 gccccagtgg cgttagcctg tgggatcgac ggcagcctgt acgtggggga cttcaactac
     3601 gtgcggcgga tgttcccttc cgggaacgtg acgagcgtct tagaactgag aaataaagat
     3661 tttagacata gcagcccagc tcatagatac taccttgcaa ctgatccagt ctcaggggat
     3721 ttgtatgttt ctgacactaa cactcgcagg atttatcgcc cgaagtcact cacgggtgca
     3781 aaagacttga ctaaaaatgg tgaagtggtt gcagggacag gagaacagtg ccttcctttt
     3841 gatgaagcca gatgtgggga tggagggaag gctgtggaag ccacactcat gagtcccaaa
     3901 ggaatggcga tcgacaaaaa tggattaatc tactttgtcg atggaaccat gatcagaaaa
     3961 gttgatcaga atggaatcat atcaactctc ctaggctcta acgacctgac ttcagccaga
     4021 cctttaactt gtgacacaag catgcacatc agccaggtac gtctggaatg gcccactgac
     4081 ctagccatta accctatgga taactccatt tatgtcctgg ataataatgt agttttacag
     4141 atcactgaaa atcgtcaagt gcgcgttgct gctgggcggc ccatgcattg ccaggtgcca
     4201 ggagtggaat attctctggg caagcacgca gttcagacga ccctggagtc ggctactgcc
     4261 attgctgtgt cctacagtgg ggtcctgtac atcactgaaa ccgacgaaaa gaaaattaac
     4321 cggataaggc aagtcaccac agacggggag atctccctgg ttgctgggat accgtcagag
     4381 tgtgactgca aaaacgatgc caattgtgac tgctaccaga gcggagatgg ctatgccaaa
     4441 gatgccaaac tgagcgctcc gtcctccctt gccgcctctc cggatggtac cctgtacatt
     4501 gcagacctag gaaacattcg gatccgggct gtgtcaaaga acaagccttt acttaactct
     4561 atgaacttct atgaagttgc ctctccaacc gatcaagaac tctatatctt tgacgtcaat
     4621 ggcactcacc agtttactgt gagtttagtc actggcgatt atctgtacaa ttttagctac
     4681 agcaatgaca atgatattac tgctgtgacc gacagtaacg gcaataccct taggattaga
     4741 cgggacccaa atcggatgcc agtgcgagtg gtgtctcctg ataaccaagt gatatggttg
     4801 accataggaa caaatggatg tttgaaaagc atgaccgctc aaggactgga attagttttg
     4861 tttacttacc atggcaacag cggcctttta gccactaaaa gcgatgaaac tggatggaca
     4921 acattttttg actatgacag tgaaggtcgt ctgacaaatg tgacatttcc aaccggagtg
     4981 gtcacaaacc tccatgggga catggacaag gctatcacag tggacctgga gtcatccagc
     5041 agagaagaag gtgtcagcat cacttcaaac ctgtcctcca tcgactcatt ctacaccgtg
     5101 gctcaagatc agttaagaaa cagctaccag gttggttacg acggctccct tcgaatcctg
     5161 tacgccagtg gcctggattc gcactatcag acagagccac acgttctggc cggcacagct
     5221 aacccaacag ttgccaaaag gaacatgact cttcctggtg aaaacggtca gaatttggtg
     5281 gaatggagat tccgaaaaga gcaagcccaa ggcaaagtca acgtctttgg tcgaaagctc
     5341 agggttaatg gcagaaacct cctttcagtt gactttgatc gaacaacgaa gacagaaaag
     5401 atctatgatg accaccgtaa atttctcctg aggatcgcct atgacacatc agggcatccg
     5461 actctctggc tgccgagcag caagctgatg gccgtcaatg tcacctattc atccacgggt
     5521 caagtggcca gcgtccagcg aggaactacg agtgagaaag tagattacga cggacagggg
     5581 agaatcgttt cccgggtttt tgctgacggg aagacatgga gttacacgta cttggaaaag
     5641 tccatggtgc ttctgctgca tagccagcgg cagtacatct ttgagtacga cacgtgggac
     5701 cagctgtcgg ccatcaccat gcccagcgtg gctcgccaca caatgcagac catccgctcc
     5761 atcggctatt accgtaacat atacaacccc ccggagagca atgcctccgt catcacggac
     5821 tacaacgagg gcgggctgct tctccagacg gccttcctgg gtacgagtcg gagggtccta
     5881 ttcaagtaca ggaggcagac caggctctca gaaatcttat acgatagcac gagagtcagt
     5941 tttacctacg atgaaacggc aggagtcctc aaaacggtaa acctccagag tgatggtttt
     6001 atttgcacca tcagatacag gcaaattgga cctctcattg acagacagat cttccgcttt
     6061 agtgaagatg ggatggtgaa cgcgagattc gactacagct atgacaacag ctttcgggtg
     6121 accagcatgc agggtgtcat caatgaaact ccgctgccca ttgacctcta tcagttcgat
     6181 gacatttctg gaaaagtgga gcagtttgga aaatttggag ttatatatta tgatattaac
     6241 cagatcattt ccacagctgt aatgacttac acgaagcact ttgacgctca cggccgcatc
     6301 aaggaaattc aatatgagat cttcaggtca ctcatgtact ggattacaat tcagtatgat
     6361 aacatgggtc gggtaaccaa gagagagatt aaaatagggc ccttcgccaa cactaccaaa
     6421 tatgcttatg agtacgatgt cgacggacag ctgcagacag tttatctgaa tgaaaaaatt
     6481 acgtggcgtt acaactacga cctgaatgga aacctccacc tactgaaccc aagtaacagc
     6541 gcgcgcttga cgcctcttcg ctatgacctg cgagacagga tcacccgact gggcgatgtt
     6601 cagtaccggt tggatgaaga tggcttcctg cgtcaaagag gcacagagat ctttgagtac
     6661 agctccaagg ggcttctgac ccgagtgtac agtaaaggca gcggctggac agtgatctat
     6721 cgttacgacg gcctgggaag gcgtgtgtct agcaagacca gtctgggaca gcacctgcag
     6781 tttttttacg cagacctcac ttatcccacc aggattactc acgtctacaa ccattcgagt
     6841 tcagagatca cctccctcta ttatgatctc caaggacatc tttttgccat ggaaatcagc
     6901 agcggggatg aattctacat cgcatcagac aacacaggga caccactggc tgtcttcagc
     6961 agcaacgggc ttatgctcaa acagattcag tacaccgcat acggcgaaat ctattttgac
     7021 tccaacattg actttcagct ggtgattgga tttcatggtg gcttgtatga cccgctcaca
     7081 aaattaatcc actttggaga aagggattat gacattttgg caggacgatg gacaacgcct
     7141 gacatagaaa tctggaaaag gattgggaag gacccagctc cctttaacct gtacatgttt
     7201 aggaataaca accctgcaag caaaatccat gatgtgaaag actacatcac agatgttaac
     7261 agctggctgg tgacatttgg cttccatctg cacaatgcca ttcctgggtt ccctgtcccc
     7321 aaattcgatc taacggagcc ttcttacgaa ctggtgaaga gtcagcagtg ggatgatgta
     7381 ccgcccacgt ttggagtcca gcagcaggtg gcgaggcagg ccaaggcctt cctgtccctg
     7441 ggcaggatgg ccgaggtgcg gggcagcgcg cgccagggca gcggcgcgcc gtcgtggctg
     7501 tggttcgcga cggttaagtc gctgatcggc aagggcgtca tgctggccgt gagccggggc
     7561 cgcgtgcaga ccaacgcgct caacatcgcc gacgaggact gcatcaaggt ggcggccgtg
     7621 ctcaacagcg ccctctacct ggaggacctg cacttcaccg tcgagggcag ggacacgcac
     7681 cacttcatca agaccagcac gcccgagggc gacctgggca cgctgcgcct gacgagcggc
     7741 cgccgggcgc tggagaacgg catcaacgtg accgtgtcgc agtccaccgc cgtggtcaac
     7801 ggcaggaccc gcaggttcgc ggacgtggag ctgcagttcg gcgcgctggc gctgcatgtg
     7861 cgctacggcg cgaccctgga cgaggagagg gcgcgcgtgc tggagcaggc gcggcagcgc
     7921 gcgctcgccc gggcctgggc gcgcgagcag cagcgcgtgc gcgacggcga ggagggcgcg
     7981 cgcctctgga cggagggcga gaagcggcag ctgctgagcg ccggcagggt gcagggctac
     8041 gacggctact acgtgctctc ggtggagcag taccccgagc tggcagacag cgcggacaac
     8101 atccagttcc tccgccagag cgagatcggc cgcaggtaac gcccgcgccg gcggcgggga
     8161 agcgcgcgcg cgcgggcgcg cgggggccga gccggcgggg ccgcctgcct ctccagcccc
     8221 aggcgcagcg ccacctctgc gcagatgtgt ctggggcgcg agccgagggg gctccccggc
     8281 accgaggaga gccagactgc tcttaaaaaa aaaaaaaacc acccccccca aatcaaagca
     8341 gacagacaaa aacaaaaacc tttcttctga atgaccttaa aggtgatcgg ctttaaagaa
     8401 tatgtttaca tatgcatatc gctgcactca gttggacgga aagtattgcg aggaaaacat
     8461 cattaaagga aaaaaaaaaa aagcccaacc attttgcccc gggccgtctg ttcttcgagg
     8521 cactgtgttt aaagaaggta gagatgcaca cagtgtttcc agatgttacc cagctgtcga
     8581 cttttgctta caagaagtag tctctctgca tagggtgtga tgtatatccc tgttaatgtt
     8641 agaatgtgag gcagagttac tgttcctgga cgacccgact gcttccccag tgctgctttg
     8701 taaaaggaca ttggcacaag tgacttctgc cggggcgggg atttctaagg gattttacga
     8761 ggccaacgtg gtgtgcctcg cggggaagaa caccagccca cacagaatcc ttgtcactga
     8821 tgatgagcaa aggaagccct gatttttttg taaattatgt gagacaagtt gtttatggat
     8881 ttttatatga attacaattt actgtacatc aaatattagt ctcagaggag ttaatttatg
     8941 taaagtgttt aaaaagttta tacttaaaaa taaaacgata aaaacatg
//
LOCUS       XM_032618479            8970 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus teneurin transmembrane protein 3 (TENM3),
            transcript variant X3, mRNA.
ACCESSION   XM_032618479
VERSION     XM_032618479.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8970
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8970
                     /gene="TENM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746779"
     CDS             22..8121
                     /gene="TENM3"
                     /codon_start=1
                     /product="teneurin-3 isoform X3"
                     /protein_id="XP_032474370.1"
                     /db_xref="GeneID:116746779"
                     /translation="MDVKERRPYCSLTKNRRERERRCANSSADSAECRVPTQKSYSSS
                     ETLKAFDHDSSRLLYGNRVKDLVHREADEFTRRGQNFTLRQLGVCEPEARRGLTFCAE
                     MGLPHRGYSISAGSDADTENEAVMSPEHAMRLWGRGVKSGRSSCLSSRSNSALTLTDT
                     EHENKSDSENEQPANNQGQSTLQPLPPSHKQHSAQHHPSITSLNRNSLTNRRNQSPAP
                     PAALPAELQTTPESVQLQDSWVLGSNVPLESRHFLFKTGTGTTPLFSTATPGYTMASG
                     SVYSPPTRPLPRNTLSRSAFKFKKSSKYCSWKCTALCAVGVSVLLAILLSYFIAMHLF
                     GLNWQLQQTENDTFENGKVNSDTMPTNTVSLPSGDNGRLGGFTQENNTIDSGELDIGR
                     RAIQEVPPGIFWRSQLLIDQPQFLKFNISLQKDALIGVYGRKGLPPSHTQYDFVELLD
                     GSRLIAREQRNLLESERAGRQARSVSLHEAGFIQYLDSGIWHLAFYNDGKSAEQVSFN
                     TIVIESVVECPRNCHGNGECVSGTCHCFPGFLGPDCSRAACPVLCSGNGQYSKGRCLC
                     FSGWKGTECDVPNTQCIDPQCGGRGICIVGSCVCNSGYKGENCEEADCLDPGCSNHGV
                     CIHGECHCNPGWGGNNCEILKTMCPDQCSGHGTYLQESGSCTCDPNWTGPDCSNEICS
                     ADCGLHGVCMGGACRCEEGWTGPACSQRACHPRCAEHGTCRDGKCECSQGWNGEHCTI
                     EGCPGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVAMETLCTDSKDNEGDGLIDCMDP
                     DCCLQSSCQNQPYCRGLPDPQDIISQSLQSPSQQAAKPFYDRISFLIGSDSTHVIPGD
                     SPFNKSLASVIRGQVLTADGTPLIGVNVSFFHYPEYGYTITRQDGMFDLVANGGASLT
                     LVFERSPFLTQYHTVWIPWNVFYVMDTLVMKKEENDIPSCDLSGFVRPNPIIVSSPLS
                     TFFRSSPEDSPIIPETQVLHEETTIPGTDLKLSYLSSRAAGYKSVLKITMTQSVIPFN
                     LMKVHLMVAVVGRLFQKWFPASPNLAYTFIWDKTDAYNQKVYGLSEAVVSVGYEYESC
                     LDLTLWEKRTAILQGYELDASNMGGWTLNKHHVLDVQNGILYKGNGENQFISQQPPVV
                     SSIMGNGRRRSISCPSCNGPADGNKLLAPVALACGIDGSLYVGDFNYVRRMFPSGNVT
                     SVLELSSSPAHRYYLATDPVSGDLYVSDTNTRRIYRPKSLTGAKDLTKNGEVVAGTGE
                     QCLPFDEARCGDGGKAVEATLMSPKGMAIDKNGLIYFVDGTMIRKVDQNGIISTLLGS
                     NDLTSARPLTCDTSMHISQVRLEWPTDLAINPMDNSIYVLDNNVVLQITENRQVRVAA
                     GRPMHCQVPGVEYSLGKHAVQTTLESATAIAVSYSGVLYITETDEKKINRIRQVTTDG
                     EISLVAGIPSECDCKNDANCDCYQSGDGYAKDAKLSAPSSLAASPDGTLYIADLGNIR
                     IRAVSKNKPLLNSMNFYEVASPTDQELYIFDVNGTHQFTVSLVTGDYLYNFSYSNDND
                     ITAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLTIGTNGCLKSMTAQGLELVLFTY
                     HGNSGLLATKSDETGWTTFFDYDSEGRLTNVTFPTGVVTNLHGDMDKAITVDLESSSR
                     EEGVSITSNLSSIDSFYTVAQDQLRNSYQVGYDGSLRILYASGLDSHYQTEPHVLAGT
                     ANPTVAKRNMTLPGENGQNLVEWRFRKEQAQGKVNVFGRKLRVNGRNLLSVDFDRTTK
                     TEKIYDDHRKFLLRIAYDTSGHPTLWLPSSKLMAVNVTYSSTGQVASVQRGTTSEKVD
                     YDGQGRIVSRVFADGKTWSYTYLEKSMVLLLHSQRQYIFEYDTWDQLSAITMPSVARH
                     TMQTIRSIGYYRNIYNPPESNASVITDYNEGGLLLQTAFLGTSRRVLFKYRRQTRLSE
                     ILYDSTRVSFTYDETAGVLKTVNLQSDGFICTIRYRQIGPLIDRQIFRFSEDGMVNAR
                     FDYSYDNSFRVTSMQGVINETPLPIDLYQFDDISGKVEQFGKFGVIYYDINQIISTAV
                     MTYTKHFDAHGRIKEIQYEIFRSLMYWITIQYDNMGRVTKREIKIGPFANTTKYAYEY
                     DVDGQLQTVYLNEKITWRYNYDLNGNLHLLNPSNSARLTPLRYDLRDRITRLGDVQYR
                     LDEDGFLRQRGTEIFEYSSKGLLTRVYSKGSGWTVIYRYDGLGRRVSSKTSLGQHLQF
                     FYADLTYPTRITHVYNHSSSEITSLYYDLQGHLFAMEISSGDEFYIASDNTGTPLAVF
                     SSNGLMLKQIQYTAYGEIYFDSNIDFQLVIGFHGGLYDPLTKLIHFGERDYDILAGRW
                     TTPDIEIWKRIGKDPAPFNLYMFRNNNPASKIHDVKDYITDVNSWLVTFGFHLHNAIP
                     GFPVPKFDLTEPSYELVKSQQWDDVPPTFGVQQQVARQAKAFLSLGRMAEVRGSARQG
                     SGAPSWLWFATVKSLIGKGVMLAVSRGRVQTNALNIADEDCIKVAAVLNSALYLEDLH
                     FTVEGRDTHHFIKTSTPEGDLGTLRLTSGRRALENGINVTVSQSTAVVNGRTRRFADV
                     ELQFGALALHVRYGATLDEERARVLEQARQRALARAWAREQQRVRDGEEGARLWTEGE
                     KRQLLSAGRVQGYDGYYVLSVEQYPELADSADNIQFLRQSEIGRR"
     misc_feature    52..945
                     /gene="TENM3"
                     /note="Teneurin Intracellular Region; Region: Ten_N;
                     pfam06484"
                     /db_xref="CDD:461932"
     misc_feature    1585..2049
                     /gene="TENM3"
                     /note="Family of unknown function (DUF5885); Region:
                     DUF5885; pfam19232"
                     /db_xref="CDD:437064"
     misc_feature    2113..2241
                     /gene="TENM3"
                     /note="Delta serrate ligand; Region: DSL; cl19567"
                     /db_xref="CDD:473190"
     misc_feature    2251..2340
                     /gene="TENM3"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    2347..2439
                     /gene="TENM3"
                     /note="acidic double-disulfide repeat; Region:
                     acid_disulf_rpt; NF033662"
                     /db_xref="CDD:411265"
     misc_feature    3457..4515
                     /gene="TENM3"
                     /note="NHL repeat unit of beta-propeller proteins; Region:
                     NHL; cl18310"
                     /db_xref="CDD:302697"
     misc_feature    3544..3657
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3676..3807
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3877..3981
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4045..4164
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4174..7197
                     /gene="TENM3"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; Region:
                     RhsA; COG3209"
                     /db_xref="CDD:442442"
     misc_feature    4231..4332
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4435..4515
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    7864..8097
                     /gene="TENM3"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; Region: Tox-GHH; pfam15636"
                     /db_xref="CDD:464783"
ORIGIN      
        1 tgcgcccgga aggaatgaag tatggacgtg aaggaacgta ggccttactg ctccctgacc
       61 aagaacagac gggagaggga gcggcgctgt gctaattcct cagcagacag tgcggagtgc
      121 agggttccta cacagaagtc ctacagttcc agtgagaccc tgaaagcttt tgatcacgat
      181 tcctcgcggc tgctttatgg aaacagagta aaggatttgg ttcacagaga agcagatgag
      241 ttcaccagac gaggacagaa tttcacccta aggcagttag gcgtttgtga accggaagcc
      301 cgaagaggac tgacgttttg tgcggaaatg gggctccctc acagaggtta ctctatcagt
      361 gcagggtcag acgctgacac tgagaatgaa gcagtgatgt ccccagagca tgccatgaga
      421 ctgtggggca ggggggtcaa gtcaggccgc agctcctgtc tgtcaagccg gtccaactca
      481 gccctcaccc tgacagatac agagcacgaa aacaagtcgg acagtgaaaa cgagcaacct
      541 gcaaacaacc aaggccaatc caccctgcag cctctgccac cttcccataa gcaacactcc
      601 gcacagcatc atccatccat cacttctctc aatagaaact ccctgaccaa tagaaggaac
      661 cagagtccgg ccccgccggc tgctttgccc gccgagctgc aaaccacacc cgagtccgtc
      721 cagctgcagg acagctgggt ccttggcagt aatgtaccac tggaaagcag gcatttccta
      781 ttcaaaacag gaacagggac aacgccactg ttcagtactg caaccccagg atacacaatg
      841 gcatctggct ctgtttactc gccgcctact cggccactac ctagaaacac cctatcaaga
      901 agtgctttta aattcaagaa gtcttcaaag tactgtagct ggaaatgcac cgccctgtgt
      961 gctgtagggg tctcagtgct cctggcaata cttctgtcgt attttatagc aatgcatctc
     1021 tttggcctca actggcagtt acagcagact gaaaatgaca catttgagaa tggaaaagtg
     1081 aattctgata ccatgccaac gaacactgta tcgttacctt ctggtgacaa tggaagattg
     1141 ggtggattta cacaagaaaa taacaccata gattccggag aacttgatat tggccgaaga
     1201 gcaattcaag aggttcctcc tgggatcttc tggagatcac agctccttat tgatcagccg
     1261 cagtttctta aattcaatat ctctcttcag aaagatgcgc tgattggagt atatggccga
     1321 aaaggcttac caccttccca tactcagtac gactttgtgg aactgctgga tggcagcagg
     1381 ctgattgcac gagagcaacg gaacctgctt gagtccgaaa gagctgggcg acaggcgagg
     1441 tccgtcagtc tccacgaggc cggctttatc cagtacttgg attctggaat ctggcatctg
     1501 gctttttata atgatgggaa aagtgcagag caggtgtcct tcaataccat tgtgatagag
     1561 tctgtggtgg aatgcccccg aaattgccat ggaaatggag agtgtgtttc tggaacttgc
     1621 cattgttttc caggctttct aggtccggat tgttcaagag cagcctgtcc agtgctgtgt
     1681 agtggcaacg gccagtactc caagggccgc tgcctctgtt tcagtggctg gaagggcacc
     1741 gagtgtgatg taccaaatac gcagtgtatc gacccgcagt gcgggggtcg tgggatttgt
     1801 atcgtgggct cttgtgtttg caactctgga tacaaaggag agaactgtga agaagctgat
     1861 tgtctagacc ctggatgttc taatcatggt gtgtgtatcc atggggaatg tcactgcaat
     1921 ccaggatggg gtggtaacaa ttgtgaaata ctcaagacca tgtgtccaga ccagtgctct
     1981 ggtcatggaa catatcttca agaaagtggc tcctgcactt gtgaccctaa ttggactggc
     2041 ccagactgct caaatgagat ctgttccgcg gactgcggct tgcacggcgt ctgcatgggg
     2101 ggcgcttgcc gctgtgaaga aggctggacg ggcccagcgt gcagtcagag agcctgccac
     2161 ccgcgctgcg ccgagcacgg cacctgcagg gacggcaagt gtgaatgcag ccagggctgg
     2221 aacggcgagc actgcaccat cgaggggtgc cccggtctgt gcaacagcaa tggaagatgc
     2281 acactggacc aaaacggctg gcattgtgtt tgccagccag ggtggagggg agcagggtgt
     2341 gacgtggcca tggagaccct ctgcacagat agcaaggaca atgagggaga tggactcatt
     2401 gactgcatgg atcctgactg ctgtttacag agttcctgcc aaaatcagcc ctactgtcgt
     2461 ggattacctg atccccagga tatcattagc caaagcttac aatcaccatc tcagcaagct
     2521 gccaaaccct tctatgaccg aatcagtttt ctcataggat ctgatagcac ccatgtcata
     2581 cccggagaca gtcctttcaa taagagcctt gcatccgtca tcagaggcca agtactaact
     2641 gctgatggaa cgccacttat tggagtgaac gtctcatttt tccattaccc agaatatgga
     2701 tatactatta cccgccagga tggaatgttt gacttggtgg cgaatggcgg ggcttctcta
     2761 actttggtat ttgaacgatc cccgttcctc actcagtatc atactgtgtg gattccatgg
     2821 aatgtctttt atgtgatgga taccctcgtc atgaagaaag aggagaatga cattcccagc
     2881 tgtgatctaa gtggcttcgt gaggccgaat cctatcattg tgtcatcacc tttatccacc
     2941 ttttttagat cttctcctga agacagtccc attattcccg agacacaggt actccatgaa
     3001 gaaaccacaa ttccaggaac agacttgaaa ctctcctacc tgagttccag agctgccgga
     3061 tataagtcag tacttaagat caccatgacc cagtccgtta tcccatttaa tttaatgaag
     3121 gttcatctga tggtagctgt agtaggaaga ctctttcaaa agtggtttcc tgcctcaccg
     3181 aacttggcct atacttttat atgggataaa acagatgctt ataatcaaaa ggtctatggt
     3241 ctatctgaag ctgttgtgtc ggttggatat gaatatgagt cgtgtttgga cctgactttg
     3301 tgggagaaaa ggactgccat attgcaaggc tacgaattag atgcttccaa catgggcggt
     3361 tggacattaa acaaacatca cgtattggac gttcagaatg gtatactgta caagggaaac
     3421 ggagaaaacc agtttatctc ccaacagcct cctgtcgtca gcagcatcat gggcaacggc
     3481 cggaggcgca gcatctcgtg cccgagctgc aatggtccag ctgacgggaa taaactcttg
     3541 gccccagtgg cgttagcctg tgggatcgac ggcagcctgt acgtggggga cttcaactac
     3601 gtgcggcgga tgttcccttc cgggaacgtg acgagcgtct tagaactgag cagcagccca
     3661 gctcatagat actaccttgc aactgatcca gtctcagggg atttgtatgt ttctgacact
     3721 aacactcgca ggatttatcg cccgaagtca ctcacgggtg caaaagactt gactaaaaat
     3781 ggtgaagtgg ttgcagggac aggagaacag tgccttcctt ttgatgaagc cagatgtggg
     3841 gatggaggga aggctgtgga agccacactc atgagtccca aaggaatggc gatcgacaaa
     3901 aatggattaa tctactttgt cgatggaacc atgatcagaa aagttgatca gaatggaatc
     3961 atatcaactc tcctaggctc taacgacctg acttcagcca gacctttaac ttgtgacaca
     4021 agcatgcaca tcagccaggt acgtctggaa tggcccactg acctagccat taaccctatg
     4081 gataactcca tttatgtcct ggataataat gtagttttac agatcactga aaatcgtcaa
     4141 gtgcgcgttg ctgctgggcg gcccatgcat tgccaggtgc caggagtgga atattctctg
     4201 ggcaagcacg cagttcagac gaccctggag tcggctactg ccattgctgt gtcctacagt
     4261 ggggtcctgt acatcactga aaccgacgaa aagaaaatta accggataag gcaagtcacc
     4321 acagacgggg agatctccct ggttgctggg ataccgtcag agtgtgactg caaaaacgat
     4381 gccaattgtg actgctacca gagcggagat ggctatgcca aagatgccaa actgagcgct
     4441 ccgtcctccc ttgccgcctc tccggatggt accctgtaca ttgcagacct aggaaacatt
     4501 cggatccggg ctgtgtcaaa gaacaagcct ttacttaact ctatgaactt ctatgaagtt
     4561 gcctctccaa ccgatcaaga actctatatc tttgacgtca atggcactca ccagtttact
     4621 gtgagtttag tcactggcga ttatctgtac aattttagct acagcaatga caatgatatt
     4681 actgctgtga ccgacagtaa cggcaatacc cttaggatta gacgggaccc aaatcggatg
     4741 ccagtgcgag tggtgtctcc tgataaccaa gtgatatggt tgaccatagg aacaaatgga
     4801 tgtttgaaaa gcatgaccgc tcaaggactg gaattagttt tgtttactta ccatggcaac
     4861 agcggccttt tagccactaa aagcgatgaa actggatgga caacattttt tgactatgac
     4921 agtgaaggtc gtctgacaaa tgtgacattt ccaaccggag tggtcacaaa cctccatggg
     4981 gacatggaca aggctatcac agtggacctg gagtcatcca gcagagaaga aggtgtcagc
     5041 atcacttcaa acctgtcctc catcgactca ttctacaccg tggctcaaga tcagttaaga
     5101 aacagctacc aggttggtta cgacggctcc cttcgaatcc tgtacgccag tggcctggat
     5161 tcgcactatc agacagagcc acacgttctg gccggcacag ctaacccaac agttgccaaa
     5221 aggaacatga ctcttcctgg tgaaaacggt cagaatttgg tggaatggag attccgaaaa
     5281 gagcaagccc aaggcaaagt caacgtcttt ggtcgaaagc tcagggttaa tggcagaaac
     5341 ctcctttcag ttgactttga tcgaacaacg aagacagaaa agatctatga tgaccaccgt
     5401 aaatttctcc tgaggatcgc ctatgacaca tcagggcatc cgactctctg gctgccgagc
     5461 agcaagctga tggccgtcaa tgtcacctat tcatccacgg gtcaagtggc cagcgtccag
     5521 cgaggaacta cgagtgagaa agtagattac gacggacagg ggagaatcgt ttcccgggtt
     5581 tttgctgacg ggaagacatg gagttacacg tacttggaaa agtccatggt gcttctgctg
     5641 catagccagc ggcagtacat ctttgagtac gacacgtggg accagctgtc ggccatcacc
     5701 atgcccagcg tggctcgcca cacaatgcag accatccgct ccatcggcta ttaccgtaac
     5761 atatacaacc ccccggagag caatgcctcc gtcatcacgg actacaacga gggcgggctg
     5821 cttctccaga cggccttcct gggtacgagt cggagggtcc tattcaagta caggaggcag
     5881 accaggctct cagaaatctt atacgatagc acgagagtca gttttaccta cgatgaaacg
     5941 gcaggagtcc tcaaaacggt aaacctccag agtgatggtt ttatttgcac catcagatac
     6001 aggcaaattg gacctctcat tgacagacag atcttccgct ttagtgaaga tgggatggtg
     6061 aacgcgagat tcgactacag ctatgacaac agctttcggg tgaccagcat gcagggtgtc
     6121 atcaatgaaa ctccgctgcc cattgacctc tatcagttcg atgacatttc tggaaaagtg
     6181 gagcagtttg gaaaatttgg agttatatat tatgatatta accagatcat ttccacagct
     6241 gtaatgactt acacgaagca ctttgacgct cacggccgca tcaaggaaat tcaatatgag
     6301 atcttcaggt cactcatgta ctggattaca attcagtatg ataacatggg tcgggtaacc
     6361 aagagagaga ttaaaatagg gcccttcgcc aacactacca aatatgctta tgagtacgat
     6421 gtcgacggac agctgcagac agtttatctg aatgaaaaaa ttacgtggcg ttacaactac
     6481 gacctgaatg gaaacctcca cctactgaac ccaagtaaca gcgcgcgctt gacgcctctt
     6541 cgctatgacc tgcgagacag gatcacccga ctgggcgatg ttcagtaccg gttggatgaa
     6601 gatggcttcc tgcgtcaaag aggcacagag atctttgagt acagctccaa ggggcttctg
     6661 acccgagtgt acagtaaagg cagcggctgg acagtgatct atcgttacga cggcctggga
     6721 aggcgtgtgt ctagcaagac cagtctggga cagcacctgc agttttttta cgcagacctc
     6781 acttatccca ccaggattac tcacgtctac aaccattcga gttcagagat cacctccctc
     6841 tattatgatc tccaaggaca tctttttgcc atggaaatca gcagcgggga tgaattctac
     6901 atcgcatcag acaacacagg gacaccactg gctgtcttca gcagcaacgg gcttatgctc
     6961 aaacagattc agtacaccgc atacggcgaa atctattttg actccaacat tgactttcag
     7021 ctggtgattg gatttcatgg tggcttgtat gacccgctca caaaattaat ccactttgga
     7081 gaaagggatt atgacatttt ggcaggacga tggacaacgc ctgacataga aatctggaaa
     7141 aggattggga aggacccagc tccctttaac ctgtacatgt ttaggaataa caaccctgca
     7201 agcaaaatcc atgatgtgaa agactacatc acagatgtta acagctggct ggtgacattt
     7261 ggcttccatc tgcacaatgc cattcctggg ttccctgtcc ccaaattcga tctaacggag
     7321 ccttcttacg aactggtgaa gagtcagcag tgggatgatg taccgcccac gtttggagtc
     7381 cagcagcagg tggcgaggca ggccaaggcc ttcctgtccc tgggcaggat ggccgaggtg
     7441 cggggcagcg cgcgccaggg cagcggcgcg ccgtcgtggc tgtggttcgc gacggttaag
     7501 tcgctgatcg gcaagggcgt catgctggcc gtgagccggg gccgcgtgca gaccaacgcg
     7561 ctcaacatcg ccgacgagga ctgcatcaag gtggcggccg tgctcaacag cgccctctac
     7621 ctggaggacc tgcacttcac cgtcgagggc agggacacgc accacttcat caagaccagc
     7681 acgcccgagg gcgacctggg cacgctgcgc ctgacgagcg gccgccgggc gctggagaac
     7741 ggcatcaacg tgaccgtgtc gcagtccacc gccgtggtca acggcaggac ccgcaggttc
     7801 gcggacgtgg agctgcagtt cggcgcgctg gcgctgcatg tgcgctacgg cgcgaccctg
     7861 gacgaggaga gggcgcgcgt gctggagcag gcgcggcagc gcgcgctcgc ccgggcctgg
     7921 gcgcgcgagc agcagcgcgt gcgcgacggc gaggagggcg cgcgcctctg gacggagggc
     7981 gagaagcggc agctgctgag cgccggcagg gtgcagggct acgacggcta ctacgtgctc
     8041 tcggtggagc agtaccccga gctggcagac agcgcggaca acatccagtt cctccgccag
     8101 agcgagatcg gccgcaggta acgcccgcgc cggcggcggg gaagcgcgcg cgcgcgggcg
     8161 cgcgggggcc gagccggcgg ggccgcctgc ctctccagcc ccaggcgcag cgccacctct
     8221 gcgcagatgt gtctggggcg cgagccgagg gggctccccg gcaccgagga gagccagact
     8281 gctcttaaaa aaaaaaaaaa ccaccccccc caaatcaaag cagacagaca aaaacaaaaa
     8341 cctttcttct gaatgacctt aaaggtgatc ggctttaaag aatatgttta catatgcata
     8401 tcgctgcact cagttggacg gaaagtattg cgaggaaaac atcattaaag gaaaaaaaaa
     8461 aaaagcccaa ccattttgcc ccgggccgtc tgttcttcga ggcactgtgt ttaaagaagg
     8521 tagagatgca cacagtgttt ccagatgtta cccagctgtc gacttttgct tacaagaagt
     8581 agtctctctg catagggtgt gatgtatatc cctgttaatg ttagaatgtg aggcagagtt
     8641 actgttcctg gacgacccga ctgcttcccc agtgctgctt tgtaaaagga cattggcaca
     8701 agtgacttct gccggggcgg ggatttctaa gggattttac gaggccaacg tggtgtgcct
     8761 cgcggggaag aacaccagcc cacacagaat ccttgtcact gatgatgagc aaaggaagcc
     8821 ctgatttttt tgtaaattat gtgagacaag ttgtttatgg atttttatat gaattacaat
     8881 ttactgtaca tcaaatatta gtctcagagg agttaattta tgtaaagtgt ttaaaaagtt
     8941 tatacttaaa aataaaacga taaaaacatg
//
LOCUS       XM_032618480            8967 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus teneurin transmembrane protein 3 (TENM3),
            transcript variant X4, mRNA.
ACCESSION   XM_032618480
VERSION     XM_032618480.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8967
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8967
                     /gene="TENM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746779"
     CDS             22..8118
                     /gene="TENM3"
                     /codon_start=1
                     /product="teneurin-3 isoform X4"
                     /protein_id="XP_032474371.1"
                     /db_xref="GeneID:116746779"
                     /translation="MDVKERRPYCSLTKNRRERERRCANSSADSAECRVPTQKSYSSS
                     ETLKAFDHDSSRLLYGNRVKDLVHREADEFTRRGQNFTLRQLGVCEPEARRGLTFCAE
                     MGLPHRGYSISAGSDADTENEAVMSPEHAMRLWGRGVKSGRSSCLSSRSNSALTLTDT
                     EHENKSDSENEQPANNQGQSTLQPLPPSHKQHSAQHHPSITSLNRNSLTNRRNQSPAP
                     PAALPAELQTTPESVQLQDSWVLGSNVPLESRHFLFKTGTGTTPLFSTATPGYTMASG
                     SVYSPPTRPLPRNTLSRSAFKFKKSSKYCSWKCTALCAVGVSVLLAILLSYFIAMHLF
                     GLNWQLQQTENDTFENGKVNSDTMPTNTVSLPSGDNGRLGGFTQENNTIDSGELDIGR
                     RAIQEVPPGIFWRSQLLIDQPQFLKFNISLQKDALIGVYGRKGLPPSHTQYDFVELLD
                     GSRLIAREQRNLLESERAGRQARSVSLHEAGFIQYLDSGIWHLAFYNDGKSAEQVSFN
                     TIVIESVVECPRNCHGNGECVSGTCHCFPGFLGPDCSRAACPVLCSGNGQYSKGRCLC
                     FSGWKGTECDVPNTQCIDPQCGGRGICIVGSCVCNSGYKGENCEEADCLDPGCSNHGV
                     CIHGECHCNPGWGGNNCEILKTMCPDQCSGHGTYLQESGSCTCDPNWTGPDCSNEICS
                     ADCGLHGVCMGGACRCEEGWTGPACSQRACHPRCAEHGTCRDGKCECSQGWNGEHCTI
                     EGCPGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVAMETLCTDSKDNEGDGLIDCMDP
                     DCCLQSSCQNQPYCRGLPDPQDIISQSLQSPSQQAAKPFYDRISFLIGSDSTHVIPGD
                     SPFNKSLASVIRGQVLTADGTPLIGVNVSFFHYPEYGYTITRQDGMFDLVANGGASLT
                     LVFERSPFLTQYHTVWIPWNVFYVMDTLVMKKEENDIPSCDLSGFVRPNPIIVSSPLS
                     TFFRSSPEDSPIIPETQVLHEETTIPGTDLKLSYLSSRAAGYKSVLKITMTQSVIPFN
                     LMKVHLMVAVVGRLFQKWFPASPNLAYTFIWDKTDAYNQKVYGLSEAVVSVGYEYESC
                     LDLTLWEKRTAILQGYELDASNMGGWTLNKHHVLDVQNGILYKGNGENQFISQQPPVV
                     SSIMGNGRRRSISCPSCNGPADGNKLLAPVALACGIDGSLYVGDFNYVRRMFPSGNVT
                     SVLELSSPAHRYYLATDPVSGDLYVSDTNTRRIYRPKSLTGAKDLTKNGEVVAGTGEQ
                     CLPFDEARCGDGGKAVEATLMSPKGMAIDKNGLIYFVDGTMIRKVDQNGIISTLLGSN
                     DLTSARPLTCDTSMHISQVRLEWPTDLAINPMDNSIYVLDNNVVLQITENRQVRVAAG
                     RPMHCQVPGVEYSLGKHAVQTTLESATAIAVSYSGVLYITETDEKKINRIRQVTTDGE
                     ISLVAGIPSECDCKNDANCDCYQSGDGYAKDAKLSAPSSLAASPDGTLYIADLGNIRI
                     RAVSKNKPLLNSMNFYEVASPTDQELYIFDVNGTHQFTVSLVTGDYLYNFSYSNDNDI
                     TAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLTIGTNGCLKSMTAQGLELVLFTYH
                     GNSGLLATKSDETGWTTFFDYDSEGRLTNVTFPTGVVTNLHGDMDKAITVDLESSSRE
                     EGVSITSNLSSIDSFYTVAQDQLRNSYQVGYDGSLRILYASGLDSHYQTEPHVLAGTA
                     NPTVAKRNMTLPGENGQNLVEWRFRKEQAQGKVNVFGRKLRVNGRNLLSVDFDRTTKT
                     EKIYDDHRKFLLRIAYDTSGHPTLWLPSSKLMAVNVTYSSTGQVASVQRGTTSEKVDY
                     DGQGRIVSRVFADGKTWSYTYLEKSMVLLLHSQRQYIFEYDTWDQLSAITMPSVARHT
                     MQTIRSIGYYRNIYNPPESNASVITDYNEGGLLLQTAFLGTSRRVLFKYRRQTRLSEI
                     LYDSTRVSFTYDETAGVLKTVNLQSDGFICTIRYRQIGPLIDRQIFRFSEDGMVNARF
                     DYSYDNSFRVTSMQGVINETPLPIDLYQFDDISGKVEQFGKFGVIYYDINQIISTAVM
                     TYTKHFDAHGRIKEIQYEIFRSLMYWITIQYDNMGRVTKREIKIGPFANTTKYAYEYD
                     VDGQLQTVYLNEKITWRYNYDLNGNLHLLNPSNSARLTPLRYDLRDRITRLGDVQYRL
                     DEDGFLRQRGTEIFEYSSKGLLTRVYSKGSGWTVIYRYDGLGRRVSSKTSLGQHLQFF
                     YADLTYPTRITHVYNHSSSEITSLYYDLQGHLFAMEISSGDEFYIASDNTGTPLAVFS
                     SNGLMLKQIQYTAYGEIYFDSNIDFQLVIGFHGGLYDPLTKLIHFGERDYDILAGRWT
                     TPDIEIWKRIGKDPAPFNLYMFRNNNPASKIHDVKDYITDVNSWLVTFGFHLHNAIPG
                     FPVPKFDLTEPSYELVKSQQWDDVPPTFGVQQQVARQAKAFLSLGRMAEVRGSARQGS
                     GAPSWLWFATVKSLIGKGVMLAVSRGRVQTNALNIADEDCIKVAAVLNSALYLEDLHF
                     TVEGRDTHHFIKTSTPEGDLGTLRLTSGRRALENGINVTVSQSTAVVNGRTRRFADVE
                     LQFGALALHVRYGATLDEERARVLEQARQRALARAWAREQQRVRDGEEGARLWTEGEK
                     RQLLSAGRVQGYDGYYVLSVEQYPELADSADNIQFLRQSEIGRR"
     misc_feature    52..945
                     /gene="TENM3"
                     /note="Teneurin Intracellular Region; Region: Ten_N;
                     pfam06484"
                     /db_xref="CDD:461932"
     misc_feature    1585..2049
                     /gene="TENM3"
                     /note="Family of unknown function (DUF5885); Region:
                     DUF5885; pfam19232"
                     /db_xref="CDD:437064"
     misc_feature    2113..2241
                     /gene="TENM3"
                     /note="Delta serrate ligand; Region: DSL; cl19567"
                     /db_xref="CDD:473190"
     misc_feature    2251..2340
                     /gene="TENM3"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    2347..2439
                     /gene="TENM3"
                     /note="acidic double-disulfide repeat; Region:
                     acid_disulf_rpt; NF033662"
                     /db_xref="CDD:411265"
     misc_feature    3457..4512
                     /gene="TENM3"
                     /note="NHL repeat unit of beta-propeller proteins; Region:
                     NHL; cl18310"
                     /db_xref="CDD:302697"
     misc_feature    3655..3804
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3874..3978
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4042..4161
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4171..7194
                     /gene="TENM3"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; Region:
                     RhsA; COG3209"
                     /db_xref="CDD:442442"
     misc_feature    4228..4329
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    4432..4512
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    7861..8094
                     /gene="TENM3"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; Region: Tox-GHH; pfam15636"
                     /db_xref="CDD:464783"
ORIGIN      
        1 tgcgcccgga aggaatgaag tatggacgtg aaggaacgta ggccttactg ctccctgacc
       61 aagaacagac gggagaggga gcggcgctgt gctaattcct cagcagacag tgcggagtgc
      121 agggttccta cacagaagtc ctacagttcc agtgagaccc tgaaagcttt tgatcacgat
      181 tcctcgcggc tgctttatgg aaacagagta aaggatttgg ttcacagaga agcagatgag
      241 ttcaccagac gaggacagaa tttcacccta aggcagttag gcgtttgtga accggaagcc
      301 cgaagaggac tgacgttttg tgcggaaatg gggctccctc acagaggtta ctctatcagt
      361 gcagggtcag acgctgacac tgagaatgaa gcagtgatgt ccccagagca tgccatgaga
      421 ctgtggggca ggggggtcaa gtcaggccgc agctcctgtc tgtcaagccg gtccaactca
      481 gccctcaccc tgacagatac agagcacgaa aacaagtcgg acagtgaaaa cgagcaacct
      541 gcaaacaacc aaggccaatc caccctgcag cctctgccac cttcccataa gcaacactcc
      601 gcacagcatc atccatccat cacttctctc aatagaaact ccctgaccaa tagaaggaac
      661 cagagtccgg ccccgccggc tgctttgccc gccgagctgc aaaccacacc cgagtccgtc
      721 cagctgcagg acagctgggt ccttggcagt aatgtaccac tggaaagcag gcatttccta
      781 ttcaaaacag gaacagggac aacgccactg ttcagtactg caaccccagg atacacaatg
      841 gcatctggct ctgtttactc gccgcctact cggccactac ctagaaacac cctatcaaga
      901 agtgctttta aattcaagaa gtcttcaaag tactgtagct ggaaatgcac cgccctgtgt
      961 gctgtagggg tctcagtgct cctggcaata cttctgtcgt attttatagc aatgcatctc
     1021 tttggcctca actggcagtt acagcagact gaaaatgaca catttgagaa tggaaaagtg
     1081 aattctgata ccatgccaac gaacactgta tcgttacctt ctggtgacaa tggaagattg
     1141 ggtggattta cacaagaaaa taacaccata gattccggag aacttgatat tggccgaaga
     1201 gcaattcaag aggttcctcc tgggatcttc tggagatcac agctccttat tgatcagccg
     1261 cagtttctta aattcaatat ctctcttcag aaagatgcgc tgattggagt atatggccga
     1321 aaaggcttac caccttccca tactcagtac gactttgtgg aactgctgga tggcagcagg
     1381 ctgattgcac gagagcaacg gaacctgctt gagtccgaaa gagctgggcg acaggcgagg
     1441 tccgtcagtc tccacgaggc cggctttatc cagtacttgg attctggaat ctggcatctg
     1501 gctttttata atgatgggaa aagtgcagag caggtgtcct tcaataccat tgtgatagag
     1561 tctgtggtgg aatgcccccg aaattgccat ggaaatggag agtgtgtttc tggaacttgc
     1621 cattgttttc caggctttct aggtccggat tgttcaagag cagcctgtcc agtgctgtgt
     1681 agtggcaacg gccagtactc caagggccgc tgcctctgtt tcagtggctg gaagggcacc
     1741 gagtgtgatg taccaaatac gcagtgtatc gacccgcagt gcgggggtcg tgggatttgt
     1801 atcgtgggct cttgtgtttg caactctgga tacaaaggag agaactgtga agaagctgat
     1861 tgtctagacc ctggatgttc taatcatggt gtgtgtatcc atggggaatg tcactgcaat
     1921 ccaggatggg gtggtaacaa ttgtgaaata ctcaagacca tgtgtccaga ccagtgctct
     1981 ggtcatggaa catatcttca agaaagtggc tcctgcactt gtgaccctaa ttggactggc
     2041 ccagactgct caaatgagat ctgttccgcg gactgcggct tgcacggcgt ctgcatgggg
     2101 ggcgcttgcc gctgtgaaga aggctggacg ggcccagcgt gcagtcagag agcctgccac
     2161 ccgcgctgcg ccgagcacgg cacctgcagg gacggcaagt gtgaatgcag ccagggctgg
     2221 aacggcgagc actgcaccat cgaggggtgc cccggtctgt gcaacagcaa tggaagatgc
     2281 acactggacc aaaacggctg gcattgtgtt tgccagccag ggtggagggg agcagggtgt
     2341 gacgtggcca tggagaccct ctgcacagat agcaaggaca atgagggaga tggactcatt
     2401 gactgcatgg atcctgactg ctgtttacag agttcctgcc aaaatcagcc ctactgtcgt
     2461 ggattacctg atccccagga tatcattagc caaagcttac aatcaccatc tcagcaagct
     2521 gccaaaccct tctatgaccg aatcagtttt ctcataggat ctgatagcac ccatgtcata
     2581 cccggagaca gtcctttcaa taagagcctt gcatccgtca tcagaggcca agtactaact
     2641 gctgatggaa cgccacttat tggagtgaac gtctcatttt tccattaccc agaatatgga
     2701 tatactatta cccgccagga tggaatgttt gacttggtgg cgaatggcgg ggcttctcta
     2761 actttggtat ttgaacgatc cccgttcctc actcagtatc atactgtgtg gattccatgg
     2821 aatgtctttt atgtgatgga taccctcgtc atgaagaaag aggagaatga cattcccagc
     2881 tgtgatctaa gtggcttcgt gaggccgaat cctatcattg tgtcatcacc tttatccacc
     2941 ttttttagat cttctcctga agacagtccc attattcccg agacacaggt actccatgaa
     3001 gaaaccacaa ttccaggaac agacttgaaa ctctcctacc tgagttccag agctgccgga
     3061 tataagtcag tacttaagat caccatgacc cagtccgtta tcccatttaa tttaatgaag
     3121 gttcatctga tggtagctgt agtaggaaga ctctttcaaa agtggtttcc tgcctcaccg
     3181 aacttggcct atacttttat atgggataaa acagatgctt ataatcaaaa ggtctatggt
     3241 ctatctgaag ctgttgtgtc ggttggatat gaatatgagt cgtgtttgga cctgactttg
     3301 tgggagaaaa ggactgccat attgcaaggc tacgaattag atgcttccaa catgggcggt
     3361 tggacattaa acaaacatca cgtattggac gttcagaatg gtatactgta caagggaaac
     3421 ggagaaaacc agtttatctc ccaacagcct cctgtcgtca gcagcatcat gggcaacggc
     3481 cggaggcgca gcatctcgtg cccgagctgc aatggtccag ctgacgggaa taaactcttg
     3541 gccccagtgg cgttagcctg tgggatcgac ggcagcctgt acgtggggga cttcaactac
     3601 gtgcggcgga tgttcccttc cgggaacgtg acgagcgtct tagaactgag cagcccagct
     3661 catagatact accttgcaac tgatccagtc tcaggggatt tgtatgtttc tgacactaac
     3721 actcgcagga tttatcgccc gaagtcactc acgggtgcaa aagacttgac taaaaatggt
     3781 gaagtggttg cagggacagg agaacagtgc cttccttttg atgaagccag atgtggggat
     3841 ggagggaagg ctgtggaagc cacactcatg agtcccaaag gaatggcgat cgacaaaaat
     3901 ggattaatct actttgtcga tggaaccatg atcagaaaag ttgatcagaa tggaatcata
     3961 tcaactctcc taggctctaa cgacctgact tcagccagac ctttaacttg tgacacaagc
     4021 atgcacatca gccaggtacg tctggaatgg cccactgacc tagccattaa ccctatggat
     4081 aactccattt atgtcctgga taataatgta gttttacaga tcactgaaaa tcgtcaagtg
     4141 cgcgttgctg ctgggcggcc catgcattgc caggtgccag gagtggaata ttctctgggc
     4201 aagcacgcag ttcagacgac cctggagtcg gctactgcca ttgctgtgtc ctacagtggg
     4261 gtcctgtaca tcactgaaac cgacgaaaag aaaattaacc ggataaggca agtcaccaca
     4321 gacggggaga tctccctggt tgctgggata ccgtcagagt gtgactgcaa aaacgatgcc
     4381 aattgtgact gctaccagag cggagatggc tatgccaaag atgccaaact gagcgctccg
     4441 tcctcccttg ccgcctctcc ggatggtacc ctgtacattg cagacctagg aaacattcgg
     4501 atccgggctg tgtcaaagaa caagccttta cttaactcta tgaacttcta tgaagttgcc
     4561 tctccaaccg atcaagaact ctatatcttt gacgtcaatg gcactcacca gtttactgtg
     4621 agtttagtca ctggcgatta tctgtacaat tttagctaca gcaatgacaa tgatattact
     4681 gctgtgaccg acagtaacgg caataccctt aggattagac gggacccaaa tcggatgcca
     4741 gtgcgagtgg tgtctcctga taaccaagtg atatggttga ccataggaac aaatggatgt
     4801 ttgaaaagca tgaccgctca aggactggaa ttagttttgt ttacttacca tggcaacagc
     4861 ggccttttag ccactaaaag cgatgaaact ggatggacaa cattttttga ctatgacagt
     4921 gaaggtcgtc tgacaaatgt gacatttcca accggagtgg tcacaaacct ccatggggac
     4981 atggacaagg ctatcacagt ggacctggag tcatccagca gagaagaagg tgtcagcatc
     5041 acttcaaacc tgtcctccat cgactcattc tacaccgtgg ctcaagatca gttaagaaac
     5101 agctaccagg ttggttacga cggctccctt cgaatcctgt acgccagtgg cctggattcg
     5161 cactatcaga cagagccaca cgttctggcc ggcacagcta acccaacagt tgccaaaagg
     5221 aacatgactc ttcctggtga aaacggtcag aatttggtgg aatggagatt ccgaaaagag
     5281 caagcccaag gcaaagtcaa cgtctttggt cgaaagctca gggttaatgg cagaaacctc
     5341 ctttcagttg actttgatcg aacaacgaag acagaaaaga tctatgatga ccaccgtaaa
     5401 tttctcctga ggatcgccta tgacacatca gggcatccga ctctctggct gccgagcagc
     5461 aagctgatgg ccgtcaatgt cacctattca tccacgggtc aagtggccag cgtccagcga
     5521 ggaactacga gtgagaaagt agattacgac ggacagggga gaatcgtttc ccgggttttt
     5581 gctgacggga agacatggag ttacacgtac ttggaaaagt ccatggtgct tctgctgcat
     5641 agccagcggc agtacatctt tgagtacgac acgtgggacc agctgtcggc catcaccatg
     5701 cccagcgtgg ctcgccacac aatgcagacc atccgctcca tcggctatta ccgtaacata
     5761 tacaaccccc cggagagcaa tgcctccgtc atcacggact acaacgaggg cgggctgctt
     5821 ctccagacgg ccttcctggg tacgagtcgg agggtcctat tcaagtacag gaggcagacc
     5881 aggctctcag aaatcttata cgatagcacg agagtcagtt ttacctacga tgaaacggca
     5941 ggagtcctca aaacggtaaa cctccagagt gatggtttta tttgcaccat cagatacagg
     6001 caaattggac ctctcattga cagacagatc ttccgcttta gtgaagatgg gatggtgaac
     6061 gcgagattcg actacagcta tgacaacagc tttcgggtga ccagcatgca gggtgtcatc
     6121 aatgaaactc cgctgcccat tgacctctat cagttcgatg acatttctgg aaaagtggag
     6181 cagtttggaa aatttggagt tatatattat gatattaacc agatcatttc cacagctgta
     6241 atgacttaca cgaagcactt tgacgctcac ggccgcatca aggaaattca atatgagatc
     6301 ttcaggtcac tcatgtactg gattacaatt cagtatgata acatgggtcg ggtaaccaag
     6361 agagagatta aaatagggcc cttcgccaac actaccaaat atgcttatga gtacgatgtc
     6421 gacggacagc tgcagacagt ttatctgaat gaaaaaatta cgtggcgtta caactacgac
     6481 ctgaatggaa acctccacct actgaaccca agtaacagcg cgcgcttgac gcctcttcgc
     6541 tatgacctgc gagacaggat cacccgactg ggcgatgttc agtaccggtt ggatgaagat
     6601 ggcttcctgc gtcaaagagg cacagagatc tttgagtaca gctccaaggg gcttctgacc
     6661 cgagtgtaca gtaaaggcag cggctggaca gtgatctatc gttacgacgg cctgggaagg
     6721 cgtgtgtcta gcaagaccag tctgggacag cacctgcagt ttttttacgc agacctcact
     6781 tatcccacca ggattactca cgtctacaac cattcgagtt cagagatcac ctccctctat
     6841 tatgatctcc aaggacatct ttttgccatg gaaatcagca gcggggatga attctacatc
     6901 gcatcagaca acacagggac accactggct gtcttcagca gcaacgggct tatgctcaaa
     6961 cagattcagt acaccgcata cggcgaaatc tattttgact ccaacattga ctttcagctg
     7021 gtgattggat ttcatggtgg cttgtatgac ccgctcacaa aattaatcca ctttggagaa
     7081 agggattatg acattttggc aggacgatgg acaacgcctg acatagaaat ctggaaaagg
     7141 attgggaagg acccagctcc ctttaacctg tacatgttta ggaataacaa ccctgcaagc
     7201 aaaatccatg atgtgaaaga ctacatcaca gatgttaaca gctggctggt gacatttggc
     7261 ttccatctgc acaatgccat tcctgggttc cctgtcccca aattcgatct aacggagcct
     7321 tcttacgaac tggtgaagag tcagcagtgg gatgatgtac cgcccacgtt tggagtccag
     7381 cagcaggtgg cgaggcaggc caaggccttc ctgtccctgg gcaggatggc cgaggtgcgg
     7441 ggcagcgcgc gccagggcag cggcgcgccg tcgtggctgt ggttcgcgac ggttaagtcg
     7501 ctgatcggca agggcgtcat gctggccgtg agccggggcc gcgtgcagac caacgcgctc
     7561 aacatcgccg acgaggactg catcaaggtg gcggccgtgc tcaacagcgc cctctacctg
     7621 gaggacctgc acttcaccgt cgagggcagg gacacgcacc acttcatcaa gaccagcacg
     7681 cccgagggcg acctgggcac gctgcgcctg acgagcggcc gccgggcgct ggagaacggc
     7741 atcaacgtga ccgtgtcgca gtccaccgcc gtggtcaacg gcaggacccg caggttcgcg
     7801 gacgtggagc tgcagttcgg cgcgctggcg ctgcatgtgc gctacggcgc gaccctggac
     7861 gaggagaggg cgcgcgtgct ggagcaggcg cggcagcgcg cgctcgcccg ggcctgggcg
     7921 cgcgagcagc agcgcgtgcg cgacggcgag gagggcgcgc gcctctggac ggagggcgag
     7981 aagcggcagc tgctgagcgc cggcagggtg cagggctacg acggctacta cgtgctctcg
     8041 gtggagcagt accccgagct ggcagacagc gcggacaaca tccagttcct ccgccagagc
     8101 gagatcggcc gcaggtaacg cccgcgccgg cggcggggaa gcgcgcgcgc gcgggcgcgc
     8161 gggggccgag ccggcggggc cgcctgcctc tccagcccca ggcgcagcgc cacctctgcg
     8221 cagatgtgtc tggggcgcga gccgaggggg ctccccggca ccgaggagag ccagactgct
     8281 cttaaaaaaa aaaaaaacca ccccccccaa atcaaagcag acagacaaaa acaaaaacct
     8341 ttcttctgaa tgaccttaaa ggtgatcggc tttaaagaat atgtttacat atgcatatcg
     8401 ctgcactcag ttggacggaa agtattgcga ggaaaacatc attaaaggaa aaaaaaaaaa
     8461 agcccaacca ttttgccccg ggccgtctgt tcttcgaggc actgtgttta aagaaggtag
     8521 agatgcacac agtgtttcca gatgttaccc agctgtcgac ttttgcttac aagaagtagt
     8581 ctctctgcat agggtgtgat gtatatccct gttaatgtta gaatgtgagg cagagttact
     8641 gttcctggac gacccgactg cttccccagt gctgctttgt aaaaggacat tggcacaagt
     8701 gacttctgcc ggggcgggga tttctaaggg attttacgag gccaacgtgg tgtgcctcgc
     8761 ggggaagaac accagcccac acagaatcct tgtcactgat gatgagcaaa ggaagccctg
     8821 atttttttgt aaattatgtg agacaagttg tttatggatt tttatatgaa ttacaattta
     8881 ctgtacatca aatattagtc tcagaggagt taatttatgt aaagtgttta aaaagtttat
     8941 acttaaaaat aaaacgataa aaacatg
//
LOCUS       XM_032618481            8498 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus teneurin transmembrane protein 3 (TENM3),
            transcript variant X5, mRNA.
ACCESSION   XM_032618481
VERSION     XM_032618481.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8498
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8498
                     /gene="TENM3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746779"
     CDS             369..7649
                     /gene="TENM3"
                     /codon_start=1
                     /product="teneurin-3 isoform X5"
                     /protein_id="XP_032474372.1"
                     /db_xref="GeneID:116746779"
                     /translation="MASGSVYSPPTRPLPRNTLSRSAFKFKKSSKYCSWKCTALCAVG
                     VSVLLAILLSYFIAMHLFGLNWQLQQTENDTFENGKVNSDTMPTNTVSLPSGDNGRLG
                     GFTQENNTIDSGELDIGRRAIQEVPPGIFWRSQLLIDQPQFLKFNISLQKDALIGVYG
                     RKGLPPSHTQYDFVELLDGSRLIAREQRNLLESERAGRQARSVSLHEAGFIQYLDSGI
                     WHLAFYNDGKSAEQVSFNTIVIESVVECPRNCHGNGECVSGTCHCFPGFLGPDCSRAA
                     CPVLCSGNGQYSKGRCLCFSGWKGTECDVPNTQCIDPQCGGRGICIVGSCVCNSGYKG
                     ENCEEADCLDPGCSNHGVCIHGECHCNPGWGGNNCEILKTMCPDQCSGHGTYLQESGS
                     CTCDPNWTGPDCSNEICSADCGLHGVCMGGACRCEEGWTGPACSQRACHPRCAEHGTC
                     RDGKCECSQGWNGEHCTIEGCPGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVAMETL
                     CTDSKDNEGDGLIDCMDPDCCLQSSCQNQPYCRGLPDPQDIISQSLQSPSQQAAKPFY
                     DRISFLIGSDSTHVIPGDSPFNKSLASVIRGQVLTADGTPLIGVNVSFFHYPEYGYTI
                     TRQDGMFDLVANGGASLTLVFERSPFLTQYHTVWIPWNVFYVMDTLVMKKEENDIPSC
                     DLSGFVRPNPIIVSSPLSTFFRSSPEDSPIIPETQVLHEETTIPGTDLKLSYLSSRAA
                     GYKSVLKITMTQSVIPFNLMKVHLMVAVVGRLFQKWFPASPNLAYTFIWDKTDAYNQK
                     VYGLSEAVVSVGYEYESCLDLTLWEKRTAILQGYELDASNMGGWTLNKHHVLDVQNGI
                     LYKGNGENQFISQQPPVVSSIMGNGRRRSISCPSCNGPADGNKLLAPVALACGIDGSL
                     YVGDFNYVRRMFPSGNVTSVLELSSPAHRYYLATDPVSGDLYVSDTNTRRIYRPKSLT
                     GAKDLTKNGEVVAGTGEQCLPFDEARCGDGGKAVEATLMSPKGMAIDKNGLIYFVDGT
                     MIRKVDQNGIISTLLGSNDLTSARPLTCDTSMHISQVRLEWPTDLAINPMDNSIYVLD
                     NNVVLQITENRQVRVAAGRPMHCQVPGVEYSLGKHAVQTTLESATAIAVSYSGVLYIT
                     ETDEKKINRIRQVTTDGEISLVAGIPSECDCKNDANCDCYQSGDGYAKDAKLSAPSSL
                     AASPDGTLYIADLGNIRIRAVSKNKPLLNSMNFYEVASPTDQELYIFDVNGTHQFTVS
                     LVTGDYLYNFSYSNDNDITAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLTIGTNG
                     CLKSMTAQGLELVLFTYHGNSGLLATKSDETGWTTFFDYDSEGRLTNVTFPTGVVTNL
                     HGDMDKAITVDLESSSREEGVSITSNLSSIDSFYTVAQDQLRNSYQVGYDGSLRILYA
                     SGLDSHYQTEPHVLAGTANPTVAKRNMTLPGENGQNLVEWRFRKEQAQGKVNVFGRKL
                     RVNGRNLLSVDFDRTTKTEKIYDDHRKFLLRIAYDTSGHPTLWLPSSKLMAVNVTYSS
                     TGQVASVQRGTTSEKVDYDGQGRIVSRVFADGKTWSYTYLEKSMVLLLHSQRQYIFEY
                     DTWDQLSAITMPSVARHTMQTIRSIGYYRNIYNPPESNASVITDYNEGGLLLQTAFLG
                     TSRRVLFKYRRQTRLSEILYDSTRVSFTYDETAGVLKTVNLQSDGFICTIRYRQIGPL
                     IDRQIFRFSEDGMVNARFDYSYDNSFRVTSMQGVINETPLPIDLYQFDDISGKVEQFG
                     KFGVIYYDINQIISTAVMTYTKHFDAHGRIKEIQYEIFRSLMYWITIQYDNMGRVTKR
                     EIKIGPFANTTKYAYEYDVDGQLQTVYLNEKITWRYNYDLNGNLHLLNPSNSARLTPL
                     RYDLRDRITRLGDVQYRLDEDGFLRQRGTEIFEYSSKGLLTRVYSKGSGWTVIYRYDG
                     LGRRVSSKTSLGQHLQFFYADLTYPTRITHVYNHSSSEITSLYYDLQGHLFAMEISSG
                     DEFYIASDNTGTPLAVFSSNGLMLKQIQYTAYGEIYFDSNIDFQLVIGFHGGLYDPLT
                     KLIHFGERDYDILAGRWTTPDIEIWKRIGKDPAPFNLYMFRNNNPASKIHDVKDYITD
                     VNSWLVTFGFHLHNAIPGFPVPKFDLTEPSYELVKSQQWDDVPPTFGVQQQVARQAKA
                     FLSLGRMAEVRGSARQGSGAPSWLWFATVKSLIGKGVMLAVSRGRVQTNALNIADEDC
                     IKVAAVLNSALYLEDLHFTVEGRDTHHFIKTSTPEGDLGTLRLTSGRRALENGINVTV
                     SQSTAVVNGRTRRFADVELQFGALALHVRYGATLDEERARVLEQARQRALARAWAREQ
                     QRVRDGEEGARLWTEGEKRQLLSAGRVQGYDGYYVLSVEQYPELADSADNIQFLRQSE
                     IGRR"
     misc_feature    <369..476
                     /gene="TENM3"
                     /note="Teneurin Intracellular Region; Region: Ten_N;
                     pfam06484"
                     /db_xref="CDD:461932"
     misc_feature    1116..1580
                     /gene="TENM3"
                     /note="Family of unknown function (DUF5885); Region:
                     DUF5885; pfam19232"
                     /db_xref="CDD:437064"
     misc_feature    1644..1772
                     /gene="TENM3"
                     /note="Delta serrate ligand; Region: DSL; cl19567"
                     /db_xref="CDD:473190"
     misc_feature    1782..1871
                     /gene="TENM3"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
     misc_feature    1878..1970
                     /gene="TENM3"
                     /note="acidic double-disulfide repeat; Region:
                     acid_disulf_rpt; NF033662"
                     /db_xref="CDD:411265"
     misc_feature    2988..4043
                     /gene="TENM3"
                     /note="NHL repeat unit of beta-propeller proteins; Region:
                     NHL; cl18310"
                     /db_xref="CDD:302697"
     misc_feature    3186..3335
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3405..3509
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3573..3692
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3702..6725
                     /gene="TENM3"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; Region:
                     RhsA; COG3209"
                     /db_xref="CDD:442442"
     misc_feature    3759..3860
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    3963..4043
                     /gene="TENM3"
                     /note="NHL repeat [structural motif]; Region: NHL repeat"
                     /db_xref="CDD:271323"
     misc_feature    7392..7625
                     /gene="TENM3"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; Region: Tox-GHH; pfam15636"
                     /db_xref="CDD:464783"
ORIGIN      
        1 gcggcagctt ggtagcgccg ggctcggctc tgcacggcca cagcgagggc gcgcggcggc
       61 aagagcaacc tgcaaacaac caaggccaat ccaccctgca gcctctgcca ccttcccata
      121 agcaacactc cgcacagcat catccatcca tcacttctct caatagaaac tccctgacca
      181 atagaaggaa ccagagtccg gccccgccgg ctgctttgcc cgccgagctg caaaccacac
      241 ccgagtccgt ccagctgcag gacagctggg tccttggcag taatgtacca ctggaaagca
      301 ggcatttcct attcaaaaca ggaacaggga caacgccact gttcagtact gcaaccccag
      361 gatacacaat ggcatctggc tctgtttact cgccgcctac tcggccacta cctagaaaca
      421 ccctatcaag aagtgctttt aaattcaaga agtcttcaaa gtactgtagc tggaaatgca
      481 ccgccctgtg tgctgtaggg gtctcagtgc tcctggcaat acttctgtcg tattttatag
      541 caatgcatct ctttggcctc aactggcagt tacagcagac tgaaaatgac acatttgaga
      601 atggaaaagt gaattctgat accatgccaa cgaacactgt atcgttacct tctggtgaca
      661 atggaagatt gggtggattt acacaagaaa ataacaccat agattccgga gaacttgata
      721 ttggccgaag agcaattcaa gaggttcctc ctgggatctt ctggagatca cagctcctta
      781 ttgatcagcc gcagtttctt aaattcaata tctctcttca gaaagatgcg ctgattggag
      841 tatatggccg aaaaggctta ccaccttccc atactcagta cgactttgtg gaactgctgg
      901 atggcagcag gctgattgca cgagagcaac ggaacctgct tgagtccgaa agagctgggc
      961 gacaggcgag gtccgtcagt ctccacgagg ccggctttat ccagtacttg gattctggaa
     1021 tctggcatct ggctttttat aatgatggga aaagtgcaga gcaggtgtcc ttcaatacca
     1081 ttgtgataga gtctgtggtg gaatgccccc gaaattgcca tggaaatgga gagtgtgttt
     1141 ctggaacttg ccattgtttt ccaggctttc taggtccgga ttgttcaaga gcagcctgtc
     1201 cagtgctgtg tagtggcaac ggccagtact ccaagggccg ctgcctctgt ttcagtggct
     1261 ggaagggcac cgagtgtgat gtaccaaata cgcagtgtat cgacccgcag tgcgggggtc
     1321 gtgggatttg tatcgtgggc tcttgtgttt gcaactctgg atacaaagga gagaactgtg
     1381 aagaagctga ttgtctagac cctggatgtt ctaatcatgg tgtgtgtatc catggggaat
     1441 gtcactgcaa tccaggatgg ggtggtaaca attgtgaaat actcaagacc atgtgtccag
     1501 accagtgctc tggtcatgga acatatcttc aagaaagtgg ctcctgcact tgtgacccta
     1561 attggactgg cccagactgc tcaaatgaga tctgttccgc ggactgcggc ttgcacggcg
     1621 tctgcatggg gggcgcttgc cgctgtgaag aaggctggac gggcccagcg tgcagtcaga
     1681 gagcctgcca cccgcgctgc gccgagcacg gcacctgcag ggacggcaag tgtgaatgca
     1741 gccagggctg gaacggcgag cactgcacca tcgaggggtg ccccggtctg tgcaacagca
     1801 atggaagatg cacactggac caaaacggct ggcattgtgt ttgccagcca gggtggaggg
     1861 gagcagggtg tgacgtggcc atggagaccc tctgcacaga tagcaaggac aatgagggag
     1921 atggactcat tgactgcatg gatcctgact gctgtttaca gagttcctgc caaaatcagc
     1981 cctactgtcg tggattacct gatccccagg atatcattag ccaaagctta caatcaccat
     2041 ctcagcaagc tgccaaaccc ttctatgacc gaatcagttt tctcatagga tctgatagca
     2101 cccatgtcat acccggagac agtcctttca ataagagcct tgcatccgtc atcagaggcc
     2161 aagtactaac tgctgatgga acgccactta ttggagtgaa cgtctcattt ttccattacc
     2221 cagaatatgg atatactatt acccgccagg atggaatgtt tgacttggtg gcgaatggcg
     2281 gggcttctct aactttggta tttgaacgat ccccgttcct cactcagtat catactgtgt
     2341 ggattccatg gaatgtcttt tatgtgatgg ataccctcgt catgaagaaa gaggagaatg
     2401 acattcccag ctgtgatcta agtggcttcg tgaggccgaa tcctatcatt gtgtcatcac
     2461 ctttatccac cttttttaga tcttctcctg aagacagtcc cattattccc gagacacagg
     2521 tactccatga agaaaccaca attccaggaa cagacttgaa actctcctac ctgagttcca
     2581 gagctgccgg atataagtca gtacttaaga tcaccatgac ccagtccgtt atcccattta
     2641 atttaatgaa ggttcatctg atggtagctg tagtaggaag actctttcaa aagtggtttc
     2701 ctgcctcacc gaacttggcc tatactttta tatgggataa aacagatgct tataatcaaa
     2761 aggtctatgg tctatctgaa gctgttgtgt cggttggata tgaatatgag tcgtgtttgg
     2821 acctgacttt gtgggagaaa aggactgcca tattgcaagg ctacgaatta gatgcttcca
     2881 acatgggcgg ttggacatta aacaaacatc acgtattgga cgttcagaat ggtatactgt
     2941 acaagggaaa cggagaaaac cagtttatct cccaacagcc tcctgtcgtc agcagcatca
     3001 tgggcaacgg ccggaggcgc agcatctcgt gcccgagctg caatggtcca gctgacggga
     3061 ataaactctt ggccccagtg gcgttagcct gtgggatcga cggcagcctg tacgtggggg
     3121 acttcaacta cgtgcggcgg atgttccctt ccgggaacgt gacgagcgtc ttagaactga
     3181 gcagcccagc tcatagatac taccttgcaa ctgatccagt ctcaggggat ttgtatgttt
     3241 ctgacactaa cactcgcagg atttatcgcc cgaagtcact cacgggtgca aaagacttga
     3301 ctaaaaatgg tgaagtggtt gcagggacag gagaacagtg ccttcctttt gatgaagcca
     3361 gatgtgggga tggagggaag gctgtggaag ccacactcat gagtcccaaa ggaatggcga
     3421 tcgacaaaaa tggattaatc tactttgtcg atggaaccat gatcagaaaa gttgatcaga
     3481 atggaatcat atcaactctc ctaggctcta acgacctgac ttcagccaga cctttaactt
     3541 gtgacacaag catgcacatc agccaggtac gtctggaatg gcccactgac ctagccatta
     3601 accctatgga taactccatt tatgtcctgg ataataatgt agttttacag atcactgaaa
     3661 atcgtcaagt gcgcgttgct gctgggcggc ccatgcattg ccaggtgcca ggagtggaat
     3721 attctctggg caagcacgca gttcagacga ccctggagtc ggctactgcc attgctgtgt
     3781 cctacagtgg ggtcctgtac atcactgaaa ccgacgaaaa gaaaattaac cggataaggc
     3841 aagtcaccac agacggggag atctccctgg ttgctgggat accgtcagag tgtgactgca
     3901 aaaacgatgc caattgtgac tgctaccaga gcggagatgg ctatgccaaa gatgccaaac
     3961 tgagcgctcc gtcctccctt gccgcctctc cggatggtac cctgtacatt gcagacctag
     4021 gaaacattcg gatccgggct gtgtcaaaga acaagccttt acttaactct atgaacttct
     4081 atgaagttgc ctctccaacc gatcaagaac tctatatctt tgacgtcaat ggcactcacc
     4141 agtttactgt gagtttagtc actggcgatt atctgtacaa ttttagctac agcaatgaca
     4201 atgatattac tgctgtgacc gacagtaacg gcaataccct taggattaga cgggacccaa
     4261 atcggatgcc agtgcgagtg gtgtctcctg ataaccaagt gatatggttg accataggaa
     4321 caaatggatg tttgaaaagc atgaccgctc aaggactgga attagttttg tttacttacc
     4381 atggcaacag cggcctttta gccactaaaa gcgatgaaac tggatggaca acattttttg
     4441 actatgacag tgaaggtcgt ctgacaaatg tgacatttcc aaccggagtg gtcacaaacc
     4501 tccatgggga catggacaag gctatcacag tggacctgga gtcatccagc agagaagaag
     4561 gtgtcagcat cacttcaaac ctgtcctcca tcgactcatt ctacaccgtg gctcaagatc
     4621 agttaagaaa cagctaccag gttggttacg acggctccct tcgaatcctg tacgccagtg
     4681 gcctggattc gcactatcag acagagccac acgttctggc cggcacagct aacccaacag
     4741 ttgccaaaag gaacatgact cttcctggtg aaaacggtca gaatttggtg gaatggagat
     4801 tccgaaaaga gcaagcccaa ggcaaagtca acgtctttgg tcgaaagctc agggttaatg
     4861 gcagaaacct cctttcagtt gactttgatc gaacaacgaa gacagaaaag atctatgatg
     4921 accaccgtaa atttctcctg aggatcgcct atgacacatc agggcatccg actctctggc
     4981 tgccgagcag caagctgatg gccgtcaatg tcacctattc atccacgggt caagtggcca
     5041 gcgtccagcg aggaactacg agtgagaaag tagattacga cggacagggg agaatcgttt
     5101 cccgggtttt tgctgacggg aagacatgga gttacacgta cttggaaaag tccatggtgc
     5161 ttctgctgca tagccagcgg cagtacatct ttgagtacga cacgtgggac cagctgtcgg
     5221 ccatcaccat gcccagcgtg gctcgccaca caatgcagac catccgctcc atcggctatt
     5281 accgtaacat atacaacccc ccggagagca atgcctccgt catcacggac tacaacgagg
     5341 gcgggctgct tctccagacg gccttcctgg gtacgagtcg gagggtccta ttcaagtaca
     5401 ggaggcagac caggctctca gaaatcttat acgatagcac gagagtcagt tttacctacg
     5461 atgaaacggc aggagtcctc aaaacggtaa acctccagag tgatggtttt atttgcacca
     5521 tcagatacag gcaaattgga cctctcattg acagacagat cttccgcttt agtgaagatg
     5581 ggatggtgaa cgcgagattc gactacagct atgacaacag ctttcgggtg accagcatgc
     5641 agggtgtcat caatgaaact ccgctgccca ttgacctcta tcagttcgat gacatttctg
     5701 gaaaagtgga gcagtttgga aaatttggag ttatatatta tgatattaac cagatcattt
     5761 ccacagctgt aatgacttac acgaagcact ttgacgctca cggccgcatc aaggaaattc
     5821 aatatgagat cttcaggtca ctcatgtact ggattacaat tcagtatgat aacatgggtc
     5881 gggtaaccaa gagagagatt aaaatagggc ccttcgccaa cactaccaaa tatgcttatg
     5941 agtacgatgt cgacggacag ctgcagacag tttatctgaa tgaaaaaatt acgtggcgtt
     6001 acaactacga cctgaatgga aacctccacc tactgaaccc aagtaacagc gcgcgcttga
     6061 cgcctcttcg ctatgacctg cgagacagga tcacccgact gggcgatgtt cagtaccggt
     6121 tggatgaaga tggcttcctg cgtcaaagag gcacagagat ctttgagtac agctccaagg
     6181 ggcttctgac ccgagtgtac agtaaaggca gcggctggac agtgatctat cgttacgacg
     6241 gcctgggaag gcgtgtgtct agcaagacca gtctgggaca gcacctgcag tttttttacg
     6301 cagacctcac ttatcccacc aggattactc acgtctacaa ccattcgagt tcagagatca
     6361 cctccctcta ttatgatctc caaggacatc tttttgccat ggaaatcagc agcggggatg
     6421 aattctacat cgcatcagac aacacaggga caccactggc tgtcttcagc agcaacgggc
     6481 ttatgctcaa acagattcag tacaccgcat acggcgaaat ctattttgac tccaacattg
     6541 actttcagct ggtgattgga tttcatggtg gcttgtatga cccgctcaca aaattaatcc
     6601 actttggaga aagggattat gacattttgg caggacgatg gacaacgcct gacatagaaa
     6661 tctggaaaag gattgggaag gacccagctc cctttaacct gtacatgttt aggaataaca
     6721 accctgcaag caaaatccat gatgtgaaag actacatcac agatgttaac agctggctgg
     6781 tgacatttgg cttccatctg cacaatgcca ttcctgggtt ccctgtcccc aaattcgatc
     6841 taacggagcc ttcttacgaa ctggtgaaga gtcagcagtg ggatgatgta ccgcccacgt
     6901 ttggagtcca gcagcaggtg gcgaggcagg ccaaggcctt cctgtccctg ggcaggatgg
     6961 ccgaggtgcg gggcagcgcg cgccagggca gcggcgcgcc gtcgtggctg tggttcgcga
     7021 cggttaagtc gctgatcggc aagggcgtca tgctggccgt gagccggggc cgcgtgcaga
     7081 ccaacgcgct caacatcgcc gacgaggact gcatcaaggt ggcggccgtg ctcaacagcg
     7141 ccctctacct ggaggacctg cacttcaccg tcgagggcag ggacacgcac cacttcatca
     7201 agaccagcac gcccgagggc gacctgggca cgctgcgcct gacgagcggc cgccgggcgc
     7261 tggagaacgg catcaacgtg accgtgtcgc agtccaccgc cgtggtcaac ggcaggaccc
     7321 gcaggttcgc ggacgtggag ctgcagttcg gcgcgctggc gctgcatgtg cgctacggcg
     7381 cgaccctgga cgaggagagg gcgcgcgtgc tggagcaggc gcggcagcgc gcgctcgccc
     7441 gggcctgggc gcgcgagcag cagcgcgtgc gcgacggcga ggagggcgcg cgcctctgga
     7501 cggagggcga gaagcggcag ctgctgagcg ccggcagggt gcagggctac gacggctact
     7561 acgtgctctc ggtggagcag taccccgagc tggcagacag cgcggacaac atccagttcc
     7621 tccgccagag cgagatcggc cgcaggtaac gcccgcgccg gcggcgggga agcgcgcgcg
     7681 cgcgggcgcg cgggggccga gccggcgggg ccgcctgcct ctccagcccc aggcgcagcg
     7741 ccacctctgc gcagatgtgt ctggggcgcg agccgagggg gctccccggc accgaggaga
     7801 gccagactgc tcttaaaaaa aaaaaaaacc acccccccca aatcaaagca gacagacaaa
     7861 aacaaaaacc tttcttctga atgaccttaa aggtgatcgg ctttaaagaa tatgtttaca
     7921 tatgcatatc gctgcactca gttggacgga aagtattgcg aggaaaacat cattaaagga
     7981 aaaaaaaaaa aagcccaacc attttgcccc gggccgtctg ttcttcgagg cactgtgttt
     8041 aaagaaggta gagatgcaca cagtgtttcc agatgttacc cagctgtcga cttttgctta
     8101 caagaagtag tctctctgca tagggtgtga tgtatatccc tgttaatgtt agaatgtgag
     8161 gcagagttac tgttcctgga cgacccgact gcttccccag tgctgctttg taaaaggaca
     8221 ttggcacaag tgacttctgc cggggcgggg atttctaagg gattttacga ggccaacgtg
     8281 gtgtgcctcg cggggaagaa caccagccca cacagaatcc ttgtcactga tgatgagcaa
     8341 aggaagccct gatttttttg taaattatgt gagacaagtt gtttatggat ttttatatga
     8401 attacaattt actgtacatc aaatattagt ctcagaggag ttaatttatg taaagtgttt
     8461 aaaaagttta tacttaaaaa taaaacgata aaaacatg
//
LOCUS       XR_004347870             339 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746780
            (LOC116746780), ncRNA.
ACCESSION   XR_004347870
VERSION     XR_004347870.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..339
                     /gene="LOC116746780"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746780"
     ncRNA           1..339
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746780"
                     /product="uncharacterized LOC116746780"
                     /db_xref="GeneID:116746780"
ORIGIN      
        1 tttcctctac tttctgctct tggaggcaac actggagcct cggtcactgt gtttcttgta
       61 attttgggca agtcacttca ctttgtccag cagtaaaatg atgagattgg actagaggaa
      121 atcacagatc tcaaccagct ttgacaaatc tccagtccaa ggaccagatg tgccaacctt
      181 tcagccacac ttcttaatgc gatacctatg aagaatctag gagcatcttc cattgccagg
      241 gtctgaaatc agaagacctg gctgacaccg acctttgagt tgatcctgct tgacatttta
      301 aaccaattgg cccggaattt cctgatccac actactgag
//
LOCUS       XM_032618482            6230 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus storkhead box 2 (STOX2), transcript
            variant X1, mRNA.
ACCESSION   XM_032618482
VERSION     XM_032618482.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6230
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6230
                     /gene="STOX2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746782"
     CDS             842..3820
                     /gene="STOX2"
                     /codon_start=1
                     /product="storkhead-box protein 2 isoform X1"
                     /protein_id="XP_032474373.1"
                     /db_xref="GeneID:116746782"
                     /translation="MPPKMEKFLQIAPHSLAIVLGPAEGPAGERSEAARPASPAQPRQ
                     LARHHIGYEIFADFKAENMQHFWNKKVTAAVAETFFLGWIDEQVLLIQGKEEHLEALR
                     EGWSRRALRPPSGFHIRCLGDVSPISMSPISQSQFIPLGEILCLAISAMNSARKPVTQ
                     EALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVTPQTYFITPSLIR
                     TNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHGVH
                     TATLQRKTAKDCKDPYYPPSLCQVPPTEKSKNTVNFSYKTETLSKPKDSEKQSKKFGL
                     KLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMELIRRINPDLTVEN
                     VMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPS
                     DGSRLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNFVMHSNANVIESHFPMTPEWDV
                     SGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKGP
                     LGASSLGMPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTVSHQRAHISSTSYKEVCIPE
                     IVSGSKEPPSACSLLEPGKLPESLPSFGELNSCPTKTAADDYFQCNTSSETVLTAPSP
                     LGKNKEDHDTLTLAEGVKKLPLSDRQAPHPSREPVGHKEESPKGPGGGPVASGAVAEG
                     IANGRLIQHHGAEPSGLDKRKEIFSKDTLFKPLHSTLSVNSYHKSSLSVLRSHPKTPA
                     DTLPGRCEKLEPSLGTSAAQAMPASQRQQESVGNQEASFDYYNVSDDDESEEGANKNT
                     EEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAPKETDSSSNQRATHSARLDSMD
                     SSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPTWSPAHGGAGPAFNFRTSTDSPT
                     NEAEKLQKPSSCLQASVTSV"
     misc_feature    1226..1462
                     /gene="STOX2"
                     /note="Winged helix Storkhead-box1 domain; Region:
                     Stork_head; pfam10264"
                     /db_xref="CDD:431182"
ORIGIN      
        1 ccgaaggctg agaaaccctc ctctagggaa atgtagcatg aagccttggc gttaattaat
       61 tagggctcta aatatacaac taaactttct caatgaaaaa caagccaaac agagtttgta
      121 cacaaagaag cttaacgaag tgggggtttt tggtttgttt cttgttttct ttttttaaaa
      181 agcataatca ttacctttcc tggtaaattt ccgtatcctc ttcctaaacg gagggttggg
      241 taggtaacgc tgggaatgac taggtttctt ctatctcagg cccacagtac gtgatggaga
      301 tacgggagga gagttccacg agagcgtggg aggagggacg gatgacaatt tttcgtggtt
      361 gactacgttt ttaaaaaagc cacttccaag ggcacatcaa ccagtcagcg aagccacttg
      421 ttccagcagg aggtgggagg tgagggcgga gtggagcgtg gggaggagcg acactcaccg
      481 ctccggactc ggtgccttcc atgtgtcgcc gtgcgtccct ggccccgcaa cctaaactca
      541 caccccgccc ccgccccggc tatccgcacc ccgtcgacca cctcccgcag cggactttgg
      601 gggattcctc cggccgagtc cagccaggag ggttccccgg actcggcgcg aactgcccgc
      661 cccctccggc gtctccgccc cccgccgggg ccgccgggcg ccgagggagg ccagggtgcc
      721 gaggctggaa aatgagcggt gcagggaggg tggcctggag ctgcagcgca cttcgcgctg
      781 ctgttcccgg gagcggcggg aggcggcggc tgcggtgagc ggggtcgcgc gcggacgccg
      841 gatgcctccg aagatggaga agtttctgca aattgctcct cactctctgg ccatcgtcct
      901 gggccccgcc gaggggccgg cgggggagag gtccgaggcc gcccggcccg cgtccccggc
      961 ccagccccgg cagctcgccc ggcaccacat cggctacgag atcttcgccg acttcaaagc
     1021 cgagaacatg cagcacttct ggaacaagaa ggtcacggcc gcggtggccg agacgttctt
     1081 cctgggctgg atcgacgagc aggtcctgct aatccagggc aaggaggagc atctggaggc
     1141 gctgcgcgag ggctggtcgc gccgggcgct gcggccgccc tcgggcttcc acatccgctg
     1201 cctgggtgat gtgtcaccaa tcagtatgtc tcccatcagt caatctcagt ttatcccact
     1261 cggggaaatc ctttgcttgg ccatctccgc aatgaactcg gcaagaaaac ctgtcaccca
     1321 agaagcactg atggagcacc tgaccacctg tttcccaggt gttcccaccc caagccaaga
     1381 aattctccgg catacgctga acacgctggt ccgggagcgg aagatctacc cgactccaga
     1441 tggctacttc atcgtaaccc cacagactta tttcataact ccttccctca taagaactaa
     1501 cagtaaatgg taccatttgg atgagaggat acctgacagg tctcagtgta cctctcccca
     1561 gcccgggacc attacgccct ctgcctcagg ctgcgtcagg gaaagaacgt tgcccaggaa
     1621 ccactgcgac tcttgccact gctgtaggga agatgtgcac ggcgtgcaca cggccaccct
     1681 gcagaggaag accgccaagg actgcaaaga cccgtactac cctccttccc tctgccaggt
     1741 gccacccact gaaaagagca aaaatactgt caacttttcg tataagacgg aaactctctc
     1801 caaacctaaa gacagtgaaa agcagtccaa aaaattcgga ctcaagttat tccggctcag
     1861 ttttaaaaaa gacaagacca aacagctagc caatttttcc gcccagtttc ctcccgaaga
     1921 gtggcccctg cgagacgagg acacgccaac tactatccct cgggaggtgg aaatggagct
     1981 cattaggcgc attaacccgg acttgaccgt ggaaaatgtc atgcggcaca ctgcactaat
     2041 gaagaaactt gaagaagaga aagcacacag gagtaaagcc gggtcctccg cccatcacag
     2101 cggaagaagt aaaaagagtc ggacgcatcg caagtcccac ggaaagtctc ggtcgcacag
     2161 caagacgcga gtgtccaaag gagacccgtc agatggctcc cgtctggaca tcccgggtga
     2221 aagagagtac gacttttgcg atcctcttac cagggctccc cgggaaggct gcttcatcat
     2281 cgaacacaaa ggtgataact tcgtcatgca tagcaacgcg aacgtgattg agtctcattt
     2341 ccccatgact ccagaatggg acgtgtctgg ggaactggcc aaaaggagaa ctgagatgcc
     2401 ttttcctgag ccttcccggg gaagctccca ctcaaaagtg caccgaagcc acagccatac
     2461 ccaggaccga aggtccagga atgagagatc caacaaggcc aaggagaggt ccagatccat
     2521 ggataactcc aaaggtcctc tgggtgcttc ttctctgggg atgcctgaag acctggctga
     2581 aggctgtagc caagacgacc agacccccag ccaatcctac attgacgaca gtactttaag
     2641 gcctgcacag actgtcagtc atcaaagggc tcacatttcg tccacaagct acaaagaggt
     2701 gtgtattcca gaaatagtca gtggcagcaa ggaacctccc agtgcttgca gcctcttgga
     2761 gccaggcaaa ctgcccgaga gtttgccatc ctttggtgaa ctcaactcct gtccaacaaa
     2821 aacagctgcg gatgactatt tccagtgtaa cacctccagc gagacggtgc tcacggcgcc
     2881 gtcacctctg ggaaagaaca aagaggacca tgacactctg accctggcgg aaggggtgaa
     2941 aaagctgcct ctgtcggaca ggcaggcccc gcatccctcc agggagcctg tagggcacaa
     3001 ggaggagtcg ccaaaggggc cgggcggggg cccagtggct tcgggcgctg tggccgaggg
     3061 gattgccaat ggacgcctca tccagcatca cggtgctgaa cccagcggcc tggacaagag
     3121 gaaagagata ttcagcaaag acacactgtt caagcctctt cacagcacct tgtctgtaaa
     3181 cagctatcac aaatcaagcc tgtccgtcct cagatctcac ccgaagacac ccgcagacac
     3241 actgccaggc cgatgtgaga agctggagcc gtccctaggg acctcggctg cacaagccat
     3301 gccagcttcc cagcgtcagc aggagtcagt ggggaaccag gaggcctctt ttgactatta
     3361 caacgtctct gatgatgatg agtccgagga aggggcaaac aagaacacag aggaggagaa
     3421 aaacagagac gatgtgggaa ccatgcagtg gctcctggaa agggagaagg aaagagactt
     3481 acagaggaaa tttgagaaga acctcaccct ccttgcccca aaggaaaccg acagcagcag
     3541 caaccagagg gccacccatt cggcgcgtct ggacagcatg gacagcagca gtatcacggt
     3601 ggacagtgga ttcaactccc cacgcactcg ggagagcctg gcttccaaca catcaagcat
     3661 tgttgaaagt aaccgtcgtc agaaccctac ctggagcccg gcccacggtg gagctggccc
     3721 ggccttcaat ttccgaacaa gtacggacag ccccacaaat gaagctgaga aattacagaa
     3781 accttccagc tgcttgcaag cttctgttac tagcgtgtga tagtcattct gcctcacatc
     3841 tcctgtctca ttcgatacag ccaagtttac ggcactggga ctgttgttta catcttcggg
     3901 aagacaagca tctcaacggc agtttttgtg ttgacttaaa ctgtgctgct aagtaggcta
     3961 gggcaaaaaa caacaacaac aaaatcgtta tttcagagta ttgcttttca catttatggc
     4021 tctgtagcaa caagaatagc agtaggggtg atatgtatac ttttgcttca ctaattgtaa
     4081 ctgagcacac ataggaaagt ctagacactg tcagtgtaat atgcgttttc gatgtcatgc
     4141 agttgccaag tccattctaa aatgccacag atgtgtgttg ctcccagtct gtgaccgagt
     4201 ggtgccacag aacactgatc cttgacactt ccaaaaacaa aaaacaaaac aaaacaaaaa
     4261 ctaagcctcc acaaaatgtc aactgcaagg gtctaccttt agggaaatca atgccaaact
     4321 gactaaaggg gaccccagcc cagtgtgtgt gaatcgttta ggccccagtc attttgcact
     4381 gtgagttttc gtgacaagat gttgcgggag cccacggaag tgtgtcagaa ggggtcgtga
     4441 tccaaatact gggagtgttt gttttcagga ttttaaatgt gtcacggatg cttgtctgat
     4501 ttttttaacc ttccataatc acaaacagga atataggcct ttgaatctga aatggacaaa
     4561 ggaagggtct cccagcctgg ctggggcaca gcactaagtg atgggagagg taatggggac
     4621 ctgtagaggt gttcatcaga tactgaagga agatcatttc ctccttgtga tacttgacgg
     4681 tgatactatc ttactataat agatatgata atttgtttaa aatcaaaatg ttctttgtga
     4741 tacaaacgaa gactacggcc tggggacgtt attctttcta atggaaggac ataaatctat
     4801 tttatgtagt tttaaataga atgcctaaat taggctgtgg gagataattt ttagtggtta
     4861 taggaaagag caaatttagg gggagttgaa cttcaggcct tttattcctg ggaagatatc
     4921 tatagagaaa actttaaaat actttttgat tagaaatata catgtgccca tgtaattaac
     4981 aacagaatgt gatcattctg caagtgtggt gtcatcctaa cttgtacgcc cctaaaactt
     5041 attggaataa caattatgca tacatgaact atgccagagt aatgtttaca gatacttcgt
     5101 aaccagtttc aggaggcatt tttaggtaga tgtatagttt ttagcccaac ttatttcaga
     5161 atggtttgtt aacattttgc tttggtttac aatatgtcat gttgaataca aagaaggttc
     5221 tcagcagcaa agggattaca aataatcaag attcagcctt ctaagaaaga ggcacctcca
     5281 agttcccatg tcttatttta tgagaaccat ggaataaatc tatagataac ggaaaattat
     5341 tcacaaaagg gttacatgtg acacaagtaa atggtctgac aaaaagtttt atttagttaa
     5401 gtggcatgtg atgtttggag ccatataccg taaaatatat atccaaaact tttcacctca
     5461 gatttcagca attggcatag gatctgtgaa acacttctgc ttcggtatta ggttgaatca
     5521 ctaggcatct gtttaaagag tggagtcata tacacagttg aactgtttct tgaaacattt
     5581 gggtccttcc tcatgctttt tcaggtatct ggaagttgca ttgggtcaaa ctggactcat
     5641 caagtttagt acagattcct ttttttgtgc ttatagtgaa acgtgagcac gtttcttggc
     5701 aaactcccgc acctttaaga tgcttaagtc agttggcttt cagtcccatg ccttatttcc
     5761 tccaaggcat gccttgattt ctcagaaatg cactcttctc tcactgctca aatttgtctg
     5821 ggaggaatga taacgtatcg aatagactat atacagagtc tgtttccttg gggagttgta
     5881 tgccacacaa ttactaaatt cttctaaatt cttttttttc cccaaaaccc tgccctccag
     5941 cgtctgtcac accatcagtt cataaataat agaaccattg aaacaataca tcagcctcta
     6001 gttgatcctc ctaaggtagc cattatacta atcaaatact gtgtgaacag gaaaggaaag
     6061 cattaccttt aagagaagct ttaaaatatg aatttatcaa catttcacaa gaaataggtt
     6121 tacagaagac attggaataa aatgtgtacc acgctttgcc tgatgctatg aggtacatga
     6181 ttaaaaaaaa aaaaaaaaaa aactccctta gaccagcagc cattagcata
//
LOCUS       XM_032618483            6469 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus storkhead box 2 (STOX2), transcript
            variant X2, mRNA.
ACCESSION   XM_032618483
VERSION     XM_032618483.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6469
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6469
                     /gene="STOX2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746782"
     CDS             1032..3821
                     /gene="STOX2"
                     /codon_start=1
                     /product="storkhead-box protein 2 isoform X2"
                     /protein_id="XP_032474374.1"
                     /db_xref="GeneID:116746782"
                     /translation="MPPKMEKFLQIAPHSLAIVLGPAEGPAGERSEAARPASPAQPRQ
                     LARHHIGYEIFADFKAENMQHFWNKKVTAAVAETFFLGWIDEQVLLIQGKEEHLEALR
                     EGWSRRALRPPSGFHIRCLGDVSPISMSPISQSQFIPLGEILCLAISAMNSARKPVTQ
                     EALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVTPQTYFITPSLIR
                     TNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHGVH
                     TATLQRKTAKDCKDPYYPPSLCQVPPTEKSKNTVNFSYKTETLSKPKDSEKQSKKFGL
                     KLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMELIRRINPDLTVEN
                     VMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPS
                     DGSRLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNFVMHSNANVIESHFPMTPEWDV
                     SGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKGP
                     LGASSLGMPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTVSHQRAHISSTSYKEVCIPE
                     IVSGSKEPPSACSLLEPGKLPESLPSFGELNSCPTKTAADDYFQCNTSSETVLTAPSP
                     LGKNKEDHDTLTLAEGVKKLPLSDRQAPHPSREPVGHKEESPKGPGGGPVASGAVAEG
                     IANGRLIQHHGAEPSGLDKRKEIFSKDTLFKPLHSTLSVNSYHKSSLSVLRSHPKTPA
                     DTLPGRCEKLEPSLGTSAAQAMPASQRQQESVGNQEASFDYYNVSDDDESEEGANKNT
                     EEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAPKETDSSSNQRATHSARLDSMD
                     SSSITVDSGFNSPRN"
     misc_feature    1416..1652
                     /gene="STOX2"
                     /note="Winged helix Storkhead-box1 domain; Region:
                     Stork_head; pfam10264"
                     /db_xref="CDD:431182"
ORIGIN      
        1 ccgaaggctg agaaaccctc ctctagggaa atgtagcatg aagccttggc gttaattaat
       61 tagggctcta aatatacaac taaactttct caatgaaaaa caagccaaac agagtttgta
      121 cacaaagaag cttaacgaag tgggggtttt tggtttgttt cttgttttct ttttttaaaa
      181 agcataatca ttacctttcc tggtaaattt ccgtatcctc ttcctaaacg gagggttggg
      241 taggtaacgc tgggaatgac taggtttctt ctatctcagg cccacagtac gtgatggaga
      301 tacgggagga gagttccacg agagcgtggg aggagggacg gatgacaatt tttcgtggtt
      361 gactacgttt ttaaaaaagc cacttccaag ggcacatcaa ccagtcagcg aagccacttg
      421 ttccagcagg aggtgggagg tgagggcgga gtggagcgtg gggaggagcg acactcaccg
      481 ctccggactc ggtgccttcc atgtgtcgcc gtgcgtccct ggccccgcaa cctaaactca
      541 caccccgccc ccgccccggc tatccgcacc ccgtcgacca cctcccgcag cggactttgg
      601 gggattcctc cggccgagtc cagccaggag ggttccccgg actcggcgcg aactgcccgc
      661 cccctccggc gtctccgccc cccgccgggg ccgccgggcg ccgagggagg ccagggtgcc
      721 gaggctggaa aatgagcggt gcagggaggg tggcctggag ctgcaggtaa tgcgcgccag
      781 ccgtctgccc gagcgggctc cgcaccccct cctctccccc gcgtggtgac ctgctgcgcc
      841 cgcctgcagg ctgcgcgcag aggctgcgcg ggggcgtccc cggcatctgg gcgcgggatg
      901 tgtggggaag cggccggccc gggggtgggc actaacgctc ttcgtttgtc gcgcagcgca
      961 cttcgcgctg ctgttcccgg gagcggcggg aggcggcggc tgcggtgagc ggggtcgcgc
     1021 gcggacgccg gatgcctccg aagatggaga agtttctgca aattgctcct cactctctgg
     1081 ccatcgtcct gggccccgcc gaggggccgg cgggggagag gtccgaggcc gcccggcccg
     1141 cgtccccggc ccagccccgg cagctcgccc ggcaccacat cggctacgag atcttcgccg
     1201 acttcaaagc cgagaacatg cagcacttct ggaacaagaa ggtcacggcc gcggtggccg
     1261 agacgttctt cctgggctgg atcgacgagc aggtcctgct aatccagggc aaggaggagc
     1321 atctggaggc gctgcgcgag ggctggtcgc gccgggcgct gcggccgccc tcgggcttcc
     1381 acatccgctg cctgggtgat gtgtcaccaa tcagtatgtc tcccatcagt caatctcagt
     1441 ttatcccact cggggaaatc ctttgcttgg ccatctccgc aatgaactcg gcaagaaaac
     1501 ctgtcaccca agaagcactg atggagcacc tgaccacctg tttcccaggt gttcccaccc
     1561 caagccaaga aattctccgg catacgctga acacgctggt ccgggagcgg aagatctacc
     1621 cgactccaga tggctacttc atcgtaaccc cacagactta tttcataact ccttccctca
     1681 taagaactaa cagtaaatgg taccatttgg atgagaggat acctgacagg tctcagtgta
     1741 cctctcccca gcccgggacc attacgccct ctgcctcagg ctgcgtcagg gaaagaacgt
     1801 tgcccaggaa ccactgcgac tcttgccact gctgtaggga agatgtgcac ggcgtgcaca
     1861 cggccaccct gcagaggaag accgccaagg actgcaaaga cccgtactac cctccttccc
     1921 tctgccaggt gccacccact gaaaagagca aaaatactgt caacttttcg tataagacgg
     1981 aaactctctc caaacctaaa gacagtgaaa agcagtccaa aaaattcgga ctcaagttat
     2041 tccggctcag ttttaaaaaa gacaagacca aacagctagc caatttttcc gcccagtttc
     2101 ctcccgaaga gtggcccctg cgagacgagg acacgccaac tactatccct cgggaggtgg
     2161 aaatggagct cattaggcgc attaacccgg acttgaccgt ggaaaatgtc atgcggcaca
     2221 ctgcactaat gaagaaactt gaagaagaga aagcacacag gagtaaagcc gggtcctccg
     2281 cccatcacag cggaagaagt aaaaagagtc ggacgcatcg caagtcccac ggaaagtctc
     2341 ggtcgcacag caagacgcga gtgtccaaag gagacccgtc agatggctcc cgtctggaca
     2401 tcccgggtga aagagagtac gacttttgcg atcctcttac cagggctccc cgggaaggct
     2461 gcttcatcat cgaacacaaa ggtgataact tcgtcatgca tagcaacgcg aacgtgattg
     2521 agtctcattt ccccatgact ccagaatggg acgtgtctgg ggaactggcc aaaaggagaa
     2581 ctgagatgcc ttttcctgag ccttcccggg gaagctccca ctcaaaagtg caccgaagcc
     2641 acagccatac ccaggaccga aggtccagga atgagagatc caacaaggcc aaggagaggt
     2701 ccagatccat ggataactcc aaaggtcctc tgggtgcttc ttctctgggg atgcctgaag
     2761 acctggctga aggctgtagc caagacgacc agacccccag ccaatcctac attgacgaca
     2821 gtactttaag gcctgcacag actgtcagtc atcaaagggc tcacatttcg tccacaagct
     2881 acaaagaggt gtgtattcca gaaatagtca gtggcagcaa ggaacctccc agtgcttgca
     2941 gcctcttgga gccaggcaaa ctgcccgaga gtttgccatc ctttggtgaa ctcaactcct
     3001 gtccaacaaa aacagctgcg gatgactatt tccagtgtaa cacctccagc gagacggtgc
     3061 tcacggcgcc gtcacctctg ggaaagaaca aagaggacca tgacactctg accctggcgg
     3121 aaggggtgaa aaagctgcct ctgtcggaca ggcaggcccc gcatccctcc agggagcctg
     3181 tagggcacaa ggaggagtcg ccaaaggggc cgggcggggg cccagtggct tcgggcgctg
     3241 tggccgaggg gattgccaat ggacgcctca tccagcatca cggtgctgaa cccagcggcc
     3301 tggacaagag gaaagagata ttcagcaaag acacactgtt caagcctctt cacagcacct
     3361 tgtctgtaaa cagctatcac aaatcaagcc tgtccgtcct cagatctcac ccgaagacac
     3421 ccgcagacac actgccaggc cgatgtgaga agctggagcc gtccctaggg acctcggctg
     3481 cacaagccat gccagcttcc cagcgtcagc aggagtcagt ggggaaccag gaggcctctt
     3541 ttgactatta caacgtctct gatgatgatg agtccgagga aggggcaaac aagaacacag
     3601 aggaggagaa aaacagagac gatgtgggaa ccatgcagtg gctcctggaa agggagaagg
     3661 aaagagactt acagaggaaa tttgagaaga acctcaccct ccttgcccca aaggaaaccg
     3721 acagcagcag caaccagagg gccacccatt cggcgcgtct ggacagcatg gacagcagca
     3781 gtatcacggt ggacagtgga ttcaactccc cacggaattg aaacaaatgt ttctgcagct
     3841 gtagagatca ccaatctgga ctgcactcgg gagagcctgg cttccaacac atcaagcatt
     3901 gttgaaagta accgtcgtca gaaccctacc tggagcccgg cccacggtgg agctggcccg
     3961 gccttcaatt tccgaacaag tacggacagc cccacaaatg aagctgagaa attacagaaa
     4021 ccttccagct gcttgcaagc ttctgttact agcgtgtgat agtcattctg cctcacatct
     4081 cctgtctcat tcgatacagc caagtttacg gcactgggac tgttgtttac atcttcggga
     4141 agacaagcat ctcaacggca gtttttgtgt tgacttaaac tgtgctgcta agtaggctag
     4201 ggcaaaaaac aacaacaaca aaatcgttat ttcagagtat tgcttttcac atttatggct
     4261 ctgtagcaac aagaatagca gtaggggtga tatgtatact tttgcttcac taattgtaac
     4321 tgagcacaca taggaaagtc tagacactgt cagtgtaata tgcgttttcg atgtcatgca
     4381 gttgccaagt ccattctaaa atgccacaga tgtgtgttgc tcccagtctg tgaccgagtg
     4441 gtgccacaga acactgatcc ttgacacttc caaaaacaaa aaacaaaaca aaacaaaaac
     4501 taagcctcca caaaatgtca actgcaaggg tctaccttta gggaaatcaa tgccaaactg
     4561 actaaagggg accccagccc agtgtgtgtg aatcgtttag gccccagtca ttttgcactg
     4621 tgagttttcg tgacaagatg ttgcgggagc ccacggaagt gtgtcagaag gggtcgtgat
     4681 ccaaatactg ggagtgtttg ttttcaggat tttaaatgtg tcacggatgc ttgtctgatt
     4741 tttttaacct tccataatca caaacaggaa tataggcctt tgaatctgaa atggacaaag
     4801 gaagggtctc ccagcctggc tggggcacag cactaagtga tgggagaggt aatggggacc
     4861 tgtagaggtg ttcatcagat actgaaggaa gatcatttcc tccttgtgat acttgacggt
     4921 gatactatct tactataata gatatgataa tttgtttaaa atcaaaatgt tctttgtgat
     4981 acaaacgaag actacggcct ggggacgtta ttctttctaa tggaaggaca taaatctatt
     5041 ttatgtagtt ttaaatagaa tgcctaaatt aggctgtggg agataatttt tagtggttat
     5101 aggaaagagc aaatttaggg ggagttgaac ttcaggcctt ttattcctgg gaagatatct
     5161 atagagaaaa ctttaaaata ctttttgatt agaaatatac atgtgcccat gtaattaaca
     5221 acagaatgtg atcattctgc aagtgtggtg tcatcctaac ttgtacgccc ctaaaactta
     5281 ttggaataac aattatgcat acatgaacta tgccagagta atgtttacag atacttcgta
     5341 accagtttca ggaggcattt ttaggtagat gtatagtttt tagcccaact tatttcagaa
     5401 tggtttgtta acattttgct ttggtttaca atatgtcatg ttgaatacaa agaaggttct
     5461 cagcagcaaa gggattacaa ataatcaaga ttcagccttc taagaaagag gcacctccaa
     5521 gttcccatgt cttattttat gagaaccatg gaataaatct atagataacg gaaaattatt
     5581 cacaaaaggg ttacatgtga cacaagtaaa tggtctgaca aaaagtttta tttagttaag
     5641 tggcatgtga tgtttggagc catataccgt aaaatatata tccaaaactt ttcacctcag
     5701 atttcagcaa ttggcatagg atctgtgaaa cacttctgct tcggtattag gttgaatcac
     5761 taggcatctg tttaaagagt ggagtcatat acacagttga actgtttctt gaaacatttg
     5821 ggtccttcct catgcttttt caggtatctg gaagttgcat tgggtcaaac tggactcatc
     5881 aagtttagta cagattcctt tttttgtgct tatagtgaaa cgtgagcacg tttcttggca
     5941 aactcccgca cctttaagat gcttaagtca gttggctttc agtcccatgc cttatttcct
     6001 ccaaggcatg ccttgatttc tcagaaatgc actcttctct cactgctcaa atttgtctgg
     6061 gaggaatgat aacgtatcga atagactata tacagagtct gtttccttgg ggagttgtat
     6121 gccacacaat tactaaattc ttctaaattc ttttttttcc ccaaaaccct gccctccagc
     6181 gtctgtcaca ccatcagttc ataaataata gaaccattga aacaatacat cagcctctag
     6241 ttgatcctcc taaggtagcc attatactaa tcaaatactg tgtgaacagg aaaggaaagc
     6301 attaccttta agagaagctt taaaatatga atttatcaac atttcacaag aaataggttt
     6361 acagaagaca ttggaataaa atgtgtacca cgctttgcct gatgctatga ggtacatgat
     6421 taaaaaaaaa aaaaaaaaaa actcccttag accagcagcc attagcata
//
LOCUS       XM_032618484            5130 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus storkhead box 2 (STOX2), transcript
            variant X3, mRNA.
ACCESSION   XM_032618484
VERSION     XM_032618484.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5130
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5130
                     /gene="STOX2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746782"
     CDS             27..2720
                     /gene="STOX2"
                     /codon_start=1
                     /product="storkhead-box protein 2 isoform X3"
                     /protein_id="XP_032474375.1"
                     /db_xref="GeneID:116746782"
                     /translation="MSSSCQPTPASPFSQTLKDPLELLLLGDVSPISMSPISQSQFIP
                     LGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYP
                     TPDGYFIVTPQTYFITPSLIRTNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRER
                     TLPRNHCDSCHCCREDVHGVHTATLQRKTAKDCKDPYYPPSLCQVPPTEKSKNTVNFS
                     YKTETLSKPKDSEKQSKKFGLKLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTT
                     IPREVEMELIRRINPDLTVENVMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTH
                     RKSHGKSRSHSKTRVSKGDPSDGSRLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNF
                     VMHSNANVIESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRS
                     RNERSNKAKERSRSMDNSKGPLGASSLGMPEDLAEGCSQDDQTPSQSYIDDSTLRPAQ
                     TVSHQRAHISSTSYKEVCIPEIVSGSKEPPSACSLLEPGKLPESLPSFGELNSCPTKT
                     AADDYFQCNTSSETVLTAPSPLGKNKEDHDTLTLAEGVKKLPLSDRQAPHPSREPVGH
                     KEESPKGPGGGPVASGAVAEGIANGRLIQHHGAEPSGLDKRKEIFSKDTLFKPLHSTL
                     SVNSYHKSSLSVLRSHPKTPADTLPGRCEKLEPSLGTSAAQAMPASQRQQESVGNQEA
                     SFDYYNVSDDDESEEGANKNTEEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAP
                     KETDSSSNQRATHSARLDSMDSSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPTW
                     SPAHGGAGPAFNFRTSTDSPTNEAEKLQKPSSCLQASVTSV"
     misc_feature    126..362
                     /gene="STOX2"
                     /note="Winged helix Storkhead-box1 domain; Region:
                     Stork_head; pfam10264"
                     /db_xref="CDD:431182"
ORIGIN      
        1 cttcgcttag tctggcctgg agacggatgt catcatcctg ccagcctact ccagcctctc
       61 cattctccca aacactcaag gaccctcttg agttacttct ccttggtgat gtgtcaccaa
      121 tcagtatgtc tcccatcagt caatctcagt ttatcccact cggggaaatc ctttgcttgg
      181 ccatctccgc aatgaactcg gcaagaaaac ctgtcaccca agaagcactg atggagcacc
      241 tgaccacctg tttcccaggt gttcccaccc caagccaaga aattctccgg catacgctga
      301 acacgctggt ccgggagcgg aagatctacc cgactccaga tggctacttc atcgtaaccc
      361 cacagactta tttcataact ccttccctca taagaactaa cagtaaatgg taccatttgg
      421 atgagaggat acctgacagg tctcagtgta cctctcccca gcccgggacc attacgccct
      481 ctgcctcagg ctgcgtcagg gaaagaacgt tgcccaggaa ccactgcgac tcttgccact
      541 gctgtaggga agatgtgcac ggcgtgcaca cggccaccct gcagaggaag accgccaagg
      601 actgcaaaga cccgtactac cctccttccc tctgccaggt gccacccact gaaaagagca
      661 aaaatactgt caacttttcg tataagacgg aaactctctc caaacctaaa gacagtgaaa
      721 agcagtccaa aaaattcgga ctcaagttat tccggctcag ttttaaaaaa gacaagacca
      781 aacagctagc caatttttcc gcccagtttc ctcccgaaga gtggcccctg cgagacgagg
      841 acacgccaac tactatccct cgggaggtgg aaatggagct cattaggcgc attaacccgg
      901 acttgaccgt ggaaaatgtc atgcggcaca ctgcactaat gaagaaactt gaagaagaga
      961 aagcacacag gagtaaagcc gggtcctccg cccatcacag cggaagaagt aaaaagagtc
     1021 ggacgcatcg caagtcccac ggaaagtctc ggtcgcacag caagacgcga gtgtccaaag
     1081 gagacccgtc agatggctcc cgtctggaca tcccgggtga aagagagtac gacttttgcg
     1141 atcctcttac cagggctccc cgggaaggct gcttcatcat cgaacacaaa ggtgataact
     1201 tcgtcatgca tagcaacgcg aacgtgattg agtctcattt ccccatgact ccagaatggg
     1261 acgtgtctgg ggaactggcc aaaaggagaa ctgagatgcc ttttcctgag ccttcccggg
     1321 gaagctccca ctcaaaagtg caccgaagcc acagccatac ccaggaccga aggtccagga
     1381 atgagagatc caacaaggcc aaggagaggt ccagatccat ggataactcc aaaggtcctc
     1441 tgggtgcttc ttctctgggg atgcctgaag acctggctga aggctgtagc caagacgacc
     1501 agacccccag ccaatcctac attgacgaca gtactttaag gcctgcacag actgtcagtc
     1561 atcaaagggc tcacatttcg tccacaagct acaaagaggt gtgtattcca gaaatagtca
     1621 gtggcagcaa ggaacctccc agtgcttgca gcctcttgga gccaggcaaa ctgcccgaga
     1681 gtttgccatc ctttggtgaa ctcaactcct gtccaacaaa aacagctgcg gatgactatt
     1741 tccagtgtaa cacctccagc gagacggtgc tcacggcgcc gtcacctctg ggaaagaaca
     1801 aagaggacca tgacactctg accctggcgg aaggggtgaa aaagctgcct ctgtcggaca
     1861 ggcaggcccc gcatccctcc agggagcctg tagggcacaa ggaggagtcg ccaaaggggc
     1921 cgggcggggg cccagtggct tcgggcgctg tggccgaggg gattgccaat ggacgcctca
     1981 tccagcatca cggtgctgaa cccagcggcc tggacaagag gaaagagata ttcagcaaag
     2041 acacactgtt caagcctctt cacagcacct tgtctgtaaa cagctatcac aaatcaagcc
     2101 tgtccgtcct cagatctcac ccgaagacac ccgcagacac actgccaggc cgatgtgaga
     2161 agctggagcc gtccctaggg acctcggctg cacaagccat gccagcttcc cagcgtcagc
     2221 aggagtcagt ggggaaccag gaggcctctt ttgactatta caacgtctct gatgatgatg
     2281 agtccgagga aggggcaaac aagaacacag aggaggagaa aaacagagac gatgtgggaa
     2341 ccatgcagtg gctcctggaa agggagaagg aaagagactt acagaggaaa tttgagaaga
     2401 acctcaccct ccttgcccca aaggaaaccg acagcagcag caaccagagg gccacccatt
     2461 cggcgcgtct ggacagcatg gacagcagca gtatcacggt ggacagtgga ttcaactccc
     2521 cacgcactcg ggagagcctg gcttccaaca catcaagcat tgttgaaagt aaccgtcgtc
     2581 agaaccctac ctggagcccg gcccacggtg gagctggccc ggccttcaat ttccgaacaa
     2641 gtacggacag ccccacaaat gaagctgaga aattacagaa accttccagc tgcttgcaag
     2701 cttctgttac tagcgtgtga tagtcattct gcctcacatc tcctgtctca ttcgatacag
     2761 ccaagtttac ggcactggga ctgttgttta catcttcggg aagacaagca tctcaacggc
     2821 agtttttgtg ttgacttaaa ctgtgctgct aagtaggcta gggcaaaaaa caacaacaac
     2881 aaaatcgtta tttcagagta ttgcttttca catttatggc tctgtagcaa caagaatagc
     2941 agtaggggtg atatgtatac ttttgcttca ctaattgtaa ctgagcacac ataggaaagt
     3001 ctagacactg tcagtgtaat atgcgttttc gatgtcatgc agttgccaag tccattctaa
     3061 aatgccacag atgtgtgttg ctcccagtct gtgaccgagt ggtgccacag aacactgatc
     3121 cttgacactt ccaaaaacaa aaaacaaaac aaaacaaaaa ctaagcctcc acaaaatgtc
     3181 aactgcaagg gtctaccttt agggaaatca atgccaaact gactaaaggg gaccccagcc
     3241 cagtgtgtgt gaatcgttta ggccccagtc attttgcact gtgagttttc gtgacaagat
     3301 gttgcgggag cccacggaag tgtgtcagaa ggggtcgtga tccaaatact gggagtgttt
     3361 gttttcagga ttttaaatgt gtcacggatg cttgtctgat ttttttaacc ttccataatc
     3421 acaaacagga atataggcct ttgaatctga aatggacaaa ggaagggtct cccagcctgg
     3481 ctggggcaca gcactaagtg atgggagagg taatggggac ctgtagaggt gttcatcaga
     3541 tactgaagga agatcatttc ctccttgtga tacttgacgg tgatactatc ttactataat
     3601 agatatgata atttgtttaa aatcaaaatg ttctttgtga tacaaacgaa gactacggcc
     3661 tggggacgtt attctttcta atggaaggac ataaatctat tttatgtagt tttaaataga
     3721 atgcctaaat taggctgtgg gagataattt ttagtggtta taggaaagag caaatttagg
     3781 gggagttgaa cttcaggcct tttattcctg ggaagatatc tatagagaaa actttaaaat
     3841 actttttgat tagaaatata catgtgccca tgtaattaac aacagaatgt gatcattctg
     3901 caagtgtggt gtcatcctaa cttgtacgcc cctaaaactt attggaataa caattatgca
     3961 tacatgaact atgccagagt aatgtttaca gatacttcgt aaccagtttc aggaggcatt
     4021 tttaggtaga tgtatagttt ttagcccaac ttatttcaga atggtttgtt aacattttgc
     4081 tttggtttac aatatgtcat gttgaataca aagaaggttc tcagcagcaa agggattaca
     4141 aataatcaag attcagcctt ctaagaaaga ggcacctcca agttcccatg tcttatttta
     4201 tgagaaccat ggaataaatc tatagataac ggaaaattat tcacaaaagg gttacatgtg
     4261 acacaagtaa atggtctgac aaaaagtttt atttagttaa gtggcatgtg atgtttggag
     4321 ccatataccg taaaatatat atccaaaact tttcacctca gatttcagca attggcatag
     4381 gatctgtgaa acacttctgc ttcggtatta ggttgaatca ctaggcatct gtttaaagag
     4441 tggagtcata tacacagttg aactgtttct tgaaacattt gggtccttcc tcatgctttt
     4501 tcaggtatct ggaagttgca ttgggtcaaa ctggactcat caagtttagt acagattcct
     4561 ttttttgtgc ttatagtgaa acgtgagcac gtttcttggc aaactcccgc acctttaaga
     4621 tgcttaagtc agttggcttt cagtcccatg ccttatttcc tccaaggcat gccttgattt
     4681 ctcagaaatg cactcttctc tcactgctca aatttgtctg ggaggaatga taacgtatcg
     4741 aatagactat atacagagtc tgtttccttg gggagttgta tgccacacaa ttactaaatt
     4801 cttctaaatt cttttttttc cccaaaaccc tgccctccag cgtctgtcac accatcagtt
     4861 cataaataat agaaccattg aaacaataca tcagcctcta gttgatcctc ctaaggtagc
     4921 cattatacta atcaaatact gtgtgaacag gaaaggaaag cattaccttt aagagaagct
     4981 ttaaaatatg aatttatcaa catttcacaa gaaataggtt tacagaagac attggaataa
     5041 aatgtgtacc acgctttgcc tgatgctatg aggtacatga ttaaaaaaaa aaaaaaaaaa
     5101 aactccctta gaccagcagc cattagcata
//
LOCUS       XM_032618485            1431 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane bound O-acyltransferase domain
            containing 4 (MBOAT4), mRNA.
ACCESSION   XM_032618485
VERSION     XM_032618485.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1431
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1431
                     /gene="MBOAT4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 8 Proteins, and 13%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746783"
     CDS             58..1374
                     /gene="MBOAT4"
                     /codon_start=1
                     /product="ghrelin O-acyltransferase"
                     /protein_id="XP_032474376.1"
                     /db_xref="GeneID:116746783"
                     /translation="MMDWLQLFFLHPVSLYQVAAFPFALLFNYLCIMDSFSTHARYLF
                     LLVVGEALAVAAMGSFAVLVFIPALCTVVLIHSLGPQDVHRLTFLFQMSWQTLCHLGL
                     HYTEYYLQEAPSTRFCVTLSSLMLLTQRVTSLSLDIREGKVAAAAAGGGIRNSSSLSE
                     RLWGALPYFSYLLFFPALLGGPLCSFQRFQARVQGPSSLYPRHSFWALTRRGLQILGL
                     ECLKVVVRRAVSAGAGLTDCRQLQCVYVTWSTAGLFKLTYYSHWLLDDSLLYAAGFGS
                     EFGQSPGEEGYIPDADIWTLETTHRIALFTRKWNQSTARWLRRLVFQQGRTWPLLQTF
                     VFSAWWHGLHPGQVFGFLCWAVMVEADYLIHTFANVFIRSGPMRVLYRTLTWAHTQLI
                     LAYIMLAVEVRSLSSLWLLWNSYNSVFPTVYCILLFVLAKRKHKFN"
     misc_feature    109..1347
                     /gene="MBOAT4"
                     /note="membrane-bound O-acyltransferase family; Region:
                     MBOAT; cl00738"
                     /db_xref="CDD:445070"
ORIGIN      
        1 ttccaggaaa gcatccgtta aggattctgg aaaggacagt atcttttgtt ccagttcatg
       61 atggattggc ttcagctgtt cttcctccat cctgtatcac tttatcaagt ggctgctttt
      121 ccttttgcgc ttctctttaa ttatctctgc attatggatt cattttccac tcatgccagg
      181 tacctgttcc tcctggtggt aggagaagcc ctggcagtag ccgccatggg ttccttcgct
      241 gtgctggtct tcatccccgc tctgtgcacc gtggtcctga tccactcgct gggcccccag
      301 gacgtccaca ggctgacttt cctctttcag atgagctggc agacgctgtg ccacctgggt
      361 ctgcactata cggagtatta tctgcaagaa gctccttcca cgaggttctg cgtcactctt
      421 tcttccctca tgctcttgac ccagagggtc acatccctgt ctctggacat tcgtgagggg
      481 aaagtggcag cagcagcagc aggaggaggc atcaggaaca gtagctcttt gtctgagcgt
      541 ctgtgggggg ctctgcccta tttcagctac ttgctctttt tccctgctct cctaggaggc
      601 cccctctgtt ccttccagag atttcaggct cgtgttcaag ggcccagcag tttgtatccc
      661 aggcactctt tctgggctct gacccggagg ggtctgcaga ttctgggact agagtgtctg
      721 aaggtcgtgg tgaggcgggc ggtgagtgca ggggcaggac tgacggactg ccggcagctg
      781 cagtgtgtct atgtcacgtg gtccactgcc gggctcttca aactcaccta ctactcccac
      841 tggctcctgg atgactccct cctctacgca gcgggctttg gatctgagtt tggtcagagc
      901 cccggtgagg agggatacat ccctgatgcg gacatttgga cgctggaaac aacccacagg
      961 atagctctgt tcaccagaaa gtggaaccaa agcacagctc ggtggctccg acgcctcgtt
     1021 ttccagcagg gcaggacctg gcccttgttg cagacgttcg tcttctcggc ctggtggcac
     1081 ggactccacc cgggacaggt gtttggtttc ctctgctggg ctgtgatggt ggaagccgac
     1141 tacctgattc acacctttgc caatgtgttc atcagatccg ggccgatgcg ggtcctctac
     1201 agaactctca cctgggccca cacccagctc atccttgcct acataatgct ggccgtggag
     1261 gtccggagcc tctcctctct ctggctgctg tggaattctt acaacagcgt ctttcccacg
     1321 gtgtattgta ttttgctttt tgttttagcg aagagaaagc ataaatttaa ctgacatctt
     1381 tccccaactt gcatctaata cacccgtgaa acagacttta gaaagtacca g
//
LOCUS       XR_004347872             344 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746784
            (LOC116746784), ncRNA.
ACCESSION   XR_004347872
VERSION     XR_004347872.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..344
                     /gene="LOC116746784"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746784"
     ncRNA           1..344
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746784"
                     /product="uncharacterized LOC116746784"
                     /db_xref="GeneID:116746784"
ORIGIN      
        1 ttgccagact taaaacgaga aggggaagtc acggtgaatc tgaaactaag aagtccttga
       61 gaaaatgaaa acatcaggga tcaaattgaa gagagaagct gcagcctgaa acactgctgg
      121 caggtgcatg agtgaacact accctaaaag tagagaagat cctgctgacc gtggagaaaa
      181 ttaacgaaac ttagtgacac actctacaat caggagcgct gtcctgtggg gagaaaatgg
      241 ctgtttccca accgttgctg cttccgcgtc tgagaactta aggacaactg acctccttgg
      301 ttgacctatc aaacaaagag ataaggacac agacacacat agag
//
LOCUS       XM_032618486            5956 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X1, mRNA.
ACCESSION   XM_032618486
VERSION     XM_032618486.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5956
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5956
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 7
                     Proteins, and 71% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746786"
     CDS             265..3870
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X1"
                     /protein_id="XP_032474377.1"
                     /db_xref="GeneID:116746786"
                     /translation="MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRDSQSPDSA
                     WRCYNDRNQETLNGDATYSSLAAKGFRSVRPNLQEKKSPAQSQITLNGNSGGTVSPLS
                     YYQRPFSPSAYSLPGSFNSSITMQHGRSLDSSETYPQHAQSLDGSMGSSIPLYRSSEE
                     EKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMY
                     NTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHIPPP
                     VPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPVSLYQS
                     SIDRSLERPTSSASMASDFRKRRKSEPAVGQPRGLGDPTASRTSPGRADLPGSSSTLT
                     KSFISSSPSSPSRAKGGDDSKICPSLCSYSGLNGNPSHELDYCNTYRQHLDIPHDSQR
                     AITFKNGWQMARQNAEIWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKAKSESMGSL
                     LCEEDSKESCPVTWASPYIQEGHSNSRSRLRHRSAHDAPGFLKLYKKMHRINRKDLMN
                     SEVICSVKSRIMQYEKEQQHKALLHGCSQSSTEEVPRDMVPTRISEFEKLIQKSKSMP
                     NLGDEMLSPVTLEPQQNGLCPQRRFSIESLLEEENQSRHPSQVQRSYKSKTLVPIHIE
                     VTSDVQPRTHLDFSDSDQDGVVSDHSDYLHVEGSSFCSESDFDHFSFTSSESFYGSSH
                     HHHHHHHHHHRHLISSCKGRCPASYTRFTTMLKHERAKHENTEEPRRQETDPGLSKLA
                     FLVSPVPFRRKKNSTPKKQMEKAKCKTSVFEALDSALKDICDQIKAEKRRGSLPDNSI
                     LHRLISELLPDIPERNSSLKALKRSPMHQPFHPPSQEGAIHCPLYQNDCGRMPHSASF
                     QDDTNNNYHHQDHDSALGLQDRESPRSYTSMLTDLGRSVPRERRGTPEKEKLPAKAVY
                     DFKAQTSKELSFKKGDTVYILRRIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPAR
                     PPPPAQPGEIGEAVAKYNFSADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGI
                     FPVSYVEVIKKNTTKGAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEP
                     FQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL"
     misc_feature    772..906
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; pfam02208"
                     /db_xref="CDD:460492"
     misc_feature    3160..3324
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(3178..3180,3184..3186,3193..3195,3205..3207,
                     3259..3264,3301..3303,3307..3312)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    3385..3555
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(3403..3405,3409..3411,3418..3420,3430..3432,
                     3484..3489,3532..3534,3538..3543)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    3685..3867
                     /gene="SORBS2"
                     /note="Third (or C-terminal) Src Homology 3 domain of
                     Sorbin and SH3 domain containing 2 (Sorbs2), also called
                     Arg-binding protein 2 (ArgBP2); Region: SH3_Sorbs2_3;
                     cd11917"
                     /db_xref="CDD:212850"
     misc_feature    order(3715..3717,3721..3723,3730..3732,3742..3744,
                     3796..3801,3844..3846,3850..3855)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212850"
ORIGIN      
        1 acagattgtt ggctcagaga gcatctgtct gcatgctgaa gctgaggctg agaaggaggt
       61 ccctgtgtag ccacttgact gacagagaca cttgggttgg acttaatctt aaacctctgg
      121 agttcaagac cttttaaaaa gggctaaata aacaatctcc acgtgtaaaa ggccaatgac
      181 tcctacctct cttcagagca actgttgaac ccggctgcct gtaggaaaac tgaagacttt
      241 aataacaaac cctccaaggt caaaatgaac acagatagcg gtgggtgtgc tcgcaaacgt
      301 gctgccatgt ctgttacatt aacatctgtg aagagagttc aaagttctcc aaacctattg
      361 gctgcagggc gtgattctca gtcaccggac tcagcttgga gatgttacaa tgatcgaaat
      421 caagagacac tgaatggaga tgctacatat tcctctcttg cagcaaaagg ttttagaagc
      481 gttcgaccaa atctacaaga aaaaaaatca ccagctcaga gccagataac gctgaatgga
      541 aactctggag gcactgtgag tccactgagt tactatcaaa ggccgttttc cccttctgcc
      601 tactcgctac caggctcatt caattcaagc attaccatgc agcatggccg gtcacttgat
      661 tcctcagaga cataccccca gcatgcacag tctctggacg gcagcatggg cagctcgata
      721 ccactgtaca gatcctcaga ggaggagaag agagtgacag tcatcaaagc gccgcactac
      781 ccggggatcg ggccggtgga tgaatccgga atccccacgg caattagaac gacagttgac
      841 aggccaaagg actggtacaa gaccatgttt aagcaaatcc acatggtgca caagccggat
      901 gatgacacag acatgtataa tactccttat acatataatg caggcctgta caactcaccc
      961 tacagtgctc agtcacatcc tgctgccaag acccagacct acagacccct ctccaaaagc
     1021 cactccgaca acggcactga tgcctttaag gatgcttcct ctcctgtccc tcccccacac
     1081 attcctcctc cagtcccacc acttcgacca agagatcggt cttcaacaga aaagcatgac
     1141 tgggaccctc cagacagaaa agtggacaca aggaaatttc gttctgagcc aaggagtatt
     1201 tttgaatatg aacctgggaa gtcatccatt ctgcagcatg aaagaccagt ctccttgtat
     1261 caatcctcta tagataggag cctggaaaga cccactagtt ctgcaagcat ggccagtgac
     1321 ttcaggaaaa ggaggaagag cgagcctgcg gtggggcagc cgaggggcct gggggatcca
     1381 actgcaagca gaactagccc aggtcgagca gacctcccag gatcaagctc caccctgaca
     1441 aagtccttca ttagttcttc tccttcttcc ccatcaaggg caaaaggtgg ggacgatagc
     1501 aaaatttgtc catccctttg cagttactca gggctcaacg gcaacccctc ccatgagtta
     1561 gattactgta acacttacag acagcatttg gacatcccac atgactcgca gagggccatt
     1621 actttcaaaa atggctggca aatggcccgg caaaacgcag agatctggag cagcactgaa
     1681 gaaacggttt cccccaaaat caaatcccgt agctgtgatg accttttaaa cgatgactgc
     1741 gatagttttc ctgatccgaa agccaagtca gaaagtatgg gttctctgtt atgtgaagag
     1801 gactccaagg agagctgccc cgtaacatgg gcttccccct acatccagga gggccacagt
     1861 aatagcagat caaggctccg acacagatca gcccacgatg ccccagggtt cctaaaattg
     1921 tacaagaaaa tgcaccgcat caaccgcaag gatttaatga attcagaggt gatttgctct
     1981 gtaaagtcaa gaataatgca gtacgaaaag gagcagcaac acaaggctct gctccatgga
     2041 tgcagccagt cctccactga ggaggtgccc agggacatgg tccccacccg catttctgaa
     2101 tttgaaaagt tgattcagaa gtcaaaatcc atgccaaatt taggagatga aatgttatct
     2161 cctgtaaccc tagaaccaca acaaaatggt ttatgtcccc aaaggcgatt ttccattgag
     2221 tctttgctgg aggaagaaaa tcaaagtaga cacccttctc aggtacaacg aagctacaag
     2281 tctaaaaccc tggtgcccat ccacattgaa gtcaccagtg atgtgcagcc cagaacccat
     2341 ctggactttt ctgatagtga ccaggatgga gtcgtgtctg accacagtga ttaccttcat
     2401 gtagaaggat cgtccttttg cagtgagagt gactttgatc acttttcttt cacatcctct
     2461 gaaagttttt atggatccag ccaccatcac caccaccatc accaccacca tcaccggcac
     2521 ctcatcagct cctgcaaagg cagatgccct gcctcctata ctcgatttac aacaatgtta
     2581 aaacatgaaa gagctaaaca cgaaaatact gaagagccca gaagacaaga aacggaccct
     2641 ggcctttcta aactggcatt tctagtcagt cccgtgcctt tccggaggaa aaaaaattca
     2701 actcccaaaa aacagatgga aaaggcaaaa tgtaaaacat ctgtatttga ggctctggac
     2761 tctgccctta aagacatttg tgaccaaatt aaggctgaaa agagaagggg aagtttgcca
     2821 gacaacagta tactgcaccg tcttatcagt gaactgctgc cagatattcc agaaaggaat
     2881 tcatcactca aagctctaaa aaggagcccc atgcaccagc ctttccaccc accatctcaa
     2941 gaaggtgcta ttcattgtcc actgtaccag aacgattgtg ggagaatgcc tcacagtgcc
     3001 tccttccaag acgacaccaa caacaactac caccaccaag accacgacag tgcactgggc
     3061 ctccaagacc gtgagtcccc tagaagttac acatccatgc tgaccgattt ggggagaagt
     3121 gtaccaaggg aaagaagagg aactccagaa aaagagaaat tgcctgcaaa agctgtttac
     3181 gattttaagg ctcagacatc caaggagctg tcatttaaga aaggagatac tgtctacatc
     3241 ctcaggagaa ttgatcaaaa ctggtatgaa ggagagcacc acgggagagt gggcattttc
     3301 ccaatctcat acgtagagaa actcacacct cctgagaaag cacagcctgc cagaccacct
     3361 ccccctgccc agcctggaga aatcggagaa gctgtagcca aatacaattt cagcgctgac
     3421 acaaatgtgg agctatcgct gagaaaggga gatagaatta ttcttcttaa aagagttgat
     3481 caaaactggt atgaaggtaa aattccagga accaacagac aaggcatctt ccctgtttcc
     3541 tatgtagaag tcatcaagaa gaatacaacc aaaggtgctg aggattaccc tgaccctcca
     3601 ataccccaca gctattctag tgatagaatc cacagcttaa gttcaaataa gccacagcgt
     3661 cctgtgttta ctcatgaaaa cattcaaggt gggggggaac cgtttcaggc tctgtataac
     3721 tatactccta ggaatgaaga cgagctggag ctcagagaaa gtgatgtcat tgacgtgatg
     3781 gaaaaatgtg atgatggatg gtttgtggga acctcaagaa gaaccaaatt ctttggtact
     3841 tttcccggga actatgtcaa gaggctgtga atcactctcc ccattattta tgctgcattt
     3901 cagcaccaca tctgcataac cttgcctgaa agatctccac aggcctcctg ctgttatgcc
     3961 ttctggtttc caatagaagt cacccaccat caccatctcc atctgccacc aaaccaccag
     4021 caatggaact gccgctgcgg tggggagatt ggaggatttg cttccatgtg aaagtgcata
     4081 ttcctgccat ctgctctaaa ctttgaaaag tcaatatgca gcagcagaaa gaaaatcatt
     4141 acacttaata acggttgagt agttgaggca aaaaagtaag tgtctcaagg aggctctctt
     4201 gtccactctg aaagatgttc tcccctcagg caaccagaag cttgtttatt actacttgct
     4261 ggggtttgca ttttcacctt cttagcttgg cagtatattt tcctttcacg agtttgccta
     4321 gtgtcctggt ttacacgata cgacaactgt acttcagcta ttgtttgcct gcacttatat
     4381 gttgtaatat gcacagtgat tccagaatct aaagcgagag taggaaagtt aattcgaatg
     4441 agtgtgattt tgttgaattg aatgtgagtt tcaaatagga gtcttctgca ggattttttt
     4501 ttttttttgt actttttaga agtgcaaaca ataagtgaat aagagccttt ggtaataatc
     4561 aggagaatat aagaggttta gctagattac agaaaacgat tgtgttgtaa agttgcattg
     4621 ctattttata ttaaaatgta ataattagca tcatgaacaa tgagctctta gtgttttatt
     4681 tatctgataa aagttaaata aaagcagtgt tagtgagagg tgcaaagaat cattctaaca
     4741 tagacacttg aaagcatctg taagcaatat tcataggtaa gatttcactg tgtgtacaca
     4801 tacacatttg agattgtatg agaacagaca atccataaga tatgttgtac atttatggaa
     4861 atgtaaaaga atctcacata ttattttata gaaatagagt acttcagaag tatcacaagt
     4921 attaaggctg gttttagtaa ggattatgat tagtacaatt atttttacta tgataattat
     4981 ttttcttctc tggaactcag aatcctggct acatttgagg acagggatat gttgagcctg
     5041 attttcctag tgtgtgtaaa atatttcctc agaatacatt aggcactttt tagaagcaat
     5101 gttaaatcat tcaggttaaa ttttctgccc tgcagtagaa accttgaaga tgatattggg
     5161 acctgaaaga tttaatgtgc ttaacagtgc ctgaattaca ccccgagaac tagctttgta
     5221 tttcttatga ctttgcataa gaactattca tatttggatc ctgagcacca tatagacaaa
     5281 actttttatg gcatttcttc tgtgaacagt ggttgatctt ttcacaatgc atgtagactc
     5341 tagaattttg tacagatgtt tgctcatttt ttgtatggac tatttagttg ttgagaaaac
     5401 aggggaattt cctaattcgg tctttatcct tcctttaaac taagctaaaa cactttcaac
     5461 agattaccct ttacatctcc cacaaatcat cattatgcct tgacagtgca attctgtaag
     5521 acagcacttc tgcaaaagtt tatgaacata aaacatctta gcagccaaac tgaaatgtat
     5581 ataactaccg attagagagg aatttcatta gaaagaaggt aaagaaacat ctttgattag
     5641 ccttgattac taccttgatt actgtcaagt tcacagccag ctttatattt taaaggcttt
     5701 gggtttgaaa ttaggtcaac tgcatgcagc tttgctgata aatgaataat tacctttgat
     5761 gccatttatg ggaaaaaatt caatatctgt tgcctgtcat atttaagaaa aattaatgtt
     5821 tctattctct gtatctgatt ttaaaaggaa aaatattcat acttagcttt taggtaattg
     5881 actttgaatt cttacaagca aaggtcattg tgtttttctt gaataggcat ctaataaatt
     5941 ttgcttggaa gcatac
//
LOCUS       XM_032618487            5899 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X2, mRNA.
ACCESSION   XM_032618487
VERSION     XM_032618487.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5899
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5899
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 long SRA reads, 3
                     Proteins, and 68% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746786"
     CDS             580..3813
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X2"
                     /protein_id="XP_032474378.1"
                     /db_xref="GeneID:116746786"
                     /translation="MQHGRSLDSSETYPQHAQSLDGSMGSSIPLYRSSEEEKRVTVIK
                     APHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNA
                     GLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHIPPPVPPLRPRD
                     RSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPVSLYQSSIDRSLER
                     PTSSASMASDFRKRRKSEPAVGQPRGLGDPTASRTSPGRADLPGSSSTLTKSFISSSP
                     SSPSRAKGGDDSKICPSLCSYSGLNGNPSHELDYCNTYRQHLDIPHDSQRAITFKNGW
                     QMARQNAEIWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKAKSESMGSLLCEEDSKE
                     SCPVTWASPYIQEGHSNSRSRLRHRSAHDAPGFLKLYKKMHRINRKDLMNSEVICSVK
                     SRIMQYEKEQQHKALLHGCSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLS
                     PVTLEPQQNGLCPQRRFSIESLLEEENQSRHPSQVQRSYKSKTLVPIHIEVTSDVQPR
                     THLDFSDSDQDGVVSDHSDYLHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHH
                     HHRHLISSCKGRCPASYTRFTTMLKHERAKHENTEEPRRQETDPGLSKLAFLVSPVPF
                     RRKKNSTPKKQMEKAKCKTSVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISEL
                     LPDIPERNSSLKALKRSPMHQPFHPPSQEGAIHCPLYQNDCGRMPHSASFQDDTNNNY
                     HHQDHDSALGLQDRESPRSYTSMLTDLGRSVPRERRGTPEKEKLPAKAVYDFKAQTSK
                     ELSFKKGDTVYILRRIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQPG
                     EIGEAVAKYNFSADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEV
                     IKKNTTKGAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYT
                     PRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL"
     misc_feature    715..849
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; pfam02208"
                     /db_xref="CDD:460492"
     misc_feature    3103..3267
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(3121..3123,3127..3129,3136..3138,3148..3150,
                     3202..3207,3244..3246,3250..3255)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    3328..3498
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(3346..3348,3352..3354,3361..3363,3373..3375,
                     3427..3432,3475..3477,3481..3486)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    3628..3810
                     /gene="SORBS2"
                     /note="Third (or C-terminal) Src Homology 3 domain of
                     Sorbin and SH3 domain containing 2 (Sorbs2), also called
                     Arg-binding protein 2 (ArgBP2); Region: SH3_Sorbs2_3;
                     cd11917"
                     /db_xref="CDD:212850"
     misc_feature    order(3658..3660,3664..3666,3673..3675,3685..3687,
                     3739..3744,3787..3789,3793..3798)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212850"
ORIGIN      
        1 agtctccttt tattgcggac gaacaccaca tacatgttgt aacgctccct atgttggcag
       61 cagtcaccaa gcagaccccg tagctaagaa gagagagata tatgcccaag caactcattc
      121 tgcacagcag ccaacaagac gatattcctg tgctggaatg ttctcgttca aagacacttg
      181 ggttggactt aatcttaaac ctctggagtt caagaccttt taaaaagggc taaataaaca
      241 atctccacgt gtaaaaggcc aatgactcct acctctcttc agagcaactg ttgaacccgg
      301 ctgcctgtag ggcgtgattc tcagtcaccg gactcagctt ggagatgtta caatgatcga
      361 aatcaagaga cactgaatgg agatgctaca tattcctctc ttgcagcaaa aggttttaga
      421 agcgttcgac caaatctaca agaaaaaaaa tcaccagctc agagccagat aacgctgaat
      481 ggaaactctg gaggcactgt gagtccactg agttactatc aaaggccgtt ttccccttct
      541 gcctactcgc taccaggctc attcaattca agcattacca tgcagcatgg ccggtcactt
      601 gattcctcag agacataccc ccagcatgca cagtctctgg acggcagcat gggcagctcg
      661 ataccactgt acagatcctc agaggaggag aagagagtga cagtcatcaa agcgccgcac
      721 tacccgggga tcgggccggt ggatgaatcc ggaatcccca cggcaattag aacgacagtt
      781 gacaggccaa aggactggta caagaccatg tttaagcaaa tccacatggt gcacaagccg
      841 gatgatgaca cagacatgta taatactcct tatacatata atgcaggcct gtacaactca
      901 ccctacagtg ctcagtcaca tcctgctgcc aagacccaga cctacagacc cctctccaaa
      961 agccactccg acaacggcac tgatgccttt aaggatgctt cctctcctgt ccctccccca
     1021 cacattcctc ctccagtccc accacttcga ccaagagatc ggtcttcaac agaaaagcat
     1081 gactgggacc ctccagacag aaaagtggac acaaggaaat ttcgttctga gccaaggagt
     1141 atttttgaat atgaacctgg gaagtcatcc attctgcagc atgaaagacc agtctccttg
     1201 tatcaatcct ctatagatag gagcctggaa agacccacta gttctgcaag catggccagt
     1261 gacttcagga aaaggaggaa gagcgagcct gcggtggggc agccgagggg cctgggggat
     1321 ccaactgcaa gcagaactag cccaggtcga gcagacctcc caggatcaag ctccaccctg
     1381 acaaagtcct tcattagttc ttctccttct tccccatcaa gggcaaaagg tggggacgat
     1441 agcaaaattt gtccatccct ttgcagttac tcagggctca acggcaaccc ctcccatgag
     1501 ttagattact gtaacactta cagacagcat ttggacatcc cacatgactc gcagagggcc
     1561 attactttca aaaatggctg gcaaatggcc cggcaaaacg cagagatctg gagcagcact
     1621 gaagaaacgg tttcccccaa aatcaaatcc cgtagctgtg atgacctttt aaacgatgac
     1681 tgcgatagtt ttcctgatcc gaaagccaag tcagaaagta tgggttctct gttatgtgaa
     1741 gaggactcca aggagagctg ccccgtaaca tgggcttccc cctacatcca ggagggccac
     1801 agtaatagca gatcaaggct ccgacacaga tcagcccacg atgccccagg gttcctaaaa
     1861 ttgtacaaga aaatgcaccg catcaaccgc aaggatttaa tgaattcaga ggtgatttgc
     1921 tctgtaaagt caagaataat gcagtacgaa aaggagcagc aacacaaggc tctgctccat
     1981 ggatgcagcc agtcctccac tgaggaggtg cccagggaca tggtccccac ccgcatttct
     2041 gaatttgaaa agttgattca gaagtcaaaa tccatgccaa atttaggaga tgaaatgtta
     2101 tctcctgtaa ccctagaacc acaacaaaat ggtttatgtc cccaaaggcg attttccatt
     2161 gagtctttgc tggaggaaga aaatcaaagt agacaccctt ctcaggtaca acgaagctac
     2221 aagtctaaaa ccctggtgcc catccacatt gaagtcacca gtgatgtgca gcccagaacc
     2281 catctggact tttctgatag tgaccaggat ggagtcgtgt ctgaccacag tgattacctt
     2341 catgtagaag gatcgtcctt ttgcagtgag agtgactttg atcacttttc tttcacatcc
     2401 tctgaaagtt tttatggatc cagccaccat caccaccacc atcaccacca ccatcaccgg
     2461 cacctcatca gctcctgcaa aggcagatgc cctgcctcct atactcgatt tacaacaatg
     2521 ttaaaacatg aaagagctaa acacgaaaat actgaagagc ccagaagaca agaaacggac
     2581 cctggccttt ctaaactggc atttctagtc agtcccgtgc ctttccggag gaaaaaaaat
     2641 tcaactccca aaaaacagat ggaaaaggca aaatgtaaaa catctgtatt tgaggctctg
     2701 gactctgccc ttaaagacat ttgtgaccaa attaaggctg aaaagagaag gggaagtttg
     2761 ccagacaaca gtatactgca ccgtcttatc agtgaactgc tgccagatat tccagaaagg
     2821 aattcatcac tcaaagctct aaaaaggagc cccatgcacc agcctttcca cccaccatct
     2881 caagaaggtg ctattcattg tccactgtac cagaacgatt gtgggagaat gcctcacagt
     2941 gcctccttcc aagacgacac caacaacaac taccaccacc aagaccacga cagtgcactg
     3001 ggcctccaag accgtgagtc ccctagaagt tacacatcca tgctgaccga tttggggaga
     3061 agtgtaccaa gggaaagaag aggaactcca gaaaaagaga aattgcctgc aaaagctgtt
     3121 tacgatttta aggctcagac atccaaggag ctgtcattta agaaaggaga tactgtctac
     3181 atcctcagga gaattgatca aaactggtat gaaggagagc accacgggag agtgggcatt
     3241 ttcccaatct catacgtaga gaaactcaca cctcctgaga aagcacagcc tgccagacca
     3301 cctccccctg cccagcctgg agaaatcgga gaagctgtag ccaaatacaa tttcagcgct
     3361 gacacaaatg tggagctatc gctgagaaag ggagatagaa ttattcttct taaaagagtt
     3421 gatcaaaact ggtatgaagg taaaattcca ggaaccaaca gacaaggcat cttccctgtt
     3481 tcctatgtag aagtcatcaa gaagaataca accaaaggtg ctgaggatta ccctgaccct
     3541 ccaatacccc acagctattc tagtgataga atccacagct taagttcaaa taagccacag
     3601 cgtcctgtgt ttactcatga aaacattcaa ggtggggggg aaccgtttca ggctctgtat
     3661 aactatactc ctaggaatga agacgagctg gagctcagag aaagtgatgt cattgacgtg
     3721 atggaaaaat gtgatgatgg atggtttgtg ggaacctcaa gaagaaccaa attctttggt
     3781 acttttcccg ggaactatgt caagaggctg tgaatcactc tccccattat ttatgctgca
     3841 tttcagcacc acatctgcat aaccttgcct gaaagatctc cacaggcctc ctgctgttat
     3901 gccttctggt ttccaataga agtcacccac catcaccatc tccatctgcc accaaaccac
     3961 cagcaatgga actgccgctg cggtggggag attggaggat ttgcttccat gtgaaagtgc
     4021 atattcctgc catctgctct aaactttgaa aagtcaatat gcagcagcag aaagaaaatc
     4081 attacactta ataacggttg agtagttgag gcaaaaaagt aagtgtctca aggaggctct
     4141 cttgtccact ctgaaagatg ttctcccctc aggcaaccag aagcttgttt attactactt
     4201 gctggggttt gcattttcac cttcttagct tggcagtata ttttcctttc acgagtttgc
     4261 ctagtgtcct ggtttacacg atacgacaac tgtacttcag ctattgtttg cctgcactta
     4321 tatgttgtaa tatgcacagt gattccagaa tctaaagcga gagtaggaaa gttaattcga
     4381 atgagtgtga ttttgttgaa ttgaatgtga gtttcaaata ggagtcttct gcaggatttt
     4441 tttttttttt tgtacttttt agaagtgcaa acaataagtg aataagagcc tttggtaata
     4501 atcaggagaa tataagaggt ttagctagat tacagaaaac gattgtgttg taaagttgca
     4561 ttgctatttt atattaaaat gtaataatta gcatcatgaa caatgagctc ttagtgtttt
     4621 atttatctga taaaagttaa ataaaagcag tgttagtgag aggtgcaaag aatcattcta
     4681 acatagacac ttgaaagcat ctgtaagcaa tattcatagg taagatttca ctgtgtgtac
     4741 acatacacat ttgagattgt atgagaacag acaatccata agatatgttg tacatttatg
     4801 gaaatgtaaa agaatctcac atattatttt atagaaatag agtacttcag aagtatcaca
     4861 agtattaagg ctggttttag taaggattat gattagtaca attattttta ctatgataat
     4921 tatttttctt ctctggaact cagaatcctg gctacatttg aggacaggga tatgttgagc
     4981 ctgattttcc tagtgtgtgt aaaatatttc ctcagaatac attaggcact ttttagaagc
     5041 aatgttaaat cattcaggtt aaattttctg ccctgcagta gaaaccttga agatgatatt
     5101 gggacctgaa agatttaatg tgcttaacag tgcctgaatt acaccccgag aactagcttt
     5161 gtatttctta tgactttgca taagaactat tcatatttgg atcctgagca ccatatagac
     5221 aaaacttttt atggcatttc ttctgtgaac agtggttgat cttttcacaa tgcatgtaga
     5281 ctctagaatt ttgtacagat gtttgctcat tttttgtatg gactatttag ttgttgagaa
     5341 aacaggggaa tttcctaatt cggtctttat ccttccttta aactaagcta aaacactttc
     5401 aacagattac cctttacatc tcccacaaat catcattatg ccttgacagt gcaattctgt
     5461 aagacagcac ttctgcaaaa gtttatgaac ataaaacatc ttagcagcca aactgaaatg
     5521 tatataacta ccgattagag aggaatttca ttagaaagaa ggtaaagaaa catctttgat
     5581 tagccttgat tactaccttg attactgtca agttcacagc cagctttata ttttaaaggc
     5641 tttgggtttg aaattaggtc aactgcatgc agctttgctg ataaatgaat aattaccttt
     5701 gatgccattt atgggaaaaa attcaatatc tgttgcctgt catatttaag aaaaattaat
     5761 gtttctattc tctgtatctg attttaaaag gaaaaatatt catacttagc ttttaggtaa
     5821 ttgactttga attcttacaa gcaaaggtca ttgtgttttt cttgaatagg catctaataa
     5881 attttgcttg gaagcatac
//
LOCUS       XM_032618488            5104 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X3, mRNA.
ACCESSION   XM_032618488
VERSION     XM_032618488.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5104
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5104
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 4 Proteins, and
                     67% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746786"
     CDS             1..3018
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X3"
                     /protein_id="XP_032474379.1"
                     /db_xref="GeneID:116746786"
                     /translation="MRAAAPLQTVDRPKDWYKTMFKQIHMVHKPGLYNSPYSAQSHPA
                     AKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHIPPPVPPLRPRDRSSTEKHDWDPPDR
                     KVDTRKFRSEPRSIFEYEPGKSSILQHERPVSLYQSSIDRSLERPTSSASMASDFRKR
                     RKSEPAVGQPRGLGDPTASRTSPGRADLPGSSSTLTKSFISSSPSSPSRAKGGDDSKI
                     CPSLCSYSGLNGNPSHELDYCNTYRQHLDIPHDSQRAITFKNGWQMARQNAEIWSSTE
                     ETVSPKIKSRSCDDLLNDDCDSFPDPKAKSESMGSLLCEEDSKESCPVTWASPYIQEG
                     HSNSRSRLRHRSAHDAPGFLKLYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKA
                     LLHGCSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPQ
                     RRFSIESLLEEENQSRHPSQVQRSYKSKTLVPIHIEVTSDVQPRTHLDFSDSDQDGVV
                     SDHSDYLHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISSCKGRCP
                     ASYTRFTTMLKHERAKHENTEEPRRQETDPGLSKLAFLVSPVPFRRKKNSTPKKQMEK
                     AKCKTSVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKAL
                     KRSPMHQPFHPPSQEGAIHCPLYQNDCGRMPHSASFQDDTNNNYHHQDHDSALGLQDR
                     ESPRSYTSMLTDLGRSVPRERRGTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILR
                     RIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQPGEIGEAVAKYNFSAD
                     TNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVIKKNTTKGAEDYPD
                     PPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDV
                     IDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL"
     misc_feature    <25..90
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; cl02617"
                     /db_xref="CDD:470634"
     misc_feature    2308..2472
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(2326..2328,2332..2334,2341..2343,2353..2355,
                     2407..2412,2449..2451,2455..2460)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    2533..2703
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(2551..2553,2557..2559,2566..2568,2578..2580,
                     2632..2637,2680..2682,2686..2691)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    2833..3015
                     /gene="SORBS2"
                     /note="Third (or C-terminal) Src Homology 3 domain of
                     Sorbin and SH3 domain containing 2 (Sorbs2), also called
                     Arg-binding protein 2 (ArgBP2); Region: SH3_Sorbs2_3;
                     cd11917"
                     /db_xref="CDD:212850"
     misc_feature    order(2863..2865,2869..2871,2878..2880,2890..2892,
                     2944..2949,2992..2994,2998..3003)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212850"
ORIGIN      
        1 atgagagcgg cagcacctct gcagacagtt gacaggccaa aggactggta caagaccatg
       61 tttaagcaaa tccacatggt gcacaagccg ggcctgtaca actcacccta cagtgctcag
      121 tcacatcctg ctgccaagac ccagacctac agacccctct ccaaaagcca ctccgacaac
      181 ggcactgatg cctttaagga tgcttcctct cctgtccctc ccccacacat tcctcctcca
      241 gtcccaccac ttcgaccaag agatcggtct tcaacagaaa agcatgactg ggaccctcca
      301 gacagaaaag tggacacaag gaaatttcgt tctgagccaa ggagtatttt tgaatatgaa
      361 cctgggaagt catccattct gcagcatgaa agaccagtct ccttgtatca atcctctata
      421 gataggagcc tggaaagacc cactagttct gcaagcatgg ccagtgactt caggaaaagg
      481 aggaagagcg agcctgcggt ggggcagccg aggggcctgg gggatccaac tgcaagcaga
      541 actagcccag gtcgagcaga cctcccagga tcaagctcca ccctgacaaa gtccttcatt
      601 agttcttctc cttcttcccc atcaagggca aaaggtgggg acgatagcaa aatttgtcca
      661 tccctttgca gttactcagg gctcaacggc aacccctccc atgagttaga ttactgtaac
      721 acttacagac agcatttgga catcccacat gactcgcaga gggccattac tttcaaaaat
      781 ggctggcaaa tggcccggca aaacgcagag atctggagca gcactgaaga aacggtttcc
      841 cccaaaatca aatcccgtag ctgtgatgac cttttaaacg atgactgcga tagttttcct
      901 gatccgaaag ccaagtcaga aagtatgggt tctctgttat gtgaagagga ctccaaggag
      961 agctgccccg taacatgggc ttccccctac atccaggagg gccacagtaa tagcagatca
     1021 aggctccgac acagatcagc ccacgatgcc ccagggttcc taaaattgta caagaaaatg
     1081 caccgcatca accgcaagga tttaatgaat tcagaggtga tttgctctgt aaagtcaaga
     1141 ataatgcagt acgaaaagga gcagcaacac aaggctctgc tccatggatg cagccagtcc
     1201 tccactgagg aggtgcccag ggacatggtc cccacccgca tttctgaatt tgaaaagttg
     1261 attcagaagt caaaatccat gccaaattta ggagatgaaa tgttatctcc tgtaacccta
     1321 gaaccacaac aaaatggttt atgtccccaa aggcgatttt ccattgagtc tttgctggag
     1381 gaagaaaatc aaagtagaca cccttctcag gtacaacgaa gctacaagtc taaaaccctg
     1441 gtgcccatcc acattgaagt caccagtgat gtgcagccca gaacccatct ggacttttct
     1501 gatagtgacc aggatggagt cgtgtctgac cacagtgatt accttcatgt agaaggatcg
     1561 tccttttgca gtgagagtga ctttgatcac ttttctttca catcctctga aagtttttat
     1621 ggatccagcc accatcacca ccaccatcac caccaccatc accggcacct catcagctcc
     1681 tgcaaaggca gatgccctgc ctcctatact cgatttacaa caatgttaaa acatgaaaga
     1741 gctaaacacg aaaatactga agagcccaga agacaagaaa cggaccctgg cctttctaaa
     1801 ctggcatttc tagtcagtcc cgtgcctttc cggaggaaaa aaaattcaac tcccaaaaaa
     1861 cagatggaaa aggcaaaatg taaaacatct gtatttgagg ctctggactc tgcccttaaa
     1921 gacatttgtg accaaattaa ggctgaaaag agaaggggaa gtttgccaga caacagtata
     1981 ctgcaccgtc ttatcagtga actgctgcca gatattccag aaaggaattc atcactcaaa
     2041 gctctaaaaa ggagccccat gcaccagcct ttccacccac catctcaaga aggtgctatt
     2101 cattgtccac tgtaccagaa cgattgtggg agaatgcctc acagtgcctc cttccaagac
     2161 gacaccaaca acaactacca ccaccaagac cacgacagtg cactgggcct ccaagaccgt
     2221 gagtccccta gaagttacac atccatgctg accgatttgg ggagaagtgt accaagggaa
     2281 agaagaggaa ctccagaaaa agagaaattg cctgcaaaag ctgtttacga ttttaaggct
     2341 cagacatcca aggagctgtc atttaagaaa ggagatactg tctacatcct caggagaatt
     2401 gatcaaaact ggtatgaagg agagcaccac gggagagtgg gcattttccc aatctcatac
     2461 gtagagaaac tcacacctcc tgagaaagca cagcctgcca gaccacctcc ccctgcccag
     2521 cctggagaaa tcggagaagc tgtagccaaa tacaatttca gcgctgacac aaatgtggag
     2581 ctatcgctga gaaagggaga tagaattatt cttcttaaaa gagttgatca aaactggtat
     2641 gaaggtaaaa ttccaggaac caacagacaa ggcatcttcc ctgtttccta tgtagaagtc
     2701 atcaagaaga atacaaccaa aggtgctgag gattaccctg accctccaat accccacagc
     2761 tattctagtg atagaatcca cagcttaagt tcaaataagc cacagcgtcc tgtgtttact
     2821 catgaaaaca ttcaaggtgg gggggaaccg tttcaggctc tgtataacta tactcctagg
     2881 aatgaagacg agctggagct cagagaaagt gatgtcattg acgtgatgga aaaatgtgat
     2941 gatggatggt ttgtgggaac ctcaagaaga accaaattct ttggtacttt tcccgggaac
     3001 tatgtcaaga ggctgtgaat cactctcccc attatttatg ctgcatttca gcaccacatc
     3061 tgcataacct tgcctgaaag atctccacag gcctcctgct gttatgcctt ctggtttcca
     3121 atagaagtca cccaccatca ccatctccat ctgccaccaa accaccagca atggaactgc
     3181 cgctgcggtg gggagattgg aggatttgct tccatgtgaa agtgcatatt cctgccatct
     3241 gctctaaact ttgaaaagtc aatatgcagc agcagaaaga aaatcattac acttaataac
     3301 ggttgagtag ttgaggcaaa aaagtaagtg tctcaaggag gctctcttgt ccactctgaa
     3361 agatgttctc ccctcaggca accagaagct tgtttattac tacttgctgg ggtttgcatt
     3421 ttcaccttct tagcttggca gtatattttc ctttcacgag tttgcctagt gtcctggttt
     3481 acacgatacg acaactgtac ttcagctatt gtttgcctgc acttatatgt tgtaatatgc
     3541 acagtgattc cagaatctaa agcgagagta ggaaagttaa ttcgaatgag tgtgattttg
     3601 ttgaattgaa tgtgagtttc aaataggagt cttctgcagg attttttttt ttttttgtac
     3661 tttttagaag tgcaaacaat aagtgaataa gagcctttgg taataatcag gagaatataa
     3721 gaggtttagc tagattacag aaaacgattg tgttgtaaag ttgcattgct attttatatt
     3781 aaaatgtaat aattagcatc atgaacaatg agctcttagt gttttattta tctgataaaa
     3841 gttaaataaa agcagtgtta gtgagaggtg caaagaatca ttctaacata gacacttgaa
     3901 agcatctgta agcaatattc ataggtaaga tttcactgtg tgtacacata cacatttgag
     3961 attgtatgag aacagacaat ccataagata tgttgtacat ttatggaaat gtaaaagaat
     4021 ctcacatatt attttataga aatagagtac ttcagaagta tcacaagtat taaggctggt
     4081 tttagtaagg attatgatta gtacaattat ttttactatg ataattattt ttcttctctg
     4141 gaactcagaa tcctggctac atttgaggac agggatatgt tgagcctgat tttcctagtg
     4201 tgtgtaaaat atttcctcag aatacattag gcacttttta gaagcaatgt taaatcattc
     4261 aggttaaatt ttctgccctg cagtagaaac cttgaagatg atattgggac ctgaaagatt
     4321 taatgtgctt aacagtgcct gaattacacc ccgagaacta gctttgtatt tcttatgact
     4381 ttgcataaga actattcata tttggatcct gagcaccata tagacaaaac tttttatggc
     4441 atttcttctg tgaacagtgg ttgatctttt cacaatgcat gtagactcta gaattttgta
     4501 cagatgtttg ctcatttttt gtatggacta tttagttgtt gagaaaacag gggaatttcc
     4561 taattcggtc tttatccttc ctttaaacta agctaaaaca ctttcaacag attacccttt
     4621 acatctccca caaatcatca ttatgccttg acagtgcaat tctgtaagac agcacttctg
     4681 caaaagttta tgaacataaa acatcttagc agccaaactg aaatgtatat aactaccgat
     4741 tagagaggaa tttcattaga aagaaggtaa agaaacatct ttgattagcc ttgattacta
     4801 ccttgattac tgtcaagttc acagccagct ttatatttta aaggctttgg gtttgaaatt
     4861 aggtcaactg catgcagctt tgctgataaa tgaataatta cctttgatgc catttatggg
     4921 aaaaaattca atatctgttg cctgtcatat ttaagaaaaa ttaatgtttc tattctctgt
     4981 atctgatttt aaaaggaaaa atattcatac ttagctttta ggtaattgac tttgaattct
     5041 tacaagcaaa ggtcattgtg tttttcttga ataggcatct aataaatttt gcttggaagc
     5101 atac
//
LOCUS       XM_032618489            4522 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X4, mRNA.
ACCESSION   XM_032618489
VERSION     XM_032618489.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4522
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4522
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746786"
     CDS             265..2436
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X4"
                     /protein_id="XP_032474380.1"
                     /db_xref="GeneID:116746786"
                     /translation="MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRDSQSPDSA
                     KGFRSVRPNLQEKKSPAQSQITLNGNSGGTVSPLSYYQRPFSPSAYSLPGSFNSSITM
                     QHGRSLDSSETYPQHAQSLDGSMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGI
                     PTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAA
                     KTQTYRPLSKSHSDNGTDAFKDASSPVPPPHIPPPVPPLRPRDRSSTEKHDWDPPDRK
                     VDTRKFRSEPRSIFEYEPGKSSILQHERPPPLPTTPTPVPRDPGRKPISLSPYGEVTG
                     SPSPPPRTSIPTPSACTPALSPIWPPKKALDYVQDHSSGVSNEVSLYQSSIDRSLERP
                     TSSASMASDFRKRRKSEPAVGQPRGLGDPTASRTSPGRADLPGSSSTLTKSFISSSPS
                     SPSRAKDRESPRSYTSMLTDLGRSVPRERRGTPEKEKLPAKAVYDFKAQTSKELSFKK
                     GDTVYILRRIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQPGEIGEAV
                     AKYNFSADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVIKKNTT
                     KGAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDE
                     LELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL"
     misc_feature    703..837
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; pfam02208"
                     /db_xref="CDD:460492"
     misc_feature    1726..1890
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(1744..1746,1750..1752,1759..1761,1771..1773,
                     1825..1830,1867..1869,1873..1878)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    1951..2121
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(1969..1971,1975..1977,1984..1986,1996..1998,
                     2050..2055,2098..2100,2104..2109)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    2251..2433
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(2281..2283,2287..2289,2296..2298,2308..2310,
                     2362..2367,2410..2412,2416..2421)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
ORIGIN      
        1 acagattgtt ggctcagaga gcatctgtct gcatgctgaa gctgaggctg agaaggaggt
       61 ccctgtgtag ccacttgact gacagagaca cttgggttgg acttaatctt aaacctctgg
      121 agttcaagac cttttaaaaa gggctaaata aacaatctcc acgtgtaaaa ggccaatgac
      181 tcctacctct cttcagagca actgttgaac ccggctgcct gtaggaaaac tgaagacttt
      241 aataacaaac cctccaaggt caaaatgaac acagatagcg gtgggtgtgc tcgcaaacgt
      301 gctgccatgt ctgttacatt aacatctgtg aagagagttc aaagttctcc aaacctattg
      361 gctgcagggc gtgattctca gtcaccggac tcagcaaaag gttttagaag cgttcgacca
      421 aatctacaag aaaaaaaatc accagctcag agccagataa cgctgaatgg aaactctgga
      481 ggcactgtga gtccactgag ttactatcaa aggccgtttt ccccttctgc ctactcgcta
      541 ccaggctcat tcaattcaag cattaccatg cagcatggcc ggtcacttga ttcctcagag
      601 acataccccc agcatgcaca gtctctggac ggcagcatgg gcagctcgat accactgtac
      661 agatcctcag aggaggagaa gagagtgaca gtcatcaaag cgccgcacta cccggggatc
      721 gggccggtgg atgaatccgg aatccccacg gcaattagaa cgacagttga caggccaaag
      781 gactggtaca agaccatgtt taagcaaatc cacatggtgc acaagccgga tgatgacaca
      841 gacatgtata atactcctta tacatataat gcaggcctgt acaactcacc ctacagtgct
      901 cagtcacatc ctgctgccaa gacccagacc tacagacccc tctccaaaag ccactccgac
      961 aacggcactg atgcctttaa ggatgcttcc tctcctgtcc ctcccccaca cattcctcct
     1021 ccagtcccac cacttcgacc aagagatcgg tcttcaacag aaaagcatga ctgggaccct
     1081 ccagacagaa aagtggacac aaggaaattt cgttctgagc caaggagtat ttttgaatat
     1141 gaacctggga agtcatccat tctgcagcat gaaagaccac cccctctccc aaccactccg
     1201 acacctgttc caagggaccc tggccggaag cctatttctc tgtcaccata tggagaagta
     1261 actggtagcc cctcccctcc gcccaggacc agcattccca caccaagcgc gtgcaccccg
     1321 gctctctctc ccatctggcc tcctaaaaag gctctggact atgttcaaga tcattcttct
     1381 ggtgtttcca atgaggtctc cttgtatcaa tcctctatag ataggagcct ggaaagaccc
     1441 actagttctg caagcatggc cagtgacttc aggaaaagga ggaagagcga gcctgcggtg
     1501 gggcagccga ggggcctggg ggatccaact gcaagcagaa ctagcccagg tcgagcagac
     1561 ctcccaggat caagctccac cctgacaaag tccttcatta gttcttctcc ttcttcccca
     1621 tcaagggcaa aagaccgtga gtcccctaga agttacacat ccatgctgac cgatttgggg
     1681 agaagtgtac caagggaaag aagaggaact ccagaaaaag agaaattgcc tgcaaaagct
     1741 gtttacgatt ttaaggctca gacatccaag gagctgtcat ttaagaaagg agatactgtc
     1801 tacatcctca ggagaattga tcaaaactgg tatgaaggag agcaccacgg gagagtgggc
     1861 attttcccaa tctcatacgt agagaaactc acacctcctg agaaagcaca gcctgccaga
     1921 ccacctcccc ctgcccagcc tggagaaatc ggagaagctg tagccaaata caatttcagc
     1981 gctgacacaa atgtggagct atcgctgaga aagggagata gaattattct tcttaaaaga
     2041 gttgatcaaa actggtatga aggtaaaatt ccaggaacca acagacaagg catcttccct
     2101 gtttcctatg tagaagtcat caagaagaat acaaccaaag gtgctgagga ttaccctgac
     2161 cctccaatac cccacagcta ttctagtgat agaatccaca gcttaagttc aaataagcca
     2221 cagcgtcctg tgtttactca tgaaaacatt caaggtgggg gggaaccgtt tcaggctctg
     2281 tataactata ctcctaggaa tgaagacgag ctggagctca gagaaagtga tgtcattgac
     2341 gtgatggaaa aatgtgatga tggatggttt gtgggaacct caagaagaac caaattcttt
     2401 ggtacttttc ccgggaacta tgtcaagagg ctgtgaatca ctctccccat tatttatgct
     2461 gcatttcagc accacatctg cataaccttg cctgaaagat ctccacaggc ctcctgctgt
     2521 tatgccttct ggtttccaat agaagtcacc caccatcacc atctccatct gccaccaaac
     2581 caccagcaat ggaactgccg ctgcggtggg gagattggag gatttgcttc catgtgaaag
     2641 tgcatattcc tgccatctgc tctaaacttt gaaaagtcaa tatgcagcag cagaaagaaa
     2701 atcattacac ttaataacgg ttgagtagtt gaggcaaaaa agtaagtgtc tcaaggaggc
     2761 tctcttgtcc actctgaaag atgttctccc ctcaggcaac cagaagcttg tttattacta
     2821 cttgctgggg tttgcatttt caccttctta gcttggcagt atattttcct ttcacgagtt
     2881 tgcctagtgt cctggtttac acgatacgac aactgtactt cagctattgt ttgcctgcac
     2941 ttatatgttg taatatgcac agtgattcca gaatctaaag cgagagtagg aaagttaatt
     3001 cgaatgagtg tgattttgtt gaattgaatg tgagtttcaa ataggagtct tctgcaggat
     3061 tttttttttt ttttgtactt tttagaagtg caaacaataa gtgaataaga gcctttggta
     3121 ataatcagga gaatataaga ggtttagcta gattacagaa aacgattgtg ttgtaaagtt
     3181 gcattgctat tttatattaa aatgtaataa ttagcatcat gaacaatgag ctcttagtgt
     3241 tttatttatc tgataaaagt taaataaaag cagtgttagt gagaggtgca aagaatcatt
     3301 ctaacataga cacttgaaag catctgtaag caatattcat aggtaagatt tcactgtgtg
     3361 tacacataca catttgagat tgtatgagaa cagacaatcc ataagatatg ttgtacattt
     3421 atggaaatgt aaaagaatct cacatattat tttatagaaa tagagtactt cagaagtatc
     3481 acaagtatta aggctggttt tagtaaggat tatgattagt acaattattt ttactatgat
     3541 aattattttt cttctctgga actcagaatc ctggctacat ttgaggacag ggatatgttg
     3601 agcctgattt tcctagtgtg tgtaaaatat ttcctcagaa tacattaggc actttttaga
     3661 agcaatgtta aatcattcag gttaaatttt ctgccctgca gtagaaacct tgaagatgat
     3721 attgggacct gaaagattta atgtgcttaa cagtgcctga attacacccc gagaactagc
     3781 tttgtatttc ttatgacttt gcataagaac tattcatatt tggatcctga gcaccatata
     3841 gacaaaactt tttatggcat ttcttctgtg aacagtggtt gatcttttca caatgcatgt
     3901 agactctaga attttgtaca gatgtttgct cattttttgt atggactatt tagttgttga
     3961 gaaaacaggg gaatttccta attcggtctt tatccttcct ttaaactaag ctaaaacact
     4021 ttcaacagat taccctttac atctcccaca aatcatcatt atgccttgac agtgcaattc
     4081 tgtaagacag cacttctgca aaagtttatg aacataaaac atcttagcag ccaaactgaa
     4141 atgtatataa ctaccgatta gagaggaatt tcattagaaa gaaggtaaag aaacatcttt
     4201 gattagcctt gattactacc ttgattactg tcaagttcac agccagcttt atattttaaa
     4261 ggctttgggt ttgaaattag gtcaactgca tgcagctttg ctgataaatg aataattacc
     4321 tttgatgcca tttatgggaa aaaattcaat atctgttgcc tgtcatattt aagaaaaatt
     4381 aatgtttcta ttctctgtat ctgattttaa aaggaaaaat attcatactt agcttttagg
     4441 taattgactt tgaattctta caagcaaagg tcattgtgtt tttcttgaat aggcatctaa
     4501 taaattttgc ttggaagcat ac
//
LOCUS       XM_032618490            4492 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X5, mRNA.
ACCESSION   XM_032618490
VERSION     XM_032618490.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4492
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4492
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746786"
     CDS             265..2406
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X5"
                     /protein_id="XP_032474381.1"
                     /db_xref="GeneID:116746786"
                     /translation="MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRDSQSPDSA
                     KGFRSVRPNLQEKKSPAQSQITLNGNSGGTVSPLSYYQRPFSPSAYSLPGSFNSSITM
                     QHGRSLDSSETYPQHAQSLDGSMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGI
                     PTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAA
                     KTQTYRPLSKSHSDNGTDAFKDASSPVPPPHIPPPVPPLRPRDRSSTEKHDWDPPDRK
                     VDTRKFRSEPRSIFEYEPGKSSILQHERPPPLPTTPTPVPRDPGRKPISLSPYGEVTG
                     SPSPPPRTSIPTPSACTPALSPIWPPKKALDYVQDHSSGVSNEVSLYQSSIDRSLERP
                     TSSASMASDFRKRRKSEPAVGQPRGLGDPTASRTSPGRADLPGSSSTLTKSFISSSPS
                     SPSRAKDRESPRSYTSMLTDLGRSVPRERRGTPEKEKLPAKAVYDFKAQTSKELSFKK
                     GDTVYILRRIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQPGEIGEAV
                     AKYNFSADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVIKKNTT
                     KGAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPNEDELELRESDVID
                     VMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL"
     misc_feature    703..837
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; pfam02208"
                     /db_xref="CDD:460492"
     misc_feature    1726..1890
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(1744..1746,1750..1752,1759..1761,1771..1773,
                     1825..1830,1867..1869,1873..1878)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    1951..2121
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(1969..1971,1975..1977,1984..1986,1996..1998,
                     2050..2055,2098..2100,2104..2109)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    2251..2403
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
ORIGIN      
        1 acagattgtt ggctcagaga gcatctgtct gcatgctgaa gctgaggctg agaaggaggt
       61 ccctgtgtag ccacttgact gacagagaca cttgggttgg acttaatctt aaacctctgg
      121 agttcaagac cttttaaaaa gggctaaata aacaatctcc acgtgtaaaa ggccaatgac
      181 tcctacctct cttcagagca actgttgaac ccggctgcct gtaggaaaac tgaagacttt
      241 aataacaaac cctccaaggt caaaatgaac acagatagcg gtgggtgtgc tcgcaaacgt
      301 gctgccatgt ctgttacatt aacatctgtg aagagagttc aaagttctcc aaacctattg
      361 gctgcagggc gtgattctca gtcaccggac tcagcaaaag gttttagaag cgttcgacca
      421 aatctacaag aaaaaaaatc accagctcag agccagataa cgctgaatgg aaactctgga
      481 ggcactgtga gtccactgag ttactatcaa aggccgtttt ccccttctgc ctactcgcta
      541 ccaggctcat tcaattcaag cattaccatg cagcatggcc ggtcacttga ttcctcagag
      601 acataccccc agcatgcaca gtctctggac ggcagcatgg gcagctcgat accactgtac
      661 agatcctcag aggaggagaa gagagtgaca gtcatcaaag cgccgcacta cccggggatc
      721 gggccggtgg atgaatccgg aatccccacg gcaattagaa cgacagttga caggccaaag
      781 gactggtaca agaccatgtt taagcaaatc cacatggtgc acaagccgga tgatgacaca
      841 gacatgtata atactcctta tacatataat gcaggcctgt acaactcacc ctacagtgct
      901 cagtcacatc ctgctgccaa gacccagacc tacagacccc tctccaaaag ccactccgac
      961 aacggcactg atgcctttaa ggatgcttcc tctcctgtcc ctcccccaca cattcctcct
     1021 ccagtcccac cacttcgacc aagagatcgg tcttcaacag aaaagcatga ctgggaccct
     1081 ccagacagaa aagtggacac aaggaaattt cgttctgagc caaggagtat ttttgaatat
     1141 gaacctggga agtcatccat tctgcagcat gaaagaccac cccctctccc aaccactccg
     1201 acacctgttc caagggaccc tggccggaag cctatttctc tgtcaccata tggagaagta
     1261 actggtagcc cctcccctcc gcccaggacc agcattccca caccaagcgc gtgcaccccg
     1321 gctctctctc ccatctggcc tcctaaaaag gctctggact atgttcaaga tcattcttct
     1381 ggtgtttcca atgaggtctc cttgtatcaa tcctctatag ataggagcct ggaaagaccc
     1441 actagttctg caagcatggc cagtgacttc aggaaaagga ggaagagcga gcctgcggtg
     1501 gggcagccga ggggcctggg ggatccaact gcaagcagaa ctagcccagg tcgagcagac
     1561 ctcccaggat caagctccac cctgacaaag tccttcatta gttcttctcc ttcttcccca
     1621 tcaagggcaa aagaccgtga gtcccctaga agttacacat ccatgctgac cgatttgggg
     1681 agaagtgtac caagggaaag aagaggaact ccagaaaaag agaaattgcc tgcaaaagct
     1741 gtttacgatt ttaaggctca gacatccaag gagctgtcat ttaagaaagg agatactgtc
     1801 tacatcctca ggagaattga tcaaaactgg tatgaaggag agcaccacgg gagagtgggc
     1861 attttcccaa tctcatacgt agagaaactc acacctcctg agaaagcaca gcctgccaga
     1921 ccacctcccc ctgcccagcc tggagaaatc ggagaagctg tagccaaata caatttcagc
     1981 gctgacacaa atgtggagct atcgctgaga aagggagata gaattattct tcttaaaaga
     2041 gttgatcaaa actggtatga aggtaaaatt ccaggaacca acagacaagg catcttccct
     2101 gtttcctatg tagaagtcat caagaagaat acaaccaaag gtgctgagga ttaccctgac
     2161 cctccaatac cccacagcta ttctagtgat agaatccaca gcttaagttc aaataagcca
     2221 cagcgtcctg tgtttactca tgaaaacatt caaggtgggg gggaaccgaa tgaagacgag
     2281 ctggagctca gagaaagtga tgtcattgac gtgatggaaa aatgtgatga tggatggttt
     2341 gtgggaacct caagaagaac caaattcttt ggtacttttc ccgggaacta tgtcaagagg
     2401 ctgtgaatca ctctccccat tatttatgct gcatttcagc accacatctg cataaccttg
     2461 cctgaaagat ctccacaggc ctcctgctgt tatgccttct ggtttccaat agaagtcacc
     2521 caccatcacc atctccatct gccaccaaac caccagcaat ggaactgccg ctgcggtggg
     2581 gagattggag gatttgcttc catgtgaaag tgcatattcc tgccatctgc tctaaacttt
     2641 gaaaagtcaa tatgcagcag cagaaagaaa atcattacac ttaataacgg ttgagtagtt
     2701 gaggcaaaaa agtaagtgtc tcaaggaggc tctcttgtcc actctgaaag atgttctccc
     2761 ctcaggcaac cagaagcttg tttattacta cttgctgggg tttgcatttt caccttctta
     2821 gcttggcagt atattttcct ttcacgagtt tgcctagtgt cctggtttac acgatacgac
     2881 aactgtactt cagctattgt ttgcctgcac ttatatgttg taatatgcac agtgattcca
     2941 gaatctaaag cgagagtagg aaagttaatt cgaatgagtg tgattttgtt gaattgaatg
     3001 tgagtttcaa ataggagtct tctgcaggat tttttttttt ttttgtactt tttagaagtg
     3061 caaacaataa gtgaataaga gcctttggta ataatcagga gaatataaga ggtttagcta
     3121 gattacagaa aacgattgtg ttgtaaagtt gcattgctat tttatattaa aatgtaataa
     3181 ttagcatcat gaacaatgag ctcttagtgt tttatttatc tgataaaagt taaataaaag
     3241 cagtgttagt gagaggtgca aagaatcatt ctaacataga cacttgaaag catctgtaag
     3301 caatattcat aggtaagatt tcactgtgtg tacacataca catttgagat tgtatgagaa
     3361 cagacaatcc ataagatatg ttgtacattt atggaaatgt aaaagaatct cacatattat
     3421 tttatagaaa tagagtactt cagaagtatc acaagtatta aggctggttt tagtaaggat
     3481 tatgattagt acaattattt ttactatgat aattattttt cttctctgga actcagaatc
     3541 ctggctacat ttgaggacag ggatatgttg agcctgattt tcctagtgtg tgtaaaatat
     3601 ttcctcagaa tacattaggc actttttaga agcaatgtta aatcattcag gttaaatttt
     3661 ctgccctgca gtagaaacct tgaagatgat attgggacct gaaagattta atgtgcttaa
     3721 cagtgcctga attacacccc gagaactagc tttgtatttc ttatgacttt gcataagaac
     3781 tattcatatt tggatcctga gcaccatata gacaaaactt tttatggcat ttcttctgtg
     3841 aacagtggtt gatcttttca caatgcatgt agactctaga attttgtaca gatgtttgct
     3901 cattttttgt atggactatt tagttgttga gaaaacaggg gaatttccta attcggtctt
     3961 tatccttcct ttaaactaag ctaaaacact ttcaacagat taccctttac atctcccaca
     4021 aatcatcatt atgccttgac agtgcaattc tgtaagacag cacttctgca aaagtttatg
     4081 aacataaaac atcttagcag ccaaactgaa atgtatataa ctaccgatta gagaggaatt
     4141 tcattagaaa gaaggtaaag aaacatcttt gattagcctt gattactacc ttgattactg
     4201 tcaagttcac agccagcttt atattttaaa ggctttgggt ttgaaattag gtcaactgca
     4261 tgcagctttg ctgataaatg aataattacc tttgatgcca tttatgggaa aaaattcaat
     4321 atctgttgcc tgtcatattt aagaaaaatt aatgtttcta ttctctgtat ctgattttaa
     4381 aaggaaaaat attcatactt agcttttagg taattgactt tgaattctta caagcaaagg
     4441 tcattgtgtt tttcttgaat aggcatctaa taaattttgc ttggaagcat ac
//
LOCUS       XM_032618491            4477 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X6, mRNA.
ACCESSION   XM_032618491
VERSION     XM_032618491.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4477
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4477
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746786"
     CDS             265..2391
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X6"
                     /protein_id="XP_032474382.1"
                     /db_xref="GeneID:116746786"
                     /translation="MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRDSQSPDSA
                     KGFRSVRPNLQEKKSPAQSQITLNGNSGGTVSPLSYYQRPFSPSAYSLPGSFNSSITM
                     QHGRSLDSSETYPQHAQSLDGSMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGI
                     PTAIRTTVDRPKDWYKTMFKQIHMVHKPGLYNSPYSAQSHPAAKTQTYRPLSKSHSDN
                     GTDAFKDASSPVPPPHIPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFE
                     YEPGKSSILQHERPPPLPTTPTPVPRDPGRKPISLSPYGEVTGSPSPPPRTSIPTPSA
                     CTPALSPIWPPKKALDYVQDHSSGVSNEVSLYQSSIDRSLERPTSSASMASDFRKRRK
                     SEPAVGQPRGLGDPTASRTSPGRADLPGSSSTLTKSFISSSPSSPSRAKDRESPRSYT
                     SMLTDLGRSVPRERRGTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRRIDQNWY
                     EGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQPGEIGEAVAKYNFSADTNVELSL
                     RKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVIKKNTTKGAEDYPDPPIPHSY
                     SSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKC
                     DDGWFVGTSRRTKFFGTFPGNYVKRL"
     misc_feature    703..828
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; pfam02208"
                     /db_xref="CDD:460492"
     misc_feature    1681..1845
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(1699..1701,1705..1707,1714..1716,1726..1728,
                     1780..1785,1822..1824,1828..1833)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    1906..2076
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(1924..1926,1930..1932,1939..1941,1951..1953,
                     2005..2010,2053..2055,2059..2064)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    2206..2388
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(2236..2238,2242..2244,2251..2253,2263..2265,
                     2317..2322,2365..2367,2371..2376)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
ORIGIN      
        1 acagattgtt ggctcagaga gcatctgtct gcatgctgaa gctgaggctg agaaggaggt
       61 ccctgtgtag ccacttgact gacagagaca cttgggttgg acttaatctt aaacctctgg
      121 agttcaagac cttttaaaaa gggctaaata aacaatctcc acgtgtaaaa ggccaatgac
      181 tcctacctct cttcagagca actgttgaac ccggctgcct gtaggaaaac tgaagacttt
      241 aataacaaac cctccaaggt caaaatgaac acagatagcg gtgggtgtgc tcgcaaacgt
      301 gctgccatgt ctgttacatt aacatctgtg aagagagttc aaagttctcc aaacctattg
      361 gctgcagggc gtgattctca gtcaccggac tcagcaaaag gttttagaag cgttcgacca
      421 aatctacaag aaaaaaaatc accagctcag agccagataa cgctgaatgg aaactctgga
      481 ggcactgtga gtccactgag ttactatcaa aggccgtttt ccccttctgc ctactcgcta
      541 ccaggctcat tcaattcaag cattaccatg cagcatggcc ggtcacttga ttcctcagag
      601 acataccccc agcatgcaca gtctctggac ggcagcatgg gcagctcgat accactgtac
      661 agatcctcag aggaggagaa gagagtgaca gtcatcaaag cgccgcacta cccggggatc
      721 gggccggtgg atgaatccgg aatccccacg gcaattagaa cgacagttga caggccaaag
      781 gactggtaca agaccatgtt taagcaaatc cacatggtgc acaagccggg cctgtacaac
      841 tcaccctaca gtgctcagtc acatcctgct gccaagaccc agacctacag acccctctcc
      901 aaaagccact ccgacaacgg cactgatgcc tttaaggatg cttcctctcc tgtccctccc
      961 ccacacattc ctcctccagt cccaccactt cgaccaagag atcggtcttc aacagaaaag
     1021 catgactggg accctccaga cagaaaagtg gacacaagga aatttcgttc tgagccaagg
     1081 agtatttttg aatatgaacc tgggaagtca tccattctgc agcatgaaag accaccccct
     1141 ctcccaacca ctccgacacc tgttccaagg gaccctggcc ggaagcctat ttctctgtca
     1201 ccatatggag aagtaactgg tagcccctcc cctccgccca ggaccagcat tcccacacca
     1261 agcgcgtgca ccccggctct ctctcccatc tggcctccta aaaaggctct ggactatgtt
     1321 caagatcatt cttctggtgt ttccaatgag gtctccttgt atcaatcctc tatagatagg
     1381 agcctggaaa gacccactag ttctgcaagc atggccagtg acttcaggaa aaggaggaag
     1441 agcgagcctg cggtggggca gccgaggggc ctgggggatc caactgcaag cagaactagc
     1501 ccaggtcgag cagacctccc aggatcaagc tccaccctga caaagtcctt cattagttct
     1561 tctccttctt ccccatcaag ggcaaaagac cgtgagtccc ctagaagtta cacatccatg
     1621 ctgaccgatt tggggagaag tgtaccaagg gaaagaagag gaactccaga aaaagagaaa
     1681 ttgcctgcaa aagctgttta cgattttaag gctcagacat ccaaggagct gtcatttaag
     1741 aaaggagata ctgtctacat cctcaggaga attgatcaaa actggtatga aggagagcac
     1801 cacgggagag tgggcatttt cccaatctca tacgtagaga aactcacacc tcctgagaaa
     1861 gcacagcctg ccagaccacc tccccctgcc cagcctggag aaatcggaga agctgtagcc
     1921 aaatacaatt tcagcgctga cacaaatgtg gagctatcgc tgagaaaggg agatagaatt
     1981 attcttctta aaagagttga tcaaaactgg tatgaaggta aaattccagg aaccaacaga
     2041 caaggcatct tccctgtttc ctatgtagaa gtcatcaaga agaatacaac caaaggtgct
     2101 gaggattacc ctgaccctcc aataccccac agctattcta gtgatagaat ccacagctta
     2161 agttcaaata agccacagcg tcctgtgttt actcatgaaa acattcaagg tgggggggaa
     2221 ccgtttcagg ctctgtataa ctatactcct aggaatgaag acgagctgga gctcagagaa
     2281 agtgatgtca ttgacgtgat ggaaaaatgt gatgatggat ggtttgtggg aacctcaaga
     2341 agaaccaaat tctttggtac ttttcccggg aactatgtca agaggctgtg aatcactctc
     2401 cccattattt atgctgcatt tcagcaccac atctgcataa ccttgcctga aagatctcca
     2461 caggcctcct gctgttatgc cttctggttt ccaatagaag tcacccacca tcaccatctc
     2521 catctgccac caaaccacca gcaatggaac tgccgctgcg gtggggagat tggaggattt
     2581 gcttccatgt gaaagtgcat attcctgcca tctgctctaa actttgaaaa gtcaatatgc
     2641 agcagcagaa agaaaatcat tacacttaat aacggttgag tagttgaggc aaaaaagtaa
     2701 gtgtctcaag gaggctctct tgtccactct gaaagatgtt ctcccctcag gcaaccagaa
     2761 gcttgtttat tactacttgc tggggtttgc attttcacct tcttagcttg gcagtatatt
     2821 ttcctttcac gagtttgcct agtgtcctgg tttacacgat acgacaactg tacttcagct
     2881 attgtttgcc tgcacttata tgttgtaata tgcacagtga ttccagaatc taaagcgaga
     2941 gtaggaaagt taattcgaat gagtgtgatt ttgttgaatt gaatgtgagt ttcaaatagg
     3001 agtcttctgc aggatttttt tttttttttg tactttttag aagtgcaaac aataagtgaa
     3061 taagagcctt tggtaataat caggagaata taagaggttt agctagatta cagaaaacga
     3121 ttgtgttgta aagttgcatt gctattttat attaaaatgt aataattagc atcatgaaca
     3181 atgagctctt agtgttttat ttatctgata aaagttaaat aaaagcagtg ttagtgagag
     3241 gtgcaaagaa tcattctaac atagacactt gaaagcatct gtaagcaata ttcataggta
     3301 agatttcact gtgtgtacac atacacattt gagattgtat gagaacagac aatccataag
     3361 atatgttgta catttatgga aatgtaaaag aatctcacat attattttat agaaatagag
     3421 tacttcagaa gtatcacaag tattaaggct ggttttagta aggattatga ttagtacaat
     3481 tatttttact atgataatta tttttcttct ctggaactca gaatcctggc tacatttgag
     3541 gacagggata tgttgagcct gattttccta gtgtgtgtaa aatatttcct cagaatacat
     3601 taggcacttt ttagaagcaa tgttaaatca ttcaggttaa attttctgcc ctgcagtaga
     3661 aaccttgaag atgatattgg gacctgaaag atttaatgtg cttaacagtg cctgaattac
     3721 accccgagaa ctagctttgt atttcttatg actttgcata agaactattc atatttggat
     3781 cctgagcacc atatagacaa aactttttat ggcatttctt ctgtgaacag tggttgatct
     3841 tttcacaatg catgtagact ctagaatttt gtacagatgt ttgctcattt tttgtatgga
     3901 ctatttagtt gttgagaaaa caggggaatt tcctaattcg gtctttatcc ttcctttaaa
     3961 ctaagctaaa acactttcaa cagattaccc tttacatctc ccacaaatca tcattatgcc
     4021 ttgacagtgc aattctgtaa gacagcactt ctgcaaaagt ttatgaacat aaaacatctt
     4081 agcagccaaa ctgaaatgta tataactacc gattagagag gaatttcatt agaaagaagg
     4141 taaagaaaca tctttgatta gccttgatta ctaccttgat tactgtcaag ttcacagcca
     4201 gctttatatt ttaaaggctt tgggtttgaa attaggtcaa ctgcatgcag ctttgctgat
     4261 aaatgaataa ttacctttga tgccatttat gggaaaaaat tcaatatctg ttgcctgtca
     4321 tatttaagaa aaattaatgt ttctattctc tgtatctgat tttaaaagga aaaatattca
     4381 tacttagctt ttaggtaatt gactttgaat tcttacaagc aaaggtcatt gtgtttttct
     4441 tgaataggca tctaataaat tttgcttgga agcatac
//
LOCUS       XM_032618492            4306 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X7, mRNA.
ACCESSION   XM_032618492
VERSION     XM_032618492.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4306
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4306
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746786"
     CDS             265..2220
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X7"
                     /protein_id="XP_032474383.1"
                     /db_xref="GeneID:116746786"
                     /translation="MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRDSQSPDSA
                     KGFRSVRPNLQEKKSPAQSQITLNGNSGGTVSPLSYYQRPFSPSAYSLPGSFNSSITM
                     QHGRSLDSSETYPQHAQSLDGSMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGI
                     PTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAA
                     KTQTYRPLSKSHSDNGTDAFKDASSPVPPPHIPPPVPPLRPRDRSSTEKHDWDPPDRK
                     VDTRKFRSEPRSIFEYEPGKSSILQHERPVSLYQSSIDRSLERPTSSASMASDFRKRR
                     KSEPAVGQPRGLGDPTASRTSPGRADLPGSSSTLTKSFISSSPSSPSRAKDRESPRSY
                     TSMLTDLGRSVPRERRGTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRRIDQNW
                     YEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQPGEIGEAVAKYNFSADTNVELS
                     LRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVIKKNTTKGAEDYPDPPIPHS
                     YSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEK
                     CDDGWFVGTSRRTKFFGTFPGNYVKRL"
     misc_feature    703..837
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; pfam02208"
                     /db_xref="CDD:460492"
     misc_feature    1510..1674
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(1528..1530,1534..1536,1543..1545,1555..1557,
                     1609..1614,1651..1653,1657..1662)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    1735..1905
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(1753..1755,1759..1761,1768..1770,1780..1782,
                     1834..1839,1882..1884,1888..1893)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    2035..2217
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(2065..2067,2071..2073,2080..2082,2092..2094,
                     2146..2151,2194..2196,2200..2205)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
ORIGIN      
        1 acagattgtt ggctcagaga gcatctgtct gcatgctgaa gctgaggctg agaaggaggt
       61 ccctgtgtag ccacttgact gacagagaca cttgggttgg acttaatctt aaacctctgg
      121 agttcaagac cttttaaaaa gggctaaata aacaatctcc acgtgtaaaa ggccaatgac
      181 tcctacctct cttcagagca actgttgaac ccggctgcct gtaggaaaac tgaagacttt
      241 aataacaaac cctccaaggt caaaatgaac acagatagcg gtgggtgtgc tcgcaaacgt
      301 gctgccatgt ctgttacatt aacatctgtg aagagagttc aaagttctcc aaacctattg
      361 gctgcagggc gtgattctca gtcaccggac tcagcaaaag gttttagaag cgttcgacca
      421 aatctacaag aaaaaaaatc accagctcag agccagataa cgctgaatgg aaactctgga
      481 ggcactgtga gtccactgag ttactatcaa aggccgtttt ccccttctgc ctactcgcta
      541 ccaggctcat tcaattcaag cattaccatg cagcatggcc ggtcacttga ttcctcagag
      601 acataccccc agcatgcaca gtctctggac ggcagcatgg gcagctcgat accactgtac
      661 agatcctcag aggaggagaa gagagtgaca gtcatcaaag cgccgcacta cccggggatc
      721 gggccggtgg atgaatccgg aatccccacg gcaattagaa cgacagttga caggccaaag
      781 gactggtaca agaccatgtt taagcaaatc cacatggtgc acaagccgga tgatgacaca
      841 gacatgtata atactcctta tacatataat gcaggcctgt acaactcacc ctacagtgct
      901 cagtcacatc ctgctgccaa gacccagacc tacagacccc tctccaaaag ccactccgac
      961 aacggcactg atgcctttaa ggatgcttcc tctcctgtcc ctcccccaca cattcctcct
     1021 ccagtcccac cacttcgacc aagagatcgg tcttcaacag aaaagcatga ctgggaccct
     1081 ccagacagaa aagtggacac aaggaaattt cgttctgagc caaggagtat ttttgaatat
     1141 gaacctggga agtcatccat tctgcagcat gaaagaccag tctccttgta tcaatcctct
     1201 atagatagga gcctggaaag acccactagt tctgcaagca tggccagtga cttcaggaaa
     1261 aggaggaaga gcgagcctgc ggtggggcag ccgaggggcc tgggggatcc aactgcaagc
     1321 agaactagcc caggtcgagc agacctccca ggatcaagct ccaccctgac aaagtccttc
     1381 attagttctt ctccttcttc cccatcaagg gcaaaagacc gtgagtcccc tagaagttac
     1441 acatccatgc tgaccgattt ggggagaagt gtaccaaggg aaagaagagg aactccagaa
     1501 aaagagaaat tgcctgcaaa agctgtttac gattttaagg ctcagacatc caaggagctg
     1561 tcatttaaga aaggagatac tgtctacatc ctcaggagaa ttgatcaaaa ctggtatgaa
     1621 ggagagcacc acgggagagt gggcattttc ccaatctcat acgtagagaa actcacacct
     1681 cctgagaaag cacagcctgc cagaccacct ccccctgccc agcctggaga aatcggagaa
     1741 gctgtagcca aatacaattt cagcgctgac acaaatgtgg agctatcgct gagaaaggga
     1801 gatagaatta ttcttcttaa aagagttgat caaaactggt atgaaggtaa aattccagga
     1861 accaacagac aaggcatctt ccctgtttcc tatgtagaag tcatcaagaa gaatacaacc
     1921 aaaggtgctg aggattaccc tgaccctcca ataccccaca gctattctag tgatagaatc
     1981 cacagcttaa gttcaaataa gccacagcgt cctgtgttta ctcatgaaaa cattcaaggt
     2041 gggggggaac cgtttcaggc tctgtataac tatactccta ggaatgaaga cgagctggag
     2101 ctcagagaaa gtgatgtcat tgacgtgatg gaaaaatgtg atgatggatg gtttgtggga
     2161 acctcaagaa gaaccaaatt ctttggtact tttcccggga actatgtcaa gaggctgtga
     2221 atcactctcc ccattattta tgctgcattt cagcaccaca tctgcataac cttgcctgaa
     2281 agatctccac aggcctcctg ctgttatgcc ttctggtttc caatagaagt cacccaccat
     2341 caccatctcc atctgccacc aaaccaccag caatggaact gccgctgcgg tggggagatt
     2401 ggaggatttg cttccatgtg aaagtgcata ttcctgccat ctgctctaaa ctttgaaaag
     2461 tcaatatgca gcagcagaaa gaaaatcatt acacttaata acggttgagt agttgaggca
     2521 aaaaagtaag tgtctcaagg aggctctctt gtccactctg aaagatgttc tcccctcagg
     2581 caaccagaag cttgtttatt actacttgct ggggtttgca ttttcacctt cttagcttgg
     2641 cagtatattt tcctttcacg agtttgccta gtgtcctggt ttacacgata cgacaactgt
     2701 acttcagcta ttgtttgcct gcacttatat gttgtaatat gcacagtgat tccagaatct
     2761 aaagcgagag taggaaagtt aattcgaatg agtgtgattt tgttgaattg aatgtgagtt
     2821 tcaaatagga gtcttctgca ggattttttt ttttttttgt actttttaga agtgcaaaca
     2881 ataagtgaat aagagccttt ggtaataatc aggagaatat aagaggttta gctagattac
     2941 agaaaacgat tgtgttgtaa agttgcattg ctattttata ttaaaatgta ataattagca
     3001 tcatgaacaa tgagctctta gtgttttatt tatctgataa aagttaaata aaagcagtgt
     3061 tagtgagagg tgcaaagaat cattctaaca tagacacttg aaagcatctg taagcaatat
     3121 tcataggtaa gatttcactg tgtgtacaca tacacatttg agattgtatg agaacagaca
     3181 atccataaga tatgttgtac atttatggaa atgtaaaaga atctcacata ttattttata
     3241 gaaatagagt acttcagaag tatcacaagt attaaggctg gttttagtaa ggattatgat
     3301 tagtacaatt atttttacta tgataattat ttttcttctc tggaactcag aatcctggct
     3361 acatttgagg acagggatat gttgagcctg attttcctag tgtgtgtaaa atatttcctc
     3421 agaatacatt aggcactttt tagaagcaat gttaaatcat tcaggttaaa ttttctgccc
     3481 tgcagtagaa accttgaaga tgatattggg acctgaaaga tttaatgtgc ttaacagtgc
     3541 ctgaattaca ccccgagaac tagctttgta tttcttatga ctttgcataa gaactattca
     3601 tatttggatc ctgagcacca tatagacaaa actttttatg gcatttcttc tgtgaacagt
     3661 ggttgatctt ttcacaatgc atgtagactc tagaattttg tacagatgtt tgctcatttt
     3721 ttgtatggac tatttagttg ttgagaaaac aggggaattt cctaattcgg tctttatcct
     3781 tcctttaaac taagctaaaa cactttcaac agattaccct ttacatctcc cacaaatcat
     3841 cattatgcct tgacagtgca attctgtaag acagcacttc tgcaaaagtt tatgaacata
     3901 aaacatctta gcagccaaac tgaaatgtat ataactaccg attagagagg aatttcatta
     3961 gaaagaaggt aaagaaacat ctttgattag ccttgattac taccttgatt actgtcaagt
     4021 tcacagccag ctttatattt taaaggcttt gggtttgaaa ttaggtcaac tgcatgcagc
     4081 tttgctgata aatgaataat tacctttgat gccatttatg ggaaaaaatt caatatctgt
     4141 tgcctgtcat atttaagaaa aattaatgtt tctattctct gtatctgatt ttaaaaggaa
     4201 aaatattcat acttagcttt taggtaattg actttgaatt cttacaagca aaggtcattg
     4261 tgtttttctt gaataggcat ctaataaatt ttgcttggaa gcatac
//
LOCUS       XM_032618493            4261 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X8, mRNA.
ACCESSION   XM_032618493
VERSION     XM_032618493.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4261
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4261
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746786"
     CDS             265..2175
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X8"
                     /protein_id="XP_032474384.1"
                     /db_xref="GeneID:116746786"
                     /translation="MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRDSQSPDSA
                     KGFRSVRPNLQEKKSPAQSQITLNGNSGGTVSPLSYYQRPFSPSAYSLPGSFNSSITM
                     QHGRSLDSSETYPQHAQSLDGSMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGI
                     PTAIRTTVDRPKDWYKTMFKQIHMVHKPGLYNSPYSAQSHPAAKTQTYRPLSKSHSDN
                     GTDAFKDASSPVPPPHIPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFE
                     YEPGKSSILQHERPVSLYQSSIDRSLERPTSSASMASDFRKRRKSEPAVGQPRGLGDP
                     TASRTSPGRADLPGSSSTLTKSFISSSPSSPSRAKDRESPRSYTSMLTDLGRSVPRER
                     RGTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRRIDQNWYEGEHHGRVGIFPIS
                     YVEKLTPPEKAQPARPPPPAQPGEIGEAVAKYNFSADTNVELSLRKGDRIILLKRVDQ
                     NWYEGKIPGTNRQGIFPVSYVEVIKKNTTKGAEDYPDPPIPHSYSSDRIHSLSSNKPQ
                     RPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKF
                     FGTFPGNYVKRL"
     misc_feature    703..828
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; pfam02208"
                     /db_xref="CDD:460492"
     misc_feature    1465..1629
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(1483..1485,1489..1491,1498..1500,1510..1512,
                     1564..1569,1606..1608,1612..1617)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    1690..1860
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(1708..1710,1714..1716,1723..1725,1735..1737,
                     1789..1794,1837..1839,1843..1848)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    1990..2172
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(2020..2022,2026..2028,2035..2037,2047..2049,
                     2101..2106,2149..2151,2155..2160)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
ORIGIN      
        1 acagattgtt ggctcagaga gcatctgtct gcatgctgaa gctgaggctg agaaggaggt
       61 ccctgtgtag ccacttgact gacagagaca cttgggttgg acttaatctt aaacctctgg
      121 agttcaagac cttttaaaaa gggctaaata aacaatctcc acgtgtaaaa ggccaatgac
      181 tcctacctct cttcagagca actgttgaac ccggctgcct gtaggaaaac tgaagacttt
      241 aataacaaac cctccaaggt caaaatgaac acagatagcg gtgggtgtgc tcgcaaacgt
      301 gctgccatgt ctgttacatt aacatctgtg aagagagttc aaagttctcc aaacctattg
      361 gctgcagggc gtgattctca gtcaccggac tcagcaaaag gttttagaag cgttcgacca
      421 aatctacaag aaaaaaaatc accagctcag agccagataa cgctgaatgg aaactctgga
      481 ggcactgtga gtccactgag ttactatcaa aggccgtttt ccccttctgc ctactcgcta
      541 ccaggctcat tcaattcaag cattaccatg cagcatggcc ggtcacttga ttcctcagag
      601 acataccccc agcatgcaca gtctctggac ggcagcatgg gcagctcgat accactgtac
      661 agatcctcag aggaggagaa gagagtgaca gtcatcaaag cgccgcacta cccggggatc
      721 gggccggtgg atgaatccgg aatccccacg gcaattagaa cgacagttga caggccaaag
      781 gactggtaca agaccatgtt taagcaaatc cacatggtgc acaagccggg cctgtacaac
      841 tcaccctaca gtgctcagtc acatcctgct gccaagaccc agacctacag acccctctcc
      901 aaaagccact ccgacaacgg cactgatgcc tttaaggatg cttcctctcc tgtccctccc
      961 ccacacattc ctcctccagt cccaccactt cgaccaagag atcggtcttc aacagaaaag
     1021 catgactggg accctccaga cagaaaagtg gacacaagga aatttcgttc tgagccaagg
     1081 agtatttttg aatatgaacc tgggaagtca tccattctgc agcatgaaag accagtctcc
     1141 ttgtatcaat cctctataga taggagcctg gaaagaccca ctagttctgc aagcatggcc
     1201 agtgacttca ggaaaaggag gaagagcgag cctgcggtgg ggcagccgag gggcctgggg
     1261 gatccaactg caagcagaac tagcccaggt cgagcagacc tcccaggatc aagctccacc
     1321 ctgacaaagt ccttcattag ttcttctcct tcttccccat caagggcaaa agaccgtgag
     1381 tcccctagaa gttacacatc catgctgacc gatttgggga gaagtgtacc aagggaaaga
     1441 agaggaactc cagaaaaaga gaaattgcct gcaaaagctg tttacgattt taaggctcag
     1501 acatccaagg agctgtcatt taagaaagga gatactgtct acatcctcag gagaattgat
     1561 caaaactggt atgaaggaga gcaccacggg agagtgggca ttttcccaat ctcatacgta
     1621 gagaaactca cacctcctga gaaagcacag cctgccagac cacctccccc tgcccagcct
     1681 ggagaaatcg gagaagctgt agccaaatac aatttcagcg ctgacacaaa tgtggagcta
     1741 tcgctgagaa agggagatag aattattctt cttaaaagag ttgatcaaaa ctggtatgaa
     1801 ggtaaaattc caggaaccaa cagacaaggc atcttccctg tttcctatgt agaagtcatc
     1861 aagaagaata caaccaaagg tgctgaggat taccctgacc ctccaatacc ccacagctat
     1921 tctagtgata gaatccacag cttaagttca aataagccac agcgtcctgt gtttactcat
     1981 gaaaacattc aaggtggggg ggaaccgttt caggctctgt ataactatac tcctaggaat
     2041 gaagacgagc tggagctcag agaaagtgat gtcattgacg tgatggaaaa atgtgatgat
     2101 ggatggtttg tgggaacctc aagaagaacc aaattctttg gtacttttcc cgggaactat
     2161 gtcaagaggc tgtgaatcac tctccccatt atttatgctg catttcagca ccacatctgc
     2221 ataaccttgc ctgaaagatc tccacaggcc tcctgctgtt atgccttctg gtttccaata
     2281 gaagtcaccc accatcacca tctccatctg ccaccaaacc accagcaatg gaactgccgc
     2341 tgcggtgggg agattggagg atttgcttcc atgtgaaagt gcatattcct gccatctgct
     2401 ctaaactttg aaaagtcaat atgcagcagc agaaagaaaa tcattacact taataacggt
     2461 tgagtagttg aggcaaaaaa gtaagtgtct caaggaggct ctcttgtcca ctctgaaaga
     2521 tgttctcccc tcaggcaacc agaagcttgt ttattactac ttgctggggt ttgcattttc
     2581 accttcttag cttggcagta tattttcctt tcacgagttt gcctagtgtc ctggtttaca
     2641 cgatacgaca actgtacttc agctattgtt tgcctgcact tatatgttgt aatatgcaca
     2701 gtgattccag aatctaaagc gagagtagga aagttaattc gaatgagtgt gattttgttg
     2761 aattgaatgt gagtttcaaa taggagtctt ctgcaggatt tttttttttt tttgtacttt
     2821 ttagaagtgc aaacaataag tgaataagag cctttggtaa taatcaggag aatataagag
     2881 gtttagctag attacagaaa acgattgtgt tgtaaagttg cattgctatt ttatattaaa
     2941 atgtaataat tagcatcatg aacaatgagc tcttagtgtt ttatttatct gataaaagtt
     3001 aaataaaagc agtgttagtg agaggtgcaa agaatcattc taacatagac acttgaaagc
     3061 atctgtaagc aatattcata ggtaagattt cactgtgtgt acacatacac atttgagatt
     3121 gtatgagaac agacaatcca taagatatgt tgtacattta tggaaatgta aaagaatctc
     3181 acatattatt ttatagaaat agagtacttc agaagtatca caagtattaa ggctggtttt
     3241 agtaaggatt atgattagta caattatttt tactatgata attatttttc ttctctggaa
     3301 ctcagaatcc tggctacatt tgaggacagg gatatgttga gcctgatttt cctagtgtgt
     3361 gtaaaatatt tcctcagaat acattaggca ctttttagaa gcaatgttaa atcattcagg
     3421 ttaaattttc tgccctgcag tagaaacctt gaagatgata ttgggacctg aaagatttaa
     3481 tgtgcttaac agtgcctgaa ttacaccccg agaactagct ttgtatttct tatgactttg
     3541 cataagaact attcatattt ggatcctgag caccatatag acaaaacttt ttatggcatt
     3601 tcttctgtga acagtggttg atcttttcac aatgcatgta gactctagaa ttttgtacag
     3661 atgtttgctc attttttgta tggactattt agttgttgag aaaacagggg aatttcctaa
     3721 ttcggtcttt atccttcctt taaactaagc taaaacactt tcaacagatt accctttaca
     3781 tctcccacaa atcatcatta tgccttgaca gtgcaattct gtaagacagc acttctgcaa
     3841 aagtttatga acataaaaca tcttagcagc caaactgaaa tgtatataac taccgattag
     3901 agaggaattt cattagaaag aaggtaaaga aacatctttg attagccttg attactacct
     3961 tgattactgt caagttcaca gccagcttta tattttaaag gctttgggtt tgaaattagg
     4021 tcaactgcat gcagctttgc tgataaatga ataattacct ttgatgccat ttatgggaaa
     4081 aaattcaata tctgttgcct gtcatattta agaaaaatta atgtttctat tctctgtatc
     4141 tgattttaaa aggaaaaata ttcatactta gcttttaggt aattgacttt gaattcttac
     4201 aagcaaaggt cattgtgttt ttcttgaata ggcatctaat aaattttgct tggaagcata
     4261 c
//
LOCUS       XM_032618494            4161 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sorbin and SH3 domain containing 2
            (SORBS2), transcript variant X9, mRNA.
ACCESSION   XM_032618494
VERSION     XM_032618494.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4161
                     /gene="SORBS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746786"
     CDS             423..2075
                     /gene="SORBS2"
                     /codon_start=1
                     /product="sorbin and SH3 domain-containing protein 2
                     isoform X9"
                     /protein_id="XP_032474385.1"
                     /db_xref="GeneID:116746786"
                     /translation="MQHGRSLDSSETYPQHAQSLDGSMGSSIPLYRSSEEEKRVTVIK
                     APHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNA
                     GLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHIPPPVPPLRPRD
                     RSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPVSLYQSSIDRSLER
                     PTSSASMASDFRKRRKSEPAVGQPRGLGDPTASRTSPGRADLPGSSSTLTKSFISSSP
                     SSPSRAKDRESPRSYTSMLTDLGRSVPRERRGTPEKEKLPAKAVYDFKAQTSKELSFK
                     KGDTVYILRRIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQPGEIGEA
                     VAKYNFSADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVIKKNT
                     TKGAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNED
                     ELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL"
     misc_feature    558..692
                     /gene="SORBS2"
                     /note="Sorbin homologous domain; Region: Sorb; pfam02208"
                     /db_xref="CDD:460492"
     misc_feature    1365..1529
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(1383..1385,1389..1391,1398..1400,1410..1412,
                     1464..1469,1506..1508,1512..1517)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    1590..1760
                     /gene="SORBS2"
                     /note="Second Src Homology 3 domain of Sorbin and SH3
                     domain containing 2 (Sorbs2), also called Arg-binding
                     protein 2 (ArgBP2); Region: SH3_Sorbs2_2; cd11923"
                     /db_xref="CDD:212856"
     misc_feature    order(1608..1610,1614..1616,1623..1625,1635..1637,
                     1689..1694,1737..1739,1743..1748)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212856"
     misc_feature    1890..2072
                     /gene="SORBS2"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:473055"
     misc_feature    order(1920..1922,1926..1928,1935..1937,1947..1949,
                     2001..2006,2049..2051,2055..2060)
                     /gene="SORBS2"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
ORIGIN      
        1 gctctcagaa cagtagcacc acccagcagc tgggattctt tccgtctctc atttgccttc
       61 tctcttgcct tttttttccc ttcagacact tgggttggac ttaatcttaa acctctggag
      121 ttcaagacct tttaaaaagg gctaaataaa caatctccac gtgtaaaagg ccaatgactc
      181 ctacctctct tcagagcaac tgttgaaccc ggctgcctgt agggcgtgat tctcagtcac
      241 cggactcagc aaaaggtttt agaagcgttc gaccaaatct acaagaaaaa aaatcaccag
      301 ctcagagcca gataacgctg aatggaaact ctggaggcac tgtgagtcca ctgagttact
      361 atcaaaggcc gttttcccct tctgcctact cgctaccagg ctcattcaat tcaagcatta
      421 ccatgcagca tggccggtca cttgattcct cagagacata cccccagcat gcacagtctc
      481 tggacggcag catgggcagc tcgataccac tgtacagatc ctcagaggag gagaagagag
      541 tgacagtcat caaagcgccg cactacccgg ggatcgggcc ggtggatgaa tccggaatcc
      601 ccacggcaat tagaacgaca gttgacaggc caaaggactg gtacaagacc atgtttaagc
      661 aaatccacat ggtgcacaag ccggatgatg acacagacat gtataatact ccttatacat
      721 ataatgcagg cctgtacaac tcaccctaca gtgctcagtc acatcctgct gccaagaccc
      781 agacctacag acccctctcc aaaagccact ccgacaacgg cactgatgcc tttaaggatg
      841 cttcctctcc tgtccctccc ccacacattc ctcctccagt cccaccactt cgaccaagag
      901 atcggtcttc aacagaaaag catgactggg accctccaga cagaaaagtg gacacaagga
      961 aatttcgttc tgagccaagg agtatttttg aatatgaacc tgggaagtca tccattctgc
     1021 agcatgaaag accagtctcc ttgtatcaat cctctataga taggagcctg gaaagaccca
     1081 ctagttctgc aagcatggcc agtgacttca ggaaaaggag gaagagcgag cctgcggtgg
     1141 ggcagccgag gggcctgggg gatccaactg caagcagaac tagcccaggt cgagcagacc
     1201 tcccaggatc aagctccacc ctgacaaagt ccttcattag ttcttctcct tcttccccat
     1261 caagggcaaa agaccgtgag tcccctagaa gttacacatc catgctgacc gatttgggga
     1321 gaagtgtacc aagggaaaga agaggaactc cagaaaaaga gaaattgcct gcaaaagctg
     1381 tttacgattt taaggctcag acatccaagg agctgtcatt taagaaagga gatactgtct
     1441 acatcctcag gagaattgat caaaactggt atgaaggaga gcaccacggg agagtgggca
     1501 ttttcccaat ctcatacgta gagaaactca cacctcctga gaaagcacag cctgccagac
     1561 cacctccccc tgcccagcct ggagaaatcg gagaagctgt agccaaatac aatttcagcg
     1621 ctgacacaaa tgtggagcta tcgctgagaa agggagatag aattattctt cttaaaagag
     1681 ttgatcaaaa ctggtatgaa ggtaaaattc caggaaccaa cagacaaggc atcttccctg
     1741 tttcctatgt agaagtcatc aagaagaata caaccaaagg tgctgaggat taccctgacc
     1801 ctccaatacc ccacagctat tctagtgata gaatccacag cttaagttca aataagccac
     1861 agcgtcctgt gtttactcat gaaaacattc aaggtggggg ggaaccgttt caggctctgt
     1921 ataactatac tcctaggaat gaagacgagc tggagctcag agaaagtgat gtcattgacg
     1981 tgatggaaaa atgtgatgat ggatggtttg tgggaacctc aagaagaacc aaattctttg
     2041 gtacttttcc cgggaactat gtcaagaggc tgtgaatcac tctccccatt atttatgctg
     2101 catttcagca ccacatctgc ataaccttgc ctgaaagatc tccacaggcc tcctgctgtt
     2161 atgccttctg gtttccaata gaagtcaccc accatcacca tctccatctg ccaccaaacc
     2221 accagcaatg gaactgccgc tgcggtgggg agattggagg atttgcttcc atgtgaaagt
     2281 gcatattcct gccatctgct ctaaactttg aaaagtcaat atgcagcagc agaaagaaaa
     2341 tcattacact taataacggt tgagtagttg aggcaaaaaa gtaagtgtct caaggaggct
     2401 ctcttgtcca ctctgaaaga tgttctcccc tcaggcaacc agaagcttgt ttattactac
     2461 ttgctggggt ttgcattttc accttcttag cttggcagta tattttcctt tcacgagttt
     2521 gcctagtgtc ctggtttaca cgatacgaca actgtacttc agctattgtt tgcctgcact
     2581 tatatgttgt aatatgcaca gtgattccag aatctaaagc gagagtagga aagttaattc
     2641 gaatgagtgt gattttgttg aattgaatgt gagtttcaaa taggagtctt ctgcaggatt
     2701 tttttttttt tttgtacttt ttagaagtgc aaacaataag tgaataagag cctttggtaa
     2761 taatcaggag aatataagag gtttagctag attacagaaa acgattgtgt tgtaaagttg
     2821 cattgctatt ttatattaaa atgtaataat tagcatcatg aacaatgagc tcttagtgtt
     2881 ttatttatct gataaaagtt aaataaaagc agtgttagtg agaggtgcaa agaatcattc
     2941 taacatagac acttgaaagc atctgtaagc aatattcata ggtaagattt cactgtgtgt
     3001 acacatacac atttgagatt gtatgagaac agacaatcca taagatatgt tgtacattta
     3061 tggaaatgta aaagaatctc acatattatt ttatagaaat agagtacttc agaagtatca
     3121 caagtattaa ggctggtttt agtaaggatt atgattagta caattatttt tactatgata
     3181 attatttttc ttctctggaa ctcagaatcc tggctacatt tgaggacagg gatatgttga
     3241 gcctgatttt cctagtgtgt gtaaaatatt tcctcagaat acattaggca ctttttagaa
     3301 gcaatgttaa atcattcagg ttaaattttc tgccctgcag tagaaacctt gaagatgata
     3361 ttgggacctg aaagatttaa tgtgcttaac agtgcctgaa ttacaccccg agaactagct
     3421 ttgtatttct tatgactttg cataagaact attcatattt ggatcctgag caccatatag
     3481 acaaaacttt ttatggcatt tcttctgtga acagtggttg atcttttcac aatgcatgta
     3541 gactctagaa ttttgtacag atgtttgctc attttttgta tggactattt agttgttgag
     3601 aaaacagggg aatttcctaa ttcggtcttt atccttcctt taaactaagc taaaacactt
     3661 tcaacagatt accctttaca tctcccacaa atcatcatta tgccttgaca gtgcaattct
     3721 gtaagacagc acttctgcaa aagtttatga acataaaaca tcttagcagc caaactgaaa
     3781 tgtatataac taccgattag agaggaattt cattagaaag aaggtaaaga aacatctttg
     3841 attagccttg attactacct tgattactgt caagttcaca gccagcttta tattttaaag
     3901 gctttgggtt tgaaattagg tcaactgcat gcagctttgc tgataaatga ataattacct
     3961 ttgatgccat ttatgggaaa aaattcaata tctgttgcct gtcatattta agaaaaatta
     4021 atgtttctat tctctgtatc tgattttaaa aggaaaaata ttcatactta gcttttaggt
     4081 aattgacttt gaattcttac aagcaaaggt cattgtgttt ttcttgaata ggcatctaat
     4141 aaattttgct tggaagcata c
//
LOCUS       XM_032618495            1485 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cholinergic receptor nicotinic alpha 6
            subunit (CHRNA6), transcript variant X1, mRNA.
ACCESSION   XM_032618495
VERSION     XM_032618495.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1485
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1485
                     /gene="CHRNA6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 Proteins, and 10% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746788"
     CDS             1..1485
                     /gene="CHRNA6"
                     /codon_start=1
                     /product="neuronal acetylcholine receptor subunit alpha-6
                     isoform X1"
                     /protein_id="XP_032474386.1"
                     /db_xref="GeneID:116746788"
                     /translation="MLPHEGQGFLHFGLCLWWYVFTLCFRGCAGCASEERLFHKLFAH
                     YNQFIRPVENVSDPVTVHFEVAITQLADVDEVNQIMETNLWLRHMWNDYKLRWDPVEY
                     DGIETLRVPAEKIWKPDIVLYNNAVGNFQVKGKTKALLKYDGMITWTPPAIFKSSCPM
                     DITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMDEFWEDSEWEIVDASGYKHDI
                     KYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFVSFLTVLVFYLPSDCGEKVTLCI
                     SVLLSLTVFLLVITETIPSTSLVIPLVGKYLLFTMIFITLSIVVTVFVLNTHYRAPTT
                     HTMPTWVKTVFLRLLPQILMMRRPLDKRKGTRYDKNPEGFSGRPAKVKFDRCREPKLF
                     QECCHCRKSSEIATSKRRLGHQPLQWTTENLEPSPEVEAVIDSVQFIAENMKNQNETK
                     EVEDDWKYVAMVVDRVFLWVFIIICVFGTAGLFLQPLLGNTGHS"
     misc_feature    100..1452
                     /gene="CHRNA6"
                     /note="Cation transporter family protein; Region: LIC;
                     cl42365"
                     /db_xref="CDD:455710"
     misc_feature    100..720
                     /gene="CHRNA6"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); Region: LGIC_ECD;
                     cl28912"
                     /db_xref="CDD:475126"
     misc_feature    order(205..207,211..213,229..234,253..255,319..321,
                     325..327,352..357,361..363,367..372,403..411,415..417,
                     445..447,451..453,457..459,469..471,535..537,715..717)
                     /gene="CHRNA6"
                     /note="pentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349817"
ORIGIN      
        1 atgctgcccc acgagggaca gggattcctt cactttgggc tgtgtctctg gtggtatgta
       61 ttcacacttt gcttcagagg atgtgcaggc tgtgcgtccg aggagaggct ctttcacaaa
      121 ctgtttgctc attataacca gttcatcagg cccgtggaaa acgtttctga cccagtcact
      181 gtgcattttg aagtggccat cacgcagctg gccgacgtgg atgaagtaaa ccagatcatg
      241 gaaaccaatc tgtggctacg tcacatgtgg aatgattata aattgcgctg ggacccagtg
      301 gaatacgatg gcattgagac tcttcgcgtt cctgcggaga agatctggaa gcctgacatt
      361 gttctctaca acaatgctgt cggcaacttc caagtcaaag gcaagacaaa agctcttctt
      421 aaatatgatg gcatgataac ctggactcca ccagctattt ttaagagctc ctgtcctatg
      481 gatatcactt ttttcccttt cgatcatcaa aattgttccc tgaaatttgg ttcctggacc
      541 tatgacaaag ctgaaattga tcttctaatc attggctcta aagtggacat ggatgaattt
      601 tgggaagaca gtgaatggga aattgtcgat gcttctggct acaagcatga cataaaatac
      661 aactgttgtg aagagatata cacagacata acctattctt tttacattag aaggttgccg
      721 atgttttaca ccattaatct gatcatcccc tgtctctttg tttcatttct aactgtgttg
      781 gttttctacc tcccttctga ctgtggtgaa aaagtgacgc tttgcatttc agttctgctt
      841 tccctgacag tgtttttgct ggtgatcaca gaaaccatcc catctacgtc tctcgtgatc
      901 cccttggtgg gcaagtacct gctgttcacc atgatcttca tcaccttgtc catcgtggtg
      961 acggtgtttg tgttgaacac ccactatcgc gccccgacca cacataccat gcccacgtgg
     1021 gtgaagacag tcttcctccg gctgttaccc cagatcctga tgatgaggag gcctctggac
     1081 aagaggaagg ggacaaggta tgacaaaaac cccgaaggct tctctggtag gccagccaaa
     1141 gtcaagttcg atcgttgcag ggagcccaaa ctttttcaag aatgctgcca ctgtcgtaag
     1201 tccagtgaga tcgccaccag caagagacgg ttaggtcatc agcctttaca atggacgact
     1261 gaaaatttgg agccctcacc tgaagtcgaa gctgtaattg atagtgttca gttcatagca
     1321 gaaaacatga agaaccaaaa tgaaacaaag gaggtagagg acgactggaa atacgtggcc
     1381 atggtagtgg acagggtgtt cctgtgggtg tttataatca tctgcgtgtt tggaactgcg
     1441 gggctgtttc tccagccact cctggggaac acaggacatt cgtaa
//
LOCUS       XM_032618496            1440 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cholinergic receptor nicotinic alpha 6
            subunit (CHRNA6), transcript variant X2, mRNA.
ACCESSION   XM_032618496
VERSION     XM_032618496.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1440
                     /gene="CHRNA6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 10% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746788"
     CDS             1..1440
                     /gene="CHRNA6"
                     /codon_start=1
                     /product="neuronal acetylcholine receptor subunit alpha-6
                     isoform X2"
                     /protein_id="XP_032474387.1"
                     /db_xref="GeneID:116746788"
                     /translation="MLPHEGQGFLHFGLCLWWYVFTLCFRGCAGCASEERLFHKLFAH
                     YNQFIRPVENVSDPVTVHFEVAITQLADVMWNDYKLRWDPVEYDGIETLRVPAEKIWK
                     PDIVLYNNAVGNFQVKGKTKALLKYDGMITWTPPAIFKSSCPMDITFFPFDHQNCSLK
                     FGSWTYDKAEIDLLIIGSKVDMDEFWEDSEWEIVDASGYKHDIKYNCCEEIYTDITYS
                     FYIRRLPMFYTINLIIPCLFVSFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITE
                     TIPSTSLVIPLVGKYLLFTMIFITLSIVVTVFVLNTHYRAPTTHTMPTWVKTVFLRLL
                     PQILMMRRPLDKRKGTRYDKNPEGFSGRPAKVKFDRCREPKLFQECCHCRKSSEIATS
                     KRRLGHQPLQWTTENLEPSPEVEAVIDSVQFIAENMKNQNETKEVEDDWKYVAMVVDR
                     VFLWVFIIICVFGTAGLFLQPLLGNTGHS"
     misc_feature    100..1407
                     /gene="CHRNA6"
                     /note="Cation transporter family protein; Region: LIC;
                     cl42365"
                     /db_xref="CDD:455710"
     misc_feature    100..675
                     /gene="CHRNA6"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); Region: LGIC_ECD;
                     cl28912"
                     /db_xref="CDD:475126"
     misc_feature    order(205..207,211..213,274..276,280..282,307..312,
                     316..318,322..327,358..366,370..372,400..402,406..408,
                     412..414,424..426,490..492,670..672)
                     /gene="CHRNA6"
                     /note="pentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349817"
ORIGIN      
        1 atgctgcccc acgagggaca gggattcctt cactttgggc tgtgtctctg gtggtatgta
       61 ttcacacttt gcttcagagg atgtgcaggc tgtgcgtccg aggagaggct ctttcacaaa
      121 ctgtttgctc attataacca gttcatcagg cccgtggaaa acgtttctga cccagtcact
      181 gtgcattttg aagtggccat cacgcagctg gccgacgtga tgtggaatga ttataaattg
      241 cgctgggacc cagtggaata cgatggcatt gagactcttc gcgttcctgc ggagaagatc
      301 tggaagcctg acattgttct ctacaacaat gctgtcggca acttccaagt caaaggcaag
      361 acaaaagctc ttcttaaata tgatggcatg ataacctgga ctccaccagc tatttttaag
      421 agctcctgtc ctatggatat cacttttttc cctttcgatc atcaaaattg ttccctgaaa
      481 tttggttcct ggacctatga caaagctgaa attgatcttc taatcattgg ctctaaagtg
      541 gacatggatg aattttggga agacagtgaa tgggaaattg tcgatgcttc tggctacaag
      601 catgacataa aatacaactg ttgtgaagag atatacacag acataaccta ttctttttac
      661 attagaaggt tgccgatgtt ttacaccatt aatctgatca tcccctgtct ctttgtttca
      721 tttctaactg tgttggtttt ctacctccct tctgactgtg gtgaaaaagt gacgctttgc
      781 atttcagttc tgctttccct gacagtgttt ttgctggtga tcacagaaac catcccatct
      841 acgtctctcg tgatcccctt ggtgggcaag tacctgctgt tcaccatgat cttcatcacc
      901 ttgtccatcg tggtgacggt gtttgtgttg aacacccact atcgcgcccc gaccacacat
      961 accatgccca cgtgggtgaa gacagtcttc ctccggctgt taccccagat cctgatgatg
     1021 aggaggcctc tggacaagag gaaggggaca aggtatgaca aaaaccccga aggcttctct
     1081 ggtaggccag ccaaagtcaa gttcgatcgt tgcagggagc ccaaactttt tcaagaatgc
     1141 tgccactgtc gtaagtccag tgagatcgcc accagcaaga gacggttagg tcatcagcct
     1201 ttacaatgga cgactgaaaa tttggagccc tcacctgaag tcgaagctgt aattgatagt
     1261 gttcagttca tagcagaaaa catgaagaac caaaatgaaa caaaggaggt agaggacgac
     1321 tggaaatacg tggccatggt agtggacagg gtgttcctgt gggtgtttat aatcatctgc
     1381 gtgtttggaa ctgcggggct gtttctccag ccactcctgg ggaacacagg acattcgtaa
//
LOCUS       XM_032618497            5156 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ER lipid raft associated 2 (ERLIN2),
            transcript variant X1, mRNA.
ACCESSION   XM_032618497
VERSION     XM_032618497.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5156
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5156
                     /gene="ERLIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 21 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746790"
     CDS             129..1148
                     /gene="ERLIN2"
                     /codon_start=1
                     /product="erlin-2 isoform X1"
                     /protein_id="XP_032474388.1"
                     /db_xref="GeneID:116746790"
                     /translation="MAQLGAVLALAASFLCASLFSAVHKIEEGHIGVYYRGGALLTST
                     SGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYD
                     IVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMA
                     PGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEA
                     EKVAQVAEITYGQKVMEKETEKRISEIEDAAFLAREKAKADAECYTAMKIAEANKLKL
                     TPEYLQLMKYKAIASNSKIYFGKDIPDMFVDSAGSLGKHLEALADKPSFGLEEEASEA
                     DAEEN"
     misc_feature    174..1052
                     /gene="ERLIN2"
                     /note="Uncharacterized family; SPFH (stomatin, prohibitin,
                     flotillin, and HflK/C) superfamily; Region: SPFH_like_u3;
                     cd03406"
                     /db_xref="CDD:259804"
ORIGIN      
        1 atggcgtcat cgaagcgacg ggcccggaag gaagtagcgt gcggagaggt gtggcggttt
       61 ctgcggttgc acaggggttc ggacgagtac ggagcgcctg gagggacagc ctgggtgaac
      121 gctcactgat ggctcagttg ggagcagttt tggctctggc tgccagtttc ttgtgtgcat
      181 ctctcttctc agctgtgcac aagatagaag agggacatat tggggtgtat tacagaggcg
      241 gtgccctgct gacttccacc agcggccctg gcttccatct catgctccca ttcatcacat
      301 cctataagtc tgtgcagacc acactccaga cagatgaggt gaagaacgta ccttgtggga
      361 caagcggtgg cgtgatgatc tacttcgaca gaatcgaggt ggtgaacttc ctggtcccac
      421 acgcagtgta tgatatagtg aagaactaca ctgccgacta cgacaaggcg ctcatcttca
      481 acaagatcca ccacgagctg aaccagttct gcagtgtcca cacgcttcag gaggtctaca
      541 tcgagctctt cgatcagatt gatgaaaatc tcaaactggc tttgcaacag gacctgacct
      601 ccatggcccc cgggctcgtc atccaagctg tgcgggtgac aaagcccaac atacctgaag
      661 ccatccgcag gaactacgag ctgatggaaa gcgagaagac gaagcttctg attgcagccc
      721 agaagcagaa ggtggtggag aaggaagccg agacagagcg gaagaaggcc ctcattgagg
      781 cagagaaagt ggctcaggtg gcagaaatca cctatgggca gaaggtgatg gagaaggaga
      841 cggagaagag gatttcggaa atcgaagatg ctgcgtttct ggcccgggag aaggccaagg
      901 cggacgccga gtgctacact gccatgaaaa tagccgaagc aaataagctg aagctgaccc
      961 ctgagtattt gcagctgatg aagtacaagg ccatcgcttc caacagcaag atttactttg
     1021 gcaaagacat ccctgacatg ttcgtggact ctgcgggcag cctgggcaag cacctggagg
     1081 cgctagctga caagccgagc tttggcttag aagaggaggc ctcggaggca gacgcggagg
     1141 agaactgaat gtttctgtcc ccagccgcac gtgaccctca aagagatctt tattttttaa
     1201 tgatgaacca gccctccctt ccgcactacc ttctttgact ctcttccacg tactgtggtg
     1261 aaaaaagaag aaacggactt aaacctattc cccttcctgg gaagcggggg tagggactga
     1321 tgaattgggg ttttcttcag gtaagtaggt tacgtggctt ctgttaagat ttggaaacca
     1381 tgggctagaa ctttgagctc caggcattga tcttcgccct tttgaagctg gcttaattag
     1441 ggatgctatt aataaggagt gggagaaatg cagggtgtcg cctccgatcg gactgccctt
     1501 atttggggaa aggcagtcca gtgttctcaa cctgcctcca aggtgggaga tgcccgtggg
     1561 tgaggcccag ctaccgagca gatacgtgct tgtaagtttg ccagcagagc tgtggagaaa
     1621 cggctgcagt ggatgttggc tttcccggag ctcctggccg tgagcccgtg ggttactgcc
     1681 gaggcccgct ctctggagcc ctggtaagga agagctggtg ctataggttt tgcaggcttt
     1741 tctacacacc accctccttg ccccagggct gaaagcgtgg tggcttccga ccacatttcc
     1801 agggtcaggg tttggccgcc accacacaat tctttttaaa acttttcacc tattctgtga
     1861 tttggttttt ttctcctctt aacctgttcg ttggttccac tcagcatcaa gaagacagga
     1921 atgaagaact caggtgtctt caaagctgct gaagtgggac cgtgctatct gttagccact
     1981 gtggtacctg cttggcaaac tgtgcgcgtt ccttgagatc aagtgtcttt tcattgctgt
     2041 ggggatccta cggttgaaga cctcctctgg gggaggaaga agggctcgtc caaaagattc
     2101 cccaatctca gtgcctgtga cttgtgctgg ggtctgtctg atgtagtgat aagggggagc
     2161 ccgttcgcta agcggccggt gtctttaaat ccagggctcc aggggtcaca ccgagtgtta
     2221 aatctccaga gacagctgtg tgggtacgag ttcatgccct agtccctggg tcagaaggac
     2281 tgcatcagaa tccactcaaa tgttttttca ttactaattg ggagatttgg gtggggggaa
     2341 cacaagcatg aaaaaaaggt tttcttgtgt cctgaagttg gagttggggg caggagtgtg
     2401 taccaggtcg ctaagtggag ggcagctgtc tggagtgaac ttgcaagcct gttggtatcg
     2461 tccacgacaa gccctggctg aggatttgtt attagctgcc cccctccaag aagaactccc
     2521 actgtacccc tcttttctcg gtgaaactac aaatgatact ttctggcaca gatttccatc
     2581 tcatttttga tcccacaccc agacttctga ttaaccgaat ggccccaaaa gtcgggctac
     2641 cttgcttcta agtagcacca ggctcttcgg gagttgcggg agcattcagc cggcctagga
     2701 atacacacag ggttaatccc tcttaattta aatgttgccc ttctctgttc taatttgtgg
     2761 gacttagaat tctcaattct tagaattctc acccattcct ggtcacactt tgtgcaggca
     2821 gccaaatgtt cctgggagtg atggatttta acgtgctcag aaggcctcgc agaaggcagt
     2881 tagtctaaga ccaacataag gtatccatca ttaagataca ctcacccttc tcccacttca
     2941 gtgccattaa tcacttgtta ggagtaccat gtcacatcca gcatccctga tttacatatt
     3001 tgtcggctcc tctgctctga gaccggctgc ctaagcctca gaaaacacta cttctctcca
     3061 gtggaatacg cagcaaggac atctcagcct ctctgagtag caggcttgct cagattctct
     3121 aatactagca tcctgtgatg gcttgtccct tgctagatca caaaggagcc tcggtgacgt
     3181 cctgctacac ctgcccccct tcaatgtcaa tgtcacttct tctttaagca aaaaatgtaa
     3241 ctgttgtagt acccattcgt ttaagtccaa tgttgtctga acctgcctga ataggaaaat
     3301 catggaaatg ggttgttttc ttagcttggg acaactaacc agtctgtctg tgtgacttcg
     3361 tttctgtaac acttactaga aaaccagatc tgaaaacatt tgaatgctaa acatgtaaac
     3421 tgtgacagcc tgcaattttg taggcagtaa agtcatggct gctattgata aatggaacct
     3481 ctatcaaaat aaggaactgt ttataaaagt cagtttttgt aggactttcc aaggaaaaat
     3541 caccttggtt gaatgtttct cacccattaa actttgcaga agtgatctat attcagtact
     3601 gtttttaatc acctttttta atatcaggac agagtatttg aaaggaagcc acagtttgtt
     3661 aatttttata tgactaaaat aaattcggag ggatctgcga tcatattaag ttgagagagg
     3721 gaaaaaaatc actgaaagaa ttttagcaat atagtcatcc ctcggcctct gcaggggact
     3781 ggttccagga cactcccccc gaccccatac caaaatccgt ggatgctcaa gtcccttata
     3841 taaaatggcc tagtagagct gcctctgtat ccgcgggttc cacatccaca gatacaaagg
     3901 gccgactata tcgatccgaa aatagtagat gttttataaa tgatctgttg cagtttctat
     3961 gagtctctat ctttcaacac agataacttc accatttata aacagtgaaa gtaagagctt
     4021 catatttact gactacctat ttaagtttga tcgaggataa gttgtatcct gactaggggt
     4081 cactctgcct ctatggactt aaccactgct tctttagttc tattcagtag ggttctagcc
     4141 actatttctg gtgtttcctt ttaaaagagg taatagccaa tcattttgtg tttgtatttc
     4201 cattcctctc tatttctgct tctgtgcaag ctggtgattg aacagtcaaa actaactcta
     4261 cttgcaaaga gccccgagga ctgaatgacc ccctttgaaa ctgagaaatg agtgttgtta
     4321 tattaatcac tccacaaatg atatgctgga ttaattgcct tgggctgata gatggaagaa
     4381 ctgttttaga caactctaaa ggtgtgattt gatgtcttcg ttttattttc agtcttgcta
     4441 aataaaatga gtctttgtat ttttttatta cagtgaaatt tagcaatagc taatattaga
     4501 ttaggtgata taaagagata aaacatttct gcctagtgag ttaagtcgag ccccaaaaat
     4561 atattcagat gaatttctat tcccattatc gatgtagaaa taataaacag cttatttgtg
     4621 aaaatggcat aattcttggt aggtgctacg gagatttatc gtaaaatact ccatacactg
     4681 ctgcaattct gctccaaaag agcagaggta ctttctgctg acccaaaata tattttgata
     4741 tcaattcggt aagaaagtcg cagtctctgt ctgggaaata tgcccagcct agagttgccg
     4801 aataaaatac aggatgccca gttaaatgtg attttcatat aaataacgaa taatttttag
     4861 tataagtatg tcccaaatat tgcatgagac atactaaaaa agtcttcgtt gtttatatga
     4921 aattcacgtt taactgagca tcctgaacag ttgtcccgtg aacaacacgg gtccactttt
     4981 acacggattt ttttcaataa acacatacta caggactatt caatctgtgg ttggttgcct
     5041 tcgcaggggc agaaccacag atacgagggc ctgctataaa gttataggca gattttcgtc
     5101 gatgccagcc ggggtcagta cctctaacac ctgcattgtt caaggatcaa ctgtat
//
LOCUS       XR_004347874            4592 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ER lipid raft associated 2 (ERLIN2),
            transcript variant X2, misc_RNA.
ACCESSION   XR_004347874
VERSION     XR_004347874.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4592
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4592
                     /gene="ERLIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 20 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746790"
     misc_RNA        1..4592
                     /gene="ERLIN2"
                     /product="ER lipid raft associated 2, transcript variant
                     X2"
                     /db_xref="GeneID:116746790"
ORIGIN      
        1 atggcgtcat cgaagcgacg ggcccggaag gaagtagcgt gcggagaggt gtggcggttt
       61 ctgcggttgc acaggggttc ggacgagtac ggagcgcctg gagggacagc ctgggtgaac
      121 gctcactgat ggctcagttg ggagcagttt tggctctggc tgccagtttc ttgtgtgcat
      181 ctctcttctc agctgtgcac aagatagaag agggacatat tggggtgtat tacagaggcg
      241 gtgccctgct gacttccacc agcggccctg gcttccatct catgctccca ttcatcacat
      301 cctataagtc tgtgcagacc acactccaga cagatgaggt gaagaacgta ccttgtggga
      361 caagcggtgg cgtgatgatc tacttcgaca gaatcgaggt ggtgaacttc ctggtcccac
      421 acgcagtgta tgatatagtg aagaactaca ctgccgacta cgacaaggcg ctcatcttca
      481 acaagatcca ccacgagctg aaccagttct gcagtgtcca cacgcttcag gaggtctaca
      541 tcgagctctt cgatcagatt gatgaaaatc tcaaactggc tttgcaacag gacctgacct
      601 ccatggcccc cgggctcgtc atccaagctg tgcgggtgac aaagcccaac atacctgaag
      661 ccatccgcag gaactacgag ctgatggaaa gcgagaagac gaagcttctg attgcagccc
      721 agaagcagaa ggtggtggag aaggaagccg agacagagcg gaagaaggcc ctcattgagg
      781 cagagaaagt ggctcaggtg gcagaaatca cctatgggca gaaggtgatg gagaaggaga
      841 cggagaagag gatttcggaa atcgaagatg ctgcgtttct ggcccgggag aaggccaagg
      901 cggacgccga gtgctacact gccatgaaaa tagccgaagc aaataagctg aagctgaccc
      961 ctgagtattt gcagctgatg aagtacaagg ccatcgcttc caacagcaag atttactttg
     1021 gcaaagacat ccctgacatg ttcgtggact ctgcgggcag cctgggcaag cacctggagg
     1081 cgctagctga caagccgagc tttggcttag aagaggaggc ctcggaggca gacgcggagg
     1141 agaactgaat gtttctgtcc ccagccgcac gtgaccctca aagagatctt tattttttaa
     1201 tgatgaacca gccctccctt ccgcactacc ttctttgact ctcttccacg tactgtggtg
     1261 aaaaaagaag aaacggactt aaacctattc cccttcctgg gaagcggggg tagggactga
     1321 tgaattgggg ttttcttcag catcaagaag acaggaatga agaactcagg tgtcttcaaa
     1381 gctgctgaag tgggaccgtg ctatctgtta gccactgtgg tacctgcttg gcaaactgtg
     1441 cgcgttcctt gagatcaagt gtcttttcat tgctgtgggg atcctacggt tgaagacctc
     1501 ctctggggga ggaagaaggg ctcgtccaaa agattcccca atctcagtgc ctgtgacttg
     1561 tgctggggtc tgtctgatgt agtgataagg gggagcccgt tcgctaagcg gccggtgtct
     1621 ttaaatccag ggctccaggg gtcacaccga gtgttaaatc tccagagaca gctgtgtggg
     1681 tacgagttca tgccctagtc cctgggtcag aaggactgca tcagaatcca ctcaaatgtt
     1741 ttttcattac taattgggag atttgggtgg ggggaacaca agcatgaaaa aaaggttttc
     1801 ttgtgtcctg aagttggagt tgggggcagg agtgtgtacc aggtcgctaa gtggagggca
     1861 gctgtctgga gtgaacttgc aagcctgttg gtatcgtcca cgacaagccc tggctgagga
     1921 tttgttatta gctgcccccc tccaagaaga actcccactg tacccctctt ttctcggtga
     1981 aactacaaat gatactttct ggcacagatt tccatctcat ttttgatccc acacccagac
     2041 ttctgattaa ccgaatggcc ccaaaagtcg ggctaccttg cttctaagta gcaccaggct
     2101 cttcgggagt tgcgggagca ttcagccggc ctaggaatac acacagggtt aatccctctt
     2161 aatttaaatg ttgcccttct ctgttctaat ttgtgggact tagaattctc aattcttaga
     2221 attctcaccc attcctggtc acactttgtg caggcagcca aatgttcctg ggagtgatgg
     2281 attttaacgt gctcagaagg cctcgcagaa ggcagttagt ctaagaccaa cataaggtat
     2341 ccatcattaa gatacactca cccttctccc acttcagtgc cattaatcac ttgttaggag
     2401 taccatgtca catccagcat ccctgattta catatttgtc ggctcctctg ctctgagacc
     2461 ggctgcctaa gcctcagaaa acactacttc tctccagtgg aatacgcagc aaggacatct
     2521 cagcctctct gagtagcagg cttgctcaga ttctctaata ctagcatcct gtgatggctt
     2581 gtcccttgct agatcacaaa ggagcctcgg tgacgtcctg ctacacctgc cccccttcaa
     2641 tgtcaatgtc acttcttctt taagcaaaaa atgtaactgt tgtagtaccc attcgtttaa
     2701 gtccaatgtt gtctgaacct gcctgaatag gaaaatcatg gaaatgggtt gttttcttag
     2761 cttgggacaa ctaaccagtc tgtctgtgtg acttcgtttc tgtaacactt actagaaaac
     2821 cagatctgaa aacatttgaa tgctaaacat gtaaactgtg acagcctgca attttgtagg
     2881 cagtaaagtc atggctgcta ttgataaatg gaacctctat caaaataagg aactgtttat
     2941 aaaagtcagt ttttgtagga ctttccaagg aaaaatcacc ttggttgaat gtttctcacc
     3001 cattaaactt tgcagaagtg atctatattc agtactgttt ttaatcacct tttttaatat
     3061 caggacagag tatttgaaag gaagccacag tttgttaatt tttatatgac taaaataaat
     3121 tcggagggat ctgcgatcat attaagttga gagagggaaa aaaatcactg aaagaatttt
     3181 agcaatatag tcatccctcg gcctctgcag gggactggtt ccaggacact ccccccgacc
     3241 ccataccaaa atccgtggat gctcaagtcc cttatataaa atggcctagt agagctgcct
     3301 ctgtatccgc gggttccaca tccacagata caaagggccg actatatcga tccgaaaata
     3361 gtagatgttt tataaatgat ctgttgcagt ttctatgagt ctctatcttt caacacagat
     3421 aacttcacca tttataaaca gtgaaagtaa gagcttcata tttactgact acctatttaa
     3481 gtttgatcga ggataagttg tatcctgact aggggtcact ctgcctctat ggacttaacc
     3541 actgcttctt tagttctatt cagtagggtt ctagccacta tttctggtgt ttccttttaa
     3601 aagaggtaat agccaatcat tttgtgtttg tatttccatt cctctctatt tctgcttctg
     3661 tgcaagctgg tgattgaaca gtcaaaacta actctacttg caaagagccc cgaggactga
     3721 atgaccccct ttgaaactga gaaatgagtg ttgttatatt aatcactcca caaatgatat
     3781 gctggattaa ttgccttggg ctgatagatg gaagaactgt tttagacaac tctaaaggtg
     3841 tgatttgatg tcttcgtttt attttcagtc ttgctaaata aaatgagtct ttgtattttt
     3901 ttattacagt gaaatttagc aatagctaat attagattag gtgatataaa gagataaaac
     3961 atttctgcct agtgagttaa gtcgagcccc aaaaatatat tcagatgaat ttctattccc
     4021 attatcgatg tagaaataat aaacagctta tttgtgaaaa tggcataatt cttggtaggt
     4081 gctacggaga tttatcgtaa aatactccat acactgctgc aattctgctc caaaagagca
     4141 gaggtacttt ctgctgaccc aaaatatatt ttgatatcaa ttcggtaaga aagtcgcagt
     4201 ctctgtctgg gaaatatgcc cagcctagag ttgccgaata aaatacagga tgcccagtta
     4261 aatgtgattt tcatataaat aacgaataat ttttagtata agtatgtccc aaatattgca
     4321 tgagacatac taaaaaagtc ttcgttgttt atatgaaatt cacgtttaac tgagcatcct
     4381 gaacagttgt cccgtgaaca acacgggtcc acttttacac ggattttttt caataaacac
     4441 atactacagg actattcaat ctgtggttgg ttgccttcgc aggggcagaa ccacagatac
     4501 gagggcctgc tataaagtta taggcagatt ttcgtcgatg ccagccgggg tcagtacctc
     4561 taacacctgc attgttcaag gatcaactgt at
//
LOCUS       XM_032618498            5190 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ER lipid raft associated 2 (ERLIN2),
            transcript variant X3, mRNA.
ACCESSION   XM_032618498
VERSION     XM_032618498.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5190
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5190
                     /gene="ERLIN2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746790"
     CDS             409..1182
                     /gene="ERLIN2"
                     /codon_start=1
                     /product="erlin-2 isoform X2"
                     /protein_id="XP_032474389.1"
                     /db_xref="GeneID:116746790"
                     /translation="MIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQ
                     FCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYE
                     LMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKRI
                     SEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTPEYLQLMKYKAIASNSKIYFGKD
                     IPDMFVDSAGSLGKHLEALADKPSFGLEEEASEADAEEN"
     misc_feature    <409..1086
                     /gene="ERLIN2"
                     /note="core domain of the SPFH (stomatin, prohibitin,
                     flotillin, and HflK/C) superfamily; Region: SPFH_like;
                     cl19107"
                     /db_xref="CDD:473137"
ORIGIN      
        1 ggaaggaagt agcgtgcgga gaggtgtggc ggtttctgcg gttgcacagg ggttcggacg
       61 agtacggagc gcctggaggg acagcctggg tgaacgctca ctgatggctc agttgggagc
      121 agttttggct ctggctgcca gtttcttgtg tgcatctctc ttctcagctg tgcacaagat
      181 agaagaggga catattgggg tgtattacag aggcggtgcc ctgctgactt ccaccagcgg
      241 ccctggcttc catctcatgc tcccattcat cacatcctat aagtctgtgc agaccacact
      301 ccagacagat gaggtgaaga acgtaccttg tgggacaagg agaggcacca tattccagag
      361 cttagccttg actgctgtgt ccgtccctct tccgacagcg gtggcgtgat gatctacttc
      421 gacagaatcg aggtggtgaa cttcctggtc ccacacgcag tgtatgatat agtgaagaac
      481 tacactgccg actacgacaa ggcgctcatc ttcaacaaga tccaccacga gctgaaccag
      541 ttctgcagtg tccacacgct tcaggaggtc tacatcgagc tcttcgatca gattgatgaa
      601 aatctcaaac tggctttgca acaggacctg acctccatgg cccccgggct cgtcatccaa
      661 gctgtgcggg tgacaaagcc caacatacct gaagccatcc gcaggaacta cgagctgatg
      721 gaaagcgaga agacgaagct tctgattgca gcccagaagc agaaggtggt ggagaaggaa
      781 gccgagacag agcggaagaa ggccctcatt gaggcagaga aagtggctca ggtggcagaa
      841 atcacctatg ggcagaaggt gatggagaag gagacggaga agaggatttc ggaaatcgaa
      901 gatgctgcgt ttctggcccg ggagaaggcc aaggcggacg ccgagtgcta cactgccatg
      961 aaaatagccg aagcaaataa gctgaagctg acccctgagt atttgcagct gatgaagtac
     1021 aaggccatcg cttccaacag caagatttac tttggcaaag acatccctga catgttcgtg
     1081 gactctgcgg gcagcctggg caagcacctg gaggcgctag ctgacaagcc gagctttggc
     1141 ttagaagagg aggcctcgga ggcagacgcg gaggagaact gaatgtttct gtccccagcc
     1201 gcacgtgacc ctcaaagaga tctttatttt ttaatgatga accagccctc ccttccgcac
     1261 taccttcttt gactctcttc cacgtactgt ggtgaaaaaa gaagaaacgg acttaaacct
     1321 attccccttc ctgggaagcg ggggtaggga ctgatgaatt ggggttttct tcaggtaagt
     1381 aggttacgtg gcttctgtta agatttggaa accatgggct agaactttga gctccaggca
     1441 ttgatcttcg cccttttgaa gctggcttaa ttagggatgc tattaataag gagtgggaga
     1501 aatgcagggt gtcgcctccg atcggactgc ccttatttgg ggaaaggcag tccagtgttc
     1561 tcaacctgcc tccaaggtgg gagatgcccg tgggtgaggc ccagctaccg agcagatacg
     1621 tgcttgtaag tttgccagca gagctgtgga gaaacggctg cagtggatgt tggctttccc
     1681 ggagctcctg gccgtgagcc cgtgggttac tgccgaggcc cgctctctgg agccctggta
     1741 aggaagagct ggtgctatag gttttgcagg cttttctaca caccaccctc cttgccccag
     1801 ggctgaaagc gtggtggctt ccgaccacat ttccagggtc agggtttggc cgccaccaca
     1861 caattctttt taaaactttt cacctattct gtgatttggt ttttttctcc tcttaacctg
     1921 ttcgttggtt ccactcagca tcaagaagac aggaatgaag aactcaggtg tcttcaaagc
     1981 tgctgaagtg ggaccgtgct atctgttagc cactgtggta cctgcttggc aaactgtgcg
     2041 cgttccttga gatcaagtgt cttttcattg ctgtggggat cctacggttg aagacctcct
     2101 ctgggggagg aagaagggct cgtccaaaag attccccaat ctcagtgcct gtgacttgtg
     2161 ctggggtctg tctgatgtag tgataagggg gagcccgttc gctaagcggc cggtgtcttt
     2221 aaatccaggg ctccaggggt cacaccgagt gttaaatctc cagagacagc tgtgtgggta
     2281 cgagttcatg ccctagtccc tgggtcagaa ggactgcatc agaatccact caaatgtttt
     2341 ttcattacta attgggagat ttgggtgggg ggaacacaag catgaaaaaa aggttttctt
     2401 gtgtcctgaa gttggagttg ggggcaggag tgtgtaccag gtcgctaagt ggagggcagc
     2461 tgtctggagt gaacttgcaa gcctgttggt atcgtccacg acaagccctg gctgaggatt
     2521 tgttattagc tgcccccctc caagaagaac tcccactgta cccctctttt ctcggtgaaa
     2581 ctacaaatga tactttctgg cacagatttc catctcattt ttgatcccac acccagactt
     2641 ctgattaacc gaatggcccc aaaagtcggg ctaccttgct tctaagtagc accaggctct
     2701 tcgggagttg cgggagcatt cagccggcct aggaatacac acagggttaa tccctcttaa
     2761 tttaaatgtt gcccttctct gttctaattt gtgggactta gaattctcaa ttcttagaat
     2821 tctcacccat tcctggtcac actttgtgca ggcagccaaa tgttcctggg agtgatggat
     2881 tttaacgtgc tcagaaggcc tcgcagaagg cagttagtct aagaccaaca taaggtatcc
     2941 atcattaaga tacactcacc cttctcccac ttcagtgcca ttaatcactt gttaggagta
     3001 ccatgtcaca tccagcatcc ctgatttaca tatttgtcgg ctcctctgct ctgagaccgg
     3061 ctgcctaagc ctcagaaaac actacttctc tccagtggaa tacgcagcaa ggacatctca
     3121 gcctctctga gtagcaggct tgctcagatt ctctaatact agcatcctgt gatggcttgt
     3181 cccttgctag atcacaaagg agcctcggtg acgtcctgct acacctgccc cccttcaatg
     3241 tcaatgtcac ttcttcttta agcaaaaaat gtaactgttg tagtacccat tcgtttaagt
     3301 ccaatgttgt ctgaacctgc ctgaatagga aaatcatgga aatgggttgt tttcttagct
     3361 tgggacaact aaccagtctg tctgtgtgac ttcgtttctg taacacttac tagaaaacca
     3421 gatctgaaaa catttgaatg ctaaacatgt aaactgtgac agcctgcaat tttgtaggca
     3481 gtaaagtcat ggctgctatt gataaatgga acctctatca aaataaggaa ctgtttataa
     3541 aagtcagttt ttgtaggact ttccaaggaa aaatcacctt ggttgaatgt ttctcaccca
     3601 ttaaactttg cagaagtgat ctatattcag tactgttttt aatcaccttt tttaatatca
     3661 ggacagagta tttgaaagga agccacagtt tgttaatttt tatatgacta aaataaattc
     3721 ggagggatct gcgatcatat taagttgaga gagggaaaaa aatcactgaa agaattttag
     3781 caatatagtc atccctcggc ctctgcaggg gactggttcc aggacactcc ccccgacccc
     3841 ataccaaaat ccgtggatgc tcaagtccct tatataaaat ggcctagtag agctgcctct
     3901 gtatccgcgg gttccacatc cacagataca aagggccgac tatatcgatc cgaaaatagt
     3961 agatgtttta taaatgatct gttgcagttt ctatgagtct ctatctttca acacagataa
     4021 cttcaccatt tataaacagt gaaagtaaga gcttcatatt tactgactac ctatttaagt
     4081 ttgatcgagg ataagttgta tcctgactag gggtcactct gcctctatgg acttaaccac
     4141 tgcttcttta gttctattca gtagggttct agccactatt tctggtgttt ccttttaaaa
     4201 gaggtaatag ccaatcattt tgtgtttgta tttccattcc tctctatttc tgcttctgtg
     4261 caagctggtg attgaacagt caaaactaac tctacttgca aagagccccg aggactgaat
     4321 gacccccttt gaaactgaga aatgagtgtt gttatattaa tcactccaca aatgatatgc
     4381 tggattaatt gccttgggct gatagatgga agaactgttt tagacaactc taaaggtgtg
     4441 atttgatgtc ttcgttttat tttcagtctt gctaaataaa atgagtcttt gtattttttt
     4501 attacagtga aatttagcaa tagctaatat tagattaggt gatataaaga gataaaacat
     4561 ttctgcctag tgagttaagt cgagccccaa aaatatattc agatgaattt ctattcccat
     4621 tatcgatgta gaaataataa acagcttatt tgtgaaaatg gcataattct tggtaggtgc
     4681 tacggagatt tatcgtaaaa tactccatac actgctgcaa ttctgctcca aaagagcaga
     4741 ggtactttct gctgacccaa aatatatttt gatatcaatt cggtaagaaa gtcgcagtct
     4801 ctgtctggga aatatgccca gcctagagtt gccgaataaa atacaggatg cccagttaaa
     4861 tgtgattttc atataaataa cgaataattt ttagtataag tatgtcccaa atattgcatg
     4921 agacatacta aaaaagtctt cgttgtttat atgaaattca cgtttaactg agcatcctga
     4981 acagttgtcc cgtgaacaac acgggtccac ttttacacgg atttttttca ataaacacat
     5041 actacaggac tattcaatct gtggttggtt gccttcgcag gggcagaacc acagatacga
     5101 gggcctgcta taaagttata ggcagatttt cgtcgatgcc agccggggtc agtacctcta
     5161 acacctgcat tgttcaagga tcaactgtat
//
LOCUS       XM_032618499            1992 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgin A7 (GOLGA7), transcript variant
            X1, mRNA.
ACCESSION   XM_032618499
VERSION     XM_032618499.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1992
                     /gene="GOLGA7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746791"
     CDS             176..589
                     /gene="GOLGA7"
                     /codon_start=1
                     /product="golgin subfamily A member 7 isoform X1"
                     /protein_id="XP_032474390.1"
                     /db_xref="GeneID:116746791"
                     /translation="MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFE
                     ETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNE
                     KIYAPQGLLLTDPIERGLRVIEITIYEDRGMSSGR"
     misc_feature    206..547
                     /gene="GOLGA7"
                     /note="Golgin subfamily A member 7/ERF4 family; Region:
                     Erf4; pfam10256"
                     /db_xref="CDD:463029"
ORIGIN      
        1 ggaggccgag ttgaggggcg aggaaagagg ccttttgcgg caggacgtaa gtgacggcgt
       61 aggcggtgcg acacccgctg gagggcaacg gaggcggttt cgtgtttccc gggccgaacc
      121 gggctctggg gggcgcgggg cctggcccgg gagcgcggcc cgtcctgtcc tcgccatgag
      181 gccgcagcag gcgccagtgt ccgggaaggt tttcattcag cgagactaca gcagtggcac
      241 ccgctgccag ttccagacca agttccccgc ggagctggag aaccggattg ataggcaaca
      301 atttgaagaa acagttcgaa ctctaaataa cctttatgct gaagcagaga agctcggggg
      361 ccagtcctat cttgaaggct gcctggcttg tctaacagcg tacaccatct tcttgtgcat
      421 ggaaactcac tacgagaagg ttctgaagaa agtctccaaa tacattcaag agcagaatga
      481 gaagatctat gctccccaag gcctcctcct gacagatccc atcgagagag gacttcgagt
      541 tattgaaatt actatttatg aagacagagg catgagcagt ggaagataaa ccataggatt
      601 aaaggcccac ctccagctgg gaccctcatc tgtccaccgg ccgaccgcag agtgtccccc
      661 acctcctctc cagagcatca ttccttcgta tctgctgcca gagccacggt gccattcact
      721 ccaaggactg actttgtaaa attccacacc tggagtgacc tctagtcgct cagcatccac
      781 tttgtgtctc caaattgtgt aggactctgt aatcttttga ttagtttttg agaaaacgca
      841 atgaagcatt tcactttttt tattcaaagc cattaataaa atatgcagtt ggtcagccca
      901 acacagttta tttcttacct gccagcagtg ccagtggctc tcgtcattcc ttgggcctca
      961 gcaagtcgtg aactagccag tgctcagtct tactccccca aattcataaa acgcttttcg
     1021 ccaggatttt ggtgaagggt gggctgcgtc tggttttgct aatgcatctc ccagatttca
     1081 gagaattacc agttttgcca tgactcaaag cttaacgatc aagttctgct gttcagtttc
     1141 tcaaacggaa gctcattgga aaaataatgt ataatgttac ctgttttatt atagcaattc
     1201 ctgattaaag cagtatttaa tgcaatttcc agatttttgt tttttgggtt tttttttttt
     1261 tgagaattct gttattactg cattaccttg aacattggga agatgtggta tgtgttgctt
     1321 gttccttata aaaataagta agcacaataa agtggatgct aaaccatcaa acacaaatgt
     1381 ccctgctgtg tccctgaatg agcaagtgtt aataaatatt ttaattatag ttttgttata
     1441 aatataactt aagagaaaaa aatttgatag gaataatact atatattgct aatttttaac
     1501 tatccctact ggcaaacttt atgattccta gactttcctc atatatggta ttcagtgcgc
     1561 agaaatatca tgattggttc aagttcagta agtgaagtga tttccaacta aaactctcaa
     1621 gtctgtgtca ctgtttctag ttctttttgg ccgtgtgttc ttagtattgg gacttcctgt
     1681 gcccttcatc tctgggcttt gagagcactg tatttgggag aaagttagga catatactag
     1741 gagagaatga aagggttaaa agttttcctt tcagagatat tgtaggtgct aatactggat
     1801 ttaacctttc agatttaatt tcttttatgg gtctgttagt tattcagtaa atcccatagg
     1861 tctatgtaat attttaattg tatgaaactt gttactttat agcctataat agtgtgtctg
     1921 tctgcctttt aaacccattg caataacttt gctgaaatat taacacatta gtaaaacttt
     1981 tcttaaacag at
//
LOCUS       XM_032618500            1956 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgin A7 (GOLGA7), transcript variant
            X2, mRNA.
ACCESSION   XM_032618500
VERSION     XM_032618500.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1956
                     /gene="GOLGA7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746791"
     CDS             140..553
                     /gene="GOLGA7"
                     /codon_start=1
                     /product="golgin subfamily A member 7 isoform X1"
                     /protein_id="XP_032474391.1"
                     /db_xref="GeneID:116746791"
                     /translation="MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFE
                     ETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNE
                     KIYAPQGLLLTDPIERGLRVIEITIYEDRGMSSGR"
     misc_feature    170..511
                     /gene="GOLGA7"
                     /note="Golgin subfamily A member 7/ERF4 family; Region:
                     Erf4; pfam10256"
                     /db_xref="CDD:463029"
ORIGIN      
        1 gtgcgacacc cgctggaggg caacggaggc ggtttcgtgt ttcccgggcc gaaccgggct
       61 ctggggggcg cggggcctgg cccgggaggt agctgaaggc ccgcggtgaa agcatggcgc
      121 ggcccgtcct gtcctcgcca tgaggccgca gcaggcgcca gtgtccggga aggttttcat
      181 tcagcgagac tacagcagtg gcacccgctg ccagttccag accaagttcc ccgcggagct
      241 ggagaaccgg attgataggc aacaatttga agaaacagtt cgaactctaa ataaccttta
      301 tgctgaagca gagaagctcg ggggccagtc ctatcttgaa ggctgcctgg cttgtctaac
      361 agcgtacacc atcttcttgt gcatggaaac tcactacgag aaggttctga agaaagtctc
      421 caaatacatt caagagcaga atgagaagat ctatgctccc caaggcctcc tcctgacaga
      481 tcccatcgag agaggacttc gagttattga aattactatt tatgaagaca gaggcatgag
      541 cagtggaaga taaaccatag gattaaaggc ccacctccag ctgggaccct catctgtcca
      601 ccggccgacc gcagagtgtc ccccacctcc tctccagagc atcattcctt cgtatctgct
      661 gccagagcca cggtgccatt cactccaagg actgactttg taaaattcca cacctggagt
      721 gacctctagt cgctcagcat ccactttgtg tctccaaatt gtgtaggact ctgtaatctt
      781 ttgattagtt tttgagaaaa cgcaatgaag catttcactt tttttattca aagccattaa
      841 taaaatatgc agttggtcag cccaacacag tttatttctt acctgccagc agtgccagtg
      901 gctctcgtca ttccttgggc ctcagcaagt cgtgaactag ccagtgctca gtcttactcc
      961 cccaaattca taaaacgctt ttcgccagga ttttggtgaa gggtgggctg cgtctggttt
     1021 tgctaatgca tctcccagat ttcagagaat taccagtttt gccatgactc aaagcttaac
     1081 gatcaagttc tgctgttcag tttctcaaac ggaagctcat tggaaaaata atgtataatg
     1141 ttacctgttt tattatagca attcctgatt aaagcagtat ttaatgcaat ttccagattt
     1201 ttgttttttg ggtttttttt tttttgagaa ttctgttatt actgcattac cttgaacatt
     1261 gggaagatgt ggtatgtgtt gcttgttcct tataaaaata agtaagcaca ataaagtgga
     1321 tgctaaacca tcaaacacaa atgtccctgc tgtgtccctg aatgagcaag tgttaataaa
     1381 tattttaatt atagttttgt tataaatata acttaagaga aaaaaatttg ataggaataa
     1441 tactatatat tgctaatttt taactatccc tactggcaaa ctttatgatt cctagacttt
     1501 cctcatatat ggtattcagt gcgcagaaat atcatgattg gttcaagttc agtaagtgaa
     1561 gtgatttcca actaaaactc tcaagtctgt gtcactgttt ctagttcttt ttggccgtgt
     1621 gttcttagta ttgggacttc ctgtgccctt catctctggg ctttgagagc actgtatttg
     1681 ggagaaagtt aggacatata ctaggagaga atgaaagggt taaaagtttt cctttcagag
     1741 atattgtagg tgctaatact ggatttaacc tttcagattt aatttctttt atgggtctgt
     1801 tagttattca gtaaatccca taggtctatg taatatttta attgtatgaa acttgttact
     1861 ttatagccta taatagtgtg tctgtctgcc ttttaaaccc attgcaataa ctttgctgaa
     1921 atattaacac attagtaaaa cttttcttaa acagat
//
LOCUS       XM_032618502            1945 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgin A7 (GOLGA7), transcript variant
            X3, mRNA.
ACCESSION   XM_032618502
VERSION     XM_032618502.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1945
                     /gene="GOLGA7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746791"
     CDS             129..542
                     /gene="GOLGA7"
                     /codon_start=1
                     /product="golgin subfamily A member 7 isoform X1"
                     /protein_id="XP_032474393.1"
                     /db_xref="GeneID:116746791"
                     /translation="MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFE
                     ETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNE
                     KIYAPQGLLLTDPIERGLRVIEITIYEDRGMSSGR"
     misc_feature    159..500
                     /gene="GOLGA7"
                     /note="Golgin subfamily A member 7/ERF4 family; Region:
                     Erf4; pfam10256"
                     /db_xref="CDD:463029"
ORIGIN      
        1 ggtgcgacac ccgctggagg gcaacggagg cggtttcgtg tttcccgggc cgaaccgggc
       61 tctggggggc gcggggcctg gcccgggagg tagctgaagg cccgcgcgcg gcccgtcctg
      121 tcctcgccat gaggccgcag caggcgccag tgtccgggaa ggttttcatt cagcgagact
      181 acagcagtgg cacccgctgc cagttccaga ccaagttccc cgcggagctg gagaaccgga
      241 ttgataggca acaatttgaa gaaacagttc gaactctaaa taacctttat gctgaagcag
      301 agaagctcgg gggccagtcc tatcttgaag gctgcctggc ttgtctaaca gcgtacacca
      361 tcttcttgtg catggaaact cactacgaga aggttctgaa gaaagtctcc aaatacattc
      421 aagagcagaa tgagaagatc tatgctcccc aaggcctcct cctgacagat cccatcgaga
      481 gaggacttcg agttattgaa attactattt atgaagacag aggcatgagc agtggaagat
      541 aaaccatagg attaaaggcc cacctccagc tgggaccctc atctgtccac cggccgaccg
      601 cagagtgtcc cccacctcct ctccagagca tcattccttc gtatctgctg ccagagccac
      661 ggtgccattc actccaagga ctgactttgt aaaattccac acctggagtg acctctagtc
      721 gctcagcatc cactttgtgt ctccaaattg tgtaggactc tgtaatcttt tgattagttt
      781 ttgagaaaac gcaatgaagc atttcacttt ttttattcaa agccattaat aaaatatgca
      841 gttggtcagc ccaacacagt ttatttctta cctgccagca gtgccagtgg ctctcgtcat
      901 tccttgggcc tcagcaagtc gtgaactagc cagtgctcag tcttactccc ccaaattcat
      961 aaaacgcttt tcgccaggat tttggtgaag ggtgggctgc gtctggtttt gctaatgcat
     1021 ctcccagatt tcagagaatt accagttttg ccatgactca aagcttaacg atcaagttct
     1081 gctgttcagt ttctcaaacg gaagctcatt ggaaaaataa tgtataatgt tacctgtttt
     1141 attatagcaa ttcctgatta aagcagtatt taatgcaatt tccagatttt tgttttttgg
     1201 gttttttttt ttttgagaat tctgttatta ctgcattacc ttgaacattg ggaagatgtg
     1261 gtatgtgttg cttgttcctt ataaaaataa gtaagcacaa taaagtggat gctaaaccat
     1321 caaacacaaa tgtccctgct gtgtccctga atgagcaagt gttaataaat attttaatta
     1381 tagttttgtt ataaatataa cttaagagaa aaaaatttga taggaataat actatatatt
     1441 gctaattttt aactatccct actggcaaac tttatgattc ctagactttc ctcatatatg
     1501 gtattcagtg cgcagaaata tcatgattgg ttcaagttca gtaagtgaag tgatttccaa
     1561 ctaaaactct caagtctgtg tcactgtttc tagttctttt tggccgtgtg ttcttagtat
     1621 tgggacttcc tgtgcccttc atctctgggc tttgagagca ctgtatttgg gagaaagtta
     1681 ggacatatac taggagagaa tgaaagggtt aaaagttttc ctttcagaga tattgtaggt
     1741 gctaatactg gatttaacct ttcagattta atttctttta tgggtctgtt agttattcag
     1801 taaatcccat aggtctatgt aatattttaa ttgtatgaaa cttgttactt tatagcctat
     1861 aatagtgtgt ctgtctgcct tttaaaccca ttgcaataac tttgctgaaa tattaacaca
     1921 ttagtaaaac ttttcttaaa cagat
//
LOCUS       XM_032618503            2030 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgin A7 (GOLGA7), transcript variant
            X4, mRNA.
ACCESSION   XM_032618503
VERSION     XM_032618503.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2030
                     /gene="GOLGA7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746791"
     CDS             214..627
                     /gene="GOLGA7"
                     /codon_start=1
                     /product="golgin subfamily A member 7 isoform X1"
                     /protein_id="XP_032474394.1"
                     /db_xref="GeneID:116746791"
                     /translation="MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFE
                     ETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNE
                     KIYAPQGLLLTDPIERGLRVIEITIYEDRGMSSGR"
     misc_feature    244..585
                     /gene="GOLGA7"
                     /note="Golgin subfamily A member 7/ERF4 family; Region:
                     Erf4; pfam10256"
                     /db_xref="CDD:463029"
ORIGIN      
        1 tccttccgga tggactcctc cgtgctaggt gggggacgga gtaggccctg gccccgccca
       61 cggtgcccgc ccccgcaccg cagcgcgcag cctcggcagg atcgctttac ggccggagga
      121 gtgggtgggt cctagactcg aggtaggagg ccgagttgag gggcgaggaa agaggccttt
      181 tgcggcagga ccgcggcccg tcctgtcctc gccatgaggc cgcagcaggc gccagtgtcc
      241 gggaaggttt tcattcagcg agactacagc agtggcaccc gctgccagtt ccagaccaag
      301 ttccccgcgg agctggagaa ccggattgat aggcaacaat ttgaagaaac agttcgaact
      361 ctaaataacc tttatgctga agcagagaag ctcgggggcc agtcctatct tgaaggctgc
      421 ctggcttgtc taacagcgta caccatcttc ttgtgcatgg aaactcacta cgagaaggtt
      481 ctgaagaaag tctccaaata cattcaagag cagaatgaga agatctatgc tccccaaggc
      541 ctcctcctga cagatcccat cgagagagga cttcgagtta ttgaaattac tatttatgaa
      601 gacagaggca tgagcagtgg aagataaacc ataggattaa aggcccacct ccagctggga
      661 ccctcatctg tccaccggcc gaccgcagag tgtcccccac ctcctctcca gagcatcatt
      721 ccttcgtatc tgctgccaga gccacggtgc cattcactcc aaggactgac tttgtaaaat
      781 tccacacctg gagtgacctc tagtcgctca gcatccactt tgtgtctcca aattgtgtag
      841 gactctgtaa tcttttgatt agtttttgag aaaacgcaat gaagcatttc acttttttta
      901 ttcaaagcca ttaataaaat atgcagttgg tcagcccaac acagtttatt tcttacctgc
      961 cagcagtgcc agtggctctc gtcattcctt gggcctcagc aagtcgtgaa ctagccagtg
     1021 ctcagtctta ctcccccaaa ttcataaaac gcttttcgcc aggattttgg tgaagggtgg
     1081 gctgcgtctg gttttgctaa tgcatctccc agatttcaga gaattaccag ttttgccatg
     1141 actcaaagct taacgatcaa gttctgctgt tcagtttctc aaacggaagc tcattggaaa
     1201 aataatgtat aatgttacct gttttattat agcaattcct gattaaagca gtatttaatg
     1261 caatttccag atttttgttt tttgggtttt tttttttttg agaattctgt tattactgca
     1321 ttaccttgaa cattgggaag atgtggtatg tgttgcttgt tccttataaa aataagtaag
     1381 cacaataaag tggatgctaa accatcaaac acaaatgtcc ctgctgtgtc cctgaatgag
     1441 caagtgttaa taaatatttt aattatagtt ttgttataaa tataacttaa gagaaaaaaa
     1501 tttgatagga ataatactat atattgctaa tttttaacta tccctactgg caaactttat
     1561 gattcctaga ctttcctcat atatggtatt cagtgcgcag aaatatcatg attggttcaa
     1621 gttcagtaag tgaagtgatt tccaactaaa actctcaagt ctgtgtcact gtttctagtt
     1681 ctttttggcc gtgtgttctt agtattggga cttcctgtgc ccttcatctc tgggctttga
     1741 gagcactgta tttgggagaa agttaggaca tatactagga gagaatgaaa gggttaaaag
     1801 ttttcctttc agagatattg taggtgctaa tactggattt aacctttcag atttaatttc
     1861 ttttatgggt ctgttagtta ttcagtaaat cccataggtc tatgtaatat tttaattgta
     1921 tgaaacttgt tactttatag cctataatag tgtgtctgtc tgccttttaa acccattgca
     1981 ataactttgc tgaaatatta acacattagt aaaacttttc ttaaacagat
//
LOCUS       XM_032618504            1998 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus golgin A7 (GOLGA7), transcript variant
            X5, mRNA.
ACCESSION   XM_032618504
VERSION     XM_032618504.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1998
                     /gene="GOLGA7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746791"
     CDS             177..581
                     /gene="GOLGA7"
                     /codon_start=1
                     /product="golgin subfamily A member 7 isoform X2"
                     /protein_id="XP_032474395.1"
                     /db_xref="GeneID:116746791"
                     /translation="MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFE
                     ETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNE
                     KIYAPQGLLLTDPIERGLRVFRLKLLFMKTEA"
     misc_feature    207..545
                     /gene="GOLGA7"
                     /note="Golgin subfamily A member 7/ERF4 family; Region:
                     Erf4; pfam10256"
                     /db_xref="CDD:463029"
ORIGIN      
        1 aggaggccga gttgaggggc gaggaaagag gccttttgcg gcaggacgta agtgacggcg
       61 taggcggtgc gacacccgct ggagggcaac ggaggcggtt tcgtgtttcc cgggccgaac
      121 cgggctctgg ggggcgcggg gcctggcccg ggagcgcggc ccgtcctgtc ctcgccatga
      181 ggccgcagca ggcgccagtg tccgggaagg ttttcattca gcgagactac agcagtggca
      241 cccgctgcca gttccagacc aagttccccg cggagctgga gaaccggatt gataggcaac
      301 aatttgaaga aacagttcga actctaaata acctttatgc tgaagcagag aagctcgggg
      361 gccagtccta tcttgaaggc tgcctggctt gtctaacagc gtacaccatc ttcttgtgca
      421 tggaaactca ctacgagaag gttctgaaga aagtctccaa atacattcaa gagcagaatg
      481 agaagatcta tgctccccaa ggcctcctcc tgacagatcc catcgagaga ggacttcgag
      541 tttttagatt gaaattacta tttatgaaga cagaggcatg agcagtggaa gataaaccat
      601 aggattaaag gcccacctcc agctgggacc ctcatctgtc caccggccga ccgcagagtg
      661 tcccccacct cctctccaga gcatcattcc ttcgtatctg ctgccagagc cacggtgcca
      721 ttcactccaa ggactgactt tgtaaaattc cacacctgga gtgacctcta gtcgctcagc
      781 atccactttg tgtctccaaa ttgtgtagga ctctgtaatc ttttgattag tttttgagaa
      841 aacgcaatga agcatttcac tttttttatt caaagccatt aataaaatat gcagttggtc
      901 agcccaacac agtttatttc ttacctgcca gcagtgccag tggctctcgt cattccttgg
      961 gcctcagcaa gtcgtgaact agccagtgct cagtcttact cccccaaatt cataaaacgc
     1021 ttttcgccag gattttggtg aagggtgggc tgcgtctggt tttgctaatg catctcccag
     1081 atttcagaga attaccagtt ttgccatgac tcaaagctta acgatcaagt tctgctgttc
     1141 agtttctcaa acggaagctc attggaaaaa taatgtataa tgttacctgt tttattatag
     1201 caattcctga ttaaagcagt atttaatgca atttccagat ttttgttttt tgggtttttt
     1261 tttttttgag aattctgtta ttactgcatt accttgaaca ttgggaagat gtggtatgtg
     1321 ttgcttgttc cttataaaaa taagtaagca caataaagtg gatgctaaac catcaaacac
     1381 aaatgtccct gctgtgtccc tgaatgagca agtgttaata aatattttaa ttatagtttt
     1441 gttataaata taacttaaga gaaaaaaatt tgataggaat aatactatat attgctaatt
     1501 tttaactatc cctactggca aactttatga ttcctagact ttcctcatat atggtattca
     1561 gtgcgcagaa atatcatgat tggttcaagt tcagtaagtg aagtgatttc caactaaaac
     1621 tctcaagtct gtgtcactgt ttctagttct ttttggccgt gtgttcttag tattgggact
     1681 tcctgtgccc ttcatctctg ggctttgaga gcactgtatt tgggagaaag ttaggacata
     1741 tactaggaga gaatgaaagg gttaaaagtt ttcctttcag agatattgta ggtgctaata
     1801 ctggatttaa cctttcagat ttaatttctt ttatgggtct gttagttatt cagtaaatcc
     1861 cataggtcta tgtaatattt taattgtatg aaacttgtta ctttatagcc tataatagtg
     1921 tgtctgtctg ccttttaaac ccattgcaat aactttgctg aaatattaac acattagtaa
     1981 aacttttctt aaacagat
//
LOCUS       XM_032618505            9236 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lysine acetyltransferase 6A (KAT6A),
            transcript variant X1, mRNA.
ACCESSION   XM_032618505
VERSION     XM_032618505.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9236
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9236
                     /gene="KAT6A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 12 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746792"
     CDS             455..6526
                     /gene="KAT6A"
                     /codon_start=1
                     /product="histone acetyltransferase KAT6A isoform X1"
                     /protein_id="XP_032474396.1"
                     /db_xref="GeneID:116746792"
                     /translation="MVKLANPLYTEWILEAIKKVKKQKQRPSEERICNAVSSSHGLDR
                     KTVLEQLELSVKDGTILKVSNKGLNSYKDPDNPGRIALPKPRNHGKVDNKQNVDWNKL
                     IKRAVEGLAESGGSTLKSIERFLKGQKDVSALFGGGAASGFHQQLRLAIKRAVGHGRL
                     LKDGPLYRLNTKATNVDGKESCESLSSLPPVSLLPHEKDKPVAEPIPICSFCLGTKDQ
                     NREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNAD
                     NMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPRKKGRKLLQKKAAQIKRRYANP
                     IGRPKNRLKKQNTVSKGPFSKVRTGPGRGRKRKITLSSHSASSSEDGYLEQIDGLDFC
                     RDGSVPLKFNKKTKGLIDGLTKFFTPSPDGRKPRGEVVDYSEQYRVRKKGNRKSSTSD
                     WPTDNQDGWDGKQESEERLFGSQEVMTEKDMELFRDIQEQALQKVGVTGPPDPQVRCP
                     SVIEFGKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWFHPPA
                     NEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKG
                     CHLVGYFSKEKHCQQKYNVSCIMILPQYQRKGYGRFLIDFSYLLSKREGQAGSPEKPL
                     SDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRMLDFRS
                     DQFVIIRREKLIQDHMAKLQLNLRPVDVDPECLRWTPVIVSNSVVSEEEEEEEEEEEE
                     EEEEEEEEEEGEQEEPQSQEGELETSVGKSASRENKEQDSYSSVESEKKPEVTAPASS
                     TRLNKQVLPRDSLPANNQPSRRGRWRRKNRKAQERFGDEDSKLLLEETSAPPEQYGDC
                     EEKSETCQEEYTEGQEQSAASQEQPSQDAKPDGPKRRPSEGLELWRGPLKKSPEPLKC
                     GLPESHDRLPRRYSEGRYSDGDRALLRGCSESSEEEGEPESPRSSSPPVLTKPTLKRK
                     KPILHRRRRVRKRKHHNSSVVTETISETTEVLDEPFEDSDSERPMPRLEPTFEIDQEE
                     EEEDENELFSQGYFRHLSSQDVLRCRPASKRKSKDRDEYEDSDDADDTPILKPVSLLR
                     KCDVKDSPLEPDTSTPMKKKKGWPKGKSRKPVHWKKRPGRKPGLKLNRELAAVSTREC
                     VVEPVVPLPEPGREPQVQENQEAVGPREDLPLREERKEGEELPLEAEEGEEGEEEEDT
                     TSSDVRAASPADSCSPETGAKGPEVGEEEEDPRAPVGQQPSEEGPQDLVQRAREEEEE
                     EEEEDAAAETQQSEDRDADDEDDGHLESTEKKGPEEQPAGGNVKEEHSGQESFLDPDV
                     HSSREHAKDKEETEPDSEEEQTSHEASVVSEHMPGSEDDHEEDSHSKEELLQLKEEAE
                     IPHSDLDLETVQAVQSLTQEESSEHEGAYQDCEETLAACQTLQSYTQADEDPQLPLVE
                     DCHTSEHNSPLSSVQSHPSQSVRSVGSPSVPALEGGYTQISPEQGSLSAPSMQNMETS
                     PMMDVPSVSDHSQQVVDSGFSDLGSIESTTENYENPSSYDSTMGGSICGNSSSQSSCS
                     YGGLSSSSSLTQNSCVVTQQMAGVGGSCSLMPQSSVPPAAATCSIKSPQSCAVERPPS
                     TQQPPPPQPPPQAPPAPPPAPPPPPPPPAPQPPPPPPQPQPPAPPPQQQQPSLSQCSM
                     NSSFTPAPMIMEIPESGSTGNISIYERIPGDFGAGSYSQPSATFSLAKLQQLTNTIMD
                     PHAMPYSHSPAVTSYAASVSLSNTGLPQLAPSHPLAGTPQAQATMTPPPNLASTTMNL
                     TSPLLQCNMSATNIGIPHTQRLQGQMPVKGHISIRSKSAPLPSAAAHQQQLYGRSPPA
                     VAMQAGPRALAVQRGMNMGVNLMPTPAYNVNSMNMNTLNAMNSYRMTQPMMNSSYHSN
                     PAYMNQTAQYPMQMQMGMMGSQAYTQQPMQPNPHGNMMYTGPSHHSYMNAAGVPKQSL
                     NGPYMRR"
     misc_feature    707..940
                     /gene="KAT6A"
                     /note="Domain in histone families 1 and 5; Region: H15;
                     smart00526"
                     /db_xref="CDD:197772"
     misc_feature    1067..1240
                     /gene="KAT6A"
                     /note="PHD finger 1 found in monocytic leukemia
                     zinc-finger protein (MOZ) and its factor (MORF); Region:
                     PHD1_MOZ_MORF; cd15618"
                     /db_xref="CDD:277090"
     misc_feature    order(1076..1078,1082..1087,1091..1093,1142..1144,
                     1157..1165,1178..1186,1223..1225,1229..1237)
                     /gene="KAT6A"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:277090"
     misc_feature    order(1184..1186,1196..1198,1205..1210,1217..1219,
                     1223..1228,1232..1234,1238..1240)
                     /gene="KAT6A"
                     /note="PHD2 interface [polypeptide binding]; other site"
                     /db_xref="CDD:277090"
     misc_feature    1244..1384
                     /gene="KAT6A"
                     /note="PHD finger 2 found in monocytic leukemia
                     zinc-finger protein (MOZ) and its factor (MORF); Region:
                     PHD2_KAT6A_6B; cd15527"
                     /db_xref="CDD:277002"
     misc_feature    order(1244..1246,1259..1261,1298..1312)
                     /gene="KAT6A"
                     /note="PHD1 interface [polypeptide binding]; other site"
                     /db_xref="CDD:277002"
     misc_feature    order(1280..1300,1307..1309,1352..1363)
                     /gene="KAT6A"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:277002"
     misc_feature    <1961..2785
                     /gene="KAT6A"
                     /note="MYST -like histone acetyltransferase; Provisional;
                     Region: PLN00104"
                     /db_xref="CDD:215056"
ORIGIN      
        1 cccccgcggc tgttccaccg cctcgcctcc cctccccccg gccggagctc actgtctcca
       61 agatggcggc cgtgtcagtt tggggcatct ccgcggtccg gcccggggcc ccgcttaccc
      121 ggcgctcttc tcccccggca taagatgcac atttttctgc tgggaatgag atgttcttga
      181 gttcttacaa ctttatgaac agacccatgt gtggtgctat tgagaagttt gttgagaagt
      241 ttgaagatat ttcagataac aggttgtttt ggtttctaaa gtaaaagtgg ggaggcactc
      301 tgttttgtga aaggaggaag gactcaggcc agaaaacttg tatgctatgg ttaactggtt
      361 cccagcctcc gggaatgttg ttttccatgg tgtaaaactt actcagcatc aggataaggg
      421 ataacgactc tatggatata cagaatcctt caccatggta aaactcgcca acccgctgta
      481 tacggagtgg attttggagg ccatcaaaaa agtgaagaag caaaaacagc gtccttcaga
      541 agaaaggata tgcaatgcag tgtcttcatc ccatggcttg gatcgtaaaa ctgttttaga
      601 acaattggag ttgagtgtca aagatggaac aattttgaaa gtctcaaata aaggactcaa
      661 ttcctataaa gatcctgata atcctgggcg aatagcactt cctaaacctc gaaaccatgg
      721 aaaagtggat aataaacaaa acgtagactg gaataaactg atcaagcggg cagtcgaggg
      781 cttggcagag tccggtggct caactttgaa aagcattgaa cgttttttga aaggtcagaa
      841 ggatgtgtct gcattgtttg gaggcggtgc tgcctctggc tttcaccagc agttacgatt
      901 ggctattaaa cgcgccgttg gccacggcag actccttaaa gatggacctc tttatcggct
      961 caacactaaa gcaaccaatg tggatgggaa agagagttgt gagtctcttt cttctttacc
     1021 tccagtgtca ctccttccac atgaaaagga taagccagtt gctgaaccaa tccccatctg
     1081 tagtttctgt cttggtacaa aagaccaaaa ccgagaaaag aagccagagg aactaatctc
     1141 ctgtgcagac tgcggcaaca gtggtcatcc atcctgttta aagttttccc ctgagctaac
     1201 ggttagagtg aaggccttac ggtggcagtg catcgagtgt aaaacgtgca gctcctgtcg
     1261 agatcaaggc aaaaatgcag ataacatgct cttttgtgat tcctgtgacc gaggttttca
     1321 catggagtgt tgtgatccgc cactcacccg gatgccaaaa ggcatgtgga tatgtcagat
     1381 atgtcgacct aggaaaaaag gacgaaaact tctacagaag aaggcggcac agataaaacg
     1441 gcgctatgct aatccaatag gacgtccaaa aaacaggtta aagaaacaaa acacggtgtc
     1501 aaaaggtccc ttcagcaaag ttcgaacagg ccctggaagg ggtcggaaac gtaaaatcac
     1561 tctctccagc cattcagcat cgtcatcaga agacggatat ctagagcaaa tagatggctt
     1621 ggacttctgc agagacggca gcgtcccctt gaagttcaat aagaaaacca aagggctcat
     1681 cgatggcctt accaaattct ttaccccttc ccctgatggg cggaaacctc gaggggaggt
     1741 ggtggactac tctgagcaat atagagtcag gaaaaagggc aacagaaaat caagcacttc
     1801 agattggccc acagacaatc aggatggctg ggacggcaaa caagaaagtg aggaacggct
     1861 ttttgggagc caggaagtca tgacagagaa agatatggaa ttatttcgtg atatccaaga
     1921 acaagcactg cagaaagttg gagtgaccgg tccccctgat ccacaagtcc gctgtccctc
     1981 tgttattgag tttgggaagt atgaaatcca cacctggtac tcttctccat atcctcaaga
     2041 atactcaagg ctgcctaagt tgtatctctg tgaattctgt ctaaaatata tgaaaagtag
     2101 aactattcta cagcagcaca tgaagaaatg tggttggttc catcctcctg ctaatgagat
     2161 ttatagaaag aataacattt ctgtctttga ggttgatggg aatgtgagta ccatttattg
     2221 tcagaacctg tgtctcttgg caaaattgtt tcttgaccac aaaacactct attatgatgt
     2281 ggagccattt cttttttatg tactaaccca gaatgatgtc aagggctgcc accttgttgg
     2341 ctatttttct aaagaaaagc actgccaaca gaagtacaac gtttcctgta taatgattct
     2401 tccccagtac caacgcaagg gctatggcag gtttctcatc gatttcagtt atttgttatc
     2461 aaagcgtgaa ggccaagcag ggtctccaga gaaaccgtta tccgatctag gtcgtctttc
     2521 ctacatggct tattggaaaa gtgtaatatt ggagtgcctt tatcaccaaa acgacaagca
     2581 aatcagcatt aagaagttaa gtaagttgac tggaatctgc cctcaagaca ttacttccac
     2641 actccaccac ctgcgaatgc tggacttccg gagtgaccaa tttgtgatta tccgccggga
     2701 aaaactgatc caagatcaca tggcaaagct tcagctgaat ctgcggcctg tggatgtaga
     2761 tccagagtgt ttgcgctgga ctcctgtcat agtctccaat tcagtcgtct cggaggagga
     2821 ggaagaggag gaggaagagg aggaggagga agaggaggag gaggaggagg aggaggaggg
     2881 agaacaggaa gagcctcaga gccaggaagg agaattagag acgagtgtgg ggaagtctgc
     2941 atctcgtgag aacaaagaac aagattctta ttcttcagta gaaagtgaaa agaaaccaga
     3001 agttacagca ccagccagtt ctacgcgttt gaacaaacag gtccttcccc gtgacagtct
     3061 tcctgccaat aatcagccat ctcggagagg ccgctggagg aggaagaaca gaaaagccca
     3121 ggagcgcttt ggtgatgagg attcaaaact gcttttggaa gagacatcag ctcctccgga
     3181 gcagtatgga gactgtgagg aaaaatcaga aacgtgccaa gaagagtaca cggaaggcca
     3241 ggagcagtcg gcagcctcgc aggagcagcc gagccaggac gcgaagccag atggtcccaa
     3301 aagaagaccg agtgaggggc tcgagctctg gcgaggaccg ctcaagaaaa gccctgagcc
     3361 tctgaagtgt gggctgccag aaagccacga caggctgccc cgtcgctaca gtgaaggtcg
     3421 ctacagcgat ggggacaggg ccctcctgcg gggctgcagc gagagcagcg aggaggaggg
     3481 ggagcccgag agcccgcggt ccagctcgcc cccggtcctc accaagccca cgctgaagcg
     3541 gaagaaacca attcttcacc gaagaaggcg agtccgaaag cgcaaacacc acaatagcag
     3601 tgtggtcaca gaaaccattt ctgagaccac ggaggtctta gacgagcctt ttgaagactc
     3661 tgactccgag aggccgatgc caagattaga acccacgttt gagattgacc aggaggaaga
     3721 ggaagaggat gagaacgagc tcttctctca agggtacttc cgtcacttgt cctcacagga
     3781 cgttctcagg tgtcgacccg cttctaagag gaagtctaaa gacagagacg aatacgaaga
     3841 ttcagatgat gctgatgaca ctcctatcct aaagccagta tctcttttga gaaaatgtga
     3901 tgtgaaggat tctccacttg agccagatac gtccacgccc atgaaaaaga agaagggatg
     3961 gcccaagggc aagagccgca aaccagtcca ctggaagaaa agacctggtc gcaagccggg
     4021 acttaagctg aatcgggagc tggcagccgt ttctactcga gaatgcgttg ttgagcctgt
     4081 tgtccctctt cctgagcctg gacgtgaacc ccaagttcaa gagaaccagg aagctgttgg
     4141 accacgagaa gacttgcctt taagggagga aaggaaggaa ggggaggagc tgcccctgga
     4201 agcggaggag ggggaggaag gagaggagga ggaggacacc accagcagtg acgtcagggc
     4261 agcctctccg gcggacagtt gcagccccga gaccggagcc aaggggcccg aggtgggcga
     4321 ggaggaggag gacccccgcg cccctgtggg gcagcagccg tcggaggagg ggccgcagga
     4381 cctggtgcag cgtgcacgtg aggaggagga ggaggaggag gaggaggacg ccgctgcgga
     4441 gacccagcag agcgaagacc gcgacgcgga tgatgaggat gacggccacc tggagtccac
     4501 agagaagaag gggccggagg agcagccagc tgggggcaac gtcaaggagg agcacagtgg
     4561 ccaggagtct tttttagatc ctgatgtgca cagcagtcgg gagcacgcaa aagacaagga
     4621 ggagacagag ccggattccg aagaggagca gacttcccac gaagcatccg tggtctcgga
     4681 gcacatgcca ggctctgagg acgaccacga ggaggactcc cactctaaag aagagctgct
     4741 gcagctgaaa gaggaggcgg agatccctca cagtgacctg gatctggaaa ccgtgcaggc
     4801 cgtgcagtct ttgactcagg aggagagcag cgagcatgag ggcgcctacc aggactgcga
     4861 ggaaaccctg gcggcctgtc agaccctgca gagctacacc caggccgacg aggacccgca
     4921 gctgcccctg gtggaggact gccacacctc ggagcacaac agcccgctgt cttctgtcca
     4981 gtcccacccc agccagtcgg tgcgctcggt cggcagtccc agcgtgcctg ccctcgaagg
     5041 gggctacacc cagatcagcc cggagcaagg atccctgtcc gcgccgtcta tgcagaacat
     5101 ggagaccagc cccatgatgg atgtgccttc cgtgtcggac cactcccagc aggtggtgga
     5161 cagcggcttc agcgacctgg gcagcatcga gagcaccacg gagaattatg agaaccccag
     5221 cagttacgac tccactatgg gcggcagcat ctgcgggaac agctcctccc agagcagctg
     5281 ctcctacggc ggcctgtcgt cctccagcag cctcacccag aacagctgcg tggtcaccca
     5341 gcagatggcc ggcgtgggcg gcagctgcag cctgatgcca cagagcagcg tcccgcccgc
     5401 cgccgccacc tgcagcatca agtcccctca gagctgcgca gtggagcggc ctcccagcac
     5461 ccagcagcca ccgccgcctc agccgccccc gcaagcgccg cccgccccgc cgccggcccc
     5521 gccgcccccg ccgccgccgc cggccccgca gccaccgcca ccgcccccgc agccccagcc
     5581 cccggccccg cccccgcagc agcagcagcc ctcgctgtcc cagtgcagca tgaacagcag
     5641 tttcacccca gcgcccatga tcatggagat cccagaatct ggaagcacgg ggaacatcag
     5701 catctacgag aggatccctg gggacttcgg ggccggcagc tactcccagc cgtcagccac
     5761 cttcagtcta gccaagttgc agcagctgac caacaccatt atggaccctc acgccatgcc
     5821 ttatagccat tctcctgctg tgacttccta tgcagccagt gtttctctgt ccaacacggg
     5881 actgcctcag ctggctccgt cacacccctt ggctggaacc cctcaagcac aagccaccat
     5941 gacgccgccc ccgaacttgg cctccactac catgaacctc acgtcccctc tgctgcagtg
     6001 caacatgtct gccaccaaca ttggcattcc ccacactcag aggctgcaag ggcagatgcc
     6061 agtcaagggg cacatctcca tccgctccaa gtccgcgccc ctgccctccg cggcagctca
     6121 ccagcagcag ctgtatggcc gcagcccacc tgcggtcgcc atgcaggctg gccctcgtgc
     6181 gttggctgtt cagcgtggca tgaacatggg ggttaatttg atgccaaccc ccgcctataa
     6241 tgtcaattcc atgaatatga acaccttgaa cgccatgaac agctatcgga tgacgcagcc
     6301 catgatgaac agcagttacc atagtaaccc tgcctacatg aaccagacag cacagtatcc
     6361 tatgcagatg cagatgggga tgatggggag ccaggcctat acccagcagc ctatgcagcc
     6421 aaaccctcat ggaaacatga tgtacacggg cccctcccat cacagctaca tgaacgctgc
     6481 tggcgtgccc aagcagtcac tcaacggacc ttacatgaga agatgagcaa gacgaacttg
     6541 cagttacaaa cttaaatata tataaataaa ggaacctttt atactgacaa accagagaaa
     6601 aatggacctt ttttccagtt aaaatattgc tgtagattta gaggaatttt tctttggttt
     6661 attttatttt ttagaaaacc tggtcttttt tggggggttc attttgttct gggttttggt
     6721 tttcttcaca atcttgaaca ttttacaata gaactcatct aaaaatggat ttggggatgg
     6781 ggaaacatgc acaaaaatct tttcataatt aaaaagagcc ttactttctt tacacaccac
     6841 atggacagac tttgtgtaag agtgaattat ctattttatt ttaagatgta tgtttcccct
     6901 cagtgtttgc agctcccaat gttgtcattt ttaaatgtta tatatacatc tcgagggtta
     6961 gccagaccct ttcctccaca cccagccttt cattccctac ttcattccag caggaggcac
     7021 ttatgggaga ctcggacggg gacatggaga acaacccaag ctccttaaac ttattattat
     7081 tgttaatatt attattatta ttaataaagt gaggcaggaa aatgcttctc ctcttaaaat
     7141 cccctccact ccctacagac acacacacat acacacacac acctcttgaa acctttcccc
     7201 aagaatgttt ctataagtga acttcattga aatgtttgtt tttcttaaat caagtgtaat
     7261 ataatttttt tttaaactac tcccactcag cactcagaga cacaaaaata ctgtaagtct
     7321 cagttaacag cggaatctca gaggaaagct gtttgcagtc ctaatccagc cttggaggaa
     7381 tagatggtca attaacaatc aaaaagaggc ataacctctt gttttttacc acctggtgaa
     7441 tcagccatac gcacatattc cacgcagcct cttgttttta gtatgtactt tgagatgcca
     7501 agggtcttga ttcttgagcc tttgactctg attaaactca aacagcagtc cccagtgatt
     7561 agcctcttac attctcacgt aaagggttgg tggatggctg tacatgtcaa tgatttgaga
     7621 aatacctgac taacctttgg cactgtttac tttgtgttgg aagagatgac gcagaatgtg
     7681 tgtcgtgagg gagatcgtgg tgtgagtttt atagctactt cagtgataca tacctctagt
     7741 tttcctttgt cttttgagat cctgagttcc tcccctgtga atcagagtgc gccagcccct
     7801 ctcctgtgag tggctgaaga gaagagggat taaaccaacc accagcatag tagggcaaat
     7861 ctggacagca gggtttcagc aggctcctgt gttgctccca gcttcattct cttttgtgca
     7921 gccagttcgc ccattctctt cttgttactt gctccaggga taggtaaaaa aaaaaatata
     7981 tatatatata tatatgtata tgtatataaa tatatatata tatacatata tacgttccat
     8041 cattagaaga tggagactat tataccactt ggtatgtgca gtcaaatatc caaaaggggg
     8101 aagtactgct taaagaaata tctgtaagca ttaaattctc tcctttattt gtacatttta
     8161 tatagataaa tttttgaagt acaaattagg cattaaattt tttcaaatgc acaggtttgt
     8221 tgggtttttt ttatacactt taattgactt tctcaattaa acgtgttagg tagaaaaagg
     8281 cagaattcca catcttaccg ctatcgattc tgagcatgtg caaggctgtg taggacccag
     8341 tttctctgta tatactgttc cagttcccag tcctctgtgt agaacgtgca ctgtgctgcc
     8401 ctctgcctac tcttcggcgc tgtcattgct tcctggttgg ggtgggacgg ggtgggtcgg
     8461 gagggaggga ggtgtattgg gaaggagggt gggtcaaggc aagaaggaga agctgttgaa
     8521 atgagggccg tgaattcagt ttctgttggt ttacggttgt gtttggtttg tttctttaaa
     8581 aaaaaaaaaa aatttcaatc aggcagctcc cttttccaca agcctttttg tgactttaga
     8641 actattgtag agaaaatgtt cttttctata ttataaaaga aattatccaa cacagtaata
     8701 ttggtacctg tcattttttc acttctgttt aaaaaaatgt attttagcaa gataactttg
     8761 ggtaatcttc taaaaaaaga aatttaaaaa ctcactgtta gtgactttga tgccttttaa
     8821 aataagagct ttttcatttc attccatctt taaaattttt tatctttgtt gtagaatatt
     8881 aaaaactatt ttaagaagat aaaaattctc tttaaagaga tctctagagt gtgtgaatag
     8941 agctccagat gcctctaaaa gccgcatgta caaatgaagc taagtctatt cctgtctgtt
     9001 tatatttgct tttcctgttt tgtaacctct ttgtactttg ttcatggtga ctcgtaagct
     9061 aaggggaagg ggtgcctaga tgcctttgta cttctccatg tcacgcgctc ctgggccagc
     9121 tggtctcctt cctctcctgt atgtaatatc actttttttt cccctttcta gcaagtactt
     9181 tcaaaagaac tctgtacatt ttaacataaa aaaaaataaa ttatgttgag gccatt
//
LOCUS       XM_032618506            9215 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus lysine acetyltransferase 6A (KAT6A),
            transcript variant X2, mRNA.
ACCESSION   XM_032618506
VERSION     XM_032618506.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9215
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9215
                     /gene="KAT6A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746792"
     CDS             455..6505
                     /gene="KAT6A"
                     /codon_start=1
                     /product="histone acetyltransferase KAT6A isoform X2"
                     /protein_id="XP_032474397.1"
                     /db_xref="GeneID:116746792"
                     /translation="MVKLANPLYTEWILEAIKKVKKQKQRPSEERICNAVSSSHGLDR
                     KTVLEQLELSVKDGTILKVSNKGLNSYKDPDNPGRIALPKPRNHGKVDNKQNVDWNKL
                     IKRAVEGLAESGGSTLKSIERFLKGQKDVSALFGGGAASGFHQQLRLAIKRAVGHGRL
                     LKDGPLYRLNTKATNVDGKESCESLSSLPPVSLLPHEKDKPVAEPIPICSFCLGTKDQ
                     NREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNAD
                     NMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPRKKGRKLLQKKAAQIKRRYANP
                     IGRPKNRSKGPFSKVRTGPGRGRKRKITLSSHSASSSEDGYLEQIDGLDFCRDGSVPL
                     KFNKKTKGLIDGLTKFFTPSPDGRKPRGEVVDYSEQYRVRKKGNRKSSTSDWPTDNQD
                     GWDGKQESEERLFGSQEVMTEKDMELFRDIQEQALQKVGVTGPPDPQVRCPSVIEFGK
                     YEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWFHPPANEIYRKN
                     NISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGCHLVGYF
                     SKEKHCQQKYNVSCIMILPQYQRKGYGRFLIDFSYLLSKREGQAGSPEKPLSDLGRLS
                     YMAYWKSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRMLDFRSDQFVIIR
                     REKLIQDHMAKLQLNLRPVDVDPECLRWTPVIVSNSVVSEEEEEEEEEEEEEEEEEEE
                     EEEGEQEEPQSQEGELETSVGKSASRENKEQDSYSSVESEKKPEVTAPASSTRLNKQV
                     LPRDSLPANNQPSRRGRWRRKNRKAQERFGDEDSKLLLEETSAPPEQYGDCEEKSETC
                     QEEYTEGQEQSAASQEQPSQDAKPDGPKRRPSEGLELWRGPLKKSPEPLKCGLPESHD
                     RLPRRYSEGRYSDGDRALLRGCSESSEEEGEPESPRSSSPPVLTKPTLKRKKPILHRR
                     RRVRKRKHHNSSVVTETISETTEVLDEPFEDSDSERPMPRLEPTFEIDQEEEEEDENE
                     LFSQGYFRHLSSQDVLRCRPASKRKSKDRDEYEDSDDADDTPILKPVSLLRKCDVKDS
                     PLEPDTSTPMKKKKGWPKGKSRKPVHWKKRPGRKPGLKLNRELAAVSTRECVVEPVVP
                     LPEPGREPQVQENQEAVGPREDLPLREERKEGEELPLEAEEGEEGEEEEDTTSSDVRA
                     ASPADSCSPETGAKGPEVGEEEEDPRAPVGQQPSEEGPQDLVQRAREEEEEEEEEDAA
                     AETQQSEDRDADDEDDGHLESTEKKGPEEQPAGGNVKEEHSGQESFLDPDVHSSREHA
                     KDKEETEPDSEEEQTSHEASVVSEHMPGSEDDHEEDSHSKEELLQLKEEAEIPHSDLD
                     LETVQAVQSLTQEESSEHEGAYQDCEETLAACQTLQSYTQADEDPQLPLVEDCHTSEH
                     NSPLSSVQSHPSQSVRSVGSPSVPALEGGYTQISPEQGSLSAPSMQNMETSPMMDVPS
                     VSDHSQQVVDSGFSDLGSIESTTENYENPSSYDSTMGGSICGNSSSQSSCSYGGLSSS
                     SSLTQNSCVVTQQMAGVGGSCSLMPQSSVPPAAATCSIKSPQSCAVERPPSTQQPPPP
                     QPPPQAPPAPPPAPPPPPPPPAPQPPPPPPQPQPPAPPPQQQQPSLSQCSMNSSFTPA
                     PMIMEIPESGSTGNISIYERIPGDFGAGSYSQPSATFSLAKLQQLTNTIMDPHAMPYS
                     HSPAVTSYAASVSLSNTGLPQLAPSHPLAGTPQAQATMTPPPNLASTTMNLTSPLLQC
                     NMSATNIGIPHTQRLQGQMPVKGHISIRSKSAPLPSAAAHQQQLYGRSPPAVAMQAGP
                     RALAVQRGMNMGVNLMPTPAYNVNSMNMNTLNAMNSYRMTQPMMNSSYHSNPAYMNQT
                     AQYPMQMQMGMMGSQAYTQQPMQPNPHGNMMYTGPSHHSYMNAAGVPKQSLNGPYMRR
                     "
     misc_feature    707..940
                     /gene="KAT6A"
                     /note="Domain in histone families 1 and 5; Region: H15;
                     smart00526"
                     /db_xref="CDD:197772"
     misc_feature    1067..1240
                     /gene="KAT6A"
                     /note="PHD finger 1 found in monocytic leukemia
                     zinc-finger protein (MOZ) and its factor (MORF); Region:
                     PHD1_MOZ_MORF; cd15618"
                     /db_xref="CDD:277090"
     misc_feature    order(1076..1078,1082..1087,1091..1093,1142..1144,
                     1157..1165,1178..1186,1223..1225,1229..1237)
                     /gene="KAT6A"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:277090"
     misc_feature    order(1184..1186,1196..1198,1205..1210,1217..1219,
                     1223..1228,1232..1234,1238..1240)
                     /gene="KAT6A"
                     /note="PHD2 interface [polypeptide binding]; other site"
                     /db_xref="CDD:277090"
     misc_feature    1244..1384
                     /gene="KAT6A"
                     /note="PHD finger 2 found in monocytic leukemia
                     zinc-finger protein (MOZ) and its factor (MORF); Region:
                     PHD2_KAT6A_6B; cd15527"
                     /db_xref="CDD:277002"
     misc_feature    order(1244..1246,1259..1261,1298..1312)
                     /gene="KAT6A"
                     /note="PHD1 interface [polypeptide binding]; other site"
                     /db_xref="CDD:277002"
     misc_feature    order(1280..1300,1307..1309,1352..1363)
                     /gene="KAT6A"
                     /note="histone H3 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:277002"
     misc_feature    <1940..2764
                     /gene="KAT6A"
                     /note="MYST -like histone acetyltransferase; Provisional;
                     Region: PLN00104"
                     /db_xref="CDD:215056"
ORIGIN      
        1 cccccgcggc tgttccaccg cctcgcctcc cctccccccg gccggagctc actgtctcca
       61 agatggcggc cgtgtcagtt tggggcatct ccgcggtccg gcccggggcc ccgcttaccc
      121 ggcgctcttc tcccccggca taagatgcac atttttctgc tgggaatgag atgttcttga
      181 gttcttacaa ctttatgaac agacccatgt gtggtgctat tgagaagttt gttgagaagt
      241 ttgaagatat ttcagataac aggttgtttt ggtttctaaa gtaaaagtgg ggaggcactc
      301 tgttttgtga aaggaggaag gactcaggcc agaaaacttg tatgctatgg ttaactggtt
      361 cccagcctcc gggaatgttg ttttccatgg tgtaaaactt actcagcatc aggataaggg
      421 ataacgactc tatggatata cagaatcctt caccatggta aaactcgcca acccgctgta
      481 tacggagtgg attttggagg ccatcaaaaa agtgaagaag caaaaacagc gtccttcaga
      541 agaaaggata tgcaatgcag tgtcttcatc ccatggcttg gatcgtaaaa ctgttttaga
      601 acaattggag ttgagtgtca aagatggaac aattttgaaa gtctcaaata aaggactcaa
      661 ttcctataaa gatcctgata atcctgggcg aatagcactt cctaaacctc gaaaccatgg
      721 aaaagtggat aataaacaaa acgtagactg gaataaactg atcaagcggg cagtcgaggg
      781 cttggcagag tccggtggct caactttgaa aagcattgaa cgttttttga aaggtcagaa
      841 ggatgtgtct gcattgtttg gaggcggtgc tgcctctggc tttcaccagc agttacgatt
      901 ggctattaaa cgcgccgttg gccacggcag actccttaaa gatggacctc tttatcggct
      961 caacactaaa gcaaccaatg tggatgggaa agagagttgt gagtctcttt cttctttacc
     1021 tccagtgtca ctccttccac atgaaaagga taagccagtt gctgaaccaa tccccatctg
     1081 tagtttctgt cttggtacaa aagaccaaaa ccgagaaaag aagccagagg aactaatctc
     1141 ctgtgcagac tgcggcaaca gtggtcatcc atcctgttta aagttttccc ctgagctaac
     1201 ggttagagtg aaggccttac ggtggcagtg catcgagtgt aaaacgtgca gctcctgtcg
     1261 agatcaaggc aaaaatgcag ataacatgct cttttgtgat tcctgtgacc gaggttttca
     1321 catggagtgt tgtgatccgc cactcacccg gatgccaaaa ggcatgtgga tatgtcagat
     1381 atgtcgacct aggaaaaaag gacgaaaact tctacagaag aaggcggcac agataaaacg
     1441 gcgctatgct aatccaatag gacgtccaaa aaacaggtca aaaggtccct tcagcaaagt
     1501 tcgaacaggc cctggaaggg gtcggaaacg taaaatcact ctctccagcc attcagcatc
     1561 gtcatcagaa gacggatatc tagagcaaat agatggcttg gacttctgca gagacggcag
     1621 cgtccccttg aagttcaata agaaaaccaa agggctcatc gatggcctta ccaaattctt
     1681 taccccttcc cctgatgggc ggaaacctcg aggggaggtg gtggactact ctgagcaata
     1741 tagagtcagg aaaaagggca acagaaaatc aagcacttca gattggccca cagacaatca
     1801 ggatggctgg gacggcaaac aagaaagtga ggaacggctt tttgggagcc aggaagtcat
     1861 gacagagaaa gatatggaat tatttcgtga tatccaagaa caagcactgc agaaagttgg
     1921 agtgaccggt ccccctgatc cacaagtccg ctgtccctct gttattgagt ttgggaagta
     1981 tgaaatccac acctggtact cttctccata tcctcaagaa tactcaaggc tgcctaagtt
     2041 gtatctctgt gaattctgtc taaaatatat gaaaagtaga actattctac agcagcacat
     2101 gaagaaatgt ggttggttcc atcctcctgc taatgagatt tatagaaaga ataacatttc
     2161 tgtctttgag gttgatggga atgtgagtac catttattgt cagaacctgt gtctcttggc
     2221 aaaattgttt cttgaccaca aaacactcta ttatgatgtg gagccatttc ttttttatgt
     2281 actaacccag aatgatgtca agggctgcca ccttgttggc tatttttcta aagaaaagca
     2341 ctgccaacag aagtacaacg tttcctgtat aatgattctt ccccagtacc aacgcaaggg
     2401 ctatggcagg tttctcatcg atttcagtta tttgttatca aagcgtgaag gccaagcagg
     2461 gtctccagag aaaccgttat ccgatctagg tcgtctttcc tacatggctt attggaaaag
     2521 tgtaatattg gagtgccttt atcaccaaaa cgacaagcaa atcagcatta agaagttaag
     2581 taagttgact ggaatctgcc ctcaagacat tacttccaca ctccaccacc tgcgaatgct
     2641 ggacttccgg agtgaccaat ttgtgattat ccgccgggaa aaactgatcc aagatcacat
     2701 ggcaaagctt cagctgaatc tgcggcctgt ggatgtagat ccagagtgtt tgcgctggac
     2761 tcctgtcata gtctccaatt cagtcgtctc ggaggaggag gaagaggagg aggaagagga
     2821 ggaggaggaa gaggaggagg aggaggagga ggaggaggga gaacaggaag agcctcagag
     2881 ccaggaagga gaattagaga cgagtgtggg gaagtctgca tctcgtgaga acaaagaaca
     2941 agattcttat tcttcagtag aaagtgaaaa gaaaccagaa gttacagcac cagccagttc
     3001 tacgcgtttg aacaaacagg tccttccccg tgacagtctt cctgccaata atcagccatc
     3061 tcggagaggc cgctggagga ggaagaacag aaaagcccag gagcgctttg gtgatgagga
     3121 ttcaaaactg cttttggaag agacatcagc tcctccggag cagtatggag actgtgagga
     3181 aaaatcagaa acgtgccaag aagagtacac ggaaggccag gagcagtcgg cagcctcgca
     3241 ggagcagccg agccaggacg cgaagccaga tggtcccaaa agaagaccga gtgaggggct
     3301 cgagctctgg cgaggaccgc tcaagaaaag ccctgagcct ctgaagtgtg ggctgccaga
     3361 aagccacgac aggctgcccc gtcgctacag tgaaggtcgc tacagcgatg gggacagggc
     3421 cctcctgcgg ggctgcagcg agagcagcga ggaggagggg gagcccgaga gcccgcggtc
     3481 cagctcgccc ccggtcctca ccaagcccac gctgaagcgg aagaaaccaa ttcttcaccg
     3541 aagaaggcga gtccgaaagc gcaaacacca caatagcagt gtggtcacag aaaccatttc
     3601 tgagaccacg gaggtcttag acgagccttt tgaagactct gactccgaga ggccgatgcc
     3661 aagattagaa cccacgtttg agattgacca ggaggaagag gaagaggatg agaacgagct
     3721 cttctctcaa gggtacttcc gtcacttgtc ctcacaggac gttctcaggt gtcgacccgc
     3781 ttctaagagg aagtctaaag acagagacga atacgaagat tcagatgatg ctgatgacac
     3841 tcctatccta aagccagtat ctcttttgag aaaatgtgat gtgaaggatt ctccacttga
     3901 gccagatacg tccacgccca tgaaaaagaa gaagggatgg cccaagggca agagccgcaa
     3961 accagtccac tggaagaaaa gacctggtcg caagccggga cttaagctga atcgggagct
     4021 ggcagccgtt tctactcgag aatgcgttgt tgagcctgtt gtccctcttc ctgagcctgg
     4081 acgtgaaccc caagttcaag agaaccagga agctgttgga ccacgagaag acttgccttt
     4141 aagggaggaa aggaaggaag gggaggagct gcccctggaa gcggaggagg gggaggaagg
     4201 agaggaggag gaggacacca ccagcagtga cgtcagggca gcctctccgg cggacagttg
     4261 cagccccgag accggagcca aggggcccga ggtgggcgag gaggaggagg acccccgcgc
     4321 ccctgtgggg cagcagccgt cggaggaggg gccgcaggac ctggtgcagc gtgcacgtga
     4381 ggaggaggag gaggaggagg aggaggacgc cgctgcggag acccagcaga gcgaagaccg
     4441 cgacgcggat gatgaggatg acggccacct ggagtccaca gagaagaagg ggccggagga
     4501 gcagccagct gggggcaacg tcaaggagga gcacagtggc caggagtctt ttttagatcc
     4561 tgatgtgcac agcagtcggg agcacgcaaa agacaaggag gagacagagc cggattccga
     4621 agaggagcag acttcccacg aagcatccgt ggtctcggag cacatgccag gctctgagga
     4681 cgaccacgag gaggactccc actctaaaga agagctgctg cagctgaaag aggaggcgga
     4741 gatccctcac agtgacctgg atctggaaac cgtgcaggcc gtgcagtctt tgactcagga
     4801 ggagagcagc gagcatgagg gcgcctacca ggactgcgag gaaaccctgg cggcctgtca
     4861 gaccctgcag agctacaccc aggccgacga ggacccgcag ctgcccctgg tggaggactg
     4921 ccacacctcg gagcacaaca gcccgctgtc ttctgtccag tcccacccca gccagtcggt
     4981 gcgctcggtc ggcagtccca gcgtgcctgc cctcgaaggg ggctacaccc agatcagccc
     5041 ggagcaagga tccctgtccg cgccgtctat gcagaacatg gagaccagcc ccatgatgga
     5101 tgtgccttcc gtgtcggacc actcccagca ggtggtggac agcggcttca gcgacctggg
     5161 cagcatcgag agcaccacgg agaattatga gaaccccagc agttacgact ccactatggg
     5221 cggcagcatc tgcgggaaca gctcctccca gagcagctgc tcctacggcg gcctgtcgtc
     5281 ctccagcagc ctcacccaga acagctgcgt ggtcacccag cagatggccg gcgtgggcgg
     5341 cagctgcagc ctgatgccac agagcagcgt cccgcccgcc gccgccacct gcagcatcaa
     5401 gtcccctcag agctgcgcag tggagcggcc tcccagcacc cagcagccac cgccgcctca
     5461 gccgcccccg caagcgccgc ccgccccgcc gccggccccg ccgcccccgc cgccgccgcc
     5521 ggccccgcag ccaccgccac cgcccccgca gccccagccc ccggccccgc ccccgcagca
     5581 gcagcagccc tcgctgtccc agtgcagcat gaacagcagt ttcaccccag cgcccatgat
     5641 catggagatc ccagaatctg gaagcacggg gaacatcagc atctacgaga ggatccctgg
     5701 ggacttcggg gccggcagct actcccagcc gtcagccacc ttcagtctag ccaagttgca
     5761 gcagctgacc aacaccatta tggaccctca cgccatgcct tatagccatt ctcctgctgt
     5821 gacttcctat gcagccagtg tttctctgtc caacacggga ctgcctcagc tggctccgtc
     5881 acaccccttg gctggaaccc ctcaagcaca agccaccatg acgccgcccc cgaacttggc
     5941 ctccactacc atgaacctca cgtcccctct gctgcagtgc aacatgtctg ccaccaacat
     6001 tggcattccc cacactcaga ggctgcaagg gcagatgcca gtcaaggggc acatctccat
     6061 ccgctccaag tccgcgcccc tgccctccgc ggcagctcac cagcagcagc tgtatggccg
     6121 cagcccacct gcggtcgcca tgcaggctgg ccctcgtgcg ttggctgttc agcgtggcat
     6181 gaacatgggg gttaatttga tgccaacccc cgcctataat gtcaattcca tgaatatgaa
     6241 caccttgaac gccatgaaca gctatcggat gacgcagccc atgatgaaca gcagttacca
     6301 tagtaaccct gcctacatga accagacagc acagtatcct atgcagatgc agatggggat
     6361 gatggggagc caggcctata cccagcagcc tatgcagcca aaccctcatg gaaacatgat
     6421 gtacacgggc ccctcccatc acagctacat gaacgctgct ggcgtgccca agcagtcact
     6481 caacggacct tacatgagaa gatgagcaag acgaacttgc agttacaaac ttaaatatat
     6541 ataaataaag gaacctttta tactgacaaa ccagagaaaa atggaccttt tttccagtta
     6601 aaatattgct gtagatttag aggaattttt ctttggttta ttttattttt tagaaaacct
     6661 ggtctttttt ggggggttca ttttgttctg ggttttggtt ttcttcacaa tcttgaacat
     6721 tttacaatag aactcatcta aaaatggatt tggggatggg gaaacatgca caaaaatctt
     6781 ttcataatta aaaagagcct tactttcttt acacaccaca tggacagact ttgtgtaaga
     6841 gtgaattatc tattttattt taagatgtat gtttcccctc agtgtttgca gctcccaatg
     6901 ttgtcatttt taaatgttat atatacatct cgagggttag ccagaccctt tcctccacac
     6961 ccagcctttc attccctact tcattccagc aggaggcact tatgggagac tcggacgggg
     7021 acatggagaa caacccaagc tccttaaact tattattatt gttaatatta ttattattat
     7081 taataaagtg aggcaggaaa atgcttctcc tcttaaaatc ccctccactc cctacagaca
     7141 cacacacata cacacacaca cctcttgaaa cctttcccca agaatgtttc tataagtgaa
     7201 cttcattgaa atgtttgttt ttcttaaatc aagtgtaata taattttttt ttaaactact
     7261 cccactcagc actcagagac acaaaaatac tgtaagtctc agttaacagc ggaatctcag
     7321 aggaaagctg tttgcagtcc taatccagcc ttggaggaat agatggtcaa ttaacaatca
     7381 aaaagaggca taacctcttg ttttttacca cctggtgaat cagccatacg cacatattcc
     7441 acgcagcctc ttgtttttag tatgtacttt gagatgccaa gggtcttgat tcttgagcct
     7501 ttgactctga ttaaactcaa acagcagtcc ccagtgatta gcctcttaca ttctcacgta
     7561 aagggttggt ggatggctgt acatgtcaat gatttgagaa atacctgact aacctttggc
     7621 actgtttact ttgtgttgga agagatgacg cagaatgtgt gtcgtgaggg agatcgtggt
     7681 gtgagtttta tagctacttc agtgatacat acctctagtt ttcctttgtc ttttgagatc
     7741 ctgagttcct cccctgtgaa tcagagtgcg ccagcccctc tcctgtgagt ggctgaagag
     7801 aagagggatt aaaccaacca ccagcatagt agggcaaatc tggacagcag ggtttcagca
     7861 ggctcctgtg ttgctcccag cttcattctc ttttgtgcag ccagttcgcc cattctcttc
     7921 ttgttacttg ctccagggat aggtaaaaaa aaaaatatat atatatatat atatgtatat
     7981 gtatataaat atatatatat atacatatat acgttccatc attagaagat ggagactatt
     8041 ataccacttg gtatgtgcag tcaaatatcc aaaaggggga agtactgctt aaagaaatat
     8101 ctgtaagcat taaattctct cctttatttg tacattttat atagataaat ttttgaagta
     8161 caaattaggc attaaatttt ttcaaatgca caggtttgtt gggttttttt tatacacttt
     8221 aattgacttt ctcaattaaa cgtgttaggt agaaaaaggc agaattccac atcttaccgc
     8281 tatcgattct gagcatgtgc aaggctgtgt aggacccagt ttctctgtat atactgttcc
     8341 agttcccagt cctctgtgta gaacgtgcac tgtgctgccc tctgcctact cttcggcgct
     8401 gtcattgctt cctggttggg gtgggacggg gtgggtcggg agggagggag gtgtattggg
     8461 aaggagggtg ggtcaaggca agaaggagaa gctgttgaaa tgagggccgt gaattcagtt
     8521 tctgttggtt tacggttgtg tttggtttgt ttctttaaaa aaaaaaaaaa atttcaatca
     8581 ggcagctccc ttttccacaa gcctttttgt gactttagaa ctattgtaga gaaaatgttc
     8641 ttttctatat tataaaagaa attatccaac acagtaatat tggtacctgt cattttttca
     8701 cttctgttta aaaaaatgta ttttagcaag ataactttgg gtaatcttct aaaaaaagaa
     8761 atttaaaaac tcactgttag tgactttgat gccttttaaa ataagagctt tttcatttca
     8821 ttccatcttt aaaatttttt atctttgttg tagaatatta aaaactattt taagaagata
     8881 aaaattctct ttaaagagat ctctagagtg tgtgaataga gctccagatg cctctaaaag
     8941 ccgcatgtac aaatgaagct aagtctattc ctgtctgttt atatttgctt ttcctgtttt
     9001 gtaacctctt tgtactttgt tcatggtgac tcgtaagcta aggggaaggg gtgcctagat
     9061 gcctttgtac ttctccatgt cacgcgctcc tgggccagct ggtctccttc ctctcctgta
     9121 tgtaatatca cttttttttc ccctttctag caagtacttt caaaagaact ctgtacattt
     9181 taacataaaa aaaaataaat tatgttgagg ccatt
//
LOCUS       XM_032618507            2067 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus aspartylglucosaminidase (AGA), mRNA.
ACCESSION   XM_032618507
VERSION     XM_032618507.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2067
                     /gene="AGA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746793"
     CDS             68..1111
                     /gene="AGA"
                     /codon_start=1
                     /product="N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase"
                     /protein_id="XP_032474398.1"
                     /db_xref="GeneID:116746793"
                     /translation="MARKPSHRLLLLSLLLLCRAPVCSSGPLPLILNTWPFRNAAVAA
                     WRTLASGGSALDAVESGCAACEREQCDGTVGFGGSPDESGETTLDAMIMDGTTMNVGA
                     VGDLRRIKNAIGVARKVLEHTTHTLLAGESATKFAESMGFINEDLSTNASCALHSDWL
                     AWNCQPNYWRNVIPDASKYCGPYKPPSILKRDGSTYKETGDSYGHDTIGMVVIHKMGN
                     IAAGTSTNGIKFKIPGRIGDSPIPGSGAYADDTAGAAAATGDGDILMRFLPSYQAVEY
                     MRRGEDPTTACRKVISRIQKYFPNFFGAVVCANVTGSYGAACNKLSTFTQFHFMVYNP
                     LKSEPAEEKVDCI"
     misc_feature    155..1066
                     /gene="AGA"
                     /note="Glycosylasparaginase and similar proteins; Region:
                     Glycosylasparaginase; cd04513"
                     /db_xref="CDD:271335"
     misc_feature    order(359..367,380..382,440..454,458..463,470..475,
                     764..775,788..796,806..808,851..853,860..862,878..880,
                     890..892,944..946)
                     /gene="AGA"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:271335"
ORIGIN      
        1 gcggaagtac gggggcccgg gcggccgtgg gcttcgtcgg ggttattctt ggcggcggcg
       61 cgtggccatg gcgcggaagc ctagccaccg gctgctgctg ctttcgctgc tgctgctctg
      121 ccgggccccg gtgtgcagct ccggccctct gcccctgatc ctcaacactt ggcctttcag
      181 gaatgcagcc gtagcagcat ggaggacgtt agcatctgga gggtctgcgc tggacgcggt
      241 tgagagcggc tgtgcggcgt gtgaacggga gcagtgtgac ggcaccgtgg gctttggcgg
      301 cagccctgac gagtctggag agaccaccct ggatgccatg atcatggacg gtactaccat
      361 gaacgtagga gcagtgggag atcttagacg aattaaaaat gccatcggtg tagcacgaaa
      421 agtactggaa cacacgacac acacactgtt agcaggagag tcagccacca agtttgccga
      481 aagcatgggg tttatcaacg aggatttatc taccaacgct tcgtgtgctc ttcattcaga
      541 ttggctggcc tggaattgcc agccaaatta ctggaggaat gttataccag atgcttcaaa
      601 atactgtgga ccctacaaac cacctagtat cttaaagcga gatggttcta cttacaaaga
      661 aacaggagac agttacggtc atgatactat tggcatggtt gtcatccata agatgggaaa
      721 tattgctgct ggtacatcta caaatggtat aaaattcaaa atacctggtc gaataggaga
      781 ctcgccaata cctggatctg gggcctacgc cgacgacact gcaggggctg cagcagccac
      841 cggggacggc gacatactga tgcgcttcct cccaagctac caagctgtag aatacatgag
      901 aagaggagaa gatcccacca cagcatgccg gaaagtgatt tcaagaatcc agaagtattt
      961 ccccaacttc ttcggggctg tggtatgtgc taacgtgact ggaagttatg gtgctgcctg
     1021 caataaactt tcaacattta ctcagtttca tttcatggtt tacaatcctc taaaaagtga
     1081 gccagctgag gaaaaagtag actgcatcta atccatcttt tctgtccaca tctctattta
     1141 aagaagaaag aaacagaggc tgaaaaggct gctcactgtc atcgtataac gtgcctcatg
     1201 tattctaaaa ttctttgtgt aaaataagca caaaaatttt atgctagaag agcattttca
     1261 ctttctatat ctgaaaaatt tttcttatct ttttttattt aagctttgta tatcccctga
     1321 aaatatttgt gtgtatgtat tttgtatatg tttaaatttt gagtgatatt tggatttctg
     1381 ctcagtgttt caagaaattg ctactttggg gatttatttc cataaataaa tgatacagta
     1441 aagtgatata gtaaagccac aagaaataat ctatatttgg atacttaaaa taatttgagt
     1501 aaacaagcat tttagaccca aagaaaaagg taacaatgag tcacagcata agtcctgact
     1561 gaatctcagt accttagagt aatatgtctc ttatcgctga ttatcagttg tacataatgc
     1621 tctcttctag cttgaagagg aaagaatgct gttaatcata aaggtgcgtt ttgtttagca
     1681 catattagaa actgtgggcc gtcttctgac gagcaactgt gttgattttc ttgggcttct
     1741 tcctctgatg gtgcgctctc agtgtgtgaa ggtttttagc caccaaaaaa atctctgacc
     1801 ttttagctac aaatatttag tattgataat ttcttccgaa aatgatttag ggaacttgat
     1861 ctgtactgtg gttttactaa tctcttgtgc acgtgttggt ggtttgaatt agcagtgagt
     1921 cagtaaccct cgtctgcctt gttttttctg agcgctcggt cagccgtctg cggactagac
     1981 aggactgtaa gtgcgctttc tcaggatcat ctttgcttca ttaccttcct tttacatcag
     2041 gagtcattaa taaaactgta tgtacaa
//
LOCUS       XR_004347875             721 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746794
            (LOC116746794), transcript variant X1, ncRNA.
ACCESSION   XR_004347875
VERSION     XR_004347875.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..721
                     /gene="LOC116746794"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746794"
     ncRNA           1..721
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746794"
                     /product="uncharacterized LOC116746794, transcript variant
                     X1"
                     /db_xref="GeneID:116746794"
ORIGIN      
        1 taccgtcttt cttaagtcta cggagatttt tttttttttg ctagtcaacc gaaagttagt
       61 atgaaattgc tcggccttgg cttacacggc cctgggagct ttcaagtttg attttaacgt
      121 gttaggctct tattaaaagt tgaagtcgct aagtttgcga agctcacagt gtgctccgtg
      181 gggtgcctgg ccgcagagat ccgggatggt ttttgagggg cgcctcctaa ccggatacgc
      241 ttacctaggt gaaaagttct ccaccgcggc cactgtagct caggaatatc cttgatgagt
      301 ttaacctgcc tgttcagcct gaaaacaaac tttgattcac ctgaggctcc acacgggacc
      361 cagtccagct caagtcagtc ccagtccgac cccagaccca gtctggtttc taagtcggac
      421 ccagcctgac tccgaccagt ttctggaccc agtacggaca aagaagtgct cacatgaagt
      481 ctgaaagctc agactaggat ccgggggact cgcgcatgac ctccagagcc ggcagggaag
      541 cgtgagctca gggctcagca gtgatatttt agctgtatgg aaattgcagt gcctcctacc
      601 atatcgaaca gatccaagat tatttacaga tatgagccaa caaacaacag tagatattga
      661 acgttattcc gacagtgact tcatttcctt cacgtgaggg cggaaagtgg tggcatctta
      721 g
//
LOCUS       XR_004347876            1358 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746794
            (LOC116746794), transcript variant X2, ncRNA.
ACCESSION   XR_004347876
VERSION     XR_004347876.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1358
                     /gene="LOC116746794"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746794"
     ncRNA           1..1358
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746794"
                     /product="uncharacterized LOC116746794, transcript variant
                     X2"
                     /db_xref="GeneID:116746794"
ORIGIN      
        1 taccgtcttt cttaagtcta cggagatttt tttttttttg ctagtcaacc gaaagttagt
       61 atgaaattgc tcggccttgg cttacacggc cctgggagct ttcaagtttg attttaacgt
      121 gttaggctct tattaaaagt tgaagtcgct aagtttgcga agctcacagt gtgctccgtg
      181 gggtgcctgg ccgcagagat ccgggatggt ttttgagggg cgcctcctaa ccggatacgc
      241 ttacctaggt gaaaagttct ccaccgcggc cactgtagct caggaatatc cttgatgagt
      301 ttaacctgcc tgttcagcct gaaaacaaac tttgattcac ctgaggctcc acacgggacc
      361 cagtccagct caagtcagtc ccagtccgac cccagaccca gtctggtttc taagtcggac
      421 ccagcctgac tccgaccagt ttctggaccc agtacggaca aagaagtgct cacatgaagt
      481 ctgaaagctc agactaggat ccgggggact cgcgcatgac ctccagagcc ggcagggaag
      541 cgtgagctca gggctcagca gttaccctct tgttgaaatc ttttggtatt tataatctga
      601 ttcactgcgg ctcagaaata ttcatcttct tccaaaatgc ttgtgaaaag aaaagcagca
      661 catgggaact ggacacagac atggctgccc atgaagtact caaatcgatg aagactaaca
      721 taaaatgata taataataca aatgaaggct ctggagtgaa taattttaat ttccatctct
      781 gctaacactg aagcgatcat agggattaag aatggctgcc actcaacagt ccattaaggc
      841 ctctcattag taggttaaag ggttaagact tgattaaaaa aaaaagatac accagtcaag
      901 ttcaagggac ggaaggaaat gaaatggaaa tgggttacta ggtgaataca gcatttcaca
      961 gagcagacgt tttataaata taagttgtgt aattgtatga aagagcctga agtcttggct
     1021 tactttttgc tctaaattaa tattaaaatt ttatactatt attattaatg ttcttcacag
     1081 gttgagttgt atctgccttt agcagtagaa caacccacat ttcctgagcc tcttctataa
     1141 ttcacatatg aagaattaaa cgtgtgtgtg tgtaattaca ggtgtgtgga gaggctggtg
     1201 gtattcaatt tttacctgtt tccaactcaa acagctgatt gcagagatta attttcagtt
     1261 gattttacat tacatgagga tgcagagtaa tgccaggctt aagtttttga aaggaggaaa
     1321 tctgcttttt ctagaagaat tatattcagc aagatgaa
//
LOCUS       XM_032618508            2049 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus XK related 5 (XKR5), mRNA.
ACCESSION   XM_032618508
VERSION     XM_032618508.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2049
                     /gene="XKR5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 20% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746796"
     CDS             1..2049
                     /gene="XKR5"
                     /codon_start=1
                     /product="XK-related protein 5"
                     /protein_id="XP_032474399.1"
                     /db_xref="GeneID:116746796"
                     /translation="MHAGVLGLSALLLAAEQSARLCTVVYYFTTGQLLWGWLALSVLL
                     PGFLVQGLSYLWFREDGHQSHCSLVVLHLLQLGVWKRHWDAVAPVLRKEGEASAWGQL
                     RMQEADLSALRLLEALLQVGPHLLLQTYVFLTSDFTGIVPGMSALCSWSVLSWALVCY
                     ARAMGAMKPGHLSMPWTALGCQLLWRMGMVGARVLSLVLFFQVYRVWVLVVAGAHWLV
                     MTFWLVAQQSDIVDSTCRWRLFNLLMGAVYILCYLDFWDSPSRSRMATFYTVMLLENT
                     VLVLLATDFLQGVSRTSLWTVAGVLSGFLIGSVSLVIYYSLLHPKSTDIWQGFVRKSC
                     GIAGGDKAEGDSPPRASGPAGEGPESLGTCQEESDVLTSLGKPPSPQWGPPQAGMESQ
                     MAGEASFLSHHHWLLVKLALKTGNVSKINALLGEDNPGFFCSLPWGLSQHCNQERKPP
                     SSQQEPPSSPRKPLTSEEGSELRVVPRAEADETSNYVSFASDSRDKTPAQKPSAMQQE
                     GSPKEGDGAASGVQGRGAGWWLGGGEGQESSTLYFSATTEGAMSSHQDGGRATLTTSL
                     SGRRLGEGSLARPASPLPATKPFPATMANISPILGTGPGRSFHPSGRALGGSGHGGQQ
                     ESTRDQNHSATDGTQMPWPKVSPRPSVEPCLTSTPKSESTHRDSSWRERLKTETSFFI
                     "
     misc_feature    46..960
                     /gene="XKR5"
                     /note="XK-related protein; Region: XK-related; pfam09815"
                     /db_xref="CDD:462912"
ORIGIN      
        1 atgcacgcgg gggtcctggg cctctccgcc ctgctgctgg cggccgagca gagcgcgcgc
       61 ctctgcaccg tggtttacta cttcaccaca ggccagctcc tctgggggtg gctggccctc
      121 tctgtgctac tacctggctt cttggtccag ggcctgagct acctttggtt ccgagaagat
      181 ggacatcaaa gtcactgctc gttggtggtg ctacacctcc tccagcttgg cgtgtggaag
      241 cggcactggg acgccgtggc ccctgttctc cggaaggaag gggaggcctc cgcctggggc
      301 cagctgcgga tgcaggaggc cgacctgtcg gccctgcgcc tcctggaagc cctgctgcag
      361 gtcgggcccc acctgctgct tcaaacatac gtctttctca cctcggactt cactggtatc
      421 gtgccgggga tgagtgcgct gtgctcctgg tctgtgctgt cctgggccct ggtgtgctat
      481 gctcgtgcca tgggcgccat gaagccgggt cacctctcca tgccgtggac ggccctcggc
      541 tgccagctgc tctggaggat gggcatggtg ggagcccgcg ttctgagtct ggttctgttc
      601 ttccaagttt accgcgtctg ggttctggtt gttgcaggtg cccactggct ggtgatgacg
      661 ttctggctcg tggctcagca gagtgacatc gtggacagca cctgccgctg gaggctgttc
      721 aacctgctca tgggtgccgt gtacatcctc tgctacctcg acttctggga cagcccttcc
      781 cgaagccgga tggccacgtt ctacacggtc atgctgcttg agaataccgt cctcgtgctg
      841 ctggccacgg attttctcca gggagtgtcg cggaccagcc tgtggacggt agccggagtc
      901 ttgtctggat ttctgatcgg cagcgtctcg ctggtcattt attacagcct gctacaccct
      961 aaatccacag acatctggca gggctttgta aggaagtcct gtggcattgc agggggtgat
     1021 aaagcagagg gagactctcc tccccgggcc tcggggccag ctggtgaggg gccggagagc
     1081 ctggggacct gccaagagga aagtgatgtg ctaacaagcc tggggaagcc ccccagccca
     1141 cagtggggtc ccccacaggc tgggatggaa agccagatgg ctggggaggc ctctttcctc
     1201 agccatcacc actggctgtt ggtgaaactt gccctgaaaa cgggaaatgt gtcaaagatc
     1261 aacgcactcc ttggagaaga caatcctggc ttcttttgtt cccttccatg ggggttgagc
     1321 caacactgca accaggagag gaagcccccg tcctcccagc aagagccccc atcgtcaccc
     1381 cgcaaacccc taacctcaga ggaaggctct gagcttcgag ttgtccccag agcagaggct
     1441 gacgaaactt caaattacgt ctcttttgcc agcgatagtc gtgacaaaac tcctgcccag
     1501 aagccgtcag ctatgcagca ggagggcagc ccgaaggagg gagacggggc tgcttctggg
     1561 gtgcagggga ggggtgcagg ttggtggctg ggtggagggg aaggacagga gagctccaca
     1621 ctctacttca gtgccaccac tgaaggggcc atgtcctcac accaagacgg tgggagggca
     1681 actctgacga cgtccctctc tgggaggaga ttgggggagg gcagccttgc ccggcctgcc
     1741 tcacctctgc cggccaccaa gccttttccc gccaccatgg ccaacatcag cccgatctta
     1801 ggcaccggcc caggtagaag cttccatcct agtggcagag ccctgggtgg ctcagggcat
     1861 gggggtcagc aggaatccac gagggaccag aaccattctg ccactgatgg cacacagatg
     1921 ccatggccga aggtgagccc gaggccctct gtggagccct gcctcacgtc cacccccaag
     1981 tctgagtcca cccacaggga cagcagctgg agggaaaggc tgaagaccga gacaagtttc
     2041 ttcatctga
//
LOCUS       XM_032618509            7789 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin 1 (ANK1), transcript variant X1,
            mRNA.
ACCESSION   XM_032618509
VERSION     XM_032618509.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7789
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7789
                     /gene="ANK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746797"
     CDS             36..5561
                     /gene="ANK1"
                     /codon_start=1
                     /product="ankyrin-1 isoform X1"
                     /protein_id="XP_032474400.1"
                     /db_xref="GeneID:116746797"
                     /translation="MAARPRRSGPDAAADAATSFLRAARSGNLDKALDHLRNGVDINT
                     CNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDQVVRELV
                     NYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGH
                     ENVVAHLINYGTRGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAA
                     HYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDE
                     LTPLHCAARNGHLRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAE
                     IDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVME
                     LLLKTGASIDAVTESGLTPLHVASFMGHLPIVKSLLQREASPNVSNVKVETPLHMAAR
                     AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENDANPNLATTAGH
                     TPLHIAAREGHVETALALLEKEASQACMTKKGFTPLHVAAKYGKVRVAQLLLEHDAHP
                     DAAGKNGLTPLHVAVHHNHLDIVKLLLPRGSSPHSLAWNGYTPLHIAAKQNQMEVAHN
                     LLQYGGSANAESMQGVTPLHLAAQEGHADMVALLLSKQANGNLGNKSGLTPLHLVAQE
                     GHVQVADVLIKHGVTVDATTRMGYTPLHVASHYGNIRLVKFLLQHQADVNAKTKLGYS
                     PLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETS
                     VALVSDKHRMSFPETVDEILDVSEDEGEELVGFKAEKQDSRDIDEEKELLDFVPKLDQ
                     VVESPAIPRIPCVTPETVVIRSEEPEQASKEYDEDSLIPSSPATETSDNISPVASPVH
                     TGFLVSFMVDARGGSMRGSRHNGLRVVVPPRTCAAPTRITCRLVKPQKLPTPPPLAEE
                     EGLASRVIALGPTGVQFLSPVIVEVPHFASQGRGDRELVVLRSENGSVWKEHKNRYGE
                     SYLDQILNGMDEELGSLEELEKKRVCRIVTTDFPLYFVIMSRLYQDYDTIGPEGGSLK
                     STLVPLVQATFPENAVTKKVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFH
                     RPIGLRVPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLMYANEC
                     ATFTTNVSARFWLSDCPRTAEAVNFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRC
                     YCMTTDDRVDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPIKKAAQQRSFLF
                     QSFRESRLAIPVKVRDSSRDPAGSLSFLRKAMKYEDTQHILCHLNVTMPPCTKGSGAD
                     DRRRTLTPLALRYSILSESTLGFLSGADRADMKMAIISEHLGLSWAELARELQFSVDD
                     INRIRVENPNSLLEQSVALLNLWVIREGQDAKMENLYAALRHIDRGEIVNMLEGSGRQ
                     GRNLKPDRRPTDRDYSSYPSQMNGYSSLQDELLSPASLHYALPSPLRADQYWNEVAVL
                     DAIPLAGTEHDAMLEMSDMQVWSAGLTPSLVTAEDSSLECSKAEDSDATGHEWKLEGA
                     LSEGPQGPMLGSLDLVEDDTVDSDAANGLIDLLDQEEGQQRVQAHITESHTVSRVMDS
                     SQDRLQDWDAEGSIVSYLQEATQGSWGEEALQGPHLFQRTVSRSWEHEEVLGSAPERA
                     HTEQPEAGSDRRPQGPSEWMQEAVSTFSHHVKGNELQDIPGEQVTEEHFTDEQGNVVT
                     KKITRKVVLHVDPSGADGTQEPEEVISGGPLEDPSEMEADVDYFMTHAKDHTSTPNP"
     misc_feature    87..242
                     /gene="ANK1"
                     /note="Ankyrin repeats (many copies); Region: Ank_4;
                     pfam13637"
                     /db_xref="CDD:372654"
     misc_feature    87..173
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    177..272
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    192..464
                     /gene="ANK1"
                     /note="Ankyrin repeats (3 copies); Region: Ank_2;
                     pfam12796"
                     /db_xref="CDD:463710"
     misc_feature    279..371
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(282..284,294..299,306..314,318..323,333..335,
                     342..344,369..371,375..377,381..383,393..398,405..413,
                     417..422,432..434,441..443,468..470,474..476,480..482,
                     492..497,504..512,516..521,531..533,540..542)
                     /gene="ANK1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    375..470
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    408..1271
                     /gene="ANK1"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    474..548
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    573..656
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    663..755
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    759..854
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(858..860,864..866,876..881,888..896,900..905,
                     915..917,924..926,951..953,957..959,963..965,975..980,
                     987..995,999..1004,1014..1016,1023..1025,1050..1052,
                     1056..1058,1062..1064,1074..1079,1086..1094,1098..1103,
                     1113..1115,1122..1124)
                     /gene="ANK1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    858..953
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    900..1766
                     /gene="ANK1"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    957..1052
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1056..1148
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1155..1250
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1254..1256,1260..1262,1272..1277,1284..1292,
                     1296..1301,1311..1313,1320..1322,1347..1349,1353..1355,
                     1359..1361,1371..1376,1383..1391,1395..1400,1410..1412,
                     1419..1421,1446..1448,1452..1454,1458..1460,1470..1475,
                     1482..1490,1494..1499,1509..1511,1518..1520)
                     /gene="ANK1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1254..1349
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1353..1448
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1452..1541
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1554..1646
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(1557..1559,1569..1574,1581..1589,1593..1598,
                     1608..1610,1617..1619,1644..1646,1650..1652,1656..1658,
                     1668..1673,1680..1688,1692..1697,1707..1709,1716..1718,
                     1743..1745,1749..1751,1755..1757,1767..1772,1779..1787,
                     1791..1796,1806..1808,1815..1817)
                     /gene="ANK1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1602..2408
                     /gene="ANK1"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    1650..1745
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1749..1835
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1848..1940
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1947..2042
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(2046..2048,2052..2054,2064..2069,2076..2084,
                     2088..2093,2103..2105,2112..2114,2139..2141,2145..2147,
                     2151..2153,2163..2168,2175..2183,2187..2192,2202..2204,
                     2211..2213,2238..2240,2244..2246,2250..2252,2262..2267,
                     2274..2282,2286..2291,2301..2303,2310..2312)
                     /gene="ANK1"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    2046..2141
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2145..2240
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2244..2330
                     /gene="ANK1"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    2778..3092
                     /gene="ANK1"
                     /note="Domain present in ZO-1 and Unc5-like netrin
                     receptors; Region: ZU5; smart00218"
                     /db_xref="CDD:128514"
     misc_feature    3753..4145
                     /gene="ANK1"
                     /note="UPA domain; Region: UPA_2; pfam17809"
                     /db_xref="CDD:375346"
     misc_feature    4251..4502
                     /gene="ANK1"
                     /note="Death domain of Ankyrin-1; Region: Death_ank1;
                     cd08805"
                     /db_xref="CDD:260067"
ORIGIN      
        1 gccgcgggct cggatttccg cgccggcgcc ggacgatggc agcgcgaccg cgcaggtcgg
       61 gtccagacgc cgcggccgat gctgctacca gctttctgag ggcagcaaga tcaggtaact
      121 tggacaaagc tttggaccac ctgcggaatg gggtagacat taacacctgt aatcagaatg
      181 ggctgaacgg cttacatctg gcctctaaag aaggccacgt gaagatggtg gtcgaacttc
      241 tgcacaaaga gatcatcctg gaaacgacaa ccaagaaggg gaacacggcg ctgcacatcg
      301 ccgccctggc gggtcaggac caggtggtgc gggagctcgt caactatggc gccaacgtca
      361 acgcccagtc acagaaaggc tttacacccc tgtacatggc agcacaagag aatcacttgg
      421 aggtggttaa gtttttgctg gaaaacggag ctaatcagaa tgtagccaca gaagacggct
      481 tcacccctct ggccgtggcc ctgcagcagg gccacgagaa cgtggtggcc cacctcatca
      541 actacgggac gagggggaag gtgcgcctgc cggccctgca catcgcggcc cgcaacgatg
      601 acacgcggac ggccgcagtg ctgctgcaga acgaccccaa ccccgacgtg ctctccaaga
      661 cgggattcac ccccctccac atcgcagctc attacgagaa cctcaacgtg gcccagctgc
      721 tcctcaaccg gggagccagt gtcaacttca cgccccagaa cggcatcacg cctctgcaca
      781 ttgcttcccg cagggggaac gtgatcatgg tgcggcttct gctggaccgc ggggcccaga
      841 tagaaacaag gaccaaggat gaattgacac ccctccactg tgcagctcgg aatgggcacc
      901 tgcgaatctc agagatcctg ctggaccacg gggcgcccat ccaagccaaa accaagaatg
      961 gcttgtcccc aatccacatg gcggctcagg gagaccacct tgactgtgtc cgactcctat
     1021 tgcaatacaa tgcagagata gacgacatca cactggacca cctgaccccg ctccacgtgg
     1081 ctgcccactg cggccaccac agggtggcca aggtcctttt ggataaaggg gccaaaccaa
     1141 actccagagc cctgaatggc tttaccccct tacacatcgc ctgcaagaag aaccatatcc
     1201 gcgtcatgga gctgctgctg aagacggggg cctccatcga tgctgtcact gagtctggcc
     1261 tgacacctct ccacgtggcc tccttcatgg ggcacctgcc catcgtgaag agcctgctgc
     1321 agcgggaagc atcgcccaac gtctccaatg tgaaagtgga gaccccgcta cacatggcag
     1381 ccagagcagg acacacggaa gtggccaaat atttgctcca gaacaaagcc aaagtcaatg
     1441 ccaaggccaa ggatgaccag accccacttc actgtgcagc tcgcattggc cacacaaaca
     1501 tggtgaagct cctgctagaa aatgacgcca accccaacct ggccaccact gccgggcaca
     1561 cccccctgca catcgcagcc cgagagggcc acgtggaaac ggccctggcc cttctggaaa
     1621 aggaggcgtc ccaggcgtgc atgaccaaga aaggatttac ccctctccac gtggctgcta
     1681 agtacgggaa ggtgcgcgtg gcacagctgc tgctggagca tgacgcacac ccagacgccg
     1741 ccgggaagaa tggcctgacg cccctgcatg tggccgtgca ccacaaccac ctggacattg
     1801 tcaagctgct gctgccccgg ggcagctccc cacacagcct ggcctggaac ggctacaccc
     1861 ctctgcacat cgctgccaag cagaaccaga tggaggtggc ccacaacctg ctgcagtacg
     1921 ggggctcggc gaacgcagag tccatgcaag gcgtgacacc cctccacctg gcggcccagg
     1981 agggtcacgc ggacatggtg gctctcctgc tctccaaaca ggccaacggc aacctgggca
     2041 acaagagtgg actcactccc cttcatctgg tcgcacaaga aggtcacgtt caagtggcag
     2101 acgtgctgat caaacatggt gtcacggtgg atgccaccac ccggatgggt tacactccac
     2161 tccacgtggc gagccattat gggaatatca ggctggtgaa gttcctgcta cagcaccagg
     2221 cggacgtcaa tgccaagact aagctcggat acagtcccct gcaccaggca gctcaacaag
     2281 gccatacaga catcgtgaca ctgcttctca agaatggtgc ttccccaaac gaggtcagct
     2341 cgaatggaac cacacctctg gccatagcca agcgcttggg ctacatttct gtaacagacg
     2401 tgctcaaggt tgtcaccgat gaaaccagtg tcgcgttggt cagcgacaag caccggatga
     2461 gcttccccga gacggtggat gagatcctgg acgtctctga agatgaaggg gaagaacttg
     2521 ttggcttcaa ggctgagaag caggattcca gggatataga tgaagagaaa gagctgctgg
     2581 attttgtgcc gaagctggac caagtggtgg aatccccagc catccctcgg attccttgcg
     2641 tcacacccga gacagtggtg atcagatctg aagagccaga gcaggcatct aaggagtatg
     2701 atgaagactc actgatcccc agcagcccgg ccacagagac ctcagacaac atcagcccgg
     2761 tggccagccc tgtgcacaca gggttcctgg tgagcttcat ggtggacgcc cgcgggggct
     2821 ccatgcgggg cagcaggcac aacggcctga gggtggtggt cccgccccgg acgtgcgcag
     2881 cacccactcg catcacctgc cgcctggtga agccccagaa gctgcccacg ccgcccccgc
     2941 tggccgagga ggagggcctg gccagcaggg tcatcgccct gggccccaca ggagttcaat
     3001 tcctgagccc tgtcatcgtg gaggtccccc acttcgcctc ccaaggccgt ggggaccgcg
     3061 agcttgtggt gctgcggagt gaaaacggct ccgtgtggaa ggaacacaag aaccgctacg
     3121 gagaaagcta cctggatcag atcctcaacg ggatggacga agagctgggg agcctggagg
     3181 agctggagaa gaagagggtc tgccgcatcg ttaccaccga cttccccttg tacttcgtga
     3241 ttatgtcaag gctctaccag gactacgaca ccatcggccc cgaggggggc tccctgaaaa
     3301 gcacactcgt ccccctggtg caggccacct tcccagaaaa tgctgtcacc aagaaagtga
     3361 agctggccct gcaggcccag cctgtacccg atgagctggt caccaaactc ctgggcaacc
     3421 aggccacctt cagccccatt gtcaccgtgg agccgaggcg ccgcaagttc caccgcccca
     3481 tcgggcttcg cgtcccactc cctccctcct ggacagataa ccctcgggac agcggggagg
     3541 gagacaccac cagcctgcgg ctgctctgca gcgtcattgg agggacagac caggcccagt
     3601 gggaagacat cacggggacc accaagctta tgtacgccaa tgagtgcgcc accttcacca
     3661 ccaacgtctc tgccaggttc tggctgtcgg actgccctcg gacggctgaa gctgtgaact
     3721 tcgccaccct gctgtacaag gagctcaccg cggtgcccta catggccaag tttgtcattt
     3781 tcgccaagat gaacgacccc cgagaagggc gactgcgctg ctactgcatg acgacggatg
     3841 acagggtgga caagacgctg gagcagcacg agaacttcgt ggaggtggcc cggagcaggg
     3901 acatagaggt tttggaagga atgcccctct tcgcagagct ctccgggaat ctggtgccca
     3961 tcaagaaggc cgcccagcag cggagtttcc tcttccagtc tttccgggag agccggttgg
     4021 ccattcctgt caaggtgagg gacagcagtc gagatccagc agggtccttg tcattcctgc
     4081 gcaaggcgat gaagtacgag gacacgcagc acatcctctg ccacctaaac gtcaccatgc
     4141 caccctgcac caagggcagt ggagccgatg accggaggag gaccctgacg ccgctggccc
     4201 tgagatacag catcctcagc gagtccacat tgggtttcct cagcggcgca gaccgggctg
     4261 acatgaagat ggctattata tcagagcacc tgggcctcag ctgggccgag ctggcccgcg
     4321 agctgcagtt cagcgtggat gacatcaaca ggatccgcgt ggagaacccc aactccttgc
     4381 tggagcagag cgtggccttg ttgaacctct gggtcatccg tgaaggccaa gatgcaaaga
     4441 tggagaacct gtacgcggcc ctgcggcaca tcgaccgcgg cgagatcgtg aacatgctgg
     4501 agggctcggg caggcagggc cgcaacctga agcccgaccg ccggcccacg gaccgggact
     4561 actcgtcgta cccctcccag atgaatggtt actcctcgct gcaggacgag ctgctgtccc
     4621 ccgcctccct gcactacgcg ctcccctctc cgctgcgcgc agaccagtac tggaacgagg
     4681 tggccgtcct agacgccatc cccttggcgg gcacggagca tgacgccatg ctggagatgt
     4741 ctgacatgca ggtgtggtcc gcgggcctca cgccctcgtt ggtcactgct gaggactcct
     4801 ctctggagtg cagcaaggcc gaggactcgg acgccactgg ccacgagtgg aaactggagg
     4861 gggcgctctc cgagggaccc cagggcccca tgctgggctc tctggacctc gtggaggacg
     4921 acacagtgga ttcagatgcc gcaaatggcc ttatcgattt gcttgaccag gaggaaggcc
     4981 agcagagggt acaagcccac atcacagaat cccacaccgt gagtcgggtg atggactcca
     5041 gccaggacag actgcaggac tgggatgcgg aaggctccat cgtctcctat ctgcaagagg
     5101 ccacacaagg ctcctggggg gaggaggccc tgcaaggccc acacttgttc cagagaaccg
     5161 tcagcaggtc ttgggagcac gaagaggtcc tgggctctgc accggagcgc gcacacacgg
     5221 agcagcccga ggccggcagc gaccggagac cacagggccc cagcgagtgg atgcaggagg
     5281 ctgtcagcac cttctcccac cacgtaaagg ggaatgagct tcaggatatt ccaggggagc
     5341 aggtgacaga ggagcatttc acggatgagc agggcaacgt cgtcaccaag aagatcactc
     5401 gcaaagtcgt tctccacgtc gatccatccg gagccgatgg cacccaggag cccgaggagg
     5461 tgatttctgg ggggcccctg gaggacccta gtgagatgga ggccgatgtt gattacttta
     5521 tgactcacgc caaggatcac acctcgacac ccaacccttg aactccacac actctgccac
     5581 gcacccgaga gctggaccga ggccccggaa gccgcgcaca cgtccctgga ggcttacggc
     5641 atgacctctg taagggacgt cctttagtca cctgttcgca tgaacgaccg actgtagacg
     5701 catgacctac agtcctctat cctgcctctg gcgacggtgg atctctttct ggagtctgaa
     5761 cggaagcagc aagagggggg agagagagag ggggacgtaa aacaagcgca ggagagcacg
     5821 gaacgcaaca gcaaacaagg gctcttttgt ggctgggatg agattttttt ttaaatcatt
     5881 tcaatttcga cttgttacag ggtacttttt tttcaacctc atctgtaaga aatccatgtg
     5941 agcttcctgg aaaggaaaaa aaaaaaagaa aactagacat gaaatcagtt ccacacctta
     6001 atcccttacc ctcatccacc agccttcccc acacctccac gctccacgtg tgaccagccc
     6061 tgccgctgcc ccgtggaccg aaccttccag aacgctctac atggcgtcag gacacacaca
     6121 cgcatacaca cacacacaca cagacacaca cacccctctc ccctctgctc agtatacaca
     6181 cagattttac tgtgacatcc gaagttgtat agactctcct gtggataaac tggaaatttt
     6241 ttatgttgtc gctctctctc tctctctgcc agtttcagta ttaatcatct tccaatggaa
     6301 aatcattacc ttcagagtgc attcggggtt cctcgtgtta gggacttaag actctgaggc
     6361 gaggaccccc aggcttagct gtagggctcc aagggagcca gtgcccatcc gaaagggtct
     6421 tcactctcag ctgggggaag gccggtggct gtcccaggat tgcaccagca tgttcaatag
     6481 agaagaggtt ttctatatct tcaagcactt atgtcatagt ccgtgttcaa agtgtcagct
     6541 gtacagtaat cagcctgtgt atatgaaaaa caataaatac tatgcaaacc aatagaaaca
     6601 ctttagcagt atgtacaaag cactcacagc tcagctcctg aggacttctc cgggctgcgg
     6661 gaggagcaca gcctgtctct cagtgaaaga ggaaggaagg gagtaggcct agggaatgca
     6721 cctgcctgtt ctcaggtcag ccgccgcccc gaggtctccc agagcgaact tggtgctgta
     6781 cgtccaggca gccgcgggat gcggggcccg ggctgggcag cctcagtgcc cccatctgac
     6841 caacacccca ccctgaaccc cctggagagg caccgcaggg ggagaaacgg ctggaaggag
     6901 accttcctgg gccagggccc cgtcagggcc ggacggagac ggcggctggc tgttcctcgc
     6961 ctcggtgcca tcggggaaga gccttaagtt acaccagagc ccccggcagg gggaggcccg
     7021 aatcagcaca acgcgcctgc cccgcgcggc accctccggg ccaggggaga gactgcaggc
     7081 tcttctcgcc cgcctgaggg ccactgtgtg tggatgtccc gtcacctttc tccctgcttc
     7141 tctgccgaga tgtcctcaga acacatccga accttacaag tagcacagaa gctccctcga
     7201 cgtcagagcc cccaaccccc gaggccccgg ctggccccgg cgcacaagtg ttctggtggg
     7261 tccgggcggg gctggccggg ctccccgagg gacgggcggg gagtgggagc ttgagcgcgc
     7321 gcgtcggccc gcgagctcca gacccaaccc ccgcgggggc cgcgcgcaga gcatccccgc
     7381 cggccggtcc ctccgccccg ccgcggccgg ccggactcag tgaaggccga ggaagacagg
     7441 cgcagggccg cctcccgccg cgatctgccg ccgccgaccc agtagctcct gtagagccgc
     7501 ggccccggcc ccggttgcgc tttggctcgt cgctctgtct tgcttggccc gccggcccgc
     7561 gggcctcggc ggcatgctgc gttcgctgct agtaggagct gtaggggaga ggtttggggt
     7621 cgccacacaa tgcctagaga atgctgcagt ctgcacctta gacgctgttt agacgttttg
     7681 gaatcacctt gattttttaa attgttatga aaatgattct tttcttgact cccactcgct
     7741 ctgttcttgg gagggacttc ccaccgcaca ccccactcca ctctgatgt
//
LOCUS       XM_032618510            1752 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin 1 (ANK1), transcript variant X2,
            mRNA.
ACCESSION   XM_032618510
VERSION     XM_032618510.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1752
                     /gene="ANK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 Proteins, and 75%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746797"
     CDS             188..658
                     /gene="ANK1"
                     /codon_start=1
                     /product="ankyrin-1 isoform X2"
                     /protein_id="XP_032474401.1"
                     /db_xref="GeneID:116746797"
                     /translation="MWTFITQLLVTLVLLGFFLVSCQNVMHIVRGSLCFVLKHVHQEL
                     DKELGESEGLSDDEETISTRVVRRRVLLKGNELQDIPGEQVTEEHFTDEQGNVVTKKI
                     TRKVVLHVDPSGADGTQEPEEVELRGYSSLQPDLIEGRKGAQIVKRASLKRGKQ"
ORIGIN      
        1 ggctctcggc aggagggcac tctggcggca gttccactag gggccctgca gcctccctcg
       61 cggggagaaa atggagggtg tcccaggggg cctccagagt cccagaggag aatgagaggc
      121 tggccccccg cctggtggcc ccctggctgc gcaggccctg gagggccaga ctcgtgagga
      181 ggtgacgatg tggaccttca tcacccagct gctggtcacc ctggtgctgc tgggcttctt
      241 tctggtcagc tgccagaacg tgatgcacat cgtccggggc tccctgtgct ttgtcctgaa
      301 gcacgtccac caggagctgg acaaggagct gggggagagc gagggcctga gcgacgacga
      361 ggagaccatc tccaccaggg tggtccggcg ccgggtcctc ctgaagggga atgagcttca
      421 ggatattcca ggggagcagg tgacagagga gcatttcacg gatgagcagg gcaacgtcgt
      481 caccaagaag atcactcgca aagtcgttct ccacgtcgat ccatccggag ccgatggcac
      541 ccaggagccc gaggaggtgg agctgagagg gtacagtagc ctgcagccgg acctgataga
      601 gggcaggaag ggggctcaga tagtgaagcg ggccagcctc aaaaggggga aacagtgatc
      661 tcgagcccct cccagtggaa tggcctcttt ggaggatcac acctcgacac ccaacccttg
      721 aactccacac actctgccac gcacccgaga gctggaccga ggccccggaa gccgcgcaca
      781 cgtccctgga ggcttacggc atgacctctg taagggacgt cctttagtca cctgttcgca
      841 tgaacgaccg actgtagacg catgacctac agtcctctat cctgcctctg gcgacggtgg
      901 atctctttct ggagtctgaa cggaagcagc aagagggggg agagagagag ggggacgtaa
      961 aacaagcgca ggagagcacg gaacgcaaca gcaaacaagg gctcttttgt ggctgggatg
     1021 agattttttt ttaaatcatt tcaatttcga cttgttacag ggtacttttt tttcaacctc
     1081 atctgtaaga aatccatgtg agcttcctgg aaaggaaaaa aaaaaaagaa aactagacat
     1141 gaaatcagtt ccacacctta atcccttacc ctcatccacc agccttcccc acacctccac
     1201 gctccacgtg tgaccagccc tgccgctgcc ccgtggaccg aaccttccag aacgctctac
     1261 atggcgtcag gacacacaca cgcatacaca cacacacaca cagacacaca cacccctctc
     1321 ccctctgctc agtatacaca cagattttac tgtgacatcc gaagttgtat agactctcct
     1381 gtggataaac tggaaatttt ttatgttgtc gctctctctc tctctctgcc agtttcagta
     1441 ttaatcatct tccaatggaa aatcattacc ttcagagtgc attcggggtt cctcgtgtta
     1501 gggacttaag actctgaggc gaggaccccc aggcttagct gtagggctcc aagggagcca
     1561 gtgcccatcc gaaagggtct tcactctcag ctgggggaag gccggtggct gtcccaggat
     1621 tgcaccagca tgttcaatag agaagaggtt ttctatatct tcaagcactt atgtcatagt
     1681 ccgtgttcaa agtgtcagct gtacagtaat cagcctgtgt atatgaaaaa caataaatac
     1741 tatgcaaacc aa
//
LOCUS       XM_032618511            2699 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin 1 (ANK1), transcript variant X3,
            mRNA.
ACCESSION   XM_032618511
VERSION     XM_032618511.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2699
                     /gene="ANK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 91% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746797"
     CDS             1..471
                     /gene="ANK1"
                     /codon_start=1
                     /product="ankyrin-1 isoform X3"
                     /protein_id="XP_032474402.1"
                     /db_xref="GeneID:116746797"
                     /translation="MWTFITQLLVTLVLLGFFLVSCQNVMHIVRGSLCFVLKHVHQEL
                     DKELGESEGLSDDEETISTRVVRRRVLLKGNELQDIPGEQVTEEHFTDEQGNVVTKKI
                     TRKVVLHVDPSGADGTQEPEEVISGGPLEDPSEMEADVDYFMTHAKDHTSTPNP"
ORIGIN      
        1 atgtggacct tcatcaccca gctgctggtc accctggtgc tgctgggctt ctttctggtc
       61 agctgccaga acgtgatgca catcgtccgg ggctccctgt gctttgtcct gaagcacgtc
      121 caccaggagc tggacaagga gctgggggag agcgagggcc tgagcgacga cgaggagacc
      181 atctccacca gggtggtccg gcgccgggtc ctcctgaagg ggaatgagct tcaggatatt
      241 ccaggggagc aggtgacaga ggagcatttc acggatgagc agggcaacgt cgtcaccaag
      301 aagatcactc gcaaagtcgt tctccacgtc gatccatccg gagccgatgg cacccaggag
      361 cccgaggagg tgatttctgg ggggcccctg gaggacccta gtgagatgga ggccgatgtt
      421 gattacttta tgactcacgc caaggatcac acctcgacac ccaacccttg aactccacac
      481 actctgccac gcacccgaga gctggaccga ggccccggaa gccgcgcaca cgtccctgga
      541 ggcttacggc atgacctctg taagggacgt cctttagtca cctgttcgca tgaacgaccg
      601 actgtagacg catgacctac agtcctctat cctgcctctg gcgacggtgg atctctttct
      661 ggagtctgaa cggaagcagc aagagggggg agagagagag ggggacgtaa aacaagcgca
      721 ggagagcacg gaacgcaaca gcaaacaagg gctcttttgt ggctgggatg agattttttt
      781 ttaaatcatt tcaatttcga cttgttacag ggtacttttt tttcaacctc atctgtaaga
      841 aatccatgtg agcttcctgg aaaggaaaaa aaaaaaagaa aactagacat gaaatcagtt
      901 ccacacctta atcccttacc ctcatccacc agccttcccc acacctccac gctccacgtg
      961 tgaccagccc tgccgctgcc ccgtggaccg aaccttccag aacgctctac atggcgtcag
     1021 gacacacaca cgcatacaca cacacacaca cagacacaca cacccctctc ccctctgctc
     1081 agtatacaca cagattttac tgtgacatcc gaagttgtat agactctcct gtggataaac
     1141 tggaaatttt ttatgttgtc gctctctctc tctctctgcc agtttcagta ttaatcatct
     1201 tccaatggaa aatcattacc ttcagagtgc attcggggtt cctcgtgtta gggacttaag
     1261 actctgaggc gaggaccccc aggcttagct gtagggctcc aagggagcca gtgcccatcc
     1321 gaaagggtct tcactctcag ctgggggaag gccggtggct gtcccaggat tgcaccagca
     1381 tgttcaatag agaagaggtt ttctatatct tcaagcactt atgtcatagt ccgtgttcaa
     1441 agtgtcagct gtacagtaat cagcctgtgt atatgaaaaa caataaatac tatgcaaacc
     1501 aatagaaaca ctttagcagt atgtacaaag cactcacagc tcagctcctg aggacttctc
     1561 cgggctgcgg gaggagcaca gcctgtctct cagtgaaaga ggaaggaagg gagtaggcct
     1621 agggaatgca cctgcctgtt ctcaggtcag ccgccgcccc gaggtctccc agagcgaact
     1681 tggtgctgta cgtccaggca gccgcgggat gcggggcccg ggctgggcag cctcagtgcc
     1741 cccatctgac caacacccca ccctgaaccc cctggagagg caccgcaggg ggagaaacgg
     1801 ctggaaggag accttcctgg gccagggccc cgtcagggcc ggacggagac ggcggctggc
     1861 tgttcctcgc ctcggtgcca tcggggaaga gccttaagtt acaccagagc ccccggcagg
     1921 gggaggcccg aatcagcaca acgcgcctgc cccgcgcggc accctccggg ccaggggaga
     1981 gactgcaggc tcttctcgcc cgcctgaggg ccactgtgtg tggatgtccc gtcacctttc
     2041 tccctgcttc tctgccgaga tgtcctcaga acacatccga accttacaag tagcacagaa
     2101 gctccctcga cgtcagagcc cccaaccccc gaggccccgg ctggccccgg cgcacaagtg
     2161 ttctggtggg tccgggcggg gctggccggg ctccccgagg gacgggcggg gagtgggagc
     2221 ttgagcgcgc gcgtcggccc gcgagctcca gacccaaccc ccgcgggggc cgcgcgcaga
     2281 gcatccccgc cggccggtcc ctccgccccg ccgcggccgg ccggactcag tgaaggccga
     2341 ggaagacagg cgcagggccg cctcccgccg cgatctgccg ccgccgaccc agtagctcct
     2401 gtagagccgc ggccccggcc ccggttgcgc tttggctcgt cgctctgtct tgcttggccc
     2461 gccggcccgc gggcctcggc ggcatgctgc gttcgctgct agtaggagct gtaggggaga
     2521 ggtttggggt cgccacacaa tgcctagaga atgctgcagt ctgcacctta gacgctgttt
     2581 agacgttttg gaatcacctt gattttttaa attgttatga aaatgattct tttcttgact
     2641 cccactcgct ctgttcttgg gagggacttc ccaccgcaca ccccactcca ctctgatgt
//
LOCUS       XM_032618514            2558 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin 1 (ANK1), transcript variant X4,
            mRNA.
ACCESSION   XM_032618514
VERSION     XM_032618514.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2558
                     /gene="ANK1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 87% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746797"
     CDS             1..330
                     /gene="ANK1"
                     /codon_start=1
                     /product="ankyrin-1 isoform X4"
                     /protein_id="XP_032474405.1"
                     /db_xref="GeneID:116746797"
                     /translation="MWTFITQLLVTLVLLGFFLVSCQNVMHIVRGSLCFVLKHVHQEL
                     DKELGESEGLSDDEETISTRVVRRRVLLKGNELQDIPGEQVTEEHFTDEQGNVVTKKD
                     HTSTPNP"
ORIGIN      
        1 atgtggacct tcatcaccca gctgctggtc accctggtgc tgctgggctt ctttctggtc
       61 agctgccaga acgtgatgca catcgtccgg ggctccctgt gctttgtcct gaagcacgtc
      121 caccaggagc tggacaagga gctgggggag agcgagggcc tgagcgacga cgaggagacc
      181 atctccacca gggtggtccg gcgccgggtc ctcctgaagg ggaatgagct tcaggatatt
      241 ccaggggagc aggtgacaga ggagcatttc acggatgagc agggcaacgt cgtcaccaag
      301 aaggatcaca cctcgacacc caacccttga actccacaca ctctgccacg cacccgagag
      361 ctggaccgag gccccggaag ccgcgcacac gtccctggag gcttacggca tgacctctgt
      421 aagggacgtc ctttagtcac ctgttcgcat gaacgaccga ctgtagacgc atgacctaca
      481 gtcctctatc ctgcctctgg cgacggtgga tctctttctg gagtctgaac ggaagcagca
      541 agagggggga gagagagagg gggacgtaaa acaagcgcag gagagcacgg aacgcaacag
      601 caaacaaggg ctcttttgtg gctgggatga gatttttttt taaatcattt caatttcgac
      661 ttgttacagg gtactttttt ttcaacctca tctgtaagaa atccatgtga gcttcctgga
      721 aaggaaaaaa aaaaaagaaa actagacatg aaatcagttc cacaccttaa tcccttaccc
      781 tcatccacca gccttcccca cacctccacg ctccacgtgt gaccagccct gccgctgccc
      841 cgtggaccga accttccaga acgctctaca tggcgtcagg acacacacac gcatacacac
      901 acacacacac agacacacac acccctctcc cctctgctca gtatacacac agattttact
      961 gtgacatccg aagttgtata gactctcctg tggataaact ggaaattttt tatgttgtcg
     1021 ctctctctct ctctctgcca gtttcagtat taatcatctt ccaatggaaa atcattacct
     1081 tcagagtgca ttcggggttc ctcgtgttag ggacttaaga ctctgaggcg aggaccccca
     1141 ggcttagctg tagggctcca agggagccag tgcccatccg aaagggtctt cactctcagc
     1201 tgggggaagg ccggtggctg tcccaggatt gcaccagcat gttcaataga gaagaggttt
     1261 tctatatctt caagcactta tgtcatagtc cgtgttcaaa gtgtcagctg tacagtaatc
     1321 agcctgtgta tatgaaaaac aataaatact atgcaaacca atagaaacac tttagcagta
     1381 tgtacaaagc actcacagct cagctcctga ggacttctcc gggctgcggg aggagcacag
     1441 cctgtctctc agtgaaagag gaaggaaggg agtaggccta gggaatgcac ctgcctgttc
     1501 tcaggtcagc cgccgccccg aggtctccca gagcgaactt ggtgctgtac gtccaggcag
     1561 ccgcgggatg cggggcccgg gctgggcagc ctcagtgccc ccatctgacc aacaccccac
     1621 cctgaacccc ctggagaggc accgcagggg gagaaacggc tggaaggaga ccttcctggg
     1681 ccagggcccc gtcagggccg gacggagacg gcggctggct gttcctcgcc tcggtgccat
     1741 cggggaagag ccttaagtta caccagagcc cccggcaggg ggaggcccga atcagcacaa
     1801 cgcgcctgcc ccgcgcggca ccctccgggc caggggagag actgcaggct cttctcgccc
     1861 gcctgagggc cactgtgtgt ggatgtcccg tcacctttct ccctgcttct ctgccgagat
     1921 gtcctcagaa cacatccgaa ccttacaagt agcacagaag ctccctcgac gtcagagccc
     1981 ccaacccccg aggccccggc tggccccggc gcacaagtgt tctggtgggt ccgggcgggg
     2041 ctggccgggc tccccgaggg acgggcgggg agtgggagct tgagcgcgcg cgtcggcccg
     2101 cgagctccag acccaacccc cgcgggggcc gcgcgcagag catccccgcc ggccggtccc
     2161 tccgccccgc cgcggccggc cggactcagt gaaggccgag gaagacaggc gcagggccgc
     2221 ctcccgccgc gatctgccgc cgccgaccca gtagctcctg tagagccgcg gccccggccc
     2281 cggttgcgct ttggctcgtc gctctgtctt gcttggcccg ccggcccgcg ggcctcggcg
     2341 gcatgctgcg ttcgctgcta gtaggagctg taggggagag gtttggggtc gccacacaat
     2401 gcctagagaa tgctgcagtc tgcaccttag acgctgttta gacgttttgg aatcaccttg
     2461 attttttaaa ttgttatgaa aatgattctt ttcttgactc ccactcgctc tgttcttggg
     2521 agggacttcc caccgcacac cccactccac tctgatgt
//
LOCUS       XM_032618515            1551 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UFM1 specific peptidase 2 (UFSP2),
            transcript variant X1, mRNA.
ACCESSION   XM_032618515
VERSION     XM_032618515.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1551
                     /gene="UFSP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746798"
     CDS             62..1471
                     /gene="UFSP2"
                     /codon_start=1
                     /product="ufm1-specific protease 2 isoform X1"
                     /protein_id="XP_032474406.1"
                     /db_xref="GeneID:116746798"
                     /translation="MVISETMDILFRMRGGLDLAFQLATPNEIFVKKALKHMLSDLST
                     KLSSNALVFRICHSSVYIWPNSDMNTIPGELTDSSTCKNIMRFIQFEQEEDTKRKFMR
                     KKDRKLSDMHQIVNIDLMLEMSTPLAAVTPIIERESGGHHYVNMTLPVDAVVPVAPEE
                     MWGKVRKRLVDAIHNQLTDMEKCILKYMKGTSIVVPEPLHFLLPGEKNLVTISYPSGI
                     PDDQLQAYRKELHDLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNIETG
                     MISVVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFRHQGYTERSIPTHREIQQAL
                     VDAGDKPATFVGSRQWIGSIEVQLVLNHLIGITSKILFVSQGSEIASQGRELVNHFQS
                     EGTPVMIGGGVLAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVILEKGWCGWKGPD
                     FWNSNAYYNLCLPQRPNTI"
     misc_feature    887..1444
                     /gene="UFSP2"
                     /note="Peptidase family C78; Region: Peptidase_C78;
                     pfam07910"
                     /db_xref="CDD:400318"
ORIGIN      
        1 ccgggccagt gtcctgtgct tggtcggccg acggcgcttg tatcagctcc acgtacccgc
       61 tatggttatt tcagagacta tggatatact cttcagaatg agaggcggcc ttgatctagc
      121 ttttcagcta gctactccta atgaaatttt tgtcaagaaa gcactaaaac atatgttgag
      181 tgacctgtca accaagcttt cttcaaatgc acttgtgttc cgaatctgcc acagttcagt
      241 gtacatatgg cctaacagtg acatgaacac cattccagga gaactgactg atagttccac
      301 ctgtaagaac ataatgcgct ttattcaatt tgaacaggaa gaagatacaa aacgaaaatt
      361 catgaggaag aaagacagaa agttgtcaga catgcatcag atagtaaata tagatcttat
      421 gctggaaatg tcaacccctc tggcagctgt aacacccatc attgaaagag aaagcggagg
      481 acaccactat gttaatatga ctttaccagt cgatgcagtt gtacctgttg ctccagaaga
      541 aatgtgggga aaagttcgta aacgtctagt tgatgcaatt cataatcaac taactgatat
      601 ggaaaaatgc attttgaaat acatgaaagg aacatctatc gtggtccctg aaccactgca
      661 ctttttatta ccaggggaaa aaaatcttgt aacaatttca tatccgtcag gaattccaga
      721 tgatcagctg caggcctaca gaaaggagtt acacgatctc ttcaatctgc ctcatgacag
      781 accttatttc aaaaggtcta atgcttacca ctttccagat gaaccataca aagatggtta
      841 cattagaaat ccacatactt atctcaatcc acctaacata gagactggta tgatttctgt
      901 ggtccagggc atatatggtt accatcatta tatgcaggat cggatcgatg acaatggctg
      961 gggctgtgct tatcggtctc tgcagactat ctgctcttgg ttcagacacc agggatacac
     1021 agagagatcc attccaacac acagagaaat tcagcaggct ctagttgatg ctggggacaa
     1081 accagcaaca tttgtcggat cacggcagtg gattggatct atcgaggtgc agctggtact
     1141 gaaccatttg attggtataa cttcaaaaat actttttgtc agccaaggtt ctgaaatagc
     1201 ctctcaggga cgggaactgg ttaatcattt ccagagtgaa ggaacgccag taatgatcgg
     1261 gggaggagtt ttggcccaca caatactagg agttgcatgg aatgagatta caggacagat
     1321 aaaatttctg attttagatc cgcattatac aggcgctgaa gatctacaag ttattttaga
     1381 aaagggctgg tgtggatgga agggtccaga cttttggaac agcaatgctt actataactt
     1441 atgtcttcct cagcgaccaa atactattta aaatatcttg gactcaaaga ctgtagtaaa
     1501 gttgtacttt ataaatttgt tgataaagaa taaatttaat ttcaaattga a
//
LOCUS       XM_032618516            1441 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus UFM1 specific peptidase 2 (UFSP2),
            transcript variant X2, mRNA.
ACCESSION   XM_032618516
VERSION     XM_032618516.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1441
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1441
                     /gene="UFSP2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746798"
     CDS             63..1361
                     /gene="UFSP2"
                     /codon_start=1
                     /product="ufm1-specific protease 2 isoform X2"
                     /protein_id="XP_032474407.1"
                     /db_xref="GeneID:116746798"
                     /translation="MLSDLSTKLSSNALVFRICHSSVYIWPNSDMNTIPGELTDSSTC
                     KNIMRFIQFEQEEDTKRKFMRKKDRKLSDMHQIVNIDLMLEMSTPLAAVTPIIERESG
                     GHHYVNMTLPVDAVVPVAPEEMWGKVRKRLVDAIHNQLTDMEKCILKYMKGTSIVVPE
                     PLHFLLPGEKNLVTISYPSGIPDDQLQAYRKELHDLFNLPHDRPYFKRSNAYHFPDEP
                     YKDGYIRNPHTYLNPPNIETGMISVVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSW
                     FRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQLVLNHLIGITSKIL
                     FVSQGSEIASQGRELVNHFQSEGTPVMIGGGVLAHTILGVAWNEITGQIKFLILDPHY
                     TGAEDLQVILEKGWCGWKGPDFWNSNAYYNLCLPQRPNTI"
     misc_feature    777..1334
                     /gene="UFSP2"
                     /note="Peptidase family C78; Region: Peptidase_C78;
                     pfam07910"
                     /db_xref="CDD:400318"
ORIGIN      
        1 cggcgcttgt atcagctcca cgtacccgct atgaaatttt tgtcaagaaa gcactaaaac
       61 atatgttgag tgacctgtca accaagcttt cttcaaatgc acttgtgttc cgaatctgcc
      121 acagttcagt gtacatatgg cctaacagtg acatgaacac cattccagga gaactgactg
      181 atagttccac ctgtaagaac ataatgcgct ttattcaatt tgaacaggaa gaagatacaa
      241 aacgaaaatt catgaggaag aaagacagaa agttgtcaga catgcatcag atagtaaata
      301 tagatcttat gctggaaatg tcaacccctc tggcagctgt aacacccatc attgaaagag
      361 aaagcggagg acaccactat gttaatatga ctttaccagt cgatgcagtt gtacctgttg
      421 ctccagaaga aatgtgggga aaagttcgta aacgtctagt tgatgcaatt cataatcaac
      481 taactgatat ggaaaaatgc attttgaaat acatgaaagg aacatctatc gtggtccctg
      541 aaccactgca ctttttatta ccaggggaaa aaaatcttgt aacaatttca tatccgtcag
      601 gaattccaga tgatcagctg caggcctaca gaaaggagtt acacgatctc ttcaatctgc
      661 ctcatgacag accttatttc aaaaggtcta atgcttacca ctttccagat gaaccataca
      721 aagatggtta cattagaaat ccacatactt atctcaatcc acctaacata gagactggta
      781 tgatttctgt ggtccagggc atatatggtt accatcatta tatgcaggat cggatcgatg
      841 acaatggctg gggctgtgct tatcggtctc tgcagactat ctgctcttgg ttcagacacc
      901 agggatacac agagagatcc attccaacac acagagaaat tcagcaggct ctagttgatg
      961 ctggggacaa accagcaaca tttgtcggat cacggcagtg gattggatct atcgaggtgc
     1021 agctggtact gaaccatttg attggtataa cttcaaaaat actttttgtc agccaaggtt
     1081 ctgaaatagc ctctcaggga cgggaactgg ttaatcattt ccagagtgaa ggaacgccag
     1141 taatgatcgg gggaggagtt ttggcccaca caatactagg agttgcatgg aatgagatta
     1201 caggacagat aaaatttctg attttagatc cgcattatac aggcgctgaa gatctacaag
     1261 ttattttaga aaagggctgg tgtggatgga agggtccaga cttttggaac agcaatgctt
     1321 actataactt atgtcttcct cagcgaccaa atactattta aaatatcttg gactcaaaga
     1381 ctgtagtaaa gttgtacttt ataaatttgt tgataaagaa taaatttaat ttcaaattga
     1441 a
//
LOCUS       XM_032618517             659 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 37 (ANKRD37),
            transcript variant X1, mRNA.
ACCESSION   XM_032618517
VERSION     XM_032618517.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..659
                     /gene="ANKRD37"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746799"
     CDS             180..659
                     /gene="ANKRD37"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 37
                     isoform X1"
                     /protein_id="XP_032474408.1"
                     /db_xref="GeneID:116746799"
                     /translation="MLLLDCNPEVDSLRHLLETGASVNAPPDPCEQSPVHLAAGGGLA
                     CFLLWQLQTGADLNQQDVFGEAPLHKAAKVGSMECLSLLVASDAQIDLCNKNGQTAED
                     LAWSCGFPECGKFLTTIKCMQTIKPSEQSNKDHCVPVLRQKRSFGSKEDTNGKRKCW"
     misc_feature    order(195..203,207..212,222..224,231..233,261..263,
                     267..269,273..275,285..290,297..305,315..317,333..335,
                     360..362,366..368,372..374,384..389,396..404,408..413,
                     423..425,432..434,459..461)
                     /gene="ANKRD37"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    <207..>527
                     /gene="ANKRD37"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    267..362
                     /gene="ANKRD37"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    366..461
                     /gene="ANKRD37"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gttgggctgc tggggcgcag ccagagctgt ggcgcggcgg ggaggggccg gcccgttggc
       61 cctggggatc tttaaattct cctgctcttg ggcggcttgt gctcttacct gtttgtctgc
      121 agcgagcgcc tcaccgctct gctctcccaa gcactccagt cctctacttt aggtgggaga
      181 tgctgttgct cgattgcaac cccgaggtgg atagtctgag gcatctgctg gagaccgggg
      241 cctccgtcaa cgcacccccg gatccctgcg agcagtcgcc tgtccacttg gccgcaggtg
      301 gcggccttgc ttgctttctt ctctggcagc tgcagaccgg cgctgacctc aaccaacagg
      361 atgtttttgg agaagctcca ctacacaaag cagcaaaagt tggaagcatg gaatgcctca
      421 gcctgcttgt agccagtgac gcccaaattg atttatgtaa taagaatggg caaacagctg
      481 aagatcttgc ttggtcatgt ggatttccag aatgtggcaa gtttcttaca acaattaaat
      541 gtatgcagac aataaaacca agtgaacaat ccaataaaga tcattgtgtt ccagtgctca
      601 gacagaaacg aagttttgga agtaaagaag atacaaatgg gaaaaggaag tgttggtaa
//
LOCUS       XM_032618518             941 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ankyrin repeat domain 37 (ANKRD37),
            transcript variant X2, mRNA.
ACCESSION   XM_032618518
VERSION     XM_032618518.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..941
                     /gene="ANKRD37"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 2 long SRA reads, 3
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746799"
     CDS             230..706
                     /gene="ANKRD37"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 37
                     isoform X2"
                     /protein_id="XP_032474409.1"
                     /db_xref="GeneID:116746799"
                     /translation="MLLLDCNPEVDSLRHLLETGASVNAPPDPCEQSPVHLAAGGGLA
                     CFLLWQLQTGADLNQQDVFGEAPLHKAAKVGSMECLSLLVASDAQIDLCNKNGQTAED
                     LAWSCGFPECGKFLTTIKCMQTIKPSEQSNKDHCVPVLRQKRSFGSKEDTNGKRKC"
     misc_feature    order(245..253,257..262,272..274,281..283,311..313,
                     317..319,323..325,335..340,347..355,365..367,383..385,
                     410..412,416..418,422..424,434..439,446..454,458..463,
                     473..475,482..484,509..511)
                     /gene="ANKRD37"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    <257..>577
                     /gene="ANKRD37"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    317..412
                     /gene="ANKRD37"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    416..511
                     /gene="ANKRD37"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
ORIGIN      
        1 gtttgtgtac gtgcggctgc agctgggcgg agaaactccg gcagcccaag gttgggctgc
       61 tggggcgcag ccagagctgt ggcgcggcgg ggaggggccg gcccgttggc cctggggatc
      121 tttaaattct cctgctcttg ggcggcttgt gctcttacct gtttgtctgc agcgagcgcc
      181 tcaccgctct gctctcccaa gcactccagt cctctacttt aggtgggaga tgctgttgct
      241 cgattgcaac cccgaggtgg atagtctgag gcatctgctg gagaccgggg cctccgtcaa
      301 cgcacccccg gatccctgcg agcagtcgcc tgtccacttg gccgcaggtg gcggccttgc
      361 ttgctttctt ctctggcagc tgcagaccgg cgctgacctc aaccaacagg atgtttttgg
      421 agaagctcca ctacacaaag cagcaaaagt tggaagcatg gaatgcctca gcctgcttgt
      481 agccagtgac gcccaaattg atttatgtaa taagaatggg caaacagctg aagatcttgc
      541 ttggtcatgt ggatttccag aatgtggcaa gtttcttaca acaattaaat gtatgcagac
      601 aataaaacca agtgaacaat ccaataaaga tcattgtgtt ccagtgctca gacagaaacg
      661 aagttttgga agtaaagaag atacaaatgg gaaaaggaag tgttgatgtc gtattggtta
      721 tgaagaggtg tggagaaggt cttcacttca tgcagatcta ctgctcagct acaagctatg
      781 gcttttggct catcaagtgt gtctaagcac cttctaagaa ggaggaaaac tttcttctaa
      841 gtgaagataa cattcaagaa tacatgtatt tatatgcctg taacattctg gttgtgcatg
      901 ctttgtcttt taatttatta aaggagtgtc taaagaataa a
//
LOCUS       XM_032618519            2078 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus VPS37A subunit of ESCRT-I (VPS37A),
            transcript variant X1, mRNA.
ACCESSION   XM_032618519
VERSION     XM_032618519.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2078
                     /gene="VPS37A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746800"
     CDS             290..1483
                     /gene="VPS37A"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 37A
                     isoform X1"
                     /protein_id="XP_032474410.1"
                     /db_xref="GeneID:116746800"
                     /translation="MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIA
                     EIQKDVEYRLPFTVNNLTININILLPPQFPQEKPVISVYPPIRHHLVDKQGVYVTSPL
                     VNNFTMHSDLGKIIQSLLDEFWKNPPALAPASTAFPYLYSKAGGTPPCASPGFPFLPP
                     YPPQEATRTVSSLSVADTVSSSATSHTAAKPAAPSFGVLSNLPLPVPTTDTSAPISQN
                     GFGYKMPDIPDVFPELSELSVSQLTDMNDQEEVLLEQFLTLPQLKQIITDKDDLMKSI
                     EELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARL
                     KVAAHEAEEDSDNIAEDFLEGKTDIDDFLSSFMEKRTICHCRRAKEEKLQQVIAMHSQ
                     FHAPL"
     misc_feature    <449..673
                     /gene="VPS37A"
                     /note="ubiquitin E2 variant (UEV) domain of TSG101 and
                     related proteins; Region: UEV_TSG101-like; cd11685"
                     /db_xref="CDD:467408"
     misc_feature    <668..922
                     /gene="VPS37A"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    992..1429
                     /gene="VPS37A"
                     /note="Modifier of rudimentary (Mod(r)) protein; Region:
                     Mod_r; pfam07200"
                     /db_xref="CDD:462117"
ORIGIN      
        1 ctgcgcggtc aggcgtcctg actggctggt tggggcgtca gggcagtgaa gggaggactg
       61 ccggtcccgg gcggcgagtt ccctgtctcc agctgtccgc agacagagca ttcccccctg
      121 accccgagga cccccggccg ggtttgctta gagaagacgc ggctccccag cacttgggct
      181 gggacgtccc tgcccgctcc tcctctgtcg ctggggaacc gccgggctga gcagctggga
      241 gaagcaggcc agagccttct agggcctcgg gcccggggac ccgtggagga tgagctggct
      301 ctttcccctg accaagagcg cctcctcctc cgcggctggg tcccccggtg gtctcaccag
      361 cctccaacag cagaagcagc ggctgatcga gtccctccgg aactcacact ccagtatagc
      421 tgaaatacag aaagatgtgg aatacaggtt gccattcacc gtaaacaacc tgacaattaa
      481 cattaatata ttgcttcctc cacaatttcc tcaggaaaaa ccagtgatca gtgtttatcc
      541 accaatacga catcacttag tggataaaca aggagtgtat gttacctctc cattagtaaa
      601 caattttaca atgcactcag atcttgggaa aattattcag agtctgttgg atgagttttg
      661 gaagaatcct ccagctttag ctcctgcttc aacagcattc ccatacctgt acagtaaagc
      721 gggtgggacg cctccttgtg cttctccggg ttttccattt cttcctccat atcccccaca
      781 agaagctacg aggactgtca gttctttatc tgttgctgac actgtttctt cttcagcgac
      841 aagtcataca gcagccaaac ctgctgctcc ttcatttggt gtcctttcaa atctgccact
      901 gcctgttccc acaacagaca cttcagcacc gataagccaa aatggttttg gttacaagat
      961 gcctgatatc cctgatgtat ttccagaact ctcagaacta agtgtatcac aacttacaga
     1021 tatgaatgac caagaggagg tattactaga acagtttctg actttgcctc aactaaaaca
     1081 aattattact gacaaggatg acttaatgaa aagtattgag gagctagcaa gaaaaaatct
     1141 ccttttggag cccagcttgg aagccaaaag gcaaactgtt ttagataagt atgaattact
     1201 tacacaaatg aaatcaactt ttgaaaagaa gatgcaaagg cagcatgaac ttagcgagag
     1261 ctgtagtgca agtgccctac aggcaagatt gaaagtagct gcacatgaag ctgaggaaga
     1321 ctctgataat attgcagaag atttcttgga gggaaaaact gatatagatg attttctcag
     1381 tagcttcatg gaaaagagaa caatttgcca ctgtagaaga gccaaggaag aaaaacttca
     1441 acaagtgata gcaatgcaca gccaatttca tgctccacta tagattttcc tgaaaacatg
     1501 aactgccaag agaggaatgg gacacaagac taagcacatt tatatttatg atttgcaaat
     1561 tggcatttca ttacagtggc tgaattcata gatatactat atagattgta tacagaactg
     1621 agactgattt tgtacagatt agaatgattg ctatgatctt tgctttgaga aatttttctg
     1681 cactatttgc actaaaaatg tttatttgtt gttgataaat cctatcatat ttaagttcca
     1741 ctgctgttcc tctcttacta ttgattaaat acctatgcat gtaattttag ctagtttcaa
     1801 tattttataa aattacttca tttaaatttg taatttaatt tgaaactgcc tcattgcttt
     1861 atcaagaatg gtttcgattt tttcctcaac cttttttgaa aaattaccat ttcaactgta
     1921 gaaaaactgt tattcttcct gtttctttct gtatgataaa actttcagaa ataatttgtt
     1981 tttaaatatt cacagtgtca ggaaacacca aacctgccaa tgtgccgtct caaggaagta
     2041 acttttaatt catacaataa attaaaagag taaaccag
//
LOCUS       XM_032618520            1943 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus VPS37A subunit of ESCRT-I (VPS37A),
            transcript variant X2, mRNA.
ACCESSION   XM_032618520
VERSION     XM_032618520.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1943
                     /gene="VPS37A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746800"
     CDS             197..1348
                     /gene="VPS37A"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 37A
                     isoform X2"
                     /protein_id="XP_032474411.1"
                     /db_xref="GeneID:116746800"
                     /translation="MKSLFLTPTTRLSIYWLVVQRGAQAWTRIAEIQKDVEYRLPFTV
                     NNLTININILLPPQFPQEKPVISVYPPIRHHLVDKQGVYVTSPLVNNFTMHSDLGKII
                     QSLLDEFWKNPPALAPASTAFPYLYSKAGGTPPCASPGFPFLPPYPPQEATRTVSSLS
                     VADTVSSSATSHTAAKPAAPSFGVLSNLPLPVPTTDTSAPISQNGFGYKMPDIPDVFP
                     ELSELSVSQLTDMNDQEEVLLEQFLTLPQLKQIITDKDDLMKSIEELARKNLLLEPSL
                     EAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEDSDNI
                     AEDFLEGKTDIDDFLSSFMEKRTICHCRRAKEEKLQQVIAMHSQFHAPL"
     misc_feature    <314..538
                     /gene="VPS37A"
                     /note="ubiquitin E2 variant (UEV) domain of TSG101 and
                     related proteins; Region: UEV_TSG101-like; cd11685"
                     /db_xref="CDD:467408"
     misc_feature    <533..787
                     /gene="VPS37A"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    857..1294
                     /gene="VPS37A"
                     /note="Modifier of rudimentary (Mod(r)) protein; Region:
                     Mod_r; pfam07200"
                     /db_xref="CDD:462117"
ORIGIN      
        1 tcctgagcag gcccacctgt gaatgactgc agggaggaag aaattaacac atcccgttgg
       61 gaggctgact ggaaactgga aatgtttggc cttactccct ccccttttag tataaaagaa
      121 gcccgaattc tgactgaggc acaatggttc tttgggggca cgagtctacc atcttcttga
      181 tctgctggtc ttccaaatga agtcgctatt ccttacccca acaactcgtc tctcaatata
      241 ttggcttgtc gtgcagcgag gagctcaagc ttggactcgt atagctgaaa tacagaaaga
      301 tgtggaatac aggttgccat tcaccgtaaa caacctgaca attaacatta atatattgct
      361 tcctccacaa tttcctcagg aaaaaccagt gatcagtgtt tatccaccaa tacgacatca
      421 cttagtggat aaacaaggag tgtatgttac ctctccatta gtaaacaatt ttacaatgca
      481 ctcagatctt gggaaaatta ttcagagtct gttggatgag ttttggaaga atcctccagc
      541 tttagctcct gcttcaacag cattcccata cctgtacagt aaagcgggtg ggacgcctcc
      601 ttgtgcttct ccgggttttc catttcttcc tccatatccc ccacaagaag ctacgaggac
      661 tgtcagttct ttatctgttg ctgacactgt ttcttcttca gcgacaagtc atacagcagc
      721 caaacctgct gctccttcat ttggtgtcct ttcaaatctg ccactgcctg ttcccacaac
      781 agacacttca gcaccgataa gccaaaatgg ttttggttac aagatgcctg atatccctga
      841 tgtatttcca gaactctcag aactaagtgt atcacaactt acagatatga atgaccaaga
      901 ggaggtatta ctagaacagt ttctgacttt gcctcaacta aaacaaatta ttactgacaa
      961 ggatgactta atgaaaagta ttgaggagct agcaagaaaa aatctccttt tggagcccag
     1021 cttggaagcc aaaaggcaaa ctgttttaga taagtatgaa ttacttacac aaatgaaatc
     1081 aacttttgaa aagaagatgc aaaggcagca tgaacttagc gagagctgta gtgcaagtgc
     1141 cctacaggca agattgaaag tagctgcaca tgaagctgag gaagactctg ataatattgc
     1201 agaagatttc ttggagggaa aaactgatat agatgatttt ctcagtagct tcatggaaaa
     1261 gagaacaatt tgccactgta gaagagccaa ggaagaaaaa cttcaacaag tgatagcaat
     1321 gcacagccaa tttcatgctc cactatagat tttcctgaaa acatgaactg ccaagagagg
     1381 aatgggacac aagactaagc acatttatat ttatgatttg caaattggca tttcattaca
     1441 gtggctgaat tcatagatat actatataga ttgtatacag aactgagact gattttgtac
     1501 agattagaat gattgctatg atctttgctt tgagaaattt ttctgcacta tttgcactaa
     1561 aaatgtttat ttgttgttga taaatcctat catatttaag ttccactgct gttcctctct
     1621 tactattgat taaataccta tgcatgtaat tttagctagt ttcaatattt tataaaatta
     1681 cttcatttaa atttgtaatt taatttgaaa ctgcctcatt gctttatcaa gaatggtttc
     1741 gattttttcc tcaacctttt ttgaaaaatt accatttcaa ctgtagaaaa actgttattc
     1801 ttcctgtttc tttctgtatg ataaaacttt cagaaataat ttgtttttaa atattcacag
     1861 tgtcaggaaa caccaaacct gccaatgtgc cgtctcaagg aagtaacttt taattcatac
     1921 aataaattaa aagagtaaac cag
//
LOCUS       XM_032618521            5434 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger DHHC-type
            palmitoyltransferase 2 (ZDHHC2), transcript variant X1, mRNA.
ACCESSION   XM_032618521
VERSION     XM_032618521.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5434
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5434
                     /gene="ZDHHC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 long SRA reads, 15 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746801"
     CDS             259..1359
                     /gene="ZDHHC2"
                     /codon_start=1
                     /product="palmitoyltransferase ZDHHC2 isoform X1"
                     /protein_id="XP_032474412.1"
                     /db_xref="GeneID:116746801"
                     /translation="MAPSGPGSVRRRCRRVLYWIPVVFISLLLGWSYYAYAIQLCIVS
                     MENIGEQVVCLIAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKELLEREPRGEA
                     HQEVLRRAARDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVN
                     NCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQAKFHIMFLFFAAA
                     MFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKK
                     YWLLPIFSSLGDGCSFPTCLVNQDPEQPSTPAGLNSSSKNPENHQFPAKPLRESQSHL
                     LTDSQSWTENSTNLGKGKAGMSNPALTMENEN"
     misc_feature    292..1161
                     /gene="ZDHHC2"
                     /note="DHHC palmitoyltransferase; Region: DHHC; cl19890"
                     /db_xref="CDD:418707"
ORIGIN      
        1 accgtccgcc ttctccgcgc cctcctttcg cagccaccgc ctccgccgga cggaggagcc
       61 gagagtctgc ggcgccggct tggggctgcg ggatggggag ttagcgccac ggcggcggca
      121 gcggccgcgg cgcaaccggc cgccgccccc gggcccgtcc cgctggggac gccgggcgcg
      181 gccagccagc cccggagcca ggcccgcggg cagcagcgga ggcggcggcg gagctgggca
      241 ggtggatgcg gctggaagat ggcgccctcg ggcccgggca gcgtcaggcg gcggtgccgg
      301 cgggtcctgt actggatccc cgtggtgttt atcagcctcc tgctcggctg gtcctactac
      361 gcctacgcca tccagctgtg catagtgtcc atggaaaata ttggagaaca agttgtgtgc
      421 ctgattgcgt atcatctact ttttgcaatg tttgtctggt cgtattggaa aactatcttt
      481 acattaccaa tgaatccttc aaaagaattc catctctctt atgcagaaaa agaattgcta
      541 gagagagagc caagaggaga agcccatcag gaagttctta ggcgagcagc cagagacctt
      601 cccatctaca ccaggaccat gtctggagca atccgctatt gtgacagatg ccaacttata
      661 aaaccagatc gctgccatca ctgttccgtc tgtgataaat gtattttgaa gatggatcat
      721 cattgcccat gggtgaacaa ttgtgttgga ttttcaaatt ataaattttt cctccttttc
      781 ttggcttatt ctctgctgta ctgccttttt attgctgcta cagatttaca gtattttatc
      841 aaattttgga ccaatggcct acctgatact caagccaagt tccatattat gtttttattc
      901 tttgctgcag ctatgttttc tgtcagcttg tcttctctgt ttggctatca ttgttggcta
      961 gtcagcaaaa ataaatctac attagaggca tttagaagtc cagtatttcg acatggaaca
     1021 gataagaatg gattcagctt gggtttcagt aaaaatatgc gacaggtttt tggtgatgag
     1081 aagaagtact ggttgctacc cattttttca agtctaggtg atggctgctc ctttccaact
     1141 tgccttgtta accaggatcc tgaacagcca tctactcctg caggattgaa ttcatcatct
     1201 aaaaatcctg aaaaccatca atttcctgca aagccattga gagagtccca gagccacctt
     1261 cttactgatt ctcaatcttg gacagagaac agcacaaacc tgggaaaagg taaagctggt
     1321 atgagcaatc ctgcgcttac catggagaat gagaattaac tcttctgaca aaatttaccc
     1381 atacttcacg gaagtaatca gtgctgtcga tggatggaag aggcttcccg caggaaggca
     1441 ccactaacta gctgtttcca ccccctctgg ctggatatgc agaatgtgaa ttgaccgttt
     1501 ctctctgagc tgttgcttaa aacataacac atttttactc cagtatacag attgtttcaa
     1561 ctaacacaaa ttcctcttaa acattaaaag tagttatggt ttatgaatca agacaaaaat
     1621 atcttctatc ataaaaactt ggaataaatt catgggccag ttttcaccca gatatttggg
     1681 gagcacaact taccacataa aaaacccact gatcctctga ttttctgatt cagaaaattg
     1741 agactattaa gatattgaga tttaaaagat ttcacgtaac gttataatga taagctttat
     1801 tcgtaaaacc tgttacctac gagaaggtgg aggtagcaga tgagacttgt ttactccctc
     1861 tgatgtgaat ctagccttag gctgcgtgaa ctgtaaaaac tatgaattca tcacaaattt
     1921 caagtggcct gcagttgaag atgaccatcc tttttttttt tttttttgcc agactttaat
     1981 tctagccttt gttccctgct ggaaaagaag tgtgatcatt gaagcttgag ctcaactggc
     2041 tggaaaatct ttgtcagaat taatacattt ctattacatc agaaatatat ttttcattta
     2101 ttttaattat ctgaaaatgg gggaagtcta taataacaat tatgaagatt ggtttatgat
     2161 attcttttgc tggttaagct tttaaaagtc tctttttagg ttattctatt gaacatagca
     2221 aacattgaat ttttgttaag aatctctgat gggccaatgg attaatcctt cattgacatc
     2281 tatattattt ctttttcctc tcatcagaag tatgacagtt aaactacata ggtcctcaaa
     2341 tacctgttaa gattaaatta tgcagatcat caaacaaaag tcatatcctt ttggaaattt
     2401 agtcccacat gaactgaatg gtgtgctgtt tggaaactga gtttaagata aactacagtg
     2461 gtgtgtttgt tgatgccaaa atgttcggct tcagtaaata tactaagaag ctcttgtgcc
     2521 ttctatgcac tattaaagag tcttattctt ttttaatttg atggggtgca agttttgtaa
     2581 atgttagcaa ttagaataca ctgtatacat ttttttggta ctgattttga gaatttaaag
     2641 cagattaccc tttaagacta cacagctaag gaactggtat ttaaacaaag agaaaatggt
     2701 attaaagttt tcaaaatctg aattagataa attcaacaca aagtagacta gaagaccaga
     2761 ggataatgga gtaacagatc tttgcagttg ctcatccttg ctaaaaatat gaagttttat
     2821 attaaatgac ttcataaaag aaccagtgtc agcccagtcc attttataaa tcatttgagt
     2881 gcaattcttt gagcaatagg atggtggtct ttttcaggtt tttttttttt aaactaaaga
     2941 ttttgatctg acaatctact tcaagaaaac tcggaagata tgatacattc ttacttttat
     3001 cctaaagcat tgtttggtca tcgttttcat tacctgaagt gccaggttgg aacctatagc
     3061 tcctgttaga agtcttaagg gcaagagcat cacataatgt attaagaatt atatgcagcc
     3121 tgatgttttt caaagcacag gactagagct gtttttacgg acaggattct gttgggtgac
     3181 ccctcctgtc aaactagaaa ttaggggaaa aagagggatt tttattcttt accttgctag
     3241 agtactgtta atttcccccc ctccctttag ctctttcatg taattattca aatccataag
     3301 tcaatataca ttagaatcag atgaaaacat ttttcaaaat aaagtttttt ccattaagtt
     3361 gtaatggttc cctttttggt ttcatacagt gactaatctt taaaatgttt tttgtttagt
     3421 tttgttttta actctaaggg gttataattt ttggagatga tggcatatca ttagatttgc
     3481 agtataaatt ttatctgagt gaacagagcg tcaaatagac ctacgttttg tatatattta
     3541 taaaatgtac cttaaaaaca ctttaaacac tttgctttaa aaaatttaat tgcttaactc
     3601 aaacttgaag acacttgaag tatgtcctga cagtccatta aatgataatt ttgatttttt
     3661 cctgttttta gagattatat catataggta tcaatattta agaatttttt tcatttaaaa
     3721 atgttgtaca aatgcttcat attagctatt tgccattgtg cagtgaaaga tttgtttttt
     3781 tcaaagagga aaaaaactgc atctgaatac aatgatgaga cattcaagta agtgcttatc
     3841 tatgaattcc ctcctgttat accataataa agtctggttg atcacctttg ttagctgtct
     3901 atatgaaatt gcctttgcac taacaatcta aattgcttta aagatatact tttcctaatc
     3961 atctaccaga gctcctgcag gcaagattca tgtctacaac ctggttataa cgtaggtctt
     4021 tggagaagtg gatgacagga tgaggtgact gctcattagt agttaaagga gcctgaggac
     4081 aattagaaaa agactgacat ttgagtgtgc tgtaatcagt agatagctgt tggaaatatg
     4141 gcatatgttt gacaaaaaac catcttcact gggaaaatca tacacaaagg tcttataaac
     4201 catgttcata aaaaattaag ctagaaatgt gattcatgct tcaagaaaac ctgtgaaaaa
     4261 gctgctactc ccttatatta taaactagca aattttccct attttgcaat agtacatgta
     4321 aacctgctgg gctgattctt actgtatact gtggtgcaca cttattgtca aatatttacc
     4381 tgtaaaagtg atagttctga tactattatg aatttttttt agaaaagcta ccacgtatat
     4441 tcaaacctca taaaacttaa acgcaaatcc acttacactg taaaccgtga tgaaggtatc
     4501 ctccagtacg accatccccc ttccacagac tacaaattct gatctgctaa cattttgtct
     4561 gaagtgatgc atttcaacaa tggattttcg ctagtaacat acatctctgg tagtgtcccg
     4621 atttgtatca agtggacatc actgaaggga tcagttcaag taggcttgtt tcagaggaac
     4681 tcctgtggat cacaaactat gaagtatctc ccagcacgat gttcagtata gcaggaggtt
     4741 ctgaaatagg atgttttttc catcttccaa aaaaaaggat gcaagaagta gagaatatgg
     4801 atgagccctg gagtaatggc tagaatcaac agaaggacag tctgtataca gatgtatact
     4861 tcaggatgaa ccagaaccaa ggccatacaa atgaccacaa tatttggcat catcaatatg
     4921 atcttcaaag aacatctaaa aaggaatttt ggaagaaaaa aaagataatt ttaaccaaaa
     4981 ggtaccactg gtaatttata tttcagcaat gtaagtactg actgttcatt aactataatg
     5041 acagctcttt tctatggtgc tcctctgaag ccacacattt aaattaaacg tgtaagactg
     5101 actttctcaa gaagtacaga gctcaaaaga aaccaaagaa aaagactacc caaaaaatgt
     5161 ataaacacaa cgcctttcct attaacactc agaccatttt tgagaatttg taacggaaaa
     5221 atggcaggca tttttattcc attaatttaa taatacttaa tcatgagaat gaataaaaat
     5281 agccagtaat gggcagggga ggggaagttt aggtttataa gtagccttga gtctgtgtgc
     5341 aaggctaagt tggctaaaaa caatcaaacc ccaaacatgg ctggacagca aaccctgaac
     5401 attcagatta ggttattatc cttaataaag ccaa
//
LOCUS       XM_032618523            5267 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger DHHC-type
            palmitoyltransferase 2 (ZDHHC2), transcript variant X2, mRNA.
ACCESSION   XM_032618523
VERSION     XM_032618523.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5267
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5267
                     /gene="ZDHHC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 15 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 5 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746801"
     CDS             70..1170
                     /gene="ZDHHC2"
                     /codon_start=1
                     /product="palmitoyltransferase ZDHHC2 isoform X1"
                     /protein_id="XP_032474414.1"
                     /db_xref="GeneID:116746801"
                     /translation="MAPSGPGSVRRRCRRVLYWIPVVFISLLLGWSYYAYAIQLCIVS
                     MENIGEQVVCLIAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKELLEREPRGEA
                     HQEVLRRAARDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVN
                     NCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQAKFHIMFLFFAAA
                     MFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKK
                     YWLLPIFSSLGDGCSFPTCLVNQDPEQPSTPAGLNSSSKNPENHQFPAKPLRESQSHL
                     LTDSQSWTENSTNLGKGKAGMSNPALTMENEN"
     misc_feature    103..972
                     /gene="ZDHHC2"
                     /note="DHHC palmitoyltransferase; Region: DHHC; cl19890"
                     /db_xref="CDD:418707"
ORIGIN      
        1 ccccggagcc aggcccgcgg gcagcagcgg aggcggcggc ggagctgggc aggtggatgc
       61 ggctggaaga tggcgccctc gggcccgggc agcgtcaggc ggcggtgccg gcgggtcctg
      121 tactggatcc ccgtggtgtt tatcagcctc ctgctcggct ggtcctacta cgcctacgcc
      181 atccagctgt gcatagtgtc catggaaaat attggagaac aagttgtgtg cctgattgcg
      241 tatcatctac tttttgcaat gtttgtctgg tcgtattgga aaactatctt tacattacca
      301 atgaatcctt caaaagaatt ccatctctct tatgcagaaa aagaattgct agagagagag
      361 ccaagaggag aagcccatca ggaagttctt aggcgagcag ccagagacct tcccatctac
      421 accaggacca tgtctggagc aatccgctat tgtgacagat gccaacttat aaaaccagat
      481 cgctgccatc actgttccgt ctgtgataaa tgtattttga agatggatca tcattgccca
      541 tgggtgaaca attgtgttgg attttcaaat tataaatttt tcctcctttt cttggcttat
      601 tctctgctgt actgcctttt tattgctgct acagatttac agtattttat caaattttgg
      661 accaatggcc tacctgatac tcaagccaag ttccatatta tgtttttatt ctttgctgca
      721 gctatgtttt ctgtcagctt gtcttctctg tttggctatc attgttggct agtcagcaaa
      781 aataaatcta cattagaggc atttagaagt ccagtatttc gacatggaac agataagaat
      841 ggattcagct tgggtttcag taaaaatatg cgacaggttt ttggtgatga gaagaagtac
      901 tggttgctac ccattttttc aagtctaggt gatggctgct cctttccaac ttgccttgtt
      961 aaccaggatc ctgaacagcc atctactcct gcaggattga attcatcatc taaaaatcct
     1021 gaaaaccatc aatttcctgc aaagccattg agagagtccc agagccacct tcttactgat
     1081 tctcaatctt ggacagagaa cagcacaaac ctgggaaaag gtaaagctgg tatgagcaat
     1141 cctgcgctta ccatggagaa tgagaattaa ctcttctgac aaaatttacc catacttcac
     1201 ggaagtaatc agtgctgtcg atggatggaa gaggcttccc gcaggaaggc accactaact
     1261 agctgtttcc accccctctg gctggatatg cagaatgtga attgaccgtt tctctctgag
     1321 ctgttgctta aaacataaca catttttact ccagtataca gattgtttca actaacacaa
     1381 attcctctta aacattaaaa gtagttatgg tttatgaatc aagacaaaaa tatcttctat
     1441 cataaaaact tggaataaat tcatgggcca gttttcaccc agatatttgg ggagcacaac
     1501 ttaccacata aaaaacccac tgatcctctg attttctgat tcagaaaatt gagactatta
     1561 agatattgag atttaaaaga tttcacgtaa cgttataatg ataagcttta ttcgtaaaac
     1621 ctgttaccta cgagaaggtg gaggtagcag atgagacttg tttactccct ctgatgtgaa
     1681 tctagcctta ggctgcgtga actgtaaaaa ctatgaattc atcacaaatt tcaagtggcc
     1741 tgcagttgaa gatgaccatc cttttttttt ttttttttgc cagactttaa ttctagcctt
     1801 tgttccctgc tggaaaagaa gtgtgatcat tgaagcttga gctcaactgg ctggaaaatc
     1861 tttgtcagaa ttaatacatt tctattacat cagaaatata tttttcattt attttaatta
     1921 tctgaaaatg ggggaagtct ataataacaa ttatgaagat tggtttatga tattcttttg
     1981 ctggttaagc ttttaaaagt ctctttttag gttattctat tgaacatagc aaacattgaa
     2041 tttttgttaa gaatctctga tgggccaatg gattaatcct tcattgacat ctatattatt
     2101 tctttttcct ctcatcagaa gtatgacagt taaactacat aggtcctcaa atacctgtta
     2161 agattaaatt atgcagatca tcaaacaaaa gtcatatcct tttggaaatt tagtcccaca
     2221 tgaactgaat ggtgtgctgt ttggaaactg agtttaagat aaactacagt ggtgtgtttg
     2281 ttgatgccaa aatgttcggc ttcagtaaat atactaagaa gctcttgtgc cttctatgca
     2341 ctattaaaga gtcttattct tttttaattt gatggggtgc aagttttgta aatgttagca
     2401 attagaatac actgtataca tttttttggt actgattttg agaatttaaa gcagattacc
     2461 ctttaagact acacagctaa ggaactggta tttaaacaaa gagaaaatgg tattaaagtt
     2521 ttcaaaatct gaattagata aattcaacac aaagtagact agaagaccag aggataatgg
     2581 agtaacagat ctttgcagtt gctcatcctt gctaaaaata tgaagtttta tattaaatga
     2641 cttcataaaa gaaccagtgt cagcccagtc cattttataa atcatttgag tgcaattctt
     2701 tgagcaatag gatggtggtc tttttcaggt tttttttttt taaactaaag attttgatct
     2761 gacaatctac ttcaagaaaa ctcggaagat atgatacatt cttactttta tcctaaagca
     2821 ttgtttggtc atcgttttca ttacctgaag tgccaggttg gaacctatag ctcctgttag
     2881 aagtcttaag ggcaagagca tcacataatg tattaagaat tatatgcagc ctgatgtttt
     2941 tcaaagcaca ggactagagc tgtttttacg gacaggattc tgttgggtga cccctcctgt
     3001 caaactagaa attaggggaa aaagagggat ttttattctt taccttgcta gagtactgtt
     3061 aatttccccc cctcccttta gctctttcat gtaattattc aaatccataa gtcaatatac
     3121 attagaatca gatgaaaaca tttttcaaaa taaagttttt tccattaagt tgtaatggtt
     3181 ccctttttgg tttcatacag tgactaatct ttaaaatgtt ttttgtttag ttttgttttt
     3241 aactctaagg ggttataatt tttggagatg atggcatatc attagatttg cagtataaat
     3301 tttatctgag tgaacagagc gtcaaataga cctacgtttt gtatatattt ataaaatgta
     3361 ccttaaaaac actttaaaca ctttgcttta aaaaatttaa ttgcttaact caaacttgaa
     3421 gacacttgaa gtatgtcctg acagtccatt aaatgataat tttgattttt tcctgttttt
     3481 agagattata tcatataggt atcaatattt aagaattttt ttcatttaaa aatgttgtac
     3541 aaatgcttca tattagctat ttgccattgt gcagtgaaag atttgttttt ttcaaagagg
     3601 aaaaaaactg catctgaata caatgatgag acattcaagt aagtgcttat ctatgaattc
     3661 cctcctgtta taccataata aagtctggtt gatcaccttt gttagctgtc tatatgaaat
     3721 tgcctttgca ctaacaatct aaattgcttt aaagatatac ttttcctaat catctaccag
     3781 agctcctgca ggcaagattc atgtctacaa cctggttata acgtaggtct ttggagaagt
     3841 ggatgacagg atgaggtgac tgctcattag tagttaaagg agcctgagga caattagaaa
     3901 aagactgaca tttgagtgtg ctgtaatcag tagatagctg ttggaaatat ggcatatgtt
     3961 tgacaaaaaa ccatcttcac tgggaaaatc atacacaaag gtcttataaa ccatgttcat
     4021 aaaaaattaa gctagaaatg tgattcatgc ttcaagaaaa cctgtgaaaa agctgctact
     4081 cccttatatt ataaactagc aaattttccc tattttgcaa tagtacatgt aaacctgctg
     4141 ggctgattct tactgtatac tgtggtgcac acttattgtc aaatatttac ctgtaaaagt
     4201 gatagttctg atactattat gaattttttt tagaaaagct accacgtata ttcaaacctc
     4261 ataaaactta aacgcaaatc cacttacact gtaaaccgtg atgaaggtat cctccagtac
     4321 gaccatcccc cttccacaga ctacaaattc tgatctgcta acattttgtc tgaagtgatg
     4381 catttcaaca atggattttc gctagtaaca tacatctctg gtagtgtccc gatttgtatc
     4441 aagtggacat cactgaaggg atcagttcaa gtaggcttgt ttcagaggaa ctcctgtgga
     4501 tcacaaacta tgaagtatct cccagcacga tgttcagtat agcaggaggt tctgaaatag
     4561 gatgtttttt ccatcttcca aaaaaaagga tttctttaaa aaaatatact taggcaagaa
     4621 gtagagaata tggatgagcc ctggagtaat ggctagaatc aacagaagga cagtctgtat
     4681 acagatgtat acttcaggat gaaccagaac caaggccata caaatgacca caatatttgg
     4741 catcatcaat atgatcttca aagaacatct aaaaaggaat tttggaagaa aaaaaagata
     4801 attttaacca aaaggtacca ctggtaattt atatttcagc aatgtaagta ctgactgttc
     4861 attaactata atgacagctc ttttctatgg tgctcctctg aagccacaca tttaaattaa
     4921 acgtgtaaga ctgactttct caagaagtac agagctcaaa agaaaccaaa gaaaaagact
     4981 acccaaaaaa tgtataaaca caacgccttt cctattaaca ctcagaccat ttttgagaat
     5041 ttgtaacgga aaaatggcag gcatttttat tccattaatt taataatact taatcatgag
     5101 aatgaataaa aatagccagt aatgggcagg ggaggggaag tttaggttta taagtagcct
     5161 tgagtctgtg tgcaaggcta agttggctaa aaacaatcaa accccaaaca tggctggaca
     5221 gcaaaccctg aacattcaga ttaggttatt atccttaata aagccaa
//
LOCUS       XM_032618524            5425 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger DHHC-type
            palmitoyltransferase 2 (ZDHHC2), transcript variant X3, mRNA.
ACCESSION   XM_032618524
VERSION     XM_032618524.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5425
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5425
                     /gene="ZDHHC2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746801"
     CDS             259..1350
                     /gene="ZDHHC2"
                     /codon_start=1
                     /product="palmitoyltransferase ZDHHC2 isoform X2"
                     /protein_id="XP_032474415.1"
                     /db_xref="GeneID:116746801"
                     /translation="MAPSGPGSVRRRCRRVLYWIPVVFISLLLGWSYYAYAIQLCIVS
                     MENIGEQVVCLIAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKELLEREPRGEA
                     HQEVLRRAARDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVN
                     NCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQAKFHIMFLFFAAA
                     MFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKK
                     YWLLPIFSSLGDGCSFPTCLVNQDPEQPSTPAGLNSSSKNPENHQFPAKPLRESQSHL
                     LTDSQSWTENSTNLGKGMSNPALTMENEN"
     misc_feature    292..1161
                     /gene="ZDHHC2"
                     /note="DHHC palmitoyltransferase; Region: DHHC; cl19890"
                     /db_xref="CDD:418707"
ORIGIN      
        1 accgtccgcc ttctccgcgc cctcctttcg cagccaccgc ctccgccgga cggaggagcc
       61 gagagtctgc ggcgccggct tggggctgcg ggatggggag ttagcgccac ggcggcggca
      121 gcggccgcgg cgcaaccggc cgccgccccc gggcccgtcc cgctggggac gccgggcgcg
      181 gccagccagc cccggagcca ggcccgcggg cagcagcgga ggcggcggcg gagctgggca
      241 ggtggatgcg gctggaagat ggcgccctcg ggcccgggca gcgtcaggcg gcggtgccgg
      301 cgggtcctgt actggatccc cgtggtgttt atcagcctcc tgctcggctg gtcctactac
      361 gcctacgcca tccagctgtg catagtgtcc atggaaaata ttggagaaca agttgtgtgc
      421 ctgattgcgt atcatctact ttttgcaatg tttgtctggt cgtattggaa aactatcttt
      481 acattaccaa tgaatccttc aaaagaattc catctctctt atgcagaaaa agaattgcta
      541 gagagagagc caagaggaga agcccatcag gaagttctta ggcgagcagc cagagacctt
      601 cccatctaca ccaggaccat gtctggagca atccgctatt gtgacagatg ccaacttata
      661 aaaccagatc gctgccatca ctgttccgtc tgtgataaat gtattttgaa gatggatcat
      721 cattgcccat gggtgaacaa ttgtgttgga ttttcaaatt ataaattttt cctccttttc
      781 ttggcttatt ctctgctgta ctgccttttt attgctgcta cagatttaca gtattttatc
      841 aaattttgga ccaatggcct acctgatact caagccaagt tccatattat gtttttattc
      901 tttgctgcag ctatgttttc tgtcagcttg tcttctctgt ttggctatca ttgttggcta
      961 gtcagcaaaa ataaatctac attagaggca tttagaagtc cagtatttcg acatggaaca
     1021 gataagaatg gattcagctt gggtttcagt aaaaatatgc gacaggtttt tggtgatgag
     1081 aagaagtact ggttgctacc cattttttca agtctaggtg atggctgctc ctttccaact
     1141 tgccttgtta accaggatcc tgaacagcca tctactcctg caggattgaa ttcatcatct
     1201 aaaaatcctg aaaaccatca atttcctgca aagccattga gagagtccca gagccacctt
     1261 cttactgatt ctcaatcttg gacagagaac agcacaaacc tgggaaaagg tatgagcaat
     1321 cctgcgctta ccatggagaa tgagaattaa ctcttctgac aaaatttacc catacttcac
     1381 ggaagtaatc agtgctgtcg atggatggaa gaggcttccc gcaggaaggc accactaact
     1441 agctgtttcc accccctctg gctggatatg cagaatgtga attgaccgtt tctctctgag
     1501 ctgttgctta aaacataaca catttttact ccagtataca gattgtttca actaacacaa
     1561 attcctctta aacattaaaa gtagttatgg tttatgaatc aagacaaaaa tatcttctat
     1621 cataaaaact tggaataaat tcatgggcca gttttcaccc agatatttgg ggagcacaac
     1681 ttaccacata aaaaacccac tgatcctctg attttctgat tcagaaaatt gagactatta
     1741 agatattgag atttaaaaga tttcacgtaa cgttataatg ataagcttta ttcgtaaaac
     1801 ctgttaccta cgagaaggtg gaggtagcag atgagacttg tttactccct ctgatgtgaa
     1861 tctagcctta ggctgcgtga actgtaaaaa ctatgaattc atcacaaatt tcaagtggcc
     1921 tgcagttgaa gatgaccatc cttttttttt ttttttttgc cagactttaa ttctagcctt
     1981 tgttccctgc tggaaaagaa gtgtgatcat tgaagcttga gctcaactgg ctggaaaatc
     2041 tttgtcagaa ttaatacatt tctattacat cagaaatata tttttcattt attttaatta
     2101 tctgaaaatg ggggaagtct ataataacaa ttatgaagat tggtttatga tattcttttg
     2161 ctggttaagc ttttaaaagt ctctttttag gttattctat tgaacatagc aaacattgaa
     2221 tttttgttaa gaatctctga tgggccaatg gattaatcct tcattgacat ctatattatt
     2281 tctttttcct ctcatcagaa gtatgacagt taaactacat aggtcctcaa atacctgtta
     2341 agattaaatt atgcagatca tcaaacaaaa gtcatatcct tttggaaatt tagtcccaca
     2401 tgaactgaat ggtgtgctgt ttggaaactg agtttaagat aaactacagt ggtgtgtttg
     2461 ttgatgccaa aatgttcggc ttcagtaaat atactaagaa gctcttgtgc cttctatgca
     2521 ctattaaaga gtcttattct tttttaattt gatggggtgc aagttttgta aatgttagca
     2581 attagaatac actgtataca tttttttggt actgattttg agaatttaaa gcagattacc
     2641 ctttaagact acacagctaa ggaactggta tttaaacaaa gagaaaatgg tattaaagtt
     2701 ttcaaaatct gaattagata aattcaacac aaagtagact agaagaccag aggataatgg
     2761 agtaacagat ctttgcagtt gctcatcctt gctaaaaata tgaagtttta tattaaatga
     2821 cttcataaaa gaaccagtgt cagcccagtc cattttataa atcatttgag tgcaattctt
     2881 tgagcaatag gatggtggtc tttttcaggt tttttttttt taaactaaag attttgatct
     2941 gacaatctac ttcaagaaaa ctcggaagat atgatacatt cttactttta tcctaaagca
     3001 ttgtttggtc atcgttttca ttacctgaag tgccaggttg gaacctatag ctcctgttag
     3061 aagtcttaag ggcaagagca tcacataatg tattaagaat tatatgcagc ctgatgtttt
     3121 tcaaagcaca ggactagagc tgtttttacg gacaggattc tgttgggtga cccctcctgt
     3181 caaactagaa attaggggaa aaagagggat ttttattctt taccttgcta gagtactgtt
     3241 aatttccccc cctcccttta gctctttcat gtaattattc aaatccataa gtcaatatac
     3301 attagaatca gatgaaaaca tttttcaaaa taaagttttt tccattaagt tgtaatggtt
     3361 ccctttttgg tttcatacag tgactaatct ttaaaatgtt ttttgtttag ttttgttttt
     3421 aactctaagg ggttataatt tttggagatg atggcatatc attagatttg cagtataaat
     3481 tttatctgag tgaacagagc gtcaaataga cctacgtttt gtatatattt ataaaatgta
     3541 ccttaaaaac actttaaaca ctttgcttta aaaaatttaa ttgcttaact caaacttgaa
     3601 gacacttgaa gtatgtcctg acagtccatt aaatgataat tttgattttt tcctgttttt
     3661 agagattata tcatataggt atcaatattt aagaattttt ttcatttaaa aatgttgtac
     3721 aaatgcttca tattagctat ttgccattgt gcagtgaaag atttgttttt ttcaaagagg
     3781 aaaaaaactg catctgaata caatgatgag acattcaagt aagtgcttat ctatgaattc
     3841 cctcctgtta taccataata aagtctggtt gatcaccttt gttagctgtc tatatgaaat
     3901 tgcctttgca ctaacaatct aaattgcttt aaagatatac ttttcctaat catctaccag
     3961 agctcctgca ggcaagattc atgtctacaa cctggttata acgtaggtct ttggagaagt
     4021 ggatgacagg atgaggtgac tgctcattag tagttaaagg agcctgagga caattagaaa
     4081 aagactgaca tttgagtgtg ctgtaatcag tagatagctg ttggaaatat ggcatatgtt
     4141 tgacaaaaaa ccatcttcac tgggaaaatc atacacaaag gtcttataaa ccatgttcat
     4201 aaaaaattaa gctagaaatg tgattcatgc ttcaagaaaa cctgtgaaaa agctgctact
     4261 cccttatatt ataaactagc aaattttccc tattttgcaa tagtacatgt aaacctgctg
     4321 ggctgattct tactgtatac tgtggtgcac acttattgtc aaatatttac ctgtaaaagt
     4381 gatagttctg atactattat gaattttttt tagaaaagct accacgtata ttcaaacctc
     4441 ataaaactta aacgcaaatc cacttacact gtaaaccgtg atgaaggtat cctccagtac
     4501 gaccatcccc cttccacaga ctacaaattc tgatctgcta acattttgtc tgaagtgatg
     4561 catttcaaca atggattttc gctagtaaca tacatctctg gtagtgtccc gatttgtatc
     4621 aagtggacat cactgaaggg atcagttcaa gtaggcttgt ttcagaggaa ctcctgtgga
     4681 tcacaaacta tgaagtatct cccagcacga tgttcagtat agcaggaggt tctgaaatag
     4741 gatgtttttt ccatcttcca aaaaaaagga tgcaagaagt agagaatatg gatgagccct
     4801 ggagtaatgg ctagaatcaa cagaaggaca gtctgtatac agatgtatac ttcaggatga
     4861 accagaacca aggccataca aatgaccaca atatttggca tcatcaatat gatcttcaaa
     4921 gaacatctaa aaaggaattt tggaagaaaa aaaagataat tttaaccaaa aggtaccact
     4981 ggtaatttat atttcagcaa tgtaagtact gactgttcat taactataat gacagctctt
     5041 ttctatggtg ctcctctgaa gccacacatt taaattaaac gtgtaagact gactttctca
     5101 agaagtacag agctcaaaag aaaccaaaga aaaagactac ccaaaaaatg tataaacaca
     5161 acgcctttcc tattaacact cagaccattt ttgagaattt gtaacggaaa aatggcaggc
     5221 atttttattc cattaattta ataatactta atcatgagaa tgaataaaaa tagccagtaa
     5281 tgggcagggg aggggaagtt taggtttata agtagccttg agtctgtgtg caaggctaag
     5341 ttggctaaaa acaatcaaac cccaaacatg gctggacagc aaaccctgaa cattcagatt
     5401 aggttattat ccttaataaa gccaa
//
LOCUS       XM_032618525            4060 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CCR4-NOT transcription complex subunit 7
            (CNOT7), transcript variant X1, mRNA.
ACCESSION   XM_032618525
VERSION     XM_032618525.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4060
                     /gene="CNOT7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 15 long SRA reads, 25
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746802"
     CDS             916..1773
                     /gene="CNOT7"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 7"
                     /protein_id="XP_032474416.1"
                     /db_xref="GeneID:116746802"
                     /translation="MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFP
                     GVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFN
                     LTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGY
                     DFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLEL
                     ERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA
                     YEEEANKQS"
     misc_feature    916..1752
                     /gene="CNOT7"
                     /note="CAF1 family ribonuclease; Region: CAF1; cl23804"
                     /db_xref="CDD:474062"
ORIGIN      
        1 caagcgtgag aggcaggacg aagggaggta ggtcaaaagg cggcagctgg cgggagtcgg
       61 cctgaggagc tgcgagtgta gttaggacca gcccgccctc ccgccctact ttttcttcct
      121 gtcggagagg cggcgaccag tcacctggag tgtgagttcc ggagggactc gatcagccgc
      181 tgcttctgct gttggaggct ggtgagacca ccgggggacc cagccgcgga ggaggaggcg
      241 ctcttggtca ggggaaagag ccagctcatc ctccacgggt ccccgggccc gaggccctag
      301 aaggctctgg cctgcttctc ccagctgctc agcccggcgg ttccccagcg acagaggagg
      361 agcgggcagg gacgtcccag cccaagtgct ggggagccgc gtcttctcta agcaaacccg
      421 gccgggggtc ctcggggtca ggggggaatg ctctgtctgc ggacagctgg agacagggaa
      481 ctcgccgccc gggaccggca gtcctccctt cactgccctg acgccccaac cagccagtca
      541 ggacgcctga ccgcgcagct ctccaccacc ccagcttccg tcacctgcgt gccccgccct
      601 ctctgcgtgt cgcgtcatca tctggcgccc ccgcccggac gtgcgagaag cgacggcgca
      661 gcgcggtgcg gcgcagctcc ggctcccctt tcccccttgc cgggcgagag gtgtctatgg
      721 ggcacccgcc gccgccgccg tcgttgccgc cacccccgcc gccgctgggt gctgtctcta
      781 tggcgaggag gaggaggaga agtgcgagct cagcgacaca agtacataaa taaaggataa
      841 agtattttac gaaacaaatc ttcaatcaag tataacattt tgatgcttgg cagctagact
      901 ccttgtgccc tcactatgcc agcagcgact gtagatcata gccaaagaat ttgtgaagtt
      961 tgggcttgca acctggatga agagatgaag aaaattcgtc aagttatccg aaaatataat
     1021 tacgttgcta tggacaccga gtttccaggt gtggttgcaa gacccattgg agaattcagg
     1081 agcaatgctg actatcagta ccaactattg cggtgtaatg tggacttgtt gaagataatt
     1141 cagctaggac tgacatttat gaatgagcaa ggagaatacc ctccaggaac ttcaacttgg
     1201 cagtttaatt ttaaatttaa tttgacggag gacatgtatg cccaagactc tatagagcta
     1261 ctaacaacat ctggtatcca gtttaaaaaa catgaggagg aaggaattga gacccagtac
     1321 tttgcagaac ttcttatgac atcaggagta gtcctctgtg aaggggtcaa atggttatca
     1381 tttcatagtg gttatgactt tggctactta atcaaaatcc tgaccaattc taacttgcct
     1441 gaagaagaac ttgacttttt tgagatcctt cgattgtttt ttcctgtcat ttatgatgtg
     1501 aagtacctca tgaagagctg caaaaatctc aaaggtggtt tacaggaagt tgctgaacag
     1561 ttagagctgg aacggatagg accacagcat caggcaggat ctgactcatt gctcacagga
     1621 atggcctttt tcaaaatgag agaaatgttc tttgaagatc atattgatga tgccaaatat
     1681 tgtggtcatt tgtatggcct tggttctggt tcatcctatg tacagaatgg cacagggaat
     1741 gcatatgaag aggaagccaa caagcagtca tgacatgaaa tagttctttt atttttattt
     1801 tatttgagct acgcacatgc ttgtatatag gttttatctc tggttgaatc ccttgaacaa
     1861 tagacattac tgttttttct ctcatagctc attttatttt ctgcctttca gtactaagta
     1921 tgaccattcc tatctcagat cttaataaat agaaaagcat tcaggttaaa tctggcctta
     1981 atatacttgt tagtaggcgt gtgtgacaga gtggggaaag ctattcagta catcatattg
     2041 aatactttga tcaacattac ttacttgagc ttgggttttt tccctttcct aaattaacta
     2101 gcactgactg taatttattt ccctgtttca tgtctccctt ccattctgca ggagttttag
     2161 ctatttgaga ttgtggacca tcaattttgc actttagaga gtgattctga ctcaaatcct
     2221 ctgttttatc agcagttttg gcttttcttg ctcttagctg gaaaaacgac catctgccaa
     2281 ctttatacag tatttacttg cttttgaccc acagaatata gaacatgcat tgtgcaaatg
     2341 gttgattcag caagactaca aaaaaaaaaa agacaaaaaa aactactgag gagcttagta
     2401 actgctgttt ctgtacgtag tacttaatct cccaagcaca tctcgtgtct gtcggtttct
     2461 aattggcatg tgtaggctgc tctgtgacgg aagaactttt caaaccagct ttacaccctt
     2521 caggaaaaat cctttgtgat tggatgttta gtgtctgccc ggaaactggt atccaagatg
     2581 ttgaagctgc ggttatttta tgatagcaca cttcccttga tctgcttctt tttattccat
     2641 cgctatttac ccttattttt aattttaaaa aattttatag ccatacctaa tgatgctctt
     2701 gatttgttga ttacacaaat caatttcatt aaaatccaaa gattgcaagt ctttaggtat
     2761 attttgtacc agattaaatt agaagacaaa aaatttgtgc tttcatagtt gctacaaata
     2821 taaataatgg agagatttgg tgcaaaacaa caaaatacaa aaaatataaa tttattagct
     2881 atatacagtg tagctaataa aattacctga ggagtgtaat gcttgtttat ttttttgtgt
     2941 atatctttgc aatctatttt atatatattg acaaaagaga ctgtgaaata cttagccatg
     3001 cagaatatgt gaccagatca gagcatgtgt aggaagacac tttggtaatc attaactctg
     3061 ccctgaaatg atggactaca agttatgatg tgtgttatct gcacttcaat cagtagtatt
     3121 agcaaatctc caaatgttag ccacattggt ttgtttccct tgtccattct ttattcatga
     3181 tacttcaatg ctgtaaactg ggtggtcctt tttaaacaaa acatttgtga aacagaggga
     3241 ttgtttttaa agcttttgta aataaaggct tcagaaatgt tttcttatat atgttgatga
     3301 ctagtaattt tgtttcagaa atatttgggg gctgttgtgg gttttttttt ttaatttggg
     3361 caactgaaca taactcagta acttcattaa ctagatgatt tttaatctct taattgaaaa
     3421 aatcaacctg agccttctac atttcaacag tgttggctta ttttttaatg catacttcaa
     3481 ctagatgtta agactggact tctgtctccc catttattct gaaagatgta caaagtaaat
     3541 gcatttggta taacttactg tggcttcttt taaagtcaaa cacaaattag ctatctaatt
     3601 ggtttctttt tcttttgatc ttttataaag attgcctttt aaatagccat gtagttgctg
     3661 aatttcagtt tgtagttgct gaatttcaga gtttgtatca attttttggt tttggtttct
     3721 gtctccaaga actaatatat tttataactt ctaaaagagg aacattataa cctttactaa
     3781 acctagcttt tggataaaag atattcgatc attttttcat gttcctaagc cattaattct
     3841 ggacttaacc atattctgtt aagtctacta cagcaagaat cagcaaacta tggcctactg
     3901 atcaaaacca gcctgctgcc tgtattttgt atggccagtg acatgagaat ggattttaca
     3961 gtttttaaat ggttgggggg aaaaaaagag catttcctga catgtgaaaa ttatgaaatt
     4021 caacatttag tgtccacaaa taaagtttta ttggattgca
//
LOCUS       XM_032618526            4943 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CCR4-NOT transcription complex subunit 7
            (CNOT7), transcript variant X2, mRNA.
ACCESSION   XM_032618526
VERSION     XM_032618526.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4943
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4943
                     /gene="CNOT7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 25 Proteins,
                     and 94% coverage of the annotated genomic feature by
                     RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746802"
     CDS             1799..2656
                     /gene="CNOT7"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 7"
                     /protein_id="XP_032474417.1"
                     /db_xref="GeneID:116746802"
                     /translation="MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFP
                     GVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFN
                     LTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGY
                     DFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLEL
                     ERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA
                     YEEEANKQS"
     misc_feature    1799..2635
                     /gene="CNOT7"
                     /note="CAF1 family ribonuclease; Region: CAF1; cl23804"
                     /db_xref="CDD:474062"
ORIGIN      
        1 gaagggaggt aggtcaaaag gcggcagctg gcgggagtcg gcctgaggag ctgcgagtgt
       61 agttaggacc agcccgccct cccgccctac tttttcttcc tgtcggagag gcggcgacca
      121 gtcacctgga gtgtgagttc cggagggact cgatcagccg ctgcttctgc tgttggaggc
      181 tggtgagacc accgggggac ccagccgcgg aggaggaggc gctcttggtc aggggaaaga
      241 gccagctcat cctccacggg tccccgggcc cgaggcccta gaaggctctg gcctgcttct
      301 cccagctgct cagcccggcg gttccccagc gacagaggag gagcgggcag ggacgtccca
      361 gcccaagtgc tggggagccg cgtcttctct aagcaaaccc ggccgggggt cctcggggtc
      421 aggggggaat gctctgtctg cggacagctg gagacaggga actcgccgcc cgggaccggc
      481 agtcctccct tcactgccct gacgccccaa ccagccagtc aggacgcctg accgcgcagc
      541 tctccaccac cccagcttcc gtcacctgcg tgccccgccc tctctgcgtg tcgcgtcatc
      601 atctggcgcc cccgcccgga cgtgcgagaa gcgacggcgc agcgcggtgc ggcgcagctc
      661 cggctcccct ttcccccttg ccgggcgaga ggtgtctatg gggcacccgc cgccgccgcc
      721 gtcgttgccg ccacccccgc cgccgctggg tgctgtctct atggcgagga ggaggaggag
      781 aagtgcgagc tcagcgacac aagtagatct tgccacagac ttgcgggggg aggggcgggt
      841 tggagaagta gaaagggggc gggaatgacg aacctaagcg ggtgcgcgat ggcgccagct
      901 ggagtgcagc tggctaacga aagggctggg cggcgggtgg agggggaggg taactgggac
      961 tggggggtat gtcaacgggg tggcgcagag tgatgacgcg aaggctttgt acctggtgct
     1021 tcaatgctgt ggggcggaaa ttgggagtgg agggcggtgg cctagatcct tagcttctcg
     1081 tattccttca cgcagcggtg cttgggagtc catccggctc cggtcaatgg ttatcagtac
     1141 cttcgctctg gctttctgcc agggaagaga gttatctgtg acttgagtgt gtctgtactg
     1201 tcttggcgtt tcgttgggaa cccgctgttc ggagatgtgt gtctgtactg tcctcgcgtt
     1261 tcgttgggaa ccagctgttc ggagatgcta cctccagtaa agagagggcc tctgatgcct
     1321 cttcggcgct tctggaactg tagtagagag aggtggagga aagcaatgtt caactacagg
     1381 gtctttccac tgtgtgtgtt tgtgtttagt gaagagggtt ataaaggaag gggccctgga
     1441 tctttcctgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     1501 gtgtttagcg aagagggtta taaaggaagg agcccctgga tctttggttt ctgttcttag
     1561 agcactcgag gttacatttg tgactgcaga gtttagaagg ggaggtcata attccctttt
     1621 ttacattttc tgttatgatt tttttcaaag ttgtgtgaaa aatgaaagcg catctggaat
     1681 ttccctgctc aagaatcaat gttggtacat aaataaagga taaagtattt tacgaaacaa
     1741 atcttcaatc aagtataaca ttttgatgct tggcagctag actccttgtg ccctcactat
     1801 gccagcagcg actgtagatc atagccaaag aatttgtgaa gtttgggctt gcaacctgga
     1861 tgaagagatg aagaaaattc gtcaagttat ccgaaaatat aattacgttg ctatggacac
     1921 cgagtttcca ggtgtggttg caagacccat tggagaattc aggagcaatg ctgactatca
     1981 gtaccaacta ttgcggtgta atgtggactt gttgaagata attcagctag gactgacatt
     2041 tatgaatgag caaggagaat accctccagg aacttcaact tggcagttta attttaaatt
     2101 taatttgacg gaggacatgt atgcccaaga ctctatagag ctactaacaa catctggtat
     2161 ccagtttaaa aaacatgagg aggaaggaat tgagacccag tactttgcag aacttcttat
     2221 gacatcagga gtagtcctct gtgaaggggt caaatggtta tcatttcata gtggttatga
     2281 ctttggctac ttaatcaaaa tcctgaccaa ttctaacttg cctgaagaag aacttgactt
     2341 ttttgagatc cttcgattgt tttttcctgt catttatgat gtgaagtacc tcatgaagag
     2401 ctgcaaaaat ctcaaaggtg gtttacagga agttgctgaa cagttagagc tggaacggat
     2461 aggaccacag catcaggcag gatctgactc attgctcaca ggaatggcct ttttcaaaat
     2521 gagagaaatg ttctttgaag atcatattga tgatgccaaa tattgtggtc atttgtatgg
     2581 ccttggttct ggttcatcct atgtacagaa tggcacaggg aatgcatatg aagaggaagc
     2641 caacaagcag tcatgacatg aaatagttct tttattttta ttttatttga gctacgcaca
     2701 tgcttgtata taggttttat ctctggttga atcccttgaa caatagacat tactgttttt
     2761 tctctcatag ctcattttat tttctgcctt tcagtactaa gtatgaccat tcctatctca
     2821 gatcttaata aatagaaaag cattcaggtt aaatctggcc ttaatatact tgttagtagg
     2881 cgtgtgtgac agagtgggga aagctattca gtacatcata ttgaatactt tgatcaacat
     2941 tacttacttg agcttgggtt ttttcccttt cctaaattaa ctagcactga ctgtaattta
     3001 tttccctgtt tcatgtctcc cttccattct gcaggagttt tagctatttg agattgtgga
     3061 ccatcaattt tgcactttag agagtgattc tgactcaaat cctctgtttt atcagcagtt
     3121 ttggcttttc ttgctcttag ctggaaaaac gaccatctgc caactttata cagtatttac
     3181 ttgcttttga cccacagaat atagaacatg cattgtgcaa atggttgatt cagcaagact
     3241 acaaaaaaaa aaaagacaaa aaaaactact gaggagctta gtaactgctg tttctgtacg
     3301 tagtacttaa tctcccaagc acatctcgtg tctgtcggtt tctaattggc atgtgtaggc
     3361 tgctctgtga cggaagaact tttcaaacca gctttacacc cttcaggaaa aatcctttgt
     3421 gattggatgt ttagtgtctg cccggaaact ggtatccaag atgttgaagc tgcggttatt
     3481 ttatgatagc acacttccct tgatctgctt ctttttattc catcgctatt tacccttatt
     3541 tttaatttta aaaaatttta tagccatacc taatgatgct cttgatttgt tgattacaca
     3601 aatcaatttc attaaaatcc aaagattgca agtctttagg tatattttgt accagattaa
     3661 attagaagac aaaaaatttg tgctttcata gttgctacaa atataaataa tggagagatt
     3721 tggtgcaaaa caacaaaata caaaaaatat aaatttatta gctatataca gtgtagctaa
     3781 taaaattacc tgaggagtgt aatgcttgtt tatttttttg tgtatatctt tgcaatctat
     3841 tttatatata ttgacaaaag agactgtgaa atacttagcc atgcagaata tgtgaccaga
     3901 tcagagcatg tgtaggaaga cactttggta atcattaact ctgccctgaa atgatggact
     3961 acaagttatg atgtgtgtta tctgcacttc aatcagtagt attagcaaat ctccaaatgt
     4021 tagccacatt ggtttgtttc ccttgtccat tctttattca tgatacttca atgctgtaaa
     4081 ctgggtggtc ctttttaaac aaaacatttg tgaaacagag ggattgtttt taaagctttt
     4141 gtaaataaag gcttcagaaa tgttttctta tatatgttga tgactagtaa ttttgtttca
     4201 gaaatatttg ggggctgttg tgggtttttt tttttaattt gggcaactga acataactca
     4261 gtaacttcat taactagatg atttttaatc tcttaattga aaaaatcaac ctgagccttc
     4321 tacatttcaa cagtgttggc ttatttttta atgcatactt caactagatg ttaagactgg
     4381 acttctgtct ccccatttat tctgaaagat gtacaaagta aatgcatttg gtataactta
     4441 ctgtggcttc ttttaaagtc aaacacaaat tagctatcta attggtttct ttttcttttg
     4501 atcttttata aagattgcct tttaaatagc catgtagttg ctgaatttca gtttgtagtt
     4561 gctgaatttc agagtttgta tcaatttttt ggttttggtt tctgtctcca agaactaata
     4621 tattttataa cttctaaaag aggaacatta taacctttac taaacctagc ttttggataa
     4681 aagatattcg atcatttttt catgttccta agccattaat tctggactta accatattct
     4741 gttaagtcta ctacagcaag aatcagcaaa ctatggccta ctgatcaaaa ccagcctgct
     4801 gcctgtattt tgtatggcca gtgacatgag aatggatttt acagttttta aatggttggg
     4861 gggaaaaaaa gagcatttcc tgacatgtga aaattatgaa attcaacatt tagtgtccac
     4921 aaataaagtt ttattggatt gca
//
LOCUS       XM_032618527            3424 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CCR4-NOT transcription complex subunit 7
            (CNOT7), transcript variant X3, mRNA.
ACCESSION   XM_032618527
VERSION     XM_032618527.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3424
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3424
                     /gene="CNOT7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 25 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:116746802"
     CDS             280..1137
                     /gene="CNOT7"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 7"
                     /protein_id="XP_032474418.1"
                     /db_xref="GeneID:116746802"
                     /translation="MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFP
                     GVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFN
                     LTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGY
                     DFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLEL
                     ERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA
                     YEEEANKQS"
     misc_feature    280..1116
                     /gene="CNOT7"
                     /note="CAF1 family ribonuclease; Region: CAF1; cl23804"
                     /db_xref="CDD:474062"
ORIGIN      
        1 atcatctggc gcccccgccc ggacgtgcga gaagcgacgg cgcagcgcgg tgcggcgcag
       61 ctccggctcc cctttccccc ttgccgggcg agaggtgtct atggggcacc cgccgccgcc
      121 gccgtcgttg ccgccacccc cgccgccgct gggtgctgtc tctatggcga ggaggaggag
      181 gagaagtaca taaataaagg ataaagtatt ttacgaaaca aatcttcaat caagtataac
      241 attttgatgc ttggcagcta gactccttgt gccctcacta tgccagcagc gactgtagat
      301 catagccaaa gaatttgtga agtttgggct tgcaacctgg atgaagagat gaagaaaatt
      361 cgtcaagtta tccgaaaata taattacgtt gctatggaca ccgagtttcc aggtgtggtt
      421 gcaagaccca ttggagaatt caggagcaat gctgactatc agtaccaact attgcggtgt
      481 aatgtggact tgttgaagat aattcagcta ggactgacat ttatgaatga gcaaggagaa
      541 taccctccag gaacttcaac ttggcagttt aattttaaat ttaatttgac ggaggacatg
      601 tatgcccaag actctataga gctactaaca acatctggta tccagtttaa aaaacatgag
      661 gaggaaggaa ttgagaccca gtactttgca gaacttctta tgacatcagg agtagtcctc
      721 tgtgaagggg tcaaatggtt atcatttcat agtggttatg actttggcta cttaatcaaa
      781 atcctgacca attctaactt gcctgaagaa gaacttgact tttttgagat ccttcgattg
      841 ttttttcctg tcatttatga tgtgaagtac ctcatgaaga gctgcaaaaa tctcaaaggt
      901 ggtttacagg aagttgctga acagttagag ctggaacgga taggaccaca gcatcaggca
      961 ggatctgact cattgctcac aggaatggcc tttttcaaaa tgagagaaat gttctttgaa
     1021 gatcatattg atgatgccaa atattgtggt catttgtatg gccttggttc tggttcatcc
     1081 tatgtacaga atggcacagg gaatgcatat gaagaggaag ccaacaagca gtcatgacat
     1141 gaaatagttc ttttattttt attttatttg agctacgcac atgcttgtat ataggtttta
     1201 tctctggttg aatcccttga acaatagaca ttactgtttt ttctctcata gctcatttta
     1261 ttttctgcct ttcagtacta agtatgacca ttcctatctc agatcttaat aaatagaaaa
     1321 gcattcaggt taaatctggc cttaatatac ttgttagtag gcgtgtgtga cagagtgggg
     1381 aaagctattc agtacatcat attgaatact ttgatcaaca ttacttactt gagcttgggt
     1441 tttttccctt tcctaaatta actagcactg actgtaattt atttccctgt ttcatgtctc
     1501 ccttccattc tgcaggagtt ttagctattt gagattgtgg accatcaatt ttgcacttta
     1561 gagagtgatt ctgactcaaa tcctctgttt tatcagcagt tttggctttt cttgctctta
     1621 gctggaaaaa cgaccatctg ccaactttat acagtattta cttgcttttg acccacagaa
     1681 tatagaacat gcattgtgca aatggttgat tcagcaagac tacaaaaaaa aaaaagacaa
     1741 aaaaaactac tgaggagctt agtaactgct gtttctgtac gtagtactta atctcccaag
     1801 cacatctcgt gtctgtcggt ttctaattgg catgtgtagg ctgctctgtg acggaagaac
     1861 ttttcaaacc agctttacac ccttcaggaa aaatcctttg tgattggatg tttagtgtct
     1921 gcccggaaac tggtatccaa gatgttgaag ctgcggttat tttatgatag cacacttccc
     1981 ttgatctgct tctttttatt ccatcgctat ttacccttat ttttaatttt aaaaaatttt
     2041 atagccatac ctaatgatgc tcttgatttg ttgattacac aaatcaattt cattaaaatc
     2101 caaagattgc aagtctttag gtatattttg taccagatta aattagaaga caaaaaattt
     2161 gtgctttcat agttgctaca aatataaata atggagagat ttggtgcaaa acaacaaaat
     2221 acaaaaaata taaatttatt agctatatac agtgtagcta ataaaattac ctgaggagtg
     2281 taatgcttgt ttattttttt gtgtatatct ttgcaatcta ttttatatat attgacaaaa
     2341 gagactgtga aatacttagc catgcagaat atgtgaccag atcagagcat gtgtaggaag
     2401 acactttggt aatcattaac tctgccctga aatgatggac tacaagttat gatgtgtgtt
     2461 atctgcactt caatcagtag tattagcaaa tctccaaatg ttagccacat tggtttgttt
     2521 cccttgtcca ttctttattc atgatacttc aatgctgtaa actgggtggt cctttttaaa
     2581 caaaacattt gtgaaacaga gggattgttt ttaaagcttt tgtaaataaa ggcttcagaa
     2641 atgttttctt atatatgttg atgactagta attttgtttc agaaatattt gggggctgtt
     2701 gtgggttttt ttttttaatt tgggcaactg aacataactc agtaacttca ttaactagat
     2761 gatttttaat ctcttaattg aaaaaatcaa cctgagcctt ctacatttca acagtgttgg
     2821 cttatttttt aatgcatact tcaactagat gttaagactg gacttctgtc tccccattta
     2881 ttctgaaaga tgtacaaagt aaatgcattt ggtataactt actgtggctt cttttaaagt
     2941 caaacacaaa ttagctatct aattggtttc tttttctttt gatcttttat aaagattgcc
     3001 ttttaaatag ccatgtagtt gctgaatttc agtttgtagt tgctgaattt cagagtttgt
     3061 atcaattttt tggttttggt ttctgtctcc aagaactaat atattttata acttctaaaa
     3121 gaggaacatt ataaccttta ctaaacctag cttttggata aaagatattc gatcattttt
     3181 tcatgttcct aagccattaa ttctggactt aaccatattc tgttaagtct actacagcaa
     3241 gaatcagcaa actatggcct actgatcaaa accagcctgc tgcctgtatt ttgtatggcc
     3301 agtgacatga gaatggattt tacagttttt aaatggttgg ggggaaaaaa agagcatttc
     3361 ctgacatgtg aaaattatga aattcaacat ttagtgtcca caaataaagt tttattggat
     3421 tgca
//
LOCUS       XM_032618528            3421 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CCR4-NOT transcription complex subunit 7
            (CNOT7), transcript variant X4, mRNA.
ACCESSION   XM_032618528
VERSION     XM_032618528.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3421
                     /gene="CNOT7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 25 Proteins,
                     and 96% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:116746802"
     CDS             277..1134
                     /gene="CNOT7"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 7"
                     /protein_id="XP_032474419.1"
                     /db_xref="GeneID:116746802"
                     /translation="MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFP
                     GVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFN
                     LTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGY
                     DFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLEL
                     ERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA
                     YEEEANKQS"
     misc_feature    277..1113
                     /gene="CNOT7"
                     /note="CAF1 family ribonuclease; Region: CAF1; cl23804"
                     /db_xref="CDD:474062"
ORIGIN      
        1 gaagggaggt aggtcaaaag gcggcagctg gcgggagtcg gcctgaggag ctgcgagtgt
       61 agttaggacc agcccgccct cccgccctac tttttcttcc tgtcggagag gcggcgacca
      121 gtcacctgga gtgtgagttc cggagggact cgatcagccg ctgcttctgc tgttggaggc
      181 tggtacataa ataaaggata aagtatttta cgaaacaaat cttcaatcaa gtataacatt
      241 ttgatgcttg gcagctagac tccttgtgcc ctcactatgc cagcagcgac tgtagatcat
      301 agccaaagaa tttgtgaagt ttgggcttgc aacctggatg aagagatgaa gaaaattcgt
      361 caagttatcc gaaaatataa ttacgttgct atggacaccg agtttccagg tgtggttgca
      421 agacccattg gagaattcag gagcaatgct gactatcagt accaactatt gcggtgtaat
      481 gtggacttgt tgaagataat tcagctagga ctgacattta tgaatgagca aggagaatac
      541 cctccaggaa cttcaacttg gcagtttaat tttaaattta atttgacgga ggacatgtat
      601 gcccaagact ctatagagct actaacaaca tctggtatcc agtttaaaaa acatgaggag
      661 gaaggaattg agacccagta ctttgcagaa cttcttatga catcaggagt agtcctctgt
      721 gaaggggtca aatggttatc atttcatagt ggttatgact ttggctactt aatcaaaatc
      781 ctgaccaatt ctaacttgcc tgaagaagaa cttgactttt ttgagatcct tcgattgttt
      841 tttcctgtca tttatgatgt gaagtacctc atgaagagct gcaaaaatct caaaggtggt
      901 ttacaggaag ttgctgaaca gttagagctg gaacggatag gaccacagca tcaggcagga
      961 tctgactcat tgctcacagg aatggccttt ttcaaaatga gagaaatgtt ctttgaagat
     1021 catattgatg atgccaaata ttgtggtcat ttgtatggcc ttggttctgg ttcatcctat
     1081 gtacagaatg gcacagggaa tgcatatgaa gaggaagcca acaagcagtc atgacatgaa
     1141 atagttcttt tatttttatt ttatttgagc tacgcacatg cttgtatata ggttttatct
     1201 ctggttgaat cccttgaaca atagacatta ctgttttttc tctcatagct cattttattt
     1261 tctgcctttc agtactaagt atgaccattc ctatctcaga tcttaataaa tagaaaagca
     1321 ttcaggttaa atctggcctt aatatacttg ttagtaggcg tgtgtgacag agtggggaaa
     1381 gctattcagt acatcatatt gaatactttg atcaacatta cttacttgag cttgggtttt
     1441 ttccctttcc taaattaact agcactgact gtaatttatt tccctgtttc atgtctccct
     1501 tccattctgc aggagtttta gctatttgag attgtggacc atcaattttg cactttagag
     1561 agtgattctg actcaaatcc tctgttttat cagcagtttt ggcttttctt gctcttagct
     1621 ggaaaaacga ccatctgcca actttataca gtatttactt gcttttgacc cacagaatat
     1681 agaacatgca ttgtgcaaat ggttgattca gcaagactac aaaaaaaaaa aagacaaaaa
     1741 aaactactga ggagcttagt aactgctgtt tctgtacgta gtacttaatc tcccaagcac
     1801 atctcgtgtc tgtcggtttc taattggcat gtgtaggctg ctctgtgacg gaagaacttt
     1861 tcaaaccagc tttacaccct tcaggaaaaa tcctttgtga ttggatgttt agtgtctgcc
     1921 cggaaactgg tatccaagat gttgaagctg cggttatttt atgatagcac acttcccttg
     1981 atctgcttct ttttattcca tcgctattta cccttatttt taattttaaa aaattttata
     2041 gccataccta atgatgctct tgatttgttg attacacaaa tcaatttcat taaaatccaa
     2101 agattgcaag tctttaggta tattttgtac cagattaaat tagaagacaa aaaatttgtg
     2161 ctttcatagt tgctacaaat ataaataatg gagagatttg gtgcaaaaca acaaaataca
     2221 aaaaatataa atttattagc tatatacagt gtagctaata aaattacctg aggagtgtaa
     2281 tgcttgttta tttttttgtg tatatctttg caatctattt tatatatatt gacaaaagag
     2341 actgtgaaat acttagccat gcagaatatg tgaccagatc agagcatgtg taggaagaca
     2401 ctttggtaat cattaactct gccctgaaat gatggactac aagttatgat gtgtgttatc
     2461 tgcacttcaa tcagtagtat tagcaaatct ccaaatgtta gccacattgg tttgtttccc
     2521 ttgtccattc tttattcatg atacttcaat gctgtaaact gggtggtcct ttttaaacaa
     2581 aacatttgtg aaacagaggg attgttttta aagcttttgt aaataaaggc ttcagaaatg
     2641 ttttcttata tatgttgatg actagtaatt ttgtttcaga aatatttggg ggctgttgtg
     2701 ggtttttttt tttaatttgg gcaactgaac ataactcagt aacttcatta actagatgat
     2761 ttttaatctc ttaattgaaa aaatcaacct gagccttcta catttcaaca gtgttggctt
     2821 attttttaat gcatacttca actagatgtt aagactggac ttctgtctcc ccatttattc
     2881 tgaaagatgt acaaagtaaa tgcatttggt ataacttact gtggcttctt ttaaagtcaa
     2941 acacaaatta gctatctaat tggtttcttt ttcttttgat cttttataaa gattgccttt
     3001 taaatagcca tgtagttgct gaatttcagt ttgtagttgc tgaatttcag agtttgtatc
     3061 aattttttgg ttttggtttc tgtctccaag aactaatata ttttataact tctaaaagag
     3121 gaacattata acctttacta aacctagctt ttggataaaa gatattcgat cattttttca
     3181 tgttcctaag ccattaattc tggacttaac catattctgt taagtctact acagcaagaa
     3241 tcagcaaact atggcctact gatcaaaacc agcctgctgc ctgtattttg tatggccagt
     3301 gacatgagaa tggattttac agtttttaaa tggttggggg gaaaaaaaga gcatttcctg
     3361 acatgtgaaa attatgaaat tcaacattta gtgtccacaa ataaagtttt attggattgc
     3421 a
//
LOCUS       XM_032618529            2564 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 705A-like
            (LOC116746803), transcript variant X1, mRNA.
ACCESSION   XM_032618529
VERSION     XM_032618529.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2564
                     /gene="LOC116746803"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746803"
     CDS             635..1597
                     /gene="LOC116746803"
                     /codon_start=1
                     /product="zinc finger protein 705A-like"
                     /protein_id="XP_032474420.1"
                     /db_xref="GeneID:116746803"
                     /translation="MQPLESVTFEDVAISFTQEEWALLDTSQRKLFRDVMLENISHLV
                     SVGYQHCKSDMIFQLDQGEELWIEGRGFFQSHSPGRESALKEMLATQHISRKDTSTII
                     PLQVSHTPEDPFECNDLGEDFTHSSTLSQHLLTHTEKTPCINKQCKKSLSDQSYLNQH
                     KQIHTRGKSCECHLCGKAFSNCSSLRRHEMTHTGEKPYECHICGNAFIQSSDLRKHNL
                     THTGEKPYECHLCGKAFSQSSNLRQHERTHTGEQPYECQLCGKAFSKCSALRRHERTH
                     TGEKPYECHLCGKSFSQCSALRRHEGTHNGEKIMNAFSKYSDLR"
     misc_feature    653..835
                     /gene="LOC116746803"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    <947..1513
                     /gene="LOC116746803"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    980..1042
                     /gene="LOC116746803"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275370"
     misc_feature    1067..1126
                     /gene="LOC116746803"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1148..1210
                     /gene="LOC116746803"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1148..1150,1157..1159,1196..1198,1208..1210)
                     /gene="LOC116746803"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1163..1165,1169..1171,1175..1177,1181..1186,
                     1193..1198,1205..1207,1247..1249,1253..1255,1265..1270,
                     1277..1282,1289..1291,1331..1333,1337..1339,1343..1345,
                     1349..1354,1361..1366,1373..1375)
                     /gene="LOC116746803"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1232..1294
                     /gene="LOC116746803"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1316..1378
                     /gene="LOC116746803"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1400..1462
                     /gene="LOC116746803"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1484..1546
                     /gene="LOC116746803"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 agcagctctt ctggcccgaa ggcccgttac ctggcgtatg tttcactatt tctcgttcaa
       61 actctctcgt ggatgccctc agcgccgcgt cctccacacc cggagtcccg ggcccctcga
      121 ccgccaccgt ccccgcccgc ggggagcccc gcctagtcgg ggggagctct gctgccgggg
      181 ccggacctga atctgttccg atctgattga aagtactctc ctccctgttg ggtgactcac
      241 agaggaaaat aagaagaaac agtgcccaga atccagccag cacgccaccc acccacccac
      301 agacatttaa ataaccctct agatcctcag tcccctcaac tcaccctaga aggttccagt
      361 tcctcatcag agtgcatgca tacaacgggc agagagcaaa gctcgagaac caccctggca
      421 ctacttgtct ctgtgatgct gaagacattc tccttcctgt gtgttacaga gaagattcaa
      481 atttccagag tttgtaagct ttggaagatg ctagttgaac attctgcact atggagatgt
      541 gtacctgaca ccttacgagc tctgcctgct tagtgcttgg actgtctgtg agtgaaaacc
      601 cagagaaaga ctgctcgcag ctgagttact gacgatgcag ccattggaat cagtgacatt
      661 tgaagatgta gcaatcagct tcacccagga agagtgggcc ctgctggaca catcccagag
      721 aaagctgttc agagatgtga tgctggagaa catcagtcat ctggtctccg tggggtatca
      781 gcattgcaaa tcagatatga ttttccagct ggaccaaggt gaagagctgt ggattgaagg
      841 aagaggattt ttccaaagcc acagtccagg cagggaaagt gcccttaaag aaatgttagc
      901 cacacagcat atcagcagga aagacacatc tacaatcatc ccactgcaag tgtctcacac
      961 tccagaggat cccttcgaat gtaatgattt gggagaagat ttcactcata gttccacact
     1021 gagtcaacat ttgttaacgc acacagaaaa gacaccctgt atcaacaaac agtgtaaaaa
     1081 atcccttagt gaccaatcat accttaatca acataagcag atccacacta gaggtaaatc
     1141 gtgtgagtgc catctgtgcg ggaaagcctt cagtaattgc tctagcctta gaagacacga
     1201 gatgactcac actggagaga aaccgtatga atgccatatc tgtgggaatg cctttattca
     1261 aagctctgac cttagaaaac acaatctaac tcacaccgga gagaaaccat atgaatgtca
     1321 tctctgtggg aaagccttta gtcagtcctc taacctcaga cagcatgaga gaacacacac
     1381 tggagagcag ccgtatgaat gtcaactctg tgggaaagcg ttcagtaaat gttctgctct
     1441 tagacgacac gagagaactc acactggaga gaaaccgtat gagtgtcatc tttgtggcaa
     1501 atccttcagc cagtgttctg cccttagacg acatgaggga acccacaatg gagagaaaat
     1561 tatgaatgcc ttcagtaagt attctgacct cagatgacat ggtattataa atgtaacaaa
     1621 cgtggacaag acttcaaccg tagctttaac atttaaacac accagaggac tcacgtcgaa
     1681 gaaaacgctg tgatcaatgg ggaagatcct tcggttatcc ttattcaact tgacatactc
     1741 aagtttatat ggaagagagt ccatatgtgt gatatttatg tggcaaaacc ttcagtcagt
     1801 ggtctgacca tagatgacat gagagaactc atactgtcaa tagtaacagc agctctaaac
     1861 tttaaacaca ctaggggact tgcatcaggg agaatccagg tctgccatca atgtgaaaat
     1921 gctttcattt ataattcatg gttaaacaac atgggcaaac tccatttggg agagccccta
     1981 ggtctaatca ctgtgaacaa acattcaacc aagcagtctt gatgtgcacg agaaaactca
     2041 gtgaaggaat gaataaccac tacaacagga agtaagagga tgcaggctct taaggaatac
     2101 caagtcattc atccaggaga agtgattcag tgcaaaatca cgagaaatcc tttattcata
     2161 gagccacact tgtggtacct gtgtggatcc agactgtaca aaacatgctc agtgtcatga
     2221 ataaggatga cacttccgtg atctctcatt tcataatcaa cgttaaggtt ctcacactga
     2281 ggagacagca gtcctaaaat cagtgtggcg aaaacttcat ctagacttca cattcagaaa
     2341 agctaagttg agggggtgaa aaacccttta aaagagcctt taacatacaa ttcagcaaat
     2401 aattcagaac tttgagagaa ctatttatgg ggaaaaacct gacataaatg caaacagtaa
     2461 ggtgatctgg gaatactgaa tgcagaattt tgtaagaaat taaacttttt ccaatagatt
     2521 atttgtaaat atttaaacaa taaagttggt tgctgaaaag tcta
//
LOCUS       XR_004347877            2008 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 705A-like
            (LOC116746803), transcript variant X2, misc_RNA.
ACCESSION   XR_004347877
VERSION     XR_004347877.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2008
                     /gene="LOC116746803"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746803"
     misc_RNA        1..2008
                     /gene="LOC116746803"
                     /product="zinc finger protein 705A-like, transcript
                     variant X2"
                     /db_xref="GeneID:116746803"
ORIGIN      
        1 gacctcgcaa tttccggccg agccggaagc agctcttctg gcccgaaggc ccgttacctg
       61 gcgtatgttt cactatttct cgttcaaact ctctcgtgga tgccctcagc gccgcgtcct
      121 ccacacccgg agtcccgggc ccctcgaccg ccaccgtccc cgcccgcggg gagccccgcc
      181 tagtcggggg gagctctgct gccggggccg gacctgaatc tgttccgatc tgattgaaag
      241 tactctcctc cctgttgggt gactcacaga ggaaaataag aagaaacagt gcccagaatc
      301 cagccagcac gccacccacc cacccacaga catttaaata accctctaga tcctcagtcc
      361 cctcaactca ccctagaagg ttccagttcc tcatcagagt gcatgcatac aacgggcaga
      421 gagcaaagct cgagaaccac cctggcacta cttgtctctg tgatgctgaa gacattctcc
      481 ttcctgtgtg ttacagagaa gattcaaatt tccagagttt gtaagctttg gaagatgcta
      541 gttgaacatt ctgcactatg gagatgtgta cctgacacct tacgaggttg aacgcagttg
      601 atttttgtcc tttgatcatc ggaatgcttg ggaatgcagg gagaggcccc ggttgtcaag
      661 catctcttcc agagacatgt gagagcaggg ttccagtcac tgagtgtggg gctctccatg
      721 atctgaagca taaagccttc tgaaatcatt ccagctttaa ttaaggaagc tgggaagagg
      781 tgccctcacc aaactgaagt ctagttgcat gttctatact tgaggaaatt cccgatcacc
      841 aaacttgccc aatcctcgca agtgtggaac tatacaactg tgaaatttca gggtcacgga
      901 tcttcaagga aagtgacttc tctccactgc ttttctaaca caaccttgtc ctggaccctc
      961 ttcttacctt ccaaggcagg cagatgatga acctgcccaa gctgcaggct ctgtgtgtcc
     1021 tggagttggt ggacattccc ctcgtgcctg actaggggct cgtgatggct ctctctgaag
     1081 ttgattgact ccacagccta aaactggtga actccttctc gtcaggtgga ttcctgcagg
     1141 cagtagccca gcatcttcag gagctcagta tgagagtggg ctcaacaacc aaagtattgt
     1201 ctcaactaga aaggatggat tccctgctat aactggaact aaaatattcc tcccagcact
     1261 gaagacttcc tctctgcttc taacatcctc tctgttggcc tcagaatgcc agattccaag
     1321 tcctgcagct cctggaagtc cacacctcag gccaggggag ggaggatgcc ggggctcttc
     1381 tgcaggaggc gctgctacgc tgtgcggtca cttttaattc caggccacac tcgcccgcca
     1441 ggtggtggaa gcgacgcccc cgtgtaactc aggcctatcc tcaccgccct cacctgcaca
     1501 ccgaaccatg cgaggacata actcacatta aactgtggtc agggaacaga cttttgagcc
     1561 agatacacgt gagcgtgaaa cgtagttcaa ccaattatat gctgcgtagt tttcgttaag
     1621 tcacatgaat cctttccagg tcggtttcat gacaggaaaa atgacaataa taatggcaaa
     1681 tgagggaatt ccctggcggt ccagtggtta ggactctgca ctgtcactgc caagggccca
     1741 agtttggtcc ctggttgggg aactgagatc ccacaagccg cacgtgccgt ggccagaaga
     1801 aaagaaaaaa taataatggc aaatgaataa atggcaagat tataagaata ctcctgttac
     1861 ctaatatgtg atcaatattg atgacatgtt tgggtagagg gcttcttaga tcttccataa
     1921 gagttatcca tagactttgt tgtctgtact ttcttctcag tttgcttgga acctaaaaca
     1981 actctaaaaa aataaagcat ttttagaa
//
LOCUS       XR_004347878            2086 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 705A-like
            (LOC116746803), transcript variant X3, misc_RNA.
ACCESSION   XR_004347878
VERSION     XR_004347878.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2086
                     /gene="LOC116746803"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746803"
     misc_RNA        1..2086
                     /gene="LOC116746803"
                     /product="zinc finger protein 705A-like, transcript
                     variant X3"
                     /db_xref="GeneID:116746803"
ORIGIN      
        1 gagccggaag cagctcttct ggcccgaagg cccgttacct ggcgtatgtt tcactatttc
       61 tcgttcaaac tctctcgtgg atgccctcag cgccgcgtcc tccacacccg gagtcccggg
      121 cccctcgacc gccaccgtcc ccgcccgcgg ggagccccgc ctagtcgggg ggagctctgc
      181 tgccggggcc ggacctgaat ctgttccggt aaaatcgctg cgcggctggt cctcgcccga
      241 cctttctgcc ccggttcttt tcaccgtctc cgctccccac cccgcgcctt gtcaggtccc
      301 tctcgatctg attgaaagta ctctcctccc tgttgggtga ctcacagagg aaaataagaa
      361 gaaacagtgc ccagaatcca gccagcacgc cacccaccca cccacagaca tttaaataac
      421 cctctagatc ctcagtcccc tcaactcacc ctagaaggtt ccagttcctc atcagagtgc
      481 atgcatacaa cgggcagaga gcaaagctcg agaaccaccc tggcactact tgtctctgtg
      541 atgctgaaga cattctcctt cctgtgtgtt acagagaaga ttcaaatttc cagagtttgt
      601 aagctttgga agatgctagt tgaacattct gcactatgga gatgtgtacc tgacacctta
      661 cgaggttgaa cgcagttgat ttttgtcctt tgatcatcgg aatgcttggg aatgcaggga
      721 gaggccccgg ttgtcaagca tctcttccag agacatgtga gagcagggtt ccagtcactg
      781 agtgtggggc tctccatgat ctgaagcata aagccttctg aaatcattcc agctttaatt
      841 aaggaagctg ggaagaggtg ccctcaccaa actgaagtct agttgcatgt tctatacttg
      901 aggaaattcc cgatcaccaa acttgcccaa tcctcgcaag tgtggaacta tacaactgtg
      961 aaatttcagg gtcacggatc ttcaaggaaa gtgacttctc tccactgctt ttctaacaca
     1021 accttgtcct ggaccctctt cttaccttcc aaggcaggca gatgatgaac ctgcccaagc
     1081 tgcaggctct gtgtgtcctg gagttggtgg acattcccct cgtgcctgac taggggctcg
     1141 tgatggctct ctctgaagtt gattgactcc acagcctaaa actggtgaac tccttctcgt
     1201 caggtggatt cctgcaggca gtagcccagc atcttcagga gctcagtatg agagtgggct
     1261 caacaaccaa agtattgtct caactagaaa ggatggattc cctgctataa ctggaactaa
     1321 aatattcctc ccagcactga agacttcctc tctgcttcta acatcctctc tgttggcctc
     1381 agaatgccag attccaagtc ctgcagctcc tggaagtcca cacctcaggc caggggaggg
     1441 aggatgccgg ggctcttctg caggaggcgc tgctacgctg tgcggtcact tttaattcca
     1501 ggccacactc gcccgccagg tggtggaagc gacgcccccg tgtaactcag gcctatcctc
     1561 accgccctca cctgcacacc gaaccatgcg aggacataac tcacattaaa ctgtggtcag
     1621 ggaacagact tttgagccag atacacgtga gcgtgaaacg tagttcaacc aattatatgc
     1681 tgcgtagttt tcgttaagtc acatgaatcc tttccaggtc ggtttcatga caggaaaaat
     1741 gacaataata atggcaaatg agggaattcc ctggcggtcc agtggttagg actctgcact
     1801 gtcactgcca agggcccaag tttggtccct ggttggggaa ctgagatccc acaagccgca
     1861 cgtgccgtgg ccagaagaaa agaaaaaata ataatggcaa atgaataaat ggcaagatta
     1921 taagaatact cctgttacct aatatgtgat caatattgat gacatgtttg ggtagagggc
     1981 ttcttagatc ttccataaga gttatccata gactttgttg tctgtacttt cttctcagtt
     2041 tgcttggaac ctaaaacaac tctaaaaaaa taaagcattt ttagaa
//
LOCUS       XR_004347879            4064 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 705A-like
            (LOC116746803), transcript variant X4, misc_RNA.
ACCESSION   XR_004347879
VERSION     XR_004347879.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4064
                     /gene="LOC116746803"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 93% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746803"
     misc_RNA        1..4064
                     /gene="LOC116746803"
                     /product="zinc finger protein 705A-like, transcript
                     variant X4"
                     /db_xref="GeneID:116746803"
ORIGIN      
        1 gacctcgcaa tttccggccg agccggaagc agctcttctg gcccgaaggc ccgttacctg
       61 gcgtatgttt cactatttct cgttcaaact ctctcgtgga tgccctcagc gccgcgtcct
      121 ccacacccgg agtcccgggc ccctcgaccg ccaccgtccc cgcccgcggg gagccccgcc
      181 tagtcggggg gagctctgct gccggggccg gacctgaatc tgttccggta aaatcgctgc
      241 gcggctggtc ctcgcccgac ctttctgccc cggttctttt caccgtctcc gctccccacc
      301 ccgcgccttg tcaggtccct ctcggtgtgt attctccggc cttcgagagc ggcgtcgggc
      361 cgtcccgcct cctcccgacc ctgcgtcctg cagccccctg tcctctcccg aatctgcgtc
      421 cccatcctgg ctccattctg gggcccagcc ctgccgctct ccaggcgttc ccgtcacagt
      481 cacctcttca gagaggcccc tgagcccagc gctgggggcg ttcacccgtc cccgccccgt
      541 gacaccccgc ggcctcgaat cccatcccac ccggccgtgc ctgcagcgtg tgtttacatt
      601 cccggggccg ccctggaaag cgtgctcttg ctgtgcaggg gctgctgcat tcaattcctg
      661 cgactgcaga ggtgcggcag gaggatgacg agaaaggagc gagatcaagg gagaaccagg
      721 gagacagagt gagatagtaa aagcaggggt gaattgaggt tgggggagtg ggtcccatgg
      781 gcttgaaaag acccgctaag agtgaaggag aatgacctgg gcagcagggg aataaatgaa
      841 aatagaccaa aagaggatca gcagagatgg aagagggcag agacggggag ggagttacga
      901 gcaccagtag cggcgggggc aagagaaagg tagatcccgg attcattagt tgtgttttta
      961 aatttccagc ttacagtccc gtttacaggt attgtgtcag attccgatga tgaggtctca
     1021 gtggttttcc agtcttcatc acatgttgaa aatattcttc agtgcttagc aagtaatttt
     1081 acactatttc agtgtgttct tactaaggat atcggtaatt ttctatgtca acagtcaaaa
     1141 cctagattaa ccacttagtc tgatattcaa catctttatc cccttttatg agcttttaac
     1201 ttagtgggct gtgaactgaa gtttccagcc aagtatatat tccctttgtc gtgtctctga
     1261 aagtgatcaa gggtgagctg gattgtcctc agaagtagtt ggaagagagc ccttctgttc
     1321 ctggtgaata aatcgctgag ctgtttccat tgctgacctc ctttcatgtt ttccagtgct
     1381 accaattagg tcttcttaag atcatacatt tctttttata ttttattttt ggctgcgttg
     1441 ggtcttcatt gctgcacgtg ggctttctct agttgcggca agcgggggct gctcttcgtt
     1501 gccatgcgca ggcttctcat tgcggtggtt tctcgttgca gagcacgggc tctaggcaca
     1561 cgggcttcag tagttgtggc acacaggctc agtagttgcg gcacatgggc cctagagtgt
     1621 gcgggcttca gtagttgtgg ctcgccggct ctcgagcgca ggctcagtag ctgtggctca
     1681 cgggcttagt tgctccgtgg catgtgggat ctccccggac cagggcttga acccatgtcc
     1741 cctgcattgg caggcagatt ctcaaccgct gcgccaccag ggaagccccg tgtcattttt
     1801 tgatggtttt aatatgatgt tcttctggaa aagaggagtc aaatacttga gattattgtg
     1861 attaaaatca tgaaaggaag tggctcttgc tgagggatag gaaatgtgat ttttaggggc
     1921 aggcaggggt gagagggcaa accctgcact gtctcatcca ggccgtgtca ttcccatgag
     1981 gacagacctg gttcctctcc gccagccttt cctgctgacc cccttgcctg ctccaaccca
     2041 gcagggggtc acgaggccac tcgacaaggg agggcccgga cttcacaaac taagcgaaga
     2101 tcaaaagtct ctctccagtg aggcgggaga agagggcact tgattctgaa gggagccgga
     2161 agaaagagca agaatgctgt cgagggccaa ggagccgggg atgggaggga gactgagaag
     2221 ctcggaacaa gaggaagggc cacgtcttcc cgtcctcacc cgaggtgacc ctgtgctcag
     2281 cagatctgat tgaaagtact ctcctccctg ttgggtgact cacagaggaa aataagaaga
     2341 aacagtgccc agaatccagc cagcacgcca cccacccacc cacagacatt taaataaccc
     2401 tctagatcct cagtcccctc aactcaccct agaaggttcc agttcctcat cagagtgcat
     2461 gcatacaacg ggcagagagc aaagctcgag aaccaccctg gcactacttg tctctgtgat
     2521 gctgaagaca ttctccttcc tgtgtgttac agagaagatt caaatttcca gagtttgtaa
     2581 gctttggaag atgctagttg aacattctgc actatggaga tgtgtacctg acaccttacg
     2641 aggttgaacg cagttgattt ttgtcctttg atcatcggaa tgcttgggaa tgcagggaga
     2701 ggccccggtt gtcaagcatc tcttccagag acatgtgaga gcagggttcc agtcactgag
     2761 tgtggggctc tccatgatct gaagcataaa gccttctgaa atcattccag ctttaattaa
     2821 ggaagctggg aagaggtgcc ctcaccaaac tgaagtctag ttgcatgttc tatacttgag
     2881 gaaattcccg atcaccaaac ttgcccaatc ctcgcaagtg tggaactata caactgtgaa
     2941 atttcagggt cacggatctt caaggaaagt gacttctctc cactgctttt ctaacacaac
     3001 cttgtcctgg accctcttct taccttccaa ggcaggcaga tgatgaacct gcccaagctg
     3061 caggctctgt gtgtcctgga gttggtggac attcccctcg tgcctgacta ggggctcgtg
     3121 atggctctct ctgaagttga ttgactccac agcctaaaac tggtgaactc cttctcgtca
     3181 ggtggattcc tgcaggcagt agcccagcat cttcaggagc tcagtatgag agtgggctca
     3241 acaaccaaag tattgtctca actagaaagg atggattccc tgctataact ggaactaaaa
     3301 tattcctccc agcactgaag acttcctctc tgcttctaac atcctctctg ttggcctcag
     3361 aatgccagat tccaagtcct gcagctcctg gaagtccaca cctcaggcca ggggagggag
     3421 gatgccgggg ctcttctgca ggaggcgctg ctacgctgtg cggtcacttt taattccagg
     3481 ccacactcgc ccgccaggtg gtggaagcga cgcccccgtg taactcaggc ctatcctcac
     3541 cgccctcacc tgcacaccga accatgcgag gacataactc acattaaact gtggtcaggg
     3601 aacagacttt tgagccagat acacgtgagc gtgaaacgta gttcaaccaa ttatatgctg
     3661 cgtagttttc gttaagtcac atgaatcctt tccaggtcgg tttcatgaca ggaaaaatga
     3721 caataataat ggcaaatgag ggaattccct ggcggtccag tggttaggac tctgcactgt
     3781 cactgccaag ggcccaagtt tggtccctgg ttggggaact gagatcccac aagccgcacg
     3841 tgccgtggcc agaagaaaag aaaaaataat aatggcaaat gaataaatgg caagattata
     3901 agaatactcc tgttacctaa tatgtgatca atattgatga catgtttggg tagagggctt
     3961 cttagatctt ccataagagt tatccataga ctttgttgtc tgtactttct tctcagtttg
     4021 cttggaacct aaaacaactc taaaaaaata aagcattttt agaa
//
LOCUS       XM_032618530            1832 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fibroblast growth factor 20 (FGF20),
            mRNA.
ACCESSION   XM_032618530
VERSION     XM_032618530.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1832
                     /gene="FGF20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 15 Proteins"
                     /db_xref="GeneID:116746806"
     CDS             310..945
                     /gene="FGF20"
                     /codon_start=1
                     /product="fibroblast growth factor 20"
                     /protein_id="XP_032474421.1"
                     /db_xref="GeneID:116746806"
                     /translation="MAPLAEVGGFLGGLEGLGQQVGSHFLLPPAGERPPLLGERRGAA
                     ELGARGGPGAAELAHLHGILRRRQLYCRTGFHLQILPDGSVQGTRQDHSLFGILEFIS
                     VAVGLVSIRGVDSGLYLGMNDKGELYGSEKLTSECIFREQFEENWYNTYSSNIYKHGD
                     TGRRYFVALNKDGTPRDGARSKRHQKFTHFLPRPVDPERVPELYKDLLMYS"
     misc_feature    475..933
                     /gene="FGF20"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 20 (FGF20) and similar proteins; Region:
                     beta-trefoil_FGF20; cd23327"
                     /db_xref="CDD:467013"
     misc_feature    order(478..480,490..492,496..504,508..510,517..519,
                     535..537,580..582,748..750,883..903,928..933)
                     /gene="FGF20"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467013"
ORIGIN      
        1 tctgatccgt ttgcggagtt ggagccccag gcccagcccc agtattggca gcggcagcta
       61 tagatgtttc tgcaaagcca gcaaccggct cccacctacc ccaggagaga agatcgctcc
      121 aagacagtga aagcctccct gctctcagtg caaagttcat ccagcgacct cacgggacta
      181 accgggcctt agcttgtttg cgcttgtttg gctataattt ttctccattc acctccccat
      241 ccctgctcca ttttttttat tgggggtctt ttgttttccg gatccgccgc ctctccctcc
      301 ggccgcccca tggctccctt agccgaggtc gggggcttcc tgggcggcct ggagggcttg
      361 ggccagcagg tgggctcgca cttcctgctg cctcctgccg gggagcggcc gcctctgctg
      421 ggcgagcgcc ggggcgcggc ggagctgggc gcccgcggcg gtcccggggc tgcggagctg
      481 gcgcacctgc acggcatcct gcgccgcagg cagctctact gccgcaccgg cttccacctg
      541 cagatcctgc ccgacggcag cgtgcagggc accaggcagg accacagcct cttcggtatc
      601 ctggaattca tcagtgtggc agtgggactg gtcagtatta gaggtgtgga cagtggtctt
      661 taccttggaa tgaatgacaa aggagaactc tatggatcag agaaactgac ttctgaatgc
      721 atctttaggg agcaatttga agagaactgg tataatacct attcatccaa catatataaa
      781 catggagaca ctggccgtag gtattttgtg gcacttaaca aagatggaac tccaagagat
      841 ggtgccagat ctaaaagaca tcagaaattt acacatttcc tgcctagacc agtggatcca
      901 gaaagagttc ctgaactgta caaggatcta ctaatgtaca gttgaagggt gatagtgtct
      961 ttactgaaga accaaactac aactattctt tcttattaca gtttgcatca taaaataata
     1021 acacaggaag accttcagaa tgttatggag tctattttcc actgggagac tgaatttgga
     1081 aagaatactg agaacaaaca aacaaaaaat atcttgactt gaagtagatc aagatgtctc
     1141 tttacaagtg gactaagttc cctcgggtac actggctctg tcctcacttg tagattgaag
     1201 ctgaaaatct gttaaactgt gggtaatggg aaccccacct agtttgctgc tggtgcctcg
     1261 cctctctgga gtttgtttac tttaaaagtt acattaaaaa tagatacttc atgttgaaga
     1321 gatgtattga catagttggc caagatcatt gctacataaa ttttgagaac cttgtaggat
     1381 tttgcaggtt atggcatttt atgtaaaaaa tttgggtgaa acgtggactg tgaaacatgc
     1441 cacaccaaga cggaacattt tttttaaaaa ggatggacct atttatacat tttcagcctg
     1501 caaatattta ttatatatat ttatttatta aagagtttat tttttactag tatatgaaga
     1561 taatacaata gaaaaaaaca acaaaaattt ctttatcgtg ccattacttt gttgtgatgt
     1621 cttgggctgt aaagaagaca tcattattgc tacacattaa acatagaata agatcttgaa
     1681 tttcttttta aaaataaagt atagcataga ttatattttt ttgcagtcaa ttgccttcta
     1741 aatgtaacat tggtctcttt ggcctagaaa aatgctgtat caatttgtat tgaattcaac
     1801 acacattcaa aaagggaatt aaacatttta at
//
LOCUS       XM_032618531            3512 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 1-acylglycerol-3-phosphate
            O-acyltransferase 5 (AGPAT5), transcript variant X1, mRNA.
ACCESSION   XM_032618531
VERSION     XM_032618531.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3512
                     /gene="AGPAT5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 14 long SRA reads, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746807"
     CDS             103..1200
                     /gene="AGPAT5"
                     /codon_start=1
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     epsilon isoform X1"
                     /protein_id="XP_032474422.1"
                     /db_xref="GeneID:116746807"
                     /translation="MLLSLVLHMYSMCCVLPAAVLLGTAPTYVLAWGAWRLLSAFLPS
                     RFYQAVDDRLYCIYQSMVLFFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVA
                     DILAIRQNALGHVRYVLKDGLKWLPLYGCYFSQHGGIYVKRSAKFNEKEMRKKLQSYI
                     NAGTPMYLVIFPEGTRYNPELTKVISASQTFAAQEGLPVLKHVLTPRIKATHVAFDSM
                     KNYLDAIYDVTVAFEGTVDDKGQRKEAPSMAEFLCKECPKIHIHIDRIDKKDVPEEQV
                     YMKRWLHERFEIKDKLLIEFYDSLDPERRNKFPGESVNSKLSLKKTFPSFLILSGLTA
                     GMLMTEAGRKLYVKTWIYGTLIGCLWVSIKA"
     misc_feature    289..894
                     /gene="AGPAT5"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LCLAT1-like; Region:
                     LPLAT_LCLAT1-like; cd07990"
                     /db_xref="CDD:153252"
     misc_feature    order(379..381,388..390,394..396,457..468,622..630)
                     /gene="AGPAT5"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153252"
     misc_feature    877..1029
                     /gene="AGPAT5"
                     /note="Acyltransferase C-terminus; Region: Acyltransf_C;
                     pfam16076"
                     /db_xref="CDD:465006"
ORIGIN      
        1 ggcccagccc ggtgattggc cgccgactga gggccgccgg gcggccggcg gcggcggggc
       61 ggggaagagc cggcggagcc ttcctcgtgc ggagccggga agatgctgct gtccctggtg
      121 ctccacatgt actcgatgtg ctgcgtgctg ccggccgccg tgctcctggg cacggctccc
      181 acctacgtgc tggcctgggg ggcctggcgg ctgctctccg ccttcctgcc ctcgcgcttc
      241 taccaggcgg tggacgaccg gctctactgc atctatcaga gcatggtgct tttcttcttc
      301 gagaactaca ccggcgtgca gatattgctg tatggagatt tgccaaaaaa caaagaaaat
      361 ataatatatt tggcaaatca tcaaagcaca gttgactgga tcgttgctga tattttggcc
      421 atcaggcaga acgctctcgg acatgtgcgc tatgtgctga aagatgggct caaatggctt
      481 ccactgtatg ggtgttattt ttctcagcat ggagggatct atgtaaagag aagtgccaaa
      541 ttcaatgaaa aggaaatgag aaaaaagctg cagagctaca tcaatgcagg aactccaatg
      601 tatcttgtga tttttccaga gggaacaagg tataatccag aactaacaaa ggtcatttca
      661 gctagtcaga catttgctgc tcaagaaggc cttccagtat taaaacatgt gctgacacca
      721 agaataaagg caactcatgt tgcttttgat tctatgaaga attacttaga tgcaatttat
      781 gatgttacag tggcctttga ggggactgtg gatgataaag ggcagcggaa ggaagcgccg
      841 tccatggctg aatttctctg caaagaatgt ccaaaaattc atattcacat cgatcgtata
      901 gacaaaaaag atgtcccgga agaacaagta tacatgaaaa gatggcttca tgaacgtttt
      961 gaaataaaag ataaattgct tatagaattc tatgattcac tggatccgga aagaagaaac
     1021 aaatttcccg gagaaagtgt taattctaaa ctaagtctca agaagacctt cccgtcattc
     1081 ttgatcttaa gtggtttgac tgctggtatg cttatgaccg aggctggaag gaaactatat
     1141 gtaaaaacgt ggatttatgg aaccttaatt ggctgcttgt gggttagtat taaagcgtaa
     1201 acgcgtagct gtctccaggc agtgggatgt gctacgttgt ttattactgg cggctgcaca
     1261 ttgcatccga ttgttcctga atttaataag aagtgtaaat aaagccttgt tgattgaaca
     1321 ttggatgaaa tagaatttct gactaaagcc gatatgcagt tggtcttggg caaacataca
     1381 tggttttaca actttagtcc agaagctgct ggaaagggaa aagataaaca gagtttatgt
     1441 tatagttggc atttcctatg aactaatgtc aactccagaa gactgttagg attatatatt
     1501 ttgttactgt tttgtaattc cgatagctgc attcgtgaac atcaattggc agtatatttc
     1561 actgtatttg ttttcttcag ttttttacaa cttgactggt ccaaactctt atcactgaaa
     1621 tatgtagtgt cttgcaactg tgtaatattc tgccttgtgt ttaatttctc caagtcgatg
     1681 aaagaaattg tagttaagta tggagaagga cacgaggaga ggctgaggaa tgctggtgag
     1741 gggcgctctg gttagcgagg acttgtattg tattgtgttg ttagctgagt tcactttatg
     1801 ttggcaaagt gattagcatc tctggtattt actgaaacag cttcatttgc acaccctgta
     1861 ctctatacaa aagaataatg tataaaaata caagaattaa gtttaagtta aaattgtgat
     1921 cctgattcat ggtagcagaa ctttaaattg ctcagctttt tgaagattta agctaagctc
     1981 ctagcacttc atgacatttg tgccataagt acttgaaaac cttacgattt cctgttattt
     2041 tttatatcga aataatcagt gtgaaccttt gttggacctg agtccataga tatttgagat
     2101 ggtgggagct ctcaaacacc tgactaggtt tattagcatg tgccttttgc ctgttactct
     2161 tgggtttagc aaactatgta atccccaaat cattctgttt atgtcgtcgt ggtcggtttc
     2221 cactgtattc gagttctttt cctttggatc gccggcaggg gtgctgctcg gggctggcac
     2281 aggggctcac gggaaagcgc tgtgtcgcca gccagcgtcg gtcctgatgc ggagttgagc
     2341 cttgtaagct cttgtgagca gcccaccatc cacagcaaag gcattttgcg ttcgtcttat
     2401 gtcaagaaat caccttcctc aagccagtga agtacagact taatccatca ggacggagtg
     2461 aatttgtttc attcccattg gtattaatta atggggccac acaattcatc tgtatcacct
     2521 gaaaagaaga gctttgtttc aggaaccaaa tcacacaatt ttcagtcatg gaacaataaa
     2581 tcccctagaa gaggaccttt tttaaagtgt aatctgctct atttttaatg ttacaattca
     2641 agcttgattg cctgctggtc atttaagata ccaattctgc ttccgagtaa tggattttta
     2701 tcaccattta aatcatgata aacaaaatgg aaacacaaat taagggaaat ttggtctgat
     2761 tttccagaac cagagtaagc catttcaagt aacccctctg aagagttggg tggtgtgaat
     2821 tggtttgtgt atgttagtat gtgtgtatgt attgatacac acgttcccac aggacacagt
     2881 tggcttcatt atgaatgggg gtgcaggtaa aacttgttct catgccaaac tgcaattttc
     2941 tcttaccctg taaagtgcag tttagatcaa tcccatgtct tcgttaaata ctctttttaa
     3001 cagtcctaaa cttagaaact atttctaatt ggatcacaag aaatgtaagt tgtgtaactt
     3061 actttgaatg tcatggatat gttctcaatt taaattttaa ggagcaatac cattggaatc
     3121 atgctgatga taactgattt aaagaaggcc aggtgacctg cataagatca cttgaacagc
     3181 atgtttcctg taactatcct tatattctcg caaaaggtct ataaaatatt tgtttaaaat
     3241 ttttttgtat caaaatattt ggaaaattag aagcttcttt ttaacatgta ttgatatgac
     3301 ttgaattatt ttatgaaatt aagagccctg tatacctgta aatcttttca cataatatca
     3361 tttaagcttt tgtttgtgct actgttgatt tacagcttag ttggtacttg gtttatcttt
     3421 aaaagaatgc aatcaatgtg catgctttta tgtttttcgc agaagggtgt gttgggatga
     3481 aagtaaaaga aaaaataaaa tctttcactg tc
//
LOCUS       XM_032618532            3682 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 1-acylglycerol-3-phosphate
            O-acyltransferase 5 (AGPAT5), transcript variant X2, mRNA.
ACCESSION   XM_032618532
VERSION     XM_032618532.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3682
                     /gene="AGPAT5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746807"
     CDS             363..1370
                     /gene="AGPAT5"
                     /codon_start=1
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     epsilon isoform X2"
                     /protein_id="XP_032474423.1"
                     /db_xref="GeneID:116746807"
                     /translation="MLLSLVLHMYSMCCVLPAAVLLGTAPTYVLAWGAWRLLSAFLPS
                     RFYQAVDDRLYCIYQSMVLFFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVA
                     DILAIRQNALGHVRYVLKDGLKWLPLYGCYFSQMYLVIFPEGTRYNPELTKVISASQT
                     FAAQEGLPVLKHVLTPRIKATHVAFDSMKNYLDAIYDVTVAFEGTVDDKGQRKEAPSM
                     AEFLCKECPKIHIHIDRIDKKDVPEEQVYMKRWLHERFEIKDKLLIEFYDSLDPERRN
                     KFPGESVNSKLSLKKTFPSFLILSGLTAGMLMTEAGRKLYVKTWIYGTLIGCLWVSIK
                     A"
     misc_feature    549..1064
                     /gene="AGPAT5"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LCLAT1-like; Region:
                     LPLAT_LCLAT1-like; cd07990"
                     /db_xref="CDD:153252"
     misc_feature    order(639..641,648..650,654..656,717..728,792..800)
                     /gene="AGPAT5"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153252"
     misc_feature    1047..1199
                     /gene="AGPAT5"
                     /note="Acyltransferase C-terminus; Region: Acyltransf_C;
                     pfam16076"
                     /db_xref="CDD:465006"
ORIGIN      
        1 cccgcccccg gtaggggcat agggtgacgg gcgagggtca tggggtgtga gtgatcctga
       61 gctctcgacc ccccaagggc cgcggcttcc ccttgccccg tggccgggag cagcgcgccg
      121 ggcccttcat tcgccagccc gcccaccgtc cagcggcggc gcggcccatg cggctggggg
      181 cggaggccgg atccggcgcg ggctgggcgt ctcaggggcg gccggcggcc cggcgaggtg
      241 agggggcggc ggcggggccc ggcccagccc ggtgattggc cgccgactga gggccgccgg
      301 gcggccggcg gcggcggggc ggggaagagc cggcggagcc ttcctcgtgc ggagccggga
      361 agatgctgct gtccctggtg ctccacatgt actcgatgtg ctgcgtgctg ccggccgccg
      421 tgctcctggg cacggctccc acctacgtgc tggcctgggg ggcctggcgg ctgctctccg
      481 ccttcctgcc ctcgcgcttc taccaggcgg tggacgaccg gctctactgc atctatcaga
      541 gcatggtgct tttcttcttc gagaactaca ccggcgtgca gatattgctg tatggagatt
      601 tgccaaaaaa caaagaaaat ataatatatt tggcaaatca tcaaagcaca gttgactgga
      661 tcgttgctga tattttggcc atcaggcaga acgctctcgg acatgtgcgc tatgtgctga
      721 aagatgggct caaatggctt ccactgtatg ggtgttattt ttctcagatg tatcttgtga
      781 tttttccaga gggaacaagg tataatccag aactaacaaa ggtcatttca gctagtcaga
      841 catttgctgc tcaagaaggc cttccagtat taaaacatgt gctgacacca agaataaagg
      901 caactcatgt tgcttttgat tctatgaaga attacttaga tgcaatttat gatgttacag
      961 tggcctttga ggggactgtg gatgataaag ggcagcggaa ggaagcgccg tccatggctg
     1021 aatttctctg caaagaatgt ccaaaaattc atattcacat cgatcgtata gacaaaaaag
     1081 atgtcccgga agaacaagta tacatgaaaa gatggcttca tgaacgtttt gaaataaaag
     1141 ataaattgct tatagaattc tatgattcac tggatccgga aagaagaaac aaatttcccg
     1201 gagaaagtgt taattctaaa ctaagtctca agaagacctt cccgtcattc ttgatcttaa
     1261 gtggtttgac tgctggtatg cttatgaccg aggctggaag gaaactatat gtaaaaacgt
     1321 ggatttatgg aaccttaatt ggctgcttgt gggttagtat taaagcgtaa acgcgtagct
     1381 gtctccaggc agtgggatgt gctacgttgt ttattactgg cggctgcaca ttgcatccga
     1441 ttgttcctga atttaataag aagtgtaaat aaagccttgt tgattgaaca ttggatgaaa
     1501 tagaatttct gactaaagcc gatatgcagt tggtcttggg caaacataca tggttttaca
     1561 actttagtcc agaagctgct ggaaagggaa aagataaaca gagtttatgt tatagttggc
     1621 atttcctatg aactaatgtc aactccagaa gactgttagg attatatatt ttgttactgt
     1681 tttgtaattc cgatagctgc attcgtgaac atcaattggc agtatatttc actgtatttg
     1741 ttttcttcag ttttttacaa cttgactggt ccaaactctt atcactgaaa tatgtagtgt
     1801 cttgcaactg tgtaatattc tgccttgtgt ttaatttctc caagtcgatg aaagaaattg
     1861 tagttaagta tggagaagga cacgaggaga ggctgaggaa tgctggtgag gggcgctctg
     1921 gttagcgagg acttgtattg tattgtgttg ttagctgagt tcactttatg ttggcaaagt
     1981 gattagcatc tctggtattt actgaaacag cttcatttgc acaccctgta ctctatacaa
     2041 aagaataatg tataaaaata caagaattaa gtttaagtta aaattgtgat cctgattcat
     2101 ggtagcagaa ctttaaattg ctcagctttt tgaagattta agctaagctc ctagcacttc
     2161 atgacatttg tgccataagt acttgaaaac cttacgattt cctgttattt tttatatcga
     2221 aataatcagt gtgaaccttt gttggacctg agtccataga tatttgagat ggtgggagct
     2281 ctcaaacacc tgactaggtt tattagcatg tgccttttgc ctgttactct tgggtttagc
     2341 aaactatgta atccccaaat cattctgttt atgtcgtcgt ggtcggtttc cactgtattc
     2401 gagttctttt cctttggatc gccggcaggg gtgctgctcg gggctggcac aggggctcac
     2461 gggaaagcgc tgtgtcgcca gccagcgtcg gtcctgatgc ggagttgagc cttgtaagct
     2521 cttgtgagca gcccaccatc cacagcaaag gcattttgcg ttcgtcttat gtcaagaaat
     2581 caccttcctc aagccagtga agtacagact taatccatca ggacggagtg aatttgtttc
     2641 attcccattg gtattaatta atggggccac acaattcatc tgtatcacct gaaaagaaga
     2701 gctttgtttc aggaaccaaa tcacacaatt ttcagtcatg gaacaataaa tcccctagaa
     2761 gaggaccttt tttaaagtgt aatctgctct atttttaatg ttacaattca agcttgattg
     2821 cctgctggtc atttaagata ccaattctgc ttccgagtaa tggattttta tcaccattta
     2881 aatcatgata aacaaaatgg aaacacaaat taagggaaat ttggtctgat tttccagaac
     2941 cagagtaagc catttcaagt aacccctctg aagagttggg tggtgtgaat tggtttgtgt
     3001 atgttagtat gtgtgtatgt attgatacac acgttcccac aggacacagt tggcttcatt
     3061 atgaatgggg gtgcaggtaa aacttgttct catgccaaac tgcaattttc tcttaccctg
     3121 taaagtgcag tttagatcaa tcccatgtct tcgttaaata ctctttttaa cagtcctaaa
     3181 cttagaaact atttctaatt ggatcacaag aaatgtaagt tgtgtaactt actttgaatg
     3241 tcatggatat gttctcaatt taaattttaa ggagcaatac cattggaatc atgctgatga
     3301 taactgattt aaagaaggcc aggtgacctg cataagatca cttgaacagc atgtttcctg
     3361 taactatcct tatattctcg caaaaggtct ataaaatatt tgtttaaaat ttttttgtat
     3421 caaaatattt ggaaaattag aagcttcttt ttaacatgta ttgatatgac ttgaattatt
     3481 ttatgaaatt aagagccctg tatacctgta aatcttttca cataatatca tttaagcttt
     3541 tgtttgtgct actgttgatt tacagcttag ttggtacttg gtttatcttt aaaagaatgc
     3601 aatcaatgtg catgctttta tgtttttcgc agaagggtgt gttgggatga aagtaaaaga
     3661 aaaaataaaa tctttcactg tc
//
LOCUS       XM_032618533            1653 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus farnesyltransferase, CAAX box, alpha
            (FNTA), transcript variant X1, mRNA.
ACCESSION   XM_032618533
VERSION     XM_032618533.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1653
                     /gene="FNTA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 6 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746809"
     CDS             25..1140
                     /gene="FNTA"
                     /codon_start=1
                     /product="protein
                     farnesyltransferase/geranylgeranyltransferase type-1
                     subunit alpha isoform X1"
                     /protein_id="XP_032474424.1"
                     /db_xref="GeneID:116746809"
                     /translation="MAAADGVGEAAQGGEPGQPEPPPPQPHPPPPQLQQEEAAASPMD
                     DGFLSLDSPTYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSEKFQDVYDYFRAVLQRD
                     ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV
                     WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELHYVDQL
                     LKEDVRNNSVWNQRYFVISNTMGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL
                     QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE
                     ILAKEKDTIRKEYWRYIGRSLQSKHSTESDPPTNVQQ"
     misc_feature    190..1095
                     /gene="FNTA"
                     /note="farnesyltranstransferase; Region: PLN02789"
                     /db_xref="CDD:215423"
ORIGIN      
        1 tcctccgctg ggagccgagg agagatggcg gccgccgacg gcgtcgggga ggctgcgcag
       61 ggcggggagc caggtcagcc ggagccgccg ccgccccagc cgcatccccc gccgccccag
      121 ctgcagcaag aagaggcggc ggcgtcccct atggacgacg ggttcctgag cctggactcg
      181 cccacctatg tcctgtacag ggacagagca gaatgggctg atatagatcc agtgccgcag
      241 aatgatggcc ccaatccagt ggtccagatc atttatagtg aaaaatttca ggatgtttat
      301 gattatttcc gggctgtcct gcagcgtgac gagagaagtg aacgagcttt taagctaacc
      361 agagatgcta tcgagttaaa tgcagccaat tacacagtgt ggcattttcg gagagttctc
      421 ttaaagtcac ttcaaaagga tctacatgag gaaatgaact acatcacggc aataattgag
      481 gaacagccca aaaactatca agtttggcat catagacgag tgctagtgga atggctgaga
      541 gacccatctc aggagcttga gtttattgct gatattctta atcaggatgc aaagaattat
      601 cacgcctggc aacatcgaca atgggttatt caggaattta aactttggga taatgagctg
      661 cattatgtag accaacttct caaagaggat gtgagaaata actctgtctg gaaccaaaga
      721 tactttgtaa tttctaacac catgggctac aatgatcgtg ctgtattgga gagagaagtc
      781 cagtacactc tggaaatgat caaactagta ccacataatg aaagtgcttg gaactatttg
      841 aaagggattt tgcaggatcg tggtctttcc aagtatccca acctgttaaa tcaattactt
      901 gatttacaac caagtcacag ttccccctac ctaattgcct ttctcgtgga catctatgaa
      961 gacatgctag aaaaccaatg tgacaacaag gaggacattc ttaataaagc attagagtta
     1021 tgtgaaatcc tagctaaaga aaaggacact ataagaaagg aatattggag atatattgga
     1081 agatcccttc aaagcaaaca cagcacagaa agtgacccac ctacaaatgt acagcaataa
     1141 caccatctag aagaacttga tgggatgctt ttatttttct aagagactct aacgcaggag
     1201 ttaaaaacca gagcgatcat cccctttgcc tgtggtgtga aacgtacatt acacgggcac
     1261 tgctttttaa catgaaccca gtgtgatgct cctggggtgc taatgctgtt cagaccggtt
     1321 cttagtgatt tgattcttgt taagcagagt gattcagggg agggaggaga aacaggaagt
     1381 ccccagagga acttggtagc ctttcagcat tcactgtaac cccttagcag caactgccct
     1441 aaacggtgta tgtgtcagga tttgcagcgt taatgtttgc aggcaacgca tatgtgaagg
     1501 atatgagtca cttacatttc agttcagaaa gcagggagtg cagttgttac attagagctg
     1561 ctctgccaca ctcacagtat cttgctatca ctgtaaccaa ctaatgccaa aagaatggtt
     1621 ttgtaataaa attatagctg tatcctaaaa caa
//
LOCUS       XM_032618534            1548 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus farnesyltransferase, CAAX box, alpha
            (FNTA), transcript variant X2, mRNA.
ACCESSION   XM_032618534
VERSION     XM_032618534.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1548
                     /gene="FNTA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746809"
     CDS             25..1035
                     /gene="FNTA"
                     /codon_start=1
                     /product="protein
                     farnesyltransferase/geranylgeranyltransferase type-1
                     subunit alpha isoform X2"
                     /protein_id="XP_032474425.1"
                     /db_xref="GeneID:116746809"
                     /translation="MAAADGVGEAAQGGEPGQPEPPPPQPHPPPPQLQQEEAAASPMD
                     DGFLSLDSPTYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSEKFQDVYDYFRAVLQRD
                     ERSERAFKLTRDAIELNAANYTVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW
                     QHRQWVIQEFKLWDNELHYVDQLLKEDVRNNSVWNQRYFVISNTMGYNDRAVLEREVQ
                     YTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY
                     EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTESDPPTNV
                     QQ"
     misc_feature    190..990
                     /gene="FNTA"
                     /note="farnesyltranstransferase; Region: PLN02789"
                     /db_xref="CDD:215423"
ORIGIN      
        1 tcctccgctg ggagccgagg agagatggcg gccgccgacg gcgtcgggga ggctgcgcag
       61 ggcggggagc caggtcagcc ggagccgccg ccgccccagc cgcatccccc gccgccccag
      121 ctgcagcaag aagaggcggc ggcgtcccct atggacgacg ggttcctgag cctggactcg
      181 cccacctatg tcctgtacag ggacagagca gaatgggctg atatagatcc agtgccgcag
      241 aatgatggcc ccaatccagt ggtccagatc atttatagtg aaaaatttca ggatgtttat
      301 gattatttcc gggctgtcct gcagcgtgac gagagaagtg aacgagcttt taagctaacc
      361 agagatgcta tcgagttaaa tgcagccaat tacacagtgt ggcatcatag acgagtgcta
      421 gtggaatggc tgagagaccc atctcaggag cttgagttta ttgctgatat tcttaatcag
      481 gatgcaaaga attatcacgc ctggcaacat cgacaatggg ttattcagga atttaaactt
      541 tgggataatg agctgcatta tgtagaccaa cttctcaaag aggatgtgag aaataactct
      601 gtctggaacc aaagatactt tgtaatttct aacaccatgg gctacaatga tcgtgctgta
      661 ttggagagag aagtccagta cactctggaa atgatcaaac tagtaccaca taatgaaagt
      721 gcttggaact atttgaaagg gattttgcag gatcgtggtc tttccaagta tcccaacctg
      781 ttaaatcaat tacttgattt acaaccaagt cacagttccc cctacctaat tgcctttctc
      841 gtggacatct atgaagacat gctagaaaac caatgtgaca acaaggagga cattcttaat
      901 aaagcattag agttatgtga aatcctagct aaagaaaagg acactataag aaaggaatat
      961 tggagatata ttggaagatc ccttcaaagc aaacacagca cagaaagtga cccacctaca
     1021 aatgtacagc aataacacca tctagaagaa cttgatggga tgcttttatt tttctaagag
     1081 actctaacgc aggagttaaa aaccagagcg atcatcccct ttgcctgtgg tgtgaaacgt
     1141 acattacacg ggcactgctt tttaacatga acccagtgtg atgctcctgg ggtgctaatg
     1201 ctgttcagac cggttcttag tgatttgatt cttgttaagc agagtgattc aggggaggga
     1261 ggagaaacag gaagtcccca gaggaacttg gtagcctttc agcattcact gtaacccctt
     1321 agcagcaact gccctaaacg gtgtatgtgt caggatttgc agcgttaatg tttgcaggca
     1381 acgcatatgt gaaggatatg agtcacttac atttcagttc agaaagcagg gagtgcagtt
     1441 gttacattag agctgctctg ccacactcac agtatcttgc tatcactgta accaactaat
     1501 gccaaaagaa tggttttgta ataaaattat agctgtatcc taaaacaa
//
LOCUS       XM_032618535            3380 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity phosphatase 4 (DUSP4),
            transcript variant X1, mRNA.
ACCESSION   XM_032618535
VERSION     XM_032618535.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3380
                     /gene="DUSP4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746810"
     CDS             120..956
                     /gene="DUSP4"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 4 isoform
                     X1"
                     /protein_id="XP_032474426.1"
                     /db_xref="GeneID:116746810"
                     /translation="MYREPPCGPAARRKADANVKAALDGQPLGGYERFSSEYPEFCSK
                     TKALAAIPPAVPPSTAESLDLGCSSCGTPLHDQGGPVEILPFLYLGSAYHAARRDMLD
                     ALGITALLNVSSDCPNHFEGHYQYKCIPVEDSHKADISSWFMVAIEYIDAVKDCRGRV
                     LVHCQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPNFSFMGQLLQFESQV
                     LATSCAVEAASPSGPLRERGKATPTPTSQFVFSFPVSVGGHPAPSSLPYLHSPITTSP
                     SC"
     misc_feature    357..779
                     /gene="DUSP4"
                     /note="dual specificity phosphatase domain of dual
                     specificity protein phosphatase 4; Region: DSP_DUSP4;
                     cd14640"
                     /db_xref="CDD:350488"
ORIGIN      
        1 gcgcgcagac acttaggccc cgctcccggg gaaacagatt tttaaggctt ccgcctcggg
       61 ctcgtggcac ctccctggtt cccccgaatt ccgccgggag accccggagc cagacctgta
      121 tgtaccgaga gccgccctgc ggaccggccg cccggcgcaa ggcagatgct aatgtgaagg
      181 ctgcgttgga cgggcagccc ttgggtggct atgagaggtt ttcctccgag tacccggaat
      241 tctgttccaa aaccaaggcc ctggccgcca tcccacctgc tgtgccccca agcacggccg
      301 agtccttgga cctgggctgc agctcctgcg gcaccccact gcacgaccag gggggtcccg
      361 tggagatcct tcccttcctc tacctcggca gcgcctatca cgcagcccgg cgagacatgc
      421 tggacgccct ggggatcaca gccttgctga acgtctcctc tgactgcccg aaccactttg
      481 aaggacatta ccagtacaag tgcatcccgg tggaggacag ccacaaggcc gacatcagct
      541 cctggttcat ggtggccatc gagtacatcg atgcggtgaa ggactgccgc gggcgcgtgc
      601 tggtgcactg ccaggccggc atctcgcgct cggccaccat ctgcctggcc tacctgatga
      661 tgaagaagcg cgtgaggctc gaggaggcct tcgagttcgt gaagcagcgg cggagcatca
      721 tctcgcccaa cttcagcttc atggggcagc tgctgcagtt cgagtcgcag gtgctggcca
      781 cgtcctgcgc ggtggaggcg gccagcccgt cggggccgct gcgcgagcgg ggcaaggcca
      841 ctcccacccc tacgtcgcag ttcgtcttca gcttcccggt ctccgtcggg gggcacccgg
      901 cgcccagcag cctgccctat ctgcacagcc ccatcaccac ctcccccagc tgttagagcc
      961 tctcgaatcc tccctcccct acacccatcg gctctcagca cgggttgggt ggcgccctgt
     1021 gcgggcagca ggtcgggact ggcccgcagg gggcgacaga gctccttcca tccatctctc
     1081 tttggccaac cggggggcca gctagaatgg caataaggac ttcgaataca tatttaacgc
     1141 aaacaaacac aacactccaa cttagagcaa taatgtcttc ctcggcaggc agggaagacc
     1201 tgggttttgg tttgtgcgtc agttttactt ttcagatagg aatttcttac ctcatttttt
     1261 tcagcagtaa ggcttgaagt taggaaaccc gcagatcctg gcaaatgtgc ccacccagtt
     1321 ctgttgaggg ggatgggaag ggagggaggg gagggaaagg gacaagataa aaacaggttc
     1381 gccagaagtg cctggttctg tgtgctcggt ccttttgttg ttgttgtagt tacaggattt
     1441 tttttttttt taaagaaatc ttttaggaca tggttttcct ttctaagtca ccaccaacag
     1501 gtgaacaatt atgcttaata ataaataaaa gtatttatta agaatttcct cagagtatgt
     1561 aagtacaaag agtctagtga tggtgaattt agaatatatt tatgttaacg tggatcagca
     1621 gagcacaata gcatgcagac gtcaaagcag ttaggaagta agtggtgtgt acaagttcgc
     1681 atgatcagct tgcgtttgtt accgctgaga aggagtcagg gtggggtggg aggaggaaga
     1741 aaggaaggga ctactttttc attacagcct ccctcggtat ctgccgggga ttggttccag
     1801 caccccttcc ctccatcgcg gatacccaaa tccgtggatg cgtaaatccg ctgattcttg
     1861 catccgcgga tactgcgtcc gcgcatactg catccgcgaa tacggagcgt ggagcgcact
     1921 tggttcttgg gcacatgggc cactgaagcg atttgaaacc acaacaatac aaccgtttct
     1981 ggtgatcaat aactcactgt agcggtggaa gcatttttct catagacctg cctgagaact
     2041 tgtatatcat ctgtgataaa tgccatatca tataaggtgc tcgtaaaaaa aattgggcgc
     2101 aattcagctt ttcctgcagt gaatcatttg gcaaggccat tgggggaacc cagctaagag
     2161 agatagaccc gaaatggatc cttttggaag tggaagcacc atcttttttc tcttttacat
     2221 aaatcaagag tttttaattt tagggggttt gcttggaatg aagtacacca acaaattctt
     2281 gggttcttaa aattcgtggt gtcggtgaat atttttaaag tgaataggtg aataaaaaga
     2341 agggagtgga caccccattt caggtccctt ggaagtctag gacagcaaga gagagtgagt
     2401 gaagagtcgg gcagactctg tgggggagct ggctgcttgg cttctgtgac aggcatccag
     2461 ggcacttgtg tgccatctta gaatcctttc ttgggatagt gccattttca gggccctttc
     2521 cagatggagg aatggctttt ggagaaagaa ggagatgggt tgggcttggg gggagggagg
     2581 acgggacaaa ccacgtgtta tttaatttgt agtatcgtgg aacagtgttg ttacccagta
     2641 ccaggttaga ggtaattcca aacttgtcta gaagcgagag catgcttttt ggttttgttt
     2701 tttgggttct ttttagtctt ctgaggatct aagtgatgca cattcctgct cacccataga
     2761 taacttcaag cctcaaggtt ggaatagtgt tggaatgctc cttcttagcc ccacatccca
     2821 gacaggacca ggttccttac atttccttcc acaaacatga gcctgtgttg gcatcatttg
     2881 tcctgccttt cccaagccct gtctgaaaaa gcgtgggttc ccacatgcag ataggcctgc
     2941 aggagggact gcttgagaga ggagggaaag tagcttttta cagaatgagt gtacattggc
     3001 caaaacttgt gtatcctgct ttcccagact ggatcccaac cacacggtcg gaacccagga
     3061 cctgcgccag acaggtcttt tccctgcttt ccaattcaag tcttctgtca cagcgtcaaa
     3121 ccactattta taaagctatt ttctttgtac ccaatagcag ccccaaaact cttagaaatc
     3181 aaataggaaa ttggcttgat tggaaacagg gacttgggtc actattcccc catcagaagc
     3241 ctctttgatg acttggaata gctgtaatga agacagcacc gcagggtctg tccaaatggc
     3301 cagtgggttt caacaggtgt ctccccatgg agtgatttct ggtgacgcga aacatgtgtc
     3361 atgggtggaa agcattgcca
//
LOCUS       XM_032618536            3813 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity phosphatase 4 (DUSP4),
            transcript variant X2, mRNA.
ACCESSION   XM_032618536
VERSION     XM_032618536.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3813
                     /gene="DUSP4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 26 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746810"
     CDS             199..1389
                     /gene="DUSP4"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 4 isoform
                     X2"
                     /protein_id="XP_032474427.1"
                     /db_xref="GeneID:116746810"
                     /translation="MVTVEELREMDCSVLKRLMNRDENGGGAGGSGSGSHGALGLLSG
                     GKCLLLDCRPFLAHSAGYIRGSVNVRCNTIVRRRAKGSVSLEQILPAEEEVRARLRSG
                     LYSAVIVYDERSPRAESLREDSTVSLVVQALRRNAERTDICLLKGGYERFSSEYPEFC
                     SKTKALAAIPPAVPPSTAESLDLGCSSCGTPLHDQGGPVEILPFLYLGSAYHAARRDM
                     LDALGITALLNVSSDCPNHFEGHYQYKCIPVEDSHKADISSWFMVAIEYIDAVKDCRG
                     RVLVHCQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPNFSFMGQLLQFES
                     QVLATSCAVEAASPSGPLRERGKATPTPTSQFVFSFPVSVGGHPAPSSLPYLHSPITT
                     SPSC"
     misc_feature    223..678
                     /gene="DUSP4"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; Region: DSP_MapKP;
                     cd01446"
                     /db_xref="CDD:238723"
     misc_feature    424..432
                     /gene="DUSP4"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     misc_feature    790..1212
                     /gene="DUSP4"
                     /note="dual specificity phosphatase domain of dual
                     specificity protein phosphatase 4; Region: DSP_DUSP4;
                     cd14640"
                     /db_xref="CDD:350488"
ORIGIN      
        1 cataagccga ggagaggaaa ctctggctgg ggcagaccgc ggagctccgg cagttcgtgg
       61 ggaacggcgg ccagagcagc acaacgggca aaatacaata gaggcgacaa cggaaagaag
      121 cccttggtcc tctcccccca gctggcccgg gcgtccttcg cctcctcgcg tgcccagcag
      181 ccgcggttcc tggcgaccat ggtgacggtg gaggagctgc gggagatgga ctgcagcgtg
      241 ctcaaaaggc tgatgaaccg ggacgagaac ggtggcggcg cgggcggcag cggcagcggc
      301 agccacggcg ccctggggct gctgagcggc ggcaagtgcc tgctgctgga ctgccgaccg
      361 ttcctggcgc acagcgccgg ctacattcga ggctcagtca acgtgcgctg caacaccatc
      421 gtgcggcggc gggccaaggg ctcggtgagc ctggagcaga tcctgcccgc ggaggaggag
      481 gtccgcgccc gcctgcgctc cggcctctat tcagccgtca tcgtctacga cgagcgcagc
      541 ccgcgcgccg agagcctccg cgaggacagc accgtgtcac tggtggtgca ggcgctgcga
      601 cgcaacgccg agcgcacgga catctgcctg ctcaaaggtg gctatgagag gttttcctcc
      661 gagtacccgg aattctgttc caaaaccaag gccctggccg ccatcccacc tgctgtgccc
      721 ccaagcacgg ccgagtcctt ggacctgggc tgcagctcct gcggcacccc actgcacgac
      781 caggggggtc ccgtggagat ccttcccttc ctctacctcg gcagcgccta tcacgcagcc
      841 cggcgagaca tgctggacgc cctggggatc acagccttgc tgaacgtctc ctctgactgc
      901 ccgaaccact ttgaaggaca ttaccagtac aagtgcatcc cggtggagga cagccacaag
      961 gccgacatca gctcctggtt catggtggcc atcgagtaca tcgatgcggt gaaggactgc
     1021 cgcgggcgcg tgctggtgca ctgccaggcc ggcatctcgc gctcggccac catctgcctg
     1081 gcctacctga tgatgaagaa gcgcgtgagg ctcgaggagg ccttcgagtt cgtgaagcag
     1141 cggcggagca tcatctcgcc caacttcagc ttcatggggc agctgctgca gttcgagtcg
     1201 caggtgctgg ccacgtcctg cgcggtggag gcggccagcc cgtcggggcc gctgcgcgag
     1261 cggggcaagg ccactcccac ccctacgtcg cagttcgtct tcagcttccc ggtctccgtc
     1321 ggggggcacc cggcgcccag cagcctgccc tatctgcaca gccccatcac cacctccccc
     1381 agctgttaga gcctctcgaa tcctccctcc cctacaccca tcggctctca gcacgggttg
     1441 ggtggcgccc tgtgcgggca gcaggtcggg actggcccgc agggggcgac agagctcctt
     1501 ccatccatct ctctttggcc aaccgggggg ccagctagaa tggcaataag gacttcgaat
     1561 acatatttaa cgcaaacaaa cacaacactc caacttagag caataatgtc ttcctcggca
     1621 ggcagggaag acctgggttt tggtttgtgc gtcagtttta cttttcagat aggaatttct
     1681 tacctcattt ttttcagcag taaggcttga agttaggaaa cccgcagatc ctggcaaatg
     1741 tgcccaccca gttctgttga gggggatggg aagggaggga ggggagggaa agggacaaga
     1801 taaaaacagg ttcgccagaa gtgcctggtt ctgtgtgctc ggtccttttg ttgttgttgt
     1861 agttacagga tttttttttt ttttaaagaa atcttttagg acatggtttt cctttctaag
     1921 tcaccaccaa caggtgaaca attatgctta ataataaata aaagtattta ttaagaattt
     1981 cctcagagta tgtaagtaca aagagtctag tgatggtgaa tttagaatat atttatgtta
     2041 acgtggatca gcagagcaca atagcatgca gacgtcaaag cagttaggaa gtaagtggtg
     2101 tgtacaagtt cgcatgatca gcttgcgttt gttaccgctg agaaggagtc agggtggggt
     2161 gggaggagga agaaaggaag ggactacttt ttcattacag cctccctcgg tatctgccgg
     2221 ggattggttc cagcacccct tccctccatc gcggataccc aaatccgtgg atgcgtaaat
     2281 ccgctgattc ttgcatccgc ggatactgcg tccgcgcata ctgcatccgc gaatacggag
     2341 cgtggagcgc acttggttct tgggcacatg ggccactgaa gcgatttgaa accacaacaa
     2401 tacaaccgtt tctggtgatc aataactcac tgtagcggtg gaagcatttt tctcatagac
     2461 ctgcctgaga acttgtatat catctgtgat aaatgccata tcatataagg tgctcgtaaa
     2521 aaaaattggg cgcaattcag cttttcctgc agtgaatcat ttggcaaggc cattggggga
     2581 acccagctaa gagagataga cccgaaatgg atccttttgg aagtggaagc accatctttt
     2641 ttctctttta cataaatcaa gagtttttaa ttttaggggg tttgcttgga atgaagtaca
     2701 ccaacaaatt cttgggttct taaaattcgt ggtgtcggtg aatattttta aagtgaatag
     2761 gtgaataaaa agaagggagt ggacacccca tttcaggtcc cttggaagtc taggacagca
     2821 agagagagtg agtgaagagt cgggcagact ctgtggggga gctggctgct tggcttctgt
     2881 gacaggcatc cagggcactt gtgtgccatc ttagaatcct ttcttgggat agtgccattt
     2941 tcagggccct ttccagatgg aggaatggct tttggagaaa gaaggagatg ggttgggctt
     3001 ggggggaggg aggacgggac aaaccacgtg ttatttaatt tgtagtatcg tggaacagtg
     3061 ttgttaccca gtaccaggtt agaggtaatt ccaaacttgt ctagaagcga gagcatgctt
     3121 tttggttttg ttttttgggt tctttttagt cttctgagga tctaagtgat gcacattcct
     3181 gctcacccat agataacttc aagcctcaag gttggaatag tgttggaatg ctccttctta
     3241 gccccacatc ccagacagga ccaggttcct tacatttcct tccacaaaca tgagcctgtg
     3301 ttggcatcat ttgtcctgcc tttcccaagc cctgtctgaa aaagcgtggg ttcccacatg
     3361 cagataggcc tgcaggaggg actgcttgag agaggaggga aagtagcttt ttacagaatg
     3421 agtgtacatt ggccaaaact tgtgtatcct gctttcccag actggatccc aaccacacgg
     3481 tcggaaccca ggacctgcgc cagacaggtc ttttccctgc tttccaattc aagtcttctg
     3541 tcacagcgtc aaaccactat ttataaagct attttctttg tacccaatag cagccccaaa
     3601 actcttagaa atcaaatagg aaattggctt gattggaaac agggacttgg gtcactattc
     3661 ccccatcaga agcctctttg atgacttgga atagctgtaa tgaagacagc accgcagggt
     3721 ctgtccaaat ggccagtggg tttcaacagg tgtctcccca tggagtgatt tctggtgacg
     3781 cgaaacatgt gtcatgggtg gaaagcattg cca
//
LOCUS       XM_032618537            3995 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADAM metallopeptidase domain 9 (ADAM9),
            transcript variant X1, mRNA.
ACCESSION   XM_032618537
VERSION     XM_032618537.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3995
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3995
                     /gene="ADAM9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 40 long SRA reads, 9
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746811"
     CDS             236..2695
                     /gene="ADAM9"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 9 isoform X1"
                     /protein_id="XP_032474428.1"
                     /db_xref="GeneID:116746811"
                     /translation="MGSGAGSPSGTLCFLWLLLFGLVSPALGGARSGFQQTSHLSSYE
                     IITPWRLTRERREAPRPYSEQVSYVIQAEGKEHIIHLERNKDLLPKDFVVYTYNKEGA
                     LISDYPDIQNHCHYRGYVEGVYNSSIALSNCFGLRGLLHIENVSYGIEPLQNSSRFEH
                     IFYRMDDVHKEPVKCGVSNKDTEEETTKDEEEEPPSVTQLLRRRRAVLPQTRYVELFI
                     VVDKERYDMMGRNQTAVREEMILLANYLDSMYIMLNIRIVLVGLEIWTNGNLINIIGG
                     AGDVLGNFVQWREKFLITRRRHDSAQLVLKKGFGGTAGMAFVGTVCSRSHAGGINVFG
                     QITVETFASIVAHELGHNLGMNHDDGRDCYCGAKSCIMNSGASGSRNFSTCSAEDFEK
                     LTLNKGGNCLLNIPKPDEAYSAPFCGNKLVDPGEECDCGTPKECELDPCCEGSTCKLK
                     SSAECAYGDCCQDCWFLPGGTLCRGKTNECDVPEYCNGSSQFCQPDVFIQNGYPCQNN
                     RAYCYNGMCQYYDAQCQVIFGSKAKAAPRDCFIDVNSKGDRFGNCGFSGNEYKKCATG
                     NALCGKLQCENVQEMPVFGIVPAIIQTPGRGTKCWGVDFQLGSDVPDPGMVNEGTRCG
                     VGKICRNFQCVNASVLNYDCDIQKKCHGHGVCNSNKNCHCDSGWAPPYCEATGYGGSV
                     DSGPAYNEKNTALRDGLLVFFFVIVPLTALAAFVFVKRDQLQKSYCRRKRSQTYESDG
                     KNQAKVSRQPVSVPGHASSVAPPREVPIYANRFPVPTYAAKQPQQFPSRPPPPQPKVS
                     SQGNLIPARPAPPPPLYSSLT"
     misc_feature    365..724
                     /gene="ADAM9"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    869..1447
                     /gene="ADAM9"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(1274..1279,1286..1288,1304..1306)
                     /gene="ADAM9"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1502..1723
                     /gene="ADAM9"
                     /note="Region: Disintegrin; pfam00200"
                     /db_xref="CDD:459709"
     misc_feature    1733..2143
                     /gene="ADAM9"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 agtgagggtc ttaggggccc gatagaaagt ccgttctccc gccggggacg gatcgctctc
       61 tacgtcagtg tagccagcgc cgcgtcggga gcgagctcgg accagagccg acttgcgtca
      121 gtgccgagcg cgcgcatcgc tgccagctct ggggccccgg cagggctggg aaatggtgga
      181 gcgggcggag gcaggggcga ccgagtgttg aggggaacct gcggactcgg ccgagatggg
      241 atcgggcgcg ggctcgccct ctgggaccct ctgcttcctg tggctgctct tgttcggctt
      301 ggtgagccca gccctcggtg gggctcggtc aggctttcaa cagacctccc atctctcttc
      361 ttatgaaata ataactcctt ggagattaac tagagaaaga agagaagccc ctaggcccta
      421 ctcagagcag gtatcttatg tcattcaagc tgaaggaaaa gagcatatta ttcacttgga
      481 aaggaataag gaccttttac ccaaagattt tgtagtttat acctacaaca aggaaggggc
      541 tctgatctct gactaccctg atatacagaa tcattgtcat tatcggggat acgtggaggg
      601 cgtttataat tcatcgattg ctcttagcaa ctgttttgga ctcagaggct tgctgcatat
      661 agagaatgtg agttatggga ttgaacccct gcaaaacagc tctcgttttg agcacatctt
      721 ttatcgaatg gatgatgtcc acaaagagcc tgtgaaatgt ggggtttcca acaaggatac
      781 agaggaagaa accacaaagg atgaagagga agagcctcct agcgtcactc agctacttcg
      841 aagaagaaga gctgtcctgc cacagacccg ctatgtggag ctgttcattg tcgtagacaa
      901 ggaaaggtat gacatgatgg gaagaaacca gactgcagtg cgagaagaga tgattctttt
      961 agcaaactac ttggatagca tgtacatcat gttaaatatt cgaattgtgc tagttgggct
     1021 ggagatttgg acaaatggaa atctgatcaa cataatcgga ggtgcgggtg atgtgttggg
     1081 gaactttgta cagtggcggg aaaagtttct tataacacgt cggagacatg acagtgcaca
     1141 gctagttctg aagaaaggtt ttggtgggac cgcgggaatg gcgtttgtgg gaacagtgtg
     1201 ttcaaggagc cacgcgggcg ggattaacgt gtttgggcaa atcacggtgg agacatttgc
     1261 atccattgtt gctcatgagt tgggtcataa ccttggaatg aatcatgatg atgggagaga
     1321 ttgttattgt ggagcaaaga gctgcatcat gaattcagga gcatcaggtt ccagaaactt
     1381 cagcacctgc agtgcagaag actttgagaa gttaacttta aataaaggtg gaaactgcct
     1441 tcttaatatt ccaaagcctg acgaagctta cagtgctcct ttctgtggta ataaattggt
     1501 ggaccctggg gaagagtgtg actgcggtac tccaaaggaa tgtgaattgg acccttgttg
     1561 tgaaggaagt acttgtaaac ttaaatcatc tgctgaatgt gcatatggcg actgttgtca
     1621 agactgctgg ttccttccag gaggtacttt gtgccgagga aaaaccaatg aatgtgatgt
     1681 tccagaatat tgcaacggtt cttctcagtt ctgtcagcca gatgttttta ttcagaatgg
     1741 atacccttgc cagaataaca gagcctattg ttacaatggc atgtgccaat attatgatgc
     1801 tcagtgtcaa gtcatctttg gctcaaaagc caaggctgct ccaagggatt gtttcattga
     1861 tgtgaattcc aaaggtgaca gatttggcaa ttgtggtttc tctggcaatg aatacaagaa
     1921 gtgtgccact gggaatgctt tgtgtggaaa gcttcaatgt gagaatgtac aagaaatgcc
     1981 tgtatttgga attgtgcctg ctattattca gactcctggg agaggcacca aatgttgggg
     2041 tgtggatttc cagcttgggt cagatgttcc cgatcctggc atggtgaatg aaggcaccag
     2101 atgtggcgtt ggaaagatct gtagaaattt ccaatgtgta aatgcatctg ttctgaatta
     2161 tgactgtgat attcagaaaa agtgtcacgg acatggggta tgtaacagca ataagaattg
     2221 tcactgtgac agcggctggg ctccccccta ttgtgaggct acagggtacg gaggaagtgt
     2281 ggatagtgga cctgcataca atgaaaagaa taccgccttg agggacggac ttctggtgtt
     2341 cttcttcgtc attgttcctc ttactgcatt ggctgctttt gtcttcgtta agagagacca
     2401 gctacagaaa agctactgca gaaggaagag atcacaaaca tatgagtcag atggcaaaaa
     2461 tcaagcaaaa gtttctagac agccagtgag tgttcctgga catgcttctt cagtggctcc
     2521 tcccagagaa gttcctatat atgcaaacag atttccagta ccaacttatg cagccaagca
     2581 gcctcagcag ttcccatcaa ggccgcctcc accacaaccg aaagtatcat ctcagggaaa
     2641 tttaattcct gctcgtcctg ctcctccacc tccgttatat agttccctca cttgattgtt
     2701 ttttttttta acctttcatt ttgcagacat cttcagggaa ctgagctaat actttttttt
     2761 ttcctgatat tttcttgaaa aacctttctt cctgctgcaa ttatgaatga aaacaaaata
     2821 ccaccaaaca aactttatta atacagaaaa acagaacttg agtagtggga aatgagaaac
     2881 agaagaaatg cagtaaagcc agggaattta gaataatatt ttcatttcca ttactgaata
     2941 cattttattc ggtcatctgt gaggttaatg cacctgacat ggattatgtt atttgaacac
     3001 gttactgtag tgattttcaa attaactgta ttggtttaag ttttgtcatt atgtgcttaa
     3061 atgtaattct gaattttgac cttagttatc attaatgtag tttctgattg aacatgtaat
     3121 aacctaatac ctgtgaaaac taattagctg tcaattaata tctaatattt ttaaccttgc
     3181 acagactaat aatcatcaca cactagaatt ttgtgtatct cattcactac atgaataaag
     3241 gaatactctg tcttcagaag aatgcacaaa atacagaatt aagataccat aatataaatt
     3301 taaaagtgca aaaacacact aaaagtgtgt atgtgtatac ttacacacag ttattatctt
     3361 ccattttaat gaacattcta tggatatatg attctatgga ttctatggat aatagattct
     3421 gtggatctat ctatggataa tgaatattag aaaagttaat ttaataatag aatttctatt
     3481 atgaatcatg ttaaagcata gcatcctttt acaatagcat tgttttaaat taattataaa
     3541 ctttaaggta cgaagtattt aatagaacta atcagatacg ctgttgattc ttggctgtaa
     3601 taaaaagcag gaacaattat aatatcttca atcaattgag ctatcataaa accacttgag
     3661 aatttcataa gcactttaat tttaagtcca aaatctgaaa cttcaaagat tgctattaat
     3721 ataatttaga atgtttacat ttactaaggt gtgcttgata atgtctctgt tgacactaat
     3781 atttttaaag aaattaggct ggagaaagga aggaagaaaa agttttctta gataagtgca
     3841 aaaaagttag tggtatctgt gagttattgt cccagctatg ataaaaaaat gaatttttac
     3901 tgtggaagaa atggtatgaa tgataaaaat ttaagcacct aaattttttt ggtaattttt
     3961 cataataaag tttattaata agtttattaa ctgaa
//
LOCUS       XM_032618538            3919 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADAM metallopeptidase domain 9 (ADAM9),
            transcript variant X2, mRNA.
ACCESSION   XM_032618538
VERSION     XM_032618538.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3919
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3919
                     /gene="ADAM9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 29 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746811"
     CDS             214..2619
                     /gene="ADAM9"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 9 isoform X2"
                     /protein_id="XP_032474429.1"
                     /db_xref="GeneID:116746811"
                     /translation="MGSGAGSPSGTLCFLWLLLFGLVSPALGGARSGFQQTSHLSSYE
                     IITPWRLTRERREAPRPYSEQVSYVIQAEGKEHIIHLERNKDLLPKDFVVYTYNKEGA
                     LISDYPDIQNHCHYRGYVEGVYNSSIALSNCFGLSSRFEHIFYRMDDVHKEPVKCGVS
                     NKDTEEETTKDEEEEPPSVTQLLRRRRAVLPQTRYVELFIVVDKERYDMMGRNQTAVR
                     EEMILLANYLDSMYIMLNIRIVLVGLEIWTNGNLINIIGGAGDVLGNFVQWREKFLIT
                     RRRHDSAQLVLKKGFGGTAGMAFVGTVCSRSHAGGINVFGQITVETFASIVAHELGHN
                     LGMNHDDGRDCYCGAKSCIMNSGASGSRNFSTCSAEDFEKLTLNKGGNCLLNIPKPDE
                     AYSAPFCGNKLVDPGEECDCGTPKECELDPCCEGSTCKLKSSAECAYGDCCQDCWFLP
                     GGTLCRGKTNECDVPEYCNGSSQFCQPDVFIQNGYPCQNNRAYCYNGMCQYYDAQCQV
                     IFGSKAKAAPRDCFIDVNSKGDRFGNCGFSGNEYKKCATGNALCGKLQCENVQEMPVF
                     GIVPAIIQTPGRGTKCWGVDFQLGSDVPDPGMVNEGTRCGVGKICRNFQCVNASVLNY
                     DCDIQKKCHGHGVCNSNKNCHCDSGWAPPYCEATGYGGSVDSGPAYNEKNTALRDGLL
                     VFFFVIVPLTALAAFVFVKRDQLQKSYCRRKRSQTYESDGKNQAKVSRQPVSVPGHAS
                     SVAPPREVPIYANRFPVPTYAAKQPQQFPSRPPPPQPKVSSQGNLIPARPAPPPPLYS
                     SLT"
     misc_feature    343..681
                     /gene="ADAM9"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    793..1371
                     /gene="ADAM9"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(1198..1203,1210..1212,1228..1230)
                     /gene="ADAM9"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1426..1647
                     /gene="ADAM9"
                     /note="Region: Disintegrin; pfam00200"
                     /db_xref="CDD:459709"
     misc_feature    1657..2067
                     /gene="ADAM9"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 tagaaagtcc gttctcccgc cggggacgga tcgctctcta cgtcagtgta gccagcgccg
       61 cgtcgggagc gagctcggac cagagccgac ttgcgtcagt gccgagcgcg cgcatcgctg
      121 ccagctctgg ggccccggca gggctgggaa atggtggagc gggcggaggc aggggcgacc
      181 gagtgttgag gggaacctgc ggactcggcc gagatgggat cgggcgcggg ctcgccctct
      241 gggaccctct gcttcctgtg gctgctcttg ttcggcttgg tgagcccagc cctcggtggg
      301 gctcggtcag gctttcaaca gacctcccat ctctcttctt atgaaataat aactccttgg
      361 agattaacta gagaaagaag agaagcccct aggccctact cagagcaggt atcttatgtc
      421 attcaagctg aaggaaaaga gcatattatt cacttggaaa ggaataagga ccttttaccc
      481 aaagattttg tagtttatac ctacaacaag gaaggggctc tgatctctga ctaccctgat
      541 atacagaatc attgtcatta tcggggatac gtggagggcg tttataattc atcgattgct
      601 cttagcaact gttttggact cagctctcgt tttgagcaca tcttttatcg aatggatgat
      661 gtccacaaag agcctgtgaa atgtggggtt tccaacaagg atacagagga agaaaccaca
      721 aaggatgaag aggaagagcc tcctagcgtc actcagctac ttcgaagaag aagagctgtc
      781 ctgccacaga cccgctatgt ggagctgttc attgtcgtag acaaggaaag gtatgacatg
      841 atgggaagaa accagactgc agtgcgagaa gagatgattc ttttagcaaa ctacttggat
      901 agcatgtaca tcatgttaaa tattcgaatt gtgctagttg ggctggagat ttggacaaat
      961 ggaaatctga tcaacataat cggaggtgcg ggtgatgtgt tggggaactt tgtacagtgg
     1021 cgggaaaagt ttcttataac acgtcggaga catgacagtg cacagctagt tctgaagaaa
     1081 ggttttggtg ggaccgcggg aatggcgttt gtgggaacag tgtgttcaag gagccacgcg
     1141 ggcgggatta acgtgtttgg gcaaatcacg gtggagacat ttgcatccat tgttgctcat
     1201 gagttgggtc ataaccttgg aatgaatcat gatgatggga gagattgtta ttgtggagca
     1261 aagagctgca tcatgaattc aggagcatca ggttccagaa acttcagcac ctgcagtgca
     1321 gaagactttg agaagttaac tttaaataaa ggtggaaact gccttcttaa tattccaaag
     1381 cctgacgaag cttacagtgc tcctttctgt ggtaataaat tggtggaccc tggggaagag
     1441 tgtgactgcg gtactccaaa ggaatgtgaa ttggaccctt gttgtgaagg aagtacttgt
     1501 aaacttaaat catctgctga atgtgcatat ggcgactgtt gtcaagactg ctggttcctt
     1561 ccaggaggta ctttgtgccg aggaaaaacc aatgaatgtg atgttccaga atattgcaac
     1621 ggttcttctc agttctgtca gccagatgtt tttattcaga atggataccc ttgccagaat
     1681 aacagagcct attgttacaa tggcatgtgc caatattatg atgctcagtg tcaagtcatc
     1741 tttggctcaa aagccaaggc tgctccaagg gattgtttca ttgatgtgaa ttccaaaggt
     1801 gacagatttg gcaattgtgg tttctctggc aatgaataca agaagtgtgc cactgggaat
     1861 gctttgtgtg gaaagcttca atgtgagaat gtacaagaaa tgcctgtatt tggaattgtg
     1921 cctgctatta ttcagactcc tgggagaggc accaaatgtt ggggtgtgga tttccagctt
     1981 gggtcagatg ttcccgatcc tggcatggtg aatgaaggca ccagatgtgg cgttggaaag
     2041 atctgtagaa atttccaatg tgtaaatgca tctgttctga attatgactg tgatattcag
     2101 aaaaagtgtc acggacatgg ggtatgtaac agcaataaga attgtcactg tgacagcggc
     2161 tgggctcccc cctattgtga ggctacaggg tacggaggaa gtgtggatag tggacctgca
     2221 tacaatgaaa agaataccgc cttgagggac ggacttctgg tgttcttctt cgtcattgtt
     2281 cctcttactg cattggctgc ttttgtcttc gttaagagag accagctaca gaaaagctac
     2341 tgcagaagga agagatcaca aacatatgag tcagatggca aaaatcaagc aaaagtttct
     2401 agacagccag tgagtgttcc tggacatgct tcttcagtgg ctcctcccag agaagttcct
     2461 atatatgcaa acagatttcc agtaccaact tatgcagcca agcagcctca gcagttccca
     2521 tcaaggccgc ctccaccaca accgaaagta tcatctcagg gaaatttaat tcctgctcgt
     2581 cctgctcctc cacctccgtt atatagttcc ctcacttgat tgtttttttt tttaaccttt
     2641 cattttgcag acatcttcag ggaactgagc taatactttt ttttttcctg atattttctt
     2701 gaaaaacctt tcttcctgct gcaattatga atgaaaacaa aataccacca aacaaacttt
     2761 attaatacag aaaaacagaa cttgagtagt gggaaatgag aaacagaaga aatgcagtaa
     2821 agccagggaa tttagaataa tattttcatt tccattactg aatacatttt attcggtcat
     2881 ctgtgaggtt aatgcacctg acatggatta tgttatttga acacgttact gtagtgattt
     2941 tcaaattaac tgtattggtt taagttttgt cattatgtgc ttaaatgtaa ttctgaattt
     3001 tgaccttagt tatcattaat gtagtttctg attgaacatg taataaccta atacctgtga
     3061 aaactaatta gctgtcaatt aatatctaat atttttaacc ttgcacagac taataatcat
     3121 cacacactag aattttgtgt atctcattca ctacatgaat aaaggaatac tctgtcttca
     3181 gaagaatgca caaaatacag aattaagata ccataatata aatttaaaag tgcaaaaaca
     3241 cactaaaagt gtgtatgtgt atacttacac acagttatta tcttccattt taatgaacat
     3301 tctatggata tatgattcta tggattctat ggataataga ttctgtggat ctatctatgg
     3361 ataatgaata ttagaaaagt taatttaata atagaatttc tattatgaat catgttaaag
     3421 catagcatcc ttttacaata gcattgtttt aaattaatta taaactttaa ggtacgaagt
     3481 atttaataga actaatcaga tacgctgttg attcttggct gtaataaaaa gcaggaacaa
     3541 ttataatatc ttcaatcaat tgagctatca taaaaccact tgagaatttc ataagcactt
     3601 taattttaag tccaaaatct gaaacttcaa agattgctat taatataatt tagaatgttt
     3661 acatttacta aggtgtgctt gataatgtct ctgttgacac taatattttt aaagaaatta
     3721 ggctggagaa aggaaggaag aaaaagtttt cttagataag tgcaaaaaag ttagtggtat
     3781 ctgtgagtta ttgtcccagc tatgataaaa aaatgaattt ttactgtgga agaaatggta
     3841 tgaatgataa aaatttaagc acctaaattt ttttggtaat ttttcataat aaagtttatt
     3901 aataagttta ttaactgaa
//
LOCUS       XR_004347880            3867 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADAM metallopeptidase domain 9 (ADAM9),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004347880
VERSION     XR_004347880.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3867
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3867
                     /gene="ADAM9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 8 long SRA reads, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746811"
     misc_RNA        1..3867
                     /gene="ADAM9"
                     /product="ADAM metallopeptidase domain 9, transcript
                     variant X3"
                     /db_xref="GeneID:116746811"
ORIGIN      
        1 tagaaagtcc gttctcccgc cggggacgga tcgctctcta cgtcagtgta gccagcgccg
       61 cgtcgggagc gagctcggac cagagccgac ttgcgtcagt gccgagcgcg cgcatcgctg
      121 ccagctctgg ggccccggca gggctgggaa atggtggagc gggcggaggc aggggcgacc
      181 gagtgttgag gggaacctgc ggactcggcc gagatgggat cgggcgcggg ctcgccctct
      241 gggaccctct gcttcctgtg gctgctcttg ttcggcttgg tgagcccagc cctcggtggg
      301 gctcggtcag gctttcaaca gacctcccat ctctcttctt atgaaataat aactccttgg
      361 agattaacta gagaaagaag agaagcccct aggccctact cagagcaggt atcttatgtc
      421 attcaagctg aaggaaaaga gcatattatt cacttggaaa ggaataagga ccttttaccc
      481 aaagattttg tagtttatac ctacaacaag gaaggggctc tgatctctga ctaccctgat
      541 atacagaatc attgtcatta tcggggatac gtggagggcg tttataattc atcgattgct
      601 cttagcaact gttttggact cagaggcttg ctgcatatag agaatgtgag ttatgggatt
      661 gaacccctgc aaaacagctc tcgttttgag cacatctttt atcgaatgga tgatgtccac
      721 aaagagcctg tgaaatgtgg ggtttccaac aaggatacag aggaagaaac cacaaaggat
      781 gaagaggaag agcctcctag cgtcactcag ctacttcgaa gaagaagagc tgtcctgcca
      841 cagacccgct atgtggagct gttcattgtc gtagacaagg aaaggtatga catgatggga
      901 agaaaccaga ctgcagtgcg agaagagatg attcttttag caaactactt ggatagcatg
      961 tacatcatgt taaatattcg aattgtgcta gttgggctgg agatttggac aaatggaaat
     1021 ctgatcaaca taatcggagg tgcgggtgat gtgttgggga actttgtaca gtggcgggaa
     1081 aagtttctta taacacgtcg gagacatgac agtgcacagc tagttctgaa gaaaggtttt
     1141 ggtgggaccg cgggaatggc gtttgtggga acagtgtgtt caaggagcca cgcgggcggg
     1201 attaacgtgt ttgggcaaat cacggtggag acatttgcat ccattgttgc tcatgagttg
     1261 ggtcataacc ttggaatgaa tcatgatgat gggagagatt gttattgtgg agcaaagagc
     1321 tgcatcatga attcaggagc atcaggttcc agaaacttca gcacctgcag tgcagaagac
     1381 tttgagaagt taactttaaa taaaggtgga aactgccttc ttaatattcc aaagcctgac
     1441 gaagcttaca gtgctccttt ctgtggtaat aaattggtgg accctgggga agagtgtgac
     1501 tgcggtactc caaaggaatg tgaattggac ccttgttgtg aaggaagtac ttgtaaactt
     1561 aaatcatctg ctgaatgtgc atatggcgac tgttgtcaag actgctggtt ccttccagga
     1621 ggtactttgt gccgaggaaa aaccaatgaa tgtgatgttc cagaatattg caacggttct
     1681 tctcagttct gtcagccaga tgtttttatt cagaatggat acccttgcca gaataacaga
     1741 gcctattgtt acaatggcat gtgccaatat tatgatgctc agtgtcaagt catctttggc
     1801 tcaaaagcca aggctgctcc aagggattgt ttcattgatg tgaattccaa aggtgacaga
     1861 tttggcaatt gtggtttctc tggcaatgaa tacaagaagt gtgccactgg gaatgctttg
     1921 tgtggaaagc ttcaatgtga gaatgtacaa gaaatgcctg tatttggaat tgtgcctgct
     1981 attattcaga ctcctgggag aggcaccaaa tgttggggtg tggatttcca gcttgggtca
     2041 gatgttcccg atcctggcat ggtgaatgaa ggcaccagat gtggcgttgg aaagatctgt
     2101 agaaatttcc aatgtgtaaa tgcatctgtt ctgaattatg actgtgatat tcagaaaaag
     2161 tgtcacggac atgggaaaag aataccgcct tgagggacgg acttctggtg ttcttcttcg
     2221 tcattgttcc tcttactgca ttggctgctt ttgtcttcgt taagagagac cagctacaga
     2281 aaagctactg cagaaggaag agatcacaaa catatgagtc agatggcaaa aatcaagcaa
     2341 aagtttctag acagccagtg agtgttcctg gacatgcttc ttcagtggct cctcccagag
     2401 aagttcctat atatgcaaac agatttccag taccaactta tgcagccaag cagcctcagc
     2461 agttcccatc aaggccgcct ccaccacaac cgaaagtatc atctcaggga aatttaattc
     2521 ctgctcgtcc tgctcctcca cctccgttat atagttccct cacttgattg tttttttttt
     2581 taacctttca ttttgcagac atcttcaggg aactgagcta atactttttt ttttcctgat
     2641 attttcttga aaaacctttc ttcctgctgc aattatgaat gaaaacaaaa taccaccaaa
     2701 caaactttat taatacagaa aaacagaact tgagtagtgg gaaatgagaa acagaagaaa
     2761 tgcagtaaag ccagggaatt tagaataata ttttcatttc cattactgaa tacattttat
     2821 tcggtcatct gtgaggttaa tgcacctgac atggattatg ttatttgaac acgttactgt
     2881 agtgattttc aaattaactg tattggttta agttttgtca ttatgtgctt aaatgtaatt
     2941 ctgaattttg accttagtta tcattaatgt agtttctgat tgaacatgta ataacctaat
     3001 acctgtgaaa actaattagc tgtcaattaa tatctaatat ttttaacctt gcacagacta
     3061 ataatcatca cacactagaa ttttgtgtat ctcattcact acatgaataa aggaatactc
     3121 tgtcttcaga agaatgcaca aaatacagaa ttaagatacc ataatataaa tttaaaagtg
     3181 caaaaacaca ctaaaagtgt gtatgtgtat acttacacac agttattatc ttccatttta
     3241 atgaacattc tatggatata tgattctatg gattctatgg ataatagatt ctgtggatct
     3301 atctatggat aatgaatatt agaaaagtta atttaataat agaatttcta ttatgaatca
     3361 tgttaaagca tagcatcctt ttacaatagc attgttttaa attaattata aactttaagg
     3421 tacgaagtat ttaatagaac taatcagata cgctgttgat tcttggctgt aataaaaagc
     3481 aggaacaatt ataatatctt caatcaattg agctatcata aaaccacttg agaatttcat
     3541 aagcacttta attttaagtc caaaatctga aacttcaaag attgctatta atataattta
     3601 gaatgtttac atttactaag gtgtgcttga taatgtctct gttgacacta atatttttaa
     3661 agaaattagg ctggagaaag gaaggaagaa aaagttttct tagataagtg caaaaaagtt
     3721 agtggtatct gtgagttatt gtcccagcta tgataaaaaa atgaattttt actgtggaag
     3781 aaatggtatg aatgataaaa atttaagcac ctaaattttt ttggtaattt ttcataataa
     3841 agtttattaa taagtttatt aactgaa
//
LOCUS       XM_032618539            6042 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule associated scaffold protein 1
            (MTUS1), mRNA.
ACCESSION   XM_032618539
VERSION     XM_032618539.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2231              VOSU01000013.1     17586048-17588278
            2232-2427           VOSU01000013.1     17593604-17593799
            2428-2589           VOSU01000013.1     17615901-17616062
            2590-2724           VOSU01000013.1     17624870-17625004
            2725-2763           VOSU01000013.1     17627326-17627364
            2764-2978           VOSU01000013.1     17656592-17656806
            2979-3045           VOSU01000013.1     17663996-17664062
            3046-3260           VOSU01000013.1     17680149-17680363
            3261-3366           VOSU01000013.1     17681803-17681908
            3367-3440           VOSU01000013.1     17683322-17683395
            3441-3536           VOSU01000013.1     17683546-17683641
            3537-3653           VOSU01000013.1     17686356-17686472
            3654-3751           VOSU01000013.1     17688960-17689057
            3752-3956           VOSU01000013.1     17689615-17689819
            3957-3958           "NN"               1-2
            3959-6042           VOSU01000013.1     17689820-17691903
FEATURES             Location/Qualifiers
     source          1..6042
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6042
                     /gene="MTUS1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 long SRA read, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746814"
     CDS             135..4010
                     /gene="MTUS1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: microtubule-associated
                     tumor suppressor 1"
                     /protein_id="XP_032474430.1"
                     /db_xref="GeneID:116746814"
                     /translation="MNDDNSDDKTEDELQSLFISDKNGNTYAYNQKSPRTQNSSTNNV
                     SWNSANPDDMVVDYETNSAVAFGENISLNPQCVEVLEHQKSSSDFVSKEMLDMHKDST
                     CLSFAHVVNTEEPKDLRNSCHSLESFQDQSVETSLPFVWNPNDDDLNCTENPTALALN
                     QTFDMKVDNVNCTFITHDTTGKSQSLPTTASLPPTSMRSRNTSSSCCVPPPSHSDKIY
                     VREMSYDRDSFENPQATASQAQDTTYTAFSDMVMQTDVVLPDTENHCHCSSGKVTSEY
                     PDGAQQRLGGEKEIQALTPVSDGMDVPSGSVLQEFFCSSKDEPNSERHSQSSYGQKEM
                     GQNVRETVSNCLIDDECPLLVPAFDKSKTQVLDPEHQVTVAKDTPVASNEKDLGTRNH
                     TIELIPNSPPGQKVVSSFELTWDADDMVISTNNIVCMSTPVLEPTNATFSLSPIEATE
                     KWSKVQKSNRELRRLPNLKGAPMNMSKPNLGKSTTKTNSPLGSKVRKTEIISYPRPNF
                     KNVKAKVVSRPVLPSKDPALSKAAPRPQLTGASSPSSVSSSRPSTALRKTPTSDLNAD
                     TKAEILNNKTHKQHFNKLITSQAVRVTTHSKNASHRVLRTTPAVKSNQEDVDKASSSN
                     SACETGSVAAVFQKIKGELPIKMESTECLQMSYTSNIDRISPENKGEKENGTLMAKQE
                     LKKEIMNETFDYGSLFLGSASKTATISGRSLAKPNCSILRKTPGPKAKVGPSVSCLRR
                     NSDSRNLNSDRAVSPQRIRRVSSSGKPASLKTAQPSWVNSPRPLPKSKASLKSSALRR
                     TGSTSSVASTHTDLSTYSNNSGNNAVIKYEEKPPKPAFQNGSSGSLYLKPLVPRAHVH
                     LLKTPPKGPSRKGLYTALNAVEKGRQKSPRSLCIQTQTSPDVLSSEKTLELAQYKTKC
                     ENQSGFILQLKQLLSRGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVNLRGELVT
                     ASTTCEKLEKARNELQITYEGFVQKLNQQHQTDLTELENRLKEFYTGECEKLQNIYIE
                     EAEKYKTQLQEQFDNLSAAHETSKLEIEASHSEKIDLLKKAYETSLSEIKKSHEMEKK
                     SLEDLLYEKQESLEKQINGLKSENDTLNEKLKSEEQKRISREKANLKNPQIMYLEQEL
                     ESLKAVLDIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI
                     SRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSPAIPFQSP
                     RNSGSFPSPSISXPDDLPGSWRQTAFLQY"
     misc_feature    2961..>3842
                     /gene="MTUS1"
                     /note="RecF/RecN/SMC N terminal domain; Region: SMC_N;
                     cl47134"
                     /db_xref="CDD:481474"
ORIGIN      
        1 ttcaagacag cttagactaa gaaactttca actgtgctga aaaacttagg agatggacac
       61 attttgcttc cctctcattt aaaaggtttt aaagaagaag taaaatggca gaggtttaaa
      121 gttaatattt caggatgaat gatgataatt cagatgacaa gacagaagat gaactgcagt
      181 ccttatttat cagtgataaa aatggaaaca catatgcata caaccaaaaa tcaccacgta
      241 cccaaaactc ttcaaccaat aatgtgagtt ggaattctgc caacccagat gacatggtgg
      301 ttgattatga aaccaactct gctgtggcct ttggtgaaaa tatttcttta aaccctcagt
      361 gtgttgaagt acttgaacac caaaagtctt caagtgattt tgttagtaag gagatgttag
      421 atatgcacaa ggattccaca tgtctgtctt ttgcacatgt tgtaaataca gaggaaccca
      481 aagatttgcg taacagttgt cattccctag aatcatttca ggaccagagc gttgagacat
      541 ctctgccttt tgtgtggaat cctaacgatg atgatttgaa ctgtacagaa aaccctactg
      601 ccttggcgct aaaccagaca tttgacatga aagtggataa tgttaactgt accttcataa
      661 cacatgacac cactggaaag agtcagtctt tgcctaccac tgcaagcctg ccgccaacca
      721 gcatgagaag tagaaataca tcttcatcct gttgcgttcc tccaccttcc cattctgata
      781 agatatatgt gagagaaatg agttatgata gagacagctt cgaaaaccct caagctacag
      841 catcacaggc ccaagacaca acttacacag cattttctga catggtgatg caaactgatg
      901 tggttcttcc agatactgaa aatcactgtc actgttcttc gggaaaggtc accagtgagt
      961 acccagatgg ggcacagcaa agactaggcg gagaaaagga gatacaagct ctaacaccag
     1021 tttctgatgg catggatgtt cccagtgggt ctgtattaca agagttcttt tgttcatcta
     1081 aagatgaacc aaatagtgag agacattcac agagctcata tgggcaaaag gaaatgggcc
     1141 aaaatgtaag agaaacagtg tccaattgtc ttatagatga tgaatgccct ttactggtgc
     1201 cagcttttga taaaagcaaa acccaagtgc tggacccaga acatcaagtc actgtggcta
     1261 aagacacacc agttgcctct aatgaaaagg acttgggaac ccgaaatcat accatagaat
     1321 tgataccgaa tagcccgccg ggacaaaagg tggtttcatc atttgaactg acttgggatg
     1381 cagatgatat ggtcattagt acaaataaca tagtttgcat gtccacgcca gtcctagaac
     1441 ccacgaacgc aaccttttct ctctcaccta ttgaagcgac ggagaaatgg agtaaagtgc
     1501 agaagagtaa tcgagagctt agacgtttac cgaacctgaa gggggcaccg atgaacatgt
     1561 ctaaacctaa cctaggaaaa tcaaccacca aaacgaatag ccccctaggc agcaaagtta
     1621 gaaagactga aattataagt tacccaagac caaacttcaa gaatgtcaaa gcaaaagttg
     1681 tatccagacc agtgctaccg tccaaggacc ctgctctatc aaaggctgca ccccgacctc
     1741 agttaactgg ggcctcatca ccctcatcag tgtcttcctc aagaccatcg acagctttga
     1801 gaaaaacacc aacatctgac ttgaatgcag acacaaaagc agaaatccta aataacaaga
     1861 cacacaagca gcactttaat aaactcatta cgagccaggc tgtgcgtgtt acaactcatt
     1921 ctaaaaacgc ttcacacaga gttctaagaa caacacctgc cgtgaaatcg aatcaggaag
     1981 acgttgacaa agcaagttct tccaattcag catgtgagac tgggtccgtg gctgcagttt
     2041 ttcagaagat caaaggtgaa ctccctatta aaatggaaag cacagaatgt ttgcaaatgt
     2101 cctatacttc caacatcgat aggattagcc ctgaaaacaa gggtgaaaaa gaaaatggga
     2161 cactgatggc aaaacaagag ctaaaaaagg aaattatgaa tgagaccttt gactatggtt
     2221 ctctgttttt gggttctgct tcaaaaactg caaccatctc aggtaggagt ctagccaagc
     2281 ccaactgctc cattttgagg aaaacacctg gtccaaaagc caaagtggga ccttctgttt
     2341 catgtttgag gcggaatagt gacagtagaa atctcaactc tgatcgagcc gtatctcccc
     2401 agaggataag gcgtgtgtcc agttctggaa aacctgcatc cttgaaaact gcacagccgt
     2461 cttgggtgaa ttcgcctaga ccacttccta aatccaaagc atctctgaaa agttctgcgc
     2521 tgcggaggac gggaagcacc tcctctgttg ccagcaccca cactgatctg agcacttaca
     2581 gcaataactc tggtaataac gctgtcatca aatatgagga aaaacctcca aaaccagcat
     2641 ttcaaaatgg ctcctcagga tccttatatt tgaagccttt ggtaccccga gctcacgtgc
     2701 acttactaaa aacgcctcca aaaggtcctt caagaaaagg tctatataca gctttgaatg
     2761 cggttgaaaa gggcagacag aagagtccca gaagtttatg tatccagacc cagacatctc
     2821 cagatgtgct ctcctcagaa aaaacacttg agttggctca gtataaaaca aaatgtgaaa
     2881 accaaagtgg atttatcctg cagctcaagc agcttctttc ccgtggtaat accaagtttg
     2941 aagcattaac agttgtgatt caacacctcc tgtctgagcg ggaggaagca ttgaaacaac
     3001 acaaaaccct atctcaagaa cttgttaacc tccggggaga gctagtcact gcttcaacca
     3061 cctgtgagaa gttagaaaaa gccaggaatg agttgcaaat aacttatgaa ggatttgtcc
     3121 agaagctaaa ccagcagcac cagactgatc taacagagct ggagaatcgg cttaaagaat
     3181 tttacactgg ggagtgtgaa aagcttcaga atatctacat cgaagaagca gagaagtaca
     3241 aaactcagtt acaggagcag tttgacaact taagtgctgc ccatgaaacc tcaaagttgg
     3301 aaattgaagc aagccactca gagaaaatag acttgctaaa gaaggcctat gaaacctccc
     3361 tttcagagat caagaaaagc catgaaatgg aaaagaaatc acttgaggat ttgctttacg
     3421 agaagcagga gtcactagag aaacaaatca atggtttgaa gagtgaaaat gacactttaa
     3481 atgaaaagtt gaaatcagaa gaacaaaaga gaatatcaag agagaaagca aatttaaaaa
     3541 accctcagat catgtatctg gaacaagagt tagaaagcct gaaggctgtt ttagacatca
     3601 agaatgagaa gctgcaccaa caggacatca agttaatgaa aatggagaaa ctggtggaca
     3661 acaacacagc actggtggac aaactgaagc gattccagca ggagaatgaa gaattaaaag
     3721 ctcggatgga caagcacatg gcaatttcaa ggcaactttc cacggagcag gctgtcttgc
     3781 aggagtcgct ggagaaggag tccaaagtca acaagcgcct ctccatggag aacgaggagc
     3841 tgctgtggaa gctgcacaat ggggacctgt gcagccccaa gaggtccccc acgtcacctg
     3901 ccatcccctt ccagtcgccg cggaactccg gctccttccc cagccccagc atctcgnncc
     3961 cagatgacct tcctgggagc tggagacaga ctgcgtttct gcagtactga cccacccaca
     4021 atcgtggggg gtgggggggg cggggctgga gccaccttca ctgacatgca cagcctgtcc
     4081 tagaactgga aagtcatggg ccgaaccggc cccttgcaga caagaccaga actctggagg
     4141 aagacgtccg actcgtccag gagactcctc cccaaacgat gctgttggaa tggatctaca
     4201 tggacgctgt tgcacaaagc acttacagaa cgagaagatc ttgttcgttg cctttttcac
     4261 ctacgcataa aggggaaaac tctcaggggc ctgttaagat aaagatttat ataacctttg
     4321 taacgttctt caccacagac accttcttgt gatttacatt ttggtctgac tggggatgtg
     4381 tgaatgaagt ggatgtaacc gagtgtcacg tgtctgatgc tgcctccttt gctgagtctg
     4441 tctggagatg tgctaatcaa atagtcagtg tatgcatctc tgcaaaagcc atagaagaaa
     4501 gagcagtagt tgctagaact agaattcttt accaccaacc ccgctcagcc ctttgccatg
     4561 gtgggggaga gggagagaca gaaagagctc tgacttgccc acgtctgttc atgctttgca
     4621 tcctttcgga gtaacttctt ggcagccttt cagtgttcag ccatgtcagt tgaaactagc
     4681 tagatttttt aaacttaccc atgtggacgt aaaatactac aatccatttt cttaggctat
     4741 gagcaaatgt agaaccctaa ttttactttt taaaaaacgt gtataaagaa agggcagtac
     4801 ccatggattg ctttctgcct tatttttatc ttgatctgag ctatcctcag tgatttcaac
     4861 tggctgcttc tctcccacta tccccattcc cccctctcct ttctccccca tccagagcca
     4921 caaaagcaaa ccttctacct ccttcctact ttttctctgg gacaaggaat atgcttttcc
     4981 agagccagct catcttcaag gtgctgaacc actttccaaa taaaccaagg cctggatccg
     5041 acagtataaa tttggggaaa tcctagagag attaaagaat gaaaaggagt cattggctcg
     5101 cagaactaag aaagatagga ctcagtgctt atggatgaaa catgagcacc ttgatgatag
     5161 aacaaaacag tctctggaga taatgctaaa cttccacgta cctttgagga gtccttctgt
     5221 ccttgggaag gtagcagaat gaccagctga tgagagaaga atgtggcttg tacagttctt
     5281 ctccaatctg catttcaatt tcttttcaaa acttcactta ttacctcccc cacttctgag
     5341 actttggggg aggtggaagg aagaactgtg gcttttttct ttctccctgc atgtgtcaag
     5401 cttgtgctgt atttactaat cagcattact gatgttcgat ggctgtacag ataagcgcta
     5461 tagtaagaac agattcaggc tactagaggt ggacgtttga gttgacattt acatatacac
     5521 tacaaagcag attgatagtc atgatgcatg tttttttgtt tgtttttgtt ttactagtga
     5581 ttgtgtctga tgtttttaac ctccaaccgt tgattatgtg tgtaaccttc catgtttgtt
     5641 tctgataaat gggaacgtag gttcactgcc acctcctgga atctctctgc tcacctttcc
     5701 aagttgttct caatgtcctt agccaaagtt gggtttgcca tcctttccct gcacatggtc
     5761 aatctcgtgc tgttccctgc tgtgctccat gccatttagg tgtctgggga aatgatcctt
     5821 acacagttaa tataaaatgt cttcagagaa tgggagacaa caggagagaa gataggaaac
     5881 aaaacatgga actgtaaaat tatcttcaaa ccaaatgtta tcacttagga tgcaaaatgt
     5941 tggcacgtca taaaaatacg gatgtgtaaa caactgtagt tgtgctcagt ttgtagtgat
     6001 ggaaagtatt ttactttgat caaataaata atgctggaat at
//
LOCUS       XR_004347881             472 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746815
            (LOC116746815), transcript variant X1, ncRNA.
ACCESSION   XR_004347881
VERSION     XR_004347881.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..472
                     /gene="LOC116746815"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746815"
     ncRNA           1..472
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746815"
                     /product="uncharacterized LOC116746815, transcript variant
                     X1"
                     /db_xref="GeneID:116746815"
ORIGIN      
        1 aacccgggtc ccctgcagtg ggagcacaga gtcttaacaa ttggaccgcc agcttccgga
       61 gtgtgggcag gagcgattcc ctgagtcttt ttcaacgatg acttctgtgt tttcctaaga
      121 ggaggactct gtttgaggtg gtgagcagag tcagagctta aagcgattct tccttgaaga
      181 gcagggtact gcccacacct gctcaacgct ctgcttctcc atccatttac atcaggagga
      241 atcgggtcct atgaagagat gaagctgctc atccttcaga caccgcatat agaagcaact
      301 aataataata ataatgctta cctcctgttt acaggaccct tttccatata atttactcca
      361 agagaccagg atgctccaag acagagaaag aataagatta atttctaggg aaggaagttc
      421 tgtaactgaa tccaaattat aatttgaaaa taataaacaa atccaaatgg aa
//
LOCUS       XR_004347882             511 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746815
            (LOC116746815), transcript variant X2, ncRNA.
ACCESSION   XR_004347882
VERSION     XR_004347882.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..511
                     /gene="LOC116746815"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746815"
     ncRNA           1..511
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746815"
                     /product="uncharacterized LOC116746815, transcript variant
                     X2"
                     /db_xref="GeneID:116746815"
ORIGIN      
        1 aacccgggtc ccctgcagtg ggagcacaga gtcttaacaa ttggaccgcc agcttccgga
       61 gtgtgggcag gagcgattcc ctgagtcttt ttcaacgatg acttctgtgt tttcctaaga
      121 ggaggactct gtttgaggtg gtgagcagag tcagagctta aagcgattct tccttgaaga
      181 gcagggtact gcccacacct gctcaacgct ctgcttctcc atccatttac atcaggagga
      241 atcgggtcct atgaagacac agagaatctt tcttacaggg ctctgttttg ttccaggatg
      301 aagctgctca tccttcagac accgcatata gaagcaacta ataataataa taatgcttac
      361 ctcctgttta caggaccctt ttccatataa tttactccaa gagaccagga tgctccaaga
      421 cagagaaaga ataagattaa tttctaggga aggaagttct gtaactgaat ccaaattata
      481 atttgaaaat aataaacaaa tccaaatgga a
//
LOCUS       XM_032618540            2792 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus plasminogen activator, tissue type
            (PLAT), transcript variant X1, mRNA.
ACCESSION   XM_032618540
VERSION     XM_032618540.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2792
                     /gene="PLAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 5 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746816"
     CDS             412..2109
                     /gene="PLAT"
                     /codon_start=1
                     /product="tissue-type plasminogen activator"
                     /protein_id="XP_032474431.1"
                     /db_xref="GeneID:116746816"
                     /translation="MNAVKREILCVLLLCGAVFSSPSQEIHRRLRRGARSHRGGVTCR
                     DEKTQMTYLQHESWLRPLLRGNRVEHCWCNGGRAQCHSVPVNSCSKPRCFNRGTCWQA
                     LYSSEFVCQCPEGFIGKRCEIDASATCYKDQGITYRGTWSTAESGAECVNWNSSSLAM
                     KPYSGRRPDAIRLGLGNHNYCRNPDQDLKPWCYVFKAGKYISEFCSTPACGKEKDGDC
                     YQGKGLAYRGTHSLTTSGASCLPWSSMILMGKIYTAWKSNAQALGLGKHNHCRNPDGD
                     AQPWCHVLKDRQLTWEYCDVPQCVTCGLRQYKQPQLRIKGGLFADITSHPWQAAIFTR
                     NRRSPGERFLCGGVLISSCWVLSAAHCFQERYPPNHLKVVLGRTYRLVPGKEEQTFEV
                     EKYIVHKEFDDDTYNNDIALLQLKSDSLTCALESNAVRTVCLPDAGLQLPDWTECELS
                     GYGKHEASSPFYSERLKEAHVRLYPSSRCTSQYLFNRTVTNNMLCAGDTRSGGDQPNL
                     HDACQGDSGGPLVCMKDDHMILVGIISWGLGCGQKGVPGVYTKVTNYLDWVRDNTRP"
     misc_feature    538..666
                     /gene="PLAT"
                     /note="Fibronectin type 1 domain; Region: FN1; smart00058"
                     /db_xref="CDD:214494"
     misc_feature    673..771
                     /gene="PLAT"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    787..1041
                     /gene="PLAT"
                     /note="Kringle domain; Kringle domains are believed to
                     play a role in binding mediators, such as peptides, other
                     proteins, membranes, or phospholipids. They are autonomous
                     structural domains, found in a varying number of copies,
                     in blood clotting and...; Region: KR; cd00108"
                     /db_xref="CDD:238056"
     misc_feature    823..825
                     /gene="PLAT"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     misc_feature    order(868..870,898..900,982..984,988..990,1015..1017)
                     /gene="PLAT"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:238056"
     misc_feature    1063..1308
                     /gene="PLAT"
                     /note="Kringle domain; Region: Kringle; pfam00051"
                     /db_xref="CDD:395005"
     misc_feature    1090..1092
                     /gene="PLAT"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     misc_feature    order(1135..1137,1165..1167,1249..1251,1255..1257,
                     1282..1284)
                     /gene="PLAT"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:238056"
     misc_feature    1357..2097
                     /gene="PLAT"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...; Region:
                     Tryp_SPc; cd00190"
                     /db_xref="CDD:238113"
     misc_feature    order(1489..1491,1636..1638,1957..1959)
                     /gene="PLAT"
                     /note="active site"
                     /db_xref="CDD:238113"
     misc_feature    order(1939..1941,2014..2016,2020..2022)
                     /gene="PLAT"
                     /note="substrate binding sites [chemical binding]; other
                     site"
                     /db_xref="CDD:238113"
ORIGIN      
        1 tgcgcagcca cgtttaggca gagcgtcggc tcagcgcccc aacctgtatc cacagcccag
       61 ctggagagct cgggagccga aaagacctca gcgaccacgg attcacttta cagaatgatt
      121 tcccccaaga tgacagacct ggggagtggc tgattccagg ctgcggcact ttccactgca
      181 ggcccgcccc ggtttggctc ctgtggcttt gtccgctggg catcctcccg ccacagagaa
      241 gcccgcccac ccggagccac tgaccccacc ccctgccttg aaatttaaag gaggcgggag
      301 ctgtgcaggg gcagcagagc cgaggtcctg cagagcctgg ggctgaagag gacgctctcg
      361 gaggagggga gaaggctcgc ggcggtgaat ttaagggaca ccgaggaaac gatgaacgca
      421 gtgaagagag agatcttgtg tgtgctgctg ctctgtggag ctgtcttcag ttcacccagc
      481 caggaaatcc acaggcgact caggagagga gccagatcgc acagaggtgg agtgacctgc
      541 agagacgaga agacacagat gacgtacctg caacatgagt cctggctgcg gcccctgctc
      601 aggggcaaca gggtggagca ctgctggtgc aacggtggcc gggcccagtg ccactcggtg
      661 cccgtcaaca gttgcagcaa acctcggtgc ttcaataggg ggacatgttg gcaggccctc
      721 tattcctcag agtttgtctg ccagtgccct gaagggttca ttgggaaacg ctgtgaaata
      781 gatgccagtg ccacatgcta caaggaccag ggcatcacct acagaggcac gtggagcaca
      841 gcggagagcg gggccgagtg cgtcaactgg aacagcagca gcctggccat gaagccctac
      901 agtgggcgca ggcctgatgc catcaggctg ggcctcggga atcacaacta ctgcagaaac
      961 ccagaccaag acttaaagcc ctggtgctac gtcttcaagg cagggaagta catctccgag
     1021 ttctgcagca cgccagcctg tggcaaggaa aaagatgggg actgctacca ggggaaaggg
     1081 ctggcgtacc gcggcaccca cagcctcacc acgtctgggg cctcctgcct cccgtggagt
     1141 tccatgatcc tgatgggcaa gatttacacc gcctggaaga gcaacgcgca ggccctgggc
     1201 ctaggcaagc acaatcactg ccggaaccca gatggggacg cccagccttg gtgccatgtt
     1261 ctgaaggatc gccagctgac gtgggagtat tgcgacgtgc cccagtgtgt cacctgcggc
     1321 ctgagacagt acaagcagcc ccagctccgc atcaaaggag gcctcttcgc ggacatcacc
     1381 tcccacccgt ggcaggccgc catcttcacc aggaacagga ggtccccagg agagcggttt
     1441 ctgtgtgggg gggtcctgat cagctcctgt tgggtgctgt cagccgccca ctgcttccag
     1501 gagaggtatc ctcccaacca tctcaaggtg gtcctgggca ggacgtaccg gctggtccct
     1561 ggaaaggagg agcagacgtt tgaagtagaa aaatacatcg tccataagga attcgatgat
     1621 gacacttaca acaatgacat agcgctgctg cagctgaaat cggactcact gacctgcgcc
     1681 ctggagagca acgccgtccg caccgtctgc ctcccagacg ccggcctgca gctgccggac
     1741 tggacagagt gcgagctgtc tggctacggg aagcacgagg cctcttctcc attctattcc
     1801 gagcgcctga aggaggccca tgtcaggctg tacccatcca gccgctgcac ttcccagtat
     1861 ttgtttaaca ggactgtcac caacaacatg ctgtgtgccg gagacacacg aagcggtggg
     1921 gaccaaccaa acctgcatga cgcctgccag ggtgactcgg gcggccccct ggtgtgtatg
     1981 aaggacgacc acatgatctt ggtcgggatc atcagctggg gcctcggctg tggccagaag
     2041 ggcgttccgg gcgtgtacac caaggttact aattacctag actgggttcg ggacaacaca
     2101 cgaccgtgac caggggcacc ggttccctgc atcacggaga ccctgtttcc ttcacccccg
     2161 aggatgcact gcggcggggg cctcttcacg cagcacaagt cggggaggat ggacttccat
     2221 aggtactttc cgttttggaa gttttcgggg cttcaggtct gaaacatact ctgtcagatg
     2281 ggaagagggg taaacgccag cccctcctgg aatcccagtc cccggggcag aagcccacct
     2341 cctctgtcca cgtgagcagc tttagaaacg ggaccgcaaa ggtgaaagca tgtttcagta
     2401 gacaaagata actggatcct tcaggaaaga agggttagaa atattctatt aggaatagaa
     2461 tgtctatttc tagtcacagg gaagcccagc aggagcctcc taataaggga cgggctggct
     2521 ggccagatta tgtgcctcaa atccagcctt cacatcaagt gtcggggttt ccctttctcc
     2581 ggctatacct cttggaagga atcctgttgt gtagagtgta attctttttt ctttataact
     2641 ttcatcatag gacaggagac atgtatcatt ttaataacta ataaactagg ctctagcgta
     2701 tttatatcag ttcatttttg tttatactgt tggtacacct gtatgatact gtactggaat
     2761 aataaattga tatatttttc acatattttc ta
//
LOCUS       XM_032618541            2595 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus plasminogen activator, tissue type
            (PLAT), transcript variant X2, mRNA.
ACCESSION   XM_032618541
VERSION     XM_032618541.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2595
                     /gene="PLAT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746816"
     CDS             215..1912
                     /gene="PLAT"
                     /codon_start=1
                     /product="tissue-type plasminogen activator"
                     /protein_id="XP_032474432.1"
                     /db_xref="GeneID:116746816"
                     /translation="MNAVKREILCVLLLCGAVFSSPSQEIHRRLRRGARSHRGGVTCR
                     DEKTQMTYLQHESWLRPLLRGNRVEHCWCNGGRAQCHSVPVNSCSKPRCFNRGTCWQA
                     LYSSEFVCQCPEGFIGKRCEIDASATCYKDQGITYRGTWSTAESGAECVNWNSSSLAM
                     KPYSGRRPDAIRLGLGNHNYCRNPDQDLKPWCYVFKAGKYISEFCSTPACGKEKDGDC
                     YQGKGLAYRGTHSLTTSGASCLPWSSMILMGKIYTAWKSNAQALGLGKHNHCRNPDGD
                     AQPWCHVLKDRQLTWEYCDVPQCVTCGLRQYKQPQLRIKGGLFADITSHPWQAAIFTR
                     NRRSPGERFLCGGVLISSCWVLSAAHCFQERYPPNHLKVVLGRTYRLVPGKEEQTFEV
                     EKYIVHKEFDDDTYNNDIALLQLKSDSLTCALESNAVRTVCLPDAGLQLPDWTECELS
                     GYGKHEASSPFYSERLKEAHVRLYPSSRCTSQYLFNRTVTNNMLCAGDTRSGGDQPNL
                     HDACQGDSGGPLVCMKDDHMILVGIISWGLGCGQKGVPGVYTKVTNYLDWVRDNTRP"
     misc_feature    341..469
                     /gene="PLAT"
                     /note="Fibronectin type 1 domain; Region: FN1; smart00058"
                     /db_xref="CDD:214494"
     misc_feature    476..574
                     /gene="PLAT"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    590..844
                     /gene="PLAT"
                     /note="Kringle domain; Kringle domains are believed to
                     play a role in binding mediators, such as peptides, other
                     proteins, membranes, or phospholipids. They are autonomous
                     structural domains, found in a varying number of copies,
                     in blood clotting and...; Region: KR; cd00108"
                     /db_xref="CDD:238056"
     misc_feature    626..628
                     /gene="PLAT"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     misc_feature    order(671..673,701..703,785..787,791..793,818..820)
                     /gene="PLAT"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:238056"
     misc_feature    866..1111
                     /gene="PLAT"
                     /note="Kringle domain; Region: Kringle; pfam00051"
                     /db_xref="CDD:395005"
     misc_feature    893..895
                     /gene="PLAT"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     misc_feature    order(938..940,968..970,1052..1054,1058..1060,1085..1087)
                     /gene="PLAT"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:238056"
     misc_feature    1160..1900
                     /gene="PLAT"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...; Region:
                     Tryp_SPc; cd00190"
                     /db_xref="CDD:238113"
     misc_feature    order(1292..1294,1439..1441,1760..1762)
                     /gene="PLAT"
                     /note="active site"
                     /db_xref="CDD:238113"
     misc_feature    order(1742..1744,1817..1819,1823..1825)
                     /gene="PLAT"
                     /note="substrate binding sites [chemical binding]; other
                     site"
                     /db_xref="CDD:238113"
ORIGIN      
        1 cagcgaccac ggattcactt tacagaatga tttcccccaa gatgacagac ctggggagtg
       61 gctgattcca ggctgcggca ctttccactg caggaggcgg gagctgtgca ggggcagcag
      121 agccgaggtc ctgcagagcc tggggctgaa gaggacgctc tcggaggagg ggagaaggct
      181 cgcggcggtg aatttaaggg acaccgagga aacgatgaac gcagtgaaga gagagatctt
      241 gtgtgtgctg ctgctctgtg gagctgtctt cagttcaccc agccaggaaa tccacaggcg
      301 actcaggaga ggagccagat cgcacagagg tggagtgacc tgcagagacg agaagacaca
      361 gatgacgtac ctgcaacatg agtcctggct gcggcccctg ctcaggggca acagggtgga
      421 gcactgctgg tgcaacggtg gccgggccca gtgccactcg gtgcccgtca acagttgcag
      481 caaacctcgg tgcttcaata gggggacatg ttggcaggcc ctctattcct cagagtttgt
      541 ctgccagtgc cctgaagggt tcattgggaa acgctgtgaa atagatgcca gtgccacatg
      601 ctacaaggac cagggcatca cctacagagg cacgtggagc acagcggaga gcggggccga
      661 gtgcgtcaac tggaacagca gcagcctggc catgaagccc tacagtgggc gcaggcctga
      721 tgccatcagg ctgggcctcg ggaatcacaa ctactgcaga aacccagacc aagacttaaa
      781 gccctggtgc tacgtcttca aggcagggaa gtacatctcc gagttctgca gcacgccagc
      841 ctgtggcaag gaaaaagatg gggactgcta ccaggggaaa gggctggcgt accgcggcac
      901 ccacagcctc accacgtctg gggcctcctg cctcccgtgg agttccatga tcctgatggg
      961 caagatttac accgcctgga agagcaacgc gcaggccctg ggcctaggca agcacaatca
     1021 ctgccggaac ccagatgggg acgcccagcc ttggtgccat gttctgaagg atcgccagct
     1081 gacgtgggag tattgcgacg tgccccagtg tgtcacctgc ggcctgagac agtacaagca
     1141 gccccagctc cgcatcaaag gaggcctctt cgcggacatc acctcccacc cgtggcaggc
     1201 cgccatcttc accaggaaca ggaggtcccc aggagagcgg tttctgtgtg ggggggtcct
     1261 gatcagctcc tgttgggtgc tgtcagccgc ccactgcttc caggagaggt atcctcccaa
     1321 ccatctcaag gtggtcctgg gcaggacgta ccggctggtc cctggaaagg aggagcagac
     1381 gtttgaagta gaaaaataca tcgtccataa ggaattcgat gatgacactt acaacaatga
     1441 catagcgctg ctgcagctga aatcggactc actgacctgc gccctggaga gcaacgccgt
     1501 ccgcaccgtc tgcctcccag acgccggcct gcagctgccg gactggacag agtgcgagct
     1561 gtctggctac gggaagcacg aggcctcttc tccattctat tccgagcgcc tgaaggaggc
     1621 ccatgtcagg ctgtacccat ccagccgctg cacttcccag tatttgttta acaggactgt
     1681 caccaacaac atgctgtgtg ccggagacac acgaagcggt ggggaccaac caaacctgca
     1741 tgacgcctgc cagggtgact cgggcggccc cctggtgtgt atgaaggacg accacatgat
     1801 cttggtcggg atcatcagct ggggcctcgg ctgtggccag aagggcgttc cgggcgtgta
     1861 caccaaggtt actaattacc tagactgggt tcgggacaac acacgaccgt gaccaggggc
     1921 accggttccc tgcatcacgg agaccctgtt tccttcaccc ccgaggatgc actgcggcgg
     1981 gggcctcttc acgcagcaca agtcggggag gatggacttc cataggtact ttccgttttg
     2041 gaagttttcg gggcttcagg tctgaaacat actctgtcag atgggaagag gggtaaacgc
     2101 cagcccctcc tggaatccca gtccccgggg cagaagccca cctcctctgt ccacgtgagc
     2161 agctttagaa acgggaccgc aaaggtgaaa gcatgtttca gtagacaaag ataactggat
     2221 ccttcaggaa agaagggtta gaaatattct attaggaata gaatgtctat ttctagtcac
     2281 agggaagccc agcaggagcc tcctaataag ggacgggctg gctggccaga ttatgtgcct
     2341 caaatccagc cttcacatca agtgtcgggg tttccctttc tccggctata cctcttggaa
     2401 ggaatcctgt tgtgtagagt gtaattcttt tttctttata actttcatca taggacagga
     2461 gacatgtatc attttaataa ctaataaact aggctctagc gtatttatat cagttcattt
     2521 ttgtttatac tgttggtaca cctgtatgat actgtactgg aataataaat tgatatattt
     2581 ttcacatatt ttcta
//
LOCUS       XR_004347883            2014 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746817
            (LOC116746817), ncRNA.
ACCESSION   XR_004347883
VERSION     XR_004347883.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2014
                     /gene="LOC116746817"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746817"
     ncRNA           1..2014
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746817"
                     /product="uncharacterized LOC116746817"
                     /db_xref="GeneID:116746817"
ORIGIN      
        1 gacagacagg ccggcctctt tagggcccga ctcaccccaa actgacgcca cccccggcaa
       61 tcttgctcac ttttgggaca atccgtcctt tattccttcc ttgctctcag ccagaagaca
      121 acaaagaccc gattttttgt caccaaagac ccctttcagt tttcaaaaac aatttcagat
      181 tcagtttatt agggggcagt gccaatatta ctttccatat gactgtgtga tctttacatt
      241 caatttccta tgaaaatcag ttattttctt gaaatatata atagaatata attgtgtatt
      301 tctactattt ccttatttta gtttcaatga aatatgaaat acacttagga aaaacaataa
      361 aaaagacccc ttttattgtt tttcctctga tgggcccttg ttttgaagga gtttatctat
      421 caaaacacat ttattaggta atactctaat ttttcatttt aattcatcaa aaatatgcac
      481 gtgcacgcaa ttgcccacca gaatttttga tccacgttaa cattaccaca ctgagatgat
      541 gcatttctgg tcccaaacaa agaaaattga cattttagtc tgtgcagaaa atttgctact
      601 tccattagta ctttggtata atgaaaatag ttgaagtact cccattaata cactttccct
      661 ttttctctct ctctgtttgc aacccagaat gcaaacttaa aacatcttta actgttaatg
      721 aattgaagca gtgacatacg ttcactgcca ataatactgc tgttcctcta gagggccgtc
      781 ggggccagcg tacgtttgca ggaagcacta gtgctatccg actgcggaag cagtgagact
      841 taagctgtga ctcactctgg ggaaacttcc accttaagtg ggtgttgcag agccttccag
      901 cccccaaaga ggtaggtcat gagggaggag ggatgatctg ggacctgcag cggggcctgc
      961 agctctctag atcagcgtca agacaattgg gccgtgagca cgttttattc ttgggatcct
     1021 agtgggaacg ttccttgggt ttctagtctc aactctagac acggcctcac agagatggtc
     1081 ttcccacggc acttccgtga agcaacccag gttagtcatc cctgagttac caaccgaaga
     1141 aacagagaca cagagaagct agttaacaaa ggctcccagc agcgagcgac tcccaggcat
     1201 cctgacccct tgaggacctg ttcctgtccc ctcagagcct gtgtgagtgg cgagacaggg
     1261 caaaagcatc ttagcagagt ctcaccttca cggattttga tgacatctca cctccacctc
     1321 tgtgcgatct ggctcctctc ctgagtcgcc tgtggatttc ctgcaaagaa accaggggcg
     1381 gaggaagagt cagcacatgc tgggtgtctt aggaataagg gtggtcaaac cagaagacca
     1441 ccatcaaccc accaatcaga ggccacctgc ccagagtatc cccctcagat aatgggccta
     1501 ggtggaatgt ccatcacctg ccttcctgtc taattctttc cccccttcta gactagtcct
     1561 gtccaaaagg actttctgaa tgatggaaat gtttaacatc caggccatgc gatgcagtag
     1621 ccactggtca catgtgacga ctgagcactt caaatgtggt gtgactgaag tgaattttaa
     1681 attttattta actttaatta attttaaatt aaaataggca catgtgggtt agtggggttg
     1741 catgcaccac cccggcccct gcaatcccat ctcctccaaa tagctgcccc aactctccct
     1801 tctctaaaat cctgctgtgc gggcatcgct cacgtggcct gaatgatgcc ctgagctgcc
     1861 aggcatctgc agagagcacg tgtgttgtga agcttccatc ccaagtagat agtacacagt
     1921 acacgggcag ctcgcctgct tccacggctc acagcgcctg tactgtcttt tataaatact
     1981 ttatggattc attcagacac atcctttaaa aaca
//
LOCUS       XR_004347884             580 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746818
            (LOC116746818), ncRNA.
ACCESSION   XR_004347884
VERSION     XR_004347884.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..580
                     /gene="LOC116746818"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746818"
     ncRNA           1..580
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746818"
                     /product="uncharacterized LOC116746818"
                     /db_xref="GeneID:116746818"
ORIGIN      
        1 cccccccaca cagaaaccgc tctcctgggg acctcctgtt cctggtgaag atggcggcct
       61 gccacgggtg ggaggtgatg tccgcgaaga ggcctccttt gatgcggagc tggggctgct
      121 tgtactgtct caggccgcag ccacttcctg gcttaagaaa taaggaggca ttgcagcttc
      181 ttcctgggga atgtctaccc cactgctctc ccatcgactc agccgtacct atccttccag
      241 gcccatggga cggcctgccc cctcacgaag ttttcctaat actgccagcc cactggtact
      301 gcccgctgag aatgcgccat gcgtgacctt ggtcctgtgc taggagaaga ctcttaggat
      361 ggaacaaagg ggccacatga ggacagcaca gatgaggaca gaccctctaa catgggattt
      421 gggtcaagaa accggaggac gttccttttc acgacaggtg caaatgaata ggttgggctg
      481 ggtcacatcc acggttccct cccacccact gggtctttca tgtaactttc agcatcagcc
      541 cctcccatcc cgctccaacc ccgccctccg cgcagacacc
//
LOCUS       XM_032618542            1248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ZFP42 zinc finger protein (ZFP42), mRNA.
ACCESSION   XM_032618542
VERSION     XM_032618542.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1248
                     /gene="ZFP42"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 91% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746819"
     CDS             1..903
                     /gene="ZFP42"
                     /codon_start=1
                     /product="zinc finger protein 42 homolog"
                     /protein_id="XP_032474433.1"
                     /db_xref="GeneID:116746819"
                     /translation="MDQKLKKREKTLGQKGLGRRAVSGDKSPPAPQKPPDTTWTLCDE
                     EVCYETSFRVVEEDSFSDCYIECIIRGEFSEPITEEDSLLKSFDCLKQGSEQELSQQV
                     LTASSLLERSLEYMKKGAKQELPQQFGGENSLLESSEYMTGKKLPPGEIPSIDFSDPK
                     QLTECTKMKPSTNKEYDAPEKIVCPESGCIREFKNRASLRKHLRVHSPRDHVCAECGK
                     AFKESAKLKRHFLVHTGEKPFPCTFEGCGKRFSLSFNLRTHVRIHTGEKPFVCPFQGC
                     LKKFIQSNNMKAHLLTHAKAEMSQ"
     misc_feature    <442..885
                     /gene="ZFP42"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    550..618
                     /gene="ZFP42"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(550..552,565..567,604..606,616..618)
                     /gene="ZFP42"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    637..699
                     /gene="ZFP42"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(637..639,646..648,685..687,697..699)
                     /gene="ZFP42"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(652..654,658..660,664..666,670..675,682..687,
                     694..696,742..744,748..750,760..765,772..777,784..786,
                     832..834,838..840,844..846,850..855,862..867,874..876)
                     /gene="ZFP42"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    721..789
                     /gene="ZFP42"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    811..879
                     /gene="ZFP42"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 atggaccaga aactgaagaa aagggaaaag acacttggcc agaaaggcct tggtagaaga
       61 gccgtcagtg gggacaagtc accgccagcc ccgcagaaac ctcctgacac gacgtggacc
      121 ttatgtgatg aggaagtgtg ctatgagact agctttcggg ttgttgaaga ggattccttc
      181 tctgactgtt acatagaatg cataataaga ggtgagtttt ctgaacctat cacggaagag
      241 gactcacttc ttaagtcctt tgactgtctg aaacaaggat cagaacaaga gctttctcaa
      301 caggttctta cggcaagctc acttcttgaa cgttccttgg aatacatgaa aaagggggca
      361 aaacaagaac ttcctcaaca gtttggtgga gagaattcac ttcttgagtc ttctgagtac
      421 atgacaggca agaagcttcc tcctggagaa atacccagca ttgacttttc agatcctaaa
      481 cagctcacag aatgtactaa aatgaagcca agtacaaata aagaatatga tgctccagaa
      541 aaaattgttt gtcctgagag tggatgcata agagagttca agaatagagc atccctgaga
      601 aagcatctcc gagttcatag tccccgagat cacgtatgtg cagaatgtgg gaaagccttc
      661 aaggagagcg caaaactaaa aagacatttt ctggttcata ctggagagaa gccatttccg
      721 tgtactttcg aagggtgcgg aaaacgtttt tccctgtcct tcaatttgcg tacacatgtg
      781 cgcatccaca ctggggagaa accttttgta tgtccctttc aaggctgtct caagaagttt
      841 attcagtcaa ataacatgaa agcgcacctc ttaactcatg caaaggccga aatgagtcaa
      901 tgaaagaaga tggaaaataa tcctcaaaca ggataagcgt attaacaaaa gaatggcaac
      961 aaatgtgcct cattgattat tgtttcagga aacaattttt aaatcaatat tgccacccta
     1021 caaggtatat tttttttaat gttactaaga tagatgctcc tatagtctgt gatgttattt
     1081 tagaactttg tgtaaaatta tagtgcagtt ccaataataa tgtcagtaat gaacttactt
     1141 caaaagcata atccttaata tatgacaagt tggatttttg gatatgggac ttaatatctc
     1201 atactattat actataagta cgaaattaac tttgctttta agtttgta
//
LOCUS       XM_032618543            3455 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus purine rich element binding protein G
            (PURG), transcript variant X1, mRNA.
ACCESSION   XM_032618543
VERSION     XM_032618543.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3455
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3455
                     /gene="PURG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746820"
     CDS             251..1303
                     /gene="PURG"
                     /codon_start=1
                     /product="purine-rich element-binding protein gamma
                     isoform X1"
                     /protein_id="XP_032474434.1"
                     /db_xref="GeneID:116746820"
                     /translation="MERARRRGGGGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPY
                     YAASATPNQAGGAAEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDN
                     IRKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHGKEQSSRRRQKHAAPSP
                     PVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMIRGTGMIGYFGHT
                     LGQEQTIVLPAQGMIEFRDALVQLIEDYGEGDIEERRGGDDDPVELPEGTSFRVDNKR
                     FYFDVGSNKYGIFLKVSEVRPPYRNTITVPFKAWTRFGENFIKYEEEMRKIFNSHKEK
                     RMDGRRASGEEQECLD"
     misc_feature    428..1222
                     /gene="PURG"
                     /note="PurA ssDNA and RNA-binding protein; Region: PurA;
                     pfam04845"
                     /db_xref="CDD:282672"
ORIGIN      
        1 ccggtgcccg aacagaggcg gcggcccccg cagcagccgc aggaggggcg gcggcggtgg
       61 gcgccgcagg cgatgcccct gcccggctgc tccggcgtgg ggcagtgcga gcggcggcgg
      121 gggagcaggc agggggcggc ggctgcggcg gctgcaacag aggggccgag agctggaggc
      181 ggcggcggtg gcggcggcgg cctcgaagga catcggcgga ggcggtgatg gcagcagtgg
      241 tgatctgaag atggaaagag ccaggcgaag gggaggcggc ggcggcggcg gcggccgtgg
      301 ccgcggcggc aagaatgtag ggggctctgg cctcagcaag agtagactct atccccaggc
      361 ccagcactcc cactacccct actacgcggc ttcagccacc cctaaccaag ctgggggcgc
      421 agccgaaatc caggagctgg cctccaaaag ggtggacatc cagaaaaaga ggttttacct
      481 agatgtgaag caaagctccc ggggccggtt cctaaagata gctgaagtct ggatagggag
      541 aggccggcaa gacaatatca gaaagagtaa actgaccctc tccctgtctg tggccgcgga
      601 gctgaaggac tgtctagggg acttcatcga gcactatgcc cacctgggcc tgaaaggcca
      661 ccgacaagag catggtcacg gcaaagagca aagctccagg aggagacaga agcacgcagc
      721 accctcccca ccagtctctg tggggtccga agagcaccct cacagtgtcc tcaaaacaga
      781 ctacatagag agggacaata ggaaatacta tctagaccta aaggaaaatc aacggggtcg
      841 cttcctaagg ataagacaaa ccatgatccg gggaactggc atgataggtt attttggcca
      901 cactttgggc caagagcaga ctatcgtcct cccagcacaa gggatgattg agtttcggga
      961 tgccttggtt cagctcattg aagactatgg cgaaggggac atagaagaac gcagaggtgg
     1021 agacgatgac ccagtcgaac tcccagaggg gacttctttc agagtggaca ataaaaggtt
     1081 ctactttgat gtgggctcta ataaatatgg aattttcctg aaggtaagtg aggtgaggcc
     1141 accttaccgt aatactatta ctgttccatt caaagcttgg acaaggtttg gggagaattt
     1201 tatcaagtac gaagaagaga tgaggaaaat tttcaacagc cataaagaaa agaggatgga
     1261 tggcagaagg gccagtggtg aagagcaaga atgcctcgac tagaatgaaa ttgaactcca
     1321 tcaggcaaaa gttaaaatca taaattggct aaaagtactg atccataatc atttgaagaa
     1381 atttttcctc tttttttggc cctttgttat gagtaatacc tctagtagtt atacttcaag
     1441 gagtctgatt ctcatgttat ccataaaaca ctataattct tatgggaatt tcaaccttcc
     1501 cagagctaaa tagtttagct gcttcagctg ctccagacta ttgaagtatg caaatcagca
     1561 cagtgtgaca ttctgacctt ctagatacca taactaagat taacattgca ctatgacata
     1621 agcctaaaaa aagatacata tacctaatat gtaagtgtga atttctattt aacaagttcc
     1681 ccaaaaaaag tattccattc ctacttcatt aaaagctgct aggattacct gtaggacagt
     1741 taccacagaa acagaaactg acttctatta taaatatact tatttacaaa agtacgagta
     1801 gaaatatatt aaatgtccat tggataactg aatattaaac agtaccatta aagaatcgac
     1861 tcttagagtt actatagtat tctataattt caaattttgt ggtgacccta cagtttatac
     1921 ttgccatatc aatgccatga gagagtttta attggttatt ctaagctagt tacaatccca
     1981 tcttcacctc tgattattgt accatatatt attattgact ttccaaagtt tcaggaatta
     2041 cttttatgtc actgttgcgt gggaggcttt gctatggaaa tcttgatatt ttagcttttc
     2101 atgctaattt gaaggttgtg agaggttctt tcccaaaata catcatggac tcaaggtgtt
     2161 atattttatg ctgctgcttt agcactgttt cagaagggtt ggtgcaccag ttacctgata
     2221 taaaaataat ctgtagtaat atattttagt agcacttttg cagttgctgc cctgaagtcc
     2281 atttcaacac ttacagtata aacctgactt ttaaaggtgt tttaattcca gggggaaaaa
     2341 aaaagttttt ttctaaaaag catttagaat aaatatacaa tttcagcctg gaaaaataca
     2401 atttgaagat tggttataaa catatttgaa agaataattc aggcattttt ccaaggtgct
     2461 ctttatgata ctttacacaa ggtttacttt acacaagact cacccactta ctggtattaa
     2521 aaattacttt ccaggaagtg ccacagcaat ttttcaacac ccaagcaatt ttttaaacaa
     2581 gtggatataa tgtatatgtg taccaaccca ccctgtatta actgactgaa attttatctg
     2641 ttgagctgca ttttatctga atgaaattac tgtcttttat cttggcttta ttcacctccc
     2701 acacaatgag tccatataat catgtttaga agccagacac tgatttcagc ccccaaatat
     2761 agctctcatt gatgagagct ggctgcatgg attgagttca gaatgtagct cttcttttat
     2821 atgctataag taattcacaa ttattttaac agttgatttc cctccagagg tttgtcccca
     2881 aatacactta agtaaggtca ctaagaaaac tttatgatat aaattaagaa aattaatttc
     2941 actgatttac gttacttaag aacaagcaat cagtaaccta gacatacata ctggtgttgg
     3001 cttactgatt gtatttccag tttcctcaaa gtataaagga atctccccag ttcattataa
     3061 ttgtgggcca tctggatcac tatggaccag ctgaaggtta gaagatggtg ttaggactag
     3121 agttaatagc tcatggcggg tgttgagact ctaaaagtag caaggatctt taaacagtcc
     3181 tcactgtaaa ataactattc taggcttgat aaaaagtagt tttggggtat gtgaaggagt
     3241 ggtgtacact tgaattactg tactactgat tgctttgctg cccatcttag tgcctattaa
     3301 taataatcaa cctgtcagat tttggcaaac tggagctgtg aatattccag tatttgagtg
     3361 ttcctatcac tattgctgtg actgtatact ctctcttaaa accttccctt ctaaaatatt
     3421 tatatctgtt aaatctaaat aatttccttc ttggt
//
LOCUS       XM_032618544            2064 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus purine rich element binding protein G
            (PURG), transcript variant X2, mRNA.
ACCESSION   XM_032618544
VERSION     XM_032618544.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2064
                     /gene="PURG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746820"
     CDS             290..1267
                     /gene="PURG"
                     /codon_start=1
                     /product="purine-rich element-binding protein gamma
                     isoform X2"
                     /protein_id="XP_032474435.1"
                     /db_xref="GeneID:116746820"
                     /translation="MERARRRGGGGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPY
                     YAASATPNQAGGAAEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDN
                     IRKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHGKEQSSRRRQKHAAPSP
                     PVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMIRGTGMIGYFGHT
                     LGQEQTIVLPAQGMIEFRDALVQLIEDYGEGDIEERRGGDDDPVELPEGTSFRVDNKR
                     FYFDVGSNKYGIFLKLTNYPKSRGNIHPFHCCQIQHKEQPYDTTKTVEE"
     misc_feature    467..1213
                     /gene="PURG"
                     /note="PurA ssDNA and RNA-binding protein; Region: PurA;
                     pfam04845"
                     /db_xref="CDD:282672"
ORIGIN      
        1 gcccccctcc ccgcccccct gtctcccgcg ggccgcgggc cggtgcccga acagaggcgg
       61 cggcccccgc agcagccgca ggaggggcgg cggcggtggg cgccgcaggc gatgcccctg
      121 cccggctgct ccggcgtggg gcagtgcgag cggcggcggg ggagcaggca gggggcggcg
      181 gctgcggcgg ctgcaacaga ggggccgaga gctggaggcg gcggcggtgg cggcggcggc
      241 ctcgaaggac atcggcggag gcggtgatgg cagcagtggt gatctgaaga tggaaagagc
      301 caggcgaagg ggaggcggcg gcggcggcgg cggccgtggc cgcggcggca agaatgtagg
      361 gggctctggc ctcagcaaga gtagactcta tccccaggcc cagcactccc actaccccta
      421 ctacgcggct tcagccaccc ctaaccaagc tgggggcgca gccgaaatcc aggagctggc
      481 ctccaaaagg gtggacatcc agaaaaagag gttttaccta gatgtgaagc aaagctcccg
      541 gggccggttc ctaaagatag ctgaagtctg gatagggaga ggccggcaag acaatatcag
      601 aaagagtaaa ctgaccctct ccctgtctgt ggccgcggag ctgaaggact gtctagggga
      661 cttcatcgag cactatgccc acctgggcct gaaaggccac cgacaagagc atggtcacgg
      721 caaagagcaa agctccagga ggagacagaa gcacgcagca ccctccccac cagtctctgt
      781 ggggtccgaa gagcaccctc acagtgtcct caaaacagac tacatagaga gggacaatag
      841 gaaatactat ctagacctaa aggaaaatca acggggtcgc ttcctaagga taagacaaac
      901 catgatccgg ggaactggca tgataggtta ttttggccac actttgggcc aagagcagac
      961 tatcgtcctc ccagcacaag ggatgattga gtttcgggat gccttggttc agctcattga
     1021 agactatggc gaaggggaca tagaagaacg cagaggtgga gacgatgacc cagtcgaact
     1081 cccagagggg acttctttca gagtggacaa taaaaggttc tactttgatg tgggctctaa
     1141 taaatatgga attttcctga agctcacaaa ttaccctaaa tccagaggga atatccaccc
     1201 ttttcactgt tgtcaaatcc agcataagga acagccctat gacactacaa aaacagttga
     1261 ggaataagga ataagtctct tatgtcacac ttcagaataa aggcattcgg tgaaagaaat
     1321 gaaccgaagt tcatcgtgaa tgcaaggctt ctgttcttga cattcctccg cggaagggaa
     1381 gacaagtgtc aacaccactg gcatcatttt caaaccgatc ttatgtggaa tatcttccac
     1441 cacactggag tacttcttga ctctatcagg ttttttttgt tttgttttgt cctgttttaa
     1501 ctcatcaagc ctttccgttt tcaaaaaacc atttgtcagc attgaggtag aaggacatag
     1561 atttgaaaat actttcttaa gagatcatgt aactatataa ctctgaattt aaaaactgag
     1621 gaggagggat catttcaacc caccgcctct tacaagaaac atgtttttaa atctgtaact
     1681 gctttagtgt taacagggta caaagtgttt tttgtcctgt attgtactta aaaggttctc
     1741 attgattggt gattgtattg tactgtatga aaacaactca taaattgcct tgtattgttt
     1801 ataatagacc ataccacgta ccacttcagt tttcatgttc caaatttttc agtgatgcat
     1861 gttaacagtt aggtcctaaa attctgtggt gctaattctt ccatatccaa tggtgctttc
     1921 gtggatgcta actgcacaca tgctgaacaa agcttgacgt ttaaaacttt cctcccttcc
     1981 tctgtttata taaagtacac agtaaaataa cttgaatttg tctcaaagta tcactgacaa
     2041 tctaataaac tggtttatac gtgt
//
LOCUS       XM_032618545            4155 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus secreted frizzled related protein 1
            (SFRP1), mRNA.
ACCESSION   XM_032618545
VERSION     XM_032618545.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4155
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4155
                     /gene="SFRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 30 long SRA reads, 17 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746821"
     CDS             190..1116
                     /gene="SFRP1"
                     /codon_start=1
                     /product="secreted frizzled-related protein 1"
                     /protein_id="XP_032474436.1"
                     /db_xref="GeneID:116746821"
                     /translation="MGGGRWAAAGALLALAAGLLAAGSASEYDYVSFQSDVGAYQSGR
                     FYTKPPQCVDIPVDLRLCHTVGYKRMVLPNLLEHETMAEVKQQASSWVPLLNKNCHIG
                     TQVFLCSLFAPVCLDRPIYPCRWLCEAVRDSCEPVMQFFGFYWPEMLKCDKFPEGDVC
                     IAMTPPNATEASKPQGTTVCPPCDNELKSEAIIEHLCASEFALRMKIKEVKKENGDKK
                     IVPKKKKPLKLGPIKKKELKKLVLYLKNGADCPCHQLDNLSHHFLIMGRKVKSQYLLT
                     AIHKWDKKNKEFKNFMKKMKNHECPTFQSVFK"
     misc_feature    325..696
                     /gene="SFRP1"
                     /note="Cysteine-rich domain of the secreted
                     frizzled-related protein 1 (SFRP1), a regulator of Wnt
                     activity; Region: CRD_SFRP1; cd07443"
                     /db_xref="CDD:143552"
     misc_feature    order(370..372,376..384,388..396)
                     /gene="SFRP1"
                     /note="putative Wnt binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:143552"
     misc_feature    718..1089
                     /gene="SFRP1"
                     /note="NTR domain, Secreted frizzled-related protein
                     (Sfrp) 1-like subfamily; composed of proteins similar to
                     human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins
                     containing an NTR domain C-terminal to a cysteine-rich
                     Frizzled domain. They show diverse...; Region:
                     NTR_Sfrp1_like; cd03580"
                     /db_xref="CDD:239635"
ORIGIN      
        1 tcgggagccg ggccgcactc gggccgcgcg ctcgcctccc cgcgcgagct ccccagggtc
       61 gccccgccag cgcctggcgc gggtgcggac ggcgcctttt gtgcccgggg gctcctggaa
      121 gttcgcggcg ggacgcgcgc ggggaggcgg ccgaggacgc cccgcgtcgc aggggccggg
      181 gcgccgagca tgggcggcgg gcgctgggcc gcggcgggcg cgctgctggc gctggccgcc
      241 gggctcctgg ccgcgggctc ggccagcgag tacgactacg tgagcttcca gtcggacgtc
      301 ggcgcgtacc agagcgggcg tttctacacc aagccgccgc agtgcgtgga catcccggtg
      361 gacctgcggc tgtgccacac cgtgggctac aagaggatgg tgttgcccaa cctgctggag
      421 cacgagacca tggccgaggt gaagcagcag gccagcagct gggtgcccct gctcaacaag
      481 aactgccaca tcggcaccca ggtcttcctc tgctcgctct tcgcgcccgt ctgcctggac
      541 cggcccatct acccgtgccg ctggctctgc gaggccgtgc gagactcgtg cgagcccgtc
      601 atgcagttct tcggcttcta ctggcccgag atgctcaagt gcgacaagtt ccccgagggc
      661 gacgtctgca tcgccatgac cccgcccaac gccaccgagg cctccaagcc ccaaggcacg
      721 acggtgtgtc ctccctgtga caacgagctg aaatctgaag ccataatcga gcatctctgt
      781 gccagcgagt ttgccctgag gatgaaaatc aaagaagtga aaaaggaaaa tggcgacaag
      841 aagattgttc ccaagaagaa gaagcccctg aagctggggc ccatcaagaa gaaggagttg
      901 aagaagctgg tcctgtacct gaagaatggg gccgactgcc cctgtcacca gctggacaac
      961 ctcagccacc acttcctcat catgggccgc aaggtcaaga gccagtacct gctgacggcc
     1021 atccataagt gggacaagaa aaacaaagaa ttcaaaaact tcatgaagaa gatgaagaat
     1081 cacgaatgtc ccactttcca gtcggtcttt aagtgattct cgtggggtgg gttagggggg
     1141 agcggacacc cctggaccct cagcggttca caccccctgc tccttcgagg tggagggcat
     1201 cgtaatccag ctactttgcc cttgcagcat ttcccagccc tccctccatc cctatgctcc
     1261 agaccccagt atagccgata tttaaagccg catgcccaga tgaggagacc catttagatc
     1321 aggaagcttc tgaagaccta cagtgtggag cagcacgtcc ccaggggaag ggaggtgcag
     1381 catcatcgca gtcagagaca cagtcacgac aaaagaaaac gctgcggtaa agaaaggggg
     1441 tgggcggcaa gggagaggcg gcagcgaacc ttaggttctg ccgctctctg tgtcattaca
     1501 gattgcttat ggatctatca gctaatctac gcctttggaa ctagaaaatt cgaactgttg
     1561 gtaagatgca cggctttcag ttccagagga gtttctcttt ctgtccgtcg tgcacagaaa
     1621 cggacacaca ccacactcag agggtgacag tgtacaggag aaataggaag agcagaggga
     1681 ggggcctgca ttgcttggcc cagtggccac gtgtcagctc cgataggaac cagccagtct
     1741 cagatgccct ggaggtggtt accgtcagcc tcaggtttga tctcacctcc tgacccgtgg
     1801 agggcggcac gggcctgcct tggtgtgaca gaggtgatga ttcgtagact gagaaggcaa
     1861 cggtggtttt caaaaaacag ggttaaagga gaaaaacaga aaaaattgag aacagtcgag
     1921 caagttgcta gtctagggtg aattgtcatt gggtaaagag ctcagtattc taattccctt
     1981 gtttgttcat ttcacattgt tttaaagcga ccaacagacc cacttacttt tcaaggtttt
     2041 aaaaaaaagt ctccacggag catttgaaag gtgtggtaag actggagtct cttggtgcct
     2101 ttgaggcaac tttctagctg agtggctgtc tctctgagca tttccagtgg gaggtggatt
     2161 ctcctggtag tgtagctgtg ggtcctccct cctgaggggt tctggcttgc cctggcccga
     2221 acacaacgct aatcaaaact cacagtacat cccattcctg tctttcctgt gcagaaatgg
     2281 attcctttga acttgattgc ctagagagcc gagaaattca gaatagcctg cctgcctgtc
     2341 ctctgcacta aaaaaaaaaa tgtttgtttg gctttgcttt tttcatttct gcagagggaa
     2401 agctaagcta caagggtccc cgtccaagga gggagtttaa aaggcaaagc agctacggtt
     2461 ttcccccaag ggccccaaga taattctcaa agccattgtg tttaatgagt gatgtacata
     2521 aacccattca cggaagcaac ttgactcctg ttgttcaatg tataggaatt aatttctccc
     2581 tcaagcctga ttcttaattc tctgtaacac ctccaggatt taacgattgt ccctctgggc
     2641 aaatgtttat acccaatcca atgcttcatt ggggctggaa ggcgtcaccc gcatgttctc
     2701 tgcctgacac agaaacagtg gaagattctg ttaactgccc aaaactccag tctgaaagcc
     2761 agcctgccaa cttcagaacg ttcttgaggg ttatcctgat ctaatgaacc cctgacaatt
     2821 agtgacccat catttaatac tttttttttt tggttctctc tgacctttaa tcataaagtg
     2881 ttggggatct taagtgattt gcctgtaatt ttggatgatt ttttaaaaat gtgtatatat
     2941 attagtttat tagagacatt ctactttcct atcgtcaact gaaattcaga gcaatttcat
     3001 gagcgtatgg atctgggtct tagtcttgac tgattaactc aagcgttctg tgctcatatg
     3061 cctctgcttg tttggacaga gtgggtcagg caacaaggcc tctgtccagg gtgagggcct
     3121 tgggaaagac tttgtgtggg ccatagcagt taccccagga aggttataaa tggacaggta
     3181 ggctctctaa atgggaattc tcaggtagga agcagtaaga gagttcaaaa taagttggaa
     3241 atgtgaattg caattgtaga gtccgaccac agagtcccgg gactgagttt cactgtgggc
     3301 ttgggacagc cttgactatt acacatcaac cattgcaggg caaagggagg ctctgggccc
     3361 aaagctgcat ttgatcacaa acctttgttt ttctcagcaa aggatgtaac aaaaacgatg
     3421 tgcagactca ttggctttct cattggtttc caaaagaggt ctgtgattga ttgggtcatt
     3481 attgctagtg caaaggttgt attcgtgaag gtttaaaatc atcattccgg gtggaatcca
     3541 gtgaggtcac gggcagaact cagctaaatc tttgaagaat attagtactt atcttagaag
     3601 atagaaagtg aggtgagaat tccaagaaca ctctattttt agaggatcct gtgtcacact
     3661 tggccttggg tgtcggtgaa ttagcactga gggctcccta aggcacctgg gtctgtaaat
     3721 gacagaaacc ccattgccca aacctagagt ctgtctttct catcagactc cacgtaacta
     3781 agggctttgc tgtaaccccg tgggtgtgct gggctcaggc gttctgtctt aggagagatg
     3841 ctcgtggcgt aacgtgctgg ctctcctgac ctttcaccag cagatgtaca ggacacagac
     3901 gagattcctg tttcctctag ttcctccacg tagcactcct cttatagagt ctaaatctct
     3961 tacaaaagct ttgaatactg tgaaaatgtt ttacattcca tttcatttgt gtgttgtttt
     4021 ttttaactgc attttaccag atgttttgat gttatcactt atgttaatag taattcccgt
     4081 atgtgttcat tttattttca tgccttcctg ccatgtatca atattcactc aactaaaatc
     4141 actcaattaa tcaac
//
LOCUS       XM_032618546            2921 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycoprotein M6A (GPM6A), transcript
            variant X1, mRNA.
ACCESSION   XM_032618546
VERSION     XM_032618546.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2921
                     /gene="GPM6A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 13 long SRA reads, 24
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746822"
     CDS             137..940
                     /gene="GPM6A"
                     /codon_start=1
                     /product="neuronal membrane glycoprotein M6-a isoform X1"
                     /protein_id="XP_032474437.1"
                     /db_xref="GeneID:116746822"
                     /translation="MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV
                     NILQTYFEMARTAGDTLDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDL
                     YGDFKITTCGRCVSAWFIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGA
                     NLCLDLRQFGIVTIGEEKKICTVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMV
                     HYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT"
     misc_feature    146..844
                     /gene="GPM6A"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     Region: Myelin_PLP; pfam01275"
                     /db_xref="CDD:460144"
ORIGIN      
        1 gccggcgagg ctgggagggg cgaggctgtc actcgccgcg gcgcgcggag caggggaggc
       61 gcgcggagcc cttggccccg ggctgcgccg gccgcttgcg ctccggaggg gccgcaggga
      121 aggcggacgc ggcgccatgg ggtgttttga gtgctgtatt aaatgcctgg gaggcattcc
      181 ttatgcctct ctgattgcca ccatcctgct gtacgctgga gttgccctat tctgcggctg
      241 tggtcatgaa gctctttctg gaactgttaa catcctgcaa acctactttg agatggccag
      301 aactgcggga gatacgctgg atgtctttac catgattgac atcttcaagt atgtgatcta
      361 tggcattgct gctgcattct ttgtgtacgg cattctgctg atggtggaag gtttcttcac
      421 gactggggcc atcaaggatc tctacgggga tttcaaaatc accacgtgtg gcagatgcgt
      481 gagtgcctgg tttattatgc tgacatacct tttcatgctg gcctggctgg gagtcacggc
      541 gttcacctcg ctgccagttt acatgtactt caacctgtgg accatctgcc gaaacaccac
      601 cttggtggag ggagcgaatc tctgcctgga ccttcgtcag ttcgggattg tgacaattgg
      661 agaggaaaag aaaatttgca ctgtctcgga gaatttcctg aggatgtgtg aatccactga
      721 gctgaacatg accttccact tgttcatcgt ggcccttgcc ggagctgggg ctgcagtcat
      781 cgctatggtc cactacctta tggttctgtc tgccaactgg gcttatgtga aagatgcctg
      841 ccggatgcag aagtatgagg acatcaagtc gaaggaggaa caggaacttc atgatatcca
      901 ctctactcgc tccaaagagc ggctcaacgc atacacataa acagcgcctt cccgtccttt
      961 ccaccattca aatgcattgg tgattatcta agggccatcc aaccatccaa ccttttgaaa
     1021 aagaaaatga aagtgcttct catcaatgac atggagggtg acttatgaat cacctgaata
     1081 cagttctttg ttgtttagca cttaatttcc taatttgtta aattggtgta atcagagctc
     1141 tcctccaagc tcctatccag cctttttttt tcttttttaa atttctcaaa ctcatttaat
     1201 aattctgtaa gatcaaagag actaacattg tcaaatgcag agatttcttt gatttttaac
     1261 cacttccgtg tgttatacat tatacctttt gcattatttc ttatgttttg aaaagaaaaa
     1321 tagcttttta tactttttag ttttgatttc ggtaactagt ttaactacag gtaaccttca
     1381 aaagggacca ttgtacatga tgaacgatag acagagatga tatcatgatg acccgaaaca
     1441 tgaaaatctt gtctgaagat cagtggccac gttgctatag gccctggtta atgttttcat
     1501 caatctaagg tgcaatttct aaatttgtaa gagtaggttt aaaaaaaaaa agtgcttctt
     1561 atctttgtta acattgtatt ttttcttgat gtacttaaaa ggcagtactc tctgatgact
     1621 catgtttctg ttgtgagcat gtagaaacaa cgctgcttat gcatggctac ttaccttttt
     1681 aagattgtga caccaggctt accttttaaa gtttagtata gagactattt taacggaaat
     1741 aactactgtg gactattggc aaatgatctc tttgtgattt aagcagtggc tggattggaa
     1801 cttttaatat gttaatgtgg gacattaatt acctttatga aggtggtata ttaaaaatga
     1861 gcacactaac ccctctgaag ttgttttacc tactttaaaa aattttaatg gattgcacct
     1921 ctgtaaacta tccctcaaat tgtgtatgat atatttgaaa aggtttccat taatacaata
     1981 gctttgcttg cagccttcca atctatgtcg gtttacctgt agtgtttttt taaaaagtgt
     2041 ggtgagaggc cactatacaa tgtatccttt tgaagtgtag tgatatattt gtgtttttat
     2101 ttccagtaag tcattttaac caaatgttca ttcgtattca tttataagac gtacctatat
     2161 caaaagaata aaaaaaaaaa gcaatcagta ttattggacc aaatttggtg tttgttttaa
     2221 ccttaactct tctttcggtt atttctaatg ctacaagaat gctgtaaagt gtcttttaaa
     2281 atgatatagc ctgacgagac tttgctgtca gtgtaaaaac taggtagtat tgtgcactga
     2341 tttgaccatt gtgaaatctt ttctcagtgt aagtgcattt ctaataaaat ttattgagtg
     2401 aagcaatctt tgtacaatga ctagtcatgc atcatccata attttacaag ttcttgtagt
     2461 aggaaggggg gtattactag gttatctgtg gcatgattat gcattccgta gtattattta
     2521 attaatttgg ggttttgctt cttttttttt tacacttaga ttatcttact ggttcaacat
     2581 ttttctgata catgcagtat tacagatatt cagcaaaagt attaatgggc ttctttaaat
     2641 tctatattgt agtgtttcgg ttctgtgtct taatagtttg tgatgatttt taaaactgtc
     2701 ttttaaactt atgtaatgat gttgatgttt ttggcgcttt tttttttctt tctggtatta
     2761 gagtttgtat tttcacaaag agtgctttgt agcaggcatt acaattaatc tgttttgtac
     2821 ataaatgtgc caacagcttg atggtggcgt ttttgaaatg tagaacaaag tgcttgcaaa
     2881 atgtaataaa tacacttgtg tactttgtgt acttattatt a
//
LOCUS       XM_032618547            2903 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycoprotein M6A (GPM6A), transcript
            variant X2, mRNA.
ACCESSION   XM_032618547
VERSION     XM_032618547.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2903
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2903
                     /gene="GPM6A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746822"
     CDS             137..928
                     /gene="GPM6A"
                     /codon_start=1
                     /product="neuronal membrane glycoprotein M6-a isoform X2"
                     /protein_id="XP_032474438.1"
                     /db_xref="GeneID:116746822"
                     /translation="MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV
                     NILQTYFEMARTAGDTLDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDL
                     YGDFKITTCGRCFIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCL
                     DLRQFGIVTIGEEKKICTVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLM
                     VLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT"
     misc_feature    146..832
                     /gene="GPM6A"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     Region: Myelin_PLP; pfam01275"
                     /db_xref="CDD:460144"
ORIGIN      
        1 gccggcgagg ctgggagggg cgaggctgtc actcgccgcg gcgcgcggag caggggaggc
       61 gcgcggagcc cttggccccg ggctgcgccg gccgcttgcg ctccggaggg gccgcaggga
      121 aggcggacgc ggcgccatgg ggtgttttga gtgctgtatt aaatgcctgg gaggcattcc
      181 ttatgcctct ctgattgcca ccatcctgct gtacgctgga gttgccctat tctgcggctg
      241 tggtcatgaa gctctttctg gaactgttaa catcctgcaa acctactttg agatggccag
      301 aactgcggga gatacgctgg atgtctttac catgattgac atcttcaagt atgtgatcta
      361 tggcattgct gctgcattct ttgtgtacgg cattctgctg atggtggaag gtttcttcac
      421 gactggggcc atcaaggatc tctacgggga tttcaaaatc accacgtgtg gcagatgctt
      481 tattatgctg acataccttt tcatgctggc ctggctggga gtcacggcgt tcacctcgct
      541 gccagtttac atgtacttca acctgtggac catctgccga aacaccacct tggtggaggg
      601 agcgaatctc tgcctggacc ttcgtcagtt cgggattgtg acaattggag aggaaaagaa
      661 aatttgcact gtctcggaga atttcctgag gatgtgtgaa tccactgagc tgaacatgac
      721 cttccacttg ttcatcgtgg cccttgccgg agctggggct gcagtcatcg ctatggtcca
      781 ctaccttatg gttctgtctg ccaactgggc ttatgtgaaa gatgcctgcc ggatgcagaa
      841 gtatgaggac atcaagtcga aggaggaaca ggaacttcat gatatccact ctactcgctc
      901 caaagagcgg ctcaacgcat acacataaac agcgccttcc cgtcctttcc accattcaaa
      961 tgcattggtg attatctaag ggccatccaa ccatccaacc ttttgaaaaa gaaaatgaaa
     1021 gtgcttctca tcaatgacat ggagggtgac ttatgaatca cctgaataca gttctttgtt
     1081 gtttagcact taatttccta atttgttaaa ttggtgtaat cagagctctc ctccaagctc
     1141 ctatccagcc tttttttttc ttttttaaat ttctcaaact catttaataa ttctgtaaga
     1201 tcaaagagac taacattgtc aaatgcagag atttctttga tttttaacca cttccgtgtg
     1261 ttatacatta taccttttgc attatttctt atgttttgaa aagaaaaata gctttttata
     1321 ctttttagtt ttgatttcgg taactagttt aactacaggt aaccttcaaa agggaccatt
     1381 gtacatgatg aacgatagac agagatgata tcatgatgac ccgaaacatg aaaatcttgt
     1441 ctgaagatca gtggccacgt tgctataggc cctggttaat gttttcatca atctaaggtg
     1501 caatttctaa atttgtaaga gtaggtttaa aaaaaaaaag tgcttcttat ctttgttaac
     1561 attgtatttt ttcttgatgt acttaaaagg cagtactctc tgatgactca tgtttctgtt
     1621 gtgagcatgt agaaacaacg ctgcttatgc atggctactt acctttttaa gattgtgaca
     1681 ccaggcttac cttttaaagt ttagtataga gactatttta acggaaataa ctactgtgga
     1741 ctattggcaa atgatctctt tgtgatttaa gcagtggctg gattggaact tttaatatgt
     1801 taatgtggga cattaattac ctttatgaag gtggtatatt aaaaatgagc acactaaccc
     1861 ctctgaagtt gttttaccta ctttaaaaaa ttttaatgga ttgcacctct gtaaactatc
     1921 cctcaaattg tgtatgatat atttgaaaag gtttccatta atacaatagc tttgcttgca
     1981 gccttccaat ctatgtcggt ttacctgtag tgttttttta aaaagtgtgg tgagaggcca
     2041 ctatacaatg tatccttttg aagtgtagtg atatatttgt gtttttattt ccagtaagtc
     2101 attttaacca aatgttcatt cgtattcatt tataagacgt acctatatca aaagaataaa
     2161 aaaaaaaagc aatcagtatt attggaccaa atttggtgtt tgttttaacc ttaactcttc
     2221 tttcggttat ttctaatgct acaagaatgc tgtaaagtgt cttttaaaat gatatagcct
     2281 gacgagactt tgctgtcagt gtaaaaacta ggtagtattg tgcactgatt tgaccattgt
     2341 gaaatctttt ctcagtgtaa gtgcatttct aataaaattt attgagtgaa gcaatctttg
     2401 tacaatgact agtcatgcat catccataat tttacaagtt cttgtagtag gaaggggggt
     2461 attactaggt tatctgtggc atgattatgc attccgtagt attatttaat taatttgggg
     2521 ttttgcttct ttttttttta cacttagatt atcttactgg ttcaacattt ttctgataca
     2581 tgcagtatta cagatattca gcaaaagtat taatgggctt ctttaaattc tatattgtag
     2641 tgtttcggtt ctgtgtctta atagtttgtg atgattttta aaactgtctt ttaaacttat
     2701 gtaatgatgt tgatgttttt ggcgcttttt tttttctttc tggtattaga gtttgtattt
     2761 tcacaaagag tgctttgtag caggcattac aattaatctg ttttgtacat aaatgtgcca
     2821 acagcttgat ggtggcgttt ttgaaatgta gaacaaagtg cttgcaaaat gtaataaata
     2881 cacttgtgta ctttgtgtac tta
//
LOCUS       XM_032618548            2741 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leptin receptor overlapping transcript
            like 1 (LEPROTL1), mRNA.
ACCESSION   XM_032618548
VERSION     XM_032618548.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2741
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2741
                     /gene="LEPROTL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 10 long SRA reads, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746824"
     CDS             125..520
                     /gene="LEPROTL1"
                     /codon_start=1
                     /product="leptin receptor overlapping transcript-like 1"
                     /protein_id="XP_032474439.1"
                     /db_xref="GeneID:116746824"
                     /translation="MAGIKALISLSFGGAIGLMFLMLGCALPIYNQYWPLFVLFFYIL
                     SPIPYCIARRLVDDTDAMSNACKELAIFLTTGIVVSAFGLPIVFARAHLIEWGACALV
                     LTGNTVIFATILGFFLVFGSNDDFSWQQW"
     misc_feature    143..496
                     /gene="LEPROTL1"
                     /note="Vacuolar protein sorting 55; Region: Vps55;
                     pfam04133"
                     /db_xref="CDD:461188"
ORIGIN      
        1 gccggcggaa gtgctgcgta gcgcacttcc gggtgttgtc tggccgccgc cgcgcgtctc
       61 cggtctcccg gccgcagccg ccgccgtcgc ctagggtccc ggaggcagga gcgacgtcac
      121 cgccatggcc ggcatcaaag ctttgattag tttgtccttt ggaggagcaa ttgggctgat
      181 gtttttgatg cttggatgtg cccttccaat atacaaccaa tactggcctc tctttgttct
      241 gtttttttac atcctttcac ctattccata ctgcatagca agaagattag tggatgatac
      301 ggacgctatg agtaacgcct gtaaggaact ggccatattt cttacaacag gcatcgtggt
      361 ctcagctttt ggactcccta ttgtatttgc cagagcacac ctgatcgagt ggggagcttg
      421 tgcacttgtc ctcaccggaa acactgtcat ctttgcaact atcctgggct ttttcttggt
      481 ctttggcagc aatgatgact tcagctggca gcagtggtga aagggattac tgaactcttg
      541 tcagatggac ttcttgtcat ttctcagccg tccgtgcaca caggaggtgg ggcagtgatg
      601 ccgagcagtg gagcgagcct cttgggggtg ttctaggcgc tccttctctc ttgtattgta
      661 agcatactat tttcacagag acttgctgaa ggattaaaag gattttctcc tttggaaaag
      721 cttgactgat ttcacactta tctctagtat gctttttgtg gtgtcctgct gaatttaaat
      781 atttatgtgt tttccctgtt cagtgttttt ttttaaccag tatgcaacgt taaatatttt
      841 ttaaatctaa taaccatttg cattggttag gaactagagt tctgctggct attactgggc
      901 taaagtactt tttttcctta aaattattta acctccatta ctacacaaag ttataaagat
      961 aagtttttca atcagtcagg atgacatcac tcccaatttt atgcaaacat gcagagtatt
     1021 agcataccta atagatgata tactcagtgc aaatatagct gcatttatac ctcagagggg
     1081 ccaagtatta atgccacgcc ctccatcagg attgctggtt ttgctggaaa gcaggtgttt
     1141 tgtgaactga aaattatttt atggaattgc tacaaaggag tgcttttatt ctcaattgtt
     1201 agaagaactt attgttaaag gtaagagtgt aaaagcagat ttttgagata tgctttttat
     1261 ttatgttaca attagagtga gttgcattgt gggaagaaac gatgttgaaa ttccattttt
     1321 ttgaatcctg tttctattta taagtgaaat ttttaatctt ctttcagact ttcatgtttt
     1381 acatgggtaa agggacacac acagaactac tactgatacg ggaaagtgta tgtttgcatc
     1441 ctacatacta gaaaaccttt tcctgcctcc tccttataac ttattttata cattgtatat
     1501 attaagtaaa ataacttttc caatatggtt taataacacg ttaaactaga ggttttaaca
     1561 catctggaga gtgattgctc caccatacat tcagagtgcc ccagccccgc aaggccttga
     1621 cgtgattaac aagtgacttg ttcgttatgc tgataattca tgtattaaca actcgagatt
     1681 tagaccacgg taattgtagt tcttatcccc aaggttatat catatgtaat ttttaaatat
     1741 ttaaggcagg tttcctgtat acctctcaac tgctttgatt tttatttcac cgtcatagat
     1801 ttgctgttac cttttaaaaa tggccttgat tgtgtgaatt aatgcgaagt agccaaatcc
     1861 agctgtatag cagcttcaga cacaaagctg accaaaacat ccccagtaac caggcgtgat
     1921 cacattgtag tggtcattcc atctcacgat tatcagtact tgttttcagg agctagtttt
     1981 gaaaatgttc aagttggtct gacagtattt tgttaaggac atttgtttat atgtttattc
     2041 agtatactta cataaaatct gttctgcctt cagacgaaaa tggagtaatc atgacaactg
     2101 tcttgtttta taaagttgat ttctctaaaa aatgggaaca aattgtgggt ttgttcagct
     2161 ttttactaaa ggtgcctcaa ggccacgggc tttatcgccc aactcaagtt gttactttga
     2221 gccgtgagat gggaagcaga ataaaaatgc gtgcgtgtgg ctgtcgcatt tacacacagg
     2281 ctgaaagcag cttgcagtgt tagggtgtgg taggcgtaaa gacggaggag gggcagccac
     2341 acgtggatta ggcagctggt gatacagttg ggaactcagt gcctgtgatc tactcaattt
     2401 tttttctttt ttcttttttt tttttttttt tttgccaaaa gtacattctc tggtcttccc
     2461 ccatgcattt tctgttctag aatgtcagtg gcactgctac tgtttcattt acttagccat
     2521 agactctttt tctgagagct gcgtatttct tctgtatact aatcgcactg gcagcattgt
     2581 gtctttggcc ttgcacacta gcttgacata gtgctgtctc tgatttccag gctagttact
     2641 tgaggtctga attttccata gaatgtgcac tgatcctgca ttgccattct tctatggaaa
     2701 gagaactttt gatgatgaaa caataaagat tttaaatatc t
//
LOCUS       XM_032618549            3017 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TM2 domain containing 2 (TM2D2), mRNA.
ACCESSION   XM_032618549
VERSION     XM_032618549.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3017
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3017
                     /gene="TM2D2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 6 long SRA reads, 8
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746825"
     CDS             218..862
                     /gene="TM2D2"
                     /codon_start=1
                     /product="TM2 domain-containing protein 2"
                     /protein_id="XP_032474440.1"
                     /db_xref="GeneID:116746825"
                     /translation="MVLGGCPVSYLLLCGQAALLMGNLLLLHCVSRSHSHNTTAEPEP
                     TSAGAAHPESSTGSASWEYGDPHSPVILCSYLPDEFIECEDPVDHVGNATASQELGYG
                     CLKFGGQAYSDVEHTSVQCHALDGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFL
                     GCFGVDRFCLGHTGTAVGKLLTLGGLGIWWFVDLILLITGGLMPSDGSNWCTVY"
     misc_feature    653..802
                     /gene="TM2D2"
                     /note="TM2 domain; Region: TM2; pfam05154"
                     /db_xref="CDD:428337"
ORIGIN      
        1 ggaattgaca ggcacaagtg aagcgcagcc ccgcctcctg cgcagcctct tcttattagc
       61 tgtcggggtc gggcggagcg tcgagctgct ctcccattgg ctgtttggcg gcgaggagcg
      121 gggctacgcg gagaggcctg accaggcagg gcttgggtcg gcggtgccgg ccggggtttg
      181 aggttgagcc cgggtctccg ccactgggcc cgggaagatg gtgctgggtg gttgcccggt
      241 gagttactta ctcctctgcg gccaggcggc tttgctgatg gggaatctcc tgctgctgca
      301 ttgtgtctct cggagccact cgcacaacac taccgccgag cccgagccca catccgctgg
      361 cgccgcccac ccggagagct ccaccggctc cgcgagctgg gaatatggcg acccccactc
      421 tccagtcatc ctttgctctt acctacccga tgaatttata gaatgtgaag acccagtgga
      481 tcatgttgga aatgcaacgg cctcccagga acttggttat ggttgtctca agttcggtgg
      541 tcaggcctac agtgatgtgg aacacacctc cgtacagtgc cacgccctgg acggaatcga
      601 atgtgccagt cctaggacct tcctacgaga gaataaacct tgtataaagt ataccggaca
      661 ctacttcata accactttgc tctactcctt cttcctggga tgttttggag tagatcgttt
      721 ctgtctggga cacactggca cagcagtagg gaagctcttg acacttggag gacttgggat
      781 ttggtggttt gttgacctta ttttgcttat tactggaggg ctgatgccaa gtgacggcag
      841 caattggtgc actgtttact aaaaagagcg gctaccgtgg cccagagagg taagtctcct
      901 gaattcatct ctacaggctc agaactcttc cttattatca gacctgacca ttgccttcct
      961 ctttggaggg aatggctttg gttaggaagg tttctttgga ctgtggattt tcaacccaaa
     1021 cttcaccttg cagactagaa atgacaagca aacagtattg tgggtatcaa gtttgcacct
     1081 ttcctcatat acaaaaaata taaaggatag tgattaactt ataagctgca ggagggtttc
     1141 catacacttt atttctgtgc gttgctgtat aatcaatcct ttggagcaag tggacccaac
     1201 aggataagca aagtgaatat ttttagcctt gtgccttttg cgaccctgag tcctcacgcg
     1261 gtggagatcg gaagctgaac caatgaaaat cttcagaagt agaaatgacg atggatttta
     1321 attacactga aattctgagt ttctgagttt aaattgcaga ataaatgttg ccaacctgga
     1381 atgctcgttt gggtgttctc agtaggtaga atgaaactca aaattatatt tgttgtgttt
     1441 aaagctaagc atttgaactg agcctgataa taaaccctat tgtttcatca ttattatgcc
     1501 tgagagggaa tatatccagt acagtaattt cctcattcca gttatgtttt ggatagctga
     1561 acatggctga gttcagccat cctcttggca gacttttcct atcaaaaaag tagtatttac
     1621 cagtttagag agcccatgtt gtagactagt aaaaaaaaaa aaaaaaaaaa gatttcacac
     1681 aagtaactgt aaatctgttc ttcatgatta ggtaagataa tatgaggggc ctcaggcccc
     1741 tggaaagaaa agcagactct tccttaaagg atattactac tgagtgctgg gtagagttag
     1801 gattgatctg ggggggcaaa gagaaactga acacattctg tcaaaataag catggtacca
     1861 aaatctctca gtgtgggcta tagcaatcag tcataggaaa agagacagcc aaggtttcga
     1921 gttcccaaat cactgggaat aaaagaaaat gttctgaatt ataagtggtt tttaaaactt
     1981 agttcccatc ccttgcaatc tgagttgaaa agaatataag gtaaaaatgg ggtttgtaag
     2041 gtaaatcaaa gtaagagcct ggtagttggg caacttataa attctaaaaa caatcaaggt
     2101 agaactgctc aaagtttagt ctcataataa ttgacataaa gaccaagaat cccagttaaa
     2161 gtaactctga atatgctcta tcattatgaa gttttcctaa gagtttcagc tttattatct
     2221 ctgattaata tgaccactgt tcttacggta ttaaatggtg gcaattatgt aaaagttaaa
     2281 acagattatt ctattttgtc ctgaaagttc tgtaccatgt tgaccttaac cttctttata
     2341 acagtaataa ttgatagatt cttatttata atctctacac tctaaggcag tacattttaa
     2401 attgttgtgg gtcatgaaga aactggacct tctccccaga aaaatgcaca gaaacataaa
     2461 attttgcata gaacttaaga gggttcaagg atgccccctt ttaaaaagaa aaagaaaaaa
     2521 aacttctaag aaaaatctgg aaaacaaact aaaattgaaa tcttacccca aataagatac
     2581 tactttaaaa ccacaaatcc tgcttcatct cacaaaaaaa aaaaaaaaaa aaaaaatctt
     2641 aaggatattc acaagcccca tccaaagcta ttttccttta aaaataaaaa ataaactgtg
     2701 gcagctttca gactcaaaat cattaatcat taatgtttcc aggaggaaga gcttgggtaa
     2761 agaggtaaaa gtctgtaagt tattaaattt tgtattttaa agaagaagcc cttctcacag
     2821 aaaaggtgat ggggatcaaa gttgtttcca ctgctaggtg acagcctgag agtctttacc
     2881 gtcctctgtg acgatccaca tttgtcagtt tcagtgtggc ttctagttga tgcccatcct
     2941 ctgtattcac aaacactggc caaatgtgac acaacctgaa aaactatttg aataaaggaa
     3001 tattttgaaa aatgtga
//
LOCUS       XM_032618550            3210 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus HtrA serine peptidase 4 (HTRA4), mRNA.
ACCESSION   XM_032618550
VERSION     XM_032618550.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 3 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-260               VOSU01000013.1     30731594-30731853
            261-511             VOSU01000013.1     30731856-30732106
            512-631             VOSU01000013.1     30732495-30732614
            632-836             VOSU01000013.1     30733345-30733549
            837-1031            VOSU01000013.1     30734453-30734647
            1032-1064           VOSU01000013.1     30735063-30735095
            1065-1149           VOSU01000013.1     30743142-30743226
            1150-1207           VOSU01000013.1     30743740-30743797
            1208-1303           VOSU01000013.1     30744204-30744299
            1304-1355           VOSU01000013.1     30747826-30747877
            1356-1356           "N"                1-1
            1357-3210           VOSU01000013.1     30747878-30749731
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3210
                     /gene="HTRA4"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2 long
                     SRA reads, 3 Proteins, and 81% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746826"
     CDS             132..1469
                     /gene="HTRA4"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 1 codon; substituted 3 bases at 3
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:879..881,aa:OTHER)
                     /transl_except=(pos:1140..1142,aa:OTHER)
                     /transl_except=(pos:1173..1175,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: serine protease HTRA4"
                     /protein_id="XP_032474441.1"
                     /db_xref="GeneID:116746826"
                     /translation="MTRPLLRPAGLGPFVLTWLPLPAAPGRGVQARRARPAPPCPPLP
                     SARRGTAPGLDRCGGCRVCAAAEGEACGGALGRPCAARAPAPRRRGTAACCGDCRTYP
                     SLCALCAEIRAARVRGALPAGAVRKMEHLFAGTRNAGWLRTKYNFIAAVVETVAPSMV
                     HLQLFRGSPLSSEDIPASSGSGFIVSEDGLIVTNAHVLTNQQRIQVELQSGVQYEATV
                     KDTDHKLDLALIKTEPNTELPVLLLGKSSDLXAGEFVVALGSLFSLQNTGTAGIVSAT
                     RREGKELGLKDSGMDYIQTDAIINRGNSGGPLVNLDGDVIGINTLKVTTGISFAIPLD
                     CIXQKGKVVSQKKXLVLRMLPLTMNLLQEMKRPDPHFRDVTSGVFVYEVIRGTAAESS
                     GLRDHDVIVSINRQPVXTTTDVIEAVKANDSLSILVRWRSQTLILTDTPEIIN"
     misc_feature    <291..359
                     /gene="HTRA4"
                     /note="Insulin-like growth factor binding protein; Region:
                     IGFBP; pfam00219"
                     /db_xref="CDD:459717"
     misc_feature    663..1424
                     /gene="HTRA4"
                     /note="Periplasmic serine protease, S1-C subfamily,
                     contain C-terminal PDZ domain [Posttranslational
                     modification, protein turnover, chaperones]; Region: DegQ;
                     COG0265"
                     /db_xref="CDD:440035"
ORIGIN      
        1 ttctgcccct taaagtcggg gtctgaagga ggcggcatcc cagttcggag aaagcgttgc
       61 tcgtctgaga gcagctgcgg gtccagagga gagtccgcgg gaaagtggga aggaaggagg
      121 aagggagcgg gatgacgaga cccctgctgc ggcccgccgg gctcggaccg ttcgtcctga
      181 cgtggctgcc gctgcccgcg gctccgggga gaggagtcca ggccaggagg gccaggcccg
      241 cgccgccgtg cccgccgctg ccctctgctc ggcgggggac ggccccgggg ctcgaccgct
      301 gcgggggctg ccgcgtctgc gccgcggccg agggcgaggc ctgcggcggg gcgctcggcc
      361 ggccgtgcgc cgcccgcgcc ccggctcctc ggcggcgggg gacggccgcg tgctgcggcg
      421 actgtcgcac ctaccccagc ctgtgcgcgc tctgcgccga gatccgcgcc gcgcgcgtcc
      481 gtggcgccct cccggcaggg gcggtgcgga aaatggagca tctctttgcg gggaccagaa
      541 acgcaggctg gctcaggacc aagtacaact tcatcgccgc cgtggtggag acggtggccc
      601 cgtccatggt ccacttacag ctgttccgcg ggtctcctct cagcagtgag gatattcctg
      661 catccagtgg ctctgggttc atagtatctg aggatgggct tattgttacc aatgcccacg
      721 tcctcacgaa ccagcagcgg atccaggtgg agctccagag cggggtccag tatgaagcca
      781 ctgtcaagga cactgaccat aaattggatc ttgccctgat taaaactgag ccaaatactg
      841 aacttcctgt attgctgctg ggaaagtcat ctgacctgtg agctggcgag ttcgtggtgg
      901 ccttgggtag cctgttttca ctgcagaaca cagggacggc aggcattgtc agcgccacac
      961 ggcgagaggg caaagagctc gggctgaagg attcaggcat ggactatatc cagacggatg
     1021 ccataattaa tcgcgggaat tctggggggc ctctggtgaa tttggatggt gatgtgattg
     1081 gcataaacac actgaaggtg accacaggaa tctcctttgc aattcccttg gattgcattt
     1141 gacagaaagg aaaggttgtt tcacagaaga aatagttggt tctgcgcatg ctgcccctca
     1201 ctatgaacct gcttcaggaa atgaaaaggc cagatccaca tttccgtgat gtgacctctg
     1261 gagtttttgt atatgaggtg attcgaggaa cagctgctga aagctctggg ttgagagacc
     1321 atgatgtaat agtcagcata aaccgacaac ctgtcnacac gacaaccgac gtgattgaag
     1381 ctgttaaggc caatgattcc ctttctatcc tggttcgttg gagaagtcaa acgttgatcc
     1441 tgacagacac acctgaaata atcaattaag tgtcttgctt taaaaagaaa tgatctaaca
     1501 aaaccaaagc tttattacct ggtttgtatt gaagatgtgc caaagatggc aaggggtttt
     1561 aggatctgtt tcttaataaa ggaaaacgaa tgctttaaaa cacaaataca cacactctgg
     1621 aaccattagg ttgggggtgt tataactgct gctaagaagc attcctaagg caagtggaag
     1681 aaggacatgg tgccaggaag tctggggagc tgataaaatt ttatttaaag acaggaaaca
     1741 actgaaaaca ggcagagttt ctagtttaac cttgacaaaa aggacacttc agtatttaaa
     1801 aacttctcta tagccacaaa ctggatataa cacaaatata cacaaacaaa tagatctatc
     1861 taccaaatat taagaaaaaa actgaatcca gagtataaag gaaatcacat ttttcaaaat
     1921 attcctttat tcaaatagtt tttcaggttg tgtcacattt ggccagtgtt tgtgaataca
     1981 gaggatgggc atcaactaga agccacactg aaactgacaa atgtggatcg tcacagagga
     2041 cggtaaagac tctcaggctg tcacctagca gtggaaacaa ctttgatccc catcaccttt
     2101 tctgtgagaa gggcttcttc tttaaaatac aaaatttaat aacttacaga cttttacctc
     2161 tttacccaag ctcttcctcc tggaaacatt aatgattaat gattttgagt ctgaaagctg
     2221 ccacagttta ttttttattt ttaaaggaaa atagctttgg atggggcttg tgaatatcct
     2281 taagattttt tttttttttt ttttttttgt gagatgaagc aggatttgtg gttttaaagt
     2341 agtatcttat ttggggtaag atttcaattt tagtttgttt tccagatttt tcttagaagt
     2401 tttttttctt tttcttttta aaagggggca tccttgaacc ctcttaagtt ctatgcaaaa
     2461 ttttatgttt ctgtgcattt ttctggggag aaggtccagt ttcttcatga cccacaacaa
     2521 tttaaaatgt actgccttag agtgtagaga ttataaataa gaatctatca attattactg
     2581 ttataaagaa ggttaaggtc aacatggtac agaactttca ggacaaaata gaataatctg
     2641 ttttaacttt tacataattg ccaccattta ataccgtaag aacagtggtc atattaatca
     2701 gagataataa agctgaaact cttaggaaaa cttcataatg atagagcata ttcagagtta
     2761 ctttaactgg gattcttggt ctttatgtca attattatga gactaaactt tgagcagttc
     2821 taccttgatt gtttttagaa tttataagtt gcccaactac caggctctta ctttgattta
     2881 ccttacaaac cccattttta ccttatattc ttttcaactc agattgcaag ggatgggaac
     2941 taagttttaa aaaccactta taattcagaa cattttcttt tattcccagt gatttgggaa
     3001 ctcgaaacct tggctgtctc ttttcctatg actgattgct atagcccaca ctgagagatt
     3061 ttggtaccat gcttattttg acagaatgtg ttcagtttct ctttgccccc ccagatcaat
     3121 cctaactcta cccagcactc agtagtaata tcctttaagg aagagtctgc ttttctttcc
     3181 aggggcctga ggcccctcat attatcttac
//
LOCUS       XM_032618551            5145 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus WRN RecQ like helicase (WRN), mRNA.
ACCESSION   XM_032618551
VERSION     XM_032618551.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5145
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5145
                     /gene="WRN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746827"
     CDS             158..4495
                     /gene="WRN"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:3014..3016,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: Werner syndrome
                     ATP-dependent helicase"
                     /protein_id="XP_032474442.1"
                     /db_xref="GeneID:116746827"
                     /translation="MNEQTLETTQQRKLPEWMSTQKTYSVEERKASIQKSILEDDLPF
                     LEFSGSIVYSYEANDCSFLSEDISMSVSDGDVVGFDMEWPPIYSKGKLSRVALIQLCV
                     SESKCYLFHISSMSVFPQGLKMLLENEAIKKAGVGIEGDQWKLLCDFDIKLKSFVELT
                     DVANEKLKCTETWSLSGLVKHLFGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAG
                     FIIYQKLENSGDAVQIFAIHEEEEVLPSDVKKQLTSVSEEMIDLAKHLPDTFEKLENP
                     QRVSVLLKDISENLYSLRKMILGSTENELRPSSNFHLLPLEEPTAGEVQQKQIREHKI
                     FTKVTDEAWDTTPDNLIKHDGENVLANEVKQEDGFEDELEDNKLEETPERVCFMSLDI
                     TEDELQRLEQQAQEKHLGDVTCKSPEDNEEDISYVIESDEDLEMEMLKSLENLNSSTV
                     DPNHSKCIEMERNLGLPSEDDDEDENEAIEEEEVVDEDCWLPGPTAKQINCLKTYFGH
                     SSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGGIGLVISPLISLMED
                     QVLQLEMSNIPACFLGSAQSKNVLEDIKLGKYRIVYITPEFCSSNLDLLQQLQANIGI
                     TLIAVDEAHCISEWGHDFRSSFRTLGSIKAVLPSVPIVALTATASSSIREDIVRCLKL
                     TDPHITCTGFDRPNLYLEVGRKTGNILQDLKQFLVQKTSSAWEFEGPAIIYCPSRRMT
                     ERVTAELKKLKLACGTYHAGLSINLRRQVHHRFMRDEIQCVIATIAFGMGINKADIRQ
                     VIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPGDINTNRRLLSEICNEKFRLYKL
                     KMMAKMEKYLYSRRCRRQLILSHFEDKQLRKASVGIMGTENCCDNCRSRLDRCFSIDD
                     SDDMSQDFGPQAFQLLSAVTILGEKFGIGVPILFLRGSXNSQRLEDRYRSHNFFGTGK
                     DHTENWWKVFSHQLITEGFLVEVPGQSKFVKICTLTEKGRNWLAKAKTESPQSLILQA
                     NEELCPKEFFSSSKAVSSGTEQHSSNQVPVELTSEQPSLYKMYSYKARDKISSGSNIP
                     EKSIMVPSPGKYYKSSEPVISAKEQETQTTLYGKLVEARQKHANKMNVPPAILATNKI
                     LVDMAQMRPTTVENVKRIDGVSEGKATMLAPLLEVIKHFCQINSLQTDLFSSTKPQEE
                     QKKSLVVKNKASSLSQSAAITYSLFQEKKMCLKSVAENRILPLAAVGMHLSQAVQAGY
                     PLDMERAGLTPEIQKIIADVIRNPPINSDTNKIKLIRMYVPENIDTYLIYMAAEILEK
                     GCENRMLCQSPCDSSKKRCFPNSEESCSNSKRRKEEVGTNTKVDGKHSCDFSQEDESH
                     RNSLKLTSWNQPFSDPQIEDFFVDSHLQTSSETSKRKLPGWFAKRNETLPDASKKSTA
                     KTKKKGLFS"
     misc_feature    332..838
                     /gene="WRN"
                     /note="DEDDy 3'-5' exonuclease domain of RNase D, WRN, and
                     similar proteins; Region: RNaseD_like; cd06129"
                     /db_xref="CDD:176650"
     misc_feature    order(395..406,563..568,572..580,677..682,785..787,
                     797..799)
                     /gene="WRN"
                     /note="putative active site [active]"
                     /db_xref="CDD:176650"
     misc_feature    order(395..397,401..403,578..580,785..787,797..799)
                     /gene="WRN"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176650"
     misc_feature    order(398..406,563..568,572..577,677..682,785..787,
                     797..799)
                     /gene="WRN"
                     /note="putative substrate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176650"
     misc_feature    1655..3076
                     /gene="WRN"
                     /note="ATP-dependent DNA helicase, RecQ family; Region:
                     recQ_fam; TIGR00614"
                     /db_xref="CDD:129701"
     misc_feature    3497..3733
                     /gene="WRN"
                     /note="Helicase and RNase D C-terminal; Region: HRDC;
                     smart00341"
                     /db_xref="CDD:128635"
     misc_feature    3818..4099
                     /gene="WRN"
                     /note="Helix-turn-helix domain; Region: HTH_40; pfam14493"
                     /db_xref="CDD:464189"
ORIGIN      
        1 gctccggcgt ggactctgcc ccgcgggaat aaggttgatt gaattgttgt ccagcatgag
       61 tgactgggtt ccaggcaatg ccgttgggac gctgcacaag tcgtccagct gaaggagaag
      121 tcccgttgaa ctgactcttc tcacgaacct tttaaagatg aatgaacaaa cattggaaac
      181 aacacagcag cggaaacttc ctgaatggat gtctacgcag aagacatatt ctgtagaaga
      241 aagaaaggca tctattcaga agagcatttt ggaagatgat ctccccttct tagaattcag
      301 tggatccatt gtgtacagtt atgaagctaa tgattgttct ttcctatcag aagatattag
      361 catgagtgtg tctgatggag atgtggtagg atttgacatg gaatggccac caatatacag
      421 taaagggaaa ctgagcagag ttgcactaat tcagctgtgt gtgtcagaga gcaaatgtta
      481 cttgtttcat atttcttcta tgtcagtttt ccctcaggga ttaaaaatgt tgcttgaaaa
      541 tgaagcaatt aaaaaggcag gtgtaggaat tgaaggagat cagtggaaac ttctatgtga
      601 ttttgacatc aaattgaaga gttttgtgga gctgacagat gttgccaatg aaaagttgaa
      661 atgtacagag acctggagcc tcagtggttt ggttaaacac ctctttggta aacagcttct
      721 gaaagacaag tctatccgct gcagcaactg gagtaagttt cccctcactg aggaccagaa
      781 actatatgca gccactgatg cttatgctgg tttcatcatt tatcaaaaat tagaaaattc
      841 gggagacgct gtacagatat ttgctataca tgaagaggaa gaagtactac ctagtgacgt
      901 gaagaaacaa ttgacttcag tctctgagga gatgatagat ctggctaagc atcttcctga
      961 tactttcgaa aaactggaaa atccacagag ggtttctgta ctattgaagg atatttcaga
     1021 aaatctgtat tcattgagga agatgatact tggttctact gagaatgaac tgaggcccag
     1081 cagtaatttt cacttattac cgttggaaga gcccactgct ggcgaagtac aacagaaaca
     1141 aattagagaa cataaaattt ttactaaagt tacagatgaa gcatgggaca caacacctga
     1201 taatttaatt aaacatgatg gagaaaatgt acttgcaaac gaagtaaaac aagaagatgg
     1261 atttgaagat gaactagaag ataataagtt ggaagagact ccagaaagag tttgtttcat
     1321 gtcattagat attacagaag atgaactcca acgtttggaa caacaggctc aggaaaaaca
     1381 tcttggtgat gttacttgca aatctcctga ggataacgaa gaggatatat cttatgtaat
     1441 tgagagtgat gaagatttag aaatggagat gcttaagtct ttagaaaacc taaatagtag
     1501 cacagtagat ccaaatcatt caaaatgcat agaaatggaa agaaatctgg gtcttccttc
     1561 tgaagatgat gatgaagacg agaatgaagc cattgaagag gaagaagttg ttgatgaaga
     1621 ctgttggtta ccaggaccta ctgcaaagca aattaattgc ctcaagacct actttggcca
     1681 ttctagtttt aagccggttc agtggaaagt gattcattct gtattggaag aaagaagaga
     1741 taatgttgtt gtcatggcaa ctgggtatgg aaagagtttg tgcttccagt atccacctgt
     1801 ttatgtaggc gggattggcc ttgtcatctc tccccttatt tctttgatgg aagaccaggt
     1861 gctccagctt gaaatgtcca acattccagc ttgctttctt ggatcagcac agtcaaaaaa
     1921 tgttctagag gatattaaat tgggcaaata ccggattgtg tacataactc cagaattctg
     1981 ttcaagtaac ttggacctac tccagcaact gcaggctaat attggtatca cacttattgc
     2041 tgtggatgag gctcactgta tttctgagtg gggacatgat tttagaagtt cattcagaac
     2101 tttgggctcc ataaaggcag tactcccatc ggttccaatt gttgcactga ctgctactgc
     2161 aagttcttca atccgagaag acattgtacg ttgcttaaaa ctgacggatc ctcacattac
     2221 ctgtactggt tttgatcgac caaacttgta tttagaagtt ggacgaaaaa caggaaacat
     2281 ccttcaggat ctgaagcaat ttcttgtcca gaagacaagt tctgcttggg aatttgaagg
     2341 tccagctatc atctactgtc cttctagaag aatgacagaa cgagttacag ctgaacttaa
     2401 gaaactgaag ttagcctgtg gaacatacca tgcaggactg agtattaact taaggagaca
     2461 agttcatcat aggttcatga gagatgaaat tcagtgtgta atagctacca tagcttttgg
     2521 aatgggcatt aataaagctg acattcgcca agtcattcat tacggtgctc ctaaggaaat
     2581 ggaatcgtat taccaggaga ttggtagagc tggccgtgat ggacttcaaa gttcttgtca
     2641 tgtactttgg gctccaggag acattaacac aaataggcgc ctccttagtg aaatatgcaa
     2701 tgaaaagttt cgattataca aattaaagat gatggcaaag atggaaaaat atctttattc
     2761 cagaaggtgt aggcgacaac tcatcttgtc tcattttgaa gacaaacagc tacgaaaggc
     2821 ctccgtggga attatgggaa ctgaaaattg ctgtgataat tgcaggtcca gattggatcg
     2881 ctgcttttcc attgatgact cagatgatat gtcacaggac tttggtccac aagcattcca
     2941 gctcttatct gccgtgacca tcttaggcga aaagtttgga attggggttc caattttatt
     3001 tctccgagga tcgtaaaatt cccagcgtct tgaagataga tatcgcagtc acaatttctt
     3061 tggcactggc aaggatcaca cagagaattg gtggaaggtt ttttcccatc agctcataac
     3121 tgagggattc ttggtagaag ttcctgggca aagcaaattt gtaaagattt gcacccttac
     3181 agaaaagggt agaaattggc ttgctaaagc caaaacagaa tctcctcaga gccttatcct
     3241 tcaagctaat gaagaattgt gtccaaagga gtttttttcc agttctaaag ctgtatcttc
     3301 cggcactgag caacattcct ctaatcaagt accagttgaa ttaacttcag agcagcccag
     3361 cttgtataag atgtattctt acaaagcacg tgataaaatt tcttctggga gtaacattcc
     3421 tgaaaaaagc atcatggtgc catcaccagg aaaatattac aagtcctcag aacctgttat
     3481 ttcagccaaa gagcaggaga ctcagactac attatatggc aaattggtgg aagctaggca
     3541 gaaacatgcc aataaaatga atgttcctcc agctattctg gcaacaaata agatactggt
     3601 ggatatggcc caaatgagac ctactacagt tgaaaatgtg aaaaggatcg atggtgtttc
     3661 tgaaggcaaa gctacaatgt tggcccctct gttggaagtc atcaaacatt tctgtcaaat
     3721 aaatagtctt cagacagacc tcttttcaag tacaaaacca caagaagaac agaagaaaag
     3781 tctggtggtg aaaaataaag caagctcact ttcacagtct gcagccatca catattcttt
     3841 attccaagaa aagaaaatgt gtttgaagag tgtagctgag aacaggattc tgcctctcgc
     3901 agcagttggc atgcacttgt cccaagcggt gcaagctggc tacccactcg atatggagcg
     3961 agcaggtctg actccagaga ttcagaagat tattgctgat gttatccgaa accctcccat
     4021 caactcagat acaaataaaa ttaaactaat tagaatgtat gttcctgaaa acattgacac
     4081 ctaccttatc tacatggcag ctgagatcct ggaaaaaggc tgcgaaaaca ggatgctatg
     4141 ccaatctcca tgtgattcca gcaaaaagag atgtttcccc aactctgaag agagctgttc
     4201 aaattctaag agaaggaagg aagaagtggg cactaatacc aaggttgatg gaaaacattc
     4261 ttgtgatttt tcacaggaag atgagagtca cagaaattca ctaaaactaa cttcctggaa
     4321 tcagccattc agcgatcccc aaattgaaga tttctttgta gattctcatt tacagacttc
     4381 gtctgaaacc tcaaagagaa aattacctgg gtggtttgcc aaaagaaatg agaccttacc
     4441 tgatgccagc aagaaatcaa cggccaaaac taaaaagaag ggtcttttta gttgaactgg
     4501 caactgccag aggaattatg tgtgtcttgc tgtgttacaa gagggaagct gtatttcatt
     4561 tctgaaaaca gtggggagta atatttttgt ttaaaaatta ttctaatctc aaagtaaaac
     4621 tcacctattt attgaacagc tggtgtctta aaacagcctt ttgaaattca cataaagttg
     4681 agtcttctga gagcctgagt gagtacctca tagaacagaa tcttagtttc ctatgagatt
     4741 gctttaagaa atcatgttac tgccctgttt tctaatctct ttacttactt cagcagtatg
     4801 gttggaatat gtaatgtgcg gtgatttaat atagataaca gattatcagt tgtaagtgat
     4861 tatgtgtgtg atatgtaata ttcctgtatt accaaaattc tgtcttataa atgaagaacg
     4921 catagttatt ttacaaattg ttttttctat tgttagaaga aactcttata cacattttaa
     4981 aatgatatta gtggaccaga ccagtgaaaa tgaaacattt cgggttctgt gtagaggaaa
     5041 gaatataaca aaggagacca attacactag acaactatgc actttgtatg ttatatacga
     5101 tttctattat ttttcaaata ataataaaaa gtccttagta ctgaa
//
LOCUS       XM_032618552            1600 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus voltage dependent anion channel 3
            (VDAC3), transcript variant X1, mRNA.
ACCESSION   XM_032618552
VERSION     XM_032618552.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1600
                     /gene="VDAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 6 long SRA reads, 36
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746828"
     CDS             304..1155
                     /gene="VDAC3"
                     /codon_start=1
                     /product="voltage-dependent anion-selective channel
                     protein 3"
                     /protein_id="XP_032474443.1"
                     /db_xref="GeneID:116746828"
                     /translation="MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTS
                     GHAYTDTGKASGNLETKYKICNYGLTFTQKWNTDNTLGTEVSLENKLAEGLKLTLDTI
                     FVPNTGKKSGKLKASYKRDCFSLGSNVDIDFSGPTIYGWAVLAIEGWLAGYQMSFDTA
                     KSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTR
                     FGIAAKYKLDCRTSLCAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVG
                     LGFELAA"
     misc_feature    316..1149
                     /gene="VDAC3"
                     /note="Voltage-dependent anion channel of the outer
                     mitochondrial membrane; Region: Porin3_VDAC; cd07306"
                     /db_xref="CDD:132767"
     misc_feature    order(349..351,361..363,439..441,484..486,553..555,
                     763..765,1147..1149)
                     /gene="VDAC3"
                     /note="putative determinants of voltage gating [active]"
                     /db_xref="CDD:132767"
     misc_feature    order(382..384,388..390,1072..1074,1078..1080,1132..1134)
                     /gene="VDAC3"
                     /note="putative dimerization interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132767"
ORIGIN      
        1 tggacaaagg tgcggtcgcc cggcctgcgc gccccacgtc aacctccgcc cgtccctgcg
       61 cgccgggccc tgccgcgcac gcgcgcactc ggacggttgg agatgtaggt ccgcctcggg
      121 cctgccgcgc gcgaccccgg cgcgacactc cggcgcagcc gcgacgcggg gctcggggcg
      181 cgcaggcgcc gcgggcgtgg ggccgcgcag gcgcggacgg cgttgttctg aagactttct
      241 tcggtgttct ggcggagcgg gcgcgccctc ctggctgagc ggacaggtcc tcccgtcgga
      301 gatatgtgta acacaccgac ttactgtgac ctaggaaagg ctgccaagga tgtcttcaac
      361 aaaggatatg gatttggcat ggtcaaaata gatctgagaa ccaagtcatg tagtggagtg
      421 gaattttcta cttctggtca tgcttacact gatacaggga aagcatcagg caacctagag
      481 accaaataca agatttgtaa ctatggactg accttcaccc aaaagtggaa cacagacaat
      541 actcttggga cagaagtctc tttggagaat aagttggctg aagggttgaa attgactctt
      601 gataccatat ttgtaccgaa cacaggaaag aagagtggga aattgaaggc ctcctataaa
      661 cgggattgtt tcagtcttgg cagtaatgtt gatatagatt tttctggacc aaccatctac
      721 ggctgggctg tgttggccat tgaaggttgg cttgctggct atcagatgag ttttgacaca
      781 gccaaatcca aactgtcaca gaataatttc gccctgggtt acaaggctgc agacttccag
      841 ctgcacactc acgtgaacga tggcactgaa tttggagggt cgatctacca gaaggtgaac
      901 gagaagattg aaacgtcaat aaacctcgcg tggacggctg gcagtaacaa cacccgtttc
      961 ggcatcgccg ctaagtacaa gctggactgt agaacttctc tatgtgctaa agtgaataat
     1021 gccagcctga ttggactggg ttatactcag acccttcgac caggagtgaa actgaccctg
     1081 tcagctctaa tcgatggaaa gaacttcaat gcaggagggc acaaggtcgg gctgggattt
     1141 gaactagcag cttaatgtgg ttttgaataa agcatcagct ttgtccctgg aggtgaagag
     1201 aagtcaaccc actatgtttt ggccttaaaa ttcttctgtg agatttcaaa ggtgtgaact
     1261 ttttattctt ccaaagaatt gtaatcctcc tcacacagaa gcctagatat tgagtccagc
     1321 ctaagggagg tgtgcttgaa gacatgcccg gaagttgtcc tgttcgtgcc acatttcagt
     1381 tcagttccgc agtgttattt tcaatgtgtt gctcaagcga cagtgtagtg tcatgttaca
     1441 aaggagatga cccgaccctc cagttgtcca tcacgtcctg catgtcccac accacttttt
     1501 catgaccttg taatatatcg gtctctgcgg tagtggaatt tttcgttttg catcagagta
     1561 aaataaaata aacccatcac atttggaaca taattggtca
//
LOCUS       XM_032618553            1797 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus voltage dependent anion channel 3
            (VDAC3), transcript variant X2, mRNA.
ACCESSION   XM_032618553
VERSION     XM_032618553.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1797
                     /gene="VDAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 5 long SRA reads, 36
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746828"
     CDS             507..1358
                     /gene="VDAC3"
                     /codon_start=1
                     /product="voltage-dependent anion-selective channel
                     protein 3"
                     /protein_id="XP_032474444.1"
                     /db_xref="GeneID:116746828"
                     /translation="MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTS
                     GHAYTDTGKASGNLETKYKICNYGLTFTQKWNTDNTLGTEVSLENKLAEGLKLTLDTI
                     FVPNTGKKSGKLKASYKRDCFSLGSNVDIDFSGPTIYGWAVLAIEGWLAGYQMSFDTA
                     KSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTR
                     FGIAAKYKLDCRTSLCAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVG
                     LGFELAA"
     misc_feature    519..1352
                     /gene="VDAC3"
                     /note="Voltage-dependent anion channel of the outer
                     mitochondrial membrane; Region: Porin3_VDAC; cd07306"
                     /db_xref="CDD:132767"
     misc_feature    order(552..554,564..566,642..644,687..689,756..758,
                     966..968,1350..1352)
                     /gene="VDAC3"
                     /note="putative determinants of voltage gating [active]"
                     /db_xref="CDD:132767"
     misc_feature    order(585..587,591..593,1275..1277,1281..1283,1335..1337)
                     /gene="VDAC3"
                     /note="putative dimerization interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132767"
ORIGIN      
        1 cgcctaacgg ggcgcgggcc cgcgggcggg gtcggcgggg accggcccct cgggtgatgg
       61 accgccgcgc cgccacctgc ttgcgcccgg ccggtcccca ggactctccg ggcgtcaggc
      121 cggacgggag gttggtttcg agggaagtcg ggtcctcgaa ccccgaaccc acccccgccc
      181 ccggcttcct ccctggcatt ggagtccacc atgagggggg ctcttccact ccctgccgcc
      241 gaggggagga tgctgaatgt gcaccttcaa ggggcgaggc gagctgacgg tcccgttagt
      301 aatcgtgtga agctgggtta taactaaccc gtcaccccca tcccccgact gcggctcctg
      361 caaccccggt gcgctgtgcg tgcccacgga caagtgcatt tgtagtcatg gaaatgtgcg
      421 gaacgtgtcg tctctggggc ttctcgagtt tttgcttgat cataccagca gtgcacttcc
      481 catcaggatc ctgggcctga aaaaatatgt gtaacacacc gacttactgt gacctaggaa
      541 aggctgccaa ggatgtcttc aacaaaggat atggatttgg catggtcaaa atagatctga
      601 gaaccaagtc atgtagtgga gtggaatttt ctacttctgg tcatgcttac actgatacag
      661 ggaaagcatc aggcaaccta gagaccaaat acaagatttg taactatgga ctgaccttca
      721 cccaaaagtg gaacacagac aatactcttg ggacagaagt ctctttggag aataagttgg
      781 ctgaagggtt gaaattgact cttgatacca tatttgtacc gaacacagga aagaagagtg
      841 ggaaattgaa ggcctcctat aaacgggatt gtttcagtct tggcagtaat gttgatatag
      901 atttttctgg accaaccatc tacggctggg ctgtgttggc cattgaaggt tggcttgctg
      961 gctatcagat gagttttgac acagccaaat ccaaactgtc acagaataat ttcgccctgg
     1021 gttacaaggc tgcagacttc cagctgcaca ctcacgtgaa cgatggcact gaatttggag
     1081 ggtcgatcta ccagaaggtg aacgagaaga ttgaaacgtc aataaacctc gcgtggacgg
     1141 ctggcagtaa caacacccgt ttcggcatcg ccgctaagta caagctggac tgtagaactt
     1201 ctctatgtgc taaagtgaat aatgccagcc tgattggact gggttatact cagacccttc
     1261 gaccaggagt gaaactgacc ctgtcagctc taatcgatgg aaagaacttc aatgcaggag
     1321 ggcacaaggt cgggctggga tttgaactag cagcttaatg tggttttgaa taaagcatca
     1381 gctttgtccc tggaggtgaa gagaagtcaa cccactatgt tttggcctta aaattcttct
     1441 gtgagatttc aaaggtgtga actttttatt cttccaaaga attgtaatcc tcctcacaca
     1501 gaagcctaga tattgagtcc agcctaaggg aggtgtgctt gaagacatgc ccggaagttg
     1561 tcctgttcgt gccacatttc agttcagttc cgcagtgtta ttttcaatgt gttgctcaag
     1621 cgacagtgta gtgtcatgtt acaaaggaga tgacccgacc ctccagttgt ccatcacgtc
     1681 ctgcatgtcc cacaccactt tttcatgacc ttgtaatata tcggtctctg cggtagtgga
     1741 atttttcgtt ttgcatcaga gtaaaataaa ataaacccat cacatttgga acataat
//
LOCUS       XM_032618554            1312 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus voltage dependent anion channel 3
            (VDAC3), transcript variant X3, mRNA.
ACCESSION   XM_032618554
VERSION     XM_032618554.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1312
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1312
                     /gene="VDAC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 5 long SRA reads, 36
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746828"
     CDS             22..873
                     /gene="VDAC3"
                     /codon_start=1
                     /product="voltage-dependent anion-selective channel
                     protein 3"
                     /protein_id="XP_032474445.1"
                     /db_xref="GeneID:116746828"
                     /translation="MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTS
                     GHAYTDTGKASGNLETKYKICNYGLTFTQKWNTDNTLGTEVSLENKLAEGLKLTLDTI
                     FVPNTGKKSGKLKASYKRDCFSLGSNVDIDFSGPTIYGWAVLAIEGWLAGYQMSFDTA
                     KSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTR
                     FGIAAKYKLDCRTSLCAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVG
                     LGFELAA"
     misc_feature    34..867
                     /gene="VDAC3"
                     /note="Voltage-dependent anion channel of the outer
                     mitochondrial membrane; Region: Porin3_VDAC; cd07306"
                     /db_xref="CDD:132767"
     misc_feature    order(67..69,79..81,157..159,202..204,271..273,481..483,
                     865..867)
                     /gene="VDAC3"
                     /note="putative determinants of voltage gating [active]"
                     /db_xref="CDD:132767"
     misc_feature    order(100..102,106..108,790..792,796..798,850..852)
                     /gene="VDAC3"
                     /note="putative dimerization interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132767"
ORIGIN      
        1 tcctatatct ggttactaga tatgtgtaac acaccgactt actgtgacct aggaaaggct
       61 gccaaggatg tcttcaacaa aggatatgga tttggcatgg tcaaaataga tctgagaacc
      121 aagtcatgta gtggagtgga attttctact tctggtcatg cttacactga tacagggaaa
      181 gcatcaggca acctagagac caaatacaag atttgtaact atggactgac cttcacccaa
      241 aagtggaaca cagacaatac tcttgggaca gaagtctctt tggagaataa gttggctgaa
      301 gggttgaaat tgactcttga taccatattt gtaccgaaca caggaaagaa gagtgggaaa
      361 ttgaaggcct cctataaacg ggattgtttc agtcttggca gtaatgttga tatagatttt
      421 tctggaccaa ccatctacgg ctgggctgtg ttggccattg aaggttggct tgctggctat
      481 cagatgagtt ttgacacagc caaatccaaa ctgtcacaga ataatttcgc cctgggttac
      541 aaggctgcag acttccagct gcacactcac gtgaacgatg gcactgaatt tggagggtcg
      601 atctaccaga aggtgaacga gaagattgaa acgtcaataa acctcgcgtg gacggctggc
      661 agtaacaaca cccgtttcgg catcgccgct aagtacaagc tggactgtag aacttctcta
      721 tgtgctaaag tgaataatgc cagcctgatt ggactgggtt atactcagac ccttcgacca
      781 ggagtgaaac tgaccctgtc agctctaatc gatggaaaga acttcaatgc aggagggcac
      841 aaggtcgggc tgggatttga actagcagct taatgtggtt ttgaataaag catcagcttt
      901 gtccctggag gtgaagagaa gtcaacccac tatgttttgg ccttaaaatt cttctgtgag
      961 atttcaaagg tgtgaacttt ttattcttcc aaagaattgt aatcctcctc acacagaagc
     1021 ctagatattg agtccagcct aagggaggtg tgcttgaaga catgcccgga agttgtcctg
     1081 ttcgtgccac atttcagttc agttccgcag tgttattttc aatgtgttgc tcaagcgaca
     1141 gtgtagtgtc atgttacaaa ggagatgacc cgaccctcca gttgtccatc acgtcctgca
     1201 tgtcccacac cactttttca tgaccttgta atatatcggt ctctgcggta gtggaatttt
     1261 tcgttttgca tcagagtaaa ataaaataaa cccatcacat ttggaacata at
//
LOCUS       XM_032618555            1835 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus exoribonuclease 1 (ERI1), transcript
            variant X1, mRNA.
ACCESSION   XM_032618555
VERSION     XM_032618555.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1835
                     /gene="ERI1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746830"
     CDS             234..1283
                     /gene="ERI1"
                     /codon_start=1
                     /product="3'-5' exoribonuclease 1"
                     /protein_id="XP_032474446.1"
                     /db_xref="GeneID:116746830"
                     /translation="MEDEQSHQPGGEAVAPARRGSRGSACGEEAQRPNSEKKQRWRLD
                     GQETKGSKFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVL
                     KKRLKNYYKKQKLMLKEGNCANSYYDYICVIDFEATCEEGNPPEFIHEIIEFPVVLLN
                     THTLEIEDTFQQYVRPEINTQLSDFCINLTGITQDEVDKADTFPQVLKKVIDWMKLKE
                     LGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTK
                     LTIMLEKLGMDYDGRPHSGLDDSKNIARIAVRMLQDGCELRVNEKMHAGQLMSVSSSL
                     PIEGTPAPQMPHSRK"
     misc_feature    459..563
                     /gene="ERI1"
                     /note="SAP domain; Region: SAP; pfam02037"
                     /db_xref="CDD:460424"
     misc_feature    621..1163
                     /gene="ERI1"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(633..644,648..650,786..788,921..935,945..947,
                     1110..1112,1125..1127)
                     /gene="ERI1"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(633..644,648..650,786..788,921..935,945..947,
                     1110..1112,1125..1127)
                     /gene="ERI1"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
     misc_feature    order(633..635,639..641,933..935,1110..1112,1125..1127)
                     /gene="ERI1"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99836"
ORIGIN      
        1 tggatgccca actgccacca aaaccggtga gggtatctct cacctctgca tcctcggtgt
       61 ctacaagagc tcctggcata tggtctgcaa gtcagctggg atggctctgc ttcaggatgt
      121 ggctttcctg gacttgtttg tctgaaaagc ggagaaaggt gaggctttcg ggcttggccg
      181 agtgagagag cgagtggtgg gctccagcaa ctctttctta cgtgacacgc gtcatggagg
      241 atgagcagag ccaccagccc ggcggcgagg ccgtggctcc cgcgcggcgc ggctcgcggg
      301 ggtcggcgtg cggagaggag gcgcagcgcc cgaattccga gaaaaagcag cgatggagac
      361 ttgatggcca agaaacaaaa ggatctaagt tcattacctc cagtgcaagt gatttcagtg
      421 acccagttta caaagagatt gctattacaa atggttgcat taacagaatg agtaaggaag
      481 agctcagagc caaactttca gaattcaagc ttgaaaccag aggtgtaaag gatgtactaa
      541 agaagagact gaaaaactat tataagaagc agaagctgat gttgaaagag ggcaattgtg
      601 ctaacagtta ctacgactac atttgtgtta ttgacttcga agccacttgt gaagagggta
      661 acccacctga gttcatacat gaaataattg aatttcctgt tgttttactg aatactcata
      721 ccttagaaat agaagatacg tttcagcagt atgtgagacc agagattaac acacagcttt
      781 ctgacttctg catcaatcta actggaatta ctcaggatga ggtagacaaa gctgatacct
      841 tccctcaggt actgaaaaaa gtcattgact ggatgaaatt gaaggaatta ggaacaaagt
      901 ataaatattc catattaaca gatggttcat gggatatgag taagttcctg aacattcagt
      961 gccagctaag caggctcaaa tatccacctt ttgccaaaaa gtggatcaat attcgaaagt
     1021 catatggaaa cttttacaag gttcctagaa gccaaaccaa gctgacaata atgcttgaaa
     1081 aacttggaat ggattacgat gggcggcctc acagtggtct tgatgactct aagaacatcg
     1141 cccgaatagc agttagaatg ctgcaggatg ggtgtgaact ccgggttaat gagaagatgc
     1201 atgcagggca gctaatgagt gtgtcctctt cactaccaat agagggcact ccagcgccac
     1261 aaatgccgca ttccagaaaa taacagcatt tttgcgcttt tgcccgtgga tcattcactc
     1321 taactggagc tgctacaaag aggtagcaga tgaatactta ttgaattagt cctgcagtgc
     1381 aaaatttaag caccttaatc atttaaaatc ttgttacagt tatagatata tgtatgtgaa
     1441 cagattctgt ggggagggca tattgaattc tttgttgaat tctttgtcac cagcactttt
     1501 gatatgagca gtatttgtta cacagtaaca gttcctgctt agaactgaat tttataattt
     1561 aaggtgtcca agatgtgttc cttttggttt taaaatacag aggtttattg gctttcccct
     1621 tgaatgtcat accttattga tgttaaaata tgtaatgtgt ttctacatta acagatcatt
     1681 agatcagatc atttcttaaa atgcagaaaa gattggaaag gtgggcctta tctagccttt
     1741 gggttttaag aatgtcagtg tccttttgat ttttgaaatg tatatgtgaa ggtcagttgt
     1801 gagtggtgaa tttcataaag tacttggtac acata
//
LOCUS       XM_032618556            1756 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus exoribonuclease 1 (ERI1), transcript
            variant X2, mRNA.
ACCESSION   XM_032618556
VERSION     XM_032618556.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1756
                     /gene="ERI1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 long SRA reads, 10
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746830"
     CDS             155..1204
                     /gene="ERI1"
                     /codon_start=1
                     /product="3'-5' exoribonuclease 1"
                     /protein_id="XP_032474447.1"
                     /db_xref="GeneID:116746830"
                     /translation="MEDEQSHQPGGEAVAPARRGSRGSACGEEAQRPNSEKKQRWRLD
                     GQETKGSKFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVL
                     KKRLKNYYKKQKLMLKEGNCANSYYDYICVIDFEATCEEGNPPEFIHEIIEFPVVLLN
                     THTLEIEDTFQQYVRPEINTQLSDFCINLTGITQDEVDKADTFPQVLKKVIDWMKLKE
                     LGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTK
                     LTIMLEKLGMDYDGRPHSGLDDSKNIARIAVRMLQDGCELRVNEKMHAGQLMSVSSSL
                     PIEGTPAPQMPHSRK"
     misc_feature    380..484
                     /gene="ERI1"
                     /note="SAP domain; Region: SAP; pfam02037"
                     /db_xref="CDD:460424"
     misc_feature    542..1084
                     /gene="ERI1"
                     /note="DEDDh 3'-5' exonuclease domain of Caenorhabditis
                     elegans ERI-1, human 3' exonuclease, and similar proteins;
                     Region: ERI-1_3'hExo_like; cd06133"
                     /db_xref="CDD:99836"
     misc_feature    order(554..565,569..571,707..709,842..856,866..868,
                     1031..1033,1046..1048)
                     /gene="ERI1"
                     /note="active site"
                     /db_xref="CDD:99836"
     misc_feature    order(554..565,569..571,707..709,842..856,866..868,
                     1031..1033,1046..1048)
                     /gene="ERI1"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:99836"
     misc_feature    order(554..556,560..562,854..856,1031..1033,1046..1048)
                     /gene="ERI1"
                     /note="catalytic site [active]"
                     /db_xref="CDD:99836"
ORIGIN      
        1 ggaagtggga ggtgtccatt cgagtttgtg tggtcgccgc cgcgggaacg gtagtccggt
       61 aatttttcag cggagaaagg tgaggctttc gggcttggcc gagtgagaga gcgagtggtg
      121 ggctccagca actctttctt acgtgacacg cgtcatggag gatgagcaga gccaccagcc
      181 cggcggcgag gccgtggctc ccgcgcggcg cggctcgcgg gggtcggcgt gcggagagga
      241 ggcgcagcgc ccgaattccg agaaaaagca gcgatggaga cttgatggcc aagaaacaaa
      301 aggatctaag ttcattacct ccagtgcaag tgatttcagt gacccagttt acaaagagat
      361 tgctattaca aatggttgca ttaacagaat gagtaaggaa gagctcagag ccaaactttc
      421 agaattcaag cttgaaacca gaggtgtaaa ggatgtacta aagaagagac tgaaaaacta
      481 ttataagaag cagaagctga tgttgaaaga gggcaattgt gctaacagtt actacgacta
      541 catttgtgtt attgacttcg aagccacttg tgaagagggt aacccacctg agttcataca
      601 tgaaataatt gaatttcctg ttgttttact gaatactcat accttagaaa tagaagatac
      661 gtttcagcag tatgtgagac cagagattaa cacacagctt tctgacttct gcatcaatct
      721 aactggaatt actcaggatg aggtagacaa agctgatacc ttccctcagg tactgaaaaa
      781 agtcattgac tggatgaaat tgaaggaatt aggaacaaag tataaatatt ccatattaac
      841 agatggttca tgggatatga gtaagttcct gaacattcag tgccagctaa gcaggctcaa
      901 atatccacct tttgccaaaa agtggatcaa tattcgaaag tcatatggaa acttttacaa
      961 ggttcctaga agccaaacca agctgacaat aatgcttgaa aaacttggaa tggattacga
     1021 tgggcggcct cacagtggtc ttgatgactc taagaacatc gcccgaatag cagttagaat
     1081 gctgcaggat gggtgtgaac tccgggttaa tgagaagatg catgcagggc agctaatgag
     1141 tgtgtcctct tcactaccaa tagagggcac tccagcgcca caaatgccgc attccagaaa
     1201 ataacagcat ttttgcgctt ttgcccgtgg atcattcact ctaactggag ctgctacaaa
     1261 gaggtagcag atgaatactt attgaattag tcctgcagtg caaaatttaa gcaccttaat
     1321 catttaaaat cttgttacag ttatagatat atgtatgtga acagattctg tggggagggc
     1381 atattgaatt ctttgttgaa ttctttgtca ccagcacttt tgatatgagc agtatttgtt
     1441 acacagtaac agttcctgct tagaactgaa ttttataatt taaggtgtcc aagatgtgtt
     1501 ccttttggtt ttaaaataca gaggtttatt ggctttcccc ttgaatgtca taccttattg
     1561 atgttaaaat atgtaatgtg tttctacatt aacagatcat tagatcagat catttcttaa
     1621 aatgcagaaa agattggaaa ggtgggcctt atctagcctt tgggttttaa gaatgtcagt
     1681 gtccttttga tttttgaaat gtatatgtga aggtcagttg tgagtggtga atttcataaa
     1741 gtacttggta cacata
//
LOCUS       XM_032618557            5502 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 1 regulatory subunit
            3B (PPP1R3B), mRNA.
ACCESSION   XM_032618557
VERSION     XM_032618557.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               VOSU01000013.1     22536783-22536946   c
            165-711             VOSU01000013.1     22530456-22531002   c
            712-712             "N"                1-1
            713-768             VOSU01000013.1     22530400-22530455   c
            769-769             "N"                1-1
            770-867             VOSU01000013.1     22530302-22530399   c
            868-5502            VOSU01000013.1     22525666-22530300   c
FEATURES             Location/Qualifiers
     source          1..5502
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5502
                     /gene="PPP1R3B"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 long
                     SRA read, 4 Proteins, and 96% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746831"
     CDS             190..1044
                     /gene="PPP1R3B"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein phosphatase 1
                     regulatory subunit 3B"
                     /protein_id="XP_032474448.1"
                     /db_xref="GeneID:116746831"
                     /translation="MAVDIECRYSCMAPSLRRERFAFQISQKSSKPLRPCIQLSGKNE
                     ASGTVAPTVQEKKVKKRVSFADNQGLALTMVKVFSEFDDPLDIPLNITELLDSIVSLT
                     TAESESFVLDFSQPSADYLDFRNRLRTEHVCLENCVLKDRAIAGTVKVQNLAFEKMVK
                     VRMTFDTWKSFTDFXCWYVKDTYAGSDKDTFSFXISLPEKIQSYERMEFAVCYECNGQ
                     TYWDSNKGKNYRIIRAELKSTQGTAQPPNGPDFGIAFDQFGSPRCSYGLFPEWPSYLG
                     YEKLGPYY"
     misc_feature    280..498
                     /gene="PPP1R3B"
                     /note="PP1C binding domain found in protein phosphatase 1
                     regulatory subunit 3B (PPP1R3B); Region: PBD_PPP1R3B;
                     cd22814"
                     /db_xref="CDD:439279"
     misc_feature    order(367..390,403..417)
                     /gene="PPP1R3B"
                     /note="PP1C binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:439279"
     misc_feature    565..882
                     /gene="PPP1R3B"
                     /note="Carbohydrate/starch-binding module (family 21);
                     Region: CBM_21; pfam03370"
                     /db_xref="CDD:427265"
ORIGIN      
        1 tcctccccct gccggtcaca actccgggaa cccagcccaa ggcctgcctc ccggacacac
       61 cgaggctcac gtagtctggt ggcggcagcc tcccctgcca cctccctccg ggcattccga
      121 tgcagcgagc cagctggaaa gggggcttcc ccgcggccca acagggttct agcctgctct
      181 agccccgtga tggctgtgga cattgagtgc aggtacagct gcatggcccc ctccttgcgc
      241 agagagcggt ttgccttcca gatctcccag aagtcaagca aacccctgag gccttgtatt
      301 cagctgagcg gcaagaatga agccagtggg acggtggccc cgaccgtcca ggagaagaag
      361 gtgaagaagc gggtgtcctt tgcagacaac caagggctgg ccctgacaat ggtcaaagtg
      421 ttctccgagt ttgatgaccc gttagatatt ccactgaaca tcaccgagct cctggacagc
      481 attgtgagtc tgacaacagc agagagcgag agctttgtgc tggatttctc gcagccctct
      541 gcagactacc tggacttcag aaaccggctt cggactgaac acgtctgcct ggagaactgc
      601 gtcttgaagg acagagccat tgcaggcacg gtgaaggtgc agaacctcgc atttgagaag
      661 atggtgaaag tcagaatgac attcgacacc tggaaaagct tcacagactt tncctgttgg
      721 tacgtgaagg acacgtacgc aggttcagac aaggacacgt tctcctttng aatcagcttg
      781 cctgaaaaaa ttcagtctta tgagaggatg gagtttgccg tgtgctatga gtgcaatgga
      841 cagacatact gggacagcaa taaaggcaaa aactatagga tcatccgggc agagttgaaa
      901 tccacccagg gaacagccca gccaccaaat ggaccagatt ttggaatagc ttttgaccag
      961 tttggaagcc ctcggtgttc ctatggtctg tttccggagt ggcctagtta tttaggatac
     1021 gagaagcttg ggccctacta ttagtgatgg cctgggatgg agccgggctg agtgggtgca
     1081 gaggagccga gctgcatcac cccaggatgg agatggaagc ccagagaaaa gctgaactgc
     1141 catcagacac agttttcgaa aagaaaggat cctagtcaca ttttttcttc aagcaggcaa
     1201 gccagccagg cttagatcac agaactgggt tcacactcag aggagatggg tgtgcggtct
     1261 gtttggcacc cgcgtggtgg caatgagggt ccgagcagga tggtgctgga aacagtctgg
     1321 acaggaccca ggcctgcagg gagcgctggc caggccggag gatggtggcc tcagtgacga
     1381 ggagacctct cccctcgggt gtgggaagtc agtccccccg gccccctctc ctgtggtctt
     1441 tcccgcccac ccagggcctc cccgcctgtt gcagctgccc cgtgtctacg tgggcttcac
     1501 actttatctc tgtgtgtttg attttcttcc acagttcatc tgcagttcag gaaaagataa
     1561 taaaggcaga tcagctcatg acacagacag gcatttcctt ttgctgaccc cacttagata
     1621 tcccagcaga ggacgacaca ccagctatga aaagtcaacc ggctgctgtg cgctgtcacc
     1681 agccatggca ggctggtgcc aggcaggaca gtcaggaggt ggacactttt agctccacct
     1741 cttggcgctg gggggaactt tctaagcact cttaccctga gtcacccgag ggctcaatta
     1801 caagacttgc tgtaacttgc caagctggtt tgcccgtgtc tctttcttca tgaaaggatt
     1861 ttaggatctc tttttcctgg aagagtcatc ttttatgctg tgctcaggac gtttggattt
     1921 gcagattaag tgtatcctcg gcaccttcag gaagtgcttg gttgtatctt gactgtgatt
     1981 tacaacctcc acgttgtaaa cagcacctta caagccccca cggactttga cttggttgtt
     2041 cttacctatg gtatgtgggt acgtaaaggg ataggggaga agaacctcac cgagttctca
     2101 gatgtcgttt tcgctgtttg ccaactctga aatatcagat attatttgtt cttaaccaca
     2161 ttggactaaa gcattaaaag tctgttggtt catactgttg tgagactcct gggactttcc
     2221 ttgtcagatg gacccccaaa ccctgtgatt tttcttgggc aaaattggtt ggtccttggg
     2281 ggtgtttaaa aatattttta catgtgtatt tgtagaaggt tggggtcttt ttctgttctg
     2341 tttttgtttt tggagcttag ctaaatgact gcctcatttt tcttttgcct gaccttacta
     2401 aagtgaggtc ttcctcaggg aggaaggaag agggatgccc cactacctgg atttgggggc
     2461 acagctcctg gactctgcaa gcaaagagtc ttctttcact tgcattatcc agatcagttg
     2521 gaagagacct cccagcttct gtggctttgt aaattagcat caagcaggtc tggagtgtct
     2581 tggctcctaa agttttgtgg ttgggttttt tctttcttga actttaaaaa gttttgactt
     2641 tttaaatgct cttaagtggt gttccacgga gttcttgttc ctaaaactgg ctatgactag
     2701 tctgcaatct actgctttat tttttatgtc tctcctaggt gggcagcact gggggttaca
     2761 tgataattta tgggacagtc acatttttta ttttatgctg acattgggca gaactgggat
     2821 ttatctaagc atgtcttaca tcaggtacac agacagtact ccctgtgtta caaatcaggt
     2881 gatcagaact attatgtaat agtgtaaatc tacaccatgg gaagcaaaac tgatcttata
     2941 taggtcatga atttattttg ctttaggaag tcccaccctc ctcctccagt ttatgaaggg
     3001 tacaaggtgt actgtccttt ccctattaac agaccgaagg tatcaagatc gttccctgtt
     3061 cgtaagaaaa atgcctcaag tgacttctgt atggttttca gtaataagga tcttaaggca
     3121 ttcccgtgtc aggatttgaa atatggtaat tcagtgataa gtatgtcttt taaaacacca
     3181 caaacgctcc cccaccccgc tttcctccca gctgacccct gctttcctgc caggggcact
     3241 ggttgccagc cccctgctgg tgcacctggg ttgctcaccc caccaggcaa gtcctcacct
     3301 gctggcaaag acgcttctct gactaaagca agtgcccgcc cgaggtccct gtcagcatgg
     3361 tcatgcagtg aggttgtagc atctgaaaaa tagtctcctc tttaccaatc agtctgtctc
     3421 cttttggggc ggttctgtcc caggaaatca acagatggcc tcaggacctg ctccttcttt
     3481 gggccttctc cttgttcata gctcaccggc agtagacagg tgacacactg cagaaagtga
     3541 ccggtttctt ttttttttct cacttgcaag gtcataatgt caccatttta attaaggaaa
     3601 acagcttttt ttttcttcca gtggaaacag cttgaaactc aattgataat tcttacaacc
     3661 ggtactaaac aaaggtgggg aaaaaaaccc aatcagaact gataacagca ggtcaacagc
     3721 agacaaagag cagggagaaa gggaattttc catgcaaagg agattgtgca cgtggataat
     3781 tcaaggccac aatcattttc tacccccaag tttatgtgtt gtatgctttc tttcaactga
     3841 attactttaa tattgtttgt gtccatgatt catttaccta gccaaaaata ggctcaccaa
     3901 tgagttttgc agctgtcctt ttttttttaa catctttatt ggagtataat tgctttacaa
     3961 tgatgtgtta gtttttgctg tataacaaag tgaatcagct atacatgtac atacatcccc
     4021 gtatgtcctc cctcttgtgt ctccctccca ccctccctat cccacccctc taggtagaca
     4081 caaagcaccg agctgatctc cctgtgctat gcagctgctt cccactagct atctacctta
     4141 cgtttggtag tgtatctatg tccatgccac tctctcactt catcccagct tacccttccc
     4201 cctccccttg gaaagtgaca ggtttcttag ttggagatat gaatgcagcc tgacctgtag
     4261 gtttgaccct cagacagctc ttggttatga tgacacgtgg cccccttccc aacttgcccc
     4321 caaaggacca gccttctgcc gctggtgcag ctgtccatgg atggggaggc agctccattt
     4381 ctgtttcata tttattcccc gctatgtcct ggggagcatt tgcaaattag gtgcaataaa
     4441 taagctagac tatctaaaga cagattttaa acaataagct ttcagtgttt cttggaagat
     4501 gtgaagcatt tgggcgagtt tgtttgcttt tttaaagtat tcttgttata ggagagctgg
     4561 tgagaaacaa tggagttatg tagttctcca gaaattaaaa taatttcaga gtcaaggtag
     4621 agtttatttc tctctaagat ttaattttaa tggtggcaaa acattactct ctcaatgttt
     4681 cttaaagatg taaatcttga actgctaaaa gaatgttttg tggttttgat ctttgcatat
     4741 aatttgcttt ttttaaaaga agcgttactt gtagtcactg ggacattaaa tggcttgtat
     4801 atatatgttt ataaaccaaa aaagtgtttg cttacttttc agaagtgccg ttggctaggt
     4861 cttccctctc aatggacagt gagtgaaaac cttggtgtct ttcctgtttt ccacatgtta
     4921 aatccctcga atggatgtgg tgtgctggag aaagcacatg gctgtcggct ctgggaggtc
     4981 ctgatggcct gtctctcccg aaatgatcac tgacattggg gctaagttac acacacagtg
     5041 ggatctccca gggtcatcaa agacgacttg ccagcgtatc ttcgcttcct gaagcgggac
     5101 acctctggac ggggaaggac agctgtgctg acgggcagct tttccttgtt atggttgtaa
     5161 agcgttgcag cctaggttgt aaggttgtga atgtttttac agtcttgttt atcagttcct
     5221 cgagtcggct ggacccatga agactccaag aatgcagctg tgatggtggt ggttcactct
     5281 tccttctatg tatgtgaatg tagaaacgga gactcatctt cattttcatg cctaaaagtg
     5341 ccttgttgag aaagttccac aggttttaaa aaaatacata tttttgtaca caaagttaaa
     5401 ggggaaatgc actttaaaat cacaagaatg gatgcctttt gtgtggtgta agagagtggt
     5461 ttgtctgaat ctcaaatgca aaaatgtaat aaaggttgaa aa
//
LOCUS       XR_004347886            6639 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746832
            (LOC116746832), transcript variant X1, ncRNA.
ACCESSION   XR_004347886
VERSION     XR_004347886.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6639
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6639
                     /gene="LOC116746832"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746832"
     ncRNA           1..6639
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746832"
                     /product="uncharacterized LOC116746832, transcript variant
                     X1"
                     /db_xref="GeneID:116746832"
ORIGIN      
        1 gcctgagccg actgaagagg ccgggacccg cgccgtcaca gacgccagag gacccttagg
       61 gcggagtcca ggggcacagg aggtggtccg agccgcgtcg atttggtcca gtgttccctg
      121 gtcaagcaac tgtcctgaga tgccgtcctc caaatggcta cccacgctct ctccattgtg
      181 gttctccact cagccagcag atggggaaag aaaaaggaag atcactagag aagaggcagg
      241 cttgaaaggg gagacatcga tttggtccac attccattgg ctagaactca gtcatatggc
      301 caaggggact ggaaaatgta gtgagctgtg tgcccaggaa aaaaaggaaa cactagcaaa
      361 tattcaacta gtttttgcca gctgcaatgg gagctaaatg ttttctggct tatttccaat
      421 gaaaatagag tgcctcagtc cctgtattct aagaaagaca ctgagattca ccttgagtca
      481 caggcacatc cctgaacaga cgaactgacc cggggactgc aatgggctga tggcctcaag
      541 cccaccagag tccacctgtt gaacgagagg tggggttggc tttccctgaa atgtctggac
      601 tgcatgggaa agagattcac agcagctaaa tgtactcagg actctccgat taccactgtc
      661 tttccaattt gggacctggc tgtcatcaat ccagggaaag atattcagga aactttccct
      721 ttaaggttag aagtgctttg aaatctagag catattcctg aaacaccatc gtgtttccgg
      781 aacagacctg ttcagtgaag tttcccaccc ttcactacaa gccctaagtg gtgacagccc
      841 agtgggggcg tggggagaga gagagaggat gtacagaaga gggacaggca ttcagagaca
      901 gaatactggt gctttggtct ctgtctcccc actccagtca gggggcgctt cagagtagag
      961 atcaccatct tttaaccctg tcaaacctgg acactacaca tgtgtgctca gagcaaggta
     1021 ccaattcaac aaacatttta tttagggctt atcatattcc aggctctgtt gttagggaaa
     1081 gcatccccca gtgagaggat caacatatgg aaataattta aatatctatc tatctatcta
     1141 atgactatta gaaaaaccac agaattatct taaaagatga gctagaatca tatgtattga
     1201 cagggaagga tactcgagac ttatgttgag gggaaaaagt ttactaacag tctgtatagt
     1261 atggtccctg ttttgattgt ttttaaagta tagataaatg atcagagttg gatttacggc
     1321 aaggctaagg ctcagaagct cctacttgca gagatcttgt tcaaaactct gaacttaatt
     1381 ttgtattttt cataaagagg gtctccgaaa aagcataagt atgaggtcaa atctgaatca
     1441 ttccctgata tttatataca tgaccaactt tatggccaac cgtggttatc tcaggcagtt
     1501 ggaatgcaga gactttctct tttctatcat cccaaagaat gcctcctgaa attcctttat
     1561 agccatccct tctctgaccc gtaacccctg gccagccctc cctgtgtttc tacacctatc
     1621 tctgagtgag ataactcttg ggctttgtaa acagaagtcc attattcaaa tagtagatac
     1681 tatctctacc ctttgtccca gccaacctat gggacaccct ctctcatcat cttcctccaa
     1741 gttctgcttt tccctgtttc ccagtgacca gtatcacgac cttccacttc attcccttta
     1801 accagtattc ccttaatctc atattgtctg tttctctccc actctgctca ttttctgaca
     1861 aaaagcaagg accaaaaatt acatatatgt gtttctagga cagagacttt atttctcact
     1921 agtgataaaa attttctagc acaataaata tgcctaaaat ctacttaaaa cttaagacaa
     1981 ataaaaatag ctagtaaagt ccataaaacc aacagcagta ctttaattag attatggtgc
     2041 ttttttgcat atgttttcct tatgtggtaa tgtttggtgc ccagagaggc ttagggctat
     2101 ttactgctgt ctaaaattgg ctttttggac cagctacact tccttaagca tgttcacatt
     2161 ttttttattt tgcattacaa atcaaaaatg ctacattcag ccagtagttc agtgcaatta
     2221 gtagactgta aactatttga tcatcatgga atcagtgcag taattatctg tgattaaact
     2281 taatttatgt gaattgaata tgcaagaaat ataatttaac tgtaccctgt attagttcaa
     2341 attaagttca actgcatata atagttagct gttttctctt gcaaagggat tttacaaata
     2401 ctaggcagtt tggggttgcc gtggccaggt gtcccaaatt ctgtaagaac tcaatctcct
     2461 tctggctgtc agctcttata atctctaaag tgtggccctg gtattcatgg tctaggaagg
     2521 taactggctc tccagccatc tcatctatgt tccaggctgg caacagatga ggaagaataa
     2581 acacataaac acttaataag gaggcttcac ccagaatgct gcacagtatt ctcacacctc
     2641 tatggcaaat accccaacat ctgactcagt gagctgttca tgagaatagg aaatgccatc
     2701 ttttaactgg actgcaatgc accaactaaa actttgggat ctcttactaa aggaaaaggg
     2761 gagattaggt tgagtgaaga aatttgcatt ccctgccacg gtcttaacgt aaataatatc
     2821 atgatgattt aaagatgtta tatctcttca taatactttg aattctgtta aaagataaag
     2881 cacataaaaa ccttaataaa agtaaaacct agttcaatca gtatagtgaa tcatcagaat
     2941 ttaaatagat tcatagtgtc agcagtgcac agatgggctg catttgagca gaggttgctt
     3001 ggaaggatgc agaatactca ggaagcaacc acttcttttc cctgtcattg ggaaatgtgt
     3061 aaaagcagaa cttggaggaa gatgatgaga gagggtgtct tatgggctgg ctgggacata
     3121 gagtagagat agtatctact ctttgaacgg tccgtggtca tgaagatctg gaaaatgcat
     3181 atcagatctg cgtgtttgac tgtggaattc agtgctggag gacagaaaga agcagaaggt
     3241 aaggttcctg tcccaaaagg cgtttccatt taggctggga aacaagttca ataaatcctt
     3301 caacttttca tgtattcagt atacaagagc tctcaataca gtgatagaag acaatccaca
     3361 agtcggtgtg tgattttttt tttttccagt caaatgcata gacgattggt gctgtaagtg
     3421 attgcatgtg ttctgctgat gaggcagtaa gagtgtaact aaaggaagaa gaggtttgaa
     3481 aaggagtggg taaggaaatc caggttgcag attggggagt taacatttat tgagctccgc
     3541 tctgtgtcag gcactttgtc aggtgcttta tgtaatctgt gggataatta ctgttattcc
     3601 atttttcaga tgaggagtct gaggctcaca tcagtaattt cttgcggttg agcagccagc
     3661 caggagagag agcagaattt gaatgcgggt ctgtcccaaa atatatgctg tttccattac
     3721 agaattccac cccggatagg acttggggtg ggatagtgtt gtataaatgt gttgtcatcc
     3781 aagcctcact agctgggagg ttctggatga ggtcatattt atatattcag atttcactag
     3841 ctcaaagtct gtatcactca tttaagaatt ctgattttca cccagtgaat ccatctgcac
     3901 tactacccgc attggcctct tccatctggg aaaactcgcc ctcagtgacc ttgactgctc
     3961 catgcagaac cccccccacc ccaccatgat tctctcggtc ctgagagttt agcagtttct
     4021 tttactgtca gaagccacag tgattccatg acatagcagg gttgattgat tcactcgaat
     4081 atttatcagg ggctctgtga gatggagagg tgagctagag ctctgaacct ggctctgaca
     4141 cagaggcagg tgttggttta gtgagaggag gccaacaata agcatgataa ttgctaattg
     4201 tggtaaatgc tattaagaaa ataaacggag cagtgtgata ggaaataatg acaggcagtg
     4261 ggagggggtt agggcttcga aggagacagc catttctttt cataaagcca gtttgttttt
     4321 tttttaactc cttggagcaa tcattcgtat cagggtagct gggccaatat aaaatgaagc
     4381 agcagttatg atgccttccc tggagccatg attcccctct aaatcccacg cacagtgcag
     4441 aatcctacca acctctcctt cgtccctcca atggttctga aacttggcta agttatcgga
     4501 atcactggga gatctttcag aatacctggg ctctgccttt agagactaga gttagttggt
     4561 ttgggatggg tttcaggcat gaattttaaa gttcccaggt gattctagta tgtaggcaag
     4621 agtgcaaatc actggtcaga gcagtggttc tcaaaccact tgagcatcag aattgtctag
     4681 agggactagt cattgctctg ctgcctcgtt tccattgcct ggcccagggt catggcctgg
     4741 gtgcctcaaa ctcacagtgg ctcctgattt tacgatgtgt ggttctcata cttagggcag
     4801 tgactctcaa cctttaatgg gcatatgaat catctgggga acttgataaa atgcagttct
     4861 gagtggttgc cagtggctgg ggcggggatg gggcgagaag gagatgggga gttgttttca
     4921 tgggtacaga gtttcagttt cgcaggatgg aaagacttct gggaattggt tgcacaaaaa
     4981 tgtgaatata cttaacacta ctgaactgta cactttaaaa aacagttaag atggtaaatt
     5041 ctgtgttatg catattttag cacagttgtt taaaagtgca gattcagtag gtctggggca
     5101 gggcctgagt gtctgcaatt cttataagct ccgaaatggt gccggtggga acgcagctgc
     5161 agaagcaagg gttcagggtg catcaggatt acctggggga cttggtttaa tgtaggctct
     5221 tcatcctcat ctctgagatc ttgattcagc atgcctgaga tggggctcag gtgtagctgc
     5281 tctaaacacc ccactttaag aaataatctt ccatgggctt cacttccaaa ggtgagatcg
     5341 attatttaca gatgcaaaac tgagtctggc attttatttc atgtttgaaa taagaatgta
     5401 tgtttcacag ctttataaag tgcagtggct tccctagttc agcgggctag gaatggaaaa
     5461 gaccttcagc tgcaagaggg actggccccc agaatccagg gtcgttggca ggcgctgggt
     5521 tgatgactgt catggaactc ctggaatagc gtgtccccca gctgatcaaa cctcagggcc
     5581 ccgcagtatg cgatatctga ctgtgtgttc agcaggcctc ctgtcctatc accaaaccgc
     5641 ccccacccca gcccatctcc agttcagagc aagacccgac agccaaccaa cccagatcta
     5701 ctcctggcaa gtctatggag ccccagaatc atgcagagct ctaacggtta ctattaacgt
     5761 gcgtttgctc tatggcagca ccttagcgcc atcatctcat gtaatcctct caacaccctg
     5821 tgaggtactt gctgttatta tcaccatttt atgggtgagg aaatactctg ctaagctgag
     5881 taacttaccc aaagtcatag ggccagtatg tgacagagcc aggatttgaa accagctttg
     5941 tctggcaaag atgcccaggc tctttacact gtggtgaatg gctttccatg ggcctggaat
     6001 ttgggccaag agtggactgc agctcaggag cactaattag cataagagct gtaacctgta
     6061 tgcctacgga gagccctcca ttcaaagtac gcttctccac gtggtgatca ttttgccgtg
     6121 tacaaaaata ccagggcact ctgttgtaca cctgaaacta atattgtaag tcaattatac
     6181 tttaataaac aaacgaaaac aaagtgaaac taatacaata ttgtaagtca attatgcttc
     6241 aataaacaaa accaaagtga actaatataa cattgtaagt tgattatact tcaataaaca
     6301 aacaacaaag tacactgact gtcttcaaca catggctgtc cacagcagaa tttctattta
     6361 gagtaattcg cgctaagggg taaataaggc ttagccttcc tagcatgtgt tgaaaagagt
     6421 aacttattaa cctaaatggg tccatggttt gatagaaagt gtaagagaaa ttcatggggt
     6481 gtgctggggg ctgagtatgg agggactttc ctttagataa gatctttgaa actgaaaggg
     6541 accatatgtc atctggtccc atttttcgtt gttaaagatg agtttacata aagcaaattg
     6601 acgatcgaac atgttgtttt tttttttttt tttaattta
//
LOCUS       XR_004347887            6758 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746832
            (LOC116746832), transcript variant X2, ncRNA.
ACCESSION   XR_004347887
VERSION     XR_004347887.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6758
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6758
                     /gene="LOC116746832"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746832"
     ncRNA           1..6758
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746832"
                     /product="uncharacterized LOC116746832, transcript variant
                     X2"
                     /db_xref="GeneID:116746832"
ORIGIN      
        1 ctgagggccg agcggccccg tccccgccgc cctgagtaga cccggtgccc gcggaggccg
       61 aactcccggc tggggcgtct cttccctccg ctggcgctga gcaaccccgg agcccgcggg
      121 gagggcggtg cgaccgccga ccccgcccac ggccttcaca ccgccctggg gatggacccg
      181 gcgggcggaa gcccagtccg ccctcggggc cgcgcgtcag tttggtccag tgttccctgg
      241 tcaagcaact gtcctgagat gccgtcctcc aaatggctac ccacgctctc tccattgtgg
      301 ttctccactc agccagcaga tggggaaaga aaaaggaaga tcactagaga agaggcaggc
      361 ttgaaagggg agacatcgat ttggtccaca ttccattggc tagaactcag tcatatggcc
      421 aaggggactg gaaaatgtag tgagctgtgt gcccaggaaa aaaaggaaac actagcaaat
      481 attcaactag tttttgccag ctgcaatggg agctaaatgt tttctggctt atttccaatg
      541 aaaatagagt gcctcagtcc ctgtattcta agaaagacac tgagattcac cttgagtcac
      601 aggcacatcc ctgaacagac gaactgaccc ggggactgca atgggctgat ggcctcaagc
      661 ccaccagagt ccacctgttg aacgagaggt ggggttggct ttccctgaaa tgtctggact
      721 gcatgggaaa gagattcaca gcagctaaat gtactcagga ctctccgatt accactgtct
      781 ttccaatttg ggacctggct gtcatcaatc cagggaaaga tattcaggaa actttccctt
      841 taaggttaga agtgctttga aatctagagc atattcctga aacaccatcg tgtttccgga
      901 acagacctgt tcagtgaagt ttcccaccct tcactacaag ccctaagtgg tgacagccca
      961 gtgggggcgt ggggagagag agagaggatg tacagaagag ggacaggcat tcagagacag
     1021 aatactggtg ctttggtctc tgtctcccca ctccagtcag ggggcgcttc agagtagaga
     1081 tcaccatctt ttaaccctgt caaacctgga cactacacat gtgtgctcag agcaaggtac
     1141 caattcaaca aacattttat ttagggctta tcatattcca ggctctgttg ttagggaaag
     1201 catcccccag tgagaggatc aacatatgga aataatttaa atatctatct atctatctaa
     1261 tgactattag aaaaaccaca gaattatctt aaaagatgag ctagaatcat atgtattgac
     1321 agggaaggat actcgagact tatgttgagg ggaaaaagtt tactaacagt ctgtatagta
     1381 tggtccctgt tttgattgtt tttaaagtat agataaatga tcagagttgg atttacggca
     1441 aggctaaggc tcagaagctc ctacttgcag agatcttgtt caaaactctg aacttaattt
     1501 tgtatttttc ataaagaggg tctccgaaaa agcataagta tgaggtcaaa tctgaatcat
     1561 tccctgatat ttatatacat gaccaacttt atggccaacc gtggttatct caggcagttg
     1621 gaatgcagag actttctctt ttctatcatc ccaaagaatg cctcctgaaa ttcctttata
     1681 gccatccctt ctctgacccg taacccctgg ccagccctcc ctgtgtttct acacctatct
     1741 ctgagtgaga taactcttgg gctttgtaaa cagaagtcca ttattcaaat agtagatact
     1801 atctctaccc tttgtcccag ccaacctatg ggacaccctc tctcatcatc ttcctccaag
     1861 ttctgctttt ccctgtttcc cagtgaccag tatcacgacc ttccacttca ttccctttaa
     1921 ccagtattcc cttaatctca tattgtctgt ttctctccca ctctgctcat tttctgacaa
     1981 aaagcaagga ccaaaaatta catatatgtg tttctaggac agagacttta tttctcacta
     2041 gtgataaaaa ttttctagca caataaatat gcctaaaatc tacttaaaac ttaagacaaa
     2101 taaaaatagc tagtaaagtc cataaaacca acagcagtac tttaattaga ttatggtgct
     2161 tttttgcata tgttttcctt atgtggtaat gtttggtgcc cagagaggct tagggctatt
     2221 tactgctgtc taaaattggc tttttggacc agctacactt ccttaagcat gttcacattt
     2281 tttttatttt gcattacaaa tcaaaaatgc tacattcagc cagtagttca gtgcaattag
     2341 tagactgtaa actatttgat catcatggaa tcagtgcagt aattatctgt gattaaactt
     2401 aatttatgtg aattgaatat gcaagaaata taatttaact gtaccctgta ttagttcaaa
     2461 ttaagttcaa ctgcatataa tagttagctg ttttctcttg caaagggatt ttacaaatac
     2521 taggcagttt ggggttgccg tggccaggtg tcccaaattc tgtaagaact caatctcctt
     2581 ctggctgtca gctcttataa tctctaaagt gtggccctgg tattcatggt ctaggaaggt
     2641 aactggctct ccagccatct catctatgtt ccaggctggc aacagatgag gaagaataaa
     2701 cacataaaca cttaataagg aggcttcacc cagaatgctg cacagtattc tcacacctct
     2761 atggcaaata ccccaacatc tgactcagtg agctgttcat gagaatagga aatgccatct
     2821 tttaactgga ctgcaatgca ccaactaaaa ctttgggatc tcttactaaa ggaaaagggg
     2881 agattaggtt gagtgaagaa atttgcattc cctgccacgg tcttaacgta aataatatca
     2941 tgatgattta aagatgttat atctcttcat aatactttga attctgttaa aagataaagc
     3001 acataaaaac cttaataaaa gtaaaaccta gttcaatcag tatagtgaat catcagaatt
     3061 taaatagatt catagtgtca gcagtgcaca gatgggctgc atttgagcag aggttgcttg
     3121 gaaggatgca gaatactcag gaagcaacca cttcttttcc ctgtcattgg gaaatgtgta
     3181 aaagcagaac ttggaggaag atgatgagag agggtgtctt atgggctggc tgggacatag
     3241 agtagagata gtatctactc tttgaacggt ccgtggtcat gaagatctgg aaaatgcata
     3301 tcagatctgc gtgtttgact gtggaattca gtgctggagg acagaaagaa gcagaaggta
     3361 aggttcctgt cccaaaaggc gtttccattt aggctgggaa acaagttcaa taaatccttc
     3421 aacttttcat gtattcagta tacaagagct ctcaatacag tgatagaaga caatccacaa
     3481 gtcggtgtgt gatttttttt ttttccagtc aaatgcatag acgattggtg ctgtaagtga
     3541 ttgcatgtgt tctgctgatg aggcagtaag agtgtaacta aaggaagaag aggtttgaaa
     3601 aggagtgggt aaggaaatcc aggttgcaga ttggggagtt aacatttatt gagctccgct
     3661 ctgtgtcagg cactttgtca ggtgctttat gtaatctgtg ggataattac tgttattcca
     3721 tttttcagat gaggagtctg aggctcacat cagtaatttc ttgcggttga gcagccagcc
     3781 aggagagaga gcagaatttg aatgcgggtc tgtcccaaaa tatatgctgt ttccattaca
     3841 gaattccacc ccggatagga cttggggtgg gatagtgttg tataaatgtg ttgtcatcca
     3901 agcctcacta gctgggaggt tctggatgag gtcatattta tatattcaga tttcactagc
     3961 tcaaagtctg tatcactcat ttaagaattc tgattttcac ccagtgaatc catctgcact
     4021 actacccgca ttggcctctt ccatctggga aaactcgccc tcagtgacct tgactgctcc
     4081 atgcagaacc ccccccaccc caccatgatt ctctcggtcc tgagagttta gcagtttctt
     4141 ttactgtcag aagccacagt gattccatga catagcaggg ttgattgatt cactcgaata
     4201 tttatcaggg gctctgtgag atggagaggt gagctagagc tctgaacctg gctctgacac
     4261 agaggcaggt gttggtttag tgagaggagg ccaacaataa gcatgataat tgctaattgt
     4321 ggtaaatgct attaagaaaa taaacggagc agtgtgatag gaaataatga caggcagtgg
     4381 gagggggtta gggcttcgaa ggagacagcc atttcttttc ataaagccag tttgtttttt
     4441 ttttaactcc ttggagcaat cattcgtatc agggtagctg ggccaatata aaatgaagca
     4501 gcagttatga tgccttccct ggagccatga ttcccctcta aatcccacgc acagtgcaga
     4561 atcctaccaa cctctccttc gtccctccaa tggttctgaa acttggctaa gttatcggaa
     4621 tcactgggag atctttcaga atacctgggc tctgccttta gagactagag ttagttggtt
     4681 tgggatgggt ttcaggcatg aattttaaag ttcccaggtg attctagtat gtaggcaaga
     4741 gtgcaaatca ctggtcagag cagtggttct caaaccactt gagcatcaga attgtctaga
     4801 gggactagtc attgctctgc tgcctcgttt ccattgcctg gcccagggtc atggcctggg
     4861 tgcctcaaac tcacagtggc tcctgatttt acgatgtgtg gttctcatac ttagggcagt
     4921 gactctcaac ctttaatggg catatgaatc atctggggaa cttgataaaa tgcagttctg
     4981 agtggttgcc agtggctggg gcggggatgg ggcgagaagg agatggggag ttgttttcat
     5041 gggtacagag tttcagtttc gcaggatgga aagacttctg ggaattggtt gcacaaaaat
     5101 gtgaatatac ttaacactac tgaactgtac actttaaaaa acagttaaga tggtaaattc
     5161 tgtgttatgc atattttagc acagttgttt aaaagtgcag attcagtagg tctggggcag
     5221 ggcctgagtg tctgcaattc ttataagctc cgaaatggtg ccggtgggaa cgcagctgca
     5281 gaagcaaggg ttcagggtgc atcaggatta cctgggggac ttggtttaat gtaggctctt
     5341 catcctcatc tctgagatct tgattcagca tgcctgagat ggggctcagg tgtagctgct
     5401 ctaaacaccc cactttaaga aataatcttc catgggcttc acttccaaag gtgagatcga
     5461 ttatttacag atgcaaaact gagtctggca ttttatttca tgtttgaaat aagaatgtat
     5521 gtttcacagc tttataaagt gcagtggctt ccctagttca gcgggctagg aatggaaaag
     5581 accttcagct gcaagaggga ctggccccca gaatccaggg tcgttggcag gcgctgggtt
     5641 gatgactgtc atggaactcc tggaatagcg tgtcccccag ctgatcaaac ctcagggccc
     5701 cgcagtatgc gatatctgac tgtgtgttca gcaggcctcc tgtcctatca ccaaaccgcc
     5761 cccaccccag cccatctcca gttcagagca agacccgaca gccaaccaac ccagatctac
     5821 tcctggcaag tctatggagc cccagaatca tgcagagctc taacggttac tattaacgtg
     5881 cgtttgctct atggcagcac cttagcgcca tcatctcatg taatcctctc aacaccctgt
     5941 gaggtacttg ctgttattat caccatttta tgggtgagga aatactctgc taagctgagt
     6001 aacttaccca aagtcatagg gccagtatgt gacagagcca ggatttgaaa ccagctttgt
     6061 ctggcaaaga tgcccaggct ctttacactg tggtgaatgg ctttccatgg gcctggaatt
     6121 tgggccaaga gtggactgca gctcaggagc actaattagc ataagagctg taacctgtat
     6181 gcctacggag agccctccat tcaaagtacg cttctccacg tggtgatcat tttgccgtgt
     6241 acaaaaatac cagggcactc tgttgtacac ctgaaactaa tattgtaagt caattatact
     6301 ttaataaaca aacgaaaaca aagtgaaact aatacaatat tgtaagtcaa ttatgcttca
     6361 ataaacaaaa ccaaagtgaa ctaatataac attgtaagtt gattatactt caataaacaa
     6421 acaacaaagt acactgactg tcttcaacac atggctgtcc acagcagaat ttctatttag
     6481 agtaattcgc gctaaggggt aaataaggct tagccttcct agcatgtgtt gaaaagagta
     6541 acttattaac ctaaatgggt ccatggtttg atagaaagtg taagagaaat tcatggggtg
     6601 tgctgggggc tgagtatgga gggactttcc tttagataag atctttgaaa ctgaaaggga
     6661 ccatatgtca tctggtccca tttttcgttg ttaaagatga gtttacataa agcaaattga
     6721 cgatcgaaca tgttgttttt tttttttttt ttaattta
//
LOCUS       XR_004347888             455 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746833
            (LOC116746833), ncRNA.
ACCESSION   XR_004347888
VERSION     XR_004347888.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..455
                     /gene="LOC116746833"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746833"
     ncRNA           1..455
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746833"
                     /product="uncharacterized LOC116746833"
                     /db_xref="GeneID:116746833"
ORIGIN      
        1 gtgccccctg cattggaagg gtggagtctt aaccactgga ccaccaggaa agtacctgag
       61 atacggtacc tggaacagca gtagccacct tgcagccctg gggaagccca gctggaacaa
      121 tgccagtgcc ctgaggatga ccgagccagg aggacttagg gctgtggtgg cattgcaaag
      181 tcaccggctt aaccaaaccc aaggagttct accaggacct cttttatgtt tctttggtct
      241 tccagactac ccatcaagta attgagaagc tataaataaa cattagaagc aagcccctaa
      301 ttgatcaact ttcaggtttt ccttgtgcca aatgaggagc gtctttgtcc tttgggagtg
      361 caggcagaag gagcacccct tgatggtgga gttttgacat ttaaataata aacactaaaa
      421 cttaccaaag gggcttccct ggtggcgcag tggtt
//
LOCUS       XR_004347889             706 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746834
            (LOC116746834), ncRNA.
ACCESSION   XR_004347889
VERSION     XR_004347889.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..706
                     /gene="LOC116746834"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746834"
     ncRNA           1..706
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746834"
                     /product="uncharacterized LOC116746834"
                     /db_xref="GeneID:116746834"
ORIGIN      
        1 tctccatctt gcttctttgg agccagggga aagcaggagc agccagcatg caggcgacca
       61 tttacccttt ccaggcctgg gagagagaaa agtcagctga cccaaggccc tgggccctca
      121 gctctcatga gctgacatcc gagaatcatt ccatccctat gatttgatcg tccatcatga
      181 ataaaagatg ctataggacg agaggaaatt cctgttgcca tcctcaggaa ggagctgagc
      241 tcaaggacac gacagacata ggaaacattt ggcaaaagac tgaacccaag gagtgagagg
      301 gaagcttagc ctccaaggct ggacacaggg tctctcaggt gggagcaccc tgtccacaaa
      361 ctcagcactt cacgatggct gagtgtgggt gcggactgtg gaagcaagca gggaagggtg
      421 agagtgaggc cagttggaga tggcagacca agccattggc ctctggggca gcactcctta
      481 ccatctcatt ggccttactc gctggtccca cgtgtgggct gcgcttctgc aagctgcatg
      541 gtcaacgctt tgacaggccg ctgcggggaa gcaggatgaa cacagcactt cgggtgtgaa
      601 gacaggtgtt cagatcacaa ctctgctact ggctaatgat atgctgttgg gtgagtcaac
      661 tgagcctcag tttatttgtc ggtgaaatgg gataataatc ccccca
//
LOCUS       XR_004347890             380 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746835
            (LOC116746835), ncRNA.
ACCESSION   XR_004347890
VERSION     XR_004347890.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..380
                     /gene="LOC116746835"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746835"
     ncRNA           1..380
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746835"
                     /product="uncharacterized LOC116746835"
                     /db_xref="GeneID:116746835"
ORIGIN      
        1 aaggcccttt gttgtgtcca ggtttctgtg cttatacagc aggatgccgg aatcttaaaa
       61 ggaagcagaa ggctgaagac taaaggtcac cctgcaaccc gacactgttt ttcttctgat
      121 cccgttactc acgctgcact ctggtaacgt actggctttt ctgggcctgg aaaaccgaac
      181 ctgctgacca ccgaagcacc aaggcacgtc ttggaagtcc acgggacact cagaaagatg
      241 cctatttcct gtcaggacag cacagaggat gcctgctcta agggaagata agctctccag
      301 gagaggggga gaaaatccca tctccaccct acagtgcagg ggaccatcgg ccttttcagg
      361 agcttggcgt ggcgcgttga
//
LOCUS       XM_032618558            2023 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus store-operated calcium entry associated
            regulatory factor (SARAF), mRNA.
ACCESSION   XM_032618558
VERSION     XM_032618558.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2023
                     /gene="SARAF"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746836"
     CDS             241..1242
                     /gene="SARAF"
                     /codon_start=1
                     /product="store-operated calcium entry-associated
                     regulatory factor"
                     /protein_id="XP_032474449.1"
                     /db_xref="GeneID:116746836"
                     /translation="MVAASGPEAAGRCALFSLLLLLLIAGSARGWEDPDRVLLRDIKA
                     LTLHYDRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQCQNKGWDGYDVQWECKTDLD
                     IAYKFGKTVVSCEGYESSEDQYVLRGSCGLEYHLDYTELGLKKSRESGRNHGFNSFSD
                     YYNKLYSRESCSISGVLTIVVLLAIAFGVYKFFLSNGHDSPPPYSEYPPYSHRYQRFT
                     NSEGPSPAGFKPEFTGPHGATSGFGSAFTGQQGHKNSGPGFWTGLGTGGILGYLFGSN
                     RAATPFSDSWYYPSSYSSSWNSRAYSPLRGDPGSYSACSSSEPKTRTASGYGGTRRR"
     misc_feature    310..1239
                     /gene="SARAF"
                     /note="SOCE-associated regulatory factor of calcium
                     homoeostasis; Region: SARAF; pfam06682"
                     /db_xref="CDD:461985"
ORIGIN      
        1 cagccgcgct gggctccaga ggcggggaca gcagcgacca ctccagttcc cccacgcgcc
       61 gccgctgtag tgacgtcaga ctggcgcacg gaccttccct gcagcagggg tcctgcggta
      121 gaccttcctt tttccgcggc ggaagctgcc ggcgtcggtg cttaacggta cgcggccttc
      181 cgcagccagg gttccgacct gcgagctccc gacagccgcg cgtcatcttc accgagcgcc
      241 atggtggcgg ccagcgggcc ggaagcggct gggcgctgcg ctctgttcag cctccttttg
      301 cttctgttga tcgcgggctc tgcccggggc tgggaagacc ctgaccgagt attgttgcgg
      361 gatataaaag ctcttaccct ccactatgac cgctatacta cttcccgtag gttggatccg
      421 atcccacagt tgaaatgtgt tggaggcaca gctggatgtg attcttatac ccccaaagtc
      481 atacagtgtc agaacaaagg ctgggatggt tatgatgtac agtgggaatg taagaccgat
      541 ttagatatcg cttacaaatt tggaaaaact gtggtgagct gtgaaggcta tgaatcctct
      601 gaagaccagt atgtactgag aggttcctgt ggcttggagt atcacttaga ttacacggaa
      661 cttggcctga aaaaatcgag agagtctgga agaaaccatg gctttaactc tttctctgat
      721 tattataata agttgtactc ccgagaatct tgtagcatca gtggagtgct taccatcgtg
      781 gtgctacttg ctattgcctt tggagtttat aaattcttcc ttagtaatgg tcatgattct
      841 cctccaccat attctgagta tcctccgtat tcccatcgtt atcagagatt caccaactct
      901 gaaggaccct ctcctgcagg ctttaagcct gagttcacag gaccgcatgg tgcaacttct
      961 ggttttggca gtgctttcac tggacaacaa ggacataaaa attcaggacc agggttctgg
     1021 actggcttgg gaactggagg aatattagga tatttgtttg gcagcaatag agcagcaaca
     1081 cccttttctg actcgtggta ctacccatcc tcatactcca gctcgtggaa tagtcgtgct
     1141 tattcaccac ttcgtggaga cccaggaagc tactcagcgt gttcaagctc agagccaaaa
     1201 accagaacag cgtcaggata tggtggtacc agaagacgat aagaaagtaa aaagttggga
     1261 tcaaacattg gatgcaaaac ttctgatttt tcatcacttt ctcttataaa acgtgcccct
     1321 tgctaacaac tgggaaaagg gaatatgcaa aagttctgtg gtgttttgtc ctgtatagct
     1381 ttttgtgttc tgttatttga ggctaggagt tgacatatga caaaatgctt atctagagaa
     1441 tcatgtttgt gtaacatgca gatgtatatt atagtttttg aaattgatga ctactgtaga
     1501 atgctgagaa tgtactgtgt gatttctgac acctgtgatg ccataagaag cattaagaat
     1561 gaaggcttta taccaataga cactgagtcc agaaattttc agtcttaggt ggttttagtt
     1621 gttgattcat tacatcatag aagcgataat aatctatttg gtatgtgtta ttgggtgttt
     1681 gctgttcttc aaacatttaa accaaacttt ggactactaa ttatacttcc ttgtgtgttt
     1741 tgatcacttc tgagctcagg agctttgaac ctgtcagtgg tgtgtggggt tctggtaagt
     1801 gagaactacc tttttaggaa aaggtagaaa ataagtatct agaaggttgt tgtgaatggc
     1861 agtgtgctga caaaaatgct tgaagcctcc atattcattt ttttaagaag taaagttcaa
     1921 gtgcttcagc aaaggttttc taataacaga agcatgtagt tctctgtgga atctcagatg
     1981 ttgtagcagt ctgtgtcaat cttacattaa aatgacagaa aaa
//
LOCUS       XM_032618559            1204 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus beta-citrylglutamate synthase B-like
            (LOC116746837), mRNA.
ACCESSION   XM_032618559
VERSION     XM_032618559.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1204
                     /gene="LOC116746837"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 Proteins, and 48%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746837"
     CDS             44..1204
                     /gene="LOC116746837"
                     /codon_start=1
                     /product="beta-citrylglutamate synthase B-like"
                     /protein_id="XP_032474450.1"
                     /db_xref="GeneID:116746837"
                     /translation="MCSSVAAKLWFLTDRRIREDYPQKEILRAFKAKCCEEELDFRAV
                     VMDDVVLTAEQGNLGLRIKGELITAYPQVVVVRVPTPCAQSDSDITVLRHLEKMGCRW
                     MNRPQAILNCGNKFWTFQELAGHGVPLPDTFSYGCHENFAKMIDEAEVLEFPMVVKNT
                     RGHRGKAVFLARDKHHWADLSHLIRHEAPYLFQKCVKESHGRDVRVIVVGGRAVGTML
                     RCSTDGRMQSNCSLGGVQMMCSLSEHGKQLAIQVSNILGMNVCGIDLLMKDNGSFCVC
                     EASANVGLIRFDKACDLDVAGITADYTASLLPSGRLTWRMSLLSVVSMASETSEPELG
                     PPANTAVDNLSTSSSSVDSDPETAERELLTKLAGGLSNGNQLLANEIKLLVE"
     misc_feature    65..949
                     /gene="LOC116746837"
                     /note="alpha-L-glutamate ligase, RimK family; Region:
                     rimK_fam; TIGR00768"
                     /db_xref="CDD:273261"
ORIGIN      
        1 caggaggaag taatcccaga aaaggaagaa caggcagatc aagatgtgta gctctgtggc
       61 cgccaagttg tggtttttga cagatcgtcg aatcagggaa gactatcctc aaaaagagat
      121 cttacgagcg ttcaaggcca aatgttgtga ggaggaactg gactttaggg ctgtggtgat
      181 ggatgacgtg gtgctgacag ctgagcaagg aaacctgggt cttcgtatca aaggagaact
      241 aattactgct taccctcagg tggtggtagt gagagtacca accccttgcg cgcaaagtga
      301 tagtgacatc actgttttgc gccatctaga gaagatggga tgcaggtgga tgaaccgacc
      361 tcaagccatc ctgaactgtg gtaataagtt ctggacgttt caagagttgg caggtcacgg
      421 tgttcctctg ccagatacct tctcttatgg ttgtcatgaa aattttgcta aaatgattga
      481 tgaagcagaa gtactggagt tcccaatggt ggtgaagaat acacggggcc atagaggcaa
      541 agcggttttc ttggctcgcg ataagcacca ttgggctgat ctaagccatc ttattcgcca
      601 tgaagctcca tacctgtttc agaagtgtgt taaagagtct catggaaggg atgtacgtgt
      661 cattgttgtg ggaggccgtg cggttggcac catgttacgc tgttcaacag atgggaggat
      721 gcaaagcaac tgctcactgg gtggtgtaca gatgatgtgc tcattgagtg aacacgggaa
      781 acagctagct atccaggtgt ctaatatcct gggaatgaat gtgtgtggca ttgacctgtt
      841 gatgaaagac aacggctcct tctgtgtctg cgaggccagt gcaaatgtag gtttgataag
      901 gtttgataag gcttgtgatc tggatgtagc tggtatcaca gcagactata ccgcctccct
      961 tctgccctct ggccggctca cctggcgtat gtccctgctc tctgtggtgt ccatggccag
     1021 tgagactagt gagccggagc tgggcccccc agccaacact gctgtcgaca acctgagcac
     1081 aagttccagc tctgttgaca gcgaccccga aaccgcagag cgagagctgc tcaccaagct
     1141 cgcagggggc ctatccaacg gaaaccaact gctagccaat gaaatcaaac tcctggtgga
     1201 gtga
//
LOCUS       XM_032618560            7328 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 7 member 2
            (SLC7A2), transcript variant X1, mRNA.
ACCESSION   XM_032618560
VERSION     XM_032618560.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7328
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7328
                     /gene="SLC7A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 19 long SRA reads, 18
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746840"
     CDS             275..2275
                     /gene="SLC7A2"
                     /codon_start=1
                     /product="cationic amino acid transporter 2 isoform X1"
                     /protein_id="XP_032474451.1"
                     /db_xref="GeneID:116746840"
                     /translation="MYRVAIFRMIPCRAALSFARCLIRRKIVTLDSLEDTKLCRCLST
                     MDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVP
                     KTGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTFDELLSKQIGQFFRT
                     YFKMNYTGLAEYPDFFAVCLILLLAGLLSFGVKESAWVNKVFTAINILVLLFVMVAGF
                     VKGNVANWKISEEFLKNISASAREPPSENGTSIYGAGGFMPYGFAGTLAGAATCFYAF
                     VGFDCIATTGEEVRNPQKAIPIGIVTSLLVCFMAYFGVSAALTLMMPYYLLDEKSPLP
                     VAFEYVGWGPAKYVVAAGSLCALSTSLLGSIFPMPRVIYAMAEDGLLFKCLAQINSKT
                     KTPIIATLSSGAVAAVMAFLFDLKALVDMMSIGTLLAYSLVAACVLILRYQPGLSYEQ
                     PKYCPEKEALGSCANTASKSASQVTALPGQGFSLRTLVSPSLLPTKQSASLVSFLVGF
                     LAFLILGLSILTTRGVHTIARLEAWSLALLVLLLVLCIAIVLIIWRQPQNQQKVAFMV
                     PFLPFLPAFSILVNIYLMVQLSADTWIRFSIWMALGFLIYFAYGIRHSLEGNSRDDDD
                     DEDIYSDNINAATEEKSAIQANDHHQRNLSLPFIFHEKTSEC"
     misc_feature    311..2122
                     /gene="SLC7A2"
                     /note="cationic amino acid transport permease; Region:
                     2A0303; TIGR00906"
                     /db_xref="CDD:273330"
ORIGIN      
        1 cggtaggcgg ccttgcacgg cgacgccgcg gttccctttg gccgccctgt tcccgagggg
       61 ccctgtgcac cctcgtgcgg gaggaccggc cgggcctccc caccccgccc tacgcactgg
      121 cgggtccccg aagtcgcctg ccgctcgctt gaggctcttg ggttacatat aggacaccgc
      181 tcggagctct ggaagtcttt tcacaccctg acctgcccgg gactggtagg acaggaaatt
      241 gcaaacattt gtgcttgtga tcttcttcta gaagatgtac agggttgcca tcttcagaat
      301 gattccctgc agagcagcgc tgtcttttgc gcgatgtctg atccggagaa aaatcgtcac
      361 tctggacagt ctagaagata ccaaactgtg ccgctgctta tccaccatgg acctcattgc
      421 cctgggcgtt ggaagcactc tgggggccgg agtttatgtc cttgctggtg aggttgccaa
      481 agcggattct ggccccagca tcgtggtctc cttcctcatc gctgcgctgg cttccgtgat
      541 ggcaggccta tgctatgctg aatttggggc ccgagttccc aagactgggt ctgcctattt
      601 gtacacttac gttactgtcg gagaactgtg ggccttcatc actggctgga atctcatttt
      661 atcttatgtg ataggaacgt caagtgttgc aagggcttgg agtggcacct ttgatgaact
      721 tcttagcaaa cagattggtc agtttttcag gacatacttc aaaatgaatt atactggcct
      781 tgcagagtat cctgactttt ttgctgtgtg ccttatatta cttctagcag gtcttttatc
      841 ttttggagta aaagagtctg cttgggtgaa taaagtcttc acagccatta atatcctggt
      901 ccttctgttt gttatggtcg ctgggtttgt gaaaggaaat gtggcaaact ggaagattag
      961 tgaagagttt ctcaaaaata tatctgcaag tgccagggag ccaccttctg aaaatggaac
     1021 aagtatctat ggggctggtg gctttatgcc ttatggcttt gcaggaactt tggctggggc
     1081 tgcaacctgc ttttatgcct ttgtgggatt tgactgcatt gcaacaactg gtgaggaagt
     1141 ccggaatcct cagaaagcta ttcctattgg aattgtgact tctctgctcg tttgctttat
     1201 ggcctatttt ggggtctcag cagctttaac actgatgatg ccatactacc tcctcgatga
     1261 gaaaagcccc cttcctgtag catttgagta tgttggatgg ggtccagcca aatatgtcgt
     1321 tgcagcaggc tccctctgtg ctttgtcaac aagtcttctt ggatccattt tcccaatgcc
     1381 tcgtgtaatc tatgctatgg cggaggatgg gttgcttttc aaatgtctag ctcaaatcaa
     1441 ttccaaaacg aagacaccaa taattgctac tttatcatcg ggtgcggtgg cagctgtgat
     1501 ggcatttctt tttgacctga aggccctcgt ggacatgatg tccatcggca cccttctggc
     1561 ctactctctg gtcgcagcct gtgttctcat cctcaggtac cagcctggct tatcttacga
     1621 gcaacccaaa tattgtcctg agaaagaagc tctgggatcg tgtgccaaca ctgcctccaa
     1681 aagcgcgtcc caggtcactg cgctgccagg acagggcttc agcctgcgaa ccctcgtcag
     1741 cccctcgctt ctgcccacaa aacagtcggc ttctctcgtg agctttctgg taggattcct
     1801 cgcatttctc attttgggcc tgagtatttt gaccacgcgt ggagtccaca cgattgccag
     1861 gctggaagcg tggagcctcg ctcttcttgt cctgttgctt gttctctgca ttgccattgt
     1921 gctcatcatt tggaggcagc ctcagaatca gcaaaaagta gcctttatgg ttccgttctt
     1981 accatttttg ccagccttca gcatcctggt gaacatttac ttgatggtcc agttgagtgc
     2041 agacacctgg atcagattta gcatttggat ggcgcttggt ttcctgattt acttcgctta
     2101 tggcattaga cacagcctgg agggtaattc gagggatgac gatgatgatg aagatattta
     2161 ttcagacaac attaatgcag cgacagaaga aaaatctgcc attcaagcaa atgaccatca
     2221 ccaaagaaac ctgagtttac ctttcatatt ccatgaaaag acaagtgaat gctagtacct
     2281 gcacgagcag agctggtcca cagtcttcac gtacatatcc tacacggagt gaaccatgac
     2341 ggatgtcatc gtcatgctag gttgtcatcg gtttgctgca gacacagttc accctaattt
     2401 atacttactc gcctggacag cacctcctca gatggtgaat tatacatcca gggaaaatac
     2461 cctgagctcg ctcctcagtg atgaatgtcc cccaaatagt gggattgtgg gagtgtgtgt
     2521 gtgtacgttt gtatatgctg gggaatatcg atgttaaaag ttgttggtgt tttactatta
     2581 ttgtattgca tttttccagt gttgtcatta atcggtagca tatactgcac atactgaaat
     2641 ggagataatc acggaataga aaaatattct gtatgtgctg ggtgtggttg gggaaatagc
     2701 tgttgctttt ccttattagg ctttattaat gtcaagttag aacatactaa aaatgcattt
     2761 acccatcaca gtgtctgtca ttggtctgga gtaagaggag gggataggaa atgagccttt
     2821 tctacaactt ataagtgcca gcagtggctt tagtacagat ttttcttccg tgaggtgtga
     2881 cagtttgcta aaaccttcgc caataggagt gttcgtgtct gccgggctgc gcagggcagg
     2941 tgtggccctc tgtgtcatca gatgtcaggc acccctttga actgctgtct tctttgagaa
     3001 cagtggtcct taaatgtgag gccttcacct tctgtgaatg atatattccc ccctgccctg
     3061 tcccagtcca gtcagaggct tgggagaggt agtgtgatct acttgggacc ctttgtgcta
     3121 gagagtgagc gcggtcccca tgggtaggaa gctcatgtaa gtggcaaaga tgaggatatg
     3181 tttgaagatc agagtagaca tgtgcttgga caagtagacc ccaagcaccc ctgttttaaa
     3241 agtcagttaa aataagccag tagaatctcc cagatcacac aactgatgga atgattcatg
     3301 cttttttcca ttacttaata aacaatcaca gttcaacttt tttttctaac tcagtagcaa
     3361 attctctttc tactatatgc aaaaaagaag gaaaaaatga agggatacaa ggaaagaaaa
     3421 ttcccctgtt ctgattttaa agtgcctatt cagttattaa agggcatttg acccaatttt
     3481 aggggttcag atctaatttg cctctgatgt ttcttttgga aacagggatg tttttcttcc
     3541 cccatcccat aaattgttta gcacttttta tttcatttat ttttaaatga ccacactaaa
     3601 cctattgata caagctctag tattctacaa aaacccatca gtggtcgggg aatagaatat
     3661 tttggtaaaa tacatggtcg tttaaaacgt caagctgaaa aattaaccaa attgaattaa
     3721 agccatagaa acacaataac ctttgtatga gtaaataatt cgtttttaaa tgtaagattc
     3781 tctaattact gtattttact ttatagggtt ctctaatagt ggactactta tctgcagtgt
     3841 gttttgcttc tcatgaatta tttttcttac aaataattat atggttcact agatgagact
     3901 gagtctaaac acttacatat gtatgggtta tatttccagg aagaacatta tcaagcccag
     3961 gtgaccagct tactccaaag gcaaggaaaa catttatttt ctgacagctt ttccaagaga
     4021 tgtcacttta tttttttcat taaaaagcaa gttatgattg ttaaggagtt tattgtgatt
     4081 aaatatccaa taaacaggta gaaggcctgg gtttctggct gctagtgttg tagcatctct
     4141 gacatagaac tcagtactaa cattccacaa tttccagggt gcacacggta aaatctgaag
     4201 cccagaattc ttttaagctg catgttttac tggagaggaa gagttggcta tacaaggggt
     4261 aaagtatttc tgtaagcact gtgggcctaa tcataagtcc ttgctgttat ttgccgtata
     4321 ctgagaagcc ctttttttct gaaatcattc tagaacaggc ccttcacaca gggaacatga
     4381 agaatttcat atgtgaatat taaaactttt actgtaacaa tatcaagaaa tttgtttaga
     4441 acatgacagg cagctaaaac tattatgccc actgtgttca attaggagca gaatttagtt
     4501 aaaaattatt tttctacctt gaaacacttt acaaatacaa atatctatga aaagatgctt
     4561 tgtcagtgac tatgcttttt ttctgtgaaa agtcaaatgt atgttcgtat gtatgtgtga
     4621 gtgtgtacat atacacgtat atatatgtgt gtgtatattt caaacatcag tgtagaagtc
     4681 agctgggttt aggatggggt ttggaaataa tactgttgtc tagattttaa aaacccaact
     4741 gatggagaaa aaataatgtt ttatattgat aggtatgctt atgcaaaact tttaggtttt
     4801 aaactatttt gaaatatata gcgattttat atgtgtaata ttttctatag atagattctt
     4861 taaggaaaat atatttataa tgtttctaat atgagatcac tgaagtctgg tacattatac
     4921 caggagcttt atgatctgaa atggagttgg gggcgggggc attaggggat ttctgtttat
     4981 tgcttctgct gcaccttttc tgacattgct gtcttggttt gtgcttgtta ggaaaagcca
     5041 gtactaccag gtcttttatc acctctctgt ccctacattt gaatttataa ccttttgaac
     5101 aaaattttgt ttttactttc ctaggattgc caaaatgttc tgtacaggtt ttactagtaa
     5161 tcagtcacac ttatataaag tccttttcag aaattaaaaa atacatatac attctcttaa
     5221 ttgtgactga gtaaaaacag cttgaattac ctttcttttt tgcactagga aatatgctct
     5281 ctgaacattc tcaatggaaa actttaatag tacctttatt ttatactctt aaaaaagaaa
     5341 gatgatttgt gaataacata caaaggccat gcctacccta catttaacta ggtagctatg
     5401 caaatccaag tttaaaaagt atttatgaga aaatttagaa cttttgatgt atactgaaac
     5461 agagtactgc ttaatcacat tttccccaga gatgaatatc aagaaaagac caaaacatca
     5521 tttgaggtat tatatacatt aatgaaaaac taatgatgat atctataaaa ctttactgtc
     5581 atcaaccaca cttggtagaa aatatgtttc agaactacct tcctttaaaa gacaagggcc
     5641 tgtcttcttc aaatttttct gaataaaaga tttttaaact tcttttattt taaatattag
     5701 ccaaaatatc ttctaagtcc tgggtattta caggtagacg ttaaaatctt ttgaattaga
     5761 atttgtattt aacaaactat tttcgaaata tttttgaatg cagggagaat aaggaaaagt
     5821 aatcgcccac caatgctggt agtgccagag ggagcaggtt agtcttagct ttttttcctc
     5881 ttagatcagc acattctgag attataaacc acatgataaa attgtgccaa gattccaact
     5941 ctgacttacg tgtgatgttg cttctgatgt tctctgtctg ggtttctcct gatgtgcttc
     6001 aagcgacagt acaattcaaa ctaaaaacac aatgtccaca gaattttaaa ggattgggtt
     6061 tagagtgtgc gtcatggaat attaatattc acatgattag cgtgactttc ttggggggtt
     6121 gtgattaact gggttttttg gtttgttttt ggtttttgac tagtgccaaa atagtgcctt
     6181 ctctatattt tctacctacg ttttctaact tgtcctaaaa tatcaaagga aaaagtacca
     6241 aagttcatgt aggaactaat gccatcacag gtcatttttc agacatgtag atgtgaaaat
     6301 gaggttgctt aactttgttg tttagctgag tttttttttt tatctccttg tatatcatat
     6361 ttaaacattt tctaatggct ttctggtttc tgaattttga gaggcctgat ctgttactgt
     6421 tgtggttgtt ggtttagtgg ttggttttca taacattcat tgctgttcat atgtacacag
     6481 tttagtcatg ttcatttcaa atgcattttg ttatggctca acccaatggc aaccctgttt
     6541 gctgagagca ctatcttcgc ttttattcat cacggctgaa gccactgcca taatctctgg
     6601 ccttaaagag ccttcactga ccactgacag cagctccacg gggttcataa ccaagaccct
     6661 gggtcaggca gactgcaaag tatgagcgtc tatagctacc ccgttggtgg gggcttgtga
     6721 tgacagggta ggatatgaag tgaaagactt cacatgaaac taaggtagtt tggggtcctt
     6781 aatttcagcc ccaaatagcc catgagtaca aggtaaatga taaggaccaa ggaacctcca
     6841 tgactcatgg aaaggatggc tgcttcctgg aactgcacca ctgcagtttc tgcaccagca
     6901 ctaagagcct tgggcaggaa agtgcgtggg cctcggctca gttggtaaag aaccttgtgt
     6961 tgccaacagg acaggtttct ctggcccgtg cctggttaac aggctcttca tctttggtgc
     7021 ccaattgttt cattgcttta ttttgttatc attgtactta atagaagctg ttgatagggc
     7081 ctaaaaccct gcagaaattc tatgtctgta aaaaccaaca gatacattgg tcttatgcga
     7141 atatagagtt tttttgtgta gtaggtaact ttaaatttaa atgtccttaa tgataatcag
     7201 tgttccttat tacttataaa gttggattat ttttagaatt tgtaatgaat aaaaaccgct
     7261 gctgctttac cactgtaaaa tatgctttct aacatgacca tgtattttta aaataaatta
     7321 taatacga
//
LOCUS       XM_032618561            7189 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 7 member 2
            (SLC7A2), transcript variant X2, mRNA.
ACCESSION   XM_032618561
VERSION     XM_032618561.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7189
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7189
                     /gene="SLC7A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 22 long SRA reads, 18
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746840"
     CDS             160..2136
                     /gene="SLC7A2"
                     /codon_start=1
                     /product="cationic amino acid transporter 2 isoform X2"
                     /protein_id="XP_032474452.1"
                     /db_xref="GeneID:116746840"
                     /translation="MIPCRAALSFARCLIRRKIVTLDSLEDTKLCRCLSTMDLIALGV
                     GSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPKTGSAYLY
                     TYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTFDELLSKQIGQFFRTYFKMNYTG
                     LAEYPDFFAVCLILLLAGLLSFGVKESAWVNKVFTAINILVLLFVMVAGFVKGNVANW
                     KISEEFLKNISASAREPPSENGTSIYGAGGFMPYGFAGTLAGAATCFYAFVGFDCIAT
                     TGEEVRNPQKAIPIGIVTSLLVCFMAYFGVSAALTLMMPYYLLDEKSPLPVAFEYVGW
                     GPAKYVVAAGSLCALSTSLLGSIFPMPRVIYAMAEDGLLFKCLAQINSKTKTPIIATL
                     SSGAVAAVMAFLFDLKALVDMMSIGTLLAYSLVAACVLILRYQPGLSYEQPKYCPEKE
                     ALGSCANTASKSASQVTALPGQGFSLRTLVSPSLLPTKQSASLVSFLVGFLAFLILGL
                     SILTTRGVHTIARLEAWSLALLVLLLVLCIAIVLIIWRQPQNQQKVAFMVPFLPFLPA
                     FSILVNIYLMVQLSADTWIRFSIWMALGFLIYFAYGIRHSLEGNSRDDDDDEDIYSDN
                     INAATEEKSAIQANDHHQRNLSLPFIFHEKTSEC"
     misc_feature    172..1983
                     /gene="SLC7A2"
                     /note="cationic amino acid transport permease; Region:
                     2A0303; TIGR00906"
                     /db_xref="CDD:273330"
ORIGIN      
        1 tgcagcgcgg cggccccggc gctagtctcg gcgcggacca gcgaggcggc ggccgctcca
       61 gcagcctccc cgagccgcga gccccgacac tctcctgccg ctcgcccatc cccgacccct
      121 cgtcgcggcc ctcgcgctgc cccagttgcc atcttcagaa tgattccctg cagagcagcg
      181 ctgtcttttg cgcgatgtct gatccggaga aaaatcgtca ctctggacag tctagaagat
      241 accaaactgt gccgctgctt atccaccatg gacctcattg ccctgggcgt tggaagcact
      301 ctgggggccg gagtttatgt ccttgctggt gaggttgcca aagcggattc tggccccagc
      361 atcgtggtct ccttcctcat cgctgcgctg gcttccgtga tggcaggcct atgctatgct
      421 gaatttgggg cccgagttcc caagactggg tctgcctatt tgtacactta cgttactgtc
      481 ggagaactgt gggccttcat cactggctgg aatctcattt tatcttatgt gataggaacg
      541 tcaagtgttg caagggcttg gagtggcacc tttgatgaac ttcttagcaa acagattggt
      601 cagtttttca ggacatactt caaaatgaat tatactggcc ttgcagagta tcctgacttt
      661 tttgctgtgt gccttatatt acttctagca ggtcttttat cttttggagt aaaagagtct
      721 gcttgggtga ataaagtctt cacagccatt aatatcctgg tccttctgtt tgttatggtc
      781 gctgggtttg tgaaaggaaa tgtggcaaac tggaagatta gtgaagagtt tctcaaaaat
      841 atatctgcaa gtgccaggga gccaccttct gaaaatggaa caagtatcta tggggctggt
      901 ggctttatgc cttatggctt tgcaggaact ttggctgggg ctgcaacctg cttttatgcc
      961 tttgtgggat ttgactgcat tgcaacaact ggtgaggaag tccggaatcc tcagaaagct
     1021 attcctattg gaattgtgac ttctctgctc gtttgcttta tggcctattt tggggtctca
     1081 gcagctttaa cactgatgat gccatactac ctcctcgatg agaaaagccc ccttcctgta
     1141 gcatttgagt atgttggatg gggtccagcc aaatatgtcg ttgcagcagg ctccctctgt
     1201 gctttgtcaa caagtcttct tggatccatt ttcccaatgc ctcgtgtaat ctatgctatg
     1261 gcggaggatg ggttgctttt caaatgtcta gctcaaatca attccaaaac gaagacacca
     1321 ataattgcta ctttatcatc gggtgcggtg gcagctgtga tggcatttct ttttgacctg
     1381 aaggccctcg tggacatgat gtccatcggc acccttctgg cctactctct ggtcgcagcc
     1441 tgtgttctca tcctcaggta ccagcctggc ttatcttacg agcaacccaa atattgtcct
     1501 gagaaagaag ctctgggatc gtgtgccaac actgcctcca aaagcgcgtc ccaggtcact
     1561 gcgctgccag gacagggctt cagcctgcga accctcgtca gcccctcgct tctgcccaca
     1621 aaacagtcgg cttctctcgt gagctttctg gtaggattcc tcgcatttct cattttgggc
     1681 ctgagtattt tgaccacgcg tggagtccac acgattgcca ggctggaagc gtggagcctc
     1741 gctcttcttg tcctgttgct tgttctctgc attgccattg tgctcatcat ttggaggcag
     1801 cctcagaatc agcaaaaagt agcctttatg gttccgttct taccattttt gccagccttc
     1861 agcatcctgg tgaacattta cttgatggtc cagttgagtg cagacacctg gatcagattt
     1921 agcatttgga tggcgcttgg tttcctgatt tacttcgctt atggcattag acacagcctg
     1981 gagggtaatt cgagggatga cgatgatgat gaagatattt attcagacaa cattaatgca
     2041 gcgacagaag aaaaatctgc cattcaagca aatgaccatc accaaagaaa cctgagttta
     2101 cctttcatat tccatgaaaa gacaagtgaa tgctagtacc tgcacgagca gagctggtcc
     2161 acagtcttca cgtacatatc ctacacggag tgaaccatga cggatgtcat cgtcatgcta
     2221 ggttgtcatc ggtttgctgc agacacagtt caccctaatt tatacttact cgcctggaca
     2281 gcacctcctc agatggtgaa ttatacatcc agggaaaata ccctgagctc gctcctcagt
     2341 gatgaatgtc ccccaaatag tgggattgtg ggagtgtgtg tgtgtacgtt tgtatatgct
     2401 ggggaatatc gatgttaaaa gttgttggtg ttttactatt attgtattgc atttttccag
     2461 tgttgtcatt aatcggtagc atatactgca catactgaaa tggagataat cacggaatag
     2521 aaaaatattc tgtatgtgct gggtgtggtt ggggaaatag ctgttgcttt tccttattag
     2581 gctttattaa tgtcaagtta gaacatacta aaaatgcatt tacccatcac agtgtctgtc
     2641 attggtctgg agtaagagga ggggatagga aatgagcctt ttctacaact tataagtgcc
     2701 agcagtggct ttagtacaga tttttcttcc gtgaggtgtg acagtttgct aaaaccttcg
     2761 ccaataggag tgttcgtgtc tgccgggctg cgcagggcag gtgtggccct ctgtgtcatc
     2821 agatgtcagg cacccctttg aactgctgtc ttctttgaga acagtggtcc ttaaatgtga
     2881 ggccttcacc ttctgtgaat gatatattcc cccctgccct gtcccagtcc agtcagaggc
     2941 ttgggagagg tagtgtgatc tacttgggac cctttgtgct agagagtgag cgcggtcccc
     3001 atgggtagga agctcatgta agtggcaaag atgaggatat gtttgaagat cagagtagac
     3061 atgtgcttgg acaagtagac cccaagcacc cctgttttaa aagtcagtta aaataagcca
     3121 gtagaatctc ccagatcaca caactgatgg aatgattcat gcttttttcc attacttaat
     3181 aaacaatcac agttcaactt ttttttctaa ctcagtagca aattctcttt ctactatatg
     3241 caaaaaagaa ggaaaaaatg aagggataca aggaaagaaa attcccctgt tctgatttta
     3301 aagtgcctat tcagttatta aagggcattt gacccaattt taggggttca gatctaattt
     3361 gcctctgatg tttcttttgg aaacagggat gtttttcttc ccccatccca taaattgttt
     3421 agcacttttt atttcattta tttttaaatg accacactaa acctattgat acaagctcta
     3481 gtattctaca aaaacccatc agtggtcggg gaatagaata ttttggtaaa atacatggtc
     3541 gtttaaaacg tcaagctgaa aaattaacca aattgaatta aagccataga aacacaataa
     3601 cctttgtatg agtaaataat tcgtttttaa atgtaagatt ctctaattac tgtattttac
     3661 tttatagggt tctctaatag tggactactt atctgcagtg tgttttgctt ctcatgaatt
     3721 atttttctta caaataatta tatggttcac tagatgagac tgagtctaaa cacttacata
     3781 tgtatgggtt atatttccag gaagaacatt atcaagccca ggtgaccagc ttactccaaa
     3841 ggcaaggaaa acatttattt tctgacagct tttccaagag atgtcacttt atttttttca
     3901 ttaaaaagca agttatgatt gttaaggagt ttattgtgat taaatatcca ataaacaggt
     3961 agaaggcctg ggtttctggc tgctagtgtt gtagcatctc tgacatagaa ctcagtacta
     4021 acattccaca atttccaggg tgcacacggt aaaatctgaa gcccagaatt cttttaagct
     4081 gcatgtttta ctggagagga agagttggct atacaagggg taaagtattt ctgtaagcac
     4141 tgtgggccta atcataagtc cttgctgtta tttgccgtat actgagaagc cctttttttc
     4201 tgaaatcatt ctagaacagg cccttcacac agggaacatg aagaatttca tatgtgaata
     4261 ttaaaacttt tactgtaaca atatcaagaa atttgtttag aacatgacag gcagctaaaa
     4321 ctattatgcc cactgtgttc aattaggagc agaatttagt taaaaattat ttttctacct
     4381 tgaaacactt tacaaataca aatatctatg aaaagatgct ttgtcagtga ctatgctttt
     4441 tttctgtgaa aagtcaaatg tatgttcgta tgtatgtgtg agtgtgtaca tatacacgta
     4501 tatatatgtg tgtgtatatt tcaaacatca gtgtagaagt cagctgggtt taggatgggg
     4561 tttggaaata atactgttgt ctagatttta aaaacccaac tgatggagaa aaaataatgt
     4621 tttatattga taggtatgct tatgcaaaac ttttaggttt taaactattt tgaaatatat
     4681 agcgatttta tatgtgtaat attttctata gatagattct ttaaggaaaa tatatttata
     4741 atgtttctaa tatgagatca ctgaagtctg gtacattata ccaggagctt tatgatctga
     4801 aatggagttg ggggcggggg cattagggga tttctgttta ttgcttctgc tgcacctttt
     4861 ctgacattgc tgtcttggtt tgtgcttgtt aggaaaagcc agtactacca ggtcttttat
     4921 cacctctctg tccctacatt tgaatttata accttttgaa caaaattttg tttttacttt
     4981 cctaggattg ccaaaatgtt ctgtacaggt tttactagta atcagtcaca cttatataaa
     5041 gtccttttca gaaattaaaa aatacatata cattctctta attgtgactg agtaaaaaca
     5101 gcttgaatta cctttctttt ttgcactagg aaatatgctc tctgaacatt ctcaatggaa
     5161 aactttaata gtacctttat tttatactct taaaaaagaa agatgatttg tgaataacat
     5221 acaaaggcca tgcctaccct acatttaact aggtagctat gcaaatccaa gtttaaaaag
     5281 tatttatgag aaaatttaga acttttgatg tatactgaaa cagagtactg cttaatcaca
     5341 ttttccccag agatgaatat caagaaaaga ccaaaacatc atttgaggta ttatatacat
     5401 taatgaaaaa ctaatgatga tatctataaa actttactgt catcaaccac acttggtaga
     5461 aaatatgttt cagaactacc ttcctttaaa agacaagggc ctgtcttctt caaatttttc
     5521 tgaataaaag atttttaaac ttcttttatt ttaaatatta gccaaaatat cttctaagtc
     5581 ctgggtattt acaggtagac gttaaaatct tttgaattag aatttgtatt taacaaacta
     5641 ttttcgaaat atttttgaat gcagggagaa taaggaaaag taatcgccca ccaatgctgg
     5701 tagtgccaga gggagcaggt tagtcttagc tttttttcct cttagatcag cacattctga
     5761 gattataaac cacatgataa aattgtgcca agattccaac tctgacttac gtgtgatgtt
     5821 gcttctgatg ttctctgtct gggtttctcc tgatgtgctt caagcgacag tacaattcaa
     5881 actaaaaaca caatgtccac agaattttaa aggattgggt ttagagtgtg cgtcatggaa
     5941 tattaatatt cacatgatta gcgtgacttt cttggggggt tgtgattaac tgggtttttt
     6001 ggtttgtttt tggtttttga ctagtgccaa aatagtgcct tctctatatt ttctacctac
     6061 gttttctaac ttgtcctaaa atatcaaagg aaaaagtacc aaagttcatg taggaactaa
     6121 tgccatcaca ggtcattttt cagacatgta gatgtgaaaa tgaggttgct taactttgtt
     6181 gtttagctga gttttttttt ttatctcctt gtatatcata tttaaacatt ttctaatggc
     6241 tttctggttt ctgaattttg agaggcctga tctgttactg ttgtggttgt tggtttagtg
     6301 gttggttttc ataacattca ttgctgttca tatgtacaca gtttagtcat gttcatttca
     6361 aatgcatttt gttatggctc aacccaatgg caaccctgtt tgctgagagc actatcttcg
     6421 cttttattca tcacggctga agccactgcc ataatctctg gccttaaaga gccttcactg
     6481 accactgaca gcagctccac ggggttcata accaagaccc tgggtcaggc agactgcaaa
     6541 gtatgagcgt ctatagctac cccgttggtg ggggcttgtg atgacagggt aggatatgaa
     6601 gtgaaagact tcacatgaaa ctaaggtagt ttggggtcct taatttcagc cccaaatagc
     6661 ccatgagtac aaggtaaatg ataaggacca aggaacctcc atgactcatg gaaaggatgg
     6721 ctgcttcctg gaactgcacc actgcagttt ctgcaccagc actaagagcc ttgggcagga
     6781 aagtgcgtgg gcctcggctc agttggtaaa gaaccttgtg ttgccaacag gacaggtttc
     6841 tctggcccgt gcctggttaa caggctcttc atctttggtg cccaattgtt tcattgcttt
     6901 attttgttat cattgtactt aatagaagct gttgataggg cctaaaaccc tgcagaaatt
     6961 ctatgtctgt aaaaaccaac agatacattg gtcttatgcg aatatagagt ttttttgtgt
     7021 agtaggtaac tttaaattta aatgtcctta atgataatca gtgttcctta ttacttataa
     7081 agttggatta tttttagaat ttgtaatgaa taaaaaccgc tgctgcttta ccactgtaaa
     7141 atatgctttc taacatgacc atgtattttt aaaataaatt ataatacga
//
LOCUS       XM_032618562            7267 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 7 member 2
            (SLC7A2), transcript variant X3, mRNA.
ACCESSION   XM_032618562
VERSION     XM_032618562.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7267
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7267
                     /gene="SLC7A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746840"
     CDS             238..2214
                     /gene="SLC7A2"
                     /codon_start=1
                     /product="cationic amino acid transporter 2 isoform X2"
                     /protein_id="XP_032474453.1"
                     /db_xref="GeneID:116746840"
                     /translation="MIPCRAALSFARCLIRRKIVTLDSLEDTKLCRCLSTMDLIALGV
                     GSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPKTGSAYLY
                     TYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTFDELLSKQIGQFFRTYFKMNYTG
                     LAEYPDFFAVCLILLLAGLLSFGVKESAWVNKVFTAINILVLLFVMVAGFVKGNVANW
                     KISEEFLKNISASAREPPSENGTSIYGAGGFMPYGFAGTLAGAATCFYAFVGFDCIAT
                     TGEEVRNPQKAIPIGIVTSLLVCFMAYFGVSAALTLMMPYYLLDEKSPLPVAFEYVGW
                     GPAKYVVAAGSLCALSTSLLGSIFPMPRVIYAMAEDGLLFKCLAQINSKTKTPIIATL
                     SSGAVAAVMAFLFDLKALVDMMSIGTLLAYSLVAACVLILRYQPGLSYEQPKYCPEKE
                     ALGSCANTASKSASQVTALPGQGFSLRTLVSPSLLPTKQSASLVSFLVGFLAFLILGL
                     SILTTRGVHTIARLEAWSLALLVLLLVLCIAIVLIIWRQPQNQQKVAFMVPFLPFLPA
                     FSILVNIYLMVQLSADTWIRFSIWMALGFLIYFAYGIRHSLEGNSRDDDDDEDIYSDN
                     INAATEEKSAIQANDHHQRNLSLPFIFHEKTSEC"
     misc_feature    250..2061
                     /gene="SLC7A2"
                     /note="cationic amino acid transport permease; Region:
                     2A0303; TIGR00906"
                     /db_xref="CDD:273330"
ORIGIN      
        1 ttgcacggcg acgccgcggt tccctttggc cgccctgttc ccgaggggcc ctgtgcaccc
       61 tcgtgcggga ggaccggccg ggcctcccca ccccgcccta cgcactggcg ggtccccgaa
      121 gtcgcctgcc gctcgcttga ggctcttggg ttacatatag gacaccgctc ggagctctgg
      181 aagtcttttc acaccctgac ctgcccggga ctggtaggac aggttgccat cttcagaatg
      241 attccctgca gagcagcgct gtcttttgcg cgatgtctga tccggagaaa aatcgtcact
      301 ctggacagtc tagaagatac caaactgtgc cgctgcttat ccaccatgga cctcattgcc
      361 ctgggcgttg gaagcactct gggggccgga gtttatgtcc ttgctggtga ggttgccaaa
      421 gcggattctg gccccagcat cgtggtctcc ttcctcatcg ctgcgctggc ttccgtgatg
      481 gcaggcctat gctatgctga atttggggcc cgagttccca agactgggtc tgcctatttg
      541 tacacttacg ttactgtcgg agaactgtgg gccttcatca ctggctggaa tctcatttta
      601 tcttatgtga taggaacgtc aagtgttgca agggcttgga gtggcacctt tgatgaactt
      661 cttagcaaac agattggtca gtttttcagg acatacttca aaatgaatta tactggcctt
      721 gcagagtatc ctgacttttt tgctgtgtgc cttatattac ttctagcagg tcttttatct
      781 tttggagtaa aagagtctgc ttgggtgaat aaagtcttca cagccattaa tatcctggtc
      841 cttctgtttg ttatggtcgc tgggtttgtg aaaggaaatg tggcaaactg gaagattagt
      901 gaagagtttc tcaaaaatat atctgcaagt gccagggagc caccttctga aaatggaaca
      961 agtatctatg gggctggtgg ctttatgcct tatggctttg caggaacttt ggctggggct
     1021 gcaacctgct tttatgcctt tgtgggattt gactgcattg caacaactgg tgaggaagtc
     1081 cggaatcctc agaaagctat tcctattgga attgtgactt ctctgctcgt ttgctttatg
     1141 gcctattttg gggtctcagc agctttaaca ctgatgatgc catactacct cctcgatgag
     1201 aaaagccccc ttcctgtagc atttgagtat gttggatggg gtccagccaa atatgtcgtt
     1261 gcagcaggct ccctctgtgc tttgtcaaca agtcttcttg gatccatttt cccaatgcct
     1321 cgtgtaatct atgctatggc ggaggatggg ttgcttttca aatgtctagc tcaaatcaat
     1381 tccaaaacga agacaccaat aattgctact ttatcatcgg gtgcggtggc agctgtgatg
     1441 gcatttcttt ttgacctgaa ggccctcgtg gacatgatgt ccatcggcac ccttctggcc
     1501 tactctctgg tcgcagcctg tgttctcatc ctcaggtacc agcctggctt atcttacgag
     1561 caacccaaat attgtcctga gaaagaagct ctgggatcgt gtgccaacac tgcctccaaa
     1621 agcgcgtccc aggtcactgc gctgccagga cagggcttca gcctgcgaac cctcgtcagc
     1681 ccctcgcttc tgcccacaaa acagtcggct tctctcgtga gctttctggt aggattcctc
     1741 gcatttctca ttttgggcct gagtattttg accacgcgtg gagtccacac gattgccagg
     1801 ctggaagcgt ggagcctcgc tcttcttgtc ctgttgcttg ttctctgcat tgccattgtg
     1861 ctcatcattt ggaggcagcc tcagaatcag caaaaagtag cctttatggt tccgttctta
     1921 ccatttttgc cagccttcag catcctggtg aacatttact tgatggtcca gttgagtgca
     1981 gacacctgga tcagatttag catttggatg gcgcttggtt tcctgattta cttcgcttat
     2041 ggcattagac acagcctgga gggtaattcg agggatgacg atgatgatga agatatttat
     2101 tcagacaaca ttaatgcagc gacagaagaa aaatctgcca ttcaagcaaa tgaccatcac
     2161 caaagaaacc tgagtttacc tttcatattc catgaaaaga caagtgaatg ctagtacctg
     2221 cacgagcaga gctggtccac agtcttcacg tacatatcct acacggagtg aaccatgacg
     2281 gatgtcatcg tcatgctagg ttgtcatcgg tttgctgcag acacagttca ccctaattta
     2341 tacttactcg cctggacagc acctcctcag atggtgaatt atacatccag ggaaaatacc
     2401 ctgagctcgc tcctcagtga tgaatgtccc ccaaatagtg ggattgtggg agtgtgtgtg
     2461 tgtacgtttg tatatgctgg ggaatatcga tgttaaaagt tgttggtgtt ttactattat
     2521 tgtattgcat ttttccagtg ttgtcattaa tcggtagcat atactgcaca tactgaaatg
     2581 gagataatca cggaatagaa aaatattctg tatgtgctgg gtgtggttgg ggaaatagct
     2641 gttgcttttc cttattaggc tttattaatg tcaagttaga acatactaaa aatgcattta
     2701 cccatcacag tgtctgtcat tggtctggag taagaggagg ggataggaaa tgagcctttt
     2761 ctacaactta taagtgccag cagtggcttt agtacagatt tttcttccgt gaggtgtgac
     2821 agtttgctaa aaccttcgcc aataggagtg ttcgtgtctg ccgggctgcg cagggcaggt
     2881 gtggccctct gtgtcatcag atgtcaggca cccctttgaa ctgctgtctt ctttgagaac
     2941 agtggtcctt aaatgtgagg ccttcacctt ctgtgaatga tatattcccc cctgccctgt
     3001 cccagtccag tcagaggctt gggagaggta gtgtgatcta cttgggaccc tttgtgctag
     3061 agagtgagcg cggtccccat gggtaggaag ctcatgtaag tggcaaagat gaggatatgt
     3121 ttgaagatca gagtagacat gtgcttggac aagtagaccc caagcacccc tgttttaaaa
     3181 gtcagttaaa ataagccagt agaatctccc agatcacaca actgatggaa tgattcatgc
     3241 ttttttccat tacttaataa acaatcacag ttcaactttt ttttctaact cagtagcaaa
     3301 ttctctttct actatatgca aaaaagaagg aaaaaatgaa gggatacaag gaaagaaaat
     3361 tcccctgttc tgattttaaa gtgcctattc agttattaaa gggcatttga cccaatttta
     3421 ggggttcaga tctaatttgc ctctgatgtt tcttttggaa acagggatgt ttttcttccc
     3481 ccatcccata aattgtttag cactttttat ttcatttatt tttaaatgac cacactaaac
     3541 ctattgatac aagctctagt attctacaaa aacccatcag tggtcgggga atagaatatt
     3601 ttggtaaaat acatggtcgt ttaaaacgtc aagctgaaaa attaaccaaa ttgaattaaa
     3661 gccatagaaa cacaataacc tttgtatgag taaataattc gtttttaaat gtaagattct
     3721 ctaattactg tattttactt tatagggttc tctaatagtg gactacttat ctgcagtgtg
     3781 ttttgcttct catgaattat ttttcttaca aataattata tggttcacta gatgagactg
     3841 agtctaaaca cttacatatg tatgggttat atttccagga agaacattat caagcccagg
     3901 tgaccagctt actccaaagg caaggaaaac atttattttc tgacagcttt tccaagagat
     3961 gtcactttat ttttttcatt aaaaagcaag ttatgattgt taaggagttt attgtgatta
     4021 aatatccaat aaacaggtag aaggcctggg tttctggctg ctagtgttgt agcatctctg
     4081 acatagaact cagtactaac attccacaat ttccagggtg cacacggtaa aatctgaagc
     4141 ccagaattct tttaagctgc atgttttact ggagaggaag agttggctat acaaggggta
     4201 aagtatttct gtaagcactg tgggcctaat cataagtcct tgctgttatt tgccgtatac
     4261 tgagaagccc tttttttctg aaatcattct agaacaggcc cttcacacag ggaacatgaa
     4321 gaatttcata tgtgaatatt aaaactttta ctgtaacaat atcaagaaat ttgtttagaa
     4381 catgacaggc agctaaaact attatgccca ctgtgttcaa ttaggagcag aatttagtta
     4441 aaaattattt ttctaccttg aaacacttta caaatacaaa tatctatgaa aagatgcttt
     4501 gtcagtgact atgctttttt tctgtgaaaa gtcaaatgta tgttcgtatg tatgtgtgag
     4561 tgtgtacata tacacgtata tatatgtgtg tgtatatttc aaacatcagt gtagaagtca
     4621 gctgggttta ggatggggtt tggaaataat actgttgtct agattttaaa aacccaactg
     4681 atggagaaaa aataatgttt tatattgata ggtatgctta tgcaaaactt ttaggtttta
     4741 aactattttg aaatatatag cgattttata tgtgtaatat tttctataga tagattcttt
     4801 aaggaaaata tatttataat gtttctaata tgagatcact gaagtctggt acattatacc
     4861 aggagcttta tgatctgaaa tggagttggg ggcgggggca ttaggggatt tctgtttatt
     4921 gcttctgctg caccttttct gacattgctg tcttggtttg tgcttgttag gaaaagccag
     4981 tactaccagg tcttttatca cctctctgtc cctacatttg aatttataac cttttgaaca
     5041 aaattttgtt tttactttcc taggattgcc aaaatgttct gtacaggttt tactagtaat
     5101 cagtcacact tatataaagt ccttttcaga aattaaaaaa tacatataca ttctcttaat
     5161 tgtgactgag taaaaacagc ttgaattacc tttctttttt gcactaggaa atatgctctc
     5221 tgaacattct caatggaaaa ctttaatagt acctttattt tatactctta aaaaagaaag
     5281 atgatttgtg aataacatac aaaggccatg cctaccctac atttaactag gtagctatgc
     5341 aaatccaagt ttaaaaagta tttatgagaa aatttagaac ttttgatgta tactgaaaca
     5401 gagtactgct taatcacatt ttccccagag atgaatatca agaaaagacc aaaacatcat
     5461 ttgaggtatt atatacatta atgaaaaact aatgatgata tctataaaac tttactgtca
     5521 tcaaccacac ttggtagaaa atatgtttca gaactacctt cctttaaaag acaagggcct
     5581 gtcttcttca aatttttctg aataaaagat ttttaaactt cttttatttt aaatattagc
     5641 caaaatatct tctaagtcct gggtatttac aggtagacgt taaaatcttt tgaattagaa
     5701 tttgtattta acaaactatt ttcgaaatat ttttgaatgc agggagaata aggaaaagta
     5761 atcgcccacc aatgctggta gtgccagagg gagcaggtta gtcttagctt tttttcctct
     5821 tagatcagca cattctgaga ttataaacca catgataaaa ttgtgccaag attccaactc
     5881 tgacttacgt gtgatgttgc ttctgatgtt ctctgtctgg gtttctcctg atgtgcttca
     5941 agcgacagta caattcaaac taaaaacaca atgtccacag aattttaaag gattgggttt
     6001 agagtgtgcg tcatggaata ttaatattca catgattagc gtgactttct tggggggttg
     6061 tgattaactg ggttttttgg tttgtttttg gtttttgact agtgccaaaa tagtgccttc
     6121 tctatatttt ctacctacgt tttctaactt gtcctaaaat atcaaaggaa aaagtaccaa
     6181 agttcatgta ggaactaatg ccatcacagg tcatttttca gacatgtaga tgtgaaaatg
     6241 aggttgctta actttgttgt ttagctgagt tttttttttt atctccttgt atatcatatt
     6301 taaacatttt ctaatggctt tctggtttct gaattttgag aggcctgatc tgttactgtt
     6361 gtggttgttg gtttagtggt tggttttcat aacattcatt gctgttcata tgtacacagt
     6421 ttagtcatgt tcatttcaaa tgcattttgt tatggctcaa cccaatggca accctgtttg
     6481 ctgagagcac tatcttcgct tttattcatc acggctgaag ccactgccat aatctctggc
     6541 cttaaagagc cttcactgac cactgacagc agctccacgg ggttcataac caagaccctg
     6601 ggtcaggcag actgcaaagt atgagcgtct atagctaccc cgttggtggg ggcttgtgat
     6661 gacagggtag gatatgaagt gaaagacttc acatgaaact aaggtagttt ggggtcctta
     6721 atttcagccc caaatagccc atgagtacaa ggtaaatgat aaggaccaag gaacctccat
     6781 gactcatgga aaggatggct gcttcctgga actgcaccac tgcagtttct gcaccagcac
     6841 taagagcctt gggcaggaaa gtgcgtgggc ctcggctcag ttggtaaaga accttgtgtt
     6901 gccaacagga caggtttctc tggcccgtgc ctggttaaca ggctcttcat ctttggtgcc
     6961 caattgtttc attgctttat tttgttatca ttgtacttaa tagaagctgt tgatagggcc
     7021 taaaaccctg cagaaattct atgtctgtaa aaaccaacag atacattggt cttatgcgaa
     7081 tatagagttt ttttgtgtag taggtaactt taaatttaaa tgtccttaat gataatcagt
     7141 gttccttatt acttataaag ttggattatt tttagaattt gtaatgaata aaaaccgctg
     7201 ctgctttacc actgtaaaat atgctttcta acatgaccat gtatttttaa aataaattat
     7261 aatacga
//
LOCUS       XM_032618564            1382 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 25 member 4
            (SLC25A4), mRNA.
ACCESSION   XM_032618564
VERSION     XM_032618564.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1382
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1382
                     /gene="SLC25A4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 mRNAs, 6 long SRA reads, 36
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746841"
     CDS             136..1032
                     /gene="SLC25A4"
                     /codon_start=1
                     /product="ADP/ATP translocase 1"
                     /protein_id="XP_032474455.1"
                     /db_xref="GeneID:116746841"
                     /translation="MSDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASQQ
                     ISAEKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG
                     VDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNC
                     LTKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQ
                     TVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYSGTVDCWRKIAKDEGPKAFFKGAWS
                     NVLRGMGGAFVLVLYDEIKKYV"
     misc_feature    139..1029
                     /gene="SLC25A4"
                     /note="ADP/ATP transporter on adenylate translocase;
                     Provisional; Region: PTZ00169"
                     /db_xref="CDD:240302"
ORIGIN      
        1 ataaggccgg ctgcggggcg ggggaacgac cggccccttc gcgtcgcgca gggacagagc
       61 cggggactct gtgcctggcc aggcgaagag agtgagagcg cggctctcgg aggcggtgtg
      121 cgcccggctg tcaccatgag cgaccaggct ttgagcttct tgaaggactt cttggctggc
      181 ggcgtcgccg ctgccatctc caagaccgcg gttgccccca tcgagagagt caaactgctg
      241 ctgcaggtcc agcatgccag ccaacagatc agtgctgaga agcaatacaa agggatcatt
      301 gattgcgtgg tgagaatccc caaggagcag ggcgttctct ccttctggag gggtaacctg
      361 gccaacgtga tccgttactt ccccacccaa gctctcaact tcgccttcaa ggacaagtac
      421 aagcagatct tcctgggggg cgtggaccgg cataagcagt tctggcgcta ctttgccggt
      481 aacctggctt ccggtggggc agctggggcc acctctctct gctttgtcta cccgctggac
      541 tttgctagga ccagattggc cgccgacgtg ggcaagggtg ctgcccagcg tgagttcact
      601 ggtctgggca actgtctcac caagatcttc aagtctgatg gcctgagggg tctctaccag
      661 ggtttcaacg tctctgtcca gggcatcatt atctatagag ccgcctactt tggagtctat
      721 gacacggcca aggggatgtt gcctgacccc aagaatgtgc acattatcgt gagctggatg
      781 atcgcccaga ctgtgacggc ggtcgcgggg ttggtgtcct acccctttga cactgtccgt
      841 cgtaggatga tgatgcagtc tggtcggaaa ggggcggata ttatgtactc tgggacagtg
      901 gactgctgga ggaagattgc aaaagatgaa ggacccaagg ctttcttcaa aggcgcctgg
      961 tccaacgtgt tgagaggcat gggcggtgct tttgtattgg tattgtatga tgagatcaaa
     1021 aaatatgtct gatgtaatta aaactcaagt tcattggttc cagatccatt gtgtggttta
     1081 atagactctt cctaggggaa gtaaaaagaa agatctggga tgaaaccaga ttgaaaggaa
     1141 tacgtcagga aaaaaaaaaa aaaggcttca ttgagtattc attaaaccac aaatgtattt
     1201 tgtatttatt ttacacttaa attcccacag caaacagaaa agaacttatc atacttatat
     1261 aattaactga agacacaata atgaataact gaaggtgaaa tgtcagtaaa gaccacttaa
     1321 tgcacgatat tttactgaat tcttcttaac tgccaaatgg attaaaatca taagaccatc
     1381 ca
//
LOCUS       XM_032618565            2156 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pyridoxal phosphate binding protein
            (PLPBP), mRNA.
ACCESSION   XM_032618565
VERSION     XM_032618565.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2156
                     /gene="PLPBP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746842"
     CDS             72..902
                     /gene="PLPBP"
                     /codon_start=1
                     /product="pyridoxal phosphate homeostasis protein"
                     /protein_id="XP_032474456.1"
                     /db_xref="GeneID:116746842"
                     /translation="MWRAGSMSAELGVGFALRAVNERVQQAVTRRPRELPAIQPRLVA
                     VSKTKPADMVIEAYSHGQRTFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNV
                     NKLMAVPNLFMLETVDSVKLADKVNSAWQKKGSPERLKVMVQINTSGEESKHGLPPAE
                     MVAVVEHISAKCPSLEFVGLMTIGSLGHDLSRGPNPDFQVLLSLREELCRKLSIPADQ
                     VELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYSKKAAPDKAAAELKAPAAEVARAH
                     "
     misc_feature    120..815
                     /gene="PLPBP"
                     /note="Pyridoxal 5-phosphate (PLP)-binding TIM barrel
                     domain of Type III PLP-Dependent Enzymes, Eukaryotic
                     YBL036c-like proteins; Region: PLPDE_III_YBL036c_euk;
                     cd06822"
                     /db_xref="CDD:143496"
     misc_feature    order(204..206,210..212,273..275,351..353,612..614,
                     618..620,744..749,792..803)
                     /gene="PLPBP"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143496"
     misc_feature    210..212
                     /gene="PLPBP"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:143496"
ORIGIN      
        1 gagctgggcg ggaccggaag gggtctcagc ctggggagcg ggggtccggg ctggacgtta
       61 ggccctgggg gatgtggaga gctggcagca tgtccgcgga gctgggggtc ggcttcgccc
      121 tgagggcggt gaacgagcgc gtgcagcagg cggtgacgcg gcggccgcgg gaactcccag
      181 ccatccagcc ccggctagta gcggtcagca aaaccaaacc tgcagacatg gtgatcgagg
      241 cctacagtca cgggcagcgc actttcgggg agaactatgt tcaggaactg cttgaaaaag
      301 catcaaatcc taaaattctg tcttcgtgtc ctgagatcaa atggcacttc attggccatc
      361 tacagaaaca aaatgtcaat aagttgatgg ctgtccccaa tctcttcatg ctggaaacag
      421 tggattctgt gaagctggca gacaaagtga acagtgcgtg gcagaaaaaa ggttctcccg
      481 aaaggttaaa ggttatggtc cagattaaca ccagtggaga ggagagcaaa cacggcctgc
      541 cccctgcaga gatggtggcc gtggtggaac acataagcgc caagtgcccc agcctggagt
      601 tcgtggggct gatgaccatc gggagcttag ggcacgatct tagtcgagga ccaaacccag
      661 acttccaggt gttactgtcc ctccgggagg agctgtgcag gaagctgagc attcctgctg
      721 accaggtgga gctgagcatg ggcatgtcca tggacttcca gcatgcgatt gaagtgggat
      781 ctacgaatgt ccgaatagga agcaccattt ttggagagcg agattactcc aagaaagctg
      841 ccccagacaa ggctgcagca gagctgaagg ccccggcggc ggaggtggcc cgggcacatt
      901 gagcagcggc ccagcccaag ggccgggtcc aggaagactg actacgcact accctgggct
      961 ttcgcttcca cgtgccccac atcacagcac gaccacaccc tcctcgggac ctggaaagag
     1021 cacgccgacc attatgtgcg tcgatggaaa ccatctgact tagtgtctga cgcaggaagc
     1081 tcacttcaag cagtgacttt ggattggatt tgaggaatcc agacttttct gcagaacagg
     1141 tacctgggca ctagtcagga gttgagttca ggctcgaaca ttgcccaggg gcaccaacca
     1201 acccatgaat gcctttccca ggttaaaact tgctgactgt cgatgcctat aatcaccaaa
     1261 gtcagaggga ttctcacttg tcgtccactt caatagaaag ttccctgtta ccaacttcgt
     1321 acaaacccca ctgagtagcc atctctgctg ctctggagca gtgtggtttc tgcccccagt
     1381 ctccacccca gccagtaatc gttggtctcc actctggaat ggcagtacag gtaacttcag
     1441 gacctgcctt gagttagtcc tccagaccca cattgtggct gacgagagct gtgtcctcag
     1501 ccaccgtgtg gggctgaccc tgaaaattac agggcaacta acataagcag tccttgggcc
     1561 tttctaacat cctcctccag agacaggatt ttgagctttt gccctggggc ctatggtgat
     1621 gaccaccaaa tgatacgatt tttccgccac cacagtcccc gttacgatga tttcttatct
     1681 catagctccc cagatatgaa agattccctc aaagccagtt caggctcaca gtttcaacaa
     1741 agcctggctt tgaggttcct gttcctggga gcacttttta ggcatattta tagcctcccc
     1801 tcccaaccat gtttataagg cagaattttg caagtcttaa cgttaatgga gtagctagct
     1861 cttcaaaacc cagaaagcac aattctcgga tagtcacaac agacaactgt agtctgggtc
     1921 gttgtttgtt ttctaggtgg gtttttcttg cttattcaag ccccagtctt taattttatg
     1981 aaacaacttc cattaagctc ctgccgaaat gaaattttgt aaaacttaaa ccattatgat
     2041 tcctgtactg tttcagtcaa agctatagtg tgatatttca gtctattaaa taaaaatgtg
     2101 agtttgaatt atgccatcta tgccaattac aaagcgatta aaagatttat tttcta
//
LOCUS       XR_004347891             919 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746843
            (LOC116746843), ncRNA.
ACCESSION   XR_004347891
VERSION     XR_004347891.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..919
                     /gene="LOC116746843"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746843"
     ncRNA           1..919
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746843"
                     /product="uncharacterized LOC116746843"
                     /db_xref="GeneID:116746843"
ORIGIN      
        1 gcgcctccct cccaagtcgg gccaatccac cctgtcctgc gccagcgagg ggggtgggtg
       61 gactgacatt tactgagcat ctactagctg agacgctgcc acacacgtga tctccggcag
      121 acctggccgc ctttggctgc tctggtagtg gacgtcttct cctgcagcct ccgggcacag
      181 gcctggcccc tctcccaccc gccaaggctg ctgaccccta acacgaagcg ggatggagaa
      241 tgatcgcgct gcctggagac tggtcatttt cccgggatac cgacaccttc cgctccgacc
      301 aagccaacct ccagaaaacc tgacggccta acgtccagcc cggacccccg ctccccaggc
      361 tgagacccct tccggtcccg cccagctcac gtctccgtgt gcccaatcac cgctcaccac
      421 cgagtcgtct cagccaatcg tcagcacggg gcgggacggg gacggagcgg ccggtggccc
      481 cggccccggc ccctcgacgg cgccatcttg ggaaggtcgc cgcggaagcc tggcgtggct
      541 cctgggtgcg gaggcgctgc tagcgtagtt cccgggccgt ggggcgggcc ttctgcgtcc
      601 ggtgtctctg ccgcccccgc ggaaccgaaa ggacgcagaa aacttggcct atgctcgagg
      661 tcctcttccc ggggtccttt gctcgcggat cagcaggaga agctgctggg gcgggagaca
      721 tgccttttat ctcagatgat tctcgggagg aaccgttaag agatataaaa gaaaactgca
      781 aagaacatgg caggattcca atgtacggtt attttcctct ggtcatcctt tagcccagta
      841 ctgcccagtg taagacacat atgtaattta aagttttcta ataggcacat taaaaaaata
      901 cattttatat agcccaata
//
LOCUS       XR_004347892            3925 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus GINS complex subunit 4 (GINS4),
            transcript variant X1, misc_RNA.
ACCESSION   XR_004347892
VERSION     XR_004347892.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3925
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3925
                     /gene="GINS4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746844"
     misc_RNA        1..3925
                     /gene="GINS4"
                     /product="GINS complex subunit 4, transcript variant X1"
                     /db_xref="GeneID:116746844"
ORIGIN      
        1 gtgtccaaga ggagcgcggg agctgagaag tgggtcagct gcgtcccgga aaggcctcgc
       61 gcggaccgtt ctgcggccgg tgctcctcag gctgcttccc gcgagggtcc ggccctcgcc
      121 acccgccagc ccggggtgcc ttcgcagcct gcccaggccc gggttcctgg tttcagagaa
      181 gatgacagag gagctggatc tcccgggaca ggactctgat gcggggagtg aggaggtggt
      241 cctgacccct gcagagctca ttgacaggct ggaacaggcc tggatgaatg aaaagtttgc
      301 ccctgagctg ctggaaaaca agtcggaaat cgttgaatgt gtcatggagc agctgcagca
      361 catggaagaa aatctcagga gggccaagaa gggggacctg aaggtcagca tccatcagat
      421 ggagatggag aggatccgct tcgtcctgag cagctacctg cggtgtcggc tcatgaagat
      481 agagaagttt ttccctcacg tcctcgaaaa ggagaaaaca cgccgtgagg gggagccttc
      541 cagcctttct ccggaagagt ttgcctttgc cagagagtac atggctaaca cagagaccta
      601 cctaaagaac gttgccttaa agcacatgcc tcctaattta cagaaggtgg acctcttgag
      661 ggcagaggaa attctcgtag ctgcccctgt aagtgcagac tcacccgcgt acgcagtcac
      721 ctcccgaggg tccatgctgt gctcggctct tctgggcgag gaagatgccg gggtctgtgg
      781 tctccggggg cagcagcgtc cccctcacag gttccaggcc atgcagggcc tgtctcctcg
      841 gggctggggg gaacgttagc tgggaggctg ggacgcctac aggggtccct cagggctcct
      901 gatcttcggt tgtgaacagc ctcccggctg tgggaagggg agcaggacag acggcaggga
      961 ggcgccaggg agggaagcac ggccatctcc tctacctctc acccccttgc tcggtcccct
     1021 gaaagtctgc cgagccaagg aggggccctg gtggtaacca ctaaccttgg atcagccagc
     1081 agggcccctg gcgtgtggcc tccagtcctc ctccccggcc tttcccagct cgccgtgtcc
     1141 acgcaggacc tcatgggggc ctggggtcca caggttccca agctgagttc acgacagcca
     1201 agccctgagc gtccctcgcc gacccagcct gggggccgcg ccctgagccc tgccgctggt
     1261 gggggactta gccccggctg ccacagctaa gtaccaccga caggacgggg gcgcctgacc
     1321 agtcggcgtg gatcttctca cagatgtgga ggccagagtc catggtcagg gtgctgacag
     1381 tgttggtttc cctgagtctc tctccttggc ttgcaggcgg ccgcccctgc acacgcaccc
     1441 tgctgtctgt ccctctcctc atcaggttgc atcagaaccc caccctgacg gctttatttt
     1501 gcctctttag aggcctggtc tccaaatcca ttcccgtcct gacgtactgg ggttcggggc
     1561 ttcagcgtgt catcgtggag gggacaccag gagcaagccc accgcgtgct gggcttgtgg
     1621 aactctgaac tggtcgtttt ggtgaacctg cctgagggac acaggaggcc cagtccgtgt
     1681 ccagttcggc cgctttcgtc tgcacttacg agtggggcaa ggaccacgtc cctaatcact
     1741 gcccagcacc acctgtcgta tccagttgag ccgggtccag gccgttgccc cagagctgct
     1801 tctacttgat gctggccaac acctcctgac gctcatgtgt cgcttgtcct gggtcccttc
     1861 caaggaccag agctgggtgc ctagggctgg agctgttcgg gaaccagcct tccctcgtga
     1921 gatgagagcc ttgctcacgt agcccagatg ccccctggag cacggagacc acagtggcag
     1981 agtcgtggaa gggcattgta gccaaacatc cttcgagggt ttcctcaaat cagcagctgc
     2041 ccagtgggcc cagctgaccc tgctgaagtt ggtgtctcta gcaggcccag aacccccgag
     2101 cagcccaggg gaccctcccc ggacctttgc gatcagttat cctgaccccc ttcccgtaga
     2161 cagggaaccg agggcagccc cacacctgag ctgggctctg aacactgagt tgtccggtgg
     2221 gttctccgga ccccgcaggt gatggggtcc tcttggcaca aacggagccg caggcaggga
     2281 agggctggag agctgccagc gcggggcact tcgtggtgaa gtgctggctg gtggtagaga
     2341 gggagggatg cttacagcgc gcagcccgta ttcatctccc tgacactcaa ggccatcacc
     2401 gtgtgaccca gtctgcctaa catccagtcc tcccaccctt tatacagaca ctttctggcc
     2461 cgattcacac actctgtcct cctaagacgt cacgcatgtt tctcccatgg ccctcgctct
     2521 ccctcccagg tgacctgcag atcttacatc ctcatcactt gtcaaatgag cgcgtgccgt
     2581 gtgaaacctt gagggaagta tgctgtttct agaaggagcc agatctctcc tctcatccct
     2641 gcccccaaga tgcttttaca tcaggggtcc ctttgtgcct gaggcagtta atcctagcag
     2701 cttctccatc ccgatcttgt tagctgagca ttttctgatc acactatcgt cctcctggca
     2761 gttcccaaac cagatctgga ttcatatgtg tttctgaggg tgaaagagcg acaggaaaac
     2821 atactggtag aaccggaaac agatgagcag agggactacg tgatcgacct ggaggagggc
     2881 tcacagcact tgatccgata caaaaccatc gcacccctgg tcgcttctgg agccgtacag
     2941 ctgatttaaa accggaagca actaaccaag agtgaggacg tggaacgttt ttggagagcg
     3001 tatttggaaa ccccccgtgt cagctggtgc ccgaggacgg gaacttttcc cggcagtgcc
     3061 gtgggtcact ggggcattga gatctgctcg gggcagaccc tccctggctg ctccagccag
     3121 gatcagcagg tggggtgatc gctctgccga ccccgcggct gggcagggac acggaagcgc
     3181 ccttcgtggt ggtgtttgaa ctgaggaaag tgaggccgag ggggtgcata gaaaggccgc
     3241 gctgcctgtg atgaggggac tggtgggccc caacctgaca gcggcagcag cactccctca
     3301 accctcctgg taggaagagt gtaaatagat taaaccgtgg ggccgccctg tatagtatgt
     3361 cactgactcg tgtaaactca gcttctggag cctctgctct cgcacttaaa gccaacttct
     3421 gtcgtgccta actgagcatc acaaccgata aactagtaac taggtctcgg cttcatggca
     3481 gaaggagccc gtgggcagtt cccagcgtgt agtctagtga ggtgcatcct ccccgccgcg
     3541 aactgcagcg tcgggcggtc catgtgccgg ccttgaccag ggccccgggg gcggagcagc
     3601 agcagctctc ctacgccgcc acctcagcgg cagctgttcc tttttaggct cttcacgttc
     3661 tcaaggggaa tagatgaaat taacctcggc gagtggacag tgtctcggtg acacccgagg
     3721 agggatgtgc acacgtgaat cgtcttccct tggaacgtga tacagagcaa ctgccttcca
     3781 gtcttgctca acgcaaaggc aggttttcat ctgcgtgatg ttgggtcttg gagtaatcag
     3841 tgtgatattg ctgtcatttc caagagaaat cactaagtga aagcaaggaa ggttttattc
     3901 gttaataaaa acgttttata tctca
//
LOCUS       XM_032618566            1849 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus GINS complex subunit 4 (GINS4),
            transcript variant X2, mRNA.
ACCESSION   XM_032618566
VERSION     XM_032618566.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1849
                     /gene="GINS4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746844"
     CDS             202..873
                     /gene="GINS4"
                     /codon_start=1
                     /product="DNA replication complex GINS protein SLD5"
                     /protein_id="XP_032474457.1"
                     /db_xref="GeneID:116746844"
                     /translation="MTEELDLPGQDSDAGSEEVVLTPAELIDRLEQAWMNEKFAPELL
                     ENKSEIVECVMEQLQHMEENLRRAKKGDLKVSIHQMEMERIRFVLSSYLRCRLMKIEK
                     FFPHVLEKEKTRREGEPSSLSPEEFAFAREYMANTETYLKNVALKHMPPNLQKVDLLR
                     AVPKPDLDSYVFLRVKERQENILVEPETDEQRDYVIDLEEGSQHLIRYKTIAPLVASG
                     AVQLI"
     misc_feature    277..639
                     /gene="GINS4"
                     /note="Alpha-helical domain of GINS complex protein Sld5;
                     Region: GINS_A_Sld5; cd11711"
                     /db_xref="CDD:212549"
     misc_feature    order(355..357,364..366,478..480,490..492,502..507,
                     565..567,574..576,580..582,586..618)
                     /gene="GINS4"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212549"
     misc_feature    694..870
                     /gene="GINS4"
                     /note="beta-strand (B) domain of GINS complex protein
                     Sld5; Region: GINS_B_Sld5; cd21692"
                     /db_xref="CDD:412028"
     misc_feature    order(697..699,703..711,715..717,769..771,796..798,
                     805..822)
                     /gene="GINS4"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412028"
ORIGIN      
        1 acgttgaatc cggacgggaa gtgtccaaga ggagcgcggg agctgagaag tgggtcagct
       61 gcgtcccgga aaggcctcgc gcggaccgtt ctgcggccgg tgctcctcag gctgcttccc
      121 gcgagggtcc ggccctcgcc acccgccagc ccggggtgcc ttcgcagcct gcccaggccc
      181 gggttcctgg tttcagagaa gatgacagag gagctggatc tcccgggaca ggactctgat
      241 gcggggagtg aggaggtggt cctgacccct gcagagctca ttgacaggct ggaacaggcc
      301 tggatgaatg aaaagtttgc ccctgagctg ctggaaaaca agtcggaaat cgttgaatgt
      361 gtcatggagc agctgcagca catggaagaa aatctcagga gggccaagaa gggggacctg
      421 aaggtcagca tccatcagat ggagatggag aggatccgct tcgtcctgag cagctacctg
      481 cggtgtcggc tcatgaagat agagaagttt ttccctcacg tcctcgaaaa ggagaaaaca
      541 cgccgtgagg gggagccttc cagcctttct ccggaagagt ttgcctttgc cagagagtac
      601 atggctaaca cagagaccta cctaaagaac gttgccttaa agcacatgcc tcctaattta
      661 cagaaggtgg acctcttgag ggcagttccc aaaccagatc tggattcata tgtgtttctg
      721 agggtgaaag agcgacagga aaacatactg gtagaaccgg aaacagatga gcagagggac
      781 tacgtgatcg acctggagga gggctcacag cacttgatcc gatacaaaac catcgcaccc
      841 ctggtcgctt ctggagccgt acagctgatt taaaaccgga agcaactaac caagagtgag
      901 gacgtggaac gtttttggag agcgtatttg gaaacccccc gtgtcagctg gtgcccgagg
      961 acgggaactt ttcccggcag tgccgtgggt cactggggca ttgagatctg ctcggggcag
     1021 accctccctg gctgctccag ccaggatcag caggtggggt gatcgctctg ccgaccccgc
     1081 ggctgggcag ggacacggaa gcgcccttcg tggtggtgtt tgaactgagg aaagtgaggc
     1141 cgagggggtg catagaaagg ccgcgctgcc tgtgatgagg ggactggtgg gccccaacct
     1201 gacagcggca gcagcactcc ctcaaccctc ctggtaggaa gagtgtaaat agattaaacc
     1261 gtggggccgc cctgtatagt atgtcactga ctcgtgtaaa ctcagcttct ggagcctctg
     1321 ctctcgcact taaagccaac ttctgtcgtg cctaactgag catcacaacc gataaactag
     1381 taactaggtc tcggcttcat ggcagaagga gcccgtgggc agttcccagc gtgtagtcta
     1441 gtgaggtgca tcctccccgc cgcgaactgc agcgtcgggc ggtccatgtg ccggccttga
     1501 ccagggcccc gggggcggag cagcagcagc tctcctacgc cgccacctca gcggcagctg
     1561 ttccttttta ggctcttcac gttctcaagg ggaatagatg aaattaacct cggcgagtgg
     1621 acagtgtctc ggtgacaccc gaggagggat gtgcacacgt gaatcgtctt cccttggaac
     1681 gtgatacaga gcaactgcct tccagtcttg ctcaacgcaa aggcaggttt tcatctgcgt
     1741 gatgttgggt cttggagtaa tcagtgtgat attgctgtca tttccaagag aaatcactaa
     1801 gtgaaagcaa ggaaggtttt attcgttaat aaaaacgttt tatatctca
//
LOCUS       XR_004347893            4065 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus GINS complex subunit 4 (GINS4),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004347893
VERSION     XR_004347893.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4065
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4065
                     /gene="GINS4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746844"
     misc_RNA        1..4065
                     /gene="GINS4"
                     /product="GINS complex subunit 4, transcript variant X3"
                     /db_xref="GeneID:116746844"
ORIGIN      
        1 ggttcctggt ttcagagaag atgacagagg agctggatct cccgggacag gactctgatg
       61 cggggagtga ggaggtggtc ctgacccctg cagagctcat tgacaggctg gaacaggtta
      121 aagaaggcac acgtgtcttg tggtcgaatt attctactcc tgggtgcata cctagagtgc
      181 ggcatataca cataacgagg gagaaagaca gcagtaaaat gagtaaaagc tcctgccaca
      241 gcatggacag atgtcaggaa catcacatag aagaacaaaa gataagttgc ggaagaaacc
      301 gtctgtgtac cgttcagagc ctggcgaagc tgtcgtccgg ggctgagctt gccagcttgg
      361 tggcgctgca cacgctgagg ctctgcagag gctcagatgc tgaccctcgc cctccaggcc
      421 tggatgaatg aaaagtttgc ccctgagctg ctggaaaaca agtcggaaat cgttgaatgt
      481 gtcatggagc agctgcagca catggaagaa aatctcagga gggccaagaa gggggacctg
      541 aaggtcagca tccatcagat ggagatggag aggatccgct tcgtcctgag cagctacctg
      601 cggtgtcggc tcatgaagat agagaagttt ttccctcacg tcctcgaaaa ggagaaaaca
      661 cgccgtgagg gggagccttc cagcctttct ccggaagagt ttgcctttgc cagagagtac
      721 atggctaaca cagagaccta cctaaagaac gttgccttaa agcacatgcc tcctaattta
      781 cagaaggtgg acctcttgag ggcagaggaa attctcgtag ctgcccctgt aagtgcagac
      841 tcacccgcgt acgcagtcac ctcccgaggg tccatgctgt gctcggctct tctgggcgag
      901 gaagatgccg gggtctgtgg tctccggggg cagcagcgtc cccctcacag gttccaggcc
      961 atgcagggcc tgtctcctcg gggctggggg gaacgttagc tgggaggctg ggacgcctac
     1021 aggggtccct cagggctcct gatcttcggt tgtgaacagc ctcccggctg tgggaagggg
     1081 agcaggacag acggcaggga ggcgccaggg agggaagcac ggccatctcc tctacctctc
     1141 acccccttgc tcggtcccct gaaagtctgc cgagccaagg aggggccctg gtggtaacca
     1201 ctaaccttgg atcagccagc agggcccctg gcgtgtggcc tccagtcctc ctccccggcc
     1261 tttcccagct cgccgtgtcc acgcaggacc tcatgggggc ctggggtcca caggttccca
     1321 agctgagttc acgacagcca agccctgagc gtccctcgcc gacccagcct gggggccgcg
     1381 ccctgagccc tgccgctggt gggggactta gccccggctg ccacagctaa gtaccaccga
     1441 caggacgggg gcgcctgacc agtcggcgtg gatcttctca cagatgtgga ggccagagtc
     1501 catggtcagg gtgctgacag tgttggtttc cctgagtctc tctccttggc ttgcaggcgg
     1561 ccgcccctgc acacgcaccc tgctgtctgt ccctctcctc atcaggttgc atcagaaccc
     1621 caccctgacg gctttatttt gcctctttag aggcctggtc tccaaatcca ttcccgtcct
     1681 gacgtactgg ggttcggggc ttcagcgtgt catcgtggag gggacaccag gagcaagccc
     1741 accgcgtgct gggcttgtgg aactctgaac tggtcgtttt ggtgaacctg cctgagggac
     1801 acaggaggcc cagtccgtgt ccagttcggc cgctttcgtc tgcacttacg agtggggcaa
     1861 ggaccacgtc cctaatcact gcccagcacc acctgtcgta tccagttgag ccgggtccag
     1921 gccgttgccc cagagctgct tctacttgat gctggccaac acctcctgac gctcatgtgt
     1981 cgcttgtcct gggtcccttc caaggaccag agctgggtgc ctagggctgg agctgttcgg
     2041 gaaccagcct tccctcgtga gatgagagcc ttgctcacgt agcccagatg ccccctggag
     2101 cacggagacc acagtggcag agtcgtggaa gggcattgta gccaaacatc cttcgagggt
     2161 ttcctcaaat cagcagctgc ccagtgggcc cagctgaccc tgctgaagtt ggtgtctcta
     2221 gcaggcccag aacccccgag cagcccaggg gaccctcccc ggacctttgc gatcagttat
     2281 cctgaccccc ttcccgtaga cagggaaccg agggcagccc cacacctgag ctgggctctg
     2341 aacactgagt tgtccggtgg gttctccgga ccccgcaggt gatggggtcc tcttggcaca
     2401 aacggagccg caggcaggga agggctggag agctgccagc gcggggcact tcgtggtgaa
     2461 gtgctggctg gtggtagaga gggagggatg cttacagcgc gcagcccgta ttcatctccc
     2521 tgacactcaa ggccatcacc gtgtgaccca gtctgcctaa catccagtcc tcccaccctt
     2581 tatacagaca ctttctggcc cgattcacac actctgtcct cctaagacgt cacgcatgtt
     2641 tctcccatgg ccctcgctct ccctcccagg tgacctgcag atcttacatc ctcatcactt
     2701 gtcaaatgag cgcgtgccgt gtgaaacctt gagggaagta tgctgtttct agaaggagcc
     2761 agatctctcc tctcatccct gcccccaaga tgcttttaca tcaggggtcc ctttgtgcct
     2821 gaggcagtta atcctagcag cttctccatc ccgatcttgt tagctgagca ttttctgatc
     2881 acactatcgt cctcctggca gttcccaaac cagatctgga ttcatatgtg tttctgaggg
     2941 tgaaagagcg acaggaaaac atactggtag aaccggaaac agatgagcag agggactacg
     3001 tgatcgacct ggaggagggc tcacagcact tgatccgata caaaaccatc gcacccctgg
     3061 tcgcttctgg agccgtacag ctgatttaaa accggaagca actaaccaag agtgaggacg
     3121 tggaacgttt ttggagagcg tatttggaaa ccccccgtgt cagctggtgc ccgaggacgg
     3181 gaacttttcc cggcagtgcc gtgggtcact ggggcattga gatctgctcg gggcagaccc
     3241 tccctggctg ctccagccag gatcagcagg tggggtgatc gctctgccga ccccgcggct
     3301 gggcagggac acggaagcgc ccttcgtggt ggtgtttgaa ctgaggaaag tgaggccgag
     3361 ggggtgcata gaaaggccgc gctgcctgtg atgaggggac tggtgggccc caacctgaca
     3421 gcggcagcag cactccctca accctcctgg taggaagagt gtaaatagat taaaccgtgg
     3481 ggccgccctg tatagtatgt cactgactcg tgtaaactca gcttctggag cctctgctct
     3541 cgcacttaaa gccaacttct gtcgtgccta actgagcatc acaaccgata aactagtaac
     3601 taggtctcgg cttcatggca gaaggagccc gtgggcagtt cccagcgtgt agtctagtga
     3661 ggtgcatcct ccccgccgcg aactgcagcg tcgggcggtc catgtgccgg ccttgaccag
     3721 ggccccgggg gcggagcagc agcagctctc ctacgccgcc acctcagcgg cagctgttcc
     3781 tttttaggct cttcacgttc tcaaggggaa tagatgaaat taacctcggc gagtggacag
     3841 tgtctcggtg acacccgagg agggatgtgc acacgtgaat cgtcttccct tggaacgtga
     3901 tacagagcaa ctgccttcca gtcttgctca acgcaaaggc aggttttcat ctgcgtgatg
     3961 ttgggtcttg gagtaatcag tgtgatattg ctgtcatttc caagagaaat cactaagtga
     4021 aagcaaggaa ggttttattc gttaataaaa acgttttata tctca
//
LOCUS       XM_032618567            3100 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 97
            (CFAP97), transcript variant X1, mRNA.
ACCESSION   XM_032618567
VERSION     XM_032618567.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3100
                     /gene="CFAP97"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 15 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746845"
     CDS             132..1727
                     /gene="CFAP97"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 97
                     isoform X1"
                     /protein_id="XP_032474458.1"
                     /db_xref="GeneID:116746845"
                     /translation="MFAVMDQFGDISEGEVDHSFFDSDFEEAKKCESNSVFDKQNDDA
                     EERIDKDTENVNLKFGIQRRKSDLTEEGTERNEKISPEEHPIENDNIQTRNSLSLTTS
                     SRSKLCDATVEHKIHLPIPSSIPKIVKEGERDYYTDGEESSDDEKKHHVRSKSAKPSN
                     NFKKSVSKKDSRSNSSSSLSSSSSSSDTDCSNTGSDVCLSDSSPSLKKRLSGVTHLPP
                     KQKYKQGEKSTGAQTSGTKPKVGDYTEESEDTVTDVTPLSTPDISPVQSFELAASNDQ
                     KMKVKRQENVSQEVYENVEDLKNNSKSLKSDKKGKEKHEPSVASVSAVLDSSLDHRYK
                     EKVLHDTMDLNHLLKAFLQLDKKGPQKHHFDQPSVAPRKNYSFTREEVRQIDRENQRL
                     LKELSRQAEKPGSKSTIPRRSTGPPPKLYHSALNRQREQQRIERENLALLKRLEAVKP
                     TVGMKRSEQLTDYHRNMGYLSSSPTSRRVRSTLGQYSPLRGASRTSSATSGLSCKSEQ
                     SAFDTSSGLSLRPKPPNVRTAWL"
     misc_feature    1161..1469
                     /gene="CFAP97"
                     /note="Hemingway/CFA97; Region: Hmw_CFAP97; pfam13879"
                     /db_xref="CDD:464014"
ORIGIN      
        1 cgcctccgga agctcgagcc gccgccgggg ccgcgtggag gggctgcggg agcgcgtgcg
       61 cgtgcgcgtg cgcgaggccg gaacgccgcg ggcggcgctg ggctgctgcg gtggtcgcgg
      121 ttcccagata tatgtttgcc gtcatggatc agtttggaga tatatcagaa ggtgaagtgg
      181 accattcttt ctttgacagt gactttgaag aagcaaagaa atgtgaaagt aactcagttt
      241 ttgacaagca aaatgatgac gctgaagaga gaatagataa agatacggaa aatgtaaact
      301 tgaaatttgg aatacagaga aggaaaagtg atcttactga ggagggaact gaaagaaatg
      361 agaaaatttc tccagaagaa caccccatag aaaatgataa tatacaaact aggaattctt
      421 tgtccttgac cacttcttca cgatcaaaat tgtgtgatgc tacagtagaa cataaaatac
      481 acttgcccat cccaagtagc attcccaaaa ttgtaaaaga aggtgaacgt gattactata
      541 cagatggaga ggaaagcagt gatgatgaga aaaagcatca tgtcagatca aagtcagcta
      601 aaccatctaa taacttcaag aaaagcgtaa gtaaaaagga ttccagaagt aattcctctt
      661 cctctctgtc ctcctcgtct tcaagttctg atacagactg ttcaaatacc gggtctgatg
      721 tctgtttatc tgattcatct ccatcattaa agaagcgtct ctctggtgta acccacttgc
      781 caccaaaaca gaaatataaa cagggagaaa aatcaacagg agcgcaaact tcgggtacta
      841 agccaaaagt cggtgactac accgaggaat ctgaagatac tgtgacagat gtcactcctt
      901 tatcgactcc ggacatcagc cctgttcagt cttttgaact ggctgcatca aacgatcaaa
      961 aaatgaaagt taaaaggcaa gagaacgtga gtcaagaagt atatgaaaat gttgaggatt
     1021 taaaaaataa ttcaaagtct ttgaaatcag acaaaaaagg gaaagaaaaa catgagccca
     1081 gtgttgcctc agtgtcggca gtgttggatt ccagtttaga ccacagatac aaggaaaaag
     1141 tcttacatga cacaatggac ctgaatcatc ttttaaaagc ttttctgcaa ttagataaaa
     1201 agggaccaca aaaacatcac tttgatcagc cttcagtagc acctaggaaa aactactctt
     1261 tcacaagaga ggaggtgaga cagattgatc gggaaaatca gaggcttttg aaagaactgt
     1321 cgagacaggc tgaaaaacca ggaagcaaaa gtacgattcc aagaagatcg actggtcctc
     1381 cacctaagtt atatcatagt gctctcaaca gacagaggga acaacaaagg attgaaagag
     1441 aaaatttggc tttattgaag cggcttgaag ctgtgaaacc aacagttggt atgaaacgct
     1501 cagaacagct gacagactat caccgcaaca tgggttatct cagctcatcc ccgacctcca
     1561 gacgagtgag gtccactctt ggccagtaca gcccgttaag aggagcttcc aggacatcca
     1621 gtgctaccag tggtctcagt tgtaagagtg agcaatcagc gtttgacaca tccagtggcc
     1681 tgtcactaag acctaagccc cctaatgtcc gtacagcttg gttataaaaa ctttttactt
     1741 taaacattga tcatcaaatt ctcattgaag tgcttttgta tattactatc attctctgta
     1801 taaacatcta aatacttctt taagcaattt aaggtgtaca acagtgactt gtaatttatt
     1861 gtaatttgat gcaaaattgt tttgaaaaag acaattaaat ataaaatcag tgtttcctgt
     1921 gaggaggagt ttataggaga cttgtatgta ttttacagag aaatggtagt atgcccgtgt
     1981 gttttctcaa catagaaatt ggttcagctg tcagactgac aaaacagttg tgatagcatc
     2041 gctgaatgtt ggacccaaga tgttagctat atagttcttg tttgttgttt ttttcatttc
     2101 ttgtaagctt tataccatga gcatagctcc tgactgactt tgttttctct ttgcttcaga
     2161 acttgggcag tgtgacttat aacttaatta taagatagtt attatgaaac aaatcttgaa
     2221 atttgttttc attggtggag ctgatttaga tttgatgagc agattgagtg aagcttgaac
     2281 tggggcaatc cttgtgattg accagaggtg cctactactt ccgtagaagg gaactgagtt
     2341 agagctcaaa cacgttatca accattctga accatttcaa actgtattag aaagctcaac
     2401 ttagaagctc ctctttcatg tttttatata ttcagggaaa gtaatgattc tgagaaatta
     2461 ggtttcttta gagctactgc attgtgaata gtttgtccaa ggaccagatc atcataagca
     2521 aaagcaagta tctattgaat cagcaaaata gcaccaccag tttgaagagc caagaagcag
     2581 atcctgagtt gtgttttaag tgatgctgtt aatgagttgt gttatactta gagtttattg
     2641 ttttaagtga gaagaaaaga aagaaatgca ttgtctcgca gctgtagaaa ttccagctag
     2701 tgtttttaag ggctgaaaaa taaaactaaa aatgtgaatg ataaagggga aaaaaatcac
     2761 gtttgttgag gctactttaa atgtcagcta actttcttgc tttgttttgg tttgggcatt
     2821 tgtgttgaat cctggaagta tcatttttat cagtcccact tttaaagtcc taataacctt
     2881 aaatagaagt agtaatggcg agtagggtgt aatatagttg acttttaaaa ttagaatatt
     2941 tttctgtcaa tctctaaagg ctcttatatt atacaacaaa gtatatctag gtcatgttgc
     3001 ttctgctctc ctaattatca ctgttttcat tactggcctt ttctgtatac cttaaaatgt
     3061 attggaaagt ttctatatta aatgctagat ctttcttttt
//
LOCUS       XM_032618568            3156 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 97
            (CFAP97), transcript variant X2, mRNA.
ACCESSION   XM_032618568
VERSION     XM_032618568.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3156
                     /gene="CFAP97"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746845"
     CDS             188..1783
                     /gene="CFAP97"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 97
                     isoform X1"
                     /protein_id="XP_032474459.1"
                     /db_xref="GeneID:116746845"
                     /translation="MFAVMDQFGDISEGEVDHSFFDSDFEEAKKCESNSVFDKQNDDA
                     EERIDKDTENVNLKFGIQRRKSDLTEEGTERNEKISPEEHPIENDNIQTRNSLSLTTS
                     SRSKLCDATVEHKIHLPIPSSIPKIVKEGERDYYTDGEESSDDEKKHHVRSKSAKPSN
                     NFKKSVSKKDSRSNSSSSLSSSSSSSDTDCSNTGSDVCLSDSSPSLKKRLSGVTHLPP
                     KQKYKQGEKSTGAQTSGTKPKVGDYTEESEDTVTDVTPLSTPDISPVQSFELAASNDQ
                     KMKVKRQENVSQEVYENVEDLKNNSKSLKSDKKGKEKHEPSVASVSAVLDSSLDHRYK
                     EKVLHDTMDLNHLLKAFLQLDKKGPQKHHFDQPSVAPRKNYSFTREEVRQIDRENQRL
                     LKELSRQAEKPGSKSTIPRRSTGPPPKLYHSALNRQREQQRIERENLALLKRLEAVKP
                     TVGMKRSEQLTDYHRNMGYLSSSPTSRRVRSTLGQYSPLRGASRTSSATSGLSCKSEQ
                     SAFDTSSGLSLRPKPPNVRTAWL"
     misc_feature    1217..1525
                     /gene="CFAP97"
                     /note="Hemingway/CFA97; Region: Hmw_CFAP97; pfam13879"
                     /db_xref="CDD:464014"
ORIGIN      
        1 cgggagcgcg tgcgcgtgcg cgtgcgcgag gccggaacgc cgcgggcggc gctgggctgc
       61 tgcggtggtc gcggttccca ggtgagcggc gcgcgggtga cccttcctcc cctcgtagaa
      121 cccccgcccc ccgttcagga tcctttttcc tctccggagc ccaggcctcg gcgagcacgc
      181 aggatatatg tttgccgtca tggatcagtt tggagatata tcagaaggtg aagtggacca
      241 ttctttcttt gacagtgact ttgaagaagc aaagaaatgt gaaagtaact cagtttttga
      301 caagcaaaat gatgacgctg aagagagaat agataaagat acggaaaatg taaacttgaa
      361 atttggaata cagagaagga aaagtgatct tactgaggag ggaactgaaa gaaatgagaa
      421 aatttctcca gaagaacacc ccatagaaaa tgataatata caaactagga attctttgtc
      481 cttgaccact tcttcacgat caaaattgtg tgatgctaca gtagaacata aaatacactt
      541 gcccatccca agtagcattc ccaaaattgt aaaagaaggt gaacgtgatt actatacaga
      601 tggagaggaa agcagtgatg atgagaaaaa gcatcatgtc agatcaaagt cagctaaacc
      661 atctaataac ttcaagaaaa gcgtaagtaa aaaggattcc agaagtaatt cctcttcctc
      721 tctgtcctcc tcgtcttcaa gttctgatac agactgttca aataccgggt ctgatgtctg
      781 tttatctgat tcatctccat cattaaagaa gcgtctctct ggtgtaaccc acttgccacc
      841 aaaacagaaa tataaacagg gagaaaaatc aacaggagcg caaacttcgg gtactaagcc
      901 aaaagtcggt gactacaccg aggaatctga agatactgtg acagatgtca ctcctttatc
      961 gactccggac atcagccctg ttcagtcttt tgaactggct gcatcaaacg atcaaaaaat
     1021 gaaagttaaa aggcaagaga acgtgagtca agaagtatat gaaaatgttg aggatttaaa
     1081 aaataattca aagtctttga aatcagacaa aaaagggaaa gaaaaacatg agcccagtgt
     1141 tgcctcagtg tcggcagtgt tggattccag tttagaccac agatacaagg aaaaagtctt
     1201 acatgacaca atggacctga atcatctttt aaaagctttt ctgcaattag ataaaaaggg
     1261 accacaaaaa catcactttg atcagccttc agtagcacct aggaaaaact actctttcac
     1321 aagagaggag gtgagacaga ttgatcggga aaatcagagg cttttgaaag aactgtcgag
     1381 acaggctgaa aaaccaggaa gcaaaagtac gattccaaga agatcgactg gtcctccacc
     1441 taagttatat catagtgctc tcaacagaca gagggaacaa caaaggattg aaagagaaaa
     1501 tttggcttta ttgaagcggc ttgaagctgt gaaaccaaca gttggtatga aacgctcaga
     1561 acagctgaca gactatcacc gcaacatggg ttatctcagc tcatccccga cctccagacg
     1621 agtgaggtcc actcttggcc agtacagccc gttaagagga gcttccagga catccagtgc
     1681 taccagtggt ctcagttgta agagtgagca atcagcgttt gacacatcca gtggcctgtc
     1741 actaagacct aagcccccta atgtccgtac agcttggtta taaaaacttt ttactttaaa
     1801 cattgatcat caaattctca ttgaagtgct tttgtatatt actatcattc tctgtataaa
     1861 catctaaata cttctttaag caatttaagg tgtacaacag tgacttgtaa tttattgtaa
     1921 tttgatgcaa aattgttttg aaaaagacaa ttaaatataa aatcagtgtt tcctgtgagg
     1981 aggagtttat aggagacttg tatgtatttt acagagaaat ggtagtatgc ccgtgtgttt
     2041 tctcaacata gaaattggtt cagctgtcag actgacaaaa cagttgtgat agcatcgctg
     2101 aatgttggac ccaagatgtt agctatatag ttcttgtttg ttgttttttt catttcttgt
     2161 aagctttata ccatgagcat agctcctgac tgactttgtt ttctctttgc ttcagaactt
     2221 gggcagtgtg acttataact taattataag atagttatta tgaaacaaat cttgaaattt
     2281 gttttcattg gtggagctga tttagatttg atgagcagat tgagtgaagc ttgaactggg
     2341 gcaatccttg tgattgacca gaggtgccta ctacttccgt agaagggaac tgagttagag
     2401 ctcaaacacg ttatcaacca ttctgaacca tttcaaactg tattagaaag ctcaacttag
     2461 aagctcctct ttcatgtttt tatatattca gggaaagtaa tgattctgag aaattaggtt
     2521 tctttagagc tactgcattg tgaatagttt gtccaaggac cagatcatca taagcaaaag
     2581 caagtatcta ttgaatcagc aaaatagcac caccagtttg aagagccaag aagcagatcc
     2641 tgagttgtgt tttaagtgat gctgttaatg agttgtgtta tacttagagt ttattgtttt
     2701 aagtgagaag aaaagaaaga aatgcattgt ctcgcagctg tagaaattcc agctagtgtt
     2761 tttaagggct gaaaaataaa actaaaaatg tgaatgataa aggggaaaaa aatcacgttt
     2821 gttgaggcta ctttaaatgt cagctaactt tcttgctttg ttttggtttg ggcatttgtg
     2881 ttgaatcctg gaagtatcat ttttatcagt cccactttta aagtcctaat aaccttaaat
     2941 agaagtagta atggcgagta gggtgtaata tagttgactt ttaaaattag aatatttttc
     3001 tgtcaatctc taaaggctct tatattatac aacaaagtat atctaggtca tgttgcttct
     3061 gctctcctaa ttatcactgt tttcattact ggccttttct gtatacctta aaatgtattg
     3121 gaaagtttct atattaaatg ctagatcttt cttttt
//
LOCUS       XM_032618569            2840 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 97
            (CFAP97), transcript variant X3, mRNA.
ACCESSION   XM_032618569
VERSION     XM_032618569.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2840
                     /gene="CFAP97"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746845"
     CDS             132..1724
                     /gene="CFAP97"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 97
                     isoform X2"
                     /protein_id="XP_032474460.1"
                     /db_xref="GeneID:116746845"
                     /translation="MFAVMDQFGDISEGEVDHSFFDSDFEEAKKCESNSVFDKQNDDA
                     EERIDKDTENVNLKFGIQRRKSDLTEEGTERNEKISPEEHPIENDNIQTRNSLSLTTS
                     SRSKLCDATVEHKIHLPIPSSIPKIVKEGERDYYTDGEESSDDEKKHHVRSKSAKPSN
                     NFKKSVSKKDSRSNSSSSLSSSSSSSDTDCSNTGSDVCLSDSSPSLKKRLSGVTHLPP
                     KQKYKQGEKSTGAQTSGTKPKVGDYTEESEDTVTDVTPLSTPDISPVQSFELAASNDQ
                     KMKVKRQENVSQEVYENVEDLKNNSKSLKSDKKGKEKHEPSVASVSAVLDSSLDHRYK
                     EKVLHDTMDLNHLLKAFLQLDKKGPQKHHFDQPSVAPRKNYSFTREEVRQIDRENQRL
                     LKELSRQAEKPGSKSTIPRRSTGPPPKLYHSALNRQREQQRIERENLALLKRLEAVKP
                     TVGMKRSEQLTDYHRNMGYLSSSPTSRRVRSTLGQYSPLRGASRTSSATSGLSCKSEQ
                     SAFDTSSGLSLRPKPPNGFNLK"
     misc_feature    1161..1469
                     /gene="CFAP97"
                     /note="Hemingway/CFA97; Region: Hmw_CFAP97; pfam13879"
                     /db_xref="CDD:464014"
ORIGIN      
        1 cgcctccgga agctcgagcc gccgccgggg ccgcgtggag gggctgcggg agcgcgtgcg
       61 cgtgcgcgtg cgcgaggccg gaacgccgcg ggcggcgctg ggctgctgcg gtggtcgcgg
      121 ttcccagata tatgtttgcc gtcatggatc agtttggaga tatatcagaa ggtgaagtgg
      181 accattcttt ctttgacagt gactttgaag aagcaaagaa atgtgaaagt aactcagttt
      241 ttgacaagca aaatgatgac gctgaagaga gaatagataa agatacggaa aatgtaaact
      301 tgaaatttgg aatacagaga aggaaaagtg atcttactga ggagggaact gaaagaaatg
      361 agaaaatttc tccagaagaa caccccatag aaaatgataa tatacaaact aggaattctt
      421 tgtccttgac cacttcttca cgatcaaaat tgtgtgatgc tacagtagaa cataaaatac
      481 acttgcccat cccaagtagc attcccaaaa ttgtaaaaga aggtgaacgt gattactata
      541 cagatggaga ggaaagcagt gatgatgaga aaaagcatca tgtcagatca aagtcagcta
      601 aaccatctaa taacttcaag aaaagcgtaa gtaaaaagga ttccagaagt aattcctctt
      661 cctctctgtc ctcctcgtct tcaagttctg atacagactg ttcaaatacc gggtctgatg
      721 tctgtttatc tgattcatct ccatcattaa agaagcgtct ctctggtgta acccacttgc
      781 caccaaaaca gaaatataaa cagggagaaa aatcaacagg agcgcaaact tcgggtacta
      841 agccaaaagt cggtgactac accgaggaat ctgaagatac tgtgacagat gtcactcctt
      901 tatcgactcc ggacatcagc cctgttcagt cttttgaact ggctgcatca aacgatcaaa
      961 aaatgaaagt taaaaggcaa gagaacgtga gtcaagaagt atatgaaaat gttgaggatt
     1021 taaaaaataa ttcaaagtct ttgaaatcag acaaaaaagg gaaagaaaaa catgagccca
     1081 gtgttgcctc agtgtcggca gtgttggatt ccagtttaga ccacagatac aaggaaaaag
     1141 tcttacatga cacaatggac ctgaatcatc ttttaaaagc ttttctgcaa ttagataaaa
     1201 agggaccaca aaaacatcac tttgatcagc cttcagtagc acctaggaaa aactactctt
     1261 tcacaagaga ggaggtgaga cagattgatc gggaaaatca gaggcttttg aaagaactgt
     1321 cgagacaggc tgaaaaacca ggaagcaaaa gtacgattcc aagaagatcg actggtcctc
     1381 cacctaagtt atatcatagt gctctcaaca gacagaggga acaacaaagg attgaaagag
     1441 aaaatttggc tttattgaag cggcttgaag ctgtgaaacc aacagttggt atgaaacgct
     1501 cagaacagct gacagactat caccgcaaca tgggttatct cagctcatcc ccgacctcca
     1561 gacgagtgag gtccactctt ggccagtaca gcccgttaag aggagcttcc aggacatcca
     1621 gtgctaccag tggtctcagt tgtaagagtg agcaatcagc gtttgacaca tccagtggcc
     1681 tgtcactaag acctaagccc cctaatgggt tcaacttgaa gtagaagtca ggaagagcaa
     1741 caatattcat cttttcaaag tggaatttac aattctgttg tcatgattcg tttatatggt
     1801 aagtataaat agagggacag gagttgaaaa atgtgatatt ctctgatata agtcaaggta
     1861 cttctaagat gtcatggttt aaggggtatt tttatgaagg aatcataagt atactatttt
     1921 cattttcaag aacataaaaa aagtgtagga tcctctagca ctactttaca tttggttcac
     1981 ttgaacctaa gatatatatt ttgaagattg acacgtgcaa ctagaaatta tactaatcca
     2041 aggtctacaa ttactaggca gggttcttat tgagagttat tttcatatct ttgaaatgtt
     2101 aaactgatgt tacatccttt ttaataagat tctatgaaag attttttttt tttttttttt
     2161 tttgcggtat gcgggcctct cactgttgtg gcctctcccg ttgcggagca caggctccgg
     2221 acgcgcaggc tcagcggcca tggctcacgg ggccagtcgc tccgcggcat gtgggatcct
     2281 cccggaccgg ggcacgaacc cgtgtcccct gcatcggcag gcggactctc aaccactgag
     2341 ctaccaggga agacctatga aagattttga actattaaag ttattttcta agggatagca
     2401 attacctcat acttccccta cttccttttt tcaatctcca taaaaagctg ctttcttagc
     2461 tactactctg aatgaaattt ttcttatttg cttataaatg tagtgtaatg cagttgtttt
     2521 cagcttgtta acccaaatgt ccaaaatgga tacctagata actttaaaaa gaggtcattg
     2581 ggatggacat gattgtgtac ttctcatctt caaattcaag tactgcacag tgtgaaaagg
     2641 attatgacca gtatgaagct ggagacacaa gtttaagtta ttctgtttta ataatttaat
     2701 tcataaaatg tttaatatct taaatgccaa agtctaaacc tataaatgat tgtaaaccat
     2761 cctagaaaat gtgcttaatg gtcatgaata ctttatttct atgaataaag atagtaagaa
     2821 aattaaaaat caacatcctt
//
LOCUS       XM_032618570            3085 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cilia and flagella associated protein 97
            (CFAP97), transcript variant X4, mRNA.
ACCESSION   XM_032618570
VERSION     XM_032618570.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3085
                     /gene="CFAP97"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746845"
     CDS             132..1712
                     /gene="CFAP97"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 97
                     isoform X3"
                     /protein_id="XP_032474461.1"
                     /db_xref="GeneID:116746845"
                     /translation="MFAVMDQFGDISEGEVDHSFFDSDFEEAKKCESNSVFDKQNDDA
                     EERIDKDTENVNLKFGIQRRKSDLTEEGTERNEKISPEEHPIENDNIQTRNSLSLTTS
                     SRSKLCDATVEHKIHLPIPSSIPKIVKEGERDYYTDGEESSDDEKKHHVRSKSAKPSN
                     NFKKSVSKKDSRSNSSSSLSSSSSSSDTDCSNTGSDVCLSDSSPSLKKRLSGVTHLPP
                     KQKYKQGEKSTGAQTSGTKPKVGDYTEESEDTVTDVTPLSTPDISPVQSFELAASNDQ
                     KMKVKRQENVSQEVYENVEDLKNNSKSLKSDKKGKEKHEPSVASVSAVLDSSLDHRYK
                     EKVLHDTMDLNHLLKDKKGPQKHHFDQPSVAPRKNYSFTREEVRQIDRENQRLLKELS
                     RQAEKPGSKSTIPRRSTGPPPKLYHSALNRQREQQRIERENLALLKRLEAVKPTVGMK
                     RSEQLTDYHRNMGYLSSSPTSRRVRSTLGQYSPLRGASRTSSATSGLSCKSEQSAFDT
                     SSGLSLRPKPPNVRTAWL"
     misc_feature    1179..1454
                     /gene="CFAP97"
                     /note="Hemingway/CFA97; Region: Hmw_CFAP97; pfam13879"
                     /db_xref="CDD:464014"
ORIGIN      
        1 cgcctccgga agctcgagcc gccgccgggg ccgcgtggag gggctgcggg agcgcgtgcg
       61 cgtgcgcgtg cgcgaggccg gaacgccgcg ggcggcgctg ggctgctgcg gtggtcgcgg
      121 ttcccagata tatgtttgcc gtcatggatc agtttggaga tatatcagaa ggtgaagtgg
      181 accattcttt ctttgacagt gactttgaag aagcaaagaa atgtgaaagt aactcagttt
      241 ttgacaagca aaatgatgac gctgaagaga gaatagataa agatacggaa aatgtaaact
      301 tgaaatttgg aatacagaga aggaaaagtg atcttactga ggagggaact gaaagaaatg
      361 agaaaatttc tccagaagaa caccccatag aaaatgataa tatacaaact aggaattctt
      421 tgtccttgac cacttcttca cgatcaaaat tgtgtgatgc tacagtagaa cataaaatac
      481 acttgcccat cccaagtagc attcccaaaa ttgtaaaaga aggtgaacgt gattactata
      541 cagatggaga ggaaagcagt gatgatgaga aaaagcatca tgtcagatca aagtcagcta
      601 aaccatctaa taacttcaag aaaagcgtaa gtaaaaagga ttccagaagt aattcctctt
      661 cctctctgtc ctcctcgtct tcaagttctg atacagactg ttcaaatacc gggtctgatg
      721 tctgtttatc tgattcatct ccatcattaa agaagcgtct ctctggtgta acccacttgc
      781 caccaaaaca gaaatataaa cagggagaaa aatcaacagg agcgcaaact tcgggtacta
      841 agccaaaagt cggtgactac accgaggaat ctgaagatac tgtgacagat gtcactcctt
      901 tatcgactcc ggacatcagc cctgttcagt cttttgaact ggctgcatca aacgatcaaa
      961 aaatgaaagt taaaaggcaa gagaacgtga gtcaagaagt atatgaaaat gttgaggatt
     1021 taaaaaataa ttcaaagtct ttgaaatcag acaaaaaagg gaaagaaaaa catgagccca
     1081 gtgttgcctc agtgtcggca gtgttggatt ccagtttaga ccacagatac aaggaaaaag
     1141 tcttacatga cacaatggac ctgaatcatc ttttaaaaga taaaaaggga ccacaaaaac
     1201 atcactttga tcagccttca gtagcaccta ggaaaaacta ctctttcaca agagaggagg
     1261 tgagacagat tgatcgggaa aatcagaggc ttttgaaaga actgtcgaga caggctgaaa
     1321 aaccaggaag caaaagtacg attccaagaa gatcgactgg tcctccacct aagttatatc
     1381 atagtgctct caacagacag agggaacaac aaaggattga aagagaaaat ttggctttat
     1441 tgaagcggct tgaagctgtg aaaccaacag ttggtatgaa acgctcagaa cagctgacag
     1501 actatcaccg caacatgggt tatctcagct catccccgac ctccagacga gtgaggtcca
     1561 ctcttggcca gtacagcccg ttaagaggag cttccaggac atccagtgct accagtggtc
     1621 tcagttgtaa gagtgagcaa tcagcgtttg acacatccag tggcctgtca ctaagaccta
     1681 agccccctaa tgtccgtaca gcttggttat aaaaactttt tactttaaac attgatcatc
     1741 aaattctcat tgaagtgctt ttgtatatta ctatcattct ctgtataaac atctaaatac
     1801 ttctttaagc aatttaaggt gtacaacagt gacttgtaat ttattgtaat ttgatgcaaa
     1861 attgttttga aaaagacaat taaatataaa atcagtgttt cctgtgagga ggagtttata
     1921 ggagacttgt atgtatttta cagagaaatg gtagtatgcc cgtgtgtttt ctcaacatag
     1981 aaattggttc agctgtcaga ctgacaaaac agttgtgata gcatcgctga atgttggacc
     2041 caagatgtta gctatatagt tcttgtttgt tgtttttttc atttcttgta agctttatac
     2101 catgagcata gctcctgact gactttgttt tctctttgct tcagaacttg ggcagtgtga
     2161 cttataactt aattataaga tagttattat gaaacaaatc ttgaaatttg ttttcattgg
     2221 tggagctgat ttagatttga tgagcagatt gagtgaagct tgaactgggg caatccttgt
     2281 gattgaccag aggtgcctac tacttccgta gaagggaact gagttagagc tcaaacacgt
     2341 tatcaaccat tctgaaccat ttcaaactgt attagaaagc tcaacttaga agctcctctt
     2401 tcatgttttt atatattcag ggaaagtaat gattctgaga aattaggttt ctttagagct
     2461 actgcattgt gaatagtttg tccaaggacc agatcatcat aagcaaaagc aagtatctat
     2521 tgaatcagca aaatagcacc accagtttga agagccaaga agcagatcct gagttgtgtt
     2581 ttaagtgatg ctgttaatga gttgtgttat acttagagtt tattgtttta agtgagaaga
     2641 aaagaaagaa atgcattgtc tcgcagctgt agaaattcca gctagtgttt ttaagggctg
     2701 aaaaataaaa ctaaaaatgt gaatgataaa ggggaaaaaa atcacgtttg ttgaggctac
     2761 tttaaatgtc agctaacttt cttgctttgt tttggtttgg gcatttgtgt tgaatcctgg
     2821 aagtatcatt tttatcagtc ccacttttaa agtcctaata accttaaata gaagtagtaa
     2881 tggcgagtag ggtgtaatat agttgacttt taaaattaga atatttttct gtcaatctct
     2941 aaaggctctt atattataca acaaagtata tctaggtcat gttgcttctg ctctcctaat
     3001 tatcactgtt ttcattactg gccttttctg tataccttaa aatgtattgg aaagtttcta
     3061 tattaaatgc tagatctttc ttttt
//
LOCUS       XM_032618571            1348 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glutamic-oxaloacetic transaminase 1 like
            1 (GOT1L1), mRNA.
ACCESSION   XM_032618571
VERSION     XM_032618571.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1348
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1348
                     /gene="GOT1L1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 8%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746847"
     CDS             29..1303
                     /gene="GOT1L1"
                     /codon_start=1
                     /product="putative aspartate aminotransferase, cytoplasmic
                     2"
                     /protein_id="XP_032474462.1"
                     /db_xref="GeneID:116746847"
                     /translation="MLQSSSLRERKQSWLYFPSTMSVFTDVPLAQKLEGSLLKTYKQD
                     DHPNKTFLAYKACMTSQGQPWVSSVVHKTRMQIAQDPSLTYEYTPVMGMKSFIQASLN
                     LLFGKDSQVIMENRAGGVHTVGDSGAFQLGAQFLKTWRRDSQIVYIISSQKEPHGLVF
                     QDMGFTVYEHIFWDSARLCLDPSMLLDVVEQAPHGCIFVIGNIGNCKLTEGQWTQLMV
                     LMKSKQIFPFFDIPYQGLATGDLEEDARFLQYFVSRGFEFFCSQYLSKNFGIYDEGVG
                     ILVVVALSNELLLCVLSQLMDFVRALWLNPPTTGARIITSVLCNPAMQGEWKQSLKGV
                     VENVMMTKEKVKEKLRLLGTPGSWDHITEQKGSHSYLGLNPQQVDYLVKKKHIYIPKN
                     GRINFTCINSYNIDYITESITEAVLFTKDSEK"
     misc_feature    86..1276
                     /gene="GOT1L1"
                     /note="Aspartate aminotransferase (AAT) superfamily (fold
                     type I) of pyridoxal phosphate (PLP)-dependent enzymes.
                     PLP combines with an alpha-amino acid to form a compound
                     called a Schiff base or aldimine intermediate, which
                     depending on the reaction, is the...; Region: AAT_I;
                     cl18945"
                     /db_xref="CDD:450240"
     misc_feature    order(401..406,413..415,626..628,716..718,725..727,
                     815..817,824..826)
                     /gene="GOT1L1"
                     /note="pyridoxal 5'-phosphate binding pocket [chemical
                     binding]; other site"
                     /db_xref="CDD:99742"
     misc_feature    824..826
                     /gene="GOT1L1"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99742"
ORIGIN      
        1 ctggtccgtc gggtccagac ttggaggaat gctgcagagc agcagccttc gggagcggaa
       61 gcagtcttgg ctctactttc cctcaacgat gtctgtgttc acggatgtgc ccctagccca
      121 gaagctagaa ggcagcttgc tgaagaccta caaacaagat gaccacccta acaagacgtt
      181 cctggcctat aaagcctgca tgaccagcca aggccagccc tgggtgtcct ctgtcgtgca
      241 caagacccga atgcagatcg cccaggatcc ctcactgacc tatgagtaca cgccagtgat
      301 gggcatgaaa tcattcatcc aggcctcctt gaacctcctc tttgggaagg acagccaagt
      361 cattatggag aacagggcag ggggcgtgca cactgtaggt gacagcggtg ctttccagct
      421 gggggcccag ttcctcaaaa cttggcgtcg ggattctcaa atagtttaca tcatttcttc
      481 tcaaaaagaa ccgcatggac tcgtcttcca ggacatgggc tttacagttt atgaacacat
      541 cttctgggac tctgcacggc tgtgcttgga ccccagcatg ctcctcgatg tggtggagca
      601 ggccccgcat ggctgtatct tcgtgattgg gaacatcggc aactgcaagc tgacagaggg
      661 tcagtggaca cagttgatgg tcctcatgaa gagcaagcag atctttccat tttttgacat
      721 tccctatcaa ggtttagcga ctggtgacct ggaagaagat gctagattct tacaatactt
      781 tgtgtctcga ggctttgagt tcttctgcag ccagtatctg tccaagaact ttggtattta
      841 tgacgaagga gtggggatcc tcgtggtggt ggcactcagt aacgagctcc tgctgtgcgt
      901 cctctcgcag ctgatggact tcgtgcgggc cctgtggcta aaccctccta ccacgggtgc
      961 tcgcattatc acctctgtcc tctgtaaccc ggctatgcag ggagaatgga aacagagtct
     1021 gaaaggggtt gtagagaatg tcatgatgac caaggaaaag gtgaaggaga agctccggct
     1081 cctgggaacc ccaggctcct gggatcacat cactgagcag aaggggtccc atagctatct
     1141 tggactcaac ccccaacagg tggactactt ggtcaagaaa aagcatatct atatccccaa
     1201 gaatgggcgg atcaacttca cctgtatcaa ttcctacaac atagactaca tcactgagag
     1261 catcactgag gctgtcctct tcacaaagga ctcagagaaa tagcttccaa aagtaaatga
     1321 ctcctgattg gaataaaacc tttggtct
//
LOCUS       XM_032618572            2825 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus myotubularin related protein 7 (MTMR7),
            transcript variant X1, mRNA.
ACCESSION   XM_032618572
VERSION     XM_032618572.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2825
                     /gene="MTMR7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 15
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746848"
     CDS             138..2120
                     /gene="MTMR7"
                     /codon_start=1
                     /product="myotubularin-related protein 7 isoform X1"
                     /protein_id="XP_032474463.1"
                     /db_xref="GeneID:116746848"
                     /translation="MEHIRTPKVENVRLVDRISSKKAALGTLYLTATHVIFVENAPDT
                     RKETWILHSQISTIEKQATTATGCPLLIRCKNFQLLQLIIPQERDCHDVYISLIRLAR
                     PVKYEELYCFSFNPKLDREEREQGWMLIDLSEEYKRMGLPNNYWQLSDVNRDYRVCDS
                     YPTELYVPRTATAHIIVGSSKFRSRRRFPVLSYYRKDNHVSICRSSQPLSGFSARCLE
                     DEQMLQAIRKASPGSDFIYVVDTRPKLNAMANRAAGKGYENEDNYSNIKFQFIGIENI
                     HVMRNSLQKMLEVCELKSPSMSDFLSGLENSGWLRHIKAIMDAGIFIAKAVSEEGASV
                     LVHCSDGWDRTAQVCSVASLLLDPHYRTLKGFMVLIEKDWISFGHKFNHRYGNLDGDP
                     KEISPVIDQFIECVWQLMEQFPCAFEFNERFLIHIQHHIYSCQFGNFLCNSQKERQEL
                     KIQERTYSLWAHLWKNRGDYLNPLFRDDPSQTQGTLHLPTTPCNFRYKFWSGMYNRFE
                     KGLQPRQSVTDYLMAVKEETQQLEEELEALEERLEKIQKVQLNRTQVKSKQSEPSRHS
                     GFSTSDNSTANTPQDYSGNMKSFPSRSPSQGDEDSALILTQDNLKSSDPDLSANSDQE
                     SGVEDLSCRSPSGGECVPSEDSGKDRDSDEAVFLTA"
     misc_feature    138..446
                     /gene="MTMR7"
                     /note="Myotubularian (MTM) related 7 protein (MTMR7)
                     Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase
                     activators and Myotubularins (PH-GRAM) domain; Region:
                     PH-GRAM_MTMR7; cd13344"
                     /db_xref="CDD:270152"
     misc_feature    531..1436
                     /gene="MTMR7"
                     /note="protein tyrosine phosphatase-like domain of
                     myotubularin related phosphoinositide phosphatase 7;
                     Region: PTP-MTMR7; cd14583"
                     /db_xref="CDD:350431"
     misc_feature    order(1005..1007,1020..1031,1035..1040,1050..1052,
                     1065..1067)
                     /gene="MTMR7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:350431"
ORIGIN      
        1 cctgagggcg gagctaagcc cgagacccgc ccgctcccgg gcgcgaagcc ccctccccgc
       61 gtccctcccg ccgcgctgca gacgcgcgca ggtacgtgag gcctcacccg cccggaacca
      121 gcagaggcgg gctcgccatg gagcacatcc gcacgcctaa ggttgaaaat gtccgcttgg
      181 tagatcgaat atcttctaaa aaggcagccc ttggtacttt gtatttgacg gctactcatg
      241 tcatatttgt ggaaaatgca cctgacacaa ggaaagaaac atggattctt cacagtcaga
      301 tttccaccat cgagaaacag gcgacaacgg ctaccgggtg ccctctgctc attcgctgca
      361 agaactttca gctcttacag ctcatcatcc ctcaggaaag ggactgccat gacgtttaca
      421 tctctctcat ccgccttgcg aggccagtga aatatgaaga gttatactgc ttttcattca
      481 accccaagct ggatagagaa gaaagggaac aaggctggat gctgatcgat ctcagtgaag
      541 agtacaagcg aatgggcctc cctaataatt actggcagct cagcgatgtg aacagagatt
      601 acagagtctg tgactcttac cctacggagc tgtacgttcc cagaacggcc acggcacaca
      661 tcatcgtggg gagttccaag ttccggagcc gacggcgatt tcctgtcctt tcttactacc
      721 gtaaagataa ccacgtctcc atctgccgga gcagccagcc cctgtctggc ttcagtgccc
      781 ggtgcctgga ggacgagcag atgctccagg ccatcaggaa ggccagtccg ggaagcgact
      841 tcatttacgt tgtggacact cggcctaaac ttaatgcgat ggcaaatcgt gctgcaggga
      901 aaggctatga gaacgaagac aattattcca atatcaagtt tcagtttatc gggatagaga
      961 acatccatgt catgaggaac agtctgcaaa aaatgctgga agtgtgtgaa cttaaatctc
     1021 cctccatgag tgattttctt tcgggactgg agaactctgg ctggttgagg catattaagg
     1081 ccatcatgga tgcaggaatc ttcattgcaa aggcagtttc agaggaaggg gcaagtgtgc
     1141 ttgttcattg ttccgatggc tgggacagga ctgctcaggt gtgctcggtg gccagcctcc
     1201 tgctggaccc tcactaccgg actctgaagg gcttcatggt attaattgaa aaggactgga
     1261 tttcctttgg tcataagttt aatcacagat atggcaacct agatggtgat cccaaagaaa
     1321 tctctccagt tattgaccag ttcattgagt gcgtctggca gttaatggaa caatttccct
     1381 gtgcctttga gtttaatgag aggtttttga ttcatattca acaccacatc tattcctgcc
     1441 agtttggaaa cttcctatgt aacagccaga aggagagaca agaactcaaa attcaagaaa
     1501 gaacatactc tttatgggct cacctgtgga agaatcgggg tgactacctg aaccctctat
     1561 ttagagatga tcccagtcag acccagggaa ccctccatct ccccacgaca ccatgcaact
     1621 tcaggtacaa attttggagt ggaatgtata accgctttga aaagggactg cagccccgac
     1681 agtcggtcac agattacctt atggctgtga aggaggaaac ccagcagctg gaggaagaac
     1741 tcgaggccct agaagaaagg ctggaaaaga ttcagaaagt ccagttaaat cgcactcaag
     1801 tgaagagtaa gcaaagtgaa cccagcagac actcagggtt ttctacctca gacaacagca
     1861 cagccaacac tccccaggat tacagcggga atatgaaatc atttccatcc aggagccctt
     1921 cacagggcga tgaagattct gctttgattc taacccaaga caatttgaaa agctcagacc
     1981 cagatctgtc agccaacagt gaccaagagt ctggggtgga ggatctgagc tgccgctccc
     2041 ccagcggcgg ggaatgtgtg ccgagtgagg acagcggcaa ggaccgggat tcggacgagg
     2101 ccgtgtttct cacggcctga aggtcccccg tggggggaca cacagaaaca cgttccagaa
     2161 ataagggaac agtgcaattt caaatgacaa agtagcccaa caaatgatac aggtccttga
     2221 gaattataaa atgtagcagt gaaaagaaaa aagcccaact tttagttcct tcaggtgttg
     2281 aagaacagga agtagccatt tcttttatca aacaagtata aggaaaatga ttccccattt
     2341 tgaaaatcat tctagactgt ggaagaagtt tcattcacta cagagcaatg acctctccca
     2401 tcacctgagg ttatcaatgc aaatcttcct tgatagcctg cagctggtca gaaagtgccc
     2461 tgacctcttc acacttatca cttcagtctt tccccttatt tcacttccag atgcatattc
     2521 tgtttcctga aatattttgt taccttcctt cctgactctg ttatcagtat ttctaataat
     2581 ggaacacatt atggctaata gacatatttc tgtaactgat gagctctgta actgctctta
     2641 agcttatcat tcaggtttat tgttcacttt aactttctct taggtaatat actttaaatc
     2701 gttataataa tttcgttgcc ttttcctgga atttcatatt gttccttatt taaaaaacgc
     2761 taagacttac aacacacttt tctctaacac cagtgtacca cctaataaag tagaaacaac
     2821 attta
//
LOCUS       XM_032618573            4443 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus myotubularin related protein 7 (MTMR7),
            transcript variant X2, mRNA.
ACCESSION   XM_032618573
VERSION     XM_032618573.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4443
                     /gene="MTMR7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746848"
     CDS             77..2053
                     /gene="MTMR7"
                     /codon_start=1
                     /product="myotubularin-related protein 7 isoform X2"
                     /protein_id="XP_032474464.1"
                     /db_xref="GeneID:116746848"
                     /translation="MEHIRTPKVENVRLVDRISSKKAALGTLYLTATHVIFVENAPDT
                     RKETWILHSQISTIEKQATTATGCPLLIRCKNFQLLQLIIPQERDCHDVYISLIRLAR
                     PVKYEELYCFSFNPKLDREEREQGWMLIDLSEEYKRMGLPNNYWQLSDVNRDYRVCDS
                     YPTELYVPRTATAHIIVGSSKFRSRRRFPVLSYYRKDNHVSICRSSQPLSGFSARCLE
                     DEQMLQAIRKASPGSDFIYVVDTRPKLNAMANRAAGKGYENEDNYSNIKFQFIGIENI
                     HVMRNSLQKMLEVCELKSPSMSDFLSGLENSGWLRHIKAIMDAGIFIAKAVSEEGASV
                     LVHCSDGWDRTAQVCSVASLLLDPHYRTLKGFMVLIEKDWISFGHKFNHRYGNLDGDP
                     KEISPVIDQFIECVWQLMEQFPCAFEFNERFLIHIQHHIYSCQFGNFLCNSQKERQEL
                     KIQERTYSLWAHLWKNRGDYLNPLFRDDPSQTQGTLHLPTTPCNFRFWSGMYNRFEKG
                     LQPRQSVTDYLMAVKEETQQLEEELEALEERLEKIQKVQLNRTQVKSKQSEPSRHSGF
                     STSDNSTANTPQDYSGNMKSFPSRSPSQGDEDSALILTQDNLKSSDPDLSANSDQESG
                     VEDLSCRSPSGGECVPSEDSGKDRDSDEAVFLTA"
     misc_feature    77..385
                     /gene="MTMR7"
                     /note="Myotubularian (MTM) related 7 protein (MTMR7)
                     Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase
                     activators and Myotubularins (PH-GRAM) domain; Region:
                     PH-GRAM_MTMR7; cd13344"
                     /db_xref="CDD:270152"
     misc_feature    470..1375
                     /gene="MTMR7"
                     /note="protein tyrosine phosphatase-like domain of
                     myotubularin related phosphoinositide phosphatase 7;
                     Region: PTP-MTMR7; cd14583"
                     /db_xref="CDD:350431"
     misc_feature    order(944..946,959..970,974..979,989..991,1004..1006)
                     /gene="MTMR7"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:350431"
ORIGIN      
        1 tccctcccgc cgcgctgcag acgcgcgcag gtacgtgagg cctcacccgc ccggaaccag
       61 cagaggcggg ctcgccatgg agcacatccg cacgcctaag gttgaaaatg tccgcttggt
      121 agatcgaata tcttctaaaa aggcagccct tggtactttg tatttgacgg ctactcatgt
      181 catatttgtg gaaaatgcac ctgacacaag gaaagaaaca tggattcttc acagtcagat
      241 ttccaccatc gagaaacagg cgacaacggc taccgggtgc cctctgctca ttcgctgcaa
      301 gaactttcag ctcttacagc tcatcatccc tcaggaaagg gactgccatg acgtttacat
      361 ctctctcatc cgccttgcga ggccagtgaa atatgaagag ttatactgct tttcattcaa
      421 ccccaagctg gatagagaag aaagggaaca aggctggatg ctgatcgatc tcagtgaaga
      481 gtacaagcga atgggcctcc ctaataatta ctggcagctc agcgatgtga acagagatta
      541 cagagtctgt gactcttacc ctacggagct gtacgttccc agaacggcca cggcacacat
      601 catcgtgggg agttccaagt tccggagccg acggcgattt cctgtccttt cttactaccg
      661 taaagataac cacgtctcca tctgccggag cagccagccc ctgtctggct tcagtgcccg
      721 gtgcctggag gacgagcaga tgctccaggc catcaggaag gccagtccgg gaagcgactt
      781 catttacgtt gtggacactc ggcctaaact taatgcgatg gcaaatcgtg ctgcagggaa
      841 aggctatgag aacgaagaca attattccaa tatcaagttt cagtttatcg ggatagagaa
      901 catccatgtc atgaggaaca gtctgcaaaa aatgctggaa gtgtgtgaac ttaaatctcc
      961 ctccatgagt gattttcttt cgggactgga gaactctggc tggttgaggc atattaaggc
     1021 catcatggat gcaggaatct tcattgcaaa ggcagtttca gaggaagggg caagtgtgct
     1081 tgttcattgt tccgatggct gggacaggac tgctcaggtg tgctcggtgg ccagcctcct
     1141 gctggaccct cactaccgga ctctgaaggg cttcatggta ttaattgaaa aggactggat
     1201 ttcctttggt cataagttta atcacagata tggcaaccta gatggtgatc ccaaagaaat
     1261 ctctccagtt attgaccagt tcattgagtg cgtctggcag ttaatggaac aatttccctg
     1321 tgcctttgag tttaatgaga ggtttttgat tcatattcaa caccacatct attcctgcca
     1381 gtttggaaac ttcctatgta acagccagaa ggagagacaa gaactcaaaa ttcaagaaag
     1441 aacatactct ttatgggctc acctgtggaa gaatcggggt gactacctga accctctatt
     1501 tagagatgat cccagtcaga cccagggaac cctccatctc cccacgacac catgcaactt
     1561 cagattttgg agtggaatgt ataaccgctt tgaaaaggga ctgcagcccc gacagtcggt
     1621 cacagattac cttatggctg tgaaggagga aacccagcag ctggaggaag aactcgaggc
     1681 cctagaagaa aggctggaaa agattcagaa agtccagtta aatcgcactc aagtgaagag
     1741 taagcaaagt gaacccagca gacactcagg gttttctacc tcagacaaca gcacagccaa
     1801 cactccccag gattacagcg ggaatatgaa atcatttcca tccaggagcc cttcacaggg
     1861 cgatgaagat tctgctttga ttctaaccca agacaatttg aaaagctcag acccagatct
     1921 gtcagccaac agtgaccaag agtctggggt ggaggatctg agctgccgct cccccagcgg
     1981 cggggaatgt gtgccgagtg aggacagcgg caaggaccgg gattcggacg aggccgtgtt
     2041 tctcacggcc tgaaggtccc ccgtgggggg acacacagaa acacgttcca gaaataaggg
     2101 aacagtgcaa tttcaaatga caaagtagcc caacaaatga tacaggtcct tgagaattat
     2161 aaaatgtagc agtgaaaaga aaaaagccca acttttagtt ccttcaggtg ttgaagaaca
     2221 ggaagtagcc atttctttta tcaaacaagt ataaggaaaa tgattcccca ttttgaaaat
     2281 cattctagac tgtggaagaa gtttcattca ctacagagca atgacctctc ccatcacctg
     2341 aggttatcaa tgcaaatctt ccttgatagc ctgcagctgg tcagaaagtg ccctgacctc
     2401 ttcacactta tcacttcagt ctttcccctt atttcacttc cagatgcata ttctgtttcc
     2461 tgaaatattt tgttaccttc cttcctgact ctgttatcag tatttctaat aatggaacac
     2521 attatggcta atagacatat ttctgtaact gatgagctct gtaactgctc ttaagcttat
     2581 cattcaggtt tattgttcac tttaactttc tcttaggtaa tatactttaa atcgttataa
     2641 taatttcgtt gccttttcct ggaatttcat attgttcctt atttaaaaaa cgctaagact
     2701 tacaacacac ttttctctaa caccagtgta ccacctaata aagtagaaac aacatttact
     2761 ctctggttct taaatatgaa tttggatcat attaacttct tttttaataa caacctttta
     2821 ttactactcc agaggccaca tcaccaggac agggtgggtc aaccaccagc ctgatccctg
     2881 aagtatgact gactgtataa agtcacaggg caccatttca atgagagaag atgtcacgta
     2941 agaactagag aatttggttt tcatgtctgt ttaccacgtg gagtaagttc tgtcatttgt
     3001 taccttagga accgtgtgac tggttagtat tgtttgatcg acgttctgcc tgcagagccc
     3061 acacagctgt ctcagccagc agccccgttc atcaacagag tccggtcggt tggtggtgca
     3121 gtctgaccag agaatgcaac aaggcgccgg tttgcctagc ttgggctccc gaggggacgt
     3181 gctgctggcc ctggagtcca gtctgcccac gcccaggcag aagagctgag ccatggcgcc
     3241 tctgctgtag actgtggctc ctggccccta ctgaccagaa agcctgttca ggaagatttg
     3301 ggagctgcct gaaatgggcc ttctcagtcc tcccccggcc ggagacagag agccccaccc
     3361 gatagggagg ggtggtgaga acacctggaa gctgcatacc ccagcagcgc ttgagctgag
     3421 aagcgggtgg gcagagctga ctgccctgag agcaaagcca gtggccctgt ttggccaggg
     3481 aacctggggc acaggttgac ttgagaccac gaacaaacag cgttagtgac cttcgagctg
     3541 cttctcccac ggtgcctgag cagggaaact catctgtagc cccacttatt gctgaaaaca
     3601 tgcatcagcc tgcctgacca gggagcttta ccagaacaca cgggaaactg cataacccat
     3661 ccaacagccc cgtttatagt ggcagttgaa cagagagcac agcctatgac tttccctgtc
     3721 tgcagagcaa gactggtggc ctgcaccttc agtgcacact cctgcctgat tcaggttccc
     3781 agacaatgag ctgtgcaggc cttgtgtccc atcctgctgc accaccaggg cagggaagct
     3841 aatttcatag ccccacctaa tgctgagtat agtatccagt ctcaactgtc tagtaacatc
     3901 acagaatcca agcaaccacg aagcccatcc tacagcctca cttgggtggg aggggaacca
     3961 agccagcagt cctaccaggc tatctcagcc aatgaccgtt gcctccccct cagtgctcaa
     4021 acagatgccc tgccccaaaa tagatcacct aagtacataa agcaaaaact agcagagcta
     4081 aaaggagaaa taaaagcaat aaaataatag ttggggactt taatacccca ctctagacaa
     4141 tgggtagatc atccagggag agaatcaata aggaaatagc aaattcgaac cacactatat
     4201 accaaatgta ctaacagacc tatacagaac attctgttca tcaacggcag aatacacatt
     4261 cttaaatgga catgaacatt ttctaggata caccatgtta ggccacagaa caagccagta
     4321 tattcaagaa gactgaaatc ataccaggta tcttctctga ccacaatggt atgaaactag
     4381 aaatcaataa caagaggaaa actggaaaag tcacaaacat atggaatgaa aactctcgtg
     4441 aac
//
LOCUS       XM_032618575            1290 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA polymerase beta (POLB), transcript
            variant X1, mRNA.
ACCESSION   XM_032618575
VERSION     XM_032618575.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1290
                     /gene="POLB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746849"
     CDS             124..1152
                     /gene="POLB"
                     /codon_start=1
                     /product="DNA polymerase beta isoform X1"
                     /protein_id="XP_032474466.1"
                     /db_xref="GeneID:116746849"
                     /translation="MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAAS
                     VIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKTFFFSLKIRQDDTSS
                     SINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPRE
                     EMLQMQDIVLSEVEKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLL
                     HRVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGV
                     LYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKY
                     REPKDRSE"
     misc_feature    166..1143
                     /gene="POLB"
                     /note="Nucleotidyltransferase (NT) domain of family X DNA
                     Polymerases; Region: NT_POLXc; cd00141"
                     /db_xref="CDD:143386"
     misc_feature    order(445..447,451..453,457..474,481..483,547..549,
                     589..591,679..684,691..693,697..699,703..714,718..720,
                     844..846,850..852,904..906,910..912,955..972,979..981,
                     1027..1029)
                     /gene="POLB"
                     /note="active site"
                     /db_xref="CDD:143386"
     misc_feature    order(445..447,451..453,457..474,481..483,547..549,
                     679..681,691..693,709..714,718..720,844..846,850..852,
                     904..906,910..912,955..972,979..981)
                     /gene="POLB"
                     /note="primer binding site [nucleotide binding]; other
                     site"
                     /db_xref="CDD:143386"
     misc_feature    order(589..591,679..684,691..693,697..699,703..714,
                     718..720,844..846,910..912,955..966,970..972,979..981,
                     1027..1029)
                     /gene="POLB"
                     /note="NTP binding site [chemical binding]; other site"
                     /db_xref="CDD:143386"
     misc_feature    order(712..714,718..720,910..912)
                     /gene="POLB"
                     /note="metal binding triad [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143386"
ORIGIN      
        1 cgcgctggtt tctccgcgtt gggctgatcc tgcgtcctct ccaggtcgca gcccctcccg
       61 aaagctgggc caggggacca tccctggctg tgagctctct gcggtcctcg ggtgcaggcc
      121 accatgagca aacggaaggc gccgcaggag acgctcaacg ggggcatcac cgacatgctc
      181 acagaactcg caaactttga gaagaacgtg aaccaggcta tccacaagta caatgcctac
      241 agaaaagcag catctgtgat agcaaagtat ccacacaaaa taaagagtgg agcagaagct
      301 aagaaactgc ctggagtagg aacaaaaatt gctgaaaaga ttgatgagtt tttagctact
      361 ggaaaattgc gtaaactgga aaagactttt tttttttcct taaagattcg gcaggatgat
      421 acgagttcat ccatcaattt cctgactcga gttagtggca ttggtccttc tgctgcaagg
      481 aagtttgtag atgaaggaat taagacatta gaagatctca gaaaaaatga agataaattg
      541 aaccatcatc agcgaattgg gctaaaatat tttgaggact ttgagaaaag aattcctcgt
      601 gaagagatgt tacaaatgca agatattgta ctaagtgaag ttgaaaaagt ggattctgaa
      661 tacattgcta cagtctgtgg cagtttcaga agaggggcag agtccagtgg cgacatggat
      721 gttcttctga cccatccaag ctttacctct gagtcaacca aacagccaaa gctgttacat
      781 cgtgttgtgg agcagttaca aaaggtccat tttattacag acactctgtc aaaaggggaa
      841 acaaagttca tgggtgtttg ccagcttccc agtaaaaatg atgaaaagga atatccacac
      901 aggagaattg atatcaggtt gatacccaag gatcagtatt actgtggtgt cctctatttc
      961 actgggagtg atattttcaa taagaatatg agagctcatg ccctagaaaa aggcttcaca
     1021 atcaatgaat acacaatccg tcccttggga gtcactggag ttgctggaga gccgctgccc
     1081 gtggatagtg agaaggacat ctttgactac atccagtgga aataccgaga acccaaggat
     1141 cgaagtgaat gaggcccatc ctccccggca cagcccaata ggtcttaatt tatttcttaa
     1201 cctttgctac gtaagggtct gtggtgtttt taaataattg tttcttcatg ctgtagcttg
     1261 cgttagtcaa taaaacctct tgtactatta
//
LOCUS       XM_032618576            1289 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA polymerase beta (POLB), transcript
            variant X2, mRNA.
ACCESSION   XM_032618576
VERSION     XM_032618576.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1289
                     /gene="POLB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746849"
     CDS             139..1146
                     /gene="POLB"
                     /codon_start=1
                     /product="DNA polymerase beta isoform X2"
                     /protein_id="XP_032474467.1"
                     /db_xref="GeneID:116746849"
                     /translation="MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAAS
                     VIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTR
                     VSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD
                     IVLSEVEKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHRVVEQL
                     QKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSD
                     IFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRS
                     E"
     misc_feature    181..1137
                     /gene="POLB"
                     /note="Nucleotidyltransferase (NT) domain of family X DNA
                     Polymerases; Region: NT_POLXc; cd00141"
                     /db_xref="CDD:143386"
     misc_feature    order(439..441,445..447,451..468,475..477,541..543,
                     583..585,673..678,685..687,691..693,697..708,712..714,
                     838..840,844..846,898..900,904..906,949..966,973..975,
                     1021..1023)
                     /gene="POLB"
                     /note="active site"
                     /db_xref="CDD:143386"
     misc_feature    order(439..441,445..447,451..468,475..477,541..543,
                     673..675,685..687,703..708,712..714,838..840,844..846,
                     898..900,904..906,949..966,973..975)
                     /gene="POLB"
                     /note="primer binding site [nucleotide binding]; other
                     site"
                     /db_xref="CDD:143386"
     misc_feature    order(583..585,673..678,685..687,691..693,697..708,
                     712..714,838..840,904..906,949..960,964..966,973..975,
                     1021..1023)
                     /gene="POLB"
                     /note="NTP binding site [chemical binding]; other site"
                     /db_xref="CDD:143386"
     misc_feature    order(706..708,712..714,904..906)
                     /gene="POLB"
                     /note="metal binding triad [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143386"
ORIGIN      
        1 cattgttcag ccagtcgcgc tggtttctcc gcgttgggct gatcctgcgt cctctccagg
       61 tcgcagcccc tcccgaaagc tgggccaggg gaccatccct ggctgtgagc tctctgcggt
      121 cctcgggtgc aggccaccat gagcaaacgg aaggcgccgc aggagacgct caacgggggc
      181 atcaccgaca tgctcacaga actcgcaaac tttgagaaga acgtgaacca ggctatccac
      241 aagtacaatg cctacagaaa agcagcatct gtgatagcaa agtatccaca caaaataaag
      301 agtggagcag aagctaagaa actgcctgga gtaggaacaa aaattgctga aaagattgat
      361 gagtttttag ctactggaaa attgcgtaaa ctggaaaaga ttcggcagga tgatacgagt
      421 tcatccatca atttcctgac tcgagttagt ggcattggtc cttctgctgc aaggaagttt
      481 gtagatgaag gaattaagac attagaagat ctcagaaaaa atgaagataa attgaaccat
      541 catcagcgaa ttgggctaaa atattttgag gactttgaga aaagaattcc tcgtgaagag
      601 atgttacaaa tgcaagatat tgtactaagt gaagttgaaa aagtggattc tgaatacatt
      661 gctacagtct gtggcagttt cagaagaggg gcagagtcca gtggcgacat ggatgttctt
      721 ctgacccatc caagctttac ctctgagtca accaaacagc caaagctgtt acatcgtgtt
      781 gtggagcagt tacaaaaggt ccattttatt acagacactc tgtcaaaagg ggaaacaaag
      841 ttcatgggtg tttgccagct tcccagtaaa aatgatgaaa aggaatatcc acacaggaga
      901 attgatatca ggttgatacc caaggatcag tattactgtg gtgtcctcta tttcactggg
      961 agtgatattt tcaataagaa tatgagagct catgccctag aaaaaggctt cacaatcaat
     1021 gaatacacaa tccgtccctt gggagtcact ggagttgctg gagagccgct gcccgtggat
     1081 agtgagaagg acatctttga ctacatccag tggaaatacc gagaacccaa ggatcgaagt
     1141 gaatgaggcc catcctcccc ggcacagccc aataggtctt aatttatttc ttaacctttg
     1201 ctacgtaagg gtctgtggtg tttttaaata attgtttctt catgctgtag cttgcgttag
     1261 tcaataaaac ctcttgtact attatcaga
//
LOCUS       XR_004347894            1560 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA polymerase beta (POLB), transcript
            variant X3, misc_RNA.
ACCESSION   XR_004347894
VERSION     XR_004347894.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1560
                     /gene="POLB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:116746849"
     misc_RNA        1..1560
                     /gene="POLB"
                     /product="DNA polymerase beta, transcript variant X3"
                     /db_xref="GeneID:116746849"
ORIGIN      
        1 attgttcagc cagtcgcgct ggtttctccg cgttgggctg atcctgcgtc ctctccaggt
       61 cgcagcccct cccgaaagct gggccagggg accatccctg gctgtgagct ctctgcggtc
      121 ctcgggtgca ggccaccatg agcaaacgga aggcgccgca ggagacgctc aacgggggca
      181 tcaccgacat gctcacagaa ctcgcaaact ttgagaagaa cgtgaaccag gctatccaca
      241 agtacaatgc ctacaggctt tgtgccatag tgccaattat gtggaactgc ttgtctttgc
      301 tgaaacaatt tcctccacaa attgccctca acctaccttt ccagactcat catcagtaac
      361 atgctaatac agaagtcgaa atccaaatct gaaggttata tgtgctagaa cagaatgaaa
      421 aactaaggct tcaaagacta tccaaaaact acatttagca ttgaaattat agacaggata
      481 ccatcagtga gctcccaggg tggacccaat ctgtcaccag actactgagc tagaaaagca
      541 gcatctgtga tagcaaagta tccacacaaa ataaagagtg gagcagaagc taagaaactg
      601 cctggagtag gaacaaaaat tgctgaaaag attgatgagt ttttagctac tggaaaattg
      661 cgtaaactgg aaaagattcg gcaggatgat acgagttcat ccatcaattt cctgactcga
      721 gttagtggca ttggtccttc tgctgcaagg aagtttgtag atgaaggaat taagacatta
      781 gaagatctca gaaaaaatga agataaattg aaccatcatc agcgaattgg gctaaaatat
      841 tttgaggact ttgagaaaag aattcctcgt gaagagatgt tacaaatgca agatattgta
      901 ctaagtgaag ttgaaaaagt ggattctgaa tacattgcta cagtctgtgg cagtttcaga
      961 agaggggcag agtccagtgg cgacatggat gttcttctga cccatccaag ctttacctct
     1021 gagtcaacca aacagccaaa gctgttacat cgtgttgtgg agcagttaca aaaggtccat
     1081 tttattacag acactctgtc aaaaggggaa acaaagttca tgggtgtttg ccagcttccc
     1141 agtaaaaatg atgaaaagga atatccacac aggagaattg atatcaggtt gatacccaag
     1201 gatcagtatt actgtggtgt cctctatttc actgggagtg atattttcaa taagaatatg
     1261 agagctcatg ccctagaaaa aggcttcaca atcaatgaat acacaatccg tcccttggga
     1321 gtcactggag ttgctggaga gccgctgccc gtggatagtg agaaggacat ctttgactac
     1381 atccagtgga aataccgaga acccaaggat cgaagtgaat gaggcccatc ctccccggca
     1441 cagcccaata ggtcttaatt tatttcttaa cctttgctac gtaagggtct gtggtgtttt
     1501 taaataattg tttcttcatg ctgtagcttg cgttagtcaa taaaacctct tgtactatta
//
LOCUS       XM_032618577            2225 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus indoleamine 2,3-dioxygenase 2 (IDO2),
            transcript variant X1, mRNA.
ACCESSION   XM_032618577
VERSION     XM_032618577.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2225
                     /gene="IDO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746850"
     CDS             140..1423
                     /gene="IDO2"
                     /codon_start=1
                     /product="indoleamine 2,3-dioxygenase 2 isoform X1"
                     /protein_id="XP_032474468.1"
                     /db_xref="GeneID:116746850"
                     /translation="MEPQSQDLKTAPFLTLGRFHISEDYGFLLPNPLKELPDHYRPWM
                     EIANRLPHLIGSHQLRAQVNEMPLLNCQFLTGYREQRLAHLVLTFITMGYVWQDGEAQ
                     PKEVLPRTLALPLVEVSRNLGLPPILLHSDVVLANWATRNPGRPLEIRNLDPIVLFPG
                     GESLRGFILVTVLVEKAAVPGIKALVQAVNAVLLPSPDSLLQALQQLRLSIKDITRAL
                     GQMHVVFWNLSLDSWTSTKAVLSTDYVDPDIFYAVIRIFFSGWKDNPAMPAGLLYEGV
                     SKEPLHYSGASAAQSTVLHAFDEFLGVRHSKESADFLHRMRDYMPPSHRAFIEEIHSA
                     PSLRDHILSSGNSQLLTAYNQCVEALAALRSYHLAMVTKYLITAAPKAKGRKTSHLPG
                     PPQALEERGTGGTAVVRFLKSVRDKTIEAILHQSG"
     misc_feature    185..1402
                     /gene="IDO2"
                     /note="Indoleamine 2,3-dioxygenase; Region: IDO;
                     pfam01231"
                     /db_xref="CDD:460123"
ORIGIN      
        1 cccctgttcc cgagacaact gtacagctta ctgcgaggaa gagatgctgt tttgaagctc
       61 ccttaccccg ggtctttgac gtatttggag cagttgtctc tttagcagcg gcctctgcgc
      121 agatacttca aacaaaatta tggagcctca aagtcaggat ttgaagacag caccattttt
      181 gactttagga agatttcata tttctgaaga ttatggcttt cttcttccaa atcctctgaa
      241 agaactccct gatcactata gaccttggat ggaaattgcc aaccgactgc ctcacttgat
      301 tgggagtcac cagcttcgag ctcaagtgaa cgagatgccc ctcttgaact gccagttcct
      361 cacgggttac cgggaacagc ggctggcaca cctggtccta acctttatta ccatgggata
      421 tgtctggcag gatggagagg cacagcccaa agaggttctg ccgagaaccc ttgcccttcc
      481 cttggtcgag gtctccagga acttggggct ccctcctatc ctgcttcact cggacgtggt
      541 tctggccaac tgggctacta ggaacccagg aagacccctg gaaatcagga acttggaccc
      601 cattgtctta ttcccagggg gagaaagcct gcgtggtttt atactggtga ctgttttggt
      661 ggagaaagca gctgtacccg ggattaaggc ccttgttcag gcggtgaatg ccgtcttgct
      721 gcccagccca gactccctgc tccaagccct gcagcaactg aggctctcca ttaaggacat
      781 caccagagcc ttgggacaaa tgcacgtggt gttctggaac ctttcgctgg actcctggac
      841 ttccacaaag gctgtcttat ccacggatta tgtggatcca gacatatttt acgcagtcat
      901 ccggatcttc ttctctggct ggaaggataa cccagcaatg cctgcggggt tgttgtatga
      961 aggcgtctcc aaagagcccc tgcattactc cggcgcgagc gctgcccaga gcacagtgtt
     1021 gcatgccttt gatgaattct tgggtgttcg tcacagcaag gaaagcgctg attttctgca
     1081 cagaatgagg gattacatgc ctccttccca tagggccttc atagaagaaa ttcactccgc
     1141 tccttccctg agggaccaca tcctgtcctc tggaaacagc cagcttctga cagcctataa
     1201 ccagtgcgtg gaggccctgg cagccctgcg cagctaccac ctcgccatgg tgaccaagta
     1261 cctcatcacg gccgcaccca aagcaaaggg caggaagacg agccatctcc cggggccacc
     1321 tcaggcctta gaagagaggg gcacaggcgg aacagcagtc gtgagattcc tgaagagtgt
     1381 cagggataag accatagagg ccattctcca ccaaagtggc taagagactg cccttctccc
     1441 cagcaatgca aaccacacag gtctttcctt atcctccttt cattggacag caggtgggcc
     1501 tggagaatga ggacgagggt tctgtctgga ataatctgac agggacctca gacctgttca
     1561 tgttctcgct gcacagagca ccatcttctc ctatgttgag agaattttca tggccaggaa
     1621 cttgtctttc cctccctgat cactgggtaa tagcaaacag ctctggagag cccctcattc
     1681 agaaccccac ggaggagtga gtgtacccct gttctagaaa accaacataa tttcacaaat
     1741 caaagaaaac tgcttgtgga cagatcacct tgctgatttc tcaaaaaaaa aatttttttt
     1801 ttaaattcct gcatttgttg gttcacttac tgacttatcc agcccatact gagtcctggc
     1861 ttaggggtta cagcagggat tttacagtcc tctctcccca cgtgtgcaga atttgggggc
     1921 agaagtttgg agatgctcca gtggagatgt gaagggaaga ggcagctgat gataagactc
     1981 tgaaatcacc agtgtggaaa cgagaagtta atgatatggg aacgggtggg gcttagccac
     2041 aaagttcaga aatttgtact ttctattttg gtttctttct ttcgttttag aagaatgatt
     2101 ctttctcctt acgctgaaag tttgtatttg taagatgaat gaaccctttg gaagtaaatg
     2161 agtgaaatgg gaatacatgg gaaatccaca tgtgtcgtgt gcaaataaat gtcacttttt
     2221 attga
//
LOCUS       XM_032618578            2540 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus indoleamine 2,3-dioxygenase 2 (IDO2),
            transcript variant X2, mRNA.
ACCESSION   XM_032618578
VERSION     XM_032618578.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2540
                     /gene="IDO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746850"
     CDS             503..1738
                     /gene="IDO2"
                     /codon_start=1
                     /product="indoleamine 2,3-dioxygenase 2 isoform X2"
                     /protein_id="XP_032474469.1"
                     /db_xref="GeneID:116746850"
                     /translation="MKGTLHASGDRTPLPPEKELPDHYRPWMEIANRLPHLIGSHQLR
                     AQVNEMPLLNCQFLTGYREQRLAHLVLTFITMGYVWQDGEAQPKEVLPRTLALPLVEV
                     SRNLGLPPILLHSDVVLANWATRNPGRPLEIRNLDPIVLFPGGESLRGFILVTVLVEK
                     AAVPGIKALVQAVNAVLLPSPDSLLQALQQLRLSIKDITRALGQMHVVFWNLSLDSWT
                     STKAVLSTDYVDPDIFYAVIRIFFSGWKDNPAMPAGLLYEGVSKEPLHYSGASAAQST
                     VLHAFDEFLGVRHSKESADFLHRMRDYMPPSHRAFIEEIHSAPSLRDHILSSGNSQLL
                     TAYNQCVEALAALRSYHLAMVTKYLITAAPKAKGRKTSHLPGPPQALEERGTGGTAVV
                     RFLKSVRDKTIEAILHQSG"
     misc_feature    539..1717
                     /gene="IDO2"
                     /note="Indoleamine 2,3-dioxygenase; Region: IDO;
                     pfam01231"
                     /db_xref="CDD:460123"
ORIGIN      
        1 aggatttgaa gacagcacca tttttgactt taggaagatt tcatatttct gaagattatg
       61 gctttcttct tccaaatcct ctgttttaat tttctctcac tcgtggaaga attttaaaca
      121 tctccctttc tgggaagagg aaagggaaga gagtttacac cagaatctgc ctcagtttac
      181 tcaactgatc aggagagaat ctgtcacccg tcatcggata acagtggtgt cgcaatagat
      241 cacaagttgt gaaacacgag ccgctgactt tgctaagggc atgagtagga tttgtttgcc
      301 tttgggaggt actggaaagt acactgaact ctgagtcaga agaggtttga cctgaccacc
      361 gaccagatgt gtaaactcgg gaaagttaca aaacttccct ggcttgaact tcctctattt
      421 tgaaatggaa ataatgagat aatctatcct aactcacaac acaagcgtgg atagaggaaa
      481 gatcaggaaa taaatctctc ctatgaaagg taccctccac gcatctggag ataggacacc
      541 cttaccacca gagaaagaac tccctgatca ctatagacct tggatggaaa ttgccaaccg
      601 actgcctcac ttgattggga gtcaccagct tcgagctcaa gtgaacgaga tgcccctctt
      661 gaactgccag ttcctcacgg gttaccggga acagcggctg gcacacctgg tcctaacctt
      721 tattaccatg ggatatgtct ggcaggatgg agaggcacag cccaaagagg ttctgccgag
      781 aacccttgcc cttcccttgg tcgaggtctc caggaacttg gggctccctc ctatcctgct
      841 tcactcggac gtggttctgg ccaactgggc tactaggaac ccaggaagac ccctggaaat
      901 caggaacttg gaccccattg tcttattccc agggggagaa agcctgcgtg gttttatact
      961 ggtgactgtt ttggtggaga aagcagctgt acccgggatt aaggcccttg ttcaggcggt
     1021 gaatgccgtc ttgctgccca gcccagactc cctgctccaa gccctgcagc aactgaggct
     1081 ctccattaag gacatcacca gagccttggg acaaatgcac gtggtgttct ggaacctttc
     1141 gctggactcc tggacttcca caaaggctgt cttatccacg gattatgtgg atccagacat
     1201 attttacgca gtcatccgga tcttcttctc tggctggaag gataacccag caatgcctgc
     1261 ggggttgttg tatgaaggcg tctccaaaga gcccctgcat tactccggcg cgagcgctgc
     1321 ccagagcaca gtgttgcatg cctttgatga attcttgggt gttcgtcaca gcaaggaaag
     1381 cgctgatttt ctgcacagaa tgagggatta catgcctcct tcccataggg ccttcataga
     1441 agaaattcac tccgctcctt ccctgaggga ccacatcctg tcctctggaa acagccagct
     1501 tctgacagcc tataaccagt gcgtggaggc cctggcagcc ctgcgcagct accacctcgc
     1561 catggtgacc aagtacctca tcacggccgc acccaaagca aagggcagga agacgagcca
     1621 tctcccgggg ccacctcagg ccttagaaga gaggggcaca ggcggaacag cagtcgtgag
     1681 attcctgaag agtgtcaggg ataagaccat agaggccatt ctccaccaaa gtggctaaga
     1741 gactgccctt ctccccagca atgcaaacca cacaggtctt tccttatcct cctttcattg
     1801 gacagcaggt gggcctggag aatgaggacg agggttctgt ctggaataat ctgacaggga
     1861 cctcagacct gttcatgttc tcgctgcaca gagcaccatc ttctcctatg ttgagagaat
     1921 tttcatggcc aggaacttgt ctttccctcc ctgatcactg ggtaatagca aacagctctg
     1981 gagagcccct cattcagaac cccacggagg agtgagtgta cccctgttct agaaaaccaa
     2041 cataatttca caaatcaaag aaaactgctt gtggacagat caccttgctg atttctcaaa
     2101 aaaaaaattt tttttttaaa ttcctgcatt tgttggttca cttactgact tatccagccc
     2161 atactgagtc ctggcttagg ggttacagca gggattttac agtcctctct ccccacgtgt
     2221 gcagaatttg ggggcagaag tttggagatg ctccagtgga gatgtgaagg gaagaggcag
     2281 ctgatgataa gactctgaaa tcaccagtgt ggaaacgaga agttaatgat atgggaacgg
     2341 gtggggctta gccacaaagt tcagaaattt gtactttcta ttttggtttc tttctttcgt
     2401 tttagaagaa tgattctttc tccttacgct gaaagtttgt atttgtaaga tgaatgaacc
     2461 ctttggaagt aaatgagtga aatgggaata catgggaaat ccacatgtgt cgtgtgcaaa
     2521 taaatgtcac tttttattga
//
LOCUS       XM_032618579            2313 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus indoleamine 2,3-dioxygenase 2 (IDO2),
            transcript variant X3, mRNA.
ACCESSION   XM_032618579
VERSION     XM_032618579.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2313
                     /gene="IDO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746850"
     CDS             276..1511
                     /gene="IDO2"
                     /codon_start=1
                     /product="indoleamine 2,3-dioxygenase 2 isoform X2"
                     /protein_id="XP_032474470.1"
                     /db_xref="GeneID:116746850"
                     /translation="MKGTLHASGDRTPLPPEKELPDHYRPWMEIANRLPHLIGSHQLR
                     AQVNEMPLLNCQFLTGYREQRLAHLVLTFITMGYVWQDGEAQPKEVLPRTLALPLVEV
                     SRNLGLPPILLHSDVVLANWATRNPGRPLEIRNLDPIVLFPGGESLRGFILVTVLVEK
                     AAVPGIKALVQAVNAVLLPSPDSLLQALQQLRLSIKDITRALGQMHVVFWNLSLDSWT
                     STKAVLSTDYVDPDIFYAVIRIFFSGWKDNPAMPAGLLYEGVSKEPLHYSGASAAQST
                     VLHAFDEFLGVRHSKESADFLHRMRDYMPPSHRAFIEEIHSAPSLRDHILSSGNSQLL
                     TAYNQCVEALAALRSYHLAMVTKYLITAAPKAKGRKTSHLPGPPQALEERGTGGTAVV
                     RFLKSVRDKTIEAILHQSG"
     misc_feature    312..1490
                     /gene="IDO2"
                     /note="Indoleamine 2,3-dioxygenase; Region: IDO;
                     pfam01231"
                     /db_xref="CDD:460123"
ORIGIN      
        1 ttgaagacag caccattttt gactttagga agatttcata tttctgaaga ttatggcttt
       61 cttcttccaa atcctctgga ggtactggaa agtacactga actctgagtc agaagaggtt
      121 tgacctgacc accgaccaga tgtgtaaact cgggaaagtt acaaaacttc cctggcttga
      181 acttcctcta ttttgaaatg gaaataatga gataatctat cctaactcac aacacaagcg
      241 tggatagagg aaagatcagg aaataaatct ctcctatgaa aggtaccctc cacgcatctg
      301 gagataggac acccttacca ccagagaaag aactccctga tcactataga ccttggatgg
      361 aaattgccaa ccgactgcct cacttgattg ggagtcacca gcttcgagct caagtgaacg
      421 agatgcccct cttgaactgc cagttcctca cgggttaccg ggaacagcgg ctggcacacc
      481 tggtcctaac ctttattacc atgggatatg tctggcagga tggagaggca cagcccaaag
      541 aggttctgcc gagaaccctt gcccttccct tggtcgaggt ctccaggaac ttggggctcc
      601 ctcctatcct gcttcactcg gacgtggttc tggccaactg ggctactagg aacccaggaa
      661 gacccctgga aatcaggaac ttggacccca ttgtcttatt cccaggggga gaaagcctgc
      721 gtggttttat actggtgact gttttggtgg agaaagcagc tgtacccggg attaaggccc
      781 ttgttcaggc ggtgaatgcc gtcttgctgc ccagcccaga ctccctgctc caagccctgc
      841 agcaactgag gctctccatt aaggacatca ccagagcctt gggacaaatg cacgtggtgt
      901 tctggaacct ttcgctggac tcctggactt ccacaaaggc tgtcttatcc acggattatg
      961 tggatccaga catattttac gcagtcatcc ggatcttctt ctctggctgg aaggataacc
     1021 cagcaatgcc tgcggggttg ttgtatgaag gcgtctccaa agagcccctg cattactccg
     1081 gcgcgagcgc tgcccagagc acagtgttgc atgcctttga tgaattcttg ggtgttcgtc
     1141 acagcaagga aagcgctgat tttctgcaca gaatgaggga ttacatgcct ccttcccata
     1201 gggccttcat agaagaaatt cactccgctc cttccctgag ggaccacatc ctgtcctctg
     1261 gaaacagcca gcttctgaca gcctataacc agtgcgtgga ggccctggca gccctgcgca
     1321 gctaccacct cgccatggtg accaagtacc tcatcacggc cgcacccaaa gcaaagggca
     1381 ggaagacgag ccatctcccg gggccacctc aggccttaga agagaggggc acaggcggaa
     1441 cagcagtcgt gagattcctg aagagtgtca gggataagac catagaggcc attctccacc
     1501 aaagtggcta agagactgcc cttctcccca gcaatgcaaa ccacacaggt ctttccttat
     1561 cctcctttca ttggacagca ggtgggcctg gagaatgagg acgagggttc tgtctggaat
     1621 aatctgacag ggacctcaga cctgttcatg ttctcgctgc acagagcacc atcttctcct
     1681 atgttgagag aattttcatg gccaggaact tgtctttccc tccctgatca ctgggtaata
     1741 gcaaacagct ctggagagcc cctcattcag aaccccacgg aggagtgagt gtacccctgt
     1801 tctagaaaac caacataatt tcacaaatca aagaaaactg cttgtggaca gatcaccttg
     1861 ctgatttctc aaaaaaaaaa tttttttttt aaattcctgc atttgttggt tcacttactg
     1921 acttatccag cccatactga gtcctggctt aggggttaca gcagggattt tacagtcctc
     1981 tctccccacg tgtgcagaat ttgggggcag aagtttggag atgctccagt ggagatgtga
     2041 agggaagagg cagctgatga taagactctg aaatcaccag tgtggaaacg agaagttaat
     2101 gatatgggaa cgggtggggc ttagccacaa agttcagaaa tttgtacttt ctattttggt
     2161 ttctttcttt cgttttagaa gaatgattct ttctccttac gctgaaagtt tgtatttgta
     2221 agatgaatga accctttgga agtaaatgag tgaaatggga atacatggga aatccacatg
     2281 tgtcgtgtgc aaataaatgt cactttttat tga
//
LOCUS       XM_032618580            2164 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus indoleamine 2,3-dioxygenase 2 (IDO2),
            transcript variant X4, mRNA.
ACCESSION   XM_032618580
VERSION     XM_032618580.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2164
                     /gene="IDO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746850"
     CDS             139..1362
                     /gene="IDO2"
                     /codon_start=1
                     /product="indoleamine 2,3-dioxygenase 2 isoform X3"
                     /protein_id="XP_032474471.1"
                     /db_xref="GeneID:116746850"
                     /translation="MEPQSQDLKTAPFLTLGRFHISEDYGFLLPNPLKELPDHYRPWM
                     EIANRLPHLIGSHQLRAQVNEMPLLNCQFLTGYREQRLAHLVLTFITMGYVWQDGEAQ
                     PKEVLPRTLALPLVEVSRNLGLPPILLHSDVVLANWATRNPGRPLEIRNLDPIVLFPG
                     GESLRGFILVTVLVEKAAVPGIKALVQAVNAVLLPSPDSLLQALQQLRLSIKDITRAL
                     GQMHDYVDPDIFYAVIRIFFSGWKDNPAMPAGLLYEGVSKEPLHYSGASAAQSTVLHA
                     FDEFLGVRHSKESADFLHRMRDYMPPSHRAFIEEIHSAPSLRDHILSSGNSQLLTAYN
                     QCVEALAALRSYHLAMVTKYLITAAPKAKGRKTSHLPGPPQALEERGTGGTAVVRFLK
                     SVRDKTIEAILHQSG"
     misc_feature    184..1341
                     /gene="IDO2"
                     /note="Indoleamine 2,3-dioxygenase; Region: IDO;
                     pfam01231"
                     /db_xref="CDD:460123"
ORIGIN      
        1 ccctgttccc gagacaactg tacagcttac tgcgaggaag agatgctgtt ttgaagctcc
       61 cttaccccgg gtctttgacg tatttggagc agttgtctct ttagcagcgg cctctgcgca
      121 gatacttcaa acaaaattat ggagcctcaa agtcaggatt tgaagacagc accatttttg
      181 actttaggaa gatttcatat ttctgaagat tatggctttc ttcttccaaa tcctctgaaa
      241 gaactccctg atcactatag accttggatg gaaattgcca accgactgcc tcacttgatt
      301 gggagtcacc agcttcgagc tcaagtgaac gagatgcccc tcttgaactg ccagttcctc
      361 acgggttacc gggaacagcg gctggcacac ctggtcctaa cctttattac catgggatat
      421 gtctggcagg atggagaggc acagcccaaa gaggttctgc cgagaaccct tgcccttccc
      481 ttggtcgagg tctccaggaa cttggggctc cctcctatcc tgcttcactc ggacgtggtt
      541 ctggccaact gggctactag gaacccagga agacccctgg aaatcaggaa cttggacccc
      601 attgtcttat tcccaggggg agaaagcctg cgtggtttta tactggtgac tgttttggtg
      661 gagaaagcag ctgtacccgg gattaaggcc cttgttcagg cggtgaatgc cgtcttgctg
      721 cccagcccag actccctgct ccaagccctg cagcaactga ggctctccat taaggacatc
      781 accagagcct tgggacaaat gcacgattat gtggatccag acatatttta cgcagtcatc
      841 cggatcttct tctctggctg gaaggataac ccagcaatgc ctgcggggtt gttgtatgaa
      901 ggcgtctcca aagagcccct gcattactcc ggcgcgagcg ctgcccagag cacagtgttg
      961 catgcctttg atgaattctt gggtgttcgt cacagcaagg aaagcgctga ttttctgcac
     1021 agaatgaggg attacatgcc tccttcccat agggccttca tagaagaaat tcactccgct
     1081 ccttccctga gggaccacat cctgtcctct ggaaacagcc agcttctgac agcctataac
     1141 cagtgcgtgg aggccctggc agccctgcgc agctaccacc tcgccatggt gaccaagtac
     1201 ctcatcacgg ccgcacccaa agcaaagggc aggaagacga gccatctccc ggggccacct
     1261 caggccttag aagagagggg cacaggcgga acagcagtcg tgagattcct gaagagtgtc
     1321 agggataaga ccatagaggc cattctccac caaagtggct aagagactgc ccttctcccc
     1381 agcaatgcaa accacacagg tctttcctta tcctcctttc attggacagc aggtgggcct
     1441 ggagaatgag gacgagggtt ctgtctggaa taatctgaca gggacctcag acctgttcat
     1501 gttctcgctg cacagagcac catcttctcc tatgttgaga gaattttcat ggccaggaac
     1561 ttgtctttcc ctccctgatc actgggtaat agcaaacagc tctggagagc ccctcattca
     1621 gaaccccacg gaggagtgag tgtacccctg ttctagaaaa ccaacataat ttcacaaatc
     1681 aaagaaaact gcttgtggac agatcacctt gctgatttct caaaaaaaaa attttttttt
     1741 taaattcctg catttgttgg ttcacttact gacttatcca gcccatactg agtcctggct
     1801 taggggttac agcagggatt ttacagtcct ctctccccac gtgtgcagaa tttgggggca
     1861 gaagtttgga gatgctccag tggagatgtg aagggaagag gcagctgatg ataagactct
     1921 gaaatcacca gtgtggaaac gagaagttaa tgatatggga acgggtgggg cttagccaca
     1981 aagttcagaa atttgtactt tctattttgg tttctttctt tcgttttaga agaatgattc
     2041 tttctcctta cgctgaaagt ttgtatttgt aagatgaatg aaccctttgg aagtaaatga
     2101 gtgaaatggg aatacatggg aaatccacat gtgtcgtgtg caaataaatg tcacttttta
     2161 ttga
//
LOCUS       XM_032618581            2105 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus indoleamine 2,3-dioxygenase 2 (IDO2),
            transcript variant X5, mRNA.
ACCESSION   XM_032618581
VERSION     XM_032618581.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2105
                     /gene="IDO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746850"
     CDS             140..1303
                     /gene="IDO2"
                     /codon_start=1
                     /product="indoleamine 2,3-dioxygenase 2 isoform X4"
                     /protein_id="XP_032474472.1"
                     /db_xref="GeneID:116746850"
                     /translation="MEPQSQDLKTAPFLTLGRFHISEDYGFLLPNPLKELPDHYRPWM
                     EIANRLPHLIGSHQLRAQVNEVLPRTLALPLVEVSRNLGLPPILLHSDVVLANWATRN
                     PGRPLEIRNLDPIVLFPGGESLRGFILVTVLVEKAAVPGIKALVQAVNAVLLPSPDSL
                     LQALQQLRLSIKDITRALGQMHVVFWNLSLDSWTSTKAVLSTDYVDPDIFYAVIRIFF
                     SGWKDNPAMPAGLLYEGVSKEPLHYSGASAAQSTVLHAFDEFLGVRHSKESADFLHRM
                     RDYMPPSHRAFIEEIHSAPSLRDHILSSGNSQLLTAYNQCVEALAALRSYHLAMVTKY
                     LITAAPKAKGRKTSHLPGPPQALEERGTGGTAVVRFLKSVRDKTIEAILHQSG"
     misc_feature    185..1282
                     /gene="IDO2"
                     /note="Indoleamine 2,3-dioxygenase; Region: IDO;
                     pfam01231"
                     /db_xref="CDD:460123"
ORIGIN      
        1 cccctgttcc cgagacaact gtacagctta ctgcgaggaa gagatgctgt tttgaagctc
       61 ccttaccccg ggtctttgac gtatttggag cagttgtctc tttagcagcg gcctctgcgc
      121 agatacttca aacaaaatta tggagcctca aagtcaggat ttgaagacag caccattttt
      181 gactttagga agatttcata tttctgaaga ttatggcttt cttcttccaa atcctctgaa
      241 agaactccct gatcactata gaccttggat ggaaattgcc aaccgactgc ctcacttgat
      301 tgggagtcac cagcttcgag ctcaagtgaa cgaggttctg ccgagaaccc ttgcccttcc
      361 cttggtcgag gtctccagga acttggggct ccctcctatc ctgcttcact cggacgtggt
      421 tctggccaac tgggctacta ggaacccagg aagacccctg gaaatcagga acttggaccc
      481 cattgtctta ttcccagggg gagaaagcct gcgtggtttt atactggtga ctgttttggt
      541 ggagaaagca gctgtacccg ggattaaggc ccttgttcag gcggtgaatg ccgtcttgct
      601 gcccagccca gactccctgc tccaagccct gcagcaactg aggctctcca ttaaggacat
      661 caccagagcc ttgggacaaa tgcacgtggt gttctggaac ctttcgctgg actcctggac
      721 ttccacaaag gctgtcttat ccacggatta tgtggatcca gacatatttt acgcagtcat
      781 ccggatcttc ttctctggct ggaaggataa cccagcaatg cctgcggggt tgttgtatga
      841 aggcgtctcc aaagagcccc tgcattactc cggcgcgagc gctgcccaga gcacagtgtt
      901 gcatgccttt gatgaattct tgggtgttcg tcacagcaag gaaagcgctg attttctgca
      961 cagaatgagg gattacatgc ctccttccca tagggccttc atagaagaaa ttcactccgc
     1021 tccttccctg agggaccaca tcctgtcctc tggaaacagc cagcttctga cagcctataa
     1081 ccagtgcgtg gaggccctgg cagccctgcg cagctaccac ctcgccatgg tgaccaagta
     1141 cctcatcacg gccgcaccca aagcaaaggg caggaagacg agccatctcc cggggccacc
     1201 tcaggcctta gaagagaggg gcacaggcgg aacagcagtc gtgagattcc tgaagagtgt
     1261 cagggataag accatagagg ccattctcca ccaaagtggc taagagactg cccttctccc
     1321 cagcaatgca aaccacacag gtctttcctt atcctccttt cattggacag caggtgggcc
     1381 tggagaatga ggacgagggt tctgtctgga ataatctgac agggacctca gacctgttca
     1441 tgttctcgct gcacagagca ccatcttctc ctatgttgag agaattttca tggccaggaa
     1501 cttgtctttc cctccctgat cactgggtaa tagcaaacag ctctggagag cccctcattc
     1561 agaaccccac ggaggagtga gtgtacccct gttctagaaa accaacataa tttcacaaat
     1621 caaagaaaac tgcttgtgga cagatcacct tgctgatttc tcaaaaaaaa aatttttttt
     1681 ttaaattcct gcatttgttg gttcacttac tgacttatcc agcccatact gagtcctggc
     1741 ttaggggtta cagcagggat tttacagtcc tctctcccca cgtgtgcaga atttgggggc
     1801 agaagtttgg agatgctcca gtggagatgt gaagggaaga ggcagctgat gataagactc
     1861 tgaaatcacc agtgtggaaa cgagaagtta atgatatggg aacgggtggg gcttagccac
     1921 aaagttcaga aatttgtact ttctattttg gtttctttct ttcgttttag aagaatgatt
     1981 ctttctcctt acgctgaaag tttgtatttg taagatgaat gaaccctttg gaagtaaatg
     2041 agtgaaatgg gaatacatgg gaaatccaca tgtgtcgtgt gcaaataaat gtcacttttt
     2101 attga
//
LOCUS       XM_032618582            2470 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus indoleamine 2,3-dioxygenase 2 (IDO2),
            transcript variant X6, mRNA.
ACCESSION   XM_032618582
VERSION     XM_032618582.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2470
                     /gene="IDO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746850"
     CDS             514..1668
                     /gene="IDO2"
                     /codon_start=1
                     /product="indoleamine 2,3-dioxygenase 2 isoform X5"
                     /protein_id="XP_032474473.1"
                     /db_xref="GeneID:116746850"
                     /translation="MEIANRLPHLIGSHQLRAQVNEMPLLNCQFLTGYREQRLAHLVL
                     TFITMGYVWQDGEAQPKEVLPRTLALPLVEVSRNLGLPPILLHSDVVLANWATRNPGR
                     PLEIRNLDPIVLFPGGESLRGFILVTVLVEKAAVPGIKALVQAVNAVLLPSPDSLLQA
                     LQQLRLSIKDITRALGQMHVVFWNLSLDSWTSTKAVLSTDYVDPDIFYAVIRIFFSGW
                     KDNPAMPAGLLYEGVSKEPLHYSGASAAQSTVLHAFDEFLGVRHSKESADFLHRMRDY
                     MPPSHRAFIEEIHSAPSLRDHILSSGNSQLLTAYNQCVEALAALRSYHLAMVTKYLIT
                     AAPKAKGRKTSHLPGPPQALEERGTGGTAVVRFLKSVRDKTIEAILHQSG"
     misc_feature    514..1647
                     /gene="IDO2"
                     /note="Indoleamine 2,3-dioxygenase; Region: IDO;
                     pfam01231"
                     /db_xref="CDD:460123"
ORIGIN      
        1 aggatttgaa gacagcacca tttttgactt taggaagatt tcatatttct gaagattatg
       61 gctttcttct tccaaatcct ctgttttaat tttctctcac tcgtggaaga attttaaaca
      121 tctccctttc tgggaagagg aaagggaaga gagtttacac cagaatctgc ctcagtttac
      181 tcaactgatc aggagagaat ctgtcacccg tcatcggata acagtggtgt cgcaatagat
      241 cacaagttgt gaaacacgag ccgctgactt tgctaagggc atgagtagga tttgtttgcc
      301 tttgggaggt actggaaagt acactgaact ctgagtcaga agaggtttga cctgaccacc
      361 gaccagatgt gtaaactcgg gaaagttaca aaacttccct ggcttgaact tcctctattt
      421 tgaaatggaa ataatgagat aatctatcct aactcacaac acaagcgtgg atagaggaaa
      481 gataaagaac tccctgatca ctatagacct tggatggaaa ttgccaaccg actgcctcac
      541 ttgattggga gtcaccagct tcgagctcaa gtgaacgaga tgcccctctt gaactgccag
      601 ttcctcacgg gttaccggga acagcggctg gcacacctgg tcctaacctt tattaccatg
      661 ggatatgtct ggcaggatgg agaggcacag cccaaagagg ttctgccgag aacccttgcc
      721 cttcccttgg tcgaggtctc caggaacttg gggctccctc ctatcctgct tcactcggac
      781 gtggttctgg ccaactgggc tactaggaac ccaggaagac ccctggaaat caggaacttg
      841 gaccccattg tcttattccc agggggagaa agcctgcgtg gttttatact ggtgactgtt
      901 ttggtggaga aagcagctgt acccgggatt aaggcccttg ttcaggcggt gaatgccgtc
      961 ttgctgccca gcccagactc cctgctccaa gccctgcagc aactgaggct ctccattaag
     1021 gacatcacca gagccttggg acaaatgcac gtggtgttct ggaacctttc gctggactcc
     1081 tggacttcca caaaggctgt cttatccacg gattatgtgg atccagacat attttacgca
     1141 gtcatccgga tcttcttctc tggctggaag gataacccag caatgcctgc ggggttgttg
     1201 tatgaaggcg tctccaaaga gcccctgcat tactccggcg cgagcgctgc ccagagcaca
     1261 gtgttgcatg cctttgatga attcttgggt gttcgtcaca gcaaggaaag cgctgatttt
     1321 ctgcacagaa tgagggatta catgcctcct tcccataggg ccttcataga agaaattcac
     1381 tccgctcctt ccctgaggga ccacatcctg tcctctggaa acagccagct tctgacagcc
     1441 tataaccagt gcgtggaggc cctggcagcc ctgcgcagct accacctcgc catggtgacc
     1501 aagtacctca tcacggccgc acccaaagca aagggcagga agacgagcca tctcccgggg
     1561 ccacctcagg ccttagaaga gaggggcaca ggcggaacag cagtcgtgag attcctgaag
     1621 agtgtcaggg ataagaccat agaggccatt ctccaccaaa gtggctaaga gactgccctt
     1681 ctccccagca atgcaaacca cacaggtctt tccttatcct cctttcattg gacagcaggt
     1741 gggcctggag aatgaggacg agggttctgt ctggaataat ctgacaggga cctcagacct
     1801 gttcatgttc tcgctgcaca gagcaccatc ttctcctatg ttgagagaat tttcatggcc
     1861 aggaacttgt ctttccctcc ctgatcactg ggtaatagca aacagctctg gagagcccct
     1921 cattcagaac cccacggagg agtgagtgta cccctgttct agaaaaccaa cataatttca
     1981 caaatcaaag aaaactgctt gtggacagat caccttgctg atttctcaaa aaaaaaattt
     2041 tttttttaaa ttcctgcatt tgttggttca cttactgact tatccagccc atactgagtc
     2101 ctggcttagg ggttacagca gggattttac agtcctctct ccccacgtgt gcagaatttg
     2161 ggggcagaag tttggagatg ctccagtgga gatgtgaagg gaagaggcag ctgatgataa
     2221 gactctgaaa tcaccagtgt ggaaacgaga agttaatgat atgggaacgg gtggggctta
     2281 gccacaaagt tcagaaattt gtactttcta ttttggtttc tttctttcgt tttagaagaa
     2341 tgattctttc tccttacgct gaaagtttgt atttgtaaga tgaatgaacc ctttggaagt
     2401 aaatgagtga aatgggaata catgggaaat ccacatgtgt cgtgtgcaaa taaatgtcac
     2461 tttttattga
//
LOCUS       XM_032618583            2292 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus indoleamine 2,3-dioxygenase 2 (IDO2),
            transcript variant X7, mRNA.
ACCESSION   XM_032618583
VERSION     XM_032618583.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2292
                     /gene="IDO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746850"
     CDS             336..1490
                     /gene="IDO2"
                     /codon_start=1
                     /product="indoleamine 2,3-dioxygenase 2 isoform X5"
                     /protein_id="XP_032474474.1"
                     /db_xref="GeneID:116746850"
                     /translation="MEIANRLPHLIGSHQLRAQVNEMPLLNCQFLTGYREQRLAHLVL
                     TFITMGYVWQDGEAQPKEVLPRTLALPLVEVSRNLGLPPILLHSDVVLANWATRNPGR
                     PLEIRNLDPIVLFPGGESLRGFILVTVLVEKAAVPGIKALVQAVNAVLLPSPDSLLQA
                     LQQLRLSIKDITRALGQMHVVFWNLSLDSWTSTKAVLSTDYVDPDIFYAVIRIFFSGW
                     KDNPAMPAGLLYEGVSKEPLHYSGASAAQSTVLHAFDEFLGVRHSKESADFLHRMRDY
                     MPPSHRAFIEEIHSAPSLRDHILSSGNSQLLTAYNQCVEALAALRSYHLAMVTKYLIT
                     AAPKAKGRKTSHLPGPPQALEERGTGGTAVVRFLKSVRDKTIEAILHQSG"
     misc_feature    336..1469
                     /gene="IDO2"
                     /note="Indoleamine 2,3-dioxygenase; Region: IDO;
                     pfam01231"
                     /db_xref="CDD:460123"
ORIGIN      
        1 aggatttgaa gacagcacca tttttgactt taggaagatt tcatatttct gaagattatg
       61 gctttcttct tccaaatcct ctgttttaat tttctctcac tcgtggaaga attttaaaca
      121 tctccctttc tgggaagagg aaagggaaga gagtttacac cagaatctgc ctcagtttac
      181 tcaactgatc aggagagaat ctgtcacccg tcatcggata acagtggtgt cgcaatagat
      241 cacaagttgt gaaacacgag ccgctgactt tgctaagggc atgagtagga tttgtttgcc
      301 tttggaaaga actccctgat cactatagac cttggatgga aattgccaac cgactgcctc
      361 acttgattgg gagtcaccag cttcgagctc aagtgaacga gatgcccctc ttgaactgcc
      421 agttcctcac gggttaccgg gaacagcggc tggcacacct ggtcctaacc tttattacca
      481 tgggatatgt ctggcaggat ggagaggcac agcccaaaga ggttctgccg agaacccttg
      541 cccttccctt ggtcgaggtc tccaggaact tggggctccc tcctatcctg cttcactcgg
      601 acgtggttct ggccaactgg gctactagga acccaggaag acccctggaa atcaggaact
      661 tggaccccat tgtcttattc ccagggggag aaagcctgcg tggttttata ctggtgactg
      721 ttttggtgga gaaagcagct gtacccggga ttaaggccct tgttcaggcg gtgaatgccg
      781 tcttgctgcc cagcccagac tccctgctcc aagccctgca gcaactgagg ctctccatta
      841 aggacatcac cagagccttg ggacaaatgc acgtggtgtt ctggaacctt tcgctggact
      901 cctggacttc cacaaaggct gtcttatcca cggattatgt ggatccagac atattttacg
      961 cagtcatccg gatcttcttc tctggctgga aggataaccc agcaatgcct gcggggttgt
     1021 tgtatgaagg cgtctccaaa gagcccctgc attactccgg cgcgagcgct gcccagagca
     1081 cagtgttgca tgcctttgat gaattcttgg gtgttcgtca cagcaaggaa agcgctgatt
     1141 ttctgcacag aatgagggat tacatgcctc cttcccatag ggccttcata gaagaaattc
     1201 actccgctcc ttccctgagg gaccacatcc tgtcctctgg aaacagccag cttctgacag
     1261 cctataacca gtgcgtggag gccctggcag ccctgcgcag ctaccacctc gccatggtga
     1321 ccaagtacct catcacggcc gcacccaaag caaagggcag gaagacgagc catctcccgg
     1381 ggccacctca ggccttagaa gagaggggca caggcggaac agcagtcgtg agattcctga
     1441 agagtgtcag ggataagacc atagaggcca ttctccacca aagtggctaa gagactgccc
     1501 ttctccccag caatgcaaac cacacaggtc tttccttatc ctcctttcat tggacagcag
     1561 gtgggcctgg agaatgagga cgagggttct gtctggaata atctgacagg gacctcagac
     1621 ctgttcatgt tctcgctgca cagagcacca tcttctccta tgttgagaga attttcatgg
     1681 ccaggaactt gtctttccct ccctgatcac tgggtaatag caaacagctc tggagagccc
     1741 ctcattcaga accccacgga ggagtgagtg tacccctgtt ctagaaaacc aacataattt
     1801 cacaaatcaa agaaaactgc ttgtggacag atcaccttgc tgatttctca aaaaaaaaat
     1861 ttttttttta aattcctgca tttgttggtt cacttactga cttatccagc ccatactgag
     1921 tcctggctta ggggttacag cagggatttt acagtcctct ctccccacgt gtgcagaatt
     1981 tgggggcaga agtttggaga tgctccagtg gagatgtgaa gggaagaggc agctgatgat
     2041 aagactctga aatcaccagt gtggaaacga gaagttaatg atatgggaac gggtggggct
     2101 tagccacaaa gttcagaaat ttgtactttc tattttggtt tctttctttc gttttagaag
     2161 aatgattctt tctccttacg ctgaaagttt gtatttgtaa gatgaatgaa ccctttggaa
     2221 gtaaatgagt gaaatgggaa tacatgggaa atccacatgt gtcgtgtgca aataaatgtc
     2281 actttttatt ga
//
LOCUS       XM_032618585             663 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus putative claudin-24 (LOC116746852), mRNA.
ACCESSION   XM_032618585
VERSION     XM_032618585.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..663
                     /gene="LOC116746852"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 8 Proteins"
                     /db_xref="GeneID:116746852"
     CDS             1..663
                     /gene="LOC116746852"
                     /codon_start=1
                     /product="putative claudin-24"
                     /protein_id="XP_032474476.1"
                     /db_xref="GeneID:116746852"
                     /translation="MALVFRVAMQFVGILLSLLGWVLSIITTFLPHWKNLNLDLNEME
                     NWTVGLWQTCVTQEEVGMQCKDFDSFLALPAELRISRILMFLSNGLGFLGLLVSGFGL
                     DCLRIGERQQDVKKQLLILGGILFWTAGVAALVPVSWVAHRTVQEFWDETIPEIVPRW
                     EFGAALFIGWFAGFSLLLGGCLLNWAACGTQIPLASGHYAVAEMQTQCSYLENGTANP
                     SV"
     misc_feature    28..549
                     /gene="LOC116746852"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      
        1 atggctttag tctttagagt agcaatgcaa ttcgttggaa ttttgctatc tctgctggga
       61 tgggttttat ccattattac aacttttctg ccacattgga aaaacctcaa cctggactta
      121 aatgaaatgg aaaactggac cgtgggactc tggcagacct gcgtcaccca agaggaagtg
      181 ggcatgcaat gcaaggactt tgattctttc ctggctttgc ccgctgagct caggatctcc
      241 aggattttaa tgttcctctc aaacggcctg ggattcctgg gcctgctggt ctcggggttt
      301 ggcctggact gcttgagaat tggagagaga cagcaggatg tcaagaagca gctgttaatc
      361 ctgggaggaa ttctgttctg gacagcaggt gtcgcagccc ttgttcctgt ctcttgggtc
      421 gcccacagga cagtccagga gttctgggat gagaccatcc ccgagattgt gcccaggtgg
      481 gagtttgggg cggccctctt tatcggctgg tttgctggat tttctctcct gctcggaggg
      541 tgtctgctaa actgggccgc ctgcgggacc cagattcccc tggcttccgg ccactatgca
      601 gtggcagaaa tgcaaactca gtgttcatac ctggaaaatg gaactgccaa tccttcagtg
      661 taa
//
LOCUS       XM_032618586            3637 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CDKN2A interacting protein (CDKN2AIP),
            transcript variant X1, mRNA.
ACCESSION   XM_032618586
VERSION     XM_032618586.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3637
                     /gene="CDKN2AIP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746853"
     CDS             1110..2858
                     /gene="CDKN2AIP"
                     /codon_start=1
                     /product="CDKN2A-interacting protein isoform X1"
                     /protein_id="XP_032474477.1"
                     /db_xref="GeneID:116746853"
                     /translation="MAQEVSEYLSQNPRVAAWVETLRSDGETDKHWRHRREFLLRNAG
                     DLAPAGGAASAHPEEAADAESGTRSRQLQQLISFSMAWANHVFLGCRYPQKVMDKILS
                     MAEGIKVTDAPIHTTRDELVAKVKKRGISSSNEGVEEPTKKRAIEGKNSSAVEQKDHV
                     KIPAKTERASAQQESSSACSGSTTKSESSGNSARSSGTLSQNSSTSDGERSVSSQSSS
                     IPSQVTAVGCGKASEPEAPDKHGSASLVSSLLKSSVNSHVTQSADSRQQSGSPKKSAL
                     EGSSVSASQSISEIEVPLLGSSGSSEIELPLLSSKPSSETASSGLTSKASSEASVSSS
                     VSKNSSSSGTSLLTPKSTTSANTMLTSKSTSQVAASLLAPKSSSRTSGALVSKSTSIA
                     SVSQLASKSSSQSSTSQLPSESTAQASESSVRFSCCKLTNEDVKQKQPFFNRLYKTVA
                     WKLVAVGGFSPSVNHGELLNAAVEALKATLDVVFVPLKELADLPQNKSSQESIVCELR
                     CKSVYLGTGCGKSKENAKAVASREALKLFLKKKVVVKICKRKYRGSEIEDLVLLDEES
                     RPVNLPPALKHPQELL"
     misc_feature    1164..1481
                     /gene="CDKN2AIP"
                     /note="XRN-Two Binding Domain, XTBD; Region: XTBD;
                     pfam11952"
                     /db_xref="CDD:463409"
ORIGIN      
        1 cataacaata ggcaagccag cagctatgct ttaagtctgg acattctaaa atggaaaaaa
       61 tgcaaagaaa aatgtagctc taagaggtga agtttagggg cgtggagaca aatacacttt
      121 tccaagccgc ctcctgggta tccgtccagc taggggttac agtatgttaa tttaaggaaa
      181 tacgacggat accgaaggta ctggcgcagc gtttatgtta ctgaccaaat atccacccta
      241 gaggaagcag tactgcccgg gttgaaccgc ggaaaccaaa cccaagtctg cggggtcagg
      301 agtagtttca aagactgggc tccacaaggc aacatcgaac tggattaaac gttatcattt
      361 acctttatta ttagtataat acttataagc taatatacac ctgcacattc ctaaatgccc
      421 cgagactgga cggcctcaga atgcctcgct tgtctacatt cgattttctg cataatcaga
      481 aaaaatggag gcgagctttg tttactttgg ccccgctcga aaccagcgtc ctcgggccga
      541 ggcgcccaga cctcgcggcc ggatggcgac tcgagtccgc gggaacgcgc gcggcacgcg
      601 aggactcggc ctgccccacc cggctgcccc ggagcccgct gtcctccgcc gacccccgga
      661 gcagcgggcc cggggcggga gcgcgtggcg tcacaaagcc cagtcggaac gctggggccg
      721 tcgccgaagc cgagggcgcc cggggcgaac acactagcgg ccctccctag cagaacggca
      781 ggcgcgcgaa ccctttatct cgccccgcct cccctacccc cgccgcaggg gccgcagcgc
      841 cgcggcttgg gcgccgcaaa gcgtcctggg agagccggct cgcgccggaa ggacgcgcgg
      901 gcgctcggcg gcagcaaggt tataaaaggg aaggagccgg cggcgggcgg aagtgggcgg
      961 ttcagctgct cgcggcgctg ttgtttcgtg tttgcgcttc ttgaggggcg ttctgtggtg
     1021 ggccgctggt gcaggccgca gtgacagggc cgctcgcccc gcagccccca gcctcggcgc
     1081 agcgtccgat cgcgacccgc aggcccaaca tggcgcagga ggtgtcggag tacctgagcc
     1141 agaacccgcg ggtggccgcc tgggtggaga cgctgcgctc cgacggcgag accgacaaac
     1201 actggcgcca ccgccgcgag ttcctgctcc gcaacgccgg ggacctggcc cccgccggcg
     1261 gcgctgcctc cgctcacccg gaggaggccg ccgacgccga gagcgggacc cgcagtcggc
     1321 agctgcagca gctcatctcc ttttccatgg cctgggccaa ccacgtcttc ctcgggtgcc
     1381 ggtaccctca aaaagttatg gataaaatac ttagtatggc tgaaggcatc aaagtgacag
     1441 atgctccaat ccatacaaca agagacgaac tggttgccaa ggtgaagaaa agagggatat
     1501 cgagtagcaa tgaaggggta gaagagccaa caaaaaaacg agccatagaa ggaaaaaaca
     1561 gttctgcagt tgagcaaaaa gatcatgtga aaattcctgc caaaacagag cgtgcatcag
     1621 ctcagcagga aagtagttca gcgtgttcgg gatcaactac caagtcagag agtagtggga
     1681 actcagctcg gagctctggc accctgagtc agaacagctc cacaagtgat ggagagcgct
     1741 ctgtttccag ccaaagcagc agcattccct ctcaggtaac agcagtaggg tgtggaaaag
     1801 cttctgaacc agaagctcca gataaacatg gttcagcgtc gttggtttct tcgttgttga
     1861 aatccagtgt gaatagtcat gtgacccagt ccgctgattc cagacaacaa agtggatccc
     1921 cgaaaaagag tgctttggaa ggctcttcag tctcggcctc tcagagcatc tcagagattg
     1981 aggtgccctt gctgggctcc tcaggaagct cagaaataga gttgccactg ttgtcttcta
     2041 aacctagttc agagacagct tcaagcgggt taacttccaa agctagttca gaggcaagtg
     2101 tttcatcatc agtttctaaa aacagttcct catcaggcac atctttacta acccccaaga
     2161 gcaccacctc agcaaacacg atgctgactt ccaaaagcac ttcgcaggta gctgcatcac
     2221 tgttagctcc caagagcagc tcccggacca gcggcgctct ggtttccaaa agcacttcca
     2281 tagcaagtgt gtcccagctg gcttctaaga gcagctctca gagcagcacg tcacagctgc
     2341 cttctgaaag tactgcgcag gcgagcgaga gttctgtcag attctcttgt tgcaagttaa
     2401 ccaatgaaga tgtgaaacag aagcagcctt ttttcaatag actgtacaaa acggtggcat
     2461 ggaagttggt ggccgttggt ggctttagtc ccagcgtgaa tcacggagag ctcctaaacg
     2521 cagctgtcga ggctctgaaa gcaacgctgg atgtggtttt cgtcccgcta aaggaactgg
     2581 cagatctgcc tcaaaacaag agctctcaag aaagtattgt ttgtgaactg agatgtaagt
     2641 ctgtgtattt gggcactggc tgtggaaaaa gcaaagaaaa cgcaaaagca gttgcatcaa
     2701 gagaagcctt gaagttattt ctcaagaaaa aggtggtggt aaaaatatgt aaaaggaaat
     2761 acagaggcag tgaaatcgaa gacttagtac tcctcgatga agagtcaagg cctgtaaact
     2821 tgcctccagc attaaaacat cctcaagaat tactgtaata atgtccaaaa tgtcactgtg
     2881 tacaatatct ggtatttgaa gagaagaact ggcttacttt tgtataatat gaaacacaga
     2941 ctttcacaaa ttttgtattg cttttttcca gttttgcaga aaatttacat tctagttctc
     3001 ttcacacagt ggaagttgta aataatttgt gaacgacagt atacagtaaa aggtttatgc
     3061 attagcagca taccagtatg ctgttttatt tgctgaaaaa aatactgtct tctattttta
     3121 atgacacatt aggtacgatg tgtagttctg tagtcttaaa atttttgtac tactttgaat
     3181 ttggtgaaaa tgtattaagt tgtctaccat gctttttttt ttttctagct gaataaacct
     3241 tcacatcaaa gaaaagggga ccatagtatt tgtctgaaag tctgtgaagc ttaaggtttt
     3301 aagaatgttg cctataatgt tgaaccatgt ctgttaaaga ataaaagaga aaatagttgc
     3361 ctcagactat ttttatgaga agctgtaagc attttttaga tataaagcag tgttaaatac
     3421 ttaaggttat tttattctga agttgtttga aattcaccat gattttgacc tctgcagatt
     3481 ctttaagtgg gttaatttat gttttgaggt aaagtacaat ttacactttt tcttaaagac
     3541 gtaaatgtgg gtttctatat taagcatatt ttgtgactac tactattaac agattgattt
     3601 gtttagatat taaatgcttt aagctatttt acctttt
//
LOCUS       XM_032618587            3949 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CDKN2A interacting protein (CDKN2AIP),
            transcript variant X2, mRNA.
ACCESSION   XM_032618587
VERSION     XM_032618587.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3949
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3949
                     /gene="CDKN2AIP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746853"
     CDS             1453..1833
                     /gene="CDKN2AIP"
                     /codon_start=1
                     /product="CDKN2A-interacting protein isoform X2"
                     /protein_id="XP_032474478.1"
                     /db_xref="GeneID:116746853"
                     /translation="MAQEVSEYLSQNPRVAAWVETLRSDGETDKHWRHRREFLLRNAG
                     DLAPAGGAASAHPEEAADAESGTRSRQLQQLISFSMAWANHVFLGCRYPQKVMDKILS
                     MAEGIKVTDAPIHTTRDELVAKKG"
     misc_feature    1507..1824
                     /gene="CDKN2AIP"
                     /note="XRN-Two Binding Domain, XTBD; Region: XTBD;
                     pfam11952"
                     /db_xref="CDD:463409"
ORIGIN      
        1 aaaatttctg tgcctctgtt tttatgcact ttcattgggc acgacaggaa aatgggctct
       61 actattttca cacaatagtt gaattttgct tgttccagca tgtatataaa ttacctggct
      121 tcttgttaat cccatctaag tgaccattcc ttttttacct tgtttgatta ttgatttatt
      181 ttaaaatcac aatccacatt tatgagagga aaatttcttt ttatttcgta gtttatcatt
      241 cttgttactt atataagtga caagaatgat aaattataag tatcacttat tttattatta
      301 aattttatta atcataaaat acccaaatac ctaatattgg aaacataaca ataggcaagc
      361 cagcagctat gctttaagtc tggacattct aaaatggaaa aaatgcaaag aaaaatgtag
      421 ctctaagagg tgaagtttag gggcgtggag acaaatacac ttttccaagc cgcctcctgg
      481 gtatccgtcc agctaggggt tacagtatgt taatttaagg aaatacgacg gataccgaag
      541 gtactggcgc agcgtttatg ttactgacca aatatccacc ctagaggaag cagtactgcc
      601 cgggttgaac cgcggaaacc aaacccaagt ctgcggggtc aggagtagtt tcaaagactg
      661 ggctccacaa ggcaacatcg aactggatta aacgttatca tttaccttta ttattagtat
      721 aatacttata agctaatata cacctgcaca ttcctaaatg ccccgagact ggacggcctc
      781 agaatgcctc gcttgtctac attcgatttt ctgcataatc agaaaaaatg gaggcgagct
      841 ttgtttactt tggccccgct cgaaaccagc gtcctcgggc cgaggcgccc agacctcgcg
      901 gccggatggc gactcgagtc cgcgggaacg cgcgcggcac gcgaggactc ggcctgcccc
      961 acccggctgc cccggagccc gctgtcctcc gccgaccccc ggagcagcgg gcccggggcg
     1021 ggagcgcgtg gcgtcacaaa gcccagtcgg aacgctgggg ccgtcgccga agccgagggc
     1081 gcccggggcg aacacactag cggccctccc tagcagaacg gcaggcgcgc gaacccttta
     1141 tctcgccccg cctcccctac ccccgccgca ggggccgcag cgccgcggct tgggcgccgc
     1201 aaagcgtcct gggagagccg gctcgcgccg gaaggacgcg cgggcgctcg gcggcagcaa
     1261 ggttataaaa gggaaggagc cggcggcggg cggaagtggg cggttcagct gctcgcggcg
     1321 ctgttgtttc gtgtttgcgc ttcttgaggg gcgttctgtg gtgggccgct ggtgcaggcc
     1381 gcagtgacag ggccgctcgc cccgcagccc ccagcctcgg cgcagcgtcc gatcgcgacc
     1441 cgcaggccca acatggcgca ggaggtgtcg gagtacctga gccagaaccc gcgggtggcc
     1501 gcctgggtgg agacgctgcg ctccgacggc gagaccgaca aacactggcg ccaccgccgc
     1561 gagttcctgc tccgcaacgc cggggacctg gcccccgccg gcggcgctgc ctccgctcac
     1621 ccggaggagg ccgccgacgc cgagagcggg acccgcagtc ggcagctgca gcagctcatc
     1681 tccttttcca tggcctgggc caaccacgtc ttcctcgggt gccggtaccc tcaaaaagtt
     1741 atggataaaa tacttagtat ggctgaaggc atcaaagtga cagatgctcc aatccataca
     1801 acaagagacg aactggttgc caagaagggg tagaagagcc aacaaaaaaa cgagccatag
     1861 aaggaaaaaa cagttctgca gttgagcaaa aagatcatgt gaaaattcct gccaaaacag
     1921 agcgtgcatc agctcagcag gaaagtagtt cagcgtgttc gggatcaact accaagtcag
     1981 agagtagtgg gaactcagct cggagctctg gcaccctgag tcagaacagc tccacaagtg
     2041 atggagagcg ctctgtttcc agccaaagca gcagcattcc ctctcaggta acagcagtag
     2101 ggtgtggaaa agcttctgaa ccagaagctc cagataaaca tggttcagcg tcgttggttt
     2161 cttcgttgtt gaaatccagt gtgaatagtc atgtgaccca gtccgctgat tccagacaac
     2221 aaagtggatc cccgaaaaag agtgctttgg aaggctcttc agtctcggcc tctcagagca
     2281 tctcagagat tgaggtgccc ttgctgggct cctcaggaag ctcagaaata gagttgccac
     2341 tgttgtcttc taaacctagt tcagagacag cttcaagcgg gttaacttcc aaagctagtt
     2401 cagaggcaag tgtttcatca tcagtttcta aaaacagttc ctcatcaggc acatctttac
     2461 taacccccaa gagcaccacc tcagcaaaca cgatgctgac ttccaaaagc acttcgcagg
     2521 tagctgcatc actgttagct cccaagagca gctcccggac cagcggcgct ctggtttcca
     2581 aaagcacttc catagcaagt gtgtcccagc tggcttctaa gagcagctct cagagcagca
     2641 cgtcacagct gccttctgaa agtactgcgc aggcgagcga gagttctgtc agattctctt
     2701 gttgcaagtt aaccaatgaa gatgtgaaac agaagcagcc ttttttcaat agactgtaca
     2761 aaacggtggc atggaagttg gtggccgttg gtggctttag tcccagcgtg aatcacggag
     2821 agctcctaaa cgcagctgtc gaggctctga aagcaacgct ggatgtggtt ttcgtcccgc
     2881 taaaggaact ggcagatctg cctcaaaaca agagctctca agaaagtatt gtttgtgaac
     2941 tgagatgtaa gtctgtgtat ttgggcactg gctgtggaaa aagcaaagaa aacgcaaaag
     3001 cagttgcatc aagagaagcc ttgaagttat ttctcaagaa aaaggtggtg gtaaaaatat
     3061 gtaaaaggaa atacagaggc agtgaaatcg aagacttagt actcctcgat gaagagtcaa
     3121 ggcctgtaaa cttgcctcca gcattaaaac atcctcaaga attactgtaa taatgtccaa
     3181 aatgtcactg tgtacaatat ctggtatttg aagagaagaa ctggcttact tttgtataat
     3241 atgaaacaca gactttcaca aattttgtat tgcttttttc cagttttgca gaaaatttac
     3301 attctagttc tcttcacaca gtggaagttg taaataattt gtgaacgaca gtatacagta
     3361 aaaggtttat gcattagcag cataccagta tgctgtttta tttgctgaaa aaaatactgt
     3421 cttctatttt taatgacaca ttaggtacga tgtgtagttc tgtagtctta aaatttttgt
     3481 actactttga atttggtgaa aatgtattaa gttgtctacc atgctttttt ttttttctag
     3541 ctgaataaac cttcacatca aagaaaaggg gaccatagta tttgtctgaa agtctgtgaa
     3601 gcttaaggtt ttaagaatgt tgcctataat gttgaaccat gtctgttaaa gaataaaaga
     3661 gaaaatagtt gcctcagact atttttatga gaagctgtaa gcatttttta gatataaagc
     3721 agtgttaaat acttaaggtt attttattct gaagttgttt gaaattcacc atgattttga
     3781 cctctgcaga ttctttaagt gggttaattt atgttttgag gtaaagtaca atttacactt
     3841 tttcttaaag acgtaaatgt gggtttctat attaagcata ttttgtgact actactatta
     3901 acagattgat ttgtttagat attaaatgct ttaagctatt ttacctttt
//
LOCUS       XM_032618588            6859 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kelch repeat and BTB domain containing 11
            (KBTBD11), transcript variant X1, mRNA.
ACCESSION   XM_032618588
VERSION     XM_032618588.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6859
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6859
                     /gene="KBTBD11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746854"
     CDS             942..2873
                     /gene="KBTBD11"
                     /codon_start=1
                     /product="kelch repeat and BTB domain-containing protein
                     11"
                     /protein_id="XP_032474479.1"
                     /db_xref="GeneID:116746854"
                     /translation="MESPVAPCVLYPGDGACGQAGGRGGAPEAPGEGGLQPPDAAGGE
                     GAASPAQTPCSLSASLCFSSGDDSPPSCRRGRRVVQRQWEVGSADAGSPEGRASPEDP
                     VSPEERTSPEESASPEDPASPGECPPAEEPTSPEEAGDPAPVPPGVGPEHGEPDLLIE
                     VSGRRLRAHKAVLAARSDYFRARASRDVLRVQGVGWAALRLLLAYAYSGRMAGVRPDN
                     VADVVAGARRLQLPCAAQRATEAVAPQLSLANCFEVLSAAKRQRLAELREAAYRFMSD
                     HYLEVLREPAVFGRLSGAERDLLLRRRLRAGRARLLAAALGPAGERAGSRPQSPSGDA
                     EGRGDAAVYCFHEAAGEWRELTRLPEGAPARGCGLCVLYNYLFVAGGVGPPGPDGRAR
                     PSDRVFCYNPATDRWSTVRPLRQARSQLQLLALDGHLYAVGGECLLSVERYDPRADRW
                     AAVAPLPRGAFAVAHEATTCNGEIYVSGGSLFYRLLKYDPRRDEWQECPCSSSRERSA
                     DMVALDGFIYRFDLCGGRGDAPGAGPAGGVSVFRYHCLAKQWSRCASHLRPPGTPSGL
                     QPFRCAALDGTIYCVSRAGTWRFVPPPDGEPGAGDAGPEGSFELQSLRAPADARGLFF
                     PFVLNLPEEKPDRGEEGAV"
     misc_feature    <1011..>1349
                     /gene="KBTBD11"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
     misc_feature    1398..1706
                     /gene="KBTBD11"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; Region:
                     BTB_POZ; cl38908"
                     /db_xref="CDD:453885"
     misc_feature    1677..>1820
                     /gene="KBTBD11"
                     /note="BACK (BTB and C-terminal Kelch) domain; Region:
                     BACK; cl28903"
                     /db_xref="CDD:475122"
     misc_feature    1935..2687
                     /gene="KBTBD11"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; Region: NanM; COG3055"
                     /db_xref="CDD:442289"
     misc_feature    2034..2180
                     /gene="KBTBD11"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    2190..2312
                     /gene="KBTBD11"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    2454..2606
                     /gene="KBTBD11"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 cctcccgccc acgtccccgc gtccccgcct cggcgcgctg ctcggagcgg cggggctcca
       61 ggcgcggcct ccacggacgc ggaacacaaa gagcatggtg acatgacatg gaaacacctg
      121 atattccaac aaaggaagtc gcagaggaag gctcccgatg gatgaaggag gaaagccagt
      181 ctagtgtgtg cagtaactgt gtcttcctaa cacccacctg gcgactgaat catgccctcc
      241 ccgcttccag gtgaacattg tcgaggcagg cccatcagga gcgctgccga ggccaggaca
      301 cacacagata ttgtccggct gaccatccat aaaccttaat cgcacatggg agtcacgcac
      361 aaaaaacaag ctccctgggg cggctccctg tgaaacagca gtaaagtcag tgttctgaag
      421 tgtggactgc agcccgtctc tgattcgttg gtcctcagag acagagatgt gatggaatgt
      481 ggagggataa acactgactc aggaagaaag ggcaggcccg gttccttagg agcacctgac
      541 agctcagttc cgcagagcag gagctacaga cagagctgcg gctgcggctg cggctgcagg
      601 gtggtcctgt ctgtggactg atcatcacca cgcggtgcgg agaccgagcc acaaagaccc
      661 ctgcagacgg ccgccgggcg ggaaccttgc caggttcaca agttcagccg ggagcgcgct
      721 cgagtcgaca cacccctttc gccggagagg agagcgggcg ggcgcggggg gagctgcgtg
      781 cgattgaaaa ccagtgtgga cacaagggaa atctgatcgc gcgccagcag aagcgtgtga
      841 agccaggagc cccggaggag ccatcgacct tgggcagccc gaatccgggc gaagtcatgc
      901 cgggctgctg agcggggacg gcggccaggg cgagcgctcg catggagagc ccggtggccc
      961 cctgcgtcct ctacccgggg gacggagcgt gcggtcaggc cgggggccgg ggcggcgctc
     1021 ccgaggctcc gggagagggc ggcctgcagc cgccggacgc ggccgggggg gagggcgctg
     1081 cgtccccggc gcagacaccc tgcagtctca gcgcgtccct gtgcttcagc tccggggacg
     1141 attccccgcc ctcttgtcgc cgcggccggc gggtggtgca gaggcagtgg gaagtcggca
     1201 gcgcggacgc cgggtccccg gaagggcgcg cgtcccctga ggatcccgtg tccccggagg
     1261 agcgcacgtc cccagaagag tccgcgtccc cggaagatcc cgcgtccccc ggggagtgcc
     1321 cgccggccga ggagcccacg tccccggaag aggccgggga ccccgcgcct gtgccccccg
     1381 gcgtcgggcc ggagcacggg gagcccgacc tgctcatcga ggtgtctggc cgccggctgc
     1441 gggcgcacaa ggcggtgctg gcggcgcgca gcgactactt ccgtgcgcgc gcgtcgcggg
     1501 acgtgctgcg ggtgcagggc gtgggctggg cggcgctgcg gctgctgctg gcctacgcgt
     1561 acagcgggcg catggcgggc gtgcggcccg acaacgtggc cgacgtggtg gccggcgcgc
     1621 gccgcctaca gctgccctgc gccgcgcagc gcgccactga ggccgtggcg ccgcagctga
     1681 gcttggccaa ctgcttcgag gtgctgagcg cggccaagcg gcagcggctg gccgagctgc
     1741 gcgaggccgc ctaccgcttc atgagcgacc actacctaga agtgctgcgc gagcccgccg
     1801 tcttcgggcg cctgtcgggc gccgagcgcg acctgctgct gcgccgccgc ctgcgcgccg
     1861 gccgcgcccg tcttctggcc gccgcgctcg gcccggccgg ggagcgcgcg ggcagccggc
     1921 cgcagagccc gtcgggggac gcggagggcc gaggcgacgc cgccgtctac tgcttccacg
     1981 aggcggccgg cgagtggcgc gagctgacgc ggctacccga gggcgcgccg gctcggggct
     2041 gcgggctgtg cgtgctctac aactacctct tcgtggctgg cggcgtgggg cccccgggcc
     2101 ccgacggccg cgcgcggccc tcggaccggg tcttctgcta caacccggcc accgaccgct
     2161 ggagcaccgt gcggccgctg cgccaggcgc gctcgcagct gcagctgctg gccctggatg
     2221 gccacctgta cgccgtgggc ggcgagtgcc tgctcagcgt ggagcgctac gacccgcgcg
     2281 ctgaccgctg ggccgccgtg gccccgctgc cccggggcgc cttcgccgtg gcgcacgagg
     2341 ccaccacctg caacggcgag atctacgtgt ccgggggttc gctcttctac cgcctgctca
     2401 agtacgaccc gcggcgcgac gagtggcagg agtgtccgtg cagcagcagc cgcgagcgct
     2461 cggccgacat ggtggccctg gacggcttca tctaccgctt cgacctgtgc gggggccgcg
     2521 gcgatgcacc gggggccggg cctgcggggg gggtcagcgt gttccgctac cactgcctag
     2581 ccaagcagtg gagccgctgc gcctcgcacc tgcggccccc gggcacgccg tcgggcctac
     2641 agcccttccg ctgcgccgcg ctggatggca ccatctactg cgtgagccgc gcgggcacct
     2701 ggcgcttcgt gccacccccg gacggcgagc ccggcgccgg tgacgcgggc cccgaaggca
     2761 gcttcgagct ccagtcgctc cgagcccccg cggacgcccg gggcctgttc ttcccgttcg
     2821 tgctcaacct gccggaggag aagccagacc gaggcgagga gggcgccgtg tagggtgggc
     2881 cgggtcaccc gggcgtgtcc ctcggcagcc ctgggccagg ggacgccccg tgggccgagg
     2941 tcccaactgg gaaactggaa ggggcgaggg gagtggaggc ggggagggag agagtcgggg
     3001 gtgggccccg gcgggccccg cccagcccat gggatcgttt aaaggcttag aaggtagaag
     3061 cttgtcgcgg ggccttgaag atcttttgcg gtgctgtatt aaggcccgct gcctagtctg
     3121 cattcctttt gctttgcttt gctttgctta atggggtcga tggcaagatg taggatgtgt
     3181 gcagatagat aaccttacaa ataagataca aaatacctga gaaagaaaga aacagaatga
     3241 gagatgaagc ctccgggtgc agtgggtgag gcctggagtg taccgggatg tactgtcctc
     3301 ggtatcactc gcggagtggc cgggaggcta gacctgagtt gtgtggggta ccaggtaccg
     3361 ttgcttcctg caccaggaga ggggacctcg gggccacctc ccagagctga gatcctaaat
     3421 taggccaacg tgaactatat tagtggaacg actgaaagaa ggtcatactt ttttcggctt
     3481 gaggtttaaa attataactg ataagtaaag cttttaaacc ctttctaact tagcttaaaa
     3541 gttcctgcca catgtgctta acttgcggtt ggctccattc caaatgtagt aagtattaag
     3601 ggtgaaatct ttgattccca ataagatctg tccagtgaga actgaaagta tctcctctgt
     3661 catcacaggg gcccagatat ggtcaaaggc ccacacacct caagagcaaa gtccttctca
     3721 ccgcttaact gagatgggtt taatatcttc aagttaagag atgttaatga ttatgttcag
     3781 tgatgtagta acgagttgct ctgatttgaa ttctaaatct tcggcgactg aatgttttcc
     3841 gaagcgcatg tcatcagtag gaaaagctga cagtggccgt ggtgcttgtc tgctttaaaa
     3901 ggagcatttg gtacccacca ggtatgccca gctgctttga tatttcatag tgggctcaga
     3961 aagagtagta tcccccccca ccccgcaaaa gcaggttaaa atcctttctt tttgagagtt
     4021 ctaaagaata acatacaggc acagttgaac ccccactact tacaatgttt taaatatgaa
     4081 ttctgtcatc ctgatgaggg aaattcattt ttacaagcat cagtctaaga agttgtggtg
     4141 gagtgacagc atagtaacgt aaggggaaat aacatatatg tataacgtag tttagcaagt
     4201 aaactacact tttctaattg tgaattccag aataccatag tagaagtaac atgaaattca
     4261 gtactttggt agggcacaag gatgaaaaac aaatccgttg atctttcctc atttgttata
     4321 acattttact ttccaagtgt gtacacacag ggcttactgt ttattaaaag tttaaggata
     4381 aagtgtatac gctcataaat aggggccaag tgatctgcat tctgagtcca atccactttt
     4441 tttattatta caataggaaa agtacacatt gaaaggtatt ggcacataag tagatgaagt
     4501 tatgtgtacc ttactatgat ttacttgtgg atccagtgat gggggggtta cctctgtctg
     4561 tgccaatcag tgggtatgtg ggacataggt tatgcttttt aaagagtctg tggttatgta
     4621 agtgatcagt taaactgttt aggaatgata gcttgaatca tgcttgcgcc agagcacggg
     4681 gtttaccgtt tcagcgggtg catcctggtg acgtgtgtgc ctgcccgtca ctgcccctga
     4741 cctgagacga tgctcggcaa cttggtccat cgtcttagga aagaaaaaca ggcttcagat
     4801 tgcctgactt ctttggcctt ttggtaggag tagactggag acgtggcagg aggaaaagaa
     4861 ttgaaatcca aaataaataa tgtccttcta aagacatgag catttcatat gatagtacct
     4921 ttttctctag actttcatta tttatggtaa aacttttaca tgaaatggaa ccaagctaat
     4981 attttcattc cttccgtatc aaagtcatga gatattatca ctgtgatttt acttgaggaa
     5041 tcattcctat gatgtttacc gtttcaaaac atcaacgctg aaagtgggct tccaaagtaa
     5101 actctccccg tagaagatgg gagacctgtt agatgtcacg tgcacacagc cacacgataa
     5161 catgcccagc tggagtgttt gtatattatt tcatccttta attgaacgaa gaaatgcctg
     5221 gactagacgt agcatcactt tctgtgggag ctggccccgg agtcccaggg atttgtcagg
     5281 atgagatgcc cgaggatgcc taaggatggg tagaggattt agaaccttgc agaccacact
     5341 tctactagta atatcactga gaacagatac cagagcacct ggcatgctga gaggaccagt
     5401 ttaatttgct tttggaggcc agtacctggg gtgtagggcc aggagggtgg tgcaccgatt
     5461 acaccaacgg aaaagccacc ccatgcaaga tcctcggttt ggaggatggc taggggaggg
     5521 gcagtcctgg ctgagacttc cctccaggtc tgatgttcca aggatggatc atgtcacatt
     5581 caacgtgatg tgccaagtct gtacgcagct ctatttagag aaacagttgg tgcaaaaata
     5641 tccctgctct tcgatcagtt gagtcaaacg aagctagtgc atttacgaca tccatccgta
     5701 gttcacatga aattaagaaa cccaggcaca ctgacattcc cagatatttg aaagagcagt
     5761 ggcattttaa gggggaaggc tataatttgg gaaagctcga tcttttggtt agctcacaag
     5821 caatgacttt tgtatcgtta atcaaggttc atttgggatc caaaggaacg gggttaagac
     5881 gtcttcactt cctttctgct tttacctttg gttcggggaa cagccgcagt gccggcgtgg
     5941 cctctggcag ctttacggga ctggatttgg aactcggtga ctcgatttct gaatctctgg
     6001 cagcaccaat ctcctttcct tgaagacaat ggaagttctt ttgctactta gttaaaactc
     6061 ctccctttgt atcagttttg ctacaaatcc ttaaaatgaa tcacctgctc cattcctgtt
     6121 catttctggt gtcccttcag taattctgct agctgctgtt tgatctgtgg gtctcttggg
     6181 taacttcctg tgaaagattt tgaagtgaga tgcaatgttt ttgaggtcct ttgtgttttc
     6241 ctgaagttaa gatggtttca ggacatgatc tgttgtaaca ccttcctggg gcgatatgta
     6301 aacagaagcg ctctcttgtg ttctgtttta ttgtagatgc tttcctagct tacaaaatgt
     6361 tttgttttgg tgtttttaaa aaatatatca gtgtccttat ttttcccttt cctttgcaat
     6421 atcattattt atgggaagat aagaagagct aaaggtggga atgtgtcatc ttctggttgc
     6481 gtctgaacgt atgtcagcgg ccacgttctc tacactttcc ccccttccag gaaggtgcct
     6541 ggaccacagg agctggcggg gcacttcgta cctgcttggt gaattggttt gagatgaatt
     6601 gaaataaagg cctagatgtg ttctcctgcg agatgaaagc tcctctgagg cttttgaaag
     6661 ctgtaagcag tgctgcagtg tggccgggta ttaaaggcaa acaggtgtct tgaagacaca
     6721 gttcaggccg gctgatgctt tatggatcaa cgcttcagtt tctaggtcct gggtaccaat
     6781 cgcgtaaaac cttgtacatc tgtctgttta tcctgagatg aaataaacca ctgggcgatg
     6841 ccagcgctcc tgaaacctg
//
LOCUS       XM_032618589            6810 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kelch repeat and BTB domain containing 11
            (KBTBD11), transcript variant X2, mRNA.
ACCESSION   XM_032618589
VERSION     XM_032618589.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6810
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6810
                     /gene="KBTBD11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746854"
     CDS             893..2824
                     /gene="KBTBD11"
                     /codon_start=1
                     /product="kelch repeat and BTB domain-containing protein
                     11"
                     /protein_id="XP_032474480.1"
                     /db_xref="GeneID:116746854"
                     /translation="MESPVAPCVLYPGDGACGQAGGRGGAPEAPGEGGLQPPDAAGGE
                     GAASPAQTPCSLSASLCFSSGDDSPPSCRRGRRVVQRQWEVGSADAGSPEGRASPEDP
                     VSPEERTSPEESASPEDPASPGECPPAEEPTSPEEAGDPAPVPPGVGPEHGEPDLLIE
                     VSGRRLRAHKAVLAARSDYFRARASRDVLRVQGVGWAALRLLLAYAYSGRMAGVRPDN
                     VADVVAGARRLQLPCAAQRATEAVAPQLSLANCFEVLSAAKRQRLAELREAAYRFMSD
                     HYLEVLREPAVFGRLSGAERDLLLRRRLRAGRARLLAAALGPAGERAGSRPQSPSGDA
                     EGRGDAAVYCFHEAAGEWRELTRLPEGAPARGCGLCVLYNYLFVAGGVGPPGPDGRAR
                     PSDRVFCYNPATDRWSTVRPLRQARSQLQLLALDGHLYAVGGECLLSVERYDPRADRW
                     AAVAPLPRGAFAVAHEATTCNGEIYVSGGSLFYRLLKYDPRRDEWQECPCSSSRERSA
                     DMVALDGFIYRFDLCGGRGDAPGAGPAGGVSVFRYHCLAKQWSRCASHLRPPGTPSGL
                     QPFRCAALDGTIYCVSRAGTWRFVPPPDGEPGAGDAGPEGSFELQSLRAPADARGLFF
                     PFVLNLPEEKPDRGEEGAV"
     misc_feature    <962..>1300
                     /gene="KBTBD11"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
     misc_feature    1349..1657
                     /gene="KBTBD11"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; Region:
                     BTB_POZ; cl38908"
                     /db_xref="CDD:453885"
     misc_feature    1628..>1771
                     /gene="KBTBD11"
                     /note="BACK (BTB and C-terminal Kelch) domain; Region:
                     BACK; cl28903"
                     /db_xref="CDD:475122"
     misc_feature    1886..2638
                     /gene="KBTBD11"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; Region: NanM; COG3055"
                     /db_xref="CDD:442289"
     misc_feature    1985..2131
                     /gene="KBTBD11"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    2141..2263
                     /gene="KBTBD11"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
     misc_feature    2405..2557
                     /gene="KBTBD11"
                     /note="KELCH repeat [structural motif]; Region: KELCH
                     repeat"
                     /db_xref="CDD:276965"
ORIGIN      
        1 ccggggtgga gggcgaggcg cagagctgag aggaacacaa agagcatggt gacatgacat
       61 ggaaacacct gatattccaa caaaggaagt cgcagaggaa ggctcccgat ggatgaagga
      121 ggaaagccag tctagtgtgt gcagtaactg tgtcttccta acacccacct ggcgactgaa
      181 tcatgccctc cccgcttcca ggtgaacatt gtcgaggcag gcccatcagg agcgctgccg
      241 aggccaggac acacacagat attgtccggc tgaccatcca taaaccttaa tcgcacatgg
      301 gagtcacgca caaaaaacaa gctccctggg gcggctccct gtgaaacagc agtaaagtca
      361 gtgttctgaa gtgtggactg cagcccgtct ctgattcgtt ggtcctcaga gacagagatg
      421 tgatggaatg tggagggata aacactgact caggaagaaa gggcaggccc ggttccttag
      481 gagcacctga cagctcagtt ccgcagagca ggagctacag acagagctgc ggctgcggct
      541 gcggctgcag ggtggtcctg tctgtggact gatcatcacc acgcggtgcg gagaccgagc
      601 cacaaagacc cctgcagacg gccgccgggc gggaaccttg ccaggttcac aagttcagcc
      661 gggagcgcgc tcgagtcgac acaccccttt cgccggagag gagagcgggc gggcgcgggg
      721 ggagctgcgt gcgattgaaa accagtgtgg acacaaggga aatctgatcg cgcgccagca
      781 gaagcgtgtg aagccaggag ccccggagga gccatcgacc ttgggcagcc cgaatccggg
      841 cgaagtcatg ccgggctgct gagcggggac ggcggccagg gcgagcgctc gcatggagag
      901 cccggtggcc ccctgcgtcc tctacccggg ggacggagcg tgcggtcagg ccgggggccg
      961 gggcggcgct cccgaggctc cgggagaggg cggcctgcag ccgccggacg cggccggggg
     1021 ggagggcgct gcgtccccgg cgcagacacc ctgcagtctc agcgcgtccc tgtgcttcag
     1081 ctccggggac gattccccgc cctcttgtcg ccgcggccgg cgggtggtgc agaggcagtg
     1141 ggaagtcggc agcgcggacg ccgggtcccc ggaagggcgc gcgtcccctg aggatcccgt
     1201 gtccccggag gagcgcacgt ccccagaaga gtccgcgtcc ccggaagatc ccgcgtcccc
     1261 cggggagtgc ccgccggccg aggagcccac gtccccggaa gaggccgggg accccgcgcc
     1321 tgtgcccccc ggcgtcgggc cggagcacgg ggagcccgac ctgctcatcg aggtgtctgg
     1381 ccgccggctg cgggcgcaca aggcggtgct ggcggcgcgc agcgactact tccgtgcgcg
     1441 cgcgtcgcgg gacgtgctgc gggtgcaggg cgtgggctgg gcggcgctgc ggctgctgct
     1501 ggcctacgcg tacagcgggc gcatggcggg cgtgcggccc gacaacgtgg ccgacgtggt
     1561 ggccggcgcg cgccgcctac agctgccctg cgccgcgcag cgcgccactg aggccgtggc
     1621 gccgcagctg agcttggcca actgcttcga ggtgctgagc gcggccaagc ggcagcggct
     1681 ggccgagctg cgcgaggccg cctaccgctt catgagcgac cactacctag aagtgctgcg
     1741 cgagcccgcc gtcttcgggc gcctgtcggg cgccgagcgc gacctgctgc tgcgccgccg
     1801 cctgcgcgcc ggccgcgccc gtcttctggc cgccgcgctc ggcccggccg gggagcgcgc
     1861 gggcagccgg ccgcagagcc cgtcggggga cgcggagggc cgaggcgacg ccgccgtcta
     1921 ctgcttccac gaggcggccg gcgagtggcg cgagctgacg cggctacccg agggcgcgcc
     1981 ggctcggggc tgcgggctgt gcgtgctcta caactacctc ttcgtggctg gcggcgtggg
     2041 gcccccgggc cccgacggcc gcgcgcggcc ctcggaccgg gtcttctgct acaacccggc
     2101 caccgaccgc tggagcaccg tgcggccgct gcgccaggcg cgctcgcagc tgcagctgct
     2161 ggccctggat ggccacctgt acgccgtggg cggcgagtgc ctgctcagcg tggagcgcta
     2221 cgacccgcgc gctgaccgct gggccgccgt ggccccgctg ccccggggcg ccttcgccgt
     2281 ggcgcacgag gccaccacct gcaacggcga gatctacgtg tccgggggtt cgctcttcta
     2341 ccgcctgctc aagtacgacc cgcggcgcga cgagtggcag gagtgtccgt gcagcagcag
     2401 ccgcgagcgc tcggccgaca tggtggccct ggacggcttc atctaccgct tcgacctgtg
     2461 cgggggccgc ggcgatgcac cgggggccgg gcctgcgggg ggggtcagcg tgttccgcta
     2521 ccactgccta gccaagcagt ggagccgctg cgcctcgcac ctgcggcccc cgggcacgcc
     2581 gtcgggccta cagcccttcc gctgcgccgc gctggatggc accatctact gcgtgagccg
     2641 cgcgggcacc tggcgcttcg tgccaccccc ggacggcgag cccggcgccg gtgacgcggg
     2701 ccccgaaggc agcttcgagc tccagtcgct ccgagccccc gcggacgccc ggggcctgtt
     2761 cttcccgttc gtgctcaacc tgccggagga gaagccagac cgaggcgagg agggcgccgt
     2821 gtagggtggg ccgggtcacc cgggcgtgtc cctcggcagc cctgggccag gggacgcccc
     2881 gtgggccgag gtcccaactg ggaaactgga aggggcgagg ggagtggagg cggggaggga
     2941 gagagtcggg ggtgggcccc ggcgggcccc gcccagccca tgggatcgtt taaaggctta
     3001 gaaggtagaa gcttgtcgcg gggccttgaa gatcttttgc ggtgctgtat taaggcccgc
     3061 tgcctagtct gcattccttt tgctttgctt tgctttgctt aatggggtcg atggcaagat
     3121 gtaggatgtg tgcagataga taaccttaca aataagatac aaaatacctg agaaagaaag
     3181 aaacagaatg agagatgaag cctccgggtg cagtgggtga ggcctggagt gtaccgggat
     3241 gtactgtcct cggtatcact cgcggagtgg ccgggaggct agacctgagt tgtgtggggt
     3301 accaggtacc gttgcttcct gcaccaggag aggggacctc ggggccacct cccagagctg
     3361 agatcctaaa ttaggccaac gtgaactata ttagtggaac gactgaaaga aggtcatact
     3421 tttttcggct tgaggtttaa aattataact gataagtaaa gcttttaaac cctttctaac
     3481 ttagcttaaa agttcctgcc acatgtgctt aacttgcggt tggctccatt ccaaatgtag
     3541 taagtattaa gggtgaaatc tttgattccc aataagatct gtccagtgag aactgaaagt
     3601 atctcctctg tcatcacagg ggcccagata tggtcaaagg cccacacacc tcaagagcaa
     3661 agtccttctc accgcttaac tgagatgggt ttaatatctt caagttaaga gatgttaatg
     3721 attatgttca gtgatgtagt aacgagttgc tctgatttga attctaaatc ttcggcgact
     3781 gaatgttttc cgaagcgcat gtcatcagta ggaaaagctg acagtggccg tggtgcttgt
     3841 ctgctttaaa aggagcattt ggtacccacc aggtatgccc agctgctttg atatttcata
     3901 gtgggctcag aaagagtagt atcccccccc accccgcaaa agcaggttaa aatcctttct
     3961 ttttgagagt tctaaagaat aacatacagg cacagttgaa cccccactac ttacaatgtt
     4021 ttaaatatga attctgtcat cctgatgagg gaaattcatt tttacaagca tcagtctaag
     4081 aagttgtggt ggagtgacag catagtaacg taaggggaaa taacatatat gtataacgta
     4141 gtttagcaag taaactacac ttttctaatt gtgaattcca gaataccata gtagaagtaa
     4201 catgaaattc agtactttgg tagggcacaa ggatgaaaaa caaatccgtt gatctttcct
     4261 catttgttat aacattttac tttccaagtg tgtacacaca gggcttactg tttattaaaa
     4321 gtttaaggat aaagtgtata cgctcataaa taggggccaa gtgatctgca ttctgagtcc
     4381 aatccacttt ttttattatt acaataggaa aagtacacat tgaaaggtat tggcacataa
     4441 gtagatgaag ttatgtgtac cttactatga tttacttgtg gatccagtga tgggggggtt
     4501 acctctgtct gtgccaatca gtgggtatgt gggacatagg ttatgctttt taaagagtct
     4561 gtggttatgt aagtgatcag ttaaactgtt taggaatgat agcttgaatc atgcttgcgc
     4621 cagagcacgg ggtttaccgt ttcagcgggt gcatcctggt gacgtgtgtg cctgcccgtc
     4681 actgcccctg acctgagacg atgctcggca acttggtcca tcgtcttagg aaagaaaaac
     4741 aggcttcaga ttgcctgact tctttggcct tttggtagga gtagactgga gacgtggcag
     4801 gaggaaaaga attgaaatcc aaaataaata atgtccttct aaagacatga gcatttcata
     4861 tgatagtacc tttttctcta gactttcatt atttatggta aaacttttac atgaaatgga
     4921 accaagctaa tattttcatt ccttccgtat caaagtcatg agatattatc actgtgattt
     4981 tacttgagga atcattccta tgatgtttac cgtttcaaaa catcaacgct gaaagtgggc
     5041 ttccaaagta aactctcccc gtagaagatg ggagacctgt tagatgtcac gtgcacacag
     5101 ccacacgata acatgcccag ctggagtgtt tgtatattat ttcatccttt aattgaacga
     5161 agaaatgcct ggactagacg tagcatcact ttctgtggga gctggccccg gagtcccagg
     5221 gatttgtcag gatgagatgc ccgaggatgc ctaaggatgg gtagaggatt tagaaccttg
     5281 cagaccacac ttctactagt aatatcactg agaacagata ccagagcacc tggcatgctg
     5341 agaggaccag tttaatttgc ttttggaggc cagtacctgg ggtgtagggc caggagggtg
     5401 gtgcaccgat tacaccaacg gaaaagccac cccatgcaag atcctcggtt tggaggatgg
     5461 ctaggggagg ggcagtcctg gctgagactt ccctccaggt ctgatgttcc aaggatggat
     5521 catgtcacat tcaacgtgat gtgccaagtc tgtacgcagc tctatttaga gaaacagttg
     5581 gtgcaaaaat atccctgctc ttcgatcagt tgagtcaaac gaagctagtg catttacgac
     5641 atccatccgt agttcacatg aaattaagaa acccaggcac actgacattc ccagatattt
     5701 gaaagagcag tggcatttta agggggaagg ctataatttg ggaaagctcg atcttttggt
     5761 tagctcacaa gcaatgactt ttgtatcgtt aatcaaggtt catttgggat ccaaaggaac
     5821 ggggttaaga cgtcttcact tcctttctgc ttttaccttt ggttcgggga acagccgcag
     5881 tgccggcgtg gcctctggca gctttacggg actggatttg gaactcggtg actcgatttc
     5941 tgaatctctg gcagcaccaa tctcctttcc ttgaagacaa tggaagttct tttgctactt
     6001 agttaaaact cctccctttg tatcagtttt gctacaaatc cttaaaatga atcacctgct
     6061 ccattcctgt tcatttctgg tgtcccttca gtaattctgc tagctgctgt ttgatctgtg
     6121 ggtctcttgg gtaacttcct gtgaaagatt ttgaagtgag atgcaatgtt tttgaggtcc
     6181 tttgtgtttt cctgaagtta agatggtttc aggacatgat ctgttgtaac accttcctgg
     6241 ggcgatatgt aaacagaagc gctctcttgt gttctgtttt attgtagatg ctttcctagc
     6301 ttacaaaatg ttttgttttg gtgtttttaa aaaatatatc agtgtcctta tttttccctt
     6361 tcctttgcaa tatcattatt tatgggaaga taagaagagc taaaggtggg aatgtgtcat
     6421 cttctggttg cgtctgaacg tatgtcagcg gccacgttct ctacactttc cccccttcca
     6481 ggaaggtgcc tggaccacag gagctggcgg ggcacttcgt acctgcttgg tgaattggtt
     6541 tgagatgaat tgaaataaag gcctagatgt gttctcctgc gagatgaaag ctcctctgag
     6601 gcttttgaaa gctgtaagca gtgctgcagt gtggccgggt attaaaggca aacaggtgtc
     6661 ttgaagacac agttcaggcc ggctgatgct ttatggatca acgcttcagt ttctaggtcc
     6721 tgggtaccaa tcgcgtaaaa ccttgtacat ctgtctgttt atcctgagat gaaataaacc
     6781 actgggcgat gccagcgctc ctgaaacctg
//
LOCUS       XM_032618590            3938 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial calcium uptake family
            member 3 (MICU3), transcript variant X1, mRNA.
ACCESSION   XM_032618590
VERSION     XM_032618590.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3938
                     /gene="MICU3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746855"
     CDS             8..1606
                     /gene="MICU3"
                     /codon_start=1
                     /product="calcium uptake protein 3, mitochondrial isoform
                     X1"
                     /protein_id="XP_032474481.1"
                     /db_xref="GeneID:116746855"
                     /translation="MAALRRLLRPPPRLPPPPSPPHPFPGPCGRPAGIAPGPPGRPFC
                     REEEEGAVAEAAWRRRRRWGELSIAAAAGGGLVGLVCYQLYGDPRADSARAPAPWLPS
                     KSAAAEPEEPPRGRGLLPIPVAAAKETVAVGRTDIEDLDLYATSRERRFRLFASVECE
                     GQLFMTPYDFILAVTTDEPKFAKTWKSLSKQELNQMLSETPPVWKGSSKLFRSLKERG
                     VISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVLQEIFRKKNEKRETK
                     GDEEKRAMLRLQLYGYHSPPNSVLKTDAEELVSRSYWDTLRRNTSQALFSDLAERADD
                     ITNLVTDTTLLVHFFGKKGKAELNFEDFYRFMDNLQTEVLEIEFLSYSNGMNTISEED
                     FAHILLRYTNVENTSVFLENVRYSIPEEKGITFDEFRSFFQFLNNLEDFAIALNMYNF
                     ASRSIGQDEFKRAVYVATGLRLSPHLVNTVFKIFDVDKDDQLSYKEFIGIMKDRLHRG
                     FRGYKTVQNYPTFKSCLKKELHSR"
     misc_feature    719..1522
                     /gene="MICU3"
                     /note="EF-hand, calcium binding motif, found in calcium
                     uptake protein 3, mitochondrial (MICU3) and similar
                     proteins; Region: EFh_MICU3; cd16175"
                     /db_xref="CDD:320083"
     misc_feature    719..808
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320083"
     misc_feature    order(746..748,752..754,758..760,779..781,1460..1462,
                     1466..1468,1472..1474,1493..1495)
                     /gene="MICU3"
                     /note="Ca binding site [ion binding]; other site"
                     /db_xref="CDD:320083"
     misc_feature    1034..1126
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320083"
     misc_feature    1322..1411
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320083"
     misc_feature    1433..1522
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320083"
ORIGIN      
        1 tcccgctatg gctgcgctgc ggaggcttct gcgtccgccg cctcggcttc cgcctccgcc
       61 ctcgcctccc catcccttcc ctgggccgtg cgggcggcct gcgggcatag ccccgggccc
      121 tcccggccgg cccttctgcc gggaggagga ggagggggct gtggctgagg cggcttggag
      181 gcggcggcgg cgctgggggg agctgagcat agcggctgcg gccggcgggg gtctggtcgg
      241 cctggtgtgc taccagctgt atggggaccc cagggccgac tccgcgcggg cgccggcccc
      301 ctggctcccc tccaagagcg cggccgcaga gccggaggaa ccgccccgcg gccgggggct
      361 gcttcccatc ccggtcgccg ctgccaagga gacggttgct gttggcagaa cagacattga
      421 agacctagat ctctatgcaa catctcggga aaggcgattt cgtttgtttg cttctgtaga
      481 atgtgaaggg cagttattca tgactccata tgattttatt ttggctgtta caacagatga
      541 gcccaaattt gctaaaacat ggaagtcact ttccaagcag gaattaaatc aaatgttatc
      601 agaaacacca ccagtttgga aaggatcatc aaagctattt cgaagtctta aagaaagagg
      661 tgtgatttct tacacagaat atctttttct tttatgtatt ttaacaaagc cacatgcagg
      721 ttttagaata gctttcaaca tgtttgacac cgatggcaat gagatggtag ataaaaagga
      781 gtttttggtg cttcaagaaa tattcaggaa aaaaaatgaa aagagagaaa ctaaaggaga
      841 tgaagaaaag cgtgcaatgc tgcgtcttca actttatgga taccattctc ctcctaatag
      901 tgtacttaaa acagatgctg aggaacttgt ctccagaagc tattgggata cactgagacg
      961 taatacaagc caagcactct tttcagacct cgcagagcgt gctgatgaca ttacaaactt
     1021 agtaacagat actacacttc ttgtacactt ttttggaaag aaaggaaaag ctgagctcaa
     1081 ctttgaagat ttttatagat tcatggataa cctccaaaca gaagttctag aaatagaatt
     1141 cctttcctac tctaatggga tgaatactat cagtgaagaa gattttgctc atattctttt
     1201 acgatacaca aatgtggaaa atacatcagt atttttggaa aatgtgcgtt atagtatacc
     1261 tgaagaaaag ggcattacat ttgatgaatt caggtcattt ttccagtttt tgaacaacct
     1321 agaagacttt gcaatagcct tgaatatgta taattttgca agtcgctcta tagggcaaga
     1381 tgaatttaaa cgtgccgtct atgtagccac tggcctcaga ctttcaccac atttagtgaa
     1441 cacagtcttt aagatttttg atgttgacaa agatgatcaa ttaagctata aagaattcat
     1501 tggaattatg aaagacagac tccatagagg attccggggt tataaaacag ttcagaatta
     1561 tcccactttc aaatcctgtc tgaagaagga acttcatagc agataagtac ttctaaagca
     1621 aagtttaaag gattattatc tacttgaaag tgcaagaagc aaaaacttca gagggcggaa
     1681 gcaggtctga gatcagaact tgtgtaaatg aaggaaaagg tgaaatgcta attataattt
     1741 tttctttaac tgaatttttg aatataagat gcatctgctt actaattact aatgttacgt
     1801 gttatcatgc atcttcttac tactaacgtt acgtgttatc atgttgagct tttgacttga
     1861 tttactgaac tctgcacttt ttcattccct ttggattctt ccagtgactg tataaaaatg
     1921 tattttaatt ttttaaaaga ttcattagaa atttgtctca tttcaaaata atgtatgact
     1981 cgtggaatct agatcactta aaaatgaaca gcaacatatt tttggtttta ggctgaactt
     2041 attatcagaa aatgaatatt ccttgagatt tatcttaggg cccttagaat tgttaataga
     2101 tctccaggct tttaattaca ttgaagtaat tttgaaacac aaatagaaat taagctacta
     2161 tacaatatga tggtttacac tgtactttta acttttaaaa ttgcttaatt aacatatatt
     2221 gtttgaatca tataaagttt tttttaagtt tttgttcatt taccaaagtc aacagaatgt
     2281 ctgatattat tttatgtata cagtaattta aaatgtaaat tttttttctc aaaaaaactc
     2341 atacattaat ggtagaaaca gtggtagttt ttgtagcagt agtcactgtt attgtcatta
     2401 ttgttttaaa catggtgcag ctcctgatag cagatggtac atgttaataa cagtagtaaa
     2461 aataatatct tgaggctctg taacttatcg catattgtta ttatgtctgt ggtgtcaaaa
     2521 tgagtattat aaaagattaa tataaaatgg tttagcagac tgaagtatat attaggtaga
     2581 agttaatatt tgtttcttgc gaaaggacca catgttaaag taatgccaaa cagccagtaa
     2641 tcatgaatac tttaaataga atttattatt tcaaaatgtc ttaaaagaga aaagataaac
     2701 tttctattga aaaacagcaa aattagattt tctcctggag aaaataactt gataggattt
     2761 aatggaaatc tgttcaatta aaaaaatgta gtttataaaa agttactatg caaaaataga
     2821 acaatgaatt taaattatac tgtatgtgga agataggttc atttatcttc taagatgtac
     2881 taaatataaa ctgcacacac tccaactgtt atcttgcttt tatatatgaa aataggaaat
     2941 actgactttg tttttgttaa gttattaaag gtgaaattga tagttctgca tcagcctatt
     3001 tatgaaagta atgttattcc caagaatatg ttgttagcat tgacaatgca tttttagact
     3061 ttttacattc tttatctgat attatttatt acattgatat agaaatatgt gattcatcag
     3121 ttttaggatt tcatatagta taatttcacc tgctttgcag gttgattcag ttgattaact
     3181 aaatgagaat atctaccttc tcatttaacg tgccccagct ctattttacc ttacactgaa
     3241 tgttctcaat attatttgct atctaaaaga atggaaaaaa tgcaacttac ttttatcttt
     3301 aattataaac taaattatct tgcatatatg gaaaaattgc tatttagaac agtcctataa
     3361 atagatatta aaaactgaat tagatcatta agattcttta taattctgcc attctcccaa
     3421 ggaatactac atagtaacct ttattcttta ttgcttatca gagtgaatgg atactcatct
     3481 gcttataaga ctgcagcata atattaaaat gcaaataaat aaaatattct gatcaattaa
     3541 aatggaaaag agtagtaaat tatggtgatt ctccacatat tatcactctt gaactttatc
     3601 atctataaaa tgggaggtaa aaatatctca ctggactgtt gtttacatca attttaaaaa
     3661 ttttaagtgc tttgaaaata gtaatgtact aaatacatgt atgctattct cagtatttcc
     3721 ttctacaaac tattccttgg aaagatgaag ctatacatga aattttagta tcatactctt
     3781 tacagaagac tttatgatga aaggtttatg gtaattctca gaatcatttc ttattatgaa
     3841 tttcatttaa gttccagttt attgttctta tgtaaagtga cctgtcttac attcttatgt
     3901 tatcttaaaa taaatatact tgctgttgaa tcaagaaa
//
LOCUS       XR_004347895            4005 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial calcium uptake family
            member 3 (MICU3), transcript variant X2, misc_RNA.
ACCESSION   XR_004347895
VERSION     XR_004347895.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4005
                     /gene="MICU3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746855"
     misc_RNA        1..4005
                     /gene="MICU3"
                     /product="mitochondrial calcium uptake family member 3,
                     transcript variant X2"
                     /db_xref="GeneID:116746855"
ORIGIN      
        1 tcccgctatg gctgcgctgc ggaggcttct gcgtccgccg cctcggcttc cgcctccgcc
       61 ctcgcctccc catcccttcc ctgggccgtg cgggcggcct gcgggcatag ccccgggccc
      121 tcccggccgg cccttctgcc gggaggagga ggagggggct gtggctgagg cggcttggag
      181 gcggcggcgg cgctgggggg agctgagcat agcggctgcg gccggcgggg gtctggtcgg
      241 cctggtgtgc taccagctgt atggggaccc cagggccgac tccgcgcggg cgccggcccc
      301 ctggctcccc tccaagagcg cggccgcaga gccggaggaa ccgccccgcg gccgggggct
      361 gcttcccatc ccggtcgccg ctgccaagga gacggttgct gttggcagaa cagacattga
      421 agacctagat ctctatgcaa catctcggga aaggcgattt cgtttgtttg cttctgtaga
      481 atgtgaaggg cagttattca tgactccata tgattttatt ttggctgtta caacagatga
      541 gcccaaattt gctaaaacat ggaagtcact ttccaagcag gaattaaatc aaatgttatc
      601 agaaacacca ccagtttgga aaggatcatc aaagctattt cgaagtctta aagaaagagg
      661 tgtgatttct tacacagaat atctttttct tttatgtatt ttaacaaagc cacatgcagg
      721 ttttagaata gctttcaaca tgtttgacac cgatggcaat gagatggtag ataaaaagga
      781 gtttttggtg cttcaagaaa tattcaggaa aaaaaatgaa aagagagaaa ctaaaggaga
      841 tgaagaaaag cgtgcaatgc tgcgtcttca actttatgga taccattctc ctcctaatag
      901 tgtacttaaa acagatgctg aggaacttgt ctccagaagc tattgggata cactgagacg
      961 taatacaagc caagcactct tttcagacct cgcagagcgt gctgatgaca ttacaaactt
     1021 agtaacagat actacacttc ttgtacactt ttttggaaag aaaggaaaag ctgagctcaa
     1081 ctttgaagat ttttatagat tcatggataa cctccaaaca gaagttctag aaatagaatt
     1141 cctttcctac tctaatggga tgaatactat cagtgaagaa gattttgctc atattctttt
     1201 acgatacaca aatgtggaaa atacatcagt atttttggaa aatgtgcgtt atagtatacc
     1261 tgaagaaaag ggcattacat ttgatgaatt caggtcattt ttccagtttt tgaacaacct
     1321 agaagacttt gcaatagcct tgaatatgta taattttgca agtcgctcta tagggcaaga
     1381 tgaatttaaa cgtgccgtct atgtagccac tggcctcaga ctttcaccac atttagtgaa
     1441 cacagtcttt aagatttttg atgttgacaa agatgatcaa ttaagctata aagaattcat
     1501 tggaattatg aaagacagac tccatagagg attccggatt tccactaggc aacgtgaggt
     1561 tcttaagtca ctgcatattc agtacttttt atatggaaaa tgagggttat aaaacagttc
     1621 agaattatcc cactttcaaa tcctgtctga agaaggaact tcatagcaga taagtacttc
     1681 taaagcaaag tttaaaggat tattatctac ttgaaagtgc aagaagcaaa aacttcagag
     1741 ggcggaagca ggtctgagat cagaacttgt gtaaatgaag gaaaaggtga aatgctaatt
     1801 ataatttttt ctttaactga atttttgaat ataagatgca tctgcttact aattactaat
     1861 gttacgtgtt atcatgcatc ttcttactac taacgttacg tgttatcatg ttgagctttt
     1921 gacttgattt actgaactct gcactttttc attccctttg gattcttcca gtgactgtat
     1981 aaaaatgtat tttaattttt taaaagattc attagaaatt tgtctcattt caaaataatg
     2041 tatgactcgt ggaatctaga tcacttaaaa atgaacagca acatattttt ggttttaggc
     2101 tgaacttatt atcagaaaat gaatattcct tgagatttat cttagggccc ttagaattgt
     2161 taatagatct ccaggctttt aattacattg aagtaatttt gaaacacaaa tagaaattaa
     2221 gctactatac aatatgatgg tttacactgt acttttaact tttaaaattg cttaattaac
     2281 atatattgtt tgaatcatat aaagtttttt ttaagttttt gttcatttac caaagtcaac
     2341 agaatgtctg atattatttt atgtatacag taatttaaaa tgtaaatttt ttttctcaaa
     2401 aaaactcata cattaatggt agaaacagtg gtagtttttg tagcagtagt cactgttatt
     2461 gtcattattg ttttaaacat ggtgcagctc ctgatagcag atggtacatg ttaataacag
     2521 tagtaaaaat aatatcttga ggctctgtaa cttatcgcat attgttatta tgtctgtggt
     2581 gtcaaaatga gtattataaa agattaatat aaaatggttt agcagactga agtatatatt
     2641 aggtagaagt taatatttgt ttcttgcgaa aggaccacat gttaaagtaa tgccaaacag
     2701 ccagtaatca tgaatacttt aaatagaatt tattatttca aaatgtctta aaagagaaaa
     2761 gataaacttt ctattgaaaa acagcaaaat tagattttct cctggagaaa ataacttgat
     2821 aggatttaat ggaaatctgt tcaattaaaa aaatgtagtt tataaaaagt tactatgcaa
     2881 aaatagaaca atgaatttaa attatactgt atgtggaaga taggttcatt tatcttctaa
     2941 gatgtactaa atataaactg cacacactcc aactgttatc ttgcttttat atatgaaaat
     3001 aggaaatact gactttgttt ttgttaagtt attaaaggtg aaattgatag ttctgcatca
     3061 gcctatttat gaaagtaatg ttattcccaa gaatatgttg ttagcattga caatgcattt
     3121 ttagactttt tacattcttt atctgatatt atttattaca ttgatataga aatatgtgat
     3181 tcatcagttt taggatttca tatagtataa tttcacctgc tttgcaggtt gattcagttg
     3241 attaactaaa tgagaatatc taccttctca tttaacgtgc cccagctcta ttttacctta
     3301 cactgaatgt tctcaatatt atttgctatc taaaagaatg gaaaaaatgc aacttacttt
     3361 tatctttaat tataaactaa attatcttgc atatatggaa aaattgctat ttagaacagt
     3421 cctataaata gatattaaaa actgaattag atcattaaga ttctttataa ttctgccatt
     3481 ctcccaagga atactacata gtaaccttta ttctttattg cttatcagag tgaatggata
     3541 ctcatctgct tataagactg cagcataata ttaaaatgca aataaataaa atattctgat
     3601 caattaaaat ggaaaagagt agtaaattat ggtgattctc cacatattat cactcttgaa
     3661 ctttatcatc tataaaatgg gaggtaaaaa tatctcactg gactgttgtt tacatcaatt
     3721 ttaaaaattt taagtgcttt gaaaatagta atgtactaaa tacatgtatg ctattctcag
     3781 tatttccttc tacaaactat tccttggaaa gatgaagcta tacatgaaat tttagtatca
     3841 tactctttac agaagacttt atgatgaaag gtttatggta attctcagaa tcatttctta
     3901 ttatgaattt catttaagtt ccagtttatt gttcttatgt aaagtgacct gtcttacatt
     3961 cttatgttat cttaaaataa atatacttgc tgttgaatca agaaa
//
LOCUS       XM_032618591            3899 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial calcium uptake family
            member 3 (MICU3), transcript variant X3, mRNA.
ACCESSION   XM_032618591
VERSION     XM_032618591.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3899
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3899
                     /gene="MICU3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746855"
     CDS             8..1567
                     /gene="MICU3"
                     /codon_start=1
                     /product="calcium uptake protein 3, mitochondrial isoform
                     X2"
                     /protein_id="XP_032474482.1"
                     /db_xref="GeneID:116746855"
                     /translation="MAALRRLLRPPPRLPPPPSPPHPFPGPCGRPAGIAPGPPGRPFC
                     REEEEGAVAEAAWRRRRRWGELSIAAAAGGGLVGLVCYQLYGDPRADSARAPAPWLPS
                     KSAAAEPEEPPRGRGLLPIPVAAAKETVAVGRTDIEDLDLYATSRERRFRLFASVECE
                     GQLFMTPYDFILAVTTDEPKFAKTWKSLSKQELNQMLSETPPVWKGSSKLFRSLKERG
                     VISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVLQEIFRKKNEKRETK
                     GDEEKRAMLVLKTDAEELVSRSYWDTLRRNTSQALFSDLAERADDITNLVTDTTLLVH
                     FFGKKGKAELNFEDFYRFMDNLQTEVLEIEFLSYSNGMNTISEEDFAHILLRYTNVEN
                     TSVFLENVRYSIPEEKGITFDEFRSFFQFLNNLEDFAIALNMYNFASRSIGQDEFKRA
                     VYVATGLRLSPHLVNTVFKIFDVDKDDQLSYKEFIGIMKDRLHRGFRGYKTVQNYPTF
                     KSCLKKELHSR"
     misc_feature    719..1483
                     /gene="MICU3"
                     /note="EF-hand, calcium binding motif, found in calcium
                     uptake protein 3, mitochondrial (MICU3) and similar
                     proteins; Region: EFh_MICU3; cd16175"
                     /db_xref="CDD:320083"
     misc_feature    719..808
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320083"
     misc_feature    725..1072
                     /gene="MICU3"
                     /note="centrin; Provisional; Region: PTZ00183"
                     /db_xref="CDD:185503"
     misc_feature    order(746..748,752..754,758..760,779..781,1421..1423,
                     1427..1429,1433..1435,1454..1456)
                     /gene="MICU3"
                     /note="Ca binding site [ion binding]; other site"
                     /db_xref="CDD:320083"
     misc_feature    995..1087
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320083"
     misc_feature    1283..1372
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320083"
     misc_feature    1394..1483
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320083"
ORIGIN      
        1 tcccgctatg gctgcgctgc ggaggcttct gcgtccgccg cctcggcttc cgcctccgcc
       61 ctcgcctccc catcccttcc ctgggccgtg cgggcggcct gcgggcatag ccccgggccc
      121 tcccggccgg cccttctgcc gggaggagga ggagggggct gtggctgagg cggcttggag
      181 gcggcggcgg cgctgggggg agctgagcat agcggctgcg gccggcgggg gtctggtcgg
      241 cctggtgtgc taccagctgt atggggaccc cagggccgac tccgcgcggg cgccggcccc
      301 ctggctcccc tccaagagcg cggccgcaga gccggaggaa ccgccccgcg gccgggggct
      361 gcttcccatc ccggtcgccg ctgccaagga gacggttgct gttggcagaa cagacattga
      421 agacctagat ctctatgcaa catctcggga aaggcgattt cgtttgtttg cttctgtaga
      481 atgtgaaggg cagttattca tgactccata tgattttatt ttggctgtta caacagatga
      541 gcccaaattt gctaaaacat ggaagtcact ttccaagcag gaattaaatc aaatgttatc
      601 agaaacacca ccagtttgga aaggatcatc aaagctattt cgaagtctta aagaaagagg
      661 tgtgatttct tacacagaat atctttttct tttatgtatt ttaacaaagc cacatgcagg
      721 ttttagaata gctttcaaca tgtttgacac cgatggcaat gagatggtag ataaaaagga
      781 gtttttggtg cttcaagaaa tattcaggaa aaaaaatgaa aagagagaaa ctaaaggaga
      841 tgaagaaaag cgtgcaatgc tggtacttaa aacagatgct gaggaacttg tctccagaag
      901 ctattgggat acactgagac gtaatacaag ccaagcactc ttttcagacc tcgcagagcg
      961 tgctgatgac attacaaact tagtaacaga tactacactt cttgtacact tttttggaaa
     1021 gaaaggaaaa gctgagctca actttgaaga tttttataga ttcatggata acctccaaac
     1081 agaagttcta gaaatagaat tcctttccta ctctaatggg atgaatacta tcagtgaaga
     1141 agattttgct catattcttt tacgatacac aaatgtggaa aatacatcag tatttttgga
     1201 aaatgtgcgt tatagtatac ctgaagaaaa gggcattaca tttgatgaat tcaggtcatt
     1261 tttccagttt ttgaacaacc tagaagactt tgcaatagcc ttgaatatgt ataattttgc
     1321 aagtcgctct atagggcaag atgaatttaa acgtgccgtc tatgtagcca ctggcctcag
     1381 actttcacca catttagtga acacagtctt taagattttt gatgttgaca aagatgatca
     1441 attaagctat aaagaattca ttggaattat gaaagacaga ctccatagag gattccgggg
     1501 ttataaaaca gttcagaatt atcccacttt caaatcctgt ctgaagaagg aacttcatag
     1561 cagataagta cttctaaagc aaagtttaaa ggattattat ctacttgaaa gtgcaagaag
     1621 caaaaacttc agagggcgga agcaggtctg agatcagaac ttgtgtaaat gaaggaaaag
     1681 gtgaaatgct aattataatt ttttctttaa ctgaattttt gaatataaga tgcatctgct
     1741 tactaattac taatgttacg tgttatcatg catcttctta ctactaacgt tacgtgttat
     1801 catgttgagc ttttgacttg atttactgaa ctctgcactt tttcattccc tttggattct
     1861 tccagtgact gtataaaaat gtattttaat tttttaaaag attcattaga aatttgtctc
     1921 atttcaaaat aatgtatgac tcgtggaatc tagatcactt aaaaatgaac agcaacatat
     1981 ttttggtttt aggctgaact tattatcaga aaatgaatat tccttgagat ttatcttagg
     2041 gcccttagaa ttgttaatag atctccaggc ttttaattac attgaagtaa ttttgaaaca
     2101 caaatagaaa ttaagctact atacaatatg atggtttaca ctgtactttt aacttttaaa
     2161 attgcttaat taacatatat tgtttgaatc atataaagtt ttttttaagt ttttgttcat
     2221 ttaccaaagt caacagaatg tctgatatta ttttatgtat acagtaattt aaaatgtaaa
     2281 ttttttttct caaaaaaact catacattaa tggtagaaac agtggtagtt tttgtagcag
     2341 tagtcactgt tattgtcatt attgttttaa acatggtgca gctcctgata gcagatggta
     2401 catgttaata acagtagtaa aaataatatc ttgaggctct gtaacttatc gcatattgtt
     2461 attatgtctg tggtgtcaaa atgagtatta taaaagatta atataaaatg gtttagcaga
     2521 ctgaagtata tattaggtag aagttaatat ttgtttcttg cgaaaggacc acatgttaaa
     2581 gtaatgccaa acagccagta atcatgaata ctttaaatag aatttattat ttcaaaatgt
     2641 cttaaaagag aaaagataaa ctttctattg aaaaacagca aaattagatt ttctcctgga
     2701 gaaaataact tgataggatt taatggaaat ctgttcaatt aaaaaaatgt agtttataaa
     2761 aagttactat gcaaaaatag aacaatgaat ttaaattata ctgtatgtgg aagataggtt
     2821 catttatctt ctaagatgta ctaaatataa actgcacaca ctccaactgt tatcttgctt
     2881 ttatatatga aaataggaaa tactgacttt gtttttgtta agttattaaa ggtgaaattg
     2941 atagttctgc atcagcctat ttatgaaagt aatgttattc ccaagaatat gttgttagca
     3001 ttgacaatgc atttttagac tttttacatt ctttatctga tattatttat tacattgata
     3061 tagaaatatg tgattcatca gttttaggat ttcatatagt ataatttcac ctgctttgca
     3121 ggttgattca gttgattaac taaatgagaa tatctacctt ctcatttaac gtgccccagc
     3181 tctattttac cttacactga atgttctcaa tattatttgc tatctaaaag aatggaaaaa
     3241 atgcaactta cttttatctt taattataaa ctaaattatc ttgcatatat ggaaaaattg
     3301 ctatttagaa cagtcctata aatagatatt aaaaactgaa ttagatcatt aagattcttt
     3361 ataattctgc cattctccca aggaatacta catagtaacc tttattcttt attgcttatc
     3421 agagtgaatg gatactcatc tgcttataag actgcagcat aatattaaaa tgcaaataaa
     3481 taaaatattc tgatcaatta aaatggaaaa gagtagtaaa ttatggtgat tctccacata
     3541 ttatcactct tgaactttat catctataaa atgggaggta aaaatatctc actggactgt
     3601 tgtttacatc aattttaaaa attttaagtg ctttgaaaat agtaatgtac taaatacatg
     3661 tatgctattc tcagtatttc cttctacaaa ctattccttg gaaagatgaa gctatacatg
     3721 aaattttagt atcatactct ttacagaaga ctttatgatg aaaggtttat ggtaattctc
     3781 agaatcattt cttattatga atttcattta agttccagtt tattgttctt atgtaaagtg
     3841 acctgtctta cattcttatg ttatcttaaa ataaatatac ttgctgttga atcaagaaa
//
LOCUS       XM_032618592            1422 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial calcium uptake family
            member 3 (MICU3), transcript variant X4, mRNA.
ACCESSION   XM_032618592
VERSION     XM_032618592.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1422
                     /gene="MICU3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746855"
     CDS             8..1297
                     /gene="MICU3"
                     /codon_start=1
                     /product="calcium uptake protein 3, mitochondrial isoform
                     X3"
                     /protein_id="XP_032474483.1"
                     /db_xref="GeneID:116746855"
                     /translation="MAALRRLLRPPPRLPPPPSPPHPFPGPCGRPAGIAPGPPGRPFC
                     REEEEGAVAEAAWRRRRRWGELSIAAAAGGGLVGLVCYQLYGDPRADSARAPAPWLPS
                     KSAAAEPEEPPRGRGLLPIPVAAAKETVAVGRTDIEDLDLYATSRERRFRLFASVECE
                     GQLFMTPYDFILAVTTDEPKFAKTWKSLSKQELNQMLSETPPVWKGSSKLFRSLKERG
                     VISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVLQEIFRKKNEKRETK
                     GDEEKRAMLRLQLYGYHSPPNSVLKTDAEELVSRSYWDTLRRNTSQALFSDLAERADD
                     ITNLVTDTTLLVHFFGKKGKAELNFEDFYRFMDNLQTEVLEIEFLSYSNGMNTISEED
                     FAHILLRYTNVENTSVFLENVRYSIPEEKMNLNVPSM"
     misc_feature    719..>1219
                     /gene="MICU3"
                     /note="EF-hand, calcium binding motif, found in
                     mitochondrial calcium uptake proteins MICU1, MICU2, MICU3,
                     and similar proteins; Region: EFh_MICU; cl28896"
                     /db_xref="CDD:333716"
     misc_feature    719..808
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320080"
     misc_feature    1034..1126
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320080"
     misc_feature    1127..1210
                     /gene="MICU3"
                     /note="EF-hand motif [structural motif]; Region: EF-hand
                     motif"
                     /db_xref="CDD:320080"
ORIGIN      
        1 tcccgctatg gctgcgctgc ggaggcttct gcgtccgccg cctcggcttc cgcctccgcc
       61 ctcgcctccc catcccttcc ctgggccgtg cgggcggcct gcgggcatag ccccgggccc
      121 tcccggccgg cccttctgcc gggaggagga ggagggggct gtggctgagg cggcttggag
      181 gcggcggcgg cgctgggggg agctgagcat agcggctgcg gccggcgggg gtctggtcgg
      241 cctggtgtgc taccagctgt atggggaccc cagggccgac tccgcgcggg cgccggcccc
      301 ctggctcccc tccaagagcg cggccgcaga gccggaggaa ccgccccgcg gccgggggct
      361 gcttcccatc ccggtcgccg ctgccaagga gacggttgct gttggcagaa cagacattga
      421 agacctagat ctctatgcaa catctcggga aaggcgattt cgtttgtttg cttctgtaga
      481 atgtgaaggg cagttattca tgactccata tgattttatt ttggctgtta caacagatga
      541 gcccaaattt gctaaaacat ggaagtcact ttccaagcag gaattaaatc aaatgttatc
      601 agaaacacca ccagtttgga aaggatcatc aaagctattt cgaagtctta aagaaagagg
      661 tgtgatttct tacacagaat atctttttct tttatgtatt ttaacaaagc cacatgcagg
      721 ttttagaata gctttcaaca tgtttgacac cgatggcaat gagatggtag ataaaaagga
      781 gtttttggtg cttcaagaaa tattcaggaa aaaaaatgaa aagagagaaa ctaaaggaga
      841 tgaagaaaag cgtgcaatgc tgcgtcttca actttatgga taccattctc ctcctaatag
      901 tgtacttaaa acagatgctg aggaacttgt ctccagaagc tattgggata cactgagacg
      961 taatacaagc caagcactct tttcagacct cgcagagcgt gctgatgaca ttacaaactt
     1021 agtaacagat actacacttc ttgtacactt ttttggaaag aaaggaaaag ctgagctcaa
     1081 ctttgaagat ttttatagat tcatggataa cctccaaaca gaagttctag aaatagaatt
     1141 cctttcctac tctaatggga tgaatactat cagtgaagaa gattttgctc atattctttt
     1201 acgatacaca aatgtggaaa atacatcagt atttttggaa aatgtgcgtt atagtatacc
     1261 tgaagaaaag atgaatttaa acgtgccgtc tatgtagcca ctggcctcag actttcacca
     1321 catttagtga acacagtctt taagattttt gatgttgaca aagatgatca attaagctat
     1381 aaagaattca ttggaattat gaaagacaga ctccatagag ga
//
LOCUS       XM_032618594            1762 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor suppressor candidate 3 (TUSC3),
            transcript variant X1, mRNA.
ACCESSION   XM_032618594
VERSION     XM_032618594.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1762
                     /gene="TUSC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 18 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746856"
     CDS             200..1246
                     /gene="TUSC3"
                     /codon_start=1
                     /product="tumor suppressor candidate 3 isoform X1"
                     /protein_id="XP_032474485.1"
                     /db_xref="GeneID:116746856"
                     /translation="MGARGAPSRRRQAGRRPRYLPTGSFPFLLLLLLLCIQLGGGQKK
                     KENLLAEKVEQLMEWSSRRSIFRMNGDKFRKFIKTPPRNYSMIVMFTALQPQRQCSVC
                     RQANEEYQILANSWRYSSAFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRP
                     KRADTFDLQRIGFAAEQLAKWIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLR
                     RNNLEFIYNKTGWAMVSLCIVFAMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQ
                     FVAESHIILLLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFR
                     SKYHGYPYSDLDFE"
     misc_feature    359..1225
                     /gene="TUSC3"
                     /note="OST3 / OST6 family, transporter family; Region:
                     OST3_OST6; pfam04756"
                     /db_xref="CDD:461420"
ORIGIN      
        1 ctcctcttcc aatgaaccgg atgctccgtc agttagctcc tccgcgtcct ccggtgcttc
       61 ccggctccct ggcaaggccg caggcatcca cgcggggacg gtcagggggc tcccggcggc
      121 tggcctggca ggtgtagggc gccggtagga gctgggcgca cacggttacc gagcgtggag
      181 gagacacgtc cctgcggcga tgggtgccag gggcgctcct tcacgccgga ggcaggcggg
      241 gcggcgaccg cggtatctgc ccaccgggag ctttcccttt ctcctcctct tgctgcttct
      301 ctgcatccag ctcggtggag gacagaagaa aaaggagaat cttttagctg agaaagtaga
      361 acagttgatg gaatggagct ccaggcgctc aatcttccga atgaatggtg acaaattccg
      421 aaaatttata aagacaccac ctcgaaacta ttctatgatt gttatgttca ctgctcttca
      481 acctcagcgg cagtgttctg tgtgcaggca agctaacgaa gaatatcaaa tactggctaa
      541 ctcgtggcgc tattcctctg ctttttgtaa caaactcttc ttcagtatgg tggactacga
      601 tgagggaaca gatgtttttc agcagctcaa catgaactct gctcctacat ttatgcattt
      661 tcctccaaaa ggcagaccca agagagctga tacttttgac cttcaaagaa ttggatttgc
      721 agctgagcaa ctagcaaagt ggattgctga cagaacggat gttcatattc gtgtcttcag
      781 accacccaac tactctggca ccattgcttt ggccttgtta gtgtcacttg tgggtggttt
      841 gctgtattta agaaggaaca acttggagtt catctataac aagactggtt gggccatggt
      901 atctctgtgt atagtctttg ctatgacttc tggccagatg tggaatcata tccgtggacc
      961 accatatgct cataaaaacc cgcacaatgg acaggtgagc tacatccatg ggagcagcca
     1021 ggctcaattc gtggcagagt cacacattat tctgctacta aatgctgcta tcaccatggg
     1081 gatggttctt ctaaatgaag cggcaacatc caaaggcgat gttggaaaaa gacggatcat
     1141 ttgtctagtg ggattaggcc tggtggtctt cttcttcagt tttctacttt caatatttcg
     1201 ttccaagtac cacggctacc cttacagtga tctggacttt gagtgagaag atgtgatttg
     1261 gaccatggca ctttaaaact gtaaccgcag ctttttaatt aaatgaagcc gagtgggatt
     1321 tgcataaagt gaatgtttac catgaagaca aagtgttcct gacatactag ttcaaattct
     1381 tgagttcatt tccttgccga ttgtgataat ccagctgttt cctgtacaat ttttttaaac
     1441 gtgagttttc ctagtaaact taattcatag acatggatgg ttaaatttaa tgtggaaaga
     1501 acaaaggcat catcgaagtg tttttcaagc acattatatt cactgtatgc aagaggttga
     1561 aataaatgac aatgcagtta tgaattcatg cttttaaact gttcactcac taggaaagaa
     1621 aaccacaatg ttagtaaagg aaaactatga aatgtatctt aattcttggg attgcacaga
     1681 cacagatgta tgcatgaaaa tatgtactga aaaattatac tttctgcagt ttcagtataa
     1741 aggacatgta tggttacaaa ta
//
LOCUS       XM_032618595            1786 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor suppressor candidate 3 (TUSC3),
            transcript variant X2, mRNA.
ACCESSION   XM_032618595
VERSION     XM_032618595.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1786
                     /gene="TUSC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 7 long SRA reads, 14
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746856"
     CDS             287..1330
                     /gene="TUSC3"
                     /codon_start=1
                     /product="tumor suppressor candidate 3 isoform X2"
                     /protein_id="XP_032474486.1"
                     /db_xref="GeneID:116746856"
                     /translation="MGARGAPSRRRQAGRRPRYLPTGSFPFLLLLLLLCIQLGGGQKK
                     KENLLAEKVEQLMEWSSRRSIFRMNGDKFRKFIKTPPRNYSMIVMFTALQPQRQCSVC
                     RQANEEYQILANSWRYSSAFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRP
                     KRADTFDLQRIGFAAEQLAKWIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLR
                     RNNLEFIYNKTGWAMVSLCIVFAMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQ
                     FVAESHIILLLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFR
                     SKYHGYPYSFLIK"
     misc_feature    446..1312
                     /gene="TUSC3"
                     /note="OST3 / OST6 family, transporter family; Region:
                     OST3_OST6; pfam04756"
                     /db_xref="CDD:461420"
ORIGIN      
        1 tccggctgaa ggcgcagcgc ggcgtgcacg gaagctccgg ctccctcgcc acgcccactt
       61 cctgccccat cccgggcttt tccaggtctc ctcttccaat gaaccggatg ctccgtcagt
      121 tagctcctcc gcgtcctccg gtgcttcccg gctccctggc aaggccgcag gcatccacgc
      181 ggggacggtc agggggctcc cggcggctgg cctggcaggt gtagggcgcc ggtaggagct
      241 gggcgcacac ggttaccgag cgtggaggag acacgtccct gcggcgatgg gtgccagggg
      301 cgctccttca cgccggaggc aggcggggcg gcgaccgcgg tatctgccca ccgggagctt
      361 tccctttctc ctcctcttgc tgcttctctg catccagctc ggtggaggac agaagaaaaa
      421 ggagaatctt ttagctgaga aagtagaaca gttgatggaa tggagctcca ggcgctcaat
      481 cttccgaatg aatggtgaca aattccgaaa atttataaag acaccacctc gaaactattc
      541 tatgattgtt atgttcactg ctcttcaacc tcagcggcag tgttctgtgt gcaggcaagc
      601 taacgaagaa tatcaaatac tggctaactc gtggcgctat tcctctgctt tttgtaacaa
      661 actcttcttc agtatggtgg actacgatga gggaacagat gtttttcagc agctcaacat
      721 gaactctgct cctacattta tgcattttcc tccaaaaggc agacccaaga gagctgatac
      781 ttttgacctt caaagaattg gatttgcagc tgagcaacta gcaaagtgga ttgctgacag
      841 aacggatgtt catattcgtg tcttcagacc acccaactac tctggcacca ttgctttggc
      901 cttgttagtg tcacttgtgg gtggtttgct gtatttaaga aggaacaact tggagttcat
      961 ctataacaag actggttggg ccatggtatc tctgtgtata gtctttgcta tgacttctgg
     1021 ccagatgtgg aatcatatcc gtggaccacc atatgctcat aaaaacccgc acaatggaca
     1081 ggtgagctac atccatggga gcagccaggc tcaattcgtg gcagagtcac acattattct
     1141 gctactaaat gctgctatca ccatggggat ggttcttcta aatgaagcgg caacatccaa
     1201 aggcgatgtt ggaaaaagac ggatcatttg tctagtggga ttaggcctgg tggtcttctt
     1261 cttcagtttt ctactttcaa tatttcgttc caagtaccac ggctaccctt acagcttttt
     1321 aattaaatga agccgagtgg gatttgcata aagtgaatgt ttaccatgaa gacaaagtgt
     1381 tcctgacata ctagttcaaa ttcttgagtt catttccttg ccgattgtga taatccagct
     1441 gtttcctgta caattttttt aaacgtgagt tttcctagta aacttaattc atagacatgg
     1501 atggttaaat ttaatgtgga aagaacaaag gcatcatcga agtgtttttc aagcacatta
     1561 tattcactgt atgcaagagg ttgaaataaa tgacaatgca gttatgaatt catgctttta
     1621 aactgttcac tcactaggaa agaaaaccac aatgttagta aaggaaaact atgaaatgta
     1681 tcttaattct tgggattgca cagacacaga tgtatgcatg aaaatatgta ctgaaaaatt
     1741 atactttctg cagtttcagt ataaaggaca tgtatggtta caaata
//
LOCUS       XM_032618596            1440 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tumor suppressor candidate 3 (TUSC3),
            transcript variant X3, mRNA.
ACCESSION   XM_032618596
VERSION     XM_032618596.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1440
                     /gene="TUSC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746856"
     CDS             4..924
                     /gene="TUSC3"
                     /codon_start=1
                     /product="tumor suppressor candidate 3 isoform X3"
                     /protein_id="XP_032474487.1"
                     /db_xref="GeneID:116746856"
                     /translation="MRKENLLAEKVEQLMEWSSRRSIFRMNGDKFRKFIKTPPRNYSM
                     IVMFTALQPQRQCSVCRQANEEYQILANSWRYSSAFCNKLFFSMVDYDEGTDVFQQLN
                     MNSAPTFMHFPPKGRPKRADTFDLQRIGFAAEQLAKWIADRTDVHIRVFRPPNYSGTI
                     ALALLVSLVGGLLYLRRNNLEFIYNKTGWAMVSLCIVFAMTSGQMWNHIRGPPYAHKN
                     PHNGQVSYIHGSSQAQFVAESHIILLLNAAITMGMVLLNEAATSKGDVGKRRIICLVG
                     LGLVVFFFSFLLSIFRSKYHGYPYSDLDFE"
     misc_feature    37..903
                     /gene="TUSC3"
                     /note="OST3 / OST6 family, transporter family; Region:
                     OST3_OST6; pfam04756"
                     /db_xref="CDD:461420"
ORIGIN      
        1 cagatgagaa aggagaatct tttagctgag aaagtagaac agttgatgga atggagctcc
       61 aggcgctcaa tcttccgaat gaatggtgac aaattccgaa aatttataaa gacaccacct
      121 cgaaactatt ctatgattgt tatgttcact gctcttcaac ctcagcggca gtgttctgtg
      181 tgcaggcaag ctaacgaaga atatcaaata ctggctaact cgtggcgcta ttcctctgct
      241 ttttgtaaca aactcttctt cagtatggtg gactacgatg agggaacaga tgtttttcag
      301 cagctcaaca tgaactctgc tcctacattt atgcattttc ctccaaaagg cagacccaag
      361 agagctgata cttttgacct tcaaagaatt ggatttgcag ctgagcaact agcaaagtgg
      421 attgctgaca gaacggatgt tcatattcgt gtcttcagac cacccaacta ctctggcacc
      481 attgctttgg ccttgttagt gtcacttgtg ggtggtttgc tgtatttaag aaggaacaac
      541 ttggagttca tctataacaa gactggttgg gccatggtat ctctgtgtat agtctttgct
      601 atgacttctg gccagatgtg gaatcatatc cgtggaccac catatgctca taaaaacccg
      661 cacaatggac aggtgagcta catccatggg agcagccagg ctcaattcgt ggcagagtca
      721 cacattattc tgctactaaa tgctgctatc accatgggga tggttcttct aaatgaagcg
      781 gcaacatcca aaggcgatgt tggaaaaaga cggatcattt gtctagtggg attaggcctg
      841 gtggtcttct tcttcagttt tctactttca atatttcgtt ccaagtacca cggctaccct
      901 tacagtgatc tggactttga gtgagaagat gtgatttgga ccatggcact ttaaaactgt
      961 aaccgcagct ttttaattaa atgaagccga gtgggatttg cataaagtga atgtttacca
     1021 tgaagacaaa gtgttcctga catactagtt caaattcttg agttcatttc cttgccgatt
     1081 gtgataatcc agctgtttcc tgtacaattt ttttaaacgt gagttttcct agtaaactta
     1141 attcatagac atggatggtt aaatttaatg tggaaagaac aaaggcatca tcgaagtgtt
     1201 tttcaagcac attatattca ctgtatgcaa gaggttgaaa taaatgacaa tgcagttatg
     1261 aattcatgct tttaaactgt tcactcacta ggaaagaaaa ccacaatgtt agtaaaggaa
     1321 aactatgaaa tgtatcttaa ttcttgggat tgcacagaca cagatgtatg catgaaaata
     1381 tgtactgaaa aattatactt tctgcagttt cagtataaag gacatgtatg gttacaaata
//
LOCUS       XM_032618597            1537 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glutamate rich 1 (ERICH1), mRNA.
ACCESSION   XM_032618597
VERSION     XM_032618597.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1537
                     /gene="ERICH1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746857"
     CDS             93..1142
                     /gene="ERICH1"
                     /codon_start=1
                     /product="glutamate-rich protein 1"
                     /protein_id="XP_032474488.1"
                     /db_xref="GeneID:116746857"
                     /translation="MAALRRHVFVGKVLKKLYPEVPRGQEKRAPVSPACRNPPEKAAP
                     ERVKGRGIPPVTGGDTRVQPARRLYTVGLPPEGWVPPPPEAPSCSSPESSSSGEDIGD
                     QDLQAQPKRRRIRKHNSKKKFKNPSNIPVEQAELEKQQSILQEKLQPHSHSHTDGPTI
                     SKNKKRKLKKKQQIKRKKAAGLLTGVSGVNFMYQPEETSSEQGDVRVSDGEDGADGEG
                     GGPDAEEEGATDAGKEDVKSTNEKADGILNFLKSTQEIYFYDGVSKDSDSAVFMETSG
                     ELFKYLETHSMPSSDVFILDHMKTLLLLQDTERLKSALEVFPEHCRMPPDYARVISAF
                     FNYWITHILPEKNNE"
ORIGIN      
        1 ggacgggcct acaaggacgg agtccggaag tgcagtcgcg ctgctcgcgc ctgggctggg
       61 gtcgcagggg tcgccggggc agcgaggccg gcatggcggc gctgcggagg cacgtgtttg
      121 ttggaaaagt gctgaagaaa ctgtatcctg aggttccacg tggccaagag aagagggccc
      181 cggtgagtcc agcctgcaga aacccacctg agaaagcggc tcctgagaga gtgaagggca
      241 ggggcatccc ccccgtgaca ggtggtgaca ctcgtgtcca gcctgcgcga cggctctaca
      301 ccgtgggcct gcctcctgag gggtgggtcc cccctccgcc ggaggccccc agctgctcga
      361 gtcctgagag ctcctccagc ggcgaagaca taggagatca ggatcttcag gctcaaccaa
      421 agagaagaag aattagaaag cataattcaa agaaaaaatt taaaaatccc agtaacattc
      481 ctgtagaaca agcagaatta gagaaacagc agagtatttt gcaagaaaaa ttgcagccac
      541 acagccacag ccacacagat ggccccacaa taagcaaaaa taaaaaaagg aaactgaaaa
      601 agaaacagca aattaaaagg aagaaagcag ctggcttact aacaggagtc tctggcgtca
      661 acttcatgta ccagcctgag gagaccagca gtgagcaggg cgacgtgaga gtgagtgatg
      721 gagaggacgg cgcagacggg gagggaggag gcccggatgc cgaggaggaa ggagccacag
      781 acgccgggaa ggaagacgtt aaaagtacca atgaaaaggc agatggtatc ctgaactttc
      841 tgaagtcaac acaagaaatt tatttttatg atggtgtctc caaggattcg gactcggctg
      901 tcttcatgga gaccagtgga gagctcttta aatatcttga aactcacagc atgccctcct
      961 cagatgtgtt cattctggat cacatgaaaa cgctgttact tttgcaagat actgaaagat
     1021 tgaagagtgc cctggaagtg ttcccagaac attgcaggat gccacccgac tatgcccgag
     1081 taatctcagc tttctttaat tactggatca cacatatcct tcctgagaaa aacaatgaat
     1141 aaaatcagta catctattta agaagagcta atatttgaca agaaaatagg aaagacagat
     1201 atgaaatggt ctgggactta atttctatac acagagaaga tgaaattctc taagttttct
     1261 ttgtagccca aaccctggga actttgagga catttcagtt catctgtttg tacataatag
     1321 gtagatgtaa tctgagactt ttaagtgaga aattgggata aaattgaaaa tttctttgaa
     1381 attgtgtgtg tcttaaattt aaaaatggac attctgttaa attgaataaa ctgtatagtt
     1441 tgaagctgta tatatatttt tataaagttt taaatcactt tgtgtctgaa agtttgtttt
     1501 aagaatgtcg tatggatatt aaaacgttca tggttaa
//
LOCUS       XM_032618598            1537 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus macrophage scavenger receptor 1 (MSR1),
            transcript variant X1, mRNA.
ACCESSION   XM_032618598
VERSION     XM_032618598.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1537
                     /gene="MSR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746858"
     CDS             89..1453
                     /gene="MSR1"
                     /codon_start=1
                     /product="macrophage scavenger receptor types I and II
                     isoform X1"
                     /protein_id="XP_032474489.1"
                     /db_xref="GeneID:116746858"
                     /translation="MELWESFPNQQKDTDSCTESVKFDAHSMTALLPPNPKNGPTLQE
                     KMKSFRAALIALYLLVFVVLVPIIGIVAAQLLKWEMKNCTVGSVNANDISPSLAGKGN
                     DSEDAMRFREVVMEHMSNVEKRIQYLSDNEANLIDAKNFQNFSVTTDQRFNDVLFQLS
                     SLLSFIQGHGNVIGEVSKSLISLNTTLLDLQLSIATLNAKVQENAFKQQEEMSKLEER
                     VYNTSAEIKSLEEKQVHLEQEIKGEVKLLSNITNDLRLKDWEHSQTLKNITLIQGPPG
                     PPGEKGDRGPTGEVGPQGIPGPVGPPGLKGDRGSIGFPGSRGFPGSAGKTGRPGNSGQ
                     KGQKGEKGSGSVLTPSKTVRLVGGSGPHEGRVEIFHDGQWGTVCDDRWELRGGQVICR
                     SLGYQGARNVHKGAYFGQGTGPIWLNEVFCFGRESSIEECKIRQWGVRVCSHAEDAGV
                     TCNT"
     misc_feature    452..595
                     /gene="MSR1"
                     /note="Macrophage scavenger receptor; Region: Macscav_rec;
                     pfam03523"
                     /db_xref="CDD:460956"
     misc_feature    <605..>811
                     /gene="MSR1"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    920..1108
                     /gene="MSR1"
                     /note="Collagen triple helix repeat (20 copies); Region:
                     Collagen; pfam01391"
                     /db_xref="CDD:460189"
     misc_feature    1145..1447
                     /gene="MSR1"
                     /note="Scavenger receptor Cys-rich; Region: SR;
                     smart00202"
                     /db_xref="CDD:214555"
ORIGIN      
        1 ctgaaatatt atgtgataaa ggttttaggt ttcaattgtt aagagaggga agtggataaa
       61 tcagtgctgc gtctttagga cacgaagtat ggaactgtgg gagagctttc ccaatcaaca
      121 gaaggacact gatagctgta cagaatctgt gaagtttgat gctcactcaa tgaccgcttt
      181 gcttcctcca aatcctaaaa atggcccaac tcttcaagag aaaatgaagt ctttcagagc
      241 tgcactgatt gccctttatc tccttgtgtt tgtagttctt gtacctatca tcggaatagt
      301 ggcagctcaa ctcctgaaat gggaaatgaa gaattgcaca gttggttcag ttaatgcaaa
      361 tgatatatct ccaagtctcg caggaaaagg aaatgacagt gaagatgcaa tgagatttcg
      421 agaagtcgtt atggaacaca tgagcaacgt ggagaagaga atccaatatc tttcagataa
      481 tgaagccaat ctcatagatg ccaagaattt ccaaaatttc agtgtaacaa ccgatcaaag
      541 gtttaatgac gttcttttcc agctaagttc cttactttcc ttcatccagg gacatggaaa
      601 tgtaataggt gaagtctcca agtcattaat aagtctgaac accacactgc ttgatttgca
      661 gctcagtatt gcaacactga atgccaaagt ccaagagaat gcatttaaac aacaagagga
      721 gatgagtaaa ttagaggagc gtgtgtacaa tacatcagca gaaattaagt ctctggaaga
      781 aaaacaagtg catttggaac aggaaataaa aggagaagtg aaactgttga gtaacatcac
      841 taatgatctc aggctgaagg attgggaaca ttctcagaca ctgaaaaata tcactttaat
      901 tcaaggtcct cctggacctc caggtgaaaa aggagataga ggtcccactg gagaagttgg
      961 tccacaaggc attccaggtc cagtaggtcc tccaggtctt aaaggtgatc gaggatccat
     1021 tggctttcct ggaagtcgag gattcccagg atcagcgggg aagaccggga ggccaggaaa
     1081 ttctggacaa aaaggccaga agggggaaaa agggagtgga agcgtgctaa caccgtctaa
     1141 gacagttcga ctggttggtg gtagcggccc tcacgaaggc agagtggaaa ttttccatga
     1201 tggccagtgg ggtacagttt gtgacgaccg ctgggaattg cgtggaggac aggtcatctg
     1261 taggagtttg ggataccagg gtgctcgaaa tgtgcataag ggagcttatt ttggacaagg
     1321 tactggtcca atatggctga atgaagtatt ttgttttggg agagaatcat ctattgaaga
     1381 gtgtaaaatt agacaatggg gtgtgagagt ctgttcacat gctgaagatg ccggggtcac
     1441 ttgcaataca taatgcacca tattttcatt cacatttatg aaattgctgc aaaatgattt
     1501 ttattacttt gcttcattaa aatcagctta atgaata
//
LOCUS       XM_032618599            1536 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus macrophage scavenger receptor 1 (MSR1),
            transcript variant X2, mRNA.
ACCESSION   XM_032618599
VERSION     XM_032618599.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1536
                     /gene="MSR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746858"
     CDS             88..1452
                     /gene="MSR1"
                     /codon_start=1
                     /product="macrophage scavenger receptor types I and II
                     isoform X1"
                     /protein_id="XP_032474490.1"
                     /db_xref="GeneID:116746858"
                     /translation="MELWESFPNQQKDTDSCTESVKFDAHSMTALLPPNPKNGPTLQE
                     KMKSFRAALIALYLLVFVVLVPIIGIVAAQLLKWEMKNCTVGSVNANDISPSLAGKGN
                     DSEDAMRFREVVMEHMSNVEKRIQYLSDNEANLIDAKNFQNFSVTTDQRFNDVLFQLS
                     SLLSFIQGHGNVIGEVSKSLISLNTTLLDLQLSIATLNAKVQENAFKQQEEMSKLEER
                     VYNTSAEIKSLEEKQVHLEQEIKGEVKLLSNITNDLRLKDWEHSQTLKNITLIQGPPG
                     PPGEKGDRGPTGEVGPQGIPGPVGPPGLKGDRGSIGFPGSRGFPGSAGKTGRPGNSGQ
                     KGQKGEKGSGSVLTPSKTVRLVGGSGPHEGRVEIFHDGQWGTVCDDRWELRGGQVICR
                     SLGYQGARNVHKGAYFGQGTGPIWLNEVFCFGRESSIEECKIRQWGVRVCSHAEDAGV
                     TCNT"
     misc_feature    451..594
                     /gene="MSR1"
                     /note="Macrophage scavenger receptor; Region: Macscav_rec;
                     pfam03523"
                     /db_xref="CDD:460956"
     misc_feature    <604..>810
                     /gene="MSR1"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    919..1107
                     /gene="MSR1"
                     /note="Collagen triple helix repeat (20 copies); Region:
                     Collagen; pfam01391"
                     /db_xref="CDD:460189"
     misc_feature    1144..1446
                     /gene="MSR1"
                     /note="Scavenger receptor Cys-rich; Region: SR;
                     smart00202"
                     /db_xref="CDD:214555"
ORIGIN      
        1 ggaagtggat aaatcagtgc tgcgtcttta ggacacggta aaagaagttt acttatgctt
       61 ttcccaaatt gcttctgttg agtaagtatg gaactgtggg agagctttcc caatcaacag
      121 aaggacactg atagctgtac agaatctgtg aagtttgatg ctcactcaat gaccgctttg
      181 cttcctccaa atcctaaaaa tggcccaact cttcaagaga aaatgaagtc tttcagagct
      241 gcactgattg ccctttatct ccttgtgttt gtagttcttg tacctatcat cggaatagtg
      301 gcagctcaac tcctgaaatg ggaaatgaag aattgcacag ttggttcagt taatgcaaat
      361 gatatatctc caagtctcgc aggaaaagga aatgacagtg aagatgcaat gagatttcga
      421 gaagtcgtta tggaacacat gagcaacgtg gagaagagaa tccaatatct ttcagataat
      481 gaagccaatc tcatagatgc caagaatttc caaaatttca gtgtaacaac cgatcaaagg
      541 tttaatgacg ttcttttcca gctaagttcc ttactttcct tcatccaggg acatggaaat
      601 gtaataggtg aagtctccaa gtcattaata agtctgaaca ccacactgct tgatttgcag
      661 ctcagtattg caacactgaa tgccaaagtc caagagaatg catttaaaca acaagaggag
      721 atgagtaaat tagaggagcg tgtgtacaat acatcagcag aaattaagtc tctggaagaa
      781 aaacaagtgc atttggaaca ggaaataaaa ggagaagtga aactgttgag taacatcact
      841 aatgatctca ggctgaagga ttgggaacat tctcagacac tgaaaaatat cactttaatt
      901 caaggtcctc ctggacctcc aggtgaaaaa ggagatagag gtcccactgg agaagttggt
      961 ccacaaggca ttccaggtcc agtaggtcct ccaggtctta aaggtgatcg aggatccatt
     1021 ggctttcctg gaagtcgagg attcccagga tcagcgggga agaccgggag gccaggaaat
     1081 tctggacaaa aaggccagaa gggggaaaaa gggagtggaa gcgtgctaac accgtctaag
     1141 acagttcgac tggttggtgg tagcggccct cacgaaggca gagtggaaat tttccatgat
     1201 ggccagtggg gtacagtttg tgacgaccgc tgggaattgc gtggaggaca ggtcatctgt
     1261 aggagtttgg gataccaggg tgctcgaaat gtgcataagg gagcttattt tggacaaggt
     1321 actggtccaa tatggctgaa tgaagtattt tgttttggga gagaatcatc tattgaagag
     1381 tgtaaaatta gacaatgggg tgtgagagtc tgttcacatg ctgaagatgc cggggtcact
     1441 tgcaatacat aatgcaccat attttcattc acatttatga aattgctgca aaatgatttt
     1501 tattactttg cttcattaaa atcagcttaa tgaata
//
LOCUS       XM_032618600            1473 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus macrophage scavenger receptor 1 (MSR1),
            transcript variant X3, mRNA.
ACCESSION   XM_032618600
VERSION     XM_032618600.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1473
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1473
                     /gene="MSR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746858"
     CDS             25..1389
                     /gene="MSR1"
                     /codon_start=1
                     /product="macrophage scavenger receptor types I and II
                     isoform X1"
                     /protein_id="XP_032474491.1"
                     /db_xref="GeneID:116746858"
                     /translation="MELWESFPNQQKDTDSCTESVKFDAHSMTALLPPNPKNGPTLQE
                     KMKSFRAALIALYLLVFVVLVPIIGIVAAQLLKWEMKNCTVGSVNANDISPSLAGKGN
                     DSEDAMRFREVVMEHMSNVEKRIQYLSDNEANLIDAKNFQNFSVTTDQRFNDVLFQLS
                     SLLSFIQGHGNVIGEVSKSLISLNTTLLDLQLSIATLNAKVQENAFKQQEEMSKLEER
                     VYNTSAEIKSLEEKQVHLEQEIKGEVKLLSNITNDLRLKDWEHSQTLKNITLIQGPPG
                     PPGEKGDRGPTGEVGPQGIPGPVGPPGLKGDRGSIGFPGSRGFPGSAGKTGRPGNSGQ
                     KGQKGEKGSGSVLTPSKTVRLVGGSGPHEGRVEIFHDGQWGTVCDDRWELRGGQVICR
                     SLGYQGARNVHKGAYFGQGTGPIWLNEVFCFGRESSIEECKIRQWGVRVCSHAEDAGV
                     TCNT"
     misc_feature    388..531
                     /gene="MSR1"
                     /note="Macrophage scavenger receptor; Region: Macscav_rec;
                     pfam03523"
                     /db_xref="CDD:460956"
     misc_feature    <541..>747
                     /gene="MSR1"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    856..1044
                     /gene="MSR1"
                     /note="Collagen triple helix repeat (20 copies); Region:
                     Collagen; pfam01391"
                     /db_xref="CDD:460189"
     misc_feature    1081..1383
                     /gene="MSR1"
                     /note="Scavenger receptor Cys-rich; Region: SR;
                     smart00202"
                     /db_xref="CDD:214555"
ORIGIN      
        1 gagctattaa aatcgtccag aagtatggaa ctgtgggaga gctttcccaa tcaacagaag
       61 gacactgata gctgtacaga atctgtgaag tttgatgctc actcaatgac cgctttgctt
      121 cctccaaatc ctaaaaatgg cccaactctt caagagaaaa tgaagtcttt cagagctgca
      181 ctgattgccc tttatctcct tgtgtttgta gttcttgtac ctatcatcgg aatagtggca
      241 gctcaactcc tgaaatggga aatgaagaat tgcacagttg gttcagttaa tgcaaatgat
      301 atatctccaa gtctcgcagg aaaaggaaat gacagtgaag atgcaatgag atttcgagaa
      361 gtcgttatgg aacacatgag caacgtggag aagagaatcc aatatctttc agataatgaa
      421 gccaatctca tagatgccaa gaatttccaa aatttcagtg taacaaccga tcaaaggttt
      481 aatgacgttc ttttccagct aagttcctta ctttccttca tccagggaca tggaaatgta
      541 ataggtgaag tctccaagtc attaataagt ctgaacacca cactgcttga tttgcagctc
      601 agtattgcaa cactgaatgc caaagtccaa gagaatgcat ttaaacaaca agaggagatg
      661 agtaaattag aggagcgtgt gtacaataca tcagcagaaa ttaagtctct ggaagaaaaa
      721 caagtgcatt tggaacagga aataaaagga gaagtgaaac tgttgagtaa catcactaat
      781 gatctcaggc tgaaggattg ggaacattct cagacactga aaaatatcac tttaattcaa
      841 ggtcctcctg gacctccagg tgaaaaagga gatagaggtc ccactggaga agttggtcca
      901 caaggcattc caggtccagt aggtcctcca ggtcttaaag gtgatcgagg atccattggc
      961 tttcctggaa gtcgaggatt cccaggatca gcggggaaga ccgggaggcc aggaaattct
     1021 ggacaaaaag gccagaaggg ggaaaaaggg agtggaagcg tgctaacacc gtctaagaca
     1081 gttcgactgg ttggtggtag cggccctcac gaaggcagag tggaaatttt ccatgatggc
     1141 cagtggggta cagtttgtga cgaccgctgg gaattgcgtg gaggacaggt catctgtagg
     1201 agtttgggat accagggtgc tcgaaatgtg cataagggag cttattttgg acaaggtact
     1261 ggtccaatat ggctgaatga agtattttgt tttgggagag aatcatctat tgaagagtgt
     1321 aaaattagac aatggggtgt gagagtctgt tcacatgctg aagatgccgg ggtcacttgc
     1381 aatacataat gcaccatatt ttcattcaca tttatgaaat tgctgcaaaa tgatttttat
     1441 tactttgctt cattaaaatc agcttaatga ata
//
LOCUS       XM_032618601            1503 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus macrophage scavenger receptor 1 (MSR1),
            transcript variant X4, mRNA.
ACCESSION   XM_032618601
VERSION     XM_032618601.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1503
                     /gene="MSR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746858"
     CDS             55..1419
                     /gene="MSR1"
                     /codon_start=1
                     /product="macrophage scavenger receptor types I and II
                     isoform X1"
                     /protein_id="XP_032474492.1"
                     /db_xref="GeneID:116746858"
                     /translation="MELWESFPNQQKDTDSCTESVKFDAHSMTALLPPNPKNGPTLQE
                     KMKSFRAALIALYLLVFVVLVPIIGIVAAQLLKWEMKNCTVGSVNANDISPSLAGKGN
                     DSEDAMRFREVVMEHMSNVEKRIQYLSDNEANLIDAKNFQNFSVTTDQRFNDVLFQLS
                     SLLSFIQGHGNVIGEVSKSLISLNTTLLDLQLSIATLNAKVQENAFKQQEEMSKLEER
                     VYNTSAEIKSLEEKQVHLEQEIKGEVKLLSNITNDLRLKDWEHSQTLKNITLIQGPPG
                     PPGEKGDRGPTGEVGPQGIPGPVGPPGLKGDRGSIGFPGSRGFPGSAGKTGRPGNSGQ
                     KGQKGEKGSGSVLTPSKTVRLVGGSGPHEGRVEIFHDGQWGTVCDDRWELRGGQVICR
                     SLGYQGARNVHKGAYFGQGTGPIWLNEVFCFGRESSIEECKIRQWGVRVCSHAEDAGV
                     TCNT"
     misc_feature    418..561
                     /gene="MSR1"
                     /note="Macrophage scavenger receptor; Region: Macscav_rec;
                     pfam03523"
                     /db_xref="CDD:460956"
     misc_feature    <571..>777
                     /gene="MSR1"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    886..1074
                     /gene="MSR1"
                     /note="Collagen triple helix repeat (20 copies); Region:
                     Collagen; pfam01391"
                     /db_xref="CDD:460189"
     misc_feature    1111..1413
                     /gene="MSR1"
                     /note="Scavenger receptor Cys-rich; Region: SR;
                     smart00202"
                     /db_xref="CDD:214555"
ORIGIN      
        1 tgttgaacag catgatgtag gattgtatca accacgcttc tcggagaaag aagtatggaa
       61 ctgtgggaga gctttcccaa tcaacagaag gacactgata gctgtacaga atctgtgaag
      121 tttgatgctc actcaatgac cgctttgctt cctccaaatc ctaaaaatgg cccaactctt
      181 caagagaaaa tgaagtcttt cagagctgca ctgattgccc tttatctcct tgtgtttgta
      241 gttcttgtac ctatcatcgg aatagtggca gctcaactcc tgaaatggga aatgaagaat
      301 tgcacagttg gttcagttaa tgcaaatgat atatctccaa gtctcgcagg aaaaggaaat
      361 gacagtgaag atgcaatgag atttcgagaa gtcgttatgg aacacatgag caacgtggag
      421 aagagaatcc aatatctttc agataatgaa gccaatctca tagatgccaa gaatttccaa
      481 aatttcagtg taacaaccga tcaaaggttt aatgacgttc ttttccagct aagttcctta
      541 ctttccttca tccagggaca tggaaatgta ataggtgaag tctccaagtc attaataagt
      601 ctgaacacca cactgcttga tttgcagctc agtattgcaa cactgaatgc caaagtccaa
      661 gagaatgcat ttaaacaaca agaggagatg agtaaattag aggagcgtgt gtacaataca
      721 tcagcagaaa ttaagtctct ggaagaaaaa caagtgcatt tggaacagga aataaaagga
      781 gaagtgaaac tgttgagtaa catcactaat gatctcaggc tgaaggattg ggaacattct
      841 cagacactga aaaatatcac tttaattcaa ggtcctcctg gacctccagg tgaaaaagga
      901 gatagaggtc ccactggaga agttggtcca caaggcattc caggtccagt aggtcctcca
      961 ggtcttaaag gtgatcgagg atccattggc tttcctggaa gtcgaggatt cccaggatca
     1021 gcggggaaga ccgggaggcc aggaaattct ggacaaaaag gccagaaggg ggaaaaaggg
     1081 agtggaagcg tgctaacacc gtctaagaca gttcgactgg ttggtggtag cggccctcac
     1141 gaaggcagag tggaaatttt ccatgatggc cagtggggta cagtttgtga cgaccgctgg
     1201 gaattgcgtg gaggacaggt catctgtagg agtttgggat accagggtgc tcgaaatgtg
     1261 cataagggag cttattttgg acaaggtact ggtccaatat ggctgaatga agtattttgt
     1321 tttgggagag aatcatctat tgaagagtgt aaaattagac aatggggtgt gagagtctgt
     1381 tcacatgctg aagatgccgg ggtcacttgc aatacataat gcaccatatt ttcattcaca
     1441 tttatgaaat tgctgcaaaa tgatttttat tactttgctt cattaaaatc agcttaatga
     1501 ata
//
LOCUS       XM_032618603            1348 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus macrophage scavenger receptor 1 (MSR1),
            transcript variant X5, mRNA.
ACCESSION   XM_032618603
VERSION     XM_032618603.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1348
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1348
                     /gene="MSR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746858"
     CDS             89..1264
                     /gene="MSR1"
                     /codon_start=1
                     /product="macrophage scavenger receptor types I and II
                     isoform X2"
                     /protein_id="XP_032474494.1"
                     /db_xref="GeneID:116746858"
                     /translation="MELWESFPNQQKDTDSCTESVKFDAHSMTALLPPNPKNGPTLQE
                     KMKSFRAALIALYLLVFVVLVPIIGIVAAQLLKWEMKNCTVGSVNANDISPSLAGKGN
                     DSEDAMRFREVVMEHMSNVEKRIQYLSDNEANLIDAKNFQNFSVTTDQRFNDVLFQLS
                     SLLSFIQGHGNVIGEVSKSLISLNTTLLDLQLSIATLNAKVQENAFKQQEEMSKLEER
                     VYNTSAEIKSLEEKQVHLEQEIKGEVKLLSNITNDLRLKDWEHSQTLKNITLIQGPPG
                     PPGEKGDRGPTGEVGPQGIPGPVGPPGLKGDRGSIGFPGSRGFPGSAGKTGRPGNSGQ
                     KGQKGEKGSGSVLSTGPIWLNEVFCFGRESSIEECKIRQWGVRVCSHAEDAGVTCNT"
     misc_feature    452..595
                     /gene="MSR1"
                     /note="Macrophage scavenger receptor; Region: Macscav_rec;
                     pfam03523"
                     /db_xref="CDD:460956"
     misc_feature    671..>1141
                     /gene="MSR1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    920..1108
                     /gene="MSR1"
                     /note="Collagen triple helix repeat (20 copies); Region:
                     Collagen; pfam01391"
                     /db_xref="CDD:460189"
     misc_feature    <1130..1258
                     /gene="MSR1"
                     /note="Scavenger receptor cysteine-rich domain; Region:
                     SRCR; pfam00530"
                     /db_xref="CDD:459844"
ORIGIN      
        1 ctgaaatatt atgtgataaa ggttttaggt ttcaattgtt aagagaggga agtggataaa
       61 tcagtgctgc gtctttagga cacgaagtat ggaactgtgg gagagctttc ccaatcaaca
      121 gaaggacact gatagctgta cagaatctgt gaagtttgat gctcactcaa tgaccgcttt
      181 gcttcctcca aatcctaaaa atggcccaac tcttcaagag aaaatgaagt ctttcagagc
      241 tgcactgatt gccctttatc tccttgtgtt tgtagttctt gtacctatca tcggaatagt
      301 ggcagctcaa ctcctgaaat gggaaatgaa gaattgcaca gttggttcag ttaatgcaaa
      361 tgatatatct ccaagtctcg caggaaaagg aaatgacagt gaagatgcaa tgagatttcg
      421 agaagtcgtt atggaacaca tgagcaacgt ggagaagaga atccaatatc tttcagataa
      481 tgaagccaat ctcatagatg ccaagaattt ccaaaatttc agtgtaacaa ccgatcaaag
      541 gtttaatgac gttcttttcc agctaagttc cttactttcc ttcatccagg gacatggaaa
      601 tgtaataggt gaagtctcca agtcattaat aagtctgaac accacactgc ttgatttgca
      661 gctcagtatt gcaacactga atgccaaagt ccaagagaat gcatttaaac aacaagagga
      721 gatgagtaaa ttagaggagc gtgtgtacaa tacatcagca gaaattaagt ctctggaaga
      781 aaaacaagtg catttggaac aggaaataaa aggagaagtg aaactgttga gtaacatcac
      841 taatgatctc aggctgaagg attgggaaca ttctcagaca ctgaaaaata tcactttaat
      901 tcaaggtcct cctggacctc caggtgaaaa aggagataga ggtcccactg gagaagttgg
      961 tccacaaggc attccaggtc cagtaggtcc tccaggtctt aaaggtgatc gaggatccat
     1021 tggctttcct ggaagtcgag gattcccagg atcagcgggg aagaccggga ggccaggaaa
     1081 ttctggacaa aaaggccaga agggggaaaa agggagtgga agcgtgctaa gtactggtcc
     1141 aatatggctg aatgaagtat tttgttttgg gagagaatca tctattgaag agtgtaaaat
     1201 tagacaatgg ggtgtgagag tctgttcaca tgctgaagat gccggggtca cttgcaatac
     1261 ataatgcacc atattttcat tcacatttat gaaattgctg caaaatgatt tttattactt
     1321 tgcttcatta aaatcagctt aatgaata
//
LOCUS       XM_032618604            3800 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus macrophage scavenger receptor 1 (MSR1),
            transcript variant X6, mRNA.
ACCESSION   XM_032618604
VERSION     XM_032618604.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3800
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3800
                     /gene="MSR1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746858"
     CDS             89..1141
                     /gene="MSR1"
                     /codon_start=1
                     /product="macrophage scavenger receptor types I and II
                     isoform X3"
                     /protein_id="XP_032474495.1"
                     /db_xref="GeneID:116746858"
                     /translation="MELWESFPNQQKDTDSCTESVKFDAHSMTALLPPNPKNGPTLQE
                     KMKSFRAALIALYLLVFVVLVPIIGIVAAQLLKWEMKNCTVGSVNANDISPSLAGKGN
                     DSEDAMRFREVVMEHMSNVEKRIQYLSDNEANLIDAKNFQNFSVTTDQRFNDVLFQLS
                     SLLSFIQGHGNVIGEVSKSLISLNTTLLDLQLSIATLNAKVQENAFKQQEEMSKLEER
                     VYNTSAEIKSLEEKQVHLEQEIKGEVKLLSNITNDLRLKDWEHSQTLKNITLIQGPPG
                     PPGEKGDRGPTGEVGPQGIPGPVGPPGLKGDRGSIGFPGSRGFPGSAGKTGRPGNSGQ
                     KGQKGEKGSGSVLRPA"
     misc_feature    452..595
                     /gene="MSR1"
                     /note="Macrophage scavenger receptor; Region: Macscav_rec;
                     pfam03523"
                     /db_xref="CDD:460956"
     misc_feature    671..>1114
                     /gene="MSR1"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     Region: gly_rich_SclB; NF038329"
                     /db_xref="CDD:468478"
     misc_feature    920..1108
                     /gene="MSR1"
                     /note="Collagen triple helix repeat (20 copies); Region:
                     Collagen; pfam01391"
                     /db_xref="CDD:460189"
ORIGIN      
        1 ctgaaatatt atgtgataaa ggttttaggt ttcaattgtt aagagaggga agtggataaa
       61 tcagtgctgc gtctttagga cacgaagtat ggaactgtgg gagagctttc ccaatcaaca
      121 gaaggacact gatagctgta cagaatctgt gaagtttgat gctcactcaa tgaccgcttt
      181 gcttcctcca aatcctaaaa atggcccaac tcttcaagag aaaatgaagt ctttcagagc
      241 tgcactgatt gccctttatc tccttgtgtt tgtagttctt gtacctatca tcggaatagt
      301 ggcagctcaa ctcctgaaat gggaaatgaa gaattgcaca gttggttcag ttaatgcaaa
      361 tgatatatct ccaagtctcg caggaaaagg aaatgacagt gaagatgcaa tgagatttcg
      421 agaagtcgtt atggaacaca tgagcaacgt ggagaagaga atccaatatc tttcagataa
      481 tgaagccaat ctcatagatg ccaagaattt ccaaaatttc agtgtaacaa ccgatcaaag
      541 gtttaatgac gttcttttcc agctaagttc cttactttcc ttcatccagg gacatggaaa
      601 tgtaataggt gaagtctcca agtcattaat aagtctgaac accacactgc ttgatttgca
      661 gctcagtatt gcaacactga atgccaaagt ccaagagaat gcatttaaac aacaagagga
      721 gatgagtaaa ttagaggagc gtgtgtacaa tacatcagca gaaattaagt ctctggaaga
      781 aaaacaagtg catttggaac aggaaataaa aggagaagtg aaactgttga gtaacatcac
      841 taatgatctc aggctgaagg attgggaaca ttctcagaca ctgaaaaata tcactttaat
      901 tcaaggtcct cctggacctc caggtgaaaa aggagataga ggtcccactg gagaagttgg
      961 tccacaaggc attccaggtc cagtaggtcc tccaggtctt aaaggtgatc gaggatccat
     1021 tggctttcct ggaagtcgag gattcccagg atcagcgggg aagaccggga ggccaggaaa
     1081 ttctggacaa aaaggccaga agggggaaaa agggagtgga agcgtgctaa gaccagcata
     1141 actccctgat catattaggg caggcccctt tgaagatcag gtgggttgga cgggacaccc
     1201 tgtgctacca tctcactaaa aggaccttca cctctggaca agtcacagca caactgattc
     1261 caagatccct ttgtggctcc tccaaacaac cctggttccc gaatggtgcc tggcttccgc
     1321 atgccttcct ctcctggtcc ttggtactgt ttgggtctct gctcccttgc tcatacctct
     1381 acccactcta gcaccccacc atcaccgcca tcctgagctg ggacgcctcc caggtactga
     1441 ctggcgggct gttcctacct tcctcagagc taggccagga gccctctgcc acccactcat
     1501 ctagtgtctt ctgaacccat cgggttccag gagaaatctc atggataccg attatatgtg
     1561 cattctctac cctcaaaaat accagtctca accagagata gggatgccct aaaaataatc
     1621 cgtttgttca ttcagcatat gtttattgtg tacctcctgg agctggacta aactgcttat
     1681 aagatagcta ttgtccctgg acttcctgaa ctaatcgtcc caggaagaca tagacatgga
     1741 aacaggcagt tatataatag agcagaggta tatggtggga aggaacaggg ttccataggt
     1801 gttcagagta ggtcaagatt ttttaattcc ttagaatttt aaaaaggtaa attgactttg
     1861 atttgcttag tttgcattta tgtcttctta ttctccaatt tatggcatat ttgttttcaa
     1921 gttttatagt gaggtctagt ggagctgggg cagttcattc aacatttttg aaccaaaaaa
     1981 caaaacttgt ttccttaaaa taccaagctg tttcaagcaa caatattttg atcataaaaa
     2041 aaaaatgctg aaaaaaatga tgaaattgtt ttagtctaaa aagatctttt caccagcctg
     2101 ctgcatttag tatccttggt aaaagcacgt gtaaaaaaca aagttcctaa gtgtgctagt
     2161 tacattattg aataaaaact gtaaaaaaaa atttttttaa acacaactca ttgtacttca
     2221 tgctttaaat atccagtata gatcctggag aaaaataaat atttcagtag aactggagat
     2281 attttgtgta ggtgaagaaa gggctgacag tgagaaagga gaaaacgtaa gaaaaggcaa
     2341 actaaaaaaa ggaaaaatgt gggattccat gttagttttg aatgtctctc tattaatcaa
     2401 cagattgaat tttctcaact ctcccttcct tcagggttta acacatagtc ccaggattca
     2461 caacattaat gttctagtag aattctcagt agtgtcccta tgtgtgtctc cccacttcca
     2521 ttcattcccc agtgaaatgg gcatcgtatt gcctgcctca ctggattgtt gtgagggtca
     2581 cataagatat tgtgtgtatg cagatgctct gtaatactat aaagtgcttt acactcataa
     2641 ggcatagttc tcagtggtcg tggtctctct gaactggagc tgctcttcct cactggtata
     2701 atgcagacat ttaaaatccg taatcgggac aggagtgaga gccgaatgaa aatgcaagaa
     2761 gctaaataaa tgtcatggac aaaaagaggt gctggagaat cagataagat tttacattag
     2821 atagagcaac gcaagtgtga ccagatcaca aatcaatgag tctgagccga gcaaaagagc
     2881 ataagttata aatagaagga gtgactaaac agagtgcacg ccagaggcca gaagctgtca
     2941 acagaggtca gaacaaaatg tcaggctaat aaaacgggaa ttccaggctc tgaggaacaa
     3001 agtgtgagcc caagacgctg tagatgaaaa agctccgaga agtgttgaaa caaattaaag
     3061 ttgtcagtgg tactctgggt ctgtgctggc ttgacaccaa agtctccagg aaaaaaaggg
     3121 gcagagagga atcagatcat cctcagtagg agcaaactgg caacgatgac gagccagtta
     3181 aagcaaacat ctgaagatga gttgtatctt tttgcctgtg gtttaattgg gtaggacttc
     3241 ctaccccatt ctgtaccggg gaacaggcag cacctgggag ccctcttctt ctgcagcagt
     3301 atttggtcca cacttgccac tgacggccct gatcccaggg accctggggg acaatgccag
     3361 ggggttcggt tcaccagtta tctgacaccc cagactgcaa agggattctt aagtgtgtca
     3421 aatacgaacc tgaactttcc aaattagggg agaaaggctt ttttctttag acagaagtag
     3481 aggctgaatt gcccagttca aatgcacaaa ttacaccaaa tttaataaca tacaataaaa
     3541 agaaaacaag tctgcaccaa gttctaaagc ttgtcctaat agtttgctgt gttctcaccc
     3601 taacttgaac gtgtatgtgt ttcaagcaaa cagaattcca gccatacaat gaaacacttt
     3661 gtatgaggtt ctgtcctcaa tataccaatt actaatgtgt catttgttag tgttttctac
     3721 tgtgcttttt acccaataag actgtaatta ggatgtgaat ttagagtaaa tgtcttattt
     3781 tgaaactcat acaatgatac
//
LOCUS       XM_032618605            5387 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology domain containing A2
            (PLEKHA2), transcript variant X1, mRNA.
ACCESSION   XM_032618605
VERSION     XM_032618605.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5387
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5387
                     /gene="PLEKHA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 21 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746859"
     CDS             563..1840
                     /gene="PLEKHA2"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family A
                     member 2 isoform X1"
                     /protein_id="XP_032474496.1"
                     /db_xref="GeneID:116746859"
                     /translation="MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANCLLWYMD
                     NPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLK
                     DWVEALNQASKITVPKVGNLPLTTEVVKSLATPLALEKKPQVAYKTEIIGGVVVHTPI
                     NQNGGDGQEGSEPGSHAILRRSQSYIPTTGCRVPTGPPLIKSGYCVKQGNVRKSWKRR
                     FFALDDFTICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTF
                     YVQADSPEDMHSWIKEIGAAVQALKCHPREMSFSRSISLTRSGSSSLSGGPNSVLCRG
                     RPPLEERRALCKAPSVASSWQPWTPVPQAGEKLLPTEETPEDSFFMPRLGESSTSGVL
                     PSSRIRHRSEPQHPKEKPFVFNLDDENIRTSDV"
     misc_feature    563..916
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, N-terminal repeat;
                     Region: PH1_TAPP1_2; cd13270"
                     /db_xref="CDD:270089"
     misc_feature    1136..1480
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, C-terminal repeat;
                     Region: PH2_TAPP1_2; cd13271"
                     /db_xref="CDD:270090"
     misc_feature    order(1181..1183,1187..1192,1214..1216,1247..1249,
                     1277..1282,1382..1384)
                     /gene="PLEKHA2"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270090"
ORIGIN      
        1 ggaagaataa acggggtaaa gagtgagccc gcgggccggc tcgtctccct gtttctagga
       61 tgccctcatc cccgggcccc tttcccactc ggacacctgc tgcccggggc ctgcgtcgga
      121 agcagggcct cccccggcgc ggccgaggtg gtcccggcgc gcagcctctg gggccgcctc
      181 cgggcgcccc gcccccgccg agtccgcgca gcccgcgcgc ccggccgcgc cccctcccag
      241 cccgcggcgc cccggcaccc ctctccgccc ccggcgggct cggcggagca ttgtactcac
      301 atccggggct gggttttgct ttaatgcgaa acgtaattaa cccggaaaaa agagccgaag
      361 gacaagagag gaggagggag ggaggagggg agggggagag gagcgagagg cgcgagagac
      421 cccgagagtt tggcggcgac agacatcccc cgagagcgac ggcccgcggg gccccagagg
      481 cgcttcccag cccgatgtaa cccacgcacc ctgcccgagc cccggccctg cgcggcgggg
      541 gtaatgtgag cagagcccag gaatgcctta tgtggatcgg cagaaccgaa tctgtgggtt
      601 tctggacatc gaggagaatg agaacagcgg caagtttctg cggaggtact ttattctgga
      661 cacgcaggcc aactgccttc tctggtacat ggacaacccc cagaacctgg cagttggggc
      721 aggagccgtc ggatctttgc agctgaccta catctcgaag gtgagcatag ccaccccaaa
      781 gcagaaaccc aagactccgt tttgctttgt catcaacgcc ctctcgcaga ggtattttct
      841 tcaagccaat gaccagaaag atctgaagga ctgggtcgaa gccctgaacc aagccagcaa
      901 aatcactgta cccaaagttg ggaacttgcc cctgacgacc gaagttgtca agagcctagc
      961 aactcctctg gccctggaga agaagcccca ggtggcctac aagacagaga tcatcggagg
     1021 cgtggtggta cacacgccca tcaaccagaa cggtggggat gggcaggaag ggagtgagcc
     1081 tggctcccac gccatccttc gaaggtctca gagttacatc cccacgacag gctgccgtgt
     1141 ccccaccggg ccccccctca ttaagagcgg ctattgtgtg aagcaaggga atgtgcgcaa
     1201 gagctggaaa cggcgcttct ttgcgctgga cgactttacc atctgctact tcaagtgtga
     1261 gcaggaccga gaaccactgc gtaccatatt cctcaaggat gttctcaaga cccacgagtg
     1321 tttggtcaag tctggcgacc tgctgatgag ggacaacctg tttgaaataa taaccagctc
     1381 caggaccttc tacgtgcagg cagacagtcc agaagacatg cacagctgga ttaaggagat
     1441 cggggcagct gtccaggccc tcaagtgcca ccccagagaa atgtcctttt ctcgatccat
     1501 ttctttgacc cgctctggaa gctccagcct ctcagggggg cccaactctg tcttgtgcag
     1561 agggcggcca cctctggagg agagaagggc cctctgcaaa gccccctccg tggcttcctc
     1621 ctggcagccc tggacacctg tcccccaggc tggggaaaag ctgctgccca ctgaagagac
     1681 tcctgaggac tcttttttca tgcctcgact tggggagagc agtacttctg gggtgctgcc
     1741 cagctcccgg ataaggcaca gatcggagcc ccagcacccc aaggagaagc catttgtgtt
     1801 caacctcgat gatgaaaaca tacggacctc tgatgtgtga tgaggcgcag tgcccaggag
     1861 ggaaggggag gactcagatg tccaaggggc cgtgactcag tttctccacc tgctggagga
     1921 cagtcggagg ccttcctggc actcacatcc ctgtggagct ctcttggggg aggggagcat
     1981 ccagctgttt tttttttttt tttaaatcaa tgcagtgttt ttaattcggg aaagtcacca
     2041 ggttagacct gtaggcttgc tcagtggaga gcagggtgcc tcttaccttg actcttccat
     2101 ggtccacctg gtgagtggag gttggaaggc caatttcatc cctaaccaag tttttgttcc
     2161 ttgtcctcgt cttattagtt tcttcccttt gttttcaggc caggtgcaga accttgaggc
     2221 cagtcatctg gttttatcct attgctgttc attggctgaa gtttgactgt gaagtaggag
     2281 ggtgggaact cacccaactg aaactggggg aagcagtggg ggacacccag gctccagctt
     2341 ggctgggata cattctgagg ggaggtgtta aaatctgggc gctggtcggg gggggccctg
     2401 aatgtcgacc agggcagatt cccccaacct ccgggggacc tccatggggg aagaaatagg
     2461 gacctcttgt aaggaatggg agaatgcact cccaacccca gtgcatcatc cagtttcggg
     2521 aattactctg ttctctttga gatgttcttt caccccagat actgtcgctg tgagagacag
     2581 acctgcccac cctgttgctg tgtcaggccc ttaggatggg tttatcagtg ttcagtgctg
     2641 agaacagaac agacattgcc cttgatatgg cgttacttgg aatgtgtgga gggttgatga
     2701 gtgtatgata attcacttgt gtgatacatc acatctgtat tttagagttt gagagttgct
     2761 ttaaagcagg tgctgggaag agatggagtt gagttcatcc agctaaaaat ttttgatcca
     2821 tgttttccag acagaagaaa aggtctcttt tcgcaaagac agatgatctt gggttcttgc
     2881 ctctcagctc ttctttcatg ggccgatagt agtctgattt taagtgctgt atattgtata
     2941 ccttggcaga tttgctttct ttctgttctt tgtgttgccc tttgggtgat gcctcgtgtc
     3001 tgtacttgca tgatgaaatc ttgtcgtctg acgaggttca acgttcataa cagtgaggag
     3061 ataacaaaga taatcttgag agatatttat atctttaata aaatagaaac tgtgcagaga
     3121 aacattgatt tacagcctat gcattgctgg ttagagattt cccaggtaga agagcataga
     3181 ttgtatttcc catcccgtat tttaggatgt accttcttcc atttgacaag agatcctatt
     3241 tccagggtcc ctgggagaaa ttatctgtcc agcttatgtg gtgaactgct accaaggttc
     3301 cctaaaggga gggagcttaa ctcagttcta tctagaactc tgtatcagct agatcagtta
     3361 attttgtctt taaattaaga attaacgagt agaggaggag actgtgatca gaaaatcctt
     3421 agtggcttga gggaaatctt ctgtttgttt cgggcagtgt agtttccttg aagtctgtgt
     3481 caggttgaga acttttcgac cgtacttctt tggagataat tttcacttaa attgtttgcc
     3541 ctagtggtcc tggtataaaa aaggaaatct gctctagatt tctctctctc tctttttttc
     3601 ccttcttttc tgcagcctcc tgtatacttt tgtccttaga aatccctggt ttggaggtta
     3661 tttatttatg agtgatcaag gtgacaacat acttcaagta gcctggtttc aagaaggcat
     3721 tacgaattct taaagttctt tgtctcaggt ttcatcttca gattttcctc aagaaaattc
     3781 tttggctagg tgaaagaaag tgcacagaga aatggaacta acaaagataa attaggacct
     3841 tctgagatct ctgtaaacat tccctgactc atggaaagat gtcatctcct ggtgtttaac
     3901 ttgtgaaaat ctacccattt cttcctcttt taaataaact ctctgctcga ttactactgc
     3961 tgaattaatt ggccattatg gtaagctggt atgtttctta ttcagtaagg tttattttga
     4021 gaatgtatta aattaaacat gcttataaat ccagattgta tgatcataat agaggggaaa
     4081 caaggattct agttggcaga tacttgggaa ttccaagtta gagcgttgtt aatgtagttc
     4141 caacaccaga taaatagaat tatcttcagt gaagcttaga ggcattctca ttgccaaacc
     4201 ttatctcaga attcctttcg agctcctatt tcttagcttc tggttaattt cacatcacac
     4261 cttttaatgt tactacacgt gtgagccaaa gatggtgcat atacgaccaa agcatttggt
     4321 gtcaaatgtg aaaaatggaa ccaaatggaa aaaacaagga ggggatgcaa tatcgattag
     4381 tagttaagtg cataggctct ggaataaacc tgttcatttt gtttgtttta aaaacaggaa
     4441 ccaaaaaaag gtactgcatt tttttgtgtg tgtggaataa aaacgttctc tgagttgtgc
     4501 tgttttcata agacttttga catggtcttg acccactgtg tgtaacagct tcaggtgtct
     4561 ccccataggt gaactattat tgtccactgt tcttgaaagt taaggaattg cttgctcagg
     4621 gtcagctgat ggctggtgaa cgtagtttgg ccttttgcat tctgtgagat gacagttgta
     4681 ctaaggtgtc catcaggtaa agcgatctca ggtgaaaatt gcagagttac acatctgttt
     4741 ctgaatagaa tgctgagctc ccatgagaaa gagtccaact tcatagttca cttgaagcag
     4801 aaggtggttt gttgttttat ttttttcccc ctgaatgtaa ctgtgctctg atacggtctg
     4861 aaaggatcca ataaataagt ggcagattca gtagttgagc agtgggattt gatatgtttg
     4921 ttttcactgt taaccagata aataggcata aggaagtagc agagttttgg aaactgagtt
     4981 tcccaaatca gctttgttta taaagtttga acatgtcaga aacggacaga tttattacat
     5041 cttttctacc aatgtcactt tttttcctta gtcccttttt ctctctgtta ctgcctgcag
     5101 tagtgaatta cagtcactca tgctcggtag agtttcaata aagagattat ttggccccca
     5161 aacatactgt ttgacccctt cccccgctgc tccccaaggt gtagcatgat tctgtgtttt
     5221 gaaccagtat gtttcagctg tgaaatgcac ttgtaggctg agctgagtgc atggaaactc
     5281 ttacgcttct cattttaagc gatctcctac ttggtatgta gcaaaaaata attttctaaa
     5341 actgttttgt cgcttgtttt gtaataaaaa ccatgtgaaa tactgaa
//
LOCUS       XM_032618606            5124 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology domain containing A2
            (PLEKHA2), transcript variant X2, mRNA.
ACCESSION   XM_032618606
VERSION     XM_032618606.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5124
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5124
                     /gene="PLEKHA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746859"
     CDS             300..1577
                     /gene="PLEKHA2"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family A
                     member 2 isoform X1"
                     /protein_id="XP_032474497.1"
                     /db_xref="GeneID:116746859"
                     /translation="MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANCLLWYMD
                     NPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLK
                     DWVEALNQASKITVPKVGNLPLTTEVVKSLATPLALEKKPQVAYKTEIIGGVVVHTPI
                     NQNGGDGQEGSEPGSHAILRRSQSYIPTTGCRVPTGPPLIKSGYCVKQGNVRKSWKRR
                     FFALDDFTICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTF
                     YVQADSPEDMHSWIKEIGAAVQALKCHPREMSFSRSISLTRSGSSSLSGGPNSVLCRG
                     RPPLEERRALCKAPSVASSWQPWTPVPQAGEKLLPTEETPEDSFFMPRLGESSTSGVL
                     PSSRIRHRSEPQHPKEKPFVFNLDDENIRTSDV"
     misc_feature    300..653
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, N-terminal repeat;
                     Region: PH1_TAPP1_2; cd13270"
                     /db_xref="CDD:270089"
     misc_feature    873..1217
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, C-terminal repeat;
                     Region: PH2_TAPP1_2; cd13271"
                     /db_xref="CDD:270090"
     misc_feature    order(918..920,924..929,951..953,984..986,1014..1019,
                     1119..1121)
                     /gene="PLEKHA2"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270090"
ORIGIN      
        1 cgccgccgtc tcgcggccgc ctccggtggc ccccggcgag ccctcagggc agcccctcct
       61 ccagccctcg ggagcgcccg gggtggccaa ggtcgccgcc gccaggggtc gggctgcggg
      121 gtggggccgc gggcagggtg ggggcgggtg ttctgcggag ctgcgttttc tcacgtttgc
      181 agcggcgaaa cttctccgcg ggttctggcg ctggggcccc ggctcggcca cgactgccag
      241 ggcagcgggt aggggagacg agcagagaac gtgcagggta atgtgagcag agcccaggaa
      301 tgccttatgt ggatcggcag aaccgaatct gtgggtttct ggacatcgag gagaatgaga
      361 acagcggcaa gtttctgcgg aggtacttta ttctggacac gcaggccaac tgccttctct
      421 ggtacatgga caacccccag aacctggcag ttggggcagg agccgtcgga tctttgcagc
      481 tgacctacat ctcgaaggtg agcatagcca ccccaaagca gaaacccaag actccgtttt
      541 gctttgtcat caacgccctc tcgcagaggt attttcttca agccaatgac cagaaagatc
      601 tgaaggactg ggtcgaagcc ctgaaccaag ccagcaaaat cactgtaccc aaagttggga
      661 acttgcccct gacgaccgaa gttgtcaaga gcctagcaac tcctctggcc ctggagaaga
      721 agccccaggt ggcctacaag acagagatca tcggaggcgt ggtggtacac acgcccatca
      781 accagaacgg tggggatggg caggaaggga gtgagcctgg ctcccacgcc atccttcgaa
      841 ggtctcagag ttacatcccc acgacaggct gccgtgtccc caccgggccc cccctcatta
      901 agagcggcta ttgtgtgaag caagggaatg tgcgcaagag ctggaaacgg cgcttctttg
      961 cgctggacga ctttaccatc tgctacttca agtgtgagca ggaccgagaa ccactgcgta
     1021 ccatattcct caaggatgtt ctcaagaccc acgagtgttt ggtcaagtct ggcgacctgc
     1081 tgatgaggga caacctgttt gaaataataa ccagctccag gaccttctac gtgcaggcag
     1141 acagtccaga agacatgcac agctggatta aggagatcgg ggcagctgtc caggccctca
     1201 agtgccaccc cagagaaatg tccttttctc gatccatttc tttgacccgc tctggaagct
     1261 ccagcctctc aggggggccc aactctgtct tgtgcagagg gcggccacct ctggaggaga
     1321 gaagggccct ctgcaaagcc ccctccgtgg cttcctcctg gcagccctgg acacctgtcc
     1381 cccaggctgg ggaaaagctg ctgcccactg aagagactcc tgaggactct tttttcatgc
     1441 ctcgacttgg ggagagcagt acttctgggg tgctgcccag ctcccggata aggcacagat
     1501 cggagcccca gcaccccaag gagaagccat ttgtgttcaa cctcgatgat gaaaacatac
     1561 ggacctctga tgtgtgatga ggcgcagtgc ccaggaggga aggggaggac tcagatgtcc
     1621 aaggggccgt gactcagttt ctccacctgc tggaggacag tcggaggcct tcctggcact
     1681 cacatccctg tggagctctc ttgggggagg ggagcatcca gctgtttttt tttttttttt
     1741 aaatcaatgc agtgttttta attcgggaaa gtcaccaggt tagacctgta ggcttgctca
     1801 gtggagagca gggtgcctct taccttgact cttccatggt ccacctggtg agtggaggtt
     1861 ggaaggccaa tttcatccct aaccaagttt ttgttccttg tcctcgtctt attagtttct
     1921 tccctttgtt ttcaggccag gtgcagaacc ttgaggccag tcatctggtt ttatcctatt
     1981 gctgttcatt ggctgaagtt tgactgtgaa gtaggagggt gggaactcac ccaactgaaa
     2041 ctgggggaag cagtggggga cacccaggct ccagcttggc tgggatacat tctgagggga
     2101 ggtgttaaaa tctgggcgct ggtcgggggg ggccctgaat gtcgaccagg gcagattccc
     2161 ccaacctccg ggggacctcc atgggggaag aaatagggac ctcttgtaag gaatgggaga
     2221 atgcactccc aaccccagtg catcatccag tttcgggaat tactctgttc tctttgagat
     2281 gttctttcac cccagatact gtcgctgtga gagacagacc tgcccaccct gttgctgtgt
     2341 caggccctta ggatgggttt atcagtgttc agtgctgaga acagaacaga cattgccctt
     2401 gatatggcgt tacttggaat gtgtggaggg ttgatgagtg tatgataatt cacttgtgtg
     2461 atacatcaca tctgtatttt agagtttgag agttgcttta aagcaggtgc tgggaagaga
     2521 tggagttgag ttcatccagc taaaaatttt tgatccatgt tttccagaca gaagaaaagg
     2581 tctcttttcg caaagacaga tgatcttggg ttcttgcctc tcagctcttc tttcatgggc
     2641 cgatagtagt ctgattttaa gtgctgtata ttgtatacct tggcagattt gctttctttc
     2701 tgttctttgt gttgcccttt gggtgatgcc tcgtgtctgt acttgcatga tgaaatcttg
     2761 tcgtctgacg aggttcaacg ttcataacag tgaggagata acaaagataa tcttgagaga
     2821 tatttatatc tttaataaaa tagaaactgt gcagagaaac attgatttac agcctatgca
     2881 ttgctggtta gagatttccc aggtagaaga gcatagattg tatttcccat cccgtatttt
     2941 aggatgtacc ttcttccatt tgacaagaga tcctatttcc agggtccctg ggagaaatta
     3001 tctgtccagc ttatgtggtg aactgctacc aaggttccct aaagggaggg agcttaactc
     3061 agttctatct agaactctgt atcagctaga tcagttaatt ttgtctttaa attaagaatt
     3121 aacgagtaga ggaggagact gtgatcagaa aatccttagt ggcttgaggg aaatcttctg
     3181 tttgtttcgg gcagtgtagt ttccttgaag tctgtgtcag gttgagaact tttcgaccgt
     3241 acttctttgg agataatttt cacttaaatt gtttgcccta gtggtcctgg tataaaaaag
     3301 gaaatctgct ctagatttct ctctctctct ttttttccct tcttttctgc agcctcctgt
     3361 atacttttgt ccttagaaat ccctggtttg gaggttattt atttatgagt gatcaaggtg
     3421 acaacatact tcaagtagcc tggtttcaag aaggcattac gaattcttaa agttctttgt
     3481 ctcaggtttc atcttcagat tttcctcaag aaaattcttt ggctaggtga aagaaagtgc
     3541 acagagaaat ggaactaaca aagataaatt aggaccttct gagatctctg taaacattcc
     3601 ctgactcatg gaaagatgtc atctcctggt gtttaacttg tgaaaatcta cccatttctt
     3661 cctcttttaa ataaactctc tgctcgatta ctactgctga attaattggc cattatggta
     3721 agctggtatg tttcttattc agtaaggttt attttgagaa tgtattaaat taaacatgct
     3781 tataaatcca gattgtatga tcataataga ggggaaacaa ggattctagt tggcagatac
     3841 ttgggaattc caagttagag cgttgttaat gtagttccaa caccagataa atagaattat
     3901 cttcagtgaa gcttagaggc attctcattg ccaaacctta tctcagaatt cctttcgagc
     3961 tcctatttct tagcttctgg ttaatttcac atcacacctt ttaatgttac tacacgtgtg
     4021 agccaaagat ggtgcatata cgaccaaagc atttggtgtc aaatgtgaaa aatggaacca
     4081 aatggaaaaa acaaggaggg gatgcaatat cgattagtag ttaagtgcat aggctctgga
     4141 ataaacctgt tcattttgtt tgttttaaaa acaggaacca aaaaaaggta ctgcattttt
     4201 ttgtgtgtgt ggaataaaaa cgttctctga gttgtgctgt tttcataaga cttttgacat
     4261 ggtcttgacc cactgtgtgt aacagcttca ggtgtctccc cataggtgaa ctattattgt
     4321 ccactgttct tgaaagttaa ggaattgctt gctcagggtc agctgatggc tggtgaacgt
     4381 agtttggcct tttgcattct gtgagatgac agttgtacta aggtgtccat caggtaaagc
     4441 gatctcaggt gaaaattgca gagttacaca tctgtttctg aatagaatgc tgagctccca
     4501 tgagaaagag tccaacttca tagttcactt gaagcagaag gtggtttgtt gttttatttt
     4561 tttccccctg aatgtaactg tgctctgata cggtctgaaa ggatccaata aataagtggc
     4621 agattcagta gttgagcagt gggatttgat atgtttgttt tcactgttaa ccagataaat
     4681 aggcataagg aagtagcaga gttttggaaa ctgagtttcc caaatcagct ttgtttataa
     4741 agtttgaaca tgtcagaaac ggacagattt attacatctt ttctaccaat gtcacttttt
     4801 ttccttagtc cctttttctc tctgttactg cctgcagtag tgaattacag tcactcatgc
     4861 tcggtagagt ttcaataaag agattatttg gcccccaaac atactgtttg accccttccc
     4921 ccgctgctcc ccaaggtgta gcatgattct gtgttttgaa ccagtatgtt tcagctgtga
     4981 aatgcacttg taggctgagc tgagtgcatg gaaactctta cgcttctcat tttaagcgat
     5041 ctcctacttg gtatgtagca aaaaataatt ttctaaaact gttttgtcgc ttgttttgta
     5101 ataaaaacca tgtgaaatac tgaa
//
LOCUS       XM_032618607            5099 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology domain containing A2
            (PLEKHA2), transcript variant X3, mRNA.
ACCESSION   XM_032618607
VERSION     XM_032618607.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5099
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5099
                     /gene="PLEKHA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746859"
     CDS             275..1552
                     /gene="PLEKHA2"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family A
                     member 2 isoform X1"
                     /protein_id="XP_032474498.1"
                     /db_xref="GeneID:116746859"
                     /translation="MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANCLLWYMD
                     NPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLK
                     DWVEALNQASKITVPKVGNLPLTTEVVKSLATPLALEKKPQVAYKTEIIGGVVVHTPI
                     NQNGGDGQEGSEPGSHAILRRSQSYIPTTGCRVPTGPPLIKSGYCVKQGNVRKSWKRR
                     FFALDDFTICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTF
                     YVQADSPEDMHSWIKEIGAAVQALKCHPREMSFSRSISLTRSGSSSLSGGPNSVLCRG
                     RPPLEERRALCKAPSVASSWQPWTPVPQAGEKLLPTEETPEDSFFMPRLGESSTSGVL
                     PSSRIRHRSEPQHPKEKPFVFNLDDENIRTSDV"
     misc_feature    275..628
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, N-terminal repeat;
                     Region: PH1_TAPP1_2; cd13270"
                     /db_xref="CDD:270089"
     misc_feature    848..1192
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, C-terminal repeat;
                     Region: PH2_TAPP1_2; cd13271"
                     /db_xref="CDD:270090"
     misc_feature    order(893..895,899..904,926..928,959..961,989..994,
                     1094..1096)
                     /gene="PLEKHA2"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270090"
ORIGIN      
        1 agttctgact gtcacgtggg gttttctaac ccttgggcac cgtgtcgcac ttctgcagtg
       61 ccttgtgcgt cccggtgggg tgtagctgcc tgttggaggg tgcttttcct cttggggagg
      121 agaacagagc tcctgccttt tcctttggct cttcagacag acggaaggga gccaggagag
      181 gggaggcctg tctgagggtg cggaatgtct caaatcgccg gaccctcttc tgcaatcagg
      241 aaagtgttcc gggtaatgtg agcagagccc aggaatgcct tatgtggatc ggcagaaccg
      301 aatctgtggg tttctggaca tcgaggagaa tgagaacagc ggcaagtttc tgcggaggta
      361 ctttattctg gacacgcagg ccaactgcct tctctggtac atggacaacc cccagaacct
      421 ggcagttggg gcaggagccg tcggatcttt gcagctgacc tacatctcga aggtgagcat
      481 agccacccca aagcagaaac ccaagactcc gttttgcttt gtcatcaacg ccctctcgca
      541 gaggtatttt cttcaagcca atgaccagaa agatctgaag gactgggtcg aagccctgaa
      601 ccaagccagc aaaatcactg tacccaaagt tgggaacttg cccctgacga ccgaagttgt
      661 caagagccta gcaactcctc tggccctgga gaagaagccc caggtggcct acaagacaga
      721 gatcatcgga ggcgtggtgg tacacacgcc catcaaccag aacggtgggg atgggcagga
      781 agggagtgag cctggctccc acgccatcct tcgaaggtct cagagttaca tccccacgac
      841 aggctgccgt gtccccaccg ggccccccct cattaagagc ggctattgtg tgaagcaagg
      901 gaatgtgcgc aagagctgga aacggcgctt ctttgcgctg gacgacttta ccatctgcta
      961 cttcaagtgt gagcaggacc gagaaccact gcgtaccata ttcctcaagg atgttctcaa
     1021 gacccacgag tgtttggtca agtctggcga cctgctgatg agggacaacc tgtttgaaat
     1081 aataaccagc tccaggacct tctacgtgca ggcagacagt ccagaagaca tgcacagctg
     1141 gattaaggag atcggggcag ctgtccaggc cctcaagtgc caccccagag aaatgtcctt
     1201 ttctcgatcc atttctttga cccgctctgg aagctccagc ctctcagggg ggcccaactc
     1261 tgtcttgtgc agagggcggc cacctctgga ggagagaagg gccctctgca aagccccctc
     1321 cgtggcttcc tcctggcagc cctggacacc tgtcccccag gctggggaaa agctgctgcc
     1381 cactgaagag actcctgagg actctttttt catgcctcga cttggggaga gcagtacttc
     1441 tggggtgctg cccagctccc ggataaggca cagatcggag ccccagcacc ccaaggagaa
     1501 gccatttgtg ttcaacctcg atgatgaaaa catacggacc tctgatgtgt gatgaggcgc
     1561 agtgcccagg agggaagggg aggactcaga tgtccaaggg gccgtgactc agtttctcca
     1621 cctgctggag gacagtcgga ggccttcctg gcactcacat ccctgtggag ctctcttggg
     1681 ggaggggagc atccagctgt tttttttttt tttttaaatc aatgcagtgt ttttaattcg
     1741 ggaaagtcac caggttagac ctgtaggctt gctcagtgga gagcagggtg cctcttacct
     1801 tgactcttcc atggtccacc tggtgagtgg aggttggaag gccaatttca tccctaacca
     1861 agtttttgtt ccttgtcctc gtcttattag tttcttccct ttgttttcag gccaggtgca
     1921 gaaccttgag gccagtcatc tggttttatc ctattgctgt tcattggctg aagtttgact
     1981 gtgaagtagg agggtgggaa ctcacccaac tgaaactggg ggaagcagtg ggggacaccc
     2041 aggctccagc ttggctggga tacattctga ggggaggtgt taaaatctgg gcgctggtcg
     2101 gggggggccc tgaatgtcga ccagggcaga ttcccccaac ctccggggga cctccatggg
     2161 ggaagaaata gggacctctt gtaaggaatg ggagaatgca ctcccaaccc cagtgcatca
     2221 tccagtttcg ggaattactc tgttctcttt gagatgttct ttcaccccag atactgtcgc
     2281 tgtgagagac agacctgccc accctgttgc tgtgtcaggc ccttaggatg ggtttatcag
     2341 tgttcagtgc tgagaacaga acagacattg cccttgatat ggcgttactt ggaatgtgtg
     2401 gagggttgat gagtgtatga taattcactt gtgtgataca tcacatctgt attttagagt
     2461 ttgagagttg ctttaaagca ggtgctggga agagatggag ttgagttcat ccagctaaaa
     2521 atttttgatc catgttttcc agacagaaga aaaggtctct tttcgcaaag acagatgatc
     2581 ttgggttctt gcctctcagc tcttctttca tgggccgata gtagtctgat tttaagtgct
     2641 gtatattgta taccttggca gatttgcttt ctttctgttc tttgtgttgc cctttgggtg
     2701 atgcctcgtg tctgtacttg catgatgaaa tcttgtcgtc tgacgaggtt caacgttcat
     2761 aacagtgagg agataacaaa gataatcttg agagatattt atatctttaa taaaatagaa
     2821 actgtgcaga gaaacattga tttacagcct atgcattgct ggttagagat ttcccaggta
     2881 gaagagcata gattgtattt cccatcccgt attttaggat gtaccttctt ccatttgaca
     2941 agagatccta tttccagggt ccctgggaga aattatctgt ccagcttatg tggtgaactg
     3001 ctaccaaggt tccctaaagg gagggagctt aactcagttc tatctagaac tctgtatcag
     3061 ctagatcagt taattttgtc tttaaattaa gaattaacga gtagaggagg agactgtgat
     3121 cagaaaatcc ttagtggctt gagggaaatc ttctgtttgt ttcgggcagt gtagtttcct
     3181 tgaagtctgt gtcaggttga gaacttttcg accgtacttc tttggagata attttcactt
     3241 aaattgtttg ccctagtggt cctggtataa aaaaggaaat ctgctctaga tttctctctc
     3301 tctctttttt tcccttcttt tctgcagcct cctgtatact tttgtcctta gaaatccctg
     3361 gtttggaggt tatttattta tgagtgatca aggtgacaac atacttcaag tagcctggtt
     3421 tcaagaaggc attacgaatt cttaaagttc tttgtctcag gtttcatctt cagattttcc
     3481 tcaagaaaat tctttggcta ggtgaaagaa agtgcacaga gaaatggaac taacaaagat
     3541 aaattaggac cttctgagat ctctgtaaac attccctgac tcatggaaag atgtcatctc
     3601 ctggtgttta acttgtgaaa atctacccat ttcttcctct tttaaataaa ctctctgctc
     3661 gattactact gctgaattaa ttggccatta tggtaagctg gtatgtttct tattcagtaa
     3721 ggtttatttt gagaatgtat taaattaaac atgcttataa atccagattg tatgatcata
     3781 atagagggga aacaaggatt ctagttggca gatacttggg aattccaagt tagagcgttg
     3841 ttaatgtagt tccaacacca gataaataga attatcttca gtgaagctta gaggcattct
     3901 cattgccaaa ccttatctca gaattccttt cgagctccta tttcttagct tctggttaat
     3961 ttcacatcac accttttaat gttactacac gtgtgagcca aagatggtgc atatacgacc
     4021 aaagcatttg gtgtcaaatg tgaaaaatgg aaccaaatgg aaaaaacaag gaggggatgc
     4081 aatatcgatt agtagttaag tgcataggct ctggaataaa cctgttcatt ttgtttgttt
     4141 taaaaacagg aaccaaaaaa aggtactgca tttttttgtg tgtgtggaat aaaaacgttc
     4201 tctgagttgt gctgttttca taagactttt gacatggtct tgacccactg tgtgtaacag
     4261 cttcaggtgt ctccccatag gtgaactatt attgtccact gttcttgaaa gttaaggaat
     4321 tgcttgctca gggtcagctg atggctggtg aacgtagttt ggccttttgc attctgtgag
     4381 atgacagttg tactaaggtg tccatcaggt aaagcgatct caggtgaaaa ttgcagagtt
     4441 acacatctgt ttctgaatag aatgctgagc tcccatgaga aagagtccaa cttcatagtt
     4501 cacttgaagc agaaggtggt ttgttgtttt atttttttcc ccctgaatgt aactgtgctc
     4561 tgatacggtc tgaaaggatc caataaataa gtggcagatt cagtagttga gcagtgggat
     4621 ttgatatgtt tgttttcact gttaaccaga taaataggca taaggaagta gcagagtttt
     4681 ggaaactgag tttcccaaat cagctttgtt tataaagttt gaacatgtca gaaacggaca
     4741 gatttattac atcttttcta ccaatgtcac tttttttcct tagtcccttt ttctctctgt
     4801 tactgcctgc agtagtgaat tacagtcact catgctcggt agagtttcaa taaagagatt
     4861 atttggcccc caaacatact gtttgacccc ttcccccgct gctccccaag gtgtagcatg
     4921 attctgtgtt ttgaaccagt atgtttcagc tgtgaaatgc acttgtaggc tgagctgagt
     4981 gcatggaaac tcttacgctt ctcattttaa gcgatctcct acttggtatg tagcaaaaaa
     5041 taattttcta aaactgtttt gtcgcttgtt ttgtaataaa aaccatgtga aatactgaa
//
LOCUS       XM_032618608            4977 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology domain containing A2
            (PLEKHA2), transcript variant X4, mRNA.
ACCESSION   XM_032618608
VERSION     XM_032618608.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4977
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4977
                     /gene="PLEKHA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746859"
     CDS             153..1430
                     /gene="PLEKHA2"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family A
                     member 2 isoform X1"
                     /protein_id="XP_032474499.1"
                     /db_xref="GeneID:116746859"
                     /translation="MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANCLLWYMD
                     NPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLK
                     DWVEALNQASKITVPKVGNLPLTTEVVKSLATPLALEKKPQVAYKTEIIGGVVVHTPI
                     NQNGGDGQEGSEPGSHAILRRSQSYIPTTGCRVPTGPPLIKSGYCVKQGNVRKSWKRR
                     FFALDDFTICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTF
                     YVQADSPEDMHSWIKEIGAAVQALKCHPREMSFSRSISLTRSGSSSLSGGPNSVLCRG
                     RPPLEERRALCKAPSVASSWQPWTPVPQAGEKLLPTEETPEDSFFMPRLGESSTSGVL
                     PSSRIRHRSEPQHPKEKPFVFNLDDENIRTSDV"
     misc_feature    153..506
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, N-terminal repeat;
                     Region: PH1_TAPP1_2; cd13270"
                     /db_xref="CDD:270089"
     misc_feature    726..1070
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, C-terminal repeat;
                     Region: PH2_TAPP1_2; cd13271"
                     /db_xref="CDD:270090"
     misc_feature    order(771..773,777..782,804..806,837..839,867..872,
                     972..974)
                     /gene="PLEKHA2"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270090"
ORIGIN      
        1 ggcttgcctg gtatttgccg aaagtgccgg atcactaggg agccgggagc agcagggcct
       61 cgatctccgg atgtgcatcc agctggcgct tcattgatct ccggtcttct tcatggggca
      121 ggtgggcagg gtaatgtgag cagagcccag gaatgcctta tgtggatcgg cagaaccgaa
      181 tctgtgggtt tctggacatc gaggagaatg agaacagcgg caagtttctg cggaggtact
      241 ttattctgga cacgcaggcc aactgccttc tctggtacat ggacaacccc cagaacctgg
      301 cagttggggc aggagccgtc ggatctttgc agctgaccta catctcgaag gtgagcatag
      361 ccaccccaaa gcagaaaccc aagactccgt tttgctttgt catcaacgcc ctctcgcaga
      421 ggtattttct tcaagccaat gaccagaaag atctgaagga ctgggtcgaa gccctgaacc
      481 aagccagcaa aatcactgta cccaaagttg ggaacttgcc cctgacgacc gaagttgtca
      541 agagcctagc aactcctctg gccctggaga agaagcccca ggtggcctac aagacagaga
      601 tcatcggagg cgtggtggta cacacgccca tcaaccagaa cggtggggat gggcaggaag
      661 ggagtgagcc tggctcccac gccatccttc gaaggtctca gagttacatc cccacgacag
      721 gctgccgtgt ccccaccggg ccccccctca ttaagagcgg ctattgtgtg aagcaaggga
      781 atgtgcgcaa gagctggaaa cggcgcttct ttgcgctgga cgactttacc atctgctact
      841 tcaagtgtga gcaggaccga gaaccactgc gtaccatatt cctcaaggat gttctcaaga
      901 cccacgagtg tttggtcaag tctggcgacc tgctgatgag ggacaacctg tttgaaataa
      961 taaccagctc caggaccttc tacgtgcagg cagacagtcc agaagacatg cacagctgga
     1021 ttaaggagat cggggcagct gtccaggccc tcaagtgcca ccccagagaa atgtcctttt
     1081 ctcgatccat ttctttgacc cgctctggaa gctccagcct ctcagggggg cccaactctg
     1141 tcttgtgcag agggcggcca cctctggagg agagaagggc cctctgcaaa gccccctccg
     1201 tggcttcctc ctggcagccc tggacacctg tcccccaggc tggggaaaag ctgctgccca
     1261 ctgaagagac tcctgaggac tcttttttca tgcctcgact tggggagagc agtacttctg
     1321 gggtgctgcc cagctcccgg ataaggcaca gatcggagcc ccagcacccc aaggagaagc
     1381 catttgtgtt caacctcgat gatgaaaaca tacggacctc tgatgtgtga tgaggcgcag
     1441 tgcccaggag ggaaggggag gactcagatg tccaaggggc cgtgactcag tttctccacc
     1501 tgctggagga cagtcggagg ccttcctggc actcacatcc ctgtggagct ctcttggggg
     1561 aggggagcat ccagctgttt tttttttttt tttaaatcaa tgcagtgttt ttaattcggg
     1621 aaagtcacca ggttagacct gtaggcttgc tcagtggaga gcagggtgcc tcttaccttg
     1681 actcttccat ggtccacctg gtgagtggag gttggaaggc caatttcatc cctaaccaag
     1741 tttttgttcc ttgtcctcgt cttattagtt tcttcccttt gttttcaggc caggtgcaga
     1801 accttgaggc cagtcatctg gttttatcct attgctgttc attggctgaa gtttgactgt
     1861 gaagtaggag ggtgggaact cacccaactg aaactggggg aagcagtggg ggacacccag
     1921 gctccagctt ggctgggata cattctgagg ggaggtgtta aaatctgggc gctggtcggg
     1981 gggggccctg aatgtcgacc agggcagatt cccccaacct ccgggggacc tccatggggg
     2041 aagaaatagg gacctcttgt aaggaatggg agaatgcact cccaacccca gtgcatcatc
     2101 cagtttcggg aattactctg ttctctttga gatgttcttt caccccagat actgtcgctg
     2161 tgagagacag acctgcccac cctgttgctg tgtcaggccc ttaggatggg tttatcagtg
     2221 ttcagtgctg agaacagaac agacattgcc cttgatatgg cgttacttgg aatgtgtgga
     2281 gggttgatga gtgtatgata attcacttgt gtgatacatc acatctgtat tttagagttt
     2341 gagagttgct ttaaagcagg tgctgggaag agatggagtt gagttcatcc agctaaaaat
     2401 ttttgatcca tgttttccag acagaagaaa aggtctcttt tcgcaaagac agatgatctt
     2461 gggttcttgc ctctcagctc ttctttcatg ggccgatagt agtctgattt taagtgctgt
     2521 atattgtata ccttggcaga tttgctttct ttctgttctt tgtgttgccc tttgggtgat
     2581 gcctcgtgtc tgtacttgca tgatgaaatc ttgtcgtctg acgaggttca acgttcataa
     2641 cagtgaggag ataacaaaga taatcttgag agatatttat atctttaata aaatagaaac
     2701 tgtgcagaga aacattgatt tacagcctat gcattgctgg ttagagattt cccaggtaga
     2761 agagcataga ttgtatttcc catcccgtat tttaggatgt accttcttcc atttgacaag
     2821 agatcctatt tccagggtcc ctgggagaaa ttatctgtcc agcttatgtg gtgaactgct
     2881 accaaggttc cctaaaggga gggagcttaa ctcagttcta tctagaactc tgtatcagct
     2941 agatcagtta attttgtctt taaattaaga attaacgagt agaggaggag actgtgatca
     3001 gaaaatcctt agtggcttga gggaaatctt ctgtttgttt cgggcagtgt agtttccttg
     3061 aagtctgtgt caggttgaga acttttcgac cgtacttctt tggagataat tttcacttaa
     3121 attgtttgcc ctagtggtcc tggtataaaa aaggaaatct gctctagatt tctctctctc
     3181 tctttttttc ccttcttttc tgcagcctcc tgtatacttt tgtccttaga aatccctggt
     3241 ttggaggtta tttatttatg agtgatcaag gtgacaacat acttcaagta gcctggtttc
     3301 aagaaggcat tacgaattct taaagttctt tgtctcaggt ttcatcttca gattttcctc
     3361 aagaaaattc tttggctagg tgaaagaaag tgcacagaga aatggaacta acaaagataa
     3421 attaggacct tctgagatct ctgtaaacat tccctgactc atggaaagat gtcatctcct
     3481 ggtgtttaac ttgtgaaaat ctacccattt cttcctcttt taaataaact ctctgctcga
     3541 ttactactgc tgaattaatt ggccattatg gtaagctggt atgtttctta ttcagtaagg
     3601 tttattttga gaatgtatta aattaaacat gcttataaat ccagattgta tgatcataat
     3661 agaggggaaa caaggattct agttggcaga tacttgggaa ttccaagtta gagcgttgtt
     3721 aatgtagttc caacaccaga taaatagaat tatcttcagt gaagcttaga ggcattctca
     3781 ttgccaaacc ttatctcaga attcctttcg agctcctatt tcttagcttc tggttaattt
     3841 cacatcacac cttttaatgt tactacacgt gtgagccaaa gatggtgcat atacgaccaa
     3901 agcatttggt gtcaaatgtg aaaaatggaa ccaaatggaa aaaacaagga ggggatgcaa
     3961 tatcgattag tagttaagtg cataggctct ggaataaacc tgttcatttt gtttgtttta
     4021 aaaacaggaa ccaaaaaaag gtactgcatt tttttgtgtg tgtggaataa aaacgttctc
     4081 tgagttgtgc tgttttcata agacttttga catggtcttg acccactgtg tgtaacagct
     4141 tcaggtgtct ccccataggt gaactattat tgtccactgt tcttgaaagt taaggaattg
     4201 cttgctcagg gtcagctgat ggctggtgaa cgtagtttgg ccttttgcat tctgtgagat
     4261 gacagttgta ctaaggtgtc catcaggtaa agcgatctca ggtgaaaatt gcagagttac
     4321 acatctgttt ctgaatagaa tgctgagctc ccatgagaaa gagtccaact tcatagttca
     4381 cttgaagcag aaggtggttt gttgttttat ttttttcccc ctgaatgtaa ctgtgctctg
     4441 atacggtctg aaaggatcca ataaataagt ggcagattca gtagttgagc agtgggattt
     4501 gatatgtttg ttttcactgt taaccagata aataggcata aggaagtagc agagttttgg
     4561 aaactgagtt tcccaaatca gctttgttta taaagtttga acatgtcaga aacggacaga
     4621 tttattacat cttttctacc aatgtcactt tttttcctta gtcccttttt ctctctgtta
     4681 ctgcctgcag tagtgaatta cagtcactca tgctcggtag agtttcaata aagagattat
     4741 ttggccccca aacatactgt ttgacccctt cccccgctgc tccccaaggt gtagcatgat
     4801 tctgtgtttt gaaccagtat gtttcagctg tgaaatgcac ttgtaggctg agctgagtgc
     4861 atggaaactc ttacgcttct cattttaagc gatctcctac ttggtatgta gcaaaaaata
     4921 attttctaaa actgttttgt cgcttgtttt gtaataaaaa ccatgtgaaa tactgaa
//
LOCUS       XM_032618609            6978 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology domain containing A2
            (PLEKHA2), transcript variant X5, mRNA.
ACCESSION   XM_032618609
VERSION     XM_032618609.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6978
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6978
                     /gene="PLEKHA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746859"
     CDS             2154..3431
                     /gene="PLEKHA2"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family A
                     member 2 isoform X1"
                     /protein_id="XP_032474500.1"
                     /db_xref="GeneID:116746859"
                     /translation="MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANCLLWYMD
                     NPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLK
                     DWVEALNQASKITVPKVGNLPLTTEVVKSLATPLALEKKPQVAYKTEIIGGVVVHTPI
                     NQNGGDGQEGSEPGSHAILRRSQSYIPTTGCRVPTGPPLIKSGYCVKQGNVRKSWKRR
                     FFALDDFTICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTF
                     YVQADSPEDMHSWIKEIGAAVQALKCHPREMSFSRSISLTRSGSSSLSGGPNSVLCRG
                     RPPLEERRALCKAPSVASSWQPWTPVPQAGEKLLPTEETPEDSFFMPRLGESSTSGVL
                     PSSRIRHRSEPQHPKEKPFVFNLDDENIRTSDV"
     misc_feature    2154..2507
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, N-terminal repeat;
                     Region: PH1_TAPP1_2; cd13270"
                     /db_xref="CDD:270089"
     misc_feature    2727..3071
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, C-terminal repeat;
                     Region: PH2_TAPP1_2; cd13271"
                     /db_xref="CDD:270090"
     misc_feature    order(2772..2774,2778..2783,2805..2807,2838..2840,
                     2868..2873,2973..2975)
                     /gene="PLEKHA2"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270090"
ORIGIN      
        1 atgtgggatc ttcccggacc agggcacgaa cccgtgtccc ctgcatcggc aggtggactt
       61 tcaaccactg cgccaccagg gaaaccctag agtgtttttt tttttttaat gctagcattg
      121 ttatattgtg aatttgcact agaaatggaa aacactgggg agattggcgt gctttggaaa
      181 gacagggtgc tgagtgcggt gggccgaggt cccttgctgg gcacagagtc tgtgctcatt
      241 cctgtccgtg tgttgtgatg gcctaggagc tcctcgctgg gtggtttcgt tacggaatta
      301 gagcgaaggt ggaggggctg gcctgagaga gtactgtccg gtgctctgac acagccagaa
      361 cactttgcac gctgccccag gagatgggcc gagagtcatt gtccagttga gggacccagg
      421 atacggtggg ggtgggcatg gggcaactcc tggggcacat cacccagtgt caccctcccc
      481 ccagtatttt tacactgggg aactcggtta aaatgaaatt taagataaca agtgatttta
      541 aagtttaaaa gacaggctag aactgtataa ccgaggagtg tcatgcaagt tggaagggac
      601 atttcgaaga ggtgatagac agtatgtgta tgtgcatcag ggtgtcctcc cccttatgga
      661 tcggttgctg gcacttcctt ttctcccctc cctgcctggt tttcagggct gggggggtgg
      721 tggcagagtt aatcccatcc gaggagcctc tctgggaaaa aggggaggag ccagcggaga
      781 cttggacgat gctggggggc aggttgaaga agcagggaga ggggattggg ggccggtggc
      841 ggctggctct ctgtaccagc agctgctggg acaagggacg cacccacggg atgaggatgc
      901 actgtcagag gaccgggctc gggacctcag gtttgtgtgt ctgcgccatc tttgggtttg
      961 tcgcttctgt gtgggtgggc ttgttcgttc taaccacact tcccgtgtga tgcttggtgc
     1021 tcctgccgcc catcctgccc ccacccacct cccacatgct gatgagccct gtgactcagc
     1081 tgcttctcag gacatcacag cagctttttt tttctgggct agaaccacag tcaggagatg
     1141 tgtaaccaga tttcttcttt ttatcatctt tccttttggt ccctgagggt cctctcccac
     1201 catgcaagtg ggaagccccc tctacaagag tagactgttg gaggattgtg gaaacagtgg
     1261 cttctctggc ctctgacttg agaaaagaca ggccccttgg gctgaagagg ggacattgga
     1321 aaggcagcgt gaagtcgggt gggtgctgtg cttactggct gcacccagag acggttggct
     1381 ttgttatcca ctgcaattta tacccttccc cttagggatg tcccgggtgg cgacagcgct
     1441 gaatccccca gaacgtctgt ctctgtggct gcgctggcat caggggaatt tgctgagttt
     1501 tcttgggggt tgggtgcacc ctcactgcag ggctgaccca gcctttctgc ctgggactcc
     1561 tgatttcccc tgatttccct gggggaagct gcatcctttc tgagggatcc gcttcctccc
     1621 caacctgcgc tgggcctctc cctccccatt tttgacccta ccccttggct tgaacccatc
     1681 tttctccctt tcctgaactc actttggcca gtggtgagac gggagctggg atggaggctt
     1741 agtttgggga ggtacagaga agctggggat ctggccacag ggacctctga ccacgtgatg
     1801 cactgcgtgc aggggtgtct cccccctggc cctcaccctc ggggtcctcc tgtcccactg
     1861 tgctgctact tcgttctcct ctgccctctt tctaaacctc ctctttccac tttttctcct
     1921 tttctctcct cctattttac ttctttctag ctgtgctgtt tcatctgtgt cctgtttccc
     1981 tgcgtgcttt cctttttgtc tcccatcatt gcccagtgag tcgccgtggg atcccctgac
     2041 ccgcctccct cctgactgag tcatctgccc tgttgggatt ctgcctgacc ttacctggaa
     2101 tcaagggatt cactatttcc tggcatcctg ggtaatgtga gcagagccca ggaatgcctt
     2161 atgtggatcg gcagaaccga atctgtgggt ttctggacat cgaggagaat gagaacagcg
     2221 gcaagtttct gcggaggtac tttattctgg acacgcaggc caactgcctt ctctggtaca
     2281 tggacaaccc ccagaacctg gcagttgggg caggagccgt cggatctttg cagctgacct
     2341 acatctcgaa ggtgagcata gccaccccaa agcagaaacc caagactccg ttttgctttg
     2401 tcatcaacgc cctctcgcag aggtattttc ttcaagccaa tgaccagaaa gatctgaagg
     2461 actgggtcga agccctgaac caagccagca aaatcactgt acccaaagtt gggaacttgc
     2521 ccctgacgac cgaagttgtc aagagcctag caactcctct ggccctggag aagaagcccc
     2581 aggtggccta caagacagag atcatcggag gcgtggtggt acacacgccc atcaaccaga
     2641 acggtgggga tgggcaggaa gggagtgagc ctggctccca cgccatcctt cgaaggtctc
     2701 agagttacat ccccacgaca ggctgccgtg tccccaccgg gccccccctc attaagagcg
     2761 gctattgtgt gaagcaaggg aatgtgcgca agagctggaa acggcgcttc tttgcgctgg
     2821 acgactttac catctgctac ttcaagtgtg agcaggaccg agaaccactg cgtaccatat
     2881 tcctcaagga tgttctcaag acccacgagt gtttggtcaa gtctggcgac ctgctgatga
     2941 gggacaacct gtttgaaata ataaccagct ccaggacctt ctacgtgcag gcagacagtc
     3001 cagaagacat gcacagctgg attaaggaga tcggggcagc tgtccaggcc ctcaagtgcc
     3061 accccagaga aatgtccttt tctcgatcca tttctttgac ccgctctgga agctccagcc
     3121 tctcaggggg gcccaactct gtcttgtgca gagggcggcc acctctggag gagagaaggg
     3181 ccctctgcaa agccccctcc gtggcttcct cctggcagcc ctggacacct gtcccccagg
     3241 ctggggaaaa gctgctgccc actgaagaga ctcctgagga ctcttttttc atgcctcgac
     3301 ttggggagag cagtacttct ggggtgctgc ccagctcccg gataaggcac agatcggagc
     3361 cccagcaccc caaggagaag ccatttgtgt tcaacctcga tgatgaaaac atacggacct
     3421 ctgatgtgtg atgaggcgca gtgcccagga gggaagggga ggactcagat gtccaagggg
     3481 ccgtgactca gtttctccac ctgctggagg acagtcggag gccttcctgg cactcacatc
     3541 cctgtggagc tctcttgggg gaggggagca tccagctgtt tttttttttt ttttaaatca
     3601 atgcagtgtt tttaattcgg gaaagtcacc aggttagacc tgtaggcttg ctcagtggag
     3661 agcagggtgc ctcttacctt gactcttcca tggtccacct ggtgagtgga ggttggaagg
     3721 ccaatttcat ccctaaccaa gtttttgttc cttgtcctcg tcttattagt ttcttccctt
     3781 tgttttcagg ccaggtgcag aaccttgagg ccagtcatct ggttttatcc tattgctgtt
     3841 cattggctga agtttgactg tgaagtagga gggtgggaac tcacccaact gaaactgggg
     3901 gaagcagtgg gggacaccca ggctccagct tggctgggat acattctgag gggaggtgtt
     3961 aaaatctggg cgctggtcgg ggggggccct gaatgtcgac cagggcagat tcccccaacc
     4021 tccgggggac ctccatgggg gaagaaatag ggacctcttg taaggaatgg gagaatgcac
     4081 tcccaacccc agtgcatcat ccagtttcgg gaattactct gttctctttg agatgttctt
     4141 tcaccccaga tactgtcgct gtgagagaca gacctgccca ccctgttgct gtgtcaggcc
     4201 cttaggatgg gtttatcagt gttcagtgct gagaacagaa cagacattgc ccttgatatg
     4261 gcgttacttg gaatgtgtgg agggttgatg agtgtatgat aattcacttg tgtgatacat
     4321 cacatctgta ttttagagtt tgagagttgc tttaaagcag gtgctgggaa gagatggagt
     4381 tgagttcatc cagctaaaaa tttttgatcc atgttttcca gacagaagaa aaggtctctt
     4441 ttcgcaaaga cagatgatct tgggttcttg cctctcagct cttctttcat gggccgatag
     4501 tagtctgatt ttaagtgctg tatattgtat accttggcag atttgctttc tttctgttct
     4561 ttgtgttgcc ctttgggtga tgcctcgtgt ctgtacttgc atgatgaaat cttgtcgtct
     4621 gacgaggttc aacgttcata acagtgagga gataacaaag ataatcttga gagatattta
     4681 tatctttaat aaaatagaaa ctgtgcagag aaacattgat ttacagccta tgcattgctg
     4741 gttagagatt tcccaggtag aagagcatag attgtatttc ccatcccgta ttttaggatg
     4801 taccttcttc catttgacaa gagatcctat ttccagggtc cctgggagaa attatctgtc
     4861 cagcttatgt ggtgaactgc taccaaggtt ccctaaaggg agggagctta actcagttct
     4921 atctagaact ctgtatcagc tagatcagtt aattttgtct ttaaattaag aattaacgag
     4981 tagaggagga gactgtgatc agaaaatcct tagtggcttg agggaaatct tctgtttgtt
     5041 tcgggcagtg tagtttcctt gaagtctgtg tcaggttgag aacttttcga ccgtacttct
     5101 ttggagataa ttttcactta aattgtttgc cctagtggtc ctggtataaa aaaggaaatc
     5161 tgctctagat ttctctctct ctcttttttt cccttctttt ctgcagcctc ctgtatactt
     5221 ttgtccttag aaatccctgg tttggaggtt atttatttat gagtgatcaa ggtgacaaca
     5281 tacttcaagt agcctggttt caagaaggca ttacgaattc ttaaagttct ttgtctcagg
     5341 tttcatcttc agattttcct caagaaaatt ctttggctag gtgaaagaaa gtgcacagag
     5401 aaatggaact aacaaagata aattaggacc ttctgagatc tctgtaaaca ttccctgact
     5461 catggaaaga tgtcatctcc tggtgtttaa cttgtgaaaa tctacccatt tcttcctctt
     5521 ttaaataaac tctctgctcg attactactg ctgaattaat tggccattat ggtaagctgg
     5581 tatgtttctt attcagtaag gtttattttg agaatgtatt aaattaaaca tgcttataaa
     5641 tccagattgt atgatcataa tagaggggaa acaaggattc tagttggcag atacttggga
     5701 attccaagtt agagcgttgt taatgtagtt ccaacaccag ataaatagaa ttatcttcag
     5761 tgaagcttag aggcattctc attgccaaac cttatctcag aattcctttc gagctcctat
     5821 ttcttagctt ctggttaatt tcacatcaca ccttttaatg ttactacacg tgtgagccaa
     5881 agatggtgca tatacgacca aagcatttgg tgtcaaatgt gaaaaatgga accaaatgga
     5941 aaaaacaagg aggggatgca atatcgatta gtagttaagt gcataggctc tggaataaac
     6001 ctgttcattt tgtttgtttt aaaaacagga accaaaaaaa ggtactgcat ttttttgtgt
     6061 gtgtggaata aaaacgttct ctgagttgtg ctgttttcat aagacttttg acatggtctt
     6121 gacccactgt gtgtaacagc ttcaggtgtc tccccatagg tgaactatta ttgtccactg
     6181 ttcttgaaag ttaaggaatt gcttgctcag ggtcagctga tggctggtga acgtagtttg
     6241 gccttttgca ttctgtgaga tgacagttgt actaaggtgt ccatcaggta aagcgatctc
     6301 aggtgaaaat tgcagagtta cacatctgtt tctgaataga atgctgagct cccatgagaa
     6361 agagtccaac ttcatagttc acttgaagca gaaggtggtt tgttgtttta tttttttccc
     6421 cctgaatgta actgtgctct gatacggtct gaaaggatcc aataaataag tggcagattc
     6481 agtagttgag cagtgggatt tgatatgttt gttttcactg ttaaccagat aaataggcat
     6541 aaggaagtag cagagttttg gaaactgagt ttcccaaatc agctttgttt ataaagtttg
     6601 aacatgtcag aaacggacag atttattaca tcttttctac caatgtcact ttttttcctt
     6661 agtccctttt tctctctgtt actgcctgca gtagtgaatt acagtcactc atgctcggta
     6721 gagtttcaat aaagagatta tttggccccc aaacatactg tttgacccct tcccccgctg
     6781 ctccccaagg tgtagcatga ttctgtgttt tgaaccagta tgtttcagct gtgaaatgca
     6841 cttgtaggct gagctgagtg catggaaact cttacgcttc tcattttaag cgatctccta
     6901 cttggtatgt agcaaaaaat aattttctaa aactgttttg tcgcttgttt tgtaataaaa
     6961 accatgtgaa atactgaa
//
LOCUS       XM_032618610            5559 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology domain containing A2
            (PLEKHA2), transcript variant X6, mRNA.
ACCESSION   XM_032618610
VERSION     XM_032618610.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5559
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5559
                     /gene="PLEKHA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 18 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746859"
     CDS             565..1680
                     /gene="PLEKHA2"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family A
                     member 2 isoform X2"
                     /protein_id="XP_032474501.1"
                     /db_xref="GeneID:116746859"
                     /translation="MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANCLLWYMD
                     NPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLK
                     DWVEALNQASKITVPKVGNLPLTTEVVKSLATPLALEKKPQVAYKTEIIGGVVVHTPI
                     NQNGGDGQEGSEPGSHAILRRSQSYIPTTGCRVPTGPPLIKSGYCVKQGNVRKSWKRR
                     FFALDDFTICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTF
                     YVQVIKAHRTAIKPQTAVTHLIPFVPLTSKTALKDRNPTFPFEPSTRNMYTLKQTRKR
                     GRQTVQKTCTAGLRRSGQLSRPSSATPEKCPFLDPFL"
     misc_feature    565..918
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, N-terminal repeat;
                     Region: PH1_TAPP1_2; cd13270"
                     /db_xref="CDD:270089"
     misc_feature    1138..1428
                     /gene="PLEKHA2"
                     /note="Tandem PH-domain-containing proteins 1 and 2
                     Pleckstrin homology (PH) domain, C-terminal repeat;
                     Region: PH2_TAPP1_2; cd13271"
                     /db_xref="CDD:270090"
     misc_feature    order(1183..1185,1189..1194,1216..1218,1249..1251,
                     1279..1284,1384..1386)
                     /gene="PLEKHA2"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270090"
ORIGIN      
        1 tgggaagaat aaacggggta aagagtgagc ccgcgggccg gctcgtctcc ctgtttctag
       61 gatgccctca tccccgggcc cctttcccac tcggacacct gctgcccggg gcctgcgtcg
      121 gaagcagggc ctcccccggc gcggccgagg tggtcccggc gcgcagcctc tggggccgcc
      181 tccgggcgcc ccgcccccgc cgagtccgcg cagcccgcgc gcccggccgc gccccctccc
      241 agcccgcggc gccccggcac ccctctccgc ccccggcggg ctcggcggag cattgtactc
      301 acatccgggg ctgggttttg ctttaatgcg aaacgtaatt aacccggaaa aaagagccga
      361 aggacaagag aggaggaggg agggaggagg ggagggggag aggagcgaga ggcgcgagag
      421 accccgagag tttggcggcg acagacatcc cccgagagcg acggcccgcg gggccccaga
      481 ggcgcttccc agcccgatgt aacccacgca ccctgcccga gccccggccc tgcgcggcgg
      541 gggtaatgtg agcagagccc aggaatgcct tatgtggatc ggcagaaccg aatctgtggg
      601 tttctggaca tcgaggagaa tgagaacagc ggcaagtttc tgcggaggta ctttattctg
      661 gacacgcagg ccaactgcct tctctggtac atggacaacc cccagaacct ggcagttggg
      721 gcaggagccg tcggatcttt gcagctgacc tacatctcga aggtgagcat agccacccca
      781 aagcagaaac ccaagactcc gttttgcttt gtcatcaacg ccctctcgca gaggtatttt
      841 cttcaagcca atgaccagaa agatctgaag gactgggtcg aagccctgaa ccaagccagc
      901 aaaatcactg tacccaaagt tgggaacttg cccctgacga ccgaagttgt caagagccta
      961 gcaactcctc tggccctgga gaagaagccc caggtggcct acaagacaga gatcatcgga
     1021 ggcgtggtgg tacacacgcc catcaaccag aacggtgggg atgggcagga agggagtgag
     1081 cctggctccc acgccatcct tcgaaggtct cagagttaca tccccacgac aggctgccgt
     1141 gtccccaccg ggccccccct cattaagagc ggctattgtg tgaagcaagg gaatgtgcgc
     1201 aagagctgga aacggcgctt ctttgcgctg gacgacttta ccatctgcta cttcaagtgt
     1261 gagcaggacc gagaaccact gcgtaccata ttcctcaagg atgttctcaa gacccacgag
     1321 tgtttggtca agtctggcga cctgctgatg agggacaacc tgtttgaaat aataaccagc
     1381 tccaggacct tctacgtgca ggtaatcaaa gctcatcgga ctgcaataaa accacagact
     1441 gcagtgacgc atttaatacc ctttgttcct ctcacctcaa aaactgccct caaggacaga
     1501 aaccctactt ttccttttga accaagcacc agaaacatgt acacacttaa gcagaccagg
     1561 aagagaggaa ggcagacagt ccagaagaca tgcacagctg gattaaggag atcggggcag
     1621 ctgtccaggc cctcaagtgc caccccagag aaatgtcctt ttctcgatcc atttctttga
     1681 cccgctctgg aagctccagc ctctcagggg ggcccaactc tgtcttgtgc agagggcggc
     1741 cacctctgga ggagagaagg gccctctgca aagccccctc cgtggcttcc tcctggcagc
     1801 cctggacacc tgtcccccag gctggggaaa agctgctgcc cactgaagag actcctgagg
     1861 actctttttt catgcctcga cttggggaga gcagtacttc tggggtgctg cccagctccc
     1921 ggataaggca cagatcggag ccccagcacc ccaaggagaa gccatttgtg ttcaacctcg
     1981 atgatgaaaa catacggacc tctgatgtgt gatgaggcgc agtgcccagg agggaagggg
     2041 aggactcaga tgtccaaggg gccgtgactc agtttctcca cctgctggag gacagtcgga
     2101 ggccttcctg gcactcacat ccctgtggag ctctcttggg ggaggggagc atccagctgt
     2161 tttttttttt tttttaaatc aatgcagtgt ttttaattcg ggaaagtcac caggttagac
     2221 ctgtaggctt gctcagtgga gagcagggtg cctcttacct tgactcttcc atggtccacc
     2281 tggtgagtgg aggttggaag gccaatttca tccctaacca agtttttgtt ccttgtcctc
     2341 gtcttattag tttcttccct ttgttttcag gccaggtgca gaaccttgag gccagtcatc
     2401 tggttttatc ctattgctgt tcattggctg aagtttgact gtgaagtagg agggtgggaa
     2461 ctcacccaac tgaaactggg ggaagcagtg ggggacaccc aggctccagc ttggctggga
     2521 tacattctga ggggaggtgt taaaatctgg gcgctggtcg gggggggccc tgaatgtcga
     2581 ccagggcaga ttcccccaac ctccggggga cctccatggg ggaagaaata gggacctctt
     2641 gtaaggaatg ggagaatgca ctcccaaccc cagtgcatca tccagtttcg ggaattactc
     2701 tgttctcttt gagatgttct ttcaccccag atactgtcgc tgtgagagac agacctgccc
     2761 accctgttgc tgtgtcaggc ccttaggatg ggtttatcag tgttcagtgc tgagaacaga
     2821 acagacattg cccttgatat ggcgttactt ggaatgtgtg gagggttgat gagtgtatga
     2881 taattcactt gtgtgataca tcacatctgt attttagagt ttgagagttg ctttaaagca
     2941 ggtgctggga agagatggag ttgagttcat ccagctaaaa atttttgatc catgttttcc
     3001 agacagaaga aaaggtctct tttcgcaaag acagatgatc ttgggttctt gcctctcagc
     3061 tcttctttca tgggccgata gtagtctgat tttaagtgct gtatattgta taccttggca
     3121 gatttgcttt ctttctgttc tttgtgttgc cctttgggtg atgcctcgtg tctgtacttg
     3181 catgatgaaa tcttgtcgtc tgacgaggtt caacgttcat aacagtgagg agataacaaa
     3241 gataatcttg agagatattt atatctttaa taaaatagaa actgtgcaga gaaacattga
     3301 tttacagcct atgcattgct ggttagagat ttcccaggta gaagagcata gattgtattt
     3361 cccatcccgt attttaggat gtaccttctt ccatttgaca agagatccta tttccagggt
     3421 ccctgggaga aattatctgt ccagcttatg tggtgaactg ctaccaaggt tccctaaagg
     3481 gagggagctt aactcagttc tatctagaac tctgtatcag ctagatcagt taattttgtc
     3541 tttaaattaa gaattaacga gtagaggagg agactgtgat cagaaaatcc ttagtggctt
     3601 gagggaaatc ttctgtttgt ttcgggcagt gtagtttcct tgaagtctgt gtcaggttga
     3661 gaacttttcg accgtacttc tttggagata attttcactt aaattgtttg ccctagtggt
     3721 cctggtataa aaaaggaaat ctgctctaga tttctctctc tctctttttt tcccttcttt
     3781 tctgcagcct cctgtatact tttgtcctta gaaatccctg gtttggaggt tatttattta
     3841 tgagtgatca aggtgacaac atacttcaag tagcctggtt tcaagaaggc attacgaatt
     3901 cttaaagttc tttgtctcag gtttcatctt cagattttcc tcaagaaaat tctttggcta
     3961 ggtgaaagaa agtgcacaga gaaatggaac taacaaagat aaattaggac cttctgagat
     4021 ctctgtaaac attccctgac tcatggaaag atgtcatctc ctggtgttta acttgtgaaa
     4081 atctacccat ttcttcctct tttaaataaa ctctctgctc gattactact gctgaattaa
     4141 ttggccatta tggtaagctg gtatgtttct tattcagtaa ggtttatttt gagaatgtat
     4201 taaattaaac atgcttataa atccagattg tatgatcata atagagggga aacaaggatt
     4261 ctagttggca gatacttggg aattccaagt tagagcgttg ttaatgtagt tccaacacca
     4321 gataaataga attatcttca gtgaagctta gaggcattct cattgccaaa ccttatctca
     4381 gaattccttt cgagctccta tttcttagct tctggttaat ttcacatcac accttttaat
     4441 gttactacac gtgtgagcca aagatggtgc atatacgacc aaagcatttg gtgtcaaatg
     4501 tgaaaaatgg aaccaaatgg aaaaaacaag gaggggatgc aatatcgatt agtagttaag
     4561 tgcataggct ctggaataaa cctgttcatt ttgtttgttt taaaaacagg aaccaaaaaa
     4621 aggtactgca tttttttgtg tgtgtggaat aaaaacgttc tctgagttgt gctgttttca
     4681 taagactttt gacatggtct tgacccactg tgtgtaacag cttcaggtgt ctccccatag
     4741 gtgaactatt attgtccact gttcttgaaa gttaaggaat tgcttgctca gggtcagctg
     4801 atggctggtg aacgtagttt ggccttttgc attctgtgag atgacagttg tactaaggtg
     4861 tccatcaggt aaagcgatct caggtgaaaa ttgcagagtt acacatctgt ttctgaatag
     4921 aatgctgagc tcccatgaga aagagtccaa cttcatagtt cacttgaagc agaaggtggt
     4981 ttgttgtttt atttttttcc ccctgaatgt aactgtgctc tgatacggtc tgaaaggatc
     5041 caataaataa gtggcagatt cagtagttga gcagtgggat ttgatatgtt tgttttcact
     5101 gttaaccaga taaataggca taaggaagta gcagagtttt ggaaactgag tttcccaaat
     5161 cagctttgtt tataaagttt gaacatgtca gaaacggaca gatttattac atcttttcta
     5221 ccaatgtcac tttttttcct tagtcccttt ttctctctgt tactgcctgc agtagtgaat
     5281 tacagtcact catgctcggt agagtttcaa taaagagatt atttggcccc caaacatact
     5341 gtttgacccc ttcccccgct gctccccaag gtgtagcatg attctgtgtt ttgaaccagt
     5401 atgtttcagc tgtgaaatgc acttgtaggc tgagctgagt gcatggaaac tcttacgctt
     5461 ctcattttaa gcgatctcct acttggtatg tagcaaaaaa taattttcta aaactgtttt
     5521 gtcgcttgtt ttgtaataaa aaccatgtga aatactgaa
//
LOCUS       XR_004347896            1770 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology domain containing A2
            (PLEKHA2), transcript variant X7, misc_RNA.
ACCESSION   XR_004347896
VERSION     XR_004347896.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1770
                     /gene="PLEKHA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746859"
     misc_RNA        1..1770
                     /gene="PLEKHA2"
                     /product="pleckstrin homology domain containing A2,
                     transcript variant X7"
                     /db_xref="GeneID:116746859"
ORIGIN      
        1 ttgggaagaa taaacggggt aaagagtgag cccgcgggcc ggctcgtctc cctgtttcta
       61 ggatgccctc atccccgggc ccctttccca ctcggacacc tgctgcccgg ggcctgcgtc
      121 ggaagcaggg cctcccccgg cgcggccgag gtggtcccgg cgcgcagcct ctggggccgc
      181 ctccgggcgc cccgcccccg ccgagtccgc gcagcccgcg cgcccggccg cgccccctcc
      241 cagcccgcgg cgccccggca cccctctccg cccccggcgg gctcggcgga gcattgtact
      301 cacatccggg gctgggtttt gctttaatgc gaaacgtaat taacccggaa aaaagagccg
      361 aaggacaaga gaggaggagg gagggaggag gggaggggga gaggagcgag aggcgcgaga
      421 gaccccgaga gtttggcggc gacagacatc ccccgagagc gacggcccgc ggggccccag
      481 aggcgcttcc cagcccgatg taacccacgc accctgcccg agccccggcc ctgcgcggcg
      541 ggggtaatgt gagcagagcc caggaatgcc ttatgtggat cggcagaacc gaatctgtgg
      601 gtttctggac atcgaggaga atgagaacag cggcaagttt ctgcggaggt actttattct
      661 ggacacgcag gccaactgcc ttctctggta catggacaac ccccagaacc tggcagttgg
      721 ggcaggagcc gtcggatctt tgcagctgac ctacatctcg aaggtgagca tagccacccc
      781 aaagcagaaa cccaagactc cgttttgctt tgtcatcaac gccctctcgc agaggtattt
      841 tcttcaagcc aatgaccaga aagatctgaa ggactgggtc gaagccctga accaagccag
      901 caaaatcact gtacccaaag ttgggaactt gcccctgacg accgaagttg tcaagagcct
      961 agcaactcct ctggccctgg agaagaagcc ccaggtggcc tacaagacag agatcatcgg
     1021 aggcgtggtg gtacacacgc ccatcaacca gaacggtggg gatgggcagg aagggagtga
     1081 gcctggctcc cacgccatcc ttcgaaggtc tcagagttac atccccacga caggctgccg
     1141 tgtccccacc gggccccccc tcattaagag cggctattgt gtgaagcaag ggaatgtgcg
     1201 caagagctgg aaacggcgct tctttgcgct ggacgacttt accatctgct acttcaagtg
     1261 tgagcaggac cgagaaccac tgcgtaccat attcctcaag gatgttctca agacccacga
     1321 gtgtttggtc aagtctggcg acctgctgat gagggacaac ctgtttgaaa taataaccag
     1381 ctccaggacc ttctacgtgc aggtaatcaa agctcatcgg actgcaataa aaccacagac
     1441 tgcagtgacg catttaatac cctttgttcc tctcacctca aaaactgccc tcaaggacag
     1501 aaaccctact tttccttttg aaccaagcac cagaaacatg tacacactta agcagaccag
     1561 gaagagagga aggaatctga gagacttcaa gaaatataga catgtgtaca gaaatcctta
     1621 agaaggctga aaagaataca atagaaaaca ggcagacagt ccagaagaca tgcacagctg
     1681 gattaaggag atcggggcag ctgtccaggc cctcaagtgc caccccagag aaatgtcctt
     1741 ttctcgatcc atttctttga cccgctctgg
//
LOCUS       XR_004347897            5306 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology domain containing A2
            (PLEKHA2), transcript variant X8, misc_RNA.
ACCESSION   XR_004347897
VERSION     XR_004347897.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5306
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5306
                     /gene="PLEKHA2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746859"
     misc_RNA        1..5306
                     /gene="PLEKHA2"
                     /product="pleckstrin homology domain containing A2,
                     transcript variant X8"
                     /db_xref="GeneID:116746859"
ORIGIN      
        1 gggaagaata aacggggtaa agagtgagcc cgcgggccgg ctcgtctccc tgtttctagg
       61 atgccctcat ccccgggccc ctttcccact cggacacctg ctgcccgggg cctgcgtcgg
      121 aagcagggcc tcccccggcg cggccgaggt ggtcccggcg cgcagcctct ggggccgcct
      181 ccgggcgccc cgcccccgcc gagtccgcgc agcccgcgcg cccggccgcg ccccctccca
      241 gcccgcggcg ccccggcacc cctctccgcc cccggcgggc tcggcggagc attgtactca
      301 catccggggc tgggttttgc tttaatgcga aacgtaatta acccggaaaa aagagccgaa
      361 ggacaagaga ggaggaggga gggaggaggg gagggggaga ggagcgagag gcgcgagaga
      421 ccccgagagt ttggcggcga cagacatccc ccgagagcga cggcccgcgg ggccccagag
      481 gcgcttccca gcccgatgta acccacgcac cctgcccgag ccccggccct gcgcggcggg
      541 ggtaatgtga gcagagccca ggaatgcctt atgtggatcg gcagaaccga atctgtgggt
      601 ttctggacat cgaggagaat gagaacagcg gcaagtttct gcggaggtac tttattctgg
      661 acacgcaggc caactgcctt ctctggtaca tggacaaccc ccagaacctg gcagttgggg
      721 caggagccgt cggatctttg cagctgacct acatctcgaa ggtgagcata gccaccccaa
      781 agcagaaacc caagactccg ttttgctttg tcatcaacgc cctctcgcag aggtattttc
      841 ttcaagccaa tgaccagaaa gatctgaagg actgggtcga agccctgaac caagccagca
      901 aaatcactgt acccaaagtt gggaacttgc ccctgacgac cgaagttgtc aagagcctag
      961 caactcctct ggccctggag aagaagcccc aggtggccta caagacagag atcatcggag
     1021 gcgtggtggt acacacgccc atcaaccagg ctgccgtgtc cccaccgggc cccccctcat
     1081 taagagcggc tattgtgtga agcaagggaa tgtgcgcaag agctggaaac ggcgcttctt
     1141 tgcgctggac gactttacca tctgctactt caagtgtgag caggaccgag aaccactgcg
     1201 taccatattc ctcaaggatg ttctcaagac ccacgagtgt ttggtcaagt ctggcgacct
     1261 gctgatgagg gacaacctgt ttgaaataat aaccagctcc aggaccttct acgtgcaggc
     1321 agacagtcca gaagacatgc acagctggat taaggagatc ggggcagctg tccaggccct
     1381 caagtgccac cccagagaaa tgtccttttc tcgatccatt tctttgaccc gctctggaag
     1441 ctccagcctc tcaggggggc ccaactctgt cttgtgcaga gggcggccac ctctggagga
     1501 gagaagggcc ctctgcaaag ccccctccgt ggcttcctcc tggcagccct ggacacctgt
     1561 cccccaggct ggggaaaagc tgctgcccac tgaagagact cctgaggact cttttttcat
     1621 gcctcgactt ggggagagca gtacttctgg ggtgctgccc agctcccgga taaggcacag
     1681 atcggagccc cagcacccca aggagaagcc atttgtgttc aacctcgatg atgaaaacat
     1741 acggacctct gatgtgtgat gaggcgcagt gcccaggagg gaaggggagg actcagatgt
     1801 ccaaggggcc gtgactcagt ttctccacct gctggaggac agtcggaggc cttcctggca
     1861 ctcacatccc tgtggagctc tcttggggga ggggagcatc cagctgtttt tttttttttt
     1921 ttaaatcaat gcagtgtttt taattcggga aagtcaccag gttagacctg taggcttgct
     1981 cagtggagag cagggtgcct cttaccttga ctcttccatg gtccacctgg tgagtggagg
     2041 ttggaaggcc aatttcatcc ctaaccaagt ttttgttcct tgtcctcgtc ttattagttt
     2101 cttccctttg ttttcaggcc aggtgcagaa ccttgaggcc agtcatctgg ttttatccta
     2161 ttgctgttca ttggctgaag tttgactgtg aagtaggagg gtgggaactc acccaactga
     2221 aactggggga agcagtgggg gacacccagg ctccagcttg gctgggatac attctgaggg
     2281 gaggtgttaa aatctgggcg ctggtcgggg ggggccctga atgtcgacca gggcagattc
     2341 ccccaacctc cgggggacct ccatggggga agaaataggg acctcttgta aggaatggga
     2401 gaatgcactc ccaaccccag tgcatcatcc agtttcggga attactctgt tctctttgag
     2461 atgttctttc accccagata ctgtcgctgt gagagacaga cctgcccacc ctgttgctgt
     2521 gtcaggccct taggatgggt ttatcagtgt tcagtgctga gaacagaaca gacattgccc
     2581 ttgatatggc gttacttgga atgtgtggag ggttgatgag tgtatgataa ttcacttgtg
     2641 tgatacatca catctgtatt ttagagtttg agagttgctt taaagcaggt gctgggaaga
     2701 gatggagttg agttcatcca gctaaaaatt tttgatccat gttttccaga cagaagaaaa
     2761 ggtctctttt cgcaaagaca gatgatcttg ggttcttgcc tctcagctct tctttcatgg
     2821 gccgatagta gtctgatttt aagtgctgta tattgtatac cttggcagat ttgctttctt
     2881 tctgttcttt gtgttgccct ttgggtgatg cctcgtgtct gtacttgcat gatgaaatct
     2941 tgtcgtctga cgaggttcaa cgttcataac agtgaggaga taacaaagat aatcttgaga
     3001 gatatttata tctttaataa aatagaaact gtgcagagaa acattgattt acagcctatg
     3061 cattgctggt tagagatttc ccaggtagaa gagcatagat tgtatttccc atcccgtatt
     3121 ttaggatgta ccttcttcca tttgacaaga gatcctattt ccagggtccc tgggagaaat
     3181 tatctgtcca gcttatgtgg tgaactgcta ccaaggttcc ctaaagggag ggagcttaac
     3241 tcagttctat ctagaactct gtatcagcta gatcagttaa ttttgtcttt aaattaagaa
     3301 ttaacgagta gaggaggaga ctgtgatcag aaaatcctta gtggcttgag ggaaatcttc
     3361 tgtttgtttc gggcagtgta gtttccttga agtctgtgtc aggttgagaa cttttcgacc
     3421 gtacttcttt ggagataatt ttcacttaaa ttgtttgccc tagtggtcct ggtataaaaa
     3481 aggaaatctg ctctagattt ctctctctct ctttttttcc cttcttttct gcagcctcct
     3541 gtatactttt gtccttagaa atccctggtt tggaggttat ttatttatga gtgatcaagg
     3601 tgacaacata cttcaagtag cctggtttca agaaggcatt acgaattctt aaagttcttt
     3661 gtctcaggtt tcatcttcag attttcctca agaaaattct ttggctaggt gaaagaaagt
     3721 gcacagagaa atggaactaa caaagataaa ttaggacctt ctgagatctc tgtaaacatt
     3781 ccctgactca tggaaagatg tcatctcctg gtgtttaact tgtgaaaatc tacccatttc
     3841 ttcctctttt aaataaactc tctgctcgat tactactgct gaattaattg gccattatgg
     3901 taagctggta tgtttcttat tcagtaaggt ttattttgag aatgtattaa attaaacatg
     3961 cttataaatc cagattgtat gatcataata gaggggaaac aaggattcta gttggcagat
     4021 acttgggaat tccaagttag agcgttgtta atgtagttcc aacaccagat aaatagaatt
     4081 atcttcagtg aagcttagag gcattctcat tgccaaacct tatctcagaa ttcctttcga
     4141 gctcctattt cttagcttct ggttaatttc acatcacacc ttttaatgtt actacacgtg
     4201 tgagccaaag atggtgcata tacgaccaaa gcatttggtg tcaaatgtga aaaatggaac
     4261 caaatggaaa aaacaaggag gggatgcaat atcgattagt agttaagtgc ataggctctg
     4321 gaataaacct gttcattttg tttgttttaa aaacaggaac caaaaaaagg tactgcattt
     4381 ttttgtgtgt gtggaataaa aacgttctct gagttgtgct gttttcataa gacttttgac
     4441 atggtcttga cccactgtgt gtaacagctt caggtgtctc cccataggtg aactattatt
     4501 gtccactgtt cttgaaagtt aaggaattgc ttgctcaggg tcagctgatg gctggtgaac
     4561 gtagtttggc cttttgcatt ctgtgagatg acagttgtac taaggtgtcc atcaggtaaa
     4621 gcgatctcag gtgaaaattg cagagttaca catctgtttc tgaatagaat gctgagctcc
     4681 catgagaaag agtccaactt catagttcac ttgaagcaga aggtggtttg ttgttttatt
     4741 tttttccccc tgaatgtaac tgtgctctga tacggtctga aaggatccaa taaataagtg
     4801 gcagattcag tagttgagca gtgggatttg atatgtttgt tttcactgtt aaccagataa
     4861 ataggcataa ggaagtagca gagttttgga aactgagttt cccaaatcag ctttgtttat
     4921 aaagtttgaa catgtcagaa acggacagat ttattacatc ttttctacca atgtcacttt
     4981 ttttccttag tccctttttc tctctgttac tgcctgcagt agtgaattac agtcactcat
     5041 gctcggtaga gtttcaataa agagattatt tggcccccaa acatactgtt tgaccccttc
     5101 ccccgctgct ccccaaggtg tagcatgatt ctgtgttttg aaccagtatg tttcagctgt
     5161 gaaatgcact tgtaggctga gctgagtgca tggaaactct tacgcttctc attttaagcg
     5221 atctcctact tggtatgtag caaaaaataa ttttctaaaa ctgttttgtc gcttgttttg
     5281 taataaaaac catgtgaaat actgaa
//
LOCUS       XR_004347898            3391 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746860
            (LOC116746860), transcript variant X1, ncRNA.
ACCESSION   XR_004347898
VERSION     XR_004347898.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3391
                     /gene="LOC116746860"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746860"
     ncRNA           1..3391
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746860"
                     /product="uncharacterized LOC116746860, transcript variant
                     X1"
                     /db_xref="GeneID:116746860"
ORIGIN      
        1 ctcctccccc acccccgctc cagcgacttc agcctggcct tcccgggacc cggagccttc
       61 agccatcggg gtttagggtt agcgtcgaag gaagcatctc agattctccc gggttgtcat
      121 gcatgtgccc caggagccca ggggggtcgt aagttctaac ggctgtatag ggactttttc
      181 agagcgtgac gcaaagacgc ctttccagcc ctcggagcgg gagggagctc tgggggaaaa
      241 tgggaaacag acaagcagca ggtattaagt aatattgcca agaggaacct aagagaactg
      301 tcgggtgccg gtgcagcctc tgcgttaccg catttgatcc acgctgcaac cctatgggta
      361 tcaatcccct tcacgatgag gaaaccgaga ctcagagacg ttaaggaatt tgccctgggt
      421 cccacagtta tcaatggctc gtctgtcagg ttctgacacc ggcctcgcac gtgaggagat
      481 agatatttca atgtacatgc agccaggcac ataacattcg aaacacagaa aacgtagtgg
      541 attgaccctg ggatggagga ccgaccggga gctgcgattc ctggggattt tggtgcaaat
      601 atagttgata aggtcgagtc ctagttacaa ggctttgacg caggggaggg ccgaagaaga
      661 cccttaaggc tggatgggcg ggattgcggg aaaggctggt ccacgtccca gtgttggaag
      721 gggaaaggca gactgttaaa aagtctccag gacctgaggc agcaaagcct gggggagggg
      781 ggccccagcc agacgagccg ggaggaaggt aggaccacgc tcagcacaca ccccgaaagc
      841 accagtgatg aaaccacacg tttcctcttc cattttgatt gccaaagcaa aaatgaaccg
      901 acctgctctc tcaggtgtga aaaaagactg tttgctttag aacattttgc tttgaatgag
      961 gaaggaaagg gggacacaag aaaaaaagca tttcctttga aataaataca tcaacgtcaa
     1021 attttttttt tttttctatc tgctcatgaa gatttttgcc actcacataa atttcaggca
     1081 gagcatatac tctggaacca gatggcctgg gtttgaatcc cagctgtggt gcttattagc
     1141 tttgatccca gagcaagtga caacctttcc gtgccttatt ttctacatct ggatgcctac
     1201 aaagagtgaa tgagttaaca tttgtagagt gtttggatta ctgcccaacg tgaagtaggt
     1261 gctatgtaaa tgttttcgaa ttgaaaaatt agattatggt tttcagggtg aaatggaaca
     1321 aaattccatc gagttcccag taaatccgac tggaagggat ggtttccagt atgagccatg
     1381 aggtaaaaag tctcagattc catggtatgg tacatattaa acccataaaa ctctagtccc
     1441 tgcggggcct gcctgagtta ctcaatcaca gtcacaaata tttcctgagc actactgtac
     1501 tggatgcctg ggaggcaaag ctcgtcgaga ggatgcaagt gttactagga ggttgacgca
     1561 gccttgtatc cctcctggaa atgccatgaa aatggcacgg agtgacaaag tactaccaac
     1621 ttttagagga acaagacatg tgtgtgtgcg cgcacacgca tatgtttggg aggggtcctc
     1681 gagaaggaag tagtgaattt tgaaatgggc ctgagaagat ggggacaatt tgactccagt
     1741 gttgggctgg ggtggggttg gggggtcatc agtgcccttt gggtgatgct tgtacttcac
     1801 tgggatccct gtttactgcc acatttatcg ctagccagga cctggcccca gttagattac
     1861 aatttcttct ctgactcctg tatttccact gtttcctcag aggtctcctg ccaccccctc
     1921 ccgtagtggc acagagtgtc aattgagtct gagccctgct gtggtccttt tgccatctcc
     1981 gacacatttt gaaagtattt acattgactg attttatgca ttcatttttt tcagtgcaat
     2041 aaacagcccg gatgtctgaa aatgtgactc cgcctattgg gaaaggaatg tcaaaaaagg
     2101 cctttcacat cagctctctc agtcccctgt tgtatcagtg caagatgagg ttcaacaatt
     2161 tgctgaaggt tttgcagctg gttagtggca gaggtgtttc tggaacccag aatcttctag
     2221 tattgatgtg ggaacctttc catgaagatg gagactactg gtccagaacc taagaattta
     2281 aacagagagc cttatactct atacccattt atgcactttt ctattcattt tcagtgttca
     2341 cggctgggta actagatgcc ctaacgacct tcagtggtga gccagggcac cctctgggga
     2401 acaacattgt gctctgtcct tagagacacc attatggaag gtaccaggct gaagctgggg
     2461 gccaggtagt tccgttgggg aaagtgtggg actgaagagg ccaaggtcag tggttgatcc
     2521 tggttcaggc cagttaattt cgcacaaaga tgaattgctc caaggccatc gcacttctag
     2581 tgctagctgg tcattttata aagagttgtt gttggtttca atagcaaagt accatccatt
     2641 tctagaaaga ttactcaaac tactattgtt ctattcagtc ctattcattc agcaaacaat
     2701 gatctgaacc tattaactat ttttcctccc atatatctta tacttactta ttttccaggt
     2761 gcttactaaa tgttaattgc tttacatgta ttgtctcatt taaatcttac aacactggga
     2821 gtaaggtact actatttccc cattttatag atgagatgac taaaacatgg agaccaagcc
     2881 tagttacaag cctgtgcagt ctgacgccag agctggcccc ctcttaacca ccaagtttgt
     2941 gaaggattca ggaagacata aaacaagact ctttccctcc acattttcga taactatcat
     3001 catttagaat ctcctttcct tttcagctag caatttcatg tccaaagatt tgtcctacag
     3061 aaagtcatcc ggaggtatat atagtataga tggagtgtat gtttatgtgt atatacgaaa
     3121 tgtatatctg gaatatatat acacatttgc tgcagcataa tagtgaaatt tggaaatcac
     3181 tgtcattctc atcagcaagg gattgaacag caccaaggaa aagccgtgtg aacacacagc
     3241 aagaaggcag ccgtctgcag tcctagaaga gagctctcac cagagcgcaa ccatgctggc
     3301 aaccccatcc cggactccag cctccagact gggcttccct ggtggtgcag tggttaagaa
     3361 tccacctgcc aatgcagggg acacgggttc g
//
LOCUS       XR_004347899            1471 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746860
            (LOC116746860), transcript variant X2, ncRNA.
ACCESSION   XR_004347899
VERSION     XR_004347899.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1471
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1471
                     /gene="LOC116746860"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746860"
     ncRNA           1..1471
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746860"
                     /product="uncharacterized LOC116746860, transcript variant
                     X2"
                     /db_xref="GeneID:116746860"
ORIGIN      
        1 ttcctttaag tcaccccaga gtccgtagtt ccagaagccc gaggggcccg ggctggaccc
       61 agagtgaagg gaggcatctc cctcgggagg cttctaggcc tgccacggaa taagtgcaat
      121 aaacagcccg gatgtctgaa aatgtgactc cgcctattgg gaaaggaatg tcaaaaaagg
      181 cctttcacat cagctctctc agtcccctgt tgtatcagtg caagatgagg ttcaacaatt
      241 tgctgaaggt tttgcagctg gttagtggca gaggtgtttc tggaacccag aatcttctag
      301 tattgatgtg ggaacctttc catgaagatg gagactactg gtccagaacc taagaattta
      361 aacagagagc cttatactct atacccattt atgcactttt ctattcattt tcagtgttca
      421 cggctgggta actagatgcc ctaacgacct tcagtggtga gccagggcac cctctgggga
      481 acaacattgt gctctgtcct tagagacacc attatggaag gtaccaggct gaagctgggg
      541 gccaggtagt tccgttgggg aaagtgtggg actgaagagg ccaaggtcag tggttgatcc
      601 tggttcaggc cagttaattt cgcacaaaga tgaattgctc caaggccatc gcacttctag
      661 tgctagctgg tcattttata aagagttgtt gttggtttca atagcaaagt accatccatt
      721 tctagaaaga ttactcaaac tactattgtt ctattcagtc ctattcattc agcaaacaat
      781 gatctgaacc tattaactat ttttcctccc atatatctta tacttactta ttttccaggt
      841 gcttactaaa tgttaattgc tttacatgta ttgtctcatt taaatcttac aacactggga
      901 gtaaggtact actatttccc cattttatag atgagatgac taaaacatgg agaccaagcc
      961 tagttacaag cctgtgcagt ctgacgccag agctggcccc ctcttaacca ccaagtttgt
     1021 gaaggattca ggaagacata aaacaagact ctttccctcc acattttcga taactatcat
     1081 catttagaat ctcctttcct tttcagctag caatttcatg tccaaagatt tgtcctacag
     1141 aaagtcatcc ggaggtatat atagtataga tggagtgtat gtttatgtgt atatacgaaa
     1201 tgtatatctg gaatatatat acacatttgc tgcagcataa tagtgaaatt tggaaatcac
     1261 tgtcattctc atcagcaagg gattgaacag caccaaggaa aagccgtgtg aacacacagc
     1321 aagaaggcag ccgtctgcag tcctagaaga gagctctcac cagagcgcaa ccatgctggc
     1381 aaccccatcc cggactccag cctccagact gggcttccct ggtggtgcag tggttaagaa
     1441 tccacctgcc aatgcagggg acacgggttc g
//
LOCUS       XM_032618612            3868 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylamine N-acetyltransferase 1
            (LOC116746861), transcript variant X1, mRNA.
ACCESSION   XM_032618612
VERSION     XM_032618612.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3868
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3868
                     /gene="LOC116746861"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 10 long SRA reads, 24
                     Proteins, and 82% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746861"
     CDS             152..1024
                     /gene="LOC116746861"
                     /codon_start=1
                     /product="arylamine N-acetyltransferase 1"
                     /protein_id="XP_032474503.1"
                     /db_xref="GeneID:116746861"
                     /translation="MNIEAYFERIGYKHYRNKLDLETLTDILQHQIRAIPFENLNIHC
                     GEAMELGLEDTFDQIVRRNRGGWCLQVNHLLYWALTTIGFETTILGGYVYNTSANKYS
                     DAMIHLLLKVTIDGRNYIADAGFGRSYQMWQPLELISRKDQPQVPCIFCLTEERGIWY
                     LDQIRREQYIPNQEFLNSELLEKNKYRKIYSFTLEPRTIEDFESVNIYLQESPASVFT
                     SKSFCSLQTPEGVHCLVGFTLTYRRFNYKDNTDLVEFNTLNEEEVKENLKNIFNISLE
                     KKLVPKHGDKFFTI"
     misc_feature    209..991
                     /gene="LOC116746861"
                     /note="N-acetyltransferase; Region: Acetyltransf_2;
                     pfam00797"
                     /db_xref="CDD:395644"
ORIGIN      
        1 ggcttgtcca ggaagtggga agatggcagt cagcccggtt cctggttgtg ggacccaggg
       61 gagctcgagt gaactaggaa gaagaactat cctaagtctt ctgaattaaa actgagactc
      121 agtctacatt gaacttcctc agaaaggaat catgaacatt gaagcatatt ttgaaagaat
      181 tggttataag cactatagga acaagttgga cttggaaaca ttaactgaca ttcttcagca
      241 ccagatccga gccattccct ttgagaatct taacatccat tgtggggaag ccatggaatt
      301 gggcttagag gacacttttg atcaaattgt gaggaggaac cgaggtgggt ggtgtctcca
      361 agtcaatcat cttctgtact gggctctgac cacaattggt tttgagacca ctatactggg
      421 agggtatgta tacaacactt cagcaaacaa atacagcgat gccatgattc acctcctgct
      481 gaaggtgacc attgatggca ggaactacat agctgatgct ggatttggac gctcttacca
      541 gatgtggcag cctctagagt taatttctag gaaggatcag ccccaggtgc cttgcatctt
      601 ctgcttgaca gaagagagag gaatctggta cctagaccaa atcagaagag agcagtatat
      661 cccaaaccaa gaatttctta attctgagct cctggaaaag aataaatatc ggaaaatcta
      721 ctcttttact cttgaacctc gaacaattga agactttgag tctgtgaata tataccttca
      781 ggaatctcca gcatctgtct ttacaagcaa gtcattttgt tccttgcaga ccccagaagg
      841 tgttcactgt ttagtgggct tcaccctcac ctacaggaga ttcaattata aggacaatac
      901 agatttggta gagtttaaca cactgaatga agaagaagta aaagaaaatc taaaaaatat
      961 atttaatatt tccttggaga aaaagcttgt ccccaaacat ggtgataaat tttttaccat
     1021 atagtgtaag cagtaaaaat ggtctcagta ttacttctgg tgctgtaaat tttattataa
     1081 aaaagtttaa acgtctataa aagtagagag aatgaaataa taaacctgca tttgtttatc
     1141 actcagttta tcagctataa actagaggct tatcatattt tctcaatgct cccacattat
     1201 attgaagaaa atgctagata tcaaatcatt tcacctttaa aaatgtcagc atatataatt
     1261 agataacatt taagaaaaca taaccatata tcttttcaaa aataataata gcaaagatgt
     1321 tttaatgatg gcctatggtt ttcttgagga aaaagtgatt tatgctagaa aactttccac
     1381 attggttaat gttgatttca taaaacatgt ttacctataa ctcagtaact agaaccttga
     1441 gggaaacttt tttattaaat tctaccagtg tatatccaat gtcatatttg tgcagaaata
     1501 ccacatgtat aatgggatta taattcaacc aaaaagaaag agacatgaca ttgtttccaa
     1561 ataacctaat atttctcaag acaaagtgta aaccaatact tgttagcatg tgatcaagta
     1621 ccaagagagg gacaccacta ataatttctt acatggctct ttttgcaacc acagatcttc
     1681 aagtaccatt tttcttaata tgggaacact actatttata attttcaaat tttggaactc
     1741 agtatttttg cttaaaagta ataagtactg caaatttaaa aatacttatt atctaaaaac
     1801 ttcatattag aaaagtatgt taaaacatgt tggccaatac aatatcagtc ataaaatttt
     1861 tgtttggcag agttaggtta ttatggggtt tctttttttg ttttttccct gcagtagagt
     1921 cttccttgaa tcctcgttct tgtctcccag ctctattctt ttacttcctt ttacactttg
     1981 ttgtaagaga aagagtatgt gcttcaaagt atacagttct gagttcaaat cctgtggaca
     2041 ccaggtgaat taattgatga atctgtggct cccattcctc agggataaaa tggggacaat
     2101 acctatataa gtgccaaacc taaagcacca tcttccttcc ctctcattgg ccttgttcag
     2161 ctctgctgct atcttgcagc atggttaggt catgtatggt actgttggac agaaaggatt
     2221 ttctcacatt ctgaaaagac aatgccaagg gaggagatgt aggcaagaga tacattccag
     2281 atcaaaatgt ggctcaagag aggaccttca agatggtgga ggactcaaat atggaggtca
     2341 cctccccaca aatacatcaa aaatatatct atatgtggaa caactcctac agaacaccta
     2401 ctgaacactg acagaagatc tcagacttcc caaaaggcaa ggaaatcccc acctacctgg
     2461 ccgtgtggct gacagggact tggtgctcca gcaggatgtc aggcctgagc ctctgaggtg
     2521 ggagagacaa gttcaggacg tgggaccagc agagacatcc tgaccatacg taatatcaat
     2581 cactgagagt tccccaaaga tctccgtctc aacactaaga aacaactcca ctcaatgacc
     2641 agcaagctgc agtgctggac accccatgac aaacaaccag caaggaacac aaacacatcc
     2701 attagcagag agactgccta aaatcataag aagttcacag acaccccaaa acacaccacc
     2761 agacatagtc ctgcccacca gacagacaag atgcagcctc atccaccaaa acacaggcac
     2821 cagtcccctc cagtgggaag cctacacaac ccactgaact aaccttaccc actgggggca
     2881 gacaaaaaga ccacaggaac tacaagcctg cagtctgcac aaaggaatac acaatatgtt
     2941 aagcaaaatg agaagagaaa tatgcagcag atgaaagagc aaggtaaaaa cccaccagac
     3001 caaacaaatg gagaggaaat aggaaatcta cctgaaaaga attcagagta atgatagtaa
     3061 agatgatcca aaatcttgaa atagaatgga gaaacacaag aaacgtttaa caaggaccta
     3121 gaagaactaa agagcaagca aacaatgatg aacaacacaa taaatgaaat gaaaaatcct
     3181 ctagaaggaa tcaatagcag gataaataaa gcagaagaac ggataagtga cttggaagat
     3241 aaaatagtgg aaataactac cacagagaag aataaagtaa aacgaatgaa aaaaattgag
     3301 gacagtgtca gagacctcag ggacaacatt aaacgccaaa acattcgtat tgtaagggtc
     3361 ccagaagaag aagagaaaca gaaaggaact aagaaaattt ttgaagagat tatagttgaa
     3421 aacttcccta atatgggaaa ggaaatagtt aatcaagtcc aggaagcaca gagagtccct
     3481 tacaggataa atccaaggag aaacatgcca agacacatat taatcaaact atctaaaatt
     3541 aaataaaaag aaaacatatt aaaagcaaca agggaaaaac aataaataac acacaagtga
     3601 atgcccataa tgtcaacagc tgatctttca gcagaaactt agcaagccag aagagagtgg
     3661 caggacatat ttaaagagat gaaggagaaa aaccacaacc aaggttactg taaccgcaaa
     3721 gatctccttc agatttgatg gagaaattaa aacctttata gataagcaaa agctgtgaga
     3781 gttcagcacc ataaaaccag ctttacaaca aatgctaaag gaacttctct aggcaagaaa
     3841 cacaagagaa ggaaaagacc tacaatac
//
LOCUS       XM_032618613            4325 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylamine N-acetyltransferase 1
            (LOC116746861), transcript variant X2, mRNA.
ACCESSION   XM_032618613
VERSION     XM_032618613.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4325
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4325
                     /gene="LOC116746861"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 3 long SRA reads, 24
                     Proteins, and 84% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746861"
     CDS             609..1481
                     /gene="LOC116746861"
                     /codon_start=1
                     /product="arylamine N-acetyltransferase 1"
                     /protein_id="XP_032474504.1"
                     /db_xref="GeneID:116746861"
                     /translation="MNIEAYFERIGYKHYRNKLDLETLTDILQHQIRAIPFENLNIHC
                     GEAMELGLEDTFDQIVRRNRGGWCLQVNHLLYWALTTIGFETTILGGYVYNTSANKYS
                     DAMIHLLLKVTIDGRNYIADAGFGRSYQMWQPLELISRKDQPQVPCIFCLTEERGIWY
                     LDQIRREQYIPNQEFLNSELLEKNKYRKIYSFTLEPRTIEDFESVNIYLQESPASVFT
                     SKSFCSLQTPEGVHCLVGFTLTYRRFNYKDNTDLVEFNTLNEEEVKENLKNIFNISLE
                     KKLVPKHGDKFFTI"
     misc_feature    666..1448
                     /gene="LOC116746861"
                     /note="N-acetyltransferase; Region: Acetyltransf_2;
                     pfam00797"
                     /db_xref="CDD:395644"
ORIGIN      
        1 ccttgccctg gcccgatgcc cacaacaaca acacgcctgt tggctcttct ttgatgaact
       61 gacctttccc ttcccccaag tcacagtttt agttcctcac cacaaagtgg ctgaccctac
      121 cccctctcac tcagaaggaa gttgttaact gccaactatg tatatagctg catcctgccc
      181 agagacttat tttgtttgcc ctttacaggt ttaaatagtt cagagccaac tttaaaaata
      241 ggcagatttc acccacaact ttgagtttct gctcctcaag acggggaaaa aaagagaaac
      301 aaagaaacgt tcagaacttc ctgctgcctg ggtgtaactt tttttttttt tggctgtttt
      361 ccatgggcct tctgtgcagt aagcactgtg aaggacggtc tgtgggcacg gcttgcatgg
      421 caatttctct tgttttcatc cagaagatca ctgggctggc cacttgtccc tgggggtggg
      481 ttgggttgtg gtgtccttgc agtgagcctc ggcaccagaa aaagagtgaa ctaggaagaa
      541 gaactatcct aagtcttctg aattaaaact gagactcagt ctacattgaa cttcctcaga
      601 aaggaatcat gaacattgaa gcatattttg aaagaattgg ttataagcac tataggaaca
      661 agttggactt ggaaacatta actgacattc ttcagcacca gatccgagcc attccctttg
      721 agaatcttaa catccattgt ggggaagcca tggaattggg cttagaggac acttttgatc
      781 aaattgtgag gaggaaccga ggtgggtggt gtctccaagt caatcatctt ctgtactggg
      841 ctctgaccac aattggtttt gagaccacta tactgggagg gtatgtatac aacacttcag
      901 caaacaaata cagcgatgcc atgattcacc tcctgctgaa ggtgaccatt gatggcagga
      961 actacatagc tgatgctgga tttggacgct cttaccagat gtggcagcct ctagagttaa
     1021 tttctaggaa ggatcagccc caggtgcctt gcatcttctg cttgacagaa gagagaggaa
     1081 tctggtacct agaccaaatc agaagagagc agtatatccc aaaccaagaa tttcttaatt
     1141 ctgagctcct ggaaaagaat aaatatcgga aaatctactc ttttactctt gaacctcgaa
     1201 caattgaaga ctttgagtct gtgaatatat accttcagga atctccagca tctgtcttta
     1261 caagcaagtc attttgttcc ttgcagaccc cagaaggtgt tcactgttta gtgggcttca
     1321 ccctcaccta caggagattc aattataagg acaatacaga tttggtagag tttaacacac
     1381 tgaatgaaga agaagtaaaa gaaaatctaa aaaatatatt taatatttcc ttggagaaaa
     1441 agcttgtccc caaacatggt gataaatttt ttaccatata gtgtaagcag taaaaatggt
     1501 ctcagtatta cttctggtgc tgtaaatttt attataaaaa agtttaaacg tctataaaag
     1561 tagagagaat gaaataataa acctgcattt gtttatcact cagtttatca gctataaact
     1621 agaggcttat catattttct caatgctccc acattatatt gaagaaaatg ctagatatca
     1681 aatcatttca cctttaaaaa tgtcagcata tataattaga taacatttaa gaaaacataa
     1741 ccatatatct tttcaaaaat aataatagca aagatgtttt aatgatggcc tatggttttc
     1801 ttgaggaaaa agtgatttat gctagaaaac tttccacatt ggttaatgtt gatttcataa
     1861 aacatgttta cctataactc agtaactaga accttgaggg aaactttttt attaaattct
     1921 accagtgtat atccaatgtc atatttgtgc agaaatacca catgtataat gggattataa
     1981 ttcaaccaaa aagaaagaga catgacattg tttccaaata acctaatatt tctcaagaca
     2041 aagtgtaaac caatacttgt tagcatgtga tcaagtacca agagagggac accactaata
     2101 atttcttaca tggctctttt tgcaaccaca gatcttcaag taccattttt cttaatatgg
     2161 gaacactact atttataatt ttcaaatttt ggaactcagt atttttgctt aaaagtaata
     2221 agtactgcaa atttaaaaat acttattatc taaaaacttc atattagaaa agtatgttaa
     2281 aacatgttgg ccaatacaat atcagtcata aaatttttgt ttggcagagt taggttatta
     2341 tggggtttct ttttttgttt tttccctgca gtagagtctt ccttgaatcc tcgttcttgt
     2401 ctcccagctc tattctttta cttcctttta cactttgttg taagagaaag agtatgtgct
     2461 tcaaagtata cagttctgag ttcaaatcct gtggacacca ggtgaattaa ttgatgaatc
     2521 tgtggctccc attcctcagg gataaaatgg ggacaatacc tatataagtg ccaaacctaa
     2581 agcaccatct tccttccctc tcattggcct tgttcagctc tgctgctatc ttgcagcatg
     2641 gttaggtcat gtatggtact gttggacaga aaggattttc tcacattctg aaaagacaat
     2701 gccaagggag gagatgtagg caagagatac attccagatc aaaatgtggc tcaagagagg
     2761 accttcaaga tggtggagga ctcaaatatg gaggtcacct ccccacaaat acatcaaaaa
     2821 tatatctata tgtggaacaa ctcctacaga acacctactg aacactgaca gaagatctca
     2881 gacttcccaa aaggcaagga aatccccacc tacctggccg tgtggctgac agggacttgg
     2941 tgctccagca ggatgtcagg cctgagcctc tgaggtggga gagacaagtt caggacgtgg
     3001 gaccagcaga gacatcctga ccatacgtaa tatcaatcac tgagagttcc ccaaagatct
     3061 ccgtctcaac actaagaaac aactccactc aatgaccagc aagctgcagt gctggacacc
     3121 ccatgacaaa caaccagcaa ggaacacaaa cacatccatt agcagagaga ctgcctaaaa
     3181 tcataagaag ttcacagaca ccccaaaaca caccaccaga catagtcctg cccaccagac
     3241 agacaagatg cagcctcatc caccaaaaca caggcaccag tcccctccag tgggaagcct
     3301 acacaaccca ctgaactaac cttacccact gggggcagac aaaaagacca caggaactac
     3361 aagcctgcag tctgcacaaa ggaatacaca atatgttaag caaaatgaga agagaaatat
     3421 gcagcagatg aaagagcaag gtaaaaaccc accagaccaa acaaatggag aggaaatagg
     3481 aaatctacct gaaaagaatt cagagtaatg atagtaaaga tgatccaaaa tcttgaaata
     3541 gaatggagaa acacaagaaa cgtttaacaa ggacctagaa gaactaaaga gcaagcaaac
     3601 aatgatgaac aacacaataa atgaaatgaa aaatcctcta gaaggaatca atagcaggat
     3661 aaataaagca gaagaacgga taagtgactt ggaagataaa atagtggaaa taactaccac
     3721 agagaagaat aaagtaaaac gaatgaaaaa aattgaggac agtgtcagag acctcaggga
     3781 caacattaaa cgccaaaaca ttcgtattgt aagggtccca gaagaagaag agaaacagaa
     3841 aggaactaag aaaatttttg aagagattat agttgaaaac ttccctaata tgggaaagga
     3901 aatagttaat caagtccagg aagcacagag agtcccttac aggataaatc caaggagaaa
     3961 catgccaaga cacatattaa tcaaactatc taaaattaaa taaaaagaaa acatattaaa
     4021 agcaacaagg gaaaaacaat aaataacaca caagtgaatg cccataatgt caacagctga
     4081 tctttcagca gaaacttagc aagccagaag agagtggcag gacatattta aagagatgaa
     4141 ggagaaaaac cacaaccaag gttactgtaa ccgcaaagat ctccttcaga tttgatggag
     4201 aaattaaaac ctttatagat aagcaaaagc tgtgagagtt cagcaccata aaaccagctt
     4261 tacaacaaat gctaaaggaa cttctctagg caagaaacac aagagaagga aaagacctac
     4321 aatac
//
LOCUS       XM_032618614            4091 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylamine N-acetyltransferase 1
            (LOC116746861), transcript variant X3, mRNA.
ACCESSION   XM_032618614
VERSION     XM_032618614.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4091
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4091
                     /gene="LOC116746861"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 2 long SRA reads, 24
                     Proteins, and 83% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746861"
     CDS             375..1247
                     /gene="LOC116746861"
                     /codon_start=1
                     /product="arylamine N-acetyltransferase 1"
                     /protein_id="XP_032474505.1"
                     /db_xref="GeneID:116746861"
                     /translation="MNIEAYFERIGYKHYRNKLDLETLTDILQHQIRAIPFENLNIHC
                     GEAMELGLEDTFDQIVRRNRGGWCLQVNHLLYWALTTIGFETTILGGYVYNTSANKYS
                     DAMIHLLLKVTIDGRNYIADAGFGRSYQMWQPLELISRKDQPQVPCIFCLTEERGIWY
                     LDQIRREQYIPNQEFLNSELLEKNKYRKIYSFTLEPRTIEDFESVNIYLQESPASVFT
                     SKSFCSLQTPEGVHCLVGFTLTYRRFNYKDNTDLVEFNTLNEEEVKENLKNIFNISLE
                     KKLVPKHGDKFFTI"
     misc_feature    432..1214
                     /gene="LOC116746861"
                     /note="N-acetyltransferase; Region: Acetyltransf_2;
                     pfam00797"
                     /db_xref="CDD:395644"
ORIGIN      
        1 aataacaagc attcatttgg tgacagaaga agtctctttt gcctgacttt caaggccctc
       61 tggaagtttc ctcatccctt acatcttacc tttctttcat acagctctcc aaaatgacca
      121 ctgatatgac ttgtcaggtt ccccagattt agacgctgag gccaggacta tgtgcaagtg
      181 gcttatgatg tgctcctggg agaactccag tgccagcttg aatgtgaatt ataactcaaa
      241 gtctttccag actcaaggca aggcagctga gttttcagaa catctcacca agtgaactag
      301 gaagaagaac tatcctaagt cttctgaatt aaaactgaga ctcagtctac attgaacttc
      361 ctcagaaagg aatcatgaac attgaagcat attttgaaag aattggttat aagcactata
      421 ggaacaagtt ggacttggaa acattaactg acattcttca gcaccagatc cgagccattc
      481 cctttgagaa tcttaacatc cattgtgggg aagccatgga attgggctta gaggacactt
      541 ttgatcaaat tgtgaggagg aaccgaggtg ggtggtgtct ccaagtcaat catcttctgt
      601 actgggctct gaccacaatt ggttttgaga ccactatact gggagggtat gtatacaaca
      661 cttcagcaaa caaatacagc gatgccatga ttcacctcct gctgaaggtg accattgatg
      721 gcaggaacta catagctgat gctggatttg gacgctctta ccagatgtgg cagcctctag
      781 agttaatttc taggaaggat cagccccagg tgccttgcat cttctgcttg acagaagaga
      841 gaggaatctg gtacctagac caaatcagaa gagagcagta tatcccaaac caagaatttc
      901 ttaattctga gctcctggaa aagaataaat atcggaaaat ctactctttt actcttgaac
      961 ctcgaacaat tgaagacttt gagtctgtga atatatacct tcaggaatct ccagcatctg
     1021 tctttacaag caagtcattt tgttccttgc agaccccaga aggtgttcac tgtttagtgg
     1081 gcttcaccct cacctacagg agattcaatt ataaggacaa tacagatttg gtagagttta
     1141 acacactgaa tgaagaagaa gtaaaagaaa atctaaaaaa tatatttaat atttccttgg
     1201 agaaaaagct tgtccccaaa catggtgata aattttttac catatagtgt aagcagtaaa
     1261 aatggtctca gtattacttc tggtgctgta aattttatta taaaaaagtt taaacgtcta
     1321 taaaagtaga gagaatgaaa taataaacct gcatttgttt atcactcagt ttatcagcta
     1381 taaactagag gcttatcata ttttctcaat gctcccacat tatattgaag aaaatgctag
     1441 atatcaaatc atttcacctt taaaaatgtc agcatatata attagataac atttaagaaa
     1501 acataaccat atatcttttc aaaaataata atagcaaaga tgttttaatg atggcctatg
     1561 gttttcttga ggaaaaagtg atttatgcta gaaaactttc cacattggtt aatgttgatt
     1621 tcataaaaca tgtttaccta taactcagta actagaacct tgagggaaac ttttttatta
     1681 aattctacca gtgtatatcc aatgtcatat ttgtgcagaa ataccacatg tataatggga
     1741 ttataattca accaaaaaga aagagacatg acattgtttc caaataacct aatatttctc
     1801 aagacaaagt gtaaaccaat acttgttagc atgtgatcaa gtaccaagag agggacacca
     1861 ctaataattt cttacatggc tctttttgca accacagatc ttcaagtacc atttttctta
     1921 atatgggaac actactattt ataattttca aattttggaa ctcagtattt ttgcttaaaa
     1981 gtaataagta ctgcaaattt aaaaatactt attatctaaa aacttcatat tagaaaagta
     2041 tgttaaaaca tgttggccaa tacaatatca gtcataaaat ttttgtttgg cagagttagg
     2101 ttattatggg gtttcttttt ttgttttttc cctgcagtag agtcttcctt gaatcctcgt
     2161 tcttgtctcc cagctctatt cttttacttc cttttacact ttgttgtaag agaaagagta
     2221 tgtgcttcaa agtatacagt tctgagttca aatcctgtgg acaccaggtg aattaattga
     2281 tgaatctgtg gctcccattc ctcagggata aaatggggac aatacctata taagtgccaa
     2341 acctaaagca ccatcttcct tccctctcat tggccttgtt cagctctgct gctatcttgc
     2401 agcatggtta ggtcatgtat ggtactgttg gacagaaagg attttctcac attctgaaaa
     2461 gacaatgcca agggaggaga tgtaggcaag agatacattc cagatcaaaa tgtggctcaa
     2521 gagaggacct tcaagatggt ggaggactca aatatggagg tcacctcccc acaaatacat
     2581 caaaaatata tctatatgtg gaacaactcc tacagaacac ctactgaaca ctgacagaag
     2641 atctcagact tcccaaaagg caaggaaatc cccacctacc tggccgtgtg gctgacaggg
     2701 acttggtgct ccagcaggat gtcaggcctg agcctctgag gtgggagaga caagttcagg
     2761 acgtgggacc agcagagaca tcctgaccat acgtaatatc aatcactgag agttccccaa
     2821 agatctccgt ctcaacacta agaaacaact ccactcaatg accagcaagc tgcagtgctg
     2881 gacaccccat gacaaacaac cagcaaggaa cacaaacaca tccattagca gagagactgc
     2941 ctaaaatcat aagaagttca cagacacccc aaaacacacc accagacata gtcctgccca
     3001 ccagacagac aagatgcagc ctcatccacc aaaacacagg caccagtccc ctccagtggg
     3061 aagcctacac aacccactga actaacctta cccactgggg gcagacaaaa agaccacagg
     3121 aactacaagc ctgcagtctg cacaaaggaa tacacaatat gttaagcaaa atgagaagag
     3181 aaatatgcag cagatgaaag agcaaggtaa aaacccacca gaccaaacaa atggagagga
     3241 aataggaaat ctacctgaaa agaattcaga gtaatgatag taaagatgat ccaaaatctt
     3301 gaaatagaat ggagaaacac aagaaacgtt taacaaggac ctagaagaac taaagagcaa
     3361 gcaaacaatg atgaacaaca caataaatga aatgaaaaat cctctagaag gaatcaatag
     3421 caggataaat aaagcagaag aacggataag tgacttggaa gataaaatag tggaaataac
     3481 taccacagag aagaataaag taaaacgaat gaaaaaaatt gaggacagtg tcagagacct
     3541 cagggacaac attaaacgcc aaaacattcg tattgtaagg gtcccagaag aagaagagaa
     3601 acagaaagga actaagaaaa tttttgaaga gattatagtt gaaaacttcc ctaatatggg
     3661 aaaggaaata gttaatcaag tccaggaagc acagagagtc ccttacagga taaatccaag
     3721 gagaaacatg ccaagacaca tattaatcaa actatctaaa attaaataaa aagaaaacat
     3781 attaaaagca acaagggaaa aacaataaat aacacacaag tgaatgccca taatgtcaac
     3841 agctgatctt tcagcagaaa cttagcaagc cagaagagag tggcaggaca tatttaaaga
     3901 gatgaaggag aaaaaccaca accaaggtta ctgtaaccgc aaagatctcc ttcagatttg
     3961 atggagaaat taaaaccttt atagataagc aaaagctgtg agagttcagc accataaaac
     4021 cagctttaca acaaatgcta aaggaacttc tctaggcaag aaacacaaga gaaggaaaag
     4081 acctacaata c
//
LOCUS       XM_032618615            4009 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylamine N-acetyltransferase 1
            (LOC116746861), transcript variant X4, mRNA.
ACCESSION   XM_032618615
VERSION     XM_032618615.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4009
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4009
                     /gene="LOC116746861"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 2 long SRA reads, 24
                     Proteins, and 83% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746861"
     CDS             293..1165
                     /gene="LOC116746861"
                     /codon_start=1
                     /product="arylamine N-acetyltransferase 1"
                     /protein_id="XP_032474506.1"
                     /db_xref="GeneID:116746861"
                     /translation="MNIEAYFERIGYKHYRNKLDLETLTDILQHQIRAIPFENLNIHC
                     GEAMELGLEDTFDQIVRRNRGGWCLQVNHLLYWALTTIGFETTILGGYVYNTSANKYS
                     DAMIHLLLKVTIDGRNYIADAGFGRSYQMWQPLELISRKDQPQVPCIFCLTEERGIWY
                     LDQIRREQYIPNQEFLNSELLEKNKYRKIYSFTLEPRTIEDFESVNIYLQESPASVFT
                     SKSFCSLQTPEGVHCLVGFTLTYRRFNYKDNTDLVEFNTLNEEEVKENLKNIFNISLE
                     KKLVPKHGDKFFTI"
     misc_feature    350..1132
                     /gene="LOC116746861"
                     /note="N-acetyltransferase; Region: Acetyltransf_2;
                     pfam00797"
                     /db_xref="CDD:395644"
ORIGIN      
        1 tgagcctcgg caccagaaaa agctctccaa aatgaccact gatatgactt gtcaggttcc
       61 ccagatttag acgctgaggc caggactatg tgcaagtggc ttatgatgtg ctcctgggag
      121 aactccagtg ccagcttgaa tgtgaattat aactcaaagt ctttccagac tcaaggcaag
      181 gcagctgagt tttcagaaca tctcaccaag tgaactagga agaagaacta tcctaagtct
      241 tctgaattaa aactgagact cagtctacat tgaacttcct cagaaaggaa tcatgaacat
      301 tgaagcatat tttgaaagaa ttggttataa gcactatagg aacaagttgg acttggaaac
      361 attaactgac attcttcagc accagatccg agccattccc tttgagaatc ttaacatcca
      421 ttgtggggaa gccatggaat tgggcttaga ggacactttt gatcaaattg tgaggaggaa
      481 ccgaggtggg tggtgtctcc aagtcaatca tcttctgtac tgggctctga ccacaattgg
      541 ttttgagacc actatactgg gagggtatgt atacaacact tcagcaaaca aatacagcga
      601 tgccatgatt cacctcctgc tgaaggtgac cattgatggc aggaactaca tagctgatgc
      661 tggatttgga cgctcttacc agatgtggca gcctctagag ttaatttcta ggaaggatca
      721 gccccaggtg ccttgcatct tctgcttgac agaagagaga ggaatctggt acctagacca
      781 aatcagaaga gagcagtata tcccaaacca agaatttctt aattctgagc tcctggaaaa
      841 gaataaatat cggaaaatct actcttttac tcttgaacct cgaacaattg aagactttga
      901 gtctgtgaat atataccttc aggaatctcc agcatctgtc tttacaagca agtcattttg
      961 ttccttgcag accccagaag gtgttcactg tttagtgggc ttcaccctca cctacaggag
     1021 attcaattat aaggacaata cagatttggt agagtttaac acactgaatg aagaagaagt
     1081 aaaagaaaat ctaaaaaata tatttaatat ttccttggag aaaaagcttg tccccaaaca
     1141 tggtgataaa ttttttacca tatagtgtaa gcagtaaaaa tggtctcagt attacttctg
     1201 gtgctgtaaa ttttattata aaaaagttta aacgtctata aaagtagaga gaatgaaata
     1261 ataaacctgc atttgtttat cactcagttt atcagctata aactagaggc ttatcatatt
     1321 ttctcaatgc tcccacatta tattgaagaa aatgctagat atcaaatcat ttcaccttta
     1381 aaaatgtcag catatataat tagataacat ttaagaaaac ataaccatat atcttttcaa
     1441 aaataataat agcaaagatg ttttaatgat ggcctatggt tttcttgagg aaaaagtgat
     1501 ttatgctaga aaactttcca cattggttaa tgttgatttc ataaaacatg tttacctata
     1561 actcagtaac tagaaccttg agggaaactt ttttattaaa ttctaccagt gtatatccaa
     1621 tgtcatattt gtgcagaaat accacatgta taatgggatt ataattcaac caaaaagaaa
     1681 gagacatgac attgtttcca aataacctaa tatttctcaa gacaaagtgt aaaccaatac
     1741 ttgttagcat gtgatcaagt accaagagag ggacaccact aataatttct tacatggctc
     1801 tttttgcaac cacagatctt caagtaccat ttttcttaat atgggaacac tactatttat
     1861 aattttcaaa ttttggaact cagtattttt gcttaaaagt aataagtact gcaaatttaa
     1921 aaatacttat tatctaaaaa cttcatatta gaaaagtatg ttaaaacatg ttggccaata
     1981 caatatcagt cataaaattt ttgtttggca gagttaggtt attatggggt ttcttttttt
     2041 gttttttccc tgcagtagag tcttccttga atcctcgttc ttgtctccca gctctattct
     2101 tttacttcct tttacacttt gttgtaagag aaagagtatg tgcttcaaag tatacagttc
     2161 tgagttcaaa tcctgtggac accaggtgaa ttaattgatg aatctgtggc tcccattcct
     2221 cagggataaa atggggacaa tacctatata agtgccaaac ctaaagcacc atcttccttc
     2281 cctctcattg gccttgttca gctctgctgc tatcttgcag catggttagg tcatgtatgg
     2341 tactgttgga cagaaaggat tttctcacat tctgaaaaga caatgccaag ggaggagatg
     2401 taggcaagag atacattcca gatcaaaatg tggctcaaga gaggaccttc aagatggtgg
     2461 aggactcaaa tatggaggtc acctccccac aaatacatca aaaatatatc tatatgtgga
     2521 acaactccta cagaacacct actgaacact gacagaagat ctcagacttc ccaaaaggca
     2581 aggaaatccc cacctacctg gccgtgtggc tgacagggac ttggtgctcc agcaggatgt
     2641 caggcctgag cctctgaggt gggagagaca agttcaggac gtgggaccag cagagacatc
     2701 ctgaccatac gtaatatcaa tcactgagag ttccccaaag atctccgtct caacactaag
     2761 aaacaactcc actcaatgac cagcaagctg cagtgctgga caccccatga caaacaacca
     2821 gcaaggaaca caaacacatc cattagcaga gagactgcct aaaatcataa gaagttcaca
     2881 gacaccccaa aacacaccac cagacatagt cctgcccacc agacagacaa gatgcagcct
     2941 catccaccaa aacacaggca ccagtcccct ccagtgggaa gcctacacaa cccactgaac
     3001 taaccttacc cactgggggc agacaaaaag accacaggaa ctacaagcct gcagtctgca
     3061 caaaggaata cacaatatgt taagcaaaat gagaagagaa atatgcagca gatgaaagag
     3121 caaggtaaaa acccaccaga ccaaacaaat ggagaggaaa taggaaatct acctgaaaag
     3181 aattcagagt aatgatagta aagatgatcc aaaatcttga aatagaatgg agaaacacaa
     3241 gaaacgttta acaaggacct agaagaacta aagagcaagc aaacaatgat gaacaacaca
     3301 ataaatgaaa tgaaaaatcc tctagaagga atcaatagca ggataaataa agcagaagaa
     3361 cggataagtg acttggaaga taaaatagtg gaaataacta ccacagagaa gaataaagta
     3421 aaacgaatga aaaaaattga ggacagtgtc agagacctca gggacaacat taaacgccaa
     3481 aacattcgta ttgtaagggt cccagaagaa gaagagaaac agaaaggaac taagaaaatt
     3541 tttgaagaga ttatagttga aaacttccct aatatgggaa aggaaatagt taatcaagtc
     3601 caggaagcac agagagtccc ttacaggata aatccaagga gaaacatgcc aagacacata
     3661 ttaatcaaac tatctaaaat taaataaaaa gaaaacatat taaaagcaac aagggaaaaa
     3721 caataaataa cacacaagtg aatgcccata atgtcaacag ctgatctttc agcagaaact
     3781 tagcaagcca gaagagagtg gcaggacata tttaaagaga tgaaggagaa aaaccacaac
     3841 caaggttact gtaaccgcaa agatctcctt cagatttgat ggagaaatta aaacctttat
     3901 agataagcaa aagctgtgag agttcagcac cataaaacca gctttacaac aaatgctaaa
     3961 ggaacttctc taggcaagaa acacaagaga aggaaaagac ctacaatac
//
LOCUS       XM_032618616            6346 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylamine N-acetyltransferase 1
            (LOC116746861), transcript variant X5, mRNA.
ACCESSION   XM_032618616
VERSION     XM_032618616.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6346
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6346
                     /gene="LOC116746861"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 5 long SRA reads, 24
                     Proteins, and 53% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746861"
     CDS             2630..3502
                     /gene="LOC116746861"
                     /codon_start=1
                     /product="arylamine N-acetyltransferase 1"
                     /protein_id="XP_032474507.1"
                     /db_xref="GeneID:116746861"
                     /translation="MNIEAYFERIGYKHYRNKLDLETLTDILQHQIRAIPFENLNIHC
                     GEAMELGLEDTFDQIVRRNRGGWCLQVNHLLYWALTTIGFETTILGGYVYNTSANKYS
                     DAMIHLLLKVTIDGRNYIADAGFGRSYQMWQPLELISRKDQPQVPCIFCLTEERGIWY
                     LDQIRREQYIPNQEFLNSELLEKNKYRKIYSFTLEPRTIEDFESVNIYLQESPASVFT
                     SKSFCSLQTPEGVHCLVGFTLTYRRFNYKDNTDLVEFNTLNEEEVKENLKNIFNISLE
                     KKLVPKHGDKFFTI"
     misc_feature    2687..3469
                     /gene="LOC116746861"
                     /note="N-acetyltransferase; Region: Acetyltransf_2;
                     pfam00797"
                     /db_xref="CDD:395644"
ORIGIN      
        1 ttcctgggct tgtccaggaa gtgggaagat ggcagtcagc ccggttcctg gttgtgggac
       61 ccaggggagc tcgagtgaac taggaagaag aactatccta agtcttctga attaaaactg
      121 agactcagtc tacattgaac ttcctcagaa aggtatgctt ttctgagaca tctcagctgg
      181 atccctaagt gtgttcactc tccctccttt tattcttttc ttatatttat gatcaaagaa
      241 aatgaaatgg tatatcagtg cacatctaaa ttataagtca atatataaac tttgcagtgt
      301 tttcacccag ttttatcctg acaactactt tctagtgcct ccatatttca ccttctatct
      361 aacttcagta gtacaaaatc tcttatattt agtcacagaa tatgcagata taatttggtt
      421 ataacatgtt gcttgcatcc agaccctggc ttcttctcaa tgaacttgaa gttactaaat
      481 tctaaagtaa cataatattt ttttaacatc tttattggag tataattgct ttacattgtt
      541 gtgttagttt ctgctgtata acaaagtgaa tcaactatat gtacacatat atccccatat
      601 cccctccaga ggaacaaaga aaaatcttta aaatcaaaat atagctttaa aaaatataca
      661 ttaatatcca aataaaaagt tgttggttaa cccagaaatg aaatggccag gcagttacaa
      721 atcatattgc ttttgttcca catcacctgc cctccttact tacccagcac tgattctgga
      781 tacagaagca gaagagggtc tgtggtggtc tggctaagta ccagttgttc tcttggtgtc
      841 tgagtcgtag agtttttggc ttgtgctgat gcatgtaaag atgagaagaa atgaaataag
      901 cttaagagat ttggaggata tcagattgca gacatcaaga atagaaaaag ttgaaacact
      961 agcaaaatgg gaagaataac cgatcaaaaa agagaattag gtgaatctga aagaaaatga
     1021 caacaggaag gacaacagga atacataact tatcaccata acctaggggc agggcctttt
     1081 gtaacctcgc acctcagacc atgtcatctt atcaatggta atgcaccact gtttacatca
     1141 gtgttcacac tggattatga ctctggtatc aggggacaga aacatttcct atatgagatt
     1201 ttacaaaata aggacttttt tatttttttc tggttcacct tacaataaag tcaagatata
     1261 gcttaaaact tgatttttgt cttttctcat ctttcctttt cctgcttttc attcctcaac
     1321 tcaataaatt ctttgttgat attattcttc agcacgttct cctagtagat ttgagcaaat
     1381 atcctaccag gttctggccc tgcagtagaa gcatctgctt aggtttcagc aaaagttcct
     1441 caacagagta tcattgaact gacttggacc acatgccatc cacgtgcaaa acactgctcc
     1501 tagagaaaat gtgctttgaa ttgcgcctac cctggtcata tgtctattca ttcagctcag
     1561 tatgtacagc tcactctcca tacaagccag acataacaat ttgatgattg tgcattttgc
     1621 ccaaactgca gcttccccta ctgccttctt acagtgatta ctcatctccg agtaaaagac
     1681 aaatggtcag atctcatctc aatccatgct tccacttact ccctctgctc ccttcatctt
     1741 gtcttccttg aatgttcttt ggaaactcta ggcaggttcc agtttagggc tttttttttt
     1801 ttctaaccct ctgtccttct tcctaaattg tcccctcaca tttgtggaca tggctcattc
     1861 tctcacatcc ttaaagtcat agtgaagctt cctctgccca ccttattgga aactgaagct
     1921 ctctctgtgc acatcttatc taccttcttt gctttatttt tcccagaata cttatcacta
     1981 tctaagaaat tcatgttttt aaaattcatt taattcactg tgtcatacca gaccccacta
     2041 aattgtaaga ttctttaaga ttagcaacca ctaggtcagt aacatataca taatagattt
     2101 tcagtaaact atttattgaa taaatcaata aatcagtttg tgaatgaata tgaatctttg
     2161 agtggggaaa tttgtgtaag gttcagttga agaagatatt gagttggtca agtaccatga
     2221 atgaaagtac tatattataa ttctcctgtt tgtattagaa actgtttgta aactctattt
     2281 taattgatag caacttgtac ctctccttat tcatcaccaa aaaaactaca tgtaaggtct
     2341 ttaccatttt actcatcact tcatctggat ttccaacttc tcatgctcaa aacatggaag
     2401 aagtgataat acttttcttt cagggttact cgcaccatta actgaactta tgcatgtgaa
     2461 agccactaat acactaaaag cacacacaaa aaaaggctta taattacagt tatttataac
     2521 cattgtttgt gtttacatgt ttaaaataca tttgttatca ttaggctaat caaagaaatt
     2581 caagtacaag agtaatattt ttgttttgtt ttccttgcct taaggaatca tgaacattga
     2641 agcatatttt gaaagaattg gttataagca ctataggaac aagttggact tggaaacatt
     2701 aactgacatt cttcagcacc agatccgagc cattcccttt gagaatctta acatccattg
     2761 tggggaagcc atggaattgg gcttagagga cacttttgat caaattgtga ggaggaaccg
     2821 aggtgggtgg tgtctccaag tcaatcatct tctgtactgg gctctgacca caattggttt
     2881 tgagaccact atactgggag ggtatgtata caacacttca gcaaacaaat acagcgatgc
     2941 catgattcac ctcctgctga aggtgaccat tgatggcagg aactacatag ctgatgctgg
     3001 atttggacgc tcttaccaga tgtggcagcc tctagagtta atttctagga aggatcagcc
     3061 ccaggtgcct tgcatcttct gcttgacaga agagagagga atctggtacc tagaccaaat
     3121 cagaagagag cagtatatcc caaaccaaga atttcttaat tctgagctcc tggaaaagaa
     3181 taaatatcgg aaaatctact cttttactct tgaacctcga acaattgaag actttgagtc
     3241 tgtgaatata taccttcagg aatctccagc atctgtcttt acaagcaagt cattttgttc
     3301 cttgcagacc ccagaaggtg ttcactgttt agtgggcttc accctcacct acaggagatt
     3361 caattataag gacaatacag atttggtaga gtttaacaca ctgaatgaag aagaagtaaa
     3421 agaaaatcta aaaaatatat ttaatatttc cttggagaaa aagcttgtcc ccaaacatgg
     3481 tgataaattt tttaccatat agtgtaagca gtaaaaatgg tctcagtatt acttctggtg
     3541 ctgtaaattt tattataaaa aagtttaaac gtctataaaa gtagagagaa tgaaataata
     3601 aacctgcatt tgtttatcac tcagtttatc agctataaac tagaggctta tcatattttc
     3661 tcaatgctcc cacattatat tgaagaaaat gctagatatc aaatcatttc acctttaaaa
     3721 atgtcagcat atataattag ataacattta agaaaacata accatatatc ttttcaaaaa
     3781 taataatagc aaagatgttt taatgatggc ctatggtttt cttgaggaaa aagtgattta
     3841 tgctagaaaa ctttccacat tggttaatgt tgatttcata aaacatgttt acctataact
     3901 cagtaactag aaccttgagg gaaacttttt tattaaattc taccagtgta tatccaatgt
     3961 catatttgtg cagaaatacc acatgtataa tgggattata attcaaccaa aaagaaagag
     4021 acatgacatt gtttccaaat aacctaatat ttctcaagac aaagtgtaaa ccaatacttg
     4081 ttagcatgtg atcaagtacc aagagaggga caccactaat aatttcttac atggctcttt
     4141 ttgcaaccac agatcttcaa gtaccatttt tcttaatatg ggaacactac tatttataat
     4201 tttcaaattt tggaactcag tatttttgct taaaagtaat aagtactgca aatttaaaaa
     4261 tacttattat ctaaaaactt catattagaa aagtatgtta aaacatgttg gccaatacaa
     4321 tatcagtcat aaaatttttg tttggcagag ttaggttatt atggggtttc tttttttgtt
     4381 ttttccctgc agtagagtct tccttgaatc ctcgttcttg tctcccagct ctattctttt
     4441 acttcctttt acactttgtt gtaagagaaa gagtatgtgc ttcaaagtat acagttctga
     4501 gttcaaatcc tgtggacacc aggtgaatta attgatgaat ctgtggctcc cattcctcag
     4561 ggataaaatg gggacaatac ctatataagt gccaaaccta aagcaccatc ttccttccct
     4621 ctcattggcc ttgttcagct ctgctgctat cttgcagcat ggttaggtca tgtatggtac
     4681 tgttggacag aaaggatttt ctcacattct gaaaagacaa tgccaaggga ggagatgtag
     4741 gcaagagata cattccagat caaaatgtgg ctcaagagag gaccttcaag atggtggagg
     4801 actcaaatat ggaggtcacc tccccacaaa tacatcaaaa atatatctat atgtggaaca
     4861 actcctacag aacacctact gaacactgac agaagatctc agacttccca aaaggcaagg
     4921 aaatccccac ctacctggcc gtgtggctga cagggacttg gtgctccagc aggatgtcag
     4981 gcctgagcct ctgaggtggg agagacaagt tcaggacgtg ggaccagcag agacatcctg
     5041 accatacgta atatcaatca ctgagagttc cccaaagatc tccgtctcaa cactaagaaa
     5101 caactccact caatgaccag caagctgcag tgctggacac cccatgacaa acaaccagca
     5161 aggaacacaa acacatccat tagcagagag actgcctaaa atcataagaa gttcacagac
     5221 accccaaaac acaccaccag acatagtcct gcccaccaga cagacaagat gcagcctcat
     5281 ccaccaaaac acaggcacca gtcccctcca gtgggaagcc tacacaaccc actgaactaa
     5341 ccttacccac tgggggcaga caaaaagacc acaggaacta caagcctgca gtctgcacaa
     5401 aggaatacac aatatgttaa gcaaaatgag aagagaaata tgcagcagat gaaagagcaa
     5461 ggtaaaaacc caccagacca aacaaatgga gaggaaatag gaaatctacc tgaaaagaat
     5521 tcagagtaat gatagtaaag atgatccaaa atcttgaaat agaatggaga aacacaagaa
     5581 acgtttaaca aggacctaga agaactaaag agcaagcaaa caatgatgaa caacacaata
     5641 aatgaaatga aaaatcctct agaaggaatc aatagcagga taaataaagc agaagaacgg
     5701 ataagtgact tggaagataa aatagtggaa ataactacca cagagaagaa taaagtaaaa
     5761 cgaatgaaaa aaattgagga cagtgtcaga gacctcaggg acaacattaa acgccaaaac
     5821 attcgtattg taagggtccc agaagaagaa gagaaacaga aaggaactaa gaaaattttt
     5881 gaagagatta tagttgaaaa cttccctaat atgggaaagg aaatagttaa tcaagtccag
     5941 gaagcacaga gagtccctta caggataaat ccaaggagaa acatgccaag acacatatta
     6001 atcaaactat ctaaaattaa ataaaaagaa aacatattaa aagcaacaag ggaaaaacaa
     6061 taaataacac acaagtgaat gcccataatg tcaacagctg atctttcagc agaaacttag
     6121 caagccagaa gagagtggca ggacatattt aaagagatga aggagaaaaa ccacaaccaa
     6181 ggttactgta accgcaaaga tctccttcag atttgatgga gaaattaaaa cctttataga
     6241 taagcaaaag ctgtgagagt tcagcaccat aaaaccagct ttacaacaaa tgctaaagga
     6301 acttctctag gcaagaaaca caagagaagg aaaagaccta caatac
//
LOCUS       XR_004347900            1856 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylamine N-acetyltransferase 1
            (LOC116746861), transcript variant X6, misc_RNA.
ACCESSION   XR_004347900
VERSION     XR_004347900.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1856
                     /gene="LOC116746861"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746861"
     misc_RNA        1..1856
                     /gene="LOC116746861"
                     /product="arylamine N-acetyltransferase 1, transcript
                     variant X6"
                     /db_xref="GeneID:116746861"
ORIGIN      
        1 agatggcagt cagcccggtt cctggttgtg ggacccaggg gagctcgagt gaactaggaa
       61 gaagaactat cctaagtctt ctgaattaaa actgagactc agtctacatt gaacttcctc
      121 agaaagataa tcctgtagag aaacaaacct cagagaactg attccttaag agactttgga
      181 caggaagacc tggacactga agatggagaa tcagcctgca gccatgagtt cggaaaaaag
      241 ttcagaaaag gagaagagga aggacagcag cacaacctgt aatcatgaca atggtgcaga
      301 tggttacaag tgaaatcttg gcattggctt ttctgatatt cattgtattt tttttttttg
      361 aaagccattc ttgtagaaga gtcttattgg aaagtaattt cataacatga gttcctgtta
      421 gtacagcatt cacagacctc agcatgttat ctgagtagct tggggtctgc taaagtttag
      481 gtattgctat tccagaccag atagtctata tgagccctta aactaggaat tcagaatgaa
      541 gaaattattt gagaatagta gaattatata gttaataaat tgtgggtagc tttaactaaa
      601 caattagagt tgatatttca gccttttaca atgagcatgt acagtcatcc ctcagtaggt
      661 tgttggaata atgattacgt aaacctgtat gttagttatt ctccattttc tgaacacttc
      721 ctatccagct gtagagctgg aagcatcaaa tagaagaaga tgaggtaacc cagtaattag
      781 gtgccacagg aaataggcac cacccctagg gctgggagaa cctaaagagg caaaagaggc
      841 tactgcttca gaacaggaac ttggaggaga ttcctccaga acaagaattt aaaaagacag
      901 aggtagaagg aagagaaaaa gagcaagaaa gaattatagt ttctcctcat ctcccatcta
      961 ctaatcacct accaatatct cctcttggtg aaactaaata gaaaaccact ggtaaagaat
     1021 atgagaacta cattttgcag attcccacaa cagattacaa aaaagtatca aaggataatt
     1081 gggggactga aagagaacag gtaaatatcc agcacccctc acaaaagggc cccaagaaag
     1141 aagtcaacct gtctctgtga tgtgtccaat ttctccatct ccatagtttc ttcctttcac
     1201 acatacaagg caatgaacaa ggacgtattt tcctcactta cagcaaatat cactgtccca
     1261 gaagaaatcc ttttaacatt aataatcctt aacctcctcc tgcccacaac attggattat
     1321 ctatatatcc tatgtgtaat caagaatcat tttataaatc atacaaggtg tgaggactgg
     1381 ggcacttttg tagtagtata aagcatttaa gcatttgttt ttatttttca tgttaatcaa
     1441 atatataagc atgcaaagga gaattacaat aataaggtct gtaggggaat tggggaaaaa
     1501 attctaaccc tgattctttc cacactacca gacccattat tctatagttt ttatcccagt
     1561 ttacagcatc accattgagc aagacagaaa catggggatc atatttacct ttaccttcat
     1621 atcttttcag gcatcgaatg atgtggattt ttcttcctga atatttttca aacatgtttc
     1681 atcacatcta ctacacatta gacattcatt ccttcttgcc tagacaaata caagagtttt
     1741 ctcaagtggt aagcaaacaa gaacccatgt tcaattggga aaacagacac agaatgaatt
     1801 cctttagagt gaggactgcc ttatatactt atgtatactg aacccatagg acagtg
//
LOCUS       XR_004347901            2214 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus arylamine N-acetyltransferase 1
            (LOC116746861), transcript variant X7, misc_RNA.
ACCESSION   XR_004347901
VERSION     XR_004347901.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2214
                     /gene="LOC116746861"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746861"
     misc_RNA        1..2214
                     /gene="LOC116746861"
                     /product="arylamine N-acetyltransferase 1, transcript
                     variant X7"
                     /db_xref="GeneID:116746861"
ORIGIN      
        1 agatggcagt cagcccggtt cctggttgtg ggacccaggg gagctcgagt gaactaggaa
       61 gaagaactat cctaagtctt ctgaattaaa actgagactc agtctacatt gaacttcctc
      121 agaaagataa tcctgtagag aaacaaacct cagagaactg attccttaag agactttgga
      181 caggaagacc tggacactga agatggagaa tcagcctgca gccatgagtt cggaaaaaag
      241 ttcagaaaag gagaagagga aggacagcag cacaacctgt aatcatgaca atggtgcaga
      301 tggttacaag tgaaatcttg gcattggctt ttctgatatt cattgtattt tttttttttg
      361 aaagccattc ttgtagaaga gtcttattgg aaagtaattt cataacatga gttcctgtta
      421 gtacagcatt cacagacctc agcatgttat ctgagtagct tggggtctgc taaagtttag
      481 gtattgctat tccagaccag atagtctata tgagccctta aactaggaat tcagaatgaa
      541 gaaattattt gagaatagta gaattatata gttaataaat tgtgggtagc tttaactaaa
      601 caattagagt tgatatttca gccttttaca atgagcatgt acagtcatcc ctcagtaggt
      661 tgttggaata atgattacgt aaacctgtat gttagttatt ctccattttc tgaacacttc
      721 ctatccagct gtagagctgg aagcatcaaa tagaagaaga tgaggtaacc cagtaattag
      781 gtgccacagg aaataggcac cacccctagg gctgggagaa cctaaagagg caaaagaggc
      841 tactgcttca gaacaggaac ttggaggaga ttcctccaga acaagaattt aaaaagacag
      901 aggtagaagg aagagaaaaa gagcaagaaa gaattatagt ttctcctcat ctcccatcta
      961 ctaatcacct accaatatct cctcttggtg aaactaaata gaaaaccact ggtaaagaat
     1021 atgagaacta cattttgcag attcccacaa cagattacaa aaaagtatca aaggataatt
     1081 gggggactga aagagaacag gtaaatatcc agcacccctc acaaaagggc cccaagaaag
     1141 aagtcaacct gtctctgtga tgtgtccaat ttctccatct ccatagtttc ttcctttcac
     1201 acatacaagg caatgaacaa ggacgtattt tcctcactta cagcaaatat cactgtccca
     1261 gaagaaatcc ttttaacatt aataatcctt aacctcctcc tgcccacaac attggattat
     1321 ctatatatcc tatgtgtaat caagaatcat tttataaatc atacaaggtg tgaggactgg
     1381 ggcacttttg tagtagtata aagcatttaa gcatttgttt ttatttttca tgttaatcaa
     1441 atatataagc atgcaaagga gaattacaat aataaggtct gtaggggaat tggggaaaaa
     1501 attctaaccc tgattctttc cacactacca gacccattat tctatagttt ttatcccagt
     1561 ttacagcatc accattgagc aagacagaaa catggggatc atatttacct ttaccttcat
     1621 atcttttcag gcatcgaatg atgtggattt ttcttcctga atatttttca aacatgtttc
     1681 atcacatcta ctacacatta gacattcatt ccttcttgcc tagacaaata caagagtttt
     1741 ctcaagtgat atttgacttt gttttcctac cttcctcact cccacttcca gaagggagcc
     1801 tgattccttt gattcaacca gttgaagtag gcatctcacc cagccattct tattggtcta
     1861 agggtggacc cctgcctaag atgaaccaga ctctccccca ggcttggacc acttctctct
     1921 tgcttctatt gaatgggaat aagaaagcat gttgaaccat ttgcttctgg gcatcatttt
     1981 gtaaccatga ggatgcacaa cattagaaga aagttaatgc tttgcccaga agattggaga
     2041 gacagaacaa ttgatatttt tctttgaact agtgactcca tcgactgtgg agactttgct
     2101 atgtctaggc ttcctgtttt gtgagatagt aaattttctc attaaatgaa ttggagcttt
     2161 ctcttactta tagccaagag aatcctaagt ggtttgttta attgtcatct tcta
//
LOCUS       XM_032618617            4915 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus myomesin 2 (MYOM2), transcript variant
            X1, mRNA.
ACCESSION   XM_032618617
VERSION     XM_032618617.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4915
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4915
                     /gene="MYOM2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746862"
     CDS             79..4575
                     /gene="MYOM2"
                     /codon_start=1
                     /product="myomesin-2 isoform X1"
                     /protein_id="XP_032474508.1"
                     /db_xref="GeneID:116746862"
                     /translation="MDSRPERKLVFKILLCGFSWVSTKMSLVAVPFYQKRHKHLDQSY
                     RNIQTRYLVDEYTAKKRASTQTSSQKSVTQESSSQRESSQTAPGGTTCRLCARRVSSA
                     LEEDEQERKHRYQSLVASYGEAKRERFLSELAQLEEDVHLARTHARDKLDRYALQHVD
                     RYALQHTVDDRLAWERHSREERLSRAPEILVQLRSHTIWEQMSVKLCFTVQGFPTPVV
                     QWYKDGSLVCQAGEPGKYRIESKYGVHTLEINRADFDDTATYSAVATNVHGQVSTNAA
                     VVVRRFRGDEEPLHSVGLPITVPLPSVIPHMHFDVQFLEKFGVTFRREGETLALKCTL
                     LVTPDLKRVQPRAEWYRDDVLLKESKWIKMFFGDGQALLSFSHLNKDDEGLYTLRIVS
                     RGGVSDHSAFLFVRDADPLVTGAPGAPMDLQCHDVNRDYVIVTWKPPNTTKESPVIGY
                     FVDRCEVGADSWVQCNDRPVKICKYPVTGLFEGRSYIFRVRAVNNAGISRPSRVSEAV
                     AALDPLDLKPLQAVHWEGDKEIVIYQEDLEGDVQVPGPPTNVHASEISRTYIVLSWDP
                     PAPRGKEPLMYFIEKSVVGSGSWQRENAQTAVRSPRYAVFDLAEGKPYVFRVLSANKH
                     GLSDPSEITAPIQAQDTIVVPSAPGHVVTSRNTRTSVVVQWDQPKHKEDLLGYYVDCC
                     MAGSTVWEPCNHKPIDYNRFVVHGLTTGEQYIFRVKAVNAVGTSENSQESDVIKVQAA
                     LTVPSHPYGITLLNCDGHSMTLGWKRPKYSGGSPILGYYIDKREAHHKNWHEVNASPL
                     QERILTVEGLAEGSLYEFRIAATNLVGIGQPSDPSELFKCEAWTAPEPGPAYDLTFCE
                     VRDTSLVLLWKAPVYSGSSPISGYFVDLNEEDSEEWITVNEATTAHRYLKVCHLHQGK
                     TYIFRVRAVNASGVGKPSDTSEPVLVEARPGTKEISAGVDEKGDIYLSFDCQEMTDAS
                     HFTWCKSYEDIAGDERFKVETVGDHSKLYFKNLDKVDLGTYSVSVSDTDGVSSSFVLD
                     EKELERLVTLSNEIKNPTIPLKSELAYEIFDKGQVRFWLQAEHLSPDASYRFIINDRE
                     VSDSETHRIKCDKSTGLIEMVMDQFSFENEGTYTVQIHDGKAKSQSSLVLIGDAFKAV
                     LEEAEFQRKEFLRKQGPHFAEYLHWDVTEDCEVRLVCKVANTKKETVFKWLKDDALYE
                     MEKLPDLEKGVCELLLPKLSKKDHGEYKATLKDERGQDVSVLEIAGKVYEDMILAMSR
                     VCGASASPLKILCTAEEIRLQCFMKYFTEEMKVNWYHKDAKIASGEHMRVGGSEEMAW
                     LKICEPTEKDKGKYTFEIFDGQDTHQRSLDLSGQAFDEAFAEFQQLKAAAFAEKNRGK
                     VLGGLPDVVTIMEGKTLNLTCTVFGNPDPDVMWFKNDRDIELSDHFLVKVEQAKYVSM
                     TIKGVTSEDSGKYSIHVKNKYGGEKIDVTVSVYKHGEKIPEVVLPQQAKPKLIPASAS
                     SPTQ"
     misc_feature    637..918
                     /gene="MYOM2"
                     /note="Immunoglobulin domain I1 of the titin I-band and
                     similar proteins; a member of the I-set of IgSF domains;
                     Region: IgI_titin_I1-like; cd20951"
                     /db_xref="CDD:409543"
     misc_feature    637..645
                     /gene="MYOM2"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409543"
     misc_feature    649..669
                     /gene="MYOM2"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409543"
     misc_feature    688..711
                     /gene="MYOM2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409543"
     misc_feature    727..744
                     /gene="MYOM2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409543"
     misc_feature    748..759
                     /gene="MYOM2"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409543"
     misc_feature    781..795
                     /gene="MYOM2"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409543"
     misc_feature    808..831
                     /gene="MYOM2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409543"
     misc_feature    850..876
                     /gene="MYOM2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409543"
     misc_feature    883..918
                     /gene="MYOM2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409543"
     misc_feature    1045..1293
                     /gene="MYOM2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1114..1128
                     /gene="MYOM2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1189..1203
                     /gene="MYOM2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1231..1248
                     /gene="MYOM2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1273..1284
                     /gene="MYOM2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1381..2778
                     /gene="MYOM2"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    2959..3162
                     /gene="MYOM2"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    3886..4473
                     /gene="MYOM2"
                     /note="IL-1 receptor-like protein; Provisional; Region:
                     PHA02826"
                     /db_xref="CDD:165173"
     misc_feature    4207..4482
                     /gene="MYOM2"
                     /note="C-terminal immunoglobulin (Ig)-like domain of
                     M-protein; member of the I-set of Ig superfamily (IgSF)
                     domains; Region: IgI_M-protein_C; cd05891"
                     /db_xref="CDD:143299"
     misc_feature    4207..4218
                     /gene="MYOM2"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:143299"
     misc_feature    4231..4248
                     /gene="MYOM2"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:143299"
     misc_feature    4258..4281
                     /gene="MYOM2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:143299"
     misc_feature    4300..4317
                     /gene="MYOM2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:143299"
     misc_feature    4324..4332
                     /gene="MYOM2"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:143299"
     misc_feature    4345..4365
                     /gene="MYOM2"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:143299"
     misc_feature    4375..4392
                     /gene="MYOM2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:143299"
     misc_feature    4420..4443
                     /gene="MYOM2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:143299"
     misc_feature    4450..4482
                     /gene="MYOM2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:143299"
ORIGIN      
        1 gctgcttcat tgcctgaaat gtgggattgt ttgagagggc tgagaacatt ctgattgccc
       61 tttggagcag ctgagaacat ggacagtagg ccagaaagga agctggtgtt taaaatcctg
      121 ctctgtggtt tctcttgggt gtccacaaag atgtcgcttg ttgctgtgcc cttctaccaa
      181 aagagacaca aacacttgga ccagtcatac cgtaatattc aaacaaggta ccttgtggat
      241 gagtacacag cgaaaaagcg cgcttccacc cagacgtctt cccagaaatc tgtcactcag
      301 gagtcgtcct cgcagagaga gtccagccag acggcaccgg gggggaccac ctgcaggttg
      361 tgtgccagga gggtgagctc cgcgctggaa gaggacgagc aggaaaggaa gcacaggtac
      421 cagtcactgg tggcttccta tggggaggcc aagcgggagc gtttcctcag cgagctggcc
      481 cagctggagg aggacgtgca cctggcccgc acccatgccc gggacaagct ggacagatac
      541 gccctgcagc acgtggacag atacgccctg cagcacacgg tggacgacag gctggcctgg
      601 gagaggcact cacgtgagga gcggctgagc agagcccctg agatcctggt gcagctccgg
      661 tcacacacca tctgggaaca gatgtctgtc aagctgtgct tcaccgtgca gggcttccca
      721 acccccgtgg tgcagtggta taaagacggc agcttggtct gccaggcagg ggagccggga
      781 aagtacagga ttgagagcaa gtacggggtg cacacgctgg agatcaacag ggcggacttt
      841 gacgatactg cgacctactc ggcggtggcg acaaacgtgc acggacaggt gtccaccaat
      901 gcggcggtgg tggtgagaag attccgaggt gacgaggagc cgttgcattc tgtggggctc
      961 ccgatcacag tgcccttgcc ctccgtgatc ccgcacatgc acttcgacgt ccagtttctg
     1021 gagaaattcg gcgtcacctt ccggagggaa ggcgagacgc tggctctcaa gtgcacgctg
     1081 ctggtgacgc cggacctgaa gcgggtgcag ccgcgggccg agtggtaccg ggacgacgtg
     1141 ctgctgaagg agtccaagtg gataaagatg ttctttgggg acggccaggc cttgctgtcc
     1201 ttcagccacc tcaacaagga cgacgagggt ctctacactc tgaggatcgt gtccagggga
     1261 ggggtcagcg accacagcgc tttcctgttt gtccgagacg ctgaccccct ggtcacgggg
     1321 gcccctggcg cgcccatgga cctgcagtgc cacgatgtaa accgggatta tgtcatcgta
     1381 acttggaagc cacccaacac gaccaaggag agcccggtca tcggctattt tgttgatcga
     1441 tgtgaagtgg gagctgacag ttgggttcag tgcaatgacc gccccgtgaa gatctgtaaa
     1501 taccccgtaa ccggactttt tgaaggaagg tcctacatct tccgcgtgcg ggctgtcaac
     1561 aatgcaggga tcagccggcc ttccagagtc tctgaggctg tggctgccct cgaccccctt
     1621 gacctcaaac cgttacaagc agtccactgg gagggagata aagaaatcgt aatctatcag
     1681 gaggaccttg aaggtgatgt tcaggttcca ggacctccca ccaacgtcca cgcctcagaa
     1741 atcagcagga catacatcgt cctcagctgg gacccacctg ccccccgtgg caaggagccg
     1801 ctgatgtatt tcattgagaa gtccgtggtc gggagcggaa gctggcagcg ggagaacgca
     1861 cagacggccg tgaggtcccc ccgatacgct gtcttcgatc ttgccgaggg gaaaccatac
     1921 gtgttccgag tgttgtcagc aaataagcat ggcctgagtg acccgtcgga aatcaccgcc
     1981 cccattcagg cccaggacac catcgtggtc ccctcagccc ccggccacgt cgttacctcc
     2041 cggaacacaa ggacgtcagt ggtggtgcag tgggaccagc cgaagcacaa ggaggacctg
     2101 ctcggctact acgtggactg ctgcatggcc gggtccactg tctgggagcc ctgtaaccac
     2161 aagcccatcg actacaacag gtttgtggtg cacggcctaa ccactggcga gcagtacatc
     2221 ttccgagtta aagccgttaa tgctgttggg acgagtgaga attctcagga gtctgacgtc
     2281 atcaaagtcc aggccgccct caccgtcccg tcccatcctt acgggatcac ccttctgaac
     2341 tgtgacggcc actccatgac cctgggctgg aagaggccta agtacagcgg tggctcaccc
     2401 atcctcggtt actacataga caagagagag gctcaccaca agaactggca tgaggtcaac
     2461 gcctcgcctc tccaagagag gatcctgacg gtggagggct tggcagaagg ctcactctac
     2521 gagttcagaa ttgccgccac caacctcgtg gggatcgggc agccgtcgga ccccagcgag
     2581 ctcttcaagt gcgaggcctg gacggcgccg gaaccgggtc ctgcctacga cctgacgttc
     2641 tgtgaggtcc gggacacatc cctggtgctt ctctggaagg ccccggtgta ttctggcagc
     2701 agccccatct ctgggtattt cgtggacctt aacgaagagg attccgaaga gtggatcacc
     2761 gtcaacgagg ccaccacggc acatcgctac ctaaaggtct gccacctgca ccaaggaaaa
     2821 acctacatct tccgtgtccg ggcagtaaat gcgagtgggg tggggaagcc ctcagacacg
     2881 tcggagccgg tacttgtgga ggccaggcca ggcaccaagg agatcagcgc gggcgtggat
     2941 gaaaaaggtg acatctacct gagctttgac tgccaggaga tgacggacgc ctctcacttc
     3001 acgtggtgca aatcctacga ggacattgca ggtgacgaga ggttcaaggt cgagaccgtg
     3061 ggggaccact cgaagctgta ctttaagaat ctggataaag tggacttagg gacttactct
     3121 gtgtccgtca gtgacacgga tggtgtgtcc tccagctttg tcttggatga gaaagagctg
     3181 gaacgtttgg tgacgctgag caatgagata aaaaatccca cgattcctct gaagtcagaa
     3241 ttagcttatg agatttttga taagggccag gtccgcttct ggctgcaggc tgagcactta
     3301 tcaccagacg ccagctaccg ctttatcatt aatgacagag aagtcagtga cagcgagaca
     3361 cacagaatca agtgtgacaa gtcaactggc ctcatcgaga tggtgatgga tcagttttcc
     3421 tttgaaaacg aaggcaccta cactgtgcag attcatgacg gaaaagcaaa aagtcagtct
     3481 tctctggttc tcatcggaga cgcattcaag gctgtcctag aagaggctga atttcaaaga
     3541 aaggaatttc tcaggaaaca aggccctcat ttcgctgagt atctgcactg ggatgttaca
     3601 gaagattgtg aagtccggct ggtctgtaag gttgcgaaca ccaagaagga aaccgttttc
     3661 aaatggctaa aggatgatgc tctgtatgaa atggaaaagt tgcctgatct ggagaagggg
     3721 gtctgtgagc tgttactacc aaagttgtca aagaaggacc atggtgaata taaggcaacc
     3781 ttgaaagacg agagaggtca agatgtgtct gtccttgaga tagctggcaa agtgtacgag
     3841 gatatgattt tggccatgag tagagtctgt ggagcctctg cttctccact gaagatactc
     3901 tgcaccgcag aagaaataag acttcagtgt ttcatgaaat atttcaccga agaaatgaaa
     3961 gtgaactggt accacaagga tgctaagatt gcatcaggtg agcacatgag agttggtggg
     4021 agtgaggaga tggcctggct gaagatctgc gagcccaccg agaaggataa agggaaatac
     4081 accttcgaga tttttgacgg ccaagatacc catcaacggt cacttgacct gtccggtcaa
     4141 gcttttgatg aagcgtttgc cgaattccag cagctcaagg cagctgcttt tgcagagaaa
     4201 aatcgcggca aggtgctcgg cggcttaccc gacgtggtga ccataatgga gggaaagacc
     4261 ttgaacctga cctgcacggt gttcgggaac ccggacccgg acgtgatgtg gttcaagaac
     4321 gacagggaca tcgagctgag cgaccacttc ttggtcaagg tggagcaggc caagtatgtc
     4381 agcatgacca tcaagggcgt gacctccgag gactcgggca agtacagcat ccatgtcaag
     4441 aacaagtacg ggggcgagaa gatcgacgtg acggtcagcg tatacaagca tggggagaag
     4501 atccctgagg tggtgctgcc ccagcaggcc aagcccaagc tcatccccgc gtccgcgtcc
     4561 tcgcccaccc agtgaggggc ggcccaggag acagacggca cgggtgcttg ttcccagcag
     4621 gtgacaaggg cccgcggcgt ccagcgtggc ttgatagtca atcgtgcgtt acggttttag
     4681 tcttcatgtt tggcgattag gggtttctgt ccttctaagc tgaaacgtgg atgttttccg
     4741 ggaggctgca ccactgtgtc tgcaggcgct ggacggggtg ggttggaggt gagctgacgt
     4801 tgtgctgggg tcgtgccctc tagtgccctc aggcctaggg gctctgaaat gctggtggga
     4861 tagcgtgtgt gcctccatac tctcagctct ctcttgcttc aggtgaataa aactt
//
LOCUS       XM_032618619            4870 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus myomesin 2 (MYOM2), transcript variant
            X2, mRNA.
ACCESSION   XM_032618619
VERSION     XM_032618619.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4870
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4870
                     /gene="MYOM2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746862"
     CDS             79..4530
                     /gene="MYOM2"
                     /codon_start=1
                     /product="myomesin-2 isoform X2"
                     /protein_id="XP_032474510.1"
                     /db_xref="GeneID:116746862"
                     /translation="MDSRPERKLVFKILLCGFSWVSTKMSLVAVPFYQKRHKHLDQSY
                     RNIQTRYLVDEYTAKKRASTQTSSQKSVTQESSSQRESSQTAPGGTTCRLCARRVSSA
                     LEEDEQERKHRYQSLVASYGEAKRERFLSELAQLEEDVHLARTHARDKLDRYALQHVD
                     RYALQHTVDDRLAWERHSREERLSRAPEILVQLRSHTIWEQMSVKLCFTVQGFPTPVV
                     QWYKDGSLVCQAGEPGKYRIESKYGVHTLEINRADFDDTATYSAVATNVHGQVSTNAA
                     VVVRRFRGDEEPLHSVGLPITVPLPSVIPHMHFDVQFLEKFGVTFRREGETLALKCTL
                     LVTPDLKRVQPRAEWYRDDVLLKESKWIKMFFGDGQALLSFSHLNKDDEGLYTLRIVS
                     RGGVSDHSAFLFVRDADPLVTGAPGAPMDLQCHDVNRDYVIVTWKPPNTTKESPVIGY
                     FVDRCEVGADSWVQCNDRPVKICKYPVTGLFEGRSYIFRVRAVNNAGISRPSRVSEAV
                     AALDPLDLKPLQAVHWEGDKEIVIYQEDLEGDVQVPGPPTNVHASEISRTYIVLSWDP
                     PAPRGKEPLMYFIEKSVVGSGSWQRENAQTAVRSPRYAVFDLAEGKPYVFRVLSANKH
                     GLSDPSEITAPIQAQDTIVVPSAPGHVVTSRNTRTSVVVQWDQPKHKEDLLGYYVDCC
                     MAGSTVWEPCNHKPIDYNRFVVHGLTTGEQYIFRVKAVNAVGTSENSQESDVIKVQAA
                     LTVPSHPYGITLLNCDGHSMTLGWKRPKYSGGSPILGYYIDKREAHHKNWHEVNASPL
                     QERILTVEGLAEGSLYEFRIAATNLVGIGQPSDPSELFKCEAWTAPEPGPAYDLTFCE
                     VRDTSLVLLWKAPVYSGSSPISGYFVDLNEEDSEEWITVNEATTAHRYLKVCHLHQGK
                     TYIFRVRAVNASGVGKPSDTSEPVLVEARPGTKEISAGVDEKGDIYLSFDCQEMTDAS
                     HFTWCKSYEDIAGDERFKVETVGDHSKLYFKNLDKVDLGTYSVSVSDTDGVSSSFVLD
                     EKAIPLKSELAYEIFDKGQVRFWLQAEHLSPDASYRFIINDREVSDSETHRIKCDKST
                     GLIEMVMDQFSFENEGTYTVQIHDGKAKSQSSLVLIGDAFKAVLEEAEFQRKEFLRKQ
                     GPHFAEYLHWDVTEDCEVRLVCKVANTKKETVFKWLKDDALYEMEKLPDLEKGVCELL
                     LPKLSKKDHGEYKATLKDERGQDVSVLEIAGKVYEDMILAMSRVCGASASPLKILCTA
                     EEIRLQCFMKYFTEEMKVNWYHKDAKIASGEHMRVGGSEEMAWLKICEPTEKDKGKYT
                     FEIFDGQDTHQRSLDLSGQAFDEAFAEFQQLKAAAFAEKNRGKVLGGLPDVVTIMEGK
                     TLNLTCTVFGNPDPDVMWFKNDRDIELSDHFLVKVEQAKYVSMTIKGVTSEDSGKYSI
                     HVKNKYGGEKIDVTVSVYKHGEKIPEVVLPQQAKPKLIPASASSPTQ"
     misc_feature    637..918
                     /gene="MYOM2"
                     /note="Immunoglobulin domain I1 of the titin I-band and
                     similar proteins; a member of the I-set of IgSF domains;
                     Region: IgI_titin_I1-like; cd20951"
                     /db_xref="CDD:409543"
     misc_feature    637..645
                     /gene="MYOM2"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409543"
     misc_feature    649..669
                     /gene="MYOM2"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409543"
     misc_feature    688..711
                     /gene="MYOM2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409543"
     misc_feature    727..744
                     /gene="MYOM2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409543"
     misc_feature    748..759
                     /gene="MYOM2"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409543"
     misc_feature    781..795
                     /gene="MYOM2"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409543"
     misc_feature    808..831
                     /gene="MYOM2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409543"
     misc_feature    850..876
                     /gene="MYOM2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409543"
     misc_feature    883..918
                     /gene="MYOM2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409543"
     misc_feature    1045..1293
                     /gene="MYOM2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1114..1128
                     /gene="MYOM2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1189..1203
                     /gene="MYOM2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1231..1248
                     /gene="MYOM2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1273..1284
                     /gene="MYOM2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1381..2778
                     /gene="MYOM2"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; Region: FN3; COG3401"
                     /db_xref="CDD:442628"
     misc_feature    2959..3162
                     /gene="MYOM2"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    3841..4428
                     /gene="MYOM2"
                     /note="IL-1 receptor-like protein; Provisional; Region:
                     PHA02826"
                     /db_xref="CDD:165173"
     misc_feature    4162..4437
                     /gene="MYOM2"
                     /note="C-terminal immunoglobulin (Ig)-like domain of
                     M-protein; member of the I-set of Ig superfamily (IgSF)
                     domains; Region: IgI_M-protein_C; cd05891"
                     /db_xref="CDD:143299"
     misc_feature    4162..4173
                     /gene="MYOM2"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:143299"
     misc_feature    4186..4203
                     /gene="MYOM2"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:143299"
     misc_feature    4213..4236
                     /gene="MYOM2"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:143299"
     misc_feature    4255..4272
                     /gene="MYOM2"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:143299"
     misc_feature    4279..4287
                     /gene="MYOM2"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:143299"
     misc_feature    4300..4320
                     /gene="MYOM2"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:143299"
     misc_feature    4330..4347
                     /gene="MYOM2"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:143299"
     misc_feature    4375..4398
                     /gene="MYOM2"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:143299"
     misc_feature    4405..4437
                     /gene="MYOM2"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:143299"
ORIGIN      
        1 gctgcttcat tgcctgaaat gtgggattgt ttgagagggc tgagaacatt ctgattgccc
       61 tttggagcag ctgagaacat ggacagtagg ccagaaagga agctggtgtt taaaatcctg
      121 ctctgtggtt tctcttgggt gtccacaaag atgtcgcttg ttgctgtgcc cttctaccaa
      181 aagagacaca aacacttgga ccagtcatac cgtaatattc aaacaaggta ccttgtggat
      241 gagtacacag cgaaaaagcg cgcttccacc cagacgtctt cccagaaatc tgtcactcag
      301 gagtcgtcct cgcagagaga gtccagccag acggcaccgg gggggaccac ctgcaggttg
      361 tgtgccagga gggtgagctc cgcgctggaa gaggacgagc aggaaaggaa gcacaggtac
      421 cagtcactgg tggcttccta tggggaggcc aagcgggagc gtttcctcag cgagctggcc
      481 cagctggagg aggacgtgca cctggcccgc acccatgccc gggacaagct ggacagatac
      541 gccctgcagc acgtggacag atacgccctg cagcacacgg tggacgacag gctggcctgg
      601 gagaggcact cacgtgagga gcggctgagc agagcccctg agatcctggt gcagctccgg
      661 tcacacacca tctgggaaca gatgtctgtc aagctgtgct tcaccgtgca gggcttccca
      721 acccccgtgg tgcagtggta taaagacggc agcttggtct gccaggcagg ggagccggga
      781 aagtacagga ttgagagcaa gtacggggtg cacacgctgg agatcaacag ggcggacttt
      841 gacgatactg cgacctactc ggcggtggcg acaaacgtgc acggacaggt gtccaccaat
      901 gcggcggtgg tggtgagaag attccgaggt gacgaggagc cgttgcattc tgtggggctc
      961 ccgatcacag tgcccttgcc ctccgtgatc ccgcacatgc acttcgacgt ccagtttctg
     1021 gagaaattcg gcgtcacctt ccggagggaa ggcgagacgc tggctctcaa gtgcacgctg
     1081 ctggtgacgc cggacctgaa gcgggtgcag ccgcgggccg agtggtaccg ggacgacgtg
     1141 ctgctgaagg agtccaagtg gataaagatg ttctttgggg acggccaggc cttgctgtcc
     1201 ttcagccacc tcaacaagga cgacgagggt ctctacactc tgaggatcgt gtccagggga
     1261 ggggtcagcg accacagcgc tttcctgttt gtccgagacg ctgaccccct ggtcacgggg
     1321 gcccctggcg cgcccatgga cctgcagtgc cacgatgtaa accgggatta tgtcatcgta
     1381 acttggaagc cacccaacac gaccaaggag agcccggtca tcggctattt tgttgatcga
     1441 tgtgaagtgg gagctgacag ttgggttcag tgcaatgacc gccccgtgaa gatctgtaaa
     1501 taccccgtaa ccggactttt tgaaggaagg tcctacatct tccgcgtgcg ggctgtcaac
     1561 aatgcaggga tcagccggcc ttccagagtc tctgaggctg tggctgccct cgaccccctt
     1621 gacctcaaac cgttacaagc agtccactgg gagggagata aagaaatcgt aatctatcag
     1681 gaggaccttg aaggtgatgt tcaggttcca ggacctccca ccaacgtcca cgcctcagaa
     1741 atcagcagga catacatcgt cctcagctgg gacccacctg ccccccgtgg caaggagccg
     1801 ctgatgtatt tcattgagaa gtccgtggtc gggagcggaa gctggcagcg ggagaacgca
     1861 cagacggccg tgaggtcccc ccgatacgct gtcttcgatc ttgccgaggg gaaaccatac
     1921 gtgttccgag tgttgtcagc aaataagcat ggcctgagtg acccgtcgga aatcaccgcc
     1981 cccattcagg cccaggacac catcgtggtc ccctcagccc ccggccacgt cgttacctcc
     2041 cggaacacaa ggacgtcagt ggtggtgcag tgggaccagc cgaagcacaa ggaggacctg
     2101 ctcggctact acgtggactg ctgcatggcc gggtccactg tctgggagcc ctgtaaccac
     2161 aagcccatcg actacaacag gtttgtggtg cacggcctaa ccactggcga gcagtacatc
     2221 ttccgagtta aagccgttaa tgctgttggg acgagtgaga attctcagga gtctgacgtc
     2281 atcaaagtcc aggccgccct caccgtcccg tcccatcctt acgggatcac ccttctgaac
     2341 tgtgacggcc actccatgac cctgggctgg aagaggccta agtacagcgg tggctcaccc
     2401 atcctcggtt actacataga caagagagag gctcaccaca agaactggca tgaggtcaac
     2461 gcctcgcctc tccaagagag gatcctgacg gtggagggct tggcagaagg ctcactctac
     2521 gagttcagaa ttgccgccac caacctcgtg gggatcgggc agccgtcgga ccccagcgag
     2581 ctcttcaagt gcgaggcctg gacggcgccg gaaccgggtc ctgcctacga cctgacgttc
     2641 tgtgaggtcc gggacacatc cctggtgctt ctctggaagg ccccggtgta ttctggcagc
     2701 agccccatct ctgggtattt cgtggacctt aacgaagagg attccgaaga gtggatcacc
     2761 gtcaacgagg ccaccacggc acatcgctac ctaaaggtct gccacctgca ccaaggaaaa
     2821 acctacatct tccgtgtccg ggcagtaaat gcgagtgggg tggggaagcc ctcagacacg
     2881 tcggagccgg tacttgtgga ggccaggcca ggcaccaagg agatcagcgc gggcgtggat
     2941 gaaaaaggtg acatctacct gagctttgac tgccaggaga tgacggacgc ctctcacttc
     3001 acgtggtgca aatcctacga ggacattgca ggtgacgaga ggttcaaggt cgagaccgtg
     3061 ggggaccact cgaagctgta ctttaagaat ctggataaag tggacttagg gacttactct
     3121 gtgtccgtca gtgacacgga tggtgtgtcc tccagctttg tcttggatga gaaagcgatt
     3181 cctctgaagt cagaattagc ttatgagatt tttgataagg gccaggtccg cttctggctg
     3241 caggctgagc acttatcacc agacgccagc taccgcttta tcattaatga cagagaagtc
     3301 agtgacagcg agacacacag aatcaagtgt gacaagtcaa ctggcctcat cgagatggtg
     3361 atggatcagt tttcctttga aaacgaaggc acctacactg tgcagattca tgacggaaaa
     3421 gcaaaaagtc agtcttctct ggttctcatc ggagacgcat tcaaggctgt cctagaagag
     3481 gctgaatttc aaagaaagga atttctcagg aaacaaggcc ctcatttcgc tgagtatctg
     3541 cactgggatg ttacagaaga ttgtgaagtc cggctggtct gtaaggttgc gaacaccaag
     3601 aaggaaaccg ttttcaaatg gctaaaggat gatgctctgt atgaaatgga aaagttgcct
     3661 gatctggaga agggggtctg tgagctgtta ctaccaaagt tgtcaaagaa ggaccatggt
     3721 gaatataagg caaccttgaa agacgagaga ggtcaagatg tgtctgtcct tgagatagct
     3781 ggcaaagtgt acgaggatat gattttggcc atgagtagag tctgtggagc ctctgcttct
     3841 ccactgaaga tactctgcac cgcagaagaa ataagacttc agtgtttcat gaaatatttc
     3901 accgaagaaa tgaaagtgaa ctggtaccac aaggatgcta agattgcatc aggtgagcac
     3961 atgagagttg gtgggagtga ggagatggcc tggctgaaga tctgcgagcc caccgagaag
     4021 gataaaggga aatacacctt cgagattttt gacggccaag atacccatca acggtcactt
     4081 gacctgtccg gtcaagcttt tgatgaagcg tttgccgaat tccagcagct caaggcagct
     4141 gcttttgcag agaaaaatcg cggcaaggtg ctcggcggct tacccgacgt ggtgaccata
     4201 atggagggaa agaccttgaa cctgacctgc acggtgttcg ggaacccgga cccggacgtg
     4261 atgtggttca agaacgacag ggacatcgag ctgagcgacc acttcttggt caaggtggag
     4321 caggccaagt atgtcagcat gaccatcaag ggcgtgacct ccgaggactc gggcaagtac
     4381 agcatccatg tcaagaacaa gtacgggggc gagaagatcg acgtgacggt cagcgtatac
     4441 aagcatgggg agaagatccc tgaggtggtg ctgccccagc aggccaagcc caagctcatc
     4501 cccgcgtccg cgtcctcgcc cacccagtga ggggcggccc aggagacaga cggcacgggt
     4561 gcttgttccc agcaggtgac aagggcccgc ggcgtccagc gtggcttgat agtcaatcgt
     4621 gcgttacggt tttagtcttc atgtttggcg attaggggtt tctgtccttc taagctgaaa
     4681 cgtggatgtt ttccgggagg ctgcaccact gtgtctgcag gcgctggacg gggtgggttg
     4741 gaggtgagct gacgttgtgc tggggtcgtg ccctctagtg ccctcaggcc taggggctct
     4801 gaaatgctgg tgggatagcg tgtgtgcctc catactctca gctctctctt gcttcaggtg
     4861 aataaaactt
//
LOCUS       XM_032618620             841 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus helt bHLH transcription factor (HELT),
            transcript variant X1, mRNA.
ACCESSION   XM_032618620
VERSION     XM_032618620.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..841
                     /gene="HELT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins"
                     /db_xref="GeneID:116746863"
     CDS             82..810
                     /gene="HELT"
                     /codon_start=1
                     /product="hairy and enhancer of split-related protein HELT
                     isoform X1"
                     /protein_id="XP_032474511.1"
                     /db_xref="GeneID:116746863"
                     /translation="MSGKLKERKRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQ
                     SSGKLEKAEILEMTVQYLRALHSADFPRGREKAELLAEFANYFHYGYHECMKNLVHYL
                     TTVERMETKDTKYARILAFLQSKARLGAEPAFQPLGSLPEPDFSYQLHPAGPEFAGHS
                     PGEASVFPQGAAPGSFPWPHGAARSPALPYLPSAPVPLPSPAQQHSPFLTPVQGLDRH
                     YLNLIGHAHPNALNLHTPQHPAVL"
     misc_feature    121..288
                     /gene="HELT"
                     /note="basic helix-loop-helix-orange (bHLH-O) domain found
                     in hairy and enhancer of split-related protein HELT and
                     similar proteins; Region: bHLH-O_HELT; cd11408"
                     /db_xref="CDD:381414"
     misc_feature    order(124..132,139..141,145..150,160..162,229..234)
                     /gene="HELT"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381414"
     misc_feature    order(145..150,154..162,166..171,175..180,187..192,
                     199..201,223..225,229..237,244..249,253..258,262..270,
                     274..279,286..288)
                     /gene="HELT"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381414"
     misc_feature    337..462
                     /gene="HELT"
                     /note="Hairy Orange; Region: Hairy_orange; pfam07527"
                     /db_xref="CDD:462193"
ORIGIN      
        1 gacactcgag gaggcacacg aggcgaaaag tggacgggtg cctcgcgcca ccgcctctcc
       61 cgagggcgcg tactgaccag aatgtcagga aagctcaagg aacgcaaaag aacccccgtt
      121 tcccacaaag tgatagaaaa gcggaggaga gaccggatta accgctgttt gaacgagctg
      181 ggcaagacgg tgcccatggc cctggcgaag cagagttccg ggaagctgga gaaggcggag
      241 atcctcgaga tgaccgttca gtacctgaga gccctgcact ccgctgattt tccccgggga
      301 agggaaaaag cagaactgct agcggagttt gccaactact tccactacgg ctaccacgag
      361 tgcatgaaga acctggtgca ttacctcacc accgtcgaga ggatggagac caaggacacc
      421 aagtacgcgc gcatcctcgc cttcttgcag tccaaggccc gcttgggcgc cgagcccgcc
      481 ttccagccgc tgggttcgct cccggagccg gatttctctt atcagctgca cccagcgggg
      541 cccgagttcg caggccatag ccctggtgag gcgtccgtgt tcccgcaggg cgcggcccca
      601 gggtccttcc cctggccaca cggcgcggcc cgcagcccgg cgctgcccta cctgcccagt
      661 gcgcccgtgc ctcttccgag ccctgcgcag cagcacagcc ccttcctgac gcccgtgcag
      721 ggcctggacc ggcattacct caacctgatc ggccacgccc accccaacgc ccttaacctg
      781 cacacgcccc agcaccccgc ggtgctctga cgccgactcg cccacagatt tctttgcgct
      841 t
//
LOCUS       XM_032618621             838 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus helt bHLH transcription factor (HELT),
            transcript variant X2, mRNA.
ACCESSION   XM_032618621
VERSION     XM_032618621.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..838
                     /gene="HELT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 Proteins"
                     /db_xref="GeneID:116746863"
     CDS             82..807
                     /gene="HELT"
                     /codon_start=1
                     /product="hairy and enhancer of split-related protein HELT
                     isoform X2"
                     /protein_id="XP_032474512.1"
                     /db_xref="GeneID:116746863"
                     /translation="MSGKLKERKRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQ
                     SSGKLEKAEILEMTVQYLRALHSADFPRGREKELLAEFANYFHYGYHECMKNLVHYLT
                     TVERMETKDTKYARILAFLQSKARLGAEPAFQPLGSLPEPDFSYQLHPAGPEFAGHSP
                     GEASVFPQGAAPGSFPWPHGAARSPALPYLPSAPVPLPSPAQQHSPFLTPVQGLDRHY
                     LNLIGHAHPNALNLHTPQHPAVL"
     misc_feature    121..288
                     /gene="HELT"
                     /note="basic helix-loop-helix-orange (bHLH-O) domain found
                     in hairy and enhancer of split-related protein HELT and
                     similar proteins; Region: bHLH-O_HELT; cd11408"
                     /db_xref="CDD:381414"
     misc_feature    order(124..132,139..141,145..150,160..162,229..234)
                     /gene="HELT"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381414"
     misc_feature    order(145..150,154..162,166..171,175..180,187..192,
                     199..201,223..225,229..237,244..249,253..258,262..270,
                     274..279,286..288)
                     /gene="HELT"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381414"
     misc_feature    334..459
                     /gene="HELT"
                     /note="Hairy Orange; Region: Hairy_orange; pfam07527"
                     /db_xref="CDD:462193"
ORIGIN      
        1 gacactcgag gaggcacacg aggcgaaaag tggacgggtg cctcgcgcca ccgcctctcc
       61 cgagggcgcg tactgaccag aatgtcagga aagctcaagg aacgcaaaag aacccccgtt
      121 tcccacaaag tgatagaaaa gcggaggaga gaccggatta accgctgttt gaacgagctg
      181 ggcaagacgg tgcccatggc cctggcgaag cagagttccg ggaagctgga gaaggcggag
      241 atcctcgaga tgaccgttca gtacctgaga gccctgcact ccgctgattt tccccgggga
      301 agggaaaaag aactgctagc ggagtttgcc aactacttcc actacggcta ccacgagtgc
      361 atgaagaacc tggtgcatta cctcaccacc gtcgagagga tggagaccaa ggacaccaag
      421 tacgcgcgca tcctcgcctt cttgcagtcc aaggcccgct tgggcgccga gcccgccttc
      481 cagccgctgg gttcgctccc ggagccggat ttctcttatc agctgcaccc agcggggccc
      541 gagttcgcag gccatagccc tggtgaggcg tccgtgttcc cgcagggcgc ggccccaggg
      601 tccttcccct ggccacacgg cgcggcccgc agcccggcgc tgccctacct gcccagtgcg
      661 cccgtgcctc ttccgagccc tgcgcagcag cacagcccct tcctgacgcc cgtgcagggc
      721 ctggaccggc attacctcaa cctgatcggc cacgcccacc ccaacgccct taacctgcac
      781 acgccccagc accccgcggt gctctgacgc cgactcgccc acagatttct ttgcgctt
//
LOCUS       XM_032618622           10704 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CUB and Sushi multiple domains 1 (CSMD1),
            mRNA.
ACCESSION   XM_032618622
VERSION     XM_032618622.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10704
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10704
                     /gene="CSMD1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins, and 31% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746864"
     CDS             10..10704
                     /gene="CSMD1"
                     /codon_start=1
                     /product="CUB and sushi domain-containing protein 1"
                     /protein_id="XP_032474513.1"
                     /db_xref="GeneID:116746864"
                     /translation="MTAWRKSKSLLAPLALLALCAGLLNAAKGQNCGGLVQGPNGTIE
                     SPGFPHGYPNYANCTWIIITGERNRIQLSFHTFALEEDFDILSVYDGQLQQGNLKVRL
                     SGFQLPSCIVSTGSILTLWFTTDFAVSAQGFKALYEVLPSHTCGNPGEILKGVLHGTR
                     FNIGDKIRYSCLSGYILEGHAILTCIVSPGNGASWDFPAPFCRAEGACGGTLRGTSGS
                     ISSPYFPSEYENNADCTWTILAEPGDTIALVFTDFQLEEGYDFLEISGTEAPSIWLTG
                     MNLPSPVISSKNWLRLHFTSDSNHRRKGFNAQFQVKKAIELKSRGVKMLPSKDSSHKN
                     SVLTQGGVALVSDMCPDPGIPENGRRTGSDFRVGANVQFSCEDNYVLQGSKSITCQRV
                     TETLAAWSDHRPICRARTCGSNLRGPSGVITSPNYPVQYEDNAHCVWVITTTDPDKVI
                     KLAFEEFELERGYDTLTVGDAGKVGDTRTVLYVLTGSSVPDLIVSMSNQMWLHLQSDD
                     SIASPGFKAVYQEIEKGGCGDPGIPAYGKRTGSSFLHGDSLTFECQAAFELVGERVIT
                     CQQNNQWSGNKPSCVFSCFFNFTASSGIILSPNYPEEYGNNMNCVWLIISEPGSRIHL
                     IFNDFDVEPQFDFLAVKDDGISDITVLGTFSGNEVPSQLASSGHVVRLEFQSDHSTTG
                     RGFNITYTTFGQNECHDPGIPINGRRFGDRFLLGSSVSFHCDDGFVKTQGSESITCIL
                     QDGNVVWSSTVPRCEAPCGGHLTASSGVILPPGWPGYYKDSLNCEWIIEAKPGHSIKI
                     TFDRFQTEVNYDTLEVRDGPASSSPLIGEYHGTQAPQFLISTGNFMYLLFTTDNSRSS
                     VGFLIRYESVTLESDSCLDPGIPVNGHRHGSHFGIQSTVTFSCNPGYTLSDDEPLVCE
                     RNHQWSHALPSCDALCGGYIHGKSGTVLSPGFPDFYPNSLNCTWTIEVSHGKGVQMIF
                     HTFHLESSHDYLLITEDGSFSEPVARLTGSVLPHTIKAGLFGNFTAQLRFISDFSISY
                     EGFNITFSEYDLEPCDDPGVPAFSRRIGFHFGVGDSLTFSCFPGYRLEGATKLTCLGG
                     GRRVWSASLPRCVAECGASVKGNEGTLLSPNFPSNYDNNHECIYKIETEAGKGIHLRA
                     RSFQLFEGDILKVYDGRDSSSRPLGAFTKNELTGLILNSTSNHLWLEFNSNGSDTDQG
                     FQLTYTSFDLVKCEDPGIPNYGYRIRDEGHFTDTVVLYSCNPGYAMHGGNTLTCLSGD
                     RRVWDRPLPSCVAECGGQIHAATSGRILSPGYPAPYDNNLHCTWVVEADPGKTISLHF
                     IVFDTELAHDILKVWDGPVDSAILLKEWSGSALPEDIHSTFNSLTLQFDSDFFISKSG
                     FSIQFSTSIASTCNDPGIPQNGTRYGDSREPGDTITFQCDPGYQLQGQAKITCVQLNN
                     RFFWQPDPPTCIAACGGNLTGPAGVILSPNYPQPYPPGKECDWRIKVNPDFVIALIFK
                     SFNMEPSYDFLHIYEGEDSNSPLIGSFQGSQAPERIESGGNSLFLAFRSDASVGLSGF
                     AIEFKEKPREACFDPGNIMNGTRIGTDFKLGSTVTYQCDSGYKIADPSSITCVIGADG
                     KPAWNRVLPSCNAPCGGQYTGSEGVVLSPNYPHNYTAGQICLYSITVPKEFVVFGQFA
                     YFQTALNDLTELFDGTHPQARLLSSLSGSHSGETLPLATSNQILLRFSAKSGAPARGF
                     HFVYQAVPRTSDTQCSSVPEPRYGRRIGLEFSAGSIVRFECNPGYLLQGSMAIRCQSV
                     PNALAQWNDTIPSCVVPCSGNFTQRRGTILSPGYPEPYGNNLNCIWKIIVTEGSGIQI
                     QVISFATEQNWDSLEIYDGGDVAAPRLGSFSGTTVPALLNSTSNQLYLHFQSDISVAA
                     AGFHLEYKTVGLAACQEPALPSNSIKTGDRYMVNDVLSFQCEPGYTLQGRSHISCMPG
                     TVRRWNYPSPLCIATCGGTLSSMGGVILSPGFPGTYPSNLDCTWKIALPTGYGAHIQF
                     LNFSTEANHDYLEIQNGPFHTSPMMGQFSGPDLPAPLLSTTHETLIHFYSDHSQNRQG
                     FKLTYQAYGLQNCPDPPPFQNGYMINSDYSVGQSVSFECYPGYILIGHRVLTCQHGIN
                     RNWNYPFPRCDAPCGYNVTSQNGTIYSPGFPDEYPILKDCVWLIMVPPGHGVYINFTL
                     LQTEAVNDYIAVWDGPDQNSPQLGVFSGNTALETAYSSTNQVLLKFHSDFSNGGFFVL
                     NFHAFQLKKCQPPPAVPQAEMLTEDEDFEIGDSVKYQCHPGYTLSGTDTLTCMLGSQL
                     QFEGSLPTCEAQCPASEVRTESSGVILSPGYPGNYFNSQTCSWSIRVEPNYNITIFVD
                     IFQSEKQFDALEVFDGSSGQSPLLVVLSGNHTEQSNFTSRSNQLYLRWSTDHATSKKG
                     FKIRYSAPYCSLTHTLKNGGVLNRTAGEVGSKVHYFCKPGYRMIGHSNATCRRNPVGM
                     YQWDSLAPLCQAVSCGIPESPGNGSFTGNEFTLDSKVTYECNEGFKLDAGQQATAVCQ
                     EDGLWSNRGKPPTCKAVTCPGIEAQLSEHVTWRLVSGSLNEYGAQVVLSCSPGYYLEG
                     QRLVQCHANGSWSIGVERPRCRVISCGSLSFPPNGNKIGTMTVYGATAIFTCNTGYTL
                     VGSHVRECLANGLWSGPETRCLAGHCGSPDPIVNGHISGDGFSYRDTVVYQCNPGFRL
                     VGTSVRICLQDHKWSGHTPVCVPITCGHPGNPAHGFTNGSEFNLNDVVNFTCNTGYLL
                     QGASRAQCRSNGQWSSPLPTCRVVNCSDPGFVENAVRHEQQNFPESFEYGTSVVYHCK
                     KGFYLLGSSALTCMANGLWDRSLPKCLVISCGHPGVPANAILTGDLFTSGAVVHYSCQ
                     GRRSLVGNSSRTCQEDSHWSGALPHCTGNNPGFCGDPGTPAHGSRLGDEFKAKSLLRF
                     SCEMGYQLRGSAERTCLLNGSWSGLQPVCEAVSCGNPGTPTHGMIVSSDGVLFSSSVV
                     YACWDGYRTSGLTTRHCTANGTWTGTAPDCTLISCGDPGTPANGLQFGTDFTFNSTVS
                     YQCNPGYTMEPATSSTIRCTKDSAWDHSKPTCRAVMCGQPPPVQDGKVEGSDLRWGAS
                     VSYSCAQGFQLSHPAILSCEGRGVWKGEVPQCLPVFCGDPGTPAEGRLSGKSFTYRSE
                     VFFQCRSPFILVGSSRRVCQADGTWSGTQPTCIDPAHNTCPDPGTPQFGIQNSSRGYE
                     VGSMVFFRCRKGYHVQGSTTRTCLANLTWSGIQTECIPHACRQPETPAHADVRAIDLP
                     TFGYTLVYTCHPGFFLAGGSEHRTCKADMKWTGKSPVCKSKGVREVNETVTKTPVPSD
                     VFFIHSVWKGYYEYLGKRQPATLTVDWFNATSSKVNATFVEAAQGELKLAGVYKKEEA
                     HLLLKAFQIKGPVDIFVSNFENDNWGLDGYVSSGLERGGFTFQGDIHGKDFGKFKLER
                     QGARSSAPDPARPQRGASSGSVAAAILAPLSALVLSGLAFHLHKHRARPKVQYNGYAG
                     HESSNGQASFENPMYDTNLKPTEAKAVRFDTTLNTVCTVV"
     misc_feature    103..426
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(127..129,133..135,139..141,220..222,235..237,
                     337..339,409..411,415..417,421..426)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    442..615
                     /gene="CSMD1"
                     /note="Domain abundant in complement control proteins;
                     SUSHI repeat; short complement-like repeat (SCR); Region:
                     CCP; smart00032"
                     /db_xref="CDD:214478"
     misc_feature    order(472..474,523..525)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    631..942
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(655..657,661..663,667..669,748..750,763..765,
                     853..855,925..927,931..933,937..942)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1054..1230
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(1084..1086,1135..1137)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    1240..1566
                     /gene="CSMD1"
                     /note="CUB domain; Region: CUB; pfam00431"
                     /db_xref="CDD:395345"
     misc_feature    order(1264..1266,1270..1272,1276..1278,1360..1362,
                     1375..1377,1483..1485,1555..1557,1561..1563,1567..1569)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1588..1752
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(1618..1620,1669..1671)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    1759..2082
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(1783..1785,1789..1791,1795..1797,1876..1878,
                     1891..1893,1993..1995,2065..2067,2071..2073,2077..2082)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    2098..2274
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(2128..2130,2179..2181)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    2281..2604
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(2305..2307,2311..2313,2317..2319,2398..2400,
                     2413..2415,2515..2517,2587..2589,2593..2595,2599..2604)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    2626..2787
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(2656..2658,2707..2709)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    2797..3123
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(2821..2823,2827..2829,2833..2835,2914..2916,
                     2929..2931,3028..3030,3109..3111,3115..3117,3121..3123)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    3142..3312
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(3172..3174,3223..3225)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    3319..3642
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(3343..3345,3349..3351,3355..3357,3436..3438,
                     3451..3453,3550..3552,3625..3627,3631..3633,3637..3642)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    3658..3831
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(3688..3690,3742..3744)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    3838..4164
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(3865..3867,3871..3873,3877..3879,3958..3960,
                     3973..3975,4075..4077,4147..4149,4153..4155,4159..4164)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    4180..4353
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(4210..4212,4261..4263)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    4360..4677
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    4699..4872
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(4729..4731,4780..4782)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    4882..5205
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(4906..4908,4912..4914,4918..4920,4999..5001,
                     5014..5016,5113..5115,5188..5190,5194..5196,5200..5205)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    5230..5406
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(5260..5262,5311..5313)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    5413..5730
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(5437..5439,5443..5445,5449..5451,5530..5532,
                     5545..5547,5647..5649,5719..5721,5725..5727)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    5752..5922
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(5782..5784,5833..5835)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    5929..6252
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(5959..5961,5965..5967,6046..6048,6061..6063,
                     6163..6165,6235..6237,6241..6243,6247..6252)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    6268..6435
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(6298..6300,6349..6351)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    6445..6765
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(6469..6471,6475..6477,6481..6483,6562..6564,
                     6577..6579,6679..6681,6748..6750,6754..6756,6760..6765)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    6781..6957
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(6811..6813,6868..6870)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     misc_feature    6973..7296
                     /gene="CSMD1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(6994..6996,7000..7002,7006..7008,7087..7089,
                     7102..7104,7204..7206,7279..7281,7285..7287,7291..7296)
                     /gene="CSMD1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    <7327..7860
                     /gene="CSMD1"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    7864..8574
                     /gene="CSMD1"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    8395..>8928
                     /gene="CSMD1"
                     /note="EEV host range protein; Provisional; Region:
                     PHA02639"
                     /db_xref="CDD:165022"
     misc_feature    8941..9105
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    9103..9822
                     /gene="CSMD1"
                     /note="secreted complement-binding protein; Provisional;
                     Region: PHA02927"
                     /db_xref="CDD:222943"
     misc_feature    9832..10002
                     /gene="CSMD1"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     Region: CCP; cd00033"
                     /db_xref="CDD:153056"
     misc_feature    order(9862..9864,9916..9918)
                     /gene="CSMD1"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
ORIGIN      
        1 tctgcagaca tgactgcgtg gaggaaatcc aagtcgttgc tggcgccgct ggcgctgctg
       61 gcgctgtgcg cggggctcct caacgcagcc aagggtcaga actgtggagg cttagtccag
      121 ggtcccaatg gcaccattga gagtccaggg tttccccatg gttacccaaa ctatgctaac
      181 tgcacctgga ttatcatcac gggagaacgc aatcggatac aattgtcatt ccacaccttt
      241 gctcttgaag aagattttga tattttatcg gtgtatgatg gacagctcca acaagggaat
      301 ttgaaagtga ggttgtcggg atttcagctt ccttcctgca tcgtcagcac cggctccatc
      361 cttactctgt ggttcacgac ggacttcgcc gtgagtgccc agggcttcaa agctctgtat
      421 gaagttttac ccagccacac atgtggaaat cctggagaaa tactgaaagg agttctccac
      481 ggaacaagat tcaacatagg agacaagatc cggtatagct gtctctctgg ctacatcttg
      541 gaaggtcacg ccattctgac ttgcatcgtc agccctggga atggagcatc gtgggacttc
      601 ccagccccgt tttgcagagc tgagggggcc tgtggaggga ccttacgggg gacgagcggc
      661 agcatctcca gcccctactt cccttcagag tacgagaaca acgccgactg tacgtggacc
      721 atcctcgcag aacccgggga caccattgcc ttagtcttca ctgactttca gctcgaagaa
      781 ggatatgact tcttagagat cagcgggaca gaagcgccct ccatatggct gacgggcatg
      841 aacctccctt ctcctgttat cagtagcaag aattggttac gactccattt cacatcggac
      901 agtaaccatc gacggaaagg atttaatgct cagtttcaag tgaaaaaggc gattgaattg
      961 aagtcaagag gagtcaagat gcttcccagc aaggacagta gccataaaaa ctctgtctta
     1021 actcaaggag gtgttgcttt ggtctctgac atgtgtccag atcctgggat tccagaaaac
     1081 ggcagaagaa cgggttcgga cttcagggtt ggtgcaaatg tacagttctc ctgtgaggac
     1141 aattacgtgc tccagggatc caagagcata acgtgtcaga gagtcacgga gactctggct
     1201 gcgtggagtg accaccggcc catttgccga gctagaacgt gtggatcaaa tctgcgtggg
     1261 cccagtggtg tcattacctc ccctaattac ccagttcagt acgaagacaa tgcacactgt
     1321 gtgtgggtca tcaccacaac agatccagac aaggtcatca agcttgcctt tgaggagttt
     1381 gagctggaaa gaggctacga cactctaacc gtgggcgatg ctgggaaagt gggtgatacc
     1441 agaaccgtct tgtatgtact cactggatcc agtgttcctg accttattgt gagtatgagc
     1501 aaccagatgt ggctacatct acagtctgat gacagcattg cctcgcctgg atttaaagct
     1561 gtttaccaag aaattgagaa gggaggatgt ggggacccag gtatccctgc ctatgggaag
     1621 cggacaggca gcagttttct ccacggagac tcgctcacct tcgaatgcca ggcagccttc
     1681 gagctggtgg gggagagagt tatcacgtgt cagcagaaca accagtggtc tggcaacaag
     1741 cccagctgtg tattttcctg tttcttcaac tttacggcat catcaggaat tatcctctca
     1801 ccaaattatc cagaggagta tggtaacaac atgaactgcg tctggttgat catctctgag
     1861 cctggcagca gaattcacct catctttaat gacttcgatg tggagcctca gtttgacttc
     1921 cttgcagtca aagatgacgg gatttcggat ataaccgtgc tgggtacttt ctctggcaat
     1981 gaggtgccct cccagctggc cagcagtggg cacgtcgttc gcctagagtt ccagtcggat
     2041 cactctacca ccggcagagg cttcaacatc acctacacca catttggtca aaacgagtgc
     2101 cacgatccgg gcattcccat aaatggacgg cgttttggtg acaggttcct gcttgggagt
     2161 tcggtctctt tccactgtga tgatggcttt gtcaaaaccc aggggtcgga gtccatcacc
     2221 tgcatcctgc aggatgggaa tgtagtctgg agctccaccg tcccccgctg tgaagccccg
     2281 tgtggtggac atctgacagc ttcaagtgga gtcattttgc ccccagggtg gccagggtat
     2341 tacaaagatt ccttaaattg tgaatggata attgaagcaa aaccaggaca ctctatcaaa
     2401 ataacttttg atagattcca gacagaagtt aattatgaca ccctggaggt cagagatggg
     2461 ccagccagct cgtccccgct gatcggggag taccacggca cacaggcgcc tcagttcctc
     2521 atcagcacag ggaatttcat gtacctcctc ttcaccacag acaatagccg gtccagcgtg
     2581 ggcttcctca tccgctacga gagtgtgact ctggagtcgg actcttgcct tgacccgggg
     2641 atccctgtga atgggcatcg gcacggcagt cactttggca tccagtccac agtgaccttc
     2701 agctgcaatc caggctatac actgagtgac gacgagcccc tggtctgtga gcggaaccac
     2761 cagtggagcc atgcattgcc cagctgtgac gccctctgtg gaggatacat ccatggaaag
     2821 agtggaacag ttctttctcc tgggtttcca gatttttacc caaactctct aaactgtaca
     2881 tggaccattg aggtgtctca tggaaagggg gttcagatga tcttccacac cttccacctg
     2941 gagagctccc acgactactt actcatcaca gaggacggga gtttctcgga gccagtggcc
     3001 aggctcacag ggtcggtgct gccccacacc attaaggcag gtttgtttgg aaacttcacc
     3061 gcccagcttc ggtttatatc agacttttcg atttcctacg agggcttcaa tatcacattt
     3121 tcagaatatg acctcgagcc ttgtgacgat cctggcgtcc ctgccttcag caggagaatc
     3181 ggttttcact tcggagttgg agactctctg acgttttcgt gcttcccagg ttatcgctta
     3241 gaaggcgcaa ccaagctcac gtgcctgggc gggggtcgtc gtgtatggag cgcatctctg
     3301 ccaaggtgtg tggctgaatg tggagcaagt gtcaaaggaa atgaaggaac attactgtct
     3361 ccaaatttcc catcaaatta tgataataac catgagtgta tctataaaat tgaaacagaa
     3421 gctggcaagg ggatccatct cagagcacga agcttccagc tgtttgaagg agatattcta
     3481 aaggtctacg atggaagaga tagttcatca cgtccgctgg gggccttcac taaaaatgag
     3541 ctgacggggc tcatcctgaa cagcacctcc aaccacctgt ggctggagtt caactccaat
     3601 gggtctgaca ctgaccaggg ttttcagctc acctatacta gttttgacct agtgaaatgt
     3661 gaggatccgg ggatccctaa ctatggctac aggatccggg atgaaggcca cttcacggac
     3721 acagtggttc tgtacagctg taacccaggc tacgccatgc acggcggcaa cactctgacc
     3781 tgtctgagtg gtgaccggag agtgtgggac agaccactgc cctcctgtgt agcggaatgt
     3841 ggtggtcaga tccacgctgc cacttcagga cgcatcttgt ctcctggcta ccccgctcca
     3901 tatgacaaca acctccactg cacctgggtt gtagaggcag acccgggaaa gaccatcagc
     3961 ctccacttca tcgtgtttga cacggagctg gcccatgaca tcctgaaggt gtgggacggg
     4021 ccggtggaca gcgccatcct gctgaaggag tggagcggct cagcactgcc cgaggacatt
     4081 cacagcacct tcaattcgct cactctgcag ttcgacagcg acttcttcat cagcaagtcc
     4141 ggcttctcca tccagttctc aacatccatc gcgtccacct gcaacgaccc aggtatacct
     4201 caaaatggca cccgctatgg ggacagcaga gagccaggag ataccatcac tttccagtgt
     4261 gaccctgggt accagctcca aggacaagcg aaaatcactt gtgtgcagct gaataaccga
     4321 ttcttttggc aaccagaccc tcctacatgc atagcggcct gtggtgggaa tctgactggc
     4381 ccggccggtg tcatcctgtc ccccaactac ccgcagccct atcctcccgg gaaagagtgt
     4441 gactggagaa taaaggtgaa cccagacttc gtcatcgcct tgatattcaa aagtttcaac
     4501 atggagccca gctatgattt cctacatatc tatgaaggag aggattccaa cagccctctc
     4561 attggaagtt tccagggctc tcaagcccca gaaagaattg agagtggtgg aaatagtctc
     4621 tttctggcat ttcgaagtga tgcttctgtg ggcttgtcgg ggttcgccat tgaatttaaa
     4681 gagaaaccac gggaagcctg ttttgaccct ggaaacataa tgaatgggac aaggattggg
     4741 acggacttca aacttggctc aactgtcacg taccagtgtg actctggcta caagatcgct
     4801 gacccgtctt ccatcacgtg tgtgatcgga gcggatggaa aacccgcctg gaaccgggtc
     4861 ttgccctcct gcaatgcccc ctgtggaggc cagtacactg gatcagaagg ggtggtcttg
     4921 tcacccaact accctcacaa ttatacagct ggtcagatct gcctctattc cataacggta
     4981 ccaaaggaat ttgtggtatt tgggcagttt gcctatttcc agacagcact gaatgacttg
     5041 acagaactgt ttgatggaac gcaccctcag gccagacttc tcagttcact ctctgggtct
     5101 cattcaggtg aaacgttgcc tttggccaca tccaatcaga ttctgctccg attcagcgcg
     5161 aagagtgggg cgcctgcacg gggtttccac ttcgtctatc aagctgttcc tcggaccagt
     5221 gacacccagt gcagctctgt tcccgagccc agatatggga ggagaattgg tttggagttt
     5281 tcagcaggct ccatcgttcg ctttgagtgt aacccaggat acctactcca gggctccatg
     5341 gccatccgct gtcagtccgt gcccaacgct ctcgctcagt ggaatgacac aatcccaagc
     5401 tgcgtagtac cctgcagtgg caatttcact cagcggagag gtacaatttt atcccccggc
     5461 taccctgaac catatggtaa caacttaaac tgtatatgga agatcatagt tacagaggga
     5521 tcgggaattc agattcaagt catcagtttt gccacagagc agaactggga ctctcttgag
     5581 atttatgatg gcggtgatgt ggctgcaccg agactgggaa gtttttcagg taccaccgtg
     5641 ccagcactgc tcaacagcac atccaatcag ctctacctgc atttccagtc ggatatcagc
     5701 gtggcagctg ctggcttcca cctggaatac aaaaccgtag gtcttgctgc ttgccaagag
     5761 ccagcccttc ccagcaacag catcaaaaca ggagaccgat acatggtgaa cgatgtgctg
     5821 tcctttcagt gcgagcctgg gtacacgctg cagggccgtt cccacatctc ctgtatgcca
     5881 gggactgttc gtcgttggaa ctacccgtct cccctttgca ttgcgacctg cggggggacc
     5941 ttgagcagca tggggggcgt gatcctgagc ccggggttcc cgggcaccta ccccagcaac
     6001 ctggactgca cctggaagat cgccttgccc actggctacg gtgcacatat tcaatttctg
     6061 aatttttcta ccgaagctaa tcatgactac cttgaaattc aaaacggacc tttccacacc
     6121 agcccgatga tggggcagtt cagtggcccc gacctgcctg cgcccttgct gagcacaact
     6181 catgaaacgc tcatccactt ttacagcgac cactcgcaga accggcaggg atttaaactc
     6241 acttaccaag cctatggatt acagaactgc ccagacccgc cgccttttca gaatgggtat
     6301 atgatcaact cggactacag tgtggggcag tcggtatctt ttgagtgtta ccctgggtac
     6361 attttaatcg gccaccgagt cctcacctgt cagcatggga tcaacaggaa ctggaactac
     6421 ccttttccaa ggtgtgatgc tccttgcggg tataatgtga catctcagaa cgggaccatc
     6481 tattcccctg gctttccgga cgagtacccc attctgaagg actgtgtctg gctcatcatg
     6541 gtgccgcctg gtcatggcgt ctacatcaac ttcaccttgc tgcagactga agctgtcaac
     6601 gactacatcg ctgtttggga tggtcccgat cagaattcgc ctcagctggg agttttcagt
     6661 ggaaacacag ccctggaaac agcgtacagt tccaccaatc aagtcctgct gaagtttcac
     6721 agcgactttt caaatggagg tttctttgtc ctcaattttc atgcattcca gctcaagaaa
     6781 tgtcagcctc ccccagcagt tccacaggca gaaatgctta ctgaggatga ggattttgaa
     6841 ataggagact ccgtgaagta ccagtgccac cctgggtaca cgctgtccgg gacagacacg
     6901 ctgacctgta tgctcggctc gcaactgcag tttgaaggct ctctcccgac gtgtgaagca
     6961 caatgcccag ccagtgaagt ccggacagaa tcttctgggg tcatccttag tccagggtat
     7021 ccaggcaact attttaactc ccagacgtgc tcgtggagca tcagagtgga gccaaactac
     7081 aacatcacga tcttcgtgga cattttccaa agtgaaaagc agtttgatgc actggaagta
     7141 tttgatggct cttctggtca aagtcctctg ttagtggtct tgagtggaaa ccatactgaa
     7201 cagtcaaatt ttacaagcag gagtaatcag ttatatctcc gctggtccac tgatcatgca
     7261 accagtaaaa aaggattcaa gattcgttat tcggcacctt actgcagctt gacccacacc
     7321 ctgaagaatg gtggtgtttt aaataggact gcaggagaag ttggaagtaa agtgcattat
     7381 ttttgcaagc ctggatatcg gatgattggc catagcaatg caacctgtag acggaatcca
     7441 gttggcatgt atcagtggga ttccctcgct ccactctgcc aggctgtgtc ctgtggaatc
     7501 ccggagtccc caggaaacgg ctcattcacg gggaatgagt tcacgttgga tagtaaagtg
     7561 acctatgagt gtaacgaggg ctttaagctg gacgccggtc aacaggctac agctgtgtgt
     7621 caagaagatg gattgtggag taacaggggg aagcccccaa cgtgtaaagc ggtcacttgc
     7681 cctggcattg aagcccagct ctcagaacat gtcacctgga gactggtgtc aggatccctg
     7741 aatgagtatg gagcccaggt ggtgctgagc tgcagccccg gatattacct ggagggccag
     7801 aggctggtgc agtgccacgc caacggctca tggagcatag gggtggagag gccgagatgc
     7861 agagtgatct cgtgtggaag cctgtccttt cccccgaatg ggaacaagat tggaacaatg
     7921 acagtgtatg gcgccacagc catattcacg tgtaacacag gctacacact tgtgggttct
     7981 cacgtcagag aatgcttggc caatgggctc tggagcggcc ccgagactcg ctgtctggct
     8041 ggccactgcg gctccccgga tcccatcgtg aacggccaca tcagcggcga cggcttcagt
     8101 tacagggaca ccgtggttta tcagtgcaac cccggtttcc ggctcgtggg gacttccgtc
     8161 cggatatgct tgcaagacca caagtggtcc ggacacaccc cagtctgtgt ccccatcacc
     8221 tgtggccacc cagggaaccc tgcgcacggt ttcactaatg gcagcgagtt caacctgaat
     8281 gatgtcgtga acttcacctg caacaccggc tacttgttgc agggtgcatc tcgagcccag
     8341 tgtaggagca acggccagtg gagcagccct ctgcccacct gccgagtggt gaactgctcg
     8401 gatccaggct ttgtggaaaa tgccgttcgt cacgagcaac agaacttccc tgagagtttt
     8461 gaatatggaa cgagtgtcgt gtatcactgc aagaagggat tttacttgct gggatcttct
     8521 gccttaacct gtatggcaaa tggcttatgg gatcgctctt tgcccaagtg tttggttatt
     8581 tcgtgtggac acccaggggt ccctgccaac gccatcctaa ctggagacct gtttacatct
     8641 ggggccgtgg ttcactactc atgccaaggg agacggagtc tcgtaggcaa cagcagcagg
     8701 acttgccagg aggacagtca ctggagcgga gccctgcccc actgcacagg aaataatcct
     8761 ggattttgcg gtgatccagg gaccccagca catgggtctc ggcttggaga tgagtttaag
     8821 gccaagagcc ttctccgctt ctcctgtgaa atgggctacc agctgcgggg ctcggcagag
     8881 cgaacgtgtc tgctcaacgg gtcatggtca ggactgcagc ccgtgtgcga ggccgtgtcc
     8941 tgtgggaacc cggggacgcc cacccacggc atgatcgtca gcagcgacgg cgtcctgttc
     9001 tccagctccg tggtctacgc ctgctgggac ggctacagga cctcggggct gaccacgcgg
     9061 cactgcaccg ccaacgggac ctggacgggt acagcccccg actgcacact tataagctgt
     9121 ggagatccag gtacaccagc aaatggcctc cagtttggga cagatttcac cttcaacagt
     9181 acggtcagct accagtgtaa ccccggctac accatggagc ctgccacgtc ctccactatc
     9241 cgctgcacca aagacagtgc gtgggatcac agcaaaccta cctgcagagc tgtcatgtgt
     9301 ggtcaacctc ctccagttca ggatgggaaa gtggaaggat cagatttacg ctggggcgcc
     9361 agtgtgagct acagctgcgc ccagggcttc cagctctctc accccgccat cctctcctgc
     9421 gaaggccgtg gcgtgtggaa aggagaggtc ccccaatgcc tgcctgtgtt ctgtggagac
     9481 ccgggcacgc ctgctgaggg acgactcagt gggaaaagct tcacctatag atctgaagtc
     9541 ttcttccagt gcagatctcc cttcatcctg gtggggtcat cacggagagt ctgccaagcg
     9601 gatggcacgt ggagtggcac acagcccacc tgcatcgatc ccgctcacaa cacctgccca
     9661 gaccccggta ccccacagtt tggaatacag aatagctcaa gaggatacga ggttggaagc
     9721 atggtgtttt tccggtgcag aaaaggttac cacgttcaag gttctacaac gcgaacttgc
     9781 ctggcgaacc tgacgtggag cggcatccag acagagtgca tccctcacgc ctgccgccag
     9841 cctgaaacgc cagcccacgc ggacgtgagg gccatcgacc tccccacttt cggttacacc
     9901 ttagtgtaca cctgccatcc gggattcttc ctcgcgggtg gatctgagca caggacgtgt
     9961 aaagcggaca tgaaatggac agggaagtca cctgtctgta aaagtaaagg agtgagagaa
    10021 gttaatgaaa cagttactaa aactccagtt ccttcagacg tatttttcat ccattcagtg
    10081 tggaagggat attacgaata tttagggaaa agacagcctg caaccctaac tgttgactgg
    10141 ttcaacgcaa caagcagcaa ggtgaacgca accttcgttg aagccgccca gggggagctg
    10201 aagttggcag gtgtttacaa gaaggaagag gcccacttac ttctgaaagc ttttcaaatt
    10261 aaaggcccag tggatatttt tgtcagcaac tttgaaaacg acaactgggg actggatggt
    10321 tacgtatcat ccggacttga aagaggagga tttactttcc aaggtgacat acatggaaaa
    10381 gattttggga agttcaagct ggaaaggcaa ggcgcccgaa gctcggctcc agaccccgcg
    10441 cgcccccagc gcggcgccag cagcggctcc gtcgcggccg ccatcctggc cccgctctcc
    10501 gcgctcgttc tctccgggct cgcgtttcac ctccacaagc acagagcgag gccgaaggtc
    10561 cagtacaacg gctacgccgg ccacgagagc agcaacgggc aggcctcctt cgagaacccc
    10621 atgtacgaca cgaacttgaa gcccaccgag gccaaggccg tgcgcttcga cacgaccctg
    10681 aacacggtgt gcaccgtggt gtag
//
LOCUS       XR_004347902             218 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746865
            (LOC116746865), ncRNA.
ACCESSION   XR_004347902
VERSION     XR_004347902.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..218
                     /gene="LOC116746865"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746865"
     ncRNA           1..218
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746865"
                     /product="uncharacterized LOC116746865"
                     /db_xref="GeneID:116746865"
ORIGIN      
        1 tccaatccca ccatatacac aacatcacct tctttggatg aagactggcc tttggtgtgg
       61 tggtggtggt tcatttcact tgccccacga tcttttccat tccacgttat tgcaccgtat
      121 ccacttttca ttgcccgtca cagtttgttt gaaaaatgga acgttttgct gggcttccct
      181 ggtggcgcag tggttgagag tccgcctgcc gatgcagg
//
LOCUS       XM_032618624             204 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus beta-defensin 103A-like (LOC116746866),
            mRNA.
ACCESSION   XM_032618624
VERSION     XM_032618624.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..204
                     /gene="LOC116746866"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins"
                     /db_xref="GeneID:116746866"
     CDS             1..204
                     /gene="LOC116746866"
                     /codon_start=1
                     /product="beta-defensin 103A-like"
                     /protein_id="XP_032474515.1"
                     /db_xref="GeneID:116746866"
                     /translation="MRVYYLLFALFFLFLLPVPGGARFINILQRYYCKVRGGRCALFG
                     CLPREIPIGTCSRSGRKCCQRQR"
     misc_feature    85..192
                     /gene="LOC116746866"
                     /note="Beta defensin; Region: Defensin_beta; pfam00711"
                     /db_xref="CDD:459914"
ORIGIN      
        1 atgagggtct actaccttct ctttgcgttg ttcttcttgt tcttgctgcc tgttccaggt
       61 ggtgcaagat tcataaatat attacagagg tattattgca aagtgagagg cggccggtgt
      121 gctctgtttg gctgtcttcc aagggagata cccataggca cttgttcccg cagtggtcga
      181 aaatgctgcc aaaggcagag atga
//
LOCUS       XM_032618625            2071 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus nei like DNA glycosylase 3 (NEIL3), mRNA.
ACCESSION   XM_032618625
VERSION     XM_032618625.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2071
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2071
                     /gene="NEIL3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 6 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746867"
     CDS             76..1896
                     /gene="NEIL3"
                     /codon_start=1
                     /product="endonuclease 8-like 3"
                     /protein_id="XP_032474516.1"
                     /db_xref="GeneID:116746867"
                     /translation="MVEGPGCTLNGEKIRVRVRPGQAVTDMRGRALQSPGGPGSPPSA
                     SGAAGSSQAAALNNNKDSSQNFLRLFNGHIYSGVETLGKELFMYFGPKALRIHFGMKG
                     FLVINPVKSKNKNGLSPVFEVQLTKDLICFFDSSVEIRNSAESQQRIRMMEELDVCSP
                     NFSFSRAESEVKKQRGRMLCDVLMDQKVLPGVGNIIKNEALFDSGLHPAVKVCQLTDE
                     QTHHLVKMIRDFSLLFYRCRKAGSAVSNHYKVYKRPNCGQCCCKITVCRLGENKRMTY
                     FCPHCQKENAQHVDICRLPARNTTVSWPSSRGGHLMASVARKSEEQWTCEVCTLINKP
                     SSEACDACLTSRPTDSVPKNEENPIAFNSLVKYPCNSFGKPRTEVKINRKTAFGTTTL
                     VLTDVSNKSSALERGESQNQILDGEFPSPPTNVWFSDAAHPSKERTNYRTQLSNKVNT
                     SSVACSPSELLSPAYKRLKTSHCSSRDLKSGKPGSSNRERQSNTPGGPRSLNACSPRC
                     SKHDRPCILQVVRKDGENKGRHFYACPLPREAQCGFFEWADLSFPFCSHGKRSIMRTV
                     LKIGPNNGKNFFVCPLGKEKQCGFFQWAENGPGINIIPGC"
     misc_feature    76..534
                     /gene="NEIL3"
                     /note="N-terminal domain of metazoan Nei-like glycosylase
                     3 (NEIL3); Region: MeNeil3_N; cd08969"
                     /db_xref="CDD:176803"
     misc_feature    order(79..84,322..324,364..366,370..378,424..429)
                     /gene="NEIL3"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:176803"
     misc_feature    79..81
                     /gene="NEIL3"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:176803"
     misc_feature    order(82..93,97..102,109..111,313..327)
                     /gene="NEIL3"
                     /note="putative H2TH interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:176803"
     misc_feature    order(82..84,322..324)
                     /gene="NEIL3"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:176803"
     misc_feature    268..924
                     /gene="NEIL3"
                     /note="Formamidopyrimidine-DNA glycosylase [Replication,
                     recombination and repair]; Region: Nei; COG0266"
                     /db_xref="CDD:440036"
     misc_feature    1030..1116
                     /gene="NEIL3"
                     /note="Zn-finger in Ran binding protein and others;
                     Region: zf-RanBP; pfam00641"
                     /db_xref="CDD:395516"
     misc_feature    1042..1101
                     /gene="NEIL3"
                     /note="RanBP2-type Zn finger [structural motif]; Region:
                     RanBP2-type Zn finger"
                     /db_xref="CDD:275376"
     misc_feature    1591..1728
                     /gene="NEIL3"
                     /note="GRF zinc finger; Region: zf-GRF; pfam06839"
                     /db_xref="CDD:462017"
     misc_feature    1732..1866
                     /gene="NEIL3"
                     /note="GRF zinc finger; Region: zf-GRF; pfam06839"
                     /db_xref="CDD:462017"
ORIGIN      
        1 gcgcagacgt gaggttgcgc ggcagttttc tcagcggggc cgtgcagcat agtgggacac
       61 agggcggccc gggaaatggt ggaaggaccg ggctgtactc tcaatggaga gaagattcgg
      121 gtgcgagtgc gcccgggcca ggcggtgacg gacatgcggg gccgagcgct gcagagccca
      181 ggggggcccg gctcgccgcc ctcggcctct ggggctgcgg gctcctcaca ggctgctgca
      241 ctgaataata ataaagattc cagccagaat ttcttgagac tgtttaatgg gcacatttac
      301 agtggcgtgg aaactttggg gaaggagctc tttatgtact ttgggccaaa agctttacgg
      361 attcattttg gaatgaaagg cttcctcgtg attaatccag ttaagtctaa aaataaaaat
      421 ggactttctc ctgtttttga agtacagctc accaaagatc tgatttgttt ctttgactca
      481 tcagtagaaa tcagaaactc agcagaaagc caacagagaa taagaatgat ggaagaatta
      541 gatgtatgtt cacctaactt cagtttctca agagcagaaa gtgaagtgaa aaagcagaga
      601 ggacggatgc tgtgtgatgt gttaatggat cagaaagtgt tacccggcgt gggaaacatc
      661 atcaaaaatg aagctctctt tgacagtggt ctccatcccg ctgttaaagt ttgtcagtta
      721 acagatgaac agacacatca ccttgtgaaa atgatacgtg atttcagcct tcttttttac
      781 aggtgccgca aagcaggatc tgctgtctct aaccactata aggtttacaa gcgtcctaat
      841 tgtggtcagt gctgctgcaa aataactgtg tgtcgcttag gggagaataa gagaatgaca
      901 tatttctgtc ctcactgtca gaaggaaaat gctcaacatg tcgacatatg caggctgcca
      961 gctagaaata ctacagtcag ttggccatcc agcagagggg gtcatcttat ggcctctgtg
     1021 gcccggaagt ctgaagagca gtggacatgt gaggtctgta cgctaataaa taagccgtct
     1081 tctgaagcat gtgatgcttg cctgacttca aggcctacgg attcggtacc caagaatgaa
     1141 gagaatccca tcgcctttaa cagtttagtg aaataccctt gtaatagctt tggaaaacca
     1201 aggacggaag tgaagatcaa caggaaaact gcatttggaa ctacaaccct tgttttgacg
     1261 gatgtcagca ataaatccag tgctttggaa agaggagaaa gccaaaacca gatactagac
     1321 ggggaatttc caagccctcc tactaacgtt tggtttagtg atgcagcgca cccctccaag
     1381 gagagaacaa actacagaac tcaactatct aacaaagtaa acacatcatc tgtggcctgc
     1441 tctccctctg aattattgag tccagcatat aaaagattaa aaacaagcca ctgctcatca
     1501 cgggatctca aaagtggcaa acctggatct tctaacaggg agcgtcagag taacactcca
     1561 ggtggtcctc gttcattaaa tgcctgcagt ccccgctgca gtaaacatga ccgcccctgc
     1621 attctccaag tggtgaggaa ggatggagaa aacaagggca ggcactttta tgcttgtcct
     1681 ctaccgagag aagcacaatg tggatttttc gaatgggcag atttgtcctt cccattctgc
     1741 agccatggca aacgctccat catgagaaca gtgttgaaga ttggacctaa taatggaaag
     1801 aatttttttg tgtgccctct tgggaaggaa aaacagtgcg gttttttcca atgggcagaa
     1861 aatgggccag gaataaacat tattccagga tgctaaagtt attgcagtat ttgagaactc
     1921 ttccttttat ttgtgtgcca tcttttcatt cagtgttttt ttttttgcct tgatgaatga
     1981 tgctctatgt gttttatcaa atatacaata tattccattt agaatgtata tttaatgcat
     2041 ttagttatga caataaagta tttttagtat g
//
LOCUS       XR_004347903            5447 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746868
            (LOC116746868), transcript variant X1, ncRNA.
ACCESSION   XR_004347903
VERSION     XR_004347903.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5447
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5447
                     /gene="LOC116746868"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746868"
     ncRNA           1..5447
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746868"
                     /product="uncharacterized LOC116746868, transcript variant
                     X1"
                     /db_xref="GeneID:116746868"
ORIGIN      
        1 gttcaaccac ccttatggga agagtgtttc acagtggtga gaatcctgat acagacatct
       61 agagaaggac tgacattggc tgctttaggt tccgctacga cttctgatgt cgcctgtggt
      121 taaaaggata attcagtttc accaagtgtt ttcttctttt ggacccgatt gtaaagccac
      181 tcatttgcta tataatgagg aaacattttt tttggcaaag cctctattcg ttatccagcc
      241 tctctctctg caccttgtcc accctcaagg cctgtggaag gaagcggaac aaatgtacct
      301 tgagaaagaa gaggatgtga tatagtgtga aatccttcta aaccagaaga caaaagagag
      361 gggaaatctg ctccttaaat aatggtgaaa tggtgacgag gaaaaggata agaaaagaaa
      421 gtaggtatgt ttctctttca actctctctt ctagaatgaa agggaaggcc ggggctctta
      481 gatcatttga aggggaaaca aatcaaaggg acttacgctc ctttttctaa ctcgaacttt
      541 gggagaaggc tgttcacagg caggtcccat attaacaatg gagaccgcag aggaactgcc
      601 accagcataa taaaaagcgt gaagccccag ggcccatctg ccaaggggca gctgtatcag
      661 ggccactgag ctgtggaagc agcattgttg actgaggcag aaagtgggtc tgagttggca
      721 ttttcaagct tctgtgtgtc atggaaagga ttcagaagca ggaggtccct gagctaaggg
      781 ccagcaagtc tgccaatgaa gcaccatggt gagagatcca ctgctgggca gaggcccatg
      841 aggtgccaca gcatggctga ggctcagact cagaggcatc aacagcacca gtcaccaagg
      901 gatgtccttc cagagtaaat agaacaagcc acagtttcaa ctggtacttc ggaacaaaga
      961 caagtgaagc tgcaaataaa agcttgtgga ctgaagtctc tctctcccct ttgctaaaaa
     1021 ggcacccaat ttcctcttca ctcacctgga caccatcttg tggaggagct atgtgcttgt
     1081 gcattactaa gcagtccagt cctactgcat ccttggtcct gcacttatta gcggtgtagc
     1141 cttgttgatc attggtttcc gtcaagaatc cagaggggca ctgatgtctg cccataagtg
     1201 tgtaaatttt cagcatgtct ttcctgaatg ggcatgaaaa agctgtgaaa caccgggaaa
     1261 ctgagatgct ctattctagc aagacgccac ctggtaagaa ccacgtctac gtctgtagct
     1321 aagtatcagg gacttcgtct cattttgtag tggttgtgca tgtgttgttt cttccagcct
     1381 accttaaata ataaactttc caattccttt gtccattctg ggttctgtgc tgaggccgag
     1441 tgccattttg atacagataa tgtgggcatt tttctgagga ttgtgaaata ttagttttga
     1501 agttttggga gatattagtt tccaaacccc tgtcttagta aagatgtagg aagaaagtaa
     1561 ggacagcact gacagatcaa agcagggctg gtaggcatta taggtttggt aaaattggga
     1621 agtttgagaa taagagacag aagaacaagt ttgtaaaacc agcttctgag gtttaacaaa
     1681 tgaagccact taaaagggaa tgttgaaatc actcagatac tagaagctgg gtagaacaca
     1741 atttattgaa cagatgtatt tggaatgtat tgaatttgca ttttctctct gtgatttgta
     1801 cattaaaata tttgccatat ccttatttgt tgtgaaggtg gaatgaatgt gctttccttt
     1861 gaacatgtgc ttcacttgcc tttcactgag tcaaagttat tttgcaaaca gggttccatt
     1921 caaacgttat tgcctgatcc gataacagta acaggtagga cctcttgaag cttttctaat
     1981 catgtaataa ttcactaaat tctcacaaca atcacaggag agagtcaaca ttaccatttc
     2041 acagctgggg acgctgaggc ttggagaagt tcaggaattc ttccaaacct cacacaagtc
     2101 gtaaaagtcg tagaaccaag atgtgaacct agttagccct gctcctgcct tcctgctctt
     2161 aaccaactta tcaaaccaac tagcagagca cattgtttta ttgaaactgc acgttattct
     2221 agagtttgca acttaaatcc aagacagcac tttttccccc ttacgttctc aggttttatt
     2281 catctagctc ttttctacag ggcagtatat ttctatcata aatatactga tgtgtaagta
     2341 tgctgatgcc aatgcagcat ctctaggcac gagaacgaaa tgtattacct tgaaccaccc
     2401 aaatttggtc agtgggttaa agagtagtat ggctgcttct tgtcctcttg acactctggc
     2461 acagcccttt taagctatga gagaatattg gtattcatgt atatccaagt cacagatgcc
     2521 ttaccttttc ttgaatgctc tccagtgcct cagaagcaac gtgatgctga agataaacta
     2581 taagaagagg gctggaggtg tgagagggct acacgtacgg gagatgtgga ccagaacaag
     2641 aaggctggag tcacagtgga tgtctggttt gggaactcgc tgcagctcct agagattacc
     2701 aggtggcatg ttagaactga agtctgctga gcctgttacg tgaactgcaa acatagtttg
     2761 gagtcagacg gtccggcatg tgggccagcc atggggacac tcttgggaaa gggcagtctt
     2821 accaaatcag cccctgcaac agggagcaag gagtcttctt agttcatcca aatctcatct
     2881 ctagccatct ggcgtggatt ccagagagtt tgtgtggtac cctgagttag aaccctgagt
     2941 tcccagtaat aaaaacagga tgaaatgatt gaaggacttg acttttccct agcaagccga
     3001 cttccctgta tccaccagct ccttcctctt ctccaacatg ttatgaaagc taaaggatct
     3061 gtgttcatag caatgtcttc tgtgcctgac cttcagatga cataccatag gcttcctttt
     3121 gaagcatcaa tgctgtttga catcctaagt aatgtggacg taatatgtaa agatgtacag
     3181 tggaagtttt gatttgaagc ctggtagtag gcttcacagt tttgtttcct ggttaggagt
     3241 attttcatgg ttgccaccag aatgcctacg tagggaaaaa aaaagggggt gttgaggaag
     3301 aaatgacagg ggcaaatctt gataaaagtt taattcactg acagacagtc aataggagaa
     3361 aagacattac cagctgcata tattagcaca ttattaacac acccactcag gttttgaaat
     3421 atccatttaa aataacttaa ttaaaaccca gttatagaaa ctttccacac taacaatgaa
     3481 acatctattt tatgatcatt ctacgtcagt ggactttaat ttttaaaaat gaactgcagt
     3541 gccttttaaa aagagcacta aaagggaaaa cctacataat actcatactg tttcaaagat
     3601 atttttgcct tgatttgaga acatgaattc tagtcgtcct ctctaatatg gggaaaacag
     3661 aaagcattct aagcagagga tggctgttag tatttgtcct gttttaagaa gttttcatct
     3721 taggcacatt aaggaactaa actacaaaat ttgtgttttg acaactgtgt aagaaattaa
     3781 tttttaaaat atatacatat tatgtgtgat gtttttataa catgccatcc aattataact
     3841 ttttaaaagt attcagaaaa aaatttatta aacattttag aaaccctgat aaatgtagta
     3901 atatgaatat aaagcaagct ttccagaaaa tcacttccca ttttctattt ttggccagag
     3961 tcctctttca gccagtagag gggtgagcca gacctcacaa agtgaagatg gtgcctcttg
     4021 ttcctctgct tgtcatagac ctcaatctgg ttcagcatcc acgtgtgtgc tgtgcccagc
     4081 ttcccctctt gggagccagc atccgtcaca gcttccatga atagcaagtt atcctaaact
     4141 gtctattgga tcctattaga ttgtaggctc ctttagattt ctttagattg tgcattttag
     4201 gacttccgaa ataagaatgt aattccaaac caaaaataaa gtagtaccag tgtctatttt
     4261 acctaaatgc tcacagatac agtatctcct gtgctcttta cctttgttgt tttcatgatg
     4321 tacacggagc tgtcatagct gttggcagaa ctaacacgtg actggattat aagcaaactt
     4381 tgaaaagaag ggtttatgct tttaacgtta atgcaaaatt gaaagatttg agtttctcac
     4441 ttaagaatgt caataacaca tttgtttatt tcctacctcc ctcaaacaaa tttttccttg
     4501 cacaatatat ttgtaatata tgagtgcaca aacacgtcag tgtttacaca ttggaaaact
     4561 gagattttag tattaatgtt gccattcagc ttttcgtcag gcttttcctg ctcagaaaca
     4621 tttgagtttt ccctattttc tacatcatca atcccaaact cctctatctg gtcgtcaatc
     4681 catcccctct ccaatcaggc tccacccgtc ccatcaaata tattctttga attcccagtg
     4741 agcacacact tatcaagccc ttctccctca cctgtgctca cctgcaccaa tctccaggca
     4801 actctctcaa ttcaaagatc aaacattctc tagctcagtc cttacataat caatttccta
     4861 atttagcact gaatttgata tttagttata cattgcatca atttgtaata tgatgctatt
     4921 attaaattat tttctatgtc tcactctgtt ttcctcaact gttctggaag cataaacaac
     4981 taaatcatga aggggtaagt atgaagttca gaaataatcg aactgttagc aatgccattt
     5041 cccgggttgg gggccgagcg ggttgggatg actgaaagca gaagacaact ccggaacctg
     5101 ctcatttcca gcaaggacag caatagtaac ttctcctagc agcagcccca tcctataaat
     5161 attcaagccc tcaccctacc aaggggtcgc ttgcggtcct gagaaatcag ggttggggaa
     5221 gtaaagagag gaacagtctc tcatcagttt aggactttcc attgttataa tctcattgct
     5281 ccaagagttg tttaaagaca cggttgaatg gaattaagtc tgcccttatt tttcaaccca
     5341 gatggaaaaa aagtgaagca ttcatgaaat acaaatctaa gatgactttt ctgaaattgt
     5401 attttcttcc tggaaatggc atagcaaaag ctataacaaa atgttta
//
LOCUS       XR_004347904            4195 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746868
            (LOC116746868), transcript variant X2, ncRNA.
ACCESSION   XR_004347904
VERSION     XR_004347904.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4195
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4195
                     /gene="LOC116746868"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746868"
     ncRNA           1..4195
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746868"
                     /product="uncharacterized LOC116746868, transcript variant
                     X2"
                     /db_xref="GeneID:116746868"
ORIGIN      
        1 tcctgataca gacatctaga gaaggactga cattggctgc tttaggttcc gctacgactt
       61 ctgatgtcgc ctgtggttaa aaggataatt cagtttcacc aagtgttttc ttcttttgga
      121 cccgattgta aagccactca tttgctatat aatgaggaaa catttttttt ggcaaagcct
      181 ctattcgtta tccagcctct ctctctgcac cttgtccacc ctcaaggcct gtggaaggaa
      241 gcggaacaaa tgtaccttga gaaagaagag gatgtgatat agtgtgaaat ccttctaaac
      301 cagaagacaa aagagagggg aaatctgctc cttaaataat ggtgaaatgg tgacgaggaa
      361 aaggataaga aaagaaagta ggtatgtttc tctttcaact ctctcttcta gaatgaaagg
      421 gaaggccggg gctcttagat catttgaagg ggaaacaaat caaagggact tacgctcctt
      481 tttctaactc gaactttggg agaaggctgt tcacaggcag gtcccatatt aacaatggag
      541 accgcagagg aactgccacc agcataataa aaagcgtgaa gccccagggc ccatctgcca
      601 aggggcagct gtatcagggc cactgagctg tggaagcagc attgttgact gaggcagaaa
      661 gtgggtctga gttggcattt tcaagcttct gtgtgtcatg gaaaggattc agaagcagga
      721 ggtccctgag ctaagggcca gcaagtctgc caatgaagca ccatggtgag agatccactg
      781 ctgggcagag gcccatgagg tgccacagca tggctgaggc tcagactcag aggcatcaac
      841 agcaccagtc accaagggat gtccttccag agtaaataga acaagccaca gtttcaactg
      901 gtacttcgga acaaagacaa gtgaagctgc aaataaaagc ttgtggactg aagtctctct
      961 ctcccctttg ctaaaaaggc acccaatttc ctcttcactc acctggacac catcttgtgg
     1021 aggagctatg tgcttgtgca ttactaagca gtccagtcct actgcatcct tggtcctgca
     1081 cttattagcg gtgtagcctt gttgatcatt ggtttccgtc aagaatccag aggggcactg
     1141 atgtctgccc ataagtgtgt aaattttcag catgtctttc ctgaatgggc atgaaaaagc
     1201 tgtgaaacac cgggaaactg agatgctcta ttctagcaag acgccacctg ggttccattc
     1261 aaacgttatt gcctgatccg ataacagtaa cagtgcctca gaagcaacgt gatgctgaag
     1321 ataaactata agaagagggc tggaggtgtg agagggctac acgtacggga gatgtggacc
     1381 agaacaagaa ggctggagtc acagtggatg tctggtttgg gaactcgctg cagctcctag
     1441 agattaccag gtggcatgtt agaactgaag tctgctgagc ctgttacgtg aactgcaaac
     1501 atagtttgga gtcagacggt ccggcatgtg ggccagccat ggggacactc ttgggaaagg
     1561 gcagtcttac caaatcagcc cctgcaacag ggagcaagga gtcttcttag ttcatccaaa
     1621 tctcatctct agccatctgg cgtggattcc agagagtttg tgtggtaccc tgagttagaa
     1681 ccctgagttc ccagtaataa aaacaggatg aaatgattga aggacttgac ttttccctag
     1741 caagccgact tccctgtatc caccagctcc ttcctcttct ccaacatgtt atgaaagcta
     1801 aaggatctgt gttcatagca atgtcttctg tgcctgacct tcagatgaca taccataggc
     1861 ttccttttga agcatcaatg ctgtttgaca tcctaagtaa tgtggacgta atatgtaaag
     1921 atgtacagtg gaagttttga tttgaagcct ggtagtaggc ttcacagttt tgtttcctgg
     1981 ttaggagtat tttcatggtt gccaccagaa tgcctacgta gggaaaaaaa aagggggtgt
     2041 tgaggaagaa atgacagggg caaatcttga taaaagttta attcactgac agacagtcaa
     2101 taggagaaaa gacattacca gctgcatata ttagcacatt attaacacac ccactcaggt
     2161 tttgaaatat ccatttaaaa taacttaatt aaaacccagt tatagaaact ttccacacta
     2221 acaatgaaac atctatttta tgatcattct acgtcagtgg actttaattt ttaaaaatga
     2281 actgcagtgc cttttaaaaa gagcactaaa agggaaaacc tacataatac tcatactgtt
     2341 tcaaagatat ttttgccttg atttgagaac atgaattcta gtcgtcctct ctaatatggg
     2401 gaaaacagaa agcattctaa gcagaggatg gctgttagta tttgtcctgt tttaagaagt
     2461 tttcatctta ggcacattaa ggaactaaac tacaaaattt gtgttttgac aactgtgtaa
     2521 gaaattaatt tttaaaatat atacatatta tgtgtgatgt ttttataaca tgccatccaa
     2581 ttataacttt ttaaaagtat tcagaaaaaa atttattaaa cattttagaa accctgataa
     2641 atgtagtaat atgaatataa agcaagcttt ccagaaaatc acttcccatt ttctattttt
     2701 ggccagagtc ctctttcagc cagtagaggg gtgagccaga cctcacaaag tgaagatggt
     2761 gcctcttgtt cctctgcttg tcatagacct caatctggtt cagcatccac gtgtgtgctg
     2821 tgcccagctt cccctcttgg gagccagcat ccgtcacagc ttccatgaat agcaagttat
     2881 cctaaactgt ctattggatc ctattagatt gtaggctcct ttagatttct ttagattgtg
     2941 cattttagga cttccgaaat aagaatgtaa ttccaaacca aaaataaagt agtaccagtg
     3001 tctattttac ctaaatgctc acagatacag tatctcctgt gctctttacc tttgttgttt
     3061 tcatgatgta cacggagctg tcatagctgt tggcagaact aacacgtgac tggattataa
     3121 gcaaactttg aaaagaaggg tttatgcttt taacgttaat gcaaaattga aagatttgag
     3181 tttctcactt aagaatgtca ataacacatt tgtttatttc ctacctccct caaacaaatt
     3241 tttccttgca caatatattt gtaatatatg agtgcacaaa cacgtcagtg tttacacatt
     3301 ggaaaactga gattttagta ttaatgttgc cattcagctt ttcgtcaggc ttttcctgct
     3361 cagaaacatt tgagttttcc ctattttcta catcatcaat cccaaactcc tctatctggt
     3421 cgtcaatcca tcccctctcc aatcaggctc cacccgtccc atcaaatata ttctttgaat
     3481 tcccagtgag cacacactta tcaagccctt ctccctcacc tgtgctcacc tgcaccaatc
     3541 tccaggcaac tctctcaatt caaagatcaa acattctcta gctcagtcct tacataatca
     3601 atttcctaat ttagcactga atttgatatt tagttataca ttgcatcaat ttgtaatatg
     3661 atgctattat taaattattt tctatgtctc actctgtttt cctcaactgt tctggaagca
     3721 taaacaacta aatcatgaag gggtaagtat gaagttcaga aataatcgaa ctgttagcaa
     3781 tgccatttcc cgggttgggg gccgagcggg ttgggatgac tgaaagcaga agacaactcc
     3841 ggaacctgct catttccagc aaggacagca atagtaactt ctcctagcag cagccccatc
     3901 ctataaatat tcaagccctc accctaccaa ggggtcgctt gcggtcctga gaaatcaggg
     3961 ttggggaagt aaagagagga acagtctctc atcagtttag gactttccat tgttataatc
     4021 tcattgctcc aagagttgtt taaagacacg gttgaatgga attaagtctg cccttatttt
     4081 tcaacccaga tggaaaaaaa gtgaagcatt catgaaatac aaatctaaga tgacttttct
     4141 gaaattgtat tttcttcctg gaaatggcat agcaaaagct ataacaaaat gttta
//
LOCUS       XM_032618627            3438 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chondroitin sulfate
            N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript
            variant X1, mRNA.
ACCESSION   XM_032618627
VERSION     XM_032618627.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3438
                     /gene="CSGALNACT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746869"
     CDS             496..2070
                     /gene="CSGALNACT1"
                     /codon_start=1
                     /product="chondroitin sulfate
                     N-acetylgalactosaminyltransferase 1"
                     /protein_id="XP_032474518.1"
                     /db_xref="GeneID:116746869"
                     /translation="MVRRGLLAWVSRVVVLLVLLCCVVSVLYMLACTPRGDDEQLGLP
                     RANGPTGKDGYQAAMQEWEERHRDYISSLQRQITQLQEELRERSEQLRTAQRQAGDPA
                     GPPGRAQADLLAFLRSQVDRAEVHTGVKQATEYAAVPFDSFTLHKVYQLETGLTRHPE
                     EKPVRKDKRDELVEVIQLAVEALNSPAESSPDQRPYTASDFIEGIYRTEKDKGTLYEL
                     TFRGDHKHEFRRLVLFRPFGPIMKVKKEDLNMAGTLVNVIVPLARRVDKFRQFMQNFR
                     EMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDV
                     GARSWTGRNVLLFFCDVDIYFTSELLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHD
                     SIPPLEKQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYL
                     HSNLIVVRTPVRGLFHLWHEKRCVDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEI
                     EAHLRKQERETRSQKT"
     misc_feature    703..1992
                     /gene="CSGALNACT1"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     Region: CHGN; pfam05679"
                     /db_xref="CDD:461712"
ORIGIN      
        1 ctttggttca cacactcttg gcccttttgt gaagcctgtt aaggccagaa acagaattcc
       61 tcctaatttg gataaagttt gccgagggca tctgtagcaa accaccggca cacagacaga
      121 ttcctttcca tttcaaggag agaagtcaag atattattac ccagtgaaaa aatgatgtag
      181 tttcatcgta accttctttt cctatacttc aggttccctc tggaaggcta tgatgggaat
      241 gagcgtgaca acttggacgg ttcccctgac tcgttgcctc tgcctggaag ttcatccttt
      301 agaagtcagg aacctgctgc ccttggtggt ggactcccag gaacaagacg cagtgtagac
      361 cgaaatggat gagagcagct cggggacccc cggacgtgtg ctccctgtgg tctagtccag
      421 ggacgcccct cacaggccgg gtggtctggg atgaacgccg cggctgctgg acgcgtggct
      481 gatccctgag cgaggatggt gcgccggggg ctgctcgcct gggtctcccg ggttgtggtc
      541 ttgcttgtgc tcctctgctg cgtcgtctct gtcctctaca tgctagcctg cacgccaagg
      601 ggcgatgacg agcagctggg gctgccccgg gccaatggcc ccacggggaa ggacgggtac
      661 caggcggcga tgcaggagtg ggaagaacgt caccgcgact acatcagcag cctccagagg
      721 cagatcacac agctccagga ggagctgcgg gagaggagcg agcagctcag gaccgcgcag
      781 cgtcaggcgg gagaccccgc cggcccccct gggagggccc aggccgacct gctggccttc
      841 ctgcgctccc aggtggacag ggcggaggtg cacactggcg tcaagcaggc caccgagtat
      901 gccgctgtgc cctttgacag cttcaccctg cacaaagtgt accagctgga gacgggcctg
      961 acccgccacc ccgaggagaa gcccgtgcgc aaggacaagc gggatgagct ggtggaggtc
     1021 atccagctgg ccgtggaggc cctgaacagc ccggccgaaa gcagccccga ccagcgtcct
     1081 tacacggcct cggacttcat cgaagggatc taccgcacag aaaaggataa aggcactttg
     1141 tacgagctca cgttcagagg ggaccacaag cacgagttca gacgccttgt cttgttccga
     1201 ccgtttggcc ccatcatgaa ggtgaagaag gaggatttga acatggccgg cacgctggtc
     1261 aatgtcatcg tcccactggc caggagggtg gacaagttcc ggcagttcat gcagaatttc
     1321 agggagatgt gcatccagca ggatgggaga gttcatctca ccgtcgttta ctttggaaaa
     1381 gaagaaatga atgaggtcaa aggaatactt gaaaacactt ccaaagccgc caacttcagg
     1441 aacttcacct tcatccagct gaatggggag ttctcccggg gaaaggggct ggacgtgggc
     1501 gcccgctcct ggacggggcg taacgtgctg ctcttcttct gcgacgtgga catctacttc
     1561 acctccgagc tcctcaacac ctgcaggctg aacacgcagc cagggaagaa ggtattttat
     1621 ccggtccttt tcagtcagta caatcctggc ataatatacg gccatcatga ctcgatccct
     1681 cccttagaaa agcagctggt cataaagaag gaaactgggt tctggagaga cttcgggttc
     1741 gggatgacgt gccagtaccg gtctgacttc atcaacatag gtgggttcga cctggacatc
     1801 aaaggctggg gtggcgagga cgtgcacctt taccgcaagt acctgcacag caacctcatc
     1861 gtggtgcgga cgcctgtgcg gggcctcttc cacctctggc atgagaagcg ctgcgtagac
     1921 gagctgacac ctgagcagta caagatgtgc atgcagtcca aggccatgaa cgaggcgtcc
     1981 cacgggcagc tggggatgct ggtcttcagg cacgagatcg aggcccacct ccgcaaacag
     2041 gaacgggaga caaggagcca gaaaacatga gctcccaggg gcccatgtgg ggaaacggtt
     2101 tagttttttc cttttgcaat taccaaatgg atggctgcaa caaggaaaag attgccctga
     2161 agagcaagaa aagaatttga ctgatgaaaa gaatttgatg agtaaagcag gtgaggggag
     2221 agcctcctgt ttccctctgc ctgtttagct tctgcaacag gagctgaaac ccctcaacct
     2281 ggcttgcaaa aacagcccaa acgcacccgt ccggtgtctg acaaaggcgg cctgatggtg
     2341 agattgtgag cctaatggtg tgtttacagc aaagcaagag ctgtttgttt tctatgctta
     2401 ctgaaatatt catgaacaaa gaccagtttt gtaaaaagtt cattagaatg gaaggccagc
     2461 acatccctcc ccatctgagt gattatcagc ggggctgtag tgtctgggat gctgaaatgt
     2521 cgggaggccg gtgaggagag accgtgtgaa attcaaagat acgctcatcg tgatctttgt
     2581 gactatatca agcaaaacca aatggactaa aaacgaaaaa gaacccatag ctattgtatc
     2641 atctctgccc aagattaacc aaacataacc tgctcatcca tatttttggt tgtagtttta
     2701 acaatctgtt aattttattt aaaatgcact tttttggctt atgagttata ttctgcttat
     2761 ttaattacca gttcgcaagc cttactaaga gagcataagt agctacattt ttttgagaag
     2821 atacctttag ctgcatcgtg agaactttca gttcagagca tcggattgtc acccacatcc
     2881 gaggacgtgg cagtgccctg agggcactgg acggcagacg gtcaccgtgg ggaaggcgtg
     2941 gcctgggact gctgaccgaa cgagacacac ggatacttta tctgaagagt atttccggag
     3001 aggagcaact gaacactaga gggaaaggaa aatgtacttt ttaccttaac agaaaaggaa
     3061 acattcagac tggtgataga agtcagaaga cacattttct cctcagggga actggggacc
     3121 actttcttac ctgtttaaat aaaccaaagc tgactgtgtg aaccaaacat tctcttttcc
     3181 aagcagggtg ctgttcctgg cttctggctt ccacgagaag aaacgcagga aaatgtcttc
     3241 tgtgaaaggt cactccatct gccggcatcc agcgggacgg aggactgtgc tgtgtgttca
     3301 cccaccccag ccaaggggca gtaactaatt attttttaaa ttaagctgtt ctacccagtc
     3361 aaccaagatg cttctgaaaa ttgcctttta ttatagtttc caactattta aaaacaaaat
     3421 aaacgcagtt aacattga
//
LOCUS       XM_032618628            3496 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chondroitin sulfate
            N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript
            variant X2, mRNA.
ACCESSION   XM_032618628
VERSION     XM_032618628.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3496
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3496
                     /gene="CSGALNACT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746869"
     CDS             554..2128
                     /gene="CSGALNACT1"
                     /codon_start=1
                     /product="chondroitin sulfate
                     N-acetylgalactosaminyltransferase 1"
                     /protein_id="XP_032474519.1"
                     /db_xref="GeneID:116746869"
                     /translation="MVRRGLLAWVSRVVVLLVLLCCVVSVLYMLACTPRGDDEQLGLP
                     RANGPTGKDGYQAAMQEWEERHRDYISSLQRQITQLQEELRERSEQLRTAQRQAGDPA
                     GPPGRAQADLLAFLRSQVDRAEVHTGVKQATEYAAVPFDSFTLHKVYQLETGLTRHPE
                     EKPVRKDKRDELVEVIQLAVEALNSPAESSPDQRPYTASDFIEGIYRTEKDKGTLYEL
                     TFRGDHKHEFRRLVLFRPFGPIMKVKKEDLNMAGTLVNVIVPLARRVDKFRQFMQNFR
                     EMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDV
                     GARSWTGRNVLLFFCDVDIYFTSELLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHD
                     SIPPLEKQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYL
                     HSNLIVVRTPVRGLFHLWHEKRCVDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEI
                     EAHLRKQERETRSQKT"
     misc_feature    761..2050
                     /gene="CSGALNACT1"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     Region: CHGN; pfam05679"
                     /db_xref="CDD:461712"
ORIGIN      
        1 aagcctgtta aggccagaaa cagaattcct cctaatttgg tgactcgaca agatcttgac
       61 ttgaggaacg tgtcttttcc cccctcttga gaatccagct caacacaaga gatgctgtta
      121 aacttcacaa taaagtttgc cgagggcatc tgtagcaaac caccggcaca cagacagatt
      181 cctttccatt tcaaggagag aagtcaagat attattaccc agtgaaaaaa tgatgtagtt
      241 tcatcgtaac cttcttttcc tatacttcag gttccctctg gaaggctatg atgggaatga
      301 gcgtgacaac ttggacggtt cccctgactc gttgcctctg cctggaagtt catcctttag
      361 aagtcaggaa cctgctgccc ttggtggtgg actcccagga acaagacgca gtgtagaccg
      421 aaatggatga gagcagctcg gggacccccg gacgtgtgct ccctgtggtc tagtccaggg
      481 acgcccctca caggccgggt ggtctgggat gaacgccgcg gctgctggac gcgtggctga
      541 tccctgagcg aggatggtgc gccgggggct gctcgcctgg gtctcccggg ttgtggtctt
      601 gcttgtgctc ctctgctgcg tcgtctctgt cctctacatg ctagcctgca cgccaagggg
      661 cgatgacgag cagctggggc tgccccgggc caatggcccc acggggaagg acgggtacca
      721 ggcggcgatg caggagtggg aagaacgtca ccgcgactac atcagcagcc tccagaggca
      781 gatcacacag ctccaggagg agctgcggga gaggagcgag cagctcagga ccgcgcagcg
      841 tcaggcggga gaccccgccg gcccccctgg gagggcccag gccgacctgc tggccttcct
      901 gcgctcccag gtggacaggg cggaggtgca cactggcgtc aagcaggcca ccgagtatgc
      961 cgctgtgccc tttgacagct tcaccctgca caaagtgtac cagctggaga cgggcctgac
     1021 ccgccacccc gaggagaagc ccgtgcgcaa ggacaagcgg gatgagctgg tggaggtcat
     1081 ccagctggcc gtggaggccc tgaacagccc ggccgaaagc agccccgacc agcgtcctta
     1141 cacggcctcg gacttcatcg aagggatcta ccgcacagaa aaggataaag gcactttgta
     1201 cgagctcacg ttcagagggg accacaagca cgagttcaga cgccttgtct tgttccgacc
     1261 gtttggcccc atcatgaagg tgaagaagga ggatttgaac atggccggca cgctggtcaa
     1321 tgtcatcgtc ccactggcca ggagggtgga caagttccgg cagttcatgc agaatttcag
     1381 ggagatgtgc atccagcagg atgggagagt tcatctcacc gtcgtttact ttggaaaaga
     1441 agaaatgaat gaggtcaaag gaatacttga aaacacttcc aaagccgcca acttcaggaa
     1501 cttcaccttc atccagctga atggggagtt ctcccgggga aaggggctgg acgtgggcgc
     1561 ccgctcctgg acggggcgta acgtgctgct cttcttctgc gacgtggaca tctacttcac
     1621 ctccgagctc ctcaacacct gcaggctgaa cacgcagcca gggaagaagg tattttatcc
     1681 ggtccttttc agtcagtaca atcctggcat aatatacggc catcatgact cgatccctcc
     1741 cttagaaaag cagctggtca taaagaagga aactgggttc tggagagact tcgggttcgg
     1801 gatgacgtgc cagtaccggt ctgacttcat caacataggt gggttcgacc tggacatcaa
     1861 aggctggggt ggcgaggacg tgcaccttta ccgcaagtac ctgcacagca acctcatcgt
     1921 ggtgcggacg cctgtgcggg gcctcttcca cctctggcat gagaagcgct gcgtagacga
     1981 gctgacacct gagcagtaca agatgtgcat gcagtccaag gccatgaacg aggcgtccca
     2041 cgggcagctg gggatgctgg tcttcaggca cgagatcgag gcccacctcc gcaaacagga
     2101 acgggagaca aggagccaga aaacatgagc tcccaggggc ccatgtgggg aaacggttta
     2161 gttttttcct tttgcaatta ccaaatggat ggctgcaaca aggaaaagat tgccctgaag
     2221 agcaagaaaa gaatttgact gatgaaaaga atttgatgag taaagcaggt gaggggagag
     2281 cctcctgttt ccctctgcct gtttagcttc tgcaacagga gctgaaaccc ctcaacctgg
     2341 cttgcaaaaa cagcccaaac gcacccgtcc ggtgtctgac aaaggcggcc tgatggtgag
     2401 attgtgagcc taatggtgtg tttacagcaa agcaagagct gtttgttttc tatgcttact
     2461 gaaatattca tgaacaaaga ccagttttgt aaaaagttca ttagaatgga aggccagcac
     2521 atccctcccc atctgagtga ttatcagcgg ggctgtagtg tctgggatgc tgaaatgtcg
     2581 ggaggccggt gaggagagac cgtgtgaaat tcaaagatac gctcatcgtg atctttgtga
     2641 ctatatcaag caaaaccaaa tggactaaaa acgaaaaaga acccatagct attgtatcat
     2701 ctctgcccaa gattaaccaa acataacctg ctcatccata tttttggttg tagttttaac
     2761 aatctgttaa ttttatttaa aatgcacttt tttggcttat gagttatatt ctgcttattt
     2821 aattaccagt tcgcaagcct tactaagaga gcataagtag ctacattttt ttgagaagat
     2881 acctttagct gcatcgtgag aactttcagt tcagagcatc ggattgtcac ccacatccga
     2941 ggacgtggca gtgccctgag ggcactggac ggcagacggt caccgtgggg aaggcgtggc
     3001 ctgggactgc tgaccgaacg agacacacgg atactttatc tgaagagtat ttccggagag
     3061 gagcaactga acactagagg gaaaggaaaa tgtacttttt accttaacag aaaaggaaac
     3121 attcagactg gtgatagaag tcagaagaca cattttctcc tcaggggaac tggggaccac
     3181 tttcttacct gtttaaataa accaaagctg actgtgtgaa ccaaacattc tcttttccaa
     3241 gcagggtgct gttcctggct tctggcttcc acgagaagaa acgcaggaaa atgtcttctg
     3301 tgaaaggtca ctccatctgc cggcatccag cgggacggag gactgtgctg tgtgttcacc
     3361 caccccagcc aaggggcagt aactaattat tttttaaatt aagctgttct acccagtcaa
     3421 ccaagatgct tctgaaaatt gccttttatt atagtttcca actatttaaa aacaaaataa
     3481 acgcagttaa cattga
//
LOCUS       XM_032618629            3390 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chondroitin sulfate
            N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript
            variant X3, mRNA.
ACCESSION   XM_032618629
VERSION     XM_032618629.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3390
                     /gene="CSGALNACT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746869"
     CDS             448..2022
                     /gene="CSGALNACT1"
                     /codon_start=1
                     /product="chondroitin sulfate
                     N-acetylgalactosaminyltransferase 1"
                     /protein_id="XP_032474520.1"
                     /db_xref="GeneID:116746869"
                     /translation="MVRRGLLAWVSRVVVLLVLLCCVVSVLYMLACTPRGDDEQLGLP
                     RANGPTGKDGYQAAMQEWEERHRDYISSLQRQITQLQEELRERSEQLRTAQRQAGDPA
                     GPPGRAQADLLAFLRSQVDRAEVHTGVKQATEYAAVPFDSFTLHKVYQLETGLTRHPE
                     EKPVRKDKRDELVEVIQLAVEALNSPAESSPDQRPYTASDFIEGIYRTEKDKGTLYEL
                     TFRGDHKHEFRRLVLFRPFGPIMKVKKEDLNMAGTLVNVIVPLARRVDKFRQFMQNFR
                     EMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDV
                     GARSWTGRNVLLFFCDVDIYFTSELLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHD
                     SIPPLEKQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYL
                     HSNLIVVRTPVRGLFHLWHEKRCVDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEI
                     EAHLRKQERETRSQKT"
     misc_feature    655..1944
                     /gene="CSGALNACT1"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     Region: CHGN; pfam05679"
                     /db_xref="CDD:461712"
ORIGIN      
        1 ctttggttca cacactcttg gcccttttgt gaagcctgtt aaggccagaa acagaattcc
       61 tcctaatttg gattcctttc catttcaagg agagaagtca agatattatt acccagtgaa
      121 aaaatgatgt agtttcatcg taaccttctt ttcctatact tcaggttccc tctggaaggc
      181 tatgatggga atgagcgtga caacttggac ggttcccctg actcgttgcc tctgcctgga
      241 agttcatcct ttagaagtca ggaacctgct gcccttggtg gtggactccc aggaacaaga
      301 cgcagtgtag accgaaatgg atgagagcag ctcggggacc cccggacgtg tgctccctgt
      361 ggtctagtcc agggacgccc ctcacaggcc gggtggtctg ggatgaacgc cgcggctgct
      421 ggacgcgtgg ctgatccctg agcgaggatg gtgcgccggg ggctgctcgc ctgggtctcc
      481 cgggttgtgg tcttgcttgt gctcctctgc tgcgtcgtct ctgtcctcta catgctagcc
      541 tgcacgccaa ggggcgatga cgagcagctg gggctgcccc gggccaatgg ccccacgggg
      601 aaggacgggt accaggcggc gatgcaggag tgggaagaac gtcaccgcga ctacatcagc
      661 agcctccaga ggcagatcac acagctccag gaggagctgc gggagaggag cgagcagctc
      721 aggaccgcgc agcgtcaggc gggagacccc gccggccccc ctgggagggc ccaggccgac
      781 ctgctggcct tcctgcgctc ccaggtggac agggcggagg tgcacactgg cgtcaagcag
      841 gccaccgagt atgccgctgt gccctttgac agcttcaccc tgcacaaagt gtaccagctg
      901 gagacgggcc tgacccgcca ccccgaggag aagcccgtgc gcaaggacaa gcgggatgag
      961 ctggtggagg tcatccagct ggccgtggag gccctgaaca gcccggccga aagcagcccc
     1021 gaccagcgtc cttacacggc ctcggacttc atcgaaggga tctaccgcac agaaaaggat
     1081 aaaggcactt tgtacgagct cacgttcaga ggggaccaca agcacgagtt cagacgcctt
     1141 gtcttgttcc gaccgtttgg ccccatcatg aaggtgaaga aggaggattt gaacatggcc
     1201 ggcacgctgg tcaatgtcat cgtcccactg gccaggaggg tggacaagtt ccggcagttc
     1261 atgcagaatt tcagggagat gtgcatccag caggatggga gagttcatct caccgtcgtt
     1321 tactttggaa aagaagaaat gaatgaggtc aaaggaatac ttgaaaacac ttccaaagcc
     1381 gccaacttca ggaacttcac cttcatccag ctgaatgggg agttctcccg gggaaagggg
     1441 ctggacgtgg gcgcccgctc ctggacgggg cgtaacgtgc tgctcttctt ctgcgacgtg
     1501 gacatctact tcacctccga gctcctcaac acctgcaggc tgaacacgca gccagggaag
     1561 aaggtatttt atccggtcct tttcagtcag tacaatcctg gcataatata cggccatcat
     1621 gactcgatcc ctcccttaga aaagcagctg gtcataaaga aggaaactgg gttctggaga
     1681 gacttcgggt tcgggatgac gtgccagtac cggtctgact tcatcaacat aggtgggttc
     1741 gacctggaca tcaaaggctg gggtggcgag gacgtgcacc tttaccgcaa gtacctgcac
     1801 agcaacctca tcgtggtgcg gacgcctgtg cggggcctct tccacctctg gcatgagaag
     1861 cgctgcgtag acgagctgac acctgagcag tacaagatgt gcatgcagtc caaggccatg
     1921 aacgaggcgt cccacgggca gctggggatg ctggtcttca ggcacgagat cgaggcccac
     1981 ctccgcaaac aggaacggga gacaaggagc cagaaaacat gagctcccag gggcccatgt
     2041 ggggaaacgg tttagttttt tccttttgca attaccaaat ggatggctgc aacaaggaaa
     2101 agattgccct gaagagcaag aaaagaattt gactgatgaa aagaatttga tgagtaaagc
     2161 aggtgagggg agagcctcct gtttccctct gcctgtttag cttctgcaac aggagctgaa
     2221 acccctcaac ctggcttgca aaaacagccc aaacgcaccc gtccggtgtc tgacaaaggc
     2281 ggcctgatgg tgagattgtg agcctaatgg tgtgtttaca gcaaagcaag agctgtttgt
     2341 tttctatgct tactgaaata ttcatgaaca aagaccagtt ttgtaaaaag ttcattagaa
     2401 tggaaggcca gcacatccct ccccatctga gtgattatca gcggggctgt agtgtctggg
     2461 atgctgaaat gtcgggaggc cggtgaggag agaccgtgtg aaattcaaag atacgctcat
     2521 cgtgatcttt gtgactatat caagcaaaac caaatggact aaaaacgaaa aagaacccat
     2581 agctattgta tcatctctgc ccaagattaa ccaaacataa cctgctcatc catatttttg
     2641 gttgtagttt taacaatctg ttaattttat ttaaaatgca cttttttggc ttatgagtta
     2701 tattctgctt atttaattac cagttcgcaa gccttactaa gagagcataa gtagctacat
     2761 ttttttgaga agataccttt agctgcatcg tgagaacttt cagttcagag catcggattg
     2821 tcacccacat ccgaggacgt ggcagtgccc tgagggcact ggacggcaga cggtcaccgt
     2881 ggggaaggcg tggcctggga ctgctgaccg aacgagacac acggatactt tatctgaaga
     2941 gtatttccgg agaggagcaa ctgaacacta gagggaaagg aaaatgtact ttttacctta
     3001 acagaaaagg aaacattcag actggtgata gaagtcagaa gacacatttt ctcctcaggg
     3061 gaactgggga ccactttctt acctgtttaa ataaaccaaa gctgactgtg tgaaccaaac
     3121 attctctttt ccaagcaggg tgctgttcct ggcttctggc ttccacgaga agaaacgcag
     3181 gaaaatgtct tctgtgaaag gtcactccat ctgccggcat ccagcgggac ggaggactgt
     3241 gctgtgtgtt cacccacccc agccaagggg cagtaactaa ttatttttta aattaagctg
     3301 ttctacccag tcaaccaaga tgcttctgaa aattgccttt tattatagtt tccaactatt
     3361 taaaaacaaa ataaacgcag ttaacattga
//
LOCUS       XM_032618630            3382 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chondroitin sulfate
            N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript
            variant X4, mRNA.
ACCESSION   XM_032618630
VERSION     XM_032618630.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3382
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3382
                     /gene="CSGALNACT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746869"
     CDS             440..2014
                     /gene="CSGALNACT1"
                     /codon_start=1
                     /product="chondroitin sulfate
                     N-acetylgalactosaminyltransferase 1"
                     /protein_id="XP_032474521.1"
                     /db_xref="GeneID:116746869"
                     /translation="MVRRGLLAWVSRVVVLLVLLCCVVSVLYMLACTPRGDDEQLGLP
                     RANGPTGKDGYQAAMQEWEERHRDYISSLQRQITQLQEELRERSEQLRTAQRQAGDPA
                     GPPGRAQADLLAFLRSQVDRAEVHTGVKQATEYAAVPFDSFTLHKVYQLETGLTRHPE
                     EKPVRKDKRDELVEVIQLAVEALNSPAESSPDQRPYTASDFIEGIYRTEKDKGTLYEL
                     TFRGDHKHEFRRLVLFRPFGPIMKVKKEDLNMAGTLVNVIVPLARRVDKFRQFMQNFR
                     EMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDV
                     GARSWTGRNVLLFFCDVDIYFTSELLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHD
                     SIPPLEKQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYL
                     HSNLIVVRTPVRGLFHLWHEKRCVDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEI
                     EAHLRKQERETRSQKT"
     misc_feature    647..1936
                     /gene="CSGALNACT1"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     Region: CHGN; pfam05679"
                     /db_xref="CDD:461712"
ORIGIN      
        1 ggcttccgtg cggacgcagc gcccaggccc cagcggccgg cggacaccct gcttcgctgc
       61 gagattcctt tccatttcaa ggagagaagt caagatatta ttacccagtg aaaaaatgat
      121 gtagtttcat cgtaaccttc ttttcctata cttcaggttc cctctggaag gctatgatgg
      181 gaatgagcgt gacaacttgg acggttcccc tgactcgttg cctctgcctg gaagttcatc
      241 ctttagaagt caggaacctg ctgcccttgg tggtggactc ccaggaacaa gacgcagtgt
      301 agaccgaaat ggatgagagc agctcgggga cccccggacg tgtgctccct gtggtctagt
      361 ccagggacgc ccctcacagg ccgggtggtc tgggatgaac gccgcggctg ctggacgcgt
      421 ggctgatccc tgagcgagga tggtgcgccg ggggctgctc gcctgggtct cccgggttgt
      481 ggtcttgctt gtgctcctct gctgcgtcgt ctctgtcctc tacatgctag cctgcacgcc
      541 aaggggcgat gacgagcagc tggggctgcc ccgggccaat ggccccacgg ggaaggacgg
      601 gtaccaggcg gcgatgcagg agtgggaaga acgtcaccgc gactacatca gcagcctcca
      661 gaggcagatc acacagctcc aggaggagct gcgggagagg agcgagcagc tcaggaccgc
      721 gcagcgtcag gcgggagacc ccgccggccc ccctgggagg gcccaggccg acctgctggc
      781 cttcctgcgc tcccaggtgg acagggcgga ggtgcacact ggcgtcaagc aggccaccga
      841 gtatgccgct gtgccctttg acagcttcac cctgcacaaa gtgtaccagc tggagacggg
      901 cctgacccgc caccccgagg agaagcccgt gcgcaaggac aagcgggatg agctggtgga
      961 ggtcatccag ctggccgtgg aggccctgaa cagcccggcc gaaagcagcc ccgaccagcg
     1021 tccttacacg gcctcggact tcatcgaagg gatctaccgc acagaaaagg ataaaggcac
     1081 tttgtacgag ctcacgttca gaggggacca caagcacgag ttcagacgcc ttgtcttgtt
     1141 ccgaccgttt ggccccatca tgaaggtgaa gaaggaggat ttgaacatgg ccggcacgct
     1201 ggtcaatgtc atcgtcccac tggccaggag ggtggacaag ttccggcagt tcatgcagaa
     1261 tttcagggag atgtgcatcc agcaggatgg gagagttcat ctcaccgtcg tttactttgg
     1321 aaaagaagaa atgaatgagg tcaaaggaat acttgaaaac acttccaaag ccgccaactt
     1381 caggaacttc accttcatcc agctgaatgg ggagttctcc cggggaaagg ggctggacgt
     1441 gggcgcccgc tcctggacgg ggcgtaacgt gctgctcttc ttctgcgacg tggacatcta
     1501 cttcacctcc gagctcctca acacctgcag gctgaacacg cagccaggga agaaggtatt
     1561 ttatccggtc cttttcagtc agtacaatcc tggcataata tacggccatc atgactcgat
     1621 ccctccctta gaaaagcagc tggtcataaa gaaggaaact gggttctgga gagacttcgg
     1681 gttcgggatg acgtgccagt accggtctga cttcatcaac ataggtgggt tcgacctgga
     1741 catcaaaggc tggggtggcg aggacgtgca cctttaccgc aagtacctgc acagcaacct
     1801 catcgtggtg cggacgcctg tgcggggcct cttccacctc tggcatgaga agcgctgcgt
     1861 agacgagctg acacctgagc agtacaagat gtgcatgcag tccaaggcca tgaacgaggc
     1921 gtcccacggg cagctgggga tgctggtctt caggcacgag atcgaggccc acctccgcaa
     1981 acaggaacgg gagacaagga gccagaaaac atgagctccc aggggcccat gtggggaaac
     2041 ggtttagttt tttccttttg caattaccaa atggatggct gcaacaagga aaagattgcc
     2101 ctgaagagca agaaaagaat ttgactgatg aaaagaattt gatgagtaaa gcaggtgagg
     2161 ggagagcctc ctgtttccct ctgcctgttt agcttctgca acaggagctg aaacccctca
     2221 acctggcttg caaaaacagc ccaaacgcac ccgtccggtg tctgacaaag gcggcctgat
     2281 ggtgagattg tgagcctaat ggtgtgttta cagcaaagca agagctgttt gttttctatg
     2341 cttactgaaa tattcatgaa caaagaccag ttttgtaaaa agttcattag aatggaaggc
     2401 cagcacatcc ctccccatct gagtgattat cagcggggct gtagtgtctg ggatgctgaa
     2461 atgtcgggag gccggtgagg agagaccgtg tgaaattcaa agatacgctc atcgtgatct
     2521 ttgtgactat atcaagcaaa accaaatgga ctaaaaacga aaaagaaccc atagctattg
     2581 tatcatctct gcccaagatt aaccaaacat aacctgctca tccatatttt tggttgtagt
     2641 tttaacaatc tgttaatttt atttaaaatg cacttttttg gcttatgagt tatattctgc
     2701 ttatttaatt accagttcgc aagccttact aagagagcat aagtagctac atttttttga
     2761 gaagatacct ttagctgcat cgtgagaact ttcagttcag agcatcggat tgtcacccac
     2821 atccgaggac gtggcagtgc cctgagggca ctggacggca gacggtcacc gtggggaagg
     2881 cgtggcctgg gactgctgac cgaacgagac acacggatac tttatctgaa gagtatttcc
     2941 ggagaggagc aactgaacac tagagggaaa ggaaaatgta ctttttacct taacagaaaa
     3001 ggaaacattc agactggtga tagaagtcag aagacacatt ttctcctcag gggaactggg
     3061 gaccactttc ttacctgttt aaataaacca aagctgactg tgtgaaccaa acattctctt
     3121 ttccaagcag ggtgctgttc ctggcttctg gcttccacga gaagaaacgc aggaaaatgt
     3181 cttctgtgaa aggtcactcc atctgccggc atccagcggg acggaggact gtgctgtgtg
     3241 ttcacccacc ccagccaagg ggcagtaact aattattttt taaattaagc tgttctaccc
     3301 agtcaaccaa gatgcttctg aaaattgcct tttattatag tttccaacta tttaaaaaca
     3361 aaataaacgc agttaacatt ga
//
LOCUS       XM_032618631            3390 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chondroitin sulfate
            N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript
            variant X5, mRNA.
ACCESSION   XM_032618631
VERSION     XM_032618631.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3390
                     /gene="CSGALNACT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 20 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746869"
     CDS             448..2022
                     /gene="CSGALNACT1"
                     /codon_start=1
                     /product="chondroitin sulfate
                     N-acetylgalactosaminyltransferase 1"
                     /protein_id="XP_032474522.1"
                     /db_xref="GeneID:116746869"
                     /translation="MVRRGLLAWVSRVVVLLVLLCCVVSVLYMLACTPRGDDEQLGLP
                     RANGPTGKDGYQAAMQEWEERHRDYISSLQRQITQLQEELRERSEQLRTAQRQAGDPA
                     GPPGRAQADLLAFLRSQVDRAEVHTGVKQATEYAAVPFDSFTLHKVYQLETGLTRHPE
                     EKPVRKDKRDELVEVIQLAVEALNSPAESSPDQRPYTASDFIEGIYRTEKDKGTLYEL
                     TFRGDHKHEFRRLVLFRPFGPIMKVKKEDLNMAGTLVNVIVPLARRVDKFRQFMQNFR
                     EMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDV
                     GARSWTGRNVLLFFCDVDIYFTSELLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHD
                     SIPPLEKQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYL
                     HSNLIVVRTPVRGLFHLWHEKRCVDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEI
                     EAHLRKQERETRSQKT"
     misc_feature    655..1944
                     /gene="CSGALNACT1"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     Region: CHGN; pfam05679"
                     /db_xref="CDD:461712"
ORIGIN      
        1 gagcccgcgg cgccgcgcag gaggagccgg cggcggcggg agcggcggga gccggccggc
       61 agcgcctcgc gattcctttc catttcaagg agagaagtca agatattatt acccagtgaa
      121 aaaatgatgt agtttcatcg taaccttctt ttcctatact tcaggttccc tctggaaggc
      181 tatgatggga atgagcgtga caacttggac ggttcccctg actcgttgcc tctgcctgga
      241 agttcatcct ttagaagtca ggaacctgct gcccttggtg gtggactccc aggaacaaga
      301 cgcagtgtag accgaaatgg atgagagcag ctcggggacc cccggacgtg tgctccctgt
      361 ggtctagtcc agggacgccc ctcacaggcc gggtggtctg ggatgaacgc cgcggctgct
      421 ggacgcgtgg ctgatccctg agcgaggatg gtgcgccggg ggctgctcgc ctgggtctcc
      481 cgggttgtgg tcttgcttgt gctcctctgc tgcgtcgtct ctgtcctcta catgctagcc
      541 tgcacgccaa ggggcgatga cgagcagctg gggctgcccc gggccaatgg ccccacgggg
      601 aaggacgggt accaggcggc gatgcaggag tgggaagaac gtcaccgcga ctacatcagc
      661 agcctccaga ggcagatcac acagctccag gaggagctgc gggagaggag cgagcagctc
      721 aggaccgcgc agcgtcaggc gggagacccc gccggccccc ctgggagggc ccaggccgac
      781 ctgctggcct tcctgcgctc ccaggtggac agggcggagg tgcacactgg cgtcaagcag
      841 gccaccgagt atgccgctgt gccctttgac agcttcaccc tgcacaaagt gtaccagctg
      901 gagacgggcc tgacccgcca ccccgaggag aagcccgtgc gcaaggacaa gcgggatgag
      961 ctggtggagg tcatccagct ggccgtggag gccctgaaca gcccggccga aagcagcccc
     1021 gaccagcgtc cttacacggc ctcggacttc atcgaaggga tctaccgcac agaaaaggat
     1081 aaaggcactt tgtacgagct cacgttcaga ggggaccaca agcacgagtt cagacgcctt
     1141 gtcttgttcc gaccgtttgg ccccatcatg aaggtgaaga aggaggattt gaacatggcc
     1201 ggcacgctgg tcaatgtcat cgtcccactg gccaggaggg tggacaagtt ccggcagttc
     1261 atgcagaatt tcagggagat gtgcatccag caggatggga gagttcatct caccgtcgtt
     1321 tactttggaa aagaagaaat gaatgaggtc aaaggaatac ttgaaaacac ttccaaagcc
     1381 gccaacttca ggaacttcac cttcatccag ctgaatgggg agttctcccg gggaaagggg
     1441 ctggacgtgg gcgcccgctc ctggacgggg cgtaacgtgc tgctcttctt ctgcgacgtg
     1501 gacatctact tcacctccga gctcctcaac acctgcaggc tgaacacgca gccagggaag
     1561 aaggtatttt atccggtcct tttcagtcag tacaatcctg gcataatata cggccatcat
     1621 gactcgatcc ctcccttaga aaagcagctg gtcataaaga aggaaactgg gttctggaga
     1681 gacttcgggt tcgggatgac gtgccagtac cggtctgact tcatcaacat aggtgggttc
     1741 gacctggaca tcaaaggctg gggtggcgag gacgtgcacc tttaccgcaa gtacctgcac
     1801 agcaacctca tcgtggtgcg gacgcctgtg cggggcctct tccacctctg gcatgagaag
     1861 cgctgcgtag acgagctgac acctgagcag tacaagatgt gcatgcagtc caaggccatg
     1921 aacgaggcgt cccacgggca gctggggatg ctggtcttca ggcacgagat cgaggcccac
     1981 ctccgcaaac aggaacggga gacaaggagc cagaaaacat gagctcccag gggcccatgt
     2041 ggggaaacgg tttagttttt tccttttgca attaccaaat ggatggctgc aacaaggaaa
     2101 agattgccct gaagagcaag aaaagaattt gactgatgaa aagaatttga tgagtaaagc
     2161 aggtgagggg agagcctcct gtttccctct gcctgtttag cttctgcaac aggagctgaa
     2221 acccctcaac ctggcttgca aaaacagccc aaacgcaccc gtccggtgtc tgacaaaggc
     2281 ggcctgatgg tgagattgtg agcctaatgg tgtgtttaca gcaaagcaag agctgtttgt
     2341 tttctatgct tactgaaata ttcatgaaca aagaccagtt ttgtaaaaag ttcattagaa
     2401 tggaaggcca gcacatccct ccccatctga gtgattatca gcggggctgt agtgtctggg
     2461 atgctgaaat gtcgggaggc cggtgaggag agaccgtgtg aaattcaaag atacgctcat
     2521 cgtgatcttt gtgactatat caagcaaaac caaatggact aaaaacgaaa aagaacccat
     2581 agctattgta tcatctctgc ccaagattaa ccaaacataa cctgctcatc catatttttg
     2641 gttgtagttt taacaatctg ttaattttat ttaaaatgca cttttttggc ttatgagtta
     2701 tattctgctt atttaattac cagttcgcaa gccttactaa gagagcataa gtagctacat
     2761 ttttttgaga agataccttt agctgcatcg tgagaacttt cagttcagag catcggattg
     2821 tcacccacat ccgaggacgt ggcagtgccc tgagggcact ggacggcaga cggtcaccgt
     2881 ggggaaggcg tggcctggga ctgctgaccg aacgagacac acggatactt tatctgaaga
     2941 gtatttccgg agaggagcaa ctgaacacta gagggaaagg aaaatgtact ttttacctta
     3001 acagaaaagg aaacattcag actggtgata gaagtcagaa gacacatttt ctcctcaggg
     3061 gaactgggga ccactttctt acctgtttaa ataaaccaaa gctgactgtg tgaaccaaac
     3121 attctctttt ccaagcaggg tgctgttcct ggcttctggc ttccacgaga agaaacgcag
     3181 gaaaatgtct tctgtgaaag gtcactccat ctgccggcat ccagcgggac ggaggactgt
     3241 gctgtgtgtt cacccacccc agccaagggg cagtaactaa ttatttttta aattaagctg
     3301 ttctacccag tcaaccaaga tgcttctgaa aattgccttt tattatagtt tccaactatt
     3361 taaaaacaaa ataaacgcag ttaacattga
//
LOCUS       XM_032618632            3416 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chondroitin sulfate
            N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript
            variant X6, mRNA.
ACCESSION   XM_032618632
VERSION     XM_032618632.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3416
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3416
                     /gene="CSGALNACT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746869"
     CDS             474..2048
                     /gene="CSGALNACT1"
                     /codon_start=1
                     /product="chondroitin sulfate
                     N-acetylgalactosaminyltransferase 1"
                     /protein_id="XP_032474523.1"
                     /db_xref="GeneID:116746869"
                     /translation="MVRRGLLAWVSRVVVLLVLLCCVVSVLYMLACTPRGDDEQLGLP
                     RANGPTGKDGYQAAMQEWEERHRDYISSLQRQITQLQEELRERSEQLRTAQRQAGDPA
                     GPPGRAQADLLAFLRSQVDRAEVHTGVKQATEYAAVPFDSFTLHKVYQLETGLTRHPE
                     EKPVRKDKRDELVEVIQLAVEALNSPAESSPDQRPYTASDFIEGIYRTEKDKGTLYEL
                     TFRGDHKHEFRRLVLFRPFGPIMKVKKEDLNMAGTLVNVIVPLARRVDKFRQFMQNFR
                     EMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDV
                     GARSWTGRNVLLFFCDVDIYFTSELLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHD
                     SIPPLEKQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYL
                     HSNLIVVRTPVRGLFHLWHEKRCVDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEI
                     EAHLRKQERETRSQKT"
     misc_feature    681..1970
                     /gene="CSGALNACT1"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     Region: CHGN; pfam05679"
                     /db_xref="CDD:461712"
ORIGIN      
        1 attcgacttg acacccacag ggatgttgta aagaggatga taatcagaaa catgggttaa
       61 ctttctggat gaatcgagct cctgaaagat cagcctgatt cctttccatt tcaaggagag
      121 aagtcaagat attattaccc agtgaaaaaa tgatgtagtt tcatcgtaac cttcttttcc
      181 tatacttcag gttccctctg gaaggctatg atgggaatga gcgtgacaac ttggacggtt
      241 cccctgactc gttgcctctg cctggaagtt catcctttag aagtcaggaa cctgctgccc
      301 ttggtggtgg actcccagga acaagacgca gtgtagaccg aaatggatga gagcagctcg
      361 gggacccccg gacgtgtgct ccctgtggtc tagtccaggg acgcccctca caggccgggt
      421 ggtctgggat gaacgccgcg gctgctggac gcgtggctga tccctgagcg aggatggtgc
      481 gccgggggct gctcgcctgg gtctcccggg ttgtggtctt gcttgtgctc ctctgctgcg
      541 tcgtctctgt cctctacatg ctagcctgca cgccaagggg cgatgacgag cagctggggc
      601 tgccccgggc caatggcccc acggggaagg acgggtacca ggcggcgatg caggagtggg
      661 aagaacgtca ccgcgactac atcagcagcc tccagaggca gatcacacag ctccaggagg
      721 agctgcggga gaggagcgag cagctcagga ccgcgcagcg tcaggcggga gaccccgccg
      781 gcccccctgg gagggcccag gccgacctgc tggccttcct gcgctcccag gtggacaggg
      841 cggaggtgca cactggcgtc aagcaggcca ccgagtatgc cgctgtgccc tttgacagct
      901 tcaccctgca caaagtgtac cagctggaga cgggcctgac ccgccacccc gaggagaagc
      961 ccgtgcgcaa ggacaagcgg gatgagctgg tggaggtcat ccagctggcc gtggaggccc
     1021 tgaacagccc ggccgaaagc agccccgacc agcgtcctta cacggcctcg gacttcatcg
     1081 aagggatcta ccgcacagaa aaggataaag gcactttgta cgagctcacg ttcagagggg
     1141 accacaagca cgagttcaga cgccttgtct tgttccgacc gtttggcccc atcatgaagg
     1201 tgaagaagga ggatttgaac atggccggca cgctggtcaa tgtcatcgtc ccactggcca
     1261 ggagggtgga caagttccgg cagttcatgc agaatttcag ggagatgtgc atccagcagg
     1321 atgggagagt tcatctcacc gtcgtttact ttggaaaaga agaaatgaat gaggtcaaag
     1381 gaatacttga aaacacttcc aaagccgcca acttcaggaa cttcaccttc atccagctga
     1441 atggggagtt ctcccgggga aaggggctgg acgtgggcgc ccgctcctgg acggggcgta
     1501 acgtgctgct cttcttctgc gacgtggaca tctacttcac ctccgagctc ctcaacacct
     1561 gcaggctgaa cacgcagcca gggaagaagg tattttatcc ggtccttttc agtcagtaca
     1621 atcctggcat aatatacggc catcatgact cgatccctcc cttagaaaag cagctggtca
     1681 taaagaagga aactgggttc tggagagact tcgggttcgg gatgacgtgc cagtaccggt
     1741 ctgacttcat caacataggt gggttcgacc tggacatcaa aggctggggt ggcgaggacg
     1801 tgcaccttta ccgcaagtac ctgcacagca acctcatcgt ggtgcggacg cctgtgcggg
     1861 gcctcttcca cctctggcat gagaagcgct gcgtagacga gctgacacct gagcagtaca
     1921 agatgtgcat gcagtccaag gccatgaacg aggcgtccca cgggcagctg gggatgctgg
     1981 tcttcaggca cgagatcgag gcccacctcc gcaaacagga acgggagaca aggagccaga
     2041 aaacatgagc tcccaggggc ccatgtgggg aaacggttta gttttttcct tttgcaatta
     2101 ccaaatggat ggctgcaaca aggaaaagat tgccctgaag agcaagaaaa gaatttgact
     2161 gatgaaaaga atttgatgag taaagcaggt gaggggagag cctcctgttt ccctctgcct
     2221 gtttagcttc tgcaacagga gctgaaaccc ctcaacctgg cttgcaaaaa cagcccaaac
     2281 gcacccgtcc ggtgtctgac aaaggcggcc tgatggtgag attgtgagcc taatggtgtg
     2341 tttacagcaa agcaagagct gtttgttttc tatgcttact gaaatattca tgaacaaaga
     2401 ccagttttgt aaaaagttca ttagaatgga aggccagcac atccctcccc atctgagtga
     2461 ttatcagcgg ggctgtagtg tctgggatgc tgaaatgtcg ggaggccggt gaggagagac
     2521 cgtgtgaaat tcaaagatac gctcatcgtg atctttgtga ctatatcaag caaaaccaaa
     2581 tggactaaaa acgaaaaaga acccatagct attgtatcat ctctgcccaa gattaaccaa
     2641 acataacctg ctcatccata tttttggttg tagttttaac aatctgttaa ttttatttaa
     2701 aatgcacttt tttggcttat gagttatatt ctgcttattt aattaccagt tcgcaagcct
     2761 tactaagaga gcataagtag ctacattttt ttgagaagat acctttagct gcatcgtgag
     2821 aactttcagt tcagagcatc ggattgtcac ccacatccga ggacgtggca gtgccctgag
     2881 ggcactggac ggcagacggt caccgtgggg aaggcgtggc ctgggactgc tgaccgaacg
     2941 agacacacgg atactttatc tgaagagtat ttccggagag gagcaactga acactagagg
     3001 gaaaggaaaa tgtacttttt accttaacag aaaaggaaac attcagactg gtgatagaag
     3061 tcagaagaca cattttctcc tcaggggaac tggggaccac tttcttacct gtttaaataa
     3121 accaaagctg actgtgtgaa ccaaacattc tcttttccaa gcagggtgct gttcctggct
     3181 tctggcttcc acgagaagaa acgcaggaaa atgtcttctg tgaaaggtca ctccatctgc
     3241 cggcatccag cgggacggag gactgtgctg tgtgttcacc caccccagcc aaggggcagt
     3301 aactaattat tttttaaatt aagctgttct acccagtcaa ccaagatgct tctgaaaatt
     3361 gccttttatt atagtttcca actatttaaa aacaaaataa acgcagttaa cattga
//
LOCUS       XM_032618633            3510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chondroitin sulfate
            N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript
            variant X7, mRNA.
ACCESSION   XM_032618633
VERSION     XM_032618633.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3510
                     /gene="CSGALNACT1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746869"
     CDS             568..2142
                     /gene="CSGALNACT1"
                     /codon_start=1
                     /product="chondroitin sulfate
                     N-acetylgalactosaminyltransferase 1"
                     /protein_id="XP_032474524.1"
                     /db_xref="GeneID:116746869"
                     /translation="MVRRGLLAWVSRVVVLLVLLCCVVSVLYMLACTPRGDDEQLGLP
                     RANGPTGKDGYQAAMQEWEERHRDYISSLQRQITQLQEELRERSEQLRTAQRQAGDPA
                     GPPGRAQADLLAFLRSQVDRAEVHTGVKQATEYAAVPFDSFTLHKVYQLETGLTRHPE
                     EKPVRKDKRDELVEVIQLAVEALNSPAESSPDQRPYTASDFIEGIYRTEKDKGTLYEL
                     TFRGDHKHEFRRLVLFRPFGPIMKVKKEDLNMAGTLVNVIVPLARRVDKFRQFMQNFR
                     EMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDV
                     GARSWTGRNVLLFFCDVDIYFTSELLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHD
                     SIPPLEKQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYL
                     HSNLIVVRTPVRGLFHLWHEKRCVDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEI
                     EAHLRKQERETRSQKT"
     misc_feature    775..2064
                     /gene="CSGALNACT1"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     Region: CHGN; pfam05679"
                     /db_xref="CDD:461712"
ORIGIN      
        1 ctttggttca cacactcttg gcccttttgt gaagcctgtt aaggccagaa acagaattcc
       61 tcctaatttg gataaagttt gccgagggca tctgtagcaa accaccggca cacagacaga
      121 ttcctttcca tttcaaggag agaagtcaag atattattac ccagtgaaaa aatgatgtag
      181 tttcatcgta accttctttt cctatacttc aggatactgc ctggcgaaga ggagacactc
      241 cggagatgtg tggattggga gcaaaggcac gctctaactt ataggttccc tctggaaggc
      301 tatgatggga atgagcgtga caacttggac ggttcccctg actcgttgcc tctgcctgga
      361 agttcatcct ttagaagtca ggaacctgct gcccttggtg gtggactccc aggaacaaga
      421 cgcagtgtag accgaaatgg atgagagcag ctcggggacc cccggacgtg tgctccctgt
      481 ggtctagtcc agggacgccc ctcacaggcc gggtggtctg ggatgaacgc cgcggctgct
      541 ggacgcgtgg ctgatccctg agcgaggatg gtgcgccggg ggctgctcgc ctgggtctcc
      601 cgggttgtgg tcttgcttgt gctcctctgc tgcgtcgtct ctgtcctcta catgctagcc
      661 tgcacgccaa ggggcgatga cgagcagctg gggctgcccc gggccaatgg ccccacgggg
      721 aaggacgggt accaggcggc gatgcaggag tgggaagaac gtcaccgcga ctacatcagc
      781 agcctccaga ggcagatcac acagctccag gaggagctgc gggagaggag cgagcagctc
      841 aggaccgcgc agcgtcaggc gggagacccc gccggccccc ctgggagggc ccaggccgac
      901 ctgctggcct tcctgcgctc ccaggtggac agggcggagg tgcacactgg cgtcaagcag
      961 gccaccgagt atgccgctgt gccctttgac agcttcaccc tgcacaaagt gtaccagctg
     1021 gagacgggcc tgacccgcca ccccgaggag aagcccgtgc gcaaggacaa gcgggatgag
     1081 ctggtggagg tcatccagct ggccgtggag gccctgaaca gcccggccga aagcagcccc
     1141 gaccagcgtc cttacacggc ctcggacttc atcgaaggga tctaccgcac agaaaaggat
     1201 aaaggcactt tgtacgagct cacgttcaga ggggaccaca agcacgagtt cagacgcctt
     1261 gtcttgttcc gaccgtttgg ccccatcatg aaggtgaaga aggaggattt gaacatggcc
     1321 ggcacgctgg tcaatgtcat cgtcccactg gccaggaggg tggacaagtt ccggcagttc
     1381 atgcagaatt tcagggagat gtgcatccag caggatggga gagttcatct caccgtcgtt
     1441 tactttggaa aagaagaaat gaatgaggtc aaaggaatac ttgaaaacac ttccaaagcc
     1501 gccaacttca ggaacttcac cttcatccag ctgaatgggg agttctcccg gggaaagggg
     1561 ctggacgtgg gcgcccgctc ctggacgggg cgtaacgtgc tgctcttctt ctgcgacgtg
     1621 gacatctact tcacctccga gctcctcaac acctgcaggc tgaacacgca gccagggaag
     1681 aaggtatttt atccggtcct tttcagtcag tacaatcctg gcataatata cggccatcat
     1741 gactcgatcc ctcccttaga aaagcagctg gtcataaaga aggaaactgg gttctggaga
     1801 gacttcgggt tcgggatgac gtgccagtac cggtctgact tcatcaacat aggtgggttc
     1861 gacctggaca tcaaaggctg gggtggcgag gacgtgcacc tttaccgcaa gtacctgcac
     1921 agcaacctca tcgtggtgcg gacgcctgtg cggggcctct tccacctctg gcatgagaag
     1981 cgctgcgtag acgagctgac acctgagcag tacaagatgt gcatgcagtc caaggccatg
     2041 aacgaggcgt cccacgggca gctggggatg ctggtcttca ggcacgagat cgaggcccac
     2101 ctccgcaaac aggaacggga gacaaggagc cagaaaacat gagctcccag gggcccatgt
     2161 ggggaaacgg tttagttttt tccttttgca attaccaaat ggatggctgc aacaaggaaa
     2221 agattgccct gaagagcaag aaaagaattt gactgatgaa aagaatttga tgagtaaagc
     2281 aggtgagggg agagcctcct gtttccctct gcctgtttag cttctgcaac aggagctgaa
     2341 acccctcaac ctggcttgca aaaacagccc aaacgcaccc gtccggtgtc tgacaaaggc
     2401 ggcctgatgg tgagattgtg agcctaatgg tgtgtttaca gcaaagcaag agctgtttgt
     2461 tttctatgct tactgaaata ttcatgaaca aagaccagtt ttgtaaaaag ttcattagaa
     2521 tggaaggcca gcacatccct ccccatctga gtgattatca gcggggctgt agtgtctggg
     2581 atgctgaaat gtcgggaggc cggtgaggag agaccgtgtg aaattcaaag atacgctcat
     2641 cgtgatcttt gtgactatat caagcaaaac caaatggact aaaaacgaaa aagaacccat
     2701 agctattgta tcatctctgc ccaagattaa ccaaacataa cctgctcatc catatttttg
     2761 gttgtagttt taacaatctg ttaattttat ttaaaatgca cttttttggc ttatgagtta
     2821 tattctgctt atttaattac cagttcgcaa gccttactaa gagagcataa gtagctacat
     2881 ttttttgaga agataccttt agctgcatcg tgagaacttt cagttcagag catcggattg
     2941 tcacccacat ccgaggacgt ggcagtgccc tgagggcact ggacggcaga cggtcaccgt
     3001 ggggaaggcg tggcctggga ctgctgaccg aacgagacac acggatactt tatctgaaga
     3061 gtatttccgg agaggagcaa ctgaacacta gagggaaagg aaaatgtact ttttacctta
     3121 acagaaaagg aaacattcag actggtgata gaagtcagaa gacacatttt ctcctcaggg
     3181 gaactgggga ccactttctt acctgtttaa ataaaccaaa gctgactgtg tgaaccaaac
     3241 attctctttt ccaagcaggg tgctgttcct ggcttctggc ttccacgaga agaaacgcag
     3301 gaaaatgtct tctgtgaaag gtcactccat ctgccggcat ccagcgggac ggaggactgt
     3361 gctgtgtgtt cacccacccc agccaagggg cagtaactaa ttatttttta aattaagctg
     3421 ttctacccag tcaaccaaga tgcttctgaa aattgccttt tattatagtt tccaactatt
     3481 taaaaacaaa ataaacgcag ttaacattga
//
LOCUS       XM_032618634            1135 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dynactin subunit 6 (DCTN6), mRNA.
ACCESSION   XM_032618634
VERSION     XM_032618634.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1135
                     /gene="DCTN6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 3 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746870"
     CDS             88..660
                     /gene="DCTN6"
                     /codon_start=1
                     /product="dynactin subunit 6"
                     /protein_id="XP_032474525.1"
                     /db_xref="GeneID:116746870"
                     /translation="MAEKTQKSVKIAPGAVVCVESEIKGDVTIGPRTVIHPKARIIAE
                     AGPIVIGEGNLIEEQALIINAHPENITPDAEDPEPKPMIIGTNNVFEVGCYSQAMKIG
                     DNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQ
                     TLQLDFLMKILPNYHHLKKTMKGSSTPVKN"
     misc_feature    115..624
                     /gene="DCTN6"
                     /note="Dynactin 6 (or subunit p27): Dynactin is a major
                     component of the activator complex that stimulates
                     dynein-mediated vesicle transport. Dynactin is a
                     heterocomplex of at least eight subunits, including a
                     150,000-MW protein called Glued, the actin-capping...;
                     Region: LbH_Dynactin_6; cd04646"
                     /db_xref="CDD:100052"
ORIGIN      
        1 gatcctgcca ggctctgcaa tcgttcgtag agatcgtcgc tttgcccagg cggttgtgta
       61 gatccaactg gaggtcaggc ccaaaccatg gcggaaaaga ctcaaaaaag tgtgaagatt
      121 gcacctggag cagttgtgtg tgtagagagt gaaatcaagg gtgatgtaac tataggaccc
      181 aggacagtga tccaccctaa agcacgaatc atcgcggaag ccgggcccat agtgatcggc
      241 gaaggtaacc taatagaaga acaggcgctc atcataaatg ctcaccctga aaatatcact
      301 cctgatgctg aagatccaga gcccaaacct atgatcattg gcaccaataa tgtgtttgaa
      361 gttggctgtt attcccaagc catgaaaata ggagataata atgttattga atcaaaagca
      421 tatgtaggca gaaacgtaat attgacaagt ggttgcatca tcggggcctg ctgcaacctg
      481 aacacgtttg aagtcatccc tgagaacaca gtgatttatg gtgcagactg ccttcgtcgg
      541 gtgcagactg agcgaccaca gccccagaca ctacagctgg atttcctgat gaaaatcttg
      601 ccaaactacc atcacctaaa gaagactatg aaaggaagct caactccagt taagaactaa
      661 gaacaatata tgacatcaag ataatatttg tctttgacca ctgtcttttg aaagagccac
      721 agtgtttatg cactcttagc agtctgcaga ataatgtgtg ttgactttat cttgtaaaat
      781 tgagttagag aggaaagaaa tggggtttca ttgtaactgt cctctataat ttgtataaaa
      841 tgtattattt tctgatatcc ttgtcccatt tctgataatt tacggatttc ttattttgtg
      901 ttgttttgtt atgtaaaatg ttggccatga attttagtta tataaaagac tacccatgat
      961 aagaaagaac atattgttat gtatttatat tctagcattt actaaactaa ataaaaatgt
     1021 tgatgacagg actttcagtg aatatacttt aatcaatttt tctacttgca tcaactctcc
     1081 caaaatagct cttttaattt ttattgtgta ctagctatat attaaagcta atgtg
//
LOCUS       XM_032618636            3140 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitor of growth family member 2
            (ING2), mRNA.
ACCESSION   XM_032618636
VERSION     XM_032618636.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3140
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3140
                     /gene="ING2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746871"
     CDS             2147..2989
                     /gene="ING2"
                     /codon_start=1
                     /product="inhibitor of growth protein 2"
                     /protein_id="XP_032474527.1"
                     /db_xref="GeneID:116746871"
                     /translation="MLGQQQQQLYSSAALLTGERSRLLTCYVQDYLECVESLPHDMQR
                     NVSVLRELDNKYQETLKEIDDVYEKYKKEDDSNQKKRLQQHLQRALINSQELGDEKIQ
                     IVTQMLELVENRARQMELHSQCFQDPAESERASDKAKMDSSQPERSSRRPRRQRTSES
                     RDLCHMTNGIEDCDDQPPKEKKSKSAKKKKRSKAKQEREASPVEFAIDPNEPTYCLCN
                     QVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDNEKTMDKSTEKTKKE
                     RRSR"
     misc_feature    2240..2503
                     /gene="ING2"
                     /note="Inhibitor of growth (ING) domain of inhibitor of
                     growth protein 2 (ING2); Region: ING_ING2; cd16861"
                     /db_xref="CDD:341094"
     misc_feature    order(2249..2251,2258..2266,2273..2275,2282..2284,
                     2291..2293,2303..2305,2324..2326,2333..2338,2393..2398,
                     2405..2407,2414..2419,2426..2428,2435..2440,2447..2449,
                     2456..2458,2465..2470,2477..2482,2486..2491,2498..2503)
                     /gene="ING2"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:341094"
     misc_feature    2783..2929
                     /gene="ING2"
                     /note="PHD finger found in inhibitor of growth protein 2
                     (ING2); Region: PHD_ING2; cd15683"
                     /db_xref="CDD:277153"
     misc_feature    order(2786..2788,2807..2833,2852..2857,2864..2866,
                     2888..2893,2897..2899)
                     /gene="ING2"
                     /note="H3K4me3 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277153"
ORIGIN      
        1 aaactagctg atttaaatct atgagtaaac aaaaatagta gggtttaagt aaaatgtgat
       61 taaaattcaa ttcttaacag tgactttttt gacaagacct ggctgcttaa tctgatttaa
      121 agaatgacaa gaaaatccct agacggttct cagaaataca agacactgga ctgcctgggt
      181 tgacttaata atattcaagt ggtcaaaacc tccaagtgtc acaggataat aatacaagac
      241 aatctttgag tcctgagcaa tattatcttg ttcccaagac tcaaatttcc aatagtgctt
      301 tgtttcggtt tgaaatttaa aatatcctct agatcaaggt ctagatttct ctttccctgt
      361 cagtggttac gtactattaa cagctgtttc aaaactgccc taaataggtt atcatacagg
      421 tgccccaccg ctgcaaacca attggatata agaagaaatc ccaatttatc gccccctcac
      481 gttttctttt taactcaaat gtactactca caatagtgct tgtttacata ggcattccgt
      541 taaaattctc cgcgtattcg ttctctttac acccatttct ttgaaaaata cacgctgtta
      601 tatacactga gtccatctgg aattaaaatc aactcctctg cttggcattt catttaaccc
      661 cagataggaa ttaaaccctg tcggccggtc acgtagatga ggacgtgggc ctgatttcgg
      721 attcggtctg tcctcgcgtc tccatcaccc ctggaccccg gcccccagtg gttttcagtc
      781 ttacgtagat gttaagatgg tggtgcctct cacgccgcca ggaagccctt gcctacgttt
      841 aatgtttaaa cgttctgatc cccaggggga aaactttttt ttttttttta aaggttgtct
      901 gtcggacaaa caggtatggg gcagagtgag cctaaactaa acgcgattcc tcaggagccc
      961 tagggtggac aaaacctgca cgtcctggtg cggcggaaga cccccgcgtc tgcggaaggg
     1021 agagagctcg cagaagccag gagggagatt cgaaaagcgg acggactaag ggagaaagaa
     1081 acgcaggggg ccgcgagggc accgcctacc tcggcgatca gccccggtgc tccgggagcc
     1141 cgaaggccgc ggctggagga agacacagcc agagggcggt gccggcccgg tgggcacaca
     1201 gccgccgcgc atgcccggag ccgcgctcgc ctcacgcccg tcgcatagtc cccgcaggac
     1261 tccctccggg tcgctgcgta aggtggccgc ctgctgctcc ttttaaggct cgcgaggggc
     1321 cgcgctatat ccatctgatg gggaagaagt cggtaacaac gggccgaggg agctgggcca
     1381 agcctccccc tccctgtggg aaggacggaa ggaaggggtc agccacctgc cctctcaagt
     1441 cccattcaga cattgagcaa agaggcggac ccgacagtgc ttccccttta agagggggcg
     1501 gggcgcagcc tacagtttgg ccgctctccg caccctaccc ccgggccaag agttgacaga
     1561 ccaatcgccc gggtggcgga gggaaggcgg gagaatgcga acccttcggc tgggcggtag
     1621 gggcgggccc ccggccttat taggagggag tcctgcgcag gcgcagaggc ggccgcagcc
     1681 tgaggggcgg gggcggtcca gtgagagact ctccgtcagg cactgagggt gattgggagg
     1741 aaagaggcca gcgagaggct tgtcatgggg atccgaggta cgagacggca ttggtagcat
     1801 ctggtgactc cgagggggac aggaagtgtc aacgcccggg accccggcgc cagctccgct
     1861 ggggggatcc ccgctgctct agtcctgagg agggaggggg aaaaggaggg agccccgatc
     1921 tcgccccgcc cctgggcttg ttaccgcggg ggcggggagt gagggctcct tttgcgggga
     1981 gtagagatcg ggggactcgg ctgtgccctc tcgagcggct gccggtgtcc ccgcggcgcc
     2041 gggctgacga gcagaggagc cgcggcggcc gtggctgttg catgtgtggc tgctggatgc
     2101 ggaggcggcg gcggcggcgg cggcgaggag cagcagcggc ggcaggatgt tagggcagca
     2161 gcaacagcaa ctctactcgt cggccgcgct cctgaccggg gagcggagcc ggctcctcac
     2221 ctgctatgtg caggactacc tcgagtgcgt ggagtcgttg ccccacgaca tgcagaggaa
     2281 cgtgtccgtg ctgcgagagc tggacaacaa atatcaagaa acattaaagg aaattgatga
     2341 tgtctatgaa aaatataaga aagaggatga ttcaaaccag aaaaaacgcc tccagcagca
     2401 tctccagaga gcattaatca atagtcaaga attgggagat gaaaaaattc agattgtcac
     2461 acagatgctc gaattggtgg aaaatcgggc aaggcaaatg gagctacatt cacagtgttt
     2521 tcaagatcct gctgaaagtg agcgagcctc agataaagca aagatggatt ccagccaacc
     2581 agaacgatct tcgagaagac cccgccgaca gcgaaccagt gaaagccgtg atctgtgtca
     2641 catgacgaat gggattgaag actgtgatga tcagccacct aaagaaaaga aatccaagtc
     2701 agccaagaaa aagaaacgtt ccaaggccaa gcaggaaagg gaagcttcgc ctgttgagtt
     2761 tgcaatagat cccaatgaac ctacatattg tttatgtaac caagtgtctt atggggaaat
     2821 gatcggatgt gacaatgaac agtgtccaat tgaatggttt cacttttcat gtgtttcact
     2881 tacctataaa ccaaagggga aatggtattg cccaaagtgc aggggagata atgagaaaac
     2941 gatggacaaa agtactgaaa agacaaagaa ggagagaaga tcgaggtagt aaaggccatc
     3001 tgcattttaa agggttattt gtcttttata taattctttc agaatttact ttcagaaaat
     3061 gttttagggt aaatgcataa gactatgcaa taatttttaa tcattagtat taatggtgta
     3121 ttaaaagttg ttgtactttg
//
LOCUS       XM_032618637             297 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small integral membrane protein 18
            (SMIM18), mRNA.
ACCESSION   XM_032618637
VERSION     XM_032618637.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..297
                     /gene="SMIM18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:116746872"
     CDS             1..297
                     /gene="SMIM18"
                     /codon_start=1
                     /product="small integral membrane protein 18"
                     /protein_id="XP_032474528.1"
                     /db_xref="GeneID:116746872"
                     /translation="MASQSSSLWNETTTSVYQYLGFQVQKIYPFHDNWNTACFVILLL
                     FIFTVVSLVVLAFLYEALDCCCCVKNKTVKDLKNEPNPLRSMMDNIRKRETEVV"
     misc_feature    19..264
                     /gene="SMIM18"
                     /note="small integral membrane protein 22 (SMIM22) of
                     CASIMO1; Region: CASIMO1_SMIM22; cd20255"
                     /db_xref="CDD:380777"
ORIGIN      
        1 atggcctccc agagctcaag cctctggaat gaaacaacta catctgttta tcagtacctt
       61 ggttttcaag ttcaaaaaat ttaccccttc catgataact ggaacactgc ctgctttgtc
      121 attctgcttt tatttatatt tacagtggta tctttagtgg tgctggcttt cctttatgaa
      181 gcgcttgact gctgctgctg tgtaaaaaac aaaactgtga aagacttgaa aaatgaaccg
      241 aaccctctta gaagtatgat ggacaacatc agaaaacgtg aaactgaagt ggtctag
//
LOCUS       XM_032618638            1670 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TELO2 interacting protein 2 (TTI2),
            transcript variant X1, mRNA.
ACCESSION   XM_032618638
VERSION     XM_032618638.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1670
                     /gene="TTI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746877"
     CDS             31..1563
                     /gene="TTI2"
                     /codon_start=1
                     /product="TELO2-interacting protein 2 isoform X1"
                     /protein_id="XP_032474529.1"
                     /db_xref="GeneID:116746877"
                     /translation="MEPDGSRESPPREGSSFPGPWPSSALGQAFSQILHQFAGQESRR
                     GKARNAALRDLSAVLDAKECDQLFAGSDTSLRGMPEMLGQVAKALGKYAAPPEGPEGG
                     GDRHSEVAEKAAAVGLLFLKLLRKVETAKNSLVCPAWKAGLRHLAGPIYIFAITHNLE
                     QPWTSPKSQGVAGQVLALLLQVTECGSVAGFLNGENEDEKGRFTAVMGLLKPDLNKDS
                     WKSNPATKHVFSWTLQKVTRPWLSQHLERVLPPSLLISDDYQTENKILGVHCLHHIVL
                     NVPAADLLQYNRAQVLYHALFNHLYTREHHLIQVMAVLLCLLDLFPILEKALHWKGDA
                     ARPTTHCDEVLQLILMHMEPEHRLLLRRTYARNLPAFVKRLGILTVRHLKRLDRVIIG
                     YLEVYDGPEEEARLKILEALKLLMQYTWPRVPCRLVVLLKALLKLICDVARDSSLTPE
                     SVKSALLEEATDCLILLDRCSEGQVKGLLAKIPQSCEDSKVGNYIRRVQQVSEGAPYN
                     AT"
     misc_feature    <649..1188
                     /gene="TTI2"
                     /note="Tti2 family; Region: Tti2; pfam10521"
                     /db_xref="CDD:431336"
ORIGIN      
        1 tcgcctccat cctcgtcctc ggtctgaggc atggagcctg acggctctcg ggaatcccca
       61 cctcgggagg gctcttcctt tcctggaccg tggccttcct ccgccctcgg acaggccttc
      121 tcccagatct tgcaccagtt tgccggtcag gaatcccgac ggggcaaggc cagaaatgca
      181 gctcttcggg acctcagtgc tgtactagat gccaaagaat gtgatcagtt atttgcgggg
      241 agtgacacct cgctccgtgg aatgcccgag atgctggggc aggtggcaaa agccctgggg
      301 aagtatgcag ctcctcccga ggggccggaa gggggaggtg atcgtcactc cgaagtggcc
      361 gagaaagcgg cagcagttgg gttactcttc cttaagctgt tgaggaaagt tgagaccgct
      421 aagaattcct tggtttgccc tgcatggaag gcaggcctcc gtcacttggc aggacccatc
      481 tatatttttg ccatcacaca caacttggag caaccatgga ccagcccaaa atctcagggc
      541 gtcgctggac aggtgctcgc cttactgctt caggttactg agtgtggttc tgtggctgga
      601 ttcctcaacg gagaaaatga agatgagaaa gggagattta ctgcggtcat ggggcttctc
      661 aaacccgatt tgaataagga ctcctggaag agtaacccag ccaccaaaca tgttttctca
      721 tggactctgc aaaaggtcac tcgaccctgg ctgagccaac atctggaaag ggtacttccc
      781 ccatcattgc tcatctcaga tgactatcaa accgagaaca aaatcctggg tgtccactgc
      841 ctccatcaca ttgtgctaaa tgtgccagct gctgatttgc tgcagtacaa cagggcccaa
      901 gtcctatacc atgccctttt caaccacctg tacacacggg agcaccacct cattcaggta
      961 atggctgtgc tcctgtgtct gctggattta ttccccatcc tggagaaagc cctgcactgg
     1021 aagggagatg cagcccgacc caccacacac tgtgacgagg tcctgcagct gatcctgatg
     1081 cacatggagc ctgagcaccg ccttctctta cgcaggactt acgcaagaaa cctaccggct
     1141 ttcgtgaaga ggttggggat cttaactgtc cggcacttga agaggctgga tcgagtcatc
     1201 attggttatc tggaggttta tgatggaccc gaggaggagg ctagattgaa gatattggaa
     1261 gccctaaaac ttctcatgca gtatacttgg cccagagttc cctgtagact tgtggtctta
     1321 ctgaaggctc tcttgaaact gatatgtgat gtagcaaggg attcaagcct cacacccgaa
     1381 tctgttaaga gtgccttgtt agaagaggcc actgactgcc tgattctcct ggaccgctgc
     1441 tctgaaggac aggtgaaggg tctcctggct aaaattcccc aaagctgtga agacagtaag
     1501 gtggggaact atatccgaag agtgcagcag gtttctgaag gagctcccta caatgcaact
     1561 taagacttgt attactttcc tgaagaggaa aagattttct ttcttttcca attgttttaa
     1621 atggaatcat ttcaggaaaa aggtatattt atattaaaca ttataactta
//
LOCUS       XM_032618640            2357 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TELO2 interacting protein 2 (TTI2),
            transcript variant X2, mRNA.
ACCESSION   XM_032618640
VERSION     XM_032618640.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2357
                     /gene="TTI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746877"
     CDS             722..2248
                     /gene="TTI2"
                     /codon_start=1
                     /product="TELO2-interacting protein 2 isoform X2"
                     /protein_id="XP_032474531.1"
                     /db_xref="GeneID:116746877"
                     /translation="MEPDGSRESPPREGSSFPGPWPSSALGQAFSQILHQFAGQESRR
                     GKARNAALRDLSAVLDAKECDQLFAGSDTSLRGMPEMLGQVAKALGKYAAPPEGPEGG
                     GDRHSEVAEKAAAVGLLFLKLLRKVETAKNSLVCPAWKAGLRHLAGPIYIFAITHNLE
                     QPWTSPKSQGVAGQVLALLLQVTECGSVAGFLNGENEDEKGRFTAVMGLLKPDLNKDS
                     WKSNPATKHVFSWTLQKVTRPWLSQHLERVLPPSLLISDDYQTENKILGVHCLHHIVL
                     NVPAADLLQYNRAQVLYHALFNHLYTREHHLIQAVLLCLLDLFPILEKALHWKGDAAR
                     PTTHCDEVLQLILMHMEPEHRLLLRRTYARNLPAFVKRLGILTVRHLKRLDRVIIGYL
                     EVYDGPEEEARLKILEALKLLMQYTWPRVPCRLVVLLKALLKLICDVARDSSLTPESV
                     KSALLEEATDCLILLDRCSEGQVKGLLAKIPQSCEDSKVGNYIRRVQQVSEGAPYNAT
                     "
     misc_feature    <1340..1873
                     /gene="TTI2"
                     /note="Tti2 family; Region: Tti2; pfam10521"
                     /db_xref="CDD:431336"
ORIGIN      
        1 gccccgggta cgacccacta acttcacagt aagggtgaca gatgtagtgc atatttactt
       61 agacttgata tgaaaagtcc tgtatatttt atcatgttca ccgatattgc ctgatacttc
      121 tttcgtttct acctcagtaa gtgaaaacag aaaccaaata gcgatgcggc tattatccat
      181 gcaaatatac tctccatagc tccaccctct cttgaacccg ggtcgctatt gctttacggt
      241 agtacgtcgt gaaatgacgg agcgtagccg cggtaatggc ggaagctagc cttgtgcttt
      301 gcggcaacga cgtttgctaa attggatcct gataggcgca ggcgtgccgg aagggctgaa
      361 ggtaacggcg gccctgttag tgtcacgcct tagagattta tttctcaggc tctttaggat
      421 atttttgttt ctcttctttt tttttttttt tttttgagtc ttcagagagg caagagtaat
      481 ttctcccttc tactgttgag aatctgagct tctgttactc tcagagaacc ccctttcccg
      541 catcttttcc tttatacctt tactcttctg cgggctagac tctccctcgg tcctccaaga
      601 cgtctcaccg ttttatttga ttttagttct gttctttgag agaatcccag ccccggagtt
      661 atctttcctt ccctctttag cggacccccg ctcgcctcca tcctcgtcct cggtctgagg
      721 catggagcct gacggctctc gggaatcccc acctcgggag ggctcttcct ttcctggacc
      781 gtggccttcc tccgccctcg gacaggcctt ctcccagatc ttgcaccagt ttgccggtca
      841 ggaatcccga cggggcaagg ccagaaatgc agctcttcgg gacctcagtg ctgtactaga
      901 tgccaaagaa tgtgatcagt tatttgcggg gagtgacacc tcgctccgtg gaatgcccga
      961 gatgctgggg caggtggcaa aagccctggg gaagtatgca gctcctcccg aggggccgga
     1021 agggggaggt gatcgtcact ccgaagtggc cgagaaagcg gcagcagttg ggttactctt
     1081 ccttaagctg ttgaggaaag ttgagaccgc taagaattcc ttggtttgcc ctgcatggaa
     1141 ggcaggcctc cgtcacttgg caggacccat ctatattttt gccatcacac acaacttgga
     1201 gcaaccatgg accagcccaa aatctcaggg cgtcgctgga caggtgctcg ccttactgct
     1261 tcaggttact gagtgtggtt ctgtggctgg attcctcaac ggagaaaatg aagatgagaa
     1321 agggagattt actgcggtca tggggcttct caaacccgat ttgaataagg actcctggaa
     1381 gagtaaccca gccaccaaac atgttttctc atggactctg caaaaggtca ctcgaccctg
     1441 gctgagccaa catctggaaa gggtacttcc cccatcattg ctcatctcag atgactatca
     1501 aaccgagaac aaaatcctgg gtgtccactg cctccatcac attgtgctaa atgtgccagc
     1561 tgctgatttg ctgcagtaca acagggccca agtcctatac catgcccttt tcaaccacct
     1621 gtacacacgg gagcaccacc tcattcaggc tgtgctcctg tgtctgctgg atttattccc
     1681 catcctggag aaagccctgc actggaaggg agatgcagcc cgacccacca cacactgtga
     1741 cgaggtcctg cagctgatcc tgatgcacat ggagcctgag caccgccttc tcttacgcag
     1801 gacttacgca agaaacctac cggctttcgt gaagaggttg gggatcttaa ctgtccggca
     1861 cttgaagagg ctggatcgag tcatcattgg ttatctggag gtttatgatg gacccgagga
     1921 ggaggctaga ttgaagatat tggaagccct aaaacttctc atgcagtata cttggcccag
     1981 agttccctgt agacttgtgg tcttactgaa ggctctcttg aaactgatat gtgatgtagc
     2041 aagggattca agcctcacac ccgaatctgt taagagtgcc ttgttagaag aggccactga
     2101 ctgcctgatt ctcctggacc gctgctctga aggacaggtg aagggtctcc tggctaaaat
     2161 tccccaaagc tgtgaagaca gtaaggtggg gaactatatc cgaagagtgc agcaggtttc
     2221 tgaaggagct ccctacaatg caacttaaga cttgtattac tttcctgaag aggaaaagat
     2281 tttctttctt ttccaattgt tttaaatgga atcatttcag gaaaaaggta tatttatatt
     2341 aaacattata acttaga
//
LOCUS       XR_004347905            2786 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TELO2 interacting protein 2 (TTI2),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004347905
VERSION     XR_004347905.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2786
                     /gene="TTI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746877"
     misc_RNA        1..2786
                     /gene="TTI2"
                     /product="TELO2 interacting protein 2, transcript variant
                     X3"
                     /db_xref="GeneID:116746877"
ORIGIN      
        1 aggcgtgccg gaagggctga aggtaacggc ggccctgtta gtgtcacgcc ttagagattt
       61 atttctcagg ctctttagga tatttttgtt tctcttcttt tttttttttt ttttttgagt
      121 cttcagagag gcaagagtaa tttctccctt ctactgttga gaatctgagc ttctgttact
      181 ctcagagaac cccctttccc gcatcttttc ctttatacct ttactcttct gcgggctaga
      241 ctctccctcg gtcctccaag acgtctcacc gttttatttg attttagttc tgttctttga
      301 gagaatccca gccccggagt tatctttcct tccctcttta gcggaccccc gctcgcctcc
      361 atcctcgtcc tcggtctgag gcatggagcc tgacggctct cgggaatccc cacctcggga
      421 gggctcttcc tttcctggac cgtggccttc ctccgccctc ggacaggcct tctcccagat
      481 cttgcaccag tttgccggtc aggaatcccg acggggcaag gccagaaatg cagctcttcg
      541 ggacctcagt gctgtactag atgccaaaga atgtgatcag ttatttgcgg ggagtgacac
      601 ctcgctccgt ggaatgcccg agatgctggg gcaggtggca aaagccctgg ggaagtatgc
      661 agctcctccc gaggggccgg aagggggagg tgatcgtcac tccgaagtgg ccgagaaagc
      721 ggcagcagtt gggttactct tccttaagct gttgaggaaa gttgagaccg ctaagaattc
      781 cttggtttgc cctgcatgga aggcaggcct ccgtcacttg gcaggaccca tctatatttt
      841 tgccatcaca cacaacttgg agcaaccatg gaccagccca aaatctcagg gcgtcgctgg
      901 acaggtgctc gccttactgc ttcaggttac tgagtgtggt tctgtggctg gattcctcaa
      961 cggagaaaat gaagatgaga aagggagatt tactgcggtc atggggcttc tcaaacccga
     1021 tttgaataag gactcctgga agagtaaccc agccaccaaa catgttttct catggactct
     1081 gcaaaaggtc actcgaccct ggctgagcca acatctggaa agggtacttc ccccatcatt
     1141 gctcatctca gatgactatc aaaccgagaa caaaatcctg ggtgtccact gcctccatca
     1201 cattgtgcta aatgtgccag ctgctgattt gctgcagtac aacagggccc aagtcctata
     1261 ccatgccctt ttcaaccacc tgtacacacg ggagcaccac ctcattcagg ctgtgctcct
     1321 gtgtctgctg gatttattcc ccatcctgga gaaagccctg cactggaagg gagatgcagc
     1381 ccgacccacc acacactgtg acgaggtcct gcagctgatc ctgatgcaca tggagcctga
     1441 gcaccgcctt ctcttacgca ggacttacgc aagaaaccta ccggctttcg tgaagaggtt
     1501 ggggatctta actgtccggc acttgaagag gctggatcga gtcatcattg gttatctgga
     1561 ggtttatgat ggacccgagg aggaggctag attgaagata ttggaagccc taaaacttct
     1621 catgcagtat acttggccca gagttccctg tagacttgtg gtcttactga aggctctctt
     1681 gaaactgata tgtgatgtag caagggattc aagcctcaca cccgaatctg ttaagagtgc
     1741 cttgttagaa gaggccactg actgcctgat tctcctggac cgctgctctg aaggacaggt
     1801 gaagggtctc ctggctaaaa ttccccaaag ctgtgaagac agtaaggtgg ggaactatat
     1861 ccgaagagtg cagcaggttt ctgaaggagc tccctacaat gcaacttaag acttgtatta
     1921 ctttcctgaa gaggaaaaga ttttctttct tttccaattg ttttaaatgg aatcatttca
     1981 ggaaaaagca tctgaagagc cactgtctgc ctcctgctgt tccagggcct tgtcgaaggc
     2041 atggatgggg aagttgtaga tgtcgccata ctaaagaaca taaacgtggg tcagctttaa
     2101 ccacatttgg atcttatgct tgaagtccac tgtccaacaa gtatattatt ttcctcagtg
     2161 atcaaacaag aataattagt aatattacta tattattttc aggcctagag ccagcagtgt
     2221 ctttcaaaaa cccatatttg acatttaaat aatcagcgat taataccaaa caggcacctt
     2281 ctatgaagga tggataccag atcacttaaa acttaatagt ctataaaacc catggattgg
     2341 aacaaatgta attttgctga taaaggggaa atagtaagga aaaagtaagt tttattcatg
     2401 ttgtttctgt aaatgacaaa tttttcaaaa gacaataaaa attcatttta aagaacctta
     2461 aaagtctagg atgaataggc aggaggatcg aaactgtacg gcttttatag agagatctgg
     2521 agttgttgtg tttgggaggg ggagttggga ataatggcaa aaaaggaaag gtctccctac
     2581 tgaagtatca agagtaacta aaatatttta tgtgcttgat caggaaacta aaatgaggaa
     2641 gccagggtct atatgaaatc tattttattc cagtaataaa atcaaggtga agatctttct
     2701 agcatcttta aaaataaaac acatttccca ctattcctac atttcctagc atattaccac
     2761 ctaaaaaata aaatctgtac cccaaa
//
LOCUS       XR_004347906            3044 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TELO2 interacting protein 2 (TTI2),
            transcript variant X4, misc_RNA.
ACCESSION   XR_004347906
VERSION     XR_004347906.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3044
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3044
                     /gene="TTI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746877"
     misc_RNA        1..3044
                     /gene="TTI2"
                     /product="TELO2 interacting protein 2, transcript variant
                     X4"
                     /db_xref="GeneID:116746877"
ORIGIN      
        1 tcgcctccat cctcgtcctc ggtctgaggc atggagcctg acggctctcg ggaatcccca
       61 cctcgggagg gctcttcctt tcctggaccg tggccttcct ccgccctcgg acaggccttc
      121 tcccagatct tgcaccagtt tgccggtcag gaatcccgac ggggcaaggc cagaaatgca
      181 gctcttcggg acctcagtgc tgtactagat gccaaagaat gtgatcagtt atttgcgggg
      241 agtgacacct cgctccgtgg aatgcccgag atgctggggc aggtggcaaa agccctgggg
      301 aagtatgcag ctcctcccga ggggccggaa gggggaggtg atcgtcactc cgaagtggcc
      361 gagaaagcgg cagcagttgg gttactcttc cttaagctgt tgaggaaagt tgagaccgct
      421 aagaattcct tggtttgccc tgcatggaag gcaggcctcc gtcacttggc aggacccatc
      481 tatatttttg ccatcacaca caacttggag caaccatgga ccagcccaaa atctcagggc
      541 gtcgctggac aggtgctcgc cttactgctt caggttactg agtgtggttc tgtggctgga
      601 ttcctcaacg gagaaaatga agatgagaaa gggagattta ctgcggtcat ggggcttctc
      661 aaacccgatt tgaataagga ctcctggaag agtaacccag ccaccaaaca tgttttctca
      721 tggactctgc aaaaggtcac tcgaccctgg ctgagccaac atctggaaag ggtacttccc
      781 ccatcattgc tcatctcaga tgactatcaa accgagaaca aaatcctggg tgtccactgc
      841 ctccatcaca ttgtgctaaa tgtgccagct gctgatttgc tgcagtacaa cagggcccaa
      901 gtcctatacc atgccctttt caaccacctg tacacacggg agcaccacct cattcaggct
      961 gtgctcctgt gtctgctgga tttattcccc atcctggaga aagccctgca ctggaaggga
     1021 gatgcagccc gacccaccac acactgtgac gaggtcctgc agctgatcct gatgcacatg
     1081 gagcctgagc accgccttct cttacgcagg acttacgcaa gaaacctacc ggctttcgtg
     1141 aagaggttgg ggatcttaac tgtccggcac ttgaagaggc tggatcgagt catcattggt
     1201 tatctggagg tttatgatgg acccgaggag gaggctagat tgaagatatt ggaagcccta
     1261 aaacttctca tgcagtatac ttggcccaga gaatggagca ctcatagcac atcactgaac
     1321 atctgtggta atcagaatac tgatctggga tatatttgct tagcattcca actctggctc
     1381 gaggtaggtg tcccgaacag caagctggaa cccaaacatg ttgggtctgc agaaggctct
     1441 cttgcatgaa atgtttaatt cagcgagagt ccagtgcctc agcaatacgt gggtgtctct
     1501 gttctgagcc gtattctctc atctcctcat aatgtacccc acagtcacat ttgtaacgag
     1561 gttgcattta tttgcttact gtctttctcc tctactgaac tagaagctcc aggatggaag
     1621 actgaccact tgagtacact gagaactcca gaacttactc agaacctggt attaagtaca
     1681 cagatatttt tagtgactgg aataggtgca tgaatgcaat tgaatcagac taatactgtc
     1741 caagtagaag aggtcagcaa gcgaacgtag aggtcagaaa atgaatgtca attatggagg
     1801 ggccggagcc tggggagtgg gaaacagcaa attgtgtgtt gagtgatgac aggtggaggg
     1861 ctgagcagca cacaagttac aggaaaacac ttcatgtttt ttagatcaag atgagggatg
     1921 gaaacttttc ttctcccagt cacatttctg cccagaagta tagtttattt atattttcac
     1981 actacaagtt taattatttt tcagcttcct taaggctttt tagttttttt ttattgtggt
     2041 taaaaaatac ataaaattta ccattttaaa gtgtacaatt cagtggcatt aagtgcattt
     2101 acaattttgt gtaatcatta tcataaaaac ttttagaaac actaagtaga agtaaataga
     2161 ctgggcctaa gtggtggtaa tctaggatct agaaatatag tgacagaaaa ctcaaattga
     2221 cacgtaagtc tcaaaagcca agcttatttc cctcactgta tttttaatct ccaggcctaa
     2281 gaccgcatca aagctaaaga actgtggacc atttcctgtt ctctggtcaa aagtataggc
     2341 ccctggtaag ggaggtccca gttctccctt ttcaggaggg gctgtttgct tacggtagga
     2401 ccatgcttat ggagggaaac taggtattcc tgggcaggcc agaatgtcag tgtgtatggg
     2461 cagcatgctg tagaaaaaac caagggcctt aaagttcaga aatctggagt ctggtctcga
     2521 gttctgcttc cagctctgtg gtcttaaatt ttgacttcag ttccttcatt tatgaaatga
     2581 gggttttcta ctagatggcc tttgaagtct ctttcagttt taatatcctg attcggagtc
     2641 tgaacatcat ttttcttctt gattccagag ttccctgtag acttgtggtc ttactgaagg
     2701 ctctcttgaa actgatatgt gatgtagcaa gggattcaag cctcacaccc gaatctgtta
     2761 agagtgcctt gttagaagag gccactgact gcctgattct cctggaccgc tgctctgaag
     2821 gacaggtgaa gggtctcctg gctaaaattc cccaaagctg tgaagacagt aaggtgggga
     2881 actatatccg aagagtgcag caggtttctg aaggagctcc ctacaatgca acttaagact
     2941 tgtattactt tcctgaagag gaaaagattt tctttctttt ccaattgttt taaatggaat
     3001 catttcagga aaaaggtata tttatattaa acattataac ttag
//
LOCUS       XR_004347907            4277 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TELO2 interacting protein 2 (TTI2),
            transcript variant X5, misc_RNA.
ACCESSION   XR_004347907
VERSION     XR_004347907.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4277
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4277
                     /gene="TTI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746877"
     misc_RNA        1..4277
                     /gene="TTI2"
                     /product="TELO2 interacting protein 2, transcript variant
                     X5"
                     /db_xref="GeneID:116746877"
ORIGIN      
        1 aagggctgaa ggtaacggcg gccctgttag tgtcacgcct tagagattta tttctcaggc
       61 tctttaggat atttttgttt ctcttctttt tttttttttt tttttgagtc ttcagagagg
      121 caagagtaat ttctcccttc tactgttgag aatctgagct tctgttactc tcagagaacc
      181 ccctttcccg catcttttcc tttatacctt tactcttctg cgggctagac tctccctcgg
      241 tcctccaaga cgtctcaccg ttttatttga ttttagttct gttctttgag agaatcccag
      301 ccccggagtt atctttcctt ccctctttag cggacccccg ctcgcctcca tcctcgtcct
      361 cggtctgagg catggagcct gacggctctc gggaatcccc acctcgggag ggctcttcct
      421 ttcctggacc gtggccttcc tccgccctcg gacaggcctt ctcccagatc ttgcaccagt
      481 ttgccggtca ggaatcccga cggggcaagg ccagaaatgc agctcttcgg gacctcagtg
      541 ctgtactaga tgccaaagaa tgtgatcagt tatttgcggg gagtgacacc tcgctccgtg
      601 gaatgcccga gatgctgggg caggtggcaa aagccctggg gaagtatgca gctcctcccg
      661 aggggccgga agggggaggt gatcgtcact ccgaagtggc cgagaaagcg gcagcagttg
      721 ggttactctt ccttaagctg ttgaggaaag ttgagaccgc taagaattcc ttggtttgcc
      781 ctgcatggaa ggcaggcctc cgtcacttgg caggacccat ctatattttt gccatcacac
      841 acaacttgga gcaaccatgg accagcccaa aatctcaggg cgtcgctgga caggtgctcg
      901 ccttactgct tcaggttact gagtgtggtt ctgtggctgg attcctcaac ggagaaaatg
      961 aagatgagaa agggagattt actgcggtca tggggcttct caaacccgat ttgaataagg
     1021 actcctggaa gagtaaccca gccaccaaac atgttttctc atggactctg caaaaggtca
     1081 ctcgaccctg gctgagccaa catctggaaa gggtacttcc cccatcattg ctcatctcag
     1141 atgactatca aaccgagaac aaaatcctgg gtgtccactg cctccatcac attgtgctaa
     1201 atgtgccagc tgctgatttg ctgcagtaca acagggccca agtcctatac catgcccttt
     1261 tcaaccacct gtacacacgg gagcaccacc tcattcaggc tgtgctcctg tgtctgctgg
     1321 atttattccc catcctggag aaagccctgc actggaaggg agatgcagcc cgacccacca
     1381 cacactgtga cgaggtcctg cagctgatcc tgatgcacat ggagcctgag caccgccttc
     1441 tcttacgcag gacttacgca agaaacctac cggctttcgt gaagaggttg gggatcttaa
     1501 ctgtccggca cttgaagagg ctggatcgag tcatcattgg ttatctggag gtttatgatg
     1561 gacccgagga ggaggctaga ttgaagatat tggaagccct aaaacttctc atgcagtata
     1621 cttggcccag gtatgacagc cagcagacag gtgtgctaag aggggcaaaa ctcagccgat
     1681 actcccttca gaacttgccc aggtgtacat tcagtacaaa gtattaagga cgtgccatat
     1741 atttgaatac ctcctgtttt tccataccaa ttggattttg aactgtgaaa gtggcattga
     1801 agatataata tagtcagttc cttcaggtgt acatttctct ggatttataa tgcatattag
     1861 aattttaaag gccatttagc agtgctacag tagacgtact taactttgtt caccataatg
     1921 tttcttaaat ctgatagaga atggagcact catagcacat cactgaacat ctgtggtaat
     1981 cagaatactg atctgggata tatttgctta gcattccaac tctggctcga ggtaggtgtc
     2041 ccgaacagca agctggaacc caaacatgtt gggtctgcag aaggctctct tgcatgaaat
     2101 gtttaattca gcgagagtcc agtgcctcag caatacgtgg gtgtctctgt tctgagccgt
     2161 attctctcat ctcctcataa tgtaccccac agtcacattt gtaacgaggt tgcatttatt
     2221 tgcttactgt ctttctcctc tactgaacta gaagctccag gatggaagac tgaccacttg
     2281 agtacactga gaactccaga acttactcag aacctggtat taagtacaca gatattttta
     2341 gtgactggaa taggtgcatg aatgcaattg aatcagacta atactgtcca agtagaagag
     2401 gtcagcaagc gaacgtagag gtcagaaaat gaatgtcaat tatggagggg ccggagcctg
     2461 gggagtggga aacagcaaat tgtgtgttga gtgatgacag gtggagggct gagcagcaca
     2521 caagttacag gaaaacactt catgtttttt agatcaagat gagggatgga aacttttctt
     2581 ctcccagtca catttctgcc cagaagtata gtttatttat attttcacac tacaagttta
     2641 attatttttc agcttcctta aggcttttta gttttttttt attgtggtta aaaaatacat
     2701 aaaatttacc attttaaagt gtacaattca gtggcattaa gtgcatttac aattttgtgt
     2761 aatcattatc ataaaaactt ttagaaacac taagtagaag taaatagact gggcctaagt
     2821 ggtggtaatc taggatctag aaatatagtg acagaaaact caaattgaca cgtaagtctc
     2881 aaaagccaag cttatttccc tcactgtatt tttaatctcc aggcctaaga ccgcatcaaa
     2941 gctaaagaac tgtggaccat ttcctgttct ctggtcaaaa gtataggccc ctggtaaggg
     3001 aggtcccagt tctccctttt caggaggggc tgtttgctta cggtaggacc atgcttatgg
     3061 agggaaacta ggtattcctg ggcaggccag aatgtcagtg tgtatgggca gcatgctgta
     3121 gaaaaaacca agggccttaa agttcagaaa tctggagtct ggtctcgagt tctgcttcca
     3181 gctctgtggt cttaaatttt gacttcagtt ccttcattta tgaaatgagg gttttctact
     3241 agatggcctt tgaagtctct ttcagtttta atatcctgat tcggagtctg aacatcattt
     3301 ttcttcttga ttccagagtt ccctgtagac ttgtggtctt actgaaggct ctcttgaaac
     3361 tgatatgtga tgtagcaagg gattcaagcc tcacacccga atctgttaag agtgccttgt
     3421 tagaagaggc cactgactgc ctgattctcc tggaccgctg ctctgaagga caggtgaagc
     3481 atctgaagag ccactgtctg cctcctgctg ttccagggcc ttgtcgaagg catggatggg
     3541 gaagttgtag atgtcgccat actaaagaac ataaacgtgg gtcagcttta accacatttg
     3601 gatcttatgc ttgaagtcca ctgtccaaca agtatattat tttcctcagt gatcaaacaa
     3661 gaataattag taatattact atattatttt caggcctaga gccagcagtg tctttcaaaa
     3721 acccatattt gacatttaaa taatcagcga ttaataccaa acaggcacct tctatgaagg
     3781 atggatacca gatcacttaa aacttaatag tctataaaac ccatggattg gaacaaatgt
     3841 aattttgctg ataaagggga aatagtaagg aaaaagtaag ttttattcat gttgtttctg
     3901 taaatgacaa atttttcaaa agacaataaa aattcatttt aaagaacctt aaaagtctag
     3961 gatgaatagg caggaggatc gaaactgtac ggcttttata gagagatctg gagttgttgt
     4021 gtttgggagg gggagttggg aataatggca aaaaaggaaa ggtctcccta ctgaagtatc
     4081 aagagtaact aaaatatttt atgtgcttga tcaggaaact aaaatgagga agccagggtc
     4141 tatatgaaat ctattttatt ccagtaataa aatcaaggtg aagatctttc tagcatcttt
     4201 aaaaataaaa cacatttccc actattccta catttcctag catattacca cctaaaaaat
     4261 aaaatctgta ccccaaa
//
LOCUS       XR_004347908            3191 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TELO2 interacting protein 2 (TTI2),
            transcript variant X6, misc_RNA.
ACCESSION   XR_004347908
VERSION     XR_004347908.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3191
                     /gene="TTI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746877"
     misc_RNA        1..3191
                     /gene="TTI2"
                     /product="TELO2 interacting protein 2, transcript variant
                     X6"
                     /db_xref="GeneID:116746877"
ORIGIN      
        1 tcgcctccat cctcgtcctc ggtctgaggc atggagcctg acggctctcg ggaatcccca
       61 cctcgggagg gctcttcctt tcctggaccg tggccttcct ccgccctcgg acaggccttc
      121 tcccagatct tgcaccagtt tgccggtcag gaatcccgac ggggcaaggc cagaaatgca
      181 gctcttcggg acctcagtgc tgtactagat gccaaagaat gtgatcagtt atttgcgggg
      241 agtgacacct cgctccgtgg aatgcccgag atgctggggc aggtggcaaa agccctgggg
      301 aagtatgcag ctcctcccga ggggccggaa gggggaggtg atcgtcactc cgaagtggcc
      361 gagaaagcgg cagcagttgg gttactcttc cttaagctgt tgaggaaagt tgagaccgct
      421 aagaattcct tggtttgccc tgcatggaag gcaggcctcc gtcacttggc aggacccatc
      481 tatatttttg ccatcacaca caacttggag caaccatgga ccagcccaaa atctcagggc
      541 gtcgctggac aggtgctcgc cttactgctt caggttactg agtgtggttc tgtggctgga
      601 ttcctcaacg gagaaaatga agatgagaaa gggagattta ctgcggtcat ggggcttctc
      661 aaacccgatt tgaataagga ctcctggaag agtaacccag ccaccaaaca tgttttctca
      721 tggactctgc aaaaggtcac tcgaccctgg ctgagccaac atctggaaag ggtacttccc
      781 ccatcattgc tcatctcaga tgactatcaa accgagaaca aaatcctggg tgtccactgc
      841 ctccatcaca ttgtgctaaa tgtgccagct gctgatttgc tgcagtacaa cagggcccaa
      901 gtcctatacc atgccctttt caaccacctg tacacacggg agcaccacct cattcaggct
      961 gtgctcctgt gtctgctgga tttattcccc atcctggaga aagccctgca ctggaaggga
     1021 gatgcagccc gacccaccac acactgtgac gaggtcctgc agctgatcct gatgcacatg
     1081 gagcctgagc accgccttct cttacgcagg acttacgcaa gaaacctacc ggctttcgtg
     1141 aagaggttgg ggatcttaac tgtccggcac ttgaagaggc tggatcgagt catcattggt
     1201 tatctggagg tttatgatgg acccgaggag gaggctagat tgaagatatt ggaagcccta
     1261 aaacttctca tgcagtatac ttggcccagg tatgacagcc agcagacagg tgtgctaaga
     1321 ggggcaaaac tcagccgata ctcccttcag aacttgccca ggtgtacatt cagtacaaag
     1381 tattaaggac gtgccatata tttgaatacc tcctgttttt ccataccaat tggattttga
     1441 actgtgaaag tggcattgaa gatataatat agtcagttcc ttcaggtgta catttctctg
     1501 gatttataat gcatattaga attttaaagg ccatttagca gtgctacagt agacgtactt
     1561 aactttgttc accataatgt ttcttaaatc tgatagagaa tggagcactc atagcacatc
     1621 actgaacatc tgtggtaatc agaatactga tctgggatat atttgcttag cattccaact
     1681 ctggctcgag gtaggtgtcc cgaacagcaa gctggaaccc aaacatgttg ggtctgcaga
     1741 aggctctctt gcatgaaatg tttaattcag cgagagtcca gtgcctcagc aatacgtggg
     1801 tgtctctgtt ctgagccgta ttctctcatc tcctcataat gtaccccaca gtcacatttg
     1861 taacgaggtt gcatttattt gcttactgtc tttctcctct actgaactag aagctccagg
     1921 atggaagact gaccacttga gtacactgag aactccagaa cttactcaga acctggccta
     1981 agaccgcatc aaagctaaag aactgtggac catttcctgt tctctggtca aaagtatagg
     2041 cccctgagtt ccctgtagac ttgtggtctt actgaaggct ctcttgaaac tgatatgtga
     2101 tgtagcaagg gattcaagcc tcacacccga atctgttaag agtgccttgt tagaagaggc
     2161 cactgactgc ctgattctcc tggaccgctg ctctgaagga caggtgaagg gtctcctggc
     2221 taaaattccc caaagctgtg aagacagtaa ggtggggaac tatatccgaa gagtgcagca
     2281 ggtttctgaa ggagctccct acaatgcaac ttaagacttg tattactttc ctgaagagga
     2341 aaagattttc tttcttttcc aattgtttta aatggaatca tttcaggaaa aagcatctga
     2401 agagccactg tctgcctcct gctgttccag ggccttgtcg aaggcatgga tggggaagtt
     2461 gtagatgtcg ccatactaaa gaacataaac gtgggtcagc tttaaccaca tttggatctt
     2521 atgcttgaag tccactgtcc aacaagtata ttattttcct cagtgatcaa acaagaataa
     2581 ttagtaatat tactatatta ttttcaggcc tagagccagc agtgtctttc aaaaacccat
     2641 atttgacatt taaataatca gcgattaata ccaaacaggc accttctatg aaggatggat
     2701 accagatcac ttaaaactta atagtctata aaacccatgg attggaacaa atgtaatttt
     2761 gctgataaag gggaaatagt aaggaaaaag taagttttat tcatgttgtt tctgtaaatg
     2821 acaaattttt caaaagacaa taaaaattca ttttaaagaa ccttaaaagt ctaggatgaa
     2881 taggcaggag gatcgaaact gtacggcttt tatagagaga tctggagttg ttgtgtttgg
     2941 gagggggagt tgggaataat ggcaaaaaag gaaaggtctc cctactgaag tatcaagagt
     3001 aactaaaata ttttatgtgc ttgatcagga aactaaaatg aggaagccag ggtctatatg
     3061 aaatctattt tattccagta ataaaatcaa ggtgaagatc tttctagcat ctttaaaaat
     3121 aaaacacatt tcccactatt cctacatttc ctagcatatt accacctaaa aaataaaatc
     3181 tgtaccccaa a
//
LOCUS       XR_004347909            5489 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus TELO2 interacting protein 2 (TTI2),
            transcript variant X7, misc_RNA.
ACCESSION   XR_004347909
VERSION     XR_004347909.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5489
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5489
                     /gene="TTI2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746877"
     misc_RNA        1..5489
                     /gene="TTI2"
                     /product="TELO2 interacting protein 2, transcript variant
                     X7"
                     /db_xref="GeneID:116746877"
ORIGIN      
        1 gtcaaaatct aaagtcagtt tcttattttt ccatgcggtt atgccagtaa cttgaaatat
       61 actttgattc atgactttct ttttctttta ggaaatactt tgcattttct tctataaacg
      121 aattatgtaa agtacctaca tgatgccaaa gtcaaaacta taagacagag tatatgaaat
      181 gaagtctagc ttccatactc atttttttca tctttgttct tttcttacac ataacccttt
      241 tttattagtt tgtaatttag tctgccattg ctgctgcttt aaaatgtgag caaatgcacc
      301 acacctttct caggagagaa gcaacatata catggcctca gccttgcttt tttcacttaa
      361 ataatatatc ctagcatccc atggcctcca cagagatagt cttcattcct ttgtactgct
      421 gcacagaact gcattgtgtg gatataccgt gctttattca accagtcctc tgtggatgga
      481 catgtgggtt caacaaacat ttactgcata actaaattgt gccaggcact ggagagcaag
      541 gcatggtgtc tggcctcagg aaactcagag tgtagagagg gtgaacgctt gcaatacaag
      601 cactttccta agggagtgag atcttggatc cacttagcac aaagggcaca tggaacaggg
      661 aagacagtgt cccacacagg agggatacag taactgtctg tggattgcca ccttgctccc
      721 ataggggtca atatctggga gatcttgata ggggagaatc cccttgggag gagttttttt
      781 tttgtttttt ttttttgttt ttttgcgata cgcgggcctc tcactgttgt ggcctctccc
      841 gttgtggagc acaggctccg gacgtgcagg ctcagcggcc atggctcacg ggcccagccg
      901 ctctgcggca tgtgggatct tcccagaccg ggacacgaac ccgcgtcccc tgcatcggca
      961 ggcagactct caaccactgc gccaccaggg aagcccttgg gaggagtttt taatcaatgt
     1021 ttgaaactgc ttagaaaaag atgagtgcca ccagttggcc ggagaaagaa agaccaaggg
     1081 aaagacgtgg aaaggaaggg tcctaaccat aaaattcccc tgaaaagaaa aaatgtaagt
     1141 taatacagga gctgtggttt aacagtaaga actaacacct gtataaaatt taccacggac
     1201 cagaaattgc tctaagccgt ttaagtatat ttaactttaa caattctacg aagtaggaac
     1261 tattactacc cacgttttac cttcgaaaaa aattagggca cggagaggtc gccgaacttt
     1321 ccatcaaggt cacagaacgg gcgagggggg ttaggagcga gaaagcactc gcagtcaaga
     1381 tccgcagatc ggctatctgt aagcggtgcc gtctccaagg cgagacgaaa gcccttaagt
     1441 ctcccttcac tctcacagcc ccctggggac cagagcctac tcttagcact ccccgggcgc
     1501 ggcctctcca ccccaagatc cgaaaacccc gcaggttatg ctctaggcgc cttgcggctc
     1561 ggaagccaga aaaatcccaa agacttgcgg gacggtgggc gcaaactagg ccggccggcc
     1621 ggcggggcaa ggtgcgtttg agcctcggtg cggggcagca cgctgcgaac gcctccacga
     1681 aaagcggcgc cgcctgcttt ccgactcctt ccggtgtccg ccgcccgttt ctaggcgctc
     1741 ccgcccatgt cttggagcaa atacggtgtg cttccccggg cacctaccac acaacgcaag
     1801 ttatgagaag tcaccggcaa acgccctggc aaagccgggg accgtgcccg gcccccgggg
     1861 aacccaagat ctaaggttct cagctccacc gtccgaaaag ccgcagcagg agacccgcca
     1921 gaacaaaaag tcgcacgggg ccgtggctcc ttccgctgcc cccaccccta ccacttagag
     1981 ctgccgaccc cgccccggga gccgcccgaa cacacgcggg gaaacacttc acgtgcacac
     2041 ccgcgggcgg gcccgagcca cacccggatc agccgcgttt ctagcgaaac cccggtcgtc
     2101 gcagaccatt ttcaaactcc tcgcttacca gcgacttccg ccttttttcc tttttaaaag
     2161 cccacggcaa tcaacattaa aaatctaact gcagaaagag aaaaatcaaa gctaacgcag
     2221 aactcggagt caaacacgcc tcacaatcac gtactagaca cagaacgata agcactatca
     2281 acaaccaaac catcgcagga ttaagaggat ccttcatagt tcatgtcaga cgggtaatgt
     2341 gccacagtcg taacaaggtt ggaaggaggc acatatcaca caagcgcgtg aacacccaat
     2401 catcacactt atgaactaca aaaggatcaa cgtgactcgt cggctaagga gccccgggta
     2461 cgacccacta acttcacagt aagggtgaca gatgtagtgc atatttactt agacttgata
     2521 tgaaaagtcc tgtatatttt atcatgttca ccgatattgc ctgatacttc tttcgtttct
     2581 acctcagtaa gtgaaaacag aaaccaaata gcgatgcggc tattatccat gcaaatatac
     2641 tctccatagc tccaccctct cttgaacccg ggtcgctatt gctttacggt agtacgtcgt
     2701 gaaatgacgg agcgtagccg cggtaatggc ggaagctagc cttgtgcttt gcggcaacga
     2761 cgtttgctaa attggatcct gataggcgca ggcgtgccgg aagggctgaa ggtaacggcg
     2821 gccctgttag tgtcacgcct tagagattta tttctcaggc tctttaggat atttttgttt
     2881 ctcttctttt tttttttttt tttttgagtc ttcagagagg caagagtaat ttctcccttc
     2941 tactgttgag aatctgagct tctgttactc tcagagaacc ccctttcccg catcttttcc
     3001 tttatacctt tactcttctg cgggctagac tctccctcgg tcctccaaga cgtctcaccg
     3061 ttttatttga ttttagttct gttctttgag agaatcccag ccccggagtt atctttcctt
     3121 ccctctttag cggacccccg ctcgcctcca tcctcgtcct cggtctgagg catggagcct
     3181 gacggctctc gggaatcccc acctcgggag ggctcttcct ttcctggacc gtggccttcc
     3241 tccgccctcg gacaggcctt ctcccagatc ttgcaccagt ttgccggtca ggaatcccga
     3301 cggggcaagg ccagaaatgc agctcttcgg gacctcagtg ctgtactaga tgccaaagaa
     3361 tgtgatcagt tatttgcggg gagtgacacc tcgctccgtg gaatgcccga gatgctgggg
     3421 caggtggcaa aagccctggg gaagtatgca gctcctcccg aggggccgga agggggaggt
     3481 gatcgtcact ccgaagtggc cgagaaagcg gcagcagttg ggttactctt ccttaagctg
     3541 ttgaggaaag ttgagaccgc taagaattcc ttggtttgcc ctgcatggaa ggcaggcctc
     3601 cgtcacttgg caggacccat ctatattttt gccatcacac acaacttgga gcaaccatgg
     3661 accagcccaa aatctcaggg cgtcgctgga caggtgctcg ccttactgct tcaggttact
     3721 gagtgtggtt ctgtggctgg attcctcaac ggagaaaatg aagatgagaa agggagattt
     3781 actgcggtca tggggcttct caaacccgat ttgaataagg actcctggaa gagtaaccca
     3841 gccaccaaac atgttttctc atggactctg caaaaggtca ctcgaccctg gctgagccaa
     3901 catctggaaa gggtacttcc cccatcattg ctcatctcag atgactatca aaccgagaac
     3961 aaaatcctgg gtgtccactg cctccatcac attgtgctaa atgtgccagc tgctgatttg
     4021 ctgcagtaca acagggccca agtcctatac catgcccttt tcaaccacct gtacacacgg
     4081 gagcaccacc tcattcaggc tgtgctcctg tgtctgctgg atttattccc catcctggag
     4141 aaagccctgc actggaaggg agatgcagcc cgacccacca cacactgtga cgaggtcctg
     4201 cagctgatcc tgatgcacat ggagcctgag caccgccttc tcttacgcag gacttacgca
     4261 agaaacctac cggctttcgt gaagaggttg gggatcttaa ctgtccggca cttgaagagg
     4321 ctggatcgag tcatcattgg ttatctggag gtttatgatg gacccgagga ggaggctaga
     4381 ttgaagatat tggaagccct aaaacttctc atgcagtata cttggcccag gtatgacagc
     4441 cagcagacag gtgtgctaag aggggcaaaa ctcagccgat actcccttca gaacttgccc
     4501 aggtgtacat tcagtacaaa gtattaagga cgtgccatat atttgaatac ctcctgtttt
     4561 tccataccaa ttggattttg aactgtgaaa gtggcattga agatataata tagtcagttc
     4621 cttcaggtgt acatttctct ggatttataa tgcatattag aattttaaag gccatttagc
     4681 agtgctacag tagacgtact taactttgtt caccataatg tttcttaaat ctgatagaga
     4741 atggagcact catagcacat cactgaacat ctgtggtaat cagaatactg atctgggata
     4801 tatttgctta gcattccaac tctggctcga ggtaggtgtc ccgaacagca agctggaacc
     4861 caaacatgtt gggtctgcag aaggctctct tgcatgaaat gtttaattca gcgagagtcc
     4921 agtgcctcag caatacgtgg gtgtctctgt tctgagccgt attctctcat ctcctcataa
     4981 tgtaccccac agtcacattt gtaacgaggt tgcatttatt tgcttactgt ctttctcctc
     5041 tactgaacta gaagctccag gatggaagac tgaccacttg agtacactga gaactccaga
     5101 acttactcag aacctgagtt ccctgtagac ttgtggtctt actgaaggct ctcttgaaac
     5161 tgatatgtga tgtagcaagg gattcaagcc tcacacccga atctgttaag agtgccttgt
     5221 tagaagaggc cactgactgc ctgattctcc tggaccgctg ctctgaagga caggtgaagg
     5281 gtctcctggc taaaattccc caaagctgtg aagacagtaa ggtggggaac tatatccgaa
     5341 gagtgcagca ggtttctgaa ggagctccct acaatgcaac ttaagacttg tattactttc
     5401 ctgaagagga aaagattttc tttcttttcc aattgtttta aatggaatca tttcaggaaa
     5461 aaggtatatt tatattaaac attataact
//
LOCUS       XM_032618641            4267 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fucosyltransferase 10 (FUT10), transcript
            variant X1, mRNA.
ACCESSION   XM_032618641
VERSION     XM_032618641.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4267
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4267
                     /gene="FUT10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746878"
     CDS             665..2125
                     /gene="FUT10"
                     /codon_start=1
                     /product="alpha-(1,3)-fucosyltransferase 10 isoform X1"
                     /protein_id="XP_032474532.1"
                     /db_xref="GeneID:116746878"
                     /translation="MVRIQRRKLLASCLCITATVFLLVTLQVVVELGKFERKKFKNSN
                     LNDGHAQMEEEPIHLHPFLKREGLTLNRKKTLAADNYPIMLWWSPLTGETGRLGQCGA
                     DTCFFTINRTYLHHHRTKAFLFYGTDFNIDSLPLPRKAHHDWALFHEESPKNNYKLFH
                     QPVITLFNYTATFSRHSHLPLTTQYLEGTEVLKSLRYLVPLQSKNHLRKSLAPLVYVQ
                     SDCDPPSDRDSYVRELMTYIEVDSYGECLRNKALPQQLNGPASMDAGDFYRILAQYKF
                     ILAFENAVCDDYVTEKFWRPLKLGVVPVYYGSPSIADWLPSNRSAILVSEFSHPRELA
                     SYIRQLDHDDRLYQAYIEWKLKGEISNQRLLTALRERKWGVQDIKQDNYIDAFECMVC
                     TKVWDNIRLQEKGLPLKRWKADITHLSCPEPTAFAFSPLAPRRSSLREMWIPSFQQSK
                     KEAQALRNENALGTQREYRIMSCDWNEKDLILVPTL"
     misc_feature    911..1195
                     /gene="FUT10"
                     /note="Fucosyltransferase, N-terminal; Region:
                     Glyco_tran_10_N; pfam17039"
                     /db_xref="CDD:465336"
     misc_feature    1319..>1726
                     /gene="FUT10"
                     /note="Glycosyltransferase family 10 (fucosyltransferase)
                     C-term; Region: Glyco_transf_10; pfam00852"
                     /db_xref="CDD:459962"
ORIGIN      
        1 ggaaatagtg tgtgttttca gtatgattta ctataacact ccgtccctgc tcaccaccaa
       61 caggtgactt tgaaggagct ccactcttag agtttgagaa gcagaagaaa gagggtctca
      121 ggagcctccc aggaacttga gagggttgcg cgccccggac tggcaagtga ggggcggggg
      181 tgtgtttctg cagaaccgag gcgccgcagg cttttaaatg gggcatccat gaaaacccgg
      241 atccaggatc gctgggcctg gacgcgccga gggttatccc ctttcccaaa tctcctctcc
      301 gagtcttcgc ctgaactccg gccgggcgca aactgaaagt gaaaaaccgc ggggctgcag
      361 ccggccgtgg gagcctactt ctccgtgacg agattttttt tgatgccttc tggtttaaag
      421 aaactccagc tgctctgatg atcgcttaag aagactgcat gctgttccct ttcaatgcca
      481 agccaggccc actcagaacc tcagttctca gtcctccatg gagaccaggt cccagcagga
      541 atggcagtgg aggaaattgg cacccagatg gttcctccac gtgaagttgt cttgggctgc
      601 gggccgactc gagaacacct ggtaaccagg ctagccctct gtcagtcacc cagggcaggg
      661 cagcatggtg cggattcaga ggaggaagct tctggcatct tgcctgtgca tcacagccac
      721 tgtctttctg ctcgtcacac tccaggtagt ggttgagctg ggaaaatttg aaaggaagaa
      781 gtttaaaaat tctaatttga acgacggaca tgcacaaatg gaagaagagc ctatacatct
      841 ccatccattc cttaagagag aaggactgac cctgaatagg aaaaaaacat tggcagctga
      901 taactacccc atcatgctct ggtggtcccc actgactggg gaaactggaa ggctaggcca
      961 gtgcggggca gacacttgtt tcttcaccat caaccggacc tacctccatc atcacaggac
     1021 caaagccttc ctcttctatg gtactgactt taacatagat agcttacctc tgcctcggaa
     1081 agcccatcac gactgggccc tttttcatga agagtctccg aaaaacaatt ataagctctt
     1141 tcaccagcca gtcatcacct tgttcaacta cacggccacc ttcagccggc attcccacct
     1201 gccactaact acccagtacc tggagggcac agaagtcctg aagtcactcc gatacctggt
     1261 ccccttgcag tccaaaaacc acctccggaa aagcctcgct cctctggtgt acgtacagtc
     1321 cgactgtgac ccaccctcag acagagacag ctacgttcga gagctgatga cgtacatcga
     1381 ggtcgattct tacggcgagt gtttgcgaaa caaagctctg cctcagcagc tgaacggtcc
     1441 agcctctatg gacgctggtg acttttatag gatccttgcc cagtataagt ttatccttgc
     1501 tttcgagaac gcggtttgcg atgactacgt cactgagaag ttctggagac ctctgaaact
     1561 gggggtcgtc cctgtgtatt acggatcacc cagcatcgca gactggcttc caagtaatag
     1621 aagtgctatc ctggtatcag aattttctca ccctagagaa ctggcaagtt acatcagaca
     1681 gctggatcac gacgacagac tgtaccaggc ctacatagaa tggaagctga agggtgagat
     1741 ctcgaatcag cgacttctca ctgctctcag ggaacggaaa tggggggtgc aggacatcaa
     1801 gcaggacaac tacatcgacg catttgagtg tatggtgtgc accaaggtgt gggataacat
     1861 taggctccag gaaaagggct taccactcaa acgatggaag gcagacatta cccacctgag
     1921 ctgtccagag cctacagcat ttgctttctc acccctcgcc ccacgtcgga gctctttgcg
     1981 agagatgtgg ataccaagct tccaacaatc caagaaagaa gcccaagcac taaggaatga
     2041 aaatgcttta ggaactcaga gggaatatag aattatgagc tgtgactgga atgagaaaga
     2101 cctgatttta gtccctactc tttgatgtac catctttatt accttggtca agttattcga
     2161 ccttttaaag ctgtatcttg ttcatgtgtc atgtttgctc cctgtgaggt tgttgtgatg
     2221 attaagtaag cttgtgttca tacttctctc agtaaatgcg agctgtagtt gttccagcta
     2281 tctgtggcca tcacccttct gtttgtgaag acccgggttg agattggttc aggaaaaggg
     2341 aatgactaat gattggacca gggatggtac ccttttgttc tttgtttagt tgtttcaaac
     2401 atatttattg ttatgagatg ggcattgtgg taggcgctgt agcagataca agcaggacaa
     2461 tggagaaagg tgtgaggggc attgtgatac gcggatggta ttaaaaccag ggacagagga
     2521 aggcttgaat tgtgctataa ctgtctctcc cttccgtggg atttcagatg gagttttaca
     2581 caaagttccc aagagcataa tgaaactcag caacctcttt atagtagctg tgcaaaccca
     2641 aataaaccca gtgcaatgaa ctctggtaaa agctggattt gaacatataa tttagatttg
     2701 aagcctaagg agcatctttt atggcctttc tgtttctcaa ttctcagtct taggaccagc
     2761 ctgttcaatg tgccaagaga aaggagagaa agtctgtagg tcctcaccct gcttcctcat
     2821 taaccaagga tcaaaacagg aataaaagag ggggaaacct cttaggagac aagccctctt
     2881 tgctctccac ttgctatgga tgcaagaata tggggtgcgt tgcatgagag ctcccttttg
     2941 agtcatagta acctctctga ctagtaaatg tgacctcatc aatatcctgg gcccaaccca
     3001 ttaaattagt gaccccgttg ctgctggtgg aagggggatt attaaggact tgggcaggat
     3061 gcaaggtgtg agaaggagca ggagtgaccc tccatgattt ttgtcctctc aactcagtgg
     3121 gcttaactgc caagcctggg gtcagtcaga ggtggactgt atccccagga gggtatgacc
     3181 tatcatgatc aacagagacc tcctttcacc tttctgggct tcttccctga taactaccct
     3241 tgctctgcgg tatccccctg gagccagtgc catgcgccgt tcagctcttt gtctcttgaa
     3301 gcttctgaaa tgaatcagga ctgaacgttg atcaatgtct ccaggagaat tgtggacatt
     3361 aagtcaaaaa tttgttccct attttatttc ccattgcaaa ccatgactta cttcatcatc
     3421 cagctttgct ccccggagga ggttatacaa ccagccccaa taggccatta ggaatacttg
     3481 gaattttact atcacaaact ccttaattaa aaaaaacact gattgagtag gtaattaaag
     3541 attttagaga ctatcagtgt aggtagctgg tgccgttaat ggttttaagg caagggcagt
     3601 atcccaggag cctttggaat gagcctcaca tagatcgctt cgtatgtata cagagtaaac
     3661 gtgactgcag actcatctgg tgagtcacac tcacagaaaa ataaagccag tttacttaat
     3721 gatgtccttg atgaagtaat aaaaatgact aactttataa aaccttgacc ttcgagtata
     3781 tgtcttttta atattctatg tgataaaatg gggcgtatat ataaggcatg tctgctgcac
     3841 accaaagcac aatgggaatc tcaaagaaaa gcactgtgtg attgtttgag ttgtgagcta
     3901 aactttttcc tggaaaacca tttttgctca aaagagtgtc tggcaaactg tgggtagttc
     3961 agtgatgggt ttttgtcagt catcttcatg gaaatgtagt gagcctgtca ctttaagaga
     4021 accaatagac tttgttgcca atgataaaat ttcagctttc aaatgaaaat taaaattttg
     4081 gaaaactaat ttccaccact tcgaacttga caacctcctg attcttgaga ctttcctgat
     4141 gagactaaca aatgttactt ttgacattga atggaaacag aggtgatgac gtgtaaagga
     4201 atttttattt ttattttttt taggtaagaa gtggatttat ttagagagaa acacactcca
     4261 cagatag
//
LOCUS       XM_032618642            3979 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fucosyltransferase 10 (FUT10), transcript
            variant X2, mRNA.
ACCESSION   XM_032618642
VERSION     XM_032618642.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3979
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3979
                     /gene="FUT10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746878"
     CDS             377..1837
                     /gene="FUT10"
                     /codon_start=1
                     /product="alpha-(1,3)-fucosyltransferase 10 isoform X1"
                     /protein_id="XP_032474533.1"
                     /db_xref="GeneID:116746878"
                     /translation="MVRIQRRKLLASCLCITATVFLLVTLQVVVELGKFERKKFKNSN
                     LNDGHAQMEEEPIHLHPFLKREGLTLNRKKTLAADNYPIMLWWSPLTGETGRLGQCGA
                     DTCFFTINRTYLHHHRTKAFLFYGTDFNIDSLPLPRKAHHDWALFHEESPKNNYKLFH
                     QPVITLFNYTATFSRHSHLPLTTQYLEGTEVLKSLRYLVPLQSKNHLRKSLAPLVYVQ
                     SDCDPPSDRDSYVRELMTYIEVDSYGECLRNKALPQQLNGPASMDAGDFYRILAQYKF
                     ILAFENAVCDDYVTEKFWRPLKLGVVPVYYGSPSIADWLPSNRSAILVSEFSHPRELA
                     SYIRQLDHDDRLYQAYIEWKLKGEISNQRLLTALRERKWGVQDIKQDNYIDAFECMVC
                     TKVWDNIRLQEKGLPLKRWKADITHLSCPEPTAFAFSPLAPRRSSLREMWIPSFQQSK
                     KEAQALRNENALGTQREYRIMSCDWNEKDLILVPTL"
     misc_feature    623..907
                     /gene="FUT10"
                     /note="Fucosyltransferase, N-terminal; Region:
                     Glyco_tran_10_N; pfam17039"
                     /db_xref="CDD:465336"
     misc_feature    1031..>1438
                     /gene="FUT10"
                     /note="Glycosyltransferase family 10 (fucosyltransferase)
                     C-term; Region: Glyco_transf_10; pfam00852"
                     /db_xref="CDD:459962"
ORIGIN      
        1 ctaaaatgtg ttttgttttg tttttagata aaaaatgttg cacaacgtaa aagctgagaa
       61 ttatgcttta ttggaggaca ttagtgagga actgttgcaa agagattttt tttgatgcct
      121 tctggtttaa agaaactcca gctgctctga tgatcgctta agaagactgc atgctgttcc
      181 ctttcaatgc caagccaggc ccactcagaa cctcagttct cagtcctcca tggagaccag
      241 gtcccagcag gaatggcagt ggaggaaatt ggcacccaga tggttcctcc acgtgaagtt
      301 gtcttgggct gcgggccgac tcgagaacac ctggtaacca ggctagccct ctgtcagtca
      361 cccagggcag ggcagcatgg tgcggattca gaggaggaag cttctggcat cttgcctgtg
      421 catcacagcc actgtctttc tgctcgtcac actccaggta gtggttgagc tgggaaaatt
      481 tgaaaggaag aagtttaaaa attctaattt gaacgacgga catgcacaaa tggaagaaga
      541 gcctatacat ctccatccat tccttaagag agaaggactg accctgaata ggaaaaaaac
      601 attggcagct gataactacc ccatcatgct ctggtggtcc ccactgactg gggaaactgg
      661 aaggctaggc cagtgcgggg cagacacttg tttcttcacc atcaaccgga cctacctcca
      721 tcatcacagg accaaagcct tcctcttcta tggtactgac tttaacatag atagcttacc
      781 tctgcctcgg aaagcccatc acgactgggc cctttttcat gaagagtctc cgaaaaacaa
      841 ttataagctc tttcaccagc cagtcatcac cttgttcaac tacacggcca ccttcagccg
      901 gcattcccac ctgccactaa ctacccagta cctggagggc acagaagtcc tgaagtcact
      961 ccgatacctg gtccccttgc agtccaaaaa ccacctccgg aaaagcctcg ctcctctggt
     1021 gtacgtacag tccgactgtg acccaccctc agacagagac agctacgttc gagagctgat
     1081 gacgtacatc gaggtcgatt cttacggcga gtgtttgcga aacaaagctc tgcctcagca
     1141 gctgaacggt ccagcctcta tggacgctgg tgacttttat aggatccttg cccagtataa
     1201 gtttatcctt gctttcgaga acgcggtttg cgatgactac gtcactgaga agttctggag
     1261 acctctgaaa ctgggggtcg tccctgtgta ttacggatca cccagcatcg cagactggct
     1321 tccaagtaat agaagtgcta tcctggtatc agaattttct caccctagag aactggcaag
     1381 ttacatcaga cagctggatc acgacgacag actgtaccag gcctacatag aatggaagct
     1441 gaagggtgag atctcgaatc agcgacttct cactgctctc agggaacgga aatggggggt
     1501 gcaggacatc aagcaggaca actacatcga cgcatttgag tgtatggtgt gcaccaaggt
     1561 gtgggataac attaggctcc aggaaaaggg cttaccactc aaacgatgga aggcagacat
     1621 tacccacctg agctgtccag agcctacagc atttgctttc tcacccctcg ccccacgtcg
     1681 gagctctttg cgagagatgt ggataccaag cttccaacaa tccaagaaag aagcccaagc
     1741 actaaggaat gaaaatgctt taggaactca gagggaatat agaattatga gctgtgactg
     1801 gaatgagaaa gacctgattt tagtccctac tctttgatgt accatcttta ttaccttggt
     1861 caagttattc gaccttttaa agctgtatct tgttcatgtg tcatgtttgc tccctgtgag
     1921 gttgttgtga tgattaagta agcttgtgtt catacttctc tcagtaaatg cgagctgtag
     1981 ttgttccagc tatctgtggc catcaccctt ctgtttgtga agacccgggt tgagattggt
     2041 tcaggaaaag ggaatgacta atgattggac cagggatggt acccttttgt tctttgttta
     2101 gttgtttcaa acatatttat tgttatgaga tgggcattgt ggtaggcgct gtagcagata
     2161 caagcaggac aatggagaaa ggtgtgaggg gcattgtgat acgcggatgg tattaaaacc
     2221 agggacagag gaaggcttga attgtgctat aactgtctct cccttccgtg ggatttcaga
     2281 tggagtttta cacaaagttc ccaagagcat aatgaaactc agcaacctct ttatagtagc
     2341 tgtgcaaacc caaataaacc cagtgcaatg aactctggta aaagctggat ttgaacatat
     2401 aatttagatt tgaagcctaa ggagcatctt ttatggcctt tctgtttctc aattctcagt
     2461 cttaggacca gcctgttcaa tgtgccaaga gaaaggagag aaagtctgta ggtcctcacc
     2521 ctgcttcctc attaaccaag gatcaaaaca ggaataaaag agggggaaac ctcttaggag
     2581 acaagccctc tttgctctcc acttgctatg gatgcaagaa tatggggtgc gttgcatgag
     2641 agctcccttt tgagtcatag taacctctct gactagtaaa tgtgacctca tcaatatcct
     2701 gggcccaacc cattaaatta gtgaccccgt tgctgctggt ggaaggggga ttattaagga
     2761 cttgggcagg atgcaaggtg tgagaaggag caggagtgac cctccatgat ttttgtcctc
     2821 tcaactcagt gggcttaact gccaagcctg gggtcagtca gaggtggact gtatccccag
     2881 gagggtatga cctatcatga tcaacagaga cctcctttca cctttctggg cttcttccct
     2941 gataactacc cttgctctgc ggtatccccc tggagccagt gccatgcgcc gttcagctct
     3001 ttgtctcttg aagcttctga aatgaatcag gactgaacgt tgatcaatgt ctccaggaga
     3061 attgtggaca ttaagtcaaa aatttgttcc ctattttatt tcccattgca aaccatgact
     3121 tacttcatca tccagctttg ctccccggag gaggttatac aaccagcccc aataggccat
     3181 taggaatact tggaatttta ctatcacaaa ctccttaatt aaaaaaaaca ctgattgagt
     3241 aggtaattaa agattttaga gactatcagt gtaggtagct ggtgccgtta atggttttaa
     3301 ggcaagggca gtatcccagg agcctttgga atgagcctca catagatcgc ttcgtatgta
     3361 tacagagtaa acgtgactgc agactcatct ggtgagtcac actcacagaa aaataaagcc
     3421 agtttactta atgatgtcct tgatgaagta ataaaaatga ctaactttat aaaaccttga
     3481 ccttcgagta tatgtctttt taatattcta tgtgataaaa tggggcgtat atataaggca
     3541 tgtctgctgc acaccaaagc acaatgggaa tctcaaagaa aagcactgtg tgattgtttg
     3601 agttgtgagc taaacttttt cctggaaaac catttttgct caaaagagtg tctggcaaac
     3661 tgtgggtagt tcagtgatgg gtttttgtca gtcatcttca tggaaatgta gtgagcctgt
     3721 cactttaaga gaaccaatag actttgttgc caatgataaa atttcagctt tcaaatgaaa
     3781 attaaaattt tggaaaacta atttccacca cttcgaactt gacaacctcc tgattcttga
     3841 gactttcctg atgagactaa caaatgttac ttttgacatt gaatggaaac agaggtgatg
     3901 acgtgtaaag gaatttttat ttttattttt tttaggtaag aagtggattt atttagagag
     3961 aaacacactc cacagatag
//
LOCUS       XM_032618643            2271 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fucosyltransferase 10 (FUT10), transcript
            variant X3, mRNA.
ACCESSION   XM_032618643
VERSION     XM_032618643.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2271
                     /gene="FUT10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746878"
     CDS             665..2101
                     /gene="FUT10"
                     /codon_start=1
                     /product="alpha-(1,3)-fucosyltransferase 10 isoform X2"
                     /protein_id="XP_032474534.1"
                     /db_xref="GeneID:116746878"
                     /translation="MVRIQRRKLLASCLCITATVFLLVTLQVVVELGKFERKKFKNSN
                     LNDGHAQMEEEPIHLHPFLKREGLTLNRKKTLAADNYPIMLWWSPLTGETGRLGQCGA
                     DTCFFTINRTYLHHHRTKAFLFYGTDFNIDSLPLPRKAHHDWALFHEESPKNNYKLFH
                     QPVITLFNYTATFSRHSHLPLTTQYLEGTEVLKSLRYLVPLQSKNHLRKSLAPLVYVQ
                     SDCDPPSDRDSYVRELMTYIEVDSYGECLRNKALPQQLNGPASMDAGDFYRILAQYKF
                     ILAFENAVCDDYVTEKFWRPLKLGVVPVYYGSPSIADWLPSNRSAILVSEFSHPRELA
                     SYIRQLDHDDRLYQAYIEWKLKGEISNQRLLTALRERKWGVQDIKQDNYIDAFECMVC
                     TKVWDNIRLQEKGLPLKRWKADITHLSCPEPTAFAFSPLAPRRSSLREMWIPSFQQSK
                     KEAQALRWLVDRNQNFSTQEFWALVFKD"
     misc_feature    911..1195
                     /gene="FUT10"
                     /note="Fucosyltransferase, N-terminal; Region:
                     Glyco_tran_10_N; pfam17039"
                     /db_xref="CDD:465336"
     misc_feature    1319..>1726
                     /gene="FUT10"
                     /note="Glycosyltransferase family 10 (fucosyltransferase)
                     C-term; Region: Glyco_transf_10; pfam00852"
                     /db_xref="CDD:459962"
ORIGIN      
        1 ggaaatagtg tgtgttttca gtatgattta ctataacact ccgtccctgc tcaccaccaa
       61 caggtgactt tgaaggagct ccactcttag agtttgagaa gcagaagaaa gagggtctca
      121 ggagcctccc aggaacttga gagggttgcg cgccccggac tggcaagtga ggggcggggg
      181 tgtgtttctg cagaaccgag gcgccgcagg cttttaaatg gggcatccat gaaaacccgg
      241 atccaggatc gctgggcctg gacgcgccga gggttatccc ctttcccaaa tctcctctcc
      301 gagtcttcgc ctgaactccg gccgggcgca aactgaaagt gaaaaaccgc ggggctgcag
      361 ccggccgtgg gagcctactt ctccgtgacg agattttttt tgatgccttc tggtttaaag
      421 aaactccagc tgctctgatg atcgcttaag aagactgcat gctgttccct ttcaatgcca
      481 agccaggccc actcagaacc tcagttctca gtcctccatg gagaccaggt cccagcagga
      541 atggcagtgg aggaaattgg cacccagatg gttcctccac gtgaagttgt cttgggctgc
      601 gggccgactc gagaacacct ggtaaccagg ctagccctct gtcagtcacc cagggcaggg
      661 cagcatggtg cggattcaga ggaggaagct tctggcatct tgcctgtgca tcacagccac
      721 tgtctttctg ctcgtcacac tccaggtagt ggttgagctg ggaaaatttg aaaggaagaa
      781 gtttaaaaat tctaatttga acgacggaca tgcacaaatg gaagaagagc ctatacatct
      841 ccatccattc cttaagagag aaggactgac cctgaatagg aaaaaaacat tggcagctga
      901 taactacccc atcatgctct ggtggtcccc actgactggg gaaactggaa ggctaggcca
      961 gtgcggggca gacacttgtt tcttcaccat caaccggacc tacctccatc atcacaggac
     1021 caaagccttc ctcttctatg gtactgactt taacatagat agcttacctc tgcctcggaa
     1081 agcccatcac gactgggccc tttttcatga agagtctccg aaaaacaatt ataagctctt
     1141 tcaccagcca gtcatcacct tgttcaacta cacggccacc ttcagccggc attcccacct
     1201 gccactaact acccagtacc tggagggcac agaagtcctg aagtcactcc gatacctggt
     1261 ccccttgcag tccaaaaacc acctccggaa aagcctcgct cctctggtgt acgtacagtc
     1321 cgactgtgac ccaccctcag acagagacag ctacgttcga gagctgatga cgtacatcga
     1381 ggtcgattct tacggcgagt gtttgcgaaa caaagctctg cctcagcagc tgaacggtcc
     1441 agcctctatg gacgctggtg acttttatag gatccttgcc cagtataagt ttatccttgc
     1501 tttcgagaac gcggtttgcg atgactacgt cactgagaag ttctggagac ctctgaaact
     1561 gggggtcgtc cctgtgtatt acggatcacc cagcatcgca gactggcttc caagtaatag
     1621 aagtgctatc ctggtatcag aattttctca ccctagagaa ctggcaagtt acatcagaca
     1681 gctggatcac gacgacagac tgtaccaggc ctacatagaa tggaagctga agggtgagat
     1741 ctcgaatcag cgacttctca ctgctctcag ggaacggaaa tggggggtgc aggacatcaa
     1801 gcaggacaac tacatcgacg catttgagtg tatggtgtgc accaaggtgt gggataacat
     1861 taggctccag gaaaagggct taccactcaa acgatggaag gcagacatta cccacctgag
     1921 ctgtccagag cctacagcat ttgctttctc acccctcgcc ccacgtcgga gctctttgcg
     1981 agagatgtgg ataccaagct tccaacaatc caagaaagaa gcccaagcac taaggtggct
     2041 ggttgatagg aatcaaaact tttcaactca agagttttgg gccctagtat tcaaggacta
     2101 atatcagaaa gtgtcagagt tctattttct aggttgcctt gatatctgaa tataatagct
     2161 gctctgtgga cagcccacta ggatgagaat taatgggtgc agtactcata atgagctcta
     2221 ttgaataata gatatgagtt acccctaggg gtcacttctc tgttttttat a
//
LOCUS       XM_032618644            3437 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fucosyltransferase 10 (FUT10), transcript
            variant X4, mRNA.
ACCESSION   XM_032618644
VERSION     XM_032618644.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3437
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3437
                     /gene="FUT10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 4
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746878"
     CDS             665..2056
                     /gene="FUT10"
                     /codon_start=1
                     /product="alpha-(1,3)-fucosyltransferase 10 isoform X3"
                     /protein_id="XP_032474535.1"
                     /db_xref="GeneID:116746878"
                     /translation="MVRIQRRKLLASCLCITATVFLLVTLQVVVELGKFERKKFKNSN
                     LNDGHAQMEEEPIHLHPFLKREGLTLNRKKTLAADNYPIMLWWSPLTGETGRLGQCGA
                     DTCFFTINRTYLHHHRTKAFLFYGTDFNIDSLPLPRKAHHDWALFHEESPKNNYKLFH
                     QPVITLFNYTATFSRHSHLPLTTQYLEGTEVLKSLRYLVPLQSKNHLRKSLAPLVYVQ
                     SDCDPPSDRDSYVRELMTYIEVDSYGECLRNKALPQQLNGPASMDAGDFYRILAQYKF
                     ILAFENAVCDDYVTEKFWRPLKLGVVPVYYGSPSIADWLPSNRSAILVSEFSHPRELA
                     SYIRQLDHDDRLYQAYIEWKLKGEISNQRLLTALRERKWGVQDIKQDNYIDAFECMVC
                     TKVWDNIRLQEKGLPLKRWKADITHLSCPEPTAFAFSPLAPRRSSLREMWIPSFQQSK
                     KEAQALRKSPKRK"
     misc_feature    911..1195
                     /gene="FUT10"
                     /note="Fucosyltransferase, N-terminal; Region:
                     Glyco_tran_10_N; pfam17039"
                     /db_xref="CDD:465336"
     misc_feature    1319..>1726
                     /gene="FUT10"
                     /note="Glycosyltransferase family 10 (fucosyltransferase)
                     C-term; Region: Glyco_transf_10; pfam00852"
                     /db_xref="CDD:459962"
ORIGIN      
        1 ggaaatagtg tgtgttttca gtatgattta ctataacact ccgtccctgc tcaccaccaa
       61 caggtgactt tgaaggagct ccactcttag agtttgagaa gcagaagaaa gagggtctca
      121 ggagcctccc aggaacttga gagggttgcg cgccccggac tggcaagtga ggggcggggg
      181 tgtgtttctg cagaaccgag gcgccgcagg cttttaaatg gggcatccat gaaaacccgg
      241 atccaggatc gctgggcctg gacgcgccga gggttatccc ctttcccaaa tctcctctcc
      301 gagtcttcgc ctgaactccg gccgggcgca aactgaaagt gaaaaaccgc ggggctgcag
      361 ccggccgtgg gagcctactt ctccgtgacg agattttttt tgatgccttc tggtttaaag
      421 aaactccagc tgctctgatg atcgcttaag aagactgcat gctgttccct ttcaatgcca
      481 agccaggccc actcagaacc tcagttctca gtcctccatg gagaccaggt cccagcagga
      541 atggcagtgg aggaaattgg cacccagatg gttcctccac gtgaagttgt cttgggctgc
      601 gggccgactc gagaacacct ggtaaccagg ctagccctct gtcagtcacc cagggcaggg
      661 cagcatggtg cggattcaga ggaggaagct tctggcatct tgcctgtgca tcacagccac
      721 tgtctttctg ctcgtcacac tccaggtagt ggttgagctg ggaaaatttg aaaggaagaa
      781 gtttaaaaat tctaatttga acgacggaca tgcacaaatg gaagaagagc ctatacatct
      841 ccatccattc cttaagagag aaggactgac cctgaatagg aaaaaaacat tggcagctga
      901 taactacccc atcatgctct ggtggtcccc actgactggg gaaactggaa ggctaggcca
      961 gtgcggggca gacacttgtt tcttcaccat caaccggacc tacctccatc atcacaggac
     1021 caaagccttc ctcttctatg gtactgactt taacatagat agcttacctc tgcctcggaa
     1081 agcccatcac gactgggccc tttttcatga agagtctccg aaaaacaatt ataagctctt
     1141 tcaccagcca gtcatcacct tgttcaacta cacggccacc ttcagccggc attcccacct
     1201 gccactaact acccagtacc tggagggcac agaagtcctg aagtcactcc gatacctggt
     1261 ccccttgcag tccaaaaacc acctccggaa aagcctcgct cctctggtgt acgtacagtc
     1321 cgactgtgac ccaccctcag acagagacag ctacgttcga gagctgatga cgtacatcga
     1381 ggtcgattct tacggcgagt gtttgcgaaa caaagctctg cctcagcagc tgaacggtcc
     1441 agcctctatg gacgctggtg acttttatag gatccttgcc cagtataagt ttatccttgc
     1501 tttcgagaac gcggtttgcg atgactacgt cactgagaag ttctggagac ctctgaaact
     1561 gggggtcgtc cctgtgtatt acggatcacc cagcatcgca gactggcttc caagtaatag
     1621 aagtgctatc ctggtatcag aattttctca ccctagagaa ctggcaagtt acatcagaca
     1681 gctggatcac gacgacagac tgtaccaggc ctacatagaa tggaagctga agggtgagat
     1741 ctcgaatcag cgacttctca ctgctctcag ggaacggaaa tggggggtgc aggacatcaa
     1801 gcaggacaac tacatcgacg catttgagtg tatggtgtgc accaaggtgt gggataacat
     1861 taggctccag gaaaagggct taccactcaa acgatggaag gcagacatta cccacctgag
     1921 ctgtccagag cctacagcat ttgctttctc acccctcgcc ccacgtcgga gctctttgcg
     1981 agagatgtgg ataccaagct tccaacaatc caagaaagaa gcccaagcac taaggaaatc
     2041 cccaaagagg aaatgagatg ttgcaggctt tgggctttgg ggactgactc acgagagaga
     2101 tacatttcaa cagcctaaaa attgctcttc ttggcttctg aggacatgca gccaagccaa
     2161 ggtgagcccc ccttcctcct tctgtctgca gctggctcgg gtgcccggcg tatcaccacc
     2221 cagcacccca gaaccagtgt ttcctaaaca cagccacgtt cctcccctcg acacaggacc
     2281 tctctgctca tgttgcacta gtccgtaaca aactagaggg tcattcacga agggcatgga
     2341 gaacaaggag aaaacaaccc ctaatcttgt gtggactggg aagaatccgt tctggcaggc
     2401 accggacggg gactgctgta gaactcgggg ttgaaacagt ctgatctcag cgctggcagc
     2461 ctctacgatg accttggaaa agaccttgta tcaacctgat cagaacctcc agacaaaaca
     2521 cgtgagttca gccaaacatt tgaatgtttc cgacgttcgc ctgttctcca tcacgtagag
     2581 acagtcttca ttgtgctgga cttcaatttg accctcagaa aagctgttga gaaggggtcc
     2641 ctctctactc ccattctctc ctttccaaca cccccataaa caaattatgg ggacatgatt
     2701 gggtaataca ggtatatcaa gctctcgtcc aatctacata ttacctggaa tacagtggag
     2761 gtgggtttgg gttaatttgg agagcactgg aaagtgacac caagacaggg accttgaagt
     2821 gtcaccagga tttacagatc tttcacaatg ctgttcttcg catatgtact tgctgcttcc
     2881 cagtgaaaca gagaacttgg tctcgggcag tgcccagctt ccctcacatc ttgtgtttac
     2941 atgtgtcaca tatttctgca gggcactgcg cactggggta acagattaat ctgaggtagt
     3001 cattaattgt ttgatgtctg ttatatggga ggataggatg gtgccagggt aagtaatttg
     3061 agaatagcca ggggtgagtg acagcattgc tgttttctca tctcccatgg acttcagacc
     3121 ttccaagtga gcttggcaat tacctaaaaa gaaaggagtg acgtggtttt acccagtggg
     3181 ggctttcatt gtccatttgg gtcccttcgt ttactgcatc tcaaagaaac catgacaacc
     3241 gtatttgtct ccatttcctc tcccctcgat gcttctggct ccatctgttc aatactcacc
     3301 aaggaagtca acatttggtc tcttttctta ttataaacaa aagtacactt atgtgagttc
     3361 attttttgaa gaaacataaa agaaaataaa aacggaaagg ttgtgtttgg cttgataaat
     3421 tgttcaatac cttctct
//
LOCUS       XM_032618645            3249 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fucosyltransferase 10 (FUT10), transcript
            variant X5, mRNA.
ACCESSION   XM_032618645
VERSION     XM_032618645.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3249
                     /gene="FUT10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746878"
     CDS             665..1960
                     /gene="FUT10"
                     /codon_start=1
                     /product="alpha-(1,3)-fucosyltransferase 10 isoform X4"
                     /protein_id="XP_032474536.1"
                     /db_xref="GeneID:116746878"
                     /translation="MVRIQRRKLLASCLCITATVFLLVTLQVVVELGKFERKKFKNSN
                     LNDGHAQMEEEPIHLHPFLKREGLTLNRKKTLAADNYPIMLWWSPLTGETGRLGQCGA
                     DTCFFTINRTYLHHHRTKAFLFYGTDFNIDSLPLPRKAHHDWALFHEESPKNNYKLFH
                     QPVITLFNYTATFSRHSHLPLTTQYLEGTEVLKSLRYLVPLQSKNHLRKSLAPLVYVQ
                     SDCDPPSDRDSYVRELMTYIEVDSYGECLRNKALPQQLNGPASMDAGDFYRILAQYKF
                     ILAFENAVCDDYVTEKFWRPLKLGVVPVYYGSPSIADWLPSNRSAILVSEFSHPRELA
                     SYIRQLDHDDRLYQAYIEWKLKGEISNQRLLTALRERKWGVQDIKQDNYIDAFECMVC
                     TKVWDNIRLQEKEIPKEEMRCCRLWALGTDSRERYISTA"
     misc_feature    911..1195
                     /gene="FUT10"
                     /note="Fucosyltransferase, N-terminal; Region:
                     Glyco_tran_10_N; pfam17039"
                     /db_xref="CDD:465336"
     misc_feature    1319..>1726
                     /gene="FUT10"
                     /note="Glycosyltransferase family 10 (fucosyltransferase)
                     C-term; Region: Glyco_transf_10; pfam00852"
                     /db_xref="CDD:459962"
ORIGIN      
        1 ggaaatagtg tgtgttttca gtatgattta ctataacact ccgtccctgc tcaccaccaa
       61 caggtgactt tgaaggagct ccactcttag agtttgagaa gcagaagaaa gagggtctca
      121 ggagcctccc aggaacttga gagggttgcg cgccccggac tggcaagtga ggggcggggg
      181 tgtgtttctg cagaaccgag gcgccgcagg cttttaaatg gggcatccat gaaaacccgg
      241 atccaggatc gctgggcctg gacgcgccga gggttatccc ctttcccaaa tctcctctcc
      301 gagtcttcgc ctgaactccg gccgggcgca aactgaaagt gaaaaaccgc ggggctgcag
      361 ccggccgtgg gagcctactt ctccgtgacg agattttttt tgatgccttc tggtttaaag
      421 aaactccagc tgctctgatg atcgcttaag aagactgcat gctgttccct ttcaatgcca
      481 agccaggccc actcagaacc tcagttctca gtcctccatg gagaccaggt cccagcagga
      541 atggcagtgg aggaaattgg cacccagatg gttcctccac gtgaagttgt cttgggctgc
      601 gggccgactc gagaacacct ggtaaccagg ctagccctct gtcagtcacc cagggcaggg
      661 cagcatggtg cggattcaga ggaggaagct tctggcatct tgcctgtgca tcacagccac
      721 tgtctttctg ctcgtcacac tccaggtagt ggttgagctg ggaaaatttg aaaggaagaa
      781 gtttaaaaat tctaatttga acgacggaca tgcacaaatg gaagaagagc ctatacatct
      841 ccatccattc cttaagagag aaggactgac cctgaatagg aaaaaaacat tggcagctga
      901 taactacccc atcatgctct ggtggtcccc actgactggg gaaactggaa ggctaggcca
      961 gtgcggggca gacacttgtt tcttcaccat caaccggacc tacctccatc atcacaggac
     1021 caaagccttc ctcttctatg gtactgactt taacatagat agcttacctc tgcctcggaa
     1081 agcccatcac gactgggccc tttttcatga agagtctccg aaaaacaatt ataagctctt
     1141 tcaccagcca gtcatcacct tgttcaacta cacggccacc ttcagccggc attcccacct
     1201 gccactaact acccagtacc tggagggcac agaagtcctg aagtcactcc gatacctggt
     1261 ccccttgcag tccaaaaacc acctccggaa aagcctcgct cctctggtgt acgtacagtc
     1321 cgactgtgac ccaccctcag acagagacag ctacgttcga gagctgatga cgtacatcga
     1381 ggtcgattct tacggcgagt gtttgcgaaa caaagctctg cctcagcagc tgaacggtcc
     1441 agcctctatg gacgctggtg acttttatag gatccttgcc cagtataagt ttatccttgc
     1501 tttcgagaac gcggtttgcg atgactacgt cactgagaag ttctggagac ctctgaaact
     1561 gggggtcgtc cctgtgtatt acggatcacc cagcatcgca gactggcttc caagtaatag
     1621 aagtgctatc ctggtatcag aattttctca ccctagagaa ctggcaagtt acatcagaca
     1681 gctggatcac gacgacagac tgtaccaggc ctacatagaa tggaagctga agggtgagat
     1741 ctcgaatcag cgacttctca ctgctctcag ggaacggaaa tggggggtgc aggacatcaa
     1801 gcaggacaac tacatcgacg catttgagtg tatggtgtgc accaaggtgt gggataacat
     1861 taggctccag gaaaaggaaa tccccaaaga ggaaatgaga tgttgcaggc tttgggcttt
     1921 ggggactgac tcacgagaga gatacatttc aacagcctaa aaattgctct tcttggcttc
     1981 tgaggacatg cagccaagcc aaggtgagcc ccccttcctc cttctgtctg cagctggctc
     2041 gggtgcccgg cgtatcacca cccagcaccc cagaaccagt gtttcctaaa cacagccacg
     2101 ttcctcccct cgacacagga cctctctgct catgttgcac tagtccgtaa caaactagag
     2161 ggtcattcac gaagggcatg gagaacaagg agaaaacaac ccctaatctt gtgtggactg
     2221 ggaagaatcc gttctggcag gcaccggacg gggactgctg tagaactcgg ggttgaaaca
     2281 gtctgatctc agcgctggca gcctctacga tgaccttgga aaagaccttg tatcaacctg
     2341 atcagaacct ccagacaaaa cacgtgagtt cagccaaaca tttgaatgtt tccgacgttc
     2401 gcctgttctc catcacgtag agacagtctt cattgtgctg gacttcaatt tgaccctcag
     2461 aaaagctgtt gagaaggggt ccctctctac tcccattctc tcctttccaa cacccccata
     2521 aacaaattat ggggacatga ttgggtaata caggtatatc aagctctcgt ccaatctaca
     2581 tattacctgg aatacagtgg aggtgggttt gggttaattt ggagagcact ggaaagtgac
     2641 accaagacag ggaccttgaa gtgtcaccag gatttacaga tctttcacaa tgctgttctt
     2701 cgcatatgta cttgctgctt cccagtgaaa cagagaactt ggtctcgggc agtgcccagc
     2761 ttccctcaca tcttgtgttt acatgtgtca catatttctg cagggcactg cgcactgggg
     2821 taacagatta atctgaggta gtcattaatt gtttgatgtc tgttatatgg gaggatagga
     2881 tggtgccagg gtaagtaatt tgagaatagc caggggtgag tgacagcatt gctgttttct
     2941 catctcccat ggacttcaga ccttccaagt gagcttggca attacctaaa aagaaaggag
     3001 tgacgtggtt ttacccagtg ggggctttca ttgtccattt gggtcccttc gtttactgca
     3061 tctcaaagaa accatgacaa ccgtatttgt ctccatttcc tctcccctcg atgcttctgg
     3121 ctccatctgt tcaatactca ccaaggaagt caacatttgg tctcttttct tattataaac
     3181 aaaagtacac ttatgtgagt tcattttttg aagaaacata aaagaaaata aaaacggaaa
     3241 ggttgtgtt
//
LOCUS       XM_032618647           16797 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus MAK16 homolog (MAK16), mRNA.
ACCESSION   XM_032618647
VERSION     XM_032618647.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16797
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..16797
                     /gene="MAK16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 42 long SRA reads, 7
                     Proteins, and 54% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746879"
     CDS             95..991
                     /gene="MAK16"
                     /codon_start=1
                     /product="protein MAK16 homolog"
                     /protein_id="XP_032474538.1"
                     /db_xref="GeneID:116746879"
                     /translation="MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSC
                     PLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVRLHKNYEKALEQIDENLIYWP
                     RFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDN
                     AIEKELLERLKQDTYGDIYNFPIHAFDKALEQQEADSGSSDAEEKDDEEDKEDVGKRE
                     FVEDDEVDESDISDFEDMDKLDASSDEDEDDKSSSEEEEKAVDTKHKGKAPLKGPLRR
                     KKAYVEIEYELETKPEAKAKTT"
     misc_feature    95..676
                     /gene="MAK16"
                     /note="Protein MAK16 homolog; Provisional; Region:
                     PLN00040"
                     /db_xref="CDD:215038"
ORIGIN      
        1 taggcgagac tgggattccc ggaagtgatt ctccggaagc agtatggttg cttccctgcc
       61 ctggccaggc tcagcccgct gaaccgctga caagatgcag tcagatgatg ttatctggga
      121 tacactagga aacaagcaat tttgttcctt caaaataaga accaagactc agagtttttg
      181 cagaaatgaa tacagcctga ctggactgtg taatcggtcg tcctgtcccc tggcaaacag
      241 tcagtatgcc actatcaaag aagagaaagg acagtgctac ttgtatatga aggttataga
      301 acgagcagct ttccctaggc gtctctggga acgggtccgg cttcataaaa actatgagaa
      361 agcactggag caaatagatg aaaatctaat ttactggccc cgtttcattc gacacaaatg
      421 taagcagaga ttcaccaaga tcacccagta cctaattcga attagaaaac ttacactaaa
      481 gcggcagagg aaacttgttc ctttgagtaa gaaggtggaa cggagggaaa aaagaagaga
      541 ggaaaaggca ttaatagctg ctcagctgga caacgccatc gaaaaggaat tgctggagag
      601 actgaaacaa gatacgtatg gcgacatcta caacttcccc atccatgcct tcgacaaggc
      661 cctggaacag caggaggcag acagtggctc ttcagatgct gaggaaaaag atgatgaaga
      721 agataaagaa gatgtgggaa aaagagagtt tgtggaagat gatgaagttg atgagagtga
      781 cataagtgat tttgaggaca tggataaact ggatgccagc agtgatgaag atgaggatga
      841 taaatcctcc agtgaggaag aagaaaaggc cgttgacact aaacacaaag gcaaagcacc
      901 cttgaaagga cctttgagga ggaaaaaagc atatgtagag atagagtatg agctggagac
      961 aaagcccgag gccaaggcca aaaccacgtg atttcccttc agacgtttat aaacaggact
     1021 ggacattttg aacttcttcc ctttttttta atcttaaaca catacacact tctggatttt
     1081 gctctttatc ttgtttttaa cacaatattt gtgtttttaa tatttatgct acttctgtgg
     1141 ggcaaaaaat atgggaggga gtggagaaaa gcctaaattg tgaacagagt atttttatag
     1201 cattgttaca tgtgctggag taacagcttg agcccaagaa acgtaacaga tgagtttgtg
     1261 ggtgtaaata tttctaaatg ttaaatgcta cccacccgtt tccttggtat cctacccctg
     1321 cattcctccc cctcccccct ttatttagaa atgtccagac ttcaattttt tcatgtttct
     1381 tttccctact tctatgggag taaaaaggaa agaaggaaaa agaagatcta agttataatg
     1441 tttaatataa atataccttt ttcctgaaat gattccattt aaaacaattg gaaaagaaag
     1501 aaaatctttt cctcttcagg aaagtaatac aagtcttaag ttgcattgta gggagctcct
     1561 tcagaaacct gctgcactct tcggatatag ttccccacct tactgtcttc acagctttgg
     1621 ggaattttag ccaggagacc ctgaaacatc aaaccaaaca gcgtttgttt tttgtttgtt
     1681 tgtttgtttg atatgttttc cttttacctt ggtggttctt tcttggtacc atactcaaag
     1741 aaggaaggac ggatgacact agggcacagt tcacagaaca ggtgtaactt tagaaacaga
     1801 aatgtcctac tggagcacag agaagtagct tactaccagt cagggtgaat caagattaaa
     1861 tctagggctt gaaaagtgcc caagattaaa aagccaagac gaaataattt gaataaacca
     1921 tgctacccct aaatattttt aggatatgaa tttcttttca tgctgcctta taactttcaa
     1981 ttgatttcta aatggggtaa gaaatgagac agtaatttat aaattatgta tacgtggaca
     2041 cacagctatt gtatgctatg gctttgagaa gttaacttct gtggaatatg agaccaaagg
     2101 aagaattccc acgtggataa gtaagcatgt ggaaaacaca gttgcctctg aaaaactgga
     2161 aacatttctg gtaactgaat tgcttactct acctaaatta ttactccttg gtggtttata
     2221 gcccattatt tcaacctttt tttttttttt ttttcattca gaccactaga acagagctta
     2281 aatttctcga tcgtgatcct tttgcccatt ctctgtcctg gctccagaaa catccactga
     2341 tcctcttgcc ttttggtcta aacagttctg aatagcttta aaggaagaat aaggtattaa
     2401 tcaaactcca ttgaaggcta gaaggctcag aggtagagat tcgaaccccc cacgttcatt
     2461 tacagacttg gtcaggcact taaatgtaaa ttagaatcac aggaattacc tgaggatgaa
     2521 gaagcctatc agaaaccaag tcacagactg tcccttacct tcacctgtcc ttcagagcag
     2581 cggtccagga gaatcaggca gtcagtggcc tcttctaaca aggcactctt aacagattcg
     2641 ggtgtgaggc ttgaatccct tgctacatca catatcagtt tcaagagagc cttcagtaag
     2701 accacaagtc tacagggaac tctggaatca agaagaaaaa tgatgttcag actccgaatc
     2761 aggatattaa aactgaaaga gacttcaaag gccatctagt agaaaaccct catttcataa
     2821 atgaaggaac tgaagtcaaa atttaagacc acagagctgg aagcagaact cgagaccaga
     2881 ctccagattt ctgaacttta aggcccttgg ttttttctac agcatgctgc ccatacacac
     2941 tgacattctg gcctgcccag gaatacctag tttccctcca taagcatggt cctaccgtaa
     3001 gcaaacagcc cctcctgaaa agggagaact gggacctccc ttaccagggg cctatacttt
     3061 tgaccagaga acaggaaatg gtccacagtt ctttagcttt gatgcggtct taggcctgga
     3121 gattaaaaat acagtgaggg aaataagctt ggcttttgag acttacgtgt caatttgagt
     3181 tttctgtcac tatatttcta gatcctagat taccaccact taggcccagt ctatttactt
     3241 ctacttagtg tttctaaaag tttttatgat aatgattaca caaaattgta aatgcactta
     3301 atgccactga attgtacact ttaaaatggt aaattttatg tattttttaa ccacaataaa
     3361 aaaaaactaa aaagccttaa ggaagctgaa aaataattaa acttgtagtg tgaaaatata
     3421 aataaactat acttctgggc agaaatgtga ctgggagaag aaaagtttcc atccctcatc
     3481 ttgatctaaa aaacatgaag tgttttcctg taacttgtgt gctgctcagc cctccacctg
     3541 tcatcactca acacacaatt tgctgtttcc cactccccag gctccggccc ctccataatt
     3601 gacattcatt ttctgacctc tacgttcgct tgctgacctc ttctacttgg acagtattag
     3661 tctgattcaa ttgcattcat gcacctattc cagtcactaa aaatatctgt gtacttaata
     3721 ccaggttctg agtaagttct ggagttctca gtgtactcaa gtggtcagtc ttccatcctg
     3781 gagcttctag ttcagtagag gagaaagaca gtaagcaaat aaatgcaacc tcgttacaaa
     3841 tgtgactgtg gggtacatta tgaggagatg agagaatacg gctcagaaca gagacaccca
     3901 cgtattgctg aggcactgga ctctcgctga attaaacatt tcatgcaaga gagccttctg
     3961 cagacccaac atgtttgggt tccagcttgc tgttcgggac acctacctcg agccagagtt
     4021 ggaatgctaa gcaaatatat cccagatcag tattctgatt accacagatg ttcagtgatg
     4081 tgctatgagt gctccattct ctatcagatt taagaaacat tatggtgaac aaagttaagt
     4141 acgtctactg tagcactgct aaatggcctt taaaattcta atatgcatta taaatccaga
     4201 gaaatgtaca cctgaaggaa ctgactatat tatatcttca atgccacttt cacagttcaa
     4261 aatccaattg gtatggaaaa acaggaggta ttcaaatata tggcacgtcc ttaatacttt
     4321 gtactgaatg tacacctggg caagttctga agggagtatc ggctgagttt tgcccctctt
     4381 agcacacctg tctgctggct gtcatacctg ggccaagtat actgcatgag aagttttagg
     4441 gcttccaata tcttcaatct agcctcctcc tcgggtccat cataaacctc cagataacca
     4501 atgatgactc gatccagcct cttcaagtgc cggacagtta agatccccaa cctaaaaatg
     4561 acagagaaaa tgtgactcca aagagtgaag ttgaagttga gtatggccac gcccagctgc
     4621 cctgggactc acctcttcac gaaagccggt aggtttcttg cgtaagtcct gcgtaagaga
     4681 aggcggtgct caggctccat gtgcatcagg atcagctgca ggacctcgtc acagtgtgtg
     4741 gtgggtcggg ctgcatctcc cttccagtgc agggctttct ccaggatggg gaataaatcc
     4801 agcagacaca ggagcacagc ctaggaggaa gtaatagaaa ggaactgtag taaacgaatt
     4861 tgtattcaca acactcagat ttttctagca acttccacta atctaccatc cttggggtcc
     4921 atgtcataga attctagaac agtctagtaa taagtttaat gtatattact ttacattttc
     4981 aaactttttt tacattcttt tatctccatt ggagtgtctc aaggtaatac cctctcctca
     5041 ggatgattct ttgctaatct ataaaattgg aagaatagca gagctaagac tttaatccaa
     5101 aacttaggag tctaagtcta ctgtcagtaa attcctgagt ctaagtgata ttttacaagt
     5161 atttacaata aaaccactcc caaacagaat ctcagatgat cctatttgta tccactttga
     5221 cagccctatc tgaaatttca atgtctaggc actccctttt agctctcccg ggatctttgt
     5281 tttttctttt atgtcttttt tcctttttcc tttttttttt ttttttttcc ttaaatcacc
     5341 atctcaagag ccctaacacc tttctggctg ttagcacagc ctgggttctc aaaaccaaaa
     5401 atagtattta aaaaagaaag gggacagact gaggtgggag gagggagact aggcataaaa
     5461 taagaaacaa ggtaatttcg acctctgatt ttatataact tgtttcttct gtcttcagaa
     5521 tgttctctgc acacccccca tagttgaaac ttttttttaa acatctttac tgcagtataa
     5581 ttgctttata ttgttgtgtt agttgctgct gtataataaa gtgaatcagc tatatgtata
     5641 aatatatccc catatcccct cactcttgct tctccctccc atcctccgta tcccacccct
     5701 ctaggtggtc acaaagcacc gagctgatct ccctgtgcta tgcggctgct tcccactagc
     5761 tatctatttt acatttggtt gtgtatatgt gtccatgcca gtctctcact tcatcccagc
     5821 ttacccttcc ccctccctgt gtcctcaagt ccattctata catctgcgtc tttattgctg
     5881 tcctgccact aggttcttca gaaccttttt ttttttttta gattccatat atatgtgtta
     5941 gcatatggta tttgtttcac tctgtatgac ttacttcact ctgtatgaca gactctaggt
     6001 ccatccacct cactacaaaa aatgcaattt agtttctttt tatggctgag taatactcca
     6061 ttgtatatat gtgccacatc tcctttatcc attcatctgt tgatggacac ttaagttgct
     6121 tccatgtcct ggctattgta aatagagctg caatgaaatc gtggtacatg actctttttg
     6181 aattatggtt ttctcagggt atatgcccag tagtgggatt gctgggtcgt atggtagttc
     6241 tatttttagt tttttaagga gcgtccacac tgttctccat agtggctgta tcaatttaca
     6301 ttcccaccaa cagtgcaaga gggttccctt ttctccacat cctctccagc atttattgtt
     6361 tgtagatttt tttataatgg ccattctgac tggtgtgagg tgatacctca ttgtggtttt
     6421 gacttgcatt tctctaatga tgagtgatgt tgagtaccct ttcatgtgtt tgttggcaat
     6481 ctgtatatct tctttggaaa aatgtctatt taggtcttat gcccattttg gattgggttc
     6541 tttgttcttt gcatattgag ctgcatgagc tgcttgtata ttttggagtt taaccctttg
     6601 gtaaggatta aatccttttt cccagttgct tcatttgaaa atattttttc ccatcctgag
     6661 ggttgtcttt tcatcttctt tatggtttcc tttgctgtgc aaaagctttt aagtttcatt
     6721 aggtcccact tgtttttgtt tttatttcca tttcactagg gtcaaaaagg atcttgctgt
     6781 gatttatgtc atatagagtg ttctgcctat ggtttcctct aagagtttta gtgtctggcc
     6841 ttacctttag gtctttaatc cattttgagt ttatttttgt atatggtgtt tgggagtgtt
     6901 ctaatttcat tcttttacag tagctatcca gttttcccag caccacttat tgaagaggct
     6961 gtcttttctc cattgtatat tcttgcctcc tttatcaaac ataaggtgac catatgtgtg
     7021 tgggtttatc tctggtcttt ctatcctgtt ccattgatct atatttgttt ttgtgccagt
     7081 accatactgt cttgattact gtagctttgt agtatagttt gaagtcaggg agcttgattc
     7141 ctctagctct gtttttcttt ctcaagattg ctttggctat ccgggggctt ttgtgtttcc
     7201 ataaaaattg tgaaatcttt tgttctgtga aaaatgccat tggtagttta atagggattg
     7261 cattgaatct gtagattgct ttgggtagta tagtcgtttt cacaatgttg attgttccaa
     7321 ttcaagaaca tggtatatct ctccatctgt ttgtatcatc tttaatttct ttcatcagtg
     7381 tcttatagtt ttctgcatac aggtcttttg tctccttagg taggtttatt cctagatatt
     7441 ttattctttt tgttgcaatg gtaaatggga gtctttcttt aatttctctt tcaaattttt
     7501 catcattagt gtataggaat gcaagagatt tctgtgcatt gattttgtaa cctgctactt
     7561 taccacattc attattagct ctagtagttt tctggtagca tctttaggat cctctgtgta
     7621 tagtatcatg tcatctgcag tgacagtttt acttcttttt cgatttggat tccttctatt
     7681 tctttttctt ctctgattgc tgtggttaaa acttccaaaa ctatgttgaa taatagtggt
     7741 gtgagtggat aaccttgtct tgttcctgat cttagaggaa atggtttcag tttttcacca
     7801 ttgagaacga tgttggctgt gggtttgtca tatatggcct ttattatgtt gaggctagtt
     7861 cccttgacac ctactttctg gagggttatc ataaatggga gttgaatttt gtcaaaagtt
     7921 ttttctgcat ctattgagat gatatggttt ttctccttca atttgtcaat atggtttatc
     7981 acattgattg atttgcatgt attttagaat ccttgcattc ctgggataaa ccccacttga
     8041 tcatggtgta tgatcctttt tttaaaattt ttttaatgat ccttttaatg tgttgttgga
     8101 ttctgtttgc cattattttg ttgaggtttt ctgcatctat gttcatcagt gatattggcc
     8161 tgtaattttc tttttttgtg acatctttgt ctggttttgg tataaggatg atggtggcct
     8221 cgtagaatga gtttgggagt gttcctccct ctgctaaatt ttggaagagt ttgagaagga
     8281 taagtgttag ctcttctcta aatgtttgat agaattcgcc tgtgaagcca tctggtcctg
     8341 ggcttttgtt tgttggaaga tttttaatca cagtatcaat ttcagtgctt gtgattggtc
     8401 tgtttatatt ttctgtttct tcctggttca gtctcagaag gttgtgcttt tctaagaatt
     8461 tgtctatttc ttccaggttg tcattttatt ggcatacagt tgcttgtagt atatctcatg
     8521 atcctttgtg tttctgcagt gtcagttgtt acttctcatt tttcatttct aattctattg
     8581 atttgagtct tctccctttt tttcttgatg agtctggcta atggtttatc aattttgttt
     8641 atcttctcaa agaaccagct tttagtttta ttgatctttg ctattgtttc ctgcatttct
     8701 ttttcattta tttctgatct gatctttacg atttctttcc ttctactaac tttggggttt
     8761 tttttcttct tctttctcta actgctttag ctgtaaggtt aggttgtttg agatttttct
     8821 tgtttcttga ggtaggactg tattgctata aacttccctc ctcaaactgc ttttgctgca
     8881 ttccataggt tctgagtcat tgtgttttca ttgtcatttg tttctaggta ttttttggct
     8941 tcctctttga tttcttcagt aagctcttgg ttatttagta atgtattgtt tagtttccat
     9001 gtgtttgtat tttttataga tttttttcct gtaattgata tctagtctca tagcgttgtg
     9061 gtcggaaaag atacttgata cgatttcgat tttcttaaat ttaccgaggc ttgatttgtg
     9121 acccggaata tgatctatcg tggagaatgt tccatgagca cctgagaaga aaatttattc
     9181 tgttgttttt ggatggaatg tcctacaaat atcaattaaa tccatcttac ttaatgtatc
     9241 atttaaagct tgtgtttcct tatttatttt cactttggat gatctgtcca ctggtgaaag
     9301 tggggtgtta aaatccccta ctattattgt gttactgtcg atttcccctt ttatggctgt
     9361 tagcatttgc cttatgtatc gaggtgctcc tgtgttgggt gcataatact tacaattgtt
     9421 atatcttctt ctggggttga tcccttgatc attatgtagt gtccttcttt gtctcttgta
     9481 ataatcttta ttttaaagtc tattttgtct gatatgagaa ttgctactcc agctttcttt
     9541 tgatttccat ttgcatggaa tatctttttc catcccctca ctttcagtct gtatgtgtcc
     9601 ctaggtctga agtgggtctc ttgtagacag catatatgtg ggtcttattt ttgtatccat
     9661 ttagccagtc tatgtctttt ggttggagca tttaatccat atacatttaa ggtagttatc
     9721 aatatgtatg ttcctattac cattttctta attgttttgg gtttgttatt gtaggtcttt
     9781 tccttctctt gtgtttcctg cctaaagaag tttctttagc atttgttgta aagctggttt
     9841 ggtggtgctg aattctctta gcttttgctt gtctgtaaaa gttttaattt ctccatcaaa
     9901 tctgaatgag atccttgctg ggtagagtaa tcttggttgt aggtttttcc ctttcatcag
     9961 tttaaatatg tcctgccact tccttctggc ttgcagtttc tgctgaaaga tcagctgtta
    10021 accttatggg gattcacttt tatgttattt gttggttttc ccttgctgct tttaatattt
    10081 tttcttcgta tttaattttt gatagtttga ttaatatgtg tcttggcatg tttctccttg
    10141 ggtttatcct gtatgggact ctctgcaatt cctggacttg acagtcattt cctttccata
    10201 ttagggaagt tttcaactat aatctcttca aatattttct cggtcctttt tttttctctt
    10261 cttctaggac ccctataatt cgaacattgg tgcatttaat attgtcccag aggtctgtga
    10321 gactgtcctc aattcctttc attctgttat ctttattctg ctctgcggta attatttaca
    10381 ctattttatt ttccaggtca cttatccttt cttctgcctc agttattctg ctattgattc
    10441 cttctagaga attttttatt tcatttattg tgttgttcat ctctgtttgt tctttagttc
    10501 ttctaggtcc ttattaaatg tttcttgtat tttctccatt ctgtttccaa gattttggat
    10561 catctttact ctgaattctt ttcaggtaga ctgcctattt cctcttcatt tgtttggtct
    10621 ggtgggtttt taccttgctc catctgctgt gtatttctct gtcttctcat tttgcttaat
    10681 ttaccgtgtt tggggacccc ttttcgcagg ctgcagcttc atagttccca ttgttttttg
    10741 tgtctgcccc cagtggctaa ggttggttca gtgggttgtg taggctttct ggtggagggg
    10801 actggtgcct gtgttctggt ggatgaggct ggatcttgtc tttctggtgg acaggaccgc
    10861 atccagtggt gtgttttggg gtgtctgtga acttagtatg attttaggca gcctctctgc
    10921 taatgggtgc ggctgtgttc ctgtcttgct agttgtttgg catgggatgt ccagcactgt
    10981 agcttgctag ttgttgagtg gagcttggtc ttagcgttga gatggagatc tctgggagag
    11041 ccctccctga tttatattac atggggccag gaggtctctg gtggtccaat gtcctaaact
    11101 cggctctccc atctcagagg cacaggcctg atccccagcc agagcaccaa gaccctgtca
    11161 gccacatggc tcagaagaaa agggagaaaa aaataaagaa agaaggaaaa ataaaataaa
    11221 ataaaataat caaaattaaa aaaatttgta attgttaaaa ataaaaaaaa gaaagaagag
    11281 agcaaccaaa ccaaaaaaca aatccaccaa tgataacaag cattaaaaac tatacaaaag
    11341 ggcttccctg gtggcgcagt ggttgagagt ccgcctgcca atgtagggga cacgggttca
    11401 tgccccggtc tgggaagaac ccacatgcca cagagtggct gggcctgtga gtcatggcca
    11461 ctgagcctgc atgtccggag cctgtgctcc gcaacaggag aggccacaac agtgagaggc
    11521 ccgcatacca caaaaaaaaa aagaaaagaa aaaacagaca gacagaaccc taggataaat
    11581 agtaaaagca aagctataca gacaaaatca cacagagaag catatacatg cacagtcaca
    11641 aaaagagaaa aagacaaaaa gtatacatat atgtatatat taaaaaaaaa aaggaagaga
    11701 gtaaccaaat caataaacaa atctaccaac gataataaac tctaaatact aaactaagat
    11761 aaaaccagag acaaattaga tgcagaaagc aaaccccaag tctacagttg ctcccaaagt
    11821 ccaccacctc aattttggga tgatttgctg tctattcagg tattccacag atgcagggta
    11881 cttcgagttg actatggaga tttaatccac tactcctgag gctgctggga gagatttccc
    11941 tttctcttct ttgttcgcac agctcccggg gctcaggttt ggatttggcc ccgcctctgc
    12001 gtgtaggtca cctgttggca tctgttcttc gcccagacgg tacagggtta aaggaacagc
    12061 tgatctgggg gctctggctc actcaggcca gggggaggga ggggtacgga tgtggggcga
    12121 acctgcggca gcagaggcca gcatgacgtt gcaacagcct ggggcgcgct gtgtgttctc
    12181 ccaggaaggt tgtccccaga tcacgggacc ctggcagtgg ccggctgcac aagctcctgg
    12241 gaggggaggt gtggatagtg acctgtgctc gcacacaggc ttcttggtgg cggcagcagc
    12301 agccttagcg tctcatgccc gtctctgggg tccgcactga tagccgcggc tcgcgcccgt
    12361 ctctggagct cctttaagca gtgctcttaa tcccctctcc tcgcgcacca ggaaacaaag
    12421 agggaagaaa aagtctcttg cgtcttcggc aggtccagac ttttcgccgg actccctccc
    12481 ggccagccgt ggcgcactaa ccccctaaag gctgtgttca cgccgccaac cccagtcctc
    12541 tccctgcact ccaaccgaag cccaaggctc agctcccagc cctgccagcc ccagcgggtg
    12601 agcagacaag cctctcgggc tggtgagtgc tggtcggcac cgatcctctg tgcgggaatc
    12661 tctctgtttt gccctccgca cccctgttgc tgcactctcc tccatggctc tgaagcatcc
    12721 cccctccacc acccacagtc tccacccgca aaggggcttc ctactgtgtg gaaacctttc
    12781 ctccttcaca gctccctccc actggtgcag gtcccgtccc tattcttttg tctcttgttt
    12841 ttcttttttc ttttgcccta cccaggtaca tggggagttt cttgcctttg gggaggtctg
    12901 aggtcttctg ccagtgttca ataggtgttc tgtaggagtt gttccacatg tagatgtatt
    12961 tctgatgtat ctgtggggag gaaggtgatc tccacgtctt actcttccgc cagcttgaag
    13021 gtctcttcac agcagatgct gtgcaccgca gcctgcccag gaccctatcg tttacgtctg
    13081 tcctggtgtg attccaaaca ccacgattga aactcttatt catcctttat aagcaaatat
    13141 cacctcctta cccgatcctc ttaaaaccac cccaatacca ccaaacctca ttagctgcct
    13201 actgttcaac acccactgca ctttacagaa aacttttaat agatttatta ctctgtactg
    13261 tatttacata tacaatatat atatttgcat aaatgtctct ccaaaggatt tcttaaagtc
    13321 agaaaccctg tccgactcat tcattcttgg aacctacaat ggttactggc acacagtagg
    13381 tactcaatgt ctactggatg aaagaataaa tgacacaaaa aacccaacat acaaggagtt
    13441 cccagagtgt gtgttgatat aaaagcagcc cagaagtaaa gacacttaaa gtaataaaaa
    13501 tggaacattt ttgggagttc ccggtcagcc aagtggttag gactcggtgc ttccactgca
    13561 gggggcttgg gttcaatccc tggttgggga actaatatcc tgaaagctgt gtggccaaaa
    13621 agagaaaata aagaaaaagg aaagcaaaaa aagaacccat ctctcttttg ctcataaact
    13681 ggtgagacta aaaaaaaatt aaaaataaaa aatagaactt tttcagacat aaagctgccc
    13741 ccaagtgata tataattgac ccagatgaag ataaaacact ggcttttctg tggagactca
    13801 ggaatgtgga tgtctcttgg tattgcgaca ttttctagtc atttgctacc cccatatttt
    13861 caatttgtca gtggctctca gttatcatct ttaccttcct agaagagtaa aatgtgtacc
    13921 aagtattctt attcacatag tgccaccttc tactcaaatt tgagagctca gactcagagt
    13981 tatgaacaaa tcttaccatt acctgaatga ggtggtgctc ccgtgtgtac aggtggttga
    14041 aaagggcatg gtataggact tgggccctgt tgtactgcag caaatcagca gctggctgca
    14101 atcaaacaaa ttacccaatt aaaagcttcc caaggttggc aaaatgttga taatttttga
    14161 gattgaacat ggtacatggg attcattata ccactctctc tacttctgtg tatattttaa
    14221 aggctccata atacacagtt taaaaaaaaa aagcagtttc cttgagtaat agattgcaca
    14281 tttgggtata atccctttca gcttctgaat tttttgttcc ttgaaagtca gttgttaatg
    14341 actcaaagtc tggttcttca gtctgacgat ggtctacgtt tcttatatac atcacctata
    14401 agatacaacc tactaggttg gcagaggaaa atacagagag aaaaatataa attagtgaat
    14461 tgagagtcac atgacagcat taaaagaaag ccagttaata aaaggtataa acatgggtag
    14521 cagtagagca gtgatgtcat gaacgaggaa tggccatgat gactcagcct gcaccatcgg
    14581 tacagatgac agagaacgga ggccacttac cacatttagc acaatgtgat ggaggcagtg
    14641 gacacccagg attttgttct cggtttgata gtcatctgag atgagcaatg atgggggaag
    14701 taccctttcc agatgttggc tcagccaggg tcgagtgacc ttttgcagag tccatgagaa
    14761 aacatgtttg gtggctgggt tactcttcca ggagtcccta aatggaaatg tgaaaccaca
    14821 ttaagtgaca tggtgtccag ttcaagctaa ctatattttc ttatacttga aagaaaaata
    14881 catcccacat aagataactc aatgttaaca acatactttt ttaagattta gatcaaaata
    14941 acgtacagaa cttacactaa atacatttat cacccagggc tctgggtcta aagaatatcc
    15001 gatgaaaagc agccagttat aaccacagct atgtaaagaa tctgtggtga tggtggtggt
    15061 tacagtgaga aagtgttgag aagggagaga ggaggaaagg aaatgtcttc agtatcacta
    15121 ttattattat taccacatgg gagcaaatga atcaatattc aaacagcaat ttatagctta
    15181 taaagtgagt ttacacacat tactcaacca atcttcaaat acggtgtaac aggtaatgtt
    15241 atctttatat tgcaaataat gaaactggtc ctattcagaa gcaataaaaa gaagcaagag
    15301 acatcctcaa aactaagcct tttacctcca cattcctggt aaaaagacag ttatgtactc
    15361 acttttttct catcgctcca gggtcacaaa cacaaatgta caaagtagca agtggaaact
    15421 cacagaaaat actttagcta acagcaatct aaaggacttt cattttttca tcccaaacac
    15481 gcttccatat ctaataacta gcgatgagct tcacgatccc taagtttaaa ttcaaaccat
    15541 aagtttaaat cttctcgaag tttaaatctt ctccgaatcc ccaaccccac ctaactgaag
    15601 aaagttaagt ctaaataaat gggactgaac ttccaatttt agggcagttg tcaggactgg
    15661 aaaaagcact agaaaatcaa gtctgaagac ctgggttcta atgtcgaact tgccactacc
    15721 gagttaacgt catcacaatc acaactgttc tgggcttaca acacctttat gtcgctgatg
    15781 cagaaacaag actcctttga gctctaacct tctaaaacat tagtctgaag cttaagtcgg
    15841 tggcccttac ggcaggagta ctcacttatt caaatcgggt ttgagaagcc ccatgaccgc
    15901 agtaaatctc cctttctcat cttcattttc tccgttgagg aatccagcca cagaaccaca
    15961 ctcagtaacc tgaagcagta aggcgagcac ctgtccagcg acgccctgag attttgggct
    16021 ggtccatggt tgctccaagt tgtgtgtgat ggcaaaaata tagatgggtc ctgccaagtg
    16081 acggaggcct gccttccatg cagggcaaac caaggaattc ttagcggtct caactttcct
    16141 caacagctta aggaagagta acccaactgc tgccgctttc tcggccactt cggagtgacg
    16201 atcacctccc ccttccggcc cctcgggagg agctgcatac ttccccaggg cttttgccac
    16261 ctgccccagc atctcgggca ttccacggag cgaggtgtca ctccccgcaa ataactgatc
    16321 acattctttg gcatctagta cagcactgag gtcccgaaga gctgcatttc tggccttgcc
    16381 ccgtcgggat tcctgaccgg caaactggtg caagatctgg gagaaggcct gtccgagggc
    16441 ggaggaaggc cacggtccag gaaaggaaga gccctcccga ggtggggatt cccgagagcc
    16501 gtcaggctcc atgcctcaga ccgaggacga ggatggaggc gagcgggggt ccgctaaaga
    16561 gggaaggaaa gataactccg gggctgggat tctctcaaag aacagaacta aaatcaaata
    16621 aaacggtgag acgtcttgga ggaccgaggg agagtctagc ccgcagaaga gtaaaggtat
    16681 aaaggaaaag atgcgggaaa gggggttctc tgagagtaac agaagctcag attctcaaca
    16741 gtagaaggga gaaattactc ttgcctctct gaagactcaa aaaaaaaaaa aaaaaaa
//
LOCUS       XM_032618648            1898 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 122 (RNF122),
            transcript variant X1, mRNA.
ACCESSION   XM_032618648
VERSION     XM_032618648.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1898
                     /gene="RNF122"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746880"
     CDS             450..917
                     /gene="RNF122"
                     /codon_start=1
                     /product="RING finger protein 122 isoform X1"
                     /protein_id="XP_032474539.1"
                     /db_xref="GeneID:116746880"
                     /translation="MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGT
                     GIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKG
                     KDELGVLSCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPSEATQSIGILLDELV"
     misc_feature    720..860
                     /gene="RNF122"
                     /note="RING finger, H2 subclass, found in RING finger
                     protein 122 (RNF122) and similar proteins; Region:
                     RING-H2_RNF122; cd16676"
                     /db_xref="CDD:438338"
     misc_feature    order(726..728,735..737,780..782,786..788,795..797,
                     804..806,837..839,846..848)
                     /gene="RNF122"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:438338"
ORIGIN      
        1 ggggcagggg gctggggagt ataagggagg ggggcgtgcg cgcaccgtgt cagtttcgaa
       61 gtccctggct tctaccctct gcgcccaggc aactggatcg cgcctcgggc taaggctttt
      121 ccctcttctg tcgacccggc gcctccaccc ggccctgcgg cgccccgcag ctccccgccc
      181 cccaccagcc ccggggtcct tcctgctttt tctccgcggt gctttgatcc gggggccctt
      241 ctgtttgttt tctcttcttt cctctttgtt gctctaaaac ccacctcgcc gaagcccccc
      301 gctgcggagg gagttcgact tgcagaggaa ggcggctacc gcgcacctca tccgtccctc
      361 ctgcgacccc gccagccggc gcgcccaccc ccccgccaga cccgccgcct gcgttcgttc
      421 gcctgaggaa gccagccgag agttcattga tgcacccatt ccagtggtgt aacgggtgtt
      481 tctgcggcct gggactggtg agcaccaaca agtcctgctc gatgccaccc atcagtttcc
      541 aggaccttcc cctcaacatc tacatggtca tcttcggcac gggcatcttc gtcttcatgc
      601 tcagcctcat cttctgctgc tatttcatca gcaaactccg gaaccaggca cagagcgaac
      661 gatacggata taaagaggtg gtgcttaaag gtgatgccaa gaagttacag ttatatgggc
      721 agacctgtgc agtctgtctg gaagacttca aggggaagga tgagctgggt gtgctctcat
      781 gccaacacgc ctttcaccgc aagtgtctgg tgaagtggct ggaagtacgc tgtgtctgcc
      841 ccatgtgtaa caagcccatt gctggtccct cagaggccac ccagagcatc gggatcctat
      901 tggatgagct ggtgtgagtg ctgcctccat accaaggcct ggagaagacc tctagcctca
      961 cgggtgcctg gtccttccgc gaagccgcag tgaacaagac tgttgggtgg tgatgggcat
     1021 gctcacctgg aggggtgggg gtgccaggct ggtcttccag cctcagggtg agactagact
     1081 tgcccacctc tctgcttcct gaagcctgct tccctgctac tcagttctga tggtcttgcc
     1141 catcaggacc actgtatcct ggtactggac tatctgcccg ccttgtccct gctctgggaa
     1201 aagaaatcca ttcctatttg gccaagaact tagagcacac ccccttgagg gttccgctga
     1261 ggaggacaag ctgccctgac ctagaagaag gaatgagatg ggctctgccc cacctgtgac
     1321 ctccccgctc cttccagagg aaggttagaa gggaaggaag gaaagatgga ggaaccaagt
     1381 gcctccagtg gaagcgaggg aggctctgta ggaaatggga agagcaggga tgaacagaag
     1441 aaaagtcaat gtttacatgg gacctatgga aacaaaggct ggccggccgg cctgctgact
     1501 acagaggggt agagggcagc cccctgcccc tccgagatct gaggtgctat ccgttccctg
     1561 ttcctcggtt gatctcagag cttcctattc cgtgttgggg tttgagtatc cgccgccccg
     1621 gaggaagggc ttggtctaca cccaaaagga ttcccagggt ttttttctaa aggagcaaaa
     1681 agggggcctg gggatggggg tgtctggata ttaaggtcgc ggtggacacc ctcttcccct
     1741 ttgtaaatag tatttttata cttcatcctt accatctcag gctttataca tggaatcccc
     1801 caaatggaag gggtaggggt tttctgttcc tcccccaagt gggtgagggt gggaaaaagg
     1861 tatgtattta aagcaaatta aatttaataa caagtttc
//
LOCUS       XM_032618649            1871 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ring finger protein 122 (RNF122),
            transcript variant X2, mRNA.
ACCESSION   XM_032618649
VERSION     XM_032618649.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1871
                     /gene="RNF122"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746880"
     CDS             426..890
                     /gene="RNF122"
                     /codon_start=1
                     /product="RING finger protein 122 isoform X2"
                     /protein_id="XP_032474540.1"
                     /db_xref="GeneID:116746880"
                     /translation="MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGT
                     GIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGTCAVCLEDFKGK
                     DELGVLSCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPSEATQSIGILLDELV"
     misc_feature    696..833
                     /gene="RNF122"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(699..701,708..710,753..755,759..761,768..770,
                     777..779,810..812,819..821)
                     /gene="RNF122"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438338"
ORIGIN      
        1 gggagggggg cgtgcgcgca ccgtgtcagt ttcgaagtcc ctggcttcta ccctctgcgc
       61 ccaggcaact ggatcgcgcc tcgggctaag gcttttccct cttctgtcga cccggcgcct
      121 ccacccggcc ctgcggcgcc ccgcagctcc ccgcccccca ccagccccgg ggtccttcct
      181 gctttttctc cgcggtgctt tgatccgggg gcccttctgt ttgttttctc ttctttcctc
      241 tttgttgctc taaaacccac ctcgccgaag ccccccgctg cggagggagt tcgacttgca
      301 gaggaaggcg gctaccgcgc acctcatccg tccctcctgc gaccccgcca gccggcgcgc
      361 ccaccccccc gccagacccg ccgcctgcgt tcgttcgcct gaggaagcca gccgagagtt
      421 cattgatgca cccattccag tggtgtaacg ggtgtttctg cggcctggga ctggtgagca
      481 ccaacaagtc ctgctcgatg ccacccatca gtttccagga ccttcccctc aacatctaca
      541 tggtcatctt cggcacgggc atcttcgtct tcatgctcag cctcatcttc tgctgctatt
      601 tcatcagcaa actccggaac caggcacaga gcgaacgata cggatataaa gaggtggtgc
      661 ttaaaggtga tgccaagaag ttacagttat atgggacctg tgcagtctgt ctggaagact
      721 tcaaggggaa ggatgagctg ggtgtgctct catgccaaca cgcctttcac cgcaagtgtc
      781 tggtgaagtg gctggaagta cgctgtgtct gccccatgtg taacaagccc attgctggtc
      841 cctcagaggc cacccagagc atcgggatcc tattggatga gctggtgtga gtgctgcctc
      901 cataccaagg cctggagaag acctctagcc tcacgggtgc ctggtccttc cgcgaagccg
      961 cagtgaacaa gactgttggg tggtgatggg catgctcacc tggaggggtg ggggtgccag
     1021 gctggtcttc cagcctcagg gtgagactag acttgcccac ctctctgctt cctgaagcct
     1081 gcttccctgc tactcagttc tgatggtctt gcccatcagg accactgtat cctggtactg
     1141 gactatctgc ccgccttgtc cctgctctgg gaaaagaaat ccattcctat ttggccaaga
     1201 acttagagca cacccccttg agggttccgc tgaggaggac aagctgccct gacctagaag
     1261 aaggaatgag atgggctctg ccccacctgt gacctccccg ctccttccag aggaaggtta
     1321 gaagggaagg aaggaaagat ggaggaacca agtgcctcca gtggaagcga gggaggctct
     1381 gtaggaaatg ggaagagcag ggatgaacag aagaaaagtc aatgtttaca tgggacctat
     1441 ggaaacaaag gctggccggc cggcctgctg actacagagg ggtagagggc agccccctgc
     1501 ccctccgaga tctgaggtgc tatccgttcc ctgttcctcg gttgatctca gagcttccta
     1561 ttccgtgttg gggtttgagt atccgccgcc ccggaggaag ggcttggtct acacccaaaa
     1621 ggattcccag ggtttttttc taaaggagca aaaagggggc ctggggatgg gggtgtctgg
     1681 atattaaggt cgcggtggac accctcttcc cctttgtaaa tagtattttt atacttcatc
     1741 cttaccatct caggctttat acatggaatc ccccaaatgg aaggggtagg ggttttctgt
     1801 tcctccccca agtgggtgag ggtgggaaaa aggtatgtat ttaaagcaaa ttaaatttaa
     1861 taacaagttt c
//
LOCUS       XM_032618650            1407 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tripartite motif family like 1 (TRIML1),
            mRNA.
ACCESSION   XM_032618650
VERSION     XM_032618650.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-408               VOSU01000013.1     15777719-15778126
            409-504             VOSU01000013.1     15778367-15778462
            505-711             VOSU01000013.1     15779994-15780200
            712-735             VOSU01000013.1     15780202-15780225
            736-758             VOSU01000013.1     15781255-15781277
            759-856             VOSU01000013.1     15781449-15781546
            857-1407            VOSU01000013.1     15782875-15783425
FEATURES             Location/Qualifiers
     source          1..1407
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1407
                     /gene="TRIML1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins"
                     /db_xref="GeneID:116746882"
     CDS             1..1407
                     /gene="TRIML1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: probable E3
                     ubiquitin-protein ligase TRIML1"
                     /protein_id="XP_032474541.1"
                     /db_xref="GeneID:116746882"
                     /translation="MSTADLMENLREELTCFICMDYFTGPVTTEYWHSFCLVCLLRSW
                     EEHNTPLSCPECWRTLEIPHFQPSEHLGKLVGISKQLRSRVLQSEGNQGSYERMLAAA
                     KVLSDDEQGVKDSSTQGHGINRMNLSNEAEEHHKEKLQEILNILRKKKNETQVILTHE
                     KERVILCKEETKTCKQVVVSEYAKMHQFLKEEEQLQLQLLETEERENLRRLRDHEIKL
                     TQRIQSLSKTIGQIESMCQNSIIESFEDVRGILERSEPLLLQCPEAITTELTLCHITG
                     MREMLRKFSMDITLDPATANAILVLSEDLKSVKHGGTRQQLPDNPERFDQSATVLGAQ
                     IFTCGRHYWEVEVGNKTEWEVGTCKDSVSRKGNLPKPPGDLFSLTGLKIGDDYSLWVS
                     SPLKGQHVREPVHKVGVFLDYESRHIAFYNVTDESLIYSFPPASFQEALRPIISPCFP
                     NEGANTGPLTICSLNNHV"
     misc_feature    25..204
                     /gene="TRIML1"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(46..48,55..57,91..93,97..99,106..108,115..117,
                     157..159,166..168)
                     /gene="TRIML1"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
     misc_feature    859..1386
                     /gene="TRIML1"
                     /note="PRY/SPRY domain in tripartite motif-containing
                     (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10,
                     TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38,
                     TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72,
                     NF7 and bloodthirsty; Region: SPRY_PRY_C-I_1; cd13733"
                     /db_xref="CDD:293968"
ORIGIN      
        1 atgtctacag cagatttgat ggagaatctc agggaggaac tgacctgttt catctgcatg
       61 gactatttca ccggcccagt gaccaccgag tattggcaca gcttttgtct ggtgtgtctc
      121 ctgagaagct gggaggaaca taacactcct ttatcttgtc ctgagtgctg gaggaccttg
      181 gagatcccac atttccagcc cagtgagcat ctggggaagc tggttggcat cagcaagcag
      241 ctcagatccc gggtgctgca gagtgagggc aaccaaggca gctatgagag aatgctagct
      301 gccgctaagg tgttgtctga tgatgagcag ggtgtaaagg attcctcaac ccaaggtcat
      361 ggaataaaca gaatgaatct ctcgaatgag gctgaggagc atcataaaga gaaactccag
      421 gaaatcctaa atattttgcg taaaaagaaa aatgaaactc aggttatatt aacccatgag
      481 aaggagagag tgatactgtg taaggaagag acaaagacct gtaaacaggt tgttgtgtca
      541 gaatatgcaa aaatgcacca gttcctgaag gaggaggagc agctgcagct ccagctactg
      601 gaaacggagg aaagagagaa cctgaggaga ctgagggacc atgagatcaa gctgacccag
      661 cgaattcaaa gcctgagcaa aacaattgga cagatagagt ccatgtgtca gaactcgatc
      721 atagagtcat ttgaggatgt aagaggaata ctggaaagga gtgagccact cttgcttcag
      781 tgtccagagg ccatcaccac ggaactgact ctgtgccaca tcactgggat gagagagatg
      841 ctaagaaaat ttagcatgga tataactcta gatccagcca cggccaacgc cattcttgtc
      901 ttgtctgagg atctgaaaag tgtgaaacat ggaggaaccc gacagcagtt gcctgacaac
      961 cccgaaagat ttgaccaatc tgcaacggtg ctgggcgctc agatcttcac ctgcgggaga
     1021 cactactggg aggtggaagt gggcaacaag actgagtggg aggtgggcac ctgcaaggac
     1081 tcagtgagca gaaaggggaa tctccccaag cctccagggg acctcttctc acttacaggc
     1141 ttaaaaattg gagatgatta tagtctttgg gtctcatcac ctttgaaagg ccaacatgtt
     1201 agagagccag tgcataaggt tggtgttttc ttagactatg agtccagaca catagcattc
     1261 tacaatgtga cagacgagtc ccttatctac agtttccctc cagcctcttt ccaagaggct
     1321 ctcaggccca tcatctcccc ttgtttccca aatgaagggg caaacacagg ccctcttacc
     1381 atctgctcac tgaataacca tgtctga
//
LOCUS       XM_032618651            2617 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ADAM metallopeptidase domain 2 (ADAM2),
            mRNA.
ACCESSION   XM_032618651
VERSION     XM_032618651.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2617
                     /gene="ADAM2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 Proteins"
                     /db_xref="GeneID:116746883"
     CDS             88..2286
                     /gene="ADAM2"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 2"
                     /protein_id="XP_032474542.1"
                     /db_xref="GeneID:116746883"
                     /translation="MWCLLFLLLGLIGLQTDDNSERLRVQITVPEKIRSTSSGGVETY
                     VSYNIVIDGKTYTVNLMQKVFLPHNFRVYGYNGTGSMKPLEQQFQNLCYYQGYIEGYP
                     NSMVIVSTCTGLRGLLQFENVSYGIEPLEPSVGFEHVIYQVKHRNTGASLYAEKDIES
                     REKPYKIQSVEPPADFSQYIEMHVVVEKNLYNHMGSDTTVVTQKIFQLIGLTNAIFDS
                     FNITIILSSLELWIDENKIQVTGDASELLRRFFKWKQSYLVLRPHDVAFLLVYREKPN
                     YVGATFQGRLCDKYYGGGVALHPRTISLESLAVIIAQLLSLSMGITYDDINKCHCPGA
                     VCVMNPEAIHSSGVKTFSNCSMEDFAHFISKSKSQCLQNQPRLGSTYKVAVCGNGKVE
                     EGEQCDCGDQEDCAALPDSCCNQATCRLNVGSACATGPCCDACAFIEKGQVCRASTDE
                     CDVSEYCNGTSAACQEDLYVQDGHPCAENQWICVNGKCMNGIKQCSEIFGEGSGFGTQ
                     ECFDQLNSKTDPSGNCGSNASGYTQCNPKDVRCGKLLCTYDKGIIINIPNATVLYSNI
                     DGHICVGVEYACDDKDSGNMWVKDGTVCGLNKVCKNKKCVDSSFLNYDCTPEKCHNQG
                     LCNNKRHCHCNPTYLPPNCQASLESWEGGSIDSGNFPPSVPGLPDRRYIENVYYSTPT
                     RWPFFLLIPFFIILCVLIATLVKVYFQKKNWRTEDYTSDGQVESESETKD"
     misc_feature    163..510
                     /gene="ADAM2"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    619..1212
                     /gene="ADAM2"
                     /note="Reprolysin (M12B) family zinc metalloprotease;
                     Region: Reprolysin; pfam01421"
                     /db_xref="CDD:426256"
     misc_feature    1261..1488
                     /gene="ADAM2"
                     /note="Region: Disintegrin; pfam00200"
                     /db_xref="CDD:459709"
     misc_feature    1498..1911
                     /gene="ADAM2"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 gtgaaggtgt gggtctcctc gcgcccccaa ctgccctgta gtcaagcgta cggccgttat
       61 tcaggctgcc atccaggacg tccagccatg tggtgccttc tgtttctgct tctggggctc
      121 atcgggcttc agacagacga taattcagaa agactacgtg tgcaaattac agttccagag
      181 aaaatacggt caacgtcaag tggaggagtt gaaacatacg tgtcctacaa cattgtaatt
      241 gatgggaaaa cgtacactgt gaacctaatg caaaaagttt tcttacctca taattttagg
      301 gtttatggtt ataatggcac aggaagtatg aaacctcttg aacaacagtt tcagaactta
      361 tgctactacc aagggtatat tgaaggttat ccaaattcta tggtgatcgt tagcacatgt
      421 actggactca ggggcttact acaatttgaa aatgtaagtt atggaattga gcccttggag
      481 ccttcagttg gttttgaaca tgtgatttat caagtaaaac ataggaatac aggtgcttct
      541 ttatatgctg agaaggatat tgagtcaaga gaaaagccct ataaaataca aagtgtagag
      601 ccacctgcag acttctctca gtatatagaa atgcatgttg tagttgaaaa aaatttatat
      661 aatcatatgg gttctgatac aactgttgtc actcaaaaaa ttttccagtt gattggattg
      721 accaatgcta tttttgattc atttaatatt acaataattc tatcttcatt agagctttgg
      781 atagatgaaa ataaaattca ggtaactgga gatgccagtg aattattacg cagatttttt
      841 aaatggaaac aatcttatct tgttttgcgt ccacatgatg tggcattttt acttgtttac
      901 agagaaaaac caaattatgt tggtgcaacc tttcaaggga ggctgtgtga taaatactat
      961 ggaggaggtg ttgctctgca ccccagaacc ataagtctgg aatcacttgc agttattata
     1021 gctcaattac tgagccttag tatgggaata acttatgatg acatcaacaa atgccattgc
     1081 ccaggagctg tctgtgtaat gaacccagaa gcaattcatt ccagtggtgt gaagaccttt
     1141 agtaactgca gtatggaaga ttttgcgcat tttatttcaa agtcaaagtc ccagtgtctt
     1201 caaaaccagc cacgtttagg ttcaacatac aaagtggcag tttgcggtaa cggaaaagtc
     1261 gaagaaggag aacaatgtga ctgtggggat caggaggatt gtgcagctct gccagactca
     1321 tgctgtaacc aagccacatg tagactcaat gttgggtcag cttgtgctac tggaccgtgc
     1381 tgtgatgctt gtgctttcat agaaaaagga caagtgtgca gggcttccac tgatgaatgt
     1441 gatgtctctg aatactgcaa tggtacatct gcagcatgtc aagaagacct ttatgttcag
     1501 gatgggcatc catgtgcaga gaatcaatgg atctgtgtga acggaaaatg tatgaatggg
     1561 ataaaacaat gttcggaaat atttggtgaa ggttcaggtt ttggtactca agagtgtttt
     1621 gatcaactta attctaagac tgatccatct gggaactgtg gctcaaatgc ttcagggtac
     1681 acacagtgta atcctaagga tgtgcgatgt ggaaaattac tgtgtacata tgacaaagga
     1741 attataatta atattccaaa tgccactgtt ttgtatagta acatagatgg acacatctgc
     1801 gttggagtgg aatatgcatg tgatgataaa gacagcggaa acatgtgggt aaaagatgga
     1861 actgtttgtg gtctaaataa ggtttgcaag aataagaaat gtgtagattc ttcattcttg
     1921 aattacgact gtactccaga aaaatgccac aatcaaggtc tatgtaataa taaaaggcac
     1981 tgtcactgta accctacgta tttacctcca aattgccaag cttcactaga gtcatgggaa
     2041 ggtgggagta ttgatagtgg caactttcca ccctcagtac caggcctacc tgacaggcgc
     2101 tatattgaga atgtttacta ttccacacct acgagatggc catttttctt actcattcct
     2161 tttttcatta ttctctgtgt actgattgct acactggtaa aagtttattt ccaaaagaaa
     2221 aattggagaa ctgaggacta tacaagcgat gggcaagtgg aaagtgagag tgagaccaaa
     2281 gactagcctg gaaaacaaag aatccatggt atcacaagta attatctttg atggacagga
     2341 aaaatggaaa agaaaacgta catgccttgc ctaattacct gggattcaaa acctgtgcat
     2401 tatgtctttc atctgtcaag aaaagataaa agttttcata gataacataa taccacaagt
     2461 aacttatttg caaggaatgc atgtttatga gtttttatat tacatatttc ttatttttaa
     2521 agttacctca tattaattct gttagtaagc attaactctg ttaatgagta ggcatgaggt
     2581 aaggaaagtg tataatacat gcaataccat gattaaa
//
LOCUS       XM_032618653            1935 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus A disintegrin and metallopeptidase domain
            3-like (LOC116746884), mRNA.
ACCESSION   XM_032618653
VERSION     XM_032618653.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1935
                     /gene="LOC116746884"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 59% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746884"
     CDS             1..1653
                     /gene="LOC116746884"
                     /codon_start=1
                     /product="A disintegrin and metallopeptidase domain
                     3-like"
                     /protein_id="XP_032474544.1"
                     /db_xref="GeneID:116746884"
                     /translation="MLFLLLLLSGLGRLTSAGHHTETSLIQITVPQKTGTNTNDGGVS
                     ETHVTYAIKIDRKTYTLHLEKQSFLDSHFLVYSYNKSGILYPDSSFVKGHCFYQGYAT
                     EIANSVVTLSTCSGLRGLLQLENVSYGIQPLESSATYEHMLYQIKDNEIDFPPIAENN
                     STTQLADQSYKIFVKSEKNSGVLLKRVLKIQVIMDKALYDYMGSEVALASKKVVHIFS
                     LINTMYSQLKVLVTLTSLELWSDQNKISTNGDANEVLQRFVSWREKFLFQRSHDMAHL
                     LIYRDHPNYVGATYHGMACHPKFAAGIALYPKMITLEAFSVVLAQLLGINLGLTYNND
                     IYSCYCPGTTCIMNPEAIRSRGVKFFSSCSMDEFKHTASQPEFECLQNRTVSKVVPQG
                     RVSVCGNGVLEPPEQCDCGGPEQCSHKKCCDAVTCFLIGDADCGTGPCCDRKTCLIAE
                     RGHVCRKSTDMCDFPEFCNGIAEFCVPDMKSADLELCNNKTAFCYHGVCQDTDKQCAE
                     LFGKFSKGASALCSQEVNMHTDDFGDCYGRFCNYRFVTEDLA"
     misc_feature    79..432
                     /gene="LOC116746884"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    562..1146
                     /gene="LOC116746884"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(961..966,973..975,991..993)
                     /gene="LOC116746884"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1207..1434
                     /gene="LOC116746884"
                     /note="Region: Disintegrin; pfam00200"
                     /db_xref="CDD:459709"
     misc_feature    1447..>1605
                     /gene="LOC116746884"
                     /note="ADAM cysteine-rich; Region: ADAM_CR; pfam08516"
                     /db_xref="CDD:462504"
ORIGIN      
        1 atgctgtttc tcttgctgct cctctcaggg ctgggtcggc tgacctccgc gggccatcac
       61 actgaaacat cacttataca aattacagtg ccacagaaga ctgggacaaa caccaatgac
      121 ggcggtgttt cagaaacgca tgtcacctat gccatcaaaa ttgacaggaa aacatacact
      181 ctccaccttg aaaaacagtc atttttagac tctcatttcc tggtgtattc atacaacaag
      241 tcagggatat tgtatccaga ttcttcattt gtaaagggcc attgctttta tcaaggatat
      301 gccacagaga ttgcaaattc ggttgtgaca cttagcacct gctctggact caggggatta
      361 ctgcagttgg agaatgtcag ttatggaatt cagccgttgg aatcttcagc tacatatgag
      421 catatgcttt atcagataaa ggataatgaa attgatttcc cccccatagc agaaaataat
      481 tctacaaccc aattggcaga tcagtcctac aaaatttttg tgaaatcaga aaaaaattct
      541 ggtgtgctgt tgaaaagagt tctgaaaata caagtcatta tggataaagc cttgtatgat
      601 tatatgggct ctgaagtggc acttgcatct aagaaagttg tccatatctt tagtctcatc
      661 aacactatgt attctcagct taaagtgttg gttacattaa cttctctgga gctctggtca
      721 gatcaaaata agatttcaac taatggggat gctaatgaag ttctacaaag atttgtgtca
      781 tggagagaaa aatttttatt tcaaaggtcc catgatatgg cacacttatt aatttatagg
      841 gaccatccta attatgtagg agcaacatat catggaatgg catgccatcc aaagtttgct
      901 gcaggaattg ctctgtatcc aaagatgata accttagagg cattttcagt tgttttggca
      961 cagttgcttg gaattaacct gggattaaca tataataatg acatctacag ttgttactgt
     1021 ccaggaacta catgcataat gaatcctgaa gcaatacgtt cccgtggtgt aaagtttttt
     1081 agcagttgca gcatggatga attcaaacat acagcttcac agcctgaatt tgaatgtctt
     1141 cagaatcgaa cagtttcaaa agtggttcca caaggaagag tttcagtttg tggcaatgga
     1201 gttctggaac cgccagagca atgtgattgt ggtgggccag agcaatgctc tcataaaaaa
     1261 tgctgtgatg ctgtaacatg ttttctgatt ggagatgcag actgtggtac aggaccatgc
     1321 tgtgacagaa aaacttgtct gatagctgaa agaggacatg tatgtaggaa aagcacggat
     1381 atgtgtgatt ttccagaatt ttgcaatggg atagctgagt tttgtgtacc tgatatgaaa
     1441 tctgctgatt tagaactgtg caataataag actgcctttt gctatcacgg agtatgccaa
     1501 gatacagata aacagtgtgc ggagttgttt ggaaaatttt cgaagggggc ttctgctcta
     1561 tgttcacaag aagtgaatat gcatacagat gactttggag actgttatgg tcgtttttgt
     1621 aattatcgtt ttgtaacaga ggatcttgca tagacgtcaa cgtcagcaca gacgcaactt
     1681 gtatctccaa aataaagtgc aatggacatg gggtttgcaa tactctccat aactgtcact
     1741 gtgatgctgg atatgcccct ccacaatgtg aaccaatgcc ttcatcacca ggaggaaata
     1801 tcaatgacgg gttttggctt acatcaggtt agtatccaga tcacggtact ccaacagagc
     1861 cgtctgcact tagaggaata gtatacacct ccacggtctg tgtggctgtt gagcacctag
     1921 catgtgggta gtgca
//
LOCUS       XM_032618654             933 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 596-like
            (LOC116746885), mRNA.
ACCESSION   XM_032618654
VERSION     XM_032618654.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 6% of CDS bases
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..933
                     /gene="LOC116746885"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins"
                     /db_xref="GeneID:116746885"
     CDS             1..933
                     /gene="LOC116746885"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:406..408,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: zinc finger protein
                     596-like"
                     /protein_id="XP_032474545.1"
                     /db_xref="GeneID:116746885"
                     /translation="MEPLESVTLEDVAINFTQEEWALLDTSQKTLFRNVMLENITHLV
                     SVGYQISKSDVISQLEQGKELWSEATGCLQGQSPAKSFECPFCGKALSNSSSLRRHKM
                     IHTGEKPYKCHLCGSGFFQSSNLRNHKRIHTGEXPYKCHVCGKVFSQSSYLKEHEKIH
                     TGEKPYKCHLCEKSFNQISYLRKHKKIHSIEKHYECHQCGKAFSQSSGLSQHKRIHTG
                     EKPHICLLCGKAFSHSSELTRHKRTHTGEKPYKCQQCGNAFSQHANLRRHERTHTGEQ
                     PYECQWCGKCFSHESSLRRHEGSQHWRESQEGPQ"
     misc_feature    19..201
                     /gene="LOC116746885"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    250..312
                     /gene="LOC116746885"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(250..252,259..261,298..300,310..312)
                     /gene="LOC116746885"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(265..267,271..273,277..279,283..288,295..300,
                     307..309,349..351,355..357,367..372,379..384,391..393,
                     433..435,439..441,445..447,451..456,463..468,475..477)
                     /gene="LOC116746885"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <322..783
                     /gene="LOC116746885"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    334..396
                     /gene="LOC116746885"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    418..480
                     /gene="LOC116746885"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    502..564
                     /gene="LOC116746885"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    586..648
                     /gene="LOC116746885"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(586..588,595..597,634..636,646..648)
                     /gene="LOC116746885"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(601..603,607..609,613..615,619..624,631..636,
                     643..645,685..687,691..693,703..708,715..720,727..729,
                     769..771,775..777,781..783,787..792,799..804,811..813)
                     /gene="LOC116746885"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    670..732
                     /gene="LOC116746885"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    754..816
                     /gene="LOC116746885"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    790..867
                     /gene="LOC116746885"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    838..888
                     /gene="LOC116746885"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 atggagcctc tggaatcagt gacgttggaa gatgtagcga tcaacttcac ccaggaagag
       61 tgggccctgc tggacacatc ccagaaaacc ctgttcagaa acgtgatgct ggaaaatatc
      121 acccacctgg tctccgtagg gtatcagatc agcaaatcag atgtgatttc ccagctcgaa
      181 caaggaaaag agctgtggag tgaagcaaca ggatgcctcc aaggccagag tccagctaaa
      241 tcgtttgaat gtcctttctg tgggaaagcc ttgagtaatt cctctagcct cagacgacac
      301 aagatgattc atactggaga gaaaccatat aaatgtcatc tctgtggaag tggctttttt
      361 caaagttcta accttagaaa tcacaagcgg atccacactg gagagtaacc atataaatgt
      421 catgtgtgtg ggaaagtctt cagtcaaagt tcctacctga aagaacatga gaaaattcac
      481 acaggagaga agccatataa atgccatcta tgtgagaaaa gttttaatca aatctcttac
      541 cttagaaaac ataagaaaat ccattccata gagaagcact atgaatgtca tcagtgtggg
      601 aaagccttta gtcagagctc tggacttagt cagcacaaga gaatccacac cggagagaaa
      661 ccacacatat gtcttctgtg tgggaaggcc ttcagtcaca gttctgaatt gactcggcac
      721 aaaaggaccc acacagggga gaaaccctat aaatgtcagc agtgtgggaa tgctttcagt
      781 cagcatgcaa acctgagaag acatgagaga acccacactg gagagcagcc ctatgaatgt
      841 cagtggtgtg ggaaatgctt cagtcacgaa tcttccctta gacgacatga gggaagccag
      901 cactggagag aaagtcagga gggccctcag tag
//
LOCUS       XM_032618655            2365 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus disintegrin and metalloproteinase
            domain-containing protein 5-like (LOC116746886), mRNA.
ACCESSION   XM_032618655
VERSION     XM_032618655.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2365
                     /gene="LOC116746886"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 94% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746886"
     CDS             71..2284
                     /gene="LOC116746886"
                     /codon_start=1
                     /product="disintegrin and metalloproteinase
                     domain-containing protein 5-like"
                     /protein_id="XP_032474546.1"
                     /db_xref="GeneID:116746886"
                     /translation="MHGGHNPHKSFLQTTVPEKISTSEAIEHPETNVAYIITIEGKPY
                     FIHLKKQSFLSSASVVYSYDKDDTQHSQPLLAQMDCNYHGYVAGFPNSLVSLNICSGL
                     RGILQFKNISYGIEPMEAVSGFMHMIHEEKNDITNIPLLWENDTYIYDSSQYQVRKSS
                     ERPGYFKLFPRYLDMYIIVDKNLFDYMGSDVKVVTQKVIQIIGFVNTMLTQLKLTVKI
                     SSIEIWSNKNKISTTSHPNHILYRLLEWKYEFLSRPHHTVYLFAFQKSPTFIGATHPA
                     KICDKNFAGGVALYSEGLSLESYALSIVQLLGLNMGMSYDNTEICHCSGDVCTMSPKA
                     VLSGGIKDFSTCSLDDFKYFAAHSGLECLRKILPVGPVYKQWKVCGNGKLESGEECDC
                     GTLQNCTHPNCCDPRTCTKKKNKICGSGECCTRDCKIKPVNTPCRKIVDECDFLEFCD
                     GKNAHCVPDTYARDGQSCDSGDSFCYKGRCRSFTRQCRKLIGGASRGAPFACFDEINS
                     RGDKFGNCGRKYCNYPNMLCGKLVCTWPHKALVRRRNLSVIYTHVRDDVCTSTFLHTE
                     RTPRKTVTTVEKPEDRDQTFVEDGTVCGPEMYCLRFNCVELKYHVNFQSCNSARDCNS
                     NGVCNNFNNCHCKMGFAPPRCKPMAGDFGSIDDGHRGKVGKKFLLERSLSHPKHRFQL
                     IFYISLPVFIIIIAVIISQSKIRELCYRGEPESERSVSEESSSNSKLSLSVSNSL"
     misc_feature    131..454
                     /gene="LOC116746886"
                     /note="Reprolysin family propeptide; Region:
                     Pep_M12B_propep; pfam01562"
                     /db_xref="CDD:460254"
     misc_feature    581..1159
                     /gene="LOC116746886"
                     /note="Zinc-dependent metalloprotease; adamalysin_II_like
                     subfamily. Adamalysin II is a snake venom zinc
                     endopeptidase. This subfamily contains other snake venom
                     metalloproteinases, as well as membrane-anchored
                     metalloproteases belonging to the ADAM family; Region:
                     ZnMc_adamalysin_II_like; cd04269"
                     /db_xref="CDD:239797"
     misc_feature    order(983..988,995..997,1013..1015)
                     /gene="LOC116746886"
                     /note="active site"
                     /db_xref="CDD:239797"
     misc_feature    1223..1453
                     /gene="LOC116746886"
                     /note="Homologues of snake disintegrins; Region: DISIN;
                     smart00050"
                     /db_xref="CDD:214490"
     misc_feature    1457..1891
                     /gene="LOC116746886"
                     /note="ADAM Cysteine-Rich Domain; Region: ACR; smart00608"
                     /db_xref="CDD:214743"
ORIGIN      
        1 ttgggccagc gcggctccag taagcggagc catgttcctc ttgctggttt gctcaccggc
       61 ctaggcgggc atgcacgggg gccacaatcc tcataaaagc tttctgcaga ccacagttcc
      121 tgaaaagatt tcaacatccg aggcaataga acatccagaa actaatgttg cttacatcat
      181 tacaatagaa ggaaaaccat attttatcca tcttaaaaag caatcatttt tatcttcagc
      241 ttctgttgtt tattcttatg acaaagatga cacccaacat tctcagcctt tgttagctca
      301 gatggattgc aattatcatg gatatgttgc aggttttcca aattctcttg tatccctcaa
      361 catttgttca ggactcaggg gaatattgca gtttaaaaac atctcatatg gaattgaacc
      421 aatggaagct gtatcaggat tcatgcacat gattcatgaa gaaaaaaatg atataactaa
      481 tattcctctg ttatgggaaa atgacactta tatctatgat agctcacagt atcaagtcag
      541 aaaaagttca gaaagacctg gctatttcaa gttattcccc cgatatcttg atatgtatat
      601 tattgtggat aaaaatctgt ttgattacat gggctctgat gtaaaagttg taacacagaa
      661 ggttattcag atcattggct ttgttaacac tatgcttacc cagttaaaac tgactgttaa
      721 aatatcttcc atagagattt ggtcaaacaa aaacaaaatt tctactacaa gtcatcctaa
      781 tcatatatta tatagacttt tagaatggaa atacgaattt ctctcccggc ctcatcatac
      841 tgtatactta tttgccttcc agaaaagtcc tacttttata ggagccacac atcctgcaaa
      901 aatatgtgat aagaattttg ctggaggagt tgctttgtat tcagagggtt tatccttgga
      961 gtcatatgct ctcagtattg tgcagttgct tggccttaac atgggaatga gttatgataa
     1021 tactgagatc tgccactgtt caggagatgt ttgcacaatg tcaccaaaag ctgtgctatc
     1081 tgggggtata aaggatttta gcacttgtag cttggatgac tttaaatatt ttgctgcaca
     1141 ttctggcctt gaatgtcttc gtaaaatcct tcctgttggg ccagtttaca aacagtggaa
     1201 ggtgtgtggc aatggaaagt tggaatcggg tgaagaatgt gattgcggca ctttacagaa
     1261 ttgtacacat ccaaactgct gtgatcctag aacatgtaca aagaaaaaaa ataaaatatg
     1321 tggttcgggg gaatgctgca cacgagattg caagataaaa ccagttaata caccttgtag
     1381 gaaaatagtt gatgaatgtg attttctaga attctgtgat gggaaaaacg cacactgtgt
     1441 gcctgacact tatgcacgtg atggacagag ttgtgattcg ggtgactcct tctgttacaa
     1501 aggacgatgt cggtcgttta ccagacagtg cagaaaatta attggaggag catctagagg
     1561 tgctccattt gcttgttttg atgaaataaa ttcaagagga gataaatttg gaaactgtgg
     1621 ccgaaagtat tgtaattacc ccaatatgtt atgtggaaaa ttagtttgta cctggcctca
     1681 caaagcttta gtaagacgca gaaatttatc tgtgatttat acacatgtac gagatgacgt
     1741 gtgtacatca acatttctac acacagagag gacacctaga aaaacagtga ccacagttga
     1801 aaaacctgaa gacagagatc aaacatttgt agaagatggc actgtgtgtg gtcctgaaat
     1861 gtattgtctg agatttaact gtgtagagct taaataccat gtcaattttc agagttgcaa
     1921 ttctgccaga gattgtaatt caaatggagt ctgcaacaat tttaacaatt gccattgtaa
     1981 aatggggttt gctcctcctc gttgcaagcc aatggcagga gattttggaa gtattgatga
     2041 tggacacagg ggcaaagttg gtaaaaagtt tttgctggag agatctctca gtcatccaaa
     2101 acacagattt caactgattt tctacatttc tctacctgtg ttcatcatta ttattgctgt
     2161 tatcataagc cagagtaaaa taagggagct atgctacaga ggagaacctg aaagtgagag
     2221 atctgtgtca gaagaaagca gcagtaacag caagttgtca ctcagtgtaa gtaacagtct
     2281 ctaacaatct tggcctgaag agaggatggt accaaataaa tcaccagaaa ctggcctaaa
     2341 ccaagaagga aaaaacaaat ttctc
//
LOCUS       XM_032618656            1266 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein FAM90A1-like (LOC116746889),
            mRNA.
ACCESSION   XM_032618656
VERSION     XM_032618656.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 72% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1266
                     /gene="LOC116746889"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins"
                     /db_xref="GeneID:116746889"
     CDS             1..1266
                     /gene="LOC116746889"
                     /codon_start=1
                     /product="protein FAM90A1-like"
                     /protein_id="XP_032474547.1"
                     /db_xref="GeneID:116746889"
                     /translation="MSGSLHASREALDHEVASTTAILAILRSPAWIGARYGSGSDRHG
                     VVVGLTVVITREEPRVTIDMAVQQVKKQNLGTGRQVAPPPKDEDPRVKCRDCGAFGHK
                     ARSLRCPMKRCHGALAPQPLGSKLGKENLEPRKLQDLQTPGTPNTAEREKGERQRKEE
                     QQRKLLQRFPRKPQGWRQQYWKEGTESCHYLRHPNMPVLTQASTRKPLRDPHLPSRSP
                     VRKDDRIPTHPAVSLISRRLVQDSKSSIKAPGKRSAQIPIRTCLNPPKKPRLSPIQTP
                     QKSTLTADLGASQNLPPPPSTTGPTGTPQVSRKTPAQGQSLALKPPLDRSRPNSVQAC
                     TRHHPPPISHVPGQPLRILFVRVDEGRWSCRYVAPPSLPRPEQSAPPPTGRKPEGHWA
                     PGPRSVLYDDLQVSSSSEDSDWEGHANGS"
     misc_feature    268..393
                     /gene="LOC116746889"
                     /note="Zinc knuckle; Region: zf-CCHC_6; pfam15288"
                     /db_xref="CDD:464616"
ORIGIN      
        1 atgagcggca gcctgcatgc cagccgggag gcattggatc atgaggtcgc gtctacgacg
       61 gccatcttgg ccatcctgag aagtccagcc tggatcggtg ccaggtacgg cagtggctcc
      121 gacaggcatg gagttgtcgt tggccttacc gtcgtcatca cacgggagga accgcgggtg
      181 accattgaca tggcagtcca gcaagtgaag aagcaaaacc tgggcacagg gaggcaggtg
      241 gctcccccgc caaaggatga agaccccagg gtgaagtgta gggactgcgg agcctttggg
      301 cacaaagcga ggagcctcag gtgccccatg aagcgctgtc atggggccct ggccccccag
      361 cccttgggct ccaaacttgg caaggagaac ctggaaccac ggaagctgca ggacctgcag
      421 acgcctggga cccctaacac agctgagaga gagaagggtg aaaggcaaag gaaagaagag
      481 cagcagagga agctactcca gagatttccc aggaaacccc aagggtggcg gcagcagtac
      541 tggaaggagg ggacagaatc ctgccactac ctgaggcatc caaacatgcc cgtgctcacc
      601 caggcatcca cgaggaaacc cctccgggat ccacatctcc ccagtaggtc acctgtcagg
      661 aaggatgaca ggatacccac ccaccctgca gtgtctctca tcagcagaag gttggtccag
      721 gactccaaaa gcagcatcaa ggccccaggc aagaggtctg cccagatccc catccggaca
      781 tgtctgaacc ccccaaagaa acctagactc agccccatcc agactcccca gaagagcact
      841 ctgacagcag atctgggggc ttcccagaat ctccctcctc cacccagtac aaccggaccc
      901 acagggaccc cccaagtcag caggaagaca cctgcccagg ggcaaagcct tgccctcaaa
      961 cctccactgg acagatctcg ccccaatagt gtccaagcct gcaccagaca ccatcctcca
     1021 cccatcagcc atgttccagg ccagcctctc aggatactct tcgtgagagt agacgaaggc
     1081 cggtggagct gcaggtacgt ggcgcctccc tccttgcctc gtcctgagca gtcagcccct
     1141 cctcccactg gcaggaagcc tgagggacac tgggcccctg gcccccggag tgtcctctac
     1201 gatgaccttc aggtgtcttc ttcctctgaa gacagcgact gggagggaca cgccaatggc
     1261 agctaa
//
LOCUS       XM_032618657             810 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 829-like
            (LOC116746890), mRNA.
ACCESSION   XM_032618657
VERSION     XM_032618657.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 20% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..810
                     /gene="LOC116746890"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 14% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746890"
     CDS             1..810
                     /gene="LOC116746890"
                     /codon_start=1
                     /product="zinc finger protein 829-like"
                     /protein_id="XP_032474548.1"
                     /db_xref="GeneID:116746890"
                     /translation="MEPLESVTLEDVAINFTQEEWALLDTSQKTLFRNVMLENITHLV
                     SVGNQISKSDVISQLEQGKELRKSNVSKQHGKSLSQGSFLDKQDHIHTRAKSYECPLC
                     GKVFSRCSTLIRHKMIHTGEKPFKCNLCGKVFNQSSSLKQHEKTHTGEKCYECHQCGK
                     AFLQSSGLSSHKKIHTGEKPHVCLECGKAFSHSSGLSSHKRIHTGEKPHVCLLCGKAF
                     SEHAKLREHERTHTGERPYECQWCGKCFSRGCSLRRHEGTQHWRESQEGPQ"
     misc_feature    19..195
                     /gene="LOC116746890"
                     /note="krueppel associated box; Region: KRAB; smart00349"
                     /db_xref="CDD:214630"
     misc_feature    <133..765
                     /gene="LOC116746890"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    223..273
                     /gene="LOC116746890"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    295..357
                     /gene="LOC116746890"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(295..297,304..306,343..345,355..357)
                     /gene="LOC116746890"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(310..312,316..318,322..324,328..333,340..345,
                     352..354,394..396,400..402,412..417,424..429,436..438,
                     478..480,484..486,490..492,496..501,508..513,520..522)
                     /gene="LOC116746890"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    379..441
                     /gene="LOC116746890"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    463..525
                     /gene="LOC116746890"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    547..609
                     /gene="LOC116746890"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    631..693
                     /gene="LOC116746890"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    715..765
                     /gene="LOC116746890"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 atggagcctc tggaatcagt gacgttggaa gatgtagcga tcaacttcac ccaggaagag
       61 tgggccctgc tggacacatc ccagaaaacc ctgttcagaa acgtgatgct ggaaaatatc
      121 acccacctgg tctccgtagg gaatcagatc agcaaatcag atgtgatttc ccagctcgaa
      181 caaggaaaag agctaaggaa aagtaatgtc agcaaacagc atggaaaatc acttagtcaa
      241 gggtcattcc ttgacaaaca agatcacatt cacactagag ctaaatcgta tgaatgtcct
      301 ctatgtggga aagtctttag tagatgctct acactcataa gacacaagat gattcacact
      361 ggagagaaac cattcaaatg caatctgtgt gggaaagtct tcaatcaaag ttcctccttg
      421 aaacaacatg agaaaactca cacaggagag aagtgctatg aatgtcatca gtgtggtaaa
      481 gcctttcttc aaagctctgg ccttagttcg cacaagaaaa tccacactgg agagaaacca
      541 cacgtatgtc ttgagtgtgg gaaggccttc agtcacagtt cagggcttag ttcgcacaag
      601 agaatccaca ctggagagaa accacatgta tgcctcctgt gtgggaaggc cttcagtgaa
      661 catgctaaac tgagagaaca tgagagaacc cacactggag agaggcccta tgaatgtcag
      721 tggtgtggga aatgcttcag tcgaggctgt tccctgagac gacatgaggg aactcagcac
      781 tggagagaaa gtcaggaggg ccctcagtag
//
LOCUS       XM_032618658             213 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus sperm-associated antigen 11-like
            (LOC116746893), mRNA.
ACCESSION   XM_032618658
VERSION     XM_032618658.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..213
                     /gene="LOC116746893"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins"
                     /db_xref="GeneID:116746893"
     CDS             1..213
                     /gene="LOC116746893"
                     /codon_start=1
                     /product="sperm-associated antigen 11-like"
                     /protein_id="XP_032474549.1"
                     /db_xref="GeneID:116746893"
                     /translation="MKVLFLFAVLFCLVQMNSGDIPPAIRNVICLMQRGTCRLFFCYS
                     GEKKAEICSDPWNRCCIPHTEEEKNK"
     misc_feature    76..180
                     /gene="LOC116746893"
                     /note="Beta defensin; Region: Defensin_beta; pfam00711"
                     /db_xref="CDD:459914"
ORIGIN      
        1 atgaaggtcc tctttctgtt cgctgttctc ttctgtttgg tccaaatgaa ctcaggggac
       61 attccacctg caattagaaa tgttatctgt cttatgcaac gtggaacctg cagacttttt
      121 ttctgctatt ctggtgagaa aaaagctgaa atctgctccg atccctggaa taggtgctgc
      181 ataccacata cagaggaaga aaaaaataaa taa
//
LOCUS       XM_032618659             573 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus voltage-dependent anion-selective channel
            protein 3-like (LOC116746894), mRNA.
ACCESSION   XM_032618659
VERSION     XM_032618659.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 21% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-23                VOSU01000013.1     8028660-8028682     c
            24-121              VOSU01000013.1     8028006-8028103     c
            122-162             VOSU01000013.1     8025141-8025181     c
            163-164             "NN"               1-2
            165-573             VOSU01000013.1     8024732-8025140     c
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..573
                     /gene="LOC116746894"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 30 Proteins, and 58% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746894"
     CDS             1..573
                     /gene="LOC116746894"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: voltage-dependent
                     anion-selective channel protein 3-like"
                     /protein_id="XP_032474550.1"
                     /db_xref="GeneID:116746894"
                     /translation="MARWHTFRFPLSQRSLGYTETQWGIQEMKGYNLEILAPKHDFSG
                     PTIYGWAVLAXWFAGYQTSFDTAKSKLSQNHFALGYKPADFQLPTHVSDSTESGGAIY
                     QKVNKKTKTSINLAWMAGRNTTHFGISAKYKLDCRTSLSAKVNNASLIGLGYTQTFRP
                     GVKLTLSALIYGKNFSAGGHKVGLGYELEA"
     misc_feature    <124..567
                     /gene="LOC116746894"
                     /note="Voltage-dependent anion channel of the outer
                     mitochondrial membrane; Region: Porin3_VDAC; cd07306"
                     /db_xref="CDD:132767"
ORIGIN      
        1 atggcgcgct ggcacacctt caggttcccc ttgtcccagc ggtcactggg atacacagaa
       61 acgcaatggg gaatccagga aatgaagggc tacaatcttg aaattttagc accgaagcat
      121 gatttttctg gaccaaccat ctacggctgg gctgtgttgg ccnnatggtt tgctggctat
      181 cagacgagtt ttgacacagc caaatccaaa ctgtcacaga atcatttcgc cctgggttac
      241 aagcctgcag acttccagct gcccactcac gtgagcgata gcactgaatc tggaggggcg
      301 atctaccaga aggtgaacaa gaagaccaaa acatcaataa acctcgcgtg gatggctggc
      361 aggaacacca cccatttcgg catctctgct aagtacaagc tggactgtag aacttctcta
      421 tctgctaaag tgaataatgc cagcctgatt ggactgggtt acactcagac ctttcgacca
      481 ggagtgaaac tgaccctgtc agcgctcatc tacggaaaga acttcagtgc aggagggcac
      541 aaggttgggc tgggatatga gctagaagct taa
//
LOCUS       XM_032618661            1622 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet derived growth factor receptor
            like (PDGFRL), transcript variant X1, mRNA.
ACCESSION   XM_032618661
VERSION     XM_032618661.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1622
                     /gene="PDGFRL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 8 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746895"
     CDS             177..1304
                     /gene="PDGFRL"
                     /codon_start=1
                     /product="platelet-derived growth factor receptor-like
                     protein isoform X1"
                     /protein_id="XP_032474552.1"
                     /db_xref="GeneID:116746895"
                     /translation="MKVWLLLGLLLVHEALEDVTGQHPPKNKHPKEPGENRIKPTNKK
                     VKPKIPKIKDRDSADSTPKTQSIMMQMIDKGRFQKPAATLSLMAGQTLELRCKGNKIR
                     WSYPAYLDTFKDTRLSVKQHERYGQLTLVNSTAADTGEFSCWGQLCNGYICRRDEAKT
                     GSTYIIFTEKGELFVPSPSYFDVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIQA
                     NGTDIVYDMKRGFVYLQPHSDHQGVVYCKAEAGGKSQISVKYQLLYAEVPSGPPSTTI
                     LASADKVKGGDDISVLCTVLGEPDVEVEFRWIYPGQKDERPVTIQDTWRLIHRGLGHT
                     TRISQSVLIVEDFEMVDAGYYICTAQNLRGQTSVATTVEFS"
     misc_feature    423..>605
                     /gene="PDGFRL"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    1020..1292
                     /gene="PDGFRL"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1041..1055
                     /gene="PDGFRL"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1086..1100
                     /gene="PDGFRL"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1194..1208
                     /gene="PDGFRL"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1236..1253
                     /gene="PDGFRL"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1275..1286
                     /gene="PDGFRL"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      
        1 ccaaactttc cccccaaatc tgttcttcct catgaaactg aatcctccag ctgcggcgtc
       61 ccaggcgccc gcccctcgcc cgccgcctcc cctggcgccc ctgccctcgc cctgcgcttt
      121 ccgcgcgccc cggacctgct gtcccccgca cctctgcccc accccttgcc ctgaagatga
      181 aggtctggct gctgctgggt cttctgctgg tgcacgaagc gctggaggac gttacgggtc
      241 aacatccccc caagaacaag catccaaagg agcctggaga gaacagaatc aagcctacca
      301 acaaaaaggt gaaacccaaa attcctaaaa taaaggacag ggactccgct gactcaacac
      361 caaagacaca gtctataatg atgcaaatga tagataaagg tcgctttcag aaacccgctg
      421 caaccctgag tctgatggca gggcaaactc tagagcttcg atgtaaaggg aataagatca
      481 gatggagcta tcccgcatac cttgacacct ttaaggacac ccgcctcagt gtgaagcagc
      541 acgagcgcta cggccagctg accctggtca actccaccgc ggccgacacg ggtgaattca
      601 gctgctgggg gcagctctgc aacggctata tctgcaggag ggacgaggcc aaaacgggct
      661 ccacctacat catttttaca gagaaaggag aactctttgt accttctccc agttactttg
      721 atgtcgtcta cttgaacccg gacagacagg ctgtggttcc ttgtcgagtg actgtcctgt
      781 cggccaaagt cacgctccac agggagttcc cggccaagga gatccaggcc aacggaacag
      841 acatcgttta tgatatgaag agaggctttg tgtatctgca gcctcactct gaccaccagg
      901 gggtggtcta ctgcaaggcg gaggccgggg gcaagtctca gatctctgtc aagtaccagc
      961 tgctctatgc agaagttccc agtggtcctc catcaacaac catcttggca tctgcagaca
     1021 aagtgaaggg tggggatgac atcagcgtcc tctgcacggt cctcggggag ccggatgtgg
     1081 aggtggaatt caggtggatc tacccagggc agaaggatga aaggcccgtg acgattcaag
     1141 acacttggcg gctgatccac agaggactgg gccacaccac gaggatctcc cagagcgtcc
     1201 tgatcgttga agactttgag atggttgacg caggttatta catttgcacc gctcagaatc
     1261 tccgaggaca gacctcagta gctaccactg tggagttttc ctgacttgga agatgaagta
     1321 taaatgaatt gatggaaagc ccacttgtgt acacaaccag ctccagggtt cttttgacta
     1381 gtgctttgcc agaggctgat gtcgagcgcc aaaccccagg ccctgccttg tgagtcagac
     1441 ccagacctcc aaactaaaag gaagtcaccc ggtctaatta tagaagtgtt aattctagca
     1501 gaaagcatgt attctgactg ctgacctaca tatatgggtt tctagtgttt atactaaggc
     1561 ggcatatatg taaacaactt tatataatca tttctattaa acgagcaagt ttttgtaaaa
     1621 aa
//
LOCUS       XM_032618662            1654 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus platelet derived growth factor receptor
            like (PDGFRL), transcript variant X2, mRNA.
ACCESSION   XM_032618662
VERSION     XM_032618662.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1654
                     /gene="PDGFRL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746895"
     CDS             174..1151
                     /gene="PDGFRL"
                     /codon_start=1
                     /product="platelet-derived growth factor receptor-like
                     protein isoform X2"
                     /protein_id="XP_032474553.1"
                     /db_xref="GeneID:116746895"
                     /translation="MKVWLLLGLLLVHEALEDVTGQHPPKNKHPKEPGENRIKPTNKK
                     VKPKIPKIKDRDSADSTPKTQSIMMQMIDKGRFQKPAATLSLMAGQTLELRCKGNKIR
                     WSYPAYLDTFKDTRLSVKQHERYGQLTLVNSTAADTGEFSCWGQLCNGYICRRDEAKT
                     GSTYIIFTEKGELFVPSPSYFDVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIQA
                     NGTDIVYDMKRGFVYLQPHSDHQGVVYCKAEAGGKSQISVKYQLLYAEVPSGPPSTTI
                     LASADKVKGGDDISVLCTVLGEPDVEVEFRWIYPGQKPRWVSFNRMKGP"
     misc_feature    420..>602
                     /gene="PDGFRL"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
ORIGIN      
        1 aactttcccc ccaaatctgt tcttcctcat gaaactgaat cctccagctg cggcgtccca
       61 ggcgcccgcc cctcgcccgc cgcctcccct ggcgcccctg ccctcgccct gcgctttccg
      121 cgcgccccgg acctgctgtc ccccgcacct ctgccccacc ccttgccctg aagatgaagg
      181 tctggctgct gctgggtctt ctgctggtgc acgaagcgct ggaggacgtt acgggtcaac
      241 atccccccaa gaacaagcat ccaaaggagc ctggagagaa cagaatcaag cctaccaaca
      301 aaaaggtgaa acccaaaatt cctaaaataa aggacaggga ctccgctgac tcaacaccaa
      361 agacacagtc tataatgatg caaatgatag ataaaggtcg ctttcagaaa cccgctgcaa
      421 ccctgagtct gatggcaggg caaactctag agcttcgatg taaagggaat aagatcagat
      481 ggagctatcc cgcatacctt gacaccttta aggacacccg cctcagtgtg aagcagcacg
      541 agcgctacgg ccagctgacc ctggtcaact ccaccgcggc cgacacgggt gaattcagct
      601 gctgggggca gctctgcaac ggctatatct gcaggaggga cgaggccaaa acgggctcca
      661 cctacatcat ttttacagag aaaggagaac tctttgtacc ttctcccagt tactttgatg
      721 tcgtctactt gaacccggac agacaggctg tggttccttg tcgagtgact gtcctgtcgg
      781 ccaaagtcac gctccacagg gagttcccgg ccaaggagat ccaggccaac ggaacagaca
      841 tcgtttatga tatgaagaga ggctttgtgt atctgcagcc tcactctgac caccaggggg
      901 tggtctactg caaggcggag gccgggggca agtctcagat ctctgtcaag taccagctgc
      961 tctatgcaga agttcccagt ggtcctccat caacaaccat cttggcatct gcagacaaag
     1021 tgaagggtgg ggatgacatc agcgtcctct gcacggtcct cggggagccg gatgtggagg
     1081 tggaattcag gtggatctac ccagggcaga agccccggtg ggtgtcgttc aacaggatga
     1141 aaggcccgtg acgattcaag acacttggcg gctgatccac agaggactgg gccacaccac
     1201 gaggatctcc cagagcgtcc tgatcgttga agactttgag atggttgacg caggttatta
     1261 catttgcacc gctcagaatc tccgaggaca gacctcagta gctaccactg tggagttttc
     1321 ctgacttgga agatgaagta taaatgaatt gatggaaagc ccacttgtgt acacaaccag
     1381 ctccagggtt cttttgacta gtgctttgcc agaggctgat gtcgagcgcc aaaccccagg
     1441 ccctgccttg tgagtcagac ccagacctcc aaactaaaag gaagtcaccc ggtctaatta
     1501 tagaagtgtt aattctagca gaaagcatgt attctgactg ctgacctaca tatatgggtt
     1561 tctagtgttt atactaaggc ggcatatatg taaacaactt tatataatca tttctattaa
     1621 acgagcaagt ttttgtaaaa aacaaaaaat gggc
//
LOCUS       XM_032618663            1791 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746896
            (LOC116746896), mRNA.
ACCESSION   XM_032618663
VERSION     XM_032618663.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 50% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1791
                     /gene="LOC116746896"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 38% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746896"
     CDS             1..1791
                     /gene="LOC116746896"
                     /codon_start=1
                     /product="uncharacterized protein LOC116746896"
                     /protein_id="XP_032474554.1"
                     /db_xref="GeneID:116746896"
                     /translation="MEKNRGPTTSPAELPTHSYTNMAAPWKWTLSPTDPTQSKPPVAP
                     PERPPRSEPEDREAEALPALLPNENNSPGPAGRTRGRTQRDPGFRHPDSTTALPLREI
                     GPPDETGNPRLQYWPFSTSDLYNWKTQNARFSDNLKDLIALLDSVMFTHQPTWDDCQQ
                     LLRILFTTEERERIQLEARKLVPGDDGQPTANPDLINAGFPLTRPLQDDWDYNTGEGR
                     GRLLIYRQTLMAGLRAAARKPTNLAKVYSIVQGKTESPSSYLERLMEAFRQYTPMDPE
                     APENQAAVVMSFVNQAAPDIKKKLQKLEDLEGKQIQDLLRIAQRVFNNRDAPEDKQLK
                     ATEKMTKVLAAIVQKDQGGPPATRPPRRPLDRDQCAYCKEKGHWARECPKKRQPRPNQ
                     GQWQPKATTPVLFTHDAEWGDGVRTPSPNPGLPQGFKNSPTLFDEALHEDLSEYRRQN
                     PNITLLQYVDDLLIAAGTTEACLQGTRNLLQTLGTLGYRASAKKAQICRPELRPGDWV
                     LVKRHRQETLEPRWKGPYQIILTTPTAIKVDSIAAWIHYTHVKPVDPLSDLIKSTKAD
                     VTWTVDRSKDNPLKLTLRHTLPHEDQGINA"
     misc_feature    340..969
                     /gene="LOC116746896"
                     /note="Gag P30 core shell protein; Region: Gag_p30;
                     pfam02093"
                     /db_xref="CDD:426597"
     misc_feature    1102..1152
                     /gene="LOC116746896"
                     /note="zinc finger; Region: ZnF_C2HC; smart00343"
                     /db_xref="CDD:197667"
     misc_feature    <1270..1509
                     /gene="LOC116746896"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
                     /db_xref="CDD:477363"
     misc_feature    1279..1281
                     /gene="LOC116746896"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238185"
     misc_feature    1507..1752
                     /gene="LOC116746896"
                     /note="Murine leukemia virus (MLV) integrase (IN)
                     C-terminal domain; Region: MLVIN_C; pfam18697"
                     /db_xref="CDD:436671"
ORIGIN      
        1 atggagaaga acaggggccc caccactagc ccagctgagc tcccaaccca cagctacacc
       61 aacatggcag ctccttggaa gtggacgctc agtcccactg accccacaca gagcaaacct
      121 cctgtggccc ctcccgagag gccacccagg tcagaaccgg aggaccgaga ggcagaggca
      181 ctgccggccc tcctgcccaa tgaaaataac tcccctgggc cggctggacg cacccgtgga
      241 cgcactcagc gcgacccagg gttccgccat ccagattcca ccacagccct acccctgcga
      301 gaaataggcc ctcccgatga gacagggaac ccccgactcc aatattggcc attctctacc
      361 agtgacttat ataattggaa aacccagaat gctcgttttt ctgataatct taaagacttg
      421 atagctcttc tagatagtgt tatgtttacc catcagccca cctgggatga ctgccaacag
      481 cttctccgga tcctgttcac taccgaggaa cgagaacgaa tccagctgga ggcaagaaaa
      541 ctggttcctg gagatgatgg tcaacccacc gctaaccctg atcttattaa tgcaggcttt
      601 cccttaactc gccccctgca ggatgattgg gactacaaca ccggagaagg taggggacga
      661 ctgctcattt atcgccagac tctaatggcg ggtctccggg ctgccgcgcg caagcccact
      721 aatttggcca aggtatattc aattgtacaa ggtaaaacag aaagtccctc ctcttattta
      781 gaaagattaa tggaagcctt taggcaatat acccctatgg atccagaggc ccccgaaaat
      841 caggctgccg ttgtaatgtc cttcgttaac caggcagccc ctgatattaa aaagaaactc
      901 cagaagttag aagatctgga gggcaaacag atacaggacc tactccgtat tgctcagcgc
      961 gtctttaata accgagacgc cccagaggat aaacaactta aagccactga gaaaatgact
     1021 aaggtcctgg ccgccattgt tcagaaagat caagggggcc ccccagccac tcgacctccc
     1081 aggcgaccat tggacagaga tcaatgtgcc tattgcaagg aaaaaggcca ttgggctcgg
     1141 gaatgcccca aaaaaaggca gccgcgcccc aaccaggggc aatggcaacc gaaggccacc
     1201 accccagtcc tgtttacaca tgatgcagag tggggggacg gggttcggac cccctccccg
     1261 aacccaggac ttccccaagg attcaagaac tcacctacct tgtttgatga ggccctacac
     1321 gaggatctca gtgagtaccg gagacaaaac cccaatataa ccctcctgca gtatgttgat
     1381 gatctcttaa tagctgctgg gaccactgaa gcctgcctgc agggaaccag aaacctccta
     1441 cagactctcg gcaccctggg ataccgggcc tctgccaaaa aggcgcagat ctgcaggcct
     1501 gagctccgac caggtgactg ggtccttgtc aaacgccatc gacaagagac cctagaaccc
     1561 aggtggaaag gaccttacca gatcatcctg acaacaccga cggccatcaa ggtggacagc
     1621 atagctgcct ggatccatta cacccacgtc aagccggtgg acccactttc tgacctcatc
     1681 aagtccacta aagctgacgt cacctggacg gttgatcgga gtaaggacaa tcccctcaaa
     1741 ctgaccttac gccataccct cccccatgag gaccaaggaa tcaatgcata g
//
LOCUS       XM_032618664            1329 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus putative cuticle collagen 155
            (LOC116746897), mRNA.
ACCESSION   XM_032618664
VERSION     XM_032618664.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1329
                     /gene="LOC116746897"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 93% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746897"
     CDS             1..864
                     /gene="LOC116746897"
                     /codon_start=1
                     /product="putative cuticle collagen 155"
                     /protein_id="XP_032474555.1"
                     /db_xref="GeneID:116746897"
                     /translation="MRTRGRGLAAAGRYQSVSRGGLGLPERTPHAPGRFLPDSDEQGK
                     GRPSRLHSRWGPGAPWGERPGNSSVPTAPARGQDPAEPPCDPEAQPPGRPAGPRSPAV
                     TQPCGPAGSTRRGRPEATAPGKQGQVQFLFATPCGRAQGTRLPSTLFRSGRPAGHAAR
                     GSLVVTGQQLALLSRRLLWSADCVPRGVGWTCEPPAGALPARGLPPARPAEDAAEGPR
                     TWRSLPGLESDSPGLQTRQLGEVERTCLTWSPASGVKVDARLAGGAPKLTCPHGLTPQ
                     PFLLQGITGDT"
     misc_feature    <73..831
                     /gene="LOC116746897"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 atgcgcaccc gggggcgggg tctagcggcg gccgggcgct accaaagcgt tagccggggg
       61 ggcctcgggc tccccgaacg cacccctcac gccccaggtc gattcctccc ggacagtgat
      121 gagcaaggca agggtcgccc tagccgactg cactcgcgct ggggtcctgg ggccccctgg
      181 ggggagcggc ccggcaactc ttctgtgccc accgccccgg cccgcggaca ggacccggca
      241 gagcccccat gtgaccccga agcccagccc cccggaaggc ccgctgggcc gcgcagcccg
      301 gccgtgactc agccctgcgg ccctgccggg tccacgcgca gaggccggcc cgaggccacg
      361 gcgcccggga agcagggtca agtgcagttt ctcttcgcca ctccctgcgg ccgtgcgcag
      421 gggacccggc ttccctccac cctgttccgc tcaggccggc cggctgggca tgcggcccga
      481 gggtcgctgg ttgtgacggg gcagcagctg gcattgctca gcaggcggct cctgtggtcg
      541 gcggactgcg tcccgcgggg tgtgggatgg acgtgtgaac cgccagccgg cgccctcccc
      601 gcccgcggcc tcccgcccgc gaggcccgca gaagatgcag ccgaggggcc cagaacctgg
      661 cgcagcctcc cgggcttgga gtcggacagc cctgggctcc agactcgcca gctgggagag
      721 gttgagagaa cctgcttaac ctggagcccg gcctcgggtg tgaaggtgga cgcccgcctg
      781 gccgggggcg ccccgaagct cacgtgtccc catggtctca ccccgcagcc tttcttactt
      841 cagggtataa ctggtgatac ataacccagc agaactgaga agactttgaa tgaaatgcac
      901 cctgattctt gctcacaacc tgtcataccc agtgaggcac ccaggtttcc agcctggcca
      961 ctggcccccc gaggtccatc tcctcccagc tccagccctc tccctgcctg acagcaaggt
     1021 cactgtgtgt gtgacatcaa gctaagccct ttctgtaaat ggtcctttcc cacctcagtt
     1081 gaacggcagg ctcttggacg ctcttaccca cgtgtcttag atgaggaaac aggttcacgt
     1141 cggtgaggtt gggccttgtt ctgcttccta cagcagctca ggatgaggct gagttttggg
     1201 gtttcacgcc gtgaggactt gaagaggact aaaaactccc caggaggcgg ccaggacggc
     1261 atctcgtttt tttctgatcg tataagtaat acatgctcat tgtttgttta attaagaaaa
     1321 aaacgggct
//
LOCUS       XM_032618665             772 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746898
            (LOC116746898), mRNA.
ACCESSION   XM_032618665
VERSION     XM_032618665.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 8% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..772
                     /gene="LOC116746898"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 92% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746898"
     CDS             1..714
                     /gene="LOC116746898"
                     /codon_start=1
                     /product="uncharacterized protein LOC116746898"
                     /protein_id="XP_032474556.1"
                     /db_xref="GeneID:116746898"
                     /translation="MGHQIVPSASSEFPGSAPTFLQRSSPAYVSIQPPAACDPHHHTA
                     LCPLLLLGLGGPDISVCKSPSPGPLEGFDLGDPKPAATSTLNISRDSVGQRESRAESV
                     HALGAESPPCGVSCPRDLGQHLQCRPPDGSSSPLSNTTLPESPRAWSNPICPYAAAAC
                     TSDPWSQRRESPAAHETSPSPSQVATLGTLHCPPQLWTRVLRSPTRWEKLMVNGMLPT
                     EAGFGFSSAPGEQRGFGAG"
ORIGIN      
        1 atgggccatc agattgttcc ctcagcatcc tcagagtttc ctggctccgc gcccacattc
       61 ctgcagcgta gcagccctgc ctacgtgagc attcagcccc cagcagcatg tgatcctcac
      121 caccacactg ccctctgccc tctgctcttg ctaggcctag gaggtccaga catctccgtg
      181 tgcaaatccc caagccctgg gccattggag ggctttgatc tcggtgatcc aaagccagca
      241 gctaccagca cacttaacat ttcacgtgat tctgttggac agcgtgagtc cagagccgag
      301 tcagttcatg ctttgggagc agagagtcct ccgtgtgggg tgtcctgccc gcgagacctt
      361 gggcagcatc tccagtgtcg tccaccagat ggcagtagct cccctctctc caacacgact
      421 ttgccagagt ccccaagggc ttggagtaac cccatctgtc catatgctgc agctgcctgc
      481 acatcagacc cctggtcaca gagacgagag agcccagctg cgcacgaaac ctcaccaagt
      541 cccagccaag tagctacact ggggaccctc cactgccctc cacagctctg gacacgtgta
      601 ctgagatccc ccaccaggtg ggagaagtta atggttaatg gcatgctgcc cacagaggcc
      661 ggatttggct tcagctctgc gccaggtgaa cagagagggt ttggagccgg atgaggcgtt
      721 gtgggcttgc aaactggctg ctctcaggat gaagcctgat gacgacatgt ct
//
LOCUS       XM_032618666             814 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus signal peptidase complex subunit 2-like
            (LOC116746900), mRNA.
ACCESSION   XM_032618666
VERSION     XM_032618666.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 1% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-444               VOSU01000013.1     12934412-12934855
            445-445             "N"                1-1
            446-814             VOSU01000013.1     12934856-12935224
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..814
                     /gene="LOC116746900"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746900"
     CDS             1..669
                     /gene="LOC116746900"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: signal peptidase complex
                     subunit 2-like"
                     /protein_id="XP_032474557.1"
                     /db_xref="GeneID:116746900"
                     /translation="MAAAAQGGRTSGGGGSSGDGSGSSCGTGSSRSGLLDKWKIDDKP
                     VKTDKWDGSAVKNSLDDSAKKVLLEKYKYVQNFGLIDGRLIICTISCFFAIVTLIWDY
                     MHPFPESKPVSALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTXDDIWQLSSSLK
                     RFDEKYTLKLTFISGRTKQQREAEFTKSTAKFFDHNGTLVMDAYEPEISRLHDSLATE
                     RKIK"
     misc_feature    178..639
                     /gene="LOC116746900"
                     /note="Microsomal signal peptidase 25 kDa subunit (SPC25);
                     Region: SPC25; pfam06703"
                     /db_xref="CDD:461993"
ORIGIN      
        1 atggcggcgg ctgctcaggg agggagaacc agtggtggcg gaggcagtag tggggatggc
       61 agtggttcca gctgtgggac aggcagtagc cgcagcggct tgctggacaa gtggaagatt
      121 gatgataagc ctgtaaaaac tgacaaatgg gatggatcag ctgtgaaaaa ttctttggat
      181 gattctgcca aaaaggtact tctggaaaag tacaagtatg tgcagaattt tggtctaatt
      241 gacggtcgcc tcatcatctg taccatctcc tgtttcttcg ccatagtgac tttgatttgg
      301 gattatatgc acccctttcc agagtccaaa cctgtttcgg ctttgtgtgt tatatcctat
      361 tttgtgatga tggggatcct gaccatttat acctcatata aggagaagag catctttctc
      421 gtggcccaca ggaaagatcc cacangggat gatatttggc agctgtcgtc cagtctcaaa
      481 aggttcgatg aaaaatacac tctgaagctg accttcatca gtggaagaac aaagcagcaa
      541 cgggaagccg agttcaccaa gtccactgct aagttttttg accacaacgg gaccctggtc
      601 atggatgcat atgagcctga gatatccagg cttcatgaca gtcttgccac agaaagaaaa
      661 ataaaatagc tacttctaaa agcagccatc ttttggctgg atcatgctga attgaggggt
      721 gagggagaaa gaaacagaga acttaatatg gataaagtaa gaaatgtaaa acatgtccgt
      781 tttgtcttga aattttagtc cattctgtat aaac
//
LOCUS       XR_004347910             817 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746902
            (LOC116746902), ncRNA.
ACCESSION   XR_004347910
VERSION     XR_004347910.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..817
                     /gene="LOC116746902"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746902"
     ncRNA           1..817
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746902"
                     /product="uncharacterized LOC116746902"
                     /db_xref="GeneID:116746902"
ORIGIN      
        1 agaatccaga tgcccagtaa gaagagagga cccagtttcc catccacctc caccaagtga
       61 gaccttccag ctccaggcaa cccacctgcc gaatgcagct tcttgatcaa gcccaggcaa
      121 gaccagcaaa agaaccaccc agccaagcca caaaatcatg agaagctgaa gcttggatat
      181 cgtcatgacc cagctttgac agtgcaacta aggacaacat cctacgatga tgacgcacaa
      241 tgagatggga agcagccaga tccccagctg accagtctgg accactctgg ttgctggtgt
      301 cccagaaaag cacctgataa aaaagcaagt gttcaataag cctttcctga ttgattgaat
      361 gggtgcctga attgctggcc cagctgacac aacatctggc ccagacagag cgacacctga
      421 acagtctgat ggcccagctg gacccccgtt ttgagcgtgt gactaccctg gctggagccc
      481 agcaggagtt tctgcacatt gaatctgcag agcgagcacc agctgctaga agagagcaag
      541 acaaaacaag gctgtggaag ttccggagcc agaggccagt acaccctttc ctaaggtctt
      601 atgtatagag gagggcgagg aaggggctgg tgacagtcag accccagagg accccctaac
      661 ctggagcaca gggacaagaa acctagcaac acccagggaa atggtgtggg gggctaagga
      721 gcaaatgcag gaaggcggca gcaagggccc cgtcacagcc cccaactggg aaggagggac
      781 aacagctgac agtttagtaa aacaatctgt tcttatg
//
LOCUS       XM_032618667            3301 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 703 (ZNF703), mRNA.
ACCESSION   XM_032618667
VERSION     XM_032618667.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-450               VOSU01000013.1     29722724-29723173
            451-1278            VOSU01000013.1     29724179-29725006
            1279-1279           "N"                1-1
            1280-1335           VOSU01000013.1     29725007-29725062
            1336-1336           "N"                1-1
            1337-1419           VOSU01000013.1     29725063-29725145
            1420-1420           "N"                1-1
            1421-3301           VOSU01000013.1     29725146-29727026
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3301
                     /gene="ZNF703"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 long SRA read, 3 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746903"
     CDS             214..1980
                     /gene="ZNF703"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:976..978,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: zinc finger protein 703"
                     /protein_id="XP_032474558.1"
                     /db_xref="GeneID:116746903"
                     /translation="MSDSPAGSNSRTPESSGSGGGGKRPAVPAAVSLLPPADPLRQAN
                     RLPIRVLKMLSAHTGHLLHPEYLQPLSSTPVSPIELDAKKSPLALLAQTCSQIGKPDP
                     PPSSKLNSVAAANGLGAEKDPGRSASGAASASAALKQLGDSPAEDKSSFKPYSKGSGG
                     GDSRKDSGSSSVSSTSSSSSLSPGDKAGFRVPSAACTPFPPHGAPVSASSSSSSPGGS
                     RGGSPHHSDCKTGGGGAGGELDKKDQEPSPARSPRPXAEGSGGEPGAHGGAEAGASGR
                     KSEPPSALVGAGHVAPVSPYKPGHSVFPLPPSSIGYHGSIVGAYAGYPSQFVPGLDPS
                     KSGLVGGQLSGGLGLPPGKPPXLQPAHRGLPAVLPAGIMPXTPTAWEVTTAPRTSAAP
                     AAPPAARTTQXAPGLKAGGYPLVYPGHPLQPTALSSSAAQAALPGHPLYTYGFMLQNE
                     PLPHSCNWVAASGPCDKRFATSEELLSHLRTHTALPGAEKLLAAYPGASGLGSAAAAA
                     AAAASCHLHLPPPTAPGSPGSLSLRSPHTLGLSRYHPYGKSHLSTAGGLAVPSLPTAG
                     PYYSPYALYGQRLASASALGYQ"
     misc_feature    439..>579
                     /gene="ZNF703"
                     /note="N-terminal domain of transcription factor
                     Specificity Proteins (SP) 1-4; Region: SP1-4_N; cl41773"
                     /db_xref="CDD:425404"
     misc_feature    <760..1617
                     /gene="ZNF703"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1135..1290
                     /gene="ZNF703"
                     /note="NocA-like zinc-finger protein 1; Region: nlz1;
                     pfam12402"
                     /db_xref="CDD:403564"
     misc_feature    1579..1659
                     /gene="ZNF703"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 cggctcgcga aaggcgaagg tttttgtgtt gctcgccggg gctagcggcg gcggcggcgg
       61 cggcggcgac gtcgtcgtcg ttggaggagg ggtggaggcg cagcgactgc tgcaccgcgc
      121 tcggcgctgc ggagcgagcc cacccgcccc gggagctcgc ctcccggtgg tccccctccc
      181 tccccgcccc cccagtggcg ctgcctcctc caaatgagcg attcgcccgc tggatctaac
      241 tcaaggacac ccgaaagcag cggcagcggc ggcggcggga agaggccggc agtgccggcg
      301 gcggtgtccc tcttgcctcc ggcggacccc ctgcgccagg cgaaccggct ccctatcagg
      361 gtcctgaaga tgctgagcgc tcacaccggc cacctcctgc acccggagta cctgcagccg
      421 ctgtcctcca ctcccgtcag ccccattgag ctggacgcca agaagagtcc tttggcgttg
      481 ctggcccaga cttgctcgca gatcggcaag ccggacccgc cgccctcgtc caagctcaac
      541 tcggtagcgg cggccaacgg gctgggagcg gagaaggacc ctggccgctc ggcctcgggc
      601 gccgcctccg cgtctgcggc gctcaagcag ctgggggact ccccggccga ggacaagtcc
      661 agcttcaagc cctactccaa gggctcggga ggcggcgact ctcgcaaaga cagcggctcc
      721 tcctccgtgt cctccacctc ctcctcctcc tccttgtccc cgggagacaa ggcgggcttc
      781 agggtcccta gcgccgcctg cacgcccttt cccccgcatg gagcgccggt ctcggcgtcg
      841 tcgtcctcgt cctcccccgg cggctcccgg ggcggctccc cgcaccactc tgactgcaag
      901 accggcggcg ggggcgccgg cggggagctg gacaagaaag accaggagcc aagcccagcc
      961 cggagcccgc ggccgtgagc cgagggcagc ggtggggagc cgggtgcgca tggcggcgcc
     1021 gaggccggcg cctccgggcg caagtcggag ccgccctccg cgctggtggg ggccggccac
     1081 gtggcgccgg tgtcgcccta caagccgggc cactcggtgt tcccgctgcc gccctccagc
     1141 atcggctacc acggctccat cgtgggcgcc tacgccggct acccgtctca gttcgtgcct
     1201 ggcctggatc cgagcaagtc tggcctcgtg ggaggccagc tgtcgggggg cctgggcctg
     1261 cccccgggca agccccccna gctccagccc gctcaccggg gcctccccgc cgtccttcct
     1321 gcagggatta tgccgncgac ccctactgcc tgggaggtta ccacggcgcc tcgcacctcg
     1381 gcggctccag ctgctccacc tgcagcgcgc acgacccagn ctgcgcctgg cctgaaggcg
     1441 gggggctacc cgctggtgta ccccgggcac ccgctgcagc ccaccgcgct ctcgtccagc
     1501 gccgcccagg ccgcgctccc cggccacccg ctgtacacct acggcttcat gctgcagaac
     1561 gaaccgctgc cgcacagctg caactgggtg gcggccagcg ggccgtgcga caagcgcttc
     1621 gccacctcgg aggagctgct cagccaccta cggactcaca cggccctgcc cggcgccgag
     1681 aaacttctgg ccgcctatcc gggggcctcg ggcctgggca gtgccgccgc ggccgctgcg
     1741 gccgccgcct cctgccatct gcacctcccc ccgccgactg cccctggcag ccccgggtcg
     1801 ctgtccttgc ggagtccaca cactttggga ctaagccggt accaccctta cggcaagagc
     1861 cacttatcca cagccggggg cctggccgtg ccgtccctcc ccacagccgg accctactac
     1921 tcaccatacg cgctgtacgg acagagactg gcctcagcct ccgcgctcgg ataccagtaa
     1981 ctacagccct gcttccctcc ccaacctcct ctcctccccg ccgccgcctc ccttccccac
     2041 ccgcctccgc tgcctcctcc accactgctt gtccctgccg gacccccgcc cagacccccc
     2101 ccccccaccg gactgtgtat ttatttactg taatgttagc ttacaagctg ggaatataag
     2161 tgcattaacg gcccacatga gtcaatggta tgcaaagagt ctgttccccc ccaaataata
     2221 ttaatcacac aggtaactac atgtccccag tccctcttcc tttctcttcc atttttttct
     2281 tttacttaga tgtaagtttc cgattttttt ttcccttttg cgcctttttt ttttttttga
     2341 ttggtttggt tttatgggga ggagggggag ttgggggttc tttttgtttt cccttcctgg
     2401 ggagtttctt gcatgcttct taactgttca aactacactt cctccttctc ttctcccctc
     2461 ctttcccctt cattccttct tgtttccatc catttgaggt tctgtttttt tcctttgtac
     2521 gagtaacaga gaggaggtat tttttgtaag gcatttgggg gtgcagggag cggccttggg
     2581 agctagaggt cttgccctct tatggacctg gaactttgct ctgtgacccc tgacctgcca
     2641 ctctctctcc ctaggctcct tggtctgtgc cctggccccc caaattagag ccttgctccc
     2701 cgatcttgct ctgagcacag gtcagtggcc ggagaggcgc ctccaacaga gcctttctcc
     2761 tcccagactc ttccaggccc cagaccccgg gtggtcacac tgcctgatgg tgaggggccc
     2821 cgcagggctc acttcactga agtaaaagtt ctagaaggcc ctgctggcat ggaactttgc
     2881 tctttatagt ttgcaaagtg cttttatagt cattgttttt ctctggctat tgtggctgtg
     2941 gtccctgtcc tggcgatggg tgctgggtgg gtgattcttg ctagatcctt ccaaagcaga
     3001 ccagtggtag tatcagctga cagcacagcc tttttagcac cattggggga gttagggagc
     3061 acacggatca cagcaacccc ggtggccccc tcccaggcct gaccctagag tccccaaagt
     3121 tggctgtggg ctccctcagt tactgggatt gaaggctcgg ccccggggtc ttcacccaac
     3181 accctccctc cctccctccc ggccttatgc agctgcgcaa gggctgcggg gcctgtttgg
     3241 gatgaataga gctctccctt ggtaagactt attttgttaa taaatggagt acttggctat
     3301 a
//
LOCUS       XM_032618668            1791 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity phosphatase 26 (DUSP26),
            transcript variant X1, mRNA.
ACCESSION   XM_032618668
VERSION     XM_032618668.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1791
                     /gene="DUSP26"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746904"
     CDS             324..1148
                     /gene="DUSP26"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 26 isoform
                     X1"
                     /protein_id="XP_032474559.1"
                     /db_xref="GeneID:116746904"
                     /translation="MCPGNWLWASVTFMARFSRSGSRSPVRTRGALEEIPAVQHPFLN
                     VFELERLLYTGKTACNHADEVWPGLYLGDHLLSSRQNLPSTPHLCSRMRLWLIAYLGS
                     SGSEVEPWRQRHWPGRGRGPTAQLRAPLTSTPQCREIANNLRELRRLGISHVLNASHS
                     RWRGTPEAYVGLGIRYLGVEAHDSPAFDMSVHFQAAADFIHRALSQPGGRILVHCAVG
                     VSRSATLVLAYLMLYHSLTLVEAIKKVKDHRGIIPNRGFLRQLLALDRRLRKRLEA"
     misc_feature    507..1127
                     /gene="DUSP26"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; Region:
                     PTP_DSP_cys; cl28904"
                     /db_xref="CDD:475123"
ORIGIN      
        1 gtgcgggctg cgtggcccac gccgcgtgtc cactcgggcc acggggtgtg aggctgtgtc
       61 cctgcgtgtc gctgacacac acgcacactg ataccagccc tgcttcgacg tgcgtgtcat
      121 ggcttaaaaa tagatgctaa tccatcaacc ggtctggcgc tggcagccga ggcggcggtg
      181 gcggcagagt catggccgtg gggctgtctg agccggcgat ctgcctccgg gactgagacc
      241 cgcgccgcct cccgagcagc tacctggaga ctgacgcctc atcagccacc cccgtggctg
      301 ccacggttcc tgccgcctct aagatgtgcc ccggcaactg gctctgggcc tcggtgacat
      361 ttatggcccg cttctcccgg agtggctcga ggtctcctgt tcgcacgaga ggggccctgg
      421 aagagatacc agctgtccag catcccttcc tcaacgtctt tgagttggag aggcttctct
      481 acacgggcaa gacggcctgt aaccatgccg acgaggtctg gccaggcctc tacctcggag
      541 accatctcct ctcctccagg caaaatctcc ccagtactcc ccacctttgc tccaggatga
      601 gactctggct cattgcctat ctcgggtcct caggaagtga ggtggagccc tggagacaac
      661 gacattggcc gggcagaggt cggggcccca ccgcccagct ccgcgccccc ctaacctcca
      721 ctcctcaatg cagggaaata gccaacaacc tccgggagct ccgtcgtctg ggcatcagcc
      781 acgtcctcaa cgcctctcac agcaggtggc gagggacacc cgaggcctac gtggggctgg
      841 gcatccgcta cctgggtgtc gaggcccacg actcgccagc cttcgatatg agcgtccact
      901 tccaggcagc cgccgacttc atccaccggg cactgagcca gccaggaggg aggatcctgg
      961 tgcactgtgc tgtgggcgtg agccgctcgg ccactctggt gctggcctac ctcatgctgt
     1021 accacagcct taccctcgtg gaggccatca aaaaagtcaa ggaccaccga ggcatcatcc
     1081 ccaacagggg cttcttgagg cagctcctgg ccctggaccg caggctgcgg aagcgactgg
     1141 aggcgtgagg gggcagaggg agggagggag gtcaggccag gcctgtgggt ccctggatcc
     1201 cagctggaga gtggaggccc aggggacagg ttggaggcgg ccccgcgaac ccgttctctc
     1261 ctgagagggc tgggacgtgg ccccaggcca cagctgctgt ctatcgaggg gggatggggt
     1321 gaggctgggc agcgtgacag tcacctagga gggagctggc cagggaagga ggcaggtagg
     1381 ctgcaggtag aagacagtcc tggatcccag ccaggggggt cccggcgatt catagcccct
     1441 ctttgtgctc aagtgctccc cttgtcctcg tatcagaaca aaaggaccat ctctgccccg
     1501 tacctctgcc aggaatcagg gatgcgacga acacaaacgt gatggtgtcg agttgtgtgg
     1561 aggtggtagc tcagggacag acggtgaaga gagggtgtga aaagctaagg gagaaaccca
     1621 cagacttgtt actccaaacc cgggaagaag aggcgtggga ggcttggcgc ggcacccatg
     1681 ggtgctggtc gtggcccaga actgcagagg tgcatgactg ggagcctaca gataatccct
     1741 cgcttactgg atccaagtgt ctccaggaaa aataaaaatg gtgaatacga a
//
LOCUS       XM_032618670            1794 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity phosphatase 26 (DUSP26),
            transcript variant X2, mRNA.
ACCESSION   XM_032618670
VERSION     XM_032618670.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1794
                     /gene="DUSP26"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746904"
     CDS             327..1151
                     /gene="DUSP26"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 26 isoform
                     X1"
                     /protein_id="XP_032474561.1"
                     /db_xref="GeneID:116746904"
                     /translation="MCPGNWLWASVTFMARFSRSGSRSPVRTRGALEEIPAVQHPFLN
                     VFELERLLYTGKTACNHADEVWPGLYLGDHLLSSRQNLPSTPHLCSRMRLWLIAYLGS
                     SGSEVEPWRQRHWPGRGRGPTAQLRAPLTSTPQCREIANNLRELRRLGISHVLNASHS
                     RWRGTPEAYVGLGIRYLGVEAHDSPAFDMSVHFQAAADFIHRALSQPGGRILVHCAVG
                     VSRSATLVLAYLMLYHSLTLVEAIKKVKDHRGIIPNRGFLRQLLALDRRLRKRLEA"
     misc_feature    510..1130
                     /gene="DUSP26"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; Region:
                     PTP_DSP_cys; cl28904"
                     /db_xref="CDD:475123"
ORIGIN      
        1 gtgcgggctg cgtggcccac gccgcgtgtc cactcgggcc acggggtgtg aggctgtgtc
       61 cctgcgtgtc gctgacacac acgcacactg ataccagccc tgcttcgacg tgcgtgtcat
      121 ggcttaaaaa tagatgctaa tccatcaacc ggtctggcgc tggcagccga ggcggcggtg
      181 gcggcagagt catggccgtg gggctgtctg agccggcgat ctgcctccgg gactgagacc
      241 cgcgccgcct cccgagcagc agctacctgg agactgacgc ctcatcagcc acccccgtgg
      301 ctgccacggt tcctgccgcc tctaagatgt gccccggcaa ctggctctgg gcctcggtga
      361 catttatggc ccgcttctcc cggagtggct cgaggtctcc tgttcgcacg agaggggccc
      421 tggaagagat accagctgtc cagcatccct tcctcaacgt ctttgagttg gagaggcttc
      481 tctacacggg caagacggcc tgtaaccatg ccgacgaggt ctggccaggc ctctacctcg
      541 gagaccatct cctctcctcc aggcaaaatc tccccagtac tccccacctt tgctccagga
      601 tgagactctg gctcattgcc tatctcgggt cctcaggaag tgaggtggag ccctggagac
      661 aacgacattg gccgggcaga ggtcggggcc ccaccgccca gctccgcgcc cccctaacct
      721 ccactcctca atgcagggaa atagccaaca acctccggga gctccgtcgt ctgggcatca
      781 gccacgtcct caacgcctct cacagcaggt ggcgagggac acccgaggcc tacgtggggc
      841 tgggcatccg ctacctgggt gtcgaggccc acgactcgcc agccttcgat atgagcgtcc
      901 acttccaggc agccgccgac ttcatccacc gggcactgag ccagccagga gggaggatcc
      961 tggtgcactg tgctgtgggc gtgagccgct cggccactct ggtgctggcc tacctcatgc
     1021 tgtaccacag ccttaccctc gtggaggcca tcaaaaaagt caaggaccac cgaggcatca
     1081 tccccaacag gggcttcttg aggcagctcc tggccctgga ccgcaggctg cggaagcgac
     1141 tggaggcgtg agggggcaga gggagggagg gaggtcaggc caggcctgtg ggtccctgga
     1201 tcccagctgg agagtggagg cccaggggac aggttggagg cggccccgcg aacccgttct
     1261 ctcctgagag ggctgggacg tggccccagg ccacagctgc tgtctatcga ggggggatgg
     1321 ggtgaggctg ggcagcgtga cagtcaccta ggagggagct ggccagggaa ggaggcaggt
     1381 aggctgcagg tagaagacag tcctggatcc cagccagggg ggtcccggcg attcatagcc
     1441 cctctttgtg ctcaagtgct ccccttgtcc tcgtatcaga acaaaaggac catctctgcc
     1501 ccgtacctct gccaggaatc agggatgcga cgaacacaaa cgtgatggtg tcgagttgtg
     1561 tggaggtggt agctcaggga cagacggtga agagagggtg tgaaaagcta agggagaaac
     1621 ccacagactt gttactccaa acccgggaag aagaggcgtg ggaggcttgg cgcggcaccc
     1681 atgggtgctg gtcgtggccc agaactgcag aggtgcatga ctgggagcct acagataatc
     1741 cctcgcttac tggatccaag tgtctccagg aaaaataaaa atggtgaata cgaa
//
LOCUS       XM_032618671            1662 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity phosphatase 26 (DUSP26),
            transcript variant X3, mRNA.
ACCESSION   XM_032618671
VERSION     XM_032618671.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1662
                     /gene="DUSP26"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746904"
     CDS             324..1019
                     /gene="DUSP26"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 26 isoform
                     X2"
                     /protein_id="XP_032474562.1"
                     /db_xref="GeneID:116746904"
                     /translation="MCPGNWLWASVTFMARFSRSGSRSPVRTRGALEEIPAVQHPFLN
                     VFELERLLYTGKTACNHADEVWPGLYLGDQLQRRHRKLREVGTGPRSHGSEIANNLRE
                     LRRLGISHVLNASHSRWRGTPEAYVGLGIRYLGVEAHDSPAFDMSVHFQAAADFIHRA
                     LSQPGGRILVHCAVGVSRSATLVLAYLMLYHSLTLVEAIKKVKDHRGIIPNRGFLRQL
                     LALDRRLRKRLEA"
     misc_feature    507..998
                     /gene="DUSP26"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; Region:
                     PTP_DSP_cys; cl28904"
                     /db_xref="CDD:475123"
ORIGIN      
        1 gtgcgggctg cgtggcccac gccgcgtgtc cactcgggcc acggggtgtg aggctgtgtc
       61 cctgcgtgtc gctgacacac acgcacactg ataccagccc tgcttcgacg tgcgtgtcat
      121 ggcttaaaaa tagatgctaa tccatcaacc ggtctggcgc tggcagccga ggcggcggtg
      181 gcggcagagt catggccgtg gggctgtctg agccggcgat ctgcctccgg gactgagacc
      241 cgcgccgcct cccgagcagc tacctggaga ctgacgcctc atcagccacc cccgtggctg
      301 ccacggttcc tgccgcctct aagatgtgcc ccggcaactg gctctgggcc tcggtgacat
      361 ttatggcccg cttctcccgg agtggctcga ggtctcctgt tcgcacgaga ggggccctgg
      421 aagagatacc agctgtccag catcccttcc tcaacgtctt tgagttggag aggcttctct
      481 acacgggcaa gacggcctgt aaccatgccg acgaggtctg gccaggcctc tacctcggag
      541 accagttaca gaggaggcat cggaagctca gagaagttgg gactggccca aggtcacacg
      601 ggtcggaaat agccaacaac ctccgggagc tccgtcgtct gggcatcagc cacgtcctca
      661 acgcctctca cagcaggtgg cgagggacac ccgaggccta cgtggggctg ggcatccgct
      721 acctgggtgt cgaggcccac gactcgccag ccttcgatat gagcgtccac ttccaggcag
      781 ccgccgactt catccaccgg gcactgagcc agccaggagg gaggatcctg gtgcactgtg
      841 ctgtgggcgt gagccgctcg gccactctgg tgctggccta cctcatgctg taccacagcc
      901 ttaccctcgt ggaggccatc aaaaaagtca aggaccaccg aggcatcatc cccaacaggg
      961 gcttcttgag gcagctcctg gccctggacc gcaggctgcg gaagcgactg gaggcgtgag
     1021 ggggcagagg gagggaggga ggtcaggcca ggcctgtggg tccctggatc ccagctggag
     1081 agtggaggcc caggggacag gttggaggcg gccccgcgaa cccgttctct cctgagaggg
     1141 ctgggacgtg gccccaggcc acagctgctg tctatcgagg ggggatgggg tgaggctggg
     1201 cagcgtgaca gtcacctagg agggagctgg ccagggaagg aggcaggtag gctgcaggta
     1261 gaagacagtc ctggatccca gccagggggg tcccggcgat tcatagcccc tctttgtgct
     1321 caagtgctcc ccttgtcctc gtatcagaac aaaaggacca tctctgcccc gtacctctgc
     1381 caggaatcag ggatgcgacg aacacaaacg tgatggtgtc gagttgtgtg gaggtggtag
     1441 ctcagggaca gacggtgaag agagggtgtg aaaagctaag ggagaaaccc acagacttgt
     1501 tactccaaac ccgggaagaa gaggcgtggg aggcttggcg cggcacccat gggtgctggt
     1561 cgtggcccag aactgcagag gtgcatgact gggagcctac agataatccc tcgcttactg
     1621 gatccaagtg tctccaggaa aaataaaaat ggtgaatacg aa
//
LOCUS       XM_032618672            1640 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dual specificity phosphatase 26 (DUSP26),
            transcript variant X4, mRNA.
ACCESSION   XM_032618672
VERSION     XM_032618672.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1640
                     /gene="DUSP26"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 9 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746904"
     CDS             362..997
                     /gene="DUSP26"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 26 isoform
                     X3"
                     /protein_id="XP_032474563.1"
                     /db_xref="GeneID:116746904"
                     /translation="MCPGNWLWASVTFMARFSRSGSRSPVRTRGALEEIPAVQHPFLN
                     VFELERLLYTGKTACNHADEVWPGLYLGDQEIANNLRELRRLGISHVLNASHSRWRGT
                     PEAYVGLGIRYLGVEAHDSPAFDMSVHFQAAADFIHRALSQPGGRILVHCAVGVSRSA
                     TLVLAYLMLYHSLTLVEAIKKVKDHRGIIPNRGFLRQLLALDRRLRKRLEA"
     misc_feature    545..976
                     /gene="DUSP26"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; Region:
                     PTP_DSP_cys; cl28904"
                     /db_xref="CDD:475123"
ORIGIN      
        1 atacacacta gcatgtctgc gaggcggggc cgcagggggt gcgggctgcg tggcccacgc
       61 cgcgtgtcca ctcgggccac ggggtgtgag gctgtgtccc tgcgtgtcgc tgacacacac
      121 gcacactgat accagccctg cttcgacgtg cgtgtcatgg cttaaaaata gatgctaatc
      181 catcaaccgg tctggcgctg gcagccgagg cggcggtggc ggcagagtca tggccgtggg
      241 gctgtctgag ccggcgatct gcctccggga ctgagacccg cgccgcctcc cgagcagcta
      301 cctggagact gacgcctcat cagccacccc cgtggctgcc acggttcctg ccgcctctaa
      361 gatgtgcccc ggcaactggc tctgggcctc ggtgacattt atggcccgct tctcccggag
      421 tggctcgagg tctcctgttc gcacgagagg ggccctggaa gagataccag ctgtccagca
      481 tcccttcctc aacgtctttg agttggagag gcttctctac acgggcaaga cggcctgtaa
      541 ccatgccgac gaggtctggc caggcctcta cctcggagac caggaaatag ccaacaacct
      601 ccgggagctc cgtcgtctgg gcatcagcca cgtcctcaac gcctctcaca gcaggtggcg
      661 agggacaccc gaggcctacg tggggctggg catccgctac ctgggtgtcg aggcccacga
      721 ctcgccagcc ttcgatatga gcgtccactt ccaggcagcc gccgacttca tccaccgggc
      781 actgagccag ccaggaggga ggatcctggt gcactgtgct gtgggcgtga gccgctcggc
      841 cactctggtg ctggcctacc tcatgctgta ccacagcctt accctcgtgg aggccatcaa
      901 aaaagtcaag gaccaccgag gcatcatccc caacaggggc ttcttgaggc agctcctggc
      961 cctggaccgc aggctgcgga agcgactgga ggcgtgaggg ggcagaggga gggagggagg
     1021 tcaggccagg cctgtgggtc cctggatccc agctggagag tggaggccca ggggacaggt
     1081 tggaggcggc cccgcgaacc cgttctctcc tgagagggct gggacgtggc cccaggccac
     1141 agctgctgtc tatcgagggg ggatggggtg aggctgggca gcgtgacagt cacctaggag
     1201 ggagctggcc agggaaggag gcaggtaggc tgcaggtaga agacagtcct ggatcccagc
     1261 caggggggtc ccggcgattc atagcccctc tttgtgctca agtgctcccc ttgtcctcgt
     1321 atcagaacaa aaggaccatc tctgccccgt acctctgcca ggaatcaggg atgcgacgaa
     1381 cacaaacgtg atggtgtcga gttgtgtgga ggtggtagct cagggacaga cggtgaagag
     1441 agggtgtgaa aagctaaggg agaaacccac agacttgtta ctccaaaccc gggaagaaga
     1501 ggcgtgggag gcttggcgcg gcacccatgg gtgctggtcg tggcccagaa ctgcagaggt
     1561 gcatgactgg gagcctacag ataatccctc gcttactgga tccaagtgtc tccaggaaaa
     1621 ataaaaatgg tgaatacgaa
//
LOCUS       XR_004347911             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116746906),
            ncRNA.
ACCESSION   XR_004347911
VERSION     XR_004347911.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116746906"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746906"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116746906"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746906"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcttgctt cggcagcaca tatactaaaa ttggaatgat acagagaaga ttagcgtggt
       61 ccctgcacaa ggatgacaca caaattcgtg aagcgttcca tattttt
//
LOCUS       XR_004347912             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116746907),
            ncRNA.
ACCESSION   XR_004347912
VERSION     XR_004347912.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116746907"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746907"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116746907"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746907"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgcctgctt gggcagcaca tatactaaaa ttggaacaat acagagaaga taagcatggc
       61 ccctgcgcaa ggatgacacg caaattcatg aagcgttcca tatttta
//
LOCUS       XR_004347913             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116746908),
            ncRNA.
ACCESSION   XR_004347913
VERSION     XR_004347913.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116746908"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746908"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116746908"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746908"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gggctcaatt tggcagcata tatactaaaa ttggaacgat acatagaaga ttagcatggc
       61 ccctgcacga ggatgacaca caaattcgtg aagcattccc tattttt
//
LOCUS       XR_004347914             108 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116746909),
            ncRNA.
ACCESSION   XR_004347914
VERSION     XR_004347914.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..108
                     /gene="LOC116746909"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746909"
     ncRNA           1..108
                     /ncRNA_class="snRNA"
                     /gene="LOC116746909"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746909"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcactt cagcagcacg tatactaaaa ttggaatggt acagagaaga ttagcatggc
       61 ccctgcgcaa ggatgggcac gcaaattcgt gaagcgttcc atatttaa
//
LOCUS       XR_004347915             103 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116746910),
            ncRNA.
ACCESSION   XR_004347915
VERSION     XR_004347915.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..103
                     /gene="LOC116746910"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746910"
     ncRNA           1..103
                     /ncRNA_class="snRNA"
                     /gene="LOC116746910"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746910"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 ttgctgtggc agcatgtatc ctaaaattct aacaattcag agaaaataag catagcccct
       61 gtgcaaagat gacacacaac tccatgaact tttccatatt ttt
//
LOCUS       XR_004347916             121 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD22
            (LOC116746912), ncRNA.
ACCESSION   XR_004347916
VERSION     XR_004347916.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..121
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..121
                     /gene="LOC116746912"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746912"
     ncRNA           1..121
                     /ncRNA_class="snoRNA"
                     /gene="LOC116746912"
                     /product="small nucleolar RNA SNORD22"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00099"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746912"
                     /db_xref="RFAM:RF00099"
ORIGIN      
        1 acccagtgaa gaaacagtca cacatcttac ctcccatcct agtcccagag cctgggtgaa
       61 cccactgggg ctagctggag gatgggaggc aagtttgttt cagaggaact gtctgagaca
      121 g
//
LOCUS       XR_004347917             139 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA70
            (LOC116746913), ncRNA.
ACCESSION   XR_004347917
VERSION     XR_004347917.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..139
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..139
                     /gene="LOC116746913"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746913"
     ncRNA           1..139
                     /ncRNA_class="snoRNA"
                     /gene="LOC116746913"
                     /product="small nucleolar RNA SNORA70"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00156"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746913"
                     /db_xref="RFAM:RF00156"
ORIGIN      
        1 ttgcagccaa ttaagccgac tgtgctcttt tccccacggg ggcctggtgt gcagtggctg
       61 caaacaacag gctccttggt agtgtagtgt atgagcctgt tgccagtatg ggttgcccta
      121 agggatgttg gattcagcc
//
LOCUS       XR_004347918              78 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORD55/SNORD39
            (LOC116746915), ncRNA.
ACCESSION   XR_004347918
VERSION     XR_004347918.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..78
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..78
                     /gene="LOC116746915"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746915"
     ncRNA           1..78
                     /ncRNA_class="snoRNA"
                     /gene="LOC116746915"
                     /product="small nucleolar RNA SNORD55/SNORD39"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00157"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746915"
                     /db_xref="RFAM:RF00157"
ORIGIN      
        1 ttcgttatgt gaccaaagtt ttggtcacag atcaagaatg agacatgggg gagccaacct
       61 tggagagctg agcgtaaa
//
LOCUS       XR_004347919             135 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA1
            (LOC116746917), ncRNA.
ACCESSION   XR_004347919
VERSION     XR_004347919.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..135
                     /gene="LOC116746917"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746917"
     ncRNA           1..135
                     /ncRNA_class="snoRNA"
                     /gene="LOC116746917"
                     /product="small nucleolar RNA SNORA1"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00408"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746917"
                     /db_xref="RFAM:RF00408"
ORIGIN      
        1 agcttcattc tagatgcaaa tgggaactgt tgtgcatggt gtccaggtat tactgatgtg
       61 gccacactga gacataggat tcgtttccat cacagtaagt ttactgcagt ggtgacaagg
      121 agatctgtaa catgt
//
LOCUS       XR_004347920             129 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA SNORA18
            (LOC116746918), ncRNA.
ACCESSION   XR_004347920
VERSION     XR_004347920.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..129
                     /gene="LOC116746918"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746918"
     ncRNA           1..129
                     /ncRNA_class="snoRNA"
                     /gene="LOC116746918"
                     /product="small nucleolar RNA SNORA18"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00425"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746918"
                     /db_xref="RFAM:RF00425"
ORIGIN      
        1 gtcgaggtct atcctgatgg ggctttttct gtaaacctac attgttggaa atgcctcaga
       61 gtaactgcgt actttccttt actcatggaa ctacctgtta gatctgtggg aaagaagtac
      121 aagacagag
//
LOCUS       XR_004347921             120 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6atac minor spliceosomal RNA
            (LOC116746920), ncRNA.
ACCESSION   XR_004347921
VERSION     XR_004347921.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..120
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..120
                     /gene="LOC116746920"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746920"
     ncRNA           1..120
                     /ncRNA_class="snRNA"
                     /gene="LOC116746920"
                     /product="U6atac minor spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00619"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746920"
                     /db_xref="RFAM:RF00619"
ORIGIN      
        1 gtgttgtatg aaaggagaaa gcactcccct tgacaaggat ggaagaggcc ctcaggcctg
       61 acaacaggca cacagttaag gcactgagaa ctactttgtg gcatccaacc atcattttaa
//
LOCUS       XR_004347922             120 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6atac minor spliceosomal RNA
            (LOC116746921), ncRNA.
ACCESSION   XR_004347922
VERSION     XR_004347922.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..120
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..120
                     /gene="LOC116746921"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746921"
     ncRNA           1..120
                     /ncRNA_class="snRNA"
                     /gene="LOC116746921"
                     /product="U6atac minor spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00619"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746921"
                     /db_xref="RFAM:RF00619"
ORIGIN      
        1 gtgttgtatg aaaggagaaa gcactcccct tgacaaggat ggaagaggcc ctcaggcctg
       61 acaacaggca cacagttaag gcactgagaa ctactttgtg gcatccaacc atcattttaa
//
LOCUS       XR_004347923             104 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nucleolar RNA U13 (LOC116746922),
            ncRNA.
ACCESSION   XR_004347923
VERSION     XR_004347923.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..104
                     /gene="LOC116746922"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746922"
     ncRNA           1..104
                     /ncRNA_class="snoRNA"
                     /gene="LOC116746922"
                     /product="small nucleolar RNA U13"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01210"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746922"
                     /db_xref="RFAM:RF01210"
ORIGIN      
        1 atccttttgt agttcataag tgtgatgatt gggtgttcac gcgcttgtgt gatatgtgcc
       61 tccttccaac cttgttacga ctgtggcaca ttacccgtct gaca
//
LOCUS       XR_004347924             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116746923),
            ncRNA.
ACCESSION   XR_004347924
VERSION     XR_004347924.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116746923"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746923"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116746923"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746923"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc
       61 ccctgcgcaa ggatgacacg caaattcgtg aagcattcca tattttt
//
LOCUS       XR_004347925             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116746924),
            ncRNA.
ACCESSION   XR_004347925
VERSION     XR_004347925.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116746924"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746924"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116746924"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746924"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cagcagcaca tatactaaaa ctggaacgat acagagaaga ttagcatggc
       61 ccctgcacaa ggatgacacg caaattcgtg aagcgttcca tattttt
//
LOCUS       XR_004347926             107 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus U6 spliceosomal RNA (LOC116746925),
            ncRNA.
ACCESSION   XR_004347926
VERSION     XR_004347926.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045783.1) annotated using gene prediction method: cmsearch.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..107
                     /gene="LOC116746925"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="GeneID:116746925"
     ncRNA           1..107
                     /ncRNA_class="snRNA"
                     /gene="LOC116746925"
                     /product="U6 spliceosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00026"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /db_xref="GeneID:116746925"
                     /db_xref="RFAM:RF00026"
ORIGIN      
        1 gtgctcgctt cggcagcaca tatactaaaa ttggaacaat acagagaaga ttagcatggc
       61 ccctgcgcaa ggatggcaca caaattcgtg aatcattcca tattttt
//
LOCUS       XM_032617409            2537 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus D-glutamate cyclase (DGLUCY), mRNA.
ACCESSION   XM_032617409
VERSION     XM_032617409.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-103               VOSU01000015.1     165443633-165443735
            104-257             VOSU01000015.1     165448188-165448341
            258-300             VOSU01000015.1     165450448-165450490
            301-301             "N"                1-1
            302-456             VOSU01000015.1     165450491-165450645
            457-579             VOSU01000015.1     165453337-165453459
            580-607             VOSU01000015.1     165453462-165453489
            608-730             VOSU01000015.1     165454622-165454744
            731-934             VOSU01000015.1     165457111-165457314
            935-1086            VOSU01000015.1     165460884-165461035
            1087-1087           "N"                1-1
            1088-1186           VOSU01000015.1     165461036-165461134
            1187-1286           VOSU01000015.1     165465479-165465578
            1287-1435           VOSU01000015.1     165469203-165469351
            1436-1558           VOSU01000015.1     165472359-165472481
            1559-1710           VOSU01000015.1     165486641-165486792
            1711-1758           VOSU01000015.1     165493660-165493707
            1759-2537           VOSU01000015.1     165493709-165494487
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2537
                     /gene="DGLUCY"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 3 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     Proteins, and 62% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746127"
     CDS             1..1860
                     /gene="DGLUCY"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 3 bases in 2 codons; substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:283..285,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: D-glutamate cyclase,
                     mitochondrial"
                     /protein_id="XP_032473300.1"
                     /db_xref="GeneID:116746127"
                     /translation="MTFPLPLKSRLPSAVRSLILQKKPNLRNMSSMARGLQPASVVAL
                     PRSLAPAFEKFCQINSGPLPLLGESEPGKWMLPALGAVPGTKTGCPQFWKXEFGTCXG
                     SLTSLEESSGQLKDMMAFLLGSSFSLEGAWEKGGLPRRDSAGHGHMGAYKTEVPCATI
                     AGFCCPLVVTVRPVPKDKLEQLVQACCSVGGEHGQPVHTGDPELLGIKDLSKPDHGEP
                     VVCQLGHVPVFWPSQLTSLEGVRACKMPLAFTSAPGCTVMTDLKGTVAPARCLTLEGM
                     PEVHHISQDPLHCSMASASVAQKVRELEMIIAIDPGSRGLGHLLHPGKLLRAFLPPSH
                     VRSMLRTTGFPAHLNHEPPEETDGPPGAXGFPQAWEKGVSMVVDQRALNLHKKLVDEA
                     VQRGVLKRQIPILTYQGGSAEAAQAFLCRDGNPKSPRFDHLVAIERTGGAADGNYYNA
                     GKRNAKHLVDAIDGLFPAVQKTPGISSAGVGDGGNELGMGKVMEAVKRHIRNGDVIAC
                     DVETDFAVIIAGVSNWGGYALACALYILSSCEVHRRYLRKAVGPFRAPGGQNWTQALP
                     SITKEEKMLGILVQHGVWSGVSGTLGMEVDGLPFHGTLAQMIQKLVDITMAQG"
     misc_feature    355..780
                     /gene="DGLUCY"
                     /note="D-glutamate cyclase; Region: D-Glu_cyclase;
                     pfam07286"
                     /db_xref="CDD:462133"
     misc_feature    907..1836
                     /gene="DGLUCY"
                     /note="Domain of unknown function (DUF4392); Region:
                     DUF4392; pfam14336"
                     /db_xref="CDD:464140"
ORIGIN      
        1 atgaccttcc cactccccct gaagtcccgc cttccctctg ctgtgaggag tttgattcta
       61 cagaagaaac caaacctcag aaacatgtcc agcatggcta gggggctcca gccagccagt
      121 gtggtggccc tgcccaggtc ccttgctccg gcctttgaaa agttctgcca gatcaacagt
      181 ggccctctgc cgctgctggg cgaaagtgag ccaggcaagt ggatgttgcc tgccctgggt
      241 gctgtcccag gtaccaagac gggctgtccc cagttctgga agtaggagtt cggcacctgc
      301 nacggcagcc tgacctcgct ggaggagtcc tcggggcagc tgaaggacat gatggccttc
      361 ctcctgggca gcagcttctc cctggaaggg gcctgggaga agggaggact ccccagaagg
      421 gactcagcag gccacggcca catgggtgca tataagacag aggtgccttg tgccaccatt
      481 gctggctttt gctgccctct ggtggtcaca gtgaggcccg ttcccaagga caaactggaa
      541 cagctggtgc aggcctgttg ctccgtgggg ggtgagcatg gacaaccggt tcacactggt
      601 gacccagaac tgttgggtat caaagatctt tccaaacctg accacgggga gcctgtggtg
      661 tgtcagctag ggcatgttcc agtgttctgg ccttctcagc tgaccagtct cgaaggtgtc
      721 cgcgcctgca agatgccact ggctttcacc agcgcaccgg gttgcacagt tatgactgac
      781 ctgaagggta cagtggctcc agccagatgt ctcacccttg agggaatgcc agaggtccat
      841 cacatttccc aggatccttt gcactgcagc atggcgtcag cttcagtcgc tcagaaggtc
      901 agagaactgg agatgataat tgccatcgac ccaggcagcc ggggtctcgg gcacctgctc
      961 catccaggca agctgctgcg ggccttcctg cctccgtccc acgtccgctc catgctccgc
     1021 accaccggct tccccgcgca tctcaaccac gagcctccgg aagagacgga cggcccgccg
     1081 ggagccngcg gcttcccgca ggcctgggag aagggggtct ccatggtcgt cgaccagaga
     1141 gccttgaact tgcacaagaa gcttgttgac gaggctgtac agcgaggtgt tctgaagagg
     1201 cagattccaa tattaactta ccaaggcgga tcggcggaag ctgctcaggc atttctatgc
     1261 agagacggga accccaagtc acccaggttt gaccatctgg tggcgatcga gcgcacggga
     1321 ggggctgccg atggcaatta ctacaacgca gggaagagga acgccaagca cttggtggac
     1381 gccatcgatg gtcttttccc tgcagtgcag aagactcctg gaatttcatc agctggggtc
     1441 ggtgatggag gcaacgagct tgggatgggc aaagtcatgg aggccgtgaa gaggcacata
     1501 cgaaatgggg acgtcattgc ctgtgacgtg gagactgact ttgcggtcat catcgctggc
     1561 gtttctaact ggggaggtta tgccttggcc tgtgcgctgt acatcctgag ctcatgtgag
     1621 gtccacagac gttatctgag gaaggcagtt gggcccttca gagcacctgg aggacagaac
     1681 tggactcagg ccctcccatc catcactaag gaggaaaaaa tgttgggcat cctggtgcag
     1741 catggagtct ggagcggagt ctcgggcacc ctaggcatgg aggtggacgg gctgcccttc
     1801 catggcactc tcgcccagat gatccagaag ctggtagaca tcaccatggc gcaagggtga
     1861 ccatgcacat tacaggcatg cgggttgcgt attagacgga tctagggagg agttccctga
     1921 gggccccggc tttcttctac aacagccttg caaataaaca ctggccctgg gtgagcagcg
     1981 tgctccacac tggcctggct cacgcgtgcc cacctcctgg gtcggggttg ggggcggcgg
     2041 gttatgcagg tgatgtggac cgagtaaaac agtcctctgg ggtccccagt tttggctttt
     2101 attcctaagt gccaggaggc attgatttca acctcctcac cctggcttct tcaggccacc
     2161 cacgcagtct gctctgagag tcttctgacc aatcactaac ggggacgcca gtgagcaatg
     2221 aatttccagg cagacacaga gggtccggaa taacccccca ggctaattaa gaaacagcaa
     2281 aatgtacaaa tgtgtagtgt atattacgaa gctctggggc ttcactaaag gtttactcat
     2341 cacccaccac caacaaaaat atttatacct tcgaaatgcc tctctttttc aaaccaacat
     2401 tctgtttatt taggcaaaag atttatctcc atccatcact tcccctgtgc ccctccccct
     2461 cccttactcc cttacatcct gatcccctgc cgcaaagcct gacacctctc ccacctcctt
     2521 cccatctgct caccccc
//
LOCUS       XM_032617435            3378 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus bradykinin receptor B2 (BDKRB2), mRNA.
ACCESSION   XM_032617435
VERSION     XM_032617435.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3378
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3378
                     /gene="BDKRB2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 15 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746141"
     CDS             67..1149
                     /gene="BDKRB2"
                     /codon_start=1
                     /product="B2 bradykinin receptor"
                     /protein_id="XP_032473326.1"
                     /db_xref="GeneID:116746141"
                     /translation="MFNVTLQALEPALNGTPPQSSSCVHNDWWSWLNTIQSPFLWVLF
                     ILAALENAFVLSVFCLHRNSCTVAEVYLGNLAAADLLLACGLPFWAITIANNFDWLFG
                     EVLCRVVNTVLYMNLYSSICFLMLVSIDRYLALVKTMSVGRMRGVRCARLYSLVIWGC
                     SLLLSLPMLVFRTMREYRAEGHNVTACVIIYPSRSWEVFTNSLLNSVGFLLPLSVITF
                     CTVHIIRVLRNNEMRKFKEIQTERKATVLVLAVLLLFMACWLPFQISTFLDTLQRLDI
                     LSSCWDEHVVDVFTQIASYVAYSNSCLNPLVYVIVGKSFRKKSREVYGRLCRQGCRGA
                     EPSQTENSMGTLRTSISVERQIHKLS"
     misc_feature    166..1023
                     /gene="BDKRB2"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    172..246
                     /gene="BDKRB2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    271..336
                     /gene="BDKRB2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    385..453
                     /gene="BDKRB2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    520..570
                     /gene="BDKRB2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    658..729
                     /gene="BDKRB2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    799..867
                     /gene="BDKRB2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    925..1002
                     /gene="BDKRB2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 tcgggcagcc ccgctggacc agggagctac gaagtgcccg cgtttgtgct ccggacaagc
       61 gccaaaatgt tcaatgtcac cttgcaagcc cttgaacctg ccctcaacgg gacccctccc
      121 cagagcagca gctgcgtcca caacgactgg tggagctggc tgaacaccat ccagtccccc
      181 ttcctctggg tcctcttcat actggcagct ctcgagaacg ccttcgtcct cagtgtcttc
      241 tgcctgcaca ggaacagctg cacggtggcg gaggtctacc tgggcaatct ggccgcggcc
      301 gacctgctct tggcctgcgg gctgcccttc tgggccatca ccatcgccaa caacttcgac
      361 tggctcttcg gggaagtcct ctgccgcgtg gtaaacaccg tgctctacat gaatctctac
      421 agcagcatct gcttcctcat gctggtgagc attgaccgct acctggccct ggtgaagacc
      481 atgtccgtgg gccggatgcg cggggtgcgc tgcgccagac tctacagcct ggtgatctgg
      541 ggctgctcgc tcctcctgag cttgcccatg ctggtcttcc ggaccatgcg ggagtacagg
      601 gccgagggcc acaacgtcac cgcctgcgtc atcatctacc cgtcccgcag ctgggaggtc
      661 ttcaccaaca gcctcctgaa ctccgtgggc ttcctgctgc ccctgagcgt catcaccttc
      721 tgcaccgtgc acatcatacg cgtgctgcgc aacaacgaga tgcggaagtt caaggagatc
      781 cagacggaga ggaaagccac cgtgctggtc ctggccgtcc tgctgctgtt catggcctgc
      841 tggctgccct tccagatcag caccttcctg gacacgctgc agcgcctcga catcctctcc
      901 agctgctggg acgagcacgt ggtcgacgtc ttcacgcaga tcgcgtccta cgtggcctat
      961 agcaacagct gcctcaaccc gctggtgtac gtgatcgtgg gcaagagctt ccgcaagaag
     1021 tcgcgggagg tgtacggccg gctgtgccgg caagggtgcc gcggggcaga gcccagccag
     1081 acggagaact ccatgggcac gctgcggacc tccatctcag tggaacgcca gattcacaaa
     1141 ctgtcgtagt gggtgggaag cagccagtga gcggatgtca ccagggctac taacgcgggt
     1201 gacgattact ggacagtgat tctcaggatg tgacccagga ggaatgggag gaatcccaag
     1261 tgtgaccttg gacagtgagc cggtgtctcc agtaaatgcc ttcccggctc cagttgcaga
     1321 taacaaggct gtgcggttgg agggatctgg tacacagcca agggctccag aaacacaaga
     1381 gtattattgt tctttgctgc ctagaccagt ctgctgcttc ccaggagtgg agggagcctg
     1441 ggggtaggta caggagcgac cgagcttccc tcccatgtgg tgtcgcacct tgccccagca
     1501 cgacagctca gatctccaga aatgccaccc agctttggtg cggcagctga gtgcccacgc
     1561 agggctcagc tggagttctg ccttgggttt ctttaatcca ctcagctagg actttggagg
     1621 atgatttctc aggttgatga aggttaaact ctgagagatc catggtgtga atctggagac
     1681 caggattctt tcattcccct catggaaaga caagtggtct gtgccaaaga agaacccaat
     1741 aagcacttat ccagcacttg ctgtatacgc agccttgagc actgtgggta agagaagaaa
     1801 aagaaagtac agtctcggtc ttgaaggaac ttgcagactc atgtggggat aagtcagcag
     1861 ccaaggtcaa gcaaggcact gtgggcgggg cagagcagag gggtgaggag agcccgcccc
     1921 agctcagcct ataactggtt gcacgtggct ctgtccctgt ctcggtttcc tcctctgtaa
     1981 cacgaggctg ttgggggatt aaaggagcta acaggcataa aagtactttg acaaatgaaa
     2041 ggtgctatgt aaatgtgagg cattattacg cccacagaac aggaataaat ttattataag
     2101 gagaaagaca caggttcagc aaaaggtccg tagaggagaa tcggtagcta atggtggggt
     2161 gtaaagcacc catcagtgtc tgacacatac taggtgctca atatgttagc tcccttccac
     2221 cacctgtcct tcccatcaac gtgcacacac acacacacac acacacacac acacacacgc
     2281 acacacaagc gtcttcagtg gaggtgggag aacgccctcc ccaacccgta gatcatttgc
     2341 ccaaagaagc aactgcagag gggtccgcga ctctgcctcc tgtgggcggg gcaggggcgg
     2401 gtcgttgtgc cgaagggcgg ggtgggcagt gatggggcgg aaagccggta ccaggtgtca
     2461 ggcaggatga aactggacca gcatccttgg ccagaggctt aagacatagc cctagcccca
     2521 agcccgaggt cctccaggcg gaattcgttt cttctttttc tacacgtttt ataatctgcc
     2581 ttctgtggcc ggcccacgtg gagataacgg agaacgcacc tcccaggcgc caacatcaag
     2641 ccctcagagt ctaggcaggg aggcacactc agtagcgatg gagttcggga cgcgtaatgc
     2701 aggcagcgcc ctggaaacac tcactcgatc agtaaatgag tgatttgtta gcgggctgtc
     2761 tctggagagc atagaacctg tgggaccagg aggatttaga tggcaaagag cccataaata
     2821 ccgcccaatc cagctctgga ttttaaaaga aaaagagtca cagaagattt cttccccatc
     2881 ccagcctttg ttttctgcta cgcatacccc tctgcccaaa taaacataca cacttctagc
     2941 tggagaaaga aaacagaaga cataagaaat aggaaccatt tcgcattaga acgaagtagg
     3001 aaccatttag tattagaatg aagttaaacc atgtgcatat tgtgagtggg gtaacacaca
     3061 aggaggctgg actttggaat gtgtaccact cattcatcag tgggtgtgta tggtctgaag
     3121 gtctcctatg agcagagccg catcacagcc ctgggcccct aatggtcatt tagggtcgac
     3181 ccgtgggcta aggagcagtc ggtctgtggg aagggagctg ccccatgggc tgtgttggta
     3241 ccatgataaa gaacatctgt cctgtgaaag gtccaaggag ctactacatt gtaaagaggg
     3301 agcatttcac aaacaaggag aaatggatga acggcataaa cgtgtttttt ccagcgtaat
     3361 aaagggatga ggcatttt
//
LOCUS       XM_032617450            2239 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphotriesterase related (PTER), mRNA.
ACCESSION   XM_032617450
VERSION     XM_032617450.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 15% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-182               VOSU01000015.1     5896978-5897159     c
            183-544             VOSU01000015.1     5861489-5861850     c
            545-637             VOSU01000015.1     5861394-5861486     c
            638-878             VOSU01000015.1     5859683-5859923     c
            879-964             VOSU01000015.1     5858698-5858783     c
            965-1050            VOSU01000015.1     5854981-5855066     c
            1051-1191           VOSU01000015.1     5839527-5839667     c
            1192-2239           VOSU01000015.1     5825324-5826371     c
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2239
                     /gene="PTER"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins, and 84% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746143"
     CDS             206..1399
                     /gene="PTER"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:518..520,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: phosphotriesterase-related
                     protein"
                     /protein_id="XP_032473341.1"
                     /db_xref="GeneID:116746143"
                     /translation="MSSLSGKVQTVLGLAGPSKLGRTLTHEHLTMTFACSYYPPPPCR
                     KVISNEPITMKNLFWIQKNPYSHKENLQLNQETEAIKEELLDFKAQGGGALVENTTTG
                     ISXDVQTLKRIAEETGVHITSGTGFYVDGTHSSETRAMSVEQLTDVLVREILHGADGT
                     SIKCGVIGETGCSWPLTEGERRVLQATAHAQAQLGRPVIIHPGRNPTSKQVMSHLQNK
                     LRHTLTGSLSEIQTAETWTCLSEVHHSTLSYCIRPPLNINSPSPPPLAHGNRHSIVCL
                     YECDDRTLLGKRELLEFAQLGCYLEYDLFSSELFHYQFNPEIDMPHDNKRIERVRLLV
                     DEGYEDRILMAHDIHTKHRLTKYGGRGYSHILTNIVPKMFRGITEAALDKILIENPKQ
                     WLTFK"
     misc_feature    254..1390
                     /gene="PTER"
                     /note="Superfamily of metallo-dependent hydrolases (also
                     called amidohydrolase superfamily) is a large group of
                     proteins that show conservation in their 3-dimensional
                     fold (TIM barrel) and in details of their active site. The
                     vast majority of the members have a...; Region:
                     metallo-dependent_hydrolases; cl00281"
                     /db_xref="CDD:469705"
     misc_feature    order(281..283,287..289,707..709,806..808,1004..1006,
                     1244..1246)
                     /gene="PTER"
                     /note="active site"
                     /db_xref="CDD:238295"
     misc_feature    order(287..289,587..589,806..808,1244..1246)
                     /gene="PTER"
                     /note="substrate binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238295"
     misc_feature    order(302..304,506..508,623..625,635..637,656..658,
                     677..679)
                     /gene="PTER"
                     /note="homodimer interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238295"
ORIGIN      
        1 catggagtgt ggccctgggg ccctagggcg cggagaacac tagaccgaaa ggtgaagtgg
       61 gcggagactg gggagacgtc aaaggcccag ttcctgcgga gggtccccgg ggagaaggcg
      121 gcgcgcaacg agtggaggga aggagcccgg gagccagagc gggcgcggga gctgtgggcc
      181 cgagcatctc ctggtcccat cagaaatgtc ttccttaagt gggaaagtgc aaactgttct
      241 gggccttgcg gggccaagca aactgggccg caccctgacc cacgaacact tgacaatgac
      301 ttttgcctgc tcttactacc cacctcctcc gtgccgtaaa gtgatctcca atgaacctat
      361 tacaatgaaa aatttatttt ggatccagaa aaacccttat tcccataaag agaatctgca
      421 gttgaatcag gagacggaag ccatcaagga agaactgttg gattttaaag cccaaggtgg
      481 aggagctttg gtggaaaaca caaccactgg gatcagctga gatgtgcaga ccttgaagcg
      541 gattgcagaa gagactggtg tccacatcac atccggaact gggttttatg tggatggaac
      601 tcactcttca gagaccagag ccatgtcagt ggagcagctt accgatgtcc ttgttcgtga
      661 aattctccat ggagctgatg gaaccagtat caagtgtggc gttattgggg aaactggttg
      721 ctcctggcct ctgactgagg gtgaaagaag ggttctacag gcaacagctc acgctcaggc
      781 tcagcttggc cgtcctgtta ttattcaccc gggaaggaat cccacctcca aacaagttat
      841 gtcacacctc caaaacaagt tacgtcacac cttgacaggg tcactttcag agattcagac
      901 ggctgaaaca tggacatgtc tttctgaggt ccaccactca accctctcat attgtattag
      961 acccccactg aacatcaact ccccatcccc cccacccctg gcccacggca accgccattc
     1021 gattgtctgt ctctacgaat gtgacgacag gactctcctt ggcaagaggg aactactgga
     1081 gtttgctcaa cttggctgtt acttggaata tgatctcttt agttctgaac ttttccatta
     1141 tcagttcaac ccggaaattg acatgcccca tgataataaa agaattgaaa gggtacgtct
     1201 tctggtggat gagggctatg aagatcgaat tctgatggca catgacatac atacgaagca
     1261 tcggctgacg aaatacggag gtcgcggcta ttctcatata cttaccaaca ttgttcctaa
     1321 aatgtttaga ggtataactg aggctgcact tgataagata ctgatagaga accccaagca
     1381 atggctaact ttcaaatagg acggttgttc tgaattcata ccttgagtat aaagcttgca
     1441 gggaacagac agggatttca aacccactgt gagatattaa tcagagctac actggactga
     1501 cagagcgttt cctttttagg agaattagaa gacttctgcc ttctcagaaa ctggctatta
     1561 catctgtacc ttcagggagt tactgagcct aattaagccc tattgttttt ccttaacgaa
     1621 gtaaagacaa aagtacccat atccaaacaa cgatttacag tctacatccc cttaatggag
     1681 ttttgcttcc ttttgttttg ttttcttaat ctatcaccag cactgcatga gaaaatttaa
     1741 agtgtttcta gttaaattac ccctttctgg agcaatctaa tgtttcctgt aatattgatg
     1801 actctactaa ttatcctgct gtcctttaat taatgcttaa tgaataatat ggcacttcaa
     1861 gatagtttct gcagcgaggg aagttaaatt ttgagacttt tttctcaaaa gatactgtaa
     1921 tataattacc aattcacaat ggtaaaaata ttgtggaagg ttaattatat gctgttcacc
     1981 tatctatata tactgataat aaatcagttt tgttgcctgt ggctttctgg tatccagttt
     2041 tcctataaat tttgttgtgt tttgaaaaat ttgtacaagg ggacatgaac acataacata
     2101 gtactcaatt agaaaaattc aatcataaaa gtcaaaatat attacataat atagtttaat
     2161 gaatcattac atttatagta acaaaggcca caatttaatt aataatatag aatgcaaaaa
     2221 aaaaaaaaaa agagaaatg
//
LOCUS       XM_032617461            1290 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus StAR related lipid transfer domain
            containing 5 (STARD5), mRNA.
ACCESSION   XM_032617461
VERSION     XM_032617461.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-220               VOSU01000015.1     34216056-34216275   c
            221-250             VOSU01000015.1     34215331-34215360   c
            251-251             "N"                1-1
            252-270             VOSU01000015.1     34215312-34215330   c
            271-403             VOSU01000015.1     34214826-34214958   c
            404-521             VOSU01000015.1     34211629-34211746   c
            522-615             VOSU01000015.1     34210683-34210776   c
            616-1290            VOSU01000015.1     34205402-34206076   c
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1290
                     /gene="STARD5"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:116746150"
     CDS             122..763
                     /gene="STARD5"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: stAR-related lipid transfer
                     protein 5"
                     /protein_id="XP_032473352.1"
                     /db_xref="GeneID:116746150"
                     /translation="MDPALAAQISEAVAEKMLQYRRDESGWKICREGNGVSVSWRPSX
                     EFPGNLYRGEGIVNGTPEQVWDCVKPLAGTLRDKWDENVNSFEIIESITDTQCVSRTT
                     TPSAVMKLISPRDFVDLVLVKTYEDGTLSSNATSVEHLLCPPKPGYVRGFNHPCGCFC
                     GPLPGEPNKTSLVTFFQTDLSGYLPQGVVDSFFPRSMAGFYANLQKAVKKFYG"
     misc_feature    137..754
                     /gene="STARD5"
                     /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
                     ligand-binding domain superfamily; Region: SRPBCC;
                     cl14643"
                     /db_xref="CDD:472699"
     misc_feature    order(272..274,278..280,284..286,311..319,323..328,
                     377..379,410..412,416..418,422..424,428..430,473..475,
                     479..481,485..487,515..517,521..523,584..589,593..595,
                     599..601,635..637,641..643,647..649,653..655,686..700,
                     704..709,716..724,731..733)
                     /gene="STARD5"
                     /note="hydrophobic ligand binding site [active]"
                     /db_xref="CDD:176912"
ORIGIN      
        1 ctgaggacgg gactccgggc tcctttgctg gcccgggctt tccggcctcc catacctaag
       61 tgcccggccg ccaccgcaca ccgtacctgc tagccagcaa cctcgcgcag ttctcggcgc
      121 aatggacccg gcgttggccg cgcagataag cgaggcggtg gcggagaaga tgctccagta
      181 ccggcgagac gagtcaggat ggaagatttg ccgggaaggc aacggagttt cagtttcctg
      241 gaggccgtct ngtgagtttc cagggaacct gtaccgagga gaaggcattg tgaatgggac
      301 accagagcag gtgtgggact gtgtgaagcc acttgctggg accctacgag ataagtggga
      361 tgagaatgtg aacagttttg aaattatcga aagcatcact gatacacagt gcgtcagcag
      421 aactaccacc ccctcggccg tcatgaagct catctctccc agagactttg tggacctggt
      481 gctggtcaag acgtacgagg atgggaccct cagttccaat gctaccagtg tggagcatct
      541 gttatgtccc ccaaagccag gttatgtgag aggatttaac catccttgtg gttgcttctg
      601 tggacctctg ccaggggagc ccaacaagac cagcctggtc acgttcttcc agaccgacct
      661 cagcggttac cttccgcagg gcgtggtgga ctccttcttt ccccgcagca tggccgggtt
      721 ttatgccaac ctccagaaag cagtgaagaa attctacggc tgacatcctg gctggtgggc
      781 cgagaactgc catgactcgt gcggacctgc cgttgttggg acgcagctgg agagcctggg
      841 agaacacggg ctccattgga accgctctac ctttggaacc caccaatgac cagacatcgg
      901 ccagaggcag ccctggcccc tcctgcgcct ccttccactt gggttgggct gccatttccc
      961 aagcacccct cctccagcag ggtgcccccc aagccccccg gccactggac agggactctg
     1021 cccgggcacc gtgcgttgct cgcgggtcca aagcctttct gtgccgatca ctctcagaga
     1081 ccatgtctcc ccgtttgttg agaagaatca ccatcaatcc cgaaaacctg gcccagcctc
     1141 ttggtagcat ttgagctctc agtcctgtgc cacagatccc cggatgtgcg tttctgatac
     1201 cgtgccagac tttccccctt aaaagacgtc agcttggcaa aatgatgctt aaaaaatgag
     1261 ttaagcattc aggaaaaaac actttcaata
//
LOCUS       XM_032617468             393 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glycoprotein hormone subunit beta 5
            (GPHB5), mRNA.
ACCESSION   XM_032617468
VERSION     XM_032617468.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..393
                     /gene="GPHB5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins"
                     /db_xref="GeneID:116746161"
     CDS             1..393
                     /gene="GPHB5"
                     /codon_start=1
                     /product="glycoprotein hormone beta-5"
                     /protein_id="XP_032473359.1"
                     /db_xref="GeneID:116746161"
                     /translation="MRLAYLFLGPAALLLLAGWGCVLSTSGGNLHTFVGCAVREFTFL
                     AKKPGCKGLRITTDACWGRCETWEKPILEPPYIEAHHRVCTYNETKQVTVKLPNCAPG
                     VDPFYTYPVAVRCDCGACSTATTECETI"
     misc_feature    106..387
                     /gene="GPHB5"
                     /note="Glycoprotein hormone beta chain homologues; Region:
                     GHB_like; cd00069"
                     /db_xref="CDD:200450"
     misc_feature    order(106..108,178..180,190..192,250..252,343..345,
                     349..351)
                     /gene="GPHB5"
                     /note="cysteine knot motif; other site"
                     /db_xref="CDD:200450"
     misc_feature    order(127..129,136..138,175..216,247..252,358..360,
                     364..366,373..387)
                     /gene="GPHB5"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:200450"
     misc_feature    order(214..216,364..369,376..378,382..387)
                     /gene="GPHB5"
                     /note="receptor binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:200450"
ORIGIN      
        1 atgaggctgg catacctctt ccttggccct gcggccctcc tcctcctggc tggctggggc
       61 tgtgtcctca gcacctccgg tgggaacctg cacacgtttg tgggctgtgc ggtgagagag
      121 tttactttcc tggccaagaa gcccggctgc aagggccttc ggatcaccac ggatgcctgc
      181 tggggccgct gtgaaacctg ggagaagccc attctggaac ccccctacat tgaagcccat
      241 catcgagtct gtacctacaa tgagaccaaa caggtgacgg tcaagctgcc caactgtgcc
      301 ccgggagtcg accccttcta cacctacccc gtggctgtcc gctgtgactg tggggcttgc
      361 tccactgcca ccacggagtg tgagaccatc tga
//
LOCUS       XM_032617475            2248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitory synaptic factor 1 (INSYN1),
            transcript variant X1, mRNA.
ACCESSION   XM_032617475
VERSION     XM_032617475.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2248
                     /gene="INSYN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746173"
     CDS             1232..2215
                     /gene="INSYN1"
                     /codon_start=1
                     /product="inhibitory synaptic factor 1 isoform X1"
                     /protein_id="XP_032473366.1"
                     /db_xref="GeneID:116746173"
                     /translation="MNIRGTPDLGQPSDDPSSGGERERIRQRMKMVIGQLEDILRELK
                     EVAKELRETDSRNPPTNYANLQDEPRTVNSLPATPSPAPQPSRKTINNVVSQIDKLTS
                     DFDFELEPDDWTTATVSSTSSSDKVGVGGPFDLGHLDFMTADILSDSWEFCSFLDIST
                     PSDSVDCPESTRPGAGPDYRLMNGSMPIPNGPRVETPDSSSEEAFSAGPVKGQLPQRT
                     PGTRERVRFSDKVLYHALCCDDEEGDGEEEVGLSPEPPHTEAHAGPLKPSPAPYKPRR
                     SPLTGRRSDPTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYMATRQKAKGKN"
     misc_feature    1508..2173
                     /gene="INSYN1"
                     /note="Domain of unknown function (DUF4589); Region:
                     DUF4589; pfam15252"
                     /db_xref="CDD:464592"
ORIGIN      
        1 ccccggggcc cggcgattcc ggacctttcc gaccgtggac tgagccgcgg gagcgttgtc
       61 gccccggaga accccggggc tagactgagc ggaccctcgc ggccgctccg gacgccgcag
      121 gtgccggagc gcggtcattc gaggtccggg ctgagcgcgc cccgggcgcc cacgggtgcc
      181 agctcactcc gggcagggca gggcagaccc cggcagagcc cggagccggc cgatctggac
      241 tggacagagc gaattcagga cggtgccgag ccccgggaat gccgggcgtg ggctgaaggg
      301 atcccggcgc cctccgatcc ctcagacttt ggcttgcgtg ctgggaccgg accggcgtcg
      361 cctcggtcgc cctgtgcccg gttcacctgt ggcctcagag ccccggaccc gccggaccct
      421 tgctcattcc ccaccagagc ccggcggggg ttgggagaga tttttcctgg cctcttcctt
      481 ggagcgtgga ggccccgccc cctcccaccg tccagatgtc tccagtggcg gctctgagga
      541 cctccttgag accaaggacc gaagggtcca gagagagaag cccgccctag ggagccttgg
      601 gggcccccca acctcgcctt gggacttggc ccccgacgct gcgcggaagg aaggccagtg
      661 cccccactcc ccccccttgg gggctgccct cctccaatcc agctcccttc ccagagccac
      721 acacatctgg agcccccttc acatctggaa gaccccagcc accatccctc tgcaggtgtc
      781 agttgcatct cgagacctct gcctttgcaa tttcctagga gttgtgaggg gattactgct
      841 gccttccgcc catcccaagg gcatctctta cccatagtcc ctgcagagtc atccccctgc
      901 ctctgtgtcc agctcagcat acccacaggc acttcaagtc ctagaggcca ctcctgagac
      961 ccaaggcccc tccccctgct ctcctgtttc ctcatcttga ccccccttgg tcagactctg
     1021 tctccctctg ggtgtcccat tccccaccca gaggtagagg aggcggggtg gcagggggca
     1081 ggggctgggt gagggccacc cagggccagg gtgggctagg gggccgttaa gatgtggagc
     1141 tctgcccagc tgaggggggc tccgtggagg cagacgcagc gtgtgcccgg ctggggggag
     1201 tatgggcagg cctgcagcca cgtggtaaag gatgaacatt cggggcaccc cggacctcgg
     1261 gcagcccagt gacgacccca gcagcggtgg cgagcgggag cggattcgac agcgcatgaa
     1321 gatggtcatt gggcagctgg aggacatact gcgggagctc aaggaggtgg ccaaggagct
     1381 aagggagaca gattcaagaa accccccgac caattatgcc aacttgcagg atgaaccacg
     1441 cacggtcaac tcgctccccg ccaccccttc cccagctcca cagccctcca ggaagacaat
     1501 aaataacgtg gtgagccaga tcgataagct aacctcggac ttcgacttcg aactggagcc
     1561 agatgactgg accacagcca ccgtgagcag cacctccagc agcgacaagg tgggcgtggg
     1621 cggccccttt gacctgggcc acctggactt tatgacagct gacatcctct cggatagctg
     1681 ggagttctgc tccttcctgg acatctccac cccctcagac tccgtggact gccccgagtc
     1741 gacccggccg ggggctggcc ctgactaccg gctcatgaat ggcagcatgc ccatccccaa
     1801 cgggccccgg gtggagaccc cggactcctc cagcgaggag gccttcagcg ctggccctgt
     1861 gaagggccag ctgccccagc ggaccccggg cacacgggag agggtgcgat tcagcgacaa
     1921 agtgctctac catgctctat gctgtgacga cgaggagggg gacggcgagg aggaggtggg
     1981 cctgtcccca gagcctcccc acacagaggc ccatgcgggc cccctcaagc cctccccggc
     2041 tccctacaag ccgaggcgct ctccactgac tggccgccgc tcagacccca ccttggcccc
     2101 cgagcagacc cgaagggtca caagaaacag cagcacccaa acggtgtcag acaagagcac
     2161 tcagacggtg ctgccctaca tggccaccag acagaaagcc aaggggaaaa actaggggcc
     2221 ggggagggag ccggggggca gggggcac
//
LOCUS       XM_032617481            2137 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inhibitory synaptic factor 1 (INSYN1),
            transcript variant X2, mRNA.
ACCESSION   XM_032617481
VERSION     XM_032617481.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2137
                     /gene="INSYN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746173"
     CDS             1206..2069
                     /gene="INSYN1"
                     /codon_start=1
                     /product="inhibitory synaptic factor 1 isoform X2"
                     /protein_id="XP_032473372.1"
                     /db_xref="GeneID:116746173"
                     /translation="MNIRGTPDLGQPSDDPSSGGERERIRQRMKMVIGQLEDILRELK
                     EVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKVGVGGPFDLGHLDFMT
                     ADILSDSWEFCSFLDISTPSDSVDCPESTRPGAGPDYRLMNGSMPIPNGPRVETPDSS
                     SEEAFSAGPVKGQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEEEVGLSPEPPHT
                     EAHAGPLKPSPAPYKPRRSPLTGRRSDPTLAPEQTRRVTRNSSTQTVSDKSTQTVLPY
                     MATRQKAKGKN"
     misc_feature    1359..2027
                     /gene="INSYN1"
                     /note="Domain of unknown function (DUF4589); Region:
                     DUF4589; pfam15252"
                     /db_xref="CDD:464592"
ORIGIN      
        1 ttccgaccgt ggactgagcc gcgggagcgt tgtcgccccg gagaaccccg gggctagact
       61 gagcggaccc tcgcggccgc tccggacgcc gcaggtgccg gagcgcggtc attcgaggtc
      121 cgggctgagc gcgccccggg cgcccacggg tgccagctca ctccgggcag ggcagggcag
      181 accccggcag agcccggagc cggccgatct ggactggaca gagcgaattc aggacggtgc
      241 cgagccccgg gaatgccggg cgtgggctga agggatcccg gcgccctccg atccctcaga
      301 ctttggcttg cgtgctggga ccggaccggc gtcgcctcgg tcgccctgtg cccggttcac
      361 ctgtggcctc agagccccgg acccgccgga cccttgctca ttccccacca gagcccggcg
      421 ggggttggga gagatttttc ctggcctctt ccttggagcg tggaggcccc gccccctccc
      481 accgtccaga tgtctccagt ggcggctctg aggacctcct tgagaccaag gaccgaaggg
      541 tccagagaga gaagcccgcc ctagggagcc ttgggggccc cccaacctcg ccttgggact
      601 tggcccccga cgctgcgcgg aaggaaggcc agtgccccca ctcccccccc ttgggggctg
      661 ccctcctcca atccagctcc cttcccagag ccacacacat ctggagcccc cttcacatct
      721 ggaagacccc agccaccatc cctctgcagg tgtcagttgc atctcgagac ctctgccttt
      781 gcaatttcct aggagttgtg aggggattac tgctgccttc cgcccatccc aagggcatct
      841 cttacccata gtccctgcag agtcatcccc ctgcctctgt gtccagctca gcatacccac
      901 aggcacttca agtcctagag gccactcctg agacccaagg cccctccccc tgctctcctg
      961 tttcctcatc ttgacccccc ttggtcagac tctgtctccc tctgggtgtc ccattcccca
     1021 cccagaggta gaggaggcgg ggtggcaggg ggcaggggct gggtgagggc cacccagggc
     1081 cagggtgggc tagggggccg ttaagatgtg gagctctgcc cagctgaggg gggctccgtg
     1141 gaggcagacg cagcgtgtgc ccggctgggg ggagtatggg caggcctgca gccacgtggt
     1201 aaaggatgaa cattcggggc accccggacc tcgggcagcc cagtgacgac cccagcagcg
     1261 gtggcgagcg ggagcggatt cgacagcgca tgaagatggt cattgggcag ctggaggaca
     1321 tactgcggga gctcaaggag gtggccaagg agctaaggga ggtggtgagc cagatcgata
     1381 agctaacctc ggacttcgac ttcgaactgg agccagatga ctggaccaca gccaccgtga
     1441 gcagcacctc cagcagcgac aaggtgggcg tgggcggccc ctttgacctg ggccacctgg
     1501 actttatgac agctgacatc ctctcggata gctgggagtt ctgctccttc ctggacatct
     1561 ccaccccctc agactccgtg gactgccccg agtcgacccg gccgggggct ggccctgact
     1621 accggctcat gaatggcagc atgcccatcc ccaacgggcc ccgggtggag accccggact
     1681 cctccagcga ggaggccttc agcgctggcc ctgtgaaggg ccagctgccc cagcggaccc
     1741 cgggcacacg ggagagggtg cgattcagcg acaaagtgct ctaccatgct ctatgctgtg
     1801 acgacgagga gggggacggc gaggaggagg tgggcctgtc cccagagcct ccccacacag
     1861 aggcccatgc gggccccctc aagccctccc cggctcccta caagccgagg cgctctccac
     1921 tgactggccg ccgctcagac cccaccttgg cccccgagca gacccgaagg gtcacaagaa
     1981 acagcagcac ccaaacggtg tcagacaaga gcactcagac ggtgctgccc tacatggcca
     2041 ccagacagaa agccaagggg aaaaactagg ggccggggag ggagccgggg ggcagggggc
     2101 acatagagct ataaatatat atatatattt aaacaaa
//
LOCUS       XM_032617490            1833 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proline-serine-threonine phosphatase
            interacting protein 1 (PSTPIP1), mRNA.
ACCESSION   XM_032617490
VERSION     XM_032617490.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1833
                     /gene="PSTPIP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 10 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746191"
     CDS             414..1661
                     /gene="PSTPIP1"
                     /codon_start=1
                     /product="proline-serine-threonine phosphatase-interacting
                     protein 1"
                     /protein_id="XP_032473381.1"
                     /db_xref="GeneID:116746191"
                     /translation="MPQLQFKDAFWCRDFTAHTGYEVLLQRLLDGRRTCKDVEELLRQ
                     RAQAEERYGKDLVQIARKAGGQTEINSLRASFDSLKQQMENVGSAHIQLALALREELR
                     SLEEFRERQKEQRRKYEAIMDRVQKSKLLLHKKAMESKKTYEQKCRDADDAEQAFERI
                     STNGQQKQVEKSQNKAKQCKDSAMEAERVYRQNIEQLEKVRGEWEQEHRATCEAFQLQ
                     EFDRLTILRNALWVHCNQLSMQCVKDDELYEEVRVTLEGCSVDADIDSFIQAKSTGTE
                     PPAPVPYQNYYDREVAPLSSSPGVQPSCGMIKRFSGLLHGSPKTTSSAASAASTETLT
                     PTSDRNEGVYAAIAVQEVPGPHTLPAQDYRALYDYTAQNSDELNISAGDILEVIQEGE
                     DGWWTVQRNGQRGFVPGSYLEKL"
     misc_feature    456..1181
                     /gene="PSTPIP1"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; Region: BAR; cl12013"
                     /db_xref="CDD:472257"
     misc_feature    order(471..473,480..485,495..497,501..506,513..518,
                     522..527,555..560,564..569,576..581,585..590,597..599,
                     666..668,675..680,1047..1049,1056..1061,1065..1067,
                     1071..1073,1080..1085,1089..1094,1101..1106,1113..1118,
                     1122..1127,1134..1139,1143..1148)
                     /gene="PSTPIP1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153271"
     misc_feature    1497..1655
                     /gene="PSTPIP1"
                     /note="Src homology 3 domain of Proline-Serine-Threonine
                     Phosphatase-Interacting Protein 1; Region: SH3_PSTPIP1;
                     cd11824"
                     /db_xref="CDD:212758"
     misc_feature    order(1512..1514,1518..1520,1527..1529,1539..1541,
                     1593..1598,1635..1637,1641..1646)
                     /gene="PSTPIP1"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212758"
ORIGIN      
        1 caaacctacc tgcacaggcc ccgggctgcg tctcccactg acccctgcct ccctacagcc
       61 cggggctggc atccctgctc tcagtcctga agcctgggct gtgtcctccg tctccacggg
      121 gctggtgagg ggccgggccg gacactggga cccgccctcc catcactggg caccagccct
      181 tcctcatttt gctgctgatt ctagccccaa acaaaacagg ttgagccctt ttcctccctc
      241 cagcagtctc tggcttacag ctgccttctg aggcactgca gacggcgccg gcctggaagg
      301 ggggccctgg gccagcgctg ccaggacggg gacggtgcgc ctgcctcctg gccctcgttc
      361 agccctgtct gtggcaggag agggagcttt gccgtggcag tcggctgagg aagatgcccc
      421 agcttcagtt caaagatgcc ttttggtgca gggacttcac ggcccacacg ggctacgagg
      481 tgctgctgca gcggctgctg gacggcagga ggacctgcaa ggacgtggag gagctgctga
      541 ggcagagggc ccaggcagag gaacggtatg ggaaggacct ggtgcagatc gcccggaagg
      601 caggcggcca gacagagatc aactccctga gggcctcctt tgactctctg aagcagcaaa
      661 tggagaacgt gggcagcgcc cacatccagc tggccctggc cctgcgtgag gagttgcgga
      721 gcctggagga gtttcgtgag aggcagaagg agcagaggag gaagtatgag gccatcatgg
      781 accgtgtcca gaagagcaag ctgttgctcc acaagaaggc catggagtcc aagaagacat
      841 atgagcagaa gtgccgagat gcagacgacg ccgagcaggc cttcgagcgc attagcacca
      901 acggtcagca gaagcaggtg gagaagagcc agaacaaagc caagcagtgc aaggactcag
      961 ccatggaggc agagcgcgtg tataggcaga acatcgagca gctggagaag gtgcggggcg
     1021 agtgggagca ggagcaccgg gccacctgtg aggcctttca gctgcaagag tttgaccggc
     1081 tgaccatcct ccgcaatgct ctgtgggtgc actgcaacca gctctccatg cagtgcgtca
     1141 aggatgatga gctctacgaa gaggtgcgag tgacgctaga aggctgcagt gtggatgccg
     1201 acatagacag cttcatccag gccaagagca cgggcactga gcccccagct ccggtgccct
     1261 accagaacta ctatgatcgg gaggtggccc cgttgtccag cagccctggt gttcagccgt
     1321 cctgtggcat gataaagagg ttctctgggc tgctgcatgg aagtcccaaa acaacatcgt
     1381 cagcagcttc tgcggcctcc acagagaccc tgactcccac ctctgatcgg aatgagggtg
     1441 tctatgccgc catcgctgtg caggaggtgc caggacccca caccctgcca gcccaggatt
     1501 acagggcgct ctatgactac acagcccaga attccgatga gctgaacatc tctgcagggg
     1561 acatcctgga ggtcatccag gaaggggagg atggctggtg gacagtgcaa cggaatgggc
     1621 agcgtggctt tgtccctggc tcctacctgg agaagcttta aggaaggggc agtagccccc
     1681 gcctggacct gtcctgtcca tggggccagc agtgccccca ccgctgccct ggcctcacag
     1741 gggcctcaag acagaaccta ccctcaggaa aggtaccggc tgctcccgag cagtccttcc
     1801 cacagggaat aaaggagcgc tctttttcct cct
//
LOCUS       XM_032617500            3100 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tetraspanin 3 (TSPAN3), transcript
            variant X1, mRNA.
ACCESSION   XM_032617500
VERSION     XM_032617500.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3100
                     /gene="TSPAN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746202"
     CDS             209..1036
                     /gene="TSPAN3"
                     /codon_start=1
                     /product="tetraspanin-3 isoform X1"
                     /protein_id="XP_032473391.1"
                     /db_xref="GeneID:116746202"
                     /translation="MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHF
                     FEDVYTLIPAVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVV
                     LGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTD
                     WFKETKNQSVPLSCCRETTSSCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALA
                     FAAIQNCSPAQLPLPGEATIISVLDGLHLVSRSYSCPTHCLPCIRGAIVSLYYFWGE"
     misc_feature    233..>655
                     /gene="TSPAN3"
                     /note="Tetraspanin family; Region: Tetraspanin; pfam00335"
                     /db_xref="CDD:459767"
     misc_feature    518..838
                     /gene="TSPAN3"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF8_like subfamily.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     Region: TM4SF8_like_LEL; cd03163"
                     /db_xref="CDD:239416"
     misc_feature    order(524..526,539..541,551..553,557..562,569..571,
                     617..619,626..631,638..643)
                     /gene="TSPAN3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239416"
ORIGIN      
        1 gtgtggcgcg gtggcctggc ggagactgcg gcggctgcgc ggaggagcga ggtgcttgct
       61 gggctagggg tgggcgacgg ctccgggggc tgcggtgaac gcttcgcagg ccgtgcagtt
      121 cccacaggga aggcgccgtc gccattgacg cctcgctcgg tgagcgcgtc ccgctcgccg
      181 agcagggcct cagccgaccg ccggcaccat gggccagtgc ggcatcacct cctccaagac
      241 cgtgctggtg tttctcaacc tcatcttctg gggagcagct ggcattttat gctatgtggg
      301 agcctatgtc ttcatcactt atgacgacta tgaccacttc tttgaagatg tgtacactct
      361 catccctgct gtggtgatca tagctgtagg agccctgctc ttcattattg ggctaattgg
      421 ctgctgtgcc acaatccggg aaagccgctg tggacttgcc acgtttgtca tcatcctact
      481 cttggttttt gtcacagaag ttgttgtagt ggttttggga tatgtttaca gagcaaaggt
      541 ggaaaatgag gttgatcgca gcattcagaa agtatataag acctacaatg gaaccaaccc
      601 tgatgctgct agccgggcta ttgattatgt acagagacag ctgcattgtt gtggaattca
      661 caactattca gactgggaaa atacagactg gttcaaagaa accaaaaacc agagtgtccc
      721 tcttagctgt tgcagagaga ccaccagcag ctgtaatggc agtctggccc acccctctga
      781 cctctatgcc gaggggtgtg aggctctagt tgtgaagaag ctacaagaaa tcatgatgca
      841 cgttatctgg gcagcactgg catttgcagc tattcagaat tgctctccag cccagttgcc
      901 acttcctgga gaagccacca tcatctctgt gttggacggc ctgcacctgg tctcccggtc
      961 ctactcgtgc cctactcact gtctaccttg tatcagaggg gcaatagtgt ctctgtacta
     1021 cttctggggt gagtgagctc tttgacagca cccccttatc ttagtaccca cccccccatt
     1081 ttcaaataca gtgtcagtca cacagaagtc atcaaaatac cttgcttgat tgaattactt
     1141 ctgacagctc tcatatctgg ctgtcctggg caacgtttct ggcccaggca agcatttgtg
     1201 taagcagggc tttagtcact gacttctctc tctctccttc agggagcata aaagcaagcg
     1261 caagtttaca tttttctttc caaacatccc tatttataaa cctcagctgt gtcagggaca
     1321 ggtatggtca tttggtcagt tcacttgtac aatatgcttt ataaaagaca atttatttac
     1381 atttcaggaa ggatttaagc ctcagtctga tttttttcag aggcccaaag ccctttccca
     1441 ccccgtctgc catacaccct ctggcggaag cagtggtggg gtggcatcta gcggagggta
     1501 gttggagctg tgcttccagg accctaccct gcacccaggg gctgccctgt gccttttcac
     1561 ctctgcctgg tcccagcatg aataacactg ggtggaaaca accctttcat gctttgtaga
     1621 ctttcgaggt gttctcacac ctgagtctga ggtcagaggc cacagtctgg ccattccccc
     1681 tccttgacca ggtgtcatgt ttgcttaatc aaacccactt ttttgcttaa gtgatgaaga
     1741 taagggcata aagatggacg tctgcaataa acagaggaac agccctcttt accagcccct
     1801 cctggtcatc ttcctagggc agagcttggt caaaggcctc atttttgcta ctgtggcatc
     1861 tgatgtttgc ctgagcacgt ggaatgttcc tccgtatggc tgccaggtgg atggctggcc
     1921 aggcagagcc aggacccgtg ggaagccaca ggtccacggc aggcttccgt gggtgccgtg
     1981 agctcccagt cacagagatg ttgaagctga caggagtgcc tggtgcccag tcgtgcagga
     2041 cgtcagatta gattccccca gagtctcttc tagttctaaa tcctggagaa tttagtgatg
     2101 cccctcgctc ccttctctgt ccctgccatc acaggcaggc aggagcagaa aggaaccccc
     2161 ctctttcctt tcctggaaca acttcccctt ttccttggct tatcttggtc acttgttccc
     2221 agaagcctca ggactgcttg gcacatcagg acgtttcctg tactgccacc agctttctgg
     2281 tctatctgtt cccctccacc aggtcaaggg ccccttgagt aaagccagtg tctgaggcat
     2341 tcctcctctt gagctcacag ggggtgggcc acaaaggtta acgaacgagc aagcgaagtg
     2401 atgaagtccc agggaaggtg gtctacgggg acagtaacag gctcactcaa ggtgtgccca
     2461 gtggaggagg cccccccgca tgtctggccc tgagtcggct ggcctgctgt gctggcagag
     2521 tgttggggct cccacaggca agcgctgggg aggcctagga ctgcggtgcg gccggttccc
     2581 actggctctc cccctccgca gtcactcccc aggcccttgg catggctgga gcagggccgt
     2641 ggcaggcctt gggcagcagt agaagttacg tttctggggc caaaaagaca aaggctggag
     2701 agcaccaaga gcggaagaaa agcttggcca cctctgtgcc caggtcagcc cacatagact
     2761 ccaggcctgc ctaagcaaca atgccacagc ccctccgcct cggcagacct gtcacctgtt
     2821 tcctgcctgg aactaagctt ggctcatccc cagaacgttc caggtgtccc tcctccctgt
     2881 gctcacacac ctgccctgtc ctgctgctct tgccttccct gtgttctgtc tgctgctgcc
     2941 ctggtctagt gcctctgccc caggaagcct ggtctcccca tcccagctgt cccgagcgtc
     3001 tccttgcccc taccccatcc tccctgaccg ctgcggcctt ctcccattgc ccgctgtgaa
     3061 cgtgtctccc tggcagttcc ccgggaccca gggctggggt
//
LOCUS       XM_032617507            1860 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus tetraspanin 3 (TSPAN3), transcript
            variant X2, mRNA.
ACCESSION   XM_032617507
VERSION     XM_032617507.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1860
                     /gene="TSPAN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 11 long SRA reads, 15
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746202"
     CDS             288..1049
                     /gene="TSPAN3"
                     /codon_start=1
                     /product="tetraspanin-3 isoform X2"
                     /protein_id="XP_032473398.1"
                     /db_xref="GeneID:116746202"
                     /translation="MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHF
                     FEDVYTLIPAVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVV
                     LGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTD
                     WFKETKNQSVPLSCCRETTSSCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALA
                     FAAIQLLGMLCACIVLCRRSRDPAYELLITGGTYA"
     misc_feature    312..992
                     /gene="TSPAN3"
                     /note="Tetraspanin family; Region: Tetraspanin; pfam00335"
                     /db_xref="CDD:459767"
     misc_feature    597..917
                     /gene="TSPAN3"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF8_like subfamily.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     Region: TM4SF8_like_LEL; cd03163"
                     /db_xref="CDD:239416"
     misc_feature    order(603..605,618..620,630..632,636..641,648..650,
                     696..698,705..710,717..722)
                     /gene="TSPAN3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239416"
ORIGIN      
        1 aagaggcgtg gcttcgctgt agaaccacgg gagtgattgg ctgaagctgc ctgtccgggg
       61 gcgggactcg gttgccgggg tgtggcgcgg tggcctggcg gagactgcgg cggctgcgcg
      121 gaggagcgag gtgcttgctg ggctaggggt gggcgacggc tccgggggct gcggtgaacg
      181 cttcgcaggc cgtgcagttc ccacagggaa ggcgccgtcg ccattgacgc ctcgctcggt
      241 gagcgcgtcc cgctcgccga gcagggcctc agccgaccgc cggcaccatg ggccagtgcg
      301 gcatcacctc ctccaagacc gtgctggtgt ttctcaacct catcttctgg ggagcagctg
      361 gcattttatg ctatgtggga gcctatgtct tcatcactta tgacgactat gaccacttct
      421 ttgaagatgt gtacactctc atccctgctg tggtgatcat agctgtagga gccctgctct
      481 tcattattgg gctaattggc tgctgtgcca caatccggga aagccgctgt ggacttgcca
      541 cgtttgtcat catcctactc ttggtttttg tcacagaagt tgttgtagtg gttttgggat
      601 atgtttacag agcaaaggtg gaaaatgagg ttgatcgcag cattcagaaa gtatataaga
      661 cctacaatgg aaccaaccct gatgctgcta gccgggctat tgattatgta cagagacagc
      721 tgcattgttg tggaattcac aactattcag actgggaaaa tacagactgg ttcaaagaaa
      781 ccaaaaacca gagtgtccct cttagctgtt gcagagagac caccagcagc tgtaatggca
      841 gtctggccca cccctctgac ctctatgccg aggggtgtga ggctctagtt gtgaagaagc
      901 tacaagaaat catgatgcac gttatctggg cagcactggc atttgcagct attcagctgc
      961 tgggcatgct gtgtgcctgc atcgtactgt gcagaaggag tagagatcct gcttatgagc
     1021 tgctcatcac cggtggaacc tatgcatagt agaaaactca aacctgagct ttttcagtct
     1081 tgttctgatt tggaaggtga attgagcagg tccactgcta ttggcctcct gagttcattt
     1141 agttaaagca cacgtacaca ggtgtcggac agagcagttt ggctcttcac gtgtccacct
     1201 tcttacctac ccacctgtga gtttcttttc ccctgttcta gctgactctc catgtccgta
     1261 agtgtttaag tacggtggta aatgttctaa tctcagaacc atttgcgagt tgcgtagtgt
     1321 ggtagaatta aaggcagaca tgagcctgct tctgttacct ccaagcagta atgggactgc
     1381 tgctgaagta tcaccgggtc ctttcagtct tcacaatgga gaactcttgg ccaaaggttt
     1441 ttgcggggag ggggagacag tcagctgtct ggttaaagtt aataccagat ggtgcccctc
     1501 atcagtgtcc ttttaaaaaa tatatactat agttcagtaa gatagcaact gtacaaaatg
     1561 gctaaaatag attttagaat catacagcgt gtatcttggt tcatcttcaa aatcagactg
     1621 atctttgaaa ctagcggttt ttaatcaaag ctggctttat aggaggagtg taatgtatgc
     1681 actactgttt taaaacaatg agtgtgtgcg tgtgtttttt tgtatgattg agcccattca
     1741 ttgtaagtct aaactcgtta gaaataatgt acccatgtag actagcaaaa tagtatgtag
     1801 atgtgatctc agttgtaaat agaaaaatct aattcaataa actctgtatc accccctcaa
//
LOCUS       XM_032617517            1951 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromogranin A (CHGA), transcript variant
            X1, mRNA.
ACCESSION   XM_032617517
VERSION     XM_032617517.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1951
                     /gene="CHGA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 8
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746218"
     CDS             196..1533
                     /gene="CHGA"
                     /codon_start=1
                     /product="chromogranin-A isoform X1"
                     /protein_id="XP_032473408.1"
                     /db_xref="GeneID:116746218"
                     /translation="MRSAAVLALLLCAGQVIALPVNSPINKGDTEVMKCIVEVISDTL
                     SKPSPMPVSQECFETLRGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSSYED
                     ELSEVLEKQNDQAELKEGTEEASSKDAMEKRGDSKEVERNGEDADGPRPQASPELGQG
                     SKPEEDNQAPGEEEASSNTHPLASLSSQKQPGPQAEEDSEGPSQGPVGREKGLSAEQG
                     QQAKREEEAEAGEEAVPEEESAPTAAFNPHSSLGYKEMQRGESWPEALAVDGAGKTGA
                     EEAPSPKGKGERDHCLQEEATAGAPQGLFRGGKSAQPEQEGEGRLPKEWEDAKRRSAM
                     DQLAKELTAERRPQGEAAEEDPDRAMKLSLRARGYDFSGPGLQLPRGWRPSSREDSVE
                     AGLPLPVRGYQEEKKEEEGSANRRPEDQELESLSAIEAELEKVAHELQGLRRG"
     misc_feature    271..1530
                     /gene="CHGA"
                     /note="Granin (chromogranin or secretogranin); Region:
                     Granin; pfam01271"
                     /db_xref="CDD:279595"
ORIGIN      
        1 ctgctgcagt gcccgagccc agaggggaaa ggtggtgggg ggatcgacag gcggacgcac
       61 acggagacct tgcgaccccc atccccgcgc ctgtgtcgcc gaggccgccc ggagcgacca
      121 gtccagccac ccctcgcccc agtgcgcgcc gcgcccggcc ccagaccgcc agctgctcgg
      181 cgccccgggt tcgccatgcg ctccgcagcg gtcctagcgc ttctactctg cgccgggcaa
      241 gtcattgccc tccctgtgaa cagccctata aataaagggg acactgaggt gatgaagtgc
      301 atcgtggagg tcatttctga cacgctctcc aagcccagcc ccatgcctgt cagccaggag
      361 tgtttcgaga cactccgagg agatgaacgg atcctctcaa tcctgcgaca tcagaatttg
      421 ctgaaagagc tccaagacct cgctctccaa ggagccaagg agagggcaca tcagcagaag
      481 aaacacagca gttatgagga tgaactctca gaggttcttg agaagcagaa tgaccaggcc
      541 gagctgaagg aggggacaga agaggcgtcc tccaaggatg ctatggaaaa aagaggagat
      601 tctaaagagg tggagaggaa tggtgaagat gcggatggac ccaggcctca ggcctccccg
      661 gagcttgggc aggggtccaa gcctgaggag gacaaccagg ccccagggga ggaggaggcc
      721 tcctccaata cccaccccct agccagcctc tccagccaga aacaaccagg cccacaggcc
      781 gaggaggaca gcgagggccc ctcccagggt ccagtgggca gagagaaggg cctgagtgcc
      841 gagcaagggc agcaggcaaa gagagaagag gaggccgagg ctggagagga ggctgtcccg
      901 gaggaagaaa gcgcccccac cgcagcattt aacccccact cgagcctcgg ctacaaggag
      961 atgcagaggg gtgagagttg gcccgaggct ctggctgtgg atggagccgg gaagactggg
     1021 gctgaggagg cgccatcccc caaggggaag ggggagcggg accattgcct gcaggaggag
     1081 gcgacggcag gggccccgca aggcctcttc cggggcggga agagcgcgca gcctgagcag
     1141 gagggggagg ggcggctccc caaggagtgg gaggatgcca agcgacggag cgcgatggac
     1201 cagctggcca aggagctgac cgccgagagg cggccgcagg gggaggcggc ggaggaggac
     1261 ccggaccggg ccatgaagct ctccttacgg gcccggggct acgacttcag cggtcctggg
     1321 ctgcagctgc cacgaggctg gaggccatcc tcccgggagg acagcgtcga ggcgggcctg
     1381 cccctaccgg tgcgtggcta ccaggaggag aagaaagagg aggagggcag cgccaaccgc
     1441 agaccagagg accaggagct ggagagcctg tcggccatcg aggcggagct ggagaaggtg
     1501 gcccacgagc tgcaggggct acggcggggc tgaggcgccg gctggcccca ccagccaggg
     1561 ccccgaggca ccctgtggtc ctggctctgt tgtccccttg gcaggtcttg gccagatggc
     1621 ctgggcgctg cttccggtag ggagaccgcc cccaacctgc ccaagcccaa gccaccctgt
     1681 tgcccctacg ctcctttcct cctgtacttg acccctgcct cagtgtggcc cccgcagggc
     1741 ggacccctga ctttaaacaa ttttcctctc tctgaacacg ggcagctttc tcgaagcttc
     1801 ccttccacca ttagagccat tgggcacaac tgcaataact tctgactttt gggtgaaagc
     1861 tgagaactcc tgactctaac atacactgta caaaatttat ctaaggataa ataaatctgc
     1921 tctgggctct tccctgtttc tttgaacctt c
//
LOCUS       XM_032617522            1928 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromogranin A (CHGA), transcript variant
            X2, mRNA.
ACCESSION   XM_032617522
VERSION     XM_032617522.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1928
                     /gene="CHGA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 4
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746218"
     CDS             203..1534
                     /gene="CHGA"
                     /codon_start=1
                     /product="chromogranin-A isoform X2"
                     /protein_id="XP_032473413.1"
                     /db_xref="GeneID:116746218"
                     /translation="MRSAAVLALLLCAGQVIALPVNSPINKGDTEVMKCIVEVISDTL
                     SKPSPMPVSQECFETLRGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSSYED
                     ELSEVLEKQNDQAELKEGTEEASSKDAMEKRGDSKEVERNGEDADGPRPQASPELGQG
                     SKPEEDNQAPGEEEASSNTHPLASLSSQKQPGPQAEEDSEGPSQGPVGREKGLSAEQG
                     QQAKREEEAEAGEEAVPEEESAPTAAFNPHSSLGYKEMQRGWPEALAVDGAGKTGAEE
                     APSPKGKGERDHCLQEEATAGAPQGLFRGGKSAQPEQEGEGRLPKEWEDAKRRSAMDQ
                     LAKELTAERRPQGEAAEEDPDRAMKLSLRARGYDFSGPGLQLPRGWRPSSREDSVEAG
                     LPLPVRGYQEEKKEEEGSANRRPEDQELESLSAIEAELEKVAHELQGLRRG"
     misc_feature    278..1531
                     /gene="CHGA"
                     /note="Granin (chromogranin or secretogranin); Region:
                     Granin; pfam01271"
                     /db_xref="CDD:279595"
ORIGIN      
        1 ggtgccactg ctgcagtgcc cgagcccaga ggggaaaggt ggtgggggga tcgacaggcg
       61 gacgcacacg gagaccttgc gacccccatc cccgcgcctg tgtcgccgag gccgcccgga
      121 gcgaccagtc cagccacccc tcgccccagt gcgcgccgcg cccggcccca gaccgccagc
      181 tgctcggcgc cccgggttcg ccatgcgctc cgcagcggtc ctagcgcttc tactctgcgc
      241 cgggcaagtc attgccctcc ctgtgaacag ccctataaat aaaggggaca ctgaggtgat
      301 gaagtgcatc gtggaggtca tttctgacac gctctccaag cccagcccca tgcctgtcag
      361 ccaggagtgt ttcgagacac tccgaggaga tgaacggatc ctctcaatcc tgcgacatca
      421 gaatttgctg aaagagctcc aagacctcgc tctccaagga gccaaggaga gggcacatca
      481 gcagaagaaa cacagcagtt atgaggatga actctcagag gttcttgaga agcagaatga
      541 ccaggccgag ctgaaggagg ggacagaaga ggcgtcctcc aaggatgcta tggaaaaaag
      601 aggagattct aaagaggtgg agaggaatgg tgaagatgcg gatggaccca ggcctcaggc
      661 ctccccggag cttgggcagg ggtccaagcc tgaggaggac aaccaggccc caggggagga
      721 ggaggcctcc tccaataccc accccctagc cagcctctcc agccagaaac aaccaggccc
      781 acaggccgag gaggacagcg agggcccctc ccagggtcca gtgggcagag agaagggcct
      841 gagtgccgag caagggcagc aggcaaagag agaagaggag gccgaggctg gagaggaggc
      901 tgtcccggag gaagaaagcg cccccaccgc agcatttaac ccccactcga gcctcggcta
      961 caaggagatg cagaggggtt ggcccgaggc tctggctgtg gatggagccg ggaagactgg
     1021 ggctgaggag gcgccatccc ccaaggggaa gggggagcgg gaccattgcc tgcaggagga
     1081 ggcgacggca ggggccccgc aaggcctctt ccggggcggg aagagcgcgc agcctgagca
     1141 ggagggggag gggcggctcc ccaaggagtg ggaggatgcc aagcgacgga gcgcgatgga
     1201 ccagctggcc aaggagctga ccgccgagag gcggccgcag ggggaggcgg cggaggagga
     1261 cccggaccgg gccatgaagc tctccttacg ggcccggggc tacgacttca gcggtcctgg
     1321 gctgcagctg ccacgaggct ggaggccatc ctcccgggag gacagcgtcg aggcgggcct
     1381 gcccctaccg gtgcgtggct accaggagga gaagaaagag gaggagggca gcgccaaccg
     1441 cagaccagag gaccaggagc tggagagcct gtcggccatc gaggcggagc tggagaaggt
     1501 ggcccacgag ctgcaggggc tacggcgggg ctgaggcgcc ggctggcccc accagccagg
     1561 gccccgaggc accctgtggt cctggctctg ttgtcccctt ggcaggtctt ggccagatgg
     1621 cctgggcgct gcttccggta gggagaccgc ccccaacctg cccaagccca agccaccctg
     1681 ttgcccctac gctcctttcc tcctgtactt gacccctgcc tcagtgtggc ccccgcaggg
     1741 cggacccctg actttaaaca attttcctct ctctgaacac gggcagcttt ctcgaagctt
     1801 cccttccacc attagagcca ttgggcacaa ctgcaataac ttctgacttt tgggtgaaag
     1861 ctgagaactc ctgactctaa catacactgt acaaaattta tctaaggata aataaatctg
     1921 ctctgggc
//
LOCUS       XM_032617534            4274 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inter-alpha-trypsin inhibitor heavy chain
            5 (ITIH5), transcript variant X1, mRNA.
ACCESSION   XM_032617534
VERSION     XM_032617534.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4274
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4274
                     /gene="ITIH5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746230"
     CDS             92..2905
                     /gene="ITIH5"
                     /codon_start=1
                     /product="inter-alpha-trypsin inhibitor heavy chain H5
                     isoform X1"
                     /protein_id="XP_032473425.1"
                     /db_xref="GeneID:116746230"
                     /translation="MLPLLGLCLALPFCAGSLEEVQSWGDTSEQVALRVPRQVRLLQR
                     LKTKPLMTEFSVKSTIISRYAFTTVACRLLNRASEDQEITFQMQIPAAAFITNFTMLI
                     GDKVYQGEITEKEKKNGDKVKEKRNKTTEVSGEKGTETFRASVVLPSKDKAAFLLSYE
                     ELLQRRLGKYEHVVSVRPQQLVGRLTVEVTILERSGITALEVLGLQNSRRQGSGRGQD
                     DSGPPPSTVINQNETFAKVVFKPTVVQQAKIAQNGILGDFIIRYDVNREQSIGDIQVL
                     NGYFVHYFAPKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDRFNII
                     GFSNRVKVWKDHLVSVTPNNIRDGKVYIHHMSPTGGTDINGALQRGIRLLNDFVAHND
                     IEDRSVSLVIFLTDGKPTAGETHTPKILNNTREAARGRVCIFTVGIGADVDFKLLEML
                     SLENCGLTRHVHEDHDARAQLIGFYDEIRTPLLSDIRVDYPPGLVEHATRTLFPNYFN
                     GSEIIIAGKLVDKEMDRLHVEVTASNSKKFVVLKKDVPVEPRRMGNDVPGSPRPKGGG
                     QEHPNHLERLWSYLTLKELLSSWLQSDEQPERERLRQEVQALAMNHHFLAPFTSMTLK
                     SAPRTETPEDAYGTSAATGPETVMQSLRGAHLQPGPALKKPYNPRIKVSKTSADGDPH
                     FVVDFPLSNLTVCFNIDGQPGHILRLVSDHADSGVTVNGELIGAPAPPNGHKKQRTYF
                     RTITILVNKPERSYLEITPTRVIVDGGDRLVLPCNQSAAVGSQGLEVSVSANAKVTIA
                     IQGNVAFVILLHLYKKPAPYQRNHLGFYVANGQGLSGNCHGLLGQFLNQEARLTGLGK
                     SPAHPSVPETGERSEAVLEVKGHQVPVVWKQRKIYNGEEQVDCWFARNNAANLIDGEY
                     KDYLAAHPFDSETTFGPGTSRGL"
     misc_feature    242..568
                     /gene="ITIH5"
                     /note="Vault protein inter-alpha-trypsin domain; Region:
                     VIT; pfam08487"
                     /db_xref="CDD:462492"
     misc_feature    965..1510
                     /gene="ITIH5"
                     /note="vWA_interalpha trypsin inhibitor (ITI): ITI is a
                     glycoprotein composed of three polypeptides- two heavy
                     chains and one light chain (bikunin). Bikunin confers the
                     protease-inhibitor function while the heavy chains are
                     involved in rendering stability to...; Region:
                     vWA_interalpha_trypsin_inhibitor; cd01461"
                     /db_xref="CDD:238738"
     misc_feature    order(992..994,998..1000,1004..1006,1202..1204,1307..1309)
                     /gene="ITIH5"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238738"
     misc_feature    2231..2803
                     /gene="ITIH5"
                     /note="Inter-alpha-trypsin inhibitor heavy chain
                     C-terminus; Region: ITI_HC_C; pfam06668"
                     /db_xref="CDD:461981"
ORIGIN      
        1 agccgcgagc ccagcgctgc acctcgcgct gtaccccgcg ctgtaccccg cacgtcccgc
       61 cgcgtcccag tgccaccgcc ccggccccgc catgctcccg ctgctcgggc tgtgcttggc
      121 cctgccgttc tgcgcggggt cgttggaaga ggtgcagagc tggggggaca cttcggagca
      181 agttgcactc agggtcccaa ggcaagtcag gctgttgcaa aggctgaaaa ccaaaccctt
      241 gatgacagaa ttctcagtga agtccaccat catttcccgt tacgccttca ctacggttgc
      301 ctgcaggtta ctgaacagag catctgagga ccaggaaatc acgtttcaga tgcagattcc
      361 agccgcagct ttcatcacta acttcactat gcttattgga gacaaggtgt atcagggaga
      421 aattacagag aaagaaaaga aaaatggtga taaggtaaaa gagaaaagga ataaaaccac
      481 agaagtcagt ggggagaagg ggacggagac cttcagagcc tccgtggtgc ttcccagcaa
      541 ggacaaggct gccttcctcc tgagttacga ggagctcctg cagcggcggc tggggaagta
      601 cgagcacgtg gtcagcgtac ggccccagca gctggtgggg cggctgacgg tggaggtgac
      661 cattctggag aggtcgggca tcacggcgct ggaggtgctg ggactccaga acagccgtcg
      721 ccagggcagc gggcgggggc aagatgattc tgggccacct ccttctactg ttatcaacca
      781 aaacgaaact tttgccaaag tcgtttttaa acctactgtg gtccaacaag ccaagattgc
      841 ccagaatggc attttgggag atttcatcat tagatatgat gttaataggg aacagagcat
      901 tggggacatc caggttctaa atggctattt tgtgcactac tttgccccca aagaccttcc
      961 tccgttaccc aagaatgtgg tgtttgtgct tgacagcagt gcctccatgg tgggaaccaa
     1021 actgcggcag accaaagatg cccttttcac gattctgcat gacctccgac cccaggaccg
     1081 tttcaatatc attggatttt ccaaccgggt caaagtgtgg aaggaccatt tggtgtcagt
     1141 tactcccaac aatatcagag acggcaaagt ctacattcac cacatgtcac cgaccggagg
     1201 cacggatatt aacggggccc tgcagagggg catcaggctt ctcaacgact tcgtggccca
     1261 caacgacatc gaggatcgca gcgtgtccct ggtcatcttc ctgacagacg ggaagcccac
     1321 cgccggggag acccacaccc cgaagatcct caacaacacc agggaggccg ctcggggccg
     1381 ggtctgcatc ttcaccgtgg gcatcggggc cgatgtggac ttcaagctgc tggagatgct
     1441 gtccctggag aactgtgggc tcacacggca cgtccacgag gaccatgacg cccgcgccca
     1501 gctcatcggg ttctacgatg agatcaggac cccgctcctc tcggacatcc gcgtggatta
     1561 tccacccggc ttggtagagc atgccaccag gaccctgttc cccaactact tcaatggctc
     1621 tgagatcatc atcgcgggga agctggtgga caaggagatg gaccgcttgc acgtggaggt
     1681 cacggccagc aacagtaaga agtttgtcgt actcaagaag gacgtgcctg tggaaccccg
     1741 gaggatgggg aacgacgtcc cggggagccc caggcccaag gggggtggcc aggagcaccc
     1801 gaaccacctg gagcgtctct ggagctacct gaccctgaag gagctgctga gttcctggct
     1861 gcagagtgat gagcagcccg agagggagcg gctgaggcag gaggtacagg ctctggccat
     1921 gaaccatcac ttcctcgctc cgttcacctc catgacgctc aagtcagcac cgcggacaga
     1981 gaccccggag gacgcctacg gcacgtcggc ggccacaggg cccgaaacgg tgatgcagag
     2041 cctgaggggc gcccacctgc agccaggacc tgctctcaag aaaccataca acccaaggat
     2101 taaagtctcc aaaacctcag cggatggaga cccccatttt gttgtggatt tccccttgag
     2161 caacctcacg gtctgtttca acatcgatgg acagcctggg cacatcctga ggctggtctc
     2221 tgatcatgct gactctggtg tgacggtgaa cggagagttg atcggggccc ctgctccccc
     2281 aaacggccac aagaaacagc gcacttactt ccgcaccatc accatcctcg tcaacaagcc
     2341 cgagaggtcc tacctggaga tcacgcccac cagagtcatc gtggatggtg gggacaggct
     2401 ggtcctcccc tgcaaccaga gcgcggccgt ggggagccag gggctggagg tgtcggtgtc
     2461 cgccaatgcc aaggtcacca tcgccatcca gggcaacgtg gccttcgtca tcctcctcca
     2521 cctctacaaa aagccagccc cctaccagcg aaaccacctg ggcttctacg tcgccaatgg
     2581 ccaaggcctt tctggcaact gccatggcct gttaggtcag ttcctgaacc aggaggccag
     2641 actcaccggg ctcggcaaga gccctgccca tccttccgtc cctgagacag gtgagaggtc
     2701 tgaggccgtc cttgaggtaa aaggacacca ggtcccagtg gtgtggaagc agaggaaaat
     2761 ctacaacggg gaagagcagg tggactgctg gtttgcccgg aacaacgccg ccaacctgat
     2821 tgacggggag tataaagact acctggcggc ccatcctttt gactccgaga ccacctttgg
     2881 cccaggcaca tcccggggac tctgacacca gcagccgtaa ggcaagagcg tgtgacaggg
     2941 aaacgtcttc ggggaccccg tggtgtggtt cttgtcgctt ggcaggtagc cgccgcccag
     3001 gactcacccc tggtggcggg gaggtctaac ctctgcttga ggaaagggtg gggtcaggac
     3061 gttgaagcaa gaatgggatt tcctgctctt cccctccccc tcccccatct ctagtagaga
     3121 acagtggtgg caccaaaggg accagtcaca gttaaaagca aatctctatc ttataccagc
     3181 tggcttgtcc atctcactgc ctaccacaag gtgactctga tgaaggaagg tggccatcag
     3241 gtctgttttc tctgtggaaa tggccaggct tgggcactct gctttttgcc ttactaatgc
     3301 ataggcatct ctcctcctag cccgctgtgt tctccggatg tgcggccaag ctctgcctca
     3361 ggggaacctc tccttgggcc caggccacga gtcatgaaat agcatgtaga tttgatcact
     3421 gtacaccatt cggtcttttc ttaggagagg attttcttct actgtgatgt cttgcccttg
     3481 aaattttgtt ttcgtttttt aaaaattgac tcaaaataga aactctgcat cccagatacc
     3541 ggtatttttc taacgggctt tgtagatcac ttaactttgc tgttggagat tctcctattt
     3601 attccagaaa gctgagcgct tctaataaac agggcagccc acgtgggcgt atttcactgg
     3661 cctgtctcag tgctggagcg tcggccagcc gcgtgatgaa tctttcactc ggcccttcag
     3721 ccttggtcct gattccgacc tgatttgctc tcggtcccgc aggaggtgat aaattaggct
     3781 cttgcagaac tgggatgggg aggtattggc agcacagagc cgacctacag gaaccaaact
     3841 gcatgttccc agcaggaagt gcggacatgc tcacagatct aaggagctct cccgcatccc
     3901 agacatgtga ggccaggaag tcagcgtgag aaagaggctt tggacaaatc tgattccata
     3961 agggaggggt taaaatcagg ggtcagggtg gtgtcaaaag tcaatgactg tcactcctca
     4021 ttgtggaacc tgtgaagccc gtcacattat caaggggaag ggaggttgat ggtggtcttg
     4081 agacctcctc tctccccctc cttcccggct ttttgctgga ccacggaggg tcagtaagcc
     4141 tgaccctcac tgcggtcagg acgcagatgg acacgggggg cactggagcc gaacagcagg
     4201 gaaaggaagg tttggatcag agacatggaa tattttgacg tgagaccgaa tgaaataaaa
     4261 gctcttgtgc cggc
//
LOCUS       XM_032617542            4108 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus inter-alpha-trypsin inhibitor heavy chain
            5 (ITIH5), transcript variant X2, mRNA.
ACCESSION   XM_032617542
VERSION     XM_032617542.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4108
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4108
                     /gene="ITIH5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746230"
     CDS             76..2739
                     /gene="ITIH5"
                     /codon_start=1
                     /product="inter-alpha-trypsin inhibitor heavy chain H5
                     isoform X2"
                     /protein_id="XP_032473433.1"
                     /db_xref="GeneID:116746230"
                     /translation="MTEFSVKSTIISRYAFTTVACRLLNRASEDQEITFQMQIPAAAF
                     ITNFTMLIGDKVYQGEITEKEKKNGDKVKEKRNKTTEVSGEKGTETFRASVVLPSKDK
                     AAFLLSYEELLQRRLGKYEHVVSVRPQQLVGRLTVEVTILERSGITALEVLGLQNSRR
                     QGSGRGQDDSGPPPSTVINQNETFAKVVFKPTVVQQAKIAQNGILGDFIIRYDVNREQ
                     SIGDIQVLNGYFVHYFAPKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLR
                     PQDRFNIIGFSNRVKVWKDHLVSVTPNNIRDGKVYIHHMSPTGGTDINGALQRGIRLL
                     NDFVAHNDIEDRSVSLVIFLTDGKPTAGETHTPKILNNTREAARGRVCIFTVGIGADV
                     DFKLLEMLSLENCGLTRHVHEDHDARAQLIGFYDEIRTPLLSDIRVDYPPGLVEHATR
                     TLFPNYFNGSEIIIAGKLVDKEMDRLHVEVTASNSKKFVVLKKDVPVEPRRMGNDVPG
                     SPRPKGGGQEHPNHLERLWSYLTLKELLSSWLQSDEQPERERLRQEVQALAMNHHFLA
                     PFTSMTLKSAPRTETPEDAYGTSAATGPETVMQSLRGAHLQPGPALKKPYNPRIKVSK
                     TSADGDPHFVVDFPLSNLTVCFNIDGQPGHILRLVSDHADSGVTVNGELIGAPAPPNG
                     HKKQRTYFRTITILVNKPERSYLEITPTRVIVDGGDRLVLPCNQSAAVGSQGLEVSVS
                     ANAKVTIAIQGNVAFVILLHLYKKPAPYQRNHLGFYVANGQGLSGNCHGLLGQFLNQE
                     ARLTGLGKSPAHPSVPETGERSEAVLEVKGHQVPVVWKQRKIYNGEEQVDCWFARNNA
                     ANLIDGEYKDYLAAHPFDSETTFGPGTSRGL"
     misc_feature    76..402
                     /gene="ITIH5"
                     /note="Vault protein inter-alpha-trypsin domain; Region:
                     VIT; pfam08487"
                     /db_xref="CDD:462492"
     misc_feature    799..1344
                     /gene="ITIH5"
                     /note="vWA_interalpha trypsin inhibitor (ITI): ITI is a
                     glycoprotein composed of three polypeptides- two heavy
                     chains and one light chain (bikunin). Bikunin confers the
                     protease-inhibitor function while the heavy chains are
                     involved in rendering stability to...; Region:
                     vWA_interalpha_trypsin_inhibitor; cd01461"
                     /db_xref="CDD:238738"
     misc_feature    order(826..828,832..834,838..840,1036..1038,1141..1143)
                     /gene="ITIH5"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238738"
     misc_feature    2065..2637
                     /gene="ITIH5"
                     /note="Inter-alpha-trypsin inhibitor heavy chain
                     C-terminus; Region: ITI_HC_C; pfam06668"
                     /db_xref="CDD:461981"
ORIGIN      
        1 tgtaagaacc ctcaggttgc actcagggtc ccaaggcaag tcaggctgtt gcaaaggctg
       61 aaaaccaaac ccttgatgac agaattctca gtgaagtcca ccatcatttc ccgttacgcc
      121 ttcactacgg ttgcctgcag gttactgaac agagcatctg aggaccagga aatcacgttt
      181 cagatgcaga ttccagccgc agctttcatc actaacttca ctatgcttat tggagacaag
      241 gtgtatcagg gagaaattac agagaaagaa aagaaaaatg gtgataaggt aaaagagaaa
      301 aggaataaaa ccacagaagt cagtggggag aaggggacgg agaccttcag agcctccgtg
      361 gtgcttccca gcaaggacaa ggctgccttc ctcctgagtt acgaggagct cctgcagcgg
      421 cggctgggga agtacgagca cgtggtcagc gtacggcccc agcagctggt ggggcggctg
      481 acggtggagg tgaccattct ggagaggtcg ggcatcacgg cgctggaggt gctgggactc
      541 cagaacagcc gtcgccaggg cagcgggcgg gggcaagatg attctgggcc acctccttct
      601 actgttatca accaaaacga aacttttgcc aaagtcgttt ttaaacctac tgtggtccaa
      661 caagccaaga ttgcccagaa tggcattttg ggagatttca tcattagata tgatgttaat
      721 agggaacaga gcattgggga catccaggtt ctaaatggct attttgtgca ctactttgcc
      781 cccaaagacc ttcctccgtt acccaagaat gtggtgtttg tgcttgacag cagtgcctcc
      841 atggtgggaa ccaaactgcg gcagaccaaa gatgcccttt tcacgattct gcatgacctc
      901 cgaccccagg accgtttcaa tatcattgga ttttccaacc gggtcaaagt gtggaaggac
      961 catttggtgt cagttactcc caacaatatc agagacggca aagtctacat tcaccacatg
     1021 tcaccgaccg gaggcacgga tattaacggg gccctgcaga ggggcatcag gcttctcaac
     1081 gacttcgtgg cccacaacga catcgaggat cgcagcgtgt ccctggtcat cttcctgaca
     1141 gacgggaagc ccaccgccgg ggagacccac accccgaaga tcctcaacaa caccagggag
     1201 gccgctcggg gccgggtctg catcttcacc gtgggcatcg gggccgatgt ggacttcaag
     1261 ctgctggaga tgctgtccct ggagaactgt gggctcacac ggcacgtcca cgaggaccat
     1321 gacgcccgcg cccagctcat cgggttctac gatgagatca ggaccccgct cctctcggac
     1381 atccgcgtgg attatccacc cggcttggta gagcatgcca ccaggaccct gttccccaac
     1441 tacttcaatg gctctgagat catcatcgcg gggaagctgg tggacaagga gatggaccgc
     1501 ttgcacgtgg aggtcacggc cagcaacagt aagaagtttg tcgtactcaa gaaggacgtg
     1561 cctgtggaac cccggaggat ggggaacgac gtcccgggga gccccaggcc caaggggggt
     1621 ggccaggagc acccgaacca cctggagcgt ctctggagct acctgaccct gaaggagctg
     1681 ctgagttcct ggctgcagag tgatgagcag cccgagaggg agcggctgag gcaggaggta
     1741 caggctctgg ccatgaacca tcacttcctc gctccgttca cctccatgac gctcaagtca
     1801 gcaccgcgga cagagacccc ggaggacgcc tacggcacgt cggcggccac agggcccgaa
     1861 acggtgatgc agagcctgag gggcgcccac ctgcagccag gacctgctct caagaaacca
     1921 tacaacccaa ggattaaagt ctccaaaacc tcagcggatg gagaccccca ttttgttgtg
     1981 gatttcccct tgagcaacct cacggtctgt ttcaacatcg atggacagcc tgggcacatc
     2041 ctgaggctgg tctctgatca tgctgactct ggtgtgacgg tgaacggaga gttgatcggg
     2101 gcccctgctc ccccaaacgg ccacaagaaa cagcgcactt acttccgcac catcaccatc
     2161 ctcgtcaaca agcccgagag gtcctacctg gagatcacgc ccaccagagt catcgtggat
     2221 ggtggggaca ggctggtcct cccctgcaac cagagcgcgg ccgtggggag ccaggggctg
     2281 gaggtgtcgg tgtccgccaa tgccaaggtc accatcgcca tccagggcaa cgtggccttc
     2341 gtcatcctcc tccacctcta caaaaagcca gccccctacc agcgaaacca cctgggcttc
     2401 tacgtcgcca atggccaagg cctttctggc aactgccatg gcctgttagg tcagttcctg
     2461 aaccaggagg ccagactcac cgggctcggc aagagccctg cccatccttc cgtccctgag
     2521 acaggtgaga ggtctgaggc cgtccttgag gtaaaaggac accaggtccc agtggtgtgg
     2581 aagcagagga aaatctacaa cggggaagag caggtggact gctggtttgc ccggaacaac
     2641 gccgccaacc tgattgacgg ggagtataaa gactacctgg cggcccatcc ttttgactcc
     2701 gagaccacct ttggcccagg cacatcccgg ggactctgac accagcagcc gtaaggcaag
     2761 agcgtgtgac agggaaacgt cttcggggac cccgtggtgt ggttcttgtc gcttggcagg
     2821 tagccgccgc ccaggactca cccctggtgg cggggaggtc taacctctgc ttgaggaaag
     2881 ggtggggtca ggacgttgaa gcaagaatgg gatttcctgc tcttcccctc cccctccccc
     2941 atctctagta gagaacagtg gtggcaccaa agggaccagt cacagttaaa agcaaatctc
     3001 tatcttatac cagctggctt gtccatctca ctgcctacca caaggtgact ctgatgaagg
     3061 aaggtggcca tcaggtctgt tttctctgtg gaaatggcca ggcttgggca ctctgctttt
     3121 tgccttacta atgcataggc atctctcctc ctagcccgct gtgttctccg gatgtgcggc
     3181 caagctctgc ctcaggggaa cctctccttg ggcccaggcc acgagtcatg aaatagcatg
     3241 tagatttgat cactgtacac cattcggtct tttcttagga gaggattttc ttctactgtg
     3301 atgtcttgcc cttgaaattt tgttttcgtt ttttaaaaat tgactcaaaa tagaaactct
     3361 gcatcccaga taccggtatt tttctaacgg gctttgtaga tcacttaact ttgctgttgg
     3421 agattctcct atttattcca gaaagctgag cgcttctaat aaacagggca gcccacgtgg
     3481 gcgtatttca ctggcctgtc tcagtgctgg agcgtcggcc agccgcgtga tgaatctttc
     3541 actcggccct tcagccttgg tcctgattcc gacctgattt gctctcggtc ccgcaggagg
     3601 tgataaatta ggctcttgca gaactgggat ggggaggtat tggcagcaca gagccgacct
     3661 acaggaacca aactgcatgt tcccagcagg aagtgcggac atgctcacag atctaaggag
     3721 ctctcccgca tcccagacat gtgaggccag gaagtcagcg tgagaaagag gctttggaca
     3781 aatctgattc cataagggag gggttaaaat caggggtcag ggtggtgtca aaagtcaatg
     3841 actgtcactc ctcattgtgg aacctgtgaa gcccgtcaca ttatcaaggg gaagggaggt
     3901 tgatggtggt cttgagacct cctctctccc cctccttccc ggctttttgc tggaccacgg
     3961 agggtcagta agcctgaccc tcactgcggt caggacgcag atggacacgg ggggcactgg
     4021 agccgaacag cagggaaagg aaggtttgga tcagagacat ggaatatttt gacgtgagac
     4081 cgaatgaaat aaaagctctt gtgccggc
//
LOCUS       XM_032617554            1567 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus kinetochore localized astrin (SPAG5)
            binding protein (KNSTRN), mRNA.
ACCESSION   XM_032617554
VERSION     XM_032617554.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                VOSU01000015.1     93699157-93699231   c
            76-76               "N"                1-1
            77-209              VOSU01000015.1     93699024-93699156   c
            210-304             VOSU01000015.1     93698766-93698860   c
            305-434             VOSU01000015.1     93695388-93695517   c
            435-482             VOSU01000015.1     93694480-93694527   c
            483-588             VOSU01000015.1     93692056-93692161   c
            589-682             VOSU01000015.1     93691799-93691892   c
            683-738             VOSU01000015.1     93690716-93690771   c
            739-813             VOSU01000015.1     93689871-93689945   c
            814-1567            VOSU01000015.1     93688188-93688941   c
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1567
                     /gene="KNSTRN"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 mRNAs, 1 long SRA read, 9 Proteins, and
                     92% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746240"
     CDS             1..945
                     /gene="KNSTRN"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: small
                     kinetochore-associated protein"
                     /protein_id="XP_032473445.1"
                     /db_xref="GeneID:116746240"
                     /translation="MAAPEGVAHGSTFRTTWPPTESAPQXLPPGHRKFPFETQAADPV
                     CGTAVIAEHLSNQSDGACGQEQQASGPQPCRLVTMTSVVKTVHTLQPPSVLSSGLSAD
                     AQTRATSKSLLPVRSKEVDVSRPHLGDSENDVTKIIKPRRDNGQLRATDTATRRNIRK
                     SYKPLSKEKSEEELKDKNQLLEAVNKQLHQKLIETQGELKDLTQKVELLEKFQDSCLA
                     ILESKGLNPGSETLAARQDSTTDHMDSMLLLETLQDELKLFNETAKKQMEELQALKVK
                     LKIKEEERAQFLEQQTLCNSQVNDFTTALEEMEQLLEM"
     misc_feature    <514..>939
                     /gene="KNSTRN"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]; Region:
                     COG4913"
                     /db_xref="CDD:443941"
ORIGIN      
        1 atggcagccc ccgaaggcgt cgcccacggc agtacattcc gtacaacatg gccgcctaca
       61 gagagcgcac cgcagnccct cccgcccggc caccggaagt ttccgtttga aacccaggcg
      121 gcagacccgg tctgcggtac ggcagttatt gccgagcatc tttcgaacca gagcgacggg
      181 gcctgcgggc aggagcagca ggcgtctggg ccccagccgt gccgcctcgt tacgatgacc
      241 agcgtggtca agacagtgca caccctgcag cccccctctg tgctgagcag cggcctgtcc
      301 gcagatgcac aaactcgagc cacttctaag agcctgttac ctgttaggtc caaagaagtc
      361 gatgtttccc gacctcactt aggagattca gaaaatgatg ttacaaaaat catcaaacca
      421 agacgagaca atgggcagct gagagctaca gacactgcca ccaggaggaa catcaggaag
      481 agctataagc cactgagtaa agagaaatca gaggaagagc tcaaggataa gaaccagctc
      541 ttagaggccg tcaacaagca gttgcaccag aagttgattg aaactcaggg agagctgaag
      601 gacttgaccc aaaaagtgga gctgctggag aagtttcagg acagctgtct ggcaattttg
      661 gagagcaagg gcctcaaccc aggcagtgag accctggcgg cacggcagga ctccaccacg
      721 gatcacatgg actcgatgct gctgttagaa actttgcaag atgagctgaa gctttttaac
      781 gaaacagcca aaaagcagat ggaggagtta caggccttaa aggtaaagtt gaagataaaa
      841 gaagaagaga gggcccagtt cctagaacaa cagaccttat gtaacagtca agtaaatgat
      901 tttacaacag cccttgagga aatggagcag ctattagaaa tgtgataaaa agcaggtggc
      961 cacatggctc cctcttgggg ataaactctc agaggaagcc acttaagaca tctgcttctt
     1021 ggccatgatc ttctaggact caccatcccc agaatgaaaa cagtttctgc agttcatgct
     1081 ggaatggcaa ttcctccttt aaacaagcat tcccagcctt cacattggcc agctctcctg
     1141 aacctcacaa tacgtaattg aggcctacaa gagagggggc ctgaaagctt ggatcaacct
     1201 cctaggcaac agagcggcac agaattagta tcaggagact aaaccagcca cagccagaga
     1261 agccaaaagg tcacattcag acgtgtggga agaaacagtg gtgcacaggt gcttcacggg
     1321 agacatcact gaggagccct gcggtcccct cataacttgg aacgcattct gtcccatcct
     1381 ggttgggctc tataacctca ctgtaaattt acaaactgga agttacctga aatggtttaa
     1441 taaatggggt gaaggtatag atggcaataa cacctatgaa acaatacacc ttggagcttt
     1501 taatctaaat cagttctgtt tttgttttta taaagtgtta cttttaaaat aaatatttct
     1561 gtaacta
//
LOCUS       XM_032617567             480 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ribonuclease 7-like (LOC116746248), mRNA.
ACCESSION   XM_032617567
VERSION     XM_032617567.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-396               VOSU01000015.1     101645942-101646337
            397-480             VOSU01000015.1     101646339-101646422
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..480
                     /gene="LOC116746248"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins"
                     /db_xref="GeneID:116746248"
     CDS             7..480
                     /gene="LOC116746248"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:139..141,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: ribonuclease 7-like"
                     /protein_id="XP_032473458.1"
                     /db_xref="GeneID:116746248"
                     /translation="MAPARAGFCPLLLFLLLGLWMADNPVGAKPRNMTSARWFETQLV
                     XPRPQRCNTATQNINKYSNRCKGLDTFVRESVSGVAATCQTPSIACKRGRKDCHRSQK
                     PVSLTMCNLTSGRYPDCRYKEKQLNAPYSIVACDPPQKGDSRKFKLVPVHLDDVL"
     misc_feature    106..468
                     /gene="LOC116746248"
                     /note="Pancreatic ribonuclease; Region: RnaseA; pfam00074"
                     /db_xref="CDD:459661"
     misc_feature    order(121..150,154..156,166..168,172..180,202..204,
                     211..228,325..327,379..381,454..456)
                     /gene="LOC116746248"
                     /note="dimerization with domain swap [active]"
                     /db_xref="CDD:119387"
     misc_feature    order(133..135,202..204,214..216,292..294,328..330,
                     460..465)
                     /gene="LOC116746248"
                     /note="catalytic site [active]"
                     /db_xref="CDD:119387"
     misc_feature    order(205..207,301..303,334..336,376..378,382..384,
                     388..393,400..402)
                     /gene="LOC116746248"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:119387"
ORIGIN      
        1 agagagatgg caccagccag agcaggattc tgccctctgc tgctgttcct gctgctgggc
       61 ctgtggatgg ccgacaaccc agtcggtgcc aagcccagaa acatgacctc agctcggtgg
      121 tttgaaactc agctcgtgta gcccaggcct cagagatgca acacggcgac acaaaacatc
      181 aacaagtact ccaatcgctg caaaggcctc gacaccttcg tgcgtgaatc cgtctccggt
      241 gtggccgcca cttgtcagac gcccagcata gcctgcaaga gaggccgtaa agactgccac
      301 cggagccaga agcctgtatc cctgaccatg tgtaacctca cctcagggag gtacccagac
      361 tgcaggtaca aggagaagca actgaatgct ccttactcca tcgtggcctg tgaccctccc
      421 cagaaagggg actctaggaa attcaagctg gttcctgtcc acctggacga tgtcctttag
//
LOCUS       XR_004347658             969 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746260
            (LOC116746260), transcript variant X1, ncRNA.
ACCESSION   XR_004347658
VERSION     XR_004347658.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..969
                     /gene="LOC116746260"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746260"
     ncRNA           1..969
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746260"
                     /product="uncharacterized LOC116746260, transcript variant
                     X1"
                     /db_xref="GeneID:116746260"
ORIGIN      
        1 agagcaacct ggggccatcc gtataatccg tgcttcccgg tgaagtgagg aggaggagtc
       61 tcgcaagggt gttggggtgc attccacgag gatcctgatt taacccttgt tgcgcccaga
      121 tcaggtggaa taccaaggaa ggagtaccag cagcagagca gcctggggcc atccatataa
      181 ttcgtgatga cgggtgaagt gaggagaagg agtcttgcag gggtgttggc gcacattccg
      241 tgaggatcct ggtttaaacc ttgttgcgcc aggtggaatg ccaagaaagg aattccagca
      301 ggagagcaac ctggggccat ccgtataatc cgtgcttccc ggtgaagtga ggaggaggag
      361 tctcgcaagg gtgttggggt gcattccacg aggatcctga tttaaccctt gttgcgccca
      421 gatcaggtgg aataccaagg aaggagtacc agcagcagag cagcctgggg ccatccatat
      481 aattcgtgat gacgggtgaa gtgaggagaa ggagtcttgc aggggtgttg gcgcacattc
      541 cgtgaggatc ctggtttaaa ccttgttgcg ttcaacttag aatcagcact tgttttttta
      601 tgaaaaaact aatttttttc accttgagaa gtgaaatgat ggagaatatc atgactaaat
      661 ctgccatcca aacctcacag tccagtggga attctcacac tgcatggatc aagtactgtg
      721 tttcatatga aagagaggtg acataaagga caggattcag aataagtctg cctttccatc
      781 cttaaggtcc attctcaaac tgattggaag cgatgttgaa tgttgaaggt acattttatt
      841 gcttggaatt ctcaccacta caccaaggaa ctgctgtttt tgtaacagct ttctcacctg
      901 ggaatggcaa aaacaatgta ttccagagat aacaacccaa ttttcaataa gttttttgca
      961 ggattattt
//
LOCUS       XR_004347659             965 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746260
            (LOC116746260), transcript variant X2, ncRNA.
ACCESSION   XR_004347659
VERSION     XR_004347659.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..965
                     /gene="LOC116746260"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746260"
     ncRNA           1..965
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746260"
                     /product="uncharacterized LOC116746260, transcript variant
                     X2"
                     /db_xref="GeneID:116746260"
ORIGIN      
        1 agagcaacct ggggccatcc gtataatccg tgcttcccgg tgaagtgagg aggaggagtc
       61 tcgcaagggt gttggggtgc attccacgag gatcctgatt taacccttgt tgcgcccaga
      121 tcaggtggaa taccaaggaa ggagtaccag cagcagagca gcctggggcc atccatataa
      181 ttcgtgatga cgggtgaagt gaggagaagg agtcttgcag gggtgttggc gcacattccg
      241 tgaggatcct ggtttaaacc ttgttgcggt ggaatgccaa gaaaggaatt ccagcaggag
      301 agcaacctgg ggccatccgt ataatccgtg cttcccggtg aagtgaggag gaggagtctc
      361 gcaagggtgt tggggtgcat tccacgagga tcctgattta acccttgttg cgcccagatc
      421 aggtggaata ccaaggaagg agtaccagca gcagagcagc ctggggccat ccatataatt
      481 cgtgatgacg ggtgaagtga ggagaaggag tcttgcaggg gtgttggcgc acattccgtg
      541 aggatcctgg tttaaacctt gttgcgttca acttagaatc agcacttgtt tttttatgaa
      601 aaaactaatt tttttcacct tgagaagtga aatgatggag aatatcatga ctaaatctgc
      661 catccaaacc tcacagtcca gtgggaattc tcacactgca tggatcaagt actgtgtttc
      721 atatgaaaga gaggtgacat aaaggacagg attcagaata agtctgcctt tccatcctta
      781 aggtccattc tcaaactgat tggaagcgat gttgaatgtt gaaggtacat tttattgctt
      841 ggaattctca ccactacacc aaggaactgc tgtttttgta acagctttct cacctgggaa
      901 tggcaaaaac aatgtattcc agagataaca acccaatttt caataagttt tttgcaggat
      961 tattt
//
LOCUS       XR_004347661            5303 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746268
            (LOC116746268), transcript variant X1, ncRNA.
ACCESSION   XR_004347661
VERSION     XR_004347661.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5303
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5303
                     /gene="LOC116746268"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746268"
     ncRNA           1..5303
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746268"
                     /product="uncharacterized LOC116746268, transcript variant
                     X1"
                     /db_xref="GeneID:116746268"
ORIGIN      
        1 ctaggtttca tatggacgag tttcttccta ctccttgata tgtgccatga aggaaaatat
       61 taggaataat tctgccttcc atcctcaagg gccagtggga attctaatgt actttttcct
      121 gaaaatactc catcccaggg agacggagtc ctgagagctc agtgtctgcc acatatctaa
      181 ggatcaaggt ctctttcaca aatgtgcctg gatcgatgat gacttcaaaa atggatattg
      241 ttggaatctg aacaaaatta gtgacaaaat cactgatgtg aactgaggtc cagcagaaga
      301 gaccatgcta ggcaaaaatg ttggggtaga gctcagtttg gtcagctagt ggtacctata
      361 gggtccatag taattgaatg ctatcctgat tgcatacatt aaaggaattg aatttcacag
      421 aggtctataa atatctgact tagggatgac atggcaactc tgaatgcttg gctggcagtt
      481 tccatgcatt cacagtaacc agatcctgga gaaccagcac aggagtagag aggctggtgg
      541 taaatggtta tgtctaccat gaactattca cgcatttttc ttaggtgcct aagtcttcag
      601 agtgaagtca attaggtatt caaggcagaa tatatgagtg tttatttatc tcttaaagta
      661 aaagaaaaac atagaaattg aagagcagtt tctatttgtc aaaatgtctt ccagaacatt
      721 ttaatttcct tgctgaccaa gtcacaagta ttagaagagt ttttttccct gtcacccaaa
      781 gaggaatttt ctagacgttt atgttatgga tccaaataga tgctgtatta aacatattta
      841 attaaaaatt attacatttc caattattta tattttaggt agatttcatt gcccagtatt
      901 catattgtgt tagtgggttt catagtgttg aaggggagat cctagtatta atgcctgctg
      961 ctgagggaag gctttgggga aactttgaga ccaaggcctt acaactttca gtgttaccct
     1021 gatccaagta gtgagcatta tttttcttct tatacagata gtcaagggaa tatctatagt
     1081 ttattcctta taatctgtta ttagttagta aactttcaat tatgatggtt tggtttgtca
     1141 aattccctaa tttcccaata tattcggtag attagaggtg atattgaagt tggatggaat
     1201 tcctcccact tctttaagga gctgctgatt ttgtcattca taccagctcc ctgctgcata
     1261 aataatcaca acaatgcact ccagaggtaa cattgcaact tttaataaat gtattttcct
     1321 gggttagtat gtgtttttag cgagcaagat tacagatggt cttttggagt ctgttaatct
     1381 gaacatgtga ggcttttagt agtctgggtc atctgaggtt tctgtgtact tttttcccag
     1441 gattttaatg cttcctccat tttgaataac atcagaagat cctactaggg aaatagtatt
     1501 tttgtatact tgtgcatagt aaacatcttg tgttctgcgt gtttaacagg tggacacata
     1561 tacttctcat ctttccataa ttttactcta tgccagcata tcgacatgga ccaagaactc
     1621 agttttgtat aaaagtgtgg gccactgtca cagggagatg gagtcctgag agctcagtgt
     1681 ctgccacata tctcaggatc aaggtctctt tcacaaatgg gcctggattg atgatgactt
     1741 caaaaatgga tctcgttgga atctgaacaa aatgagtgac aaaatcactt atgtgaactg
     1801 agatccagca taagagacca ctttaggcaa aaatgtagag gattcagttt ggtcagctag
     1861 tagtatcccc cataaaagga ctatgatatt agaaaactaa gatgctggtg tatgctacag
     1921 gaaatgaatt gtacagaaat tataaataac cattgtggaa tgacaactct gagtgcttga
     1981 caggcagtat ctttacaccc atagtaaaca aacagtggag aatcagcaca tgaaatagtt
     2041 gtgcttacac taggacattc tcacagtttc cttagatgtt gcagtctttt gtgaagatca
     2101 gcgtgtttag gtctattaga tagccaatta gaaagaaatt attagttttt gcttgtcatt
     2161 tatctcttaa gtgaaagaaa tatgggaaaa tagaagagtt gattgcatta gtgaggttat
     2221 gttttaattt gcttgctaac ctatcaattc aaagagtaga atatgttttt ttctttttct
     2281 tgtcactcag ggagaaattt cctagatatt tgatgatgga ttaaatttag atatttcatt
     2341 aaacattttt aacatgaaat gattaaattt ctaattcttg gaattttatg tggatatcat
     2401 cagcgaatat tcatattcct tcaatgggtt tatatgttta aagagatgtt ctaattttag
     2461 taagtaatag ggggaatttt gggtcaactt tgagatgaat gtcttagaaa aattgatttt
     2521 ctattctacc cttttccaag gaacaaacat aattttttct cattatatag atggtcaagt
     2581 gaatatctgt ggttaattcc ttattacttt ttatcaattg acattcaatt gggaaggttt
     2641 tatttcacaa cttcctttat ttcctctgtg ctgtgaaaga tggaagtgac tttggaattg
     2701 catggaatac tcaccaccat aaaaaagtgc tgattttgtt gctttcacct gttccctctc
     2761 ctgggatgga acaaaataat gaactccaaa gttccacaga tatggaccat tggttgagtt
     2821 taatatgaaa gagtttatcc ctcttcttga gaggtgacat gaaggaaagt attgaaaata
     2881 attttaccat ctcatcctca agagccagtg ggaattgtaa catcagttgg aagtaatatt
     2941 ggaattacat ggaattctta ccaccccacc aaacaagagc tggttttgtc acttctgcca
     3001 gctccttatc taagaagaaa tccaatgatg cactctcaag aatttttgca ttttctcagt
     3061 cttcccacta atgcctcata caggaattaa gcatggagat gaaagtaaag ccattcctta
     3121 ccagtgtggc agagaaaaac tgtttctact gaggggtgtg cttggccaaa tgtcactgaa
     3181 tcctcagcag tgtggcctga tgagcaccac cctgacaata ggatgggaaa tatttcatgg
     3241 gtaacaagga tagagctcag gtttcctatg aaaatgttta ttccttctcc ttgagatgca
     3301 acatgaagga aaggcccatc ctaagaggcc agtgggaatt ctcaagttga cgtgttccaa
     3361 aaactgggtt tcataaggat gagtttatcc cttccccgtg agatgagaca tgaacgaaag
     3421 tgttgggaat aattctgctt cccatcatca aaggtctgtg tgaattctca caaaggtgat
     3481 agagcctaga aggaaaggga aactgtctat gctttttcct taacttttga atgtcagttc
     3541 tagagaagga ggtgacaact tacttctcag ccagtgctct ctcttcctac ctgtggtcct
     3601 ttggacaccc tcgcagaaga tgacttcttg ggaactcttt tgggaatgaa tgataccagt
     3661 aaatccctga agcaagattc ttcagacaga gcctattcac ttacctgttg tccaagggct
     3721 accctctgaa ggtgatgacc acagagacga ggtggatttg ttactgtggg taccattact
     3781 tctaccatca gcttcttcaa aacaatgata cagtcttctt tgtgcatgga aactcttcta
     3841 tttcctgtgt tgcagtggat tcctcctgca gataagaaat gcttaactga gaaatgctca
     3901 tgttgggata tcatcgatga gactttaatt tgggcatggt gactgtttcc cttgcttcca
     3961 cttgactcaa tcccaggagc ctcagtagag gaaatattat tgcacaagaa actcagaatg
     4021 atggaattgc tcagtgctcc cataaataca catttataat tttcatttgc catgtggtaa
     4081 atttaaaaat taacatctat taaaattttt tcaaaaattc aaagcatatc taaatatcta
     4141 atatataaat taagtgccct cctttctccc aattctatcc cctagcgtta tcctctatta
     4201 agtgagttgt gtgcattctt taagtggata gatgcacaca cacacaaaca cacacacaca
     4261 aggtattttg gggggttctg gaagtggagc tatattgtac acattattct tcaaattgca
     4321 tttcatttaa cagttttttc aatacctttt tctgtttcag taatacatat ctgtgtcatt
     4381 tgttgaatga ctgcatgatt gttttgtaca tgaaatataa ttaaatgttt taagcatttc
     4441 tcattcatag atatttatgt tagcaccaaa tttctgtgca atgaacctcc ctatatatca
     4501 ataatttgca tttgtctatt atatcataat aaattactca gcagtgaaaa tactgggatt
     4561 aagtatatgc acatttcaaa ttttgaaaat gatcacaaga tttcctttaa aatgtggtaa
     4621 caactttatc ctcaaatggc aatgaatgag attgccagct ttcccacaac ctcacagata
     4681 atgaacttta tgactattta aaatctttgc cagtgtgata gcccaaacta ttgtcttaaa
     4741 ttgtatttct ttcatttttg agtatgatca ttttttcata tgtttattag ccatctgtat
     4801 ttttaaattt tctttttata tccaattttg gaggtgggtg gaggttttaa tctcttgcta
     4861 atttcagaga gctcatttat tattggggga ataagcttta gattgtcaag cattacagat
     4921 attttttaca cacttttaaa cttcattttt gttataagaa tgtgtatgac tgttatgtgt
     4981 ccaagtataa ccatgttcgc ttctatggtt tctgagtttc atgtcatttt agaaagatat
     5041 ttacactgat cccataaaac tctccaccta tgttaacttc taattatttt gtgtttttta
     5101 attcaaattc ttaaatcatg agaaagtttt tttatttcaa atcttaaagt taccaagtta
     5161 tttgccatta cttgcaattt atttgccaat aattgcccat ttatctgtaa tgccatcttg
     5221 catatatgct gtattctcat ctgtgactgg ctccattttt gttctgtggg tctgtgtgtc
     5281 tcttcttctg cctcctgtct cat
//
LOCUS       XR_004347662            5300 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746268
            (LOC116746268), transcript variant X2, ncRNA.
ACCESSION   XR_004347662
VERSION     XR_004347662.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5300
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5300
                     /gene="LOC116746268"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, and 92%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746268"
     ncRNA           1..5300
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746268"
                     /product="uncharacterized LOC116746268, transcript variant
                     X2"
                     /db_xref="GeneID:116746268"
ORIGIN      
        1 ctaggtttca tatggacgag tttcttccta ctccttgata tgtgccatga aggaaaatat
       61 taggaataat tctgccttcc atcctcaagg gccagtggga attctaatgt actttttcct
      121 gaaaatactc catcccaggg agacggagtc ctgagagctc agtgtctgcc acatatctaa
      181 ggatcaaggt ctctttcaca aatgtgcctg gatcgatgat gacttcaaaa atggatattg
      241 ttggaatctg aacaaaatta gtgacaaaat cactgatgtg aactgaggtc cagcagaaga
      301 gaccatgcta ggcaaaaatg ttggggtaga gctcagtttg gtcagctagt ggtacctata
      361 gggtccatag taattgaatg ctatcctgat tgcatacatt aaaggaattg aatttcacag
      421 aggtctataa atatctgact tagggatgac atggcaactc tgaatgcttg gctggcagtt
      481 tccatgcatt cacagtaacc agatcctgga gaaccagcac aggagtagag aggctggtgg
      541 taaatggtta tgtctaccat gaactattca cgcatttttc ttaggtgcct aagtcttcag
      601 agtgaagtca attaggtatt caaggcagaa tatatgagtg tttatttatc tcttaaagta
      661 aaagaaaaac atagaaattg aagagcagtt tctatttgtc aaaatgtctt ccagaacatt
      721 ttaatttcct tgctgaccaa gtcacaagta ttagaagagt ttttttccct gtcacccaaa
      781 gaggaatttt ctagacgttt atgttatgga tccaaataga tgctgtatta aacatattta
      841 attaaaaatt attacatttc caattattta tattttaggt agatttcatt gcccagtatt
      901 catattgtgt tagtgggttt catagtgttg aaggggagat cctagtatta atgcctgctg
      961 ctgagggaag gctttgggga aactttgaga ccaaggcctt acaactttca gtgttaccct
     1021 gatccaagta gtgagcatta tttttcttct tatacagata gtcaagggaa tatctatagt
     1081 ttattcctta taatctgtta ttagttagta aactttcaat tatgatggtt tggtttgtca
     1141 aattccctaa tttcccaata tattcggtag attagaggtg atattgaagt tggatggaat
     1201 tcctcccact tctttaagga gctgctgatt ttgtcattca taccagctcc ctgctgcata
     1261 aataatcaca acaatgcact ccagaggtaa cattgcaact tttaataaat gtattttcct
     1321 gggttagtat gtgtttttag cgagcaagat tacagatggt cttttggagt ctgttaatct
     1381 gaacatgtga ggcttttagt agtctgggtc atctgaggtt tctgtgtact tttttcccag
     1441 gattttaatg cttcctccat tttgaataac atcagaagat cctactaggg aaatagtatt
     1501 tttgtatact tgtgcatagt aaacatcttg tgttctgcgt gtttaacagg tggacacata
     1561 tacttctcat ctttccataa ttttactcta tgccagcata tcgacatgga ccaagaactc
     1621 agttttgtat aaaagtgtgg gccactgtca cagggagatg gagtcctgag agctcagtgt
     1681 ctgccacata tctcaggatc aaggtctctt tcacaaatgg gcctggattg atgatgactt
     1741 caaaaatgga tctcgttgga atctgaacaa aatgagtgac aaaatcactt atgtgaactg
     1801 agatccagca taagagacca ctttaggcaa aaatgtagag gattcagttt ggtcagctag
     1861 tagtatcccc cataaaagga ctatgatatt agaaaactaa gatgctggtg tatgctacag
     1921 gaaatgaatt gtacagaaat tataaataac cattgtggaa tgacaactct gagtgcttga
     1981 caggcagtat ctttacaccc atagtaaaca aacagtggag aatcagcaca tgaaatagtt
     2041 gtgcttacac taggacattc tcacagtttc cttagatgtt gcagtctttt gtgaagatca
     2101 gcgtgtttag gtctattaga tagccaatta gaaagaaatt attagttttt gcttgtcatt
     2161 tatctcttaa gtgaaagaaa tatgggaaaa tagaagagtt gattgcatta gtgaggttat
     2221 gttttaattt gcttgctaac ctatcaattc aaagagtaga atatgttttt ttctttttct
     2281 tgtcactcag ggagaaattt cctagatatt tgatgatgga ttaaatttag atatttcatt
     2341 aaacattttt aacatgaaat gattaaattt ctaattcttg gaattttatg tggatatcat
     2401 cagcgaatat tcatattcct tcaatgggtt tatatgttta aagagatgtt ctaattttag
     2461 taagtaatag ggggaatttt gggtcaactt tgagatgaat gtcttagaaa aattgatttt
     2521 ctattctacc cttttccaag gaacaaacat aattttttct cattatatag atggtcaagt
     2581 gaatatctgt ggttaattcc ttattacttt ttatcaattg acattcaatt gggaaggttt
     2641 tatttcacaa cttcctttat ttcctctgtg ctgtgaaaga tggaagtgac tttggaattg
     2701 catggaatac tcaccaccat aaaaaagtgc tgattttgtt gctttcacct gttccctctc
     2761 ctgggatgga acaaaataat gaactccaaa gttccacaga tatggaccat tggttgagtt
     2821 taatatgaaa gagtttatcc ctcttcttga gaggtgacat gaaggaaagt attgaaaata
     2881 attttaccat ctcatcctca agagccagtg ggaattgtaa catcagttgg aagtaatatt
     2941 ggaattacat ggaattctta ccaccccacc aaacaagagc tggttttgtc acttctgcca
     3001 gctccttatc taagaagaaa tccaatgatg cactctcaag aatttttgca ttttctcagt
     3061 cttcccacta atgcctcata caggaattaa gcatggagat gaaagtaaag ccattcctta
     3121 ccagtgtggc agagaaaaac tgtttctact gaggggtgtg cttggccaaa tgtcactgaa
     3181 tcctcagcag tgtggcctga tgagcaccac cctgacaata ggatgggaaa tatttcatgg
     3241 gtaacaagga tagagctcag gtttcctatg aaaatgttta ttccttctcc ttgagatgca
     3301 acatgaagga aaggcccatc ctaagaggcc agtgggaatt ctcaagttga cgtgttccaa
     3361 aaactgggtt tcataaggat gagtttatcc cttccccgtg agatgagaca tgaacgaaag
     3421 tgttgggaat aattctgctt cccatcatca aaggtctgtg tgaattctca caaaggtgat
     3481 agagcctaga aggaaaggga aactgtctat gctttttcct taacttttga atgtcagttc
     3541 tagagaagga ggtgacaact tacttctcag ccagtgctct ctcttcctac ctgtggtcct
     3601 ttggacaccc tcgcagatga cttcttggga actcttttgg gaatgaatga taccagtaaa
     3661 tccctgaagc aagattcttc agacagagcc tattcactta cctgttgtcc aagggctacc
     3721 ctctgaaggt gatgaccaca gagacgaggt ggatttgtta ctgtgggtac cattacttct
     3781 accatcagct tcttcaaaac aatgatacag tcttctttgt gcatggaaac tcttctattt
     3841 cctgtgttgc agtggattcc tcctgcagat aagaaatgct taactgagaa atgctcatgt
     3901 tgggatatca tcgatgagac tttaatttgg gcatggtgac tgtttccctt gcttccactt
     3961 gactcaatcc caggagcctc agtagaggaa atattattgc acaagaaact cagaatgatg
     4021 gaattgctca gtgctcccat aaatacacat ttataatttt catttgccat gtggtaaatt
     4081 taaaaattaa catctattaa aattttttca aaaattcaaa gcatatctaa atatctaata
     4141 tataaattaa gtgccctcct ttctcccaat tctatcccct agcgttatcc tctattaagt
     4201 gagttgtgtg cattctttaa gtggatagat gcacacacac acaaacacac acacacaagg
     4261 tattttgggg ggttctggaa gtggagctat attgtacaca ttattcttca aattgcattt
     4321 catttaacag ttttttcaat acctttttct gtttcagtaa tacatatctg tgtcatttgt
     4381 tgaatgactg catgattgtt ttgtacatga aatataatta aatgttttaa gcatttctca
     4441 ttcatagata tttatgttag caccaaattt ctgtgcaatg aacctcccta tatatcaata
     4501 atttgcattt gtctattata tcataataaa ttactcagca gtgaaaatac tgggattaag
     4561 tatatgcaca tttcaaattt tgaaaatgat cacaagattt cctttaaaat gtggtaacaa
     4621 ctttatcctc aaatggcaat gaatgagatt gccagctttc ccacaacctc acagataatg
     4681 aactttatga ctatttaaaa tctttgccag tgtgatagcc caaactattg tcttaaattg
     4741 tatttctttc atttttgagt atgatcattt tttcatatgt ttattagcca tctgtatttt
     4801 taaattttct ttttatatcc aattttggag gtgggtggag gttttaatct cttgctaatt
     4861 tcagagagct catttattat tgggggaata agctttagat tgtcaagcat tacagatatt
     4921 ttttacacac ttttaaactt catttttgtt ataagaatgt gtatgactgt tatgtgtcca
     4981 agtataacca tgttcgcttc tatggtttct gagtttcatg tcattttaga aagatattta
     5041 cactgatccc ataaaactct ccacctatgt taacttctaa ttattttgtg ttttttaatt
     5101 caaattctta aatcatgaga aagttttttt atttcaaatc ttaaagttac caagttattt
     5161 gccattactt gcaatttatt tgccaataat tgcccattta tctgtaatgc catcttgcat
     5221 atatgctgta ttctcatctg tgactggctc catttttgtt ctgtgggtct gtgtgtctct
     5281 tcttctgcct cctgtctcat
//
LOCUS       XR_004347663            1050 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746273
            (LOC116746273), transcript variant X1, ncRNA.
ACCESSION   XR_004347663
VERSION     XR_004347663.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1050
                     /gene="LOC116746273"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746273"
     ncRNA           1..1050
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746273"
                     /product="uncharacterized LOC116746273, transcript variant
                     X1"
                     /db_xref="GeneID:116746273"
ORIGIN      
        1 catcacagca gcctgggtcc aaccatataa ttcgtgacga ccgttgaagt gaggagaagg
       61 agtcttgcag gggtgttacc gcacattcca tgaggaccct gatttaaacc ttgttgcgcc
      121 aggtggaatg ccaagaaagg aattccagca gcagagcaac ctggggccat ccgtataatc
      181 cgtgcttccc ggtgaagtga ggaggaggag tctcgcaagg gtgttggggt gcattccacg
      241 aggatcctga tttaaccctt gttgcgcccg gatctggtgg aataccaagg aaggggtacc
      301 agcagcagaa cagcctgggg ccatccgtat aattcgtgat atcggttgaa gtgaggagaa
      361 ggagtcttgc aggggtgttg gcgcacattc cgtgaggatc ctggtttaaa ccttgttgcg
      421 ccaggtggaa tgccaagaaa ggaattccag cagcagagca acctggggcc atccgtataa
      481 tccgtgcttc ccggtgaagt gaggaggagg agtctcgcaa gggtgttggg gtgcattcca
      541 cgaggatcct gatttaaccc ttgttgcgcc cggatctggt ggaataccaa ggaaggggta
      601 ccagcagcag aacagcctgg ggccatccgt ataattcgtg atatcggttg aagtgaggag
      661 aaggagtctt gcaggggtgt tggcgcacat tccgtgagga tcctggttta aaccttgttg
      721 cgccaggtgg aatgccaaga aaggaattcc agcagcagag caacctgggg ccatccgtat
      781 aatccgtgct tcccggtgaa gtgaggagga ggagtctcgc aagggtgttg gggtgcattc
      841 cacgaggatc ctgatttaac ccttgttgcg cccggatctg gtggaatacc aaggaagggg
      901 taccagcagc agaacagcct ggggccatcc gtataattcg tgatatcggt tgaagtgagg
      961 agaaggagtc ttgcaggggt gttggcgcac attccgtgag gatcctggtt taaaccttgt
     1021 tgcggtggaa tgccaagaaa ggaattccag
//
LOCUS       XR_004347664             745 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746273
            (LOC116746273), transcript variant X2, ncRNA.
ACCESSION   XR_004347664
VERSION     XR_004347664.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..745
                     /gene="LOC116746273"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746273"
     ncRNA           1..745
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746273"
                     /product="uncharacterized LOC116746273, transcript variant
                     X2"
                     /db_xref="GeneID:116746273"
ORIGIN      
        1 catcacagca gcctgggtcc aaccatataa ttcgtgacga ccgttgaagt gaggagaagg
       61 agtcttgcag gggtgttacc gcacattcca tgaggaccct gatttaaacc ttgttgcgcc
      121 aggtggaatg ccaagaaagg aattccagca gcagagcaac ctggggccat ccgtataatc
      181 cgtgcttccc ggtgaagtga ggaggaggag tctcgcaagg gtgttggggt gcattccacg
      241 aggatcctga tttaaccctt gttgcgccag gtggaatgcc aagaaaggaa ttccagcagc
      301 agagcaacct ggggccatcc gtataatccg tgcttcccgg tgaagtgagg aggaggagtc
      361 tcgcaagggt gttggggtgc attccacgag gatcctgatt taacccttgt tgcgcccgga
      421 tctggtggaa taccaaggaa ggggtaccag cagcagaaca gcctggggcc atccgtataa
      481 ttcgtgatat cggttgaagt gaggagaagg agtcttgcag gggtgttggc gcacattccg
      541 tgaggatcct ggtttaaacc ttgttgcgcc aggtggaatg ccaagaaagg aattccagca
      601 gcagagcaac ctggggccat ccgtataatc cgtgcttccc ggtgaagtga ggaggaggag
      661 tctcgcaagg gtgttggggt gcattccacg aggatcctga tttaaccctt gttgcgccag
      721 gtggaatgcc aagaaaggaa ttcca
//
LOCUS       XM_032617629            4533 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus family with sequence similarity 171
            member A1 (FAM171A1), mRNA.
ACCESSION   XM_032617629
VERSION     XM_032617629.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 11% of CDS bases
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-134               VOSU01000015.1     6866130-6866263
            135-276             VOSU01000015.1     6885129-6885270
            277-639             VOSU01000015.1     6885402-6885764
            640-673             VOSU01000015.1     6885766-6885799
            674-901             VOSU01000015.1     6950578-6950805
            902-994             VOSU01000015.1     6959376-6959468
            995-1153            VOSU01000015.1     6976438-6976596
            1154-1326           VOSU01000015.1     6981113-6981285
            1327-1330           VOSU01000015.1     6981429-6981432
            1331-1447           VOSU01000015.1     7004020-7004136
            1448-1562           VOSU01000015.1     7007087-7007201
            1563-2016           VOSU01000015.1     7007751-7008204
            2017-2208           VOSU01000015.1     7008206-7008397
            2209-2209           "N"                1-1
            2210-4533           VOSU01000015.1     7008398-7010721
FEATURES             Location/Qualifiers
     source          1..4533
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4533
                     /gene="FAM171A1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9 long
                     SRA reads, 2 Proteins, and 85% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746277"
     CDS             1..3270
                     /gene="FAM171A1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons; substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:2104..2106,aa:OTHER)
                     /transl_except=(pos:2185..2187,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: protein FAM171A1"
                     /protein_id="XP_032473520.1"
                     /db_xref="GeneID:116746277"
                     /translation="MAAALLAEPQKPDIARVQQPRVGSQKLLAKVGPAACRAKANKEA
                     RSPLGFLGGSGQEELQDAALLRKPRGPSANLVRGFRPERQLPSFPRGEVAPRPGAWAP
                     PRAGREGVKEAAEARRRLFRGNPPGRAEAGAAVGCWARRRAGRGRGQSGGGPGARGAR
                     RYGGRRGGRLPLTRRSEPVVGQPAPPGALRRGDEQVGGAPALPAGLQRLEGGDKTLRE
                     PGAGAQEVTLKVHISDASTHQPVPDALIEIFTNQVSIASGTSGTDGVAFLKFQYKLGS
                     QLIVTATKHAYVPNSAPWKPIRLPVFSSLSLGLLPERSATLMVYEDVVQIVSGFQGAR
                     PQPRVHFQRRALRLPENTSYSDLTAFLTAAGSPSEVDGFPYLRGLDGNGTGNGTRYDL
                     TPVTAVSVHLLSNDGTPVLVDGPIYVTVPLATQSSLRHNAYVTAWRFDPELGTWLKSG
                     LGLVHQEGSQLTWTYIAPQLGYWVAAMSPPNPGPVVTQDIATYHTVFLLAILGGMAFI
                     LLVLLCLLLYYCRRKCLKPRQHHRKLQLPATLESSKRDQSTSMSHINLLFSRRESEFP
                     GPLSVTSQGRPPDAPGSKELMSGVHLEMMSSSGEVDMHTPMLKLSYSTSQEFSSREEL
                     LSHKEEDKSQISFDNLTPSGTLGKDYCKSVEMFPLKARKSVEREGYESPATVTTGGIT
                     MPCSRSLYLKSKTETGRPPXPTFPQEVSSPFRNTCTPRLHLQRKTSXWNADPLNXMMS
                     RSVDHLERPTSFPRPGQLICCSSVDQVNDSVYRKVLPALVIPAHYMKLPGDHSYVGQP
                     LVVPADQQLEIERLQAELSSPHAGIFPHASSQIQAQPLSCQAISQQHLQDAGTREWTP
                     QNASMSESLSIPASLNDAALAQMNSEVQLLTEKALLELGGGKPLPHPRAWFVSLDGRS
                     NAHVRHSYIDLQRAGRNGSNDASLDSGVDMNEPKSARKGRGDPLSLPQNRPPVQEHAQ
                     KEPRAADSSAYTQLVYLDDMDQSGSEGGTAVGTPEDSALRCLLDGSSRRSGGQLPSLQ
                     EETTKRTSDVPPAPSASSDKRRSAQEDDDDEDDDDDQGEGKKSPWQKREERPLMAFNI
                     K"
     misc_feature    676..3261
                     /gene="FAM171A1"
                     /note="Uncharacterized protein family UPF0560; Region:
                     UPF0560; pfam10577"
                     /db_xref="CDD:463154"
ORIGIN      
        1 atggcggcag ctctgctggc agaaccccag aagccagata tcgcgagagt gcagcagccc
       61 cgcgttggga gccaaaaact gttagcgaaa gtgggtccag ctgcttgccg cgctaaagcc
      121 aataaagagg caagatctcc cctggggttc ctgggtggat cgggacagga ggagctgcag
      181 gatgccgcgc tcctgcgcaa accgagaggg ccatcagcta acctggtgcg agggtttcgg
      241 cctgaaaggc agctaccgtc tttcccgaga ggcgaggtgg caccacggcc cggggcctgg
      301 gcgccgccgc gggcggggcg cgaaggggtt aaggaggcgg cggaggcgcg gcggcggctc
      361 tttcggggaa acccaccggg gcgcgcggag gcgggagcgg ccgtgggctg ctgggcccgg
      421 cgccgcgccg ggcgggggcg cggccaatcg ggcggcgggc ccggcgcgcg cggagccagg
      481 cgatatggag ggaggcgcgg cggccggctg cccctgacgc gccgctccga gccggtggtc
      541 ggccagcccg cgccgcccgg ggccctgcgg cgcggagatg agcaggtcgg cggcgctcct
      601 gctctgcctg ctgggctgca acgtctggaa ggcggtgaca agacgctgcg ggaacccggc
      661 gccggagccc aagaggtcac cctgaaggtc cacatcagtg acgccagcac ccatcagccc
      721 gtccccgatg ccctcattga gattttcacc aaccaggtct ccatcgcctc tggcacctca
      781 gggacagatg gcgtcgcctt cctcaaattc cagtataagc tgggcagtca gctgattgtc
      841 accgccacaa agcacgccta cgtgccaaac tctgccccgt ggaagccaat ccggttaccc
      901 gtgttttctt cgctgagcct gggcctgctt ccagaacgat ctgctactct gatggtgtat
      961 gaagatgttg tccagatagt ctcaggattc caaggtgccc ggccgcagcc tcgcgtgcat
     1021 ttccagagga gagctctgcg gctgcccgag aacaccagct acagtgacct gacagccttt
     1081 ctcacggccg ccggctcccc ctcggaggtg gacggctttc cttatttgcg gggactagat
     1141 ggaaacggaa caggaaacgg caccaggtac gacctgaccc ccgtcacagc cgtcagcgtg
     1201 cacttgctca gcaatgatgg aacgccggtg ctggtggatg gccccattta tgtcaccgtg
     1261 cccctggcca cacagagcag tctgaggcac aatgcctatg tcacagcgtg gcggtttgac
     1321 ccagaattgg gaacgtggct gaagagtggt ctcggcctcg tgcaccagga aggcagccag
     1381 ctgacgtgga catacatcgc ccctcagttg gggtactggg tggcggccat gtctcctccc
     1441 aacccaggtc ccgttgtcac acaggacatc gccacgtatc acacggtgtt tcttttggcc
     1501 atcttgggag gaatggcttt cattcttttg gttttgctgt gtctcctttt atattattgc
     1561 aggcggaagt gcttgaaacc ccgccagcac catagaaaac tgcaacttcc tgccaccctg
     1621 gagagttcca aaagggatca gtcaacttcc atgtcacaca tcaacctgct gttttctcga
     1681 cgggaatcag aattccctgg cccgctctcc gtcaccagcc agggccgccc ccccgacgcc
     1741 ccgggctcaa aggagctgat gagcggagtc catttagaga tgatgtcttc cagcggggag
     1801 gtggacatgc acacgcccat gctgaagctc tcctacagca cctcgcagga gttcagctct
     1861 cgggaggaac tcctgtctca caaggaggag gataaaagcc aaatctcctt tgacaacctg
     1921 acaccgagtg ggacgttggg aaaagactac tgtaagtcgg tggagatgtt ccccttaaag
     1981 gccaggaagt ctgtggaaag ggaaggctat gagtccccag caacagtgac tacaggagga
     2041 attacaatgc catgctctcg cagcctttat ttgaaaagca agacagagac gggcaggcct
     2101 ccgtgaccca catttccaca ggaagtaagc tcaccattca ggaacacatg taccccgcgc
     2161 cttcatctcc agagaaagac cagctgatgg aacgcagacc cactgaatng tatgatgtcg
     2221 cgatccgtag accacctgga gagacctacc tctttcccgc ggcccggcca gctgatctgc
     2281 tgtagttccg tggaccaggt caatgacagc gtttacagga aagtattacc cgccttggtc
     2341 atcccggctc attacatgaa actcccaggg gaccattcgt atgtgggcca gcccctggtc
     2401 gtcccagccg accagcagct cgagatcgaa agactgcagg ctgagctctc cagccctcac
     2461 gcggggatct tcccacacgc ctcctcacag atccaggccc agcccttatc ttgccaggcc
     2521 atctcgcagc agcacctgca ggacgcgggc acccgggagt ggaccccaca gaatgcgtcc
     2581 atgtccgagt ccctctccat cccggcatcc ctgaacgacg cggccttggc tcagatgaac
     2641 agcgaggtcc agctactgac cgaaaaggcg ctgttggaac ttgggggtgg gaagcccctt
     2701 ccccaccccc gggcctggtt cgtgtccctg gacggccggt ccaatgcaca cgtcagacat
     2761 tcctacattg atctccaaag agctgggagg aacggaagca atgatgccag tttggattct
     2821 ggcgtggata tgaatgaacc caaatctgcc cgaaagggaa gaggagaccc cttgtctctg
     2881 ccgcagaacc gcccaccggt ccaggagcat gcgcagaaag agccgcgggc cgcggacagc
     2941 tcggcctaca cgcagctcgt gtacctggac gacatggacc agagcggcag cgagggcggc
     3001 accgcggtcg ggacgcccga ggacagtgcc ctgcggtgcc tgctggacgg ctccagccgg
     3061 agaagcggcg gccagttgcc cagcctgcag gaggagacga cgaaacgaac ctcggacgtc
     3121 cccccggcgc catcggccag ttccgacaag aggcgatccg ctcaggagga cgacgacgat
     3181 gaagacgacg acgacgacca gggcgaaggc aagaagagcc cgtggcagaa acgggaggag
     3241 cgacccctga tggcgttcaa catcaaatga gcggccccga gccgcccaac agggggacta
     3301 gaatccagtt gccaaaaatt ctttcttacg gaagcgctga cctgtttgcg gaggaagtgg
     3361 aaccacgtcc accgtgggaa gtggactttt ttctgcaatt accgtttgct gtcaaagtgt
     3421 ttggaagtaa agttcttact cagaagaaag aatgcgtcgc ctccagggag atggccgaac
     3481 ggagtgtcag aatgtccgcg tcgttccccg tacttgatgt gtccaccccc gaggacacca
     3541 aaaaaccaca cgtgatgtcg ctgagttctg atgataacct cagttctccc gcagattctg
     3601 ggaacagatg aaactctttt tgcattgctt gaatccattc tatcacaata atgctcctgt
     3661 gaagttatta ttgagaaatt agcttggcac ttagtgtctg gaggtatgca ttatctcaaa
     3721 ggaaaactat gcatcgctgc ttcgtggtct tactttgctt agattgttgc tttggctagg
     3781 tttcgtttcc gatttgcttt tgttaaacac acacacacac acacacacac acacacacac
     3841 acacacacac acaatttggt tgtaaggaat ctattccttc gttttcgcct gtggtttatt
     3901 tcggtatctc ctttcaggaa cttctgagtg tcacctctga acatccaagc ctcttaatga
     3961 aatcgtactg aagtttttat cagctgccag tccttcactt ctggtcccat taactccaag
     4021 tgcctttttt acagtgacaa cagacagtcc ctttgctttt ttttcgtttg tttttcttaa
     4081 cttctttcat tgaactgcct ggattttata aagttatgaa acgatccccc ttttctttca
     4141 actgcatgcc gccaagtgcc cattcgtgct ccgaattctc atttcagctc agtgtgttct
     4201 gtcgttctca cgtgtgacgt ggattctgtt tagctaagct agcctagagg acactttagc
     4261 ggtcctcttc ccttctccat ccttttggcc attaggcacc attatggttt tattggctgt
     4321 ttgtatatat ggttacgtat taactctgga atcctatggg ctgagcttgc ttaccaaaca
     4381 cagagtatgg gctgagcaag tagactgaat gtgactatta aatcttatgt actatccaaa
     4441 agtgccagaa tgattcttct gtgcattctc cttaaagagc tgcttggtta tccaaaaatg
     4501 aaaactcaga ataaactctt aaaaaaacaa aaa
//
LOCUS       XM_032617642            8535 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 4A (DENND4A),
            transcript variant X1, mRNA.
ACCESSION   XM_032617642
VERSION     XM_032617642.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8535
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8535
                     /gene="DENND4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746283"
     CDS             382..6135
                     /gene="DENND4A"
                     /codon_start=1
                     /product="C-myc promoter-binding protein isoform X1"
                     /protein_id="XP_032473533.1"
                     /db_xref="GeneID:116746283"
                     /translation="MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEP
                     ITDVSVIIKSLGEEVPWDYTCIDVTPTGLSADLNNGSLVGPQIFLCYRRGRDKPPLTD
                     LGVLYDWKERLKQGCEVIQSTPYGRPANISGSTSSQRIYITYRRASENMTQNTLAVTD
                     ICIIIPSKGESPPHTFCKVDKNLNNSMWGSAVYLCYKKSVAKTNTISYKAGLICRYPQ
                     EDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGASAEKVYGAAIQFY
                     EPYSEENLTEKQRFLLGLASSADEKSDSSKTIHTSKCICLLSHWPFFDAFRKFLTFLY
                     RYSISGPHVLPIEKHISHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGG
                     KFSTLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYV
                     PLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDLDTNTISQTGDKKNVAWKV
                     LPKKPCKNLMNTLNNLHQQLAKLQQRPRDDGLMDLAMNDYDFNSGKRLHMIDLEIQEA
                     FLCFMASILKGYRSYLRPITQAPSETATDAASLFALQAFLRSRDRSHQKFYNMMTKTQ
                     MFIRFIEECSFVSDKDASLAFFDDCVDKVDMDKSGEVRLIELDESFKSEHTVFVTPPE
                     IPHLPNGEEPPLQYSYNGFPVLRNNLFERPEGFLQTRKSKLPSKSSSPSSPSPMFRRT
                     KQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFICLPAYVKVCHSKVRALKTAYDVL
                     KKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAV
                     LESTWPSRSRSGYFLWTKVRNVVLGVAQFKRALKKHTHLSQTTLSADGSDLDAVSHGS
                     MDSGHGTHTVEQAPFNTGLIKVYASDDRSSTGGQSDLGYNSLSKDEVRRGDTSTEDIQ
                     EEEDKKGSDSSSLSESESAKGSADCLPKLNYQSSSSIVRLSAATNSADKTSGESTESS
                     SEPLLISSFEDTNETGNIHSRCFRKRHKSDNEPNLQQQISWGNRNRNLSGGVLMGLML
                     NRINQEANPGDMVEKLGADARILSNVISKSTRPNSLDIGKPSLRSKRDSIEKESSDDD
                     TPFDGSNCLADKVDSPVIFDLEDLDNETDGSKVGYIAPQNPKRSQRLNSSFSVKPFEK
                     TDVATGFDPLSLLVAETEQQQKEEEEEEEDDSKSVSTPSARRDLAEEIVMYMNNMSSP
                     LTSRTPSIDLQRACDDKVTTKKSPTLVKACRRSSLPPNSPGPVRLTKSKSYSKSEDRP
                     RDRLWSSPAFSPTCPFREESQDALTHSSPSFNLDTLLVPKLDVLRNSMFTAGKGVAEK
                     ASKWYSRFTMYTTSSKDQSSDRTSLSSVGAQDSESTSLTDEEVCHELEGATSCQESSA
                     TAGTKGIDFSRTSLEGSSSLEGSLSKFALPGKSEVASSCNTSNTNIFQNYAMEVLISS
                     CSRCRTCDCLVHDEEIMAGWTADDSNLNTTCPFCGNLFLPFLNIEIRDLRRPGRYFLK
                     SSPSTENMHFPSSFSRQTRQSCISTSASGLDTSVLSVQGNFDLNSKSKLLENTCARSI
                     QIPADRSRAALSKCPVFPMARSVSTYGTLDKENNGGQKLIPTGSLPTTLQGATDSLGL
                     EWHLPSPDPITVPYLSPLVVWKELESLLENEGDHAITVADFVDHHPIVFWNLVWYFRR
                     LDLPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNMKLHQDPGQPLYILW
                     NAHSQNRTLLFETQKYPMVHLLQKGDNSFNQELLKNMVKSIKMNDVYGPMSQILETLN
                     KCPHFKRQRSLYREILFLSLVALGRENIDIDAFDKEYKVAYDRLTPSQVKSTHNCDRP
                     PSTGVMECRKTFGEPYL"
     misc_feature    961..1209
                     /gene="DENND4A"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    1306..1860
                     /gene="DENND4A"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2059..2280
                     /gene="DENND4A"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
     misc_feature    2806..2928
                     /gene="DENND4A"
                     /note="PPR repeat family; Region: PPR_2; pfam13041"
                     /db_xref="CDD:463778"
     misc_feature    2812..2901
                     /gene="DENND4A"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      
        1 gtcaagatgg cgccggtcgc agcggcggcg gccgcggcgg ctggaaccag aggaggcgga
       61 ggcagcggcg gccgcgaggg gagggggagt cccgtctgac tgagacggca ggcctgggcg
      121 ggcgggggtg ccgcgcaggg cggagcgccg ggctgggaat gagctaagcg ggttctgagc
      181 cccgcggcat tcagcctctc gtgtcccgac gccgctggtg agtggacgcg gcaccgctct
      241 ccaagctcga ccagctgctc gcgagggagc cagcggtgag tatttctcaa actccaaggc
      301 ttgcagaatt cacaaattga gatctggcat cattttcaga gagagacttt cagtaatgta
      361 tgtaaccttc tgtaatggaa gatgattgaa gataaggggc ctcgtgttgc tgactacttt
      421 gttgtagcgg gattaactga tgtttcaaag cctcttgaag aagaaattca cttcaatgat
      481 gcttgtcata aagtagctaa accaaaagaa cctatcacag atgtttcagt tattattaaa
      541 tctcttgggg aggaagtgcc atgggattac acgtgtattg atgttacccc aactggactg
      601 tcagctgatc tcaataatgg aagtcttgtg gggccgcaga ttttcctttg ctatagaaga
      661 ggaagagata agcctccact tacagatctg ggggttttat atgactggaa agaaagattg
      721 aaacaggggt gtgaagttat ccagagtact ccttacggac gccctgcaaa tattagcggc
      781 agtacctcat cacaaagaat ttatatcact taccgaagag cctctgaaaa catgactcag
      841 aatacgttgg ctgttacaga catatgtatt attataccca gtaaaggaga aagtccacca
      901 cacacattct gcaaagttga caagaatctc aataacagta tgtggggatc agcagtgtac
      961 ttatgttata aaaaatcggt ggcaaagact aacactatat cttacaaagc tggtctaatt
     1021 tgtagatacc ctcaagaaga ttatgagtca ttctcactcc cagaatctgt tcccctattt
     1081 tgtttaccaa tgggtgcaac tattgaatgt tggccatcaa atagcaaata ccctctccct
     1141 gtattttcta catttgtgtt aactggagcc tcagctgaaa aggtctatgg tgctgctatt
     1201 cagttttatg aaccatactc cgaagagaat ctcacagaaa aacagagatt tcttttgggt
     1261 ttagcatcat cagcagatga gaagtctgat agttccaaga caattcacac tagtaaatgc
     1321 atctgtcttc tctctcactg gccttttttt gatgcattca ggaagtttct gacttttcta
     1381 tatcgttatt ccatctctgg gcctcatgtc cttccaattg agaagcatat ttctcatttt
     1441 atgcataaag ttccttttcc atctcctcag agaccacgga ttttagttca gttatcacca
     1501 catgataatc tgattctcag tcagcctgtt tcttcacctc ttccgctaag cggtggcaag
     1561 ttttcaacac tacttcagaa tttaggccct gaaaatgctg tgacactact ggtgtttgca
     1621 gtaacggaac ataagattct tattcattcc ttacggcctt cagtgcttac tagtgtgaca
     1681 gaagcattag tgtctatgat tttccctttc cactggccat gcccctatgt tcctctctgc
     1741 ccactggctt tagcagatgt cttaagtgca ccatgtccgt tcatagtagg aattgattca
     1801 agatactttg atctctatga ccctccacca gatgtcagtt gtgttgacct agataccaac
     1861 acaatttctc aaactggtga taagaaaaat gtagcctgga aggtacttcc aaagaaacca
     1921 tgtaaaaatc tgatgaacac actgaataat ttgcaccagc agttggcaaa attgcagcag
     1981 agaccaagag acgatggact aatggactta gcaatgaatg attatgattt taattctgga
     2041 aagaggttgc acatgataga tttggaaatc caggaggcat ttttgtgttt catggcctct
     2101 attttaaaag gttatagatc atacttacga ccaataacac aagccccatc tgagacagcc
     2161 acagatgcag cctctctttt tgccctacaa gctttcttaa gaagccgtga ccggtcacat
     2221 cagaaattct ataacatgat gaccaaaaca caaatgttta ttcgcttcat tgaggaatgt
     2281 tcttttgtca gtgataaaga tgcaagcctg gcgttttttg atgattgtgt agataaagtg
     2341 gatatggaca agagtggtga agtgcgactt atagaactgg atgaatcttt caaaagtgaa
     2401 catactgttt ttgtaacacc acctgagatt ccccatctac ccaatggtga agaaccccct
     2461 ttacagtaca gctataatgg atttccagtt cttaggaaca atttatttga gagacctgaa
     2521 ggatttctac aaacccgaaa gagcaaattg ccttcaaaat caagtagtcc tagtagccct
     2581 tctcccatgt tcagaagaac aaaacaggaa attaaatcag cccataaaat tgccaagagg
     2641 tactcttcca ttcctcagat gtggtctagg tgtctactgc gtcactgtta cgggctgtgg
     2701 tttatttgtc tcccagctta tgtgaaagta tgtcattcaa aagtcagggc tctgaaaaca
     2761 gcctatgatg tgcttaaaaa aatgcagtca aagaagatgg atccacctga tgaggtgtgc
     2821 taccgcattc ttatgcagct ctgtggacag tatgatcagc cagtgcttgc agttcgagtg
     2881 ctgtttgaaa tgcagaaagc tggtattgac cccaatgcca taacttatgg ttattataat
     2941 aaggctgttt tggaaagtac ctggccttca aggagtcgta gtggctattt tctttggaca
     3001 aaagtgagga acgttgtttt gggagtagca cagttcaaaa gagctttaaa gaaacacaca
     3061 catttatcac aaacaactct ctcagcagat ggcagtgacc tggatgctgt tagtcatggc
     3121 agcatggata gtggtcatgg gacacacact gtggagcagg caccttttaa tacgggttta
     3181 atcaaagtgt atgcttctga tgatagatct agtacaggtg gccagtctga ccttggatat
     3241 aattcactat ctaaggatga agttagaaga ggggatacat ctactgagga cattcaagaa
     3301 gaagaagata agaaagggag tgattctagt tccttgtcag agagcgagag tgcaaaggga
     3361 agtgctgatt gtcttcctaa gctcaattat caaagttctt ccagtatagt tcgcctcagt
     3421 gctgcaacta acagtgctga taaaacatca ggagaaagca cagaaagttc gtctgagccg
     3481 ctcttaatat catcttttga ggatacaaat gaaacaggaa acattcacag tagatgcttc
     3541 agaaaaagac ataaaagtga caatgagcct aatttgcagc agcaaatatc ctggggaaat
     3601 agaaaccgaa atcttagtgg aggagtacta atgggactta tgctcaatag aattaaccag
     3661 gaagcaaacc ctggagatat ggttgaaaaa ttaggagctg atgcaagaat tctttcaaat
     3721 gtaatctcaa aaagcacaag accaaatagt cttgatattg gaaagccatc tttaagatca
     3781 aagagagaca gtatagagaa ggaatctagt gatgatgata caccttttga tggttctaat
     3841 tgtttggcag ataaagtgga ttctcctgtt atttttgact tagaagactt agacaatgaa
     3901 acagatggat caaaagtggg gtacattgct ccacaaaatc ctaagaggag tcaacgcttg
     3961 aatagcagct tttcagtaaa acctttcgaa aaaactgatg ttgcaacagg atttgatccc
     4021 ctctctcttt tggttgctga gactgaacag cagcaaaaag aggaggagga agaggaggaa
     4081 gatgatagca aaagcgtttc gacaccatct gctaggcggg atttagctga agaaattgtg
     4141 atgtatatga ataacatgag cagtcctttg acaagtcgaa caccaagcat tgatttacaa
     4201 cgggcctgtg atgataaagt aaccactaag aaaagtccaa cgttggtcaa ggcatgcaga
     4261 agatctagcc tgcctcctaa ttctcctggg ccagtgagac ttaccaaatc taaaagttac
     4321 tcaaaaagcg aagacagacc aagggataga ctctggtctt ctccagcctt ctcacctact
     4381 tgcccattta gagaagaatc tcaagatgca ttaacccatt catcaccttc atttaattta
     4441 gatacactac tagtacctaa actagatgtt ctaagaaaca gtatgttcac tgctggaaaa
     4501 ggagttgcag agaaagcaag caaatggtat tcaagattca ccatgtacac cacatcatcc
     4561 aaggatcaaa gttctgatcg taccagtctt tcttcagtgg gagcccagga ttctgaatct
     4621 acctctttaa cagatgaaga ggtctgccac gagttggaag gagccacttc ttgtcaggaa
     4681 agcagtgcca ctgcagggac taagggaatt gatttcagca gaacaagcct ggaaggttct
     4741 tcctccttag aaggatcctt gtccaagttt gccttacctg ggaagtcaga agtggcatct
     4801 tcctgcaaca cgagtaatac aaatatcttc cagaactatg caatggaggt tcttatctcg
     4861 agctgctctc gttgtagaac ctgtgattgt cttgtccatg atgaggaaat catggctggc
     4921 tggacagcag atgattcaaa tctcaataca acctgcccat tttgtggcaa tcttttcttg
     4981 ccctttctga acatcgaaat aagagattta agacgacctg gaagatactt tttgaagtca
     5041 agcccgtcta cagaaaatat gcattttcca tcctcctttt caaggcagac aaggcagtct
     5101 tgtatctcaa catcagcctc gggtcttgac acatctgttc tctctgttca agggaatttt
     5161 gatctaaata gcaaatcaaa gttgctcgaa aatacatgtg cccgaagtat tcagatccct
     5221 gctgatagat caagagcagc tttgtcaaaa tgtccagtat ttccaatggc caggagtgtt
     5281 agtacttatg gcaccttgga taaggaaaac aatggaggac agaagctcat tcctacaggc
     5341 agcctgccaa ctactttaca aggagctaca gattctttag gattagaatg gcacctccca
     5401 agtccagatc ctatcactgt tccatatctt agtcctttag tggtatggaa ggaacttgaa
     5461 agcttattgg aaaatgaagg tgatcatgca ataacagtgg cagactttgt ggaccatcat
     5521 ccaattgttt tttggaacct ggtgtggtat tttagacgtc ttgacttacc cagtaattta
     5581 cctggattga ttctttcttc tgagcattgt aacaagtatt caaagattcc tcgccactgt
     5641 atgtctgaag acagtaaata tgttttaata caaatgttgt gggacaatat gaaattacat
     5701 caggatccag gacagccgtt gtacatcctc tggaatgccc acagtcaaaa tcgtactctt
     5761 ttgtttgaga cccagaagta tccaatggtc catttattgc aaaaaggtga taattcattt
     5821 aaccaggaac tattgaaaaa tatggtaaaa agcattaaaa tgaatgacgt ctatggacca
     5881 atgagtcaga ttttagagac actgaataaa tgtcctcatt ttaaaagaca gaggagttta
     5941 tatagagaaa tactgtttct ctcacttgtg gcactgggaa gagaaaacat tgatatagat
     6001 gcatttgata aagaatacaa ggtggcatat gatcgtctca cacctagtca agtcaagagt
     6061 actcacaact gtgacagacc accaagtaca ggagtgatgg aatgtcgaaa aacctttgga
     6121 gaaccttatc tttaagatat gtgtgtgtgt tttttcaata cgtattgtgt agtcagtgta
     6181 taaaataaca cttttagact ctaacctttt ttcttcagtt tttgaaaatg cacttgtaaa
     6241 tggttcagga agttcagata gtttatgtac agagtgtctg aagaaaatac taacaagtgg
     6301 gagagagcta ctttgtttcc catttctttg ttttttcttc tcccgtacaa gtagttaagt
     6361 atttttgtga tgaaaaaatc cataaacaaa attggttccc atagaataag acaactgttt
     6421 tatggattct tttggaagag acagattgaa aaatcatgga tggaacttaa acaaatgtaa
     6481 gaacaaagta tctcctgttt tcatagacta ctcaaatgtt ttgaccgtga agttgtatta
     6541 tacatatttt aacttgttta taataagttg atattttttt aatttttaaa cttaatatag
     6601 caaacaaaat gaacttaatc ttatgaagca aggtaattaa gtgcttattt tccttgtctg
     6661 ctgctatttg aagtaattag tacagctgca gatctctata tgtatatcta tacttttttt
     6721 actacttgga agaatgattc agaaatgtca gcgctagtgt cagtgttgtc ctaggatcgc
     6781 atattagtac tcctgtgcct gactgcagtg ggtgagtcat ggcaagggtg tgcattgccc
     6841 agactgactc actgagcctt gtggaaggac agccagagag gttccaaatc tgcttctgta
     6901 aaatcaggtt caatatacca tgattccaaa attgtctcta ttgctaatag atacatacaa
     6961 tacacaggga aaatagctta tagagccaaa tatcaattta aattttaata ttctacatga
     7021 acacttatgt taggaaatat gtcagacagt ttatcccaaa ttctaccttt attttaatat
     7081 ctaaaatatt ggatatgatg caaattgtag tatgtttatc tggaatatga cctattggag
     7141 tattctgtta atattatata tatatatatt atatataaat attcaaaata ttttttcaaa
     7201 agtagaaaaa taataactct ctaaaagtac agccagatag aatttcccat attgaggaac
     7261 ctggcttttt caataagcct tcagaatctg gtttatggaa tctaaaatcc agcaatatcc
     7321 agaaatagac agtaaactga atgtttaagt accatgggta ttaaatagaa tcttaaaaaa
     7381 tatttgtagt cgcattattt ctaatatcac tttctttggg taattctgat aaaaaagtat
     7441 cctttggccg ttagaattat ttatagattt tcagtgtgtt catgtgtgtg tttgcacaca
     7501 ttgtcataat gaaggaattc tctagccaat ttcaaagaag gaaaaaatga aaggtcctaa
     7561 attagatgtg tagaagccgg cagagttcag gacactttgg actggagata ccttaaagtc
     7621 ctgagactaa gaaccagttc agctgtagaa aaaacacttt tgagttcatc ccactagtga
     7681 atagcaccaa gctaaaacat ttcacagctt tctactctgg gaaataatgg agaaagttta
     7741 aaaatgtaaa attttagttc agttagtttg gcgctgaact tgcttacttg aaaagtctgg
     7801 tgctgtgcac atgtatctgc ctctcttttg taaataccac tcttgtctta tccttccttc
     7861 ctattcaggt ccacgcttca cattctaatt cagtcttacg ttctctaagt cacagtcatt
     7921 tcaaaggaga gaaacatttg atagatgagg cttttggcat tagtgacaaa catccctcca
     7981 aacagaattc tggggttcta ttctggtttt ttgttattgt ttgtataaga acagctttca
     8041 ctattgatta tcttttcttt aacacaagca atgtatatga ataacagttt attgatttca
     8101 aatatctgac caaaaaaagt aaggtaaagc ccattcttta tggttcagac tcatttggaa
     8161 aagtgaatgt aatttttatc tccttcccct gacaccaagt tttgtttcta cttttgactg
     8221 ggttttattt cccctatttt caatccccag ggaatattat ttgcacaaat ctactcttta
     8281 aaaataaaac ctaaaacatg aatagagagt ggtaaacctt gatcaaaaga aaattaaaat
     8341 gtagatcatc ctttgaaata actccataca aacttttctt caattttatc tctgttgacc
     8401 atacatttta gagaatcatg gccaatcatg ttagagagaa ataccctttt gctacattat
     8461 ctgtctttta ttttcttact cttagttttg tttatctgtt tactagttga aaataaatca
     8521 tgccatgtcc tggta
//
LOCUS       XM_032617651            6571 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 4A (DENND4A),
            transcript variant X2, mRNA.
ACCESSION   XM_032617651
VERSION     XM_032617651.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6571
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6571
                     /gene="DENND4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746283"
     CDS             382..6135
                     /gene="DENND4A"
                     /codon_start=1
                     /product="C-myc promoter-binding protein isoform X1"
                     /protein_id="XP_032473542.1"
                     /db_xref="GeneID:116746283"
                     /translation="MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEP
                     ITDVSVIIKSLGEEVPWDYTCIDVTPTGLSADLNNGSLVGPQIFLCYRRGRDKPPLTD
                     LGVLYDWKERLKQGCEVIQSTPYGRPANISGSTSSQRIYITYRRASENMTQNTLAVTD
                     ICIIIPSKGESPPHTFCKVDKNLNNSMWGSAVYLCYKKSVAKTNTISYKAGLICRYPQ
                     EDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGASAEKVYGAAIQFY
                     EPYSEENLTEKQRFLLGLASSADEKSDSSKTIHTSKCICLLSHWPFFDAFRKFLTFLY
                     RYSISGPHVLPIEKHISHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGG
                     KFSTLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYV
                     PLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDLDTNTISQTGDKKNVAWKV
                     LPKKPCKNLMNTLNNLHQQLAKLQQRPRDDGLMDLAMNDYDFNSGKRLHMIDLEIQEA
                     FLCFMASILKGYRSYLRPITQAPSETATDAASLFALQAFLRSRDRSHQKFYNMMTKTQ
                     MFIRFIEECSFVSDKDASLAFFDDCVDKVDMDKSGEVRLIELDESFKSEHTVFVTPPE
                     IPHLPNGEEPPLQYSYNGFPVLRNNLFERPEGFLQTRKSKLPSKSSSPSSPSPMFRRT
                     KQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFICLPAYVKVCHSKVRALKTAYDVL
                     KKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAV
                     LESTWPSRSRSGYFLWTKVRNVVLGVAQFKRALKKHTHLSQTTLSADGSDLDAVSHGS
                     MDSGHGTHTVEQAPFNTGLIKVYASDDRSSTGGQSDLGYNSLSKDEVRRGDTSTEDIQ
                     EEEDKKGSDSSSLSESESAKGSADCLPKLNYQSSSSIVRLSAATNSADKTSGESTESS
                     SEPLLISSFEDTNETGNIHSRCFRKRHKSDNEPNLQQQISWGNRNRNLSGGVLMGLML
                     NRINQEANPGDMVEKLGADARILSNVISKSTRPNSLDIGKPSLRSKRDSIEKESSDDD
                     TPFDGSNCLADKVDSPVIFDLEDLDNETDGSKVGYIAPQNPKRSQRLNSSFSVKPFEK
                     TDVATGFDPLSLLVAETEQQQKEEEEEEEDDSKSVSTPSARRDLAEEIVMYMNNMSSP
                     LTSRTPSIDLQRACDDKVTTKKSPTLVKACRRSSLPPNSPGPVRLTKSKSYSKSEDRP
                     RDRLWSSPAFSPTCPFREESQDALTHSSPSFNLDTLLVPKLDVLRNSMFTAGKGVAEK
                     ASKWYSRFTMYTTSSKDQSSDRTSLSSVGAQDSESTSLTDEEVCHELEGATSCQESSA
                     TAGTKGIDFSRTSLEGSSSLEGSLSKFALPGKSEVASSCNTSNTNIFQNYAMEVLISS
                     CSRCRTCDCLVHDEEIMAGWTADDSNLNTTCPFCGNLFLPFLNIEIRDLRRPGRYFLK
                     SSPSTENMHFPSSFSRQTRQSCISTSASGLDTSVLSVQGNFDLNSKSKLLENTCARSI
                     QIPADRSRAALSKCPVFPMARSVSTYGTLDKENNGGQKLIPTGSLPTTLQGATDSLGL
                     EWHLPSPDPITVPYLSPLVVWKELESLLENEGDHAITVADFVDHHPIVFWNLVWYFRR
                     LDLPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNMKLHQDPGQPLYILW
                     NAHSQNRTLLFETQKYPMVHLLQKGDNSFNQELLKNMVKSIKMNDVYGPMSQILETLN
                     KCPHFKRQRSLYREILFLSLVALGRENIDIDAFDKEYKVAYDRLTPSQVKSTHNCDRP
                     PSTGVMECRKTFGEPYL"
     misc_feature    961..1209
                     /gene="DENND4A"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    1306..1860
                     /gene="DENND4A"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2059..2280
                     /gene="DENND4A"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
     misc_feature    2806..2928
                     /gene="DENND4A"
                     /note="PPR repeat family; Region: PPR_2; pfam13041"
                     /db_xref="CDD:463778"
     misc_feature    2812..2901
                     /gene="DENND4A"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      
        1 gtcaagatgg cgccggtcgc agcggcggcg gccgcggcgg ctggaaccag aggaggcgga
       61 ggcagcggcg gccgcgaggg gagggggagt cccgtctgac tgagacggca ggcctgggcg
      121 ggcgggggtg ccgcgcaggg cggagcgccg ggctgggaat gagctaagcg ggttctgagc
      181 cccgcggcat tcagcctctc gtgtcccgac gccgctggtg agtggacgcg gcaccgctct
      241 ccaagctcga ccagctgctc gcgagggagc cagcggtgag tatttctcaa actccaaggc
      301 ttgcagaatt cacaaattga gatctggcat cattttcaga gagagacttt cagtaatgta
      361 tgtaaccttc tgtaatggaa gatgattgaa gataaggggc ctcgtgttgc tgactacttt
      421 gttgtagcgg gattaactga tgtttcaaag cctcttgaag aagaaattca cttcaatgat
      481 gcttgtcata aagtagctaa accaaaagaa cctatcacag atgtttcagt tattattaaa
      541 tctcttgggg aggaagtgcc atgggattac acgtgtattg atgttacccc aactggactg
      601 tcagctgatc tcaataatgg aagtcttgtg gggccgcaga ttttcctttg ctatagaaga
      661 ggaagagata agcctccact tacagatctg ggggttttat atgactggaa agaaagattg
      721 aaacaggggt gtgaagttat ccagagtact ccttacggac gccctgcaaa tattagcggc
      781 agtacctcat cacaaagaat ttatatcact taccgaagag cctctgaaaa catgactcag
      841 aatacgttgg ctgttacaga catatgtatt attataccca gtaaaggaga aagtccacca
      901 cacacattct gcaaagttga caagaatctc aataacagta tgtggggatc agcagtgtac
      961 ttatgttata aaaaatcggt ggcaaagact aacactatat cttacaaagc tggtctaatt
     1021 tgtagatacc ctcaagaaga ttatgagtca ttctcactcc cagaatctgt tcccctattt
     1081 tgtttaccaa tgggtgcaac tattgaatgt tggccatcaa atagcaaata ccctctccct
     1141 gtattttcta catttgtgtt aactggagcc tcagctgaaa aggtctatgg tgctgctatt
     1201 cagttttatg aaccatactc cgaagagaat ctcacagaaa aacagagatt tcttttgggt
     1261 ttagcatcat cagcagatga gaagtctgat agttccaaga caattcacac tagtaaatgc
     1321 atctgtcttc tctctcactg gccttttttt gatgcattca ggaagtttct gacttttcta
     1381 tatcgttatt ccatctctgg gcctcatgtc cttccaattg agaagcatat ttctcatttt
     1441 atgcataaag ttccttttcc atctcctcag agaccacgga ttttagttca gttatcacca
     1501 catgataatc tgattctcag tcagcctgtt tcttcacctc ttccgctaag cggtggcaag
     1561 ttttcaacac tacttcagaa tttaggccct gaaaatgctg tgacactact ggtgtttgca
     1621 gtaacggaac ataagattct tattcattcc ttacggcctt cagtgcttac tagtgtgaca
     1681 gaagcattag tgtctatgat tttccctttc cactggccat gcccctatgt tcctctctgc
     1741 ccactggctt tagcagatgt cttaagtgca ccatgtccgt tcatagtagg aattgattca
     1801 agatactttg atctctatga ccctccacca gatgtcagtt gtgttgacct agataccaac
     1861 acaatttctc aaactggtga taagaaaaat gtagcctgga aggtacttcc aaagaaacca
     1921 tgtaaaaatc tgatgaacac actgaataat ttgcaccagc agttggcaaa attgcagcag
     1981 agaccaagag acgatggact aatggactta gcaatgaatg attatgattt taattctgga
     2041 aagaggttgc acatgataga tttggaaatc caggaggcat ttttgtgttt catggcctct
     2101 attttaaaag gttatagatc atacttacga ccaataacac aagccccatc tgagacagcc
     2161 acagatgcag cctctctttt tgccctacaa gctttcttaa gaagccgtga ccggtcacat
     2221 cagaaattct ataacatgat gaccaaaaca caaatgttta ttcgcttcat tgaggaatgt
     2281 tcttttgtca gtgataaaga tgcaagcctg gcgttttttg atgattgtgt agataaagtg
     2341 gatatggaca agagtggtga agtgcgactt atagaactgg atgaatcttt caaaagtgaa
     2401 catactgttt ttgtaacacc acctgagatt ccccatctac ccaatggtga agaaccccct
     2461 ttacagtaca gctataatgg atttccagtt cttaggaaca atttatttga gagacctgaa
     2521 ggatttctac aaacccgaaa gagcaaattg ccttcaaaat caagtagtcc tagtagccct
     2581 tctcccatgt tcagaagaac aaaacaggaa attaaatcag cccataaaat tgccaagagg
     2641 tactcttcca ttcctcagat gtggtctagg tgtctactgc gtcactgtta cgggctgtgg
     2701 tttatttgtc tcccagctta tgtgaaagta tgtcattcaa aagtcagggc tctgaaaaca
     2761 gcctatgatg tgcttaaaaa aatgcagtca aagaagatgg atccacctga tgaggtgtgc
     2821 taccgcattc ttatgcagct ctgtggacag tatgatcagc cagtgcttgc agttcgagtg
     2881 ctgtttgaaa tgcagaaagc tggtattgac cccaatgcca taacttatgg ttattataat
     2941 aaggctgttt tggaaagtac ctggccttca aggagtcgta gtggctattt tctttggaca
     3001 aaagtgagga acgttgtttt gggagtagca cagttcaaaa gagctttaaa gaaacacaca
     3061 catttatcac aaacaactct ctcagcagat ggcagtgacc tggatgctgt tagtcatggc
     3121 agcatggata gtggtcatgg gacacacact gtggagcagg caccttttaa tacgggttta
     3181 atcaaagtgt atgcttctga tgatagatct agtacaggtg gccagtctga ccttggatat
     3241 aattcactat ctaaggatga agttagaaga ggggatacat ctactgagga cattcaagaa
     3301 gaagaagata agaaagggag tgattctagt tccttgtcag agagcgagag tgcaaaggga
     3361 agtgctgatt gtcttcctaa gctcaattat caaagttctt ccagtatagt tcgcctcagt
     3421 gctgcaacta acagtgctga taaaacatca ggagaaagca cagaaagttc gtctgagccg
     3481 ctcttaatat catcttttga ggatacaaat gaaacaggaa acattcacag tagatgcttc
     3541 agaaaaagac ataaaagtga caatgagcct aatttgcagc agcaaatatc ctggggaaat
     3601 agaaaccgaa atcttagtgg aggagtacta atgggactta tgctcaatag aattaaccag
     3661 gaagcaaacc ctggagatat ggttgaaaaa ttaggagctg atgcaagaat tctttcaaat
     3721 gtaatctcaa aaagcacaag accaaatagt cttgatattg gaaagccatc tttaagatca
     3781 aagagagaca gtatagagaa ggaatctagt gatgatgata caccttttga tggttctaat
     3841 tgtttggcag ataaagtgga ttctcctgtt atttttgact tagaagactt agacaatgaa
     3901 acagatggat caaaagtggg gtacattgct ccacaaaatc ctaagaggag tcaacgcttg
     3961 aatagcagct tttcagtaaa acctttcgaa aaaactgatg ttgcaacagg atttgatccc
     4021 ctctctcttt tggttgctga gactgaacag cagcaaaaag aggaggagga agaggaggaa
     4081 gatgatagca aaagcgtttc gacaccatct gctaggcggg atttagctga agaaattgtg
     4141 atgtatatga ataacatgag cagtcctttg acaagtcgaa caccaagcat tgatttacaa
     4201 cgggcctgtg atgataaagt aaccactaag aaaagtccaa cgttggtcaa ggcatgcaga
     4261 agatctagcc tgcctcctaa ttctcctggg ccagtgagac ttaccaaatc taaaagttac
     4321 tcaaaaagcg aagacagacc aagggataga ctctggtctt ctccagcctt ctcacctact
     4381 tgcccattta gagaagaatc tcaagatgca ttaacccatt catcaccttc atttaattta
     4441 gatacactac tagtacctaa actagatgtt ctaagaaaca gtatgttcac tgctggaaaa
     4501 ggagttgcag agaaagcaag caaatggtat tcaagattca ccatgtacac cacatcatcc
     4561 aaggatcaaa gttctgatcg taccagtctt tcttcagtgg gagcccagga ttctgaatct
     4621 acctctttaa cagatgaaga ggtctgccac gagttggaag gagccacttc ttgtcaggaa
     4681 agcagtgcca ctgcagggac taagggaatt gatttcagca gaacaagcct ggaaggttct
     4741 tcctccttag aaggatcctt gtccaagttt gccttacctg ggaagtcaga agtggcatct
     4801 tcctgcaaca cgagtaatac aaatatcttc cagaactatg caatggaggt tcttatctcg
     4861 agctgctctc gttgtagaac ctgtgattgt cttgtccatg atgaggaaat catggctggc
     4921 tggacagcag atgattcaaa tctcaataca acctgcccat tttgtggcaa tcttttcttg
     4981 ccctttctga acatcgaaat aagagattta agacgacctg gaagatactt tttgaagtca
     5041 agcccgtcta cagaaaatat gcattttcca tcctcctttt caaggcagac aaggcagtct
     5101 tgtatctcaa catcagcctc gggtcttgac acatctgttc tctctgttca agggaatttt
     5161 gatctaaata gcaaatcaaa gttgctcgaa aatacatgtg cccgaagtat tcagatccct
     5221 gctgatagat caagagcagc tttgtcaaaa tgtccagtat ttccaatggc caggagtgtt
     5281 agtacttatg gcaccttgga taaggaaaac aatggaggac agaagctcat tcctacaggc
     5341 agcctgccaa ctactttaca aggagctaca gattctttag gattagaatg gcacctccca
     5401 agtccagatc ctatcactgt tccatatctt agtcctttag tggtatggaa ggaacttgaa
     5461 agcttattgg aaaatgaagg tgatcatgca ataacagtgg cagactttgt ggaccatcat
     5521 ccaattgttt tttggaacct ggtgtggtat tttagacgtc ttgacttacc cagtaattta
     5581 cctggattga ttctttcttc tgagcattgt aacaagtatt caaagattcc tcgccactgt
     5641 atgtctgaag acagtaaata tgttttaata caaatgttgt gggacaatat gaaattacat
     5701 caggatccag gacagccgtt gtacatcctc tggaatgccc acagtcaaaa tcgtactctt
     5761 ttgtttgaga cccagaagta tccaatggtc catttattgc aaaaaggtga taattcattt
     5821 aaccaggaac tattgaaaaa tatggtaaaa agcattaaaa tgaatgacgt ctatggacca
     5881 atgagtcaga ttttagagac actgaataaa tgtcctcatt ttaaaagaca gaggagttta
     5941 tatagagaaa tactgtttct ctcacttgtg gcactgggaa gagaaaacat tgatatagat
     6001 gcatttgata aagaatacaa ggtggcatat gatcgtctca cacctagtca agtcaagagt
     6061 actcacaact gtgacagacc accaagtaca ggagtgatgg aatgtcgaaa aacctttgga
     6121 gaaccttatc tttaagatat gtactctgct cctttaaact caccagtaac tgaacctgta
     6181 atgaatacaa atctgataga accacctgtt ttgaacagaa aaagaggaga cagtaaactg
     6241 cagcatgtgc tgggggcagg ggccaggagc caggagggtg agatggagac cacacctgca
     6301 tcttttgcat cagcagccct tcaggaataa tcagggaact gtgaacatgg gagcttatct
     6361 gattgctaag gtacctgtcc caaccctcac tcccaaatat ctcattttag aaactcctct
     6421 gacttgggtc cttctgctgg cctccatgtg ttagctgtct gcatcagggg tggtaggagc
     6481 tccacccctc caaagagtcc taatccacag tgagctgcag gtgttttcca aggataaact
     6541 tcagtcccaa tcacatccac atcagaggct c
//
LOCUS       XM_032617659            8532 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 4A (DENND4A),
            transcript variant X3, mRNA.
ACCESSION   XM_032617659
VERSION     XM_032617659.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8532
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8532
                     /gene="DENND4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746283"
     CDS             382..6132
                     /gene="DENND4A"
                     /codon_start=1
                     /product="C-myc promoter-binding protein isoform X2"
                     /protein_id="XP_032473550.1"
                     /db_xref="GeneID:116746283"
                     /translation="MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEP
                     ITDVSVIIKSLGEEVPWDYTCIDVTPTGLSADLNNGSLVGPQIFLCYRRGRDKPPLTD
                     LGVLYDWKERLKQGCEVIQSTPYGRPANISGSTSSQRIYITYRRASENMTQNTLAVTD
                     ICIIIPSKGESPPHTFCKVDKNLNNSMWGSAVYLCYKKSVAKTNTISYKAGLICRYPQ
                     EDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGASAEKVYGAAIQFY
                     EPYSEENLTEKQRFLLGLASSADEKSDSSKTIHTSKCICLLSHWPFFDAFRKFLTFLY
                     RYSISGPHVLPIEKHISHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGG
                     KFSTLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYV
                     PLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDLDTNTISQTGDKKNVAWKV
                     LPKKPCKNLMNTLNNLHQQLAKLQQRPRDDGLMDLAMNDYDFNSGKRLHMIDLEIQEA
                     FLCFMASILKGYRSYLRPITQAPSETATDAASLFALQAFLRSRDRSHQKFYNMMTKTQ
                     MFIRFIEECSFVSDKDASLAFFDDCVDKVDMDKSGEVRLIELDESFKSEHTVFVTPPE
                     IPHLPNGEEPPLQYSYNGFPVLRNNLFERPEGFLQTRKSKLPSKSSSPSSPSPMFRRT
                     KQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFICLPAYVKVCHSKVRALKTAYDVL
                     KKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAV
                     LESTWPSRSRSGYFLWTKVRNVVLGVAQFKRALKKHTHLSQTTLSDGSDLDAVSHGSM
                     DSGHGTHTVEQAPFNTGLIKVYASDDRSSTGGQSDLGYNSLSKDEVRRGDTSTEDIQE
                     EEDKKGSDSSSLSESESAKGSADCLPKLNYQSSSSIVRLSAATNSADKTSGESTESSS
                     EPLLISSFEDTNETGNIHSRCFRKRHKSDNEPNLQQQISWGNRNRNLSGGVLMGLMLN
                     RINQEANPGDMVEKLGADARILSNVISKSTRPNSLDIGKPSLRSKRDSIEKESSDDDT
                     PFDGSNCLADKVDSPVIFDLEDLDNETDGSKVGYIAPQNPKRSQRLNSSFSVKPFEKT
                     DVATGFDPLSLLVAETEQQQKEEEEEEEDDSKSVSTPSARRDLAEEIVMYMNNMSSPL
                     TSRTPSIDLQRACDDKVTTKKSPTLVKACRRSSLPPNSPGPVRLTKSKSYSKSEDRPR
                     DRLWSSPAFSPTCPFREESQDALTHSSPSFNLDTLLVPKLDVLRNSMFTAGKGVAEKA
                     SKWYSRFTMYTTSSKDQSSDRTSLSSVGAQDSESTSLTDEEVCHELEGATSCQESSAT
                     AGTKGIDFSRTSLEGSSSLEGSLSKFALPGKSEVASSCNTSNTNIFQNYAMEVLISSC
                     SRCRTCDCLVHDEEIMAGWTADDSNLNTTCPFCGNLFLPFLNIEIRDLRRPGRYFLKS
                     SPSTENMHFPSSFSRQTRQSCISTSASGLDTSVLSVQGNFDLNSKSKLLENTCARSIQ
                     IPADRSRAALSKCPVFPMARSVSTYGTLDKENNGGQKLIPTGSLPTTLQGATDSLGLE
                     WHLPSPDPITVPYLSPLVVWKELESLLENEGDHAITVADFVDHHPIVFWNLVWYFRRL
                     DLPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNMKLHQDPGQPLYILWN
                     AHSQNRTLLFETQKYPMVHLLQKGDNSFNQELLKNMVKSIKMNDVYGPMSQILETLNK
                     CPHFKRQRSLYREILFLSLVALGRENIDIDAFDKEYKVAYDRLTPSQVKSTHNCDRPP
                     STGVMECRKTFGEPYL"
     misc_feature    961..1209
                     /gene="DENND4A"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    1306..1860
                     /gene="DENND4A"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2059..2280
                     /gene="DENND4A"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
     misc_feature    2806..2928
                     /gene="DENND4A"
                     /note="PPR repeat family; Region: PPR_2; pfam13041"
                     /db_xref="CDD:463778"
     misc_feature    2812..2901
                     /gene="DENND4A"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      
        1 gtcaagatgg cgccggtcgc agcggcggcg gccgcggcgg ctggaaccag aggaggcgga
       61 ggcagcggcg gccgcgaggg gagggggagt cccgtctgac tgagacggca ggcctgggcg
      121 ggcgggggtg ccgcgcaggg cggagcgccg ggctgggaat gagctaagcg ggttctgagc
      181 cccgcggcat tcagcctctc gtgtcccgac gccgctggtg agtggacgcg gcaccgctct
      241 ccaagctcga ccagctgctc gcgagggagc cagcggtgag tatttctcaa actccaaggc
      301 ttgcagaatt cacaaattga gatctggcat cattttcaga gagagacttt cagtaatgta
      361 tgtaaccttc tgtaatggaa gatgattgaa gataaggggc ctcgtgttgc tgactacttt
      421 gttgtagcgg gattaactga tgtttcaaag cctcttgaag aagaaattca cttcaatgat
      481 gcttgtcata aagtagctaa accaaaagaa cctatcacag atgtttcagt tattattaaa
      541 tctcttgggg aggaagtgcc atgggattac acgtgtattg atgttacccc aactggactg
      601 tcagctgatc tcaataatgg aagtcttgtg gggccgcaga ttttcctttg ctatagaaga
      661 ggaagagata agcctccact tacagatctg ggggttttat atgactggaa agaaagattg
      721 aaacaggggt gtgaagttat ccagagtact ccttacggac gccctgcaaa tattagcggc
      781 agtacctcat cacaaagaat ttatatcact taccgaagag cctctgaaaa catgactcag
      841 aatacgttgg ctgttacaga catatgtatt attataccca gtaaaggaga aagtccacca
      901 cacacattct gcaaagttga caagaatctc aataacagta tgtggggatc agcagtgtac
      961 ttatgttata aaaaatcggt ggcaaagact aacactatat cttacaaagc tggtctaatt
     1021 tgtagatacc ctcaagaaga ttatgagtca ttctcactcc cagaatctgt tcccctattt
     1081 tgtttaccaa tgggtgcaac tattgaatgt tggccatcaa atagcaaata ccctctccct
     1141 gtattttcta catttgtgtt aactggagcc tcagctgaaa aggtctatgg tgctgctatt
     1201 cagttttatg aaccatactc cgaagagaat ctcacagaaa aacagagatt tcttttgggt
     1261 ttagcatcat cagcagatga gaagtctgat agttccaaga caattcacac tagtaaatgc
     1321 atctgtcttc tctctcactg gccttttttt gatgcattca ggaagtttct gacttttcta
     1381 tatcgttatt ccatctctgg gcctcatgtc cttccaattg agaagcatat ttctcatttt
     1441 atgcataaag ttccttttcc atctcctcag agaccacgga ttttagttca gttatcacca
     1501 catgataatc tgattctcag tcagcctgtt tcttcacctc ttccgctaag cggtggcaag
     1561 ttttcaacac tacttcagaa tttaggccct gaaaatgctg tgacactact ggtgtttgca
     1621 gtaacggaac ataagattct tattcattcc ttacggcctt cagtgcttac tagtgtgaca
     1681 gaagcattag tgtctatgat tttccctttc cactggccat gcccctatgt tcctctctgc
     1741 ccactggctt tagcagatgt cttaagtgca ccatgtccgt tcatagtagg aattgattca
     1801 agatactttg atctctatga ccctccacca gatgtcagtt gtgttgacct agataccaac
     1861 acaatttctc aaactggtga taagaaaaat gtagcctgga aggtacttcc aaagaaacca
     1921 tgtaaaaatc tgatgaacac actgaataat ttgcaccagc agttggcaaa attgcagcag
     1981 agaccaagag acgatggact aatggactta gcaatgaatg attatgattt taattctgga
     2041 aagaggttgc acatgataga tttggaaatc caggaggcat ttttgtgttt catggcctct
     2101 attttaaaag gttatagatc atacttacga ccaataacac aagccccatc tgagacagcc
     2161 acagatgcag cctctctttt tgccctacaa gctttcttaa gaagccgtga ccggtcacat
     2221 cagaaattct ataacatgat gaccaaaaca caaatgttta ttcgcttcat tgaggaatgt
     2281 tcttttgtca gtgataaaga tgcaagcctg gcgttttttg atgattgtgt agataaagtg
     2341 gatatggaca agagtggtga agtgcgactt atagaactgg atgaatcttt caaaagtgaa
     2401 catactgttt ttgtaacacc acctgagatt ccccatctac ccaatggtga agaaccccct
     2461 ttacagtaca gctataatgg atttccagtt cttaggaaca atttatttga gagacctgaa
     2521 ggatttctac aaacccgaaa gagcaaattg ccttcaaaat caagtagtcc tagtagccct
     2581 tctcccatgt tcagaagaac aaaacaggaa attaaatcag cccataaaat tgccaagagg
     2641 tactcttcca ttcctcagat gtggtctagg tgtctactgc gtcactgtta cgggctgtgg
     2701 tttatttgtc tcccagctta tgtgaaagta tgtcattcaa aagtcagggc tctgaaaaca
     2761 gcctatgatg tgcttaaaaa aatgcagtca aagaagatgg atccacctga tgaggtgtgc
     2821 taccgcattc ttatgcagct ctgtggacag tatgatcagc cagtgcttgc agttcgagtg
     2881 ctgtttgaaa tgcagaaagc tggtattgac cccaatgcca taacttatgg ttattataat
     2941 aaggctgttt tggaaagtac ctggccttca aggagtcgta gtggctattt tctttggaca
     3001 aaagtgagga acgttgtttt gggagtagca cagttcaaaa gagctttaaa gaaacacaca
     3061 catttatcac aaacaactct ctcagatggc agtgacctgg atgctgttag tcatggcagc
     3121 atggatagtg gtcatgggac acacactgtg gagcaggcac cttttaatac gggtttaatc
     3181 aaagtgtatg cttctgatga tagatctagt acaggtggcc agtctgacct tggatataat
     3241 tcactatcta aggatgaagt tagaagaggg gatacatcta ctgaggacat tcaagaagaa
     3301 gaagataaga aagggagtga ttctagttcc ttgtcagaga gcgagagtgc aaagggaagt
     3361 gctgattgtc ttcctaagct caattatcaa agttcttcca gtatagttcg cctcagtgct
     3421 gcaactaaca gtgctgataa aacatcagga gaaagcacag aaagttcgtc tgagccgctc
     3481 ttaatatcat cttttgagga tacaaatgaa acaggaaaca ttcacagtag atgcttcaga
     3541 aaaagacata aaagtgacaa tgagcctaat ttgcagcagc aaatatcctg gggaaataga
     3601 aaccgaaatc ttagtggagg agtactaatg ggacttatgc tcaatagaat taaccaggaa
     3661 gcaaaccctg gagatatggt tgaaaaatta ggagctgatg caagaattct ttcaaatgta
     3721 atctcaaaaa gcacaagacc aaatagtctt gatattggaa agccatcttt aagatcaaag
     3781 agagacagta tagagaagga atctagtgat gatgatacac cttttgatgg ttctaattgt
     3841 ttggcagata aagtggattc tcctgttatt tttgacttag aagacttaga caatgaaaca
     3901 gatggatcaa aagtggggta cattgctcca caaaatccta agaggagtca acgcttgaat
     3961 agcagctttt cagtaaaacc tttcgaaaaa actgatgttg caacaggatt tgatcccctc
     4021 tctcttttgg ttgctgagac tgaacagcag caaaaagagg aggaggaaga ggaggaagat
     4081 gatagcaaaa gcgtttcgac accatctgct aggcgggatt tagctgaaga aattgtgatg
     4141 tatatgaata acatgagcag tcctttgaca agtcgaacac caagcattga tttacaacgg
     4201 gcctgtgatg ataaagtaac cactaagaaa agtccaacgt tggtcaaggc atgcagaaga
     4261 tctagcctgc ctcctaattc tcctgggcca gtgagactta ccaaatctaa aagttactca
     4321 aaaagcgaag acagaccaag ggatagactc tggtcttctc cagccttctc acctacttgc
     4381 ccatttagag aagaatctca agatgcatta acccattcat caccttcatt taatttagat
     4441 acactactag tacctaaact agatgttcta agaaacagta tgttcactgc tggaaaagga
     4501 gttgcagaga aagcaagcaa atggtattca agattcacca tgtacaccac atcatccaag
     4561 gatcaaagtt ctgatcgtac cagtctttct tcagtgggag cccaggattc tgaatctacc
     4621 tctttaacag atgaagaggt ctgccacgag ttggaaggag ccacttcttg tcaggaaagc
     4681 agtgccactg cagggactaa gggaattgat ttcagcagaa caagcctgga aggttcttcc
     4741 tccttagaag gatccttgtc caagtttgcc ttacctggga agtcagaagt ggcatcttcc
     4801 tgcaacacga gtaatacaaa tatcttccag aactatgcaa tggaggttct tatctcgagc
     4861 tgctctcgtt gtagaacctg tgattgtctt gtccatgatg aggaaatcat ggctggctgg
     4921 acagcagatg attcaaatct caatacaacc tgcccatttt gtggcaatct tttcttgccc
     4981 tttctgaaca tcgaaataag agatttaaga cgacctggaa gatacttttt gaagtcaagc
     5041 ccgtctacag aaaatatgca ttttccatcc tccttttcaa ggcagacaag gcagtcttgt
     5101 atctcaacat cagcctcggg tcttgacaca tctgttctct ctgttcaagg gaattttgat
     5161 ctaaatagca aatcaaagtt gctcgaaaat acatgtgccc gaagtattca gatccctgct
     5221 gatagatcaa gagcagcttt gtcaaaatgt ccagtatttc caatggccag gagtgttagt
     5281 acttatggca ccttggataa ggaaaacaat ggaggacaga agctcattcc tacaggcagc
     5341 ctgccaacta ctttacaagg agctacagat tctttaggat tagaatggca cctcccaagt
     5401 ccagatccta tcactgttcc atatcttagt cctttagtgg tatggaagga acttgaaagc
     5461 ttattggaaa atgaaggtga tcatgcaata acagtggcag actttgtgga ccatcatcca
     5521 attgtttttt ggaacctggt gtggtatttt agacgtcttg acttacccag taatttacct
     5581 ggattgattc tttcttctga gcattgtaac aagtattcaa agattcctcg ccactgtatg
     5641 tctgaagaca gtaaatatgt tttaatacaa atgttgtggg acaatatgaa attacatcag
     5701 gatccaggac agccgttgta catcctctgg aatgcccaca gtcaaaatcg tactcttttg
     5761 tttgagaccc agaagtatcc aatggtccat ttattgcaaa aaggtgataa ttcatttaac
     5821 caggaactat tgaaaaatat ggtaaaaagc attaaaatga atgacgtcta tggaccaatg
     5881 agtcagattt tagagacact gaataaatgt cctcatttta aaagacagag gagtttatat
     5941 agagaaatac tgtttctctc acttgtggca ctgggaagag aaaacattga tatagatgca
     6001 tttgataaag aatacaaggt ggcatatgat cgtctcacac ctagtcaagt caagagtact
     6061 cacaactgtg acagaccacc aagtacagga gtgatggaat gtcgaaaaac ctttggagaa
     6121 ccttatcttt aagatatgtg tgtgtgtttt ttcaatacgt attgtgtagt cagtgtataa
     6181 aataacactt ttagactcta accttttttc ttcagttttt gaaaatgcac ttgtaaatgg
     6241 ttcaggaagt tcagatagtt tatgtacaga gtgtctgaag aaaatactaa caagtgggag
     6301 agagctactt tgtttcccat ttctttgttt tttcttctcc cgtacaagta gttaagtatt
     6361 tttgtgatga aaaaatccat aaacaaaatt ggttcccata gaataagaca actgttttat
     6421 ggattctttt ggaagagaca gattgaaaaa tcatggatgg aacttaaaca aatgtaagaa
     6481 caaagtatct cctgttttca tagactactc aaatgttttg accgtgaagt tgtattatac
     6541 atattttaac ttgtttataa taagttgata tttttttaat ttttaaactt aatatagcaa
     6601 acaaaatgaa cttaatctta tgaagcaagg taattaagtg cttattttcc ttgtctgctg
     6661 ctatttgaag taattagtac agctgcagat ctctatatgt atatctatac tttttttact
     6721 acttggaaga atgattcaga aatgtcagcg ctagtgtcag tgttgtccta ggatcgcata
     6781 ttagtactcc tgtgcctgac tgcagtgggt gagtcatggc aagggtgtgc attgcccaga
     6841 ctgactcact gagccttgtg gaaggacagc cagagaggtt ccaaatctgc ttctgtaaaa
     6901 tcaggttcaa tataccatga ttccaaaatt gtctctattg ctaatagata catacaatac
     6961 acagggaaaa tagcttatag agccaaatat caatttaaat tttaatattc tacatgaaca
     7021 cttatgttag gaaatatgtc agacagttta tcccaaattc tacctttatt ttaatatcta
     7081 aaatattgga tatgatgcaa attgtagtat gtttatctgg aatatgacct attggagtat
     7141 tctgttaata ttatatatat atatattata tataaatatt caaaatattt tttcaaaagt
     7201 agaaaaataa taactctcta aaagtacagc cagatagaat ttcccatatt gaggaacctg
     7261 gctttttcaa taagccttca gaatctggtt tatggaatct aaaatccagc aatatccaga
     7321 aatagacagt aaactgaatg tttaagtacc atgggtatta aatagaatct taaaaaatat
     7381 ttgtagtcgc attatttcta atatcacttt ctttgggtaa ttctgataaa aaagtatcct
     7441 ttggccgtta gaattattta tagattttca gtgtgttcat gtgtgtgttt gcacacattg
     7501 tcataatgaa ggaattctct agccaatttc aaagaaggaa aaaatgaaag gtcctaaatt
     7561 agatgtgtag aagccggcag agttcaggac actttggact ggagatacct taaagtcctg
     7621 agactaagaa ccagttcagc tgtagaaaaa acacttttga gttcatccca ctagtgaata
     7681 gcaccaagct aaaacatttc acagctttct actctgggaa ataatggaga aagtttaaaa
     7741 atgtaaaatt ttagttcagt tagtttggcg ctgaacttgc ttacttgaaa agtctggtgc
     7801 tgtgcacatg tatctgcctc tcttttgtaa ataccactct tgtcttatcc ttccttccta
     7861 ttcaggtcca cgcttcacat tctaattcag tcttacgttc tctaagtcac agtcatttca
     7921 aaggagagaa acatttgata gatgaggctt ttggcattag tgacaaacat ccctccaaac
     7981 agaattctgg ggttctattc tggttttttg ttattgtttg tataagaaca gctttcacta
     8041 ttgattatct tttctttaac acaagcaatg tatatgaata acagtttatt gatttcaaat
     8101 atctgaccaa aaaaagtaag gtaaagccca ttctttatgg ttcagactca tttggaaaag
     8161 tgaatgtaat ttttatctcc ttcccctgac accaagtttt gtttctactt ttgactgggt
     8221 tttatttccc ctattttcaa tccccaggga atattatttg cacaaatcta ctctttaaaa
     8281 ataaaaccta aaacatgaat agagagtggt aaaccttgat caaaagaaaa ttaaaatgta
     8341 gatcatcctt tgaaataact ccatacaaac ttttcttcaa ttttatctct gttgaccata
     8401 cattttagag aatcatggcc aatcatgtta gagagaaata cccttttgct acattatctg
     8461 tcttttattt tcttactctt agttttgttt atctgtttac tagttgaaaa taaatcatgc
     8521 catgtcctgg ta
//
LOCUS       XM_032617668            8508 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 4A (DENND4A),
            transcript variant X4, mRNA.
ACCESSION   XM_032617668
VERSION     XM_032617668.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8508
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8508
                     /gene="DENND4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746283"
     CDS             382..6108
                     /gene="DENND4A"
                     /codon_start=1
                     /product="C-myc promoter-binding protein isoform X3"
                     /protein_id="XP_032473559.1"
                     /db_xref="GeneID:116746283"
                     /translation="MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEP
                     ITDVSVIIKSLGEEVPWDYTCIDVTPTGLSADLNNGSLVGPQIFLCYRRGRDKPPLTD
                     LGVLYDWKERLKQGCEVIQSTPYGRPANISGSTSSQRIYITYRRASENMTQNTLAVTD
                     ICIIIPSKGESPPHTFCKVDKNLNNSMWGSAVYLCYKKSVAKTNTISYKAGLICRYPQ
                     EDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGASAEKVYGAAIQFY
                     EPYSEENLTEKQRFLLGLASSADEKSDSSKTIHTSKCICLLSHWPFFDAFRKFLTFLY
                     RYSISGPHVLPIEKHISHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGG
                     KFSTLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYV
                     PLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDLDTNTISQTGDKKNVAWKV
                     LPKKPCKNLMNTLNNLHQQLAKLQQRPRDDGLMDLAMNDYDFNSGKRLHMIDLEIQEA
                     FLCFMASILKGYRSYLRPITQAPSETATDAASLFALQAFLRSRDRSHQKFYNMMTKTQ
                     MFIRFIEECSFVSDKDASLAFFDDCVDKVDMDKSGEVRLIELDESFKSEHTVFVTPPE
                     IPHLPNGEEPPLQYSYNGFPVLRNNLFERPEGFLQTRKSKLPSKSSSPSSPSPMFRRT
                     KQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFICLPAYVKVCHSKVRALKTAYDVL
                     KKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAV
                     LESTWPSRSRSGYFLWTKVRNVVLGVAQFKRALKKHTHLSQTTLSADGSDLDAVSHGS
                     MDSGHGTHTVEQAPFNTGLIKVYASDDRSSTGGQSDLGYNSLSKDEVRRGDTSTEDIQ
                     EEEDKKGSDSSSLSESESAKGSADCLPKLNYQSSSSIVRLSAATNSADKTSGESTESS
                     SEPLLISSFEDTNETGNIHSRCFRKRHKSDNEPNLQQQISWGNRNRNLSGGVLMGLML
                     NRINQEANPGDMVEKLGADARILSNVISKSTRPNSLDIGKPSLRSKRDSIEKESSDDD
                     TPFDGSNCLADKVDSPVIFDLEDLDNETDGSKVGYIAPQNPKRSQRLNSSFSVKPFEK
                     TDVATGFDPLSLLVAETEQQQKEEEEEEEDDSKSVSTPSARRDLAEEIVMYMNNMSSP
                     LTSRTPSIDLQRACDDKVTTKKSPTLVKACRRSSLPPNSPGPVRLTKSKSYSKSEDRP
                     RDRLWSSPAFSPTCPFREESQDALTHSSPSFNLDTLLVPKLDVLRNSMFTAGKGVAEK
                     ASKWYSRFTMYTTSSKDQSSDRTSLSSVGAQDSESTSLTDEEVCHELEGATSCQESSA
                     TAGTKGIDFSRTSLEGSSSLEGSLSKFALPGKSEVASSCNTSNTNIFQNYAMEVLISS
                     CSRCRTCDCLVHDEEIMAGWTADDSNLNTTCPFCGNLFLPFLNIEIRDLRRPGRYFLK
                     SSPSTENMHFPSSFSRQTRQSCISTSASGLDTSVLSVQGNFDLNSKSKLLENTCARSI
                     QIPADRSRAALSKCPVFPMARSVSTYGTLDKENNGGQKLIPTGSLPTTLQGATDSLGL
                     EWHLPSPDPITVPYLSPLVVWKELESLLENEGDHAITVADFVDHHPIVFWNLVWYFRR
                     LDLPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNMKLHQDPGQPLYILW
                     NAHTQKYPMVHLLQKGDNSFNQELLKNMVKSIKMNDVYGPMSQILETLNKCPHFKRQR
                     SLYREILFLSLVALGRENIDIDAFDKEYKVAYDRLTPSQVKSTHNCDRPPSTGVMECR
                     KTFGEPYL"
     misc_feature    961..1209
                     /gene="DENND4A"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    1306..1860
                     /gene="DENND4A"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2059..2280
                     /gene="DENND4A"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
     misc_feature    2806..2928
                     /gene="DENND4A"
                     /note="PPR repeat family; Region: PPR_2; pfam13041"
                     /db_xref="CDD:463778"
     misc_feature    2812..2901
                     /gene="DENND4A"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      
        1 gtcaagatgg cgccggtcgc agcggcggcg gccgcggcgg ctggaaccag aggaggcgga
       61 ggcagcggcg gccgcgaggg gagggggagt cccgtctgac tgagacggca ggcctgggcg
      121 ggcgggggtg ccgcgcaggg cggagcgccg ggctgggaat gagctaagcg ggttctgagc
      181 cccgcggcat tcagcctctc gtgtcccgac gccgctggtg agtggacgcg gcaccgctct
      241 ccaagctcga ccagctgctc gcgagggagc cagcggtgag tatttctcaa actccaaggc
      301 ttgcagaatt cacaaattga gatctggcat cattttcaga gagagacttt cagtaatgta
      361 tgtaaccttc tgtaatggaa gatgattgaa gataaggggc ctcgtgttgc tgactacttt
      421 gttgtagcgg gattaactga tgtttcaaag cctcttgaag aagaaattca cttcaatgat
      481 gcttgtcata aagtagctaa accaaaagaa cctatcacag atgtttcagt tattattaaa
      541 tctcttgggg aggaagtgcc atgggattac acgtgtattg atgttacccc aactggactg
      601 tcagctgatc tcaataatgg aagtcttgtg gggccgcaga ttttcctttg ctatagaaga
      661 ggaagagata agcctccact tacagatctg ggggttttat atgactggaa agaaagattg
      721 aaacaggggt gtgaagttat ccagagtact ccttacggac gccctgcaaa tattagcggc
      781 agtacctcat cacaaagaat ttatatcact taccgaagag cctctgaaaa catgactcag
      841 aatacgttgg ctgttacaga catatgtatt attataccca gtaaaggaga aagtccacca
      901 cacacattct gcaaagttga caagaatctc aataacagta tgtggggatc agcagtgtac
      961 ttatgttata aaaaatcggt ggcaaagact aacactatat cttacaaagc tggtctaatt
     1021 tgtagatacc ctcaagaaga ttatgagtca ttctcactcc cagaatctgt tcccctattt
     1081 tgtttaccaa tgggtgcaac tattgaatgt tggccatcaa atagcaaata ccctctccct
     1141 gtattttcta catttgtgtt aactggagcc tcagctgaaa aggtctatgg tgctgctatt
     1201 cagttttatg aaccatactc cgaagagaat ctcacagaaa aacagagatt tcttttgggt
     1261 ttagcatcat cagcagatga gaagtctgat agttccaaga caattcacac tagtaaatgc
     1321 atctgtcttc tctctcactg gccttttttt gatgcattca ggaagtttct gacttttcta
     1381 tatcgttatt ccatctctgg gcctcatgtc cttccaattg agaagcatat ttctcatttt
     1441 atgcataaag ttccttttcc atctcctcag agaccacgga ttttagttca gttatcacca
     1501 catgataatc tgattctcag tcagcctgtt tcttcacctc ttccgctaag cggtggcaag
     1561 ttttcaacac tacttcagaa tttaggccct gaaaatgctg tgacactact ggtgtttgca
     1621 gtaacggaac ataagattct tattcattcc ttacggcctt cagtgcttac tagtgtgaca
     1681 gaagcattag tgtctatgat tttccctttc cactggccat gcccctatgt tcctctctgc
     1741 ccactggctt tagcagatgt cttaagtgca ccatgtccgt tcatagtagg aattgattca
     1801 agatactttg atctctatga ccctccacca gatgtcagtt gtgttgacct agataccaac
     1861 acaatttctc aaactggtga taagaaaaat gtagcctgga aggtacttcc aaagaaacca
     1921 tgtaaaaatc tgatgaacac actgaataat ttgcaccagc agttggcaaa attgcagcag
     1981 agaccaagag acgatggact aatggactta gcaatgaatg attatgattt taattctgga
     2041 aagaggttgc acatgataga tttggaaatc caggaggcat ttttgtgttt catggcctct
     2101 attttaaaag gttatagatc atacttacga ccaataacac aagccccatc tgagacagcc
     2161 acagatgcag cctctctttt tgccctacaa gctttcttaa gaagccgtga ccggtcacat
     2221 cagaaattct ataacatgat gaccaaaaca caaatgttta ttcgcttcat tgaggaatgt
     2281 tcttttgtca gtgataaaga tgcaagcctg gcgttttttg atgattgtgt agataaagtg
     2341 gatatggaca agagtggtga agtgcgactt atagaactgg atgaatcttt caaaagtgaa
     2401 catactgttt ttgtaacacc acctgagatt ccccatctac ccaatggtga agaaccccct
     2461 ttacagtaca gctataatgg atttccagtt cttaggaaca atttatttga gagacctgaa
     2521 ggatttctac aaacccgaaa gagcaaattg ccttcaaaat caagtagtcc tagtagccct
     2581 tctcccatgt tcagaagaac aaaacaggaa attaaatcag cccataaaat tgccaagagg
     2641 tactcttcca ttcctcagat gtggtctagg tgtctactgc gtcactgtta cgggctgtgg
     2701 tttatttgtc tcccagctta tgtgaaagta tgtcattcaa aagtcagggc tctgaaaaca
     2761 gcctatgatg tgcttaaaaa aatgcagtca aagaagatgg atccacctga tgaggtgtgc
     2821 taccgcattc ttatgcagct ctgtggacag tatgatcagc cagtgcttgc agttcgagtg
     2881 ctgtttgaaa tgcagaaagc tggtattgac cccaatgcca taacttatgg ttattataat
     2941 aaggctgttt tggaaagtac ctggccttca aggagtcgta gtggctattt tctttggaca
     3001 aaagtgagga acgttgtttt gggagtagca cagttcaaaa gagctttaaa gaaacacaca
     3061 catttatcac aaacaactct ctcagcagat ggcagtgacc tggatgctgt tagtcatggc
     3121 agcatggata gtggtcatgg gacacacact gtggagcagg caccttttaa tacgggttta
     3181 atcaaagtgt atgcttctga tgatagatct agtacaggtg gccagtctga ccttggatat
     3241 aattcactat ctaaggatga agttagaaga ggggatacat ctactgagga cattcaagaa
     3301 gaagaagata agaaagggag tgattctagt tccttgtcag agagcgagag tgcaaaggga
     3361 agtgctgatt gtcttcctaa gctcaattat caaagttctt ccagtatagt tcgcctcagt
     3421 gctgcaacta acagtgctga taaaacatca ggagaaagca cagaaagttc gtctgagccg
     3481 ctcttaatat catcttttga ggatacaaat gaaacaggaa acattcacag tagatgcttc
     3541 agaaaaagac ataaaagtga caatgagcct aatttgcagc agcaaatatc ctggggaaat
     3601 agaaaccgaa atcttagtgg aggagtacta atgggactta tgctcaatag aattaaccag
     3661 gaagcaaacc ctggagatat ggttgaaaaa ttaggagctg atgcaagaat tctttcaaat
     3721 gtaatctcaa aaagcacaag accaaatagt cttgatattg gaaagccatc tttaagatca
     3781 aagagagaca gtatagagaa ggaatctagt gatgatgata caccttttga tggttctaat
     3841 tgtttggcag ataaagtgga ttctcctgtt atttttgact tagaagactt agacaatgaa
     3901 acagatggat caaaagtggg gtacattgct ccacaaaatc ctaagaggag tcaacgcttg
     3961 aatagcagct tttcagtaaa acctttcgaa aaaactgatg ttgcaacagg atttgatccc
     4021 ctctctcttt tggttgctga gactgaacag cagcaaaaag aggaggagga agaggaggaa
     4081 gatgatagca aaagcgtttc gacaccatct gctaggcggg atttagctga agaaattgtg
     4141 atgtatatga ataacatgag cagtcctttg acaagtcgaa caccaagcat tgatttacaa
     4201 cgggcctgtg atgataaagt aaccactaag aaaagtccaa cgttggtcaa ggcatgcaga
     4261 agatctagcc tgcctcctaa ttctcctggg ccagtgagac ttaccaaatc taaaagttac
     4321 tcaaaaagcg aagacagacc aagggataga ctctggtctt ctccagcctt ctcacctact
     4381 tgcccattta gagaagaatc tcaagatgca ttaacccatt catcaccttc atttaattta
     4441 gatacactac tagtacctaa actagatgtt ctaagaaaca gtatgttcac tgctggaaaa
     4501 ggagttgcag agaaagcaag caaatggtat tcaagattca ccatgtacac cacatcatcc
     4561 aaggatcaaa gttctgatcg taccagtctt tcttcagtgg gagcccagga ttctgaatct
     4621 acctctttaa cagatgaaga ggtctgccac gagttggaag gagccacttc ttgtcaggaa
     4681 agcagtgcca ctgcagggac taagggaatt gatttcagca gaacaagcct ggaaggttct
     4741 tcctccttag aaggatcctt gtccaagttt gccttacctg ggaagtcaga agtggcatct
     4801 tcctgcaaca cgagtaatac aaatatcttc cagaactatg caatggaggt tcttatctcg
     4861 agctgctctc gttgtagaac ctgtgattgt cttgtccatg atgaggaaat catggctggc
     4921 tggacagcag atgattcaaa tctcaataca acctgcccat tttgtggcaa tcttttcttg
     4981 ccctttctga acatcgaaat aagagattta agacgacctg gaagatactt tttgaagtca
     5041 agcccgtcta cagaaaatat gcattttcca tcctcctttt caaggcagac aaggcagtct
     5101 tgtatctcaa catcagcctc gggtcttgac acatctgttc tctctgttca agggaatttt
     5161 gatctaaata gcaaatcaaa gttgctcgaa aatacatgtg cccgaagtat tcagatccct
     5221 gctgatagat caagagcagc tttgtcaaaa tgtccagtat ttccaatggc caggagtgtt
     5281 agtacttatg gcaccttgga taaggaaaac aatggaggac agaagctcat tcctacaggc
     5341 agcctgccaa ctactttaca aggagctaca gattctttag gattagaatg gcacctccca
     5401 agtccagatc ctatcactgt tccatatctt agtcctttag tggtatggaa ggaacttgaa
     5461 agcttattgg aaaatgaagg tgatcatgca ataacagtgg cagactttgt ggaccatcat
     5521 ccaattgttt tttggaacct ggtgtggtat tttagacgtc ttgacttacc cagtaattta
     5581 cctggattga ttctttcttc tgagcattgt aacaagtatt caaagattcc tcgccactgt
     5641 atgtctgaag acagtaaata tgttttaata caaatgttgt gggacaatat gaaattacat
     5701 caggatccag gacagccgtt gtacatcctc tggaatgccc acacccagaa gtatccaatg
     5761 gtccatttat tgcaaaaagg tgataattca tttaaccagg aactattgaa aaatatggta
     5821 aaaagcatta aaatgaatga cgtctatgga ccaatgagtc agattttaga gacactgaat
     5881 aaatgtcctc attttaaaag acagaggagt ttatatagag aaatactgtt tctctcactt
     5941 gtggcactgg gaagagaaaa cattgatata gatgcatttg ataaagaata caaggtggca
     6001 tatgatcgtc tcacacctag tcaagtcaag agtactcaca actgtgacag accaccaagt
     6061 acaggagtga tggaatgtcg aaaaaccttt ggagaacctt atctttaaga tatgtgtgtg
     6121 tgttttttca atacgtattg tgtagtcagt gtataaaata acacttttag actctaacct
     6181 tttttcttca gtttttgaaa atgcacttgt aaatggttca ggaagttcag atagtttatg
     6241 tacagagtgt ctgaagaaaa tactaacaag tgggagagag ctactttgtt tcccatttct
     6301 ttgttttttc ttctcccgta caagtagtta agtatttttg tgatgaaaaa atccataaac
     6361 aaaattggtt cccatagaat aagacaactg ttttatggat tcttttggaa gagacagatt
     6421 gaaaaatcat ggatggaact taaacaaatg taagaacaaa gtatctcctg ttttcataga
     6481 ctactcaaat gttttgaccg tgaagttgta ttatacatat tttaacttgt ttataataag
     6541 ttgatatttt tttaattttt aaacttaata tagcaaacaa aatgaactta atcttatgaa
     6601 gcaaggtaat taagtgctta ttttccttgt ctgctgctat ttgaagtaat tagtacagct
     6661 gcagatctct atatgtatat ctatactttt tttactactt ggaagaatga ttcagaaatg
     6721 tcagcgctag tgtcagtgtt gtcctaggat cgcatattag tactcctgtg cctgactgca
     6781 gtgggtgagt catggcaagg gtgtgcattg cccagactga ctcactgagc cttgtggaag
     6841 gacagccaga gaggttccaa atctgcttct gtaaaatcag gttcaatata ccatgattcc
     6901 aaaattgtct ctattgctaa tagatacata caatacacag ggaaaatagc ttatagagcc
     6961 aaatatcaat ttaaatttta atattctaca tgaacactta tgttaggaaa tatgtcagac
     7021 agtttatccc aaattctacc tttattttaa tatctaaaat attggatatg atgcaaattg
     7081 tagtatgttt atctggaata tgacctattg gagtattctg ttaatattat atatatatat
     7141 attatatata aatattcaaa atattttttc aaaagtagaa aaataataac tctctaaaag
     7201 tacagccaga tagaatttcc catattgagg aacctggctt tttcaataag ccttcagaat
     7261 ctggtttatg gaatctaaaa tccagcaata tccagaaata gacagtaaac tgaatgttta
     7321 agtaccatgg gtattaaata gaatcttaaa aaatatttgt agtcgcatta tttctaatat
     7381 cactttcttt gggtaattct gataaaaaag tatcctttgg ccgttagaat tatttataga
     7441 ttttcagtgt gttcatgtgt gtgtttgcac acattgtcat aatgaaggaa ttctctagcc
     7501 aatttcaaag aaggaaaaaa tgaaaggtcc taaattagat gtgtagaagc cggcagagtt
     7561 caggacactt tggactggag ataccttaaa gtcctgagac taagaaccag ttcagctgta
     7621 gaaaaaacac ttttgagttc atcccactag tgaatagcac caagctaaaa catttcacag
     7681 ctttctactc tgggaaataa tggagaaagt ttaaaaatgt aaaattttag ttcagttagt
     7741 ttggcgctga acttgcttac ttgaaaagtc tggtgctgtg cacatgtatc tgcctctctt
     7801 ttgtaaatac cactcttgtc ttatccttcc ttcctattca ggtccacgct tcacattcta
     7861 attcagtctt acgttctcta agtcacagtc atttcaaagg agagaaacat ttgatagatg
     7921 aggcttttgg cattagtgac aaacatccct ccaaacagaa ttctggggtt ctattctggt
     7981 tttttgttat tgtttgtata agaacagctt tcactattga ttatcttttc tttaacacaa
     8041 gcaatgtata tgaataacag tttattgatt tcaaatatct gaccaaaaaa agtaaggtaa
     8101 agcccattct ttatggttca gactcatttg gaaaagtgaa tgtaattttt atctccttcc
     8161 cctgacacca agttttgttt ctacttttga ctgggtttta tttcccctat tttcaatccc
     8221 cagggaatat tatttgcaca aatctactct ttaaaaataa aacctaaaac atgaatagag
     8281 agtggtaaac cttgatcaaa agaaaattaa aatgtagatc atcctttgaa ataactccat
     8341 acaaactttt cttcaatttt atctctgttg accatacatt ttagagaatc atggccaatc
     8401 atgttagaga gaaataccct tttgctacat tatctgtctt ttattttctt actcttagtt
     8461 ttgtttatct gtttactagt tgaaaataaa tcatgccatg tcctggta
//
LOCUS       XM_032617676            6679 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 4A (DENND4A),
            transcript variant X5, mRNA.
ACCESSION   XM_032617676
VERSION     XM_032617676.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6679
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6679
                     /gene="DENND4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746283"
     CDS             382..6105
                     /gene="DENND4A"
                     /codon_start=1
                     /product="C-myc promoter-binding protein isoform X4"
                     /protein_id="XP_032473567.1"
                     /db_xref="GeneID:116746283"
                     /translation="MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEP
                     ITDVSVIIKSLGEEVPWDYTCIDVTPTGLSADLNNGSLVGPQIFLCYRRGRDKPPLTD
                     LGVLYDWKERLKQGCEVIQSTPYGRPANISGSTSSQRIYITYRRASENMTQNTLAVTD
                     ICIIIPSKGESPPHTFCKVDKNLNNSMWGSAVYLCYKKSVAKTNTISYKAGLICRYPQ
                     EDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGASAEKVYGAAIQFY
                     EPYSEENLTEKQRFLLGLASSADEKSDSSKTIHTSKCICLLSHWPFFDAFRKFLTFLY
                     RYSISGPHVLPIEKHISHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGG
                     KFSTLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYV
                     PLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDLDTNTISQTGDKKNVAWKV
                     LPKKPCKNLMNTLNNLHQQLAKLQQRPRDDGLMDLAMNDYDFNSGKRLHMIDLEIQEA
                     FLCFMASILKGYRSYLRPITQAPSETATDAASLFALQAFLRSRDRSHQKFYNMMTKTQ
                     MFIRFIEECSFVSDKDASLAFFDDCVDKVDMDKSGEVRLIELDESFKSEHTVFVTPPE
                     IPHLPNGEEPPLQYSYNGFPVLRNNLFERPEGFLQTRKSKLPSKSSSPSSPSPMFRRT
                     KQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFICLPAYVKVCHSKVRALKTAYDVL
                     KKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAV
                     LESTWPSRSRSGYFLWTKVRNVVLGVAQFKRALKKHTHLSQTTLSDGSDLDAVSHGSM
                     DSGHGTHTVEQAPFNTGLIKVYASDDRSSTGGQSDLGYNSLSKDEVRRGDTSTEDIQE
                     EEDKKGSDSSSLSESESAKGSADCLPKLNYQSSSSIVRLSAATNSADKTSGESTESSS
                     EPLLISSFEDTNETGNIHSRCFRKRHKSDNEPNLQQQISWGNRNRNLSGGVLMGLMLN
                     RINQEANPGDMVEKLGADARILSNVISKSTRPNSLDIGKPSLRSKRDSIEKESSDDDT
                     PFDGSNCLADKVDSPVIFDLEDLDNETDGSKVGYIAPQNPKRSQRLNSSFSVKPFEKT
                     DVATGFDPLSLLVAETEQQQKEEEEEEEDDSKSVSTPSARRDLAEEIVMYMNNMSSPL
                     TSRTPSIDLQRACDDKVTTKKSPTLVKACRRSSLPPNSPGPVRLTKSKSYSKSEDRPR
                     DRLWSSPAFSPTCPFREESQDALTHSSPSFNLDTLLVPKLDVLRNSMFTAGKGVAEKA
                     SKWYSRFTMYTTSSKDQSSDRTSLSSVGAQDSESTSLTDEEVCHELEGATSCQESSAT
                     AGTKGIDFSRTSLEGSSSLEGSLSKFALPGKSEVASSCNTSNTNIFQNYAMEVLISSC
                     SRCRTCDCLVHDEEIMAGWTADDSNLNTTCPFCGNLFLPFLNIEIRDLRRPGRYFLKS
                     SPSTENMHFPSSFSRQTRQSCISTSASGLDTSVLSVQGNFDLNSKSKLLENTCARSIQ
                     IPADRSRAALSKCPVFPMARSVSTYGTLDKENNGGQKLIPTGSLPTTLQGATDSLGLE
                     WHLPSPDPITVPYLSPLVVWKELESLLENEGDHAITVADFVDHHPIVFWNLVWYFRRL
                     DLPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNMKLHQDPGQPLYILWN
                     AHTQKYPMVHLLQKGDNSFNQELLKNMVKSIKMNDVYGPMSQILETLNKCPHFKRQRS
                     LYREILFLSLVALGRENIDIDAFDKEYKVAYDRLTPSQVKSTHNCDRPPSTGVMECRK
                     TFGEPYL"
     misc_feature    961..1209
                     /gene="DENND4A"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    1306..1860
                     /gene="DENND4A"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2059..2280
                     /gene="DENND4A"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
     misc_feature    2806..2928
                     /gene="DENND4A"
                     /note="PPR repeat family; Region: PPR_2; pfam13041"
                     /db_xref="CDD:463778"
     misc_feature    2812..2901
                     /gene="DENND4A"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      
        1 gtcaagatgg cgccggtcgc agcggcggcg gccgcggcgg ctggaaccag aggaggcgga
       61 ggcagcggcg gccgcgaggg gagggggagt cccgtctgac tgagacggca ggcctgggcg
      121 ggcgggggtg ccgcgcaggg cggagcgccg ggctgggaat gagctaagcg ggttctgagc
      181 cccgcggcat tcagcctctc gtgtcccgac gccgctggtg agtggacgcg gcaccgctct
      241 ccaagctcga ccagctgctc gcgagggagc cagcggtgag tatttctcaa actccaaggc
      301 ttgcagaatt cacaaattga gatctggcat cattttcaga gagagacttt cagtaatgta
      361 tgtaaccttc tgtaatggaa gatgattgaa gataaggggc ctcgtgttgc tgactacttt
      421 gttgtagcgg gattaactga tgtttcaaag cctcttgaag aagaaattca cttcaatgat
      481 gcttgtcata aagtagctaa accaaaagaa cctatcacag atgtttcagt tattattaaa
      541 tctcttgggg aggaagtgcc atgggattac acgtgtattg atgttacccc aactggactg
      601 tcagctgatc tcaataatgg aagtcttgtg gggccgcaga ttttcctttg ctatagaaga
      661 ggaagagata agcctccact tacagatctg ggggttttat atgactggaa agaaagattg
      721 aaacaggggt gtgaagttat ccagagtact ccttacggac gccctgcaaa tattagcggc
      781 agtacctcat cacaaagaat ttatatcact taccgaagag cctctgaaaa catgactcag
      841 aatacgttgg ctgttacaga catatgtatt attataccca gtaaaggaga aagtccacca
      901 cacacattct gcaaagttga caagaatctc aataacagta tgtggggatc agcagtgtac
      961 ttatgttata aaaaatcggt ggcaaagact aacactatat cttacaaagc tggtctaatt
     1021 tgtagatacc ctcaagaaga ttatgagtca ttctcactcc cagaatctgt tcccctattt
     1081 tgtttaccaa tgggtgcaac tattgaatgt tggccatcaa atagcaaata ccctctccct
     1141 gtattttcta catttgtgtt aactggagcc tcagctgaaa aggtctatgg tgctgctatt
     1201 cagttttatg aaccatactc cgaagagaat ctcacagaaa aacagagatt tcttttgggt
     1261 ttagcatcat cagcagatga gaagtctgat agttccaaga caattcacac tagtaaatgc
     1321 atctgtcttc tctctcactg gccttttttt gatgcattca ggaagtttct gacttttcta
     1381 tatcgttatt ccatctctgg gcctcatgtc cttccaattg agaagcatat ttctcatttt
     1441 atgcataaag ttccttttcc atctcctcag agaccacgga ttttagttca gttatcacca
     1501 catgataatc tgattctcag tcagcctgtt tcttcacctc ttccgctaag cggtggcaag
     1561 ttttcaacac tacttcagaa tttaggccct gaaaatgctg tgacactact ggtgtttgca
     1621 gtaacggaac ataagattct tattcattcc ttacggcctt cagtgcttac tagtgtgaca
     1681 gaagcattag tgtctatgat tttccctttc cactggccat gcccctatgt tcctctctgc
     1741 ccactggctt tagcagatgt cttaagtgca ccatgtccgt tcatagtagg aattgattca
     1801 agatactttg atctctatga ccctccacca gatgtcagtt gtgttgacct agataccaac
     1861 acaatttctc aaactggtga taagaaaaat gtagcctgga aggtacttcc aaagaaacca
     1921 tgtaaaaatc tgatgaacac actgaataat ttgcaccagc agttggcaaa attgcagcag
     1981 agaccaagag acgatggact aatggactta gcaatgaatg attatgattt taattctgga
     2041 aagaggttgc acatgataga tttggaaatc caggaggcat ttttgtgttt catggcctct
     2101 attttaaaag gttatagatc atacttacga ccaataacac aagccccatc tgagacagcc
     2161 acagatgcag cctctctttt tgccctacaa gctttcttaa gaagccgtga ccggtcacat
     2221 cagaaattct ataacatgat gaccaaaaca caaatgttta ttcgcttcat tgaggaatgt
     2281 tcttttgtca gtgataaaga tgcaagcctg gcgttttttg atgattgtgt agataaagtg
     2341 gatatggaca agagtggtga agtgcgactt atagaactgg atgaatcttt caaaagtgaa
     2401 catactgttt ttgtaacacc acctgagatt ccccatctac ccaatggtga agaaccccct
     2461 ttacagtaca gctataatgg atttccagtt cttaggaaca atttatttga gagacctgaa
     2521 ggatttctac aaacccgaaa gagcaaattg ccttcaaaat caagtagtcc tagtagccct
     2581 tctcccatgt tcagaagaac aaaacaggaa attaaatcag cccataaaat tgccaagagg
     2641 tactcttcca ttcctcagat gtggtctagg tgtctactgc gtcactgtta cgggctgtgg
     2701 tttatttgtc tcccagctta tgtgaaagta tgtcattcaa aagtcagggc tctgaaaaca
     2761 gcctatgatg tgcttaaaaa aatgcagtca aagaagatgg atccacctga tgaggtgtgc
     2821 taccgcattc ttatgcagct ctgtggacag tatgatcagc cagtgcttgc agttcgagtg
     2881 ctgtttgaaa tgcagaaagc tggtattgac cccaatgcca taacttatgg ttattataat
     2941 aaggctgttt tggaaagtac ctggccttca aggagtcgta gtggctattt tctttggaca
     3001 aaagtgagga acgttgtttt gggagtagca cagttcaaaa gagctttaaa gaaacacaca
     3061 catttatcac aaacaactct ctcagatggc agtgacctgg atgctgttag tcatggcagc
     3121 atggatagtg gtcatgggac acacactgtg gagcaggcac cttttaatac gggtttaatc
     3181 aaagtgtatg cttctgatga tagatctagt acaggtggcc agtctgacct tggatataat
     3241 tcactatcta aggatgaagt tagaagaggg gatacatcta ctgaggacat tcaagaagaa
     3301 gaagataaga aagggagtga ttctagttcc ttgtcagaga gcgagagtgc aaagggaagt
     3361 gctgattgtc ttcctaagct caattatcaa agttcttcca gtatagttcg cctcagtgct
     3421 gcaactaaca gtgctgataa aacatcagga gaaagcacag aaagttcgtc tgagccgctc
     3481 ttaatatcat cttttgagga tacaaatgaa acaggaaaca ttcacagtag atgcttcaga
     3541 aaaagacata aaagtgacaa tgagcctaat ttgcagcagc aaatatcctg gggaaataga
     3601 aaccgaaatc ttagtggagg agtactaatg ggacttatgc tcaatagaat taaccaggaa
     3661 gcaaaccctg gagatatggt tgaaaaatta ggagctgatg caagaattct ttcaaatgta
     3721 atctcaaaaa gcacaagacc aaatagtctt gatattggaa agccatcttt aagatcaaag
     3781 agagacagta tagagaagga atctagtgat gatgatacac cttttgatgg ttctaattgt
     3841 ttggcagata aagtggattc tcctgttatt tttgacttag aagacttaga caatgaaaca
     3901 gatggatcaa aagtggggta cattgctcca caaaatccta agaggagtca acgcttgaat
     3961 agcagctttt cagtaaaacc tttcgaaaaa actgatgttg caacaggatt tgatcccctc
     4021 tctcttttgg ttgctgagac tgaacagcag caaaaagagg aggaggaaga ggaggaagat
     4081 gatagcaaaa gcgtttcgac accatctgct aggcgggatt tagctgaaga aattgtgatg
     4141 tatatgaata acatgagcag tcctttgaca agtcgaacac caagcattga tttacaacgg
     4201 gcctgtgatg ataaagtaac cactaagaaa agtccaacgt tggtcaaggc atgcagaaga
     4261 tctagcctgc ctcctaattc tcctgggcca gtgagactta ccaaatctaa aagttactca
     4321 aaaagcgaag acagaccaag ggatagactc tggtcttctc cagccttctc acctacttgc
     4381 ccatttagag aagaatctca agatgcatta acccattcat caccttcatt taatttagat
     4441 acactactag tacctaaact agatgttcta agaaacagta tgttcactgc tggaaaagga
     4501 gttgcagaga aagcaagcaa atggtattca agattcacca tgtacaccac atcatccaag
     4561 gatcaaagtt ctgatcgtac cagtctttct tcagtgggag cccaggattc tgaatctacc
     4621 tctttaacag atgaagaggt ctgccacgag ttggaaggag ccacttcttg tcaggaaagc
     4681 agtgccactg cagggactaa gggaattgat ttcagcagaa caagcctgga aggttcttcc
     4741 tccttagaag gatccttgtc caagtttgcc ttacctggga agtcagaagt ggcatcttcc
     4801 tgcaacacga gtaatacaaa tatcttccag aactatgcaa tggaggttct tatctcgagc
     4861 tgctctcgtt gtagaacctg tgattgtctt gtccatgatg aggaaatcat ggctggctgg
     4921 acagcagatg attcaaatct caatacaacc tgcccatttt gtggcaatct tttcttgccc
     4981 tttctgaaca tcgaaataag agatttaaga cgacctggaa gatacttttt gaagtcaagc
     5041 ccgtctacag aaaatatgca ttttccatcc tccttttcaa ggcagacaag gcagtcttgt
     5101 atctcaacat cagcctcggg tcttgacaca tctgttctct ctgttcaagg gaattttgat
     5161 ctaaatagca aatcaaagtt gctcgaaaat acatgtgccc gaagtattca gatccctgct
     5221 gatagatcaa gagcagcttt gtcaaaatgt ccagtatttc caatggccag gagtgttagt
     5281 acttatggca ccttggataa ggaaaacaat ggaggacaga agctcattcc tacaggcagc
     5341 ctgccaacta ctttacaagg agctacagat tctttaggat tagaatggca cctcccaagt
     5401 ccagatccta tcactgttcc atatcttagt cctttagtgg tatggaagga acttgaaagc
     5461 ttattggaaa atgaaggtga tcatgcaata acagtggcag actttgtgga ccatcatcca
     5521 attgtttttt ggaacctggt gtggtatttt agacgtcttg acttacccag taatttacct
     5581 ggattgattc tttcttctga gcattgtaac aagtattcaa agattcctcg ccactgtatg
     5641 tctgaagaca gtaaatatgt tttaatacaa atgttgtggg acaatatgaa attacatcag
     5701 gatccaggac agccgttgta catcctctgg aatgcccaca cccagaagta tccaatggtc
     5761 catttattgc aaaaaggtga taattcattt aaccaggaac tattgaaaaa tatggtaaaa
     5821 agcattaaaa tgaatgacgt ctatggacca atgagtcaga ttttagagac actgaataaa
     5881 tgtcctcatt ttaaaagaca gaggagttta tatagagaaa tactgtttct ctcacttgtg
     5941 gcactgggaa gagaaaacat tgatatagat gcatttgata aagaatacaa ggtggcatat
     6001 gatcgtctca cacctagtca agtcaagagt actcacaact gtgacagacc accaagtaca
     6061 ggagtgatgg aatgtcgaaa aacctttgga gaaccttatc tttaagatat gtgtgtgtgt
     6121 tttttcaata cgtattgtgt agtcagtgta taaaataaca cttttagact ctaacctttt
     6181 ttcttcagtt tttgaaaatg cacttgtaaa tggttcagga agttcagata gtttatgtac
     6241 agagtgtctg aagaaaatac taacaagtgg gagagagcta ctttgtttcc catttctttg
     6301 ttttttcttc tcccgtacaa gtagttaagt atttttgtga tgaaaaaatc cataaacaaa
     6361 attggttccc atagaataag acaactgttt tatggattct tttggaagag acagattgaa
     6421 aaatcatgga tggaacttaa acaaatgtaa gaacaaagta tctcctgttt tcatagacta
     6481 ctcaaatgtt ttgaccgtga agttgtatta tacatatttt aacttgttta taataagttg
     6541 atattttttt aatttttaaa cttaatatag caaacaaaat gaacttaatc ttatgaagca
     6601 aggtaattaa gtgcttattt tccttgtctg ctgctatttg aagtaattag tacagctgca
     6661 gatctctata tgtatatct
//
LOCUS       XM_032617685            8403 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 4A (DENND4A),
            transcript variant X6, mRNA.
ACCESSION   XM_032617685
VERSION     XM_032617685.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8403
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8403
                     /gene="DENND4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746283"
     CDS             382..6003
                     /gene="DENND4A"
                     /codon_start=1
                     /product="C-myc promoter-binding protein isoform X5"
                     /protein_id="XP_032473576.1"
                     /db_xref="GeneID:116746283"
                     /translation="MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEP
                     ITDVSVIIKSLGEEVPWDYTCIDVTPTGLSADLNNGSLVGPQIFLCYRRGRDKPPLTD
                     LGVLYDWKERLKQGCEVIQSTPYGRPANISGSTSSQRIYITYRRASENMTQNTLAVTD
                     ICIIIPSKGESPPHTFCKVDKNLNNSMWGSAVYLCYKKSVAKTNTISYKAGLICRYPQ
                     EDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGASAEKVYGAAIQFY
                     EPYSEENLTEKQRFLLGLASSADEKSDSSKTIHTSKCICLLSHWPFFDAFRKFLTFLY
                     RYSISGPHVLPIEKHISHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGG
                     KFSTLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYV
                     PLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDLDTNTISQTGDKKNVAWKV
                     LPKKPCKNLMNTLNNLHQQLAKLQQRPRDDGLMDLAMNDYDFNSGKRLHMIDLEIQEA
                     FLCFMASILKGYRSYLRPITQAPSETATDAASLFALQAFLRSRDRSHQKFYNMMTKTQ
                     MFIRFIEECSFVSDKDASLAFFDDCVDKVDMDKSGEVRLIELDESFKSEHTVFVTPPE
                     IPHLPNGEEPPLQYSYNGFPVLRNNLFERPEGFLQTRKSKLPSKSSSPSSPSPMFRRT
                     KQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFICLPAYVKVCHSKVRALKTAYDVL
                     KKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAV
                     LESTWPSRSRSGYFLWTKVRNVVLGVAQFKRALKKHTHLSQTTLSGGQSDLGYNSLSK
                     DEVRRGDTSTEDIQEEEDKKGSDSSSLSESESAKGSADCLPKLNYQSSSSIVRLSAAT
                     NSADKTSGESTESSSEPLLISSFEDTNETGNIHSRCFRKRHKSDNEPNLQQQISWGNR
                     NRNLSGGVLMGLMLNRINQEANPGDMVEKLGADARILSNVISKSTRPNSLDIGKPSLR
                     SKRDSIEKESSDDDTPFDGSNCLADKVDSPVIFDLEDLDNETDGSKVGYIAPQNPKRS
                     QRLNSSFSVKPFEKTDVATGFDPLSLLVAETEQQQKEEEEEEEDDSKSVSTPSARRDL
                     AEEIVMYMNNMSSPLTSRTPSIDLQRACDDKVTTKKSPTLVKACRRSSLPPNSPGPVR
                     LTKSKSYSKSEDRPRDRLWSSPAFSPTCPFREESQDALTHSSPSFNLDTLLVPKLDVL
                     RNSMFTAGKGVAEKASKWYSRFTMYTTSSKDQSSDRTSLSSVGAQDSESTSLTDEEVC
                     HELEGATSCQESSATAGTKGIDFSRTSLEGSSSLEGSLSKFALPGKSEVASSCNTSNT
                     NIFQNYAMEVLISSCSRCRTCDCLVHDEEIMAGWTADDSNLNTTCPFCGNLFLPFLNI
                     EIRDLRRPGRYFLKSSPSTENMHFPSSFSRQTRQSCISTSASGLDTSVLSVQGNFDLN
                     SKSKLLENTCARSIQIPADRSRAALSKCPVFPMARSVSTYGTLDKENNGGQKLIPTGS
                     LPTTLQGATDSLGLEWHLPSPDPITVPYLSPLVVWKELESLLENEGDHAITVADFVDH
                     HPIVFWNLVWYFRRLDLPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNM
                     KLHQDPGQPLYILWNAHSQNRTLLFETQKYPMVHLLQKGDNSFNQELLKNMVKSIKMN
                     DVYGPMSQILETLNKCPHFKRQRSLYREILFLSLVALGRENIDIDAFDKEYKVAYDRL
                     TPSQVKSTHNCDRPPSTGVMECRKTFGEPYL"
     misc_feature    961..1209
                     /gene="DENND4A"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    1306..1860
                     /gene="DENND4A"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2059..2280
                     /gene="DENND4A"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
     misc_feature    2806..2928
                     /gene="DENND4A"
                     /note="PPR repeat family; Region: PPR_2; pfam13041"
                     /db_xref="CDD:463778"
     misc_feature    2812..2901
                     /gene="DENND4A"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      
        1 gtcaagatgg cgccggtcgc agcggcggcg gccgcggcgg ctggaaccag aggaggcgga
       61 ggcagcggcg gccgcgaggg gagggggagt cccgtctgac tgagacggca ggcctgggcg
      121 ggcgggggtg ccgcgcaggg cggagcgccg ggctgggaat gagctaagcg ggttctgagc
      181 cccgcggcat tcagcctctc gtgtcccgac gccgctggtg agtggacgcg gcaccgctct
      241 ccaagctcga ccagctgctc gcgagggagc cagcggtgag tatttctcaa actccaaggc
      301 ttgcagaatt cacaaattga gatctggcat cattttcaga gagagacttt cagtaatgta
      361 tgtaaccttc tgtaatggaa gatgattgaa gataaggggc ctcgtgttgc tgactacttt
      421 gttgtagcgg gattaactga tgtttcaaag cctcttgaag aagaaattca cttcaatgat
      481 gcttgtcata aagtagctaa accaaaagaa cctatcacag atgtttcagt tattattaaa
      541 tctcttgggg aggaagtgcc atgggattac acgtgtattg atgttacccc aactggactg
      601 tcagctgatc tcaataatgg aagtcttgtg gggccgcaga ttttcctttg ctatagaaga
      661 ggaagagata agcctccact tacagatctg ggggttttat atgactggaa agaaagattg
      721 aaacaggggt gtgaagttat ccagagtact ccttacggac gccctgcaaa tattagcggc
      781 agtacctcat cacaaagaat ttatatcact taccgaagag cctctgaaaa catgactcag
      841 aatacgttgg ctgttacaga catatgtatt attataccca gtaaaggaga aagtccacca
      901 cacacattct gcaaagttga caagaatctc aataacagta tgtggggatc agcagtgtac
      961 ttatgttata aaaaatcggt ggcaaagact aacactatat cttacaaagc tggtctaatt
     1021 tgtagatacc ctcaagaaga ttatgagtca ttctcactcc cagaatctgt tcccctattt
     1081 tgtttaccaa tgggtgcaac tattgaatgt tggccatcaa atagcaaata ccctctccct
     1141 gtattttcta catttgtgtt aactggagcc tcagctgaaa aggtctatgg tgctgctatt
     1201 cagttttatg aaccatactc cgaagagaat ctcacagaaa aacagagatt tcttttgggt
     1261 ttagcatcat cagcagatga gaagtctgat agttccaaga caattcacac tagtaaatgc
     1321 atctgtcttc tctctcactg gccttttttt gatgcattca ggaagtttct gacttttcta
     1381 tatcgttatt ccatctctgg gcctcatgtc cttccaattg agaagcatat ttctcatttt
     1441 atgcataaag ttccttttcc atctcctcag agaccacgga ttttagttca gttatcacca
     1501 catgataatc tgattctcag tcagcctgtt tcttcacctc ttccgctaag cggtggcaag
     1561 ttttcaacac tacttcagaa tttaggccct gaaaatgctg tgacactact ggtgtttgca
     1621 gtaacggaac ataagattct tattcattcc ttacggcctt cagtgcttac tagtgtgaca
     1681 gaagcattag tgtctatgat tttccctttc cactggccat gcccctatgt tcctctctgc
     1741 ccactggctt tagcagatgt cttaagtgca ccatgtccgt tcatagtagg aattgattca
     1801 agatactttg atctctatga ccctccacca gatgtcagtt gtgttgacct agataccaac
     1861 acaatttctc aaactggtga taagaaaaat gtagcctgga aggtacttcc aaagaaacca
     1921 tgtaaaaatc tgatgaacac actgaataat ttgcaccagc agttggcaaa attgcagcag
     1981 agaccaagag acgatggact aatggactta gcaatgaatg attatgattt taattctgga
     2041 aagaggttgc acatgataga tttggaaatc caggaggcat ttttgtgttt catggcctct
     2101 attttaaaag gttatagatc atacttacga ccaataacac aagccccatc tgagacagcc
     2161 acagatgcag cctctctttt tgccctacaa gctttcttaa gaagccgtga ccggtcacat
     2221 cagaaattct ataacatgat gaccaaaaca caaatgttta ttcgcttcat tgaggaatgt
     2281 tcttttgtca gtgataaaga tgcaagcctg gcgttttttg atgattgtgt agataaagtg
     2341 gatatggaca agagtggtga agtgcgactt atagaactgg atgaatcttt caaaagtgaa
     2401 catactgttt ttgtaacacc acctgagatt ccccatctac ccaatggtga agaaccccct
     2461 ttacagtaca gctataatgg atttccagtt cttaggaaca atttatttga gagacctgaa
     2521 ggatttctac aaacccgaaa gagcaaattg ccttcaaaat caagtagtcc tagtagccct
     2581 tctcccatgt tcagaagaac aaaacaggaa attaaatcag cccataaaat tgccaagagg
     2641 tactcttcca ttcctcagat gtggtctagg tgtctactgc gtcactgtta cgggctgtgg
     2701 tttatttgtc tcccagctta tgtgaaagta tgtcattcaa aagtcagggc tctgaaaaca
     2761 gcctatgatg tgcttaaaaa aatgcagtca aagaagatgg atccacctga tgaggtgtgc
     2821 taccgcattc ttatgcagct ctgtggacag tatgatcagc cagtgcttgc agttcgagtg
     2881 ctgtttgaaa tgcagaaagc tggtattgac cccaatgcca taacttatgg ttattataat
     2941 aaggctgttt tggaaagtac ctggccttca aggagtcgta gtggctattt tctttggaca
     3001 aaagtgagga acgttgtttt gggagtagca cagttcaaaa gagctttaaa gaaacacaca
     3061 catttatcac aaacaactct ctcaggtggc cagtctgacc ttggatataa ttcactatct
     3121 aaggatgaag ttagaagagg ggatacatct actgaggaca ttcaagaaga agaagataag
     3181 aaagggagtg attctagttc cttgtcagag agcgagagtg caaagggaag tgctgattgt
     3241 cttcctaagc tcaattatca aagttcttcc agtatagttc gcctcagtgc tgcaactaac
     3301 agtgctgata aaacatcagg agaaagcaca gaaagttcgt ctgagccgct cttaatatca
     3361 tcttttgagg atacaaatga aacaggaaac attcacagta gatgcttcag aaaaagacat
     3421 aaaagtgaca atgagcctaa tttgcagcag caaatatcct ggggaaatag aaaccgaaat
     3481 cttagtggag gagtactaat gggacttatg ctcaatagaa ttaaccagga agcaaaccct
     3541 ggagatatgg ttgaaaaatt aggagctgat gcaagaattc tttcaaatgt aatctcaaaa
     3601 agcacaagac caaatagtct tgatattgga aagccatctt taagatcaaa gagagacagt
     3661 atagagaagg aatctagtga tgatgataca ccttttgatg gttctaattg tttggcagat
     3721 aaagtggatt ctcctgttat ttttgactta gaagacttag acaatgaaac agatggatca
     3781 aaagtggggt acattgctcc acaaaatcct aagaggagtc aacgcttgaa tagcagcttt
     3841 tcagtaaaac ctttcgaaaa aactgatgtt gcaacaggat ttgatcccct ctctcttttg
     3901 gttgctgaga ctgaacagca gcaaaaagag gaggaggaag aggaggaaga tgatagcaaa
     3961 agcgtttcga caccatctgc taggcgggat ttagctgaag aaattgtgat gtatatgaat
     4021 aacatgagca gtcctttgac aagtcgaaca ccaagcattg atttacaacg ggcctgtgat
     4081 gataaagtaa ccactaagaa aagtccaacg ttggtcaagg catgcagaag atctagcctg
     4141 cctcctaatt ctcctgggcc agtgagactt accaaatcta aaagttactc aaaaagcgaa
     4201 gacagaccaa gggatagact ctggtcttct ccagccttct cacctacttg cccatttaga
     4261 gaagaatctc aagatgcatt aacccattca tcaccttcat ttaatttaga tacactacta
     4321 gtacctaaac tagatgttct aagaaacagt atgttcactg ctggaaaagg agttgcagag
     4381 aaagcaagca aatggtattc aagattcacc atgtacacca catcatccaa ggatcaaagt
     4441 tctgatcgta ccagtctttc ttcagtggga gcccaggatt ctgaatctac ctctttaaca
     4501 gatgaagagg tctgccacga gttggaagga gccacttctt gtcaggaaag cagtgccact
     4561 gcagggacta agggaattga tttcagcaga acaagcctgg aaggttcttc ctccttagaa
     4621 ggatccttgt ccaagtttgc cttacctggg aagtcagaag tggcatcttc ctgcaacacg
     4681 agtaatacaa atatcttcca gaactatgca atggaggttc ttatctcgag ctgctctcgt
     4741 tgtagaacct gtgattgtct tgtccatgat gaggaaatca tggctggctg gacagcagat
     4801 gattcaaatc tcaatacaac ctgcccattt tgtggcaatc ttttcttgcc ctttctgaac
     4861 atcgaaataa gagatttaag acgacctgga agatactttt tgaagtcaag cccgtctaca
     4921 gaaaatatgc attttccatc ctccttttca aggcagacaa ggcagtcttg tatctcaaca
     4981 tcagcctcgg gtcttgacac atctgttctc tctgttcaag ggaattttga tctaaatagc
     5041 aaatcaaagt tgctcgaaaa tacatgtgcc cgaagtattc agatccctgc tgatagatca
     5101 agagcagctt tgtcaaaatg tccagtattt ccaatggcca ggagtgttag tacttatggc
     5161 accttggata aggaaaacaa tggaggacag aagctcattc ctacaggcag cctgccaact
     5221 actttacaag gagctacaga ttctttagga ttagaatggc acctcccaag tccagatcct
     5281 atcactgttc catatcttag tcctttagtg gtatggaagg aacttgaaag cttattggaa
     5341 aatgaaggtg atcatgcaat aacagtggca gactttgtgg accatcatcc aattgttttt
     5401 tggaacctgg tgtggtattt tagacgtctt gacttaccca gtaatttacc tggattgatt
     5461 ctttcttctg agcattgtaa caagtattca aagattcctc gccactgtat gtctgaagac
     5521 agtaaatatg ttttaataca aatgttgtgg gacaatatga aattacatca ggatccagga
     5581 cagccgttgt acatcctctg gaatgcccac agtcaaaatc gtactctttt gtttgagacc
     5641 cagaagtatc caatggtcca tttattgcaa aaaggtgata attcatttaa ccaggaacta
     5701 ttgaaaaata tggtaaaaag cattaaaatg aatgacgtct atggaccaat gagtcagatt
     5761 ttagagacac tgaataaatg tcctcatttt aaaagacaga ggagtttata tagagaaata
     5821 ctgtttctct cacttgtggc actgggaaga gaaaacattg atatagatgc atttgataaa
     5881 gaatacaagg tggcatatga tcgtctcaca cctagtcaag tcaagagtac tcacaactgt
     5941 gacagaccac caagtacagg agtgatggaa tgtcgaaaaa cctttggaga accttatctt
     6001 taagatatgt gtgtgtgttt tttcaatacg tattgtgtag tcagtgtata aaataacact
     6061 tttagactct aacctttttt cttcagtttt tgaaaatgca cttgtaaatg gttcaggaag
     6121 ttcagatagt ttatgtacag agtgtctgaa gaaaatacta acaagtggga gagagctact
     6181 ttgtttccca tttctttgtt ttttcttctc ccgtacaagt agttaagtat ttttgtgatg
     6241 aaaaaatcca taaacaaaat tggttcccat agaataagac aactgtttta tggattcttt
     6301 tggaagagac agattgaaaa atcatggatg gaacttaaac aaatgtaaga acaaagtatc
     6361 tcctgttttc atagactact caaatgtttt gaccgtgaag ttgtattata catattttaa
     6421 cttgtttata ataagttgat atttttttaa tttttaaact taatatagca aacaaaatga
     6481 acttaatctt atgaagcaag gtaattaagt gcttattttc cttgtctgct gctatttgaa
     6541 gtaattagta cagctgcaga tctctatatg tatatctata ctttttttac tacttggaag
     6601 aatgattcag aaatgtcagc gctagtgtca gtgttgtcct aggatcgcat attagtactc
     6661 ctgtgcctga ctgcagtggg tgagtcatgg caagggtgtg cattgcccag actgactcac
     6721 tgagccttgt ggaaggacag ccagagaggt tccaaatctg cttctgtaaa atcaggttca
     6781 atataccatg attccaaaat tgtctctatt gctaatagat acatacaata cacagggaaa
     6841 atagcttata gagccaaata tcaatttaaa ttttaatatt ctacatgaac acttatgtta
     6901 ggaaatatgt cagacagttt atcccaaatt ctacctttat tttaatatct aaaatattgg
     6961 atatgatgca aattgtagta tgtttatctg gaatatgacc tattggagta ttctgttaat
     7021 attatatata tatatattat atataaatat tcaaaatatt ttttcaaaag tagaaaaata
     7081 ataactctct aaaagtacag ccagatagaa tttcccatat tgaggaacct ggctttttca
     7141 ataagccttc agaatctggt ttatggaatc taaaatccag caatatccag aaatagacag
     7201 taaactgaat gtttaagtac catgggtatt aaatagaatc ttaaaaaata tttgtagtcg
     7261 cattatttct aatatcactt tctttgggta attctgataa aaaagtatcc tttggccgtt
     7321 agaattattt atagattttc agtgtgttca tgtgtgtgtt tgcacacatt gtcataatga
     7381 aggaattctc tagccaattt caaagaagga aaaaatgaaa ggtcctaaat tagatgtgta
     7441 gaagccggca gagttcagga cactttggac tggagatacc ttaaagtcct gagactaaga
     7501 accagttcag ctgtagaaaa aacacttttg agttcatccc actagtgaat agcaccaagc
     7561 taaaacattt cacagctttc tactctggga aataatggag aaagtttaaa aatgtaaaat
     7621 tttagttcag ttagtttggc gctgaacttg cttacttgaa aagtctggtg ctgtgcacat
     7681 gtatctgcct ctcttttgta aataccactc ttgtcttatc cttccttcct attcaggtcc
     7741 acgcttcaca ttctaattca gtcttacgtt ctctaagtca cagtcatttc aaaggagaga
     7801 aacatttgat agatgaggct tttggcatta gtgacaaaca tccctccaaa cagaattctg
     7861 gggttctatt ctggtttttt gttattgttt gtataagaac agctttcact attgattatc
     7921 ttttctttaa cacaagcaat gtatatgaat aacagtttat tgatttcaaa tatctgacca
     7981 aaaaaagtaa ggtaaagccc attctttatg gttcagactc atttggaaaa gtgaatgtaa
     8041 tttttatctc cttcccctga caccaagttt tgtttctact tttgactggg ttttatttcc
     8101 cctattttca atccccaggg aatattattt gcacaaatct actctttaaa aataaaacct
     8161 aaaacatgaa tagagagtgg taaaccttga tcaaaagaaa attaaaatgt agatcatcct
     8221 ttgaaataac tccatacaaa cttttcttca attttatctc tgttgaccat acattttaga
     8281 gaatcatggc caatcatgtt agagagaaat acccttttgc tacattatct gtcttttatt
     8341 ttcttactct tagttttgtt tatctgttta ctagttgaaa ataaatcatg ccatgtcctg
     8401 gta
//
LOCUS       XM_032617694            8376 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DENN domain containing 4A (DENND4A),
            transcript variant X7, mRNA.
ACCESSION   XM_032617694
VERSION     XM_032617694.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8376
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8376
                     /gene="DENND4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746283"
     CDS             382..5976
                     /gene="DENND4A"
                     /codon_start=1
                     /product="C-myc promoter-binding protein isoform X6"
                     /protein_id="XP_032473585.1"
                     /db_xref="GeneID:116746283"
                     /translation="MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEP
                     ITDVSVIIKSLGEEVPWDYTCIDVTPTGLSADLNNGSLVGPQIFLCYRRGRDKPPLTD
                     LGVLYDWKERLKQGCEVIQSTPYGRPANISGSTSSQRIYITYRRASENMTQNTLAVTD
                     ICIIIPSKGESPPHTFCKVDKNLNNSMWGSAVYLCYKKSVAKTNTISYKAGLICRYPQ
                     EDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGASAEKVYGAAIQFY
                     EPYSEENLTEKQRFLLGLASSADEKSDSSKTIHTSKCICLLSHWPFFDAFRKFLTFLY
                     RYSISGPHVLPIEKHISHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGG
                     KFSTLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYV
                     PLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDLDTNTISQTGDKKNVAWKV
                     LPKKPCKNLMNTLNNLHQQLAKLQQRPRDDGLMDLAMNDYDFNSGKRLHMIDLEIQEA
                     FLCFMASILKGYRSYLRPITQAPSETATDAASLFALQAFLRSRDRSHQKFYNMMTKTQ
                     MFIRFIEECSFVSDKDASLAFFDDCVDKVDMDKSGEVRLIELDESFKSEHTVFVTPPE
                     IPHLPNGEEPPLQYSYNGFPVLRNNLFERPEGFLQTRKSKLPSKSSSPSSPSPMFRRT
                     KQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFICLPAYVKVCHSKVRALKTAYDVL
                     KKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAV
                     LESTWPSRSRSGYFLWTKVRNVVLGVAQFKRALKKHTHLSQTTLSGGQSDLGYNSLSK
                     DEVRRGDTSTEDIQEEEDKKGSDSSSLSESESAKGSADCLPKLNYQSSSSIVRLSAAT
                     NSADKTSGESTESSSEPLLISSFEDTNETGNIHSRCFRKRHKSDNEPNLQQQISWGNR
                     NRNLSGGVLMGLMLNRINQEANPGDMVEKLGADARILSNVISKSTRPNSLDIGKPSLR
                     SKRDSIEKESSDDDTPFDGSNCLADKVDSPVIFDLEDLDNETDGSKVGYIAPQNPKRS
                     QRLNSSFSVKPFEKTDVATGFDPLSLLVAETEQQQKEEEEEEEDDSKSVSTPSARRDL
                     AEEIVMYMNNMSSPLTSRTPSIDLQRACDDKVTTKKSPTLVKACRRSSLPPNSPGPVR
                     LTKSKSYSKSEDRPRDRLWSSPAFSPTCPFREESQDALTHSSPSFNLDTLLVPKLDVL
                     RNSMFTAGKGVAEKASKWYSRFTMYTTSSKDQSSDRTSLSSVGAQDSESTSLTDEEVC
                     HELEGATSCQESSATAGTKGIDFSRTSLEGSSSLEGSLSKFALPGKSEVASSCNTSNT
                     NIFQNYAMEVLISSCSRCRTCDCLVHDEEIMAGWTADDSNLNTTCPFCGNLFLPFLNI
                     EIRDLRRPGRYFLKSSPSTENMHFPSSFSRQTRQSCISTSASGLDTSVLSVQGNFDLN
                     SKSKLLENTCARSIQIPADRSRAALSKCPVFPMARSVSTYGTLDKENNGGQKLIPTGS
                     LPTTLQGATDSLGLEWHLPSPDPITVPYLSPLVVWKELESLLENEGDHAITVADFVDH
                     HPIVFWNLVWYFRRLDLPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNM
                     KLHQDPGQPLYILWNAHTQKYPMVHLLQKGDNSFNQELLKNMVKSIKMNDVYGPMSQI
                     LETLNKCPHFKRQRSLYREILFLSLVALGRENIDIDAFDKEYKVAYDRLTPSQVKSTH
                     NCDRPPSTGVMECRKTFGEPYL"
     misc_feature    961..1209
                     /gene="DENND4A"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; Region: uDENN;
                     smart00800"
                     /db_xref="CDD:214824"
     misc_feature    1306..1860
                     /gene="DENND4A"
                     /note="DENN (AEX-3) domain; Region: DENN; pfam02141"
                     /db_xref="CDD:460461"
     misc_feature    2059..2280
                     /gene="DENND4A"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; Region: dDENN;
                     smart00801"
                     /db_xref="CDD:129037"
     misc_feature    2806..2928
                     /gene="DENND4A"
                     /note="PPR repeat family; Region: PPR_2; pfam13041"
                     /db_xref="CDD:463778"
     misc_feature    2812..2901
                     /gene="DENND4A"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      
        1 gtcaagatgg cgccggtcgc agcggcggcg gccgcggcgg ctggaaccag aggaggcgga
       61 ggcagcggcg gccgcgaggg gagggggagt cccgtctgac tgagacggca ggcctgggcg
      121 ggcgggggtg ccgcgcaggg cggagcgccg ggctgggaat gagctaagcg ggttctgagc
      181 cccgcggcat tcagcctctc gtgtcccgac gccgctggtg agtggacgcg gcaccgctct
      241 ccaagctcga ccagctgctc gcgagggagc cagcggtgag tatttctcaa actccaaggc
      301 ttgcagaatt cacaaattga gatctggcat cattttcaga gagagacttt cagtaatgta
      361 tgtaaccttc tgtaatggaa gatgattgaa gataaggggc ctcgtgttgc tgactacttt
      421 gttgtagcgg gattaactga tgtttcaaag cctcttgaag aagaaattca cttcaatgat
      481 gcttgtcata aagtagctaa accaaaagaa cctatcacag atgtttcagt tattattaaa
      541 tctcttgggg aggaagtgcc atgggattac acgtgtattg atgttacccc aactggactg
      601 tcagctgatc tcaataatgg aagtcttgtg gggccgcaga ttttcctttg ctatagaaga
      661 ggaagagata agcctccact tacagatctg ggggttttat atgactggaa agaaagattg
      721 aaacaggggt gtgaagttat ccagagtact ccttacggac gccctgcaaa tattagcggc
      781 agtacctcat cacaaagaat ttatatcact taccgaagag cctctgaaaa catgactcag
      841 aatacgttgg ctgttacaga catatgtatt attataccca gtaaaggaga aagtccacca
      901 cacacattct gcaaagttga caagaatctc aataacagta tgtggggatc agcagtgtac
      961 ttatgttata aaaaatcggt ggcaaagact aacactatat cttacaaagc tggtctaatt
     1021 tgtagatacc ctcaagaaga ttatgagtca ttctcactcc cagaatctgt tcccctattt
     1081 tgtttaccaa tgggtgcaac tattgaatgt tggccatcaa atagcaaata ccctctccct
     1141 gtattttcta catttgtgtt aactggagcc tcagctgaaa aggtctatgg tgctgctatt
     1201 cagttttatg aaccatactc cgaagagaat ctcacagaaa aacagagatt tcttttgggt
     1261 ttagcatcat cagcagatga gaagtctgat agttccaaga caattcacac tagtaaatgc
     1321 atctgtcttc tctctcactg gccttttttt gatgcattca ggaagtttct gacttttcta
     1381 tatcgttatt ccatctctgg gcctcatgtc cttccaattg agaagcatat ttctcatttt
     1441 atgcataaag ttccttttcc atctcctcag agaccacgga ttttagttca gttatcacca
     1501 catgataatc tgattctcag tcagcctgtt tcttcacctc ttccgctaag cggtggcaag
     1561 ttttcaacac tacttcagaa tttaggccct gaaaatgctg tgacactact ggtgtttgca
     1621 gtaacggaac ataagattct tattcattcc ttacggcctt cagtgcttac tagtgtgaca
     1681 gaagcattag tgtctatgat tttccctttc cactggccat gcccctatgt tcctctctgc
     1741 ccactggctt tagcagatgt cttaagtgca ccatgtccgt tcatagtagg aattgattca
     1801 agatactttg atctctatga ccctccacca gatgtcagtt gtgttgacct agataccaac
     1861 acaatttctc aaactggtga taagaaaaat gtagcctgga aggtacttcc aaagaaacca
     1921 tgtaaaaatc tgatgaacac actgaataat ttgcaccagc agttggcaaa attgcagcag
     1981 agaccaagag acgatggact aatggactta gcaatgaatg attatgattt taattctgga
     2041 aagaggttgc acatgataga tttggaaatc caggaggcat ttttgtgttt catggcctct
     2101 attttaaaag gttatagatc atacttacga ccaataacac aagccccatc tgagacagcc
     2161 acagatgcag cctctctttt tgccctacaa gctttcttaa gaagccgtga ccggtcacat
     2221 cagaaattct ataacatgat gaccaaaaca caaatgttta ttcgcttcat tgaggaatgt
     2281 tcttttgtca gtgataaaga tgcaagcctg gcgttttttg atgattgtgt agataaagtg
     2341 gatatggaca agagtggtga agtgcgactt atagaactgg atgaatcttt caaaagtgaa
     2401 catactgttt ttgtaacacc acctgagatt ccccatctac ccaatggtga agaaccccct
     2461 ttacagtaca gctataatgg atttccagtt cttaggaaca atttatttga gagacctgaa
     2521 ggatttctac aaacccgaaa gagcaaattg ccttcaaaat caagtagtcc tagtagccct
     2581 tctcccatgt tcagaagaac aaaacaggaa attaaatcag cccataaaat tgccaagagg
     2641 tactcttcca ttcctcagat gtggtctagg tgtctactgc gtcactgtta cgggctgtgg
     2701 tttatttgtc tcccagctta tgtgaaagta tgtcattcaa aagtcagggc tctgaaaaca
     2761 gcctatgatg tgcttaaaaa aatgcagtca aagaagatgg atccacctga tgaggtgtgc
     2821 taccgcattc ttatgcagct ctgtggacag tatgatcagc cagtgcttgc agttcgagtg
     2881 ctgtttgaaa tgcagaaagc tggtattgac cccaatgcca taacttatgg ttattataat
     2941 aaggctgttt tggaaagtac ctggccttca aggagtcgta gtggctattt tctttggaca
     3001 aaagtgagga acgttgtttt gggagtagca cagttcaaaa gagctttaaa gaaacacaca
     3061 catttatcac aaacaactct ctcaggtggc cagtctgacc ttggatataa ttcactatct
     3121 aaggatgaag ttagaagagg ggatacatct actgaggaca ttcaagaaga agaagataag
     3181 aaagggagtg attctagttc cttgtcagag agcgagagtg caaagggaag tgctgattgt
     3241 cttcctaagc tcaattatca aagttcttcc agtatagttc gcctcagtgc tgcaactaac
     3301 agtgctgata aaacatcagg agaaagcaca gaaagttcgt ctgagccgct cttaatatca
     3361 tcttttgagg atacaaatga aacaggaaac attcacagta gatgcttcag aaaaagacat
     3421 aaaagtgaca atgagcctaa tttgcagcag caaatatcct ggggaaatag aaaccgaaat
     3481 cttagtggag gagtactaat gggacttatg ctcaatagaa ttaaccagga agcaaaccct
     3541 ggagatatgg ttgaaaaatt aggagctgat gcaagaattc tttcaaatgt aatctcaaaa
     3601 agcacaagac caaatagtct tgatattgga aagccatctt taagatcaaa gagagacagt
     3661 atagagaagg aatctagtga tgatgataca ccttttgatg gttctaattg tttggcagat
     3721 aaagtggatt ctcctgttat ttttgactta gaagacttag acaatgaaac agatggatca
     3781 aaagtggggt acattgctcc acaaaatcct aagaggagtc aacgcttgaa tagcagcttt
     3841 tcagtaaaac ctttcgaaaa aactgatgtt gcaacaggat ttgatcccct ctctcttttg
     3901 gttgctgaga ctgaacagca gcaaaaagag gaggaggaag aggaggaaga tgatagcaaa
     3961 agcgtttcga caccatctgc taggcgggat ttagctgaag aaattgtgat gtatatgaat
     4021 aacatgagca gtcctttgac aagtcgaaca ccaagcattg atttacaacg ggcctgtgat
     4081 gataaagtaa ccactaagaa aagtccaacg ttggtcaagg catgcagaag atctagcctg
     4141 cctcctaatt ctcctgggcc agtgagactt accaaatcta aaagttactc aaaaagcgaa
     4201 gacagaccaa gggatagact ctggtcttct ccagccttct cacctacttg cccatttaga
     4261 gaagaatctc aagatgcatt aacccattca tcaccttcat ttaatttaga tacactacta
     4321 gtacctaaac tagatgttct aagaaacagt atgttcactg ctggaaaagg agttgcagag
     4381 aaagcaagca aatggtattc aagattcacc atgtacacca catcatccaa ggatcaaagt
     4441 tctgatcgta ccagtctttc ttcagtggga gcccaggatt ctgaatctac ctctttaaca
     4501 gatgaagagg tctgccacga gttggaagga gccacttctt gtcaggaaag cagtgccact
     4561 gcagggacta agggaattga tttcagcaga acaagcctgg aaggttcttc ctccttagaa
     4621 ggatccttgt ccaagtttgc cttacctggg aagtcagaag tggcatcttc ctgcaacacg
     4681 agtaatacaa atatcttcca gaactatgca atggaggttc ttatctcgag ctgctctcgt
     4741 tgtagaacct gtgattgtct tgtccatgat gaggaaatca tggctggctg gacagcagat
     4801 gattcaaatc tcaatacaac ctgcccattt tgtggcaatc ttttcttgcc ctttctgaac
     4861 atcgaaataa gagatttaag acgacctgga agatactttt tgaagtcaag cccgtctaca
     4921 gaaaatatgc attttccatc ctccttttca aggcagacaa ggcagtcttg tatctcaaca
     4981 tcagcctcgg gtcttgacac atctgttctc tctgttcaag ggaattttga tctaaatagc
     5041 aaatcaaagt tgctcgaaaa tacatgtgcc cgaagtattc agatccctgc tgatagatca
     5101 agagcagctt tgtcaaaatg tccagtattt ccaatggcca ggagtgttag tacttatggc
     5161 accttggata aggaaaacaa tggaggacag aagctcattc ctacaggcag cctgccaact
     5221 actttacaag gagctacaga ttctttagga ttagaatggc acctcccaag tccagatcct
     5281 atcactgttc catatcttag tcctttagtg gtatggaagg aacttgaaag cttattggaa
     5341 aatgaaggtg atcatgcaat aacagtggca gactttgtgg accatcatcc aattgttttt
     5401 tggaacctgg tgtggtattt tagacgtctt gacttaccca gtaatttacc tggattgatt
     5461 ctttcttctg agcattgtaa caagtattca aagattcctc gccactgtat gtctgaagac
     5521 agtaaatatg ttttaataca aatgttgtgg gacaatatga aattacatca ggatccagga
     5581 cagccgttgt acatcctctg gaatgcccac acccagaagt atccaatggt ccatttattg
     5641 caaaaaggtg ataattcatt taaccaggaa ctattgaaaa atatggtaaa aagcattaaa
     5701 atgaatgacg tctatggacc aatgagtcag attttagaga cactgaataa atgtcctcat
     5761 tttaaaagac agaggagttt atatagagaa atactgtttc tctcacttgt ggcactggga
     5821 agagaaaaca ttgatataga tgcatttgat aaagaataca aggtggcata tgatcgtctc
     5881 acacctagtc aagtcaagag tactcacaac tgtgacagac caccaagtac aggagtgatg
     5941 gaatgtcgaa aaacctttgg agaaccttat ctttaagata tgtgtgtgtg ttttttcaat
     6001 acgtattgtg tagtcagtgt ataaaataac acttttagac tctaaccttt tttcttcagt
     6061 ttttgaaaat gcacttgtaa atggttcagg aagttcagat agtttatgta cagagtgtct
     6121 gaagaaaata ctaacaagtg ggagagagct actttgtttc ccatttcttt gttttttctt
     6181 ctcccgtaca agtagttaag tatttttgtg atgaaaaaat ccataaacaa aattggttcc
     6241 catagaataa gacaactgtt ttatggattc ttttggaaga gacagattga aaaatcatgg
     6301 atggaactta aacaaatgta agaacaaagt atctcctgtt ttcatagact actcaaatgt
     6361 tttgaccgtg aagttgtatt atacatattt taacttgttt ataataagtt gatatttttt
     6421 taatttttaa acttaatata gcaaacaaaa tgaacttaat cttatgaagc aaggtaatta
     6481 agtgcttatt ttccttgtct gctgctattt gaagtaatta gtacagctgc agatctctat
     6541 atgtatatct atactttttt tactacttgg aagaatgatt cagaaatgtc agcgctagtg
     6601 tcagtgttgt cctaggatcg catattagta ctcctgtgcc tgactgcagt gggtgagtca
     6661 tggcaagggt gtgcattgcc cagactgact cactgagcct tgtggaagga cagccagaga
     6721 ggttccaaat ctgcttctgt aaaatcaggt tcaatatacc atgattccaa aattgtctct
     6781 attgctaata gatacataca atacacaggg aaaatagctt atagagccaa atatcaattt
     6841 aaattttaat attctacatg aacacttatg ttaggaaata tgtcagacag tttatcccaa
     6901 attctacctt tattttaata tctaaaatat tggatatgat gcaaattgta gtatgtttat
     6961 ctggaatatg acctattgga gtattctgtt aatattatat atatatatat tatatataaa
     7021 tattcaaaat attttttcaa aagtagaaaa ataataactc tctaaaagta cagccagata
     7081 gaatttccca tattgaggaa cctggctttt tcaataagcc ttcagaatct ggtttatgga
     7141 atctaaaatc cagcaatatc cagaaataga cagtaaactg aatgtttaag taccatgggt
     7201 attaaataga atcttaaaaa atatttgtag tcgcattatt tctaatatca ctttctttgg
     7261 gtaattctga taaaaaagta tcctttggcc gttagaatta tttatagatt ttcagtgtgt
     7321 tcatgtgtgt gtttgcacac attgtcataa tgaaggaatt ctctagccaa tttcaaagaa
     7381 ggaaaaaatg aaaggtccta aattagatgt gtagaagccg gcagagttca ggacactttg
     7441 gactggagat accttaaagt cctgagacta agaaccagtt cagctgtaga aaaaacactt
     7501 ttgagttcat cccactagtg aatagcacca agctaaaaca tttcacagct ttctactctg
     7561 ggaaataatg gagaaagttt aaaaatgtaa aattttagtt cagttagttt ggcgctgaac
     7621 ttgcttactt gaaaagtctg gtgctgtgca catgtatctg cctctctttt gtaaatacca
     7681 ctcttgtctt atccttcctt cctattcagg tccacgcttc acattctaat tcagtcttac
     7741 gttctctaag tcacagtcat ttcaaaggag agaaacattt gatagatgag gcttttggca
     7801 ttagtgacaa acatccctcc aaacagaatt ctggggttct attctggttt tttgttattg
     7861 tttgtataag aacagctttc actattgatt atcttttctt taacacaagc aatgtatatg
     7921 aataacagtt tattgatttc aaatatctga ccaaaaaaag taaggtaaag cccattcttt
     7981 atggttcaga ctcatttgga aaagtgaatg taatttttat ctccttcccc tgacaccaag
     8041 ttttgtttct acttttgact gggttttatt tcccctattt tcaatcccca gggaatatta
     8101 tttgcacaaa tctactcttt aaaaataaaa cctaaaacat gaatagagag tggtaaacct
     8161 tgatcaaaag aaaattaaaa tgtagatcat cctttgaaat aactccatac aaacttttct
     8221 tcaattttat ctctgttgac catacatttt agagaatcat ggccaatcat gttagagaga
     8281 aatacccttt tgctacatta tctgtctttt attttcttac tcttagtttt gtttatctgt
     8341 ttactagttg aaaataaatc atgccatgtc ctggta
//
LOCUS       XM_032617708            3570 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 24 member 1
            (SLC24A1), mRNA.
ACCESSION   XM_032617708
VERSION     XM_032617708.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1937              VOSU01000015.1     69680135-69682071   c
            1938-1991           VOSU01000015.1     69668893-69668946   c
            1992-2100           VOSU01000015.1     69667117-69667225   c
            2101-2187           VOSU01000015.1     69662795-69662881   c
            2188-2228           VOSU01000015.1     69661654-69661694   c
            2229-2279           VOSU01000015.1     69661601-69661651   c
            2280-3005           VOSU01000015.1     69658903-69659628   c
            3006-3095           VOSU01000015.1     69658077-69658166   c
            3096-3262           VOSU01000015.1     69656820-69656986   c
            3263-3570           VOSU01000015.1     69655569-69655876   c
FEATURES             Location/Qualifiers
     source          1..3570
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3570
                     /gene="SLC24A1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746313"
     CDS             60..3512
                     /gene="SLC24A1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: sodium/potassium/calcium
                     exchanger 1"
                     /protein_id="XP_032473599.1"
                     /db_xref="GeneID:116746313"
                     /translation="MGKLIRMGAQERRLLWPKRLHWRRLLFLLGMLIMGSTYQCLRSP
                     RGLPSLWAAVSSQHPVKLASRDLSNNEMMMVSSDPPKSSSEMEVETWAPQATVGRDGT
                     TPGVTMENTPSIPRRIANVIPATPKSSDSPAAAHTEKVKEDTPATPSGALNHYPPTSG
                     RPVVNNYTPSTRRGEVKSYRPTQARGKVRKYTPSPLGRMVNSYAPSTFMTMTRSHGIT
                     PRATVKDSEIMTTNKILETNPSKRVLGETTPTPLKGVTDNALPFLINDLETDILTSPR
                     NVAEDKTLTTTRRVDNNSSTNHRGLVGKNSLTTPQGTVLEHTAATSEGQVAVSITTET
                     KASTTAWKARNPSSRTSAPTVGISSATFWGLVKNPSPAPTTPATPRVRASPTTQVHHC
                     VVVEPVPVSSTVPSPSLTTAGMPEAPSPSVLPSGQPDLHPKAEYPRDLFSVKERRQGW
                     VVLHIFGMLYVFVALAIVCDEYFVPALGVITDKLQISEDVAGATFMAAGGSAPELFTS
                     LIGIFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPLFRDITFYILDLM
                     MLILFFLDSLIVWWESLLLLLAYALYVFTMKWNKQLELWVKKQLSKRPVAKVMALGDL
                     SKLGDGTVVVDEQQDNKKLKLASVLTQGSSLASLHNSTIRSTIYQLILHSLDTLGEAR
                     PSKDKEEESLNQEAKAKPQAKAESKPEEEEPAKLPEVTVTPAPAPDVKGYQEEDPGSQ
                     GDVAEAESTGERTDNEVKTPGEGENGEQSGGEAQPEGEGEEKGENESEGDIQAERKGE
                     NESEGDILAERKGDDEGEGEIQAGEDGEMKGDEGDLQAERKGDDEGEGEIQVGEDGEM
                     KGDEGDLQAERKGDDEGEGEIQAGEDGEMKGDEGETGEQELNAENQDEAKEDEKGIDG
                     EEEGDGGESEDEEDEEEEGEEEEEEEEEEEEEPLSLEWPETRQKQAIYLFLLPIVFPL
                     WLTVPDVRRLEARKFFVITFLGSIMWIAMFSYLMVWWAHQVGETIGISEEIMGLTILA
                     AGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPLPWMLFSFINGLQPVPVS
                     SNGLFCAIVLLFLMLLFVISSIALCKWRMNKILGFTMFLLYFVFLIISVMLEDRIISC
                     PVSV"
     misc_feature    60..3509
                     /gene="SLC24A1"
                     /note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904;
                     TIGR00927"
                     /db_xref="CDD:273344"
ORIGIN      
        1 cccccgtctt tcaatggaca gaatgagagg ccttctgtaa ccaggcataa ctggccatca
       61 tggggaaatt gatcaggatg ggagcgcagg agaggcggtt actctggcca aagcggcttc
      121 attggaggcg cctcctcttc ctattgggaa tgctgatcat gggttccacc taccagtgcc
      181 tgaggagccc ccgggggctc ccctcactgt gggcagcagt ctcttcccaa caccctgtaa
      241 aattagccag ccgggacctt tccaacaatg agatgatgat ggtgagcagt gaccctccaa
      301 aatctagctc tgagatggag gttgagacat gggcacccca agccacagta ggcagagatg
      361 gaacaacacc tggtgtaaca atggagaaca cccccagtat acctagaagg atagccaacg
      421 tcattccagc aacacccaag agcagcgaca gcccagcagc agcccacaca gaaaaagtga
      481 aggaagacac cccagccaca cccagtggag cactgaatca ctaccctcca acttcaggca
      541 gaccagtggt aaataattat accccatcaa cacgcagggg agaagtgaag agctatcgcc
      601 caactcaagc caggggaaag gtgaggaaat acaccccatc cccacttggt aggatggtga
      661 acagttacgc cccatccaca ttcatgacaa tgaccaggag ccatgggatc actcccagag
      721 caacagtgaa agacagtgaa attatgacaa ccaacaaaat actggagacc aacccttcca
      781 agagagtatt gggggaaacc accccaactc ctctcaaggg agtaactgat aacgccctac
      841 ccttcctgat aaatgactta gaaacagaca tcttgacttc tccaaggaat gtggcagaag
      901 acaagaccct aactaccacc agaagagtgg acaataatag ctcaaccaac caccggggat
      961 tagtgggaaa aaacagcctg acaacacccc aaggaacagt cctggagcac accgcagcca
     1021 cctctgaggg gcaggtggca gtaagcatca cgacagaaac caaagcctct actactgcgt
     1081 ggaaggctag gaatccctcg tccagaacca gtgcaccgac cgttggaata tcctcagcca
     1141 ccttctgggg gctggtgaag aacccttcac cagcacccac cactccagca actcccaggg
     1201 tcagggcaag tccgaccact caggtccatc actgtgtggt tgtggagcca gtcccagtct
     1261 catccactgt cccctccccc agtctgacaa cagctgggat gccagaggct cccagtccct
     1321 cagtactgcc ttctgggcag ccagacctcc accccaaggc agagtacccc cgagacctgt
     1381 tcagtgtgaa ggagcggagg cagggctggg tggtcctgca catctttggc atgctgtatg
     1441 tgtttgtagc cttggccatc gtttgtgacg agtactttgt cccagccctg ggtgtcatca
     1501 cagacaagct gcagatctct gaggatgtgg caggtgctac cttcatggct gctggaggct
     1561 ctgcccccga gctcttcacc tccctcatcg gcatcttcat ctcccatagc aatgtgggca
     1621 tcggcaccat agtgggctct gcggtgttca acatcctctt tgtcattggc acttgtgccc
     1681 tcttctcccg ggagatcctc aacctcacct ggtggccctt gttccgtgac atcaccttct
     1741 acatccttga cctaatgatg ctcatcctct tcttcctgga tagcctcatt gtctggtggg
     1801 agagcctgct gcttctgctg gcctatgccc tctatgtgtt caccatgaag tggaacaaac
     1861 agcttgagct ctgggtgaag aagcaactca gcaagaggcc agtggccaag gtcatggccc
     1921 taggggacct tagcaagctg ggcgatggga cagttgtggt ggatgagcag caggataaca
     1981 agaagctgaa gctcgcgtcc gtgctgaccc aagggagcag cttggcctct ctgcacaaca
     2041 gtaccatccg cagcaccatc taccagctca ttctccacag cctggacact ctgggggaag
     2101 cccggccctc caaggacaag gaggaggaga gcttgaatca ggaggccaaa gccaagcctc
     2161 aggccaaagc agagagcaaa ccagaagagg aggagccagc caagctccct gaggtcacgg
     2221 tcacacccgc ccctgctcca gacgtcaagg gatatcagga ggaagatcct ggcagtcagg
     2281 gagatgtggc tgaagctgag agcacaggtg aaaggacaga taatgaggtt aaaactcctg
     2341 gtgaaggtga aaatggagag caaagtggag gtgaagctca accagaaggt gaaggtgaag
     2401 aaaaaggaga gaatgaaagt gaaggtgaca tccaggcaga aaggaaagga gagaatgaaa
     2461 gtgaaggtga catcctggca gaaaggaaag gagatgatga aggtgaaggt gaaatccaag
     2521 caggagaaga tggtgaaatg aaaggtgatg aaggtgacct ccaggcagaa aggaaaggag
     2581 atgatgaagg tgaaggtgaa atccaagtag gagaagatgg tgaaatgaaa ggtgatgaag
     2641 gtgacctcca ggcagaaagg aaaggagatg atgaaggtga aggtgaaatc caagcaggag
     2701 aagatggtga aatgaaaggt gatgaaggtg aaactggaga gcaggaattg aacgctgaaa
     2761 atcaagatga agccaaagaa gatgagaaag gtatagatgg tgaagaggaa ggtgatggag
     2821 gtgagagtga agacgaggag gatgaggagg aggagggaga ggaggaggag gaggaggagg
     2881 aggaggagga ggaggagcct ttgtccctgg aatggcctga gaccaggcag aagcaagcca
     2941 tttacctctt tcttctgccc attgtgttcc cactgtggct gacggtgccc gacgttcgga
     3001 ggctggaggc taggaaattt tttgttatca ccttcctggg atccatcatg tggatagcca
     3061 tgttctcata cctcatggtg tggtgggctc accaggttgg tgaaacaata gggatttctg
     3121 aagagattat gggcttgaca atcctagcag caggcacatc aattcctgac ctcatcacca
     3181 gtgtgattgt cgctcggaaa ggcctgggag acatggccgt gtcaagctct gtgggcagta
     3241 acatatttga tatcaccgtg ggcctgcccc ttccttggat gcttttctct tttatcaatg
     3301 gattacagcc tgttcctgtc agtagcaatg gcttgttttg tgccattgtt ttgctttttc
     3361 tcatgctcct gtttgtgatc tcttcaattg cattatgcaa atggagaatg aacaagatcc
     3421 tgggctttac catgttcctc ctgtactttg tattcctgat aatcagtgtg atgttagaag
     3481 atcgaatcat atcctgtcct gtgtctgtct aagtcagtca ctgttgctca aaatggacac
     3541 ggatcagaaa accatgccag aagttactgt
//
LOCUS       XM_032617767             840 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proteasome activator subunit 2 (PSME2),
            mRNA.
ACCESSION   XM_032617767
VERSION     XM_032617767.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               VOSU01000015.1     103675483-103675603 c
            122-154             VOSU01000015.1     103675141-103675173 c
            155-221             VOSU01000015.1     103674637-103674703 c
            222-268             VOSU01000015.1     103674347-103674393 c
            269-269             "N"                1-1
            270-304             VOSU01000015.1     103674312-103674346 c
            305-335             VOSU01000015.1     103674181-103674211 c
            336-382             VOSU01000015.1     103674047-103674093 c
            383-403             VOSU01000015.1     103674025-103674045 c
            404-433             VOSU01000015.1     103673994-103674023 c
            434-502             VOSU01000015.1     103673337-103673405 c
            503-567             VOSU01000015.1     103673118-103673182 c
            568-625             VOSU01000015.1     103672898-103672955 c
            626-712             VOSU01000015.1     103672509-103672595 c
            713-840             VOSU01000015.1     103672291-103672418 c
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..840
                     /gene="PSME2"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     Proteins, and 60% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746343"
     CDS             74..793
                     /gene="PSME2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons; substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:434..436,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: proteasome activator
                     complex subunit 2"
                     /protein_id="XP_032473658.1"
                     /db_xref="GeneID:116746343"
                     /translation="MAKPCGVRLSGEARKQVDVFRQNLFQEAEEFLYRFLPQKIIYLN
                     QLLQVRLPHVTDMTSLRASLDXPIPDPPPKDDEMETDKQEKKEVPKCGFLPGNEKVLA
                     LLALVKPEVWTLKEKCILXSTWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTKVEAF
                     QTTISRYFSERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRAFYAELYH
                     IISSNLEKIVNPKGEEKPSMY"
     misc_feature    107..265
                     /gene="PSME2"
                     /note="Proteasome activator pa28 alpha subunit; Region:
                     PA28_alpha; pfam02251"
                     /db_xref="CDD:460507"
     misc_feature    350..784
                     /gene="PSME2"
                     /note="Proteasome activator pa28 beta subunit; Region:
                     PA28_beta; pfam02252"
                     /db_xref="CDD:460508"
ORIGIN      
        1 ggacgtgggg agtgaaagcg aaagcccagg cggcgagcag ggagaccgga gacctagcag
       61 caactggagc aacatggcca agccttgtgg ggtgcgcctg agcggggaag cccgcaaaca
      121 ggtggatgtc ttcaggcaaa atcttttcca ggaggctgag gaattcctct acagattctt
      181 acctcagaaa atcatatacc tgaatcagct cttgcaagtg agactccctc acgtgactga
      241 catgacttct ctccgggcct cgctggacna tcccatccca gaccctccac ccaaggatga
      301 tgagatggaa acggataagc aagagaagaa agaagtccct aagtgcggct ttctccctgg
      361 gaatgagaag gtcctggcct tgttggccct ggttaagcca gaagtctgga ctctcaaaga
      421 aaaatgcatt ctgtgatcaa catggatcca gcacctcatc cccaaaattg aggatggaaa
      481 tgactttggg gtggcaatcc aggaaaaggt gctggagagg gtaaatgcag tcaagaccaa
      541 agtggaagcc ttccagacaa ccatttccag gtacttctca gaacgtgggg atgctgtggc
      601 caaggcctct aaggagaccc acgtaatgga ttaccgggcc ctggtgcacg agcgagacga
      661 ggcagcctat ggagagctca gggccatggt gctggacctc agggccttct atgctgagct
      721 ttaccatatt ataagcagca acctggagaa aattgtcaac ccaaagggtg aagagaagcc
      781 atctatgtac tgagcccagg gttagaaggg aaataaatga cctatacttt gtgtggataa
//
LOCUS       XM_032617780             303 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus acyl-CoA binding domain containing 7
            (ACBD7), mRNA.
ACCESSION   XM_032617780
VERSION     XM_032617780.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 17% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..303
                     /gene="ACBD7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins"
                     /db_xref="GeneID:116746349"
     CDS             1..303
                     /gene="ACBD7"
                     /codon_start=1
                     /product="acyl-CoA-binding domain-containing protein 7"
                     /protein_id="XP_032473671.1"
                     /db_xref="GeneID:116746349"
                     /translation="MEEEEDVLMRVMKKVKTDFEKAAKDMRKLKTRPDDEELKEPYGL
                     YKQSVIGDVVTECPGLLNLKGKAKWEAWNLNKGLSKADAMSACISKAKELIEKYGI"
     misc_feature    43..297
                     /gene="ACBD7"
                     /note="Acyl CoA binding protein (ACBP) binds thiol esters
                     of long fatty acids and coenzyme A in a one-to-one binding
                     mode with high specificity and affinity. Acyl-CoAs are
                     important intermediates in fatty lipid synthesis and fatty
                     acid degradation and play a...; Region: ACBP; cl00221"
                     /db_xref="CDD:469667"
     misc_feature    order(67..69,76..81,85..87,94..99,103..105,112..117,
                     121..126,133..138,187..192,199..204,259..261)
                     /gene="ACBD7"
                     /note="acyl-CoA binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238248"
     misc_feature    order(79..81,124..126,133..138,202..204,259..261)
                     /gene="ACBD7"
                     /note="CoA binding site [chemical binding]; other site"
                     /db_xref="CDD:238248"
ORIGIN      
        1 atggaagaag aggaggacgt gctcatgagg gtgatgaaga aagtgaagac tgattttgaa
       61 aaggcggcca aagacatgag gaagctgaaa accaggccag atgatgagga actaaaagaa
      121 ccctacgggc tctacaaaca atctgtaatt ggagatgtag ttactgagtg tccaggactg
      181 ttaaatctaa aaggcaaggc taagtgggaa gcttggaacc tcaacaaagg attatcaaag
      241 gcagatgcca tgagtgcctg tatttctaaa gcaaaagagc taatagaaaa atatggaata
      301 tag
//
LOCUS       XM_032617794             963 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus basic leucine zipper ATF-like
            transcription factor (BATF), mRNA.
ACCESSION   XM_032617794
VERSION     XM_032617794.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..963
                     /gene="BATF"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 4 Proteins, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746355"
     CDS             222..599
                     /gene="BATF"
                     /codon_start=1
                     /product="basic leucine zipper transcriptional factor
                     ATF-like"
                     /protein_id="XP_032473685.1"
                     /db_xref="GeneID:116746355"
                     /translation="MPHSSDSSDSSFSRSPPPSKQDSSDDVRKVQRREKNRIAAQKSR
                     QRQTQKADTLHLESEDLEKQNAALRKEIKQLTEEVKYFTSVLSSHEPLCSVLAPGAPS
                     PPEVVYSAHAFHQPHVSSPRFQP"
     misc_feature    297..470
                     /gene="BATF"
                     /note="Basic leucine zipper (bZIP) domain of BATF
                     proteins: a DNA-binding and dimerization domain; Region:
                     bZIP_BATF; cd14701"
                     /db_xref="CDD:269849"
     misc_feature    303..467
                     /gene="BATF"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269849"
     misc_feature    order(315..320,324..332,336..353,357..365)
                     /gene="BATF"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269849"
     misc_feature    order(360..362,369..374,381..386,390..395,402..407,
                     411..416,423..428,432..437,444..449,453..458)
                     /gene="BATF"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269849"
ORIGIN      
        1 agccccaaag caagcgacat gtccctgtgg ggagcagagc ctctgcaccc cagagtgagg
       61 aggccgctgg ggtcagaggt ggctgcaagg cgggctagag gagggccctg cggagggggg
      121 gtgggctggt ggcccgggag cagtcaggaa ggggggccgg ctggggacag gagaacccag
      181 aggcgcgagg ggctgcgtgg agagcccgga agactgcagc catgcctcac agctccgaca
      241 gcagcgactc cagcttcagc cgctctccgc cccccagcaa acaggactca tctgatgatg
      301 tgagaaaagt tcagagaagg gagaaaaatc gcattgctgc ccagaagagt aggcagaggc
      361 agacacagaa agctgacacc ctccatctgg agagtgaaga cctggagaaa cagaatgcag
      421 cgctgcggaa ggagatcaaa cagctcacgg aggaggtgaa gtacttcacg tcggtgctga
      481 gcagccacga gcccctgtgc tcggtgctgg cccccggcgc gccctcgccc cccgaggtgg
      541 tgtacagcgc ccacgccttc caccagcctc acgtcagctc cccgcgcttc cagccctgag
      601 cttcccgagg gcgggagaga gcggagcccc cagccccggc tgctcccagg cctcgggagg
      661 ggcacgcaga ctgtggccag cggcccttgt ccctcagcgc cctctctcga cccggagacc
      721 cggaggcgga ggcctggacc gggatggagc acaggacgca gctgctggac gtgtgaacgg
      781 cctcccgaag cgtggccaac cgcccggcag cgtgggctgg accttcacgt gggtgggagg
      841 ccggatccag agctacgtca agcataacgc ccaagtccca gggcacagag ggaggagggg
      901 tagggaaggg ttatttttct aaataaatgt cttaaaagaa accagtctgg ccagggcttg
      961 aaa
//
LOCUS       XM_032617808            2142 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus vertebrae development associated (VRTN),
            mRNA.
ACCESSION   XM_032617808
VERSION     XM_032617808.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2142
                     /gene="VRTN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins"
                     /db_xref="GeneID:116746360"
     CDS             1..2142
                     /gene="VRTN"
                     /codon_start=1
                     /product="vertnin"
                     /protein_id="XP_032473699.1"
                     /db_xref="GeneID:116746360"
                     /translation="MTSREQLVQQVLQELQEAVESEGLEGLVGAALEAKQVLSSFALP
                     TGREGGPGPQVLEVDSVALSLYPEDAPRNMLPLVCKGEGSLLFEAASMLLWGNAGLSL
                     ELRARTVVEMLLHRHYYLQGMIDSKVMLQAVRYSLCSEESPEMTSLPSTTLEAIFDAD
                     VKATCFPSSFSNVWHLYALASVLQRNIYSIYPLRNLKIRPYFNRVIRPRRCDHMPATL
                     HIMWAGQPLTSQLFRHQYFAPVVGLEEVEAESASPGRAPTPTALAPLPPLAKTLELLN
                     REPGLSYSHLGERYSITKSTFYRWRRQSQEHRQKVATRFSAKHFLQDSFHRGGVVPLQ
                     QFLQRFPEISRSTYYAWKHELLGSGACRALAPKEELTMEELEKLPEQQVAKGLGCSSS
                     AMSSPGVVLMQRAKLYLEHCISLNTLVPYRCFKRRFPGISRSTYYNWRRKALRRNPSF
                     KPAPALSVAGASQPASVGEEALLPWKSEAGEGAGKATGGGSPAPREFQPLRMPLSRWQ
                     RRLRRAARKQVLSGHLPFCRFRLRYPSLSPSTFWVWKSLARGWPRSLSKLQIQAPSLG
                     KGGMKEAEEKREKEAGRNVTAAMAPPAGSLRVAASPGEDPGKALGGPSREGALQEGAT
                     AQGRPPSGSLSSHPVVAAAAGGRDGQVLVMDMLATTKFKAQAKLFLQKRFQSKSFPSY
                     KEFSALFPLTARSTYYMWKRALYDGLTLVDG"
     misc_feature    220..723
                     /gene="VRTN"
                     /note="OTU (ovarian tumor) domain of vertnin and similar
                     proteins; Region: OTU_VRTN; cd22791"
                     /db_xref="CDD:438612"
     misc_feature    order(253..255,478..480,487..489,508..519,592..594,
                     598..600,628..630,634..639)
                     /gene="VRTN"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:438612"
     misc_feature    820..>1338
                     /gene="VRTN"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:468052"
ORIGIN      
        1 atgacatccc gggagcagct ggtgcagcag gtgctgcagg agctgcagga ggcagtggag
       61 tccgagggcc tggagggtct cgttggtgct gctctggagg ccaagcaggt cctgtcttcc
      121 ttcgctctcc ccaccggccg ggagggaggc cccggccccc aggtgctgga ggtggactcg
      181 gtggccctga gcctgtaccc agaggatgct ccccggaaca tgttgccgct ggtgtgcaag
      241 ggcgagggca gcctgctgtt cgaggcggcc agcatgctgc tgtggggcaa cgcgggcctc
      301 agcctggagc tgcgggcccg cacggtggtg gagatgctgc tgcaccggca ctactacctc
      361 cagggcatga ttgactccaa ggtgatgctg caggccgtgc gctattccct gtgctctgag
      421 gagtccccgg agatgaccag cctgccgtcc accacgctag aggccatctt tgatgcggac
      481 gtcaaggcca cctgctttcc tagcagcttc tccaacgtgt ggcacttgta cgccctcgcc
      541 tccgtccttc agcgcaacat ctactccatc taccccttgc gcaacctcaa gatccggcca
      601 tactttaacc gcgtcatccg gccccgccgc tgcgaccaca tgcccgccac gctgcacatc
      661 atgtgggccg gccagcccct caccagccag ctcttccgcc accagtactt tgcccccgtg
      721 gtggggctgg aggaggtgga ggctgaaagt gccagccccg gccgggcccc gactcccact
      781 gccctggccc cgctgccccc gctcgccaag accctggagc tgcttaaccg ggaacctggc
      841 ctcagctact cccacctcgg tgagcgctac agcatcacca agagcacctt ctaccgctgg
      901 cggcggcagt cccaggagca ccggcagaag gtggccaccc gcttctcggc caagcacttc
      961 ctgcaggaca gcttccaccg cgggggtgtc gtgccgctgc agcagttcct ccagaggttc
     1021 cccgagatct cccgctccac ctattatgcc tggaagcacg agctcttggg ttctggcgcc
     1081 tgccgtgccc tggcccccaa ggaggagctg accatggagg agctggaaaa gctgccagag
     1141 cagcaggttg ccaaggggct ggggtgctcc tcgtcggcca tgtcaagccc tggagtggtc
     1201 ttaatgcagc gggccaagtt gtacctggag cactgcatct ccctgaatac actggtaccc
     1261 tatcgctgct tcaaacgcag gttccccggc atctcccggt ccacctacta caattggcgc
     1321 cgaaaggctc tccgaagaaa ccccagcttc aagcctgcac cagccctctc ggtagccggg
     1381 gcttcccagc cagcatctgt tggggaagag gccttgctcc cttggaagag tgaggcagga
     1441 gaaggggcag ggaaagcaac gggtggggga tcacctgccc cccgggagtt ccaacccctg
     1501 aggatgcccc tgtcccgttg gcagaggcgc ctgcgcaggg cagcccgcaa gcaggtgctc
     1561 agtgggcacc tccctttctg tcgcttccgc ctccgctacc cgagcctgtc tccctccacc
     1621 ttttgggtct ggaagagcct tgcccggggc tggcccagaa gtctgtccaa gctccagata
     1681 caggccccca gcttgggcaa agggggcatg aaggaagcgg aggagaaacg ggagaaagaa
     1741 gctggtagga atgtgacagc tgccatggcc ccacctgcag ggagcctgcg ggtggcggct
     1801 tctccaggag aggatccagg gaaggccctg ggagggcctt ccagagaggg ggccctgcaa
     1861 gagggggcca cggcccaggg ccggcccccc agtgggtccc tgtccagcca ccctgtggtg
     1921 gcagcagcgg cgggtggcag ggacggccag gtgctggtga tggacatgct cgccaccacg
     1981 aagttcaagg cccaggccaa gctgttcctg cagaagcgct tccagtccaa gagcttcccc
     2041 tcctacaagg agttcagtgc cctcttcccc ctcaccgccc gctctaccta ctacatgtgg
     2101 aagcgtgccc tctacgatgg cctcaccctg gtggatggct ga
//
LOCUS       XM_032617822            1868 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ras-related protein Rap-2a-like
            (LOC116746364), mRNA.
ACCESSION   XM_032617822
VERSION     XM_032617822.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1868
                     /gene="LOC116746364"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746364"
     CDS             137..739
                     /gene="LOC116746364"
                     /codon_start=1
                     /product="ras-related protein Rap-2a-like"
                     /protein_id="XP_032473713.1"
                     /db_xref="GeneID:116746364"
                     /translation="MAGLGPRPAKGYRVVLLGSVAVGKTALATQFACGSFPEQCEPSV
                     EELFSKVIEVNAAPALLEIVDTVGAEHLVTLKDLYIKNSDGFVVLYSVCSEASFEAVR
                     PLRERMGRLRGSKAVPLVLVGTKADLDAQRQVLTARGRALAREWRCPFLEVTAKSKLM
                     VDQVFTQVVREMEALAPPEEEVPAVPTNAQETWPSERFIG"
     misc_feature    170..652
                     /gene="LOC116746364"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; Region: P-loop
                     containing Nucleoside Triphosphate Hydrolases; cl38936"
                     /db_xref="CDD:476819"
     misc_feature    188..211
                     /gene="LOC116746364"
                     /note="G1 box; other site"
                     /db_xref="CDD:133376"
     misc_feature    order(194..214,338..340,506..511,515..517,596..604)
                     /gene="LOC116746364"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133376"
     misc_feature    263..265
                     /gene="LOC116746364"
                     /note="G2 box; other site"
                     /db_xref="CDD:133376"
     misc_feature    272..280
                     /gene="LOC116746364"
                     /note="Switch I region; other site"
                     /db_xref="CDD:133376"
     misc_feature    329..340
                     /gene="LOC116746364"
                     /note="G3 box; other site"
                     /db_xref="CDD:133376"
     misc_feature    order(335..340,386..391)
                     /gene="LOC116746364"
                     /note="Switch II region; other site"
                     /db_xref="CDD:133376"
     misc_feature    506..517
                     /gene="LOC116746364"
                     /note="G4 box; other site"
                     /db_xref="CDD:133376"
     misc_feature    596..604
                     /gene="LOC116746364"
                     /note="G5 box; other site"
                     /db_xref="CDD:133376"
ORIGIN      
        1 gatttcgtcc ccgcccctct cccccctgct tctccctccc cggccctgcc tccacgcccc
       61 cgcggcccag gcggccgggc cccagcctcc gcgcgccatt cctccggccg cgcgtccagc
      121 cagccgcgcc tgggccatgg cgggcctggg gccgcgaccc gccaagggct accgggtggt
      181 gctgctcggc agcgtggccg tgggcaagac ggcgctcgcc acgcagttcg cctgcggcag
      241 cttccccgag cagtgtgagc cgtcggtgga ggagctcttc agcaaggtga tcgaggtgaa
      301 cgcggcgccc gccctgctgg agatcgtgga cacggtgggc gccgagcacc tggtcaccct
      361 caaggacctg tacattaaga acagcgacgg cttcgtggtg ctctacagcg tgtgcagcga
      421 ggcctcgttc gaggcggtgc ggccgctgcg ggagcgcatg ggccggctgc gggggtccaa
      481 ggccgtgccg ctggttctcg tgggcaccaa ggccgacctg gacgcccagc gccaggtgct
      541 gacggcgcgg ggccgcgcgc tggcccgcga gtggcggtgc ccgttcctgg aggtcacggc
      601 caagagcaaa ctcatggtgg accaggtgtt cacgcaggtg gtgcgcgaga tggaggccct
      661 ggccccgccc gaggaagagg ttccggccgt ccccaccaac gcgcaggaga cgtggccatc
      721 ggaaaggttc atcggctgat gtgcaaacca ttcatgattc ctgtattcat cgcttttctt
      781 gatttctgaa gctcacttta ctcttctgcc tttttgaata aagttatcca gctgtaaaca
      841 agtggttgct tctatatatt gactcagatc ggtgcttcag actgtccaga gcttcttaaa
      901 tattttgttg aaaactttgt ttacctctga cagtgctgga agaagaaatt aaaaatcgat
      961 tttcttttct tgtatggaga gagtattacc cttttcttca agtgggattt gttgcaggat
     1021 tctttttttt ttttttcttt ttggtcataa ttaaaacctt caaatgtcat ctgacatttg
     1081 acattgattg aggaacatga cctaaatcga agctttccaa tccatgaggc tttcatgtgt
     1141 tcccctctca tttacagcct tgaattgcag cagtaatatt ttcctctctg cgtatttcta
     1201 aatatagtta tgacatacat agcattggtt tgaaagggat gttgtatacc ctgggagggg
     1261 aaaaatcaac tgtgtactta ggcaaagaca gttcagctct gccttcagtt ttgtaattga
     1321 catctagtcg atttctgcat ctgtgaatta agtgaaaata aaatgactct agaagttgat
     1381 agtttttaat atttgtcttt ctagaaccta aagctacaat tcctaaagtt tccatacacc
     1441 atatctttgc ttttcagtta ttttcccgga aaagttagtt gctagggtga aaatggcacc
     1501 acatcttttt gtgtttttgc agaagtgctt tctgcagcta gtgttatttt ccttgtcact
     1561 tgccagagtc ggatatgttg tctgaatacc tgcctagttt aacagtgaca ggggtgctga
     1621 agtagaagca aaacgtgaag aatctttttg tatagttttc aagtaacgat aaaagagact
     1681 tttcttgtac tggtttaaaa atattattgt tttataattt taaaaactgg tctttgatat
     1741 ggttacttgt gtttatttgc acaagttaac aattttacct cagccgttgc aacaaaattt
     1801 tcaaatttac aaacctaact tagccatttg agcaaacttc taaaaataat aaaaaagaaa
     1861 gctccgtg
//
LOCUS       XM_032617834            1199 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leukotriene B4 receptor (LTB4R), mRNA.
ACCESSION   XM_032617834
VERSION     XM_032617834.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-119               VOSU01000015.1     103827048-103827166
            120-515             VOSU01000015.1     103827770-103828165
            516-516             "N"                1-1
            517-938             VOSU01000015.1     103828166-103828587
            939-939             "N"                1-1
            940-1199            VOSU01000015.1     103828588-103828847
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1199
                     /gene="LTB4R"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins, and 17% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116746371"
     CDS             129..1199
                     /gene="LTB4R"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: leukotriene B4 receptor 1"
                     /protein_id="XP_032473725.1"
                     /db_xref="GeneID:116746371"
                     /translation="MATNATSPEAPSSPGVMFISLLVIIVLSVALAVGLPGNSFVVWS
                     ILVEMRKRSVTALLVLHLALADLAVLLTAPFFLYYTVQGTWTFGLADCRLFHYVCGVS
                     MYASILLITAMSLDRSLVVALPSVSQKXRTKTVAWRALAGIWVVSVLLATPVILYRKV
                     TLGPDNRSLVCFPKYPSEAHRAFHLFFEVVTGFLLPFLAVVASYSDIRRRLRVRRFRR
                     SLCTGRLLAFIILAFAAFWLPYHVVNLAEGVRALAGKTLGSRPESQRLHLTRXALRTL
                     AFLSSSVNPVLCACAAGGPQRSAGTAFVAKLLEGTGSEASSSRRGGTLAQTVRGAPAS
                     PEPGPAESLTAPTNPLERSEVS"
     misc_feature    189..1028
                     /gene="LTB4R"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    195..269
                     /gene="LTB4R"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:319898"
     misc_feature    294..359
                     /gene="LTB4R"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:319898"
     misc_feature    405..473
                     /gene="LTB4R"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:319898"
     misc_feature    540..590
                     /gene="LTB4R"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:319898"
     misc_feature    672..743
                     /gene="LTB4R"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:319898"
     misc_feature    795..863
                     /gene="LTB4R"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:319898"
     misc_feature    927..1004
                     /gene="LTB4R"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:319898"
ORIGIN      
        1 agaacctgga ccccaggcca ggcccctggc cctgggacag atctggggat aggctacacc
       61 actctgttct caccctggga ttgacaccag cttctaacca gtgctcggca aagccttaag
      121 tccttgcaat ggccacgaac gctacatctc ctgaagcacc ctcgtcacca ggtgtcatgt
      181 tcatctctct gctggttatc atcgtactgt cagtagcact ggctgtgggg ctgcccggca
      241 acagctttgt ggtgtggagc atcctggtag agatgcggaa gcgctctgtc actgccctgc
      301 tggtgctaca cttggccctg gccgacttgg ccgtattgct cactgccccc tttttcctct
      361 actacacggt ccaaggcacc tggacttttg gactggctga ctgccgcctg ttccactatg
      421 tctgcggagt cagcatgtat gccagcatcc tgcttatcac ggccatgagc ctggaccgct
      481 cgctggtggt ggccctcccc tctgtgtccc agaaanctcg caccaagaca gttgcctggc
      541 gggcgctagc aggcatctgg gtggtgtctg tcctgctggc cacacccgtc atcttgtacc
      601 gcaaagtgac gttgggtccg gacaacagga gcctggtctg cttcccgaag taccccagcg
      661 aagcacatag ggctttccat ctgttcttcg aggtggtcac cggcttcctg ctgcccttcc
      721 tggccgtggt ggccagctac tccgacatcc ggcgccggct gcgggtccgg cgcttccgcc
      781 gcagcctctg caccggccgc ctgctggcct ttatcatcct ggccttcgct gccttctggc
      841 tgccctacca cgtggtgaac ctggccgagg gggtccgagc gctggcgggc aagacattgg
      901 ggtcccggcc tgagagtcag cggctgcacc tgacccgcna agcgctcaga acgctggcct
      961 tcctgagcag cagcgtgaac cccgtgctgt gtgcatgcgc tgccggcggc ccgcagcgct
     1021 cggctggcac ggccttcgtc gccaagctgt tggagggcac cggctccgag gcgtccagca
     1081 gccgccgcgg gggcaccctg gcccagacgg tgaggggtgc acccgcctct cccgaacctg
     1141 gccccgccga gagcctcact gcccccacca accctctcga gcgaagcgaa gtcagctag
//
LOCUS       XM_032617847             423 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus oocyte-expressed protein homolog
            (LOC116746377), mRNA.
ACCESSION   XM_032617847
VERSION     XM_032617847.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..423
                     /gene="LOC116746377"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins"
                     /db_xref="GeneID:116746377"
     CDS             1..423
                     /gene="LOC116746377"
                     /codon_start=1
                     /product="oocyte-expressed protein homolog"
                     /protein_id="XP_032473738.1"
                     /db_xref="GeneID:116746377"
                     /translation="MVDNTGATEARGDGLLGFPLPPPRIRSRPWWFPAQELKNPLVFS
                     LEACMTNSIFGPDRAVVPEMEWMSQALLTVDAVHAGKLVEITVFGRPAVQRRVKSVLL
                     SLVSSHREQHARAENMEQLEEFLKAQAPGPQVPQSTVA"
     misc_feature    82..333
                     /gene="LOC116746377"
                     /note="KH-like RNA-binding domain; Region: MOEP19;
                     pfam16005"
                     /db_xref="CDD:464969"
ORIGIN      
        1 atggtcgaca acacgggcgc caccgaggcc cggggggacg gactgctggg gttcccactt
       61 ccgccaccac ggattcgctc ccggccgtgg tggtttcctg cgcaggagct gaagaacccg
      121 ctggtgtttt ctttggaggc gtgtatgacc aactcgatct tcggcccaga ccgagccgtg
      181 gttccggaaa tggagtggat gagccaggcc ctgctgacgg tggacgcagt tcacgccggg
      241 aagttggtgg aaatcaccgt cttcgggcgg ccagctgtcc agcgccgggt gaagagcgtg
      301 ctcctgagcc tggtgtcgag tcaccgggag cagcacgccc gagctgagaa catggaacaa
      361 ctcgaggagt tcttgaaggc ccaggcacca ggtccccagg tcccccagag tactgttgca
      421 taa
//
LOCUS       XR_004347690             605 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746382
            (LOC116746382), ncRNA.
ACCESSION   XR_004347690
VERSION     XR_004347690.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..605
                     /gene="LOC116746382"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746382"
     ncRNA           1..605
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746382"
                     /product="uncharacterized LOC116746382"
                     /db_xref="GeneID:116746382"
ORIGIN      
        1 ttaacttttg aaatctcttg tcatgagtga atctacacta ctcggtttct tgccctgctc
       61 tggagctctg ccatgcctga actacattct ttaagataga agaatatcca taactgggag
      121 agtcaactca aaatagcaat gatgacaaca atagtgcagt gacgacctag actgagcact
      181 tactgtgcat cagagactgt gtcaagcact gattttctgt gatccttaca gcagctggag
      241 gagagatcct tcggagagcc cattctggcg gaccagtttg caccctgagc ttgctgagat
      301 gagacaatga gacaacttct ttcttgggag aaagaagaga aaagcagaag gcaaggggga
      361 aaaaaagaac aaagaaagag acaaaggaac gaaggaagag aaggagggag ggaggcaggg
      421 agaataattt tggtgggcca atctgaaggc tgatatagct tcccactaaa ggtttggtct
      481 tggcaagtga tgctggagag agaaggaagg gtgtcttcag attttctagc aaagatggct
      541 ggaatttttc ctaatcactc tcaactgcaa accttggaaa gaacattaaa ccaaaaaggg
      601 aacta
//
LOCUS       XR_004347691            2716 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746385
            (LOC116746385), transcript variant X1, ncRNA.
ACCESSION   XR_004347691
VERSION     XR_004347691.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2716
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2716
                     /gene="LOC116746385"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746385"
     ncRNA           1..2716
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746385"
                     /product="uncharacterized LOC116746385, transcript variant
                     X1"
                     /db_xref="GeneID:116746385"
ORIGIN      
        1 ccgccttgga cgacttctgc tctggtgcag actccgggcg gtagaagcct ccacgcgggt
       61 tgacccgtgg acttggttta ggacctgtgc cactggcctc ttcattttcc agccgcatcc
      121 gttctggagg gttcccgaga gcagcgcgga gcggactccg tgcttcccgc ggtcccagac
      181 ggccctgcta ccgaggctgt aaaatttctc agggcaggaa atttttctgt catgttgcct
      241 gctgtgcctc cagccctggg atccaggcca ggcccataat agcagaatgc agccaggagg
      301 aaagtcacca cggaccctgg agccagagga tcggtgactc agggccattg cccaggtgcc
      361 gtaagtaaac cagccgcagg ttccaactca ggggtgctcg ctgagttccg gtgcctctgt
      421 gggcaagggc cccatggccc cagattctct ttgcatgatg aggtaggctt acttttccca
      481 acacacagct tgccatcctt ttcgtggttt tcccctgcac ccacctggca cctccaattt
      541 ggtgccattc ctcctggaat ggagtgtttt cagttgggtg ccgtgcccat ggcccttggc
      601 ccggagagtg ggtcgcttgc tccatcagaa gacccaaagc acagtgggag tctaaatacc
      661 aaagaccacg ttgagtatct tcgagcgcat ttgacggctg tatccacccc tcgggcgagt
      721 acagatgaag tcaggacagt tggtaagcaa gaatgagcgc tcagaccagc ccggtgagct
      781 ctgcagggtg ggctcggcac ccctcccctc ccccaggctg cttctcctct ctgctctgcc
      841 ccacgcttgc ttgtaccacc ctgcacagag tcagcggctg gtgcagctct ggggacccat
      901 ggaggtcaca gtcctcatgg gtccttgagg atgcaaagac ccccccaaat gccagggctg
      961 agtgagaccc ttgagtttat tcccctcctc ttccgtccct ctactcacat cctcatacac
     1021 gtaagaaaac tgacatccgg gggcaggggg tagaatgctt tgctgtgact gtttttccta
     1081 agggtagtct taagctttgg ggtctagacc acctctggca aataagcagt ttccctcttg
     1141 gtaatgacag gggtgaccca gcaccccagg actacgggaa cgccaagcgg gactcaatac
     1201 ctcatttctc aggggcttgc tgggggtgac gctgctgccc tgctccagag cttctagaag
     1261 ccagtgcctt cgctctgcag tgccagctca tagtaggtgc tcagctaacg cctggatcaa
     1321 agctgggctc agacaccagc gcaaagtaag tattcgacct gggagtgtat tgaatcaggt
     1381 ctttattgcc aggaggaagc acacaggagg cactgggagg acatttgtgg gatgaataaa
     1441 taaaagcatg ctctttgagg gaataaagga gcagagaaac caagaacctg ggggagacgg
     1501 acataaatct ccagcaagcg ccgccaagct tctgcagtca aggctgctga aaagaccctg
     1561 cggagacaga ggggccattt gtcaccgcgg ggacgggctt gagggccagg aagcaagggc
     1621 aggatggaac cttgttcatc actttcgcat tatcccggcg gcaatggagg ggagcccacg
     1681 gccacgccgc ctgcctggcg gaatgagtgc cgggctaggg gtggagaagg accccgagga
     1741 ggggcaggct gggctggagg aggaggcagg catctcagag cccacctcat gcccttggtg
     1801 ctgcagttgt tgttttcata cctatgagac cctatccagg gctccgctcc aatgccactt
     1861 cctacaggaa gccctccctg atccacccct ccacacagaa cctcaatttg caatcagatg
     1921 tcagtcctcg gatcctttga tcaataggta tctcctggcc cagcctgcac gctccatggg
     1981 gacaggggct gtttctggta tggtggctgt gaggcccctg tgcttggttc ggcccgggga
     2041 aggcactgca tgttgctggt tagccctgtc ttgcctttgc aggcactctg gacctggcac
     2101 tcgacaggtg cccagtgcat ggacatccca tgggcggagc cttgggttga ccccaaccag
     2161 gagccaaggg ctgggccaga ggtggctgca aggaccactt ctgcctagag agatgtgact
     2221 gtgagctcgg gatcctggcc caaccctgga ggcattcctt ggatctgtgg ccagcttgct
     2281 tactctgaac ccatcttgga gtctcagccc tttcctctcc tgatctcatc tcctgcttca
     2341 cacgactgca ccacggtccc tggtggtgat cgaggcagag ggcacccatg ccccaggaga
     2401 cagatgcaca gcgccctccc cgcctcaccc aggaagctgg gggaggcccc cgcaccccct
     2461 accgtttgaa gcacccggac ttgagtaccg ggggaccacc ccgcggcggg aaggaccggc
     2521 cttcacgtgg accgtgggga ggaccgagga ccgtatgggc tcatggaggt gccaaggacc
     2581 atgccctgcc ccacagacag cggggctggg aggtgaaaac gctggttaga aggacgtaag
     2641 aattcctgct cttccttttg aagcactttg aatcttgtca gaccatttga gtaataaaca
     2701 cacatcataa aaatct
//
LOCUS       XR_004347694            2225 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746385
            (LOC116746385), transcript variant X2, ncRNA.
ACCESSION   XR_004347694
VERSION     XR_004347694.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2225
                     /gene="LOC116746385"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746385"
     ncRNA           1..2225
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746385"
                     /product="uncharacterized LOC116746385, transcript variant
                     X2"
                     /db_xref="GeneID:116746385"
ORIGIN      
        1 ccgccttgga cgacttctgc tctggtgcag actccgggcg gtagaagcct ccacgcgggt
       61 tgacccgtgg acttggttta ggacctgtgc cactggcctc ttcattttcc agccgcatcc
      121 gttctggagg gttcccgaga gcagcgcgga gcggactccg tgcttcccgc ggtcccagac
      181 ggccctgcta ccgaggctgt aaaatttctc agggcaggaa atttttctgt catgttgcct
      241 gctgtgcctc cagccctggg atccaggcca ggcccataat agcagaatgc agccaggagg
      301 aaagtcacca cggaccctgg agccagagga tcggtgactc agggccattg cccaggtgcc
      361 gtaagtaaac cagccgcagg ttccaactca ggggtgctcg ctgagttccg gtgcctctgt
      421 gggcaagggc cccatggccc cagattctct ttgcatgatg aggtaggctt acttttccca
      481 acacacagct tgccatcctt ttcgtggttt tcccctgcac ccacctggca cctccaattt
      541 ggtgccattc ctcctggaat ggagtgtttt cagttgggtg ccgtgcccat ggcccttggc
      601 ccggagagtg ggtcgcttgc tccatcagaa gacccaaagc acagtgggag tctaaatacc
      661 aaagaccacg ttgagtatct tcgagcgcat ttgacggctg tatccacccc tcgggcgagt
      721 acagatgaag tcaggacagt tggggcttgc tgggggtgac gctgctgccc tgctccagag
      781 cttctagaag ccagtgcctt cgctctgcag tgccagctca tagtaggtgc tcagctaacg
      841 cctggatcaa agctgggctc agacaccagc gcaaagtaag tattcgacct gggagtgtat
      901 tgaatcaggt ctttattgcc aggaggaagc acacaggagg cactgggagg acatttgtgg
      961 gatgaataaa taaaagcatg ctctttgagg gaataaagga gcagagaaac caagaacctg
     1021 ggggagacgg acataaatct ccagcaagcg ccgccaagct tctgcagtca aggctgctga
     1081 aaagaccctg cggagacaga ggggccattt gtcaccgcgg ggacgggctt gagggccagg
     1141 aagcaagggc aggatggaac cttgttcatc actttcgcat tatcccggcg gcaatggagg
     1201 ggagcccacg gccacgccgc ctgcctggcg gaatgagtgc cgggctaggg gtggagaagg
     1261 accccgagga ggggcaggct gggctggagg aggaggcagg catctcagag cccacctcat
     1321 gcccttggtg ctgcagttgt tgttttcata cctatgagac cctatccagg gctccgctcc
     1381 aatgccactt cctacaggaa gccctccctg atccacccct ccacacagaa cctcaatttg
     1441 caatcagatg tcagtcctcg gatcctttga tcaataggta tctcctggcc cagcctgcac
     1501 gctccatggg gacaggggct gtttctggta tggtggctgt gaggcccctg tgcttggttc
     1561 ggcccgggga aggcactgca tgttgctggt tagccctgtc ttgcctttgc aggcactctg
     1621 gacctggcac tcgacaggtg cccagtgcat ggacatccca tgggcggagc cttgggttga
     1681 ccccaaccag gagccaaggg ctgggccaga ggtggctgca aggaccactt ctgcctagag
     1741 agatgtgact gtgagctcgg gatcctggcc caaccctgga ggcattcctt ggatctgtgg
     1801 ccagcttgct tactctgaac ccatcttgga gtctcagccc tttcctctcc tgatctcatc
     1861 tcctgcttca cacgactgca ccacggtccc tggtggtgat cgaggcagag ggcacccatg
     1921 ccccaggaga cagatgcaca gcgccctccc cgcctcaccc aggaagctgg gggaggcccc
     1981 cgcaccccct accgtttgaa gcacccggac ttgagtaccg ggggaccacc ccgcggcggg
     2041 aaggaccggc cttcacgtgg accgtgggga ggaccgagga ccgtatgggc tcatggaggt
     2101 gccaaggacc atgccctgcc ccacagacag cggggctggg aggtgaaaac gctggttaga
     2161 aggacgtaag aattcctgct cttccttttg aagcactttg aatcttgtca gaccatttga
     2221 gtaat
//
LOCUS       XM_032617879            1992 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus iodothyronine deiodinase 3 (DIO3), mRNA.
ACCESSION   XM_032617879
VERSION     XM_032617879.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1992
                     /gene="DIO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746393"
     CDS             16..930
                     /gene="DIO3"
                     /codon_start=1
                     /transl_except=(pos:523..525,aa:Sec)
                     /product="thyroxine 5-deiodinase"
                     /protein_id="XP_032473770.1"
                     /db_xref="GeneID:116746393"
                     /translation="MPRQATPRLVVGEGRGSQGALGGAATMLRSLLLHSLRLCAQTAS
                     CLVLFPRFLGTAFMLWLLDFLCIRKHLLGRRRRGQPQTEVELNSDGEEMPPDDPPICV
                     SDDNRLCTLASLRAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQNQHILDYARGNRP
                     LVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQ
                     HRSLEDRVSAARVLQQGAPECSLVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRG
                     PDGYQVSELRTWLECYDEKLHGPQTRRV"
     misc_feature    130..894
                     /gene="DIO3"
                     /note="Iodothyronine deiodinase; Region: T4_deiodinase;
                     pfam00837"
                     /db_xref="CDD:279210"
ORIGIN      
        1 agagcccaag cccagatgcc tcgccaagcc accccgcgtt tggtggtggg ggaaggtaga
       61 gggtcccagg gggctctggg gggcgccgcc accatgctcc gctccctgct gcttcactcc
      121 ctgaggctct gcgcccagac cgcctcgtgc ctcgtgctct tcccgcgctt cctcggcacg
      181 gccttcatgc tctggctgct cgacttcctg tgcatccgca agcatttact gggccgccga
      241 cgccggggtc agccccaaac tgaagtggag ctcaacagcg atggcgagga gatgcccccc
      301 gacgacccgc ctatctgcgt gtccgacgac aaccgcctgt gcaccctggc gtcgctgagg
      361 gcagtgtggc acggccagaa gttggatttc ttcaagcagg cacacgaagg cggtccggcg
      421 cccaactccg aggtggtcct gcccgacggc ttccagaacc agcacatcct cgactacgcc
      481 cgaggaaacc gcccgctggt gctcaatttc ggcagctgca cctgaccacc gttcatggcg
      541 cgtatgagcg ccttccagcg cctggtcacc aagtatcagc gcgacgtcga cttcctcatc
      601 atctacattg aggaagcgca cccctcggac ggctgggtca ccacggactc tccctacagc
      661 atcccgcagc accgcagcct ggaggaccgg gtcagcgcag cgcgggtact gcagcaaggt
      721 gctcccgaat gctctctcgt cctcgacacc atggccaact ctagcagctc cgcctacggc
      781 gcctacttcg agcgcctcta tgtcatccag agtggcacca ttatgtacca gggcggccgt
      841 ggccctgacg gctaccaggt ctccgagctg cgcacctggc tggagtgcta cgatgaaaag
      901 ctgcatggcc ctcagacccg tcgagtgtaa acagccaatg gacaattgac tgaacttggc
      961 gggccatgcc ttcgagcctt cgaagcccac gtgcaaacgc acccaaacaa aggcaggctt
     1021 ggtgagggcc cagtgacaca gctgtgctga gccatggatc tgaggctgag tctgcgctct
     1081 cagccaagcc acctgaagac tctcctccgc cccgcccccc tccccccccc agactctgcc
     1141 tttgtgactg cccttgcctg tacttgcctg gctcgctcta aatccccttc tgagtgcgga
     1201 ggcagcgcca cccttgcctg tgtgcccctg gacttgtcct cgcagaggcc cctgccacga
     1261 gatctcacac gccctcctca gaagagaata gccagtgtgc ctttagccag gcgcagtggc
     1321 cccgcgcgaa gagactggct gcgcccgcgc gccctgagcg cagctgggtt ccagcagcgc
     1381 gagccgctcg ccttagttgc ctggcaccca cacctgtcgc gcacggggaa gggatgccct
     1441 gctgcttttg tgtctatttc ttgtccccga gttgggggag gaggtttggg gtgggcaggg
     1501 gtgggcaggg ttatttcccc tccctttatt ttcggtgctc acgagccccg ctgctgatga
     1561 cgaactgtct ctaactggtc ttgaccacga gctggttctg aattgcagga ggctcgcagt
     1621 agcgcctaaa acgagagggg aaagtgctct gggtttccat gtggaaaccg cgtcgacggg
     1681 gtgggagagg gaggttgggg aactgcttcg ggacagagga aaacggcttg ggaggcattg
     1741 gcgaggttcg cagcgcccca gggagaagga aggggctggg gctcctggcg cacggggttt
     1801 gagtggtgga gtctgggggg gagagcctgg gaaccccgaa cgaggggtct cccaggcaaa
     1861 gttgccgact gcggggccag aagacggggg ggccctgatc cgaaggccat ttagtgagtg
     1921 ttttactgga aatattccct gtatataaac ttctttttac actacaataa taaaggcttg
     1981 aagtaaattg ct
//
LOCUS       XM_032617901             978 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ornithine decarboxylase antizyme 2-like
            (LOC116746404), mRNA.
ACCESSION   XM_032617901
VERSION     XM_032617901.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-265               VOSU01000015.1     67594865-67595129   c
            266-608             VOSU01000015.1     67594521-67594863   c
            609-978             VOSU01000015.1     67593911-67594280   c
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..978
                     /gene="LOC116746404"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 long SRA read, 18 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746404"
     CDS             170..739
                     /gene="LOC116746404"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: ornithine decarboxylase
                     antizyme 2-like"
                     /protein_id="XP_032473792.1"
                     /db_xref="GeneID:116746404"
                     /translation="MINTQDSSILPLSNCLQLQCCRNILPGPLWCADAPHPLSKIPGG
                     RGGGRDPSLSALIYKDEKLTVTQDLPVNDGKPHIVHFQYEVTEVNVTSWDAVLSSQSL
                     FVEIPDGLLADGSKEGLLALLESAEEKMKVNYVFICFRKGWEDRAPLLKTFSFLGFEI
                     VHPGHPCVPSRPDVMFMVYPLDENLSDED"
     misc_feature    <467..712
                     /gene="LOC116746404"
                     /note="Ornithine decarboxylase antizyme; Region: ODC_AZ;
                     pfam02100"
                     /db_xref="CDD:460445"
ORIGIN      
        1 gaggcaggcg ctcgctgagg caggaggagg gctctgggcc cgctgcctga cagggactta
       61 gcccgcagag ctcggccctg cgcgcgcgcg cgcgacccca cacccgccca ctcatccacc
      121 tacccactcc ctgcgccgcc tcttcccacc ctgagcagag ccgccgagga tgataaacac
      181 ccaggacagt agtattttgc ctttgagtaa ctgtctccag ctccagtgct gcaggaacat
      241 tcttccgggg cctctgtggt gtgccgatgc ccctcaccca ctgtcgaaga tccccggtgg
      301 gcgagggggc ggcagggatc cttctctctc agctctaata tataaggacg agaagctcac
      361 tgtgacccag gacctccctg tgaacgatgg aaaacctcac atcgtccact tccagtatga
      421 ggtcaccgag gtgaatgtca cttcctggga tgcagtcctg tctagccaga gcctgtttgt
      481 agaaatccca gatggattat tagctgatgg gagcaaagaa ggattgttag cactgctaga
      541 gtctgccgaa gagaagatga aagtgaacta cgtcttcatc tgcttcagga agggctggga
      601 agacagagct ccactcctga agaccttcag cttcttgggc tttgagattg tgcatccagg
      661 ccatccctgt gtcccctctc gaccagatgt gatgttcatg gtttaccccc tggacgagaa
      721 cttgtctgat gaggactaat ggtcatagag gatgctttgc ccaagagcca cagtggggga
      781 agaggggaag ttaggcagcc ctgggacaga ggagggggct tcttgctgtc tagggaagga
      841 cgctgaggcg ctgagggtga gggttgcctg ttgtgctctc ggcgttgact cgttgaaatt
      901 gttttccata aagaacagta taaacatatt attcacatgt aatcaccaat agtaaatgaa
      961 gatgtttatg aactggca
//
LOCUS       XM_032617916            3045 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X1, mRNA.
ACCESSION   XM_032617916
VERSION     XM_032617916.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3045
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3045
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746410"
     CDS             291..2096
                     /gene="SETD3"
                     /codon_start=1
                     /product="actin-histidine N-methyltransferase isoform X1"
                     /protein_id="XP_032473807.1"
                     /db_xref="GeneID:116746410"
                     /translation="MAPLSQKMGKKSRVKTQKSGTGATASVSPKETLNLTSELLQKCS
                     SPAPGPGKEWEEYVQIRSLVEKIRKKQKGLSVTFDGKREDYFPDLMKWASENGASVEG
                     FEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMG
                     NITLAFHLLCERADPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYK
                     NTARQYAYFYKVIQTHPHAHKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLA
                     LIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGF
                     FFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFL
                     RVFCMTEEELKEHLLGDNAIDRIFTLGNSEYPVSWDNEVKLWTFLEDRASLLLKTYKT
                     TIEEDKSFLKNHALSVRATMAIKLRLGEKEILEKAVKSAAANREHCRRQVEGHAPLPK
                     YEESNPGLLEGVADSRLPLVLRDPDGEAGAQEALTLTEAVRRAKAAEHGLVNGENSIP
                     NGTSSEKESLNQEESKRATGDAKESSSDSAEEVGK"
     misc_feature    549..1298
                     /gene="SETD3"
                     /note="SET domain found in SET domain-containing protein 3
                     (SETD3) and similar proteins; Region: SET_SETD3; cd19176"
                     /db_xref="CDD:380953"
     misc_feature    order(621..623,627..629,849..851,1068..1073,1134..1148,
                     1248..1250,1284..1286,1290..1292,1296..1298)
                     /gene="SETD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380953"
     misc_feature    order(624..629,678..680,1062..1079,1134..1148,1167..1169,
                     1242..1253)
                     /gene="SETD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380953"
     misc_feature    1341..1736
                     /gene="SETD3"
                     /note="Rubisco LSMT substrate-binding; Region:
                     Rubis-subs-bind; pfam09273"
                     /db_xref="CDD:462737"
ORIGIN      
        1 gggaggagag aatatatagg tttttgtggc catgtgatag tttgtgtgat acatgaatgt
       61 agatgtaact tctatctatg tagtatcaca gaatactagg atatacaatg aagtctatgt
      121 aatttgaaaa aattctagag taaaagttgc ttctactgta gtttttgtag gtgaaaagga
      181 acgaactttt cttccagaga ctacaaagca gctttttttt ttcacatttg agtgcctcca
      241 aatactagta ttagttacac gttgcttttt ctggagggaa acttcaggat atggcacctt
      301 tgagtcagaa aatgggtaag aagagtcgag taaaaacgca gaaatcaggc actggtgcta
      361 cagcaagcgt gtccccgaag gaaaccttga acctaaccag tgagctgttg cagaaatgca
      421 gtagtcctgc ccctggccca ggaaaagaat gggaagagta tgtgcagatc cggtctctag
      481 ttgagaaaat acgaaaaaaa caaaaaggtc tgtctgttac ttttgatgga aaaagagaag
      541 attactttcc tgatctaatg aaatgggcct ctgaaaatgg agcctctgtt gagggttttg
      601 aaatggtgaa cttcaaagaa gagggcttcg gtttgagagc gacaagagat atcaaggcag
      661 aagaattatt tttatgggtt ccacgaaaat tactaatgac tgttgaatct gctaaaaatt
      721 cagtgctggg gcccttgtat tctcaagacc gaattcttca agccatggga aacatcacac
      781 tggcctttca tctgctgtgt gagcgagccg accctaactc tttctggcag ccctacattc
      841 agaccctccc cagcgaatac gacacccctc tctacttcga agaggatgag gttcgctacc
      901 ttcagtccac acaggccata catgacgtct tcagccagta taagaacaca gcgcggcagt
      961 atgcctactt ctataaggtc atccagaccc atcctcatgc ccacaaactg cccttgaagg
     1021 attctttcac ttatgaggac tacaggtggg cggtctcttc cgttatgact cgacaaaacc
     1081 agattcccac ggaggatggt tcccgggtga ccctggcgct gattcctctg tgggacatgt
     1141 gcaatcacac caacggcctg atcaccaccg gctacaacct ggaggacgac cgctgtgagt
     1201 gtgtagccct gcaggacttc cgggccggag agcagattta cattttttat ggcactcggt
     1261 caaatgcaga gtttgtgatc cacagtggtt ttttctttga caataattca cacgacagag
     1321 tgaaaataaa gcttggagtg agtaaaagtg acaggctgta cgccatgaag gccgaggtcc
     1381 tggctcgcgc tggcatccca acctccagtg tctttgcatt gcattttacg gagccaccca
     1441 tctctgccca acttctggct tttctccgag tcttctgcat gaccgaagaa gaattgaaag
     1501 aacatttgct gggagataat gccattgaca gaatcttcac cttggggaac tctgagtatc
     1561 ctgttagctg ggacaatgag gtcaaactgt ggacatttct tgaagatcga gcctcacttc
     1621 ttttaaaaac atataaaaca accattgagg aagataaatc cttcttgaaa aaccatgccc
     1681 tttccgttcg tgccacgatg gccatcaagt tgcgcttagg tgagaaagag atcttggaaa
     1741 aagcggtcaa gagcgcggcc gcgaaccgag agcactgccg caggcaggtg gaggggcacg
     1801 ccccgctccc caagtacgag gagagtaacc cggggctgct agagggcgtg gcggactcgc
     1861 ggctgcccct ggtcctcagg gacccggacg gggaggccgg cgcacaggag gccttgaccc
     1921 tcactgaggc tgtccgcagg gcaaaggctg cagagcacgg gctggtcaac ggcgaaaact
     1981 ctatacccaa cgggaccagt tcggaaaagg aaagtttaaa tcaagaggaa agtaaaagag
     2041 cgaccggaga cgccaaagaa tcttcttccg acagcgccga ggaagttgga aagtagctct
     2101 gagtctgtcg ggggacccag tttagcagaa gtgtatgaac ggccccgttt acatcgctgt
     2161 gtttccttgt tcacggtttt ctttctgcag agaggaaaat atgtttttgc tgctttatat
     2221 aaaaatgatt tttttaagtt atttaaaaaa tctagcttcc ctttctgatt aagattgcca
     2281 tcttgcttct tggccaaaca aacaagttat tgagcagagc acagaggggg aagaggtgcc
     2341 tcggaagact ttgcagaccc attgcgggca aatgtatctt cttcccgggg aagaattcag
     2401 ttcctctgtc agctgtgctt ttgtgggcct gtcatcttga caaccagaat caaagcctgc
     2461 cctgcctcct gccagcgggg cttgacggtg gcgctctggg ggtgcagtgc gaaggtgggg
     2521 catttggctg cgcagtggaa aacaggcttg aggttaggaa acttgagagg ctgggcaaaa
     2581 aaaaaaaaaa aaaaaaaaaa ttttcctaaa aaaaaataac accccagtac caaaagaaaa
     2641 ggtaaggtgg caaccttatt tttaatagtt ttaaatgttg atgataatcc taattatata
     2701 aacacacaga cacacacaga cacacacaca gacacacaga cacacacaga cacacacacc
     2761 tagtgatttc taaagatttg tttacttttt gtgttttgtt ttactgtatt gagaacttgt
     2821 cctttctcct tgaatccaag taggacatgc atcctcctaa ttttaaatgt tggctctgat
     2881 tgtaaagtgg tgcatttgcc ctccagccct ggtgccgggg agcttgcgag ggcaccatgt
     2941 tcaaggcaag gctgctcctg gcttctctgg ttgtcacaac aagctagaga ttttcaaagc
     3001 tacacttttg agtaaaaagc cttattaaaa ggaaaacgta attaa
//
LOCUS       XM_032617926            2806 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X2, mRNA.
ACCESSION   XM_032617926
VERSION     XM_032617926.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2806
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2806
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 20 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746410"
     CDS             55..1857
                     /gene="SETD3"
                     /codon_start=1
                     /product="actin-histidine N-methyltransferase isoform X2"
                     /protein_id="XP_032473817.1"
                     /db_xref="GeneID:116746410"
                     /translation="MGTSQKMGKKSRVKTQKSGTGATASVSPKETLNLTSELLQKCSS
                     PAPGPGKEWEEYVQIRSLVEKIRKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGF
                     EMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGN
                     ITLAFHLLCERADPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKN
                     TARQYAYFYKVIQTHPHAHKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLAL
                     IPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFF
                     FDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLR
                     VFCMTEEELKEHLLGDNAIDRIFTLGNSEYPVSWDNEVKLWTFLEDRASLLLKTYKTT
                     IEEDKSFLKNHALSVRATMAIKLRLGEKEILEKAVKSAAANREHCRRQVEGHAPLPKY
                     EESNPGLLEGVADSRLPLVLRDPDGEAGAQEALTLTEAVRRAKAAEHGLVNGENSIPN
                     GTSSEKESLNQEESKRATGDAKESSSDSAEEVGK"
     misc_feature    310..1059
                     /gene="SETD3"
                     /note="SET domain found in SET domain-containing protein 3
                     (SETD3) and similar proteins; Region: SET_SETD3; cd19176"
                     /db_xref="CDD:380953"
     misc_feature    order(382..384,388..390,610..612,829..834,895..909,
                     1009..1011,1045..1047,1051..1053,1057..1059)
                     /gene="SETD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380953"
     misc_feature    order(385..390,439..441,823..840,895..909,928..930,
                     1003..1014)
                     /gene="SETD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380953"
     misc_feature    1102..1497
                     /gene="SETD3"
                     /note="Rubisco LSMT substrate-binding; Region:
                     Rubis-subs-bind; pfam09273"
                     /db_xref="CDD:462737"
ORIGIN      
        1 cagtacgctg gagtctgctc gcagtaaata tttagcagat aatcattgaa ttcaatggga
       61 accagtcaga aaatgggtaa gaagagtcga gtaaaaacgc agaaatcagg cactggtgct
      121 acagcaagcg tgtccccgaa ggaaaccttg aacctaacca gtgagctgtt gcagaaatgc
      181 agtagtcctg cccctggccc aggaaaagaa tgggaagagt atgtgcagat ccggtctcta
      241 gttgagaaaa tacgaaaaaa acaaaaaggt ctgtctgtta cttttgatgg aaaaagagaa
      301 gattactttc ctgatctaat gaaatgggcc tctgaaaatg gagcctctgt tgagggtttt
      361 gaaatggtga acttcaaaga agagggcttc ggtttgagag cgacaagaga tatcaaggca
      421 gaagaattat ttttatgggt tccacgaaaa ttactaatga ctgttgaatc tgctaaaaat
      481 tcagtgctgg ggcccttgta ttctcaagac cgaattcttc aagccatggg aaacatcaca
      541 ctggcctttc atctgctgtg tgagcgagcc gaccctaact ctttctggca gccctacatt
      601 cagaccctcc ccagcgaata cgacacccct ctctacttcg aagaggatga ggttcgctac
      661 cttcagtcca cacaggccat acatgacgtc ttcagccagt ataagaacac agcgcggcag
      721 tatgcctact tctataaggt catccagacc catcctcatg cccacaaact gcccttgaag
      781 gattctttca cttatgagga ctacaggtgg gcggtctctt ccgttatgac tcgacaaaac
      841 cagattccca cggaggatgg ttcccgggtg accctggcgc tgattcctct gtgggacatg
      901 tgcaatcaca ccaacggcct gatcaccacc ggctacaacc tggaggacga ccgctgtgag
      961 tgtgtagccc tgcaggactt ccgggccgga gagcagattt acatttttta tggcactcgg
     1021 tcaaatgcag agtttgtgat ccacagtggt tttttctttg acaataattc acacgacaga
     1081 gtgaaaataa agcttggagt gagtaaaagt gacaggctgt acgccatgaa ggccgaggtc
     1141 ctggctcgcg ctggcatccc aacctccagt gtctttgcat tgcattttac ggagccaccc
     1201 atctctgccc aacttctggc ttttctccga gtcttctgca tgaccgaaga agaattgaaa
     1261 gaacatttgc tgggagataa tgccattgac agaatcttca ccttggggaa ctctgagtat
     1321 cctgttagct gggacaatga ggtcaaactg tggacatttc ttgaagatcg agcctcactt
     1381 cttttaaaaa catataaaac aaccattgag gaagataaat ccttcttgaa aaaccatgcc
     1441 ctttccgttc gtgccacgat ggccatcaag ttgcgcttag gtgagaaaga gatcttggaa
     1501 aaagcggtca agagcgcggc cgcgaaccga gagcactgcc gcaggcaggt ggaggggcac
     1561 gccccgctcc ccaagtacga ggagagtaac ccggggctgc tagagggcgt ggcggactcg
     1621 cggctgcccc tggtcctcag ggacccggac ggggaggccg gcgcacagga ggccttgacc
     1681 ctcactgagg ctgtccgcag ggcaaaggct gcagagcacg ggctggtcaa cggcgaaaac
     1741 tctataccca acgggaccag ttcggaaaag gaaagtttaa atcaagagga aagtaaaaga
     1801 gcgaccggag acgccaaaga atcttcttcc gacagcgccg aggaagttgg aaagtagctc
     1861 tgagtctgtc gggggaccca gtttagcaga agtgtatgaa cggccccgtt tacatcgctg
     1921 tgtttccttg ttcacggttt tctttctgca gagaggaaaa tatgtttttg ctgctttata
     1981 taaaaatgat ttttttaagt tatttaaaaa atctagcttc cctttctgat taagattgcc
     2041 atcttgcttc ttggccaaac aaacaagtta ttgagcagag cacagagggg gaagaggtgc
     2101 ctcggaagac tttgcagacc cattgcgggc aaatgtatct tcttcccggg gaagaattca
     2161 gttcctctgt cagctgtgct tttgtgggcc tgtcatcttg acaaccagaa tcaaagcctg
     2221 ccctgcctcc tgccagcggg gcttgacggt ggcgctctgg gggtgcagtg cgaaggtggg
     2281 gcatttggct gcgcagtgga aaacaggctt gaggttagga aacttgagag gctgggcaaa
     2341 aaaaaaaaaa aaaaaaaaaa attttcctaa aaaaaaataa caccccagta ccaaaagaaa
     2401 aggtaaggtg gcaaccttat ttttaatagt tttaaatgtt gatgataatc ctaattatat
     2461 aaacacacag acacacacag acacacacac agacacacag acacacacag acacacacac
     2521 ctagtgattt ctaaagattt gtttactttt tgtgttttgt tttactgtat tgagaacttg
     2581 tcctttctcc ttgaatccaa gtaggacatg catcctccta attttaaatg ttggctctga
     2641 ttgtaaagtg gtgcatttgc cctccagccc tggtgccggg gagcttgcga gggcaccatg
     2701 ttcaaggcaa ggctgctcct ggcttctctg gttgtcacaa caagctagag attttcaaag
     2761 ctacactttt gagtaaaaag ccttattaaa aggaaaacgt aattaa
//
LOCUS       XM_032617937            4549 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X3, mRNA.
ACCESSION   XM_032617937
VERSION     XM_032617937.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4549
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4549
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746410"
     CDS             1801..3600
                     /gene="SETD3"
                     /codon_start=1
                     /product="actin-histidine N-methyltransferase isoform X3"
                     /protein_id="XP_032473828.1"
                     /db_xref="GeneID:116746410"
                     /translation="MAPLSQKMGKKSRVKTQKSGTGATASVSPKETLNLTSELLQKCS
                     SPAPGPGKEWEEYVQIRSLVEKIRKKQKGLSVTFDGKREDYFPDLMKWASENGASVEG
                     FEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMG
                     NITLAFHLLCERADPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYK
                     NTARQYAYFYKVIQTHPHAHKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLA
                     LIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGF
                     FFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTVFALHFTEPPISAQLLAFLRV
                     FCMTEEELKEHLLGDNAIDRIFTLGNSEYPVSWDNEVKLWTFLEDRASLLLKTYKTTI
                     EEDKSFLKNHALSVRATMAIKLRLGEKEILEKAVKSAAANREHCRRQVEGHAPLPKYE
                     ESNPGLLEGVADSRLPLVLRDPDGEAGAQEALTLTEAVRRAKAAEHGLVNGENSIPNG
                     TSSEKESLNQEESKRATGDAKESSSDSAEEVGK"
     misc_feature    2059..2808
                     /gene="SETD3"
                     /note="SET domain found in SET domain-containing protein 3
                     (SETD3) and similar proteins; Region: SET_SETD3; cd19176"
                     /db_xref="CDD:380953"
     misc_feature    order(2131..2133,2137..2139,2359..2361,2578..2583,
                     2644..2658,2758..2760,2794..2796,2800..2802,2806..2808)
                     /gene="SETD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380953"
     misc_feature    order(2134..2139,2188..2190,2572..2589,2644..2658,
                     2677..2679,2752..2763)
                     /gene="SETD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380953"
     misc_feature    2851..3240
                     /gene="SETD3"
                     /note="Rubisco LSMT substrate-binding; Region:
                     Rubis-subs-bind; pfam09273"
                     /db_xref="CDD:462737"
ORIGIN      
        1 atgtttttga gttgtttgac gcctaacaca cagaaggtca cgctggcagg gagaggccgg
       61 caagcccatc tctgacagcg ggcttcacag ttcttcctgc caagctatat ttggaagtgt
      121 gattaaagcc ctactttcca ggcttactgg tagtcttagt tgttttcagg tcaagttcag
      181 tggtcctccg cagagatgcc gttggtagat gtggagaggg cctggtgcaa agaagacggc
      241 aggtgctctg tccagggctg tcagccgtga gctagtaaac ccgggagctt ccttctcgtt
      301 tagtccttga gcttaaggaa aggtgcttaa accattcccc cgcctgctcc tcccacccca
      361 cacttttttt tttccttctg cgtttgatct caaaataact aattctcttt gctgccgaag
      421 ttttaggtat tgttatctgt tcacttttgt tccagggtgc ctggcactat gtgttccact
      481 cttgtgtttt agaaggcttt ttagatacgt aagttacaaa gtatacttca tgcatcaggc
      541 gcaccagaga agctacatga gatagccctt taatagaatg ctattttctg ttgttgtagc
      601 atggcccgta tttgcgtgga gtcatggcag tggaatcagt gatcagctag gctgccggag
      661 aatatgcatt ttcaaccttt tgtcccatca cagctctcca cactacaata gtcatttctc
      721 tttgtaaaaa acaagtaggt cagagttcgc cttttggttc tcccttgaga ttaattgtag
      781 cttgttggcg aggggtccat ggagcatcat cgtggtgtgt ggtattcatt agtgtgtggg
      841 tggctccagt ggcttctctg gggggatcgc tctccgtctt cttgggttgt catcctcaag
      901 cgcttctgtc ttaggaggaa tgctcagatc aaagtcctta ggcaacagtt gcagccctcc
      961 tgcagctggg gtcctctttc ccaccgctcc ccacagagac ctctccacct ggggtgctgt
     1021 gccccctgcc ctgccatgtg cttccctcat tcctgccctg cctttgagtt gcccaccctt
     1081 tcttcataca tcccagtccc tttctttctt caagacacat ctcctgactc actgctataa
     1141 aatgttttca gacagatgtt ataaacatct ctgcccggcg tctattggtg catcccctgt
     1201 cccactgtct cgtctgcttg tggcatatcc tggccatttc ttatttgtta gaccattgag
     1261 ggctccaggg tggttgaagt gccagactgg gaggcagtgg agacctcttt cgtgggtagg
     1321 gtctgccatc gacttcctgt gaaaccctgg gcaaggtact ttggattttc cttgaaacaa
     1381 gattaaggaa ctgaattagc tctctgaagt ttctttgatc tctaaaatgt cttcagcatg
     1441 tgtctagacg gtctaatctg ttgcttatga tatagttact ctttatggga aattattctt
     1501 tttaagcaga gggaggagag aatatatagg tttttgtggc catgtgatag tttgtgtgat
     1561 acatgaatgt agatgtaact tctatctatg tagtatcaca gaatactagg atatacaatg
     1621 aagtctatgt aatttgaaaa aattctagag taaaagttgc ttctactgta gtttttgtag
     1681 gtgaaaagga acgaactttt cttccagaga ctacaaagca gctttttttt ttcacatttg
     1741 agtgcctcca aatactagta ttagttacac gttgcttttt ctggagggaa acttcaggat
     1801 atggcacctt tgagtcagaa aatgggtaag aagagtcgag taaaaacgca gaaatcaggc
     1861 actggtgcta cagcaagcgt gtccccgaag gaaaccttga acctaaccag tgagctgttg
     1921 cagaaatgca gtagtcctgc ccctggccca ggaaaagaat gggaagagta tgtgcagatc
     1981 cggtctctag ttgagaaaat acgaaaaaaa caaaaaggtc tgtctgttac ttttgatgga
     2041 aaaagagaag attactttcc tgatctaatg aaatgggcct ctgaaaatgg agcctctgtt
     2101 gagggttttg aaatggtgaa cttcaaagaa gagggcttcg gtttgagagc gacaagagat
     2161 atcaaggcag aagaattatt tttatgggtt ccacgaaaat tactaatgac tgttgaatct
     2221 gctaaaaatt cagtgctggg gcccttgtat tctcaagacc gaattcttca agccatggga
     2281 aacatcacac tggcctttca tctgctgtgt gagcgagccg accctaactc tttctggcag
     2341 ccctacattc agaccctccc cagcgaatac gacacccctc tctacttcga agaggatgag
     2401 gttcgctacc ttcagtccac acaggccata catgacgtct tcagccagta taagaacaca
     2461 gcgcggcagt atgcctactt ctataaggtc atccagaccc atcctcatgc ccacaaactg
     2521 cccttgaagg attctttcac ttatgaggac tacaggtggg cggtctcttc cgttatgact
     2581 cgacaaaacc agattcccac ggaggatggt tcccgggtga ccctggcgct gattcctctg
     2641 tgggacatgt gcaatcacac caacggcctg atcaccaccg gctacaacct ggaggacgac
     2701 cgctgtgagt gtgtagccct gcaggacttc cgggccggag agcagattta cattttttat
     2761 ggcactcggt caaatgcaga gtttgtgatc cacagtggtt ttttctttga caataattca
     2821 cacgacagag tgaaaataaa gcttggagtg agtaaaagtg acaggctgta cgccatgaag
     2881 gccgaggtcc tggctcgcgc tggcatccca actgtctttg cattgcattt tacggagcca
     2941 cccatctctg cccaacttct ggcttttctc cgagtcttct gcatgaccga agaagaattg
     3001 aaagaacatt tgctgggaga taatgccatt gacagaatct tcaccttggg gaactctgag
     3061 tatcctgtta gctgggacaa tgaggtcaaa ctgtggacat ttcttgaaga tcgagcctca
     3121 cttcttttaa aaacatataa aacaaccatt gaggaagata aatccttctt gaaaaaccat
     3181 gccctttccg ttcgtgccac gatggccatc aagttgcgct taggtgagaa agagatcttg
     3241 gaaaaagcgg tcaagagcgc ggccgcgaac cgagagcact gccgcaggca ggtggagggg
     3301 cacgccccgc tccccaagta cgaggagagt aacccggggc tgctagaggg cgtggcggac
     3361 tcgcggctgc ccctggtcct cagggacccg gacggggagg ccggcgcaca ggaggccttg
     3421 accctcactg aggctgtccg cagggcaaag gctgcagagc acgggctggt caacggcgaa
     3481 aactctatac ccaacgggac cagttcggaa aaggaaagtt taaatcaaga ggaaagtaaa
     3541 agagcgaccg gagacgccaa agaatcttct tccgacagcg ccgaggaagt tggaaagtag
     3601 ctctgagtct gtcgggggac ccagtttagc agaagtgtat gaacggcccc gtttacatcg
     3661 ctgtgtttcc ttgttcacgg ttttctttct gcagagagga aaatatgttt ttgctgcttt
     3721 atataaaaat gattttttta agttatttaa aaaatctagc ttccctttct gattaagatt
     3781 gccatcttgc ttcttggcca aacaaacaag ttattgagca gagcacagag ggggaagagg
     3841 tgcctcggaa gactttgcag acccattgcg ggcaaatgta tcttcttccc ggggaagaat
     3901 tcagttcctc tgtcagctgt gcttttgtgg gcctgtcatc ttgacaacca gaatcaaagc
     3961 ctgccctgcc tcctgccagc ggggcttgac ggtggcgctc tgggggtgca gtgcgaaggt
     4021 ggggcatttg gctgcgcagt ggaaaacagg cttgaggtta ggaaacttga gaggctgggc
     4081 aaaaaaaaaa aaaaaaaaaa aaaattttcc taaaaaaaaa taacacccca gtaccaaaag
     4141 aaaaggtaag gtggcaacct tatttttaat agttttaaat gttgatgata atcctaatta
     4201 tataaacaca cagacacaca cagacacaca cacagacaca cagacacaca cagacacaca
     4261 cacctagtga tttctaaaga tttgtttact ttttgtgttt tgttttactg tattgagaac
     4321 ttgtcctttc tccttgaatc caagtaggac atgcatcctc ctaattttaa atgttggctc
     4381 tgattgtaaa gtggtgcatt tgccctccag ccctggtgcc ggggagcttg cgagggcacc
     4441 atgttcaagg caaggctgct cctggcttct ctggttgtca caacaagcta gagattttca
     4501 aagctacact tttgagtaaa aagccttatt aaaaggaaaa cgtaattaa
//
LOCUS       XM_032617947            2455 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X4, mRNA.
ACCESSION   XM_032617947
VERSION     XM_032617947.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2455
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746410"
     CDS             132..1916
                     /gene="SETD3"
                     /codon_start=1
                     /product="actin-histidine N-methyltransferase isoform X4"
                     /protein_id="XP_032473838.1"
                     /db_xref="GeneID:116746410"
                     /translation="MGKKSRVKTQKSGTGATASVSPKETLNLTSELLQKCSSPAPGPG
                     KEWEEYVQIRSLVEKIRKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFK
                     EEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNITLAFH
                     LLCERADPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYA
                     YFYKVIQTHPHAHKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDM
                     CNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSH
                     DRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTE
                     EELKEHLLGDNAIDRIFTLGNSEYPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKS
                     FLKNHALSVRATMAIKLRLGEKEILEKAVKSAAANREHCRRQVEGHAPLPKYEESNPG
                     LLEGVADSRLPLVLRDPDGEAGAQEALTLTEAVRRAKAAEHGLVNGENSIPNGTSSEK
                     ESLNQEESKRATGDAKESSSDSAEEVGK"
     misc_feature    369..1118
                     /gene="SETD3"
                     /note="SET domain found in SET domain-containing protein 3
                     (SETD3) and similar proteins; Region: SET_SETD3; cd19176"
                     /db_xref="CDD:380953"
     misc_feature    order(441..443,447..449,669..671,888..893,954..968,
                     1068..1070,1104..1106,1110..1112,1116..1118)
                     /gene="SETD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380953"
     misc_feature    order(444..449,498..500,882..899,954..968,987..989,
                     1062..1073)
                     /gene="SETD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380953"
     misc_feature    1161..1556
                     /gene="SETD3"
                     /note="Rubisco LSMT substrate-binding; Region:
                     Rubis-subs-bind; pfam09273"
                     /db_xref="CDD:462737"
ORIGIN      
        1 cggtcccgcc ccctcctgtc cggccgcagc cgccgccgcc accgcctggg gcttggttga
       61 ggtggactgt gggtcccggc ggagtgtggc gccgccgccg ctgcgcgaag gggcaagcgg
      121 gcagtcagaa aatgggtaag aagagtcgag taaaaacgca gaaatcaggc actggtgcta
      181 cagcaagcgt gtccccgaag gaaaccttga acctaaccag tgagctgttg cagaaatgca
      241 gtagtcctgc ccctggccca ggaaaagaat gggaagagta tgtgcagatc cggtctctag
      301 ttgagaaaat acgaaaaaaa caaaaaggtc tgtctgttac ttttgatgga aaaagagaag
      361 attactttcc tgatctaatg aaatgggcct ctgaaaatgg agcctctgtt gagggttttg
      421 aaatggtgaa cttcaaagaa gagggcttcg gtttgagagc gacaagagat atcaaggcag
      481 aagaattatt tttatgggtt ccacgaaaat tactaatgac tgttgaatct gctaaaaatt
      541 cagtgctggg gcccttgtat tctcaagacc gaattcttca agccatggga aacatcacac
      601 tggcctttca tctgctgtgt gagcgagccg accctaactc tttctggcag ccctacattc
      661 agaccctccc cagcgaatac gacacccctc tctacttcga agaggatgag gttcgctacc
      721 ttcagtccac acaggccata catgacgtct tcagccagta taagaacaca gcgcggcagt
      781 atgcctactt ctataaggtc atccagaccc atcctcatgc ccacaaactg cccttgaagg
      841 attctttcac ttatgaggac tacaggtggg cggtctcttc cgttatgact cgacaaaacc
      901 agattcccac ggaggatggt tcccgggtga ccctggcgct gattcctctg tgggacatgt
      961 gcaatcacac caacggcctg atcaccaccg gctacaacct ggaggacgac cgctgtgagt
     1021 gtgtagccct gcaggacttc cgggccggag agcagattta cattttttat ggcactcggt
     1081 caaatgcaga gtttgtgatc cacagtggtt ttttctttga caataattca cacgacagag
     1141 tgaaaataaa gcttggagtg agtaaaagtg acaggctgta cgccatgaag gccgaggtcc
     1201 tggctcgcgc tggcatccca acctccagtg tctttgcatt gcattttacg gagccaccca
     1261 tctctgccca acttctggct tttctccgag tcttctgcat gaccgaagaa gaattgaaag
     1321 aacatttgct gggagataat gccattgaca gaatcttcac cttggggaac tctgagtatc
     1381 ctgttagctg ggacaatgag gtcaaactgt ggacatttct tgaagatcga gcctcacttc
     1441 ttttaaaaac atataaaaca accattgagg aagataaatc cttcttgaaa aaccatgccc
     1501 tttccgttcg tgccacgatg gccatcaagt tgcgcttagg tgagaaagag atcttggaaa
     1561 aagcggtcaa gagcgcggcc gcgaaccgag agcactgccg caggcaggtg gaggggcacg
     1621 ccccgctccc caagtacgag gagagtaacc cggggctgct agagggcgtg gcggactcgc
     1681 ggctgcccct ggtcctcagg gacccggacg gggaggccgg cgcacaggag gccttgaccc
     1741 tcactgaggc tgtccgcagg gcaaaggctg cagagcacgg gctggtcaac ggcgaaaact
     1801 ctatacccaa cgggaccagt tcggaaaagg aaagtttaaa tcaagaggaa agtaaaagag
     1861 cgaccggaga cgccaaagaa tcttcttccg acagcgccga ggaagttgga aagtagctct
     1921 gagtctgtcg ggggacccag tttagcagaa gtgtatgaac ggccccgttt acatcgctgt
     1981 gtttccttgt tcacggtttt ctttctgcag agaggaaaat atgtttttgc tgctttatat
     2041 aaaaatgatt tttttaagtt atttaaaaaa tctagcttcc ctttctgatt aagattgcca
     2101 tcttgcttct tggccaaaca aacaagttat tgagcagagc acagaggggg aagaggtgcc
     2161 tcggaagact ttgcagaccc attgcgggca aatgtatctt cttcccgggg aagaattcag
     2221 ttcctctgtc agctgtgctt ttgtgggcct gtcatcttga caaccagaat caaagcctgc
     2281 cctgcctcct gccagcgggg cttgacggtg gcgctctggg ggtgcagtgc gaaggtgggg
     2341 catttggctg cgcagtggaa aacaggcttg aggttaggaa acttgagagg ctgggcaaaa
     2401 aaaaaaaaaa aaaaaaaaaa ttttcctaaa aaaaaataac accccagtac caaaa
//
LOCUS       XM_032617957            4338 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X5, mRNA.
ACCESSION   XM_032617957
VERSION     XM_032617957.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4338
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4338
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746410"
     CDS             1804..3312
                     /gene="SETD3"
                     /codon_start=1
                     /product="actin-histidine N-methyltransferase isoform X5"
                     /protein_id="XP_032473848.1"
                     /db_xref="GeneID:116746410"
                     /translation="MAPLSQKMGKKSRVKTQKSGTGATASVSPKETLNLTSELLQKCS
                     SPAPGPGKEWEEYVQIRSLVEKIRKKQKGLSVTFDGKREDYFPDLMKWASENGASVEG
                     FEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMG
                     NITLAFHLLCERADPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYK
                     NTARQYAYFYKVIQTHPHAHKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLA
                     LIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGF
                     FFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFL
                     RVFCMTEEELKEHLLGDNAIDRIFTLGNSEYPVSWDNEVKLWTFLEDRASLLLKTYKT
                     TIEEDKSFLKNHALSVRATMAIKLRLGQRLQSTGWSTAKTLYPTGPVRKRKV"
     misc_feature    2062..2811
                     /gene="SETD3"
                     /note="SET domain found in SET domain-containing protein 3
                     (SETD3) and similar proteins; Region: SET_SETD3; cd19176"
                     /db_xref="CDD:380953"
     misc_feature    order(2134..2136,2140..2142,2362..2364,2581..2586,
                     2647..2661,2761..2763,2797..2799,2803..2805,2809..2811)
                     /gene="SETD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380953"
     misc_feature    order(2137..2142,2191..2193,2575..2592,2647..2661,
                     2680..2682,2755..2766)
                     /gene="SETD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380953"
     misc_feature    2854..3240
                     /gene="SETD3"
                     /note="Rubisco LSMT substrate-binding; Region:
                     Rubis-subs-bind; pfam09273"
                     /db_xref="CDD:462737"
ORIGIN      
        1 gtgatgtttt tgagttgttt gacgcctaac acacagaagg tcacgctggc agggagaggc
       61 cggcaagccc atctctgaca gcgggcttca cagttcttcc tgccaagcta tatttggaag
      121 tgtgattaaa gccctacttt ccaggcttac tggtagtctt agttgttttc aggtcaagtt
      181 cagtggtcct ccgcagagat gccgttggta gatgtggaga gggcctggtg caaagaagac
      241 ggcaggtgct ctgtccaggg ctgtcagccg tgagctagta aacccgggag cttccttctc
      301 gtttagtcct tgagcttaag gaaaggtgct taaaccattc ccccgcctgc tcctcccacc
      361 ccacactttt ttttttcctt ctgcgtttga tctcaaaata actaattctc tttgctgccg
      421 aagttttagg tattgttatc tgttcacttt tgttccaggg tgcctggcac tatgtgttcc
      481 actcttgtgt tttagaaggc tttttagata cgtaagttac aaagtatact tcatgcatca
      541 ggcgcaccag agaagctaca tgagatagcc ctttaataga atgctatttt ctgttgttgt
      601 agcatggccc gtatttgcgt ggagtcatgg cagtggaatc agtgatcagc taggctgccg
      661 gagaatatgc attttcaacc ttttgtccca tcacagctct ccacactaca atagtcattt
      721 ctctttgtaa aaaacaagta ggtcagagtt cgccttttgg ttctcccttg agattaattg
      781 tagcttgttg gcgaggggtc catggagcat catcgtggtg tgtggtattc attagtgtgt
      841 gggtggctcc agtggcttct ctggggggat cgctctccgt cttcttgggt tgtcatcctc
      901 aagcgcttct gtcttaggag gaatgctcag atcaaagtcc ttaggcaaca gttgcagccc
      961 tcctgcagct ggggtcctct ttcccaccgc tccccacaga gacctctcca cctggggtgc
     1021 tgtgccccct gccctgccat gtgcttccct cattcctgcc ctgcctttga gttgcccacc
     1081 ctttcttcat acatcccagt ccctttcttt cttcaagaca catctcctga ctcactgcta
     1141 taaaatgttt tcagacagat gttataaaca tctctgcccg gcgtctattg gtgcatcccc
     1201 tgtcccactg tctcgtctgc ttgtggcata tcctggccat ttcttatttg ttagaccatt
     1261 gagggctcca gggtggttga agtgccagac tgggaggcag tggagacctc tttcgtgggt
     1321 agggtctgcc atcgacttcc tgtgaaaccc tgggcaaggt actttggatt ttccttgaaa
     1381 caagattaag gaactgaatt agctctctga agtttctttg atctctaaaa tgtcttcagc
     1441 atgtgtctag acggtctaat ctgttgctta tgatatagtt actctttatg ggaaattatt
     1501 ctttttaagc agagggagga gagaatatat aggtttttgt ggccatgtga tagtttgtgt
     1561 gatacatgaa tgtagatgta acttctatct atgtagtatc acagaatact aggatataca
     1621 atgaagtcta tgtaatttga aaaaattcta gagtaaaagt tgcttctact gtagtttttg
     1681 taggtgaaaa ggaacgaact tttcttccag agactacaaa gcagcttttt tttttcacat
     1741 ttgagtgcct ccaaatacta gtattagtta cacgttgctt tttctggagg gaaacttcag
     1801 gatatggcac ctttgagtca gaaaatgggt aagaagagtc gagtaaaaac gcagaaatca
     1861 ggcactggtg ctacagcaag cgtgtccccg aaggaaacct tgaacctaac cagtgagctg
     1921 ttgcagaaat gcagtagtcc tgcccctggc ccaggaaaag aatgggaaga gtatgtgcag
     1981 atccggtctc tagttgagaa aatacgaaaa aaacaaaaag gtctgtctgt tacttttgat
     2041 ggaaaaagag aagattactt tcctgatcta atgaaatggg cctctgaaaa tggagcctct
     2101 gttgagggtt ttgaaatggt gaacttcaaa gaagagggct tcggtttgag agcgacaaga
     2161 gatatcaagg cagaagaatt atttttatgg gttccacgaa aattactaat gactgttgaa
     2221 tctgctaaaa attcagtgct ggggcccttg tattctcaag accgaattct tcaagccatg
     2281 ggaaacatca cactggcctt tcatctgctg tgtgagcgag ccgaccctaa ctctttctgg
     2341 cagccctaca ttcagaccct ccccagcgaa tacgacaccc ctctctactt cgaagaggat
     2401 gaggttcgct accttcagtc cacacaggcc atacatgacg tcttcagcca gtataagaac
     2461 acagcgcggc agtatgccta cttctataag gtcatccaga cccatcctca tgcccacaaa
     2521 ctgcccttga aggattcttt cacttatgag gactacaggt gggcggtctc ttccgttatg
     2581 actcgacaaa accagattcc cacggaggat ggttcccggg tgaccctggc gctgattcct
     2641 ctgtgggaca tgtgcaatca caccaacggc ctgatcacca ccggctacaa cctggaggac
     2701 gaccgctgtg agtgtgtagc cctgcaggac ttccgggccg gagagcagat ttacattttt
     2761 tatggcactc ggtcaaatgc agagtttgtg atccacagtg gttttttctt tgacaataat
     2821 tcacacgaca gagtgaaaat aaagcttgga gtgagtaaaa gtgacaggct gtacgccatg
     2881 aaggccgagg tcctggctcg cgctggcatc ccaacctcca gtgtctttgc attgcatttt
     2941 acggagccac ccatctctgc ccaacttctg gcttttctcc gagtcttctg catgaccgaa
     3001 gaagaattga aagaacattt gctgggagat aatgccattg acagaatctt caccttgggg
     3061 aactctgagt atcctgttag ctgggacaat gaggtcaaac tgtggacatt tcttgaagat
     3121 cgagcctcac ttcttttaaa aacatataaa acaaccattg aggaagataa atccttcttg
     3181 aaaaaccatg ccctttccgt tcgtgccacg atggccatca agttgcgctt agggcaaagg
     3241 ctgcagagca cgggctggtc aacggcgaaa actctatacc caacgggacc agttcggaaa
     3301 aggaaagttt aaatcaagag gaaagtaaaa gagcgaccgg agacgccaaa gaatcttctt
     3361 ccgacagcgc cgaggaagtt ggaaagtagc tctgagtctg tcgggggacc cagtttagca
     3421 gaagtgtatg aacggccccg tttacatcgc tgtgtttcct tgttcacggt tttctttctg
     3481 cagagaggaa aatatgtttt tgctgcttta tataaaaatg atttttttaa gttatttaaa
     3541 aaatctagct tccctttctg attaagattg ccatcttgct tcttggccaa acaaacaagt
     3601 tattgagcag agcacagagg gggaagaggt gcctcggaag actttgcaga cccattgcgg
     3661 gcaaatgtat cttcttcccg gggaagaatt cagttcctct gtcagctgtg cttttgtggg
     3721 cctgtcatct tgacaaccag aatcaaagcc tgccctgcct cctgccagcg gggcttgacg
     3781 gtggcgctct gggggtgcag tgcgaaggtg gggcatttgg ctgcgcagtg gaaaacaggc
     3841 ttgaggttag gaaacttgag aggctgggca aaaaaaaaaa aaaaaaaaaa aaattttcct
     3901 aaaaaaaaat aacaccccag taccaaaaga aaaggtaagg tggcaacctt atttttaata
     3961 gttttaaatg ttgatgataa tcctaattat ataaacacac agacacacac agacacacac
     4021 acagacacac agacacacac agacacacac acctagtgat ttctaaagat ttgtttactt
     4081 tttgtgtttt gttttactgt attgagaact tgtcctttct ccttgaatcc aagtaggaca
     4141 tgcatcctcc taattttaaa tgttggctct gattgtaaag tggtgcattt gccctccagc
     4201 cctggtgccg gggagcttgc gagggcacca tgttcaaggc aaggctgctc ctggcttctc
     4261 tggttgtcac aacaagctag agattttcaa agctacactt ttgagtaaaa agccttatta
     4321 aaaggaaaac gtaattaa
//
LOCUS       XM_032617965            3283 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X6, mRNA.
ACCESSION   XM_032617965
VERSION     XM_032617965.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3283
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3283
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746410"
     CDS             1805..3268
                     /gene="SETD3"
                     /codon_start=1
                     /product="actin-histidine N-methyltransferase isoform X6"
                     /protein_id="XP_032473856.1"
                     /db_xref="GeneID:116746410"
                     /translation="MAPLSQKMGKKSRVKTQKSGTGATASVSPKETLNLTSELLQKCS
                     SPAPGPGKEWEEYVQIRSLVEKIRKKQKGLSVTFDGKREDYFPDLMKWASENGASVEG
                     FEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMG
                     NITLAFHLLCERADPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYK
                     NTARQYAYFYKVIQTHPHAHKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLA
                     LIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGF
                     FFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFL
                     RVFCMTEEELKEHLLGDNAIDRIFTLGNSEYPVSWDNEVKLWTFLEDRASLLLKTYKT
                     TIEEDKSFLKNHALSVRATMAIKLRLVSGNREGARHG"
     misc_feature    2063..2812
                     /gene="SETD3"
                     /note="SET domain found in SET domain-containing protein 3
                     (SETD3) and similar proteins; Region: SET_SETD3; cd19176"
                     /db_xref="CDD:380953"
     misc_feature    order(2135..2137,2141..2143,2363..2365,2582..2587,
                     2648..2662,2762..2764,2798..2800,2804..2806,2810..2812)
                     /gene="SETD3"
                     /note="SAM binding site; other site"
                     /db_xref="CDD:380953"
     misc_feature    order(2138..2143,2192..2194,2576..2593,2648..2662,
                     2681..2683,2756..2767)
                     /gene="SETD3"
                     /note="putative active site [active]"
                     /db_xref="CDD:380953"
     misc_feature    2855..3232
                     /gene="SETD3"
                     /note="Rubisco LSMT substrate-binding; Region:
                     Rubis-subs-bind; pfam09273"
                     /db_xref="CDD:462737"
ORIGIN      
        1 agtgatgttt ttgagttgtt tgacgcctaa cacacagaag gtcacgctgg cagggagagg
       61 ccggcaagcc catctctgac agcgggcttc acagttcttc ctgccaagct atatttggaa
      121 gtgtgattaa agccctactt tccaggctta ctggtagtct tagttgtttt caggtcaagt
      181 tcagtggtcc tccgcagaga tgccgttggt agatgtggag agggcctggt gcaaagaaga
      241 cggcaggtgc tctgtccagg gctgtcagcc gtgagctagt aaacccggga gcttccttct
      301 cgtttagtcc ttgagcttaa ggaaaggtgc ttaaaccatt cccccgcctg ctcctcccac
      361 cccacacttt tttttttcct tctgcgtttg atctcaaaat aactaattct ctttgctgcc
      421 gaagttttag gtattgttat ctgttcactt ttgttccagg gtgcctggca ctatgtgttc
      481 cactcttgtg ttttagaagg ctttttagat acgtaagtta caaagtatac ttcatgcatc
      541 aggcgcacca gagaagctac atgagatagc cctttaatag aatgctattt tctgttgttg
      601 tagcatggcc cgtatttgcg tggagtcatg gcagtggaat cagtgatcag ctaggctgcc
      661 ggagaatatg cattttcaac cttttgtccc atcacagctc tccacactac aatagtcatt
      721 tctctttgta aaaaacaagt aggtcagagt tcgccttttg gttctccctt gagattaatt
      781 gtagcttgtt ggcgaggggt ccatggagca tcatcgtggt gtgtggtatt cattagtgtg
      841 tgggtggctc cagtggcttc tctgggggga tcgctctccg tcttcttggg ttgtcatcct
      901 caagcgcttc tgtcttagga ggaatgctca gatcaaagtc cttaggcaac agttgcagcc
      961 ctcctgcagc tggggtcctc tttcccaccg ctccccacag agacctctcc acctggggtg
     1021 ctgtgccccc tgccctgcca tgtgcttccc tcattcctgc cctgcctttg agttgcccac
     1081 cctttcttca tacatcccag tccctttctt tcttcaagac acatctcctg actcactgct
     1141 ataaaatgtt ttcagacaga tgttataaac atctctgccc ggcgtctatt ggtgcatccc
     1201 ctgtcccact gtctcgtctg cttgtggcat atcctggcca tttcttattt gttagaccat
     1261 tgagggctcc agggtggttg aagtgccaga ctgggaggca gtggagacct ctttcgtggg
     1321 tagggtctgc catcgacttc ctgtgaaacc ctgggcaagg tactttggat tttccttgaa
     1381 acaagattaa ggaactgaat tagctctctg aagtttcttt gatctctaaa atgtcttcag
     1441 catgtgtcta gacggtctaa tctgttgctt atgatatagt tactctttat gggaaattat
     1501 tctttttaag cagagggagg agagaatata taggtttttg tggccatgtg atagtttgtg
     1561 tgatacatga atgtagatgt aacttctatc tatgtagtat cacagaatac taggatatac
     1621 aatgaagtct atgtaatttg aaaaaattct agagtaaaag ttgcttctac tgtagttttt
     1681 gtaggtgaaa aggaacgaac ttttcttcca gagactacaa agcagctttt ttttttcaca
     1741 tttgagtgcc tccaaatact agtattagtt acacgttgct ttttctggag ggaaacttca
     1801 ggatatggca cctttgagtc agaaaatggg taagaagagt cgagtaaaaa cgcagaaatc
     1861 aggcactggt gctacagcaa gcgtgtcccc gaaggaaacc ttgaacctaa ccagtgagct
     1921 gttgcagaaa tgcagtagtc ctgcccctgg cccaggaaaa gaatgggaag agtatgtgca
     1981 gatccggtct ctagttgaga aaatacgaaa aaaacaaaaa ggtctgtctg ttacttttga
     2041 tggaaaaaga gaagattact ttcctgatct aatgaaatgg gcctctgaaa atggagcctc
     2101 tgttgagggt tttgaaatgg tgaacttcaa agaagagggc ttcggtttga gagcgacaag
     2161 agatatcaag gcagaagaat tatttttatg ggttccacga aaattactaa tgactgttga
     2221 atctgctaaa aattcagtgc tggggccctt gtattctcaa gaccgaattc ttcaagccat
     2281 gggaaacatc acactggcct ttcatctgct gtgtgagcga gccgacccta actctttctg
     2341 gcagccctac attcagaccc tccccagcga atacgacacc cctctctact tcgaagagga
     2401 tgaggttcgc taccttcagt ccacacaggc catacatgac gtcttcagcc agtataagaa
     2461 cacagcgcgg cagtatgcct acttctataa ggtcatccag acccatcctc atgcccacaa
     2521 actgcccttg aaggattctt tcacttatga ggactacagg tgggcggtct cttccgttat
     2581 gactcgacaa aaccagattc ccacggagga tggttcccgg gtgaccctgg cgctgattcc
     2641 tctgtgggac atgtgcaatc acaccaacgg cctgatcacc accggctaca acctggagga
     2701 cgaccgctgt gagtgtgtag ccctgcagga cttccgggcc ggagagcaga tttacatttt
     2761 ttatggcact cggtcaaatg cagagtttgt gatccacagt ggttttttct ttgacaataa
     2821 ttcacacgac agagtgaaaa taaagcttgg agtgagtaaa agtgacaggc tgtacgccat
     2881 gaaggccgag gtcctggctc gcgctggcat cccaacctcc agtgtctttg cattgcattt
     2941 tacggagcca cccatctctg cccaacttct ggcttttctc cgagtcttct gcatgaccga
     3001 agaagaattg aaagaacatt tgctgggaga taatgccatt gacagaatct tcaccttggg
     3061 gaactctgag tatcctgtta gctgggacaa tgaggtcaaa ctgtggacat ttcttgaaga
     3121 tcgagcctca cttcttttaa aaacatataa aacaaccatt gaggaagata aatccttctt
     3181 gaaaaaccat gccctttccg ttcgtgccac gatggccatc aagttgcgct tagtttcagg
     3241 caacagagaa ggtgctcggc atggctgagg gcagacttca ccc
//
LOCUS       XR_004347706            2925 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X7, misc_RNA.
ACCESSION   XR_004347706
VERSION     XR_004347706.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2925
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2925
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746410"
     misc_RNA        1..2925
                     /gene="SETD3"
                     /product="SET domain containing 3, actin histidine
                     methyltransferase, transcript variant X7"
                     /db_xref="GeneID:116746410"
ORIGIN      
        1 tatctgagtg atgtttttga gttgtttgac gcctaacaca cagaaggtca cgctggcagg
       61 gagaggccgg caagcccatc tctgacagcg ggcttcacag ttcttcctgc caagctatat
      121 ttggaagtgt gattaaagcc ctactttcca ggcttactgg tagtcttagt tgttttcagg
      181 tcaagttcag tggtcctccg cagagatgcc gttggtagat gtggagaggg cctggtgcaa
      241 agaagacggc aggtgctctg tccagggctg tcagccgtga gctagtaaac ccgggagctt
      301 ccttctcgtt tagtccttga gcttaaggaa aggtgcttaa accattcccc cgcctgctcc
      361 tcccacccca cacttttttt tttccttctg cgtttgatct caaaataact aattctcttt
      421 gctgccgaag ttttaggtat tgttatctgt tcacttttgt tccagggtgc ctggcactat
      481 gtgttccact cttgtgtttt agaaggcttt ttagatacgt aagttacaaa gtatacttca
      541 tgcatcaggc gcaccagaga agctacatga gatagccctt taatagaatg ctattttctg
      601 ttgttgtagc atggcccgta tttgcgtgga gtcatggcag tggaatcagt gatcagctag
      661 gctgccggag aatatgcatt ttcaaccttt tgtcccatca cagctctcca cactacaata
      721 gtcatttctc tttgtaaaaa acaagtaggt cagagttcgc cttttggttc tcccttgaga
      781 ttaattgtag cttgttggcg aggggtccat ggagcatcat cgtggtgtgt ggtattcatt
      841 agtgtgtggg tggctccagt ggcttctctg gggggatcgc tctccgtctt cttgggttgt
      901 catcctcaag cgcttctgtc ttaggaggaa tgctcagatc aaagtcctta ggcaacagtt
      961 gcagccctcc tgcagctggg gtcctctttc ccaccgctcc ccacagagac ctctccacct
     1021 ggggtgctgt gccccctgcc ctgccatgtg cttccctcat tcctgccctg cctttgagtt
     1081 gcccaccctt tcttcataca tcccagtccc tttctttctt caagacacat ctcctgactc
     1141 actgctataa aatgttttca gacagatgtt ataaacatct ctgcccggcg tctattggtg
     1201 catcccctgt cccactgtct cgtctgcttg tggcatatcc tggccatttc ttatttgtta
     1261 gaccattgag ggctccaggg tggttgaagt gccagactgg gaggcagtgg agacctcttt
     1321 cgtgggtagg gtctgccatc gacttcctgt gaaaccctgg gcaaggtact ttggattttc
     1381 cttgaaacaa gattaaggaa ctgaattagc tctctgaagt ttctttgatc tctaaaatgt
     1441 cttcagcatg tgtctagacg gtctaatctg ttgcttatga tatagttact ctttatggga
     1501 aattattctt tttaagcaga gggaggagag aatatatagg tttttgtggc catgtgatag
     1561 tttgtgtgat acatgaatgt agatgtaact tctatctatg tagtatcaca gaatactagg
     1621 atatacaatg aagtctatgt aatttgaaaa aattctagag taaaagttgc ttctactgta
     1681 gtttttgtag gtgaaaagga acgaactttt cttccagaga ctacaaagca gctttttttt
     1741 ttcacatttg agtgcctcca aatactagta ttagttacac gttgcttttt ctggagggaa
     1801 acttcaggat atggcacctt tgagtcagaa aatgggtaag aagagtcgag taaaaacgca
     1861 gaaatcaggc actggtgcta cagcaagcgt gtccccgaag gaaaccttga acctaaccag
     1921 tgagctgttg cagaaatgca gtagtcctgc ccctggccca ggaaaagaat gggaagagta
     1981 tgtgcagatc cggtctctag ttgagaaaat acgaaaaaaa caaaaaggtc tgtctgttac
     2041 ttttgatgga aaaagagaag attactttcc tgatctaatg aaatgggcct ctgaaaatgg
     2101 agcctctgtt gagggttttg aaatggtgaa cttcaaagaa gagggcttcg gtttgagagc
     2161 gacaagagat atcaaggcag aagaattatt tttatgggtt ccacgaaaat tactaatgac
     2221 tgttgaatct gctaaaaatt cagtgctggg gcccttgtat tctcaagacc gaattcttca
     2281 agccatggga aacatcacac tggcctttca tctgctgtgt gagcgagccg accctaactc
     2341 tttctggcag ccctacattc agaccctccc cagcgaatac gacacccctc tctacttcga
     2401 agaggatgag gttcgctacc ttcagtccac acaggccata catgacgtct tcagccagta
     2461 taagaacaca gcgcggcagt atgcctactt ctataaggtc atccagaccc atcctcatgc
     2521 ccacaaactg cccttgaagg attctttcac ttatgaggac tacaggtggg cggtctcttc
     2581 cgttatgact cgacaaaacc agattcccac ggaggatggt tcccgggtga ccctggcgct
     2641 gattcctctg tgggacatgt gcaatcacac caacggcctg atcaccaccg gctacaacct
     2701 ggaggacgac cgctgtgagt gtgtagccct gcaggacttc cgggccggag agcagagtga
     2761 aaataaagct tggagtgagt aaaagtgaca ggctgtacgc catgaaggcc gaggtcctgg
     2821 ctcgcgctgg catcccaacc tccagtgtct ttgcattgca ttttacggag ccacccatct
     2881 ctgcccaact tctggctttt ctccgagtct tctgcatgac cgaag
//
LOCUS       XR_004347707            2901 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X8, misc_RNA.
ACCESSION   XR_004347707
VERSION     XR_004347707.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2901
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2901
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746410"
     misc_RNA        1..2901
                     /gene="SETD3"
                     /product="SET domain containing 3, actin histidine
                     methyltransferase, transcript variant X8"
                     /db_xref="GeneID:116746410"
ORIGIN      
        1 ctatctgagt gatgtttttg agttgtttga cgcctaacac acagaaggtc acgctggcag
       61 ggagaggccg gcaagcccat ctctgacagc gggcttcaca gttcttcctg ccaagctata
      121 tttggaagtg tgattaaagc cctactttcc aggcttactg gtagtcttag ttgttttcag
      181 gtcaagttca gtggtcctcc gcagagatgc cgttggtaga tgtggagagg gcctggtgca
      241 aagaagacgg caggtgctct gtccagggct gtcagccgtg agctagtaaa cccgggagct
      301 tccttctcgt ttagtccttg agcttaagga aaggtgctta aaccattccc ccgcctgctc
      361 ctcccacccc acactttttt ttttccttct gcgtttgatc tcaaaataac taattctctt
      421 tgctgccgaa gttttaggta ttgttatctg ttcacttttg ttccagggtg cctggcacta
      481 tgtgttccac tcttgtgttt tagaaggctt tttagatacg taagttacaa agtatacttc
      541 atgcatcagg cgcaccagag aagctacatg agatagccct ttaatagaat gctattttct
      601 gttgttgtag catggcccgt atttgcgtgg agtcatggca gtggaatcag tgatcagcta
      661 ggctgccgga gaatatgcat tttcaacctt ttgtcccatc acagctctcc acactacaat
      721 agtcatttct ctttgtaaaa aacaagtagg tcagagttcg ccttttggtt ctcccttgag
      781 attaattgta gcttgttggc gaggggtcca tggagcatca tcgtggtgtg tggtattcat
      841 tagtgtgtgg gtggctccag tggcttctct ggggggatcg ctctccgtct tcttgggttg
      901 tcatcctcaa gcgcttctgt cttaggagga atgctcagat caaagtcctt aggcaacagt
      961 tgcagccctc ctgcagctgg ggtcctcttt cccaccgctc cccacagaga cctctccacc
     1021 tggggtgctg tgccccctgc cctgccatgt gcttccctca ttcctgccct gcctttgagt
     1081 tgcccaccct ttcttcatac atcccagtcc ctttctttct tcaagacaca tctcctgact
     1141 cactgctata aaatgttttc agacagatgt tataaacatc tctgcccggc gtctattggt
     1201 gcatcccctg tcccactgtc tcgtctgctt gtggcatatc ctggccattt cttatttgtt
     1261 agaccattga gggctccagg gtggttgaag tgccagactg ggaggcagtg gagacctctt
     1321 tcgtgggtag ggtctgccat cgacttcctg tgaaaccctg ggcaaggtac tttggatttt
     1381 ccttgaaaca agattaagga actgaattag ctctctgaag tttctttgat ctctaaaatg
     1441 tcttcagcat gtgtctagac ggtctaatct gttgcttatg atatagttac tctttatggg
     1501 aaattattct ttttaagcag agggaggaga gaatatatag gtttttgtgg ccatgtgata
     1561 gtttgtgtga tacatgaatg tagatgtaac ttctatctat gtagtatcac agaatactag
     1621 gatatacaat gaagtctatg taatttgaaa aaattctaga gtaaaagttg cttctactgt
     1681 agtttttgta ggtgaaaagg aacgaacttt tcttccagag actacaaagc agcttttttt
     1741 tttcacattt gagtgcctcc aaatactagt attagttaca cgttgctttt tctggaggga
     1801 aacttcagga tatggcacct ttgagtcaga aaatgggtaa gaagagtcga gtaaaaacgc
     1861 agaaatcagg cactggtgct acagcaagcg tgtccccgaa ggaaaccttg aacctaacca
     1921 gtgagctgtt gcagaaatgc agtagtcctg cccctggccc aggaaaagaa tgggaagagt
     1981 atgtgcagat ccggtctcta gttgagaaaa tacgaaaaaa acaaaaaggt ctgtctgtta
     2041 cttttgatgg aaaaagagaa gattactttc ctgatctaat gaaatgggcc tctgaaaatg
     2101 gagcctctgt tgagggtttt gaaatggtga acttcaaaga agagggcttc ggtttgagag
     2161 cgacaagaga tatcaaggca gaagaattat ttttatgggt tccacgaaaa ttactaatga
     2221 ctgttgaatc tgctaaaaat tcagtgctgg ggcccttgta ttctcaagac cgaattcttc
     2281 aagccatggg aaacatcaca ctggcctttc atctgctgtg tgagcgagcc gaccctaact
     2341 ctttctggca gccctacatt cagaccctcc ccagcgaata cgacacccct ctctacttcg
     2401 aagaggatga ggttcgctac cttcagtcca cacaggccat acatgacgtc ttcagccagt
     2461 ataagaacac agcgcggcag tatgcctact tctataaggt catccagacc catcctcatg
     2521 cccacaaact gcccttgaag gattctttca cttatgagga ctacaggtgg gcggtctctt
     2581 ccgttatgac tcgacaaaac cagattccca cggaggatgg ttcccgggtg accctggcgc
     2641 tgattcctct gtgggacatg tgcaatcaca ccaacggcct gatcaccacc ggctacaacc
     2701 tggaggacga ccgctgtgag tgtgtagccc tgcaggactt ccgggccgga gagcagagtg
     2761 aaaataaagc ttggagtgag taaaagtgac aggctgtacg ccatgaaggc cgaggtcctg
     2821 gctcgcgctg gcatcccaac tgtctttgca ttgcatttta cggagccacc catctctgcc
     2881 caacttctgg cttttctccg a
//
LOCUS       XR_004347708            2782 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SET domain containing 3, actin histidine
            methyltransferase (SETD3), transcript variant X9, misc_RNA.
ACCESSION   XR_004347708
VERSION     XR_004347708.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2782
                     /gene="SETD3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746410"
     misc_RNA        1..2782
                     /gene="SETD3"
                     /product="SET domain containing 3, actin histidine
                     methyltransferase, transcript variant X9"
                     /db_xref="GeneID:116746410"
ORIGIN      
        1 cggtcccgcc ccctcctgtc cggccgcagc cgccgccgcc accgcctggg gcttggttga
       61 ggtggactgt gggtcccggc ggagtgtggc gccgccgccg ctgcgcgaag gggcaagcgg
      121 gcagtcagaa aatgggtaag aagagtcgag taaaaacgca gaaatcaggc actggtgcta
      181 cagcaagcgt gtccccgaag gaaaccttga acctaaccag tgagctgttg cagaaatgca
      241 gtagtcctgc ccctggccca ggaaaagaat gggaagagta tgtgcagatc cggtctctag
      301 ttgagaaaat acgaaaaaaa caaaaaggtc tgtctgttac ttttgatgga aaaagagaag
      361 attactttcc tgatctaatg aaatgggcct ctgaaaatgg agcctctgtt gagggttttg
      421 aaatggtgaa cttcaaagaa gagggcttcg gtttgagagc gacaagagat atcaaggcag
      481 aagaattatt tttatgggtt ccacgaaaat tactaatgac tgttgaatct gctaaaaatt
      541 cagtgctggg gcccttgtat tctcaagacc gaattcttca agccatggga aacatcacac
      601 tggcctttca tctgctgtgt gagcgagccg accctaactc tttctggcag ccctacattc
      661 agaccctccc cagcgaatac gacacccctc tctacttcga agaggatgag gttcgctacc
      721 ttcagtccac acaggccata catgacgtct tcagccagta taagaacaca gcgcggcagt
      781 atgcctactt ctataaggtc atccagaccc atcctcatgc ccacaaactg cccttgaagg
      841 attctttcac ttatgaggac tacaggtggg cggtctcttc cgttatgact cgacaaaacc
      901 agattcccac ggaggatggt tcccgggtga ccctggcgct gattcctctg tgggacatgt
      961 gcaatcacac caacggcctg atcaccaccg gctacaacct ggaggacgac cgctgtgagt
     1021 gtgtagccct gcaggacttc cgggccggag agcagagtga aaataaagct tggagtgagt
     1081 aaaagtgaca ggctgtacgc catgaaggcc gaggtcctgg ctcgcgctgg catcccaacc
     1141 tccagtgtct ttgcattgca ttttacggag ccacccatct ctgcccaact tctggctttt
     1201 ctccgagtct tctgcatgac cgaagaagaa ttgaaagaac atttgctggg agataatgcc
     1261 attgacagaa tcttcacctt ggggaactct gagtatcctg ttagctggga caatgaggtc
     1321 aaactgtgga catttcttga agatcgagcc tcacttcttt taaaaacata taaaacaacc
     1381 attgaggaag ataaatcctt cttgaaaaac catgcccttt ccgttcgtgc cacgatggcc
     1441 atcaagttgc gcttaggtga gaaagagatc ttggaaaaag cggtcaagag cgcggccgcg
     1501 aaccgagagc actgccgcag gcaggtggag gggcacgccc cgctccccaa gtacgaggag
     1561 agtaacccgg ggctgctaga gggcgtggcg gactcgcggc tgcccctggt cctcagggac
     1621 ccggacgggg aggccggcgc acaggaggcc ttgaccctca ctgaggctgt ccgcagggca
     1681 aaggctgcag agcacgggct ggtcaacggc gaaaactcta tacccaacgg gaccagttcg
     1741 gaaaaggaaa gtttaaatca agaggaaagt aaaagagcga ccggagacgc caaagaatct
     1801 tcttccgaca gcgccgagga agttggaaag tagctctgag tctgtcgggg gacccagttt
     1861 agcagaagtg tatgaacggc cccgtttaca tcgctgtgtt tccttgttca cggttttctt
     1921 tctgcagaga ggaaaatatg tttttgctgc tttatataaa aatgattttt ttaagttatt
     1981 taaaaaatct agcttccctt tctgattaag attgccatct tgcttcttgg ccaaacaaac
     2041 aagttattga gcagagcaca gagggggaag aggtgcctcg gaagactttg cagacccatt
     2101 gcgggcaaat gtatcttctt cccggggaag aattcagttc ctctgtcagc tgtgcttttg
     2161 tgggcctgtc atcttgacaa ccagaatcaa agcctgccct gcctcctgcc agcggggctt
     2221 gacggtggcg ctctgggggt gcagtgcgaa ggtggggcat ttggctgcgc agtggaaaac
     2281 aggcttgagg ttaggaaact tgagaggctg ggcaaaaaaa aaaaaaaaaa aaaaaaattt
     2341 tcctaaaaaa aaataacacc ccagtaccaa aagaaaaggt aaggtggcaa ccttattttt
     2401 aatagtttta aatgttgatg ataatcctaa ttatataaac acacagacac acacagacac
     2461 acacacagac acacagacac acacagacac acacacctag tgatttctaa agatttgttt
     2521 actttttgtg ttttgtttta ctgtattgag aacttgtcct ttctccttga atccaagtag
     2581 gacatgcatc ctcctaattt taaatgttgg ctctgattgt aaagtggtgc atttgccctc
     2641 cagccctggt gccggggagc ttgcgagggc accatgttca aggcaaggct gctcctggct
     2701 tctctggttg tcacaacaag ctagagattt tcaaagctac acttttgagt aaaaagcctt
     2761 attaaaagga aaacgtaatt aa
//
LOCUS       XM_032617992            2627 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin K (CCNK), transcript variant X1,
            mRNA.
ACCESSION   XM_032617992
VERSION     XM_032617992.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2627
                     /gene="CCNK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746431"
     CDS             440..2188
                     /gene="CCNK"
                     /codon_start=1
                     /product="cyclin-K"
                     /protein_id="XP_032473883.1"
                     /db_xref="GeneID:116746431"
                     /translation="MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPA
                     TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL
                     AGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHP
                     YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLC
                     KFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHAPHQLQQP
                     PSLQPTPPAPPAPQSQPPPGPEPPQPPQKDSQQPAQPQPPPPAQQPKKPSPQPSPPRQ
                     AKRAVVVSPKEESKASEPPPPKIPKIEPPHPPLPPAHPPPDRKPPLAAALGEAEPPGP
                     VEAGDLPKVQIPPPAHPAPVHQPPPLPHRPPPPPPSSYITGMSTSSSYMSGEGYQSLQ
                     SMMKTEGPSYGALPPAYGPPAHLPYHPHVYPPNPPPPPVPPPPASFPPPAIPPPAPGY
                     PPPPPTYNPNFPPPPPRMPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIPP
                     PGMPPVGGLGRAAWMR"
     misc_feature    557..901
                     /gene="CCNK"
                     /note="first cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt1; cd20530"
                     /db_xref="CDD:410233"
     misc_feature    order(707..709,743..745,752..757,761..763,851..853,
                     860..877,881..886,893..901)
                     /gene="CCNK"
                     /note="CDK interface [polypeptide binding]; other site"
                     /db_xref="CDD:410233"
     misc_feature    911..1213
                     /gene="CCNK"
                     /note="second cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt2; cd20531"
                     /db_xref="CDD:410234"
ORIGIN      
        1 gttccgggcc ataattggct gggctaagcc catgcccggg cgttaattgg aagaccggca
       61 ccccgagccc cgcctctcgc gcccaagttc cgttagcagg ttcggttgct tccgaattcc
      121 ctctctccga cgggatgggc cctctggtgg gctcctcctc cctcacgcag tgacccctga
      181 cccgcgggga ggggccagga gaagactggc ggctcgttcc acgtttgaga gctctacttt
      241 cttctcattg gttgacaggc gtccctccgg tcgcttattt ccagtcccgg acgcagcgcg
      301 atgacgtaga ttccccgaca ttccacgtcc aagatggccg cagtcaacaa ggagagacgt
      361 tgctaagggg cttgcctgag gcgaggggat tctaacattt tcagaaagtc tgttggaaag
      421 aacaagtcta cttcaataaa tgaaggagaa taaagaaaat tcaagccctt cagtaacctc
      481 agcaaacctg gaccacacaa aaccatgttg gtactgggat aaaaaagact tggctcatac
      541 accctctcaa ctagaaggac tcgatccggc cactgaggcc cgctaccgcc gagaaggggc
      601 tcggttcatc tttgatgtgg gcacacgttt gggactacac tatgataccc tggcaactgg
      661 aataatttat tttcatcgct tctatatgtt tcattccttc aagcaattcc caagatatgt
      721 gacaggagct tgttgtctct ttctggctgg gaaagtagaa gaaacaccaa aaaaatgtaa
      781 agatatcatc aaaacagctc gtagtttatt aaatgatgta caatttggcc agtttggaga
      841 tgacccaaag gaagaagtaa tggttctgga gagaatctta ctacagacca taaagtttga
      901 tttacaggtg gaacatccgt accaattcct actcaagtat gcgaaacagc tcaaaggtga
      961 taaaaacaaa attcaaaagt tggttcaaat ggcttggaca ttcgtaaacg acagtctctg
     1021 cacgaccttg tcactacagt gggaaccaga gatcatagca gtggcagtga tgtatcttgc
     1081 gggacgtttg tgcaaatttg aaatacagga atggacctcc aaacccatgt accggagatg
     1141 gtgggagcag tttgtgcaag acgtccctgt ggatgttttg gaagacatct gccaccagat
     1201 cctggatctt tactcacaag ggaaacaaca gatgcctcat cacgcgcccc accagctaca
     1261 gcagcccccg tctctccagc ccacgccgcc agcgccgcca gcgccgcagt cacagccgcc
     1321 tccaggcccc gagccgcccc agcccccgca gaaggactcg cagcagccag cccagccgca
     1381 gccaccacca ccggcccagc agcccaagaa accgtccccg cagcctagtc ccccccggca
     1441 ggcgaagcgc gccgtggttg tttctcccaa agaagagagc aaagcatcag aaccaccacc
     1501 acctaaaatt cccaaaattg agccccctca ccctccattg cctccagccc atccacctcc
     1561 agaccggaag ccacccctcg cagccgcctt gggcgaggct gagccgccag gccccgtgga
     1621 agccggcgac ctccccaaag tccagatccc ccctccggcc cacccggccc ccgtgcacca
     1681 gcctccgcca ctgccacacc ggcccccgcc cccgccgccc tccagctaca tcaccggcat
     1741 gtctaccagc agctcctaca tgtccggaga gggctaccag agcctccagt ccatgatgaa
     1801 gaccgagggc ccctcttacg gggctctgcc ccccgcctat ggcccgccgg ctcacctgcc
     1861 ctatcacccc cacgtctacc ccccgaaccc gcccccgccg cccgtgccac cgccgccagc
     1921 ctccttcccg ccacccgcca tccctccccc cgcccctggc tacccgcccc ccccgcccac
     1981 ctacaacccc aatttcccgc cgccaccccc ccgcatgccg cccacccacg cagtgccccc
     2041 tcaccctcct ccaggcctgg gcctgccacc ggctagctac ccgcctccag ctgtgccccc
     2101 tggagggcag ccgcctgtgc ccccgcccat cccgccacct ggcatgcctc cagttggggg
     2161 gctggggcgg gcagcctgga tgaggtaacc tggcgccctt ctttcttcct ttgtttttta
     2221 aagagaagtt tttctaatta acttgaaaag tagtttaagt gggtaagccg cagggtacct
     2281 tgtataatgc tacacagttg tagtatggga agaaatggac cggaccccca agatgaaatt
     2341 ggggtggtcc tccacatctg gggagtgggg acagcagctc tcactggagc ccaggcagag
     2401 ccggttgtga cccgactgtg cgtttggtct caaccagcgt cgtccgcgag tcctgcgctg
     2461 agttacttta cactagtgag aatgttaacc agccatattg gctcaataaa tagcttcagt
     2521 aaggagtgaa tttccttcta gaaatcagtg cctatttttc ctggaaactc cattttaaat
     2581 agtccggttc catctgaagt caagctgttg tcattgctgt cattcca
//
LOCUS       XM_032618002            2471 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin K (CCNK), transcript variant X2,
            mRNA.
ACCESSION   XM_032618002
VERSION     XM_032618002.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2471
                     /gene="CCNK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746431"
     CDS             284..2032
                     /gene="CCNK"
                     /codon_start=1
                     /product="cyclin-K"
                     /protein_id="XP_032473893.1"
                     /db_xref="GeneID:116746431"
                     /translation="MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPA
                     TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL
                     AGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHP
                     YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLC
                     KFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHAPHQLQQP
                     PSLQPTPPAPPAPQSQPPPGPEPPQPPQKDSQQPAQPQPPPPAQQPKKPSPQPSPPRQ
                     AKRAVVVSPKEESKASEPPPPKIPKIEPPHPPLPPAHPPPDRKPPLAAALGEAEPPGP
                     VEAGDLPKVQIPPPAHPAPVHQPPPLPHRPPPPPPSSYITGMSTSSSYMSGEGYQSLQ
                     SMMKTEGPSYGALPPAYGPPAHLPYHPHVYPPNPPPPPVPPPPASFPPPAIPPPAPGY
                     PPPPPTYNPNFPPPPPRMPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIPP
                     PGMPPVGGLGRAAWMR"
     misc_feature    401..745
                     /gene="CCNK"
                     /note="first cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt1; cd20530"
                     /db_xref="CDD:410233"
     misc_feature    order(551..553,587..589,596..601,605..607,695..697,
                     704..721,725..730,737..745)
                     /gene="CCNK"
                     /note="CDK interface [polypeptide binding]; other site"
                     /db_xref="CDD:410233"
     misc_feature    755..1057
                     /gene="CCNK"
                     /note="second cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt2; cd20531"
                     /db_xref="CDD:410234"
ORIGIN      
        1 gtgggtgccg aggggccggg cgcttcctgc acctgctgcc acctctgggc gggcagagcg
       61 gggaacggag ctacggccgc cgggaaggga cgctgggcat cggcgtccct ccggtcgctt
      121 atttccagtc ccggacgcag cgcgatgacg tagattcccc gacattccac gtccaagatg
      181 gccgcagtca acaaggagag acgttgctaa ggggcttgcc tgaggcgagg ggattctaac
      241 attttcagaa agtctgttgg aaagaacaag tctacttcaa taaatgaagg agaataaaga
      301 aaattcaagc ccttcagtaa cctcagcaaa cctggaccac acaaaaccat gttggtactg
      361 ggataaaaaa gacttggctc atacaccctc tcaactagaa ggactcgatc cggccactga
      421 ggcccgctac cgccgagaag gggctcggtt catctttgat gtgggcacac gtttgggact
      481 acactatgat accctggcaa ctggaataat ttattttcat cgcttctata tgtttcattc
      541 cttcaagcaa ttcccaagat atgtgacagg agcttgttgt ctctttctgg ctgggaaagt
      601 agaagaaaca ccaaaaaaat gtaaagatat catcaaaaca gctcgtagtt tattaaatga
      661 tgtacaattt ggccagtttg gagatgaccc aaaggaagaa gtaatggttc tggagagaat
      721 cttactacag accataaagt ttgatttaca ggtggaacat ccgtaccaat tcctactcaa
      781 gtatgcgaaa cagctcaaag gtgataaaaa caaaattcaa aagttggttc aaatggcttg
      841 gacattcgta aacgacagtc tctgcacgac cttgtcacta cagtgggaac cagagatcat
      901 agcagtggca gtgatgtatc ttgcgggacg tttgtgcaaa tttgaaatac aggaatggac
      961 ctccaaaccc atgtaccgga gatggtggga gcagtttgtg caagacgtcc ctgtggatgt
     1021 tttggaagac atctgccacc agatcctgga tctttactca caagggaaac aacagatgcc
     1081 tcatcacgcg ccccaccagc tacagcagcc cccgtctctc cagcccacgc cgccagcgcc
     1141 gccagcgccg cagtcacagc cgcctccagg ccccgagccg ccccagcccc cgcagaagga
     1201 ctcgcagcag ccagcccagc cgcagccacc accaccggcc cagcagccca agaaaccgtc
     1261 cccgcagcct agtccccccc ggcaggcgaa gcgcgccgtg gttgtttctc ccaaagaaga
     1321 gagcaaagca tcagaaccac caccacctaa aattcccaaa attgagcccc ctcaccctcc
     1381 attgcctcca gcccatccac ctccagaccg gaagccaccc ctcgcagccg ccttgggcga
     1441 ggctgagccg ccaggccccg tggaagccgg cgacctcccc aaagtccaga tcccccctcc
     1501 ggcccacccg gcccccgtgc accagcctcc gccactgcca caccggcccc cgcccccgcc
     1561 gccctccagc tacatcaccg gcatgtctac cagcagctcc tacatgtccg gagagggcta
     1621 ccagagcctc cagtccatga tgaagaccga gggcccctct tacggggctc tgccccccgc
     1681 ctatggcccg ccggctcacc tgccctatca cccccacgtc taccccccga acccgccccc
     1741 gccgcccgtg ccaccgccgc cagcctcctt cccgccaccc gccatccctc cccccgcccc
     1801 tggctacccg ccccccccgc ccacctacaa ccccaatttc ccgccgccac ccccccgcat
     1861 gccgcccacc cacgcagtgc cccctcaccc tcctccaggc ctgggcctgc caccggctag
     1921 ctacccgcct ccagctgtgc cccctggagg gcagccgcct gtgcccccgc ccatcccgcc
     1981 acctggcatg cctccagttg gggggctggg gcgggcagcc tggatgaggt aacctggcgc
     2041 ccttctttct tcctttgttt tttaaagaga agtttttcta attaacttga aaagtagttt
     2101 aagtgggtaa gccgcagggt accttgtata atgctacaca gttgtagtat gggaagaaat
     2161 ggaccggacc cccaagatga aattggggtg gtcctccaca tctggggagt ggggacagca
     2221 gctctcactg gagcccaggc agagccggtt gtgacccgac tgtgcgtttg gtctcaacca
     2281 gcgtcgtccg cgagtcctgc gctgagttac tttacactag tgagaatgtt aaccagccat
     2341 attggctcaa taaatagctt cagtaaggag tgaatttcct tctagaaatc agtgcctatt
     2401 tttcctggaa actccatttt aaatagtccg gttccatctg aagtcaagct gttgtcattg
     2461 ctgtcattcc a
//
LOCUS       XM_032618014            2510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin K (CCNK), transcript variant X3,
            mRNA.
ACCESSION   XM_032618014
VERSION     XM_032618014.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2510
                     /gene="CCNK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746431"
     CDS             323..2071
                     /gene="CCNK"
                     /codon_start=1
                     /product="cyclin-K"
                     /protein_id="XP_032473905.1"
                     /db_xref="GeneID:116746431"
                     /translation="MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPA
                     TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL
                     AGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHP
                     YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLC
                     KFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHAPHQLQQP
                     PSLQPTPPAPPAPQSQPPPGPEPPQPPQKDSQQPAQPQPPPPAQQPKKPSPQPSPPRQ
                     AKRAVVVSPKEESKASEPPPPKIPKIEPPHPPLPPAHPPPDRKPPLAAALGEAEPPGP
                     VEAGDLPKVQIPPPAHPAPVHQPPPLPHRPPPPPPSSYITGMSTSSSYMSGEGYQSLQ
                     SMMKTEGPSYGALPPAYGPPAHLPYHPHVYPPNPPPPPVPPPPASFPPPAIPPPAPGY
                     PPPPPTYNPNFPPPPPRMPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIPP
                     PGMPPVGGLGRAAWMR"
     misc_feature    440..784
                     /gene="CCNK"
                     /note="first cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt1; cd20530"
                     /db_xref="CDD:410233"
     misc_feature    order(590..592,626..628,635..640,644..646,734..736,
                     743..760,764..769,776..784)
                     /gene="CCNK"
                     /note="CDK interface [polypeptide binding]; other site"
                     /db_xref="CDD:410233"
     misc_feature    794..1096
                     /gene="CCNK"
                     /note="second cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt2; cd20531"
                     /db_xref="CDD:410234"
ORIGIN      
        1 ggcgggctcc ggggccagag cggcctgctc ggcccccgcc aggttccggg ccataattgg
       61 ctgggctaag cccatgcccg ggcgttaatt ggaagaccgg caccccgagc cccgcctctc
      121 gcgcccaagt tccgttagca ggcgtccctc cggtcgctta tttccagtcc cggacgcagc
      181 gcgatgacgt agattccccg acattccacg tccaagatgg ccgcagtcaa caaggagaga
      241 cgttgctaag gggcttgcct gaggcgaggg gattctaaca ttttcagaaa gtctgttgga
      301 aagaacaagt ctacttcaat aaatgaagga gaataaagaa aattcaagcc cttcagtaac
      361 ctcagcaaac ctggaccaca caaaaccatg ttggtactgg gataaaaaag acttggctca
      421 tacaccctct caactagaag gactcgatcc ggccactgag gcccgctacc gccgagaagg
      481 ggctcggttc atctttgatg tgggcacacg tttgggacta cactatgata ccctggcaac
      541 tggaataatt tattttcatc gcttctatat gtttcattcc ttcaagcaat tcccaagata
      601 tgtgacagga gcttgttgtc tctttctggc tgggaaagta gaagaaacac caaaaaaatg
      661 taaagatatc atcaaaacag ctcgtagttt attaaatgat gtacaatttg gccagtttgg
      721 agatgaccca aaggaagaag taatggttct ggagagaatc ttactacaga ccataaagtt
      781 tgatttacag gtggaacatc cgtaccaatt cctactcaag tatgcgaaac agctcaaagg
      841 tgataaaaac aaaattcaaa agttggttca aatggcttgg acattcgtaa acgacagtct
      901 ctgcacgacc ttgtcactac agtgggaacc agagatcata gcagtggcag tgatgtatct
      961 tgcgggacgt ttgtgcaaat ttgaaataca ggaatggacc tccaaaccca tgtaccggag
     1021 atggtgggag cagtttgtgc aagacgtccc tgtggatgtt ttggaagaca tctgccacca
     1081 gatcctggat ctttactcac aagggaaaca acagatgcct catcacgcgc cccaccagct
     1141 acagcagccc ccgtctctcc agcccacgcc gccagcgccg ccagcgccgc agtcacagcc
     1201 gcctccaggc cccgagccgc cccagccccc gcagaaggac tcgcagcagc cagcccagcc
     1261 gcagccacca ccaccggccc agcagcccaa gaaaccgtcc ccgcagccta gtcccccccg
     1321 gcaggcgaag cgcgccgtgg ttgtttctcc caaagaagag agcaaagcat cagaaccacc
     1381 accacctaaa attcccaaaa ttgagccccc tcaccctcca ttgcctccag cccatccacc
     1441 tccagaccgg aagccacccc tcgcagccgc cttgggcgag gctgagccgc caggccccgt
     1501 ggaagccggc gacctcccca aagtccagat cccccctccg gcccacccgg cccccgtgca
     1561 ccagcctccg ccactgccac accggccccc gcccccgccg ccctccagct acatcaccgg
     1621 catgtctacc agcagctcct acatgtccgg agagggctac cagagcctcc agtccatgat
     1681 gaagaccgag ggcccctctt acggggctct gccccccgcc tatggcccgc cggctcacct
     1741 gccctatcac ccccacgtct accccccgaa cccgcccccg ccgcccgtgc caccgccgcc
     1801 agcctccttc ccgccacccg ccatccctcc ccccgcccct ggctacccgc cccccccgcc
     1861 cacctacaac cccaatttcc cgccgccacc cccccgcatg ccgcccaccc acgcagtgcc
     1921 ccctcaccct cctccaggcc tgggcctgcc accggctagc tacccgcctc cagctgtgcc
     1981 ccctggaggg cagccgcctg tgcccccgcc catcccgcca cctggcatgc ctccagttgg
     2041 ggggctgggg cgggcagcct ggatgaggta acctggcgcc cttctttctt cctttgtttt
     2101 ttaaagagaa gtttttctaa ttaacttgaa aagtagttta agtgggtaag ccgcagggta
     2161 ccttgtataa tgctacacag ttgtagtatg ggaagaaatg gaccggaccc ccaagatgaa
     2221 attggggtgg tcctccacat ctggggagtg gggacagcag ctctcactgg agcccaggca
     2281 gagccggttg tgacccgact gtgcgtttgg tctcaaccag cgtcgtccgc gagtcctgcg
     2341 ctgagttact ttacactagt gagaatgtta accagccata ttggctcaat aaatagcttc
     2401 agtaaggagt gaatttcctt ctagaaatca gtgcctattt ttcctggaaa ctccatttta
     2461 aatagtccgg ttccatctga agtcaagctg ttgtcattgc tgtcattcca
//
LOCUS       XM_032618022            2705 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin K (CCNK), transcript variant X4,
            mRNA.
ACCESSION   XM_032618022
VERSION     XM_032618022.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2705
                     /gene="CCNK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746431"
     CDS             518..2266
                     /gene="CCNK"
                     /codon_start=1
                     /product="cyclin-K"
                     /protein_id="XP_032473913.1"
                     /db_xref="GeneID:116746431"
                     /translation="MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPA
                     TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL
                     AGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHP
                     YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLC
                     KFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHAPHQLQQP
                     PSLQPTPPAPPAPQSQPPPGPEPPQPPQKDSQQPAQPQPPPPAQQPKKPSPQPSPPRQ
                     AKRAVVVSPKEESKASEPPPPKIPKIEPPHPPLPPAHPPPDRKPPLAAALGEAEPPGP
                     VEAGDLPKVQIPPPAHPAPVHQPPPLPHRPPPPPPSSYITGMSTSSSYMSGEGYQSLQ
                     SMMKTEGPSYGALPPAYGPPAHLPYHPHVYPPNPPPPPVPPPPASFPPPAIPPPAPGY
                     PPPPPTYNPNFPPPPPRMPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIPP
                     PGMPPVGGLGRAAWMR"
     misc_feature    635..979
                     /gene="CCNK"
                     /note="first cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt1; cd20530"
                     /db_xref="CDD:410233"
     misc_feature    order(785..787,821..823,830..835,839..841,929..931,
                     938..955,959..964,971..979)
                     /gene="CCNK"
                     /note="CDK interface [polypeptide binding]; other site"
                     /db_xref="CDD:410233"
     misc_feature    989..1291
                     /gene="CCNK"
                     /note="second cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt2; cd20531"
                     /db_xref="CDD:410234"
ORIGIN      
        1 tcggcccccg ccaggttccg ggccataatt ggctgggcta agcccatgcc cgggcgttaa
       61 ttggaagacc ggcaccccga gccccgcctc tcgcgcccaa gttccgttag caggttcggt
      121 tgcttccgaa ttccctctct ccgacgggat gggccctctg gtgggctcct cctccctcac
      181 gcagtgaccc ctgacccgcg gggaggggcc aggagaagac tggcggctcg ttccacgttt
      241 gagagctcta ctttcttctc attggttgac aggcgtccct ccggtcgctt atttccagtc
      301 ccggacgcag cgcgatgacg tagattcccc gacattccac gtccaagatg gccgcagtca
      361 acaaggagag acgttgctaa ggggcttgcc tgaggcgagg ggtgagtgac cgacggaccg
      421 cgggcagcgc cactcaagtc ccgcgtacct ggaggtcgga ttagggattc taacattttc
      481 agaaagtctg ttggaaagaa caagtctact tcaataaatg aaggagaata aagaaaattc
      541 aagcccttca gtaacctcag caaacctgga ccacacaaaa ccatgttggt actgggataa
      601 aaaagacttg gctcatacac cctctcaact agaaggactc gatccggcca ctgaggcccg
      661 ctaccgccga gaaggggctc ggttcatctt tgatgtgggc acacgtttgg gactacacta
      721 tgataccctg gcaactggaa taatttattt tcatcgcttc tatatgtttc attccttcaa
      781 gcaattccca agatatgtga caggagcttg ttgtctcttt ctggctggga aagtagaaga
      841 aacaccaaaa aaatgtaaag atatcatcaa aacagctcgt agtttattaa atgatgtaca
      901 atttggccag tttggagatg acccaaagga agaagtaatg gttctggaga gaatcttact
      961 acagaccata aagtttgatt tacaggtgga acatccgtac caattcctac tcaagtatgc
     1021 gaaacagctc aaaggtgata aaaacaaaat tcaaaagttg gttcaaatgg cttggacatt
     1081 cgtaaacgac agtctctgca cgaccttgtc actacagtgg gaaccagaga tcatagcagt
     1141 ggcagtgatg tatcttgcgg gacgtttgtg caaatttgaa atacaggaat ggacctccaa
     1201 acccatgtac cggagatggt gggagcagtt tgtgcaagac gtccctgtgg atgttttgga
     1261 agacatctgc caccagatcc tggatcttta ctcacaaggg aaacaacaga tgcctcatca
     1321 cgcgccccac cagctacagc agcccccgtc tctccagccc acgccgccag cgccgccagc
     1381 gccgcagtca cagccgcctc caggccccga gccgccccag cccccgcaga aggactcgca
     1441 gcagccagcc cagccgcagc caccaccacc ggcccagcag cccaagaaac cgtccccgca
     1501 gcctagtccc ccccggcagg cgaagcgcgc cgtggttgtt tctcccaaag aagagagcaa
     1561 agcatcagaa ccaccaccac ctaaaattcc caaaattgag ccccctcacc ctccattgcc
     1621 tccagcccat ccacctccag accggaagcc acccctcgca gccgccttgg gcgaggctga
     1681 gccgccaggc cccgtggaag ccggcgacct ccccaaagtc cagatccccc ctccggccca
     1741 cccggccccc gtgcaccagc ctccgccact gccacaccgg cccccgcccc cgccgccctc
     1801 cagctacatc accggcatgt ctaccagcag ctcctacatg tccggagagg gctaccagag
     1861 cctccagtcc atgatgaaga ccgagggccc ctcttacggg gctctgcccc ccgcctatgg
     1921 cccgccggct cacctgccct atcaccccca cgtctacccc ccgaacccgc ccccgccgcc
     1981 cgtgccaccg ccgccagcct ccttcccgcc acccgccatc cctccccccg cccctggcta
     2041 cccgcccccc ccgcccacct acaaccccaa tttcccgccg ccaccccccc gcatgccgcc
     2101 cacccacgca gtgccccctc accctcctcc aggcctgggc ctgccaccgg ctagctaccc
     2161 gcctccagct gtgccccctg gagggcagcc gcctgtgccc ccgcccatcc cgccacctgg
     2221 catgcctcca gttggggggc tggggcgggc agcctggatg aggtaacctg gcgcccttct
     2281 ttcttccttt gttttttaaa gagaagtttt tctaattaac ttgaaaagta gtttaagtgg
     2341 gtaagccgca gggtaccttg tataatgcta cacagttgta gtatgggaag aaatggaccg
     2401 gacccccaag atgaaattgg ggtggtcctc cacatctggg gagtggggac agcagctctc
     2461 actggagccc aggcagagcc ggttgtgacc cgactgtgcg tttggtctca accagcgtcg
     2521 tccgcgagtc ctgcgctgag ttactttaca ctagtgagaa tgttaaccag ccatattggc
     2581 tcaataaata gcttcagtaa ggagtgaatt tccttctaga aatcagtgcc tatttttcct
     2641 ggaaactcca ttttaaatag tccggttcca tctgaagtca agctgttgtc attgctgtca
     2701 ttcca
//
LOCUS       XM_032618032            2389 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin K (CCNK), transcript variant X5,
            mRNA.
ACCESSION   XM_032618032
VERSION     XM_032618032.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2389
                     /gene="CCNK"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746431"
     CDS             202..1950
                     /gene="CCNK"
                     /codon_start=1
                     /product="cyclin-K"
                     /protein_id="XP_032473923.1"
                     /db_xref="GeneID:116746431"
                     /translation="MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPA
                     TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL
                     AGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHP
                     YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLC
                     KFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHAPHQLQQP
                     PSLQPTPPAPPAPQSQPPPGPEPPQPPQKDSQQPAQPQPPPPAQQPKKPSPQPSPPRQ
                     AKRAVVVSPKEESKASEPPPPKIPKIEPPHPPLPPAHPPPDRKPPLAAALGEAEPPGP
                     VEAGDLPKVQIPPPAHPAPVHQPPPLPHRPPPPPPSSYITGMSTSSSYMSGEGYQSLQ
                     SMMKTEGPSYGALPPAYGPPAHLPYHPHVYPPNPPPPPVPPPPASFPPPAIPPPAPGY
                     PPPPPTYNPNFPPPPPRMPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIPP
                     PGMPPVGGLGRAAWMR"
     misc_feature    319..663
                     /gene="CCNK"
                     /note="first cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt1; cd20530"
                     /db_xref="CDD:410233"
     misc_feature    order(469..471,505..507,514..519,523..525,613..615,
                     622..639,643..648,655..663)
                     /gene="CCNK"
                     /note="CDK interface [polypeptide binding]; other site"
                     /db_xref="CDD:410233"
     misc_feature    673..975
                     /gene="CCNK"
                     /note="second cyclin box found in cyclin-K (CCNK) and
                     similar proteins; Region: CYCLIN_CCNK_rpt2; cd20531"
                     /db_xref="CDD:410234"
ORIGIN      
        1 gagtcgctct ttccggattc cgccaccctc cgctacctcc cgggtgcaga tcgaagttag
       61 cgggcgacgg cggggccgcg agacgcgctc cgggagaggg tctgaggcgc aggagcgggt
      121 cagggaggcc ggcgcggacc gtagagcagg attctaacat tttcagaaag tctgttggaa
      181 agaacaagtc tacttcaata aatgaaggag aataaagaaa attcaagccc ttcagtaacc
      241 tcagcaaacc tggaccacac aaaaccatgt tggtactggg ataaaaaaga cttggctcat
      301 acaccctctc aactagaagg actcgatccg gccactgagg cccgctaccg ccgagaaggg
      361 gctcggttca tctttgatgt gggcacacgt ttgggactac actatgatac cctggcaact
      421 ggaataattt attttcatcg cttctatatg tttcattcct tcaagcaatt cccaagatat
      481 gtgacaggag cttgttgtct ctttctggct gggaaagtag aagaaacacc aaaaaaatgt
      541 aaagatatca tcaaaacagc tcgtagttta ttaaatgatg tacaatttgg ccagtttgga
      601 gatgacccaa aggaagaagt aatggttctg gagagaatct tactacagac cataaagttt
      661 gatttacagg tggaacatcc gtaccaattc ctactcaagt atgcgaaaca gctcaaaggt
      721 gataaaaaca aaattcaaaa gttggttcaa atggcttgga cattcgtaaa cgacagtctc
      781 tgcacgacct tgtcactaca gtgggaacca gagatcatag cagtggcagt gatgtatctt
      841 gcgggacgtt tgtgcaaatt tgaaatacag gaatggacct ccaaacccat gtaccggaga
      901 tggtgggagc agtttgtgca agacgtccct gtggatgttt tggaagacat ctgccaccag
      961 atcctggatc tttactcaca agggaaacaa cagatgcctc atcacgcgcc ccaccagcta
     1021 cagcagcccc cgtctctcca gcccacgccg ccagcgccgc cagcgccgca gtcacagccg
     1081 cctccaggcc ccgagccgcc ccagcccccg cagaaggact cgcagcagcc agcccagccg
     1141 cagccaccac caccggccca gcagcccaag aaaccgtccc cgcagcctag tcccccccgg
     1201 caggcgaagc gcgccgtggt tgtttctccc aaagaagaga gcaaagcatc agaaccacca
     1261 ccacctaaaa ttcccaaaat tgagccccct caccctccat tgcctccagc ccatccacct
     1321 ccagaccgga agccacccct cgcagccgcc ttgggcgagg ctgagccgcc aggccccgtg
     1381 gaagccggcg acctccccaa agtccagatc ccccctccgg cccacccggc ccccgtgcac
     1441 cagcctccgc cactgccaca ccggcccccg cccccgccgc cctccagcta catcaccggc
     1501 atgtctacca gcagctccta catgtccgga gagggctacc agagcctcca gtccatgatg
     1561 aagaccgagg gcccctctta cggggctctg ccccccgcct atggcccgcc ggctcacctg
     1621 ccctatcacc cccacgtcta ccccccgaac ccgcccccgc cgcccgtgcc accgccgcca
     1681 gcctccttcc cgccacccgc catccctccc cccgcccctg gctacccgcc ccccccgccc
     1741 acctacaacc ccaatttccc gccgccaccc ccccgcatgc cgcccaccca cgcagtgccc
     1801 cctcaccctc ctccaggcct gggcctgcca ccggctagct acccgcctcc agctgtgccc
     1861 cctggagggc agccgcctgt gcccccgccc atcccgccac ctggcatgcc tccagttggg
     1921 gggctggggc gggcagcctg gatgaggtaa cctggcgccc ttctttcttc ctttgttttt
     1981 taaagagaag tttttctaat taacttgaaa agtagtttaa gtgggtaagc cgcagggtac
     2041 cttgtataat gctacacagt tgtagtatgg gaagaaatgg accggacccc caagatgaaa
     2101 ttggggtggt cctccacatc tggggagtgg ggacagcagc tctcactgga gcccaggcag
     2161 agccggttgt gacccgactg tgcgtttggt ctcaaccagc gtcgtccgcg agtcctgcgc
     2221 tgagttactt tacactagtg agaatgttaa ccagccatat tggctcaata aatagcttca
     2281 gtaaggagtg aatttccttc tagaaatcag tgcctatttt tcctggaaac tccattttaa
     2341 atagtccggt tccatctgaa gtcaagctgt tgtcattgct gtcattcca
//
LOCUS       XM_032618046            4526 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 85C
            (CCDC85C), transcript variant X1, mRNA.
ACCESSION   XM_032618046
VERSION     XM_032618046.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4526
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4526
                     /gene="CCDC85C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746445"
     CDS             108..1391
                     /gene="CCDC85C"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 85C
                     isoform X1"
                     /protein_id="XP_032473937.1"
                     /db_xref="GeneID:116746445"
                     /translation="MAKPPAAAAAAAAAAAAAASSEELSQVPDEELLRWSKEELARRL
                     RRAEGEKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDD
                     DRQKGRKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLL
                     DEERAALAGGAGGGGGGGGGGAGSRSSIDSQASLSGPLAGGAAGAGTRDVGDGSSTSS
                     AGSGGSPDHHHHVPPPLLPPGPHKAPDGKAVATRRSLDDLSAPPHHRSIPNGLHDPSS
                     TYIRQLETKVKLLEGDKLLAQQAGSGEFRTLRKGFSPYHSESQLSSLPPSYQDALQNG
                     PACTVPELSPPPSGGYSSAGQKPEAVVHAMKVLEVHENLDRQLQDSCEEDLSEKEKAI
                     VREMCNVVWRKLGDAASSKPSIRQHLSGNQFKGPL"
     misc_feature    168..737
                     /gene="CCDC85C"
                     /note="CCDC85 family; Region: CCDC85; pfam10226"
                     /db_xref="CDD:463009"
ORIGIN      
        1 agcccctggt cgccccccgc ccgcgggcgg accggcccag cgcagccccg gcacggggag
       61 cgccggccgg gcgagggcgc gggcgatgcc gcggtgacgg ccccgccatg gcgaagcccc
      121 cggcggcggc ggcggcggcg gcggcggcgg cggcggcggc ggcgtcgtcg gaggagctga
      181 gccaggtgcc ggacgaggag ctgctgcgct ggagcaagga ggagctggcg cggcgcctgc
      241 ggcgcgccga gggcgagaag gtgggcctca tgctggagca cggcggcctg atgcgcgacg
      301 tgaaccggcg gctgcagcag cacctgctgg agatccgcgg cctcaaggac gtgaaccagc
      361 ggttgcagga cgacaaccag gagctgcgcg agctctgctg cttcctcgac gacgaccggc
      421 agaaggggcg caagctggcg cgcgagtggc agcgcttcgg gcgccacgcg gccggcgccg
      481 tgtggcacga ggtggcccgc tcgcagcaga agctgcgcga gctcgaggcg cgccaggagg
      541 ccctgctgcg tgagaacctg gagctcaagg agctggtgct gctgctggac gaggagcgcg
      601 cggcgctggc ggggggcgcg ggcggcggcg gcggcggcgg cggtggtggc gccggctccc
      661 gtagctccat cgacagccag gccagcctga gcgggccgct ggcgggcggc gcggccggag
      721 cggggacccg cgacgtgggc gacggcagca gcacgtcgag cgccggcagc ggcggcagcc
      781 ccgaccacca ccaccacgtc ccgcccccgc tgctgccccc cgggccgcac aaggccccgg
      841 acggcaaggc tgtcgcaacg cgcaggtccc tggacgacct gtcggcgcca ccgcaccacc
      901 gaagcatccc caacggcctg cacgatccct cgtccaccta catcaggcag ctggagacca
      961 aggtgaagct gctggagggt gacaagctcc tggcacagca ggcaggctct ggagagttcc
     1021 ggacgctgcg gaaaggcttc tccccgtacc actcggagtc ccagctctcc agcctgccgc
     1081 cctcctacca ggatgcgctg cagaatggcc cggcctgcac ggttcccgag ctgtccccgc
     1141 cgccctcggg cggctacagc tctgcgggac agaagcccga ggctgtcgta cacgcgatga
     1201 aggtcctaga ggtacatgag aacctggacc ggcagctcca ggacagctgt gaggaggacc
     1261 tgagtgagaa ggagaaggcc atcgtccgag agatgtgcaa cgtggtctgg agaaaactgg
     1321 gagatgccgc cagctccaag ccctccatcc ggcagcacct gtctggaaac cagttcaaag
     1381 ggcctttgta gggccgttcc cctgtggacg tggactggcc ctgcctgggg tccccagacg
     1441 tgggcaggct ctcgcgccga gccactgtct tctttttccg tggtgaattg tacataggac
     1501 gctgcctgct gtggcctggc tgccgggggt gcgactccat ttcccacctc tcacacacca
     1561 gcaaaccggg aagactgttc cccgcagcag agcggcctgg acaacctcct tcctgctctg
     1621 gggcccgggc tctgggctcc actggcgaga ggccgaggct gctcagagat gtccggccca
     1681 ggaaccgtgc cgggctgtgc ccagccttgg tggaggggca cctcatcaag acctccatcc
     1741 ccggctgcca cctgtgctgg acagaggccg ctggcagctg gactgatgca tggggcacca
     1801 cttctgaccc gcctgctgtg gcttgaacac tggctccata agcactgggt ccccagagtc
     1861 gtggacgagg aaactcaccg gcggcccttc ctctggcccc agggcccagc ctccccgctg
     1921 ccggctctgc ttgtttttag agttcacgcc cctacccctg gccacacact ctgcagtgtc
     1981 ccctcaccct gtcctaggct gtgccctatc cttttgggtc cctcctgccc agggcccgag
     2041 gcacctccat ttctgtgctt cgcatcatgg gctgtgtgga gtctctgggc tgggcctctc
     2101 tctctgcatg ggtggcactg ggccgtggcc gggcctctgc tcaggaacgg ttgcccccgg
     2161 agcttggacc cctcttggat cactgtgggc ggagtcgcgt ggccgtaggt gaaggagttc
     2221 tgccctcctt gggagaagcc ctgcttggct ctgttttcat tttcctgtgt gaccctcagc
     2281 aagtcactca gcctctctgg gcccctggtc gggaaaggag ggctcagagg ttcgaggcca
     2341 tcggctctag tcagcctgtg tcctcactca cagcacgcga gccaacgggg tcctcctgct
     2401 ggagaggcgg ctggtgggtg ggctgggagg ggcggaggcc ccagctgagt tccgctgcct
     2461 cgctgcctcc tctcggtgga cggtcacctc ccttcctgag cctcagagtc ctcccctgca
     2521 gagtgggcag cctaaggtcc tccttgcagg gctctgggga tcaagtaaga ccttcagtgt
     2581 aaaaggatcg tgtataaact gtaaagcgag acatgtaaat tttaaagttt gtgtgcgagg
     2641 gcagtgaggc cccgagggcg taagtgatca gtggcgtatc acaaacgaga tcccagagcc
     2701 tggggggtgg ggacaggccg ctgttgtaac cagcccccgt ccacctgctg tctgcagttc
     2761 ctcccccatc gctggactcc agtggtcatt agagctctgt gcgcgggcga gcgaagagcc
     2821 cgagaggctg gcttggcatc ggacaggcct cattcgaggc tcgcgcgagg gatggggacc
     2881 aggttgaggg gacggacgag gctgccccgt ccctctcccc agcggggacg ctgagccgtc
     2941 cccaccgcct gtctgccatc ggcacccttg ggtcgacact caggggaaag gcccgcggcc
     3001 ctcactgtgc ccgaggagtg ctgaacgggt gccggtgacg gcgtcgggca cggtcctctt
     3061 gccctgggtg ttacaggaag ctatgggctc tctggaagga gctggtccct aggtcatgtg
     3121 atgagatccc tgtcactagg ggtgtgcact tggagctggg tgaacatcct tggtcacgtt
     3181 ctgggtgact tctgcccggg tgggcagtca gctggagggc agaggtcccc tcccgggtct
     3241 tggagtccaa agaaccatgg agcagctcga ggggggtctg ggtctcttgg gtgggagcca
     3301 catctgagaa cctgtgtgtc acgtctgggt caggctagct tggccaccgc tgaaaataag
     3361 caataagtca ggtgtcctgg tgactgcagg tctcctgcaa actgacccag ggaagaacag
     3421 cctccaaggg acctttccct gccagaggga ggtgaccctg tcccctagtg ctgcggtggc
     3481 gtccggggag tgggtcaggc gttccctcca gaagcagcct cccgcccgcc atgaaggcag
     3541 gcagcaccag ccggtgccga catctccttc ctgcccctgc ctgtgtcccg gagccagcac
     3601 tgcatgggaa tggcttttga ggacagaatc gtacctgtga cggcatctct taacgtaagc
     3661 tgtcgaaaag cctgcagcgc ctctgcacgc cccacgccgg cctggggccc agctgcagcg
     3721 ggagcccacg gctgggagga gggtcctggg ggccagctcg gggtgagtcc ctgctctgcc
     3781 actagcaggg agtgcgtagg gggtgacact ggcgaacctc ccatctggag cctcagctca
     3841 gagagctcgt ggtggggtgt agctgaacct gatgtccttt cataaacaca ctgtttctag
     3901 cgcccgaagc cccgtgtgcc acctgtgctg tggcttcctt tcccgctgtg atggatgtcg
     3961 cccttccctc ctcatcccag gtggccgagc ccatcctgga gtcggaatcc actgagcaca
     4021 tttttatcca gaagttatta gccacacatc agtgttgttc aaagagaaaa aagtgacctt
     4081 ttcttttttc ttgaaaactt gagaggaaac aatacatact actgactttt tttttttaag
     4141 aaacaaagga aatgcatgac tgcagagcgg gagaggtgta tatttttcat aacgtggggg
     4201 aagtacttgt gctgctctct ggggatgggc ggaccgcctg gcccctggcc ccaggccggc
     4261 agccgcgctc tatctacctt ctgtcggatg tgaccgcccg agtactgggg ccgccccctc
     4321 cccagctctg ggcagagctg ggagccctgg actcctgtgc ccgtttctac cttctattga
     4381 accactttga tttggggaga gaaaaaaaaa ttagaacttt ttgatagtgt ggtaaaaaca
     4441 ttgatttgaa ctattttagt aaaaggagta acagagaaga ttgtgatagt gtatactttg
     4501 cgttagataa ataaaggctc ttcgca
//
LOCUS       XM_032618055            4524 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 85C
            (CCDC85C), transcript variant X2, mRNA.
ACCESSION   XM_032618055
VERSION     XM_032618055.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4524
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4524
                     /gene="CCDC85C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746445"
     CDS             109..1389
                     /gene="CCDC85C"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 85C
                     isoform X2"
                     /protein_id="XP_032473946.1"
                     /db_xref="GeneID:116746445"
                     /translation="MAKPPAAAAAAAAAAAAAASSEELSQVPDEELLRWSKEELARRL
                     RRAEGEKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDD
                     DRQKGRKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLL
                     DEERAALAGGAGGGGGGGGGGAGSRSSIDSQASLSGPLAGGAAGAGTRDVGDGSSTSS
                     AGSGGSPDHHHHVPPPLLPPGPHKAPDGKAVATRRSLDDLSAPPHHRSIPNGLHDPSS
                     TYIRQLETKVKLLEGDKLLAQAGSGEFRTLRKGFSPYHSESQLSSLPPSYQDALQNGP
                     ACTVPELSPPPSGGYSSAGQKPEAVVHAMKVLEVHENLDRQLQDSCEEDLSEKEKAIV
                     REMCNVVWRKLGDAASSKPSIRQHLSGNQFKGPL"
     misc_feature    169..738
                     /gene="CCDC85C"
                     /note="CCDC85 family; Region: CCDC85; pfam10226"
                     /db_xref="CDD:463009"
ORIGIN      
        1 gagcccctgg tcgccccccg cccgcgggcg gaccggccca gcgcagcccc ggcacgggga
       61 gcgccggccg ggcgagggcg cgggcgatgc cgcggtgacg gccccgccat ggcgaagccc
      121 ccggcggcgg cggcggcggc ggcggcggcg gcggcggcgg cggcgtcgtc ggaggagctg
      181 agccaggtgc cggacgagga gctgctgcgc tggagcaagg aggagctggc gcggcgcctg
      241 cggcgcgccg agggcgagaa ggtgggcctc atgctggagc acggcggcct gatgcgcgac
      301 gtgaaccggc ggctgcagca gcacctgctg gagatccgcg gcctcaagga cgtgaaccag
      361 cggttgcagg acgacaacca ggagctgcgc gagctctgct gcttcctcga cgacgaccgg
      421 cagaaggggc gcaagctggc gcgcgagtgg cagcgcttcg ggcgccacgc ggccggcgcc
      481 gtgtggcacg aggtggcccg ctcgcagcag aagctgcgcg agctcgaggc gcgccaggag
      541 gccctgctgc gtgagaacct ggagctcaag gagctggtgc tgctgctgga cgaggagcgc
      601 gcggcgctgg cggggggcgc gggcggcggc ggcggcggcg gcggtggtgg cgccggctcc
      661 cgtagctcca tcgacagcca ggccagcctg agcgggccgc tggcgggcgg cgcggccgga
      721 gcggggaccc gcgacgtggg cgacggcagc agcacgtcga gcgccggcag cggcggcagc
      781 cccgaccacc accaccacgt cccgcccccg ctgctgcccc ccgggccgca caaggccccg
      841 gacggcaagg ctgtcgcaac gcgcaggtcc ctggacgacc tgtcggcgcc accgcaccac
      901 cgaagcatcc ccaacggcct gcacgatccc tcgtccacct acatcaggca gctggagacc
      961 aaggtgaagc tgctggaggg tgacaagctc ctggcacagg caggctctgg agagttccgg
     1021 acgctgcgga aaggcttctc cccgtaccac tcggagtccc agctctccag cctgccgccc
     1081 tcctaccagg atgcgctgca gaatggcccg gcctgcacgg ttcccgagct gtccccgccg
     1141 ccctcgggcg gctacagctc tgcgggacag aagcccgagg ctgtcgtaca cgcgatgaag
     1201 gtcctagagg tacatgagaa cctggaccgg cagctccagg acagctgtga ggaggacctg
     1261 agtgagaagg agaaggccat cgtccgagag atgtgcaacg tggtctggag aaaactggga
     1321 gatgccgcca gctccaagcc ctccatccgg cagcacctgt ctggaaacca gttcaaaggg
     1381 cctttgtagg gccgttcccc tgtggacgtg gactggccct gcctggggtc cccagacgtg
     1441 ggcaggctct cgcgccgagc cactgtcttc tttttccgtg gtgaattgta cataggacgc
     1501 tgcctgctgt ggcctggctg ccgggggtgc gactccattt cccacctctc acacaccagc
     1561 aaaccgggaa gactgttccc cgcagcagag cggcctggac aacctccttc ctgctctggg
     1621 gcccgggctc tgggctccac tggcgagagg ccgaggctgc tcagagatgt ccggcccagg
     1681 aaccgtgccg ggctgtgccc agccttggtg gaggggcacc tcatcaagac ctccatcccc
     1741 ggctgccacc tgtgctggac agaggccgct ggcagctgga ctgatgcatg gggcaccact
     1801 tctgacccgc ctgctgtggc ttgaacactg gctccataag cactgggtcc ccagagtcgt
     1861 ggacgaggaa actcaccggc ggcccttcct ctggccccag ggcccagcct ccccgctgcc
     1921 ggctctgctt gtttttagag ttcacgcccc tacccctggc cacacactct gcagtgtccc
     1981 ctcaccctgt cctaggctgt gccctatcct tttgggtccc tcctgcccag ggcccgaggc
     2041 acctccattt ctgtgcttcg catcatgggc tgtgtggagt ctctgggctg ggcctctctc
     2101 tctgcatggg tggcactggg ccgtggccgg gcctctgctc aggaacggtt gcccccggag
     2161 cttggacccc tcttggatca ctgtgggcgg agtcgcgtgg ccgtaggtga aggagttctg
     2221 ccctccttgg gagaagccct gcttggctct gttttcattt tcctgtgtga ccctcagcaa
     2281 gtcactcagc ctctctgggc ccctggtcgg gaaaggaggg ctcagaggtt cgaggccatc
     2341 ggctctagtc agcctgtgtc ctcactcaca gcacgcgagc caacggggtc ctcctgctgg
     2401 agaggcggct ggtgggtggg ctgggagggg cggaggcccc agctgagttc cgctgcctcg
     2461 ctgcctcctc tcggtggacg gtcacctccc ttcctgagcc tcagagtcct cccctgcaga
     2521 gtgggcagcc taaggtcctc cttgcagggc tctggggatc aagtaagacc ttcagtgtaa
     2581 aaggatcgtg tataaactgt aaagcgagac atgtaaattt taaagtttgt gtgcgagggc
     2641 agtgaggccc cgagggcgta agtgatcagt ggcgtatcac aaacgagatc ccagagcctg
     2701 gggggtgggg acaggccgct gttgtaacca gcccccgtcc acctgctgtc tgcagttcct
     2761 cccccatcgc tggactccag tggtcattag agctctgtgc gcgggcgagc gaagagcccg
     2821 agaggctggc ttggcatcgg acaggcctca ttcgaggctc gcgcgaggga tggggaccag
     2881 gttgagggga cggacgaggc tgccccgtcc ctctccccag cggggacgct gagccgtccc
     2941 caccgcctgt ctgccatcgg cacccttggg tcgacactca ggggaaaggc ccgcggccct
     3001 cactgtgccc gaggagtgct gaacgggtgc cggtgacggc gtcgggcacg gtcctcttgc
     3061 cctgggtgtt acaggaagct atgggctctc tggaaggagc tggtccctag gtcatgtgat
     3121 gagatccctg tcactagggg tgtgcacttg gagctgggtg aacatccttg gtcacgttct
     3181 gggtgacttc tgcccgggtg ggcagtcagc tggagggcag aggtcccctc ccgggtcttg
     3241 gagtccaaag aaccatggag cagctcgagg ggggtctggg tctcttgggt gggagccaca
     3301 tctgagaacc tgtgtgtcac gtctgggtca ggctagcttg gccaccgctg aaaataagca
     3361 ataagtcagg tgtcctggtg actgcaggtc tcctgcaaac tgacccaggg aagaacagcc
     3421 tccaagggac ctttccctgc cagagggagg tgaccctgtc ccctagtgct gcggtggcgt
     3481 ccggggagtg ggtcaggcgt tccctccaga agcagcctcc cgcccgccat gaaggcaggc
     3541 agcaccagcc ggtgccgaca tctccttcct gcccctgcct gtgtcccgga gccagcactg
     3601 catgggaatg gcttttgagg acagaatcgt acctgtgacg gcatctctta acgtaagctg
     3661 tcgaaaagcc tgcagcgcct ctgcacgccc cacgccggcc tggggcccag ctgcagcggg
     3721 agcccacggc tgggaggagg gtcctggggg ccagctcggg gtgagtccct gctctgccac
     3781 tagcagggag tgcgtagggg gtgacactgg cgaacctccc atctggagcc tcagctcaga
     3841 gagctcgtgg tggggtgtag ctgaacctga tgtcctttca taaacacact gtttctagcg
     3901 cccgaagccc cgtgtgccac ctgtgctgtg gcttcctttc ccgctgtgat ggatgtcgcc
     3961 cttccctcct catcccaggt ggccgagccc atcctggagt cggaatccac tgagcacatt
     4021 tttatccaga agttattagc cacacatcag tgttgttcaa agagaaaaaa gtgacctttt
     4081 cttttttctt gaaaacttga gaggaaacaa tacatactac tgactttttt tttttaagaa
     4141 acaaaggaaa tgcatgactg cagagcggga gaggtgtata tttttcataa cgtgggggaa
     4201 gtacttgtgc tgctctctgg ggatgggcgg accgcctggc ccctggcccc aggccggcag
     4261 ccgcgctcta tctaccttct gtcggatgtg accgcccgag tactggggcc gccccctccc
     4321 cagctctggg cagagctggg agccctggac tcctgtgccc gtttctacct tctattgaac
     4381 cactttgatt tggggagaga aaaaaaaatt agaacttttt gatagtgtgg taaaaacatt
     4441 gatttgaact attttagtaa aaggagtaac agagaagatt gtgatagtgt atactttgcg
     4501 ttagataaat aaaggctctt cgca
//
LOCUS       XM_032618063            4432 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 85C
            (CCDC85C), transcript variant X3, mRNA.
ACCESSION   XM_032618063
VERSION     XM_032618063.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4432
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4432
                     /gene="CCDC85C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746445"
     CDS             110..1297
                     /gene="CCDC85C"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 85C
                     isoform X3"
                     /protein_id="XP_032473954.1"
                     /db_xref="GeneID:116746445"
                     /translation="MAKPPAAAAAAAAAAAAAASSEELSQVPDEELLRWSKEELARRL
                     RRAEGEKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDD
                     DRQKGRKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLL
                     DEERAALAGGAGGGGGGGGGGAGSRSSIDSQASLSGPLAGGAAGAGTRDVGDGSSTSS
                     AGSGGSPDHHHHVPPPLLPPGPHKAPDGKAVATRRSLDDLSAPPHHRSIPNGLHDPSS
                     TYIRQLETKVKLLEGDKLLAQQAGSGEFRTLRKGFSPYHSESQLSSLPPSYQDALQNV
                     LEVHENLDRQLQDSCEEDLSEKEKAIVREMCNVVWRKLGDAASSKPSIRQHLSGNQFK
                     GPL"
     misc_feature    170..739
                     /gene="CCDC85C"
                     /note="CCDC85 family; Region: CCDC85; pfam10226"
                     /db_xref="CDD:463009"
ORIGIN      
        1 cgagcccctg gtcgcccccc gcccgcgggc ggaccggccc agcgcagccc cggcacgggg
       61 agcgccggcc gggcgagggc gcgggcgatg ccgcggtgac ggccccgcca tggcgaagcc
      121 cccggcggcg gcggcggcgg cggcggcggc ggcggcggcg gcggcgtcgt cggaggagct
      181 gagccaggtg ccggacgagg agctgctgcg ctggagcaag gaggagctgg cgcggcgcct
      241 gcggcgcgcc gagggcgaga aggtgggcct catgctggag cacggcggcc tgatgcgcga
      301 cgtgaaccgg cggctgcagc agcacctgct ggagatccgc ggcctcaagg acgtgaacca
      361 gcggttgcag gacgacaacc aggagctgcg cgagctctgc tgcttcctcg acgacgaccg
      421 gcagaagggg cgcaagctgg cgcgcgagtg gcagcgcttc gggcgccacg cggccggcgc
      481 cgtgtggcac gaggtggccc gctcgcagca gaagctgcgc gagctcgagg cgcgccagga
      541 ggccctgctg cgtgagaacc tggagctcaa ggagctggtg ctgctgctgg acgaggagcg
      601 cgcggcgctg gcggggggcg cgggcggcgg cggcggcggc ggcggtggtg gcgccggctc
      661 ccgtagctcc atcgacagcc aggccagcct gagcgggccg ctggcgggcg gcgcggccgg
      721 agcggggacc cgcgacgtgg gcgacggcag cagcacgtcg agcgccggca gcggcggcag
      781 ccccgaccac caccaccacg tcccgccccc gctgctgccc cccgggccgc acaaggcccc
      841 ggacggcaag gctgtcgcaa cgcgcaggtc cctggacgac ctgtcggcgc caccgcacca
      901 ccgaagcatc cccaacggcc tgcacgatcc ctcgtccacc tacatcaggc agctggagac
      961 caaggtgaag ctgctggagg gtgacaagct cctggcacag caggcaggct ctggagagtt
     1021 ccggacgctg cggaaaggct tctccccgta ccactcggag tcccagctct ccagcctgcc
     1081 gccctcctac caggatgcgc tgcagaatgt cctagaggta catgagaacc tggaccggca
     1141 gctccaggac agctgtgagg aggacctgag tgagaaggag aaggccatcg tccgagagat
     1201 gtgcaacgtg gtctggagaa aactgggaga tgccgccagc tccaagccct ccatccggca
     1261 gcacctgtct ggaaaccagt tcaaagggcc tttgtagggc cgttcccctg tggacgtgga
     1321 ctggccctgc ctggggtccc cagacgtggg caggctctcg cgccgagcca ctgtcttctt
     1381 tttccgtggt gaattgtaca taggacgctg cctgctgtgg cctggctgcc gggggtgcga
     1441 ctccatttcc cacctctcac acaccagcaa accgggaaga ctgttccccg cagcagagcg
     1501 gcctggacaa cctccttcct gctctggggc ccgggctctg ggctccactg gcgagaggcc
     1561 gaggctgctc agagatgtcc ggcccaggaa ccgtgccggg ctgtgcccag ccttggtgga
     1621 ggggcacctc atcaagacct ccatccccgg ctgccacctg tgctggacag aggccgctgg
     1681 cagctggact gatgcatggg gcaccacttc tgacccgcct gctgtggctt gaacactggc
     1741 tccataagca ctgggtcccc agagtcgtgg acgaggaaac tcaccggcgg cccttcctct
     1801 ggccccaggg cccagcctcc ccgctgccgg ctctgcttgt ttttagagtt cacgccccta
     1861 cccctggcca cacactctgc agtgtcccct caccctgtcc taggctgtgc cctatccttt
     1921 tgggtccctc ctgcccaggg cccgaggcac ctccatttct gtgcttcgca tcatgggctg
     1981 tgtggagtct ctgggctggg cctctctctc tgcatgggtg gcactgggcc gtggccgggc
     2041 ctctgctcag gaacggttgc ccccggagct tggacccctc ttggatcact gtgggcggag
     2101 tcgcgtggcc gtaggtgaag gagttctgcc ctccttggga gaagccctgc ttggctctgt
     2161 tttcattttc ctgtgtgacc ctcagcaagt cactcagcct ctctgggccc ctggtcggga
     2221 aaggagggct cagaggttcg aggccatcgg ctctagtcag cctgtgtcct cactcacagc
     2281 acgcgagcca acggggtcct cctgctggag aggcggctgg tgggtgggct gggaggggcg
     2341 gaggccccag ctgagttccg ctgcctcgct gcctcctctc ggtggacggt cacctccctt
     2401 cctgagcctc agagtcctcc cctgcagagt gggcagccta aggtcctcct tgcagggctc
     2461 tggggatcaa gtaagacctt cagtgtaaaa ggatcgtgta taaactgtaa agcgagacat
     2521 gtaaatttta aagtttgtgt gcgagggcag tgaggccccg agggcgtaag tgatcagtgg
     2581 cgtatcacaa acgagatccc agagcctggg gggtggggac aggccgctgt tgtaaccagc
     2641 ccccgtccac ctgctgtctg cagttcctcc cccatcgctg gactccagtg gtcattagag
     2701 ctctgtgcgc gggcgagcga agagcccgag aggctggctt ggcatcggac aggcctcatt
     2761 cgaggctcgc gcgagggatg gggaccaggt tgaggggacg gacgaggctg ccccgtccct
     2821 ctccccagcg gggacgctga gccgtcccca ccgcctgtct gccatcggca cccttgggtc
     2881 gacactcagg ggaaaggccc gcggccctca ctgtgcccga ggagtgctga acgggtgccg
     2941 gtgacggcgt cgggcacggt cctcttgccc tgggtgttac aggaagctat gggctctctg
     3001 gaaggagctg gtccctaggt catgtgatga gatccctgtc actaggggtg tgcacttgga
     3061 gctgggtgaa catccttggt cacgttctgg gtgacttctg cccgggtggg cagtcagctg
     3121 gagggcagag gtcccctccc gggtcttgga gtccaaagaa ccatggagca gctcgagggg
     3181 ggtctgggtc tcttgggtgg gagccacatc tgagaacctg tgtgtcacgt ctgggtcagg
     3241 ctagcttggc caccgctgaa aataagcaat aagtcaggtg tcctggtgac tgcaggtctc
     3301 ctgcaaactg acccagggaa gaacagcctc caagggacct ttccctgcca gagggaggtg
     3361 accctgtccc ctagtgctgc ggtggcgtcc ggggagtggg tcaggcgttc cctccagaag
     3421 cagcctcccg cccgccatga aggcaggcag caccagccgg tgccgacatc tccttcctgc
     3481 ccctgcctgt gtcccggagc cagcactgca tgggaatggc ttttgaggac agaatcgtac
     3541 ctgtgacggc atctcttaac gtaagctgtc gaaaagcctg cagcgcctct gcacgcccca
     3601 cgccggcctg gggcccagct gcagcgggag cccacggctg ggaggagggt cctgggggcc
     3661 agctcggggt gagtccctgc tctgccacta gcagggagtg cgtagggggt gacactggcg
     3721 aacctcccat ctggagcctc agctcagaga gctcgtggtg gggtgtagct gaacctgatg
     3781 tcctttcata aacacactgt ttctagcgcc cgaagccccg tgtgccacct gtgctgtggc
     3841 ttcctttccc gctgtgatgg atgtcgccct tccctcctca tcccaggtgg ccgagcccat
     3901 cctggagtcg gaatccactg agcacatttt tatccagaag ttattagcca cacatcagtg
     3961 ttgttcaaag agaaaaaagt gaccttttct tttttcttga aaacttgaga ggaaacaata
     4021 catactactg actttttttt tttaagaaac aaaggaaatg catgactgca gagcgggaga
     4081 ggtgtatatt tttcataacg tgggggaagt acttgtgctg ctctctgggg atgggcggac
     4141 cgcctggccc ctggccccag gccggcagcc gcgctctatc taccttctgt cggatgtgac
     4201 cgcccgagta ctggggccgc cccctcccca gctctgggca gagctgggag ccctggactc
     4261 ctgtgcccgt ttctaccttc tattgaacca ctttgatttg gggagagaaa aaaaaattag
     4321 aactttttga tagtgtggta aaaacattga tttgaactat tttagtaaaa ggagtaacag
     4381 agaagattgt gatagtgtat actttgcgtt agataaataa aggctcttcg ca
//
LOCUS       XM_032618075             624 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 60S ribosomal protein L17-like
            (LOC116746453), mRNA.
ACCESSION   XM_032618075
VERSION     XM_032618075.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..624
                     /gene="LOC116746453"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, 44 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746453"
     CDS             36..590
                     /gene="LOC116746453"
                     /codon_start=1
                     /product="60S ribosomal protein L17-like"
                     /protein_id="XP_032473966.1"
                     /db_xref="GeneID:116746453"
                     /translation="MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKA
                     TKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNA
                     ELKGLDVDSLVLEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKP
                     EEEVAQKKKISQKKLKKQKLMARE"
     misc_feature    36..530
                     /gene="LOC116746453"
                     /note="60S ribosomal protein L17; Provisional; Region:
                     PTZ00178"
                     /db_xref="CDD:240306"
     misc_feature    order(78..83,147..155,159..164,168..173,330..347,369..386,
                     480..485)
                     /gene="LOC116746453"
                     /note="putative translocon binding site [active]"
                     /db_xref="CDD:238205"
     misc_feature    order(87..89,93..95,102..104,108..116,123..125,135..137,
                     144..146,324..326,336..338,345..347,381..383,387..395,
                     399..401,408..410,444..461)
                     /gene="LOC116746453"
                     /note="protein-rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238205"
ORIGIN      
        1 cttttccggt cagcggcctg aggtgacctc taaaaatggt tcgctattca cttgacccag
       61 aaaatcccac aaaatcatgc aagtcgagag gttcaaatct tcgtgttcac tttaagaaca
      121 ctcgtgaaac agcgcaggcc attaagggta tgcatatccg aaaagctact aagtatctga
      181 aggatgtcac tttaaagaag cagtgtgtgc cattccgtcg ctacaatggt ggagttggta
      241 ggtgtgccca ggccaaacag tggggctgga cgcagggtcg gtggcccaaa aaaagtgctg
      301 aatttttact gcatatgctc aaaaatgcag agagtaatgc tgaacttaag ggcttagatg
      361 tagattctct ggtccttgag cacatccagg tgaacaaagc ccccaagatg cggcgcagga
      421 cttacagagc tcatggtcgg atcaacccat acatgagctc tccgtgccac attgagatga
      481 tccttactga aaaagaacag attgttccta aaccagaaga ggaggttgcc cagaagaaaa
      541 agatatccca gaagaaattg aagaaacaaa aacttatggc ccgggaataa atgctgcaaa
      601 aaataaatgc aaataaaagt aaaa
//
LOCUS       XM_032618095            5255 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus EH domain containing 4 (EHD4), mRNA.
ACCESSION   XM_032618095
VERSION     XM_032618095.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5255
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5255
                     /gene="EHD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 37 long SRA reads, 35
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746464"
     CDS             110..1735
                     /gene="EHD4"
                     /codon_start=1
                     /product="EH domain-containing protein 4"
                     /protein_id="XP_032473986.1"
                     /db_xref="GeneID:116746464"
                     /translation="MFSWLGRQAGGRERAGGADAVQTVTGGLRSLYLRKVLPLEEAYR
                     FHEFHSPALEDADFENKPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIA
                     VMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGI
                     LSGEKQRISRGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIR
                     VVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEA
                     EAQDLFRDIQSLPQKAAVRKLNDLIKRARLAKVHAYIISHLKKEMPSVFGKENKKREL
                     ISRLPEIYSQLQREYQISAGDFPEVKAMQEQLESYDFTKFHSLKPKLIEAVDNMLSNK
                     ISSLMSLISQEETSMPTQLVQGGAFDGTAEGPFNQGYGEGAKEGADEEEWVVAKDKPV
                     YDELFYTLSPINGKISGVNAKKEMVTSKLPNSVLGKIWKLADCDCDGMLDEEEFALAK
                     HLIKIKLDGYELPNSLPPHLVPPSHRKSLPNAD"
     misc_feature    188..286
                     /gene="EHD4"
                     /note="N-terminal EH-domain containing protein; Region:
                     EHD_N; pfam16880"
                     /db_xref="CDD:465295"
     misc_feature    296..1018
                     /gene="EHD4"
                     /note="Eps15 homology domain (EHD), C-terminal domain;
                     Region: EHD; cd09913"
                     /db_xref="CDD:206740"
     misc_feature    311..334
                     /gene="EHD4"
                     /note="G1 box; other site"
                     /db_xref="CDD:206740"
     misc_feature    order(326..337,575..577,776..778,782..784,884..892)
                     /gene="EHD4"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206740"
     misc_feature    398..400
                     /gene="EHD4"
                     /note="G2 box; other site"
                     /db_xref="CDD:206740"
     misc_feature    410..418
                     /gene="EHD4"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206740"
     misc_feature    575..586
                     /gene="EHD4"
                     /note="G3 box; other site"
                     /db_xref="CDD:206740"
     misc_feature    order(581..586,665..670)
                     /gene="EHD4"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206740"
     misc_feature    773..784
                     /gene="EHD4"
                     /note="G4 box; other site"
                     /db_xref="CDD:206740"
     misc_feature    884..892
                     /gene="EHD4"
                     /note="G5 box; other site"
                     /db_xref="CDD:206740"
     misc_feature    983..1300
                     /gene="EHD4"
                     /note="Domain of unknown function (DUF5600); Region:
                     DUF5600; pfam18150"
                     /db_xref="CDD:465667"
     misc_feature    1430..1711
                     /gene="EHD4"
                     /note="Eps15 homology domain; Region: EH; smart00027"
                     /db_xref="CDD:197477"
ORIGIN      
        1 tgggcagctc agtgcgagct ggggagggtc gagtccggag tggggacagt tcgctggacc
       61 tgcactgaga gggcgagcgc ggggtgcgga cgggcggacc ggcggcagga tgtttagctg
      121 gttggggcgg caggcgggcg ggcgcgaacg agcgggcggc gcggacgcgg tgcagacggt
      181 gacgggcggc ctgcgctcgc tctacctgcg caaggtgctg ccgctggagg aggcgtaccg
      241 cttccacgag ttccactcgc ccgcgctgga ggacgccgac tttgagaaca agcccatgat
      301 cttgctggtg ggccagtaca gcacgggcaa gaccacgttc atcagatact tactggagca
      361 agatttccca ggcatgagga ttggtccaga gcccaccacc gactccttca tcgccgtgat
      421 gtatggggag actgagggca gcaccccagg gaacgcttta gtcgtggacc ccaagaagcc
      481 atttcgaaag cttagtcgct ttggaaatgc tttcctcaat cgattcatgt gctcccagct
      541 gcccaatcag gtcctgaaaa gcatcagcat catcgacagc cccggcatcc tgtctgggga
      601 gaagcagcgc atcagccgag ggtatgactt ctgccaggtc ctgcagtggt ttgctgagcg
      661 ggtggacagg atcatcctgc tcttcgatgc gcacaaactg gacatctcag acgagttctc
      721 ggaggccatc aaggccttcc ggggccagga cgacaagatc cgcgtggtgc tgaacaaggc
      781 tgaccaagtg gacacgcagc agctgatgcg cgtctacggg gccctcatgt ggtccctggg
      841 caaggtcatc aacactcccg aggtgctgcg cgtctacatc ggctccttct gggcgcagcc
      901 cctgcagaac actgacaacc gccggctctt cgaggctgaa gcccaggacc tgttcagaga
      961 catccagagc cttcctcaga aggcggcggt gcgcaaactc aatgacctca tcaagcgagc
     1021 gaggctggcc aaggtacatg cctacatcat cagccacctg aagaaggaga tgccaagtgt
     1081 atttggaaaa gaaaacaaga agagagagct tatcagcagg ttgccagaaa tctacagtca
     1141 actgcagcga gaataccaga tttctgcagg ggacttcccc gaggtcaagg caatgcagga
     1201 acagcttgag agctatgact tcaccaaatt ccactcgctg aagcccaagc tgatcgaggc
     1261 tgtggacaac atgctgagca acaagatctc gtccctgatg agcctcatca gccaggagga
     1321 gacgagcatg cccacgcagc tggtgcaggg cggtgccttc gacggcaccg ccgagggccc
     1381 cttcaaccag ggctacgggg agggcgccaa ggagggcgcc gatgaggagg agtgggttgt
     1441 ggccaaagac aagcctgtct acgatgagct cttctacacc ctgtcgccca tcaatggcaa
     1501 gatatcgggc gtcaacgcca agaaggagat ggtgacctcc aagctgccca acagcgtcct
     1561 gggcaagatc tggaagctgg ccgactgtga ctgcgacggc atgctggacg aggaggaatt
     1621 cgcactggcc aagcacctca tcaagatcaa gctcgatggc tacgagctgc ccaacagcct
     1681 gcccccgcac ctcgtgccac cctcccacag gaaatccttg ccgaatgccg actgaggggc
     1741 aagccgcaca cagcgagggc ggtgtggggc tagaattggg gggcctgggc cagaggccca
     1801 cactgccact gactcactga gcgaccctgg gcgagacact gccctctctg tgcctcggtt
     1861 tccccatctg tagaccgggg agggcagaca ctggacacta gatgagatcc tttcacctta
     1921 aaattcccag agtttctaat aaaatgttgg ggggacgggg tggatacagg gatggaagcg
     1981 ttgagaagaa aggaaaatcg tccaaggagt cctccaaagc ctagagaagc ccagatgtgg
     2041 aatcccagga gccagggggt gtcagctgga ggctctgctg ggcttcactg gactgtccat
     2101 cattttgaac ctgcctgtcc ctcagagagc accgggaagc agcaaagacc agcttattta
     2161 ttttgtctct tgctctattt ggagtgaaaa aaaaaaaaca gctgagaagg tttctgttct
     2221 ctccaaactg tctaccaaag agtagactgc tgtcccagct ttgagaggaa gacgcaccat
     2281 ttctgtgtgt ccccgtccct tctgtaggcc cgcagagctc gcggccaggc cgcagggagc
     2341 atccatccca gcgcctgctg gccggccctc ccagggctcc cccaaccttg gggccttccc
     2401 agcaaagttg tatttggtta gaaatttgga actcacaacc tttattaacc cctggcaaga
     2461 gttctagtat tcatttcaag tcacgttgaa atctgaagat tagctttact tgtctggcaa
     2521 caggttgtag caaagtttat catatttaaa ctagagtaag aaaagcggtg gttctcccca
     2581 gtcttcagtt agcgtggtta cacgtcccca aggctccttg gtcaatggca ggatttaaat
     2641 ccagaaaaaa catgaattgg tgcgtgcagt gtcctggccc tgtggccaca gaggggatgg
     2701 ggggccagcc caaggtcagt ctactagcgt tagacacttt ttataaaaaa taggcatttt
     2761 tattatgact agttttttaa atatagtttc tgtataaagg ataaaggcct ttatacagaa
     2821 acaagataca atctttcata taaagccttt tcttcaaaag actgtgtggt tcataccatg
     2881 aatgcctcac gaggtaggat ctgggccctt acctgtacat cagttcctga tgttccctcc
     2941 ctgggtgccc tgggtgaacc tctctggacc acttgcccaa atgcctgtgt ccagtggagg
     3001 tcaccctccc aactgtgttt gcttcagctg ggggatgcgg gtgcctttca ccatcattta
     3061 tgcaataaga gagacatgat atttcatcac tattgtgatg gctgcatagc ctgggaccct
     3121 gctggcacca aaaatgaatg aaatccaaac agtcacacct aagtctccca aaacactcgt
     3181 ttttttgttt gtttgtttgt ttctggtgtc acttgtgaca tcaggggcag aacagcagac
     3241 ttaagaaaat gtttagagaa ggatttatcc agatgccagc cctcacactc cctagcttac
     3301 tttctacata atttagtttt aagagaagta aatacataac atggttttag tcttagtgag
     3361 tacttttaaa ttaattagac acatagaaaa gagacatttg taattccagt agatctgtga
     3421 atgcacgagg accacacagg tgtgtaagca cagtggatcc agcagagggc aagattgaga
     3481 gaggaggaga gagttcattt gccgaaaggt atagagatgc caaggttaga ttatttccat
     3541 tcacaatcat cttgcttctt taactcagct cagttgtcat atataaagat aaatatatac
     3601 acgtatgtca caagagtatg taccttggcc acttgttaat gtgtatatat gtacatgtgg
     3661 gcaagttttg tctatatatg gatgtagagg aatactgttt cagaggagcc acagaggagg
     3721 tttctggttc tacgtggatg gaagcacctc atgggtgatc cccaccccac ccccatgacc
     3781 tctggtgaga agacatctgg cagctgaatg ctgagaaaaa aggaagaaaa aggaagtcac
     3841 atgtccattt ttctcaatat cttctcttaa aacctgaagt cacccaccca tccagtgttt
     3901 tgattggaaa gaaaaacact gaaagacgtt agggatggcg gccaagcaag gacccatatc
     3961 gtcccgggac ccgcacagag ttcctcaagt ctgtgtccaa aacacccgtt atcccctgac
     4021 cccatgcagc agggccggga acacggagcc cttgggatct gggcacctgg accgacctta
     4081 ttgtcctccc tgcaccaccc cactgtccaa gtaccccctc tgcagagtgc tcacggatgg
     4141 ggcagggggc gtggaagtag gtaaactcca gaactctgaa actatcttca tgctttccat
     4201 gatttcacag aagaaaacct aagaatcttg agtctgtttt ctgtacagca cacggtatcg
     4261 cacaacacaa acttctgcag tcttgagttt agggggaaaa aaatgaaaac ttctgcctac
     4321 tcctcccgaa gtcgacttcc agactgtgag cctgctggtg aggccttcct gagcccgtct
     4381 gtacagaagc gttgcactga gacctgccga gatcccccag ctctgtggcc acacgctgat
     4441 gtccaacccg cttggcatcc tacatggatt ctttcctcgt cacacacaca cttggatgac
     4501 ccaggttggg gctgctcttc tgtgggaagg gccaggcttt cagttggctt tcacttctcc
     4561 agggctggag tggcttctcc agaacacttg tcatcatgca gcaataaagc ctggattggg
     4621 ggctgtgact cctcccacag aaccgtgggc cttaaggagt tggattctta ttccatctca
     4681 tgggactggt gtccaggtgg gtcagagagc atgtgacgag aagccaaatg cctcgtgctc
     4741 tcccccaact gctgcccgcc ttacaaaccc gcaggagagg cttcagcaga gccctggccc
     4801 cactgtcctg gccacggtcc tttgctatgt ctgctgggtc ttggggggcc gcccctgcac
     4861 cacactggga atgtcttgta ctggagcctg ccgcctagga tggggtttaa ccaccagagt
     4921 catggcctga cagccaccac cagaaccttc ccgctttatg gctacattcc ttgatgccca
     4981 gaacaatacc ctggacagat tcccttggag ataaggaaag catttaagga ggcactgttt
     5041 atttcttcca tggaatgtgg caaataactt tcttaggaca gataaccact gagtttttcc
     5101 caggtaaaca tgggcagaat ctaagagtat accaggtgac gtgtcaatta gccaatgcat
     5161 ttaatacaca atgcttctgt tttttttgta atcttgttta gaaatgtcaa aaaaagaccc
     5221 agtctactga tcaataaact tctgaaaaaa aatca
//
LOCUS       XM_032618108            7391 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus abhydrolase domain containing 2,
            acylglycerol lipase (ABHD2), transcript variant X1, mRNA.
ACCESSION   XM_032618108
VERSION     XM_032618108.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7391
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7391
                     /gene="ABHD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 47 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746471"
     CDS             134..1456
                     /gene="ABHD2"
                     /codon_start=1
                     /product="monoacylglycerol lipase ABHD2 isoform X1"
                     /protein_id="XP_032473999.1"
                     /db_xref="GeneID:116746471"
                     /translation="MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPEL
                     YFQDSGLSCFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFIT
                     MSDGATSTFDLFEPLAEHCVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVL
                     NHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLG
                     ETQANQEKVLCCVSVCQGYSALRAQETFMQWDQCRRFYNFLMADNMKKIILSHRQALF
                     GDHVKKPQSLEDTDLSRLYTATSLMQIDDNVMSVVLSFSFVCVCVCPRKFHGYNSLKE
                     YYEEESCMRYLHRIYVPLMLVNAADDPLVHESLLTIPKSLSEKRENVMFVLPLHGGHL
                     GFFEGSVLFPEPLTWMDKLVVEYANAICQWERNKSQCSDTEQVEADLE"
     misc_feature    314..1390
                     /gene="ABHD2"
                     /note="Predicted hydrolase of the alpha/beta-hydrolase
                     fold [General function prediction only]; Region: YheT;
                     COG0429"
                     /db_xref="CDD:440198"
ORIGIN      
        1 gccggtagcg gcgggagctg cactggccag gggttccggc tgcatttcct tgagcgccgg
       61 cggcagctgc tgagctgcgg gaacctgact gggggcgaac tgggccgcag tagtcaacca
      121 caagcagatc aagatgaatg ccatgctgga gacccccgag ctcccggccg tgtttgacgg
      181 ggtgaagctg gccgcagtgg ctgctgtgct gtatgtgatc gtccggtgtt tgaacctgaa
      241 gagccccacg gccccgcctg aactctactt ccaggactcg gggctctcat gcttcctgct
      301 caagtcctgt cctcttctga ccaaagaata tattccacct ttgatctggg ggaaaagtgg
      361 acacatccaa acagccttgt atgggaagat gggaagggtg aggtcaccac acccatatgg
      421 gcaccggaag ttcatcacca tgtctgacgg agccacttca acctttgacc tcttcgagcc
      481 cttggctgag cactgtgtgg gagatgatgt taccatggtc atctgccctg gaattgccaa
      541 tcacagtgag aagcagtaca tccgcacctt tgttgactac gcccagaaaa atggctatcg
      601 gtgtgccgtg ctgaaccacc tgggcgcctt gcccaacatt gaactgacct cgccacgcat
      661 gttcacctac ggctgcacct gggaatttgg agccatggta aactacatca agaagacata
      721 tcccctgacc cagctggtgg tcgtgggctt tagcctgggc ggtaacatcg tgtgtaaata
      781 cttgggagag acccaggcca accaagaaaa ggttctgtgc tgcgtcagcg tgtgccaggg
      841 ctacagtgca ctgagggccc aggaaacctt catgcagtgg gatcagtgcc ggcgcttcta
      901 caacttcctc atggccgaca acatgaagaa aattatcctc tcgcacaggc aagctctttt
      961 tggagaccat gttaagaaac ctcagagcct ggaggacacg gacttgagcc gcctctacac
     1021 agccacatcc ctgatgcaga tcgacgacaa tgtgatgagt gttgttttgt ctttttcctt
     1081 tgtgtgtgtg tgtgtgtgtc ccaggaagtt tcatggctat aactccctga aggaatatta
     1141 cgaggaagaa agctgcatga ggtacctgca caggatttat gtacctctca tgttggtgaa
     1201 tgcagctgat gaccccttgg tgcatgaaag tcttctaacc attccaaaat ctctttcaga
     1261 gaaacgggag aacgtgatgt ttgtgctgcc cctgcacggg ggccacctgg gcttctttga
     1321 ggggtccgtg ctgttccccg agcccctgac atggatggat aagctggtgg tggagtacgc
     1381 caatgccatt tgccaatggg aacgtaacaa gtcgcagtgc tctgacacgg aacaggtgga
     1441 ggccgacctg gagtgaggca gcccccggac tctggtgcgc gccagctgcc ctggtcaccg
     1501 gctgtttcag gtctcccatc tccctcagtg acctggatct gacctcacac catcaacgga
     1561 gaccacccac tagacacacc ggacttgaag taggtggccg tccctgggag ctccaggcta
     1621 tttttgtgct tagttactgg ttttctccac tgcattgtta gccatggtga caagcgacgg
     1681 ggttttcacc ctcgtgtccg gtgtcagcat ctgattgctt tcaagccaat tacatctagt
     1741 ttccctatta aaaatgtgtc tgaacagcag ttttgctttg ccaatcagaa ggcttttccc
     1801 caagagcagt gaaggatgta tgttattttg tggtggtgta tgtgtcctga cgtagaccct
     1861 aaaaagagcc aatgctgtag atgcagctca gcttgggagc cggggaccct gggcctccca
     1921 ggccaagact gtagcctcct acgtggcaaa gaaaattccc ttgactcaca aaccaagttt
     1981 ctccctcact gtcctctaag acagttttcc cacaggttgc tgttgatgag agttacctgg
     2041 gacgcttgtt accaattcag cctcctgggt ccctcccctt ggagaagctg tttcggtggg
     2101 tctgggaagg ggcctgggga ttctaatttt tgacaggtgc cccaggtgat tctcctcacc
     2161 aggcacattt gagaagcacg attgtgcaga gcctttaaat tagaaacatc tcggtagttt
     2221 gtgttgttga aattcgtagt cagaggtatc tcttagatcc caggagcctc caaagctgca
     2281 aggcctatct tgtacggctg ccctggtgcg atcgctatgt gatgtctcag aaagggcttg
     2341 tgctgggggt gaagacttct cgccatgcct gactctgcct ctcactggct atatgaccct
     2401 ggaagagtcc ctttgaactt ttgtttcttc acctgtaaaa tgggggactt gggccaggta
     2461 gattgccgat accactacca gttctaaagt tcaatgacaa actcagttta ctgaggtttg
     2521 agagaacacc tctccagggg agcctgagag ctattctaag catgtagacg tcatttgcct
     2581 ttccttcttt ttttttatgt ccctcatttc atataaagag ggggtttttt ggtgtttttt
     2641 ttttttaaac cctcagttat aattttattt ttttaaccca ggtctttcta actctgactt
     2701 ttgataccaa acaattcaaa agttggatct gagtttggag aaatatcttt ccaactgaag
     2761 agggtgtgat tttgaaacca gattttgtaa tgtaatagct catatttgta gcgtgttgga
     2821 cagatctttc cagagtgtta tcttctcaga tgaaaagtca ctctacattt caagtactac
     2881 tttcctccaa tcctgtggta cttgaatatc taaaaaccct gcactttgaa aaatcagcag
     2941 ttgctatctg gaactaaaca gaattacaag tgaaatgacc tatagatact ttaaaaaaaa
     3001 aaaattcctg gcttcctctc ctttgctata ggacagacag gaatgtaaat agtgggtctg
     3061 tatgtggatg tttaaggggt aaagggagcc acctgagggc ctggatgcag accctcatgg
     3121 ccgcaggtga atgtagtttg ggcatcggtc caagtcatgt gacagtaatg tctgtaacct
     3181 gaagaagttg ttttctgaca atcaccaggt catcctaaat aataacatca aaaacagccg
     3241 tacctgaaga gactgagact tctatggtct cgactttgct tcagtacaat ttctcacaca
     3301 caccaaattc atcattgtga ctttcccccc aagttgttac ttttcaagtg cttttctttt
     3361 tcatgttctt ttagtacaaa ttggcacttt atcatctacc cctcaatttc gaagctagtc
     3421 tctcccctct gttacttttc cctccaacca acaaccacag ctataatcta gaaggttcat
     3481 ggtcatatat cctgccacaa ccttcacgtc tcaagacctt tttttgtgaa attagatgaa
     3541 tgaagcaata acttaatggg gttgatcacc atcccaggaa gcaagaggct ccttttcatt
     3601 tgccttaggt cacatccttt gatctgttct gacaaagcag tggccaggta ccagctccat
     3661 tcaggaggag aaaacagtcc tgttgtcgca cacttggcag ggatgggggc agaagtcctc
     3721 ggagcctggt gtgcacggca gttctggtgg cccacggagg agaggcaggg ctcggggcac
     3781 agcctttgtt gccacataac cggaatttac cccacgggac tgtggagact gcctcccagc
     3841 tgaaatcttt ttagtgtgtg actctgaatg gcacttacat tccattttgg ctcacatgaa
     3901 atcaactgaa ggcctctgtt caagctccag gctctcaggc atggaaataa cagtgtaact
     3961 gtggctatct tacaggaaaa ttcttgtttg tccctgaatg agagcacaga ggcattgaat
     4021 ttacagagat gcgagctcgc ctaataaaca aggaagcagc attttatatg taggtcagct
     4081 ttttccttcc tccagctttc cttgcttttc cttcgttcct gatgataatg tgagggctct
     4141 tgctactgag gtcctcttgg gctaaaacaa ggcagaattt tcaaaaagta tttgaatatt
     4201 atattttaaa atcaggttaa aatacaataa aatcaggtta aggatataaa ttgcggaaac
     4261 ctagacagtt ctatcgcagg aagaacatgt taaaaaccaa gcaggggctt ccctggtggc
     4321 gcagtggatg agagtccgcc tgccgatgca gaggacacag gttcgtgccc cggtccggga
     4381 ggatcccaca tgccgcggag cggctgggcc cgtgagccat ggccgctggg cttgtgcgtc
     4441 cggagcctgt gctccacaac gggagaggcc acaacagtga gaggcccgcg cacagcaaaa
     4501 aaaaaaaaaa aaaaaaaacc aagcaggttt ttaacagctc tccgggtggt tctccctgcc
     4561 tctaaacagt ttaaagacag tgatgaagat cccagtcaag tcaggattat ctgacttgaa
     4621 aaaatggtct caagtctcct tgatgcattt atgttagtag ggagtttaac agacttgagg
     4681 aaaacctctt accttcccgc ccgtgtgttt gcaccagtga ttccagagca gaaggaaggc
     4741 agaaagttgt ttgttgtcac tatattcttt gaacctcccc gcagcgtttt acacgtgaga
     4801 gtgggaatat acctgcaagg ggagcatccc tttcttgaca tggtgttagg gaaccagggt
     4861 ttgggagact tggattcttg tcctgtctct aatttacatt ggattgtggg caatcacttc
     4921 acctctccga gctccaatta cctcatctta gaccatctct aagtctactt aatctactta
     4981 cacatcattt gccagaacat tcccgctggc cttcttacag ccattgcgag tggaaacaga
     5041 taagtcaaga cttcaggctg atcttgaggg gacttggaga gagggagcta ctgcattcag
     5101 cctttgctgg tgaagaccct tgattttgcc caaagccctg tgtctcttac tggcttctct
     5161 tcagagcctc cattgtcatc tcaatattct ttctgtactg agggtggtct tatgactggg
     5221 acaggtgctg accattggaa cgaggtgaat gtccccatcc ttctgtgtga ctcgggcaag
     5281 ctttgagagt tcccagggca gaaaccctgc ctgctcagac tttcattcta aaactacagt
     5341 cttcattaaa gctgaacttt ctgggtagct gagcttatat gcctggcatc tgaatgagag
     5401 ctctctttgt cactgtgtgg cttgagatcc gttttgccag ctccggggaa acaatacatg
     5461 tgttcttgtt tgtgtttgcc gggcaagcag atgtctgagc tgtgagaggc ttttcttttc
     5521 ccgtggcatt gcttctgact tagcactaaa gtgaagatca ctgaaacatc acgttgagtt
     5581 gaaaactcag gtctttgtcg tctaaggcag gacaggagag ttattaagaa gcatttcact
     5641 gcagcatcca ctcacaatat catctggaat tgttctcttt gcccagaaag ccttaacttg
     5701 cctctagaat atcccctggt ggtacaacac tatagtggct ttggaattca aattattctg
     5761 ctgcagaagt ctgaagcaaa gctgccacaa aaccagaaaa tgtctccatg tggcctgtac
     5821 gctccttatt acattaggtg cccccacccc ttgacaataa gagcaatcca gaactggcca
     5881 aacacctcat ctctgatgcc tttcttcctt cttggcctca ctctgttgtt caaagccact
     5941 ttggatgctt caaaaaacca tgaaaagtgg cctgcctttg gcatttagag gccaagcaat
     6001 tgagggaaag gttttcttct cccccctgtt accaaagcag agggaagtgc cccctcttca
     6061 taaactagga ttgcttttgc caaattctat ttgaagggga acaggcccgt actcgcagtg
     6121 agaactggga tgctatccaa agctacagct gcttcctctt gcctatgtca ctgctgcaac
     6181 cgcctcggac gctgtagccc aggcatcccc ccgaagtggc ccttggaagc aggctgcaga
     6241 gcccagctcg ccagccattc tcagacccca gacggtagac agctgcccct tttgaaggag
     6301 tcagccccct acacacacca cgttttctga accttttttc ctagcatgta ttgtgggtaa
     6361 aacattcacc tatctctaat gaataagctg aagttaattt ccaaccagtg aattaagtcc
     6421 tttaacttga ctcctgtcag ttagtaataa aacctataac ctgccgtctt cccgttctgg
     6481 tcctcattag ccaagaaatc tatcgccgta agttggggac agtccacgta tagcacctgc
     6541 agaaatacct ttcatctcaa taggcattct ccttccagac cacccacatg gagcagccaa
     6601 cagtcacgta gaataattgc tgagccctca gtcccagcgc cagccactcc ctcccagtgg
     6661 gtggaccgag ttcctgggtg tgggagttag gcttggtttg gtttttgctt tggcctcttt
     6721 agttttccta aagcacaagt ccatgtagaa tcctgtcacc tctccacacc agtttcaggt
     6781 gatctgggtc tctcccactg cctcaggaag accttcactg tacctgagct tttgacttct
     6841 gccactgcag ctgccttagc gacaccaggg gctgggggcg tggagggggg agccagtttg
     6901 catctccccc tttcctggtt agacttccat gaaccccatg tttctgttgg cagatctgct
     6961 tccagactga tttttgagaa ccatcacttt cacattccta atttttgttt gttttgtttg
     7021 atttcttttt ttttggactt tctgaaactt caaatgctgc cctgaaaata atgtattttt
     7081 gagtttgtgt tctgaaagcc tccgtgctgg tggattgggg gtgggggagg cagaatacag
     7141 gatcctccag cactgaggtg tttaagattt gcaactagca atgcaatttt ttctaaatat
     7201 gaggatattt acctttatta agaaattaaa cagtggtgtc cttgatcatt ttatgttctc
     7261 atattacttt tggttctgtt ttgattctgt gtggtggtaa acaaagatca ttacaaacaa
     7321 aaactgtaat tttgttatct ttgattcaat ggaatttctt tacttaaaaa aataaaaggc
     7381 taaaaatgtg g
//
LOCUS       XM_032618113            7346 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus abhydrolase domain containing 2,
            acylglycerol lipase (ABHD2), transcript variant X2, mRNA.
ACCESSION   XM_032618113
VERSION     XM_032618113.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7346
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7346
                     /gene="ABHD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 57 long SRA reads, 15 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746471"
     CDS             134..1411
                     /gene="ABHD2"
                     /codon_start=1
                     /product="monoacylglycerol lipase ABHD2 isoform X2"
                     /protein_id="XP_032474004.1"
                     /db_xref="GeneID:116746471"
                     /translation="MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPEL
                     YFQDSGLSCFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFIT
                     MSDGATSTFDLFEPLAEHCVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVL
                     NHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLG
                     ETQANQEKVLCCVSVCQGYSALRAQETFMQWDQCRRFYNFLMADNMKKIILSHRQALF
                     GDHVKKPQSLEDTDLSRLYTATSLMQIDDNVMRKFHGYNSLKEYYEEESCMRYLHRIY
                     VPLMLVNAADDPLVHESLLTIPKSLSEKRENVMFVLPLHGGHLGFFEGSVLFPEPLTW
                     MDKLVVEYANAICQWERNKSQCSDTEQVEADLE"
     misc_feature    314..1345
                     /gene="ABHD2"
                     /note="Predicted hydrolase of the alpha/beta-hydrolase
                     fold [General function prediction only]; Region: YheT;
                     COG0429"
                     /db_xref="CDD:440198"
ORIGIN      
        1 gccggtagcg gcgggagctg cactggccag gggttccggc tgcatttcct tgagcgccgg
       61 cggcagctgc tgagctgcgg gaacctgact gggggcgaac tgggccgcag tagtcaacca
      121 caagcagatc aagatgaatg ccatgctgga gacccccgag ctcccggccg tgtttgacgg
      181 ggtgaagctg gccgcagtgg ctgctgtgct gtatgtgatc gtccggtgtt tgaacctgaa
      241 gagccccacg gccccgcctg aactctactt ccaggactcg gggctctcat gcttcctgct
      301 caagtcctgt cctcttctga ccaaagaata tattccacct ttgatctggg ggaaaagtgg
      361 acacatccaa acagccttgt atgggaagat gggaagggtg aggtcaccac acccatatgg
      421 gcaccggaag ttcatcacca tgtctgacgg agccacttca acctttgacc tcttcgagcc
      481 cttggctgag cactgtgtgg gagatgatgt taccatggtc atctgccctg gaattgccaa
      541 tcacagtgag aagcagtaca tccgcacctt tgttgactac gcccagaaaa atggctatcg
      601 gtgtgccgtg ctgaaccacc tgggcgcctt gcccaacatt gaactgacct cgccacgcat
      661 gttcacctac ggctgcacct gggaatttgg agccatggta aactacatca agaagacata
      721 tcccctgacc cagctggtgg tcgtgggctt tagcctgggc ggtaacatcg tgtgtaaata
      781 cttgggagag acccaggcca accaagaaaa ggttctgtgc tgcgtcagcg tgtgccaggg
      841 ctacagtgca ctgagggccc aggaaacctt catgcagtgg gatcagtgcc ggcgcttcta
      901 caacttcctc atggccgaca acatgaagaa aattatcctc tcgcacaggc aagctctttt
      961 tggagaccat gttaagaaac ctcagagcct ggaggacacg gacttgagcc gcctctacac
     1021 agccacatcc ctgatgcaga tcgacgacaa tgtgatgagg aagtttcatg gctataactc
     1081 cctgaaggaa tattacgagg aagaaagctg catgaggtac ctgcacagga tttatgtacc
     1141 tctcatgttg gtgaatgcag ctgatgaccc cttggtgcat gaaagtcttc taaccattcc
     1201 aaaatctctt tcagagaaac gggagaacgt gatgtttgtg ctgcccctgc acgggggcca
     1261 cctgggcttc tttgaggggt ccgtgctgtt ccccgagccc ctgacatgga tggataagct
     1321 ggtggtggag tacgccaatg ccatttgcca atgggaacgt aacaagtcgc agtgctctga
     1381 cacggaacag gtggaggccg acctggagtg aggcagcccc cggactctgg tgcgcgccag
     1441 ctgccctggt caccggctgt ttcaggtctc ccatctccct cagtgacctg gatctgacct
     1501 cacaccatca acggagacca cccactagac acaccggact tgaagtaggt ggccgtccct
     1561 gggagctcca ggctattttt gtgcttagtt actggttttc tccactgcat tgttagccat
     1621 ggtgacaagc gacggggttt tcaccctcgt gtccggtgtc agcatctgat tgctttcaag
     1681 ccaattacat ctagtttccc tattaaaaat gtgtctgaac agcagttttg ctttgccaat
     1741 cagaaggctt ttccccaaga gcagtgaagg atgtatgtta ttttgtggtg gtgtatgtgt
     1801 cctgacgtag accctaaaaa gagccaatgc tgtagatgca gctcagcttg ggagccgggg
     1861 accctgggcc tcccaggcca agactgtagc ctcctacgtg gcaaagaaaa ttcccttgac
     1921 tcacaaacca agtttctccc tcactgtcct ctaagacagt tttcccacag gttgctgttg
     1981 atgagagtta cctgggacgc ttgttaccaa ttcagcctcc tgggtccctc cccttggaga
     2041 agctgtttcg gtgggtctgg gaaggggcct ggggattcta atttttgaca ggtgccccag
     2101 gtgattctcc tcaccaggca catttgagaa gcacgattgt gcagagcctt taaattagaa
     2161 acatctcggt agtttgtgtt gttgaaattc gtagtcagag gtatctctta gatcccagga
     2221 gcctccaaag ctgcaaggcc tatcttgtac ggctgccctg gtgcgatcgc tatgtgatgt
     2281 ctcagaaagg gcttgtgctg ggggtgaaga cttctcgcca tgcctgactc tgcctctcac
     2341 tggctatatg accctggaag agtccctttg aacttttgtt tcttcacctg taaaatgggg
     2401 gacttgggcc aggtagattg ccgataccac taccagttct aaagttcaat gacaaactca
     2461 gtttactgag gtttgagaga acacctctcc aggggagcct gagagctatt ctaagcatgt
     2521 agacgtcatt tgcctttcct tctttttttt tatgtccctc atttcatata aagagggggt
     2581 tttttggtgt tttttttttt taaaccctca gttataattt tattttttta acccaggtct
     2641 ttctaactct gacttttgat accaaacaat tcaaaagttg gatctgagtt tggagaaata
     2701 tctttccaac tgaagagggt gtgattttga aaccagattt tgtaatgtaa tagctcatat
     2761 ttgtagcgtg ttggacagat ctttccagag tgttatcttc tcagatgaaa agtcactcta
     2821 catttcaagt actactttcc tccaatcctg tggtacttga atatctaaaa accctgcact
     2881 ttgaaaaatc agcagttgct atctggaact aaacagaatt acaagtgaaa tgacctatag
     2941 atactttaaa aaaaaaaaat tcctggcttc ctctcctttg ctataggaca gacaggaatg
     3001 taaatagtgg gtctgtatgt ggatgtttaa ggggtaaagg gagccacctg agggcctgga
     3061 tgcagaccct catggccgca ggtgaatgta gtttgggcat cggtccaagt catgtgacag
     3121 taatgtctgt aacctgaaga agttgttttc tgacaatcac caggtcatcc taaataataa
     3181 catcaaaaac agccgtacct gaagagactg agacttctat ggtctcgact ttgcttcagt
     3241 acaatttctc acacacacca aattcatcat tgtgactttc cccccaagtt gttacttttc
     3301 aagtgctttt ctttttcatg ttcttttagt acaaattggc actttatcat ctacccctca
     3361 atttcgaagc tagtctctcc cctctgttac ttttccctcc aaccaacaac cacagctata
     3421 atctagaagg ttcatggtca tatatcctgc cacaaccttc acgtctcaag accttttttt
     3481 gtgaaattag atgaatgaag caataactta atggggttga tcaccatccc aggaagcaag
     3541 aggctccttt tcatttgcct taggtcacat cctttgatct gttctgacaa agcagtggcc
     3601 aggtaccagc tccattcagg aggagaaaac agtcctgttg tcgcacactt ggcagggatg
     3661 ggggcagaag tcctcggagc ctggtgtgca cggcagttct ggtggcccac ggaggagagg
     3721 cagggctcgg ggcacagcct ttgttgccac ataaccggaa tttaccccac gggactgtgg
     3781 agactgcctc ccagctgaaa tctttttagt gtgtgactct gaatggcact tacattccat
     3841 tttggctcac atgaaatcaa ctgaaggcct ctgttcaagc tccaggctct caggcatgga
     3901 aataacagtg taactgtggc tatcttacag gaaaattctt gtttgtccct gaatgagagc
     3961 acagaggcat tgaatttaca gagatgcgag ctcgcctaat aaacaaggaa gcagcatttt
     4021 atatgtaggt cagctttttc cttcctccag ctttccttgc ttttccttcg ttcctgatga
     4081 taatgtgagg gctcttgcta ctgaggtcct cttgggctaa aacaaggcag aattttcaaa
     4141 aagtatttga atattatatt ttaaaatcag gttaaaatac aataaaatca ggttaaggat
     4201 ataaattgcg gaaacctaga cagttctatc gcaggaagaa catgttaaaa accaagcagg
     4261 ggcttccctg gtggcgcagt ggatgagagt ccgcctgccg atgcagagga cacaggttcg
     4321 tgccccggtc cgggaggatc ccacatgccg cggagcggct gggcccgtga gccatggccg
     4381 ctgggcttgt gcgtccggag cctgtgctcc acaacgggag aggccacaac agtgagaggc
     4441 ccgcgcacag caaaaaaaaa aaaaaaaaaa aaaccaagca ggtttttaac agctctccgg
     4501 gtggttctcc ctgcctctaa acagtttaaa gacagtgatg aagatcccag tcaagtcagg
     4561 attatctgac ttgaaaaaat ggtctcaagt ctccttgatg catttatgtt agtagggagt
     4621 ttaacagact tgaggaaaac ctcttacctt cccgcccgtg tgtttgcacc agtgattcca
     4681 gagcagaagg aaggcagaaa gttgtttgtt gtcactatat tctttgaacc tccccgcagc
     4741 gttttacacg tgagagtggg aatatacctg caaggggagc atccctttct tgacatggtg
     4801 ttagggaacc agggtttggg agacttggat tcttgtcctg tctctaattt acattggatt
     4861 gtgggcaatc acttcacctc tccgagctcc aattacctca tcttagacca tctctaagtc
     4921 tacttaatct acttacacat catttgccag aacattcccg ctggccttct tacagccatt
     4981 gcgagtggaa acagataagt caagacttca ggctgatctt gaggggactt ggagagaggg
     5041 agctactgca ttcagccttt gctggtgaag acccttgatt ttgcccaaag ccctgtgtct
     5101 cttactggct tctcttcaga gcctccattg tcatctcaat attctttctg tactgagggt
     5161 ggtcttatga ctgggacagg tgctgaccat tggaacgagg tgaatgtccc catccttctg
     5221 tgtgactcgg gcaagctttg agagttccca gggcagaaac cctgcctgct cagactttca
     5281 ttctaaaact acagtcttca ttaaagctga actttctggg tagctgagct tatatgcctg
     5341 gcatctgaat gagagctctc tttgtcactg tgtggcttga gatccgtttt gccagctccg
     5401 gggaaacaat acatgtgttc ttgtttgtgt ttgccgggca agcagatgtc tgagctgtga
     5461 gaggcttttc ttttcccgtg gcattgcttc tgacttagca ctaaagtgaa gatcactgaa
     5521 acatcacgtt gagttgaaaa ctcaggtctt tgtcgtctaa ggcaggacag gagagttatt
     5581 aagaagcatt tcactgcagc atccactcac aatatcatct ggaattgttc tctttgccca
     5641 gaaagcctta acttgcctct agaatatccc ctggtggtac aacactatag tggctttgga
     5701 attcaaatta ttctgctgca gaagtctgaa gcaaagctgc cacaaaacca gaaaatgtct
     5761 ccatgtggcc tgtacgctcc ttattacatt aggtgccccc accccttgac aataagagca
     5821 atccagaact ggccaaacac ctcatctctg atgcctttct tccttcttgg cctcactctg
     5881 ttgttcaaag ccactttgga tgcttcaaaa aaccatgaaa agtggcctgc ctttggcatt
     5941 tagaggccaa gcaattgagg gaaaggtttt cttctccccc ctgttaccaa agcagaggga
     6001 agtgccccct cttcataaac taggattgct tttgccaaat tctatttgaa ggggaacagg
     6061 cccgtactcg cagtgagaac tgggatgcta tccaaagcta cagctgcttc ctcttgccta
     6121 tgtcactgct gcaaccgcct cggacgctgt agcccaggca tccccccgaa gtggcccttg
     6181 gaagcaggct gcagagccca gctcgccagc cattctcaga ccccagacgg tagacagctg
     6241 ccccttttga aggagtcagc cccctacaca caccacgttt tctgaacctt ttttcctagc
     6301 atgtattgtg ggtaaaacat tcacctatct ctaatgaata agctgaagtt aatttccaac
     6361 cagtgaatta agtcctttaa cttgactcct gtcagttagt aataaaacct ataacctgcc
     6421 gtcttcccgt tctggtcctc attagccaag aaatctatcg ccgtaagttg gggacagtcc
     6481 acgtatagca cctgcagaaa tacctttcat ctcaataggc attctccttc cagaccaccc
     6541 acatggagca gccaacagtc acgtagaata attgctgagc cctcagtccc agcgccagcc
     6601 actccctccc agtgggtgga ccgagttcct gggtgtggga gttaggcttg gtttggtttt
     6661 tgctttggcc tctttagttt tcctaaagca caagtccatg tagaatcctg tcacctctcc
     6721 acaccagttt caggtgatct gggtctctcc cactgcctca ggaagacctt cactgtacct
     6781 gagcttttga cttctgccac tgcagctgcc ttagcgacac caggggctgg gggcgtggag
     6841 gggggagcca gtttgcatct ccccctttcc tggttagact tccatgaacc ccatgtttct
     6901 gttggcagat ctgcttccag actgattttt gagaaccatc actttcacat tcctaatttt
     6961 tgtttgtttt gtttgatttc tttttttttg gactttctga aacttcaaat gctgccctga
     7021 aaataatgta tttttgagtt tgtgttctga aagcctccgt gctggtggat tgggggtggg
     7081 ggaggcagaa tacaggatcc tccagcactg aggtgtttaa gatttgcaac tagcaatgca
     7141 attttttcta aatatgagga tatttacctt tattaagaaa ttaaacagtg gtgtccttga
     7201 tcattttatg ttctcatatt acttttggtt ctgttttgat tctgtgtggt ggtaaacaaa
     7261 gatcattaca aacaaaaact gtaattttgt tatctttgat tcaatggaat ttctttactt
     7321 aaaaaaataa aaggctaaaa atgtgg
//
LOCUS       XM_032618114            7558 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus abhydrolase domain containing 2,
            acylglycerol lipase (ABHD2), transcript variant X3, mRNA.
ACCESSION   XM_032618114
VERSION     XM_032618114.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7558
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7558
                     /gene="ABHD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 55 long SRA reads, 15
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746471"
     CDS             346..1623
                     /gene="ABHD2"
                     /codon_start=1
                     /product="monoacylglycerol lipase ABHD2 isoform X2"
                     /protein_id="XP_032474005.1"
                     /db_xref="GeneID:116746471"
                     /translation="MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPEL
                     YFQDSGLSCFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFIT
                     MSDGATSTFDLFEPLAEHCVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVL
                     NHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLG
                     ETQANQEKVLCCVSVCQGYSALRAQETFMQWDQCRRFYNFLMADNMKKIILSHRQALF
                     GDHVKKPQSLEDTDLSRLYTATSLMQIDDNVMRKFHGYNSLKEYYEEESCMRYLHRIY
                     VPLMLVNAADDPLVHESLLTIPKSLSEKRENVMFVLPLHGGHLGFFEGSVLFPEPLTW
                     MDKLVVEYANAICQWERNKSQCSDTEQVEADLE"
     misc_feature    526..1557
                     /gene="ABHD2"
                     /note="Predicted hydrolase of the alpha/beta-hydrolase
                     fold [General function prediction only]; Region: YheT;
                     COG0429"
                     /db_xref="CDD:440198"
ORIGIN      
        1 agtgcggggc tagtagagca gcggctgggc ggcccaatga acgggcgggt ttccgtggct
       61 aggggcgtgg cagaatcggt cgtcaggggc gtggcggcag ttgcttgggc ggggccggta
      121 gcggcgggag ctgcactggc caggggttcc ggctgcattt ccttgagcgc cggcggcagc
      181 tgctgagctg cgggaacctg actgggggcg aactgggccg cagtagtcaa ccacaagcag
      241 cttttaggtt aaatcgaatg agatctgacc tgactggccc agctgtacag cttttcaaga
      301 acagttcata ctcgcagtag agaggaacag gtgacgtaga tcaagatgaa tgccatgctg
      361 gagacccccg agctcccggc cgtgtttgac ggggtgaagc tggccgcagt ggctgctgtg
      421 ctgtatgtga tcgtccggtg tttgaacctg aagagcccca cggccccgcc tgaactctac
      481 ttccaggact cggggctctc atgcttcctg ctcaagtcct gtcctcttct gaccaaagaa
      541 tatattccac ctttgatctg ggggaaaagt ggacacatcc aaacagcctt gtatgggaag
      601 atgggaaggg tgaggtcacc acacccatat gggcaccgga agttcatcac catgtctgac
      661 ggagccactt caacctttga cctcttcgag cccttggctg agcactgtgt gggagatgat
      721 gttaccatgg tcatctgccc tggaattgcc aatcacagtg agaagcagta catccgcacc
      781 tttgttgact acgcccagaa aaatggctat cggtgtgccg tgctgaacca cctgggcgcc
      841 ttgcccaaca ttgaactgac ctcgccacgc atgttcacct acggctgcac ctgggaattt
      901 ggagccatgg taaactacat caagaagaca tatcccctga cccagctggt ggtcgtgggc
      961 tttagcctgg gcggtaacat cgtgtgtaaa tacttgggag agacccaggc caaccaagaa
     1021 aaggttctgt gctgcgtcag cgtgtgccag ggctacagtg cactgagggc ccaggaaacc
     1081 ttcatgcagt gggatcagtg ccggcgcttc tacaacttcc tcatggccga caacatgaag
     1141 aaaattatcc tctcgcacag gcaagctctt tttggagacc atgttaagaa acctcagagc
     1201 ctggaggaca cggacttgag ccgcctctac acagccacat ccctgatgca gatcgacgac
     1261 aatgtgatga ggaagtttca tggctataac tccctgaagg aatattacga ggaagaaagc
     1321 tgcatgaggt acctgcacag gatttatgta cctctcatgt tggtgaatgc agctgatgac
     1381 cccttggtgc atgaaagtct tctaaccatt ccaaaatctc tttcagagaa acgggagaac
     1441 gtgatgtttg tgctgcccct gcacgggggc cacctgggct tctttgaggg gtccgtgctg
     1501 ttccccgagc ccctgacatg gatggataag ctggtggtgg agtacgccaa tgccatttgc
     1561 caatgggaac gtaacaagtc gcagtgctct gacacggaac aggtggaggc cgacctggag
     1621 tgaggcagcc cccggactct ggtgcgcgcc agctgccctg gtcaccggct gtttcaggtc
     1681 tcccatctcc ctcagtgacc tggatctgac ctcacaccat caacggagac cacccactag
     1741 acacaccgga cttgaagtag gtggccgtcc ctgggagctc caggctattt ttgtgcttag
     1801 ttactggttt tctccactgc attgttagcc atggtgacaa gcgacggggt tttcaccctc
     1861 gtgtccggtg tcagcatctg attgctttca agccaattac atctagtttc cctattaaaa
     1921 atgtgtctga acagcagttt tgctttgcca atcagaaggc ttttccccaa gagcagtgaa
     1981 ggatgtatgt tattttgtgg tggtgtatgt gtcctgacgt agaccctaaa aagagccaat
     2041 gctgtagatg cagctcagct tgggagccgg ggaccctggg cctcccaggc caagactgta
     2101 gcctcctacg tggcaaagaa aattcccttg actcacaaac caagtttctc cctcactgtc
     2161 ctctaagaca gttttcccac aggttgctgt tgatgagagt tacctgggac gcttgttacc
     2221 aattcagcct cctgggtccc tccccttgga gaagctgttt cggtgggtct gggaaggggc
     2281 ctggggattc taatttttga caggtgcccc aggtgattct cctcaccagg cacatttgag
     2341 aagcacgatt gtgcagagcc tttaaattag aaacatctcg gtagtttgtg ttgttgaaat
     2401 tcgtagtcag aggtatctct tagatcccag gagcctccaa agctgcaagg cctatcttgt
     2461 acggctgccc tggtgcgatc gctatgtgat gtctcagaaa gggcttgtgc tgggggtgaa
     2521 gacttctcgc catgcctgac tctgcctctc actggctata tgaccctgga agagtccctt
     2581 tgaacttttg tttcttcacc tgtaaaatgg gggacttggg ccaggtagat tgccgatacc
     2641 actaccagtt ctaaagttca atgacaaact cagtttactg aggtttgaga gaacacctct
     2701 ccaggggagc ctgagagcta ttctaagcat gtagacgtca tttgcctttc cttctttttt
     2761 tttatgtccc tcatttcata taaagagggg gttttttggt gttttttttt tttaaaccct
     2821 cagttataat tttatttttt taacccaggt ctttctaact ctgacttttg ataccaaaca
     2881 attcaaaagt tggatctgag tttggagaaa tatctttcca actgaagagg gtgtgatttt
     2941 gaaaccagat tttgtaatgt aatagctcat atttgtagcg tgttggacag atctttccag
     3001 agtgttatct tctcagatga aaagtcactc tacatttcaa gtactacttt cctccaatcc
     3061 tgtggtactt gaatatctaa aaaccctgca ctttgaaaaa tcagcagttg ctatctggaa
     3121 ctaaacagaa ttacaagtga aatgacctat agatacttta aaaaaaaaaa attcctggct
     3181 tcctctcctt tgctatagga cagacaggaa tgtaaatagt gggtctgtat gtggatgttt
     3241 aaggggtaaa gggagccacc tgagggcctg gatgcagacc ctcatggccg caggtgaatg
     3301 tagtttgggc atcggtccaa gtcatgtgac agtaatgtct gtaacctgaa gaagttgttt
     3361 tctgacaatc accaggtcat cctaaataat aacatcaaaa acagccgtac ctgaagagac
     3421 tgagacttct atggtctcga ctttgcttca gtacaatttc tcacacacac caaattcatc
     3481 attgtgactt tccccccaag ttgttacttt tcaagtgctt ttctttttca tgttctttta
     3541 gtacaaattg gcactttatc atctacccct caatttcgaa gctagtctct cccctctgtt
     3601 acttttccct ccaaccaaca accacagcta taatctagaa ggttcatggt catatatcct
     3661 gccacaacct tcacgtctca agaccttttt ttgtgaaatt agatgaatga agcaataact
     3721 taatggggtt gatcaccatc ccaggaagca agaggctcct tttcatttgc cttaggtcac
     3781 atcctttgat ctgttctgac aaagcagtgg ccaggtacca gctccattca ggaggagaaa
     3841 acagtcctgt tgtcgcacac ttggcaggga tgggggcaga agtcctcgga gcctggtgtg
     3901 cacggcagtt ctggtggccc acggaggaga ggcagggctc ggggcacagc ctttgttgcc
     3961 acataaccgg aatttacccc acgggactgt ggagactgcc tcccagctga aatcttttta
     4021 gtgtgtgact ctgaatggca cttacattcc attttggctc acatgaaatc aactgaaggc
     4081 ctctgttcaa gctccaggct ctcaggcatg gaaataacag tgtaactgtg gctatcttac
     4141 aggaaaattc ttgtttgtcc ctgaatgaga gcacagaggc attgaattta cagagatgcg
     4201 agctcgccta ataaacaagg aagcagcatt ttatatgtag gtcagctttt tccttcctcc
     4261 agctttcctt gcttttcctt cgttcctgat gataatgtga gggctcttgc tactgaggtc
     4321 ctcttgggct aaaacaaggc agaattttca aaaagtattt gaatattata ttttaaaatc
     4381 aggttaaaat acaataaaat caggttaagg atataaattg cggaaaccta gacagttcta
     4441 tcgcaggaag aacatgttaa aaaccaagca ggggcttccc tggtggcgca gtggatgaga
     4501 gtccgcctgc cgatgcagag gacacaggtt cgtgccccgg tccgggagga tcccacatgc
     4561 cgcggagcgg ctgggcccgt gagccatggc cgctgggctt gtgcgtccgg agcctgtgct
     4621 ccacaacggg agaggccaca acagtgagag gcccgcgcac agcaaaaaaa aaaaaaaaaa
     4681 aaaaaccaag caggttttta acagctctcc gggtggttct ccctgcctct aaacagttta
     4741 aagacagtga tgaagatccc agtcaagtca ggattatctg acttgaaaaa atggtctcaa
     4801 gtctccttga tgcatttatg ttagtaggga gtttaacaga cttgaggaaa acctcttacc
     4861 ttcccgcccg tgtgtttgca ccagtgattc cagagcagaa ggaaggcaga aagttgtttg
     4921 ttgtcactat attctttgaa cctccccgca gcgttttaca cgtgagagtg ggaatatacc
     4981 tgcaagggga gcatcccttt cttgacatgg tgttagggaa ccagggtttg ggagacttgg
     5041 attcttgtcc tgtctctaat ttacattgga ttgtgggcaa tcacttcacc tctccgagct
     5101 ccaattacct catcttagac catctctaag tctacttaat ctacttacac atcatttgcc
     5161 agaacattcc cgctggcctt cttacagcca ttgcgagtgg aaacagataa gtcaagactt
     5221 caggctgatc ttgaggggac ttggagagag ggagctactg cattcagcct ttgctggtga
     5281 agacccttga ttttgcccaa agccctgtgt ctcttactgg cttctcttca gagcctccat
     5341 tgtcatctca atattctttc tgtactgagg gtggtcttat gactgggaca ggtgctgacc
     5401 attggaacga ggtgaatgtc cccatccttc tgtgtgactc gggcaagctt tgagagttcc
     5461 cagggcagaa accctgcctg ctcagacttt cattctaaaa ctacagtctt cattaaagct
     5521 gaactttctg ggtagctgag cttatatgcc tggcatctga atgagagctc tctttgtcac
     5581 tgtgtggctt gagatccgtt ttgccagctc cggggaaaca atacatgtgt tcttgtttgt
     5641 gtttgccggg caagcagatg tctgagctgt gagaggcttt tcttttcccg tggcattgct
     5701 tctgacttag cactaaagtg aagatcactg aaacatcacg ttgagttgaa aactcaggtc
     5761 tttgtcgtct aaggcaggac aggagagtta ttaagaagca tttcactgca gcatccactc
     5821 acaatatcat ctggaattgt tctctttgcc cagaaagcct taacttgcct ctagaatatc
     5881 ccctggtggt acaacactat agtggctttg gaattcaaat tattctgctg cagaagtctg
     5941 aagcaaagct gccacaaaac cagaaaatgt ctccatgtgg cctgtacgct ccttattaca
     6001 ttaggtgccc ccaccccttg acaataagag caatccagaa ctggccaaac acctcatctc
     6061 tgatgccttt cttccttctt ggcctcactc tgttgttcaa agccactttg gatgcttcaa
     6121 aaaaccatga aaagtggcct gcctttggca tttagaggcc aagcaattga gggaaaggtt
     6181 ttcttctccc ccctgttacc aaagcagagg gaagtgcccc ctcttcataa actaggattg
     6241 cttttgccaa attctatttg aaggggaaca ggcccgtact cgcagtgaga actgggatgc
     6301 tatccaaagc tacagctgct tcctcttgcc tatgtcactg ctgcaaccgc ctcggacgct
     6361 gtagcccagg catccccccg aagtggccct tggaagcagg ctgcagagcc cagctcgcca
     6421 gccattctca gaccccagac ggtagacagc tgcccctttt gaaggagtca gccccctaca
     6481 cacaccacgt tttctgaacc ttttttccta gcatgtattg tgggtaaaac attcacctat
     6541 ctctaatgaa taagctgaag ttaatttcca accagtgaat taagtccttt aacttgactc
     6601 ctgtcagtta gtaataaaac ctataacctg ccgtcttccc gttctggtcc tcattagcca
     6661 agaaatctat cgccgtaagt tggggacagt ccacgtatag cacctgcaga aatacctttc
     6721 atctcaatag gcattctcct tccagaccac ccacatggag cagccaacag tcacgtagaa
     6781 taattgctga gccctcagtc ccagcgccag ccactccctc ccagtgggtg gaccgagttc
     6841 ctgggtgtgg gagttaggct tggtttggtt tttgctttgg cctctttagt tttcctaaag
     6901 cacaagtcca tgtagaatcc tgtcacctct ccacaccagt ttcaggtgat ctgggtctct
     6961 cccactgcct caggaagacc ttcactgtac ctgagctttt gacttctgcc actgcagctg
     7021 ccttagcgac accaggggct gggggcgtgg aggggggagc cagtttgcat ctcccccttt
     7081 cctggttaga cttccatgaa ccccatgttt ctgttggcag atctgcttcc agactgattt
     7141 ttgagaacca tcactttcac attcctaatt tttgtttgtt ttgtttgatt tctttttttt
     7201 tggactttct gaaacttcaa atgctgccct gaaaataatg tatttttgag tttgtgttct
     7261 gaaagcctcc gtgctggtgg attgggggtg ggggaggcag aatacaggat cctccagcac
     7321 tgaggtgttt aagatttgca actagcaatg caattttttc taaatatgag gatatttacc
     7381 tttattaaga aattaaacag tggtgtcctt gatcatttta tgttctcata ttacttttgg
     7441 ttctgttttg attctgtgtg gtggtaaaca aagatcatta caaacaaaaa ctgtaatttt
     7501 gttatctttg attcaatgga atttctttac ttaaaaaaat aaaaggctaa aaatgtgg
//
LOCUS       XM_032618115            7381 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus abhydrolase domain containing 2,
            acylglycerol lipase (ABHD2), transcript variant X4, mRNA.
ACCESSION   XM_032618115
VERSION     XM_032618115.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7381
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7381
                     /gene="ABHD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 55 long SRA reads, 15 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 7 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746471"
     CDS             169..1446
                     /gene="ABHD2"
                     /codon_start=1
                     /product="monoacylglycerol lipase ABHD2 isoform X2"
                     /protein_id="XP_032474006.1"
                     /db_xref="GeneID:116746471"
                     /translation="MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPEL
                     YFQDSGLSCFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFIT
                     MSDGATSTFDLFEPLAEHCVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVL
                     NHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLG
                     ETQANQEKVLCCVSVCQGYSALRAQETFMQWDQCRRFYNFLMADNMKKIILSHRQALF
                     GDHVKKPQSLEDTDLSRLYTATSLMQIDDNVMRKFHGYNSLKEYYEEESCMRYLHRIY
                     VPLMLVNAADDPLVHESLLTIPKSLSEKRENVMFVLPLHGGHLGFFEGSVLFPEPLTW
                     MDKLVVEYANAICQWERNKSQCSDTEQVEADLE"
     misc_feature    349..1380
                     /gene="ABHD2"
                     /note="Predicted hydrolase of the alpha/beta-hydrolase
                     fold [General function prediction only]; Region: YheT;
                     COG0429"
                     /db_xref="CDD:440198"
ORIGIN      
        1 ccttgagcgc cggcggcagc tgctgagctg cgggaacctg actgggggcg aactgggccg
       61 cagtagtcaa ccacaagcag gtggtggctc ccgttgtttc tgagatataa tgtgacttat
      121 cacctgagtc cccatggcac cttttgctct cctccagcaa aaatcaagat gaatgccatg
      181 ctggagaccc ccgagctccc ggccgtgttt gacggggtga agctggccgc agtggctgct
      241 gtgctgtatg tgatcgtccg gtgtttgaac ctgaagagcc ccacggcccc gcctgaactc
      301 tacttccagg actcggggct ctcatgcttc ctgctcaagt cctgtcctct tctgaccaaa
      361 gaatatattc cacctttgat ctgggggaaa agtggacaca tccaaacagc cttgtatggg
      421 aagatgggaa gggtgaggtc accacaccca tatgggcacc ggaagttcat caccatgtct
      481 gacggagcca cttcaacctt tgacctcttc gagcccttgg ctgagcactg tgtgggagat
      541 gatgttacca tggtcatctg ccctggaatt gccaatcaca gtgagaagca gtacatccgc
      601 acctttgttg actacgccca gaaaaatggc tatcggtgtg ccgtgctgaa ccacctgggc
      661 gccttgccca acattgaact gacctcgcca cgcatgttca cctacggctg cacctgggaa
      721 tttggagcca tggtaaacta catcaagaag acatatcccc tgacccagct ggtggtcgtg
      781 ggctttagcc tgggcggtaa catcgtgtgt aaatacttgg gagagaccca ggccaaccaa
      841 gaaaaggttc tgtgctgcgt cagcgtgtgc cagggctaca gtgcactgag ggcccaggaa
      901 accttcatgc agtgggatca gtgccggcgc ttctacaact tcctcatggc cgacaacatg
      961 aagaaaatta tcctctcgca caggcaagct ctttttggag accatgttaa gaaacctcag
     1021 agcctggagg acacggactt gagccgcctc tacacagcca catccctgat gcagatcgac
     1081 gacaatgtga tgaggaagtt tcatggctat aactccctga aggaatatta cgaggaagaa
     1141 agctgcatga ggtacctgca caggatttat gtacctctca tgttggtgaa tgcagctgat
     1201 gaccccttgg tgcatgaaag tcttctaacc attccaaaat ctctttcaga gaaacgggag
     1261 aacgtgatgt ttgtgctgcc cctgcacggg ggccacctgg gcttctttga ggggtccgtg
     1321 ctgttccccg agcccctgac atggatggat aagctggtgg tggagtacgc caatgccatt
     1381 tgccaatggg aacgtaacaa gtcgcagtgc tctgacacgg aacaggtgga ggccgacctg
     1441 gagtgaggca gcccccggac tctggtgcgc gccagctgcc ctggtcaccg gctgtttcag
     1501 gtctcccatc tccctcagtg acctggatct gacctcacac catcaacgga gaccacccac
     1561 tagacacacc ggacttgaag taggtggccg tccctgggag ctccaggcta tttttgtgct
     1621 tagttactgg ttttctccac tgcattgtta gccatggtga caagcgacgg ggttttcacc
     1681 ctcgtgtccg gtgtcagcat ctgattgctt tcaagccaat tacatctagt ttccctatta
     1741 aaaatgtgtc tgaacagcag ttttgctttg ccaatcagaa ggcttttccc caagagcagt
     1801 gaaggatgta tgttattttg tggtggtgta tgtgtcctga cgtagaccct aaaaagagcc
     1861 aatgctgtag atgcagctca gcttgggagc cggggaccct gggcctccca ggccaagact
     1921 gtagcctcct acgtggcaaa gaaaattccc ttgactcaca aaccaagttt ctccctcact
     1981 gtcctctaag acagttttcc cacaggttgc tgttgatgag agttacctgg gacgcttgtt
     2041 accaattcag cctcctgggt ccctcccctt ggagaagctg tttcggtggg tctgggaagg
     2101 ggcctgggga ttctaatttt tgacaggtgc cccaggtgat tctcctcacc aggcacattt
     2161 gagaagcacg attgtgcaga gcctttaaat tagaaacatc tcggtagttt gtgttgttga
     2221 aattcgtagt cagaggtatc tcttagatcc caggagcctc caaagctgca aggcctatct
     2281 tgtacggctg ccctggtgcg atcgctatgt gatgtctcag aaagggcttg tgctgggggt
     2341 gaagacttct cgccatgcct gactctgcct ctcactggct atatgaccct ggaagagtcc
     2401 ctttgaactt ttgtttcttc acctgtaaaa tgggggactt gggccaggta gattgccgat
     2461 accactacca gttctaaagt tcaatgacaa actcagttta ctgaggtttg agagaacacc
     2521 tctccagggg agcctgagag ctattctaag catgtagacg tcatttgcct ttccttcttt
     2581 ttttttatgt ccctcatttc atataaagag ggggtttttt ggtgtttttt ttttttaaac
     2641 cctcagttat aattttattt ttttaaccca ggtctttcta actctgactt ttgataccaa
     2701 acaattcaaa agttggatct gagtttggag aaatatcttt ccaactgaag agggtgtgat
     2761 tttgaaacca gattttgtaa tgtaatagct catatttgta gcgtgttgga cagatctttc
     2821 cagagtgtta tcttctcaga tgaaaagtca ctctacattt caagtactac tttcctccaa
     2881 tcctgtggta cttgaatatc taaaaaccct gcactttgaa aaatcagcag ttgctatctg
     2941 gaactaaaca gaattacaag tgaaatgacc tatagatact ttaaaaaaaa aaaattcctg
     3001 gcttcctctc ctttgctata ggacagacag gaatgtaaat agtgggtctg tatgtggatg
     3061 tttaaggggt aaagggagcc acctgagggc ctggatgcag accctcatgg ccgcaggtga
     3121 atgtagtttg ggcatcggtc caagtcatgt gacagtaatg tctgtaacct gaagaagttg
     3181 ttttctgaca atcaccaggt catcctaaat aataacatca aaaacagccg tacctgaaga
     3241 gactgagact tctatggtct cgactttgct tcagtacaat ttctcacaca caccaaattc
     3301 atcattgtga ctttcccccc aagttgttac ttttcaagtg cttttctttt tcatgttctt
     3361 ttagtacaaa ttggcacttt atcatctacc cctcaatttc gaagctagtc tctcccctct
     3421 gttacttttc cctccaacca acaaccacag ctataatcta gaaggttcat ggtcatatat
     3481 cctgccacaa ccttcacgtc tcaagacctt tttttgtgaa attagatgaa tgaagcaata
     3541 acttaatggg gttgatcacc atcccaggaa gcaagaggct ccttttcatt tgccttaggt
     3601 cacatccttt gatctgttct gacaaagcag tggccaggta ccagctccat tcaggaggag
     3661 aaaacagtcc tgttgtcgca cacttggcag ggatgggggc agaagtcctc ggagcctggt
     3721 gtgcacggca gttctggtgg cccacggagg agaggcaggg ctcggggcac agcctttgtt
     3781 gccacataac cggaatttac cccacgggac tgtggagact gcctcccagc tgaaatcttt
     3841 ttagtgtgtg actctgaatg gcacttacat tccattttgg ctcacatgaa atcaactgaa
     3901 ggcctctgtt caagctccag gctctcaggc atggaaataa cagtgtaact gtggctatct
     3961 tacaggaaaa ttcttgtttg tccctgaatg agagcacaga ggcattgaat ttacagagat
     4021 gcgagctcgc ctaataaaca aggaagcagc attttatatg taggtcagct ttttccttcc
     4081 tccagctttc cttgcttttc cttcgttcct gatgataatg tgagggctct tgctactgag
     4141 gtcctcttgg gctaaaacaa ggcagaattt tcaaaaagta tttgaatatt atattttaaa
     4201 atcaggttaa aatacaataa aatcaggtta aggatataaa ttgcggaaac ctagacagtt
     4261 ctatcgcagg aagaacatgt taaaaaccaa gcaggggctt ccctggtggc gcagtggatg
     4321 agagtccgcc tgccgatgca gaggacacag gttcgtgccc cggtccggga ggatcccaca
     4381 tgccgcggag cggctgggcc cgtgagccat ggccgctggg cttgtgcgtc cggagcctgt
     4441 gctccacaac gggagaggcc acaacagtga gaggcccgcg cacagcaaaa aaaaaaaaaa
     4501 aaaaaaaacc aagcaggttt ttaacagctc tccgggtggt tctccctgcc tctaaacagt
     4561 ttaaagacag tgatgaagat cccagtcaag tcaggattat ctgacttgaa aaaatggtct
     4621 caagtctcct tgatgcattt atgttagtag ggagtttaac agacttgagg aaaacctctt
     4681 accttcccgc ccgtgtgttt gcaccagtga ttccagagca gaaggaaggc agaaagttgt
     4741 ttgttgtcac tatattcttt gaacctcccc gcagcgtttt acacgtgaga gtgggaatat
     4801 acctgcaagg ggagcatccc tttcttgaca tggtgttagg gaaccagggt ttgggagact
     4861 tggattcttg tcctgtctct aatttacatt ggattgtggg caatcacttc acctctccga
     4921 gctccaatta cctcatctta gaccatctct aagtctactt aatctactta cacatcattt
     4981 gccagaacat tcccgctggc cttcttacag ccattgcgag tggaaacaga taagtcaaga
     5041 cttcaggctg atcttgaggg gacttggaga gagggagcta ctgcattcag cctttgctgg
     5101 tgaagaccct tgattttgcc caaagccctg tgtctcttac tggcttctct tcagagcctc
     5161 cattgtcatc tcaatattct ttctgtactg agggtggtct tatgactggg acaggtgctg
     5221 accattggaa cgaggtgaat gtccccatcc ttctgtgtga ctcgggcaag ctttgagagt
     5281 tcccagggca gaaaccctgc ctgctcagac tttcattcta aaactacagt cttcattaaa
     5341 gctgaacttt ctgggtagct gagcttatat gcctggcatc tgaatgagag ctctctttgt
     5401 cactgtgtgg cttgagatcc gttttgccag ctccggggaa acaatacatg tgttcttgtt
     5461 tgtgtttgcc gggcaagcag atgtctgagc tgtgagaggc ttttcttttc ccgtggcatt
     5521 gcttctgact tagcactaaa gtgaagatca ctgaaacatc acgttgagtt gaaaactcag
     5581 gtctttgtcg tctaaggcag gacaggagag ttattaagaa gcatttcact gcagcatcca
     5641 ctcacaatat catctggaat tgttctcttt gcccagaaag ccttaacttg cctctagaat
     5701 atcccctggt ggtacaacac tatagtggct ttggaattca aattattctg ctgcagaagt
     5761 ctgaagcaaa gctgccacaa aaccagaaaa tgtctccatg tggcctgtac gctccttatt
     5821 acattaggtg cccccacccc ttgacaataa gagcaatcca gaactggcca aacacctcat
     5881 ctctgatgcc tttcttcctt cttggcctca ctctgttgtt caaagccact ttggatgctt
     5941 caaaaaacca tgaaaagtgg cctgcctttg gcatttagag gccaagcaat tgagggaaag
     6001 gttttcttct cccccctgtt accaaagcag agggaagtgc cccctcttca taaactagga
     6061 ttgcttttgc caaattctat ttgaagggga acaggcccgt actcgcagtg agaactggga
     6121 tgctatccaa agctacagct gcttcctctt gcctatgtca ctgctgcaac cgcctcggac
     6181 gctgtagccc aggcatcccc ccgaagtggc ccttggaagc aggctgcaga gcccagctcg
     6241 ccagccattc tcagacccca gacggtagac agctgcccct tttgaaggag tcagccccct
     6301 acacacacca cgttttctga accttttttc ctagcatgta ttgtgggtaa aacattcacc
     6361 tatctctaat gaataagctg aagttaattt ccaaccagtg aattaagtcc tttaacttga
     6421 ctcctgtcag ttagtaataa aacctataac ctgccgtctt cccgttctgg tcctcattag
     6481 ccaagaaatc tatcgccgta agttggggac agtccacgta tagcacctgc agaaatacct
     6541 ttcatctcaa taggcattct ccttccagac cacccacatg gagcagccaa cagtcacgta
     6601 gaataattgc tgagccctca gtcccagcgc cagccactcc ctcccagtgg gtggaccgag
     6661 ttcctgggtg tgggagttag gcttggtttg gtttttgctt tggcctcttt agttttccta
     6721 aagcacaagt ccatgtagaa tcctgtcacc tctccacacc agtttcaggt gatctgggtc
     6781 tctcccactg cctcaggaag accttcactg tacctgagct tttgacttct gccactgcag
     6841 ctgccttagc gacaccaggg gctgggggcg tggagggggg agccagtttg catctccccc
     6901 tttcctggtt agacttccat gaaccccatg tttctgttgg cagatctgct tccagactga
     6961 tttttgagaa ccatcacttt cacattccta atttttgttt gttttgtttg atttcttttt
     7021 ttttggactt tctgaaactt caaatgctgc cctgaaaata atgtattttt gagtttgtgt
     7081 tctgaaagcc tccgtgctgg tggattgggg gtgggggagg cagaatacag gatcctccag
     7141 cactgaggtg tttaagattt gcaactagca atgcaatttt ttctaaatat gaggatattt
     7201 acctttatta agaaattaaa cagtggtgtc cttgatcatt ttatgttctc atattacttt
     7261 tggttctgtt ttgattctgt gtggtggtaa acaaagatca ttacaaacaa aaactgtaat
     7321 tttgttatct ttgattcaat ggaatttctt tacttaaaaa aataaaaggc taaaaatgtg
     7381 g
//
LOCUS       XR_004347766            7217 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus abhydrolase domain containing 2,
            acylglycerol lipase (ABHD2), transcript variant X5, misc_RNA.
ACCESSION   XR_004347766
VERSION     XR_004347766.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7217
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7217
                     /gene="ABHD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 40 long SRA reads, 15 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:116746471"
     misc_RNA        1..7217
                     /gene="ABHD2"
                     /product="abhydrolase domain containing 2, acylglycerol
                     lipase, transcript variant X5"
                     /db_xref="GeneID:116746471"
ORIGIN      
        1 ggccggtagc ggcgggagct gcactggcca ggggttccgg ctgcatttcc ttgagcgccg
       61 gcggcagctg ctgagctgcg ggaacctgac tgggggcgaa ctgggccgca gtagtcaacc
      121 acaagcagat caagatgaat gccatgctgg agacccccga gctcccggcc gtgtttgacg
      181 gggtgaagct ggccgcagtg gctgctgtgc tgtatgtgat cgtccggtgt ttgaacctga
      241 agagccccac ggccccgcct gaactctact tccaggactc ggggctctca tgcttcctgc
      301 tcaagtcctg tcctcttctg accaaagaat atattccacc tttgatctgg gggaaaagtg
      361 gacacatcca aacagccttg tatgggaaga tgggaagggt gaggtcacca cacccatatg
      421 ggcaccggaa gttcatcacc atgtctgacg gagccacttc aacctttgac ctcttcgagc
      481 ccttggctga gcactgtgtg ggagatgatg ttaccatggt catctgccct ggaattgcca
      541 atcacagtga gaagcagtac atccgcacct ttgttgacta cgcccagaaa aatggctatc
      601 ggtgtgccgt gctgaaccac ctgggcgcct tgcccaacat tgaactgacc tcgccacgca
      661 tgttcaccta cggctgcacc tgggaatttg gagccatggt aaactacatc aagaagacat
      721 atcccctgac ccagctggtg gtcgtgggct ttagcctggg cggtaacatc gtgtgtaaat
      781 acttgggaga gacccaggcc aaccaagaaa aggttctgtg ctgcgtcagc gtgtgccagg
      841 gctacagtgc actgagggcc caggaaacct tcatgcagtg ggatcagtgc cggcgcttct
      901 acaacttcct catggccgac aacatgaaga aaattatcct ctcgcacagg caagctcttt
      961 ttggagacca tgttaagaaa cctcagagcc tggaggacac ggacttgagc cgcctctaca
     1021 cagccacatc cctgatgcag atcgacgaca atgtgatgag gaagtttcat ggctataact
     1081 ccctgaagga atattacgag gaagaaagct gcatgaggta cctgcacagg atttatgtac
     1141 ctctcatgtt ggtgaatgca gctgatgacc ccttggtgca tgaaagtctt ctaaccattc
     1201 caaaatctct ttcagagaaa cgggagaacg tgatgtttgt gctgcccctg cacgggggcc
     1261 acctgggctt ctttgagggg tccgtgctgt tccccgagcc cctgacatgg atggataagc
     1321 tggtggtgga gtacgccaat gccatttgcc aatgggaacg taacaagtcg cagtgctctg
     1381 acacggaaca ggtggaggcc gacctggagt gaggcagccc ccggactctg gtgcgcgcca
     1441 gctgccctgg tcaccggctg tttcaggtct cccatctccc tcagtgacct ggatctgacc
     1501 tcacaccatc aacggagacc acccactaga cacaccggac ttgaagtagg tggccgtccc
     1561 tgggagctcc aggctatttt tgtgcttagt tactggtttt ctccactgca ttgttagcca
     1621 tggtgacaag cgacggggtt ttcaccctcg tgtccggtgt cagcatctga ttgctttcaa
     1681 gccaattaca tctagtttcc ctattaaaaa tgtgtctgaa cagcagtttt gctttgccaa
     1741 tcagaaggct tttccccaag agcagtgaag gatgtatgtt attttgtggt ggtgtatgtg
     1801 tcctgacgta gaccctaaaa agagccaatg ctgtagatgc agctcagctt gggagccggg
     1861 gaccctgggc ctcccaggcc aagactgtag cctcctacgt ggcaaagaaa attcccttga
     1921 ctcacaaacc aagtttctcc ctcactgtcc tctaagacag ttttcccaca ggtgattctc
     1981 ctcaccaggc acatttgaga agcacgattg tgcagagcct ttaaattaga aacatctcgg
     2041 tagtttgtgt tgttgaaatt cgtagtcaga ggtatctctt agatcccagg agcctccaaa
     2101 gctgcaaggc ctatcttgta cggctgccct ggtgcgatcg ctatgtgatg tctcagaaag
     2161 ggcttgtgct gggggtgaag acttctcgcc atgcctgact ctgcctctca ctggctatat
     2221 gaccctggaa gagtcccttt gaacttttgt ttcttcacct gtaaaatggg ggacttgggc
     2281 caggtagatt gccgatacca ctaccagttc taaagttcaa tgacaaactc agtttactga
     2341 ggtttgagag aacacctctc caggggagcc tgagagctat tctaagcatg tagacgtcat
     2401 ttgcctttcc ttcttttttt ttatgtccct catttcatat aaagaggggg ttttttggtg
     2461 tttttttttt ttaaaccctc agttataatt ttattttttt aacccaggtc tttctaactc
     2521 tgacttttga taccaaacaa ttcaaaagtt ggatctgagt ttggagaaat atctttccaa
     2581 ctgaagaggg tgtgattttg aaaccagatt ttgtaatgta atagctcata tttgtagcgt
     2641 gttggacaga tctttccaga gtgttatctt ctcagatgaa aagtcactct acatttcaag
     2701 tactactttc ctccaatcct gtggtacttg aatatctaaa aaccctgcac tttgaaaaat
     2761 cagcagttgc tatctggaac taaacagaat tacaagtgaa atgacctata gatactttaa
     2821 aaaaaaaaaa ttcctggctt cctctccttt gctataggac agacaggaat gtaaatagtg
     2881 ggtctgtatg tggatgttta aggggtaaag ggagccacct gagggcctgg atgcagaccc
     2941 tcatggccgc aggtgaatgt agtttgggca tcggtccaag tcatgtgaca gtaatgtctg
     3001 taacctgaag aagttgtttt ctgacaatca ccaggtcatc ctaaataata acatcaaaaa
     3061 cagccgtacc tgaagagact gagacttcta tggtctcgac tttgcttcag tacaatttct
     3121 cacacacacc aaattcatca ttgtgacttt ccccccaagt tgttactttt caagtgcttt
     3181 tctttttcat gttcttttag tacaaattgg cactttatca tctacccctc aatttcgaag
     3241 ctagtctctc ccctctgtta cttttccctc caaccaacaa ccacagctat aatctagaag
     3301 gttcatggtc atatatcctg ccacaacctt cacgtctcaa gacctttttt tgtgaaatta
     3361 gatgaatgaa gcaataactt aatggggttg atcaccatcc caggaagcaa gaggctcctt
     3421 ttcatttgcc ttaggtcaca tcctttgatc tgttctgaca aagcagtggc caggtaccag
     3481 ctccattcag gaggagaaaa cagtcctgtt gtcgcacact tggcagggat gggggcagaa
     3541 gtcctcggag cctggtgtgc acggcagttc tggtggccca cggaggagag gcagggctcg
     3601 gggcacagcc tttgttgcca cataaccgga atttacccca cgggactgtg gagactgcct
     3661 cccagctgaa atctttttag tgtgtgactc tgaatggcac ttacattcca ttttggctca
     3721 catgaaatca actgaaggcc tctgttcaag ctccaggctc tcaggcatgg aaataacagt
     3781 gtaactgtgg ctatcttaca ggaaaattct tgtttgtccc tgaatgagag cacagaggca
     3841 ttgaatttac agagatgcga gctcgcctaa taaacaagga agcagcattt tatatgtagg
     3901 tcagcttttt ccttcctcca gctttccttg cttttccttc gttcctgatg ataatgtgag
     3961 ggctcttgct actgaggtcc tcttgggcta aaacaaggca gaattttcaa aaagtatttg
     4021 aatattatat tttaaaatca ggttaaaata caataaaatc aggttaagga tataaattgc
     4081 ggaaacctag acagttctat cgcaggaaga acatgttaaa aaccaagcag gggcttccct
     4141 ggtggcgcag tggatgagag tccgcctgcc gatgcagagg acacaggttc gtgccccggt
     4201 ccgggaggat cccacatgcc gcggagcggc tgggcccgtg agccatggcc gctgggcttg
     4261 tgcgtccgga gcctgtgctc cacaacggga gaggccacaa cagtgagagg cccgcgcaca
     4321 gcaaaaaaaa aaaaaaaaaa aaaaccaagc aggtttttaa cagctctccg ggtggttctc
     4381 cctgcctcta aacagtttaa agacagtgat gaagatccca gtcaagtcag gattatctga
     4441 cttgaaaaaa tggtctcaag tctccttgat gcatttatgt tagtagggag tttaacagac
     4501 ttgaggaaaa cctcttacct tcccgcccgt gtgtttgcac cagtgattcc agagcagaag
     4561 gaaggcagaa agttgtttgt tgtcactata ttctttgaac ctccccgcag cgttttacac
     4621 gtgagagtgg gaatatacct gcaaggggag catccctttc ttgacatggt gttagggaac
     4681 cagggtttgg gagacttgga ttcttgtcct gtctctaatt tacattggat tgtgggcaat
     4741 cacttcacct ctccgagctc caattacctc atcttagacc atctctaagt ctacttaatc
     4801 tacttacaca tcatttgcca gaacattccc gctggccttc ttacagccat tgcgagtgga
     4861 aacagataag tcaagacttc aggctgatct tgaggggact tggagagagg gagctactgc
     4921 attcagcctt tgctggtgaa gacccttgat tttgcccaaa gccctgtgtc tcttactggc
     4981 ttctcttcag agcctccatt gtcatctcaa tattctttct gtactgaggg tggtcttatg
     5041 actgggacag gtgctgacca ttggaacgag gtgaatgtcc ccatccttct gtgtgactcg
     5101 ggcaagcttt gagagttccc agggcagaaa ccctgcctgc tcagactttc attctaaaac
     5161 tacagtcttc attaaagctg aactttctgg gtagctgagc ttatatgcct ggcatctgaa
     5221 tgagagctct ctttgtcact gtgtggcttg agatccgttt tgccagctcc ggggaaacaa
     5281 tacatgtgtt cttgtttgtg tttgccgggc aagcagatgt ctgagctgtg agaggctttt
     5341 cttttcccgt ggcattgctt ctgacttagc actaaagtga agatcactga aacatcacgt
     5401 tgagttgaaa actcaggtct ttgtcgtcta aggcaggaca ggagagttat taagaagcat
     5461 ttcactgcag catccactca caatatcatc tggaattgtt ctctttgccc agaaagcctt
     5521 aacttgcctc tagaatatcc cctggtggta caacactata gtggctttgg aattcaaatt
     5581 attctgctgc agaagtctga agcaaagctg ccacaaaacc agaaaatgtc tccatgtggc
     5641 ctgtacgctc cttattacat taggtgcccc caccccttga caataagagc aatccagaac
     5701 tggccaaaca cctcatctct gatgcctttc ttccttcttg gcctcactct gttgttcaaa
     5761 gccactttgg atgcttcaaa aaaccatgaa aagtggcctg cctttggcat ttagaggcca
     5821 agcaattgag ggaaaggttt tcttctcccc cctgttacca aagcagaggg aagtgccccc
     5881 tcttcataaa ctaggattgc ttttgccaaa ttctatttga aggggaacag gcccgtactc
     5941 gcagtgagaa ctgggatgct atccaaagct acagctgctt cctcttgcct atgtcactgc
     6001 tgcaaccgcc tcggacgctg tagcccaggc atccccccga agtggccctt ggaagcaggc
     6061 tgcagagccc agctcgccag ccattctcag accccagacg gtagacagct gccccttttg
     6121 aaggagtcag ccccctacac acaccacgtt ttctgaacct tttttcctag catgtattgt
     6181 gggtaaaaca ttcacctatc tctaatgaat aagctgaagt taatttccaa ccagtgaatt
     6241 aagtccttta acttgactcc tgtcagttag taataaaacc tataacctgc cgtcttcccg
     6301 ttctggtcct cattagccaa gaaatctatc gccgtaagtt ggggacagtc cacgtatagc
     6361 acctgcagaa atacctttca tctcaatagg cattctcctt ccagaccacc cacatggagc
     6421 agccaacagt cacgtagaat aattgctgag ccctcagtcc cagcgccagc cactccctcc
     6481 cagtgggtgg accgagttcc tgggtgtggg agttaggctt ggtttggttt ttgctttggc
     6541 ctctttagtt ttcctaaagc acaagtccat gtagaatcct gtcacctctc cacaccagtt
     6601 tcaggtgatc tgggtctctc ccactgcctc aggaagacct tcactgtacc tgagcttttg
     6661 acttctgcca ctgcagctgc cttagcgaca ccaggggctg ggggcgtgga ggggggagcc
     6721 agtttgcatc tccccctttc ctggttagac ttccatgaac cccatgtttc tgttggcaga
     6781 tctgcttcca gactgatttt tgagaaccat cactttcaca ttcctaattt ttgtttgttt
     6841 tgtttgattt cttttttttt ggactttctg aaacttcaaa tgctgccctg aaaataatgt
     6901 atttttgagt ttgtgttctg aaagcctccg tgctggtgga ttgggggtgg gggaggcaga
     6961 atacaggatc ctccagcact gaggtgttta agatttgcaa ctagcaatgc aattttttct
     7021 aaatatgagg atatttacct ttattaagaa attaaacagt ggtgtccttg atcattttat
     7081 gttctcatat tacttttggt tctgttttga ttctgtgtgg tggtaaacaa agatcattac
     7141 aaacaaaaac tgtaattttg ttatctttga ttcaatggaa tttctttact taaaaaaata
     7201 aaaggctaaa aatgtgg
//
LOCUS       XR_004347787            1117 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746532
            (LOC116746532), transcript variant X1, ncRNA.
ACCESSION   XR_004347787
VERSION     XR_004347787.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1117
                     /gene="LOC116746532"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746532"
     ncRNA           1..1117
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746532"
                     /product="uncharacterized LOC116746532, transcript variant
                     X1"
                     /db_xref="GeneID:116746532"
ORIGIN      
        1 gggtggggct gggttccctt cctcttggtt gtttggcttg agacaatcca acacttgggc
       61 ctatctgggc tctttggtgg ggctaatggt ggattctggg agggctcatg ccaaggagta
      121 cttctcacaa cttctgctgc cagtgtcctt gtccccacgg tgagccacag ccaccaccca
      181 cctctgcagg agaccctcca acactaccag gtgtaggcaa ggatcacagg gctgagcaga
      241 atgtcctttt tttcaactgt ggtcccgtgg tcagcaatgg cagattctct ggctctccct
      301 ctgagaggcg cttggaaaaa gtaaggactg gtgcttcgtc atgaccgtca acagtgtgtt
      361 ccagtgccca tggtactgat ttcagaggac tgtcacatcc aggtgtgagc tgtgacactg
      421 tgtctctggc cgcctatcct acgctacgag caactttagg tgtctgtcag cctcaaggag
      481 gctctctttg tcccagcttc aaggaggcat taatctcaaa agcgagacag tgagctgaag
      541 tttcaattaa gtcttggtca ccaacatgat ttaaagacgg agatttgaaa agctgaagaa
      601 taaaagaagt ctatgcctgt gttaggaacc taggaaaggg cgagctgtat gcagtcttca
      661 cagaggcgag aactgtagtt ttaagagttc taaagaacat tccagtgggc ctgaaggtct
      721 tactagatga aaggttacgg aaggagtcgg ggtgcaattc agtcggactg gagtggaagc
      781 tgatccacct ggtaggacta gggcagaggc agctccaaga gaagggaaaa tccaaaggat
      841 gaagaacaca gatgctaccc agtggaatcc ctacctctta gcggcaaaca aagggaacgg
      901 tctccttcac cctttttggt ctgaatgagg gctcagcttt acctttgagt atccacccat
      961 ccttcctcag gcgcccaatg aggccgcagc ctcttcctga cgggcggtgt tgaactctcc
     1021 caggaaacgg acaggtacct cggaccaatg gttggagatg cgggggtcca atgggagaga
     1081 gaaatgggtc aacctggggt ttgagaatga gagagcc
//
LOCUS       XR_004347792             905 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746532
            (LOC116746532), transcript variant X2, ncRNA.
ACCESSION   XR_004347792
VERSION     XR_004347792.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..905
                     /gene="LOC116746532"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746532"
     ncRNA           1..905
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746532"
                     /product="uncharacterized LOC116746532, transcript variant
                     X2"
                     /db_xref="GeneID:116746532"
ORIGIN      
        1 gggtggggct gggttccctt cctcttggtt gtttggcttg agacaatcca acacttgggc
       61 ctatctgggc tctttggtgg ggctaatggt ggattctggg agggctcatg ccaaggagta
      121 cttctcacaa cttctgctgc cagtgtcctt gtccccacgg tgagccacag ccaccaccca
      181 cctctgcagg agaccctcca acactaccag gtgtaggcaa ggatcacagg gctgagcaga
      241 atgtcctttt tttcaactgt ggtcccgtgg tcagcaatgg cagattctct ggctctccct
      301 ctgagaggcg cttggaaaaa gtaaggactg gtgcttcgtc atgaccgtca acagtgtgtt
      361 ccagtgccca tggtactgat ttcagaggac tgtcacatcc aggtgtgagc tgtgacactg
      421 tgtctctggc cgcctatcct acgctacgag caactttagg tgtctgtcag cctcaaggag
      481 gctctctttg tcccagcttc aaggaggcat taatctcaaa agcgagacag tgagctgaag
      541 tttcaattaa gtcttggtca ccaacatgat ttaaagacgg agatttgaaa agctgaagaa
      601 taaaagaagt ctatgcctgt gttaggatga agaacacaga tgctacccag tggaatccct
      661 acctcttagc ggcaaacaaa gggaacggtc tccttcaccc tttttggtct gaatgagggc
      721 tcagctttac ctttgagtat ccacccatcc ttcctcaggc gcccaatgag gccgcagcct
      781 cttcctgacg ggcggtgttg aactctccca ggaaacggac aggtacctcg gaccaatggt
      841 tggagatgcg ggggtccaat gggagagaga aatgggtcaa cctggggttt gagaatgaga
      901 gagcc
//
LOCUS       XR_004347798             824 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746532
            (LOC116746532), transcript variant X3, ncRNA.
ACCESSION   XR_004347798
VERSION     XR_004347798.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..824
                     /gene="LOC116746532"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746532"
     ncRNA           1..824
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746532"
                     /product="uncharacterized LOC116746532, transcript variant
                     X3"
                     /db_xref="GeneID:116746532"
ORIGIN      
        1 gggtggggct gggttccctt cctcttggtt gtttggcttg agacaatcca acacttgggc
       61 ctatctgggc tctttggtgg ggctaatggt ggattctggg agggctcatg ccaaggagta
      121 cttctcacaa cttctgctgc cagtgtcctt gtccccacgg tgagccacag ccaccaccca
      181 cctctgcagg agaccctcca acactaccag gaggcattaa tctcaaaagc gagacagtga
      241 gctgaagttt caattaagtc ttggtcacca acatgattta aagacggaga tttgaaaagc
      301 tgaagaataa aagaagtcta tgcctgtgtt aggaacctag gaaagggcga gctgtatgca
      361 gtcttcacag aggcgagaac tgtagtttta agagttctaa agaacattcc agtgggcctg
      421 aaggtcttac tagatgaaag gttacggaag gagtcggggt gcaattcagt cggactggag
      481 tggaagctga tccacctggt aggactaggg cagaggcagc tccaagagaa gggaaaatcc
      541 aaaggatgaa gaacacagat gctacccagt ggaatcccta cctcttagcg gcaaacaaag
      601 ggaacggtct ccttcaccct ttttggtctg aatgagggct cagctttacc tttgagtatc
      661 cacccatcct tcctcaggcg cccaatgagg ccgcagcctc ttcctgacgg gcggtgttga
      721 actctcccag gaaacggaca ggtacctcgg accaatggtt ggagatgcgg gggtccaatg
      781 ggagagagaa atgggtcaac ctggggtttg agaatgagag agcc
//
LOCUS       XM_032618116            1195 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 198
            (CCDC198), transcript variant X1, mRNA.
ACCESSION   XM_032618116
VERSION     XM_032618116.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1195
                     /gene="CCDC198"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746570"
     CDS             105..989
                     /gene="CCDC198"
                     /codon_start=1
                     /product="uncharacterized protein CCDC198 isoform X1"
                     /protein_id="XP_032474007.1"
                     /db_xref="GeneID:116746570"
                     /translation="MGLSHSKAHPRVTKVAPLQNKEEETPSAGPVDFVFTENPEEESS
                     YSFARLEERNKALEGRLPPLRETWYGRYSAGPRAMYFDIPLEQGETSIIKRHPPQRLQ
                     KLEPIDLPQVITSERLLSQEEAGRTHKAKQELEKKMQTLMYPSGKRQYLHKMQMLEMN
                     RKRQEAQVELKTSLHKEARTNKQKQRDHKVKKILQSIPRNDDGDFLTLLPDETLNRSP
                     ENTQSAEFLEHQASNDYCPQKIGKLETWFREREARGQLLWDSSSSDSDELGKDEKKPR
                     ALVRTRTERIPLSDEFFD"
     misc_feature    105..986
                     /gene="CCDC198"
                     /note="Domain of unknown function (DUF4619); Region:
                     DUF4619; pfam15398"
                     /db_xref="CDD:464705"
ORIGIN      
        1 tttagagctg ggttaacttc agaaatccct tgattaaaac aagctatatt aaaggcccca
       61 aaccactaac ctcatggttt tacactgagt gtctttaatg tgaaatgggc ctgagccact
      121 ctaaagctca cccaagggtg accaaggtag cacctttgca aaacaaagag gaagagactc
      181 cctcagccgg ccctgtggac tttgtattca ctgagaatcc agaagaagag agttcatatt
      241 catttgcaag actggaggaa cggaataaag ctttggaagg gcggttgcca cctctaagag
      301 agacctggta tggaagatat tctgcaggac cgagggccat gtattttgac atcccactgg
      361 aacagggaga aacaagtatt attaaaaggc atccacccca aagacttcaa aagcttgaac
      421 ccattgacct gccacaagta attacttctg aaaggctcct gagccaggaa gaagctggga
      481 ggactcacaa agccaagcag gaactggaaa agaagatgca aactctaatg tatccttctg
      541 ggaaaagaca gtatttacat aagatgcaaa tgctggaaat gaaccgtaaa agacaagagg
      601 cccaagtgga attgaagaca agtcttcaca aggaggcaag aactaataag cagaaacaga
      661 gggaccacaa agtcaagaaa atccttcaaa gcatcccaag aaatgacgac ggtgactttc
      721 taaccttgtt gcctgatgaa accttgaaca gaagtccaga aaatacacag agtgcagaat
      781 ttctggaaca tcaagcaagt aatgactatt gtccccagaa aattggcaaa ttggaaacat
      841 ggttccgtga acgagaggct cgtggacagc ttctctggga cagttccagc tctgactcag
      901 atgagttggg gaaagacgag aagaaaccac gagcactggt gagaaccagg acagagagaa
      961 ttccactttc tgacgagttt tttgattgag aataataata ctattcacta acctagatac
     1021 tgagtgcact gaaagcttac tttcctttaa aaagtctcca aggtagtata tgaactattt
     1081 tgaggacacc aattcacttt cttttcattt tgaaatccta agattaaaca tgtgagatat
     1141 attgttaatt atactacata actgactgcc tcaaaactta ggggcttaaa taaca
//
LOCUS       XM_032618117            1192 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 198
            (CCDC198), transcript variant X2, mRNA.
ACCESSION   XM_032618117
VERSION     XM_032618117.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1192
                     /gene="CCDC198"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746570"
     CDS             105..986
                     /gene="CCDC198"
                     /codon_start=1
                     /product="uncharacterized protein CCDC198 isoform X2"
                     /protein_id="XP_032474008.1"
                     /db_xref="GeneID:116746570"
                     /translation="MGLSHSKAHPRVTKVAPLQNKEEETPSAGPVDFVFTENPEEESS
                     YSFARLEERNKALEGRLPPLRETWYGRYSAGPRAMYFDIPLEQGETSIIKRHPPQRLQ
                     KLEPIDLPQVITSERLLSQEEAGRTHKAKELEKKMQTLMYPSGKRQYLHKMQMLEMNR
                     KRQEAQVELKTSLHKEARTNKQKQRDHKVKKILQSIPRNDDGDFLTLLPDETLNRSPE
                     NTQSAEFLEHQASNDYCPQKIGKLETWFREREARGQLLWDSSSSDSDELGKDEKKPRA
                     LVRTRTERIPLSDEFFD"
     misc_feature    105..983
                     /gene="CCDC198"
                     /note="Domain of unknown function (DUF4619); Region:
                     DUF4619; pfam15398"
                     /db_xref="CDD:464705"
ORIGIN      
        1 tttagagctg ggttaacttc agaaatccct tgattaaaac aagctatatt aaaggcccca
       61 aaccactaac ctcatggttt tacactgagt gtctttaatg tgaaatgggc ctgagccact
      121 ctaaagctca cccaagggtg accaaggtag cacctttgca aaacaaagag gaagagactc
      181 cctcagccgg ccctgtggac tttgtattca ctgagaatcc agaagaagag agttcatatt
      241 catttgcaag actggaggaa cggaataaag ctttggaagg gcggttgcca cctctaagag
      301 agacctggta tggaagatat tctgcaggac cgagggccat gtattttgac atcccactgg
      361 aacagggaga aacaagtatt attaaaaggc atccacccca aagacttcaa aagcttgaac
      421 ccattgacct gccacaagta attacttctg aaaggctcct gagccaggaa gaagctggga
      481 ggactcacaa agccaaggaa ctggaaaaga agatgcaaac tctaatgtat ccttctggga
      541 aaagacagta tttacataag atgcaaatgc tggaaatgaa ccgtaaaaga caagaggccc
      601 aagtggaatt gaagacaagt cttcacaagg aggcaagaac taataagcag aaacagaggg
      661 accacaaagt caagaaaatc cttcaaagca tcccaagaaa tgacgacggt gactttctaa
      721 ccttgttgcc tgatgaaacc ttgaacagaa gtccagaaaa tacacagagt gcagaatttc
      781 tggaacatca agcaagtaat gactattgtc cccagaaaat tggcaaattg gaaacatggt
      841 tccgtgaacg agaggctcgt ggacagcttc tctgggacag ttccagctct gactcagatg
      901 agttggggaa agacgagaag aaaccacgag cactggtgag aaccaggaca gagagaattc
      961 cactttctga cgagtttttt gattgagaat aataatacta ttcactaacc tagatactga
     1021 gtgcactgaa agcttacttt cctttaaaaa gtctccaagg tagtatatga actattttga
     1081 ggacaccaat tcactttctt ttcattttga aatcctaaga ttaaacatgt gagatatatt
     1141 gttaattata ctacataact gactgcctca aaacttaggg gcttaaataa ca
//
LOCUS       XM_032618118            1093 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus coiled-coil domain containing 198
            (CCDC198), transcript variant X3, mRNA.
ACCESSION   XM_032618118
VERSION     XM_032618118.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1093
                     /gene="CCDC198"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746570"
     CDS             105..887
                     /gene="CCDC198"
                     /codon_start=1
                     /product="uncharacterized protein CCDC198 isoform X3"
                     /protein_id="XP_032474009.1"
                     /db_xref="GeneID:116746570"
                     /translation="MGLSHSKAHPRVTKVAPLQNKEEETPSAGPVDFVFTENPEEESS
                     YSFARLEERNKALEGRLPPLRETWYGRYSAGPRAMYFDIPLEQGETSIIKRHPPQRLQ
                     KLEPIDLPQVITSERLLSQEEAGRTHKAKAQVELKTSLHKEARTNKQKQRDHKVKKIL
                     QSIPRNDDGDFLTLLPDETLNRSPENTQSAEFLEHQASNDYCPQKIGKLETWFREREA
                     RGQLLWDSSSSDSDELGKDEKKPRALVRTRTERIPLSDEFFD"
     misc_feature    105..884
                     /gene="CCDC198"
                     /note="Domain of unknown function (DUF4619); Region:
                     DUF4619; pfam15398"
                     /db_xref="CDD:464705"
ORIGIN      
        1 tttagagctg ggttaacttc agaaatccct tgattaaaac aagctatatt aaaggcccca
       61 aaccactaac ctcatggttt tacactgagt gtctttaatg tgaaatgggc ctgagccact
      121 ctaaagctca cccaagggtg accaaggtag cacctttgca aaacaaagag gaagagactc
      181 cctcagccgg ccctgtggac tttgtattca ctgagaatcc agaagaagag agttcatatt
      241 catttgcaag actggaggaa cggaataaag ctttggaagg gcggttgcca cctctaagag
      301 agacctggta tggaagatat tctgcaggac cgagggccat gtattttgac atcccactgg
      361 aacagggaga aacaagtatt attaaaaggc atccacccca aagacttcaa aagcttgaac
      421 ccattgacct gccacaagta attacttctg aaaggctcct gagccaggaa gaagctggga
      481 ggactcacaa agccaaggcc caagtggaat tgaagacaag tcttcacaag gaggcaagaa
      541 ctaataagca gaaacagagg gaccacaaag tcaagaaaat ccttcaaagc atcccaagaa
      601 atgacgacgg tgactttcta accttgttgc ctgatgaaac cttgaacaga agtccagaaa
      661 atacacagag tgcagaattt ctggaacatc aagcaagtaa tgactattgt ccccagaaaa
      721 ttggcaaatt ggaaacatgg ttccgtgaac gagaggctcg tggacagctt ctctgggaca
      781 gttccagctc tgactcagat gagttgggga aagacgagaa gaaaccacga gcactggtga
      841 gaaccaggac agagagaatt ccactttctg acgagttttt tgattgagaa taataatact
      901 attcactaac ctagatactg agtgcactga aagcttactt tcctttaaaa agtctccaag
      961 gtagtatatg aactattttg aggacaccaa ttcactttct tttcattttg aaatcctaag
     1021 attaaacatg tgagatatat tgttaattat actacataac tgactgcctc aaaacttagg
     1081 ggcttaaata aca
//
LOCUS       XM_032618120            3430 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mex-3 RNA binding family member B
            (MEX3B), mRNA.
ACCESSION   XM_032618120
VERSION     XM_032618120.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3430
                     /gene="MEX3B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 12
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746606"
     CDS             332..2059
                     /gene="MEX3B"
                     /codon_start=1
                     /product="RNA-binding protein MEX3B"
                     /protein_id="XP_032474011.1"
                     /db_xref="GeneID:116746606"
                     /translation="MPSSLFADLERNGSGGGGGGGGGGGGGGGSGGGETLDDQRALQL
                     ALDQLSLLGLDSDEGASLYDSEPRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRA
                     KTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNTALNGAVP
                     GPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGM
                     PENVDRAREEIEAHIALRTGGIIELTDENDFHANGTDVGFDLHHGSGGSGPGSLWSKP
                     TPSITPTPGRKPFSSYRNDSSSSLGSASTDSYFGGGTSGSAAATPRLADYSPPSPALS
                     FAHNGNNNNGNGYTYTAGEASVPSPDGCPELQPTFDPAPAPPPGAPLLWAQFERSPGG
                     GPAAPVSSSCSSSASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSCPRLSPP
                     LHMAPGAGEHHLARRVRSDPGGGGLAYAAYANGLGAQLPGLQPSDTSGSSSSSSSSSS
                     SSSSSSGLRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTA
                     VTQAIRIFS"
     misc_feature    551..769
                     /gene="MEX3B"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in the family of MEX-3 RNA-binding proteins; Region:
                     KH-I_MEX3_rpt1; cd22423"
                     /db_xref="CDD:411851"
     misc_feature    order(578..583,587..595,599..613,617..625,632..634,
                     650..670,752..757,764..769)
                     /gene="MEX3B"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:411851"
     misc_feature    827..1042
                     /gene="MEX3B"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in the family of MEX-3 RNA-binding proteins; Region:
                     KH-I_MEX3_rpt2; cd22424"
                     /db_xref="CDD:411852"
     misc_feature    order(863..865,869..877,881..895,902..907,914..916,
                     932..952,1037..1039)
                     /gene="MEX3B"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:411852"
     misc_feature    1883..2056
                     /gene="MEX3B"
                     /note="RING finger, HC subclass, found in RNA-binding
                     protein MEX3B; Region: RING-HC_MEX3B; cd16721"
                     /db_xref="CDD:438381"
ORIGIN      
        1 gctgtcgctc gcctgctcgc ttctcgctcg gcattgtggc cagccagccg ggcacttggt
       61 gggcacgcgc ggccgccgct cgagctctgc ccccacccca cccgccagca gatctggggt
      121 ggggacccag gcgggggctc ccgcagccac tgcccggcgt ggaccgcaag gagcgaccca
      181 ctcttcccgg cgccgagaaa ggagcaacgg agccctctgc agccggctgg cctctccgcc
      241 cctgaccact cgcttcccgg ctgcctttgt ggccgcagtt tctcgccgcc gagcagaggg
      301 ccggcggggg cgcggtgcgc acggccgagc gatgcccagc tcgctgtttg cagacctgga
      361 gcgcaacggc agcggcggcg gcgggggagg cggcggcggg ggaggcggcg gcggcggcag
      421 cggcggggga gagaccctgg atgaccaaag agccctgcag ctcgctctcg accagctctc
      481 cctgctgggg ctggacagtg acgagggcgc gtctctgtac gacagcgagc cgaggaagaa
      541 gagcgtgaac atgaccgagt gcgtgccggt gcccagttcc gagcatgtcg ccgagatcgt
      601 ggggcggcaa ggttgtaaaa tcaaagcact gcgggcgaag accaacactt atatcaagac
      661 cccagttcgt ggggaggagc ctgtctttgt tgtgacgggc aggaaggagg atgtggccat
      721 ggctcggagg gagatcatct ctgccgccga gcacttctcc atgatccgcg cctcgcggaa
      781 taagaacacg gcgctcaacg gcgcagtgcc cgggccgcct aacctgccgg ggcagaccac
      841 catccaggtg cgggtgccct accgcgtggt ggggctcgtg gtggggccca agggcgccac
      901 gatcaagcgc atccagcagc agacgcacac gtacatcgtg acgcccagcc gcgacaagga
      961 gccggtgttc gaggtgaccg gcatgcctga gaacgtggac cgagctcgcg aggagatcga
     1021 ggcgcacatc gccctgcgca ctggcggcat cattgagctc acagatgaga acgacttcca
     1081 cgccaatggc actgatgtgg gctttgatct gcatcatggg tccggcgggt ccggcccagg
     1141 cagcctgtgg agcaagccca cccccagcat tacgcccact ccgggccgca agcccttctc
     1201 tagttatcgc aacgacagct ccagctcgct tggcagcgcc tccacagact cttacttcgg
     1261 cggggggacc agcggcagtg cagctgccac cccgcgcctg gcggactata gtccccccag
     1321 ccccgcgctc agctttgctc acaatggaaa caacaacaat ggcaatggat acacctacac
     1381 ggcgggggag gcttctgtgc cttcccctga cggctgtcct gagctacagc ccaccttcga
     1441 cccggctccc gccccaccgc ctggggctcc acttctctgg gcccagtttg agaggtcccc
     1501 gggaggcgga cctgcagctc ccgtgtcctc ttcctgctct tcctctgcat cttcgtctgc
     1561 ttcgtcttcc tctgtggtct ttcccggggg cggcgccagc gcgccctcca acgccaacct
     1621 ggggttgctg gtgcaccgcc ggctgcaccc gggcaccagc tgcccccgtt tgtccccgcc
     1681 cttgcacatg gctccggggg cgggcgagca ccacctggcg cgccgggtgc gcagcgaccc
     1741 gggcggaggg ggcctggcct acgccgccta tgccaacggc cttggggcgc agctgccggg
     1801 cctgcagccg tcggacacat ccggctcctc gtcctcgtcc agctcctcgt ccagctcttc
     1861 atcctcctcc tctgggttgc ggcgtaaggg cagccgtgac tgctccgtgt gctttgagag
     1921 cgaagtaatc gccgcactgg tgccctgcgg ccacaacctc ttttgcatgg agtgcgccaa
     1981 ccgcatctgt gagaagagtg agcctgaatg cccggtctgc cacaccgcgg tcactcaggc
     2041 catccgcatc ttttcttgaa ggcggcgcgc accacgcggg ggatggagaa cccgcttccc
     2101 tccatcctca ctccccagcg cctctttgcc tacttggtgc cccaccttct cctccccgcc
     2161 tccctgctca cactctgaga tccgaagagg agcttggaaa gctgtagtat ccgctcattt
     2221 tttaaatttc aatttttaaa caaaggaact tgccaggata tctgcgtcaa gagtactgta
     2281 gcctgggaaa cctccgaacc accttaaatg catgctctat aaataatagg aacggcgaca
     2341 ttctagtaat gatagttttt acactgtact taataggaag cttccaaaag aagaaaaccc
     2401 cacaagtttt ccattttctt aaagtaggaa aaaatgaaca ataattatta tgatgaagat
     2461 ggtaataata gtgctatggg atgtgtggac tgttttagtg tgttcccctt tgtggctggg
     2521 ttcctacgat gcttattata gaacacagtg gatccttttt gaatgttcgt ggaagggcca
     2581 ggagttcctg tgaaaccagg atactgcagc tttattaaag ttaaagaaac tgtaacatat
     2641 ctcttatata ttaaaaaacg tttaaaagtt ttaaagagaa attgcattat acagattgaa
     2701 gtattttatt cttttttgac ttgaaaaatt atatttcata ttgcaaagat gtttacaagt
     2761 attttaattt aagttcagtg aacttttttg tagctgggtt aaatcttttt attttagtat
     2821 ggccttatgg caaagaacac tgtattattt taataatcac acaattgtga cggaattaca
     2881 aaccataaaa tgtgtaatgt tttgaacagt attctgttgg gatggagatt ttataggttc
     2941 agacaaatct tctagatctg cttcacccag catattttct attcagtgat ataaagcata
     3001 ttttattcta tattattaca aaaaacggaa atgtataaac atgtcaaaag gaactgttga
     3061 tgctttctaa catttgtata aatagaattc agtgcaagtt acaaaaattc tgttgcacca
     3121 ctatagtttt agtatttcta ttttaataca tttgtttacc acttgtttat gtatatgtag
     3181 gtgatgttac ttgagcttaa atgtacttta ctgagcaaag tttaaaaaaa caaagtatat
     3241 tttattttat gataaagggc ctttaacctc atggtcaaat actaatatta tatttgctga
     3301 gacaagattt gaaattgtat caagagtttt atttttctga catttaaagt tctacataat
     3361 aaaggtaaaa cttaagtaat ggtgctactt cattttttaa gtatttctat ataaataaaa
     3421 tattgaagaa
//
LOCUS       XM_032618125            6077 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dispatched RND transporter family member
            2 (DISP2), mRNA.
ACCESSION   XM_032618125
VERSION     XM_032618125.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               VOSU01000015.1     93718955-93719070   c
            117-446             VOSU01000015.1     93713649-93713978   c
            447-476             VOSU01000015.1     93713320-93713349   c
            477-600             VOSU01000015.1     93713047-93713170   c
            601-716             VOSU01000015.1     93712658-93712773   c
            717-844             VOSU01000015.1     93712417-93712544   c
            845-942             VOSU01000015.1     93711950-93712047   c
            943-4176            VOSU01000015.1     93707460-93710693   c
            4177-6077           VOSU01000015.1     93705557-93707457   c
FEATURES             Location/Qualifiers
     source          1..6077
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6077
                     /gene="DISP2"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 Proteins, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746622"
     CDS             4..4284
                     /gene="DISP2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein dispatched homolog
                     2"
                     /protein_id="XP_032474016.1"
                     /db_xref="GeneID:116746622"
                     /translation="MDGGSGSGSNDPAPGPGPEGEQRPEGEPLAPDGRSPDRSQSKAV
                     APEASPERSCALHSCPLEDPSSSSGPPPATSTLHPVGPSSPLAPTHFTYPRAPQEYRG
                     GSSLPGLGDRAALCSHGSSLSPSPAPSQHDGAWKPASVQHHVVSVRQVRAFQMPKSYS
                     QLIAEWPVAVLLLCLAVILLCTLAGLLGGQLPDFSKPLLGFEPRDTDIGRKLVVWRAL
                     QSLTGPKKLLSLSPDLELNSSNPHTTLSPTPWSSAQEGMVRPRRMVEPLEARGQESFF
                     CGPPEKSYAQLVFMSTSAGSLWNLHAIHSMCRMEQDQVRSHASFGALCQRTAANECCP
                     SWSLGNYVAVLSNRSSCLDTTQADTARTLALLRACALYYHRGALVPSCLGPGKDKPPR
                     CAQVPTKCSRSSAVYQLLHFLLDRDFLSPQTADYQVPSLKYSLLFLPTPKGASMMGIY
                     LDRLAVPWGLSDNYTSITGMDLGLKQELLRHYLAQDTVYPLLALAAIFLSIALYLRSL
                     FLTLMVLLGVLGSLLLAFFLYRVAFRMAYFPFVNLAALVLLSSVCANHTLIFFDLWRL
                     SKSQLPSGGLAQRVGRTMHHFGYLLLVSGLTTGAAFYASYLSRLPAVRCFALYMGTAV
                     LAHLALTLAWLPSSAVLHERYLARGCAARARGPWGGSTPRRLALALHRRLRGLRRAAA
                     STSRLLFQRLLPCGVIKFRYIWICWFAALAAGGAYIAGVSPRLRLPTLPPPRGQVFRP
                     SHPFERFDAEYRQQFLFERLPQGEGGHMPVVLVWGILPVDTGDPLDPRSNSSLVSDPA
                     FSASGPEAQRWLLALCQGARNQSFFGAQPEGWPTLCFVEALRRWMESPGCARLGPGLC
                     CGHSGFPWPPQLFLHCLKMMALEQGPESTRDLGARFNTQGGLAALVLQFQTNFQYSPD
                     YSQAHHFYTEVSYWLAAELGRAPPGLRRGWFTSRLELYSLQHSLSTEPAVVLGLALAL
                     AFATLLLGTWNVPLSLFSVAAVAGTVLLTVGLLVLLEWQLNTAEALFLSASVGLSVDF
                     TVNYCISYHLCPHPDRLSRVAFSLRQTSCATAVGAAALFAAGVLMLPASVLLYRKLGI
                     VLMMVKCVSCGFASFFFQSLCCFFGPEKNCGQILWPCAHLPWDAGTGEPGGEKAGRQR
                     PGPVGGAPGSCPEQYELQPLARRRSPSFDTSTATSKLSHRPSVLSEDLQLHDGPCCSR
                     LPPAPTSPREVFLDHQALFSQCPALQTSSPYKQAGPSPKTRARQDSQGQKAEPVQASP
                     EAPAHSPKPKPQVAEPPDCLCSSASTLEGLSVSDETCLSTSEPSARVPDSVGASPEDL
                     DETEQTVPERGQLNGKRDTLWLALRETVYDPSLPASHQSSSSWKGRGGPGDGSPVVLP
                     NSQPDLPDVWSAQPSTHTSGYSKLRGAPRGRTGAPEPVGGDKAGAAAG"
     misc_feature    <1402..>2433
                     /gene="DISP2"
                     /note="Predicted exporter protein, RND superfamily
                     [General function prediction only]; Region: MMPL; COG1033"
                     /db_xref="CDD:440656"
     misc_feature    3562..>4248
                     /gene="DISP2"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
ORIGIN      
        1 ggcatggacg gcggtagcgg cagcggcagc aacgatccgg ctcccggccc gggtccggaa
       61 ggggagcagc ggcccgaggg ggagcctttg gctccagacg gcaggtcccc ggacaggtcc
      121 cagagcaagg ctgtggcccc tgaggcaagc ccagagagaa gctgcgccct ccacagctgc
      181 ccccttgagg acccttccag ttcttcagga cccccaccag caacctccac ccttcatcct
      241 gtgggcccat ccagcccctt ggcccctacc cactttacct atccccgggc accacaggaa
      301 taccgggggg gcagctccct tccagggctt ggggaccggg cagcgctgtg ctcccatggc
      361 tccagcctca gcccttcccc agccccctca cagcatgatg gggcctggaa gccggcatct
      421 gtgcagcacc atgtggtcag cgtcaggcag gtacgggcct tccagatgcc aaagagctat
      481 tcccagctga ttgctgagtg gccagtggcc gtgctgctgc tgtgtctggc tgtcatcctc
      541 ctctgcaccc tggctggact gctggggggc cagctacccg atttctccaa gcccttactg
      601 ggctttgagc ctcgggacac ggacattggg cgcaagctag tggtctggag agcgctgcag
      661 tccctcacag gccccaagaa gctgctttcc ctttctccag accttgagct gaacagctca
      721 aacccccata ccactctgag ccccacaccc tggagcagtg cccaggaggg catggtccgg
      781 cctcggagga tggtggagcc cctggaggcc agagggcagg agagcttctt ctgtggcccc
      841 cctgagaaga gctatgcaca gctggtgttc atgtccacct cagcgggcag cctgtggaac
      901 ctgcacgcca tccattccat gtgtcgcatg gaacaggatc aggtccgctc ccatgccagc
      961 tttggggctc tgtgccagcg tacagcagcc aacgagtgct gccccagttg gtccctgggc
     1021 aactatgtgg ccgtgctctc caatcgttcc tcctgcctgg acactactca agccgacaca
     1081 gcccgcacgc tagccctgct gcgggcctgt gccctctact atcaccgtgg tgccctggtg
     1141 ccctcttgtc tgggacccgg gaaggacaag cccccgcgct gtgcccaggt tcccaccaag
     1201 tgctcccgga gcagtgctgt ctaccaactc ctgcacttcc tgctggacag ggactttctg
     1261 agtccccaga cggctgacta ccaggtgccc tccctcaagt acagcctgct cttcctgccc
     1321 accccgaagg gtgcctccat gatgggcatc tacctggacc gcctagctgt gccctggggg
     1381 ctctccgaca actacacatc catcactggc atggacctgg gcctcaagca ggagctgctg
     1441 aggcactacc tggcccagga tacggtgtac cccttgctgg ccctggccgc catcttcctc
     1501 agcatcgccc tctacctgcg ctccctcttc ctcacactca tggtgctact gggggtgctg
     1561 ggctccctgc tgcttgcctt ttttctttac cgagtggcct tccggatggc ctacttcccc
     1621 ttcgtcaatc tggcggccct tgtcctgctg agcagcgtct gcgctaacca caccctcatc
     1681 ttcttcgacc tctggcgcct cagcaagagc cagctgccct ccggggggct ggcgcagcgc
     1741 gtgggccgca ccatgcacca cttcggctac ctgctgctag tctcgggcct caccacgggc
     1801 gcggctttct acgccagcta cctgagccgc ctccccgccg tccgctgctt cgcactctac
     1861 atgggcacgg ctgtgctggc gcacctggcg ctcacgctgg cctggctgcc ctcctccgcg
     1921 gtgctccacg agcgctacct agctcgcggc tgtgcggccc gggcgcgcgg cccgtggggc
     1981 ggcagcacgc cccggcgact ggcgctggcg ctgcaccggc ggctccgcgg gcttcggagg
     2041 gcggccgcca gcacctcgcg cctgctcttc cagcgcctcc tgccctgcgg cgtcatcaag
     2101 ttccgctaca tctggatctg ctggttcgcc gcgctggcgg cggggggcgc ctacatcgct
     2161 ggcgtcagtc cccgcctgcg gctgcccacg ctgccgccgc cccgcggcca ggtcttccgg
     2221 cccagccacc ccttcgaacg cttcgacgct gagtaccgtc agcagtttct gttcgagcgg
     2281 ctgcctcagg gtgagggcgg ccacatgcct gtggttttgg tgtggggcat cctgccggtg
     2341 gacactggcg accccctgga ccctcgcagc aacagctctc tggtgagtga ccctgccttc
     2401 tcggccagcg gtcctgaggc gcagcgctgg ctgctggcac tctgccaggg agctcggaat
     2461 cagagcttct ttggggccca gccagagggc tggcccacgc tgtgcttcgt ggaggccctc
     2521 cggcgctgga tggagagccc cggttgcgcc cgcctggggc ctggcctctg ctgtggccac
     2581 tcgggcttcc cctggccccc ccagcttttc ctgcactgcc tcaagatgat ggctctggag
     2641 caaggccccg agagcacccg ggacctggga gcccgcttca atacccaggg cggcctggct
     2701 gccctggtcc tgcagttcca gaccaacttc cagtatagtc cagactacag ccaggcccac
     2761 cacttctaca ctgaggtcag ctactggctg gcagcagagc tgggcagggc accccccggc
     2821 ctgcgccggg gttggttcac cagccgtctg gagctgtaca gcctgcagca cagcctgagc
     2881 accgagcctg ctgtggtgct gggcctggcc ctggcgctgg cctttgccac actgctgctg
     2941 ggcacctgga atgttccact tagcctgttc tctgtggcag ccgtggcagg caccgtgctg
     3001 ctcacggtgg ggctcctggt tctactcgag tggcagctca acactgctga agccctcttt
     3061 ctctctgcct ctgtgggcct ctcggtcgac ttcaccgtca actactgcat ctcctatcac
     3121 ctgtgcccac accctgaccg cctgagccgc gtggccttct cgctgcgcca gaccagctgc
     3181 gccacggcag tgggggctgc agccctgttt gcagccggtg tgctcatgct gcctgcctcg
     3241 gtgttgctct atcgcaagct gggcatcgtc ctcatgatgg tgaagtgcgt cagctgcggc
     3301 ttcgccagct tcttcttcca atctctctgc tgtttctttg gaccagagaa gaactgtggg
     3361 caaatcctct ggccttgtgc ccacctgcca tgggacgccg gaactgggga gcctggaggg
     3421 gagaaggcag gccgccaacg accagggcca gtgggagggg cgcctgggtc ctgtccagag
     3481 cagtacgagt tacagcccct ggcacgacgc cggagtccca gctttgacac tagtacagcc
     3541 accagcaagc tgtcccaccg gccctcagtg ctctctgagg atctacagct gcatgatggc
     3601 ccctgctgct cccggctccc accagcccct acctccccaa gggaggtgtt cctggaccac
     3661 caggcgctct tcagccagtg cccagccctg cagacctcct ccccctataa gcaggctggc
     3721 cccagcccca aaacccgggc caggcaggac tcccaagggc agaaggctga gcccgtgcag
     3781 gcatcaccag aagccccagc ccactccccc aagcccaagc cccaggtcgc agagcctcct
     3841 gattgcctct gctcctcagc cagcaccctg gaggggctca gtgtctctga cgagacctgc
     3901 ctaagcacct ctgagcccag tgcccgtgtg ccagattctg tgggtgcctc tccagaggac
     3961 ctggatgaaa ctgagcaaac agtacctgag cggggccagc tgaatgggaa gcgggacacg
     4021 ctgtggctgg cgctgaggga gaccgtgtac gatccgtcac tgcctgcctc ccaccagagc
     4081 agctcgtcct ggaagggccg tggcgggcca ggggatggca gccctgtggt gctgcccaac
     4141 agccagccag atctgccaga cgtttggagt gcgcagccca gcacccacac ttcaggctac
     4201 agcaagctga ggggggcccc gagaggccgg actggggccc cagagcctgt cgggggtgac
     4261 aaggcagggg cagcagcagg ctagagcctg ttggtgtttt cctcacatca gcgggagggg
     4321 tctcactctc cagctgtgga ttttaaaacc ctgccagatg atccagcctt ggtaggggct
     4381 tctgcttcct ccccacatct agaggattca gtggaggggt acggggtggg gtggtctttg
     4441 gagtgaaacg ccaagctctc cttgtgacct gctaagggct cgtctgcccc acagtgccaa
     4501 ccaggaccca ccctctggaa cggggaaggc cacaggtata gctccatata tcagaggagg
     4561 ctgacctggc ccccatgcca agtgacaaga aggtcagtgg gactaaggga cccattcctt
     4621 gggaccctgc cagggcacct caccaaccaa aagagccctg ggaagcctca gcagcctcct
     4681 ggacccacac ctttcagagg ctttttatca ggacacttcc ttctctttgg ggatcctctc
     4741 tcgggccaga attgggctgg gccctctgtc cttaactaac ctgtgctcct cacagtcctc
     4801 agtctgacca ggaatttgtc aagaccaggc agagatggct gctggcagtg aagtggagga
     4861 ggaggaatgg tcagcctcag agcaccccta aattgctgat ggcccctcat ggggggctgc
     4921 attgacatgg aagggtcctc tcccctgtta acaacaataa gaatccttta cgtcctgcat
     4981 cttttagttt gcagaacact tccacaccca tcgtgtcctg ggaatctcac cacttctgtg
     5041 tggggtagcc tacagttggt caggtcctct tgccgccagt ttacaggtaa agacattgag
     5101 actaggtaag gttgagtgat ttacacaaag tcgcgtggct agtaaatggc agaacaggct
     5161 tcctgactca ttccaccaca aactgccact ctcctctgtc tacctgcccc aggggacgtt
     5221 ggcctggggc tgtcttgatc tttggtctct gacaccctct aacaacctgc cttcgcagat
     5281 gcctctcagt aaactcccct ccttcctcac tttaggcctc catctcccag aaagagctac
     5341 gttctgagca agcctggggt tcctccccat ctccctcgtg cttccctcca gctccagccg
     5401 agaagcctac catccatgag gcatcctggc tgttctgatt cccaggttca gggtcagagg
     5461 aggaggcctc ttcagtggcc acaatgtgtg gagagtccct gccaggagac gcactgaggg
     5521 cagtagaggc cgagaaaagt tcaattaagg caggaactca gggctgccct ctaggagtgt
     5581 gtaagtctga agctgtttcg caggtcaagg tcccagcttc ctaaggacag gtctctctag
     5641 gggtactcag cagaccaaag gctgactgcc ccctccccaa agcaaagggt ctctctggaa
     5701 ggttttatcc cacatgagag ctcacgacac ctggagcttc cagcaagttt actgaacacc
     5761 caactctgcc tatggcacta catggggaca gaggcgagga gggagaactc agacatctgc
     5821 cctaaggagc tcactctcta gctggggaaa cagctcacac acacatgcag gcatcgacgg
     5881 gtcactgata gtagcatgca gcacgtgctg agggccatag gcctgtcacc atgactattg
     5941 ctggagctca agtacccagg aatggtaacc aggaaggctt cctggagaat ggaacgactc
     6001 gagctgggct ttagaagtcc aagtatctca aaccgaaagg gaccttaaca atcatttatt
     6061 ccagcagttt tcaaact
//
LOCUS       XR_004347814            2565 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746631
            (LOC116746631), ncRNA.
ACCESSION   XR_004347814
VERSION     XR_004347814.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2565
                     /gene="LOC116746631"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746631"
     ncRNA           1..2565
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746631"
                     /product="uncharacterized LOC116746631"
                     /db_xref="GeneID:116746631"
ORIGIN      
        1 cccaactttg ttcagttcta cagctggagc ttctaggccc tacagagggg gaagcagggt
       61 cagtcccacg aaagcaaatg gccttgagaa cacagaggca agagggaagc aggcacttca
      121 gggacttcga gcagctcatc tgccttgaac gaaagtgggt ctctatcacg atactctctt
      181 ctggataatg cattaccgag ctcccttctc cctcccggcc tcagactaga caggaaacct
      241 tgattcctcc tcccacggtc aagaaaatgg agtggctctg aagaggctgt gggaccctca
      301 agtccctcgc tgcaggtgct ctcatctttc ccatcctgca ccaccaacac gcaccctctg
      361 cttcggcaag gcttttctct gctgtccccc gaatggccac cccagccatc ttgcaccggc
      421 cagcgcaagc ccgagcacac aggaggtggt cactgaaata agacctcttg gaaacgggga
      481 gatctgatgg gacattctgg gtggccacgc tctgcatttc aagtcataag aaagccacgg
      541 ggatcacgct ccactgtcag cgaggcctgg actggatgtg gcataattat gaaggaagac
      601 cagtaatctg ggggggcctt cagaacaaat acccactttc ccgtcttcca ggacaccctc
      661 gcacctttgc cctatttggg gcaagtagtc aggtggtgga ccagggaaca ggtctggcta
      721 actgatggat gttagccacg accacacgca atcacagaga gccagagtgg gggttggaga
      781 gggggctacc aggaaaggac aatgccttac ccagggctct gtcagagatc cctggctctg
      841 gtctgtttct tccttggtga aatggatact attctgtaga tttctctccc ctgtggtaaa
      901 gatgaaagac tgtaaggcta aaaccaatct tgccgttgga gaagaaaatc cagggttgga
      961 ggtagaactg gatgtcttcc ttcagagcta ggtgtgccca tacttggggt ggggtggggc
     1021 tgccctggat tgctccctcc tcactgtcag atagggcaga acccagctgg ccctgggccc
     1081 ctggcattca tgctgtgagc cagggtccca tcactgatca gccccaactg cctgagaact
     1141 tcctggggct gataaaggag ctcagacccc tggttctcag gcctgggctg gggagagcta
     1201 gccacggtcc accacacccc tggatttcca ccctggaggc tgcaccttgg ctcacatctt
     1261 tagggctctg actttaaccc ctagcccgag gggagattcc aacactgcaa agcatgcgcc
     1321 ctaggcctgg cccatctcat cctgatagca tccccggcat ctgctcgact ggcctgcaga
     1381 atctctagct cctgcactgc tgcggccgga cagcgcctcc tctggcccct caggcagggg
     1441 cagtaggtgc tgccacattg ccagtcaggc cctcctgggc ccccatgtgc agcagggggg
     1501 tccccaaggt gtggtgtcct tacctccctg atctgagcga ggggcagtga agcaagctgc
     1561 cgcgatctcc ggaactcaag ctgctgtggg ggacaaagtg aagcagtgac ccagggacag
     1621 ctcccattcg atgggagtgg cttctttgcc cactccactc aggactcccc acctggaaaa
     1681 cactggaatc tgggttgggt tgcactgacc acaatgcatg tccagtgcct tggtgcttac
     1741 caaccgcttt cacattcccc attttgtcaa agccccatag cccccaacga ggtaggcgaa
     1801 gactaccaga cctattttat agacgaggta gataggctca gagaggcaaa tggatttgct
     1861 caaggtcaca ctgctgctag agagcagagc caggtataac ctggaaacca cacgctcatg
     1921 gggggcagag tggcacaggc tctgtgactt tgggccagtt acttaacctc tctgaacctc
     1981 agtcttctca tgtgaaaaat ggggatagtg acagttccta tcttgttggg ttattgtgaa
     2041 gattaaatga gataatgctg taaaacgacc ttggcatagt agtcgcatag ggacctgctc
     2101 aataaatgtg agcaatgact gtggttatta tcccaagaat actcagacgc tgtccctgcg
     2161 taggccatgg cccagatgaa gccctgtttt tacctctagg ctcccatctt gtctctgttg
     2221 gtgtcattca agacctgcta agctgggctc ggggtcccag tgtggagaag cagggacaga
     2281 gtagggccac tggactcctc tccagggctg cctgcctggt gaagggggct gggaacctgt
     2341 ctatggctct gattcacagc cccacggcgg tggctgcctg ctttctcatg tggacctcag
     2401 gtctgctcag ggccaagcag gggctgactg agattctgcc ctgagtcttt gatccctaga
     2461 ggtcaaggct gagcatggga gctgaaagga tcaggagtgg tctaggctct ccaaacaaat
     2521 ctcggcccag ttcagcctgg ccctccaggg tctgtggaag cccag
//
LOCUS       XM_032618140            1405 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus LysM domain containing 2 (LYSMD2), mRNA.
ACCESSION   XM_032618140
VERSION     XM_032618140.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1405
                     /gene="LYSMD2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 5 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746638"
     CDS             222..866
                     /gene="LYSMD2"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 2"
                     /protein_id="XP_032474031.1"
                     /db_xref="GeneID:116746638"
                     /translation="MADSSPERSLRAAGPRTPRSSPPSAPPPSRSLSEAEEAELSLSL
                     ARTKTRSYGSTASVRAPLGAGVIERHVEHRVRPGDTLQGIALKYGVSMEQIKRANKLF
                     TNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETVDSFSHEEDLVAAGEDLSPPSP
                     QESDAQPMHPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESLFAASLYHS"
     misc_feature    <225..572
                     /gene="LYSMD2"
                     /note="LysM repeat [Cell wall/membrane/envelope
                     biogenesis]; Region: LysM; COG1388"
                     /db_xref="CDD:440998"
ORIGIN      
        1 ctctccaagc ttgtgaggag ctgttgggtg cgctggggaa ggcggaacgc gtaggagcag
       61 gtgcccacca tggccggtcc gcagctttcc gccgcggcct ccagcccgcc gtccccgcgg
      121 aacggccttc cgcagcccct gtgaggagga agaggaggcg gtggcggacg aggcgccgcc
      181 ctcttggcga gcttcccgac ccggcggcct ccgcaggacc catggctgat tcctcgcccg
      241 agcggtccct gcgggcagcc ggaccccgca cgccccggtc ctcgcccccc tcggcgccgc
      301 caccgtcgcg ctcgctctcc gaggccgagg aggccgagct gtcgctgagc ctggcgcgca
      361 ccaagacccg ctcgtacggc agcacggcca gcgtgcgggc gccgctgggc gccggcgtca
      421 tcgagcgcca tgtggagcat cgggtgcgcc ccggcgacac gctgcagggc atcgcgctca
      481 agtacggagt ctcgatggag cagattaaaa gggcaaataa actgtttacc aatgattgta
      541 tatttctgaa gaaaactttg aacatcccag ttatatcaga gaagcctttg ctgtttaatg
      601 gacttaactc aatagattct ccagaaaatg aaactgttga tagtttttct catgaagaag
      661 acctggtagc ggctggggaa gacctttccc ctcccagtcc tcaagaatct gatgctcagc
      721 ccatgcatcc ggaggaagtg tcagccagag atttcctgca aaggctggac ttgcagatta
      781 agttatcaac acaggcagcc aagaaactaa aggaagagag cagagatgaa gaaagtctct
      841 ttgcagcttc cctctatcac agttagatga tcagggggca taatctaacc tgggttaaga
      901 gatggttaga tcataaagaa accaacaact gatgattcaa aagcatccct tttggattct
      961 catagcatat atctttaaat cacaattaag tagttccacc tacagcaatt gcactgaagt
     1021 gactagctcc ctctggcttt ctatgatctt cagtctttat tatggcatga cagcaaaatt
     1081 gtatcttaaa gctcatcact tttgcaagcg gtggtagttt ttcgactagc ttttgtaaat
     1141 actagttgac ataaagccac aaagactgtt tacatattca aggtaaaaat gtttatttcc
     1201 tgagaaatcc taattatgtg aaaaacatgg ttgctgttta agtgatgctg attttgctat
     1261 gtgtttataa cttaagtgct atatatatat atttcgatat gtattacata ttctgtatta
     1321 ctataaagaa acaaattttg tctgctattt tgtaaaatta aactccaaaa gtctgaatga
     1381 gaaaataaac tatgttttca tattt
//
LOCUS       XM_032618155            6283 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus alpha kinase 3 (ALPK3), transcript
            variant X1, mRNA.
ACCESSION   XM_032618155
VERSION     XM_032618155.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6283
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6283
                     /gene="ALPK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746642"
     CDS             7..5001
                     /gene="ALPK3"
                     /codon_start=1
                     /product="alpha-protein kinase 3 isoform X1"
                     /protein_id="XP_032474046.1"
                     /db_xref="GeneID:116746642"
                     /translation="MGSRRAPGRGWGSGGRSGAGGDGEDDGPMWIPSPASRSYLLSVR
                     PETRSTFCSVIAQLTEETQPLFETTLKSRAVSEDSDVRFTCIVTGYPEPEVTWYKDDT
                     ELDRYCGLPKYEITHQGNRHTLQLYRCREEDAAIYQASAQNAKGIVSCSGVLEVGTMT
                     EYKIHQRWFAKLKRKAAAKMREIEKSWKHGKEAVEEADTLRKLSPDRFQRKRRLSGAE
                     VPVPSAPTREVENGTPVAWQEGETEPGQHPGLGLINSFAPGEVTTNGEAAPENREAGE
                     HGLLTYICKAMELGPQRAPKKESGAKKKKKDEEPKQGVQKPEVERAARSHHSSENCVP
                     SSDKPDSCGTQGPMDMEQVQTQPRGRAAQGPGSSGADGTTKLASAVGTQDQAQNAPVL
                     GPDQEVYFSLKDMYLESTQADKPQGEEGAQAPSGRTPGELPSGKVSSKARGEREPAVP
                     GQPTPSAPQQTRPFNRKRFAPPKPKGEPTTSCKPDSSPSQDPEPGAQSSGKALPQASA
                     QVPTPPARRRQSTQDSPLQGQAGHRTPGKVQESQATMAPTTLASSSSDMVSAGCSTSR
                     SQDIIEPMDTETQEDRRASADQNTGGKKNTEMDRKMQVDGRTQGDGTQTTQRTQADRK
                     TQVDVVTQESERSESGRNSQEDVMAQGKVGTQADERTQADRRVQEDKGTWSEGSIPTA
                     VKCWSEKASMTGISPQSRAPKRPPSEDPRSPQIIECFEQTPEEFSVPDKPEFMLRPDE
                     AAGTASGSREETVPGPLAGGLTRGAQLPPEGSLEQVGGERYRGPEQSGPVKDKAEEGL
                     SQGPKQEQPGELLPVDLGGCPPAGLSPQVPTLPSLPGAGLTDNSQQRLPSTPASQHMS
                     TAAFLPSGDKASLSSAPPLHLGLGTPSQSHPPGTRAADAEGACAKVPGVEGRTSGPQT
                     CDPGLIDSLKSYLLLLLKLSSSETSGRGPGAQEEAAAGDQAPSPSLAPTVEVAGLSPQ
                     TSRRILERVENNRLVQSAQTLLLSPCTSRRLTGLLDREVQVGCQALAAARCPGPSPLS
                     VPAIVVGEEEGPGVASGGSSEGEGEVSLEGPGLLPTSQESGMGGPLGGVGGQAAPGQG
                     LLSAESRAQEPFREEEIPGEALTDLPAATPEELALGARRKRFLPKVRAAGDGEPTKPE
                     ERESPSGSPRGPRKGLAPGPLGSPGREKRSPTQGRKADLLEVPRAEEEPAAGALGSSP
                     RASNLEAELALEEGKQGTPAKPRRAKDLLKAPQVIRKIRVEQFPDASGSLKLWCQFFN
                     ILSDSVLTWAKDQRPVGEVGRSAGDEGPAALAIVQASPVDCGVYRCTIRNEHGSASTD
                     FCLSPEVLSGFISREESQVGEEIEMTPMVFAKGLADTGCWGDKLFGRLVSEELQGGGH
                     GCGLRKASQAKVIYGLEPIFESGLTCIIKVSSLLVFGPSSETSLLGRNYDVTIQGCKI
                     QNMSREYCKIFAAEARAAPGFGDVPEIIPLYLIYRPANNIPYATLEEDLGKPMESYCS
                     REWGFAAAPAASSSSEAVQKCQTFQHWLYLWTNGSFLVTDLAGVNWKMTDVQIATKLR
                     GYQGLKESCFPALLDQFASSHQCNTFCEMLGLKPLKGPEAAHPQAKAKGSKSPSAGRR
                     GPQLSPQPQRKGPPSPQKSAPSSKATPQASEAVATQLLGQPPIQDGGSKAQGMR"
     misc_feature    196..474
                     /gene="ALPK3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    247..261
                     /gene="ALPK3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    286..300
                     /gene="ALPK3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    370..384
                     /gene="ALPK3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    412..429
                     /gene="ALPK3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    451..462
                     /gene="ALPK3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1072..1620
                     /gene="ALPK3"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated; Region: PRK07764"
                     /db_xref="CDD:236090"
     misc_feature    1252..>2016
                     /gene="ALPK3"
                     /note="transcription termination factor Rho; Provisional;
                     Region: PRK12678"
                     /db_xref="CDD:237171"
     misc_feature    <2071..3678
                     /gene="ALPK3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3808..3978
                     /gene="ALPK3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    3808..3822
                     /gene="ALPK3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    3871..3891
                     /gene="ALPK3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    3919..3936
                     /gene="ALPK3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    3961..3972
                     /gene="ALPK3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    4018..4743
                     /gene="ALPK3"
                     /note="Alpha kinase family; Region: Alpha_kinase; cl28917"
                     /db_xref="CDD:355793"
     misc_feature    order(4132..4137,4144..4155,4159..4161,4219..4221,
                     4225..4227,4396..4398,4450..4461,4606..4608,4612..4614,
                     4636..4638)
                     /gene="ALPK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:341214"
ORIGIN      
        1 agcagcatgg ggtcacggag ggccccaggc cgcggctggg gctcgggcgg acggtccggg
       61 gcggggggcg acggcgagga cgacgggccc atgtggatcc ccagccccgc cagccgcagc
      121 tacctgctca gcgtgcggcc cgagacgagg agcaccttct gctccgtcat tgctcagcta
      181 acagaggaga cccagccgct atttgagacc acgctcaagt cccgggctgt gtccgaggac
      241 agcgacgtta gattcacctg catcgtcaca ggatacccag agccagaggt gacctggtac
      301 aaggatgaca cagagctgga ccgctactgt ggcttgccaa aatacgagat cactcatcag
      361 ggcaaccgcc acacactgca gctctacagg tgtcgagaag aagacgccgc catctaccag
      421 gcttctgccc agaatgccaa gggaattgtg tcctgctcgg gggtcttgga ggtgggcacc
      481 atgaccgaat acaagatcca ccagcgctgg ttcgccaagc tgaagcgcaa ggctgcggca
      541 aagatgcgtg agattgagaa gagctggaag cacgggaagg aggccgtgga agaagccgac
      601 accctgcgca agctcagccc cgaccgcttc cagcggaagc ggcggctgag tggggccgag
      661 gtgccagtcc cctcggcccc cacccgggag gttgagaacg ggacaccggt ggcttggcag
      721 gagggagaga cggagcctgg tcagcaccca ggtttgggcc ttatcaacag ttttgctcct
      781 ggagaggtga ccaccaacgg ggaggctgcc cctgagaaca gggaagctgg ggagcatggc
      841 ctgttgacat acatctgtaa agccatggag ctggggcctc agagagcccc caaaaaggag
      901 tctggggcca agaagaaaaa gaaagatgag gaacctaagc aaggtgtgca gaagccagag
      961 gtagagaggg cagctcgaag ccaccattcc tctgaaaact gtgtccccag ttcagacaag
     1021 cctgactcct gtgggacaca ggggcccatg gacatggagc aggttcagac ccagcccagg
     1081 ggcagggccg cacaggggcc tggatcctct ggagcagatg gcaccacgaa gctagcctct
     1141 gctgtgggta ctcaagacca ggcccagaat gcccctgtcc taggcccaga ccaggaagtg
     1201 tatttctccc tgaaggacat gtatctggag agcacccagg cagacaagcc tcagggggag
     1261 gagggggccc aggcccccag tggcaggaca cctggagagc tgccctcagg gaaggtatcc
     1321 agcaaagcca gaggtgagag ggaacctgct gtccctggcc agcccacgcc ctcagcccca
     1381 cagcagacta ggcccttcaa caggaagaga tttgctcctc cgaagcccaa aggggagccc
     1441 accaccagct gcaagcctga ttcttcccca agtcaagatc cagaacctgg ggctcagagc
     1501 tcagggaagg ccctgcctca ggcctctgcc caagtgccca caccccccgc ccggcggaga
     1561 cagagcaccc aggacagccc cttgcagggg caagcaggcc acaggactcc aggaaaggtc
     1621 caggagtccc aggcaaccat ggctcctacc acattggcca gcagcagctc tgatatggtc
     1681 tctgctggtt gcagcacctc cagaagtcag gacatcattg agcccatgga cacagaaacc
     1741 caggaggaca ggagagcatc tgctgatcag aacactggag gcaagaagaa tacagagatg
     1801 gataggaaga tgcaggtgga tgggaggacg cagggagatg gaacacaaac cacccagagg
     1861 acacaggcag ataggaagac acaggtggat gttgtgacac aagaaagtga gaggtcagag
     1921 tcaggcagga attcccagga ggacgtgatg gcacaaggaa aggtggggac ccaggcagat
     1981 gagaggacac aggcagacag aagggtgcag gaagacaagg ggacatggtc agaggggagc
     2041 attcccacag ctgtgaaatg ttggtcagag aaggcgtcca tgaccggtat cagcccacag
     2101 tccagggctc ccaaacgccc accttcagag gatcctaggt cccctcagat tattgaatgc
     2161 tttgaacaga ccccagaaga gttctccgtc ccagacaaac ccgagtttat gctcagacct
     2221 gacgaggcag caggaacggc ctccgggagc cgtgaggaaa ctgtgccagg tcccctggcg
     2281 gggggcctca cacgcggggc acagctgcct cctgagggca gtttggagca ggtgggagga
     2341 gagagatatc gagggccgga gcagtcaggt ccagttaagg acaaggctga ggagggcctg
     2401 tcccagggcc ccaagcagga acagccggga gaattgctgc ctgtggatct gggtggctgt
     2461 cctccagcgg gcctgagccc ccaggtgccc actctgccct ctcttcctgg ggctggcctg
     2521 acggataact cacagcagcg gctgcccagc accccggctt ctcagcacat gagcacagcc
     2581 gccttcctac cctctgggga caaggcctcg ctgagttctg cccccccact gcacctgggg
     2641 ctgggcaccc ccagccagag tcacccgcca ggaaccaggg cagcagacgc tgagggggcc
     2701 tgcgccaagg tgcccggcgt ggaagggagg acttcaggcc cccagacctg tgaccctggc
     2761 ctcatagact ccctgaagag ctacttgctc ctgctactga agctatccag ctcagagacg
     2821 agtggcaggg gcccaggggc ccaggaggaa gctgccgctg gggatcaggc accctcaccc
     2881 tctctggccc ccaccgtgga agtggccggt ctgagtcccc agacgtcacg gcgcatcctg
     2941 gagcgtgtgg agaacaaccg tctggtgcag agcgcgcaga ctctgctgct gagcccctgt
     3001 acctcccgcc gcctcactgg cctcctggac cgcgaggtgc aggttggctg tcaggccctg
     3061 gctgctgccc ggtgccctgg ccccagcccc ctctctgtcc ctgccatcgt ggtaggtgag
     3121 gaggaaggcc ccggggtggc ctcaggagga tccagtgaag gtgagggaga ggtttccctt
     3181 gaggggcctg gcctcctgcc gacctcccag gagagcggca tgggtgggcc gctggggggc
     3241 gtgggtggac aggcagcccc tgggcaggga ctgctgtcag cagagagcag agcccaggaa
     3301 cccttccgag aggaggagat cccaggggaa gctctgacag atctccccgc agctacgccc
     3361 gaggaactgg ctctgggggc ccggaggaag aggtttctcc ctaaggtcag agcagcagga
     3421 gatggggagc caaccaagcc cgaagaaagg gagagcccct cgggttcccc ccgggggccc
     3481 cggaagggcc ttgcaccggg gcccctgggg agtccaggac gggagaaacg ttcccctact
     3541 cagggcagaa aggcagacct gctggaggtg ccgcgggcag aggaggagcc ggcagcaggg
     3601 gccctgggct ccagccccag agccagcaac ctggaagcag agctggccct ggaggaaggc
     3661 aagcagggca ctccagccaa gccaaggaga gccaaagacc tgctaaaagc cccacaggtg
     3721 atccggaaga ttcgggtgga gcagtttcct gatgcctcgg gcagcctgaa gctctggtgc
     3781 cagtttttca acattcttag tgactcggtc ttgacatggg ccaaggatca gcgcccagtg
     3841 ggcgaggtgg gcaggagtgc aggggatgag gggccagcgg ccctggccat cgtgcaggcg
     3901 tcccccgtag actgtggcgt gtatcgatgc accatccgca acgagcacgg ctcggcctcc
     3961 actgacttct gcctcagccc cgaggtgctg tcaggattca tctccagaga agaaagtcaa
     4021 gttggagaag agattgagat gacccccatg gtgtttgcta agggtctggc tgacactggc
     4081 tgctgggggg acaagctctt tgggcgcctg gtgagtgagg agctacaagg tggtggacac
     4141 gggtgtggcc ttcggaaggc ctcccaggcc aaggtcatct acgggctgga gcccatcttt
     4201 gagtcaggcc tcacgtgcat catcaaggtg tccagcctgc ttgtgtttgg gcccagcagt
     4261 gagacttctc ttctgggcag aaactatgac gtcaccatcc aggggtgcaa gatccagaac
     4321 atgagtcgag agtactgcaa aatctttgcg gctgaagccc gggctgcgcc tggcttcggg
     4381 gacgtgcctg agatcatccc actgtatctg atctaccggc ctgcaaacaa tatcccatat
     4441 gctaccctgg aggaggacct gggcaagccc atggagtctt actgttcccg ggaatggggc
     4501 tttgctgcag ctccagcagc atctagcagc tctgaggccg tgcagaaatg ccagaccttc
     4561 cagcactggc tgtatctgtg gacaaatggc agcttccttg tcacagattt ggcaggggtt
     4621 aactggaaaa tgactgatgt gcagattgct accaaactgc gaggatacca aggcctcaag
     4681 gagagctgtt tccctgccct gctggaccag tttgcctctt cccaccagtg caacaccttc
     4741 tgtgagatgc tggggctaaa acctctcaag ggccctgagg ctgcccaccc ccaagccaag
     4801 gccaaaggct ccaagagtcc atctgccggc aggaggggcc cccagctgag tcctcagccc
     4861 cagaggaaag gccctcccag tccccagaag agtgccccaa gctccaaggc cacccctcag
     4921 gcctcagagg cagtcgccac ccagttactc ggacagcctc ccatccaaga tggaggctcc
     4981 aaggcccagg gcatgcggta gcccccacag gaggctgggg gcctccaccc agcagcagac
     5041 caacaaggaa gcagctcgaa ccgatggaga cgttcccagt acaggactaa ccggagcagg
     5101 tgcactgagg cggcaccact cggggcctct gcccgcagcc tctcctcatc agatgcttgg
     5161 tacctgacac ccagcccggt ggcctctcct ggtgccatcg tccccgcggc tccgaggccc
     5221 tacctcccgg ggcctgcagc ctagccctcc ttgaagttta cactggccac tgctggaggc
     5281 tccctgagtc ctctgcatga gttctgcaac caaccccttg ccccaggccc tgccgtgaat
     5341 gttgcactct gggggcacgc aggccagcac ctaccctttt cccttcactt ggccctgatc
     5401 cctccgtatc ctcagggctc cagacttcct ctgcggtgtc tggcctggtg actctcaggg
     5461 tgtcttttcc ttcgagtcat tttgcctcat tcaccccagc ttatcttgca actaacctgt
     5521 ccctgagccc gaatggggct cagggccctt ccagagactg tcatatcctt gtgtctttgg
     5581 tgatgtgtgt tcatgctctt ccttccccca tcactcaggc actcagtcac ctgcctacca
     5641 tgctcccttg caccccatcc cccatccctg gctttgagcc caattgcagc ctgctgcctg
     5701 cctttcactg agttctgttt gttcccctac ccgcgggctt ccctagcctg acccccaccc
     5761 tactcaccat acctaggtga agagcagacc ctctggcctc tcagcccacc ccaggacact
     5821 cctcccctac ttctcccagg ccctctgccc gtgaggcgag agctggcatg aggattgcat
     5881 cagcagctgt ggccagacgg aaggtgttga ctttgtggga ccttgtgctc catactgaaa
     5941 ggaggtgggg tcacagtgaa tttcacatcc cctcttgacc agggatagag ggctgggact
     6001 cttctccaga gggcatgcac ctgggagctg taggaagaat gcagtccacc catgtgcagg
     6061 gtggaggagt gtctctgtgc ctgggaatta ggaccccctg ctcctaacca ttagctcttg
     6121 accctgggac tccagctctg ggcctcaata taggctccca aggaattgct gtgttcggcc
     6181 cagcaccctg ggcccttcct gagaaccctt ccttgaggcc tgggatgggg tgggtctgga
     6241 gctagcctgc tccccttgga atgcaataaa ggcagcaact gtg
//
LOCUS       XM_032618161            4510 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus alpha kinase 3 (ALPK3), transcript
            variant X2, mRNA.
ACCESSION   XM_032618161
VERSION     XM_032618161.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4510
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4510
                     /gene="ALPK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746642"
     CDS             7..4398
                     /gene="ALPK3"
                     /codon_start=1
                     /product="alpha-protein kinase 3 isoform X2"
                     /protein_id="XP_032474052.1"
                     /db_xref="GeneID:116746642"
                     /translation="MGSRRAPGRGWGSGGRSGAGGDGEDDGPMWIPSPASRSYLLSVR
                     PETRSTFCSVIAQLTEETQPLFETTLKSRAVSEDSDVRFTCIVTGYPEPEVTWYKDDT
                     ELDRYCGLPKYEITHQGNRHTLQLYRCREEDAAIYQASAQNAKGIVSCSGVLEVGTMT
                     EYKIHQRWFAKLKRKAAAKMREIEKSWKHGKEAVEEADTLRKLSPDRFQRKRRLSGAE
                     VPVPSAPTREVENGTPVAWQEGETEPGQHPGLGLINSFAPGEVTTNGEAAPENREAGE
                     HGLLTYICKAMELGPQRAPKKESGAKKKKKDEEPKQGVQKPEVERAARSHHSSENCVP
                     SSDKPDSCGTQGPMDMEQVQTQPRGRAAQGPGSSGADGTTKLASAVGTQDQAQNAPVL
                     GPDQEVYFSLKDMYLESTQADKPQGEEGAQAPSGRTPGELPSGKVSSKARGEREPAVP
                     GQPTPSAPQQTRPFNRKRFAPPKPKGEPTTSCKPDSSPSQDPEPGAQSSGKALPQASA
                     QVPTPPARRRQSTQDSPLQGQAGHRTPGKVQESQATMAPTTLASSSSDMVSAGCSTSR
                     SQDIIEPMDTETQEDRRASADQNTGGKKNTEMDRKMQVDGRTQGDGTQTTQRTQADRK
                     TQVDVVTQESERSESGRNSQEDVMAQGKVGTQADERTQADRRVQEDKGTWSEGSIPTA
                     VKCWSEKASMTGISPQSRAPKRPPSEDPRSPQIIECFEQTPEEFSVPDKPEFMLRPDE
                     AAGTASGSREETVPGPLAGGLTRGAQLPPEGSLEQVGGERYRGPEQSGPVKDKAEEGL
                     SQGPKQEQPGELLPVDLGGCPPAGLSPQVPTLPSLPGAGLTDNSQQRLPSTPASQHMS
                     TAAFLPSGDKASLSSAPPLHLGLGTPSQSHPPGTRAADAEGACAKVPGVEGRTSGPQT
                     CDPGLIDSLKSYLLLLLKLSSSETSGRGPGAQEEAAAGDQAPSPSLAPTVEVAGLSPQ
                     TSRRILERVENNRLVQSAQTLLLSPCTSRRLTGLLDREVQVGCQALAAARCPGPSPLS
                     VPAIVVGEEEGPGVASGGSSEGEGEVSLEGPGLLPTSQESGMGGPLGGVGGQAAPGQG
                     LLSAESRAQEPFREEEIPGEALTDLPAATPEELALGARRKRFLPKVRAAGDGEPTKPE
                     ERESPSGSPRGPRKGLAPGPLGSPGREKRSPTQGRKADLLEVPRAEEEPAAGALGSSP
                     RASNLEAELALEEGKQGTPAKPRRAKDLLKAPQVIRKIRVEQFPDASGSLKLWCQFFN
                     ILSDSVLTWAKDQRPVGEVGRSAGDEGPAALAIVQASPVDCGVYRCTIRNEHGSASTD
                     FCLSPEVLSGFISREESQVGEEIEMTPMVFAKGLADTGCWGDKLFGRLVSEELQGGGH
                     GCGLRKASQAKVIYGLEPIFESGLTCIIKVSSLLVFGPSSETSLLGRNYDVTIQGCKI
                     QNMSREYCKIFAAEARAAPGFGDVPEG"
     misc_feature    196..474
                     /gene="ALPK3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    247..261
                     /gene="ALPK3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    286..300
                     /gene="ALPK3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    370..384
                     /gene="ALPK3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    412..429
                     /gene="ALPK3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    451..462
                     /gene="ALPK3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1072..1620
                     /gene="ALPK3"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated; Region: PRK07764"
                     /db_xref="CDD:236090"
     misc_feature    1327..>2016
                     /gene="ALPK3"
                     /note="transcription termination factor Rho; Provisional;
                     Region: PRK12678"
                     /db_xref="CDD:237171"
     misc_feature    <2071..3501
                     /gene="ALPK3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3808..3978
                     /gene="ALPK3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    3808..3822
                     /gene="ALPK3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    3871..3891
                     /gene="ALPK3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    3919..3936
                     /gene="ALPK3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    3961..3972
                     /gene="ALPK3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    4018..>4392
                     /gene="ALPK3"
                     /note="Alpha kinase family; Region: Alpha_kinase; cl28917"
                     /db_xref="CDD:355793"
ORIGIN      
        1 agcagcatgg ggtcacggag ggccccaggc cgcggctggg gctcgggcgg acggtccggg
       61 gcggggggcg acggcgagga cgacgggccc atgtggatcc ccagccccgc cagccgcagc
      121 tacctgctca gcgtgcggcc cgagacgagg agcaccttct gctccgtcat tgctcagcta
      181 acagaggaga cccagccgct atttgagacc acgctcaagt cccgggctgt gtccgaggac
      241 agcgacgtta gattcacctg catcgtcaca ggatacccag agccagaggt gacctggtac
      301 aaggatgaca cagagctgga ccgctactgt ggcttgccaa aatacgagat cactcatcag
      361 ggcaaccgcc acacactgca gctctacagg tgtcgagaag aagacgccgc catctaccag
      421 gcttctgccc agaatgccaa gggaattgtg tcctgctcgg gggtcttgga ggtgggcacc
      481 atgaccgaat acaagatcca ccagcgctgg ttcgccaagc tgaagcgcaa ggctgcggca
      541 aagatgcgtg agattgagaa gagctggaag cacgggaagg aggccgtgga agaagccgac
      601 accctgcgca agctcagccc cgaccgcttc cagcggaagc ggcggctgag tggggccgag
      661 gtgccagtcc cctcggcccc cacccgggag gttgagaacg ggacaccggt ggcttggcag
      721 gagggagaga cggagcctgg tcagcaccca ggtttgggcc ttatcaacag ttttgctcct
      781 ggagaggtga ccaccaacgg ggaggctgcc cctgagaaca gggaagctgg ggagcatggc
      841 ctgttgacat acatctgtaa agccatggag ctggggcctc agagagcccc caaaaaggag
      901 tctggggcca agaagaaaaa gaaagatgag gaacctaagc aaggtgtgca gaagccagag
      961 gtagagaggg cagctcgaag ccaccattcc tctgaaaact gtgtccccag ttcagacaag
     1021 cctgactcct gtgggacaca ggggcccatg gacatggagc aggttcagac ccagcccagg
     1081 ggcagggccg cacaggggcc tggatcctct ggagcagatg gcaccacgaa gctagcctct
     1141 gctgtgggta ctcaagacca ggcccagaat gcccctgtcc taggcccaga ccaggaagtg
     1201 tatttctccc tgaaggacat gtatctggag agcacccagg cagacaagcc tcagggggag
     1261 gagggggccc aggcccccag tggcaggaca cctggagagc tgccctcagg gaaggtatcc
     1321 agcaaagcca gaggtgagag ggaacctgct gtccctggcc agcccacgcc ctcagcccca
     1381 cagcagacta ggcccttcaa caggaagaga tttgctcctc cgaagcccaa aggggagccc
     1441 accaccagct gcaagcctga ttcttcccca agtcaagatc cagaacctgg ggctcagagc
     1501 tcagggaagg ccctgcctca ggcctctgcc caagtgccca caccccccgc ccggcggaga
     1561 cagagcaccc aggacagccc cttgcagggg caagcaggcc acaggactcc aggaaaggtc
     1621 caggagtccc aggcaaccat ggctcctacc acattggcca gcagcagctc tgatatggtc
     1681 tctgctggtt gcagcacctc cagaagtcag gacatcattg agcccatgga cacagaaacc
     1741 caggaggaca ggagagcatc tgctgatcag aacactggag gcaagaagaa tacagagatg
     1801 gataggaaga tgcaggtgga tgggaggacg cagggagatg gaacacaaac cacccagagg
     1861 acacaggcag ataggaagac acaggtggat gttgtgacac aagaaagtga gaggtcagag
     1921 tcaggcagga attcccagga ggacgtgatg gcacaaggaa aggtggggac ccaggcagat
     1981 gagaggacac aggcagacag aagggtgcag gaagacaagg ggacatggtc agaggggagc
     2041 attcccacag ctgtgaaatg ttggtcagag aaggcgtcca tgaccggtat cagcccacag
     2101 tccagggctc ccaaacgccc accttcagag gatcctaggt cccctcagat tattgaatgc
     2161 tttgaacaga ccccagaaga gttctccgtc ccagacaaac ccgagtttat gctcagacct
     2221 gacgaggcag caggaacggc ctccgggagc cgtgaggaaa ctgtgccagg tcccctggcg
     2281 gggggcctca cacgcggggc acagctgcct cctgagggca gtttggagca ggtgggagga
     2341 gagagatatc gagggccgga gcagtcaggt ccagttaagg acaaggctga ggagggcctg
     2401 tcccagggcc ccaagcagga acagccggga gaattgctgc ctgtggatct gggtggctgt
     2461 cctccagcgg gcctgagccc ccaggtgccc actctgccct ctcttcctgg ggctggcctg
     2521 acggataact cacagcagcg gctgcccagc accccggctt ctcagcacat gagcacagcc
     2581 gccttcctac cctctgggga caaggcctcg ctgagttctg cccccccact gcacctgggg
     2641 ctgggcaccc ccagccagag tcacccgcca ggaaccaggg cagcagacgc tgagggggcc
     2701 tgcgccaagg tgcccggcgt ggaagggagg acttcaggcc cccagacctg tgaccctggc
     2761 ctcatagact ccctgaagag ctacttgctc ctgctactga agctatccag ctcagagacg
     2821 agtggcaggg gcccaggggc ccaggaggaa gctgccgctg gggatcaggc accctcaccc
     2881 tctctggccc ccaccgtgga agtggccggt ctgagtcccc agacgtcacg gcgcatcctg
     2941 gagcgtgtgg agaacaaccg tctggtgcag agcgcgcaga ctctgctgct gagcccctgt
     3001 acctcccgcc gcctcactgg cctcctggac cgcgaggtgc aggttggctg tcaggccctg
     3061 gctgctgccc ggtgccctgg ccccagcccc ctctctgtcc ctgccatcgt ggtaggtgag
     3121 gaggaaggcc ccggggtggc ctcaggagga tccagtgaag gtgagggaga ggtttccctt
     3181 gaggggcctg gcctcctgcc gacctcccag gagagcggca tgggtgggcc gctggggggc
     3241 gtgggtggac aggcagcccc tgggcaggga ctgctgtcag cagagagcag agcccaggaa
     3301 cccttccgag aggaggagat cccaggggaa gctctgacag atctccccgc agctacgccc
     3361 gaggaactgg ctctgggggc ccggaggaag aggtttctcc ctaaggtcag agcagcagga
     3421 gatggggagc caaccaagcc cgaagaaagg gagagcccct cgggttcccc ccgggggccc
     3481 cggaagggcc ttgcaccggg gcccctgggg agtccaggac gggagaaacg ttcccctact
     3541 cagggcagaa aggcagacct gctggaggtg ccgcgggcag aggaggagcc ggcagcaggg
     3601 gccctgggct ccagccccag agccagcaac ctggaagcag agctggccct ggaggaaggc
     3661 aagcagggca ctccagccaa gccaaggaga gccaaagacc tgctaaaagc cccacaggtg
     3721 atccggaaga ttcgggtgga gcagtttcct gatgcctcgg gcagcctgaa gctctggtgc
     3781 cagtttttca acattcttag tgactcggtc ttgacatggg ccaaggatca gcgcccagtg
     3841 ggcgaggtgg gcaggagtgc aggggatgag gggccagcgg ccctggccat cgtgcaggcg
     3901 tcccccgtag actgtggcgt gtatcgatgc accatccgca acgagcacgg ctcggcctcc
     3961 actgacttct gcctcagccc cgaggtgctg tcaggattca tctccagaga agaaagtcaa
     4021 gttggagaag agattgagat gacccccatg gtgtttgcta agggtctggc tgacactggc
     4081 tgctgggggg acaagctctt tgggcgcctg gtgagtgagg agctacaagg tggtggacac
     4141 gggtgtggcc ttcggaaggc ctcccaggcc aaggtcatct acgggctgga gcccatcttt
     4201 gagtcaggcc tcacgtgcat catcaaggtg tccagcctgc ttgtgtttgg gcccagcagt
     4261 gagacttctc ttctgggcag aaactatgac gtcaccatcc aggggtgcaa gatccagaac
     4321 atgagtcgag agtactgcaa aatctttgcg gctgaagccc gggctgcgcc tggcttcggg
     4381 gacgtgcctg agggttaact ggaaaatgac tgatgtgcag attgctacca aactgcgagg
     4441 ataccaaggc ctcaaggaga gctgtttccc tgccctgctg gaccagtttg cctcttccca
     4501 ccagtgcaac
//
LOCUS       XM_032618172            6322 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus alpha kinase 3 (ALPK3), transcript
            variant X3, mRNA.
ACCESSION   XM_032618172
VERSION     XM_032618172.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6322
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6322
                     /gene="ALPK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746642"
     CDS             7..5040
                     /gene="ALPK3"
                     /codon_start=1
                     /product="alpha-protein kinase 3 isoform X3"
                     /protein_id="XP_032474063.1"
                     /db_xref="GeneID:116746642"
                     /translation="MGSRRAPGRGWGSGGRSGAGGDGEDDGPMWIPSPASRSYLLSVR
                     PETSLSSNWLSHPSSGRSTFCSVIAQLTEETQPLFETTLKSRAVSEDSDVRFTCIVTG
                     YPEPEVTWYKDDTELDRYCGLPKYEITHQGNRHTLQLYRCREEDAAIYQASAQNAKGI
                     VSCSGVLEVGTMTEYKIHQRWFAKLKRKAAAKMREIEKSWKHGKEAVEEADTLRKLSP
                     DRFQRKRRLSGAEVPVPSAPTREVENGTPVAWQEGETEPGQHPGLGLINSFAPGEVTT
                     NGEAAPENREAGEHGLLTYICKAMELGPQRAPKKESGAKKKKKDEEPKQGVQKPEVER
                     AARSHHSSENCVPSSDKPDSCGTQGPMDMEQVQTQPRGRAAQGPGSSGADGTTKLASA
                     VGTQDQAQNAPVLGPDQEVYFSLKDMYLESTQADKPQGEEGAQAPSGRTPGELPSGKV
                     SSKARGEREPAVPGQPTPSAPQQTRPFNRKRFAPPKPKGEPTTSCKPDSSPSQDPEPG
                     AQSSGKALPQASAQVPTPPARRRQSTQDSPLQGQAGHRTPGKVQESQATMAPTTLASS
                     SSDMVSAGCSTSRSQDIIEPMDTETQEDRRASADQNTGGKKNTEMDRKMQVDGRTQGD
                     GTQTTQRTQADRKTQVDVVTQESERSESGRNSQEDVMAQGKVGTQADERTQADRRVQE
                     DKGTWSEGSIPTAVKCWSEKASMTGISPQSRAPKRPPSEDPRSPQIIECFEQTPEEFS
                     VPDKPEFMLRPDEAAGTASGSREETVPGPLAGGLTRGAQLPPEGSLEQVGGERYRGPE
                     QSGPVKDKAEEGLSQGPKQEQPGELLPVDLGGCPPAGLSPQVPTLPSLPGAGLTDNSQ
                     QRLPSTPASQHMSTAAFLPSGDKASLSSAPPLHLGLGTPSQSHPPGTRAADAEGACAK
                     VPGVEGRTSGPQTCDPGLIDSLKSYLLLLLKLSSSETSGRGPGAQEEAAAGDQAPSPS
                     LAPTVEVAGLSPQTSRRILERVENNRLVQSAQTLLLSPCTSRRLTGLLDREVQVGCQA
                     LAAARCPGPSPLSVPAIVVGEEEGPGVASGGSSEGEGEVSLEGPGLLPTSQESGMGGP
                     LGGVGGQAAPGQGLLSAESRAQEPFREEEIPGEALTDLPAATPEELALGARRKRFLPK
                     VRAAGDGEPTKPEERESPSGSPRGPRKGLAPGPLGSPGREKRSPTQGRKADLLEVPRA
                     EEEPAAGALGSSPRASNLEAELALEEGKQGTPAKPRRAKDLLKAPQVIRKIRVEQFPD
                     ASGSLKLWCQFFNILSDSVLTWAKDQRPVGEVGRSAGDEGPAALAIVQASPVDCGVYR
                     CTIRNEHGSASTDFCLSPEVLSGFISREESQVGEEIEMTPMVFAKGLADTGCWGDKLF
                     GRLVSEELQGGGHGCGLRKASQAKVIYGLEPIFESGLTCIIKVSSLLVFGPSSETSLL
                     GRNYDVTIQGCKIQNMSREYCKIFAAEARAAPGFGDVPEIIPLYLIYRPANNIPYATL
                     EEDLGKPMESYCSREWGFAAAPAASSSSEAVQKCQTFQHWLYLWTNGSFLVTDLAGVN
                     WKMTDVQIATKLRGYQGLKESCFPALLDQFASSHQCNTFCEMLGLKPLKGPEAAHPQA
                     KAKGSKSPSAGRRGPQLSPQPQRKGPPSPQKSAPSSKATPQASEAVATQLLGQPPIQD
                     GGSKAQGMR"
     misc_feature    235..513
                     /gene="ALPK3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    286..300
                     /gene="ALPK3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    325..339
                     /gene="ALPK3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    409..423
                     /gene="ALPK3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    451..468
                     /gene="ALPK3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    490..501
                     /gene="ALPK3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    <1111..1659
                     /gene="ALPK3"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated; Region: PRK07764"
                     /db_xref="CDD:236090"
     misc_feature    1291..>2055
                     /gene="ALPK3"
                     /note="transcription termination factor Rho; Provisional;
                     Region: PRK12678"
                     /db_xref="CDD:237171"
     misc_feature    <2110..3540
                     /gene="ALPK3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3847..4017
                     /gene="ALPK3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    3847..3861
                     /gene="ALPK3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    3910..3930
                     /gene="ALPK3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    3958..3975
                     /gene="ALPK3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    4000..4011
                     /gene="ALPK3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    4057..4782
                     /gene="ALPK3"
                     /note="Alpha kinase family; Region: Alpha_kinase; cl28917"
                     /db_xref="CDD:355793"
     misc_feature    order(4171..4176,4183..4194,4198..4200,4258..4260,
                     4264..4266,4435..4437,4489..4500,4645..4647,4651..4653,
                     4675..4677)
                     /gene="ALPK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:341214"
ORIGIN      
        1 agcagcatgg ggtcacggag ggccccaggc cgcggctggg gctcgggcgg acggtccggg
       61 gcggggggcg acggcgagga cgacgggccc atgtggatcc ccagccccgc cagccgcagc
      121 tacctgctca gcgtgcggcc cgagacgagc ttatcaagca actggttgtc tcaccccagc
      181 tctggaagga gcaccttctg ctccgtcatt gctcagctaa cagaggagac ccagccgcta
      241 tttgagacca cgctcaagtc ccgggctgtg tccgaggaca gcgacgttag attcacctgc
      301 atcgtcacag gatacccaga gccagaggtg acctggtaca aggatgacac agagctggac
      361 cgctactgtg gcttgccaaa atacgagatc actcatcagg gcaaccgcca cacactgcag
      421 ctctacaggt gtcgagaaga agacgccgcc atctaccagg cttctgccca gaatgccaag
      481 ggaattgtgt cctgctcggg ggtcttggag gtgggcacca tgaccgaata caagatccac
      541 cagcgctggt tcgccaagct gaagcgcaag gctgcggcaa agatgcgtga gattgagaag
      601 agctggaagc acgggaagga ggccgtggaa gaagccgaca ccctgcgcaa gctcagcccc
      661 gaccgcttcc agcggaagcg gcggctgagt ggggccgagg tgccagtccc ctcggccccc
      721 acccgggagg ttgagaacgg gacaccggtg gcttggcagg agggagagac ggagcctggt
      781 cagcacccag gtttgggcct tatcaacagt tttgctcctg gagaggtgac caccaacggg
      841 gaggctgccc ctgagaacag ggaagctggg gagcatggcc tgttgacata catctgtaaa
      901 gccatggagc tggggcctca gagagccccc aaaaaggagt ctggggccaa gaagaaaaag
      961 aaagatgagg aacctaagca aggtgtgcag aagccagagg tagagagggc agctcgaagc
     1021 caccattcct ctgaaaactg tgtccccagt tcagacaagc ctgactcctg tgggacacag
     1081 gggcccatgg acatggagca ggttcagacc cagcccaggg gcagggccgc acaggggcct
     1141 ggatcctctg gagcagatgg caccacgaag ctagcctctg ctgtgggtac tcaagaccag
     1201 gcccagaatg cccctgtcct aggcccagac caggaagtgt atttctccct gaaggacatg
     1261 tatctggaga gcacccaggc agacaagcct cagggggagg agggggccca ggcccccagt
     1321 ggcaggacac ctggagagct gccctcaggg aaggtatcca gcaaagccag aggtgagagg
     1381 gaacctgctg tccctggcca gcccacgccc tcagccccac agcagactag gcccttcaac
     1441 aggaagagat ttgctcctcc gaagcccaaa ggggagccca ccaccagctg caagcctgat
     1501 tcttccccaa gtcaagatcc agaacctggg gctcagagct cagggaaggc cctgcctcag
     1561 gcctctgccc aagtgcccac accccccgcc cggcggagac agagcaccca ggacagcccc
     1621 ttgcaggggc aagcaggcca caggactcca ggaaaggtcc aggagtccca ggcaaccatg
     1681 gctcctacca cattggccag cagcagctct gatatggtct ctgctggttg cagcacctcc
     1741 agaagtcagg acatcattga gcccatggac acagaaaccc aggaggacag gagagcatct
     1801 gctgatcaga acactggagg caagaagaat acagagatgg ataggaagat gcaggtggat
     1861 gggaggacgc agggagatgg aacacaaacc acccagagga cacaggcaga taggaagaca
     1921 caggtggatg ttgtgacaca agaaagtgag aggtcagagt caggcaggaa ttcccaggag
     1981 gacgtgatgg cacaaggaaa ggtggggacc caggcagatg agaggacaca ggcagacaga
     2041 agggtgcagg aagacaaggg gacatggtca gaggggagca ttcccacagc tgtgaaatgt
     2101 tggtcagaga aggcgtccat gaccggtatc agcccacagt ccagggctcc caaacgccca
     2161 ccttcagagg atcctaggtc ccctcagatt attgaatgct ttgaacagac cccagaagag
     2221 ttctccgtcc cagacaaacc cgagtttatg ctcagacctg acgaggcagc aggaacggcc
     2281 tccgggagcc gtgaggaaac tgtgccaggt cccctggcgg ggggcctcac acgcggggca
     2341 cagctgcctc ctgagggcag tttggagcag gtgggaggag agagatatcg agggccggag
     2401 cagtcaggtc cagttaagga caaggctgag gagggcctgt cccagggccc caagcaggaa
     2461 cagccgggag aattgctgcc tgtggatctg ggtggctgtc ctccagcggg cctgagcccc
     2521 caggtgccca ctctgccctc tcttcctggg gctggcctga cggataactc acagcagcgg
     2581 ctgcccagca ccccggcttc tcagcacatg agcacagccg ccttcctacc ctctggggac
     2641 aaggcctcgc tgagttctgc ccccccactg cacctggggc tgggcacccc cagccagagt
     2701 cacccgccag gaaccagggc agcagacgct gagggggcct gcgccaaggt gcccggcgtg
     2761 gaagggagga cttcaggccc ccagacctgt gaccctggcc tcatagactc cctgaagagc
     2821 tacttgctcc tgctactgaa gctatccagc tcagagacga gtggcagggg cccaggggcc
     2881 caggaggaag ctgccgctgg ggatcaggca ccctcaccct ctctggcccc caccgtggaa
     2941 gtggccggtc tgagtcccca gacgtcacgg cgcatcctgg agcgtgtgga gaacaaccgt
     3001 ctggtgcaga gcgcgcagac tctgctgctg agcccctgta cctcccgccg cctcactggc
     3061 ctcctggacc gcgaggtgca ggttggctgt caggccctgg ctgctgcccg gtgccctggc
     3121 cccagccccc tctctgtccc tgccatcgtg gtaggtgagg aggaaggccc cggggtggcc
     3181 tcaggaggat ccagtgaagg tgagggagag gtttcccttg aggggcctgg cctcctgccg
     3241 acctcccagg agagcggcat gggtgggccg ctggggggcg tgggtggaca ggcagcccct
     3301 gggcagggac tgctgtcagc agagagcaga gcccaggaac ccttccgaga ggaggagatc
     3361 ccaggggaag ctctgacaga tctccccgca gctacgcccg aggaactggc tctgggggcc
     3421 cggaggaaga ggtttctccc taaggtcaga gcagcaggag atggggagcc aaccaagccc
     3481 gaagaaaggg agagcccctc gggttccccc cgggggcccc ggaagggcct tgcaccgggg
     3541 cccctgggga gtccaggacg ggagaaacgt tcccctactc agggcagaaa ggcagacctg
     3601 ctggaggtgc cgcgggcaga ggaggagccg gcagcagggg ccctgggctc cagccccaga
     3661 gccagcaacc tggaagcaga gctggccctg gaggaaggca agcagggcac tccagccaag
     3721 ccaaggagag ccaaagacct gctaaaagcc ccacaggtga tccggaagat tcgggtggag
     3781 cagtttcctg atgcctcggg cagcctgaag ctctggtgcc agtttttcaa cattcttagt
     3841 gactcggtct tgacatgggc caaggatcag cgcccagtgg gcgaggtggg caggagtgca
     3901 ggggatgagg ggccagcggc cctggccatc gtgcaggcgt cccccgtaga ctgtggcgtg
     3961 tatcgatgca ccatccgcaa cgagcacggc tcggcctcca ctgacttctg cctcagcccc
     4021 gaggtgctgt caggattcat ctccagagaa gaaagtcaag ttggagaaga gattgagatg
     4081 acccccatgg tgtttgctaa gggtctggct gacactggct gctgggggga caagctcttt
     4141 gggcgcctgg tgagtgagga gctacaaggt ggtggacacg ggtgtggcct tcggaaggcc
     4201 tcccaggcca aggtcatcta cgggctggag cccatctttg agtcaggcct cacgtgcatc
     4261 atcaaggtgt ccagcctgct tgtgtttggg cccagcagtg agacttctct tctgggcaga
     4321 aactatgacg tcaccatcca ggggtgcaag atccagaaca tgagtcgaga gtactgcaaa
     4381 atctttgcgg ctgaagcccg ggctgcgcct ggcttcgggg acgtgcctga gatcatccca
     4441 ctgtatctga tctaccggcc tgcaaacaat atcccatatg ctaccctgga ggaggacctg
     4501 ggcaagccca tggagtctta ctgttcccgg gaatggggct ttgctgcagc tccagcagca
     4561 tctagcagct ctgaggccgt gcagaaatgc cagaccttcc agcactggct gtatctgtgg
     4621 acaaatggca gcttccttgt cacagatttg gcaggggtta actggaaaat gactgatgtg
     4681 cagattgcta ccaaactgcg aggataccaa ggcctcaagg agagctgttt ccctgccctg
     4741 ctggaccagt ttgcctcttc ccaccagtgc aacaccttct gtgagatgct ggggctaaaa
     4801 cctctcaagg gccctgaggc tgcccacccc caagccaagg ccaaaggctc caagagtcca
     4861 tctgccggca ggaggggccc ccagctgagt cctcagcccc agaggaaagg ccctcccagt
     4921 ccccagaaga gtgccccaag ctccaaggcc acccctcagg cctcagaggc agtcgccacc
     4981 cagttactcg gacagcctcc catccaagat ggaggctcca aggcccaggg catgcggtag
     5041 cccccacagg aggctggggg cctccaccca gcagcagacc aacaaggaag cagctcgaac
     5101 cgatggagac gttcccagta caggactaac cggagcaggt gcactgaggc ggcaccactc
     5161 ggggcctctg cccgcagcct ctcctcatca gatgcttggt acctgacacc cagcccggtg
     5221 gcctctcctg gtgccatcgt ccccgcggct ccgaggccct acctcccggg gcctgcagcc
     5281 tagccctcct tgaagtttac actggccact gctggaggct ccctgagtcc tctgcatgag
     5341 ttctgcaacc aaccccttgc cccaggccct gccgtgaatg ttgcactctg ggggcacgca
     5401 ggccagcacc tacccttttc ccttcacttg gccctgatcc ctccgtatcc tcagggctcc
     5461 agacttcctc tgcggtgtct ggcctggtga ctctcagggt gtcttttcct tcgagtcatt
     5521 ttgcctcatt caccccagct tatcttgcaa ctaacctgtc cctgagcccg aatggggctc
     5581 agggcccttc cagagactgt catatccttg tgtctttggt gatgtgtgtt catgctcttc
     5641 cttcccccat cactcaggca ctcagtcacc tgcctaccat gctcccttgc accccatccc
     5701 ccatccctgg ctttgagccc aattgcagcc tgctgcctgc ctttcactga gttctgtttg
     5761 ttcccctacc cgcgggcttc cctagcctga cccccaccct actcaccata cctaggtgaa
     5821 gagcagaccc tctggcctct cagcccaccc caggacactc ctcccctact tctcccaggc
     5881 cctctgcccg tgaggcgaga gctggcatga ggattgcatc agcagctgtg gccagacgga
     5941 aggtgttgac tttgtgggac cttgtgctcc atactgaaag gaggtggggt cacagtgaat
     6001 ttcacatccc ctcttgacca gggatagagg gctgggactc ttctccagag ggcatgcacc
     6061 tgggagctgt aggaagaatg cagtccaccc atgtgcaggg tggaggagtg tctctgtgcc
     6121 tgggaattag gaccccctgc tcctaaccat tagctcttga ccctgggact ccagctctgg
     6181 gcctcaatat aggctcccaa ggaattgctg tgttcggccc agcaccctgg gcccttcctg
     6241 agaacccttc cttgaggcct gggatggggt gggtctggag ctagcctgct ccccttggaa
     6301 tgcaataaag gcagcaactg tg
//
LOCUS       XM_032618182            4430 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphodiesterase 8A (PDE8A), transcript
            variant X1, mRNA.
ACCESSION   XM_032618182
VERSION     XM_032618182.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4430
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4430
                     /gene="PDE8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 33 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746651"
     CDS             719..3247
                     /gene="PDE8A"
                     /codon_start=1
                     /product="high affinity cAMP-specific and IBMX-insensitive
                     3',5'-cyclic phosphodiesterase 8A isoform X1"
                     /protein_id="XP_032474073.1"
                     /db_xref="GeneID:116746651"
                     /translation="MGCAQSIHASESRVVYHGGNEAEDAPVPAAPPLQPGGPRLPPVQ
                     TTAASARSCGSSLVESEPSGGSGSGSSIVNTVAVADIQFGPMRFHPDQLQVLLVFPKE
                     DKQCNGFCRACEKAGFKCTVIKETQTALACFLDKHHDIIIIDHRNPQQLDGEVLCRSI
                     RSSELSENTVIVGVVRRAVREESSVMSLIEAGFTRRYVENPSAMACYNELLQMEFGLV
                     HPQLKLRACNSMFTALEKSQEAIEITSEDHIVQYANPAFETTMGYESGELIGKDLAEV
                     PVNEKKADLLETINACIRIGKEWQGICSAKEKNGDNVQQNVKILPVIGQGGKIRHYVS
                     IVRACNGNNKATKIAECVQSDTHTDHQSGKHNDRRKSSLDVRTAASRTSKVSSQRRRS
                     STARIHSMKIEAPITKAINIISAAQESSPMPVTEALDRVLEILRTTELYSPQFDAKDD
                     DPHAIDLVGGLMSDVFRRPSRNEYVLSTKNLQQASSSVITPTSLHDIPSQITQAMENE
                     ECWDFDIFELEAATHKRPLIYLGLKIFARFGVCEVLKCSETTLRSWLQIIEANYHASN
                     PYHNSTHSADVLHATAYFLCKERIKQTLDPLDEVTALIAATVHDLDHPGRTNSFLCNA
                     GSELAILYNDTAVLERHHAALAFQLTTGDDKCNIFKNMERSDYRSLRQSIIDMVLATE
                     MTKHFEHVNKFVNSINKPLAALEEDGEADKNQEAIITMLRTPDNRSLIKRMLIKCADV
                     SNPCRPLEQCIEWAARISEEYFSQTDEEKRQDLPVVMPVFDRNTCSIPKSQISFIDYF
                     ITDMFAAWDAFVDLPELMQHLDNNFKYWKGLDEMKLRSLRPPPE"
     misc_feature    719..841
                     /gene="PDE8A"
                     /note="PDE8 phosphodiesterase; Region: PDE8; pfam08629"
                     /db_xref="CDD:400795"
     misc_feature    974..>1303
                     /gene="PDE8A"
                     /note="Response regulator c-di-GMP phosphodiesterase, RpfG
                     family, contains REC and HD-GYP domains [Signal
                     transduction mechanisms]; Region: RpfG; COG3437"
                     /db_xref="CDD:442663"
     misc_feature    1412..>1729
                     /gene="PDE8A"
                     /note="PAS domain [Signal transduction mechanisms];
                     Region: PAS; COG2202"
                     /db_xref="CDD:441804"
     misc_feature    2420..3175
                     /gene="PDE8A"
                     /note="3'5'-cyclic nucleotide phosphodiesterase; Region:
                     PDEase_I; pfam00233"
                     /db_xref="CDD:459723"
ORIGIN      
        1 cctggcaaac ggagccggag ccgctgcgcc tgcagctccc gggtgagcgt cgccgcttca
       61 gcgcttctcg acggcacggc ttcagatccg actggagccg aggtctctcc ttccctaccc
      121 gggcggacgc tgccttgccg ccccgaccgg cttcctccgg cccctactcc ttaacggcga
      181 gagatctagg ctagctttct tcgccaccag ccctgggatc aggagcattt attcgcgggg
      241 cggcaggcgg agtggcgcgg gtgccagagc ctcgagagtt ggctgctaaa gcgccgcgga
      301 gcgggaccgg gccgtgagcg ggcgcagcag ggagctcacc tccttcgggg gactcgccag
      361 ctctcgggtc gggagagctc agatctcctc cccttaaatt ccccggaagc gcggcgcggc
      421 agaggcgagc gcggcgatgt gagggaggag gccagcggct cccgcttcag gaagggcatg
      481 ttcggagggg cggccgcggt gtgctgcccg ccccaccgcc ccctccccac cgccgcagct
      541 gctgctcccg caccgcgata aaaggggcgg ccgcacttcc tggcgcgaga ccggcgctcg
      601 ccgccgcctg cccaggcggt gatgacacgg cgctcgcggc agccgcgagg cgccgggccg
      661 gccgtttact gaccgtttcg cggctactcg ccagcgtgtc ggcgacgcca ccgccagcat
      721 gggctgtgcc cagagcatcc acgcttccga gagccgggtg gtttaccacg gcggcaacga
      781 ggccgaggac gcgccggtcc ccgcggcgcc gccgttgcag cccggcgggc cgcgcctccc
      841 acccgtccag acgacggccg cctcggcccg gtcctgcggc tccagcctcg tggagtccga
      901 gccaagtggc ggcagcggca gcggcagcag catcgtcaac acggtagcag tagctgatat
      961 acaatttggc cccatgagat ttcatccaga tcagctccag gtacttttag tgtttcccaa
     1021 agaagataaa cagtgtaatg gattctgtag ggcatgtgaa aaagcagggt ttaagtgtac
     1081 agttatcaag gagactcaga cggcccttgc ctgtttcctg gacaaacatc atgacatcat
     1141 catcattgac cacagaaatc cccaacagct ggacggggag gtgctgtgca ggtctatcag
     1201 atcatcagaa ctctcagaaa acacagttat tgttggtgta gtacgcaggg cggttagaga
     1261 agagtcatct gtaatgtccc tcattgaggc tggctttaca aggaggtatg tagaaaaccc
     1321 cagcgccatg gcctgttaca atgaactgct ccagatggag tttggattgg tgcacccaca
     1381 gctgaaactc agggcttgta actcaatgtt cactgcatta gagaaaagtc aagaagcaat
     1441 tgaaattaca agtgaagacc acattgtaca gtatgcaaat ccagcatttg aaacaacaat
     1501 gggctatgag tcaggtgaat taatagggaa ggatttagca gaagtgcctg taaatgaaaa
     1561 aaaggctgat ttgctcgaga ctataaatgc atgcatcagg ataggcaagg aatggcaagg
     1621 aatttgctct gccaaagaga aaaacggaga taatgtacaa caaaatgtga agatactacc
     1681 tgtcatcgga cagggaggaa aaattagaca ctatgtgtcc attgtcagag catgcaatgg
     1741 caacaataag gctacgaaaa tagctgaatg tgttcagtct gacactcata cagatcatca
     1801 gtcaggcaaa cataacgaca ggaggaaaag ctcactagat gtcagaactg ctgcctctcg
     1861 aacaagcaaa gtttccagcc agagacgacg ctcctccacg gcccggatac attccatgaa
     1921 gatcgaggcg cccatcacca aggcaatcaa tatcatcagt gctgcccagg aaagcagtcc
     1981 catgcctgtg acagaagcct tagatcgtgt gctggaaatt ctgagaacca ctgaattata
     2041 ttccccacaa ttcgatgcta aggacgatga tcctcatgcc atcgaccttg ttgggggctt
     2101 aatgtctgac gtttttcgaa gaccatccag gaatgagtat gttctttcaa caaaaaacct
     2161 tcaacaggct tccagcagtg tgatcacccc cacctccctt cacgacatcc cgtcacagat
     2221 aactcaggcc atggaaaatg aggaatgctg ggactttgat atttttgaac tggaggctgc
     2281 cactcataaa aggcctttga tttatcttgg tctcaaaata tttgctcgct ttggagtctg
     2341 tgaagtctta aaatgctctg agacaacgct gagatcgtgg ttgcaaatta tcgaagccaa
     2401 ttatcatgct tctaacccct accacaattc tacacattct gccgacgtgc ttcacgccac
     2461 tgcctatttt ctctgcaagg agaggataaa gcaaacttta gatccacttg atgaggtcac
     2521 tgccctcatt gcagccactg tccatgacct ggaccacccc gggagaacca actccttcct
     2581 gtgcaatgct gggagtgagc tggccattct gtacaacgac actgctgtgc tcgagagaca
     2641 ccacgcggcc ttggccttcc agctgaccac tggtgatgat aagtgcaaca tctttaaaaa
     2701 catggagagg agtgactacc ggtcgctgcg ccagagtatt attgacatgg tcttagccac
     2761 agagatgaca aagcactttg agcacgtcaa caaatttgtc aacagcatca acaagccctt
     2821 ggcagcatta gaggaagatg gggaagctga taaaaatcaa gaagccataa tcactatgct
     2881 cagaactcca gacaaccgca gtttgatcaa acgaatgctg attaagtgtg ctgatgtgtc
     2941 caatccctgc cgacccctgg agcagtgcat tgagtgggcc gcacgtatct cagaagaata
     3001 tttttctcag actgatgaag agaagcgaca ggacttgcct gtggtgatgc cagtttttga
     3061 cagaaatacc tgcagcatcc ccaaatccca aatctctttc attgactact tcatcacaga
     3121 catgtttgct gcttgggacg cctttgtaga cctgcctgag ctaatgcagc atcttgacaa
     3181 caattttaaa tactggaagg gactggacga aatgaagctg cggagcctcc gcccacctcc
     3241 tgaatagtgg gcagcactgc ctagggccct gaggctgtgt ccctccagtc acttgggatt
     3301 cctgagggct gtcagagttc cttggtcctt tcatccccca gtctgcagag cctgtaagag
     3361 cacacaggga cgtcggcaac cttctggagc caccatctga tgccactgcc ataaagtgag
     3421 agtccactca aggtacctgg gcctgctgtg ggggcacttc agaaagtcac gtgagaacca
     3481 tggtttgcat tcacgtccgt taaaacatga gctcgggact gaccccgcga aggacggtga
     3541 tggatttcct gccagtgaca gtgagtgtct tgttgcagtt tctctgttat gttcagcact
     3601 taagaacagc taatggcaat cggatctttt ttcacatcac agaaggtgca atgacttctc
     3661 ttttaaaatt gaacagaaaa tgcaaagaaa ttttgaagtt gattattaat atcaattatt
     3721 aaaatgtttt atttattata agttcaatat tttctatgaa tttaaaaata cttcaaaaaa
     3781 aaaaaaaaat acttcaaagc caaagccaac tttaaatgcc ataaccaaat ttacatgatt
     3841 catattcatt aaatatgtat tactttgtgt acagacttgt tttcataatg caaatttaaa
     3901 atataaaatg acacattttt actgcactat agaaatattt gtgtatgtta aacattcctg
     3961 attgatgcta attgggaaaa gctgttttgt gggtgggtct gattctagaa gcactcaacg
     4021 agaagggctc ctcctgtaca gcaaccagag ctcagaaact gctctagttg tctgatgggc
     4081 tctgcaggtg actcccccaa agtgaaagaa actaggactt cacacttttt ccctaaaatt
     4141 ttataattga atttccaaaa gtctgcctta ttttatacag tgtttctatg aaatattctc
     4201 cataaaaaca gagaaaatgc agtatttagt gaattgacat tttataacca atctgttttc
     4261 atctgcattt tgcttcctga aatttataaa ggttctgtat cttcacattt tgaacaaaag
     4321 tagtaccata aaaaatgaca catgatgaca tgtcaaagcg cttgctgttt ccttttaaac
     4381 ttgttttgtt ccaggtaaaa gtgaaattaa actatttgtt tttaagacaa
//
LOCUS       XM_032618191            5879 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphodiesterase 8A (PDE8A), transcript
            variant X2, mRNA.
ACCESSION   XM_032618191
VERSION     XM_032618191.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5879
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5879
                     /gene="PDE8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 33 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746651"
     CDS             2174..4696
                     /gene="PDE8A"
                     /codon_start=1
                     /product="high affinity cAMP-specific and IBMX-insensitive
                     3',5'-cyclic phosphodiesterase 8A isoform X2"
                     /protein_id="XP_032474082.1"
                     /db_xref="GeneID:116746651"
                     /translation="MGCAQSVHASESRAVYHGGNEAEDAPVPAAPPLQPGGPRLPPVQ
                     TTAASARSCGSSLVESEGSGGSGSSNGSTVAVADIQFGPMRFHPDQLQVLLVFPKEDK
                     QCNGFCRACEKAGFKCTVIKETQTALACFLDKHHDIIIIDHRNPQQLDGEVLCRSIRS
                     SELSENTVIVGVVRRAVREESSVMSLIEAGFTRRYVENPSAMACYNELLQMEFGLVHP
                     QLKLRACNSMFTALEKSQEAIEITSEDHIVQYANPAFETTMGYESGELIGKDLAEVPV
                     NEKKADLLETINACIRIGKEWQGICSAKEKNGDNVQQNVKILPVIGQGGKIRHYVSIV
                     RACNGNNKATKIAECVQSDTHTDHQSGKHNDRRKSSLDVRTAASRTSKVSSQRRRSST
                     ARIHSMKIEAPITKAINIISAAQESSPMPVTEALDRVLEILRTTELYSPQFDAKDDDP
                     HAIDLVGGLMSDVFRRPSRNEYVLSTKNLQQASSSVITPTSLHDIPSQITQAMENEEC
                     WDFDIFELEAATHKRPLIYLGLKIFARFGVCEVLKCSETTLRSWLQIIEANYHASNPY
                     HNSTHSADVLHATAYFLCKERIKQTLDPLDEVTALIAATVHDLDHPGRTNSFLCNAGS
                     ELAILYNDTAVLERHHAALAFQLTTGDDKCNIFKNMERSDYRSLRQSIIDMVLATEMT
                     KHFEHVNKFVNSINKPLAALEEDGEADKNQEAIITMLRTPDNRSLIKRMLIKCADVSN
                     PCRPLEQCIEWAARISEEYFSQTDEEKRQDLPVVMPVFDRNTCSIPKSQISFIDYFIT
                     DMFAAWDAFVDLPELMQHLDNNFKYWKGLDEMKLRSLRPPPE"
     misc_feature    2174..2296
                     /gene="PDE8A"
                     /note="PDE8 phosphodiesterase; Region: PDE8; pfam08629"
                     /db_xref="CDD:400795"
     misc_feature    2423..>2752
                     /gene="PDE8A"
                     /note="Response regulator c-di-GMP phosphodiesterase, RpfG
                     family, contains REC and HD-GYP domains [Signal
                     transduction mechanisms]; Region: RpfG; COG3437"
                     /db_xref="CDD:442663"
     misc_feature    2861..>3178
                     /gene="PDE8A"
                     /note="PAS domain [Signal transduction mechanisms];
                     Region: PAS; COG2202"
                     /db_xref="CDD:441804"
     misc_feature    3869..4624
                     /gene="PDE8A"
                     /note="3'5'-cyclic nucleotide phosphodiesterase; Region:
                     PDEase_I; pfam00233"
                     /db_xref="CDD:459723"
ORIGIN      
        1 ttcaccaatt agtctttatt tagaagattg caaattctgc ctggaaaaat tacgttcaaa
       61 acccagcaaa acagaggcag aaaacactac aattgatggt aaaattcttt ttctgtgtct
      121 ttcaagacag cttctttgag ccgctggtac ttttataagg caaggaggca cacataagat
      181 tattgctaaa tgtgcctaaa cttgatagtg taagtcaggt gccagtggtt tgggcccgct
      241 cggctagtaa agagtgccaa tagcacaaaa ctgccctcgg gttacccggc ctttgagctc
      301 tgccgccctc ggggaaactg cccggtgcac acctccggcc cggaatatcc cggctcgagg
      361 ggcgccaggg ctgtggatct caggcttgtc ttgaagcccg agccgccgca gggaacccgc
      421 ctcctgagcc cgtctggcag tctcagcgct gcagcaggga ctccagcccg gagcacgcgt
      481 ccgggtcttt acagtatccg ggctggaggc gggagccctg gcacctcagg gtcgtgccag
      541 ggccgtgcta ggaaaggtgt ggacggcggg agaggaaagg gacccgtcgc gccggggtct
      601 cggttgaccg ggagcctcag ggagggcggg agaaagggtg ggtccgaggt gggctgctcc
      661 ggggtccttg atggacgccc aggagtgcca ccctctagct gatcgtggga ggagacccag
      721 gcacagagag gctatgtgat tcgctcaaag tcacacagcg agccgatggc gatatgtgtg
      781 gggtgtagtt ctaccaaagc gtctcgcgtc atcacaggcc tcgaccggca cggcggacgc
      841 ctggttctgc tcccgcaaac aagaagcctt tggggccttg ggcgccccgt cctttggtta
      901 agaggagagt aggacggcgt ccccagcttg cccctaaacg tagcttctta gcattccagc
      961 atcccagcct cccggtcgcc tgtgtaggcg ggcatggtgc tccaggtctt ggcgccagag
     1021 ggaaagcaca aggactgcgg cccccgacaa tgacgcccgg accccacctg cctgggacca
     1081 cccgaaacag aggtccttcc accggcctct tttaatggct ccgagatagt gaccgttatc
     1141 tctacttatc tattagttat gcagctgcta agttatggag ccggagccgg ttttcgaacc
     1201 cattggtctg ggttttggtg gtcgcaggcc ccagatcaga gcccaccggc ccggggtggc
     1261 tgtgtgtggc cttgggcaag tctttctccc cgcagccgag tagcgcgccc cttccgtcgt
     1321 ggccgcgcac gctcagtggc gggaggggcc cgggagtagg cggcgggcgc cccagctgct
     1381 ttgcattgac gccagcaccc gctagaggtt acagctgggg gctgggcgcg gcgtgctgcc
     1441 gggaaaacct ggcccggcaa acggagccgg agccgctccg cccgcagctc ccgggtgagc
     1501 gccgccgctt cagcgcttct cgacggcacg gcttcagatc cgactggagc cgaggtctct
     1561 ccttccctac ccgggcggac gctgcctcgc cgccccgacc ggcttcctcc ggcccctacc
     1621 cctcaacggc aagagatcta ggctagcttt ctccgccacc agccctggga ccaggagcat
     1681 ttatttattc gcggggcggc aggcggagcg gcctgggtgc ccgagcctcg agagtcggct
     1741 gctaaagcgc cgcggagcgg gaacggggcg gtgagcgggc gcagcaggga actcacctcc
     1801 ctcgggggtc gtgccgcccc acggcgcgga ctggcctgct ctcgggtcgg gagagctcaa
     1861 atctcctccc ccgaaattcc ccggaagcgc ggcgcggccg aggcgagcgc ggcgatgtga
     1921 gggaagaggc taacggctcc cgcttcagga agggcatgtt cggaggggcg gccgcggtgc
     1981 gctgcccgcc ccaccgcccc ctccccaccg ccgcagctgc tgctcccgca ccgcgataaa
     2041 aggggcggcc gcacttcctg gcgcgagacc ggcgctcgcc gccgtctgct caggcggccg
     2101 cgaggcgccg ggctggccgt ttactgaccg tttcgcggct acccgccagc gtgtcggcga
     2161 cgccgcctcc agcatgggct gtgcccagag cgtccacgct tccgagagcc gggcggtgta
     2221 ccacggcggc aacgaggccg aggacgcgcc ggtccccgcg gcgccgccgt tgcagcccgg
     2281 cgggccgcgc ctcccacccg tccagacgac ggccgcctcg gcccggtcct gcggctccag
     2341 cctcgtggag tccgagggaa gcggcggcag cggcagcagc aacggcagca cggtagcagt
     2401 agctgatata caatttggcc ccatgagatt tcatccagat cagctccagg tacttttagt
     2461 gtttcccaaa gaagataaac agtgtaatgg attctgtagg gcatgtgaaa aagcagggtt
     2521 taagtgtaca gttatcaagg agactcagac ggcccttgcc tgtttcctgg acaaacatca
     2581 tgacatcatc atcattgacc acagaaatcc ccaacagctg gacggggagg tgctgtgcag
     2641 gtctatcaga tcatcagaac tctcagaaaa cacagttatt gttggtgtag tacgcagggc
     2701 ggttagagaa gagtcatctg taatgtccct cattgaggct ggctttacaa ggaggtatgt
     2761 agaaaacccc agcgccatgg cctgttacaa tgaactgctc cagatggagt ttggattggt
     2821 gcacccacag ctgaaactca gggcttgtaa ctcaatgttc actgcattag agaaaagtca
     2881 agaagcaatt gaaattacaa gtgaagacca cattgtacag tatgcaaatc cagcatttga
     2941 aacaacaatg ggctatgagt caggtgaatt aatagggaag gatttagcag aagtgcctgt
     3001 aaatgaaaaa aaggctgatt tgctcgagac tataaatgca tgcatcagga taggcaagga
     3061 atggcaagga atttgctctg ccaaagagaa aaacggagat aatgtacaac aaaatgtgaa
     3121 gatactacct gtcatcggac agggaggaaa aattagacac tatgtgtcca ttgtcagagc
     3181 atgcaatggc aacaataagg ctacgaaaat agctgaatgt gttcagtctg acactcatac
     3241 agatcatcag tcaggcaaac ataacgacag gaggaaaagc tcactagatg tcagaactgc
     3301 tgcctctcga acaagcaaag tttccagcca gagacgacgc tcctccacgg cccggataca
     3361 ttccatgaag atcgaggcgc ccatcaccaa ggcaatcaat atcatcagtg ctgcccagga
     3421 aagcagtccc atgcctgtga cagaagcctt agatcgtgtg ctggaaattc tgagaaccac
     3481 tgaattatat tccccacaat tcgatgctaa ggacgatgat cctcatgcca tcgaccttgt
     3541 tgggggctta atgtctgacg tttttcgaag accatccagg aatgagtatg ttctttcaac
     3601 aaaaaacctt caacaggctt ccagcagtgt gatcaccccc acctcccttc acgacatccc
     3661 gtcacagata actcaggcca tggaaaatga ggaatgctgg gactttgata tttttgaact
     3721 ggaggctgcc actcataaaa ggcctttgat ttatcttggt ctcaaaatat ttgctcgctt
     3781 tggagtctgt gaagtcttaa aatgctctga gacaacgctg agatcgtggt tgcaaattat
     3841 cgaagccaat tatcatgctt ctaaccccta ccacaattct acacattctg ccgacgtgct
     3901 tcacgccact gcctattttc tctgcaagga gaggataaag caaactttag atccacttga
     3961 tgaggtcact gccctcattg cagccactgt ccatgacctg gaccaccccg ggagaaccaa
     4021 ctccttcctg tgcaatgctg ggagtgagct ggccattctg tacaacgaca ctgctgtgct
     4081 cgagagacac cacgcggcct tggccttcca gctgaccact ggtgatgata agtgcaacat
     4141 ctttaaaaac atggagagga gtgactaccg gtcgctgcgc cagagtatta ttgacatggt
     4201 cttagccaca gagatgacaa agcactttga gcacgtcaac aaatttgtca acagcatcaa
     4261 caagcccttg gcagcattag aggaagatgg ggaagctgat aaaaatcaag aagccataat
     4321 cactatgctc agaactccag acaaccgcag tttgatcaaa cgaatgctga ttaagtgtgc
     4381 tgatgtgtcc aatccctgcc gacccctgga gcagtgcatt gagtgggccg cacgtatctc
     4441 agaagaatat ttttctcaga ctgatgaaga gaagcgacag gacttgcctg tggtgatgcc
     4501 agtttttgac agaaatacct gcagcatccc caaatcccaa atctctttca ttgactactt
     4561 catcacagac atgtttgctg cttgggacgc ctttgtagac ctgcctgagc taatgcagca
     4621 tcttgacaac aattttaaat actggaaggg actggacgaa atgaagctgc ggagcctccg
     4681 cccacctcct gaatagtggg cagcactgcc tagggccctg aggctgtgtc cctccagtca
     4741 cttgggattc ctgagggctg tcagagttcc ttggtccttt catcccccag tctgcagagc
     4801 ctgtaagagc acacagggac gtcggcaacc ttctggagcc accatctgat gccactgcca
     4861 taaagtgaga gtccactcaa ggtacctggg cctgctgtgg gggcacttca gaaagtcacg
     4921 tgagaaccat ggtttgcatt cacgtccgtt aaaacatgag ctcgggactg accccgcgaa
     4981 ggacggtgat ggatttcctg ccagtgacag tgagtgtctt gttgcagttt ctctgttatg
     5041 ttcagcactt aagaacagct aatggcaatc ggatcttttt tcacatcaca gaaggtgcaa
     5101 tgacttctct tttaaaattg aacagaaaat gcaaagaaat tttgaagttg attattaata
     5161 tcaattatta aaatgtttta tttattataa gttcaatatt ttctatgaat ttaaaaatac
     5221 ttcaaaaaaa aaaaaaaata cttcaaagcc aaagccaact ttaaatgcca taaccaaatt
     5281 tacatgattc atattcatta aatatgtatt actttgtgta cagacttgtt ttcataatgc
     5341 aaatttaaaa tataaaatga cacattttta ctgcactata gaaatatttg tgtatgttaa
     5401 acattcctga ttgatgctaa ttgggaaaag ctgttttgtg ggtgggtctg attctagaag
     5461 cactcaacga gaagggctcc tcctgtacag caaccagagc tcagaaactg ctctagttgt
     5521 ctgatgggct ctgcaggtga ctcccccaaa gtgaaagaaa ctaggacttc acactttttc
     5581 cctaaaattt tataattgaa tttccaaaag tctgccttat tttatacagt gtttctatga
     5641 aatattctcc ataaaaacag agaaaatgca gtatttagtg aattgacatt ttataaccaa
     5701 tctgttttca tctgcatttt gcttcctgaa atttataaag gttctgtatc ttcacatttt
     5761 gaacaaaagt agtaccataa aaaatgacac atgatgacat gtcaaagcgc ttgctgtttc
     5821 cttttaaact tgttttgttc caggtaaaag tgaaattaaa ctatttgttt ttaagacaa
//
LOCUS       XM_032618201            4242 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphodiesterase 8A (PDE8A), transcript
            variant X3, mRNA.
ACCESSION   XM_032618201
VERSION     XM_032618201.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4242
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4242
                     /gene="PDE8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 33
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746651"
     CDS             537..3059
                     /gene="PDE8A"
                     /codon_start=1
                     /product="high affinity cAMP-specific and IBMX-insensitive
                     3',5'-cyclic phosphodiesterase 8A isoform X3"
                     /protein_id="XP_032474092.1"
                     /db_xref="GeneID:116746651"
                     /translation="MGCAQSVHASESRAVYHGGNEAEDAPVPAAPPLQPGGPRLPPVQ
                     TTAASARSCGSSLVESEGSGGSGSSNGSTVAVADIQFGPMRFHPDQLQVLLVFPKEDK
                     QCNGFCRACEKAGFKCTVIKETQTALACFLDKHHDIIIIDHRNPQQLDGEVLCRSIRS
                     SELSENTVIVGVVRRAVREESSVMSLIEAGFTRRYVENPSAMACYNELLQMEFGLVHP
                     QLKLRACNSMFTALEKSQEAIEITSEDHIVQYANPAFETTMGYESGELIGKDLAEVPV
                     NEKKADLLETINACIRIGKEWQGICSAKEKNGDNVQQNVKILPVIGQGGKIRHYVSIV
                     RACNGNNKATKIAECVQSDTHTDHQSGKHNDRRKSSLDVRTAASRTSKVSSQRRRSST
                     ARIHSMKIEAPITKAINIISAAQESSPMPVTEALDRVLEILRTTELYSPQFDAKDDDP
                     HAIDLVGGLMSDVFRRPSRNEYVLSTKNLQQASSSVITPTSLHDIPSQITQAMENEEC
                     WDFDIFELEAATHKRPLIYLGLKIFARFGVCEVLKCSETTLRSWLQIIEANYHASNPY
                     HNSTHSADVLHATAYFLCKERIKQTLDPLDEVTALIAATVHDLDHPGRTNSFLCNAGS
                     ELAILYNDTAVLERHHAALAFQLTTGDDKCNIFKNMERSDYRSLRQSIIDMVLATEMT
                     KHFEHVNKFVNSINKPLAALEEDGEADKNQEAIITMLRTPDNRSLIKRMLIKCADVSN
                     PCRPLEQCIEWAARISEEYFSQTDEEKRQDLPVVMPVFDRNTCSIPKSQISFIDYFIT
                     DMFAAWDAFVDLPELMQHLDNNFKYWKGLDEMKLRSLRPPPE"
     misc_feature    537..659
                     /gene="PDE8A"
                     /note="PDE8 phosphodiesterase; Region: PDE8; pfam08629"
                     /db_xref="CDD:400795"
     misc_feature    786..>1115
                     /gene="PDE8A"
                     /note="Response regulator c-di-GMP phosphodiesterase, RpfG
                     family, contains REC and HD-GYP domains [Signal
                     transduction mechanisms]; Region: RpfG; COG3437"
                     /db_xref="CDD:442663"
     misc_feature    1224..>1541
                     /gene="PDE8A"
                     /note="PAS domain [Signal transduction mechanisms];
                     Region: PAS; COG2202"
                     /db_xref="CDD:441804"
     misc_feature    2232..2987
                     /gene="PDE8A"
                     /note="3'5'-cyclic nucleotide phosphodiesterase; Region:
                     PDEase_I; pfam00233"
                     /db_xref="CDD:459723"
ORIGIN      
        1 ctaggctagc tttctccgcc accagccctg ggaccaggag catttattta ttcgcggggc
       61 ggcaggcgga gcggcctggg tgcccgagcc tcgagagtcg gctgctaaag cgccgcggag
      121 cgggaacggg gcggtgagcg ggcgcagcag ggaactcacc tccctcgggg gtcgtgccgc
      181 cccacggcgc ggactggcct gctctcgggt cgggagagct caaatctcct cccccgaaat
      241 tccccggaag cgcggcgcgg ccgaggcgag cgcggcgatg tgagggaaga ggctaacggc
      301 tcccgcttca ggaagggcat gttcggaggg gcggccgcgg tgcgctgccc gccccaccgc
      361 cccctcccca ccgccgcagc tgctgctccc gcaccgcgat aaaaggggcg gccgcacttc
      421 ctggcgcgag accggcgctc gccgccgtct gctcaggcgg ccgcgaggcg ccgggctggc
      481 cgtttactga ccgtttcgcg gctacccgcc agcgtgtcgg cgacgccgcc tccagcatgg
      541 gctgtgccca gagcgtccac gcttccgaga gccgggcggt gtaccacggc ggcaacgagg
      601 ccgaggacgc gccggtcccc gcggcgccgc cgttgcagcc cggcgggccg cgcctcccac
      661 ccgtccagac gacggccgcc tcggcccggt cctgcggctc cagcctcgtg gagtccgagg
      721 gaagcggcgg cagcggcagc agcaacggca gcacggtagc agtagctgat atacaatttg
      781 gccccatgag atttcatcca gatcagctcc aggtactttt agtgtttccc aaagaagata
      841 aacagtgtaa tggattctgt agggcatgtg aaaaagcagg gtttaagtgt acagttatca
      901 aggagactca gacggccctt gcctgtttcc tggacaaaca tcatgacatc atcatcattg
      961 accacagaaa tccccaacag ctggacgggg aggtgctgtg caggtctatc agatcatcag
     1021 aactctcaga aaacacagtt attgttggtg tagtacgcag ggcggttaga gaagagtcat
     1081 ctgtaatgtc cctcattgag gctggcttta caaggaggta tgtagaaaac cccagcgcca
     1141 tggcctgtta caatgaactg ctccagatgg agtttggatt ggtgcaccca cagctgaaac
     1201 tcagggcttg taactcaatg ttcactgcat tagagaaaag tcaagaagca attgaaatta
     1261 caagtgaaga ccacattgta cagtatgcaa atccagcatt tgaaacaaca atgggctatg
     1321 agtcaggtga attaataggg aaggatttag cagaagtgcc tgtaaatgaa aaaaaggctg
     1381 atttgctcga gactataaat gcatgcatca ggataggcaa ggaatggcaa ggaatttgct
     1441 ctgccaaaga gaaaaacgga gataatgtac aacaaaatgt gaagatacta cctgtcatcg
     1501 gacagggagg aaaaattaga cactatgtgt ccattgtcag agcatgcaat ggcaacaata
     1561 aggctacgaa aatagctgaa tgtgttcagt ctgacactca tacagatcat cagtcaggca
     1621 aacataacga caggaggaaa agctcactag atgtcagaac tgctgcctct cgaacaagca
     1681 aagtttccag ccagagacga cgctcctcca cggcccggat acattccatg aagatcgagg
     1741 cgcccatcac caaggcaatc aatatcatca gtgctgccca ggaaagcagt cccatgcctg
     1801 tgacagaagc cttagatcgt gtgctggaaa ttctgagaac cactgaatta tattccccac
     1861 aattcgatgc taaggacgat gatcctcatg ccatcgacct tgttgggggc ttaatgtctg
     1921 acgtttttcg aagaccatcc aggaatgagt atgttctttc aacaaaaaac cttcaacagg
     1981 cttccagcag tgtgatcacc cccacctccc ttcacgacat cccgtcacag ataactcagg
     2041 ccatggaaaa tgaggaatgc tgggactttg atatttttga actggaggct gccactcata
     2101 aaaggccttt gatttatctt ggtctcaaaa tatttgctcg ctttggagtc tgtgaagtct
     2161 taaaatgctc tgagacaacg ctgagatcgt ggttgcaaat tatcgaagcc aattatcatg
     2221 cttctaaccc ctaccacaat tctacacatt ctgccgacgt gcttcacgcc actgcctatt
     2281 ttctctgcaa ggagaggata aagcaaactt tagatccact tgatgaggtc actgccctca
     2341 ttgcagccac tgtccatgac ctggaccacc ccgggagaac caactccttc ctgtgcaatg
     2401 ctgggagtga gctggccatt ctgtacaacg acactgctgt gctcgagaga caccacgcgg
     2461 ccttggcctt ccagctgacc actggtgatg ataagtgcaa catctttaaa aacatggaga
     2521 ggagtgacta ccggtcgctg cgccagagta ttattgacat ggtcttagcc acagagatga
     2581 caaagcactt tgagcacgtc aacaaatttg tcaacagcat caacaagccc ttggcagcat
     2641 tagaggaaga tggggaagct gataaaaatc aagaagccat aatcactatg ctcagaactc
     2701 cagacaaccg cagtttgatc aaacgaatgc tgattaagtg tgctgatgtg tccaatccct
     2761 gccgacccct ggagcagtgc attgagtggg ccgcacgtat ctcagaagaa tatttttctc
     2821 agactgatga agagaagcga caggacttgc ctgtggtgat gccagttttt gacagaaata
     2881 cctgcagcat ccccaaatcc caaatctctt tcattgacta cttcatcaca gacatgtttg
     2941 ctgcttggga cgcctttgta gacctgcctg agctaatgca gcatcttgac aacaatttta
     3001 aatactggaa gggactggac gaaatgaagc tgcggagcct ccgcccacct cctgaatagt
     3061 gggcagcact gcctagggcc ctgaggctgt gtccctccag tcacttggga ttcctgaggg
     3121 ctgtcagagt tccttggtcc tttcatcccc cagtctgcag agcctgtaag agcacacagg
     3181 gacgtcggca accttctgga gccaccatct gatgccactg ccataaagtg agagtccact
     3241 caaggtacct gggcctgctg tgggggcact tcagaaagtc acgtgagaac catggtttgc
     3301 attcacgtcc gttaaaacat gagctcggga ctgaccccgc gaaggacggt gatggatttc
     3361 ctgccagtga cagtgagtgt cttgttgcag tttctctgtt atgttcagca cttaagaaca
     3421 gctaatggca atcggatctt ttttcacatc acagaaggtg caatgacttc tcttttaaaa
     3481 ttgaacagaa aatgcaaaga aattttgaag ttgattatta atatcaatta ttaaaatgtt
     3541 ttatttatta taagttcaat attttctatg aatttaaaaa tacttcaaaa aaaaaaaaaa
     3601 atacttcaaa gccaaagcca actttaaatg ccataaccaa atttacatga ttcatattca
     3661 ttaaatatgt attactttgt gtacagactt gttttcataa tgcaaattta aaatataaaa
     3721 tgacacattt ttactgcact atagaaatat ttgtgtatgt taaacattcc tgattgatgc
     3781 taattgggaa aagctgtttt gtgggtgggt ctgattctag aagcactcaa cgagaagggc
     3841 tcctcctgta cagcaaccag agctcagaaa ctgctctagt tgtctgatgg gctctgcagg
     3901 tgactccccc aaagtgaaag aaactaggac ttcacacttt ttccctaaaa ttttataatt
     3961 gaatttccaa aagtctgcct tattttatac agtgtttcta tgaaatattc tccataaaaa
     4021 cagagaaaat gcagtattta gtgaattgac attttataac caatctgttt tcatctgcat
     4081 tttgcttcct gaaatttata aaggttctgt atcttcacat tttgaacaaa agtagtacca
     4141 taaaaaatga cacatgatga catgtcaaag cgcttgctgt ttccttttaa acttgttttg
     4201 ttccaggtaa aagtgaaatt aaactatttg tttttaagac aa
//
LOCUS       XM_032618206            3256 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphodiesterase 8A (PDE8A), transcript
            variant X4, mRNA.
ACCESSION   XM_032618206
VERSION     XM_032618206.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3256
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3256
                     /gene="PDE8A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 12 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746651"
     CDS             100..2073
                     /gene="PDE8A"
                     /codon_start=1
                     /product="high affinity cAMP-specific and IBMX-insensitive
                     3',5'-cyclic phosphodiesterase 8A isoform X4"
                     /protein_id="XP_032474097.1"
                     /db_xref="GeneID:116746651"
                     /translation="MSLIEAGFTRRYVENPSAMACYNELLQMEFGLVHPQLKLRACNS
                     MFTALEKSQEAIEITSEDHIVQYANPAFETTMGYESGELIGKDLAEVPVNEKKADLLE
                     TINACIRIGKEWQGICSAKEKNGDNVQQNVKILPVIGQGGKIRHYVSIVRACNGNNKA
                     TKIAECVQSDTHTDHQSGKHNDRRKSSLDVRTAASRTSKVSSQRRRSSTARIHSMKIE
                     APITKAINIISAAQESSPMPVTEALDRVLEILRTTELYSPQFDAKDDDPHAIDLVGGL
                     MSDVFRRPSRNEYVLSTKNLQQASSSVITPTSLHDIPSQITQAMENEECWDFDIFELE
                     AATHKRPLIYLGLKIFARFGVCEVLKCSETTLRSWLQIIEANYHASNPYHNSTHSADV
                     LHATAYFLCKERIKQTLDPLDEVTALIAATVHDLDHPGRTNSFLCNAGSELAILYNDT
                     AVLERHHAALAFQLTTGDDKCNIFKNMERSDYRSLRQSIIDMVLATEMTKHFEHVNKF
                     VNSINKPLAALEEDGEADKNQEAIITMLRTPDNRSLIKRMLIKCADVSNPCRPLEQCI
                     EWAARISEEYFSQTDEEKRQDLPVVMPVFDRNTCSIPKSQISFIDYFITDMFAAWDAF
                     VDLPELMQHLDNNFKYWKGLDEMKLRSLRPPPE"
     misc_feature    238..>555
                     /gene="PDE8A"
                     /note="PAS domain [Signal transduction mechanisms];
                     Region: PAS; COG2202"
                     /db_xref="CDD:441804"
     misc_feature    1246..2001
                     /gene="PDE8A"
                     /note="3'5'-cyclic nucleotide phosphodiesterase; Region:
                     PDEase_I; pfam00233"
                     /db_xref="CDD:459723"
ORIGIN      
        1 atccagatca gctccaggtc tatcagatca tcagaactct cagaaaacac agttattgtt
       61 ggtgtagtac gcagggcggt tagagaagag tcatctgtaa tgtccctcat tgaggctggc
      121 tttacaagga ggtatgtaga aaaccccagc gccatggcct gttacaatga actgctccag
      181 atggagtttg gattggtgca cccacagctg aaactcaggg cttgtaactc aatgttcact
      241 gcattagaga aaagtcaaga agcaattgaa attacaagtg aagaccacat tgtacagtat
      301 gcaaatccag catttgaaac aacaatgggc tatgagtcag gtgaattaat agggaaggat
      361 ttagcagaag tgcctgtaaa tgaaaaaaag gctgatttgc tcgagactat aaatgcatgc
      421 atcaggatag gcaaggaatg gcaaggaatt tgctctgcca aagagaaaaa cggagataat
      481 gtacaacaaa atgtgaagat actacctgtc atcggacagg gaggaaaaat tagacactat
      541 gtgtccattg tcagagcatg caatggcaac aataaggcta cgaaaatagc tgaatgtgtt
      601 cagtctgaca ctcatacaga tcatcagtca ggcaaacata acgacaggag gaaaagctca
      661 ctagatgtca gaactgctgc ctctcgaaca agcaaagttt ccagccagag acgacgctcc
      721 tccacggccc ggatacattc catgaagatc gaggcgccca tcaccaaggc aatcaatatc
      781 atcagtgctg cccaggaaag cagtcccatg cctgtgacag aagccttaga tcgtgtgctg
      841 gaaattctga gaaccactga attatattcc ccacaattcg atgctaagga cgatgatcct
      901 catgccatcg accttgttgg gggcttaatg tctgacgttt ttcgaagacc atccaggaat
      961 gagtatgttc tttcaacaaa aaaccttcaa caggcttcca gcagtgtgat cacccccacc
     1021 tcccttcacg acatcccgtc acagataact caggccatgg aaaatgagga atgctgggac
     1081 tttgatattt ttgaactgga ggctgccact cataaaaggc ctttgattta tcttggtctc
     1141 aaaatatttg ctcgctttgg agtctgtgaa gtcttaaaat gctctgagac aacgctgaga
     1201 tcgtggttgc aaattatcga agccaattat catgcttcta acccctacca caattctaca
     1261 cattctgccg acgtgcttca cgccactgcc tattttctct gcaaggagag gataaagcaa
     1321 actttagatc cacttgatga ggtcactgcc ctcattgcag ccactgtcca tgacctggac
     1381 caccccggga gaaccaactc cttcctgtgc aatgctggga gtgagctggc cattctgtac
     1441 aacgacactg ctgtgctcga gagacaccac gcggccttgg ccttccagct gaccactggt
     1501 gatgataagt gcaacatctt taaaaacatg gagaggagtg actaccggtc gctgcgccag
     1561 agtattattg acatggtctt agccacagag atgacaaagc actttgagca cgtcaacaaa
     1621 tttgtcaaca gcatcaacaa gcccttggca gcattagagg aagatgggga agctgataaa
     1681 aatcaagaag ccataatcac tatgctcaga actccagaca accgcagttt gatcaaacga
     1741 atgctgatta agtgtgctga tgtgtccaat ccctgccgac ccctggagca gtgcattgag
     1801 tgggccgcac gtatctcaga agaatatttt tctcagactg atgaagagaa gcgacaggac
     1861 ttgcctgtgg tgatgccagt ttttgacaga aatacctgca gcatccccaa atcccaaatc
     1921 tctttcattg actacttcat cacagacatg tttgctgctt gggacgcctt tgtagacctg
     1981 cctgagctaa tgcagcatct tgacaacaat tttaaatact ggaagggact ggacgaaatg
     2041 aagctgcgga gcctccgccc acctcctgaa tagtgggcag cactgcctag ggccctgagg
     2101 ctgtgtccct ccagtcactt gggattcctg agggctgtca gagttccttg gtcctttcat
     2161 cccccagtct gcagagcctg taagagcaca cagggacgtc ggcaaccttc tggagccacc
     2221 atctgatgcc actgccataa agtgagagtc cactcaaggt acctgggcct gctgtggggg
     2281 cacttcagaa agtcacgtga gaaccatggt ttgcattcac gtccgttaaa acatgagctc
     2341 gggactgacc ccgcgaagga cggtgatgga tttcctgcca gtgacagtga gtgtcttgtt
     2401 gcagtttctc tgttatgttc agcacttaag aacagctaat ggcaatcgga tcttttttca
     2461 catcacagaa ggtgcaatga cttctctttt aaaattgaac agaaaatgca aagaaatttt
     2521 gaagttgatt attaatatca attattaaaa tgttttattt attataagtt caatattttc
     2581 tatgaattta aaaatacttc aaaaaaaaaa aaaaatactt caaagccaaa gccaacttta
     2641 aatgccataa ccaaatttac atgattcata ttcattaaat atgtattact ttgtgtacag
     2701 acttgttttc ataatgcaaa tttaaaatat aaaatgacac atttttactg cactatagaa
     2761 atatttgtgt atgttaaaca ttcctgattg atgctaattg ggaaaagctg ttttgtgggt
     2821 gggtctgatt ctagaagcac tcaacgagaa gggctcctcc tgtacagcaa ccagagctca
     2881 gaaactgctc tagttgtctg atgggctctg caggtgactc ccccaaagtg aaagaaacta
     2941 ggacttcaca ctttttccct aaaattttat aattgaattt ccaaaagtct gccttatttt
     3001 atacagtgtt tctatgaaat attctccata aaaacagaga aaatgcagta tttagtgaat
     3061 tgacatttta taaccaatct gttttcatct gcattttgct tcctgaaatt tataaaggtt
     3121 ctgtatcttc acattttgaa caaaagtagt accataaaaa atgacacatg atgacatgtc
     3181 aaagcgcttg ctgtttcctt ttaaacttgt tttgttccag gtaaaagtga aattaaacta
     3241 tttgttttta agacaa
//
LOCUS       XR_004347838            3015 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746667
            (LOC116746667), ncRNA.
ACCESSION   XR_004347838
VERSION     XR_004347838.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3015
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3015
                     /gene="LOC116746667"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746667"
     ncRNA           1..3015
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746667"
                     /product="uncharacterized LOC116746667"
                     /db_xref="GeneID:116746667"
ORIGIN      
        1 tgcggtgcgt gagcacacta gtcagctcag ccatcctccc acccagccgg cgtttcaagg
       61 gcctgatcca gtgcggcaat ggtgagtgag agacagcccc cttcacagag aagggacaag
      121 tggctgctgc tcatcttggg ccaaattatt tcatttgaaa aagttatgaa cacgcttgag
      181 gtaaaaaaaa gagctctggg atgagttttt tatgtacttt gatagacgct tccagaacat
      241 cttcaggatt ccagaaagat ttgtaaaaaa tactgaaaat ataattaaga tcctgggggg
      301 aaaggcaagt atatcttgaa agatataaag gagtttcttg ttctttttat tcataaggtc
      361 gctttcatca aagggtcctg gagaaaagga tgaggggatg cctggagggt gacgatgaag
      421 caggaggtct tcctggaatg aggcgggaat gaggtgcgat tagaatcacc gagaggtccc
      481 tgctggagca ggcaaccagg gctgagagtt aagcagacag tcacacgagg ggcaggatga
      541 gggggactga ctgtaggaca agtaaggccg gggcgggcct ggctagaagg gctggagcca
      601 tcctctggct gtggaaggca cagctgtcct caggggcacc tggatcattg ttcctgatgg
      661 tccgggcagg ctgccctgtt gggccaggca tagtgagaag atgacagagg ggtggcgatc
      721 ctgggacgag ataaattgtt gaccagtcgt ggcctgtgga gagccagtca gtgagagcaa
      781 gggctgagga caggaggtac gtggtgtgct tggccatctg ccagaagcct gactccggtg
      841 gctgaactct gtgggccatc tggggctgtg ggagagtgga ggacatttct tgagcagcca
      901 gcactgggac aagaattcag gtgttcagcg ggagcaaaag aaaacctact cttggggctg
      961 ggagcctgtc cgtccaactc ttacccctgg aactgttctc acagggcaaa ctgggccagt
     1021 cccccttgtt gatcttgaca actggccagg agctgcctcc cctgttccat tccacttctg
     1081 ttctgctgtc ttggccgagg cctggcaatc accagcaggg ccgcagggac tggttagaag
     1141 tcaccttgcc ctgcacaaag gtggatccga ggcccgggcg actggaagaa ctaggcctca
     1201 cagctaacgg caggtgactt tccctggaag tgacaatgac tcactacagc tctcaacatg
     1261 gaatctccac ttgggggcag caggtaacct ttggggtttt cctaggaggg actgtaccta
     1321 gcactgtgct gcagagatgt acttatgcta ggtgggtgtt gagggtgccg gggacagggc
     1381 taagaaagag gcctgtgctc cctgtgttca ggtggatggt gctagactat gggtcagggc
     1441 agaagccagc agtaagagcc cctgccgctc caggccaggg agccaagtcg cacacgcttg
     1501 accaggattg tacaggccag ggagccctga gaggcagggc agagactgtc tacaccagtt
     1561 gtctggccag gagcacactc caggaggtgt ggaaggtagg gtgagggtgc tctgggaaga
     1621 gactaagcag ggaatactga caagtcttgg cctctgctgg ctggtgaggc ctctgctgtt
     1681 aggccacagg ctggcagccc cgtcccccag tgctgtcgca gaaaattgca gggttagctc
     1741 tacgtgagtc tctgccctgg tgtgtatggg aaggggtgga gggtgcagga atagcctcag
     1801 gttcacagcc cactggcctg tctggctcag agagcagtac cacagggtgg gtgctctcct
     1861 ggctcccccc ctgtcgtgct ggataatgaa ccagctctct tgggaaagcc atagcagagg
     1921 ctcactgagc tcagcagttc atggctccag aggcttttct gtcagtgctg cactctaggc
     1981 cttccctccc ctccacatgg aagcagctgc cttgttgaaa ggcaatgaaa acgctcatgc
     2041 ttgtatttct tctctttggc ccaatgtgac aggtacatgg agcttctcag gcccttattc
     2101 gcttttgaag accactgttt gccaatgaag tcctccgtgc ccatgcccca cttctaggcc
     2161 accaatgaga tctccatgcc tgggagacag agattctaca gtaaccaagt gaatctccaa
     2221 tcaagaaaaa gtcattcaaa atggaattaa gaagctgcat cttacctgag aaaaatattc
     2281 ttctgagata cgtgcggccc actcaatgca ctgctccagg ggtcggcagg gattggacac
     2341 atcagcacac ttaatcagca ttcgtttgat caaactgcgg ttgtctggag ttctgagcat
     2401 agtgattatg gcttcttgat ttttatcagc ttcctaaaac gtgtgtgact acactgacta
     2461 cagtactgcc agctggaaac tgttttcttt catggtactt tgtccctgct ctgacccact
     2521 ggatactgat ttccagtctc tcagaagtaa ctccaagtac cgacaaaaga gatgagaaac
     2581 gttgactgtc aagtggaatg gaagacagcg aagtctagga acttcccaga atagatgcag
     2641 gaaacccaag tctacgagac caacagagga cagctgctgc taccacagaa tatgcacggc
     2701 agggcgtggc tggtgagaga cctcatgggc tccaacggac cccaaaatgc gcaagaagag
     2761 gggaaggggg caactgttga gaaagggctc aggaatggcc cacccatcta aaggtagttt
     2821 atctaaaacc tgactctccc ttcagagttt tcatatctat ttttgtatat cctatttttt
     2881 ttttccttcc aagtttttgt acttttaact ttttaaccaa tggaaattaa attcagtgag
     2941 cccaatggtg gtaatgataa cactcgtgat atcccaggcc catgcttccc cacaacacat
     3001 agggataagg gcccc
//
LOCUS       XM_032618226            3242 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus L-2-hydroxyglutarate dehydrogenase
            (L2HGDH), mRNA.
ACCESSION   XM_032618226
VERSION     XM_032618226.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                VOSU01000015.1     127882861-127882935 c
            76-77               "NN"               1-2
            78-155              VOSU01000015.1     127882783-127882860 c
            156-271             VOSU01000015.1     127875915-127876030 c
            272-423             VOSU01000015.1     127875082-127875233 c
            424-555             VOSU01000015.1     127869807-127869938 c
            556-718             VOSU01000015.1     127854110-127854272 c
            719-753             VOSU01000015.1     127852795-127852829 c
            754-921             VOSU01000015.1     127844205-127844372 c
            922-1079            VOSU01000015.1     127843153-127843310 c
            1080-1211           VOSU01000015.1     127841930-127842061 c
            1212-3242           VOSU01000015.1     127831601-127833631 c
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3242
                     /gene="L2HGDH"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 long SRA reads, 5 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746671"
     CDS             16..1407
                     /gene="L2HGDH"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: L-2-hydroxyglutarate
                     dehydrogenase, mitochondrial"
                     /protein_id="XP_032474117.1"
                     /db_xref="GeneID:116746671"
                     /translation="MVPALRYLGSVCGLARGGFPXGFSAACAPAPGKPWLLCQGGRRA
                     STSSFDVVIIGGGIVGLASARALILRHPALSIGVLEKEKDLAIHQTGHNSGVIHSGIY
                     YKPESLKAKLCVQGAALIYEYCNQKGISYKQCGKLIVAVEQEEIPRLKALYERGLQNG
                     VQDLRLIQQEDIKKKEPYCRGLMAIDCPHTGIVDYQQVALSFAQDFQEAGGSVLTNFE
                     VEDIEMAKESPSRSKDGMKYPIVIRNTKGEEVRCQYVVTCAGLHSDRISELSGCSPNP
                     RIVPFRGDYLLLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFK
                     REGYRPFDFSARDIMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSATVKHLQKFIPEI
                     TISDILRGPAGVRAQALDRDGNLVEDFVFDGGVGDIGNRILHVRNAPSPAATSSLAIS
                     GMIADEVQQRFEL"
     misc_feature    196..1386
                     /gene="L2HGDH"
                     /note="FAD dependent oxidoreductase; Region: DAO; cl40741"
                     /db_xref="CDD:477422"
ORIGIN      
        1 gaggaggcgc aggcgatggt gccagcgcta cgttacctag gcagtgtctg cggactggcc
       61 cgcgggggtt tcccgnnggg cttctccgcg gcgtgcgcgc ccgcgccggg gaagccctgg
      121 ctgttgtgcc aaggtggccg cagagccagc accagctcat ttgatgtagt cattattggt
      181 ggcggaattg tggggcttgc ctctgccaga gcactcatcc tgcgacatcc agctctttcc
      241 attggtgttc tggaaaagga gaaagattta gctattcatc agactggaca taacagtggt
      301 gtcatacata gtggaattta ttataaacct gaatctctga aagctaagtt atgtgtacaa
      361 ggcgcagccc tcatctatga gtactgtaac caaaagggaa tttcctacaa gcaatgtggc
      421 aagcttatag tagctgttga acaagaagaa attcccagac ttaaggccct gtatgagaga
      481 ggcctgcaga atggtgtcca ggacctgagg ctgatccagc aagaggacat aaaaaagaag
      541 gagccatatt gtaggggtct aatggctatt gattgtcctc atactggcat tgtggactat
      601 cagcaggtgg ctttgtcatt tgcccaggat ttccaagaag caggtggctc tgttttgacc
      661 aattttgaag tagaagatat tgaaatggct aaagaaagtc cttcaagaag taaagatggg
      721 atgaaatacc caattgttat aaggaataca aagggagagg aggttcgatg tcagtatgtt
      781 gtgacatgtg caggacttca ctcagaccgt atttccgagt tgagtggctg cagtcccaat
      841 ccgcgaattg taccattccg gggagattac ctgctcttga agccagaaaa acgctatctt
      901 gtaaaaggga atatttatcc agtcccagat agccgatttc ctttcctagg agttcacttc
      961 acaccaagga tggacggcag tatttggcta gggccgaatg cagttcttgc ctttaaacga
     1021 gagggttaca gaccctttga cttcagtgcc agagatatta tggatataat tatcaagagt
     1081 ggcttgatta aactggtgtt ccagaatttt tcctatggag ttaatgaaat gtacaaggcc
     1141 tgttttctca gtgcaacagt gaagcatctt caaaagttta tccctgaaat tactatcagt
     1201 gacatactta gaggtccagc tggagtaaga gcccaagccc tggatagaga cggaaatctc
     1261 gtagaagatt ttgtatttga tggaggagtt ggggatattg gaaatcgcat tcttcatgtg
     1321 agaaatgcac cttcccctgc tgccacttct tcccttgcaa tttctggaat gattgcagat
     1381 gaagtacaac agagatttga attgtagata atgaaaggag ctaggtatgc attttaatct
     1441 ccacattcag caacaagaat gtactaacta cattctttaa gtttcattta agaaaaatgg
     1501 tttaaaatgt cattttagat aaccactgaa tattttaaat tatgtaatat ggaaataatg
     1561 attttttaaa gtccatgctc tttaaaaata ataaaaggta cagttgtatc tgtcctgaat
     1621 tcttgacttt gttaatgacc tgtcctcacc aaccatgatc tagagatttg gctttttttg
     1681 gaatttctgg gaactatagc atgaaaaagt gattattccc ctaacttttt ggctttataa
     1741 tatctaagct tttttgtctt tcctagacaa gaaaatatat tgtaggttgc aaacctttta
     1801 attttgaaga gtcatagaaa agctcacatc atttagagca acagtatttg tatttgggaa
     1861 tttaaaattg ttgattcaaa tacatgaaat ttcacatttt gaagtagttt gaataagatt
     1921 ctgtcttatc tacatttgta agaaataact ttgcaaaaga aactcaaagc atttattatt
     1981 cccagtttct ttataattca cttggtctgg tgtcatccct aaatctaaac agcagtccac
     2041 aatgagtatt ttgcttactc ttcagtcttc tgtggttgag aaactaaaag aacttagaat
     2101 cctgacactg agatacagaa ctttgtaatt taaaatagta tttatctctt atatctctgt
     2161 tcttcagtca taccaaggtt ctcagatgtt ggccaagatc actaatgatt catgcctact
     2221 tgacttttcc agaatcctat aaacctttat gaggatgttt cttcattttg gggaaatacc
     2281 taattttgag gcattcactt ttgtacaccg caaaagtgcc ttacaatcgt gtgtatttca
     2341 tgagtatttt aaattgttgc ccagtgccat actgtatact atgtactata tatatacgtg
     2401 tgtgtgtggt atctgttgaa atgattcttg caattcagga tgttggaaaa tagaaatata
     2461 aatgaaaata tggtataata tggggaaact tattgcagaa ccaccattta ggtgagaaat
     2521 tttcatccat tccctcacat gtgctctctc tggattaatc ttccagtctt cattttttct
     2581 ttcctctcgt ctctccaaaa ctgtgtgatg gatgagtcag aaagatgagc attttggttg
     2641 atagcaaaac ttaccagttt tcttcctttt cacttcaagc caatgattac attgattgag
     2701 ctacctcatc agttaatttg aaaggctaca catcatcagc tcatgttaca gaatagcaca
     2761 tctcaggtga atagattaga cagttcttca gcacttggga tgagaatact gaaagcagtt
     2821 ggaaagtatt cacagaggaa acaagcccta atggtccttc atgacaactg attcttccaa
     2881 gaaatgtgat acacagggta ttttctgttt cattgcaaga ctattaagag atggaaaata
     2941 ttacaattct ctatttcatt aacagtaaga ttccatatac actaagctgt gaaagactga
     3001 agttataaaa ataactaccc taattaaagc aacccccatt ccatttggat ctttactata
     3061 ccccaaaaaa tacaagtgaa aaaatgattg aaagcgtttt gaatgtgtag attattctat
     3121 ttgtaaaacg tttttattta tgtcaataga gttttgttgt ggaataatgc tataatattt
     3181 taaagttttg tgtatttcta agagagaaga attgtatatt aatattaaaa atattttaat
     3241 ga
//
LOCUS       XM_032618238            1998 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin dependent kinase like 1 (CDKL1),
            transcript variant X1, mRNA.
ACCESSION   XM_032618238
VERSION     XM_032618238.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1998
                     /gene="CDKL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746679"
     CDS             34..1233
                     /gene="CDKL1"
                     /codon_start=1
                     /product="cyclin-dependent kinase-like 1 isoform X1"
                     /protein_id="XP_032474129.1"
                     /db_xref="GeneID:116746679"
                     /translation="MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLESEDDPVI
                     KKIALREICMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLHELDKHQRGVPEHL
                     VKSITWQTLQAINFCHKHNCIHRDVKPENILVTKHSVIKLCDFGFARLLTGPSDYYTD
                     YVATRWYRSPELLVGDMQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTL
                     GDLIPRHHQVFSTNQYFSGVKIPDPEYMEPLELKFPNISYPALGLLKGCLHMNPAERL
                     TCEQLLGHPYFDSIREIGDLAKEHEKSTGKTLRQSRKHLPRLGHCSFYLFTPQLESAC
                     SGATWRPCRQCIYKFTETSSSPNLHFQYQNDKLKSPKEQCVKVKTLTSRKGEESWKQI
                     FLSQGCK"
     misc_feature    37..894
                     /gene="CDKL1"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     Cyclin-Dependent protein Kinase Like 1 and 4; Region:
                     STKc_CDKL1_4; cd07847"
                     /db_xref="CDD:270837"
     misc_feature    order(61..75,85..87,124..126,130..132,181..183,223..225,
                     271..282,289..291,295..300,409..411,415..417,421..426,
                     430..432,463..465,472..474,508..510,514..525,529..531,
                     643..645)
                     /gene="CDKL1"
                     /note="active site"
                     /db_xref="CDD:270837"
     misc_feature    order(61..75,85..87,124..126,130..132,223..225,271..282,
                     289..291,409..411,415..417,421..426,430..432,463..465)
                     /gene="CDKL1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270837"
     misc_feature    order(181..183,295..297,409..411,415..417,472..474,
                     508..510,514..525,529..531,643..645)
                     /gene="CDKL1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270837"
     misc_feature    order(460..498,502..531)
                     /gene="CDKL1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270837"
ORIGIN      
        1 aagatccgtt taaagaagat ttattcatct gtgatggaga agtatgaaaa aattgggaaa
       61 attggcgaag gatcctatgg agttgttttc aaatgcagaa acagggacac gggtcagatt
      121 gtggccatca agaggtttct ggaatcagaa gatgatcctg tcataaagaa aatcgccctt
      181 cgagaaatct gcatgctcaa gcaactcaag catcccaacc tcgtcaacct tatcgaagtc
      241 ttcaggagga agcggaagct tcacctggtg tttgaatact gtgaccacac ggtgctccac
      301 gagctggaca aacaccaaag aggggtacca gaacatcttg tgaagagcat aacttggcag
      361 acattgcaag ccataaattt ttgccataaa cacaattgca tacacagaga cgtaaagcca
      421 gaaaacatcc tcgtcacaaa acattctgtg attaagcttt gcgactttgg attcgctcgg
      481 cttttgactg gaccgagtga ctactacaca gactatgtgg ccaccaggtg gtaccgctcc
      541 ccagagctgt tggtggggga catgcagtac ggccccccag tagacgtttg ggcaattggc
      601 tgtgtctttg ctgagctgct gtcaggagtg cctctgtggc ccgggaaatc agatgtggat
      661 cagctctatc tgattaggaa aaccttggga gacctcattc ctaggcacca tcaagtattt
      721 agcacaaatc agtacttcag tggggtaaaa attccagacc ctgaatatat ggaaccactt
      781 gaattaaaat ttccaaacat ctcttatcct gccctggggc tcttaaaggg ctgtctccac
      841 atgaatcctg ccgagagact gacatgtgag cagctgttgg ggcatccata ttttgacagc
      901 atcagagaaa taggggattt ggcaaaagag catgagaaat ccacagggaa gaccctaaga
      961 cagagccgaa agcacctgcc gcggcttgga cattgttctt tctacttgtt cactcctcaa
     1021 ttggagtcag cctgcagtgg tgccacctgg cgtccatgca ggcagtgcat ctacaagttt
     1081 actgaaacca gctccagtcc caatctacat ttccagtacc aaaatgacaa actaaaatca
     1141 cctaaggagc aatgtgtcaa ggttaagaca cttacgtcca gaaaaggaga ggagtcgtgg
     1201 aaacagatct tcctatcaca aggctgtaag tagtgtcccc agaacagtgc aaagcaagag
     1261 ctgtacaggg cagctgggaa agactgggca agtaacttca cctctctgac ccttggtttt
     1321 ctcatttgta aaataagatg atttgctcag atgatttcca ggtgtaaaaa cccataacta
     1381 tgagttgaga aggcgatttt ggaattgggt ctcaacctga tttatctcaa ttcaagtttc
     1441 tctgatagtg tgccaggtgg ggagaaaaca aagataaatg gaacatggtc tctgtctttg
     1501 aggagctgac aatttaatgc agggtggagt gagctaaaac aagttaccag gtagttaaaa
     1561 taaatgatag aacctggaaa agacctcaaa agagttaaag acacacaagg atttcaatag
     1621 acaaagatgc caggaaaatg taggtcaggt gataagctga ggcaggaacc tttaaggcat
     1681 gttgtagttc agttggctca gcacatgggg gtcatgagaa gaggagggag acaatgtaca
     1741 cagtcacatc gggaagggtc tcccatgttc agccagaaag tttgtcttct gcaggtggct
     1801 aggaatcatt gagattttag cacagagcac tggcatggtt agaactatgc ttcaggaata
     1861 ttactcagac agcagcatca agattgaggg tcatttagag atgaggaaac ttaagccctg
     1921 ataataagta acttgctgac accctaaatc ctttctggaa caaggtgggg tattaataaa
     1981 cgcatgtgtt taaaggga
//
LOCUS       XM_032618249            2994 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin dependent kinase like 1 (CDKL1),
            transcript variant X2, mRNA.
ACCESSION   XM_032618249
VERSION     XM_032618249.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2994
                     /gene="CDKL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746679"
     CDS             34..1128
                     /gene="CDKL1"
                     /codon_start=1
                     /product="cyclin-dependent kinase-like 1 isoform X2"
                     /protein_id="XP_032474140.1"
                     /db_xref="GeneID:116746679"
                     /translation="MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLESEDDPVI
                     KKIALREICMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLHELDKHQRGVPEHL
                     VKSITWQTLQAINFCHKHNCIHRDVKPENILVTKHSVIKLCDFGFARLLTGPSDYYTD
                     YVATRWYRSPELLVGDMQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTL
                     GDLIPRHHQVFSTNQYFSGVKIPDPEYMEPLELKFPNISYPALGLLKGCLHMNPAERL
                     TCEQLLGHPYFDSIREIGDLAKEHEKSTGKTLRQSRKHLPRVKMGHCFTEASKLQYLP
                     QLTSSSILPALDNKKYYYNTKKLNYHFPNI"
     misc_feature    37..894
                     /gene="CDKL1"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     Cyclin-Dependent protein Kinase Like 1 and 4; Region:
                     STKc_CDKL1_4; cd07847"
                     /db_xref="CDD:270837"
     misc_feature    order(61..75,85..87,124..126,130..132,181..183,223..225,
                     271..282,289..291,295..300,409..411,415..417,421..426,
                     430..432,463..465,472..474,508..510,514..525,529..531,
                     643..645)
                     /gene="CDKL1"
                     /note="active site"
                     /db_xref="CDD:270837"
     misc_feature    order(61..75,85..87,124..126,130..132,223..225,271..282,
                     289..291,409..411,415..417,421..426,430..432,463..465)
                     /gene="CDKL1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270837"
     misc_feature    order(181..183,295..297,409..411,415..417,472..474,
                     508..510,514..525,529..531,643..645)
                     /gene="CDKL1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270837"
     misc_feature    order(460..498,502..531)
                     /gene="CDKL1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270837"
ORIGIN      
        1 aagatccgtt taaagaagat ttattcatct gtgatggaga agtatgaaaa aattgggaaa
       61 attggcgaag gatcctatgg agttgttttc aaatgcagaa acagggacac gggtcagatt
      121 gtggccatca agaggtttct ggaatcagaa gatgatcctg tcataaagaa aatcgccctt
      181 cgagaaatct gcatgctcaa gcaactcaag catcccaacc tcgtcaacct tatcgaagtc
      241 ttcaggagga agcggaagct tcacctggtg tttgaatact gtgaccacac ggtgctccac
      301 gagctggaca aacaccaaag aggggtacca gaacatcttg tgaagagcat aacttggcag
      361 acattgcaag ccataaattt ttgccataaa cacaattgca tacacagaga cgtaaagcca
      421 gaaaacatcc tcgtcacaaa acattctgtg attaagcttt gcgactttgg attcgctcgg
      481 cttttgactg gaccgagtga ctactacaca gactatgtgg ccaccaggtg gtaccgctcc
      541 ccagagctgt tggtggggga catgcagtac ggccccccag tagacgtttg ggcaattggc
      601 tgtgtctttg ctgagctgct gtcaggagtg cctctgtggc ccgggaaatc agatgtggat
      661 cagctctatc tgattaggaa aaccttggga gacctcattc ctaggcacca tcaagtattt
      721 agcacaaatc agtacttcag tggggtaaaa attccagacc ctgaatatat ggaaccactt
      781 gaattaaaat ttccaaacat ctcttatcct gccctggggc tcttaaaggg ctgtctccac
      841 atgaatcctg ccgagagact gacatgtgag cagctgttgg ggcatccata ttttgacagc
      901 atcagagaaa taggggattt ggcaaaagag catgagaaat ccacagggaa gaccctaaga
      961 cagagccgaa agcacctgcc gcgggtaaag atggggcact gctttacaga agcatccaag
     1021 ttgcagtacc tacctcagct gactagcagc agcatcctcc cagctttgga taacaagaag
     1081 tactactata acaccaagaa acttaactac cattttccaa acatttaaag agcttggaga
     1141 tggataacaa aaaaagaatt gatcattaat ttgagtaaaa catatatttg attgaaagca
     1201 atcacaatgt tgaaaaaaac atcaggagaa aatataagta aataactggg ggaggccact
     1261 tggcaagacg tgaagggaaa ttccagaggc agtgttccat gcttgacgat ggtgtccaga
     1321 acagaaagga aaaacttctt tggattttca cttttatttt tgttgtatct aagtagctga
     1381 gcttatggac agaatataaa ctatctactg cactcgccca tacctccagc aaaattagag
     1441 ataaaaaaat ttatgctcca attgcaccat atgcaacaag tgaaaaaatg gattacagaa
     1501 cgcccatata tgtttccttg gatctctgtt gctttgagtc ctatctcctg ccttttcaga
     1561 ttttctcatc gtatttaagg agagttaagg ttcttgaaac caaaatgttt aaaattccat
     1621 ttcctgcttg ctctagctct tgatttttat atattgaagc ttttttgaat atatgagatg
     1681 tttaaaatat ttaaaatcat atggattatc ataaaagact aatttacatg cttgtatatt
     1741 taatgatatg tttatagaca tttcttacat atactttggt ctttaccttt agtaaaggat
     1801 gcatcttagt catttttgca ggcaagatgg atttactata atccatctac acttgttcac
     1861 ccaattcccc ttgcaaacaa tggcatgaag cttggcagct gacccagggg tagaacaaga
     1921 tccacaggct tcacaggaac tgggcctgcc agcctgaaag taattagtac ttcattctct
     1981 ccagctcagc ctcagacttg gagacagaga tactggcagg actatagtga tctgggtttt
     2041 ggaagaaact gcttatgagc ttttacttgg gtcataaaag acataaggtt ataagctgat
     2101 gttttccctg aaatatcttt ttacactgat gtgtatgtgt gtatatctat agtgcacaca
     2161 catatatatg tgtgtatata ttccaaccta acaactaaaa gttaactaat aagaaaatac
     2221 accaaaatga tattgagaat tcctagcttt gtgatactta aaatgataca gtgatactta
     2281 aaatgacgac atgtaactag ctttgatgtg gcctattgct cctattcaaa aagctttttc
     2341 atccttgtcc cctggaaaca agggcaatat gaagctgacg tctgcttctt attgctcaac
     2401 cccgtttttg gttgatgtgc tgctatttcc tagcagtcct cagccatggt ttttgaagat
     2461 gtattttact gtatcttcaa aacctttctt ctgcattctc agtttactgc tgtgttaatt
     2521 ttcttcatga gagcatttga ccttattcac ttactgttaa gtaatccacc aaattctggc
     2581 atctgttcaa taattttggc taccccagcc agtttagcga tatcctgagg cttcctaatg
     2641 tatgtagctt cttgcataga gctgatagcg ggttaaatac tagtcacagt ataatctaat
     2701 tcttgctatg tagacttgat tcaaatgaca aagaaggaca tccagcttct gctaatagtt
     2761 tacattttgt gtttttcctt ttttccttac ccccaacagt gtacctgacg aggcagatga
     2821 ctataactcc ctaatttatc cagtagtttt aaggaataca attcagagta gaaaagtagc
     2881 tccagactaa cctgtggtca atcagttgct tcatcccata gtaatcaaac aaggctgaga
     2941 tagaagtggt catttgtttc taatgagttc tattaaatat atgcttatac ttaa
//
LOCUS       XM_032618260            3470 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin dependent kinase like 1 (CDKL1),
            transcript variant X3, mRNA.
ACCESSION   XM_032618260
VERSION     XM_032618260.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3470
                     /gene="CDKL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746679"
     CDS             546..1604
                     /gene="CDKL1"
                     /codon_start=1
                     /product="cyclin-dependent kinase-like 1 isoform X3"
                     /protein_id="XP_032474151.1"
                     /db_xref="GeneID:116746679"
                     /translation="MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLESEDDPVI
                     KKIALREICMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLHELDKHQRGVPEHL
                     VKSITWQTLQAINFCHKHNCIHRDVKPENILVTKHSVIKLCDFGFARLLTGPSDYYTD
                     YVATRWYRSPELLVGDMQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTL
                     GDLIPRHHQVFSTNQYFSGVKIPDPEYMEPLELKFPNISYPALGLLKGCLHMNPAERL
                     TCEQLLGHPYFDSIREIGDLAKEHEKSTGKTLRQSRKHLPRLQYLPQLTSSSILPALD
                     NKKYYYNTKKLNYHFPNI"
     misc_feature    549..1406
                     /gene="CDKL1"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     Cyclin-Dependent protein Kinase Like 1 and 4; Region:
                     STKc_CDKL1_4; cd07847"
                     /db_xref="CDD:270837"
     misc_feature    order(573..587,597..599,636..638,642..644,693..695,
                     735..737,783..794,801..803,807..812,921..923,927..929,
                     933..938,942..944,975..977,984..986,1020..1022,1026..1037,
                     1041..1043,1155..1157)
                     /gene="CDKL1"
                     /note="active site"
                     /db_xref="CDD:270837"
     misc_feature    order(573..587,597..599,636..638,642..644,735..737,
                     783..794,801..803,921..923,927..929,933..938,942..944,
                     975..977)
                     /gene="CDKL1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270837"
     misc_feature    order(693..695,807..809,921..923,927..929,984..986,
                     1020..1022,1026..1037,1041..1043,1155..1157)
                     /gene="CDKL1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270837"
     misc_feature    order(972..1010,1014..1043)
                     /gene="CDKL1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270837"
ORIGIN      
        1 gctccgggcc cgcctcagga ggcgcggggc gtggggtgcg cgcctcgcag ggctctcccc
       61 tccggcgggg cctcgccgcc gccgcccgcg cggggagccg ggcggtgtct tcttgccgaa
      121 gggaaatgaa acccgatatt agaaccgggg aagcccttac ccttcccagt cctccagcca
      181 gctcatgtgt cttagatcgg atgaatttac cattaaaaag atagattgtc ttacaactca
      241 gttcgtttta ggatgacggg ttacatttta acttgcaggg tatataacag acgattaaac
      301 ttgagttacc aaaggcagct gactccaggc tgtcaccctt gatcaagtgg ccacggctgg
      361 ggggcgaggc ttaaagggaa tgggtcggtt cctaattctg taacgagtgc cgtcttctgt
      421 tctaggtcct tgacaaagac ccatcgctga ttgaagctct agtgcagtgt gttcatgcca
      481 agattttata agcgacattt tcaaactatg tgaagatccg tttaaagaag atttattcat
      541 ctgtgatgga gaagtatgaa aaaattggga aaattggcga aggatcctat ggagttgttt
      601 tcaaatgcag aaacagggac acgggtcaga ttgtggccat caagaggttt ctggaatcag
      661 aagatgatcc tgtcataaag aaaatcgccc ttcgagaaat ctgcatgctc aagcaactca
      721 agcatcccaa cctcgtcaac cttatcgaag tcttcaggag gaagcggaag cttcacctgg
      781 tgtttgaata ctgtgaccac acggtgctcc acgagctgga caaacaccaa agaggggtac
      841 cagaacatct tgtgaagagc ataacttggc agacattgca agccataaat ttttgccata
      901 aacacaattg catacacaga gacgtaaagc cagaaaacat cctcgtcaca aaacattctg
      961 tgattaagct ttgcgacttt ggattcgctc ggcttttgac tggaccgagt gactactaca
     1021 cagactatgt ggccaccagg tggtaccgct ccccagagct gttggtgggg gacatgcagt
     1081 acggcccccc agtagacgtt tgggcaattg gctgtgtctt tgctgagctg ctgtcaggag
     1141 tgcctctgtg gcccgggaaa tcagatgtgg atcagctcta tctgattagg aaaaccttgg
     1201 gagacctcat tcctaggcac catcaagtat ttagcacaaa tcagtacttc agtggggtaa
     1261 aaattccaga ccctgaatat atggaaccac ttgaattaaa atttccaaac atctcttatc
     1321 ctgccctggg gctcttaaag ggctgtctcc acatgaatcc tgccgagaga ctgacatgtg
     1381 agcagctgtt ggggcatcca tattttgaca gcatcagaga aataggggat ttggcaaaag
     1441 agcatgagaa atccacaggg aagaccctaa gacagagccg aaagcacctg ccgcggttgc
     1501 agtacctacc tcagctgact agcagcagca tcctcccagc tttggataac aagaagtact
     1561 actataacac caagaaactt aactaccatt ttccaaacat ttaaagagct tggagatgga
     1621 taacaaaaaa agaattgatc attaatttga gtaaaacata tatttgattg aaagcaatca
     1681 caatgttgaa aaaaacatca ggagaaaata taagtaaata actgggggag gccacttggc
     1741 aagacgtgaa gggaaattcc agaggcagtg ttccatgctt gacgatggtg tccagaacag
     1801 aaaggaaaaa cttctttgga ttttcacttt tatttttgtt gtatctaagt agctgagctt
     1861 atggacagaa tataaactat ctactgcact cgcccatacc tccagcaaaa ttagagataa
     1921 aaaaatttat gctccaattg caccatatgc aacaagtgaa aaaatggatt acagaacgcc
     1981 catatatgtt tccttggatc tctgttgctt tgagtcctat ctcctgcctt ttcagatttt
     2041 ctcatcgtat ttaaggagag ttaaggttct tgaaaccaaa atgtttaaaa ttccatttcc
     2101 tgcttgctct agctcttgat ttttatatat tgaagctttt ttgaatatat gagatgttta
     2161 aaatatttaa aatcatatgg attatcataa aagactaatt tacatgcttg tatatttaat
     2221 gatatgttta tagacatttc ttacatatac tttggtcttt acctttagta aaggatgcat
     2281 cttagtcatt tttgcaggca agatggattt actataatcc atctacactt gttcacccaa
     2341 ttccccttgc aaacaatggc atgaagcttg gcagctgacc caggggtaga acaagatcca
     2401 caggcttcac aggaactggg cctgccagcc tgaaagtaat tagtacttca ttctctccag
     2461 ctcagcctca gacttggaga cagagatact ggcaggacta tagtgatctg ggttttggaa
     2521 gaaactgctt atgagctttt acttgggtca taaaagacat aaggttataa gctgatgttt
     2581 tccctgaaat atctttttac actgatgtgt atgtgtgtat atctatagtg cacacacata
     2641 tatatgtgtg tatatattcc aacctaacaa ctaaaagtta actaataaga aaatacacca
     2701 aaatgatatt gagaattcct agctttgtga tacttaaaat gatacagtga tacttaaaat
     2761 gacgacatgt aactagcttt gatgtggcct attgctccta ttcaaaaagc tttttcatcc
     2821 ttgtcccctg gaaacaaggg caatatgaag ctgacgtctg cttcttattg ctcaaccccg
     2881 tttttggttg atgtgctgct atttcctagc agtcctcagc catggttttt gaagatgtat
     2941 tttactgtat cttcaaaacc tttcttctgc attctcagtt tactgctgtg ttaattttct
     3001 tcatgagagc atttgacctt attcacttac tgttaagtaa tccaccaaat tctggcatct
     3061 gttcaataat tttggctacc ccagccagtt tagcgatatc ctgaggcttc ctaatgtatg
     3121 tagcttcttg catagagctg atagcgggtt aaatactagt cacagtataa tctaattctt
     3181 gctatgtaga cttgattcaa atgacaaaga aggacatcca gcttctgcta atagtttaca
     3241 ttttgtgttt ttcctttttt ccttaccccc aacagtgtac ctgacgaggc agatgactat
     3301 aactccctaa tttatccagt agttttaagg aatacaattc agagtagaaa agtagctcca
     3361 gactaacctg tggtcaatca gttgcttcat cccatagtaa tcaaacaagg ctgagataga
     3421 agtggtcatt tgtttctaat gagttctatt aaatatatgc ttatacttaa
//
LOCUS       XM_032618271            2573 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin dependent kinase like 1 (CDKL1),
            transcript variant X4, mRNA.
ACCESSION   XM_032618271
VERSION     XM_032618271.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2573
                     /gene="CDKL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746679"
     CDS             861..1808
                     /gene="CDKL1"
                     /codon_start=1
                     /product="cyclin-dependent kinase-like 1 isoform X4"
                     /protein_id="XP_032474162.1"
                     /db_xref="GeneID:116746679"
                     /translation="MDEQISILALYIRVPEHLVKSITWQTLQAINFCHKHNCIHRDVK
                     PENILVTKHSVIKLCDFGFARLLTGPSDYYTDYVATRWYRSPELLVGDMQYGPPVDVW
                     AIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHHQVFSTNQYFSGVKIPDPE
                     YMEPLELKFPNISYPALGLLKGCLHMNPAERLTCEQLLGHPYFDSIREIGDLAKEHEK
                     STGKTLRQSRKHLPRLGHCSFYLFTPQLESACSGATWRPCRQCIYKFTETSSSPNLHF
                     QYQNDKLKSPKEQCVKVKTLTSRKGEESWKQIFLSQGCK"
     misc_feature    <900..1469
                     /gene="CDKL1"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
ORIGIN      
        1 gtctccctat tcatacatac atctctactt ttatattttt aaaatggtat tgaattccat
       61 ggtgcaaata taccatggtt tctttattca acccccccat tgataaatat ttagattgtt
      121 tctagttttt ctctaataat aaggctacag taaacataaa tatttctata agataaattt
      181 caaagaacat attatttcta taggagcttg gccagccctt ttgtccccat ctttgttgta
      241 accttgtgta gaagtgaagc ttgaatggat gttgattgtt tgacttcttg taatgtgaca
      301 aatattagag gagcagtggt ggaaaggacc attactgtat tgagaacctg ggaagagatc
      361 catggtcttt ctttgtcatc tctctcgtct ctcttatttc tgaagacgtg tttaaaatgc
      421 agtttaatct gttcactttc acacagcagt tgtttaggtt tctctctgtt cgttttaatt
      481 ttgttatcag gacattaggg tcatagtcca tccgttccaa aacttggaag gagagacaga
      541 agtttgcttt ctgggagtta ttttgtgaaa ccaacacatt atgcatcagg gcagagatat
      601 gcaaagcatc cttaaaggga taggaggctg ccgggctggt tagatgtgac tgattacaca
      661 cattttatct aaggacgaca gcttcctaat ttggagatgg gtgcaactaa actgtctcag
      721 cataaaggca ataaccagtc aaactgtgta ctttctctca ttccaactct ttgctcacca
      781 aacaccattc tcattagaac ttgagtttct ctgtggaatc gcctacaacg agagcataag
      841 ctggcagtca gaatttaaag atggatgaac aaattagcat tctggcttta tatatcaggg
      901 taccagaaca tcttgtgaag agcataactt ggcagacatt gcaagccata aatttttgcc
      961 ataaacacaa ttgcatacac agagacgtaa agccagaaaa catcctcgtc acaaaacatt
     1021 ctgtgattaa gctttgcgac tttggattcg ctcggctttt gactggaccg agtgactact
     1081 acacagacta tgtggccacc aggtggtacc gctccccaga gctgttggtg ggggacatgc
     1141 agtacggccc cccagtagac gtttgggcaa ttggctgtgt ctttgctgag ctgctgtcag
     1201 gagtgcctct gtggcccggg aaatcagatg tggatcagct ctatctgatt aggaaaacct
     1261 tgggagacct cattcctagg caccatcaag tatttagcac aaatcagtac ttcagtgggg
     1321 taaaaattcc agaccctgaa tatatggaac cacttgaatt aaaatttcca aacatctctt
     1381 atcctgccct ggggctctta aagggctgtc tccacatgaa tcctgccgag agactgacat
     1441 gtgagcagct gttggggcat ccatattttg acagcatcag agaaataggg gatttggcaa
     1501 aagagcatga gaaatccaca gggaagaccc taagacagag ccgaaagcac ctgccgcggc
     1561 ttggacattg ttctttctac ttgttcactc ctcaattgga gtcagcctgc agtggtgcca
     1621 cctggcgtcc atgcaggcag tgcatctaca agtttactga aaccagctcc agtcccaatc
     1681 tacatttcca gtaccaaaat gacaaactaa aatcacctaa ggagcaatgt gtcaaggtta
     1741 agacacttac gtccagaaaa ggagaggagt cgtggaaaca gatcttccta tcacaaggct
     1801 gtaagtagtg tccccagaac agtgcaaagc aagagctgta cagggcagct gggaaagact
     1861 gggcaagtaa cttcacctct ctgacccttg gttttctcat ttgtaaaata agatgatttg
     1921 ctcagatgat ttccaggtgt aaaaacccat aactatgagt tgagaaggcg attttggaat
     1981 tgggtctcaa cctgatttat ctcaattcaa gtttctctga tagtgtgcca ggtggggaga
     2041 aaacaaagat aaatggaaca tggtctctgt ctttgaggag ctgacaattt aatgcagggt
     2101 ggagtgagct aaaacaagtt accaggtagt taaaataaat gatagaacct ggaaaagacc
     2161 tcaaaagagt taaagacaca caaggatttc aatagacaaa gatgccagga aaatgtaggt
     2221 caggtgataa gctgaggcag gaacctttaa ggcatgttgt agttcagttg gctcagcaca
     2281 tgggggtcat gagaagagga gggagacaat gtacacagtc acatcgggaa gggtctccca
     2341 tgttcagcca gaaagtttgt cttctgcagg tggctaggaa tcattgagat tttagcacag
     2401 agcactggca tggttagaac tatgcttcag gaatattact cagacagcag catcaagatt
     2461 gagggtcatt tagagatgag gaaacttaag ccctgataat aagtaacttg ctgacaccct
     2521 aaatcctttc tggaacaagg tggggtatta ataaacgcat gtgtttaaag gga
//
LOCUS       XM_032618280            2041 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cyclin dependent kinase like 1 (CDKL1),
            transcript variant X5, mRNA.
ACCESSION   XM_032618280
VERSION     XM_032618280.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2041
                     /gene="CDKL1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746679"
     CDS             329..1276
                     /gene="CDKL1"
                     /codon_start=1
                     /product="cyclin-dependent kinase-like 1 isoform X4"
                     /protein_id="XP_032474171.1"
                     /db_xref="GeneID:116746679"
                     /translation="MDEQISILALYIRVPEHLVKSITWQTLQAINFCHKHNCIHRDVK
                     PENILVTKHSVIKLCDFGFARLLTGPSDYYTDYVATRWYRSPELLVGDMQYGPPVDVW
                     AIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHHQVFSTNQYFSGVKIPDPE
                     YMEPLELKFPNISYPALGLLKGCLHMNPAERLTCEQLLGHPYFDSIREIGDLAKEHEK
                     STGKTLRQSRKHLPRLGHCSFYLFTPQLESACSGATWRPCRQCIYKFTETSSSPNLHF
                     QYQNDKLKSPKEQCVKVKTLTSRKGEESWKQIFLSQGCK"
     misc_feature    <368..937
                     /gene="CDKL1"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
ORIGIN      
        1 cagggaagcc ctcgttgctc ttttgacccc ttcctcaata ctctgctgag gcagttccag
       61 catctccatc ttacctattg aaaggccaag tttcaaatac cagcagcata ttaaagattg
      121 tctccaggtg tcattgtcag gagcaactca agcatcccaa cctcgtcaac cttatcgaag
      181 tcttcaggag gaagcggaag cttcacctgg tgtttgaata ctgtgaccac acggtgctcc
      241 acgagctgga caaacaccaa agaggaactt gagtttctct gtggaatcgc ctacaacgag
      301 agcataagct ggcagtcaga atttaaagat ggatgaacaa attagcattc tggctttata
      361 tatcagggta ccagaacatc ttgtgaagag cataacttgg cagacattgc aagccataaa
      421 tttttgccat aaacacaatt gcatacacag agacgtaaag ccagaaaaca tcctcgtcac
      481 aaaacattct gtgattaagc tttgcgactt tggattcgct cggcttttga ctggaccgag
      541 tgactactac acagactatg tggccaccag gtggtaccgc tccccagagc tgttggtggg
      601 ggacatgcag tacggccccc cagtagacgt ttgggcaatt ggctgtgtct ttgctgagct
      661 gctgtcagga gtgcctctgt ggcccgggaa atcagatgtg gatcagctct atctgattag
      721 gaaaaccttg ggagacctca ttcctaggca ccatcaagta tttagcacaa atcagtactt
      781 cagtggggta aaaattccag accctgaata tatggaacca cttgaattaa aatttccaaa
      841 catctcttat cctgccctgg ggctcttaaa gggctgtctc cacatgaatc ctgccgagag
      901 actgacatgt gagcagctgt tggggcatcc atattttgac agcatcagag aaatagggga
      961 tttggcaaaa gagcatgaga aatccacagg gaagacccta agacagagcc gaaagcacct
     1021 gccgcggctt ggacattgtt ctttctactt gttcactcct caattggagt cagcctgcag
     1081 tggtgccacc tggcgtccat gcaggcagtg catctacaag tttactgaaa ccagctccag
     1141 tcccaatcta catttccagt accaaaatga caaactaaaa tcacctaagg agcaatgtgt
     1201 caaggttaag acacttacgt ccagaaaagg agaggagtcg tggaaacaga tcttcctatc
     1261 acaaggctgt aagtagtgtc cccagaacag tgcaaagcaa gagctgtaca gggcagctgg
     1321 gaaagactgg gcaagtaact tcacctctct gacccttggt tttctcattt gtaaaataag
     1381 atgatttgct cagatgattt ccaggtgtaa aaacccataa ctatgagttg agaaggcgat
     1441 tttggaattg ggtctcaacc tgatttatct caattcaagt ttctctgata gtgtgccagg
     1501 tggggagaaa acaaagataa atggaacatg gtctctgtct ttgaggagct gacaatttaa
     1561 tgcagggtgg agtgagctaa aacaagttac caggtagtta aaataaatga tagaacctgg
     1621 aaaagacctc aaaagagtta aagacacaca aggatttcaa tagacaaaga tgccaggaaa
     1681 atgtaggtca ggtgataagc tgaggcagga acctttaagg catgttgtag ttcagttggc
     1741 tcagcacatg ggggtcatga gaagaggagg gagacaatgt acacagtcac atcgggaagg
     1801 gtctcccatg ttcagccaga aagtttgtct tctgcaggtg gctaggaatc attgagattt
     1861 tagcacagag cactggcatg gttagaacta tgcttcagga atattactca gacagcagca
     1921 tcaagattga gggtcattta gagatgagga aacttaagcc ctgataataa gtaacttgct
     1981 gacaccctaa atcctttctg gaacaaggtg gggtattaat aaacgcatgt gtttaaaggg
     2041 a
//
LOCUS       XR_004347849            1515 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus distal membrane arm assembly complex 2
            like (DMAC2L), transcript variant X1, misc_RNA.
ACCESSION   XR_004347849
VERSION     XR_004347849.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1515
                     /gene="DMAC2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746686"
     misc_RNA        1..1515
                     /gene="DMAC2L"
                     /product="distal membrane arm assembly complex 2 like,
                     transcript variant X1"
                     /db_xref="GeneID:116746686"
ORIGIN      
        1 ggcgctctct agccccgccc ccaggcagag gccaatgagg ggcgctcttt cgccccacgt
       61 tgagagcagc cgccagtggc caatggacct cgcgcggcgg agggcgtagg ggcaagccgg
      121 cgccgccgtt agacgctggg gacgctagct cgctccctcc ttttgacact atcaaatgat
      181 gctgtttgga aaaatttccc agcagttctg tggcttaaag aaactcccaa ggtcacgtga
      241 ctcccgatac ttctggggct ggttgaatgc agtgtttaat aaagtggatc atgaacgcat
      301 ccgggatgtt ggccctgaca gggcagcgtc cgagtggctg ctgcgctgtg gggctgtggt
      361 gcgctaccac ggccaggaga ggtggcagaa ggactacaac cacctcccaa caggccctct
      421 ggacaaatac aagattcagg caattgatgc cactgattct tgtatcatga gcattggatt
      481 tgatcacatg gaaggcctac agcatgttga aaaaataagg ctatgcaagt gtcactatat
      541 tgaggatgac tgtttggaga gacttagtca acttggaaat ttacaaaaaa gcatgttgga
      601 aatggaaata atttcatgtg ggaatgtcac agacaaaggt atcattgctt tgcatcattt
      661 aagaaacctc aagtatttgt ttttaagtga tcttcctggc ataaaagaaa aagaaaaaat
      721 tgtccaagcc tttaaaacat cactgccttc tctggaacta aaattagact tgaagtaaaa
      781 tagtaatatt caggataaag gtgctggagc tgcaagccac aactgccacc tcaagtatag
      841 attcagactc tctgcaccag gtggaaggaa atcccctgca gcacaacctc tgggaaacca
      901 taggaagcct tttacactga tgaaacctgg gttgtttcgg aggcttcccc ggtttaaaag
      961 cgaacaggaa atcgctaaag gatatttagc gtgaaactgg gaacgtccag gtcacaaggg
     1021 agccggctgg gtcacctccc atatgccagg tgtcattcct gcttctgcgg ccccgcaggc
     1081 tcccagctgc cccacttttc ctattcctag cactgcagga gcaggggtgg cggggaagtg
     1141 ggaggtggga gacttcactg caggacaggc caagaggttg ggagaacata cagctccagt
     1201 ggaactggat ggaccttcca tctggaaact gagtaatgga gaagggtaag tttcagtttg
     1261 aaagtacctt ccttaggcag taggaattca ggatctcaca gaccttaact gtgctcagaa
     1321 atgtttttga gtataataca ggctcatcag aagacttttg aaaatattaa aaaaccataa
     1381 agaaagaaac aaatcatccc accacaaaga gacattcact gttaatattt tggtatatat
     1441 ctttgcagcc atttatttca ctaacgtaaa aatctttgcc tgattttcca gaggttgtca
     1501 tattctttta tattt
//
LOCUS       XM_032618291            1440 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus distal membrane arm assembly complex 2
            like (DMAC2L), transcript variant X2, mRNA.
ACCESSION   XM_032618291
VERSION     XM_032618291.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1440
                     /gene="DMAC2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746686"
     CDS             176..778
                     /gene="DMAC2L"
                     /codon_start=1
                     /product="ATP synthase subunit s, mitochondrial isoform
                     X1"
                     /protein_id="XP_032474182.1"
                     /db_xref="GeneID:116746686"
                     /translation="MMLFGKISQQFCGLKKLPRSRDSRYFWGWLNAVFNKVDHERIRD
                     VGPDRAASEWLLRCGAVVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGF
                     DHMEGLQHVEKIRLCKCHYIEDDCLERLSQLGNLQKSMLEMEIISCGNVTDKGIIALH
                     HLRNLKYLFLSDLPGIKEKEKIVQAFKTSLPSLELKLDLK"
     misc_feature    506..592
                     /gene="DMAC2L"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    593..667
                     /gene="DMAC2L"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
ORIGIN      
        1 ggcgctctct agccccgccc ccaggcagag gccaatgagg ggcgctcttt cgccccacgt
       61 tgagagcagc cgccagtggc caatggacct cgcgcggcgg agggcgtagg ggcaagccgg
      121 cgccgccgtt agacgctggg gacgctagct cgctccctcc ttttgacact atcaaatgat
      181 gctgtttgga aaaatttccc agcagttctg tggcttaaag aaactcccaa ggtcacgtga
      241 ctcccgatac ttctggggct ggttgaatgc agtgtttaat aaagtggatc atgaacgcat
      301 ccgggatgtt ggccctgaca gggcagcgtc cgagtggctg ctgcgctgtg gggctgtggt
      361 gcgctaccac ggccaggaga ggtggcagaa ggactacaac cacctcccaa caggccctct
      421 ggacaaatac aagattcagg caattgatgc cactgattct tgtatcatga gcattggatt
      481 tgatcacatg gaaggcctac agcatgttga aaaaataagg ctatgcaagt gtcactatat
      541 tgaggatgac tgtttggaga gacttagtca acttggaaat ttacaaaaaa gcatgttgga
      601 aatggaaata atttcatgtg ggaatgtcac agacaaaggt atcattgctt tgcatcattt
      661 aagaaacctc aagtatttgt ttttaagtga tcttcctggc ataaaagaaa aagaaaaaat
      721 tgtccaagcc tttaaaacat cactgccttc tctggaacta aaattagact tgaagtaaaa
      781 tagtaatatt cagaaatccc ctgcagcaca acctctggga aaccatagga agccttttac
      841 actgatgaaa cctgggttgt ttcggaggct tccccggttt aaaagcgaac aggaaatcgc
      901 taaaggatat ttagcgtgaa actgggaacg tccaggtcac aagggagccg gctgggtcac
      961 ctcccatatg ccaggtgtca ttcctgcttc tgcggccccg caggctccca gctgccccac
     1021 ttttcctatt cctagcactg caggagcagg ggtggcgggg aagtgggagg tgggagactt
     1081 cactgcagga caggccaaga ggttgggaga acatacagct ccagtggaac tggatggacc
     1141 ttccatctgg aaactgagta atggagaagg gtaagtttca gtttgaaagt accttcctta
     1201 ggcagtagga attcaggatc tcacagacct taactgtgct cagaaatgtt tttgagtata
     1261 atacaggctc atcagaagac ttttgaaaat attaaaaaac cataaagaaa gaaacaaatc
     1321 atcccaccac aaagagacat tcactgttaa tattttggta tatatctttg cagccattta
     1381 tttcactaac gtaaaaatct ttgcctgatt ttccagaggt tgtcatattc ttttatattt
//
LOCUS       XM_032618295            3815 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus distal membrane arm assembly complex 2
            like (DMAC2L), transcript variant X3, mRNA.
ACCESSION   XM_032618295
VERSION     XM_032618295.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3815
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3815
                     /gene="DMAC2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 15 long SRA reads, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746686"
     CDS             95..697
                     /gene="DMAC2L"
                     /codon_start=1
                     /product="ATP synthase subunit s, mitochondrial isoform
                     X1"
                     /protein_id="XP_032474186.1"
                     /db_xref="GeneID:116746686"
                     /translation="MMLFGKISQQFCGLKKLPRSRDSRYFWGWLNAVFNKVDHERIRD
                     VGPDRAASEWLLRCGAVVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGF
                     DHMEGLQHVEKIRLCKCHYIEDDCLERLSQLGNLQKSMLEMEIISCGNVTDKGIIALH
                     HLRNLKYLFLSDLPGIKEKEKIVQAFKTSLPSLELKLDLK"
     misc_feature    425..511
                     /gene="DMAC2L"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    512..586
                     /gene="DMAC2L"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
ORIGIN      
        1 aatggacctc gcgcggcgga gggcgtaggg gcaagccggc gccgccgtta gacgctgggg
       61 acgctagctc gctccctcct tttgacacta tcaaatgatg ctgtttggaa aaatttccca
      121 gcagttctgt ggcttaaaga aactcccaag gtcacgtgac tcccgatact tctggggctg
      181 gttgaatgca gtgtttaata aagtggatca tgaacgcatc cgggatgttg gccctgacag
      241 ggcagcgtcc gagtggctgc tgcgctgtgg ggctgtggtg cgctaccacg gccaggagag
      301 gtggcagaag gactacaacc acctcccaac aggccctctg gacaaataca agattcaggc
      361 aattgatgcc actgattctt gtatcatgag cattggattt gatcacatgg aaggcctaca
      421 gcatgttgaa aaaataaggc tatgcaagtg tcactatatt gaggatgact gtttggagag
      481 acttagtcaa cttggaaatt tacaaaaaag catgttggaa atggaaataa tttcatgtgg
      541 gaatgtcaca gacaaaggta tcattgcttt gcatcattta agaaacctca agtatttgtt
      601 tttaagtgat cttcctggca taaaagaaaa agaaaaaatt gtccaagcct ttaaaacatc
      661 actgccttct ctggaactaa aattagactt gaagtaaaat agtaatattc agtaagtgtc
      721 ttatttcaat ataaagtatc atgtgcaatt gttgatccta aacagcaaca aatattacat
      781 aaacatcaac agaactataa gaatgttata ccacaacatt ctagcagagt ccatcatgta
      841 gaaaataaac attcagatgt gattcactaa agttactaag ttagaagtga gaatttaggt
      901 acattaaatc attttaagaa aaatgcaaac caggtaccat tttaattctt atatattcct
      961 tattttatat caatcctata taaatatctc ttgatgtaga tacttaagag ttctttaaaa
     1021 tgatttaaat gtacaacaca gatattcttt atttttaaca gtaatttgtt acattttact
     1081 ttaaagtttt tgaagcatgt tactataaat atacaattat gaaaaactga aagctaaatt
     1141 tcagattcac tcatggagtc aattatgcaa agtagtcaga ggttgctggg gcattcatat
     1201 tgtttcccag gattcgcatg catttgtcat gatcctgcat tcctttgctc tttataccat
     1261 acatcctttc tctgaatgaa cagtttctgg ctaatttgtc tattttgtag gtttagtcta
     1321 gtgtcttatt aaaactagac ataaatacct ggctggattt aaatagcttt gctgattgca
     1381 atagaacaga ggaaacaatg atgaaggcca gcaaagctat acttactttc tgcttaaatt
     1441 aaaaaactgc ttcaaacaga aaaatttaac atgccagtta gaaactaatt tgtattccct
     1501 catatatgtt ggatagtact tcccatgagc tcaagggaca tcataagaag tataagcact
     1561 aaattcactt tacatctaga aagcagtgat aaagaatatc ataaataggt ataaacagat
     1621 ctttattttt atctgcttca aatggtcctg attctattat tgttggttat atgccaactt
     1681 gtttgtggat ttctgtatgt ttggtttcaa tattaatctg ttgaatataa ccttgactgc
     1741 agttaatttt aaaataaaca ctttctgtga tgaagcatta aagtagaaaa atgaatttta
     1801 gttgtgttag gaaccagctt atgtagatag cacataccat aaatgatgta ctgtttacta
     1861 acataatcgc cactgtcatt ttgaaaatca gaaaatagta aataaaaaaa tgataaggat
     1921 gtagaacagt cttatgtgaa acagtggtga ttccatgctg aagaaaagat cacagatatg
     1981 gttaaattaa gtataagcat atatttaata gaactcatta gaaacaaatg accacttcta
     2041 tctcagcctt gtttgattac tatgggatga agcaactgat tgaccacagg ttagtctgga
     2101 gctacttttc tactctgaat tgtattcctt aaaactactg gataaattag ggagttatag
     2161 tcatctgcct cgtcaggtac actgttgggg gtaaggaaaa aaggaaaaac acaaaatgta
     2221 aactattagc agaagctgga tgtccttctt tgtcatttga atcaagtcta catagcaaga
     2281 attagattat actgtgacta gtatttaacc cgctatcagc tctatgcaag aagctacata
     2341 cattaggaag cctcaggata tcgctaaact ggctggggta gccaaaatta ttgaacagat
     2401 gccagaattt ggtggattac ttaacagtaa gtgaataagg tcaaatgctc tcatgaagaa
     2461 aattaacaca gcagtaaact gagaatgcag aagaaaggtt ttgaagatac agtaaaatac
     2521 atcttcaaaa accatggctg aggactgcta ggaaatagca gcacatcaac caaaaacggg
     2581 gttgagcaat aagaagcaga cgtcagcttc atattgccct tgtttccagg ggacaaggat
     2641 gaaaaagctt tttgaatagg agcaataggc cacatcaaag ctagttacat gtcgtcattt
     2701 taagtatcac tgtatcattt taagtatcac aaagctagga attctcaata tcattttggt
     2761 gtattttctt attagttaac ttttagttgt taggttggaa tatatacaca catatatatg
     2821 tgtgtgcact atagatatac acacatacac atcagtgtaa aaagatattt cagggaaaac
     2881 atcagcttat aaccttatgt cttttatgac ccaagtaaaa gctcataagc agtttcttcc
     2941 aaaacccaga tcactatagt cctgccagta tctctgtctc caagtctgag gctgagctgg
     3001 agagaatgaa gtactaatta ctttcaggct ggcaggccca gttcctgtga agcctgtgga
     3061 tcttgttcta cccctgggtc agctgccaag cttcatgcca ttgtttgcaa ggggaattgg
     3121 gtgaacaagt gtagatggat tatagtaaat ccatcttgcc tgcaaaaatg actaagatgc
     3181 atcctttact aaaggtaaag accaaagtat atgtaagaaa tgtctataaa catatcatta
     3241 aatatacaag catgtaaatt agtcttttat gataatccat atgattttaa atattttaaa
     3301 catctcatat attcaaaaaa gcttcaatat ataaaaatca agagctagag caagcaggaa
     3361 atggaatttt aaacattttg gtttcaagaa ccttaactct ccttaaatac gatgagaaaa
     3421 tctgaaaagg caggagatag gactcaaagc aacagagatc caaggaaaca tatatgggcg
     3481 ttctgtaatc cattttttca cttgttgcat atggtgcaat tggagcataa atttttttat
     3541 ctctaatttt gctggaggta tgggcgagtg cagtagatag tttatattct gtccataagc
     3601 tcagctactt agatacaaca aaaataaaag tgaaaatcca aagaagtttt tcctttctgt
     3661 tctggacacc atcgtcaagc atggaacact gcctctggaa tttcccttca cgtcttgcca
     3721 agtggcctcc cccagttatt tacttatatt ttctcctgat gtttttttca acattgtgat
     3781 tgctttcaat caaatatatg ttttactcaa attaa
//
LOCUS       XM_032618298            3821 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus distal membrane arm assembly complex 2
            like (DMAC2L), transcript variant X4, mRNA.
ACCESSION   XM_032618298
VERSION     XM_032618298.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3821
                     /gene="DMAC2L"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746686"
     CDS             104..703
                     /gene="DMAC2L"
                     /codon_start=1
                     /product="ATP synthase subunit s, mitochondrial isoform
                     X2"
                     /protein_id="XP_032474189.1"
                     /db_xref="GeneID:116746686"
                     /translation="MMLFGKISQQFCGLKKLPRSRDSRYFWGWLNAVFNKVDHERIRD
                     VGPDRAASEWLLRCGAVVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGF
                     DHMGLQHVEKIRLCKCHYIEDDCLERLSQLGNLQKSMLEMEIISCGNVTDKGIIALHH
                     LRNLKYLFLSDLPGIKEKEKIVQAFKTSLPSLELKLDLK"
     misc_feature    431..517
                     /gene="DMAC2L"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    518..592
                     /gene="DMAC2L"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
ORIGIN      
        1 ccagtggcca atggacctcg cgcggcggag ggcgtagggg caagccggcg ccgccgttag
       61 acgctgggga cgctagctcg ctccctcctt ttgacactat caaatgatgc tgtttggaaa
      121 aatttcccag cagttctgtg gcttaaagaa actcccaagg tcacgtgact cccgatactt
      181 ctggggctgg ttgaatgcag tgtttaataa agtggatcat gaacgcatcc gggatgttgg
      241 ccctgacagg gcagcgtccg agtggctgct gcgctgtggg gctgtggtgc gctaccacgg
      301 ccaggagagg tggcagaagg actacaacca cctcccaaca ggccctctgg acaaatacaa
      361 gattcaggca attgatgcca ctgattcttg tatcatgagc attggatttg atcacatggg
      421 cctacagcat gttgaaaaaa taaggctatg caagtgtcac tatattgagg atgactgttt
      481 ggagagactt agtcaacttg gaaatttaca aaaaagcatg ttggaaatgg aaataatttc
      541 atgtgggaat gtcacagaca aaggtatcat tgctttgcat catttaagaa acctcaagta
      601 tttgttttta agtgatcttc ctggcataaa agaaaaagaa aaaattgtcc aagcctttaa
      661 aacatcactg ccttctctgg aactaaaatt agacttgaag taaaatagta atattcagta
      721 agtgtcttat ttcaatataa agtatcatgt gcaattgttg atcctaaaca gcaacaaata
      781 ttacataaac atcaacagaa ctataagaat gttataccac aacattctag cagagtccat
      841 catgtagaaa ataaacattc agatgtgatt cactaaagtt actaagttag aagtgagaat
      901 ttaggtacat taaatcattt taagaaaaat gcaaaccagg taccatttta attcttatat
      961 attccttatt ttatatcaat cctatataaa tatctcttga tgtagatact taagagttct
     1021 ttaaaatgat ttaaatgtac aacacagata ttctttattt ttaacagtaa tttgttacat
     1081 tttactttaa agtttttgaa gcatgttact ataaatatac aattatgaaa aactgaaagc
     1141 taaatttcag attcactcat ggagtcaatt atgcaaagta gtcagaggtt gctggggcat
     1201 tcatattgtt tcccaggatt cgcatgcatt tgtcatgatc ctgcattcct ttgctcttta
     1261 taccatacat cctttctctg aatgaacagt ttctggctaa tttgtctatt ttgtaggttt
     1321 agtctagtgt cttattaaaa ctagacataa atacctggct ggatttaaat agctttgctg
     1381 attgcaatag aacagaggaa acaatgatga aggccagcaa agctatactt actttctgct
     1441 taaattaaaa aactgcttca aacagaaaaa tttaacatgc cagttagaaa ctaatttgta
     1501 ttccctcata tatgttggat agtacttccc atgagctcaa gggacatcat aagaagtata
     1561 agcactaaat tcactttaca tctagaaagc agtgataaag aatatcataa ataggtataa
     1621 acagatcttt atttttatct gcttcaaatg gtcctgattc tattattgtt ggttatatgc
     1681 caacttgttt gtggatttct gtatgtttgg tttcaatatt aatctgttga atataacctt
     1741 gactgcagtt aattttaaaa taaacacttt ctgtgatgaa gcattaaagt agaaaaatga
     1801 attttagttg tgttaggaac cagcttatgt agatagcaca taccataaat gatgtactgt
     1861 ttactaacat aatcgccact gtcattttga aaatcagaaa atagtaaata aaaaaatgat
     1921 aaggatgtag aacagtctta tgtgaaacag tggtgattcc atgctgaaga aaagatcaca
     1981 gatatggtta aattaagtat aagcatatat ttaatagaac tcattagaaa caaatgacca
     2041 cttctatctc agccttgttt gattactatg ggatgaagca actgattgac cacaggttag
     2101 tctggagcta cttttctact ctgaattgta ttccttaaaa ctactggata aattagggag
     2161 ttatagtcat ctgcctcgtc aggtacactg ttgggggtaa ggaaaaaagg aaaaacacaa
     2221 aatgtaaact attagcagaa gctggatgtc cttctttgtc atttgaatca agtctacata
     2281 gcaagaatta gattatactg tgactagtat ttaacccgct atcagctcta tgcaagaagc
     2341 tacatacatt aggaagcctc aggatatcgc taaactggct ggggtagcca aaattattga
     2401 acagatgcca gaatttggtg gattacttaa cagtaagtga ataaggtcaa atgctctcat
     2461 gaagaaaatt aacacagcag taaactgaga atgcagaaga aaggttttga agatacagta
     2521 aaatacatct tcaaaaacca tggctgagga ctgctaggaa atagcagcac atcaaccaaa
     2581 aacggggttg agcaataaga agcagacgtc agcttcatat tgcccttgtt tccaggggac
     2641 aaggatgaaa aagctttttg aataggagca ataggccaca tcaaagctag ttacatgtcg
     2701 tcattttaag tatcactgta tcattttaag tatcacaaag ctaggaattc tcaatatcat
     2761 tttggtgtat tttcttatta gttaactttt agttgttagg ttggaatata tacacacata
     2821 tatatgtgtg tgcactatag atatacacac atacacatca gtgtaaaaag atatttcagg
     2881 gaaaacatca gcttataacc ttatgtcttt tatgacccaa gtaaaagctc ataagcagtt
     2941 tcttccaaaa cccagatcac tatagtcctg ccagtatctc tgtctccaag tctgaggctg
     3001 agctggagag aatgaagtac taattacttt caggctggca ggcccagttc ctgtgaagcc
     3061 tgtggatctt gttctacccc tgggtcagct gccaagcttc atgccattgt ttgcaagggg
     3121 aattgggtga acaagtgtag atggattata gtaaatccat cttgcctgca aaaatgacta
     3181 agatgcatcc tttactaaag gtaaagacca aagtatatgt aagaaatgtc tataaacata
     3241 tcattaaata tacaagcatg taaattagtc ttttatgata atccatatga ttttaaatat
     3301 tttaaacatc tcatatattc aaaaaagctt caatatataa aaatcaagag ctagagcaag
     3361 caggaaatgg aattttaaac attttggttt caagaacctt aactctcctt aaatacgatg
     3421 agaaaatctg aaaaggcagg agataggact caaagcaaca gagatccaag gaaacatata
     3481 tgggcgttct gtaatccatt ttttcacttg ttgcatatgg tgcaattgga gcataaattt
     3541 ttttatctct aattttgctg gaggtatggg cgagtgcagt agatagttta tattctgtcc
     3601 ataagctcag ctacttagat acaacaaaaa taaaagtgaa aatccaaaga agtttttcct
     3661 ttctgttctg gacaccatcg tcaagcatgg aacactgcct ctggaatttc ccttcacgtc
     3721 ttgccaagtg gcctccccca gttatttact tatattttct cctgatgttt ttttcaacat
     3781 tgtgattgct ttcaatcaaa tatatgtttt actcaaatta a
//
LOCUS       XM_032618326            2337 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 266 (TMEM266),
            mRNA.
ACCESSION   XM_032618326
VERSION     XM_032618326.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2337
                     /gene="TMEM266"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746714"
     CDS             158..1780
                     /gene="TMEM266"
                     /codon_start=1
                     /product="transmembrane protein 266"
                     /protein_id="XP_032474217.1"
                     /db_xref="GeneID:116746714"
                     /translation="MALVASFNMTSPQPATEGGTSEVEIISQQVDEETKSIAPMQLVN
                     FAYRDLPLAAVDLSTVGSQLLSNLDEDYQREGSTWLKPCCGKRAAVWQVFLLSASVNS
                     FLVACVILVVILLTLELLIDIKLLQFSSAFQFAGVIHWISLVILSVFFSETVLRIVVL
                     GIWDYIENKIEVFDGAVIILSLAPMVASTVANGPRSPWDAISLIIVLRIWRVKRVIDA
                     YVLPVKVEMEMVIQQYEKAKAIQDEQLERLTQICQEQGFEIRQLRAHLAQQDLDLAAE
                     REAALQAPHVLSQPRSRYKVVEAGTWAEETADESVVEELQPVQEAAVKDDMNSYISQY
                     YNGPSSDSGAPEPAVCVVTTAAIDIHQPISSDLFSVDVPLKLGSDGTCASATSESASR
                     STHGSVTQAQSDSSQTLGSSMDCSTAREEPSSEPSPSPLPLPPLPPPPQQETAEATVQ
                     DLLSSLSEDPCPSRRALDPASLARPSTAGLAQTSPELEHRVSLFNQKNQEGFTVFQIK
                     PVIHFQPAAPVLEEKFRSLESKEQKLHRVPEA"
     misc_feature    458..>811
                     /gene="TMEM266"
                     /note="Ion transport protein; Region: Ion_trans;
                     pfam00520"
                     /db_xref="CDD:459842"
ORIGIN      
        1 cgggagcgcg agccgcggtc ggcgccgctg cagagccgag cgtatccaca gcccgggcag
       61 cagggcacca catttgtatg ccttatagaa cccacacttg gacatgctga catcaggctt
      121 caagacagct gagccccact agacacccaa aaaacccatg gctctggttg catctttcaa
      181 catgaccagt ccgcagcctg ccacagaagg aggaacttcc gaagttgaga tcatctccca
      241 acaagtagac gaagaaacca agagcattgc tcccatgcag ctggtgaact ttgcctatcg
      301 ggacttgccc ctggctgcgg ttgacctctc cacggtgggc tcgcagctcc tgtcaaatct
      361 ggatgaagat taccaaagag aagggtctac ctggctgaag ccgtgctgtg ggaagagagc
      421 agccgtgtgg caggtatttt tgctcagtgc aagtgtcaac agtttcctgg tagcctgtgt
      481 aatattggtg gtgattctcc tgactctgga acttctaata gatataaagc ttctccagtt
      541 ttccagtgca ttccagtttg ctggcgtgat acactggatc agtctggtca ttctctcagt
      601 gttcttctca gagactgttc ttcggatagt ggtgctcggg atctgggatt acattgaaaa
      661 caaaatagag gtgtttgatg gggctgtgat catcctgtcc ttggccccga tggtggcgtc
      721 cactgtggct aatgggccca ggagcccctg ggatgccatc agcctcatca ttgtgctccg
      781 gatctggcgg gtgaagaggg tcattgacgc ctacgtcctg cctgtgaagg tggagatgga
      841 gatggtcatc cagcagtacg agaaggccaa ggccatccag gatgagcagc tggagagact
      901 gacgcagatc tgtcaggagc aagggtttga gatccggcag ctgcgggcgc acctggcgca
      961 gcaggactta gacctggcgg ccgagcgcga ggcggcgctg caggcccctc acgtgctcag
     1021 ccagccgcgc agccgctaca aggtggtgga ggccggtacg tgggccgagg agaccgcgga
     1081 tgagagcgtc gtggaggagc tgcagcccgt gcaagaagct gcagtgaaag atgacatgaa
     1141 cagctacatc agccagtact acaatgggcc cagcagtgac agcggtgccc cagagccagc
     1201 tgtgtgcgtg gtcaccacgg cggccataga catccaccag cccatctcct ctgacctctt
     1261 ttctgtcgat gtgcccctga agcttggcag cgatggtacc tgcgccagcg ccacctctga
     1321 gagcgcctcc cgctccactc acggctccgt cacccaggca cagagtgaca gcagccagac
     1381 gctgggctcc tccatggact gcagcaccgc ccgcgaggag ccgtcctctg agcctagccc
     1441 ctcccccctg ccactgccgc cactgccgcc accacctcag caggagacgg cagaggccac
     1501 agtccaggac ctgttgtcct ccctgtcaga ggacccctgc ccatcccgga gggccttgga
     1561 cccagcctcc cttgcccggc ccagcacagc gggcttggcc caaaccagcc ccgagctgga
     1621 gcacagggta agtctgttca accagaagaa ccaggagggc ttcactgtct ttcagatcaa
     1681 gcctgtcatc cacttccagc ctgctgcacc tgtgctggag gagaagttca gatctttgga
     1741 atccaaagag caaaagttgc acagggtccc tgaagcctag agcctccggg caggctggga
     1801 gggagcgggg cagccagcca tctcacgctc tcccagggcc ctggaggcta ccggggccac
     1861 acaaggggcc caggagccct cctggcctcc ctcagggtgc tgcctgcctc cagggaggtg
     1921 acgccaggcc aggaggccac acgcctcaga cctcaaagcc cagagctggc gcctcctctc
     1981 accctgctca ggggagggtg gtgctcgtgg ctggggtttt tttaaaccac ttttacaaaa
     2041 accagcctgt ggcccagctt cagcagggca gagtgcgggg gccagctcag cctcttccgt
     2101 tgcctttgtt cctgatgccc accccggacc cccgggaaca gcactgtgag caggggctat
     2161 ccagccccaa ccccaagccg tcttttccag gaatcctggg tggagccaac acaatcacac
     2221 acagaccacc atctgagcct atttcatttg tcctcattct ctcatttagg catgagcatt
     2281 tctgagtctt ttcaagacaa atctagtttt caccttcaca ggacataaag ggatgga
//
LOCUS       XM_032618339            1463 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 30B (TMEM30B),
            mRNA.
ACCESSION   XM_032618339
VERSION     XM_032618339.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1463
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1463
                     /gene="TMEM30B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746717"
     CDS             283..1344
                     /gene="TMEM30B"
                     /codon_start=1
                     /product="cell cycle control protein 50B"
                     /protein_id="XP_032474230.1"
                     /db_xref="GeneID:116746717"
                     /translation="MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASITLPLFFCAGL
                     AFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRAPPPRCSCAWYFSLPE
                     FFQGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLQSALRHPVNECYPYQYSAAGLPIA
                     PCGAIANSLFNDSFSLWHQRLPGGPYVEVPLDRTGIAWWTDYHVKFRNPPLVNGSLAL
                     AFQGTAPPPSWHRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSA
                     GLPRGTYRVNITYNYPVRVFGGHKLINFSSISWMGGKNPFLGIAYLVVGSLCILTGFV
                     MLVVYIRYQDQNDDDEDDE"
     misc_feature    439..1308
                     /gene="TMEM30B"
                     /note="LEM3 (ligand-effect modulator 3) family / CDC50
                     family; Region: CDC50; pfam03381"
                     /db_xref="CDD:460906"
ORIGIN      
        1 cccgcgcacc tccgaagagg cggggcgcga ctctcgatta cccgcagggg cggtgctggc
       61 cgatcacctg ggccgaggcg gaactgaagg gtccggtcac tgcccggaga acctgtaact
      121 aagactcacc tgtgcggggg tcggaggcgg ggccggggcc agaactcacc tgagccggtg
      181 gaaacctgcc ctgggggtag ccccgggttc gcccagcgag gagggggagg cgcccccggc
      241 cggccccatc cgagctcccc tccgtgggtc cgcgcggccg ccatgacctg gagcgccacc
      301 gcccggggcg cccaccagcc cgacaacacc gcgttcactc agcagcgcct ccccgcctgg
      361 cagccgctgc tgtcagccag catcacgctg ccgctcttct tctgcgccgg cctggccttc
      421 atcggcctgg gcctgggcct ctactattcc tccaacggca tcaaggagct cgagtacgac
      481 tacaccggcg acccgggcac cggcaactgc tcggtgtgcg ccgccgccgg ccagggccgc
      541 gcgccgccgc cccgctgctc gtgcgcctgg tacttctcgc tgcccgagtt cttccagggc
      601 cccgtgtacc tctactacga gctgaccaac ttctaccaga acaaccggcg ctacggcgtg
      661 tcccgcgacg acgcgcagct gagcgggctg cagagcgcgc tgcgccaccc ggtcaacgag
      721 tgctacccct accagtacag cgcggctggc ctgcccatcg cgccctgcgg cgccatcgcc
      781 aacagcctct tcaacgactc cttctcgctg tggcaccagc gcctgccggg cgggccctac
      841 gtcgaggtgc cgctcgaccg caccggcatc gcctggtgga ccgactacca cgtcaagttc
      901 cgcaacccgc cgctggtgaa cggcagcctg gcgttggcct tccagggcac cgcgcccccg
      961 cccagctggc accggccggt ctacgagctc agcccagacc cgaacaacac cggcttcatc
     1021 aaccaggact tcgtggtatg gatgcgcacg gcggcgctgc ccacgttccg caagctgtac
     1081 gcgcgcatcc gccagggcaa ctactcggcc gggctgccgc ggggcaccta ccgcgtcaac
     1141 atcacctaca actacccggt gcgcgtcttc ggcggccaca agctcatcaa cttcagcagc
     1201 atctcgtgga tgggcggcaa gaatccgttc ctgggcatcg cctacttggt ggtcggctcc
     1261 ctctgcatcc tcacgggatt tgtcatgctg gtcgtctaca ttcgctacca ggaccagaac
     1321 gacgacgacg aggacgacga gtaattcctg ctttcagagt accctttctg cttcttgcca
     1381 aaacgctctt gcaagcttcc tttggtttct ccctcccgac tgtcacccag ttccaacttc
     1441 gcctcacttt gcctccagtt gtg
//
LOCUS       XM_032618350            3482 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat and Ig domain
            containing 1 (LINGO1), transcript variant X1, mRNA.
ACCESSION   XM_032618350
VERSION     XM_032618350.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3482
                     /gene="LINGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 1 long SRA read, 20
                     Proteins, and 80% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746725"
     CDS             623..2485
                     /gene="LINGO1"
                     /codon_start=1
                     /product="leucine-rich repeat and immunoglobulin-like
                     domain-containing nogo receptor-interacting protein 1
                     isoform X1"
                     /protein_id="XP_032474241.1"
                     /db_xref="GeneID:116746725"
                     /translation="MQVSERMLAGGVRSMPSPLLACWQPILLLVLGSVLSGSATGCPP
                     RCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL
                     NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD
                     YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI
                     VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT
                     AVPYLAVRHLVYLRFLNLSYNPINTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL
                     NYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQ
                     QPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADG
                     DPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSM
                     PAHLHVRSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFI
                     SFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI"
     misc_feature    743..847
                     /gene="LINGO1"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    833..>1735
                     /gene="LINGO1"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    839..910
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    911..982
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    983..1054
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1055..1198
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1199..1270
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1271..1414
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1415..1486
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1487..1558
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1559..1630
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1631..1693
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1643..>1885
                     /gene="LINGO1"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    1889..2164
                     /gene="LINGO1"
                     /note="Immunoglobulin I-set domain of the Leucine-rich
                     repeat and immunoglobin-like domain-containing protein 1
                     (Lingo-1); Region: IgI_Lingo-1; cd20969"
                     /db_xref="CDD:409561"
     misc_feature    1889..1900
                     /gene="LINGO1"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409561"
     misc_feature    1913..1927
                     /gene="LINGO1"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409561"
     misc_feature    1943..1972
                     /gene="LINGO1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409561"
     misc_feature    1985..2002
                     /gene="LINGO1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409561"
     misc_feature    2009..2017
                     /gene="LINGO1"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409561"
     misc_feature    2042..2053
                     /gene="LINGO1"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409561"
     misc_feature    2060..2083
                     /gene="LINGO1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409561"
     misc_feature    2099..2125
                     /gene="LINGO1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409561"
     misc_feature    2132..2164
                     /gene="LINGO1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409561"
ORIGIN      
        1 tccccgcgcc gcggcagagc gcggagcccg ggcgggagtc ggcgcgggag ccggagcggg
       61 cggccggccg gcgacagcac aggcggcggc ggcgggtccc ggtcccggcc ccggagcgcg
      121 cggagtcccc acccgcgccg ctccggctcc tctccggacg cggggctccg agcagcatgc
      181 gcggccgctg cccgccggcc tcagccctgg cgccggcccc gctgcggagc gcgcccggcc
      241 tcgaccccgg ccccagtggc agaggcggcg gcggcggcgg cggcggctcc aggctggccc
      301 ggggcacaga acgaggctcg tagagcccgc ctcgccagtc ctgagcgcac acccgcccct
      361 ccgcccgccg gggccccggt ctcccgcccc ccccactccc cggcccttgc cccggccccg
      421 gctccggctt ggctcctgcc cgcgtggggc agacagacgg acggctagcc ccgcgagggc
      481 gcgcggactg ccgggcggag gtgtcggaca aggaggagga gacgaaggag ggggctgggc
      541 aggggctggg caggggctgg ggccctggcg ggggagacat gcgattggtg accgagctga
      601 gcggacggac agcgcgcccg aaatgcaggt gagcgagagg atgctggcgg ggggtgtgag
      661 gagcatgccc agccccctcc tggcctgctg gcagcccatc ctcctgctgg tgctgggctc
      721 ggtgctgtca ggctcagcca caggctgccc gccccgctgc gagtgctccg cccaggaccg
      781 cgctgtgctc tgccaccgca agcgctttgt ggcggtgcct gagggcatcc ccactgagac
      841 ccgcctgctg gacctgggca agaaccgcat caaaacgctc aaccaggacg agtttgccag
      901 cttcccgcac ctggaggagc tggagctcaa tgagaacatc gtgagcgccg tggagcctgg
      961 tgccttcaac aacctcttca acctccggac gctggggctc cgcagcaatc gcctgaagct
     1021 catccccctg ggcgtcttca ccggcctcag taacctgacc aagctggaca tcagcgagaa
     1081 caagatcgtc atcctgctgg actacatgtt ccaggacctg tacaacctca agtcactgga
     1141 agtcggcgac aacgacctcg tctacatctc ccaccgagcc ttcagcggcc tcaacagcct
     1201 ggagcagctg acgctggaga aatgcaacct gacctccatc cccaccgagg cgctctccca
     1261 cctgcacggt ctcatcgtcc tgcggctccg gcacctcaac atcaatgcca tccgggacta
     1321 ttccttcaag aggttgtacc ggctcaaggt cttggagatc tctcactggc cctacttgga
     1381 caccatgact cccaactgtc tctacggcct caacctgacg tccctgtcta tcacgcactg
     1441 caacctgact gctgtgccct acctggcggt gcgccacctg gtctatctcc gcttcctcaa
     1501 cctctcctac aaccccatca acaccattga gggttccatg ttgcatgagc tgctaaggct
     1561 gcaggagatc cagctggtgg gtgggcagct ggccgtggtg gagccctacg ccttccgcgg
     1621 cctcaactac ctgcgcgtgc tcaacgtctc cggcaaccag ctgaccacac tggaggagtc
     1681 ggccttccac tcggtgggca acctggagac gctcatcctg gactccaacc cactggcctg
     1741 cgactgccgg ctcctgtggg tgttccggcg ccgctggcgg ctcaacttca accggcagca
     1801 gcccacgtgt gccacgcccg agttcgtcca gggcaaggag ttcaaggact tccctgatgt
     1861 gctcctgccc aactacttca cctgccgccg tgcccgcatc cgggaccgca aggcccagca
     1921 ggtgtttgtg gatgagggcc acacagtgca gtttgtgtgc cgggcagatg gcgacccgcc
     1981 gcccgccatc ctctggctct cgccccgcaa gcacctggtc tcggccaaga gcaacgggcg
     2041 gctcacggtc ttccccgatg gcacgctgga ggtgcgctac gcccaggtac aggacaacgg
     2101 cacttacctg tgcatcgcgg ccaacgcggg cggcaacgat tccatgcctg cccacctgca
     2161 cgtgcgcagc tactcgcccg actggcccca tcagcccaac aagaccttcg ccttcatctc
     2221 caaccagccg ggcgagggag aggccaacag cacccgcgcc accgtgcctt tccccttcga
     2281 catcaagacc ctcatcatcg ccaccaccat gggctttatc tctttcttgg gcgtcgtcct
     2341 cttctgtctg gtgctgctgt ttctctggag ccggggcaag ggcaacacca agcacaacat
     2401 cgagattgag tatgtgcccc gcaagtcgga cgcaggcatc agctccgccg acgcacctcg
     2461 caagttcaat atgaagatga tatgaggccg gggcgggggg cggggaccct ggggcgtgcc
     2521 gggcagggga agggacctgg ccgccatccg ctcgctctcc agtccttccc acctcctccc
     2581 agcccttcca cacacactct ttttctccct cccacgccgt cccctgctgc ccccgctggc
     2641 cctcaccgcc tgccctcttt ctaccaggac ctcagaagtc caggtctggg gaccccacct
     2701 gcacaggggc acacgttgac agactggagt cggaagctga cacggcacag tcaataattc
     2761 aataaaaagg ttacgaactt cctctgtaac ttgggtttca gtaattatgg atttttatga
     2821 aaacttgaaa taataaaaag agaaaaaaaa aaatatttcc tatagctagt cggaatgcaa
     2881 acttttgacg tcctgattgc tccagggccc tcttccaact cagtttcttg tttttctctt
     2941 cctcctcttc ctcctttctc ttctcttccc ctgtggggag ggatcactca ggaaaacagg
     3001 gaaggaggtt ccagccccac ttgcctgccc acccggccag ggcagtcgcc aggagcaggt
     3061 ttggtggtgg gtctgggccc agctctgggc tggccgtttg cagagagcgg gtggagggga
     3121 cagggctgcc caatggggat gagggcctgt ctgctgagct gccaggcagc actactgcca
     3181 gggggcgggg cctggctcgg gtgtggctga gactctggac aggggctggg gtcctcctgg
     3241 aggacagcac ggtcagtgaa gagagccagg ggccgaggcc taactctggt cccagctttg
     3301 ctgctgactt gctgtgtggc ctcgaacagg tcactgaccc tctctgggcc tcagtctcca
     3361 catctgtata aacggaaacg ctactccccg ccctgcctac ctcacagggc tgttgtgagg
     3421 aattgatgag atgatgtatg tgaaacactt tgtaacctgt aaagtgctgt gcacatgtgt
     3481 gg
//
LOCUS       XM_032618359            4286 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat and Ig domain
            containing 1 (LINGO1), transcript variant X2, mRNA.
ACCESSION   XM_032618359
VERSION     XM_032618359.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4286
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4286
                     /gene="LINGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 20
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746725"
     CDS             1445..3289
                     /gene="LINGO1"
                     /codon_start=1
                     /product="leucine-rich repeat and immunoglobulin-like
                     domain-containing nogo receptor-interacting protein 1
                     isoform X2"
                     /protein_id="XP_032474250.1"
                     /db_xref="GeneID:116746725"
                     /translation="MLAGGVRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSA
                     QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS
                     AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL
                     YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH
                     LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA
                     VRHLVYLRFLNLSYNPINTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL
                     NVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT
                     PEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI
                     LWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV
                     RSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVV
                     LFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI"
     misc_feature    1547..1651
                     /gene="LINGO1"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    1637..>2539
                     /gene="LINGO1"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1643..1714
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1715..1786
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1787..1858
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1859..2002
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2003..2074
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2075..2218
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2219..2290
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2291..2362
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2363..2434
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2435..2497
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2447..>2689
                     /gene="LINGO1"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2693..2968
                     /gene="LINGO1"
                     /note="Immunoglobulin I-set domain of the Leucine-rich
                     repeat and immunoglobin-like domain-containing protein 1
                     (Lingo-1); Region: IgI_Lingo-1; cd20969"
                     /db_xref="CDD:409561"
     misc_feature    2693..2704
                     /gene="LINGO1"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409561"
     misc_feature    2717..2731
                     /gene="LINGO1"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409561"
     misc_feature    2747..2776
                     /gene="LINGO1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409561"
     misc_feature    2789..2806
                     /gene="LINGO1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409561"
     misc_feature    2813..2821
                     /gene="LINGO1"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409561"
     misc_feature    2846..2857
                     /gene="LINGO1"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409561"
     misc_feature    2864..2887
                     /gene="LINGO1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409561"
     misc_feature    2903..2929
                     /gene="LINGO1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409561"
     misc_feature    2936..2968
                     /gene="LINGO1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409561"
ORIGIN      
        1 cgccaggacg cagcgaggag cgaggagcaa gcggagagcc gagggggcgg tggggcccgg
       61 gctcggcggg tcccctcgcc gcccacagtg cgtccgcacc ctgggcccgg cgagtggcgg
      121 gcggcacccc atgtaatgcg gagaatgtga gggcagcgca gggcggtggg gaagaggcgc
      181 gggagagggc gtcggcaaga tagagaggca gccggagaga ctgaggacag ggatcggggc
      241 ggctgcaggt gggagaaagg agaggagata aaaggatagg cagtgacaga aaagagggaa
      301 agaaaggagc gggagagcac gcggctgcag gcggcggagc aggcgaggag gagggagcca
      361 gcgcctctgg gtgggagcgc cggaagccgg agtcgggctc cccggccggg ggtcaggctt
      421 agagcacggc cgcggcccgg cagggcaggg tgaaggagca gggacgcccg agggggcccc
      481 tctgggagca ccggaagacc taaggcgggg ccagcccggt aggaccgcag ggccactcct
      541 caggccccgc tccgggggct ccggcaggcc ggggccaggg gcctttgtga gcgccccagg
      601 agggcgagag tcgggagtgc ggagccgggt gtgcggtggc ggagggtgtg tgcgcgcccg
      661 ggtgtgcgcg tgtgtgcgcg agtgtgagcg cccaggaggg tgggagcgcg cgttagggat
      721 tctgctggca tcgcagagtg gagagcagga ggcaggagtg gggcgcgcag gggagcgcgg
      781 ggctctcccg tgcacacgca cacacaccgc gcgcgctcac acacacatac acatacacac
      841 acgcgcgcac acgccctccc tgcctcgctc gttgccgcgg ccaccatctc agagccgagc
      901 cctgcggagc gggaacccaa gccggagcgg gaacaggagg gaaacggagc cggggaatgc
      961 ggccccggag aggagctgcg cgcagactgc gcgcccggga cgcctcctgc tcccgcaggc
     1021 cctgaggctc ctgtgcccac aggcaaagag agagaccgcg tcaaaccagg ctgatccccc
     1081 agcagctgca ctccccaaac acctgcccga cctgaggtgt ccctctgaag agcccctgag
     1141 cccgctcacg ataacccccc cccagaggga ccccacagcc atgtgctggc tgccttgagt
     1201 ctgcctcctg ccggcattcc agggctctgg ccctgtccag cccctgcacc cgctcccacg
     1261 cctgttcctc acctcagcct gcgccgcagg gactcctcaa gcttcaggac tcagcagacg
     1321 caatagcggt cacgtgcatg ctgggaccga gacggacagg ctgcttctcc tcctgccact
     1381 cctcgggccc ccagaggacc atctgtttgc ctcctggtgc cgtctaaccc aggtgagcga
     1441 gaggatgctg gcggggggtg tgaggagcat gcccagcccc ctcctggcct gctggcagcc
     1501 catcctcctg ctggtgctgg gctcggtgct gtcaggctca gccacaggct gcccgccccg
     1561 ctgcgagtgc tccgcccagg accgcgctgt gctctgccac cgcaagcgct ttgtggcggt
     1621 gcctgagggc atccccactg agacccgcct gctggacctg ggcaagaacc gcatcaaaac
     1681 gctcaaccag gacgagtttg ccagcttccc gcacctggag gagctggagc tcaatgagaa
     1741 catcgtgagc gccgtggagc ctggtgcctt caacaacctc ttcaacctcc ggacgctggg
     1801 gctccgcagc aatcgcctga agctcatccc cctgggcgtc ttcaccggcc tcagtaacct
     1861 gaccaagctg gacatcagcg agaacaagat cgtcatcctg ctggactaca tgttccagga
     1921 cctgtacaac ctcaagtcac tggaagtcgg cgacaacgac ctcgtctaca tctcccaccg
     1981 agccttcagc ggcctcaaca gcctggagca gctgacgctg gagaaatgca acctgacctc
     2041 catccccacc gaggcgctct cccacctgca cggtctcatc gtcctgcggc tccggcacct
     2101 caacatcaat gccatccggg actattcctt caagaggttg taccggctca aggtcttgga
     2161 gatctctcac tggccctact tggacaccat gactcccaac tgtctctacg gcctcaacct
     2221 gacgtccctg tctatcacgc actgcaacct gactgctgtg ccctacctgg cggtgcgcca
     2281 cctggtctat ctccgcttcc tcaacctctc ctacaacccc atcaacacca ttgagggttc
     2341 catgttgcat gagctgctaa ggctgcagga gatccagctg gtgggtgggc agctggccgt
     2401 ggtggagccc tacgccttcc gcggcctcaa ctacctgcgc gtgctcaacg tctccggcaa
     2461 ccagctgacc acactggagg agtcggcctt ccactcggtg ggcaacctgg agacgctcat
     2521 cctggactcc aacccactgg cctgcgactg ccggctcctg tgggtgttcc ggcgccgctg
     2581 gcggctcaac ttcaaccggc agcagcccac gtgtgccacg cccgagttcg tccagggcaa
     2641 ggagttcaag gacttccctg atgtgctcct gcccaactac ttcacctgcc gccgtgcccg
     2701 catccgggac cgcaaggccc agcaggtgtt tgtggatgag ggccacacag tgcagtttgt
     2761 gtgccgggca gatggcgacc cgccgcccgc catcctctgg ctctcgcccc gcaagcacct
     2821 ggtctcggcc aagagcaacg ggcggctcac ggtcttcccc gatggcacgc tggaggtgcg
     2881 ctacgcccag gtacaggaca acggcactta cctgtgcatc gcggccaacg cgggcggcaa
     2941 cgattccatg cctgcccacc tgcacgtgcg cagctactcg cccgactggc cccatcagcc
     3001 caacaagacc ttcgccttca tctccaacca gccgggcgag ggagaggcca acagcacccg
     3061 cgccaccgtg cctttcccct tcgacatcaa gaccctcatc atcgccacca ccatgggctt
     3121 tatctctttc ttgggcgtcg tcctcttctg tctggtgctg ctgtttctct ggagccgggg
     3181 caagggcaac accaagcaca acatcgagat tgagtatgtg ccccgcaagt cggacgcagg
     3241 catcagctcc gccgacgcac ctcgcaagtt caatatgaag atgatatgag gccggggcgg
     3301 ggggcgggga ccctggggcg tgccgggcag gggaagggac ctggccgcca tccgctcgct
     3361 ctccagtcct tcccacctcc tcccagccct tccacacaca ctctttttct ccctcccacg
     3421 ccgtcccctg ctgcccccgc tggccctcac cgcctgccct ctttctacca ggacctcaga
     3481 agtccaggtc tggggacccc acctgcacag gggcacacgt tgacagactg gagtcggaag
     3541 ctgacacggc acagtcaata attcaataaa aaggttacga acttcctctg taacttgggt
     3601 ttcagtaatt atggattttt atgaaaactt gaaataataa aaagagaaaa aaaaaaatat
     3661 ttcctatagc tagtcggaat gcaaactttt gacgtcctga ttgctccagg gccctcttcc
     3721 aactcagttt cttgtttttc tcttcctcct cttcctcctt tctcttctct tcccctgtgg
     3781 ggagggatca ctcaggaaaa cagggaagga ggttccagcc ccacttgcct gcccacccgg
     3841 ccagggcagt cgccaggagc aggtttggtg gtgggtctgg gcccagctct gggctggccg
     3901 tttgcagaga gcgggtggag gggacagggc tgcccaatgg ggatgagggc ctgtctgctg
     3961 agctgccagg cagcactact gccagggggc ggggcctggc tcgggtgtgg ctgagactct
     4021 ggacaggggc tggggtcctc ctggaggaca gcacggtcag tgaagagagc caggggccga
     4081 ggcctaactc tggtcccagc tttgctgctg acttgctgtg tggcctcgaa caggtcactg
     4141 accctctctg ggcctcagtc tccacatctg tataaacgga aacgctactc cccgccctgc
     4201 ctacctcaca gggctgttgt gaggaattga tgagatgatg tatgtgaaac actttgtaac
     4261 ctgtaaagtg ctgtgcacat gtgtgg
//
LOCUS       XM_032618367            4370 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat and Ig domain
            containing 1 (LINGO1), transcript variant X3, mRNA.
ACCESSION   XM_032618367
VERSION     XM_032618367.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4370
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4370
                     /gene="LINGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 15
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746725"
     CDS             1529..3373
                     /gene="LINGO1"
                     /codon_start=1
                     /product="leucine-rich repeat and immunoglobulin-like
                     domain-containing nogo receptor-interacting protein 1
                     isoform X2"
                     /protein_id="XP_032474258.1"
                     /db_xref="GeneID:116746725"
                     /translation="MLAGGVRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSA
                     QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS
                     AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL
                     YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH
                     LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA
                     VRHLVYLRFLNLSYNPINTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL
                     NVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT
                     PEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI
                     LWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV
                     RSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVV
                     LFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI"
     misc_feature    1631..1735
                     /gene="LINGO1"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    1721..>2623
                     /gene="LINGO1"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1727..1798
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1799..1870
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1871..1942
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1943..2086
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2087..2158
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2159..2302
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2303..2374
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2375..2446
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2447..2518
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2519..2581
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2531..>2773
                     /gene="LINGO1"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    2777..3052
                     /gene="LINGO1"
                     /note="Immunoglobulin I-set domain of the Leucine-rich
                     repeat and immunoglobin-like domain-containing protein 1
                     (Lingo-1); Region: IgI_Lingo-1; cd20969"
                     /db_xref="CDD:409561"
     misc_feature    2777..2788
                     /gene="LINGO1"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409561"
     misc_feature    2801..2815
                     /gene="LINGO1"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409561"
     misc_feature    2831..2860
                     /gene="LINGO1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409561"
     misc_feature    2873..2890
                     /gene="LINGO1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409561"
     misc_feature    2897..2905
                     /gene="LINGO1"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409561"
     misc_feature    2930..2941
                     /gene="LINGO1"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409561"
     misc_feature    2948..2971
                     /gene="LINGO1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409561"
     misc_feature    2987..3013
                     /gene="LINGO1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409561"
     misc_feature    3020..3052
                     /gene="LINGO1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409561"
ORIGIN      
        1 cgccaggacg cagcgaggag cgaggagcaa gcggagagcc gagggggcgg tggggcccgg
       61 gctcggcggg tcccctcgcc gcccacagtg cgtccgcacc ctgggcccgg cgagtggcgg
      121 gcggcacccc atgtaatgcg gagaatgtga gggcagcgca gggcggtggg gaagaggcgc
      181 gggagagggc gtcggcaaga tagagaggca gccggagaga ctgaggacag ggatcggggc
      241 ggctgcaggt gggagaaagg agaggagata aaaggatagg cagtgacaga aaagagggaa
      301 agaaaggagc gggagagcac gcggctgcag gcggcggagc aggcgaggag gagggagcca
      361 gcgcctctgg gtgggagcgc cggaagccgg agtcgggctc cccggccggg ggtcaggctt
      421 agagcacggc cgcggcccgg cagggcaggg tgaaggagca gggacgcccg agggggcccc
      481 tctgggagca ccggaagacc taaggcgggg ccagcccggt aggaccgcag ggccactcct
      541 caggccccgc tccgggggct ccggcaggcc ggggccaggg gcctttgtga gcgccccagg
      601 agggcgagag tcgggagtgc ggagccgggt gtgcggtggc ggagggtgtg tgcgcgcccg
      661 ggtgtgcgcg tgtgtgcgcg agtgtgagcg cccaggaggg tgggagcgcg cgttagggat
      721 tctgctggca tcgcagagtg gagagcagga ggcaggagtg gggcgcgcag gggagcgcgg
      781 ggctctcccg tgcacacgca cacacaccgc gcgcgctcac acacacatac acatacacac
      841 acgcgcgcac acgccctccc tgcctcgctc gttgccgcgg ccaccatctc agagccgagc
      901 cctgcggagc gggaacccaa gccggagcgg gaacaggagg gaaacggagc cggggaatgc
      961 ggccccggag aggagctgcg cgcagactgc gcgcccggga cgcctcctgc tcccgcaggc
     1021 cctgaggctc ctgtgcccac aggcaaagag agagaccgcg tcaaaccagg ctgatccccc
     1081 agcagctgca ctccccaaac acctgcccga cctgagacag ggaaagagct ccagaatcta
     1141 tcgtgaggaa cgtgattata caccagcata gagaccatac tctctggcgc gtaactgcag
     1201 gtgtccctct gaagagcccc tgagcccgct cacgataacc cccccccaga gggaccccac
     1261 agccatgtgc tggctgcctt gagtctgcct cctgccggca ttccagggct ctggccctgt
     1321 ccagcccctg cacccgctcc cacgcctgtt cctcacctca gcctgcgccg cagggactcc
     1381 tcaagcttca ggactcagca gacgcaatag cggtcacgtg catgctggga ccgagacgga
     1441 caggctgctt ctcctcctgc cactcctcgg gcccccagag gaccatctgt ttgcctcctg
     1501 gtgccgtcta acccaggtga gcgagaggat gctggcgggg ggtgtgagga gcatgcccag
     1561 ccccctcctg gcctgctggc agcccatcct cctgctggtg ctgggctcgg tgctgtcagg
     1621 ctcagccaca ggctgcccgc cccgctgcga gtgctccgcc caggaccgcg ctgtgctctg
     1681 ccaccgcaag cgctttgtgg cggtgcctga gggcatcccc actgagaccc gcctgctgga
     1741 cctgggcaag aaccgcatca aaacgctcaa ccaggacgag tttgccagct tcccgcacct
     1801 ggaggagctg gagctcaatg agaacatcgt gagcgccgtg gagcctggtg ccttcaacaa
     1861 cctcttcaac ctccggacgc tggggctccg cagcaatcgc ctgaagctca tccccctggg
     1921 cgtcttcacc ggcctcagta acctgaccaa gctggacatc agcgagaaca agatcgtcat
     1981 cctgctggac tacatgttcc aggacctgta caacctcaag tcactggaag tcggcgacaa
     2041 cgacctcgtc tacatctccc accgagcctt cagcggcctc aacagcctgg agcagctgac
     2101 gctggagaaa tgcaacctga cctccatccc caccgaggcg ctctcccacc tgcacggtct
     2161 catcgtcctg cggctccggc acctcaacat caatgccatc cgggactatt ccttcaagag
     2221 gttgtaccgg ctcaaggtct tggagatctc tcactggccc tacttggaca ccatgactcc
     2281 caactgtctc tacggcctca acctgacgtc cctgtctatc acgcactgca acctgactgc
     2341 tgtgccctac ctggcggtgc gccacctggt ctatctccgc ttcctcaacc tctcctacaa
     2401 ccccatcaac accattgagg gttccatgtt gcatgagctg ctaaggctgc aggagatcca
     2461 gctggtgggt gggcagctgg ccgtggtgga gccctacgcc ttccgcggcc tcaactacct
     2521 gcgcgtgctc aacgtctccg gcaaccagct gaccacactg gaggagtcgg ccttccactc
     2581 ggtgggcaac ctggagacgc tcatcctgga ctccaaccca ctggcctgcg actgccggct
     2641 cctgtgggtg ttccggcgcc gctggcggct caacttcaac cggcagcagc ccacgtgtgc
     2701 cacgcccgag ttcgtccagg gcaaggagtt caaggacttc cctgatgtgc tcctgcccaa
     2761 ctacttcacc tgccgccgtg cccgcatccg ggaccgcaag gcccagcagg tgtttgtgga
     2821 tgagggccac acagtgcagt ttgtgtgccg ggcagatggc gacccgccgc ccgccatcct
     2881 ctggctctcg ccccgcaagc acctggtctc ggccaagagc aacgggcggc tcacggtctt
     2941 ccccgatggc acgctggagg tgcgctacgc ccaggtacag gacaacggca cttacctgtg
     3001 catcgcggcc aacgcgggcg gcaacgattc catgcctgcc cacctgcacg tgcgcagcta
     3061 ctcgcccgac tggccccatc agcccaacaa gaccttcgcc ttcatctcca accagccggg
     3121 cgagggagag gccaacagca cccgcgccac cgtgcctttc cccttcgaca tcaagaccct
     3181 catcatcgcc accaccatgg gctttatctc tttcttgggc gtcgtcctct tctgtctggt
     3241 gctgctgttt ctctggagcc ggggcaaggg caacaccaag cacaacatcg agattgagta
     3301 tgtgccccgc aagtcggacg caggcatcag ctccgccgac gcacctcgca agttcaatat
     3361 gaagatgata tgaggccggg gcggggggcg gggaccctgg ggcgtgccgg gcaggggaag
     3421 ggacctggcc gccatccgct cgctctccag tccttcccac ctcctcccag cccttccaca
     3481 cacactcttt ttctccctcc cacgccgtcc cctgctgccc ccgctggccc tcaccgcctg
     3541 ccctctttct accaggacct cagaagtcca ggtctgggga ccccacctgc acaggggcac
     3601 acgttgacag actggagtcg gaagctgaca cggcacagtc aataattcaa taaaaaggtt
     3661 acgaacttcc tctgtaactt gggtttcagt aattatggat ttttatgaaa acttgaaata
     3721 ataaaaagag aaaaaaaaaa atatttccta tagctagtcg gaatgcaaac ttttgacgtc
     3781 ctgattgctc cagggccctc ttccaactca gtttcttgtt tttctcttcc tcctcttcct
     3841 cctttctctt ctcttcccct gtggggaggg atcactcagg aaaacaggga aggaggttcc
     3901 agccccactt gcctgcccac ccggccaggg cagtcgccag gagcaggttt ggtggtgggt
     3961 ctgggcccag ctctgggctg gccgtttgca gagagcgggt ggaggggaca gggctgccca
     4021 atggggatga gggcctgtct gctgagctgc caggcagcac tactgccagg gggcggggcc
     4081 tggctcgggt gtggctgaga ctctggacag gggctggggt cctcctggag gacagcacgg
     4141 tcagtgaaga gagccagggg ccgaggccta actctggtcc cagctttgct gctgacttgc
     4201 tgtgtggcct cgaacaggtc actgaccctc tctgggcctc agtctccaca tctgtataaa
     4261 cggaaacgct actccccgcc ctgcctacct cacagggctg ttgtgaggaa ttgatgagat
     4321 gatgtatgtg aaacactttg taacctgtaa agtgctgtgc acatgtgtgg
//
LOCUS       XM_032618375            3468 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leucine rich repeat and Ig domain
            containing 1 (LINGO1), transcript variant X4, mRNA.
ACCESSION   XM_032618375
VERSION     XM_032618375.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3468
                     /gene="LINGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 1 long SRA read, 15
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116746725"
     CDS             627..2471
                     /gene="LINGO1"
                     /codon_start=1
                     /product="leucine-rich repeat and immunoglobulin-like
                     domain-containing nogo receptor-interacting protein 1
                     isoform X2"
                     /protein_id="XP_032474266.1"
                     /db_xref="GeneID:116746725"
                     /translation="MLAGGVRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSA
                     QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS
                     AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL
                     YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH
                     LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA
                     VRHLVYLRFLNLSYNPINTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL
                     NVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT
                     PEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI
                     LWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV
                     RSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVV
                     LFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI"
     misc_feature    729..833
                     /gene="LINGO1"
                     /note="Leucine rich repeat N-terminal domain; Region:
                     LRRNT; smart00013"
                     /db_xref="CDD:214470"
     misc_feature    819..>1721
                     /gene="LINGO1"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    825..896
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    897..968
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    969..1040
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1041..1184
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1185..1256
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1257..1400
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1401..1472
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1473..1544
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1545..1616
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1617..1679
                     /gene="LINGO1"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    1629..>1871
                     /gene="LINGO1"
                     /note="polycystin cation channel protein; Region: PCC;
                     TIGR00864"
                     /db_xref="CDD:188093"
     misc_feature    1875..2150
                     /gene="LINGO1"
                     /note="Immunoglobulin I-set domain of the Leucine-rich
                     repeat and immunoglobin-like domain-containing protein 1
                     (Lingo-1); Region: IgI_Lingo-1; cd20969"
                     /db_xref="CDD:409561"
     misc_feature    1875..1886
                     /gene="LINGO1"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409561"
     misc_feature    1899..1913
                     /gene="LINGO1"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409561"
     misc_feature    1929..1958
                     /gene="LINGO1"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409561"
     misc_feature    1971..1988
                     /gene="LINGO1"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409561"
     misc_feature    1995..2003
                     /gene="LINGO1"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409561"
     misc_feature    2028..2039
                     /gene="LINGO1"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409561"
     misc_feature    2046..2069
                     /gene="LINGO1"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409561"
     misc_feature    2085..2111
                     /gene="LINGO1"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409561"
     misc_feature    2118..2150
                     /gene="LINGO1"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409561"
ORIGIN      
        1 ggacgccgcc cgcaccgccc cggctgcgcc accatcccgg actgtgccgg cgcaggaggc
       61 cgccctcctc ggcgcccccg ggtggggcag gtcgagcccg cctcctgctc ccgcaggccc
      121 tgaggctcct gtgcccacag gcaaagagag agaccgcgtc aaaccaggct gatcccccag
      181 cagctgcact ccccaaacac ctgcccgacc tgagacaggg aaagagctcc agaatctatc
      241 gtgaggaacg tgattataca ccagcataga gaccatactc tctggcgcgt aactgcaggt
      301 gtccctctga agagcccctg agcccgctca cgataacccc cccccagagg gaccccacag
      361 ccatgtgctg gctgccttga gtctgcctcc tgccggcatt ccagggctct ggccctgtcc
      421 agcccctgca cccgctccca cgcctgttcc tcacctcagc ctgcgccgca gggactcctc
      481 aagcttcagg actcagcaga cgcaatagcg gtcacgtgca tgctgggacc gagacggaca
      541 ggctgcttct cctcctgcca ctcctcgggc ccccagagga ccatctgttt gcctcctggt
      601 gccgtctaac ccaggtgagc gagaggatgc tggcgggggg tgtgaggagc atgcccagcc
      661 ccctcctggc ctgctggcag cccatcctcc tgctggtgct gggctcggtg ctgtcaggct
      721 cagccacagg ctgcccgccc cgctgcgagt gctccgccca ggaccgcgct gtgctctgcc
      781 accgcaagcg ctttgtggcg gtgcctgagg gcatccccac tgagacccgc ctgctggacc
      841 tgggcaagaa ccgcatcaaa acgctcaacc aggacgagtt tgccagcttc ccgcacctgg
      901 aggagctgga gctcaatgag aacatcgtga gcgccgtgga gcctggtgcc ttcaacaacc
      961 tcttcaacct ccggacgctg gggctccgca gcaatcgcct gaagctcatc cccctgggcg
     1021 tcttcaccgg cctcagtaac ctgaccaagc tggacatcag cgagaacaag atcgtcatcc
     1081 tgctggacta catgttccag gacctgtaca acctcaagtc actggaagtc ggcgacaacg
     1141 acctcgtcta catctcccac cgagccttca gcggcctcaa cagcctggag cagctgacgc
     1201 tggagaaatg caacctgacc tccatcccca ccgaggcgct ctcccacctg cacggtctca
     1261 tcgtcctgcg gctccggcac ctcaacatca atgccatccg ggactattcc ttcaagaggt
     1321 tgtaccggct caaggtcttg gagatctctc actggcccta cttggacacc atgactccca
     1381 actgtctcta cggcctcaac ctgacgtccc tgtctatcac gcactgcaac ctgactgctg
     1441 tgccctacct ggcggtgcgc cacctggtct atctccgctt cctcaacctc tcctacaacc
     1501 ccatcaacac cattgagggt tccatgttgc atgagctgct aaggctgcag gagatccagc
     1561 tggtgggtgg gcagctggcc gtggtggagc cctacgcctt ccgcggcctc aactacctgc
     1621 gcgtgctcaa cgtctccggc aaccagctga ccacactgga ggagtcggcc ttccactcgg
     1681 tgggcaacct ggagacgctc atcctggact ccaacccact ggcctgcgac tgccggctcc
     1741 tgtgggtgtt ccggcgccgc tggcggctca acttcaaccg gcagcagccc acgtgtgcca
     1801 cgcccgagtt cgtccagggc aaggagttca aggacttccc tgatgtgctc ctgcccaact
     1861 acttcacctg ccgccgtgcc cgcatccggg accgcaaggc ccagcaggtg tttgtggatg
     1921 agggccacac agtgcagttt gtgtgccggg cagatggcga cccgccgccc gccatcctct
     1981 ggctctcgcc ccgcaagcac ctggtctcgg ccaagagcaa cgggcggctc acggtcttcc
     2041 ccgatggcac gctggaggtg cgctacgccc aggtacagga caacggcact tacctgtgca
     2101 tcgcggccaa cgcgggcggc aacgattcca tgcctgccca cctgcacgtg cgcagctact
     2161 cgcccgactg gccccatcag cccaacaaga ccttcgcctt catctccaac cagccgggcg
     2221 agggagaggc caacagcacc cgcgccaccg tgcctttccc cttcgacatc aagaccctca
     2281 tcatcgccac caccatgggc tttatctctt tcttgggcgt cgtcctcttc tgtctggtgc
     2341 tgctgtttct ctggagccgg ggcaagggca acaccaagca caacatcgag attgagtatg
     2401 tgccccgcaa gtcggacgca ggcatcagct ccgccgacgc acctcgcaag ttcaatatga
     2461 agatgatatg aggccggggc ggggggcggg gaccctgggg cgtgccgggc aggggaaggg
     2521 acctggccgc catccgctcg ctctccagtc cttcccacct cctcccagcc cttccacaca
     2581 cactcttttt ctccctccca cgccgtcccc tgctgccccc gctggccctc accgcctgcc
     2641 ctctttctac caggacctca gaagtccagg tctggggacc ccacctgcac aggggcacac
     2701 gttgacagac tggagtcgga agctgacacg gcacagtcaa taattcaata aaaaggttac
     2761 gaacttcctc tgtaacttgg gtttcagtaa ttatggattt ttatgaaaac ttgaaataat
     2821 aaaaagagaa aaaaaaaaat atttcctata gctagtcgga atgcaaactt ttgacgtcct
     2881 gattgctcca gggccctctt ccaactcagt ttcttgtttt tctcttcctc ctcttcctcc
     2941 tttctcttct cttcccctgt ggggagggat cactcaggaa aacagggaag gaggttccag
     3001 ccccacttgc ctgcccaccc ggccagggca gtcgccagga gcaggtttgg tggtgggtct
     3061 gggcccagct ctgggctggc cgtttgcaga gagcgggtgg aggggacagg gctgcccaat
     3121 ggggatgagg gcctgtctgc tgagctgcca ggcagcacta ctgccagggg gcggggcctg
     3181 gctcgggtgt ggctgagact ctggacaggg gctggggtcc tcctggagga cagcacggtc
     3241 agtgaagaga gccaggggcc gaggcctaac tctggtccca gctttgctgc tgacttgctg
     3301 tgtggcctcg aacaggtcac tgaccctctc tgggcctcag tctccacatc tgtataaacg
     3361 gaaacgctac tccccgccct gcctacctca cagggctgtt gtgaggaatt gatgagatga
     3421 tgtatgtgaa acactttgta acctgtaaag tgctgtgcac atgtgtgg
//
LOCUS       XR_004347858             276 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746739
            (LOC116746739), ncRNA.
ACCESSION   XR_004347858
VERSION     XR_004347858.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..276
                     /gene="LOC116746739"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746739"
     ncRNA           1..276
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746739"
                     /product="uncharacterized LOC116746739"
                     /db_xref="GeneID:116746739"
ORIGIN      
        1 gctctctggg ttttccacgc tcggacctcc agagattcgt ggggggccaa cgtctgagcg
       61 gacagattaa aaccgctatt aacgtgcttt cgctctacaa actgagtttg atttccaagc
      121 cagagtacgc cccaaggagg cagtccgcag atgccgcctg ggatatgaag caacaagttc
      181 tcatgcccat gaccctgtaa acacagcaag gagtgattct ttcatctctc aatgctggac
      241 ttcagagtat tcacaagcct caaaaattcg gtggaa
//
LOCUS       XM_032618399            4864 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X1, mRNA.
ACCESSION   XM_032618399
VERSION     XM_032618399.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4864
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4864
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 19 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             341..2071
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X1"
                     /protein_id="XP_032474290.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPALSAGSGSDTGLYELLAALPAQLRPHVDSQEDLTFLWDVFGE
                     KSLHSLVKIHEKLHYYEKQNPTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKP
                     NVKALLSVHDTVALKNYDPVLPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTG
                     AVVVARIMRGGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIP
                     SIKEDTPSKEGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAK
                     HEGDANPRAGLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTN
                     KSMYECKKSDQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISD
                     TQHYGVTVPHTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSID
                     SVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRD
                     EQGAAKPFTEEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDT
                     HWVPVSWLHS"
     misc_feature    386..544
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    581..715
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    752..994
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(782..802,833..835,842..844,932..934,944..946,
                     953..958)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    1034..1216
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(1040..1042,1112..1117)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(1049..1051,1055..1057,1064..1066,1097..1099,
                     1151..1156,1205..1207,1211..1216)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1490..2029
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 gggctggagc gggggccggg ctgccggact cgtgcgtctt gcgcccgccg cggcggtacc
       61 gagtccgcag gctgctgatt gtccttcgcg gcggccgcgg tcgcagcctc cttgcctcgg
      121 ccggggctgc ctgcgccggc ccgagcgcgc ctcccgcggc cacggccgcc cggagcagaa
      181 acggactgca ggagacatag atctgggtag acagcgtggc tgcaggcctc agggttggca
      241 tccctgccgc ctttgaacgg agcgtgttgg cacttcaggg cccagctcag cctgcatcct
      301 gcatcccgca tcgcacatcc tgcatcccgc atcctgcatc atgcccgcgc tgtccgcagg
      361 ctcggggagc gacacaggtc tgtatgagct gctggcggct ctgccagccc agctgcggcc
      421 acatgtggac agccaggaag acctgacctt cctctgggat gtgtttggtg aaaaaagcct
      481 gcattcgcta gtcaagattc acgagaagct tcactactac gagaagcaga atcccacgcc
      541 catcctccag ggtgcggcag ccttagctgg tgacctggcg gaggagcttc agagcaagcc
      601 gttaaacagc gagatcagag agctgttgaa gctactgtca aaacccaatg tgaaggcttt
      661 gctctctgtg cacgataccg tggctctgaa gaactatgac cccgtgttgc ctcctatgcc
      721 tgatgacatt gatgaggagg aagactccgt gaaaatcatc cgtctggtca agaaccgaga
      781 gccgctggga gctaccatta agaaagatga gcccaccggg gccgtggttg tggccagaat
      841 catgagagga ggagctgcag acagaagtgg tcttattcac gttggtgatg aacttaggga
      901 agtgaatggg atacctgtcg aggataaaag ccctgaggaa atcattcaga tcttggctca
      961 gtctcagggc gcaatcacat tcaagattat acccagcatc aaggaggaca caccatcaaa
     1021 ggagggcaag atgtttatca aagccctctt tgactatgac cctaatgagg ataaagcaat
     1081 tccatgtaag gaagctgggc tttctttcaa aaagggagat attcttcaga ttatgagcca
     1141 ggatgatgca acatggtggc aggcgaagca cgaaggagat gccaatccca gagcaggctt
     1201 gattccctca aagcatttcc aggaaaggag attggctctg agacgaccag aaatactagt
     1261 ccagcccctg caagtttcca acaggaaatc atctggtttt agaagaagtt tccgtcttag
     1321 tagaaaagat aagaaaacaa ataaatccat gtatgagtgc aagaagagtg accagtacga
     1381 cacagccgat gtgcccactt atgaggaggt gacaccctat cgacggcaga tgaatgagaa
     1441 ctacagactc gttgtcttgg ttggtcctgt aggggtaggt ttgaacgaac tgaaacgaaa
     1501 gctgctgatc agtgacacac agcactacgg cgtgacggtg ccccacacca ccagaccaag
     1561 aagaagccag gagagtgatg gtgttgaata tgtcttcgtt tccaagcact tgtttgagac
     1621 cgatgtacaa aataacaagt tcattgaata tggtgaatat aaaaacaact attacggcac
     1681 aagtatagac tcagttcggt ctgtcctagc taaaaacaaa gtttgtttgt tggacgttca
     1741 gcctcatacg gtgaagcact taaggacact agaatttaag ccctatgtga tatttataaa
     1801 gcctccgtca atagagcgtt tgagggagac aagaaaaaat gcaaagatta tttcaagcag
     1861 agatgagcaa ggtgccgcca agccctttac ggaggaagac tttcaagaaa tgattaaatc
     1921 tgcccagata atggaaagtc aatatggtca tctttttgac aaaactatag taaatgatga
     1981 tctcaccgtg gccttcagtg agcttaaaac aacttttgac aaactggaga cagataccca
     2041 ctgggttcca gtgagctggt tgcattcgta actaagggaa atttccataa ttatcttttc
     2101 tgtagagtgc atggttaaat cagttgccat tttggtggta ggtttaatct atatcactgt
     2161 taagatgtgc agtcttggtt aaaattgatg tgttggtctt gtttgtgtct ttttacagcc
     2221 ttatttcaag cacagtgttt gagtttaagg tccaaagtca aaatctgcac agtaccgtat
     2281 tctggttgtc ttgactgtgt agctctatct ccaaaatggg gttgaacttt ttagagagac
     2341 acagctggag gatgtacacg agagttcagt gcttcagctg gtctccgacg tcatcactgc
     2401 cttggagttt gcatgtcagc cgctgaatac gttcagttca cagtcttcag gagccagaca
     2461 tcatcataga ggcgcctggg ctggcagtaa ggccgagtct tcttactgtt ctgcaagtgc
     2521 aaactttttc ttacgtagac acaacatatt cacagttaca gtttgagaag gccttatgag
     2581 tgcatatatc agtgactcaa caaatgttta ataagggaag atgggctttt aaaaattacc
     2641 atttatgaaa ctaaaaacct ttctttatgg cttaagaatg gtgatatcct ggggcaagta
     2701 agattacaaa ggacattttt atttgtaaat cctcagacaa catttctgga ctcaccagaa
     2761 attctggagc cagttatttg gctttgggtt ttcccaataa attataagaa tgattcctat
     2821 tctaaaagta ggttttactt gttactgcta cagttaagga aaatgtgatc atttttcaaa
     2881 tgtgtgcagt tgatgacaat atatttaaat tgcactgtaa gatatatttt agaaaacttt
     2941 tcatgtaatg ttatttcttc gtcatcaaaa tatttaacac tggccagata ccatcctagt
     3001 cttgccattt ttaaagaagt ttaagaaaga ctcttttgtt gtaaatattt agatgggatc
     3061 tctcattttt ctttgatgcc actcatcttc agcgagtaaa ttatatagct caaaatacca
     3121 gaaatgtcca tagttgtgta agagaacatg tccttccatt cttgcatgcc gtaagaccct
     3181 gtcaatcaga aatcattgca tctgcgactt tcaagcagaa aaaacggtat tttttgttga
     3241 tttgtaaaga gagtttagat gtcctgttta aagaaaaaga gtgtagtgaa attttatata
     3301 tttatgaaat atttgaaagg catatttttt taattatcaa atgagactat tcattaaata
     3361 aatagtatgt aaagacatca taatttaaga tagtagtttt ataagtcagg gtcaacattc
     3421 catgtaaata tttgaccttt attcatatgc agatccacaa gtgtgttctg tgtgcacatt
     3481 tgatagcatc actcactgag tttccttcag acgtgtcaaa tttcatacct tgatacacac
     3541 tcacagctaa atagttagat aaccagacat tgttacttga cagcataatc caaacagcaa
     3601 ggtctaagtt aattaactaa atagcaagca atttagttta aaaaggggtt ggtgagggct
     3661 ttcctggtgg cgcagtggtt gagagtctgc ctgccgatgc aggggacacg ggttcgtgcc
     3721 ccggtctggg aggatcccgc gtgcggcgga gcggctgggc ccgtgagcca cggccgctga
     3781 gcctgcgcgt ccggagcctg tgctccgcaa cgggagaggc cacaacagtg agaggcccgc
     3841 gtgccacaaa aaaaaaaaaa aaaaaaaggg gggggttggt gggttgccag atctaatatt
     3901 gaagccatac tttatagttg tgtggctggt ctaagaaagt acaaatcttc cttaggtggt
     3961 ttgggtagaa tattctcttt gaacattgac tgaaatttcc gaaaaatcag gacttcctag
     4021 gaaatgaatt ataatttagg cagtccaaat tctttgttca gaaatagtac ctggtttgct
     4081 ttttttcatt tacagacaat tgcctcaatt ctttcctgcg gaggtagaga tagtgtaatg
     4141 tggtagaaac ggggtccttt ttggtggtgg tggtggaggt gttatagaac tatatttgtc
     4201 cagcctttct ccctttttac acgagagctg ggcagtattt ttttaaataa tgaaaagagg
     4261 tacttcagca atttgaaaaa tcttttatca ggtaatatac atacgtggtc ttgcaagtga
     4321 catttacatg gccaccttga tgcttagaaa gagattcagt taaaatttaa tgcggcaggg
     4381 ccaactccat ggcctctgat taatgttgca aagggccctt gattctgtgc tttatgcatc
     4441 ctcagctccc tctctagcaa ggacagacta gttctttagg cagcttgctt ctgagacagt
     4501 gtcagccact atttgagaga acaggaatat tgggtttttt aagtccatgt atttaaaatc
     4561 caagatcaag aagataattc tatactccca ttattaacat actggaatct ttttttttta
     4621 ccattatttt acttaccaat atagacatta tcgatatctt taaggctgac cttcctggca
     4681 ttgtgtaatg attgaatgta tctaaattgt aataatttaa aattgacaaa catgtaaaac
     4741 gaaattatgt tgttaaaagt ttcctgaaga tagagtttta ttatttattt tctttttgac
     4801 tagtgagagt ttataaataa aagtcatgga aaacctttga gcttaataaa gtatcttcaa
     4861 atta
//
LOCUS       XM_032618406            4912 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X2, mRNA.
ACCESSION   XM_032618406
VERSION     XM_032618406.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4912
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4912
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 19 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             389..2119
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X1"
                     /protein_id="XP_032474297.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPALSAGSGSDTGLYELLAALPAQLRPHVDSQEDLTFLWDVFGE
                     KSLHSLVKIHEKLHYYEKQNPTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKP
                     NVKALLSVHDTVALKNYDPVLPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTG
                     AVVVARIMRGGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIP
                     SIKEDTPSKEGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAK
                     HEGDANPRAGLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTN
                     KSMYECKKSDQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISD
                     TQHYGVTVPHTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSID
                     SVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRD
                     EQGAAKPFTEEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDT
                     HWVPVSWLHS"
     misc_feature    434..592
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    629..763
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    800..1042
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(830..850,881..883,890..892,980..982,992..994,
                     1001..1006)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    1082..1264
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(1088..1090,1160..1165)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(1097..1099,1103..1105,1112..1114,1145..1147,
                     1199..1204,1253..1255,1259..1264)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1538..2077
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 gggctggagc gggggccggg ctgccggact cgtgcgtctt gcgcccgccg cggcggtacc
       61 gagtccgcag gctgctgatt gtccttcgcg gcggccgcgg tcgcagcctc cttgcctcgg
      121 ccggggctgc ctgcgccggc ccgagcgcgc ctcccgcggc cacggccgcc cggagcaggt
      181 tgctaagata gtttgaattt catcagaaag gtgatttttc acacagaaac ggactgcagg
      241 agacatagat ctgggtagac agcgtggctg caggcctcag ggttggcatc cctgccgcct
      301 ttgaacggag cgtgttggca cttcagggcc cagctcagcc tgcatcctgc atcccgcatc
      361 gcacatcctg catcccgcat cctgcatcat gcccgcgctg tccgcaggct cggggagcga
      421 cacaggtctg tatgagctgc tggcggctct gccagcccag ctgcggccac atgtggacag
      481 ccaggaagac ctgaccttcc tctgggatgt gtttggtgaa aaaagcctgc attcgctagt
      541 caagattcac gagaagcttc actactacga gaagcagaat cccacgccca tcctccaggg
      601 tgcggcagcc ttagctggtg acctggcgga ggagcttcag agcaagccgt taaacagcga
      661 gatcagagag ctgttgaagc tactgtcaaa acccaatgtg aaggctttgc tctctgtgca
      721 cgataccgtg gctctgaaga actatgaccc cgtgttgcct cctatgcctg atgacattga
      781 tgaggaggaa gactccgtga aaatcatccg tctggtcaag aaccgagagc cgctgggagc
      841 taccattaag aaagatgagc ccaccggggc cgtggttgtg gccagaatca tgagaggagg
      901 agctgcagac agaagtggtc ttattcacgt tggtgatgaa cttagggaag tgaatgggat
      961 acctgtcgag gataaaagcc ctgaggaaat cattcagatc ttggctcagt ctcagggcgc
     1021 aatcacattc aagattatac ccagcatcaa ggaggacaca ccatcaaagg agggcaagat
     1081 gtttatcaaa gccctctttg actatgaccc taatgaggat aaagcaattc catgtaagga
     1141 agctgggctt tctttcaaaa agggagatat tcttcagatt atgagccagg atgatgcaac
     1201 atggtggcag gcgaagcacg aaggagatgc caatcccaga gcaggcttga ttccctcaaa
     1261 gcatttccag gaaaggagat tggctctgag acgaccagaa atactagtcc agcccctgca
     1321 agtttccaac aggaaatcat ctggttttag aagaagtttc cgtcttagta gaaaagataa
     1381 gaaaacaaat aaatccatgt atgagtgcaa gaagagtgac cagtacgaca cagccgatgt
     1441 gcccacttat gaggaggtga caccctatcg acggcagatg aatgagaact acagactcgt
     1501 tgtcttggtt ggtcctgtag gggtaggttt gaacgaactg aaacgaaagc tgctgatcag
     1561 tgacacacag cactacggcg tgacggtgcc ccacaccacc agaccaagaa gaagccagga
     1621 gagtgatggt gttgaatatg tcttcgtttc caagcacttg tttgagaccg atgtacaaaa
     1681 taacaagttc attgaatatg gtgaatataa aaacaactat tacggcacaa gtatagactc
     1741 agttcggtct gtcctagcta aaaacaaagt ttgtttgttg gacgttcagc ctcatacggt
     1801 gaagcactta aggacactag aatttaagcc ctatgtgata tttataaagc ctccgtcaat
     1861 agagcgtttg agggagacaa gaaaaaatgc aaagattatt tcaagcagag atgagcaagg
     1921 tgccgccaag ccctttacgg aggaagactt tcaagaaatg attaaatctg cccagataat
     1981 ggaaagtcaa tatggtcatc tttttgacaa aactatagta aatgatgatc tcaccgtggc
     2041 cttcagtgag cttaaaacaa cttttgacaa actggagaca gatacccact gggttccagt
     2101 gagctggttg cattcgtaac taagggaaat ttccataatt atcttttctg tagagtgcat
     2161 ggttaaatca gttgccattt tggtggtagg tttaatctat atcactgtta agatgtgcag
     2221 tcttggttaa aattgatgtg ttggtcttgt ttgtgtcttt ttacagcctt atttcaagca
     2281 cagtgtttga gtttaaggtc caaagtcaaa atctgcacag taccgtattc tggttgtctt
     2341 gactgtgtag ctctatctcc aaaatggggt tgaacttttt agagagacac agctggagga
     2401 tgtacacgag agttcagtgc ttcagctggt ctccgacgtc atcactgcct tggagtttgc
     2461 atgtcagccg ctgaatacgt tcagttcaca gtcttcagga gccagacatc atcatagagg
     2521 cgcctgggct ggcagtaagg ccgagtcttc ttactgttct gcaagtgcaa actttttctt
     2581 acgtagacac aacatattca cagttacagt ttgagaaggc cttatgagtg catatatcag
     2641 tgactcaaca aatgtttaat aagggaagat gggcttttaa aaattaccat ttatgaaact
     2701 aaaaaccttt ctttatggct taagaatggt gatatcctgg ggcaagtaag attacaaagg
     2761 acatttttat ttgtaaatcc tcagacaaca tttctggact caccagaaat tctggagcca
     2821 gttatttggc tttgggtttt cccaataaat tataagaatg attcctattc taaaagtagg
     2881 ttttacttgt tactgctaca gttaaggaaa atgtgatcat ttttcaaatg tgtgcagttg
     2941 atgacaatat atttaaattg cactgtaaga tatattttag aaaacttttc atgtaatgtt
     3001 atttcttcgt catcaaaata tttaacactg gccagatacc atcctagtct tgccattttt
     3061 aaagaagttt aagaaagact cttttgttgt aaatatttag atgggatctc tcatttttct
     3121 ttgatgccac tcatcttcag cgagtaaatt atatagctca aaataccaga aatgtccata
     3181 gttgtgtaag agaacatgtc cttccattct tgcatgccgt aagaccctgt caatcagaaa
     3241 tcattgcatc tgcgactttc aagcagaaaa aacggtattt tttgttgatt tgtaaagaga
     3301 gtttagatgt cctgtttaaa gaaaaagagt gtagtgaaat tttatatatt tatgaaatat
     3361 ttgaaaggca tattttttta attatcaaat gagactattc attaaataaa tagtatgtaa
     3421 agacatcata atttaagata gtagttttat aagtcagggt caacattcca tgtaaatatt
     3481 tgacctttat tcatatgcag atccacaagt gtgttctgtg tgcacatttg atagcatcac
     3541 tcactgagtt tccttcagac gtgtcaaatt tcataccttg atacacactc acagctaaat
     3601 agttagataa ccagacattg ttacttgaca gcataatcca aacagcaagg tctaagttaa
     3661 ttaactaaat agcaagcaat ttagtttaaa aaggggttgg tgagggcttt cctggtggcg
     3721 cagtggttga gagtctgcct gccgatgcag gggacacggg ttcgtgcccc ggtctgggag
     3781 gatcccgcgt gcggcggagc ggctgggccc gtgagccacg gccgctgagc ctgcgcgtcc
     3841 ggagcctgtg ctccgcaacg ggagaggcca caacagtgag aggcccgcgt gccacaaaaa
     3901 aaaaaaaaaa aaaaaggggg gggttggtgg gttgccagat ctaatattga agccatactt
     3961 tatagttgtg tggctggtct aagaaagtac aaatcttcct taggtggttt gggtagaata
     4021 ttctctttga acattgactg aaatttccga aaaatcagga cttcctagga aatgaattat
     4081 aatttaggca gtccaaattc tttgttcaga aatagtacct ggtttgcttt ttttcattta
     4141 cagacaattg cctcaattct ttcctgcgga ggtagagata gtgtaatgtg gtagaaacgg
     4201 ggtccttttt ggtggtggtg gtggaggtgt tatagaacta tatttgtcca gcctttctcc
     4261 ctttttacac gagagctggg cagtattttt ttaaataatg aaaagaggta cttcagcaat
     4321 ttgaaaaatc ttttatcagg taatatacat acgtggtctt gcaagtgaca tttacatggc
     4381 caccttgatg cttagaaaga gattcagtta aaatttaatg cggcagggcc aactccatgg
     4441 cctctgatta atgttgcaaa gggcccttga ttctgtgctt tatgcatcct cagctccctc
     4501 tctagcaagg acagactagt tctttaggca gcttgcttct gagacagtgt cagccactat
     4561 ttgagagaac aggaatattg ggttttttaa gtccatgtat ttaaaatcca agatcaagaa
     4621 gataattcta tactcccatt attaacatac tggaatcttt tttttttacc attattttac
     4681 ttaccaatat agacattatc gatatcttta aggctgacct tcctggcatt gtgtaatgat
     4741 tgaatgtatc taaattgtaa taatttaaaa ttgacaaaca tgtaaaacga aattatgttg
     4801 ttaaaagttt cctgaagata gagttttatt atttattttc tttttgacta gtgagagttt
     4861 ataaataaaa gtcatggaaa acctttgagc ttaataaagt atcttcaaat ta
//
LOCUS       XM_032618416            5023 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X3, mRNA.
ACCESSION   XM_032618416
VERSION     XM_032618416.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5023
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5023
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 19 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746742"
     CDS             500..2230
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X1"
                     /protein_id="XP_032474307.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPALSAGSGSDTGLYELLAALPAQLRPHVDSQEDLTFLWDVFGE
                     KSLHSLVKIHEKLHYYEKQNPTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKP
                     NVKALLSVHDTVALKNYDPVLPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTG
                     AVVVARIMRGGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIP
                     SIKEDTPSKEGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAK
                     HEGDANPRAGLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTN
                     KSMYECKKSDQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISD
                     TQHYGVTVPHTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSID
                     SVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRD
                     EQGAAKPFTEEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDT
                     HWVPVSWLHS"
     misc_feature    545..703
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    740..874
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    911..1153
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(941..961,992..994,1001..1003,1091..1093,1103..1105,
                     1112..1117)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    1193..1375
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(1199..1201,1271..1276)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(1208..1210,1214..1216,1223..1225,1256..1258,
                     1310..1315,1364..1366,1370..1375)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1649..2188
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 gggctggagc gggggccggg ctgccggact cgtgcgtctt gcgcccgccg cggcggtacc
       61 gagtccgcag gctgctgatt gtccttcgcg gcggccgcgg tcgcagcctc cttgcctcgg
      121 ccggggctgc ctgcgccggc ccgagcgcgc ctcccgcggc cacggccgcc cggagcagga
      181 agaagcgttg attaagccat gaatctagag gtgcatttta gtttggctga agatgtctgg
      241 ttattcacat cgcgggtgtt tttctgactt aaacgctcaa ggtcaagcta cgtgggtgag
      301 aacatcgctc attccttagt cggcctgagt gtcagagaaa cggactgcag gagacataga
      361 tctgggtaga cagcgtggct gcaggcctca gggttggcat ccctgccgcc tttgaacgga
      421 gcgtgttggc acttcagggc ccagctcagc ctgcatcctg catcccgcat cgcacatcct
      481 gcatcccgca tcctgcatca tgcccgcgct gtccgcaggc tcggggagcg acacaggtct
      541 gtatgagctg ctggcggctc tgccagccca gctgcggcca catgtggaca gccaggaaga
      601 cctgaccttc ctctgggatg tgtttggtga aaaaagcctg cattcgctag tcaagattca
      661 cgagaagctt cactactacg agaagcagaa tcccacgccc atcctccagg gtgcggcagc
      721 cttagctggt gacctggcgg aggagcttca gagcaagccg ttaaacagcg agatcagaga
      781 gctgttgaag ctactgtcaa aacccaatgt gaaggctttg ctctctgtgc acgataccgt
      841 ggctctgaag aactatgacc ccgtgttgcc tcctatgcct gatgacattg atgaggagga
      901 agactccgtg aaaatcatcc gtctggtcaa gaaccgagag ccgctgggag ctaccattaa
      961 gaaagatgag cccaccgggg ccgtggttgt ggccagaatc atgagaggag gagctgcaga
     1021 cagaagtggt cttattcacg ttggtgatga acttagggaa gtgaatggga tacctgtcga
     1081 ggataaaagc cctgaggaaa tcattcagat cttggctcag tctcagggcg caatcacatt
     1141 caagattata cccagcatca aggaggacac accatcaaag gagggcaaga tgtttatcaa
     1201 agccctcttt gactatgacc ctaatgagga taaagcaatt ccatgtaagg aagctgggct
     1261 ttctttcaaa aagggagata ttcttcagat tatgagccag gatgatgcaa catggtggca
     1321 ggcgaagcac gaaggagatg ccaatcccag agcaggcttg attccctcaa agcatttcca
     1381 ggaaaggaga ttggctctga gacgaccaga aatactagtc cagcccctgc aagtttccaa
     1441 caggaaatca tctggtttta gaagaagttt ccgtcttagt agaaaagata agaaaacaaa
     1501 taaatccatg tatgagtgca agaagagtga ccagtacgac acagccgatg tgcccactta
     1561 tgaggaggtg acaccctatc gacggcagat gaatgagaac tacagactcg ttgtcttggt
     1621 tggtcctgta ggggtaggtt tgaacgaact gaaacgaaag ctgctgatca gtgacacaca
     1681 gcactacggc gtgacggtgc cccacaccac cagaccaaga agaagccagg agagtgatgg
     1741 tgttgaatat gtcttcgttt ccaagcactt gtttgagacc gatgtacaaa ataacaagtt
     1801 cattgaatat ggtgaatata aaaacaacta ttacggcaca agtatagact cagttcggtc
     1861 tgtcctagct aaaaacaaag tttgtttgtt ggacgttcag cctcatacgg tgaagcactt
     1921 aaggacacta gaatttaagc cctatgtgat atttataaag cctccgtcaa tagagcgttt
     1981 gagggagaca agaaaaaatg caaagattat ttcaagcaga gatgagcaag gtgccgccaa
     2041 gccctttacg gaggaagact ttcaagaaat gattaaatct gcccagataa tggaaagtca
     2101 atatggtcat ctttttgaca aaactatagt aaatgatgat ctcaccgtgg ccttcagtga
     2161 gcttaaaaca acttttgaca aactggagac agatacccac tgggttccag tgagctggtt
     2221 gcattcgtaa ctaagggaaa tttccataat tatcttttct gtagagtgca tggttaaatc
     2281 agttgccatt ttggtggtag gtttaatcta tatcactgtt aagatgtgca gtcttggtta
     2341 aaattgatgt gttggtcttg tttgtgtctt tttacagcct tatttcaagc acagtgtttg
     2401 agtttaaggt ccaaagtcaa aatctgcaca gtaccgtatt ctggttgtct tgactgtgta
     2461 gctctatctc caaaatgggg ttgaactttt tagagagaca cagctggagg atgtacacga
     2521 gagttcagtg cttcagctgg tctccgacgt catcactgcc ttggagtttg catgtcagcc
     2581 gctgaatacg ttcagttcac agtcttcagg agccagacat catcatagag gcgcctgggc
     2641 tggcagtaag gccgagtctt cttactgttc tgcaagtgca aactttttct tacgtagaca
     2701 caacatattc acagttacag tttgagaagg ccttatgagt gcatatatca gtgactcaac
     2761 aaatgtttaa taagggaaga tgggctttta aaaattacca tttatgaaac taaaaacctt
     2821 tctttatggc ttaagaatgg tgatatcctg gggcaagtaa gattacaaag gacattttta
     2881 tttgtaaatc ctcagacaac atttctggac tcaccagaaa ttctggagcc agttatttgg
     2941 ctttgggttt tcccaataaa ttataagaat gattcctatt ctaaaagtag gttttacttg
     3001 ttactgctac agttaaggaa aatgtgatca tttttcaaat gtgtgcagtt gatgacaata
     3061 tatttaaatt gcactgtaag atatatttta gaaaactttt catgtaatgt tatttcttcg
     3121 tcatcaaaat atttaacact ggccagatac catcctagtc ttgccatttt taaagaagtt
     3181 taagaaagac tcttttgttg taaatattta gatgggatct ctcatttttc tttgatgcca
     3241 ctcatcttca gcgagtaaat tatatagctc aaaataccag aaatgtccat agttgtgtaa
     3301 gagaacatgt ccttccattc ttgcatgccg taagaccctg tcaatcagaa atcattgcat
     3361 ctgcgacttt caagcagaaa aaacggtatt ttttgttgat ttgtaaagag agtttagatg
     3421 tcctgtttaa agaaaaagag tgtagtgaaa ttttatatat ttatgaaata tttgaaaggc
     3481 atattttttt aattatcaaa tgagactatt cattaaataa atagtatgta aagacatcat
     3541 aatttaagat agtagtttta taagtcaggg tcaacattcc atgtaaatat ttgaccttta
     3601 ttcatatgca gatccacaag tgtgttctgt gtgcacattt gatagcatca ctcactgagt
     3661 ttccttcaga cgtgtcaaat ttcatacctt gatacacact cacagctaaa tagttagata
     3721 accagacatt gttacttgac agcataatcc aaacagcaag gtctaagtta attaactaaa
     3781 tagcaagcaa tttagtttaa aaaggggttg gtgagggctt tcctggtggc gcagtggttg
     3841 agagtctgcc tgccgatgca ggggacacgg gttcgtgccc cggtctggga ggatcccgcg
     3901 tgcggcggag cggctgggcc cgtgagccac ggccgctgag cctgcgcgtc cggagcctgt
     3961 gctccgcaac gggagaggcc acaacagtga gaggcccgcg tgccacaaaa aaaaaaaaaa
     4021 aaaaaagggg ggggttggtg ggttgccaga tctaatattg aagccatact ttatagttgt
     4081 gtggctggtc taagaaagta caaatcttcc ttaggtggtt tgggtagaat attctctttg
     4141 aacattgact gaaatttccg aaaaatcagg acttcctagg aaatgaatta taatttaggc
     4201 agtccaaatt ctttgttcag aaatagtacc tggtttgctt tttttcattt acagacaatt
     4261 gcctcaattc tttcctgcgg aggtagagat agtgtaatgt ggtagaaacg gggtcctttt
     4321 tggtggtggt ggtggaggtg ttatagaact atatttgtcc agcctttctc cctttttaca
     4381 cgagagctgg gcagtatttt tttaaataat gaaaagaggt acttcagcaa tttgaaaaat
     4441 cttttatcag gtaatataca tacgtggtct tgcaagtgac atttacatgg ccaccttgat
     4501 gcttagaaag agattcagtt aaaatttaat gcggcagggc caactccatg gcctctgatt
     4561 aatgttgcaa agggcccttg attctgtgct ttatgcatcc tcagctccct ctctagcaag
     4621 gacagactag ttctttaggc agcttgcttc tgagacagtg tcagccacta tttgagagaa
     4681 caggaatatt gggtttttta agtccatgta tttaaaatcc aagatcaaga agataattct
     4741 atactcccat tattaacata ctggaatctt ttttttttac cattatttta cttaccaata
     4801 tagacattat cgatatcttt aaggctgacc ttcctggcat tgtgtaatga ttgaatgtat
     4861 ctaaattgta ataatttaaa attgacaaac atgtaaaacg aaattatgtt gttaaaagtt
     4921 tcctgaagat agagttttat tatttatttt ctttttgact agtgagagtt tataaataaa
     4981 agtcatggaa aacctttgag cttaataaag tatcttcaaa tta
//
LOCUS       XM_032618426           11414 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X4, mRNA.
ACCESSION   XM_032618426
VERSION     XM_032618426.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11414
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..11414
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 19 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             6891..8621
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X1"
                     /protein_id="XP_032474317.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPALSAGSGSDTGLYELLAALPAQLRPHVDSQEDLTFLWDVFGE
                     KSLHSLVKIHEKLHYYEKQNPTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKP
                     NVKALLSVHDTVALKNYDPVLPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTG
                     AVVVARIMRGGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIP
                     SIKEDTPSKEGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAK
                     HEGDANPRAGLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTN
                     KSMYECKKSDQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISD
                     TQHYGVTVPHTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSID
                     SVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRD
                     EQGAAKPFTEEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDT
                     HWVPVSWLHS"
     misc_feature    6936..7094
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    7131..7265
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    7302..7544
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(7332..7352,7383..7385,7392..7394,7482..7484,
                     7494..7496,7503..7508)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    7584..7766
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(7590..7592,7662..7667)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(7599..7601,7605..7607,7614..7616,7647..7649,
                     7701..7706,7755..7757,7761..7766)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    8040..8579
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 agtacctact agaagtacag aaaaatccca ataattaatg tgggactata cgaataaaaa
       61 taagaggttt tcatcaaccc aagaacattc ccctgcatca tcacataccc cagagtcttt
      121 ggtgttcagc tccggaatgg acgctcacag ccaggcagca ctgggtttgg acgagcctcc
      181 gagactcagg atcaaggtag gcactgtgtc ctaccttgtc ttcatcgcta cacagtggag
      241 tttttccctt taagggtttt cttaatactg gtacagacta tccctcatcc cctagataca
      301 ctctcttact aacgcttcta ctacgtattc aattactcct ttcaactacc agccagtggt
      361 tttgaccctg accatgaggc aagccccgac ctcaacctta cactgtgtta agaacgctgg
      421 ccgtggagcg gatcgcagct ccatcactta ggagccgagg acaagccacg taacctctcg
      481 gtgctgcagt ttcctcatcc ataagaagga ataagaatga taatagggtt atgatgatgg
      541 ttgaattaat cctggggtct acaagccagt ggatgcctgt gaacttgaat gtggaaatta
      601 gttacatctg ggctcgttag tttttcaaag ttatggtacc attaaacgtg tcactggatc
      661 ttattattta atgtgttaag aaaaaagaag tactttgatt atcatataac ttttcattgt
      721 ttgggcaatc atctcagtat gttttgtttc tcttgtgtcc catccctgac aggttccact
      781 agacggccaa gaaaaagtaa agtctccttg aattaataaa catgccaagt acttacagtc
      841 tttctgaaca taataatcat ggcataggtg ttcagtgtta ttattattat ctcatttaat
      901 tctcacagta accactaaga ggtaaatatg gctattatca tcccactgga aggtatgctt
      961 atgagggcag ggattgtttt tctgtgttgt tcattgtgta tccccagaac ctaacatggg
     1021 catggcacgt agtagacatt cgataaatat tggtttaatg aatgtccgga ccccagtttt
     1081 gcagatgagg acaccagggc attgagaggt gaaataacac gtccgtggtc aaccagcacc
     1141 tatgtcatca agccccatcc atgtggctcc agggctggag actgaacttc ctcatctgcc
     1201 gtttcctggt catttcataa ttcttcaagc ggcagtcttt ccccagcata gggcttgtat
     1261 ttgggaaaag cagtgcctag ttttggccga gacttcttag cggaagcaga aggagatgct
     1321 catgcagaac tgggggaccc aagtttcacc tggtcctcac gtgataacat ggcaaaagta
     1381 aagtcccatt aacatgtgag tgttcatggc ttttcccctt ttacacctgc taaagggaat
     1441 tttgtctttc tcagcttagt tgctgggctt ttatggtgct ggatttgggt tcagagaaaa
     1501 tggagaagtg acagcaggga tgtactccag caaggatgga gtttcaccca cgggagagga
     1561 tggtgagtag gaatcaaagg gaagagactg catcaaggag tgacaagagc cagcaggcct
     1621 gggtgccagg gagagcttag agtgacagag agaggtctgg ggactgcctg ctgtgtttgt
     1681 ggaggatgga ggtcagtggt gggcgtggga ggatttttca aagttttgtc acgcaaaact
     1741 gcttgcctcc ctctctctcc ctgctcttga gtcatgagca cttcctttag acgcgtagta
     1801 aaaacgttaa cttctaggcc tctgagctaa tggttagctc aatactactt cttcaggaca
     1861 gggactacat acactgcagc tttcatgtgg tcagtcaacg caaggtctcc actggctttc
     1921 tcctgttcta cttctccttg tcagggtcaa tgctgctagg tggtcccagg tcccggagca
     1981 caggactcct tacatgagtt ggaagattgg ctccttcctt ggctgtgcga ttcatttcat
     2041 cctgtggccc agaagtggcc ccaaatgtat ccagtgtttc tctaaatttc tcagaaaagc
     2101 agggtttttt ttaatctccc atgagtatct gcaaagctaa acacacatat ctacgaaaac
     2161 aagtaatggc ttgcaaacat agtgcagtca aaataaattc ttaaaaaaaa ttctataaag
     2221 aaaatgtaat ctgaagggtt aaggatgaca gttgagggtt ttgactctga catgaggcag
     2281 acgggtttaa tccccagctc tgccaattat taatcatcta aatttgggca attgggaatt
     2341 gcctggtggt ccagtggtta gtacgccatg gtttcactgc caagggcacg ggttcaatcc
     2401 ctggtcgggg aactaagatc tcacaagttg catatggcgt gaccaaaaaa aaggggacaa
     2461 ctaacataat tacactaacc tcacttttct catctgtaaa atagagagaa taatatatat
     2521 cccatggtgt ttactgtgag gactgaatgc cagaatccag gtaagatatt taacaggtgt
     2581 tcactgtcac tcttacttaa cagggagcaa tttagatgta cagagcatga aaaggtcttt
     2641 ctcatttggt gtctatttac agatctgtaa ttaacctctt tctggttttc caaaacagac
     2701 tgccccaaag atatattctg gtctctctct tttgcaggat agaaaactgc ttacatatgt
     2761 gaaatgccag ctcttctttc tggcttctag cagcatcatt aaggtttgaa accttccaga
     2821 tccaagttcg ggtgaggcat agatctggga ctggtgagct tcctgggtgc cctgtgggaa
     2881 ggaagcttct tgatcagagt gtttcacaat gggctgtggg ccctgagggg atcccagggt
     2941 aggcctcttc ctcccaggat gctgagctca gggagagccc tgttttccca agatcacttc
     3001 cggttacagt gagggggcga gctgcatcac gggcctttcc cagggccttc atctgcaaca
     3061 aaccactgta aaacacacac acacacacac acacacacac acacacaccc acccaccaaa
     3121 agacacatta gaaattgaac atgtggaaat agatgatttg aaaagaaatg aatagaaatg
     3181 aaataatcat ttaaaatttt taattttaaa tctttgtgaa acagagattt ggcactcacc
     3241 ctgaatatta agagcatgta aggcaaatgg ggtatggaaa gaatatgcag tcatttcagc
     3301 aggaccagct ccactatcct taggtatttg gtaacttcaa tagtctattt ttttaagtag
     3361 gctgattgga agggtcctct ttctcactag tattgccaaa aataaaaaat aatttcaatg
     3421 attttacttt gaaacagtct tttttcccct accagattaa ttttccttaa ataccatttt
     3481 ccttacaagc taaaaagctt tagcaattcc tgctggcttt cagacctgat ccaactttct
     3541 cagcctggaa atctaggtca tcccatcgtt gtccgaccct tccctacaga aatcttccat
     3601 cccagctggt atcctcattc ttctccaaac atacatcgct cgttgctcct tcaaacagtt
     3661 taaccatgct gaaccccaaa ggaagtccct cctgcaaggc atttctctcc ctcaactcat
     3721 ttcttttcct tcaattcatg ttcatctctc agatttttcc cctccagaga cactgactga
     3781 ttcctttacg tggagaagtc ccaggtgtga ctggaggaag taaacaaatg atccccacag
     3841 tgccttcaac agagcagttt cccttctgga ggcagcgaag ggcaccagaa ggttcatttg
     3901 tatggataaa tgtgtatttt tatgaatgga attttcaata tttaaatacc ccctgtgaat
     3961 ttatgtcctt atttacttca gtgtagccaa acataactca aaattcagct aatttaagac
     4021 acagtctcat tctgaataaa taaatgaagc aagcaaacct ttttcaagga gaaaatgtct
     4081 ttgaaaggga tttctaaagc ttcattacat tacatgcaga agttggttct ctggtgaata
     4141 aacagaagtc atagcctgct tcttgcagta caattttcgc agaaaaaaca aacacacact
     4201 gcctactggt ggtgattatt cggatttggg caggtaaaac accgttccgt gtcccagcgc
     4261 acagagctgg agtactgtgt atctgagagc gcttccggga gaacagtcct acggcttttc
     4321 atcagagaat cccagcctgc tctggtgagc cgtgcaatgt ttttgtgtag ggaaggagga
     4381 accaggaatc cagggagacc tcgtggtctg tgaggtccca tgcacagtgc tttgaggtgt
     4441 tttcccactt aaagatcgta acacctcagc accacaactg ctgttacccc actgttacgg
     4501 ttaaaggcat tgcaattaca ggatcagtgc aagagttctt tatttcaatc caaggtaaac
     4561 aaagtaacga ttacctgtga cagttggaat gcccactctg ttgggagaat catatacaag
     4621 gaggcatgaa agtgagctca agcttgccaa gctctaaatc aatgacactt gctcgtagca
     4681 gacggtggcg cccagagtga cagcacaggg tcgcgtagct tgggcagcac acaggcaacc
     4741 gtggttatgt cataggtatc acacgtttgt agttttatcg ttcctggcag gtggcagtga
     4801 agtgtcttgt tctaccaaaa gcagcatatt acagcaaatt tccagcaaac ggaagtgaag
     4861 tatcttgaag agtggtatct tttcctaatt tctgccaagg cgccagccac gtggcctggc
     4921 agaggctggg gggcggcagc ccttcagtcg ttgaccatcc caggcctctc ctagggggtc
     4981 tccgttgcac tggtctccct gcctctgcac caatgtggca aaacttccat ggtttccatc
     5041 accgtgaacc tttgcagact tgccttaaaa tcgtttttta aaaagttaag gaattgtatt
     5101 tagaagtcag gagagttggc gtgagtcctt gggggctaaa ccaatttctt ttagaaatca
     5161 gtttttatga atcttgattt cataaaatgt agtaatcaac agaagagctg ttctagcatg
     5221 taaaatggca aatgcaaatg acagggatgc tcctttgtcc tttgttttgg gacatctggc
     5281 cttgaagttt taggatattg actttatcag ctaagcctct taacttacag catcttactc
     5341 agtatttcca gaaaggacct gcctgggtca cagcttcccc ttttatgaac tggtcgcctg
     5401 gacacaggca tggggacagc agccgtgatt ctagcaccaa aacctgggca gggtgaagac
     5461 agccaggcac aggcaatggg ctcttctctt tggggactga agtgtgggac cgagggacac
     5521 agtgcctgag ggatgacaga gctgagtcgc actgaatgca gtgccacagt tgagagaggc
     5581 tgctgcggac ctgactactt cttcccaacc ttgggtgtcc agatcttcca ctgagctctt
     5641 gagctacttc agtatccttc gtatatacat atatacacat gcgcgtacat atatataatc
     5701 tcttaaaagt caacttcatt tttagagcag ttttaccttt attgaaaaat aacaaagata
     5761 gtacagagag ttctcatata ccacacacct agttttccct ttcaggaacc tagcacattc
     5821 atcacaatta atgaaccaat atcgatacat tgtgattaac caaagcccat attttatcca
     5881 gctttcctta gttttatacg gcgttgcttc tctcttccag gatcccatct aagctaccat
     5941 attacgttta cttgttacgt ctccttaacc tgctcctggc tgtgacgggc tcggacctgt
     6001 cttgtttttg aggaccttga cagttttgag tagtactggt taactatttt gtagcatatg
     6061 ctcctctgtt aggatttgtc tgctgtttct cccatgctta gacggaggtt cggggttctg
     6121 ggaaggaaga ccacacacac tgtcaacatg acttgtcatc actcttgaca ttggccttga
     6181 tcacctgcct gaggtggtat cagtcaggtc tgtaatctca aatgtattat tatttagtgt
     6241 gtctctctct atcttttttg cttacatggt ttcttttttt taatcttaga atttaaactc
     6301 agatctcaga gacttatcta ttaagttcct ttgtttcctg ctcatttacc agggagaggg
     6361 aatttgggga taaaggtgta gtcatgagaa aactacatga gttaagaaaa tagaggcaac
     6421 aaaacaagag tgccgtctcc taaagcgccg tcttagttgg cagtgcaacg tctgtgtgtg
     6481 cacacccgca gattgtttct tctgccgcgg caccaaggct ttccattctg tgatggctcc
     6541 tccttacaca tttcttaatc ttctgtgtac aggaaggagt cactcacttt ccaagtggct
     6601 tgatgaggaa gcttctcatt tccaggtcag cactagttaa cgaaggatgg tggatcgtag
     6661 gctctgggga acaaaagtag aacaagagtg attttgcttg tggctctctc ccttgtgagc
     6721 tcaacaagaa acggactgca ggagacatag atctgggtag acagcgtggc tgcaggcctc
     6781 agggttggca tccctgccgc ctttgaacgg agcgtgttgg cacttcaggg cccagctcag
     6841 cctgcatcct gcatcccgca tcgcacatcc tgcatcccgc atcctgcatc atgcccgcgc
     6901 tgtccgcagg ctcggggagc gacacaggtc tgtatgagct gctggcggct ctgccagccc
     6961 agctgcggcc acatgtggac agccaggaag acctgacctt cctctgggat gtgtttggtg
     7021 aaaaaagcct gcattcgcta gtcaagattc acgagaagct tcactactac gagaagcaga
     7081 atcccacgcc catcctccag ggtgcggcag ccttagctgg tgacctggcg gaggagcttc
     7141 agagcaagcc gttaaacagc gagatcagag agctgttgaa gctactgtca aaacccaatg
     7201 tgaaggcttt gctctctgtg cacgataccg tggctctgaa gaactatgac cccgtgttgc
     7261 ctcctatgcc tgatgacatt gatgaggagg aagactccgt gaaaatcatc cgtctggtca
     7321 agaaccgaga gccgctggga gctaccatta agaaagatga gcccaccggg gccgtggttg
     7381 tggccagaat catgagagga ggagctgcag acagaagtgg tcttattcac gttggtgatg
     7441 aacttaggga agtgaatggg atacctgtcg aggataaaag ccctgaggaa atcattcaga
     7501 tcttggctca gtctcagggc gcaatcacat tcaagattat acccagcatc aaggaggaca
     7561 caccatcaaa ggagggcaag atgtttatca aagccctctt tgactatgac cctaatgagg
     7621 ataaagcaat tccatgtaag gaagctgggc tttctttcaa aaagggagat attcttcaga
     7681 ttatgagcca ggatgatgca acatggtggc aggcgaagca cgaaggagat gccaatccca
     7741 gagcaggctt gattccctca aagcatttcc aggaaaggag attggctctg agacgaccag
     7801 aaatactagt ccagcccctg caagtttcca acaggaaatc atctggtttt agaagaagtt
     7861 tccgtcttag tagaaaagat aagaaaacaa ataaatccat gtatgagtgc aagaagagtg
     7921 accagtacga cacagccgat gtgcccactt atgaggaggt gacaccctat cgacggcaga
     7981 tgaatgagaa ctacagactc gttgtcttgg ttggtcctgt aggggtaggt ttgaacgaac
     8041 tgaaacgaaa gctgctgatc agtgacacac agcactacgg cgtgacggtg ccccacacca
     8101 ccagaccaag aagaagccag gagagtgatg gtgttgaata tgtcttcgtt tccaagcact
     8161 tgtttgagac cgatgtacaa aataacaagt tcattgaata tggtgaatat aaaaacaact
     8221 attacggcac aagtatagac tcagttcggt ctgtcctagc taaaaacaaa gtttgtttgt
     8281 tggacgttca gcctcatacg gtgaagcact taaggacact agaatttaag ccctatgtga
     8341 tatttataaa gcctccgtca atagagcgtt tgagggagac aagaaaaaat gcaaagatta
     8401 tttcaagcag agatgagcaa ggtgccgcca agccctttac ggaggaagac tttcaagaaa
     8461 tgattaaatc tgcccagata atggaaagtc aatatggtca tctttttgac aaaactatag
     8521 taaatgatga tctcaccgtg gccttcagtg agcttaaaac aacttttgac aaactggaga
     8581 cagataccca ctgggttcca gtgagctggt tgcattcgta actaagggaa atttccataa
     8641 ttatcttttc tgtagagtgc atggttaaat cagttgccat tttggtggta ggtttaatct
     8701 atatcactgt taagatgtgc agtcttggtt aaaattgatg tgttggtctt gtttgtgtct
     8761 ttttacagcc ttatttcaag cacagtgttt gagtttaagg tccaaagtca aaatctgcac
     8821 agtaccgtat tctggttgtc ttgactgtgt agctctatct ccaaaatggg gttgaacttt
     8881 ttagagagac acagctggag gatgtacacg agagttcagt gcttcagctg gtctccgacg
     8941 tcatcactgc cttggagttt gcatgtcagc cgctgaatac gttcagttca cagtcttcag
     9001 gagccagaca tcatcataga ggcgcctggg ctggcagtaa ggccgagtct tcttactgtt
     9061 ctgcaagtgc aaactttttc ttacgtagac acaacatatt cacagttaca gtttgagaag
     9121 gccttatgag tgcatatatc agtgactcaa caaatgttta ataagggaag atgggctttt
     9181 aaaaattacc atttatgaaa ctaaaaacct ttctttatgg cttaagaatg gtgatatcct
     9241 ggggcaagta agattacaaa ggacattttt atttgtaaat cctcagacaa catttctgga
     9301 ctcaccagaa attctggagc cagttatttg gctttgggtt ttcccaataa attataagaa
     9361 tgattcctat tctaaaagta ggttttactt gttactgcta cagttaagga aaatgtgatc
     9421 atttttcaaa tgtgtgcagt tgatgacaat atatttaaat tgcactgtaa gatatatttt
     9481 agaaaacttt tcatgtaatg ttatttcttc gtcatcaaaa tatttaacac tggccagata
     9541 ccatcctagt cttgccattt ttaaagaagt ttaagaaaga ctcttttgtt gtaaatattt
     9601 agatgggatc tctcattttt ctttgatgcc actcatcttc agcgagtaaa ttatatagct
     9661 caaaatacca gaaatgtcca tagttgtgta agagaacatg tccttccatt cttgcatgcc
     9721 gtaagaccct gtcaatcaga aatcattgca tctgcgactt tcaagcagaa aaaacggtat
     9781 tttttgttga tttgtaaaga gagtttagat gtcctgttta aagaaaaaga gtgtagtgaa
     9841 attttatata tttatgaaat atttgaaagg catatttttt taattatcaa atgagactat
     9901 tcattaaata aatagtatgt aaagacatca taatttaaga tagtagtttt ataagtcagg
     9961 gtcaacattc catgtaaata tttgaccttt attcatatgc agatccacaa gtgtgttctg
    10021 tgtgcacatt tgatagcatc actcactgag tttccttcag acgtgtcaaa tttcatacct
    10081 tgatacacac tcacagctaa atagttagat aaccagacat tgttacttga cagcataatc
    10141 caaacagcaa ggtctaagtt aattaactaa atagcaagca atttagttta aaaaggggtt
    10201 ggtgagggct ttcctggtgg cgcagtggtt gagagtctgc ctgccgatgc aggggacacg
    10261 ggttcgtgcc ccggtctggg aggatcccgc gtgcggcgga gcggctgggc ccgtgagcca
    10321 cggccgctga gcctgcgcgt ccggagcctg tgctccgcaa cgggagaggc cacaacagtg
    10381 agaggcccgc gtgccacaaa aaaaaaaaaa aaaaaaaggg gggggttggt gggttgccag
    10441 atctaatatt gaagccatac tttatagttg tgtggctggt ctaagaaagt acaaatcttc
    10501 cttaggtggt ttgggtagaa tattctcttt gaacattgac tgaaatttcc gaaaaatcag
    10561 gacttcctag gaaatgaatt ataatttagg cagtccaaat tctttgttca gaaatagtac
    10621 ctggtttgct ttttttcatt tacagacaat tgcctcaatt ctttcctgcg gaggtagaga
    10681 tagtgtaatg tggtagaaac ggggtccttt ttggtggtgg tggtggaggt gttatagaac
    10741 tatatttgtc cagcctttct ccctttttac acgagagctg ggcagtattt ttttaaataa
    10801 tgaaaagagg tacttcagca atttgaaaaa tcttttatca ggtaatatac atacgtggtc
    10861 ttgcaagtga catttacatg gccaccttga tgcttagaaa gagattcagt taaaatttaa
    10921 tgcggcaggg ccaactccat ggcctctgat taatgttgca aagggccctt gattctgtgc
    10981 tttatgcatc ctcagctccc tctctagcaa ggacagacta gttctttagg cagcttgctt
    11041 ctgagacagt gtcagccact atttgagaga acaggaatat tgggtttttt aagtccatgt
    11101 atttaaaatc caagatcaag aagataattc tatactccca ttattaacat actggaatct
    11161 ttttttttta ccattatttt acttaccaat atagacatta tcgatatctt taaggctgac
    11221 cttcctggca ttgtgtaatg attgaatgta tctaaattgt aataatttaa aattgacaaa
    11281 catgtaaaac gaaattatgt tgttaaaagt ttcctgaaga tagagtttta ttatttattt
    11341 tctttttgac tagtgagagt ttataaataa aagtcatgga aaacctttga gcttaataaa
    11401 gtatcttcaa atta
//
LOCUS       XM_032618434            4892 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X5, mRNA.
ACCESSION   XM_032618434
VERSION     XM_032618434.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4892
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4892
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 19 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             369..2099
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X1"
                     /protein_id="XP_032474325.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPALSAGSGSDTGLYELLAALPAQLRPHVDSQEDLTFLWDVFGE
                     KSLHSLVKIHEKLHYYEKQNPTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKP
                     NVKALLSVHDTVALKNYDPVLPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTG
                     AVVVARIMRGGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIP
                     SIKEDTPSKEGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAK
                     HEGDANPRAGLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTN
                     KSMYECKKSDQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISD
                     TQHYGVTVPHTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSID
                     SVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRD
                     EQGAAKPFTEEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDT
                     HWVPVSWLHS"
     misc_feature    414..572
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    609..743
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    780..1022
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(810..830,861..863,870..872,960..962,972..974,
                     981..986)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    1062..1244
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(1068..1070,1140..1145)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(1077..1079,1083..1085,1092..1094,1125..1127,
                     1179..1184,1233..1235,1239..1244)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1518..2057
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 tcaattgtgg tgaacagttg agggtttaga gggaaaaaca caaccaggaa gaagcgttga
       61 ttaagccatg aatctagagg tgcattttag tttggctgaa gatgtctggt tattcacatc
      121 gcgggtgttt ttctgactta aacgctcaag gtcaagctac gtgggtgaga acatcgctca
      181 ttccttagtc ggcctgagtg tcagagaaac ggactgcagg agacatagat ctgggtagac
      241 agcgtggctg caggcctcag ggttggcatc cctgccgcct ttgaacggag cgtgttggca
      301 cttcagggcc cagctcagcc tgcatcctgc atcccgcatc gcacatcctg catcccgcat
      361 cctgcatcat gcccgcgctg tccgcaggct cggggagcga cacaggtctg tatgagctgc
      421 tggcggctct gccagcccag ctgcggccac atgtggacag ccaggaagac ctgaccttcc
      481 tctgggatgt gtttggtgaa aaaagcctgc attcgctagt caagattcac gagaagcttc
      541 actactacga gaagcagaat cccacgccca tcctccaggg tgcggcagcc ttagctggtg
      601 acctggcgga ggagcttcag agcaagccgt taaacagcga gatcagagag ctgttgaagc
      661 tactgtcaaa acccaatgtg aaggctttgc tctctgtgca cgataccgtg gctctgaaga
      721 actatgaccc cgtgttgcct cctatgcctg atgacattga tgaggaggaa gactccgtga
      781 aaatcatccg tctggtcaag aaccgagagc cgctgggagc taccattaag aaagatgagc
      841 ccaccggggc cgtggttgtg gccagaatca tgagaggagg agctgcagac agaagtggtc
      901 ttattcacgt tggtgatgaa cttagggaag tgaatgggat acctgtcgag gataaaagcc
      961 ctgaggaaat cattcagatc ttggctcagt ctcagggcgc aatcacattc aagattatac
     1021 ccagcatcaa ggaggacaca ccatcaaagg agggcaagat gtttatcaaa gccctctttg
     1081 actatgaccc taatgaggat aaagcaattc catgtaagga agctgggctt tctttcaaaa
     1141 agggagatat tcttcagatt atgagccagg atgatgcaac atggtggcag gcgaagcacg
     1201 aaggagatgc caatcccaga gcaggcttga ttccctcaaa gcatttccag gaaaggagat
     1261 tggctctgag acgaccagaa atactagtcc agcccctgca agtttccaac aggaaatcat
     1321 ctggttttag aagaagtttc cgtcttagta gaaaagataa gaaaacaaat aaatccatgt
     1381 atgagtgcaa gaagagtgac cagtacgaca cagccgatgt gcccacttat gaggaggtga
     1441 caccctatcg acggcagatg aatgagaact acagactcgt tgtcttggtt ggtcctgtag
     1501 gggtaggttt gaacgaactg aaacgaaagc tgctgatcag tgacacacag cactacggcg
     1561 tgacggtgcc ccacaccacc agaccaagaa gaagccagga gagtgatggt gttgaatatg
     1621 tcttcgtttc caagcacttg tttgagaccg atgtacaaaa taacaagttc attgaatatg
     1681 gtgaatataa aaacaactat tacggcacaa gtatagactc agttcggtct gtcctagcta
     1741 aaaacaaagt ttgtttgttg gacgttcagc ctcatacggt gaagcactta aggacactag
     1801 aatttaagcc ctatgtgata tttataaagc ctccgtcaat agagcgtttg agggagacaa
     1861 gaaaaaatgc aaagattatt tcaagcagag atgagcaagg tgccgccaag ccctttacgg
     1921 aggaagactt tcaagaaatg attaaatctg cccagataat ggaaagtcaa tatggtcatc
     1981 tttttgacaa aactatagta aatgatgatc tcaccgtggc cttcagtgag cttaaaacaa
     2041 cttttgacaa actggagaca gatacccact gggttccagt gagctggttg cattcgtaac
     2101 taagggaaat ttccataatt atcttttctg tagagtgcat ggttaaatca gttgccattt
     2161 tggtggtagg tttaatctat atcactgtta agatgtgcag tcttggttaa aattgatgtg
     2221 ttggtcttgt ttgtgtcttt ttacagcctt atttcaagca cagtgtttga gtttaaggtc
     2281 caaagtcaaa atctgcacag taccgtattc tggttgtctt gactgtgtag ctctatctcc
     2341 aaaatggggt tgaacttttt agagagacac agctggagga tgtacacgag agttcagtgc
     2401 ttcagctggt ctccgacgtc atcactgcct tggagtttgc atgtcagccg ctgaatacgt
     2461 tcagttcaca gtcttcagga gccagacatc atcatagagg cgcctgggct ggcagtaagg
     2521 ccgagtcttc ttactgttct gcaagtgcaa actttttctt acgtagacac aacatattca
     2581 cagttacagt ttgagaaggc cttatgagtg catatatcag tgactcaaca aatgtttaat
     2641 aagggaagat gggcttttaa aaattaccat ttatgaaact aaaaaccttt ctttatggct
     2701 taagaatggt gatatcctgg ggcaagtaag attacaaagg acatttttat ttgtaaatcc
     2761 tcagacaaca tttctggact caccagaaat tctggagcca gttatttggc tttgggtttt
     2821 cccaataaat tataagaatg attcctattc taaaagtagg ttttacttgt tactgctaca
     2881 gttaaggaaa atgtgatcat ttttcaaatg tgtgcagttg atgacaatat atttaaattg
     2941 cactgtaaga tatattttag aaaacttttc atgtaatgtt atttcttcgt catcaaaata
     3001 tttaacactg gccagatacc atcctagtct tgccattttt aaagaagttt aagaaagact
     3061 cttttgttgt aaatatttag atgggatctc tcatttttct ttgatgccac tcatcttcag
     3121 cgagtaaatt atatagctca aaataccaga aatgtccata gttgtgtaag agaacatgtc
     3181 cttccattct tgcatgccgt aagaccctgt caatcagaaa tcattgcatc tgcgactttc
     3241 aagcagaaaa aacggtattt tttgttgatt tgtaaagaga gtttagatgt cctgtttaaa
     3301 gaaaaagagt gtagtgaaat tttatatatt tatgaaatat ttgaaaggca tattttttta
     3361 attatcaaat gagactattc attaaataaa tagtatgtaa agacatcata atttaagata
     3421 gtagttttat aagtcagggt caacattcca tgtaaatatt tgacctttat tcatatgcag
     3481 atccacaagt gtgttctgtg tgcacatttg atagcatcac tcactgagtt tccttcagac
     3541 gtgtcaaatt tcataccttg atacacactc acagctaaat agttagataa ccagacattg
     3601 ttacttgaca gcataatcca aacagcaagg tctaagttaa ttaactaaat agcaagcaat
     3661 ttagtttaaa aaggggttgg tgagggcttt cctggtggcg cagtggttga gagtctgcct
     3721 gccgatgcag gggacacggg ttcgtgcccc ggtctgggag gatcccgcgt gcggcggagc
     3781 ggctgggccc gtgagccacg gccgctgagc ctgcgcgtcc ggagcctgtg ctccgcaacg
     3841 ggagaggcca caacagtgag aggcccgcgt gccacaaaaa aaaaaaaaaa aaaaaggggg
     3901 gggttggtgg gttgccagat ctaatattga agccatactt tatagttgtg tggctggtct
     3961 aagaaagtac aaatcttcct taggtggttt gggtagaata ttctctttga acattgactg
     4021 aaatttccga aaaatcagga cttcctagga aatgaattat aatttaggca gtccaaattc
     4081 tttgttcaga aatagtacct ggtttgcttt ttttcattta cagacaattg cctcaattct
     4141 ttcctgcgga ggtagagata gtgtaatgtg gtagaaacgg ggtccttttt ggtggtggtg
     4201 gtggaggtgt tatagaacta tatttgtcca gcctttctcc ctttttacac gagagctggg
     4261 cagtattttt ttaaataatg aaaagaggta cttcagcaat ttgaaaaatc ttttatcagg
     4321 taatatacat acgtggtctt gcaagtgaca tttacatggc caccttgatg cttagaaaga
     4381 gattcagtta aaatttaatg cggcagggcc aactccatgg cctctgatta atgttgcaaa
     4441 gggcccttga ttctgtgctt tatgcatcct cagctccctc tctagcaagg acagactagt
     4501 tctttaggca gcttgcttct gagacagtgt cagccactat ttgagagaac aggaatattg
     4561 ggttttttaa gtccatgtat ttaaaatcca agatcaagaa gataattcta tactcccatt
     4621 attaacatac tggaatcttt tttttttacc attattttac ttaccaatat agacattatc
     4681 gatatcttta aggctgacct tcctggcatt gtgtaatgat tgaatgtatc taaattgtaa
     4741 taatttaaaa ttgacaaaca tgtaaaacga aattatgttg ttaaaagttt cctgaagata
     4801 gagttttatt atttattttc tttttgacta gtgagagttt ataaataaaa gtcatggaaa
     4861 acctttgagc ttaataaagt atcttcaaat ta
//
LOCUS       XM_032618441            4785 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X6, mRNA.
ACCESSION   XM_032618441
VERSION     XM_032618441.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4785
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4785
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 19 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             262..1992
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X1"
                     /protein_id="XP_032474332.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPALSAGSGSDTGLYELLAALPAQLRPHVDSQEDLTFLWDVFGE
                     KSLHSLVKIHEKLHYYEKQNPTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKP
                     NVKALLSVHDTVALKNYDPVLPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTG
                     AVVVARIMRGGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIP
                     SIKEDTPSKEGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAK
                     HEGDANPRAGLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTN
                     KSMYECKKSDQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISD
                     TQHYGVTVPHTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSID
                     SVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRD
                     EQGAAKPFTEEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDT
                     HWVPVSWLHS"
     misc_feature    307..465
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    502..636
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    673..915
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(703..723,754..756,763..765,853..855,865..867,
                     874..879)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    955..1137
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(961..963,1033..1038)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(970..972,976..978,985..987,1018..1020,1072..1077,
                     1126..1128,1132..1137)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1411..1950
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 ctttggatgt cattaaagta gatgacgtca ggcttgcagt ggtgatgccg atctaccaaa
       61 atcagtcagt aactggggaa atccctgtag cgccagcaga aacggactgc aggagacata
      121 gatctgggta gacagcgtgg ctgcaggcct cagggttggc atccctgccg cctttgaacg
      181 gagcgtgttg gcacttcagg gcccagctca gcctgcatcc tgcatcccgc atcgcacatc
      241 ctgcatcccg catcctgcat catgcccgcg ctgtccgcag gctcggggag cgacacaggt
      301 ctgtatgagc tgctggcggc tctgccagcc cagctgcggc cacatgtgga cagccaggaa
      361 gacctgacct tcctctggga tgtgtttggt gaaaaaagcc tgcattcgct agtcaagatt
      421 cacgagaagc ttcactacta cgagaagcag aatcccacgc ccatcctcca gggtgcggca
      481 gccttagctg gtgacctggc ggaggagctt cagagcaagc cgttaaacag cgagatcaga
      541 gagctgttga agctactgtc aaaacccaat gtgaaggctt tgctctctgt gcacgatacc
      601 gtggctctga agaactatga ccccgtgttg cctcctatgc ctgatgacat tgatgaggag
      661 gaagactccg tgaaaatcat ccgtctggtc aagaaccgag agccgctggg agctaccatt
      721 aagaaagatg agcccaccgg ggccgtggtt gtggccagaa tcatgagagg aggagctgca
      781 gacagaagtg gtcttattca cgttggtgat gaacttaggg aagtgaatgg gatacctgtc
      841 gaggataaaa gccctgagga aatcattcag atcttggctc agtctcaggg cgcaatcaca
      901 ttcaagatta tacccagcat caaggaggac acaccatcaa aggagggcaa gatgtttatc
      961 aaagccctct ttgactatga ccctaatgag gataaagcaa ttccatgtaa ggaagctggg
     1021 ctttctttca aaaagggaga tattcttcag attatgagcc aggatgatgc aacatggtgg
     1081 caggcgaagc acgaaggaga tgccaatccc agagcaggct tgattccctc aaagcatttc
     1141 caggaaagga gattggctct gagacgacca gaaatactag tccagcccct gcaagtttcc
     1201 aacaggaaat catctggttt tagaagaagt ttccgtctta gtagaaaaga taagaaaaca
     1261 aataaatcca tgtatgagtg caagaagagt gaccagtacg acacagccga tgtgcccact
     1321 tatgaggagg tgacacccta tcgacggcag atgaatgaga actacagact cgttgtcttg
     1381 gttggtcctg taggggtagg tttgaacgaa ctgaaacgaa agctgctgat cagtgacaca
     1441 cagcactacg gcgtgacggt gccccacacc accagaccaa gaagaagcca ggagagtgat
     1501 ggtgttgaat atgtcttcgt ttccaagcac ttgtttgaga ccgatgtaca aaataacaag
     1561 ttcattgaat atggtgaata taaaaacaac tattacggca caagtataga ctcagttcgg
     1621 tctgtcctag ctaaaaacaa agtttgtttg ttggacgttc agcctcatac ggtgaagcac
     1681 ttaaggacac tagaatttaa gccctatgtg atatttataa agcctccgtc aatagagcgt
     1741 ttgagggaga caagaaaaaa tgcaaagatt atttcaagca gagatgagca aggtgccgcc
     1801 aagcccttta cggaggaaga ctttcaagaa atgattaaat ctgcccagat aatggaaagt
     1861 caatatggtc atctttttga caaaactata gtaaatgatg atctcaccgt ggccttcagt
     1921 gagcttaaaa caacttttga caaactggag acagataccc actgggttcc agtgagctgg
     1981 ttgcattcgt aactaaggga aatttccata attatctttt ctgtagagtg catggttaaa
     2041 tcagttgcca ttttggtggt aggtttaatc tatatcactg ttaagatgtg cagtcttggt
     2101 taaaattgat gtgttggtct tgtttgtgtc tttttacagc cttatttcaa gcacagtgtt
     2161 tgagtttaag gtccaaagtc aaaatctgca cagtaccgta ttctggttgt cttgactgtg
     2221 tagctctatc tccaaaatgg ggttgaactt tttagagaga cacagctgga ggatgtacac
     2281 gagagttcag tgcttcagct ggtctccgac gtcatcactg ccttggagtt tgcatgtcag
     2341 ccgctgaata cgttcagttc acagtcttca ggagccagac atcatcatag aggcgcctgg
     2401 gctggcagta aggccgagtc ttcttactgt tctgcaagtg caaacttttt cttacgtaga
     2461 cacaacatat tcacagttac agtttgagaa ggccttatga gtgcatatat cagtgactca
     2521 acaaatgttt aataagggaa gatgggcttt taaaaattac catttatgaa actaaaaacc
     2581 tttctttatg gcttaagaat ggtgatatcc tggggcaagt aagattacaa aggacatttt
     2641 tatttgtaaa tcctcagaca acatttctgg actcaccaga aattctggag ccagttattt
     2701 ggctttgggt tttcccaata aattataaga atgattccta ttctaaaagt aggttttact
     2761 tgttactgct acagttaagg aaaatgtgat catttttcaa atgtgtgcag ttgatgacaa
     2821 tatatttaaa ttgcactgta agatatattt tagaaaactt ttcatgtaat gttatttctt
     2881 cgtcatcaaa atatttaaca ctggccagat accatcctag tcttgccatt tttaaagaag
     2941 tttaagaaag actcttttgt tgtaaatatt tagatgggat ctctcatttt tctttgatgc
     3001 cactcatctt cagcgagtaa attatatagc tcaaaatacc agaaatgtcc atagttgtgt
     3061 aagagaacat gtccttccat tcttgcatgc cgtaagaccc tgtcaatcag aaatcattgc
     3121 atctgcgact ttcaagcaga aaaaacggta ttttttgttg atttgtaaag agagtttaga
     3181 tgtcctgttt aaagaaaaag agtgtagtga aattttatat atttatgaaa tatttgaaag
     3241 gcatattttt ttaattatca aatgagacta ttcattaaat aaatagtatg taaagacatc
     3301 ataatttaag atagtagttt tataagtcag ggtcaacatt ccatgtaaat atttgacctt
     3361 tattcatatg cagatccaca agtgtgttct gtgtgcacat ttgatagcat cactcactga
     3421 gtttccttca gacgtgtcaa atttcatacc ttgatacaca ctcacagcta aatagttaga
     3481 taaccagaca ttgttacttg acagcataat ccaaacagca aggtctaagt taattaacta
     3541 aatagcaagc aatttagttt aaaaaggggt tggtgagggc tttcctggtg gcgcagtggt
     3601 tgagagtctg cctgccgatg caggggacac gggttcgtgc cccggtctgg gaggatcccg
     3661 cgtgcggcgg agcggctggg cccgtgagcc acggccgctg agcctgcgcg tccggagcct
     3721 gtgctccgca acgggagagg ccacaacagt gagaggcccg cgtgccacaa aaaaaaaaaa
     3781 aaaaaaaagg ggggggttgg tgggttgcca gatctaatat tgaagccata ctttatagtt
     3841 gtgtggctgg tctaagaaag tacaaatctt ccttaggtgg tttgggtaga atattctctt
     3901 tgaacattga ctgaaatttc cgaaaaatca ggacttccta ggaaatgaat tataatttag
     3961 gcagtccaaa ttctttgttc agaaatagta cctggtttgc tttttttcat ttacagacaa
     4021 ttgcctcaat tctttcctgc ggaggtagag atagtgtaat gtggtagaaa cggggtcctt
     4081 tttggtggtg gtggtggagg tgttatagaa ctatatttgt ccagcctttc tcccttttta
     4141 cacgagagct gggcagtatt tttttaaata atgaaaagag gtacttcagc aatttgaaaa
     4201 atcttttatc aggtaatata catacgtggt cttgcaagtg acatttacat ggccaccttg
     4261 atgcttagaa agagattcag ttaaaattta atgcggcagg gccaactcca tggcctctga
     4321 ttaatgttgc aaagggccct tgattctgtg ctttatgcat cctcagctcc ctctctagca
     4381 aggacagact agttctttag gcagcttgct tctgagacag tgtcagccac tatttgagag
     4441 aacaggaata ttgggttttt taagtccatg tatttaaaat ccaagatcaa gaagataatt
     4501 ctatactccc attattaaca tactggaatc tttttttttt accattattt tacttaccaa
     4561 tatagacatt atcgatatct ttaaggctga ccttcctggc attgtgtaat gattgaatgt
     4621 atctaaattg taataattta aaattgacaa acatgtaaaa cgaaattatg ttgttaaaag
     4681 tttcctgaag atagagtttt attatttatt ttctttttga ctagtgagag tttataaata
     4741 aaagtcatgg aaaacctttg agcttaataa agtatcttca aatta
//
LOCUS       XM_032618449            4863 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X7, mRNA.
ACCESSION   XM_032618449
VERSION     XM_032618449.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4863
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4863
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 19 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             340..2070
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X1"
                     /protein_id="XP_032474340.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPALSAGSGSDTGLYELLAALPAQLRPHVDSQEDLTFLWDVFGE
                     KSLHSLVKIHEKLHYYEKQNPTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKP
                     NVKALLSVHDTVALKNYDPVLPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTG
                     AVVVARIMRGGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIP
                     SIKEDTPSKEGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAK
                     HEGDANPRAGLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTN
                     KSMYECKKSDQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISD
                     TQHYGVTVPHTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSID
                     SVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRD
                     EQGAAKPFTEEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDT
                     HWVPVSWLHS"
     misc_feature    385..543
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    580..714
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    751..993
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(781..801,832..834,841..843,931..933,943..945,
                     952..957)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    1033..1215
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(1039..1041,1111..1116)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(1048..1050,1054..1056,1063..1065,1096..1098,
                     1150..1155,1204..1206,1210..1215)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1489..2028
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 gcagcgctgt gcagaggccc cgtggtaaga agctgaggcc ttctgccaac agccacggga
       61 gggagctcgg ccacaaaccc caggtccgta ccgccttcag atggctgcag cccaaccccg
      121 gcccacccaa catcttgatt acagcctcgt gagagaccct cagctgggaa ctcccagaaa
      181 cggactgcag gagacataga tctgggtaga cagcgtggct gcaggcctca gggttggcat
      241 ccctgccgcc tttgaacgga gcgtgttggc acttcagggc ccagctcagc ctgcatcctg
      301 catcccgcat cgcacatcct gcatcccgca tcctgcatca tgcccgcgct gtccgcaggc
      361 tcggggagcg acacaggtct gtatgagctg ctggcggctc tgccagccca gctgcggcca
      421 catgtggaca gccaggaaga cctgaccttc ctctgggatg tgtttggtga aaaaagcctg
      481 cattcgctag tcaagattca cgagaagctt cactactacg agaagcagaa tcccacgccc
      541 atcctccagg gtgcggcagc cttagctggt gacctggcgg aggagcttca gagcaagccg
      601 ttaaacagcg agatcagaga gctgttgaag ctactgtcaa aacccaatgt gaaggctttg
      661 ctctctgtgc acgataccgt ggctctgaag aactatgacc ccgtgttgcc tcctatgcct
      721 gatgacattg atgaggagga agactccgtg aaaatcatcc gtctggtcaa gaaccgagag
      781 ccgctgggag ctaccattaa gaaagatgag cccaccgggg ccgtggttgt ggccagaatc
      841 atgagaggag gagctgcaga cagaagtggt cttattcacg ttggtgatga acttagggaa
      901 gtgaatggga tacctgtcga ggataaaagc cctgaggaaa tcattcagat cttggctcag
      961 tctcagggcg caatcacatt caagattata cccagcatca aggaggacac accatcaaag
     1021 gagggcaaga tgtttatcaa agccctcttt gactatgacc ctaatgagga taaagcaatt
     1081 ccatgtaagg aagctgggct ttctttcaaa aagggagata ttcttcagat tatgagccag
     1141 gatgatgcaa catggtggca ggcgaagcac gaaggagatg ccaatcccag agcaggcttg
     1201 attccctcaa agcatttcca ggaaaggaga ttggctctga gacgaccaga aatactagtc
     1261 cagcccctgc aagtttccaa caggaaatca tctggtttta gaagaagttt ccgtcttagt
     1321 agaaaagata agaaaacaaa taaatccatg tatgagtgca agaagagtga ccagtacgac
     1381 acagccgatg tgcccactta tgaggaggtg acaccctatc gacggcagat gaatgagaac
     1441 tacagactcg ttgtcttggt tggtcctgta ggggtaggtt tgaacgaact gaaacgaaag
     1501 ctgctgatca gtgacacaca gcactacggc gtgacggtgc cccacaccac cagaccaaga
     1561 agaagccagg agagtgatgg tgttgaatat gtcttcgttt ccaagcactt gtttgagacc
     1621 gatgtacaaa ataacaagtt cattgaatat ggtgaatata aaaacaacta ttacggcaca
     1681 agtatagact cagttcggtc tgtcctagct aaaaacaaag tttgtttgtt ggacgttcag
     1741 cctcatacgg tgaagcactt aaggacacta gaatttaagc cctatgtgat atttataaag
     1801 cctccgtcaa tagagcgttt gagggagaca agaaaaaatg caaagattat ttcaagcaga
     1861 gatgagcaag gtgccgccaa gccctttacg gaggaagact ttcaagaaat gattaaatct
     1921 gcccagataa tggaaagtca atatggtcat ctttttgaca aaactatagt aaatgatgat
     1981 ctcaccgtgg ccttcagtga gcttaaaaca acttttgaca aactggagac agatacccac
     2041 tgggttccag tgagctggtt gcattcgtaa ctaagggaaa tttccataat tatcttttct
     2101 gtagagtgca tggttaaatc agttgccatt ttggtggtag gtttaatcta tatcactgtt
     2161 aagatgtgca gtcttggtta aaattgatgt gttggtcttg tttgtgtctt tttacagcct
     2221 tatttcaagc acagtgtttg agtttaaggt ccaaagtcaa aatctgcaca gtaccgtatt
     2281 ctggttgtct tgactgtgta gctctatctc caaaatgggg ttgaactttt tagagagaca
     2341 cagctggagg atgtacacga gagttcagtg cttcagctgg tctccgacgt catcactgcc
     2401 ttggagtttg catgtcagcc gctgaatacg ttcagttcac agtcttcagg agccagacat
     2461 catcatagag gcgcctgggc tggcagtaag gccgagtctt cttactgttc tgcaagtgca
     2521 aactttttct tacgtagaca caacatattc acagttacag tttgagaagg ccttatgagt
     2581 gcatatatca gtgactcaac aaatgtttaa taagggaaga tgggctttta aaaattacca
     2641 tttatgaaac taaaaacctt tctttatggc ttaagaatgg tgatatcctg gggcaagtaa
     2701 gattacaaag gacattttta tttgtaaatc ctcagacaac atttctggac tcaccagaaa
     2761 ttctggagcc agttatttgg ctttgggttt tcccaataaa ttataagaat gattcctatt
     2821 ctaaaagtag gttttacttg ttactgctac agttaaggaa aatgtgatca tttttcaaat
     2881 gtgtgcagtt gatgacaata tatttaaatt gcactgtaag atatatttta gaaaactttt
     2941 catgtaatgt tatttcttcg tcatcaaaat atttaacact ggccagatac catcctagtc
     3001 ttgccatttt taaagaagtt taagaaagac tcttttgttg taaatattta gatgggatct
     3061 ctcatttttc tttgatgcca ctcatcttca gcgagtaaat tatatagctc aaaataccag
     3121 aaatgtccat agttgtgtaa gagaacatgt ccttccattc ttgcatgccg taagaccctg
     3181 tcaatcagaa atcattgcat ctgcgacttt caagcagaaa aaacggtatt ttttgttgat
     3241 ttgtaaagag agtttagatg tcctgtttaa agaaaaagag tgtagtgaaa ttttatatat
     3301 ttatgaaata tttgaaaggc atattttttt aattatcaaa tgagactatt cattaaataa
     3361 atagtatgta aagacatcat aatttaagat agtagtttta taagtcaggg tcaacattcc
     3421 atgtaaatat ttgaccttta ttcatatgca gatccacaag tgtgttctgt gtgcacattt
     3481 gatagcatca ctcactgagt ttccttcaga cgtgtcaaat ttcatacctt gatacacact
     3541 cacagctaaa tagttagata accagacatt gttacttgac agcataatcc aaacagcaag
     3601 gtctaagtta attaactaaa tagcaagcaa tttagtttaa aaaggggttg gtgagggctt
     3661 tcctggtggc gcagtggttg agagtctgcc tgccgatgca ggggacacgg gttcgtgccc
     3721 cggtctggga ggatcccgcg tgcggcggag cggctgggcc cgtgagccac ggccgctgag
     3781 cctgcgcgtc cggagcctgt gctccgcaac gggagaggcc acaacagtga gaggcccgcg
     3841 tgccacaaaa aaaaaaaaaa aaaaaagggg ggggttggtg ggttgccaga tctaatattg
     3901 aagccatact ttatagttgt gtggctggtc taagaaagta caaatcttcc ttaggtggtt
     3961 tgggtagaat attctctttg aacattgact gaaatttccg aaaaatcagg acttcctagg
     4021 aaatgaatta taatttaggc agtccaaatt ctttgttcag aaatagtacc tggtttgctt
     4081 tttttcattt acagacaatt gcctcaattc tttcctgcgg aggtagagat agtgtaatgt
     4141 ggtagaaacg gggtcctttt tggtggtggt ggtggaggtg ttatagaact atatttgtcc
     4201 agcctttctc cctttttaca cgagagctgg gcagtatttt tttaaataat gaaaagaggt
     4261 acttcagcaa tttgaaaaat cttttatcag gtaatataca tacgtggtct tgcaagtgac
     4321 atttacatgg ccaccttgat gcttagaaag agattcagtt aaaatttaat gcggcagggc
     4381 caactccatg gcctctgatt aatgttgcaa agggcccttg attctgtgct ttatgcatcc
     4441 tcagctccct ctctagcaag gacagactag ttctttaggc agcttgcttc tgagacagtg
     4501 tcagccacta tttgagagaa caggaatatt gggtttttta agtccatgta tttaaaatcc
     4561 aagatcaaga agataattct atactcccat tattaacata ctggaatctt ttttttttac
     4621 cattatttta cttaccaata tagacattat cgatatcttt aaggctgacc ttcctggcat
     4681 tgtgtaatga ttgaatgtat ctaaattgta ataatttaaa attgacaaac atgtaaaacg
     4741 aaattatgtt gttaaaagtt tcctgaagat agagttttat tatttatttt ctttttgact
     4801 agtgagagtt tataaataaa agtcatggaa aacctttgag cttaataaag tatcttcaaa
     4861 tta
//
LOCUS       XM_032618459            4774 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X8, mRNA.
ACCESSION   XM_032618459
VERSION     XM_032618459.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4774
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4774
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 19 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             251..1981
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X1"
                     /protein_id="XP_032474350.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPALSAGSGSDTGLYELLAALPAQLRPHVDSQEDLTFLWDVFGE
                     KSLHSLVKIHEKLHYYEKQNPTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKP
                     NVKALLSVHDTVALKNYDPVLPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTG
                     AVVVARIMRGGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIP
                     SIKEDTPSKEGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAK
                     HEGDANPRAGLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTN
                     KSMYECKKSDQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISD
                     TQHYGVTVPHTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSID
                     SVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRD
                     EQGAAKPFTEEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDT
                     HWVPVSWLHS"
     misc_feature    296..454
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    491..625
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    662..904
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(692..712,743..745,752..754,842..844,854..856,
                     863..868)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    944..1126
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(950..952,1022..1027)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(959..961,965..967,974..976,1007..1009,1061..1066,
                     1115..1117,1121..1126)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1400..1939
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 tcagcttcaa gcagacacca tgccatcatc tgatcctgga ttcaattgtg gtgaacagtt
       61 gagggtttag agggaaaaac acaaccagaa acggactgca ggagacatag atctgggtag
      121 acagcgtggc tgcaggcctc agggttggca tccctgccgc ctttgaacgg agcgtgttgg
      181 cacttcaggg cccagctcag cctgcatcct gcatcccgca tcgcacatcc tgcatcccgc
      241 atcctgcatc atgcccgcgc tgtccgcagg ctcggggagc gacacaggtc tgtatgagct
      301 gctggcggct ctgccagccc agctgcggcc acatgtggac agccaggaag acctgacctt
      361 cctctgggat gtgtttggtg aaaaaagcct gcattcgcta gtcaagattc acgagaagct
      421 tcactactac gagaagcaga atcccacgcc catcctccag ggtgcggcag ccttagctgg
      481 tgacctggcg gaggagcttc agagcaagcc gttaaacagc gagatcagag agctgttgaa
      541 gctactgtca aaacccaatg tgaaggcttt gctctctgtg cacgataccg tggctctgaa
      601 gaactatgac cccgtgttgc ctcctatgcc tgatgacatt gatgaggagg aagactccgt
      661 gaaaatcatc cgtctggtca agaaccgaga gccgctggga gctaccatta agaaagatga
      721 gcccaccggg gccgtggttg tggccagaat catgagagga ggagctgcag acagaagtgg
      781 tcttattcac gttggtgatg aacttaggga agtgaatggg atacctgtcg aggataaaag
      841 ccctgaggaa atcattcaga tcttggctca gtctcagggc gcaatcacat tcaagattat
      901 acccagcatc aaggaggaca caccatcaaa ggagggcaag atgtttatca aagccctctt
      961 tgactatgac cctaatgagg ataaagcaat tccatgtaag gaagctgggc tttctttcaa
     1021 aaagggagat attcttcaga ttatgagcca ggatgatgca acatggtggc aggcgaagca
     1081 cgaaggagat gccaatccca gagcaggctt gattccctca aagcatttcc aggaaaggag
     1141 attggctctg agacgaccag aaatactagt ccagcccctg caagtttcca acaggaaatc
     1201 atctggtttt agaagaagtt tccgtcttag tagaaaagat aagaaaacaa ataaatccat
     1261 gtatgagtgc aagaagagtg accagtacga cacagccgat gtgcccactt atgaggaggt
     1321 gacaccctat cgacggcaga tgaatgagaa ctacagactc gttgtcttgg ttggtcctgt
     1381 aggggtaggt ttgaacgaac tgaaacgaaa gctgctgatc agtgacacac agcactacgg
     1441 cgtgacggtg ccccacacca ccagaccaag aagaagccag gagagtgatg gtgttgaata
     1501 tgtcttcgtt tccaagcact tgtttgagac cgatgtacaa aataacaagt tcattgaata
     1561 tggtgaatat aaaaacaact attacggcac aagtatagac tcagttcggt ctgtcctagc
     1621 taaaaacaaa gtttgtttgt tggacgttca gcctcatacg gtgaagcact taaggacact
     1681 agaatttaag ccctatgtga tatttataaa gcctccgtca atagagcgtt tgagggagac
     1741 aagaaaaaat gcaaagatta tttcaagcag agatgagcaa ggtgccgcca agccctttac
     1801 ggaggaagac tttcaagaaa tgattaaatc tgcccagata atggaaagtc aatatggtca
     1861 tctttttgac aaaactatag taaatgatga tctcaccgtg gccttcagtg agcttaaaac
     1921 aacttttgac aaactggaga cagataccca ctgggttcca gtgagctggt tgcattcgta
     1981 actaagggaa atttccataa ttatcttttc tgtagagtgc atggttaaat cagttgccat
     2041 tttggtggta ggtttaatct atatcactgt taagatgtgc agtcttggtt aaaattgatg
     2101 tgttggtctt gtttgtgtct ttttacagcc ttatttcaag cacagtgttt gagtttaagg
     2161 tccaaagtca aaatctgcac agtaccgtat tctggttgtc ttgactgtgt agctctatct
     2221 ccaaaatggg gttgaacttt ttagagagac acagctggag gatgtacacg agagttcagt
     2281 gcttcagctg gtctccgacg tcatcactgc cttggagttt gcatgtcagc cgctgaatac
     2341 gttcagttca cagtcttcag gagccagaca tcatcataga ggcgcctggg ctggcagtaa
     2401 ggccgagtct tcttactgtt ctgcaagtgc aaactttttc ttacgtagac acaacatatt
     2461 cacagttaca gtttgagaag gccttatgag tgcatatatc agtgactcaa caaatgttta
     2521 ataagggaag atgggctttt aaaaattacc atttatgaaa ctaaaaacct ttctttatgg
     2581 cttaagaatg gtgatatcct ggggcaagta agattacaaa ggacattttt atttgtaaat
     2641 cctcagacaa catttctgga ctcaccagaa attctggagc cagttatttg gctttgggtt
     2701 ttcccaataa attataagaa tgattcctat tctaaaagta ggttttactt gttactgcta
     2761 cagttaagga aaatgtgatc atttttcaaa tgtgtgcagt tgatgacaat atatttaaat
     2821 tgcactgtaa gatatatttt agaaaacttt tcatgtaatg ttatttcttc gtcatcaaaa
     2881 tatttaacac tggccagata ccatcctagt cttgccattt ttaaagaagt ttaagaaaga
     2941 ctcttttgtt gtaaatattt agatgggatc tctcattttt ctttgatgcc actcatcttc
     3001 agcgagtaaa ttatatagct caaaatacca gaaatgtcca tagttgtgta agagaacatg
     3061 tccttccatt cttgcatgcc gtaagaccct gtcaatcaga aatcattgca tctgcgactt
     3121 tcaagcagaa aaaacggtat tttttgttga tttgtaaaga gagtttagat gtcctgttta
     3181 aagaaaaaga gtgtagtgaa attttatata tttatgaaat atttgaaagg catatttttt
     3241 taattatcaa atgagactat tcattaaata aatagtatgt aaagacatca taatttaaga
     3301 tagtagtttt ataagtcagg gtcaacattc catgtaaata tttgaccttt attcatatgc
     3361 agatccacaa gtgtgttctg tgtgcacatt tgatagcatc actcactgag tttccttcag
     3421 acgtgtcaaa tttcatacct tgatacacac tcacagctaa atagttagat aaccagacat
     3481 tgttacttga cagcataatc caaacagcaa ggtctaagtt aattaactaa atagcaagca
     3541 atttagttta aaaaggggtt ggtgagggct ttcctggtgg cgcagtggtt gagagtctgc
     3601 ctgccgatgc aggggacacg ggttcgtgcc ccggtctggg aggatcccgc gtgcggcgga
     3661 gcggctgggc ccgtgagcca cggccgctga gcctgcgcgt ccggagcctg tgctccgcaa
     3721 cgggagaggc cacaacagtg agaggcccgc gtgccacaaa aaaaaaaaaa aaaaaaaggg
     3781 gggggttggt gggttgccag atctaatatt gaagccatac tttatagttg tgtggctggt
     3841 ctaagaaagt acaaatcttc cttaggtggt ttgggtagaa tattctcttt gaacattgac
     3901 tgaaatttcc gaaaaatcag gacttcctag gaaatgaatt ataatttagg cagtccaaat
     3961 tctttgttca gaaatagtac ctggtttgct ttttttcatt tacagacaat tgcctcaatt
     4021 ctttcctgcg gaggtagaga tagtgtaatg tggtagaaac ggggtccttt ttggtggtgg
     4081 tggtggaggt gttatagaac tatatttgtc cagcctttct ccctttttac acgagagctg
     4141 ggcagtattt ttttaaataa tgaaaagagg tacttcagca atttgaaaaa tcttttatca
     4201 ggtaatatac atacgtggtc ttgcaagtga catttacatg gccaccttga tgcttagaaa
     4261 gagattcagt taaaatttaa tgcggcaggg ccaactccat ggcctctgat taatgttgca
     4321 aagggccctt gattctgtgc tttatgcatc ctcagctccc tctctagcaa ggacagacta
     4381 gttctttagg cagcttgctt ctgagacagt gtcagccact atttgagaga acaggaatat
     4441 tgggtttttt aagtccatgt atttaaaatc caagatcaag aagataattc tatactccca
     4501 ttattaacat actggaatct ttttttttta ccattatttt acttaccaat atagacatta
     4561 tcgatatctt taaggctgac cttcctggca ttgtgtaatg attgaatgta tctaaattgt
     4621 aataatttaa aattgacaaa catgtaaaac gaaattatgt tgttaaaagt ttcctgaaga
     4681 tagagtttta ttatttattt tctttttgac tagtgagagt ttataaataa aagtcatgga
     4741 aaacctttga gcttaataaa gtatcttcaa atta
//
LOCUS       XM_032618464            4614 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X9, mRNA.
ACCESSION   XM_032618464
VERSION     XM_032618464.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4614
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             151..1821
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X2"
                     /protein_id="XP_032474355.1"
                     /db_xref="GeneID:116746742"
                     /translation="MDTIHTLRTGRPRSVFSRKRFCPGVELLVFPRIHEKLHYYEKQN
                     PTPILQGAAALAGDLAEELQSKPLNSEIRELLKLLSKPNVKALLSVHDTVALKNYDPV
                     LPPMPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTGAVVVARIMRGGAADRSGLIH
                     VGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIPSIKEDTPSKEGKMFIKALFD
                     YDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAKHEGDANPRAGLIPSKHFQER
                     RLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTNKSMYECKKSDQYDTADVPTY
                     EEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISDTQHYGVTVPHTTRPRRSQES
                     DGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSIDSVRSVLAKNKVCLLDVQPHT
                     VKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRDEQGAAKPFTEEDFQEMIKSA
                     QIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDTHWVPVSWLHS"
     misc_feature    331..465
                     /gene="MPP7"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    502..744
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(532..552,583..585,592..594,682..684,694..696,
                     703..708)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    784..966
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(790..792,862..867)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(799..801,805..807,814..816,847..849,901..906,
                     955..957,961..966)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1240..1779
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 gtctgtatga gctgctggcg gctctgccag cccagctgcg gccacatgtg gacagccagg
       61 aagacctgac cttcctctgg gatgtgtttg gtgaaaaaag cctgcattcg ctagtcaagt
      121 gggatcctga gtaataaggg tgataaattt atggacacaa ttcacactct cagaactgga
      181 aggcctcgtt ctgtgttttc aaggaagcgc ttctgtcctg gagtggaatt gttggtgttc
      241 ccacggattc acgagaagct tcactactac gagaagcaga atcccacgcc catcctccag
      301 ggtgcggcag ccttagctgg tgacctggcg gaggagcttc agagcaagcc gttaaacagc
      361 gagatcagag agctgttgaa gctactgtca aaacccaatg tgaaggcttt gctctctgtg
      421 cacgataccg tggctctgaa gaactatgac cccgtgttgc ctcctatgcc tgatgacatt
      481 gatgaggagg aagactccgt gaaaatcatc cgtctggtca agaaccgaga gccgctggga
      541 gctaccatta agaaagatga gcccaccggg gccgtggttg tggccagaat catgagagga
      601 ggagctgcag acagaagtgg tcttattcac gttggtgatg aacttaggga agtgaatggg
      661 atacctgtcg aggataaaag ccctgaggaa atcattcaga tcttggctca gtctcagggc
      721 gcaatcacat tcaagattat acccagcatc aaggaggaca caccatcaaa ggagggcaag
      781 atgtttatca aagccctctt tgactatgac cctaatgagg ataaagcaat tccatgtaag
      841 gaagctgggc tttctttcaa aaagggagat attcttcaga ttatgagcca ggatgatgca
      901 acatggtggc aggcgaagca cgaaggagat gccaatccca gagcaggctt gattccctca
      961 aagcatttcc aggaaaggag attggctctg agacgaccag aaatactagt ccagcccctg
     1021 caagtttcca acaggaaatc atctggtttt agaagaagtt tccgtcttag tagaaaagat
     1081 aagaaaacaa ataaatccat gtatgagtgc aagaagagtg accagtacga cacagccgat
     1141 gtgcccactt atgaggaggt gacaccctat cgacggcaga tgaatgagaa ctacagactc
     1201 gttgtcttgg ttggtcctgt aggggtaggt ttgaacgaac tgaaacgaaa gctgctgatc
     1261 agtgacacac agcactacgg cgtgacggtg ccccacacca ccagaccaag aagaagccag
     1321 gagagtgatg gtgttgaata tgtcttcgtt tccaagcact tgtttgagac cgatgtacaa
     1381 aataacaagt tcattgaata tggtgaatat aaaaacaact attacggcac aagtatagac
     1441 tcagttcggt ctgtcctagc taaaaacaaa gtttgtttgt tggacgttca gcctcatacg
     1501 gtgaagcact taaggacact agaatttaag ccctatgtga tatttataaa gcctccgtca
     1561 atagagcgtt tgagggagac aagaaaaaat gcaaagatta tttcaagcag agatgagcaa
     1621 ggtgccgcca agccctttac ggaggaagac tttcaagaaa tgattaaatc tgcccagata
     1681 atggaaagtc aatatggtca tctttttgac aaaactatag taaatgatga tctcaccgtg
     1741 gccttcagtg agcttaaaac aacttttgac aaactggaga cagataccca ctgggttcca
     1801 gtgagctggt tgcattcgta actaagggaa atttccataa ttatcttttc tgtagagtgc
     1861 atggttaaat cagttgccat tttggtggta ggtttaatct atatcactgt taagatgtgc
     1921 agtcttggtt aaaattgatg tgttggtctt gtttgtgtct ttttacagcc ttatttcaag
     1981 cacagtgttt gagtttaagg tccaaagtca aaatctgcac agtaccgtat tctggttgtc
     2041 ttgactgtgt agctctatct ccaaaatggg gttgaacttt ttagagagac acagctggag
     2101 gatgtacacg agagttcagt gcttcagctg gtctccgacg tcatcactgc cttggagttt
     2161 gcatgtcagc cgctgaatac gttcagttca cagtcttcag gagccagaca tcatcataga
     2221 ggcgcctggg ctggcagtaa ggccgagtct tcttactgtt ctgcaagtgc aaactttttc
     2281 ttacgtagac acaacatatt cacagttaca gtttgagaag gccttatgag tgcatatatc
     2341 agtgactcaa caaatgttta ataagggaag atgggctttt aaaaattacc atttatgaaa
     2401 ctaaaaacct ttctttatgg cttaagaatg gtgatatcct ggggcaagta agattacaaa
     2461 ggacattttt atttgtaaat cctcagacaa catttctgga ctcaccagaa attctggagc
     2521 cagttatttg gctttgggtt ttcccaataa attataagaa tgattcctat tctaaaagta
     2581 ggttttactt gttactgcta cagttaagga aaatgtgatc atttttcaaa tgtgtgcagt
     2641 tgatgacaat atatttaaat tgcactgtaa gatatatttt agaaaacttt tcatgtaatg
     2701 ttatttcttc gtcatcaaaa tatttaacac tggccagata ccatcctagt cttgccattt
     2761 ttaaagaagt ttaagaaaga ctcttttgtt gtaaatattt agatgggatc tctcattttt
     2821 ctttgatgcc actcatcttc agcgagtaaa ttatatagct caaaatacca gaaatgtcca
     2881 tagttgtgta agagaacatg tccttccatt cttgcatgcc gtaagaccct gtcaatcaga
     2941 aatcattgca tctgcgactt tcaagcagaa aaaacggtat tttttgttga tttgtaaaga
     3001 gagtttagat gtcctgttta aagaaaaaga gtgtagtgaa attttatata tttatgaaat
     3061 atttgaaagg catatttttt taattatcaa atgagactat tcattaaata aatagtatgt
     3121 aaagacatca taatttaaga tagtagtttt ataagtcagg gtcaacattc catgtaaata
     3181 tttgaccttt attcatatgc agatccacaa gtgtgttctg tgtgcacatt tgatagcatc
     3241 actcactgag tttccttcag acgtgtcaaa tttcatacct tgatacacac tcacagctaa
     3301 atagttagat aaccagacat tgttacttga cagcataatc caaacagcaa ggtctaagtt
     3361 aattaactaa atagcaagca atttagttta aaaaggggtt ggtgagggct ttcctggtgg
     3421 cgcagtggtt gagagtctgc ctgccgatgc aggggacacg ggttcgtgcc ccggtctggg
     3481 aggatcccgc gtgcggcgga gcggctgggc ccgtgagcca cggccgctga gcctgcgcgt
     3541 ccggagcctg tgctccgcaa cgggagaggc cacaacagtg agaggcccgc gtgccacaaa
     3601 aaaaaaaaaa aaaaaaaggg gggggttggt gggttgccag atctaatatt gaagccatac
     3661 tttatagttg tgtggctggt ctaagaaagt acaaatcttc cttaggtggt ttgggtagaa
     3721 tattctcttt gaacattgac tgaaatttcc gaaaaatcag gacttcctag gaaatgaatt
     3781 ataatttagg cagtccaaat tctttgttca gaaatagtac ctggtttgct ttttttcatt
     3841 tacagacaat tgcctcaatt ctttcctgcg gaggtagaga tagtgtaatg tggtagaaac
     3901 ggggtccttt ttggtggtgg tggtggaggt gttatagaac tatatttgtc cagcctttct
     3961 ccctttttac acgagagctg ggcagtattt ttttaaataa tgaaaagagg tacttcagca
     4021 atttgaaaaa tcttttatca ggtaatatac atacgtggtc ttgcaagtga catttacatg
     4081 gccaccttga tgcttagaaa gagattcagt taaaatttaa tgcggcaggg ccaactccat
     4141 ggcctctgat taatgttgca aagggccctt gattctgtgc tttatgcatc ctcagctccc
     4201 tctctagcaa ggacagacta gttctttagg cagcttgctt ctgagacagt gtcagccact
     4261 atttgagaga acaggaatat tgggtttttt aagtccatgt atttaaaatc caagatcaag
     4321 aagataattc tatactccca ttattaacat actggaatct ttttttttta ccattatttt
     4381 acttaccaat atagacatta tcgatatctt taaggctgac cttcctggca ttgtgtaatg
     4441 attgaatgta tctaaattgt aataatttaa aattgacaaa catgtaaaac gaaattatgt
     4501 tgttaaaagt ttcctgaaga tagagtttta ttatttattt tctttttgac tagtgagagt
     4561 ttataaataa aagtcatgga aaacctttga gcttaataaa gtatcttcaa atta
//
LOCUS       XM_032618473            4537 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 7 (MPP7),
            transcript variant X10, mRNA.
ACCESSION   XM_032618473
VERSION     XM_032618473.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4537
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4537
                     /gene="MPP7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746742"
     CDS             389..1744
                     /gene="MPP7"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 7 isoform X3"
                     /protein_id="XP_032474364.1"
                     /db_xref="GeneID:116746742"
                     /translation="MPDDIDEEEDSVKIIRLVKNREPLGATIKKDEPTGAVVVARIMR
                     GGAADRSGLIHVGDELREVNGIPVEDKSPEEIIQILAQSQGAITFKIIPSIKEDTPSK
                     EGKMFIKALFDYDPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAKHEGDANPRA
                     GLIPSKHFQERRLALRRPEILVQPLQVSNRKSSGFRRSFRLSRKDKKTNKSMYECKKS
                     DQYDTADVPTYEEVTPYRRQMNENYRLVVLVGPVGVGLNELKRKLLISDTQHYGVTVP
                     HTTRPRRSQESDGVEYVFVSKHLFETDVQNNKFIEYGEYKNNYYGTSIDSVRSVLAKN
                     KVCLLDVQPHTVKHLRTLEFKPYVIFIKPPSIERLRETRKNAKIISSRDEQGAAKPFT
                     EEDFQEMIKSAQIMESQYGHLFDKTIVNDDLTVAFSELKTTFDKLETDTHWVPVSWLH
                     S"
     misc_feature    425..667
                     /gene="MPP7"
                     /note="PDZ domain of membrane palmitoylated proteins 3
                     (MPP3), MPP4, and MPP7, and related domains; Region:
                     PDZ_MPP3-MPP4-MPP7-like; cd06799"
                     /db_xref="CDD:467260"
     misc_feature    order(455..475,506..508,515..517,605..607,617..619,
                     626..631)
                     /gene="MPP7"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467260"
     misc_feature    707..889
                     /gene="MPP7"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 7 (or MAGUK p55 subfamily member 7); Region:
                     SH3_MPP7; cd12033"
                     /db_xref="CDD:212966"
     misc_feature    order(713..715,785..790)
                     /gene="MPP7"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212966"
     misc_feature    order(722..724,728..730,737..739,770..772,824..829,
                     878..880,884..889)
                     /gene="MPP7"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212966"
     misc_feature    1163..1702
                     /gene="MPP7"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 agacagcgtg gctgcaggcc tcagggttgg catccctgcc gcctttgaac ggagcgtgtt
       61 ggcacttcag ggcccagctc agcctgcatc ctgcatcccg catcgcacat cctgcatccc
      121 gcatcctgca tcatgcccgc gctgtccgca ggctcgggga gcgacacaga ttcacgagaa
      181 gcttcactac tacgagaagc agaatcccac gcccatcctc cagggtgcgg cagccttagc
      241 tggtgacctg gcggaggagc ttcagagcaa gccgttaaac agcgagatca gagagctgtt
      301 gaagctactg tcaaaaccca atgtgaaggc tttgctctct gtgcacgata ccgtggctct
      361 gaagaactat gaccccgtgt tgcctcctat gcctgatgac attgatgagg aggaagactc
      421 cgtgaaaatc atccgtctgg tcaagaaccg agagccgctg ggagctacca ttaagaaaga
      481 tgagcccacc ggggccgtgg ttgtggccag aatcatgaga ggaggagctg cagacagaag
      541 tggtcttatt cacgttggtg atgaacttag ggaagtgaat gggatacctg tcgaggataa
      601 aagccctgag gaaatcattc agatcttggc tcagtctcag ggcgcaatca cattcaagat
      661 tatacccagc atcaaggagg acacaccatc aaaggagggc aagatgttta tcaaagccct
      721 ctttgactat gaccctaatg aggataaagc aattccatgt aaggaagctg ggctttcttt
      781 caaaaaggga gatattcttc agattatgag ccaggatgat gcaacatggt ggcaggcgaa
      841 gcacgaagga gatgccaatc ccagagcagg cttgattccc tcaaagcatt tccaggaaag
      901 gagattggct ctgagacgac cagaaatact agtccagccc ctgcaagttt ccaacaggaa
      961 atcatctggt tttagaagaa gtttccgtct tagtagaaaa gataagaaaa caaataaatc
     1021 catgtatgag tgcaagaaga gtgaccagta cgacacagcc gatgtgccca cttatgagga
     1081 ggtgacaccc tatcgacggc agatgaatga gaactacaga ctcgttgtct tggttggtcc
     1141 tgtaggggta ggtttgaacg aactgaaacg aaagctgctg atcagtgaca cacagcacta
     1201 cggcgtgacg gtgccccaca ccaccagacc aagaagaagc caggagagtg atggtgttga
     1261 atatgtcttc gtttccaagc acttgtttga gaccgatgta caaaataaca agttcattga
     1321 atatggtgaa tataaaaaca actattacgg cacaagtata gactcagttc ggtctgtcct
     1381 agctaaaaac aaagtttgtt tgttggacgt tcagcctcat acggtgaagc acttaaggac
     1441 actagaattt aagccctatg tgatatttat aaagcctccg tcaatagagc gtttgaggga
     1501 gacaagaaaa aatgcaaaga ttatttcaag cagagatgag caaggtgccg ccaagccctt
     1561 tacggaggaa gactttcaag aaatgattaa atctgcccag ataatggaaa gtcaatatgg
     1621 tcatcttttt gacaaaacta tagtaaatga tgatctcacc gtggccttca gtgagcttaa
     1681 aacaactttt gacaaactgg agacagatac ccactgggtt ccagtgagct ggttgcattc
     1741 gtaactaagg gaaatttcca taattatctt ttctgtagag tgcatggtta aatcagttgc
     1801 cattttggtg gtaggtttaa tctatatcac tgttaagatg tgcagtcttg gttaaaattg
     1861 atgtgttggt cttgtttgtg tctttttaca gccttatttc aagcacagtg tttgagttta
     1921 aggtccaaag tcaaaatctg cacagtaccg tattctggtt gtcttgactg tgtagctcta
     1981 tctccaaaat ggggttgaac tttttagaga gacacagctg gaggatgtac acgagagttc
     2041 agtgcttcag ctggtctccg acgtcatcac tgccttggag tttgcatgtc agccgctgaa
     2101 tacgttcagt tcacagtctt caggagccag acatcatcat agaggcgcct gggctggcag
     2161 taaggccgag tcttcttact gttctgcaag tgcaaacttt ttcttacgta gacacaacat
     2221 attcacagtt acagtttgag aaggccttat gagtgcatat atcagtgact caacaaatgt
     2281 ttaataaggg aagatgggct tttaaaaatt accatttatg aaactaaaaa cctttcttta
     2341 tggcttaaga atggtgatat cctggggcaa gtaagattac aaaggacatt tttatttgta
     2401 aatcctcaga caacatttct ggactcacca gaaattctgg agccagttat ttggctttgg
     2461 gttttcccaa taaattataa gaatgattcc tattctaaaa gtaggtttta cttgttactg
     2521 ctacagttaa ggaaaatgtg atcatttttc aaatgtgtgc agttgatgac aatatattta
     2581 aattgcactg taagatatat tttagaaaac ttttcatgta atgttatttc ttcgtcatca
     2641 aaatatttaa cactggccag ataccatcct agtcttgcca tttttaaaga agtttaagaa
     2701 agactctttt gttgtaaata tttagatggg atctctcatt tttctttgat gccactcatc
     2761 ttcagcgagt aaattatata gctcaaaata ccagaaatgt ccatagttgt gtaagagaac
     2821 atgtccttcc attcttgcat gccgtaagac cctgtcaatc agaaatcatt gcatctgcga
     2881 ctttcaagca gaaaaaacgg tattttttgt tgatttgtaa agagagttta gatgtcctgt
     2941 ttaaagaaaa agagtgtagt gaaattttat atatttatga aatatttgaa aggcatattt
     3001 ttttaattat caaatgagac tattcattaa ataaatagta tgtaaagaca tcataattta
     3061 agatagtagt tttataagtc agggtcaaca ttccatgtaa atatttgacc tttattcata
     3121 tgcagatcca caagtgtgtt ctgtgtgcac atttgatagc atcactcact gagtttcctt
     3181 cagacgtgtc aaatttcata ccttgataca cactcacagc taaatagtta gataaccaga
     3241 cattgttact tgacagcata atccaaacag caaggtctaa gttaattaac taaatagcaa
     3301 gcaatttagt ttaaaaaggg gttggtgagg gctttcctgg tggcgcagtg gttgagagtc
     3361 tgcctgccga tgcaggggac acgggttcgt gccccggtct gggaggatcc cgcgtgcggc
     3421 ggagcggctg ggcccgtgag ccacggccgc tgagcctgcg cgtccggagc ctgtgctccg
     3481 caacgggaga ggccacaaca gtgagaggcc cgcgtgccac aaaaaaaaaa aaaaaaaaaa
     3541 ggggggggtt ggtgggttgc cagatctaat attgaagcca tactttatag ttgtgtggct
     3601 ggtctaagaa agtacaaatc ttccttaggt ggtttgggta gaatattctc tttgaacatt
     3661 gactgaaatt tccgaaaaat caggacttcc taggaaatga attataattt aggcagtcca
     3721 aattctttgt tcagaaatag tacctggttt gctttttttc atttacagac aattgcctca
     3781 attctttcct gcggaggtag agatagtgta atgtggtaga aacggggtcc tttttggtgg
     3841 tggtggtgga ggtgttatag aactatattt gtccagcctt tctccctttt tacacgagag
     3901 ctgggcagta tttttttaaa taatgaaaag aggtacttca gcaatttgaa aaatctttta
     3961 tcaggtaata tacatacgtg gtcttgcaag tgacatttac atggccacct tgatgcttag
     4021 aaagagattc agttaaaatt taatgcggca gggccaactc catggcctct gattaatgtt
     4081 gcaaagggcc cttgattctg tgctttatgc atcctcagct ccctctctag caaggacaga
     4141 ctagttcttt aggcagcttg cttctgagac agtgtcagcc actatttgag agaacaggaa
     4201 tattgggttt tttaagtcca tgtatttaaa atccaagatc aagaagataa ttctatactc
     4261 ccattattaa catactggaa tctttttttt ttaccattat tttacttacc aatatagaca
     4321 ttatcgatat ctttaaggct gaccttcctg gcattgtgta atgattgaat gtatctaaat
     4381 tgtaataatt taaaattgac aaacatgtaa aacgaaatta tgttgttaaa agtttcctga
     4441 agatagagtt ttattattta ttttcttttt gactagtgag agtttataaa taaaagtcat
     4501 ggaaaacctt tgagcttaat aaagtatctt caaatta
//
LOCUS       XR_004347871             270 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746781
            (LOC116746781), ncRNA.
ACCESSION   XR_004347871
VERSION     XR_004347871.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..270
                     /gene="LOC116746781"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746781"
     ncRNA           1..270
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746781"
                     /product="uncharacterized LOC116746781"
                     /db_xref="GeneID:116746781"
ORIGIN      
        1 caggccatcg cggaaatatg tgcgtgggag ttacatcctc gaacaatgga gcgtctcaat
       61 cagtagggaa caacggaacc aagagcccag gaaggaggga tgggagctgg agctgaaaac
      121 gaccttcagc atgaggtcac tgcctgtttt tagggctgag gaagaagatg taaaggaggg
      181 ggtaatgaat tccacaaatt tatcagctgc tgtgtgaagt aatactccca ttaagcacac
      241 tgggaaacca gctcttccag ccagggaagg
//
LOCUS       XR_004347873            1707 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746787
            (LOC116746787), ncRNA.
ACCESSION   XR_004347873
VERSION     XR_004347873.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1707
                     /gene="LOC116746787"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746787"
     ncRNA           1..1707
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746787"
                     /product="uncharacterized LOC116746787"
                     /db_xref="GeneID:116746787"
ORIGIN      
        1 aaggtcccgt agggtcccaa gtgcggggag cttttgtgcc cgtggagttg ggacatacca
       61 ccatcctagc ttggaggtgg gtggcaggta caaccatgaa ggcagattat taatggatgg
      121 gactaagtca ttaaaaggag tgagaggaac tactatatgc cagacagagg aagcaccatc
      181 tttgatgcag ctatcagtat ttctttatat tacagaaagt ataaaaatac agcttcaaga
      241 cacatgccct agactctgct ctcagactgc caaccataag ctctgactgg ttccttggac
      301 tttgcacagg ttctcttatt caacgcttgc aataactata tgaacaggaa acaacgaagg
      361 agctgagctc tgtgaccagt ttcgatacca gctgaaaccg aagctgagca gatatgcaag
      421 agcaaagaat cagaagatgc cagaagtgag gtgaggaaac agtttgggag tgaactgact
      481 ggccaggttc tggggctagc agcggacgag ctgatcgaga ctggaacctc attcttctga
      541 ctccaagctc aaggtgtgtg ggcttgagct tccgagccca caggaagcgc cggctcccac
      601 taagcctcca gttaggccat gactcttccc accaacaggt aaagtccttt ttcctccccc
      661 tgaacctagg atgaccttgg acttaattca gccagtagaa tgcagcagac atgtcagtgt
      721 gccaatttca agcctaggcc tcaagaggcc ttgaatgctt ctgctttcta tcccttggag
      781 ttttgtccag ccaccaggtg atcaaaccca ggccaggctg ttggggaaag agagaccaca
      841 ccgaacagag ttgagctgtg tcagctgagg gcatcctacg ccagccagcc cccagctatc
      901 ccagcagcgg actgctgaca gtgactgagc cagaggaaat cagaactgcc tagctgggtc
      961 tagccaaagt tgccaacctg gagacctgtg agctaaataa atacttgttc taacagcaaa
     1021 agttatctga tacaatgtat gcagatattt ctttagagta gatttttttc aaactttagc
     1081 atgtatcagt atcagctggt ggggttttaa aatcacagat tgctgggcac cactgattta
     1141 gtagatctgg gtgggacttg agcatttgca tttctaacaa gttctcaggt gctggtaatg
     1201 acgccggtcc aagggccata ctttgaaaat cactgctgta gaatatataa cctaaaaatg
     1261 gtattgctgg gtcatgaatt ataagcatat ttaatagcta aatcgatact cccaaactgc
     1321 tatccaaagt aaatatatcc ttattgaaat tttaagggat aaaagaataa gtcactgaaa
     1381 caaaacttat aaaccagata gtatgaggaa caagtgtgaa taaagaaagt atcagcatga
     1441 agggggaagt aactcactaa ttcttggggt tggaaggtgg agcaggaagc tgattaacag
     1501 taatatttat gaccaaagca cagagtatga atgatgaagc aaacctgaaa tgttaagcca
     1561 agaaaataaa tagtatttca taatattaca tattacacta tatactagag caggacttac
     1621 aaggagaagc tgctctagaa gagtattcct tctaaagaaa taacagggga gagagagatg
     1681 aggtcctaaa tggtcagtcc ccaccct
//
LOCUS       XM_032618501             987 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus gap junction protein delta 4 (GJD4),
            mRNA.
ACCESSION   XM_032618501
VERSION     XM_032618501.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 33% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..987
                     /gene="GJD4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins"
                     /db_xref="GeneID:116746789"
     CDS             1..987
                     /gene="GJD4"
                     /codon_start=1
                     /product="gap junction delta-4 protein"
                     /protein_id="XP_032474392.1"
                     /db_xref="GeneID:116746789"
                     /translation="MDQLDLLGFLVITLNCNVTMVGKVWLIFMVLLRMGVLILAGSPV
                     YQDEQERFVCNTLQPGCANVCYDIFAPVSHLRFWLIQSVSVLLPSAVFSVYVLHKGAE
                     LAARGSRWLDDDSEDHDGPELTPGARRCLTVPDFSSGYVVHLCLRTLTEAAFGALHYL
                     LFGFLVPKRFSCTHPPCTSVVDCYVSRPTEKSILMLFVWAVCALSLLLSVADLVCSVR
                     WETRRRHGGARRRPCQGAGSAAREGHGAPEGRGARARRGLRTGGQGAYSPAAEPTEPG
                     HPDLPGEDESDALSSASDQPRGVGPGAAAPGWEERPCAPSAALPGPSKSEWV"
     misc_feature    13..645
                     /gene="GJD4"
                     /note="Region: Connexin; pfam00029"
                     /db_xref="CDD:459638"
ORIGIN      
        1 atggaccagc tggacctgct ggggttcctc gtcatcaccc taaactgcaa cgtgaccatg
       61 gtggggaagg tctggcttat cttcatggtg ctgctgagga tgggggtgct catcctggcc
      121 gggtcgccgg tctaccagga tgagcaggag aggttcgtgt gcaatactct gcagcccgga
      181 tgcgccaacg tttgctacga catcttcgcc cccgtgtccc acctgcggtt ctggctgatc
      241 cagagcgtgt ctgttctgct tccatccgcc gtcttcagtg tctacgtgct gcacaaagga
      301 gccgagctgg cggcacgtgg atcccgctgg ctggatgatg actcggagga ccacgacggc
      361 cctgaactga ccccgggggc caggcgctgc ctgacggtgc cggacttctc ctcgggctac
      421 gtggtccacc tctgcctccg gaccctgacg gaggcagctt tcggtgccct gcattacctc
      481 ctcttcggat tcttggtccc caagagattc tcgtgcacgc accctccttg caccagcgtg
      541 gtggactgtt acgtctctcg gcccacggag aagtccatcc tgatgctttt cgtctgggcc
      601 gtctgcgcgc tgtccttgtt gctcagtgtc gccgacctgg tctgcagcgt gcgctgggag
      661 acgcgcaggc gacacggcgg ggcccggagg aggccgtgtc aaggggcggg gagtgcggcg
      721 cgggagggac acggggcgcc cgagggacgt ggggcgcgcg ctcgccgggg cctgcggact
      781 ggagggcagg gcgcgtacag ccccgcagcg gagcccaccg agccgggaca cccggatctg
      841 ccaggggagg acgagagcga cgcgctgtcc tctgccagcg accagccgcg cggggtcggg
      901 ccgggagcgg cggccccggg gtgggaggag cgcccctgcg cgccaagcgc cgcgctcccg
      961 ggccccagca agtccgagtg ggtgtga
//
LOCUS       XM_032618513            6066 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uveal autoantigen with coiled-coil
            domains and ankyrin repeats (UACA), transcript variant X1, mRNA.
ACCESSION   XM_032618513
VERSION     XM_032618513.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6066
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6066
                     /gene="UACA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 98 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746795"
     CDS             159..4406
                     /gene="UACA"
                     /codon_start=1
                     /product="uveal autoantigen with coiled-coil domains and
                     ankyrin repeats isoform X1"
                     /protein_id="XP_032474404.1"
                     /db_xref="GeneID:116746795"
                     /translation="MKSLKSRLRRQDASGPASSGAAAAASAQAADWNKYDDRLMKAAE
                     KGDVEKVSSILAKKGVNPGKLDVEGRSAFHVVASKGNLECLNAILIHGIDITTSDTAG
                     RNALHLAAKYGHALCLQKLLQYSCPTERVDLQGRTALHDAAMADCPSSIQLLCDHGAS
                     VNTRDVDGRTPLVLATQMCRPSICQLLIDRGADINSRDKQNRTALMLGCEYGCKDAVE
                     VLIRNGADVTLLDALGHDSSYYARIGDNLDILTLLKTALENTSKGREVWKKGPSLQQR
                     NLTQMLDEVNMKSDQREHQNIQDLEIENEDLKERLRKIQQEQRILLDKVNGLQLQLNE
                     EVMVADDLESEKEKLKSLLAAKEKQHEESLRTVEALKNRFKYFESNHLGSGSHFRKED
                     MLLKQGQMYMTDSQCTSTGMPAHMQSRSMLRPLELALPNQTSYSENEILKKELEAMRT
                     FCDSAKQDRLKLQNELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYES
                     EGKVKQMQTHFLALKEHLTSDAATGNHRLTEELKDQLKDMKVKYEGASAEVGKLRNQI
                     KQNEMLVEEFKRDEGKLMEETKRLQKELSMCELEREKRERKVTEMEGQLKDLSSKLAL
                     SIPAEKFENMKSLLSNEVNEKAKKLIEMEREYERSLSEIRPLKRELENLKAKLAQQVK
                     PEEHEQLKSRLEQKSGELGKRISELTSKNQTLQKEIEKVYLDNKLLNQQVHNLTTEMK
                     NHYVPLKVSEEMKKSRDVIVDDLNKKLSDVTHKYTEKKLEMEKLLMENASLSKNVSRL
                     ETVFIPPEKHEKETMALKSNIVELKKQLSELDKKCGNDQEKIYSLTSENTDLKKIMIN
                     QYVPMKTHEEIKTALSSTLDKTSRELVDVKKKCEDINQEFVKIKDENEILKRNLENTQ
                     NQVKAEYISLREHEEKMSAVRKSMKKVQDNSAEILANYKKGQEEIVTLHAEIEAQKRE
                     LDTIQECIKLKYAPIISFEECERKFKATEKELKEQLSEQTQKYHISEEEAKKCKQEND
                     KLKKEILTLQKDLKDKNVLAENSHEMERALSRKTEELNRQLKDLLQKYTEVKNEKEKL
                     AEENAKQTSEMLAAQTLLQKQHVPLEQVEALKKSLNGTIEMLKEELKSKQRCYEKEQQ
                     TVTQLRQMLENQKNSSVPLAEHLQIKEAFEKEVGIIKASLREKEEESQNKTKEVSKLQ
                     SEIQNTKQALKKLETREVVDLSKYKATKSDLETQISNLNEKLANLNRKYEEVCEEVLH
                     AKKKELSAKDEKELLHFSIEQEIKDQQERCDKSLTTITELQRRIQESAKQIEAKDNKI
                     TELLSDVERLKQALSGLSQLTCASRSPSKRQSQLIGSLQHQVKSLQQQLADADRQHQE
                     VIAIYRTHLLSAAQGHMDEDVQAALLQIIQMRQGLVC"
     misc_feature    255..968
                     /gene="UACA"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    273..356
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    360..455
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    462..554
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    561..653
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(564..566,576..581,588..596,600..605,615..617,
                     624..626,651..653,657..659,663..665,675..680,687..695,
                     699..704,714..716,723..725,750..752,756..758,762..764,
                     774..779,786..794,798..803,813..815,822..824,849..851)
                     /gene="UACA"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    657..752
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    756..851
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <828..>1163
                     /gene="UACA"
                     /note="SH3 domain-containing protein; Provisional; Region:
                     PRK10884"
                     /db_xref="CDD:182809"
     misc_feature    1776..4082
                     /gene="UACA"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 ggccgacagc cgccgggggc ccccaggtgg caggcaggtg gggcccggac tgccagcgct
       61 gccgcctcct ctgagcgctt gcagccctca gactctaagg ttcgcgcgcg gatcagacac
      121 gccgcgctca gcgggagagg gactgccacg acttggccat gaagagcctc aagtcccgcc
      181 tgaggaggca ggacgcgtcc ggccccgcgt cgtccggcgc cgccgccgct gccagcgcgc
      241 aagcagcaga ttggaacaaa tatgatgacc gattgatgaa agcagcagaa aagggagatg
      301 tagaaaaagt gtcctcaatc cttgctaaaa agggggtcaa tccaggcaaa ctagatgtgg
      361 aaggcagatc tgcctttcat gttgtagcct caaaggggaa tcttgagtgt ttgaatgcca
      421 tcctcataca tggaattgat attacaacca gtgacaccgc agggaggaat gctcttcacc
      481 tggctgcaaa gtatgggcat gcattgtgtc tacaaaaact tctacagtac agttgtccca
      541 ctgaacgtgt agacctgcag ggaagaactg cacttcacga tgcagctatg gcagactgtc
      601 cttctagcat acagctgctc tgcgaccacg gggcctcagt gaataccaga gatgtagatg
      661 ggcggacgcc acttgttctg gctactcaga tgtgtaggcc atcaatatgt caactgctga
      721 tagatagagg ggcggatatt aattccagag acaaacaaaa caggactgct ctcatgctag
      781 gttgcgagta tggttgcaaa gatgcagtag aagtcttaat cagaaatggt gctgatgtaa
      841 ccttgctgga tgcccttggc catgatagtt cttactatgc aagaattggt gacaatctgg
      901 acattctaac cttactgaag actgcattag aaaataccag caaagggaga gaagtttgga
      961 agaaaggacc atctttacaa cagcgaaatt tgacgcagat gctagatgaa gtaaatatga
     1021 aatcagatca gagggagcat caaaacattc aggatctgga gattgaaaat gaagatctga
     1081 aagagaggtt gagaaaaatt cagcaggaac agagaatatt attggataaa gtaaatggtt
     1141 tacaactaca gctgaatgag gaagtaatgg ttgctgatga tctggaaagt gagaaagaaa
     1201 agctgaagtc ccttttggca gctaaagaaa agcaacatga agaaagccta agaactgttg
     1261 aggctctgaa aaatagattc aagtattttg agagcaatca tttaggatcg ggaagtcatt
     1321 tcagaaaaga agatatgctt cttaaacaag gtcaaatgta catgacagac tcacagtgta
     1381 cttccacagg tatgccagcc catatgcaaa gcagatctat gttaagacca ctagagctgg
     1441 ccttacctaa tcaaacctca tattcagaaa atgaaatttt aaagaaagaa ttagaagcaa
     1501 tgagaacttt ctgtgattct gcaaaacaag acagactcaa gctccaaaac gaactggctc
     1561 acaaggtggc agagtgcaaa gccttagcat tggaatgtga aagggtcaaa gaggattcag
     1621 atgagcagat aaagcaacta gaagacgcct tgaaagatgt tcagaagaga atgtatgagt
     1681 cagaaggtaa agtgaaacaa atgcagacac attttcttgc cctgaaagag cacctaacaa
     1741 gtgacgcagc tactgggaac cacagactga cagaggaact gaaggatcag ttgaaagaca
     1801 tgaaagtgaa atatgaaggt gcgtctgcag aagtggggaa attaagaaac caaatcaaac
     1861 aaaatgagat gttagtcgaa gagtttaaga gggatgaagg caagctaatg gaagagacta
     1921 agcgactgca gaaggaattg agcatgtgtg aactggagcg agagaagaga gagagaaagg
     1981 tcaccgagat ggaaggccag ttaaaggact tgtcatccaa gctggccctt tccattccag
     2041 cagagaaatt tgaaaacatg aagagcttgt tgtcaaatga agtaaacgag aaggcaaaaa
     2101 aattaataga gatggaaagg gaatatgaaa gatcacttag cgaaattaga ccgttaaaga
     2161 gagaacttga gaatttgaag gccaaactgg ctcagcaggt caagccggaa gaacatgagc
     2221 agctgaagag cagattagag caaaagtcag gagaacttgg gaagagaatc agtgagttaa
     2281 cgtcgaaaaa tcagacacta caaaaggaga tcgaaaaggt ctatctggat aataagctcc
     2341 tcaaccaaca agtgcataac ttaacgactg aaatgaaaaa tcattacgtc cctttaaaag
     2401 taagtgaaga aatgaaaaag tcacgtgatg taattgttga tgatttgaat aaaaagcttt
     2461 cagatgtgac acacaaatat acagaaaaga agttggaaat ggagaaattg ctgatggaaa
     2521 atgccagttt aagtaagaac gttagccgcc tggaaactgt gttcatacct ccagagaaac
     2581 acgaaaaaga gacaatggcc ctgaaatcta atatcgttga acttaagaag cagctatctg
     2641 aacttgataa aaaatgtggt aacgaccaag agaaaatata ttcgctcaca tctgaaaaca
     2701 ctgacttgaa aaagataatg attaatcagt atgtgccaat gaaaacccat gaagagatta
     2761 aaactgcttt gagtagcaca ttggataaaa ccagcagaga attagtagac gtgaagaaga
     2821 agtgtgaaga tataaatcaa gaatttgtga aaataaaaga tgagaatgaa atattaaaaa
     2881 gaaacctgga gaacactcag aaccaagtaa aagctgagta cataagccta agagagcacg
     2941 aggaaaagat gagtgctgtg aggaagagca tgaagaaggt ccaggacaac agtgccgaaa
     3001 tattggctaa ctacaaaaaa ggccaggagg agattgtaac actgcatgcc gagatcgagg
     3061 cccagaaaag ggaacttgac acaatacaag aatgcatcaa gctaaaatat gccccaatta
     3121 tcagctttga agagtgtgag agaaaattta aagctactga gaaagaacta aaagaacagt
     3181 tatccgagca gacacaaaag tatcacatca gcgaagaaga ggccaagaag tgcaagcaag
     3241 aaaacgacaa gttaaagaag gagatcctca ctcttcagaa ggatctaaag gataaaaatg
     3301 ttcttgctga gaattctcat gaaatggaaa gagcattaag cagaaaaaca gaagagctga
     3361 acagacagtt aaaagacctg ttgcagaaat acacagaggt aaagaacgag aaagagaagc
     3421 tggcagagga aaatgccaag cagacctctg agatgcttgc agcacaaact cttttgcaga
     3481 aacagcatgt tccactggaa caggttgagg ccctgaagaa gtctcttaat ggcacaattg
     3541 agatgcttaa ggaagaactg aagagtaagc aaaggtgtta tgagaaagag cagcagacag
     3601 tgacccaact gcggcagatg ctggagaatc agaagaactc ctctgtgccc ctggcagagc
     3661 atttgcagat taaggaagca tttgagaaag aagttggaat cataaaagct agcttgagag
     3721 aaaaggaaga agagagccaa aacaaaacca aagaggtctc caaactccag tctgagattc
     3781 agaatacgaa acaagcatta aaaaaattag agactaggga ggtggttgat ttgtctaaat
     3841 ataaagcaac gaaaagtgat ttggagacac agatttccaa cttaaatgaa aaattggcca
     3901 atctgaatag gaagtatgag gaagtatgtg aggaggtttt gcatgccaaa aagaaggaac
     3961 tgtctgcaaa agatgagaag gaattgctcc atttcagcat tgagcaagaa atcaaggatc
     4021 agcaggaacg atgcgataag tccttaacaa caatcacaga gttacagaga agaatacagg
     4081 aatccgccaa acagatcgaa gctaaagata ataagataac tgaactgctc agcgatgtgg
     4141 aaagactaaa acaagcactc agtggcctct cccagctcac ctgtgcgagc aggagtccca
     4201 gtaagaggca gagtcagctg attggcagtc tgcagcacca ggtcaagtcc ctgcagcagc
     4261 agctggcgga tgctgacaga cagcaccaag aagtaattgc aatttatcgg acacaccttc
     4321 ttagtgctgc acagggtcac atggatgaag atgtgcaggc ggccttactc cagatcatac
     4381 agatgcggca agggcttgtg tgctagcatc agcacccacc agccgatggt ggctttccct
     4441 gctggtgctg agcattctgt gtgcaactcc atggcctttc tggacctcac tttccctcag
     4501 ctttccctgc tggtgctagt ataattaaaa taaagtatat tttgatccat tagtaggttt
     4561 ttaacttaga caaatacgtt actgagtttt tcaatatcag ttcaaatctt atattcttta
     4621 tatgttaatt ttacaattag ataaacaacg taacactttg ccttggattg gctacttatt
     4681 tttaattgat tgagtactca ataaaacatg agtcatctga gtgggtccat atgaagaggg
     4741 attaggctga aataattatt aaagttttct tccagagaaa ttaattgggt tggtagcaac
     4801 ttttaagtgg atcaagagat ctttcagatg ttcagtcgag ccatgagacc taatgcagtt
     4861 tcaaggaatg catggtaact tggctggcca agttccattt ttattaaagt aacttaatga
     4921 gtgcttttga cttcttttgg aggtacagat tttttttctc tctacactag taagttttat
     4981 gccttttaaa ataaacttct tttcacaaat ggtttgcggt gctaaattac atttaggcta
     5041 agaacaggca agggtggaat atatcaggaa tttataataa aatttcctca taatctccgc
     5101 aacggtatct taattttcac ttgtaatgac ttttcttttt acagtatgac gagaactatg
     5161 ataaatggta tactggattt ttcaaagtgt caaaaatgtt agactttttt tagtaattac
     5221 tctgacattt gctactgtag tagcaaagca ctcattatat atgcatcctc caaatgtttt
     5281 gtacttattt ataggaaaat tgcactaatg agattaataa tgtgaaatgc aatttttttg
     5341 caaaattagc attagaaaat tgaatttaga agacagatct ttaaggtttt agacaaaagt
     5401 gcaataacat tgtaaactgt aagaatatag atagcaagaa aataatgaaa ttgggcatgt
     5461 ttatagtaaa tattataacc aaccattttt attaactaca tctcattaag gaaagtttat
     5521 atgttttgtt attttattaa tattttattt acaattcaga ttgaaaatga ctaatttgac
     5581 tgttagcaaa taaactaaac aaatgaatca ttgcagccaa gctttttaaa ttgcaaaatg
     5641 tgccttagca ataatctttg agcatcctga accagatttt tgatcccatt tttgtgtaat
     5701 aacaaggacg aaggaccatc aaaatatcaa taacttattc caccaaagag taagccattg
     5761 tgtttcttca gtatagaaac agaagcgaaa agtcagcaac ggatttcttt tgaattcttt
     5821 aggtaggtat atacaataaa caatgtttgg attctttaat ttttatattt aatgttgtcc
     5881 ttcagcatga gctctgtgtc atgagtttta ggtcacctat tgaagctcta gagtagagaa
     5941 gttcttaact gaatacttac atttcagtgt tatattttcc ttattagggg taggaaagga
     6001 acccctatat gggtttatat atgttttatt ttgtcttcaa ccatcaataa agtgttttct
     6061 gtgaaa
//
LOCUS       XM_032618522            6413 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uveal autoantigen with coiled-coil
            domains and ankyrin repeats (UACA), transcript variant X2, mRNA.
ACCESSION   XM_032618522
VERSION     XM_032618522.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6413
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6413
                     /gene="UACA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 113 long SRA reads, 4
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746795"
     CDS             548..4753
                     /gene="UACA"
                     /codon_start=1
                     /product="uveal autoantigen with coiled-coil domains and
                     ankyrin repeats isoform X2"
                     /protein_id="XP_032474413.1"
                     /db_xref="GeneID:116746795"
                     /translation="MMNCWFSCAPKNRQAADWNKYDDRLMKAAEKGDVEKVSSILAKK
                     GVNPGKLDVEGRSAFHVVASKGNLECLNAILIHGIDITTSDTAGRNALHLAAKYGHAL
                     CLQKLLQYSCPTERVDLQGRTALHDAAMADCPSSIQLLCDHGASVNTRDVDGRTPLVL
                     ATQMCRPSICQLLIDRGADINSRDKQNRTALMLGCEYGCKDAVEVLIRNGADVTLLDA
                     LGHDSSYYARIGDNLDILTLLKTALENTSKGREVWKKGPSLQQRNLTQMLDEVNMKSD
                     QREHQNIQDLEIENEDLKERLRKIQQEQRILLDKVNGLQLQLNEEVMVADDLESEKEK
                     LKSLLAAKEKQHEESLRTVEALKNRFKYFESNHLGSGSHFRKEDMLLKQGQMYMTDSQ
                     CTSTGMPAHMQSRSMLRPLELALPNQTSYSENEILKKELEAMRTFCDSAKQDRLKLQN
                     ELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLAL
                     KEHLTSDAATGNHRLTEELKDQLKDMKVKYEGASAEVGKLRNQIKQNEMLVEEFKRDE
                     GKLMEETKRLQKELSMCELEREKRERKVTEMEGQLKDLSSKLALSIPAEKFENMKSLL
                     SNEVNEKAKKLIEMEREYERSLSEIRPLKRELENLKAKLAQQVKPEEHEQLKSRLEQK
                     SGELGKRISELTSKNQTLQKEIEKVYLDNKLLNQQVHNLTTEMKNHYVPLKVSEEMKK
                     SRDVIVDDLNKKLSDVTHKYTEKKLEMEKLLMENASLSKNVSRLETVFIPPEKHEKET
                     MALKSNIVELKKQLSELDKKCGNDQEKIYSLTSENTDLKKIMINQYVPMKTHEEIKTA
                     LSSTLDKTSRELVDVKKKCEDINQEFVKIKDENEILKRNLENTQNQVKAEYISLREHE
                     EKMSAVRKSMKKVQDNSAEILANYKKGQEEIVTLHAEIEAQKRELDTIQECIKLKYAP
                     IISFEECERKFKATEKELKEQLSEQTQKYHISEEEAKKCKQENDKLKKEILTLQKDLK
                     DKNVLAENSHEMERALSRKTEELNRQLKDLLQKYTEVKNEKEKLAEENAKQTSEMLAA
                     QTLLQKQHVPLEQVEALKKSLNGTIEMLKEELKSKQRCYEKEQQTVTQLRQMLENQKN
                     SSVPLAEHLQIKEAFEKEVGIIKASLREKEEESQNKTKEVSKLQSEIQNTKQALKKLE
                     TREVVDLSKYKATKSDLETQISNLNEKLANLNRKYEEVCEEVLHAKKKELSAKDEKEL
                     LHFSIEQEIKDQQERCDKSLTTITELQRRIQESAKQIEAKDNKITELLSDVERLKQAL
                     SGLSQLTCASRSPSKRQSQLIGSLQHQVKSLQQQLADADRQHQEVIAIYRTHLLSAAQ
                     GHMDEDVQAALLQIIQMRQGLVC"
     misc_feature    590..1315
                     /gene="UACA"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    620..703
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    707..802
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    809..901
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    908..1000
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(911..913,923..928,935..943,947..952,962..964,
                     971..973,998..1000,1004..1006,1010..1012,1022..1027,
                     1034..1042,1046..1051,1061..1063,1070..1072,1097..1099,
                     1103..1105,1109..1111,1121..1126,1133..1141,1145..1150,
                     1160..1162,1169..1171,1196..1198)
                     /gene="UACA"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    1004..1099
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    1103..1198
                     /gene="UACA"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <1175..>1510
                     /gene="UACA"
                     /note="SH3 domain-containing protein; Provisional; Region:
                     PRK10884"
                     /db_xref="CDD:182809"
     misc_feature    2123..4429
                     /gene="UACA"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
        1 acagtatatt cttagctgct cttctctatc tatcactcag ctgtcaaggc ctatggaatc
       61 taaaatagat cctgaccaat gggagacagc ctacacactg cttacgggat gatttggatg
      121 tggacagctt tatcgtgcac agatgctggt ctgtgttgca gtgttgaggc ggcaggatgc
      181 agagttgaag ttttccagtg gagtctctga aaagggacag ctttgaaaga cagcttctaa
      241 agaataacaa ataggaggag ttacagtacc tgatttgggg actgctctta ctcaagtgct
      301 gcacagcaag gaagataatt ttcaggcgtt atgaaggcgg agaaggattc tgaagacgag
      361 gaaaatatcg ttagagatcc aagctaagtg tagcccagca tgaagactgc agaacaggaa
      421 gagttgtaac gagaaggacc gagtcacttg ttaggcgttt ctctgagggc ttgctttgtg
      481 agctacagag atttgtaact taatgcgaag tagtttgctg ttagcaacaa gaaactaaat
      541 cctgtctatg atgaactgtt ggttttcgtg tgctcctaag aacagacaag cagcagattg
      601 gaacaaatat gatgaccgat tgatgaaagc agcagaaaag ggagatgtag aaaaagtgtc
      661 ctcaatcctt gctaaaaagg gggtcaatcc aggcaaacta gatgtggaag gcagatctgc
      721 ctttcatgtt gtagcctcaa aggggaatct tgagtgtttg aatgccatcc tcatacatgg
      781 aattgatatt acaaccagtg acaccgcagg gaggaatgct cttcacctgg ctgcaaagta
      841 tgggcatgca ttgtgtctac aaaaacttct acagtacagt tgtcccactg aacgtgtaga
      901 cctgcaggga agaactgcac ttcacgatgc agctatggca gactgtcctt ctagcataca
      961 gctgctctgc gaccacgggg cctcagtgaa taccagagat gtagatgggc ggacgccact
     1021 tgttctggct actcagatgt gtaggccatc aatatgtcaa ctgctgatag atagaggggc
     1081 ggatattaat tccagagaca aacaaaacag gactgctctc atgctaggtt gcgagtatgg
     1141 ttgcaaagat gcagtagaag tcttaatcag aaatggtgct gatgtaacct tgctggatgc
     1201 ccttggccat gatagttctt actatgcaag aattggtgac aatctggaca ttctaacctt
     1261 actgaagact gcattagaaa ataccagcaa agggagagaa gtttggaaga aaggaccatc
     1321 tttacaacag cgaaatttga cgcagatgct agatgaagta aatatgaaat cagatcagag
     1381 ggagcatcaa aacattcagg atctggagat tgaaaatgaa gatctgaaag agaggttgag
     1441 aaaaattcag caggaacaga gaatattatt ggataaagta aatggtttac aactacagct
     1501 gaatgaggaa gtaatggttg ctgatgatct ggaaagtgag aaagaaaagc tgaagtccct
     1561 tttggcagct aaagaaaagc aacatgaaga aagcctaaga actgttgagg ctctgaaaaa
     1621 tagattcaag tattttgaga gcaatcattt aggatcggga agtcatttca gaaaagaaga
     1681 tatgcttctt aaacaaggtc aaatgtacat gacagactca cagtgtactt ccacaggtat
     1741 gccagcccat atgcaaagca gatctatgtt aagaccacta gagctggcct tacctaatca
     1801 aacctcatat tcagaaaatg aaattttaaa gaaagaatta gaagcaatga gaactttctg
     1861 tgattctgca aaacaagaca gactcaagct ccaaaacgaa ctggctcaca aggtggcaga
     1921 gtgcaaagcc ttagcattgg aatgtgaaag ggtcaaagag gattcagatg agcagataaa
     1981 gcaactagaa gacgccttga aagatgttca gaagagaatg tatgagtcag aaggtaaagt
     2041 gaaacaaatg cagacacatt ttcttgccct gaaagagcac ctaacaagtg acgcagctac
     2101 tgggaaccac agactgacag aggaactgaa ggatcagttg aaagacatga aagtgaaata
     2161 tgaaggtgcg tctgcagaag tggggaaatt aagaaaccaa atcaaacaaa atgagatgtt
     2221 agtcgaagag tttaagaggg atgaaggcaa gctaatggaa gagactaagc gactgcagaa
     2281 ggaattgagc atgtgtgaac tggagcgaga gaagagagag agaaaggtca ccgagatgga
     2341 aggccagtta aaggacttgt catccaagct ggccctttcc attccagcag agaaatttga
     2401 aaacatgaag agcttgttgt caaatgaagt aaacgagaag gcaaaaaaat taatagagat
     2461 ggaaagggaa tatgaaagat cacttagcga aattagaccg ttaaagagag aacttgagaa
     2521 tttgaaggcc aaactggctc agcaggtcaa gccggaagaa catgagcagc tgaagagcag
     2581 attagagcaa aagtcaggag aacttgggaa gagaatcagt gagttaacgt cgaaaaatca
     2641 gacactacaa aaggagatcg aaaaggtcta tctggataat aagctcctca accaacaagt
     2701 gcataactta acgactgaaa tgaaaaatca ttacgtccct ttaaaagtaa gtgaagaaat
     2761 gaaaaagtca cgtgatgtaa ttgttgatga tttgaataaa aagctttcag atgtgacaca
     2821 caaatataca gaaaagaagt tggaaatgga gaaattgctg atggaaaatg ccagtttaag
     2881 taagaacgtt agccgcctgg aaactgtgtt catacctcca gagaaacacg aaaaagagac
     2941 aatggccctg aaatctaata tcgttgaact taagaagcag ctatctgaac ttgataaaaa
     3001 atgtggtaac gaccaagaga aaatatattc gctcacatct gaaaacactg acttgaaaaa
     3061 gataatgatt aatcagtatg tgccaatgaa aacccatgaa gagattaaaa ctgctttgag
     3121 tagcacattg gataaaacca gcagagaatt agtagacgtg aagaagaagt gtgaagatat
     3181 aaatcaagaa tttgtgaaaa taaaagatga gaatgaaata ttaaaaagaa acctggagaa
     3241 cactcagaac caagtaaaag ctgagtacat aagcctaaga gagcacgagg aaaagatgag
     3301 tgctgtgagg aagagcatga agaaggtcca ggacaacagt gccgaaatat tggctaacta
     3361 caaaaaaggc caggaggaga ttgtaacact gcatgccgag atcgaggccc agaaaaggga
     3421 acttgacaca atacaagaat gcatcaagct aaaatatgcc ccaattatca gctttgaaga
     3481 gtgtgagaga aaatttaaag ctactgagaa agaactaaaa gaacagttat ccgagcagac
     3541 acaaaagtat cacatcagcg aagaagaggc caagaagtgc aagcaagaaa acgacaagtt
     3601 aaagaaggag atcctcactc ttcagaagga tctaaaggat aaaaatgttc ttgctgagaa
     3661 ttctcatgaa atggaaagag cattaagcag aaaaacagaa gagctgaaca gacagttaaa
     3721 agacctgttg cagaaataca cagaggtaaa gaacgagaaa gagaagctgg cagaggaaaa
     3781 tgccaagcag acctctgaga tgcttgcagc acaaactctt ttgcagaaac agcatgttcc
     3841 actggaacag gttgaggccc tgaagaagtc tcttaatggc acaattgaga tgcttaagga
     3901 agaactgaag agtaagcaaa ggtgttatga gaaagagcag cagacagtga cccaactgcg
     3961 gcagatgctg gagaatcaga agaactcctc tgtgcccctg gcagagcatt tgcagattaa
     4021 ggaagcattt gagaaagaag ttggaatcat aaaagctagc ttgagagaaa aggaagaaga
     4081 gagccaaaac aaaaccaaag aggtctccaa actccagtct gagattcaga atacgaaaca
     4141 agcattaaaa aaattagaga ctagggaggt ggttgatttg tctaaatata aagcaacgaa
     4201 aagtgatttg gagacacaga tttccaactt aaatgaaaaa ttggccaatc tgaataggaa
     4261 gtatgaggaa gtatgtgagg aggttttgca tgccaaaaag aaggaactgt ctgcaaaaga
     4321 tgagaaggaa ttgctccatt tcagcattga gcaagaaatc aaggatcagc aggaacgatg
     4381 cgataagtcc ttaacaacaa tcacagagtt acagagaaga atacaggaat ccgccaaaca
     4441 gatcgaagct aaagataata agataactga actgctcagc gatgtggaaa gactaaaaca
     4501 agcactcagt ggcctctccc agctcacctg tgcgagcagg agtcccagta agaggcagag
     4561 tcagctgatt ggcagtctgc agcaccaggt caagtccctg cagcagcagc tggcggatgc
     4621 tgacagacag caccaagaag taattgcaat ttatcggaca caccttctta gtgctgcaca
     4681 gggtcacatg gatgaagatg tgcaggcggc cttactccag atcatacaga tgcggcaagg
     4741 gcttgtgtgc tagcatcagc acccaccagc cgatggtggc tttccctgct ggtgctgagc
     4801 attctgtgtg caactccatg gcctttctgg acctcacttt ccctcagctt tccctgctgg
     4861 tgctagtata attaaaataa agtatatttt gatccattag taggttttta acttagacaa
     4921 atacgttact gagtttttca atatcagttc aaatcttata ttctttatat gttaatttta
     4981 caattagata aacaacgtaa cactttgcct tggattggct acttattttt aattgattga
     5041 gtactcaata aaacatgagt catctgagtg ggtccatatg aagagggatt aggctgaaat
     5101 aattattaaa gttttcttcc agagaaatta attgggttgg tagcaacttt taagtggatc
     5161 aagagatctt tcagatgttc agtcgagcca tgagacctaa tgcagtttca aggaatgcat
     5221 ggtaacttgg ctggccaagt tccattttta ttaaagtaac ttaatgagtg cttttgactt
     5281 cttttggagg tacagatttt ttttctctct acactagtaa gttttatgcc ttttaaaata
     5341 aacttctttt cacaaatggt ttgcggtgct aaattacatt taggctaaga acaggcaagg
     5401 gtggaatata tcaggaattt ataataaaat ttcctcataa tctccgcaac ggtatcttaa
     5461 ttttcacttg taatgacttt tctttttaca gtatgacgag aactatgata aatggtatac
     5521 tggatttttc aaagtgtcaa aaatgttaga ctttttttag taattactct gacatttgct
     5581 actgtagtag caaagcactc attatatatg catcctccaa atgttttgta cttatttata
     5641 ggaaaattgc actaatgaga ttaataatgt gaaatgcaat ttttttgcaa aattagcatt
     5701 agaaaattga atttagaaga cagatcttta aggttttaga caaaagtgca ataacattgt
     5761 aaactgtaag aatatagata gcaagaaaat aatgaaattg ggcatgttta tagtaaatat
     5821 tataaccaac catttttatt aactacatct cattaaggaa agtttatatg ttttgttatt
     5881 ttattaatat tttatttaca attcagattg aaaatgacta atttgactgt tagcaaataa
     5941 actaaacaaa tgaatcattg cagccaagct ttttaaattg caaaatgtgc cttagcaata
     6001 atctttgagc atcctgaacc agatttttga tcccattttt gtgtaataac aaggacgaag
     6061 gaccatcaaa atatcaataa cttattccac caaagagtaa gccattgtgt ttcttcagta
     6121 tagaaacaga agcgaaaagt cagcaacgga tttcttttga attctttagg taggtatata
     6181 caataaacaa tgtttggatt ctttaatttt tatatttaat gttgtccttc agcatgagct
     6241 ctgtgtcatg agttttaggt cacctattga agctctagag tagagaagtt cttaactgaa
     6301 tacttacatt tcagtgttat attttcctta ttaggggtag gaaaggaacc cctatatggg
     6361 tttatatatg ttttattttg tcttcaacca tcaataaagt gttttctgtg aaa
//
LOCUS       XR_004347885            5432 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746823
            (LOC116746823), ncRNA.
ACCESSION   XR_004347885
VERSION     XR_004347885.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5432
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5432
                     /gene="LOC116746823"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 96% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116746823"
     ncRNA           1..5432
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746823"
                     /product="uncharacterized LOC116746823"
                     /db_xref="GeneID:116746823"
ORIGIN      
        1 gttattccct ttgtatatac attttatttt gtaattatta gatgattatt gtcaatggaa
       61 taacgttttg tgaaaatgaa catacttgga gattttgctg aagtgaaggc aaaaaataaa
      121 agaaataaat gtaaaataat acatgagcta tggctctcct tattttaata cttatccaaa
      181 tatcaccagc ccattaatgg aacagccaga tgcacacagt gataattaag ttcatttgtc
      241 ttcgatggaa gactttcagt catatagaag ccacaacttc attaactttt tatgtcttgt
      301 tatgatgagg atatttttgt tgaggtagag agagcataga gcatcatatc cgatgtaaca
      361 tttggcttgt gatttaactt ttgcccatgt acgcacgtga cgtgtagccc tcaggttcgg
      421 gcaggcctgc ttcctccttt ctttacacac agccctagaa ggacctaggt tctggtgggc
      481 agcgagtgcc cagaagctgt gtggaccggg ccacagctga ctcagtgtgc gtgtgtctcc
      541 aggatcaagg tcacaccaaa gccaagggag ggaagagccc caggaacctc tccagatggc
      601 ctctgtggga ggcctggaaa agctttctct atgcacaccc tccggtgtct actgagctgg
      661 gaacatagat gctgggaagg cactcaagct gcgggcctgc ccaggggttt cagttttagc
      721 tctgccacct tctggagagg taactccaga agggcaaatt tcctgaacct ctctgatctg
      781 tttcaacatg tgtaaggtgg gaatactcat tctcactttt cagccttgtt gtgaaaactg
      841 gaagcttgta tttaaaactc atagcatggt cccttggatg tggcttaata catgttaacc
      901 catgtttttt ggacagtgaa actgaagaaa gacgttaaac aagaggctaa agtcatcctg
      961 gtggttaata gaaggaggaa cccaggcatt ttaatgttcc ttccattcgc tgggccctga
     1021 taacctgccg ttctttgaaa gcccacctgc tctcctgccc acacccaggt taggaaggat
     1081 gcctgccctg cgaggcgtcc tggtctgagc accagttcac tttccttgga atttagctct
     1141 gaggatttac agccagggcg ggcacaagct ggaggtcccc ttacctgtaa gttattccac
     1201 cagtaattag atttctttct actgtgggga gccagcctgt gtaaattcac agaaacctgg
     1261 gaacagatga tataagggtc accggagcct ccttgctgcc taaaatgcaa catccaggaa
     1321 aatgatttct ctgggcacat aagttactag ggtcccgggg taaccatagc tcaggctctg
     1381 ataattccct taatgctgtg ttcagtgatg gagtgttcat ggcccccttg gcagcccgcc
     1441 tgcgtggccc tgctctctga ctgcaagagc ctcagtgaca cctgctgttg ccgagggagg
     1501 tgatatatgt agagggagga cgggcagagg ggagggaaga cctctccttt cccagcccct
     1561 tttcttccag gccagtctga ctcaggttca gagaccctta gtccttctgg tgagccattt
     1621 ggagggcaaa gacactttga accatagcac aaatcactag tcatttgcaa gaggataaaa
     1681 ttaggtacct acgtcatact acagtaaaaa attctagatg gattaaagat ttgtgcatta
     1741 aatatacagt actaacaaat taaaaggcaa tataggacta tgtatatgta agattgttta
     1801 gttttaccta taatctgagc tgtcatcctt ttctaatata gttttacaga taatctcaca
     1861 tatatagtct tacaagtcca ggtagagggc atatgtcata tatctcagtc tcgatcctta
     1921 tatctctata tcttggggtg gggaagacct ttctaagtct ggcaccaaat ccagaagtca
     1981 acaaagaaaa atttggcata ttggaccacc taaaaattta aaaaagcaaa acaaaactgt
     2041 accgtgaaag gcaccataaa taaaacataa atacataaat gacagcctgg gagaaactat
     2101 ttgctataca ttctagcagg aaaactgtaa atatccatac tatagcaagt attcctccaa
     2161 atcaatcaga aacaacatag atgaacaaat gcacgattca cacatacaca cacacactat
     2221 acagatggtc cattcaagaa gaaaaaaagt ttagggcttc cctggtggcg cagtggttga
     2281 gaatctgcct gctaatgcag gggacacggg gtcgagccct ggtctaggga agattccaca
     2341 tgccgcggag caactaggcc cgtgagccac aactactgag cctgcgcgtc tggagtctgt
     2401 gctccgcaac aagagaggcc gcgatagtga gaggcccgca cgccgcgatg aagagtggcc
     2461 cccgcttgcc ataactagag aaagccctcg cacagaaacg aagacccaac acagcaaaaa
     2521 taaattaatt aattaataaa ctcctacccc caacatctta aaatcgcaag aggagttaga
     2581 atgagaaatt gtttaaaaga agaaaaaaaa tttaattatt tgatatctaa aactggaaga
     2641 aaaatcattg tttgatctca ctaataatta aagaaatatg gatgcaaaca acatcgtggc
     2701 attgttttca tttttgccta cccagttaaa aagactgata gccttcagaa ctgctgaggg
     2761 tgaagaaacg agctcgcaca cactgttggt aggaatgaaa atcctcacaa cctttttgaa
     2821 ggtaatatct caatagatat ataaacttaa aatgcgctta ctgaataacc ccccgatctc
     2881 tcctctagga atttatcctc ccaaaccatg gcatgaatga gtaaagatgt aagtgcaagg
     2941 gcattcattg taccatggct tacaagagca aacatttgta caaatttaaa tttccacggc
     3001 agagcatggt atatctgtgt agtggaatcc tcttcaactc ttaacaagaa ggtagatccg
     3061 tgtagcagga ggtaacattt ttctgagtat ttgctaggca ctgttctgag tgcttcccat
     3121 catgaccttg tttaactcac tcaggtcttc atgaagtaga tgatgttgtc gtcatccaca
     3181 cgttgcagaa gaggcacaga gaggttatta acctccacaa gatcacacag ctgtgaaaag
     3241 tcagagctgg tatttgaacc gggcagtgag gttcccgaga caccaaccag gaaggagggg
     3301 tcactgataa aagttgtgtt aagtgataaa gcaagttgca gaaaaatata gcataactac
     3361 attttggtga aaatacatgt gactatatat ataatatgta ctatttatat gtatgttgca
     3421 ttacaataat tatggaaagt ttaatttggt gggagtgatt gaaggggcag atttattttc
     3481 ttccgaaaaa cggtgggatt aaagaaaata aaactagctc ccttctgttt ttatttttat
     3541 tttattaccc atgcccactt gacttgcatg aaataaaaat ggcccagtct ggtaacaaaa
     3601 atacattctt gaaaaataac atatcctgtt cacaccagta atgaaaaatc ccagtttggg
     3661 aaatacagct tttgatagtt attatttagc agtagataaa ttactttaaa taaaggcttt
     3721 aaaaatgatt taaaaggtag tatgtcatcg tcgtagaaaa ggtggaatta tagagctgag
     3781 agagtgaact ggtcatctag tgggttccag gaagctagga cctcctgctc tgtggtccgt
     3841 gctgcattta tttctctctt tgttttcttc ccagcatccc atttccatga catcctactc
     3901 caatccccca aacccagagc aagcctggtc aggggtgggg agtcaccatg cagttgaaga
     3961 gccctgaccc aaccaagtga tgtcacagga gctggtccag gatggagatc ctgtccattt
     4021 gctggtggcc agagtcacag ggtcacaaga cctccagctg cttgactcaa aagggcgccc
     4081 agggcatagc aggcacttgg gttctgtggt tctgtctggg gtgattttgc ttcctgagga
     4141 cttctggcaa tgtctggaga cacttttagt tcttaccact ggggagtggg tgctactgga
     4201 atccaggcag gagtgggcaa ggaaggctgc tgaacatact acagaccaag aattacccag
     4261 cccaaaatct ccataaggct gagatttcaa aacctgcccg ccattagatc ccctggtcgg
     4321 tcttgcagca ggagggatgg ggtcctgagg gtcccacctg tggaagttcc ttggccggta
     4381 tgcccctgtt ctagaggaga ggcaggtttc tccaaggcca ggtggagaga accagcccag
     4441 tccaccccag gcgctgcatt tcccaggagc tgggaggaat taagttataa tatacggacc
     4501 aacattgata cagtgtgtga caggtgacag agttcttcct ctgtgctggg gttcagtaca
     4561 ggctgggatc ctctgcacta ctgcccatat tgttggggtc ctggacaggt tggggggaag
     4621 gggaaaggct acatctgctt ctcattcttg catgaaacga gttccttgtc atcaactccc
     4681 cagtctccct ttgatcacaa ctctgacagt tcaaaccctt catgttattg caggttccac
     4741 ttgtgggtag gaggccttcc ccagcagatg tgaaggcaaa catactcttt ctccccatgc
     4801 tgtggtatcc tggagactgg tgagccggag ctaggatgcc atgacatcag gaaagcaatt
     4861 gagtggctca cagaatcccg aggaagaaga acactcggac cttctaaaga cacagggaca
     4921 aaaggaagaa ccacaagcaa aatcactccc cagggcttcc ctggtggcgc agtggttgag
     4981 agtctgcctg ccgatgcagg ggacacgggt tcgtgccccg gtccgggaag atcccacatg
     5041 tcacggagcg gctgggcccg tgagccatgg ccgctgagcc tgtgcgtccg gagcctgtgc
     5101 tccgcaacag gagaggccac agcagtgaga ggcccgcgta ccgcaaaaaa aaaaaaaaaa
     5161 aaaaaaaatc actccccaga actactgctg acgccctgct ggctcctgag tgtcacccag
     5221 tggcactgcg gctgtacagc tggtggaccc aggttgctgc ccagatcaga atcagggaga
     5281 cctgattcat agacctggca gacctctgct gggagactta ggggggtgac atgagtcctc
     5341 aaaggaccca ccagctggct aggtggggtc agctagagac agctttagga ttctggttta
     5401 ttgctggaaa taaaagagac aatgatggtc aa
//
LOCUS       XM_032618563            2886 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus prostaglandin D2 receptor (PTGDR), mRNA.
ACCESSION   XM_032618563
VERSION     XM_032618563.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2886
                     /gene="PTGDR"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746839"
     CDS             33..1118
                     /gene="PTGDR"
                     /codon_start=1
                     /product="prostaglandin D2 receptor"
                     /protein_id="XP_032474454.1"
                     /db_xref="GeneID:116746839"
                     /translation="MRPLFYRCCNTTSVEKGNSATMGGVLFGTGLLGNLLALGLLARS
                     GLRSRPRRSPHSPPSVFYVLVCGLTVTDLLGKALVSPFVLSAYAQNRSLRGLVPASGS
                     WLCQTFAFFMSFFGLASTLQLLAMALECWLSLGHPFFYRRYITPRRGALVAPVVGAFC
                     LAFCSLPFAGFGKFVQYCPGTWCFIQMVHEERSLSVLSYSVLYASLMLLLVLAIVLCN
                     LSAMRNLYAMHLRLRRLPRSGAKERAELAAGEREETPQPLEELDHLLLLALMTVLFTM
                     CSLPLIYRAYYGVFKAVHEKNVSVEEIEDLRALRFLSVISIVDPWIFIIFRTSVFRMF
                     FHKIFIRPLMYRNWHSNSCGTSMESSL"
     misc_feature    81..1037
                     /gene="PTGDR"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    87..161
                     /gene="PTGDR"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    216..284
                     /gene="PTGDR"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    348..416
                     /gene="PTGDR"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    483..533
                     /gene="PTGDR"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    618..689
                     /gene="PTGDR"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    822..890
                     /gene="PTGDR"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    936..1013
                     /gene="PTGDR"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
        1 agcctccgct ctggctcgcc gcgcctcccg ccatgaggcc gctgttctac cgctgctgca
       61 acaccacgtc ggtggagaag ggaaactcag cgacgatggg cggggtgctc ttcggcacgg
      121 gcctcctggg caacctgcta gccctggggc tgctggcgcg ctcggggctg cggtcgcgcc
      181 cgcggcgctc gccgcactcg ccgccctccg tcttctacgt gctggtgtgc ggcttgacgg
      241 tcaccgacct gctgggcaag gccctcgtga gccccttcgt gctgtccgcc tacgcgcaga
      301 accggagcct gaggggcctg gtgcccgcat ccggcagctg gctgtgccaa accttcgcct
      361 tcttcatgtc cttcttcggg cttgcctcga cgctgcagct gctggccatg gccctggagt
      421 gctggctctc cctggggcat ccctttttct accgacggta cataaccccg cgccggggcg
      481 cactggtggc gcctgtcgtg ggcgccttct gcctcgcttt ctgctcgctg cccttcgcgg
      541 gcttcgggaa gttcgtgcag tactgccccg gcacctggtg cttcatccaa atggtccacg
      601 aggagcgctc gctgtcagtg ctgagctact cagtgctcta cgccagcctc atgctcctgc
      661 tggtcctcgc catcgtgctg tgcaacctga gcgccatgcg caacctctac gcgatgcacc
      721 tgcggctgcg gcggctcccg cgctctggcg ccaaggaacg agcagagctg gccgccggcg
      781 agagggaaga gaccccgcag cccctggagg agctggatca cctcctgctg ttagccctca
      841 tgactgtgct cttcaccatg tgctccctgc ctttaattta tcgtgcttac tatggagtgt
      901 ttaaagctgt tcacgagaaa aatgtaagtg ttgaagaaat tgaagacctc cgagccttac
      961 gctttctctc tgtgatctcc attgtggacc cttggatttt catcattttc agaacatcgg
     1021 tatttcggat gttttttcac aagattttca taaggcctct tatgtataga aactggcaca
     1081 gcaattcttg cggaactagc atggaatcca gcctgtgaca gtgtgttaac ctctctggta
     1141 aactcaggaa tatatcacat tttctggcaa agaaccatga tcaaaaaaat cttacaagtt
     1201 atatccttaa aagctatgtc ccataacaaa acatctaaat gtattttcaa aactattcga
     1261 tcgatcttaa taatgtgttg tcactcttta ttcaagaacc agttcagtgg ggtttttcat
     1321 tttgagtata atagcaacta caatttcata tattgtaaac aatgttaaaa gtcttaaagc
     1381 aatgatagta attattccat tgtttgtact tggtgtccct aattttttaa ggcggtcttg
     1441 agacctctgg gtctttattt aaattcagta gaaacaacac agtttacaat tatgtgatag
     1501 gtgttcttaa attttcttac cctctttatt tctagtggaa cctgatttgt ttattttgca
     1561 tcacaattgc ccctgtttaa ttctttcctt tgccaactga tacaagtata gcctgaatta
     1621 tagatgcttc tctgaaaagg gtgatagaaa atataactag gtgaggcgtt tggagggtcc
     1681 ttcccccagc caccctctgg gaaaacgctc accaccttgt gtgaagaggc gaagctgtaa
     1741 ataagtaaac gaaaggcaag atgtgactat ggtctacacc ctggagaaga aaaaattctt
     1801 tttaccctct gaagtccagt ttcttgtgtg ttgaggtagg ggtgtcagta ggcatgaaaa
     1861 tttggagtgg gctacaaaat gttgtttcag tttttggaac ctccattttg taggtttatc
     1921 aaaatagtgg attctttggt ggggagggat ttatggtctt tggaagacag ggatgtatga
     1981 cttcccagag agtgtgttta ctaagcatgg ctgtgacaca gccgggcatt cagcacaggg
     2041 acaagctcac tcgggactca gtcagcctca gctgagagca gtgacaatga ccttaacttc
     2101 tacatgttaa agccatattc tgcccttggt ggagacagta agaccttatt gaggttcctg
     2161 agagatacgc tttcaatctg gagcagaata tgtctcagat ggagcaccac caagcacttt
     2221 aattgtacat aatgtttaca aaggttagca acactatgac caaaagggaa aagtggggaa
     2281 aatacagctg cagccgttaa actaagcaag agactgtaga cccagcctgc agggaagaac
     2341 tttcaccttg ggtaaaagat gaaagttttt tcatgggggc gtcagagggg tttcagcatc
     2401 tgtggtgtac ctgacacact cagactctga gctggacatc tgaatagcct gaaaccccca
     2461 ttcagccatc ccttccaaag atcagagtat ttgccttatt ttcagcatag cagcagcccc
     2521 attttttcac ctctggttta tctcagaggt ggtattgacc tggaaataca tgtgtaattt
     2581 ttgtgtgtag caaaactgtg aaatggccaa attaggaata caggaattat aatctgagag
     2641 tatgatgtga tgaaaaatgc acttgttttc aagtttaact ctcgtttgta tatttaattt
     2701 gtaagtacct ttatgtgttt cattgtcaga ggaagtgcat ctgtttcatg ctctcctttt
     2761 ggaaggtgtg ttatgatcat tatcaagatc atttgaaaag ttcccagata catcaataaa
     2821 cataacttta tgatattttg caaagaaaat tacttttctt caaatgaaat aaaagggttt
     2881 agtttt
//
LOCUS       XM_032618574            5910 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X1, mRNA.
ACCESSION   XM_032618574
VERSION     XM_032618574.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5910
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5910
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 62 long SRA reads, 3
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746846"
     CDS             507..3368
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X1"
                     /protein_id="XP_032474465.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGT
                     TVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGP
                     IQDHTDAPIYLAVVPGLPKPGGTPAALDTQSFAKRGDGNFIYSQADENQKGKVARLVS
                     PVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRV
                     LLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHIPQEDCTKPADLDKKNPESKIDE
                     TGSTPGYQGTGDGDENISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACW
                     HNGMSERNLSALENYNFELVDGVKLKKDKLNPQSTYSEA"
     misc_feature    585..926
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(612..614,618..620,624..626,708..710,726..728,
                     837..839,909..911,915..917,921..926)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    945..1298
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(969..971,975..977,981..983,1062..1064,1077..1079,
                     1209..1211,1281..1283,1287..1289,1293..1298)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1335..1775
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1452..1454,1536..1538,1563..1565)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    1809..2252
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1938..1940,2013..2015,2034..2036)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2454..3023
                     /gene="NRP1"
                     /note="MAM domain, meprin/A5/mu; Region: MAM; pfam00629"
                     /db_xref="CDD:459878"
     misc_feature    3129..3365
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 tggtgaaaca actccgtctc ccgctcatct tttcattgct tgctcctctc cttcgcgcag
       61 acacctcgga cctcccctgg gcgccagctc ctcggctcca acgcgtccag aaacaagccg
      121 gatttttttt ttttctttct ttctggaaat tggcgttggt gtgcgtttct ctacgtctct
      181 cctcctccca ccaccaccac cacccccccc tttttttttc tgagacatgg cccgggcagt
      241 ggctcctgga agaggaacaa gtgtgggaaa agagagagga aaccggagct aaatgacagg
      301 atgcaggcga cttgagacac aaaaagagga gggtttctct cggatcacgg cattgcctcg
      361 ccgctttcct ttctccaaga cggactgagg attttacagc tctgggagga gtggaagcgc
      421 tccggattgt tgagatcgcc ccggtgctct gttttccctg cacgttcggt tctcccgcgt
      481 ctgcccggga acccagcgaa gggaggatgg agagggggct accgctcctg tgcgccgcgc
      541 tcgccctggt cctctcggcg gccggcgctt ttcgcaacga taaatgtgga gatactataa
      601 aaatcgaaag ccccgggtac cttacatctc ctggttatcc tcattcttat cacccaagtg
      661 aaaaatgtga atggctgatt caggctcctg acccatatca gagaattatg attaacttca
      721 accctcactt cgatttggaa gacagagact gcaagtatga ctatgtggaa gtcatcgatg
      781 gagagaatga aaatgggcgt ttatggggaa agttctgtgg aaagattgcc ccttctcctg
      841 tcgtgtcttc agggccattt ctctttatca agtttgtctc tgattatgag acacacgggg
      901 caggattttc catacgttat gaaattttca agagaggtcc tgaatgttcc cagaactaca
      961 caacacctag tggggtgata aaatccccag gattccctga aaaatatccc aacagcctag
     1021 aatgcaccta tattatcttt gcaccaaaga tgtcggagat tatcctggaa tttgaaagct
     1081 ttgacctgga ggctgactca aatcctcctg gggggatgtt ttgccgctat gaccggctag
     1141 aaatctggga tggattccct gatgttggtc cccacattgg gcgttactgt gggcagaaaa
     1201 caccaggtcg aatccactcc tcatccggca tcctgtccat ggttttctac acggacagcg
     1261 ccatagccaa agaaggcttc tcggcaaact acagtgtctc acaaagcagt gtttcagaag
     1321 acttcaagtg tatggaagct ctgggcatgg aatccggaga gattcactct gaccagatca
     1381 cagcttcttc ccagtacagc accaactggt ctgccgaacg ttcccgcctc cactatcctg
     1441 agaatgggtg gacccctgga gaggattcct acagagagtg gatccaggta gacctgggcc
     1501 ttctgcgctt tgtcactgct gtcgggacac agggagctat ttcaaaggaa accaagaaga
     1561 aatactatgt caagacatac agaatagaca ttagctccaa cggggaagac tggatcacca
     1621 taaaagaagg aaataaacct gttatctttc agggaaacac caaccccaca gatgttgtga
     1681 ttggagtttt ccccaaaccc ctgataactc gatttgtccg aatcaaacct gtgacttggg
     1741 aaactggcat atctatgaga tttgaagtct atggctgcaa gataacagat tatccttgct
     1801 ctggaatgtt gggtatggtg tccggactta tttccgactc ccagatcaca gcatccaacc
     1861 aaggggacag gaactggatg cctgaaaata tccgcctggt gaccagccgc tcgggctggg
     1921 cactgccgcc cgccccgcac ccgtacgtga acgagtggct tcaggtggac ctggcggagg
     1981 agaagatcgt gcggggcgtc atcattcagg ggggcaaaca ccgggagaac aaggtgttca
     2041 tgaggaaatt caagatcggg tacagcaaca acggctcgga ctggaagatg gtcatggacg
     2101 acagcaagcg caaggccaag tcttttgaag gcaacaacaa ctatgacaca cctgagctac
     2161 ggacatttcc acccctttcc acacgattca tcaggatcta ccctgagaga gccactcacg
     2221 gcggactagg gctacggatg gagctgctgg gctgtgaggt ggaagcacct acagctggac
     2281 cgaccactcc caatgggaac ctggtggatg aatgtgatga cgaccaggcc aactgccaca
     2341 gcggaacagg tgatgacttc cagctcacag gtggtaccac tgtgctgacc acagaaaagc
     2401 caaccgtgat agacagcact atacaatcag agtttccaac atatggtttt aactgtgagt
     2461 ttggctgggg ttctcataag acgttctgtc actgggagca tgacagtcac gtgcagctca
     2521 gatggagtgt gttgaccagc aagacgggac cgattcagga tcacacagac gccccgattt
     2581 acttggcagt ggtgccaggt ctgcccaaac caggaggaac ccccgcagca ctagacacac
     2641 aatcatttgc caagagagga gatggcaact tcatctactc ccaagctgat gaaaaccaga
     2701 aaggcaaagt ggctcgcctg gtgagccctg tggtttattc ccagaactct gcccactgca
     2761 tgaccttctg gtatcacatg tctggttcac acgtgggcac gctgagggtc aaactgcgct
     2821 accagaagcc agaggaatat gaccagttgg tctggatggc catcggacac caaggggacc
     2881 actggaaaga ggggcgtgtc ctactgcaca aatctctgaa actttaccag gtgatttttg
     2941 agggtgaaat cggaaaaggc aaccttggcg ggattgcagt ggatgacatt agtatcaata
     3001 accacatccc tcaagaggac tgcacaaaac cagcagacct ggataaaaag aacccggaaa
     3061 gtaaaatcga cgaaacaggg agcaccccag gataccaagg cacgggagac ggtgatgaga
     3121 acatctccag gaagccgggc aacgtgttga agaccctgga ccctatcctc atcaccatca
     3181 tcgccatgag tgccctgggc gtcctcctgg gcgccgtctg cggggtcgtg ctgtactgtg
     3241 cctgctggca caacgggatg tcggaaagaa acttatctgc cctggagaac tataacttcg
     3301 aacttgtgga tggcgtgaag ttgaaaaaag acaaactgaa tccacagagt acttactcgg
     3361 aggcatgaag gcagacagag gtgaccaggc aagcaggaga gtggagcgga ggacagagct
     3421 tgagctgggg accggctgat ctttcactgt tcgggctggg aagtgcgtta atgatgccaa
     3481 gccaggtttt ctcaggagct tcgatgagtt cggccgacag acacgaacga cttagctgtg
     3541 ttaacaatcg gaatcctgta cagtcagctt ccttctgttg gtttcttttg aataatcaaa
     3601 tgctggtgtt gagaccaagt atgattgact taataattca tttggactcc cctttccctt
     3661 ctctctctcc ctcttctgga ttcttttcgg aaactgcaaa atccaagatg ctggcaccaa
     3721 gtgtattcag tggggccctt ttgacggaca tgctacctgc agcccagtgc ccagaatata
     3781 ttcgagtaac cacatttcag tggactcctg aagctggcct tgtgtatcat cgcccgcgtt
     3841 gtgcataggc aaagaaggag taggatgttt tcagttaaag taccgtagcc tcagtaccag
     3901 tctagcgtgt cagctctgtt tacgaagcaa taccgtcaga tttcctcgat gttttccagt
     3961 gttgtactca accttgtgct gtgaactcca tacagaaaac tgtgccatca ccaaacactg
     4021 ctggcaactg ggtgtgatgc caacaaccac aacgaagaat ccttggcact ggctggtcta
     4081 cgtcctctca agtgcctttt tgtttgtact ggttctcatt gtgttacatt aacccgccct
     4141 gtttctcgct ggtgaaagcc ctcctcttga atcagaccct ggtggcccac tgactaagaa
     4201 gaaagtatat tttagtgtga gatatcagcc tccgggtagg caagggctcc gaagatttgg
     4261 caacgtggct taattgttct gctttttccg tagttcaatt tcatgtctct tgaccctttt
     4321 gtataaagct gcaatattct cttactgttc tttcatatgg aatgtatttt caaatgtaaa
     4381 ctctttctct cctatctctc tgtctttttc ctctcttagg atttaagcat ttgccattat
     4441 ccagaaaaga aacttgcagc tttaacctgc tggtaatggc gaacaatttt actagacttt
     4501 atgttggaaa ataaataaat aagggaaatt cctaactttg ccctccaaag tctaactttg
     4561 gtttccttgt taactggtta aagtgacagt atcttttttc ctaagccatt tgtctgtcta
     4621 ttccaatcaa aatgatcttc aatagaaatg tttgcattta ataaaaatag tgataagttg
     4681 agagaagaaa taatactaat tggctttcaa gtgagaccca aaggaataga gttctcccca
     4741 tatccaaaaa caggagattt ttacatccaa atacacaaaa atgacccgtg agagccttct
     4801 tgttttggta ttgagtcaga taagggaagt ggaagaaaga acagttaatt taagaaaacg
     4861 acaataaatc atggtgcctg gggatgaagt attttaagat gacagagggg aagaaaatga
     4921 gtaaagtcaa aacaaatgtt tttaaaaatt cagtctgcag caaccctgaa ataacagaga
     4981 cttgaatgaa tgcttctaga aacttccagt gcctcacaaa caaaaagcct gccttggggc
     5041 tgttaagacc taagcctcca atggcacaga gaagtaaata tcttatcagg cagcattgaa
     5101 ttaactcaaa gaagctttgg ttgttttccg tgtatttgtg ccatgcggcg ttgtaggtaa
     5161 gaacttcctc ccttccggca ctgctgtagg tctcactcga atatatttgt gggagtcaca
     5221 ttgcatcatg gaggggaaag tccattcatc ctggtctaat tgaattgaga atgccttttg
     5281 tttccaggaa agtattgatc actatgaaag aagaatagat tcttatcccc agaggcatcc
     5341 attcagccgt tataatcgta ccaggatgaa agcattaaga cttgatttac ctttaaggca
     5401 acagacttac agttgtcttc agccaaggaa aaatgatact gcaactttaa atttgaaagt
     5461 atcttgcact gataaatata tttaaaaatt atatgtttat aaagttatta atttgtaaag
     5521 gcagtgttac aaaatgttca gtttatattg ttttagattg tttcgtaatt ttaaaaggtg
     5581 taaaataaca tatttttttc tttattgaga tctataaaac tttctgtagt aaaatgtttt
     5641 cattttactg gtatattatt gcttcatgtt ttgtaccatc ataaaatttt gtgcaaattt
     5701 tttttacaga aatttttatt ttctatgaca atatgacact tgtaaattgt tgattcaaaa
     5761 tgaacagcga agccttaact ttaaatgaca tttgtattct cagacactga gttgcataaa
     5821 aaaccacaca gaactgaact gtaacttaaa ttccaaacta tgactactac attccaaaga
     5881 aacagttgaa ttaaacattt tcctaaaata
//
LOCUS       XM_032618584            6109 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X2, mRNA.
ACCESSION   XM_032618584
VERSION     XM_032618584.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6109
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6109
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 63 long SRA reads, 3
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746846"
     CDS             706..3567
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X1"
                     /protein_id="XP_032474475.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGT
                     TVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGP
                     IQDHTDAPIYLAVVPGLPKPGGTPAALDTQSFAKRGDGNFIYSQADENQKGKVARLVS
                     PVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRV
                     LLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHIPQEDCTKPADLDKKNPESKIDE
                     TGSTPGYQGTGDGDENISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACW
                     HNGMSERNLSALENYNFELVDGVKLKKDKLNPQSTYSEA"
     misc_feature    784..1125
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(811..813,817..819,823..825,907..909,925..927,
                     1036..1038,1108..1110,1114..1116,1120..1125)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1144..1497
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(1168..1170,1174..1176,1180..1182,1261..1263,
                     1276..1278,1408..1410,1480..1482,1486..1488,1492..1497)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1534..1974
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1651..1653,1735..1737,1762..1764)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2008..2451
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(2137..2139,2212..2214,2233..2235)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2653..3222
                     /gene="NRP1"
                     /note="MAM domain, meprin/A5/mu; Region: MAM; pfam00629"
                     /db_xref="CDD:459878"
     misc_feature    3328..3564
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 gacgactgcc ccctagctgg aaggcacacc agcttccacc ctccacggtc ccctctgacc
       61 cagaggagag gacaccagat cttgggtaac aatggagccc gcggcgcgcg gcgggcaccc
      121 gagcatgcca ggcgcccagc agcgcgcccc tttaccgggc agggaggccg ggtggggccg
      181 cagcacagcc tcgcccgcgc caatctactg actcggctct acgtggcagc gacactgccg
      241 accctcgcct ggctccggga cacctcggac ctcccctggg cgccagctcc tcggctccaa
      301 cgcgtccaga aacaagccgg attttttttt tttctttctt tctggaaatt ggcgttggtg
      361 tgcgtttctc tacgtctctc ctcctcccac caccaccacc acccccccct ttttttttct
      421 gagacatggc ccgggcagtg gctcctggaa gaggaacaag tgtgggaaaa gagagaggaa
      481 accggagcta aatgacagga tgcaggcgac ttgagacaca aaaagaggag ggtttctctc
      541 ggatcacggc attgcctcgc cgctttcctt tctccaagac ggactgagga ttttacagct
      601 ctgggaggag tggaagcgct ccggattgtt gagatcgccc cggtgctctg ttttccctgc
      661 acgttcggtt ctcccgcgtc tgcccgggaa cccagcgaag ggaggatgga gagggggcta
      721 ccgctcctgt gcgccgcgct cgccctggtc ctctcggcgg ccggcgcttt tcgcaacgat
      781 aaatgtggag atactataaa aatcgaaagc cccgggtacc ttacatctcc tggttatcct
      841 cattcttatc acccaagtga aaaatgtgaa tggctgattc aggctcctga cccatatcag
      901 agaattatga ttaacttcaa ccctcacttc gatttggaag acagagactg caagtatgac
      961 tatgtggaag tcatcgatgg agagaatgaa aatgggcgtt tatggggaaa gttctgtgga
     1021 aagattgccc cttctcctgt cgtgtcttca gggccatttc tctttatcaa gtttgtctct
     1081 gattatgaga cacacggggc aggattttcc atacgttatg aaattttcaa gagaggtcct
     1141 gaatgttccc agaactacac aacacctagt ggggtgataa aatccccagg attccctgaa
     1201 aaatatccca acagcctaga atgcacctat attatctttg caccaaagat gtcggagatt
     1261 atcctggaat ttgaaagctt tgacctggag gctgactcaa atcctcctgg ggggatgttt
     1321 tgccgctatg accggctaga aatctgggat ggattccctg atgttggtcc ccacattggg
     1381 cgttactgtg ggcagaaaac accaggtcga atccactcct catccggcat cctgtccatg
     1441 gttttctaca cggacagcgc catagccaaa gaaggcttct cggcaaacta cagtgtctca
     1501 caaagcagtg tttcagaaga cttcaagtgt atggaagctc tgggcatgga atccggagag
     1561 attcactctg accagatcac agcttcttcc cagtacagca ccaactggtc tgccgaacgt
     1621 tcccgcctcc actatcctga gaatgggtgg acccctggag aggattccta cagagagtgg
     1681 atccaggtag acctgggcct tctgcgcttt gtcactgctg tcgggacaca gggagctatt
     1741 tcaaaggaaa ccaagaagaa atactatgtc aagacataca gaatagacat tagctccaac
     1801 ggggaagact ggatcaccat aaaagaagga aataaacctg ttatctttca gggaaacacc
     1861 aaccccacag atgttgtgat tggagttttc cccaaacccc tgataactcg atttgtccga
     1921 atcaaacctg tgacttggga aactggcata tctatgagat ttgaagtcta tggctgcaag
     1981 ataacagatt atccttgctc tggaatgttg ggtatggtgt ccggacttat ttccgactcc
     2041 cagatcacag catccaacca aggggacagg aactggatgc ctgaaaatat ccgcctggtg
     2101 accagccgct cgggctgggc actgccgccc gccccgcacc cgtacgtgaa cgagtggctt
     2161 caggtggacc tggcggagga gaagatcgtg cggggcgtca tcattcaggg gggcaaacac
     2221 cgggagaaca aggtgttcat gaggaaattc aagatcgggt acagcaacaa cggctcggac
     2281 tggaagatgg tcatggacga cagcaagcgc aaggccaagt cttttgaagg caacaacaac
     2341 tatgacacac ctgagctacg gacatttcca cccctttcca cacgattcat caggatctac
     2401 cctgagagag ccactcacgg cggactaggg ctacggatgg agctgctggg ctgtgaggtg
     2461 gaagcaccta cagctggacc gaccactccc aatgggaacc tggtggatga atgtgatgac
     2521 gaccaggcca actgccacag cggaacaggt gatgacttcc agctcacagg tggtaccact
     2581 gtgctgacca cagaaaagcc aaccgtgata gacagcacta tacaatcaga gtttccaaca
     2641 tatggtttta actgtgagtt tggctggggt tctcataaga cgttctgtca ctgggagcat
     2701 gacagtcacg tgcagctcag atggagtgtg ttgaccagca agacgggacc gattcaggat
     2761 cacacagacg ccccgattta cttggcagtg gtgccaggtc tgcccaaacc aggaggaacc
     2821 cccgcagcac tagacacaca atcatttgcc aagagaggag atggcaactt catctactcc
     2881 caagctgatg aaaaccagaa aggcaaagtg gctcgcctgg tgagccctgt ggtttattcc
     2941 cagaactctg cccactgcat gaccttctgg tatcacatgt ctggttcaca cgtgggcacg
     3001 ctgagggtca aactgcgcta ccagaagcca gaggaatatg accagttggt ctggatggcc
     3061 atcggacacc aaggggacca ctggaaagag gggcgtgtcc tactgcacaa atctctgaaa
     3121 ctttaccagg tgatttttga gggtgaaatc ggaaaaggca accttggcgg gattgcagtg
     3181 gatgacatta gtatcaataa ccacatccct caagaggact gcacaaaacc agcagacctg
     3241 gataaaaaga acccggaaag taaaatcgac gaaacaggga gcaccccagg ataccaaggc
     3301 acgggagacg gtgatgagaa catctccagg aagccgggca acgtgttgaa gaccctggac
     3361 cctatcctca tcaccatcat cgccatgagt gccctgggcg tcctcctggg cgccgtctgc
     3421 ggggtcgtgc tgtactgtgc ctgctggcac aacgggatgt cggaaagaaa cttatctgcc
     3481 ctggagaact ataacttcga acttgtggat ggcgtgaagt tgaaaaaaga caaactgaat
     3541 ccacagagta cttactcgga ggcatgaagg cagacagagg tgaccaggca agcaggagag
     3601 tggagcggag gacagagctt gagctgggga ccggctgatc tttcactgtt cgggctggga
     3661 agtgcgttaa tgatgccaag ccaggttttc tcaggagctt cgatgagttc ggccgacaga
     3721 cacgaacgac ttagctgtgt taacaatcgg aatcctgtac agtcagcttc cttctgttgg
     3781 tttcttttga ataatcaaat gctggtgttg agaccaagta tgattgactt aataattcat
     3841 ttggactccc ctttcccttc tctctctccc tcttctggat tcttttcgga aactgcaaaa
     3901 tccaagatgc tggcaccaag tgtattcagt ggggcccttt tgacggacat gctacctgca
     3961 gcccagtgcc cagaatatat tcgagtaacc acatttcagt ggactcctga agctggcctt
     4021 gtgtatcatc gcccgcgttg tgcataggca aagaaggagt aggatgtttt cagttaaagt
     4081 accgtagcct cagtaccagt ctagcgtgtc agctctgttt acgaagcaat accgtcagat
     4141 ttcctcgatg ttttccagtg ttgtactcaa ccttgtgctg tgaactccat acagaaaact
     4201 gtgccatcac caaacactgc tggcaactgg gtgtgatgcc aacaaccaca acgaagaatc
     4261 cttggcactg gctggtctac gtcctctcaa gtgccttttt gtttgtactg gttctcattg
     4321 tgttacatta acccgccctg tttctcgctg gtgaaagccc tcctcttgaa tcagaccctg
     4381 gtggcccact gactaagaag aaagtatatt ttagtgtgag atatcagcct ccgggtaggc
     4441 aagggctccg aagatttggc aacgtggctt aattgttctg ctttttccgt agttcaattt
     4501 catgtctctt gacccttttg tataaagctg caatattctc ttactgttct ttcatatgga
     4561 atgtattttc aaatgtaaac tctttctctc ctatctctct gtctttttcc tctcttagga
     4621 tttaagcatt tgccattatc cagaaaagaa acttgcagct ttaacctgct ggtaatggcg
     4681 aacaatttta ctagacttta tgttggaaaa taaataaata agggaaattc ctaactttgc
     4741 cctccaaagt ctaactttgg tttccttgtt aactggttaa agtgacagta tcttttttcc
     4801 taagccattt gtctgtctat tccaatcaaa atgatcttca atagaaatgt ttgcatttaa
     4861 taaaaatagt gataagttga gagaagaaat aatactaatt ggctttcaag tgagacccaa
     4921 aggaatagag ttctccccat atccaaaaac aggagatttt tacatccaaa tacacaaaaa
     4981 tgacccgtga gagccttctt gttttggtat tgagtcagat aagggaagtg gaagaaagaa
     5041 cagttaattt aagaaaacga caataaatca tggtgcctgg ggatgaagta ttttaagatg
     5101 acagagggga agaaaatgag taaagtcaaa acaaatgttt ttaaaaattc agtctgcagc
     5161 aaccctgaaa taacagagac ttgaatgaat gcttctagaa acttccagtg cctcacaaac
     5221 aaaaagcctg ccttggggct gttaagacct aagcctccaa tggcacagag aagtaaatat
     5281 cttatcaggc agcattgaat taactcaaag aagctttggt tgttttccgt gtatttgtgc
     5341 catgcggcgt tgtaggtaag aacttcctcc cttccggcac tgctgtaggt ctcactcgaa
     5401 tatatttgtg ggagtcacat tgcatcatgg aggggaaagt ccattcatcc tggtctaatt
     5461 gaattgagaa tgccttttgt ttccaggaaa gtattgatca ctatgaaaga agaatagatt
     5521 cttatcccca gaggcatcca ttcagccgtt ataatcgtac caggatgaaa gcattaagac
     5581 ttgatttacc tttaaggcaa cagacttaca gttgtcttca gccaaggaaa aatgatactg
     5641 caactttaaa tttgaaagta tcttgcactg ataaatatat ttaaaaatta tatgtttata
     5701 aagttattaa tttgtaaagg cagtgttaca aaatgttcag tttatattgt tttagattgt
     5761 ttcgtaattt taaaaggtgt aaaataacat atttttttct ttattgagat ctataaaact
     5821 ttctgtagta aaatgttttc attttactgg tatattattg cttcatgttt tgtaccatca
     5881 taaaattttg tgcaaatttt ttttacagaa atttttattt tctatgacaa tatgacactt
     5941 gtaaattgtt gattcaaaat gaacagcgaa gccttaactt taaatgacat ttgtattctc
     6001 agacactgag ttgcataaaa aaccacacag aactgaactg taacttaaat tccaaactat
     6061 gactactaca ttccaaagaa acagttgaat taaacatttt cctaaaata
//
LOCUS       XM_032618593            5823 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X3, mRNA.
ACCESSION   XM_032618593
VERSION     XM_032618593.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5823
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5823
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 74 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746846"
     CDS             507..3281
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X2"
                     /protein_id="XP_032474484.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGT
                     TVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGP
                     IQDHTAGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVK
                     LRYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDD
                     ISINNHIPQEDCTKPADLDKKNPESKIDETGSTPGYQGTGDGDENISRKPGNVLKTLD
                     PILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDK
                     LNPQSTYSEA"
     misc_feature    585..926
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(612..614,618..620,624..626,708..710,726..728,
                     837..839,909..911,915..917,921..926)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    945..1298
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(969..971,975..977,981..983,1062..1064,1077..1079,
                     1209..1211,1281..1283,1287..1289,1293..1298)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1335..1775
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1452..1454,1536..1538,1563..1565)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    1809..2252
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1938..1940,2013..2015,2034..2036)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2439..2921
                     /gene="NRP1"
                     /note="Domain in meprin, A5, receptor protein tyrosine
                     phosphatase mu (and others); Region: MAM; smart00137"
                     /db_xref="CDD:214533"
     misc_feature    3042..3278
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 tggtgaaaca actccgtctc ccgctcatct tttcattgct tgctcctctc cttcgcgcag
       61 acacctcgga cctcccctgg gcgccagctc ctcggctcca acgcgtccag aaacaagccg
      121 gatttttttt ttttctttct ttctggaaat tggcgttggt gtgcgtttct ctacgtctct
      181 cctcctccca ccaccaccac cacccccccc tttttttttc tgagacatgg cccgggcagt
      241 ggctcctgga agaggaacaa gtgtgggaaa agagagagga aaccggagct aaatgacagg
      301 atgcaggcga cttgagacac aaaaagagga gggtttctct cggatcacgg cattgcctcg
      361 ccgctttcct ttctccaaga cggactgagg attttacagc tctgggagga gtggaagcgc
      421 tccggattgt tgagatcgcc ccggtgctct gttttccctg cacgttcggt tctcccgcgt
      481 ctgcccggga acccagcgaa gggaggatgg agagggggct accgctcctg tgcgccgcgc
      541 tcgccctggt cctctcggcg gccggcgctt ttcgcaacga taaatgtgga gatactataa
      601 aaatcgaaag ccccgggtac cttacatctc ctggttatcc tcattcttat cacccaagtg
      661 aaaaatgtga atggctgatt caggctcctg acccatatca gagaattatg attaacttca
      721 accctcactt cgatttggaa gacagagact gcaagtatga ctatgtggaa gtcatcgatg
      781 gagagaatga aaatgggcgt ttatggggaa agttctgtgg aaagattgcc ccttctcctg
      841 tcgtgtcttc agggccattt ctctttatca agtttgtctc tgattatgag acacacgggg
      901 caggattttc catacgttat gaaattttca agagaggtcc tgaatgttcc cagaactaca
      961 caacacctag tggggtgata aaatccccag gattccctga aaaatatccc aacagcctag
     1021 aatgcaccta tattatcttt gcaccaaaga tgtcggagat tatcctggaa tttgaaagct
     1081 ttgacctgga ggctgactca aatcctcctg gggggatgtt ttgccgctat gaccggctag
     1141 aaatctggga tggattccct gatgttggtc cccacattgg gcgttactgt gggcagaaaa
     1201 caccaggtcg aatccactcc tcatccggca tcctgtccat ggttttctac acggacagcg
     1261 ccatagccaa agaaggcttc tcggcaaact acagtgtctc acaaagcagt gtttcagaag
     1321 acttcaagtg tatggaagct ctgggcatgg aatccggaga gattcactct gaccagatca
     1381 cagcttcttc ccagtacagc accaactggt ctgccgaacg ttcccgcctc cactatcctg
     1441 agaatgggtg gacccctgga gaggattcct acagagagtg gatccaggta gacctgggcc
     1501 ttctgcgctt tgtcactgct gtcgggacac agggagctat ttcaaaggaa accaagaaga
     1561 aatactatgt caagacatac agaatagaca ttagctccaa cggggaagac tggatcacca
     1621 taaaagaagg aaataaacct gttatctttc agggaaacac caaccccaca gatgttgtga
     1681 ttggagtttt ccccaaaccc ctgataactc gatttgtccg aatcaaacct gtgacttggg
     1741 aaactggcat atctatgaga tttgaagtct atggctgcaa gataacagat tatccttgct
     1801 ctggaatgtt gggtatggtg tccggactta tttccgactc ccagatcaca gcatccaacc
     1861 aaggggacag gaactggatg cctgaaaata tccgcctggt gaccagccgc tcgggctggg
     1921 cactgccgcc cgccccgcac ccgtacgtga acgagtggct tcaggtggac ctggcggagg
     1981 agaagatcgt gcggggcgtc atcattcagg ggggcaaaca ccgggagaac aaggtgttca
     2041 tgaggaaatt caagatcggg tacagcaaca acggctcgga ctggaagatg gtcatggacg
     2101 acagcaagcg caaggccaag tcttttgaag gcaacaacaa ctatgacaca cctgagctac
     2161 ggacatttcc acccctttcc acacgattca tcaggatcta ccctgagaga gccactcacg
     2221 gcggactagg gctacggatg gagctgctgg gctgtgaggt ggaagcacct acagctggac
     2281 cgaccactcc caatgggaac ctggtggatg aatgtgatga cgaccaggcc aactgccaca
     2341 gcggaacagg tgatgacttc cagctcacag gtggtaccac tgtgctgacc acagaaaagc
     2401 caaccgtgat agacagcact atacaatcag agtttccaac atatggtttt aactgtgagt
     2461 ttggctgggg ttctcataag acgttctgtc actgggagca tgacagtcac gtgcagctca
     2521 gatggagtgt gttgaccagc aagacgggac cgattcagga tcacacagca ggagatggca
     2581 acttcatcta ctcccaagct gatgaaaacc agaaaggcaa agtggctcgc ctggtgagcc
     2641 ctgtggttta ttcccagaac tctgcccact gcatgacctt ctggtatcac atgtctggtt
     2701 cacacgtggg cacgctgagg gtcaaactgc gctaccagaa gccagaggaa tatgaccagt
     2761 tggtctggat ggccatcgga caccaagggg accactggaa agaggggcgt gtcctactgc
     2821 acaaatctct gaaactttac caggtgattt ttgagggtga aatcggaaaa ggcaaccttg
     2881 gcgggattgc agtggatgac attagtatca ataaccacat ccctcaagag gactgcacaa
     2941 aaccagcaga cctggataaa aagaacccgg aaagtaaaat cgacgaaaca gggagcaccc
     3001 caggatacca aggcacggga gacggtgatg agaacatctc caggaagccg ggcaacgtgt
     3061 tgaagaccct ggaccctatc ctcatcacca tcatcgccat gagtgccctg ggcgtcctcc
     3121 tgggcgccgt ctgcggggtc gtgctgtact gtgcctgctg gcacaacggg atgtcggaaa
     3181 gaaacttatc tgccctggag aactataact tcgaacttgt ggatggcgtg aagttgaaaa
     3241 aagacaaact gaatccacag agtacttact cggaggcatg aaggcagaca gaggtgacca
     3301 ggcaagcagg agagtggagc ggaggacaga gcttgagctg gggaccggct gatctttcac
     3361 tgttcgggct gggaagtgcg ttaatgatgc caagccaggt tttctcagga gcttcgatga
     3421 gttcggccga cagacacgaa cgacttagct gtgttaacaa tcggaatcct gtacagtcag
     3481 cttccttctg ttggtttctt ttgaataatc aaatgctggt gttgagacca agtatgattg
     3541 acttaataat tcatttggac tcccctttcc cttctctctc tccctcttct ggattctttt
     3601 cggaaactgc aaaatccaag atgctggcac caagtgtatt cagtggggcc cttttgacgg
     3661 acatgctacc tgcagcccag tgcccagaat atattcgagt aaccacattt cagtggactc
     3721 ctgaagctgg ccttgtgtat catcgcccgc gttgtgcata ggcaaagaag gagtaggatg
     3781 ttttcagtta aagtaccgta gcctcagtac cagtctagcg tgtcagctct gtttacgaag
     3841 caataccgtc agatttcctc gatgttttcc agtgttgtac tcaaccttgt gctgtgaact
     3901 ccatacagaa aactgtgcca tcaccaaaca ctgctggcaa ctgggtgtga tgccaacaac
     3961 cacaacgaag aatccttggc actggctggt ctacgtcctc tcaagtgcct ttttgtttgt
     4021 actggttctc attgtgttac attaacccgc cctgtttctc gctggtgaaa gccctcctct
     4081 tgaatcagac cctggtggcc cactgactaa gaagaaagta tattttagtg tgagatatca
     4141 gcctccgggt aggcaagggc tccgaagatt tggcaacgtg gcttaattgt tctgcttttt
     4201 ccgtagttca atttcatgtc tcttgaccct tttgtataaa gctgcaatat tctcttactg
     4261 ttctttcata tggaatgtat tttcaaatgt aaactctttc tctcctatct ctctgtcttt
     4321 ttcctctctt aggatttaag catttgccat tatccagaaa agaaacttgc agctttaacc
     4381 tgctggtaat ggcgaacaat tttactagac tttatgttgg aaaataaata aataagggaa
     4441 attcctaact ttgccctcca aagtctaact ttggtttcct tgttaactgg ttaaagtgac
     4501 agtatctttt ttcctaagcc atttgtctgt ctattccaat caaaatgatc ttcaatagaa
     4561 atgtttgcat ttaataaaaa tagtgataag ttgagagaag aaataatact aattggcttt
     4621 caagtgagac ccaaaggaat agagttctcc ccatatccaa aaacaggaga tttttacatc
     4681 caaatacaca aaaatgaccc gtgagagcct tcttgttttg gtattgagtc agataaggga
     4741 agtggaagaa agaacagtta atttaagaaa acgacaataa atcatggtgc ctggggatga
     4801 agtattttaa gatgacagag gggaagaaaa tgagtaaagt caaaacaaat gtttttaaaa
     4861 attcagtctg cagcaaccct gaaataacag agacttgaat gaatgcttct agaaacttcc
     4921 agtgcctcac aaacaaaaag cctgccttgg ggctgttaag acctaagcct ccaatggcac
     4981 agagaagtaa atatcttatc aggcagcatt gaattaactc aaagaagctt tggttgtttt
     5041 ccgtgtattt gtgccatgcg gcgttgtagg taagaacttc ctcccttccg gcactgctgt
     5101 aggtctcact cgaatatatt tgtgggagtc acattgcatc atggagggga aagtccattc
     5161 atcctggtct aattgaattg agaatgcctt ttgtttccag gaaagtattg atcactatga
     5221 aagaagaata gattcttatc cccagaggca tccattcagc cgttataatc gtaccaggat
     5281 gaaagcatta agacttgatt tacctttaag gcaacagact tacagttgtc ttcagccaag
     5341 gaaaaatgat actgcaactt taaatttgaa agtatcttgc actgataaat atatttaaaa
     5401 attatatgtt tataaagtta ttaatttgta aaggcagtgt tacaaaatgt tcagtttata
     5461 ttgttttaga ttgtttcgta attttaaaag gtgtaaaata acatattttt ttctttattg
     5521 agatctataa aactttctgt agtaaaatgt tttcatttta ctggtatatt attgcttcat
     5581 gttttgtacc atcataaaat tttgtgcaaa ttttttttac agaaattttt attttctatg
     5641 acaatatgac acttgtaaat tgttgattca aaatgaacag cgaagcctta actttaaatg
     5701 acatttgtat tctcagacac tgagttgcat aaaaaaccac acagaactga actgtaactt
     5761 aaattccaaa ctatgactac tacattccaa agaaacagtt gaattaaaca ttttcctaaa
     5821 ata
//
LOCUS       XM_032618602            5863 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X4, mRNA.
ACCESSION   XM_032618602
VERSION     XM_032618602.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5863
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5863
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 121 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746846"
     CDS             550..3321
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X3"
                     /protein_id="XP_032474493.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGT
                     TVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGP
                     IQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKL
                     RYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDI
                     SINNHIPQEDCTKPADLDKKNPESKIDETGSTPGYQGTGDGDENISRKPGNVLKTLDP
                     ILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKL
                     NPQSTYSEA"
     misc_feature    628..969
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(655..657,661..663,667..669,751..753,769..771,
                     880..882,952..954,958..960,964..969)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    988..1341
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(1012..1014,1018..1020,1024..1026,1105..1107,
                     1120..1122,1252..1254,1324..1326,1330..1332,1336..1341)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1378..1818
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1495..1497,1579..1581,1606..1608)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    1852..2295
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1981..1983,2056..2058,2077..2079)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2497..2976
                     /gene="NRP1"
                     /note="MAM domain, meprin/A5/mu; Region: MAM; pfam00629"
                     /db_xref="CDD:459878"
     misc_feature    3082..3318
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 agaaggggag gggaggagga ggtgggggaa gcaggggtgc agttggtgaa acaactccgt
       61 ctcccgctca tcttttcatt gcttgctcct ctccttcgcg cagacacctc ggacctcccc
      121 tgggcgccag ctcctcggct ccaacgcgtc cagaaacaag ccggattttt tttttttctt
      181 tctttctgga aattggcgtt ggtgtgcgtt tctctacgtc tctcctcctc ccaccaccac
      241 caccaccccc cccttttttt ttctgagaca tggcccgggc agtggctcct ggaagaggaa
      301 caagtgtggg aaaagagaga ggaaaccgga gctaaatgac aggatgcagg cgacttgaga
      361 cacaaaaaga ggagggtttc tctcggatca cggcattgcc tcgccgcttt cctttctcca
      421 agacggactg aggattttac agctctggga ggagtggaag cgctccggat tgttgagatc
      481 gccccggtgc tctgttttcc ctgcacgttc ggttctcccg cgtctgcccg ggaacccagc
      541 gaagggagga tggagagggg gctaccgctc ctgtgcgccg cgctcgccct ggtcctctcg
      601 gcggccggcg cttttcgcaa cgataaatgt ggagatacta taaaaatcga aagccccggg
      661 taccttacat ctcctggtta tcctcattct tatcacccaa gtgaaaaatg tgaatggctg
      721 attcaggctc ctgacccata tcagagaatt atgattaact tcaaccctca cttcgatttg
      781 gaagacagag actgcaagta tgactatgtg gaagtcatcg atggagagaa tgaaaatggg
      841 cgtttatggg gaaagttctg tggaaagatt gccccttctc ctgtcgtgtc ttcagggcca
      901 tttctcttta tcaagtttgt ctctgattat gagacacacg gggcaggatt ttccatacgt
      961 tatgaaattt tcaagagagg tcctgaatgt tcccagaact acacaacacc tagtggggtg
     1021 ataaaatccc caggattccc tgaaaaatat cccaacagcc tagaatgcac ctatattatc
     1081 tttgcaccaa agatgtcgga gattatcctg gaatttgaaa gctttgacct ggaggctgac
     1141 tcaaatcctc ctggggggat gttttgccgc tatgaccggc tagaaatctg ggatggattc
     1201 cctgatgttg gtccccacat tgggcgttac tgtgggcaga aaacaccagg tcgaatccac
     1261 tcctcatccg gcatcctgtc catggttttc tacacggaca gcgccatagc caaagaaggc
     1321 ttctcggcaa actacagtgt ctcacaaagc agtgtttcag aagacttcaa gtgtatggaa
     1381 gctctgggca tggaatccgg agagattcac tctgaccaga tcacagcttc ttcccagtac
     1441 agcaccaact ggtctgccga acgttcccgc ctccactatc ctgagaatgg gtggacccct
     1501 ggagaggatt cctacagaga gtggatccag gtagacctgg gccttctgcg ctttgtcact
     1561 gctgtcggga cacagggagc tatttcaaag gaaaccaaga agaaatacta tgtcaagaca
     1621 tacagaatag acattagctc caacggggaa gactggatca ccataaaaga aggaaataaa
     1681 cctgttatct ttcagggaaa caccaacccc acagatgttg tgattggagt tttccccaaa
     1741 cccctgataa ctcgatttgt ccgaatcaaa cctgtgactt gggaaactgg catatctatg
     1801 agatttgaag tctatggctg caagataaca gattatcctt gctctggaat gttgggtatg
     1861 gtgtccggac ttatttccga ctcccagatc acagcatcca accaagggga caggaactgg
     1921 atgcctgaaa atatccgcct ggtgaccagc cgctcgggct gggcactgcc gcccgccccg
     1981 cacccgtacg tgaacgagtg gcttcaggtg gacctggcgg aggagaagat cgtgcggggc
     2041 gtcatcattc aggggggcaa acaccgggag aacaaggtgt tcatgaggaa attcaagatc
     2101 gggtacagca acaacggctc ggactggaag atggtcatgg acgacagcaa gcgcaaggcc
     2161 aagtcttttg aaggcaacaa caactatgac acacctgagc tacggacatt tccacccctt
     2221 tccacacgat tcatcaggat ctaccctgag agagccactc acggcggact agggctacgg
     2281 atggagctgc tgggctgtga ggtggaagca cctacagctg gaccgaccac tcccaatggg
     2341 aacctggtgg atgaatgtga tgacgaccag gccaactgcc acagcggaac aggtgatgac
     2401 ttccagctca caggtggtac cactgtgctg accacagaaa agccaaccgt gatagacagc
     2461 actatacaat cagagtttcc aacatatggt tttaactgtg agtttggctg gggttctcat
     2521 aagacgttct gtcactggga gcatgacagt cacgtgcagc tcagatggag tgtgttgacc
     2581 agcaagacgg gaccgattca ggatcacaca ggagatggca acttcatcta ctcccaagct
     2641 gatgaaaacc agaaaggcaa agtggctcgc ctggtgagcc ctgtggttta ttcccagaac
     2701 tctgcccact gcatgacctt ctggtatcac atgtctggtt cacacgtggg cacgctgagg
     2761 gtcaaactgc gctaccagaa gccagaggaa tatgaccagt tggtctggat ggccatcgga
     2821 caccaagggg accactggaa agaggggcgt gtcctactgc acaaatctct gaaactttac
     2881 caggtgattt ttgagggtga aatcggaaaa ggcaaccttg gcgggattgc agtggatgac
     2941 attagtatca ataaccacat ccctcaagag gactgcacaa aaccagcaga cctggataaa
     3001 aagaacccgg aaagtaaaat cgacgaaaca gggagcaccc caggatacca aggcacggga
     3061 gacggtgatg agaacatctc caggaagccg ggcaacgtgt tgaagaccct ggaccctatc
     3121 ctcatcacca tcatcgccat gagtgccctg ggcgtcctcc tgggcgccgt ctgcggggtc
     3181 gtgctgtact gtgcctgctg gcacaacggg atgtcggaaa gaaacttatc tgccctggag
     3241 aactataact tcgaacttgt ggatggcgtg aagttgaaaa aagacaaact gaatccacag
     3301 agtacttact cggaggcatg aaggcagaca gaggtgacca ggcaagcagg agagtggagc
     3361 ggaggacaga gcttgagctg gggaccggct gatctttcac tgttcgggct gggaagtgcg
     3421 ttaatgatgc caagccaggt tttctcagga gcttcgatga gttcggccga cagacacgaa
     3481 cgacttagct gtgttaacaa tcggaatcct gtacagtcag cttccttctg ttggtttctt
     3541 ttgaataatc aaatgctggt gttgagacca agtatgattg acttaataat tcatttggac
     3601 tcccctttcc cttctctctc tccctcttct ggattctttt cggaaactgc aaaatccaag
     3661 atgctggcac caagtgtatt cagtggggcc cttttgacgg acatgctacc tgcagcccag
     3721 tgcccagaat atattcgagt aaccacattt cagtggactc ctgaagctgg ccttgtgtat
     3781 catcgcccgc gttgtgcata ggcaaagaag gagtaggatg ttttcagtta aagtaccgta
     3841 gcctcagtac cagtctagcg tgtcagctct gtttacgaag caataccgtc agatttcctc
     3901 gatgttttcc agtgttgtac tcaaccttgt gctgtgaact ccatacagaa aactgtgcca
     3961 tcaccaaaca ctgctggcaa ctgggtgtga tgccaacaac cacaacgaag aatccttggc
     4021 actggctggt ctacgtcctc tcaagtgcct ttttgtttgt actggttctc attgtgttac
     4081 attaacccgc cctgtttctc gctggtgaaa gccctcctct tgaatcagac cctggtggcc
     4141 cactgactaa gaagaaagta tattttagtg tgagatatca gcctccgggt aggcaagggc
     4201 tccgaagatt tggcaacgtg gcttaattgt tctgcttttt ccgtagttca atttcatgtc
     4261 tcttgaccct tttgtataaa gctgcaatat tctcttactg ttctttcata tggaatgtat
     4321 tttcaaatgt aaactctttc tctcctatct ctctgtcttt ttcctctctt aggatttaag
     4381 catttgccat tatccagaaa agaaacttgc agctttaacc tgctggtaat ggcgaacaat
     4441 tttactagac tttatgttgg aaaataaata aataagggaa attcctaact ttgccctcca
     4501 aagtctaact ttggtttcct tgttaactgg ttaaagtgac agtatctttt ttcctaagcc
     4561 atttgtctgt ctattccaat caaaatgatc ttcaatagaa atgtttgcat ttaataaaaa
     4621 tagtgataag ttgagagaag aaataatact aattggcttt caagtgagac ccaaaggaat
     4681 agagttctcc ccatatccaa aaacaggaga tttttacatc caaatacaca aaaatgaccc
     4741 gtgagagcct tcttgttttg gtattgagtc agataaggga agtggaagaa agaacagtta
     4801 atttaagaaa acgacaataa atcatggtgc ctggggatga agtattttaa gatgacagag
     4861 gggaagaaaa tgagtaaagt caaaacaaat gtttttaaaa attcagtctg cagcaaccct
     4921 gaaataacag agacttgaat gaatgcttct agaaacttcc agtgcctcac aaacaaaaag
     4981 cctgccttgg ggctgttaag acctaagcct ccaatggcac agagaagtaa atatcttatc
     5041 aggcagcatt gaattaactc aaagaagctt tggttgtttt ccgtgtattt gtgccatgcg
     5101 gcgttgtagg taagaacttc ctcccttccg gcactgctgt aggtctcact cgaatatatt
     5161 tgtgggagtc acattgcatc atggagggga aagtccattc atcctggtct aattgaattg
     5221 agaatgcctt ttgtttccag gaaagtattg atcactatga aagaagaata gattcttatc
     5281 cccagaggca tccattcagc cgttataatc gtaccaggat gaaagcatta agacttgatt
     5341 tacctttaag gcaacagact tacagttgtc ttcagccaag gaaaaatgat actgcaactt
     5401 taaatttgaa agtatcttgc actgataaat atatttaaaa attatatgtt tataaagtta
     5461 ttaatttgta aaggcagtgt tacaaaatgt tcagtttata ttgttttaga ttgtttcgta
     5521 attttaaaag gtgtaaaata acatattttt ttctttattg agatctataa aactttctgt
     5581 agtaaaatgt tttcatttta ctggtatatt attgcttcat gttttgtacc atcataaaat
     5641 tttgtgcaaa ttttttttac agaaattttt attttctatg acaatatgac acttgtaaat
     5701 tgttgattca aaatgaacag cgaagcctta actttaaatg acatttgtat tctcagacac
     5761 tgagttgcat aaaaaaccac acagaactga actgtaactt aaattccaaa ctatgactac
     5821 tacattccaa agaaacagtt gaattaaaca ttttcctaaa ata
//
LOCUS       XM_032618611            6046 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X5, mRNA.
ACCESSION   XM_032618611
VERSION     XM_032618611.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6046
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6046
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 121 long SRA reads, 18
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746846"
     CDS             733..3504
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X3"
                     /protein_id="XP_032474502.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGT
                     TVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGP
                     IQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKL
                     RYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDI
                     SINNHIPQEDCTKPADLDKKNPESKIDETGSTPGYQGTGDGDENISRKPGNVLKTLDP
                     ILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKL
                     NPQSTYSEA"
     misc_feature    811..1152
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(838..840,844..846,850..852,934..936,952..954,
                     1063..1065,1135..1137,1141..1143,1147..1152)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1171..1524
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(1195..1197,1201..1203,1207..1209,1288..1290,
                     1303..1305,1435..1437,1507..1509,1513..1515,1519..1524)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1561..2001
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1678..1680,1762..1764,1789..1791)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2035..2478
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(2164..2166,2239..2241,2260..2262)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2680..3159
                     /gene="NRP1"
                     /note="MAM domain, meprin/A5/mu; Region: MAM; pfam00629"
                     /db_xref="CDD:459878"
     misc_feature    3265..3501
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 gagtcaggat gctgggcggg gtcgggcgac gactgccccc tagctggaag gcacaccagc
       61 ttccaccctc cacggtcccc tctgacccag aggagaggac accagatctt gggtaacaat
      121 ggagcccgcg gcgcgcggcg ggcacccgag catgccaggc gcccagcagc gcgccccttt
      181 accgggcagg gaggccgggt ggggccgcag cacagcctcg cccgcgccaa tctactgact
      241 cggctctacg tggcagcgac actgccgacc ctcgcctggc tccgggacac ctcggacctc
      301 ccctgggcgc cagctcctcg gctccaacgc gtccagaaac aagccggatt tttttttttt
      361 ctttctttct ggaaattggc gttggtgtgc gtttctctac gtctctcctc ctcccaccac
      421 caccaccacc cccccctttt tttttctgag acatggcccg ggcagtggct cctggaagag
      481 gaacaagtgt gggaaaagag agaggaaacc ggagctaaat gacaggatgc aggcgacttg
      541 agacacaaaa agaggagggt ttctctcgga tcacggcatt gcctcgccgc tttcctttct
      601 ccaagacgga ctgaggattt tacagctctg ggaggagtgg aagcgctccg gattgttgag
      661 atcgccccgg tgctctgttt tccctgcacg ttcggttctc ccgcgtctgc ccgggaaccc
      721 agcgaaggga ggatggagag ggggctaccg ctcctgtgcg ccgcgctcgc cctggtcctc
      781 tcggcggccg gcgcttttcg caacgataaa tgtggagata ctataaaaat cgaaagcccc
      841 gggtacctta catctcctgg ttatcctcat tcttatcacc caagtgaaaa atgtgaatgg
      901 ctgattcagg ctcctgaccc atatcagaga attatgatta acttcaaccc tcacttcgat
      961 ttggaagaca gagactgcaa gtatgactat gtggaagtca tcgatggaga gaatgaaaat
     1021 gggcgtttat ggggaaagtt ctgtggaaag attgcccctt ctcctgtcgt gtcttcaggg
     1081 ccatttctct ttatcaagtt tgtctctgat tatgagacac acggggcagg attttccata
     1141 cgttatgaaa ttttcaagag aggtcctgaa tgttcccaga actacacaac acctagtggg
     1201 gtgataaaat ccccaggatt ccctgaaaaa tatcccaaca gcctagaatg cacctatatt
     1261 atctttgcac caaagatgtc ggagattatc ctggaatttg aaagctttga cctggaggct
     1321 gactcaaatc ctcctggggg gatgttttgc cgctatgacc ggctagaaat ctgggatgga
     1381 ttccctgatg ttggtcccca cattgggcgt tactgtgggc agaaaacacc aggtcgaatc
     1441 cactcctcat ccggcatcct gtccatggtt ttctacacgg acagcgccat agccaaagaa
     1501 ggcttctcgg caaactacag tgtctcacaa agcagtgttt cagaagactt caagtgtatg
     1561 gaagctctgg gcatggaatc cggagagatt cactctgacc agatcacagc ttcttcccag
     1621 tacagcacca actggtctgc cgaacgttcc cgcctccact atcctgagaa tgggtggacc
     1681 cctggagagg attcctacag agagtggatc caggtagacc tgggccttct gcgctttgtc
     1741 actgctgtcg ggacacaggg agctatttca aaggaaacca agaagaaata ctatgtcaag
     1801 acatacagaa tagacattag ctccaacggg gaagactgga tcaccataaa agaaggaaat
     1861 aaacctgtta tctttcaggg aaacaccaac cccacagatg ttgtgattgg agttttcccc
     1921 aaacccctga taactcgatt tgtccgaatc aaacctgtga cttgggaaac tggcatatct
     1981 atgagatttg aagtctatgg ctgcaagata acagattatc cttgctctgg aatgttgggt
     2041 atggtgtccg gacttatttc cgactcccag atcacagcat ccaaccaagg ggacaggaac
     2101 tggatgcctg aaaatatccg cctggtgacc agccgctcgg gctgggcact gccgcccgcc
     2161 ccgcacccgt acgtgaacga gtggcttcag gtggacctgg cggaggagaa gatcgtgcgg
     2221 ggcgtcatca ttcagggggg caaacaccgg gagaacaagg tgttcatgag gaaattcaag
     2281 atcgggtaca gcaacaacgg ctcggactgg aagatggtca tggacgacag caagcgcaag
     2341 gccaagtctt ttgaaggcaa caacaactat gacacacctg agctacggac atttccaccc
     2401 ctttccacac gattcatcag gatctaccct gagagagcca ctcacggcgg actagggcta
     2461 cggatggagc tgctgggctg tgaggtggaa gcacctacag ctggaccgac cactcccaat
     2521 gggaacctgg tggatgaatg tgatgacgac caggccaact gccacagcgg aacaggtgat
     2581 gacttccagc tcacaggtgg taccactgtg ctgaccacag aaaagccaac cgtgatagac
     2641 agcactatac aatcagagtt tccaacatat ggttttaact gtgagtttgg ctggggttct
     2701 cataagacgt tctgtcactg ggagcatgac agtcacgtgc agctcagatg gagtgtgttg
     2761 accagcaaga cgggaccgat tcaggatcac acaggagatg gcaacttcat ctactcccaa
     2821 gctgatgaaa accagaaagg caaagtggct cgcctggtga gccctgtggt ttattcccag
     2881 aactctgccc actgcatgac cttctggtat cacatgtctg gttcacacgt gggcacgctg
     2941 agggtcaaac tgcgctacca gaagccagag gaatatgacc agttggtctg gatggccatc
     3001 ggacaccaag gggaccactg gaaagagggg cgtgtcctac tgcacaaatc tctgaaactt
     3061 taccaggtga tttttgaggg tgaaatcgga aaaggcaacc ttggcgggat tgcagtggat
     3121 gacattagta tcaataacca catccctcaa gaggactgca caaaaccagc agacctggat
     3181 aaaaagaacc cggaaagtaa aatcgacgaa acagggagca ccccaggata ccaaggcacg
     3241 ggagacggtg atgagaacat ctccaggaag ccgggcaacg tgttgaagac cctggaccct
     3301 atcctcatca ccatcatcgc catgagtgcc ctgggcgtcc tcctgggcgc cgtctgcggg
     3361 gtcgtgctgt actgtgcctg ctggcacaac gggatgtcgg aaagaaactt atctgccctg
     3421 gagaactata acttcgaact tgtggatggc gtgaagttga aaaaagacaa actgaatcca
     3481 cagagtactt actcggaggc atgaaggcag acagaggtga ccaggcaagc aggagagtgg
     3541 agcggaggac agagcttgag ctggggaccg gctgatcttt cactgttcgg gctgggaagt
     3601 gcgttaatga tgccaagcca ggttttctca ggagcttcga tgagttcggc cgacagacac
     3661 gaacgactta gctgtgttaa caatcggaat cctgtacagt cagcttcctt ctgttggttt
     3721 cttttgaata atcaaatgct ggtgttgaga ccaagtatga ttgacttaat aattcatttg
     3781 gactcccctt tcccttctct ctctccctct tctggattct tttcggaaac tgcaaaatcc
     3841 aagatgctgg caccaagtgt attcagtggg gcccttttga cggacatgct acctgcagcc
     3901 cagtgcccag aatatattcg agtaaccaca tttcagtgga ctcctgaagc tggccttgtg
     3961 tatcatcgcc cgcgttgtgc ataggcaaag aaggagtagg atgttttcag ttaaagtacc
     4021 gtagcctcag taccagtcta gcgtgtcagc tctgtttacg aagcaatacc gtcagatttc
     4081 ctcgatgttt tccagtgttg tactcaacct tgtgctgtga actccataca gaaaactgtg
     4141 ccatcaccaa acactgctgg caactgggtg tgatgccaac aaccacaacg aagaatcctt
     4201 ggcactggct ggtctacgtc ctctcaagtg cctttttgtt tgtactggtt ctcattgtgt
     4261 tacattaacc cgccctgttt ctcgctggtg aaagccctcc tcttgaatca gaccctggtg
     4321 gcccactgac taagaagaaa gtatatttta gtgtgagata tcagcctccg ggtaggcaag
     4381 ggctccgaag atttggcaac gtggcttaat tgttctgctt tttccgtagt tcaatttcat
     4441 gtctcttgac ccttttgtat aaagctgcaa tattctctta ctgttctttc atatggaatg
     4501 tattttcaaa tgtaaactct ttctctccta tctctctgtc tttttcctct cttaggattt
     4561 aagcatttgc cattatccag aaaagaaact tgcagcttta acctgctggt aatggcgaac
     4621 aattttacta gactttatgt tggaaaataa ataaataagg gaaattccta actttgccct
     4681 ccaaagtcta actttggttt ccttgttaac tggttaaagt gacagtatct tttttcctaa
     4741 gccatttgtc tgtctattcc aatcaaaatg atcttcaata gaaatgtttg catttaataa
     4801 aaatagtgat aagttgagag aagaaataat actaattggc tttcaagtga gacccaaagg
     4861 aatagagttc tccccatatc caaaaacagg agatttttac atccaaatac acaaaaatga
     4921 cccgtgagag ccttcttgtt ttggtattga gtcagataag ggaagtggaa gaaagaacag
     4981 ttaatttaag aaaacgacaa taaatcatgg tgcctgggga tgaagtattt taagatgaca
     5041 gaggggaaga aaatgagtaa agtcaaaaca aatgttttta aaaattcagt ctgcagcaac
     5101 cctgaaataa cagagacttg aatgaatgct tctagaaact tccagtgcct cacaaacaaa
     5161 aagcctgcct tggggctgtt aagacctaag cctccaatgg cacagagaag taaatatctt
     5221 atcaggcagc attgaattaa ctcaaagaag ctttggttgt tttccgtgta tttgtgccat
     5281 gcggcgttgt aggtaagaac ttcctccctt ccggcactgc tgtaggtctc actcgaatat
     5341 atttgtggga gtcacattgc atcatggagg ggaaagtcca ttcatcctgg tctaattgaa
     5401 ttgagaatgc cttttgtttc caggaaagta ttgatcacta tgaaagaaga atagattctt
     5461 atccccagag gcatccattc agccgttata atcgtaccag gatgaaagca ttaagacttg
     5521 atttaccttt aaggcaacag acttacagtt gtcttcagcc aaggaaaaat gatactgcaa
     5581 ctttaaattt gaaagtatct tgcactgata aatatattta aaaattatat gtttataaag
     5641 ttattaattt gtaaaggcag tgttacaaaa tgttcagttt atattgtttt agattgtttc
     5701 gtaattttaa aaggtgtaaa ataacatatt tttttcttta ttgagatcta taaaactttc
     5761 tgtagtaaaa tgttttcatt ttactggtat attattgctt catgttttgt accatcataa
     5821 aattttgtgc aaattttttt tacagaaatt tttattttct atgacaatat gacacttgta
     5881 aattgttgat tcaaaatgaa cagcgaagcc ttaactttaa atgacatttg tattctcaga
     5941 cactgagttg cataaaaaac cacacagaac tgaactgtaa cttaaattcc aaactatgac
     6001 tactacattc caaagaaaca gttgaattaa acattttcct aaaata
//
LOCUS       XM_032618618            5802 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X6, mRNA.
ACCESSION   XM_032618618
VERSION     XM_032618618.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5802
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5802
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 66 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746846"
     CDS             507..3260
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X4"
                     /protein_id="XP_032474509.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGGTTVLTTEK
                     PTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGPIQDHTAG
                     DGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPE
                     EYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHI
                     PQEDCTKPADLDKKNPESKIDETGSTPGYQGTGDGDENISRKPGNVLKTLDPILITII
                     AMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNPQSTY
                     SEA"
     misc_feature    585..926
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(612..614,618..620,624..626,708..710,726..728,
                     837..839,909..911,915..917,921..926)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    945..1298
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(969..971,975..977,981..983,1062..1064,1077..1079,
                     1209..1211,1281..1283,1287..1289,1293..1298)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1335..1775
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1452..1454,1536..1538,1563..1565)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    1809..2252
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1938..1940,2013..2015,2034..2036)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2418..2900
                     /gene="NRP1"
                     /note="Domain in meprin, A5, receptor protein tyrosine
                     phosphatase mu (and others); Region: MAM; smart00137"
                     /db_xref="CDD:214533"
     misc_feature    3021..3257
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 tggtgaaaca actccgtctc ccgctcatct tttcattgct tgctcctctc cttcgcgcag
       61 acacctcgga cctcccctgg gcgccagctc ctcggctcca acgcgtccag aaacaagccg
      121 gatttttttt ttttctttct ttctggaaat tggcgttggt gtgcgtttct ctacgtctct
      181 cctcctccca ccaccaccac cacccccccc tttttttttc tgagacatgg cccgggcagt
      241 ggctcctgga agaggaacaa gtgtgggaaa agagagagga aaccggagct aaatgacagg
      301 atgcaggcga cttgagacac aaaaagagga gggtttctct cggatcacgg cattgcctcg
      361 ccgctttcct ttctccaaga cggactgagg attttacagc tctgggagga gtggaagcgc
      421 tccggattgt tgagatcgcc ccggtgctct gttttccctg cacgttcggt tctcccgcgt
      481 ctgcccggga acccagcgaa gggaggatgg agagggggct accgctcctg tgcgccgcgc
      541 tcgccctggt cctctcggcg gccggcgctt ttcgcaacga taaatgtgga gatactataa
      601 aaatcgaaag ccccgggtac cttacatctc ctggttatcc tcattcttat cacccaagtg
      661 aaaaatgtga atggctgatt caggctcctg acccatatca gagaattatg attaacttca
      721 accctcactt cgatttggaa gacagagact gcaagtatga ctatgtggaa gtcatcgatg
      781 gagagaatga aaatgggcgt ttatggggaa agttctgtgg aaagattgcc ccttctcctg
      841 tcgtgtcttc agggccattt ctctttatca agtttgtctc tgattatgag acacacgggg
      901 caggattttc catacgttat gaaattttca agagaggtcc tgaatgttcc cagaactaca
      961 caacacctag tggggtgata aaatccccag gattccctga aaaatatccc aacagcctag
     1021 aatgcaccta tattatcttt gcaccaaaga tgtcggagat tatcctggaa tttgaaagct
     1081 ttgacctgga ggctgactca aatcctcctg gggggatgtt ttgccgctat gaccggctag
     1141 aaatctggga tggattccct gatgttggtc cccacattgg gcgttactgt gggcagaaaa
     1201 caccaggtcg aatccactcc tcatccggca tcctgtccat ggttttctac acggacagcg
     1261 ccatagccaa agaaggcttc tcggcaaact acagtgtctc acaaagcagt gtttcagaag
     1321 acttcaagtg tatggaagct ctgggcatgg aatccggaga gattcactct gaccagatca
     1381 cagcttcttc ccagtacagc accaactggt ctgccgaacg ttcccgcctc cactatcctg
     1441 agaatgggtg gacccctgga gaggattcct acagagagtg gatccaggta gacctgggcc
     1501 ttctgcgctt tgtcactgct gtcgggacac agggagctat ttcaaaggaa accaagaaga
     1561 aatactatgt caagacatac agaatagaca ttagctccaa cggggaagac tggatcacca
     1621 taaaagaagg aaataaacct gttatctttc agggaaacac caaccccaca gatgttgtga
     1681 ttggagtttt ccccaaaccc ctgataactc gatttgtccg aatcaaacct gtgacttggg
     1741 aaactggcat atctatgaga tttgaagtct atggctgcaa gataacagat tatccttgct
     1801 ctggaatgtt gggtatggtg tccggactta tttccgactc ccagatcaca gcatccaacc
     1861 aaggggacag gaactggatg cctgaaaata tccgcctggt gaccagccgc tcgggctggg
     1921 cactgccgcc cgccccgcac ccgtacgtga acgagtggct tcaggtggac ctggcggagg
     1981 agaagatcgt gcggggcgtc atcattcagg ggggcaaaca ccgggagaac aaggtgttca
     2041 tgaggaaatt caagatcggg tacagcaaca acggctcgga ctggaagatg gtcatggacg
     2101 acagcaagcg caaggccaag tcttttgaag gcaacaacaa ctatgacaca cctgagctac
     2161 ggacatttcc acccctttcc acacgattca tcaggatcta ccctgagaga gccactcacg
     2221 gcggactagg gctacggatg gagctgctgg gctgtgaggt ggaagcacct acagctggac
     2281 cgaccactcc caatgggaac ctggtggatg aatgtgatga cgaccaggcc aactgccaca
     2341 gcggaacagg tggtaccact gtgctgacca cagaaaagcc aaccgtgata gacagcacta
     2401 tacaatcaga gtttccaaca tatggtttta actgtgagtt tggctggggt tctcataaga
     2461 cgttctgtca ctgggagcat gacagtcacg tgcagctcag atggagtgtg ttgaccagca
     2521 agacgggacc gattcaggat cacacagcag gagatggcaa cttcatctac tcccaagctg
     2581 atgaaaacca gaaaggcaaa gtggctcgcc tggtgagccc tgtggtttat tcccagaact
     2641 ctgcccactg catgaccttc tggtatcaca tgtctggttc acacgtgggc acgctgaggg
     2701 tcaaactgcg ctaccagaag ccagaggaat atgaccagtt ggtctggatg gccatcggac
     2761 accaagggga ccactggaaa gaggggcgtg tcctactgca caaatctctg aaactttacc
     2821 aggtgatttt tgagggtgaa atcggaaaag gcaaccttgg cgggattgca gtggatgaca
     2881 ttagtatcaa taaccacatc cctcaagagg actgcacaaa accagcagac ctggataaaa
     2941 agaacccgga aagtaaaatc gacgaaacag ggagcacccc aggataccaa ggcacgggag
     3001 acggtgatga gaacatctcc aggaagccgg gcaacgtgtt gaagaccctg gaccctatcc
     3061 tcatcaccat catcgccatg agtgccctgg gcgtcctcct gggcgccgtc tgcggggtcg
     3121 tgctgtactg tgcctgctgg cacaacggga tgtcggaaag aaacttatct gccctggaga
     3181 actataactt cgaacttgtg gatggcgtga agttgaaaaa agacaaactg aatccacaga
     3241 gtacttactc ggaggcatga aggcagacag aggtgaccag gcaagcagga gagtggagcg
     3301 gaggacagag cttgagctgg ggaccggctg atctttcact gttcgggctg ggaagtgcgt
     3361 taatgatgcc aagccaggtt ttctcaggag cttcgatgag ttcggccgac agacacgaac
     3421 gacttagctg tgttaacaat cggaatcctg tacagtcagc ttccttctgt tggtttcttt
     3481 tgaataatca aatgctggtg ttgagaccaa gtatgattga cttaataatt catttggact
     3541 cccctttccc ttctctctct ccctcttctg gattcttttc ggaaactgca aaatccaaga
     3601 tgctggcacc aagtgtattc agtggggccc ttttgacgga catgctacct gcagcccagt
     3661 gcccagaata tattcgagta accacatttc agtggactcc tgaagctggc cttgtgtatc
     3721 atcgcccgcg ttgtgcatag gcaaagaagg agtaggatgt tttcagttaa agtaccgtag
     3781 cctcagtacc agtctagcgt gtcagctctg tttacgaagc aataccgtca gatttcctcg
     3841 atgttttcca gtgttgtact caaccttgtg ctgtgaactc catacagaaa actgtgccat
     3901 caccaaacac tgctggcaac tgggtgtgat gccaacaacc acaacgaaga atccttggca
     3961 ctggctggtc tacgtcctct caagtgcctt tttgtttgta ctggttctca ttgtgttaca
     4021 ttaacccgcc ctgtttctcg ctggtgaaag ccctcctctt gaatcagacc ctggtggccc
     4081 actgactaag aagaaagtat attttagtgt gagatatcag cctccgggta ggcaagggct
     4141 ccgaagattt ggcaacgtgg cttaattgtt ctgctttttc cgtagttcaa tttcatgtct
     4201 cttgaccctt ttgtataaag ctgcaatatt ctcttactgt tctttcatat ggaatgtatt
     4261 ttcaaatgta aactctttct ctcctatctc tctgtctttt tcctctctta ggatttaagc
     4321 atttgccatt atccagaaaa gaaacttgca gctttaacct gctggtaatg gcgaacaatt
     4381 ttactagact ttatgttgga aaataaataa ataagggaaa ttcctaactt tgccctccaa
     4441 agtctaactt tggtttcctt gttaactggt taaagtgaca gtatcttttt tcctaagcca
     4501 tttgtctgtc tattccaatc aaaatgatct tcaatagaaa tgtttgcatt taataaaaat
     4561 agtgataagt tgagagaaga aataatacta attggctttc aagtgagacc caaaggaata
     4621 gagttctccc catatccaaa aacaggagat ttttacatcc aaatacacaa aaatgacccg
     4681 tgagagcctt cttgttttgg tattgagtca gataagggaa gtggaagaaa gaacagttaa
     4741 tttaagaaaa cgacaataaa tcatggtgcc tggggatgaa gtattttaag atgacagagg
     4801 ggaagaaaat gagtaaagtc aaaacaaatg tttttaaaaa ttcagtctgc agcaaccctg
     4861 aaataacaga gacttgaatg aatgcttcta gaaacttcca gtgcctcaca aacaaaaagc
     4921 ctgccttggg gctgttaaga cctaagcctc caatggcaca gagaagtaaa tatcttatca
     4981 ggcagcattg aattaactca aagaagcttt ggttgttttc cgtgtatttg tgccatgcgg
     5041 cgttgtaggt aagaacttcc tcccttccgg cactgctgta ggtctcactc gaatatattt
     5101 gtgggagtca cattgcatca tggaggggaa agtccattca tcctggtcta attgaattga
     5161 gaatgccttt tgtttccagg aaagtattga tcactatgaa agaagaatag attcttatcc
     5221 ccagaggcat ccattcagcc gttataatcg taccaggatg aaagcattaa gacttgattt
     5281 acctttaagg caacagactt acagttgtct tcagccaagg aaaaatgata ctgcaacttt
     5341 aaatttgaaa gtatcttgca ctgataaata tatttaaaaa ttatatgttt ataaagttat
     5401 taatttgtaa aggcagtgtt acaaaatgtt cagtttatat tgttttagat tgtttcgtaa
     5461 ttttaaaagg tgtaaaataa catatttttt tctttattga gatctataaa actttctgta
     5521 gtaaaatgtt ttcattttac tggtatatta ttgcttcatg ttttgtacca tcataaaatt
     5581 ttgtgcaaat tttttttaca gaaattttta ttttctatga caatatgaca cttgtaaatt
     5641 gttgattcaa aatgaacagc gaagccttaa ctttaaatga catttgtatt ctcagacact
     5701 gagttgcata aaaaaccaca cagaactgaa ctgtaactta aattccaaac tatgactact
     5761 acattccaaa gaaacagttg aattaaacat tttcctaaaa ta
//
LOCUS       XM_032618626            5827 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X7, mRNA.
ACCESSION   XM_032618626
VERSION     XM_032618626.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5827
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5827
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 90 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746846"
     CDS             535..3285
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X5"
                     /protein_id="XP_032474517.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGGTTVLTTEK
                     PTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGPIQDHTGD
                     GNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEE
                     YDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHIP
                     QEDCTKPADLDKKNPESKIDETGSTPGYQGTGDGDENISRKPGNVLKTLDPILITIIA
                     MSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNPQSTYS
                     EA"
     misc_feature    613..954
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(640..642,646..648,652..654,736..738,754..756,
                     865..867,937..939,943..945,949..954)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    973..1326
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(997..999,1003..1005,1009..1011,1090..1092,
                     1105..1107,1237..1239,1309..1311,1315..1317,1321..1326)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1363..1803
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1480..1482,1564..1566,1591..1593)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    1837..2280
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1966..1968,2041..2043,2062..2064)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2461..2940
                     /gene="NRP1"
                     /note="MAM domain, meprin/A5/mu; Region: MAM; pfam00629"
                     /db_xref="CDD:459878"
     misc_feature    3046..3282
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 gaggaggtgg gggaagcagg ggtgcagttg gtgaaacaac tccgtctccc gctcatcttt
       61 tcattgcttg ctcctctcct tcgcgcagac acctcggacc tcccctgggc gccagctcct
      121 cggctccaac gcgtccagaa acaagccgga tttttttttt ttctttcttt ctggaaattg
      181 gcgttggtgt gcgtttctct acgtctctcc tcctcccacc accaccacca cccccccctt
      241 tttttttctg agacatggcc cgggcagtgg ctcctggaag aggaacaagt gtgggaaaag
      301 agagaggaaa ccggagctaa atgacaggat gcaggcgact tgagacacaa aaagaggagg
      361 gtttctctcg gatcacggca ttgcctcgcc gctttccttt ctccaagacg gactgaggat
      421 tttacagctc tgggaggagt ggaagcgctc cggattgttg agatcgcccc ggtgctctgt
      481 tttccctgca cgttcggttc tcccgcgtct gcccgggaac ccagcgaagg gaggatggag
      541 agggggctac cgctcctgtg cgccgcgctc gccctggtcc tctcggcggc cggcgctttt
      601 cgcaacgata aatgtggaga tactataaaa atcgaaagcc ccgggtacct tacatctcct
      661 ggttatcctc attcttatca cccaagtgaa aaatgtgaat ggctgattca ggctcctgac
      721 ccatatcaga gaattatgat taacttcaac cctcacttcg atttggaaga cagagactgc
      781 aagtatgact atgtggaagt catcgatgga gagaatgaaa atgggcgttt atggggaaag
      841 ttctgtggaa agattgcccc ttctcctgtc gtgtcttcag ggccatttct ctttatcaag
      901 tttgtctctg attatgagac acacggggca ggattttcca tacgttatga aattttcaag
      961 agaggtcctg aatgttccca gaactacaca acacctagtg gggtgataaa atccccagga
     1021 ttccctgaaa aatatcccaa cagcctagaa tgcacctata ttatctttgc accaaagatg
     1081 tcggagatta tcctggaatt tgaaagcttt gacctggagg ctgactcaaa tcctcctggg
     1141 gggatgtttt gccgctatga ccggctagaa atctgggatg gattccctga tgttggtccc
     1201 cacattgggc gttactgtgg gcagaaaaca ccaggtcgaa tccactcctc atccggcatc
     1261 ctgtccatgg ttttctacac ggacagcgcc atagccaaag aaggcttctc ggcaaactac
     1321 agtgtctcac aaagcagtgt ttcagaagac ttcaagtgta tggaagctct gggcatggaa
     1381 tccggagaga ttcactctga ccagatcaca gcttcttccc agtacagcac caactggtct
     1441 gccgaacgtt cccgcctcca ctatcctgag aatgggtgga cccctggaga ggattcctac
     1501 agagagtgga tccaggtaga cctgggcctt ctgcgctttg tcactgctgt cgggacacag
     1561 ggagctattt caaaggaaac caagaagaaa tactatgtca agacatacag aatagacatt
     1621 agctccaacg gggaagactg gatcaccata aaagaaggaa ataaacctgt tatctttcag
     1681 ggaaacacca accccacaga tgttgtgatt ggagttttcc ccaaacccct gataactcga
     1741 tttgtccgaa tcaaacctgt gacttgggaa actggcatat ctatgagatt tgaagtctat
     1801 ggctgcaaga taacagatta tccttgctct ggaatgttgg gtatggtgtc cggacttatt
     1861 tccgactccc agatcacagc atccaaccaa ggggacagga actggatgcc tgaaaatatc
     1921 cgcctggtga ccagccgctc gggctgggca ctgccgcccg ccccgcaccc gtacgtgaac
     1981 gagtggcttc aggtggacct ggcggaggag aagatcgtgc ggggcgtcat cattcagggg
     2041 ggcaaacacc gggagaacaa ggtgttcatg aggaaattca agatcgggta cagcaacaac
     2101 ggctcggact ggaagatggt catggacgac agcaagcgca aggccaagtc ttttgaaggc
     2161 aacaacaact atgacacacc tgagctacgg acatttccac ccctttccac acgattcatc
     2221 aggatctacc ctgagagagc cactcacggc ggactagggc tacggatgga gctgctgggc
     2281 tgtgaggtgg aagcacctac agctggaccg accactccca atgggaacct ggtggatgaa
     2341 tgtgatgacg accaggccaa ctgccacagc ggaacaggtg gtaccactgt gctgaccaca
     2401 gaaaagccaa ccgtgataga cagcactata caatcagagt ttccaacata tggttttaac
     2461 tgtgagtttg gctggggttc tcataagacg ttctgtcact gggagcatga cagtcacgtg
     2521 cagctcagat ggagtgtgtt gaccagcaag acgggaccga ttcaggatca cacaggagat
     2581 ggcaacttca tctactccca agctgatgaa aaccagaaag gcaaagtggc tcgcctggtg
     2641 agccctgtgg tttattccca gaactctgcc cactgcatga ccttctggta tcacatgtct
     2701 ggttcacacg tgggcacgct gagggtcaaa ctgcgctacc agaagccaga ggaatatgac
     2761 cagttggtct ggatggccat cggacaccaa ggggaccact ggaaagaggg gcgtgtccta
     2821 ctgcacaaat ctctgaaact ttaccaggtg atttttgagg gtgaaatcgg aaaaggcaac
     2881 cttggcggga ttgcagtgga tgacattagt atcaataacc acatccctca agaggactgc
     2941 acaaaaccag cagacctgga taaaaagaac ccggaaagta aaatcgacga aacagggagc
     3001 accccaggat accaaggcac gggagacggt gatgagaaca tctccaggaa gccgggcaac
     3061 gtgttgaaga ccctggaccc tatcctcatc accatcatcg ccatgagtgc cctgggcgtc
     3121 ctcctgggcg ccgtctgcgg ggtcgtgctg tactgtgcct gctggcacaa cgggatgtcg
     3181 gaaagaaact tatctgccct ggagaactat aacttcgaac ttgtggatgg cgtgaagttg
     3241 aaaaaagaca aactgaatcc acagagtact tactcggagg catgaaggca gacagaggtg
     3301 accaggcaag caggagagtg gagcggagga cagagcttga gctggggacc ggctgatctt
     3361 tcactgttcg ggctgggaag tgcgttaatg atgccaagcc aggttttctc aggagcttcg
     3421 atgagttcgg ccgacagaca cgaacgactt agctgtgtta acaatcggaa tcctgtacag
     3481 tcagcttcct tctgttggtt tcttttgaat aatcaaatgc tggtgttgag accaagtatg
     3541 attgacttaa taattcattt ggactcccct ttcccttctc tctctccctc ttctggattc
     3601 ttttcggaaa ctgcaaaatc caagatgctg gcaccaagtg tattcagtgg ggcccttttg
     3661 acggacatgc tacctgcagc ccagtgccca gaatatattc gagtaaccac atttcagtgg
     3721 actcctgaag ctggccttgt gtatcatcgc ccgcgttgtg cataggcaaa gaaggagtag
     3781 gatgttttca gttaaagtac cgtagcctca gtaccagtct agcgtgtcag ctctgtttac
     3841 gaagcaatac cgtcagattt cctcgatgtt ttccagtgtt gtactcaacc ttgtgctgtg
     3901 aactccatac agaaaactgt gccatcacca aacactgctg gcaactgggt gtgatgccaa
     3961 caaccacaac gaagaatcct tggcactggc tggtctacgt cctctcaagt gcctttttgt
     4021 ttgtactggt tctcattgtg ttacattaac ccgccctgtt tctcgctggt gaaagccctc
     4081 ctcttgaatc agaccctggt ggcccactga ctaagaagaa agtatatttt agtgtgagat
     4141 atcagcctcc gggtaggcaa gggctccgaa gatttggcaa cgtggcttaa ttgttctgct
     4201 ttttccgtag ttcaatttca tgtctcttga cccttttgta taaagctgca atattctctt
     4261 actgttcttt catatggaat gtattttcaa atgtaaactc tttctctcct atctctctgt
     4321 ctttttcctc tcttaggatt taagcatttg ccattatcca gaaaagaaac ttgcagcttt
     4381 aacctgctgg taatggcgaa caattttact agactttatg ttggaaaata aataaataag
     4441 ggaaattcct aactttgccc tccaaagtct aactttggtt tccttgttaa ctggttaaag
     4501 tgacagtatc ttttttccta agccatttgt ctgtctattc caatcaaaat gatcttcaat
     4561 agaaatgttt gcatttaata aaaatagtga taagttgaga gaagaaataa tactaattgg
     4621 ctttcaagtg agacccaaag gaatagagtt ctccccatat ccaaaaacag gagattttta
     4681 catccaaata cacaaaaatg acccgtgaga gccttcttgt tttggtattg agtcagataa
     4741 gggaagtgga agaaagaaca gttaatttaa gaaaacgaca ataaatcatg gtgcctgggg
     4801 atgaagtatt ttaagatgac agaggggaag aaaatgagta aagtcaaaac aaatgttttt
     4861 aaaaattcag tctgcagcaa ccctgaaata acagagactt gaatgaatgc ttctagaaac
     4921 ttccagtgcc tcacaaacaa aaagcctgcc ttggggctgt taagacctaa gcctccaatg
     4981 gcacagagaa gtaaatatct tatcaggcag cattgaatta actcaaagaa gctttggttg
     5041 ttttccgtgt atttgtgcca tgcggcgttg taggtaagaa cttcctccct tccggcactg
     5101 ctgtaggtct cactcgaata tatttgtggg agtcacattg catcatggag gggaaagtcc
     5161 attcatcctg gtctaattga attgagaatg ccttttgttt ccaggaaagt attgatcact
     5221 atgaaagaag aatagattct tatccccaga ggcatccatt cagccgttat aatcgtacca
     5281 ggatgaaagc attaagactt gatttacctt taaggcaaca gacttacagt tgtcttcagc
     5341 caaggaaaaa tgatactgca actttaaatt tgaaagtatc ttgcactgat aaatatattt
     5401 aaaaattata tgtttataaa gttattaatt tgtaaaggca gtgttacaaa atgttcagtt
     5461 tatattgttt tagattgttt cgtaatttta aaaggtgtaa aataacatat ttttttcttt
     5521 attgagatct ataaaacttt ctgtagtaaa atgttttcat tttactggta tattattgct
     5581 tcatgttttg taccatcata aaattttgtg caaatttttt ttacagaaat ttttattttc
     5641 tatgacaata tgacacttgt aaattgttga ttcaaaatga acagcgaagc cttaacttta
     5701 aatgacattt gtattctcag acactgagtt gcataaaaaa ccacacagaa ctgaactgta
     5761 acttaaattc caaactatga ctactacatt ccaaagaaac agttgaatta aacattttcc
     5821 taaaata
//
LOCUS       XM_032618635            5998 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X8, mRNA.
ACCESSION   XM_032618635
VERSION     XM_032618635.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5998
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5998
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 89 long SRA reads, 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746846"
     CDS             706..3456
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X5"
                     /protein_id="XP_032474526.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGGTTVLTTEK
                     PTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGPIQDHTGD
                     GNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEE
                     YDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHIP
                     QEDCTKPADLDKKNPESKIDETGSTPGYQGTGDGDENISRKPGNVLKTLDPILITIIA
                     MSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNPQSTYS
                     EA"
     misc_feature    784..1125
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(811..813,817..819,823..825,907..909,925..927,
                     1036..1038,1108..1110,1114..1116,1120..1125)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1144..1497
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(1168..1170,1174..1176,1180..1182,1261..1263,
                     1276..1278,1408..1410,1480..1482,1486..1488,1492..1497)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1534..1974
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1651..1653,1735..1737,1762..1764)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2008..2451
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(2137..2139,2212..2214,2233..2235)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2632..3111
                     /gene="NRP1"
                     /note="MAM domain, meprin/A5/mu; Region: MAM; pfam00629"
                     /db_xref="CDD:459878"
     misc_feature    3217..3453
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 gacgactgcc ccctagctgg aaggcacacc agcttccacc ctccacggtc ccctctgacc
       61 cagaggagag gacaccagat cttgggtaac aatggagccc gcggcgcgcg gcgggcaccc
      121 gagcatgcca ggcgcccagc agcgcgcccc tttaccgggc agggaggccg ggtggggccg
      181 cagcacagcc tcgcccgcgc caatctactg actcggctct acgtggcagc gacactgccg
      241 accctcgcct ggctccggga cacctcggac ctcccctggg cgccagctcc tcggctccaa
      301 cgcgtccaga aacaagccgg attttttttt tttctttctt tctggaaatt ggcgttggtg
      361 tgcgtttctc tacgtctctc ctcctcccac caccaccacc acccccccct ttttttttct
      421 gagacatggc ccgggcagtg gctcctggaa gaggaacaag tgtgggaaaa gagagaggaa
      481 accggagcta aatgacagga tgcaggcgac ttgagacaca aaaagaggag ggtttctctc
      541 ggatcacggc attgcctcgc cgctttcctt tctccaagac ggactgagga ttttacagct
      601 ctgggaggag tggaagcgct ccggattgtt gagatcgccc cggtgctctg ttttccctgc
      661 acgttcggtt ctcccgcgtc tgcccgggaa cccagcgaag ggaggatgga gagggggcta
      721 ccgctcctgt gcgccgcgct cgccctggtc ctctcggcgg ccggcgcttt tcgcaacgat
      781 aaatgtggag atactataaa aatcgaaagc cccgggtacc ttacatctcc tggttatcct
      841 cattcttatc acccaagtga aaaatgtgaa tggctgattc aggctcctga cccatatcag
      901 agaattatga ttaacttcaa ccctcacttc gatttggaag acagagactg caagtatgac
      961 tatgtggaag tcatcgatgg agagaatgaa aatgggcgtt tatggggaaa gttctgtgga
     1021 aagattgccc cttctcctgt cgtgtcttca gggccatttc tctttatcaa gtttgtctct
     1081 gattatgaga cacacggggc aggattttcc atacgttatg aaattttcaa gagaggtcct
     1141 gaatgttccc agaactacac aacacctagt ggggtgataa aatccccagg attccctgaa
     1201 aaatatccca acagcctaga atgcacctat attatctttg caccaaagat gtcggagatt
     1261 atcctggaat ttgaaagctt tgacctggag gctgactcaa atcctcctgg ggggatgttt
     1321 tgccgctatg accggctaga aatctgggat ggattccctg atgttggtcc ccacattggg
     1381 cgttactgtg ggcagaaaac accaggtcga atccactcct catccggcat cctgtccatg
     1441 gttttctaca cggacagcgc catagccaaa gaaggcttct cggcaaacta cagtgtctca
     1501 caaagcagtg tttcagaaga cttcaagtgt atggaagctc tgggcatgga atccggagag
     1561 attcactctg accagatcac agcttcttcc cagtacagca ccaactggtc tgccgaacgt
     1621 tcccgcctcc actatcctga gaatgggtgg acccctggag aggattccta cagagagtgg
     1681 atccaggtag acctgggcct tctgcgcttt gtcactgctg tcgggacaca gggagctatt
     1741 tcaaaggaaa ccaagaagaa atactatgtc aagacataca gaatagacat tagctccaac
     1801 ggggaagact ggatcaccat aaaagaagga aataaacctg ttatctttca gggaaacacc
     1861 aaccccacag atgttgtgat tggagttttc cccaaacccc tgataactcg atttgtccga
     1921 atcaaacctg tgacttggga aactggcata tctatgagat ttgaagtcta tggctgcaag
     1981 ataacagatt atccttgctc tggaatgttg ggtatggtgt ccggacttat ttccgactcc
     2041 cagatcacag catccaacca aggggacagg aactggatgc ctgaaaatat ccgcctggtg
     2101 accagccgct cgggctgggc actgccgccc gccccgcacc cgtacgtgaa cgagtggctt
     2161 caggtggacc tggcggagga gaagatcgtg cggggcgtca tcattcaggg gggcaaacac
     2221 cgggagaaca aggtgttcat gaggaaattc aagatcgggt acagcaacaa cggctcggac
     2281 tggaagatgg tcatggacga cagcaagcgc aaggccaagt cttttgaagg caacaacaac
     2341 tatgacacac ctgagctacg gacatttcca cccctttcca cacgattcat caggatctac
     2401 cctgagagag ccactcacgg cggactaggg ctacggatgg agctgctggg ctgtgaggtg
     2461 gaagcaccta cagctggacc gaccactccc aatgggaacc tggtggatga atgtgatgac
     2521 gaccaggcca actgccacag cggaacaggt ggtaccactg tgctgaccac agaaaagcca
     2581 accgtgatag acagcactat acaatcagag tttccaacat atggttttaa ctgtgagttt
     2641 ggctggggtt ctcataagac gttctgtcac tgggagcatg acagtcacgt gcagctcaga
     2701 tggagtgtgt tgaccagcaa gacgggaccg attcaggatc acacaggaga tggcaacttc
     2761 atctactccc aagctgatga aaaccagaaa ggcaaagtgg ctcgcctggt gagccctgtg
     2821 gtttattccc agaactctgc ccactgcatg accttctggt atcacatgtc tggttcacac
     2881 gtgggcacgc tgagggtcaa actgcgctac cagaagccag aggaatatga ccagttggtc
     2941 tggatggcca tcggacacca aggggaccac tggaaagagg ggcgtgtcct actgcacaaa
     3001 tctctgaaac tttaccaggt gatttttgag ggtgaaatcg gaaaaggcaa ccttggcggg
     3061 attgcagtgg atgacattag tatcaataac cacatccctc aagaggactg cacaaaacca
     3121 gcagacctgg ataaaaagaa cccggaaagt aaaatcgacg aaacagggag caccccagga
     3181 taccaaggca cgggagacgg tgatgagaac atctccagga agccgggcaa cgtgttgaag
     3241 accctggacc ctatcctcat caccatcatc gccatgagtg ccctgggcgt cctcctgggc
     3301 gccgtctgcg gggtcgtgct gtactgtgcc tgctggcaca acgggatgtc ggaaagaaac
     3361 ttatctgccc tggagaacta taacttcgaa cttgtggatg gcgtgaagtt gaaaaaagac
     3421 aaactgaatc cacagagtac ttactcggag gcatgaaggc agacagaggt gaccaggcaa
     3481 gcaggagagt ggagcggagg acagagcttg agctggggac cggctgatct ttcactgttc
     3541 gggctgggaa gtgcgttaat gatgccaagc caggttttct caggagcttc gatgagttcg
     3601 gccgacagac acgaacgact tagctgtgtt aacaatcgga atcctgtaca gtcagcttcc
     3661 ttctgttggt ttcttttgaa taatcaaatg ctggtgttga gaccaagtat gattgactta
     3721 ataattcatt tggactcccc tttcccttct ctctctccct cttctggatt cttttcggaa
     3781 actgcaaaat ccaagatgct ggcaccaagt gtattcagtg gggccctttt gacggacatg
     3841 ctacctgcag cccagtgccc agaatatatt cgagtaacca catttcagtg gactcctgaa
     3901 gctggccttg tgtatcatcg cccgcgttgt gcataggcaa agaaggagta ggatgttttc
     3961 agttaaagta ccgtagcctc agtaccagtc tagcgtgtca gctctgttta cgaagcaata
     4021 ccgtcagatt tcctcgatgt tttccagtgt tgtactcaac cttgtgctgt gaactccata
     4081 cagaaaactg tgccatcacc aaacactgct ggcaactggg tgtgatgcca acaaccacaa
     4141 cgaagaatcc ttggcactgg ctggtctacg tcctctcaag tgcctttttg tttgtactgg
     4201 ttctcattgt gttacattaa cccgccctgt ttctcgctgg tgaaagccct cctcttgaat
     4261 cagaccctgg tggcccactg actaagaaga aagtatattt tagtgtgaga tatcagcctc
     4321 cgggtaggca agggctccga agatttggca acgtggctta attgttctgc tttttccgta
     4381 gttcaatttc atgtctcttg acccttttgt ataaagctgc aatattctct tactgttctt
     4441 tcatatggaa tgtattttca aatgtaaact ctttctctcc tatctctctg tctttttcct
     4501 ctcttaggat ttaagcattt gccattatcc agaaaagaaa cttgcagctt taacctgctg
     4561 gtaatggcga acaattttac tagactttat gttggaaaat aaataaataa gggaaattcc
     4621 taactttgcc ctccaaagtc taactttggt ttccttgtta actggttaaa gtgacagtat
     4681 cttttttcct aagccatttg tctgtctatt ccaatcaaaa tgatcttcaa tagaaatgtt
     4741 tgcatttaat aaaaatagtg ataagttgag agaagaaata atactaattg gctttcaagt
     4801 gagacccaaa ggaatagagt tctccccata tccaaaaaca ggagattttt acatccaaat
     4861 acacaaaaat gacccgtgag agccttcttg ttttggtatt gagtcagata agggaagtgg
     4921 aagaaagaac agttaattta agaaaacgac aataaatcat ggtgcctggg gatgaagtat
     4981 tttaagatga cagaggggaa gaaaatgagt aaagtcaaaa caaatgtttt taaaaattca
     5041 gtctgcagca accctgaaat aacagagact tgaatgaatg cttctagaaa cttccagtgc
     5101 ctcacaaaca aaaagcctgc cttggggctg ttaagaccta agcctccaat ggcacagaga
     5161 agtaaatatc ttatcaggca gcattgaatt aactcaaaga agctttggtt gttttccgtg
     5221 tatttgtgcc atgcggcgtt gtaggtaaga acttcctccc ttccggcact gctgtaggtc
     5281 tcactcgaat atatttgtgg gagtcacatt gcatcatgga ggggaaagtc cattcatcct
     5341 ggtctaattg aattgagaat gccttttgtt tccaggaaag tattgatcac tatgaaagaa
     5401 gaatagattc ttatccccag aggcatccat tcagccgtta taatcgtacc aggatgaaag
     5461 cattaagact tgatttacct ttaaggcaac agacttacag ttgtcttcag ccaaggaaaa
     5521 atgatactgc aactttaaat ttgaaagtat cttgcactga taaatatatt taaaaattat
     5581 atgtttataa agttattaat ttgtaaaggc agtgttacaa aatgttcagt ttatattgtt
     5641 ttagattgtt tcgtaatttt aaaaggtgta aaataacata tttttttctt tattgagatc
     5701 tataaaactt tctgtagtaa aatgttttca ttttactggt atattattgc ttcatgtttt
     5761 gtaccatcat aaaattttgt gcaaattttt tttacagaaa tttttatttt ctatgacaat
     5821 atgacacttg taaattgttg attcaaaatg aacagcgaag ccttaacttt aaatgacatt
     5881 tgtattctca gacactgagt tgcataaaaa accacacaga actgaactgt aacttaaatt
     5941 ccaaactatg actactacat tccaaagaaa cagttgaatt aaacattttc ctaaaata
//
LOCUS       XM_032618639            5715 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X9, mRNA.
ACCESSION   XM_032618639
VERSION     XM_032618639.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5715
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5715
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 68 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746846"
     CDS             507..3173
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X6"
                     /protein_id="XP_032474530.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEGGTTVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKT
                     FCHWEHDSHVQLRWSVLTSKTGPIQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQN
                     SAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLK
                     LYQVIFEGEIGKGNLGGIAVDDISINNHIPQEDCTKPADLDKKNPESKIDETGSTPGY
                     QGTGDGDENISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACWHNGMSER
                     NLSALENYNFELVDGVKLKKDKLNPQSTYSEA"
     misc_feature    585..926
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(612..614,618..620,624..626,708..710,726..728,
                     837..839,909..911,915..917,921..926)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    945..1298
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(969..971,975..977,981..983,1062..1064,1077..1079,
                     1209..1211,1281..1283,1287..1289,1293..1298)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1335..1775
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1452..1454,1536..1538,1563..1565)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    1809..2252
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1938..1940,2013..2015,2034..2036)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2349..2828
                     /gene="NRP1"
                     /note="MAM domain, meprin/A5/mu; Region: MAM; pfam00629"
                     /db_xref="CDD:459878"
     misc_feature    2934..3170
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 tggtgaaaca actccgtctc ccgctcatct tttcattgct tgctcctctc cttcgcgcag
       61 acacctcgga cctcccctgg gcgccagctc ctcggctcca acgcgtccag aaacaagccg
      121 gatttttttt ttttctttct ttctggaaat tggcgttggt gtgcgtttct ctacgtctct
      181 cctcctccca ccaccaccac cacccccccc tttttttttc tgagacatgg cccgggcagt
      241 ggctcctgga agaggaacaa gtgtgggaaa agagagagga aaccggagct aaatgacagg
      301 atgcaggcga cttgagacac aaaaagagga gggtttctct cggatcacgg cattgcctcg
      361 ccgctttcct ttctccaaga cggactgagg attttacagc tctgggagga gtggaagcgc
      421 tccggattgt tgagatcgcc ccggtgctct gttttccctg cacgttcggt tctcccgcgt
      481 ctgcccggga acccagcgaa gggaggatgg agagggggct accgctcctg tgcgccgcgc
      541 tcgccctggt cctctcggcg gccggcgctt ttcgcaacga taaatgtgga gatactataa
      601 aaatcgaaag ccccgggtac cttacatctc ctggttatcc tcattcttat cacccaagtg
      661 aaaaatgtga atggctgatt caggctcctg acccatatca gagaattatg attaacttca
      721 accctcactt cgatttggaa gacagagact gcaagtatga ctatgtggaa gtcatcgatg
      781 gagagaatga aaatgggcgt ttatggggaa agttctgtgg aaagattgcc ccttctcctg
      841 tcgtgtcttc agggccattt ctctttatca agtttgtctc tgattatgag acacacgggg
      901 caggattttc catacgttat gaaattttca agagaggtcc tgaatgttcc cagaactaca
      961 caacacctag tggggtgata aaatccccag gattccctga aaaatatccc aacagcctag
     1021 aatgcaccta tattatcttt gcaccaaaga tgtcggagat tatcctggaa tttgaaagct
     1081 ttgacctgga ggctgactca aatcctcctg gggggatgtt ttgccgctat gaccggctag
     1141 aaatctggga tggattccct gatgttggtc cccacattgg gcgttactgt gggcagaaaa
     1201 caccaggtcg aatccactcc tcatccggca tcctgtccat ggttttctac acggacagcg
     1261 ccatagccaa agaaggcttc tcggcaaact acagtgtctc acaaagcagt gtttcagaag
     1321 acttcaagtg tatggaagct ctgggcatgg aatccggaga gattcactct gaccagatca
     1381 cagcttcttc ccagtacagc accaactggt ctgccgaacg ttcccgcctc cactatcctg
     1441 agaatgggtg gacccctgga gaggattcct acagagagtg gatccaggta gacctgggcc
     1501 ttctgcgctt tgtcactgct gtcgggacac agggagctat ttcaaaggaa accaagaaga
     1561 aatactatgt caagacatac agaatagaca ttagctccaa cggggaagac tggatcacca
     1621 taaaagaagg aaataaacct gttatctttc agggaaacac caaccccaca gatgttgtga
     1681 ttggagtttt ccccaaaccc ctgataactc gatttgtccg aatcaaacct gtgacttggg
     1741 aaactggcat atctatgaga tttgaagtct atggctgcaa gataacagat tatccttgct
     1801 ctggaatgtt gggtatggtg tccggactta tttccgactc ccagatcaca gcatccaacc
     1861 aaggggacag gaactggatg cctgaaaata tccgcctggt gaccagccgc tcgggctggg
     1921 cactgccgcc cgccccgcac ccgtacgtga acgagtggct tcaggtggac ctggcggagg
     1981 agaagatcgt gcggggcgtc atcattcagg ggggcaaaca ccgggagaac aaggtgttca
     2041 tgaggaaatt caagatcggg tacagcaaca acggctcgga ctggaagatg gtcatggacg
     2101 acagcaagcg caaggccaag tcttttgaag gcaacaacaa ctatgacaca cctgagctac
     2161 ggacatttcc acccctttcc acacgattca tcaggatcta ccctgagaga gccactcacg
     2221 gcggactagg gctacggatg gagctgctgg gctgtgaggt ggaaggtggt accactgtgc
     2281 tgaccacaga aaagccaacc gtgatagaca gcactataca atcagagttt ccaacatatg
     2341 gttttaactg tgagtttggc tggggttctc ataagacgtt ctgtcactgg gagcatgaca
     2401 gtcacgtgca gctcagatgg agtgtgttga ccagcaagac gggaccgatt caggatcaca
     2461 caggagatgg caacttcatc tactcccaag ctgatgaaaa ccagaaaggc aaagtggctc
     2521 gcctggtgag ccctgtggtt tattcccaga actctgccca ctgcatgacc ttctggtatc
     2581 acatgtctgg ttcacacgtg ggcacgctga gggtcaaact gcgctaccag aagccagagg
     2641 aatatgacca gttggtctgg atggccatcg gacaccaagg ggaccactgg aaagaggggc
     2701 gtgtcctact gcacaaatct ctgaaacttt accaggtgat ttttgagggt gaaatcggaa
     2761 aaggcaacct tggcgggatt gcagtggatg acattagtat caataaccac atccctcaag
     2821 aggactgcac aaaaccagca gacctggata aaaagaaccc ggaaagtaaa atcgacgaaa
     2881 cagggagcac cccaggatac caaggcacgg gagacggtga tgagaacatc tccaggaagc
     2941 cgggcaacgt gttgaagacc ctggacccta tcctcatcac catcatcgcc atgagtgccc
     3001 tgggcgtcct cctgggcgcc gtctgcgggg tcgtgctgta ctgtgcctgc tggcacaacg
     3061 ggatgtcgga aagaaactta tctgccctgg agaactataa cttcgaactt gtggatggcg
     3121 tgaagttgaa aaaagacaaa ctgaatccac agagtactta ctcggaggca tgaaggcaga
     3181 cagaggtgac caggcaagca ggagagtgga gcggaggaca gagcttgagc tggggaccgg
     3241 ctgatctttc actgttcggg ctgggaagtg cgttaatgat gccaagccag gttttctcag
     3301 gagcttcgat gagttcggcc gacagacacg aacgacttag ctgtgttaac aatcggaatc
     3361 ctgtacagtc agcttccttc tgttggtttc ttttgaataa tcaaatgctg gtgttgagac
     3421 caagtatgat tgacttaata attcatttgg actccccttt cccttctctc tctccctctt
     3481 ctggattctt ttcggaaact gcaaaatcca agatgctggc accaagtgta ttcagtgggg
     3541 cccttttgac ggacatgcta cctgcagccc agtgcccaga atatattcga gtaaccacat
     3601 ttcagtggac tcctgaagct ggccttgtgt atcatcgccc gcgttgtgca taggcaaaga
     3661 aggagtagga tgttttcagt taaagtaccg tagcctcagt accagtctag cgtgtcagct
     3721 ctgtttacga agcaataccg tcagatttcc tcgatgtttt ccagtgttgt actcaacctt
     3781 gtgctgtgaa ctccatacag aaaactgtgc catcaccaaa cactgctggc aactgggtgt
     3841 gatgccaaca accacaacga agaatccttg gcactggctg gtctacgtcc tctcaagtgc
     3901 ctttttgttt gtactggttc tcattgtgtt acattaaccc gccctgtttc tcgctggtga
     3961 aagccctcct cttgaatcag accctggtgg cccactgact aagaagaaag tatattttag
     4021 tgtgagatat cagcctccgg gtaggcaagg gctccgaaga tttggcaacg tggcttaatt
     4081 gttctgcttt ttccgtagtt caatttcatg tctcttgacc cttttgtata aagctgcaat
     4141 attctcttac tgttctttca tatggaatgt attttcaaat gtaaactctt tctctcctat
     4201 ctctctgtct ttttcctctc ttaggattta agcatttgcc attatccaga aaagaaactt
     4261 gcagctttaa cctgctggta atggcgaaca attttactag actttatgtt ggaaaataaa
     4321 taaataaggg aaattcctaa ctttgccctc caaagtctaa ctttggtttc cttgttaact
     4381 ggttaaagtg acagtatctt ttttcctaag ccatttgtct gtctattcca atcaaaatga
     4441 tcttcaatag aaatgtttgc atttaataaa aatagtgata agttgagaga agaaataata
     4501 ctaattggct ttcaagtgag acccaaagga atagagttct ccccatatcc aaaaacagga
     4561 gatttttaca tccaaataca caaaaatgac ccgtgagagc cttcttgttt tggtattgag
     4621 tcagataagg gaagtggaag aaagaacagt taatttaaga aaacgacaat aaatcatggt
     4681 gcctggggat gaagtatttt aagatgacag aggggaagaa aatgagtaaa gtcaaaacaa
     4741 atgtttttaa aaattcagtc tgcagcaacc ctgaaataac agagacttga atgaatgctt
     4801 ctagaaactt ccagtgcctc acaaacaaaa agcctgcctt ggggctgtta agacctaagc
     4861 ctccaatggc acagagaagt aaatatctta tcaggcagca ttgaattaac tcaaagaagc
     4921 tttggttgtt ttccgtgtat ttgtgccatg cggcgttgta ggtaagaact tcctcccttc
     4981 cggcactgct gtaggtctca ctcgaatata tttgtgggag tcacattgca tcatggaggg
     5041 gaaagtccat tcatcctggt ctaattgaat tgagaatgcc ttttgtttcc aggaaagtat
     5101 tgatcactat gaaagaagaa tagattctta tccccagagg catccattca gccgttataa
     5161 tcgtaccagg atgaaagcat taagacttga tttaccttta aggcaacaga cttacagttg
     5221 tcttcagcca aggaaaaatg atactgcaac tttaaatttg aaagtatctt gcactgataa
     5281 atatatttaa aaattatatg tttataaagt tattaatttg taaaggcagt gttacaaaat
     5341 gttcagttta tattgtttta gattgtttcg taattttaaa aggtgtaaaa taacatattt
     5401 ttttctttat tgagatctat aaaactttct gtagtaaaat gttttcattt tactggtata
     5461 ttattgcttc atgttttgta ccatcataaa attttgtgca aatttttttt acagaaattt
     5521 ttattttcta tgacaatatg acacttgtaa attgttgatt caaaatgaac agcgaagcct
     5581 taactttaaa tgacatttgt attctcagac actgagttgc ataaaaaacc acacagaact
     5641 gaactgtaac ttaaattcca aactatgact actacattcc aaagaaacag ttgaattaaa
     5701 cattttccta aaata
//
LOCUS       XM_032618646            5610 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X10, mRNA.
ACCESSION   XM_032618646
VERSION     XM_032618646.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5610
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5610
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 57 long SRA reads, 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746846"
     CDS             507..3068
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X7"
                     /protein_id="XP_032474537.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGT
                     TVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGP
                     IQDHTGDGNFIYSQADENQKGKVARLVIFEGEIGKGNLGGIAVDDISINNHIPQEDCT
                     KPADLDKKNPESKIDETGSTPGYQGTGDGDENISRKPGNVLKTLDPILITIIAMSALG
                     VLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNPQSTYSEA"
     misc_feature    585..926
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(612..614,618..620,624..626,708..710,726..728,
                     837..839,909..911,915..917,921..926)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    945..1298
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(969..971,975..977,981..983,1062..1064,1077..1079,
                     1209..1211,1281..1283,1287..1289,1293..1298)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1335..1775
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1452..1454,1536..1538,1563..1565)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    1809..2252
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1938..1940,2013..2015,2034..2036)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2439..2708
                     /gene="NRP1"
                     /note="Domain in meprin, A5, receptor protein tyrosine
                     phosphatase mu (and others); Region: MAM; smart00137"
                     /db_xref="CDD:214533"
     misc_feature    2829..3065
                     /gene="NRP1"
                     /note="C-terminal domain of neuropilin glycoprotein;
                     Region: DUF3481; pfam11980"
                     /db_xref="CDD:403259"
ORIGIN      
        1 tggtgaaaca actccgtctc ccgctcatct tttcattgct tgctcctctc cttcgcgcag
       61 acacctcgga cctcccctgg gcgccagctc ctcggctcca acgcgtccag aaacaagccg
      121 gatttttttt ttttctttct ttctggaaat tggcgttggt gtgcgtttct ctacgtctct
      181 cctcctccca ccaccaccac cacccccccc tttttttttc tgagacatgg cccgggcagt
      241 ggctcctgga agaggaacaa gtgtgggaaa agagagagga aaccggagct aaatgacagg
      301 atgcaggcga cttgagacac aaaaagagga gggtttctct cggatcacgg cattgcctcg
      361 ccgctttcct ttctccaaga cggactgagg attttacagc tctgggagga gtggaagcgc
      421 tccggattgt tgagatcgcc ccggtgctct gttttccctg cacgttcggt tctcccgcgt
      481 ctgcccggga acccagcgaa gggaggatgg agagggggct accgctcctg tgcgccgcgc
      541 tcgccctggt cctctcggcg gccggcgctt ttcgcaacga taaatgtgga gatactataa
      601 aaatcgaaag ccccgggtac cttacatctc ctggttatcc tcattcttat cacccaagtg
      661 aaaaatgtga atggctgatt caggctcctg acccatatca gagaattatg attaacttca
      721 accctcactt cgatttggaa gacagagact gcaagtatga ctatgtggaa gtcatcgatg
      781 gagagaatga aaatgggcgt ttatggggaa agttctgtgg aaagattgcc ccttctcctg
      841 tcgtgtcttc agggccattt ctctttatca agtttgtctc tgattatgag acacacgggg
      901 caggattttc catacgttat gaaattttca agagaggtcc tgaatgttcc cagaactaca
      961 caacacctag tggggtgata aaatccccag gattccctga aaaatatccc aacagcctag
     1021 aatgcaccta tattatcttt gcaccaaaga tgtcggagat tatcctggaa tttgaaagct
     1081 ttgacctgga ggctgactca aatcctcctg gggggatgtt ttgccgctat gaccggctag
     1141 aaatctggga tggattccct gatgttggtc cccacattgg gcgttactgt gggcagaaaa
     1201 caccaggtcg aatccactcc tcatccggca tcctgtccat ggttttctac acggacagcg
     1261 ccatagccaa agaaggcttc tcggcaaact acagtgtctc acaaagcagt gtttcagaag
     1321 acttcaagtg tatggaagct ctgggcatgg aatccggaga gattcactct gaccagatca
     1381 cagcttcttc ccagtacagc accaactggt ctgccgaacg ttcccgcctc cactatcctg
     1441 agaatgggtg gacccctgga gaggattcct acagagagtg gatccaggta gacctgggcc
     1501 ttctgcgctt tgtcactgct gtcgggacac agggagctat ttcaaaggaa accaagaaga
     1561 aatactatgt caagacatac agaatagaca ttagctccaa cggggaagac tggatcacca
     1621 taaaagaagg aaataaacct gttatctttc agggaaacac caaccccaca gatgttgtga
     1681 ttggagtttt ccccaaaccc ctgataactc gatttgtccg aatcaaacct gtgacttggg
     1741 aaactggcat atctatgaga tttgaagtct atggctgcaa gataacagat tatccttgct
     1801 ctggaatgtt gggtatggtg tccggactta tttccgactc ccagatcaca gcatccaacc
     1861 aaggggacag gaactggatg cctgaaaata tccgcctggt gaccagccgc tcgggctggg
     1921 cactgccgcc cgccccgcac ccgtacgtga acgagtggct tcaggtggac ctggcggagg
     1981 agaagatcgt gcggggcgtc atcattcagg ggggcaaaca ccgggagaac aaggtgttca
     2041 tgaggaaatt caagatcggg tacagcaaca acggctcgga ctggaagatg gtcatggacg
     2101 acagcaagcg caaggccaag tcttttgaag gcaacaacaa ctatgacaca cctgagctac
     2161 ggacatttcc acccctttcc acacgattca tcaggatcta ccctgagaga gccactcacg
     2221 gcggactagg gctacggatg gagctgctgg gctgtgaggt ggaagcacct acagctggac
     2281 cgaccactcc caatgggaac ctggtggatg aatgtgatga cgaccaggcc aactgccaca
     2341 gcggaacagg tgatgacttc cagctcacag gtggtaccac tgtgctgacc acagaaaagc
     2401 caaccgtgat agacagcact atacaatcag agtttccaac atatggtttt aactgtgagt
     2461 ttggctgggg ttctcataag acgttctgtc actgggagca tgacagtcac gtgcagctca
     2521 gatggagtgt gttgaccagc aagacgggac cgattcagga tcacacagga gatggcaact
     2581 tcatctactc ccaagctgat gaaaaccaga aaggcaaagt ggctcgcctg gtgatttttg
     2641 agggtgaaat cggaaaaggc aaccttggcg ggattgcagt ggatgacatt agtatcaata
     2701 accacatccc tcaagaggac tgcacaaaac cagcagacct ggataaaaag aacccggaaa
     2761 gtaaaatcga cgaaacaggg agcaccccag gataccaagg cacgggagac ggtgatgaga
     2821 acatctccag gaagccgggc aacgtgttga agaccctgga ccctatcctc atcaccatca
     2881 tcgccatgag tgccctgggc gtcctcctgg gcgccgtctg cggggtcgtg ctgtactgtg
     2941 cctgctggca caacgggatg tcggaaagaa acttatctgc cctggagaac tataacttcg
     3001 aacttgtgga tggcgtgaag ttgaaaaaag acaaactgaa tccacagagt acttactcgg
     3061 aggcatgaag gcagacagag gtgaccaggc aagcaggaga gtggagcgga ggacagagct
     3121 tgagctgggg accggctgat ctttcactgt tcgggctggg aagtgcgtta atgatgccaa
     3181 gccaggtttt ctcaggagct tcgatgagtt cggccgacag acacgaacga cttagctgtg
     3241 ttaacaatcg gaatcctgta cagtcagctt ccttctgttg gtttcttttg aataatcaaa
     3301 tgctggtgtt gagaccaagt atgattgact taataattca tttggactcc cctttccctt
     3361 ctctctctcc ctcttctgga ttcttttcgg aaactgcaaa atccaagatg ctggcaccaa
     3421 gtgtattcag tggggccctt ttgacggaca tgctacctgc agcccagtgc ccagaatata
     3481 ttcgagtaac cacatttcag tggactcctg aagctggcct tgtgtatcat cgcccgcgtt
     3541 gtgcataggc aaagaaggag taggatgttt tcagttaaag taccgtagcc tcagtaccag
     3601 tctagcgtgt cagctctgtt tacgaagcaa taccgtcaga tttcctcgat gttttccagt
     3661 gttgtactca accttgtgct gtgaactcca tacagaaaac tgtgccatca ccaaacactg
     3721 ctggcaactg ggtgtgatgc caacaaccac aacgaagaat ccttggcact ggctggtcta
     3781 cgtcctctca agtgcctttt tgtttgtact ggttctcatt gtgttacatt aacccgccct
     3841 gtttctcgct ggtgaaagcc ctcctcttga atcagaccct ggtggcccac tgactaagaa
     3901 gaaagtatat tttagtgtga gatatcagcc tccgggtagg caagggctcc gaagatttgg
     3961 caacgtggct taattgttct gctttttccg tagttcaatt tcatgtctct tgaccctttt
     4021 gtataaagct gcaatattct cttactgttc tttcatatgg aatgtatttt caaatgtaaa
     4081 ctctttctct cctatctctc tgtctttttc ctctcttagg atttaagcat ttgccattat
     4141 ccagaaaaga aacttgcagc tttaacctgc tggtaatggc gaacaatttt actagacttt
     4201 atgttggaaa ataaataaat aagggaaatt cctaactttg ccctccaaag tctaactttg
     4261 gtttccttgt taactggtta aagtgacagt atcttttttc ctaagccatt tgtctgtcta
     4321 ttccaatcaa aatgatcttc aatagaaatg tttgcattta ataaaaatag tgataagttg
     4381 agagaagaaa taatactaat tggctttcaa gtgagaccca aaggaataga gttctcccca
     4441 tatccaaaaa caggagattt ttacatccaa atacacaaaa atgacccgtg agagccttct
     4501 tgttttggta ttgagtcaga taagggaagt ggaagaaaga acagttaatt taagaaaacg
     4561 acaataaatc atggtgcctg gggatgaagt attttaagat gacagagggg aagaaaatga
     4621 gtaaagtcaa aacaaatgtt tttaaaaatt cagtctgcag caaccctgaa ataacagaga
     4681 cttgaatgaa tgcttctaga aacttccagt gcctcacaaa caaaaagcct gccttggggc
     4741 tgttaagacc taagcctcca atggcacaga gaagtaaata tcttatcagg cagcattgaa
     4801 ttaactcaaa gaagctttgg ttgttttccg tgtatttgtg ccatgcggcg ttgtaggtaa
     4861 gaacttcctc ccttccggca ctgctgtagg tctcactcga atatatttgt gggagtcaca
     4921 ttgcatcatg gaggggaaag tccattcatc ctggtctaat tgaattgaga atgccttttg
     4981 tttccaggaa agtattgatc actatgaaag aagaatagat tcttatcccc agaggcatcc
     5041 attcagccgt tataatcgta ccaggatgaa agcattaaga cttgatttac ctttaaggca
     5101 acagacttac agttgtcttc agccaaggaa aaatgatact gcaactttaa atttgaaagt
     5161 atcttgcact gataaatata tttaaaaatt atatgtttat aaagttatta atttgtaaag
     5221 gcagtgttac aaaatgttca gtttatattg ttttagattg tttcgtaatt ttaaaaggtg
     5281 taaaataaca tatttttttc tttattgaga tctataaaac tttctgtagt aaaatgtttt
     5341 cattttactg gtatattatt gcttcatgtt ttgtaccatc ataaaatttt gtgcaaattt
     5401 tttttacaga aatttttatt ttctatgaca atatgacact tgtaaattgt tgattcaaaa
     5461 tgaacagcga agccttaact ttaaatgaca tttgtattct cagacactga gttgcataaa
     5521 aaaccacaca gaactgaact gtaacttaaa ttccaaacta tgactactac attccaaaga
     5581 aacagttgaa ttaaacattt tcctaaaata
//
LOCUS       XM_032618652            5723 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus neuropilin 1 (NRP1), transcript variant
            X11, mRNA.
ACCESSION   XM_032618652
VERSION     XM_032618652.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5723
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5723
                     /gene="NRP1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 53 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116746846"
     CDS             507..2963
                     /gene="NRP1"
                     /codon_start=1
                     /product="neuropilin-1 isoform X8"
                     /protein_id="XP_032474543.1"
                     /db_xref="GeneID:116746846"
                     /translation="MERGLPLLCAALALVLSAAGAFRNDKCGDTIKIESPGYLTSPGY
                     PHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENENGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEADSNPPGGMFCRYDRLEIWDGFP
                     DVGPHIGRYCGQKTPGRIHSSSGILSMVFYTDSAIAKEGFSANYSVSQSSVSEDFKCM
                     EALGMESGEIHSDQITASSQYSTNWSAERSRLHYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRIDISSNGEDWITIKEGNKPVIFQGNTNPTDVVI
                     GVFPKPLITRFVRIKPVTWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRSGWALPPAPHPYVNEWLQVDLAEEKIVRGVIIQGGKHREN
                     KVFMRKFKIGYSNNGSDWKMVMDDSKRKAKSFEGNNNYDTPELRTFPPLSTRFIRIYP
                     ERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGT
                     TVLTTEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHVQLRWSVLTSKTGP
                     IQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKL
                     RYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQNQQTWIKRTRKVKSTKQGAP
                     QDTKARETVMRTSPGSRATC"
     misc_feature    585..926
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(612..614,618..620,624..626,708..710,726..728,
                     837..839,909..911,915..917,921..926)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    945..1298
                     /gene="NRP1"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; Region: CUB;
                     cd00041"
                     /db_xref="CDD:238001"
     misc_feature    order(969..971,975..977,981..983,1062..1064,1077..1079,
                     1209..1211,1281..1283,1287..1289,1293..1298)
                     /gene="NRP1"
                     /note="heterodimerization interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238001"
     misc_feature    1335..1775
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1452..1454,1536..1538,1563..1565)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    1809..2252
                     /gene="NRP1"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; Region: FA58C;
                     cd00057"
                     /db_xref="CDD:238014"
     misc_feature    order(1938..1940,2013..2015,2034..2036)
                     /gene="NRP1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:238014"
     misc_feature    2454..2840
                     /gene="NRP1"
                     /note="MAM domain, meprin/A5/mu; Region: MAM; pfam00629"
                     /db_xref="CDD:459878"
ORIGIN      
        1 tggtgaaaca actccgtctc ccgctcatct tttcattgct tgctcctctc cttcgcgcag
       61 acacctcgga cctcccctgg gcgccagctc ctcggctcca acgcgtccag aaacaagccg
      121 gatttttttt ttttctttct ttctggaaat tggcgttggt gtgcgtttct ctacgtctct
      181 cctcctccca ccaccaccac cacccccccc tttttttttc tgagacatgg cccgggcagt
      241 ggctcctgga agaggaacaa gtgtgggaaa agagagagga aaccggagct aaatgacagg
      301 atgcaggcga cttgagacac aaaaagagga gggtttctct cggatcacgg cattgcctcg
      361 ccgctttcct ttctccaaga cggactgagg attttacagc tctgggagga gtggaagcgc
      421 tccggattgt tgagatcgcc ccggtgctct gttttccctg cacgttcggt tctcccgcgt
      481 ctgcccggga acccagcgaa gggaggatgg agagggggct accgctcctg tgcgccgcgc
      541 tcgccctggt cctctcggcg gccggcgctt ttcgcaacga taaatgtgga gatactataa
      601 aaatcgaaag ccccgggtac cttacatctc ctggttatcc tcattcttat cacccaagtg
      661 aaaaatgtga atggctgatt caggctcctg acccatatca gagaattatg attaacttca
      721 accctcactt cgatttggaa gacagagact gcaagtatga ctatgtggaa gtcatcgatg
      781 gagagaatga aaatgggcgt ttatggggaa agttctgtgg aaagattgcc ccttctcctg
      841 tcgtgtcttc agggccattt ctctttatca agtttgtctc tgattatgag acacacgggg
      901 caggattttc catacgttat gaaattttca agagaggtcc tgaatgttcc cagaactaca
      961 caacacctag tggggtgata aaatccccag gattccctga aaaatatccc aacagcctag
     1021 aatgcaccta tattatcttt gcaccaaaga tgtcggagat tatcctggaa tttgaaagct
     1081 ttgacctgga ggctgactca aatcctcctg gggggatgtt ttgccgctat gaccggctag
     1141 aaatctggga tggattccct gatgttggtc cccacattgg gcgttactgt gggcagaaaa
     1201 caccaggtcg aatccactcc tcatccggca tcctgtccat ggttttctac acggacagcg
     1261 ccatagccaa agaaggcttc tcggcaaact acagtgtctc acaaagcagt gtttcagaag
     1321 acttcaagtg tatggaagct ctgggcatgg aatccggaga gattcactct gaccagatca
     1381 cagcttcttc ccagtacagc accaactggt ctgccgaacg ttcccgcctc cactatcctg
     1441 agaatgggtg gacccctgga gaggattcct acagagagtg gatccaggta gacctgggcc
     1501 ttctgcgctt tgtcactgct gtcgggacac agggagctat ttcaaaggaa accaagaaga
     1561 aatactatgt caagacatac agaatagaca ttagctccaa cggggaagac tggatcacca
     1621 taaaagaagg aaataaacct gttatctttc agggaaacac caaccccaca gatgttgtga
     1681 ttggagtttt ccccaaaccc ctgataactc gatttgtccg aatcaaacct gtgacttggg
     1741 aaactggcat atctatgaga tttgaagtct atggctgcaa gataacagat tatccttgct
     1801 ctggaatgtt gggtatggtg tccggactta tttccgactc ccagatcaca gcatccaacc
     1861 aaggggacag gaactggatg cctgaaaata tccgcctggt gaccagccgc tcgggctggg
     1921 cactgccgcc cgccccgcac ccgtacgtga acgagtggct tcaggtggac ctggcggagg
     1981 agaagatcgt gcggggcgtc atcattcagg ggggcaaaca ccgggagaac aaggtgttca
     2041 tgaggaaatt caagatcggg tacagcaaca acggctcgga ctggaagatg gtcatggacg
     2101 acagcaagcg caaggccaag tcttttgaag gcaacaacaa ctatgacaca cctgagctac
     2161 ggacatttcc acccctttcc acacgattca tcaggatcta ccctgagaga gccactcacg
     2221 gcggactagg gctacggatg gagctgctgg gctgtgaggt ggaagcacct acagctggac
     2281 cgaccactcc caatgggaac ctggtggatg aatgtgatga cgaccaggcc aactgccaca
     2341 gcggaacagg tgatgacttc cagctcacag gtggtaccac tgtgctgacc acagaaaagc
     2401 caaccgtgat agacagcact atacaatcag agtttccaac atatggtttt aactgtgagt
     2461 ttggctgggg ttctcataag acgttctgtc actgggagca tgacagtcac gtgcagctca
     2521 gatggagtgt gttgaccagc aagacgggac cgattcagga tcacacagga gatggcaact
     2581 tcatctactc ccaagctgat gaaaaccaga aaggcaaagt ggctcgcctg gtgagccctg
     2641 tggtttattc ccagaactct gcccactgca tgaccttctg gtatcacatg tctggttcac
     2701 acgtgggcac gctgagggtc aaactgcgct accagaagcc agaggaatat gaccagttgg
     2761 tctggatggc catcggacac caaggggacc actggaaaga ggggcgtgtc ctactgcaca
     2821 aatctctgaa actttaccag aaccagcaga cctggataaa aagaacccgg aaagtaaaat
     2881 cgacgaaaca gggagcaccc caggatacca aggcacggga gacggtgatg agaacatctc
     2941 caggaagccg ggcaacgtgt tgaagaccct ggaccctatc ctcatcacca tcatcgccat
     3001 gagtgccctg ggcgtcctcc tgggcgccgt ctgcggggtc gtgctgtact gtgcctgctg
     3061 gcacaacggg atgtcggaaa gaaacttatc tgccctggag aactataact tcgaacttgt
     3121 ggatggcgtg aagttgaaaa aagacaaact gaatccacag agtacttact cggaggcatg
     3181 aaggcagaca gaggtgacca ggcaagcagg agagtggagc ggaggacaga gcttgagctg
     3241 gggaccggct gatctttcac tgttcgggct gggaagtgcg ttaatgatgc caagccaggt
     3301 tttctcagga gcttcgatga gttcggccga cagacacgaa cgacttagct gtgttaacaa
     3361 tcggaatcct gtacagtcag cttccttctg ttggtttctt ttgaataatc aaatgctggt
     3421 gttgagacca agtatgattg acttaataat tcatttggac tcccctttcc cttctctctc
     3481 tccctcttct ggattctttt cggaaactgc aaaatccaag atgctggcac caagtgtatt
     3541 cagtggggcc cttttgacgg acatgctacc tgcagcccag tgcccagaat atattcgagt
     3601 aaccacattt cagtggactc ctgaagctgg ccttgtgtat catcgcccgc gttgtgcata
     3661 ggcaaagaag gagtaggatg ttttcagtta aagtaccgta gcctcagtac cagtctagcg
     3721 tgtcagctct gtttacgaag caataccgtc agatttcctc gatgttttcc agtgttgtac
     3781 tcaaccttgt gctgtgaact ccatacagaa aactgtgcca tcaccaaaca ctgctggcaa
     3841 ctgggtgtga tgccaacaac cacaacgaag aatccttggc actggctggt ctacgtcctc
     3901 tcaagtgcct ttttgtttgt actggttctc attgtgttac attaacccgc cctgtttctc
     3961 gctggtgaaa gccctcctct tgaatcagac cctggtggcc cactgactaa gaagaaagta
     4021 tattttagtg tgagatatca gcctccgggt aggcaagggc tccgaagatt tggcaacgtg
     4081 gcttaattgt tctgcttttt ccgtagttca atttcatgtc tcttgaccct tttgtataaa
     4141 gctgcaatat tctcttactg ttctttcata tggaatgtat tttcaaatgt aaactctttc
     4201 tctcctatct ctctgtcttt ttcctctctt aggatttaag catttgccat tatccagaaa
     4261 agaaacttgc agctttaacc tgctggtaat ggcgaacaat tttactagac tttatgttgg
     4321 aaaataaata aataagggaa attcctaact ttgccctcca aagtctaact ttggtttcct
     4381 tgttaactgg ttaaagtgac agtatctttt ttcctaagcc atttgtctgt ctattccaat
     4441 caaaatgatc ttcaatagaa atgtttgcat ttaataaaaa tagtgataag ttgagagaag
     4501 aaataatact aattggcttt caagtgagac ccaaaggaat agagttctcc ccatatccaa
     4561 aaacaggaga tttttacatc caaatacaca aaaatgaccc gtgagagcct tcttgttttg
     4621 gtattgagtc agataaggga agtggaagaa agaacagtta atttaagaaa acgacaataa
     4681 atcatggtgc ctggggatga agtattttaa gatgacagag gggaagaaaa tgagtaaagt
     4741 caaaacaaat gtttttaaaa attcagtctg cagcaaccct gaaataacag agacttgaat
     4801 gaatgcttct agaaacttcc agtgcctcac aaacaaaaag cctgccttgg ggctgttaag
     4861 acctaagcct ccaatggcac agagaagtaa atatcttatc aggcagcatt gaattaactc
     4921 aaagaagctt tggttgtttt ccgtgtattt gtgccatgcg gcgttgtagg taagaacttc
     4981 ctcccttccg gcactgctgt aggtctcact cgaatatatt tgtgggagtc acattgcatc
     5041 atggagggga aagtccattc atcctggtct aattgaattg agaatgcctt ttgtttccag
     5101 gaaagtattg atcactatga aagaagaata gattcttatc cccagaggca tccattcagc
     5161 cgttataatc gtaccaggat gaaagcatta agacttgatt tacctttaag gcaacagact
     5221 tacagttgtc ttcagccaag gaaaaatgat actgcaactt taaatttgaa agtatcttgc
     5281 actgataaat atatttaaaa attatatgtt tataaagtta ttaatttgta aaggcagtgt
     5341 tacaaaatgt tcagtttata ttgttttaga ttgtttcgta attttaaaag gtgtaaaata
     5401 acatattttt ttctttattg agatctataa aactttctgt agtaaaatgt tttcatttta
     5461 ctggtatatt attgcttcat gttttgtacc atcataaaat tttgtgcaaa ttttttttac
     5521 agaaattttt attttctatg acaatatgac acttgtaaat tgttgattca aaatgaacag
     5581 cgaagcctta actttaaatg acatttgtat tctcagacac tgagttgcat aaaaaaccac
     5641 acagaactga actgtaactt aaattccaaa ctatgactac tacattccaa agaaacagtt
     5701 gaattaaaca ttttcctaaa ata
//
LOCUS       XM_032618660            9676 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus spectrin beta, erythrocytic (SPTB), mRNA.
ACCESSION   XM_032618660
VERSION     XM_032618660.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 6 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-204               VOSU01000015.1     141409827-141410030 c
            205-403             VOSU01000015.1     141353272-141353470 c
            404-555             VOSU01000015.1     141335543-141335694 c
            556-729             VOSU01000015.1     141334096-141334269 c
            730-821             VOSU01000015.1     141333015-141333106 c
            822-902             VOSU01000015.1     141332536-141332616 c
            903-1018            VOSU01000015.1     141332123-141332238 c
            1019-1131           VOSU01000015.1     141331638-141331750 c
            1132-1319           VOSU01000015.1     141330626-141330813 c
            1320-1437           VOSU01000015.1     141328714-141328831 c
            1438-1596           VOSU01000015.1     141327459-141327617 c
            1597-1899           VOSU01000015.1     141326239-141326541 c
            1900-2050           VOSU01000015.1     141325156-141325306 c
            2051-2918           VOSU01000015.1     141323677-141324544 c
            2919-3056           VOSU01000015.1     141322480-141322617 c
            3057-3231           VOSU01000015.1     141317685-141317859 c
            3232-3273           VOSU01000015.1     141317642-141317683 c
            3274-3306           VOSU01000015.1     141317608-141317640 c
            3307-3438           VOSU01000015.1     141317475-141317606 c
            3439-3459           VOSU01000015.1     141317453-141317473 c
            3460-3726           VOSU01000015.1     141317185-141317451 c
            3727-3813           VOSU01000015.1     141317097-141317183 c
            3814-4016           VOSU01000015.1     141316433-141316635 c
            4017-4107           VOSU01000015.1     141316252-141316342 c
            4108-4254           VOSU01000015.1     141314406-141314552 c
            4255-4518           VOSU01000015.1     141312774-141313037 c
            4519-4725           VOSU01000015.1     141312202-141312408 c
            4726-4815           VOSU01000015.1     141311671-141311760 c
            4816-5094           VOSU01000015.1     141307836-141308114 c
            5095-5225           VOSU01000015.1     141307128-141307258 c
            5226-5430           VOSU01000015.1     141305973-141306177 c
            5431-5805           VOSU01000015.1     141305348-141305722 c
            5806-6050           VOSU01000015.1     141303703-141303947 c
            6051-6189           VOSU01000015.1     141302460-141302598 c
            6190-6274           VOSU01000015.1     141301909-141301993 c
            6275-6471           VOSU01000015.1     141300949-141301145 c
            6472-6521           VOSU01000015.1     141300589-141300638 c
            6522-6600           VOSU01000015.1     141300005-141300083 c
            6601-6863           VOSU01000015.1     141290258-141290520 c
            6864-7037           VOSU01000015.1     141288049-141288222 c
            7038-7080           VOSU01000015.1     141287790-141287832 c
            7081-9676           VOSU01000015.1     141285050-141287645 c
FEATURES             Location/Qualifiers
     source          1..9676
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9676
                     /gene="SPTB"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 6 bases in 6 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 long SRA read, 13 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746891"
     CDS             256..7248
                     /gene="SPTB"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 6 bases in 6 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: spectrin beta chain,
                     erythrocytic"
                     /protein_id="XP_032474551.1"
                     /db_xref="GeneID:116746891"
                     /translation="MTSATEVENVGNQPPYSRINARWDAPDDELDNDNSSARLFERSR
                     IKALADEREVVQKKTFTKWVNSHLARVSCRITDLYKDLRDGRMLIRLLEVLSGEMLPK
                     PTKGKMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQ
                     DIVVQTQEGRETRSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRPD
                     LIDFDKLKDSNARHNLEHAFDVAERQLGIIPLLDPEDVFTENPDEKSIITYVVAFYHY
                     FSKMKVLAVEGKRVGKVIDHAIETEKMIEKYSGLASDLLTWIEQTITVLNSRKFANSL
                     TGVQQQLQAFSTYRTVEKPPKFQEKGNLEVLLFTIQSRMRANNQKVYTPHDGKLVSDI
                     NRAWESLEEAEYRRELALREELIRQEKLEQLARRFDRKAAMRETWLNENQRLVAQDNF
                     GYDLAAVEAAKKKHEAIETDTAAYEERVRALEDLAQELERENYHDQKRITARKDNVLR
                     LWNYLQELLQSRRQRLEKTLALQKLFQDMLHSIDWMDEIKAHLLSAEFGKHLLEVEDL
                     LQKHKLMEADIAIQGDKVKAITTATLQFAEEPGYQPCDPQVIQDRVSHLEQCFEELSN
                     TAAGRKAQLEQSKRLWKFFWEMDETESWIKEKEQIYSSLDYGKDLTSVLILQRKHKAF
                     EDELRGLDAHLDQTFQEAEGMVARKEFGHPQIEAQIKEVSAQWNQLKELAAFRKKNLQ
                     DAENFFQFQGDADDLKAWLQDAHRLLSGDVGQDEGATQALGKKHKDFLEELEENRVVL
                     EHLEKQAKGFPQEFRDSPDVTNRLQALRDLHVQVVAQADMRRQRLQDALDLYTVFGET
                     DACELWMGEKGKWLAQMDIPDTLEDLEVVQHRFDILDQEMKTLMAQIDGVNLAANSLL
                     ESSHPRSGEVKKCQDHLNTRWQEFQTMVLERREAVDSALRVHSYCVDCEETSKWVMDK
                     TKVVESTKDLGRDLTGVIAIQRKLSGLERDVAAIMTRVGALRQESQQLMESHPELKKD
                     IGQRQAYVEELWQALQEALKSQEASLGEASPLQAFLQELDAFQAWLSTAQKDVASKDM
                     PESLPEAEQLLQQHAAIKDDIDRHQNSYQQVKASGEKVIHGQTDPEYLLLGQRLDGLD
                     KGWDALHRMWESRSHALCPVPRFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEA
                     RIRKFEEFLVSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNDEKA
                     QEASVLLRDNLELQNFLQNCKELTLWINDKLLTSQDVSYDEARNLHNKWLKHQAFVAE
                     LASHQGWLENIDAEGKQLMEEKPQFAALVSQRLEALHRLWDELQATTQETTQHLSAAR
                     SSDLRSQTQADLNKWIRAMEDQLRSDDLGKDLTSVNRMLAKLKRVEDQVNVRKVELEE
                     LFAQMPSLGEEAGHEDLSIEKRFLDLLEPLGRRKKQLESSRARLQISRDLEDETLWVE
                     ERLPLAQSTDHGTNLQTVQLFMKKNQTLQNEILGHAPRVEDVLHRGQQLVAAAEIDCR
                     DVEECLGHLQVSWDTLRETAARRLQRLRDASEAQQYYLDAGEAEAWISEQEFYVFSDE
                     TPQDEEGAIVMLKRHLRQQRTVEEYGRSIKQLAGRAQSLLSSGHPEGEQIIRLQGQVD
                     KQYAGLKDMAEERRRKLENMYHLFQLKREVEDLEQWITEKELVASSPEMGQDFDHVTL
                     LRDKFRDFARETGATGQERVDNVNAIIERLIDVGHAEAATIAEWKDGLNEMWADLLEL
                     IDTRMQLLAASYDLQRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFER
                     ELHLLGVQVQQFQDVATRLQTAYAGEKADTIQNKEQEVSAAWQALLDACAGRRTQLVD
                     TADKFRFFSMVRDLLSWMDSIIRQIETQEKPRDVSSVELLMKYHKGILAEMETRSKNF
                     SACLELGESLLQRQHQASDEIREKLQQVVSRRKEMKEKWKARQEQLHMWLEVCQFSRD
                     ASVAEAWLIAQEPYLASRDFGHTVDSVEKLIKRHEAFEKSTAGWAERFAALEKPTTLE
                     LKEHQTLERTDEETGPQEEEGETAGEAPRGPHRAATERTSPGEEERQWPQDLQPPLPP
                     GPHKEGQEEKSSTDEKPTTEPLFKVLDTPLSEGEEPTTLPAQVDHGHSVQMEGYLGRK
                     HDLEGPNKKASNRSWNNLYCVLRNSELTFYKDAKNLALGVPYHGEEPLALRHAICEIA
                     ASYKKKKHVFKLRLSNGSEWLFHGKDEEEMLSWLQGVSTAINESQSIRVKAQSLPLPS
                     ITGPDASLGKKDKEKRFSFFPKKK"
     misc_feature    328..723
                     /gene="SPTB"
                     /note="first calponin homology (CH) domain found in
                     spectrin beta chain, non-erythrocytic 2 (SPTBN2) and
                     similar proteins; Region: CH_SPTBN2_rpt1; cd21317"
                     /db_xref="CDD:409166"
     misc_feature    order(364..369,376..378,385..390,397..402,409..414,
                     421..423,583..585,592..597,604..606,625..627,640..666,
                     685..690,694..699,706..711,718..723)
                     /gene="SPTB"
                     /note="actin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409166"
     misc_feature    763..1098
                     /gene="SPTB"
                     /note="second calponin homology (CH) domain found in
                     spectrin beta chain, erythrocytic (SPTB) and similar
                     proteins; Region: CH_SPTB_rpt2; cd21319"
                     /db_xref="CDD:409168"
     misc_feature    order(778..780,790..792,940..942,946..951,958..960,
                     979..981,994..1020,1045..1050,1054..1059,1066..1071,
                     1078..1080)
                     /gene="SPTB"
                     /note="putative actin binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:409168"
     misc_feature    1159..1491
                     /gene="SPTB"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    1519..1830
                     /gene="SPTB"
                     /note="Spectrin repeat; Region: Spectrin; pfam00435"
                     /db_xref="CDD:395348"
     misc_feature    1843..2481
                     /gene="SPTB"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2161..2178
                     /gene="SPTB"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2176..2796
                     /gene="SPTB"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2479..2496
                     /gene="SPTB"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2488..3114
                     /gene="SPTB"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2791..2808
                     /gene="SPTB"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    3115..3744
                     /gene="SPTB"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    3430..3447
                     /gene="SPTB"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    3757..4389
                     /gene="SPTB"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4069..4086
                     /gene="SPTB"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    4408..4677
                     /gene="SPTB"
                     /note="Spectrin repeats; Region: SPEC; smart00150"
                     /db_xref="CDD:197544"
     misc_feature    4705..5322
                     /gene="SPTB"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    4999..5016
                     /gene="SPTB"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5323..5955
                     /gene="SPTB"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    5638..5655
                     /gene="SPTB"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    5962..>6462
                     /gene="SPTB"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    6274..6291
                     /gene="SPTB"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    6802..7119
                     /gene="SPTB"
                     /note="Beta-spectrin pleckstrin homology (PH) domain;
                     Region: PH_beta_spectrin; cd10571"
                     /db_xref="CDD:269975"
     misc_feature    order(6823..6825,6862..6870,7006..7008)
                     /gene="SPTB"
                     /note="non-cannonical phosphoinositide binding site
                     [chemical binding]; other site"
                     /db_xref="CDD:269975"
ORIGIN      
        1 ctggtcccgg cagcagcgat gtcccccggc aggaatgtcc ctcctcagat aatgttattt
       61 atatctctgg gcgggtccgc ggctcggcag caccaggcgc ccggcggccg ctgtgccagg
      121 agccctgcgc tgccttcctc cccctgcgcc gccgccgctg ccacccccgg gctcggggtg
      181 gccgccacta cagccccagc gcagggaccc ttccatgaag actgaggcag gcgtagctgc
      241 tgagagcctg ctgacatgac atcggccacg gaggttgaaa acgtgggcaa ccagccaccg
      301 tacagccgga tcaatgcgcg ctgggatgcc ccggacgatg agctggataa tgacaacagc
      361 tcagccaggc tctttgagag gtcccggatc aaggccttgg cagatgagcg ggaagtcgtt
      421 cagaagaaaa ccttcacaaa atgggtgaac tcgcacctgg cgcgcgtgtc ctgccgcatc
      481 actgacctct acaaggacct gcgggatggg aggatgctca tcaggctgtt ggaagtgctc
      541 tctggagaga tgctgccaaa gcccacgaag gggaagatgc gcatccactg cctggagaat
      601 gtggacaagg ccctgcagtt cctgaaggag cagcgtgtgc acctggagaa catgggctcc
      661 cacgacatcg tggacggcaa ccaccgcctg gtcctgggcc tcatctggac catcatcctc
      721 cgcttccaga ttcaggacat cgttgtccaa actcaggaag gtcgtgagac acgctcagcc
      781 aaggacgcat tgctgttatg gtgtcagatg aagacggcag gctaccccca tgtcaatgtc
      841 accaacttca cctccagctg gaaggatggc ctagccttta acgccctgat ccacaagcac
      901 cggcccgacc tgattgattt tgataagctg aaggactcca acgcccggca caacctggag
      961 cacgcgttcg acgtggctga gcgacagctg ggcatcatcc cgctcctcga ccctgaagat
     1021 gtcttcacag aaaaccctga cgagaaatcc atcatcacct acgtggtggc gttttaccac
     1081 tacttctcca agatgaaggt gctggcagtg gagggcaagc gcgttggcaa ggtaattgac
     1141 cacgccattg agaccgagaa gatgattgaa aagtacagcg ggctggcctc agacctgctc
     1201 acctggatcg agcagaccat cactgtcctg aacagccgca agttcgccaa ctccctgacc
     1261 ggtgtccagc agcagctgca ggccttcagt acctaccgca ccgtggagaa gccgcccaag
     1321 tttcaggaga aggggaatct agaagtccta ctttttacca tccagtcacg gatgagagcc
     1381 aacaatcaga aagtgtacac gccccatgat gggaaactcg tgtccgacat caaccgggcc
     1441 tgggaaagcc tggaggaagc tgagtaccgg cgggagctgg ctctgaggga ggagctcatc
     1501 cggcaggaga agctagagca gttggcccgg cgctttgacc gaaaggctgc catgagagag
     1561 acgtggctca atgaaaacca gcggcttgtg gcccaggata atttcgggta cgacctggca
     1621 gctgtggagg ccgccaagaa gaagcatgag gccattgaga cagacacagc tgcctacgag
     1681 gagcgggtga gggccctgga ggacctggcc caggagctgg agcgggagaa ttaccacgac
     1741 cagaagcgca tcacggcccg caaggacaac gtcctgcgcc tgtggaacta cctgcaggag
     1801 ctgctgcagt cccggcgcca gaggcttgag aagacgctgg ccctgcagaa gctcttccag
     1861 gacatgctgc acagcatcga ctggatggac gagatcaagg ctcacctctt gtctgccgag
     1921 ttcgggaagc acttgttgga ggtcgaggac ttgctccaaa aacacaagtt gatggaggct
     1981 gacatcgcca tccaagggga caaagtgaag gcgatcacca cagccactct tcagttcgct
     2041 gaggagccag ggtaccagcc ttgcgacccc caggtcatcc aggaccgtgt cagccacctg
     2101 gagcagtgct tcgaggagct gagcaacacg gcagccggac gcaaggccca gctggagcag
     2161 tccaagcggc tctggaagtt cttctgggag atggatgaga ccgagagctg gatcaaagag
     2221 aaggagcaga tttactcctc cctggactat ggcaaggacc tgaccagtgt gctcatccta
     2281 cagcgcaagc acaaggcctt cgaggatgag ctgcgcgggc tggacgccca cctggaccag
     2341 accttccagg aggctgaggg catggttgca cgcaaggagt ttgggcaccc gcagatcgag
     2401 gcccagatca aggaggtgtc tgcccagtgg aaccagctga aggagctggc tgccttccgc
     2461 aagaagaacc tccaggacgc tgagaacttc tttcagttcc agggcgatgc ggacgatctg
     2521 aaggcctggc tgcaagacgc ccaccggctg ctctcgggag atgtggggca ggatgaaggg
     2581 gccacacagg ccctgggcaa gaagcacaag gactttctgg aggagctaga ggagaaccgc
     2641 gtggtgttgg agcatctgga aaagcaggcc aaggggttcc cccaagagtt tcgggattcc
     2701 ccagatgtga ccaaccggct gcaggccctc cgggatctcc acgtgcaggt ggtggcccaa
     2761 gcggacatgc gtcggcagag gctgcaggat gccctggacc tgtacacggt gtttggggag
     2821 acggatgcct gtgaactgtg gatgggcgag aaggggaagt ggctggccca gatggacatc
     2881 ccagacacgc tggaggacct ggaggtcgtg cagcacaggt ttgatatact ggaccaggag
     2941 atgaagactt tgatggctca gattgatggc gtgaaccttg ctgccaacag cctgttagag
     3001 agtagccacc cacgcagtgg ggaagtgaag aagtgccagg accatctgaa taccaggtgg
     3061 caggaattcc agaccatggt gttggaacgg cgggaggctg tggactcggc cctccgggtg
     3121 cacagctact gtgtggattg cgaggagacc agcaagtggg tgatggacaa gacaaaggtg
     3181 gtggagtcca caaaggacct gggccgggac ctgacaggcg tcatcgccat ccagcgcaag
     3241 ctgtcggggc tggagcgtga cgtggccgcc atcatgaccc gcgtgggtgc cctgcggcag
     3301 gagtcccagc agctgatgga gtcacaccct gagctgaaga aggacattgg ccagcggcag
     3361 gcgtatgtgg aggagctgtg gcaggccctg caggaagccc tgaagagcca ggaggcctcg
     3421 ctgggggaag ccagccctct gcaggccttc ctgcaggaac tggatgcctt ccaggcctgg
     3481 ctgtccacgg cccagaagga cgtggcctcc aaggacatgc ctgagtccct cccagaggcc
     3541 gagcagctcc tgcagcagca tgcggccatc aaggacgaca ttgacaggca ccagaatagc
     3601 taccagcagg tcaaggcatc cggagagaag gtgatccatg gccagacgga cccagagtac
     3661 ctgctcctgg gccagcggct ggatggcctg gataagggct gggatgccct gcaccgcatg
     3721 tgggagagcc gcagccatgc cctctgccca gtgcctcgct tccaggagtt ccagaaggac
     3781 gccaagcagg ctgaagccat cctcagcaac caggaatata ctctggctca cttggagccc
     3841 ccagactccc tagaagctgc agaggccagg atccggaagt ttgaggaatt cttggtgtct
     3901 atggagaaca accgggataa ggttttgagt cctgtggact ctggaaacaa gctggtagct
     3961 gaaggaaacc tctactcaga caagatcaag gagaaggtgc agctgattga ggacaggcac
     4021 aggaaaaatg acgagaaggc ccaggaggcc tcagtccttc tgagagacaa cctggagctc
     4081 cagaacttcc tgcagaactg caaggagctc actctctgga tcaatgacaa gctgctgaca
     4141 tcccaggatg tctcctatga tgaagctcga aaccttcaca acaaatggct gaagcaccag
     4201 gcgttcgtgg cagagctggc ttcccaccag gggtggctag agaacattga tgcagaagga
     4261 aagcagctga tggaggagaa gccccagttt gcggccctgg tgtcccagag gctggaagcc
     4321 ttgcaccggc tctgggatga gcttcaggcc accacacagg agacgaccca gcacctctca
     4381 gccgccagga gctctgacct gcgttcgcag acccaggccg acctcaacaa gtggatcagg
     4441 gccatggagg accagctgcg gtcggacgac ctgggcaagg acctgaccag cgtcaacagg
     4501 atgctggcta agctgaagcg tgtggaggac caagtgaacg tgcggaaggt ggaactggag
     4561 gagctgtttg cccagatgcc ctcgctggga gaggaggcgg ggcatgaaga cttgagcatc
     4621 gagaagcggt tcctggacct tctggagccc ttggggagga ggaagaagca gctggaatca
     4681 tccagagcca ggctgcagat cagccgggac ttagaggatg agacgctctg ggtggaggag
     4741 aggctgcctc tggcccagtc gaccgaccat ggcacgaacc tgcaaactgt gcagctgttc
     4801 atgaagaaga accagacgct gcagaacgag atcctgggcc acgcgccgcg ggtggaggat
     4861 gtgctgcaca gggggcagca gctggtggcc gcggccgaga tcgactgccg agacgtggag
     4921 gagtgcctgg ggcatctgca ggtctcgtgg gacacactgc gggagacggc ggccaggcgg
     4981 ctgcagcgcc tgcgggacgc cagcgaggcg cagcagtact acctggacgc gggcgaggcc
     5041 gaggcctgga tcagtgagca ggagttctac gtcttctccg acgagacccc ccaggatgaa
     5101 gagggcgcca tcgtgatgtt gaagcggcac ttacggcagc aacgcactgt agaggagtac
     5161 gggaggagca tcaagcagct ggccggccgg gcccagagcc tgctgtcttc aggccacccc
     5221 gagggggaac agatcatcag acttcagggg caggtggaca agcagtacgc ggggctgaag
     5281 gacatggcag aggagcgcag gcggaagctg gagaacatgt accacctgtt ccagctgaag
     5341 cgggaggtgg aagacctgga gcagtggatc acggagaagg agctggtggc ctcctcccca
     5401 gaaatggggc aagactttga ccacgtgact ctgctccggg acaagttccg ggactttgcc
     5461 cgggagaccg gggcgactgg acaggagcgg gtggacaacg tgaatgccat catcgagcgg
     5521 ctcatcgacg tgggccacgc agaggcggcc accatcgccg agtggaagga cgggctgaac
     5581 gagatgtggg cggacctgct ggagctcatt gacacgcgca tgcagctgct ggccgcctcc
     5641 tatgacctgc agcgctactt ctacactggc gccgagatcc tgggcctcat tgacgagaag
     5701 caccgcgagc tgcctgagga tgtggggctg gacgccagca ccgccgagtc cttccatcgc
     5761 gtgcacacag ccttcgagcg ggagctccac ctgctgggtg tgcaggtaca gcagttccag
     5821 gacgtggcca cccgcctgca gacagcgtac gctggagaga aggcagacac catccagaac
     5881 aaggaacagg aggtgtctgc tgcatggcag gcgctgctcg atgcctgcgc ggggcgccgc
     5941 acccagctgg tggacacagc ggacaaattc cgcttcttca gcatggtccg agacctcctc
     6001 tcctggatgg acagcatcat ccggcagatc gagacccagg agaagcccag ggacgtctcc
     6061 tcggtggaac tgctcatgaa gtatcacaag ggcattctgg cggagatgga aacccgaagc
     6121 aagaacttca gcgcctgcct ggagctcggc gagtccctgc tgcagcggca acaccaagcc
     6181 tcggatgaga tcagggagaa actgcagcag gtggtgtcca ggaggaagga gatgaaggag
     6241 aagtggaagg cccgccagga gcagctccac atgtggttgg aagtgtgcca gttctctcgg
     6301 gacgcctcag tggctgaagc atggctgatc gcccaggagc cctacctggc cagccgggac
     6361 tttggacaca cggtggacag cgtggaaaag ctcatcaaga ggcatgaggc ttttgagaaa
     6421 tccacggcag gctgggcaga gcgcttcgcc gccctggaga agcccaccac gcttgagctc
     6481 aaagaacacc agaccctgga gagaactgac gaggagactg ggcctcaaga agaggaaggc
     6541 gagacagcag gggaggctcc ccgaggtccc caccgagcag ccaccgagag aacgtccccg
     6601 ggggaagaag agaggcagtg gccccaggac ctgcagccgc cactgccacc agggccgcac
     6661 aaggaagggc aggaggagaa atccagcaca gatgagaagc ccaccacaga gcccctcttt
     6721 aaggtcctgg acacgcctct gagcgagggt gaagagccta caacgctgcc ggcccaggtg
     6781 gaccacgggc acagcgtgca gatggagggc tacttgggcc gcaagcatga cctggagggg
     6841 cccaacaaga aggcgtccaa caggtcctgg aacaacctgt actgtgtgct caggaatagc
     6901 gagctgactt tctacaagga tgccaagaac ctggccctgg gggtgcccta ccatggggag
     6961 gagcccctgg ccctgagaca tgccatctgt gagattgctg ccagctacaa gaagaagaag
     7021 cacgtcttca agctgaggct gagcaatggc agtgagtggc ttttccacgg caaggatgag
     7081 gaggagatgc tgtcctggct gcagggcgtg agcaccgcca tcaacgagtc ccagagcatc
     7141 cgtgtcaagg cacagagcct gcccctaccc tccatcaccg gccccgacgc cagcctcggc
     7201 aagaaagaca aggagaagag attcagcttc ttccccaaaa agaagtagcc tctcgggcac
     7261 cccgcgggtg aagccagtgc gtcgggccta gcgacgagcg gggacgagtg cttccctcct
     7321 cagccgggtc ttccggctgc ccacggcctg gccgccgctg cctgccgcct gcctgccccg
     7381 agtcgccggc cgggccccag gccccgggcc ccgctgcact gcaatagctg ccttcgcgcc
     7441 accacccggc ccggcccggc ccacgcctgc ctccgcgccc tctgcccgca gccccggcgc
     7501 cccgcacacg gcgagcgcgg gctccaggga cggagctccc agctccgccg gccctcgggg
     7561 cctccggagc tggggtcagg agacggtttt cgaggcccac gccctcctct ccccgccccc
     7621 ctcccgggct gaggggcgcc agcctgtccc aacccccctc aaacataagc tggagaagaa
     7681 ggctgatggg gttcctcaga cgctgcccac tcccaaagca agtcttgctt ggggtcacct
     7741 cctgctaagt cgcagccaga gaaagggaaa gggaaaggga agaggacacc ggaaatgccc
     7801 gacctgcccc ttaggggcgt gaggaaggag gcttcaggta gctctgggcc aggggctact
     7861 ggggactgac gggacacgac agcctcctcc ccgctgggct tcctcagaac ggggactctc
     7921 acctcagggg ccaccgcatc ccctcctcgc tcctcctccc accgaaagtg gggggcaccc
     7981 tgcaagatcg atgggtccta agtgcaaagg ggctcccgcg gcctccagca gcccttgctg
     8041 ccacccccga tggtggcagg gaggaccagg aagctctcaa gccagccctc ttttaaaact
     8101 acagttgcag tttagggctc agcccagaag gaggtagata ggtctccaca ctgcctaagg
     8161 cgctgcctct ccaccctggg gtcctcctgc actcccagca gctgccaaac cagcaacatc
     8221 ccactcggac gcagggccct taagggagac agcacaggtc cccaggtaca ggatagacac
     8281 ggcaatgcct ggagtagagt atcccaaagc caaatatccc atgtgttctg tctgcagctg
     8341 gtaccacctg agggtgctgg ctggaccgac agcaaatttc atgacccgtc accctggggc
     8401 ggcaaatgtg gccacacctg tgtatttatt acgacccacg taacaacccc agacggctgg
     8461 acaaatgccg gggccaaagc cattaaggtg tggcgggcac ccttgcttag ctcctctgga
     8521 aggtcccggc cttaagtcag ggggccacat gggtatctac cccacaatcc caagcacagc
     8581 caaaaggggc cctgcaacct ctatccccag ggatagcttt ccctgtgctg ctgaggtcag
     8641 acttccagac ggaagagacc actagttcca cagggatttt tctccgccac actctgaaag
     8701 caatacagct ccagcccagc atcttaactg gggttaggtc caaaagaggg gttaagttgc
     8761 aggcagcagg catttcccct gggtagacca gaaaggtccc tggggccagc agttactgtt
     8821 tccatcacct tccccatggg aaggagcctt agacacactg agatgatccc ccggaagcgg
     8881 gtgaacctca ggcagaaatc acaggcatag gcatccagag tcactaggcc ttcccaggag
     8941 cccttagtgc tcgagatcaa taccaccatg tcaagggaag gcgatgtcag cagacgagaa
     9001 ccacaggagg gacgttctct gctggagcct gacaggtggt cccacttctg gagccagggt
     9061 cttcatttgg cctctatgca cctaacccta tggctctctg tgcatccaca ggggacctaa
     9121 tctataccac ccaccagcct cctttgatac ctagggaaac caaggcagga ggcagtgagg
     9181 tgatgacact cacctggcaa taaagaaggc ctctggtgca tctgagggca tgtcctgctc
     9241 cagggcagat agtggcaaga gtctccctca actgttccca tgggccagtc ttcagggcgc
     9301 caagagacta ggggccaccc tctcccctcc acgtgtgcca aagcagcacc tgaagtgaag
     9361 aatttcagca agcaactcca cagtcccaag aaagaaaggg cctccaggaa aagctaggat
     9421 ttcaccgccc ctgggccccc agactgggca agggcagcag ccggctgcac gtgacccacc
     9481 atctactgcc agctccccac gcatccctcc cccacgccac acaggccccg agacatgcaa
     9541 ctcaccggac tgagactgca ggggcccagc tctgggactc tgtgccacgt ggggggctaa
     9601 gctcctggtg ccctggcaag gtttcttttt tccctcctta cgttttctat tttgtagttc
     9661 tttttttttg cggtac
//
LOCUS       XM_032618669            4709 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X1, mRNA.
ACCESSION   XM_032618669
VERSION     XM_032618669.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4709
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4709
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             40..4080
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X1"
                     /protein_id="XP_032474560.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPCSSLMLIESTRESPCFTVTHYKHSKQQYNIQAKTVEEKRSWTHHIKRLILE
                     NHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKKASQDEAFTHVHQGRRQSEPGQLLY
                     NRATLPSRQRGFTVPGLKGHRKSEPSRHLLRQHSKKARAAGMKHAGSVGMLLDFEQPP
                     CARGLQSEAEGAAREEEEEEQAFQVSLKDLAGHEGCEQGAGPEPPGEEEEEEEESLAV
                     AEQVADFASSLLAALHCWHYRANALLFSRGAMGKGRREPEDPKSCRRPSSRSPTTAEK
                     CLSFESVSSLPEVEPDPESGTEQEVSAAMEGPRTEEMPSDTEAPEVLEMQLDTHQLLL
                     GLDPPGDMVDFIVADSTEDPKVLSSEDEEEEMGAAHEPESLLPPSVLDQASVIAERFV
                     SSFSRRSSLALEDGKSSGFGTPRLTSRSSSVVSLEDSEKGLARRGSTTDTLGSQLPPE
                     ADISMGVAAESDPSVNGTETQSPGCPAEPDRPSCTKESKLSSRDRLLLDKIKSYYESA
                     EHHDAGFSVRRRESLSFIPKGLVRNSVSRINSLPRPDPEPVAPLGHKRQVGSRAASWA
                     LFDYPGPGQACAGDPAPITDAEFRPSSEIVKIWEEVESTEGSPAKGPGQGQANSFDLH
                     EPLFILEDRELGAITEESAAASPERASPTEPPSPAHLARELKELVKELSSGTQGELVT
                     PLHPRILQLSHVMDSHVSERVKSKVYQLARQYSLRIKSKSVTARPPQPWEKVALTTPH
                     LQPEAGAPSAGRGKRKPVLSLFNHEQPTAQEHSPPKSGSAREVSPRRFSFSPSATSPR
                     TTSPGAWHIPRSPLSPLDTETFNWPDVRELCSKYASQDEALQAKGSRPHNLPVNRSHS
                     LPENMMQPQPPLSGKVGRCCSLNARRAPAGPGVVQPQPLAGSPPGAPGGGEALYVTAD
                     LTLEDSRRMVIMEKGPLSGPNAGLEAASGRGPSSPAAQAGQGPEFQECAEYRPKEEGP
                     RDLADPSQQGRVRSLREKFQALNSMG"
     misc_feature    319..840
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    787..1218
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <3037..4020
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 aacctccctg gagcgccccc accaggcagc aatgcaagga tgcccgtctc tgcctcgctc
       61 caccaagatg gcagccagga gcggcccgtg agcctgacct ccaccacctc ctcgtcaggc
      121 tcctcccgtg acagccgcgg ggccatggag gagcccagcg gctccgaggc ttcggccgag
      181 aacggggccg gctccccgcg cggccggcgt ctccccaaca acaactccag cagctggctg
      241 agcgtgaggg gctccctgtc ccctttcaac agccgggcgt cggtggcgcc tgcgcacaag
      301 ctcagctacg tgggtcgagt agtgcgggaa atcgtggaaa cggagcgcac gtacgtgcag
      361 gacctgcgca gcatcgttga ggactacctc ttgaagatca ttgacacgcc tgggctgctg
      421 aacccggagc aagtcagtgc cctttttggg aacatagaaa gcatctatgc actgaacagc
      481 cagctactca gagacctgga cagctgcaat agtgacccgg tggctgtggc cagctgcttt
      541 gtggaaagga gccaagagtt tgatatctac acccagtatt gcaacaacta ccccaactca
      601 gtggctgccc tcaccgagtg catgcaggac aagcagcagg ccaagttctt tcgggaccgg
      661 caggagctgc tgcagcactc actgcccttg ggttcctacc tcctgaagcc agtccagcgc
      721 atcctcaagt accacctgct actccaggaa atcgccaaac attttgatga agaagaggac
      781 ggctttgagg tggtagagga tgccattgac accatgactt gcgtggcctg gtacatcaac
      841 gacatgaaga ggagacatga gcacgcagtc cggctccagg agattcagtc tctgctcatc
      901 aactggaagg ggccagacct gaccacctac ggggagctcg tcctggaggg cacgttccgc
      961 gtgcaccgtg tgcgcaacga gaagaccttt ttcctctttg acaaagcact gctcatcacc
     1021 aagaagcggg gagatcactt tgtctacaag ggtcacatcc cgtgctcctc cctgatgctg
     1081 attgagagca ccagagaatc cccgtgcttc accgtcacac actacaagca cagcaaacag
     1141 cagtacaaca tccaggccaa aactgtggag gagaaacgga gctggactca ccacatcaag
     1201 aggctcatcc tggagaacca ccataccacc atcccccaga aggccaaaga agccatcttg
     1261 gaaatggatt cctattatcc caatcggtac cgccacagcc cagagcgcct gaagaaggcc
     1321 tcccaggatg aggcgttcac ccatgtgcac caggggcgcc ggcagtctga gcctggtcag
     1381 ctcctgtaca accgggcaac actccccagc aggcagcgag gcttcacggt gccaggcctt
     1441 aagggccata gaaagtcgga gccatccaga catctgctca ggcaacacag caagaaagcc
     1501 agagcagcag gaatgaagca tgcgggcagt gttggcatgc tcctggactt tgaacagccc
     1561 ccctgtgctc ggggcctgca gtcggaggct gaaggggctg cccgggagga ggaggaggaa
     1621 gaacaggcct ttcaggtctc cctgaaggac ctggcagggc atgaaggctg cgagcagggg
     1681 gctgggccag agcccccagg cgaggaggag gaggaggagg aggagagcct ggcagtggcg
     1741 gagcaggtag ccgactttgc cagctccctg ctggccgccc tccactgctg gcactatcgg
     1801 gccaacgctt tacttttctc ccggggcgct atggggaagg ggcgcaggga gcccgaagac
     1861 cccaagagct gccgaaggcc cagcagccga tctccaacca ccgctgagaa gtgcctgagc
     1921 tttgagtctg tgtcttccct gccggaggtt gagccagacc ctgagtctgg gacagagcag
     1981 gaggtgtctg ctgccatgga aggtcccagg accgaggaga tgccctcaga cacagaggct
     2041 ccagaagtcc tagaaatgca gcttgacacc caccagctgc tgctgggact ggaccccccg
     2101 ggtgacatgg tggacttcat cgtggccgac agcaccgagg accctaaggt cctgagcagt
     2161 gaggacgagg aggaggagat gggggccgcc cacgagcccg agagcctcct gcctccctct
     2221 gtgctggacc aggccagcgt cattgccgag cggttcgtca gcagcttctc tcggcggagc
     2281 agcctggcgc tggaggacgg caagtccagc ggcttcggga ccccgaggct gaccagccgg
     2341 agcagcagtg tggtcagcct agaggacagt gagaagggcc tggcccgacg tgggagcacc
     2401 acagacaccc tgggctctca gctccctcca gaagcggaca tcagtatggg ggtggccgca
     2461 gagagcgacc cttctgtcaa cgggacagag acccagagcc caggctgccc agcggagcca
     2521 gacaggcctt cctgcacgaa ggaatcgaag ctttcttccc gagaccggct gttgttggac
     2581 aaaatcaaga gctactatga aagtgcagag caccacgatg caggcttcag tgtccggcgc
     2641 cgggagagcc tctccttcat ccccaaagga ttggtgagaa actcagtctc cagaatcaac
     2701 agccttccca ggccagaccc ggagccagtg gctccgctgg ggcataagag acaggtgggt
     2761 tcgcgggcag cctcgtgggc cctctttgac tacccaggac caggccaggc ttgtgctggg
     2821 gacccagctc ccatcacaga tgctgagttc cgcccgtctt cggaaattgt gaagatctgg
     2881 gaggaagtgg agtctactga gggcagccct gcgaagggac caggccaagg ccaggccaat
     2941 agctttgacc tgcacgagcc cctcttcatc ctggaggacc gtgagctggg ggccatcact
     3001 gaggagtcgg ctgctgcctc gccagagcgt gcctccccca ctgagccccc cagcccggcc
     3061 cacctggccc gggagctgaa ggagctggtg aaggagctga gcagcggcac ccagggggag
     3121 ctggtgaccc cgctacaccc ccgcatcctg cagctctccc acgtgatgga cagccacgtg
     3181 agcgagcgag tcaagagcaa ggtctaccag ctggctcgcc agtacagcct ccggatcaag
     3241 agcaagtcgg tgacggccag gccaccgcag ccgtgggaaa aggtggctct taccaccccc
     3301 cacctacagc cggaggctgg agcaccatct gctggcagag gtaagaggaa accagtgctg
     3361 tctctcttca accacgagca gcccacggcc caggaacaca gcccgcccaa gtccggctct
     3421 gccagggagg tatctccgcg gcgtttttcc ttcagcccct cggccaccag cccgaggacc
     3481 acctcgcctg gggcctggca catcccccga agccccctca gccccttgga caccgagact
     3541 ttcaactggc ccgacgtgcg agagctctgc tccaaatacg cctcccagga cgaggcgctc
     3601 caggccaagg gcagccggcc gcacaacctg cccgtcaacc ggagccactc gctgccagag
     3661 aacatgatgc agccgcagcc gcccctgtcg gggaaggtgg gccgctgctg cagcctgaac
     3721 gccaggaggg ctccggcagg cccaggggtc gtccagcctc agcctctggc ggggtcacct
     3781 ccaggcgcgc cgggtggagg ggaggccctg tacgtcaccg cagacctcac actggaggac
     3841 agccggcgga tggtcatcat ggagaagggg cccctgtccg gccccaacgc gggactggag
     3901 gcagccagcg ggcggggacc gagctcacca gcagcccagg cggggcaggg cccggagttc
     3961 caggagtgtg cagagtatcg gcctaaagaa gagggtccca gggacctggc agacccaagc
     4021 cagcagggca gagtgaggag cctgcgggag aaattccagg ccttgaactc catgggttga
     4081 cactgagtcc tgggggaggg agcagctgtg ccaagggacg gggaggaacg gtggcatcct
     4141 cgatcacagc ctgggttcac cgtgctcacc cggggccctc agaaaggctg cccctgggag
     4201 agcgccctgg ggcaccgggc aagggccttc acctgccgtg ggcgcgccag tgacttgcga
     4261 gcccctttgc cctccgaggc cagtgtggcc gcttcccttg tatgtagttc ttctctagta
     4321 agaggccaga tagttaagct catctcttcc cagggagagc gagccctgct caggcctcca
     4381 gtgttgcctg gccgctgcca gactgagggc ccacccaggg gacacacagg agtgtggcct
     4441 ggggaggctt tgttctttaa ctgtgccttt tcttaggatc tgggcaggaa cgaggcccat
     4501 aatttattgc tttctaccct gtggtatgtt ggtgtgctcg cgcgtgtgtg tgtgagtgtg
     4561 tgttctgttg ttgatttccc tcctgggaag aacgtcgtgg actctgttca ggtacttctg
     4621 tgggttgtcc tgctggcccc gtggttgtca ctaatgtaca cacattttgt tatttgccaa
     4681 tggtgtaata accactgctg accaaccaa
//
LOCUS       XM_032618673            4694 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X2, mRNA.
ACCESSION   XM_032618673
VERSION     XM_032618673.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4694
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4694
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             40..4065
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X2"
                     /protein_id="XP_032474564.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPMVLRGWGPRSAPRLVLDCPLPLPQCSSLMLIESTRESPCFTVTHYKHSKQQ
                     YNIQAKTVEEKRSWTHHIKRLILENHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKK
                     ASQDEAFTHVHQGRRQSEPGQLLYNRATLPSRQRGFTVPGLKGHRKSEPSRHLLRQHS
                     KKARAAGMKHAGSVGMLLDFEQPPCARGLQSEAEGAAREEEEEEQAFQVSLKDLAGHE
                     GCEQGAGPEPPGEEEEEEEESLAVAEQGKGRREPEDPKSCRRPSSRSPTTAEKCLSFE
                     SVSSLPEVEPDPESGTEQEVSAAMEGPRTEEMPSDTEAPEVLEMQLDTHQLLLGLDPP
                     GDMVDFIVADSTEDPKVLSSEDEEEEMGAAHEPESLLPPSVLDQASVIAERFVSSFSR
                     RSSLALEDGKSSGFGTPRLTSRSSSVVSLEDSEKGLARRGSTTDTLGSQLPPEADISM
                     GVAAESDPSVNGTETQSPGCPAEPDRPSCTKESKLSSRDRLLLDKIKSYYESAEHHDA
                     GFSVRRRESLSFIPKGLVRNSVSRINSLPRPDPEPVAPLGHKRQVGSRAASWALFDYP
                     GPGQACAGDPAPITDAEFRPSSEIVKIWEEVESTEGSPAKGPGQGQANSFDLHEPLFI
                     LEDRELGAITEESAAASPERASPTEPPSPAHLARELKELVKELSSGTQGELVTPLHPR
                     ILQLSHVMDSHVSERVKSKVYQLARQYSLRIKSKSVTARPPQPWEKVALTTPHLQPEA
                     GAPSAGRGKRKPVLSLFNHEQPTAQEHSPPKSGSAREVSPRRFSFSPSATSPRTTSPG
                     AWHIPRSPLSPLDTETFNWPDVRELCSKYASQDEALQAKGSRPHNLPVNRSHSLPENM
                     MQPQPPLSGKVGRCCSLNARRAPAGPGVVQPQPLAGSPPGAPGGGEALYVTADLTLED
                     SRRMVIMEKGPLSGPNAGLEAASGRGPSSPAAQAGQGPEFQECAEYRPKEEGPRDLAD
                     PSQQGRVRSLREKFQALNSMG"
     misc_feature    319..840
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    787..1290
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <3022..4005
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 aacctccctg gagcgccccc accaggcagc aatgcaagga tgcccgtctc tgcctcgctc
       61 caccaagatg gcagccagga gcggcccgtg agcctgacct ccaccacctc ctcgtcaggc
      121 tcctcccgtg acagccgcgg ggccatggag gagcccagcg gctccgaggc ttcggccgag
      181 aacggggccg gctccccgcg cggccggcgt ctccccaaca acaactccag cagctggctg
      241 agcgtgaggg gctccctgtc ccctttcaac agccgggcgt cggtggcgcc tgcgcacaag
      301 ctcagctacg tgggtcgagt agtgcgggaa atcgtggaaa cggagcgcac gtacgtgcag
      361 gacctgcgca gcatcgttga ggactacctc ttgaagatca ttgacacgcc tgggctgctg
      421 aacccggagc aagtcagtgc cctttttggg aacatagaaa gcatctatgc actgaacagc
      481 cagctactca gagacctgga cagctgcaat agtgacccgg tggctgtggc cagctgcttt
      541 gtggaaagga gccaagagtt tgatatctac acccagtatt gcaacaacta ccccaactca
      601 gtggctgccc tcaccgagtg catgcaggac aagcagcagg ccaagttctt tcgggaccgg
      661 caggagctgc tgcagcactc actgcccttg ggttcctacc tcctgaagcc agtccagcgc
      721 atcctcaagt accacctgct actccaggaa atcgccaaac attttgatga agaagaggac
      781 ggctttgagg tggtagagga tgccattgac accatgactt gcgtggcctg gtacatcaac
      841 gacatgaaga ggagacatga gcacgcagtc cggctccagg agattcagtc tctgctcatc
      901 aactggaagg ggccagacct gaccacctac ggggagctcg tcctggaggg cacgttccgc
      961 gtgcaccgtg tgcgcaacga gaagaccttt ttcctctttg acaaagcact gctcatcacc
     1021 aagaagcggg gagatcactt tgtctacaag ggtcacatcc cgatggtctt gaggggctgg
     1081 ggccccaggt cagctccccg cctcgtgctt gactgccctc tccctctgcc ccagtgctcc
     1141 tccctgatgc tgattgagag caccagagaa tccccgtgct tcaccgtcac acactacaag
     1201 cacagcaaac agcagtacaa catccaggcc aaaactgtgg aggagaaacg gagctggact
     1261 caccacatca agaggctcat cctggagaac caccatacca ccatccccca gaaggccaaa
     1321 gaagccatct tggaaatgga ttcctattat cccaatcggt accgccacag cccagagcgc
     1381 ctgaagaagg cctcccagga tgaggcgttc acccatgtgc accaggggcg ccggcagtct
     1441 gagcctggtc agctcctgta caaccgggca acactcccca gcaggcagcg aggcttcacg
     1501 gtgccaggcc ttaagggcca tagaaagtcg gagccatcca gacatctgct caggcaacac
     1561 agcaagaaag ccagagcagc aggaatgaag catgcgggca gtgttggcat gctcctggac
     1621 tttgaacagc ccccctgtgc tcggggcctg cagtcggagg ctgaaggggc tgcccgggag
     1681 gaggaggagg aagaacaggc ctttcaggtc tccctgaagg acctggcagg gcatgaaggc
     1741 tgcgagcagg gggctgggcc agagccccca ggcgaggagg aggaggagga ggaggagagc
     1801 ctggcagtgg cggagcaggg gaaggggcgc agggagcccg aagaccccaa gagctgccga
     1861 aggcccagca gccgatctcc aaccaccgct gagaagtgcc tgagctttga gtctgtgtct
     1921 tccctgccgg aggttgagcc agaccctgag tctgggacag agcaggaggt gtctgctgcc
     1981 atggaaggtc ccaggaccga ggagatgccc tcagacacag aggctccaga agtcctagaa
     2041 atgcagcttg acacccacca gctgctgctg ggactggacc ccccgggtga catggtggac
     2101 ttcatcgtgg ccgacagcac cgaggaccct aaggtcctga gcagtgagga cgaggaggag
     2161 gagatggggg ccgcccacga gcccgagagc ctcctgcctc cctctgtgct ggaccaggcc
     2221 agcgtcattg ccgagcggtt cgtcagcagc ttctctcggc ggagcagcct ggcgctggag
     2281 gacggcaagt ccagcggctt cgggaccccg aggctgacca gccggagcag cagtgtggtc
     2341 agcctagagg acagtgagaa gggcctggcc cgacgtggga gcaccacaga caccctgggc
     2401 tctcagctcc ctccagaagc ggacatcagt atgggggtgg ccgcagagag cgacccttct
     2461 gtcaacggga cagagaccca gagcccaggc tgcccagcgg agccagacag gccttcctgc
     2521 acgaaggaat cgaagctttc ttcccgagac cggctgttgt tggacaaaat caagagctac
     2581 tatgaaagtg cagagcacca cgatgcaggc ttcagtgtcc ggcgccggga gagcctctcc
     2641 ttcatcccca aaggattggt gagaaactca gtctccagaa tcaacagcct tcccaggcca
     2701 gacccggagc cagtggctcc gctggggcat aagagacagg tgggttcgcg ggcagcctcg
     2761 tgggccctct ttgactaccc aggaccaggc caggcttgtg ctggggaccc agctcccatc
     2821 acagatgctg agttccgccc gtcttcggaa attgtgaaga tctgggagga agtggagtct
     2881 actgagggca gccctgcgaa gggaccaggc caaggccagg ccaatagctt tgacctgcac
     2941 gagcccctct tcatcctgga ggaccgtgag ctgggggcca tcactgagga gtcggctgct
     3001 gcctcgccag agcgtgcctc ccccactgag ccccccagcc cggcccacct ggcccgggag
     3061 ctgaaggagc tggtgaagga gctgagcagc ggcacccagg gggagctggt gaccccgcta
     3121 cacccccgca tcctgcagct ctcccacgtg atggacagcc acgtgagcga gcgagtcaag
     3181 agcaaggtct accagctggc tcgccagtac agcctccgga tcaagagcaa gtcggtgacg
     3241 gccaggccac cgcagccgtg ggaaaaggtg gctcttacca ccccccacct acagccggag
     3301 gctggagcac catctgctgg cagaggtaag aggaaaccag tgctgtctct cttcaaccac
     3361 gagcagccca cggcccagga acacagcccg cccaagtccg gctctgccag ggaggtatct
     3421 ccgcggcgtt tttccttcag cccctcggcc accagcccga ggaccacctc gcctggggcc
     3481 tggcacatcc cccgaagccc cctcagcccc ttggacaccg agactttcaa ctggcccgac
     3541 gtgcgagagc tctgctccaa atacgcctcc caggacgagg cgctccaggc caagggcagc
     3601 cggccgcaca acctgcccgt caaccggagc cactcgctgc cagagaacat gatgcagccg
     3661 cagccgcccc tgtcggggaa ggtgggccgc tgctgcagcc tgaacgccag gagggctccg
     3721 gcaggcccag gggtcgtcca gcctcagcct ctggcggggt cacctccagg cgcgccgggt
     3781 ggaggggagg ccctgtacgt caccgcagac ctcacactgg aggacagccg gcggatggtc
     3841 atcatggaga aggggcccct gtccggcccc aacgcgggac tggaggcagc cagcgggcgg
     3901 ggaccgagct caccagcagc ccaggcgggg cagggcccgg agttccagga gtgtgcagag
     3961 tatcggccta aagaagaggg tcccagggac ctggcagacc caagccagca gggcagagtg
     4021 aggagcctgc gggagaaatt ccaggccttg aactccatgg gttgacactg agtcctgggg
     4081 gagggagcag ctgtgccaag ggacggggag gaacggtggc atcctcgatc acagcctggg
     4141 ttcaccgtgc tcacccgggg ccctcagaaa ggctgcccct gggagagcgc cctggggcac
     4201 cgggcaaggg ccttcacctg ccgtgggcgc gccagtgact tgcgagcccc tttgccctcc
     4261 gaggccagtg tggccgcttc ccttgtatgt agttcttctc tagtaagagg ccagatagtt
     4321 aagctcatct cttcccaggg agagcgagcc ctgctcaggc ctccagtgtt gcctggccgc
     4381 tgccagactg agggcccacc caggggacac acaggagtgt ggcctgggga ggctttgttc
     4441 tttaactgtg ccttttctta ggatctgggc aggaacgagg cccataattt attgctttct
     4501 accctgtggt atgttggtgt gctcgcgcgt gtgtgtgtga gtgtgtgttc tgttgttgat
     4561 ttccctcctg ggaagaacgt cgtggactct gttcaggtac ttctgtgggt tgtcctgctg
     4621 gccccgtggt tgtcactaat gtacacacat tttgttattt gccaatggtg taataaccac
     4681 tgctgaccaa ccaa
//
LOCUS       XM_032618674            4691 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X3, mRNA.
ACCESSION   XM_032618674
VERSION     XM_032618674.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4691
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4691
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             40..4062
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X3"
                     /protein_id="XP_032474565.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPMVLRGWGPRSAPRLVLDCPLPLPQCSSLMLIESTRESPCFTVTHYKHSKQQ
                     YNIQAKTVEEKRSWTHHIKRLILENHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKK
                     ASQDEAFTHVHQGRRQSEPSRHLLRQHSKKARAAGMKHAGSVGMLLDFEQPPCARGLQ
                     SEAEGAAREEEEEEQAFQVSLKDLAGHEGCEQGAGPEPPGEEEEEEEESLAVAEQVAD
                     FASSLLAALHCWHYRANALLFSRGAMGKGRREPEDPKSCRRPSSRSPTTAEKCLSFES
                     VSSLPEVEPDPESGTEQEVSAAMEGPRTEEMPSDTEAPEVLEMQLDTHQLLLGLDPPG
                     DMVDFIVADSTEDPKVLSSEDEEEEMGAAHEPESLLPPSVLDQASVIAERFVSSFSRR
                     SSLALEDGKSSGFGTPRLTSRSSSVVSLEDSEKGLARRGSTTDTLGSQLPPEADISMG
                     VAAESDPSVNGTETQSPGCPAEPDRPSCTKESKLSSRDRLLLDKIKSYYESAEHHDAG
                     FSVRRRESLSFIPKGLVRNSVSRINSLPRPDPEPVAPLGHKRQVGSRAASWALFDYPG
                     PGQACAGDPAPITDAEFRPSSEIVKIWEEVESTEGSPAKGPGQGQANSFDLHEPLFIL
                     EDRELGAITEESAAASPERASPTEPPSPAHLARELKELVKELSSGTQGELVTPLHPRI
                     LQLSHVMDSHVSERVKSKVYQLARQYSLRIKSKSVTARPPQPWEKVALTTPHLQPEAG
                     APSAGRGKRKPVLSLFNHEQPTAQEHSPPKSGSAREVSPRRFSFSPSATSPRTTSPGA
                     WHIPRSPLSPLDTETFNWPDVRELCSKYASQDEALQAKGSRPHNLPVNRSHSLPENMM
                     QPQPPLSGKVGRCCSLNARRAPAGPGVVQPQPLAGSPPGAPGGGEALYVTADLTLEDS
                     RRMVIMEKGPLSGPNAGLEAASGRGPSSPAAQAGQGPEFQECAEYRPKEEGPRDLADP
                     SQQGRVRSLREKFQALNSMG"
     misc_feature    319..840
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    787..1290
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <3019..4002
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 aacctccctg gagcgccccc accaggcagc aatgcaagga tgcccgtctc tgcctcgctc
       61 caccaagatg gcagccagga gcggcccgtg agcctgacct ccaccacctc ctcgtcaggc
      121 tcctcccgtg acagccgcgg ggccatggag gagcccagcg gctccgaggc ttcggccgag
      181 aacggggccg gctccccgcg cggccggcgt ctccccaaca acaactccag cagctggctg
      241 agcgtgaggg gctccctgtc ccctttcaac agccgggcgt cggtggcgcc tgcgcacaag
      301 ctcagctacg tgggtcgagt agtgcgggaa atcgtggaaa cggagcgcac gtacgtgcag
      361 gacctgcgca gcatcgttga ggactacctc ttgaagatca ttgacacgcc tgggctgctg
      421 aacccggagc aagtcagtgc cctttttggg aacatagaaa gcatctatgc actgaacagc
      481 cagctactca gagacctgga cagctgcaat agtgacccgg tggctgtggc cagctgcttt
      541 gtggaaagga gccaagagtt tgatatctac acccagtatt gcaacaacta ccccaactca
      601 gtggctgccc tcaccgagtg catgcaggac aagcagcagg ccaagttctt tcgggaccgg
      661 caggagctgc tgcagcactc actgcccttg ggttcctacc tcctgaagcc agtccagcgc
      721 atcctcaagt accacctgct actccaggaa atcgccaaac attttgatga agaagaggac
      781 ggctttgagg tggtagagga tgccattgac accatgactt gcgtggcctg gtacatcaac
      841 gacatgaaga ggagacatga gcacgcagtc cggctccagg agattcagtc tctgctcatc
      901 aactggaagg ggccagacct gaccacctac ggggagctcg tcctggaggg cacgttccgc
      961 gtgcaccgtg tgcgcaacga gaagaccttt ttcctctttg acaaagcact gctcatcacc
     1021 aagaagcggg gagatcactt tgtctacaag ggtcacatcc cgatggtctt gaggggctgg
     1081 ggccccaggt cagctccccg cctcgtgctt gactgccctc tccctctgcc ccagtgctcc
     1141 tccctgatgc tgattgagag caccagagaa tccccgtgct tcaccgtcac acactacaag
     1201 cacagcaaac agcagtacaa catccaggcc aaaactgtgg aggagaaacg gagctggact
     1261 caccacatca agaggctcat cctggagaac caccatacca ccatccccca gaaggccaaa
     1321 gaagccatct tggaaatgga ttcctattat cccaatcggt accgccacag cccagagcgc
     1381 ctgaagaagg cctcccagga tgaggcgttc acccatgtgc accaggggcg ccggcagtct
     1441 gagccatcca gacatctgct caggcaacac agcaagaaag ccagagcagc aggaatgaag
     1501 catgcgggca gtgttggcat gctcctggac tttgaacagc ccccctgtgc tcggggcctg
     1561 cagtcggagg ctgaaggggc tgcccgggag gaggaggagg aagaacaggc ctttcaggtc
     1621 tccctgaagg acctggcagg gcatgaaggc tgcgagcagg gggctgggcc agagccccca
     1681 ggcgaggagg aggaggagga ggaggagagc ctggcagtgg cggagcaggt agccgacttt
     1741 gccagctccc tgctggccgc cctccactgc tggcactatc gggccaacgc tttacttttc
     1801 tcccggggcg ctatggggaa ggggcgcagg gagcccgaag accccaagag ctgccgaagg
     1861 cccagcagcc gatctccaac caccgctgag aagtgcctga gctttgagtc tgtgtcttcc
     1921 ctgccggagg ttgagccaga ccctgagtct gggacagagc aggaggtgtc tgctgccatg
     1981 gaaggtccca ggaccgagga gatgccctca gacacagagg ctccagaagt cctagaaatg
     2041 cagcttgaca cccaccagct gctgctggga ctggaccccc cgggtgacat ggtggacttc
     2101 atcgtggccg acagcaccga ggaccctaag gtcctgagca gtgaggacga ggaggaggag
     2161 atgggggccg cccacgagcc cgagagcctc ctgcctccct ctgtgctgga ccaggccagc
     2221 gtcattgccg agcggttcgt cagcagcttc tctcggcgga gcagcctggc gctggaggac
     2281 ggcaagtcca gcggcttcgg gaccccgagg ctgaccagcc ggagcagcag tgtggtcagc
     2341 ctagaggaca gtgagaaggg cctggcccga cgtgggagca ccacagacac cctgggctct
     2401 cagctccctc cagaagcgga catcagtatg ggggtggccg cagagagcga cccttctgtc
     2461 aacgggacag agacccagag cccaggctgc ccagcggagc cagacaggcc ttcctgcacg
     2521 aaggaatcga agctttcttc ccgagaccgg ctgttgttgg acaaaatcaa gagctactat
     2581 gaaagtgcag agcaccacga tgcaggcttc agtgtccggc gccgggagag cctctccttc
     2641 atccccaaag gattggtgag aaactcagtc tccagaatca acagccttcc caggccagac
     2701 ccggagccag tggctccgct ggggcataag agacaggtgg gttcgcgggc agcctcgtgg
     2761 gccctctttg actacccagg accaggccag gcttgtgctg gggacccagc tcccatcaca
     2821 gatgctgagt tccgcccgtc ttcggaaatt gtgaagatct gggaggaagt ggagtctact
     2881 gagggcagcc ctgcgaaggg accaggccaa ggccaggcca atagctttga cctgcacgag
     2941 cccctcttca tcctggagga ccgtgagctg ggggccatca ctgaggagtc ggctgctgcc
     3001 tcgccagagc gtgcctcccc cactgagccc cccagcccgg cccacctggc ccgggagctg
     3061 aaggagctgg tgaaggagct gagcagcggc acccaggggg agctggtgac cccgctacac
     3121 ccccgcatcc tgcagctctc ccacgtgatg gacagccacg tgagcgagcg agtcaagagc
     3181 aaggtctacc agctggctcg ccagtacagc ctccggatca agagcaagtc ggtgacggcc
     3241 aggccaccgc agccgtggga aaaggtggct cttaccaccc cccacctaca gccggaggct
     3301 ggagcaccat ctgctggcag aggtaagagg aaaccagtgc tgtctctctt caaccacgag
     3361 cagcccacgg cccaggaaca cagcccgccc aagtccggct ctgccaggga ggtatctccg
     3421 cggcgttttt ccttcagccc ctcggccacc agcccgagga ccacctcgcc tggggcctgg
     3481 cacatccccc gaagccccct cagccccttg gacaccgaga ctttcaactg gcccgacgtg
     3541 cgagagctct gctccaaata cgcctcccag gacgaggcgc tccaggccaa gggcagccgg
     3601 ccgcacaacc tgcccgtcaa ccggagccac tcgctgccag agaacatgat gcagccgcag
     3661 ccgcccctgt cggggaaggt gggccgctgc tgcagcctga acgccaggag ggctccggca
     3721 ggcccagggg tcgtccagcc tcagcctctg gcggggtcac ctccaggcgc gccgggtgga
     3781 ggggaggccc tgtacgtcac cgcagacctc acactggagg acagccggcg gatggtcatc
     3841 atggagaagg ggcccctgtc cggccccaac gcgggactgg aggcagccag cgggcgggga
     3901 ccgagctcac cagcagccca ggcggggcag ggcccggagt tccaggagtg tgcagagtat
     3961 cggcctaaag aagagggtcc cagggacctg gcagacccaa gccagcaggg cagagtgagg
     4021 agcctgcggg agaaattcca ggccttgaac tccatgggtt gacactgagt cctgggggag
     4081 ggagcagctg tgccaaggga cggggaggaa cggtggcatc ctcgatcaca gcctgggttc
     4141 accgtgctca cccggggccc tcagaaaggc tgcccctggg agagcgccct ggggcaccgg
     4201 gcaagggcct tcacctgccg tgggcgcgcc agtgacttgc gagccccttt gccctccgag
     4261 gccagtgtgg ccgcttccct tgtatgtagt tcttctctag taagaggcca gatagttaag
     4321 ctcatctctt cccagggaga gcgagccctg ctcaggcctc cagtgttgcc tggccgctgc
     4381 cagactgagg gcccacccag gggacacaca ggagtgtggc ctggggaggc tttgttcttt
     4441 aactgtgcct tttcttagga tctgggcagg aacgaggccc ataatttatt gctttctacc
     4501 ctgtggtatg ttggtgtgct cgcgcgtgtg tgtgtgagtg tgtgttctgt tgttgatttc
     4561 cctcctggga agaacgtcgt ggactctgtt caggtacttc tgtgggttgt cctgctggcc
     4621 ccgtggttgt cactaatgta cacacatttt gttatttgcc aatggtgtaa taaccactgc
     4681 tgaccaacca a
//
LOCUS       XM_032618677            4622 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X4, mRNA.
ACCESSION   XM_032618677
VERSION     XM_032618677.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4622
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4622
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             40..3993
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X4"
                     /protein_id="XP_032474568.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPCSSLMLIESTRESPCFTVTHYKHSKQQYNIQAKTVEEKRSWTHHIKRLILE
                     NHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKKASQDEAFTHVHQGRRQSEPGQLLY
                     NRATLPSRQRGFTVPGLKGHRKSEPSRHLLRQHSKKARAAGMKHAGSVGMLLDFEQPP
                     CARGLQSEAEGAAREEEEEEQAFQVSLKDLAGHEGCEQGAGPEPPGEEEEEEEESLAV
                     AEQGKGRREPEDPKSCRRPSSRSPTTAEKCLSFESVSSLPEVEPDPESGTEQEVSAAM
                     EGPRTEEMPSDTEAPEVLEMQLDTHQLLLGLDPPGDMVDFIVADSTEDPKVLSSEDEE
                     EEMGAAHEPESLLPPSVLDQASVIAERFVSSFSRRSSLALEDGKSSGFGTPRLTSRSS
                     SVVSLEDSEKGLARRGSTTDTLGSQLPPEADISMGVAAESDPSVNGTETQSPGCPAEP
                     DRPSCTKESKLSSRDRLLLDKIKSYYESAEHHDAGFSVRRRESLSFIPKGLVRNSVSR
                     INSLPRPDPEPVAPLGHKRQVGSRAASWALFDYPGPGQACAGDPAPITDAEFRPSSEI
                     VKIWEEVESTEGSPAKGPGQGQANSFDLHEPLFILEDRELGAITEESAAASPERASPT
                     EPPSPAHLARELKELVKELSSGTQGELVTPLHPRILQLSHVMDSHVSERVKSKVYQLA
                     RQYSLRIKSKSVTARPPQPWEKVALTTPHLQPEAGAPSAGRGKRKPVLSLFNHEQPTA
                     QEHSPPKSGSAREVSPRRFSFSPSATSPRTTSPGAWHIPRSPLSPLDTETFNWPDVRE
                     LCSKYASQDEALQAKGSRPHNLPVNRSHSLPENMMQPQPPLSGKVGRCCSLNARRAPA
                     GPGVVQPQPLAGSPPGAPGGGEALYVTADLTLEDSRRMVIMEKGPLSGPNAGLEAASG
                     RGPSSPAAQAGQGPEFQECAEYRPKEEGPRDLADPSQQGRVRSLREKFQALNSMG"
     misc_feature    319..840
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    787..1218
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <2950..3933
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 aacctccctg gagcgccccc accaggcagc aatgcaagga tgcccgtctc tgcctcgctc
       61 caccaagatg gcagccagga gcggcccgtg agcctgacct ccaccacctc ctcgtcaggc
      121 tcctcccgtg acagccgcgg ggccatggag gagcccagcg gctccgaggc ttcggccgag
      181 aacggggccg gctccccgcg cggccggcgt ctccccaaca acaactccag cagctggctg
      241 agcgtgaggg gctccctgtc ccctttcaac agccgggcgt cggtggcgcc tgcgcacaag
      301 ctcagctacg tgggtcgagt agtgcgggaa atcgtggaaa cggagcgcac gtacgtgcag
      361 gacctgcgca gcatcgttga ggactacctc ttgaagatca ttgacacgcc tgggctgctg
      421 aacccggagc aagtcagtgc cctttttggg aacatagaaa gcatctatgc actgaacagc
      481 cagctactca gagacctgga cagctgcaat agtgacccgg tggctgtggc cagctgcttt
      541 gtggaaagga gccaagagtt tgatatctac acccagtatt gcaacaacta ccccaactca
      601 gtggctgccc tcaccgagtg catgcaggac aagcagcagg ccaagttctt tcgggaccgg
      661 caggagctgc tgcagcactc actgcccttg ggttcctacc tcctgaagcc agtccagcgc
      721 atcctcaagt accacctgct actccaggaa atcgccaaac attttgatga agaagaggac
      781 ggctttgagg tggtagagga tgccattgac accatgactt gcgtggcctg gtacatcaac
      841 gacatgaaga ggagacatga gcacgcagtc cggctccagg agattcagtc tctgctcatc
      901 aactggaagg ggccagacct gaccacctac ggggagctcg tcctggaggg cacgttccgc
      961 gtgcaccgtg tgcgcaacga gaagaccttt ttcctctttg acaaagcact gctcatcacc
     1021 aagaagcggg gagatcactt tgtctacaag ggtcacatcc cgtgctcctc cctgatgctg
     1081 attgagagca ccagagaatc cccgtgcttc accgtcacac actacaagca cagcaaacag
     1141 cagtacaaca tccaggccaa aactgtggag gagaaacgga gctggactca ccacatcaag
     1201 aggctcatcc tggagaacca ccataccacc atcccccaga aggccaaaga agccatcttg
     1261 gaaatggatt cctattatcc caatcggtac cgccacagcc cagagcgcct gaagaaggcc
     1321 tcccaggatg aggcgttcac ccatgtgcac caggggcgcc ggcagtctga gcctggtcag
     1381 ctcctgtaca accgggcaac actccccagc aggcagcgag gcttcacggt gccaggcctt
     1441 aagggccata gaaagtcgga gccatccaga catctgctca ggcaacacag caagaaagcc
     1501 agagcagcag gaatgaagca tgcgggcagt gttggcatgc tcctggactt tgaacagccc
     1561 ccctgtgctc ggggcctgca gtcggaggct gaaggggctg cccgggagga ggaggaggaa
     1621 gaacaggcct ttcaggtctc cctgaaggac ctggcagggc atgaaggctg cgagcagggg
     1681 gctgggccag agcccccagg cgaggaggag gaggaggagg aggagagcct ggcagtggcg
     1741 gagcagggga aggggcgcag ggagcccgaa gaccccaaga gctgccgaag gcccagcagc
     1801 cgatctccaa ccaccgctga gaagtgcctg agctttgagt ctgtgtcttc cctgccggag
     1861 gttgagccag accctgagtc tgggacagag caggaggtgt ctgctgccat ggaaggtccc
     1921 aggaccgagg agatgccctc agacacagag gctccagaag tcctagaaat gcagcttgac
     1981 acccaccagc tgctgctggg actggacccc ccgggtgaca tggtggactt catcgtggcc
     2041 gacagcaccg aggaccctaa ggtcctgagc agtgaggacg aggaggagga gatgggggcc
     2101 gcccacgagc ccgagagcct cctgcctccc tctgtgctgg accaggccag cgtcattgcc
     2161 gagcggttcg tcagcagctt ctctcggcgg agcagcctgg cgctggagga cggcaagtcc
     2221 agcggcttcg ggaccccgag gctgaccagc cggagcagca gtgtggtcag cctagaggac
     2281 agtgagaagg gcctggcccg acgtgggagc accacagaca ccctgggctc tcagctccct
     2341 ccagaagcgg acatcagtat gggggtggcc gcagagagcg acccttctgt caacgggaca
     2401 gagacccaga gcccaggctg cccagcggag ccagacaggc cttcctgcac gaaggaatcg
     2461 aagctttctt cccgagaccg gctgttgttg gacaaaatca agagctacta tgaaagtgca
     2521 gagcaccacg atgcaggctt cagtgtccgg cgccgggaga gcctctcctt catccccaaa
     2581 ggattggtga gaaactcagt ctccagaatc aacagccttc ccaggccaga cccggagcca
     2641 gtggctccgc tggggcataa gagacaggtg ggttcgcggg cagcctcgtg ggccctcttt
     2701 gactacccag gaccaggcca ggcttgtgct ggggacccag ctcccatcac agatgctgag
     2761 ttccgcccgt cttcggaaat tgtgaagatc tgggaggaag tggagtctac tgagggcagc
     2821 cctgcgaagg gaccaggcca aggccaggcc aatagctttg acctgcacga gcccctcttc
     2881 atcctggagg accgtgagct gggggccatc actgaggagt cggctgctgc ctcgccagag
     2941 cgtgcctccc ccactgagcc ccccagcccg gcccacctgg cccgggagct gaaggagctg
     3001 gtgaaggagc tgagcagcgg cacccagggg gagctggtga ccccgctaca cccccgcatc
     3061 ctgcagctct cccacgtgat ggacagccac gtgagcgagc gagtcaagag caaggtctac
     3121 cagctggctc gccagtacag cctccggatc aagagcaagt cggtgacggc caggccaccg
     3181 cagccgtggg aaaaggtggc tcttaccacc ccccacctac agccggaggc tggagcacca
     3241 tctgctggca gaggtaagag gaaaccagtg ctgtctctct tcaaccacga gcagcccacg
     3301 gcccaggaac acagcccgcc caagtccggc tctgccaggg aggtatctcc gcggcgtttt
     3361 tccttcagcc cctcggccac cagcccgagg accacctcgc ctggggcctg gcacatcccc
     3421 cgaagccccc tcagcccctt ggacaccgag actttcaact ggcccgacgt gcgagagctc
     3481 tgctccaaat acgcctccca ggacgaggcg ctccaggcca agggcagccg gccgcacaac
     3541 ctgcccgtca accggagcca ctcgctgcca gagaacatga tgcagccgca gccgcccctg
     3601 tcggggaagg tgggccgctg ctgcagcctg aacgccagga gggctccggc aggcccaggg
     3661 gtcgtccagc ctcagcctct ggcggggtca cctccaggcg cgccgggtgg aggggaggcc
     3721 ctgtacgtca ccgcagacct cacactggag gacagccggc ggatggtcat catggagaag
     3781 gggcccctgt ccggccccaa cgcgggactg gaggcagcca gcgggcgggg accgagctca
     3841 ccagcagccc aggcggggca gggcccggag ttccaggagt gtgcagagta tcggcctaaa
     3901 gaagagggtc ccagggacct ggcagaccca agccagcagg gcagagtgag gagcctgcgg
     3961 gagaaattcc aggccttgaa ctccatgggt tgacactgag tcctggggga gggagcagct
     4021 gtgccaaggg acggggagga acggtggcat cctcgatcac agcctgggtt caccgtgctc
     4081 acccggggcc ctcagaaagg ctgcccctgg gagagcgccc tggggcaccg ggcaagggcc
     4141 ttcacctgcc gtgggcgcgc cagtgacttg cgagcccctt tgccctccga ggccagtgtg
     4201 gccgcttccc ttgtatgtag ttcttctcta gtaagaggcc agatagttaa gctcatctct
     4261 tcccagggag agcgagccct gctcaggcct ccagtgttgc ctggccgctg ccagactgag
     4321 ggcccaccca ggggacacac aggagtgtgg cctggggagg ctttgttctt taactgtgcc
     4381 ttttcttagg atctgggcag gaacgaggcc cataatttat tgctttctac cctgtggtat
     4441 gttggtgtgc tcgcgcgtgt gtgtgtgagt gtgtgttctg ttgttgattt ccctcctggg
     4501 aagaacgtcg tggactctgt tcaggtactt ctgtgggttg tcctgctggc cccgtggttg
     4561 tcactaatgt acacacattt tgttatttgc caatggtgta ataaccactg ctgaccaacc
     4621 aa
//
LOCUS       XM_032618684            4878 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X5, mRNA.
ACCESSION   XM_032618684
VERSION     XM_032618684.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4878
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4878
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             74..4249
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X5"
                     /protein_id="XP_032474575.1"
                     /db_xref="GeneID:116746901"
                     /translation="MGALLRKANLPGAPPPGSNARMPVSASLHQDGSQERPVSLTSTT
                     SSSGSSRDSRGAMEEPSGSEASAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRAS
                     VAPAHKLSYVGRVVREIVETERTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNI
                     ESIYALNSQLLRDLDSCNSDPVAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQD
                     KQQAKFFRDRQELLQHSLPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDA
                     IDTMTCVAWYINDMKRRHEHAVRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRN
                     EKTFFLFDKALLITKKRGDHFVYKGHIPMVLRGWGPRSAPRLVLDCPLPLPQCSSLML
                     IESTRESPCFTVTHYKHSKQQYNIQAKTVEEKRSWTHHIKRLILENHHTTIPQKAKEA
                     ILEMDSYYPNRYRHSPERLKKASQDEAFTHVHQGRRQSEPGQLLYNRATLPSRQRGFT
                     VPGLKGHRKSEPSRHLLRQHSKKARAAGMKHAGSVGMLLDFEQPPCARGLQSEAEGAA
                     REEEEEEQAFQVSLKDLAGHEGCEQGAGPEPPGEEEEEEEESLAVAEQVADFASSLLA
                     ALHCWHYRANALLFSRGAMGKGRREPEDPKSCRRPSSRSPTTAEKCLSFESVSSLPEV
                     EPDPESGTEQEVSAAMEGPRTEEMPSDTEAPEVLEMQLDTHQLLLGLDPPGDMVDFIV
                     ADSTEDPKVLSSEDEEEEMGAAHEPESLLPPSVLDQASVIAERFVSSFSRRSSLALED
                     GKSSGFGTPRLTSRSSSVVSLEDSEKGLARRGSTTDTLGSQLPPEADISMGVAAESDP
                     SVNGTETQSPGCPAEPDRPSCTKESKLSSRDRLLLDKIKSYYESAEHHDAGFSVRRRE
                     SLSFIPKGLVRNSVSRINSLPRPDPEPVAPLGHKRQVGSRAASWALFDYPGPGQACAG
                     DPAPITDAEFRPSSEIVKIWEEVESTEGSPAKGPGQGQANSFDLHEPLFILEDRELGA
                     ITEESAAASPERASPTEPPSPAHLARELKELVKELSSGTQGELVTPLHPRILQLSHVM
                     DSHVSERVKSKVYQLARQYSLRIKSKSVTARPPQPWEKVALTTPHLQPEAGAPSAGRG
                     KRKPVLSLFNHEQPTAQEHSPPKSGSAREVSPRRFSFSPSATSPRTTSPGAWHIPRSP
                     LSPLDTETFNWPDVRELCSKYASQDEALQAKGSRPHNLPVNRSHSLPENMMQPQPPLS
                     GKVGRCCSLNARRAPAGPGVVQPQPLAGSPPGAPGGGEALYVTADLTLEDSRRMVIME
                     KGPLSGPNAGLEAASGRGPSSPAAQAGQGPEFQECAEYRPKEEGPRDLADPSQQGRVR
                     SLREKFQALNSMG"
     misc_feature    416..937
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    884..1387
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <3206..4189
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 tgttaactgc ttggctcctg gtgcttaggg agaatggagc tccccggccc cacgcggctc
       61 tcctggtgct cggatgggag cccttttgag aaaagcgaac ctccctggag cgcccccacc
      121 aggcagcaat gcaaggatgc ccgtctctgc ctcgctccac caagatggca gccaggagcg
      181 gcccgtgagc ctgacctcca ccacctcctc gtcaggctcc tcccgtgaca gccgcggggc
      241 catggaggag cccagcggct ccgaggcttc ggccgagaac ggggccggct ccccgcgcgg
      301 ccggcgtctc cccaacaaca actccagcag ctggctgagc gtgaggggct ccctgtcccc
      361 tttcaacagc cgggcgtcgg tggcgcctgc gcacaagctc agctacgtgg gtcgagtagt
      421 gcgggaaatc gtggaaacgg agcgcacgta cgtgcaggac ctgcgcagca tcgttgagga
      481 ctacctcttg aagatcattg acacgcctgg gctgctgaac ccggagcaag tcagtgccct
      541 ttttgggaac atagaaagca tctatgcact gaacagccag ctactcagag acctggacag
      601 ctgcaatagt gacccggtgg ctgtggccag ctgctttgtg gaaaggagcc aagagtttga
      661 tatctacacc cagtattgca acaactaccc caactcagtg gctgccctca ccgagtgcat
      721 gcaggacaag cagcaggcca agttctttcg ggaccggcag gagctgctgc agcactcact
      781 gcccttgggt tcctacctcc tgaagccagt ccagcgcatc ctcaagtacc acctgctact
      841 ccaggaaatc gccaaacatt ttgatgaaga agaggacggc tttgaggtgg tagaggatgc
      901 cattgacacc atgacttgcg tggcctggta catcaacgac atgaagagga gacatgagca
      961 cgcagtccgg ctccaggaga ttcagtctct gctcatcaac tggaaggggc cagacctgac
     1021 cacctacggg gagctcgtcc tggagggcac gttccgcgtg caccgtgtgc gcaacgagaa
     1081 gacctttttc ctctttgaca aagcactgct catcaccaag aagcggggag atcactttgt
     1141 ctacaagggt cacatcccga tggtcttgag gggctggggc cccaggtcag ctccccgcct
     1201 cgtgcttgac tgccctctcc ctctgcccca gtgctcctcc ctgatgctga ttgagagcac
     1261 cagagaatcc ccgtgcttca ccgtcacaca ctacaagcac agcaaacagc agtacaacat
     1321 ccaggccaaa actgtggagg agaaacggag ctggactcac cacatcaaga ggctcatcct
     1381 ggagaaccac cataccacca tcccccagaa ggccaaagaa gccatcttgg aaatggattc
     1441 ctattatccc aatcggtacc gccacagccc agagcgcctg aagaaggcct cccaggatga
     1501 ggcgttcacc catgtgcacc aggggcgccg gcagtctgag cctggtcagc tcctgtacaa
     1561 ccgggcaaca ctccccagca ggcagcgagg cttcacggtg ccaggcctta agggccatag
     1621 aaagtcggag ccatccagac atctgctcag gcaacacagc aagaaagcca gagcagcagg
     1681 aatgaagcat gcgggcagtg ttggcatgct cctggacttt gaacagcccc cctgtgctcg
     1741 gggcctgcag tcggaggctg aaggggctgc ccgggaggag gaggaggaag aacaggcctt
     1801 tcaggtctcc ctgaaggacc tggcagggca tgaaggctgc gagcaggggg ctgggccaga
     1861 gcccccaggc gaggaggagg aggaggagga ggagagcctg gcagtggcgg agcaggtagc
     1921 cgactttgcc agctccctgc tggccgccct ccactgctgg cactatcggg ccaacgcttt
     1981 acttttctcc cggggcgcta tggggaaggg gcgcagggag cccgaagacc ccaagagctg
     2041 ccgaaggccc agcagccgat ctccaaccac cgctgagaag tgcctgagct ttgagtctgt
     2101 gtcttccctg ccggaggttg agccagaccc tgagtctggg acagagcagg aggtgtctgc
     2161 tgccatggaa ggtcccagga ccgaggagat gccctcagac acagaggctc cagaagtcct
     2221 agaaatgcag cttgacaccc accagctgct gctgggactg gaccccccgg gtgacatggt
     2281 ggacttcatc gtggccgaca gcaccgagga ccctaaggtc ctgagcagtg aggacgagga
     2341 ggaggagatg ggggccgccc acgagcccga gagcctcctg cctccctctg tgctggacca
     2401 ggccagcgtc attgccgagc ggttcgtcag cagcttctct cggcggagca gcctggcgct
     2461 ggaggacggc aagtccagcg gcttcgggac cccgaggctg accagccgga gcagcagtgt
     2521 ggtcagccta gaggacagtg agaagggcct ggcccgacgt gggagcacca cagacaccct
     2581 gggctctcag ctccctccag aagcggacat cagtatgggg gtggccgcag agagcgaccc
     2641 ttctgtcaac gggacagaga cccagagccc aggctgccca gcggagccag acaggccttc
     2701 ctgcacgaag gaatcgaagc tttcttcccg agaccggctg ttgttggaca aaatcaagag
     2761 ctactatgaa agtgcagagc accacgatgc aggcttcagt gtccggcgcc gggagagcct
     2821 ctccttcatc cccaaaggat tggtgagaaa ctcagtctcc agaatcaaca gccttcccag
     2881 gccagacccg gagccagtgg ctccgctggg gcataagaga caggtgggtt cgcgggcagc
     2941 ctcgtgggcc ctctttgact acccaggacc aggccaggct tgtgctgggg acccagctcc
     3001 catcacagat gctgagttcc gcccgtcttc ggaaattgtg aagatctggg aggaagtgga
     3061 gtctactgag ggcagccctg cgaagggacc aggccaaggc caggccaata gctttgacct
     3121 gcacgagccc ctcttcatcc tggaggaccg tgagctgggg gccatcactg aggagtcggc
     3181 tgctgcctcg ccagagcgtg cctcccccac tgagcccccc agcccggccc acctggcccg
     3241 ggagctgaag gagctggtga aggagctgag cagcggcacc cagggggagc tggtgacccc
     3301 gctacacccc cgcatcctgc agctctccca cgtgatggac agccacgtga gcgagcgagt
     3361 caagagcaag gtctaccagc tggctcgcca gtacagcctc cggatcaaga gcaagtcggt
     3421 gacggccagg ccaccgcagc cgtgggaaaa ggtggctctt accacccccc acctacagcc
     3481 ggaggctgga gcaccatctg ctggcagagg taagaggaaa ccagtgctgt ctctcttcaa
     3541 ccacgagcag cccacggccc aggaacacag cccgcccaag tccggctctg ccagggaggt
     3601 atctccgcgg cgtttttcct tcagcccctc ggccaccagc ccgaggacca cctcgcctgg
     3661 ggcctggcac atcccccgaa gccccctcag ccccttggac accgagactt tcaactggcc
     3721 cgacgtgcga gagctctgct ccaaatacgc ctcccaggac gaggcgctcc aggccaaggg
     3781 cagccggccg cacaacctgc ccgtcaaccg gagccactcg ctgccagaga acatgatgca
     3841 gccgcagccg cccctgtcgg ggaaggtggg ccgctgctgc agcctgaacg ccaggagggc
     3901 tccggcaggc ccaggggtcg tccagcctca gcctctggcg gggtcacctc caggcgcgcc
     3961 gggtggaggg gaggccctgt acgtcaccgc agacctcaca ctggaggaca gccggcggat
     4021 ggtcatcatg gagaaggggc ccctgtccgg ccccaacgcg ggactggagg cagccagcgg
     4081 gcggggaccg agctcaccag cagcccaggc ggggcagggc ccggagttcc aggagtgtgc
     4141 agagtatcgg cctaaagaag agggtcccag ggacctggca gacccaagcc agcagggcag
     4201 agtgaggagc ctgcgggaga aattccaggc cttgaactcc atgggttgac actgagtcct
     4261 gggggaggga gcagctgtgc caagggacgg ggaggaacgg tggcatcctc gatcacagcc
     4321 tgggttcacc gtgctcaccc ggggccctca gaaaggctgc ccctgggaga gcgccctggg
     4381 gcaccgggca agggccttca cctgccgtgg gcgcgccagt gacttgcgag cccctttgcc
     4441 ctccgaggcc agtgtggccg cttcccttgt atgtagttct tctctagtaa gaggccagat
     4501 agttaagctc atctcttccc agggagagcg agccctgctc aggcctccag tgttgcctgg
     4561 ccgctgccag actgagggcc cacccagggg acacacagga gtgtggcctg gggaggcttt
     4621 gttctttaac tgtgcctttt cttaggatct gggcaggaac gaggcccata atttattgct
     4681 ttctaccctg tggtatgttg gtgtgctcgc gcgtgtgtgt gtgagtgtgt gttctgttgt
     4741 tgatttccct cctgggaaga acgtcgtgga ctctgttcag gtacttctgt gggttgtcct
     4801 gctggccccg tggttgtcac taatgtacac acattttgtt atttgccaat ggtgtaataa
     4861 ccactgctga ccaaccaa
//
LOCUS       XM_032618689            5022 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X6, mRNA.
ACCESSION   XM_032618689
VERSION     XM_032618689.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5022
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5022
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             281..4393
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X6"
                     /protein_id="XP_032474580.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPMVLRGWGPRSAPRLVLDCPLPLPQCSSLMLIESTRESPCFTVTHYKHSKQQ
                     YNIQAKTVEEKRSWTHHIKRLILENHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKK
                     ASQDEAFTHVHQGRRQSEPGQLLYNRATLPSRQRGFTVPGLKGHRKSEPSRHLLRQHS
                     KKARAAGMKHAGSVGMLLDFEQPPCARGLQSEAEGAAREEEEEEQAFQVSLKDLAGHE
                     GCEQGAGPEPPGEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGK
                     GRREPEDPKSCRRPSSRSPTTAEKCLSFESVSSLPEVEPDPESGTEQEVSAAMEGPRT
                     EEMPSDTEAPEVLEMQLDTHQLLLGLDPPGDMVDFIVADSTEDPKVLSSEDEEEEMGA
                     AHEPESLLPPSVLDQASVIAERFVSSFSRRSSLALEDGKSSGFGTPRLTSRSSSVVSL
                     EDSEKGLARRGSTTDTLGSQLPPEADISMGVAAESDPSVNGTETQSPGCPAEPDRPSC
                     TKESKLSSRDRLLLDKIKSYYESAEHHDAGFSVRRRESLSFIPKGLVRNSVSRINSLP
                     RPDPEPVAPLGHKRQVGSRAASWALFDYPGPGQACAGDPAPITDAEFRPSSEIVKIWE
                     EVESTEGSPAKGPGQGQANSFDLHEPLFILEDRELGAITEESAAASPERASPTEPPSP
                     AHLARELKELVKELSSGTQGELVTPLHPRILQLSHVMDSHVSERVKSKVYQLARQYSL
                     RIKSKSVTARPPQPWEKVALTTPHLQPEAGAPSAGRGKRKPVLSLFNHEQPTAQEHSP
                     PKSGSAREVSPRRFSFSPSATSPRTTSPGAWHIPRSPLSPLDTETFNWPDVRELCSKY
                     ASQDEALQAKGSRPHNLPVNRSHSLPENMMQPQPPLSGKVGRCCSLNARRAPAGPGVV
                     QPQPLAGSPPGAPGGGEALYVTADLTLEDSRRMVIMEKGPLSGPNAGLEAASGRGPSS
                     PAAQAGQGPEFQECAEYRPKEEGPRDLADPSQQGRVRSLREKFQALNSMG"
     misc_feature    560..1081
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    1028..1531
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <3350..4333
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 gccgctctgc tcggccccga cttcctgccg ggcgctggaa ggcgcgcgcg ggctggggtc
       61 cccgggggcc gcgctagcag ctggccgcgc cccggccgcc aaggggctgg ccgtgggcgg
      121 gagcggccgg cagcctcggc cccttcccgg agcgacattc aaactcgcgc ccgcgttgcg
      181 gcggcacctg ggtggcttcg cgcgccgtgc gttctggatc cagccgggcg gccgctgctc
      241 gaacctccct ggagcgcccc caccaggcag caatgcaagg atgcccgtct ctgcctcgct
      301 ccaccaagat ggcagccagg agcggcccgt gagcctgacc tccaccacct cctcgtcagg
      361 ctcctcccgt gacagccgcg gggccatgga ggagcccagc ggctccgagg cttcggccga
      421 gaacggggcc ggctccccgc gcggccggcg tctccccaac aacaactcca gcagctggct
      481 gagcgtgagg ggctccctgt cccctttcaa cagccgggcg tcggtggcgc ctgcgcacaa
      541 gctcagctac gtgggtcgag tagtgcggga aatcgtggaa acggagcgca cgtacgtgca
      601 ggacctgcgc agcatcgttg aggactacct cttgaagatc attgacacgc ctgggctgct
      661 gaacccggag caagtcagtg ccctttttgg gaacatagaa agcatctatg cactgaacag
      721 ccagctactc agagacctgg acagctgcaa tagtgacccg gtggctgtgg ccagctgctt
      781 tgtggaaagg agccaagagt ttgatatcta cacccagtat tgcaacaact accccaactc
      841 agtggctgcc ctcaccgagt gcatgcagga caagcagcag gccaagttct ttcgggaccg
      901 gcaggagctg ctgcagcact cactgccctt gggttcctac ctcctgaagc cagtccagcg
      961 catcctcaag taccacctgc tactccagga aatcgccaaa cattttgatg aagaagagga
     1021 cggctttgag gtggtagagg atgccattga caccatgact tgcgtggcct ggtacatcaa
     1081 cgacatgaag aggagacatg agcacgcagt ccggctccag gagattcagt ctctgctcat
     1141 caactggaag gggccagacc tgaccaccta cggggagctc gtcctggagg gcacgttccg
     1201 cgtgcaccgt gtgcgcaacg agaagacctt tttcctcttt gacaaagcac tgctcatcac
     1261 caagaagcgg ggagatcact ttgtctacaa gggtcacatc ccgatggtct tgaggggctg
     1321 gggccccagg tcagctcccc gcctcgtgct tgactgccct ctccctctgc cccagtgctc
     1381 ctccctgatg ctgattgaga gcaccagaga atccccgtgc ttcaccgtca cacactacaa
     1441 gcacagcaaa cagcagtaca acatccaggc caaaactgtg gaggagaaac ggagctggac
     1501 tcaccacatc aagaggctca tcctggagaa ccaccatacc accatccccc agaaggccaa
     1561 agaagccatc ttggaaatgg attcctatta tcccaatcgg taccgccaca gcccagagcg
     1621 cctgaagaag gcctcccagg atgaggcgtt cacccatgtg caccaggggc gccggcagtc
     1681 tgagcctggt cagctcctgt acaaccgggc aacactcccc agcaggcagc gaggcttcac
     1741 ggtgccaggc cttaagggcc atagaaagtc ggagccatcc agacatctgc tcaggcaaca
     1801 cagcaagaaa gccagagcag caggaatgaa gcatgcgggc agtgttggca tgctcctgga
     1861 ctttgaacag cccccctgtg ctcggggcct gcagtcggag gctgaagggg ctgcccggga
     1921 ggaggaggag gaagaacagg cctttcaggt ctccctgaag gacctggcag ggcatgaagg
     1981 ctgcgagcag ggggctgggc cagagccccc aggcgaggag gaggaggagg aggaggagag
     2041 cctggcagtg gcggagcagg tagccgactt tgccagctcc ctgctggccg ccctccactg
     2101 ctggcactat cgggccaacg ctttactttt ctcccggggc gctatgggga aggggcgcag
     2161 ggagcccgaa gaccccaaga gctgccgaag gcccagcagc cgatctccaa ccaccgctga
     2221 gaagtgcctg agctttgagt ctgtgtcttc cctgccggag gttgagccag accctgagtc
     2281 tgggacagag caggaggtgt ctgctgccat ggaaggtccc aggaccgagg agatgccctc
     2341 agacacagag gctccagaag tcctagaaat gcagcttgac acccaccagc tgctgctggg
     2401 actggacccc ccgggtgaca tggtggactt catcgtggcc gacagcaccg aggaccctaa
     2461 ggtcctgagc agtgaggacg aggaggagga gatgggggcc gcccacgagc ccgagagcct
     2521 cctgcctccc tctgtgctgg accaggccag cgtcattgcc gagcggttcg tcagcagctt
     2581 ctctcggcgg agcagcctgg cgctggagga cggcaagtcc agcggcttcg ggaccccgag
     2641 gctgaccagc cggagcagca gtgtggtcag cctagaggac agtgagaagg gcctggcccg
     2701 acgtgggagc accacagaca ccctgggctc tcagctccct ccagaagcgg acatcagtat
     2761 gggggtggcc gcagagagcg acccttctgt caacgggaca gagacccaga gcccaggctg
     2821 cccagcggag ccagacaggc cttcctgcac gaaggaatcg aagctttctt cccgagaccg
     2881 gctgttgttg gacaaaatca agagctacta tgaaagtgca gagcaccacg atgcaggctt
     2941 cagtgtccgg cgccgggaga gcctctcctt catccccaaa ggattggtga gaaactcagt
     3001 ctccagaatc aacagccttc ccaggccaga cccggagcca gtggctccgc tggggcataa
     3061 gagacaggtg ggttcgcggg cagcctcgtg ggccctcttt gactacccag gaccaggcca
     3121 ggcttgtgct ggggacccag ctcccatcac agatgctgag ttccgcccgt cttcggaaat
     3181 tgtgaagatc tgggaggaag tggagtctac tgagggcagc cctgcgaagg gaccaggcca
     3241 aggccaggcc aatagctttg acctgcacga gcccctcttc atcctggagg accgtgagct
     3301 gggggccatc actgaggagt cggctgctgc ctcgccagag cgtgcctccc ccactgagcc
     3361 ccccagcccg gcccacctgg cccgggagct gaaggagctg gtgaaggagc tgagcagcgg
     3421 cacccagggg gagctggtga ccccgctaca cccccgcatc ctgcagctct cccacgtgat
     3481 ggacagccac gtgagcgagc gagtcaagag caaggtctac cagctggctc gccagtacag
     3541 cctccggatc aagagcaagt cggtgacggc caggccaccg cagccgtggg aaaaggtggc
     3601 tcttaccacc ccccacctac agccggaggc tggagcacca tctgctggca gaggtaagag
     3661 gaaaccagtg ctgtctctct tcaaccacga gcagcccacg gcccaggaac acagcccgcc
     3721 caagtccggc tctgccaggg aggtatctcc gcggcgtttt tccttcagcc cctcggccac
     3781 cagcccgagg accacctcgc ctggggcctg gcacatcccc cgaagccccc tcagcccctt
     3841 ggacaccgag actttcaact ggcccgacgt gcgagagctc tgctccaaat acgcctccca
     3901 ggacgaggcg ctccaggcca agggcagccg gccgcacaac ctgcccgtca accggagcca
     3961 ctcgctgcca gagaacatga tgcagccgca gccgcccctg tcggggaagg tgggccgctg
     4021 ctgcagcctg aacgccagga gggctccggc aggcccaggg gtcgtccagc ctcagcctct
     4081 ggcggggtca cctccaggcg cgccgggtgg aggggaggcc ctgtacgtca ccgcagacct
     4141 cacactggag gacagccggc ggatggtcat catggagaag gggcccctgt ccggccccaa
     4201 cgcgggactg gaggcagcca gcgggcgggg accgagctca ccagcagccc aggcggggca
     4261 gggcccggag ttccaggagt gtgcagagta tcggcctaaa gaagagggtc ccagggacct
     4321 ggcagaccca agccagcagg gcagagtgag gagcctgcgg gagaaattcc aggccttgaa
     4381 ctccatgggt tgacactgag tcctggggga gggagcagct gtgccaaggg acggggagga
     4441 acggtggcat cctcgatcac agcctgggtt caccgtgctc acccggggcc ctcagaaagg
     4501 ctgcccctgg gagagcgccc tggggcaccg ggcaagggcc ttcacctgcc gtgggcgcgc
     4561 cagtgacttg cgagcccctt tgccctccga ggccagtgtg gccgcttccc ttgtatgtag
     4621 ttcttctcta gtaagaggcc agatagttaa gctcatctct tcccagggag agcgagccct
     4681 gctcaggcct ccagtgttgc ctggccgctg ccagactgag ggcccaccca ggggacacac
     4741 aggagtgtgg cctggggagg ctttgttctt taactgtgcc ttttcttagg atctgggcag
     4801 gaacgaggcc cataatttat tgctttctac cctgtggtat gttggtgtgc tcgcgcgtgt
     4861 gtgtgtgagt gtgtgttctg ttgttgattt ccctcctggg aagaacgtcg tggactctgt
     4921 tcaggtactt ctgtgggttg tcctgctggc cccgtggttg tcactaatgt acacacattt
     4981 tgttatttgc caatggtgta ataaccactg ctgaccaacc aa
//
LOCUS       XM_032618697            4860 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X7, mRNA.
ACCESSION   XM_032618697
VERSION     XM_032618697.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4860
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4860
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             119..4231
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X6"
                     /protein_id="XP_032474588.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPMVLRGWGPRSAPRLVLDCPLPLPQCSSLMLIESTRESPCFTVTHYKHSKQQ
                     YNIQAKTVEEKRSWTHHIKRLILENHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKK
                     ASQDEAFTHVHQGRRQSEPGQLLYNRATLPSRQRGFTVPGLKGHRKSEPSRHLLRQHS
                     KKARAAGMKHAGSVGMLLDFEQPPCARGLQSEAEGAAREEEEEEQAFQVSLKDLAGHE
                     GCEQGAGPEPPGEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGK
                     GRREPEDPKSCRRPSSRSPTTAEKCLSFESVSSLPEVEPDPESGTEQEVSAAMEGPRT
                     EEMPSDTEAPEVLEMQLDTHQLLLGLDPPGDMVDFIVADSTEDPKVLSSEDEEEEMGA
                     AHEPESLLPPSVLDQASVIAERFVSSFSRRSSLALEDGKSSGFGTPRLTSRSSSVVSL
                     EDSEKGLARRGSTTDTLGSQLPPEADISMGVAAESDPSVNGTETQSPGCPAEPDRPSC
                     TKESKLSSRDRLLLDKIKSYYESAEHHDAGFSVRRRESLSFIPKGLVRNSVSRINSLP
                     RPDPEPVAPLGHKRQVGSRAASWALFDYPGPGQACAGDPAPITDAEFRPSSEIVKIWE
                     EVESTEGSPAKGPGQGQANSFDLHEPLFILEDRELGAITEESAAASPERASPTEPPSP
                     AHLARELKELVKELSSGTQGELVTPLHPRILQLSHVMDSHVSERVKSKVYQLARQYSL
                     RIKSKSVTARPPQPWEKVALTTPHLQPEAGAPSAGRGKRKPVLSLFNHEQPTAQEHSP
                     PKSGSAREVSPRRFSFSPSATSPRTTSPGAWHIPRSPLSPLDTETFNWPDVRELCSKY
                     ASQDEALQAKGSRPHNLPVNRSHSLPENMMQPQPPLSGKVGRCCSLNARRAPAGPGVV
                     QPQPLAGSPPGAPGGGEALYVTADLTLEDSRRMVIMEKGPLSGPNAGLEAASGRGPSS
                     PAAQAGQGPEFQECAEYRPKEEGPRDLADPSQQGRVRSLREKFQALNSMG"
     misc_feature    398..919
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    866..1369
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <3188..4171
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 cctgtcacca tccagcagga gctggacagc ccagcgggcc ctgtggtgaa ggagcttcct
       61 ggtgcctaga ggaaaccaga acctccctgg agcgccccca ccaggcagca atgcaaggat
      121 gcccgtctct gcctcgctcc accaagatgg cagccaggag cggcccgtga gcctgacctc
      181 caccacctcc tcgtcaggct cctcccgtga cagccgcggg gccatggagg agcccagcgg
      241 ctccgaggct tcggccgaga acggggccgg ctccccgcgc ggccggcgtc tccccaacaa
      301 caactccagc agctggctga gcgtgagggg ctccctgtcc cctttcaaca gccgggcgtc
      361 ggtggcgcct gcgcacaagc tcagctacgt gggtcgagta gtgcgggaaa tcgtggaaac
      421 ggagcgcacg tacgtgcagg acctgcgcag catcgttgag gactacctct tgaagatcat
      481 tgacacgcct gggctgctga acccggagca agtcagtgcc ctttttggga acatagaaag
      541 catctatgca ctgaacagcc agctactcag agacctggac agctgcaata gtgacccggt
      601 ggctgtggcc agctgctttg tggaaaggag ccaagagttt gatatctaca cccagtattg
      661 caacaactac cccaactcag tggctgccct caccgagtgc atgcaggaca agcagcaggc
      721 caagttcttt cgggaccggc aggagctgct gcagcactca ctgcccttgg gttcctacct
      781 cctgaagcca gtccagcgca tcctcaagta ccacctgcta ctccaggaaa tcgccaaaca
      841 ttttgatgaa gaagaggacg gctttgaggt ggtagaggat gccattgaca ccatgacttg
      901 cgtggcctgg tacatcaacg acatgaagag gagacatgag cacgcagtcc ggctccagga
      961 gattcagtct ctgctcatca actggaaggg gccagacctg accacctacg gggagctcgt
     1021 cctggagggc acgttccgcg tgcaccgtgt gcgcaacgag aagacctttt tcctctttga
     1081 caaagcactg ctcatcacca agaagcgggg agatcacttt gtctacaagg gtcacatccc
     1141 gatggtcttg aggggctggg gccccaggtc agctccccgc ctcgtgcttg actgccctct
     1201 ccctctgccc cagtgctcct ccctgatgct gattgagagc accagagaat ccccgtgctt
     1261 caccgtcaca cactacaagc acagcaaaca gcagtacaac atccaggcca aaactgtgga
     1321 ggagaaacgg agctggactc accacatcaa gaggctcatc ctggagaacc accataccac
     1381 catcccccag aaggccaaag aagccatctt ggaaatggat tcctattatc ccaatcggta
     1441 ccgccacagc ccagagcgcc tgaagaaggc ctcccaggat gaggcgttca cccatgtgca
     1501 ccaggggcgc cggcagtctg agcctggtca gctcctgtac aaccgggcaa cactccccag
     1561 caggcagcga ggcttcacgg tgccaggcct taagggccat agaaagtcgg agccatccag
     1621 acatctgctc aggcaacaca gcaagaaagc cagagcagca ggaatgaagc atgcgggcag
     1681 tgttggcatg ctcctggact ttgaacagcc cccctgtgct cggggcctgc agtcggaggc
     1741 tgaaggggct gcccgggagg aggaggagga agaacaggcc tttcaggtct ccctgaagga
     1801 cctggcaggg catgaaggct gcgagcaggg ggctgggcca gagcccccag gcgaggagga
     1861 ggaggaggag gaggagagcc tggcagtggc ggagcaggta gccgactttg ccagctccct
     1921 gctggccgcc ctccactgct ggcactatcg ggccaacgct ttacttttct cccggggcgc
     1981 tatggggaag gggcgcaggg agcccgaaga ccccaagagc tgccgaaggc ccagcagccg
     2041 atctccaacc accgctgaga agtgcctgag ctttgagtct gtgtcttccc tgccggaggt
     2101 tgagccagac cctgagtctg ggacagagca ggaggtgtct gctgccatgg aaggtcccag
     2161 gaccgaggag atgccctcag acacagaggc tccagaagtc ctagaaatgc agcttgacac
     2221 ccaccagctg ctgctgggac tggacccccc gggtgacatg gtggacttca tcgtggccga
     2281 cagcaccgag gaccctaagg tcctgagcag tgaggacgag gaggaggaga tgggggccgc
     2341 ccacgagccc gagagcctcc tgcctccctc tgtgctggac caggccagcg tcattgccga
     2401 gcggttcgtc agcagcttct ctcggcggag cagcctggcg ctggaggacg gcaagtccag
     2461 cggcttcggg accccgaggc tgaccagccg gagcagcagt gtggtcagcc tagaggacag
     2521 tgagaagggc ctggcccgac gtgggagcac cacagacacc ctgggctctc agctccctcc
     2581 agaagcggac atcagtatgg gggtggccgc agagagcgac ccttctgtca acgggacaga
     2641 gacccagagc ccaggctgcc cagcggagcc agacaggcct tcctgcacga aggaatcgaa
     2701 gctttcttcc cgagaccggc tgttgttgga caaaatcaag agctactatg aaagtgcaga
     2761 gcaccacgat gcaggcttca gtgtccggcg ccgggagagc ctctccttca tccccaaagg
     2821 attggtgaga aactcagtct ccagaatcaa cagccttccc aggccagacc cggagccagt
     2881 ggctccgctg gggcataaga gacaggtggg ttcgcgggca gcctcgtggg ccctctttga
     2941 ctacccagga ccaggccagg cttgtgctgg ggacccagct cccatcacag atgctgagtt
     3001 ccgcccgtct tcggaaattg tgaagatctg ggaggaagtg gagtctactg agggcagccc
     3061 tgcgaaggga ccaggccaag gccaggccaa tagctttgac ctgcacgagc ccctcttcat
     3121 cctggaggac cgtgagctgg gggccatcac tgaggagtcg gctgctgcct cgccagagcg
     3181 tgcctccccc actgagcccc ccagcccggc ccacctggcc cgggagctga aggagctggt
     3241 gaaggagctg agcagcggca cccaggggga gctggtgacc ccgctacacc cccgcatcct
     3301 gcagctctcc cacgtgatgg acagccacgt gagcgagcga gtcaagagca aggtctacca
     3361 gctggctcgc cagtacagcc tccggatcaa gagcaagtcg gtgacggcca ggccaccgca
     3421 gccgtgggaa aaggtggctc ttaccacccc ccacctacag ccggaggctg gagcaccatc
     3481 tgctggcaga ggtaagagga aaccagtgct gtctctcttc aaccacgagc agcccacggc
     3541 ccaggaacac agcccgccca agtccggctc tgccagggag gtatctccgc ggcgtttttc
     3601 cttcagcccc tcggccacca gcccgaggac cacctcgcct ggggcctggc acatcccccg
     3661 aagccccctc agccccttgg acaccgagac tttcaactgg cccgacgtgc gagagctctg
     3721 ctccaaatac gcctcccagg acgaggcgct ccaggccaag ggcagccggc cgcacaacct
     3781 gcccgtcaac cggagccact cgctgccaga gaacatgatg cagccgcagc cgcccctgtc
     3841 ggggaaggtg ggccgctgct gcagcctgaa cgccaggagg gctccggcag gcccaggggt
     3901 cgtccagcct cagcctctgg cggggtcacc tccaggcgcg ccgggtggag gggaggccct
     3961 gtacgtcacc gcagacctca cactggagga cagccggcgg atggtcatca tggagaaggg
     4021 gcccctgtcc ggccccaacg cgggactgga ggcagccagc gggcggggac cgagctcacc
     4081 agcagcccag gcggggcagg gcccggagtt ccaggagtgt gcagagtatc ggcctaaaga
     4141 agagggtccc agggacctgg cagacccaag ccagcagggc agagtgagga gcctgcggga
     4201 gaaattccag gccttgaact ccatgggttg acactgagtc ctgggggagg gagcagctgt
     4261 gccaagggac ggggaggaac ggtggcatcc tcgatcacag cctgggttca ccgtgctcac
     4321 ccggggccct cagaaaggct gcccctggga gagcgccctg gggcaccggg caagggcctt
     4381 cacctgccgt gggcgcgcca gtgacttgcg agcccctttg ccctccgagg ccagtgtggc
     4441 cgcttccctt gtatgtagtt cttctctagt aagaggccag atagttaagc tcatctcttc
     4501 ccagggagag cgagccctgc tcaggcctcc agtgttgcct ggccgctgcc agactgaggg
     4561 cccacccagg ggacacacag gagtgtggcc tggggaggct ttgttcttta actgtgcctt
     4621 ttcttaggat ctgggcagga acgaggccca taatttattg ctttctaccc tgtggtatgt
     4681 tggtgtgctc gcgcgtgtgt gtgtgagtgt gtgttctgtt gttgatttcc ctcctgggaa
     4741 gaacgtcgtg gactctgttc aggtacttct gtgggttgtc ctgctggccc cgtggttgtc
     4801 actaatgtac acacattttg ttatttgcca atggtgtaat aaccactgct gaccaaccaa
//
LOCUS       XM_032618706            4801 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X8, mRNA.
ACCESSION   XM_032618706
VERSION     XM_032618706.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4801
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4801
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             60..4172
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X6"
                     /protein_id="XP_032474597.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPMVLRGWGPRSAPRLVLDCPLPLPQCSSLMLIESTRESPCFTVTHYKHSKQQ
                     YNIQAKTVEEKRSWTHHIKRLILENHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKK
                     ASQDEAFTHVHQGRRQSEPGQLLYNRATLPSRQRGFTVPGLKGHRKSEPSRHLLRQHS
                     KKARAAGMKHAGSVGMLLDFEQPPCARGLQSEAEGAAREEEEEEQAFQVSLKDLAGHE
                     GCEQGAGPEPPGEEEEEEEESLAVAEQVADFASSLLAALHCWHYRANALLFSRGAMGK
                     GRREPEDPKSCRRPSSRSPTTAEKCLSFESVSSLPEVEPDPESGTEQEVSAAMEGPRT
                     EEMPSDTEAPEVLEMQLDTHQLLLGLDPPGDMVDFIVADSTEDPKVLSSEDEEEEMGA
                     AHEPESLLPPSVLDQASVIAERFVSSFSRRSSLALEDGKSSGFGTPRLTSRSSSVVSL
                     EDSEKGLARRGSTTDTLGSQLPPEADISMGVAAESDPSVNGTETQSPGCPAEPDRPSC
                     TKESKLSSRDRLLLDKIKSYYESAEHHDAGFSVRRRESLSFIPKGLVRNSVSRINSLP
                     RPDPEPVAPLGHKRQVGSRAASWALFDYPGPGQACAGDPAPITDAEFRPSSEIVKIWE
                     EVESTEGSPAKGPGQGQANSFDLHEPLFILEDRELGAITEESAAASPERASPTEPPSP
                     AHLARELKELVKELSSGTQGELVTPLHPRILQLSHVMDSHVSERVKSKVYQLARQYSL
                     RIKSKSVTARPPQPWEKVALTTPHLQPEAGAPSAGRGKRKPVLSLFNHEQPTAQEHSP
                     PKSGSAREVSPRRFSFSPSATSPRTTSPGAWHIPRSPLSPLDTETFNWPDVRELCSKY
                     ASQDEALQAKGSRPHNLPVNRSHSLPENMMQPQPPLSGKVGRCCSLNARRAPAGPGVV
                     QPQPLAGSPPGAPGGGEALYVTADLTLEDSRRMVIMEKGPLSGPNAGLEAASGRGPSS
                     PAAQAGQGPEFQECAEYRPKEEGPRDLADPSQQGRVRSLREKFQALNSMG"
     misc_feature    339..860
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    807..1310
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <3129..4112
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 aagagccgga tccttgacag aacctccctg gagcgccccc accaggcagc aatgcaagga
       61 tgcccgtctc tgcctcgctc caccaagatg gcagccagga gcggcccgtg agcctgacct
      121 ccaccacctc ctcgtcaggc tcctcccgtg acagccgcgg ggccatggag gagcccagcg
      181 gctccgaggc ttcggccgag aacggggccg gctccccgcg cggccggcgt ctccccaaca
      241 acaactccag cagctggctg agcgtgaggg gctccctgtc ccctttcaac agccgggcgt
      301 cggtggcgcc tgcgcacaag ctcagctacg tgggtcgagt agtgcgggaa atcgtggaaa
      361 cggagcgcac gtacgtgcag gacctgcgca gcatcgttga ggactacctc ttgaagatca
      421 ttgacacgcc tgggctgctg aacccggagc aagtcagtgc cctttttggg aacatagaaa
      481 gcatctatgc actgaacagc cagctactca gagacctgga cagctgcaat agtgacccgg
      541 tggctgtggc cagctgcttt gtggaaagga gccaagagtt tgatatctac acccagtatt
      601 gcaacaacta ccccaactca gtggctgccc tcaccgagtg catgcaggac aagcagcagg
      661 ccaagttctt tcgggaccgg caggagctgc tgcagcactc actgcccttg ggttcctacc
      721 tcctgaagcc agtccagcgc atcctcaagt accacctgct actccaggaa atcgccaaac
      781 attttgatga agaagaggac ggctttgagg tggtagagga tgccattgac accatgactt
      841 gcgtggcctg gtacatcaac gacatgaaga ggagacatga gcacgcagtc cggctccagg
      901 agattcagtc tctgctcatc aactggaagg ggccagacct gaccacctac ggggagctcg
      961 tcctggaggg cacgttccgc gtgcaccgtg tgcgcaacga gaagaccttt ttcctctttg
     1021 acaaagcact gctcatcacc aagaagcggg gagatcactt tgtctacaag ggtcacatcc
     1081 cgatggtctt gaggggctgg ggccccaggt cagctccccg cctcgtgctt gactgccctc
     1141 tccctctgcc ccagtgctcc tccctgatgc tgattgagag caccagagaa tccccgtgct
     1201 tcaccgtcac acactacaag cacagcaaac agcagtacaa catccaggcc aaaactgtgg
     1261 aggagaaacg gagctggact caccacatca agaggctcat cctggagaac caccatacca
     1321 ccatccccca gaaggccaaa gaagccatct tggaaatgga ttcctattat cccaatcggt
     1381 accgccacag cccagagcgc ctgaagaagg cctcccagga tgaggcgttc acccatgtgc
     1441 accaggggcg ccggcagtct gagcctggtc agctcctgta caaccgggca acactcccca
     1501 gcaggcagcg aggcttcacg gtgccaggcc ttaagggcca tagaaagtcg gagccatcca
     1561 gacatctgct caggcaacac agcaagaaag ccagagcagc aggaatgaag catgcgggca
     1621 gtgttggcat gctcctggac tttgaacagc ccccctgtgc tcggggcctg cagtcggagg
     1681 ctgaaggggc tgcccgggag gaggaggagg aagaacaggc ctttcaggtc tccctgaagg
     1741 acctggcagg gcatgaaggc tgcgagcagg gggctgggcc agagccccca ggcgaggagg
     1801 aggaggagga ggaggagagc ctggcagtgg cggagcaggt agccgacttt gccagctccc
     1861 tgctggccgc cctccactgc tggcactatc gggccaacgc tttacttttc tcccggggcg
     1921 ctatggggaa ggggcgcagg gagcccgaag accccaagag ctgccgaagg cccagcagcc
     1981 gatctccaac caccgctgag aagtgcctga gctttgagtc tgtgtcttcc ctgccggagg
     2041 ttgagccaga ccctgagtct gggacagagc aggaggtgtc tgctgccatg gaaggtccca
     2101 ggaccgagga gatgccctca gacacagagg ctccagaagt cctagaaatg cagcttgaca
     2161 cccaccagct gctgctggga ctggaccccc cgggtgacat ggtggacttc atcgtggccg
     2221 acagcaccga ggaccctaag gtcctgagca gtgaggacga ggaggaggag atgggggccg
     2281 cccacgagcc cgagagcctc ctgcctccct ctgtgctgga ccaggccagc gtcattgccg
     2341 agcggttcgt cagcagcttc tctcggcgga gcagcctggc gctggaggac ggcaagtcca
     2401 gcggcttcgg gaccccgagg ctgaccagcc ggagcagcag tgtggtcagc ctagaggaca
     2461 gtgagaaggg cctggcccga cgtgggagca ccacagacac cctgggctct cagctccctc
     2521 cagaagcgga catcagtatg ggggtggccg cagagagcga cccttctgtc aacgggacag
     2581 agacccagag cccaggctgc ccagcggagc cagacaggcc ttcctgcacg aaggaatcga
     2641 agctttcttc ccgagaccgg ctgttgttgg acaaaatcaa gagctactat gaaagtgcag
     2701 agcaccacga tgcaggcttc agtgtccggc gccgggagag cctctccttc atccccaaag
     2761 gattggtgag aaactcagtc tccagaatca acagccttcc caggccagac ccggagccag
     2821 tggctccgct ggggcataag agacaggtgg gttcgcgggc agcctcgtgg gccctctttg
     2881 actacccagg accaggccag gcttgtgctg gggacccagc tcccatcaca gatgctgagt
     2941 tccgcccgtc ttcggaaatt gtgaagatct gggaggaagt ggagtctact gagggcagcc
     3001 ctgcgaaggg accaggccaa ggccaggcca atagctttga cctgcacgag cccctcttca
     3061 tcctggagga ccgtgagctg ggggccatca ctgaggagtc ggctgctgcc tcgccagagc
     3121 gtgcctcccc cactgagccc cccagcccgg cccacctggc ccgggagctg aaggagctgg
     3181 tgaaggagct gagcagcggc acccaggggg agctggtgac cccgctacac ccccgcatcc
     3241 tgcagctctc ccacgtgatg gacagccacg tgagcgagcg agtcaagagc aaggtctacc
     3301 agctggctcg ccagtacagc ctccggatca agagcaagtc ggtgacggcc aggccaccgc
     3361 agccgtggga aaaggtggct cttaccaccc cccacctaca gccggaggct ggagcaccat
     3421 ctgctggcag aggtaagagg aaaccagtgc tgtctctctt caaccacgag cagcccacgg
     3481 cccaggaaca cagcccgccc aagtccggct ctgccaggga ggtatctccg cggcgttttt
     3541 ccttcagccc ctcggccacc agcccgagga ccacctcgcc tggggcctgg cacatccccc
     3601 gaagccccct cagccccttg gacaccgaga ctttcaactg gcccgacgtg cgagagctct
     3661 gctccaaata cgcctcccag gacgaggcgc tccaggccaa gggcagccgg ccgcacaacc
     3721 tgcccgtcaa ccggagccac tcgctgccag agaacatgat gcagccgcag ccgcccctgt
     3781 cggggaaggt gggccgctgc tgcagcctga acgccaggag ggctccggca ggcccagggg
     3841 tcgtccagcc tcagcctctg gcggggtcac ctccaggcgc gccgggtgga ggggaggccc
     3901 tgtacgtcac cgcagacctc acactggagg acagccggcg gatggtcatc atggagaagg
     3961 ggcccctgtc cggccccaac gcgggactgg aggcagccag cgggcgggga ccgagctcac
     4021 cagcagccca ggcggggcag ggcccggagt tccaggagtg tgcagagtat cggcctaaag
     4081 aagagggtcc cagggacctg gcagacccaa gccagcaggg cagagtgagg agcctgcggg
     4141 agaaattcca ggccttgaac tccatgggtt gacactgagt cctgggggag ggagcagctg
     4201 tgccaaggga cggggaggaa cggtggcatc ctcgatcaca gcctgggttc accgtgctca
     4261 cccggggccc tcagaaaggc tgcccctggg agagcgccct ggggcaccgg gcaagggcct
     4321 tcacctgccg tgggcgcgcc agtgacttgc gagccccttt gccctccgag gccagtgtgg
     4381 ccgcttccct tgtatgtagt tcttctctag taagaggcca gatagttaag ctcatctctt
     4441 cccagggaga gcgagccctg ctcaggcctc cagtgttgcc tggccgctgc cagactgagg
     4501 gcccacccag gggacacaca ggagtgtggc ctggggaggc tttgttcttt aactgtgcct
     4561 tttcttagga tctgggcagg aacgaggccc ataatttatt gctttctacc ctgtggtatg
     4621 ttggtgtgct cgcgcgtgtg tgtgtgagtg tgtgttctgt tgttgatttc cctcctggga
     4681 agaacgtcgt ggactctgtt caggtacttc tgtgggttgt cctgctggcc ccgtggttgt
     4741 cactaatgta cacacatttt gttatttgcc aatggtgtaa taaccactgc tgaccaacca
     4801 a
//
LOCUS       XM_032618716            4466 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X9, mRNA.
ACCESSION   XM_032618716
VERSION     XM_032618716.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4466
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4466
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             40..3837
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X7"
                     /protein_id="XP_032474607.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPMVLRGWGPRSAPRLVLDCPLPLPQCSSLMLIESTRESPCFTVTHYKHSKQQ
                     YNIQAKTVEEKRSWTHHIKRLILENHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKK
                     ASQDEAFTHVHQGRRQSEPGQLLYNRATLPSRQRGFTVPGLKGHRKSEPSRHLLRQHS
                     KKARAAGMKGKGRREPEDPKSCRRPSSRSPTTAEKCLSFESVSSLPEVEPDPESGTEQ
                     EVSAAMEGPRTEEMPSDTEAPEVLEMQLDTHQLLLGLDPPGDMVDFIVADSTEDPKVL
                     SSEDEEEEMGAAHEPESLLPPSVLDQASVIAERFVSSFSRRSSLALEDGKSSGFGTPR
                     LTSRSSSVVSLEDSEKGLARRGSTTDTLGSQLPPEADISMGVAAESDPSVNGTETQSP
                     GCPAEPDRPSCTKESKLSSRDRLLLDKIKSYYESAEHHDAGFSVRRRESLSFIPKGLV
                     RNSVSRINSLPRPDPEPVAPLGHKRQVGSRAASWALFDYPGPGQACAGDPAPITDAEF
                     RPSSEIVKIWEEVESTEGSPAKGPGQGQANSFDLHEPLFILEDRELGAITEESAAASP
                     ERASPTEPPSPAHLARELKELVKELSSGTQGELVTPLHPRILQLSHVMDSHVSERVKS
                     KVYQLARQYSLRIKSKSVTARPPQPWEKVALTTPHLQPEAGAPSAGRGKRKPVLSLFN
                     HEQPTAQEHSPPKSGSAREVSPRRFSFSPSATSPRTTSPGAWHIPRSPLSPLDTETFN
                     WPDVRELCSKYASQDEALQAKGSRPHNLPVNRSHSLPENMMQPQPPLSGKVGRCCSLN
                     ARRAPAGPGVVQPQPLAGSPPGAPGGGEALYVTADLTLEDSRRMVIMEKGPLSGPNAG
                     LEAASGRGPSSPAAQAGQGPEFQECAEYRPKEEGPRDLADPSQQGRVRSLREKFQALN
                     SMG"
     misc_feature    319..840
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    787..1290
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <2794..3777
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 aacctccctg gagcgccccc accaggcagc aatgcaagga tgcccgtctc tgcctcgctc
       61 caccaagatg gcagccagga gcggcccgtg agcctgacct ccaccacctc ctcgtcaggc
      121 tcctcccgtg acagccgcgg ggccatggag gagcccagcg gctccgaggc ttcggccgag
      181 aacggggccg gctccccgcg cggccggcgt ctccccaaca acaactccag cagctggctg
      241 agcgtgaggg gctccctgtc ccctttcaac agccgggcgt cggtggcgcc tgcgcacaag
      301 ctcagctacg tgggtcgagt agtgcgggaa atcgtggaaa cggagcgcac gtacgtgcag
      361 gacctgcgca gcatcgttga ggactacctc ttgaagatca ttgacacgcc tgggctgctg
      421 aacccggagc aagtcagtgc cctttttggg aacatagaaa gcatctatgc actgaacagc
      481 cagctactca gagacctgga cagctgcaat agtgacccgg tggctgtggc cagctgcttt
      541 gtggaaagga gccaagagtt tgatatctac acccagtatt gcaacaacta ccccaactca
      601 gtggctgccc tcaccgagtg catgcaggac aagcagcagg ccaagttctt tcgggaccgg
      661 caggagctgc tgcagcactc actgcccttg ggttcctacc tcctgaagcc agtccagcgc
      721 atcctcaagt accacctgct actccaggaa atcgccaaac attttgatga agaagaggac
      781 ggctttgagg tggtagagga tgccattgac accatgactt gcgtggcctg gtacatcaac
      841 gacatgaaga ggagacatga gcacgcagtc cggctccagg agattcagtc tctgctcatc
      901 aactggaagg ggccagacct gaccacctac ggggagctcg tcctggaggg cacgttccgc
      961 gtgcaccgtg tgcgcaacga gaagaccttt ttcctctttg acaaagcact gctcatcacc
     1021 aagaagcggg gagatcactt tgtctacaag ggtcacatcc cgatggtctt gaggggctgg
     1081 ggccccaggt cagctccccg cctcgtgctt gactgccctc tccctctgcc ccagtgctcc
     1141 tccctgatgc tgattgagag caccagagaa tccccgtgct tcaccgtcac acactacaag
     1201 cacagcaaac agcagtacaa catccaggcc aaaactgtgg aggagaaacg gagctggact
     1261 caccacatca agaggctcat cctggagaac caccatacca ccatccccca gaaggccaaa
     1321 gaagccatct tggaaatgga ttcctattat cccaatcggt accgccacag cccagagcgc
     1381 ctgaagaagg cctcccagga tgaggcgttc acccatgtgc accaggggcg ccggcagtct
     1441 gagcctggtc agctcctgta caaccgggca acactcccca gcaggcagcg aggcttcacg
     1501 gtgccaggcc ttaagggcca tagaaagtcg gagccatcca gacatctgct caggcaacac
     1561 agcaagaaag ccagagcagc aggaatgaag gggaaggggc gcagggagcc cgaagacccc
     1621 aagagctgcc gaaggcccag cagccgatct ccaaccaccg ctgagaagtg cctgagcttt
     1681 gagtctgtgt cttccctgcc ggaggttgag ccagaccctg agtctgggac agagcaggag
     1741 gtgtctgctg ccatggaagg tcccaggacc gaggagatgc cctcagacac agaggctcca
     1801 gaagtcctag aaatgcagct tgacacccac cagctgctgc tgggactgga ccccccgggt
     1861 gacatggtgg acttcatcgt ggccgacagc accgaggacc ctaaggtcct gagcagtgag
     1921 gacgaggagg aggagatggg ggccgcccac gagcccgaga gcctcctgcc tccctctgtg
     1981 ctggaccagg ccagcgtcat tgccgagcgg ttcgtcagca gcttctctcg gcggagcagc
     2041 ctggcgctgg aggacggcaa gtccagcggc ttcgggaccc cgaggctgac cagccggagc
     2101 agcagtgtgg tcagcctaga ggacagtgag aagggcctgg cccgacgtgg gagcaccaca
     2161 gacaccctgg gctctcagct ccctccagaa gcggacatca gtatgggggt ggccgcagag
     2221 agcgaccctt ctgtcaacgg gacagagacc cagagcccag gctgcccagc ggagccagac
     2281 aggccttcct gcacgaagga atcgaagctt tcttcccgag accggctgtt gttggacaaa
     2341 atcaagagct actatgaaag tgcagagcac cacgatgcag gcttcagtgt ccggcgccgg
     2401 gagagcctct ccttcatccc caaaggattg gtgagaaact cagtctccag aatcaacagc
     2461 cttcccaggc cagacccgga gccagtggct ccgctggggc ataagagaca ggtgggttcg
     2521 cgggcagcct cgtgggccct ctttgactac ccaggaccag gccaggcttg tgctggggac
     2581 ccagctccca tcacagatgc tgagttccgc ccgtcttcgg aaattgtgaa gatctgggag
     2641 gaagtggagt ctactgaggg cagccctgcg aagggaccag gccaaggcca ggccaatagc
     2701 tttgacctgc acgagcccct cttcatcctg gaggaccgtg agctgggggc catcactgag
     2761 gagtcggctg ctgcctcgcc agagcgtgcc tcccccactg agccccccag cccggcccac
     2821 ctggcccggg agctgaagga gctggtgaag gagctgagca gcggcaccca gggggagctg
     2881 gtgaccccgc tacacccccg catcctgcag ctctcccacg tgatggacag ccacgtgagc
     2941 gagcgagtca agagcaaggt ctaccagctg gctcgccagt acagcctccg gatcaagagc
     3001 aagtcggtga cggccaggcc accgcagccg tgggaaaagg tggctcttac caccccccac
     3061 ctacagccgg aggctggagc accatctgct ggcagaggta agaggaaacc agtgctgtct
     3121 ctcttcaacc acgagcagcc cacggcccag gaacacagcc cgcccaagtc cggctctgcc
     3181 agggaggtat ctccgcggcg tttttccttc agcccctcgg ccaccagccc gaggaccacc
     3241 tcgcctgggg cctggcacat cccccgaagc cccctcagcc ccttggacac cgagactttc
     3301 aactggcccg acgtgcgaga gctctgctcc aaatacgcct cccaggacga ggcgctccag
     3361 gccaagggca gccggccgca caacctgccc gtcaaccgga gccactcgct gccagagaac
     3421 atgatgcagc cgcagccgcc cctgtcgggg aaggtgggcc gctgctgcag cctgaacgcc
     3481 aggagggctc cggcaggccc aggggtcgtc cagcctcagc ctctggcggg gtcacctcca
     3541 ggcgcgccgg gtggagggga ggccctgtac gtcaccgcag acctcacact ggaggacagc
     3601 cggcggatgg tcatcatgga gaaggggccc ctgtccggcc ccaacgcggg actggaggca
     3661 gccagcgggc ggggaccgag ctcaccagca gcccaggcgg ggcagggccc ggagttccag
     3721 gagtgtgcag agtatcggcc taaagaagag ggtcccaggg acctggcaga cccaagccag
     3781 cagggcagag tgaggagcct gcgggagaaa ttccaggcct tgaactccat gggttgacac
     3841 tgagtcctgg gggagggagc agctgtgcca agggacgggg aggaacggtg gcatcctcga
     3901 tcacagcctg ggttcaccgt gctcacccgg ggccctcaga aaggctgccc ctgggagagc
     3961 gccctggggc accgggcaag ggccttcacc tgccgtgggc gcgccagtga cttgcgagcc
     4021 cctttgccct ccgaggccag tgtggccgct tcccttgtat gtagttcttc tctagtaaga
     4081 ggccagatag ttaagctcat ctcttcccag ggagagcgag ccctgctcag gcctccagtg
     4141 ttgcctggcc gctgccagac tgagggccca cccaggggac acacaggagt gtggcctggg
     4201 gaggctttgt tctttaactg tgccttttct taggatctgg gcaggaacga ggcccataat
     4261 ttattgcttt ctaccctgtg gtatgttggt gtgctcgcgc gtgtgtgtgt gagtgtgtgt
     4321 tctgttgttg atttccctcc tgggaagaac gtcgtggact ctgttcaggt acttctgtgg
     4381 gttgtcctgc tggccccgtg gttgtcacta atgtacacac attttgttat ttgccaatgg
     4441 tgtaataacc actgctgacc aaccaa
//
LOCUS       XM_032618723            4376 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X10, mRNA.
ACCESSION   XM_032618723
VERSION     XM_032618723.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4376
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4376
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             40..3747
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X8"
                     /protein_id="XP_032474614.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPMVLRGWGPRSAPRLVLDCPLPLPQCSSLMLIESTRESPCFTVTHYKHSKQQ
                     YNIQAKTVEEKRSWTHHIKRLILENHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKK
                     ASQDEAFTHVHQGRRQSEPSRHLLRQHSKKARAAGMKGKGRREPEDPKSCRRPSSRSP
                     TTAEKCLSFESVSSLPEVEPDPESGTEQEVSAAMEGPRTEEMPSDTEAPEVLEMQLDT
                     HQLLLGLDPPGDMVDFIVADSTEDPKVLSSEDEEEEMGAAHEPESLLPPSVLDQASVI
                     AERFVSSFSRRSSLALEDGKSSGFGTPRLTSRSSSVVSLEDSEKGLARRGSTTDTLGS
                     QLPPEADISMGVAAESDPSVNGTETQSPGCPAEPDRPSCTKESKLSSRDRLLLDKIKS
                     YYESAEHHDAGFSVRRRESLSFIPKGLVRNSVSRINSLPRPDPEPVAPLGHKRQVGSR
                     AASWALFDYPGPGQACAGDPAPITDAEFRPSSEIVKIWEEVESTEGSPAKGPGQGQAN
                     SFDLHEPLFILEDRELGAITEESAAASPERASPTEPPSPAHLARELKELVKELSSGTQ
                     GELVTPLHPRILQLSHVMDSHVSERVKSKVYQLARQYSLRIKSKSVTARPPQPWEKVA
                     LTTPHLQPEAGAPSAGRGKRKPVLSLFNHEQPTAQEHSPPKSGSAREVSPRRFSFSPS
                     ATSPRTTSPGAWHIPRSPLSPLDTETFNWPDVRELCSKYASQDEALQAKGSRPHNLPV
                     NRSHSLPENMMQPQPPLSGKVGRCCSLNARRAPAGPGVVQPQPLAGSPPGAPGGGEAL
                     YVTADLTLEDSRRMVIMEKGPLSGPNAGLEAASGRGPSSPAAQAGQGPEFQECAEYRP
                     KEEGPRDLADPSQQGRVRSLREKFQALNSMG"
     misc_feature    319..840
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    787..1290
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <2704..3687
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 aacctccctg gagcgccccc accaggcagc aatgcaagga tgcccgtctc tgcctcgctc
       61 caccaagatg gcagccagga gcggcccgtg agcctgacct ccaccacctc ctcgtcaggc
      121 tcctcccgtg acagccgcgg ggccatggag gagcccagcg gctccgaggc ttcggccgag
      181 aacggggccg gctccccgcg cggccggcgt ctccccaaca acaactccag cagctggctg
      241 agcgtgaggg gctccctgtc ccctttcaac agccgggcgt cggtggcgcc tgcgcacaag
      301 ctcagctacg tgggtcgagt agtgcgggaa atcgtggaaa cggagcgcac gtacgtgcag
      361 gacctgcgca gcatcgttga ggactacctc ttgaagatca ttgacacgcc tgggctgctg
      421 aacccggagc aagtcagtgc cctttttggg aacatagaaa gcatctatgc actgaacagc
      481 cagctactca gagacctgga cagctgcaat agtgacccgg tggctgtggc cagctgcttt
      541 gtggaaagga gccaagagtt tgatatctac acccagtatt gcaacaacta ccccaactca
      601 gtggctgccc tcaccgagtg catgcaggac aagcagcagg ccaagttctt tcgggaccgg
      661 caggagctgc tgcagcactc actgcccttg ggttcctacc tcctgaagcc agtccagcgc
      721 atcctcaagt accacctgct actccaggaa atcgccaaac attttgatga agaagaggac
      781 ggctttgagg tggtagagga tgccattgac accatgactt gcgtggcctg gtacatcaac
      841 gacatgaaga ggagacatga gcacgcagtc cggctccagg agattcagtc tctgctcatc
      901 aactggaagg ggccagacct gaccacctac ggggagctcg tcctggaggg cacgttccgc
      961 gtgcaccgtg tgcgcaacga gaagaccttt ttcctctttg acaaagcact gctcatcacc
     1021 aagaagcggg gagatcactt tgtctacaag ggtcacatcc cgatggtctt gaggggctgg
     1081 ggccccaggt cagctccccg cctcgtgctt gactgccctc tccctctgcc ccagtgctcc
     1141 tccctgatgc tgattgagag caccagagaa tccccgtgct tcaccgtcac acactacaag
     1201 cacagcaaac agcagtacaa catccaggcc aaaactgtgg aggagaaacg gagctggact
     1261 caccacatca agaggctcat cctggagaac caccatacca ccatccccca gaaggccaaa
     1321 gaagccatct tggaaatgga ttcctattat cccaatcggt accgccacag cccagagcgc
     1381 ctgaagaagg cctcccagga tgaggcgttc acccatgtgc accaggggcg ccggcagtct
     1441 gagccatcca gacatctgct caggcaacac agcaagaaag ccagagcagc aggaatgaag
     1501 gggaaggggc gcagggagcc cgaagacccc aagagctgcc gaaggcccag cagccgatct
     1561 ccaaccaccg ctgagaagtg cctgagcttt gagtctgtgt cttccctgcc ggaggttgag
     1621 ccagaccctg agtctgggac agagcaggag gtgtctgctg ccatggaagg tcccaggacc
     1681 gaggagatgc cctcagacac agaggctcca gaagtcctag aaatgcagct tgacacccac
     1741 cagctgctgc tgggactgga ccccccgggt gacatggtgg acttcatcgt ggccgacagc
     1801 accgaggacc ctaaggtcct gagcagtgag gacgaggagg aggagatggg ggccgcccac
     1861 gagcccgaga gcctcctgcc tccctctgtg ctggaccagg ccagcgtcat tgccgagcgg
     1921 ttcgtcagca gcttctctcg gcggagcagc ctggcgctgg aggacggcaa gtccagcggc
     1981 ttcgggaccc cgaggctgac cagccggagc agcagtgtgg tcagcctaga ggacagtgag
     2041 aagggcctgg cccgacgtgg gagcaccaca gacaccctgg gctctcagct ccctccagaa
     2101 gcggacatca gtatgggggt ggccgcagag agcgaccctt ctgtcaacgg gacagagacc
     2161 cagagcccag gctgcccagc ggagccagac aggccttcct gcacgaagga atcgaagctt
     2221 tcttcccgag accggctgtt gttggacaaa atcaagagct actatgaaag tgcagagcac
     2281 cacgatgcag gcttcagtgt ccggcgccgg gagagcctct ccttcatccc caaaggattg
     2341 gtgagaaact cagtctccag aatcaacagc cttcccaggc cagacccgga gccagtggct
     2401 ccgctggggc ataagagaca ggtgggttcg cgggcagcct cgtgggccct ctttgactac
     2461 ccaggaccag gccaggcttg tgctggggac ccagctccca tcacagatgc tgagttccgc
     2521 ccgtcttcgg aaattgtgaa gatctgggag gaagtggagt ctactgaggg cagccctgcg
     2581 aagggaccag gccaaggcca ggccaatagc tttgacctgc acgagcccct cttcatcctg
     2641 gaggaccgtg agctgggggc catcactgag gagtcggctg ctgcctcgcc agagcgtgcc
     2701 tcccccactg agccccccag cccggcccac ctggcccggg agctgaagga gctggtgaag
     2761 gagctgagca gcggcaccca gggggagctg gtgaccccgc tacacccccg catcctgcag
     2821 ctctcccacg tgatggacag ccacgtgagc gagcgagtca agagcaaggt ctaccagctg
     2881 gctcgccagt acagcctccg gatcaagagc aagtcggtga cggccaggcc accgcagccg
     2941 tgggaaaagg tggctcttac caccccccac ctacagccgg aggctggagc accatctgct
     3001 ggcagaggta agaggaaacc agtgctgtct ctcttcaacc acgagcagcc cacggcccag
     3061 gaacacagcc cgcccaagtc cggctctgcc agggaggtat ctccgcggcg tttttccttc
     3121 agcccctcgg ccaccagccc gaggaccacc tcgcctgggg cctggcacat cccccgaagc
     3181 cccctcagcc ccttggacac cgagactttc aactggcccg acgtgcgaga gctctgctcc
     3241 aaatacgcct cccaggacga ggcgctccag gccaagggca gccggccgca caacctgccc
     3301 gtcaaccgga gccactcgct gccagagaac atgatgcagc cgcagccgcc cctgtcgggg
     3361 aaggtgggcc gctgctgcag cctgaacgcc aggagggctc cggcaggccc aggggtcgtc
     3421 cagcctcagc ctctggcggg gtcacctcca ggcgcgccgg gtggagggga ggccctgtac
     3481 gtcaccgcag acctcacact ggaggacagc cggcggatgg tcatcatgga gaaggggccc
     3541 ctgtccggcc ccaacgcggg actggaggca gccagcgggc ggggaccgag ctcaccagca
     3601 gcccaggcgg ggcagggccc ggagttccag gagtgtgcag agtatcggcc taaagaagag
     3661 ggtcccaggg acctggcaga cccaagccag cagggcagag tgaggagcct gcgggagaaa
     3721 ttccaggcct tgaactccat gggttgacac tgagtcctgg gggagggagc agctgtgcca
     3781 agggacgggg aggaacggtg gcatcctcga tcacagcctg ggttcaccgt gctcacccgg
     3841 ggccctcaga aaggctgccc ctgggagagc gccctggggc accgggcaag ggccttcacc
     3901 tgccgtgggc gcgccagtga cttgcgagcc cctttgccct ccgaggccag tgtggccgct
     3961 tcccttgtat gtagttcttc tctagtaaga ggccagatag ttaagctcat ctcttcccag
     4021 ggagagcgag ccctgctcag gcctccagtg ttgcctggcc gctgccagac tgagggccca
     4081 cccaggggac acacaggagt gtggcctggg gaggctttgt tctttaactg tgccttttct
     4141 taggatctgg gcaggaacga ggcccataat ttattgcttt ctaccctgtg gtatgttggt
     4201 gtgctcgcgc gtgtgtgtgt gagtgtgtgt tctgttgttg atttccctcc tgggaagaac
     4261 gtcgtggact ctgttcaggt acttctgtgg gttgtcctgc tggccccgtg gttgtcacta
     4321 atgtacacac attttgttat ttgccaatgg tgtaataacc actgctgacc aaccaa
//
LOCUS       XM_032618729            4304 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin homology and RhoGEF domain
            containing G3 (PLEKHG3), transcript variant X11, mRNA.
ACCESSION   XM_032618729
VERSION     XM_032618729.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4304
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4304
                     /gene="PLEKHG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746901"
     CDS             40..3675
                     /gene="PLEKHG3"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 3 isoform X9"
                     /protein_id="XP_032474620.1"
                     /db_xref="GeneID:116746901"
                     /translation="MPVSASLHQDGSQERPVSLTSTTSSSGSSRDSRGAMEEPSGSEA
                     SAENGAGSPRGRRLPNNNSSSWLSVRGSLSPFNSRASVAPAHKLSYVGRVVREIVETE
                     RTYVQDLRSIVEDYLLKIIDTPGLLNPEQVSALFGNIESIYALNSQLLRDLDSCNSDP
                     VAVASCFVERSQEFDIYTQYCNNYPNSVAALTECMQDKQQAKFFRDRQELLQHSLPLG
                     SYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVEDAIDTMTCVAWYINDMKRRHEHA
                     VRLQEIQSLLINWKGPDLTTYGELVLEGTFRVHRVRNEKTFFLFDKALLITKKRGDHF
                     VYKGHIPCSSLMLIESTRESPCFTVTHYKHSKQQYNIQAKTVEEKRSWTHHIKRLILE
                     NHHTTIPQKAKEAILEMDSYYPNRYRHSPERLKKASQDEAFTHVHQGRRQSEPSRHLL
                     RQHSKKARAAGMKGKGRREPEDPKSCRRPSSRSPTTAEKCLSFESVSSLPEVEPDPES
                     GTEQEVSAAMEGPRTEEMPSDTEAPEVLEMQLDTHQLLLGLDPPGDMVDFIVADSTED
                     PKVLSSEDEEEEMGAAHEPESLLPPSVLDQASVIAERFVSSFSRRSSLALEDGKSSGF
                     GTPRLTSRSSSVVSLEDSEKGLARRGSTTDTLGSQLPPEADISMGVAAESDPSVNGTE
                     TQSPGCPAEPDRPSCTKESKLSSRDRLLLDKIKSYYESAEHHDAGFSVRRRESLSFIP
                     KGLVRNSVSRINSLPRPDPEPVAPLGHKRQVGSRAASWALFDYPGPGQACAGDPAPIT
                     DAEFRPSSEIVKIWEEVESTEGSPAKGPGQGQANSFDLHEPLFILEDRELGAITEESA
                     AASPERASPTEPPSPAHLARELKELVKELSSGTQGELVTPLHPRILQLSHVMDSHVSE
                     RVKSKVYQLARQYSLRIKSKSVTARPPQPWEKVALTTPHLQPEAGAPSAGRGKRKPVL
                     SLFNHEQPTAQEHSPPKSGSAREVSPRRFSFSPSATSPRTTSPGAWHIPRSPLSPLDT
                     ETFNWPDVRELCSKYASQDEALQAKGSRPHNLPVNRSHSLPENMMQPQPPLSGKVGRC
                     CSLNARRAPAGPGVVQPQPLAGSPPGAPGGGEALYVTADLTLEDSRRMVIMEKGPLSG
                     PNAGLEAASGRGPSSPAAQAGQGPEFQECAEYRPKEEGPRDLADPSQQGRVRSLREKF
                     QALNSMG"
     misc_feature    319..840
                     /gene="PLEKHG3"
                     /note="RhoGEF domain; Region: RhoGEF; pfam00621"
                     /db_xref="CDD:459876"
     misc_feature    787..1218
                     /gene="PLEKHG3"
                     /note="Pleckstrin homology domain-containing family G
                     members 1, 2, and 3 pleckstrin homology (PH) domain;
                     Region: PH_PLEKHG1_G2_G3; cd13243"
                     /db_xref="CDD:270063"
     misc_feature    <2632..3615
                     /gene="PLEKHG3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 aacctccctg gagcgccccc accaggcagc aatgcaagga tgcccgtctc tgcctcgctc
       61 caccaagatg gcagccagga gcggcccgtg agcctgacct ccaccacctc ctcgtcaggc
      121 tcctcccgtg acagccgcgg ggccatggag gagcccagcg gctccgaggc ttcggccgag
      181 aacggggccg gctccccgcg cggccggcgt ctccccaaca acaactccag cagctggctg
      241 agcgtgaggg gctccctgtc ccctttcaac agccgggcgt cggtggcgcc tgcgcacaag
      301 ctcagctacg tgggtcgagt agtgcgggaa atcgtggaaa cggagcgcac gtacgtgcag
      361 gacctgcgca gcatcgttga ggactacctc ttgaagatca ttgacacgcc tgggctgctg
      421 aacccggagc aagtcagtgc cctttttggg aacatagaaa gcatctatgc actgaacagc
      481 cagctactca gagacctgga cagctgcaat agtgacccgg tggctgtggc cagctgcttt
      541 gtggaaagga gccaagagtt tgatatctac acccagtatt gcaacaacta ccccaactca
      601 gtggctgccc tcaccgagtg catgcaggac aagcagcagg ccaagttctt tcgggaccgg
      661 caggagctgc tgcagcactc actgcccttg ggttcctacc tcctgaagcc agtccagcgc
      721 atcctcaagt accacctgct actccaggaa atcgccaaac attttgatga agaagaggac
      781 ggctttgagg tggtagagga tgccattgac accatgactt gcgtggcctg gtacatcaac
      841 gacatgaaga ggagacatga gcacgcagtc cggctccagg agattcagtc tctgctcatc
      901 aactggaagg ggccagacct gaccacctac ggggagctcg tcctggaggg cacgttccgc
      961 gtgcaccgtg tgcgcaacga gaagaccttt ttcctctttg acaaagcact gctcatcacc
     1021 aagaagcggg gagatcactt tgtctacaag ggtcacatcc cgtgctcctc cctgatgctg
     1081 attgagagca ccagagaatc cccgtgcttc accgtcacac actacaagca cagcaaacag
     1141 cagtacaaca tccaggccaa aactgtggag gagaaacgga gctggactca ccacatcaag
     1201 aggctcatcc tggagaacca ccataccacc atcccccaga aggccaaaga agccatcttg
     1261 gaaatggatt cctattatcc caatcggtac cgccacagcc cagagcgcct gaagaaggcc
     1321 tcccaggatg aggcgttcac ccatgtgcac caggggcgcc ggcagtctga gccatccaga
     1381 catctgctca ggcaacacag caagaaagcc agagcagcag gaatgaaggg gaaggggcgc
     1441 agggagcccg aagaccccaa gagctgccga aggcccagca gccgatctcc aaccaccgct
     1501 gagaagtgcc tgagctttga gtctgtgtct tccctgccgg aggttgagcc agaccctgag
     1561 tctgggacag agcaggaggt gtctgctgcc atggaaggtc ccaggaccga ggagatgccc
     1621 tcagacacag aggctccaga agtcctagaa atgcagcttg acacccacca gctgctgctg
     1681 ggactggacc ccccgggtga catggtggac ttcatcgtgg ccgacagcac cgaggaccct
     1741 aaggtcctga gcagtgagga cgaggaggag gagatggggg ccgcccacga gcccgagagc
     1801 ctcctgcctc cctctgtgct ggaccaggcc agcgtcattg ccgagcggtt cgtcagcagc
     1861 ttctctcggc ggagcagcct ggcgctggag gacggcaagt ccagcggctt cgggaccccg
     1921 aggctgacca gccggagcag cagtgtggtc agcctagagg acagtgagaa gggcctggcc
     1981 cgacgtggga gcaccacaga caccctgggc tctcagctcc ctccagaagc ggacatcagt
     2041 atgggggtgg ccgcagagag cgacccttct gtcaacggga cagagaccca gagcccaggc
     2101 tgcccagcgg agccagacag gccttcctgc acgaaggaat cgaagctttc ttcccgagac
     2161 cggctgttgt tggacaaaat caagagctac tatgaaagtg cagagcacca cgatgcaggc
     2221 ttcagtgtcc ggcgccggga gagcctctcc ttcatcccca aaggattggt gagaaactca
     2281 gtctccagaa tcaacagcct tcccaggcca gacccggagc cagtggctcc gctggggcat
     2341 aagagacagg tgggttcgcg ggcagcctcg tgggccctct ttgactaccc aggaccaggc
     2401 caggcttgtg ctggggaccc agctcccatc acagatgctg agttccgccc gtcttcggaa
     2461 attgtgaaga tctgggagga agtggagtct actgagggca gccctgcgaa gggaccaggc
     2521 caaggccagg ccaatagctt tgacctgcac gagcccctct tcatcctgga ggaccgtgag
     2581 ctgggggcca tcactgagga gtcggctgct gcctcgccag agcgtgcctc ccccactgag
     2641 ccccccagcc cggcccacct ggcccgggag ctgaaggagc tggtgaagga gctgagcagc
     2701 ggcacccagg gggagctggt gaccccgcta cacccccgca tcctgcagct ctcccacgtg
     2761 atggacagcc acgtgagcga gcgagtcaag agcaaggtct accagctggc tcgccagtac
     2821 agcctccgga tcaagagcaa gtcggtgacg gccaggccac cgcagccgtg ggaaaaggtg
     2881 gctcttacca ccccccacct acagccggag gctggagcac catctgctgg cagaggtaag
     2941 aggaaaccag tgctgtctct cttcaaccac gagcagccca cggcccagga acacagcccg
     3001 cccaagtccg gctctgccag ggaggtatct ccgcggcgtt tttccttcag cccctcggcc
     3061 accagcccga ggaccacctc gcctggggcc tggcacatcc cccgaagccc cctcagcccc
     3121 ttggacaccg agactttcaa ctggcccgac gtgcgagagc tctgctccaa atacgcctcc
     3181 caggacgagg cgctccaggc caagggcagc cggccgcaca acctgcccgt caaccggagc
     3241 cactcgctgc cagagaacat gatgcagccg cagccgcccc tgtcggggaa ggtgggccgc
     3301 tgctgcagcc tgaacgccag gagggctccg gcaggcccag gggtcgtcca gcctcagcct
     3361 ctggcggggt cacctccagg cgcgccgggt ggaggggagg ccctgtacgt caccgcagac
     3421 ctcacactgg aggacagccg gcggatggtc atcatggaga aggggcccct gtccggcccc
     3481 aacgcgggac tggaggcagc cagcgggcgg ggaccgagct caccagcagc ccaggcgggg
     3541 cagggcccgg agttccagga gtgtgcagag tatcggccta aagaagaggg tcccagggac
     3601 ctggcagacc caagccagca gggcagagtg aggagcctgc gggagaaatt ccaggccttg
     3661 aactccatgg gttgacactg agtcctgggg gagggagcag ctgtgccaag ggacggggag
     3721 gaacggtggc atcctcgatc acagcctggg ttcaccgtgc tcacccgggg ccctcagaaa
     3781 ggctgcccct gggagagcgc cctggggcac cgggcaaggg ccttcacctg ccgtgggcgc
     3841 gccagtgact tgcgagcccc tttgccctcc gaggccagtg tggccgcttc ccttgtatgt
     3901 agttcttctc tagtaagagg ccagatagtt aagctcatct cttcccaggg agagcgagcc
     3961 ctgctcaggc ctccagtgtt gcctggccgc tgccagactg agggcccacc caggggacac
     4021 acaggagtgt ggcctgggga ggctttgttc tttaactgtg ccttttctta ggatctgggc
     4081 aggaacgagg cccataattt attgctttct accctgtggt atgttggtgt gctcgcgcgt
     4141 gtgtgtgtga gtgtgtgttc tgttgttgat ttccctcctg ggaagaacgt cgtggactct
     4201 gttcaggtac ttctgtgggt tgtcctgctg gccccgtggt tgtcactaat gtacacacat
     4261 tttgttattt gccaatggtg taataaccac tgctgaccaa ccaa
//
LOCUS       XR_004347934             465 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746969
            (LOC116746969), ncRNA.
ACCESSION   XR_004347934
VERSION     XR_004347934.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..465
                     /gene="LOC116746969"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746969"
     ncRNA           1..465
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746969"
                     /product="uncharacterized LOC116746969"
                     /db_xref="GeneID:116746969"
ORIGIN      
        1 cgctcctttc gtttccgggg tgggggctaa aggacagaaa aatgtctcct tacacgagcc
       61 tctcgcgctc cagccctcgg cctggagggt cgccctggga ggagcccacg cggccccggg
      121 cccctctctg ccgcgccgag tcctcacccc gcagggggct ggggcgggtg cccgggaggg
      181 caagggcttc aaaaccactc cgggcactgc cgctcggccc gctgcgcccg cagaggacgc
      241 ggggagaacc gacggacact caccgagcag cggccgcccg gctggatcca gaacgcacgg
      301 cgcgcgaagc cacccagata taaatccaaa cctccgagaa gctgacaaga aagagatgaa
      361 gaagccgata acttggaggg agtccaccac aagactgtta ggtggaaaaa gcaagaggca
      421 gaaacccgtg taaataaagg acccattttg gtaaaacgaa gagaa
//
LOCUS       XR_004347935            2836 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746974
            (LOC116746974), ncRNA.
ACCESSION   XR_004347935
VERSION     XR_004347935.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2836
                     /gene="LOC116746974"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746974"
     ncRNA           1..2836
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746974"
                     /product="uncharacterized LOC116746974"
                     /db_xref="GeneID:116746974"
ORIGIN      
        1 cagagctgat tttgttctct tagccttctg ttcagctgaa gttgagcagc ggtaatgagt
       61 catgctgtct tgtgaccagc caggcacttt tccaatcaga gagactgtta agatctctga
      121 caacagaacc tgtcattgtt tgaagagtag atatcaacgg tgacctacct gtatgcttgg
      181 tgatccaggc ttctggcttc tagccagctt gtttgcccgg aggaaagaat tcattgaacg
      241 gccacagact acattccaga acgttagcca agcactttgc aacagggtac cattgggtca
      301 tagcaaggcc tgccaccact cctggcagag cgactccaaa tacctgccca tggtacagag
      361 gtctggttgc aggagacaac tctgctttga tctgctttcg tgtaagagtt catcggagca
      421 cgaggagata aaagttgtca aagctgagcc cagaaagagg ttggtgccgc cacacgtcgt
      481 cactcagaag agaagtaggg ttggggctca ggtaatgtgt gtgagctgcc tgtccaggtg
      541 ggccttctct ggattctcag gggcttatct gcagacagcc ttgaatggat ggtgactgag
      601 aacatcgtcc tggagcccag atgccctggt gcctgtattg ggggatgggg cctctaagga
      661 ggtggtaaag gttaaatgag gtcatcagag aggatccctc atccaatagg gttagagcct
      721 tcaggaggag acagcagaga gcttcacccc ccacccccca ccgccccgca ttttctgtct
      781 gtctgtctgt ctgtctgtct gtgtctctct cctccctgtg aggacacagt gagaaggcag
      841 ccgtctgcaa gcccggaaga gagctctcac cagcgcttgg ccatgactcc accctccaga
      901 accgtgagaa ataaagccct gttgttttag ctgcctggtc tgtaggactt ggttatgaca
      961 gcccgagctg acctgtacac agaggggcct ctccttctga ggggccagcc ctgctttccc
     1021 caactgccct ctgcttggtg gtactctggg ttttctcaca gcctgtgcgt tcctgcctcc
     1081 catctggatt agaagcttca tccttaggac tccagtaaca ggctgtatca tgatttgcac
     1141 ccctcgggca ctagccaaat acatttctca cactataagg tgtaatattt gctgattgat
     1201 tgactagtct gagagatgat tagccaagtt gtacctatat cttgaaatag tttgttttta
     1261 ctttggtttc agaattggca aagaaatatg gggataatta tgcacaaaat ttctggctac
     1321 ttggtgatat gagtgtgttg tttattttct cctggaatga tccagattca gagagttacc
     1381 tcagcactga cctttatctt gcatataaac ataaaatggg gcccaggact ccaaattcta
     1441 caaaactcac tgtaattttc tttgaatgga ggtcgtttta tcaataatat taaaatctca
     1501 ttaaattatc tgatcctaga ccagggtgct tcatactgtt ctctttcttt ataattattt
     1561 aatctctttt tagtagaaaa gaggaaaaat cctttgaacc agaaatgatt tctttctact
     1621 ctaacagtat tccttttttc actctgggtg aaataaactt aacagaaagg agctgaactc
     1681 tccactccag gccacatgat ttaatgtgat gcaggttttt caattaatgg caataccttg
     1741 gacctgatca gaaaatcaag ccacaagaac tgaagccgca aggggttaac acttgttcat
     1801 tgtttttatg gaaagactat gtatgtcaaa aaataatcca aaaggatttt tcatttgcgt
     1861 ttctaaccta aaatggcccc atgattaatt taacgtgctt gatgtgcgtc atggaattat
     1921 cagttacctt tctattgaat tgcaaaaatc agggacattt tgtttaatca acactaatgt
     1981 tcagaaatgt attatctgtg atgttatcag ttctatccga actttgcaaa ttttttaaaa
     2041 aatctgctct gccaccacgt cattaaatta tgacatctga gtgaaaaggc cacatcacaa
     2101 gctagtggcc ctgtgattcg cctgaacccc accgactgat gccattggct ccatcccaga
     2161 agcaaaggtg agggaagcaa tgacaattat ctcagtgatt ttggccactg tcttcttcct
     2221 cagcaacaca aaggtggcac aggcgaaatg agagagacag ttgatgctgt aaaagttttg
     2281 ctcaggctgt tggatttatt tagataattg cttaaaaaac ttctgccacg ttgatttcat
     2341 tcttctgaaa tgactctgtg tcttaataca ttcaggatta cattcagctg caagttacag
     2401 agagtacaat taagagaggt atttcacatt gagggtatat ttaactcaca taaaaataca
     2461 tactgaggag gagggttcgg ggctaaagca gcttcatagt aacatcttca aggatccagt
     2521 gtcctcctct catttctgac cctcctccct gccctatagg gtttattctc atggttctag
     2581 gatgcctgct gcccttcgag gcagctccat gttcaggttt ttttttttaa ggggaagatg
     2641 tcttttcaac aggtataaac tttcaattat gcaagagaaa cgagttctag aatccgctgt
     2701 acaacactgg gcttatggtc aacaatgctg tatcgtacaa tcgcaaattt gttaagaggg
     2761 tagatctcgt ggtaagtgtt cttatcacaa gaaagaaaac aagcaagaaa gagagagaga
     2821 gaaggaagga aagaaa
//
LOCUS       XR_004347936            1253 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746976
            (LOC116746976), transcript variant X1, ncRNA.
ACCESSION   XR_004347936
VERSION     XR_004347936.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1253
                     /gene="LOC116746976"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746976"
     ncRNA           1..1253
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746976"
                     /product="uncharacterized LOC116746976, transcript variant
                     X1"
                     /db_xref="GeneID:116746976"
ORIGIN      
        1 tctaatgaat aaccccactt tggcgcgtgc aatgtaagca gaaagttctc tcccagcctc
       61 tttcgtctgt catgaatcta cgagacagcc gacataatat ctgggcgaca acggtgcgct
      121 aacagtgcat ttacagctga ctttactctt ctgtgcctct gtgtcctcca ttctaaaacg
      181 gagctcatct caaagttttt gcttaaaaga agtcctgatg caagcagtgt cgtctgggtg
      241 attattgtag gtcaatagtt acaggtgtaa tgttacttgg acctccatct attggccggc
      301 agtatggctt ggaaaccttc aacacacaat taagtgtctg gcttctttat tttaatggga
      361 tcttaacatg ttgaggaagg caaatgccct tgaaaaggcg tcttaaaagt atgattcaca
      421 gactcgggaa gaattacagg atgcagacag cctcgagtgt ggtgcctccc ccgagaggag
      481 ttcacatttc cttcctctta atctgagtga accattaaaa agttactcag ttccctggag
      541 gcccttccca aggaatctcc taaaaggaaa taccctgcac tggaaagggc ctgtgttggt
      601 tgctctgcat atgcaaccct atttaattct caccaattcc tgaagctgaa actcagagaa
      661 agtagagttt tctgaagatt acacagctga gaaatatggg aaaatggatt cagactcaga
      721 tctgcctcgt tctgaagctt actttctttt caatgcactg aactgtatca aggatgtttt
      781 ctggaaggca gactgatggg tgcaagagtg aagaggtatg aataaacact agctacagga
      841 tgacagagat tccttcctgg aaaccgtggt tgggatgaag caataaatac caaaaaaata
      901 ttttaaaaaa tttttttcta ggaggagttg caagatgaaa ttccatgtgc ttgacaagca
      961 tttatcaaac ctgaatttat ttcctgattg caaaagaatt ccatgttact ggtagaatta
     1021 ggaaactgta taggaatcac cagttacaca gtcagacaga gctaactact gttaatgttt
     1081 ttctaatctc tttatctttt tcttcaaata tatacatata tatagtgttt atctaattaa
     1141 aattatgctt ttcatatgtt tgtaatctga tgtctgagtt aataacatat cacaacattt
     1201 tatctcatgt tctctttgta aacatatttt gaataaatat agaatattcc ata
//
LOCUS       XR_004347937            1041 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746976
            (LOC116746976), transcript variant X2, ncRNA.
ACCESSION   XR_004347937
VERSION     XR_004347937.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1041
                     /gene="LOC116746976"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116746976"
     ncRNA           1..1041
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746976"
                     /product="uncharacterized LOC116746976, transcript variant
                     X2"
                     /db_xref="GeneID:116746976"
ORIGIN      
        1 tctaatgaat aaccccactt tggcgcgtgc aatgtaagca gaaagttctc tcccagcctc
       61 tttcgtctgt catgaatcta cgagacagcc gacataatat ctgggcgaca acggtgcgct
      121 aacagtgcat ttacagctga ctttactctt ctgtgcctct gtgtcctcca ttctaaaacg
      181 gagctcatct caaagttttt gcttaaaaga agtcctgatg caagcagtgt cgtctgggtg
      241 attattgtag gtcaatagtt acaggtgtaa tgttacttgg acctccatct attggccggc
      301 agtatggctt ggaaaccttc aacacacaat taagtgtctg gcttctttat tttaatggga
      361 tcttaacatg ttgagggcct gtgttggttg ctctgcatat gcaaccctat ttaattctca
      421 ccaattcctg aagctgaaac tcagagaaag tagagttttc tgaagattac acagctgaga
      481 aatatgggaa aatggattca gactcagatc tgcctcgttc tgaagcttac tttcttttca
      541 atgcactgaa ctgtatcaag gatgttttct ggaaggcaga ctgatgggtg caagagtgaa
      601 gaggtatgaa taaacactag ctacaggatg acagagattc cttcctggaa accgtggttg
      661 ggatgaagca ataaatacca aaaaaatatt ttaaaaaatt tttttctagg aggagttgca
      721 agatgaaatt ccatgtgctt gacaagcatt tatcaaacct gaatttattt cctgattgca
      781 aaagaattcc atgttactgg tagaattagg aaactgtata ggaatcacca gttacacagt
      841 cagacagagc taactactgt taatgttttt ctaatctctt tatctttttc ttcaaatata
      901 tacatatata tagtgtttat ctaattaaaa ttatgctttt catatgtttg taatctgatg
      961 tctgagttaa taacatatca caacatttta tctcatgttc tctttgtaaa catattttga
     1021 ataaatatag aatattccat a
//
LOCUS       XM_032618771            2089 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NADP dependent oxidoreductase domain
            containing 1 (NOXRED1), mRNA.
ACCESSION   XM_032618771
VERSION     XM_032618771.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2089
                     /gene="NOXRED1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 84% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116746980"
     CDS             941..2089
                     /gene="NOXRED1"
                     /codon_start=1
                     /product="NADP-dependent oxidoreductase domain-containing
                     protein 1"
                     /protein_id="XP_032474662.1"
                     /db_xref="GeneID:116746980"
                     /translation="MCYNATSSRSPFLRMRDAGLEMDMLEDLETLQFEYGIQEEDRSW
                     LYLLGRSHGLMTKACAHAAFFCKLLHNLRKSLQKKQTSRCRLAGLREDTPDDDALKVG
                     IIGGGHLGKQLAHTLLQLVPIPADSLRISTRRPEALDEFKKLGIQCFYHNSSLVEWAN
                     VIFLCCLPSQLSNICVEIQTSLGKACTVYSFVAAVPLPRLKLLLNHTNVLRPQYQCVE
                     DLASIWGANKEITAALQDPVILQATCPYSPAGGIILNIKWLEGVFYAAINVCTEKDMP
                     HSQVLHLLNELFLSKRFEACEKDRVSFQKFQAQDFVSKAYAKNLSRKRPFPWFDLTAV
                     QLKETPFSQYLSHSTTFQDNLTHLYCDSFGITLTKEQEPEVSTGFSSQ"
     misc_feature    1238..>1573
                     /gene="NOXRED1"
                     /note="Pyrroline-5-carboxylate reductase [Amino acid
                     transport and metabolism]; Region: ProC; COG0345"
                     /db_xref="CDD:440114"
ORIGIN      
        1 aagccctgga gacacttttt gtgcaacagc tggatggagc tcctggcatc tagtggatag
       61 aggccaggga tgctattaag gatcctacaa tgcacaggca gctccctgca ccaaagaatt
      121 atccggcccc aaatgtcagt agtgccagtg tggagaaagc ctgctctaag gggatcagat
      181 tccatctttt gctcctgtac tttgtaacgg cctttgcaat tccaggtaac ctcatatttg
      241 gttcctttcc gaatcaaccc tcttgctatt gaagaaacag gagtttaatt cgctgaattg
      301 tgctgaagtt attgactgat cttcaaataa acagtggtga cctaactagt gtatgagggt
      361 tcatttagag aagcagagcc actaggatta tatagtctgc cagtctgtcc acctgtctaa
      421 tctacatgtg ggattcatta cagggctttg accttgctca agtgtggcag ccggtacagt
      481 ctctggaagg ttatcttcat gtctggtggt agagctagaa atccataggg caggcagtgg
      541 ggaagggaag atggataaaa agtgagggga gggggagcca ggatgagctg gagcccatga
      601 ggatggactg gaacccctgc cagttctcac cgcccccaac ctgaggaagg ggaagctcac
      661 tggtggcctt tgtcacacag ctgaacacac ccctggccca ggagttgaga agctacagga
      721 ggatcccagg gaaggtatag cagttgcggg ctcaactgct gccccacagc aacagcgctg
      781 cccgcagaca gtgaaagtgc ctgcccagcc ttgcaagtac aaacggctgc tgcacttcca
      841 cctccagatc cgcaggaaac ctctcctgtg gtggcacacc ctaactggaa acagacaggg
      901 aagggaatgc tggaaaatgt agttcagcct agccaactcg atgtgttaca acgccacaag
      961 cagcagatcc ccatttttga gaatgcgaga tgctggtttg gagatggaca tgctagagga
     1021 ccttgagaca ctgcagtttg agtatgggat tcaagaggaa gaccgcagct ggctgtattt
     1081 gctgggccgt tctcatgggc tgatgaccaa ggcctgtgcc catgcagcct tcttctgcaa
     1141 gctactccat aatttgagaa aatcattaca gaagaagcaa acttctagat gtcgcttggc
     1201 tggattgcgt gaagacactc ctgatgacga cgcgttaaag gtgggcatca ttggaggcgg
     1261 ccaccttggg aagcagctgg ctcatacact gcttcagctt gtccccatcc cagctgacag
     1321 cctgaggatc tccactcgga ggccagaggc cctggatgaa ttcaagaaac tgggaatcca
     1381 gtgcttttac cataactctt ctctggtgga gtgggccaac gtgatattcc tctgctgcct
     1441 gccatctcag ctgtctaata tctgtgtaga aattcaaacc agccttggaa aagcctgcac
     1501 tgtgtacagc tttgtggctg ctgtcccact acccaggttg aaactcctac tgaaccacac
     1561 caatgtcttg cggcctcagt atcagtgtgt tgaagatctt gccagcatct ggggggccaa
     1621 taaggaaatc acagctgctc tccaagaccc tgtgattctt caggctacct gtccctacag
     1681 tcctgctggg ggaataatcc tcaatatcaa gtggttggag ggagtgttct atgcagccat
     1741 aaatgtctgc acagaaaagg acatgcccca ctcacaagtg ctgcaccttc tgaatgaact
     1801 gttcctctcc aagcgctttg aagcctgtga gaaagataga gtgtctttcc aaaaatttca
     1861 agcacaagat tttgtcagca aagcctatgc caagaacctg tctcggaaaa ggcctttccc
     1921 ctggtttgat ctgactgctg tgcaactcaa ggaaactccc tttagccagt atctctcaca
     1981 cagcactact tttcaggaca accttaccca cctatactgt gattcatttg gtatcaccct
     2041 aaccaaagaa caagagccag aggtttccac aggtttttca tcccaataa
//
LOCUS       XR_004347942            1784 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746985
            (LOC116746985), transcript variant X1, ncRNA.
ACCESSION   XR_004347942
VERSION     XR_004347942.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1784
                     /gene="LOC116746985"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 71% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746985"
     ncRNA           1..1784
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746985"
                     /product="uncharacterized LOC116746985, transcript variant
                     X1"
                     /db_xref="GeneID:116746985"
ORIGIN      
        1 tctggctcgg gctttcaatg actgaacatc tttttattct ttcaggagga tattgacgta
       61 tctgctcagt aaattaacat cagctgactt tttgggcgct tccaagtcct cttgccgata
      121 gaaaaaaggg agaggaccag agaatcagag gaaagggtag gggagccatc tcaacattta
      181 tcaagacttt gcttagaaca caagcctcca taaagactat tgattacttt cctgtatatc
      241 gtttgctgtg cctagccctg ggcctggcac atagtacacg gcctctcctc gtgcttattt
      301 actactagaa gcagagaagg attgaatcaa accctaaaga tggtccctcc attacccaga
      361 ctcacttaat gcgaagcaga gattctcaga tgcatatgga gaaatcttcc agaactgagg
      421 cccccgtcag caaattgcac ctgtggtgca gtgagtggca caggagtttg cacgtttttc
      481 tgtaacagac ctgagagtag aggcaggtga tgtgatccga ggtgcaagct cagtcctgcc
      541 tcccaaccag gagctcagaa tgtgaaagta tttggagaca ggggtcttca caagggtaat
      601 tacatgaaaa tgaagtccct aggaccctaa tcccatgtga ctggtgtcct taaaagaaga
      661 gttgattagg acgcagacgc acacggaggg aagaccacct gaggacacag ggagaagaca
      721 gcatctccaa gccaaggagg gaggcctcca aagaaaccat tcctgccgac accctgacat
      781 tggacttcca gcctccgaac ggtgagaaaa taaattctgt tgtttaagcc tccagccctt
      841 ggtcctctgt gatggctgcc cacgtgaact gaccacaggt ccttaactgg aatatcagtg
      901 tcaccgttgt tcatggtctg aatctccacc ctgaggtcct taccatctaa gcgcgctgct
      961 gagagagctc gtctgagcag gacacggccc cggccccctt cccactcctg gagcccctca
     1021 tcttcccagg ggccctgctc tcctgcttcc caggactgtc tctcccaggt gatggctctc
     1081 gacgacatct gcccttcaat gaggtggatt taaaactctc caaataccaa caggagactg
     1141 tgttcgagcc tgctccactg ggatcaccaa catgagggtc tcttagggtg gggttttttt
     1201 tttaatgttt aactttattt atttattctt gactttgaaa atgtttgctg tggtaagaac
     1261 acttaacatg agatctaccc acttaacaga attttgtttt tgtttttgat tttgtttctt
     1321 tggctgcacc gcacggcttg tgggatctta gttccctgac cagggattga actcgggccc
     1381 cggcagtgaa aactctgagt cctaaccact ggaccaccag ggaattccca gcaaaatttt
     1441 aagtctataa tccatcattg ttttttttaa tttattttac tttttattga cgtagagttg
     1501 atttacaatg ttgtgttact ttctgctgta caacaaagtg cttcagttat agatatatat
     1561 tcttttccat catggtttgt tataggatat tggatatagt tccctgtgct ctacagtagg
     1621 tccttgttgt tgtttatcta tttttatcta tagtagtttg tacctgttga tctcaaactc
     1681 ctaatttact cctccaccat ccccctcccc ctcggcaacc acaagtctgt tctctatgtc
     1741 tgtgagtctg tctctgtttc gtaaataaag tcattggtgt cgat
//
LOCUS       XR_004347943            1248 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746985
            (LOC116746985), transcript variant X2, ncRNA.
ACCESSION   XR_004347943
VERSION     XR_004347943.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1248
                     /gene="LOC116746985"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746985"
     ncRNA           1..1248
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746985"
                     /product="uncharacterized LOC116746985, transcript variant
                     X2"
                     /db_xref="GeneID:116746985"
ORIGIN      
        1 tcagcggcca caggggtggc tatctggact tggatttgtc tccctccagg acccctctga
       61 caccattgcc tgagcttttt gtggtgaagg ttgtcttcag caccagcggt tctggggacc
      121 tttaatgttc tctgtccttc ctgctgcctc tgacctttca cctaggactt tgcttagaac
      181 acaagcctcc ataaagacta ttgattactt tcctgtatat cgtttgctgt gcctagccct
      241 gggcctggca catagtacac ggcctctcct cgtgcttatt tactactaga agcagagaag
      301 gattgaatca aaccctaaag atggtccctc cattacccag actcacttaa tgcgaagcag
      361 agattctcag atgcatatgg agaaatcttc cagaactgag gcccccgtca gcaaattgca
      421 cctgtggtgc agtgagtggc acaggagttt gcacgttttt ctgtaacaga cctgagagta
      481 gaggcaggtg atgtgatccg aggtgcaagc tcagtcctgc ctcccaacca ggagctcaga
      541 atgtgaaagt atttggagac aggggtcttc acaagggtaa ttacatgaaa atgaagtccc
      601 taggacccta atcccatgtg actggtgtcc ttaaaagaag agttgattag gacgcagacg
      661 cacacggagg gaagaccacc tgaggacaca gggagaagac agcatctcca agccaaggag
      721 ggaggcctcc aaagaaacca ttcctgccga caccctgaca ttggacttcc agcctccgaa
      781 cggtgagaaa ataaattctg ttgtttaagc ctccagccct tggtcctctg tgatggctgc
      841 ccacgtgaac tgaccacagg tccttaactg gaatatcagt gtcaccgttg ttcatggtct
      901 gaatctccac cctgaggtcc ttaccatcta agcgcgctgc tgagagagct cgtctgagca
      961 ggacacggcc ccggccccct tcccactcct ggagcccctc atcttcccag gggccctgct
     1021 ctcctgcttc ccaggactgt ctctcccagg tgatggctct cgacgacatc tgcccttcaa
     1081 tgaggtggat ttaaaactct ccaaatacca acaggagact gtgttcgagc ctgctccact
     1141 gggatcacca acatgagggt ctcttagggt ggggtttttt ttttaatgtt taactttatt
     1201 tatttattct tgactttgaa aatgtttgct gtggtaagaa cacttaac
//
LOCUS       XR_004347944            1986 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746990
            (LOC116746990), transcript variant X1, ncRNA.
ACCESSION   XR_004347944
VERSION     XR_004347944.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1986
                     /gene="LOC116746990"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746990"
     ncRNA           1..1986
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746990"
                     /product="uncharacterized LOC116746990, transcript variant
                     X1"
                     /db_xref="GeneID:116746990"
ORIGIN      
        1 acaagtccta gctgtcaaca actccctgtt ttcctggagt tccccaggag ccaagaatgt
       61 tttgtttctg aagcctggta cctggagagc taaaataaca atcttgttaa tgagaagaca
      121 atgagactaa ctgctgtttt gcagtgtttc cacgggccat accttttaat tgccgagtgt
      181 tggcaattta acagactgta atgagtacac tgtccctctt tttttttgca cacagcccgt
      241 tgagctcggt cgaaacagga gtttgttttg tgtacggagc cgggaagact tattaaaagc
      301 tgactgaagc gtttggaatg agtttatttt gactggcgag cagctgcagc gactcaccct
      361 ccttctttga aaatcttcag cttcgagggt ctgggtttcg aagagccagt gcagtcggtt
      421 tcctgacatc catttgcaca gtccctttat accttcagta tgagcctgtt tcagtttcct
      481 gcacagtaaa agccaaagac agattcttgc tattgaatcc aacacttcac aaatccaaag
      541 ccagaatctt tgggggaagc tgaccttccc tctgaccctc ttgcaccagc ccctcccttg
      601 ctgggcagtg cgcactcatc cccagatgca gagaagaaag gattctcccc catcgtgccc
      661 gaattcttga gttgacgcca agaaacagcc acctggagca gagccagttg tgatagagtt
      721 tcacgcatcg gccaagaaca gattctgccc aggaactcgc actcacacag ccctgtccaa
      781 gtggagtgaa cacagagcga gccctcacaa ggtgtaggaa gcaagagggt ggcactcggg
      841 ggccccagga agccctgtca tcaccccaac ccgaggctgc cagcaagccc gtgccagagg
      901 aagtgggcag tgctgccaga ggctgtgctg agaatgagtc tggctctgct cctctgggtc
      961 acacgtgagt gcacatccct aagccagaat ctccactgag taactgaggt gagtttgact
     1021 cttgctctgt tatgagttag gagatgaaag gcaagtgcaa acatttgttt attcaattca
     1081 ggaaacccta acaccctctc tgtcttggag agggttagca aaggtgtgtt accgcactcc
     1141 ttaatctcag gagtcacgcg gagggaagct agacacgtaa atggctgagc aggaagagat
     1201 gctaatggaa gcagaggttc cccgggtgga aacgatcttt gctgggactg ggagggttct
     1261 gctcagtcac aatcggagaa gtaggtctcc tttcactgca cctgcaggct ctggtcccaa
     1321 gcatgtccca ggggagggga cctttgtaga tttctggggt tatctttctt atttcaccac
     1381 tcagcaggct ctggccccct ccagtgctta tcacctggag ctgggctctc ggctgatttc
     1441 atgggacgga gccccgtgtt taagcttccg tctgaggatc ggacgctcca cctccttctg
     1501 gctgaggcac catgtgacat ctgcccccga ctccggttcc ttcctggctt ctcttgttgc
     1561 ctctccggcc tcttaaatcc tagtccctgt gcctcatagc ccctacacca ctgctgccaa
     1621 tgcccttggt cacatttctc cccacttgtc acagccctac ctcgtgcctc ttgctggcgc
     1681 tccatgaccc tggtcacgtg acctcggaaa tgtcactccc ctctgtcacc cccatctcct
     1741 ggtttcatac tctgcccgct tcatctcctg ctgttccctt catctgtcat tctccctggc
     1801 cccacccctc cccttattct agctctaatg ggagcatccg atgataggaa tcataagtgg
     1861 aaagcactca cttagaggat ttcatgcata aatgacactg ttttccttac ttactatgac
     1921 tgccatgcaa ttagttgccc tttaaccagt gagttctccc aaaacaatgt ctttaaaata
     1981 aaaatg
//
LOCUS       XR_004347945            1610 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116746990
            (LOC116746990), transcript variant X2, ncRNA.
ACCESSION   XR_004347945
VERSION     XR_004347945.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1610
                     /gene="LOC116746990"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116746990"
     ncRNA           1..1610
                     /ncRNA_class="lncRNA"
                     /gene="LOC116746990"
                     /product="uncharacterized LOC116746990, transcript variant
                     X2"
                     /db_xref="GeneID:116746990"
ORIGIN      
        1 acaagtccta gctgtcaaca actccctgtt ttcctggagt tccccaggag ccaagaatgt
       61 tttgtttctg aagcctggta cctggagagc taaaataaca atcttgttaa tgagaagaca
      121 atgagactaa ctgctgtttt gcagtgtttc cacgggccat accttttaat tgccgagtgt
      181 tggcaattta acagactgta atgagtacac tgtccctctt tttttttgca cacagcccgt
      241 tgagctcggt cgaaacagga gtttgttttg tgtacggagc cgggaagact tattaaaagc
      301 tgactgaagc gtttggaatg agtttatttt gactggcgag cagctgcagc gactcaccct
      361 ccttctttga aaatcttcag cttcgagggt ctgggtttcg aagagccagt gcagtcggtt
      421 tcctgacatc catttgcaca gtccctttat accttcagta tgagcctgtt tcagtttcct
      481 gcacagtaaa agccaaagac agattcttgc tattgaatcc aacacttcac aaatccaaag
      541 ccagaatctt tgggggaagc tgaccttccc tctgaccctc ttgcaccagc ccctcccttg
      601 ctgggcagtg cgcactcatc cccagatgca gagaagaaag gattctcccc catcgtgccc
      661 gaattcttga gttgacgcca agaaacagcc acctggagca gagccagttg tgatagagtt
      721 tcacgcatcg gccaagaaca gattctgccc aggaactcgc actcacacag ccctgtccaa
      781 gtggagtgaa cacagagcga gccctcacaa ggtgtaggaa gcaagagggt ggcactcggg
      841 ggccccagga agccctgtca tcaccccaac ccgaggctgc cagcaagccc gtgccagagg
      901 aagtgggcag tgctgccaga ggctgtgctg agaatgagtc tggctctgct cctctgggtc
      961 acacgtgagt gcacatccct aagccagaat ctccactgag taactgagca ggctctggcc
     1021 ccctccagtg cttatcacct ggagctgggc tctcggctga tttcatggga cggagccccg
     1081 tgtttaagct tccgtctgag gatcggacgc tccacctcct tctggctgag gcaccatgtg
     1141 acatctgccc ccgactccgg ttccttcctg gcttctcttg ttgcctctcc ggcctcttaa
     1201 atcctagtcc ctgtgcctca tagcccctac accactgctg ccaatgccct tggtcacatt
     1261 tctccccact tgtcacagcc ctacctcgtg cctcttgctg gcgctccatg accctggtca
     1321 cgtgacctcg gaaatgtcac tcccctctgt cacccccatc tcctggtttc atactctgcc
     1381 cgcttcatct cctgctgttc ccttcatctg tcattctccc tggccccacc cctcccctta
     1441 ttctagctct aatgggagca tccgatgata ggaatcataa gtggaaagca ctcacttaga
     1501 ggatttcatg cataaatgac actgttttcc ttacttacta tgactgccat gcaattagtt
     1561 gccctttaac cagtgagttc tcccaaaaca atgtctttaa aataaaaatg
//
LOCUS       XM_032618809            4422 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X1, mRNA.
ACCESSION   XM_032618809
VERSION     XM_032618809.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4422
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4422
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 26 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             57..1793
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X1"
                     /protein_id="XP_032474700.1"
                     /db_xref="GeneID:116746995"
                     /translation="MPNKNKKEKESPKAGKSGKSSKEGQDIIESEIPSRKNSLVAAPS
                     AVSSKLKVPAPQPVVKKDKRQNSSRFSASNNRELQKLPSLKDVPPADQEKLFIQKLRQ
                     CCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRT
                     LPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFV
                     LQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA
                     ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST
                     LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP
                     HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKL
                     FMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQYAVCSQASTMSL
                     PVAVETDGPLFEDVQMLRKTVNEEARQAQKDLKKDRPLVRRKSELPQDLHTKSALEAH
                     GRADELVPQDGR"
     misc_feature    318..1529
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 gagctgctgc tgcggggggc aggcggcggg agcggcggcg gtggtccgca ccagccatgc
       61 cgaataaaaa caagaaggag aaagaatcgc caaaagcagg gaaaagtgga aaaagttcaa
      121 aagaaggaca agacataata gaatcagaga ttcccagcag gaaaaacagc cttgttgctg
      181 ccccgtctgc agtatctagt aaactaaaag tgccagcccc tcagcccgta gtgaagaaag
      241 acaaacggca aaattcttcc aggtttagcg ccagcaataa tagagaactt caaaaactac
      301 catctttaaa agatgttcct cctgctgatc aagagaagct ttttatccag aagttacgtc
      361 agtgttgtgt cctctttgac tttgtttccg atccactaag tgacctaaag tggaaggaag
      421 taaaacgagc tgctttaagt gaaatggtag aatatatcac ccataatcgg aatgtgatca
      481 cagagcctat ttacccagaa gtagtccata tgtttgcagt taacatgttt cgaacattac
      541 caccttcctc caaccctacg ggagcagaat ttgacccaga ggaagacgag ccaacgttag
      601 aagcagcctg gcctcacctg cagcttgttt atgaattttt cttaagattt ttagagtctc
      661 cagatttcca acctaatata gcgaagaaat atattgatca gaagtttgta ttgcagcttt
      721 tagagctctt tgacagtgaa gatcctcgcg agagagattt tcttaaaact acccttcacc
      781 gaatctatgg aaaattctta ggcttaagag cttacatcag aaaacagata aataatatat
      841 tttatagatt tatttatgaa acagagcatc acaatggcat agcagaatta ctggaaatac
      901 tgggaagtat aattaatgga tttgccttac cactgaaaga agagcacaag attttcttat
      961 tgaaggtgtt attacctttg cacaaagtga agtctctgag cgtctaccat cctcagctgg
     1021 catactgtgt agtgcagttt ttagaaaagg acagcaccct cactgaaccg gtggtgatgg
     1081 cacttctcaa gtactggcca aagactcaca gcccaaaaga agtcatgttc ctaaatgaac
     1141 tagaagagat tctagacgtc attgaaccat cagagtttgt gaagatcatg gagcctctct
     1201 tccggcagtt agccaagtgt gtctccagtc cccactttca ggtggcagag cgagcgctgt
     1261 attactggaa taacgagtac atcatgagtc tcatcagcga caacgcagca aagattctgc
     1321 ccatcatgtt tccatccttg taccgcaact caaagaccca ctggaacaag acgatacatg
     1381 gcttgatata caacgcgctg aaactcttca tggagatgaa ccaaaaacta tttgatgact
     1441 gcacccagca gtttaaagca gagaaactga aagagaagct aaaaatgaaa gaacgagaag
     1501 aagcgtgggt taaaatagaa aacctagcca aagcgaaccc ccagtacgca gtgtgtagtc
     1561 aagcgagcac catgagcctt ccggtggcag tggagacaga tgggccttta tttgaagatg
     1621 tgcagatgct gagaaagaca gtgaacgaag aggctcgcca ggcacagaag gacctgaaga
     1681 aggaccggcc cctggtgcgc cgcaagtccg agctgcccca ggacctgcac accaagagtg
     1741 ccctggaggc ccacggccgt gctgacgagc tggtccccca ggacgggcgc tagccccgac
     1801 gccgtgcgcg cgccagccct gctccggtct gtagaaagta cacgctctgt gtgccataca
     1861 aatcagttac actcaagtca aagctttctc caaccccgtt ccgtaggcaa taacatcctt
     1921 ccgcctcagc tcgagactag gagttcaaac aatggtgacc acccagggcc acatgccgcc
     1981 catggtgtcc cctgcacggt cccaagtaag ctggttttcc aaaatcagag ctaaggaaag
     2041 caccctagtc atcatcttca cgttctcccc aaatggaatt tgcgatcatt taagataggt
     2101 ggtccaatga taatatcagt gtttttcaaa tcaaaggagc actttaaaaa agtattacct
     2161 actttttaag actttacaac ccttgagatt gtttccacgt gattgttaat gccagcagtt
     2221 tctttctggg gttttttggt ttgtttttgt tttttaatct catggaagtg gttccttgct
     2281 gtcatcgttc caacaccact caactgggaa agtgacacga cagcccccgg ccgctgcctc
     2341 ttcctaaggt actgctttac tttgaccaat accatgcgta ccacaccctg ctgcttctgt
     2401 gtatcgctaa agccatattt ccaagtctgc ggtccaggac caggatccgg gagtgggcac
     2461 gtaggagaaa tttgttttaa aaagagcttt ctcttgactg gaattggaat tttaaagtga
     2521 tgtgtctgtg ttttactctt tgcagaatga tttctctcta cttacacgtt gttgcccttg
     2581 aacaaggctc ttcaattaga taaaattata ttctctgaga attccacatt ttgtagaaaa
     2641 ttaggacgag atcattttga gtgaggccag ctctcgggcc tgatgcaggc caccgctgcc
     2701 tttgggcaaa agtagcagga acagcgccgt gggcagggca ggcacccccc tccccgcagt
     2761 gtggccctga gggcttcgtg gaggcggcgg cagcgatggc ttccaaggag tctctttctg
     2821 ttgaaaagag cgcacgtaat agatgcctcg taaggaaaat acagcgtctt gagttttcat
     2881 cggtcttcaa tgctgctaaa tatttcagac ttccttgcat gtattcagct ttttgttttt
     2941 gatggaacag cacgaggaga aaaatcttta aacttaatgc tttgttcttt attactctcc
     3001 gggtggccag tattttgact tacttatcct gcttgaaagc tatttgagat gcgtactgct
     3061 gctctaaacc agtgattcta gtttcttctg tctctggcat aagattctat aacttgatgt
     3121 taaatgtctt gatgcatcaa aggtaaaacg tggcttcttt caggatctgt ttttcagttg
     3181 aggtcttggg aatccactca gacgttgtga gaagcagacg tggttccctg tgcagctgtg
     3241 gtacgtgctg ccccttggtt tcacttaaat cctttgatga tgtttatttc cttgtttcct
     3301 gtaggaaaat catttggagg gaggggattt ctggcgttca aagcaagtgc tagattagaa
     3361 gctgccccag ctgaaagggg aggaaccctc tttgtgagca ggaagtatcc atccacttca
     3421 ccatgatgaa atttatcatt taaaaaaagt ttagatgcct tctccttttg agggaaaaag
     3481 ggtgcttttt attgtataaa gcagcgtctt atgtattttg ataaaccatt gtttgaactt
     3541 ccgtctttag ctgatagatt ctcagatata cttggtttgg atgttcgcag ttatgtttgt
     3601 gacagaggtt tctgggaagc ctctcctctt gccctaggga aaaagcagaa taccagtgtt
     3661 tgggtgatgt ggaaagctca acgtataaga acatcttttt gtctaggttt tacttctgct
     3721 ctttattgaa gacaaacatt caccaaaaag ggaggaaaaa aaaagttttg agagaaacta
     3781 attttctttg acaagagtat tatttaatat tttgggctat gaaagttttc ctagttagta
     3841 ctcagattcc ctgtgctaat tgtccaactg acatattatt acatagatac actgtttatt
     3901 ctgtaccaaa ctgatttcag aagtcctgca ttgaaaataa actggtgact gtttttcttc
     3961 agaaagttct gcgtttggca tcttcactct ttctgaagtg tatctgtaca tcagaaatgt
     4021 cactattccg agtgtctttt tagtgcagct ttagtatggc ttccttttaa tattgtacat
     4081 acattgtacc tttgttttat ggtaatgagt aataaaaatg tagacttcat attttgtaca
     4141 aaatgtccta tgtacagaat aaaaaaagtt catagaaaca gcaaaaatag gtaagtggca
     4201 caattatttt tctttagaaa atatctgtaa cttgatgctt tagtgaaatg ttaagtacct
     4261 acatattttt taacattttg taattcaaaa ctttttgttt tgacattgtt tatgaagaga
     4321 gacttcatac acttgccatt taatatgctc ttttatctaa ttttaaaaga aactctaaaa
     4381 atggtgtatt atatggacta aataaagaac atgtgaattt ta
//
LOCUS       XM_032618817            4302 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X2, mRNA.
ACCESSION   XM_032618817
VERSION     XM_032618817.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4302
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4302
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 26 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             54..1673
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X2"
                     /protein_id="XP_032474708.1"
                     /db_xref="GeneID:116746995"
                     /translation="MPNKNKKEKESPKAGKSGKSSKEGQDIIESEIPSRKNSLVAAPS
                     AVSSKLKVPAPQPVVKKDKRQNSSRFSASNNRELQKLPSLKDVPPADQEKLFIQKLRQ
                     CCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRT
                     LPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFV
                     LQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA
                     ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST
                     LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP
                     HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKL
                     FMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQAQKDLKKDRPLV
                     RRKSELPQDLHTKSALEAHGRADELVPQDGR"
     misc_feature    315..1526
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 ctgctgctgc ggggggcagg cggcgggagc ggcggcggtg gtccgcacca gccatgccga
       61 ataaaaacaa gaaggagaaa gaatcgccaa aagcagggaa aagtggaaaa agttcaaaag
      121 aaggacaaga cataatagaa tcagagattc ccagcaggaa aaacagcctt gttgctgccc
      181 cgtctgcagt atctagtaaa ctaaaagtgc cagcccctca gcccgtagtg aagaaagaca
      241 aacggcaaaa ttcttccagg tttagcgcca gcaataatag agaacttcaa aaactaccat
      301 ctttaaaaga tgttcctcct gctgatcaag agaagctttt tatccagaag ttacgtcagt
      361 gttgtgtcct ctttgacttt gtttccgatc cactaagtga cctaaagtgg aaggaagtaa
      421 aacgagctgc tttaagtgaa atggtagaat atatcaccca taatcggaat gtgatcacag
      481 agcctattta cccagaagta gtccatatgt ttgcagttaa catgtttcga acattaccac
      541 cttcctccaa ccctacggga gcagaatttg acccagagga agacgagcca acgttagaag
      601 cagcctggcc tcacctgcag cttgtttatg aatttttctt aagattttta gagtctccag
      661 atttccaacc taatatagcg aagaaatata ttgatcagaa gtttgtattg cagcttttag
      721 agctctttga cagtgaagat cctcgcgaga gagattttct taaaactacc cttcaccgaa
      781 tctatggaaa attcttaggc ttaagagctt acatcagaaa acagataaat aatatatttt
      841 atagatttat ttatgaaaca gagcatcaca atggcatagc agaattactg gaaatactgg
      901 gaagtataat taatggattt gccttaccac tgaaagaaga gcacaagatt ttcttattga
      961 aggtgttatt acctttgcac aaagtgaagt ctctgagcgt ctaccatcct cagctggcat
     1021 actgtgtagt gcagttttta gaaaaggaca gcaccctcac tgaaccggtg gtgatggcac
     1081 ttctcaagta ctggccaaag actcacagcc caaaagaagt catgttccta aatgaactag
     1141 aagagattct agacgtcatt gaaccatcag agtttgtgaa gatcatggag cctctcttcc
     1201 ggcagttagc caagtgtgtc tccagtcccc actttcaggt ggcagagcga gcgctgtatt
     1261 actggaataa cgagtacatc atgagtctca tcagcgacaa cgcagcaaag attctgccca
     1321 tcatgtttcc atccttgtac cgcaactcaa agacccactg gaacaagacg atacatggct
     1381 tgatatacaa cgcgctgaaa ctcttcatgg agatgaacca aaaactattt gatgactgca
     1441 cccagcagtt taaagcagag aaactgaaag agaagctaaa aatgaaagaa cgagaagaag
     1501 cgtgggttaa aatagaaaac ctagccaaag cgaaccccca ggcacagaag gacctgaaga
     1561 aggaccggcc cctggtgcgc cgcaagtccg agctgcccca ggacctgcac accaagagtg
     1621 ccctggaggc ccacggccgt gctgacgagc tggtccccca ggacgggcgc tagccccgac
     1681 gccgtgcgcg cgccagccct gctccggtct gtagaaagta cacgctctgt gtgccataca
     1741 aatcagttac actcaagtca aagctttctc caaccccgtt ccgtaggcaa taacatcctt
     1801 ccgcctcagc tcgagactag gagttcaaac aatggtgacc acccagggcc acatgccgcc
     1861 catggtgtcc cctgcacggt cccaagtaag ctggttttcc aaaatcagag ctaaggaaag
     1921 caccctagtc atcatcttca cgttctcccc aaatggaatt tgcgatcatt taagataggt
     1981 ggtccaatga taatatcagt gtttttcaaa tcaaaggagc actttaaaaa agtattacct
     2041 actttttaag actttacaac ccttgagatt gtttccacgt gattgttaat gccagcagtt
     2101 tctttctggg gttttttggt ttgtttttgt tttttaatct catggaagtg gttccttgct
     2161 gtcatcgttc caacaccact caactgggaa agtgacacga cagcccccgg ccgctgcctc
     2221 ttcctaaggt actgctttac tttgaccaat accatgcgta ccacaccctg ctgcttctgt
     2281 gtatcgctaa agccatattt ccaagtctgc ggtccaggac caggatccgg gagtgggcac
     2341 gtaggagaaa tttgttttaa aaagagcttt ctcttgactg gaattggaat tttaaagtga
     2401 tgtgtctgtg ttttactctt tgcagaatga tttctctcta cttacacgtt gttgcccttg
     2461 aacaaggctc ttcaattaga taaaattata ttctctgaga attccacatt ttgtagaaaa
     2521 ttaggacgag atcattttga gtgaggccag ctctcgggcc tgatgcaggc caccgctgcc
     2581 tttgggcaaa agtagcagga acagcgccgt gggcagggca ggcacccccc tccccgcagt
     2641 gtggccctga gggcttcgtg gaggcggcgg cagcgatggc ttccaaggag tctctttctg
     2701 ttgaaaagag cgcacgtaat agatgcctcg taaggaaaat acagcgtctt gagttttcat
     2761 cggtcttcaa tgctgctaaa tatttcagac ttccttgcat gtattcagct ttttgttttt
     2821 gatggaacag cacgaggaga aaaatcttta aacttaatgc tttgttcttt attactctcc
     2881 gggtggccag tattttgact tacttatcct gcttgaaagc tatttgagat gcgtactgct
     2941 gctctaaacc agtgattcta gtttcttctg tctctggcat aagattctat aacttgatgt
     3001 taaatgtctt gatgcatcaa aggtaaaacg tggcttcttt caggatctgt ttttcagttg
     3061 aggtcttggg aatccactca gacgttgtga gaagcagacg tggttccctg tgcagctgtg
     3121 gtacgtgctg ccccttggtt tcacttaaat cctttgatga tgtttatttc cttgtttcct
     3181 gtaggaaaat catttggagg gaggggattt ctggcgttca aagcaagtgc tagattagaa
     3241 gctgccccag ctgaaagggg aggaaccctc tttgtgagca ggaagtatcc atccacttca
     3301 ccatgatgaa atttatcatt taaaaaaagt ttagatgcct tctccttttg agggaaaaag
     3361 ggtgcttttt attgtataaa gcagcgtctt atgtattttg ataaaccatt gtttgaactt
     3421 ccgtctttag ctgatagatt ctcagatata cttggtttgg atgttcgcag ttatgtttgt
     3481 gacagaggtt tctgggaagc ctctcctctt gccctaggga aaaagcagaa taccagtgtt
     3541 tgggtgatgt ggaaagctca acgtataaga acatcttttt gtctaggttt tacttctgct
     3601 ctttattgaa gacaaacatt caccaaaaag ggaggaaaaa aaaagttttg agagaaacta
     3661 attttctttg acaagagtat tatttaatat tttgggctat gaaagttttc ctagttagta
     3721 ctcagattcc ctgtgctaat tgtccaactg acatattatt acatagatac actgtttatt
     3781 ctgtaccaaa ctgatttcag aagtcctgca ttgaaaataa actggtgact gtttttcttc
     3841 agaaagttct gcgtttggca tcttcactct ttctgaagtg tatctgtaca tcagaaatgt
     3901 cactattccg agtgtctttt tagtgcagct ttagtatggc ttccttttaa tattgtacat
     3961 acattgtacc tttgttttat ggtaatgagt aataaaaatg tagacttcat attttgtaca
     4021 aaatgtccta tgtacagaat aaaaaaagtt catagaaaca gcaaaaatag gtaagtggca
     4081 caattatttt tctttagaaa atatctgtaa cttgatgctt tagtgaaatg ttaagtacct
     4141 acatattttt taacattttg taattcaaaa ctttttgttt tgacattgtt tatgaagaga
     4201 gacttcatac acttgccatt taatatgctc ttttatctaa ttttaaaaga aactctaaaa
     4261 atggtgtatt atatggacta aataaagaac atgtgaattt ta
//
LOCUS       XM_032618824            4189 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X3, mRNA.
ACCESSION   XM_032618824
VERSION     XM_032618824.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4189
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4189
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 23 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             55..1560
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X3"
                     /protein_id="XP_032474715.1"
                     /db_xref="GeneID:116746995"
                     /translation="MNQFCCAPDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKE
                     VKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEP
                     TLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLK
                     TTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE
                     EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSP
                     KEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMS
                     LISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAE
                     KLKEKLKMKEREEAWVKIENLAKANPQYAVCSQASTMSLPVAVETDGPLFEDVQMLRK
                     TVNEEARQAQKDLKKDRPLVRRKSELPQDLHTKSALEAHGRADELVPQDGR"
     misc_feature    85..1296
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 gatcgtctgg ttctggttga actgaccttt cactgttgcg tttcattttg ttggatgaac
       61 cagttttgct gtgctccaga tgttcctcct gctgatcaag agaagctttt tatccagaag
      121 ttacgtcagt gttgtgtcct ctttgacttt gtttccgatc cactaagtga cctaaagtgg
      181 aaggaagtaa aacgagctgc tttaagtgaa atggtagaat atatcaccca taatcggaat
      241 gtgatcacag agcctattta cccagaagta gtccatatgt ttgcagttaa catgtttcga
      301 acattaccac cttcctccaa ccctacggga gcagaatttg acccagagga agacgagcca
      361 acgttagaag cagcctggcc tcacctgcag cttgtttatg aatttttctt aagattttta
      421 gagtctccag atttccaacc taatatagcg aagaaatata ttgatcagaa gtttgtattg
      481 cagcttttag agctctttga cagtgaagat cctcgcgaga gagattttct taaaactacc
      541 cttcaccgaa tctatggaaa attcttaggc ttaagagctt acatcagaaa acagataaat
      601 aatatatttt atagatttat ttatgaaaca gagcatcaca atggcatagc agaattactg
      661 gaaatactgg gaagtataat taatggattt gccttaccac tgaaagaaga gcacaagatt
      721 ttcttattga aggtgttatt acctttgcac aaagtgaagt ctctgagcgt ctaccatcct
      781 cagctggcat actgtgtagt gcagttttta gaaaaggaca gcaccctcac tgaaccggtg
      841 gtgatggcac ttctcaagta ctggccaaag actcacagcc caaaagaagt catgttccta
      901 aatgaactag aagagattct agacgtcatt gaaccatcag agtttgtgaa gatcatggag
      961 cctctcttcc ggcagttagc caagtgtgtc tccagtcccc actttcaggt ggcagagcga
     1021 gcgctgtatt actggaataa cgagtacatc atgagtctca tcagcgacaa cgcagcaaag
     1081 attctgccca tcatgtttcc atccttgtac cgcaactcaa agacccactg gaacaagacg
     1141 atacatggct tgatatacaa cgcgctgaaa ctcttcatgg agatgaacca aaaactattt
     1201 gatgactgca cccagcagtt taaagcagag aaactgaaag agaagctaaa aatgaaagaa
     1261 cgagaagaag cgtgggttaa aatagaaaac ctagccaaag cgaaccccca gtacgcagtg
     1321 tgtagtcaag cgagcaccat gagccttccg gtggcagtgg agacagatgg gcctttattt
     1381 gaagatgtgc agatgctgag aaagacagtg aacgaagagg ctcgccaggc acagaaggac
     1441 ctgaagaagg accggcccct ggtgcgccgc aagtccgagc tgccccagga cctgcacacc
     1501 aagagtgccc tggaggccca cggccgtgct gacgagctgg tcccccagga cgggcgctag
     1561 ccccgacgcc gtgcgcgcgc cagccctgct ccggtctgta gaaagtacac gctctgtgtg
     1621 ccatacaaat cagttacact caagtcaaag ctttctccaa ccccgttccg taggcaataa
     1681 catccttccg cctcagctcg agactaggag ttcaaacaat ggtgaccacc cagggccaca
     1741 tgccgcccat ggtgtcccct gcacggtccc aagtaagctg gttttccaaa atcagagcta
     1801 aggaaagcac cctagtcatc atcttcacgt tctccccaaa tggaatttgc gatcatttaa
     1861 gataggtggt ccaatgataa tatcagtgtt tttcaaatca aaggagcact ttaaaaaagt
     1921 attacctact ttttaagact ttacaaccct tgagattgtt tccacgtgat tgttaatgcc
     1981 agcagtttct ttctggggtt ttttggtttg tttttgtttt ttaatctcat ggaagtggtt
     2041 ccttgctgtc atcgttccaa caccactcaa ctgggaaagt gacacgacag cccccggccg
     2101 ctgcctcttc ctaaggtact gctttacttt gaccaatacc atgcgtacca caccctgctg
     2161 cttctgtgta tcgctaaagc catatttcca agtctgcggt ccaggaccag gatccgggag
     2221 tgggcacgta ggagaaattt gttttaaaaa gagctttctc ttgactggaa ttggaatttt
     2281 aaagtgatgt gtctgtgttt tactctttgc agaatgattt ctctctactt acacgttgtt
     2341 gcccttgaac aaggctcttc aattagataa aattatattc tctgagaatt ccacattttg
     2401 tagaaaatta ggacgagatc attttgagtg aggccagctc tcgggcctga tgcaggccac
     2461 cgctgccttt gggcaaaagt agcaggaaca gcgccgtggg cagggcaggc acccccctcc
     2521 ccgcagtgtg gccctgaggg cttcgtggag gcggcggcag cgatggcttc caaggagtct
     2581 ctttctgttg aaaagagcgc acgtaataga tgcctcgtaa ggaaaataca gcgtcttgag
     2641 ttttcatcgg tcttcaatgc tgctaaatat ttcagacttc cttgcatgta ttcagctttt
     2701 tgtttttgat ggaacagcac gaggagaaaa atctttaaac ttaatgcttt gttctttatt
     2761 actctccggg tggccagtat tttgacttac ttatcctgct tgaaagctat ttgagatgcg
     2821 tactgctgct ctaaaccagt gattctagtt tcttctgtct ctggcataag attctataac
     2881 ttgatgttaa atgtcttgat gcatcaaagg taaaacgtgg cttctttcag gatctgtttt
     2941 tcagttgagg tcttgggaat ccactcagac gttgtgagaa gcagacgtgg ttccctgtgc
     3001 agctgtggta cgtgctgccc cttggtttca cttaaatcct ttgatgatgt ttatttcctt
     3061 gtttcctgta ggaaaatcat ttggagggag gggatttctg gcgttcaaag caagtgctag
     3121 attagaagct gccccagctg aaaggggagg aaccctcttt gtgagcagga agtatccatc
     3181 cacttcacca tgatgaaatt tatcatttaa aaaaagttta gatgccttct ccttttgagg
     3241 gaaaaagggt gctttttatt gtataaagca gcgtcttatg tattttgata aaccattgtt
     3301 tgaacttccg tctttagctg atagattctc agatatactt ggtttggatg ttcgcagtta
     3361 tgtttgtgac agaggtttct gggaagcctc tcctcttgcc ctagggaaaa agcagaatac
     3421 cagtgtttgg gtgatgtgga aagctcaacg tataagaaca tctttttgtc taggttttac
     3481 ttctgctctt tattgaagac aaacattcac caaaaaggga ggaaaaaaaa agttttgaga
     3541 gaaactaatt ttctttgaca agagtattat ttaatatttt gggctatgaa agttttccta
     3601 gttagtactc agattccctg tgctaattgt ccaactgaca tattattaca tagatacact
     3661 gtttattctg taccaaactg atttcagaag tcctgcattg aaaataaact ggtgactgtt
     3721 tttcttcaga aagttctgcg tttggcatct tcactctttc tgaagtgtat ctgtacatca
     3781 gaaatgtcac tattccgagt gtctttttag tgcagcttta gtatggcttc cttttaatat
     3841 tgtacataca ttgtaccttt gttttatggt aatgagtaat aaaaatgtag acttcatatt
     3901 ttgtacaaaa tgtcctatgt acagaataaa aaaagttcat agaaacagca aaaataggta
     3961 agtggcacaa ttatttttct ttagaaaata tctgtaactt gatgctttag tgaaatgtta
     4021 agtacctaca tattttttaa cattttgtaa ttcaaaactt tttgttttga cattgtttat
     4081 gaagagagac ttcatacact tgccatttaa tatgctcttt tatctaattt taaaagaaac
     4141 tctaaaaatg gtgtattata tggactaaat aaagaacatg tgaatttta
//
LOCUS       XM_032618834            3448 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X4, mRNA.
ACCESSION   XM_032618834
VERSION     XM_032618834.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3448
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3448
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746995"
     CDS             57..1667
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X4"
                     /protein_id="XP_032474725.1"
                     /db_xref="GeneID:116746995"
                     /translation="MPNKNKKEKESPKAGKSGKSSKEGQDIIESEIPSRKNSLVAAPS
                     AVSSKLKVPAPQPVVKKDKRQNSSRFSASNNRELQKLPSLKDVPPADQEKLFIQKLRQ
                     CCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRT
                     LPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFV
                     LQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA
                     ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST
                     LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP
                     HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKL
                     FMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQAKSFRLLGDVKA
                     GSRVGRLGFGKLWSFRIWVVSVLAVVAV"
     misc_feature    318..1529
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 gagctgctgc tgcggggggc aggcggcggg agcggcggcg gtggtccgca ccagccatgc
       61 cgaataaaaa caagaaggag aaagaatcgc caaaagcagg gaaaagtgga aaaagttcaa
      121 aagaaggaca agacataata gaatcagaga ttcccagcag gaaaaacagc cttgttgctg
      181 ccccgtctgc agtatctagt aaactaaaag tgccagcccc tcagcccgta gtgaagaaag
      241 acaaacggca aaattcttcc aggtttagcg ccagcaataa tagagaactt caaaaactac
      301 catctttaaa agatgttcct cctgctgatc aagagaagct ttttatccag aagttacgtc
      361 agtgttgtgt cctctttgac tttgtttccg atccactaag tgacctaaag tggaaggaag
      421 taaaacgagc tgctttaagt gaaatggtag aatatatcac ccataatcgg aatgtgatca
      481 cagagcctat ttacccagaa gtagtccata tgtttgcagt taacatgttt cgaacattac
      541 caccttcctc caaccctacg ggagcagaat ttgacccaga ggaagacgag ccaacgttag
      601 aagcagcctg gcctcacctg cagcttgttt atgaattttt cttaagattt ttagagtctc
      661 cagatttcca acctaatata gcgaagaaat atattgatca gaagtttgta ttgcagcttt
      721 tagagctctt tgacagtgaa gatcctcgcg agagagattt tcttaaaact acccttcacc
      781 gaatctatgg aaaattctta ggcttaagag cttacatcag aaaacagata aataatatat
      841 tttatagatt tatttatgaa acagagcatc acaatggcat agcagaatta ctggaaatac
      901 tgggaagtat aattaatgga tttgccttac cactgaaaga agagcacaag attttcttat
      961 tgaaggtgtt attacctttg cacaaagtga agtctctgag cgtctaccat cctcagctgg
     1021 catactgtgt agtgcagttt ttagaaaagg acagcaccct cactgaaccg gtggtgatgg
     1081 cacttctcaa gtactggcca aagactcaca gcccaaaaga agtcatgttc ctaaatgaac
     1141 tagaagagat tctagacgtc attgaaccat cagagtttgt gaagatcatg gagcctctct
     1201 tccggcagtt agccaagtgt gtctccagtc cccactttca ggtggcagag cgagcgctgt
     1261 attactggaa taacgagtac atcatgagtc tcatcagcga caacgcagca aagattctgc
     1321 ccatcatgtt tccatccttg taccgcaact caaagaccca ctggaacaag acgatacatg
     1381 gcttgatata caacgcgctg aaactcttca tggagatgaa ccaaaaacta tttgatgact
     1441 gcacccagca gtttaaagca gagaaactga aagagaagct aaaaatgaaa gaacgagaag
     1501 aagcgtgggt taaaatagaa aacctagcca aagcgaaccc ccaggctaag tcttttcgtc
     1561 tgcttggaga tgtgaaagca ggttcccgtg taggccggtt gggatttgga aagctgtggt
     1621 ccttcaggat ttgggttgtg tctgttttag cagttgtggc ggtttaattt tttcatgtga
     1681 ttaaaaaatg tgatttaatt tttttaattt aatgtttaat gtgatttaat ttttttaaag
     1741 tgaagatttt aatagtgaag atttctaacg tagtgaagat ttctaacgta aatatgcttt
     1801 tcctagtcca ccaaaagagg ccatataaca gttttactcc tgtctccctt ttgtggggat
     1861 cgtgtgaaat gaagacaagg cacttctgtg aattttaagt gtggctctgg ctcagtgttt
     1921 ctgccccttt gcaatgacaa gacgaggcca taggaggccc agggcacaga gtctggttgc
     1981 ctgcctttcc tttgggagat gagcctctct ggggaaatgt gccttcctta tatcacctgt
     2041 caagaacttc agcctcggga aggtttttat tcctagtgag aatcctctgg ccccgagcct
     2101 gctagtgaca gagatttcct gtaggcattt tgtagcatcc ttgtgtgtac ttttccttgc
     2161 cctgagcccc agcagggcct cggagcccgc actgctctag gcacggccgc tggcagggtc
     2221 cgtgtagagc gctggtgtcc tcttggtgtg gccgaagctg aagatccctg cgccactgcc
     2281 cgagcactgc agtgtctctg ttctgtctgc cccgcccagc tgagccccag ggggcaaggc
     2341 gccgtgcaga ccccagctcc ctgctcccag caggtcacca cctctctggg cagatgggtg
     2401 ccagctgcgt gtcccaaatg cgctttccca ggatacaaaa atgagaatga gacacggccc
     2461 caggtgtcaa ggaggggagc caggatggaa gcaaagagaa tccagtccgg gcggccggat
     2521 gatagcccac gctgggggtt gtgctggcga tgctggcgag aggcctggtc gcgcctttag
     2581 agacacgtaa aggaaggctg gagggtaggg tggccaaggc gaggcgtccc cacggcacca
     2641 ggaccttagc ccccaagagt gctgggcgcc ctggaggtgg agccagcctc ttagaggctc
     2701 acctaagggg cttaaccagc cgggggctca aggcagggga aggggcgact gggaaaccga
     2761 gctgcccata gacggagcat cactcatggg ggaggggggg tgtgatctgt gtcagggaca
     2821 aagctggaga gggggcagga cccgtggatt ttatgcccag aacagcgtgc gggcgtcaca
     2881 gtgtcatcca gaactagtgg cctcggcagg ctcgcgctca ggaagctctt ccggacactc
     2941 gggggctcct ggggaaacgt gtggagatgc cgctgctgga cggggctgac gggggggggc
     3001 tgcaggcata gcgggccgcg ggggcctggg tgcccattgg gtggaggaaa caagagccaa
     3061 gggtgtggct cccgcgagga agcggcgcgt ttcccagggt ggtggagagg ctgggccagg
     3121 cagccacggg ggccggtggg gaggtcgggg cggcgcgggt gagggtcagc gagaccctcg
     3181 gagcgtgagt acagactatg agtacagact gggaagacag tacagactgt cttcccagca
     3241 gtgacagagg agcggggcgc ggccggcacc acaggcaggg aggggcagct tcagggatga
     3301 ctgtggcccc cgcgtggcca cagagcggtc acccacagcc tggtgcccgg cgtcccgtcg
     3361 gagaggcgag gcccagagcc gcgggggtga gccgaggggt cgggggcagg aggggctgct
     3421 gagagctgag cggccctctt ggtcgctc
//
LOCUS       XM_032618844            4512 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X5, mRNA.
ACCESSION   XM_032618844
VERSION     XM_032618844.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4512
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4512
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 34
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             309..1883
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X5"
                     /protein_id="XP_032474735.1"
                     /db_xref="GeneID:116746995"
                     /translation="MLTCNKAGSRMVVDAANSNGPFQPVALLHIRDVPPADQEKLFIQ
                     KLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVN
                     MFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYID
                     QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHH
                     NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE
                     KDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKC
                     VSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYN
                     ALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQYAVCSQAS
                     TMSLPVAVETDGPLFEDVQMLRKTVNEEARQAQKDLKKDRPLVRRKSELPQDLHTKSA
                     LEAHGRADELVPQDGR"
     misc_feature    408..1619
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 ctgcccctta agaaatggga tctttgccta aaagttattg agaaatgaag actgcagaaa
       61 gccaaaaaat gtccaggctt ttcatgaaca ctgacagcca aacagaatgc tctttccatt
      121 tgcagttttt ttagtgtcat tttaagttgc agcttccggc caatcagcga gccccgtgcc
      181 tgctgacatc acgaaccagc cagttccctc cagctgcaga gagcttcagt ttgtcttttt
      241 tttttaaact aaaatggagg ctggtttctt gccttaagga gtacattgcc tttcccgctg
      301 aagtctagat gttgacatgt aataaagcgg gcagcaggat ggtggtggat gcggccaact
      361 ccaatgggcc tttccagccc gtggcccttc tccatattcg agatgttcct cctgctgatc
      421 aagagaagct ttttatccag aagttacgtc agtgttgtgt cctctttgac tttgtttccg
      481 atccactaag tgacctaaag tggaaggaag taaaacgagc tgctttaagt gaaatggtag
      541 aatatatcac ccataatcgg aatgtgatca cagagcctat ttacccagaa gtagtccata
      601 tgtttgcagt taacatgttt cgaacattac caccttcctc caaccctacg ggagcagaat
      661 ttgacccaga ggaagacgag ccaacgttag aagcagcctg gcctcacctg cagcttgttt
      721 atgaattttt cttaagattt ttagagtctc cagatttcca acctaatata gcgaagaaat
      781 atattgatca gaagtttgta ttgcagcttt tagagctctt tgacagtgaa gatcctcgcg
      841 agagagattt tcttaaaact acccttcacc gaatctatgg aaaattctta ggcttaagag
      901 cttacatcag aaaacagata aataatatat tttatagatt tatttatgaa acagagcatc
      961 acaatggcat agcagaatta ctggaaatac tgggaagtat aattaatgga tttgccttac
     1021 cactgaaaga agagcacaag attttcttat tgaaggtgtt attacctttg cacaaagtga
     1081 agtctctgag cgtctaccat cctcagctgg catactgtgt agtgcagttt ttagaaaagg
     1141 acagcaccct cactgaaccg gtggtgatgg cacttctcaa gtactggcca aagactcaca
     1201 gcccaaaaga agtcatgttc ctaaatgaac tagaagagat tctagacgtc attgaaccat
     1261 cagagtttgt gaagatcatg gagcctctct tccggcagtt agccaagtgt gtctccagtc
     1321 cccactttca ggtggcagag cgagcgctgt attactggaa taacgagtac atcatgagtc
     1381 tcatcagcga caacgcagca aagattctgc ccatcatgtt tccatccttg taccgcaact
     1441 caaagaccca ctggaacaag acgatacatg gcttgatata caacgcgctg aaactcttca
     1501 tggagatgaa ccaaaaacta tttgatgact gcacccagca gtttaaagca gagaaactga
     1561 aagagaagct aaaaatgaaa gaacgagaag aagcgtgggt taaaatagaa aacctagcca
     1621 aagcgaaccc ccagtacgca gtgtgtagtc aagcgagcac catgagcctt ccggtggcag
     1681 tggagacaga tgggccttta tttgaagatg tgcagatgct gagaaagaca gtgaacgaag
     1741 aggctcgcca ggcacagaag gacctgaaga aggaccggcc cctggtgcgc cgcaagtccg
     1801 agctgcccca ggacctgcac accaagagtg ccctggaggc ccacggccgt gctgacgagc
     1861 tggtccccca ggacgggcgc tagccccgac gccgtgcgcg cgccagccct gctccggtct
     1921 gtagaaagta cacgctctgt gtgccataca aatcagttac actcaagtca aagctttctc
     1981 caaccccgtt ccgtaggcaa taacatcctt ccgcctcagc tcgagactag gagttcaaac
     2041 aatggtgacc acccagggcc acatgccgcc catggtgtcc cctgcacggt cccaagtaag
     2101 ctggttttcc aaaatcagag ctaaggaaag caccctagtc atcatcttca cgttctcccc
     2161 aaatggaatt tgcgatcatt taagataggt ggtccaatga taatatcagt gtttttcaaa
     2221 tcaaaggagc actttaaaaa agtattacct actttttaag actttacaac ccttgagatt
     2281 gtttccacgt gattgttaat gccagcagtt tctttctggg gttttttggt ttgtttttgt
     2341 tttttaatct catggaagtg gttccttgct gtcatcgttc caacaccact caactgggaa
     2401 agtgacacga cagcccccgg ccgctgcctc ttcctaaggt actgctttac tttgaccaat
     2461 accatgcgta ccacaccctg ctgcttctgt gtatcgctaa agccatattt ccaagtctgc
     2521 ggtccaggac caggatccgg gagtgggcac gtaggagaaa tttgttttaa aaagagcttt
     2581 ctcttgactg gaattggaat tttaaagtga tgtgtctgtg ttttactctt tgcagaatga
     2641 tttctctcta cttacacgtt gttgcccttg aacaaggctc ttcaattaga taaaattata
     2701 ttctctgaga attccacatt ttgtagaaaa ttaggacgag atcattttga gtgaggccag
     2761 ctctcgggcc tgatgcaggc caccgctgcc tttgggcaaa agtagcagga acagcgccgt
     2821 gggcagggca ggcacccccc tccccgcagt gtggccctga gggcttcgtg gaggcggcgg
     2881 cagcgatggc ttccaaggag tctctttctg ttgaaaagag cgcacgtaat agatgcctcg
     2941 taaggaaaat acagcgtctt gagttttcat cggtcttcaa tgctgctaaa tatttcagac
     3001 ttccttgcat gtattcagct ttttgttttt gatggaacag cacgaggaga aaaatcttta
     3061 aacttaatgc tttgttcttt attactctcc gggtggccag tattttgact tacttatcct
     3121 gcttgaaagc tatttgagat gcgtactgct gctctaaacc agtgattcta gtttcttctg
     3181 tctctggcat aagattctat aacttgatgt taaatgtctt gatgcatcaa aggtaaaacg
     3241 tggcttcttt caggatctgt ttttcagttg aggtcttggg aatccactca gacgttgtga
     3301 gaagcagacg tggttccctg tgcagctgtg gtacgtgctg ccccttggtt tcacttaaat
     3361 cctttgatga tgtttatttc cttgtttcct gtaggaaaat catttggagg gaggggattt
     3421 ctggcgttca aagcaagtgc tagattagaa gctgccccag ctgaaagggg aggaaccctc
     3481 tttgtgagca ggaagtatcc atccacttca ccatgatgaa atttatcatt taaaaaaagt
     3541 ttagatgcct tctccttttg agggaaaaag ggtgcttttt attgtataaa gcagcgtctt
     3601 atgtattttg ataaaccatt gtttgaactt ccgtctttag ctgatagatt ctcagatata
     3661 cttggtttgg atgttcgcag ttatgtttgt gacagaggtt tctgggaagc ctctcctctt
     3721 gccctaggga aaaagcagaa taccagtgtt tgggtgatgt ggaaagctca acgtataaga
     3781 acatcttttt gtctaggttt tacttctgct ctttattgaa gacaaacatt caccaaaaag
     3841 ggaggaaaaa aaaagttttg agagaaacta attttctttg acaagagtat tatttaatat
     3901 tttgggctat gaaagttttc ctagttagta ctcagattcc ctgtgctaat tgtccaactg
     3961 acatattatt acatagatac actgtttatt ctgtaccaaa ctgatttcag aagtcctgca
     4021 ttgaaaataa actggtgact gtttttcttc agaaagttct gcgtttggca tcttcactct
     4081 ttctgaagtg tatctgtaca tcagaaatgt cactattccg agtgtctttt tagtgcagct
     4141 ttagtatggc ttccttttaa tattgtacat acattgtacc tttgttttat ggtaatgagt
     4201 aataaaaatg tagacttcat attttgtaca aaatgtccta tgtacagaat aaaaaaagtt
     4261 catagaaaca gcaaaaatag gtaagtggca caattatttt tctttagaaa atatctgtaa
     4321 cttgatgctt tagtgaaatg ttaagtacct acatattttt taacattttg taattcaaaa
     4381 ctttttgttt tgacattgtt tatgaagaga gacttcatac acttgccatt taatatgctc
     4441 ttttatctaa ttttaaaaga aactctaaaa atggtgtatt atatggacta aataaagaac
     4501 atgtgaattt ta
//
LOCUS       XM_032618851            2221 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X6, mRNA.
ACCESSION   XM_032618851
VERSION     XM_032618851.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2221
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116746995"
     CDS             54..1568
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X6"
                     /protein_id="XP_032474742.1"
                     /db_xref="GeneID:116746995"
                     /translation="MPNKNKKEKESPKAGKSGKSSKEGQDIIESEIPSRKNSLVAAPS
                     AVSSKLKVPAPQPVVKKDKRQNSSRFSASNNRELQKLPSLKDVPPADQEKLFIQKLRQ
                     CCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRT
                     LPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFV
                     LQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA
                     ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST
                     LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP
                     HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKL
                     FMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQHALAGGRQ"
     misc_feature    315..1526
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 ctgctgctgc ggggggcagg cggcgggagc ggcggcggtg gtccgcacca gccatgccga
       61 ataaaaacaa gaaggagaaa gaatcgccaa aagcagggaa aagtggaaaa agttcaaaag
      121 aaggacaaga cataatagaa tcagagattc ccagcaggaa aaacagcctt gttgctgccc
      181 cgtctgcagt atctagtaaa ctaaaagtgc cagcccctca gcccgtagtg aagaaagaca
      241 aacggcaaaa ttcttccagg tttagcgcca gcaataatag agaacttcaa aaactaccat
      301 ctttaaaaga tgttcctcct gctgatcaag agaagctttt tatccagaag ttacgtcagt
      361 gttgtgtcct ctttgacttt gtttccgatc cactaagtga cctaaagtgg aaggaagtaa
      421 aacgagctgc tttaagtgaa atggtagaat atatcaccca taatcggaat gtgatcacag
      481 agcctattta cccagaagta gtccatatgt ttgcagttaa catgtttcga acattaccac
      541 cttcctccaa ccctacggga gcagaatttg acccagagga agacgagcca acgttagaag
      601 cagcctggcc tcacctgcag cttgtttatg aatttttctt aagattttta gagtctccag
      661 atttccaacc taatatagcg aagaaatata ttgatcagaa gtttgtattg cagcttttag
      721 agctctttga cagtgaagat cctcgcgaga gagattttct taaaactacc cttcaccgaa
      781 tctatggaaa attcttaggc ttaagagctt acatcagaaa acagataaat aatatatttt
      841 atagatttat ttatgaaaca gagcatcaca atggcatagc agaattactg gaaatactgg
      901 gaagtataat taatggattt gccttaccac tgaaagaaga gcacaagatt ttcttattga
      961 aggtgttatt acctttgcac aaagtgaagt ctctgagcgt ctaccatcct cagctggcat
     1021 actgtgtagt gcagttttta gaaaaggaca gcaccctcac tgaaccggtg gtgatggcac
     1081 ttctcaagta ctggccaaag actcacagcc caaaagaagt catgttccta aatgaactag
     1141 aagagattct agacgtcatt gaaccatcag agtttgtgaa gatcatggag cctctcttcc
     1201 ggcagttagc caagtgtgtc tccagtcccc actttcaggt ggcagagcga gcgctgtatt
     1261 actggaataa cgagtacatc atgagtctca tcagcgacaa cgcagcaaag attctgccca
     1321 tcatgtttcc atccttgtac cgcaactcaa agacccactg gaacaagacg atacatggct
     1381 tgatatacaa cgcgctgaaa ctcttcatgg agatgaacca aaaactattt gatgactgca
     1441 cccagcagtt taaagcagag aaactgaaag agaagctaaa aatgaaagaa cgagaagaag
     1501 cgtgggttaa aatagaaaac ctagccaaag cgaaccccca gcacgccctg gcaggtgggc
     1561 gccaatgacg tgtcttctgg aactgccagc actgaagcag tgtcccccga tgcattacct
     1621 cgggctgacc cccgggggct gggggttgga gccctgtccc gacagacgtt ctttctgatg
     1681 ctatgtgcct gtccgattat cactgaaaat catttgccac actaaggatt ctcaggctgt
     1741 ccttagctcc ccagaaaaga ttttaccttc tgaggaaagc tgctcggcta cccctaaaat
     1801 cctgaaaggt tcaatacagt gaaccagact acaagctatc tatttatttt ctttggtgag
     1861 aggtatgcat aaatcattat tatctcagtt gctatgtggg ttttcaatct ctctgatgtt
     1921 taataaaaag tgatacatga atacagagtt aaaagtatgt actttaccta tataacaaca
     1981 tactgacttg tattccctct gataaaacta tgatcaagac acaaaccata ggaaaactga
     2041 atgacatcct taagtgtatg tccttgatgc cacctgaaac aagtaactgg cgtttttcta
     2101 accattttta ttccatgctc ttacacagaa atgctatttt atgtgaaaat agcatgtgaa
     2161 actgtgtagt agctaattta ggtagatagc tatgggtatg tacttttttt tttttttttt
     2221 t
//
LOCUS       XM_032618857            4225 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X7, mRNA.
ACCESSION   XM_032618857
VERSION     XM_032618857.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4225
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 23 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             94..1596
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X7"
                     /protein_id="XP_032474748.1"
                     /db_xref="GeneID:116746995"
                     /translation="MQILGHEDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEV
                     KRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPT
                     LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKT
                     TLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE
                     HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPK
                     EVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL
                     ISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEK
                     LKEKLKMKEREEAWVKIENLAKANPQYAVCSQASTMSLPVAVETDGPLFEDVQMLRKT
                     VNEEARQAQKDLKKDRPLVRRKSELPQDLHTKSALEAHGRADELVPQDGR"
     misc_feature    121..1332
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 actttctgct ctcagtttct cacagcgctg tagagtgtgg tgcagctgaa accaggttag
       61 ttgatcttat ggtgtcatct agaaaaacag gagatgcaga tcctgggtca tgaagatgtt
      121 cctcctgctg atcaagagaa gctttttatc cagaagttac gtcagtgttg tgtcctcttt
      181 gactttgttt ccgatccact aagtgaccta aagtggaagg aagtaaaacg agctgcttta
      241 agtgaaatgg tagaatatat cacccataat cggaatgtga tcacagagcc tatttaccca
      301 gaagtagtcc atatgtttgc agttaacatg tttcgaacat taccaccttc ctccaaccct
      361 acgggagcag aatttgaccc agaggaagac gagccaacgt tagaagcagc ctggcctcac
      421 ctgcagcttg tttatgaatt tttcttaaga tttttagagt ctccagattt ccaacctaat
      481 atagcgaaga aatatattga tcagaagttt gtattgcagc ttttagagct ctttgacagt
      541 gaagatcctc gcgagagaga ttttcttaaa actacccttc accgaatcta tggaaaattc
      601 ttaggcttaa gagcttacat cagaaaacag ataaataata tattttatag atttatttat
      661 gaaacagagc atcacaatgg catagcagaa ttactggaaa tactgggaag tataattaat
      721 ggatttgcct taccactgaa agaagagcac aagattttct tattgaaggt gttattacct
      781 ttgcacaaag tgaagtctct gagcgtctac catcctcagc tggcatactg tgtagtgcag
      841 tttttagaaa aggacagcac cctcactgaa ccggtggtga tggcacttct caagtactgg
      901 ccaaagactc acagcccaaa agaagtcatg ttcctaaatg aactagaaga gattctagac
      961 gtcattgaac catcagagtt tgtgaagatc atggagcctc tcttccggca gttagccaag
     1021 tgtgtctcca gtccccactt tcaggtggca gagcgagcgc tgtattactg gaataacgag
     1081 tacatcatga gtctcatcag cgacaacgca gcaaagattc tgcccatcat gtttccatcc
     1141 ttgtaccgca actcaaagac ccactggaac aagacgatac atggcttgat atacaacgcg
     1201 ctgaaactct tcatggagat gaaccaaaaa ctatttgatg actgcaccca gcagtttaaa
     1261 gcagagaaac tgaaagagaa gctaaaaatg aaagaacgag aagaagcgtg ggttaaaata
     1321 gaaaacctag ccaaagcgaa cccccagtac gcagtgtgta gtcaagcgag caccatgagc
     1381 cttccggtgg cagtggagac agatgggcct ttatttgaag atgtgcagat gctgagaaag
     1441 acagtgaacg aagaggctcg ccaggcacag aaggacctga agaaggaccg gcccctggtg
     1501 cgccgcaagt ccgagctgcc ccaggacctg cacaccaaga gtgccctgga ggcccacggc
     1561 cgtgctgacg agctggtccc ccaggacggg cgctagcccc gacgccgtgc gcgcgccagc
     1621 cctgctccgg tctgtagaaa gtacacgctc tgtgtgccat acaaatcagt tacactcaag
     1681 tcaaagcttt ctccaacccc gttccgtagg caataacatc cttccgcctc agctcgagac
     1741 taggagttca aacaatggtg accacccagg gccacatgcc gcccatggtg tcccctgcac
     1801 ggtcccaagt aagctggttt tccaaaatca gagctaagga aagcacccta gtcatcatct
     1861 tcacgttctc cccaaatgga atttgcgatc atttaagata ggtggtccaa tgataatatc
     1921 agtgtttttc aaatcaaagg agcactttaa aaaagtatta cctacttttt aagactttac
     1981 aacccttgag attgtttcca cgtgattgtt aatgccagca gtttctttct ggggtttttt
     2041 ggtttgtttt tgttttttaa tctcatggaa gtggttcctt gctgtcatcg ttccaacacc
     2101 actcaactgg gaaagtgaca cgacagcccc cggccgctgc ctcttcctaa ggtactgctt
     2161 tactttgacc aataccatgc gtaccacacc ctgctgcttc tgtgtatcgc taaagccata
     2221 tttccaagtc tgcggtccag gaccaggatc cgggagtggg cacgtaggag aaatttgttt
     2281 taaaaagagc tttctcttga ctggaattgg aattttaaag tgatgtgtct gtgttttact
     2341 ctttgcagaa tgatttctct ctacttacac gttgttgccc ttgaacaagg ctcttcaatt
     2401 agataaaatt atattctctg agaattccac attttgtaga aaattaggac gagatcattt
     2461 tgagtgaggc cagctctcgg gcctgatgca ggccaccgct gcctttgggc aaaagtagca
     2521 ggaacagcgc cgtgggcagg gcaggcaccc ccctccccgc agtgtggccc tgagggcttc
     2581 gtggaggcgg cggcagcgat ggcttccaag gagtctcttt ctgttgaaaa gagcgcacgt
     2641 aatagatgcc tcgtaaggaa aatacagcgt cttgagtttt catcggtctt caatgctgct
     2701 aaatatttca gacttccttg catgtattca gctttttgtt tttgatggaa cagcacgagg
     2761 agaaaaatct ttaaacttaa tgctttgttc tttattactc tccgggtggc cagtattttg
     2821 acttacttat cctgcttgaa agctatttga gatgcgtact gctgctctaa accagtgatt
     2881 ctagtttctt ctgtctctgg cataagattc tataacttga tgttaaatgt cttgatgcat
     2941 caaaggtaaa acgtggcttc tttcaggatc tgtttttcag ttgaggtctt gggaatccac
     3001 tcagacgttg tgagaagcag acgtggttcc ctgtgcagct gtggtacgtg ctgccccttg
     3061 gtttcactta aatcctttga tgatgtttat ttccttgttt cctgtaggaa aatcatttgg
     3121 agggagggga tttctggcgt tcaaagcaag tgctagatta gaagctgccc cagctgaaag
     3181 gggaggaacc ctctttgtga gcaggaagta tccatccact tcaccatgat gaaatttatc
     3241 atttaaaaaa agtttagatg ccttctcctt ttgagggaaa aagggtgctt tttattgtat
     3301 aaagcagcgt cttatgtatt ttgataaacc attgtttgaa cttccgtctt tagctgatag
     3361 attctcagat atacttggtt tggatgttcg cagttatgtt tgtgacagag gtttctggga
     3421 agcctctcct cttgccctag ggaaaaagca gaataccagt gtttgggtga tgtggaaagc
     3481 tcaacgtata agaacatctt tttgtctagg ttttacttct gctctttatt gaagacaaac
     3541 attcaccaaa aagggaggaa aaaaaaagtt ttgagagaaa ctaattttct ttgacaagag
     3601 tattatttaa tattttgggc tatgaaagtt ttcctagtta gtactcagat tccctgtgct
     3661 aattgtccaa ctgacatatt attacataga tacactgttt attctgtacc aaactgattt
     3721 cagaagtcct gcattgaaaa taaactggtg actgtttttc ttcagaaagt tctgcgtttg
     3781 gcatcttcac tctttctgaa gtgtatctgt acatcagaaa tgtcactatt ccgagtgtct
     3841 ttttagtgca gctttagtat ggcttccttt taatattgta catacattgt acctttgttt
     3901 tatggtaatg agtaataaaa atgtagactt catattttgt acaaaatgtc ctatgtacag
     3961 aataaaaaaa gttcatagaa acagcaaaaa taggtaagtg gcacaattat ttttctttag
     4021 aaaatatctg taacttgatg ctttagtgaa atgttaagta cctacatatt ttttaacatt
     4081 ttgtaattca aaactttttg ttttgacatt gtttatgaag agagacttca tacacttgcc
     4141 atttaatatg ctcttttatc taattttaaa agaaactcta aaaatggtgt attatatgga
     4201 ctaaataaag aacatgtgaa tttta
//
LOCUS       XM_032618864            4390 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X8, mRNA.
ACCESSION   XM_032618864
VERSION     XM_032618864.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4390
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4390
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 long SRA reads, 28 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             304..1761
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X8"
                     /protein_id="XP_032474755.1"
                     /db_xref="GeneID:116746995"
                     /translation="MLTCNKAGSRMVVDAANSNGPFQPVALLHIRDVPPADQEKLFIQ
                     KLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVN
                     MFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYID
                     QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHH
                     NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE
                     KDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKC
                     VSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYN
                     ALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQAQKDLKKD
                     RPLVRRKSELPQDLHTKSALEAHGRADELVPQDGR"
     misc_feature    403..1614
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 ccttaagaaa tgggatcttt gcctaaaagt tattgagaaa tgaagactgc agaaagccaa
       61 aaaatgtcca ggcttttcat gaacactgac agccaaacag aatgctcttt ccatttgcag
      121 tttttttagt gtcattttaa gttgcagctt ccggccaatc agcgagcccc gtgcctgctg
      181 acatcacgaa ccagccagtt ccctccagct gcagagagct tcagtttgtc tttttttttt
      241 aaactaaaat ggaggctggt ttcttgcctt aaggagtaca ttgcctttcc cgctgaagtc
      301 tagatgttga catgtaataa agcgggcagc aggatggtgg tggatgcggc caactccaat
      361 gggcctttcc agcccgtggc ccttctccat attcgagatg ttcctcctgc tgatcaagag
      421 aagcttttta tccagaagtt acgtcagtgt tgtgtcctct ttgactttgt ttccgatcca
      481 ctaagtgacc taaagtggaa ggaagtaaaa cgagctgctt taagtgaaat ggtagaatat
      541 atcacccata atcggaatgt gatcacagag cctatttacc cagaagtagt ccatatgttt
      601 gcagttaaca tgtttcgaac attaccacct tcctccaacc ctacgggagc agaatttgac
      661 ccagaggaag acgagccaac gttagaagca gcctggcctc acctgcagct tgtttatgaa
      721 tttttcttaa gatttttaga gtctccagat ttccaaccta atatagcgaa gaaatatatt
      781 gatcagaagt ttgtattgca gcttttagag ctctttgaca gtgaagatcc tcgcgagaga
      841 gattttctta aaactaccct tcaccgaatc tatggaaaat tcttaggctt aagagcttac
      901 atcagaaaac agataaataa tatattttat agatttattt atgaaacaga gcatcacaat
      961 ggcatagcag aattactgga aatactggga agtataatta atggatttgc cttaccactg
     1021 aaagaagagc acaagatttt cttattgaag gtgttattac ctttgcacaa agtgaagtct
     1081 ctgagcgtct accatcctca gctggcatac tgtgtagtgc agtttttaga aaaggacagc
     1141 accctcactg aaccggtggt gatggcactt ctcaagtact ggccaaagac tcacagccca
     1201 aaagaagtca tgttcctaaa tgaactagaa gagattctag acgtcattga accatcagag
     1261 tttgtgaaga tcatggagcc tctcttccgg cagttagcca agtgtgtctc cagtccccac
     1321 tttcaggtgg cagagcgagc gctgtattac tggaataacg agtacatcat gagtctcatc
     1381 agcgacaacg cagcaaagat tctgcccatc atgtttccat ccttgtaccg caactcaaag
     1441 acccactgga acaagacgat acatggcttg atatacaacg cgctgaaact cttcatggag
     1501 atgaaccaaa aactatttga tgactgcacc cagcagttta aagcagagaa actgaaagag
     1561 aagctaaaaa tgaaagaacg agaagaagcg tgggttaaaa tagaaaacct agccaaagcg
     1621 aacccccagg cacagaagga cctgaagaag gaccggcccc tggtgcgccg caagtccgag
     1681 ctgccccagg acctgcacac caagagtgcc ctggaggccc acggccgtgc tgacgagctg
     1741 gtcccccagg acgggcgcta gccccgacgc cgtgcgcgcg ccagccctgc tccggtctgt
     1801 agaaagtaca cgctctgtgt gccatacaaa tcagttacac tcaagtcaaa gctttctcca
     1861 accccgttcc gtaggcaata acatccttcc gcctcagctc gagactagga gttcaaacaa
     1921 tggtgaccac ccagggccac atgccgccca tggtgtcccc tgcacggtcc caagtaagct
     1981 ggttttccaa aatcagagct aaggaaagca ccctagtcat catcttcacg ttctccccaa
     2041 atggaatttg cgatcattta agataggtgg tccaatgata atatcagtgt ttttcaaatc
     2101 aaaggagcac tttaaaaaag tattacctac tttttaagac tttacaaccc ttgagattgt
     2161 ttccacgtga ttgttaatgc cagcagtttc tttctggggt tttttggttt gtttttgttt
     2221 tttaatctca tggaagtggt tccttgctgt catcgttcca acaccactca actgggaaag
     2281 tgacacgaca gcccccggcc gctgcctctt cctaaggtac tgctttactt tgaccaatac
     2341 catgcgtacc acaccctgct gcttctgtgt atcgctaaag ccatatttcc aagtctgcgg
     2401 tccaggacca ggatccggga gtgggcacgt aggagaaatt tgttttaaaa agagctttct
     2461 cttgactgga attggaattt taaagtgatg tgtctgtgtt ttactctttg cagaatgatt
     2521 tctctctact tacacgttgt tgcccttgaa caaggctctt caattagata aaattatatt
     2581 ctctgagaat tccacatttt gtagaaaatt aggacgagat cattttgagt gaggccagct
     2641 ctcgggcctg atgcaggcca ccgctgcctt tgggcaaaag tagcaggaac agcgccgtgg
     2701 gcagggcagg cacccccctc cccgcagtgt ggccctgagg gcttcgtgga ggcggcggca
     2761 gcgatggctt ccaaggagtc tctttctgtt gaaaagagcg cacgtaatag atgcctcgta
     2821 aggaaaatac agcgtcttga gttttcatcg gtcttcaatg ctgctaaata tttcagactt
     2881 ccttgcatgt attcagcttt ttgtttttga tggaacagca cgaggagaaa aatctttaaa
     2941 cttaatgctt tgttctttat tactctccgg gtggccagta ttttgactta cttatcctgc
     3001 ttgaaagcta tttgagatgc gtactgctgc tctaaaccag tgattctagt ttcttctgtc
     3061 tctggcataa gattctataa cttgatgtta aatgtcttga tgcatcaaag gtaaaacgtg
     3121 gcttctttca ggatctgttt ttcagttgag gtcttgggaa tccactcaga cgttgtgaga
     3181 agcagacgtg gttccctgtg cagctgtggt acgtgctgcc ccttggtttc acttaaatcc
     3241 tttgatgatg tttatttcct tgtttcctgt aggaaaatca tttggaggga ggggatttct
     3301 ggcgttcaaa gcaagtgcta gattagaagc tgccccagct gaaaggggag gaaccctctt
     3361 tgtgagcagg aagtatccat ccacttcacc atgatgaaat ttatcattta aaaaaagttt
     3421 agatgccttc tccttttgag ggaaaaaggg tgctttttat tgtataaagc agcgtcttat
     3481 gtattttgat aaaccattgt ttgaacttcc gtctttagct gatagattct cagatatact
     3541 tggtttggat gttcgcagtt atgtttgtga cagaggtttc tgggaagcct ctcctcttgc
     3601 cctagggaaa aagcagaata ccagtgtttg ggtgatgtgg aaagctcaac gtataagaac
     3661 atctttttgt ctaggtttta cttctgctct ttattgaaga caaacattca ccaaaaaggg
     3721 aggaaaaaaa aagttttgag agaaactaat tttctttgac aagagtatta tttaatattt
     3781 tgggctatga aagttttcct agttagtact cagattccct gtgctaattg tccaactgac
     3841 atattattac atagatacac tgtttattct gtaccaaact gatttcagaa gtcctgcatt
     3901 gaaaataaac tggtgactgt ttttcttcag aaagttctgc gtttggcatc ttcactcttt
     3961 ctgaagtgta tctgtacatc agaaatgtca ctattccgag tgtcttttta gtgcagcttt
     4021 agtatggctt ccttttaata ttgtacatac attgtacctt tgttttatgg taatgagtaa
     4081 taaaaatgta gacttcatat tttgtacaaa atgtcctatg tacagaataa aaaaagttca
     4141 tagaaacagc aaaaataggt aagtggcaca attatttttc tttagaaaat atctgtaact
     4201 tgatgcttta gtgaaatgtt aagtacctac atatttttta acattttgta attcaaaact
     4261 ttttgttttg acattgttta tgaagagaga cttcatacac ttgccattta atatgctctt
     4321 ttatctaatt ttaaaagaaa ctctaaaaat ggtgtattat atggactaaa taaagaacat
     4381 gtgaatttta
//
LOCUS       XR_004347962            3343 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X9, misc_RNA.
ACCESSION   XR_004347962
VERSION     XR_004347962.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3343
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3343
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 24 Proteins, and
                     86% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746995"
     misc_RNA        1..3343
                     /gene="PPP2R5C"
                     /product="protein phosphatase 2 regulatory subunit
                     B'gamma, transcript variant X9"
                     /db_xref="GeneID:116746995"
ORIGIN      
        1 tctttttttt ttaaactaaa atggaggctg gtttcttgcc ttaaggagta cattgccttt
       61 cccgctgaag tctagatgtt gacatgtaat aaagcgggca gcaggatggt ggtggatgcg
      121 gccaactcca atgggccttt ccagcccgtg gcccttctcc atattcgaga tgttcctcct
      181 gctgatcaag agaagctttt tatccagaag ttacgtcagt gttgtgtcct ctttgacttt
      241 gtttccgatc cactaagtga cctaaagtgg aaggaagtaa aacgagctgc tttaagtgaa
      301 atggtagaat atatcaccca taatcggaat gtgatcacag agcctattta cccagaagta
      361 gtccatatgt ttgcagttaa catgtttcga acattaccac cttcctccaa ccctacggga
      421 gcagaatttg acccagagga agacgagcca acgttagaag cagcctggcc tcacctgcag
      481 cttgtttatg aatttttctt aagattttta gagtctccag atttccaacc taatatagcg
      541 aagaaatata ttgatcagaa gtttgtattg cagcttttag agctctttga cagtgaagat
      601 cctcgcgaga gagattttct taaaactacc cttcaccgaa tctatggaaa attcttaggc
      661 ttaagagctt acatcagaaa acagataaat aatatatttt atagatttat ttatgaaaca
      721 gagcatcaca atggcatagc agaattactg gaaatactgg gaagtataat taatggattt
      781 gccttaccac tgaaagaaga gcacaagatt ttcttattga aggtgttatt acctttgcac
      841 aaagtgaagt ctctgagcgt ctaccatcct cagctggcat actgtgtagt gcagttttta
      901 gaaaaggaca gcaccctcac tgaaccggtg gtgatggcac ttctcaagta ctggccaaag
      961 actcacagcc caaaagaagt catgttccta aatgaactag aagagattct agacgtcatt
     1021 gaaccatcag agtttgtgaa gatcatggag cctctcttcc ggcagttagc caagtgtgtc
     1081 tccagtcccc actttcaggt ggcagagcga gcgctgtatt actggaataa cgagtacatc
     1141 atgagtctca tcagcgacaa cgcagcaaag attctgccca tcatgtttcc atccttgtac
     1201 cgcaactcaa agacccactg gaacaagacg atacatggct tgatatacaa cgcgctgaaa
     1261 ctcttcatgg agatgaacca aaaactattt gatgactgca cccagcagtt taaagcagag
     1321 aaactgaaag agaagctaaa aatgaaagaa cgagaagaag cgtgggttaa aatagaaaac
     1381 ctagccaaag cgaaccccca ggcacagaag gacctgaaga aggaccggcc cctggtgcgc
     1441 cgcaagtccg agctgcccca ggacctgcac accaagagtg ccctggaggc ccacggccgt
     1501 gctgacgagc tggtccccca ggacgggcgc tagccccgac gccgtgcgcg cgccagccct
     1561 gctccggtct gtagaaagta cacgctctgt gtgccataca aatcagttac actcaagtca
     1621 aagctttctc caaccccgtt ccgtaggcaa taacatcctt ccgcctcagc tcgagactag
     1681 gagttcaaac aatggtgacc acccagggcc acatgccgcc catggtgtcc cctgcacggt
     1741 cccaagtaag ctggttttcc aaaatcagag ctaaggaaag caccctagtc atcatcttca
     1801 cgttctcccc aaatggaatt tgcgatcatt taagataggt ggtccaatga taatatcagt
     1861 gtttttcaaa tcaaaggagc actttaaaaa agtattacct actttttaag actttacaac
     1921 ccttgagatt gtttccacgt gattgttaat gccagcagtt tctttctggg gttttttggt
     1981 ttgtttttgt tttttaatct catggaagtg gttccttgct gtcatcgttc caacaccact
     2041 caactgggaa agtgacacga cagcccccgg ccgctgcctc ttcctaaggt actgctttac
     2101 tttgaccaat accatgcgta ccacaccctg ctgcttctgt gtatcgctaa agccatattt
     2161 ccaagtctgc ggtccaggac caggatccgg gagtgggcac gtaggagaaa tttgttttaa
     2221 aaagagcttt ctcttgactg gaattggaat tttaaagtga tgtgtctgtg ttttactctt
     2281 tgcagaatga tttctctcta cttacacgtt gttgcccttg aacaaggctc ttcaattaga
     2341 taaaattata ttctctgaga attccacatt ttgtagaaaa ttaggacgag atcattttga
     2401 gtgaggccag ctctcgggcc tgatgcaggc caccgctgcc tttgggcaaa agtagcagga
     2461 acagcgccgt gggcagggca ggcacccccc tccccgcagt gtggccctga gggcttcgtg
     2521 gaggcggcgg cagcgatggc ttccaaggag tctctttctg ttgaaaagag cgcacgtaat
     2581 agatgcctcg taaggaaaat acagcgtctt gagttttcat cggtcttcaa tgctgctaaa
     2641 tatttcagac ttccttgcat gtattcagct ttttgttttt gatggaacag cacgaggaga
     2701 aaaatcttta aacttaatgc tttgttcttt attactctcc gggtggccag tattttgact
     2761 tacttatcct gcttgaaagc tatttgagat gcgtactgct gctctaaacc agtgattcta
     2821 gtttcttctg tctctggcat aagattctat aacttgatgt taaatgtctt gatgcatcaa
     2881 aggtaaaacg tggcttcttt caggatctgt ttttcagttg aggtcttggg aatccactca
     2941 gacgttgtga gaagcagacg tggttccctg tgcagctgtg gaaatggcaa acacaggact
     3001 tccctgctgg cgcaatgtta aagaatccgc ctgccaacac gggacacggg ttcgatccct
     3061 ggtccgggaa gatcccacat gccgcggagc agctaagccc gtgcgccacg actactgagc
     3121 ctgcgctcta gagcccgcga gccacaacta ctgaagcccg cgcgcctaga gcccgtgctc
     3181 cgcaacaaga gaagccaccg cagtgagaag cccgcgcacc acaacgaaga gcagcccccg
     3241 ctcgctgcag ctagagaaag cgcaggcgca gtaacgaaga cccaacgcgg ccaaaaataa
     3301 atataattaa ttaattaatt ttaacattaa aattttaaat ggc
//
LOCUS       XR_004347963            2528 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X10, misc_RNA.
ACCESSION   XR_004347963
VERSION     XR_004347963.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2528
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 24 Proteins, and
                     79% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746995"
     misc_RNA        1..2528
                     /gene="PPP2R5C"
                     /product="protein phosphatase 2 regulatory subunit
                     B'gamma, transcript variant X10"
                     /db_xref="GeneID:116746995"
ORIGIN      
        1 tctttttttt ttaaactaaa atggaggctg gtttcttgcc ttaaggagta cattgccttt
       61 cccgctgaag tctagatgtt gacatgtaat aaagcgggca gcaggatggt ggtggatgcg
      121 gccaactcca atgggccttt ccagcccgtg gcccttctcc atattcgaga tgttcctcct
      181 gctgatcaag agaagctttt tatccagaag ttacgtcagt gttgtgtcct ctttgacttt
      241 gtttccgatc cactaagtga cctaaagtgg aaggaagtaa aacgagctgc tttaagtgaa
      301 atggtagaat atatcaccca taatcggaat gtgatcacag agcctattta cccagaagta
      361 gtccatatgt ttgcagttaa catgtttcga acattaccac cttcctccaa ccctacggga
      421 gcagaatttg acccagagga agacgagcca acgttagaag cagcctggcc tcacctgcag
      481 cttgtttatg aatttttctt aagattttta gagtctccag atttccaacc taatatagcg
      541 aagaaatata ttgatcagaa gtttgtattg cagcttttag agctctttga cagtgaagat
      601 cctcgcgaga gagattttct taaaactacc cttcaccgaa tctatggaaa attcttaggc
      661 ttaagagctt acatcagaaa acagataaat aatatatttt atagatttat ttatgaaaca
      721 gagcatcaca atggcatagc agaattactg gaaatactgg gaagtataat taatggattt
      781 gccttaccac tgaaagaaga gcacaagatt ttcttattga aggtgttatt acctttgcac
      841 aaagtgaagt ctctgagcgt ctaccatcct cagctggcat actgtgtagt gcagttttta
      901 gaaaaggaca gcaccctcac tgaaccggtg gtgatggcac ttctcaagta ctggccaaag
      961 actcacagcc caaaagaagt catgttccta aatgaactag aagagattct agacgtcatt
     1021 gaaccatcag agtttgtgaa gatcatggag cctctcttcc ggcagttagc caagtgtgtc
     1081 tccagtcccc actttcaggt ggcagagcga gcgctgtatt actggaataa cgagtacatc
     1141 atgagtctca tcagcgacaa cgcagcaaag attctgccca tcatgtttcc atccttgtac
     1201 cgcaactcaa agacccactg gaacaagacg atacatggct tgatatacaa cgcgctgaaa
     1261 ctcttcatgg agatgaacca aaaactattt gatgactgca cccagcagtt taaagcagag
     1321 aaactgaaag agaagctaaa aatgaaagaa cgagaagaag cgtgggttaa aatagaaaac
     1381 ctagccaaag cgaaccccca ggcacagaag gacctgaaga aggaccggcc cctggtgcgc
     1441 cgcaagtccg agctgcccca ggacctgcac accaagagtg ccctggaggc ccacggccgt
     1501 gctgacgagc tggtccccca ggacgggcgc tagccccgac gccgtgcgcg cgccagccct
     1561 gctccggtct gtagaaagta cacgctctgt gtgccataca aatcagttac actcaagtca
     1621 aagctttctc caaccccgtt ccgtaggcaa taacatcctt ccgcctcagc tcgagactag
     1681 gagttcaaac aatggtgacc acccagggcc acatgccgcc catggtgtcc cctgcacggt
     1741 cccaagtaag ctggttttcc aaaatcagag ctaaggaaag caccctagtc atcatcttca
     1801 cgttctcccc aaatggaatt tgcgatcatt taagataggt ggtccaatga taatatcagt
     1861 gtttttcaaa tcaaaggagc actttaaaaa agtattacct actttttaag actttacaac
     1921 ccttgagatt gtttccacgt gattgttaat gccagcagtt tctttctggg gttttttggt
     1981 ttgtttttgt tttttaatct catggaagtg gttccttgct gtcatcgttc caacaccact
     2041 caactgggaa agtgacacga cagcccccgg ccgctgcctc ttcctaagga tctgtttttc
     2101 agttgaggtc ttgggaatcc actcagacgt tgtgagaagc agacgtggtt ccctgtgcag
     2161 ctgtggaaat ggcaaacaca ggacttccct gctggcgcaa tgttaaagaa tccgcctgcc
     2221 aacacgggac acgggttcga tccctggtcc gggaagatcc cacatgccgc ggagcagcta
     2281 agcccgtgcg ccacgactac tgagcctgcg ctctagagcc cgcgagccac aactactgaa
     2341 gcccgcgcgc ctagagcccg tgctccgcaa caagagaagc caccgcagtg agaagcccgc
     2401 gcaccacaac gaagagcagc ccccgctcgc tgcagctaga gaaagcgcag gcgcagtaac
     2461 gaagacccaa cgcggccaaa aataaatata attaattaat taattttaac attaaaattt
     2521 taaatggc
//
LOCUS       XM_032618870            1927 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X11, mRNA.
ACCESSION   XM_032618870
VERSION     XM_032618870.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1927
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 24 Proteins, and
                     77% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116746995"
     CDS             74..1531
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X8"
                     /protein_id="XP_032474761.1"
                     /db_xref="GeneID:116746995"
                     /translation="MLTCNKAGSRMVVDAANSNGPFQPVALLHIRDVPPADQEKLFIQ
                     KLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVN
                     MFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYID
                     QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHH
                     NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE
                     KDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKC
                     VSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYN
                     ALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQAQKDLKKD
                     RPLVRRKSELPQDLHTKSALEAHGRADELVPQDGR"
     misc_feature    173..1384
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 tttttttttt aaactaaaat ggaggctggt ttcttgcctt aaggagtaca ttgcctttcc
       61 cgctgaagtc tagatgttga catgtaataa agcgggcagc aggatggtgg tggatgcggc
      121 caactccaat gggcctttcc agcccgtggc ccttctccat attcgagatg ttcctcctgc
      181 tgatcaagag aagcttttta tccagaagtt acgtcagtgt tgtgtcctct ttgactttgt
      241 ttccgatcca ctaagtgacc taaagtggaa ggaagtaaaa cgagctgctt taagtgaaat
      301 ggtagaatat atcacccata atcggaatgt gatcacagag cctatttacc cagaagtagt
      361 ccatatgttt gcagttaaca tgtttcgaac attaccacct tcctccaacc ctacgggagc
      421 agaatttgac ccagaggaag acgagccaac gttagaagca gcctggcctc acctgcagct
      481 tgtttatgaa tttttcttaa gatttttaga gtctccagat ttccaaccta atatagcgaa
      541 gaaatatatt gatcagaagt ttgtattgca gcttttagag ctctttgaca gtgaagatcc
      601 tcgcgagaga gattttctta aaactaccct tcaccgaatc tatggaaaat tcttaggctt
      661 aagagcttac atcagaaaac agataaataa tatattttat agatttattt atgaaacaga
      721 gcatcacaat ggcatagcag aattactgga aatactggga agtataatta atggatttgc
      781 cttaccactg aaagaagagc acaagatttt cttattgaag gtgttattac ctttgcacaa
      841 agtgaagtct ctgagcgtct accatcctca gctggcatac tgtgtagtgc agtttttaga
      901 aaaggacagc accctcactg aaccggtggt gatggcactt ctcaagtact ggccaaagac
      961 tcacagccca aaagaagtca tgttcctaaa tgaactagaa gagattctag acgtcattga
     1021 accatcagag tttgtgaaga tcatggagcc tctcttccgg cagttagcca agtgtgtctc
     1081 cagtccccac tttcaggtgg cagagcgagc gctgtattac tggaataacg agtacatcat
     1141 gagtctcatc agcgacaacg cagcaaagat tctgcccatc atgtttccat ccttgtaccg
     1201 caactcaaag acccactgga acaagacgat acatggcttg atatacaacg cgctgaaact
     1261 cttcatggag atgaaccaaa aactatttga tgactgcacc cagcagttta aagcagagaa
     1321 actgaaagag aagctaaaaa tgaaagaacg agaagaagcg tgggttaaaa tagaaaacct
     1381 agccaaagcg aacccccagg cacagaagga cctgaagaag gaccggcccc tggtgcgccg
     1441 caagtccgag ctgccccagg acctgcacac caagagtgcc ctggaggccc acggccgtgc
     1501 tgacgagctg gtcccccagg acgggcgcta gccccgacgc cgtgcgcgcg ccagccctgc
     1561 tccggaaatg gcaaacacag gacttccctg ctggcgcaat gttaaagaat ccgcctgcca
     1621 acacgggaca cgggttcgat ccctggtccg ggaagatccc acatgccgcg gagcagctaa
     1681 gcccgtgcgc cacgactact gagcctgcgc tctagagccc gcgagccaca actactgaag
     1741 cccgcgcgcc tagagcccgt gctccgcaac aagagaagcc accgcagtga gaagcccgcg
     1801 caccacaacg aagagcagcc cccgctcgct gcagctagag aaagcgcagg cgcagtaacg
     1861 aagacccaac gcggccaaaa ataaatataa ttaattaatt aattttaaca ttaaaatttt
     1921 aaatggc
//
LOCUS       XM_032618875            4304 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X12, mRNA.
ACCESSION   XM_032618875
VERSION     XM_032618875.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4304
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4304
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             326..1675
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X9"
                     /protein_id="XP_032474766.1"
                     /db_xref="GeneID:116746995"
                     /translation="MVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFD
                     PEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPR
                     ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF
                     ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYW
                     PKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN
                     NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCT
                     QQFKAEKLKEKLKMKEREEAWVKIENLAKANPQYAVCSQASTMSLPVAVETDGPLFED
                     VQMLRKTVNEEARQAQKDLKKDRPLVRRKSELPQDLHTKSALEAHGRADELVPQDGR"
     misc_feature    326..1411
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 gagaggttcc cgggcttgcc taaggtcaga aggaagagct cttgggtttt ctgactcacg
       61 actctgggct catgcctctc tggatgcgca cggggccgct ctcacaggct gctttatcac
      121 agagatctag ccgcgcagta ctttctgctc tcagtttctc acagcgctgt agagtgtggt
      181 gcagctgaaa ccagatgttc ctcctgctga tcaagagaag ctttttatcc agaagttacg
      241 tcagtgttgt gtcctctttg actttgtttc cgatccacta agtgacctaa agtggaagga
      301 agtaaaacga gctgctttaa gtgaaatggt agaatatatc acccataatc ggaatgtgat
      361 cacagagcct atttacccag aagtagtcca tatgtttgca gttaacatgt ttcgaacatt
      421 accaccttcc tccaacccta cgggagcaga atttgaccca gaggaagacg agccaacgtt
      481 agaagcagcc tggcctcacc tgcagcttgt ttatgaattt ttcttaagat ttttagagtc
      541 tccagatttc caacctaata tagcgaagaa atatattgat cagaagtttg tattgcagct
      601 tttagagctc tttgacagtg aagatcctcg cgagagagat tttcttaaaa ctacccttca
      661 ccgaatctat ggaaaattct taggcttaag agcttacatc agaaaacaga taaataatat
      721 attttataga tttatttatg aaacagagca tcacaatggc atagcagaat tactggaaat
      781 actgggaagt ataattaatg gatttgcctt accactgaaa gaagagcaca agattttctt
      841 attgaaggtg ttattacctt tgcacaaagt gaagtctctg agcgtctacc atcctcagct
      901 ggcatactgt gtagtgcagt ttttagaaaa ggacagcacc ctcactgaac cggtggtgat
      961 ggcacttctc aagtactggc caaagactca cagcccaaaa gaagtcatgt tcctaaatga
     1021 actagaagag attctagacg tcattgaacc atcagagttt gtgaagatca tggagcctct
     1081 cttccggcag ttagccaagt gtgtctccag tccccacttt caggtggcag agcgagcgct
     1141 gtattactgg aataacgagt acatcatgag tctcatcagc gacaacgcag caaagattct
     1201 gcccatcatg tttccatcct tgtaccgcaa ctcaaagacc cactggaaca agacgataca
     1261 tggcttgata tacaacgcgc tgaaactctt catggagatg aaccaaaaac tatttgatga
     1321 ctgcacccag cagtttaaag cagagaaact gaaagagaag ctaaaaatga aagaacgaga
     1381 agaagcgtgg gttaaaatag aaaacctagc caaagcgaac ccccagtacg cagtgtgtag
     1441 tcaagcgagc accatgagcc ttccggtggc agtggagaca gatgggcctt tatttgaaga
     1501 tgtgcagatg ctgagaaaga cagtgaacga agaggctcgc caggcacaga aggacctgaa
     1561 gaaggaccgg cccctggtgc gccgcaagtc cgagctgccc caggacctgc acaccaagag
     1621 tgccctggag gcccacggcc gtgctgacga gctggtcccc caggacgggc gctagccccg
     1681 acgccgtgcg cgcgccagcc ctgctccggt ctgtagaaag tacacgctct gtgtgccata
     1741 caaatcagtt acactcaagt caaagctttc tccaaccccg ttccgtaggc aataacatcc
     1801 ttccgcctca gctcgagact aggagttcaa acaatggtga ccacccaggg ccacatgccg
     1861 cccatggtgt cccctgcacg gtcccaagta agctggtttt ccaaaatcag agctaaggaa
     1921 agcaccctag tcatcatctt cacgttctcc ccaaatggaa tttgcgatca tttaagatag
     1981 gtggtccaat gataatatca gtgtttttca aatcaaagga gcactttaaa aaagtattac
     2041 ctacttttta agactttaca acccttgaga ttgtttccac gtgattgtta atgccagcag
     2101 tttctttctg gggttttttg gtttgttttt gttttttaat ctcatggaag tggttccttg
     2161 ctgtcatcgt tccaacacca ctcaactggg aaagtgacac gacagccccc ggccgctgcc
     2221 tcttcctaag gtactgcttt actttgacca ataccatgcg taccacaccc tgctgcttct
     2281 gtgtatcgct aaagccatat ttccaagtct gcggtccagg accaggatcc gggagtgggc
     2341 acgtaggaga aatttgtttt aaaaagagct ttctcttgac tggaattgga attttaaagt
     2401 gatgtgtctg tgttttactc tttgcagaat gatttctctc tacttacacg ttgttgccct
     2461 tgaacaaggc tcttcaatta gataaaatta tattctctga gaattccaca ttttgtagaa
     2521 aattaggacg agatcatttt gagtgaggcc agctctcggg cctgatgcag gccaccgctg
     2581 cctttgggca aaagtagcag gaacagcgcc gtgggcaggg caggcacccc cctccccgca
     2641 gtgtggccct gagggcttcg tggaggcggc ggcagcgatg gcttccaagg agtctctttc
     2701 tgttgaaaag agcgcacgta atagatgcct cgtaaggaaa atacagcgtc ttgagttttc
     2761 atcggtcttc aatgctgcta aatatttcag acttccttgc atgtattcag ctttttgttt
     2821 ttgatggaac agcacgagga gaaaaatctt taaacttaat gctttgttct ttattactct
     2881 ccgggtggcc agtattttga cttacttatc ctgcttgaaa gctatttgag atgcgtactg
     2941 ctgctctaaa ccagtgattc tagtttcttc tgtctctggc ataagattct ataacttgat
     3001 gttaaatgtc ttgatgcatc aaaggtaaaa cgtggcttct ttcaggatct gtttttcagt
     3061 tgaggtcttg ggaatccact cagacgttgt gagaagcaga cgtggttccc tgtgcagctg
     3121 tggtacgtgc tgccccttgg tttcacttaa atcctttgat gatgtttatt tccttgtttc
     3181 ctgtaggaaa atcatttgga gggaggggat ttctggcgtt caaagcaagt gctagattag
     3241 aagctgcccc agctgaaagg ggaggaaccc tctttgtgag caggaagtat ccatccactt
     3301 caccatgatg aaatttatca tttaaaaaaa gtttagatgc cttctccttt tgagggaaaa
     3361 agggtgcttt ttattgtata aagcagcgtc ttatgtattt tgataaacca ttgtttgaac
     3421 ttccgtcttt agctgataga ttctcagata tacttggttt ggatgttcgc agttatgttt
     3481 gtgacagagg tttctgggaa gcctctcctc ttgccctagg gaaaaagcag aataccagtg
     3541 tttgggtgat gtggaaagct caacgtataa gaacatcttt ttgtctaggt tttacttctg
     3601 ctctttattg aagacaaaca ttcaccaaaa agggaggaaa aaaaaagttt tgagagaaac
     3661 taattttctt tgacaagagt attatttaat attttgggct atgaaagttt tcctagttag
     3721 tactcagatt ccctgtgcta attgtccaac tgacatatta ttacatagat acactgttta
     3781 ttctgtacca aactgatttc agaagtcctg cattgaaaat aaactggtga ctgtttttct
     3841 tcagaaagtt ctgcgtttgg catcttcact ctttctgaag tgtatctgta catcagaaat
     3901 gtcactattc cgagtgtctt tttagtgcag ctttagtatg gcttcctttt aatattgtac
     3961 atacattgta cctttgtttt atggtaatga gtaataaaaa tgtagacttc atattttgta
     4021 caaaatgtcc tatgtacaga ataaaaaaag ttcatagaaa cagcaaaaat aggtaagtgg
     4081 cacaattatt tttctttaga aaatatctgt aacttgatgc tttagtgaaa tgttaagtac
     4141 ctacatattt tttaacattt tgtaattcaa aactttttgt tttgacattg tttatgaaga
     4201 gagacttcat acacttgcca tttaatatgc tcttttatct aattttaaaa gaaactctaa
     4261 aaatggtgta ttatatggac taaataaaga acatgtgaat ttta
//
LOCUS       XM_032618879            4175 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X13, mRNA.
ACCESSION   XM_032618879
VERSION     XM_032618879.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4175
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4175
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 23 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             197..1546
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X9"
                     /protein_id="XP_032474770.1"
                     /db_xref="GeneID:116746995"
                     /translation="MVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFD
                     PEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPR
                     ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF
                     ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYW
                     PKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN
                     NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCT
                     QQFKAEKLKEKLKMKEREEAWVKIENLAKANPQYAVCSQASTMSLPVAVETDGPLFED
                     VQMLRKTVNEEARQAQKDLKKDRPLVRRKSELPQDLHTKSALEAHGRADELVPQDGR"
     misc_feature    197..1282
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 cggcagagtg tgttttcaga aatttccagg gcaggagggg gagtttaaga aggaagttga
       61 ggaagatgtt cctcctgctg atcaagagaa gctttttatc cagaagttac gtcagtgttg
      121 tgtcctcttt gactttgttt ccgatccact aagtgaccta aagtggaagg aagtaaaacg
      181 agctgcttta agtgaaatgg tagaatatat cacccataat cggaatgtga tcacagagcc
      241 tatttaccca gaagtagtcc atatgtttgc agttaacatg tttcgaacat taccaccttc
      301 ctccaaccct acgggagcag aatttgaccc agaggaagac gagccaacgt tagaagcagc
      361 ctggcctcac ctgcagcttg tttatgaatt tttcttaaga tttttagagt ctccagattt
      421 ccaacctaat atagcgaaga aatatattga tcagaagttt gtattgcagc ttttagagct
      481 ctttgacagt gaagatcctc gcgagagaga ttttcttaaa actacccttc accgaatcta
      541 tggaaaattc ttaggcttaa gagcttacat cagaaaacag ataaataata tattttatag
      601 atttatttat gaaacagagc atcacaatgg catagcagaa ttactggaaa tactgggaag
      661 tataattaat ggatttgcct taccactgaa agaagagcac aagattttct tattgaaggt
      721 gttattacct ttgcacaaag tgaagtctct gagcgtctac catcctcagc tggcatactg
      781 tgtagtgcag tttttagaaa aggacagcac cctcactgaa ccggtggtga tggcacttct
      841 caagtactgg ccaaagactc acagcccaaa agaagtcatg ttcctaaatg aactagaaga
      901 gattctagac gtcattgaac catcagagtt tgtgaagatc atggagcctc tcttccggca
      961 gttagccaag tgtgtctcca gtccccactt tcaggtggca gagcgagcgc tgtattactg
     1021 gaataacgag tacatcatga gtctcatcag cgacaacgca gcaaagattc tgcccatcat
     1081 gtttccatcc ttgtaccgca actcaaagac ccactggaac aagacgatac atggcttgat
     1141 atacaacgcg ctgaaactct tcatggagat gaaccaaaaa ctatttgatg actgcaccca
     1201 gcagtttaaa gcagagaaac tgaaagagaa gctaaaaatg aaagaacgag aagaagcgtg
     1261 ggttaaaata gaaaacctag ccaaagcgaa cccccagtac gcagtgtgta gtcaagcgag
     1321 caccatgagc cttccggtgg cagtggagac agatgggcct ttatttgaag atgtgcagat
     1381 gctgagaaag acagtgaacg aagaggctcg ccaggcacag aaggacctga agaaggaccg
     1441 gcccctggtg cgccgcaagt ccgagctgcc ccaggacctg cacaccaaga gtgccctgga
     1501 ggcccacggc cgtgctgacg agctggtccc ccaggacggg cgctagcccc gacgccgtgc
     1561 gcgcgccagc cctgctccgg tctgtagaaa gtacacgctc tgtgtgccat acaaatcagt
     1621 tacactcaag tcaaagcttt ctccaacccc gttccgtagg caataacatc cttccgcctc
     1681 agctcgagac taggagttca aacaatggtg accacccagg gccacatgcc gcccatggtg
     1741 tcccctgcac ggtcccaagt aagctggttt tccaaaatca gagctaagga aagcacccta
     1801 gtcatcatct tcacgttctc cccaaatgga atttgcgatc atttaagata ggtggtccaa
     1861 tgataatatc agtgtttttc aaatcaaagg agcactttaa aaaagtatta cctacttttt
     1921 aagactttac aacccttgag attgtttcca cgtgattgtt aatgccagca gtttctttct
     1981 ggggtttttt ggtttgtttt tgttttttaa tctcatggaa gtggttcctt gctgtcatcg
     2041 ttccaacacc actcaactgg gaaagtgaca cgacagcccc cggccgctgc ctcttcctaa
     2101 ggtactgctt tactttgacc aataccatgc gtaccacacc ctgctgcttc tgtgtatcgc
     2161 taaagccata tttccaagtc tgcggtccag gaccaggatc cgggagtggg cacgtaggag
     2221 aaatttgttt taaaaagagc tttctcttga ctggaattgg aattttaaag tgatgtgtct
     2281 gtgttttact ctttgcagaa tgatttctct ctacttacac gttgttgccc ttgaacaagg
     2341 ctcttcaatt agataaaatt atattctctg agaattccac attttgtaga aaattaggac
     2401 gagatcattt tgagtgaggc cagctctcgg gcctgatgca ggccaccgct gcctttgggc
     2461 aaaagtagca ggaacagcgc cgtgggcagg gcaggcaccc ccctccccgc agtgtggccc
     2521 tgagggcttc gtggaggcgg cggcagcgat ggcttccaag gagtctcttt ctgttgaaaa
     2581 gagcgcacgt aatagatgcc tcgtaaggaa aatacagcgt cttgagtttt catcggtctt
     2641 caatgctgct aaatatttca gacttccttg catgtattca gctttttgtt tttgatggaa
     2701 cagcacgagg agaaaaatct ttaaacttaa tgctttgttc tttattactc tccgggtggc
     2761 cagtattttg acttacttat cctgcttgaa agctatttga gatgcgtact gctgctctaa
     2821 accagtgatt ctagtttctt ctgtctctgg cataagattc tataacttga tgttaaatgt
     2881 cttgatgcat caaaggtaaa acgtggcttc tttcaggatc tgtttttcag ttgaggtctt
     2941 gggaatccac tcagacgttg tgagaagcag acgtggttcc ctgtgcagct gtggtacgtg
     3001 ctgccccttg gtttcactta aatcctttga tgatgtttat ttccttgttt cctgtaggaa
     3061 aatcatttgg agggagggga tttctggcgt tcaaagcaag tgctagatta gaagctgccc
     3121 cagctgaaag gggaggaacc ctctttgtga gcaggaagta tccatccact tcaccatgat
     3181 gaaatttatc atttaaaaaa agtttagatg ccttctcctt ttgagggaaa aagggtgctt
     3241 tttattgtat aaagcagcgt cttatgtatt ttgataaacc attgtttgaa cttccgtctt
     3301 tagctgatag attctcagat atacttggtt tggatgttcg cagttatgtt tgtgacagag
     3361 gtttctggga agcctctcct cttgccctag ggaaaaagca gaataccagt gtttgggtga
     3421 tgtggaaagc tcaacgtata agaacatctt tttgtctagg ttttacttct gctctttatt
     3481 gaagacaaac attcaccaaa aagggaggaa aaaaaaagtt ttgagagaaa ctaattttct
     3541 ttgacaagag tattatttaa tattttgggc tatgaaagtt ttcctagtta gtactcagat
     3601 tccctgtgct aattgtccaa ctgacatatt attacataga tacactgttt attctgtacc
     3661 aaactgattt cagaagtcct gcattgaaaa taaactggtg actgtttttc ttcagaaagt
     3721 tctgcgtttg gcatcttcac tctttctgaa gtgtatctgt acatcagaaa tgtcactatt
     3781 ccgagtgtct ttttagtgca gctttagtat ggcttccttt taatattgta catacattgt
     3841 acctttgttt tatggtaatg agtaataaaa atgtagactt catattttgt acaaaatgtc
     3901 ctatgtacag aataaaaaaa gttcatagaa acagcaaaaa taggtaagtg gcacaattat
     3961 ttttctttag aaaatatctg taacttgatg ctttagtgaa atgttaagta cctacatatt
     4021 ttttaacatt ttgtaattca aaactttttg ttttgacatt gtttatgaag agagacttca
     4081 tacacttgcc atttaatatg ctcttttatc taattttaaa agaaactcta aaaatggtgt
     4141 attatatgga ctaaataaag aacatgtgaa tttta
//
LOCUS       XM_032618883            4133 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus protein phosphatase 2 regulatory subunit
            B'gamma (PPP2R5C), transcript variant X14, mRNA.
ACCESSION   XM_032618883
VERSION     XM_032618883.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4133
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4133
                     /gene="PPP2R5C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 23 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116746995"
     CDS             155..1504
                     /gene="PPP2R5C"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A 56 kDa
                     regulatory subunit gamma isoform isoform X9"
                     /protein_id="XP_032474774.1"
                     /db_xref="GeneID:116746995"
                     /translation="MVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFD
                     PEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPR
                     ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF
                     ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYW
                     PKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN
                     NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCT
                     QQFKAEKLKEKLKMKEREEAWVKIENLAKANPQYAVCSQASTMSLPVAVETDGPLFED
                     VQMLRKTVNEEARQAQKDLKKDRPLVRRKSELPQDLHTKSALEAHGRADELVPQDGR"
     misc_feature    155..1240
                     /gene="PPP2R5C"
                     /note="Protein phosphatase 2A regulatory B subunit (B56
                     family); Region: B56; pfam01603"
                     /db_xref="CDD:460264"
ORIGIN      
        1 tctttctttc tcgtgtgtgg atgatgttcc tcctgctgat caagagaagc tttttatcca
       61 gaagttacgt cagtgttgtg tcctctttga ctttgtttcc gatccactaa gtgacctaaa
      121 gtggaaggaa gtaaaacgag ctgctttaag tgaaatggta gaatatatca cccataatcg
      181 gaatgtgatc acagagccta tttacccaga agtagtccat atgtttgcag ttaacatgtt
      241 tcgaacatta ccaccttcct ccaaccctac gggagcagaa tttgacccag aggaagacga
      301 gccaacgtta gaagcagcct ggcctcacct gcagcttgtt tatgaatttt tcttaagatt
      361 tttagagtct ccagatttcc aacctaatat agcgaagaaa tatattgatc agaagtttgt
      421 attgcagctt ttagagctct ttgacagtga agatcctcgc gagagagatt ttcttaaaac
      481 tacccttcac cgaatctatg gaaaattctt aggcttaaga gcttacatca gaaaacagat
      541 aaataatata ttttatagat ttatttatga aacagagcat cacaatggca tagcagaatt
      601 actggaaata ctgggaagta taattaatgg atttgcctta ccactgaaag aagagcacaa
      661 gattttctta ttgaaggtgt tattaccttt gcacaaagtg aagtctctga gcgtctacca
      721 tcctcagctg gcatactgtg tagtgcagtt tttagaaaag gacagcaccc tcactgaacc
      781 ggtggtgatg gcacttctca agtactggcc aaagactcac agcccaaaag aagtcatgtt
      841 cctaaatgaa ctagaagaga ttctagacgt cattgaacca tcagagtttg tgaagatcat
      901 ggagcctctc ttccggcagt tagccaagtg tgtctccagt ccccactttc aggtggcaga
      961 gcgagcgctg tattactgga ataacgagta catcatgagt ctcatcagcg acaacgcagc
     1021 aaagattctg cccatcatgt ttccatcctt gtaccgcaac tcaaagaccc actggaacaa
     1081 gacgatacat ggcttgatat acaacgcgct gaaactcttc atggagatga accaaaaact
     1141 atttgatgac tgcacccagc agtttaaagc agagaaactg aaagagaagc taaaaatgaa
     1201 agaacgagaa gaagcgtggg ttaaaataga aaacctagcc aaagcgaacc cccagtacgc
     1261 agtgtgtagt caagcgagca ccatgagcct tccggtggca gtggagacag atgggccttt
     1321 atttgaagat gtgcagatgc tgagaaagac agtgaacgaa gaggctcgcc aggcacagaa
     1381 ggacctgaag aaggaccggc ccctggtgcg ccgcaagtcc gagctgcccc aggacctgca
     1441 caccaagagt gccctggagg cccacggccg tgctgacgag ctggtccccc aggacgggcg
     1501 ctagccccga cgccgtgcgc gcgccagccc tgctccggtc tgtagaaagt acacgctctg
     1561 tgtgccatac aaatcagtta cactcaagtc aaagctttct ccaaccccgt tccgtaggca
     1621 ataacatcct tccgcctcag ctcgagacta ggagttcaaa caatggtgac cacccagggc
     1681 cacatgccgc ccatggtgtc ccctgcacgg tcccaagtaa gctggttttc caaaatcaga
     1741 gctaaggaaa gcaccctagt catcatcttc acgttctccc caaatggaat ttgcgatcat
     1801 ttaagatagg tggtccaatg ataatatcag tgtttttcaa atcaaaggag cactttaaaa
     1861 aagtattacc tactttttaa gactttacaa cccttgagat tgtttccacg tgattgttaa
     1921 tgccagcagt ttctttctgg ggttttttgg tttgtttttg ttttttaatc tcatggaagt
     1981 ggttccttgc tgtcatcgtt ccaacaccac tcaactggga aagtgacacg acagcccccg
     2041 gccgctgcct cttcctaagg tactgcttta ctttgaccaa taccatgcgt accacaccct
     2101 gctgcttctg tgtatcgcta aagccatatt tccaagtctg cggtccagga ccaggatccg
     2161 ggagtgggca cgtaggagaa atttgtttta aaaagagctt tctcttgact ggaattggaa
     2221 ttttaaagtg atgtgtctgt gttttactct ttgcagaatg atttctctct acttacacgt
     2281 tgttgccctt gaacaaggct cttcaattag ataaaattat attctctgag aattccacat
     2341 tttgtagaaa attaggacga gatcattttg agtgaggcca gctctcgggc ctgatgcagg
     2401 ccaccgctgc ctttgggcaa aagtagcagg aacagcgccg tgggcagggc aggcaccccc
     2461 ctccccgcag tgtggccctg agggcttcgt ggaggcggcg gcagcgatgg cttccaagga
     2521 gtctctttct gttgaaaaga gcgcacgtaa tagatgcctc gtaaggaaaa tacagcgtct
     2581 tgagttttca tcggtcttca atgctgctaa atatttcaga cttccttgca tgtattcagc
     2641 tttttgtttt tgatggaaca gcacgaggag aaaaatcttt aaacttaatg ctttgttctt
     2701 tattactctc cgggtggcca gtattttgac ttacttatcc tgcttgaaag ctatttgaga
     2761 tgcgtactgc tgctctaaac cagtgattct agtttcttct gtctctggca taagattcta
     2821 taacttgatg ttaaatgtct tgatgcatca aaggtaaaac gtggcttctt tcaggatctg
     2881 tttttcagtt gaggtcttgg gaatccactc agacgttgtg agaagcagac gtggttccct
     2941 gtgcagctgt ggtacgtgct gccccttggt ttcacttaaa tcctttgatg atgtttattt
     3001 ccttgtttcc tgtaggaaaa tcatttggag ggaggggatt tctggcgttc aaagcaagtg
     3061 ctagattaga agctgcccca gctgaaaggg gaggaaccct ctttgtgagc aggaagtatc
     3121 catccacttc accatgatga aatttatcat ttaaaaaaag tttagatgcc ttctcctttt
     3181 gagggaaaaa gggtgctttt tattgtataa agcagcgtct tatgtatttt gataaaccat
     3241 tgtttgaact tccgtcttta gctgatagat tctcagatat acttggtttg gatgttcgca
     3301 gttatgtttg tgacagaggt ttctgggaag cctctcctct tgccctaggg aaaaagcaga
     3361 ataccagtgt ttgggtgatg tggaaagctc aacgtataag aacatctttt tgtctaggtt
     3421 ttacttctgc tctttattga agacaaacat tcaccaaaaa gggaggaaaa aaaaagtttt
     3481 gagagaaact aattttcttt gacaagagta ttatttaata ttttgggcta tgaaagtttt
     3541 cctagttagt actcagattc cctgtgctaa ttgtccaact gacatattat tacatagata
     3601 cactgtttat tctgtaccaa actgatttca gaagtcctgc attgaaaata aactggtgac
     3661 tgtttttctt cagaaagttc tgcgtttggc atcttcactc tttctgaagt gtatctgtac
     3721 atcagaaatg tcactattcc gagtgtcttt ttagtgcagc tttagtatgg cttcctttta
     3781 atattgtaca tacattgtac ctttgtttta tggtaatgag taataaaaat gtagacttca
     3841 tattttgtac aaaatgtcct atgtacagaa taaaaaaagt tcatagaaac agcaaaaata
     3901 ggtaagtggc acaattattt ttctttagaa aatatctgta acttgatgct ttagtgaaat
     3961 gttaagtacc tacatatttt ttaacatttt gtaattcaaa actttttgtt ttgacattgt
     4021 ttatgaagag agacttcata cacttgccat ttaatatgct cttttatcta attttaaaag
     4081 aaactctaaa aatggtgtat tatatggact aaataaagaa catgtgaatt tta
//
LOCUS       XM_032618892            5514 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus SOS Ras/Rho guanine nucleotide exchange
            factor 2 (SOS2), mRNA.
ACCESSION   XM_032618892
VERSION     XM_032618892.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5514
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5514
                     /gene="SOS2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747062"
     CDS             316..4314
                     /gene="SOS2"
                     /codon_start=1
                     /product="son of sevenless homolog 2"
                     /protein_id="XP_032474783.1"
                     /db_xref="GeneID:116747062"
                     /translation="MQQAPQPYEFFSEENSPKWRGLLVSALRKVQEQVHPNLSANEES
                     LYYIEELIFQLLNKLCMAQPRTVQDVEERVQKTFPHPIDKWAIADAQSAIEKRKRRNP
                     LLLPVDKIHPSLKEVLGYKVDYHVSLYIVAVLEYISADILKLAGNYVFNIRHYEISQQ
                     DIKVSMCADKVLMDMFDQDDIGLVSLCEDEPSSSGELNYYDLVRTEIAEERQYLRELN
                     MIIKVFREAFLSDRDLFKPSDIEKIFSNILDIHELTVKLLGLIEDTVEMTDESSPHPL
                     AGSCFEDLAEEQAFDPYETLSQDILSPKFNEHFSKLMARPAVALHFQSIADGFKEAVR
                     YVLPRLMLVPVYHCWHYFELLKQLKACSEEHEDRECLNQAITALMNLQGSMDRIYKQY
                     SPRRRPGDPVCPFYNRQLRSKHLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGPLTR
                     IGAKHERHIFLFDGLMISCKPNHSQSRLPGYSSAEYRLKEKFVMRKIQICDKEDTCEC
                     KHAFELVSKDENSIVFAAKSAEEKNNWMAALISLHYRSTLDRMLDSVLLKEENEQPLR
                     LPSPEVYRFVVKDSEENIVFEDNLQSRSGIPIIKGGTVVKLIERLTYHMYADPNFVRT
                     FLTTYRSFCKPQELLSLLIERFEIPEPEPTEADKLAVEKGEQPISADLKRFRKEYVQP
                     VQLRILNVFRHWVEHHFYDFERDLELLERLESFISSVRGKAMKKWVESIAKIIKRKKQ
                     AQANGISHNITFESPPPPIEWHISRPGQFETFDLMTLHPIEIARQLTLLESDLYRKVQ
                     PSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVEAENFEERVAVLSRIIEI
                     LQVFQDLNNFNGVLEIVSAVNSVSVYRLDHTFEALQERKRKILDEAVELSQDHFKKYL
                     LKLKSINPPCVPFFGIYLTNILKTEEGNNDFLKKKGKDLINFSKRRKVAEITGEIQQY
                     QNQPYCLRIEPEMRRFFENLNPMGNASEKEFTDYLFNKSLEIEPRNCKQPPRFPRKST
                     FSLKSPGIRPNTGRHGSTSGTLRGHPTPLEREPCKISFSRIAETELESTVSAPTSPNT
                     PSTPPVSASSDLSVFLDVDLNSSCGSNSIFAPVLLPHSKSFFSSCGSLHKLSEEPLIP
                     PPLPPRKKFDHDASNSKGTMKSDDDPPAIPPRQPPPPKVKPRVPAPSGAFDGPLHSPP
                     PPPPRDPLPDTPPPVPLRPPEHFINCPFTLQPPPLGHLHRDPDWFRDVSTCPNSPNTP
                     PSTPSPRVPRRCYVLSSSQNNLAHPQAPPVPPRQNSSPHLPKLPPKTYKRELSHPPLY
                     RLPLLENAETPQ"
     misc_feature    367..600
                     /gene="SOS2"
                     /note="first histone-fold domain found in son of sevenless
                     homolog 1 (SOS-1) and similar proteins; Region:
                     HFD_SOS1_rpt1; cd22914"
                     /db_xref="CDD:467039"
     misc_feature    625..843
                     /gene="SOS2"
                     /note="second histone-fold domain found in son of
                     sevenless homolog 1 (SOS-1) and similar proteins; Region:
                     HFD_SOS1_rpt2; cd22915"
                     /db_xref="CDD:467040"
     misc_feature    order(928..930,940..942,1243..1245,1327..1332,1339..1344,
                     1348..1353,1360..1365,1372..1377,1384..1386,1459..1461,
                     1471..1473)
                     /gene="SOS2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    934..1476
                     /gene="SOS2"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    1624..1944
                     /gene="SOS2"
                     /note="Son of Sevenless (SOS) Pleckstrin homology (PH)
                     domain; Region: PH_SOS; cd01261"
                     /db_xref="CDD:269963"
     misc_feature    2098..2532
                     /gene="SOS2"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     GTPases; N-terminal motif; Region: RasGEFN; smart00229"
                     /db_xref="CDD:214571"
     misc_feature    order(2155..2157,2356..2358,2368..2373,2380..2382,
                     2389..2394,2491..2496,2503..2505,2524..2526)
                     /gene="SOS2"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:100121"
     misc_feature    2635..3354
                     /gene="SOS2"
                     /note="Guanine nucleotide exchange factor for Ras-like
                     small GTPases. Small GTP-binding proteins of the Ras
                     superfamily function as molecular switches in fundamental
                     events such as signal transduction, cytoskeleton dynamics
                     and intracellular trafficking; Region: RasGEF; cd00155"
                     /db_xref="CDD:238087"
     misc_feature    order(2734..2742,2770..2775,2779..2787,2791..2796,
                     2803..2808,2815..2817,2914..2916,2923..2928,2932..2940,
                     2944..2955,2959..2964,3022..3024,3040..3048,3055..3057,
                     3094..3102,3109..3117,3121..3129,3133..3144,3196..3198,
                     3208..3210,3328..3330,3337..3342)
                     /gene="SOS2"
                     /note="Ras interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238087"
ORIGIN      
        1 agaagcgggc cagctccgcc gggaaaggag gccaccgctt cggtcgcagc cgggggccgt
       61 ccgggttcac gggccgccgc gcttcctctg cggactctgc actaggcgag gccgcggggc
      121 cgaggaagcc gcccccggag cccccgcccg cccgccggcg ccgcctccga gccgcctcgg
      181 ccgtagccgc ggcccgggca ggaggaggcg gcggccggcg aggcgaggcg gcccgcgccc
      241 tgtctgtcag gccaccggcc cggcccgttt cggcccgcgg gccgaccccg atgcggaggc
      301 gctgccgccg gggccatgca gcaggcgccg cagccgtacg agttcttcag cgaagagaac
      361 agtccgaaat ggcggggact gttggtctcg gccctgcgga aggttcagga gcaagtacat
      421 cccaatctct cagctaatga agagtctctc tattatattg aagaactgat ttttcagctg
      481 cttaataaat tatgcatggc ccaaccaagg actgttcaag atgtggagga acgagttcaa
      541 aagacctttc ctcatccaat tgataaatgg gctattgctg atgcacagtc tgccatagag
      601 aaacgaaaac gaagaaatcc tctcttactg cctgtggaca aaatccatcc ttcattgaag
      661 gaagttttag ggtacaaagt ggactaccat gtgtccctat atattgtggc tgtactagag
      721 tatatctcag ctgatatttt gaaattggct ggtaattatg tttttaatat ccgacattat
      781 gaaatatccc aacaggacat taaagtgtca atgtgtgcag ataaggtttt gatggacatg
      841 tttgatcagg atgacatagg cttggtttct ctttgtgaag atgaacctag ttcttcaggt
      901 gaattaaact actatgacct tgtcagaacg gaaattgcag aagaaagaca gtatctacgg
      961 gaactaaata tgatcataaa agtgtttcga gaagcttttc tttctgacag agacctgttt
     1021 aaaccttctg atattgaaaa gattttcagt aacattttag atatacatga attgaccgtg
     1081 aaacttttag gtttaattga agacacagtt gaaatgactg atgaaagcag ccctcatccc
     1141 ttagctggaa gctgttttga agatttggca gaggaacaag catttgatcc ttatgaaaca
     1201 ttatcacagg atattctttc accaaaattt aatgaacatt tcagtaagtt gatggccaga
     1261 cctgcagtgg ctctacactt tcagtccatt gctgatggtt ttaaagaggc agttcgttat
     1321 gtccttccac gccttatgct ggtgccagta tatcattgtt ggcactattt tgaattatta
     1381 aagcaattga aagcatgtag tgaagagcat gaagacagag aatgtttgaa ccaagctatt
     1441 actgctctta tgaatctcca aggtagcatg gaccgaattt acaagcagta ttcacctaga
     1501 cgccgacctg gggatcctgt ttgccctttt tataatcgtc aattaagaag caagcacctg
     1561 gctattaaaa aaatgaatga aattcagaaa aacatagatg gatgggaagg caaagatatt
     1621 ggacagtgtt gtaatgaatt tattatggaa ggcccattga caagaattgg tgctaaacac
     1681 gaacggcata tttttctctt tgatggctta atgattagct gcaaacccaa tcatagccag
     1741 tcacgccttc caggatacag tagtgcagaa tacagattaa aagaaaaatt tgtcatgagg
     1801 aaaatacaaa tatgtgataa agaagatact tgtgagtgca agcatgcttt tgaattagta
     1861 tccaaagatg aaaacagcat agtatttgct gctaagtctg ctgaagagaa aaataattgg
     1921 atggcagcac ttatttctct tcattatcgt agtactctag atcgaatgct agattcagta
     1981 ttactgaagg aagaaaatga acaaccactt agattaccga gtcctgaagt gtatcgtttt
     2041 gtggtaaaag actctgagga aaacattgtt tttgaagaca acttgcaaag tagaagtgga
     2101 atccccatta ttaaaggagg aactgtggtg aaattaattg aaaggttaac atatcacatg
     2161 tatgcagatc ccaattttgt tcgcactttt cttactacgt atcgttcatt ttgtaaacca
     2221 caggaattgc taagcttact gattgaacga tttgaaattc cagagccaga acctactgaa
     2281 gcagataaat tggcagtaga gaaaggcgag cagccaatca gtgcagacct taaaaggttt
     2341 cgcaaggaat acgtccaacc agtacaactt aggatcttga atgtgtttcg gcactgggtt
     2401 gaacaccatt tttatgactt tgaaagagac ttggagttgc ttgaaagact agaatccttc
     2461 atttcaagtg taagagggaa agctatgaag aaatgggtag agtcaattgc taagatcatc
     2521 aagaggaaga aacaagctca ggcaaatgga ataagccata atattacctt tgaaagtcca
     2581 cctccaccaa ttgaatggca tatcagcaga ccaggacagt ttgaaacgtt tgatctcatg
     2641 acacttcatc caatagaaat tgcacgtcag ctgacacttt tggaatctga tctctacagg
     2701 aaagttcaac cttctgaact tgtagggagt gtatggacca aagaagataa agaaataaat
     2761 tctccaaatt tattaaaaat gattcgccac accacaaatc tcactctctg gtttgaaaag
     2821 tgcattgtgg aagcagaaaa ttttgaggaa cgggtggcag tactaagtag aattatagaa
     2881 attctgcaag tttttcaaga tttgaataat ttcaatggtg tattagagat cgtcagtgca
     2941 gtaaattcag tatcagtcta tagactagat catacctttg aggcattgca ggaaagaaaa
     3001 aggaaaattt tggatgaagc tgtggaatta agtcaagatc attttaaaaa atatctattg
     3061 aaacttaagt caatcaatcc accttgtgtg cctttttttg gaatatattt aacaaatatt
     3121 ctgaagactg aagaagggaa taatgatttt ttaaaaaaga aagggaaaga tttaatcaat
     3181 ttcagtaaga ggaggaaagt agctgaaatt actggagaaa ttcagcaata tcagaatcaa
     3241 ccttactgtt tacggataga accagaaatg aggaggttct ttgaaaacct taaccccatg
     3301 ggaaatgctt ctgaaaaaga gtttacagat tatctgttca acaagtcatt agaaattgaa
     3361 ccccggaact gcaaacagcc acctcgattt cctaggaaat caactttctc tttaaaatct
     3421 cctggaataa ggcctaatac aggccgacat ggctctacct caggtacttt acgaggtcat
     3481 ccaacaccat tagaaagaga accatgtaaa ataagcttta gtcggattgc tgaaacagag
     3541 cttgaatcaa cagtgtcagc accaacctct ccaaatacac catctactcc accagtatct
     3601 gcttcttcag accttagtgt gtttttagat gtggatctca acagttcctg tggaagcaat
     3661 agcatctttg ctccagtcct cttgcctcat tcaaagtctt tctttagttc gtgtggtagt
     3721 ttacataaac taagtgaaga gccactgatt cctcctccac ttcctcctcg aaaaaaattt
     3781 gatcatgatg cttcaaattc caagggaact atgaaatctg atgatgaccc ccctgctatt
     3841 ccaccaagac agcctcctcc tccaaaggta aaacccagag ttcctgctcc ttctggtgca
     3901 tttgacgggc ctctgcatag tccaccaccg ccgccgccga gagatcctct tcctgatacc
     3961 cctccaccag ttccccttcg gcctccagaa cactttataa actgtccgtt tactcttcag
     4021 ccacctccac tgggacatct tcacagagat ccagactggt tcagagacgt tagtacgtgt
     4081 ccaaattctc caaacactcc tcctagcaca ccctctccaa gggtaccacg tcgatgctac
     4141 gtgctcagtt ctagtcagaa taatcttgct catcctcaag ctccccctgt tccaccaagg
     4201 cagaattcaa gccctcacct accaaaactg ccaccaaaga cttacaaacg ggagctttcg
     4261 caccccccat tgtatagact gcctttgcta gaaaatgcag aaactcctca atgaccctag
     4321 ccatatgtag tcattgacac tggaatggta tttgtaaagt ttttttttta atttattcaa
     4381 aaaaggcata gtattttagt actttttaaa aataatgctc ttacaaaaat gctactgatc
     4441 aaataagctt ttaaaaattg gaaaaataaa aatacagaag tcctttacca ttatcctcag
     4501 gtgatcagta gcattgcctt gtcttggatc ctcagtgctg cccaaaggcc agtataaaga
     4561 atttatattt gcactgtaga ctctgctaaa atatggttta aagtgacatt gattgcactg
     4621 aagggggata gtgcatttgt ggaatttttc aaatttgagt aacagatgac tttttaaggc
     4681 agtgaattta tacacatata gggggtgtgt ggtgatactg agttttaagc ctctttgacc
     4741 atcttctagt ttttacattt aggaagatcg tgaataacac ccactgttct aaaactcttt
     4801 aatgccatgt cttaaaagcc agaatttgct gctgaagaca aaagtgaaaa atagaatgaa
     4861 aataatagaa tgcactgttt attgttttgt cgaaatgtaa acagactacc taacccaatc
     4921 atagaggaaa aaagggcata tatcttatac agatgtgcct ttttgttttt ggagactatg
     4981 gtgtctttag ctaacgagtt gcctattatt ttggaaaaca aagttaatat gccatacatg
     5041 tacagttttg tttatattgt acatttaaag ataatgctaa taacctatat aaatttatgt
     5101 gactcaaggc ctataataca gtctgctact ttactaattc ataaagctgg aggataagtt
     5161 tcttatggca taggaaccaa ctgcattgcc ttcaaaacca agtaactttc tctataaatc
     5221 tcgtgttaac taaaaatttt taaagtattt ttttagattg gtaatattta aaccagcaga
     5281 catttagagc tttattaaac tttttaatca gagacgtgat taaaactttt atttgccatt
     5341 tgtactcctt cgttctaagt gatgaaaaag cgtgttttcc tcttaatgcc atagcagcag
     5401 ttgtaaagta gccaaaagcc acattgttta tttactggtc tgtggccttt tactgtgctt
     5461 tgtatcagag ttcctaacaa gattaataaa tcaccccagt cttaattttt aaaa
//
LOCUS       XM_032618901            2348 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus valosin containing protein lysine
            methyltransferase (VCPKMT), transcript variant X1, mRNA.
ACCESSION   XM_032618901
VERSION     XM_032618901.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2348
                     /gene="VCPKMT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747072"
     CDS             548..1237
                     /gene="VCPKMT"
                     /codon_start=1
                     /product="protein-lysine methyltransferase METTL21D"
                     /protein_id="XP_032474792.1"
                     /db_xref="GeneID:116747072"
                     /translation="MAAPLESSGEEQLRNFVRVLEKRDGTVLRLQQYGSGGVGCVVWD
                     AAIVLSKYLETPGFSGDGAHALSRRSVLELGSGTGAVGLMAATLGADVIVTDLEELQD
                     LLKMNINMNKHLVTGSVQAKVLKWGEEIEDFPSPPDYILMADCIYYEESLEPLLKTLK
                     DLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEKIPLEKHDEEYRSEDIHIL
                     YIRKKKSKFPS"
     misc_feature    611..1132
                     /gene="VCPKMT"
                     /note="Lysine methyltransferase; Region: Methyltransf_16;
                     pfam10294"
                     /db_xref="CDD:313513"
     misc_feature    order(767..787,833..838,917..925,974..976)
                     /gene="VCPKMT"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
ORIGIN      
        1 taatttgtgc aatttaagtt ccataatccc aaagaattta agtgatgtaa acttcagagg
       61 gataactttt tcttcagcgt taaacgcagt cacaagcttc ttgcaaccat ttttacgcat
      121 tctgaagaaa aattaggagc atgttaggaa ttctctgtaa gcaggattat agccatcctt
      181 ggtaggatct tggaagctgc cttgatttaa ggccagtaat aaaaacaaaa aaaacagtgt
      241 gaatcaacct ccaactagat aaaaacactc aggttggctt tgtccggaaa agtaatttta
      301 actgcccgtt cgtcgaggca gacttgtaat ttaggggaga acgaggcggt tccgcgcgca
      361 gggtaagcct tggcctgcgg ctgcgccgcg ccggtggaac gccgccttcc ggtctttgtg
      421 ccttcgcgca cgcgcagtgg cgccaactcc gcctcctgga ggcgccgggc cccttgtaag
      481 gcggggcccg gggcggtctt gtgggtgtga cgtcactgcg ctcgacactc agtgttgccg
      541 ggcggcgatg gcggctcccc tggagtcctc cggggaggag caactgcgga actttgtgcg
      601 agttttggag aagcgagatg gcacggtgtt acgactacag cagtacggct ccggcggcgt
      661 gggttgcgtt gtttgggacg ctgccatcgt cctttctaaa tacctggaaa cgcccgggtt
      721 ttccggcgat ggggcccacg cgctgagccg gcggtcggtg ctggagctgg gctctggcac
      781 cggggccgtg gggctcatgg ctgctaccct cggggcagat gtcatagtca ccgacctaga
      841 ggaattgcaa gacttgctga agatgaatat taatatgaac aagcatcttg tcactggttc
      901 tgttcaagcc aaggtactga aatgggggga agaaatagaa gactttcctt ctcctccaga
      961 ctacatcctg atggccgact gcatatacta tgaagagtct ttggagccac tgttgaaaac
     1021 cctaaaagat ctcagtggat ctgagacttg tattatatgt tgttatgaac aacgaacaat
     1081 gggaaaaaat ccagaaatcg agaaaaaata ttttgagctt cttcaactag actttgactt
     1141 tgaaaaaatt cctttggaaa aacatgatga agaatatcga agtgaagata ttcacatttt
     1201 atacatcaga aagaaaaaat cgaaatttcc gtcgtgaaat ctagtcatct tacccaagcc
     1261 tctaacaacg tgggtaagct aacattgtga atggagcatg tgaatacagc atgggaagat
     1321 tgtgttcaca gatttttcca gcatgtcctt agggatccga tatatagaca accaccacgg
     1381 gctgcctgca gtacaaaaaa tgattgactg actgcctacc tgccattggg tctgaaatcc
     1441 aacttagttt acttttagct cagcatcaag ttctgcttaa aagaaacatg tttcagtcac
     1501 ttctcaaata aaaataggta ctgaggttag cctaaagtct gccaaaaata gtgaaagtag
     1561 catggctgac ttggcgtatt ttcaggaaag tagagataag ttgatccggt ttctaaagag
     1621 agatatcagt tactatttaa taatgttaaa attcaaatca ataaatttta gcttgtcttc
     1681 aagataaatt taaaagaagg tttttatttt aatgtattta tgcagtggtt tttatcgtta
     1741 agtatcttcc acttcattgc ttttaagata actttaatac ttgtgttctt ttactttaaa
     1801 aaaaaaaatg aaaatactgt tttgtggcca agttctgtgc ttttccttca ccacactgac
     1861 tacagtataa tttactatgg gagttagata gtagattata ccatagtcag ttgataaaga
     1921 tgaaagtaag atatcgggag actgggaggg aggaaaaggt atctttacca aattgtttat
     1981 ttgagaatgg agtgaatata aaaagtccag cttcaggctc ttgcatttat gtggctcatg
     2041 cacttttcct cacgtatagc ttccaggaaa atgcggctaa agtcactggt gttaacttgt
     2101 ttatatgaaa cagaggaaag tatttaaatg actacaaatg tagttctgta tacatttatc
     2161 aaatgatttt gattctgtgt ggtctctgtt ttatgttctc atgagaatca tctgttcaca
     2221 gactgatctg tcaggacttc agtcgcatgg ttccaaagtg taatggtaac cagatggaat
     2281 tctggtactt acaggcattg gtgctaggtg gcacaatgta tatgttaaaa taaacattgt
     2341 ttttgaga
//
LOCUS       XR_004347964            1335 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus valosin containing protein lysine
            methyltransferase (VCPKMT), transcript variant X2, misc_RNA.
ACCESSION   XR_004347964
VERSION     XR_004347964.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1335
                     /gene="VCPKMT"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747072"
     misc_RNA        1..1335
                     /gene="VCPKMT"
                     /product="valosin containing protein lysine
                     methyltransferase, transcript variant X2"
                     /db_xref="GeneID:116747072"
ORIGIN      
        1 taatttgtgc aatttaagtt ccataatccc aaagaattta agtgatgtaa acttcagagg
       61 gataactttt tcttcagcgt taaacgcagt cacaagcttc ttgcaaccat ttttacgcat
      121 tctgaagaaa aattaggagc atgttaggaa ttctctgtaa gcaggattat agccatcctt
      181 ggtaggatct tggaagctgc cttgatttaa ggccagtaat aaaaacaaaa aaaacagtgt
      241 gaatcaacct ccaactagat aaaaacactc aggttggctt tgtccggaaa agtaatttta
      301 actgcccgtt cgtcgaggca gacttgtaat ttaggggaga acgaggcggt tccgcgcgca
      361 gggtaagcct tggcctgcgg ctgcgccgcg ccggtggaac gccgccttcc ggtctttgtg
      421 ccttcgcgca cgcgcagtgg cgccaactcc gcctcctgga ggcgccgggc cccttgtaag
      481 gcggggcccg gggcggtctt gtgggtgtga cgtcactgcg ctcgacactc agtgttgccg
      541 ggcggcgatg gcggctcccc tggagtcctc cggggaggag caactgcgga actttgtgcg
      601 agttttggag aagcgagatg gcacggtgtt acgactacag cagtacggct ccggcggcgt
      661 gggttgcgtt gtttgggacg ctgccatcgt cctttctaaa tacctggaaa cgcccgggtt
      721 ttccggcgat ggggcccacg cgctgagccg gcggtcggtg ctggagctgg gctctggcac
      781 cggggccgtg gggctcatgg ctgctaccct cggggcagat gtcatagtca ccgacctaga
      841 ggaattgcaa gacttgctga agatgaatat taatatgaac aagcatcttg tcactggttc
      901 tgttcaagcc aaggtactga aatgggggga agaaatagaa gactttcctt ctcctccaga
      961 ctacatcctg atggccgact gcatatacta tgaagagtct ttggagccac tgttgaaaac
     1021 cctaaaagat ctcagtggat ctgagacttg tattatatgt tgttatgaac aacgaacaat
     1081 gggaaaaaat ccagaaatcg agaaaaaata ttttgagctt cttcaactag actttgactt
     1141 tgaaaaaatt cctttggaaa aacatgatga agaatatcga agtgaagata ttcacatttt
     1201 atacatcaga aagaaaaaat cgaaatttcc gtcgtgaaat ctagtcatct tacccaagcc
     1261 tctaacaacg tgggtaagct aacattgtga atggagcatg tgaatacagc atgggaagat
     1321 tgtggaggga aagag
//
LOCUS       XR_004347965            1967 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747086
            (LOC116747086), ncRNA.
ACCESSION   XR_004347965
VERSION     XR_004347965.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1967
                     /gene="LOC116747086"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747086"
     ncRNA           1..1967
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747086"
                     /product="uncharacterized LOC116747086"
                     /db_xref="GeneID:116747086"
ORIGIN      
        1 gagatgatgg caccagggct tcttcgaaca agagttcaac gtgatggtgg gatagtcctg
       61 ctgatggctg gaaacccaag ggctgagagc tagcaacgga ggaccggaag gcaggagtcc
      121 tgagctggga gaggccgggg tcgttcaggc tgcacgtgac tctgaattcc tagaagaggc
      181 tgcagcagcc gtggctaagg tgagcaagca aacctgagac tgctgggctc agtaatgaag
      241 gccctaagga tgaagctgac acatccctga ccagaccacg tggagcccat ggaaaattag
      301 acctgaagtt aacagcaccc acgccagtct cctggctgct tggttagaga ttttcatcca
      361 tttttgagtt gacaagagca gggagactgg tgtcagaacc cactgcttct gcttcactgt
      421 acatcagagt gtgtctgtgg gtcccctgga tggttaagtt catggaaata ggtgtatttt
      481 attcgactat gtatatcaaa caggtttcct gctgagctag agccaaaaac aaacaaaaaa
      541 atcattctat tcacatttac tgagttcctc ccagaggcca agggcctgac aggcacaagg
      601 ctctctgtgt ttgtagaact gtcatgaagg aggtcatggg aaactgagag agagaaagaa
      661 gtgaccagac catctgccag gagcttctgg tgataagctg gctggcacga ggctgaatct
      721 tttttttttt tttaactttt tggccatacc gcggggcacg tgggatctta gttcctggac
      781 agggaccgaa cctgcacccc ctacagtgga agggcagagt cataactgct ggactgccag
      841 ggaagtcccg aggctggatc ttgattacac cactggtctc agagctgcag aacgttccat
      901 catgtgtgtg gatatattta gtagtagttt attcaaccag tttcctattc atggccacta
      961 gggttgtaac tagtcctttg ctgttacaag agtgcagcgg tgaacacacc tgtgcatgtt
     1021 tttcatattt tgccagcatg tcttcgggag agactcctag ggtactcccc tgctgtggcc
     1081 ccatccccac gactgttctg gtgccctcag cctgggcatg ggatgctgga atgctaactc
     1141 cagcctccac acctcctttc catttgattg attggccagg ccggtagaaa cagcaacagg
     1201 aaggcggtct cccttcattt ttgtccgcca gtctcatacc acagcatctt actgggggaa
     1261 acgtgattca taaccagaac tctagctgga aaggaatctg agaagggcag ttttcagctt
     1321 tcttgtctct accacacagg acagctcgaa gaagtgggtt gggtgccagt caccacatcc
     1381 agctccccac ttaactcctt tgtttcacag aagaggaaat tgaggtttgg gaggggtgtg
     1441 ttattagctg aagatcacta aactggttcg tggctaacag cccggccatt tcctcctcac
     1501 gtccctgccg atgggagtcc ttgtgagttg gagtttgact gaatcaaata acttaaaaag
     1561 gcagaagcca ctccatacgc tatgaacttg tacttttctt tgtaaaacaa aacaaccgtt
     1621 ccccaagcct ccttttggag gtattataat catttagcaa ctgttatggt ttgacttgtg
     1681 tccccctaaa tttatatgtt gaagtcctaa cccccagttc cttagaaagt gaccgaccag
     1741 tttggaaacc gggtctttaa agaggtaatt aagttaaaat gaggtcttta ggatgggccc
     1801 tagtccaaca caactagtgt ccttataaaa agagatctgg ccacagacag gcaaaggaag
     1861 atgatgtgaa gacacaggga gaagacggtt gtctgcaagg caaggagaga ggcctcagaa
     1921 gaaaccaacc ctgcccgcac cttgaccttg gacttctagc ctccatt
//
LOCUS       XM_032618914            8019 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus supervillin (SVIL), transcript variant
            X1, mRNA.
ACCESSION   XM_032618914
VERSION     XM_032618914.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8019
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8019
                     /gene="SVIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116747094"
     CDS             565..7116
                     /gene="SVIL"
                     /codon_start=1
                     /product="supervillin isoform X1"
                     /protein_id="XP_032474805.1"
                     /db_xref="GeneID:116747094"
                     /translation="MKRKERIARRLEGIEADTQPILLQSCTGLVSHRLLEEDLPRYTR
                     ATDPASPHIGQSNEEEETLDSSLEKQTRSKHCTESSSIHGDSPYGSSIMDTQSLESKA
                     ERIARYKAERRRQLAEKYGLTLDPEGDAESPSRYSKSRKDTETAEKRGGKSDRSAESS
                     KDSGASYSRTEIPGLRSCMAGSKDHALHRRDGVSDTEVLLNVENQRRGQEPSATGPAQ
                     DLPPAGEGSASFPFSGRDCALGEVPRSPKPMHSLPSPSPGQPASPSHSTGDLPLPAEA
                     RASTGKPKHEWFLQKDSEGDTPSLINWPSRVKVREKLVREESARSSPELVPESLTQRR
                     HQPVPGHYLAFRSENSAFDRVSGKAASSARQPIHGYVQPADPSHTITLATSDTPESTS
                     EYSWVESATQTVTKPPPSKVLEGERRDTPVLHICESKAEDDVLFSEALEKSRKTLFAL
                     EDRGPGRSREDPSGTEDSGKPAASTVTSEPQKEPESLARPPPAQQPTERMGRSEMVVY
                     VQSESVSQGHRKEAEPTRKRKVLTRSLSDYTGPPQLQAAKATAPASKRDPEPQTSKAE
                     SEVGLLDTKVSVAQLCGVFLQSARASKRPELHSRVEGSSEGAGLPTSVERERGSRKPR
                     RYFSPGESRKTSERFRTQPITSAERKESDRSTSNSEMPAAEDEEKVDERARLSVAAKR
                     LLFREMEKSFDEKNVPKRRSRNAAVEQRLRRLQDRSHTQPVTTEEVVIAATLQASAHQ
                     KALARDQANEGKDSAEQGEPDLSTLSLAEKLALFNKLSQPVSKAISTRNRLDVRHRRM
                     NARYQTQPVTLGEVEQVQSGKLSPFCPTVNTSVSTPASTVTPTYAGNLRTKPPLDDSS
                     GAAEQKFPSSLESSDSPVRSILKSQGWQSSVEAGGSKGMSREFEETESKGVLTGGDGG
                     VTKYGSFEEAEPSYPMLSRVREGNGHKEPIYAVPRKGSLELAHPPAAQFGDEPKEFST
                     AQSTAQGSPDWKDRQLFEEKVDVENVTKRKFSLKAAEFMDPTSEQTGAAAGRPVAQTA
                     TPVSWKQQDPSEQPQEKRCRSPCAVFAAEEIKAPAAEGILDSPSKTMSIKERLALLKK
                     SGEEDWRNRLNRKQEYGKASVTSSLHIQETGQSLKKKEEGALTDDNAVSNLLWRVTES
                     RESQMTIEERKHLITVREDAWKTRGRGAANDSTQFTVAGRMVKRGLASPTAITPVASP
                     ICSRTRGTTPVSRPLEDIEARPDMQLESDLKLDRLETFLRRLNNKVGGMQETVLTVTG
                     KSVKEVMKPDDEETFAKFYRSMDSALPRSPVELDEDFDVIFDPYAPKLTSSVAEHKRA
                     VRPKRRVQASKNPLKMLAAREDLLQGYTEQRLNVAFVESKRMKVEKMSASSNFSEVTL
                     AGLASKENFSNVSLRSVNLTEQNSNNSAVPYKKLMLLQIKGRRHVQTRLVEPRASSLN
                     SGDCFLALSPHHCFLWVGEFANVIEKAKASELASLIQTKRELGCRATYIQTIEEGINT
                     HTHAAKDFWKLLGGQTSYQSAGDPKEDELYETAIIETNCIYRLMDDKLVPDDDYWGKI
                     PKCSLLQARQVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTFDYENCDINPL
                     DPGECNPLIPRKGQGRPDWAIFGRLTEHNETILFKEKFLDWTELKRPNEKNASELAQH
                     KDDPRAEVKPYDVTRMVPVPQTTAGTVLDGVNVGRGYGLVQGDDRRQLEIASLSVDVW
                     HILEFDYSRLPKQSIGQFHEGDAYVVKWKFIVSTAVGSRQKGEHPVRVAGKEKRVYFF
                     WQGRQSTVSEKGTSALMTVQLDEERGAQVQVLQGKEPPCFLQCFQGGMVVHSGRREEE
                     EDNAQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVHKALIYLWHGCKAQ
                     AHTKEVGRTAANKIKEQCPLEAGLHCSSKVAVHECDEGLEPPGFWGALGRRDRKAYDC
                     MLQDPGNFNFTPRLFILSSSSGDFSATEFMYPARDPSVVNSMPFLQEDLYSAPQPALF
                     LVDNHHEVYLWQGWWPVENKITGSARIRWASDRKSAMETVLQYCRGKNLKKPPPKSYL
                     IHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLCKTIYPLADLL
                     ARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF"
     misc_feature    1192..>2073
                     /gene="SVIL"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    4795..5085
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 2-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S2_like; cd11289"
                     /db_xref="CDD:200445"
     misc_feature    5158..5460
                     /gene="SVIL"
                     /note="Tandemly repeated domains found in gelsolin,
                     severin, villin, and related proteins; Region:
                     gelsolin_like; cd11280"
                     /db_xref="CDD:200436"
     misc_feature    5707..6048
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 4-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S4_like; cd11293"
                     /db_xref="CDD:200449"
     misc_feature    order(5755..5760,5920..5922,5938..5943,5947..5955,
                     5959..5967,5971..5976,5998..6000,6004..6006)
                     /gene="SVIL"
                     /note="putative actin binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    6019..6021
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    6106..6423
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 5-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S5_like; cd11288"
                     /db_xref="CDD:200444"
     misc_feature    6130..6132
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200444"
     misc_feature    6472..6840
                     /gene="SVIL"
                     /note="Actin depolymerization factor/cofilin- and
                     gelsolin-like domains; Region: ADF_gelsolin; cl15697"
                     /db_xref="CDD:472830"
     misc_feature    7006..7113
                     /gene="SVIL"
                     /note="Villin headpiece domain; Region: VHP; pfam02209"
                     /db_xref="CDD:460493"
ORIGIN      
        1 aggtgaggag tggtgaatcc tcccgggagg gggacccggt cctcactctg tgcagggagt
       61 cagggagtgg ccgtggcgct gtcgagagtc ggggctgccc agctgctgtg gggcggggag
      121 cggcgattgt gcccccggag gcctggggaa agctcggaaa gaagattcta gctacattgg
      181 agactggtcg ttttctgaaa ctaaggagaa gcccaggaag ggatgatgaa ttctttttga
      241 gtttcgagcc acaggataaa aagaagagtt ggagtacatg agctagaaga ctgggagagc
      301 ggagacaggg agagtttcga agtccttctc tatcagaagc catgatttaa acatcaccat
      361 tacgatttga acaagaaaaa cgtaagcctt gctggattcc cacgtcaaag aatagttcca
      421 agctttcagg aagagttctt gcttgaagac aaagaaccgc ttgctaacca caaaagagga
      481 atcgatgctc agcttttagc tgccctccct aaagttgcag aattaagaaa actctttgaa
      541 ccaaagagga aagaattttc agacatgaaa agaaaagaaa gaattgccag gcgcctagaa
      601 ggaatcgaag ccgacacgca gcccatcctc ttgcagagct gcacgggctt agtgagtcat
      661 cgtctgctgg aggaggacct gcccagatac acgcgcgcca cagacccagc cagtcctcac
      721 atcggccaat caaatgaaga ggaagaaact ttggattctt ccttagaaaa gcagactcga
      781 tccaaacact gcacagaatc ctcgagcatc catggtgact ccccctacgg ttccagcatc
      841 atggacaccc agagcctaga atccaaagcc gaaaggatcg ccagatacaa agcagagagg
      901 agacggcagc tggcagaaaa gtatgggctc accctggacc cggaaggcga cgccgaatct
      961 ccatctcgat acagcaagtc caggaaggac actgagactg ctgagaaaag gggaggaaaa
     1021 agtgaccgct ctgctgagtc cagcaaagat tcgggcgctt cctactccag gaccgagatc
     1081 ccggggctca ggagctgcat ggctgggtcc aaggaccatg ccctccaccg gcgcgatggt
     1141 gtttccgaca cagaggtgct gctcaacgta gaaaaccaaa gacgaggtca agagcccagt
     1201 gccaccgggc cagcccaaga cctgcccccc gcgggggagg gctccgcatc cttcccattc
     1261 tccgggcgag actgcgccct cggtgaagtg ccaaggtccc caaagccaat gcacagcctg
     1321 cccagcccgt cacctgggca gccagcctct ccgagccact ccacaggtga cctgccactc
     1381 cctgccgagg ctcgagccag taccgggaaa cccaagcatg agtggtttct ccagaaagat
     1441 tccgaagggg acacaccttc acttatcaac tggccttcca gagttaaagt tagagaaaaa
     1501 ctggtgagag aggagagtgc tcgcagcagc cctgaacttg tccctgagtc cttaactcag
     1561 aggagacacc agccagtgcc aggccattac ctggcctttc ggtcagagaa ctcagccttc
     1621 gatagggtct cgggcaaggc agccagctct gcacgacagc ccatccacgg ctacgtccag
     1681 ccggcagatc ccagtcacac catcacgctg gcgacctcgg acaccccaga aagcacatcc
     1741 gagtacagct gggtggagtc ggccacccag accgtcacaa agcctccccc ctcgaaggtt
     1801 ctagaaggtg agagaagaga taccccggtt ctccatattt gtgaatcaaa agcagaggac
     1861 gatgtgctct tctctgaagc tctggagaaa agcaggaaaa cgcttttcgc tttggaggat
     1921 cgtgggcctg ggagaagccg ggaagacccc tctggaaccg aggactcggg taagcctgct
     1981 gctagcacag tcacctcgga acctcagaag gaacctgaaa gcctggcccg cccacctcca
     2041 gctcagcagc ccacggagag gatgggccga agcgaaatgg ttgtgtatgt tcagagcgag
     2101 tctgtgtccc aaggtcacag gaaggaggca gagcccacga ggaagcgcaa ggtcctcacc
     2161 cgctcactgt ctgactacac gggcccgcct cagctgcagg ctgcgaaggc cacggccccg
     2221 gcttccaagc gcgacccgga gccgcagacg tccaaggctg agtcggaagt gggcctgctg
     2281 gacaccaagg tctccgtcgc ccagctctgc ggtgtgttcc tgcagtcagc cagggccagc
     2341 aagaggcctg agctccattc gcgggtcgag gggtcaagcg aaggtgctgg cttgcctacc
     2401 agcgtggaac gggagagagg gtcccggaaa ccaagacgct atttttctcc tggtgaaagt
     2461 agaaagactt ctgagagatt tagaactcaa cccataacct cagcagaacg aaaggaatcg
     2521 gataggtcaa cttcaaattc agaaatgcca gctgccgagg atgaagagaa ggtcgatgag
     2581 cgagccaggc tgagcgttgc tgcgaagagg ctgctcttca gggaaatgga aaagtcattt
     2641 gacgagaaga acgtcccgaa gcgccgctcc aggaatgcag ccgtagagca gaggctacgg
     2701 cgtctgcagg accgatccca cacgcagcct gtcaccaccg aggaggtggt catcgcagcc
     2761 acactgcagg catctgctca ccagaaggcg ttagccagag accaggcgaa tgagggcaaa
     2821 gattctgccg agcaaggaga acctgacctc tccaccctga gcttagcgga gaagttggcc
     2881 ttgtttaaca aactgtccca gccggtctca aaagcgattt caacgcggaa cagattagac
     2941 gtgagacaca ggaggatgaa tgctcgctat cagacccagc cggtcacgct tggagaggtg
     3001 gaacaggtgc aaagtggcaa gctcagccct ttctgcccca ctgttaacac atctgtgtcc
     3061 accccggcat ctaccgtcac ccccacgtac gcagggaatc ttcggacaaa gccaccgctg
     3121 gatgacagct ctggtgccgc tgagcagaag tttccttctt cgctagaaag ttcagactct
     3181 ccagttagaa gcatcctgaa atcccagggc tggcagtctt cggtagaggc tggtgggagc
     3241 aaaggaatgt cgagagaatt tgaagagaca gaaagcaaag gagtcttgac aggtggagat
     3301 ggtggtgtta caaagtacgg gtccttcgag gaagcagagc catcctaccc catgcttagc
     3361 agagtccggg aaggaaatgg ccataaggaa cccatctatg ctgttccgag aaagggaagc
     3421 ctggagctcg cccatcctcc cgcggctcag ttcggcgacg aaccgaagga attttccact
     3481 gcacaaagca ccgcacaggg gagcccggac tggaaggaca ggcagctctt tgaagagaag
     3541 gtggacgtgg agaatgtcac gaagaggaag ttttcgctga aagcggcaga gttcatggat
     3601 cccacttctg agcagacagg cgcagctgct gggagaccgg tcgctcagac tgcaaccccc
     3661 gtgtcctgga agcagcaaga tccctctgaa cagccgcagg agaagcgctg tcggagtccg
     3721 tgtgcagtgt ttgctgctga agagatcaaa gcaccagcgg cggagggcat cctcgactct
     3781 cccagcaaaa ccatgtccat taaagaaaga ttagcactgt tgaagaaaag tggtgaggaa
     3841 gactggagaa acagacttaa caggaagcag gagtatggca aagcgtccgt caccagcagc
     3901 ctgcacatcc aggaaacggg acagtcgctc aagaagaagg aagaaggagc attgacagat
     3961 gataatgccg tttctaatct gctctggcgg gtcacagaaa gtcgagagag ccagatgacg
     4021 attgaagaga ggaagcatct catcaccgtg agagaggacg cctggaagac cagaggccga
     4081 ggggcagcca acgactccac ccagtttacc gtggccggca ggatggtgaa gcgaggtctg
     4141 gcgtccccca ctgccatcac cccagtagcg tcccctatct gcagtagaac gaggggcacc
     4201 acgccagttt ccagacccct ggaagatatc gaagccagac cagacatgca gttagaatca
     4261 gacctcaagt tggacaggct ggaaaccttt ctaagaaggc tgaataacaa agttggtggg
     4321 atgcaagaaa cggtcctcac cgtcaccggg aaatccgtga aagaggtgat gaagccggac
     4381 gatgaggaaa cctttgccaa gttctaccgc agcatggatt ccgctctacc gagaagcccc
     4441 gtggagctgg acgaggactt tgatgtcatt ttcgatcctt atgcccccaa gttgacatcc
     4501 tctgtggctg agcacaagcg tgcagtgagg cccaagcgcc gggttcaggc ttccaaaaac
     4561 cccctgaaga tgctggcggc aagggaagat ctcctccagg ggtacacgga gcagagactg
     4621 aacgtggcct tcgtggaatc aaagcgtatg aaagtcgaaa agatgtctgc cagctccaac
     4681 ttctccgaag tcaccctggc gggattagcc agcaaagaaa acttcagcaa cgtcagcctg
     4741 cggagcgtca acctgacgga acagaattcc aacaatagcg cggtgcccta caaaaagctg
     4801 atgctgttac agattaaagg aagaagacac gtgcagacgc ggctggtgga acctcgcgcc
     4861 tcttccctca acagcgggga ctgcttcctc gcgctgtccc cccaccactg cttcctgtgg
     4921 gtcggagagt ttgccaacgt catagagaag gcgaaggcct cagaactcgc aagtttaatt
     4981 cagaccaaga gggaacttgg ttgtagagct acttatatcc aaactatcga agaaggaatt
     5041 aacacacaca ctcatgcagc caaagacttc tggaagcttc tgggtggcca aaccagttac
     5101 cagtctgctg gagacccaaa ggaagatgag ctctatgaaa cggccataat agaaaccaac
     5161 tgcatttacc gactaatgga tgacaaactc gttcctgatg acgactactg ggggaagatt
     5221 ccaaagtgct ccctcctgca ggcaagacag gtcctggtgt ttgattttgg gagcgaagtt
     5281 tacgtgtggc acgggaaaga ggtcacatta gcgcaacgga aaatagcctt tcagctggca
     5341 aagcacttat ggaacggaac ctttgactac gagaactgtg acatcaaccc cctggaccct
     5401 ggagagtgca acccgctcat tcccagaaaa ggacaggggc ggccggactg ggcgatattt
     5461 gggagactta cagaacacaa cgagacgatt ttgttcaaag agaaatttct cgactggacg
     5521 gaactgaaga gacctaacga gaagaacgcc agcgaacttg cccagcacaa ggacgacccg
     5581 cgggcggagg tcaagcctta cgacgtgacg cggatggtgc cggtgcccca gacgacagcc
     5641 ggcaccgtgc tagacggggt caacgtgggc cggggctacg gcctggtgca aggggacgac
     5701 cgcaggcagt tggagatcgc cagcctgtcg gtggacgtct ggcacatcct ggaattcgac
     5761 tacagcaggc tccccaagca gagcattggg cagttccacg agggcgacgc ctacgtggtc
     5821 aagtggaagt tcatcgtgag cacggcagtg ggaagtcggc agaagggcga gcacccggtc
     5881 agggtggccg gcaaagagaa gcgtgtctac ttcttctggc aaggccggca gtcgactgtg
     5941 agtgagaagg gcacgtcggc tctgatgacg gtgcagctgg acgaggaaag gggagcccag
     6001 gtccaggtcc tgcagggcaa ggagcccccc tgttttctgc agtgtttcca gggagggatg
     6061 gtggtccact ccgggagacg ggaggaggag gaagacaacg cacagagcga gtggaggctg
     6121 tactgcgtgc gcggagaagt gcccgtggaa gggaacttgc tggaggtggc ctgtcactgc
     6181 agcagcctga ggtccaggac gtccatggtc gtcctcaacg tccacaaagc cctcatctac
     6241 ctatggcacg gatgcaaagc ccaggcccac acgaaggagg tcggaaggac cgcggccaat
     6301 aaaatcaagg aacagtgtcc cctggaggcg gggctgcact gcagcagcaa agtggcggtt
     6361 cacgagtgtg acgaaggatt ggagcccccg ggattctggg gcgccctggg caggagggac
     6421 cggaaggcct acgactgcat gctccaagat cctggaaatt ttaacttcac gccccgcctg
     6481 ttcatcctca gtagctcctc tggcgacttc tcagccaccg agttcatgta tccagcccga
     6541 gacccctctg tggtcaattc tatgcccttc ctgcaggaag acctgtacag cgccccgcaa
     6601 ccagcacttt tccttgttga caatcaccac gaggtgtacc tctggcaggg ctggtggccc
     6661 gtggagaaca agatcaccgg ctccgcccgc atccgctggg cctcggaccg gaagagcgcc
     6721 atggagacgg tgctgcagta ctgccgagga aaaaacctca agaagccgcc ccccaagtct
     6781 tacctcatcc acgccggtct ggagcccctg accttcacca acatgtttcc cagctgggag
     6841 cacagagaag acattgcaga aatcacagaa atggacacgg aagtttcaaa tcagatcacc
     6901 ctggtggagg atgtcttagc caagctgtgc aaaaccattt atccactggc cgacctccta
     6961 gccaggcccc tgcccgaggg agttgaccct ctgaagctgg agatttatct caccgacgag
     7021 gacttcgagt ttgcactaga catgacccga gacgaataca atgcactgcc tgcctggaag
     7081 caggtgaacc tgaagaaagc aaaaggtctg ttctgagtca tgagatgctg gaggaaacct
     7141 ctgttgtcac tttcaatact gttggaccag gaaaatggat gtgttttgtt tttggaagcg
     7201 gggtatggct agtcctttaa aaaatatttt acatctgcgt tttcgagacc tgaagcgatc
     7261 agctctcctg cttgtttggg agttgtgcat tttgtaaatg ttccagaaaa ctctctggaa
     7321 acacaccttc cacgattgag cagacgatgt ttataaggca tccgcagccc cacgcgcgct
     7381 cacgcagggg gtcctcagcg aaggccacgg cactgccctc ctggtcctgc taagcgctgc
     7441 ctgttattac tttttaagcg gttcccttta taaattgtta ttttgatagt ttgtggattc
     7501 taaatatata tatatttata taaacaccgt ataaatcaaa tatgtattta acaaagcaat
     7561 acgtattcat tcacttttaa gggttttttt cgtgtcaaaa taacattaaa aggtagttgc
     7621 ttctgttgaa ttagttctgc caccaacgcg taccttcacc cacgttcaga ggcgcctcct
     7681 tcagcgttaa gtcggactcg ttctgagtgc tgcttccggt gctaagttga acaaagaaac
     7741 tatacttcca ggcacaggct cttaagaatc tgtgcgaatc cacctttcta ccttaatatc
     7801 gccccccgaa tgtatagtgc cttgtgttat gtacagttta tatacagaag agtttgctct
     7861 gcattttttg acgatggttt ggaacatcat ctacaatttt acgctgaaat ggtagaaatt
     7921 ttaaaaagaa tctcaatttc taatacctgt tgtaaaaatt aaatgtgtca ttcggcgatg
     7981 gaagactcca aaataaaagc ttcagaataa acacgacta
//
LOCUS       XM_032618919            7921 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus supervillin (SVIL), transcript variant
            X2, mRNA.
ACCESSION   XM_032618919
VERSION     XM_032618919.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7921
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7921
                     /gene="SVIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116747094"
     CDS             467..7018
                     /gene="SVIL"
                     /codon_start=1
                     /product="supervillin isoform X1"
                     /protein_id="XP_032474810.1"
                     /db_xref="GeneID:116747094"
                     /translation="MKRKERIARRLEGIEADTQPILLQSCTGLVSHRLLEEDLPRYTR
                     ATDPASPHIGQSNEEEETLDSSLEKQTRSKHCTESSSIHGDSPYGSSIMDTQSLESKA
                     ERIARYKAERRRQLAEKYGLTLDPEGDAESPSRYSKSRKDTETAEKRGGKSDRSAESS
                     KDSGASYSRTEIPGLRSCMAGSKDHALHRRDGVSDTEVLLNVENQRRGQEPSATGPAQ
                     DLPPAGEGSASFPFSGRDCALGEVPRSPKPMHSLPSPSPGQPASPSHSTGDLPLPAEA
                     RASTGKPKHEWFLQKDSEGDTPSLINWPSRVKVREKLVREESARSSPELVPESLTQRR
                     HQPVPGHYLAFRSENSAFDRVSGKAASSARQPIHGYVQPADPSHTITLATSDTPESTS
                     EYSWVESATQTVTKPPPSKVLEGERRDTPVLHICESKAEDDVLFSEALEKSRKTLFAL
                     EDRGPGRSREDPSGTEDSGKPAASTVTSEPQKEPESLARPPPAQQPTERMGRSEMVVY
                     VQSESVSQGHRKEAEPTRKRKVLTRSLSDYTGPPQLQAAKATAPASKRDPEPQTSKAE
                     SEVGLLDTKVSVAQLCGVFLQSARASKRPELHSRVEGSSEGAGLPTSVERERGSRKPR
                     RYFSPGESRKTSERFRTQPITSAERKESDRSTSNSEMPAAEDEEKVDERARLSVAAKR
                     LLFREMEKSFDEKNVPKRRSRNAAVEQRLRRLQDRSHTQPVTTEEVVIAATLQASAHQ
                     KALARDQANEGKDSAEQGEPDLSTLSLAEKLALFNKLSQPVSKAISTRNRLDVRHRRM
                     NARYQTQPVTLGEVEQVQSGKLSPFCPTVNTSVSTPASTVTPTYAGNLRTKPPLDDSS
                     GAAEQKFPSSLESSDSPVRSILKSQGWQSSVEAGGSKGMSREFEETESKGVLTGGDGG
                     VTKYGSFEEAEPSYPMLSRVREGNGHKEPIYAVPRKGSLELAHPPAAQFGDEPKEFST
                     AQSTAQGSPDWKDRQLFEEKVDVENVTKRKFSLKAAEFMDPTSEQTGAAAGRPVAQTA
                     TPVSWKQQDPSEQPQEKRCRSPCAVFAAEEIKAPAAEGILDSPSKTMSIKERLALLKK
                     SGEEDWRNRLNRKQEYGKASVTSSLHIQETGQSLKKKEEGALTDDNAVSNLLWRVTES
                     RESQMTIEERKHLITVREDAWKTRGRGAANDSTQFTVAGRMVKRGLASPTAITPVASP
                     ICSRTRGTTPVSRPLEDIEARPDMQLESDLKLDRLETFLRRLNNKVGGMQETVLTVTG
                     KSVKEVMKPDDEETFAKFYRSMDSALPRSPVELDEDFDVIFDPYAPKLTSSVAEHKRA
                     VRPKRRVQASKNPLKMLAAREDLLQGYTEQRLNVAFVESKRMKVEKMSASSNFSEVTL
                     AGLASKENFSNVSLRSVNLTEQNSNNSAVPYKKLMLLQIKGRRHVQTRLVEPRASSLN
                     SGDCFLALSPHHCFLWVGEFANVIEKAKASELASLIQTKRELGCRATYIQTIEEGINT
                     HTHAAKDFWKLLGGQTSYQSAGDPKEDELYETAIIETNCIYRLMDDKLVPDDDYWGKI
                     PKCSLLQARQVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTFDYENCDINPL
                     DPGECNPLIPRKGQGRPDWAIFGRLTEHNETILFKEKFLDWTELKRPNEKNASELAQH
                     KDDPRAEVKPYDVTRMVPVPQTTAGTVLDGVNVGRGYGLVQGDDRRQLEIASLSVDVW
                     HILEFDYSRLPKQSIGQFHEGDAYVVKWKFIVSTAVGSRQKGEHPVRVAGKEKRVYFF
                     WQGRQSTVSEKGTSALMTVQLDEERGAQVQVLQGKEPPCFLQCFQGGMVVHSGRREEE
                     EDNAQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVHKALIYLWHGCKAQ
                     AHTKEVGRTAANKIKEQCPLEAGLHCSSKVAVHECDEGLEPPGFWGALGRRDRKAYDC
                     MLQDPGNFNFTPRLFILSSSSGDFSATEFMYPARDPSVVNSMPFLQEDLYSAPQPALF
                     LVDNHHEVYLWQGWWPVENKITGSARIRWASDRKSAMETVLQYCRGKNLKKPPPKSYL
                     IHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLCKTIYPLADLL
                     ARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF"
     misc_feature    1094..>1975
                     /gene="SVIL"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    4697..4987
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 2-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S2_like; cd11289"
                     /db_xref="CDD:200445"
     misc_feature    5060..5362
                     /gene="SVIL"
                     /note="Tandemly repeated domains found in gelsolin,
                     severin, villin, and related proteins; Region:
                     gelsolin_like; cd11280"
                     /db_xref="CDD:200436"
     misc_feature    5609..5950
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 4-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S4_like; cd11293"
                     /db_xref="CDD:200449"
     misc_feature    order(5657..5662,5822..5824,5840..5845,5849..5857,
                     5861..5869,5873..5878,5900..5902,5906..5908)
                     /gene="SVIL"
                     /note="putative actin binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    5921..5923
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    6008..6325
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 5-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S5_like; cd11288"
                     /db_xref="CDD:200444"
     misc_feature    6032..6034
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200444"
     misc_feature    6374..6742
                     /gene="SVIL"
                     /note="Actin depolymerization factor/cofilin- and
                     gelsolin-like domains; Region: ADF_gelsolin; cl15697"
                     /db_xref="CDD:472830"
     misc_feature    6908..7015
                     /gene="SVIL"
                     /note="Villin headpiece domain; Region: VHP; pfam02209"
                     /db_xref="CDD:460493"
ORIGIN      
        1 aggtgaggag tggtgaatcc tcccgggagg gggacccggt cctcactctg tgcagggagt
       61 cagggagtgg ccgtggcgct gtcgagagtc ggggctgccc agctgctgtg gggcggggag
      121 cggcgattgt gcccccggag gcctggggaa agctcggaaa gaaggaagag ttggagtaca
      181 tgagctagaa gactgggaga gcggagacag ggagagtttc gaagtccttc tctatcagaa
      241 gccatgattt aaacatcacc attacgattt gaacaagaaa aacgtaagcc ttgctggatt
      301 cccacgtcaa agaatagttc caagctttca ggaagagttc ttgcttgaag acaaagaacc
      361 gcttgctaac cacaaaagag gaatcgatgc tcagctttta gctgccctcc ctaaagttgc
      421 agaattaaga aaactctttg aaccaaagag gaaagaattt tcagacatga aaagaaaaga
      481 aagaattgcc aggcgcctag aaggaatcga agccgacacg cagcccatcc tcttgcagag
      541 ctgcacgggc ttagtgagtc atcgtctgct ggaggaggac ctgcccagat acacgcgcgc
      601 cacagaccca gccagtcctc acatcggcca atcaaatgaa gaggaagaaa ctttggattc
      661 ttccttagaa aagcagactc gatccaaaca ctgcacagaa tcctcgagca tccatggtga
      721 ctccccctac ggttccagca tcatggacac ccagagccta gaatccaaag ccgaaaggat
      781 cgccagatac aaagcagaga ggagacggca gctggcagaa aagtatgggc tcaccctgga
      841 cccggaaggc gacgccgaat ctccatctcg atacagcaag tccaggaagg acactgagac
      901 tgctgagaaa aggggaggaa aaagtgaccg ctctgctgag tccagcaaag attcgggcgc
      961 ttcctactcc aggaccgaga tcccggggct caggagctgc atggctgggt ccaaggacca
     1021 tgccctccac cggcgcgatg gtgtttccga cacagaggtg ctgctcaacg tagaaaacca
     1081 aagacgaggt caagagccca gtgccaccgg gccagcccaa gacctgcccc ccgcggggga
     1141 gggctccgca tccttcccat tctccgggcg agactgcgcc ctcggtgaag tgccaaggtc
     1201 cccaaagcca atgcacagcc tgcccagccc gtcacctggg cagccagcct ctccgagcca
     1261 ctccacaggt gacctgccac tccctgccga ggctcgagcc agtaccggga aacccaagca
     1321 tgagtggttt ctccagaaag attccgaagg ggacacacct tcacttatca actggccttc
     1381 cagagttaaa gttagagaaa aactggtgag agaggagagt gctcgcagca gccctgaact
     1441 tgtccctgag tccttaactc agaggagaca ccagccagtg ccaggccatt acctggcctt
     1501 tcggtcagag aactcagcct tcgatagggt ctcgggcaag gcagccagct ctgcacgaca
     1561 gcccatccac ggctacgtcc agccggcaga tcccagtcac accatcacgc tggcgacctc
     1621 ggacacccca gaaagcacat ccgagtacag ctgggtggag tcggccaccc agaccgtcac
     1681 aaagcctccc ccctcgaagg ttctagaagg tgagagaaga gataccccgg ttctccatat
     1741 ttgtgaatca aaagcagagg acgatgtgct cttctctgaa gctctggaga aaagcaggaa
     1801 aacgcttttc gctttggagg atcgtgggcc tgggagaagc cgggaagacc cctctggaac
     1861 cgaggactcg ggtaagcctg ctgctagcac agtcacctcg gaacctcaga aggaacctga
     1921 aagcctggcc cgcccacctc cagctcagca gcccacggag aggatgggcc gaagcgaaat
     1981 ggttgtgtat gttcagagcg agtctgtgtc ccaaggtcac aggaaggagg cagagcccac
     2041 gaggaagcgc aaggtcctca cccgctcact gtctgactac acgggcccgc ctcagctgca
     2101 ggctgcgaag gccacggccc cggcttccaa gcgcgacccg gagccgcaga cgtccaaggc
     2161 tgagtcggaa gtgggcctgc tggacaccaa ggtctccgtc gcccagctct gcggtgtgtt
     2221 cctgcagtca gccagggcca gcaagaggcc tgagctccat tcgcgggtcg aggggtcaag
     2281 cgaaggtgct ggcttgccta ccagcgtgga acgggagaga gggtcccgga aaccaagacg
     2341 ctatttttct cctggtgaaa gtagaaagac ttctgagaga tttagaactc aacccataac
     2401 ctcagcagaa cgaaaggaat cggataggtc aacttcaaat tcagaaatgc cagctgccga
     2461 ggatgaagag aaggtcgatg agcgagccag gctgagcgtt gctgcgaaga ggctgctctt
     2521 cagggaaatg gaaaagtcat ttgacgagaa gaacgtcccg aagcgccgct ccaggaatgc
     2581 agccgtagag cagaggctac ggcgtctgca ggaccgatcc cacacgcagc ctgtcaccac
     2641 cgaggaggtg gtcatcgcag ccacactgca ggcatctgct caccagaagg cgttagccag
     2701 agaccaggcg aatgagggca aagattctgc cgagcaagga gaacctgacc tctccaccct
     2761 gagcttagcg gagaagttgg ccttgtttaa caaactgtcc cagccggtct caaaagcgat
     2821 ttcaacgcgg aacagattag acgtgagaca caggaggatg aatgctcgct atcagaccca
     2881 gccggtcacg cttggagagg tggaacaggt gcaaagtggc aagctcagcc ctttctgccc
     2941 cactgttaac acatctgtgt ccaccccggc atctaccgtc acccccacgt acgcagggaa
     3001 tcttcggaca aagccaccgc tggatgacag ctctggtgcc gctgagcaga agtttccttc
     3061 ttcgctagaa agttcagact ctccagttag aagcatcctg aaatcccagg gctggcagtc
     3121 ttcggtagag gctggtggga gcaaaggaat gtcgagagaa tttgaagaga cagaaagcaa
     3181 aggagtcttg acaggtggag atggtggtgt tacaaagtac gggtccttcg aggaagcaga
     3241 gccatcctac cccatgctta gcagagtccg ggaaggaaat ggccataagg aacccatcta
     3301 tgctgttccg agaaagggaa gcctggagct cgcccatcct cccgcggctc agttcggcga
     3361 cgaaccgaag gaattttcca ctgcacaaag caccgcacag gggagcccgg actggaagga
     3421 caggcagctc tttgaagaga aggtggacgt ggagaatgtc acgaagagga agttttcgct
     3481 gaaagcggca gagttcatgg atcccacttc tgagcagaca ggcgcagctg ctgggagacc
     3541 ggtcgctcag actgcaaccc ccgtgtcctg gaagcagcaa gatccctctg aacagccgca
     3601 ggagaagcgc tgtcggagtc cgtgtgcagt gtttgctgct gaagagatca aagcaccagc
     3661 ggcggagggc atcctcgact ctcccagcaa aaccatgtcc attaaagaaa gattagcact
     3721 gttgaagaaa agtggtgagg aagactggag aaacagactt aacaggaagc aggagtatgg
     3781 caaagcgtcc gtcaccagca gcctgcacat ccaggaaacg ggacagtcgc tcaagaagaa
     3841 ggaagaagga gcattgacag atgataatgc cgtttctaat ctgctctggc gggtcacaga
     3901 aagtcgagag agccagatga cgattgaaga gaggaagcat ctcatcaccg tgagagagga
     3961 cgcctggaag accagaggcc gaggggcagc caacgactcc acccagttta ccgtggccgg
     4021 caggatggtg aagcgaggtc tggcgtcccc cactgccatc accccagtag cgtcccctat
     4081 ctgcagtaga acgaggggca ccacgccagt ttccagaccc ctggaagata tcgaagccag
     4141 accagacatg cagttagaat cagacctcaa gttggacagg ctggaaacct ttctaagaag
     4201 gctgaataac aaagttggtg ggatgcaaga aacggtcctc accgtcaccg ggaaatccgt
     4261 gaaagaggtg atgaagccgg acgatgagga aacctttgcc aagttctacc gcagcatgga
     4321 ttccgctcta ccgagaagcc ccgtggagct ggacgaggac tttgatgtca ttttcgatcc
     4381 ttatgccccc aagttgacat cctctgtggc tgagcacaag cgtgcagtga ggcccaagcg
     4441 ccgggttcag gcttccaaaa accccctgaa gatgctggcg gcaagggaag atctcctcca
     4501 ggggtacacg gagcagagac tgaacgtggc cttcgtggaa tcaaagcgta tgaaagtcga
     4561 aaagatgtct gccagctcca acttctccga agtcaccctg gcgggattag ccagcaaaga
     4621 aaacttcagc aacgtcagcc tgcggagcgt caacctgacg gaacagaatt ccaacaatag
     4681 cgcggtgccc tacaaaaagc tgatgctgtt acagattaaa ggaagaagac acgtgcagac
     4741 gcggctggtg gaacctcgcg cctcttccct caacagcggg gactgcttcc tcgcgctgtc
     4801 cccccaccac tgcttcctgt gggtcggaga gtttgccaac gtcatagaga aggcgaaggc
     4861 ctcagaactc gcaagtttaa ttcagaccaa gagggaactt ggttgtagag ctacttatat
     4921 ccaaactatc gaagaaggaa ttaacacaca cactcatgca gccaaagact tctggaagct
     4981 tctgggtggc caaaccagtt accagtctgc tggagaccca aaggaagatg agctctatga
     5041 aacggccata atagaaacca actgcattta ccgactaatg gatgacaaac tcgttcctga
     5101 tgacgactac tgggggaaga ttccaaagtg ctccctcctg caggcaagac aggtcctggt
     5161 gtttgatttt gggagcgaag tttacgtgtg gcacgggaaa gaggtcacat tagcgcaacg
     5221 gaaaatagcc tttcagctgg caaagcactt atggaacgga acctttgact acgagaactg
     5281 tgacatcaac cccctggacc ctggagagtg caacccgctc attcccagaa aaggacaggg
     5341 gcggccggac tgggcgatat ttgggagact tacagaacac aacgagacga ttttgttcaa
     5401 agagaaattt ctcgactgga cggaactgaa gagacctaac gagaagaacg ccagcgaact
     5461 tgcccagcac aaggacgacc cgcgggcgga ggtcaagcct tacgacgtga cgcggatggt
     5521 gccggtgccc cagacgacag ccggcaccgt gctagacggg gtcaacgtgg gccggggcta
     5581 cggcctggtg caaggggacg accgcaggca gttggagatc gccagcctgt cggtggacgt
     5641 ctggcacatc ctggaattcg actacagcag gctccccaag cagagcattg ggcagttcca
     5701 cgagggcgac gcctacgtgg tcaagtggaa gttcatcgtg agcacggcag tgggaagtcg
     5761 gcagaagggc gagcacccgg tcagggtggc cggcaaagag aagcgtgtct acttcttctg
     5821 gcaaggccgg cagtcgactg tgagtgagaa gggcacgtcg gctctgatga cggtgcagct
     5881 ggacgaggaa aggggagccc aggtccaggt cctgcagggc aaggagcccc cctgttttct
     5941 gcagtgtttc cagggaggga tggtggtcca ctccgggaga cgggaggagg aggaagacaa
     6001 cgcacagagc gagtggaggc tgtactgcgt gcgcggagaa gtgcccgtgg aagggaactt
     6061 gctggaggtg gcctgtcact gcagcagcct gaggtccagg acgtccatgg tcgtcctcaa
     6121 cgtccacaaa gccctcatct acctatggca cggatgcaaa gcccaggccc acacgaagga
     6181 ggtcggaagg accgcggcca ataaaatcaa ggaacagtgt cccctggagg cggggctgca
     6241 ctgcagcagc aaagtggcgg ttcacgagtg tgacgaagga ttggagcccc cgggattctg
     6301 gggcgccctg ggcaggaggg accggaaggc ctacgactgc atgctccaag atcctggaaa
     6361 ttttaacttc acgccccgcc tgttcatcct cagtagctcc tctggcgact tctcagccac
     6421 cgagttcatg tatccagccc gagacccctc tgtggtcaat tctatgccct tcctgcagga
     6481 agacctgtac agcgccccgc aaccagcact tttccttgtt gacaatcacc acgaggtgta
     6541 cctctggcag ggctggtggc ccgtggagaa caagatcacc ggctccgccc gcatccgctg
     6601 ggcctcggac cggaagagcg ccatggagac ggtgctgcag tactgccgag gaaaaaacct
     6661 caagaagccg ccccccaagt cttacctcat ccacgccggt ctggagcccc tgaccttcac
     6721 caacatgttt cccagctggg agcacagaga agacattgca gaaatcacag aaatggacac
     6781 ggaagtttca aatcagatca ccctggtgga ggatgtctta gccaagctgt gcaaaaccat
     6841 ttatccactg gccgacctcc tagccaggcc cctgcccgag ggagttgacc ctctgaagct
     6901 ggagatttat ctcaccgacg aggacttcga gtttgcacta gacatgaccc gagacgaata
     6961 caatgcactg cctgcctgga agcaggtgaa cctgaagaaa gcaaaaggtc tgttctgagt
     7021 catgagatgc tggaggaaac ctctgttgtc actttcaata ctgttggacc aggaaaatgg
     7081 atgtgttttg tttttggaag cggggtatgg ctagtccttt aaaaaatatt ttacatctgc
     7141 gttttcgaga cctgaagcga tcagctctcc tgcttgtttg ggagttgtgc attttgtaaa
     7201 tgttccagaa aactctctgg aaacacacct tccacgattg agcagacgat gtttataagg
     7261 catccgcagc cccacgcgcg ctcacgcagg gggtcctcag cgaaggccac ggcactgccc
     7321 tcctggtcct gctaagcgct gcctgttatt actttttaag cggttccctt tataaattgt
     7381 tattttgata gtttgtggat tctaaatata tatatattta tataaacacc gtataaatca
     7441 aatatgtatt taacaaagca atacgtattc attcactttt aagggttttt ttcgtgtcaa
     7501 aataacatta aaaggtagtt gcttctgttg aattagttct gccaccaacg cgtaccttca
     7561 cccacgttca gaggcgcctc cttcagcgtt aagtcggact cgttctgagt gctgcttccg
     7621 gtgctaagtt gaacaaagaa actatacttc caggcacagg ctcttaagaa tctgtgcgaa
     7681 tccacctttc taccttaata tcgccccccg aatgtatagt gccttgtgtt atgtacagtt
     7741 tatatacaga agagtttgct ctgcattttt tgacgatggt ttggaacatc atctacaatt
     7801 ttacgctgaa atggtagaaa ttttaaaaag aatctcaatt tctaatacct gttgtaaaaa
     7861 ttaaatgtgt cattcggcga tggaagactc caaaataaaa gcttcagaat aaacacgact
     7921 a
//
LOCUS       XM_032618924            7877 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus supervillin (SVIL), transcript variant
            X3, mRNA.
ACCESSION   XM_032618924
VERSION     XM_032618924.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7877
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7877
                     /gene="SVIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116747094"
     CDS             423..6974
                     /gene="SVIL"
                     /codon_start=1
                     /product="supervillin isoform X1"
                     /protein_id="XP_032474815.1"
                     /db_xref="GeneID:116747094"
                     /translation="MKRKERIARRLEGIEADTQPILLQSCTGLVSHRLLEEDLPRYTR
                     ATDPASPHIGQSNEEEETLDSSLEKQTRSKHCTESSSIHGDSPYGSSIMDTQSLESKA
                     ERIARYKAERRRQLAEKYGLTLDPEGDAESPSRYSKSRKDTETAEKRGGKSDRSAESS
                     KDSGASYSRTEIPGLRSCMAGSKDHALHRRDGVSDTEVLLNVENQRRGQEPSATGPAQ
                     DLPPAGEGSASFPFSGRDCALGEVPRSPKPMHSLPSPSPGQPASPSHSTGDLPLPAEA
                     RASTGKPKHEWFLQKDSEGDTPSLINWPSRVKVREKLVREESARSSPELVPESLTQRR
                     HQPVPGHYLAFRSENSAFDRVSGKAASSARQPIHGYVQPADPSHTITLATSDTPESTS
                     EYSWVESATQTVTKPPPSKVLEGERRDTPVLHICESKAEDDVLFSEALEKSRKTLFAL
                     EDRGPGRSREDPSGTEDSGKPAASTVTSEPQKEPESLARPPPAQQPTERMGRSEMVVY
                     VQSESVSQGHRKEAEPTRKRKVLTRSLSDYTGPPQLQAAKATAPASKRDPEPQTSKAE
                     SEVGLLDTKVSVAQLCGVFLQSARASKRPELHSRVEGSSEGAGLPTSVERERGSRKPR
                     RYFSPGESRKTSERFRTQPITSAERKESDRSTSNSEMPAAEDEEKVDERARLSVAAKR
                     LLFREMEKSFDEKNVPKRRSRNAAVEQRLRRLQDRSHTQPVTTEEVVIAATLQASAHQ
                     KALARDQANEGKDSAEQGEPDLSTLSLAEKLALFNKLSQPVSKAISTRNRLDVRHRRM
                     NARYQTQPVTLGEVEQVQSGKLSPFCPTVNTSVSTPASTVTPTYAGNLRTKPPLDDSS
                     GAAEQKFPSSLESSDSPVRSILKSQGWQSSVEAGGSKGMSREFEETESKGVLTGGDGG
                     VTKYGSFEEAEPSYPMLSRVREGNGHKEPIYAVPRKGSLELAHPPAAQFGDEPKEFST
                     AQSTAQGSPDWKDRQLFEEKVDVENVTKRKFSLKAAEFMDPTSEQTGAAAGRPVAQTA
                     TPVSWKQQDPSEQPQEKRCRSPCAVFAAEEIKAPAAEGILDSPSKTMSIKERLALLKK
                     SGEEDWRNRLNRKQEYGKASVTSSLHIQETGQSLKKKEEGALTDDNAVSNLLWRVTES
                     RESQMTIEERKHLITVREDAWKTRGRGAANDSTQFTVAGRMVKRGLASPTAITPVASP
                     ICSRTRGTTPVSRPLEDIEARPDMQLESDLKLDRLETFLRRLNNKVGGMQETVLTVTG
                     KSVKEVMKPDDEETFAKFYRSMDSALPRSPVELDEDFDVIFDPYAPKLTSSVAEHKRA
                     VRPKRRVQASKNPLKMLAAREDLLQGYTEQRLNVAFVESKRMKVEKMSASSNFSEVTL
                     AGLASKENFSNVSLRSVNLTEQNSNNSAVPYKKLMLLQIKGRRHVQTRLVEPRASSLN
                     SGDCFLALSPHHCFLWVGEFANVIEKAKASELASLIQTKRELGCRATYIQTIEEGINT
                     HTHAAKDFWKLLGGQTSYQSAGDPKEDELYETAIIETNCIYRLMDDKLVPDDDYWGKI
                     PKCSLLQARQVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTFDYENCDINPL
                     DPGECNPLIPRKGQGRPDWAIFGRLTEHNETILFKEKFLDWTELKRPNEKNASELAQH
                     KDDPRAEVKPYDVTRMVPVPQTTAGTVLDGVNVGRGYGLVQGDDRRQLEIASLSVDVW
                     HILEFDYSRLPKQSIGQFHEGDAYVVKWKFIVSTAVGSRQKGEHPVRVAGKEKRVYFF
                     WQGRQSTVSEKGTSALMTVQLDEERGAQVQVLQGKEPPCFLQCFQGGMVVHSGRREEE
                     EDNAQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVHKALIYLWHGCKAQ
                     AHTKEVGRTAANKIKEQCPLEAGLHCSSKVAVHECDEGLEPPGFWGALGRRDRKAYDC
                     MLQDPGNFNFTPRLFILSSSSGDFSATEFMYPARDPSVVNSMPFLQEDLYSAPQPALF
                     LVDNHHEVYLWQGWWPVENKITGSARIRWASDRKSAMETVLQYCRGKNLKKPPPKSYL
                     IHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLCKTIYPLADLL
                     ARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF"
     misc_feature    1050..>1931
                     /gene="SVIL"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    4653..4943
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 2-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S2_like; cd11289"
                     /db_xref="CDD:200445"
     misc_feature    5016..5318
                     /gene="SVIL"
                     /note="Tandemly repeated domains found in gelsolin,
                     severin, villin, and related proteins; Region:
                     gelsolin_like; cd11280"
                     /db_xref="CDD:200436"
     misc_feature    5565..5906
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 4-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S4_like; cd11293"
                     /db_xref="CDD:200449"
     misc_feature    order(5613..5618,5778..5780,5796..5801,5805..5813,
                     5817..5825,5829..5834,5856..5858,5862..5864)
                     /gene="SVIL"
                     /note="putative actin binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    5877..5879
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    5964..6281
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 5-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S5_like; cd11288"
                     /db_xref="CDD:200444"
     misc_feature    5988..5990
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200444"
     misc_feature    6330..6698
                     /gene="SVIL"
                     /note="Actin depolymerization factor/cofilin- and
                     gelsolin-like domains; Region: ADF_gelsolin; cl15697"
                     /db_xref="CDD:472830"
     misc_feature    6864..6971
                     /gene="SVIL"
                     /note="Villin headpiece domain; Region: VHP; pfam02209"
                     /db_xref="CDD:460493"
ORIGIN      
        1 ccggatccct cgccgacagc cagctcgcgc agggaccagc gtgcgtcccc cgccaccgtc
       61 gtcgccgcgg ggagctgtgc gccggctgcc ggccagcagg tgggcgagcc cgcgggctag
      121 gaagagttgg agtacatgag ctagaagact gggagagcgg agacagggag agtttcgaag
      181 tccttctcta tcagaagcca tgatttaaac atcaccatta cgatttgaac aagaaaaacg
      241 taagccttgc tggattccca cgtcaaagaa tagttccaag ctttcaggaa gagttcttgc
      301 ttgaagacaa agaaccgctt gctaaccaca aaagaggaat cgatgctcag cttttagctg
      361 ccctccctaa agttgcagaa ttaagaaaac tctttgaacc aaagaggaaa gaattttcag
      421 acatgaaaag aaaagaaaga attgccaggc gcctagaagg aatcgaagcc gacacgcagc
      481 ccatcctctt gcagagctgc acgggcttag tgagtcatcg tctgctggag gaggacctgc
      541 ccagatacac gcgcgccaca gacccagcca gtcctcacat cggccaatca aatgaagagg
      601 aagaaacttt ggattcttcc ttagaaaagc agactcgatc caaacactgc acagaatcct
      661 cgagcatcca tggtgactcc ccctacggtt ccagcatcat ggacacccag agcctagaat
      721 ccaaagccga aaggatcgcc agatacaaag cagagaggag acggcagctg gcagaaaagt
      781 atgggctcac cctggacccg gaaggcgacg ccgaatctcc atctcgatac agcaagtcca
      841 ggaaggacac tgagactgct gagaaaaggg gaggaaaaag tgaccgctct gctgagtcca
      901 gcaaagattc gggcgcttcc tactccagga ccgagatccc ggggctcagg agctgcatgg
      961 ctgggtccaa ggaccatgcc ctccaccggc gcgatggtgt ttccgacaca gaggtgctgc
     1021 tcaacgtaga aaaccaaaga cgaggtcaag agcccagtgc caccgggcca gcccaagacc
     1081 tgccccccgc gggggagggc tccgcatcct tcccattctc cgggcgagac tgcgccctcg
     1141 gtgaagtgcc aaggtcccca aagccaatgc acagcctgcc cagcccgtca cctgggcagc
     1201 cagcctctcc gagccactcc acaggtgacc tgccactccc tgccgaggct cgagccagta
     1261 ccgggaaacc caagcatgag tggtttctcc agaaagattc cgaaggggac acaccttcac
     1321 ttatcaactg gccttccaga gttaaagtta gagaaaaact ggtgagagag gagagtgctc
     1381 gcagcagccc tgaacttgtc cctgagtcct taactcagag gagacaccag ccagtgccag
     1441 gccattacct ggcctttcgg tcagagaact cagccttcga tagggtctcg ggcaaggcag
     1501 ccagctctgc acgacagccc atccacggct acgtccagcc ggcagatccc agtcacacca
     1561 tcacgctggc gacctcggac accccagaaa gcacatccga gtacagctgg gtggagtcgg
     1621 ccacccagac cgtcacaaag cctcccccct cgaaggttct agaaggtgag agaagagata
     1681 ccccggttct ccatatttgt gaatcaaaag cagaggacga tgtgctcttc tctgaagctc
     1741 tggagaaaag caggaaaacg cttttcgctt tggaggatcg tgggcctggg agaagccggg
     1801 aagacccctc tggaaccgag gactcgggta agcctgctgc tagcacagtc acctcggaac
     1861 ctcagaagga acctgaaagc ctggcccgcc cacctccagc tcagcagccc acggagagga
     1921 tgggccgaag cgaaatggtt gtgtatgttc agagcgagtc tgtgtcccaa ggtcacagga
     1981 aggaggcaga gcccacgagg aagcgcaagg tcctcacccg ctcactgtct gactacacgg
     2041 gcccgcctca gctgcaggct gcgaaggcca cggccccggc ttccaagcgc gacccggagc
     2101 cgcagacgtc caaggctgag tcggaagtgg gcctgctgga caccaaggtc tccgtcgccc
     2161 agctctgcgg tgtgttcctg cagtcagcca gggccagcaa gaggcctgag ctccattcgc
     2221 gggtcgaggg gtcaagcgaa ggtgctggct tgcctaccag cgtggaacgg gagagagggt
     2281 cccggaaacc aagacgctat ttttctcctg gtgaaagtag aaagacttct gagagattta
     2341 gaactcaacc cataacctca gcagaacgaa aggaatcgga taggtcaact tcaaattcag
     2401 aaatgccagc tgccgaggat gaagagaagg tcgatgagcg agccaggctg agcgttgctg
     2461 cgaagaggct gctcttcagg gaaatggaaa agtcatttga cgagaagaac gtcccgaagc
     2521 gccgctccag gaatgcagcc gtagagcaga ggctacggcg tctgcaggac cgatcccaca
     2581 cgcagcctgt caccaccgag gaggtggtca tcgcagccac actgcaggca tctgctcacc
     2641 agaaggcgtt agccagagac caggcgaatg agggcaaaga ttctgccgag caaggagaac
     2701 ctgacctctc caccctgagc ttagcggaga agttggcctt gtttaacaaa ctgtcccagc
     2761 cggtctcaaa agcgatttca acgcggaaca gattagacgt gagacacagg aggatgaatg
     2821 ctcgctatca gacccagccg gtcacgcttg gagaggtgga acaggtgcaa agtggcaagc
     2881 tcagcccttt ctgccccact gttaacacat ctgtgtccac cccggcatct accgtcaccc
     2941 ccacgtacgc agggaatctt cggacaaagc caccgctgga tgacagctct ggtgccgctg
     3001 agcagaagtt tccttcttcg ctagaaagtt cagactctcc agttagaagc atcctgaaat
     3061 cccagggctg gcagtcttcg gtagaggctg gtgggagcaa aggaatgtcg agagaatttg
     3121 aagagacaga aagcaaagga gtcttgacag gtggagatgg tggtgttaca aagtacgggt
     3181 ccttcgagga agcagagcca tcctacccca tgcttagcag agtccgggaa ggaaatggcc
     3241 ataaggaacc catctatgct gttccgagaa agggaagcct ggagctcgcc catcctcccg
     3301 cggctcagtt cggcgacgaa ccgaaggaat tttccactgc acaaagcacc gcacagggga
     3361 gcccggactg gaaggacagg cagctctttg aagagaaggt ggacgtggag aatgtcacga
     3421 agaggaagtt ttcgctgaaa gcggcagagt tcatggatcc cacttctgag cagacaggcg
     3481 cagctgctgg gagaccggtc gctcagactg caacccccgt gtcctggaag cagcaagatc
     3541 cctctgaaca gccgcaggag aagcgctgtc ggagtccgtg tgcagtgttt gctgctgaag
     3601 agatcaaagc accagcggcg gagggcatcc tcgactctcc cagcaaaacc atgtccatta
     3661 aagaaagatt agcactgttg aagaaaagtg gtgaggaaga ctggagaaac agacttaaca
     3721 ggaagcagga gtatggcaaa gcgtccgtca ccagcagcct gcacatccag gaaacgggac
     3781 agtcgctcaa gaagaaggaa gaaggagcat tgacagatga taatgccgtt tctaatctgc
     3841 tctggcgggt cacagaaagt cgagagagcc agatgacgat tgaagagagg aagcatctca
     3901 tcaccgtgag agaggacgcc tggaagacca gaggccgagg ggcagccaac gactccaccc
     3961 agtttaccgt ggccggcagg atggtgaagc gaggtctggc gtcccccact gccatcaccc
     4021 cagtagcgtc ccctatctgc agtagaacga ggggcaccac gccagtttcc agacccctgg
     4081 aagatatcga agccagacca gacatgcagt tagaatcaga cctcaagttg gacaggctgg
     4141 aaacctttct aagaaggctg aataacaaag ttggtgggat gcaagaaacg gtcctcaccg
     4201 tcaccgggaa atccgtgaaa gaggtgatga agccggacga tgaggaaacc tttgccaagt
     4261 tctaccgcag catggattcc gctctaccga gaagccccgt ggagctggac gaggactttg
     4321 atgtcatttt cgatccttat gcccccaagt tgacatcctc tgtggctgag cacaagcgtg
     4381 cagtgaggcc caagcgccgg gttcaggctt ccaaaaaccc cctgaagatg ctggcggcaa
     4441 gggaagatct cctccagggg tacacggagc agagactgaa cgtggccttc gtggaatcaa
     4501 agcgtatgaa agtcgaaaag atgtctgcca gctccaactt ctccgaagtc accctggcgg
     4561 gattagccag caaagaaaac ttcagcaacg tcagcctgcg gagcgtcaac ctgacggaac
     4621 agaattccaa caatagcgcg gtgccctaca aaaagctgat gctgttacag attaaaggaa
     4681 gaagacacgt gcagacgcgg ctggtggaac ctcgcgcctc ttccctcaac agcggggact
     4741 gcttcctcgc gctgtccccc caccactgct tcctgtgggt cggagagttt gccaacgtca
     4801 tagagaaggc gaaggcctca gaactcgcaa gtttaattca gaccaagagg gaacttggtt
     4861 gtagagctac ttatatccaa actatcgaag aaggaattaa cacacacact catgcagcca
     4921 aagacttctg gaagcttctg ggtggccaaa ccagttacca gtctgctgga gacccaaagg
     4981 aagatgagct ctatgaaacg gccataatag aaaccaactg catttaccga ctaatggatg
     5041 acaaactcgt tcctgatgac gactactggg ggaagattcc aaagtgctcc ctcctgcagg
     5101 caagacaggt cctggtgttt gattttggga gcgaagttta cgtgtggcac gggaaagagg
     5161 tcacattagc gcaacggaaa atagcctttc agctggcaaa gcacttatgg aacggaacct
     5221 ttgactacga gaactgtgac atcaaccccc tggaccctgg agagtgcaac ccgctcattc
     5281 ccagaaaagg acaggggcgg ccggactggg cgatatttgg gagacttaca gaacacaacg
     5341 agacgatttt gttcaaagag aaatttctcg actggacgga actgaagaga cctaacgaga
     5401 agaacgccag cgaacttgcc cagcacaagg acgacccgcg ggcggaggtc aagccttacg
     5461 acgtgacgcg gatggtgccg gtgccccaga cgacagccgg caccgtgcta gacggggtca
     5521 acgtgggccg gggctacggc ctggtgcaag gggacgaccg caggcagttg gagatcgcca
     5581 gcctgtcggt ggacgtctgg cacatcctgg aattcgacta cagcaggctc cccaagcaga
     5641 gcattgggca gttccacgag ggcgacgcct acgtggtcaa gtggaagttc atcgtgagca
     5701 cggcagtggg aagtcggcag aagggcgagc acccggtcag ggtggccggc aaagagaagc
     5761 gtgtctactt cttctggcaa ggccggcagt cgactgtgag tgagaagggc acgtcggctc
     5821 tgatgacggt gcagctggac gaggaaaggg gagcccaggt ccaggtcctg cagggcaagg
     5881 agcccccctg ttttctgcag tgtttccagg gagggatggt ggtccactcc gggagacggg
     5941 aggaggagga agacaacgca cagagcgagt ggaggctgta ctgcgtgcgc ggagaagtgc
     6001 ccgtggaagg gaacttgctg gaggtggcct gtcactgcag cagcctgagg tccaggacgt
     6061 ccatggtcgt cctcaacgtc cacaaagccc tcatctacct atggcacgga tgcaaagccc
     6121 aggcccacac gaaggaggtc ggaaggaccg cggccaataa aatcaaggaa cagtgtcccc
     6181 tggaggcggg gctgcactgc agcagcaaag tggcggttca cgagtgtgac gaaggattgg
     6241 agcccccggg attctggggc gccctgggca ggagggaccg gaaggcctac gactgcatgc
     6301 tccaagatcc tggaaatttt aacttcacgc cccgcctgtt catcctcagt agctcctctg
     6361 gcgacttctc agccaccgag ttcatgtatc cagcccgaga cccctctgtg gtcaattcta
     6421 tgcccttcct gcaggaagac ctgtacagcg ccccgcaacc agcacttttc cttgttgaca
     6481 atcaccacga ggtgtacctc tggcagggct ggtggcccgt ggagaacaag atcaccggct
     6541 ccgcccgcat ccgctgggcc tcggaccgga agagcgccat ggagacggtg ctgcagtact
     6601 gccgaggaaa aaacctcaag aagccgcccc ccaagtctta cctcatccac gccggtctgg
     6661 agcccctgac cttcaccaac atgtttccca gctgggagca cagagaagac attgcagaaa
     6721 tcacagaaat ggacacggaa gtttcaaatc agatcaccct ggtggaggat gtcttagcca
     6781 agctgtgcaa aaccatttat ccactggccg acctcctagc caggcccctg cccgagggag
     6841 ttgaccctct gaagctggag atttatctca ccgacgagga cttcgagttt gcactagaca
     6901 tgacccgaga cgaatacaat gcactgcctg cctggaagca ggtgaacctg aagaaagcaa
     6961 aaggtctgtt ctgagtcatg agatgctgga ggaaacctct gttgtcactt tcaatactgt
     7021 tggaccagga aaatggatgt gttttgtttt tggaagcggg gtatggctag tcctttaaaa
     7081 aatattttac atctgcgttt tcgagacctg aagcgatcag ctctcctgct tgtttgggag
     7141 ttgtgcattt tgtaaatgtt ccagaaaact ctctggaaac acaccttcca cgattgagca
     7201 gacgatgttt ataaggcatc cgcagcccca cgcgcgctca cgcagggggt cctcagcgaa
     7261 ggccacggca ctgccctcct ggtcctgcta agcgctgcct gttattactt tttaagcggt
     7321 tccctttata aattgttatt ttgatagttt gtggattcta aatatatata tatttatata
     7381 aacaccgtat aaatcaaata tgtatttaac aaagcaatac gtattcattc acttttaagg
     7441 gtttttttcg tgtcaaaata acattaaaag gtagttgctt ctgttgaatt agttctgcca
     7501 ccaacgcgta ccttcaccca cgttcagagg cgcctccttc agcgttaagt cggactcgtt
     7561 ctgagtgctg cttccggtgc taagttgaac aaagaaacta tacttccagg cacaggctct
     7621 taagaatctg tgcgaatcca cctttctacc ttaatatcgc cccccgaatg tatagtgcct
     7681 tgtgttatgt acagtttata tacagaagag tttgctctgc attttttgac gatggtttgg
     7741 aacatcatct acaattttac gctgaaatgg tagaaatttt aaaaagaatc tcaatttcta
     7801 atacctgttg taaaaattaa atgtgtcatt cggcgatgga agactccaaa ataaaagctt
     7861 cagaataaac acgacta
//
LOCUS       XM_032618927            7822 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus supervillin (SVIL), transcript variant
            X4, mRNA.
ACCESSION   XM_032618927
VERSION     XM_032618927.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7822
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7822
                     /gene="SVIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116747094"
     CDS             512..6919
                     /gene="SVIL"
                     /codon_start=1
                     /product="supervillin isoform X2"
                     /protein_id="XP_032474818.1"
                     /db_xref="GeneID:116747094"
                     /translation="MKRKERIARRLEGIEADTQPILLQSCTGLVSHRLLEEDLPRYTR
                     ATDPASPHIGQSNEEEETLDSSLEKQTRSKHCTESSSIHGDSPYGSSIMDTQSLESKA
                     ERIARYKAERRRQLAEKYGLTLDPEGDAESPSRYSKSRKDTETAEKRGGKSDRSAESS
                     KDSGASYSRTEIPGLRSCMAGSKDHALHRRDGVSDTEVLLNVENQRRGQEPSATGPAQ
                     DLPPAGEGSASFPFSGRDCALGEVPRSPKPMHSLPSPSPGQPASPSHSTGDLPLPAEA
                     RASTGKPKHEWFLQKDSEGDTPSLINWPSRVKVREKLVREESARSSPELVPESLTQRR
                     HQPVPGHYLAFRSENSAFDRVSGKAASSARQPIHGYVQPADPSHTITLATSDTPESTS
                     EYSWVESATQTVTKPPPSKVLEGERRDTPVLHICESKAEDDVLFSEALEKSRKTLFAL
                     EDRGPGRSREDPSGTEDSGHRKEAEPTRKRKVLTRSLSDYTGPPQLQAAKATAPASKR
                     DPEPQTSKAESEVGLLDTKVSVAQLCGVFLQSARASKRPELHSRVEGSSEGAGLPTSV
                     ERERGSRKPRRYFSPGESRKTSERFRTQPITSAERKESDRSTSNSEMPAAEDEEKVDE
                     RARLSVAAKRLLFREMEKSFDEKNVPKRRSRNAAVEQRLRRLQDRSHTQPVTTEEVVI
                     AATLQASAHQKALARDQANEGKDSAEQGEPDLSTLSLAEKLALFNKLSQPVSKAISTR
                     NRLDVRHRRMNARYQTQPVTLGEVEQVQSGKLSPFCPTVNTSVSTPASTVTPTYAGNL
                     RTKPPLDDSSGAAEQKFPSSLESSDSPVRSILKSQGWQSSVEAGGSKGMSREFEETES
                     KGVLTGGDGGVTKYGSFEEAEPSYPMLSRVREGNGHKEPIYAVPRKGSLELAHPPAAQ
                     FGDEPKEFSTAQSTAQGSPDWKDRQLFEEKVDVENVTKRKFSLKAAEFMDPTSEQTGA
                     AAGRPVAQTATPVSWKQQDPSEQPQEKRCRSPCAVFAAEEIKAPAAEGILDSPSKTMS
                     IKERLALLKKSGEEDWRNRLNRKQEYGKASVTSSLHIQETGQSLKKKEEGALTDDNAV
                     SNLLWRVTESRESQMTIEERKHLITVREDAWKTRGRGAANDSTQFTVAGRMVKRGLAS
                     PTAITPVASPICSRTRGTTPVSRPLEDIEARPDMQLESDLKLDRLETFLRRLNNKVGG
                     MQETVLTVTGKSVKEVMKPDDEETFAKFYRSMDSALPRSPVELDEDFDVIFDPYAPKL
                     TSSVAEHKRAVRPKRRVQASKNPLKMLAAREDLLQGYTEQRLNVAFVESKRMKVEKMS
                     ASSNFSEVTLAGLASKENFSNVSLRSVNLTEQNSNNSAVPYKKLMLLQIKGRRHVQTR
                     LVEPRASSLNSGDCFLALSPHHCFLWVGEFANVIEKAKASELASLIQTKRELGCRATY
                     IQTIEEGINTHTHAAKDFWKLLGGQTSYQSAGDPKEDELYETAIIETNCIYRLMDDKL
                     VPDDDYWGKIPKCSLLQARQVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTF
                     DYENCDINPLDPGECNPLIPRKGQGRPDWAIFGRLTEHNETILFKEKFLDWTELKRPN
                     EKNASELAQHKDDPRAEVKPYDVTRMVPVPQTTAGTVLDGVNVGRGYGLVQGDDRRQL
                     EIASLSVDVWHILEFDYSRLPKQSIGQFHEGDAYVVKWKFIVSTAVGSRQKGEHPVRV
                     AGKEKRVYFFWQGRQSTVSEKGTSALMTVQLDEERGAQVQVLQGKEPPCFLQCFQGGM
                     VVHSGRREEEEDNAQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVHKAL
                     IYLWHGCKAQAHTKEVGRTAANKIKEQCPLEAGLHCSSKVAVHECDEGLEPPGFWGAL
                     GRRDRKAYDCMLQDPGNFNFTPRLFILSSSSGDFSATEFMYPARDPSVVNSMPFLQED
                     LYSAPQPALFLVDNHHEVYLWQGWWPVENKITGSARIRWASDRKSAMETVLQYCRGKN
                     LKKPPPKSYLIHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLC
                     KTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAK
                     GLF"
     misc_feature    1139..>2221
                     /gene="SVIL"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    4598..4888
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 2-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S2_like; cd11289"
                     /db_xref="CDD:200445"
     misc_feature    4961..5263
                     /gene="SVIL"
                     /note="Tandemly repeated domains found in gelsolin,
                     severin, villin, and related proteins; Region:
                     gelsolin_like; cd11280"
                     /db_xref="CDD:200436"
     misc_feature    5510..5851
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 4-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S4_like; cd11293"
                     /db_xref="CDD:200449"
     misc_feature    order(5558..5563,5723..5725,5741..5746,5750..5758,
                     5762..5770,5774..5779,5801..5803,5807..5809)
                     /gene="SVIL"
                     /note="putative actin binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    5822..5824
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    5909..6226
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 5-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S5_like; cd11288"
                     /db_xref="CDD:200444"
     misc_feature    5933..5935
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200444"
     misc_feature    6275..6643
                     /gene="SVIL"
                     /note="Actin depolymerization factor/cofilin- and
                     gelsolin-like domains; Region: ADF_gelsolin; cl15697"
                     /db_xref="CDD:472830"
     misc_feature    6809..6916
                     /gene="SVIL"
                     /note="Villin headpiece domain; Region: VHP; pfam02209"
                     /db_xref="CDD:460493"
ORIGIN      
        1 cccgactctg ttgaagtgag taaaggagcg caggcagcag cgtgcaaggt gatttgcagc
       61 cggtggggag tctggcggat ggaaagtcca agcgaatgac atctctgagg agctgccctg
      121 aggacccgtt ttggtcgttg gttgcgccct cccgggaggt cacaaggagg aggggcagga
      181 ggcagactct tctagaacct ctgtgccacg aagagttgga gtacatgagc tagaagactg
      241 ggagagcgga gacagggaga gtttcgaagt ccttctctat cagaagccat gatttaaaca
      301 tcaccattac gatttgaaca agaaaaacgt aagccttgct ggattcccac gtcaaagaat
      361 agttccaagc tttcaggaag agttcttgct tgaagacaaa gaaccgcttg ctaaccacaa
      421 aagaggaatc gatgctcagc ttttagctgc cctccctaaa gttgcagaat taagaaaact
      481 ctttgaacca aagaggaaag aattttcaga catgaaaaga aaagaaagaa ttgccaggcg
      541 cctagaagga atcgaagccg acacgcagcc catcctcttg cagagctgca cgggcttagt
      601 gagtcatcgt ctgctggagg aggacctgcc cagatacacg cgcgccacag acccagccag
      661 tcctcacatc ggccaatcaa atgaagagga agaaactttg gattcttcct tagaaaagca
      721 gactcgatcc aaacactgca cagaatcctc gagcatccat ggtgactccc cctacggttc
      781 cagcatcatg gacacccaga gcctagaatc caaagccgaa aggatcgcca gatacaaagc
      841 agagaggaga cggcagctgg cagaaaagta tgggctcacc ctggacccgg aaggcgacgc
      901 cgaatctcca tctcgataca gcaagtccag gaaggacact gagactgctg agaaaagggg
      961 aggaaaaagt gaccgctctg ctgagtccag caaagattcg ggcgcttcct actccaggac
     1021 cgagatcccg gggctcagga gctgcatggc tgggtccaag gaccatgccc tccaccggcg
     1081 cgatggtgtt tccgacacag aggtgctgct caacgtagaa aaccaaagac gaggtcaaga
     1141 gcccagtgcc accgggccag cccaagacct gccccccgcg ggggagggct ccgcatcctt
     1201 cccattctcc gggcgagact gcgccctcgg tgaagtgcca aggtccccaa agccaatgca
     1261 cagcctgccc agcccgtcac ctgggcagcc agcctctccg agccactcca caggtgacct
     1321 gccactccct gccgaggctc gagccagtac cgggaaaccc aagcatgagt ggtttctcca
     1381 gaaagattcc gaaggggaca caccttcact tatcaactgg ccttccagag ttaaagttag
     1441 agaaaaactg gtgagagagg agagtgctcg cagcagccct gaacttgtcc ctgagtcctt
     1501 aactcagagg agacaccagc cagtgccagg ccattacctg gcctttcggt cagagaactc
     1561 agccttcgat agggtctcgg gcaaggcagc cagctctgca cgacagccca tccacggcta
     1621 cgtccagccg gcagatccca gtcacaccat cacgctggcg acctcggaca ccccagaaag
     1681 cacatccgag tacagctggg tggagtcggc cacccagacc gtcacaaagc ctcccccctc
     1741 gaaggttcta gaaggtgaga gaagagatac cccggttctc catatttgtg aatcaaaagc
     1801 agaggacgat gtgctcttct ctgaagctct ggagaaaagc aggaaaacgc ttttcgcttt
     1861 ggaggatcgt gggcctggga gaagccggga agacccctct ggaaccgagg actcgggtca
     1921 caggaaggag gcagagccca cgaggaagcg caaggtcctc acccgctcac tgtctgacta
     1981 cacgggcccg cctcagctgc aggctgcgaa ggccacggcc ccggcttcca agcgcgaccc
     2041 ggagccgcag acgtccaagg ctgagtcgga agtgggcctg ctggacacca aggtctccgt
     2101 cgcccagctc tgcggtgtgt tcctgcagtc agccagggcc agcaagaggc ctgagctcca
     2161 ttcgcgggtc gaggggtcaa gcgaaggtgc tggcttgcct accagcgtgg aacgggagag
     2221 agggtcccgg aaaccaagac gctatttttc tcctggtgaa agtagaaaga cttctgagag
     2281 atttagaact caacccataa cctcagcaga acgaaaggaa tcggataggt caacttcaaa
     2341 ttcagaaatg ccagctgccg aggatgaaga gaaggtcgat gagcgagcca ggctgagcgt
     2401 tgctgcgaag aggctgctct tcagggaaat ggaaaagtca tttgacgaga agaacgtccc
     2461 gaagcgccgc tccaggaatg cagccgtaga gcagaggcta cggcgtctgc aggaccgatc
     2521 ccacacgcag cctgtcacca ccgaggaggt ggtcatcgca gccacactgc aggcatctgc
     2581 tcaccagaag gcgttagcca gagaccaggc gaatgagggc aaagattctg ccgagcaagg
     2641 agaacctgac ctctccaccc tgagcttagc ggagaagttg gccttgttta acaaactgtc
     2701 ccagccggtc tcaaaagcga tttcaacgcg gaacagatta gacgtgagac acaggaggat
     2761 gaatgctcgc tatcagaccc agccggtcac gcttggagag gtggaacagg tgcaaagtgg
     2821 caagctcagc cctttctgcc ccactgttaa cacatctgtg tccaccccgg catctaccgt
     2881 cacccccacg tacgcaggga atcttcggac aaagccaccg ctggatgaca gctctggtgc
     2941 cgctgagcag aagtttcctt cttcgctaga aagttcagac tctccagtta gaagcatcct
     3001 gaaatcccag ggctggcagt cttcggtaga ggctggtggg agcaaaggaa tgtcgagaga
     3061 atttgaagag acagaaagca aaggagtctt gacaggtgga gatggtggtg ttacaaagta
     3121 cgggtccttc gaggaagcag agccatccta ccccatgctt agcagagtcc gggaaggaaa
     3181 tggccataag gaacccatct atgctgttcc gagaaaggga agcctggagc tcgcccatcc
     3241 tcccgcggct cagttcggcg acgaaccgaa ggaattttcc actgcacaaa gcaccgcaca
     3301 ggggagcccg gactggaagg acaggcagct ctttgaagag aaggtggacg tggagaatgt
     3361 cacgaagagg aagttttcgc tgaaagcggc agagttcatg gatcccactt ctgagcagac
     3421 aggcgcagct gctgggagac cggtcgctca gactgcaacc cccgtgtcct ggaagcagca
     3481 agatccctct gaacagccgc aggagaagcg ctgtcggagt ccgtgtgcag tgtttgctgc
     3541 tgaagagatc aaagcaccag cggcggaggg catcctcgac tctcccagca aaaccatgtc
     3601 cattaaagaa agattagcac tgttgaagaa aagtggtgag gaagactgga gaaacagact
     3661 taacaggaag caggagtatg gcaaagcgtc cgtcaccagc agcctgcaca tccaggaaac
     3721 gggacagtcg ctcaagaaga aggaagaagg agcattgaca gatgataatg ccgtttctaa
     3781 tctgctctgg cgggtcacag aaagtcgaga gagccagatg acgattgaag agaggaagca
     3841 tctcatcacc gtgagagagg acgcctggaa gaccagaggc cgaggggcag ccaacgactc
     3901 cacccagttt accgtggccg gcaggatggt gaagcgaggt ctggcgtccc ccactgccat
     3961 caccccagta gcgtccccta tctgcagtag aacgaggggc accacgccag tttccagacc
     4021 cctggaagat atcgaagcca gaccagacat gcagttagaa tcagacctca agttggacag
     4081 gctggaaacc tttctaagaa ggctgaataa caaagttggt gggatgcaag aaacggtcct
     4141 caccgtcacc gggaaatccg tgaaagaggt gatgaagccg gacgatgagg aaacctttgc
     4201 caagttctac cgcagcatgg attccgctct accgagaagc cccgtggagc tggacgagga
     4261 ctttgatgtc attttcgatc cttatgcccc caagttgaca tcctctgtgg ctgagcacaa
     4321 gcgtgcagtg aggcccaagc gccgggttca ggcttccaaa aaccccctga agatgctggc
     4381 ggcaagggaa gatctcctcc aggggtacac ggagcagaga ctgaacgtgg ccttcgtgga
     4441 atcaaagcgt atgaaagtcg aaaagatgtc tgccagctcc aacttctccg aagtcaccct
     4501 ggcgggatta gccagcaaag aaaacttcag caacgtcagc ctgcggagcg tcaacctgac
     4561 ggaacagaat tccaacaata gcgcggtgcc ctacaaaaag ctgatgctgt tacagattaa
     4621 aggaagaaga cacgtgcaga cgcggctggt ggaacctcgc gcctcttccc tcaacagcgg
     4681 ggactgcttc ctcgcgctgt ccccccacca ctgcttcctg tgggtcggag agtttgccaa
     4741 cgtcatagag aaggcgaagg cctcagaact cgcaagttta attcagacca agagggaact
     4801 tggttgtaga gctacttata tccaaactat cgaagaagga attaacacac acactcatgc
     4861 agccaaagac ttctggaagc ttctgggtgg ccaaaccagt taccagtctg ctggagaccc
     4921 aaaggaagat gagctctatg aaacggccat aatagaaacc aactgcattt accgactaat
     4981 ggatgacaaa ctcgttcctg atgacgacta ctgggggaag attccaaagt gctccctcct
     5041 gcaggcaaga caggtcctgg tgtttgattt tgggagcgaa gtttacgtgt ggcacgggaa
     5101 agaggtcaca ttagcgcaac ggaaaatagc ctttcagctg gcaaagcact tatggaacgg
     5161 aacctttgac tacgagaact gtgacatcaa ccccctggac cctggagagt gcaacccgct
     5221 cattcccaga aaaggacagg ggcggccgga ctgggcgata tttgggagac ttacagaaca
     5281 caacgagacg attttgttca aagagaaatt tctcgactgg acggaactga agagacctaa
     5341 cgagaagaac gccagcgaac ttgcccagca caaggacgac ccgcgggcgg aggtcaagcc
     5401 ttacgacgtg acgcggatgg tgccggtgcc ccagacgaca gccggcaccg tgctagacgg
     5461 ggtcaacgtg ggccggggct acggcctggt gcaaggggac gaccgcaggc agttggagat
     5521 cgccagcctg tcggtggacg tctggcacat cctggaattc gactacagca ggctccccaa
     5581 gcagagcatt gggcagttcc acgagggcga cgcctacgtg gtcaagtgga agttcatcgt
     5641 gagcacggca gtgggaagtc ggcagaaggg cgagcacccg gtcagggtgg ccggcaaaga
     5701 gaagcgtgtc tacttcttct ggcaaggccg gcagtcgact gtgagtgaga agggcacgtc
     5761 ggctctgatg acggtgcagc tggacgagga aaggggagcc caggtccagg tcctgcaggg
     5821 caaggagccc ccctgttttc tgcagtgttt ccagggaggg atggtggtcc actccgggag
     5881 acgggaggag gaggaagaca acgcacagag cgagtggagg ctgtactgcg tgcgcggaga
     5941 agtgcccgtg gaagggaact tgctggaggt ggcctgtcac tgcagcagcc tgaggtccag
     6001 gacgtccatg gtcgtcctca acgtccacaa agccctcatc tacctatggc acggatgcaa
     6061 agcccaggcc cacacgaagg aggtcggaag gaccgcggcc aataaaatca aggaacagtg
     6121 tcccctggag gcggggctgc actgcagcag caaagtggcg gttcacgagt gtgacgaagg
     6181 attggagccc ccgggattct ggggcgccct gggcaggagg gaccggaagg cctacgactg
     6241 catgctccaa gatcctggaa attttaactt cacgccccgc ctgttcatcc tcagtagctc
     6301 ctctggcgac ttctcagcca ccgagttcat gtatccagcc cgagacccct ctgtggtcaa
     6361 ttctatgccc ttcctgcagg aagacctgta cagcgccccg caaccagcac ttttccttgt
     6421 tgacaatcac cacgaggtgt acctctggca gggctggtgg cccgtggaga acaagatcac
     6481 cggctccgcc cgcatccgct gggcctcgga ccggaagagc gccatggaga cggtgctgca
     6541 gtactgccga ggaaaaaacc tcaagaagcc gccccccaag tcttacctca tccacgccgg
     6601 tctggagccc ctgaccttca ccaacatgtt tcccagctgg gagcacagag aagacattgc
     6661 agaaatcaca gaaatggaca cggaagtttc aaatcagatc accctggtgg aggatgtctt
     6721 agccaagctg tgcaaaacca tttatccact ggccgacctc ctagccaggc ccctgcccga
     6781 gggagttgac cctctgaagc tggagattta tctcaccgac gaggacttcg agtttgcact
     6841 agacatgacc cgagacgaat acaatgcact gcctgcctgg aagcaggtga acctgaagaa
     6901 agcaaaaggt ctgttctgag tcatgagatg ctggaggaaa cctctgttgt cactttcaat
     6961 actgttggac caggaaaatg gatgtgtttt gtttttggaa gcggggtatg gctagtcctt
     7021 taaaaaatat tttacatctg cgttttcgag acctgaagcg atcagctctc ctgcttgttt
     7081 gggagttgtg cattttgtaa atgttccaga aaactctctg gaaacacacc ttccacgatt
     7141 gagcagacga tgtttataag gcatccgcag ccccacgcgc gctcacgcag ggggtcctca
     7201 gcgaaggcca cggcactgcc ctcctggtcc tgctaagcgc tgcctgttat tactttttaa
     7261 gcggttccct ttataaattg ttattttgat agtttgtgga ttctaaatat atatatattt
     7321 atataaacac cgtataaatc aaatatgtat ttaacaaagc aatacgtatt cattcacttt
     7381 taagggtttt tttcgtgtca aaataacatt aaaaggtagt tgcttctgtt gaattagttc
     7441 tgccaccaac gcgtaccttc acccacgttc agaggcgcct ccttcagcgt taagtcggac
     7501 tcgttctgag tgctgcttcc ggtgctaagt tgaacaaaga aactatactt ccaggcacag
     7561 gctcttaaga atctgtgcga atccaccttt ctaccttaat atcgcccccc gaatgtatag
     7621 tgccttgtgt tatgtacagt ttatatacag aagagtttgc tctgcatttt ttgacgatgg
     7681 tttggaacat catctacaat tttacgctga aatggtagaa attttaaaaa gaatctcaat
     7741 ttctaatacc tgttgtaaaa attaaatgtg tcattcggcg atggaagact ccaaaataaa
     7801 agcttcagaa taaacacgac ta
//
LOCUS       XM_032618931            6916 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus supervillin (SVIL), transcript variant
            X5, mRNA.
ACCESSION   XM_032618931
VERSION     XM_032618931.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6916
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6916
                     /gene="SVIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747094"
     CDS             506..6013
                     /gene="SVIL"
                     /codon_start=1
                     /product="supervillin isoform X3"
                     /protein_id="XP_032474822.1"
                     /db_xref="GeneID:116747094"
                     /translation="MKRKERIARRLEGIEADTQPILLQSCTGLVSHRLLEEDLPRYTR
                     ATDPASPHIGQSNEEEETLDSSLEKQTRSKHCTESSSIHGDSPYGSSIMDTQSLESKA
                     ERIARYKAERRRQLAEKYGLTLDPEGDAESPSRYSKSRKDTETAEKRGGKSDRSAESS
                     KDSGASYSRTEIPGLRSCMAGSKDHALHRRDGVSDTEVLLNVENQRRGQEPSATGPAQ
                     DLPPAGEGSASFPFSGRDCALGEVPRSPKPMHSLPSPSPGQPASPSHSTGDLPLPAEA
                     RASTGKPKHEWFLQKDSEGDTPSLINWPSRSTSNSEMPAAEDEEKVDERARLSVAAKR
                     LLFREMEKSFDEKNVPKRRSRNAAVEQRLRRLQDRSHTQPVTTEEVVIAATLQASAHQ
                     KALARDQANEGKDSAEQGEPDLSTLSLAEKLALFNKLSQPVSKAISTRNRLDVRHRRM
                     NARYQTQPVTLGEVEQVQSGKLSPFCPTVNTSVSTPASTVTPTYAGNLRTKPPLDDSS
                     GAAEQKFPSSLESSDSPVRSILKSQGWQSSVEAGGSKGMSREFEETESKGVLTGGDGG
                     VTKYGSFEEAEPSYPMLSRVREGNGHKEPIYAVPRKGSLELAHPPAAQFGDEPKEFST
                     AQSTAQGSPDWKDRQLFEEKVDVENVTKRKFSLKAAEFMDPTSEQTGAAAGRPVAQTA
                     TPVSWKQQDPSEQPQEKRCRSPCAVFAAEEIKAPAAEGILDSPSKTMSIKERLALLKK
                     SGEEDWRNRLNRKQEYGKASVTSSLHIQETGQSLKKKEEGALTDDNAVSNLLWRVTES
                     RESQMTIEERKHLITVREDAWKTRGRGAANDSTQFTVAGRMVKRGLASPTAITPVASP
                     ICSRTRGTTPVSRPLEDIEARPDMQLESDLKLDRLETFLRRLNNKVGGMQETVLTVTG
                     KSVKEVMKPDDEETFAKFYRSMDSALPRSPVELDEDFDVIFDPYAPKLTSSVAEHKRA
                     VRPKRRVQASKNPLKMLAAREDLLQGYTEQRLNVAFVESKRMKVEKMSASSNFSEVTL
                     AGLASKENFSNVSLRSVNLTEQNSNNSAVPYKKLMLLQIKGRRHVQTRLVEPRASSLN
                     SGDCFLALSPHHCFLWVGEFANVIEKAKASELASLIQTKRELGCRATYIQTIEEGINT
                     HTHAAKDFWKLLGGQTSYQSAGDPKEDELYETAIIETNCIYRLMDDKLVPDDDYWGKI
                     PKCSLLQARQVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTFDYENCDINPL
                     DPGECNPLIPRKGQGRPDWAIFGRLTEHNETILFKEKFLDWTELKRPNEKNASELAQH
                     KDDPRAEVKPYDVTRMVPVPQTTAGTVLDGVNVGRGYGLVQGDDRRQLEIASLSVDVW
                     HILEFDYSRLPKQSIGQFHEGDAYVVKWKFIVSTAVGSRQKGEHPVRVAGKEKRVYFF
                     WQGRQSTVSEKGTSALMTVQLDEERGAQVQVLQGKEPPCFLQCFQGGMVVHSGRREEE
                     EDNAQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVHKALIYLWHGCKAQ
                     AHTKEVGRTAANKIKEQCPLEAGLHCSSKVAVHECDEGLEPPGFWGALGRRDRKAYDC
                     MLQDPGNFNFTPRLFILSSSSGDFSATEFMYPARDPSVVNSMPFLQEDLYSAPQPALF
                     LVDNHHEVYLWQGWWPVENKITGSARIRWASDRKSAMETVLQYCRGKNLKKPPPKSYL
                     IHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLCKTIYPLADLL
                     ARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF"
     misc_feature    3692..3982
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 2-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S2_like; cd11289"
                     /db_xref="CDD:200445"
     misc_feature    4055..4357
                     /gene="SVIL"
                     /note="Tandemly repeated domains found in gelsolin,
                     severin, villin, and related proteins; Region:
                     gelsolin_like; cd11280"
                     /db_xref="CDD:200436"
     misc_feature    4604..4945
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 4-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S4_like; cd11293"
                     /db_xref="CDD:200449"
     misc_feature    order(4652..4657,4817..4819,4835..4840,4844..4852,
                     4856..4864,4868..4873,4895..4897,4901..4903)
                     /gene="SVIL"
                     /note="putative actin binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    4916..4918
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    5003..5320
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 5-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S5_like; cd11288"
                     /db_xref="CDD:200444"
     misc_feature    5027..5029
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200444"
     misc_feature    5369..5737
                     /gene="SVIL"
                     /note="Actin depolymerization factor/cofilin- and
                     gelsolin-like domains; Region: ADF_gelsolin; cl15697"
                     /db_xref="CDD:472830"
     misc_feature    5903..6010
                     /gene="SVIL"
                     /note="Villin headpiece domain; Region: VHP; pfam02209"
                     /db_xref="CDD:460493"
ORIGIN      
        1 tctgttgaag tgagtaaagg agcgcaggca gcagcgtgca aggtgatttg cagccggtgg
       61 ggagtctggc ggatggaaag tccaagcgaa tgacatctct gaggagctgc cctgaggacc
      121 cgttttggtc gttggttgcg ccctcccggg aggtcacaag gaggaggggc aggaggcaga
      181 ctcttctaga acctctgtgc cacgaagagt tggagtacat gagctagaag actgggagag
      241 cggagacagg gagagtttcg aagtccttct ctatcagaag ccatgattta aacatcacca
      301 ttacgatttg aacaagaaaa acgtaagcct tgctggattc ccacgtcaaa gaatagttcc
      361 aagctttcag gaagagttct tgcttgaaga caaagaaccg cttgctaacc acaaaagagg
      421 aatcgatgct cagcttttag ctgccctccc taaagttgca gaattaagaa aactctttga
      481 accaaagagg aaagaatttt cagacatgaa aagaaaagaa agaattgcca ggcgcctaga
      541 aggaatcgaa gccgacacgc agcccatcct cttgcagagc tgcacgggct tagtgagtca
      601 tcgtctgctg gaggaggacc tgcccagata cacgcgcgcc acagacccag ccagtcctca
      661 catcggccaa tcaaatgaag aggaagaaac tttggattct tccttagaaa agcagactcg
      721 atccaaacac tgcacagaat cctcgagcat ccatggtgac tccccctacg gttccagcat
      781 catggacacc cagagcctag aatccaaagc cgaaaggatc gccagataca aagcagagag
      841 gagacggcag ctggcagaaa agtatgggct caccctggac ccggaaggcg acgccgaatc
      901 tccatctcga tacagcaagt ccaggaagga cactgagact gctgagaaaa ggggaggaaa
      961 aagtgaccgc tctgctgagt ccagcaaaga ttcgggcgct tcctactcca ggaccgagat
     1021 cccggggctc aggagctgca tggctgggtc caaggaccat gccctccacc ggcgcgatgg
     1081 tgtttccgac acagaggtgc tgctcaacgt agaaaaccaa agacgaggtc aagagcccag
     1141 tgccaccggg ccagcccaag acctgccccc cgcgggggag ggctccgcat ccttcccatt
     1201 ctccgggcga gactgcgccc tcggtgaagt gccaaggtcc ccaaagccaa tgcacagcct
     1261 gcccagcccg tcacctgggc agccagcctc tccgagccac tccacaggtg acctgccact
     1321 ccctgccgag gctcgagcca gtaccgggaa acccaagcat gagtggtttc tccagaaaga
     1381 ttccgaaggg gacacacctt cacttatcaa ctggccttcc aggtcaactt caaattcaga
     1441 aatgccagct gccgaggatg aagagaaggt cgatgagcga gccaggctga gcgttgctgc
     1501 gaagaggctg ctcttcaggg aaatggaaaa gtcatttgac gagaagaacg tcccgaagcg
     1561 ccgctccagg aatgcagccg tagagcagag gctacggcgt ctgcaggacc gatcccacac
     1621 gcagcctgtc accaccgagg aggtggtcat cgcagccaca ctgcaggcat ctgctcacca
     1681 gaaggcgtta gccagagacc aggcgaatga gggcaaagat tctgccgagc aaggagaacc
     1741 tgacctctcc accctgagct tagcggagaa gttggccttg tttaacaaac tgtcccagcc
     1801 ggtctcaaaa gcgatttcaa cgcggaacag attagacgtg agacacagga ggatgaatgc
     1861 tcgctatcag acccagccgg tcacgcttgg agaggtggaa caggtgcaaa gtggcaagct
     1921 cagccctttc tgccccactg ttaacacatc tgtgtccacc ccggcatcta ccgtcacccc
     1981 cacgtacgca gggaatcttc ggacaaagcc accgctggat gacagctctg gtgccgctga
     2041 gcagaagttt ccttcttcgc tagaaagttc agactctcca gttagaagca tcctgaaatc
     2101 ccagggctgg cagtcttcgg tagaggctgg tgggagcaaa ggaatgtcga gagaatttga
     2161 agagacagaa agcaaaggag tcttgacagg tggagatggt ggtgttacaa agtacgggtc
     2221 cttcgaggaa gcagagccat cctaccccat gcttagcaga gtccgggaag gaaatggcca
     2281 taaggaaccc atctatgctg ttccgagaaa gggaagcctg gagctcgccc atcctcccgc
     2341 ggctcagttc ggcgacgaac cgaaggaatt ttccactgca caaagcaccg cacaggggag
     2401 cccggactgg aaggacaggc agctctttga agagaaggtg gacgtggaga atgtcacgaa
     2461 gaggaagttt tcgctgaaag cggcagagtt catggatccc acttctgagc agacaggcgc
     2521 agctgctggg agaccggtcg ctcagactgc aacccccgtg tcctggaagc agcaagatcc
     2581 ctctgaacag ccgcaggaga agcgctgtcg gagtccgtgt gcagtgtttg ctgctgaaga
     2641 gatcaaagca ccagcggcgg agggcatcct cgactctccc agcaaaacca tgtccattaa
     2701 agaaagatta gcactgttga agaaaagtgg tgaggaagac tggagaaaca gacttaacag
     2761 gaagcaggag tatggcaaag cgtccgtcac cagcagcctg cacatccagg aaacgggaca
     2821 gtcgctcaag aagaaggaag aaggagcatt gacagatgat aatgccgttt ctaatctgct
     2881 ctggcgggtc acagaaagtc gagagagcca gatgacgatt gaagagagga agcatctcat
     2941 caccgtgaga gaggacgcct ggaagaccag aggccgaggg gcagccaacg actccaccca
     3001 gtttaccgtg gccggcagga tggtgaagcg aggtctggcg tcccccactg ccatcacccc
     3061 agtagcgtcc cctatctgca gtagaacgag gggcaccacg ccagtttcca gacccctgga
     3121 agatatcgaa gccagaccag acatgcagtt agaatcagac ctcaagttgg acaggctgga
     3181 aacctttcta agaaggctga ataacaaagt tggtgggatg caagaaacgg tcctcaccgt
     3241 caccgggaaa tccgtgaaag aggtgatgaa gccggacgat gaggaaacct ttgccaagtt
     3301 ctaccgcagc atggattccg ctctaccgag aagccccgtg gagctggacg aggactttga
     3361 tgtcattttc gatccttatg cccccaagtt gacatcctct gtggctgagc acaagcgtgc
     3421 agtgaggccc aagcgccggg ttcaggcttc caaaaacccc ctgaagatgc tggcggcaag
     3481 ggaagatctc ctccaggggt acacggagca gagactgaac gtggccttcg tggaatcaaa
     3541 gcgtatgaaa gtcgaaaaga tgtctgccag ctccaacttc tccgaagtca ccctggcggg
     3601 attagccagc aaagaaaact tcagcaacgt cagcctgcgg agcgtcaacc tgacggaaca
     3661 gaattccaac aatagcgcgg tgccctacaa aaagctgatg ctgttacaga ttaaaggaag
     3721 aagacacgtg cagacgcggc tggtggaacc tcgcgcctct tccctcaaca gcggggactg
     3781 cttcctcgcg ctgtcccccc accactgctt cctgtgggtc ggagagtttg ccaacgtcat
     3841 agagaaggcg aaggcctcag aactcgcaag tttaattcag accaagaggg aacttggttg
     3901 tagagctact tatatccaaa ctatcgaaga aggaattaac acacacactc atgcagccaa
     3961 agacttctgg aagcttctgg gtggccaaac cagttaccag tctgctggag acccaaagga
     4021 agatgagctc tatgaaacgg ccataataga aaccaactgc atttaccgac taatggatga
     4081 caaactcgtt cctgatgacg actactgggg gaagattcca aagtgctccc tcctgcaggc
     4141 aagacaggtc ctggtgtttg attttgggag cgaagtttac gtgtggcacg ggaaagaggt
     4201 cacattagcg caacggaaaa tagcctttca gctggcaaag cacttatgga acggaacctt
     4261 tgactacgag aactgtgaca tcaaccccct ggaccctgga gagtgcaacc cgctcattcc
     4321 cagaaaagga caggggcggc cggactgggc gatatttggg agacttacag aacacaacga
     4381 gacgattttg ttcaaagaga aatttctcga ctggacggaa ctgaagagac ctaacgagaa
     4441 gaacgccagc gaacttgccc agcacaagga cgacccgcgg gcggaggtca agccttacga
     4501 cgtgacgcgg atggtgccgg tgccccagac gacagccggc accgtgctag acggggtcaa
     4561 cgtgggccgg ggctacggcc tggtgcaagg ggacgaccgc aggcagttgg agatcgccag
     4621 cctgtcggtg gacgtctggc acatcctgga attcgactac agcaggctcc ccaagcagag
     4681 cattgggcag ttccacgagg gcgacgccta cgtggtcaag tggaagttca tcgtgagcac
     4741 ggcagtggga agtcggcaga agggcgagca cccggtcagg gtggccggca aagagaagcg
     4801 tgtctacttc ttctggcaag gccggcagtc gactgtgagt gagaagggca cgtcggctct
     4861 gatgacggtg cagctggacg aggaaagggg agcccaggtc caggtcctgc agggcaagga
     4921 gcccccctgt tttctgcagt gtttccaggg agggatggtg gtccactccg ggagacggga
     4981 ggaggaggaa gacaacgcac agagcgagtg gaggctgtac tgcgtgcgcg gagaagtgcc
     5041 cgtggaaggg aacttgctgg aggtggcctg tcactgcagc agcctgaggt ccaggacgtc
     5101 catggtcgtc ctcaacgtcc acaaagccct catctaccta tggcacggat gcaaagccca
     5161 ggcccacacg aaggaggtcg gaaggaccgc ggccaataaa atcaaggaac agtgtcccct
     5221 ggaggcgggg ctgcactgca gcagcaaagt ggcggttcac gagtgtgacg aaggattgga
     5281 gcccccggga ttctggggcg ccctgggcag gagggaccgg aaggcctacg actgcatgct
     5341 ccaagatcct ggaaatttta acttcacgcc ccgcctgttc atcctcagta gctcctctgg
     5401 cgacttctca gccaccgagt tcatgtatcc agcccgagac ccctctgtgg tcaattctat
     5461 gcccttcctg caggaagacc tgtacagcgc cccgcaacca gcacttttcc ttgttgacaa
     5521 tcaccacgag gtgtacctct ggcagggctg gtggcccgtg gagaacaaga tcaccggctc
     5581 cgcccgcatc cgctgggcct cggaccggaa gagcgccatg gagacggtgc tgcagtactg
     5641 ccgaggaaaa aacctcaaga agccgccccc caagtcttac ctcatccacg ccggtctgga
     5701 gcccctgacc ttcaccaaca tgtttcccag ctgggagcac agagaagaca ttgcagaaat
     5761 cacagaaatg gacacggaag tttcaaatca gatcaccctg gtggaggatg tcttagccaa
     5821 gctgtgcaaa accatttatc cactggccga cctcctagcc aggcccctgc ccgagggagt
     5881 tgaccctctg aagctggaga tttatctcac cgacgaggac ttcgagtttg cactagacat
     5941 gacccgagac gaatacaatg cactgcctgc ctggaagcag gtgaacctga agaaagcaaa
     6001 aggtctgttc tgagtcatga gatgctggag gaaacctctg ttgtcacttt caatactgtt
     6061 ggaccaggaa aatggatgtg ttttgttttt ggaagcgggg tatggctagt cctttaaaaa
     6121 atattttaca tctgcgtttt cgagacctga agcgatcagc tctcctgctt gtttgggagt
     6181 tgtgcatttt gtaaatgttc cagaaaactc tctggaaaca caccttccac gattgagcag
     6241 acgatgttta taaggcatcc gcagccccac gcgcgctcac gcagggggtc ctcagcgaag
     6301 gccacggcac tgccctcctg gtcctgctaa gcgctgcctg ttattacttt ttaagcggtt
     6361 ccctttataa attgttattt tgatagtttg tggattctaa atatatatat atttatataa
     6421 acaccgtata aatcaaatat gtatttaaca aagcaatacg tattcattca cttttaaggg
     6481 tttttttcgt gtcaaaataa cattaaaagg tagttgcttc tgttgaatta gttctgccac
     6541 caacgcgtac cttcacccac gttcagaggc gcctccttca gcgttaagtc ggactcgttc
     6601 tgagtgctgc ttccggtgct aagttgaaca aagaaactat acttccaggc acaggctctt
     6661 aagaatctgt gcgaatccac ctttctacct taatatcgcc ccccgaatgt atagtgcctt
     6721 gtgttatgta cagtttatat acagaagagt ttgctctgca ttttttgacg atggtttgga
     6781 acatcatcta caattttacg ctgaaatggt agaaatttta aaaagaatct caatttctaa
     6841 tacctgttgt aaaaattaaa tgtgtcattc ggcgatggaa gactccaaaa taaaagcttc
     6901 agaataaaca cgacta
//
LOCUS       XM_032618936            6835 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus supervillin (SVIL), transcript variant
            X6, mRNA.
ACCESSION   XM_032618936
VERSION     XM_032618936.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6835
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6835
                     /gene="SVIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 18 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747094"
     CDS             506..5932
                     /gene="SVIL"
                     /codon_start=1
                     /product="supervillin isoform X4"
                     /protein_id="XP_032474827.1"
                     /db_xref="GeneID:116747094"
                     /translation="MKRKERIARRLEGIEADTQPILLQSCTGLVSHRLLEEDLPRYTR
                     ATDPASPHIGQSNEEEETLDSSLEKQTRSKHCTESSSIHGDSPYGSSIMDTQSLESKA
                     ERIARYKAERRRQLAEKYGLTLDPEGDAESPSRYSKSRKDTETAEKRGGKSDRSAESS
                     KDSGASYSRTEIPGLRSCMAGSKDHALHRRDGVSDTEVLLNVENQRRGQEPSATGPAQ
                     DLPPAGEGSASFPFSGRDCALGEVPRSPKPMHSLPSPSPGQPASPSHSTGDLPLPAEA
                     RARSTSNSEMPAAEDEEKVDERARLSVAAKRLLFREMEKSFDEKNVPKRRSRNAAVEQ
                     RLRRLQDRSHTQPVTTEEVVIAATLQASAHQKALARDQANEGKDSAEQGEPDLSTLSL
                     AEKLALFNKLSQPVSKAISTRNRLDVRHRRMNARYQTQPVTLGEVEQVQSGKLSPFCP
                     TVNTSVSTPASTVTPTYAGNLRTKPPLDDSSGAAEQKFPSSLESSDSPVRSILKSQGW
                     QSSVEAGGSKGMSREFEETESKGVLTGGDGGVTKYGSFEEAEPSYPMLSRVREGNGHK
                     EPIYAVPRKGSLELAHPPAAQFGDEPKEFSTAQSTAQGSPDWKDRQLFEEKVDVENVT
                     KRKFSLKAAEFMDPTSEQTGAAAGRPVAQTATPVSWKQQDPSEQPQEKRCRSPCAVFA
                     AEEIKAPAAEGILDSPSKTMSIKERLALLKKSGEEDWRNRLNRKQEYGKASVTSSLHI
                     QETGQSLKKKEEGALTDDNAVSNLLWRVTESRESQMTIEERKHLITVREDAWKTRGRG
                     AANDSTQFTVAGRMVKRGLASPTAITPVASPICSRTRGTTPVSRPLEDIEARPDMQLE
                     SDLKLDRLETFLRRLNNKVGGMQETVLTVTGKSVKEVMKPDDEETFAKFYRSMDSALP
                     RSPVELDEDFDVIFDPYAPKLTSSVAEHKRAVRPKRRVQASKNPLKMLAAREDLLQGY
                     TEQRLNVAFVESKRMKVEKMSASSNFSEVTLAGLASKENFSNVSLRSVNLTEQNSNNS
                     AVPYKKLMLLQIKGRRHVQTRLVEPRASSLNSGDCFLALSPHHCFLWVGEFANVIEKA
                     KASELASLIQTKRELGCRATYIQTIEEGINTHTHAAKDFWKLLGGQTSYQSAGDPKED
                     ELYETAIIETNCIYRLMDDKLVPDDDYWGKIPKCSLLQARQVLVFDFGSEVYVWHGKE
                     VTLAQRKIAFQLAKHLWNGTFDYENCDINPLDPGECNPLIPRKGQGRPDWAIFGRLTE
                     HNETILFKEKFLDWTELKRPNEKNASELAQHKDDPRAEVKPYDVTRMVPVPQTTAGTV
                     LDGVNVGRGYGLVQGDDRRQLEIASLSVDVWHILEFDYSRLPKQSIGQFHEGDAYVVK
                     WKFIVSTAVGSRQKGEHPVRVAGKEKRVYFFWQGRQSTVSEKGTSALMTVQLDEERGA
                     QVQVLQGKEPPCFLQCFQGGMVVHSGRREEEEDNAQSEWRLYCVRGEVPVEGNLLEVA
                     CHCSSLRSRTSMVVLNVHKALIYLWHGCKAQAHTKEVGRTAANKIKEQCPLEAGLHCS
                     SKVAVHECDEGLEPPGFWGALGRRDRKAYDCMLQDPGNFNFTPRLFILSSSSGDFSAT
                     EFMYPARDPSVVNSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWPVENKITGSARI
                     RWASDRKSAMETVLQYCRGKNLKKPPPKSYLIHAGLEPLTFTNMFPSWEHREDIAEIT
                     EMDTEVSNQITLVEDVLAKLCKTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALD
                     MTRDEYNALPAWKQVNLKKAKGLF"
     misc_feature    881..>1429
                     /gene="SVIL"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    3611..3901
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 2-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S2_like; cd11289"
                     /db_xref="CDD:200445"
     misc_feature    3974..4276
                     /gene="SVIL"
                     /note="Tandemly repeated domains found in gelsolin,
                     severin, villin, and related proteins; Region:
                     gelsolin_like; cd11280"
                     /db_xref="CDD:200436"
     misc_feature    4523..4864
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 4-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S4_like; cd11293"
                     /db_xref="CDD:200449"
     misc_feature    order(4571..4576,4736..4738,4754..4759,4763..4771,
                     4775..4783,4787..4792,4814..4816,4820..4822)
                     /gene="SVIL"
                     /note="putative actin binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    4835..4837
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    4922..5239
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 5-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S5_like; cd11288"
                     /db_xref="CDD:200444"
     misc_feature    4946..4948
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200444"
     misc_feature    5288..5656
                     /gene="SVIL"
                     /note="Actin depolymerization factor/cofilin- and
                     gelsolin-like domains; Region: ADF_gelsolin; cl15697"
                     /db_xref="CDD:472830"
     misc_feature    5822..5929
                     /gene="SVIL"
                     /note="Villin headpiece domain; Region: VHP; pfam02209"
                     /db_xref="CDD:460493"
ORIGIN      
        1 tctgttgaag tgagtaaagg agcgcaggca gcagcgtgca aggtgatttg cagccggtgg
       61 ggagtctggc ggatggaaag tccaagcgaa tgacatctct gaggagctgc cctgaggacc
      121 cgttttggtc gttggttgcg ccctcccggg aggtcacaag gaggaggggc aggaggcaga
      181 ctcttctaga acctctgtgc cacgaagagt tggagtacat gagctagaag actgggagag
      241 cggagacagg gagagtttcg aagtccttct ctatcagaag ccatgattta aacatcacca
      301 ttacgatttg aacaagaaaa acgtaagcct tgctggattc ccacgtcaaa gaatagttcc
      361 aagctttcag gaagagttct tgcttgaaga caaagaaccg cttgctaacc acaaaagagg
      421 aatcgatgct cagcttttag ctgccctccc taaagttgca gaattaagaa aactctttga
      481 accaaagagg aaagaatttt cagacatgaa aagaaaagaa agaattgcca ggcgcctaga
      541 aggaatcgaa gccgacacgc agcccatcct cttgcagagc tgcacgggct tagtgagtca
      601 tcgtctgctg gaggaggacc tgcccagata cacgcgcgcc acagacccag ccagtcctca
      661 catcggccaa tcaaatgaag aggaagaaac tttggattct tccttagaaa agcagactcg
      721 atccaaacac tgcacagaat cctcgagcat ccatggtgac tccccctacg gttccagcat
      781 catggacacc cagagcctag aatccaaagc cgaaaggatc gccagataca aagcagagag
      841 gagacggcag ctggcagaaa agtatgggct caccctggac ccggaaggcg acgccgaatc
      901 tccatctcga tacagcaagt ccaggaagga cactgagact gctgagaaaa ggggaggaaa
      961 aagtgaccgc tctgctgagt ccagcaaaga ttcgggcgct tcctactcca ggaccgagat
     1021 cccggggctc aggagctgca tggctgggtc caaggaccat gccctccacc ggcgcgatgg
     1081 tgtttccgac acagaggtgc tgctcaacgt agaaaaccaa agacgaggtc aagagcccag
     1141 tgccaccggg ccagcccaag acctgccccc cgcgggggag ggctccgcat ccttcccatt
     1201 ctccgggcga gactgcgccc tcggtgaagt gccaaggtcc ccaaagccaa tgcacagcct
     1261 gcccagcccg tcacctgggc agccagcctc tccgagccac tccacaggtg acctgccact
     1321 ccctgccgag gctcgagcca ggtcaacttc aaattcagaa atgccagctg ccgaggatga
     1381 agagaaggtc gatgagcgag ccaggctgag cgttgctgcg aagaggctgc tcttcaggga
     1441 aatggaaaag tcatttgacg agaagaacgt cccgaagcgc cgctccagga atgcagccgt
     1501 agagcagagg ctacggcgtc tgcaggaccg atcccacacg cagcctgtca ccaccgagga
     1561 ggtggtcatc gcagccacac tgcaggcatc tgctcaccag aaggcgttag ccagagacca
     1621 ggcgaatgag ggcaaagatt ctgccgagca aggagaacct gacctctcca ccctgagctt
     1681 agcggagaag ttggccttgt ttaacaaact gtcccagccg gtctcaaaag cgatttcaac
     1741 gcggaacaga ttagacgtga gacacaggag gatgaatgct cgctatcaga cccagccggt
     1801 cacgcttgga gaggtggaac aggtgcaaag tggcaagctc agccctttct gccccactgt
     1861 taacacatct gtgtccaccc cggcatctac cgtcaccccc acgtacgcag ggaatcttcg
     1921 gacaaagcca ccgctggatg acagctctgg tgccgctgag cagaagtttc cttcttcgct
     1981 agaaagttca gactctccag ttagaagcat cctgaaatcc cagggctggc agtcttcggt
     2041 agaggctggt gggagcaaag gaatgtcgag agaatttgaa gagacagaaa gcaaaggagt
     2101 cttgacaggt ggagatggtg gtgttacaaa gtacgggtcc ttcgaggaag cagagccatc
     2161 ctaccccatg cttagcagag tccgggaagg aaatggccat aaggaaccca tctatgctgt
     2221 tccgagaaag ggaagcctgg agctcgccca tcctcccgcg gctcagttcg gcgacgaacc
     2281 gaaggaattt tccactgcac aaagcaccgc acaggggagc ccggactgga aggacaggca
     2341 gctctttgaa gagaaggtgg acgtggagaa tgtcacgaag aggaagtttt cgctgaaagc
     2401 ggcagagttc atggatccca cttctgagca gacaggcgca gctgctggga gaccggtcgc
     2461 tcagactgca acccccgtgt cctggaagca gcaagatccc tctgaacagc cgcaggagaa
     2521 gcgctgtcgg agtccgtgtg cagtgtttgc tgctgaagag atcaaagcac cagcggcgga
     2581 gggcatcctc gactctccca gcaaaaccat gtccattaaa gaaagattag cactgttgaa
     2641 gaaaagtggt gaggaagact ggagaaacag acttaacagg aagcaggagt atggcaaagc
     2701 gtccgtcacc agcagcctgc acatccagga aacgggacag tcgctcaaga agaaggaaga
     2761 aggagcattg acagatgata atgccgtttc taatctgctc tggcgggtca cagaaagtcg
     2821 agagagccag atgacgattg aagagaggaa gcatctcatc accgtgagag aggacgcctg
     2881 gaagaccaga ggccgagggg cagccaacga ctccacccag tttaccgtgg ccggcaggat
     2941 ggtgaagcga ggtctggcgt cccccactgc catcacccca gtagcgtccc ctatctgcag
     3001 tagaacgagg ggcaccacgc cagtttccag acccctggaa gatatcgaag ccagaccaga
     3061 catgcagtta gaatcagacc tcaagttgga caggctggaa acctttctaa gaaggctgaa
     3121 taacaaagtt ggtgggatgc aagaaacggt cctcaccgtc accgggaaat ccgtgaaaga
     3181 ggtgatgaag ccggacgatg aggaaacctt tgccaagttc taccgcagca tggattccgc
     3241 tctaccgaga agccccgtgg agctggacga ggactttgat gtcattttcg atccttatgc
     3301 ccccaagttg acatcctctg tggctgagca caagcgtgca gtgaggccca agcgccgggt
     3361 tcaggcttcc aaaaaccccc tgaagatgct ggcggcaagg gaagatctcc tccaggggta
     3421 cacggagcag agactgaacg tggccttcgt ggaatcaaag cgtatgaaag tcgaaaagat
     3481 gtctgccagc tccaacttct ccgaagtcac cctggcggga ttagccagca aagaaaactt
     3541 cagcaacgtc agcctgcgga gcgtcaacct gacggaacag aattccaaca atagcgcggt
     3601 gccctacaaa aagctgatgc tgttacagat taaaggaaga agacacgtgc agacgcggct
     3661 ggtggaacct cgcgcctctt ccctcaacag cggggactgc ttcctcgcgc tgtcccccca
     3721 ccactgcttc ctgtgggtcg gagagtttgc caacgtcata gagaaggcga aggcctcaga
     3781 actcgcaagt ttaattcaga ccaagaggga acttggttgt agagctactt atatccaaac
     3841 tatcgaagaa ggaattaaca cacacactca tgcagccaaa gacttctgga agcttctggg
     3901 tggccaaacc agttaccagt ctgctggaga cccaaaggaa gatgagctct atgaaacggc
     3961 cataatagaa accaactgca tttaccgact aatggatgac aaactcgttc ctgatgacga
     4021 ctactggggg aagattccaa agtgctccct cctgcaggca agacaggtcc tggtgtttga
     4081 ttttgggagc gaagtttacg tgtggcacgg gaaagaggtc acattagcgc aacggaaaat
     4141 agcctttcag ctggcaaagc acttatggaa cggaaccttt gactacgaga actgtgacat
     4201 caaccccctg gaccctggag agtgcaaccc gctcattccc agaaaaggac aggggcggcc
     4261 ggactgggcg atatttggga gacttacaga acacaacgag acgattttgt tcaaagagaa
     4321 atttctcgac tggacggaac tgaagagacc taacgagaag aacgccagcg aacttgccca
     4381 gcacaaggac gacccgcggg cggaggtcaa gccttacgac gtgacgcgga tggtgccggt
     4441 gccccagacg acagccggca ccgtgctaga cggggtcaac gtgggccggg gctacggcct
     4501 ggtgcaaggg gacgaccgca ggcagttgga gatcgccagc ctgtcggtgg acgtctggca
     4561 catcctggaa ttcgactaca gcaggctccc caagcagagc attgggcagt tccacgaggg
     4621 cgacgcctac gtggtcaagt ggaagttcat cgtgagcacg gcagtgggaa gtcggcagaa
     4681 gggcgagcac ccggtcaggg tggccggcaa agagaagcgt gtctacttct tctggcaagg
     4741 ccggcagtcg actgtgagtg agaagggcac gtcggctctg atgacggtgc agctggacga
     4801 ggaaagggga gcccaggtcc aggtcctgca gggcaaggag cccccctgtt ttctgcagtg
     4861 tttccaggga gggatggtgg tccactccgg gagacgggag gaggaggaag acaacgcaca
     4921 gagcgagtgg aggctgtact gcgtgcgcgg agaagtgccc gtggaaggga acttgctgga
     4981 ggtggcctgt cactgcagca gcctgaggtc caggacgtcc atggtcgtcc tcaacgtcca
     5041 caaagccctc atctacctat ggcacggatg caaagcccag gcccacacga aggaggtcgg
     5101 aaggaccgcg gccaataaaa tcaaggaaca gtgtcccctg gaggcggggc tgcactgcag
     5161 cagcaaagtg gcggttcacg agtgtgacga aggattggag cccccgggat tctggggcgc
     5221 cctgggcagg agggaccgga aggcctacga ctgcatgctc caagatcctg gaaattttaa
     5281 cttcacgccc cgcctgttca tcctcagtag ctcctctggc gacttctcag ccaccgagtt
     5341 catgtatcca gcccgagacc cctctgtggt caattctatg cccttcctgc aggaagacct
     5401 gtacagcgcc ccgcaaccag cacttttcct tgttgacaat caccacgagg tgtacctctg
     5461 gcagggctgg tggcccgtgg agaacaagat caccggctcc gcccgcatcc gctgggcctc
     5521 ggaccggaag agcgccatgg agacggtgct gcagtactgc cgaggaaaaa acctcaagaa
     5581 gccgcccccc aagtcttacc tcatccacgc cggtctggag cccctgacct tcaccaacat
     5641 gtttcccagc tgggagcaca gagaagacat tgcagaaatc acagaaatgg acacggaagt
     5701 ttcaaatcag atcaccctgg tggaggatgt cttagccaag ctgtgcaaaa ccatttatcc
     5761 actggccgac ctcctagcca ggcccctgcc cgagggagtt gaccctctga agctggagat
     5821 ttatctcacc gacgaggact tcgagtttgc actagacatg acccgagacg aatacaatgc
     5881 actgcctgcc tggaagcagg tgaacctgaa gaaagcaaaa ggtctgttct gagtcatgag
     5941 atgctggagg aaacctctgt tgtcactttc aatactgttg gaccaggaaa atggatgtgt
     6001 tttgtttttg gaagcggggt atggctagtc ctttaaaaaa tattttacat ctgcgttttc
     6061 gagacctgaa gcgatcagct ctcctgcttg tttgggagtt gtgcattttg taaatgttcc
     6121 agaaaactct ctggaaacac accttccacg attgagcaga cgatgtttat aaggcatccg
     6181 cagccccacg cgcgctcacg cagggggtcc tcagcgaagg ccacggcact gccctcctgg
     6241 tcctgctaag cgctgcctgt tattactttt taagcggttc cctttataaa ttgttatttt
     6301 gatagtttgt ggattctaaa tatatatata tttatataaa caccgtataa atcaaatatg
     6361 tatttaacaa agcaatacgt attcattcac ttttaagggt ttttttcgtg tcaaaataac
     6421 attaaaaggt agttgcttct gttgaattag ttctgccacc aacgcgtacc ttcacccacg
     6481 ttcagaggcg cctccttcag cgttaagtcg gactcgttct gagtgctgct tccggtgcta
     6541 agttgaacaa agaaactata cttccaggca caggctctta agaatctgtg cgaatccacc
     6601 tttctacctt aatatcgccc cccgaatgta tagtgccttg tgttatgtac agtttatata
     6661 cagaagagtt tgctctgcat tttttgacga tggtttggaa catcatctac aattttacgc
     6721 tgaaatggta gaaattttaa aaagaatctc aatttctaat acctgttgta aaaattaaat
     6781 gtgtcattcg gcgatggaag actccaaaat aaaagcttca gaataaacac gacta
//
LOCUS       XM_032618938            6785 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus supervillin (SVIL), transcript variant
            X7, mRNA.
ACCESSION   XM_032618938
VERSION     XM_032618938.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6785
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6785
                     /gene="SVIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 20 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747094"
     CDS             504..5882
                     /gene="SVIL"
                     /codon_start=1
                     /product="supervillin isoform X5"
                     /protein_id="XP_032474829.1"
                     /db_xref="GeneID:116747094"
                     /translation="MKRKERIARRLEGIEADTQPILLQSCTGLVSHRLLEEDLPRYTR
                     ATDPASPHIGQSNEEEETLDSSLEKQTRSKHCTESSSIHGDSPYGSSIMDTQSLESKA
                     ERIARYKAERRRQLAEKYGLTLDPEGDAESPSRYSKSRKDTETAEKRGGKSDRSAESS
                     KDSGASYSRTEIPGLRSCMAGSKDHALHRRDGVSDTEVLLNVENQRRGQEPSATGPAQ
                     DLPPAGEGSASFPFSGRDCALGEVPRSPKPMHSLPSPSPGQPASPSHSTGDLPLPAEA
                     RARSTSNSEMPAAEDEEKVDERARLSVAAKRLLFREMEKSFDEKNVPKRRSRNAAVEQ
                     RLRRLQDRSHTQPVTTEEVVIAATLQASAHQKALARDQANEGKDSAEQGEPDLSTLSL
                     AEKLALFNKLSQPVSKAISTRNRLDVRHRRMNARYQTQPVTLGEVEQVQSGKLSPFCP
                     TVNTSVSTPASTVTPTYAGNLRTKPPLDDSSGAAEQKFPSSLESSDSPVRSILKSQGW
                     QSSVEAGGSKGMSREFEETESKGVLTGGDGGVTKYGSFEEAEPSYPMLSRVREGNGHK
                     EPIYAVPRKGSLELAHPPAAQFGDEPKEFSTAQSTAQGSPDWKDRQLFEEKVDVENVT
                     KRKFSLKAAEFMDPTSEQTGAAAGRPVAQTATPVSWKQQDPSEQPQEKRCRSPCAVFA
                     AEEIKAPAAEGILDSPSKTMSIKERLALLKKSGEEDWRNRLNRKQEYGKASVTSSLHI
                     QETGQSLKKKRVTESRESQMTIEERKHLITVREDAWKTRGRGAANDSTQFTVAGRMVK
                     RGLASPTAITPVASPICSRTRGTTPVSRPLEDIEARPDMQLESDLKLDRLETFLRRLN
                     NKVGGMQETVLTVTGKSVKEVMKPDDEETFAKFYRSMDSALPRSPVELDEDFDVIFDP
                     YAPKLTSSVAEHKRAVRPKRRVQASKNPLKMLAAREDLLQGYTEQRLNVAFVESKRMK
                     VEKMSASSNFSEVTLAGLASKENFSNVSLRSVNLTEQNSNNSAVPYKKLMLLQIKGRR
                     HVQTRLVEPRASSLNSGDCFLALSPHHCFLWVGEFANVIEKAKASELASLIQTKRELG
                     CRATYIQTIEEGINTHTHAAKDFWKLLGGQTSYQSAGDPKEDELYETAIIETNCIYRL
                     MDDKLVPDDDYWGKIPKCSLLQARQVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHL
                     WNGTFDYENCDINPLDPGECNPLIPRKGQGRPDWAIFGRLTEHNETILFKEKFLDWTE
                     LKRPNEKNASELAQHKDDPRAEVKPYDVTRMVPVPQTTAGTVLDGVNVGRGYGLVQGD
                     DRRQLEIASLSVDVWHILEFDYSRLPKQSIGQFHEGDAYVVKWKFIVSTAVGSRQKGE
                     HPVRVAGKEKRVYFFWQGRQSTVSEKGTSALMTVQLDEERGAQVQVLQGKEPPCFLQC
                     FQGGMVVHSGRREEEEDNAQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLN
                     VHKALIYLWHGCKAQAHTKEVGRTAANKIKEQCPLEAGLHCSSKVAVHECDEGLEPPG
                     FWGALGRRDRKAYDCMLQDPGNFNFTPRLFILSSSSGDFSATEFMYPARDPSVVNSMP
                     FLQEDLYSAPQPALFLVDNHHEVYLWQGWWPVENKITGSARIRWASDRKSAMETVLQY
                     CRGKNLKKPPPKSYLIHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDV
                     LAKLCKTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVN
                     LKKAKGLF"
     misc_feature    879..>1427
                     /gene="SVIL"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    3561..3851
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 2-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S2_like; cd11289"
                     /db_xref="CDD:200445"
     misc_feature    3924..4226
                     /gene="SVIL"
                     /note="Tandemly repeated domains found in gelsolin,
                     severin, villin, and related proteins; Region:
                     gelsolin_like; cd11280"
                     /db_xref="CDD:200436"
     misc_feature    4473..4814
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 4-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S4_like; cd11293"
                     /db_xref="CDD:200449"
     misc_feature    order(4521..4526,4686..4688,4704..4709,4713..4721,
                     4725..4733,4737..4742,4764..4766,4770..4772)
                     /gene="SVIL"
                     /note="putative actin binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    4785..4787
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    4872..5189
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 5-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S5_like; cd11288"
                     /db_xref="CDD:200444"
     misc_feature    4896..4898
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200444"
     misc_feature    5238..5606
                     /gene="SVIL"
                     /note="Actin depolymerization factor/cofilin- and
                     gelsolin-like domains; Region: ADF_gelsolin; cl15697"
                     /db_xref="CDD:472830"
     misc_feature    5772..5879
                     /gene="SVIL"
                     /note="Villin headpiece domain; Region: VHP; pfam02209"
                     /db_xref="CDD:460493"
ORIGIN      
        1 tgttgaagtg agtaaaggag cgcaggcagc agcgtgcaag gtgatttgca gccggtgggg
       61 agtctggcgg atggaaagtc caagcgaatg acatctctga ggagctgccc tgaggacccg
      121 ttttggtcgt tggttgcgcc ctcccgggag gtcacaagga ggaggggcag gaggcagact
      181 cttctagaac ctctgtgcca cgaagagttg gagtacatga gctagaagac tgggagagcg
      241 gagacaggga gagtttcgaa gtccttctct atcagaagcc atgatttaaa catcaccatt
      301 acgatttgaa caagaaaaac gtaagccttg ctggattccc acgtcaaaga atagttccaa
      361 gctttcagga agagttcttg cttgaagaca aagaaccgct tgctaaccac aaaagaggaa
      421 tcgatgctca gcttttagct gccctcccta aagttgcaga attaagaaaa ctctttgaac
      481 caaagaggaa agaattttca gacatgaaaa gaaaagaaag aattgccagg cgcctagaag
      541 gaatcgaagc cgacacgcag cccatcctct tgcagagctg cacgggctta gtgagtcatc
      601 gtctgctgga ggaggacctg cccagataca cgcgcgccac agacccagcc agtcctcaca
      661 tcggccaatc aaatgaagag gaagaaactt tggattcttc cttagaaaag cagactcgat
      721 ccaaacactg cacagaatcc tcgagcatcc atggtgactc cccctacggt tccagcatca
      781 tggacaccca gagcctagaa tccaaagccg aaaggatcgc cagatacaaa gcagagagga
      841 gacggcagct ggcagaaaag tatgggctca ccctggaccc ggaaggcgac gccgaatctc
      901 catctcgata cagcaagtcc aggaaggaca ctgagactgc tgagaaaagg ggaggaaaaa
      961 gtgaccgctc tgctgagtcc agcaaagatt cgggcgcttc ctactccagg accgagatcc
     1021 cggggctcag gagctgcatg gctgggtcca aggaccatgc cctccaccgg cgcgatggtg
     1081 tttccgacac agaggtgctg ctcaacgtag aaaaccaaag acgaggtcaa gagcccagtg
     1141 ccaccgggcc agcccaagac ctgccccccg cgggggaggg ctccgcatcc ttcccattct
     1201 ccgggcgaga ctgcgccctc ggtgaagtgc caaggtcccc aaagccaatg cacagcctgc
     1261 ccagcccgtc acctgggcag ccagcctctc cgagccactc cacaggtgac ctgccactcc
     1321 ctgccgaggc tcgagccagg tcaacttcaa attcagaaat gccagctgcc gaggatgaag
     1381 agaaggtcga tgagcgagcc aggctgagcg ttgctgcgaa gaggctgctc ttcagggaaa
     1441 tggaaaagtc atttgacgag aagaacgtcc cgaagcgccg ctccaggaat gcagccgtag
     1501 agcagaggct acggcgtctg caggaccgat cccacacgca gcctgtcacc accgaggagg
     1561 tggtcatcgc agccacactg caggcatctg ctcaccagaa ggcgttagcc agagaccagg
     1621 cgaatgaggg caaagattct gccgagcaag gagaacctga cctctccacc ctgagcttag
     1681 cggagaagtt ggccttgttt aacaaactgt cccagccggt ctcaaaagcg atttcaacgc
     1741 ggaacagatt agacgtgaga cacaggagga tgaatgctcg ctatcagacc cagccggtca
     1801 cgcttggaga ggtggaacag gtgcaaagtg gcaagctcag ccctttctgc cccactgtta
     1861 acacatctgt gtccaccccg gcatctaccg tcacccccac gtacgcaggg aatcttcgga
     1921 caaagccacc gctggatgac agctctggtg ccgctgagca gaagtttcct tcttcgctag
     1981 aaagttcaga ctctccagtt agaagcatcc tgaaatccca gggctggcag tcttcggtag
     2041 aggctggtgg gagcaaagga atgtcgagag aatttgaaga gacagaaagc aaaggagtct
     2101 tgacaggtgg agatggtggt gttacaaagt acgggtcctt cgaggaagca gagccatcct
     2161 accccatgct tagcagagtc cgggaaggaa atggccataa ggaacccatc tatgctgttc
     2221 cgagaaaggg aagcctggag ctcgcccatc ctcccgcggc tcagttcggc gacgaaccga
     2281 aggaattttc cactgcacaa agcaccgcac aggggagccc ggactggaag gacaggcagc
     2341 tctttgaaga gaaggtggac gtggagaatg tcacgaagag gaagttttcg ctgaaagcgg
     2401 cagagttcat ggatcccact tctgagcaga caggcgcagc tgctgggaga ccggtcgctc
     2461 agactgcaac ccccgtgtcc tggaagcagc aagatccctc tgaacagccg caggagaagc
     2521 gctgtcggag tccgtgtgca gtgtttgctg ctgaagagat caaagcacca gcggcggagg
     2581 gcatcctcga ctctcccagc aaaaccatgt ccattaaaga aagattagca ctgttgaaga
     2641 aaagtggtga ggaagactgg agaaacagac ttaacaggaa gcaggagtat ggcaaagcgt
     2701 ccgtcaccag cagcctgcac atccaggaaa cgggacagtc gctcaagaag aagcgggtca
     2761 cagaaagtcg agagagccag atgacgattg aagagaggaa gcatctcatc accgtgagag
     2821 aggacgcctg gaagaccaga ggccgagggg cagccaacga ctccacccag tttaccgtgg
     2881 ccggcaggat ggtgaagcga ggtctggcgt cccccactgc catcacccca gtagcgtccc
     2941 ctatctgcag tagaacgagg ggcaccacgc cagtttccag acccctggaa gatatcgaag
     3001 ccagaccaga catgcagtta gaatcagacc tcaagttgga caggctggaa acctttctaa
     3061 gaaggctgaa taacaaagtt ggtgggatgc aagaaacggt cctcaccgtc accgggaaat
     3121 ccgtgaaaga ggtgatgaag ccggacgatg aggaaacctt tgccaagttc taccgcagca
     3181 tggattccgc tctaccgaga agccccgtgg agctggacga ggactttgat gtcattttcg
     3241 atccttatgc ccccaagttg acatcctctg tggctgagca caagcgtgca gtgaggccca
     3301 agcgccgggt tcaggcttcc aaaaaccccc tgaagatgct ggcggcaagg gaagatctcc
     3361 tccaggggta cacggagcag agactgaacg tggccttcgt ggaatcaaag cgtatgaaag
     3421 tcgaaaagat gtctgccagc tccaacttct ccgaagtcac cctggcggga ttagccagca
     3481 aagaaaactt cagcaacgtc agcctgcgga gcgtcaacct gacggaacag aattccaaca
     3541 atagcgcggt gccctacaaa aagctgatgc tgttacagat taaaggaaga agacacgtgc
     3601 agacgcggct ggtggaacct cgcgcctctt ccctcaacag cggggactgc ttcctcgcgc
     3661 tgtcccccca ccactgcttc ctgtgggtcg gagagtttgc caacgtcata gagaaggcga
     3721 aggcctcaga actcgcaagt ttaattcaga ccaagaggga acttggttgt agagctactt
     3781 atatccaaac tatcgaagaa ggaattaaca cacacactca tgcagccaaa gacttctgga
     3841 agcttctggg tggccaaacc agttaccagt ctgctggaga cccaaaggaa gatgagctct
     3901 atgaaacggc cataatagaa accaactgca tttaccgact aatggatgac aaactcgttc
     3961 ctgatgacga ctactggggg aagattccaa agtgctccct cctgcaggca agacaggtcc
     4021 tggtgtttga ttttgggagc gaagtttacg tgtggcacgg gaaagaggtc acattagcgc
     4081 aacggaaaat agcctttcag ctggcaaagc acttatggaa cggaaccttt gactacgaga
     4141 actgtgacat caaccccctg gaccctggag agtgcaaccc gctcattccc agaaaaggac
     4201 aggggcggcc ggactgggcg atatttggga gacttacaga acacaacgag acgattttgt
     4261 tcaaagagaa atttctcgac tggacggaac tgaagagacc taacgagaag aacgccagcg
     4321 aacttgccca gcacaaggac gacccgcggg cggaggtcaa gccttacgac gtgacgcgga
     4381 tggtgccggt gccccagacg acagccggca ccgtgctaga cggggtcaac gtgggccggg
     4441 gctacggcct ggtgcaaggg gacgaccgca ggcagttgga gatcgccagc ctgtcggtgg
     4501 acgtctggca catcctggaa ttcgactaca gcaggctccc caagcagagc attgggcagt
     4561 tccacgaggg cgacgcctac gtggtcaagt ggaagttcat cgtgagcacg gcagtgggaa
     4621 gtcggcagaa gggcgagcac ccggtcaggg tggccggcaa agagaagcgt gtctacttct
     4681 tctggcaagg ccggcagtcg actgtgagtg agaagggcac gtcggctctg atgacggtgc
     4741 agctggacga ggaaagggga gcccaggtcc aggtcctgca gggcaaggag cccccctgtt
     4801 ttctgcagtg tttccaggga gggatggtgg tccactccgg gagacgggag gaggaggaag
     4861 acaacgcaca gagcgagtgg aggctgtact gcgtgcgcgg agaagtgccc gtggaaggga
     4921 acttgctgga ggtggcctgt cactgcagca gcctgaggtc caggacgtcc atggtcgtcc
     4981 tcaacgtcca caaagccctc atctacctat ggcacggatg caaagcccag gcccacacga
     5041 aggaggtcgg aaggaccgcg gccaataaaa tcaaggaaca gtgtcccctg gaggcggggc
     5101 tgcactgcag cagcaaagtg gcggttcacg agtgtgacga aggattggag cccccgggat
     5161 tctggggcgc cctgggcagg agggaccgga aggcctacga ctgcatgctc caagatcctg
     5221 gaaattttaa cttcacgccc cgcctgttca tcctcagtag ctcctctggc gacttctcag
     5281 ccaccgagtt catgtatcca gcccgagacc cctctgtggt caattctatg cccttcctgc
     5341 aggaagacct gtacagcgcc ccgcaaccag cacttttcct tgttgacaat caccacgagg
     5401 tgtacctctg gcagggctgg tggcccgtgg agaacaagat caccggctcc gcccgcatcc
     5461 gctgggcctc ggaccggaag agcgccatgg agacggtgct gcagtactgc cgaggaaaaa
     5521 acctcaagaa gccgcccccc aagtcttacc tcatccacgc cggtctggag cccctgacct
     5581 tcaccaacat gtttcccagc tgggagcaca gagaagacat tgcagaaatc acagaaatgg
     5641 acacggaagt ttcaaatcag atcaccctgg tggaggatgt cttagccaag ctgtgcaaaa
     5701 ccatttatcc actggccgac ctcctagcca ggcccctgcc cgagggagtt gaccctctga
     5761 agctggagat ttatctcacc gacgaggact tcgagtttgc actagacatg acccgagacg
     5821 aatacaatgc actgcctgcc tggaagcagg tgaacctgaa gaaagcaaaa ggtctgttct
     5881 gagtcatgag atgctggagg aaacctctgt tgtcactttc aatactgttg gaccaggaaa
     5941 atggatgtgt tttgtttttg gaagcggggt atggctagtc ctttaaaaaa tattttacat
     6001 ctgcgttttc gagacctgaa gcgatcagct ctcctgcttg tttgggagtt gtgcattttg
     6061 taaatgttcc agaaaactct ctggaaacac accttccacg attgagcaga cgatgtttat
     6121 aaggcatccg cagccccacg cgcgctcacg cagggggtcc tcagcgaagg ccacggcact
     6181 gccctcctgg tcctgctaag cgctgcctgt tattactttt taagcggttc cctttataaa
     6241 ttgttatttt gatagtttgt ggattctaaa tatatatata tttatataaa caccgtataa
     6301 atcaaatatg tatttaacaa agcaatacgt attcattcac ttttaagggt ttttttcgtg
     6361 tcaaaataac attaaaaggt agttgcttct gttgaattag ttctgccacc aacgcgtacc
     6421 ttcacccacg ttcagaggcg cctccttcag cgttaagtcg gactcgttct gagtgctgct
     6481 tccggtgcta agttgaacaa agaaactata cttccaggca caggctctta agaatctgtg
     6541 cgaatccacc tttctacctt aatatcgccc cccgaatgta tagtgccttg tgttatgtac
     6601 agtttatata cagaagagtt tgctctgcat tttttgacga tggtttggaa catcatctac
     6661 aattttacgc tgaaatggta gaaattttaa aaagaatctc aatttctaat acctgttgta
     6721 aaaattaaat gtgtcattcg gcgatggaag actccaaaat aaaagcttca gaataaacac
     6781 gacta
//
LOCUS       XM_032618942            5479 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus supervillin (SVIL), transcript variant
            X8, mRNA.
ACCESSION   XM_032618942
VERSION     XM_032618942.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5479
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5479
                     /gene="SVIL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 17 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747094"
     CDS             86..4576
                     /gene="SVIL"
                     /codon_start=1
                     /product="supervillin isoform X6"
                     /protein_id="XP_032474833.1"
                     /db_xref="GeneID:116747094"
                     /translation="MEKSFDEKNVPKRRSRNAAVEQRLRRLQDRSHTQPVTTEEVVIA
                     ATLQASAHQKALARDQANEGKDSAEQGEPDLSTLSLAEKLALFNKLSQPVSKAISTRN
                     RLDVRHRRMNARYQTQPVTLGEVEQVQSGKLSPFCPTVNTSVSTPASTVTPTYAGNLR
                     TKPPLDDSSGAAEQKFPSSLESSDSPVRSILKSQGWQSSVEAGGSKGMSREFEETESK
                     GVLTGGDGGVTKYGSFEEAEPSYPMLSRVREGNGHKEPIYAVPRKGSLELAHPPAAQF
                     GDEPKEFSTAQSTAQGSPDWKDRQLFEEKVDVENVTKRKFSLKAAEFMDPTSEQTGAA
                     AGRPVAQTATPVSWKQQDPSEQPQEKRCRSPCAVFAAEEIKAPAAEGILDSPSKTMSI
                     KERLALLKKSGEEDWRNRLNRKQEYGKASVTSSLHIQETGQSLKKKEEGALTDDNAVS
                     NLLWRVTESRESQMTIEERKHLITVREDAWKTRGRGAANDSTQFTVAGRMVKRGLASP
                     TAITPVASPICSRTRGTTPVSRPLEDIEARPDMQLESDLKLDRLETFLRRLNNKVGGM
                     QETVLTVTGKSVKEVMKPDDEETFAKFYRSMDSALPRSPVELDEDFDVIFDPYAPKLT
                     SSVAEHKRAVRPKRRVQASKNPLKMLAAREDLLQGYTEQRLNVAFVESKRMKVEKMSA
                     SSNFSEVTLAGLASKENFSNVSLRSVNLTEQNSNNSAVPYKKLMLLQIKGRRHVQTRL
                     VEPRASSLNSGDCFLALSPHHCFLWVGEFANVIEKAKASELASLIQTKRELGCRATYI
                     QTIEEGINTHTHAAKDFWKLLGGQTSYQSAGDPKEDELYETAIIETNCIYRLMDDKLV
                     PDDDYWGKIPKCSLLQARQVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTFD
                     YENCDINPLDPGECNPLIPRKGQGRPDWAIFGRLTEHNETILFKEKFLDWTELKRPNE
                     KNASELAQHKDDPRAEVKPYDVTRMVPVPQTTAGTVLDGVNVGRGYGLVQGDDRRQLE
                     IASLSVDVWHILEFDYSRLPKQSIGQFHEGDAYVVKWKFIVSTAVGSRQKGEHPVRVA
                     GKEKRVYFFWQGRQSTVSEKGTSALMTVQLDEERGAQVQVLQGKEPPCFLQCFQGGMV
                     VHSGRREEEEDNAQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVHKALI
                     YLWHGCKAQAHTKEVGRTAANKIKEQCPLEAGLHCSSKVAVHECDEGLEPPGFWGALG
                     RRDRKAYDCMLQDPGNFNFTPRLFILSSSSGDFSATEFMYPARDPSVVNSMPFLQEDL
                     YSAPQPALFLVDNHHEVYLWQGWWPVENKITGSARIRWASDRKSAMETVLQYCRGKNL
                     KKPPPKSYLIHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLCK
                     TIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG
                     LF"
     misc_feature    2255..2545
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 2-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S2_like; cd11289"
                     /db_xref="CDD:200445"
     misc_feature    2618..2920
                     /gene="SVIL"
                     /note="Tandemly repeated domains found in gelsolin,
                     severin, villin, and related proteins; Region:
                     gelsolin_like; cd11280"
                     /db_xref="CDD:200436"
     misc_feature    3167..3508
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 4-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S4_like; cd11293"
                     /db_xref="CDD:200449"
     misc_feature    order(3215..3220,3380..3382,3398..3403,3407..3415,
                     3419..3427,3431..3436,3458..3460,3464..3466)
                     /gene="SVIL"
                     /note="putative actin binding interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    3479..3481
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200449"
     misc_feature    3566..3883
                     /gene="SVIL"
                     /note="Gelsolin sub-domain 5-like domain found in
                     gelsolin, severin, villin, and related proteins; Region:
                     gelsolin_S5_like; cd11288"
                     /db_xref="CDD:200444"
     misc_feature    3590..3592
                     /gene="SVIL"
                     /note="putative nucleotide binding residue [chemical
                     binding]; other site"
                     /db_xref="CDD:200444"
     misc_feature    3932..4300
                     /gene="SVIL"
                     /note="Actin depolymerization factor/cofilin- and
                     gelsolin-like domains; Region: ADF_gelsolin; cl15697"
                     /db_xref="CDD:472830"
     misc_feature    4466..4573
                     /gene="SVIL"
                     /note="Villin headpiece domain; Region: VHP; pfam02209"
                     /db_xref="CDD:460493"
ORIGIN      
        1 cctgccgagg ctcgagccag atgaagagaa ggtcgatgag cgagccaggc tgagcgttgc
       61 tgcgaagagg ctgctcttca gggaaatgga aaagtcattt gacgagaaga acgtcccgaa
      121 gcgccgctcc aggaatgcag ccgtagagca gaggctacgg cgtctgcagg accgatccca
      181 cacgcagcct gtcaccaccg aggaggtggt catcgcagcc acactgcagg catctgctca
      241 ccagaaggcg ttagccagag accaggcgaa tgagggcaaa gattctgccg agcaaggaga
      301 acctgacctc tccaccctga gcttagcgga gaagttggcc ttgtttaaca aactgtccca
      361 gccggtctca aaagcgattt caacgcggaa cagattagac gtgagacaca ggaggatgaa
      421 tgctcgctat cagacccagc cggtcacgct tggagaggtg gaacaggtgc aaagtggcaa
      481 gctcagccct ttctgcccca ctgttaacac atctgtgtcc accccggcat ctaccgtcac
      541 ccccacgtac gcagggaatc ttcggacaaa gccaccgctg gatgacagct ctggtgccgc
      601 tgagcagaag tttccttctt cgctagaaag ttcagactct ccagttagaa gcatcctgaa
      661 atcccagggc tggcagtctt cggtagaggc tggtgggagc aaaggaatgt cgagagaatt
      721 tgaagagaca gaaagcaaag gagtcttgac aggtggagat ggtggtgtta caaagtacgg
      781 gtccttcgag gaagcagagc catcctaccc catgcttagc agagtccggg aaggaaatgg
      841 ccataaggaa cccatctatg ctgttccgag aaagggaagc ctggagctcg cccatcctcc
      901 cgcggctcag ttcggcgacg aaccgaagga attttccact gcacaaagca ccgcacaggg
      961 gagcccggac tggaaggaca ggcagctctt tgaagagaag gtggacgtgg agaatgtcac
     1021 gaagaggaag ttttcgctga aagcggcaga gttcatggat cccacttctg agcagacagg
     1081 cgcagctgct gggagaccgg tcgctcagac tgcaaccccc gtgtcctgga agcagcaaga
     1141 tccctctgaa cagccgcagg agaagcgctg tcggagtccg tgtgcagtgt ttgctgctga
     1201 agagatcaaa gcaccagcgg cggagggcat cctcgactct cccagcaaaa ccatgtccat
     1261 taaagaaaga ttagcactgt tgaagaaaag tggtgaggaa gactggagaa acagacttaa
     1321 caggaagcag gagtatggca aagcgtccgt caccagcagc ctgcacatcc aggaaacggg
     1381 acagtcgctc aagaagaagg aagaaggagc attgacagat gataatgccg tttctaatct
     1441 gctctggcgg gtcacagaaa gtcgagagag ccagatgacg attgaagaga ggaagcatct
     1501 catcaccgtg agagaggacg cctggaagac cagaggccga ggggcagcca acgactccac
     1561 ccagtttacc gtggccggca ggatggtgaa gcgaggtctg gcgtccccca ctgccatcac
     1621 cccagtagcg tcccctatct gcagtagaac gaggggcacc acgccagttt ccagacccct
     1681 ggaagatatc gaagccagac cagacatgca gttagaatca gacctcaagt tggacaggct
     1741 ggaaaccttt ctaagaaggc tgaataacaa agttggtggg atgcaagaaa cggtcctcac
     1801 cgtcaccggg aaatccgtga aagaggtgat gaagccggac gatgaggaaa cctttgccaa
     1861 gttctaccgc agcatggatt ccgctctacc gagaagcccc gtggagctgg acgaggactt
     1921 tgatgtcatt ttcgatcctt atgcccccaa gttgacatcc tctgtggctg agcacaagcg
     1981 tgcagtgagg cccaagcgcc gggttcaggc ttccaaaaac cccctgaaga tgctggcggc
     2041 aagggaagat ctcctccagg ggtacacgga gcagagactg aacgtggcct tcgtggaatc
     2101 aaagcgtatg aaagtcgaaa agatgtctgc cagctccaac ttctccgaag tcaccctggc
     2161 gggattagcc agcaaagaaa acttcagcaa cgtcagcctg cggagcgtca acctgacgga
     2221 acagaattcc aacaatagcg cggtgcccta caaaaagctg atgctgttac agattaaagg
     2281 aagaagacac gtgcagacgc ggctggtgga acctcgcgcc tcttccctca acagcgggga
     2341 ctgcttcctc gcgctgtccc cccaccactg cttcctgtgg gtcggagagt ttgccaacgt
     2401 catagagaag gcgaaggcct cagaactcgc aagtttaatt cagaccaaga gggaacttgg
     2461 ttgtagagct acttatatcc aaactatcga agaaggaatt aacacacaca ctcatgcagc
     2521 caaagacttc tggaagcttc tgggtggcca aaccagttac cagtctgctg gagacccaaa
     2581 ggaagatgag ctctatgaaa cggccataat agaaaccaac tgcatttacc gactaatgga
     2641 tgacaaactc gttcctgatg acgactactg ggggaagatt ccaaagtgct ccctcctgca
     2701 ggcaagacag gtcctggtgt ttgattttgg gagcgaagtt tacgtgtggc acgggaaaga
     2761 ggtcacatta gcgcaacgga aaatagcctt tcagctggca aagcacttat ggaacggaac
     2821 ctttgactac gagaactgtg acatcaaccc cctggaccct ggagagtgca acccgctcat
     2881 tcccagaaaa ggacaggggc ggccggactg ggcgatattt gggagactta cagaacacaa
     2941 cgagacgatt ttgttcaaag agaaatttct cgactggacg gaactgaaga gacctaacga
     3001 gaagaacgcc agcgaacttg cccagcacaa ggacgacccg cgggcggagg tcaagcctta
     3061 cgacgtgacg cggatggtgc cggtgcccca gacgacagcc ggcaccgtgc tagacggggt
     3121 caacgtgggc cggggctacg gcctggtgca aggggacgac cgcaggcagt tggagatcgc
     3181 cagcctgtcg gtggacgtct ggcacatcct ggaattcgac tacagcaggc tccccaagca
     3241 gagcattggg cagttccacg agggcgacgc ctacgtggtc aagtggaagt tcatcgtgag
     3301 cacggcagtg ggaagtcggc agaagggcga gcacccggtc agggtggccg gcaaagagaa
     3361 gcgtgtctac ttcttctggc aaggccggca gtcgactgtg agtgagaagg gcacgtcggc
     3421 tctgatgacg gtgcagctgg acgaggaaag gggagcccag gtccaggtcc tgcagggcaa
     3481 ggagcccccc tgttttctgc agtgtttcca gggagggatg gtggtccact ccgggagacg
     3541 ggaggaggag gaagacaacg cacagagcga gtggaggctg tactgcgtgc gcggagaagt
     3601 gcccgtggaa gggaacttgc tggaggtggc ctgtcactgc agcagcctga ggtccaggac
     3661 gtccatggtc gtcctcaacg tccacaaagc cctcatctac ctatggcacg gatgcaaagc
     3721 ccaggcccac acgaaggagg tcggaaggac cgcggccaat aaaatcaagg aacagtgtcc
     3781 cctggaggcg gggctgcact gcagcagcaa agtggcggtt cacgagtgtg acgaaggatt
     3841 ggagcccccg ggattctggg gcgccctggg caggagggac cggaaggcct acgactgcat
     3901 gctccaagat cctggaaatt ttaacttcac gccccgcctg ttcatcctca gtagctcctc
     3961 tggcgacttc tcagccaccg agttcatgta tccagcccga gacccctctg tggtcaattc
     4021 tatgcccttc ctgcaggaag acctgtacag cgccccgcaa ccagcacttt tccttgttga
     4081 caatcaccac gaggtgtacc tctggcaggg ctggtggccc gtggagaaca agatcaccgg
     4141 ctccgcccgc atccgctggg cctcggaccg gaagagcgcc atggagacgg tgctgcagta
     4201 ctgccgagga aaaaacctca agaagccgcc ccccaagtct tacctcatcc acgccggtct
     4261 ggagcccctg accttcacca acatgtttcc cagctgggag cacagagaag acattgcaga
     4321 aatcacagaa atggacacgg aagtttcaaa tcagatcacc ctggtggagg atgtcttagc
     4381 caagctgtgc aaaaccattt atccactggc cgacctccta gccaggcccc tgcccgaggg
     4441 agttgaccct ctgaagctgg agatttatct caccgacgag gacttcgagt ttgcactaga
     4501 catgacccga gacgaataca atgcactgcc tgcctggaag caggtgaacc tgaagaaagc
     4561 aaaaggtctg ttctgagtca tgagatgctg gaggaaacct ctgttgtcac tttcaatact
     4621 gttggaccag gaaaatggat gtgttttgtt tttggaagcg gggtatggct agtcctttaa
     4681 aaaatatttt acatctgcgt tttcgagacc tgaagcgatc agctctcctg cttgtttggg
     4741 agttgtgcat tttgtaaatg ttccagaaaa ctctctggaa acacaccttc cacgattgag
     4801 cagacgatgt ttataaggca tccgcagccc cacgcgcgct cacgcagggg gtcctcagcg
     4861 aaggccacgg cactgccctc ctggtcctgc taagcgctgc ctgttattac tttttaagcg
     4921 gttcccttta taaattgtta ttttgatagt ttgtggattc taaatatata tatatttata
     4981 taaacaccgt ataaatcaaa tatgtattta acaaagcaat acgtattcat tcacttttaa
     5041 gggttttttt cgtgtcaaaa taacattaaa aggtagttgc ttctgttgaa ttagttctgc
     5101 caccaacgcg taccttcacc cacgttcaga ggcgcctcct tcagcgttaa gtcggactcg
     5161 ttctgagtgc tgcttccggt gctaagttga acaaagaaac tatacttcca ggcacaggct
     5221 cttaagaatc tgtgcgaatc cacctttcta ccttaatatc gccccccgaa tgtatagtgc
     5281 cttgtgttat gtacagttta tatacagaag agtttgctct gcattttttg acgatggttt
     5341 ggaacatcat ctacaatttt acgctgaaat ggtagaaatt ttaaaaagaa tctcaatttc
     5401 taatacctgt tgtaaaaatt aaatgtgtca ttcggcgatg gaagactcca aaataaaagc
     5461 ttcagaataa acacgacta
//
LOCUS       XM_032618951            3576 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X1, mRNA.
ACCESSION   XM_032618951
VERSION     XM_032618951.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3576
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3576
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 11 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     CDS             375..3023
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X1"
                     /protein_id="XP_032474842.1"
                     /db_xref="GeneID:116747151"
                     /translation="MIAFTSFVSCLSKISLRHLRRIVVQVKDIIMQSASSVPPKDQGG
                     VSRLASPVEKQLTQKKSASPGKTARTGESNSPPGTIQGGKGLQGKSQFRTIAPKLAPR
                     VLAPRVVPGPAPSLSDHAHPGPSLGSKALGLPPQNYALMQVAGQEGTFSLVALPHVAS
                     AQPLQKPRLPLPKNLKLPIPRYQRPGHSKGARKKPGFSSSDRGCSQAPAQTQAAPPLP
                     EHPEAPHKPSPPKPALAPGQAPAPLTSGGGHGDPGLPGTSDRGGRDPPTAPALSTPEE
                     PSAERGLPKSSGRAGVAGKQPSRKPAVARGELREQVDPARAATHLSPGVIGNAVQVVP
                     SIPRGKLPILPYSRTRASQVYKGGAAVNVADVSLPGLRAASDKTSSIPEGFCSAPQVA
                     DRAPAPQASRQSPFDRAYCPATKADLNHKTKPNGGAAKRRGRKRKVPDELLTFQGKRR
                     KCVSNKCKDGKERAKADPQESRDQKPGAVKKYRSIMPKPVLVLPALAPLASPTATLQP
                     PAPGSREHASFNHSLAAPKHLGCRQDDGPSPKPGSAFRSGFSGLKKPSHGCHVCEHAF
                     QPKQHLRERANTHSDSRPYSCRLCRKAYVRPGSLSAHVRLHHGDSRPRRLVCCEFCAK
                     VFGHVRVYFGHLKEVHGVAVSTEPSPCEPQLQPGDLLRTREQTARGMEGPVDRETKSS
                     LEEDLLLNQADEVKFQIRCGRCQITAQSFAEIKFHLLYVHGEEIQGQLQEELSPSPGS
                     RGAQGELVQQAAPFWKHPERRKQLKHRPLDGELCAVPRLKKQLYLRHQNDVEILAKRE
                     GAQPGPSEPGGHPQGPEGLGPDAALSPPRPGFRCILCAQTLGRKEELLLHWEERHKCE
                     DPLKLWTVLSTLSSQGVIEPSSETGK"
     misc_feature    <564..1583
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2049..2111
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2049..2051,2058..2060,2097..2099,2109..2111)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2064..2066,2070..2072,2076..2078,2082..2087,
                     2094..2099,2106..2108,2148..2150,2154..2156,2166..2171,
                     2178..2183,2190..2192,2244..2246,2250..2252,2256..2258,
                     2262..2267,2274..2279)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2133..2195
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2229..2285
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gggggcgggc ggcggcgacc cgcggcctga cctgcccggg cgccgggtct cgtgacgtca
       61 cctcgccgtg acgcgcacgc ggtaggaaaa ctgattaaat taaaaggatt taccatacat
      121 cttatgactc tttactggag ccttgggagt tagatattgt tttctataag tggagcatag
      181 ttggatttca tagttggatt tttttaacct aatggcgagg aacctttgcc ttttaacaga
      241 taaagatgaa tgtcatgtct caaccaacgc tgaaaatgag aagtttagaa gacatttgct
      301 aagtcaagtc acctcatctc ttttcttcat tactctggga atttccacca gctttctccc
      361 ttcctgcact gtggatgata gcgttcacct catttgtttc ctgtctctca aagatcagtc
      421 ttcgtcacct aaggcgaatt gtcgttcaag tcaaagacat cataatgcag agtgcttcat
      481 cagtaccacc gaaagatcaa ggaggtgttt cccggctcgc cagtcctgtt gagaaacagc
      541 tgactcagaa gaagtccgca tctcctggaa agacagcgcg cacaggtgaa tcaaacagcc
      601 ctcctggaac gattcagggt gggaagggtc tgcagggtaa gagtcagttt agaaccatcg
      661 ctccaaaact tgcgccccga gtcctggcgc ccagagtggt cccgggtccg gcgccctccc
      721 tctctgacca cgcgcatcca ggcccctccc tcggctcgaa ggccctgggg ctgccccccc
      781 agaattacgc gctgatgcag gtggccggcc aggaagggac cttctctctc gtcgctctgc
      841 cacacgtcgc ctcggctcag ccactccaga aacccagact gcctctgccc aagaacctga
      901 agctgcccat cccccggtac caacgcccag gacatagcaa aggagccaga aagaaaccgg
      961 ggttcagctc ctccgacagg ggctgtagcc aagctcccgc ccaaacccaa gcggcccctc
     1021 ccctgcctga gcatcccgag gccccgcaca agcccagccc acccaagccg gcgctggcac
     1081 ccggccaggc cccggccccg ctgaccagtg ggggtggcca tggagaccct gggctcccag
     1141 ggaccagcga ccgcggaggt cgggaccctc ccactgcccc agcgctgtcc acgccggagg
     1201 agccctctgc cgagcggggc ctcccgaaga gttcagggag agcaggcgtt gcaggcaagc
     1261 agccctccag gaagcctgct gtcgccaggg gagaacttag agaacaggtc gaccctgcca
     1321 gggccgcgac ccatttgtcg ccaggcgtca ttggaaacgc ggttcaggtg gtcccttcca
     1381 tccccagagg taaactgccc atcctgccct actcaagaac gagggcgtcg caagtttaca
     1441 aaggcggagc cgctgtgaac gttgcagatg tttctctccc tgggctcagg gcagccagtg
     1501 ataagacctc gtccatcccg gagggcttct gttcggcccc gcaggtggcc gacagggcac
     1561 ctgccccaca ggcgtcgagg cagagcccct ttgacagggc ctactgtccg gccaccaaag
     1621 ccgacctcaa ccacaaaaca aaaccgaacg gcggggcagc caagagaaga ggaagaaaac
     1681 ggaaggtccc cgatgaactt ctgacatttc agggtaaaag gaggaaatgt gtcagtaata
     1741 agtgtaaaga tggcaaagaa agagccaaag ccgatcccca ggaatccagg gaccaaaaac
     1801 ctggggctgt gaaaaaatac cgtagcatca tgcccaaacc tgtcctggtc ctgccggccc
     1861 tggctcccct ggcctcgccc acggccacgt tacagccccc ggcgcccggc agccgggagc
     1921 acgcgtcgtt caatcactcc ctcgccgccc ccaagcatct gggctgcagg caggacgacg
     1981 gcccctcccc gaagcccggc tcggccttta gaagtgggtt ctccggcctc aagaagcctt
     2041 cgcacggatg ccacgtgtgc gagcacgcct tccagcccaa gcagcacctc cgcgagcgcg
     2101 ccaacacgca cagcgacagc cggccctaca gctgccggct ctgccgcaaa gcctacgtgc
     2161 ggccgggcag cctgagcgca cacgtgcggc tgcatcacgg cgactcccgg cccaggaggc
     2221 tcgtgtgctg cgaattctgc gcgaaggtgt tcggccacgt cagagtctac ttcggccacc
     2281 tgaaagaggt gcacggggtg gccgtcagca ccgagccctc cccctgcgag ccgcagctgc
     2341 agccggggga cttgctgagg accagggagc agactgcccg agggatggag ggaccggtgg
     2401 acagggagac caagtccagc ctggaagaag acctccttct aaaccaggct gatgaggtca
     2461 agttccagat cagatgtggc cgctgtcaga tcactgccca gtcttttgct gaaatcaagt
     2521 tccacctgct ttacgttcat ggagaggaaa tccagggcca gttgcaagag gagctctcac
     2581 cctccccagg aagcagggga gctcagggag aactggttca acaggctgct cctttctgga
     2641 aacatcctga gagaagaaag cagcttaagc accgtccctt ggacggggaa ctctgtgcag
     2701 tccccagact gaaaaagcaa ctctacctcc gtcatcagaa tgatgtggag atacttgcga
     2761 aacgtgaagg agcccagccg ggacccagtg agcccggagg acacccccag ggccccgagg
     2821 gtctcggccc cgacgctgcc ctctccccgc cccggcctgg ctttcgctgc atcctttgtg
     2881 cacagacgct gggaaggaag gaagagctgc tcctgcattg ggaagagcgc cacaagtgcg
     2941 aggaccctct gaaactctgg acggttctca gcacgctctc cagccagggg gtcatcgaac
     3001 cttccagcga gaccggaaaa tgagacaggg agccgggggg taaggggagg ttttctctcc
     3061 gcttcctctg ttccttggtg gtgcttaata ccaaaaatga agcaggttag gatcagcgtt
     3121 aatgagcaca gtgagttttg tacagtctta ttttattatg aaatatatat gtacggggct
     3181 tgcctggtgg cgcagtggtt gagagtccgc ctgccgatgc aggggacgcg ggttcgtgcc
     3241 ccggtctggg aagatcccac atgccgcgga gcggctgggc ccgtgagcca tggccgctga
     3301 gcctgtgcgt ccggagcctg tgctccgcaa cgggagaggc cacaacagtg agaggcccgc
     3361 gtaccgcaaa ataaatatat atatatatat acacagacac acacacacac acacacacac
     3421 acacacacac acacacacac acacacatat atatgtacat atgcccttga tgcctatttt
     3481 tctaacataa tgcagtttta ttttaaaatt ctatgttctg ttagtatctg agactttatt
     3541 tcagattcaa taaaaagata aatttgcaga ttgaaa
//
LOCUS       XM_032618958            3215 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X2, mRNA.
ACCESSION   XM_032618958
VERSION     XM_032618958.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3215
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3215
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 11 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     CDS             53..2662
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X2"
                     /protein_id="XP_032474849.1"
                     /db_xref="GeneID:116747151"
                     /translation="MESYKFWRIVVQVKDIIMQSASSVPPKDQGGVSRLASPVEKQLT
                     QKKSASPGKTARTGESNSPPGTIQGGKGLQGKSQFRTIAPKLAPRVLAPRVVPGPAPS
                     LSDHAHPGPSLGSKALGLPPQNYALMQVAGQEGTFSLVALPHVASAQPLQKPRLPLPK
                     NLKLPIPRYQRPGHSKGARKKPGFSSSDRGCSQAPAQTQAAPPLPEHPEAPHKPSPPK
                     PALAPGQAPAPLTSGGGHGDPGLPGTSDRGGRDPPTAPALSTPEEPSAERGLPKSSGR
                     AGVAGKQPSRKPAVARGELREQVDPARAATHLSPGVIGNAVQVVPSIPRGKLPILPYS
                     RTRASQVYKGGAAVNVADVSLPGLRAASDKTSSIPEGFCSAPQVADRAPAPQASRQSP
                     FDRAYCPATKADLNHKTKPNGGAAKRRGRKRKVPDELLTFQGKRRKCVSNKCKDGKER
                     AKADPQESRDQKPGAVKKYRSIMPKPVLVLPALAPLASPTATLQPPAPGSREHASFNH
                     SLAAPKHLGCRQDDGPSPKPGSAFRSGFSGLKKPSHGCHVCEHAFQPKQHLRERANTH
                     SDSRPYSCRLCRKAYVRPGSLSAHVRLHHGDSRPRRLVCCEFCAKVFGHVRVYFGHLK
                     EVHGVAVSTEPSPCEPQLQPGDLLRTREQTARGMEGPVDRETKSSLEEDLLLNQADEV
                     KFQIRCGRCQITAQSFAEIKFHLLYVHGEEIQGQLQEELSPSPGSRGAQGELVQQAAP
                     FWKHPERRKQLKHRPLDGELCAVPRLKKQLYLRHQNDVEILAKREGAQPGPSEPGGHP
                     QGPEGLGPDAALSPPRPGFRCILCAQTLGRKEELLLHWEERHKCEDPLKLWTVLSTLS
                     SQGVIEPSSETGK"
     misc_feature    <203..1222
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1688..1750
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1688..1690,1697..1699,1736..1738,1748..1750)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1703..1705,1709..1711,1715..1717,1721..1726,
                     1733..1738,1745..1747,1787..1789,1793..1795,1805..1810,
                     1817..1822,1829..1831,1883..1885,1889..1891,1895..1897,
                     1901..1906,1913..1918)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1772..1834
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1868..1924
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 ttctaatata gatgctttca gtgctctaaa ttaccccctg tgtactgctt taatggaatc
       61 atacaaattt tggcgaattg tcgttcaagt caaagacatc ataatgcaga gtgcttcatc
      121 agtaccaccg aaagatcaag gaggtgtttc ccggctcgcc agtcctgttg agaaacagct
      181 gactcagaag aagtccgcat ctcctggaaa gacagcgcgc acaggtgaat caaacagccc
      241 tcctggaacg attcagggtg ggaagggtct gcagggtaag agtcagttta gaaccatcgc
      301 tccaaaactt gcgccccgag tcctggcgcc cagagtggtc ccgggtccgg cgccctccct
      361 ctctgaccac gcgcatccag gcccctccct cggctcgaag gccctggggc tgccccccca
      421 gaattacgcg ctgatgcagg tggccggcca ggaagggacc ttctctctcg tcgctctgcc
      481 acacgtcgcc tcggctcagc cactccagaa acccagactg cctctgccca agaacctgaa
      541 gctgcccatc ccccggtacc aacgcccagg acatagcaaa ggagccagaa agaaaccggg
      601 gttcagctcc tccgacaggg gctgtagcca agctcccgcc caaacccaag cggcccctcc
      661 cctgcctgag catcccgagg ccccgcacaa gcccagccca cccaagccgg cgctggcacc
      721 cggccaggcc ccggccccgc tgaccagtgg gggtggccat ggagaccctg ggctcccagg
      781 gaccagcgac cgcggaggtc gggaccctcc cactgcccca gcgctgtcca cgccggagga
      841 gccctctgcc gagcggggcc tcccgaagag ttcagggaga gcaggcgttg caggcaagca
      901 gccctccagg aagcctgctg tcgccagggg agaacttaga gaacaggtcg accctgccag
      961 ggccgcgacc catttgtcgc caggcgtcat tggaaacgcg gttcaggtgg tcccttccat
     1021 ccccagaggt aaactgccca tcctgcccta ctcaagaacg agggcgtcgc aagtttacaa
     1081 aggcggagcc gctgtgaacg ttgcagatgt ttctctccct gggctcaggg cagccagtga
     1141 taagacctcg tccatcccgg agggcttctg ttcggccccg caggtggccg acagggcacc
     1201 tgccccacag gcgtcgaggc agagcccctt tgacagggcc tactgtccgg ccaccaaagc
     1261 cgacctcaac cacaaaacaa aaccgaacgg cggggcagcc aagagaagag gaagaaaacg
     1321 gaaggtcccc gatgaacttc tgacatttca gggtaaaagg aggaaatgtg tcagtaataa
     1381 gtgtaaagat ggcaaagaaa gagccaaagc cgatccccag gaatccaggg accaaaaacc
     1441 tggggctgtg aaaaaatacc gtagcatcat gcccaaacct gtcctggtcc tgccggccct
     1501 ggctcccctg gcctcgccca cggccacgtt acagcccccg gcgcccggca gccgggagca
     1561 cgcgtcgttc aatcactccc tcgccgcccc caagcatctg ggctgcaggc aggacgacgg
     1621 cccctccccg aagcccggct cggcctttag aagtgggttc tccggcctca agaagccttc
     1681 gcacggatgc cacgtgtgcg agcacgcctt ccagcccaag cagcacctcc gcgagcgcgc
     1741 caacacgcac agcgacagcc ggccctacag ctgccggctc tgccgcaaag cctacgtgcg
     1801 gccgggcagc ctgagcgcac acgtgcggct gcatcacggc gactcccggc ccaggaggct
     1861 cgtgtgctgc gaattctgcg cgaaggtgtt cggccacgtc agagtctact tcggccacct
     1921 gaaagaggtg cacggggtgg ccgtcagcac cgagccctcc ccctgcgagc cgcagctgca
     1981 gccgggggac ttgctgagga ccagggagca gactgcccga gggatggagg gaccggtgga
     2041 cagggagacc aagtccagcc tggaagaaga cctccttcta aaccaggctg atgaggtcaa
     2101 gttccagatc agatgtggcc gctgtcagat cactgcccag tcttttgctg aaatcaagtt
     2161 ccacctgctt tacgttcatg gagaggaaat ccagggccag ttgcaagagg agctctcacc
     2221 ctccccagga agcaggggag ctcagggaga actggttcaa caggctgctc ctttctggaa
     2281 acatcctgag agaagaaagc agcttaagca ccgtcccttg gacggggaac tctgtgcagt
     2341 ccccagactg aaaaagcaac tctacctccg tcatcagaat gatgtggaga tacttgcgaa
     2401 acgtgaagga gcccagccgg gacccagtga gcccggagga cacccccagg gccccgaggg
     2461 tctcggcccc gacgctgccc tctccccgcc ccggcctggc tttcgctgca tcctttgtgc
     2521 acagacgctg ggaaggaagg aagagctgct cctgcattgg gaagagcgcc acaagtgcga
     2581 ggaccctctg aaactctgga cggttctcag cacgctctcc agccaggggg tcatcgaacc
     2641 ttccagcgag accggaaaat gagacaggga gccggggggt aaggggaggt tttctctccg
     2701 cttcctctgt tccttggtgg tgcttaatac caaaaatgaa gcaggttagg atcagcgtta
     2761 atgagcacag tgagttttgt acagtcttat tttattatga aatatatatg tacggggctt
     2821 gcctggtggc gcagtggttg agagtccgcc tgccgatgca ggggacgcgg gttcgtgccc
     2881 cggtctggga agatcccaca tgccgcggag cggctgggcc cgtgagccat ggccgctgag
     2941 cctgtgcgtc cggagcctgt gctccgcaac gggagaggcc acaacagtga gaggcccgcg
     3001 taccgcaaaa taaatatata tatatatata cacagacaca cacacacaca cacacacaca
     3061 cacacacaca cacacacaca cacacatata tatgtacata tgcccttgat gcctattttt
     3121 ctaacataat gcagttttat tttaaaattc tatgttctgt tagtatctga gactttattt
     3181 cagattcaat aaaaagataa atttgcagat tgaaa
//
LOCUS       XM_032618962            4952 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X3, mRNA.
ACCESSION   XM_032618962
VERSION     XM_032618962.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4952
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4952
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 11 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     CDS             1808..4399
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X3"
                     /protein_id="XP_032474853.1"
                     /db_xref="GeneID:116747151"
                     /translation="MRIVVQVKDIIMQSASSVPPKDQGGVSRLASPVEKQLTQKKSAS
                     PGKTARTGESNSPPGTIQGGKGLQGKSQFRTIAPKLAPRVLAPRVVPGPAPSLSDHAH
                     PGPSLGSKALGLPPQNYALMQVAGQEGTFSLVALPHVASAQPLQKPRLPLPKNLKLPI
                     PRYQRPGHSKGARKKPGFSSSDRGCSQAPAQTQAAPPLPEHPEAPHKPSPPKPALAPG
                     QAPAPLTSGGGHGDPGLPGTSDRGGRDPPTAPALSTPEEPSAERGLPKSSGRAGVAGK
                     QPSRKPAVARGELREQVDPARAATHLSPGVIGNAVQVVPSIPRGKLPILPYSRTRASQ
                     VYKGGAAVNVADVSLPGLRAASDKTSSIPEGFCSAPQVADRAPAPQASRQSPFDRAYC
                     PATKADLNHKTKPNGGAAKRRGRKRKVPDELLTFQGKRRKCVSNKCKDGKERAKADPQ
                     ESRDQKPGAVKKYRSIMPKPVLVLPALAPLASPTATLQPPAPGSREHASFNHSLAAPK
                     HLGCRQDDGPSPKPGSAFRSGFSGLKKPSHGCHVCEHAFQPKQHLRERANTHSDSRPY
                     SCRLCRKAYVRPGSLSAHVRLHHGDSRPRRLVCCEFCAKVFGHVRVYFGHLKEVHGVA
                     VSTEPSPCEPQLQPGDLLRTREQTARGMEGPVDRETKSSLEEDLLLNQADEVKFQIRC
                     GRCQITAQSFAEIKFHLLYVHGEEIQGQLQEELSPSPGSRGAQGELVQQAAPFWKHPE
                     RRKQLKHRPLDGELCAVPRLKKQLYLRHQNDVEILAKREGAQPGPSEPGGHPQGPEGL
                     GPDAALSPPRPGFRCILCAQTLGRKEELLLHWEERHKCEDPLKLWTVLSTLSSQGVIE
                     PSSETGK"
     misc_feature    <1940..2959
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3425..3487
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3425..3427,3434..3436,3473..3475,3485..3487)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3440..3442,3446..3448,3452..3454,3458..3463,
                     3470..3475,3482..3484,3524..3526,3530..3532,3542..3547,
                     3554..3559,3566..3568,3620..3622,3626..3628,3632..3634,
                     3638..3643,3650..3655)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3509..3571
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3605..3661
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtgttgagag tggggaggtg ggagagtctt gctgccccct ggggagagac ggtgggcgcc
       61 tgcactaggg aggtactggc gaggtgatgg tacgtgggca aagtcgtgga aagcttctga
      121 agccaggagt gctggtgtgg acttactagt tggagggtgg ggaaaaggaa gaagtgatga
      181 cttctcaggt tttaggctgg aacagctgga tggatagtgg cgctgtttcc cgagacgaga
      241 gaaaggggtt tgggaagaaa accgtgcatt ctgttttgga cgagttttag gcgcctgaca
      301 gacatagtaa cagcagtact ggcactagga ataacaggaa gcaccgtgta agcgtgaact
      361 gtgtgcccga tggggtttta agcatgttta cacatgttaa ttcatttaat ccttatatca
      421 cagctgtgtg tgccaggagc cctcggggtc cccactttac gcgggagaag acagaggcac
      481 agagaggttc aaagtgaccc gcctgctggc acccagctgg gcagtgatgg agctgggatt
      541 caaaccccaa gccgtctaac ttccaagccc atgcggttta tccctgtaac gccctgcaag
      601 tcgacacgtt gagtaggccc ttggatgtat gaatgtggaa ctcaggggaa tggtcggggc
      661 tgaagacaca cgtttgtgtt tcttaagaga aagccctctt tggttcctca ttaagccttg
      721 attggcaagg ggggaaagga gcacaggcag ttggcgctgt gctaactggc ctttcattac
      781 ttgattccgt tcaggcagcc aacatccacc cgggctgagg tccgtatctc ttctacttgt
      841 ctgtgtctgg tcccgagtct ggcgcttgcc atggagtaga tgttaggtat gactttatat
      901 gcaggacatg gctgaggttt ggggagttca gaggtgaata aaacatagct ctctttctgg
      961 aggaaggacc cgtggggata aaactagagt gggcggagcg cacgctaatg agctcacgct
     1021 ggccttcttg ccgcccctgc tctgccccgc acgcttgagg ggtggggcgg ggcggggggc
     1081 cagaggagca aaagaaggcc tgcgcggccg cagcatggat tcgaggttcc ccaagagtcc
     1141 ttttcaagaa aagaatgact cagagccttg cctagtttac tatatttgca ttagttttat
     1201 ttggcaaccg tataattttt cccaagtgaa atacagtttg atatttgaat atcgtggtgg
     1261 agtgatgagt ttttccagtt ctgttacatc agtgttgaca gggccagctg gtgaaataag
     1321 ggagttgcct taaaatgttg cagcttgcat aatagagggc gatggagggg ttgtgtgaag
     1381 tgtttaggca ggtttccgcc tggttaagtg aatcaggcta aagttccaca catcggaatg
     1441 agtttgagtt tctctgtgga tcatcccgct aacactgagc tgtatttctt gtcagagaaa
     1501 gaggatctgg tgatatttgt catgagtgga actgtgtgga acaatgtgga aacacaggaa
     1561 cttgaaccat acatacaaaa ctaggattaa attaaaagga tttaccatac atcttatgac
     1621 tctttactgg agccttggga gttagatatt gttttctata agtggagcat agttggattt
     1681 catagttgga tttttttaac ctaatggcga ggaacctttg ccttttaaca gataaagatg
     1741 aatgtcatgt ctcaaccaac gctgaaaatg agaagtttag aagacatttg ctaagtcaag
     1801 tcacctcatg cgaattgtcg ttcaagtcaa agacatcata atgcagagtg cttcatcagt
     1861 accaccgaaa gatcaaggag gtgtttcccg gctcgccagt cctgttgaga aacagctgac
     1921 tcagaagaag tccgcatctc ctggaaagac agcgcgcaca ggtgaatcaa acagccctcc
     1981 tggaacgatt cagggtggga agggtctgca gggtaagagt cagtttagaa ccatcgctcc
     2041 aaaacttgcg ccccgagtcc tggcgcccag agtggtcccg ggtccggcgc cctccctctc
     2101 tgaccacgcg catccaggcc cctccctcgg ctcgaaggcc ctggggctgc ccccccagaa
     2161 ttacgcgctg atgcaggtgg ccggccagga agggaccttc tctctcgtcg ctctgccaca
     2221 cgtcgcctcg gctcagccac tccagaaacc cagactgcct ctgcccaaga acctgaagct
     2281 gcccatcccc cggtaccaac gcccaggaca tagcaaagga gccagaaaga aaccggggtt
     2341 cagctcctcc gacaggggct gtagccaagc tcccgcccaa acccaagcgg cccctcccct
     2401 gcctgagcat cccgaggccc cgcacaagcc cagcccaccc aagccggcgc tggcacccgg
     2461 ccaggccccg gccccgctga ccagtggggg tggccatgga gaccctgggc tcccagggac
     2521 cagcgaccgc ggaggtcggg accctcccac tgccccagcg ctgtccacgc cggaggagcc
     2581 ctctgccgag cggggcctcc cgaagagttc agggagagca ggcgttgcag gcaagcagcc
     2641 ctccaggaag cctgctgtcg ccaggggaga acttagagaa caggtcgacc ctgccagggc
     2701 cgcgacccat ttgtcgccag gcgtcattgg aaacgcggtt caggtggtcc cttccatccc
     2761 cagaggtaaa ctgcccatcc tgccctactc aagaacgagg gcgtcgcaag tttacaaagg
     2821 cggagccgct gtgaacgttg cagatgtttc tctccctggg ctcagggcag ccagtgataa
     2881 gacctcgtcc atcccggagg gcttctgttc ggccccgcag gtggccgaca gggcacctgc
     2941 cccacaggcg tcgaggcaga gcccctttga cagggcctac tgtccggcca ccaaagccga
     3001 cctcaaccac aaaacaaaac cgaacggcgg ggcagccaag agaagaggaa gaaaacggaa
     3061 ggtccccgat gaacttctga catttcaggg taaaaggagg aaatgtgtca gtaataagtg
     3121 taaagatggc aaagaaagag ccaaagccga tccccaggaa tccagggacc aaaaacctgg
     3181 ggctgtgaaa aaataccgta gcatcatgcc caaacctgtc ctggtcctgc cggccctggc
     3241 tcccctggcc tcgcccacgg ccacgttaca gcccccggcg cccggcagcc gggagcacgc
     3301 gtcgttcaat cactccctcg ccgcccccaa gcatctgggc tgcaggcagg acgacggccc
     3361 ctccccgaag cccggctcgg cctttagaag tgggttctcc ggcctcaaga agccttcgca
     3421 cggatgccac gtgtgcgagc acgccttcca gcccaagcag cacctccgcg agcgcgccaa
     3481 cacgcacagc gacagccggc cctacagctg ccggctctgc cgcaaagcct acgtgcggcc
     3541 gggcagcctg agcgcacacg tgcggctgca tcacggcgac tcccggccca ggaggctcgt
     3601 gtgctgcgaa ttctgcgcga aggtgttcgg ccacgtcaga gtctacttcg gccacctgaa
     3661 agaggtgcac ggggtggccg tcagcaccga gccctccccc tgcgagccgc agctgcagcc
     3721 gggggacttg ctgaggacca gggagcagac tgcccgaggg atggagggac cggtggacag
     3781 ggagaccaag tccagcctgg aagaagacct ccttctaaac caggctgatg aggtcaagtt
     3841 ccagatcaga tgtggccgct gtcagatcac tgcccagtct tttgctgaaa tcaagttcca
     3901 cctgctttac gttcatggag aggaaatcca gggccagttg caagaggagc tctcaccctc
     3961 cccaggaagc aggggagctc agggagaact ggttcaacag gctgctcctt tctggaaaca
     4021 tcctgagaga agaaagcagc ttaagcaccg tcccttggac ggggaactct gtgcagtccc
     4081 cagactgaaa aagcaactct acctccgtca tcagaatgat gtggagatac ttgcgaaacg
     4141 tgaaggagcc cagccgggac ccagtgagcc cggaggacac ccccagggcc ccgagggtct
     4201 cggccccgac gctgccctct ccccgccccg gcctggcttt cgctgcatcc tttgtgcaca
     4261 gacgctggga aggaaggaag agctgctcct gcattgggaa gagcgccaca agtgcgagga
     4321 ccctctgaaa ctctggacgg ttctcagcac gctctccagc cagggggtca tcgaaccttc
     4381 cagcgagacc ggaaaatgag acagggagcc ggggggtaag gggaggtttt ctctccgctt
     4441 cctctgttcc ttggtggtgc ttaataccaa aaatgaagca ggttaggatc agcgttaatg
     4501 agcacagtga gttttgtaca gtcttatttt attatgaaat atatatgtac ggggcttgcc
     4561 tggtggcgca gtggttgaga gtccgcctgc cgatgcaggg gacgcgggtt cgtgccccgg
     4621 tctgggaaga tcccacatgc cgcggagcgg ctgggcccgt gagccatggc cgctgagcct
     4681 gtgcgtccgg agcctgtgct ccgcaacggg agaggccaca acagtgagag gcccgcgtac
     4741 cgcaaaataa atatatatat atatatacac agacacacac acacacacac acacacacac
     4801 acacacacac acacacacac acatatatat gtacatatgc ccttgatgcc tatttttcta
     4861 acataatgca gttttatttt aaaattctat gttctgttag tatctgagac tttatttcag
     4921 attcaataaa aagataaatt tgcagattga aa
//
LOCUS       XM_032618967            5196 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X4, mRNA.
ACCESSION   XM_032618967
VERSION     XM_032618967.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5196
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5196
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 11 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     CDS             2052..4643
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X3"
                     /protein_id="XP_032474858.1"
                     /db_xref="GeneID:116747151"
                     /translation="MRIVVQVKDIIMQSASSVPPKDQGGVSRLASPVEKQLTQKKSAS
                     PGKTARTGESNSPPGTIQGGKGLQGKSQFRTIAPKLAPRVLAPRVVPGPAPSLSDHAH
                     PGPSLGSKALGLPPQNYALMQVAGQEGTFSLVALPHVASAQPLQKPRLPLPKNLKLPI
                     PRYQRPGHSKGARKKPGFSSSDRGCSQAPAQTQAAPPLPEHPEAPHKPSPPKPALAPG
                     QAPAPLTSGGGHGDPGLPGTSDRGGRDPPTAPALSTPEEPSAERGLPKSSGRAGVAGK
                     QPSRKPAVARGELREQVDPARAATHLSPGVIGNAVQVVPSIPRGKLPILPYSRTRASQ
                     VYKGGAAVNVADVSLPGLRAASDKTSSIPEGFCSAPQVADRAPAPQASRQSPFDRAYC
                     PATKADLNHKTKPNGGAAKRRGRKRKVPDELLTFQGKRRKCVSNKCKDGKERAKADPQ
                     ESRDQKPGAVKKYRSIMPKPVLVLPALAPLASPTATLQPPAPGSREHASFNHSLAAPK
                     HLGCRQDDGPSPKPGSAFRSGFSGLKKPSHGCHVCEHAFQPKQHLRERANTHSDSRPY
                     SCRLCRKAYVRPGSLSAHVRLHHGDSRPRRLVCCEFCAKVFGHVRVYFGHLKEVHGVA
                     VSTEPSPCEPQLQPGDLLRTREQTARGMEGPVDRETKSSLEEDLLLNQADEVKFQIRC
                     GRCQITAQSFAEIKFHLLYVHGEEIQGQLQEELSPSPGSRGAQGELVQQAAPFWKHPE
                     RRKQLKHRPLDGELCAVPRLKKQLYLRHQNDVEILAKREGAQPGPSEPGGHPQGPEGL
                     GPDAALSPPRPGFRCILCAQTLGRKEELLLHWEERHKCEDPLKLWTVLSTLSSQGVIE
                     PSSETGK"
     misc_feature    <2184..3203
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3669..3731
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3669..3671,3678..3680,3717..3719,3729..3731)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3684..3686,3690..3692,3696..3698,3702..3707,
                     3714..3719,3726..3728,3768..3770,3774..3776,3786..3791,
                     3798..3803,3810..3812,3864..3866,3870..3872,3876..3878,
                     3882..3887,3894..3899)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3753..3815
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3849..3905
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtgttgagag tggggaggtg ggagagtctt gctgccccct ggggagagac ggtgggcgcc
       61 tgcactaggg aggtactggc gaggtgatgg tacgtgggca aagtcgtgga aagcttctga
      121 agccaggagt gctggtgtgg acttactagt tggagggtgg ggaaaaggaa gaagtgatga
      181 cttctcaggt tttaggctgg aacagctgga tggatagtgg cgctgtttcc cgagacgaga
      241 gaaaggggtt tgggaagaaa accgtgcatt ctgttttgga cgagttttag gcgcctgaca
      301 gacatagtaa cagcagtact ggcactagga ataacaggaa gcaccgtgta agcgtgaact
      361 gtgtgcccga tggggtttta agcatgttta cacatgttaa ttcatttaat ccttatatca
      421 cagctgtgtg tgccaggagc cctcggggtc cccactttac gcgggagaag acagaggcac
      481 agagaggttc aaagtgaccc gcctgctggc acccagctgg gcagtgatgg agctgggatt
      541 caaaccccaa gccgtctaac ttccaagccc atgcggttta tccctgtaac gccctgcaag
      601 tcgacacgtt gagtaggccc ttggatgtat gaatgtggaa ctcaggggaa tggtcggggc
      661 tgaagacaca cgtttgtgtt tcttaagaga aagccctctt tggttcctca ttaagccttg
      721 attggcaagg ggggaaagga gcacaggcag ttggcgctgt gctaactggc ctttcattac
      781 ttgattccgt tcaggcagcc aacatccacc cgggctgagg tccgtatctc ttctacttgt
      841 ctgtgtctgg tcccgagtct ggcgcttgcc atggagtaga tgttaggtat gactttatat
      901 gcaggacatg gctgaggttt ggggagttca gaggtgaata aaacatagct ctctttctgg
      961 aggaaggacc cgtggggata aaactagagt gggcggagcg cacgctaatg agctcacgct
     1021 ggccttcttg ccgcccctgc tctgccccgc acgcttgagg ggtggggcgg ggcggggggc
     1081 cagaggagca aaagaaggcc tgcgcggccg cagcatggat tcgaggttcc ccaagagtcc
     1141 ttttcaagaa aagaatgact cagagccttg cctagtttac tatatttgca ttagttttat
     1201 ttggcaaccg tataattttt cccaagtgaa atacagtttg atatttgaat atcgtggtgg
     1261 agtgatgagt ttttccagtt ctgttacatc agtgttgaca gggccagctg gtgaaataag
     1321 ggagttgcct taaaatgttg cagcttgcat aatagagggc gatggagggg ttgtgtgaag
     1381 tgtttaggca ggtttccgcc tggttaagtg aatcaggcta aagttccaca catcggaatg
     1441 agtttgagtt tctctgtgga tcatcccgct aacactgagc tgtatttctt gtcagagaaa
     1501 gaggatctgg tgatatttgt catgagtgga actgtgtgga acaatgtgga aacacaggaa
     1561 cttgaaccat acatacaaaa ctaggattaa attaaaagga tttaccatac atcttatgac
     1621 tctttactgg agccttggga gttagatatt gttttctata agtggagcat agttggattt
     1681 catagttgga tttttttaac ctaatggcga ggaacctttg ccttttaaca gggccatcat
     1741 aaagcactca atggtaatgt taattagtgg acagatactt acagatactt agagaatgcc
     1801 gacataaaca gcatcgtgcc tggtactgtg tgttctccaa agatgtgtgc gactttggtc
     1861 ctaccaccgg gagtccagac ttctcaacaa acaggatctg tacactgctt tgaacgatca
     1921 gttgaccaag cgtaacagaa gttacctgtg gtgggaagag tagcgtggat tggagataaa
     1981 gatgaatgtc atgtctcaac caacgctgaa aatgagaagt ttagaagaca tttgctaagt
     2041 caagtcacct catgcgaatt gtcgttcaag tcaaagacat cataatgcag agtgcttcat
     2101 cagtaccacc gaaagatcaa ggaggtgttt cccggctcgc cagtcctgtt gagaaacagc
     2161 tgactcagaa gaagtccgca tctcctggaa agacagcgcg cacaggtgaa tcaaacagcc
     2221 ctcctggaac gattcagggt gggaagggtc tgcagggtaa gagtcagttt agaaccatcg
     2281 ctccaaaact tgcgccccga gtcctggcgc ccagagtggt cccgggtccg gcgccctccc
     2341 tctctgacca cgcgcatcca ggcccctccc tcggctcgaa ggccctgggg ctgccccccc
     2401 agaattacgc gctgatgcag gtggccggcc aggaagggac cttctctctc gtcgctctgc
     2461 cacacgtcgc ctcggctcag ccactccaga aacccagact gcctctgccc aagaacctga
     2521 agctgcccat cccccggtac caacgcccag gacatagcaa aggagccaga aagaaaccgg
     2581 ggttcagctc ctccgacagg ggctgtagcc aagctcccgc ccaaacccaa gcggcccctc
     2641 ccctgcctga gcatcccgag gccccgcaca agcccagccc acccaagccg gcgctggcac
     2701 ccggccaggc cccggccccg ctgaccagtg ggggtggcca tggagaccct gggctcccag
     2761 ggaccagcga ccgcggaggt cgggaccctc ccactgcccc agcgctgtcc acgccggagg
     2821 agccctctgc cgagcggggc ctcccgaaga gttcagggag agcaggcgtt gcaggcaagc
     2881 agccctccag gaagcctgct gtcgccaggg gagaacttag agaacaggtc gaccctgcca
     2941 gggccgcgac ccatttgtcg ccaggcgtca ttggaaacgc ggttcaggtg gtcccttcca
     3001 tccccagagg taaactgccc atcctgccct actcaagaac gagggcgtcg caagtttaca
     3061 aaggcggagc cgctgtgaac gttgcagatg tttctctccc tgggctcagg gcagccagtg
     3121 ataagacctc gtccatcccg gagggcttct gttcggcccc gcaggtggcc gacagggcac
     3181 ctgccccaca ggcgtcgagg cagagcccct ttgacagggc ctactgtccg gccaccaaag
     3241 ccgacctcaa ccacaaaaca aaaccgaacg gcggggcagc caagagaaga ggaagaaaac
     3301 ggaaggtccc cgatgaactt ctgacatttc agggtaaaag gaggaaatgt gtcagtaata
     3361 agtgtaaaga tggcaaagaa agagccaaag ccgatcccca ggaatccagg gaccaaaaac
     3421 ctggggctgt gaaaaaatac cgtagcatca tgcccaaacc tgtcctggtc ctgccggccc
     3481 tggctcccct ggcctcgccc acggccacgt tacagccccc ggcgcccggc agccgggagc
     3541 acgcgtcgtt caatcactcc ctcgccgccc ccaagcatct gggctgcagg caggacgacg
     3601 gcccctcccc gaagcccggc tcggccttta gaagtgggtt ctccggcctc aagaagcctt
     3661 cgcacggatg ccacgtgtgc gagcacgcct tccagcccaa gcagcacctc cgcgagcgcg
     3721 ccaacacgca cagcgacagc cggccctaca gctgccggct ctgccgcaaa gcctacgtgc
     3781 ggccgggcag cctgagcgca cacgtgcggc tgcatcacgg cgactcccgg cccaggaggc
     3841 tcgtgtgctg cgaattctgc gcgaaggtgt tcggccacgt cagagtctac ttcggccacc
     3901 tgaaagaggt gcacggggtg gccgtcagca ccgagccctc cccctgcgag ccgcagctgc
     3961 agccggggga cttgctgagg accagggagc agactgcccg agggatggag ggaccggtgg
     4021 acagggagac caagtccagc ctggaagaag acctccttct aaaccaggct gatgaggtca
     4081 agttccagat cagatgtggc cgctgtcaga tcactgccca gtcttttgct gaaatcaagt
     4141 tccacctgct ttacgttcat ggagaggaaa tccagggcca gttgcaagag gagctctcac
     4201 cctccccagg aagcagggga gctcagggag aactggttca acaggctgct cctttctgga
     4261 aacatcctga gagaagaaag cagcttaagc accgtccctt ggacggggaa ctctgtgcag
     4321 tccccagact gaaaaagcaa ctctacctcc gtcatcagaa tgatgtggag atacttgcga
     4381 aacgtgaagg agcccagccg ggacccagtg agcccggagg acacccccag ggccccgagg
     4441 gtctcggccc cgacgctgcc ctctccccgc cccggcctgg ctttcgctgc atcctttgtg
     4501 cacagacgct gggaaggaag gaagagctgc tcctgcattg ggaagagcgc cacaagtgcg
     4561 aggaccctct gaaactctgg acggttctca gcacgctctc cagccagggg gtcatcgaac
     4621 cttccagcga gaccggaaaa tgagacaggg agccgggggg taaggggagg ttttctctcc
     4681 gcttcctctg ttccttggtg gtgcttaata ccaaaaatga agcaggttag gatcagcgtt
     4741 aatgagcaca gtgagttttg tacagtctta ttttattatg aaatatatat gtacggggct
     4801 tgcctggtgg cgcagtggtt gagagtccgc ctgccgatgc aggggacgcg ggttcgtgcc
     4861 ccggtctggg aagatcccac atgccgcgga gcggctgggc ccgtgagcca tggccgctga
     4921 gcctgtgcgt ccggagcctg tgctccgcaa cgggagaggc cacaacagtg agaggcccgc
     4981 gtaccgcaaa ataaatatat atatatatat acacagacac acacacacac acacacacac
     5041 acacacacac acacacacac acacacatat atatgtacat atgcccttga tgcctatttt
     5101 tctaacataa tgcagtttta ttttaaaatt ctatgttctg ttagtatctg agactttatt
     5161 tcagattcaa taaaaagata aatttgcaga ttgaaa
//
LOCUS       XM_032618972            4866 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X5, mRNA.
ACCESSION   XM_032618972
VERSION     XM_032618972.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4866
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4866
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 11 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     CDS             1722..4313
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X3"
                     /protein_id="XP_032474863.1"
                     /db_xref="GeneID:116747151"
                     /translation="MRIVVQVKDIIMQSASSVPPKDQGGVSRLASPVEKQLTQKKSAS
                     PGKTARTGESNSPPGTIQGGKGLQGKSQFRTIAPKLAPRVLAPRVVPGPAPSLSDHAH
                     PGPSLGSKALGLPPQNYALMQVAGQEGTFSLVALPHVASAQPLQKPRLPLPKNLKLPI
                     PRYQRPGHSKGARKKPGFSSSDRGCSQAPAQTQAAPPLPEHPEAPHKPSPPKPALAPG
                     QAPAPLTSGGGHGDPGLPGTSDRGGRDPPTAPALSTPEEPSAERGLPKSSGRAGVAGK
                     QPSRKPAVARGELREQVDPARAATHLSPGVIGNAVQVVPSIPRGKLPILPYSRTRASQ
                     VYKGGAAVNVADVSLPGLRAASDKTSSIPEGFCSAPQVADRAPAPQASRQSPFDRAYC
                     PATKADLNHKTKPNGGAAKRRGRKRKVPDELLTFQGKRRKCVSNKCKDGKERAKADPQ
                     ESRDQKPGAVKKYRSIMPKPVLVLPALAPLASPTATLQPPAPGSREHASFNHSLAAPK
                     HLGCRQDDGPSPKPGSAFRSGFSGLKKPSHGCHVCEHAFQPKQHLRERANTHSDSRPY
                     SCRLCRKAYVRPGSLSAHVRLHHGDSRPRRLVCCEFCAKVFGHVRVYFGHLKEVHGVA
                     VSTEPSPCEPQLQPGDLLRTREQTARGMEGPVDRETKSSLEEDLLLNQADEVKFQIRC
                     GRCQITAQSFAEIKFHLLYVHGEEIQGQLQEELSPSPGSRGAQGELVQQAAPFWKHPE
                     RRKQLKHRPLDGELCAVPRLKKQLYLRHQNDVEILAKREGAQPGPSEPGGHPQGPEGL
                     GPDAALSPPRPGFRCILCAQTLGRKEELLLHWEERHKCEDPLKLWTVLSTLSSQGVIE
                     PSSETGK"
     misc_feature    <1854..2873
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3339..3401
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3339..3341,3348..3350,3387..3389,3399..3401)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3354..3356,3360..3362,3366..3368,3372..3377,
                     3384..3389,3396..3398,3438..3440,3444..3446,3456..3461,
                     3468..3473,3480..3482,3534..3536,3540..3542,3546..3548,
                     3552..3557,3564..3569)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3423..3485
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3519..3575
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtgttgagag tggggaggtg ggagagtctt gctgccccct ggggagagac ggtgggcgcc
       61 tgcactaggg aggtactggc gaggtgatgg tacgtgggca aagtcgtgga aagcttctga
      121 agccaggagt gctggtgtgg acttactagt tggagggtgg ggaaaaggaa gaagtgatga
      181 cttctcaggt tttaggctgg aacagctgga tggatagtgg cgctgtttcc cgagacgaga
      241 gaaaggggtt tgggaagaaa accgtgcatt ctgttttgga cgagttttag gcgcctgaca
      301 gacatagtaa cagcagtact ggcactagga ataacaggaa gcaccgtgta agcgtgaact
      361 gtgtgcccga tggggtttta agcatgttta cacatgttaa ttcatttaat ccttatatca
      421 cagctgtgtg tgccaggagc cctcggggtc cccactttac gcgggagaag acagaggcac
      481 agagaggttc aaagtgaccc gcctgctggc acccagctgg gcagtgatgg agctgggatt
      541 caaaccccaa gccgtctaac ttccaagccc atgcggttta tccctgtaac gccctgcaag
      601 tcgacacgtt gagtaggccc ttggatgtat gaatgtggaa ctcaggggaa tggtcggggc
      661 tgaagacaca cgtttgtgtt tcttaagaga aagccctctt tggttcctca ttaagccttg
      721 attggcaagg ggggaaagga gcacaggcag ttggcgctgt gctaactggc ctttcattac
      781 ttgattccgt tcaggcagcc aacatccacc cgggctgagg tccgtatctc ttctacttgt
      841 ctgtgtctgg tcccgagtct ggcgcttgcc atggagtaga tgttaggtat gactttatat
      901 gcaggacatg gctgaggttt ggggagttca gaggtgaata aaacatagct ctctttctgg
      961 aggaaggacc cgtggggata aaactagagt gggcggagcg cacgctaatg agctcacgct
     1021 ggccttcttg ccgcccctgc tctgccccgc acgcttgagg ggtggggcgg ggcggggggc
     1081 cagaggagca aaagaaggcc tgcgcggccg cagcatggat tcgaggttcc ccaagagtcc
     1141 ttttcaagaa aagaatgact cagagccttg cctagtttac tatatttgca ttagttttat
     1201 ttggcaaccg tataattttt cccaagtgaa atacagtttg atatttgaat atcgtggtgg
     1261 agtgatgagt ttttccagtt ctgttacatc agtgttgaca gggccagctg gtgaaataag
     1321 ggagttgcct taaaatgttg cagcttgcat aatagagggc gatggagggg ttgtgtgaag
     1381 tgtttaggca ggtttccgcc tggttaagtg aatcaggcta aagttccaca catcggaatg
     1441 agtttgagtt tctctgtgga tcatcccgct aacactgagc tgtatttctt gtcagagaaa
     1501 gaggatctgg tgatatttgt catgagtgga actgtgtgga acaatgtgga aacacaggaa
     1561 cttgaaccat acatacaaaa ctaggattaa attaaaagga tttaccatac atcttatgac
     1621 tctttactgg agccttggga gttagataaa gatgaatgtc atgtctcaac caacgctgaa
     1681 aatgagaagt ttagaagaca tttgctaagt caagtcacct catgcgaatt gtcgttcaag
     1741 tcaaagacat cataatgcag agtgcttcat cagtaccacc gaaagatcaa ggaggtgttt
     1801 cccggctcgc cagtcctgtt gagaaacagc tgactcagaa gaagtccgca tctcctggaa
     1861 agacagcgcg cacaggtgaa tcaaacagcc ctcctggaac gattcagggt gggaagggtc
     1921 tgcagggtaa gagtcagttt agaaccatcg ctccaaaact tgcgccccga gtcctggcgc
     1981 ccagagtggt cccgggtccg gcgccctccc tctctgacca cgcgcatcca ggcccctccc
     2041 tcggctcgaa ggccctgggg ctgccccccc agaattacgc gctgatgcag gtggccggcc
     2101 aggaagggac cttctctctc gtcgctctgc cacacgtcgc ctcggctcag ccactccaga
     2161 aacccagact gcctctgccc aagaacctga agctgcccat cccccggtac caacgcccag
     2221 gacatagcaa aggagccaga aagaaaccgg ggttcagctc ctccgacagg ggctgtagcc
     2281 aagctcccgc ccaaacccaa gcggcccctc ccctgcctga gcatcccgag gccccgcaca
     2341 agcccagccc acccaagccg gcgctggcac ccggccaggc cccggccccg ctgaccagtg
     2401 ggggtggcca tggagaccct gggctcccag ggaccagcga ccgcggaggt cgggaccctc
     2461 ccactgcccc agcgctgtcc acgccggagg agccctctgc cgagcggggc ctcccgaaga
     2521 gttcagggag agcaggcgtt gcaggcaagc agccctccag gaagcctgct gtcgccaggg
     2581 gagaacttag agaacaggtc gaccctgcca gggccgcgac ccatttgtcg ccaggcgtca
     2641 ttggaaacgc ggttcaggtg gtcccttcca tccccagagg taaactgccc atcctgccct
     2701 actcaagaac gagggcgtcg caagtttaca aaggcggagc cgctgtgaac gttgcagatg
     2761 tttctctccc tgggctcagg gcagccagtg ataagacctc gtccatcccg gagggcttct
     2821 gttcggcccc gcaggtggcc gacagggcac ctgccccaca ggcgtcgagg cagagcccct
     2881 ttgacagggc ctactgtccg gccaccaaag ccgacctcaa ccacaaaaca aaaccgaacg
     2941 gcggggcagc caagagaaga ggaagaaaac ggaaggtccc cgatgaactt ctgacatttc
     3001 agggtaaaag gaggaaatgt gtcagtaata agtgtaaaga tggcaaagaa agagccaaag
     3061 ccgatcccca ggaatccagg gaccaaaaac ctggggctgt gaaaaaatac cgtagcatca
     3121 tgcccaaacc tgtcctggtc ctgccggccc tggctcccct ggcctcgccc acggccacgt
     3181 tacagccccc ggcgcccggc agccgggagc acgcgtcgtt caatcactcc ctcgccgccc
     3241 ccaagcatct gggctgcagg caggacgacg gcccctcccc gaagcccggc tcggccttta
     3301 gaagtgggtt ctccggcctc aagaagcctt cgcacggatg ccacgtgtgc gagcacgcct
     3361 tccagcccaa gcagcacctc cgcgagcgcg ccaacacgca cagcgacagc cggccctaca
     3421 gctgccggct ctgccgcaaa gcctacgtgc ggccgggcag cctgagcgca cacgtgcggc
     3481 tgcatcacgg cgactcccgg cccaggaggc tcgtgtgctg cgaattctgc gcgaaggtgt
     3541 tcggccacgt cagagtctac ttcggccacc tgaaagaggt gcacggggtg gccgtcagca
     3601 ccgagccctc cccctgcgag ccgcagctgc agccggggga cttgctgagg accagggagc
     3661 agactgcccg agggatggag ggaccggtgg acagggagac caagtccagc ctggaagaag
     3721 acctccttct aaaccaggct gatgaggtca agttccagat cagatgtggc cgctgtcaga
     3781 tcactgccca gtcttttgct gaaatcaagt tccacctgct ttacgttcat ggagaggaaa
     3841 tccagggcca gttgcaagag gagctctcac cctccccagg aagcagggga gctcagggag
     3901 aactggttca acaggctgct cctttctgga aacatcctga gagaagaaag cagcttaagc
     3961 accgtccctt ggacggggaa ctctgtgcag tccccagact gaaaaagcaa ctctacctcc
     4021 gtcatcagaa tgatgtggag atacttgcga aacgtgaagg agcccagccg ggacccagtg
     4081 agcccggagg acacccccag ggccccgagg gtctcggccc cgacgctgcc ctctccccgc
     4141 cccggcctgg ctttcgctgc atcctttgtg cacagacgct gggaaggaag gaagagctgc
     4201 tcctgcattg ggaagagcgc cacaagtgcg aggaccctct gaaactctgg acggttctca
     4261 gcacgctctc cagccagggg gtcatcgaac cttccagcga gaccggaaaa tgagacaggg
     4321 agccgggggg taaggggagg ttttctctcc gcttcctctg ttccttggtg gtgcttaata
     4381 ccaaaaatga agcaggttag gatcagcgtt aatgagcaca gtgagttttg tacagtctta
     4441 ttttattatg aaatatatat gtacggggct tgcctggtgg cgcagtggtt gagagtccgc
     4501 ctgccgatgc aggggacgcg ggttcgtgcc ccggtctggg aagatcccac atgccgcgga
     4561 gcggctgggc ccgtgagcca tggccgctga gcctgtgcgt ccggagcctg tgctccgcaa
     4621 cgggagaggc cacaacagtg agaggcccgc gtaccgcaaa ataaatatat atatatatat
     4681 acacagacac acacacacac acacacacac acacacacac acacacacac acacacatat
     4741 atatgtacat atgcccttga tgcctatttt tctaacataa tgcagtttta ttttaaaatt
     4801 ctatgttctg ttagtatctg agactttatt tcagattcaa taaaaagata aatttgcaga
     4861 ttgaaa
//
LOCUS       XM_032618977            3374 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X6, mRNA.
ACCESSION   XM_032618977
VERSION     XM_032618977.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3374
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3374
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 11 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     CDS             230..2821
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X3"
                     /protein_id="XP_032474868.1"
                     /db_xref="GeneID:116747151"
                     /translation="MRIVVQVKDIIMQSASSVPPKDQGGVSRLASPVEKQLTQKKSAS
                     PGKTARTGESNSPPGTIQGGKGLQGKSQFRTIAPKLAPRVLAPRVVPGPAPSLSDHAH
                     PGPSLGSKALGLPPQNYALMQVAGQEGTFSLVALPHVASAQPLQKPRLPLPKNLKLPI
                     PRYQRPGHSKGARKKPGFSSSDRGCSQAPAQTQAAPPLPEHPEAPHKPSPPKPALAPG
                     QAPAPLTSGGGHGDPGLPGTSDRGGRDPPTAPALSTPEEPSAERGLPKSSGRAGVAGK
                     QPSRKPAVARGELREQVDPARAATHLSPGVIGNAVQVVPSIPRGKLPILPYSRTRASQ
                     VYKGGAAVNVADVSLPGLRAASDKTSSIPEGFCSAPQVADRAPAPQASRQSPFDRAYC
                     PATKADLNHKTKPNGGAAKRRGRKRKVPDELLTFQGKRRKCVSNKCKDGKERAKADPQ
                     ESRDQKPGAVKKYRSIMPKPVLVLPALAPLASPTATLQPPAPGSREHASFNHSLAAPK
                     HLGCRQDDGPSPKPGSAFRSGFSGLKKPSHGCHVCEHAFQPKQHLRERANTHSDSRPY
                     SCRLCRKAYVRPGSLSAHVRLHHGDSRPRRLVCCEFCAKVFGHVRVYFGHLKEVHGVA
                     VSTEPSPCEPQLQPGDLLRTREQTARGMEGPVDRETKSSLEEDLLLNQADEVKFQIRC
                     GRCQITAQSFAEIKFHLLYVHGEEIQGQLQEELSPSPGSRGAQGELVQQAAPFWKHPE
                     RRKQLKHRPLDGELCAVPRLKKQLYLRHQNDVEILAKREGAQPGPSEPGGHPQGPEGL
                     GPDAALSPPRPGFRCILCAQTLGRKEELLLHWEERHKCEDPLKLWTVLSTLSSQGVIE
                     PSSETGK"
     misc_feature    <362..1381
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1847..1909
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1847..1849,1856..1858,1895..1897,1907..1909)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1862..1864,1868..1870,1874..1876,1880..1885,
                     1892..1897,1904..1906,1946..1948,1952..1954,1964..1969,
                     1976..1981,1988..1990,2042..2044,2048..2050,2054..2056,
                     2060..2065,2072..2077)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1931..1993
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2027..2083
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gggggcgggc ggcggcgacc cgcggcctga cctgcccggg cgccgggtct cgtgacgtca
       61 cctcgccgtg acgcgcacgc ggtaggaaaa ctgattaaat taaaaggatt taccatacat
      121 cttatgactc tttactggag ccttgggagt tagataaaga tgaatgtcat gtctcaacca
      181 acgctgaaaa tgagaagttt agaagacatt tgctaagtca agtcacctca tgcgaattgt
      241 cgttcaagtc aaagacatca taatgcagag tgcttcatca gtaccaccga aagatcaagg
      301 aggtgtttcc cggctcgcca gtcctgttga gaaacagctg actcagaaga agtccgcatc
      361 tcctggaaag acagcgcgca caggtgaatc aaacagccct cctggaacga ttcagggtgg
      421 gaagggtctg cagggtaaga gtcagtttag aaccatcgct ccaaaacttg cgccccgagt
      481 cctggcgccc agagtggtcc cgggtccggc gccctccctc tctgaccacg cgcatccagg
      541 cccctccctc ggctcgaagg ccctggggct gcccccccag aattacgcgc tgatgcaggt
      601 ggccggccag gaagggacct tctctctcgt cgctctgcca cacgtcgcct cggctcagcc
      661 actccagaaa cccagactgc ctctgcccaa gaacctgaag ctgcccatcc cccggtacca
      721 acgcccagga catagcaaag gagccagaaa gaaaccgggg ttcagctcct ccgacagggg
      781 ctgtagccaa gctcccgccc aaacccaagc ggcccctccc ctgcctgagc atcccgaggc
      841 cccgcacaag cccagcccac ccaagccggc gctggcaccc ggccaggccc cggccccgct
      901 gaccagtggg ggtggccatg gagaccctgg gctcccaggg accagcgacc gcggaggtcg
      961 ggaccctccc actgccccag cgctgtccac gccggaggag ccctctgccg agcggggcct
     1021 cccgaagagt tcagggagag caggcgttgc aggcaagcag ccctccagga agcctgctgt
     1081 cgccagggga gaacttagag aacaggtcga ccctgccagg gccgcgaccc atttgtcgcc
     1141 aggcgtcatt ggaaacgcgg ttcaggtggt cccttccatc cccagaggta aactgcccat
     1201 cctgccctac tcaagaacga gggcgtcgca agtttacaaa ggcggagccg ctgtgaacgt
     1261 tgcagatgtt tctctccctg ggctcagggc agccagtgat aagacctcgt ccatcccgga
     1321 gggcttctgt tcggccccgc aggtggccga cagggcacct gccccacagg cgtcgaggca
     1381 gagccccttt gacagggcct actgtccggc caccaaagcc gacctcaacc acaaaacaaa
     1441 accgaacggc ggggcagcca agagaagagg aagaaaacgg aaggtccccg atgaacttct
     1501 gacatttcag ggtaaaagga ggaaatgtgt cagtaataag tgtaaagatg gcaaagaaag
     1561 agccaaagcc gatccccagg aatccaggga ccaaaaacct ggggctgtga aaaaataccg
     1621 tagcatcatg cccaaacctg tcctggtcct gccggccctg gctcccctgg cctcgcccac
     1681 ggccacgtta cagcccccgg cgcccggcag ccgggagcac gcgtcgttca atcactccct
     1741 cgccgccccc aagcatctgg gctgcaggca ggacgacggc ccctccccga agcccggctc
     1801 ggcctttaga agtgggttct ccggcctcaa gaagccttcg cacggatgcc acgtgtgcga
     1861 gcacgccttc cagcccaagc agcacctccg cgagcgcgcc aacacgcaca gcgacagccg
     1921 gccctacagc tgccggctct gccgcaaagc ctacgtgcgg ccgggcagcc tgagcgcaca
     1981 cgtgcggctg catcacggcg actcccggcc caggaggctc gtgtgctgcg aattctgcgc
     2041 gaaggtgttc ggccacgtca gagtctactt cggccacctg aaagaggtgc acggggtggc
     2101 cgtcagcacc gagccctccc cctgcgagcc gcagctgcag ccgggggact tgctgaggac
     2161 cagggagcag actgcccgag ggatggaggg accggtggac agggagacca agtccagcct
     2221 ggaagaagac ctccttctaa accaggctga tgaggtcaag ttccagatca gatgtggccg
     2281 ctgtcagatc actgcccagt cttttgctga aatcaagttc cacctgcttt acgttcatgg
     2341 agaggaaatc cagggccagt tgcaagagga gctctcaccc tccccaggaa gcaggggagc
     2401 tcagggagaa ctggttcaac aggctgctcc tttctggaaa catcctgaga gaagaaagca
     2461 gcttaagcac cgtcccttgg acggggaact ctgtgcagtc cccagactga aaaagcaact
     2521 ctacctccgt catcagaatg atgtggagat acttgcgaaa cgtgaaggag cccagccggg
     2581 acccagtgag cccggaggac acccccaggg ccccgagggt ctcggccccg acgctgccct
     2641 ctccccgccc cggcctggct ttcgctgcat cctttgtgca cagacgctgg gaaggaagga
     2701 agagctgctc ctgcattggg aagagcgcca caagtgcgag gaccctctga aactctggac
     2761 ggttctcagc acgctctcca gccagggggt catcgaacct tccagcgaga ccggaaaatg
     2821 agacagggag ccggggggta aggggaggtt ttctctccgc ttcctctgtt ccttggtggt
     2881 gcttaatacc aaaaatgaag caggttagga tcagcgttaa tgagcacagt gagttttgta
     2941 cagtcttatt ttattatgaa atatatatgt acggggcttg cctggtggcg cagtggttga
     3001 gagtccgcct gccgatgcag gggacgcggg ttcgtgcccc ggtctgggaa gatcccacat
     3061 gccgcggagc ggctgggccc gtgagccatg gccgctgagc ctgtgcgtcc ggagcctgtg
     3121 ctccgcaacg ggagaggcca caacagtgag aggcccgcgt accgcaaaat aaatatatat
     3181 atatatatac acagacacac acacacacac acacacacac acacacacac acacacacac
     3241 acacatatat atgtacatat gcccttgatg cctatttttc taacataatg cagttttatt
     3301 ttaaaattct atgttctgtt agtatctgag actttatttc agattcaata aaaagataaa
     3361 tttgcagatt gaaa
//
LOCUS       XM_032618982            4874 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X7, mRNA.
ACCESSION   XM_032618982
VERSION     XM_032618982.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4874
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4874
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 11 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     CDS             1763..4321
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X4"
                     /protein_id="XP_032474873.1"
                     /db_xref="GeneID:116747151"
                     /translation="MQSASSVPPKDQGGVSRLASPVEKQLTQKKSASPGKTARTGESN
                     SPPGTIQGGKGLQGKSQFRTIAPKLAPRVLAPRVVPGPAPSLSDHAHPGPSLGSKALG
                     LPPQNYALMQVAGQEGTFSLVALPHVASAQPLQKPRLPLPKNLKLPIPRYQRPGHSKG
                     ARKKPGFSSSDRGCSQAPAQTQAAPPLPEHPEAPHKPSPPKPALAPGQAPAPLTSGGG
                     HGDPGLPGTSDRGGRDPPTAPALSTPEEPSAERGLPKSSGRAGVAGKQPSRKPAVARG
                     ELREQVDPARAATHLSPGVIGNAVQVVPSIPRGKLPILPYSRTRASQVYKGGAAVNVA
                     DVSLPGLRAASDKTSSIPEGFCSAPQVADRAPAPQASRQSPFDRAYCPATKADLNHKT
                     KPNGGAAKRRGRKRKVPDELLTFQGKRRKCVSNKCKDGKERAKADPQESRDQKPGAVK
                     KYRSIMPKPVLVLPALAPLASPTATLQPPAPGSREHASFNHSLAAPKHLGCRQDDGPS
                     PKPGSAFRSGFSGLKKPSHGCHVCEHAFQPKQHLRERANTHSDSRPYSCRLCRKAYVR
                     PGSLSAHVRLHHGDSRPRRLVCCEFCAKVFGHVRVYFGHLKEVHGVAVSTEPSPCEPQ
                     LQPGDLLRTREQTARGMEGPVDRETKSSLEEDLLLNQADEVKFQIRCGRCQITAQSFA
                     EIKFHLLYVHGEEIQGQLQEELSPSPGSRGAQGELVQQAAPFWKHPERRKQLKHRPLD
                     GELCAVPRLKKQLYLRHQNDVEILAKREGAQPGPSEPGGHPQGPEGLGPDAALSPPRP
                     GFRCILCAQTLGRKEELLLHWEERHKCEDPLKLWTVLSTLSSQGVIEPSSETGK"
     misc_feature    <1862..2881
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3347..3409
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3347..3349,3356..3358,3395..3397,3407..3409)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3362..3364,3368..3370,3374..3376,3380..3385,
                     3392..3397,3404..3406,3446..3448,3452..3454,3464..3469,
                     3476..3481,3488..3490,3542..3544,3548..3550,3554..3556,
                     3560..3565,3572..3577)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3431..3493
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3527..3583
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtgttgagag tggggaggtg ggagagtctt gctgccccct ggggagagac ggtgggcgcc
       61 tgcactaggg aggtactggc gaggtgatgg tacgtgggca aagtcgtgga aagcttctga
      121 agccaggagt gctggtgtgg acttactagt tggagggtgg ggaaaaggaa gaagtgatga
      181 cttctcaggt tttaggctgg aacagctgga tggatagtgg cgctgtttcc cgagacgaga
      241 gaaaggggtt tgggaagaaa accgtgcatt ctgttttgga cgagttttag gcgcctgaca
      301 gacatagtaa cagcagtact ggcactagga ataacaggaa gcaccgtgta agcgtgaact
      361 gtgtgcccga tggggtttta agcatgttta cacatgttaa ttcatttaat ccttatatca
      421 cagctgtgtg tgccaggagc cctcggggtc cccactttac gcgggagaag acagaggcac
      481 agagaggttc aaagtgaccc gcctgctggc acccagctgg gcagtgatgg agctgggatt
      541 caaaccccaa gccgtctaac ttccaagccc atgcggttta tccctgtaac gccctgcaag
      601 tcgacacgtt gagtaggccc ttggatgtat gaatgtggaa ctcaggggaa tggtcggggc
      661 tgaagacaca cgtttgtgtt tcttaagaga aagccctctt tggttcctca ttaagccttg
      721 attggcaagg ggggaaagga gcacaggcag ttggcgctgt gctaactggc ctttcattac
      781 ttgattccgt tcaggcagcc aacatccacc cgggctgagg tccgtatctc ttctacttgt
      841 ctgtgtctgg tcccgagtct ggcgcttgcc atggagtaga tgttaggtat gactttatat
      901 gcaggacatg gctgaggttt ggggagttca gaggtgaata aaacatagct ctctttctgg
      961 aggaaggacc cgtggggata aaactagagt gggcggagcg cacgctaatg agctcacgct
     1021 ggccttcttg ccgcccctgc tctgccccgc acgcttgagg ggtggggcgg ggcggggggc
     1081 cagaggagca aaagaaggcc tgcgcggccg cagcatggat tcgaggttcc ccaagagtcc
     1141 ttttcaagaa aagaatgact cagagccttg cctagtttac tatatttgca ttagttttat
     1201 ttggcaaccg tataattttt cccaagtgaa atacagtttg atatttgaat atcgtggtgg
     1261 agtgatgagt ttttccagtt ctgttacatc agtgttgaca gggccagctg gtgaaataag
     1321 ggagttgcct taaaatgttg cagcttgcat aatagagggc gatggagggg ttgtgtgaag
     1381 tgtttaggca ggtttccgcc tggttaagtg aatcaggcta aagttccaca catcggaatg
     1441 agtttgagtt tctctgtgga tcatcccgct aacactgagc tgtatttctt gtcagagaaa
     1501 gaggatctgg tgatatttgt catgagtgga actgtgtgga acaatgtgga aacacaggaa
     1561 cttgaaccat acatacaaaa ctaggattaa attaaaagga tttaccatac atcttatgac
     1621 tctttactgg agccttggga gttagatatt gttttctata agtggagcat agttggattt
     1681 catagttgga tttttttaac ctaatggcga ggaacctttg ccttttaaca ggcgaattgt
     1741 cgttcaagtc aaagacatca taatgcagag tgcttcatca gtaccaccga aagatcaagg
     1801 aggtgtttcc cggctcgcca gtcctgttga gaaacagctg actcagaaga agtccgcatc
     1861 tcctggaaag acagcgcgca caggtgaatc aaacagccct cctggaacga ttcagggtgg
     1921 gaagggtctg cagggtaaga gtcagtttag aaccatcgct ccaaaacttg cgccccgagt
     1981 cctggcgccc agagtggtcc cgggtccggc gccctccctc tctgaccacg cgcatccagg
     2041 cccctccctc ggctcgaagg ccctggggct gcccccccag aattacgcgc tgatgcaggt
     2101 ggccggccag gaagggacct tctctctcgt cgctctgcca cacgtcgcct cggctcagcc
     2161 actccagaaa cccagactgc ctctgcccaa gaacctgaag ctgcccatcc cccggtacca
     2221 acgcccagga catagcaaag gagccagaaa gaaaccgggg ttcagctcct ccgacagggg
     2281 ctgtagccaa gctcccgccc aaacccaagc ggcccctccc ctgcctgagc atcccgaggc
     2341 cccgcacaag cccagcccac ccaagccggc gctggcaccc ggccaggccc cggccccgct
     2401 gaccagtggg ggtggccatg gagaccctgg gctcccaggg accagcgacc gcggaggtcg
     2461 ggaccctccc actgccccag cgctgtccac gccggaggag ccctctgccg agcggggcct
     2521 cccgaagagt tcagggagag caggcgttgc aggcaagcag ccctccagga agcctgctgt
     2581 cgccagggga gaacttagag aacaggtcga ccctgccagg gccgcgaccc atttgtcgcc
     2641 aggcgtcatt ggaaacgcgg ttcaggtggt cccttccatc cccagaggta aactgcccat
     2701 cctgccctac tcaagaacga gggcgtcgca agtttacaaa ggcggagccg ctgtgaacgt
     2761 tgcagatgtt tctctccctg ggctcagggc agccagtgat aagacctcgt ccatcccgga
     2821 gggcttctgt tcggccccgc aggtggccga cagggcacct gccccacagg cgtcgaggca
     2881 gagccccttt gacagggcct actgtccggc caccaaagcc gacctcaacc acaaaacaaa
     2941 accgaacggc ggggcagcca agagaagagg aagaaaacgg aaggtccccg atgaacttct
     3001 gacatttcag ggtaaaagga ggaaatgtgt cagtaataag tgtaaagatg gcaaagaaag
     3061 agccaaagcc gatccccagg aatccaggga ccaaaaacct ggggctgtga aaaaataccg
     3121 tagcatcatg cccaaacctg tcctggtcct gccggccctg gctcccctgg cctcgcccac
     3181 ggccacgtta cagcccccgg cgcccggcag ccgggagcac gcgtcgttca atcactccct
     3241 cgccgccccc aagcatctgg gctgcaggca ggacgacggc ccctccccga agcccggctc
     3301 ggcctttaga agtgggttct ccggcctcaa gaagccttcg cacggatgcc acgtgtgcga
     3361 gcacgccttc cagcccaagc agcacctccg cgagcgcgcc aacacgcaca gcgacagccg
     3421 gccctacagc tgccggctct gccgcaaagc ctacgtgcgg ccgggcagcc tgagcgcaca
     3481 cgtgcggctg catcacggcg actcccggcc caggaggctc gtgtgctgcg aattctgcgc
     3541 gaaggtgttc ggccacgtca gagtctactt cggccacctg aaagaggtgc acggggtggc
     3601 cgtcagcacc gagccctccc cctgcgagcc gcagctgcag ccgggggact tgctgaggac
     3661 cagggagcag actgcccgag ggatggaggg accggtggac agggagacca agtccagcct
     3721 ggaagaagac ctccttctaa accaggctga tgaggtcaag ttccagatca gatgtggccg
     3781 ctgtcagatc actgcccagt cttttgctga aatcaagttc cacctgcttt acgttcatgg
     3841 agaggaaatc cagggccagt tgcaagagga gctctcaccc tccccaggaa gcaggggagc
     3901 tcagggagaa ctggttcaac aggctgctcc tttctggaaa catcctgaga gaagaaagca
     3961 gcttaagcac cgtcccttgg acggggaact ctgtgcagtc cccagactga aaaagcaact
     4021 ctacctccgt catcagaatg atgtggagat acttgcgaaa cgtgaaggag cccagccggg
     4081 acccagtgag cccggaggac acccccaggg ccccgagggt ctcggccccg acgctgccct
     4141 ctccccgccc cggcctggct ttcgctgcat cctttgtgca cagacgctgg gaaggaagga
     4201 agagctgctc ctgcattggg aagagcgcca caagtgcgag gaccctctga aactctggac
     4261 ggttctcagc acgctctcca gccagggggt catcgaacct tccagcgaga ccggaaaatg
     4321 agacagggag ccggggggta aggggaggtt ttctctccgc ttcctctgtt ccttggtggt
     4381 gcttaatacc aaaaatgaag caggttagga tcagcgttaa tgagcacagt gagttttgta
     4441 cagtcttatt ttattatgaa atatatatgt acggggcttg cctggtggcg cagtggttga
     4501 gagtccgcct gccgatgcag gggacgcggg ttcgtgcccc ggtctgggaa gatcccacat
     4561 gccgcggagc ggctgggccc gtgagccatg gccgctgagc ctgtgcgtcc ggagcctgtg
     4621 ctccgcaacg ggagaggcca caacagtgag aggcccgcgt accgcaaaat aaatatatat
     4681 atatatatac acagacacac acacacacac acacacacac acacacacac acacacacac
     4741 acacatatat atgtacatat gcccttgatg cctatttttc taacataatg cagttttatt
     4801 ttaaaattct atgttctgtt agtatctgag actttatttc agattcaata aaaagataaa
     4861 tttgcagatt gaaa
//
LOCUS       XM_032618988            4788 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X8, mRNA.
ACCESSION   XM_032618988
VERSION     XM_032618988.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4788
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4788
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 11 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     CDS             1677..4235
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X4"
                     /protein_id="XP_032474879.1"
                     /db_xref="GeneID:116747151"
                     /translation="MQSASSVPPKDQGGVSRLASPVEKQLTQKKSASPGKTARTGESN
                     SPPGTIQGGKGLQGKSQFRTIAPKLAPRVLAPRVVPGPAPSLSDHAHPGPSLGSKALG
                     LPPQNYALMQVAGQEGTFSLVALPHVASAQPLQKPRLPLPKNLKLPIPRYQRPGHSKG
                     ARKKPGFSSSDRGCSQAPAQTQAAPPLPEHPEAPHKPSPPKPALAPGQAPAPLTSGGG
                     HGDPGLPGTSDRGGRDPPTAPALSTPEEPSAERGLPKSSGRAGVAGKQPSRKPAVARG
                     ELREQVDPARAATHLSPGVIGNAVQVVPSIPRGKLPILPYSRTRASQVYKGGAAVNVA
                     DVSLPGLRAASDKTSSIPEGFCSAPQVADRAPAPQASRQSPFDRAYCPATKADLNHKT
                     KPNGGAAKRRGRKRKVPDELLTFQGKRRKCVSNKCKDGKERAKADPQESRDQKPGAVK
                     KYRSIMPKPVLVLPALAPLASPTATLQPPAPGSREHASFNHSLAAPKHLGCRQDDGPS
                     PKPGSAFRSGFSGLKKPSHGCHVCEHAFQPKQHLRERANTHSDSRPYSCRLCRKAYVR
                     PGSLSAHVRLHHGDSRPRRLVCCEFCAKVFGHVRVYFGHLKEVHGVAVSTEPSPCEPQ
                     LQPGDLLRTREQTARGMEGPVDRETKSSLEEDLLLNQADEVKFQIRCGRCQITAQSFA
                     EIKFHLLYVHGEEIQGQLQEELSPSPGSRGAQGELVQQAAPFWKHPERRKQLKHRPLD
                     GELCAVPRLKKQLYLRHQNDVEILAKREGAQPGPSEPGGHPQGPEGLGPDAALSPPRP
                     GFRCILCAQTLGRKEELLLHWEERHKCEDPLKLWTVLSTLSSQGVIEPSSETGK"
     misc_feature    <1776..2795
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    3261..3323
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3261..3263,3270..3272,3309..3311,3321..3323)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3276..3278,3282..3284,3288..3290,3294..3299,
                     3306..3311,3318..3320,3360..3362,3366..3368,3378..3383,
                     3390..3395,3402..3404,3456..3458,3462..3464,3468..3470,
                     3474..3479,3486..3491)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3345..3407
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3441..3497
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtgttgagag tggggaggtg ggagagtctt gctgccccct ggggagagac ggtgggcgcc
       61 tgcactaggg aggtactggc gaggtgatgg tacgtgggca aagtcgtgga aagcttctga
      121 agccaggagt gctggtgtgg acttactagt tggagggtgg ggaaaaggaa gaagtgatga
      181 cttctcaggt tttaggctgg aacagctgga tggatagtgg cgctgtttcc cgagacgaga
      241 gaaaggggtt tgggaagaaa accgtgcatt ctgttttgga cgagttttag gcgcctgaca
      301 gacatagtaa cagcagtact ggcactagga ataacaggaa gcaccgtgta agcgtgaact
      361 gtgtgcccga tggggtttta agcatgttta cacatgttaa ttcatttaat ccttatatca
      421 cagctgtgtg tgccaggagc cctcggggtc cccactttac gcgggagaag acagaggcac
      481 agagaggttc aaagtgaccc gcctgctggc acccagctgg gcagtgatgg agctgggatt
      541 caaaccccaa gccgtctaac ttccaagccc atgcggttta tccctgtaac gccctgcaag
      601 tcgacacgtt gagtaggccc ttggatgtat gaatgtggaa ctcaggggaa tggtcggggc
      661 tgaagacaca cgtttgtgtt tcttaagaga aagccctctt tggttcctca ttaagccttg
      721 attggcaagg ggggaaagga gcacaggcag ttggcgctgt gctaactggc ctttcattac
      781 ttgattccgt tcaggcagcc aacatccacc cgggctgagg tccgtatctc ttctacttgt
      841 ctgtgtctgg tcccgagtct ggcgcttgcc atggagtaga tgttaggtat gactttatat
      901 gcaggacatg gctgaggttt ggggagttca gaggtgaata aaacatagct ctctttctgg
      961 aggaaggacc cgtggggata aaactagagt gggcggagcg cacgctaatg agctcacgct
     1021 ggccttcttg ccgcccctgc tctgccccgc acgcttgagg ggtggggcgg ggcggggggc
     1081 cagaggagca aaagaaggcc tgcgcggccg cagcatggat tcgaggttcc ccaagagtcc
     1141 ttttcaagaa aagaatgact cagagccttg cctagtttac tatatttgca ttagttttat
     1201 ttggcaaccg tataattttt cccaagtgaa atacagtttg atatttgaat atcgtggtgg
     1261 agtgatgagt ttttccagtt ctgttacatc agtgttgaca gggccagctg gtgaaataag
     1321 ggagttgcct taaaatgttg cagcttgcat aatagagggc gatggagggg ttgtgtgaag
     1381 tgtttaggca ggtttccgcc tggttaagtg aatcaggcta aagttccaca catcggaatg
     1441 agtttgagtt tctctgtgga tcatcccgct aacactgagc tgtatttctt gtcagagaaa
     1501 gaggatctgg tgatatttgt catgagtgga actgtgtgga acaatgtgga aacacaggaa
     1561 cttgaaccat acatacaaaa ctaggattaa attaaaagga tttaccatac atcttatgac
     1621 tctttactgg agccttggga gttaggcgaa ttgtcgttca agtcaaagac atcataatgc
     1681 agagtgcttc atcagtacca ccgaaagatc aaggaggtgt ttcccggctc gccagtcctg
     1741 ttgagaaaca gctgactcag aagaagtccg catctcctgg aaagacagcg cgcacaggtg
     1801 aatcaaacag ccctcctgga acgattcagg gtgggaaggg tctgcagggt aagagtcagt
     1861 ttagaaccat cgctccaaaa cttgcgcccc gagtcctggc gcccagagtg gtcccgggtc
     1921 cggcgccctc cctctctgac cacgcgcatc caggcccctc cctcggctcg aaggccctgg
     1981 ggctgccccc ccagaattac gcgctgatgc aggtggccgg ccaggaaggg accttctctc
     2041 tcgtcgctct gccacacgtc gcctcggctc agccactcca gaaacccaga ctgcctctgc
     2101 ccaagaacct gaagctgccc atcccccggt accaacgccc aggacatagc aaaggagcca
     2161 gaaagaaacc ggggttcagc tcctccgaca ggggctgtag ccaagctccc gcccaaaccc
     2221 aagcggcccc tcccctgcct gagcatcccg aggccccgca caagcccagc ccacccaagc
     2281 cggcgctggc acccggccag gccccggccc cgctgaccag tgggggtggc catggagacc
     2341 ctgggctccc agggaccagc gaccgcggag gtcgggaccc tcccactgcc ccagcgctgt
     2401 ccacgccgga ggagccctct gccgagcggg gcctcccgaa gagttcaggg agagcaggcg
     2461 ttgcaggcaa gcagccctcc aggaagcctg ctgtcgccag gggagaactt agagaacagg
     2521 tcgaccctgc cagggccgcg acccatttgt cgccaggcgt cattggaaac gcggttcagg
     2581 tggtcccttc catccccaga ggtaaactgc ccatcctgcc ctactcaaga acgagggcgt
     2641 cgcaagttta caaaggcgga gccgctgtga acgttgcaga tgtttctctc cctgggctca
     2701 gggcagccag tgataagacc tcgtccatcc cggagggctt ctgttcggcc ccgcaggtgg
     2761 ccgacagggc acctgcccca caggcgtcga ggcagagccc ctttgacagg gcctactgtc
     2821 cggccaccaa agccgacctc aaccacaaaa caaaaccgaa cggcggggca gccaagagaa
     2881 gaggaagaaa acggaaggtc cccgatgaac ttctgacatt tcagggtaaa aggaggaaat
     2941 gtgtcagtaa taagtgtaaa gatggcaaag aaagagccaa agccgatccc caggaatcca
     3001 gggaccaaaa acctggggct gtgaaaaaat accgtagcat catgcccaaa cctgtcctgg
     3061 tcctgccggc cctggctccc ctggcctcgc ccacggccac gttacagccc ccggcgcccg
     3121 gcagccggga gcacgcgtcg ttcaatcact ccctcgccgc ccccaagcat ctgggctgca
     3181 ggcaggacga cggcccctcc ccgaagcccg gctcggcctt tagaagtggg ttctccggcc
     3241 tcaagaagcc ttcgcacgga tgccacgtgt gcgagcacgc cttccagccc aagcagcacc
     3301 tccgcgagcg cgccaacacg cacagcgaca gccggcccta cagctgccgg ctctgccgca
     3361 aagcctacgt gcggccgggc agcctgagcg cacacgtgcg gctgcatcac ggcgactccc
     3421 ggcccaggag gctcgtgtgc tgcgaattct gcgcgaaggt gttcggccac gtcagagtct
     3481 acttcggcca cctgaaagag gtgcacgggg tggccgtcag caccgagccc tccccctgcg
     3541 agccgcagct gcagccgggg gacttgctga ggaccaggga gcagactgcc cgagggatgg
     3601 agggaccggt ggacagggag accaagtcca gcctggaaga agacctcctt ctaaaccagg
     3661 ctgatgaggt caagttccag atcagatgtg gccgctgtca gatcactgcc cagtcttttg
     3721 ctgaaatcaa gttccacctg ctttacgttc atggagagga aatccagggc cagttgcaag
     3781 aggagctctc accctcccca ggaagcaggg gagctcaggg agaactggtt caacaggctg
     3841 ctcctttctg gaaacatcct gagagaagaa agcagcttaa gcaccgtccc ttggacgggg
     3901 aactctgtgc agtccccaga ctgaaaaagc aactctacct ccgtcatcag aatgatgtgg
     3961 agatacttgc gaaacgtgaa ggagcccagc cgggacccag tgagcccgga ggacaccccc
     4021 agggccccga gggtctcggc cccgacgctg ccctctcccc gccccggcct ggctttcgct
     4081 gcatcctttg tgcacagacg ctgggaagga aggaagagct gctcctgcat tgggaagagc
     4141 gccacaagtg cgaggaccct ctgaaactct ggacggttct cagcacgctc tccagccagg
     4201 gggtcatcga accttccagc gagaccggaa aatgagacag ggagccgggg ggtaagggga
     4261 ggttttctct ccgcttcctc tgttccttgg tggtgcttaa taccaaaaat gaagcaggtt
     4321 aggatcagcg ttaatgagca cagtgagttt tgtacagtct tattttatta tgaaatatat
     4381 atgtacgggg cttgcctggt ggcgcagtgg ttgagagtcc gcctgccgat gcaggggacg
     4441 cgggttcgtg ccccggtctg ggaagatccc acatgccgcg gagcggctgg gcccgtgagc
     4501 catggccgct gagcctgtgc gtccggagcc tgtgctccgc aacgggagag gccacaacag
     4561 tgagaggccc gcgtaccgca aaataaatat atatatatat atacacagac acacacacac
     4621 acacacacac acacacacac acacacacac acacacacat atatatgtac atatgccctt
     4681 gatgcctatt tttctaacat aatgcagttt tattttaaaa ttctatgttc tgttagtatc
     4741 tgagacttta tttcagattc aataaaaaga taaatttgca gattgaaa
//
LOCUS       XM_032618994            3450 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X9, mRNA.
ACCESSION   XM_032618994
VERSION     XM_032618994.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3450
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3450
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 11 Proteins, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747151"
     CDS             249..2897
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X1"
                     /protein_id="XP_032474885.1"
                     /db_xref="GeneID:116747151"
                     /translation="MIAFTSFVSCLSKISLRHLRRIVVQVKDIIMQSASSVPPKDQGG
                     VSRLASPVEKQLTQKKSASPGKTARTGESNSPPGTIQGGKGLQGKSQFRTIAPKLAPR
                     VLAPRVVPGPAPSLSDHAHPGPSLGSKALGLPPQNYALMQVAGQEGTFSLVALPHVAS
                     AQPLQKPRLPLPKNLKLPIPRYQRPGHSKGARKKPGFSSSDRGCSQAPAQTQAAPPLP
                     EHPEAPHKPSPPKPALAPGQAPAPLTSGGGHGDPGLPGTSDRGGRDPPTAPALSTPEE
                     PSAERGLPKSSGRAGVAGKQPSRKPAVARGELREQVDPARAATHLSPGVIGNAVQVVP
                     SIPRGKLPILPYSRTRASQVYKGGAAVNVADVSLPGLRAASDKTSSIPEGFCSAPQVA
                     DRAPAPQASRQSPFDRAYCPATKADLNHKTKPNGGAAKRRGRKRKVPDELLTFQGKRR
                     KCVSNKCKDGKERAKADPQESRDQKPGAVKKYRSIMPKPVLVLPALAPLASPTATLQP
                     PAPGSREHASFNHSLAAPKHLGCRQDDGPSPKPGSAFRSGFSGLKKPSHGCHVCEHAF
                     QPKQHLRERANTHSDSRPYSCRLCRKAYVRPGSLSAHVRLHHGDSRPRRLVCCEFCAK
                     VFGHVRVYFGHLKEVHGVAVSTEPSPCEPQLQPGDLLRTREQTARGMEGPVDRETKSS
                     LEEDLLLNQADEVKFQIRCGRCQITAQSFAEIKFHLLYVHGEEIQGQLQEELSPSPGS
                     RGAQGELVQQAAPFWKHPERRKQLKHRPLDGELCAVPRLKKQLYLRHQNDVEILAKRE
                     GAQPGPSEPGGHPQGPEGLGPDAALSPPRPGFRCILCAQTLGRKEELLLHWEERHKCE
                     DPLKLWTVLSTLSSQGVIEPSSETGK"
     misc_feature    <438..1457
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    1923..1985
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1923..1925,1932..1934,1971..1973,1983..1985)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1938..1940,1944..1946,1950..1952,1956..1961,
                     1968..1973,1980..1982,2022..2024,2028..2030,2040..2045,
                     2052..2057,2064..2066,2118..2120,2124..2126,2130..2132,
                     2136..2141,2148..2153)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2007..2069
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2103..2159
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gtgacgtcac ctcgccgtga cgcgcacgcg gtaggaaaac tagaaagagg atctggtgat
       61 atttgtcatg agtggaactg tgtggaacaa tgtggaaaca caggaacttg aaccatacat
      121 acaaaactag gattaaatta aaaggattta ccatacatct tatgactctt tactggagcc
      181 ttgggagtta gctcttttct tcattactct gggaatttcc accagctttc tcccttcctg
      241 cactgtggat gatagcgttc acctcatttg tttcctgtct ctcaaagatc agtcttcgtc
      301 acctaaggcg aattgtcgtt caagtcaaag acatcataat gcagagtgct tcatcagtac
      361 caccgaaaga tcaaggaggt gtttcccggc tcgccagtcc tgttgagaaa cagctgactc
      421 agaagaagtc cgcatctcct ggaaagacag cgcgcacagg tgaatcaaac agccctcctg
      481 gaacgattca gggtgggaag ggtctgcagg gtaagagtca gtttagaacc atcgctccaa
      541 aacttgcgcc ccgagtcctg gcgcccagag tggtcccggg tccggcgccc tccctctctg
      601 accacgcgca tccaggcccc tccctcggct cgaaggccct ggggctgccc ccccagaatt
      661 acgcgctgat gcaggtggcc ggccaggaag ggaccttctc tctcgtcgct ctgccacacg
      721 tcgcctcggc tcagccactc cagaaaccca gactgcctct gcccaagaac ctgaagctgc
      781 ccatcccccg gtaccaacgc ccaggacata gcaaaggagc cagaaagaaa ccggggttca
      841 gctcctccga caggggctgt agccaagctc ccgcccaaac ccaagcggcc cctcccctgc
      901 ctgagcatcc cgaggccccg cacaagccca gcccacccaa gccggcgctg gcacccggcc
      961 aggccccggc cccgctgacc agtgggggtg gccatggaga ccctgggctc ccagggacca
     1021 gcgaccgcgg aggtcgggac cctcccactg ccccagcgct gtccacgccg gaggagccct
     1081 ctgccgagcg gggcctcccg aagagttcag ggagagcagg cgttgcaggc aagcagccct
     1141 ccaggaagcc tgctgtcgcc aggggagaac ttagagaaca ggtcgaccct gccagggccg
     1201 cgacccattt gtcgccaggc gtcattggaa acgcggttca ggtggtccct tccatcccca
     1261 gaggtaaact gcccatcctg ccctactcaa gaacgagggc gtcgcaagtt tacaaaggcg
     1321 gagccgctgt gaacgttgca gatgtttctc tccctgggct cagggcagcc agtgataaga
     1381 cctcgtccat cccggagggc ttctgttcgg ccccgcaggt ggccgacagg gcacctgccc
     1441 cacaggcgtc gaggcagagc ccctttgaca gggcctactg tccggccacc aaagccgacc
     1501 tcaaccacaa aacaaaaccg aacggcgggg cagccaagag aagaggaaga aaacggaagg
     1561 tccccgatga acttctgaca tttcagggta aaaggaggaa atgtgtcagt aataagtgta
     1621 aagatggcaa agaaagagcc aaagccgatc cccaggaatc cagggaccaa aaacctgggg
     1681 ctgtgaaaaa ataccgtagc atcatgccca aacctgtcct ggtcctgccg gccctggctc
     1741 ccctggcctc gcccacggcc acgttacagc ccccggcgcc cggcagccgg gagcacgcgt
     1801 cgttcaatca ctccctcgcc gcccccaagc atctgggctg caggcaggac gacggcccct
     1861 ccccgaagcc cggctcggcc tttagaagtg ggttctccgg cctcaagaag ccttcgcacg
     1921 gatgccacgt gtgcgagcac gccttccagc ccaagcagca cctccgcgag cgcgccaaca
     1981 cgcacagcga cagccggccc tacagctgcc ggctctgccg caaagcctac gtgcggccgg
     2041 gcagcctgag cgcacacgtg cggctgcatc acggcgactc ccggcccagg aggctcgtgt
     2101 gctgcgaatt ctgcgcgaag gtgttcggcc acgtcagagt ctacttcggc cacctgaaag
     2161 aggtgcacgg ggtggccgtc agcaccgagc cctccccctg cgagccgcag ctgcagccgg
     2221 gggacttgct gaggaccagg gagcagactg cccgagggat ggagggaccg gtggacaggg
     2281 agaccaagtc cagcctggaa gaagacctcc ttctaaacca ggctgatgag gtcaagttcc
     2341 agatcagatg tggccgctgt cagatcactg cccagtcttt tgctgaaatc aagttccacc
     2401 tgctttacgt tcatggagag gaaatccagg gccagttgca agaggagctc tcaccctccc
     2461 caggaagcag gggagctcag ggagaactgg ttcaacaggc tgctcctttc tggaaacatc
     2521 ctgagagaag aaagcagctt aagcaccgtc ccttggacgg ggaactctgt gcagtcccca
     2581 gactgaaaaa gcaactctac ctccgtcatc agaatgatgt ggagatactt gcgaaacgtg
     2641 aaggagccca gccgggaccc agtgagcccg gaggacaccc ccagggcccc gagggtctcg
     2701 gccccgacgc tgccctctcc ccgccccggc ctggctttcg ctgcatcctt tgtgcacaga
     2761 cgctgggaag gaaggaagag ctgctcctgc attgggaaga gcgccacaag tgcgaggacc
     2821 ctctgaaact ctggacggtt ctcagcacgc tctccagcca gggggtcatc gaaccttcca
     2881 gcgagaccgg aaaatgagac agggagccgg ggggtaaggg gaggttttct ctccgcttcc
     2941 tctgttcctt ggtggtgctt aataccaaaa atgaagcagg ttaggatcag cgttaatgag
     3001 cacagtgagt tttgtacagt cttattttat tatgaaatat atatgtacgg ggcttgcctg
     3061 gtggcgcagt ggttgagagt ccgcctgccg atgcagggga cgcgggttcg tgccccggtc
     3121 tgggaagatc ccacatgccg cggagcggct gggcccgtga gccatggccg ctgagcctgt
     3181 gcgtccggag cctgtgctcc gcaacgggag aggccacaac agtgagaggc ccgcgtaccg
     3241 caaaataaat atatatatat atatacacag acacacacac acacacacac acacacacac
     3301 acacacacac acacacacac atatatatgt acatatgccc ttgatgccta tttttctaac
     3361 ataatgcagt tttattttaa aattctatgt tctgttagta tctgagactt tatttcagat
     3421 tcaataaaaa gataaatttg cagattgaaa
//
LOCUS       XM_032618997            3758 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X10, mRNA.
ACCESSION   XM_032618997
VERSION     XM_032618997.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3758
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 10 Proteins, and
                     88% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747151"
     CDS             734..3205
                     /gene="ZNF438"
                     /codon_start=1
                     /product="zinc finger protein 438 isoform X5"
                     /protein_id="XP_032474888.1"
                     /db_xref="GeneID:116747151"
                     /translation="MSGASYFLAREGESNSPPGTIQGGKGLQGKSQFRTIAPKLAPRV
                     LAPRVVPGPAPSLSDHAHPGPSLGSKALGLPPQNYALMQVAGQEGTFSLVALPHVASA
                     QPLQKPRLPLPKNLKLPIPRYQRPGHSKGARKKPGFSSSDRGCSQAPAQTQAAPPLPE
                     HPEAPHKPSPPKPALAPGQAPAPLTSGGGHGDPGLPGTSDRGGRDPPTAPALSTPEEP
                     SAERGLPKSSGRAGVAGKQPSRKPAVARGELREQVDPARAATHLSPGVIGNAVQVVPS
                     IPRGKLPILPYSRTRASQVYKGGAAVNVADVSLPGLRAASDKTSSIPEGFCSAPQVAD
                     RAPAPQASRQSPFDRAYCPATKADLNHKTKPNGGAAKRRGRKRKVPDELLTFQGKRRK
                     CVSNKCKDGKERAKADPQESRDQKPGAVKKYRSIMPKPVLVLPALAPLASPTATLQPP
                     APGSREHASFNHSLAAPKHLGCRQDDGPSPKPGSAFRSGFSGLKKPSHGCHVCEHAFQ
                     PKQHLRERANTHSDSRPYSCRLCRKAYVRPGSLSAHVRLHHGDSRPRRLVCCEFCAKV
                     FGHVRVYFGHLKEVHGVAVSTEPSPCEPQLQPGDLLRTREQTARGMEGPVDRETKSSL
                     EEDLLLNQADEVKFQIRCGRCQITAQSFAEIKFHLLYVHGEEIQGQLQEELSPSPGSR
                     GAQGELVQQAAPFWKHPERRKQLKHRPLDGELCAVPRLKKQLYLRHQNDVEILAKREG
                     AQPGPSEPGGHPQGPEGLGPDAALSPPRPGFRCILCAQTLGRKEELLLHWEERHKCED
                     PLKLWTVLSTLSSQGVIEPSSETGK"
     misc_feature    <758..1765
                     /gene="ZNF438"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2231..2293
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2231..2233,2240..2242,2279..2281,2291..2293)
                     /gene="ZNF438"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2246..2248,2252..2254,2258..2260,2264..2269,
                     2276..2281,2288..2290,2330..2332,2336..2338,2348..2353,
                     2360..2365,2372..2374,2426..2428,2432..2434,2438..2440,
                     2444..2449,2456..2461)
                     /gene="ZNF438"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2315..2377
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2411..2467
                     /gene="ZNF438"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
        1 gggggcgggc ggcggcgacc cgcggcctga cctgcccggg cgccgggtct cgtgacgtca
       61 cctcgccgtg acgcgcacgc ggtaggaaaa ctgattaaat taaaaggatt taccatacat
      121 cttatgactc tttactggag ccttgggagt tagataaaga tgaatgtcat gtctcaacca
      181 acgctgaaaa tgagaagttt agaagacatt tgctaagtca agtcacctca tgctccggac
      241 gcgcaggctc agcggccacg gctcacgggc ccagccgctc cgcggcacgt gggatcctcc
      301 cggactgggg cacgaacccg tgtcccctgc atcggcaggc ggactctcaa ccactgcgcc
      361 accagggaag ctggtatttt gtttcttaca tatgtggaaa ctgaggcttg agacctacct
      421 tcttttctaa tatagatgct ttcagtgctc taaattaccc cctgtgtact gctttaatgg
      481 aatcatacaa attttggcga attgtcgttc aagtcaaaga catcataatg cagagtgctt
      541 catcagtacc accgaaagat caaggaggtg tttcccggct cgccagtcct gttgagaaac
      601 agctgactca gaagaagtcc gcatctcctg gaaagacagc gcgcacagaa agaaatgccc
      661 tttaagggtt tactgctgct gccgtatgat tcacggtcaa gatttgtgcg ctttttcctc
      721 ccaccaaaaa taaatgtcag gagcttcgta cttcttggca agagaaggtg aatcaaacag
      781 ccctcctgga acgattcagg gtgggaaggg tctgcagggt aagagtcagt ttagaaccat
      841 cgctccaaaa cttgcgcccc gagtcctggc gcccagagtg gtcccgggtc cggcgccctc
      901 cctctctgac cacgcgcatc caggcccctc cctcggctcg aaggccctgg ggctgccccc
      961 ccagaattac gcgctgatgc aggtggccgg ccaggaaggg accttctctc tcgtcgctct
     1021 gccacacgtc gcctcggctc agccactcca gaaacccaga ctgcctctgc ccaagaacct
     1081 gaagctgccc atcccccggt accaacgccc aggacatagc aaaggagcca gaaagaaacc
     1141 ggggttcagc tcctccgaca ggggctgtag ccaagctccc gcccaaaccc aagcggcccc
     1201 tcccctgcct gagcatcccg aggccccgca caagcccagc ccacccaagc cggcgctggc
     1261 acccggccag gccccggccc cgctgaccag tgggggtggc catggagacc ctgggctccc
     1321 agggaccagc gaccgcggag gtcgggaccc tcccactgcc ccagcgctgt ccacgccgga
     1381 ggagccctct gccgagcggg gcctcccgaa gagttcaggg agagcaggcg ttgcaggcaa
     1441 gcagccctcc aggaagcctg ctgtcgccag gggagaactt agagaacagg tcgaccctgc
     1501 cagggccgcg acccatttgt cgccaggcgt cattggaaac gcggttcagg tggtcccttc
     1561 catccccaga ggtaaactgc ccatcctgcc ctactcaaga acgagggcgt cgcaagttta
     1621 caaaggcgga gccgctgtga acgttgcaga tgtttctctc cctgggctca gggcagccag
     1681 tgataagacc tcgtccatcc cggagggctt ctgttcggcc ccgcaggtgg ccgacagggc
     1741 acctgcccca caggcgtcga ggcagagccc ctttgacagg gcctactgtc cggccaccaa
     1801 agccgacctc aaccacaaaa caaaaccgaa cggcggggca gccaagagaa gaggaagaaa
     1861 acggaaggtc cccgatgaac ttctgacatt tcagggtaaa aggaggaaat gtgtcagtaa
     1921 taagtgtaaa gatggcaaag aaagagccaa agccgatccc caggaatcca gggaccaaaa
     1981 acctggggct gtgaaaaaat accgtagcat catgcccaaa cctgtcctgg tcctgccggc
     2041 cctggctccc ctggcctcgc ccacggccac gttacagccc ccggcgcccg gcagccggga
     2101 gcacgcgtcg ttcaatcact ccctcgccgc ccccaagcat ctgggctgca ggcaggacga
     2161 cggcccctcc ccgaagcccg gctcggcctt tagaagtggg ttctccggcc tcaagaagcc
     2221 ttcgcacgga tgccacgtgt gcgagcacgc cttccagccc aagcagcacc tccgcgagcg
     2281 cgccaacacg cacagcgaca gccggcccta cagctgccgg ctctgccgca aagcctacgt
     2341 gcggccgggc agcctgagcg cacacgtgcg gctgcatcac ggcgactccc ggcccaggag
     2401 gctcgtgtgc tgcgaattct gcgcgaaggt gttcggccac gtcagagtct acttcggcca
     2461 cctgaaagag gtgcacgggg tggccgtcag caccgagccc tccccctgcg agccgcagct
     2521 gcagccgggg gacttgctga ggaccaggga gcagactgcc cgagggatgg agggaccggt
     2581 ggacagggag accaagtcca gcctggaaga agacctcctt ctaaaccagg ctgatgaggt
     2641 caagttccag atcagatgtg gccgctgtca gatcactgcc cagtcttttg ctgaaatcaa
     2701 gttccacctg ctttacgttc atggagagga aatccagggc cagttgcaag aggagctctc
     2761 accctcccca ggaagcaggg gagctcaggg agaactggtt caacaggctg ctcctttctg
     2821 gaaacatcct gagagaagaa agcagcttaa gcaccgtccc ttggacgggg aactctgtgc
     2881 agtccccaga ctgaaaaagc aactctacct ccgtcatcag aatgatgtgg agatacttgc
     2941 gaaacgtgaa ggagcccagc cgggacccag tgagcccgga ggacaccccc agggccccga
     3001 gggtctcggc cccgacgctg ccctctcccc gccccggcct ggctttcgct gcatcctttg
     3061 tgcacagacg ctgggaagga aggaagagct gctcctgcat tgggaagagc gccacaagtg
     3121 cgaggaccct ctgaaactct ggacggttct cagcacgctc tccagccagg gggtcatcga
     3181 accttccagc gagaccggaa aatgagacag ggagccgggg ggtaagggga ggttttctct
     3241 ccgcttcctc tgttccttgg tggtgcttaa taccaaaaat gaagcaggtt aggatcagcg
     3301 ttaatgagca cagtgagttt tgtacagtct tattttatta tgaaatatat atgtacgggg
     3361 cttgcctggt ggcgcagtgg ttgagagtcc gcctgccgat gcaggggacg cgggttcgtg
     3421 ccccggtctg ggaagatccc acatgccgcg gagcggctgg gcccgtgagc catggccgct
     3481 gagcctgtgc gtccggagcc tgtgctccgc aacgggagag gccacaacag tgagaggccc
     3541 gcgtaccgca aaataaatat atatatatat atacacagac acacacacac acacacacac
     3601 acacacacac acacacacac acacacacat atatatgtac atatgccctt gatgcctatt
     3661 tttctaacat aatgcagttt tattttaaaa ttctatgttc tgttagtatc tgagacttta
     3721 tttcagattc aataaaaaga taaatttgca gattgaaa
//
LOCUS       XR_004347966            5735 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X11, misc_RNA.
ACCESSION   XR_004347966
VERSION     XR_004347966.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5735
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5735
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     misc_RNA        1..5735
                     /gene="ZNF438"
                     /product="zinc finger protein 438, transcript variant X11"
                     /db_xref="GeneID:116747151"
ORIGIN      
        1 gggggcgggc ggcggcgacc cgcggcctga cctgcccggg cgccgggtct cgtgacgtca
       61 cctcgccgtg acgcgcacgc ggtaggaaaa ctgattaaat taaaaggatt taccatacat
      121 cttatgactc tttactggag ccttgggagt tagatattgt tttctataag tggagcatag
      181 ttggatttca tagttggatt tttttaacct aatggcgagg aacctttgcc ttttaacaga
      241 taaagatgaa tgtcatgtct caaccaacgc tgaaaatgag aagtttagaa gacatttgct
      301 aagtcaagtc acctcatgcg aattgtcgtt caagtcaaag acatcataat gcagagtgct
      361 tcatcagtac caccgaaaga tcaaggaggt gtttcccggc tcgccagtcc tgttgagaaa
      421 cagctgactc agaagaagtc cgcatctcct ggaaagacag cgcgcacagg tatttgttct
      481 atgggagtta gagtgtcgaa cgaagtgatt tgctgctttc accttgatgc ggtccagtta
      541 gcaaggcctt ctcggtttca gctgtgtgac tcacctgaac gttcacaatc caagcaatat
      601 taacagcaaa aagaataacg ggaggatggg cctaacaaag catccctctg gctcgctctg
      661 cgttcctcat agatcattag ctcttagtca aattctggcg ctactccgtc attcttagat
      721 ttgggtaaag ataccaagtt gactgctgtg tcatagtgaa taaaatcttg ctcacattac
      781 agggtttttt tgtttttgtt ttttgccaaa atgatgaata acttcatctt tctcaatgca
      841 ttaaaaatga gaatatatca tagttttcaa ctgtctttca tcagaagcac ttgaaattaa
      901 aaatagttcc tcccagaaat gaggactgat acgggggctt aattaaaatg aaggagaaat
      961 tcactgaaat tgagcattgt taaaatgtat tttaaatgta gtgcttttta aattttcatt
     1021 tgggacatta attatatgac ccaaaaagaa taattagcta cttgaattta acaaaaacca
     1081 cattgtgtca tttttttttc ttttattgcc gttagtgttt taggtaactg gcttttaaat
     1141 ttgttcataa agagtgcttg tttccccgtg cttcatgaca tattcacata tctaatttgt
     1201 tcaattttat gggctacaga ccctctttgg atgctagact tttctttcta taaacaagct
     1261 atcttaaact tacttcttaa tgatccccca ccaccaccgc agcatactga aatctacaag
     1321 tgctgtcaaa gttctggttg ccctgaccca ccctctgaga gtccccatat tttctcttcc
     1381 gaattgagaa accccgtggc cattgctctc accgtcctcc tgagatgtgg ccagagtcgc
     1441 tagtcccact ctagaccccg tccctcccag gacccctgag acctgggctg acccccatcc
     1501 cctgaagggc caccagggga gttttgtccc ctgctaagcc ggagaacaac agcagttagc
     1561 atcaatgctc gatataaaca aaagcagagg agggtgtccc cagagaacag ctctttacaa
     1621 tgcacgtatg tgcactcctg ttcactagaa ctgtccatct gattagcact ttgtcaactg
     1681 gatgcagaaa tgggggggcg gggcagggaa aagagagcct gataggctgg atcagatgta
     1741 ataagtgagc tgtcagagag aagtgcttta caggtttatg gggagcatca ttcacaagta
     1801 atagttattt cttcccgctt tccttgattt acctctcaag aaagaaatgc cctttaaggg
     1861 tttactgctg ctgccgtatg attcacggtc aagatttgtg cgctttttcc tcccaccaaa
     1921 aataaatgtc aggagcttcg tacttcttgg caagagaagg taggaaactg ccgagaatct
     1981 aatatgtggt aagcactacc ctggcacgtt taatgcgtac cttcttcatt taatcctgac
     2041 agcgaccaga tacgattatg cccatttcat aaatgggaac attcaggctg agagagtgac
     2101 tctcccagac cacgagacag agacaggagt tgaacccaaa cccgtgatct taccgctaga
     2161 gactgtgatg gtgactgtca ccatgcgtaa tagcttccag gcagcaggta gacctgggaa
     2221 gagcctttgg agtcaggcgg gccaaggctt gagttccagc ctgttacccg ctggctgcaa
     2281 aatcgtcatc tgtaaaatgc acataacagt aattcctgac tcagcgcgtt gtggggatta
     2341 aaggacataa cgcacgcgga gtattttgca cagcacctga cacgtaactt gggaacatgc
     2401 ttgcttcctt cgtacagtgt cagatttcct gaacttgggc tcctagtaga atgactccag
     2461 gcgggctgag tgctgtagat gtgtggacta gagtgatgct tggcatcccg agtccttgga
     2521 aacaaagcac ccgtgtgcct gtgttgccag cacgctttac ggtgccatct ctcccgccag
     2581 cactcagtac agccctgtag atggcgccgc agagccggga catgcgggag aacgggtggg
     2641 cgatggctcc acgtgtttgt aggttttttc aacaaaatta agttgagctc ccttgtgttc
     2701 tgagacgttt cttccatctc agatttctcc ggggttttac catgcttgtt ctaaccagag
     2761 accatcctgg gaaacagttt gaaccccaac tggaacttat tattggaaag ccaagtggga
     2821 gggagaacag ggatgccagc caataaaatt gaacataggg tttttcagtt taataaaatt
     2881 aaaacctaaa caagtcctaa aagttttggc tcttttgtgg ccaagacttg gcaacacttg
     2941 cgctccgagc ctggagccag gggctgcgtc aagagcgggg gacccccttt ctccacctgc
     3001 tctcggctcc ggcttagccg caggccctcc ggtccccaca ggtggaatga ggggcaacca
     3061 tgcccaaacc agccaagggt cgggtgggaa gaactttgtt cacaagcaac actgcaggcc
     3121 ttggttcatg ccggtggaaa tcaggaagtg agctgcttgc agctcttgga cagtcgcctg
     3181 ccccgtgttc ctgactctta acactgtttg cggggccacg ttgtggcaca gtcagatggg
     3241 gctggctcag atgcgggcgc gcggtgtcac tgggccctcg gcttccatcc gccgcctggc
     3301 agggcagccg acgcgcacca gccccgggct ctggaggaga tggaggggga cacacacggt
     3361 gctttctccg gacagatacc tggccgcctt tctgggtttg tcagaaccct gtggatagga
     3421 agtgggaaac tcaactttga atatccgctt ttaccttcag gtgactatta ccttttcgtc
     3481 agttctctaa taagtgggct gttggaaaga atcatttgat ggtaattgaa gtttggagat
     3541 atgacaagcc attgctattt caaatttttt ttcttctcct taaaatccag agataaaaat
     3601 tatattttgg agctaattag ggcaattttg taaagaattt tccccctttt gaggggagga
     3661 tgaaggagag gaaggaaggt cactgctttg cattggaatg ggacggacct gggttgtgtg
     3721 gattttggca tgtaattaac ttcctcaagc ctctctttgc ctcatctgta aaagggaaca
     3781 ataatgttta tttgcagagt ttgcataagg attcaattaa aagaccagca cagattctag
     3841 accataataa ggactcatta cctcctcgtt ttcctttaat ccacagttag atcaaattct
     3901 caccaactgt aaatgtcact cttcaaaata attgttcaat atgcttaaca tactaaaaac
     3961 agtccacatt taaactccta atactacgta tttgcattgt agaactgtgc aaaaattaat
     4021 tttactgagt gaggctttta tgttttcagt ttggaaaagt ccatgtttag tgcctgagag
     4081 tcctgtgggt ctctctgtgt tatgggtaat cccgcaggat ttccagaagt gatgaatgtc
     4141 agtagaaatt tcgacttacc atttagtgca cagttctgtg aaatctgtaa gttagtaggt
     4201 ggcaggtgac ggggtttaga tcacaccatc tgggagaggc cttgtaaatg tgtcatggaa
     4261 taaaccactg ttgcagctac atggccaaga aagacttccc acaatcagac atctcagtgt
     4321 tttaaaaaac ttaatggcat ttgcagtttc tctaaacact cctattgatc aaacctcttt
     4381 aaaaagaaaa aaaaaagaaa acccctgtag ttattataga ataactcacc tttattgcag
     4441 actgccctgt tttattttaa agagccagtg ttgggaggaa cagttctcag gactgcggtt
     4501 gtccttcggg gatgagctct gatgcttctc agggctgaac attggggggt actgataaac
     4561 tgcctgtcag acgattcgat tacttccctt atcattagca attcttatca ttaagtaggc
     4621 aaggaaagta aaaacccgag atgctctcaa ggtgtcatct ggacacagtc atttacgtac
     4681 agatgcacac ttacccatca cagatatccc cacggatacc cctttgcaaa acggatccaa
     4741 aagggaaact ttcattttcc ttttattcat tcaaaaaata ttagtaagta cctcctgtgt
     4801 gccaggccca gagagtgttc agtgggaaat gcacattcat atctcacccc gacctgtact
     4861 tcccccggtg gctccacccc gaaggccaca ctaagaccag tttctttagt ttcctttgag
     4921 agatattctg tgtgtataca ggaatagatt tgtgtgtgtt tctcactgct ttttttttta
     4981 aatcccagtg atagcatgcg ataaacctca catctcggag agtattccat atcagtctaa
     5041 ctcattcttc ttttccactg tggtacagta ttccgttgta tggttggatg agtattgtat
     5101 tagtaccctg ttgctggatg ttttagtaat tcctaggggt tcttttctcc ttctgttttt
     5161 gtggcctcgc cgtctttctc ctgccttgct tttcttctga tgcatcgttt cattccctat
     5221 cactgcatca ttaatgattc tgggaggcgg gactcagcac caccttcgtg aagaccccac
     5281 ccttgcatgt aatccccaac agatccgggc aggcatgagc gagttagttt actgtgcaag
     5341 gccttgtctt cccaccccac aggtttctcg tgactagctt gtggttagtg atcatgaagc
     5401 cagttgatac gctcttctac gccagcaccc acttctttga attgcaggga acttgaggat
     5461 gactctgcgg cgggccccgt acctctcacc cagggccctg tggtctcagg ccaccaggct
     5521 gctcgccgat cagtgttctc tgttgccagg acagctggtt accctaaaga gtttcctgtg
     5581 ctcctggacc acggtcggcc tccttttcct ttgactgcca ttgctctttg tgtgtgattt
     5641 tatttccact gtaatggacg aactcttgaa gatcagttga agcacatcca cttttttttt
     5701 tttttttttt tttggcggta cgcgggcctc tcact
//
LOCUS       XR_004347967            5737 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X12, misc_RNA.
ACCESSION   XR_004347967
VERSION     XR_004347967.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5737
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5737
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747151"
     misc_RNA        1..5737
                     /gene="ZNF438"
                     /product="zinc finger protein 438, transcript variant X12"
                     /db_xref="GeneID:116747151"
ORIGIN      
        1 ggggcgggcg gcggcgaccc gcggcctgac ctgcccgggc gccgggtctc gtgacgtcac
       61 ctcgccgtga cgcgcacgcg gtaggaaaac tagaaagagg atctggtgat atttgtcatg
      121 agtggaactg tgtggaacaa tgtggaaaca caggaacttg aaccatacat acaaaactag
      181 gattaaatta aaaggattta ccatacatct tatgactctt tactggagcc ttgggagtta
      241 gataaagatg aatgtcatgt ctcaaccaac gctgaaaatg agaagtttag aagacatttg
      301 ctaagtcaag tcacctcatg cgaattgtcg ttcaagtcaa agacatcata atgcagagtg
      361 cttcatcagt accaccgaaa gatcaaggag gtgtttcccg gctcgccagt cctgttgaga
      421 aacagctgac tcagaagaag tccgcatctc ctggaaagac agcgcgcaca ggtatttgtt
      481 ctatgggagt tagagtgtcg aacgaagtga tttgctgctt tcaccttgat gcggtccagt
      541 tagcaaggcc ttctcggttt cagctgtgtg actcacctga acgttcacaa tccaagcaat
      601 attaacagca aaaagaataa cgggaggatg ggcctaacaa agcatccctc tggctcgctc
      661 tgcgttcctc atagatcatt agctcttagt caaattctgg cgctactccg tcattcttag
      721 atttgggtaa agataccaag ttgactgctg tgtcatagtg aataaaatct tgctcacatt
      781 acagggtttt tttgtttttg ttttttgcca aaatgatgaa taacttcatc tttctcaatg
      841 cattaaaaat gagaatatat catagttttc aactgtcttt catcagaagc acttgaaatt
      901 aaaaatagtt cctcccagaa atgaggactg atacgggggc ttaattaaaa tgaaggagaa
      961 attcactgaa attgagcatt gttaaaatgt attttaaatg tagtgctttt taaattttca
     1021 tttgggacat taattatatg acccaaaaag aataattagc tacttgaatt taacaaaaac
     1081 cacattgtgt catttttttt tcttttattg ccgttagtgt tttaggtaac tggcttttaa
     1141 atttgttcat aaagagtgct tgtttccccg tgcttcatga catattcaca tatctaattt
     1201 gttcaatttt atgggctaca gaccctcttt ggatgctaga cttttctttc tataaacaag
     1261 ctatcttaaa cttacttctt aatgatcccc caccaccacc gcagcatact gaaatctaca
     1321 agtgctgtca aagttctggt tgccctgacc caccctctga gagtccccat attttctctt
     1381 ccgaattgag aaaccccgtg gccattgctc tcaccgtcct cctgagatgt ggccagagtc
     1441 gctagtccca ctctagaccc cgtccctccc aggacccctg agacctgggc tgacccccat
     1501 cccctgaagg gccaccaggg gagttttgtc ccctgctaag ccggagaaca acagcagtta
     1561 gcatcaatgc tcgatataaa caaaagcaga ggagggtgtc cccagagaac agctctttac
     1621 aatgcacgta tgtgcactcc tgttcactag aactgtccat ctgattagca ctttgtcaac
     1681 tggatgcaga aatggggggg cggggcaggg aaaagagagc ctgataggct ggatcagatg
     1741 taataagtga gctgtcagag agaagtgctt tacaggttta tggggagcat cattcacaag
     1801 taatagttat ttcttcccgc tttccttgat ttacctctca agaaagaaat gccctttaag
     1861 ggtttactgc tgctgccgta tgattcacgg tcaagatttg tgcgcttttt cctcccacca
     1921 aaaataaatg tcaggagctt cgtacttctt ggcaagagaa ggtaggaaac tgccgagaat
     1981 ctaatatgtg gtaagcacta ccctggcacg tttaatgcgt accttcttca tttaatcctg
     2041 acagcgacca gatacgatta tgcccatttc ataaatggga acattcaggc tgagagagtg
     2101 actctcccag accacgagac agagacagga gttgaaccca aacccgtgat cttaccgcta
     2161 gagactgtga tggtgactgt caccatgcgt aatagcttcc aggcagcagg tagacctggg
     2221 aagagccttt ggagtcaggc gggccaaggc ttgagttcca gcctgttacc cgctggctgc
     2281 aaaatcgtca tctgtaaaat gcacataaca gtaattcctg actcagcgcg ttgtggggat
     2341 taaaggacat aacgcacgcg gagtattttg cacagcacct gacacgtaac ttgggaacat
     2401 gcttgcttcc ttcgtacagt gtcagatttc ctgaacttgg gctcctagta gaatgactcc
     2461 aggcgggctg agtgctgtag atgtgtggac tagagtgatg cttggcatcc cgagtccttg
     2521 gaaacaaagc acccgtgtgc ctgtgttgcc agcacgcttt acggtgccat ctctcccgcc
     2581 agcactcagt acagccctgt agatggcgcc gcagagccgg gacatgcggg agaacgggtg
     2641 ggcgatggct ccacgtgttt gtaggttttt tcaacaaaat taagttgagc tcccttgtgt
     2701 tctgagacgt ttcttccatc tcagatttct ccggggtttt accatgcttg ttctaaccag
     2761 agaccatcct gggaaacagt ttgaacccca actggaactt attattggaa agccaagtgg
     2821 gagggagaac agggatgcca gccaataaaa ttgaacatag ggtttttcag tttaataaaa
     2881 ttaaaaccta aacaagtcct aaaagttttg gctcttttgt ggccaagact tggcaacact
     2941 tgcgctccga gcctggagcc aggggctgcg tcaagagcgg gggaccccct ttctccacct
     3001 gctctcggct ccggcttagc cgcaggccct ccggtcccca caggtggaat gaggggcaac
     3061 catgcccaaa ccagccaagg gtcgggtggg aagaactttg ttcacaagca acactgcagg
     3121 ccttggttca tgccggtgga aatcaggaag tgagctgctt gcagctcttg gacagtcgcc
     3181 tgccccgtgt tcctgactct taacactgtt tgcggggcca cgttgtggca cagtcagatg
     3241 gggctggctc agatgcgggc gcgcggtgtc actgggccct cggcttccat ccgccgcctg
     3301 gcagggcagc cgacgcgcac cagccccggg ctctggagga gatggagggg gacacacacg
     3361 gtgctttctc cggacagata cctggccgcc tttctgggtt tgtcagaacc ctgtggatag
     3421 gaagtgggaa actcaacttt gaatatccgc ttttaccttc aggtgactat taccttttcg
     3481 tcagttctct aataagtggg ctgttggaaa gaatcatttg atggtaattg aagtttggag
     3541 atatgacaag ccattgctat ttcaaatttt ttttcttctc cttaaaatcc agagataaaa
     3601 attatatttt ggagctaatt agggcaattt tgtaaagaat tttccccctt ttgaggggag
     3661 gatgaaggag aggaaggaag gtcactgctt tgcattggaa tgggacggac ctgggttgtg
     3721 tggattttgg catgtaatta acttcctcaa gcctctcttt gcctcatctg taaaagggaa
     3781 caataatgtt tatttgcaga gtttgcataa ggattcaatt aaaagaccag cacagattct
     3841 agaccataat aaggactcat tacctcctcg ttttccttta atccacagtt agatcaaatt
     3901 ctcaccaact gtaaatgtca ctcttcaaaa taattgttca atatgcttaa catactaaaa
     3961 acagtccaca tttaaactcc taatactacg tatttgcatt gtagaactgt gcaaaaatta
     4021 attttactga gtgaggcttt tatgttttca gtttggaaaa gtccatgttt agtgcctgag
     4081 agtcctgtgg gtctctctgt gttatgggta atcccgcagg atttccagaa gtgatgaatg
     4141 tcagtagaaa tttcgactta ccatttagtg cacagttctg tgaaatctgt aagttagtag
     4201 gtggcaggtg acggggttta gatcacacca tctgggagag gccttgtaaa tgtgtcatgg
     4261 aataaaccac tgttgcagct acatggccaa gaaagacttc ccacaatcag acatctcagt
     4321 gttttaaaaa acttaatggc atttgcagtt tctctaaaca ctcctattga tcaaacctct
     4381 ttaaaaagaa aaaaaaaaga aaacccctgt agttattata gaataactca cctttattgc
     4441 agactgccct gttttatttt aaagagccag tgttgggagg aacagttctc aggactgcgg
     4501 ttgtccttcg gggatgagct ctgatgcttc tcagggctga acattggggg gtactgataa
     4561 actgcctgtc agacgattcg attacttccc ttatcattag caattcttat cattaagtag
     4621 gcaaggaaag taaaaacccg agatgctctc aaggtgtcat ctggacacag tcatttacgt
     4681 acagatgcac acttacccat cacagatatc cccacggata cccctttgca aaacggatcc
     4741 aaaagggaaa ctttcatttt ccttttattc attcaaaaaa tattagtaag tacctcctgt
     4801 gtgccaggcc cagagagtgt tcagtgggaa atgcacattc atatctcacc ccgacctgta
     4861 cttcccccgg tggctccacc ccgaaggcca cactaagacc agtttcttta gtttcctttg
     4921 agagatattc tgtgtgtata caggaataga tttgtgtgtg tttctcactg cttttttttt
     4981 taaatcccag tgatagcatg cgataaacct cacatctcgg agagtattcc atatcagtct
     5041 aactcattct tcttttccac tgtggtacag tattccgttg tatggttgga tgagtattgt
     5101 attagtaccc tgttgctgga tgttttagta attcctaggg gttcttttct ccttctgttt
     5161 ttgtggcctc gccgtctttc tcctgccttg cttttcttct gatgcatcgt ttcattccct
     5221 atcactgcat cattaatgat tctgggaggc gggactcagc accaccttcg tgaagacccc
     5281 acccttgcat gtaatcccca acagatccgg gcaggcatga gcgagttagt ttactgtgca
     5341 aggccttgtc ttcccacccc acaggtttct cgtgactagc ttgtggttag tgatcatgaa
     5401 gccagttgat acgctcttct acgccagcac ccacttcttt gaattgcagg gaacttgagg
     5461 atgactctgc ggcgggcccc gtacctctca cccagggccc tgtggtctca ggccaccagg
     5521 ctgctcgccg atcagtgttc tctgttgcca ggacagctgg ttaccctaaa gagtttcctg
     5581 tgctcctgga ccacggtcgg cctccttttc ctttgactgc cattgctctt tgtgtgtgat
     5641 tttatttcca ctgtaatgga cgaactcttg aagatcagtt gaagcacatc cacttttttt
     5701 tttttttttt tttttggcgg tacgcgggcc tctcact
//
LOCUS       XR_004347968            5649 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger protein 438 (ZNF438),
            transcript variant X13, misc_RNA.
ACCESSION   XR_004347968
VERSION     XR_004347968.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5649
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5649
                     /gene="ZNF438"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747151"
     misc_RNA        1..5649
                     /gene="ZNF438"
                     /product="zinc finger protein 438, transcript variant X13"
                     /db_xref="GeneID:116747151"
ORIGIN      
        1 gggggcgggc ggcggcgacc cgcggcctga cctgcccggg cgccgggtct cgtgacgtca
       61 cctcgccgtg acgcgcacgc ggtaggaaaa ctgattaaat taaaaggatt taccatacat
      121 cttatgactc tttactggag ccttgggagt tagataaaga tgaatgtcat gtctcaacca
      181 acgctgaaaa tgagaagttt agaagacatt tgctaagtca agtcacctca tgcgaattgt
      241 cgttcaagtc aaagacatca taatgcagag tgcttcatca gtaccaccga aagatcaagg
      301 aggtgtttcc cggctcgcca gtcctgttga gaaacagctg actcagaaga agtccgcatc
      361 tcctggaaag acagcgcgca caggtatttg ttctatggga gttagagtgt cgaacgaagt
      421 gatttgctgc tttcaccttg atgcggtcca gttagcaagg ccttctcggt ttcagctgtg
      481 tgactcacct gaacgttcac aatccaagca atattaacag caaaaagaat aacgggagga
      541 tgggcctaac aaagcatccc tctggctcgc tctgcgttcc tcatagatca ttagctctta
      601 gtcaaattct ggcgctactc cgtcattctt agatttgggt aaagatacca agttgactgc
      661 tgtgtcatag tgaataaaat cttgctcaca ttacagggtt tttttgtttt tgttttttgc
      721 caaaatgatg aataacttca tctttctcaa tgcattaaaa atgagaatat atcatagttt
      781 tcaactgtct ttcatcagaa gcacttgaaa ttaaaaatag ttcctcccag aaatgaggac
      841 tgatacgggg gcttaattaa aatgaaggag aaattcactg aaattgagca ttgttaaaat
      901 gtattttaaa tgtagtgctt tttaaatttt catttgggac attaattata tgacccaaaa
      961 agaataatta gctacttgaa tttaacaaaa accacattgt gtcatttttt tttcttttat
     1021 tgccgttagt gttttaggta actggctttt aaatttgttc ataaagagtg cttgtttccc
     1081 cgtgcttcat gacatattca catatctaat ttgttcaatt ttatgggcta cagaccctct
     1141 ttggatgcta gacttttctt tctataaaca agctatctta aacttacttc ttaatgatcc
     1201 cccaccacca ccgcagcata ctgaaatcta caagtgctgt caaagttctg gttgccctga
     1261 cccaccctct gagagtcccc atattttctc ttccgaattg agaaaccccg tggccattgc
     1321 tctcaccgtc ctcctgagat gtggccagag tcgctagtcc cactctagac cccgtccctc
     1381 ccaggacccc tgagacctgg gctgaccccc atcccctgaa gggccaccag gggagttttg
     1441 tcccctgcta agccggagaa caacagcagt tagcatcaat gctcgatata aacaaaagca
     1501 gaggagggtg tccccagaga acagctcttt acaatgcacg tatgtgcact cctgttcact
     1561 agaactgtcc atctgattag cactttgtca actggatgca gaaatggggg ggcggggcag
     1621 ggaaaagaga gcctgatagg ctggatcaga tgtaataagt gagctgtcag agagaagtgc
     1681 tttacaggtt tatggggagc atcattcaca agtaatagtt atttcttccc gctttccttg
     1741 atttacctct caagaaagaa atgcccttta agggtttact gctgctgccg tatgattcac
     1801 ggtcaagatt tgtgcgcttt ttcctcccac caaaaataaa tgtcaggagc ttcgtacttc
     1861 ttggcaagag aaggtaggaa actgccgaga atctaatatg tggtaagcac taccctggca
     1921 cgtttaatgc gtaccttctt catttaatcc tgacagcgac cagatacgat tatgcccatt
     1981 tcataaatgg gaacattcag gctgagagag tgactctccc agaccacgag acagagacag
     2041 gagttgaacc caaacccgtg atcttaccgc tagagactgt gatggtgact gtcaccatgc
     2101 gtaatagctt ccaggcagca ggtagacctg ggaagagcct ttggagtcag gcgggccaag
     2161 gcttgagttc cagcctgtta cccgctggct gcaaaatcgt catctgtaaa atgcacataa
     2221 cagtaattcc tgactcagcg cgttgtgggg attaaaggac ataacgcacg cggagtattt
     2281 tgcacagcac ctgacacgta acttgggaac atgcttgctt ccttcgtaca gtgtcagatt
     2341 tcctgaactt gggctcctag tagaatgact ccaggcgggc tgagtgctgt agatgtgtgg
     2401 actagagtga tgcttggcat cccgagtcct tggaaacaaa gcacccgtgt gcctgtgttg
     2461 ccagcacgct ttacggtgcc atctctcccg ccagcactca gtacagccct gtagatggcg
     2521 ccgcagagcc gggacatgcg ggagaacggg tgggcgatgg ctccacgtgt ttgtaggttt
     2581 tttcaacaaa attaagttga gctcccttgt gttctgagac gtttcttcca tctcagattt
     2641 ctccggggtt ttaccatgct tgttctaacc agagaccatc ctgggaaaca gtttgaaccc
     2701 caactggaac ttattattgg aaagccaagt gggagggaga acagggatgc cagccaataa
     2761 aattgaacat agggtttttc agtttaataa aattaaaacc taaacaagtc ctaaaagttt
     2821 tggctctttt gtggccaaga cttggcaaca cttgcgctcc gagcctggag ccaggggctg
     2881 cgtcaagagc gggggacccc ctttctccac ctgctctcgg ctccggctta gccgcaggcc
     2941 ctccggtccc cacaggtgga atgaggggca accatgccca aaccagccaa gggtcgggtg
     3001 ggaagaactt tgttcacaag caacactgca ggccttggtt catgccggtg gaaatcagga
     3061 agtgagctgc ttgcagctct tggacagtcg cctgccccgt gttcctgact cttaacactg
     3121 tttgcggggc cacgttgtgg cacagtcaga tggggctggc tcagatgcgg gcgcgcggtg
     3181 tcactgggcc ctcggcttcc atccgccgcc tggcagggca gccgacgcgc accagccccg
     3241 ggctctggag gagatggagg gggacacaca cggtgctttc tccggacaga tacctggccg
     3301 cctttctggg tttgtcagaa ccctgtggat aggaagtggg aaactcaact ttgaatatcc
     3361 gcttttacct tcaggtgact attacctttt cgtcagttct ctaataagtg ggctgttgga
     3421 aagaatcatt tgatggtaat tgaagtttgg agatatgaca agccattgct atttcaaatt
     3481 ttttttcttc tccttaaaat ccagagataa aaattatatt ttggagctaa ttagggcaat
     3541 tttgtaaaga attttccccc ttttgagggg aggatgaagg agaggaagga aggtcactgc
     3601 tttgcattgg aatgggacgg acctgggttg tgtggatttt ggcatgtaat taacttcctc
     3661 aagcctctct ttgcctcatc tgtaaaaggg aacaataatg tttatttgca gagtttgcat
     3721 aaggattcaa ttaaaagacc agcacagatt ctagaccata ataaggactc attacctcct
     3781 cgttttcctt taatccacag ttagatcaaa ttctcaccaa ctgtaaatgt cactcttcaa
     3841 aataattgtt caatatgctt aacatactaa aaacagtcca catttaaact cctaatacta
     3901 cgtatttgca ttgtagaact gtgcaaaaat taattttact gagtgaggct tttatgtttt
     3961 cagtttggaa aagtccatgt ttagtgcctg agagtcctgt gggtctctct gtgttatggg
     4021 taatcccgca ggatttccag aagtgatgaa tgtcagtaga aatttcgact taccatttag
     4081 tgcacagttc tgtgaaatct gtaagttagt aggtggcagg tgacggggtt tagatcacac
     4141 catctgggag aggccttgta aatgtgtcat ggaataaacc actgttgcag ctacatggcc
     4201 aagaaagact tcccacaatc agacatctca gtgttttaaa aaacttaatg gcatttgcag
     4261 tttctctaaa cactcctatt gatcaaacct ctttaaaaag aaaaaaaaaa gaaaacccct
     4321 gtagttatta tagaataact cacctttatt gcagactgcc ctgttttatt ttaaagagcc
     4381 agtgttggga ggaacagttc tcaggactgc ggttgtcctt cggggatgag ctctgatgct
     4441 tctcagggct gaacattggg gggtactgat aaactgcctg tcagacgatt cgattacttc
     4501 ccttatcatt agcaattctt atcattaagt aggcaaggaa agtaaaaacc cgagatgctc
     4561 tcaaggtgtc atctggacac agtcatttac gtacagatgc acacttaccc atcacagata
     4621 tccccacgga tacccctttg caaaacggat ccaaaaggga aactttcatt ttccttttat
     4681 tcattcaaaa aatattagta agtacctcct gtgtgccagg cccagagagt gttcagtggg
     4741 aaatgcacat tcatatctca ccccgacctg tacttccccc ggtggctcca ccccgaaggc
     4801 cacactaaga ccagtttctt tagtttcctt tgagagatat tctgtgtgta tacaggaata
     4861 gatttgtgtg tgtttctcac tgcttttttt tttaaatccc agtgatagca tgcgataaac
     4921 ctcacatctc ggagagtatt ccatatcagt ctaactcatt cttcttttcc actgtggtac
     4981 agtattccgt tgtatggttg gatgagtatt gtattagtac cctgttgctg gatgttttag
     5041 taattcctag gggttctttt ctccttctgt ttttgtggcc tcgccgtctt tctcctgcct
     5101 tgcttttctt ctgatgcatc gtttcattcc ctatcactgc atcattaatg attctgggag
     5161 gcgggactca gcaccacctt cgtgaagacc ccacccttgc atgtaatccc caacagatcc
     5221 gggcaggcat gagcgagtta gtttactgtg caaggccttg tcttcccacc ccacaggttt
     5281 ctcgtgacta gcttgtggtt agtgatcatg aagccagttg atacgctctt ctacgccagc
     5341 acccacttct ttgaattgca gggaacttga ggatgactct gcggcgggcc ccgtacctct
     5401 cacccagggc cctgtggtct caggccacca ggctgctcgc cgatcagtgt tctctgttgc
     5461 caggacagct ggttacccta aagagtttcc tgtgctcctg gaccacggtc ggcctccttt
     5521 tcctttgact gccattgctc tttgtgtgtg attttatttc cactgtaatg gacgaactct
     5581 tgaagatcag ttgaagcaca tccacttttt tttttttttt tttttttggc ggtacgcggg
     5641 cctctcact
//
LOCUS       XR_004347969            5182 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747241
            (LOC116747241), transcript variant X1, ncRNA.
ACCESSION   XR_004347969
VERSION     XR_004347969.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5182
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5182
                     /gene="LOC116747241"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747241"
     ncRNA           1..5182
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747241"
                     /product="uncharacterized LOC116747241, transcript variant
                     X1"
                     /db_xref="GeneID:116747241"
ORIGIN      
        1 acacagaagg cagatgtcac agacccagca tggccccgat ggccctggct tttcccctgt
       61 aatttttttc cgtttgcatc tcttgactta agggttaaaa tggaagttat gcgtttgtag
      121 cccctccccg ccacgatgtt tacaaaaaat gttaatttca tgcgtgtgac tgtggctgaa
      181 attgcatggg atcgacctga ctttgaactt gctgaaccca acaaacactt ctgggtccct
      241 ggatgggaga aaagcaagcc tctctggcgt ctgggtggga ccgtccctcc tggactcacc
      301 tgtgaagtat tcctctgatt gcctacccag ccttgagttc ggtgtgaatt accagctaat
      361 ggcagcattt tacaagctac tttagcttaa acatttggtg ggaagtttat caagttattt
      421 tttacgaaag agctttccaa gagaaaatca gctgtggata ttcagtaata ctaatcaatg
      481 aaatcttaaa aattcaggta agaaattaat cactggcatc ttcgttttat ataaaagacc
      541 agacgtttta ggtggatggt atagtagaag agccatgaat tgacttaggt aaaacactaa
      601 acagagtaac agatgacaga aaagttgcca tgggggggcg ccctctaccc tccgacgggg
      661 gtgacactgc gtgtggacag tgcgtggatg gggcctggtg tcccacagca tgattgaccc
      721 tgagtgcaga agggttttaa ccaggccagg catcccacaa ctcggccgtt aacctcgagg
      781 gtgacaggtt attcggcctc ataatataaa agagaaaaat gatattcact agtttgttga
      841 agcggggagg ggccagatag ggggagtggg ttaaaaggta caaactatta ggtataaagt
      901 ctgccaccag ggtatactgt acaacacggg gagtagaggc caatattcta taataaatat
      961 aaatggagta cagcctttaa aagttgtgaa tcactacatt gtatacctgt aacataatat
     1021 tctacatcaa ctctacttca atttaagaaa gagaaaaatg aaatctcatt catgctggca
     1081 gctgagaaag tactaatctc aaaagtaaag cctcaaaaga gttcaaggaa agcagtcggt
     1141 ttcggggctg tcctgccggc tttatccagg ctgctggcac ccgtggaaag ggaagcgtgt
     1201 atccgggccg cccccccacc cccacccgcc gccgccgcgg cctcacctcg gcagtactgc
     1261 agcaccgtct ccatggcgct cttccggtcc gaggcccagc ggatgcgggc ggagccggtg
     1321 atcttgttct ccacgggcca ccagccctgc cagaggtaca cctcgtggtg attgtcaaca
     1381 aggaaaagtg ctgcgagggc ggagcagagc agacgtctag tcaggggctc tgccccacag
     1441 cgaaccgacg cctccctccc tgccgcctcg gtcagtgcga gaatccgctt ggcaggtaaa
     1501 ctcggggcca cagggagggt gcccccgatg tcttggccct ttgaacggtg aagcaggaga
     1561 tgcctcgagg cagagagatg gcgttgatga ggtgggctct ttcctccctc tccccccatt
     1621 ccttccccct ctgcccctcc tgcagccgcc ctctgggtcc tggccggttg agaagagtgg
     1681 gacagatgac acacgtgacc cccaaggggt tgtcagcgcc gctgatcccc caaaatgcgt
     1741 actgaaagta catcacgctg gcccttgggt catcagtggt catgccccac gtaggactgc
     1801 tttgcaggcg atctaagtcc atggttcttt cagggaggaa tgggctttgg aaatcaagtg
     1861 ttgccccctt ttcccttcag cagaccgtca gcctgactct tccacgtggt caagggctct
     1921 cacacccgcc agcccagccc gcctgagtcc tttcgtagcc tgcatctcag aattctgaaa
     1981 agcccagcgg aggctgcccc acctgagccg caggacggag agaaacatga tggctggagc
     2041 aggggcagcc acatggagac tatgaagcag caagctggag ggaaggctga gagaacagca
     2101 gagactcatg cctgacacag ttgcactcaa cctactctta actgacgaat ttggagaatt
     2161 acattaccgt acagtatgcc tctctctaat tggggaagct gtgtatcagc ctatcatgac
     2221 ggcctggacg ccggctacac cgagagtgtc ttgttccaga ggttcacgct gtgctcagct
     2281 cgcctcctgg aatctccccc ctccttcact tctctccaag ccacacctac acctccaggg
     2341 ctccggggtc caggggcgaa cctgatgggc ctcagtgcca tgtgagacct ggctgaaccc
     2401 tgtctgtcta tcatctagct tgctggctct cagaatgacg acgggagatg aagcatctcg
     2461 cttcacagct gtccacaacg gaaagccaag gactccaggt tgacaattca aaagccaaat
     2521 cacaccttca gagaagctgc tgggggtcct gtgccgttta cggaggcagg atccagttta
     2581 aggtcgagtc atcttgcggc ctcctttatg caaagctgct ttctgaaggc aactccgtgg
     2641 aaggaagggg gagggaggca cccaggaagc tgatttataa ggcagacatc aggaggcctt
     2701 cgctcgtcag gccgcagcta cgtgaagagt tactctaaag cccacgccta taaaaatacc
     2761 ttcccggaga ggagaacaga gtcgaattcc agcagcaaaa gtgactcact ctgtgcgttg
     2821 tcttcctcct cctcccgtct cccggagtgg accaccatcc ctccctggaa acactgcaga
     2881 aaacaggggg gctccttgcc ctgcaggacc tggaccttcc gatttaaaca cattatagtg
     2941 agccacgtgt cctggttttg gggagtcata aaaataacac gtgcctgttg tcgaaaatct
     3001 gaaaaatact gagaagtaca aataaaagcc actgatacta ctgtgattta tcgagaacgc
     3061 tactacagtt ctggcgtgta gctttcctat aatacaaaat atttttcagg tatacatttt
     3121 tcccaaatag gatcgctgtt ttttatgttg ctttatcccc agattttctt cagctgacgt
     3181 ttttctgtca tcacgtaaga ttcttaacgt gaattttgat attttaatgg tcgtgttcca
     3241 cggtacggat ataacgtgat taataattta aacatgtttt taataaagaa aatctctcag
     3301 cagtgagaat gactaatcac tgacttagtg actccgggga aaggaactgt ctcttgcagg
     3361 ctctggtcca ctcacagggc ctgtcactca gcggcgcctc ggtcagcaca acagtcacac
     3421 gtcggcgtga gacgcagcag agtaacagga acgtacgtac tagggccgag tcagctgact
     3481 ctcactttgc caaggtctat ccccttaggc aaggaagtgt ttactgagcc tggcggtcgg
     3541 ggagcgttga aaggtaggac acatttctca ccatgagtta acttatctca gggccccttc
     3601 tgtgtcatta agagccatcc tgtggcagtg ttttctattt ctgcagtgat tttttccatc
     3661 cgttggattg ataaaaaaaa ttaaatgctc caattagatt aagactcaga actctaagga
     3721 tgattttgaa ggcaagataa aacatactcg ttcacagcct ttacgagaaa aagaggggaa
     3781 aaaaagagtt gaaatgatcc actatgagga ataaatgaac aactgtttgt ccctgaaagc
     3841 tatttggaaa atacagtcca tagtggaaca tgtgcattaa acacttttta gggaagagga
     3901 ctggttctta ggaacctgga aggctgagtg agtgtggatc tatttctgga gaaaattcct
     3961 ctgttctctt tcctgatgtt agttttaact attcatccaa gacagtaaaa ggatctgcac
     4021 agggtgttat ggtcccccaa accccagagt taactcttaa ttactggtaa taaaggaagg
     4081 gacaaaacat taaaaagaaa tgcttgcttt caaaaccttg acttggggta gtggtacctg
     4141 ccaggcgtca tgcaggccct ggggttataa cggtgggtaa gaccaggaca gacagagtct
     4201 ctttcatgct cacggggaag acaaagaata aaataagtaa acaaaatgaa tgttgtttta
     4261 cgtaggtgta agtgctatga aaaaatagag cagagcgaag ggacagagaa ggacgggaaa
     4321 atggggaggg atgtggataa aacatggagg cgacattcaa acagaaaccc gaatcgtgta
     4381 aggtttcagg gggagtgttc caggccgggg aatcagtgca aaggccctgg ggtggggggg
     4441 gcggaaagag gtgtgtctag gaactgcaag gaggtgggag tggcctgacc aggcgcaaga
     4501 agagggaggt tggagcgggg tgcagggctg acccccgggg agaccctcgg atggtagtcc
     4561 gagtgtgatg aaggacaagg aggggcacca tctgacgtgt cctagaaaaa tcactcaggc
     4621 tgctgtgagg aacgcagatg gtgggcagac tcgatgttta catcagtccc tgatacctcc
     4681 ttaggatggg tttgtgtaag tggaatcact gatcaaagtg tatgagcatc tcaaggttcc
     4741 taagccgtgg ttgctttcag gatgggtagt ttacactcct cagtggaagc aggcacgggc
     4801 acccatccta ctgaatccct gccagccctg gatctgttct ttaaaaatct ccgccatttg
     4861 aggcgtggaa aatggcatct ctttgtttta gttccttgat gatcagtcca gtggaaactt
     4921 aagaaaaaaa accacccatg ggctctctgc gcttgttttg tggatttact atttgcaggt
     4981 gtactttaag gtcctatggc gagaggtctg ccttcctggt gagggggtgg ggagatgaaa
     5041 gatgaggcag accctgacac ctggagaagc cagaccagga ctaaaggggc tttggacgat
     5101 actgtctttg tgtttagggg accaggccac acaccctccg gctcccggaa aggccagctc
     5161 cctcatttcc ggcgcatctg cc
//
LOCUS       XR_004347970             978 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747241
            (LOC116747241), transcript variant X2, ncRNA.
ACCESSION   XR_004347970
VERSION     XR_004347970.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..978
                     /gene="LOC116747241"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747241"
     ncRNA           1..978
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747241"
                     /product="uncharacterized LOC116747241, transcript variant
                     X2"
                     /db_xref="GeneID:116747241"
ORIGIN      
        1 gtcagcctga ctcttccacg tggtcaaggg ctctcacacc cgccagccca gcccgcctga
       61 gtcctttcgt agcctgcatc tcagaattct gaaaagccca gcggaggctg ccccacctga
      121 gccgcaggac ggagagaaac atgatggctg gagcaggggc agccacatgg agactatgaa
      181 gcagcaagct ggagggaagg ctgagagaac agcagagact catgcctgac acagttgcac
      241 tcaacctact cttaactgac gaatttgggt ccaatacgtg gagatttttc aacaaatata
      301 ttggaaaaat gttttggaga tttgtgacac tgaagaaaac ctgcggacaa accgaatagc
      361 ctagaaatat tgaaaaaagt aagaaaagtt agagaattac attaccgtac agtatgcctc
      421 tctctaattg gggaagctgt gtatcagcct atcatgacgg cctggacgcc ggctacaccg
      481 agagtgtctt gttccagagg ttcacgctgt gctcagctcg cctcctggaa tctcccccct
      541 ccttcacttc tctccaagcc acacctacac ctccagggct ccggggtcca ggggcgaacc
      601 tgatgggcct cagtgccatg tgagacctgg ctgaaccctg tctgtctatc atctagcttg
      661 ctggctctca gaatgacgac gggagatgaa gcatctcgct tcacagctgt ccacaacgga
      721 aagccaagga ctccaggttg acaattcaaa agccaaatca caccttcaga gaagctgctg
      781 ggggtcctgt gccgtttacg gaggcaggat ccagtttaag gtcgagtcat cttgcggcct
      841 cctttatgca aagctgcttt ctgaaggcaa ctccgtggaa ggaaggggga gggaggcacc
      901 caggaagctg atttataagg cagacatcag gaggccttcg ctcgtcaggc cgcagctacg
      961 tgaagagtta ctctaaag
//
LOCUS       XM_032619031             988 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus proteasome 20S subunit alpha 3 (PSMA3),
            mRNA.
ACCESSION   XM_032619031
VERSION     XM_032619031.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..988
                     /gene="PSMA3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 2 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747252"
     CDS             123..890
                     /gene="PSMA3"
                     /codon_start=1
                     /product="proteasome subunit alpha type-3"
                     /protein_id="XP_032474922.1"
                     /db_xref="GeneID:116747252"
                     /translation="MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKD
                     GVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSN
                     FGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYG
                     YWGCAIGKARQAAKTEIEKLQMKEMTCCDVVKEVAKIIYIVHDEVKDKAFELELSWVG
                     EITNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM"
     misc_feature    135..773
                     /gene="PSMA3"
                     /note="The 20S proteasome, multisubunit proteolytic
                     complex, is the central enzyme of nonlysosomal protein
                     degradation in both the cytosol and nucleus. It is
                     composed of 28 subunits arranged as four homoheptameric
                     rings that stack on top of one another forming...; Region:
                     proteasome_alpha_type_3; cd03751"
                     /db_xref="CDD:239720"
     misc_feature    order(150..161,165..170,174..179,189..191,198..200,
                     207..212,219..221,243..245,288..290,294..299,366..374,
                     378..383,474..476,483..485,492..497,504..518,570..572,
                     585..590,594..596,600..605,609..611)
                     /gene="PSMA3"
                     /note="alpha subunit interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239720"
     misc_feature    order(225..227,273..275,279..281,318..320,624..626)
                     /gene="PSMA3"
                     /note="active site"
                     /db_xref="CDD:239720"
ORIGIN      
        1 acagagaagg ctattggtgg aaagaacagc caatgagaga gcctgttact cgtctgcgtg
       61 ctgcagtgta gggggatcgc tttagatcct gcagacctag cgtccccgtg ggttttagcg
      121 cgatgagctc aatcggcacc gggtatgacc tgtcagcctc tacattctct cctgatggaa
      181 gagtttttca agttgagtat gctatgaagg ctgtggaaaa tagtagtaca gctattggaa
      241 tcagatgtaa agatggcgtt gtctttgggg tagaaaaatt agtcctttct aaactttatg
      301 aagaaggttc taacaaacga ctttttaatg ttgatcggca tgtcggaatg gccgtagcgg
      361 gtttgttggc agatgctcgt tctttagcag acattgcgag agaagaggct tccaacttta
      421 gatctaactt tggatataac attccactaa aacatcttgc agacagagtg gccatgtatg
      481 tacatgccta tacactctac agtgctgtta gaccttttgg ctgcagtttc atgttagggt
      541 cttacagtgt gaatgatggt gcacaactct acatgattga cccatcgggt gtttcatatg
      601 gttattgggg ctgtgccatt ggcaaagcca gacaagctgc aaagacagaa atcgaaaagc
      661 ttcagatgaa agaaatgacc tgctgtgatg ttgttaaaga agttgcaaaa ataatttaca
      721 tagtacatga tgaagttaag gataaagctt ttgaactaga gctcagctgg gttggtgaaa
      781 taactaacgg aagacatgaa attgttccaa aagatataag ggaagaggca gagaaatatg
      841 ccaaggaatc tttgaaggaa gaagatgaat cagatgatga taacatgtaa catttacttc
      901 atttacttct atttaactat ttagcccttt ggattaatac acacccactg acaaactttc
      961 attaaatctt tgtcttgtaa caactgaa
//
LOCUS       XR_004347971           11735 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747263
            (LOC116747263), ncRNA.
ACCESSION   XR_004347971
VERSION     XR_004347971.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11735
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..11735
                     /gene="LOC116747263"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747263"
     ncRNA           1..11735
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747263"
                     /product="uncharacterized LOC116747263"
                     /db_xref="GeneID:116747263"
ORIGIN      
        1 gcgccatttt gtctgggcag cggtggctgc aggtctaccg cattttatgt ttctggcgag
       61 acgagagcgg aatctttatc ccgtggattc atttaactgc ggcaaccatc caccgttccc
      121 tccaggacag cacctagtga agatcggaag agtagcgatc tgtcagaaag gtcagttgga
      181 agcggtagtt gtccggtgga ctgggggatg gcgcagctct agcggcaccg gcaccggaag
      241 tgagggggcc gctcggcagc catagcagag taagttctcc ctgcggctgg gtgggaagct
      301 gggggcgggc tgagaggggg cgaggcttct tctctcgcga ccctagagaa agaggcggag
      361 gggacgtgca cgtctctttt ctccgggctg atcctttgga ctcctctcgg gagtgagaga
      421 ggttcgggat gccgctcctc tcagagcagt gcttcctccc tttagaagtg gatttcggca
      481 gcttgtcacg ttctgcgacc aaggccaccg gctgtgtgct cctccttaat taagacaggg
      541 agggcagggt tctgaggcaa accggtcctg cgtggggagg ggtttccgcg tgctggtcac
      601 gcgtttaagc agtgaggaaa atgaaggaaa cgctgggctt ggggtgctga ggaattccct
      661 agctagcaca gacgctgccg ctctagcctt agacaagtag ctgtgccacg ctgcacgagg
      721 cttaggctgc tttttgaaag gagcgagcag tggttttgca gggacggaaa acaccttaga
      781 taaaaataca aggacctccc cgataggatt ttgttcaggg tagccattga tctagttcca
      841 ttagcacgat cttgtgttct gttaaagaaa acaaaaccac atttgaaatg gtggaaatag
      901 agtattgatt ggcaagttgt tttaaagaat gaaataattt taaaaatgta aaatatcgac
      961 ggtaatccac gttgactaaa cttactcgtt aagaggacat gttaactaag gctgcatcga
     1021 tttctcattc gtaacagtga ttttttcaga attgttaaga aaatgaaatg catgttagta
     1081 tttctgctga gtgacctagt cacactgatc tgaatagctg cttaaaatta tcctcataat
     1141 acttctgttt tgaatcctat tgctgtattg gtggggctcc agacaagaaa atgatcgagt
     1201 gatttaatga tttgttgggg tttttttgtc agttggtctg aagaaaagga caggtaagtg
     1261 acaaacatcc ggaagtatta ctgaggtgag ttctaatgtc tgtaaaaatc tttagaatta
     1321 gggagaccag taagtagagc cataaatagc aagatggaag aatggtagtt gaaaagtctt
     1381 tgtttggtca agggttcaga tgagtctgtg attagcttcc tgatatgata ctttagaatg
     1441 aagtctcaaa attaggacat acttacgaat ttgtttaccc attcatgcta gtcccatttc
     1501 tagattttta agtacttaat atttttatca aggaataatg tggacatttt catgattttt
     1561 tactcaatat ttagaaattt ggcatgtaga aaagatattt cagtaagagt ttagaagtta
     1621 agcaattttt tttcttaagg aaattatagg acatgtaaat actacttaac ttcctgggtc
     1681 ggagtgggtg ggtaatcacc tataattcca ctacccgact taaaacggtt attatctgat
     1741 ccaaataatg tatgtcagtg ggcatttgga aattaccaaa aagccaaaag aagaaaacaa
     1801 aatctcttgt atcaccgcca ccaaaaggtg attgcagttt gtactgtacc tatgttattc
     1861 agaggggttt ctcttttgct ggttttgttt tacaaaatag agatcattct agtcatgctc
     1921 attttgtcac tcaggttttt ttcctttttg gaaaatattg ggaacatgct gcacgttttt
     1981 catggctgca tagtgtcctg taggatagat gtactgtatt ttatgtacca gatctcttaa
     2041 tttttataat ggtagtaata tgtctgaata tccttgtgca tgttttacga aagattttct
     2101 ctgagaactg acatctatgc ctaaaatttc taggcatctt gatattccct cacatgcctg
     2161 attatttctc tagaataaat ttctgtaagt ggaaatacaa ggccaaagag attataccat
     2221 gcttcatcag aaagcttttg ctcttacttt ttttgttatc cttcttcctt ttattactct
     2281 cctccccccc aatctccatt ttaaaatttt aatttagctt tatttttgag ctttttctcc
     2341 tggtctctgt ttattcaggt aaaattatca gtctttcaag tcacacatat agtaaaataa
     2401 acttgagaat tttttggacc ttaagagtaa tttcttaaaa ttaatttatt ttttgctcta
     2461 gaatagttag gtgtttgtac agtgaaacat tttgctatgc agaagtgaca cttagaggat
     2521 actaaaaaca aattgttttt tatggtagag ttagttgagt ttaactgttg tttccttgta
     2581 gcctggctta aagttttcca tctttctgtg cgttctcaag gtgcttttgt actgtcatag
     2641 gaccctttac atgtctctct catcacattt actctgcatt tgtttggctc ttccccagtt
     2701 tgagacttta ctcccagagg gtagcaattg ctgttttaat cactcttagg tttccttacc
     2761 tgatacatgg tatgtgctct gtcactgttt cttatgaatc gttatgtact ttcatataca
     2821 aaatatgtga agtaagctaa cttacgtttt ctttaacagc agttctcttc tgaaaattca
     2881 tgatattcca caagtgctgt cttaactttt tttttttttt ttggctgcat tgggtcttcg
     2941 ttgctgcacg caggctttct ctagttgcgg cgagcagggg cgactcttca ttgcagtgcg
     3001 cgggcttctc ttgttgcgga gcgtgggctc taggctcaag ggcttcagta gtggtagcac
     3061 gagggctcca gagcacaggc tcagtagttg tggaacacgg gctcagttgc tccacagcat
     3121 gtgggatccc cccagaccag ggattgaacc cgtgtcccct gccttggcag gcagactctt
     3181 caacaactgc gccaccaggg aagtcccaga actgacttga tttctagttg ctaataataa
     3241 tgtaggttta gagaactcat tgagaatagt tattcttgac ttttattcct caattccttt
     3301 tttttttttt aagattttat gataccttag cggaaggcaa ctatagatga atattaattg
     3361 aacactcaaa tcatctctta ggaataaatg aatgaaaatt aattttgata aaattgattt
     3421 ttgtaaccta ttttaacgag cccaaactag tagaataatg tttctacaaa atcaaaatgg
     3481 tcaaattttt aataacgttt ttatgaaaaa atgctatttt gaaagcagaa tgttttattt
     3541 atttggtcaa gaattcaaat gagggcatga aattagcttc ctgtcatggt atcttagact
     3601 gaaatctcaa aattagaaca tccctatgaa ttttttttta cccattcata tggttcccat
     3661 ttctggattt ttaatcacag aacactgtga acattttcat gatttttttt tttctttaac
     3721 ccacggtaaa atacttgaca taaagatctc atcaggaaaa gtgtttagaa gtgaagcaaa
     3781 acagtctgtt ctgagtgtgt gggctatata acatactgaa aactttaaaa agtctttgtc
     3841 ttctagagga agcctcctcg ctttgtggaa taatgaagga aagtgttcga gtttttaaat
     3901 gacttggatc tgctctctgt tgaaattgta tttctggtat gcagttttac ttaactattc
     3961 tctagtaatc gagattggcc atgttgcctt tacatgtata tctcttttta aaaatgatag
     4021 aatttgttcc actgtacagt tatttctgta actgtctgtg tatgttgaaa agcagaacag
     4081 attgttgtgt tgaatgtagc tgctttccta atggttttgt tattttttgg aaagttacta
     4141 aatttgctta tttgcaacca aagcaacctt tgtaatctct gtatggtctt ttgccctagt
     4201 agatgtcact gcttatttta tggccacatg gagtcataga taactggttt tccttcatat
     4261 ataatgcaaa caagagcatt attttaagat ttggtagatt acctagtggc attcctacta
     4321 ggatctgtcc tcagaagctt actgtcaaaa aaaagaaaac cataattaaa catgtgggtg
     4381 ttaatatagt tatttcaaaa gattccatca gtttagattg gtttaacttt ttaaagatgt
     4441 aaatcatggc acacgagaaa aatagatttg tcaaagttca gtgtacaatt ggatctaatt
     4501 gttttaaaaa acaaattgtt ttataataca gaacagaaag aaatttattt agccatcatt
     4561 aaagactttt caaggttaat gatatgtaat atgtaaaatt agaagaaagg aagtcattct
     4621 aagtggatgt agcttgtgag caaggatgca gttatttggg ttggccaaaa agtttgttcg
     4681 gttagtgaat acattattca ataaaattct tggtgaaaat gaaaaatgtg tcttttatag
     4741 ttacttaaaa ctgaaggaac ttcttggcca acccaatata taagaaaagc tatgtttggg
     4801 acagtaagta aaccagtttg gagaagatga ctgattaaag attacattgg gaaagctgtg
     4861 tgaagccagc ttgtcaaggt ttctagaatt agctgcacat cagaattatg tagagtgctt
     4921 gtcttttata ggtttgggaa cttccagagg gccttgaaag ctgggatatg agcagaaaat
     4981 gaaggttatt ttttgttttg ttttcaaatt ttacaaatca aaatggaatt aaacaaacaa
     5041 aaattaatcc caccctacca ttggattttt aaaattttct ttttccttgt ctgtatgcat
     5101 attctttctt tagtctcaga gaaattttta tttttctttg ttacttaacg ttgtaatagg
     5161 cattcaatgt gactgcatgg tctccacagt aatttttttt tttaatttat ttatttttgg
     5221 ctgcattcgg tcgtcattgc tgtacgcggg ctctctagtt gcggcgagcg ggggctactc
     5281 tgtgttgtgg tgcacgggct tctcattgca gtggcttttc ttgttgcgga gcatgggctc
     5341 taggcacgtg ggcttcagta gttgtggctc acgggctcta gagcgcaggc tccgcagttg
     5401 tggcgcacag gcttagttgc tccacggcat gtgggatctt cccagcccag agcttgaacc
     5461 catgtcccct gcatcggcag gtggattctt aaccactgtg ccaccaggga agtcctccac
     5521 ggtaatttta atgtcagaaa atattccatc aaactctgtt atctctgact ttattttcct
     5581 attgctggac catttaggtt tctttctagt tcttaaatat tgtgctgtaa ttatcatcta
     5641 tgtacataca gtattttctg tttttttgca ctgttatttt aggattgatt taaaaggtca
     5701 ttgtatgaac atttttatga ctctgaaatg ttgccatgtt gttttccaaa agagttataa
     5761 tttacactac cttccctgtg agtttagtta ccaacattgc gtagcctgta attataactt
     5821 ttgctaagtt actaggtaca aaatatgttg agctctcttt ttctctgtaa tatttttgtt
     5881 aacttgtgaa gtgggacctc tttccataat ttcagttact gattcttagt agtaaacaag
     5941 ttgtctattc aagacttttg tccatttata tattacagtt ttgatattcc ttaatttttt
     6001 gagcttatta tataatattt agtagtaatt tgctacagat atttttccat aaagacttcc
     6061 cttttgattt tcgttatttg tgttgagggt ttttgaatag acaaaatgta ttcctgaatg
     6121 attacttgga aatagtgtcc aatatgactg aagaaatgac acaggaattg gaggtgggga
     6181 gacaattaag atactcttgc agtggtgtca gcatgaggtg aaactagagt gagtagggcc
     6241 tggagggagg gtaaggaagg ataggtgagc aagagactgt gagaaaaaaa gagttgatag
     6301 catttgattt ctaattgatt atagaggtaa agaagaaaga aaactcaaga ttttaagaaa
     6361 tgggaagtag attgtgccat taatcaattt ggaaagtcag gaaaggctac tggttggtaa
     6421 ggaaagtgaa atcagtttta aacgtgctag ttagagcttg aaatgtccgg taagcatctg
     6481 ttcttttgtg aaaatgccta taaggtccct gattgggtta aggcatatgc tggactgtat
     6541 actgttttct gtattccaac ttttgtggct gcgcggcatg gcacgtggga tcttagttcc
     6601 ccgaccaggg atcgaaccca ggcccttggc agtgaaagcg tggagtacta accactggac
     6661 tgccagggaa ttccctgtat tctgactttt aattccattc ttccattaga ctttttgggg
     6721 cttttattag ggctctctta tttctggttt taacttgaaa agttaaagtg gattattaag
     6781 taaaataaat gcaggaaaac cagatgattc ctgaactaag ttaaagaaag gttagttttt
     6841 cattcttttt ttcttccagt tttattgagg tattaacata tagtagtgta taagtttgtg
     6901 tacagcgtag tgatttgact taacatcatg aaatgatgac tacagtttag tgaatatcca
     6961 gggaattatt cagagatagc aaagaagata cttaagcttt agaatgtgtg ggtgtggcca
     7021 tgctttttgt ggggatgggt ggtttagggc caatttaatc tctgcctcat ctgtaaaata
     7081 gggatagtaa tagaactgac ctggttagga ttagtattaa atgaattaat atatgtaaag
     7141 tgcttagaat gattccagat attatgtggt ggtgttagta tgcatcgtgc tgtttcataa
     7201 tgtctgtcat tcaagagttt taaagaaatg ttatatttat atacagaaat aaagcaccta
     7261 gactctttgc ctctcccttc ctgaaggtca tattgacctc tctccaaact tatttcatac
     7321 ttcttctctt caggtattac ttgctgcagt cacactaaaa ctatcatggc tccaccgcac
     7381 aagctctgta ttttcccagt tctttgtttt tattcatatt tttcccacca tctggatcgt
     7441 tgccctattg ccacatattc aaaagctgct ttttaagtga tgctttcctt gatacctctg
     7501 caactatagg taatctgtcc gtatgaattt catatatttc cttttatgtg atttctacca
     7561 ctttctgtat tgcattttag ctttttgtcc actaatatgt ccttcactaa gttatgacat
     7621 cttacagaca gagaactgca ccttattcac ttttgtaggt ttagaaccta tcacaggtct
     7681 tggcacttag tacgcactca tttgtggagt gacagtttat aaaaggtata gcaagctaaa
     7741 aggtgacatt taatggacaa atgcatgcca gtgaaaatgt gctttgtcag tttttgtaca
     7801 agaggaacat cttgcctgat gagttgctta aaatgagatc gcttgaggtt taggaattgg
     7861 gtcagattcc agaatgtgta gtgggggtag atcactctgg ggactatcca caggtcagga
     7921 attttcatta gaatgatttc ctattgtttt ataaaggcta gtatgtctaa ttaaccacca
     7981 gagggatttt tcttctgaca gctgattttt cacggatctg cacgcccacc aatcttctca
     8041 tcctcagtgg ttcaaatttg tgaaaagttg ggccagtact aagggtacat ctgccaataa
     8101 cagaatctac aaaccacgtg gctcgattgg ttattgaacc cataatctca ctctgtacgt
     8161 acatttttct tttcacaata ccgtaatgcc tctaggcatg aaaataggag taggctgaaa
     8221 ataggaactg ggtgagacat ttcataagga cacttacttg atctttagtt actgtaggat
     8281 tgacggggtc tgtgcctcta gatttagaag aaatggaaat gttgggaaat ggggagataa
     8341 gttaaaaaat caggcccata gtaggcattt ttagagctaa agcagcatta tgtactctta
     8401 gcttgaaaat tctcagaatt tttacaatag ttcaatggga tgttgatttg agtaagtatc
     8461 ctactgtaga aacactggat ttgaagacca ggtgttctgt gttctgatca taagcctgtt
     8521 ctcattggtt gggatacatt actctacatg agtgtttgct tttaaagtat aagggacatg
     8581 gggctaggta tttacagctc ttaatactta acggttctaa tccagcacca tatttttcta
     8641 ataagaattc ctaagcatat ttctaatatt tatgtatccc tgaaaggtta aatgatactt
     8701 ctgaaaatga gaagtatcag acactgactt gataatttta gcacttaagg aagttgctgc
     8761 tgttatcaaa ttgacagaag ctttaatgtc cttacctacc tcactgtttt atataacaag
     8821 tgttctagta aaacagatat ttgaaataat agctaaggaa ggccgtggat taatttcttt
     8881 atagtgaagt ttctactctg tgtatgtgtg tattgctcat acacaccaca gatgaaagta
     8941 cagtgccctc cagtattttg tcctgtagtt cactttttta aaaaaatctg ttgtgaccca
     9001 cgaattgatt ttatgactta ctgtgggtct gaacctgctt ttgaggggta ggaaaatgga
     9061 ctagataaca gtgctttaca tttgtttggt agtttttaac attccctggg cactttgata
     9121 tactgctgta cccttaagtg tgatagctta aaagcgaaga tacaaactgt tacctgaaaa
     9181 tgcttctagt tgtttcaaca acagttcaat tggggctggg ggtggcagct ggaaggagtc
     9241 atgggggagg gattcttttt tccttagtat gtttgctagt gtgttattga ctctgctaat
     9301 cctaacagcc catttaaggg tgtatattta tatttgtgtt tatttgtagt taggatactg
     9361 tatttatact caaatccttc ggcaagcgta gaccaaagat tttccccaag taggttctct
     9421 caaacgaaac cagaaatctt tgttttgttt tgttttgttt tgaatctttg tgtttcttag
     9481 tttttatata cagtcacaaa actcctttca gtgtttgtat aattttggtg gcttagatct
     9541 tggtctgaca gggtagggag agggattctc acatcaagta ccataacaaa aaaaaaagcc
     9601 atcttcctgt ttcttattcc tctgtgtatc atgtgatata ctgtcttttt aaggccttta
     9661 aattgccaag ggaagcttgg taaccaaggc aagtttttgc tgttttcttc tcaaatttgt
     9721 agttctgcat tttattacac agtcacgaag aacttagtct gttaccagta aatacttaag
     9781 ccgcaagact tgcttctcca tcctgccaag tacttcctgt tttgtcagat ttccatgtag
     9841 ggaaaagaat ggatttagag tagacaagct tgagtttcat gtttaaagca tctcttctga
     9901 aatacttttt ggaagctgtc caaatatcta gattgaggga tgggggtggc acgtcatgtc
     9961 ttcacatgaa gtcatctgtc agaaagtttc atttggcttc atatcatgaa agccagggtt
    10021 gccgacaagg aaggaaaaac atagttgtca gaaataatta ctaatgtatg acttgccaac
    10081 attggtagct tgccttttag actttccctg tcaaacgtgt ttcagtttgt gaatgaatca
    10141 ttgtattgcc tctgaaggaa gtgttgtttt ctgtgttcac ttctagtaga cctttcctct
    10201 agaaatacgt aagaactgca ttcagccaca tttactccat tttcagtagg gacaggtgaa
    10261 aggtcaaatg gtgattagaa tagaaatgga ctgccttgtg aatattgaat atctttgggg
    10321 gaaagtttgc agtaaaatga tgttactctt ttgttagtaa aatagtgagt aaatacaaca
    10381 tttatctaaa aaatgaatta tctgtctctt atttttatcc tatgaaatga acttcgaatt
    10441 aggtgttagt agaacatgtc agtagaagat actttcagtg taaacctgaa tcccttgata
    10501 ctgctggtaa gggaatcttg tgttaaggtt cttttgcagt ggcagaactg agcccttaat
    10561 ataaaatttt ctttggccat attgacctgg cctgtcttaa gtcggagcta tttttctctc
    10621 tcttgacctg tcagtaaaat ataaaagatg ctttttaatc tttgaattca tatgcatttt
    10681 cttctttatc agctccctgg ctctttgtcc actctcatgt tggaaatggt gagagaactg
    10741 atgctgaatc ataagtatga tccattgtag acatctaaat ttttgcattg aatctttact
    10801 atcacttggt tgctgctgac tcttaaacca atcggtctac gaaaggttcc tttgagaatg
    10861 acagaaatga aagcaaaggg atagtcttat cagataagtg cttttttatc tgaatgtatt
    10921 cggtttcttc cataagatgg ctttagtagc gcttagttgt ctttaacttc attcgaaaca
    10981 attttgttag attgtattgt gatagctgtt atatcagcgt acttttttta aaaagcatca
    11041 aaattggtga atttttgtgt agccatttta atattgaaga tggaaggaaa aaaacagcag
    11101 catattatgc tttattcaag aaaggttaaa acacaactga aaaggcaaaa cattcgtgca
    11161 gtgtatggaa aaggtgccgt gactgaacgt gtcaaaagtg gtttgcaaag ttttgtggta
    11221 gagatttctg actggacgat gctccatggt cggggagacc agttcaagtt gatagcaatc
    11281 agatcgagac gtaaatttca gaacaatcaa cgttatacca cgcaggagat aagccgacat
    11341 actcaaaatc tccacatcag gtgttgaaaa tcatttgcac cagcttggtt atgttcatcg
    11401 ctttgatgtt tgggttccac gttaagcgaa agaaaccttg accatatttc tgcactgcga
    11461 ttctctactt acgtaacgaa aacattacgt ttttaaaaac aaattgtgat gggcaatgaa
    11521 aattggatac tgtacaataa tgtggaatag aagagatgtt atggaagaac ccgaatgaac
    11581 ttttttagcc aacccaatat tatctgtaat ctctaaacca aaactttatt ctttaaaacg
    11641 tttgtaattt tctttcctag gtaccagtat cgaggtttac agtaataagg tattcagtct
    11701 ttgctgaaaa taaatgttat cttgtcaaag taaaa
//
LOCUS       XM_032619048             415 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 60S ribosomal protein L30-like
            (LOC116747271), mRNA.
ACCESSION   XM_032619048
VERSION     XM_032619048.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..415
                     /gene="LOC116747271"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 Proteins, and 72% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116747271"
     CDS             1..369
                     /gene="LOC116747271"
                     /codon_start=1
                     /product="60S ribosomal protein L30-like"
                     /protein_id="XP_032474939.1"
                     /db_xref="GeneID:116747271"
                     /translation="MRAFLLPSHLGSCSKKSLELLNSRLQLVMKSGKYVLGYKQTLKM
                     IRQGKVKLVSLANDCPALRKSEIEYYAMLAKTGVHHHTSNNIDLGTACGKYYRVCTLA
                     IIDPGDSVIIRSMPEQTGEK"
     misc_feature    40..342
                     /gene="LOC116747271"
                     /note="60S ribosomal protein L30; Provisional; Region:
                     PTZ00106"
                     /db_xref="CDD:185450"
ORIGIN      
        1 atgagagcct tcttgctccc cagccatctt ggcagctgct cgaaaaagtc actggagttg
       61 ctcaactcta ggctccaact cgttatgaaa agtggaaagt atgtgctggg gtacaagcag
      121 actctgaaaa tgatcagaca aggcaaagtg aaactggtca gccttgccaa cgactgccca
      181 gccttgagga aatctgaaat agagtattat gccatgttgg ccaaaactgg tgtccatcac
      241 cacactagca ataatattga cttgggcaca gcgtgtggaa aatactacag agtatgcaca
      301 ctggctatca ttgatccagg tgattctgtt atcattagaa gcatgccaga acagactggt
      361 gaaaagtaaa tcatgcacaa tttttcttca ataaaactgg ccaaagcttg ttttt
//
LOCUS       XM_032619054            1935 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 2 C10orf67 homolog
            (C2H10orf67), mRNA.
ACCESSION   XM_032619054
VERSION     XM_032619054.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 29% of CDS bases
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1935
                     /gene="C2H10orf67"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 23% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116747277"
     CDS             1..1935
                     /gene="C2H10orf67"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:13..15,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     C10orf67 homolog, mitochondrial"
                     /protein_id="XP_032474945.1"
                     /db_xref="GeneID:116747277"
                     /translation="MGLLXEPKAHYAKGIVIRWMHYFSSSRKMTFSIGRKVRKARAVE
                     LPSNVARRGVLTVIYRSPAPLGTCQRRPGPCAPRTGSREPGGQWKRQRVNSRAVSRPP
                     VAPAPAPPGFRRSAGSPGVAMATDAGSWTRREAPGPAATTAASMESCADAPETEECWK
                     IIENLESTIEQFRFSPRFNISDDLKVGFFSTDHATQTDSSEILPLKELSSSTQKLVQI
                     IKSLQVDFGFLKQLIQLKFEDRLREESCRLFTSLHDRILTIERRYQQNEDTLRKCYNQ
                     QLADAIATIKGMYQQFFEVEEEKTPVHDAVTVKMNILLKKLKEKEELIKELREELDQY
                     EEFGSQEVDSFIKDGSPLRTALEKENLEYKVENERLLQVISELEEEIKLNLKENLVLE
                     DEIISLKEMAEKDHKTIQKLINGRDKLLCELDFEKSLVQEMVNKQKEDLEMRRKFDAI
                     VAKSPRAIKGKETTLSPWPSQPGSARALRPRSSFTVSLLSKAKRVKSPKKASKEEQPT
                     IEEEKRALEEQIQMLKAKLEKEKKKSERVKKEADQINKNWEKKFLILRNSFHVLKDEM
                     FTRHTLFRQFAVLTDTSFNYVKVKPLFMQSKMKLITESTSSANVYHASSVGRLFFPYL
                     TFNQSVLFSLSNETVWFTYR"
     misc_feature    529..858
                     /gene="C2H10orf67"
                     /note="Domain of unknown function (DUF4709); Region:
                     DUF4709; pfam15821"
                     /db_xref="CDD:464894"
     misc_feature    <1066..>1326
                     /gene="C2H10orf67"
                     /note="helix-rich Mycoplasma protein; Region:
                     Mplasa_alph_rch; TIGR04523"
                     /db_xref="CDD:275316"
     misc_feature    1696..>1821
                     /gene="C2H10orf67"
                     /note="Domain of unknown function (DUF4724); Region:
                     DUF4724; pfam15852"
                     /db_xref="CDD:406316"
ORIGIN      
        1 atgggattgc tctgagagcc caaggctcat tatgcaaagg gcatcgttat tagatggatg
       61 cactattttt catcctcccg gaagatgacc tttagcatag ggaggaaggt caggaaagcg
      121 agggccgtcg agcttccatc taatgtcgcg aggagagggg tgctgacggt tatctacagg
      181 agtccagctc ccctggggac atgtcagcgg cggcctggcc cgtgcgcacc gagaacagga
      241 agccgtgagc caggcgggca gtggaagcgg cagcgggtca actcccgggc agtctccagg
      301 ccgcccgtcg cgcccgcgcc cgcgccccca ggattccggc gctctgccgg ttccccggga
      361 gtcgccatgg cgacggacgc cgggtcctgg actcggcggg aggcgcccgg cccagctgcc
      421 accaccgcgg cttcgatgga gagctgtgct gacgcgcctg agaccgagga gtgctggaag
      481 atcatcgaga acctcgagtc cactattgaa caattccggt tcagccccag atttaacatt
      541 tcagatgatt tgaaggttgg ctttttcagc acagaccatg ctactcaaac ggattccagt
      601 gagattttgc cattaaaaga gttgagttca tctacacaga agctagtgca gattattaaa
      661 tctcttcagg tggattttgg gttcctcaaa caattgattc aactgaagtt tgaggaccgt
      721 cttagagagg aatcttgcag actcttcact tctctacatg acaggatcct gacaatcgaa
      781 agacgttacc aacagaatga ggatacctta agaaaatgct acaatcagca gctggccgat
      841 gccatagcta ctatcaaagg aatgtaccag caattctttg aggtggaaga agagaagaca
      901 cctgtgcatg acgcagtgac cgtcaaaatg aatattttgt taaaaaaact gaaggagaaa
      961 gaagaactca ttaaggaatt aagagaagaa ctggaccaat atgaagaatt tggatctcaa
     1021 gaagttgact cttttatcaa agacggcagc cctctaagaa cagctctgga aaaggaaaat
     1081 ttggagtaca aagtggaaaa tgagagactg cttcaagtca tttcagaact tgaagaagaa
     1141 atcaaactca atctaaaaga aaatttagta ttagaagatg aaattataag tctgaaagag
     1201 atggcagaaa aggatcataa aaccattcaa aagctaatca atggcagaga caaattacta
     1261 tgtgagcttg attttgaaaa atcattagtg caagaaatgg ttaataaaca gaaagaggac
     1321 cttgaaatga gaagaaagtt tgatgccata gtcgccaaga gccccagagc catcaagggg
     1381 aaagaaacca ccttgtcccc gtggccctca cagcccggga gtgcacgcgc tctgaggcca
     1441 cgttcttcct tcaccgtttc attgctttct aaggccaaaa gagtcaagag tccaaagaag
     1501 gcttcaaagg aagagcagcc tacgattgaa gaagagaaac gtgctttgga agagcaaata
     1561 caaatgttaa aggctaagtt agagaaagag aaaaagaagt cggagagggt taagaaggaa
     1621 gcagatcaga tcaacaaaaa ctgggaaaag aaattcttaa ttctcaggaa cagctttcac
     1681 gtccttaagg acgagatgtt tactagacac acattgttcc gtcaatttgc agtgctgact
     1741 gacacatcct tcaattatgt taaagttaaa cctttattta tgcaatccaa aatgaaattg
     1801 ataacagagt cgacatcttc tgcaaatgtt tatcatgcat cttcggtagg tagattattt
     1861 tttccctatt taacatttaa tcagtcagta ttattcagcc tcagtaatga aacggtttgg
     1921 tttacctaca gatag
//
LOCUS       XM_032619065            6181 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glucosidase alpha, neutral C (GANC),
            transcript variant X1, mRNA.
ACCESSION   XM_032619065
VERSION     XM_032619065.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6181
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6181
                     /gene="GANC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747282"
     CDS             901..3642
                     /gene="GANC"
                     /codon_start=1
                     /product="neutral alpha-glucosidase C isoform X1"
                     /protein_id="XP_032474956.1"
                     /db_xref="GeneID:116747282"
                     /translation="MDAAEKISVEDEAVDKKIFKDCSKIAFYRRQKQRLSKKSTYRAL
                     LDSVTEGKESTRFQIINEAAKVPLLAEVYGIEGNIFRLKINEETPLKPRYEVPDVLTS
                     KPSTVRLISCSGDTGSLVLANGKGDLKCHITANPFKIDLVSEEEVVMSINSLGQLYFE
                     QLQIPPKQSRATKENEEDTSDDTTQENQEELGLWEEKFRNFVDVKDNGPASIGLDFSL
                     HGFEHVYGIPQHAESHQLKNTSDGDAYRLYNLDVYGYKIHDKMGIYGSVPYLLAHKLG
                     RTLGIFWLNASETLVEINTEPAVKHALTQMGPVAAKEKGRSQTDVHWMSESGIIDVFL
                     LTGPTPSDVFKQYSYLTGTQAMPPLFSLGYHQCRWNYKDEHDVKAVDAGFDEHDIPYD
                     VMWLDIEHTEGKRYFTWNEKRFPNPKRMQELLRSKKRKLVVISDPHIKIDPDYLVYAK
                     AKEQGFFVRNHEGGDFEGVCWPGLSSYLDFTSPKVREWYSSLFAFSVYQGSTDILYIW
                     NDMNEPSVFRGPELTMQKNAIHHGNWEHRELHNIYGFYQQMATAEGLIQRSKGKERPF
                     VLTRSFFAGSQKYGAVWTGDNTAEWSYLKISIPMLLTLSVTGISFCGADVGGFIGNPE
                     AELLVRWYQAGAYQPFFRGHATKNTKRREPWLFGEEHTRLIQEAIRERYTLLPYWYSL
                     FYSAHVASQPVMRPLWVEFPDELETFSVEDEYMLGSALLVHPVTEPKATVVDVFLPGS
                     SEVWYDSKTFARWEGACTVKIPVALDTIPVFQRGGSVVPIKTTIGRSTGCMTDSPYGL
                     RVALSTKGSAVGEFYLDDGHSFQYLHQKQFLHRKFSFASGVLINSCADKRGHYPSKCV
                     VERILVLGLKKQPSSVTSHSPDGKAQPVAFTYCAKTSTLNLEKFSLNIGADWKVQIQ"
     misc_feature    1534..1956
                     /gene="GANC"
                     /note="N-terminal domain of glycosyl hydrolase family 31
                     (GH31); Region: GH31_N; cd14752"
                     /db_xref="CDD:270212"
     misc_feature    1651..1653
                     /gene="GANC"
                     /note="active site"
                     /db_xref="CDD:270212"
     misc_feature    1954..3357
                     /gene="GANC"
                     /note="neutral alpha-glucosidase C, neutral
                     alpha-glucosidase AB; Region: GH31_GANC_GANAB_alpha;
                     cd06603"
                     /db_xref="CDD:269889"
     misc_feature    order(2089..2091,2428..2430,2608..2610,2647..2649,
                     2656..2658,2755..2757,2830..2832)
                     /gene="GANC"
                     /note="putative active site [active]"
                     /db_xref="CDD:269889"
ORIGIN      
        1 agttgtcagg cttggtatga ggctttggac ctactgcgca ggcgtcttcc tgccgtaacc
       61 tggtcacctt ggagtgttag aatgatccac aaaagttacc agccgagtct gttggctctt
      121 ctctctccca gcccttaaag ggtttgggga ccagggaaga accccatgtg gcgtttggct
      181 ctctcctcct ctcgttcgcc ccagtccctc atcgtttgag tcagacgctg gggccaaaag
      241 tctggctgcc tgtttagcgt gtagtagtga gtactcggtt tccggaggta tttaagcaaa
      301 gactggagtt tggcggtggt ggagtataag ccttcctaaa cggaataatg tagtagacaa
      361 ccccttttaa aagacccttc tagtcgtgaa gagtatgatg tagagtttgg tcggagaaca
      421 tcaacctcca gcaacaaccc cgccggcact tcctactcaa aactaaaata caggagagag
      481 tgggtcagtt ttcagtatcc gtggcgtgac agtcactgag gtagatctgc agaagcttct
      541 acctaatcac gcaggccgtg tcggtacttc ctcgttctca cgcccttggt ctgcatcctc
      601 tagggctctt tgagtacacg cctcctcgga tgcaaaaacc ttttcggttt ctaatgaagg
      661 cagttcctca tcagctactc agaaccaaga aaaatttgcc agataaatct ctgtagaaac
      721 cctaatttgg gcctggaaat cccgggagca agtgtcaatt tgtcactcct taaggacatg
      781 aaagtcccag aaacttgatg gtggtgaagt gctggcggtt atttagaaag actgacaatc
      841 taaaagatcg cctggggcct tggcctgaga tctgggagcc tgtgaagtga ctgggaagcc
      901 atggacgcag ctgagaaaat cagtgttgaa gatgaagctg tggataaaaa gattttcaaa
      961 gactgcagca agattgcttt ctacaggcgt cagaaacagc ggctctccaa gaagtctacc
     1021 tatcgggcat tactagactc agtcacagaa ggcaaagaga gcaccaggtt ccaaatcatc
     1081 aacgaagcag ctaaggttcc tctcctggct gaagtttatg gtatagaggg aaatattttc
     1141 aggcttaaaa tcaatgaaga aacacccttg aaacccagat acgaagttcc tgatgtcctc
     1201 acaagcaagc caagcactgt aaggctgatt tcatgctcag gggatacagg cagtctcgta
     1261 ttggcaaatg gaaaaggaga tctgaagtgt cacatcacag caaacccatt caagatagac
     1321 ttggtatctg aagaagaggt tgtgatgagc ataaactccc tgggccaact gtactttgag
     1381 cagctgcaga ttcctcccaa gcaaagcaga gctaccaagg aaaatgagga ggatacatca
     1441 gatgacacca ctcaggaaaa tcaagaggaa ctgggcctgt gggaggagaa attcagaaat
     1501 tttgtggacg tcaaagataa tggtcctgcc tccattggtt tggatttctc cttgcatggg
     1561 tttgagcatg tctatgggat cccacaacat gcagaatcac accaacttaa aaataccagt
     1621 gatggagatg cttaccgtct ttataaccta gatgtctatg gatataaaat acatgacaaa
     1681 atgggcattt atggttcagt gccttatctc ctggcccaca aactgggcag gactctaggc
     1741 attttttggc taaatgcctc agaaacacta gtggagatca atacagaacc tgctgtaaag
     1801 catgcattga cccagatggg cccagttgct gctaaagaaa agggcagatc tcaaactgat
     1861 gtgcactgga tgtcagagag tggaatcatt gatgtttttt tgctgacagg acctacacct
     1921 tctgacgtct tcaagcagta ctcatacctt acaggcacac aagccatgcc ccctctcttc
     1981 tccttggggt accatcagtg ccgctggaac tacaaagatg agcatgatgt aaaggcagtg
     2041 gatgcaggat ttgatgaaca tgacattcct tacgatgtca tgtggctgga catagagcac
     2101 actgaaggca agaggtactt cacctggaac gagaaaaggt tcccaaaccc caaaaggatg
     2161 caagagctgc tcaggagcaa aaaacgtaag cttgtggtca ttagtgaccc ccacatcaag
     2221 attgatcccg actacttagt gtatgctaag gccaaagaac agggcttctt tgtgaggaat
     2281 catgaagggg gagactttga aggtgtatgc tggcctggtc tctcctctta cctggatttt
     2341 accagtccca aagtcagaga gtggtattcc agtctttttg ctttctctgt ttatcaggga
     2401 tctactgaca tcctctacat atggaacgac atgaatgagc cctctgtctt tagagggcca
     2461 gaactaacca tgcagaagaa tgccattcat catggcaact gggagcaccg agaacttcac
     2521 aacatctatg gcttttatca gcaaatggcc actgcagaag gactgatcca gcgatctaaa
     2581 gggaaggaga gaccctttgt tcttacacgt tctttctttg ctggatcaca aaaatatggt
     2641 gctgtgtgga caggtgacaa cacagcagag tggagttacc tgaaaatttc tatccctatg
     2701 ttactcaccc tcagcgtgac tgggatctct ttttgtggag cggatgtagg cggcttcatc
     2761 gggaatccag aggcagagct gctagtgcgg tggtaccagg ctggagccta ccagcccttc
     2821 ttccgtggcc atgccaccaa gaacaccaag cgacgggaac cctggctctt tggggaggag
     2881 cacacccggc tcatccaaga agccatcaga gagcgctaca ccctcctgcc ctactggtat
     2941 tctctgttct actctgcaca cgtggcttcc caacccgtca tgaggcctct gtgggtagag
     3001 ttccctgatg aattagagac tttcagtgtg gaagatgaat acatgctggg aagcgcttta
     3061 ttggttcacc cagtcacaga accaaaagct actgtggttg atgtgtttct gccaggatca
     3121 agtgaggtct ggtatgactc taagacattt gctcgttggg aaggagcatg tactgtaaag
     3181 atcccagtag ccttggacac gataccagtg tttcaacgag gtggaagtgt ggtaccaata
     3241 aagacaacta taggaagatc cacgggctgc atgactgatt ccccatatgg actccgggtg
     3301 gccctaagca ctaagggttc tgctgtgggt gaattctatc tcgatgatgg tcattcattc
     3361 caatacctcc accagaagca attcttgcac aggaagtttt cattcgcctc aggtgttttg
     3421 atcaacagtt gtgctgacaa gaggggtcat tatcccagca agtgtgtggt ggagcggatc
     3481 ttggtcctag gcctcaagaa gcagccatct tctgtgacca gccactcacc tgatggtaaa
     3541 gctcagcctg tggctttcac atattgtgcc aaaacatcca ccctgaacct ggagaagttc
     3601 tcactgaaca ttggtgctga ctggaaggtc caaatccagt gacagagcag tgcacctggt
     3661 gacaagtgat gggaggagct gcacctttct gcctttccgc cggccttttt ttgcgatttg
     3721 tgctgcatgc tattgacttc tctggctcaa agtcatcttt cataagtcac cagtttccta
     3781 acgaacaata gcttccagat ttttcagatg ttacattttt agatgtgcta ataatactct
     3841 ttgtgtcaca cacgccctct cctcctacat gcaagtggcc cagagacatt tatagcgttc
     3901 acagatctcg cattgctcct tgggccatga cctgtggtat gcactctggc ccagtgggca
     3961 gtttctcttt gagcacagct ggatgggttt gttttatgtg agaagtgggc caagcccacc
     4021 caccttgtgg aagcttgtct cagtccatgt ggcagagcca ctcgggctcc agcagctgag
     4081 ctgctcaagg cctatctcca agtggacagc agcttctggt gcccccccac cccagttatc
     4141 ttttacccac ttagacctgg acaagacaac cttttctgct tggagtgtac tcactgcagc
     4201 aacagggagt tactctaccc tagagactga ctcaggaaca caaagggctc ttttccctgt
     4261 catgtttttt ggggtccaaa gttccacatt aatctcctta aaattctaat ttcttgatat
     4321 taattttttt attaaatact gtccactaac caaagcttat ttgtaatatg agtaagctgt
     4381 aatttaaaat aataaaataa ttacccatgt ccccaccctc aaacttcaga aatagaacac
     4441 agggccggga tgagggggag gcaagtaagg cacttgcctg gggcacaaaa tttaagggga
     4501 tgccccaaat cacagtaatc aaaataaata atattttaat gcaatatttt taaaaatcaa
     4561 aattaacagc agggcttccc tggtggagca gtggttgaga gtccgcctgc cgatgcaggg
     4621 gacgtgggtt catgccccgg tctgggaaga tcccacatgc cgcagagcgg ctgggcccgt
     4681 gagccgtggc cgctgagcct gcacgtccag agcctgtgct gtgcaacggg agaggccaca
     4741 acagtgagag gcccacgtac cgcaaaaaaa aaaaaaaaaa agacaaaatt aacagcaaaa
     4801 aaaaaaaatc catgatgaac aaaatatcaa aattttaaat aaggacagga tcgatagtac
     4861 tgcgttttac ttttgcctca gactctagta cagtgtggcg tgggctagaa cactacacca
     4921 tgccagttcc ccaggatgct ccccagggac gccctgcggc cggctgcagc atctgctggg
     4981 gcagtcacat gtcctcagca ctgctcaaca tgcacatttg cttatcaggc ttcttccact
     5041 cagcagcttg ccaactgcca cctctatgcc tctgttccct gggtcccaat atccacggtc
     5101 tgccctccac ctgtgcaaat cctaccatcc atccaggccc aactcaaatc ccatttcccc
     5161 acagagcctt tctaactacc ctaacaccct caactcctct tttctatgag cagtgatttt
     5221 gcccttctct gaaatgctgc cccacttata atatgcattc tgcttagcat tctcagggat
     5281 ggtgcctcag tgtttcaggt ttgtctgtct tgttccctta ctagattgta tgttcttcaa
     5341 gatcatgtta tatttgtctt atatctgcca gagcacgatt atacttggct tttagtaatg
     5401 gttggctgta attggttgac tgatggattt gatttattta aaattgagaa ttgaatgtat
     5461 ttgtttctaa tttactcttc tgacctagaa ctcttccctc cagatatagt aaacattaca
     5521 catttcctca tggacacatt tgattgtatc agttgagatt tgagctttgc accatatata
     5581 agcgcacata gacatatata gattctttgc tcctatttct gtaagttttg caattaagga
     5641 gaaaggaaga agcctccatt agctgaagtc cgatttccca gcttcaagtt tcccttgcca
     5701 agctacagta agacttaaac tgaaaactga atgctcttac ctaatataaa tgatggtttt
     5761 taacagcact taaggctgaa tatttaagac ctatcgtcag ttcaacattt attatgtgtc
     5821 tattattcat ccatttaaaa tatttttgga ggaaggaatg aaataagaac tttagagtag
     5881 gttagtgagg aactgctctg tcttggccca gaactatcct gaaaggttta actagataca
     5941 ttgaatggag agaaatacat cctgggtgtt cttaaatgtt atctgctctt attgcttctc
     6001 acactttacc cccctcctat atctgaagct caggaccaga gagctaagcg gggccgagtt
     6061 ggcctacagt gttgagttac cttgttgcgg ctaattctcg atatgttttc tcaggaaact
     6121 ggattttatg taagaactta gaatcatttt aacaaagatt caaataaagc tctaaaatga
     6181 a
//
LOCUS       XM_032619074            6135 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glucosidase alpha, neutral C (GANC),
            transcript variant X2, mRNA.
ACCESSION   XM_032619074
VERSION     XM_032619074.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6135
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6135
                     /gene="GANC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 10 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747282"
     CDS             858..3596
                     /gene="GANC"
                     /codon_start=1
                     /product="neutral alpha-glucosidase C isoform X2"
                     /protein_id="XP_032474965.1"
                     /db_xref="GeneID:116747282"
                     /translation="MDAAEKISVEDEAVDKKIFKDCSKIAFYRRQKQRLSKKSTYRAL
                     LDSVTEGKESTRFQIINEAAKVPLLAEVYGIEGNIFRLKINEETPLKPRYEVPDVLTS
                     KPSTVRLISCSGDTGSLVLANGKGDLKCHITANPFKIDLVSEEEVVMSINSLGQLYFE
                     QLQIPPKQRATKENEEDTSDDTTQENQEELGLWEEKFRNFVDVKDNGPASIGLDFSLH
                     GFEHVYGIPQHAESHQLKNTSDGDAYRLYNLDVYGYKIHDKMGIYGSVPYLLAHKLGR
                     TLGIFWLNASETLVEINTEPAVKHALTQMGPVAAKEKGRSQTDVHWMSESGIIDVFLL
                     TGPTPSDVFKQYSYLTGTQAMPPLFSLGYHQCRWNYKDEHDVKAVDAGFDEHDIPYDV
                     MWLDIEHTEGKRYFTWNEKRFPNPKRMQELLRSKKRKLVVISDPHIKIDPDYLVYAKA
                     KEQGFFVRNHEGGDFEGVCWPGLSSYLDFTSPKVREWYSSLFAFSVYQGSTDILYIWN
                     DMNEPSVFRGPELTMQKNAIHHGNWEHRELHNIYGFYQQMATAEGLIQRSKGKERPFV
                     LTRSFFAGSQKYGAVWTGDNTAEWSYLKISIPMLLTLSVTGISFCGADVGGFIGNPEA
                     ELLVRWYQAGAYQPFFRGHATKNTKRREPWLFGEEHTRLIQEAIRERYTLLPYWYSLF
                     YSAHVASQPVMRPLWVEFPDELETFSVEDEYMLGSALLVHPVTEPKATVVDVFLPGSS
                     EVWYDSKTFARWEGACTVKIPVALDTIPVFQRGGSVVPIKTTIGRSTGCMTDSPYGLR
                     VALSTKGSAVGEFYLDDGHSFQYLHQKQFLHRKFSFASGVLINSCADKRGHYPSKCVV
                     ERILVLGLKKQPSSVTSHSPDGKAQPVAFTYCAKTSTLNLEKFSLNIGADWKVQIQ"
     misc_feature    1488..1910
                     /gene="GANC"
                     /note="N-terminal domain of glycosyl hydrolase family 31
                     (GH31); Region: GH31_N; cd14752"
                     /db_xref="CDD:270212"
     misc_feature    1605..1607
                     /gene="GANC"
                     /note="active site"
                     /db_xref="CDD:270212"
     misc_feature    1908..3311
                     /gene="GANC"
                     /note="neutral alpha-glucosidase C, neutral
                     alpha-glucosidase AB; Region: GH31_GANC_GANAB_alpha;
                     cd06603"
                     /db_xref="CDD:269889"
     misc_feature    order(2043..2045,2382..2384,2562..2564,2601..2603,
                     2610..2612,2709..2711,2784..2786)
                     /gene="GANC"
                     /note="putative active site [active]"
                     /db_xref="CDD:269889"
ORIGIN      
        1 gtcttcctgc cgtaacctgg tcaccttgga gtgttagaat gatccacaaa agttaccagc
       61 cgagtctgtt ggctcttctc tctcccagcc cttaaagggt ttggggacca gggaagaacc
      121 ccatgtggcg tttggctctc tcctcctctc gttcgcccca gtccctcatc gtttgagtca
      181 gacgctgggg ccaaaagtct ggctgcctgt ttagcgtgta gtagtgagta ctcggtttcc
      241 ggaggtattt aagcaaagac tggagtttgg cggtggtgga gtataagcct tcctaaacgg
      301 aataatgtag tagacaaccc cttttaaaag acccttctag tcgtgaagag tatgatgtag
      361 agtttggtcg gagaacatca acctccagca acaaccccgc cggcacttcc tactcaaaac
      421 taaaatacag gagagagtgg gtcagttttc agtatccgtg gcgtgacagt cactgaggta
      481 gatctgcaga agcttctacc taatcacgca ggccgtgtcg gtacttcctc gttctcacgc
      541 ccttggtctg catcctctag ggctctttga gtacacgcct cctcggatgc aaaaaccttt
      601 tcggtttcta atgaaggcag ttcctcatca gctactcaga accaagaaaa atttgccaga
      661 taaatctctg tagaaaccct aatttgggcc tggaaatccc gggagcaagt gtcaatttgt
      721 cactccttaa ggacatgaaa gtcccagaaa cttgatggtg gtgaagtgct ggcggttatt
      781 tagaaagact gacaatctaa aagatcgcct ggggccttgg cctgagatct gggagcctgt
      841 gaagtgactg ggaagccatg gacgcagctg agaaaatcag tgttgaagat gaagctgtgg
      901 ataaaaagat tttcaaagac tgcagcaaga ttgctttcta caggcgtcag aaacagcggc
      961 tctccaagaa gtctacctat cgggcattac tagactcagt cacagaaggc aaagagagca
     1021 ccaggttcca aatcatcaac gaagcagcta aggttcctct cctggctgaa gtttatggta
     1081 tagagggaaa tattttcagg cttaaaatca atgaagaaac acccttgaaa cccagatacg
     1141 aagttcctga tgtcctcaca agcaagccaa gcactgtaag gctgatttca tgctcagggg
     1201 atacaggcag tctcgtattg gcaaatggaa aaggagatct gaagtgtcac atcacagcaa
     1261 acccattcaa gatagacttg gtatctgaag aagaggttgt gatgagcata aactccctgg
     1321 gccaactgta ctttgagcag ctgcagattc ctcccaagca aagagctacc aaggaaaatg
     1381 aggaggatac atcagatgac accactcagg aaaatcaaga ggaactgggc ctgtgggagg
     1441 agaaattcag aaattttgtg gacgtcaaag ataatggtcc tgcctccatt ggtttggatt
     1501 tctccttgca tgggtttgag catgtctatg ggatcccaca acatgcagaa tcacaccaac
     1561 ttaaaaatac cagtgatgga gatgcttacc gtctttataa cctagatgtc tatggatata
     1621 aaatacatga caaaatgggc atttatggtt cagtgcctta tctcctggcc cacaaactgg
     1681 gcaggactct aggcattttt tggctaaatg cctcagaaac actagtggag atcaatacag
     1741 aacctgctgt aaagcatgca ttgacccaga tgggcccagt tgctgctaaa gaaaagggca
     1801 gatctcaaac tgatgtgcac tggatgtcag agagtggaat cattgatgtt tttttgctga
     1861 caggacctac accttctgac gtcttcaagc agtactcata ccttacaggc acacaagcca
     1921 tgccccctct cttctccttg gggtaccatc agtgccgctg gaactacaaa gatgagcatg
     1981 atgtaaaggc agtggatgca ggatttgatg aacatgacat tccttacgat gtcatgtggc
     2041 tggacataga gcacactgaa ggcaagaggt acttcacctg gaacgagaaa aggttcccaa
     2101 accccaaaag gatgcaagag ctgctcagga gcaaaaaacg taagcttgtg gtcattagtg
     2161 acccccacat caagattgat cccgactact tagtgtatgc taaggccaaa gaacagggct
     2221 tctttgtgag gaatcatgaa gggggagact ttgaaggtgt atgctggcct ggtctctcct
     2281 cttacctgga ttttaccagt cccaaagtca gagagtggta ttccagtctt tttgctttct
     2341 ctgtttatca gggatctact gacatcctct acatatggaa cgacatgaat gagccctctg
     2401 tctttagagg gccagaacta accatgcaga agaatgccat tcatcatggc aactgggagc
     2461 accgagaact tcacaacatc tatggctttt atcagcaaat ggccactgca gaaggactga
     2521 tccagcgatc taaagggaag gagagaccct ttgttcttac acgttctttc tttgctggat
     2581 cacaaaaata tggtgctgtg tggacaggtg acaacacagc agagtggagt tacctgaaaa
     2641 tttctatccc tatgttactc accctcagcg tgactgggat ctctttttgt ggagcggatg
     2701 taggcggctt catcgggaat ccagaggcag agctgctagt gcggtggtac caggctggag
     2761 cctaccagcc cttcttccgt ggccatgcca ccaagaacac caagcgacgg gaaccctggc
     2821 tctttgggga ggagcacacc cggctcatcc aagaagccat cagagagcgc tacaccctcc
     2881 tgccctactg gtattctctg ttctactctg cacacgtggc ttcccaaccc gtcatgaggc
     2941 ctctgtgggt agagttccct gatgaattag agactttcag tgtggaagat gaatacatgc
     3001 tgggaagcgc tttattggtt cacccagtca cagaaccaaa agctactgtg gttgatgtgt
     3061 ttctgccagg atcaagtgag gtctggtatg actctaagac atttgctcgt tgggaaggag
     3121 catgtactgt aaagatccca gtagccttgg acacgatacc agtgtttcaa cgaggtggaa
     3181 gtgtggtacc aataaagaca actataggaa gatccacggg ctgcatgact gattccccat
     3241 atggactccg ggtggcccta agcactaagg gttctgctgt gggtgaattc tatctcgatg
     3301 atggtcattc attccaatac ctccaccaga agcaattctt gcacaggaag ttttcattcg
     3361 cctcaggtgt tttgatcaac agttgtgctg acaagagggg tcattatccc agcaagtgtg
     3421 tggtggagcg gatcttggtc ctaggcctca agaagcagcc atcttctgtg accagccact
     3481 cacctgatgg taaagctcag cctgtggctt tcacatattg tgccaaaaca tccaccctga
     3541 acctggagaa gttctcactg aacattggtg ctgactggaa ggtccaaatc cagtgacaga
     3601 gcagtgcacc tggtgacaag tgatgggagg agctgcacct ttctgccttt ccgccggcct
     3661 ttttttgcga tttgtgctgc atgctattga cttctctggc tcaaagtcat ctttcataag
     3721 tcaccagttt cctaacgaac aatagcttcc agatttttca gatgttacat ttttagatgt
     3781 gctaataata ctctttgtgt cacacacgcc ctctcctcct acatgcaagt ggcccagaga
     3841 catttatagc gttcacagat ctcgcattgc tccttgggcc atgacctgtg gtatgcactc
     3901 tggcccagtg ggcagtttct ctttgagcac agctggatgg gtttgtttta tgtgagaagt
     3961 gggccaagcc cacccacctt gtggaagctt gtctcagtcc atgtggcaga gccactcggg
     4021 ctccagcagc tgagctgctc aaggcctatc tccaagtgga cagcagcttc tggtgccccc
     4081 ccaccccagt tatcttttac ccacttagac ctggacaaga caaccttttc tgcttggagt
     4141 gtactcactg cagcaacagg gagttactct accctagaga ctgactcagg aacacaaagg
     4201 gctcttttcc ctgtcatgtt ttttggggtc caaagttcca cattaatctc cttaaaattc
     4261 taatttcttg atattaattt ttttattaaa tactgtccac taaccaaagc ttatttgtaa
     4321 tatgagtaag ctgtaattta aaataataaa ataattaccc atgtccccac cctcaaactt
     4381 cagaaataga acacagggcc gggatgaggg ggaggcaagt aaggcacttg cctggggcac
     4441 aaaatttaag gggatgcccc aaatcacagt aatcaaaata aataatattt taatgcaata
     4501 tttttaaaaa tcaaaattaa cagcagggct tccctggtgg agcagtggtt gagagtccgc
     4561 ctgccgatgc aggggacgtg ggttcatgcc ccggtctggg aagatcccac atgccgcaga
     4621 gcggctgggc ccgtgagccg tggccgctga gcctgcacgt ccagagcctg tgctgtgcaa
     4681 cgggagaggc cacaacagtg agaggcccac gtaccgcaaa aaaaaaaaaa aaaaagacaa
     4741 aattaacagc aaaaaaaaaa aatccatgat gaacaaaata tcaaaatttt aaataaggac
     4801 aggatcgata gtactgcgtt ttacttttgc ctcagactct agtacagtgt ggcgtgggct
     4861 agaacactac accatgccag ttccccagga tgctccccag ggacgccctg cggccggctg
     4921 cagcatctgc tggggcagtc acatgtcctc agcactgctc aacatgcaca tttgcttatc
     4981 aggcttcttc cactcagcag cttgccaact gccacctcta tgcctctgtt ccctgggtcc
     5041 caatatccac ggtctgccct ccacctgtgc aaatcctacc atccatccag gcccaactca
     5101 aatcccattt ccccacagag cctttctaac taccctaaca ccctcaactc ctcttttcta
     5161 tgagcagtga ttttgccctt ctctgaaatg ctgccccact tataatatgc attctgctta
     5221 gcattctcag ggatggtgcc tcagtgtttc aggtttgtct gtcttgttcc cttactagat
     5281 tgtatgttct tcaagatcat gttatatttg tcttatatct gccagagcac gattatactt
     5341 ggcttttagt aatggttggc tgtaattggt tgactgatgg atttgattta tttaaaattg
     5401 agaattgaat gtatttgttt ctaatttact cttctgacct agaactcttc cctccagata
     5461 tagtaaacat tacacatttc ctcatggaca catttgattg tatcagttga gatttgagct
     5521 ttgcaccata tataagcgca catagacata tatagattct ttgctcctat ttctgtaagt
     5581 tttgcaatta aggagaaagg aagaagcctc cattagctga agtccgattt cccagcttca
     5641 agtttccctt gccaagctac agtaagactt aaactgaaaa ctgaatgctc ttacctaata
     5701 taaatgatgg tttttaacag cacttaaggc tgaatattta agacctatcg tcagttcaac
     5761 atttattatg tgtctattat tcatccattt aaaatatttt tggaggaagg aatgaaataa
     5821 gaactttaga gtaggttagt gaggaactgc tctgtcttgg cccagaacta tcctgaaagg
     5881 tttaactaga tacattgaat ggagagaaat acatcctggg tgttcttaaa tgttatctgc
     5941 tcttattgct tctcacactt tacccccctc ctatatctga agctcaggac cagagagcta
     6001 agcggggccg agttggccta cagtgttgag ttaccttgtt gcggctaatt ctcgatatgt
     6061 tttctcagga aactggattt tatgtaagaa cttagaatca ttttaacaaa gattcaaata
     6121 aagctctaaa atgaa
//
LOCUS       XM_032619083            3583 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glucosidase alpha, neutral C (GANC),
            transcript variant X3, mRNA.
ACCESSION   XM_032619083
VERSION     XM_032619083.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3583
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3583
                     /gene="GANC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747282"
     CDS             858..3545
                     /gene="GANC"
                     /codon_start=1
                     /product="neutral alpha-glucosidase C isoform X3"
                     /protein_id="XP_032474974.1"
                     /db_xref="GeneID:116747282"
                     /translation="MDAAEKISVEDEAVDKKIFKDCSKIAFYRRQKQRLSKKSTYRAL
                     LDSVTEGKESTRFQIINEAAKVPLLAEVYGIEGNIFRLKINEETPLKPRYEVPDVLTS
                     KPSTVRLISCSGDTGSLVLANGKGDLKCHITANPFKIDLVSEEEVVMSINSLGQLYFE
                     QLQIPPKQSRATKENEEDTSDDTTQENQEELGLWEEKFRNFVDVKDNGPASIGLDFSL
                     HGFEHVYGIPQHAESHQLKNTSDGDAYRLYNLDVYGYKIHDKMGIYGSVPYLLAHKLG
                     RTLGIFWLNASETLVEINTEPAVKHALTQMGPVAAKEKGRSQTDVHWMSESGIIDVFL
                     LTGPTPSDVFKQYSYLTGTQAMPPLFSLGYHQCRWNYKDEHDVKAVDAGFDEHDIPYD
                     VMWLDIEHTEGKRYFTWNEKRFPNPKRMQELLRSKKRKLVVISDPHIKIDPDYLVYAK
                     AKEQGFFVRNHEGGDFEGVCWPGLSSYLDFTSPKVREWYSSLFAFSVYQGSTDILYIW
                     NDMNEPSVFRGPELTMQKNAIHHGNWEHRELHNIYGFYQQMATAEGLIQRSKGKERPF
                     VLTRSFFAGSQKYGAVWTGDNTAEWSYLKISIPMLLTLSVTGISFCGADVGGFIGNPE
                     AELLVRWYQAGAYQPFFRGHATKNTKRREPWLFGEEHTRLIQEAIRERYTLLPYWYSL
                     FYSAHVASQPVMRPLWVEFPDELETFSVEDEYMLGSALLVHPVTEPKATVVDVFLPGS
                     SEVWYDSKTFARWEGACTVKIPVALDTIPVFQRGGSVVPIKTTIGRSTGCMTDSPYGL
                     RVALSTKGSAVGEFYLDDGHSFQYLHQKQFLHRKFSFASGVLINSCADKRGHYPSKCV
                     VERILVLGLKKQPSSVTSHSPGLNHPADPGYSGPGVVSS"
     misc_feature    1491..1913
                     /gene="GANC"
                     /note="N-terminal domain of glycosyl hydrolase family 31
                     (GH31); Region: GH31_N; cd14752"
                     /db_xref="CDD:270212"
     misc_feature    1608..1610
                     /gene="GANC"
                     /note="active site"
                     /db_xref="CDD:270212"
     misc_feature    1911..3314
                     /gene="GANC"
                     /note="neutral alpha-glucosidase C, neutral
                     alpha-glucosidase AB; Region: GH31_GANC_GANAB_alpha;
                     cd06603"
                     /db_xref="CDD:269889"
     misc_feature    order(2046..2048,2385..2387,2565..2567,2604..2606,
                     2613..2615,2712..2714,2787..2789)
                     /gene="GANC"
                     /note="putative active site [active]"
                     /db_xref="CDD:269889"
ORIGIN      
        1 gtcttcctgc cgtaacctgg tcaccttgga gtgttagaat gatccacaaa agttaccagc
       61 cgagtctgtt ggctcttctc tctcccagcc cttaaagggt ttggggacca gggaagaacc
      121 ccatgtggcg tttggctctc tcctcctctc gttcgcccca gtccctcatc gtttgagtca
      181 gacgctgggg ccaaaagtct ggctgcctgt ttagcgtgta gtagtgagta ctcggtttcc
      241 ggaggtattt aagcaaagac tggagtttgg cggtggtgga gtataagcct tcctaaacgg
      301 aataatgtag tagacaaccc cttttaaaag acccttctag tcgtgaagag tatgatgtag
      361 agtttggtcg gagaacatca acctccagca acaaccccgc cggcacttcc tactcaaaac
      421 taaaatacag gagagagtgg gtcagttttc agtatccgtg gcgtgacagt cactgaggta
      481 gatctgcaga agcttctacc taatcacgca ggccgtgtcg gtacttcctc gttctcacgc
      541 ccttggtctg catcctctag ggctctttga gtacacgcct cctcggatgc aaaaaccttt
      601 tcggtttcta atgaaggcag ttcctcatca gctactcaga accaagaaaa atttgccaga
      661 taaatctctg tagaaaccct aatttgggcc tggaaatccc gggagcaagt gtcaatttgt
      721 cactccttaa ggacatgaaa gtcccagaaa cttgatggtg gtgaagtgct ggcggttatt
      781 tagaaagact gacaatctaa aagatcgcct ggggccttgg cctgagatct gggagcctgt
      841 gaagtgactg ggaagccatg gacgcagctg agaaaatcag tgttgaagat gaagctgtgg
      901 ataaaaagat tttcaaagac tgcagcaaga ttgctttcta caggcgtcag aaacagcggc
      961 tctccaagaa gtctacctat cgggcattac tagactcagt cacagaaggc aaagagagca
     1021 ccaggttcca aatcatcaac gaagcagcta aggttcctct cctggctgaa gtttatggta
     1081 tagagggaaa tattttcagg cttaaaatca atgaagaaac acccttgaaa cccagatacg
     1141 aagttcctga tgtcctcaca agcaagccaa gcactgtaag gctgatttca tgctcagggg
     1201 atacaggcag tctcgtattg gcaaatggaa aaggagatct gaagtgtcac atcacagcaa
     1261 acccattcaa gatagacttg gtatctgaag aagaggttgt gatgagcata aactccctgg
     1321 gccaactgta ctttgagcag ctgcagattc ctcccaagca aagcagagct accaaggaaa
     1381 atgaggagga tacatcagat gacaccactc aggaaaatca agaggaactg ggcctgtggg
     1441 aggagaaatt cagaaatttt gtggacgtca aagataatgg tcctgcctcc attggtttgg
     1501 atttctcctt gcatgggttt gagcatgtct atgggatccc acaacatgca gaatcacacc
     1561 aacttaaaaa taccagtgat ggagatgctt accgtcttta taacctagat gtctatggat
     1621 ataaaataca tgacaaaatg ggcatttatg gttcagtgcc ttatctcctg gcccacaaac
     1681 tgggcaggac tctaggcatt ttttggctaa atgcctcaga aacactagtg gagatcaata
     1741 cagaacctgc tgtaaagcat gcattgaccc agatgggccc agttgctgct aaagaaaagg
     1801 gcagatctca aactgatgtg cactggatgt cagagagtgg aatcattgat gtttttttgc
     1861 tgacaggacc tacaccttct gacgtcttca agcagtactc ataccttaca ggcacacaag
     1921 ccatgccccc tctcttctcc ttggggtacc atcagtgccg ctggaactac aaagatgagc
     1981 atgatgtaaa ggcagtggat gcaggatttg atgaacatga cattccttac gatgtcatgt
     2041 ggctggacat agagcacact gaaggcaaga ggtacttcac ctggaacgag aaaaggttcc
     2101 caaaccccaa aaggatgcaa gagctgctca ggagcaaaaa acgtaagctt gtggtcatta
     2161 gtgaccccca catcaagatt gatcccgact acttagtgta tgctaaggcc aaagaacagg
     2221 gcttctttgt gaggaatcat gaagggggag actttgaagg tgtatgctgg cctggtctct
     2281 cctcttacct ggattttacc agtcccaaag tcagagagtg gtattccagt ctttttgctt
     2341 tctctgttta tcagggatct actgacatcc tctacatatg gaacgacatg aatgagccct
     2401 ctgtctttag agggccagaa ctaaccatgc agaagaatgc cattcatcat ggcaactggg
     2461 agcaccgaga acttcacaac atctatggct tttatcagca aatggccact gcagaaggac
     2521 tgatccagcg atctaaaggg aaggagagac cctttgttct tacacgttct ttctttgctg
     2581 gatcacaaaa atatggtgct gtgtggacag gtgacaacac agcagagtgg agttacctga
     2641 aaatttctat ccctatgtta ctcaccctca gcgtgactgg gatctctttt tgtggagcgg
     2701 atgtaggcgg cttcatcggg aatccagagg cagagctgct agtgcggtgg taccaggctg
     2761 gagcctacca gcccttcttc cgtggccatg ccaccaagaa caccaagcga cgggaaccct
     2821 ggctctttgg ggaggagcac acccggctca tccaagaagc catcagagag cgctacaccc
     2881 tcctgcccta ctggtattct ctgttctact ctgcacacgt ggcttcccaa cccgtcatga
     2941 ggcctctgtg ggtagagttc cctgatgaat tagagacttt cagtgtggaa gatgaataca
     3001 tgctgggaag cgctttattg gttcacccag tcacagaacc aaaagctact gtggttgatg
     3061 tgtttctgcc aggatcaagt gaggtctggt atgactctaa gacatttgct cgttgggaag
     3121 gagcatgtac tgtaaagatc ccagtagcct tggacacgat accagtgttt caacgaggtg
     3181 gaagtgtggt accaataaag acaactatag gaagatccac gggctgcatg actgattccc
     3241 catatggact ccgggtggcc ctaagcacta agggttctgc tgtgggtgaa ttctatctcg
     3301 atgatggtca ttcattccaa tacctccacc agaagcaatt cttgcacagg aagttttcat
     3361 tcgcctcagg tgttttgatc aacagttgtg ctgacaagag gggtcattat cccagcaagt
     3421 gtgtggtgga gcggatcttg gtcctaggcc tcaagaagca gccatcttct gtgaccagcc
     3481 actcacctgg tctaaatcat cctgcggatc ctggctatag tggacctggg gtggtcagtt
     3541 cctgacagac gtgatcccag gatgtagatt ccagtttgac cag
//
LOCUS       XR_004347977            3419 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glucosidase alpha, neutral C (GANC),
            transcript variant X4, misc_RNA.
ACCESSION   XR_004347977
VERSION     XR_004347977.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3419
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3419
                     /gene="GANC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747282"
     misc_RNA        1..3419
                     /gene="GANC"
                     /product="glucosidase alpha, neutral C, transcript variant
                     X4"
                     /db_xref="GeneID:116747282"
ORIGIN      
        1 gtcttcctgc cgtaacctgg tcaccttgga gtgttagaat gatccacaaa agttaccagc
       61 cgagtctgtt ggctcttctc tctcccagcc cttaaagggt ttggggacca gggaagaacc
      121 ccatgtggcg tttggctctc tcctcctctc gttcgcccca gtccctcatc gtttgagtca
      181 gacgctgggg ccaaaagtct ggctgcctgt ttagcgtgta gtagtgagta ctcggtttcc
      241 ggaggtattt aagcaaagac tggagtttgg cggtggtgga gtataagcct tcctaaacgg
      301 aataatgtag tagacaaccc cttttaaaag acccttctag tcgtgaagag tatgatgtag
      361 agtttggtcg gagaacatca acctccagca acaaccccgc cggcacttcc tactcaaaac
      421 taaaatacag gagagagtgg gtcagttttc agtatccgtg gcgtgacagt cactgaggta
      481 gatctgcaga agcttctacc taatcacgca ggccgtgtcg gtacttcctc gttctcacgc
      541 ccttggtctg catcctctag ggctctttga gtacacgcct cctcggatgc aaaaaccttt
      601 tcggtttcta atgaaggcag ttcctcatca gctactcaga accaagaaaa atttgccaga
      661 taaatctctg tagaaaccct aatttgggcc tggaaatccc gggagcaagt gtcaatttgt
      721 cactccttaa ggacatgaaa gtcccagaaa cttgatggtg gtgaagtgct ggcggttatt
      781 tagaaagact gacaatctaa aagatcgcct ggggccttgg cctgagatct gggagcctgt
      841 gaagtgactg ggaagccatg gacgcagctg agaaaatcag tgttgaagat gaagctgtgg
      901 ataaaaagat tttcaaagac tgcagcaaga ttgctttcta caggcgtcag aaacagcggc
      961 tctccaagaa gtctacctat cgggcattac tagactcagt cacagaaggc aaagagagca
     1021 ccaggttcca aatcatcaac gaagcagcta aggttcctct cctggctgaa gtttatggta
     1081 tagagggaaa tattttcagg cttaaaatca atgaagaaac acccttgaaa cccagatacg
     1141 aagttcctga tgtcctcaca agcaagccaa gcactgtaag gctgatttca tgctcagggg
     1201 atacaggcag tctcgtattg gcaaatggaa aaggagatct gaagtgtcac atcacagcaa
     1261 acccattcaa gatagacttg gtatctgaag aagaggttgt gatgagcata aactccctgg
     1321 gccaactgta ctttgagcag ctgcagattc ctcccaagca aagcagagct accaaggaaa
     1381 atgaggagga tacatcagat gacaccactc aggaaaatca agaggaactg ggcctgtggg
     1441 aggagaaatt cagaaatttt gtggacgtca aagataatgg tcctgcctcc attggtttgg
     1501 atttctcctt gcatgggttt gagcatgtct atgggatccc acaacatgca gaatcacacc
     1561 aacttaaaaa taccagtgat ggagatgctt accgtcttta taacctagat gtctatggat
     1621 ataaaataca tgacaaaatg ggcatttatg gttcagtgcc ttatctcctg gcccacaaac
     1681 tgggcaggac tctaggcatt ttttggctaa atgcctcaga aacactagtg gagatcaata
     1741 cagaacctgc tgtaaagcat gcattgaccc agatgggccc agttgctgct aaagaaaagg
     1801 gcagatctca aactgatgtg cactggatgt cagagagtgg aatcattgat gtttttttgc
     1861 tgacaggacc tacaccttct gacgtcttca agcagtactc ataccttaca ggcacacaag
     1921 ccatgccccc tctcttctcc ttggggtacc atcagtgccg ctggaactac aaagatgagc
     1981 atgatgtaaa ggcagtggat gcaggatttg atgaacatga cattccttac gatgtcatgt
     2041 ggctggacat agagcacact gaaggcaaga ggtacttcac ctggaacgag aaaaggttcc
     2101 caaaccccaa aaggatgcaa gagctgctca ggagcaaaaa acgtaagctt gtggtcatta
     2161 gtgaccccca catcaagatt gatcccgact acttagtgta tgctaaggcc aaagaacagg
     2221 gcttctttgt gaggaatcat gaagggggag actttgaagg tgtatgctgg cctggtctct
     2281 cctcttacct ggattttacc agtcccaaag tcagagagtg gtattccagt ctttttgctt
     2341 tctctgttta tcagggatct actgacatcc tctacatatg gaacgacatg aatgagccct
     2401 ctgtctttag agggccagaa ctaaccatgc agaagaatgc cattcatcat ggcaactggg
     2461 agcaccgaga acttcacaac atctatggct tttatcagca aatggccact gcagaaggac
     2521 tgatccagcg atctaaaggg aaggagagac cctttgttct tacacgttct ttctttgctg
     2581 gatcacaaaa atatggtgct gtgtggacag gtgacaacac agcagagtgg agttacctga
     2641 aaatttctat ccctatgtta ctcaccctca gcgtgactgg gatctctttt tgtggagcgg
     2701 atgtaggcgg cttcatcggg aatccagagg cagagctgct agtgcggtgg taccaggctg
     2761 gagcctacca gcccttcttc cgtggccatg ccaccaagaa caccaagcga cgggaaccct
     2821 ggctctttgg ggaggagcac acccggctca tccaagaagc catcagagag cgctacaccc
     2881 tcctgcccta ctggtattct ctgttctact ctgcacacgt ggcttcccaa cccgtcatga
     2941 ggcctctgtg ggtagagttc cctgatgaat tagagacttt cagtgtggaa gatgaataca
     3001 tgctgggaag cgctttattg gttcacccag tcacagaacc aaaagctact gtggttgatg
     3061 tgtttctgcc aggatcaagt gaggtctggt atgactctaa gacatttgct cgttgggaag
     3121 gagcatgtac tgtaaagatc ccagtagcct tggacacgat accagtgttt caacgaggtg
     3181 gaagtgtggt accaataaag acaactatag gaagatccac gggctgcatg actgattccc
     3241 catatggact ccgggtggcc ctaagcacta agttgtgctg acaagagggg tcattatccc
     3301 agcaagtgtg tggtggagcg gatcttggtc ctaggcctca agaagcagcc atcttctgtg
     3361 accagccact cacctgatgg taaagctcag cctgtggctt tcacatattg tgccaaaac
//
LOCUS       XR_004347978            3394 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glucosidase alpha, neutral C (GANC),
            transcript variant X5, misc_RNA.
ACCESSION   XR_004347978
VERSION     XR_004347978.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3394
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3394
                     /gene="GANC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747282"
     misc_RNA        1..3394
                     /gene="GANC"
                     /product="glucosidase alpha, neutral C, transcript variant
                     X5"
                     /db_xref="GeneID:116747282"
ORIGIN      
        1 gtcttcctgc cgtaacctgg tcaccttgga gtgttagaat gatccacaaa agttaccagc
       61 cgagtctgtt ggctcttctc tctcccagcc cttaaagggt ttggggacca gggaagaacc
      121 ccatgtggcg tttggctctc tcctcctctc gttcgcccca gtccctcatc gtttgagtca
      181 gacgctgggg ccaaaagtct ggctgcctgt ttagcgtgta gtagtgagta ctcggtttcc
      241 ggaggtattt aagcaaagac tggagtttgg cggtggtgga gtataagcct tcctaaacgg
      301 aataatgtag tagacaaccc cttttaaaag acccttctag tcgtgaagag tatgatgtag
      361 agtttggtcg gagaacatca acctccagca acaaccccgc cggcacttcc tactcaaaac
      421 taaaatacag gagagagtgg gtcagttttc agtatccgtg gcgtgacagt cactgaggta
      481 gatctgcaga agcttctacc taatcacgca ggccgtgtcg gtacttcctc gttctcacgc
      541 ccttggtctg catcctctag ggctctttga gtacacgcct cctcggatgc aaaaaccttt
      601 tcggtttcta atgaaggcag ttcctcatca gctactcaga accaagaaaa atttgccaga
      661 taaatctctg tagaaaccct aatttgggcc tggaaatccc gggagcaagt gtcaatttgt
      721 cactccttaa ggacatgaaa gtcccagaaa cttgatggtg gtgaagtgct ggcggttatt
      781 tagaaagact gacaatctaa aagatcgcct ggggccttgg cctgagatct gggagcctgt
      841 gaagtgactg ggaagccatg gacgcagctg agaaaatcag tgttgaagat gaagctgtgg
      901 ataaaaagat tttcaaagac tgcagcaaga ttgctttcta caggcgtcag aaacagcggc
      961 tctccaagaa gtctacctat cgggcattac tagactcagt cacagaaggc aaagagagca
     1021 ccaggttcca aatcatcaac gaagcagcta aggttcctct cctggctgaa gtttatggta
     1081 tagagggaaa tattttcagg cttaaaatca atgaagaaac acccttgaaa cccagatacg
     1141 aagttcctga tgtcctcaca agcaagccaa gcactgtaag gctgatttca tgctcagggg
     1201 atacaggcag tctcgtattg gcaaatggaa aaggagatct gaagtgtcac atcacagcaa
     1261 acccattcaa gatagacttg gtatctgaag aagaggttgt gatgagcata aactccctgg
     1321 gccaactgta ctttgagcag ctgcagattc ctcccaagca aagcagagct accaaggaaa
     1381 atgaggagga tacatcagat gacaccactc aggaaaatca agaggaactg ggcctgtggg
     1441 aggagaaatt cagaaatttt gtggacgtca aagataatgg tcctgcctcc attggtttgg
     1501 atttctcctt gcatgggttt gagcatgtct atgggatccc acaacatgca gaatcacacc
     1561 aacttaaaaa taccagtgat ggagatgctt accgtcttta taacctagat gtctatggat
     1621 ataaaataca tgacaaaatg ggcatttatg gttcagtgcc ttatctcctg gcccacaaac
     1681 tgggcaggac tctaggcatt ttttggctaa atgcctcaga aacactagtg gagatcaata
     1741 cagaacctgc tgtaaagcat gcattgaccc agatgggccc agttgctgct aaagaaaagg
     1801 gcagatctca aactgatgtg cactggatgt cagagagtgg aatcattgat gtttttttgc
     1861 tgacaggacc tacaccttct gacgtcttca agcagtactc ataccttaca ggcacacaag
     1921 ccatgccccc tctcttctcc ttggggtacc atcagtgccg ctggaactac aaagatgagc
     1981 atgatgtaaa ggcagtggat gcaggatttg atgaacatga cattccttac gatgtcatgt
     2041 ggctggacat agagcacact gaaggcaaga ggtacttcac ctggaacgag aaaaggttcc
     2101 caaaccccaa aaggatgcaa gagctgctca ggagcaaaaa acgtaagctt gtggtcatta
     2161 gtgaccccca catcaagatt gatcccgact acttagtgta tgctaaggcc aaagaacagg
     2221 gcttctttgt gaggaatcat gaagggggag actttgaagg tgtatgctgg cctggtctct
     2281 cctcttacct ggattttacc agtcccaaag tcagagagtg gtattccagt ctttttgctt
     2341 tctctgttta tcagggatct actgacatcc tctacatatg gaacgacatg aatgagccct
     2401 ctgtctttag agggccagaa ctaaccatgc agaagaatgc cattcatcat ggcaactggg
     2461 agcaccgaga acttcacaac atctatggct tttatcagca aatggccact gcagaaggac
     2521 tgatccagcg atctaaaggg aaggagagac cctttgttct tacacgttct ttctttgctg
     2581 gatcacaaaa atatggtgct gtgtggacag gtgacaacac agcagagtgg agttacctga
     2641 aaatttctat ccctatgtta ctcaccctca gcgtgactgg gatctctttt tgtggagcgg
     2701 atgtaggcgg cttcatcggg aatccagagg cagagctgct agtgcggtgg taccaggctg
     2761 gagcctacca gcccttcttc cgtggccatg ccaccaagaa caccaagcga cgggaaccct
     2821 ggctctttgg ggaggagcac acccggctca tccaagaagc catcagagag cgctacaccc
     2881 tcctgcccta ctggtattct ctgttctact ctgcacacgt ggcttcccaa cccgtcatga
     2941 ggcctctgtg ggtagagttc cctgatgaat tagagacttt cagtgtggaa gatgaataca
     3001 tgctgggaag cgctttattg gttcacccag tcacagaacc aaaagctact gtggttgatg
     3061 tgtttctgcc aggatcaagt gaggtctggt atgactctaa gacatttgct cgttgggaag
     3121 gagcatgtac tgtaaagatc ccagtagcct tggacacgat accagtgttt caacgaggtg
     3181 gaagtgtggt accaataaag acaactatag gaagatccac gggctgcatg actgattccc
     3241 catatggact ccgggtggcc ctaagcacta agttgtgctg acaagagggg tcattatccc
     3301 agcaagtgtg tggtggagcg gatcttggtc ctaggcctca agaagcagcc atcttctgtg
     3361 accagccact cacctggtct aaatcatcct gcgg
//
LOCUS       XM_032619101            5458 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glucosidase alpha, neutral C (GANC),
            transcript variant X6, mRNA.
ACCESSION   XM_032619101
VERSION     XM_032619101.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5458
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5458
                     /gene="GANC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116747282"
     CDS             622..2919
                     /gene="GANC"
                     /codon_start=1
                     /product="neutral alpha-glucosidase C isoform X4"
                     /protein_id="XP_032474992.1"
                     /db_xref="GeneID:116747282"
                     /translation="MSINSLGQLYFEQLQIPPKQSRATKENEEDTSDDTTQENQEELG
                     LWEEKFRNFVDVKDNGPASIGLDFSLHGFEHVYGIPQHAESHQLKNTSDGDAYRLYNL
                     DVYGYKIHDKMGIYGSVPYLLAHKLGRTLGIFWLNASETLVEINTEPAVKHALTQMGP
                     VAAKEKGRSQTDVHWMSESGIIDVFLLTGPTPSDVFKQYSYLTGTQAMPPLFSLGYHQ
                     CRWNYKDEHDVKAVDAGFDEHDIPYDVMWLDIEHTEGKRYFTWNEKRFPNPKRMQELL
                     RSKKRKLVVISDPHIKIDPDYLVYAKAKEQGFFVRNHEGGDFEGVCWPGLSSYLDFTS
                     PKVREWYSSLFAFSVYQGSTDILYIWNDMNEPSVFRGPELTMQKNAIHHGNWEHRELH
                     NIYGFYQQMATAEGLIQRSKGKERPFVLTRSFFAGSQKYGAVWTGDNTAEWSYLKISI
                     PMLLTLSVTGISFCGADVGGFIGNPEAELLVRWYQAGAYQPFFRGHATKNTKRREPWL
                     FGEEHTRLIQEAIRERYTLLPYWYSLFYSAHVASQPVMRPLWVEFPDELETFSVEDEY
                     MLGSALLVHPVTEPKATVVDVFLPGSSEVWYDSKTFARWEGACTVKIPVALDTIPVFQ
                     RGGSVVPIKTTIGRSTGCMTDSPYGLRVALSTKGSAVGEFYLDDGHSFQYLHQKQFLH
                     RKFSFASGVLINSCADKRGHYPSKCVVERILVLGLKKQPSSVTSHSPDGKAQPVAFTY
                     CAKTSTLNLEKFSLNIGADWKVQIQ"
     misc_feature    811..1233
                     /gene="GANC"
                     /note="N-terminal domain of glycosyl hydrolase family 31
                     (GH31); Region: GH31_N; cd14752"
                     /db_xref="CDD:270212"
     misc_feature    928..930
                     /gene="GANC"
                     /note="active site"
                     /db_xref="CDD:270212"
     misc_feature    1231..2634
                     /gene="GANC"
                     /note="neutral alpha-glucosidase C, neutral
                     alpha-glucosidase AB; Region: GH31_GANC_GANAB_alpha;
                     cd06603"
                     /db_xref="CDD:269889"
     misc_feature    order(1366..1368,1705..1707,1885..1887,1924..1926,
                     1933..1935,2032..2034,2107..2109)
                     /gene="GANC"
                     /note="putative active site [active]"
                     /db_xref="CDD:269889"
ORIGIN      
        1 gaccactcac cgacggtatc ggaatgtgcc acttggatcg gtcggcagca gcgacggatg
       61 ccggtcctac actgaaaagc gacaatgggg acgtctgagc ccccaggaga agaagaatga
      121 caggcagcac ctgaagccac gcagccgccg ccatcttcac agccgtggag cgcctaccga
      181 aagcatttca ccttcttccg tgttgaagat gaagctgtgg ataaaaagat tttcaaagac
      241 tgcagcaaga ttgctttcta caggcgtcag aaacagcggc tctccaagaa gtctacctat
      301 cgggcattac tagactcagt cacagaaggc aaagagagca ccaggttcca aatcatcaac
      361 gaagcagcta aggttcctct cctggctgaa gtttatggta tagagggaaa tattttcagg
      421 cttaaaatca atgaagaaac acccttgaaa cccagatacg aagttcctga tgtcctcaca
      481 agcaagccaa gcactgtaag gctgatttca tgctcagggg atacaggcag tctcgtattg
      541 gcaaatggaa aaggagatct gaagtgtcac atcacagcaa acccattcaa gatagacttg
      601 gtatctgaag aagaggttgt gatgagcata aactccctgg gccaactgta ctttgagcag
      661 ctgcagattc ctcccaagca aagcagagct accaaggaaa atgaggagga tacatcagat
      721 gacaccactc aggaaaatca agaggaactg ggcctgtggg aggagaaatt cagaaatttt
      781 gtggacgtca aagataatgg tcctgcctcc attggtttgg atttctcctt gcatgggttt
      841 gagcatgtct atgggatccc acaacatgca gaatcacacc aacttaaaaa taccagtgat
      901 ggagatgctt accgtcttta taacctagat gtctatggat ataaaataca tgacaaaatg
      961 ggcatttatg gttcagtgcc ttatctcctg gcccacaaac tgggcaggac tctaggcatt
     1021 ttttggctaa atgcctcaga aacactagtg gagatcaata cagaacctgc tgtaaagcat
     1081 gcattgaccc agatgggccc agttgctgct aaagaaaagg gcagatctca aactgatgtg
     1141 cactggatgt cagagagtgg aatcattgat gtttttttgc tgacaggacc tacaccttct
     1201 gacgtcttca agcagtactc ataccttaca ggcacacaag ccatgccccc tctcttctcc
     1261 ttggggtacc atcagtgccg ctggaactac aaagatgagc atgatgtaaa ggcagtggat
     1321 gcaggatttg atgaacatga cattccttac gatgtcatgt ggctggacat agagcacact
     1381 gaaggcaaga ggtacttcac ctggaacgag aaaaggttcc caaaccccaa aaggatgcaa
     1441 gagctgctca ggagcaaaaa acgtaagctt gtggtcatta gtgaccccca catcaagatt
     1501 gatcccgact acttagtgta tgctaaggcc aaagaacagg gcttctttgt gaggaatcat
     1561 gaagggggag actttgaagg tgtatgctgg cctggtctct cctcttacct ggattttacc
     1621 agtcccaaag tcagagagtg gtattccagt ctttttgctt tctctgttta tcagggatct
     1681 actgacatcc tctacatatg gaacgacatg aatgagccct ctgtctttag agggccagaa
     1741 ctaaccatgc agaagaatgc cattcatcat ggcaactggg agcaccgaga acttcacaac
     1801 atctatggct tttatcagca aatggccact gcagaaggac tgatccagcg atctaaaggg
     1861 aaggagagac cctttgttct tacacgttct ttctttgctg gatcacaaaa atatggtgct
     1921 gtgtggacag gtgacaacac agcagagtgg agttacctga aaatttctat ccctatgtta
     1981 ctcaccctca gcgtgactgg gatctctttt tgtggagcgg atgtaggcgg cttcatcggg
     2041 aatccagagg cagagctgct agtgcggtgg taccaggctg gagcctacca gcccttcttc
     2101 cgtggccatg ccaccaagaa caccaagcga cgggaaccct ggctctttgg ggaggagcac
     2161 acccggctca tccaagaagc catcagagag cgctacaccc tcctgcccta ctggtattct
     2221 ctgttctact ctgcacacgt ggcttcccaa cccgtcatga ggcctctgtg ggtagagttc
     2281 cctgatgaat tagagacttt cagtgtggaa gatgaataca tgctgggaag cgctttattg
     2341 gttcacccag tcacagaacc aaaagctact gtggttgatg tgtttctgcc aggatcaagt
     2401 gaggtctggt atgactctaa gacatttgct cgttgggaag gagcatgtac tgtaaagatc
     2461 ccagtagcct tggacacgat accagtgttt caacgaggtg gaagtgtggt accaataaag
     2521 acaactatag gaagatccac gggctgcatg actgattccc catatggact ccgggtggcc
     2581 ctaagcacta agggttctgc tgtgggtgaa ttctatctcg atgatggtca ttcattccaa
     2641 tacctccacc agaagcaatt cttgcacagg aagttttcat tcgcctcagg tgttttgatc
     2701 aacagttgtg ctgacaagag gggtcattat cccagcaagt gtgtggtgga gcggatcttg
     2761 gtcctaggcc tcaagaagca gccatcttct gtgaccagcc actcacctga tggtaaagct
     2821 cagcctgtgg ctttcacata ttgtgccaaa acatccaccc tgaacctgga gaagttctca
     2881 ctgaacattg gtgctgactg gaaggtccaa atccagtgac agagcagtgc acctggtgac
     2941 aagtgatggg aggagctgca cctttctgcc tttccgccgg cctttttttg cgatttgtgc
     3001 tgcatgctat tgacttctct ggctcaaagt catctttcat aagtcaccag tttcctaacg
     3061 aacaatagct tccagatttt tcagatgtta catttttaga tgtgctaata atactctttg
     3121 tgtcacacac gccctctcct cctacatgca agtggcccag agacatttat agcgttcaca
     3181 gatctcgcat tgctccttgg gccatgacct gtggtatgca ctctggccca gtgggcagtt
     3241 tctctttgag cacagctgga tgggtttgtt ttatgtgaga agtgggccaa gcccacccac
     3301 cttgtggaag cttgtctcag tccatgtggc agagccactc gggctccagc agctgagctg
     3361 ctcaaggcct atctccaagt ggacagcagc ttctggtgcc cccccacccc agttatcttt
     3421 tacccactta gacctggaca agacaacctt ttctgcttgg agtgtactca ctgcagcaac
     3481 agggagttac tctaccctag agactgactc aggaacacaa agggctcttt tccctgtcat
     3541 gttttttggg gtccaaagtt ccacattaat ctccttaaaa ttctaatttc ttgatattaa
     3601 tttttttatt aaatactgtc cactaaccaa agcttatttg taatatgagt aagctgtaat
     3661 ttaaaataat aaaataatta cccatgtccc caccctcaaa cttcagaaat agaacacagg
     3721 gccgggatga gggggaggca agtaaggcac ttgcctgggg cacaaaattt aaggggatgc
     3781 cccaaatcac agtaatcaaa ataaataata ttttaatgca atatttttaa aaatcaaaat
     3841 taacagcagg gcttccctgg tggagcagtg gttgagagtc cgcctgccga tgcaggggac
     3901 gtgggttcat gccccggtct gggaagatcc cacatgccgc agagcggctg ggcccgtgag
     3961 ccgtggccgc tgagcctgca cgtccagagc ctgtgctgtg caacgggaga ggccacaaca
     4021 gtgagaggcc cacgtaccgc aaaaaaaaaa aaaaaaaaga caaaattaac agcaaaaaaa
     4081 aaaaatccat gatgaacaaa atatcaaaat tttaaataag gacaggatcg atagtactgc
     4141 gttttacttt tgcctcagac tctagtacag tgtggcgtgg gctagaacac tacaccatgc
     4201 cagttcccca ggatgctccc cagggacgcc ctgcggccgg ctgcagcatc tgctggggca
     4261 gtcacatgtc ctcagcactg ctcaacatgc acatttgctt atcaggcttc ttccactcag
     4321 cagcttgcca actgccacct ctatgcctct gttccctggg tcccaatatc cacggtctgc
     4381 cctccacctg tgcaaatcct accatccatc caggcccaac tcaaatccca tttccccaca
     4441 gagcctttct aactacccta acaccctcaa ctcctctttt ctatgagcag tgattttgcc
     4501 cttctctgaa atgctgcccc acttataata tgcattctgc ttagcattct cagggatggt
     4561 gcctcagtgt ttcaggtttg tctgtcttgt tcccttacta gattgtatgt tcttcaagat
     4621 catgttatat ttgtcttata tctgccagag cacgattata cttggctttt agtaatggtt
     4681 ggctgtaatt ggttgactga tggatttgat ttatttaaaa ttgagaattg aatgtatttg
     4741 tttctaattt actcttctga cctagaactc ttccctccag atatagtaaa cattacacat
     4801 ttcctcatgg acacatttga ttgtatcagt tgagatttga gctttgcacc atatataagc
     4861 gcacatagac atatatagat tctttgctcc tatttctgta agttttgcaa ttaaggagaa
     4921 aggaagaagc ctccattagc tgaagtccga tttcccagct tcaagtttcc cttgccaagc
     4981 tacagtaaga cttaaactga aaactgaatg ctcttaccta atataaatga tggtttttaa
     5041 cagcacttaa ggctgaatat ttaagaccta tcgtcagttc aacatttatt atgtgtctat
     5101 tattcatcca tttaaaatat ttttggagga aggaatgaaa taagaacttt agagtaggtt
     5161 agtgaggaac tgctctgtct tggcccagaa ctatcctgaa aggtttaact agatacattg
     5221 aatggagaga aatacatcct gggtgttctt aaatgttatc tgctcttatt gcttctcaca
     5281 ctttaccccc ctcctatatc tgaagctcag gaccagagag ctaagcgggg ccgagttggc
     5341 ctacagtgtt gagttacctt gttgcggcta attctcgata tgttttctca ggaaactgga
     5401 ttttatgtaa gaacttagaa tcattttaac aaagattcaa ataaagctct aaaatgaa
//
LOCUS       XM_032619110            5966 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus glucosidase alpha, neutral C (GANC),
            transcript variant X7, mRNA.
ACCESSION   XM_032619110
VERSION     XM_032619110.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5966
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5966
                     /gene="GANC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747282"
     CDS             1130..3427
                     /gene="GANC"
                     /codon_start=1
                     /product="neutral alpha-glucosidase C isoform X4"
                     /protein_id="XP_032475001.1"
                     /db_xref="GeneID:116747282"
                     /translation="MSINSLGQLYFEQLQIPPKQSRATKENEEDTSDDTTQENQEELG
                     LWEEKFRNFVDVKDNGPASIGLDFSLHGFEHVYGIPQHAESHQLKNTSDGDAYRLYNL
                     DVYGYKIHDKMGIYGSVPYLLAHKLGRTLGIFWLNASETLVEINTEPAVKHALTQMGP
                     VAAKEKGRSQTDVHWMSESGIIDVFLLTGPTPSDVFKQYSYLTGTQAMPPLFSLGYHQ
                     CRWNYKDEHDVKAVDAGFDEHDIPYDVMWLDIEHTEGKRYFTWNEKRFPNPKRMQELL
                     RSKKRKLVVISDPHIKIDPDYLVYAKAKEQGFFVRNHEGGDFEGVCWPGLSSYLDFTS
                     PKVREWYSSLFAFSVYQGSTDILYIWNDMNEPSVFRGPELTMQKNAIHHGNWEHRELH
                     NIYGFYQQMATAEGLIQRSKGKERPFVLTRSFFAGSQKYGAVWTGDNTAEWSYLKISI
                     PMLLTLSVTGISFCGADVGGFIGNPEAELLVRWYQAGAYQPFFRGHATKNTKRREPWL
                     FGEEHTRLIQEAIRERYTLLPYWYSLFYSAHVASQPVMRPLWVEFPDELETFSVEDEY
                     MLGSALLVHPVTEPKATVVDVFLPGSSEVWYDSKTFARWEGACTVKIPVALDTIPVFQ
                     RGGSVVPIKTTIGRSTGCMTDSPYGLRVALSTKGSAVGEFYLDDGHSFQYLHQKQFLH
                     RKFSFASGVLINSCADKRGHYPSKCVVERILVLGLKKQPSSVTSHSPDGKAQPVAFTY
                     CAKTSTLNLEKFSLNIGADWKVQIQ"
     misc_feature    1319..1741
                     /gene="GANC"
                     /note="N-terminal domain of glycosyl hydrolase family 31
                     (GH31); Region: GH31_N; cd14752"
                     /db_xref="CDD:270212"
     misc_feature    1436..1438
                     /gene="GANC"
                     /note="active site"
                     /db_xref="CDD:270212"
     misc_feature    1739..3142
                     /gene="GANC"
                     /note="neutral alpha-glucosidase C, neutral
                     alpha-glucosidase AB; Region: GH31_GANC_GANAB_alpha;
                     cd06603"
                     /db_xref="CDD:269889"
     misc_feature    order(1874..1876,2213..2215,2393..2395,2432..2434,
                     2441..2443,2540..2542,2615..2617)
                     /gene="GANC"
                     /note="putative active site [active]"
                     /db_xref="CDD:269889"
ORIGIN      
        1 gtcttcctgc cgtaacctgg tcaccttgga gtgttagaat gatccacaaa agttaccagc
       61 cgagtctgtt ggctcttctc tctcccagcc cttaaagggt ttggggacca gggaagaacc
      121 ccatgtggcg tttggctctc tcctcctctc gttcgcccca gtccctcatc gtttgagtca
      181 gacgctgggg ccaaaagtct ggctgcctgt ttagcgtgta gtagtgagta ctcggtttcc
      241 ggaggtattt aagcaaagac tggagtttgg cggtggtgga gtataagcct tcctaaacgg
      301 aataatgtag tagacaaccc cttttaaaag acccttctag tcgtgaagag tatgatgtag
      361 agtttggtcg gagaacatca acctccagca acaaccccgc cggcacttcc tactcaaaac
      421 taaaatacag gagagagtgg gtcagttttc agtatccgtg gcgtgacagt cactgaggta
      481 gatctgcaga agcttctacc taatcacgca ggccgtgtcg gtacttcctc gttctcacgc
      541 ccttggtctg catcctctag ggctctttga gtacacgcct cctcggatgc aaaaaccttt
      601 tcggtttcta atgaaggcag ttcctcatca gctactcaga accaagaaaa atttgccaga
      661 taaatctctg tagaaaccct aatttgggcc tggaaatccc gggagcaagt gtcaatttgt
      721 cactccttaa ggacatgaaa gtcccagaaa cttgatggtg gtgaagtgct ggcggttatt
      781 tagaaagact gacaatctaa aagatcgcct ggggccttgg cctgagatct gggagcctgt
      841 gaagtgactg ggaagccatg gacgcagctg agaaaatcag gttcctctcc tggctgaagt
      901 ttatggtata gagggaaata ttttcaggct taaaatcaat gaagaaacac ccttgaaacc
      961 cagatacgaa gttcctgatg tcctcacaag caagccaagc actgtaaggc tgatttcatg
     1021 ctcaggggat acaggcagtc tcgtattggc aaatggaaaa ggagatctga agtgtcacat
     1081 cacagcaaac ccattcaaga tagacttggt atctgaagaa gaggttgtga tgagcataaa
     1141 ctccctgggc caactgtact ttgagcagct gcagattcct cccaagcaaa gcagagctac
     1201 caaggaaaat gaggaggata catcagatga caccactcag gaaaatcaag aggaactggg
     1261 cctgtgggag gagaaattca gaaattttgt ggacgtcaaa gataatggtc ctgcctccat
     1321 tggtttggat ttctccttgc atgggtttga gcatgtctat gggatcccac aacatgcaga
     1381 atcacaccaa cttaaaaata ccagtgatgg agatgcttac cgtctttata acctagatgt
     1441 ctatggatat aaaatacatg acaaaatggg catttatggt tcagtgcctt atctcctggc
     1501 ccacaaactg ggcaggactc taggcatttt ttggctaaat gcctcagaaa cactagtgga
     1561 gatcaataca gaacctgctg taaagcatgc attgacccag atgggcccag ttgctgctaa
     1621 agaaaagggc agatctcaaa ctgatgtgca ctggatgtca gagagtggaa tcattgatgt
     1681 ttttttgctg acaggaccta caccttctga cgtcttcaag cagtactcat accttacagg
     1741 cacacaagcc atgccccctc tcttctcctt ggggtaccat cagtgccgct ggaactacaa
     1801 agatgagcat gatgtaaagg cagtggatgc aggatttgat gaacatgaca ttccttacga
     1861 tgtcatgtgg ctggacatag agcacactga aggcaagagg tacttcacct ggaacgagaa
     1921 aaggttccca aaccccaaaa ggatgcaaga gctgctcagg agcaaaaaac gtaagcttgt
     1981 ggtcattagt gacccccaca tcaagattga tcccgactac ttagtgtatg ctaaggccaa
     2041 agaacagggc ttctttgtga ggaatcatga agggggagac tttgaaggtg tatgctggcc
     2101 tggtctctcc tcttacctgg attttaccag tcccaaagtc agagagtggt attccagtct
     2161 ttttgctttc tctgtttatc agggatctac tgacatcctc tacatatgga acgacatgaa
     2221 tgagccctct gtctttagag ggccagaact aaccatgcag aagaatgcca ttcatcatgg
     2281 caactgggag caccgagaac ttcacaacat ctatggcttt tatcagcaaa tggccactgc
     2341 agaaggactg atccagcgat ctaaagggaa ggagagaccc tttgttctta cacgttcttt
     2401 ctttgctgga tcacaaaaat atggtgctgt gtggacaggt gacaacacag cagagtggag
     2461 ttacctgaaa atttctatcc ctatgttact caccctcagc gtgactggga tctctttttg
     2521 tggagcggat gtaggcggct tcatcgggaa tccagaggca gagctgctag tgcggtggta
     2581 ccaggctgga gcctaccagc ccttcttccg tggccatgcc accaagaaca ccaagcgacg
     2641 ggaaccctgg ctctttgggg aggagcacac ccggctcatc caagaagcca tcagagagcg
     2701 ctacaccctc ctgccctact ggtattctct gttctactct gcacacgtgg cttcccaacc
     2761 cgtcatgagg cctctgtggg tagagttccc tgatgaatta gagactttca gtgtggaaga
     2821 tgaatacatg ctgggaagcg ctttattggt tcacccagtc acagaaccaa aagctactgt
     2881 ggttgatgtg tttctgccag gatcaagtga ggtctggtat gactctaaga catttgctcg
     2941 ttgggaagga gcatgtactg taaagatccc agtagccttg gacacgatac cagtgtttca
     3001 acgaggtgga agtgtggtac caataaagac aactatagga agatccacgg gctgcatgac
     3061 tgattcccca tatggactcc gggtggccct aagcactaag ggttctgctg tgggtgaatt
     3121 ctatctcgat gatggtcatt cattccaata cctccaccag aagcaattct tgcacaggaa
     3181 gttttcattc gcctcaggtg ttttgatcaa cagttgtgct gacaagaggg gtcattatcc
     3241 cagcaagtgt gtggtggagc ggatcttggt cctaggcctc aagaagcagc catcttctgt
     3301 gaccagccac tcacctgatg gtaaagctca gcctgtggct ttcacatatt gtgccaaaac
     3361 atccaccctg aacctggaga agttctcact gaacattggt gctgactgga aggtccaaat
     3421 ccagtgacag agcagtgcac ctggtgacaa gtgatgggag gagctgcacc tttctgcctt
     3481 tccgccggcc tttttttgcg atttgtgctg catgctattg acttctctgg ctcaaagtca
     3541 tctttcataa gtcaccagtt tcctaacgaa caatagcttc cagatttttc agatgttaca
     3601 tttttagatg tgctaataat actctttgtg tcacacacgc cctctcctcc tacatgcaag
     3661 tggcccagag acatttatag cgttcacaga tctcgcattg ctccttgggc catgacctgt
     3721 ggtatgcact ctggcccagt gggcagtttc tctttgagca cagctggatg ggtttgtttt
     3781 atgtgagaag tgggccaagc ccacccacct tgtggaagct tgtctcagtc catgtggcag
     3841 agccactcgg gctccagcag ctgagctgct caaggcctat ctccaagtgg acagcagctt
     3901 ctggtgcccc cccaccccag ttatctttta cccacttaga cctggacaag acaacctttt
     3961 ctgcttggag tgtactcact gcagcaacag ggagttactc taccctagag actgactcag
     4021 gaacacaaag ggctcttttc cctgtcatgt tttttggggt ccaaagttcc acattaatct
     4081 ccttaaaatt ctaatttctt gatattaatt tttttattaa atactgtcca ctaaccaaag
     4141 cttatttgta atatgagtaa gctgtaattt aaaataataa aataattacc catgtcccca
     4201 ccctcaaact tcagaaatag aacacagggc cgggatgagg gggaggcaag taaggcactt
     4261 gcctggggca caaaatttaa ggggatgccc caaatcacag taatcaaaat aaataatatt
     4321 ttaatgcaat atttttaaaa atcaaaatta acagcagggc ttccctggtg gagcagtggt
     4381 tgagagtccg cctgccgatg caggggacgt gggttcatgc cccggtctgg gaagatccca
     4441 catgccgcag agcggctggg cccgtgagcc gtggccgctg agcctgcacg tccagagcct
     4501 gtgctgtgca acgggagagg ccacaacagt gagaggccca cgtaccgcaa aaaaaaaaaa
     4561 aaaaaagaca aaattaacag caaaaaaaaa aaatccatga tgaacaaaat atcaaaattt
     4621 taaataagga caggatcgat agtactgcgt tttacttttg cctcagactc tagtacagtg
     4681 tggcgtgggc tagaacacta caccatgcca gttccccagg atgctcccca gggacgccct
     4741 gcggccggct gcagcatctg ctggggcagt cacatgtcct cagcactgct caacatgcac
     4801 atttgcttat caggcttctt ccactcagca gcttgccaac tgccacctct atgcctctgt
     4861 tccctgggtc ccaatatcca cggtctgccc tccacctgtg caaatcctac catccatcca
     4921 ggcccaactc aaatcccatt tccccacaga gcctttctaa ctaccctaac accctcaact
     4981 cctcttttct atgagcagtg attttgccct tctctgaaat gctgccccac ttataatatg
     5041 cattctgctt agcattctca gggatggtgc ctcagtgttt caggtttgtc tgtcttgttc
     5101 ccttactaga ttgtatgttc ttcaagatca tgttatattt gtcttatatc tgccagagca
     5161 cgattatact tggcttttag taatggttgg ctgtaattgg ttgactgatg gatttgattt
     5221 atttaaaatt gagaattgaa tgtatttgtt tctaatttac tcttctgacc tagaactctt
     5281 ccctccagat atagtaaaca ttacacattt cctcatggac acatttgatt gtatcagttg
     5341 agatttgagc tttgcaccat atataagcgc acatagacat atatagattc tttgctccta
     5401 tttctgtaag ttttgcaatt aaggagaaag gaagaagcct ccattagctg aagtccgatt
     5461 tcccagcttc aagtttccct tgccaagcta cagtaagact taaactgaaa actgaatgct
     5521 cttacctaat ataaatgatg gtttttaaca gcacttaagg ctgaatattt aagacctatc
     5581 gtcagttcaa catttattat gtgtctatta ttcatccatt taaaatattt ttggaggaag
     5641 gaatgaaata agaactttag agtaggttag tgaggaactg ctctgtcttg gcccagaact
     5701 atcctgaaag gtttaactag atacattgaa tggagagaaa tacatcctgg gtgttcttaa
     5761 atgttatctg ctcttattgc ttctcacact ttacccccct cctatatctg aagctcagga
     5821 ccagagagct aagcggggcc gagttggcct acagtgttga gttaccttgt tgcggctaat
     5881 tctcgatatg ttttctcagg aaactggatt ttatgtaaga acttagaatc attttaacaa
     5941 agattcaaat aaagctctaa aatgaa
//
LOCUS       XM_032619124            2977 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 87A (TMEM87A),
            transcript variant X1, mRNA.
ACCESSION   XM_032619124
VERSION     XM_032619124.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2977
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2977
                     /gene="TMEM87A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 12 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747302"
     CDS             96..1766
                     /gene="TMEM87A"
                     /codon_start=1
                     /product="transmembrane protein 87A isoform X1"
                     /protein_id="XP_032475015.1"
                     /db_xref="GeneID:116747302"
                     /translation="MAAAAWLQVLPVILLLLGAQTSPLSLFSVGPASVAAADRSKWHI
                     PIPSGKNYFSFGKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKAEEVE
                     TYLENLKEKKGLSGKYQTSSKLFQNCSELFKTQSFSGDFMHRLPLLGEKQEAKENGTN
                     LTFTGDKTVMHEPLKTWQDAPYIFIVHVGISPSKESSKENSLSNLFTMTVEVKGPYEY
                     LTLEEYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVF
                     YAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVV
                     VAGALYLLFSGMEGVLRVTGYFSYPLALIVNLALSAIDACIILWIFISLTQTMKLLKL
                     RRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLF
                     SMILFVIMVLWRPSANNQRFAFSPLSEEEEEDEQKEPMLKESFEGMKMRSTKQEPNGN
                     SKLNKAQEDDLKWVEENVPSSVTDVALPALLDSDEERMITHFERSKME"
     misc_feature    639..1499
                     /gene="TMEM87A"
                     /note="Lung seven transmembrane receptor; Region:
                     Lung_7-TM_R; pfam06814"
                     /db_xref="CDD:369089"
ORIGIN      
        1 cccggattat cccgccccca gagcggagcc ggaagagggc gggacaaacc ggaagaaggt
       61 gaaatgcttt cggtaggcgc tccacggctg tgaagatggc ggcggctgcg tggcttcagg
      121 tgctgcctgt cattcttctt ctcctggggg ctcagacgtc cccattgtcg cttttcagtg
      181 taggaccggc atccgtcgct gctgccgacc gatccaagtg gcacattccg ataccgtcgg
      241 ggaaaaatta ttttagtttt ggaaagatcc tcttcaaaaa taccactatc ttcctgaaat
      301 ttgatggaga accttgtgat gtatctttga atataacctg gtatctgaaa agtgctgact
      361 gttacaatga aatctacaac ttcaaggcag aagaagtgga gacatacttg gaaaacctta
      421 aggaaaaaaa aggcttgtct gggaaatatc aaacatcatc aaaattgttc caaaactgca
      481 gtgaactctt taaaacacag agtttttctg gggatttcat gcatcgattg cctcttttag
      541 gagaaaaaca ggaggccaag gagaatggaa caaatcttac ctttactgga gacaaaactg
      601 taatgcatga gcccttgaaa acttggcaag atgcaccata catttttatt gtacatgttg
      661 gcatttcacc ctccaaagaa tcatcaaaag aaaattcact aagtaatctt tttaccatga
      721 ctgttgaagt gaaaggtccc tatgaatacc tcacgcttga agaataccca ttgatgattt
      781 ttttcatggt gatgtgtatt gtatatgtcc tatttggtgt tctgtggctg gcatggtctg
      841 cttgctattg gagagatctc ctgagaattc agttttggat tggtgctgtc atcttcctgg
      901 gaatgcttga gaaagctgtc ttctatgcag aatttcagaa tatccgatac aaaggagaat
      961 ctgtccaagg tgccctgatc cttgcagagc tgctttcagc agttaaacgc tcactggctc
     1021 gaaccctggt catcatagtt agtctgggat atggcatagt caagcctcgc cttggagtca
     1081 ctcttcacaa ggttgtggta gcaggagctc tttatctttt gttctctggc atggaagggg
     1141 tcctcagagt tactgggtat ttttcttatc ccttggcttt gatagtaaac ctggccctct
     1201 cagcaattga tgcctgtatt attttatgga tatttattag cctgactcaa acaatgaagc
     1261 tattaaaact tcggaggaac attgtaaaac tctctttgta ccgacatttc accaacacac
     1321 ttatcttggc agtggcagca tctattgtgt ttatcatctg gacaaccatg aagttcagga
     1381 tagtgacttg tcagtcggat tggcgggagc tgtgggtgga tgatgccatc tggcggttgc
     1441 tgttctccat gatcctcttt gtcatcatgg ttctctggcg accatctgca aacaaccaga
     1501 ggtttgcctt ttcaccattg tctgaggaag aggaggagga tgaacaaaag gaacctatgc
     1561 tgaaagaaag ctttgaagga atgaaaatga gaagtaccaa acaagaacca aatggaaata
     1621 gtaaattaaa caaagcacag gaagatgatt taaagtgggt agaagagaat gttccttcat
     1681 ctgtgacaga tgtagcactt ccagcccttc tggattcaga tgaggaacga atgatcacac
     1741 actttgaaag gtccaaaatg gagtaaagaa tgggaagatt tgcagctgaa gatggctagt
     1801 acctgggaag agatcagctt ctgtgttagt ctttacactg ctccatggga ttaaaggagg
     1861 caatgacatc ctgatctgtt ccttgatctt tgtgcattgg agctggcgag aggtgttgga
     1921 acaaggagaa cattctattg aaaacaaggt cataggatga gaaaaatcta caagtttttt
     1981 atttgcagca ttgatgcccc tttccctccc acaccctgac atggatgttt atgcaacttg
     2041 tgtatgttgt tcctaaacct tctgtaatgt ttaaattgtt taatctgtca aactaaaaaa
     2101 tttaacatct tctgaagaac tgtgacatca acaccataat aagtaatatc caggagcaac
     2161 tgcctgtaat tttaatttat ttagggagtt acataggtga tgggggaaat tgttaattat
     2221 ctttgcattt cctgggaagc caaggttaaa tcttgcagag gtagttttga gaaaaaggag
     2281 tccttctgcg ttaaggagcc atggttctaa caatgattaa aagaacaacc aaaaaaaaaa
     2341 agagactgtt acagtgtgat ttagatcatt tgaaaaagca aaatcaagtg caattttgtt
     2401 tacaaacggt gtatattaaa gatttttcta tttcagatgt actttagaga gaaatattag
     2461 cttaactctt gacatctgct attgtgacac atcccattgc tggcaatgtg gtgcacactc
     2521 cagaactttt aactactgtt ttgtaagcct tcaagggcag cattgcagag tcctaggcaa
     2581 tgctttgctt gccttcatgc cttttactgg gtgttgcact agatgcagaa aggcactctg
     2641 tcgtaagtgc atgtgagtga gcaccctgtt aaagggatta taatgcttca gaagcaggag
     2701 ctaatacaaa ggaaacaggt ccttctggct taaacagttt tttctgcatg aaatagtgtg
     2761 gaggccctgg actgctgctc attctttagg atcgactgtt cttgtatctg gtgttggttt
     2821 agggatggtt tataagaaac atcacaaggt gatgggattc atttgaagca ctgtatttgt
     2881 ttgaatgatt ttgtccaatt ttgccttccc aagatttttt gttctacata gaaagttcat
     2941 gccacttttt aatattaaaa aattttaaca aaattga
//
LOCUS       XM_032619135            2939 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 87A (TMEM87A),
            transcript variant X2, mRNA.
ACCESSION   XM_032619135
VERSION     XM_032619135.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2939
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2939
                     /gene="TMEM87A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 23 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747302"
     CDS             61..1728
                     /gene="TMEM87A"
                     /codon_start=1
                     /product="transmembrane protein 87A isoform X2"
                     /protein_id="XP_032475026.1"
                     /db_xref="GeneID:116747302"
                     /translation="MAAAAWLQVLPVILLLLGAQTSPLSLFSVGPASVAAADRSKWHI
                     PIPSGKNYFSFGKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKAEEVE
                     TYLENLKEKKGLSGKYQTSSKLFQNCSELFKTQSFSGDFMHRLPLLGEKQEAKENGTN
                     LTFTGDKTVMHEPLKTWQDAPYIFIVHVGISPSKESSKENSLSNLFTMTVEVKGPYEY
                     LTLEEYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVF
                     YAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVV
                     VAGALYLLFSGMEGVLRVTGAQTDLASLAFIPLAFLDTALCWWIFISLTQTMKLLKLR
                     RNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFS
                     MILFVIMVLWRPSANNQRFAFSPLSEEEEEDEQKEPMLKESFEGMKMRSTKQEPNGNS
                     KLNKAQEDDLKWVEENVPSSVTDVALPALLDSDEERMITHFERSKME"
     misc_feature    604..1461
                     /gene="TMEM87A"
                     /note="Lung seven transmembrane receptor; Region:
                     Lung_7-TM_R; pfam06814"
                     /db_xref="CDD:369089"
ORIGIN      
        1 agggcgggac aaaccggaag aaggtgaaat gctttcggta ggcgctccac ggctgtgaag
       61 atggcggcgg ctgcgtggct tcaggtgctg cctgtcattc ttcttctcct gggggctcag
      121 acgtccccat tgtcgctttt cagtgtagga ccggcatccg tcgctgctgc cgaccgatcc
      181 aagtggcaca ttccgatacc gtcggggaaa aattatttta gttttggaaa gatcctcttc
      241 aaaaatacca ctatcttcct gaaatttgat ggagaacctt gtgatgtatc tttgaatata
      301 acctggtatc tgaaaagtgc tgactgttac aatgaaatct acaacttcaa ggcagaagaa
      361 gtggagacat acttggaaaa ccttaaggaa aaaaaaggct tgtctgggaa atatcaaaca
      421 tcatcaaaat tgttccaaaa ctgcagtgaa ctctttaaaa cacagagttt ttctggggat
      481 ttcatgcatc gattgcctct tttaggagaa aaacaggagg ccaaggagaa tggaacaaat
      541 cttaccttta ctggagacaa aactgtaatg catgagccct tgaaaacttg gcaagatgca
      601 ccatacattt ttattgtaca tgttggcatt tcaccctcca aagaatcatc aaaagaaaat
      661 tcactaagta atctttttac catgactgtt gaagtgaaag gtccctatga atacctcacg
      721 cttgaagaat acccattgat gatttttttc atggtgatgt gtattgtata tgtcctattt
      781 ggtgttctgt ggctggcatg gtctgcttgc tattggagag atctcctgag aattcagttt
      841 tggattggtg ctgtcatctt cctgggaatg cttgagaaag ctgtcttcta tgcagaattt
      901 cagaatatcc gatacaaagg agaatctgtc caaggtgccc tgatccttgc agagctgctt
      961 tcagcagtta aacgctcact ggctcgaacc ctggtcatca tagttagtct gggatatggc
     1021 atagtcaagc ctcgccttgg agtcactctt cacaaggttg tggtagcagg agctctttat
     1081 cttttgttct ctggcatgga aggggtcctc agagttactg gggcccagac tgatcttgct
     1141 tccttggcct ttatcccctt ggctttccta gacactgccc tgtgctggtg gatatttatt
     1201 agcctgactc aaacaatgaa gctattaaaa cttcggagga acattgtaaa actctctttg
     1261 taccgacatt tcaccaacac acttatcttg gcagtggcag catctattgt gtttatcatc
     1321 tggacaacca tgaagttcag gatagtgact tgtcagtcgg attggcggga gctgtgggtg
     1381 gatgatgcca tctggcggtt gctgttctcc atgatcctct ttgtcatcat ggttctctgg
     1441 cgaccatctg caaacaacca gaggtttgcc ttttcaccat tgtctgagga agaggaggag
     1501 gatgaacaaa aggaacctat gctgaaagaa agctttgaag gaatgaaaat gagaagtacc
     1561 aaacaagaac caaatggaaa tagtaaatta aacaaagcac aggaagatga tttaaagtgg
     1621 gtagaagaga atgttccttc atctgtgaca gatgtagcac ttccagccct tctggattca
     1681 gatgaggaac gaatgatcac acactttgaa aggtccaaaa tggagtaaag aatgggaaga
     1741 tttgcagctg aagatggcta gtacctggga agagatcagc ttctgtgtta gtctttacac
     1801 tgctccatgg gattaaagga ggcaatgaca tcctgatctg ttccttgatc tttgtgcatt
     1861 ggagctggcg agaggtgttg gaacaaggag aacattctat tgaaaacaag gtcataggat
     1921 gagaaaaatc tacaagtttt ttatttgcag cattgatgcc cctttccctc ccacaccctg
     1981 acatggatgt ttatgcaact tgtgtatgtt gttcctaaac cttctgtaat gtttaaattg
     2041 tttaatctgt caaactaaaa aatttaacat cttctgaaga actgtgacat caacaccata
     2101 ataagtaata tccaggagca actgcctgta attttaattt atttagggag ttacataggt
     2161 gatgggggaa attgttaatt atctttgcat ttcctgggaa gccaaggtta aatcttgcag
     2221 aggtagtttt gagaaaaagg agtccttctg cgttaaggag ccatggttct aacaatgatt
     2281 aaaagaacaa ccaaaaaaaa aaagagactg ttacagtgtg atttagatca tttgaaaaag
     2341 caaaatcaag tgcaattttg tttacaaacg gtgtatatta aagatttttc tatttcagat
     2401 gtactttaga gagaaatatt agcttaactc ttgacatctg ctattgtgac acatcccatt
     2461 gctggcaatg tggtgcacac tccagaactt ttaactactg ttttgtaagc cttcaagggc
     2521 agcattgcag agtcctaggc aatgctttgc ttgccttcat gccttttact gggtgttgca
     2581 ctagatgcag aaaggcactc tgtcgtaagt gcatgtgagt gagcaccctg ttaaagggat
     2641 tataatgctt cagaagcagg agctaataca aaggaaacag gtccttctgg cttaaacagt
     2701 tttttctgca tgaaatagtg tggaggccct ggactgctgc tcattcttta ggatcgactg
     2761 ttcttgtatc tggtgttggt ttagggatgg tttataagaa acatcacaag gtgatgggat
     2821 tcatttgaag cactgtattt gtttgaatga ttttgtccaa ttttgccttc ccaagatttt
     2881 ttgttctaca tagaaagttc atgccacttt ttaatattaa aaaattttaa caaaattga
//
LOCUS       XM_032619145            2942 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 87A (TMEM87A),
            transcript variant X3, mRNA.
ACCESSION   XM_032619145
VERSION     XM_032619145.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2942
                     /gene="TMEM87A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747302"
     CDS             64..1731
                     /gene="TMEM87A"
                     /codon_start=1
                     /product="transmembrane protein 87A isoform X3"
                     /protein_id="XP_032475036.1"
                     /db_xref="GeneID:116747302"
                     /translation="MAAAAWLQVLPVILLLLGAQTSPLSLFSVGPASVAAADRSKWHI
                     PIPSGKNYFSFGKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKAEEVE
                     TYLENLKEKKGLSGKYQTSSKLFQNCSELFKTQSFSGDFMHRLPLLGEKQEAKENGTN
                     LTFTGDKTVMHEPLKTWQDAPYIFIVHVGISPSKESSKENSLSNLFTMTVEVKGPYEY
                     LTLEEYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVF
                     YAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVV
                     VAGALYLLFSGMEGVLRVTGYFSYPLALIVNLALSAIDACIILWIFISLTQTMKLLKL
                     RRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLF
                     SMILFVIMVLWRPSANNQRFAFSPLSEEEEEDEQKEPMLKESFEGMKMRSTKQEPNGN
                     SKLNKAEDDLKWVEENVPSSVTDVALPALLDSDEERMITHFERSKME"
     misc_feature    607..1467
                     /gene="TMEM87A"
                     /note="Lung seven transmembrane receptor; Region:
                     Lung_7-TM_R; pfam06814"
                     /db_xref="CDD:369089"
ORIGIN      
        1 aagagggcgg gacaaaccgg aagaaggtga aatgctttcg gtaggcgctc cacggctgtg
       61 aagatggcgg cggctgcgtg gcttcaggtg ctgcctgtca ttcttcttct cctgggggct
      121 cagacgtccc cattgtcgct tttcagtgta ggaccggcat ccgtcgctgc tgccgaccga
      181 tccaagtggc acattccgat accgtcgggg aaaaattatt ttagttttgg aaagatcctc
      241 ttcaaaaata ccactatctt cctgaaattt gatggagaac cttgtgatgt atctttgaat
      301 ataacctggt atctgaaaag tgctgactgt tacaatgaaa tctacaactt caaggcagaa
      361 gaagtggaga catacttgga aaaccttaag gaaaaaaaag gcttgtctgg gaaatatcaa
      421 acatcatcaa aattgttcca aaactgcagt gaactcttta aaacacagag tttttctggg
      481 gatttcatgc atcgattgcc tcttttagga gaaaaacagg aggccaagga gaatggaaca
      541 aatcttacct ttactggaga caaaactgta atgcatgagc ccttgaaaac ttggcaagat
      601 gcaccataca tttttattgt acatgttggc atttcaccct ccaaagaatc atcaaaagaa
      661 aattcactaa gtaatctttt taccatgact gttgaagtga aaggtcccta tgaatacctc
      721 acgcttgaag aatacccatt gatgattttt ttcatggtga tgtgtattgt atatgtccta
      781 tttggtgttc tgtggctggc atggtctgct tgctattgga gagatctcct gagaattcag
      841 ttttggattg gtgctgtcat cttcctggga atgcttgaga aagctgtctt ctatgcagaa
      901 tttcagaata tccgatacaa aggagaatct gtccaaggtg ccctgatcct tgcagagctg
      961 ctttcagcag ttaaacgctc actggctcga accctggtca tcatagttag tctgggatat
     1021 ggcatagtca agcctcgcct tggagtcact cttcacaagg ttgtggtagc aggagctctt
     1081 tatcttttgt tctctggcat ggaaggggtc ctcagagtta ctgggtattt ttcttatccc
     1141 ttggctttga tagtaaacct ggccctctca gcaattgatg cctgtattat tttatggata
     1201 tttattagcc tgactcaaac aatgaagcta ttaaaacttc ggaggaacat tgtaaaactc
     1261 tctttgtacc gacatttcac caacacactt atcttggcag tggcagcatc tattgtgttt
     1321 atcatctgga caaccatgaa gttcaggata gtgacttgtc agtcggattg gcgggagctg
     1381 tgggtggatg atgccatctg gcggttgctg ttctccatga tcctctttgt catcatggtt
     1441 ctctggcgac catctgcaaa caaccagagg tttgcctttt caccattgtc tgaggaagag
     1501 gaggaggatg aacaaaagga acctatgctg aaagaaagct ttgaaggaat gaaaatgaga
     1561 agtaccaaac aagaaccaaa tggaaatagt aaattaaaca aagcagaaga tgatttaaag
     1621 tgggtagaag agaatgttcc ttcatctgtg acagatgtag cacttccagc ccttctggat
     1681 tcagatgagg aacgaatgat cacacacttt gaaaggtcca aaatggagta aagaatggga
     1741 agatttgcag ctgaagatgg ctagtacctg ggaagagatc agcttctgtg ttagtcttta
     1801 cactgctcca tgggattaaa ggaggcaatg acatcctgat ctgttccttg atctttgtgc
     1861 attggagctg gcgagaggtg ttggaacaag gagaacattc tattgaaaac aaggtcatag
     1921 gatgagaaaa atctacaagt tttttatttg cagcattgat gcccctttcc ctcccacacc
     1981 ctgacatgga tgtttatgca acttgtgtat gttgttccta aaccttctgt aatgtttaaa
     2041 ttgtttaatc tgtcaaacta aaaaatttaa catcttctga agaactgtga catcaacacc
     2101 ataataagta atatccagga gcaactgcct gtaattttaa tttatttagg gagttacata
     2161 ggtgatgggg gaaattgtta attatctttg catttcctgg gaagccaagg ttaaatcttg
     2221 cagaggtagt tttgagaaaa aggagtcctt ctgcgttaag gagccatggt tctaacaatg
     2281 attaaaagaa caaccaaaaa aaaaaagaga ctgttacagt gtgatttaga tcatttgaaa
     2341 aagcaaaatc aagtgcaatt ttgtttacaa acggtgtata ttaaagattt ttctatttca
     2401 gatgtacttt agagagaaat attagcttaa ctcttgacat ctgctattgt gacacatccc
     2461 attgctggca atgtggtgca cactccagaa cttttaacta ctgttttgta agccttcaag
     2521 ggcagcattg cagagtccta ggcaatgctt tgcttgcctt catgcctttt actgggtgtt
     2581 gcactagatg cagaaaggca ctctgtcgta agtgcatgtg agtgagcacc ctgttaaagg
     2641 gattataatg cttcagaagc aggagctaat acaaaggaaa caggtccttc tggcttaaac
     2701 agttttttct gcatgaaata gtgtggaggc cctggactgc tgctcattct ttaggatcga
     2761 ctgttcttgt atctggtgtt ggtttaggga tggtttataa gaaacatcac aaggtgatgg
     2821 gattcatttg aagcactgta tttgtttgaa tgattttgtc caattttgcc ttcccaagat
     2881 tttttgttct acatagaaag ttcatgccac tttttaatat taaaaaattt taacaaaatt
     2941 ga
//
LOCUS       XM_032619154            2937 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 87A (TMEM87A),
            transcript variant X4, mRNA.
ACCESSION   XM_032619154
VERSION     XM_032619154.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2937
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2937
                     /gene="TMEM87A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747302"
     CDS             62..1726
                     /gene="TMEM87A"
                     /codon_start=1
                     /product="transmembrane protein 87A isoform X4"
                     /protein_id="XP_032475045.1"
                     /db_xref="GeneID:116747302"
                     /translation="MAAAAWLQVLPVILLLLGAQTSPLSLFSVGPASVAAADRSKWHI
                     PIPSGKNYFSFGKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKAEEVE
                     TYLENLKEKKGLSGKYQTSSKLFQNCSELFKTQSFSGDFMHRLPLLGEKQEAKENGTN
                     LTFTGDKTVMHEPLKTWQDAPYIFIVHVGISPSKESSKENSLSNLFTMTVEVKGPYEY
                     LTLEEYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVF
                     YAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVV
                     VAGALYLLFSGMEGVLRVTGAQTDLASLAFIPLAFLDTALCWWIFISLTQTMKLLKLR
                     RNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFS
                     MILFVIMVLWRPSANNQRFAFSPLSEEEEEDEQKEPMLKESFEGMKMRSTKQEPNGNS
                     KLNKAEDDLKWVEENVPSSVTDVALPALLDSDEERMITHFERSKME"
     misc_feature    605..1462
                     /gene="TMEM87A"
                     /note="Lung seven transmembrane receptor; Region:
                     Lung_7-TM_R; pfam06814"
                     /db_xref="CDD:369089"
ORIGIN      
        1 gagggcggga caaaccggaa gaaggtgaaa tgctttcggt aggcgctcca cggctgtgaa
       61 gatggcggcg gctgcgtggc ttcaggtgct gcctgtcatt cttcttctcc tgggggctca
      121 gacgtcccca ttgtcgcttt tcagtgtagg accggcatcc gtcgctgctg ccgaccgatc
      181 caagtggcac attccgatac cgtcggggaa aaattatttt agttttggaa agatcctctt
      241 caaaaatacc actatcttcc tgaaatttga tggagaacct tgtgatgtat ctttgaatat
      301 aacctggtat ctgaaaagtg ctgactgtta caatgaaatc tacaacttca aggcagaaga
      361 agtggagaca tacttggaaa accttaagga aaaaaaaggc ttgtctggga aatatcaaac
      421 atcatcaaaa ttgttccaaa actgcagtga actctttaaa acacagagtt tttctgggga
      481 tttcatgcat cgattgcctc ttttaggaga aaaacaggag gccaaggaga atggaacaaa
      541 tcttaccttt actggagaca aaactgtaat gcatgagccc ttgaaaactt ggcaagatgc
      601 accatacatt tttattgtac atgttggcat ttcaccctcc aaagaatcat caaaagaaaa
      661 ttcactaagt aatcttttta ccatgactgt tgaagtgaaa ggtccctatg aatacctcac
      721 gcttgaagaa tacccattga tgattttttt catggtgatg tgtattgtat atgtcctatt
      781 tggtgttctg tggctggcat ggtctgcttg ctattggaga gatctcctga gaattcagtt
      841 ttggattggt gctgtcatct tcctgggaat gcttgagaaa gctgtcttct atgcagaatt
      901 tcagaatatc cgatacaaag gagaatctgt ccaaggtgcc ctgatccttg cagagctgct
      961 ttcagcagtt aaacgctcac tggctcgaac cctggtcatc atagttagtc tgggatatgg
     1021 catagtcaag cctcgccttg gagtcactct tcacaaggtt gtggtagcag gagctcttta
     1081 tcttttgttc tctggcatgg aaggggtcct cagagttact ggggcccaga ctgatcttgc
     1141 ttccttggcc tttatcccct tggctttcct agacactgcc ctgtgctggt ggatatttat
     1201 tagcctgact caaacaatga agctattaaa acttcggagg aacattgtaa aactctcttt
     1261 gtaccgacat ttcaccaaca cacttatctt ggcagtggca gcatctattg tgtttatcat
     1321 ctggacaacc atgaagttca ggatagtgac ttgtcagtcg gattggcggg agctgtgggt
     1381 ggatgatgcc atctggcggt tgctgttctc catgatcctc tttgtcatca tggttctctg
     1441 gcgaccatct gcaaacaacc agaggtttgc cttttcacca ttgtctgagg aagaggagga
     1501 ggatgaacaa aaggaaccta tgctgaaaga aagctttgaa ggaatgaaaa tgagaagtac
     1561 caaacaagaa ccaaatggaa atagtaaatt aaacaaagca gaagatgatt taaagtgggt
     1621 agaagagaat gttccttcat ctgtgacaga tgtagcactt ccagcccttc tggattcaga
     1681 tgaggaacga atgatcacac actttgaaag gtccaaaatg gagtaaagaa tgggaagatt
     1741 tgcagctgaa gatggctagt acctgggaag agatcagctt ctgtgttagt ctttacactg
     1801 ctccatggga ttaaaggagg caatgacatc ctgatctgtt ccttgatctt tgtgcattgg
     1861 agctggcgag aggtgttgga acaaggagaa cattctattg aaaacaaggt cataggatga
     1921 gaaaaatcta caagtttttt atttgcagca ttgatgcccc tttccctccc acaccctgac
     1981 atggatgttt atgcaacttg tgtatgttgt tcctaaacct tctgtaatgt ttaaattgtt
     2041 taatctgtca aactaaaaaa tttaacatct tctgaagaac tgtgacatca acaccataat
     2101 aagtaatatc caggagcaac tgcctgtaat tttaatttat ttagggagtt acataggtga
     2161 tgggggaaat tgttaattat ctttgcattt cctgggaagc caaggttaaa tcttgcagag
     2221 gtagttttga gaaaaaggag tccttctgcg ttaaggagcc atggttctaa caatgattaa
     2281 aagaacaacc aaaaaaaaaa agagactgtt acagtgtgat ttagatcatt tgaaaaagca
     2341 aaatcaagtg caattttgtt tacaaacggt gtatattaaa gatttttcta tttcagatgt
     2401 actttagaga gaaatattag cttaactctt gacatctgct attgtgacac atcccattgc
     2461 tggcaatgtg gtgcacactc cagaactttt aactactgtt ttgtaagcct tcaagggcag
     2521 cattgcagag tcctaggcaa tgctttgctt gccttcatgc cttttactgg gtgttgcact
     2581 agatgcagaa aggcactctg tcgtaagtgc atgtgagtga gcaccctgtt aaagggatta
     2641 taatgcttca gaagcaggag ctaatacaaa ggaaacaggt ccttctggct taaacagttt
     2701 tttctgcatg aaatagtgtg gaggccctgg actgctgctc attctttagg atcgactgtt
     2761 cttgtatctg gtgttggttt agggatggtt tataagaaac atcacaaggt gatgggattc
     2821 atttgaagca ctgtatttgt ttgaatgatt ttgtccaatt ttgccttccc aagatttttt
     2881 gttctacata gaaagttcat gccacttttt aatattaaaa aattttaaca aaattga
//
LOCUS       XR_004347984            5534 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transmembrane protein 87A (TMEM87A),
            transcript variant X5, misc_RNA.
ACCESSION   XR_004347984
VERSION     XR_004347984.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5534
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5534
                     /gene="TMEM87A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747302"
     misc_RNA        1..5534
                     /gene="TMEM87A"
                     /product="transmembrane protein 87A, transcript variant
                     X5"
                     /db_xref="GeneID:116747302"
ORIGIN      
        1 agccggaaga gggcgggaca aaccggaaga aggtgaaatg ctttcggtag gcgctccacg
       61 gctgtgaaga tggcggcggc tgcgtggctt caggtgctgc ctgtcattct tcttctcctg
      121 ggggctcaga cgtccccatt gtcgcttttc agtgtaggac cggcatccgt cgctgctgcc
      181 gaccgatcca agtggcacat tccgataccg tcggggaaaa attattttag ttttggaaag
      241 atcctcttca aaaataccac tatcttcctg aaatttgatg gagaaccttg tgatgtatct
      301 ttgaatataa cctggtatct gaaaagtgct gactgttaca atgaaatcta caacttcaag
      361 gcagaagaag tggagacata cttggaaaac cttaaggaaa aaaaaggctt gtctgggaaa
      421 tatcaaacat catcaaaatt gttccaaaac tgcagtgaac tctttaaaac acagagtttt
      481 tctggggatt tcatgcatcg attgcctctt ttaggagaaa aacaggaggc caaggagaat
      541 ggaacaaatc ttacctttac tggagacaaa actgtaatgc atgagccctt gaaaacttgg
      601 caagatgcac catacatttt tattgtacat gttggcattt caccctccaa agaatcatca
      661 aaagaaaatt cactaagtaa tctttttacc atgactgttg aagtgaaagg tccctatgaa
      721 tacctcacgc ttgaagaata cccattgatg atttttttca tggtgatgtg tattgtatat
      781 gtcctatttg gtgttctgtg gctggcatgg tctgcttgct attggagaga tctcctgaga
      841 attcagtttt ggattggtgc tgtcatcttc ctgggaatgc ttgagaaagc tgtcttctat
      901 gcagaatttc agaatatccg atacaaagga gaatctgtcc aaggtgccct gatccttgca
      961 gagctgcttt cagcagttaa acgctcactg gctcgaaccc tggtcatcat agttagtctg
     1021 ggatatggca tagtcaagta agtattaact tcctatatgg aagagcaaat taaaatgctg
     1081 attaaattga aacagtgtta caggtttcca gtgtaattct gaaagtcgat ataagaaata
     1141 tttctgaaat caaaggtatc tgaaatattg tagatttgta aaagttggaa aaatattagt
     1201 gtttcatttt actacttaga atttaaggag catctgcagg aaaacttgca gtatagcaaa
     1261 tgacattgaa acatcaaact tttaaactta ctgtgacttt cctcttccaa agtattcttg
     1321 caaatcatat ttttttaatg ggaagagcat tcttgagtgc cttctatata ttagacattc
     1381 taggccctag ggatacagca agaaaacaaa agacttggag tttacatttg tggacagact
     1441 ggtgcacaga taaaaatacg tgagtaaaat aaaaatacgt gaatgaaaaa tctaatatgt
     1501 cagtgagcag ataaagcagg gaaagcatat agagttctag gcaggaggtg gaactttcat
     1561 ttgtaaatat ggtgctcaag gaaggcttca ctttggcagt taagcaaaga tccaagttgg
     1621 tgaagaagct atatgtacac caggggaaga aatgttaaga tgtggtcaga ttcttttata
     1681 ttttgaaggt agagccagta gactttgctg gtagatcaaa tgtgtgatgt gaaagaggaa
     1741 tcaaggatga tgccaactat tttgatctag aatcaaggat aatgtcaact attttgatct
     1801 aagcaagtgg aaggacggaa ctgacgttta ctgagttcag gaagatctta aatggaataa
     1861 atttggagtg gaggcaggat tagaaggtca gttagatatc caaatgaggg aagtaggagg
     1921 gagaaattaa ggcagagata taaatttggg agtcataagg atgtagctgt tatttaaagc
     1981 cattaagact ggatgtgatc atcaaggaag tgagtgtata cagagaagag gtcaaaggac
     2041 tgagcccttg gactattatt atttagaagt caatgaggtg aagtagaatt aggacagagg
     2101 aaattgagta gtgaccagtg aagtggaaga caaagctgaa cactgtttca aggggggagt
     2161 gattaattgt gtcaagtaag aggattgaga agtgatcact ggatttaact acatggagga
     2221 tattagcgac cttaaatgag aacagctttg atgaaggggt aggacaaaaa gcttgattgg
     2281 agtgagttta agagagaata aggggaattc tctcttaaat agggggagag gaattggagt
     2341 taggtataga cagttattca aggagttttg ctttaagtgg aattaaagaa atgggggact
     2401 ttaatttttt aaatttattc atttatttaa aggagttttg ctttaaatgg gattagggga
     2461 atggggggtt ctcactttta aaatgtatat gttcatttaa catatgtggt tgcctcctgt
     2521 atgccaggca gtattctggg tttctaagat aacaccattg gggaaataaa ttcctgctca
     2581 tttgcagttt ttctagcata taacaaaata taaggacaaa tattgctaag ccttaggtag
     2641 acatgattta aggcagtgca cctcataatg taatgcacta atgaatcacc tggggatctt
     2701 gttaaaacgt agattctgat tcagaggtac tttgagtatc aaggatctaa gatttttcct
     2761 ccttgacaca gaagctactc agacttttca cattttgctg gactttgagc ttgataacag
     2821 actaatgagt tttaataaga ttttgattgt attaaggaat tgttaacatt tttagatttg
     2881 ataatattgt ggttatgttt tttcaaagtc catatctgtt taaaaacata cggaaataca
     2941 tataaataaa aggtaagatc taggatttgt ttcagaatag tatgggagga tggaagtgga
     3001 taaggtgtgc atggggcagg attagatggc ttttgggact ggatgatggt tttatagggg
     3061 ttcattatac tattgaatat gtttcagaat tctctgtaat aaaaagtttt tttaaaaatg
     3121 cagtaaccag ggaccggatc tcaagttcta gagttcactg tcttgattta agaccatatg
     3181 tctgtctgag tttttcctca gctgaatcaa gtatgtctgg cttatatctg ttaagttgtt
     3241 ggcctgcgtt aatcaacatg agtttttgtt acttagcttg tctcggggtt tgttgcattt
     3301 gtactcattt ctttgcttcc tctttaggcc tcgccttgga gtcactcttc acaaggttgt
     3361 ggtagcagga gctctttatc ttttgttctc tggcatggaa ggggtcctca gagttactgg
     3421 ggtcagtatt gcttaatcag aatttttgtg gtcatttcag ataatatagt ttttgtcttg
     3481 aggaggttaa ttggaaatgt ctgtgggctt ctttactact tcctctaagt cacctttgag
     3541 ctgtggttta ccaaacgtat gtataattca ttttttcttt ttaatctatc tattagagct
     3601 tcataaattt aatgtgtgat ggggaatgaa cgctttccca cctgtcccca gattactgct
     3661 tatttactag ttccccagtg ggaagcagca atggagcagc tggctccatt cttgcgccca
     3721 gactgatctt gcttccttgg cctttatccc cttggctttc ctagacactg ccctgtgctg
     3781 gtggacatat ttattagcct gactcaaaca atgaagctat taaaacttcg gaggaacatt
     3841 gtaaaactct ctttgtaccg acatttcacc aacacactta tcttggcagt ggcagcatct
     3901 attgtgttta tcatctggac aaccatgaag ttcaggatag tgacttgtca gtcggattgg
     3961 cgggagctgt gggtggatga tgccatctgg cggttgctgt tctccatgat cctctttgtc
     4021 atcatggttc tctggcgacc atctgcaaac aaccagaggt ttgccttttc accattgtct
     4081 gaggaagagg aggaggatga acaaaaggaa cctatgctga aagaaagctt tgaaggaatg
     4141 aaaatgagaa gtaccaaaca agaaccaaat ggaaatagta aattaaacaa agcacaggaa
     4201 gatgatttaa agtgggtaga agagaatgtt ccttcatctg tgacagatgt agcacttcca
     4261 gcccttctgg attcagatga ggaacgaatg atcacacact ttgaaaggtc caaaatggag
     4321 taaagaatgg gaagatttgc agctgaagat ggctagtacc tgggaagaga tcagcttctg
     4381 tgttagtctt tacactgctc catgggatta aaggaggcaa tgacatcctg atctgttcct
     4441 tgatctttgt gcattggagc tggcgagagg tgttggaaca aggagaacat tctattgaaa
     4501 acaaggtcat aggatgagaa aaatctacaa gttttttatt tgcagcattg atgccccttt
     4561 ccctcccaca ccctgacatg gatgtttatg caacttgtgt atgttgttcc taaaccttct
     4621 gtaatgttta aattgtttaa tctgtcaaac taaaaaattt aacatcttct gaagaactgt
     4681 gacatcaaca ccataataag taatatccag gagcaactgc ctgtaatttt aatttattta
     4741 gggagttaca taggtgatgg gggaaattgt taattatctt tgcatttcct gggaagccaa
     4801 ggttaaatct tgcagaggta gttttgagaa aaaggagtcc ttctgcgtta aggagccatg
     4861 gttctaacaa tgattaaaag aacaaccaaa aaaaaaaaga gactgttaca gtgtgattta
     4921 gatcatttga aaaagcaaaa tcaagtgcaa ttttgtttac aaacggtgta tattaaagat
     4981 ttttctattt cagatgtact ttagagagaa atattagctt aactcttgac atctgctatt
     5041 gtgacacatc ccattgctgg caatgtggtg cacactccag aacttttaac tactgttttg
     5101 taagccttca agggcagcat tgcagagtcc taggcaatgc tttgcttgcc ttcatgcctt
     5161 ttactgggtg ttgcactaga tgcagaaagg cactctgtcg taagtgcatg tgagtgagca
     5221 ccctgttaaa gggattataa tgcttcagaa gcaggagcta atacaaagga aacaggtcct
     5281 tctggcttaa acagtttttt ctgcatgaaa tagtgtggag gccctggact gctgctcatt
     5341 ctttaggatc gactgttctt gtatctggtg ttggtttagg gatggtttat aagaaacatc
     5401 acaaggtgat gggattcatt tgaagcactg tatttgtttg aatgattttg tccaattttg
     5461 ccttcccaag attttttgtt ctacatagaa agttcatgcc actttttaat attaaaaaat
     5521 tttaacaaaa ttga
//
LOCUS       XM_032619166            2759 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus transglutaminase 1 (TGM1), mRNA.
ACCESSION   XM_032619166
VERSION     XM_032619166.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2759
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2759
                     /gene="TGM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747314"
     CDS             117..2570
                     /gene="TGM1"
                     /codon_start=1
                     /product="protein-glutamine gamma-glutamyltransferase K"
                     /protein_id="XP_032475057.1"
                     /db_xref="GeneID:116747314"
                     /translation="MPAPSSGTTTGSPRSDVGRWGGNPWQPLMTPSPEPEPEPDRHAR
                     QRRSSFWARCCGCCSCQNTIDEDRGPELGGDHGSNSRPPRPSPRDGRPNSPAPRPNSL
                     GSTVNTAIQEGKLMVTGVDLLSSPSGQNRQEHHTDEFEYKELIIRRGQPFHMVLFLSR
                     PYESSDHVTLELFIGNNPEVGKGTHVIIPVGQGGSGGWSAQVTKSSGKNLNLQVHTSP
                     NAIIGKFQFTVRTRSEAGEFQLPCDPCNEIYILFNPWCPEDLVYVDREDWRQEYVLNE
                     CGRIYYGTEAQIGERTWNYGQFDHGVLDACLYILDRRGMPYGGRRDPISVCRVVSAMV
                     NSLDDSGILIGNWSGEYSRGTNPSAWVGSVEILLSYLRTGFSVPYGQCWVFAGVTTTV
                     LRCLGLATRTITNFNSAHDTDTSLTMDIYFDENMKPLEHLNHDSVWNFHVWNDCWMKR
                     PDLPPGFDGWQVVDATPQETSSGIFCCGPCSVESIKNGLVYMKYDAPFIFAEVNSDKI
                     YWQRQGDGSFKIVYVEEKAIGSLVLTKAVGSNMREEVSHIYKHPEGSEAERKAVETAA
                     AHGSKPNVYAIQDSAEDVALKVEAQDVVMGQDLTICVVLTNCGSSPRTVKLHLYLSVT
                     FYTGVSGSVFKESKKEVVLAPGASERTAMPVAYKEYRVHLVDQGAMLLNVSGHVKENT
                     QVLAKQHTFRLRTPDLTLTLLQAAVVGQDCEVQIVFQNPLPITLTNVVFRLEGSGLQS
                     PKTLNAGDIEGNKRVTLRQTFVPVRPGSRQLIASLDSPQLSQVHGVIQVDVAPAAGGR
                     GSSDTRGNGSSEETIPIAS"
     misc_feature    474..812
                     /gene="TGM1"
                     /note="Transglutaminase family; Region: Transglut_N;
                     pfam00868"
                     /db_xref="CDD:459971"
     misc_feature    1239..1517
                     /gene="TGM1"
                     /note="Transglutaminase/protease-like homologues; Region:
                     TGc; smart00460"
                     /db_xref="CDD:214673"
     misc_feature    1866..2180
                     /gene="TGM1"
                     /note="Transglutaminase family, C-terminal ig like domain;
                     Region: Transglut_C; pfam00927"
                     /db_xref="CDD:460002"
     misc_feature    2202..2495
                     /gene="TGM1"
                     /note="Transglutaminase family, C-terminal ig like domain;
                     Region: Transglut_C; pfam00927"
                     /db_xref="CDD:460002"
ORIGIN      
        1 agaagcctgg ccccgccctc cgcctctcat aaaccactta ccggcctgcc ccacgctttc
       61 cattcgtgag gcggcgtcag tcccgtccca tcagtcccga cctgttccac ccagagatgc
      121 cagcaccttc gtcaggcacg acgacgggca gtcctcgttc agatgtgggc cgctggggag
      181 ggaatccctg gcagcccctc atgacacctt ctccagagcc ggagccagag ccagacagac
      241 atgctcgcca aaggcgcagc tccttctggg ctcgctgctg tggctgctgc tcgtgccaga
      301 atacaataga tgaggaccgg gggcctgagc tcggtggaga ccacgggtct aactccaggc
      361 ctccaaggcc cagccccagg gatggaagac ccaactcccc ggctccaaga cccaactccc
      421 tgggcagcac tgtgaacaca gccatccaag agggaaagct gatggtgact ggtgtggatc
      481 tgctgagttc accctcgggc cagaatcgcc aagagcacca cacggacgag ttcgagtaca
      541 aggagctgat tatccgccgt gggcagcctt tccacatggt cctcttcctg tctcgtccct
      601 atgagtcgtc cgatcatgtc accctggagc tgttcatcgg aaacaaccct gaggtgggca
      661 agggcaccca cgtgatcatc ccagtgggcc aggggggcag tggaggctgg agcgcccagg
      721 tgaccaagtc cagcgggaag aatctgaacc tacaggtcca cacctccccc aatgccatca
      781 tcggcaagtt tcagttcacg gtccgcacac gctcagaagc tggcgagttc cagttgccct
      841 gtgacccctg caatgagatc tacatcctct tcaatccctg gtgcccagag gaccttgtgt
      901 atgtggaccg tgaggactgg cggcaggagt acgtgcttaa tgagtgtggg agaatttact
      961 atgggaccga agcacagatt ggcgagcgga cctggaacta cggccagttt gaccacgggg
     1021 tgctggatgc ctgcctgtac atcctggacc ggcggggcat gccatatgga ggtcgcagag
     1081 accccatcag tgtctgccgg gtcgtctccg ccatggtaaa ctccttggat gacagtggca
     1141 tcctgatcgg gaactggtct ggagagtatt cccgcggcac gaatccatcg gcgtgggtgg
     1201 gcagcgtgga gattctactc agctacctac gcaccggctt ctctgtccct tacggccagt
     1261 gctgggtttt cgccggtgtg accactacag tgctgcgctg cctaggcctg gccacccgca
     1321 ccatcaccaa cttcaattcc gcgcatgaca cagacacgtc cctcaccatg gacatctact
     1381 ttgacgagaa catgaagcca ctcgagcacc tgaaccatga ttccgtctgg aacttccacg
     1441 tgtggaacga ctgttggatg aagaggccgg atctgccccc aggcttcgat ggatggcagg
     1501 ttgtggacgc cacaccccag gagaccagca gcggcatctt ctgctgtggc ccctgctctg
     1561 tggagtccat caagaacggc ctggtctaca tgaagtatga cgcacccttc atttttgctg
     1621 aggtgaacag tgacaagatc tactggcagc ggcaaggtga tggcagcttc aagatcgtgt
     1681 acgtggagga gaaagccatc ggctcgctcg tcctcacgaa ggctgtcggc tccaacatgc
     1741 gggaagaggt ctcccacatc tataagcacc cggaaggctc agaagcagag cggaaggcag
     1801 tggagaccgc agccgcccac ggcagcaaac ccaacgtgta cgccatccag gactcggctg
     1861 aggatgtggc cctgaaggtg gaggcgcagg acgtagtgat ggggcaggac ctgaccatct
     1921 gcgtggtgct gaccaactgt ggcagcagcc cccggactgt gaagctgcac ctctacctct
     1981 ccgttacctt ctataccggc gtctctgggt ctgtcttcaa ggaaagcaag aaggaagtgg
     2041 tgctggcgcc gggggcctcg gagcgcacgg ccatgcccgt ggcctacaag gagtaccggg
     2101 tccacctcgt ggaccagggg gccatgctgc tcaacgtctc gggccatgtc aaggagaaca
     2161 cgcaggtgct ggccaagcag cacaccttcc gtctgcgcac cccggacctc accctcacgt
     2221 tactgcaagc agccgtggtt ggccaggatt gcgaggttca gattgtcttc cagaaccccc
     2281 tgcctatcac cctcaccaac gttgtcttcc ggctcgaggg ttccgggttg cagagcccca
     2341 agaccctcaa cgctggggac attgagggca acaagagagt gacactgcgc cagacgttcg
     2401 tgcctgtgag accaggctcc cgccagctca tcgccagctt ggacagccca cagctctccc
     2461 aggttcatgg ggtcatccag gtggatgtgg ccccggccgc tggtggcagg ggctcctcag
     2521 atactagagg caacggtagc tcagaggaga ctatccctat tgcatcttga ggtggggctt
     2581 agccctgggc caggagcaat gcgagtggag tcagatgagc aagggcattg cctcaagaca
     2641 ggggcccgct gcagagcggt tccccagagc ctcaggtggg gagaccggga catctgggga
     2701 ggaactgatc tcatttgcac agatgctaat aaactgtttt acaatgaagc tgccgttct
//
LOCUS       XM_032619173            2119 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus NOP9 nucleolar protein (NOP9), mRNA.
ACCESSION   XM_032619173
VERSION     XM_032619173.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2119
                     /gene="NOP9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 2 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747317"
     CDS             100..2004
                     /gene="NOP9"
                     /codon_start=1
                     /product="nucleolar protein 9"
                     /protein_id="XP_032475064.1"
                     /db_xref="GeneID:116747317"
                     /translation="MGLVPRSPHQAGRRFPAGGKRGRGAKGSGRPPPGRQRQPCPPPD
                     GRSEPAPDAHPHLSPEALGYFRRALSALKEVPETGEERELMVHNVLKEVEAQALALAT
                     NRAGSEMLQELLGFSPLKPLCRVWAALRPNLRFVACHRCGVHVLQSALLQLPRLLGNP
                     AEEEEEEDGKDGPLETLEELGLGLAAEVCDDFLFYCGDTHGSFVVRTLLQVLGGTLLE
                     SERARHRGSQLPEAQRAPSRECKATDFEVPETFLNCLQNLSSCFLKDIAVFITDKISS
                     FCLQVALQILHRKLPQFCAHLCNAVMGYLSSRNSSADGSPLLLFLRDQTSSRLLEQVL
                     LVSEPPRLQSLFEDHFQGQLQTLAAHPIANFPLQRFLDAITTPELLSPVFEELSPALE
                     AVLAQGHSGVVIALVEACHRVGIHQAQVLQLLLEAFHCAEPSSRQVACVPLFATLMTY
                     EVYYGLAEEEGAVPAEHQVEMATARDLGEVTVLGSLLLQHLLHFSSPGIILRSLGALT
                     GPQLLTLAQSPAGSHVLDAVLTSPSVTRKQCRRVLKTLKGQYVALACSRHGSRVLDAI
                     WSGAALGARKEIAAELGARNQELIRDPFGHHVARNVALTTFLKRREAWEQQQGTVAKR
                     RRALNSILED"
     misc_feature    853..>1464
                     /gene="NOP9"
                     /note="Gamma tubulin complex component N-terminal; Region:
                     GCP_N_terminal; pfam17681"
                     /db_xref="CDD:465456"
     misc_feature    1048..>1893
                     /gene="NOP9"
                     /note="Pumilio-family RNA binding domain; Region: Pumilio;
                     cl46378"
                     /db_xref="CDD:480718"
ORIGIN      
        1 cgtgactaaa ctctgcccgg ccccggcccg tacgcgagtg gttgaggtgc cccctgcggc
       61 taaggaagcc tttgctggcg gagaggtgcc gaagcgctca tggggctggt tccgcgctcc
      121 ccccaccagg cggggcgccg gttccccgct ggtggcaaaa gagggcgcgg agccaagggc
      181 tcggggcgcc ccccaccagg ccgccagcga caaccctgcc cgcctccgga tgggcgctca
      241 gagccggctc cggatgcgca ccctcacctg agcccagaag ctctggggta tttccgccgg
      301 gcgctatccg cgctgaaaga ggtccccgag acgggagaag aacgagagct gatggtgcac
      361 aatgttttga aagaagtgga ggctcaggcc ctagccttgg ccacaaacag ggctggtagt
      421 gagatgctgc aggaactgtt ggggttcagt cccctgaaac cgctgtgtag agtatgggct
      481 gctctgcggc ccaacttgcg ctttgtggcc tgtcatcgat gtggggtcca tgtattgcaa
      541 agtgctttgc tgcagctgcc tcgattgcta gggaaccctg cagaggagga ggaggaggag
      601 gatgggaagg atggtccttt ggagaccctg gaggaactgg gcctgggact agccgctgag
      661 gtgtgtgatg attttctttt ctactgtgga gacacacatg gcagcttcgt ggtcagaact
      721 ttgctgcagg tattgggagg gactcttctg gagtctgaga gagccaggca ccgtggctcc
      781 cagttacctg aagcacaaag ggccccatct cgggaatgta aggcaaccga tttcgaggtc
      841 cctgaaacct tcttgaattg tcttcagaac ctgagctcct gctttctgaa ggacattgct
      901 gtgtttatca ctgacaagat ctccagcttc tgccttcaag tagccttaca gatcttacac
      961 cgcaagctgc cccagttttg tgcccacctc tgcaatgctg tgatgggcta cttgagtagc
     1021 cgcaattcct cagcagatgg cagtccccta ctgctatttc tgcgcgatca gacgagctcc
     1081 agactcctgg agcaggtgct gctggtgtcg gagcccccaa gactccagag cctctttgag
     1141 gatcacttcc aaggacagct gcagaccctg gctgcacatc ctattgctaa cttccctttg
     1201 cagcgtttcc tggatgctat caccactcct gagctgctgt cccccgtgtt tgaggagcta
     1261 agccctgccc tggaagctgt gctggctcag ggtcactcag gggtagtcat tgccctggtc
     1321 gaggcctgcc acagagttgg gatccaccaa gcccaggtcc tacagctgtt gttggaggcg
     1381 ttccactgtg cagagccctc ttcccggcaa gtggcctgtg tgcctctctt tgccactttg
     1441 atgacttatg aggtgtacta tggactggca gaggaggagg gggcagtgcc cgcagagcac
     1501 caggtggaaa tggccaccgc cagggacctg ggggaagtga cagtccttgg gtctctactg
     1561 ctccagcatt tgctgcactt ctccagtcct ggtattatac ttcgaagttt gggtgccttg
     1621 acaggaccac agcttctgac tctggcccaa agccctgctg gttcccatgt gcttgatgct
     1681 gtcctgacca gcccctccgt gacacgcaag cagtgccgcc gggtgctgaa gaccctaaag
     1741 ggacagtatg tggctctggc ctgtagtcgc cacggcagcc gtgtgcttga tgccatctgg
     1801 agtggggcag ccttgggggc ccggaaggaa attgctgctg agctgggggc gcggaaccag
     1861 gagctgataa gggacccttt tggccaccat gtagctcgaa acgtggccct gactaccttt
     1921 ctgaagcggc gagaggcttg ggaacagcag caggggacgg tggccaagcg gaggcgggcc
     1981 ttgaattcaa tacttgaaga ctaaggcctt tggatctggg actgggtgtt catggggcac
     2041 gaggaaacgg agtatcctgt cctgttccta gtttaaactg gagtcaaaag tcttattgat
     2101 aaacattttt atattttta
//
LOCUS       XM_032619187            1982 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rab geranylgeranyltransferase subunit
            alpha (RABGGTA), transcript variant X1, mRNA.
ACCESSION   XM_032619187
VERSION     XM_032619187.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1982
                     /gene="RABGGTA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 2 long SRA reads, 11
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747323"
     CDS             196..1899
                     /gene="RABGGTA"
                     /codon_start=1
                     /product="geranylgeranyl transferase type-2 subunit alpha
                     isoform X1"
                     /protein_id="XP_032475078.1"
                     /db_xref="GeneID:116747323"
                     /translation="MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQTVFQKRQAGEL
                     DESVLELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRV
                     NPKSYGTWHHRCWLLGRLPEANWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPP
                     AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNA
                     FFTDPNDQSAWFYHRWLLGRADPQDALHCLHVSRDEACLTVSFSRPLLVGSRTETLLL
                     LVDESPLAVAWRTPDGRNRPSHVWLCDLPATSLNDQLPQHTFRVIWTAGGAQKECVLL
                     KGRQEGWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM
                     RALDPLQYEKETLQYFQTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAEVRVLHLGH
                     KDLTVLCHLEQLLLITHLDLSHNRLRALPPALAALRCLEVLQANDNTIESLDGVTNLP
                     RLQELFLCNNRLQQPAVLQPLASCPRLVLLNLQGNPLCQAVGISEHLAELLPSVRSSL
                     T"
     misc_feature    196..>906
                     /gene="RABGGTA"
                     /note="Protein prenyltransferase, alpha subunit
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: BET4; COG5536"
                     /db_xref="CDD:227823"
     misc_feature    925..1233
                     /gene="RABGGTA"
                     /note="Rab geranylgeranyl transferase alpha-subunit,
                     insert domain; Region: RabGGT_insert; pfam07711"
                     /db_xref="CDD:462239"
     misc_feature    1522..1578
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    <1525..1836
                     /gene="RABGGTA"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     Region: PPP1R42; cl42388"
                     /db_xref="CDD:455733"
     misc_feature    1579..1656
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1657..1722
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1723..1797
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
ORIGIN      
        1 tctgccgcga gcccctcccc aggcctgcag agggcgctga gtctcggaga gccggggcgt
       61 gacgccactc tagctagcgc tggcgctcgg gctcggtggt gggcgccgta gctccgcgtc
      121 ccgcacgcct cctcccagca caggtttcac gggcaccact tgacccctac cctgccctga
      181 atctgagcca gcaccatgca cgggcgcctg aaggtgaaga catcggaaga gcaagcggaa
      241 gccaaaaggc tagagcggga acagaagctg aagctatacc agtcagccac ccagactgtc
      301 ttccagaagc gccaggctgg agagctagat gaatcagtgc tggaactgac aagccagatt
      361 ctgggagcca accctgattt tgccaccctc tggaattgtc gccgagaggt gctccagcgg
      421 ctggaggtcc agaagtcccc cgaggagttg gccgctctgg tgaaggcaga actgggcttc
      481 ctggagagct gtctgagggt gaaccccaag tcttacggta cctggcacca ccgctgctgg
      541 ctgctgggcc gcctgccaga ggccaactgg gcccgggagc tggagttgtg tgcccgcttc
      601 ctcgaggttg atgagcggaa ctttcactgc tgggactacc ggcggtttgt ggctgcgcag
      661 gcagctgtgc cccctgcaga ggagctagcc ttcactgaca gcctcatcac ccgaaacttc
      721 tccaactatt cctcctggca ttaccgctcc tgcctcttgc cccagctgca tccccagcca
      781 gactctggac ctcaggggcg cctccctgag gatgtgctgc tcaaagagct ggagctggtg
      841 cagaacgcct tcttcacgga ccccaatgat cagagtgcct ggttctacca tcgttggctc
      901 ctgggacgag cggatcccca ggatgctctg cactgcctgc acgtgagccg ggatgaggcc
      961 tgtctgactg tctccttctc tcggcccctc ctagtgggct ccaggacgga gaccttgctg
     1021 ctcttggtgg acgagtcacc cctggccgtg gcgtggagga ccccagatgg caggaaccgg
     1081 cctagccacg tctggctctg tgacctgccc gccacctctc tcaacgacca gttgccccaa
     1141 catacatttc gtgtcatttg gacagcaggc ggtgcccaga aggagtgtgt gctcttaaaa
     1201 ggccgccaag agggctggtg ccgggactcc gccacggatg aacagctctt caggtgtgag
     1261 ctgtcggtgg agaagtccac ggtgctacag tccgagcttg aatcctgtaa ggagctgcag
     1321 gagctggagc cagagaataa atggtgcctg ctcaccatca tcttgctgat gcgggcgctg
     1381 gaccccctgc agtatgagaa ggagacgctg cagtacttcc agaccctcaa ggccgtggac
     1441 cctatgcggg cagcgtacct ggacgacctg cgaagcaagt tcctgctgga gaacagcgtg
     1501 ctcaagatgg agtatgcgga ggtgcgcgtg ctgcaccttg gtcacaagga tctgacggtg
     1561 ctctgccatc tggagcagct gctcttgatc actcaccttg acctgtcgca caatcgtctc
     1621 cgagccctgc cccctgccct ggctgccctg cgctgcctcg aggtgctgca ggccaatgac
     1681 aacactatcg agtccctgga tggtgtcact aacctgcccc ggctgcagga gctctttctg
     1741 tgcaacaacc gcctccagca gcctgcagtg ctccagcctc tcgcctcctg ccccaggctg
     1801 gtcctcctca acctgcaggg caaccccctg tgccaagcag tgggcatctc ggagcatctg
     1861 gccgagctgc tgccttcagt tcgcagcagc ctcacctaag agactctgcc cccgccccct
     1921 gccctttaac ttattggaac tgaataaaca atgaagaggc ccccaaaggc tgctaagctg
     1981 cc
//
LOCUS       XM_032619195            2001 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rab geranylgeranyltransferase subunit
            alpha (RABGGTA), transcript variant X2, mRNA.
ACCESSION   XM_032619195
VERSION     XM_032619195.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2001
                     /gene="RABGGTA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 2 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747323"
     CDS             226..1929
                     /gene="RABGGTA"
                     /codon_start=1
                     /product="geranylgeranyl transferase type-2 subunit alpha
                     isoform X1"
                     /protein_id="XP_032475086.1"
                     /db_xref="GeneID:116747323"
                     /translation="MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQTVFQKRQAGEL
                     DESVLELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRV
                     NPKSYGTWHHRCWLLGRLPEANWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPP
                     AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNA
                     FFTDPNDQSAWFYHRWLLGRADPQDALHCLHVSRDEACLTVSFSRPLLVGSRTETLLL
                     LVDESPLAVAWRTPDGRNRPSHVWLCDLPATSLNDQLPQHTFRVIWTAGGAQKECVLL
                     KGRQEGWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM
                     RALDPLQYEKETLQYFQTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAEVRVLHLGH
                     KDLTVLCHLEQLLLITHLDLSHNRLRALPPALAALRCLEVLQANDNTIESLDGVTNLP
                     RLQELFLCNNRLQQPAVLQPLASCPRLVLLNLQGNPLCQAVGISEHLAELLPSVRSSL
                     T"
     misc_feature    226..>936
                     /gene="RABGGTA"
                     /note="Protein prenyltransferase, alpha subunit
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: BET4; COG5536"
                     /db_xref="CDD:227823"
     misc_feature    955..1263
                     /gene="RABGGTA"
                     /note="Rab geranylgeranyl transferase alpha-subunit,
                     insert domain; Region: RabGGT_insert; pfam07711"
                     /db_xref="CDD:462239"
     misc_feature    1552..1608
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    <1555..1866
                     /gene="RABGGTA"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     Region: PPP1R42; cl42388"
                     /db_xref="CDD:455733"
     misc_feature    1609..1686
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1687..1752
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    1753..1827
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
ORIGIN      
        1 agcacaggtg ggtccgccgg cgggggccag cagtgcttgg gatccgtggg gcgggcgggt
       61 agcgacagcc tctgggcgcg gagtagtccc catcacctaa gtgctccagc tcgggccagg
      121 ctccggcgaa tcgggctgtg gacagggctg cacgtgtgca agtcccattc cgggtttcac
      181 gggcaccact tgacccctac cctgccctga atctgagcca gcaccatgca cgggcgcctg
      241 aaggtgaaga catcggaaga gcaagcggaa gccaaaaggc tagagcggga acagaagctg
      301 aagctatacc agtcagccac ccagactgtc ttccagaagc gccaggctgg agagctagat
      361 gaatcagtgc tggaactgac aagccagatt ctgggagcca accctgattt tgccaccctc
      421 tggaattgtc gccgagaggt gctccagcgg ctggaggtcc agaagtcccc cgaggagttg
      481 gccgctctgg tgaaggcaga actgggcttc ctggagagct gtctgagggt gaaccccaag
      541 tcttacggta cctggcacca ccgctgctgg ctgctgggcc gcctgccaga ggccaactgg
      601 gcccgggagc tggagttgtg tgcccgcttc ctcgaggttg atgagcggaa ctttcactgc
      661 tgggactacc ggcggtttgt ggctgcgcag gcagctgtgc cccctgcaga ggagctagcc
      721 ttcactgaca gcctcatcac ccgaaacttc tccaactatt cctcctggca ttaccgctcc
      781 tgcctcttgc cccagctgca tccccagcca gactctggac ctcaggggcg cctccctgag
      841 gatgtgctgc tcaaagagct ggagctggtg cagaacgcct tcttcacgga ccccaatgat
      901 cagagtgcct ggttctacca tcgttggctc ctgggacgag cggatcccca ggatgctctg
      961 cactgcctgc acgtgagccg ggatgaggcc tgtctgactg tctccttctc tcggcccctc
     1021 ctagtgggct ccaggacgga gaccttgctg ctcttggtgg acgagtcacc cctggccgtg
     1081 gcgtggagga ccccagatgg caggaaccgg cctagccacg tctggctctg tgacctgccc
     1141 gccacctctc tcaacgacca gttgccccaa catacatttc gtgtcatttg gacagcaggc
     1201 ggtgcccaga aggagtgtgt gctcttaaaa ggccgccaag agggctggtg ccgggactcc
     1261 gccacggatg aacagctctt caggtgtgag ctgtcggtgg agaagtccac ggtgctacag
     1321 tccgagcttg aatcctgtaa ggagctgcag gagctggagc cagagaataa atggtgcctg
     1381 ctcaccatca tcttgctgat gcgggcgctg gaccccctgc agtatgagaa ggagacgctg
     1441 cagtacttcc agaccctcaa ggccgtggac cctatgcggg cagcgtacct ggacgacctg
     1501 cgaagcaagt tcctgctgga gaacagcgtg ctcaagatgg agtatgcgga ggtgcgcgtg
     1561 ctgcaccttg gtcacaagga tctgacggtg ctctgccatc tggagcagct gctcttgatc
     1621 actcaccttg acctgtcgca caatcgtctc cgagccctgc cccctgccct ggctgccctg
     1681 cgctgcctcg aggtgctgca ggccaatgac aacactatcg agtccctgga tggtgtcact
     1741 aacctgcccc ggctgcagga gctctttctg tgcaacaacc gcctccagca gcctgcagtg
     1801 ctccagcctc tcgcctcctg ccccaggctg gtcctcctca acctgcaggg caaccccctg
     1861 tgccaagcag tgggcatctc ggagcatctg gccgagctgc tgccttcagt tcgcagcagc
     1921 ctcacctaag agactctgcc cccgccccct gccctttaac ttattggaac tgaataaaca
     1981 atgaagaggc ccccaaaggc t
//
LOCUS       XM_032619205            1821 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rab geranylgeranyltransferase subunit
            alpha (RABGGTA), transcript variant X3, mRNA.
ACCESSION   XM_032619205
VERSION     XM_032619205.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1821
                     /gene="RABGGTA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747323"
     CDS             164..1753
                     /gene="RABGGTA"
                     /codon_start=1
                     /product="geranylgeranyl transferase type-2 subunit alpha
                     isoform X2"
                     /protein_id="XP_032475096.1"
                     /db_xref="GeneID:116747323"
                     /translation="MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQTVFQKRQAGEL
                     DESVLELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRV
                     NPKSYGTWHHRCWLLGRLPEANWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPP
                     AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNA
                     FFTDPNDQSAWFYHRWLLGRADPQDALHCLHVSRDEACLTVSFSRPLLVGSRTETLLL
                     LVDESPLAVAWRTPDGRNRPSHVWLCDLPATSLNDQLPQHTFRVIWTAGGAQKECVLL
                     KGRQEGWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM
                     RALDPLQYEKETLQYFQTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAEVRVLHLGH
                     KVLQANDNTIESLDGVTNLPRLQELFLCNNRLQQPAVLQPLASCPRLVLLNLQGNPLC
                     QAVGISEHLAELLPSVRSSLT"
     misc_feature    164..>874
                     /gene="RABGGTA"
                     /note="Protein prenyltransferase, alpha subunit
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: BET4; COG5536"
                     /db_xref="CDD:227823"
     misc_feature    893..1201
                     /gene="RABGGTA"
                     /note="Rab geranylgeranyl transferase alpha-subunit,
                     insert domain; Region: RabGGT_insert; pfam07711"
                     /db_xref="CDD:462239"
     misc_feature    1241..>1723
                     /gene="RABGGTA"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    1493..1576
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    <1514..1690
                     /gene="RABGGTA"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     Region: PPP1R42; cl42388"
                     /db_xref="CDD:455733"
     misc_feature    1577..1651
                     /gene="RABGGTA"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
ORIGIN      
        1 ggcgctgagt ctcggagagc cggggcgtga cgccactcta gctagcgctg gcgctcgggc
       61 tcggtggtgg gcgccgtagc tccgcgtccc gcacgcctcc tcccagcaca ggtttcacgg
      121 gcaccacttg acccctaccc tgccctgaat ctgagccagc accatgcacg ggcgcctgaa
      181 ggtgaagaca tcggaagagc aagcggaagc caaaaggcta gagcgggaac agaagctgaa
      241 gctataccag tcagccaccc agactgtctt ccagaagcgc caggctggag agctagatga
      301 atcagtgctg gaactgacaa gccagattct gggagccaac cctgattttg ccaccctctg
      361 gaattgtcgc cgagaggtgc tccagcggct ggaggtccag aagtcccccg aggagttggc
      421 cgctctggtg aaggcagaac tgggcttcct ggagagctgt ctgagggtga accccaagtc
      481 ttacggtacc tggcaccacc gctgctggct gctgggccgc ctgccagagg ccaactgggc
      541 ccgggagctg gagttgtgtg cccgcttcct cgaggttgat gagcggaact ttcactgctg
      601 ggactaccgg cggtttgtgg ctgcgcaggc agctgtgccc cctgcagagg agctagcctt
      661 cactgacagc ctcatcaccc gaaacttctc caactattcc tcctggcatt accgctcctg
      721 cctcttgccc cagctgcatc cccagccaga ctctggacct caggggcgcc tccctgagga
      781 tgtgctgctc aaagagctgg agctggtgca gaacgccttc ttcacggacc ccaatgatca
      841 gagtgcctgg ttctaccatc gttggctcct gggacgagcg gatccccagg atgctctgca
      901 ctgcctgcac gtgagccggg atgaggcctg tctgactgtc tccttctctc ggcccctcct
      961 agtgggctcc aggacggaga ccttgctgct cttggtggac gagtcacccc tggccgtggc
     1021 gtggaggacc ccagatggca ggaaccggcc tagccacgtc tggctctgtg acctgcccgc
     1081 cacctctctc aacgaccagt tgccccaaca tacatttcgt gtcatttgga cagcaggcgg
     1141 tgcccagaag gagtgtgtgc tcttaaaagg ccgccaagag ggctggtgcc gggactccgc
     1201 cacggatgaa cagctcttca ggtgtgagct gtcggtggag aagtccacgg tgctacagtc
     1261 cgagcttgaa tcctgtaagg agctgcagga gctggagcca gagaataaat ggtgcctgct
     1321 caccatcatc ttgctgatgc gggcgctgga ccccctgcag tatgagaagg agacgctgca
     1381 gtacttccag accctcaagg ccgtggaccc tatgcgggca gcgtacctgg acgacctgcg
     1441 aagcaagttc ctgctggaga acagcgtgct caagatggag tatgcggagg tgcgcgtgct
     1501 gcaccttggt cacaaggtgc tgcaggccaa tgacaacact atcgagtccc tggatggtgt
     1561 cactaacctg ccccggctgc aggagctctt tctgtgcaac aaccgcctcc agcagcctgc
     1621 agtgctccag cctctcgcct cctgccccag gctggtcctc ctcaacctgc agggcaaccc
     1681 cctgtgccaa gcagtgggca tctcggagca tctggccgag ctgctgcctt cagttcgcag
     1741 cagcctcacc taagagactc tgcccccgcc ccctgccctt taacttattg gaactgaata
     1801 aacaatgaag aggcccccaa a
//
LOCUS       XR_004347988            1689 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rab geranylgeranyltransferase subunit
            alpha (RABGGTA), transcript variant X4, misc_RNA.
ACCESSION   XR_004347988
VERSION     XR_004347988.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1689
                     /gene="RABGGTA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747323"
     misc_RNA        1..1689
                     /gene="RABGGTA"
                     /product="Rab geranylgeranyltransferase subunit alpha,
                     transcript variant X4"
                     /db_xref="GeneID:116747323"
ORIGIN      
        1 tctcggagag ccggggcgtg acgccactct agctagcgct ggcgctcggg ctcggtggtg
       61 ggcgccgtag ctccgcgtcc cgcacgcctc ctcccagcac aggtttcacg ggcaccactt
      121 gacccctacc ctgccctgaa tctgagccag caccatgcac gggcgcctga aggtgaagac
      181 atcggaagag caagcggaag ccaaaaggct agagcgggaa cagaagctga agctatacca
      241 gtcagccacc cagactgtct tccagaagcg ccaggctgga gagctagatg aatcagtgct
      301 ggaactgaca agccagattc tgggagccaa ccctgatttt gccaccctct ggaattgtcg
      361 ccgagaggtg ctccagcggc tggaggtcca gaagtccccc gaggagttgg ccgctctggt
      421 gaaggcagaa ctgggcttcc tggagagctg tctgagggtg aaccccaagt cttacggtac
      481 ctggcaccac cgctgctggc tgctgggccg cctgccagag gccaactggg cccgggagct
      541 ggagttgtgt gcccgcttcc tcgaggttga tgagcggaac tttcactgct gggactaccg
      601 gcggtttgtg gctgcgcagg cagctgtgcc ccctgcagag gagctagcct tcactgacag
      661 cctcatcacc cgaaacttct ccaactattc ctcctggcat taccgctcct gcctcttgcc
      721 ccagctgcat ccccagccag actctggacc tcaggggcgc ctccctgagg atgtgctgct
      781 caaagagctg gagctggtgc agaacgcctt cttcacggac cccaatgatc agagtgcctg
      841 gttctaccat cgttggctcc tgggacgagc ggatccccag gatgctctgc actgcctgca
      901 cgtgagccgg gatgaggcct gtctgactgt ctccttctct cggcccctcc tagtgggctc
      961 caggacggag accttgctgc tcttggtgga cgagtcaccc ctggccgtgg cgtggaggac
     1021 cccagatggc aggaaccggc ctagccacgt ctggctctgt gacctgcccg ccacctctct
     1081 caacgaccag ttgccccaac atacatttcg tgtcatttgg acagcaggcg gtgcccagaa
     1141 ggagtgtgtg ctcttaaaag gccgccaaga gggctggtgc cgggactccg ccacggatga
     1201 acagctcttc aggtgtgagc tgtcggtgga gaagtccacg gtgctacagt ccgagcttga
     1261 atcctgtaag gagctgcagg agctggagcc agagaataaa tggtgcctgc tcaccatcat
     1321 cttgctgatg cgggcgctgg accccctgca gtatgagaag gagacgctgc agtacttcca
     1381 gaccctcaag gccgtggacc ctatgcgggc agcgtacctg gacgacctgc gaagcaagtt
     1441 cctgctggag aacagcgtgc tcaagatgga gtatgcggag gtgcgcgtgc tgcaccttgg
     1501 tcacaaggtc ttgctgggta tctcatcccc cctcctcagg atctgacggt gctctgccat
     1561 ctggagcagc tgctcttgat cactcacctt gacctgtcgc acaatcgtct ccgagccctg
     1621 ccccctgccc tggctgccct gcgctgcctc gaggtgctgc aggccaatga caacactatc
     1681 gagtccctg
//
LOCUS       XM_032619220            1681 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Rab geranylgeranyltransferase subunit
            alpha (RABGGTA), transcript variant X5, mRNA.
ACCESSION   XM_032619220
VERSION     XM_032619220.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1681
                     /gene="RABGGTA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747323"
     CDS             155..1546
                     /gene="RABGGTA"
                     /codon_start=1
                     /product="geranylgeranyl transferase type-2 subunit alpha
                     isoform X3"
                     /protein_id="XP_032475111.1"
                     /db_xref="GeneID:116747323"
                     /translation="MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQTVFQKRQAGEL
                     DESVLELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRV
                     NPKSYGTWHHRCWLLGRLPEANWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPP
                     AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNA
                     FFTDPNDQSAWFYHRWLLGRADPQDALHCLHVSRDEACLTVSFSRPLLVGSRTETLLL
                     LVDESPLAVAWRTPDGRNRPSHVWLCDLPATSLNDQLPQHTFRVIWTAGGAQKECVLL
                     KGRQEGWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM
                     RALDPLQYEKETLQYFQTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAEVRVLHLGH
                     KVLLGISSPLLRI"
     misc_feature    155..>865
                     /gene="RABGGTA"
                     /note="Protein prenyltransferase, alpha subunit
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: BET4; COG5536"
                     /db_xref="CDD:227823"
     misc_feature    884..1192
                     /gene="RABGGTA"
                     /note="Rab geranylgeranyl transferase alpha-subunit,
                     insert domain; Region: RabGGT_insert; pfam07711"
                     /db_xref="CDD:462239"
ORIGIN      
        1 tctcggagag ccggggcgtg acgccactct agctagcgct ggcgctcggg ctcggtggtg
       61 ggcgccgtag ctccgcgtcc cgcacgcctc ctcccagcac aggtttcacg ggcaccactt
      121 gacccctacc ctgccctgaa tctgagccag caccatgcac gggcgcctga aggtgaagac
      181 atcggaagag caagcggaag ccaaaaggct agagcgggaa cagaagctga agctatacca
      241 gtcagccacc cagactgtct tccagaagcg ccaggctgga gagctagatg aatcagtgct
      301 ggaactgaca agccagattc tgggagccaa ccctgatttt gccaccctct ggaattgtcg
      361 ccgagaggtg ctccagcggc tggaggtcca gaagtccccc gaggagttgg ccgctctggt
      421 gaaggcagaa ctgggcttcc tggagagctg tctgagggtg aaccccaagt cttacggtac
      481 ctggcaccac cgctgctggc tgctgggccg cctgccagag gccaactggg cccgggagct
      541 ggagttgtgt gcccgcttcc tcgaggttga tgagcggaac tttcactgct gggactaccg
      601 gcggtttgtg gctgcgcagg cagctgtgcc ccctgcagag gagctagcct tcactgacag
      661 cctcatcacc cgaaacttct ccaactattc ctcctggcat taccgctcct gcctcttgcc
      721 ccagctgcat ccccagccag actctggacc tcaggggcgc ctccctgagg atgtgctgct
      781 caaagagctg gagctggtgc agaacgcctt cttcacggac cccaatgatc agagtgcctg
      841 gttctaccat cgttggctcc tgggacgagc ggatccccag gatgctctgc actgcctgca
      901 cgtgagccgg gatgaggcct gtctgactgt ctccttctct cggcccctcc tagtgggctc
      961 caggacggag accttgctgc tcttggtgga cgagtcaccc ctggccgtgg cgtggaggac
     1021 cccagatggc aggaaccggc ctagccacgt ctggctctgt gacctgcccg ccacctctct
     1081 caacgaccag ttgccccaac atacatttcg tgtcatttgg acagcaggcg gtgcccagaa
     1141 ggagtgtgtg ctcttaaaag gccgccaaga gggctggtgc cgggactccg ccacggatga
     1201 acagctcttc aggtgtgagc tgtcggtgga gaagtccacg gtgctacagt ccgagcttga
     1261 atcctgtaag gagctgcagg agctggagcc agagaataaa tggtgcctgc tcaccatcat
     1321 cttgctgatg cgggcgctgg accccctgca gtatgagaag gagacgctgc agtacttcca
     1381 gaccctcaag gccgtggacc ctatgcgggc agcgtacctg gacgacctgc gaagcaagtt
     1441 cctgctggag aacagcgtgc tcaagatgga gtatgcggag gtgcgcgtgc tgcaccttgg
     1501 tcacaaggtc ttgctgggta tctcatcccc cctcctcagg atctgacggt gctctgccat
     1561 ctggagcagc tgctcttgat cactcacctt gacctgtcgc acaatcgtct ccgagccctg
     1621 ccccctgccc tggctgccct gcgctgcctc gaggtagagc actcactcct gtgtcgctgt
     1681 c
//
LOCUS       XM_032619235            1225 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leukotriene B4 receptor 2 (LTB4R2),
            transcript variant X1, mRNA.
ACCESSION   XM_032619235
VERSION     XM_032619235.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1225
                     /gene="LTB4R2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 72% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747332"
     CDS             93..1160
                     /gene="LTB4R2"
                     /codon_start=1
                     /product="leukotriene B4 receptor 2"
                     /protein_id="XP_032475126.1"
                     /db_xref="GeneID:116747332"
                     /translation="MSVCYGPPGNETLLSWKTSRVTGTAFLLLAALLGLPGNGFVVWS
                     LAGWRPARGRPLAATLVLHLALADGSVLLLTPLFVTFLTRQAWPLGQAGCKAVYYVCA
                     LSMYASVLLTGLLSLQRCLAVTRPFLAPRLRSPVLARRLLLAVWLAALVLASPAAVYR
                     HLWADRVCQLCHPSPAHAAAHLSLETLTAFVLPFGLVLGCYGVTLVRLRGTRWGARRH
                     GARVGRLVGAIVLAFGLLWAPYHAVNVLQALAALAPPEGALASLGGAGQAARAGTTAL
                     AFFSSSVNPLLYLFTAGDLLPRAGPRFLTRLFEGSGEARWGVQSRVGAMELRASPRLK
                     VLGQGRGNGDPGGGAERDSQG"
     misc_feature    153..992
                     /gene="LTB4R2"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    159..233
                     /gene="LTB4R2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320250"
     misc_feature    264..329
                     /gene="LTB4R2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320250"
     misc_feature    375..443
                     /gene="LTB4R2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320250"
     misc_feature    510..560
                     /gene="LTB4R2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320250"
     misc_feature    627..698
                     /gene="LTB4R2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320250"
     misc_feature    759..827
                     /gene="LTB4R2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320250"
     misc_feature    891..968
                     /gene="LTB4R2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320250"
ORIGIN      
        1 cccaaatcgg agctcatact ggttactgac ctggtaggtg ggaagaaagg tcaagaagga
       61 gtgaggggtt tgcctcccgt aggcgcctag ggatgtcggt ctgctacggt cccccgggga
      121 acgagacgct gctgagctgg aaaacctcgc gggtcacagg cacggccttc ctgctgctgg
      181 cggcgctgct ggggctgcct ggcaacggct tcgtggtgtg gagcttggcg ggctggcggc
      241 ccgcacgggg gcgaccgctg gcggccacgc tcgtgctgca cctggcgctg gccgacggct
      301 cggtgctgct gctcacgccg ctcttcgtga ccttcctgac ccggcaggcc tggccgctgg
      361 gccaggcggg ctgcaaggcc gtgtactacg tgtgcgcgct cagcatgtac gccagcgtgc
      421 tgctcaccgg cctgctcagc ctgcagcgct gcctcgccgt cacccgcccc ttcctggcgc
      481 cccggctgcg cagcccggtc ctggcccgcc gcctgctgct ggccgtctgg ctggccgccc
      541 tggtgctcgc cagcccggcc gccgtgtacc gccacctctg ggcggaccgc gtgtgccagc
      601 tgtgccaccc gtcgcccgcc cacgccgccg cccacctgag cctggagacc ctgaccgcct
      661 tcgtgctgcc cttcgggctg gtgctcggtt gctacggcgt gacgctggtg cggctgcggg
      721 gcacccgctg gggcgccagg cggcacgggg cgcgggtggg ccggctggtg ggcgccatcg
      781 tgctggcctt tggcttgctc tgggccccct accacgctgt caacgtgctg caggcgctcg
      841 ccgcgctggc tccgcccgaa ggagccttgg cgagcctggg cggggcgggc caggcggcgc
      901 gagccggaac cacggctctg gccttcttca gctccagcgt caacccgctg ctctacctct
      961 tcaccgccgg ggatctactg ccccgggcgg gtccccgctt cctcacgcgg ctcttcgagg
     1021 gctccggaga ggcccgatgg ggcgtccagt ctagggtggg ggccatggag ctccgagcta
     1081 gccctcggct caaagtgctg gggcagggcc gtggcaatgg agaccctggg ggcggggcgg
     1141 agagggacag tcagggatga ggtccttgac gtcaaaccct acaaccgggc ctgctctccc
     1201 ctatcccctt acatcgcctc ccaga
//
LOCUS       XM_032619245            1222 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leukotriene B4 receptor 2 (LTB4R2),
            transcript variant X2, mRNA.
ACCESSION   XM_032619245
VERSION     XM_032619245.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1222
                     /gene="LTB4R2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 72% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747332"
     CDS             90..1157
                     /gene="LTB4R2"
                     /codon_start=1
                     /product="leukotriene B4 receptor 2"
                     /protein_id="XP_032475136.1"
                     /db_xref="GeneID:116747332"
                     /translation="MSVCYGPPGNETLLSWKTSRVTGTAFLLLAALLGLPGNGFVVWS
                     LAGWRPARGRPLAATLVLHLALADGSVLLLTPLFVTFLTRQAWPLGQAGCKAVYYVCA
                     LSMYASVLLTGLLSLQRCLAVTRPFLAPRLRSPVLARRLLLAVWLAALVLASPAAVYR
                     HLWADRVCQLCHPSPAHAAAHLSLETLTAFVLPFGLVLGCYGVTLVRLRGTRWGARRH
                     GARVGRLVGAIVLAFGLLWAPYHAVNVLQALAALAPPEGALASLGGAGQAARAGTTAL
                     AFFSSSVNPLLYLFTAGDLLPRAGPRFLTRLFEGSGEARWGVQSRVGAMELRASPRLK
                     VLGQGRGNGDPGGGAERDSQG"
     misc_feature    150..989
                     /gene="LTB4R2"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    156..230
                     /gene="LTB4R2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320250"
     misc_feature    261..326
                     /gene="LTB4R2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320250"
     misc_feature    372..440
                     /gene="LTB4R2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320250"
     misc_feature    507..557
                     /gene="LTB4R2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320250"
     misc_feature    624..695
                     /gene="LTB4R2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320250"
     misc_feature    756..824
                     /gene="LTB4R2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320250"
     misc_feature    888..965
                     /gene="LTB4R2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320250"
ORIGIN      
        1 cgcgggggtg gtggagccga ggtccagacc ttacggccca aatcggagct catactggtt
       61 actgacctgc ctcccgtagg cgcctaggga tgtcggtctg ctacggtccc ccggggaacg
      121 agacgctgct gagctggaaa acctcgcggg tcacaggcac ggccttcctg ctgctggcgg
      181 cgctgctggg gctgcctggc aacggcttcg tggtgtggag cttggcgggc tggcggcccg
      241 cacgggggcg accgctggcg gccacgctcg tgctgcacct ggcgctggcc gacggctcgg
      301 tgctgctgct cacgccgctc ttcgtgacct tcctgacccg gcaggcctgg ccgctgggcc
      361 aggcgggctg caaggccgtg tactacgtgt gcgcgctcag catgtacgcc agcgtgctgc
      421 tcaccggcct gctcagcctg cagcgctgcc tcgccgtcac ccgccccttc ctggcgcccc
      481 ggctgcgcag cccggtcctg gcccgccgcc tgctgctggc cgtctggctg gccgccctgg
      541 tgctcgccag cccggccgcc gtgtaccgcc acctctgggc ggaccgcgtg tgccagctgt
      601 gccacccgtc gcccgcccac gccgccgccc acctgagcct ggagaccctg accgccttcg
      661 tgctgccctt cgggctggtg ctcggttgct acggcgtgac gctggtgcgg ctgcggggca
      721 cccgctgggg cgccaggcgg cacggggcgc gggtgggccg gctggtgggc gccatcgtgc
      781 tggcctttgg cttgctctgg gccccctacc acgctgtcaa cgtgctgcag gcgctcgccg
      841 cgctggctcc gcccgaagga gccttggcga gcctgggcgg ggcgggccag gcggcgcgag
      901 ccggaaccac ggctctggcc ttcttcagct ccagcgtcaa cccgctgctc tacctcttca
      961 ccgccgggga tctactgccc cgggcgggtc cccgcttcct cacgcggctc ttcgagggct
     1021 ccggagaggc ccgatggggc gtccagtcta gggtgggggc catggagctc cgagctagcc
     1081 ctcggctcaa agtgctgggg cagggccgtg gcaatggaga ccctgggggc ggggcggaga
     1141 gggacagtca gggatgaggt ccttgacgtc aaaccctaca accgggcctg ctctccccta
     1201 tccccttaca tcgcctccca ga
//
LOCUS       XM_032619255            1202 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus leukotriene B4 receptor 2 (LTB4R2),
            transcript variant X3, mRNA.
ACCESSION   XM_032619255
VERSION     XM_032619255.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1202
                     /gene="LTB4R2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 71% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747332"
     CDS             70..1137
                     /gene="LTB4R2"
                     /codon_start=1
                     /product="leukotriene B4 receptor 2"
                     /protein_id="XP_032475146.1"
                     /db_xref="GeneID:116747332"
                     /translation="MSVCYGPPGNETLLSWKTSRVTGTAFLLLAALLGLPGNGFVVWS
                     LAGWRPARGRPLAATLVLHLALADGSVLLLTPLFVTFLTRQAWPLGQAGCKAVYYVCA
                     LSMYASVLLTGLLSLQRCLAVTRPFLAPRLRSPVLARRLLLAVWLAALVLASPAAVYR
                     HLWADRVCQLCHPSPAHAAAHLSLETLTAFVLPFGLVLGCYGVTLVRLRGTRWGARRH
                     GARVGRLVGAIVLAFGLLWAPYHAVNVLQALAALAPPEGALASLGGAGQAARAGTTAL
                     AFFSSSVNPLLYLFTAGDLLPRAGPRFLTRLFEGSGEARWGVQSRVGAMELRASPRLK
                     VLGQGRGNGDPGGGAERDSQG"
     misc_feature    130..969
                     /gene="LTB4R2"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    136..210
                     /gene="LTB4R2"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320250"
     misc_feature    241..306
                     /gene="LTB4R2"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320250"
     misc_feature    352..420
                     /gene="LTB4R2"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320250"
     misc_feature    487..537
                     /gene="LTB4R2"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320250"
     misc_feature    604..675
                     /gene="LTB4R2"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320250"
     misc_feature    736..804
                     /gene="LTB4R2"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320250"
     misc_feature    868..945
                     /gene="LTB4R2"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320250"
ORIGIN      
        1 gcttccccag gcccctggag ggcccccaac cctgctcgct cccagctggc ctcccgtagg
       61 cgcctaggga tgtcggtctg ctacggtccc ccggggaacg agacgctgct gagctggaaa
      121 acctcgcggg tcacaggcac ggccttcctg ctgctggcgg cgctgctggg gctgcctggc
      181 aacggcttcg tggtgtggag cttggcgggc tggcggcccg cacgggggcg accgctggcg
      241 gccacgctcg tgctgcacct ggcgctggcc gacggctcgg tgctgctgct cacgccgctc
      301 ttcgtgacct tcctgacccg gcaggcctgg ccgctgggcc aggcgggctg caaggccgtg
      361 tactacgtgt gcgcgctcag catgtacgcc agcgtgctgc tcaccggcct gctcagcctg
      421 cagcgctgcc tcgccgtcac ccgccccttc ctggcgcccc ggctgcgcag cccggtcctg
      481 gcccgccgcc tgctgctggc cgtctggctg gccgccctgg tgctcgccag cccggccgcc
      541 gtgtaccgcc acctctgggc ggaccgcgtg tgccagctgt gccacccgtc gcccgcccac
      601 gccgccgccc acctgagcct ggagaccctg accgccttcg tgctgccctt cgggctggtg
      661 ctcggttgct acggcgtgac gctggtgcgg ctgcggggca cccgctgggg cgccaggcgg
      721 cacggggcgc gggtgggccg gctggtgggc gccatcgtgc tggcctttgg cttgctctgg
      781 gccccctacc acgctgtcaa cgtgctgcag gcgctcgccg cgctggctcc gcccgaagga
      841 gccttggcga gcctgggcgg ggcgggccag gcggcgcgag ccggaaccac ggctctggcc
      901 ttcttcagct ccagcgtcaa cccgctgctc tacctcttca ccgccgggga tctactgccc
      961 cgggcgggtc cccgcttcct cacgcggctc ttcgagggct ccggagaggc ccgatggggc
     1021 gtccagtcta gggtgggggc catggagctc cgagctagcc ctcggctcaa agtgctgggg
     1081 cagggccgtg gcaatggaga ccctgggggc ggggcggaga gggacagtca gggatgaggt
     1141 ccttgacgtc aaaccctaca accgggcctg ctctccccta tccccttaca tcgcctccca
     1201 ga
//
LOCUS       XM_032619269            1675 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 1 (DHRS1),
            transcript variant X1, mRNA.
ACCESSION   XM_032619269
VERSION     XM_032619269.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1675
                     /gene="DHRS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 6 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747339"
     CDS             481..1422
                     /gene="DHRS1"
                     /codon_start=1
                     /product="dehydrogenase/reductase SDR family member 1"
                     /protein_id="XP_032475160.1"
                     /db_xref="GeneID:116747339"
                     /translation="MPAPMKGQVCVVTGASRGIGRGIALQLCQAGATVYITGRNLDTL
                     QATAQEAQSRGGRCVPVVCDSSQESEVRSLFEQVDQEQQGRLDVLVNNAYAGVQAILN
                     NTKKAFWESPASIWDDINNVGLRGHYLCSVYGARLMVPAGRGLIVVISSIGGLQYFFN
                     VPYGVGKAACDRLAADCAQELRRHGVSYVSLWPGLVQTELLKEHVMKEENTADPLVEQ
                     FKFRFSSAETTEMSGKCVVALATDPNILSLSGKVLPSCDLARRYGLQDVDGRPVQDYL
                     SLSSALSHVSSLGWLASYLPGFLRVPKWVMTLYASKF"
     misc_feature    493..1293
                     /gene="DHRS1"
                     /note="human dehydrogenase/reductase (SDR family) member 1
                     (DHRS1) -like, classical (c) SDRs; Region:
                     DHRS1-like_SDR_c; cd09763"
                     /db_xref="CDD:187664"
     misc_feature    order(520..522,526..537,592..600,610..612,667..675,
                     754..762,844..846,925..927,967..969,979..981,1054..1056,
                     1066..1071,1075..1077,1159..1164)
                     /gene="DHRS1"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:187664"
     misc_feature    order(682..684,811..813,817..819,826..831,838..840,
                     853..855,862..864,874..876,883..885,937..939,943..945,
                     949..951,961..963,973..975,994..999,1003..1011,1015..1020)
                     /gene="DHRS1"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:187664"
     misc_feature    order(847..849,931..933,967..969,979..981)
                     /gene="DHRS1"
                     /note="active site"
                     /db_xref="CDD:187664"
ORIGIN      
        1 gggagtggct gtttcgggat cgcccagctc tcgcttgcca gtgctggctc ctaccggtca
       61 ttgccccggg cccgcggggt actctttgat cctcccctcc gcgtcgccag cggaaactgg
      121 gtcagaacgc ggacttccac cccagcctcg tactctgacc ccgtagttgt cacctcgtcc
      181 cgctcccgcg gccagaatta aagtcttcga cttcgagaac tttgcgaacg aggcggcgcg
      241 agaactccag cagtagtaca cgtggccggt aaggggcgcc agcgccctcc acttcgggct
      301 cggggtccct tggcctcgcg cctacccccg acccggaagt ctcgcctccg gaccagcggc
      361 cagtgctcca gagagctcag gactccgcgt ggacgcgctg ggagggaccg ccccgctaca
      421 gtctcccacc cagttagccc cactcagaaa gtctcaattt aaccccttct cttgtgagtc
      481 atgccagctc ccatgaaggg ccaggtgtgc gtggttactg gtgcttccag gggtattggc
      541 cggggcatcg ctttgcagct ctgccaagca ggtgccacag tttacatcac tggccgcaat
      601 ctggacacac tgcaggccac tgctcaggag gcacaatccc gagggggccg gtgtgtgccc
      661 gtggtgtgtg attcaagcca ggagagtgaa gtgcgaagcc tgtttgagca ggtggatcaa
      721 gaacagcagg ggcgtctgga tgtgctggtc aacaacgcct atgctggggt ccaggcgatc
      781 ctgaacaaca ctaaaaaggc attctgggaa agccccgcct ccatctggga tgatatcaac
      841 aacgttggac tcagaggcca ctacttatgc tctgtgtatg gggcacggct gatggtacca
      901 gctggccggg ggctcatcgt ggtcatctcc tccattggtg ggctgcagta tttcttcaac
      961 gtcccctatg gcgtgggcaa agctgcgtgc gacaggctgg ctgctgactg tgcccaggag
     1021 ctgcggcgcc acggggtcag ctacgtgtcg ctttggccag ggttggtgca gacagaactg
     1081 ctgaaggagc acgtgatgaa ggaggagaac actgccgatc cccttgttga gcagttcaaa
     1141 tttcgtttct catctgcgga gaccacagaa atgagtggca aatgtgtggt ggccttggca
     1201 acagacccca atatcctgag cctaagcggg aaggtgctgc catcctgtga cctggcacgg
     1261 cgctatggcc tgcaggacgt tgatggccgc cccgtccagg actatttgtc tttgagctcc
     1321 gctctctccc atgtctccag cctgggctgg ttggcctcct acttgcctgg cttcctccga
     1381 gtgcccaagt gggttatgac cctctatgct agcaagttct aaccctcctg gcctgacaca
     1441 gttctgctcc cctttgggct gagtggttgg cctatcgcag tggaacaagg ccgcctttcc
     1501 cgcccacctg ctgcataccc ttgatctgaa gagaagacct ctgccgtgtg ccctggttga
     1561 gccctagggg cctttatagg tccttcttca ggtcttcctt gcccctgcgt tttacttttt
     1621 gccttaatat tgaaaaatgt tttgggggct aataaaggtc tcgtttctcc ttcag
//
LOCUS       XM_032619278            1487 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus dehydrogenase/reductase 1 (DHRS1),
            transcript variant X2, mRNA.
ACCESSION   XM_032619278
VERSION     XM_032619278.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1487
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1487
                     /gene="DHRS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 5 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747339"
     CDS             293..1234
                     /gene="DHRS1"
                     /codon_start=1
                     /product="dehydrogenase/reductase SDR family member 1"
                     /protein_id="XP_032475169.1"
                     /db_xref="GeneID:116747339"
                     /translation="MPAPMKGQVCVVTGASRGIGRGIALQLCQAGATVYITGRNLDTL
                     QATAQEAQSRGGRCVPVVCDSSQESEVRSLFEQVDQEQQGRLDVLVNNAYAGVQAILN
                     NTKKAFWESPASIWDDINNVGLRGHYLCSVYGARLMVPAGRGLIVVISSIGGLQYFFN
                     VPYGVGKAACDRLAADCAQELRRHGVSYVSLWPGLVQTELLKEHVMKEENTADPLVEQ
                     FKFRFSSAETTEMSGKCVVALATDPNILSLSGKVLPSCDLARRYGLQDVDGRPVQDYL
                     SLSSALSHVSSLGWLASYLPGFLRVPKWVMTLYASKF"
     misc_feature    305..1105
                     /gene="DHRS1"
                     /note="human dehydrogenase/reductase (SDR family) member 1
                     (DHRS1) -like, classical (c) SDRs; Region:
                     DHRS1-like_SDR_c; cd09763"
                     /db_xref="CDD:187664"
     misc_feature    order(332..334,338..349,404..412,422..424,479..487,
                     566..574,656..658,737..739,779..781,791..793,866..868,
                     878..883,887..889,971..976)
                     /gene="DHRS1"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:187664"
     misc_feature    order(494..496,623..625,629..631,638..643,650..652,
                     665..667,674..676,686..688,695..697,749..751,755..757,
                     761..763,773..775,785..787,806..811,815..823,827..832)
                     /gene="DHRS1"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:187664"
     misc_feature    order(659..661,743..745,779..781,791..793)
                     /gene="DHRS1"
                     /note="active site"
                     /db_xref="CDD:187664"
ORIGIN      
        1 gggagtggct gtttcgggat cgcccagctc tcgcttgcca gtgctggctc ctaccggtca
       61 ttgccccggg cccgcggggt actctttgat cctcccctcc gcgtcgccag cggaaactgg
      121 gtcagaacgc ggacttccac cccagcctcg tactctgacc ccgtagttgt cacctcgtcc
      181 cgctcccgcg gccagaatta aagtcttcga cttcgagaac tttgcgaacg aggcggcgcg
      241 agaactccag cagtagtaca cgtggccgat ttaacccctt ctcttgtgag tcatgccagc
      301 tcccatgaag ggccaggtgt gcgtggttac tggtgcttcc aggggtattg gccggggcat
      361 cgctttgcag ctctgccaag caggtgccac agtttacatc actggccgca atctggacac
      421 actgcaggcc actgctcagg aggcacaatc ccgagggggc cggtgtgtgc ccgtggtgtg
      481 tgattcaagc caggagagtg aagtgcgaag cctgtttgag caggtggatc aagaacagca
      541 ggggcgtctg gatgtgctgg tcaacaacgc ctatgctggg gtccaggcga tcctgaacaa
      601 cactaaaaag gcattctggg aaagccccgc ctccatctgg gatgatatca acaacgttgg
      661 actcagaggc cactacttat gctctgtgta tggggcacgg ctgatggtac cagctggccg
      721 ggggctcatc gtggtcatct cctccattgg tgggctgcag tatttcttca acgtccccta
      781 tggcgtgggc aaagctgcgt gcgacaggct ggctgctgac tgtgcccagg agctgcggcg
      841 ccacggggtc agctacgtgt cgctttggcc agggttggtg cagacagaac tgctgaagga
      901 gcacgtgatg aaggaggaga acactgccga tccccttgtt gagcagttca aatttcgttt
      961 ctcatctgcg gagaccacag aaatgagtgg caaatgtgtg gtggccttgg caacagaccc
     1021 caatatcctg agcctaagcg ggaaggtgct gccatcctgt gacctggcac ggcgctatgg
     1081 cctgcaggac gttgatggcc gccccgtcca ggactatttg tctttgagct ccgctctctc
     1141 ccatgtctcc agcctgggct ggttggcctc ctacttgcct ggcttcctcc gagtgcccaa
     1201 gtgggttatg accctctatg ctagcaagtt ctaaccctcc tggcctgaca cagttctgct
     1261 cccctttggg ctgagtggtt ggcctatcgc agtggaacaa ggccgccttt cccgcccacc
     1321 tgctgcatac ccttgatctg aagagaagac ctctgccgtg tgccctggtt gagccctagg
     1381 ggcctttata ggtccttctt caggtcttcc ttgcccctgc gttttacttt ttgccttaat
     1441 attgaaaaat gttttggggg ctaataaagg tctcgtttct ccttcag
//
LOCUS       XM_032619292            1216 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell death inducing DFFA like effector b
            (CIDEB), transcript variant X1, mRNA.
ACCESSION   XM_032619292
VERSION     XM_032619292.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1216
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1216
                     /gene="CIDEB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747345"
     CDS             114..773
                     /gene="CIDEB"
                     /codon_start=1
                     /product="cell death activator CIDE-B isoform X1"
                     /protein_id="XP_032475183.1"
                     /db_xref="GeneID:116747345"
                     /translation="MEYLSALDPSGLLRSVTSMSSDLGRKVWTSAPPPPRPFRVCDHK
                     RATRKGLTAATRRQLLDKAQETLTLSGVLTLVLEEDGTTVESEDFFQLLEDDTCLMVL
                     ELGQSWSPSRSGVLSYGLGREKPKHSKDIARITFDVYKQNPRDLFGSLNIKATFYGLY
                     SMSCDIQGLGPKKILRELLRWASALLQGLGHMLLGISSTLRHAVEGTERWQRQGRLQP
                     Y"
     misc_feature    213..455
                     /gene="CIDEB"
                     /note="CIDE_N domain, found at the N-terminus of the CIDE
                     (cell death-inducing DFF45-like effector) proteins, as
                     well as CAD nuclease (caspase-activated DNase/DNA
                     fragmentation factor, DFF40) and its inhibitor,
                     ICAD(DFF45). These proteins are associated with...;
                     Region: CIDE_N; cl02541"
                     /db_xref="CDD:470607"
     misc_feature    order(228..230,255..260,264..269,297..299,309..311,
                     351..353,357..362,375..380,435..437,441..443)
                     /gene="CIDEB"
                     /note="putative heterodimer interaction sites [polypeptide
                     binding]; other site"
                     /db_xref="CDD:119367"
ORIGIN      
        1 ctaagatccc agctccgtaa cagaaaacac caccacttca gctccaaccc cgccgagaac
       61 caccgagccc agaactcccg ggagaggcaa ctctcctgct ccttccctcc accatggagt
      121 acctctctgc cctggacccc agcggcctgc tcaggtcagt aaccagtatg agctccgatt
      181 tgggccgtaa ggtctggacc tcggctccac cacccccgcg acctttccgc gtctgtgatc
      241 acaagcgggc cacccggaaa ggccttacag ctgccacccg ccggcaactg ctagacaagg
      301 cacaggagac tctgacgctg agtggagtgc taacactggt gctggaggag gatgggacca
      361 cagtggagag cgaggacttc ttccagctgt tggaggatga cacatgcctg atggtgctgg
      421 agttgggaca gagctggagc cccagcagga gtggggtgct gtcgtatggc ctgggccggg
      481 agaagcccaa gcacagcaag gacatcgccc gcatcacctt cgacgtatac aagcaaaacc
      541 ctcgagacct ctttggcagc ctgaacatca aagccacgtt ctacgggctc tactccatga
      601 gctgcgacat tcaagggctc ggcccaaaga aaatactcag ggagctcctc cgatgggcct
      661 ccgcactgct gcaaggcctg ggccacatgc tgctgggaat ttcctccacc cttcgtcatg
      721 cagtggaagg gactgagcgg tggcagcggc agggtcgcct ccaaccctac tgagaagggg
      781 ctctgagctt ctgcccctag actcattcca agagacagac tgtaaggact gtgacagcat
      841 caagtttggg gcctacacac agtgctgtct cactagcccg cctgttttcc ccagtcttct
      901 gatcccatag tgacaggccc atcagcctaa cgccttctac cccagcctat acccattgct
      961 gaagaatact atccattcct agccatcttt gcagcctccc acttaccctg aaaggccaca
     1021 cagcctgtcc acaggcatct ggatcccacc ctgattgctg ctccatctag aggtccttac
     1081 cactcccctc ctgtccctaa gctccccagt gccctgaaga aagccctctc tgactttacc
     1141 ttgagatctc tatttctttg tacccttccc ccacaaaata acaaaggtgt ttccagtaaa
     1201 aatataaaaa tgttta
//
LOCUS       XM_032619304            1182 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cell death inducing DFFA like effector b
            (CIDEB), transcript variant X2, mRNA.
ACCESSION   XM_032619304
VERSION     XM_032619304.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1182
                     /gene="CIDEB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747345"
     CDS             136..741
                     /gene="CIDEB"
                     /codon_start=1
                     /product="cell death activator CIDE-B isoform X2"
                     /protein_id="XP_032475195.1"
                     /db_xref="GeneID:116747345"
                     /translation="MSSDLGRKVWTSAPPPPRPFRVCDHKRATRKGLTAATRRQLLDK
                     AQETLTLSGVLTLVLEEDGTTVESEDFFQLLEDDTCLMVLELGQSWSPSRSGVLSYGL
                     GREKPKHSKDIARITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILREL
                     LRWASALLQGLGHMLLGISSTLRHAVEGTERWQRQGRLQPY"
     misc_feature    181..423
                     /gene="CIDEB"
                     /note="CIDE_N domain, found at the N-terminus of the CIDE
                     (cell death-inducing DFF45-like effector) proteins, as
                     well as CAD nuclease (caspase-activated DNase/DNA
                     fragmentation factor, DFF40) and its inhibitor,
                     ICAD(DFF45). These proteins are associated with...;
                     Region: CIDE_N; cl02541"
                     /db_xref="CDD:470607"
     misc_feature    order(196..198,223..228,232..237,265..267,277..279,
                     319..321,325..330,343..348,403..405,409..411)
                     /gene="CIDEB"
                     /note="putative heterodimer interaction sites [polypeptide
                     binding]; other site"
                     /db_xref="CDD:119367"
ORIGIN      
        1 ggccgtgcct gtgacccgcg aggttttcca gctcagcagc gtctcgttcc ccgggggacc
       61 gtagcagacc gacatcccta ggcgcctacg ggaggctgga aagagccatg gagcgctttc
      121 aggtcagtaa ccagtatgag ctccgatttg ggccgtaagg tctggacctc ggctccacca
      181 cccccgcgac ctttccgcgt ctgtgatcac aagcgggcca cccggaaagg ccttacagct
      241 gccacccgcc ggcaactgct agacaaggca caggagactc tgacgctgag tggagtgcta
      301 acactggtgc tggaggagga tgggaccaca gtggagagcg aggacttctt ccagctgttg
      361 gaggatgaca catgcctgat ggtgctggag ttgggacaga gctggagccc cagcaggagt
      421 ggggtgctgt cgtatggcct gggccgggag aagcccaagc acagcaagga catcgcccgc
      481 atcaccttcg acgtatacaa gcaaaaccct cgagacctct ttggcagcct gaacatcaaa
      541 gccacgttct acgggctcta ctccatgagc tgcgacattc aagggctcgg cccaaagaaa
      601 atactcaggg agctcctccg atgggcctcc gcactgctgc aaggcctggg ccacatgctg
      661 ctgggaattt cctccaccct tcgtcatgca gtggaaggga ctgagcggtg gcagcggcag
      721 ggtcgcctcc aaccctactg agaaggggct ctgagcttct gcccctagac tcattccaag
      781 agacagactg taaggactgt gacagcatca agtttggggc ctacacacag tgctgtctca
      841 ctagcccgcc tgttttcccc agtcttctga tcccatagtg acaggcccat cagcctaacg
      901 ccttctaccc cagcctatac ccattgctga agaatactat ccattcctag ccatctttgc
      961 agcctcccac ttaccctgaa aggccacaca gcctgtccac aggcatctgg atcccaccct
     1021 gattgctgct ccatctagag gtccttacca ctcccctcct gtccctaagc tccccagtgc
     1081 cctgaagaaa gccctctctg actttacctt gagatctcta tttctttgta cccttccccc
     1141 acaaaataac aaaggtgttt ccagtaaaaa tataaaaatg tt
//
LOCUS       XM_032619319           10499 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule associated protein 1A
            (MAP1A), transcript variant X1, mRNA.
ACCESSION   XM_032619319
VERSION     XM_032619319.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10499
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10499
                     /gene="MAP1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 64 long SRA reads, 23 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747349"
     CDS             39..9095
                     /gene="MAP1A"
                     /codon_start=1
                     /product="microtubule-associated protein 1A isoform X1"
                     /protein_id="XP_032475210.1"
                     /db_xref="GeneID:116747349"
                     /translation="METEAGPRRPFDVAMETSPGLGLRSPGSLLAQNPAEPLCEAGAA
                     VAAARWDLQKHSLLIVIGDIGTENQLRAVRAHLEQGILSWNIDLSSIDLNQQLRLFIT
                     RHLAHFSSEVKGQRTLCHQSEILETIVLVNPSADSISSEVHHLLSSPSAHKLLILSGQ
                     SLEPGGDLILQSGTYSYQNFAQVLQNPEIAQLLSNRDPGIQAFLTVSCLGEGDWSHLG
                     LSSSQETLHLRLNPEPMLPTMDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKP
                     CCYIFPGGRGDSALFAVNGFNILVDGGSDRKSCFWKLVRHLDRIDSVLLTHIGADNLP
                     GINGLLQRKVAELEEEQSQGSSSYSDWVKNLISPELGVVFFNVPDKLRLPDASRKAKR
                     SIEEACLTLQHLNRLGIQAEPLYRVVSNTIEPLTLFHKMGVGRLDMYVLNPVKDSKEM
                     QFLMQKWAGNSKAKTGIVLASGKEAEISVPYLTSITALVVWLPANPTEKIVRVLFPGN
                     APQNKILEGLEKLRHLDFLRYPVATQKELATGAVPANLKPSKIKQRADSKESLKATTK
                     TAVGKLAKREEVAEEGAKEARSELAKELAKTEKKVKESSEKPPEKPAKPERVRTESSE
                     ALKAEKRKLIKDKVGKKHLKEKISKLEEKKDKEKKEIKKERKELKKDEGRKEEKKDAK
                     KEEKRKDTKPEVKKISKPDLKPFTPEVRKTLYKAKAPGRVKMEKSRAARGEKELSSEP
                     RTPPAQKGAAPFPTRELALSSPEDLTQDFEELKREETGLLAEQRDTGLGEKPLPPDTA
                     EEGLPSTVAPGAPPSVPGLEPEEPVIKEKEAVPDIPEEQGSKDRGPDSGAETEKERAP
                     WEDKKAKESEGLPDRKEAREESQPEVKEDVIEKAELEEMEELHPSDEEEEEETKAEGF
                     YQKHMQEALQVTPRGREALGGQELGLQGNAPEKETSSFLSSLATPAGATEHVSYIQDE
                     TIPGYSETEQTISDEEIHDEPEERAAPPRFPTGTYDLPGPEGPGPFEASQPADIAVPT
                     TPSKGYGAPESELTYPPNMVAAPLAEEEHVSSATSITECDKLSSFATSVAEDQSVASL
                     TAPQTEETGKSSLLLDTVTSIPSSHTEATQGLDYVPSAGTISPTSSLEEDKGFKSPPC
                     EEFSVTGESEKRGEIVQRGLSGERAVEEEEEETTNVQMSEKLHDQYEPLMFAAPGHTL
                     HPGEPAVGEAEERCLSPDDSTVKMASPPPSGPPSATHTPFHQSPVEEKSEPQDFQEAD
                     SWGDTKHTPGVGKEDAAEGTVKPGPEEGTPEEEGTLPPPRSPQAQEAPISIVGGHAGC
                     TVPLLPEEDKAIVFETVEAGEPTGPILETEALPRDLRTSHQESGEPQKDEVLRFPDRG
                     LSPEEVESPSVLSVVSPDTAKQEAVPRSPCGLTEQHLHKDLWPQVSPEDTRSLSLSEE
                     SPSKETSLDISSKQLSPESLGTLQFGELTLGKEEKGPLMQTEDTSHRLAPVSVPEARA
                     ATVSPPTDGTSGYAAQADVTDESPDGKLPASSFSHSTLLGDGKQSPGMITSPGEHILT
                     PDSSLTKSPESLLSPAMEDIAMEWEDKVPELRDGPPEQKEKGPEPKDEVLQQKDKSLE
                     QKDTVTEQKGTAIYRKDEALEEKDKAVEQQDKALEQKGRDLEHRDTALEQKDKALEGK
                     DKDLEPKDRDLEPKDKTLEQEDKVPGEKDEILEQKVRDSEHKDKVPEDKVPELKGKAL
                     EQKDEAPEQDKAPEQKDKALEKKDQALEQKYLALEQKGEALEQNICPKAVERKDKILE
                     EKDKTQEQESPVQEDKTMTLKEKILEEKSPEKVKAVGQKEEALLEKTKALGLEESPVQ
                     EDKAREQDEKYWKEQDVVQEWQETSPARGEPAGEQKEPARTWEDTSPEQEDRYWRGRE
                     DVVLEQDTYWRELSCERKVWFPHELGGQGARPRFTEERESTFLDEGPDDEQEVPPLEP
                     TPKSPWASDFKGFQEPSPQKELEVERWLAESPVGLPPEEEDKLTRSPFEIISPPASPP
                     EMVGQRVPLATGQESPIPDPKPMPPMRNEPTTPSWLADIPPWVPKDRPLPPAPLSPAP
                     APPTPAPQPLTPAPFSWDTAKYDSVVAAVQEGAAELEGGPYSPLGKDYRKAEGEREEE
                     GGVGVPDSSPLRSKVPEASASHASKEPEQTEPEQREPTPYPDERSFQYADIYEQMMLT
                     GLGPACPTREPPLGAAGDWPPHISTKEEAAGQCTSAEKELSSPVSPHHLQFDTPTFSY
                     AALAGPTIPPKQEPEPGPSVDPSLTPPAIPPRAPIPQSKGPSPPLNGNILSHSPDRRT
                     PSPKEPGRGHWDDSTSDLELEKGAREQPEKEAQPPSTPQPMPAGPSALWPESEAHTSP
                     SLDSHLGPARPSLDFPASAFGFSSLQPAPPQLPSPAEPRSAPCGSLAFSGDRALALAP
                     GPPTRARHDEYLEVTKAPSLDSSLPQLPSPSSPGAPLSSLPRPASPALSEGSSSEATT
                     PVMSSVAECFPPSLEAAEQGSVELVPGMEPAAHGLWDLTSLSPAPPASLGLAPALAPS
                     LPGDMDEGTLPCRLECSGGATKKPSPLQGPSRDRATNGPTETSPKLPGPAPAEAEKGK
                     AEACPAWERGAWPEGAERSSRPDTLLSPEQPLCPGGASGDQPRSVSPEMEAGPQGCAA
                     EPRPHRGELSPSFLNPPLPQSTDDSDLLTEEARLVGRGGRRRAGAAGATGGPCPVADE
                     TPPTSVSDSGSSQSDSDVPPETEECPSITAEAALDSDEDGDFLPVDKAGGFSGTHHPR
                     PGHDPPPIPQPDPRPSPPRPDVCMADPEGLSSESGRVERLREKEKTQGRVGRRATGRA
                     KPASPAQRLDLRGKRSPTPGKGTADRASRVPPRPRSTPSQVTPAEEKDGHSPMSKGLI
                     NGLKAGPTALGSKGSSGPPVYVDLAYIPNHCSGKTADLDFFRRVRASYYVVSGNDPAN
                     GEPSRAVLDALLEGKAQWGENLQVTLIPTHDTEVTREWYQQTHEQQQQLNVLVLASSS
                     TVVMQDESFPACKIEF"
     misc_feature    888..>1199
                     /gene="MAP1A"
                     /note="DNA uptake channel protein ComEC C-terminal domain,
                     metallo-beta-lactamase superfamily [Intracellular
                     trafficking, secretion, and vesicular transport]; Region:
                     ComEC; COG2333"
                     /db_xref="CDD:441904"
     misc_feature    <1644..2813
                     /gene="MAP1A"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <4752..6038
                     /gene="MAP1A"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    6006..>7115
                     /gene="MAP1A"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    <6693..8375
                     /gene="MAP1A"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 agcggatgct gccggcctag cactccaacg gagtttccat ggagaccgag gctgggcccc
       61 ggcggccttt cgacgttgcc atggagacaa gtccggggct agggctccga agccccggct
      121 ctctgctggc tcagaacccc gcggagccgc tgtgcgaggc cggagccgcg gtggcggcgg
      181 cacgctggga cctgcagaaa cactctttgc tcatcgtgat cggcgatatc ggtacagaga
      241 atcagctgag ggccgttcgg gcccaccttg agcaagggat tctctcctgg aacattgatt
      301 tatcatccat tgacttgaac caacaattga gactcttcat tacccggcat ctagctcact
      361 tctcctcaga ggtcaaaggc cagaggaccc tctgccacca gagtgagatc ctagagacca
      421 tcgtcctggt aaaccccagt gccgacagca tcagctctga ggttcaccac ctccttagca
      481 gcccatcagc tcacaaacta ctgatcttga gtgggcaaag tttagagcct gggggagacc
      541 tcatcctaca gagtggcacc tactcctatc aaaactttgc ccaggtcctt caaaacccag
      601 agattgccca attgctcagc aatagagacc ctgggatcca ggctttcctc actgtgtcct
      661 gcttagggga gggtgattgg agccacctgg gactatccag ttcccaagag accctgcacc
      721 tccggctaaa ccctgagccc atgctgccca ccatggatgg cgtggctgag ttctccgagt
      781 acgtctctga gaccgtggat gtgccatccc cctttgacct gctggagccc cccacctcag
      841 ggggcttcct caagctctcc aagccatgct gctacatctt ccctggcggc cgcggggact
      901 ctgccctctt tgccgttaat ggtttcaaca tcctggtgga tggtggctct gatcgcaagt
      961 cctgcttctg gaagctggtg cggcacctgg accgcattga ctccgtgctg ctcacacaca
     1021 tcggggcaga caacctgcca ggcatcaacg gactcctgca gcgcaaagtg gcagaactgg
     1081 aggaggagca gtcccaggga tctagcagct acagtgactg ggtgaagaac ctcatctccc
     1141 ccgagcttgg agtcgtcttc ttcaacgtgc ccgataagct gcggctgcct gatgcctcgc
     1201 ggaaggccaa gcgcagcatt gaggaggcct gcctcactct gcagcactta aaccgcctag
     1261 gcatccaggc cgagcccctc taccgtgtgg tcagcaacac catcgagccg ctgaccctct
     1321 tccacaagat gggtgtgggc cgcctggaca tgtacgtcct caaccctgtc aaggatagca
     1381 aggagatgca gttcctcatg caaaagtggg caggcaacag taaagctaag acaggcattg
     1441 tgctggctag tgggaaggag gctgagatct cggtgcccta cctgacctcc atcactgctc
     1501 tggtggtctg gctaccagcc aaccccactg agaagattgt gcgcgtgctt tttccaggga
     1561 atgctcccca gaacaagatc ttggagggcc tggaaaagct tcgacacctg gacttcttgc
     1621 gctaccccgt ggccacgcag aaggagctgg ccactggggc tgtgcctgcc aacctcaaac
     1681 ccagcaaaat caaacagcgg gctgatagca aggagagcct caaggccaca accaagacag
     1741 ccgtgggcaa gctggccaaa cgggaggagg tggccgaaga gggagccaag gaggcccgct
     1801 cagaactggc caaggagtta gccaagacag agaagaaggt aaaggagtca tctgagaagc
     1861 ccccagagaa gcctgccaag cctgagaggg tgaggacaga gtcgagtgag gcactgaagg
     1921 cagagaagcg aaagctgatc aaagacaagg tggggaagaa gcacctgaaa gaaaagatat
     1981 caaagctgga agagaaaaaa gacaaagaga agaaagagat caagaaggag aggaaggagc
     2041 tcaagaagga tgaaggaagg aaggaggaaa agaaggatgc caagaaggag gagaagagga
     2101 aagataccaa acctgaggtc aaaaagattt ccaagccaga cctgaagccc tttacccctg
     2161 aggtacgtaa gaccctctac aaagccaagg cccccggcag agtcaagatg gagaagagcc
     2221 gggctgcccg tggggagaag gagctgtcct ctgagccccg gacaccccca gcccaaaagg
     2281 gggctgcacc attcccaaca agggagctgg ccttgtcttc accagaggat ctcacacagg
     2341 acttcgagga gttgaagcgt gaggagacgg ggttgctggc tgaacaaagg gacacaggac
     2401 taggagagaa accactcccc ccagacactg cagaggaggg actcccaagc acagtggccc
     2461 cgggggcacc accctctgtc ccagggctgg aaccagaaga gcctgtgata aaggagaaag
     2521 aggctgtccc agacatccct gaggaacaag gcagcaagga cagaggccca gactctgggg
     2581 ctgaaacaga gaaagagaga gccccctggg aggataaaaa ggcaaaggaa tcagaggggc
     2641 tccccgacag aaaagaagcc agagaggaaa gtcaacctga ggtaaaggag gatgtgatag
     2701 agaaggctga gttagaggaa atggaggagc tgcacccttc agacgaggag gaagaggaag
     2761 agacaaaggc tgagggtttt taccaaaaac atatgcaaga agccttgcag gtaacgccaa
     2821 ggggcaggga ggctctcggg ggccaggaac taggactcca aggcaatgcc cctgagaagg
     2881 agacctcgtc attcctaagt agcctggcca cccctgcagg agccactgag cacgtctctt
     2941 acatccagga cgagacaatc cctggctact cagagaccga gcagactatc tcagatgagg
     3001 agatccatga tgagccggag gagcgtgcag ctccacctag atttcctaca ggtacctatg
     3061 acctccctgg gcctgaaggt cctggcccct ttgaggctag ccagcctgca gacattgctg
     3121 ttcccaccac ccccagcaaa ggctatggag cgccagagtc ggaactcacc taccccccca
     3181 acatggtggc cgcccctctg gctgaagagg agcatgtgtc ctcggccacc tcaatcactg
     3241 agtgtgacaa gctttcttcc tttgccacat ccgtggctga ggaccagtcc gtggcttcac
     3301 tcacagctcc ccagacagag gagacaggta agagctccct gctgcttgac acagtcacaa
     3361 gcatcccctc ctcccacacg gaagccactc agggcctgga ctacgtgcca tcagctggta
     3421 ccatctcacc cacctcctca ctggaagaag acaaaggttt caaatcacca ccctgtgagg
     3481 agttctccgt gactggggag tcagagaaga gaggagagat tgtacagaga ggcttgtctg
     3541 gagagagagc cgtggaagag gaagaggagg agaccacaaa tgtacagatg tctgagaaac
     3601 ttcacgatca gtatgaaccc ctgatgtttg ctgcccctgg ccacacccta catcccgggg
     3661 aaccagccgt tggagaagcg gaggagcgct gcctcagccc agatgacagc acagtgaaga
     3721 tggcctctcc cccaccatct ggcccaccca gtgccaccca cacgcccttt catcagtccc
     3781 cagtggaaga aaagtctgag ccccaagact ttcaggaagc agactcctgg ggagatacta
     3841 agcatacacc aggtgtgggc aaggaagatg ctgcagaagg gacagtcaag ccggggcctg
     3901 aagagggcac accagaggag gagggaacgt tgcctcctcc caggagcccc caggcccagg
     3961 aagcacccat cagcattgtt ggaggacatg caggctgtac cgtcccactg ctgccagaag
     4021 aggacaaagc aatagtcttt gagactgtgg aggcgggaga gcccacaggg ccaattctgg
     4081 aaacagaagc ccttcccaga gatttgagaa catcacacca agaatctggt gaaccacaga
     4141 aagatgaggt gctccggttt cctgaccgag gcctctcccc tgaagaggtg gagtccccct
     4201 ctgtcctcag tgtggtctcc ccagacactg ccaagcaaga agccgtccct aggtctccct
     4261 gtggcctgac agagcagcac ctacacaaag acctttggcc acaggtatct ccagaagaca
     4321 cccggtcgct ttctctctca gaagagagtc ccagcaagga gacctctctg gatatctctt
     4381 ctaagcagct gtctccagaa agccttggta ccctccagtt tggggaacta acccttggaa
     4441 aggaagaaaa agggcctctg atgcagactg aggacacctc tcaccgccta gcccctgtgt
     4501 ctgttccaga agcccgtgca gccacagtgt cacctcccac agatgggacc agtggatatg
     4561 ctgcacaggc agacgtcaca gatgagagcc ctgacggaaa attacctgcc agctccttct
     4621 ctcactctac actgttggga gatgggaagc agtcacctgg aatgatcaca agccctggtg
     4681 aacacattct gacacctgat agctccctca ccaagagtcc tgagtccttg ctgagccctg
     4741 ccatggagga tattgccatg gagtgggaag ataaagttcc agagttgaga gacggacccc
     4801 cagagcagaa ggagaaggga cctgagccaa aggatgaagt cctacagcag aaggacaaaa
     4861 gtctggagca gaaggatact gtcacagagc agaagggtac agccatctat cgcaaagatg
     4921 aggctctgga agaaaaggac aaggctgtgg aacagcagga taaggctttg gaacaaaaag
     4981 gcagagactt agagcatagg gacacagccc tggaacaaaa ggacaaggcc ctggaaggaa
     5041 aagacaaaga cttagaacct aaagacagag acttagaacc aaaagacaag accttggaac
     5101 aggaggacaa ggtcccagga gagaaagatg aaatcttaga acaaaaagtc agagactctg
     5161 aacataaaga caaggttcca gaggacaagg tccctgaact gaagggcaag gccttagaac
     5221 agaaagatga agcccctgag caggacaagg ccccggaaca gaaggacaag gccttggaaa
     5281 agaaggacca ggctttagaa caaaaatact tggccctaga acagaagggt gaagctctgg
     5341 aacaaaacat ttgtccaaag gctgttgaac gaaaagacaa gattctggaa gagaaggaca
     5401 aaactcagga gcaggagagt cctgtacagg aggataaaac catgacacta aaggagaaga
     5461 tcctagagga aaaatctcca gaaaaagtca aggctgtggg acagaaggaa gaagctctgc
     5521 tggagaagac caaagctctg gggctggaag agagcccagt gcaggaggac aaggcccggg
     5581 agcaggacga gaagtactgg aaggagcagg acgtggtcca ggagtggcaa gaaacatctc
     5641 cagccagagg agagccagct ggagaacaga aggagcctgc ccggacatgg gaggacacat
     5701 ctcctgagca ggaggacagg tactggaggg gcagagagga tgtggtcctg gaacaggaca
     5761 catactggag ggagctgagc tgtgagcgga aggtctggtt ccctcatgag ctgggtggcc
     5821 agggggcccg gccacggttc acagaagagc gggagagcac tttcctcgat gaggggccgg
     5881 atgatgagca ggaagtgccc cccttggagc ctacacccaa gagtccctgg gcctcagact
     5941 ttaagggctt ccaggagccc tcaccacaga aggagctgga ggtggagcgc tggcttgctg
     6001 agtcaccagt tgggctgcca ccagaggaag aggacaagct gactcgctcc ccttttgaga
     6061 tcatctctcc tccggcctcc ccacctgaga tggttggaca gagggttccg ctggccacag
     6121 gacaagagag ccctatccca gatcctaagc ccatgccacc catgaggaat gagcccacca
     6181 ccccgtcatg gctggctgac atcccaccat gggtgcccaa ggacagaccc ctgccccctg
     6241 cacccctgtc cccagctcca gctcccccaa cacctgcccc acagccactc actcctgcgc
     6301 ccttctcttg ggacacagcc aagtatgaca gtgtggtggc tgcagtgcag gagggggcag
     6361 ctgagttgga aggcgggcca tactcccccc tagggaagga ctaccgcaag gctgaagggg
     6421 aaagggaaga agaaggtggg gttggggttc ctgacagcag ccccctcagg tcaaaggtcc
     6481 cagaggccag cgctagccat gcctctaagg agccggagca gacggagcca gagcagagag
     6541 agcccacacc ctatcccgat gagcgaagct tccagtatgc agacatctat gagcagatga
     6601 tgctcactgg gctgggccct gcatgcccca ctagagagcc tccacttgga gcagctgggg
     6661 attggccccc acatatctca accaaggagg aggctgctgg ccaatgcaca tctgcagaga
     6721 aggagctttc gtctcctgtc tcaccccatc acctccaatt cgacactcca accttcagct
     6781 atgcagctct ggcgggaccc accatacccc ccaagcagga gcctgagcca gggccaagcg
     6841 tggatcccag cctcacccca cctgcaatac ccccccgtgc tcctatcccc cagagcaaag
     6901 gcccaagccc cccacttaat ggtaacatcc tgagccatag cccagatagg agaaccccat
     6961 cccccaagga accaggccgt ggtcactggg atgacagcac aagtgacttg gagctggaga
     7021 agggggctcg ggagcagcct gagaaagagg cccagccccc aagtaccccg caacccatgc
     7081 ctgcaggccc ctccgccctg tggcctgaaa gtgaggcaca taccagccct tccttggact
     7141 cccacctggg tcctgcccga cccagcctgg acttccctgc atcagccttt ggcttctcct
     7201 cattgcagcc agctcctcca cagctgccct ctccagcaga accccgctcg gcaccctgtg
     7261 ggtcccttgc cttctctggt gaccgagctt tggctctggc tccagggccc cccaccagag
     7321 cccggcatga tgagtaccta gaagtaacca aggcccccag cctggactct tcactgcccc
     7381 agctcccatc acccagctct cccggggccc ctctctccag tcttccgcga cctgcctcac
     7441 cagccctatc tgaaggctcc tcttctgagg ccaccacacc tgtgatgtcg agtgtggctg
     7501 agtgcttccc tcccagcctg gaggctgcag aacaagggtc tgtagagctg gtcccaggaa
     7561 tggaaccagc tgcccacggc ctctgggacc tcacttctct gagcccagca cctccagctt
     7621 cactgggcct ggccccagct ctggctccaa gcctgcctgg agacatggat gagggcaccc
     7681 tgccctgccg cctggagtgc tcagggggag ccaccaagaa gccaagcccc ttacagggcc
     7741 cctccaggga tcgtgccacc aatggcccaa ctgaaaccag ccccaagctc ccaggccctg
     7801 ccccagctga ggctgagaaa ggaaaggctg aggcctgtcc cgcctgggaa cgtggggcct
     7861 ggcctgaggg agccgagagg agctccaggc ctgacacact gctctcccct gagcagccac
     7921 tgtgccctgg aggggcctct ggagaccaac ctagaagtgt ctcccctgag atggaggctg
     7981 ggccccaggg atgtgctgct gagccccggc cgcatcgtgg ggagctctct ccatccttcc
     8041 tgaacccacc tctgcctcaa tccacggatg acagtgacct cttaactgag gaagctcggc
     8101 tggtagggag aggggggcgg cgtcgggcgg gggctgcagg ggccacaggg ggcccctgcc
     8161 ccgtggcaga tgagacaccc ccgacgtcag tcagcgactc gggctcctcg cagtcagatt
     8221 ctgacgttcc accagaaact gaggagtgtc catccatcac agctgaggca gccctcgact
     8281 cagatgaaga tggggacttc ctgcctgtgg acaaagctgg tgggtttagt gggactcacc
     8341 atcccaggcc tggccatgac ccacccccta tcccccagcc agaccctcgc ccatcccctc
     8401 cccgccctga cgtgtgcatg gctgaccccg aggggctcag ctcagagtct ggaagggtag
     8461 agaggctacg ggagaaggag aagacacagg ggagagtcgg ccgcagggcc acaggcaggg
     8521 ccaagccagc gtctcctgcc cagcgtctgg atcttcgggg aaaacgctca cccactcctg
     8581 gtaaagggac tgcagatcga gcatcccggg tgccaccccg accacgcagc actccaagcc
     8641 aggtcacccc agcagaggaa aaggatggac acagccccat gtccaaaggc ctaatcaatg
     8701 gactcaaggc aggaccaacg gccttgggtt ccaagggcag ctctggcccc cctgtatatg
     8761 tggatcttgc ctatatcccg aatcattgca gtggcaagac tgctgacctt gacttcttcc
     8821 gacgagtgcg tgcatcctac tatgtggtca gtgggaatga ccctgccaat ggcgagccga
     8881 gccgggctgt gctggacgcc ctgctggagg gcaaggccca gtggggggag aatcttcagg
     8941 taactctgat ccctactcac gacacggagg tgactcgtga gtggtaccag cagactcatg
     9001 agcagcagca acaactgaac gttctggtcc tggcgagcag cagcaccgtg gtcatgcagg
     9061 atgagtcctt cccagcctgc aagattgagt tctgaaagaa ccactctccc ttccccaagg
     9121 atctgctccc acaaccccct tagagaatgg ctgatgctga gtcctttggg gttgagggac
     9181 atgggagttg aggggggcga gggggacagg atgtctagtg ggaacttagg ctgggctaaa
     9241 cgggaggggt tgtgcccccc cttcatccat gcctgaaagg agtctcaaaa ccaaaggtaa
     9301 caggattagg atagggggag ggtgcaaaat taggatacaa ggtcatctga tgcctgagaa
     9361 ccctggagtg acaccctctc ttagcactcc ctaatgctgg tgttgggtgg ggagtgagga
     9421 tggatagaga gcaacctcct ccctcatgga gggagatcat atccccaacc ccaaggacct
     9481 ctttatctta atctatgtat ttagcatccc aaggaaggat ttccaatagt aatttatgtg
     9541 acctgggggc aggatactgt cagtgaggtt gccagagctg catcctttcc tccatctccc
     9601 attcccttcc ccaccagagt ctgggtccca gcagggttct gggggtatgc tgctgctaca
     9661 ctgtcccact gcttctctcc gtatctgaat gtttcaatcc aaaacttgaa gctcttttga
     9721 ccaacagatt ggtgagagaa gaaaggagct tatcctcccg gcccctgctt cataccattc
     9781 acatcccaga gctgtgccca gaccaggcct actgggcagc acaaaggagc aaggagagcc
     9841 cagccccaat cgcagacttc ttccaagctc cctgacctta tgaagttttc acccacccat
     9901 tccaactctc ctgatccctt ctcatacctg cttggcttat ctgcatgtgg tcccctgctg
     9961 tggcctggtg tgtaatgggt taaaaagcca ctgcctgaca tcctaacatt tgacacccca
    10021 gcaacgtgtg actctcccaa cattccacta tgccatcctg cagctgaaat gggaacgctg
    10081 gctacttttc cagccccaga ctcttggaca gaggatcggg gaggtggagg ccatgccaga
    10141 ggacttgggg aaaatgagag ggaggaagga aagagggaga ggaagctgag ctaggtctta
    10201 actcctactg agtgagatga aaacaggccg aaaataccac cccaggagag gacctcaccc
    10261 caagcaagcc actaagcagc cctgccagac gactacggga ctgagcaatc cagacgctct
    10321 tcagggctca gcttctctgc caaatgactg tggaaaccaa aacgagacca cctgtgttct
    10381 tcctagctcc caccctctcg tgctgctgtg ctctgctccc tcccacacgt ccctgctaca
    10441 cttcccagct gctgtgacgg agccacctcc aactctaaca ataaatcaag ttcattaca
//
LOCUS       XM_032619328           10213 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule associated protein 1A
            (MAP1A), transcript variant X2, mRNA.
ACCESSION   XM_032619328
VERSION     XM_032619328.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10213
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..10213
                     /gene="MAP1A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 68 long SRA reads, 12
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747349"
     CDS             455..8809
                     /gene="MAP1A"
                     /codon_start=1
                     /product="microtubule-associated protein 1A isoform X2"
                     /protein_id="XP_032475219.1"
                     /db_xref="GeneID:116747349"
                     /translation="MLPTMDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKPCC
                     YIFPGGRGDSALFAVNGFNILVDGGSDRKSCFWKLVRHLDRIDSVLLTHIGADNLPGI
                     NGLLQRKVAELEEEQSQGSSSYSDWVKNLISPELGVVFFNVPDKLRLPDASRKAKRSI
                     EEACLTLQHLNRLGIQAEPLYRVVSNTIEPLTLFHKMGVGRLDMYVLNPVKDSKEMQF
                     LMQKWAGNSKAKTGIVLASGKEAEISVPYLTSITALVVWLPANPTEKIVRVLFPGNAP
                     QNKILEGLEKLRHLDFLRYPVATQKELATGAVPANLKPSKIKQRADSKESLKATTKTA
                     VGKLAKREEVAEEGAKEARSELAKELAKTEKKVKESSEKPPEKPAKPERVRTESSEAL
                     KAEKRKLIKDKVGKKHLKEKISKLEEKKDKEKKEIKKERKELKKDEGRKEEKKDAKKE
                     EKRKDTKPEVKKISKPDLKPFTPEVRKTLYKAKAPGRVKMEKSRAARGEKELSSEPRT
                     PPAQKGAAPFPTRELALSSPEDLTQDFEELKREETGLLAEQRDTGLGEKPLPPDTAEE
                     GLPSTVAPGAPPSVPGLEPEEPVIKEKEAVPDIPEEQGSKDRGPDSGAETEKERAPWE
                     DKKAKESEGLPDRKEAREESQPEVKEDVIEKAELEEMEELHPSDEEEEEETKAEGFYQ
                     KHMQEALQVTPRGREALGGQELGLQGNAPEKETSSFLSSLATPAGATEHVSYIQDETI
                     PGYSETEQTISDEEIHDEPEERAAPPRFPTGTYDLPGPEGPGPFEASQPADIAVPTTP
                     SKGYGAPESELTYPPNMVAAPLAEEEHVSSATSITECDKLSSFATSVAEDQSVASLTA
                     PQTEETGKSSLLLDTVTSIPSSHTEATQGLDYVPSAGTISPTSSLEEDKGFKSPPCEE
                     FSVTGESEKRGEIVQRGLSGERAVEEEEEETTNVQMSEKLHDQYEPLMFAAPGHTLHP
                     GEPAVGEAEERCLSPDDSTVKMASPPPSGPPSATHTPFHQSPVEEKSEPQDFQEADSW
                     GDTKHTPGVGKEDAAEGTVKPGPEEGTPEEEGTLPPPRSPQAQEAPISIVGGHAGCTV
                     PLLPEEDKAIVFETVEAGEPTGPILETEALPRDLRTSHQESGEPQKDEVLRFPDRGLS
                     PEEVESPSVLSVVSPDTAKQEAVPRSPCGLTEQHLHKDLWPQVSPEDTRSLSLSEESP
                     SKETSLDISSKQLSPESLGTLQFGELTLGKEEKGPLMQTEDTSHRLAPVSVPEARAAT
                     VSPPTDGTSGYAAQADVTDESPDGKLPASSFSHSTLLGDGKQSPGMITSPGEHILTPD
                     SSLTKSPESLLSPAMEDIAMEWEDKVPELRDGPPEQKEKGPEPKDEVLQQKDKSLEQK
                     DTVTEQKGTAIYRKDEALEEKDKAVEQQDKALEQKGRDLEHRDTALEQKDKALEGKDK
                     DLEPKDRDLEPKDKTLEQEDKVPGEKDEILEQKVRDSEHKDKVPEDKVPELKGKALEQ
                     KDEAPEQDKAPEQKDKALEKKDQALEQKYLALEQKGEALEQNICPKAVERKDKILEEK
                     DKTQEQESPVQEDKTMTLKEKILEEKSPEKVKAVGQKEEALLEKTKALGLEESPVQED
                     KAREQDEKYWKEQDVVQEWQETSPARGEPAGEQKEPARTWEDTSPEQEDRYWRGREDV
                     VLEQDTYWRELSCERKVWFPHELGGQGARPRFTEERESTFLDEGPDDEQEVPPLEPTP
                     KSPWASDFKGFQEPSPQKELEVERWLAESPVGLPPEEEDKLTRSPFEIISPPASPPEM
                     VGQRVPLATGQESPIPDPKPMPPMRNEPTTPSWLADIPPWVPKDRPLPPAPLSPAPAP
                     PTPAPQPLTPAPFSWDTAKYDSVVAAVQEGAAELEGGPYSPLGKDYRKAEGEREEEGG
                     VGVPDSSPLRSKVPEASASHASKEPEQTEPEQREPTPYPDERSFQYADIYEQMMLTGL
                     GPACPTREPPLGAAGDWPPHISTKEEAAGQCTSAEKELSSPVSPHHLQFDTPTFSYAA
                     LAGPTIPPKQEPEPGPSVDPSLTPPAIPPRAPIPQSKGPSPPLNGNILSHSPDRRTPS
                     PKEPGRGHWDDSTSDLELEKGAREQPEKEAQPPSTPQPMPAGPSALWPESEAHTSPSL
                     DSHLGPARPSLDFPASAFGFSSLQPAPPQLPSPAEPRSAPCGSLAFSGDRALALAPGP
                     PTRARHDEYLEVTKAPSLDSSLPQLPSPSSPGAPLSSLPRPASPALSEGSSSEATTPV
                     MSSVAECFPPSLEAAEQGSVELVPGMEPAAHGLWDLTSLSPAPPASLGLAPALAPSLP
                     GDMDEGTLPCRLECSGGATKKPSPLQGPSRDRATNGPTETSPKLPGPAPAEAEKGKAE
                     ACPAWERGAWPEGAERSSRPDTLLSPEQPLCPGGASGDQPRSVSPEMEAGPQGCAAEP
                     RPHRGELSPSFLNPPLPQSTDDSDLLTEEARLVGRGGRRRAGAAGATGGPCPVADETP
                     PTSVSDSGSSQSDSDVPPETEECPSITAEAALDSDEDGDFLPVDKAGGFSGTHHPRPG
                     HDPPPIPQPDPRPSPPRPDVCMADPEGLSSESGRVERLREKEKTQGRVGRRATGRAKP
                     ASPAQRLDLRGKRSPTPGKGTADRASRVPPRPRSTPSQVTPAEEKDGHSPMSKGLING
                     LKAGPTALGSKGSSGPPVYVDLAYIPNHCSGKTADLDFFRRVRASYYVVSGNDPANGE
                     PSRAVLDALLEGKAQWGENLQVTLIPTHDTEVTREWYQQTHEQQQQLNVLVLASSSTV
                     VMQDESFPACKIEF"
     misc_feature    602..>913
                     /gene="MAP1A"
                     /note="DNA uptake channel protein ComEC C-terminal domain,
                     metallo-beta-lactamase superfamily [Intracellular
                     trafficking, secretion, and vesicular transport]; Region:
                     ComEC; COG2333"
                     /db_xref="CDD:441904"
     misc_feature    <1388..2548
                     /gene="MAP1A"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <4466..5752
                     /gene="MAP1A"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    5720..>6829
                     /gene="MAP1A"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    <6407..8089
                     /gene="MAP1A"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
        1 ctcccacccc tagtgccgca gactcgtccc cgaagctgcc ggctgaggcc ggagccacag
       61 cctcgatgag ggtctctctc ccacacccca gggccagagg accctctgcc accagagtga
      121 gatcctagag accatcgtcc tggtaaaccc cagtgccgac agcatcagct ctgaggttca
      181 ccacctcctt agcagcccat cagctcacaa actactgatc ttgagtgggc aaagtttaga
      241 gcctggggga gacctcatcc tacagagtgg cacctactcc tatcaaaact ttgcccaggt
      301 ccttcaaaac ccagagattg cccaattgct cagcaataga gaccctggga tccaggcttt
      361 cctcactgtg tcctgcttag gggagggtga ttggagccac ctgggactat ccagttccca
      421 agagaccctg cacctccggc taaaccctga gcccatgctg cccaccatgg atggcgtggc
      481 tgagttctcc gagtacgtct ctgagaccgt ggatgtgcca tccccctttg acctgctgga
      541 gccccccacc tcagggggct tcctcaagct ctccaagcca tgctgctaca tcttccctgg
      601 cggccgcggg gactctgccc tctttgccgt taatggtttc aacatcctgg tggatggtgg
      661 ctctgatcgc aagtcctgct tctggaagct ggtgcggcac ctggaccgca ttgactccgt
      721 gctgctcaca cacatcgggg cagacaacct gccaggcatc aacggactcc tgcagcgcaa
      781 agtggcagaa ctggaggagg agcagtccca gggatctagc agctacagtg actgggtgaa
      841 gaacctcatc tcccccgagc ttggagtcgt cttcttcaac gtgcccgata agctgcggct
      901 gcctgatgcc tcgcggaagg ccaagcgcag cattgaggag gcctgcctca ctctgcagca
      961 cttaaaccgc ctaggcatcc aggccgagcc cctctaccgt gtggtcagca acaccatcga
     1021 gccgctgacc ctcttccaca agatgggtgt gggccgcctg gacatgtacg tcctcaaccc
     1081 tgtcaaggat agcaaggaga tgcagttcct catgcaaaag tgggcaggca acagtaaagc
     1141 taagacaggc attgtgctgg ctagtgggaa ggaggctgag atctcggtgc cctacctgac
     1201 ctccatcact gctctggtgg tctggctacc agccaacccc actgagaaga ttgtgcgcgt
     1261 gctttttcca gggaatgctc cccagaacaa gatcttggag ggcctggaaa agcttcgaca
     1321 cctggacttc ttgcgctacc ccgtggccac gcagaaggag ctggccactg gggctgtgcc
     1381 tgccaacctc aaacccagca aaatcaaaca gcgggctgat agcaaggaga gcctcaaggc
     1441 cacaaccaag acagccgtgg gcaagctggc caaacgggag gaggtggccg aagagggagc
     1501 caaggaggcc cgctcagaac tggccaagga gttagccaag acagagaaga aggtaaagga
     1561 gtcatctgag aagcccccag agaagcctgc caagcctgag agggtgagga cagagtcgag
     1621 tgaggcactg aaggcagaga agcgaaagct gatcaaagac aaggtgggga agaagcacct
     1681 gaaagaaaag atatcaaagc tggaagagaa aaaagacaaa gagaagaaag agatcaagaa
     1741 ggagaggaag gagctcaaga aggatgaagg aaggaaggag gaaaagaagg atgccaagaa
     1801 ggaggagaag aggaaagata ccaaacctga ggtcaaaaag atttccaagc cagacctgaa
     1861 gccctttacc cctgaggtac gtaagaccct ctacaaagcc aaggcccccg gcagagtcaa
     1921 gatggagaag agccgggctg cccgtgggga gaaggagctg tcctctgagc cccggacacc
     1981 cccagcccaa aagggggctg caccattccc aacaagggag ctggccttgt cttcaccaga
     2041 ggatctcaca caggacttcg aggagttgaa gcgtgaggag acggggttgc tggctgaaca
     2101 aagggacaca ggactaggag agaaaccact ccccccagac actgcagagg agggactccc
     2161 aagcacagtg gccccggggg caccaccctc tgtcccaggg ctggaaccag aagagcctgt
     2221 gataaaggag aaagaggctg tcccagacat ccctgaggaa caaggcagca aggacagagg
     2281 cccagactct ggggctgaaa cagagaaaga gagagccccc tgggaggata aaaaggcaaa
     2341 ggaatcagag gggctccccg acagaaaaga agccagagag gaaagtcaac ctgaggtaaa
     2401 ggaggatgtg atagagaagg ctgagttaga ggaaatggag gagctgcacc cttcagacga
     2461 ggaggaagag gaagagacaa aggctgaggg tttttaccaa aaacatatgc aagaagcctt
     2521 gcaggtaacg ccaaggggca gggaggctct cgggggccag gaactaggac tccaaggcaa
     2581 tgcccctgag aaggagacct cgtcattcct aagtagcctg gccacccctg caggagccac
     2641 tgagcacgtc tcttacatcc aggacgagac aatccctggc tactcagaga ccgagcagac
     2701 tatctcagat gaggagatcc atgatgagcc ggaggagcgt gcagctccac ctagatttcc
     2761 tacaggtacc tatgacctcc ctgggcctga aggtcctggc ccctttgagg ctagccagcc
     2821 tgcagacatt gctgttccca ccacccccag caaaggctat ggagcgccag agtcggaact
     2881 cacctacccc cccaacatgg tggccgcccc tctggctgaa gaggagcatg tgtcctcggc
     2941 cacctcaatc actgagtgtg acaagctttc ttcctttgcc acatccgtgg ctgaggacca
     3001 gtccgtggct tcactcacag ctccccagac agaggagaca ggtaagagct ccctgctgct
     3061 tgacacagtc acaagcatcc cctcctccca cacggaagcc actcagggcc tggactacgt
     3121 gccatcagct ggtaccatct cacccacctc ctcactggaa gaagacaaag gtttcaaatc
     3181 accaccctgt gaggagttct ccgtgactgg ggagtcagag aagagaggag agattgtaca
     3241 gagaggcttg tctggagaga gagccgtgga agaggaagag gaggagacca caaatgtaca
     3301 gatgtctgag aaacttcacg atcagtatga acccctgatg tttgctgccc ctggccacac
     3361 cctacatccc ggggaaccag ccgttggaga agcggaggag cgctgcctca gcccagatga
     3421 cagcacagtg aagatggcct ctcccccacc atctggccca cccagtgcca cccacacgcc
     3481 ctttcatcag tccccagtgg aagaaaagtc tgagccccaa gactttcagg aagcagactc
     3541 ctggggagat actaagcata caccaggtgt gggcaaggaa gatgctgcag aagggacagt
     3601 caagccgggg cctgaagagg gcacaccaga ggaggaggga acgttgcctc ctcccaggag
     3661 cccccaggcc caggaagcac ccatcagcat tgttggagga catgcaggct gtaccgtccc
     3721 actgctgcca gaagaggaca aagcaatagt ctttgagact gtggaggcgg gagagcccac
     3781 agggccaatt ctggaaacag aagcccttcc cagagatttg agaacatcac accaagaatc
     3841 tggtgaacca cagaaagatg aggtgctccg gtttcctgac cgaggcctct cccctgaaga
     3901 ggtggagtcc ccctctgtcc tcagtgtggt ctccccagac actgccaagc aagaagccgt
     3961 ccctaggtct ccctgtggcc tgacagagca gcacctacac aaagaccttt ggccacaggt
     4021 atctccagaa gacacccggt cgctttctct ctcagaagag agtcccagca aggagacctc
     4081 tctggatatc tcttctaagc agctgtctcc agaaagcctt ggtaccctcc agtttgggga
     4141 actaaccctt ggaaaggaag aaaaagggcc tctgatgcag actgaggaca cctctcaccg
     4201 cctagcccct gtgtctgttc cagaagcccg tgcagccaca gtgtcacctc ccacagatgg
     4261 gaccagtgga tatgctgcac aggcagacgt cacagatgag agccctgacg gaaaattacc
     4321 tgccagctcc ttctctcact ctacactgtt gggagatggg aagcagtcac ctggaatgat
     4381 cacaagccct ggtgaacaca ttctgacacc tgatagctcc ctcaccaaga gtcctgagtc
     4441 cttgctgagc cctgccatgg aggatattgc catggagtgg gaagataaag ttccagagtt
     4501 gagagacgga cccccagagc agaaggagaa gggacctgag ccaaaggatg aagtcctaca
     4561 gcagaaggac aaaagtctgg agcagaagga tactgtcaca gagcagaagg gtacagccat
     4621 ctatcgcaaa gatgaggctc tggaagaaaa ggacaaggct gtggaacagc aggataaggc
     4681 tttggaacaa aaaggcagag acttagagca tagggacaca gccctggaac aaaaggacaa
     4741 ggccctggaa ggaaaagaca aagacttaga acctaaagac agagacttag aaccaaaaga
     4801 caagaccttg gaacaggagg acaaggtccc aggagagaaa gatgaaatct tagaacaaaa
     4861 agtcagagac tctgaacata aagacaaggt tccagaggac aaggtccctg aactgaaggg
     4921 caaggcctta gaacagaaag atgaagcccc tgagcaggac aaggccccgg aacagaagga
     4981 caaggccttg gaaaagaagg accaggcttt agaacaaaaa tacttggccc tagaacagaa
     5041 gggtgaagct ctggaacaaa acatttgtcc aaaggctgtt gaacgaaaag acaagattct
     5101 ggaagagaag gacaaaactc aggagcagga gagtcctgta caggaggata aaaccatgac
     5161 actaaaggag aagatcctag aggaaaaatc tccagaaaaa gtcaaggctg tgggacagaa
     5221 ggaagaagct ctgctggaga agaccaaagc tctggggctg gaagagagcc cagtgcagga
     5281 ggacaaggcc cgggagcagg acgagaagta ctggaaggag caggacgtgg tccaggagtg
     5341 gcaagaaaca tctccagcca gaggagagcc agctggagaa cagaaggagc ctgcccggac
     5401 atgggaggac acatctcctg agcaggagga caggtactgg aggggcagag aggatgtggt
     5461 cctggaacag gacacatact ggagggagct gagctgtgag cggaaggtct ggttccctca
     5521 tgagctgggt ggccaggggg cccggccacg gttcacagaa gagcgggaga gcactttcct
     5581 cgatgagggg ccggatgatg agcaggaagt gccccccttg gagcctacac ccaagagtcc
     5641 ctgggcctca gactttaagg gcttccagga gccctcacca cagaaggagc tggaggtgga
     5701 gcgctggctt gctgagtcac cagttgggct gccaccagag gaagaggaca agctgactcg
     5761 ctcccctttt gagatcatct ctcctccggc ctccccacct gagatggttg gacagagggt
     5821 tccgctggcc acaggacaag agagccctat cccagatcct aagcccatgc cacccatgag
     5881 gaatgagccc accaccccgt catggctggc tgacatccca ccatgggtgc ccaaggacag
     5941 acccctgccc cctgcacccc tgtccccagc tccagctccc ccaacacctg ccccacagcc
     6001 actcactcct gcgcccttct cttgggacac agccaagtat gacagtgtgg tggctgcagt
     6061 gcaggagggg gcagctgagt tggaaggcgg gccatactcc cccctaggga aggactaccg
     6121 caaggctgaa ggggaaaggg aagaagaagg tggggttggg gttcctgaca gcagccccct
     6181 caggtcaaag gtcccagagg ccagcgctag ccatgcctct aaggagccgg agcagacgga
     6241 gccagagcag agagagccca caccctatcc cgatgagcga agcttccagt atgcagacat
     6301 ctatgagcag atgatgctca ctgggctggg ccctgcatgc cccactagag agcctccact
     6361 tggagcagct ggggattggc ccccacatat ctcaaccaag gaggaggctg ctggccaatg
     6421 cacatctgca gagaaggagc tttcgtctcc tgtctcaccc catcacctcc aattcgacac
     6481 tccaaccttc agctatgcag ctctggcggg acccaccata ccccccaagc aggagcctga
     6541 gccagggcca agcgtggatc ccagcctcac cccacctgca ataccccccc gtgctcctat
     6601 cccccagagc aaaggcccaa gccccccact taatggtaac atcctgagcc atagcccaga
     6661 taggagaacc ccatccccca aggaaccagg ccgtggtcac tgggatgaca gcacaagtga
     6721 cttggagctg gagaaggggg ctcgggagca gcctgagaaa gaggcccagc ccccaagtac
     6781 cccgcaaccc atgcctgcag gcccctccgc cctgtggcct gaaagtgagg cacataccag
     6841 cccttccttg gactcccacc tgggtcctgc ccgacccagc ctggacttcc ctgcatcagc
     6901 ctttggcttc tcctcattgc agccagctcc tccacagctg ccctctccag cagaaccccg
     6961 ctcggcaccc tgtgggtccc ttgccttctc tggtgaccga gctttggctc tggctccagg
     7021 gccccccacc agagcccggc atgatgagta cctagaagta accaaggccc ccagcctgga
     7081 ctcttcactg ccccagctcc catcacccag ctctcccggg gcccctctct ccagtcttcc
     7141 gcgacctgcc tcaccagccc tatctgaagg ctcctcttct gaggccacca cacctgtgat
     7201 gtcgagtgtg gctgagtgct tccctcccag cctggaggct gcagaacaag ggtctgtaga
     7261 gctggtccca ggaatggaac cagctgccca cggcctctgg gacctcactt ctctgagccc
     7321 agcacctcca gcttcactgg gcctggcccc agctctggct ccaagcctgc ctggagacat
     7381 ggatgagggc accctgccct gccgcctgga gtgctcaggg ggagccacca agaagccaag
     7441 ccccttacag ggcccctcca gggatcgtgc caccaatggc ccaactgaaa ccagccccaa
     7501 gctcccaggc cctgccccag ctgaggctga gaaaggaaag gctgaggcct gtcccgcctg
     7561 ggaacgtggg gcctggcctg agggagccga gaggagctcc aggcctgaca cactgctctc
     7621 ccctgagcag ccactgtgcc ctggaggggc ctctggagac caacctagaa gtgtctcccc
     7681 tgagatggag gctgggcccc agggatgtgc tgctgagccc cggccgcatc gtggggagct
     7741 ctctccatcc ttcctgaacc cacctctgcc tcaatccacg gatgacagtg acctcttaac
     7801 tgaggaagct cggctggtag ggagaggggg gcggcgtcgg gcgggggctg caggggccac
     7861 agggggcccc tgccccgtgg cagatgagac acccccgacg tcagtcagcg actcgggctc
     7921 ctcgcagtca gattctgacg ttccaccaga aactgaggag tgtccatcca tcacagctga
     7981 ggcagccctc gactcagatg aagatgggga cttcctgcct gtggacaaag ctggtgggtt
     8041 tagtgggact caccatccca ggcctggcca tgacccaccc cctatccccc agccagaccc
     8101 tcgcccatcc cctccccgcc ctgacgtgtg catggctgac cccgaggggc tcagctcaga
     8161 gtctggaagg gtagagaggc tacgggagaa ggagaagaca caggggagag tcggccgcag
     8221 ggccacaggc agggccaagc cagcgtctcc tgcccagcgt ctggatcttc ggggaaaacg
     8281 ctcacccact cctggtaaag ggactgcaga tcgagcatcc cgggtgccac cccgaccacg
     8341 cagcactcca agccaggtca ccccagcaga ggaaaaggat ggacacagcc ccatgtccaa
     8401 aggcctaatc aatggactca aggcaggacc aacggccttg ggttccaagg gcagctctgg
     8461 cccccctgta tatgtggatc ttgcctatat cccgaatcat tgcagtggca agactgctga
     8521 ccttgacttc ttccgacgag tgcgtgcatc ctactatgtg gtcagtggga atgaccctgc
     8581 caatggcgag ccgagccggg ctgtgctgga cgccctgctg gagggcaagg cccagtgggg
     8641 ggagaatctt caggtaactc tgatccctac tcacgacacg gaggtgactc gtgagtggta
     8701 ccagcagact catgagcagc agcaacaact gaacgttctg gtcctggcga gcagcagcac
     8761 cgtggtcatg caggatgagt ccttcccagc ctgcaagatt gagttctgaa agaaccactc
     8821 tcccttcccc aaggatctgc tcccacaacc cccttagaga atggctgatg ctgagtcctt
     8881 tggggttgag ggacatggga gttgaggggg gcgaggggga caggatgtct agtgggaact
     8941 taggctgggc taaacgggag gggttgtgcc cccccttcat ccatgcctga aaggagtctc
     9001 aaaaccaaag gtaacaggat taggataggg ggagggtgca aaattaggat acaaggtcat
     9061 ctgatgcctg agaaccctgg agtgacaccc tctcttagca ctccctaatg ctggtgttgg
     9121 gtggggagtg aggatggata gagagcaacc tcctccctca tggagggaga tcatatcccc
     9181 aaccccaagg acctctttat cttaatctat gtatttagca tcccaaggaa ggatttccaa
     9241 tagtaattta tgtgacctgg gggcaggata ctgtcagtga ggttgccaga gctgcatcct
     9301 ttcctccatc tcccattccc ttccccacca gagtctgggt cccagcaggg ttctgggggt
     9361 atgctgctgc tacactgtcc cactgcttct ctccgtatct gaatgtttca atccaaaact
     9421 tgaagctctt ttgaccaaca gattggtgag agaagaaagg agcttatcct cccggcccct
     9481 gcttcatacc attcacatcc cagagctgtg cccagaccag gcctactggg cagcacaaag
     9541 gagcaaggag agcccagccc caatcgcaga cttcttccaa gctccctgac cttatgaagt
     9601 tttcacccac ccattccaac tctcctgatc ccttctcata cctgcttggc ttatctgcat
     9661 gtggtcccct gctgtggcct ggtgtgtaat gggttaaaaa gccactgcct gacatcctaa
     9721 catttgacac cccagcaacg tgtgactctc ccaacattcc actatgccat cctgcagctg
     9781 aaatgggaac gctggctact tttccagccc cagactcttg gacagaggat cggggaggtg
     9841 gaggccatgc cagaggactt ggggaaaatg agagggagga aggaaagagg gagaggaagc
     9901 tgagctaggt cttaactcct actgagtgag atgaaaacag gccgaaaata ccaccccagg
     9961 agaggacctc accccaagca agccactaag cagccctgcc agacgactac gggactgagc
    10021 aatccagacg ctcttcaggg ctcagcttct ctgccaaatg actgtggaaa ccaaaacgag
    10081 accacctgtg ttcttcctag ctcccaccct ctcgtgctgc tgtgctctgc tccctcccac
    10141 acgtccctgc tacacttccc agctgctgtg acggagccac ctccaactct aacaataaat
    10201 caagttcatt aca
//
LOCUS       XM_032619343            5540 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X1, mRNA.
ACCESSION   XM_032619343
VERSION     XM_032619343.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5540
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5540
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             210..4784
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X1"
                     /protein_id="XP_032475234.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVMNMQCTGNLDLIPLRGRRRRRSGDLPRPSPAIGLQPRAVSTTHL
                     ASCTQVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQ
                     DYARSQGKKLPPASLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLH
                     NALSLRQVSEFLSRVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLR
                     QRSEKPPWYSSGPSSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQE
                     TIGNGAQELPIEGEQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPC
                     QEVPDISQPCQENHDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQ
                     PRQGVPVEVGRQVPGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQ
                     EASAIILLSQDIPEVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVP
                     EVQYPSSNVNPQSQSLACDQNSPLPPATCD"
     misc_feature    372..641
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <639..1220
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1377..2927
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    4113..>4394
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 ggcaccgaag agaagtcgtg ctttgattgg gccgctgtca ggtgtcgctg ccggcaggtt
       61 cgggtgcgcg agcgcaggga ggcgggaatc aacagtagcc ttccatgagg aactgccttt
      121 cccatttgct gctggagtta acggtttttc ctgctggcag aatcagggac atgccagcac
      181 tagcgggatg agtgggtgct ccggcgggga tgtggtcatt gccggccagt gagggcgaga
      241 gcgccacagc ccacttcttc cttggagctg gagatgaggg gctgggcacc cgtggaatag
      301 gcatgaggac agaagagagt gacagcgagc tccttgagga tgaggaggat gaagtgcctc
      361 ctgaacctca gatcattgtt ggcatctgtg ccatgaccaa gaaatccaag tccaagccaa
      421 tgacccaaat cctagagcga ctctgcagat ttgactacct gactgttatc atcctgggag
      481 aagatgtgat ccttaatgaa cctgtggaaa actggccatc ctgccattgc ctcatctctt
      541 tccactccaa aggctttcct ctggacaaag ctgttgctta ctccaagctt cgaaaccctt
      601 ttcttatcaa tgacctggct atgcagtatt acatccagga taggagggag gtgtaccgga
      661 tcctgcagga ggagggtatt gatctgcctc gatatgctgt gctcaaccgt gaccctgccc
      721 ggcctgagga gtgcaacctg attgagggtg aagatcaggt ggaggtaaat ggagccgtct
      781 ttcccaagcc ctttgtggag aagccagtga gtgcagagga ccacaatgtt tacatctact
      841 accccagctc agccggagga ggaagccagc gcctcttccg taagattggc agccggagca
      901 gcgtttactc tcctgagagc agcgtccgga agacagggtc atacatctat gaggagttta
      961 tgccaacaga tggcacagat gtcaaggtgt atacagtggg gccagactat gcccatgctg
     1021 aagccagaaa atctccagct ttggatggga aggtcgaaag agacagtgag gggaaagaaa
     1081 ttcgatatcc agtcatgctg actgccatgg aaaagctggt ggccaggaaa gtctgcgtag
     1141 cttttaagca aacggtctgt ggttttgacc tccttcgtgc caatggtcac tcctttgtgt
     1201 gtgatgtcaa cggcttcagt ttcgtcaaga attcgatgaa atactacgat gactgtgcca
     1261 agattctggg gaacaccata atgcgggagc ttgccccgca gttccagatc ccatggtcca
     1321 tccccacaga agctgaggac attcccattg tccctaccac atctggcacc atgatggaac
     1381 ttcgttgcgt cattgcaatt atccgtcacg gggatcgtac ccccaagcag aagatgaaga
     1441 tggaggtgac acacccaagg ttttttagtc tatttgaaaa acatggtggc tacaagacag
     1501 ggaaattaaa actgaagcgg cccgagcagc tacaggaggt gctggacatc acaaggctgc
     1561 tattggctga actggaaaaa gaaccaggtg gtgagattga ggagaagact gggaaactgg
     1621 agcagctgaa atctgtgctg gagatgtatg gtcacttctc aggcatcaac cggaaggtgc
     1681 agttgactta ctaccctcat ggagtaaaag cttctaatga ggggcaagat ccacaggggg
     1741 aggctctggc cccatcccta ttgctggtac tgaagtgggg tggagaactg acccctgctg
     1801 gccgtgttca ggctgaggag ctggggcgag ctttccgctg catgtaccct ggaggacagg
     1861 gtgactatgc tggcttcccc gggtgtgggc tgcttcgcct ccatagcacc ttccgccatg
     1921 atctcaagat ttatgcctct gatgagggcc gtgtccagat gactgctgca gcctttgcca
     1981 agggccttct agctctagaa ggggagctga cacccatttt ggtacaaatg gtgaagagtg
     2041 ccaacatgaa cgggctcttg gacagtgatg gcgattccct gagcagctgc cagcaccggg
     2101 tgaaggctcg gctgcaccac attttgcagc aggatgcacc ctttgcccct gaggattatg
     2161 atcagctggc tcccactgga agcacttccc tactcaactc catggctata atccagaatc
     2221 ctgtgaaggt ctgtgatcag gtatttgccc tgattgaaaa cctcactcac cagatccaga
     2281 aacggatgca ggaccccaag tctgtagacc tgcagcttta ccacagcgag acactagagc
     2341 taatgctaca gcgttggagc aagctggagc gtgactttcg acagaagagt gggcgctatg
     2401 atatcagtaa gattcctgac atctatgact gtgtcaagta tgatgtgcag cacaatggga
     2461 gtctgggact tcaaggaaca gcagagttgc tccgtctctc taaggcactg gctgatgtgg
     2521 tcattcccca ggagtacggg atcagtcggg aggagaaact ggaaattgct gtgggcttct
     2581 gtcttccact gttgcggaag atactacttg acctgcagag aacccacgag gatgagtctg
     2641 tcaacaagct gcaccccctg tactcccgag gagtgctctc cccaggccgc catgttcgaa
     2701 cacgtctcta ctttaccagt gaaagccacg tccactccct actcagtgtc ttccgttatg
     2761 ggggacttct tgatgagacc aaggatgcac aatggcagcg agctttggct tatcttagtg
     2821 ccatctcaga gctcaactac atgacccaga ttgtcatcat gctttatgaa gacaacacac
     2881 gggatccctt atcagaggag cggttccatg tggagctgca cttcagccct ggagtgaaag
     2941 gtgtcgagga agaaggcagt gccccaactg gctgtggatt ccgtccagcc tcttctgaga
     3001 atgaggagat gaaaacagac caaggcagca tggaggacct gtgcccgggg aaggcatcag
     3061 atgagccaga cggagcattg cagacctcac cccagccctc tgagggccct ggcctcccaa
     3121 agagatcacc cctcattcgt aaccgcaaag ccggctccat ggaggtcatg aacatgcagt
     3181 gcacggggaa cctggacctg atccccttgc ggggacggcg ccgccggagg tcaggggacc
     3241 tcccccggcc ttccccagcc atcggcctac agccccgggc tgtgtccacc actcacctgg
     3301 catcctgcac acaggtgctt tctgagactt cgtcctcgag gcctggtggc taccgactct
     3361 tttcatcttc acggccacca acggagatga agcagagcgg cctaggctca cagtgcacgg
     3421 ggctgttcag caccacagtg ctgggcggct cctccagcgc cccgaatctt caggactacg
     3481 cccgcagcca aggcaaaaag ctaccacctg ccagtctgaa gcaccgagat gagctcttgt
     3541 ttgtcccggc cgtaaaacga ttttctgtgt cgtttgcaaa gcatccgact aacggatttg
     3601 aagggtgctc catggtgcct accatttacc ccctggaaac actgcataat gccctttcgc
     3661 tgcgtcaagt gagtgaattc ttgagtagag tctgccagcg ccacactgat gcccaagcac
     3721 aggcatctgc agccctcttt gactctatgc acagcaacca gacctctgat agcccgtttt
     3781 ctccacctcg cactcttcat tcacctaccc tgcaactccg gcagcgctct gaaaagcccc
     3841 cttggtacag cagtggccct tccagcactg tgtccagcgc tggtccttcc tcccctactg
     3901 cagtggatgg taactgccat tttggcttca gtgatcaccc ctccctaaat tcacatgtga
     3961 ctgaagaaca tcaaggcctt gggctgctcc aggagaccat tgggaatgga gcacaagagc
     4021 tccccataga aggggaacaa gagccttttg aacgaaacca gtccccacag gaaccacctg
     4081 tggaaaccag ccagccatgc cagaaggttg ctgaggaggt cagccaacca tgccagaaca
     4141 tccctgaaga ggaggtcagc cagccatgcc aggaagtccc tgacatcagc cagccatgcc
     4201 aggagaacca tgatgatgtt aaccagactt gccaggaggt ccctcagatc agccaaccat
     4261 gccagaatgc cagccaactg taccagaaag tctctgagga agcttgcaag ctttgccagg
     4321 agaactctga ggaggtcaac cagccacgcc agggggtccc tgtggaggtt ggcaggcagg
     4381 tccctgggtt ccctgtaggg gttggtggcc tggcccagga aattcttgtg gaagtcggga
     4441 aaccagccca agggatccct gaggagctca gccagccatg ccaggaattc tctggggaca
     4501 ttggcaggct ggcccaagag gcttctgcaa tcattttgtt gtctcaggac atcccagagg
     4561 ttgataaacc atcccaagag ttccctgggg agggtgatct gcatgtccag gaggtcccag
     4621 aggaggtgaa tcagcagcag tcctatgtgt tccctgagtt gattgaccag ctgtctggag
     4681 aggatgttcc tgaagtccag tatccatcta gcaatgtaaa ccctcagagc cagtctctag
     4741 cctgtgacca gaactcaccc cttccaccag caacatgtga ttaatcattt tctcatttgt
     4801 ggtgtcacac tataccagac atttgagcta gcaaattttt ctgttggcta actcacccgc
     4861 cagcattaag gccttggatc tcaccagagg tgtctgagga agcagtcctc ttggcatgaa
     4921 gcatacctgt gccagagctg ggcttgggga ggagccaact tcaggttaaa gcagctgttg
     4981 acttctcacc cagccattag acttgaaaac gatttccttc aagaggtaaa tgggtctatc
     5041 attacctaac tttctctgat catcccagga aatcccagat tggtaaagga actgccactt
     5101 aactgctgaa gacaacacct ggggatagca agtgcaaaag gggactccaa ggtctctact
     5161 tttccagaaa atattcacaa cttttcaagg tacccttaga ccatatgcgc attcagggga
     5221 ctcttgtctt tgttagtatc ctcaggtggg cccaggatgg ctgtctgaaa tgtctgggaa
     5281 aaaagagttc ctttcccaaa caaatatccg tcatggccac aaatttttag attgggctta
     5341 tggatgtttc cgtatcatcc ccaggtgccc tctctgccct agtcctgttc ctctgggcaa
     5401 tagctctagg gaaaaatagg tattagattg ctgtgaaaat ttcagagtaa ctacttaaaa
     5461 tgctctgagg gttcttggcc aatctgtaaa gctgggcctc cttttgttgt gggactatat
     5521 ggcttaggag atattgtagt
//
LOCUS       XM_032619350            5513 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X2, mRNA.
ACCESSION   XM_032619350
VERSION     XM_032619350.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5513
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5513
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             183..4757
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X1"
                     /protein_id="XP_032475241.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVMNMQCTGNLDLIPLRGRRRRRSGDLPRPSPAIGLQPRAVSTTHL
                     ASCTQVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQ
                     DYARSQGKKLPPASLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLH
                     NALSLRQVSEFLSRVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLR
                     QRSEKPPWYSSGPSSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQE
                     TIGNGAQELPIEGEQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPC
                     QEVPDISQPCQENHDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQ
                     PRQGVPVEVGRQVPGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQ
                     EASAIILLSQDIPEVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVP
                     EVQYPSSNVNPQSQSLACDQNSPLPPATCD"
     misc_feature    345..614
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <612..1193
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1350..2900
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    4086..>4367
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 taaggttgtg aggttccatt tgaatccttc tcagttctgt tttcccctct gctcagagga
       61 atcaacagta gccttccatg aggaactgcc tttcccattt gctgctggag ttaacggttt
      121 ttcctgctgg cagaatcagg gacatgccag cactagcggg atgagtgggt gctccggcgg
      181 ggatgtggtc attgccggcc agtgagggcg agagcgccac agcccacttc ttccttggag
      241 ctggagatga ggggctgggc acccgtggaa taggcatgag gacagaagag agtgacagcg
      301 agctccttga ggatgaggag gatgaagtgc ctcctgaacc tcagatcatt gttggcatct
      361 gtgccatgac caagaaatcc aagtccaagc caatgaccca aatcctagag cgactctgca
      421 gatttgacta cctgactgtt atcatcctgg gagaagatgt gatccttaat gaacctgtgg
      481 aaaactggcc atcctgccat tgcctcatct ctttccactc caaaggcttt cctctggaca
      541 aagctgttgc ttactccaag cttcgaaacc cttttcttat caatgacctg gctatgcagt
      601 attacatcca ggataggagg gaggtgtacc ggatcctgca ggaggagggt attgatctgc
      661 ctcgatatgc tgtgctcaac cgtgaccctg cccggcctga ggagtgcaac ctgattgagg
      721 gtgaagatca ggtggaggta aatggagccg tctttcccaa gccctttgtg gagaagccag
      781 tgagtgcaga ggaccacaat gtttacatct actaccccag ctcagccgga ggaggaagcc
      841 agcgcctctt ccgtaagatt ggcagccgga gcagcgttta ctctcctgag agcagcgtcc
      901 ggaagacagg gtcatacatc tatgaggagt ttatgccaac agatggcaca gatgtcaagg
      961 tgtatacagt ggggccagac tatgcccatg ctgaagccag aaaatctcca gctttggatg
     1021 ggaaggtcga aagagacagt gaggggaaag aaattcgata tccagtcatg ctgactgcca
     1081 tggaaaagct ggtggccagg aaagtctgcg tagcttttaa gcaaacggtc tgtggttttg
     1141 acctccttcg tgccaatggt cactcctttg tgtgtgatgt caacggcttc agtttcgtca
     1201 agaattcgat gaaatactac gatgactgtg ccaagattct ggggaacacc ataatgcggg
     1261 agcttgcccc gcagttccag atcccatggt ccatccccac agaagctgag gacattccca
     1321 ttgtccctac cacatctggc accatgatgg aacttcgttg cgtcattgca attatccgtc
     1381 acggggatcg tacccccaag cagaagatga agatggaggt gacacaccca aggtttttta
     1441 gtctatttga aaaacatggt ggctacaaga cagggaaatt aaaactgaag cggcccgagc
     1501 agctacagga ggtgctggac atcacaaggc tgctattggc tgaactggaa aaagaaccag
     1561 gtggtgagat tgaggagaag actgggaaac tggagcagct gaaatctgtg ctggagatgt
     1621 atggtcactt ctcaggcatc aaccggaagg tgcagttgac ttactaccct catggagtaa
     1681 aagcttctaa tgaggggcaa gatccacagg gggaggctct ggccccatcc ctattgctgg
     1741 tactgaagtg gggtggagaa ctgacccctg ctggccgtgt tcaggctgag gagctggggc
     1801 gagctttccg ctgcatgtac cctggaggac agggtgacta tgctggcttc cccgggtgtg
     1861 ggctgcttcg cctccatagc accttccgcc atgatctcaa gatttatgcc tctgatgagg
     1921 gccgtgtcca gatgactgct gcagcctttg ccaagggcct tctagctcta gaaggggagc
     1981 tgacacccat tttggtacaa atggtgaaga gtgccaacat gaacgggctc ttggacagtg
     2041 atggcgattc cctgagcagc tgccagcacc gggtgaaggc tcggctgcac cacattttgc
     2101 agcaggatgc accctttgcc cctgaggatt atgatcagct ggctcccact ggaagcactt
     2161 ccctactcaa ctccatggct ataatccaga atcctgtgaa ggtctgtgat caggtatttg
     2221 ccctgattga aaacctcact caccagatcc agaaacggat gcaggacccc aagtctgtag
     2281 acctgcagct ttaccacagc gagacactag agctaatgct acagcgttgg agcaagctgg
     2341 agcgtgactt tcgacagaag agtgggcgct atgatatcag taagattcct gacatctatg
     2401 actgtgtcaa gtatgatgtg cagcacaatg ggagtctggg acttcaagga acagcagagt
     2461 tgctccgtct ctctaaggca ctggctgatg tggtcattcc ccaggagtac gggatcagtc
     2521 gggaggagaa actggaaatt gctgtgggct tctgtcttcc actgttgcgg aagatactac
     2581 ttgacctgca gagaacccac gaggatgagt ctgtcaacaa gctgcacccc ctgtactccc
     2641 gaggagtgct ctccccaggc cgccatgttc gaacacgtct ctactttacc agtgaaagcc
     2701 acgtccactc cctactcagt gtcttccgtt atgggggact tcttgatgag accaaggatg
     2761 cacaatggca gcgagctttg gcttatctta gtgccatctc agagctcaac tacatgaccc
     2821 agattgtcat catgctttat gaagacaaca cacgggatcc cttatcagag gagcggttcc
     2881 atgtggagct gcacttcagc cctggagtga aaggtgtcga ggaagaaggc agtgccccaa
     2941 ctggctgtgg attccgtcca gcctcttctg agaatgagga gatgaaaaca gaccaaggca
     3001 gcatggagga cctgtgcccg gggaaggcat cagatgagcc agacggagca ttgcagacct
     3061 caccccagcc ctctgagggc cctggcctcc caaagagatc acccctcatt cgtaaccgca
     3121 aagccggctc catggaggtc atgaacatgc agtgcacggg gaacctggac ctgatcccct
     3181 tgcggggacg gcgccgccgg aggtcagggg acctcccccg gccttcccca gccatcggcc
     3241 tacagccccg ggctgtgtcc accactcacc tggcatcctg cacacaggtg ctttctgaga
     3301 cttcgtcctc gaggcctggt ggctaccgac tcttttcatc ttcacggcca ccaacggaga
     3361 tgaagcagag cggcctaggc tcacagtgca cggggctgtt cagcaccaca gtgctgggcg
     3421 gctcctccag cgccccgaat cttcaggact acgcccgcag ccaaggcaaa aagctaccac
     3481 ctgccagtct gaagcaccga gatgagctct tgtttgtccc ggccgtaaaa cgattttctg
     3541 tgtcgtttgc aaagcatccg actaacggat ttgaagggtg ctccatggtg cctaccattt
     3601 accccctgga aacactgcat aatgcccttt cgctgcgtca agtgagtgaa ttcttgagta
     3661 gagtctgcca gcgccacact gatgcccaag cacaggcatc tgcagccctc tttgactcta
     3721 tgcacagcaa ccagacctct gatagcccgt tttctccacc tcgcactctt cattcaccta
     3781 ccctgcaact ccggcagcgc tctgaaaagc ccccttggta cagcagtggc ccttccagca
     3841 ctgtgtccag cgctggtcct tcctccccta ctgcagtgga tggtaactgc cattttggct
     3901 tcagtgatca cccctcccta aattcacatg tgactgaaga acatcaaggc cttgggctgc
     3961 tccaggagac cattgggaat ggagcacaag agctccccat agaaggggaa caagagcctt
     4021 ttgaacgaaa ccagtcccca caggaaccac ctgtggaaac cagccagcca tgccagaagg
     4081 ttgctgagga ggtcagccaa ccatgccaga acatccctga agaggaggtc agccagccat
     4141 gccaggaagt ccctgacatc agccagccat gccaggagaa ccatgatgat gttaaccaga
     4201 cttgccagga ggtccctcag atcagccaac catgccagaa tgccagccaa ctgtaccaga
     4261 aagtctctga ggaagcttgc aagctttgcc aggagaactc tgaggaggtc aaccagccac
     4321 gccagggggt ccctgtggag gttggcaggc aggtccctgg gttccctgta ggggttggtg
     4381 gcctggccca ggaaattctt gtggaagtcg ggaaaccagc ccaagggatc cctgaggagc
     4441 tcagccagcc atgccaggaa ttctctgggg acattggcag gctggcccaa gaggcttctg
     4501 caatcatttt gttgtctcag gacatcccag aggttgataa accatcccaa gagttccctg
     4561 gggagggtga tctgcatgtc caggaggtcc cagaggaggt gaatcagcag cagtcctatg
     4621 tgttccctga gttgattgac cagctgtctg gagaggatgt tcctgaagtc cagtatccat
     4681 ctagcaatgt aaaccctcag agccagtctc tagcctgtga ccagaactca ccccttccac
     4741 cagcaacatg tgattaatca ttttctcatt tgtggtgtca cactatacca gacatttgag
     4801 ctagcaaatt tttctgttgg ctaactcacc cgccagcatt aaggccttgg atctcaccag
     4861 aggtgtctga ggaagcagtc ctcttggcat gaagcatacc tgtgccagag ctgggcttgg
     4921 ggaggagcca acttcaggtt aaagcagctg ttgacttctc acccagccat tagacttgaa
     4981 aacgatttcc ttcaagaggt aaatgggtct atcattacct aactttctct gatcatccca
     5041 ggaaatccca gattggtaaa ggaactgcca cttaactgct gaagacaaca cctggggata
     5101 gcaagtgcaa aaggggactc caaggtctct acttttccag aaaatattca caacttttca
     5161 aggtaccctt agaccatatg cgcattcagg ggactcttgt ctttgttagt atcctcaggt
     5221 gggcccagga tggctgtctg aaatgtctgg gaaaaaagag ttcctttccc aaacaaatat
     5281 ccgtcatggc cacaaatttt tagattgggc ttatggatgt ttccgtatca tccccaggtg
     5341 ccctctctgc cctagtcctg ttcctctggg caatagctct agggaaaaat aggtattaga
     5401 ttgctgtgaa aatttcagag taactactta aaatgctctg agggttcttg gccaatctgt
     5461 aaagctgggc ctccttttgt tgtgggacta tatggcttag gagatattgt agt
//
LOCUS       XM_032619356            5391 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X3, mRNA.
ACCESSION   XM_032619356
VERSION     XM_032619356.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5391
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5391
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             61..4635
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X1"
                     /protein_id="XP_032475247.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVMNMQCTGNLDLIPLRGRRRRRSGDLPRPSPAIGLQPRAVSTTHL
                     ASCTQVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQ
                     DYARSQGKKLPPASLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLH
                     NALSLRQVSEFLSRVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLR
                     QRSEKPPWYSSGPSSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQE
                     TIGNGAQELPIEGEQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPC
                     QEVPDISQPCQENHDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQ
                     PRQGVPVEVGRQVPGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQ
                     EASAIILLSQDIPEVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVP
                     EVQYPSSNVNPQSQSLACDQNSPLPPATCD"
     misc_feature    223..492
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <490..1071
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1228..2778
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    3964..>4245
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 gcaggttcgg gtgcgcgagc gcagggaggc ggagcgggat gagtgggtgc tccggcgggg
       61 atgtggtcat tgccggccag tgagggcgag agcgccacag cccacttctt ccttggagct
      121 ggagatgagg ggctgggcac ccgtggaata ggcatgagga cagaagagag tgacagcgag
      181 ctccttgagg atgaggagga tgaagtgcct cctgaacctc agatcattgt tggcatctgt
      241 gccatgacca agaaatccaa gtccaagcca atgacccaaa tcctagagcg actctgcaga
      301 tttgactacc tgactgttat catcctggga gaagatgtga tccttaatga acctgtggaa
      361 aactggccat cctgccattg cctcatctct ttccactcca aaggctttcc tctggacaaa
      421 gctgttgctt actccaagct tcgaaaccct tttcttatca atgacctggc tatgcagtat
      481 tacatccagg ataggaggga ggtgtaccgg atcctgcagg aggagggtat tgatctgcct
      541 cgatatgctg tgctcaaccg tgaccctgcc cggcctgagg agtgcaacct gattgagggt
      601 gaagatcagg tggaggtaaa tggagccgtc tttcccaagc cctttgtgga gaagccagtg
      661 agtgcagagg accacaatgt ttacatctac taccccagct cagccggagg aggaagccag
      721 cgcctcttcc gtaagattgg cagccggagc agcgtttact ctcctgagag cagcgtccgg
      781 aagacagggt catacatcta tgaggagttt atgccaacag atggcacaga tgtcaaggtg
      841 tatacagtgg ggccagacta tgcccatgct gaagccagaa aatctccagc tttggatggg
      901 aaggtcgaaa gagacagtga ggggaaagaa attcgatatc cagtcatgct gactgccatg
      961 gaaaagctgg tggccaggaa agtctgcgta gcttttaagc aaacggtctg tggttttgac
     1021 ctccttcgtg ccaatggtca ctcctttgtg tgtgatgtca acggcttcag tttcgtcaag
     1081 aattcgatga aatactacga tgactgtgcc aagattctgg ggaacaccat aatgcgggag
     1141 cttgccccgc agttccagat cccatggtcc atccccacag aagctgagga cattcccatt
     1201 gtccctacca catctggcac catgatggaa cttcgttgcg tcattgcaat tatccgtcac
     1261 ggggatcgta cccccaagca gaagatgaag atggaggtga cacacccaag gttttttagt
     1321 ctatttgaaa aacatggtgg ctacaagaca gggaaattaa aactgaagcg gcccgagcag
     1381 ctacaggagg tgctggacat cacaaggctg ctattggctg aactggaaaa agaaccaggt
     1441 ggtgagattg aggagaagac tgggaaactg gagcagctga aatctgtgct ggagatgtat
     1501 ggtcacttct caggcatcaa ccggaaggtg cagttgactt actaccctca tggagtaaaa
     1561 gcttctaatg aggggcaaga tccacagggg gaggctctgg ccccatccct attgctggta
     1621 ctgaagtggg gtggagaact gacccctgct ggccgtgttc aggctgagga gctggggcga
     1681 gctttccgct gcatgtaccc tggaggacag ggtgactatg ctggcttccc cgggtgtggg
     1741 ctgcttcgcc tccatagcac cttccgccat gatctcaaga tttatgcctc tgatgagggc
     1801 cgtgtccaga tgactgctgc agcctttgcc aagggccttc tagctctaga aggggagctg
     1861 acacccattt tggtacaaat ggtgaagagt gccaacatga acgggctctt ggacagtgat
     1921 ggcgattccc tgagcagctg ccagcaccgg gtgaaggctc ggctgcacca cattttgcag
     1981 caggatgcac cctttgcccc tgaggattat gatcagctgg ctcccactgg aagcacttcc
     2041 ctactcaact ccatggctat aatccagaat cctgtgaagg tctgtgatca ggtatttgcc
     2101 ctgattgaaa acctcactca ccagatccag aaacggatgc aggaccccaa gtctgtagac
     2161 ctgcagcttt accacagcga gacactagag ctaatgctac agcgttggag caagctggag
     2221 cgtgactttc gacagaagag tgggcgctat gatatcagta agattcctga catctatgac
     2281 tgtgtcaagt atgatgtgca gcacaatggg agtctgggac ttcaaggaac agcagagttg
     2341 ctccgtctct ctaaggcact ggctgatgtg gtcattcccc aggagtacgg gatcagtcgg
     2401 gaggagaaac tggaaattgc tgtgggcttc tgtcttccac tgttgcggaa gatactactt
     2461 gacctgcaga gaacccacga ggatgagtct gtcaacaagc tgcaccccct gtactcccga
     2521 ggagtgctct ccccaggccg ccatgttcga acacgtctct actttaccag tgaaagccac
     2581 gtccactccc tactcagtgt cttccgttat gggggacttc ttgatgagac caaggatgca
     2641 caatggcagc gagctttggc ttatcttagt gccatctcag agctcaacta catgacccag
     2701 attgtcatca tgctttatga agacaacaca cgggatccct tatcagagga gcggttccat
     2761 gtggagctgc acttcagccc tggagtgaaa ggtgtcgagg aagaaggcag tgccccaact
     2821 ggctgtggat tccgtccagc ctcttctgag aatgaggaga tgaaaacaga ccaaggcagc
     2881 atggaggacc tgtgcccggg gaaggcatca gatgagccag acggagcatt gcagacctca
     2941 ccccagccct ctgagggccc tggcctccca aagagatcac ccctcattcg taaccgcaaa
     3001 gccggctcca tggaggtcat gaacatgcag tgcacgggga acctggacct gatccccttg
     3061 cggggacggc gccgccggag gtcaggggac ctcccccggc cttccccagc catcggccta
     3121 cagccccggg ctgtgtccac cactcacctg gcatcctgca cacaggtgct ttctgagact
     3181 tcgtcctcga ggcctggtgg ctaccgactc ttttcatctt cacggccacc aacggagatg
     3241 aagcagagcg gcctaggctc acagtgcacg gggctgttca gcaccacagt gctgggcggc
     3301 tcctccagcg ccccgaatct tcaggactac gcccgcagcc aaggcaaaaa gctaccacct
     3361 gccagtctga agcaccgaga tgagctcttg tttgtcccgg ccgtaaaacg attttctgtg
     3421 tcgtttgcaa agcatccgac taacggattt gaagggtgct ccatggtgcc taccatttac
     3481 cccctggaaa cactgcataa tgccctttcg ctgcgtcaag tgagtgaatt cttgagtaga
     3541 gtctgccagc gccacactga tgcccaagca caggcatctg cagccctctt tgactctatg
     3601 cacagcaacc agacctctga tagcccgttt tctccacctc gcactcttca ttcacctacc
     3661 ctgcaactcc ggcagcgctc tgaaaagccc ccttggtaca gcagtggccc ttccagcact
     3721 gtgtccagcg ctggtccttc ctcccctact gcagtggatg gtaactgcca ttttggcttc
     3781 agtgatcacc cctccctaaa ttcacatgtg actgaagaac atcaaggcct tgggctgctc
     3841 caggagacca ttgggaatgg agcacaagag ctccccatag aaggggaaca agagcctttt
     3901 gaacgaaacc agtccccaca ggaaccacct gtggaaacca gccagccatg ccagaaggtt
     3961 gctgaggagg tcagccaacc atgccagaac atccctgaag aggaggtcag ccagccatgc
     4021 caggaagtcc ctgacatcag ccagccatgc caggagaacc atgatgatgt taaccagact
     4081 tgccaggagg tccctcagat cagccaacca tgccagaatg ccagccaact gtaccagaaa
     4141 gtctctgagg aagcttgcaa gctttgccag gagaactctg aggaggtcaa ccagccacgc
     4201 cagggggtcc ctgtggaggt tggcaggcag gtccctgggt tccctgtagg ggttggtggc
     4261 ctggcccagg aaattcttgt ggaagtcggg aaaccagccc aagggatccc tgaggagctc
     4321 agccagccat gccaggaatt ctctggggac attggcaggc tggcccaaga ggcttctgca
     4381 atcattttgt tgtctcagga catcccagag gttgataaac catcccaaga gttccctggg
     4441 gagggtgatc tgcatgtcca ggaggtccca gaggaggtga atcagcagca gtcctatgtg
     4501 ttccctgagt tgattgacca gctgtctgga gaggatgttc ctgaagtcca gtatccatct
     4561 agcaatgtaa accctcagag ccagtctcta gcctgtgacc agaactcacc ccttccacca
     4621 gcaacatgtg attaatcatt ttctcatttg tggtgtcaca ctataccaga catttgagct
     4681 agcaaatttt tctgttggct aactcacccg ccagcattaa ggccttggat ctcaccagag
     4741 gtgtctgagg aagcagtcct cttggcatga agcatacctg tgccagagct gggcttgggg
     4801 aggagccaac ttcaggttaa agcagctgtt gacttctcac ccagccatta gacttgaaaa
     4861 cgatttcctt caagaggtaa atgggtctat cattacctaa ctttctctga tcatcccagg
     4921 aaatcccaga ttggtaaagg aactgccact taactgctga agacaacacc tggggatagc
     4981 aagtgcaaaa ggggactcca aggtctctac ttttccagaa aatattcaca acttttcaag
     5041 gtacccttag accatatgcg cattcagggg actcttgtct ttgttagtat cctcaggtgg
     5101 gcccaggatg gctgtctgaa atgtctggga aaaaagagtt cctttcccaa acaaatatcc
     5161 gtcatggcca caaattttta gattgggctt atggatgttt ccgtatcatc cccaggtgcc
     5221 ctctctgccc tagtcctgtt cctctgggca atagctctag ggaaaaatag gtattagatt
     5281 gctgtgaaaa tttcagagta actacttaaa atgctctgag ggttcttggc caatctgtaa
     5341 agctgggcct ccttttgttg tgggactata tggcttagga gatattgtag t
//
LOCUS       XM_032619362            5516 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X4, mRNA.
ACCESSION   XM_032619362
VERSION     XM_032619362.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5516
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5516
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             210..4760
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X2"
                     /protein_id="XP_032475253.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDEYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQR
                     ALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEEGSAPTGC
                     GFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKRSPLIRNRK
                     AGSMEVMNMQCTGNLDLIPLRGRRRRRSGDLPRPSPAIGLQPRAVSTTHLASCTQVLS
                     ETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARSQGK
                     KLPPASLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQV
                     SEFLSRVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLRQRSEKPPW
                     YSSGPSSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQETIGNGAQE
                     LPIEGEQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPCQEVPDISQ
                     PCQENHDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQPRQGVPVE
                     VGRQVPGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQEASAIILL
                     SQDIPEVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVPEVQYPSSN
                     VNPQSQSLACDQNSPLPPATCD"
     misc_feature    372..641
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <639..1220
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1377..2903
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    4089..>4370
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 ggcaccgaag agaagtcgtg ctttgattgg gccgctgtca ggtgtcgctg ccggcaggtt
       61 cgggtgcgcg agcgcaggga ggcgggaatc aacagtagcc ttccatgagg aactgccttt
      121 cccatttgct gctggagtta acggtttttc ctgctggcag aatcagggac atgccagcac
      181 tagcgggatg agtgggtgct ccggcgggga tgtggtcatt gccggccagt gagggcgaga
      241 gcgccacagc ccacttcttc cttggagctg gagatgaggg gctgggcacc cgtggaatag
      301 gcatgaggac agaagagagt gacagcgagc tccttgagga tgaggaggat gaagtgcctc
      361 ctgaacctca gatcattgtt ggcatctgtg ccatgaccaa gaaatccaag tccaagccaa
      421 tgacccaaat cctagagcga ctctgcagat ttgactacct gactgttatc atcctgggag
      481 aagatgtgat ccttaatgaa cctgtggaaa actggccatc ctgccattgc ctcatctctt
      541 tccactccaa aggctttcct ctggacaaag ctgttgctta ctccaagctt cgaaaccctt
      601 ttcttatcaa tgacctggct atgcagtatt acatccagga taggagggag gtgtaccgga
      661 tcctgcagga ggagggtatt gatctgcctc gatatgctgt gctcaaccgt gaccctgccc
      721 ggcctgagga gtgcaacctg attgagggtg aagatcaggt ggaggtaaat ggagccgtct
      781 ttcccaagcc ctttgtggag aagccagtga gtgcagagga ccacaatgtt tacatctact
      841 accccagctc agccggagga ggaagccagc gcctcttccg taagattggc agccggagca
      901 gcgtttactc tcctgagagc agcgtccgga agacagggtc atacatctat gaggagttta
      961 tgccaacaga tggcacagat gtcaaggtgt atacagtggg gccagactat gcccatgctg
     1021 aagccagaaa atctccagct ttggatggga aggtcgaaag agacagtgag gggaaagaaa
     1081 ttcgatatcc agtcatgctg actgccatgg aaaagctggt ggccaggaaa gtctgcgtag
     1141 cttttaagca aacggtctgt ggttttgacc tccttcgtgc caatggtcac tcctttgtgt
     1201 gtgatgtcaa cggcttcagt ttcgtcaaga attcgatgaa atactacgat gactgtgcca
     1261 agattctggg gaacaccata atgcgggagc ttgccccgca gttccagatc ccatggtcca
     1321 tccccacaga agctgaggac attcccattg tccctaccac atctggcacc atgatggaac
     1381 ttcgttgcgt cattgcaatt atccgtcacg gggatcgtac ccccaagcag aagatgaaga
     1441 tggaggtgac acacccaagg ttttttagtc tatttgaaaa acatggtggc tacaagacag
     1501 ggaaattaaa actgaagcgg cccgagcagc tacaggaggt gctggacatc acaaggctgc
     1561 tattggctga actggaaaaa gaaccaggtg gtgagattga ggagaagact gggaaactgg
     1621 agcagctgaa atctgtgctg gagatgtatg gtcacttctc aggcatcaac cggaaggtgc
     1681 agttgactta ctaccctcat ggagtaaaag cttctaatga ggggcaagat ccacaggggg
     1741 aggctctggc cccatcccta ttgctggtac tgaagtgggg tggagaactg acccctgctg
     1801 gccgtgttca ggctgaggag ctggggcgag ctttccgctg catgtaccct ggaggacagg
     1861 gtgactatgc tggcttcccc gggtgtgggc tgcttcgcct ccatagcacc ttccgccatg
     1921 atctcaagat ttatgcctct gatgagggcc gtgtccagat gactgctgca gcctttgcca
     1981 agggccttct agctctagaa ggggagctga cacccatttt ggtacaaatg gtgaagagtg
     2041 ccaacatgaa cgggctcttg gacagtgatg gcgattccct gagcagctgc cagcaccggg
     2101 tgaaggctcg gctgcaccac attttgcagc aggatgcacc ctttgcccct gaggattatg
     2161 atcagctggc tcccactgga agcacttccc tactcaactc catggctata atccagaatc
     2221 ctgtgaaggt ctgtgatcag gtatttgccc tgattgaaaa cctcactcac cagatccaga
     2281 aacggatgca ggaccccaag tctgtagacc tgcagcttta ccacagcgag acactagagc
     2341 taatgctaca gcgttggagc aagctggagc gtgactttcg acagaagagt gggcgctatg
     2401 atatcagtaa gattcctgac atctatgact gtgtcaagta tgatgtgcag cacaatggga
     2461 gtctgggact tcaaggaaca gcagagttgc tccgtctctc taaggcactg gctgatgtgg
     2521 tcattcccca ggagtacggg atcagtcggg aggagaaact ggaaattgct gtgggcttct
     2581 gtcttccact gttgcggaag atactacttg acctgcagag aacccacgag gatgagtact
     2641 cccgaggagt gctctcccca ggccgccatg ttcgaacacg tctctacttt accagtgaaa
     2701 gccacgtcca ctccctactc agtgtcttcc gttatggggg acttcttgat gagaccaagg
     2761 atgcacaatg gcagcgagct ttggcttatc ttagtgccat ctcagagctc aactacatga
     2821 cccagattgt catcatgctt tatgaagaca acacacggga tcccttatca gaggagcggt
     2881 tccatgtgga gctgcacttc agccctggag tgaaaggtgt cgaggaagaa ggcagtgccc
     2941 caactggctg tggattccgt ccagcctctt ctgagaatga ggagatgaaa acagaccaag
     3001 gcagcatgga ggacctgtgc ccggggaagg catcagatga gccagacgga gcattgcaga
     3061 cctcacccca gccctctgag ggccctggcc tcccaaagag atcacccctc attcgtaacc
     3121 gcaaagccgg ctccatggag gtcatgaaca tgcagtgcac ggggaacctg gacctgatcc
     3181 ccttgcgggg acggcgccgc cggaggtcag gggacctccc ccggccttcc ccagccatcg
     3241 gcctacagcc ccgggctgtg tccaccactc acctggcatc ctgcacacag gtgctttctg
     3301 agacttcgtc ctcgaggcct ggtggctacc gactcttttc atcttcacgg ccaccaacgg
     3361 agatgaagca gagcggccta ggctcacagt gcacggggct gttcagcacc acagtgctgg
     3421 gcggctcctc cagcgccccg aatcttcagg actacgcccg cagccaaggc aaaaagctac
     3481 cacctgccag tctgaagcac cgagatgagc tcttgtttgt cccggccgta aaacgatttt
     3541 ctgtgtcgtt tgcaaagcat ccgactaacg gatttgaagg gtgctccatg gtgcctacca
     3601 tttaccccct ggaaacactg cataatgccc tttcgctgcg tcaagtgagt gaattcttga
     3661 gtagagtctg ccagcgccac actgatgccc aagcacaggc atctgcagcc ctctttgact
     3721 ctatgcacag caaccagacc tctgatagcc cgttttctcc acctcgcact cttcattcac
     3781 ctaccctgca actccggcag cgctctgaaa agcccccttg gtacagcagt ggcccttcca
     3841 gcactgtgtc cagcgctggt ccttcctccc ctactgcagt ggatggtaac tgccattttg
     3901 gcttcagtga tcacccctcc ctaaattcac atgtgactga agaacatcaa ggccttgggc
     3961 tgctccagga gaccattggg aatggagcac aagagctccc catagaaggg gaacaagagc
     4021 cttttgaacg aaaccagtcc ccacaggaac cacctgtgga aaccagccag ccatgccaga
     4081 aggttgctga ggaggtcagc caaccatgcc agaacatccc tgaagaggag gtcagccagc
     4141 catgccagga agtccctgac atcagccagc catgccagga gaaccatgat gatgttaacc
     4201 agacttgcca ggaggtccct cagatcagcc aaccatgcca gaatgccagc caactgtacc
     4261 agaaagtctc tgaggaagct tgcaagcttt gccaggagaa ctctgaggag gtcaaccagc
     4321 cacgccaggg ggtccctgtg gaggttggca ggcaggtccc tgggttccct gtaggggttg
     4381 gtggcctggc ccaggaaatt cttgtggaag tcgggaaacc agcccaaggg atccctgagg
     4441 agctcagcca gccatgccag gaattctctg gggacattgg caggctggcc caagaggctt
     4501 ctgcaatcat tttgttgtct caggacatcc cagaggttga taaaccatcc caagagttcc
     4561 ctggggaggg tgatctgcat gtccaggagg tcccagagga ggtgaatcag cagcagtcct
     4621 atgtgttccc tgagttgatt gaccagctgt ctggagagga tgttcctgaa gtccagtatc
     4681 catctagcaa tgtaaaccct cagagccagt ctctagcctg tgaccagaac tcaccccttc
     4741 caccagcaac atgtgattaa tcattttctc atttgtggtg tcacactata ccagacattt
     4801 gagctagcaa atttttctgt tggctaactc acccgccagc attaaggcct tggatctcac
     4861 cagaggtgtc tgaggaagca gtcctcttgg catgaagcat acctgtgcca gagctgggct
     4921 tggggaggag ccaacttcag gttaaagcag ctgttgactt ctcacccagc cattagactt
     4981 gaaaacgatt tccttcaaga ggtaaatggg tctatcatta cctaactttc tctgatcatc
     5041 ccaggaaatc ccagattggt aaaggaactg ccacttaact gctgaagaca acacctgggg
     5101 atagcaagtg caaaagggga ctccaaggtc tctacttttc cagaaaatat tcacaacttt
     5161 tcaaggtacc cttagaccat atgcgcattc aggggactct tgtctttgtt agtatcctca
     5221 ggtgggccca ggatggctgt ctgaaatgtc tgggaaaaaa gagttccttt cccaaacaaa
     5281 tatccgtcat ggccacaaat ttttagattg ggcttatgga tgtttccgta tcatccccag
     5341 gtgccctctc tgccctagtc ctgttcctct gggcaatagc tctagggaaa aataggtatt
     5401 agattgctgt gaaaatttca gagtaactac ttaaaatgct ctgagggttc ttggccaatc
     5461 tgtaaagctg ggcctccttt tgttgtggga ctatatggct taggagatat tgtagt
//
LOCUS       XM_032619369            5792 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X5, mRNA.
ACCESSION   XM_032619369
VERSION     XM_032619369.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5792
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5792
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             210..4721
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X3"
                     /protein_id="XP_032475260.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVMNMQCTGNLDLIPLRGRRRRRSGDLPRPSPAIGLQPRAVSTTHL
                     ASCTQVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQ
                     DYARSQGKKLPPASLKHRDGFEGCSMVPTIYPLETLHNALSLRQVSEFLSRVCQRHTD
                     AQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLRQRSEKPPWYSSGPSSTVSSAG
                     PSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQETIGNGAQELPIEGEQEPFERN
                     QSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPCQEVPDISQPCQENHDDVNQTC
                     QEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQPRQGVPVEVGRQVPGFPVGVG
                     GLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQEASAIILLSQDIPEVDKPSQE
                     FPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVPEVQYPSSNVNPQSQSLACDQN
                     SPLPPATCD"
     misc_feature    372..641
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <639..1220
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1377..2927
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    4050..>4331
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 ggcaccgaag agaagtcgtg ctttgattgg gccgctgtca ggtgtcgctg ccggcaggtt
       61 cgggtgcgcg agcgcaggga ggcgggaatc aacagtagcc ttccatgagg aactgccttt
      121 cccatttgct gctggagtta acggtttttc ctgctggcag aatcagggac atgccagcac
      181 tagcgggatg agtgggtgct ccggcgggga tgtggtcatt gccggccagt gagggcgaga
      241 gcgccacagc ccacttcttc cttggagctg gagatgaggg gctgggcacc cgtggaatag
      301 gcatgaggac agaagagagt gacagcgagc tccttgagga tgaggaggat gaagtgcctc
      361 ctgaacctca gatcattgtt ggcatctgtg ccatgaccaa gaaatccaag tccaagccaa
      421 tgacccaaat cctagagcga ctctgcagat ttgactacct gactgttatc atcctgggag
      481 aagatgtgat ccttaatgaa cctgtggaaa actggccatc ctgccattgc ctcatctctt
      541 tccactccaa aggctttcct ctggacaaag ctgttgctta ctccaagctt cgaaaccctt
      601 ttcttatcaa tgacctggct atgcagtatt acatccagga taggagggag gtgtaccgga
      661 tcctgcagga ggagggtatt gatctgcctc gatatgctgt gctcaaccgt gaccctgccc
      721 ggcctgagga gtgcaacctg attgagggtg aagatcaggt ggaggtaaat ggagccgtct
      781 ttcccaagcc ctttgtggag aagccagtga gtgcagagga ccacaatgtt tacatctact
      841 accccagctc agccggagga ggaagccagc gcctcttccg taagattggc agccggagca
      901 gcgtttactc tcctgagagc agcgtccgga agacagggtc atacatctat gaggagttta
      961 tgccaacaga tggcacagat gtcaaggtgt atacagtggg gccagactat gcccatgctg
     1021 aagccagaaa atctccagct ttggatggga aggtcgaaag agacagtgag gggaaagaaa
     1081 ttcgatatcc agtcatgctg actgccatgg aaaagctggt ggccaggaaa gtctgcgtag
     1141 cttttaagca aacggtctgt ggttttgacc tccttcgtgc caatggtcac tcctttgtgt
     1201 gtgatgtcaa cggcttcagt ttcgtcaaga attcgatgaa atactacgat gactgtgcca
     1261 agattctggg gaacaccata atgcgggagc ttgccccgca gttccagatc ccatggtcca
     1321 tccccacaga agctgaggac attcccattg tccctaccac atctggcacc atgatggaac
     1381 ttcgttgcgt cattgcaatt atccgtcacg gggatcgtac ccccaagcag aagatgaaga
     1441 tggaggtgac acacccaagg ttttttagtc tatttgaaaa acatggtggc tacaagacag
     1501 ggaaattaaa actgaagcgg cccgagcagc tacaggaggt gctggacatc acaaggctgc
     1561 tattggctga actggaaaaa gaaccaggtg gtgagattga ggagaagact gggaaactgg
     1621 agcagctgaa atctgtgctg gagatgtatg gtcacttctc aggcatcaac cggaaggtgc
     1681 agttgactta ctaccctcat ggagtaaaag cttctaatga ggggcaagat ccacaggggg
     1741 aggctctggc cccatcccta ttgctggtac tgaagtgggg tggagaactg acccctgctg
     1801 gccgtgttca ggctgaggag ctggggcgag ctttccgctg catgtaccct ggaggacagg
     1861 gtgactatgc tggcttcccc gggtgtgggc tgcttcgcct ccatagcacc ttccgccatg
     1921 atctcaagat ttatgcctct gatgagggcc gtgtccagat gactgctgca gcctttgcca
     1981 agggccttct agctctagaa ggggagctga cacccatttt ggtacaaatg gtgaagagtg
     2041 ccaacatgaa cgggctcttg gacagtgatg gcgattccct gagcagctgc cagcaccggg
     2101 tgaaggctcg gctgcaccac attttgcagc aggatgcacc ctttgcccct gaggattatg
     2161 atcagctggc tcccactgga agcacttccc tactcaactc catggctata atccagaatc
     2221 ctgtgaaggt ctgtgatcag gtatttgccc tgattgaaaa cctcactcac cagatccaga
     2281 aacggatgca ggaccccaag tctgtagacc tgcagcttta ccacagcgag acactagagc
     2341 taatgctaca gcgttggagc aagctggagc gtgactttcg acagaagagt gggcgctatg
     2401 atatcagtaa gattcctgac atctatgact gtgtcaagta tgatgtgcag cacaatggga
     2461 gtctgggact tcaaggaaca gcagagttgc tccgtctctc taaggcactg gctgatgtgg
     2521 tcattcccca ggagtacggg atcagtcggg aggagaaact ggaaattgct gtgggcttct
     2581 gtcttccact gttgcggaag atactacttg acctgcagag aacccacgag gatgagtctg
     2641 tcaacaagct gcaccccctg tactcccgag gagtgctctc cccaggccgc catgttcgaa
     2701 cacgtctcta ctttaccagt gaaagccacg tccactccct actcagtgtc ttccgttatg
     2761 ggggacttct tgatgagacc aaggatgcac aatggcagcg agctttggct tatcttagtg
     2821 ccatctcaga gctcaactac atgacccaga ttgtcatcat gctttatgaa gacaacacac
     2881 gggatccctt atcagaggag cggttccatg tggagctgca cttcagccct ggagtgaaag
     2941 gtgtcgagga agaaggcagt gccccaactg gctgtggatt ccgtccagcc tcttctgaga
     3001 atgaggagat gaaaacagac caaggcagca tggaggacct gtgcccgggg aaggcatcag
     3061 atgagccaga cggagcattg cagacctcac cccagccctc tgagggccct ggcctcccaa
     3121 agagatcacc cctcattcgt aaccgcaaag ccggctccat ggaggtcatg aacatgcagt
     3181 gcacggggaa cctggacctg atccccttgc ggggacggcg ccgccggagg tcaggggacc
     3241 tcccccggcc ttccccagcc atcggcctac agccccgggc tgtgtccacc actcacctgg
     3301 catcctgcac acaggtgctt tctgagactt cgtcctcgag gcctggtggc taccgactct
     3361 tttcatcttc acggccacca acggagatga agcagagcgg cctaggctca cagtgcacgg
     3421 ggctgttcag caccacagtg ctgggcggct cctccagcgc cccgaatctt caggactacg
     3481 cccgcagcca aggcaaaaag ctaccacctg ccagtctgaa gcaccgagat ggatttgaag
     3541 ggtgctccat ggtgcctacc atttaccccc tggaaacact gcataatgcc ctttcgctgc
     3601 gtcaagtgag tgaattcttg agtagagtct gccagcgcca cactgatgcc caagcacagg
     3661 catctgcagc cctctttgac tctatgcaca gcaaccagac ctctgatagc ccgttttctc
     3721 cacctcgcac tcttcattca cctaccctgc aactccggca gcgctctgaa aagccccctt
     3781 ggtacagcag tggcccttcc agcactgtgt ccagcgctgg tccttcctcc cctactgcag
     3841 tggatggtaa ctgccatttt ggcttcagtg atcacccctc cctaaattca catgtgactg
     3901 aagaacatca aggccttggg ctgctccagg agaccattgg gaatggagca caagagctcc
     3961 ccatagaagg ggaacaagag ccttttgaac gaaaccagtc cccacaggaa ccacctgtgg
     4021 aaaccagcca gccatgccag aaggttgctg aggaggtcag ccaaccatgc cagaacatcc
     4081 ctgaagagga ggtcagccag ccatgccagg aagtccctga catcagccag ccatgccagg
     4141 agaaccatga tgatgttaac cagacttgcc aggaggtccc tcagatcagc caaccatgcc
     4201 agaatgccag ccaactgtac cagaaagtct ctgaggaagc ttgcaagctt tgccaggaga
     4261 actctgagga ggtcaaccag ccacgccagg gggtccctgt ggaggttggc aggcaggtcc
     4321 ctgggttccc tgtaggggtt ggtggcctgg cccaggaaat tcttgtggaa gtcgggaaac
     4381 cagcccaagg gatccctgag gagctcagcc agccatgcca ggaattctct ggggacattg
     4441 gcaggctggc ccaagaggct tctgcaatca ttttgttgtc tcaggacatc ccagaggttg
     4501 ataaaccatc ccaagagttc cctggggagg gtgatctgca tgtccaggag gtcccagagg
     4561 aggtgaatca gcagcagtcc tatgtgttcc ctgagttgat tgaccagctg tctggagagg
     4621 atgttcctga agtccagtat ccatctagca atgtaaaccc tcagagccag tctctagcct
     4681 gtgaccagaa ctcacccctt ccaccagcaa catgtgatta atcattttct catttgtggt
     4741 gtcacactat accagacatt tgagctagca aatttttctg ttggctaact cacccgccag
     4801 cattaaggcc ttggatctca ccagaggtgt ctgaggaagc agtcctcttg gcatgaagca
     4861 tacctgtgcc agagctgggc ttggggagga gccaacttca ggttaaagca gctgttgact
     4921 tctcacccag ccattagact tgaaaacgat ttccttcaag aggtaaatgg gtctatcatt
     4981 acctaacttt ctctgatcat cccaggaaat cccagattgg taaaggaact gccacttaac
     5041 tgctgaagac aacacctggg gatagcaagt gcaaaagggg actccaaggt ctctactttt
     5101 ccagaaaata ttcacaactt ttcaaggtac ccttagacca tatgcgcatt caggggactc
     5161 ttgtctttgt tagtatcctc aggtgggccc aggatggctg tctgaaatgt ctgggaaaaa
     5221 agagttcctt tcccaaacaa atatccgtca tggccacaaa tttttagatt gggcttatgg
     5281 atgtttccgt atcatcccca ggtgccctct ctgccctagt cctgttcctc tgggcaatag
     5341 ctctagggaa aaataggtat tagattgctg tgaaaatttc agagtaacta cttaaaatgc
     5401 tctgagggtt cttggccaat ctgtaaagct gggcctcctt ttgttgtggg actatatggc
     5461 ttaggagata ttgtagtaga gaaaaatcag gttctatttt aagcaatcag cagagatcag
     5521 tattgtacag acatgagcaa agattatata tatatttctg tagtcgagtc agggacagac
     5581 tggccaaaga ccaaatactc cagggtcccc ataggatttg tcctcatatc attgtgtctt
     5641 taaggccagg tgtgattatg aagcttttcc caaagatctg gggatgggga tggggatggg
     5701 ggtgagtagg aggggtaatg tggtcattgg agttgggggc cggaacatta tgagtgctca
     5761 ataaatataa aataatgaga atagtcaacc at
//
LOCUS       XM_032619378            5695 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X6, mRNA.
ACCESSION   XM_032619378
VERSION     XM_032619378.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5695
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5695
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             210..4634
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X4"
                     /protein_id="XP_032475269.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGG
                     SSSAPNLQDYARSQGKKLPPASLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPT
                     IYPLETLHNALSLRQVSEFLSRVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTL
                     HSPTLQLRQRSEKPPWYSSGPSSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEH
                     QGLGLLQETIGNGAQELPIEGEQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIP
                     EEEVSQPCQEVPDISQPCQENHDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQ
                     ENSEEVNQPRQGVPVEVGRQVPGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFS
                     GDIGRLAQEASAIILLSQDIPEVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELID
                     QLSGEDVPEVQYPSSNVNPQSQSLACDQNSPLPPATCD"
     misc_feature    372..641
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <639..1220
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1377..2927
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    3963..>4244
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 ggcaccgaag agaagtcgtg ctttgattgg gccgctgtca ggtgtcgctg ccggcaggtt
       61 cgggtgcgcg agcgcaggga ggcgggaatc aacagtagcc ttccatgagg aactgccttt
      121 cccatttgct gctggagtta acggtttttc ctgctggcag aatcagggac atgccagcac
      181 tagcgggatg agtgggtgct ccggcgggga tgtggtcatt gccggccagt gagggcgaga
      241 gcgccacagc ccacttcttc cttggagctg gagatgaggg gctgggcacc cgtggaatag
      301 gcatgaggac agaagagagt gacagcgagc tccttgagga tgaggaggat gaagtgcctc
      361 ctgaacctca gatcattgtt ggcatctgtg ccatgaccaa gaaatccaag tccaagccaa
      421 tgacccaaat cctagagcga ctctgcagat ttgactacct gactgttatc atcctgggag
      481 aagatgtgat ccttaatgaa cctgtggaaa actggccatc ctgccattgc ctcatctctt
      541 tccactccaa aggctttcct ctggacaaag ctgttgctta ctccaagctt cgaaaccctt
      601 ttcttatcaa tgacctggct atgcagtatt acatccagga taggagggag gtgtaccgga
      661 tcctgcagga ggagggtatt gatctgcctc gatatgctgt gctcaaccgt gaccctgccc
      721 ggcctgagga gtgcaacctg attgagggtg aagatcaggt ggaggtaaat ggagccgtct
      781 ttcccaagcc ctttgtggag aagccagtga gtgcagagga ccacaatgtt tacatctact
      841 accccagctc agccggagga ggaagccagc gcctcttccg taagattggc agccggagca
      901 gcgtttactc tcctgagagc agcgtccgga agacagggtc atacatctat gaggagttta
      961 tgccaacaga tggcacagat gtcaaggtgt atacagtggg gccagactat gcccatgctg
     1021 aagccagaaa atctccagct ttggatggga aggtcgaaag agacagtgag gggaaagaaa
     1081 ttcgatatcc agtcatgctg actgccatgg aaaagctggt ggccaggaaa gtctgcgtag
     1141 cttttaagca aacggtctgt ggttttgacc tccttcgtgc caatggtcac tcctttgtgt
     1201 gtgatgtcaa cggcttcagt ttcgtcaaga attcgatgaa atactacgat gactgtgcca
     1261 agattctggg gaacaccata atgcgggagc ttgccccgca gttccagatc ccatggtcca
     1321 tccccacaga agctgaggac attcccattg tccctaccac atctggcacc atgatggaac
     1381 ttcgttgcgt cattgcaatt atccgtcacg gggatcgtac ccccaagcag aagatgaaga
     1441 tggaggtgac acacccaagg ttttttagtc tatttgaaaa acatggtggc tacaagacag
     1501 ggaaattaaa actgaagcgg cccgagcagc tacaggaggt gctggacatc acaaggctgc
     1561 tattggctga actggaaaaa gaaccaggtg gtgagattga ggagaagact gggaaactgg
     1621 agcagctgaa atctgtgctg gagatgtatg gtcacttctc aggcatcaac cggaaggtgc
     1681 agttgactta ctaccctcat ggagtaaaag cttctaatga ggggcaagat ccacaggggg
     1741 aggctctggc cccatcccta ttgctggtac tgaagtgggg tggagaactg acccctgctg
     1801 gccgtgttca ggctgaggag ctggggcgag ctttccgctg catgtaccct ggaggacagg
     1861 gtgactatgc tggcttcccc gggtgtgggc tgcttcgcct ccatagcacc ttccgccatg
     1921 atctcaagat ttatgcctct gatgagggcc gtgtccagat gactgctgca gcctttgcca
     1981 agggccttct agctctagaa ggggagctga cacccatttt ggtacaaatg gtgaagagtg
     2041 ccaacatgaa cgggctcttg gacagtgatg gcgattccct gagcagctgc cagcaccggg
     2101 tgaaggctcg gctgcaccac attttgcagc aggatgcacc ctttgcccct gaggattatg
     2161 atcagctggc tcccactgga agcacttccc tactcaactc catggctata atccagaatc
     2221 ctgtgaaggt ctgtgatcag gtatttgccc tgattgaaaa cctcactcac cagatccaga
     2281 aacggatgca ggaccccaag tctgtagacc tgcagcttta ccacagcgag acactagagc
     2341 taatgctaca gcgttggagc aagctggagc gtgactttcg acagaagagt gggcgctatg
     2401 atatcagtaa gattcctgac atctatgact gtgtcaagta tgatgtgcag cacaatggga
     2461 gtctgggact tcaaggaaca gcagagttgc tccgtctctc taaggcactg gctgatgtgg
     2521 tcattcccca ggagtacggg atcagtcggg aggagaaact ggaaattgct gtgggcttct
     2581 gtcttccact gttgcggaag atactacttg acctgcagag aacccacgag gatgagtctg
     2641 tcaacaagct gcaccccctg tactcccgag gagtgctctc cccaggccgc catgttcgaa
     2701 cacgtctcta ctttaccagt gaaagccacg tccactccct actcagtgtc ttccgttatg
     2761 ggggacttct tgatgagacc aaggatgcac aatggcagcg agctttggct tatcttagtg
     2821 ccatctcaga gctcaactac atgacccaga ttgtcatcat gctttatgaa gacaacacac
     2881 gggatccctt atcagaggag cggttccatg tggagctgca cttcagccct ggagtgaaag
     2941 gtgtcgagga agaaggcagt gccccaactg gctgtggatt ccgtccagcc tcttctgaga
     3001 atgaggagat gaaaacagac caaggcagca tggaggacct gtgcccgggg aaggcatcag
     3061 atgagccaga cggagcattg cagacctcac cccagccctc tgagggccct ggcctcccaa
     3121 agagatcacc cctcattcgt aaccgcaaag ccggctccat ggaggtgctt tctgagactt
     3181 cgtcctcgag gcctggtggc taccgactct tttcatcttc acggccacca acggagatga
     3241 agcagagcgg cctaggctca cagtgcacgg ggctgttcag caccacagtg ctgggcggct
     3301 cctccagcgc cccgaatctt caggactacg cccgcagcca aggcaaaaag ctaccacctg
     3361 ccagtctgaa gcaccgagat gagctcttgt ttgtcccggc cgtaaaacga ttttctgtgt
     3421 cgtttgcaaa gcatccgact aacggatttg aagggtgctc catggtgcct accatttacc
     3481 ccctggaaac actgcataat gccctttcgc tgcgtcaagt gagtgaattc ttgagtagag
     3541 tctgccagcg ccacactgat gcccaagcac aggcatctgc agccctcttt gactctatgc
     3601 acagcaacca gacctctgat agcccgtttt ctccacctcg cactcttcat tcacctaccc
     3661 tgcaactccg gcagcgctct gaaaagcccc cttggtacag cagtggccct tccagcactg
     3721 tgtccagcgc tggtccttcc tcccctactg cagtggatgg taactgccat tttggcttca
     3781 gtgatcaccc ctccctaaat tcacatgtga ctgaagaaca tcaaggcctt gggctgctcc
     3841 aggagaccat tgggaatgga gcacaagagc tccccataga aggggaacaa gagccttttg
     3901 aacgaaacca gtccccacag gaaccacctg tggaaaccag ccagccatgc cagaaggttg
     3961 ctgaggaggt cagccaacca tgccagaaca tccctgaaga ggaggtcagc cagccatgcc
     4021 aggaagtccc tgacatcagc cagccatgcc aggagaacca tgatgatgtt aaccagactt
     4081 gccaggaggt ccctcagatc agccaaccat gccagaatgc cagccaactg taccagaaag
     4141 tctctgagga agcttgcaag ctttgccagg agaactctga ggaggtcaac cagccacgcc
     4201 agggggtccc tgtggaggtt ggcaggcagg tccctgggtt ccctgtaggg gttggtggcc
     4261 tggcccagga aattcttgtg gaagtcggga aaccagccca agggatccct gaggagctca
     4321 gccagccatg ccaggaattc tctggggaca ttggcaggct ggcccaagag gcttctgcaa
     4381 tcattttgtt gtctcaggac atcccagagg ttgataaacc atcccaagag ttccctgggg
     4441 agggtgatct gcatgtccag gaggtcccag aggaggtgaa tcagcagcag tcctatgtgt
     4501 tccctgagtt gattgaccag ctgtctggag aggatgttcc tgaagtccag tatccatcta
     4561 gcaatgtaaa ccctcagagc cagtctctag cctgtgacca gaactcaccc cttccaccag
     4621 caacatgtga ttaatcattt tctcatttgt ggtgtcacac tataccagac atttgagcta
     4681 gcaaattttt ctgttggcta actcacccgc cagcattaag gccttggatc tcaccagagg
     4741 tgtctgagga agcagtcctc ttggcatgaa gcatacctgt gccagagctg ggcttgggga
     4801 ggagccaact tcaggttaaa gcagctgttg acttctcacc cagccattag acttgaaaac
     4861 gatttccttc aagaggtaaa tgggtctatc attacctaac tttctctgat catcccagga
     4921 aatcccagat tggtaaagga actgccactt aactgctgaa gacaacacct ggggatagca
     4981 agtgcaaaag gggactccaa ggtctctact tttccagaaa atattcacaa cttttcaagg
     5041 tacccttaga ccatatgcgc attcagggga ctcttgtctt tgttagtatc ctcaggtggg
     5101 cccaggatgg ctgtctgaaa tgtctgggaa aaaagagttc ctttcccaaa caaatatccg
     5161 tcatggccac aaatttttag attgggctta tggatgtttc cgtatcatcc ccaggtgccc
     5221 tctctgccct agtcctgttc ctctgggcaa tagctctagg gaaaaatagg tattagattg
     5281 ctgtgaaaat ttcagagtaa ctacttaaaa tgctctgagg gttcttggcc aatctgtaaa
     5341 gctgggcctc cttttgttgt gggactatat ggcttaggag atattgtagt agagaaaaat
     5401 caggttctat tttaagcaat cagcagagat cagtattgta cagacatgag caaagattat
     5461 atatatattt ctgtagtcga gtcagggaca gactggccaa agaccaaata ctccagggtc
     5521 cccataggat ttgtcctcat atcattgtgt ctttaaggcc aggtgtgatt atgaagcttt
     5581 tcccaaagat ctggggatgg ggatggggat gggggtgagt aggaggggta atgtggtcat
     5641 tggagttggg ggccggaaca ttatgagtgc tcaataaata taaaataatg agaat
//
LOCUS       XM_032619388            5671 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X7, mRNA.
ACCESSION   XM_032619388
VERSION     XM_032619388.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5671
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5671
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             210..4610
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X5"
                     /protein_id="XP_032475279.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDEYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQR
                     ALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEEGSAPTGC
                     GFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKRSPLIRNRK
                     AGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQ
                     DYARSQGKKLPPASLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLH
                     NALSLRQVSEFLSRVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLR
                     QRSEKPPWYSSGPSSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQE
                     TIGNGAQELPIEGEQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPC
                     QEVPDISQPCQENHDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQ
                     PRQGVPVEVGRQVPGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQ
                     EASAIILLSQDIPEVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVP
                     EVQYPSSNVNPQSQSLACDQNSPLPPATCD"
     misc_feature    372..641
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <639..1220
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1377..2903
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    3939..>4220
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 ggcaccgaag agaagtcgtg ctttgattgg gccgctgtca ggtgtcgctg ccggcaggtt
       61 cgggtgcgcg agcgcaggga ggcgggaatc aacagtagcc ttccatgagg aactgccttt
      121 cccatttgct gctggagtta acggtttttc ctgctggcag aatcagggac atgccagcac
      181 tagcgggatg agtgggtgct ccggcgggga tgtggtcatt gccggccagt gagggcgaga
      241 gcgccacagc ccacttcttc cttggagctg gagatgaggg gctgggcacc cgtggaatag
      301 gcatgaggac agaagagagt gacagcgagc tccttgagga tgaggaggat gaagtgcctc
      361 ctgaacctca gatcattgtt ggcatctgtg ccatgaccaa gaaatccaag tccaagccaa
      421 tgacccaaat cctagagcga ctctgcagat ttgactacct gactgttatc atcctgggag
      481 aagatgtgat ccttaatgaa cctgtggaaa actggccatc ctgccattgc ctcatctctt
      541 tccactccaa aggctttcct ctggacaaag ctgttgctta ctccaagctt cgaaaccctt
      601 ttcttatcaa tgacctggct atgcagtatt acatccagga taggagggag gtgtaccgga
      661 tcctgcagga ggagggtatt gatctgcctc gatatgctgt gctcaaccgt gaccctgccc
      721 ggcctgagga gtgcaacctg attgagggtg aagatcaggt ggaggtaaat ggagccgtct
      781 ttcccaagcc ctttgtggag aagccagtga gtgcagagga ccacaatgtt tacatctact
      841 accccagctc agccggagga ggaagccagc gcctcttccg taagattggc agccggagca
      901 gcgtttactc tcctgagagc agcgtccgga agacagggtc atacatctat gaggagttta
      961 tgccaacaga tggcacagat gtcaaggtgt atacagtggg gccagactat gcccatgctg
     1021 aagccagaaa atctccagct ttggatggga aggtcgaaag agacagtgag gggaaagaaa
     1081 ttcgatatcc agtcatgctg actgccatgg aaaagctggt ggccaggaaa gtctgcgtag
     1141 cttttaagca aacggtctgt ggttttgacc tccttcgtgc caatggtcac tcctttgtgt
     1201 gtgatgtcaa cggcttcagt ttcgtcaaga attcgatgaa atactacgat gactgtgcca
     1261 agattctggg gaacaccata atgcgggagc ttgccccgca gttccagatc ccatggtcca
     1321 tccccacaga agctgaggac attcccattg tccctaccac atctggcacc atgatggaac
     1381 ttcgttgcgt cattgcaatt atccgtcacg gggatcgtac ccccaagcag aagatgaaga
     1441 tggaggtgac acacccaagg ttttttagtc tatttgaaaa acatggtggc tacaagacag
     1501 ggaaattaaa actgaagcgg cccgagcagc tacaggaggt gctggacatc acaaggctgc
     1561 tattggctga actggaaaaa gaaccaggtg gtgagattga ggagaagact gggaaactgg
     1621 agcagctgaa atctgtgctg gagatgtatg gtcacttctc aggcatcaac cggaaggtgc
     1681 agttgactta ctaccctcat ggagtaaaag cttctaatga ggggcaagat ccacaggggg
     1741 aggctctggc cccatcccta ttgctggtac tgaagtgggg tggagaactg acccctgctg
     1801 gccgtgttca ggctgaggag ctggggcgag ctttccgctg catgtaccct ggaggacagg
     1861 gtgactatgc tggcttcccc gggtgtgggc tgcttcgcct ccatagcacc ttccgccatg
     1921 atctcaagat ttatgcctct gatgagggcc gtgtccagat gactgctgca gcctttgcca
     1981 agggccttct agctctagaa ggggagctga cacccatttt ggtacaaatg gtgaagagtg
     2041 ccaacatgaa cgggctcttg gacagtgatg gcgattccct gagcagctgc cagcaccggg
     2101 tgaaggctcg gctgcaccac attttgcagc aggatgcacc ctttgcccct gaggattatg
     2161 atcagctggc tcccactgga agcacttccc tactcaactc catggctata atccagaatc
     2221 ctgtgaaggt ctgtgatcag gtatttgccc tgattgaaaa cctcactcac cagatccaga
     2281 aacggatgca ggaccccaag tctgtagacc tgcagcttta ccacagcgag acactagagc
     2341 taatgctaca gcgttggagc aagctggagc gtgactttcg acagaagagt gggcgctatg
     2401 atatcagtaa gattcctgac atctatgact gtgtcaagta tgatgtgcag cacaatggga
     2461 gtctgggact tcaaggaaca gcagagttgc tccgtctctc taaggcactg gctgatgtgg
     2521 tcattcccca ggagtacggg atcagtcggg aggagaaact ggaaattgct gtgggcttct
     2581 gtcttccact gttgcggaag atactacttg acctgcagag aacccacgag gatgagtact
     2641 cccgaggagt gctctcccca ggccgccatg ttcgaacacg tctctacttt accagtgaaa
     2701 gccacgtcca ctccctactc agtgtcttcc gttatggggg acttcttgat gagaccaagg
     2761 atgcacaatg gcagcgagct ttggcttatc ttagtgccat ctcagagctc aactacatga
     2821 cccagattgt catcatgctt tatgaagaca acacacggga tcccttatca gaggagcggt
     2881 tccatgtgga gctgcacttc agccctggag tgaaaggtgt cgaggaagaa ggcagtgccc
     2941 caactggctg tggattccgt ccagcctctt ctgagaatga ggagatgaaa acagaccaag
     3001 gcagcatgga ggacctgtgc ccggggaagg catcagatga gccagacgga gcattgcaga
     3061 cctcacccca gccctctgag ggccctggcc tcccaaagag atcacccctc attcgtaacc
     3121 gcaaagccgg ctccatggag gtgctttctg agacttcgtc ctcgaggcct ggtggctacc
     3181 gactcttttc atcttcacgg ccaccaacgg agatgaagca gagcggccta ggctcacagt
     3241 gcacggggct gttcagcacc acagtgctgg gcggctcctc cagcgccccg aatcttcagg
     3301 actacgcccg cagccaaggc aaaaagctac cacctgccag tctgaagcac cgagatgagc
     3361 tcttgtttgt cccggccgta aaacgatttt ctgtgtcgtt tgcaaagcat ccgactaacg
     3421 gatttgaagg gtgctccatg gtgcctacca tttaccccct ggaaacactg cataatgccc
     3481 tttcgctgcg tcaagtgagt gaattcttga gtagagtctg ccagcgccac actgatgccc
     3541 aagcacaggc atctgcagcc ctctttgact ctatgcacag caaccagacc tctgatagcc
     3601 cgttttctcc acctcgcact cttcattcac ctaccctgca actccggcag cgctctgaaa
     3661 agcccccttg gtacagcagt ggcccttcca gcactgtgtc cagcgctggt ccttcctccc
     3721 ctactgcagt ggatggtaac tgccattttg gcttcagtga tcacccctcc ctaaattcac
     3781 atgtgactga agaacatcaa ggccttgggc tgctccagga gaccattggg aatggagcac
     3841 aagagctccc catagaaggg gaacaagagc cttttgaacg aaaccagtcc ccacaggaac
     3901 cacctgtgga aaccagccag ccatgccaga aggttgctga ggaggtcagc caaccatgcc
     3961 agaacatccc tgaagaggag gtcagccagc catgccagga agtccctgac atcagccagc
     4021 catgccagga gaaccatgat gatgttaacc agacttgcca ggaggtccct cagatcagcc
     4081 aaccatgcca gaatgccagc caactgtacc agaaagtctc tgaggaagct tgcaagcttt
     4141 gccaggagaa ctctgaggag gtcaaccagc cacgccaggg ggtccctgtg gaggttggca
     4201 ggcaggtccc tgggttccct gtaggggttg gtggcctggc ccaggaaatt cttgtggaag
     4261 tcgggaaacc agcccaaggg atccctgagg agctcagcca gccatgccag gaattctctg
     4321 gggacattgg caggctggcc caagaggctt ctgcaatcat tttgttgtct caggacatcc
     4381 cagaggttga taaaccatcc caagagttcc ctggggaggg tgatctgcat gtccaggagg
     4441 tcccagagga ggtgaatcag cagcagtcct atgtgttccc tgagttgatt gaccagctgt
     4501 ctggagagga tgttcctgaa gtccagtatc catctagcaa tgtaaaccct cagagccagt
     4561 ctctagcctg tgaccagaac tcaccccttc caccagcaac atgtgattaa tcattttctc
     4621 atttgtggtg tcacactata ccagacattt gagctagcaa atttttctgt tggctaactc
     4681 acccgccagc attaaggcct tggatctcac cagaggtgtc tgaggaagca gtcctcttgg
     4741 catgaagcat acctgtgcca gagctgggct tggggaggag ccaacttcag gttaaagcag
     4801 ctgttgactt ctcacccagc cattagactt gaaaacgatt tccttcaaga ggtaaatggg
     4861 tctatcatta cctaactttc tctgatcatc ccaggaaatc ccagattggt aaaggaactg
     4921 ccacttaact gctgaagaca acacctgggg atagcaagtg caaaagggga ctccaaggtc
     4981 tctacttttc cagaaaatat tcacaacttt tcaaggtacc cttagaccat atgcgcattc
     5041 aggggactct tgtctttgtt agtatcctca ggtgggccca ggatggctgt ctgaaatgtc
     5101 tgggaaaaaa gagttccttt cccaaacaaa tatccgtcat ggccacaaat ttttagattg
     5161 ggcttatgga tgtttccgta tcatccccag gtgccctctc tgccctagtc ctgttcctct
     5221 gggcaatagc tctagggaaa aataggtatt agattgctgt gaaaatttca gagtaactac
     5281 ttaaaatgct ctgagggttc ttggccaatc tgtaaagctg ggcctccttt tgttgtggga
     5341 ctatatggct taggagatat tgtagtagag aaaaatcagg ttctatttta agcaatcagc
     5401 agagatcagt attgtacaga catgagcaaa gattatatat atatttctgt agtcgagtca
     5461 gggacagact ggccaaagac caaatactcc agggtcccca taggatttgt cctcatatca
     5521 ttgtgtcttt aaggccaggt gtgattatga agcttttccc aaagatctgg ggatggggat
     5581 ggggatgggg gtgagtagga ggggtaatgt ggtcattgga gttgggggcc ggaacattat
     5641 gagtgctcaa taaatataaa ataatgagaa t
//
LOCUS       XM_032619398            5642 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X8, mRNA.
ACCESSION   XM_032619398
VERSION     XM_032619398.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5642
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5642
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 14 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             210..4571
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X6"
                     /protein_id="XP_032475289.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGG
                     SSSAPNLQDYARSQGKKLPPASLKHRDGFEGCSMVPTIYPLETLHNALSLRQVSEFLS
                     RVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLRQRSEKPPWYSSGP
                     SSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQETIGNGAQELPIEG
                     EQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPCQEVPDISQPCQEN
                     HDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQPRQGVPVEVGRQV
                     PGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQEASAIILLSQDIP
                     EVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVPEVQYPSSNVNPQS
                     QSLACDQNSPLPPATCD"
     misc_feature    372..641
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <639..1220
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1377..2927
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    3900..>4181
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 ggcaccgaag agaagtcgtg ctttgattgg gccgctgtca ggtgtcgctg ccggcaggtt
       61 cgggtgcgcg agcgcaggga ggcgggaatc aacagtagcc ttccatgagg aactgccttt
      121 cccatttgct gctggagtta acggtttttc ctgctggcag aatcagggac atgccagcac
      181 tagcgggatg agtgggtgct ccggcgggga tgtggtcatt gccggccagt gagggcgaga
      241 gcgccacagc ccacttcttc cttggagctg gagatgaggg gctgggcacc cgtggaatag
      301 gcatgaggac agaagagagt gacagcgagc tccttgagga tgaggaggat gaagtgcctc
      361 ctgaacctca gatcattgtt ggcatctgtg ccatgaccaa gaaatccaag tccaagccaa
      421 tgacccaaat cctagagcga ctctgcagat ttgactacct gactgttatc atcctgggag
      481 aagatgtgat ccttaatgaa cctgtggaaa actggccatc ctgccattgc ctcatctctt
      541 tccactccaa aggctttcct ctggacaaag ctgttgctta ctccaagctt cgaaaccctt
      601 ttcttatcaa tgacctggct atgcagtatt acatccagga taggagggag gtgtaccgga
      661 tcctgcagga ggagggtatt gatctgcctc gatatgctgt gctcaaccgt gaccctgccc
      721 ggcctgagga gtgcaacctg attgagggtg aagatcaggt ggaggtaaat ggagccgtct
      781 ttcccaagcc ctttgtggag aagccagtga gtgcagagga ccacaatgtt tacatctact
      841 accccagctc agccggagga ggaagccagc gcctcttccg taagattggc agccggagca
      901 gcgtttactc tcctgagagc agcgtccgga agacagggtc atacatctat gaggagttta
      961 tgccaacaga tggcacagat gtcaaggtgt atacagtggg gccagactat gcccatgctg
     1021 aagccagaaa atctccagct ttggatggga aggtcgaaag agacagtgag gggaaagaaa
     1081 ttcgatatcc agtcatgctg actgccatgg aaaagctggt ggccaggaaa gtctgcgtag
     1141 cttttaagca aacggtctgt ggttttgacc tccttcgtgc caatggtcac tcctttgtgt
     1201 gtgatgtcaa cggcttcagt ttcgtcaaga attcgatgaa atactacgat gactgtgcca
     1261 agattctggg gaacaccata atgcgggagc ttgccccgca gttccagatc ccatggtcca
     1321 tccccacaga agctgaggac attcccattg tccctaccac atctggcacc atgatggaac
     1381 ttcgttgcgt cattgcaatt atccgtcacg gggatcgtac ccccaagcag aagatgaaga
     1441 tggaggtgac acacccaagg ttttttagtc tatttgaaaa acatggtggc tacaagacag
     1501 ggaaattaaa actgaagcgg cccgagcagc tacaggaggt gctggacatc acaaggctgc
     1561 tattggctga actggaaaaa gaaccaggtg gtgagattga ggagaagact gggaaactgg
     1621 agcagctgaa atctgtgctg gagatgtatg gtcacttctc aggcatcaac cggaaggtgc
     1681 agttgactta ctaccctcat ggagtaaaag cttctaatga ggggcaagat ccacaggggg
     1741 aggctctggc cccatcccta ttgctggtac tgaagtgggg tggagaactg acccctgctg
     1801 gccgtgttca ggctgaggag ctggggcgag ctttccgctg catgtaccct ggaggacagg
     1861 gtgactatgc tggcttcccc gggtgtgggc tgcttcgcct ccatagcacc ttccgccatg
     1921 atctcaagat ttatgcctct gatgagggcc gtgtccagat gactgctgca gcctttgcca
     1981 agggccttct agctctagaa ggggagctga cacccatttt ggtacaaatg gtgaagagtg
     2041 ccaacatgaa cgggctcttg gacagtgatg gcgattccct gagcagctgc cagcaccggg
     2101 tgaaggctcg gctgcaccac attttgcagc aggatgcacc ctttgcccct gaggattatg
     2161 atcagctggc tcccactgga agcacttccc tactcaactc catggctata atccagaatc
     2221 ctgtgaaggt ctgtgatcag gtatttgccc tgattgaaaa cctcactcac cagatccaga
     2281 aacggatgca ggaccccaag tctgtagacc tgcagcttta ccacagcgag acactagagc
     2341 taatgctaca gcgttggagc aagctggagc gtgactttcg acagaagagt gggcgctatg
     2401 atatcagtaa gattcctgac atctatgact gtgtcaagta tgatgtgcag cacaatggga
     2461 gtctgggact tcaaggaaca gcagagttgc tccgtctctc taaggcactg gctgatgtgg
     2521 tcattcccca ggagtacggg atcagtcggg aggagaaact ggaaattgct gtgggcttct
     2581 gtcttccact gttgcggaag atactacttg acctgcagag aacccacgag gatgagtctg
     2641 tcaacaagct gcaccccctg tactcccgag gagtgctctc cccaggccgc catgttcgaa
     2701 cacgtctcta ctttaccagt gaaagccacg tccactccct actcagtgtc ttccgttatg
     2761 ggggacttct tgatgagacc aaggatgcac aatggcagcg agctttggct tatcttagtg
     2821 ccatctcaga gctcaactac atgacccaga ttgtcatcat gctttatgaa gacaacacac
     2881 gggatccctt atcagaggag cggttccatg tggagctgca cttcagccct ggagtgaaag
     2941 gtgtcgagga agaaggcagt gccccaactg gctgtggatt ccgtccagcc tcttctgaga
     3001 atgaggagat gaaaacagac caaggcagca tggaggacct gtgcccgggg aaggcatcag
     3061 atgagccaga cggagcattg cagacctcac cccagccctc tgagggccct ggcctcccaa
     3121 agagatcacc cctcattcgt aaccgcaaag ccggctccat ggaggtgctt tctgagactt
     3181 cgtcctcgag gcctggtggc taccgactct tttcatcttc acggccacca acggagatga
     3241 agcagagcgg cctaggctca cagtgcacgg ggctgttcag caccacagtg ctgggcggct
     3301 cctccagcgc cccgaatctt caggactacg cccgcagcca aggcaaaaag ctaccacctg
     3361 ccagtctgaa gcaccgagat ggatttgaag ggtgctccat ggtgcctacc atttaccccc
     3421 tggaaacact gcataatgcc ctttcgctgc gtcaagtgag tgaattcttg agtagagtct
     3481 gccagcgcca cactgatgcc caagcacagg catctgcagc cctctttgac tctatgcaca
     3541 gcaaccagac ctctgatagc ccgttttctc cacctcgcac tcttcattca cctaccctgc
     3601 aactccggca gcgctctgaa aagccccctt ggtacagcag tggcccttcc agcactgtgt
     3661 ccagcgctgg tccttcctcc cctactgcag tggatggtaa ctgccatttt ggcttcagtg
     3721 atcacccctc cctaaattca catgtgactg aagaacatca aggccttggg ctgctccagg
     3781 agaccattgg gaatggagca caagagctcc ccatagaagg ggaacaagag ccttttgaac
     3841 gaaaccagtc cccacaggaa ccacctgtgg aaaccagcca gccatgccag aaggttgctg
     3901 aggaggtcag ccaaccatgc cagaacatcc ctgaagagga ggtcagccag ccatgccagg
     3961 aagtccctga catcagccag ccatgccagg agaaccatga tgatgttaac cagacttgcc
     4021 aggaggtccc tcagatcagc caaccatgcc agaatgccag ccaactgtac cagaaagtct
     4081 ctgaggaagc ttgcaagctt tgccaggaga actctgagga ggtcaaccag ccacgccagg
     4141 gggtccctgt ggaggttggc aggcaggtcc ctgggttccc tgtaggggtt ggtggcctgg
     4201 cccaggaaat tcttgtggaa gtcgggaaac cagcccaagg gatccctgag gagctcagcc
     4261 agccatgcca ggaattctct ggggacattg gcaggctggc ccaagaggct tctgcaatca
     4321 ttttgttgtc tcaggacatc ccagaggttg ataaaccatc ccaagagttc cctggggagg
     4381 gtgatctgca tgtccaggag gtcccagagg aggtgaatca gcagcagtcc tatgtgttcc
     4441 ctgagttgat tgaccagctg tctggagagg atgttcctga agtccagtat ccatctagca
     4501 atgtaaaccc tcagagccag tctctagcct gtgaccagaa ctcacccctt ccaccagcaa
     4561 catgtgatta atcattttct catttgtggt gtcacactat accagacatt tgagctagca
     4621 aatttttctg ttggctaact cacccgccag cattaaggcc ttggatctca ccagaggtgt
     4681 ctgaggaagc agtcctcttg gcatgaagca tacctgtgcc agagctgggc ttggggagga
     4741 gccaacttca ggttaaagca gctgttgact tctcacccag ccattagact tgaaaacgat
     4801 ttccttcaag aggtaaatgg gtctatcatt acctaacttt ctctgatcat cccaggaaat
     4861 cccagattgg taaaggaact gccacttaac tgctgaagac aacacctggg gatagcaagt
     4921 gcaaaagggg actccaaggt ctctactttt ccagaaaata ttcacaactt ttcaaggtac
     4981 ccttagacca tatgcgcatt caggggactc ttgtctttgt tagtatcctc aggtgggccc
     5041 aggatggctg tctgaaatgt ctgggaaaaa agagttcctt tcccaaacaa atatccgtca
     5101 tggccacaaa tttttagatt gggcttatgg atgtttccgt atcatcccca ggtgccctct
     5161 ctgccctagt cctgttcctc tgggcaatag ctctagggaa aaataggtat tagattgctg
     5221 tgaaaatttc agagtaacta cttaaaatgc tctgagggtt cttggccaat ctgtaaagct
     5281 gggcctcctt ttgttgtggg actatatggc ttaggagata ttgtagtaga gaaaaatcag
     5341 gttctatttt aagcaatcag cagagatcag tattgtacag acatgagcaa agattatata
     5401 tatatttctg tagtcgagtc agggacagac tggccaaaga ccaaatactc cagggtcccc
     5461 ataggatttg tcctcatatc attgtgtctt taaggccagg tgtgattatg aagcttttcc
     5521 caaagatctg gggatgggga tggggatggg ggtgagtagg aggggtaatg tggtcattgg
     5581 agttgggggc cggaacatta tgagtgctca ataaatataa aataatgaga atagtcaacc
     5641 at
//
LOCUS       XM_032619406            5533 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X9, mRNA.
ACCESSION   XM_032619406
VERSION     XM_032619406.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5533
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5533
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 10
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             111..4472
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X6"
                     /protein_id="XP_032475297.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGG
                     SSSAPNLQDYARSQGKKLPPASLKHRDGFEGCSMVPTIYPLETLHNALSLRQVSEFLS
                     RVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLRQRSEKPPWYSSGP
                     SSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQETIGNGAQELPIEG
                     EQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPCQEVPDISQPCQEN
                     HDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQPRQGVPVEVGRQV
                     PGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQEASAIILLSQDIP
                     EVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVPEVQYPSSNVNPQS
                     QSLACDQNSPLPPATCD"
     misc_feature    273..542
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <540..1121
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1278..2828
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    3801..>4082
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 accgaagaga agtcgtgctt tgattgggcc gctgtcaggt gtcgctgccg gcaggttcgg
       61 gtgcgcgagc gcagggaggc ggagcgggat gagtgggtgc tccggcgggg atgtggtcat
      121 tgccggccag tgagggcgag agcgccacag cccacttctt ccttggagct ggagatgagg
      181 ggctgggcac ccgtggaata ggcatgagga cagaagagag tgacagcgag ctccttgagg
      241 atgaggagga tgaagtgcct cctgaacctc agatcattgt tggcatctgt gccatgacca
      301 agaaatccaa gtccaagcca atgacccaaa tcctagagcg actctgcaga tttgactacc
      361 tgactgttat catcctggga gaagatgtga tccttaatga acctgtggaa aactggccat
      421 cctgccattg cctcatctct ttccactcca aaggctttcc tctggacaaa gctgttgctt
      481 actccaagct tcgaaaccct tttcttatca atgacctggc tatgcagtat tacatccagg
      541 ataggaggga ggtgtaccgg atcctgcagg aggagggtat tgatctgcct cgatatgctg
      601 tgctcaaccg tgaccctgcc cggcctgagg agtgcaacct gattgagggt gaagatcagg
      661 tggaggtaaa tggagccgtc tttcccaagc cctttgtgga gaagccagtg agtgcagagg
      721 accacaatgt ttacatctac taccccagct cagccggagg aggaagccag cgcctcttcc
      781 gtaagattgg cagccggagc agcgtttact ctcctgagag cagcgtccgg aagacagggt
      841 catacatcta tgaggagttt atgccaacag atggcacaga tgtcaaggtg tatacagtgg
      901 ggccagacta tgcccatgct gaagccagaa aatctccagc tttggatggg aaggtcgaaa
      961 gagacagtga ggggaaagaa attcgatatc cagtcatgct gactgccatg gaaaagctgg
     1021 tggccaggaa agtctgcgta gcttttaagc aaacggtctg tggttttgac ctccttcgtg
     1081 ccaatggtca ctcctttgtg tgtgatgtca acggcttcag tttcgtcaag aattcgatga
     1141 aatactacga tgactgtgcc aagattctgg ggaacaccat aatgcgggag cttgccccgc
     1201 agttccagat cccatggtcc atccccacag aagctgagga cattcccatt gtccctacca
     1261 catctggcac catgatggaa cttcgttgcg tcattgcaat tatccgtcac ggggatcgta
     1321 cccccaagca gaagatgaag atggaggtga cacacccaag gttttttagt ctatttgaaa
     1381 aacatggtgg ctacaagaca gggaaattaa aactgaagcg gcccgagcag ctacaggagg
     1441 tgctggacat cacaaggctg ctattggctg aactggaaaa agaaccaggt ggtgagattg
     1501 aggagaagac tgggaaactg gagcagctga aatctgtgct ggagatgtat ggtcacttct
     1561 caggcatcaa ccggaaggtg cagttgactt actaccctca tggagtaaaa gcttctaatg
     1621 aggggcaaga tccacagggg gaggctctgg ccccatccct attgctggta ctgaagtggg
     1681 gtggagaact gacccctgct ggccgtgttc aggctgagga gctggggcga gctttccgct
     1741 gcatgtaccc tggaggacag ggtgactatg ctggcttccc cgggtgtggg ctgcttcgcc
     1801 tccatagcac cttccgccat gatctcaaga tttatgcctc tgatgagggc cgtgtccaga
     1861 tgactgctgc agcctttgcc aagggccttc tagctctaga aggggagctg acacccattt
     1921 tggtacaaat ggtgaagagt gccaacatga acgggctctt ggacagtgat ggcgattccc
     1981 tgagcagctg ccagcaccgg gtgaaggctc ggctgcacca cattttgcag caggatgcac
     2041 cctttgcccc tgaggattat gatcagctgg ctcccactgg aagcacttcc ctactcaact
     2101 ccatggctat aatccagaat cctgtgaagg tctgtgatca ggtatttgcc ctgattgaaa
     2161 acctcactca ccagatccag aaacggatgc aggaccccaa gtctgtagac ctgcagcttt
     2221 accacagcga gacactagag ctaatgctac agcgttggag caagctggag cgtgactttc
     2281 gacagaagag tgggcgctat gatatcagta agattcctga catctatgac tgtgtcaagt
     2341 atgatgtgca gcacaatggg agtctgggac ttcaaggaac agcagagttg ctccgtctct
     2401 ctaaggcact ggctgatgtg gtcattcccc aggagtacgg gatcagtcgg gaggagaaac
     2461 tggaaattgc tgtgggcttc tgtcttccac tgttgcggaa gatactactt gacctgcaga
     2521 gaacccacga ggatgagtct gtcaacaagc tgcaccccct gtactcccga ggagtgctct
     2581 ccccaggccg ccatgttcga acacgtctct actttaccag tgaaagccac gtccactccc
     2641 tactcagtgt cttccgttat gggggacttc ttgatgagac caaggatgca caatggcagc
     2701 gagctttggc ttatcttagt gccatctcag agctcaacta catgacccag attgtcatca
     2761 tgctttatga agacaacaca cgggatccct tatcagagga gcggttccat gtggagctgc
     2821 acttcagccc tggagtgaaa ggtgtcgagg aagaaggcag tgccccaact ggctgtggat
     2881 tccgtccagc ctcttctgag aatgaggaga tgaaaacaga ccaaggcagc atggaggacc
     2941 tgtgcccggg gaaggcatca gatgagccag acggagcatt gcagacctca ccccagccct
     3001 ctgagggccc tggcctccca aagagatcac ccctcattcg taaccgcaaa gccggctcca
     3061 tggaggtgct ttctgagact tcgtcctcga ggcctggtgg ctaccgactc ttttcatctt
     3121 cacggccacc aacggagatg aagcagagcg gcctaggctc acagtgcacg gggctgttca
     3181 gcaccacagt gctgggcggc tcctccagcg ccccgaatct tcaggactac gcccgcagcc
     3241 aaggcaaaaa gctaccacct gccagtctga agcaccgaga tggatttgaa gggtgctcca
     3301 tggtgcctac catttacccc ctggaaacac tgcataatgc cctttcgctg cgtcaagtga
     3361 gtgaattctt gagtagagtc tgccagcgcc acactgatgc ccaagcacag gcatctgcag
     3421 ccctctttga ctctatgcac agcaaccaga cctctgatag cccgttttct ccacctcgca
     3481 ctcttcattc acctaccctg caactccggc agcgctctga aaagccccct tggtacagca
     3541 gtggcccttc cagcactgtg tccagcgctg gtccttcctc ccctactgca gtggatggta
     3601 actgccattt tggcttcagt gatcacccct ccctaaattc acatgtgact gaagaacatc
     3661 aaggccttgg gctgctccag gagaccattg ggaatggagc acaagagctc cccatagaag
     3721 gggaacaaga gccttttgaa cgaaaccagt ccccacagga accacctgtg gaaaccagcc
     3781 agccatgcca gaaggttgct gaggaggtca gccaaccatg ccagaacatc cctgaagagg
     3841 aggtcagcca gccatgccag gaagtccctg acatcagcca gccatgccag gagaaccatg
     3901 atgatgttaa ccagacttgc caggaggtcc ctcagatcag ccaaccatgc cagaatgcca
     3961 gccaactgta ccagaaagtc tctgaggaag cttgcaagct ttgccaggag aactctgagg
     4021 aggtcaacca gccacgccag ggggtccctg tggaggttgg caggcaggtc cctgggttcc
     4081 ctgtaggggt tggtggcctg gcccaggaaa ttcttgtgga agtcgggaaa ccagcccaag
     4141 ggatccctga ggagctcagc cagccatgcc aggaattctc tggggacatt ggcaggctgg
     4201 cccaagaggc ttctgcaatc attttgttgt ctcaggacat cccagaggtt gataaaccat
     4261 cccaagagtt ccctggggag ggtgatctgc atgtccagga ggtcccagag gaggtgaatc
     4321 agcagcagtc ctatgtgttc cctgagttga ttgaccagct gtctggagag gatgttcctg
     4381 aagtccagta tccatctagc aatgtaaacc ctcagagcca gtctctagcc tgtgaccaga
     4441 actcacccct tccaccagca acatgtgatt aatcattttc tcatttgtgg tgtcacacta
     4501 taccagacat ttgagctagc aaatttttct gttggctaac tcacccgcca gcattaaggc
     4561 cttggatctc accagaggtg tctgaggaag cagtcctctt ggcatgaagc atacctgtgc
     4621 cagagctggg cttggggagg agccaacttc aggttaaagc agctgttgac ttctcaccca
     4681 gccattagac ttgaaaacga tttccttcaa gaggtaaatg ggtctatcat tacctaactt
     4741 tctctgatca tcccaggaaa tcccagattg gtaaaggaac tgccacttaa ctgctgaaga
     4801 caacacctgg ggatagcaag tgcaaaaggg gactccaagg tctctacttt tccagaaaat
     4861 attcacaact tttcaaggta cccttagacc atatgcgcat tcaggggact cttgtctttg
     4921 ttagtatcct caggtgggcc caggatggct gtctgaaatg tctgggaaaa aagagttcct
     4981 ttcccaaaca aatatccgtc atggccacaa atttttagat tgggcttatg gatgtttccg
     5041 tatcatcccc aggtgccctc tctgccctag tcctgttcct ctgggcaata gctctaggga
     5101 aaaataggta ttagattgct gtgaaaattt cagagtaact acttaaaatg ctctgagggt
     5161 tcttggccaa tctgtaaagc tgggcctcct tttgttgtgg gactatatgg cttaggagat
     5221 attgtagtag agaaaaatca ggttctattt taagcaatca gcagagatca gtattgtaca
     5281 gacatgagca aagattatat atatatttct gtagtcgagt cagggacaga ctggccaaag
     5341 accaaatact ccagggtccc cataggattt gtcctcatat cattgtgtct ttaaggccag
     5401 gtgtgattat gaagcttttc ccaaagatct ggggatgggg atggggatgg gggtgagtag
     5461 gaggggtaat gtggtcattg gagttggggg ccggaacatt atgagtgctc aataaatata
     5521 aaataatgag aat
//
LOCUS       XM_032619417            5608 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X10, mRNA.
ACCESSION   XM_032619417
VERSION     XM_032619417.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5608
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5608
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             210..4547
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X7"
                     /protein_id="XP_032475308.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDEYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQR
                     ALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEEGSAPTGC
                     GFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKRSPLIRNRK
                     AGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQ
                     DYARSQGKKLPPASLKHRDGFEGCSMVPTIYPLETLHNALSLRQVSEFLSRVCQRHTD
                     AQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTLQLRQRSEKPPWYSSGPSSTVSSAG
                     PSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGLLQETIGNGAQELPIEGEQEPFERN
                     QSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVSQPCQEVPDISQPCQENHDDVNQTC
                     QEVPQISQPCQNASQLYQKVSEEACKLCQENSEEVNQPRQGVPVEVGRQVPGFPVGVG
                     GLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGRLAQEASAIILLSQDIPEVDKPSQE
                     FPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGEDVPEVQYPSSNVNPQSQSLACDQN
                     SPLPPATCD"
     misc_feature    372..641
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <639..1220
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1377..2903
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    3876..>4157
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 ggcaccgaag agaagtcgtg ctttgattgg gccgctgtca ggtgtcgctg ccggcaggtt
       61 cgggtgcgcg agcgcaggga ggcgggaatc aacagtagcc ttccatgagg aactgccttt
      121 cccatttgct gctggagtta acggtttttc ctgctggcag aatcagggac atgccagcac
      181 tagcgggatg agtgggtgct ccggcgggga tgtggtcatt gccggccagt gagggcgaga
      241 gcgccacagc ccacttcttc cttggagctg gagatgaggg gctgggcacc cgtggaatag
      301 gcatgaggac agaagagagt gacagcgagc tccttgagga tgaggaggat gaagtgcctc
      361 ctgaacctca gatcattgtt ggcatctgtg ccatgaccaa gaaatccaag tccaagccaa
      421 tgacccaaat cctagagcga ctctgcagat ttgactacct gactgttatc atcctgggag
      481 aagatgtgat ccttaatgaa cctgtggaaa actggccatc ctgccattgc ctcatctctt
      541 tccactccaa aggctttcct ctggacaaag ctgttgctta ctccaagctt cgaaaccctt
      601 ttcttatcaa tgacctggct atgcagtatt acatccagga taggagggag gtgtaccgga
      661 tcctgcagga ggagggtatt gatctgcctc gatatgctgt gctcaaccgt gaccctgccc
      721 ggcctgagga gtgcaacctg attgagggtg aagatcaggt ggaggtaaat ggagccgtct
      781 ttcccaagcc ctttgtggag aagccagtga gtgcagagga ccacaatgtt tacatctact
      841 accccagctc agccggagga ggaagccagc gcctcttccg taagattggc agccggagca
      901 gcgtttactc tcctgagagc agcgtccgga agacagggtc atacatctat gaggagttta
      961 tgccaacaga tggcacagat gtcaaggtgt atacagtggg gccagactat gcccatgctg
     1021 aagccagaaa atctccagct ttggatggga aggtcgaaag agacagtgag gggaaagaaa
     1081 ttcgatatcc agtcatgctg actgccatgg aaaagctggt ggccaggaaa gtctgcgtag
     1141 cttttaagca aacggtctgt ggttttgacc tccttcgtgc caatggtcac tcctttgtgt
     1201 gtgatgtcaa cggcttcagt ttcgtcaaga attcgatgaa atactacgat gactgtgcca
     1261 agattctggg gaacaccata atgcgggagc ttgccccgca gttccagatc ccatggtcca
     1321 tccccacaga agctgaggac attcccattg tccctaccac atctggcacc atgatggaac
     1381 ttcgttgcgt cattgcaatt atccgtcacg gggatcgtac ccccaagcag aagatgaaga
     1441 tggaggtgac acacccaagg ttttttagtc tatttgaaaa acatggtggc tacaagacag
     1501 ggaaattaaa actgaagcgg cccgagcagc tacaggaggt gctggacatc acaaggctgc
     1561 tattggctga actggaaaaa gaaccaggtg gtgagattga ggagaagact gggaaactgg
     1621 agcagctgaa atctgtgctg gagatgtatg gtcacttctc aggcatcaac cggaaggtgc
     1681 agttgactta ctaccctcat ggagtaaaag cttctaatga ggggcaagat ccacaggggg
     1741 aggctctggc cccatcccta ttgctggtac tgaagtgggg tggagaactg acccctgctg
     1801 gccgtgttca ggctgaggag ctggggcgag ctttccgctg catgtaccct ggaggacagg
     1861 gtgactatgc tggcttcccc gggtgtgggc tgcttcgcct ccatagcacc ttccgccatg
     1921 atctcaagat ttatgcctct gatgagggcc gtgtccagat gactgctgca gcctttgcca
     1981 agggccttct agctctagaa ggggagctga cacccatttt ggtacaaatg gtgaagagtg
     2041 ccaacatgaa cgggctcttg gacagtgatg gcgattccct gagcagctgc cagcaccggg
     2101 tgaaggctcg gctgcaccac attttgcagc aggatgcacc ctttgcccct gaggattatg
     2161 atcagctggc tcccactgga agcacttccc tactcaactc catggctata atccagaatc
     2221 ctgtgaaggt ctgtgatcag gtatttgccc tgattgaaaa cctcactcac cagatccaga
     2281 aacggatgca ggaccccaag tctgtagacc tgcagcttta ccacagcgag acactagagc
     2341 taatgctaca gcgttggagc aagctggagc gtgactttcg acagaagagt gggcgctatg
     2401 atatcagtaa gattcctgac atctatgact gtgtcaagta tgatgtgcag cacaatggga
     2461 gtctgggact tcaaggaaca gcagagttgc tccgtctctc taaggcactg gctgatgtgg
     2521 tcattcccca ggagtacggg atcagtcggg aggagaaact ggaaattgct gtgggcttct
     2581 gtcttccact gttgcggaag atactacttg acctgcagag aacccacgag gatgagtact
     2641 cccgaggagt gctctcccca ggccgccatg ttcgaacacg tctctacttt accagtgaaa
     2701 gccacgtcca ctccctactc agtgtcttcc gttatggggg acttcttgat gagaccaagg
     2761 atgcacaatg gcagcgagct ttggcttatc ttagtgccat ctcagagctc aactacatga
     2821 cccagattgt catcatgctt tatgaagaca acacacggga tcccttatca gaggagcggt
     2881 tccatgtgga gctgcacttc agccctggag tgaaaggtgt cgaggaagaa ggcagtgccc
     2941 caactggctg tggattccgt ccagcctctt ctgagaatga ggagatgaaa acagaccaag
     3001 gcagcatgga ggacctgtgc ccggggaagg catcagatga gccagacgga gcattgcaga
     3061 cctcacccca gccctctgag ggccctggcc tcccaaagag atcacccctc attcgtaacc
     3121 gcaaagccgg ctccatggag gtgctttctg agacttcgtc ctcgaggcct ggtggctacc
     3181 gactcttttc atcttcacgg ccaccaacgg agatgaagca gagcggccta ggctcacagt
     3241 gcacggggct gttcagcacc acagtgctgg gcggctcctc cagcgccccg aatcttcagg
     3301 actacgcccg cagccaaggc aaaaagctac cacctgccag tctgaagcac cgagatggat
     3361 ttgaagggtg ctccatggtg cctaccattt accccctgga aacactgcat aatgcccttt
     3421 cgctgcgtca agtgagtgaa ttcttgagta gagtctgcca gcgccacact gatgcccaag
     3481 cacaggcatc tgcagccctc tttgactcta tgcacagcaa ccagacctct gatagcccgt
     3541 tttctccacc tcgcactctt cattcaccta ccctgcaact ccggcagcgc tctgaaaagc
     3601 ccccttggta cagcagtggc ccttccagca ctgtgtccag cgctggtcct tcctccccta
     3661 ctgcagtgga tggtaactgc cattttggct tcagtgatca cccctcccta aattcacatg
     3721 tgactgaaga acatcaaggc cttgggctgc tccaggagac cattgggaat ggagcacaag
     3781 agctccccat agaaggggaa caagagcctt ttgaacgaaa ccagtcccca caggaaccac
     3841 ctgtggaaac cagccagcca tgccagaagg ttgctgagga ggtcagccaa ccatgccaga
     3901 acatccctga agaggaggtc agccagccat gccaggaagt ccctgacatc agccagccat
     3961 gccaggagaa ccatgatgat gttaaccaga cttgccagga ggtccctcag atcagccaac
     4021 catgccagaa tgccagccaa ctgtaccaga aagtctctga ggaagcttgc aagctttgcc
     4081 aggagaactc tgaggaggtc aaccagccac gccagggggt ccctgtggag gttggcaggc
     4141 aggtccctgg gttccctgta ggggttggtg gcctggccca ggaaattctt gtggaagtcg
     4201 ggaaaccagc ccaagggatc cctgaggagc tcagccagcc atgccaggaa ttctctgggg
     4261 acattggcag gctggcccaa gaggcttctg caatcatttt gttgtctcag gacatcccag
     4321 aggttgataa accatcccaa gagttccctg gggagggtga tctgcatgtc caggaggtcc
     4381 cagaggaggt gaatcagcag cagtcctatg tgttccctga gttgattgac cagctgtctg
     4441 gagaggatgt tcctgaagtc cagtatccat ctagcaatgt aaaccctcag agccagtctc
     4501 tagcctgtga ccagaactca ccccttccac cagcaacatg tgattaatca ttttctcatt
     4561 tgtggtgtca cactatacca gacatttgag ctagcaaatt tttctgttgg ctaactcacc
     4621 cgccagcatt aaggccttgg atctcaccag aggtgtctga ggaagcagtc ctcttggcat
     4681 gaagcatacc tgtgccagag ctgggcttgg ggaggagcca acttcaggtt aaagcagctg
     4741 ttgacttctc acccagccat tagacttgaa aacgatttcc ttcaagaggt aaatgggtct
     4801 atcattacct aactttctct gatcatccca ggaaatccca gattggtaaa ggaactgcca
     4861 cttaactgct gaagacaaca cctggggata gcaagtgcaa aaggggactc caaggtctct
     4921 acttttccag aaaatattca caacttttca aggtaccctt agaccatatg cgcattcagg
     4981 ggactcttgt ctttgttagt atcctcaggt gggcccagga tggctgtctg aaatgtctgg
     5041 gaaaaaagag ttcctttccc aaacaaatat ccgtcatggc cacaaatttt tagattgggc
     5101 ttatggatgt ttccgtatca tccccaggtg ccctctctgc cctagtcctg ttcctctggg
     5161 caatagctct agggaaaaat aggtattaga ttgctgtgaa aatttcagag taactactta
     5221 aaatgctctg agggttcttg gccaatctgt aaagctgggc ctccttttgt tgtgggacta
     5281 tatggcttag gagatattgt agtagagaaa aatcaggttc tattttaagc aatcagcaga
     5341 gatcagtatt gtacagacat gagcaaagat tatatatata tttctgtagt cgagtcaggg
     5401 acagactggc caaagaccaa atactccagg gtccccatag gatttgtcct catatcattg
     5461 tgtctttaag gccaggtgtg attatgaagc ttttcccaaa gatctgggga tggggatggg
     5521 gatgggggtg agtaggaggg gtaatgtggt cattggagtt gggggccgga acattatgag
     5581 tgctcaataa atataaaata atgagaat
//
LOCUS       XM_032619426            5506 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X11, mRNA.
ACCESSION   XM_032619426
VERSION     XM_032619426.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5506
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5506
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116747355"
     CDS             210..4445
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X8"
                     /protein_id="XP_032475317.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGFEGCSMVPTIYPLE
                     TLHNALSLRQVSEFLSRVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTL
                     QLRQRSEKPPWYSSGPSSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGL
                     LQETIGNGAQELPIEGEQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVS
                     QPCQEVPDISQPCQENHDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEE
                     VNQPRQGVPVEVGRQVPGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGR
                     LAQEASAIILLSQDIPEVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGE
                     DVPEVQYPSSNVNPQSQSLACDQNSPLPPATCD"
     misc_feature    372..641
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <639..1220
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1377..2927
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    3774..>4055
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 ggcaccgaag agaagtcgtg ctttgattgg gccgctgtca ggtgtcgctg ccggcaggtt
       61 cgggtgcgcg agcgcaggga ggcgggaatc aacagtagcc ttccatgagg aactgccttt
      121 cccatttgct gctggagtta acggtttttc ctgctggcag aatcagggac atgccagcac
      181 tagcgggatg agtgggtgct ccggcgggga tgtggtcatt gccggccagt gagggcgaga
      241 gcgccacagc ccacttcttc cttggagctg gagatgaggg gctgggcacc cgtggaatag
      301 gcatgaggac agaagagagt gacagcgagc tccttgagga tgaggaggat gaagtgcctc
      361 ctgaacctca gatcattgtt ggcatctgtg ccatgaccaa gaaatccaag tccaagccaa
      421 tgacccaaat cctagagcga ctctgcagat ttgactacct gactgttatc atcctgggag
      481 aagatgtgat ccttaatgaa cctgtggaaa actggccatc ctgccattgc ctcatctctt
      541 tccactccaa aggctttcct ctggacaaag ctgttgctta ctccaagctt cgaaaccctt
      601 ttcttatcaa tgacctggct atgcagtatt acatccagga taggagggag gtgtaccgga
      661 tcctgcagga ggagggtatt gatctgcctc gatatgctgt gctcaaccgt gaccctgccc
      721 ggcctgagga gtgcaacctg attgagggtg aagatcaggt ggaggtaaat ggagccgtct
      781 ttcccaagcc ctttgtggag aagccagtga gtgcagagga ccacaatgtt tacatctact
      841 accccagctc agccggagga ggaagccagc gcctcttccg taagattggc agccggagca
      901 gcgtttactc tcctgagagc agcgtccgga agacagggtc atacatctat gaggagttta
      961 tgccaacaga tggcacagat gtcaaggtgt atacagtggg gccagactat gcccatgctg
     1021 aagccagaaa atctccagct ttggatggga aggtcgaaag agacagtgag gggaaagaaa
     1081 ttcgatatcc agtcatgctg actgccatgg aaaagctggt ggccaggaaa gtctgcgtag
     1141 cttttaagca aacggtctgt ggttttgacc tccttcgtgc caatggtcac tcctttgtgt
     1201 gtgatgtcaa cggcttcagt ttcgtcaaga attcgatgaa atactacgat gactgtgcca
     1261 agattctggg gaacaccata atgcgggagc ttgccccgca gttccagatc ccatggtcca
     1321 tccccacaga agctgaggac attcccattg tccctaccac atctggcacc atgatggaac
     1381 ttcgttgcgt cattgcaatt atccgtcacg gggatcgtac ccccaagcag aagatgaaga
     1441 tggaggtgac acacccaagg ttttttagtc tatttgaaaa acatggtggc tacaagacag
     1501 ggaaattaaa actgaagcgg cccgagcagc tacaggaggt gctggacatc acaaggctgc
     1561 tattggctga actggaaaaa gaaccaggtg gtgagattga ggagaagact gggaaactgg
     1621 agcagctgaa atctgtgctg gagatgtatg gtcacttctc aggcatcaac cggaaggtgc
     1681 agttgactta ctaccctcat ggagtaaaag cttctaatga ggggcaagat ccacaggggg
     1741 aggctctggc cccatcccta ttgctggtac tgaagtgggg tggagaactg acccctgctg
     1801 gccgtgttca ggctgaggag ctggggcgag ctttccgctg catgtaccct ggaggacagg
     1861 gtgactatgc tggcttcccc gggtgtgggc tgcttcgcct ccatagcacc ttccgccatg
     1921 atctcaagat ttatgcctct gatgagggcc gtgtccagat gactgctgca gcctttgcca
     1981 agggccttct agctctagaa ggggagctga cacccatttt ggtacaaatg gtgaagagtg
     2041 ccaacatgaa cgggctcttg gacagtgatg gcgattccct gagcagctgc cagcaccggg
     2101 tgaaggctcg gctgcaccac attttgcagc aggatgcacc ctttgcccct gaggattatg
     2161 atcagctggc tcccactgga agcacttccc tactcaactc catggctata atccagaatc
     2221 ctgtgaaggt ctgtgatcag gtatttgccc tgattgaaaa cctcactcac cagatccaga
     2281 aacggatgca ggaccccaag tctgtagacc tgcagcttta ccacagcgag acactagagc
     2341 taatgctaca gcgttggagc aagctggagc gtgactttcg acagaagagt gggcgctatg
     2401 atatcagtaa gattcctgac atctatgact gtgtcaagta tgatgtgcag cacaatggga
     2461 gtctgggact tcaaggaaca gcagagttgc tccgtctctc taaggcactg gctgatgtgg
     2521 tcattcccca ggagtacggg atcagtcggg aggagaaact ggaaattgct gtgggcttct
     2581 gtcttccact gttgcggaag atactacttg acctgcagag aacccacgag gatgagtctg
     2641 tcaacaagct gcaccccctg tactcccgag gagtgctctc cccaggccgc catgttcgaa
     2701 cacgtctcta ctttaccagt gaaagccacg tccactccct actcagtgtc ttccgttatg
     2761 ggggacttct tgatgagacc aaggatgcac aatggcagcg agctttggct tatcttagtg
     2821 ccatctcaga gctcaactac atgacccaga ttgtcatcat gctttatgaa gacaacacac
     2881 gggatccctt atcagaggag cggttccatg tggagctgca cttcagccct ggagtgaaag
     2941 gtgtcgagga agaaggcagt gccccaactg gctgtggatt ccgtccagcc tcttctgaga
     3001 atgaggagat gaaaacagac caaggcagca tggaggacct gtgcccgggg aaggcatcag
     3061 atgagccaga cggagcattg cagacctcac cccagccctc tgagggccct ggcctcccaa
     3121 agagatcacc cctcattcgt aaccgcaaag ccggctccat ggaggtgctt tctgagactt
     3181 cgtcctcgag gcctggtggc taccgactct tttcatcttc acggccacca acggagatga
     3241 agcagagcgg cctaggattt gaagggtgct ccatggtgcc taccatttac cccctggaaa
     3301 cactgcataa tgccctttcg ctgcgtcaag tgagtgaatt cttgagtaga gtctgccagc
     3361 gccacactga tgcccaagca caggcatctg cagccctctt tgactctatg cacagcaacc
     3421 agacctctga tagcccgttt tctccacctc gcactcttca ttcacctacc ctgcaactcc
     3481 ggcagcgctc tgaaaagccc ccttggtaca gcagtggccc ttccagcact gtgtccagcg
     3541 ctggtccttc ctcccctact gcagtggatg gtaactgcca ttttggcttc agtgatcacc
     3601 cctccctaaa ttcacatgtg actgaagaac atcaaggcct tgggctgctc caggagacca
     3661 ttgggaatgg agcacaagag ctccccatag aaggggaaca agagcctttt gaacgaaacc
     3721 agtccccaca ggaaccacct gtggaaacca gccagccatg ccagaaggtt gctgaggagg
     3781 tcagccaacc atgccagaac atccctgaag aggaggtcag ccagccatgc caggaagtcc
     3841 ctgacatcag ccagccatgc caggagaacc atgatgatgt taaccagact tgccaggagg
     3901 tccctcagat cagccaacca tgccagaatg ccagccaact gtaccagaaa gtctctgagg
     3961 aagcttgcaa gctttgccag gagaactctg aggaggtcaa ccagccacgc cagggggtcc
     4021 ctgtggaggt tggcaggcag gtccctgggt tccctgtagg ggttggtggc ctggcccagg
     4081 aaattcttgt ggaagtcggg aaaccagccc aagggatccc tgaggagctc agccagccat
     4141 gccaggaatt ctctggggac attggcaggc tggcccaaga ggcttctgca atcattttgt
     4201 tgtctcagga catcccagag gttgataaac catcccaaga gttccctggg gagggtgatc
     4261 tgcatgtcca ggaggtccca gaggaggtga atcagcagca gtcctatgtg ttccctgagt
     4321 tgattgacca gctgtctgga gaggatgttc ctgaagtcca gtatccatct agcaatgtaa
     4381 accctcagag ccagtctcta gcctgtgacc agaactcacc ccttccacca gcaacatgtg
     4441 attaatcatt ttctcatttg tggtgtcaca ctataccaga catttgagct agcaaatttt
     4501 tctgttggct aactcacccg ccagcattaa ggccttggat ctcaccagag gtgtctgagg
     4561 aagcagtcct cttggcatga agcatacctg tgccagagct gggcttgggg aggagccaac
     4621 ttcaggttaa agcagctgtt gacttctcac ccagccatta gacttgaaaa cgatttcctt
     4681 caagaggtaa atgggtctat cattacctaa ctttctctga tcatcccagg aaatcccaga
     4741 ttggtaaagg aactgccact taactgctga agacaacacc tggggatagc aagtgcaaaa
     4801 ggggactcca aggtctctac ttttccagaa aatattcaca acttttcaag gtacccttag
     4861 accatatgcg cattcagggg actcttgtct ttgttagtat cctcaggtgg gcccaggatg
     4921 gctgtctgaa atgtctggga aaaaagagtt cctttcccaa acaaatatcc gtcatggcca
     4981 caaattttta gattgggctt atggatgttt ccgtatcatc cccaggtgcc ctctctgccc
     5041 tagtcctgtt cctctgggca atagctctag ggaaaaatag gtattagatt gctgtgaaaa
     5101 tttcagagta actacttaaa atgctctgag ggttcttggc caatctgtaa agctgggcct
     5161 ccttttgttg tgggactata tggcttagga gatattgtag tagagaaaaa tcaggttcta
     5221 ttttaagcaa tcagcagaga tcagtattgt acagacatga gcaaagatta tatatatatt
     5281 tctgtagtcg agtcagggac agactggcca aagaccaaat actccagggt ccccatagga
     5341 tttgtcctca tatcattgtg tctttaaggc caggtgtgat tatgaagctt ttcccaaaga
     5401 tctggggatg gggatgggga tgggggtgag taggaggggt aatgtggtca ttggagttgg
     5461 gggccggaac attatgagtg ctcaataaat ataaaataat gagaat
//
LOCUS       XM_032619436            5407 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus diphosphoinositol pentakisphosphate
            kinase 1 (PPIP5K1), transcript variant X12, mRNA.
ACCESSION   XM_032619436
VERSION     XM_032619436.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5407
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5407
                     /gene="PPIP5K1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 long SRA reads, 6
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116747355"
     CDS             111..4346
                     /gene="PPIP5K1"
                     /codon_start=1
                     /product="inositol hexakisphosphate and
                     diphosphoinositol-pentakisphosphate kinase 1 isoform X8"
                     /protein_id="XP_032475327.1"
                     /db_xref="GeneID:116747355"
                     /translation="MWSLPASEGESATAHFFLGAGDEGLGTRGIGMRTEESDSELLED
                     EEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENW
                     PSCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLP
                     RYAVLNRDPARPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGG
                     SQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP
                     ALDGKVERDSEGKEIRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVN
                     GFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELR
                     CVIAIIRHGDRTPKQKMKMEVTHPRFFSLFEKHGGYKTGKLKLKRPEQLQEVLDITRL
                     LLAELEKEPGGEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASNEGQDP
                     QGEALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHS
                     TFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDGDSL
                     SSCQHRVKARLHHILQQDAPFAPEDYDQLAPTGSTSLLNSMAIIQNPVKVCDQVFALI
                     ENLTHQIQKRMQDPKSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYD
                     CVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKLEIAVGFCLPLLRKI
                     LLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDE
                     TKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEE
                     EGSAPTGCGFRPASSENEEMKTDQGSMEDLCPGKASDEPDGALQTSPQPSEGPGLPKR
                     SPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGFEGCSMVPTIYPLE
                     TLHNALSLRQVSEFLSRVCQRHTDAQAQASAALFDSMHSNQTSDSPFSPPRTLHSPTL
                     QLRQRSEKPPWYSSGPSSTVSSAGPSSPTAVDGNCHFGFSDHPSLNSHVTEEHQGLGL
                     LQETIGNGAQELPIEGEQEPFERNQSPQEPPVETSQPCQKVAEEVSQPCQNIPEEEVS
                     QPCQEVPDISQPCQENHDDVNQTCQEVPQISQPCQNASQLYQKVSEEACKLCQENSEE
                     VNQPRQGVPVEVGRQVPGFPVGVGGLAQEILVEVGKPAQGIPEELSQPCQEFSGDIGR
                     LAQEASAIILLSQDIPEVDKPSQEFPGEGDLHVQEVPEEVNQQQSYVFPELIDQLSGE
                     DVPEVQYPSSNVNPQSQSLACDQNSPLPPATCD"
     misc_feature    273..542
                     /gene="PPIP5K1"
                     /note="Diphosphoinositol pentakisphosphate kinase 2
                     N-terminal domain; Region: PPIP5K2_N; pfam18086"
                     /db_xref="CDD:465643"
     misc_feature    <540..1121
                     /gene="PPIP5K1"
                     /note="Glutathione synthase, LysX or RimK-type ligase,
                     ATP-grasp superfamily [Amino acid transport and
                     metabolism, Coenzyme transport and metabolism,
                     Translation, ribosomal structure and biogenesis, Secondary
                     metabolites biosynthesis, transport and catabolism];
                     Region: LysX; COG0189"
                     /db_xref="CDD:439959"
     misc_feature    1278..2828
                     /gene="PPIP5K1"
                     /note="Histidine phosphatase superfamily (branch 2);
                     Region: His_Phos_2; pfam00328"
                     /db_xref="CDD:395259"
     misc_feature    3675..>3956
                     /gene="PPIP5K1"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
ORIGIN      
        1 accgaagaga agtcgtgctt tgattgggcc gctgtcaggt gtcgctgccg gcaggttcgg
       61 gtgcgcgagc gcagggaggc ggagcgggat gagtgggtgc tccggcgggg atgtggtcat
      121 tgccggccag tgagggcgag agcgccacag cccacttctt ccttggagct ggagatgagg
      181 ggctgggcac ccgtggaata ggcatgagga cagaagagag tgacagcgag ctccttgagg
      241 atgaggagga tgaagtgcct cctgaacctc agatcattgt tggcatctgt gccatgacca
      301 agaaatccaa gtccaagcca atgacccaaa tcctagagcg actctgcaga tttgactacc
      361 tgactgttat catcctggga gaagatgtga tccttaatga acctgtggaa aactggccat
      421 cctgccattg cctcatctct ttccactcca aaggctttcc tctggacaaa gctgttgctt
      481 actccaagct tcgaaaccct tttcttatca atgacctggc tatgcagtat tacatccagg
      541 ataggaggga ggtgtaccgg atcctgcagg aggagggtat tgatctgcct cgatatgctg
      601 tgctcaaccg tgaccctgcc cggcctgagg agtgcaacct gattgagggt gaagatcagg
      661 tggaggtaaa tggagccgtc tttcccaagc cctttgtgga gaagccagtg agtgcagagg
      721 accacaatgt ttacatctac taccccagct cagccggagg aggaagccag cgcctcttcc
      781 gtaagattgg cagccggagc agcgtttact ctcctgagag cagcgtccgg aagacagggt
      841 catacatcta tgaggagttt atgccaacag atggcacaga tgtcaaggtg tatacagtgg
      901 ggccagacta tgcccatgct gaagccagaa aatctccagc tttggatggg aaggtcgaaa
      961 gagacagtga ggggaaagaa attcgatatc cagtcatgct gactgccatg gaaaagctgg
     1021 tggccaggaa agtctgcgta gcttttaagc aaacggtctg tggttttgac ctccttcgtg
     1081 ccaatggtca ctcctttgtg tgtgatgtca acggcttcag tttcgtcaag aattcgatga
     1141 aatactacga tgactgtgcc aagattctgg ggaacaccat aatgcgggag cttgccccgc
     1201 agttccagat cccatggtcc atccccacag aagctgagga cattcccatt gtccctacca
     1261 catctggcac catgatggaa cttcgttgcg tcattgcaat tatccgtcac ggggatcgta
     1321 cccccaagca gaagatgaag atggaggtga cacacccaag gttttttagt ctatttgaaa
     1381 aacatggtgg ctacaagaca gggaaattaa aactgaagcg gcccgagcag ctacaggagg
     1441 tgctggacat cacaaggctg ctattggctg aactggaaaa agaaccaggt ggtgagattg
     1501 aggagaagac tgggaaactg gagcagctga aatctgtgct ggagatgtat ggtcacttct
     1561 caggcatcaa ccggaaggtg cagttgactt actaccctca tggagtaaaa gcttctaatg
     1621 aggggcaaga tccacagggg gaggctctgg ccccatccct attgctggta ctgaagtggg
     1681 gtggagaact gacccctgct ggccgtgttc aggctgagga gctggggcga gctttccgct
     1741 gcatgtaccc tggaggacag ggtgactatg ctggcttccc cgggtgtggg ctgcttcgcc
     1801 tccatagcac cttccgccat gatctcaaga tttatgcctc tgatgagggc cgtgtccaga
     1861 tgactgctgc agcctttgcc aagggccttc tagctctaga aggggagctg acacccattt
     1921 tggtacaaat ggtgaagagt gccaacatga acgggctctt ggacagtgat ggcgattccc
     1981 tgagcagctg ccagcaccgg gtgaaggctc ggctgcacca cattttgcag caggatgcac
     2041 cctttgcccc tgaggattat gatcagctgg ctcccactgg aagcacttcc ctactcaact
     2101 ccatggctat aatccagaat cctgtgaagg tctgtgatca ggtatttgcc ctgattgaaa
     2161 acctcactca ccagatccag aaacggatgc aggaccccaa gtctgtagac ctgcagcttt
     2221 accacagcga gacactagag ctaatgctac agcgttggag caagctggag cgtgactttc
     2281 gacagaagag tgggcgctat gatatcagta agattcctga catctatgac tgtgtcaagt
     2341 atgatgtgca gcacaatggg agtctgggac ttcaaggaac agcagagttg ctccgtctct
     2401 ctaaggcact ggctgatgtg gtcattcccc aggagtacgg gatcagtcgg gaggagaaac
     2461 tggaaattgc tgtgggcttc tgtcttccac tgttgcggaa gatactactt gacctgcaga
     2521 gaacccacga ggatgagtct gtcaacaagc tgcaccccct gtactcccga ggagtgctct
     2581 ccccaggccg ccatgttcga acacgtctct actttaccag tgaaagccac gtccactccc
     2641 tactcagtgt cttccgttat gggggacttc ttgatgagac caaggatgca caatggcagc
     2701 gagctttggc ttatcttagt gccatctcag agctcaacta catgacccag attgtcatca
     2761 tgctttatga agacaacaca cgggatccct tatcagagga gcggttccat gtggagctgc
     2821 acttcagccc tggagtgaaa ggtgtcgagg aagaaggcag tgccccaact ggctgtggat
     2881 tccgtccagc ctcttctgag aatgaggaga tgaaaacaga ccaaggcagc atggaggacc
     2941 tgtgcccggg gaaggcatca gatgagccag acggagcatt gcagacctca ccccagccct
     3001 ctgagggccc tggcctccca aagagatcac ccctcattcg taaccgcaaa gccggctcca
     3061 tggaggtgct ttctgagact tcgtcctcga ggcctggtgg ctaccgactc ttttcatctt
     3121 cacggccacc aacggagatg aagcagagcg gcctaggatt tgaagggtgc tccatggtgc
     3181 ctaccattta ccccctggaa acactgcata atgccctttc gctgcgtcaa gtgagtgaat
     3241 tcttgagtag agtctgccag cgccacactg atgcccaagc acaggcatct gcagccctct
     3301 ttgactctat gcacagcaac cagacctctg atagcccgtt ttctccacct cgcactcttc
     3361 attcacctac cctgcaactc cggcagcgct ctgaaaagcc cccttggtac agcagtggcc
     3421 cttccagcac tgtgtccagc gctggtcctt cctcccctac tgcagtggat ggtaactgcc
     3481 attttggctt cagtgatcac ccctccctaa attcacatgt gactgaagaa catcaaggcc
     3541 ttgggctgct ccaggagacc attgggaatg gagcacaaga gctccccata gaaggggaac
     3601 aagagccttt tgaacgaaac cagtccccac aggaaccacc tgtggaaacc agccagccat
     3661 gccagaaggt tgctgaggag gtcagccaac catgccagaa catccctgaa gaggaggtca
     3721 gccagccatg ccaggaagtc cctgacatca gccagccatg ccaggagaac catgatgatg
     3781 ttaaccagac ttgccaggag gtccctcaga tcagccaacc atgccagaat gccagccaac
     3841 tgtaccagaa agtctctgag gaagcttgca agctttgcca ggagaactct gaggaggtca
     3901 accagccacg ccagggggtc cctgtggagg ttggcaggca ggtccctggg ttccctgtag
     3961 gggttggtgg cctggcccag gaaattcttg tggaagtcgg gaaaccagcc caagggatcc
     4021 ctgaggagct cagccagcca tgccaggaat tctctgggga cattggcagg ctggcccaag
     4081 aggcttctgc aatcattttg ttgtctcagg acatcccaga ggttgataaa ccatcccaag
     4141 agttccctgg ggagggtgat ctgcatgtcc aggaggtccc agaggaggtg aatcagcagc
     4201 agtcctatgt gttccctgag ttgattgacc agctgtctgg agaggatgtt cctgaagtcc
     4261 agtatccatc tagcaatgta aaccctcaga gccagtctct agcctgtgac cagaactcac
     4321 cccttccacc agcaacatgt gattaatcat tttctcattt gtggtgtcac actataccag
     4381 acatttgagc tagcaaattt ttctgttggc taactcaccc gccagcatta aggccttgga
     4441 tctcaccaga ggtgtctgag gaagcagtcc tcttggcatg aagcatacct gtgccagagc
     4501 tgggcttggg gaggagccaa cttcaggtta aagcagctgt tgacttctca cccagccatt
     4561 agacttgaaa acgatttcct tcaagaggta aatgggtcta tcattaccta actttctctg
     4621 atcatcccag gaaatcccag attggtaaag gaactgccac ttaactgctg aagacaacac
     4681 ctggggatag caagtgcaaa aggggactcc aaggtctcta cttttccaga aaatattcac
     4741 aacttttcaa ggtaccctta gaccatatgc gcattcaggg gactcttgtc tttgttagta
     4801 tcctcaggtg ggcccaggat ggctgtctga aatgtctggg aaaaaagagt tcctttccca
     4861 aacaaatatc cgtcatggcc acaaattttt agattgggct tatggatgtt tccgtatcat
     4921 ccccaggtgc cctctctgcc ctagtcctgt tcctctgggc aatagctcta gggaaaaata
     4981 ggtattagat tgctgtgaaa atttcagagt aactacttaa aatgctctga gggttcttgg
     5041 ccaatctgta aagctgggcc tccttttgtt gtgggactat atggcttagg agatattgta
     5101 gtagagaaaa atcaggttct attttaagca atcagcagag atcagtattg tacagacatg
     5161 agcaaagatt atatatatat ttctgtagtc gagtcaggga cagactggcc aaagaccaaa
     5221 tactccaggg tccccatagg atttgtcctc atatcattgt gtctttaagg ccaggtgtga
     5281 ttatgaagct tttcccaaag atctggggat ggggatgggg atgggggtga gtaggagggg
     5341 taatgtggtc attggagttg ggggccggaa cattatgagt gctcaataaa tataaaataa
     5401 tgagaat
//
LOCUS       XR_004348027            3315 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747391
            (LOC116747391), ncRNA.
ACCESSION   XR_004348027
VERSION     XR_004348027.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3315
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3315
                     /gene="LOC116747391"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 90% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747391"
     ncRNA           1..3315
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747391"
                     /product="uncharacterized LOC116747391"
                     /db_xref="GeneID:116747391"
ORIGIN      
        1 ccacagatat tgttgtggaa taataactcc taaaatatta ttttctcaaa ttcctgacca
       61 tttctcccac acagcagaat gggaagctgc atcctgtgaa ctttgatctc agtgccaaac
      121 ctcaaagtat gactagttct tgcagcagta aatccaggaa accctgcttc tactctggat
      181 ttcatgggct catcagcctt tggtacaagg tttctgctct gctctggaca tctgttgact
      241 gagccaaggg aggaggcaga aaccctgaaa cctggagcct gtgcagcctg agggaaactg
      301 ctaagcaagg atctgggaag gtgagtggga ggttcaaggg tctctgcaaa gggaagcaag
      361 gaggccaggg catacagaaa ggggaacaaa caaaaaaaag gaatttttac ttgggagatg
      421 actgatcact caagaggtac cacgttccct tactgcatgt cagtggctgt ccataaccca
      481 ccctcttctc aggtagaaat tatgttctcc aggcttcctc caccatcata ccatctgtct
      541 gcgaaatgta ctgggtatgt ggggatagtt aaggagcttt acaactttcc tctcaggagt
      601 ccctccctcc ctgacccaaa cttcccacaa ggccagttct gccagggaga gtggacttct
      661 gctcttctgt gaccagccct cacccaaagg actgagacaa atgacactgg tcctaacctt
      721 tgacctctga ggagaagtga gctagatgcc gggtaatgaa gagtctcaat tgttggttca
      781 agtcaatgga tgataaatca atgttccagg agagaatccc tgtgagagaa aaagaaacaa
      841 agagggacct agataaggtc agagggattg gacttgtggg agcatttcca agctcacaga
      901 aggggtaagg agagggaggg gataaggacg gctgccatga tcagcctcac tgatgtcttt
      961 aagaaatgtg gctagtgcct atgtctagct cccatcctgt gcctttcttg ggctttgctg
     1021 agccagaggg agaagtgcag agtttaggct aaatttggtc attaatgagt ttgtatgtag
     1081 gaattttctt gcacagttgc ccaattgtga cagaagtgac acccaagggc ccgttcccag
     1141 atactaggga ctgccttccc catacaggta agtaggattc tacactctcc ttctgtggcc
     1201 ccctccttgc ctccactccc ccgcggcatg cttccacccg caggtggctc cgcagcactg
     1261 cgccacaggc agtggaggac tgaggagctt gtggccacga aggtcactct ctcaggttgg
     1321 ccgctggcac tgggatattt gagatttgtc tgcggcgttc aaaacgcacc ctgttcctgt
     1381 tcagacgccc taaagaagaa actaaggtag ggacatggac tctccacggg atggtgacga
     1441 ctttcaggac ctctggccca agacactgcg ggagggaggg gtgtaaccag agggcccccc
     1501 acccaggcac tgcccagctc cccccgcccc cacgctcccg cctgcctcag ggagactgcg
     1561 aacgccatgg ggtgtgcggg aaggatggag atgtgagatg ttggcagctt gggaggatat
     1621 gaacgcgtga cactgaagat gcaggtgaca ggggctgatg attcagatta acagggtgcg
     1681 cagatctcag gaagtgcacg ctagggatgg aggatgcaca tggcagagaa gcacgggatg
     1741 gaggatgtcc cgagcgcagc caggacagca agctcacctt gctcaaggtg ggcccgaacg
     1801 gccctcagct gattctctgt accgatatcg ccgatcacga tgagcaaaga gtgtttctgc
     1861 aggtcccagc gtgccgccgc caccgcggct ccggcctcgc acagcggctc cgcggggttc
     1921 tgagccagca gagagccggg gcttcggagc cctagccccg gacttgtctc catggcaacg
     1981 tcgaaaggcc gccggggccc agcctcggtc tccatggaaa ctccgttgga gtgctaggcc
     2041 ggcagcatcc gctgcaggga gagtgcgcgc ggttcttaaa ggccggcggc aggagccgct
     2101 cattggctgc tgcctgtcag ggggcggacc gttggcgccg caggggccgg gctggggccg
     2161 cgtgctctgg ctctgcggtt tcgctgtgcc tggggggcgg gggcgtggct gtcccccttc
     2221 gcccccagtc gttttccaga gggagctccc actctgactt gagtagggat gggggctctg
     2281 agggccgggt ggaggggcga gtctattgcc tcggcgccag aagaagcttc tagttaggat
     2341 atttcccgga taagtgtgct gtctggcaat tccgcagcct cgcccgaatt gaggggagcc
     2401 atcttgtccc tctctgactc tgagtttgtt tgggtgcatc gttctttgtc ggtgtgtttg
     2461 tattatcatt gtctggagct tttttttttt tccttctgtc actgcctgcc agggtcctac
     2521 attgcatcct tggtgtttct gtcgtcattg cctcaggccc tgggtgtgct ctggaaggct
     2581 gtgcagtatt ggagggacag aatgaccttc cggccctgag tccctggctg caccaggttt
     2641 cagttgtggc acgtgggatc tcagttgtgg catgcatgcg ggatctaatt ccctgaccag
     2701 ggattgaacc caggccccct gcaccgggag cgcagagtct tacccactgg accaccaggg
     2761 aagtcctcat cagttctttc ttgaagatcc ttcatcatac gtcctaactt ccatttctaa
     2821 tgatacctcc tggatgcgat cagaaaaatc cacaaagttg gaaattttac agaacaaacg
     2881 atgtgatttc atcaacaaat aaataaattg caggaaataa aaaagaggaa gacttacaga
     2941 ttaaaagagg cctaagggga cacgggttcg agccctggtc tgggaagatc ccacatgccg
     3001 cggagcaact aggcccgtga gccacaacta ctgagcctgc gcgtctggag cctgtgctcc
     3061 gcaacaagag aggccgcgac agtgagaggc ccgcgcaccg cgatgaagag tggcccccgc
     3121 tcgccgcaac tagagaaagc cctcgcacag aaacgaagac ccaacacagc cataaataaa
     3181 taaataaata aataataata aaaaaaaaaa gaatatgaaa aagaatgtat gtatatgtat
     3241 agctgaatca cttcgctgta caatagaaat taacaccaca ttgtaaatca actatacttc
     3301 aataaaataa ttttt
//
LOCUS       XM_032619466            4646 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apoptotic chromatin condensation inducer
            1 (ACIN1), transcript variant X1, mRNA.
ACCESSION   XM_032619466
VERSION     XM_032619466.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4646
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4646
                     /gene="ACIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 12 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116747393"
     CDS             16..4029
                     /gene="ACIN1"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus isoform X1"
                     /protein_id="XP_032475357.1"
                     /db_xref="GeneID:116747393"
                     /translation="MWRRKHPRISGGTRGVLSGNRGVDYGSGRGQLGTFEGRWRKLPK
                     MPEAVGTDPSTSRKMAELEEVTLDGKPLQALRVTDLKAALEQRGLAKSGQKSALVKRL
                     KGALMLENLQKHSTPHAAFQPNSQIGEEMSQNSFIKQYLEKQQELLRQRLEREAREAA
                     ELEEASAESEDEMIHPEGVASLLPPDFQSSLERPELELSRHSPRKSASISEEKGESDD
                     EKPRKGERRSSRVRQARAAKLSECSQAAEEEEDQETPSRNLRLRADRNLKTEEEEEED
                     EEEEEEEEEEEDDDEGQKSRDAPVLKQFKEEEGEEKPSVKVEEVMDERSQTIRSQEQE
                     GLERGGRVTRSQEEARRSHLARHQQEKEMKTASPLEEEEREIKPSKSLEEKSKSPSPP
                     RLTEDLEKAPVVLQPEQTASEEETPPPLLTKEASSPPPNTQLQSEEEIEPMEGPAPPV
                     LIQLSPPNTDAEARELLLSQHTVQLVGGLSPLSSPADTKVESPVEKVPEESVLPLVQK
                     STQAESSTQKGLETESEKSAQPLPLKIEEFTLAKGITEESLEQKEGRRASHTLVPSHR
                     SKRSADSSSSRSSSSSSSSSRSRSRSPDSSGSQSHSPPRSKQRNISQAGTHSNPRGRP
                     KMGSRSTSESRSRSRSRSRSASSNSRRSLSPGVSRDSSTSYTETKDPSSGQEVATPPL
                     PQLQVLEPKERTSTSTSIRVRRMSQPEPAEKHVTQRLQPERGSPKKCEAEEAEPPAAT
                     QPQTSETPTSHLPESERIHHTVEEKEEVTMDTSENRPENEVPEPPMPIADQVSNDDRP
                     EGSAEDEEKKESSLPKSFKRKISVVSATKGVPAGNSDTEGGQPSRKRRWGASTATTQK
                     KPSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHDKGLKIC
                     RTVTQVVPSEGQENGQREEEEEEKEPEAEAPVPPQVSVEVALPPPVEHEVKKVTLGDT
                     LTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKELLGR
                     TGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYAEQDEL
                     DYHRGLLVDRPSETKTEEQGVPRPLHPPPPPPAQPPQHPRAEQREQERAVREQWAERE
                     REMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSEKKEKAQEEPPA
                     KLLDDLFRKTKAAPCIYWLPLTDSQIVQKEAERAERAKEREKRRKEQEEEEQKEREKE
                     AERERTRQLEREKRREHSRERDRERERDRERDRGDRDRERDRDRERGRERDRRDTKRH
                     SRSRSRSTPVRDRGGRR"
     misc_feature    229..333
                     /gene="ACIN1"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    <643..1347
                     /gene="ACIN1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1126..1617
                     /gene="ACIN1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    3034..3294
                     /gene="ACIN1"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <3619..3711
                     /gene="ACIN1"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:465085"
ORIGIN      
        1 aaccaattgg tgccgatgtg gagacggaaa cacccgagaa tttccggagg aacccgggga
       61 gttctgagtg gtaatcgagg ggttgactat ggaagtgggc ggggccaact cggtacgttc
      121 gaagggcgtt ggcggaaatt accgaagatg cccgaagccg tcggaacgga cccgagtacc
      181 tcacgcaaga tggcggagct ggaggaggtg actctggacg ggaagcctct tcaggcgctg
      241 cgggtgaccg acctgaaggc cgcactggag cagcgaggcc tagccaagag cgggcagaag
      301 agtgccctgg tcaagcggct caaaggggct ctaatgctag aaaatttaca gaaacactca
      361 acaccccatg ctgcattcca gccaaattcc cagattggcg aggaaatgag ccagaacagt
      421 ttcataaagc agtatctgga aaagcagcag gagctgctta ggcagcgtct ggaacgtgaa
      481 gctcgagaag ctgcagaact tgaagaagct tcagctgagt cggaggacga gatgatccat
      541 cccgagggag tggcttccct gctgcctcct gactttcaga gcagcctgga gagaccagag
      601 ctggagctca gcagacattc acccagaaaa agcgcctcta tttccgaaga gaaaggtgaa
      661 tctgatgatg agaaaccaag gaaaggagaa agacgatcat ccagagtcag acaggcaaga
      721 gcagctaaac tctctgagtg cagccaggct gctgaggagg aagaggatca agaaacacct
      781 tccagaaatc tgaggctcag agcagatcga aatttgaaaa ctgaagagga agaagaagag
      841 gatgaggaag aggaagaaga ggaggaagag gaggaagacg atgatgaggg acaaaaatct
      901 agggatgcac cagtcctgaa gcagtttaag gaagaagagg gggaagagaa gcccagtgta
      961 aaagtagagg aggtaatgga tgagagatcc caaactataa gatcccagga acaggagggg
     1021 ttagagagag gagggagggt tacaaggtcc caggaagagg ccagaagaag tcatctggcc
     1081 agacatcagc aggagaaaga gatgaaaaca gcttctcccc ttgaggaaga agaaagagaa
     1141 ataaaacctt caaaaagctt ggaggaaaaa tccaagtccc cttcccctcc tcgattgact
     1201 gaagatctgg agaaggcccc tgttgtgcta caaccagagc aaactgctag tgaggaggag
     1261 actcccccac ctttacttac caaggaagca tcttctccac cacctaatac acaactccag
     1321 agtgaagaag aaatagaacc catggaaggc ccagcccctc ctgtccttat tcagttgtct
     1381 cctcctaata cagatgctga ggccagggag ctcttactgt ctcagcatac tgtgcagttg
     1441 gtgggaggtc tgtctccttt gtcaagccct gcagacacca aagtagaatc tccagtagag
     1501 aaagtgccag aggagagtgt cctgcctcta gttcagaaaa gcacacaagc tgaatcctca
     1561 acccagaagg gtcttgaaac tgaatcagaa aaatcagctc aaccactccc tctaaaaatc
     1621 gaggaattca cactggccaa agggatcacg gaggaatctt tggaacagaa ggaaggcagg
     1681 agggcttctc atactcttgt cccaagccac agatcgaaac ggtcagctga ctcatcctct
     1741 agccgatcct cctcatcgtc atcctccagt tctagatcaa gatctcgctc tcctgacagc
     1801 tcaggctctc agtctcattc acctccaaga tccaagcaga gaaatatatc tcaggcaggt
     1861 actcattcca accctcgtgg tagacccaag atgggctcca ggtcaacatc agaatccagg
     1921 tcccgttccc gttcccgttc ccgttcagcg tcaagcaaca gcagaagatc tctgagccct
     1981 ggagtctcca gggacagcag caccagctac actgaaacca aagatccctc ttctggtcag
     2041 gaggttgcaa ctccaccatt gccacagctt caggtccttg agccaaagga gaggacttcc
     2101 acctcaacct ctatccgagt gaggcgtatg agccaacctg agccagctga aaagcatgtg
     2161 acccagaggt tacagcctga gcgggggagc ccaaagaagt gtgaagctga agaggcagag
     2221 ccgccagctg ccacacagcc ccagacctca gagactccga cctcccacct accagaatca
     2281 gaaaggattc atcacactgt tgaggagaag gaggaagtga ccatggacac aagtgaaaac
     2341 agacctgaaa atgaggttcc agagcccccc atgcctattg cagaccaagt cagcaatgat
     2401 gatcgcccag agggcagtgc cgaggatgag gagaagaaag agagctcgct gcccaaatca
     2461 ttcaagagga agatctccgt tgtctcagct accaaggggg tgccagctgg aaacagtgac
     2521 acagaggggg gccagcctag tcggaagcgg cgttggggag ccagcacggc caccacacag
     2581 aagaaaccct ccatcagtat caccaccgaa tcactcaaga gcctcatccc cgacatcaaa
     2641 cccctggcgg ggcaggaggc tgttgtggat cttcatgctg acgactcccg aatctctgag
     2701 gatgagacag agcgtaatgg tgatgatggg acccatgaca aggggctgaa aatatgccgg
     2761 accgtcactc aggtggtgcc ttccgagggc caggagaatg ggcagaggga agaggaggaa
     2821 gaagagaagg agcctgaagc agaagcccct gtacctcccc aggtctcagt agaggtggcc
     2881 ttgcccccac ctgtggagca tgaagtaaag aaagtgactt taggagatac cttaactcga
     2941 cgttccatta gccagcagaa gtcgggagtt tccattacaa ttgatgaccc agtccggact
     3001 gctcaagtgc cctccccacc ccggggcaag atcagtaaca tcgtccacat ctccaatttg
     3061 gttcgtccct tcactttagg ccagctgaag gaattgttgg gacgtacagg aactctggta
     3121 gaagaggctt tctggattga caagatcaaa tctcactgct ttgtaacgta ctcgacagta
     3181 gaggaagcag ttgccacccg cacagctcta catggggtca aatggcccca gtccaacccc
     3241 aaattcctct gtgctgacta tgctgagcaa gatgagctgg attatcaccg aggcctcttg
     3301 gtggaccgtc cctctgaaac taagacagag gagcaggggg taccacggcc gctgcacccc
     3361 ccgcccccgc ccccagccca gccaccacag caccccaggg cagagcagcg ggagcaggag
     3421 cgggcggtga gggaacagtg ggcagagcgg gaacgggaga tggagcggcg ggagcgaacg
     3481 cgatcagagc gcgaatggga tcgggacaaa gttcgagaag ggccccgttc ccgatcacgg
     3541 tcccgtgacc gccgccgcaa ggaacgcgca aagtctaaag aaaagaagag tgagaagaaa
     3601 gagaaagctc aggaggaacc acctgccaag ctgctggacg accttttccg taagaccaag
     3661 gcggctccct gcatctattg gctcccactg actgacagcc agattgttca gaaggaggca
     3721 gagcgcgctg aacgggccaa ggagcgggag aagcggcgaa aggagcaaga agaagaagag
     3781 cagaaggagc gggagaagga ggcggagcgg gaacggaccc gacagctgga gcgagagaag
     3841 cggcgagagc acagccggga gagggacagg gagagagaga gggacaggga gcgggacagg
     3901 ggagatcgag atcgggagag ggacagggac cgggaacgag gcagggagag ggaccgcaga
     3961 gacaccaagc gccacagcag gagccggagt cggagcacgc ctgtgcggga ccggggtggg
     4021 cgccgctagc cgctagccgg gagaacacta gggagagctg caggcactgg ccaccctgcc
     4081 ccagggggct tcaaggccac agagggatag gtacagtctc caccaccctg gaaccagggg
     4141 tctttcacac catttgccca gtgctgaagt ctggctgcca cctgtcccca cataccaaat
     4201 ggagcagtgg gcatcttccc accctacccc cgtaatctat ctcttgggac ttagccctct
     4261 cctccctctc atttcccatt aagtctgtga gagggaggag ctatgttagg gagggaggtg
     4321 gttggcccag agctggggaa cagccaggag ccccaaacct ctctctcgtt tttcctccat
     4381 cctgctcacc acctcctttg gtacttgcac cccccttttg ggaacagccg gggccaggac
     4441 tgggtcacct atgagctgaa tcagcatctc ctcctgagtc ccagggcccc tgcagttccc
     4501 agtctctttg gtcctgcagc ccatgcctcc tgcccaccgg ttccacttta tatccacctt
     4561 ttccttttgt tcaattttta tttttatttt ttttattatt aaatgatgtg gtctatggaa
     4621 aataataaaa tctgacttag ttttaa
//
LOCUS       XM_032619477            4511 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apoptotic chromatin condensation inducer
            1 (ACIN1), transcript variant X2, mRNA.
ACCESSION   XM_032619477
VERSION     XM_032619477.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4511
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4511
                     /gene="ACIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747393"
     CDS             16..3894
                     /gene="ACIN1"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus isoform X2"
                     /protein_id="XP_032475368.1"
                     /db_xref="GeneID:116747393"
                     /translation="MPEAVGTDPSTSRKMAELEEVTLDGKPLQALRVTDLKAALEQRG
                     LAKSGQKSALVKRLKGALMLENLQKHSTPHAAFQPNSQIGEEMSQNSFIKQYLEKQQE
                     LLRQRLEREAREAAELEEASAESEDEMIHPEGVASLLPPDFQSSLERPELELSRHSPR
                     KSASISEEKGESDDEKPRKGERRSSRVRQARAAKLSECSQAAEEEEDQETPSRNLRLR
                     ADRNLKTEEEEEEDEEEEEEEEEEEDDDEGQKSRDAPVLKQFKEEEGEEKPSVKVEEV
                     MDERSQTIRSQEQEGLERGGRVTRSQEEARRSHLARHQQEKEMKTASPLEEEEREIKP
                     SKSLEEKSKSPSPPRLTEDLEKAPVVLQPEQTASEEETPPPLLTKEASSPPPNTQLQS
                     EEEIEPMEGPAPPVLIQLSPPNTDAEARELLLSQHTVQLVGGLSPLSSPADTKVESPV
                     EKVPEESVLPLVQKSTQAESSTQKGLETESEKSAQPLPLKIEEFTLAKGITEESLEQK
                     EGRRASHTLVPSHRSKRSADSSSSRSSSSSSSSSRSRSRSPDSSGSQSHSPPRSKQRN
                     ISQAGTHSNPRGRPKMGSRSTSESRSRSRSRSRSASSNSRRSLSPGVSRDSSTSYTET
                     KDPSSGQEVATPPLPQLQVLEPKERTSTSTSIRVRRMSQPEPAEKHVTQRLQPERGSP
                     KKCEAEEAEPPAATQPQTSETPTSHLPESERIHHTVEEKEEVTMDTSENRPENEVPEP
                     PMPIADQVSNDDRPEGSAEDEEKKESSLPKSFKRKISVVSTKGVPAGNSDTEGGQPSR
                     KRRWGASTATTQKKPSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRISEDETERN
                     GDDGTHDKGLKICRTVTQVVPSEGQENGQREEEEEEKEPEAEAPVPPQVSVEVALPPP
                     VEHEVKKVTLGDTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVR
                     PFTLGQLKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNP
                     KFLCADYAEQDELDYHRGLLVDRPSETKTEEQGVPRPLHPPPPPPAQPPQHPRAEQRE
                     QERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKK
                     SEKKEKAQEEPPAKLLDDLFRKTKAAPCIYWLPLTDSQIVQKEAERAERAKEREKRRK
                     EQEEEEQKEREKEAERERTRQLEREKRREHSRERDRERERDRERDRGDRDRERDRDRE
                     RGRERDRRDTKRHSRSRSRSTPVRDRGGRR"
     misc_feature    97..201
                     /gene="ACIN1"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    <511..1215
                     /gene="ACIN1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <994..1485
                     /gene="ACIN1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    2899..3159
                     /gene="ACIN1"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <3484..3576
                     /gene="ACIN1"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:465085"
ORIGIN      
        1 cggaaattac cgaagatgcc cgaagccgtc ggaacggacc cgagtacctc acgcaagatg
       61 gcggagctgg aggaggtgac tctggacggg aagcctcttc aggcgctgcg ggtgaccgac
      121 ctgaaggccg cactggagca gcgaggccta gccaagagcg ggcagaagag tgccctggtc
      181 aagcggctca aaggggctct aatgctagaa aatttacaga aacactcaac accccatgct
      241 gcattccagc caaattccca gattggcgag gaaatgagcc agaacagttt cataaagcag
      301 tatctggaaa agcagcagga gctgcttagg cagcgtctgg aacgtgaagc tcgagaagct
      361 gcagaacttg aagaagcttc agctgagtcg gaggacgaga tgatccatcc cgagggagtg
      421 gcttccctgc tgcctcctga ctttcagagc agcctggaga gaccagagct ggagctcagc
      481 agacattcac ccagaaaaag cgcctctatt tccgaagaga aaggtgaatc tgatgatgag
      541 aaaccaagga aaggagaaag acgatcatcc agagtcagac aggcaagagc agctaaactc
      601 tctgagtgca gccaggctgc tgaggaggaa gaggatcaag aaacaccttc cagaaatctg
      661 aggctcagag cagatcgaaa tttgaaaact gaagaggaag aagaagagga tgaggaagag
      721 gaagaagagg aggaagagga ggaagacgat gatgagggac aaaaatctag ggatgcacca
      781 gtcctgaagc agtttaagga agaagagggg gaagagaagc ccagtgtaaa agtagaggag
      841 gtaatggatg agagatccca aactataaga tcccaggaac aggaggggtt agagagagga
      901 gggagggtta caaggtccca ggaagaggcc agaagaagtc atctggccag acatcagcag
      961 gagaaagaga tgaaaacagc ttctcccctt gaggaagaag aaagagaaat aaaaccttca
     1021 aaaagcttgg aggaaaaatc caagtcccct tcccctcctc gattgactga agatctggag
     1081 aaggcccctg ttgtgctaca accagagcaa actgctagtg aggaggagac tcccccacct
     1141 ttacttacca aggaagcatc ttctccacca cctaatacac aactccagag tgaagaagaa
     1201 atagaaccca tggaaggccc agcccctcct gtccttattc agttgtctcc tcctaataca
     1261 gatgctgagg ccagggagct cttactgtct cagcatactg tgcagttggt gggaggtctg
     1321 tctcctttgt caagccctgc agacaccaaa gtagaatctc cagtagagaa agtgccagag
     1381 gagagtgtcc tgcctctagt tcagaaaagc acacaagctg aatcctcaac ccagaagggt
     1441 cttgaaactg aatcagaaaa atcagctcaa ccactccctc taaaaatcga ggaattcaca
     1501 ctggccaaag ggatcacgga ggaatctttg gaacagaagg aaggcaggag ggcttctcat
     1561 actcttgtcc caagccacag atcgaaacgg tcagctgact catcctctag ccgatcctcc
     1621 tcatcgtcat cctccagttc tagatcaaga tctcgctctc ctgacagctc aggctctcag
     1681 tctcattcac ctccaagatc caagcagaga aatatatctc aggcaggtac tcattccaac
     1741 cctcgtggta gacccaagat gggctccagg tcaacatcag aatccaggtc ccgttcccgt
     1801 tcccgttccc gttcagcgtc aagcaacagc agaagatctc tgagccctgg agtctccagg
     1861 gacagcagca ccagctacac tgaaaccaaa gatccctctt ctggtcagga ggttgcaact
     1921 ccaccattgc cacagcttca ggtccttgag ccaaaggaga ggacttccac ctcaacctct
     1981 atccgagtga ggcgtatgag ccaacctgag ccagctgaaa agcatgtgac ccagaggtta
     2041 cagcctgagc gggggagccc aaagaagtgt gaagctgaag aggcagagcc gccagctgcc
     2101 acacagcccc agacctcaga gactccgacc tcccacctac cagaatcaga aaggattcat
     2161 cacactgttg aggagaagga ggaagtgacc atggacacaa gtgaaaacag acctgaaaat
     2221 gaggttccag agccccccat gcctattgca gaccaagtca gcaatgatga tcgcccagag
     2281 ggcagtgccg aggatgagga gaagaaagag agctcgctgc ccaaatcatt caagaggaag
     2341 atctccgttg tctctaccaa gggggtgcca gctggaaaca gtgacacaga ggggggccag
     2401 cctagtcgga agcggcgttg gggagccagc acggccacca cacagaagaa accctccatc
     2461 agtatcacca ccgaatcact caagagcctc atccccgaca tcaaacccct ggcggggcag
     2521 gaggctgttg tggatcttca tgctgacgac tcccgaatct ctgaggatga gacagagcgt
     2581 aatggtgatg atgggaccca tgacaagggg ctgaaaatat gccggaccgt cactcaggtg
     2641 gtgccttccg agggccagga gaatgggcag agggaagagg aggaagaaga gaaggagcct
     2701 gaagcagaag cccctgtacc tccccaggtc tcagtagagg tggccttgcc cccacctgtg
     2761 gagcatgaag taaagaaagt gactttagga gataccttaa ctcgacgttc cattagccag
     2821 cagaagtcgg gagtttccat tacaattgat gacccagtcc ggactgctca agtgccctcc
     2881 ccaccccggg gcaagatcag taacatcgtc cacatctcca atttggttcg tcccttcact
     2941 ttaggccagc tgaaggaatt gttgggacgt acaggaactc tggtagaaga ggctttctgg
     3001 attgacaaga tcaaatctca ctgctttgta acgtactcga cagtagagga agcagttgcc
     3061 acccgcacag ctctacatgg ggtcaaatgg ccccagtcca accccaaatt cctctgtgct
     3121 gactatgctg agcaagatga gctggattat caccgaggcc tcttggtgga ccgtccctct
     3181 gaaactaaga cagaggagca gggggtacca cggccgctgc accccccgcc cccgccccca
     3241 gcccagccac cacagcaccc cagggcagag cagcgggagc aggagcgggc ggtgagggaa
     3301 cagtgggcag agcgggaacg ggagatggag cggcgggagc gaacgcgatc agagcgcgaa
     3361 tgggatcggg acaaagttcg agaagggccc cgttcccgat cacggtcccg tgaccgccgc
     3421 cgcaaggaac gcgcaaagtc taaagaaaag aagagtgaga agaaagagaa agctcaggag
     3481 gaaccacctg ccaagctgct ggacgacctt ttccgtaaga ccaaggcggc tccctgcatc
     3541 tattggctcc cactgactga cagccagatt gttcagaagg aggcagagcg cgctgaacgg
     3601 gccaaggagc gggagaagcg gcgaaaggag caagaagaag aagagcagaa ggagcgggag
     3661 aaggaggcgg agcgggaacg gacccgacag ctggagcgag agaagcggcg agagcacagc
     3721 cgggagaggg acagggagag agagagggac agggagcggg acaggggaga tcgagatcgg
     3781 gagagggaca gggaccggga acgaggcagg gagagggacc gcagagacac caagcgccac
     3841 agcaggagcc ggagtcggag cacgcctgtg cgggaccggg gtgggcgccg ctagccgcta
     3901 gccgggagaa cactagggag agctgcaggc actggccacc ctgccccagg gggcttcaag
     3961 gccacagagg gataggtaca gtctccacca ccctggaacc aggggtcttt cacaccattt
     4021 gcccagtgct gaagtctggc tgccacctgt ccccacatac caaatggagc agtgggcatc
     4081 ttcccaccct acccccgtaa tctatctctt gggacttagc cctctcctcc ctctcatttc
     4141 ccattaagtc tgtgagaggg aggagctatg ttagggaggg aggtggttgg cccagagctg
     4201 gggaacagcc aggagcccca aacctctctc tcgtttttcc tccatcctgc tcaccacctc
     4261 ctttggtact tgcacccccc ttttgggaac agccggggcc aggactgggt cacctatgag
     4321 ctgaatcagc atctcctcct gagtcccagg gcccctgcag ttcccagtct ctttggtcct
     4381 gcagcccatg cctcctgccc accggttcca ctttatatcc accttttcct tttgttcaat
     4441 ttttattttt atttttttta ttattaaatg atgtggtcta tggaaaataa taaaatctga
     4501 cttagtttta a
//
LOCUS       XM_032619487            4478 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apoptotic chromatin condensation inducer
            1 (ACIN1), transcript variant X3, mRNA.
ACCESSION   XM_032619487
VERSION     XM_032619487.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4478
                     /gene="ACIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747393"
     CDS             16..3861
                     /gene="ACIN1"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus isoform X3"
                     /protein_id="XP_032475378.1"
                     /db_xref="GeneID:116747393"
                     /translation="MPEAVGTDPSTSRKMAELEEVTLDGKPLQALRVTDLKAALEQRG
                     LAKSGQKSALVKRLKGALMLENLQKHSTPHAAFQPNSQIGEEMSQNSFIKQYLEKQQE
                     LLRQRLEREAREAAELEEASAESEDEMIHPEGVASLLPPDFQSSLERPELELSRHSPR
                     KSASISEEKGESDDEKPRKGERRSSRVRQARAAKLSECSQAAEEEEDQETPSRNLRLR
                     ADRNLKTEEEEEEDEEEEEEEEEEEDDDEGQKSRDAPVLKQFKEEEGEEKPSVKVEEV
                     MDERSQTIRSQEQEGLERGGRVTRSQEEARRSHLARHQQEKEMKTASPLEEEEREIKP
                     SKSLEEKSKSPSPPRLTEDLEKAPVVLQPEQTASEEETPPPLLTKEASSPPPNTQLQS
                     EEEIEPMEGPAPPVLIQLSPPNTDAEARELLLSQHTVQLVGGLSPLSSPADTKVESPV
                     EKVPEESVLPLVQKSTQAESSTQKGLETESEKSAQPLPLKIEEFTLAKGITEESLEQK
                     EGRRASHTLVPSHRSKRSADSSSSRSSSSSSSSSRSRSRSPDSSGSQSHSPPRSKQRN
                     ISQAGTHSNPRGRPKMGSRSTSESRSRSRSRSRSASSNSRRSLSPGVSRDSSTSYTET
                     KDPSSGQEVATPPLPQLQVLEPKERTSTSTSIRVRRMSQPEPAEKHVTQRLQPERGSP
                     KKCEAEEAEPPAATQPQTSETPTSHLPESERIHHTVEEKEEVTMDTSENRPENEVPEP
                     PMPIADQVSNDDRPEGSAEDEEKKESSLPKSFKRKISVVSATKGVPAGNSDTEGGQPS
                     RKRRWGASTATTQKKPSISITTESLKEAVVDLHADDSRISEDETERNGDDGTHDKGLK
                     ICRTVTQVVPSEGQENGQREEEEEEKEPEAEAPVPPQVSVEVALPPPVEHEVKKVTLG
                     DTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKELL
                     GRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYAEQD
                     ELDYHRGLLVDRPSETKTEEQGVPRPLHPPPPPPAQPPQHPRAEQREQERAVREQWAE
                     REREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSEKKEKAQEEP
                     PAKLLDDLFRKTKAAPCIYWLPLTDSQIVQKEAERAERAKEREKRRKEQEEEEQKERE
                     KEAERERTRQLEREKRREHSRERDRERERDRERDRGDRDRERDRDRERGRERDRRDTK
                     RHSRSRSRSTPVRDRGGRR"
     misc_feature    97..201
                     /gene="ACIN1"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    <511..1215
                     /gene="ACIN1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <994..1485
                     /gene="ACIN1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    2866..3126
                     /gene="ACIN1"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <3451..3543
                     /gene="ACIN1"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:465085"
ORIGIN      
        1 cggaaattac cgaagatgcc cgaagccgtc ggaacggacc cgagtacctc acgcaagatg
       61 gcggagctgg aggaggtgac tctggacggg aagcctcttc aggcgctgcg ggtgaccgac
      121 ctgaaggccg cactggagca gcgaggccta gccaagagcg ggcagaagag tgccctggtc
      181 aagcggctca aaggggctct aatgctagaa aatttacaga aacactcaac accccatgct
      241 gcattccagc caaattccca gattggcgag gaaatgagcc agaacagttt cataaagcag
      301 tatctggaaa agcagcagga gctgcttagg cagcgtctgg aacgtgaagc tcgagaagct
      361 gcagaacttg aagaagcttc agctgagtcg gaggacgaga tgatccatcc cgagggagtg
      421 gcttccctgc tgcctcctga ctttcagagc agcctggaga gaccagagct ggagctcagc
      481 agacattcac ccagaaaaag cgcctctatt tccgaagaga aaggtgaatc tgatgatgag
      541 aaaccaagga aaggagaaag acgatcatcc agagtcagac aggcaagagc agctaaactc
      601 tctgagtgca gccaggctgc tgaggaggaa gaggatcaag aaacaccttc cagaaatctg
      661 aggctcagag cagatcgaaa tttgaaaact gaagaggaag aagaagagga tgaggaagag
      721 gaagaagagg aggaagagga ggaagacgat gatgagggac aaaaatctag ggatgcacca
      781 gtcctgaagc agtttaagga agaagagggg gaagagaagc ccagtgtaaa agtagaggag
      841 gtaatggatg agagatccca aactataaga tcccaggaac aggaggggtt agagagagga
      901 gggagggtta caaggtccca ggaagaggcc agaagaagtc atctggccag acatcagcag
      961 gagaaagaga tgaaaacagc ttctcccctt gaggaagaag aaagagaaat aaaaccttca
     1021 aaaagcttgg aggaaaaatc caagtcccct tcccctcctc gattgactga agatctggag
     1081 aaggcccctg ttgtgctaca accagagcaa actgctagtg aggaggagac tcccccacct
     1141 ttacttacca aggaagcatc ttctccacca cctaatacac aactccagag tgaagaagaa
     1201 atagaaccca tggaaggccc agcccctcct gtccttattc agttgtctcc tcctaataca
     1261 gatgctgagg ccagggagct cttactgtct cagcatactg tgcagttggt gggaggtctg
     1321 tctcctttgt caagccctgc agacaccaaa gtagaatctc cagtagagaa agtgccagag
     1381 gagagtgtcc tgcctctagt tcagaaaagc acacaagctg aatcctcaac ccagaagggt
     1441 cttgaaactg aatcagaaaa atcagctcaa ccactccctc taaaaatcga ggaattcaca
     1501 ctggccaaag ggatcacgga ggaatctttg gaacagaagg aaggcaggag ggcttctcat
     1561 actcttgtcc caagccacag atcgaaacgg tcagctgact catcctctag ccgatcctcc
     1621 tcatcgtcat cctccagttc tagatcaaga tctcgctctc ctgacagctc aggctctcag
     1681 tctcattcac ctccaagatc caagcagaga aatatatctc aggcaggtac tcattccaac
     1741 cctcgtggta gacccaagat gggctccagg tcaacatcag aatccaggtc ccgttcccgt
     1801 tcccgttccc gttcagcgtc aagcaacagc agaagatctc tgagccctgg agtctccagg
     1861 gacagcagca ccagctacac tgaaaccaaa gatccctctt ctggtcagga ggttgcaact
     1921 ccaccattgc cacagcttca ggtccttgag ccaaaggaga ggacttccac ctcaacctct
     1981 atccgagtga ggcgtatgag ccaacctgag ccagctgaaa agcatgtgac ccagaggtta
     2041 cagcctgagc gggggagccc aaagaagtgt gaagctgaag aggcagagcc gccagctgcc
     2101 acacagcccc agacctcaga gactccgacc tcccacctac cagaatcaga aaggattcat
     2161 cacactgttg aggagaagga ggaagtgacc atggacacaa gtgaaaacag acctgaaaat
     2221 gaggttccag agccccccat gcctattgca gaccaagtca gcaatgatga tcgcccagag
     2281 ggcagtgccg aggatgagga gaagaaagag agctcgctgc ccaaatcatt caagaggaag
     2341 atctccgttg tctcagctac caagggggtg ccagctggaa acagtgacac agaggggggc
     2401 cagcctagtc ggaagcggcg ttggggagcc agcacggcca ccacacagaa gaaaccctcc
     2461 atcagtatca ccaccgaatc actcaaggag gctgttgtgg atcttcatgc tgacgactcc
     2521 cgaatctctg aggatgagac agagcgtaat ggtgatgatg ggacccatga caaggggctg
     2581 aaaatatgcc ggaccgtcac tcaggtggtg ccttccgagg gccaggagaa tgggcagagg
     2641 gaagaggagg aagaagagaa ggagcctgaa gcagaagccc ctgtacctcc ccaggtctca
     2701 gtagaggtgg ccttgccccc acctgtggag catgaagtaa agaaagtgac tttaggagat
     2761 accttaactc gacgttccat tagccagcag aagtcgggag tttccattac aattgatgac
     2821 ccagtccgga ctgctcaagt gccctcccca ccccggggca agatcagtaa catcgtccac
     2881 atctccaatt tggttcgtcc cttcacttta ggccagctga aggaattgtt gggacgtaca
     2941 ggaactctgg tagaagaggc tttctggatt gacaagatca aatctcactg ctttgtaacg
     3001 tactcgacag tagaggaagc agttgccacc cgcacagctc tacatggggt caaatggccc
     3061 cagtccaacc ccaaattcct ctgtgctgac tatgctgagc aagatgagct ggattatcac
     3121 cgaggcctct tggtggaccg tccctctgaa actaagacag aggagcaggg ggtaccacgg
     3181 ccgctgcacc ccccgccccc gcccccagcc cagccaccac agcaccccag ggcagagcag
     3241 cgggagcagg agcgggcggt gagggaacag tgggcagagc gggaacggga gatggagcgg
     3301 cgggagcgaa cgcgatcaga gcgcgaatgg gatcgggaca aagttcgaga agggccccgt
     3361 tcccgatcac ggtcccgtga ccgccgccgc aaggaacgcg caaagtctaa agaaaagaag
     3421 agtgagaaga aagagaaagc tcaggaggaa ccacctgcca agctgctgga cgaccttttc
     3481 cgtaagacca aggcggctcc ctgcatctat tggctcccac tgactgacag ccagattgtt
     3541 cagaaggagg cagagcgcgc tgaacgggcc aaggagcggg agaagcggcg aaaggagcaa
     3601 gaagaagaag agcagaagga gcgggagaag gaggcggagc gggaacggac ccgacagctg
     3661 gagcgagaga agcggcgaga gcacagccgg gagagggaca gggagagaga gagggacagg
     3721 gagcgggaca ggggagatcg agatcgggag agggacaggg accgggaacg aggcagggag
     3781 agggaccgca gagacaccaa gcgccacagc aggagccgga gtcggagcac gcctgtgcgg
     3841 gaccggggtg ggcgccgcta gccgctagcc gggagaacac tagggagagc tgcaggcact
     3901 ggccaccctg ccccaggggg cttcaaggcc acagagggat aggtacagtc tccaccaccc
     3961 tggaaccagg ggtctttcac accatttgcc cagtgctgaa gtctggctgc cacctgtccc
     4021 cacataccaa atggagcagt gggcatcttc ccaccctacc cccgtaatct atctcttggg
     4081 acttagccct ctcctccctc tcatttccca ttaagtctgt gagagggagg agctatgtta
     4141 gggagggagg tggttggccc agagctgggg aacagccagg agccccaaac ctctctctcg
     4201 tttttcctcc atcctgctca ccacctcctt tggtacttgc accccccttt tgggaacagc
     4261 cggggccagg actgggtcac ctatgagctg aatcagcatc tcctcctgag tcccagggcc
     4321 cctgcagttc ccagtctctt tggtcctgca gcccatgcct cctgcccacc ggttccactt
     4381 tatatccacc ttttcctttt gttcaatttt tatttttatt ttttttatta ttaaatgatg
     4441 tggtctatgg aaaataataa aatctgactt agttttaa
//
LOCUS       XM_032619495            4607 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apoptotic chromatin condensation inducer
            1 (ACIN1), transcript variant X4, mRNA.
ACCESSION   XM_032619495
VERSION     XM_032619495.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4607
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4607
                     /gene="ACIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747393"
     CDS             16..3990
                     /gene="ACIN1"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus isoform X4"
                     /protein_id="XP_032475386.1"
                     /db_xref="GeneID:116747393"
                     /translation="MWRRKHPRISGGTRGVLSGNRGVDYGSGRGQLGTFEGRWRKLPK
                     MPEAVGTDPSTSRKMAELEEVTLDGKPLQALRVTDLKAALEQRGLAKSGQKSALVKRL
                     KGALMLENLQKHSTPHAAFQPNSQIGEEMSQNSFIKQYLEKQQELLRQRLEREAREAA
                     ELEEASAESEDEMIHPEGVASLLPPDFQSSLERPELELSRHSPRKSASISEEKGESDD
                     EKPRKGERRSSRVRQARAAKLSECSQAAEEEEDQETPSRNLRLRADRNLKTEEEEEED
                     EEEEEEEEEEEDDDEGQKSRDAPVLKQFKEEEGEEKPSVKVEEVMDERSQTIRSQEQE
                     GLERGGRVTRSQEEARRSHLARHQQEKEMKTASPLEEEEREIKPSKSLEEKSKSPSPP
                     RLTEDLEKAPVVLQPEQTASEEETPPPLLTKEASSPPPNTQLQSEEEIEPMEGPAPPV
                     LIQLSPPNTDAEARELLLSQHTVQLVGGLSPLSSPADTKVESPVEKVPEESVLPLVQK
                     STQAESSTQKGLETESEKSAQPLPLKIEEFTLAKGITEESLEQKEGRRASHTLVPSHR
                     SKRSADSSSSRSSSSSSSSSRSRSRSPDSSGSQSHSPPRSKQRNISQAGTHSNPRGRP
                     KMGSRSTSESRSRSRSRSRSASSNSRRSLSPGVSRDSSTSYTETKDPSSGQEVATPPL
                     PQLQVLEPKERTSTSTSIRVRRMSQPEPAEKHVTQRLQPERGSPKKCEAEEAEPPAAT
                     QPQTSETPTSHLPESERIHHTVEEKEEVTMDTSENRPENEVPEPPMPIADQVSNDDRP
                     EGSAEDEEKKESSLPKSFKRKISVVSTKGVPAGNSDTEGGQPSRKRRWGASTATTQKK
                     PSISITTESLKEAVVDLHADDSRISEDETERNGDDGTHDKGLKICRTVTQVVPSEGQE
                     NGQREEEEEEKEPEAEAPVPPQVSVEVALPPPVEHEVKKVTLGDTLTRRSISQQKSGV
                     SITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKELLGRTGTLVEEAFWIDK
                     IKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYAEQDELDYHRGLLVDRPSE
                     TKTEEQGVPRPLHPPPPPPAQPPQHPRAEQREQERAVREQWAEREREMERRERTRSER
                     EWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSEKKEKAQEEPPAKLLDDLFRKTKAA
                     PCIYWLPLTDSQIVQKEAERAERAKEREKRRKEQEEEEQKEREKEAERERTRQLEREK
                     RREHSRERDRERERDRERDRGDRDRERDRDRERGRERDRRDTKRHSRSRSRSTPVRDR
                     GGRR"
     misc_feature    229..333
                     /gene="ACIN1"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    <643..1347
                     /gene="ACIN1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1126..1617
                     /gene="ACIN1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    2995..3255
                     /gene="ACIN1"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <3580..3672
                     /gene="ACIN1"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:465085"
ORIGIN      
        1 aaccaattgg tgccgatgtg gagacggaaa cacccgagaa tttccggagg aacccgggga
       61 gttctgagtg gtaatcgagg ggttgactat ggaagtgggc ggggccaact cggtacgttc
      121 gaagggcgtt ggcggaaatt accgaagatg cccgaagccg tcggaacgga cccgagtacc
      181 tcacgcaaga tggcggagct ggaggaggtg actctggacg ggaagcctct tcaggcgctg
      241 cgggtgaccg acctgaaggc cgcactggag cagcgaggcc tagccaagag cgggcagaag
      301 agtgccctgg tcaagcggct caaaggggct ctaatgctag aaaatttaca gaaacactca
      361 acaccccatg ctgcattcca gccaaattcc cagattggcg aggaaatgag ccagaacagt
      421 ttcataaagc agtatctgga aaagcagcag gagctgctta ggcagcgtct ggaacgtgaa
      481 gctcgagaag ctgcagaact tgaagaagct tcagctgagt cggaggacga gatgatccat
      541 cccgagggag tggcttccct gctgcctcct gactttcaga gcagcctgga gagaccagag
      601 ctggagctca gcagacattc acccagaaaa agcgcctcta tttccgaaga gaaaggtgaa
      661 tctgatgatg agaaaccaag gaaaggagaa agacgatcat ccagagtcag acaggcaaga
      721 gcagctaaac tctctgagtg cagccaggct gctgaggagg aagaggatca agaaacacct
      781 tccagaaatc tgaggctcag agcagatcga aatttgaaaa ctgaagagga agaagaagag
      841 gatgaggaag aggaagaaga ggaggaagag gaggaagacg atgatgaggg acaaaaatct
      901 agggatgcac cagtcctgaa gcagtttaag gaagaagagg gggaagagaa gcccagtgta
      961 aaagtagagg aggtaatgga tgagagatcc caaactataa gatcccagga acaggagggg
     1021 ttagagagag gagggagggt tacaaggtcc caggaagagg ccagaagaag tcatctggcc
     1081 agacatcagc aggagaaaga gatgaaaaca gcttctcccc ttgaggaaga agaaagagaa
     1141 ataaaacctt caaaaagctt ggaggaaaaa tccaagtccc cttcccctcc tcgattgact
     1201 gaagatctgg agaaggcccc tgttgtgcta caaccagagc aaactgctag tgaggaggag
     1261 actcccccac ctttacttac caaggaagca tcttctccac cacctaatac acaactccag
     1321 agtgaagaag aaatagaacc catggaaggc ccagcccctc ctgtccttat tcagttgtct
     1381 cctcctaata cagatgctga ggccagggag ctcttactgt ctcagcatac tgtgcagttg
     1441 gtgggaggtc tgtctccttt gtcaagccct gcagacacca aagtagaatc tccagtagag
     1501 aaagtgccag aggagagtgt cctgcctcta gttcagaaaa gcacacaagc tgaatcctca
     1561 acccagaagg gtcttgaaac tgaatcagaa aaatcagctc aaccactccc tctaaaaatc
     1621 gaggaattca cactggccaa agggatcacg gaggaatctt tggaacagaa ggaaggcagg
     1681 agggcttctc atactcttgt cccaagccac agatcgaaac ggtcagctga ctcatcctct
     1741 agccgatcct cctcatcgtc atcctccagt tctagatcaa gatctcgctc tcctgacagc
     1801 tcaggctctc agtctcattc acctccaaga tccaagcaga gaaatatatc tcaggcaggt
     1861 actcattcca accctcgtgg tagacccaag atgggctcca ggtcaacatc agaatccagg
     1921 tcccgttccc gttcccgttc ccgttcagcg tcaagcaaca gcagaagatc tctgagccct
     1981 ggagtctcca gggacagcag caccagctac actgaaacca aagatccctc ttctggtcag
     2041 gaggttgcaa ctccaccatt gccacagctt caggtccttg agccaaagga gaggacttcc
     2101 acctcaacct ctatccgagt gaggcgtatg agccaacctg agccagctga aaagcatgtg
     2161 acccagaggt tacagcctga gcgggggagc ccaaagaagt gtgaagctga agaggcagag
     2221 ccgccagctg ccacacagcc ccagacctca gagactccga cctcccacct accagaatca
     2281 gaaaggattc atcacactgt tgaggagaag gaggaagtga ccatggacac aagtgaaaac
     2341 agacctgaaa atgaggttcc agagcccccc atgcctattg cagaccaagt cagcaatgat
     2401 gatcgcccag agggcagtgc cgaggatgag gagaagaaag agagctcgct gcccaaatca
     2461 ttcaagagga agatctccgt tgtctctacc aagggggtgc cagctggaaa cagtgacaca
     2521 gaggggggcc agcctagtcg gaagcggcgt tggggagcca gcacggccac cacacagaag
     2581 aaaccctcca tcagtatcac caccgaatca ctcaaggagg ctgttgtgga tcttcatgct
     2641 gacgactccc gaatctctga ggatgagaca gagcgtaatg gtgatgatgg gacccatgac
     2701 aaggggctga aaatatgccg gaccgtcact caggtggtgc cttccgaggg ccaggagaat
     2761 gggcagaggg aagaggagga agaagagaag gagcctgaag cagaagcccc tgtacctccc
     2821 caggtctcag tagaggtggc cttgccccca cctgtggagc atgaagtaaa gaaagtgact
     2881 ttaggagata ccttaactcg acgttccatt agccagcaga agtcgggagt ttccattaca
     2941 attgatgacc cagtccggac tgctcaagtg ccctccccac cccggggcaa gatcagtaac
     3001 atcgtccaca tctccaattt ggttcgtccc ttcactttag gccagctgaa ggaattgttg
     3061 ggacgtacag gaactctggt agaagaggct ttctggattg acaagatcaa atctcactgc
     3121 tttgtaacgt actcgacagt agaggaagca gttgccaccc gcacagctct acatggggtc
     3181 aaatggcccc agtccaaccc caaattcctc tgtgctgact atgctgagca agatgagctg
     3241 gattatcacc gaggcctctt ggtggaccgt ccctctgaaa ctaagacaga ggagcagggg
     3301 gtaccacggc cgctgcaccc cccgcccccg cccccagccc agccaccaca gcaccccagg
     3361 gcagagcagc gggagcagga gcgggcggtg agggaacagt gggcagagcg ggaacgggag
     3421 atggagcggc gggagcgaac gcgatcagag cgcgaatggg atcgggacaa agttcgagaa
     3481 gggccccgtt cccgatcacg gtcccgtgac cgccgccgca aggaacgcgc aaagtctaaa
     3541 gaaaagaaga gtgagaagaa agagaaagct caggaggaac cacctgccaa gctgctggac
     3601 gaccttttcc gtaagaccaa ggcggctccc tgcatctatt ggctcccact gactgacagc
     3661 cagattgttc agaaggaggc agagcgcgct gaacgggcca aggagcggga gaagcggcga
     3721 aaggagcaag aagaagaaga gcagaaggag cgggagaagg aggcggagcg ggaacggacc
     3781 cgacagctgg agcgagagaa gcggcgagag cacagccggg agagggacag ggagagagag
     3841 agggacaggg agcgggacag gggagatcga gatcgggaga gggacaggga ccgggaacga
     3901 ggcagggaga gggaccgcag agacaccaag cgccacagca ggagccggag tcggagcacg
     3961 cctgtgcggg accggggtgg gcgccgctag ccgctagccg ggagaacact agggagagct
     4021 gcaggcactg gccaccctgc cccagggggc ttcaaggcca cagagggata ggtacagtct
     4081 ccaccaccct ggaaccaggg gtctttcaca ccatttgccc agtgctgaag tctggctgcc
     4141 acctgtcccc acataccaaa tggagcagtg ggcatcttcc caccctaccc ccgtaatcta
     4201 tctcttggga cttagccctc tcctccctct catttcccat taagtctgtg agagggagga
     4261 gctatgttag ggagggaggt ggttggccca gagctgggga acagccagga gccccaaacc
     4321 tctctctcgt ttttcctcca tcctgctcac cacctccttt ggtacttgca cccccctttt
     4381 gggaacagcc ggggccagga ctgggtcacc tatgagctga atcagcatct cctcctgagt
     4441 cccagggccc ctgcagttcc cagtctcttt ggtcctgcag cccatgcctc ctgcccaccg
     4501 gttccacttt atatccacct tttccttttg ttcaattttt atttttattt tttttattat
     4561 taaatgatgt ggtctatgga aaataataaa atctgactta gttttaa
//
LOCUS       XM_032619505            4526 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apoptotic chromatin condensation inducer
            1 (ACIN1), transcript variant X5, mRNA.
ACCESSION   XM_032619505
VERSION     XM_032619505.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4526
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4526
                     /gene="ACIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747393"
     CDS             16..3909
                     /gene="ACIN1"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus isoform X5"
                     /protein_id="XP_032475396.1"
                     /db_xref="GeneID:116747393"
                     /translation="MWRRKHPRISGGTRGVLSGNRGVDYGSGRGQLGTFEGRWRKLPK
                     MPEAVGTDPSTSRKMAELEEVTLDGKPLQALRVTDLKAALEQRGLAKSGQKSALVKRL
                     KGALMLENLQKHSTPHAAFQPNSQIGEEMSQNSFIKQYLEKQQELLRQRLEREAREAA
                     ELEGKSASISEEKGESDDEKPRKGERRSSRVRQARAAKLSECSQAAEEEEDQETPSRN
                     LRLRADRNLKTEEEEEEDEEEEEEEEEEEDDDEGQKSRDAPVLKQFKEEEGEEKPSVK
                     VEEVMDERSQTIRSQEQEGLERGGRVTRSQEEARRSHLARHQQEKEMKTASPLEEEER
                     EIKPSKSLEEKSKSPSPPRLTEDLEKAPVVLQPEQTASEEETPPPLLTKEASSPPPNT
                     QLQSEEEIEPMEGPAPPVLIQLSPPNTDAEARELLLSQHTVQLVGGLSPLSSPADTKV
                     ESPVEKVPEESVLPLVQKSTQAESSTQKGLETESEKSAQPLPLKIEEFTLAKGITEES
                     LEQKEGRRASHTLVPSHRSKRSADSSSSRSSSSSSSSSRSRSRSPDSSGSQSHSPPRS
                     KQRNISQAGTHSNPRGRPKMGSRSTSESRSRSRSRSRSASSNSRRSLSPGVSRDSSTS
                     YTETKDPSSGQEVATPPLPQLQVLEPKERTSTSTSIRVRRMSQPEPAEKHVTQRLQPE
                     RGSPKKCEAEEAEPPAATQPQTSETPTSHLPESERIHHTVEEKEEVTMDTSENRPENE
                     VPEPPMPIADQVSNDDRPEGSAEDEEKKESSLPKSFKRKISVVSATKGVPAGNSDTEG
                     GQPSRKRRWGASTATTQKKPSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRISED
                     ETERNGDDGTHDKGLKICRTVTQVVPSEGQENGQREEEEEEKEPEAEAPVPPQVSVEV
                     ALPPPVEHEVKKVTLGDTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHI
                     SNLVRPFTLGQLKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKW
                     PQSNPKFLCADYAEQDELDYHRGLLVDRPSETKTEEQGVPRPLHPPPPPPAQPPQHPR
                     AEQREQERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERAK
                     SKEKKSEKKEKAQEEPPAKLLDDLFRKTKAAPCIYWLPLTDSQIVQKEAERAERAKER
                     EKRRKEQEEEEQKEREKEAERERTRQLEREKRREHSRERDRERERDRERDRGDRDRER
                     DRDRERGRERDRRDTKRHSRSRSRSTPVRDRGGRR"
     misc_feature    <145..1227
                     /gene="ACIN1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    229..333
                     /gene="ACIN1"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    <1006..1497
                     /gene="ACIN1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    2914..3174
                     /gene="ACIN1"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <3499..3591
                     /gene="ACIN1"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:465085"
ORIGIN      
        1 aaccaattgg tgccgatgtg gagacggaaa cacccgagaa tttccggagg aacccgggga
       61 gttctgagtg gtaatcgagg ggttgactat ggaagtgggc ggggccaact cggtacgttc
      121 gaagggcgtt ggcggaaatt accgaagatg cccgaagccg tcggaacgga cccgagtacc
      181 tcacgcaaga tggcggagct ggaggaggtg actctggacg ggaagcctct tcaggcgctg
      241 cgggtgaccg acctgaaggc cgcactggag cagcgaggcc tagccaagag cgggcagaag
      301 agtgccctgg tcaagcggct caaaggggct ctaatgctag aaaatttaca gaaacactca
      361 acaccccatg ctgcattcca gccaaattcc cagattggcg aggaaatgag ccagaacagt
      421 ttcataaagc agtatctgga aaagcagcag gagctgctta ggcagcgtct ggaacgtgaa
      481 gctcgagaag ctgcagaact tgaaggaaaa agcgcctcta tttccgaaga gaaaggtgaa
      541 tctgatgatg agaaaccaag gaaaggagaa agacgatcat ccagagtcag acaggcaaga
      601 gcagctaaac tctctgagtg cagccaggct gctgaggagg aagaggatca agaaacacct
      661 tccagaaatc tgaggctcag agcagatcga aatttgaaaa ctgaagagga agaagaagag
      721 gatgaggaag aggaagaaga ggaggaagag gaggaagacg atgatgaggg acaaaaatct
      781 agggatgcac cagtcctgaa gcagtttaag gaagaagagg gggaagagaa gcccagtgta
      841 aaagtagagg aggtaatgga tgagagatcc caaactataa gatcccagga acaggagggg
      901 ttagagagag gagggagggt tacaaggtcc caggaagagg ccagaagaag tcatctggcc
      961 agacatcagc aggagaaaga gatgaaaaca gcttctcccc ttgaggaaga agaaagagaa
     1021 ataaaacctt caaaaagctt ggaggaaaaa tccaagtccc cttcccctcc tcgattgact
     1081 gaagatctgg agaaggcccc tgttgtgcta caaccagagc aaactgctag tgaggaggag
     1141 actcccccac ctttacttac caaggaagca tcttctccac cacctaatac acaactccag
     1201 agtgaagaag aaatagaacc catggaaggc ccagcccctc ctgtccttat tcagttgtct
     1261 cctcctaata cagatgctga ggccagggag ctcttactgt ctcagcatac tgtgcagttg
     1321 gtgggaggtc tgtctccttt gtcaagccct gcagacacca aagtagaatc tccagtagag
     1381 aaagtgccag aggagagtgt cctgcctcta gttcagaaaa gcacacaagc tgaatcctca
     1441 acccagaagg gtcttgaaac tgaatcagaa aaatcagctc aaccactccc tctaaaaatc
     1501 gaggaattca cactggccaa agggatcacg gaggaatctt tggaacagaa ggaaggcagg
     1561 agggcttctc atactcttgt cccaagccac agatcgaaac ggtcagctga ctcatcctct
     1621 agccgatcct cctcatcgtc atcctccagt tctagatcaa gatctcgctc tcctgacagc
     1681 tcaggctctc agtctcattc acctccaaga tccaagcaga gaaatatatc tcaggcaggt
     1741 actcattcca accctcgtgg tagacccaag atgggctcca ggtcaacatc agaatccagg
     1801 tcccgttccc gttcccgttc ccgttcagcg tcaagcaaca gcagaagatc tctgagccct
     1861 ggagtctcca gggacagcag caccagctac actgaaacca aagatccctc ttctggtcag
     1921 gaggttgcaa ctccaccatt gccacagctt caggtccttg agccaaagga gaggacttcc
     1981 acctcaacct ctatccgagt gaggcgtatg agccaacctg agccagctga aaagcatgtg
     2041 acccagaggt tacagcctga gcgggggagc ccaaagaagt gtgaagctga agaggcagag
     2101 ccgccagctg ccacacagcc ccagacctca gagactccga cctcccacct accagaatca
     2161 gaaaggattc atcacactgt tgaggagaag gaggaagtga ccatggacac aagtgaaaac
     2221 agacctgaaa atgaggttcc agagcccccc atgcctattg cagaccaagt cagcaatgat
     2281 gatcgcccag agggcagtgc cgaggatgag gagaagaaag agagctcgct gcccaaatca
     2341 ttcaagagga agatctccgt tgtctcagct accaaggggg tgccagctgg aaacagtgac
     2401 acagaggggg gccagcctag tcggaagcgg cgttggggag ccagcacggc caccacacag
     2461 aagaaaccct ccatcagtat caccaccgaa tcactcaaga gcctcatccc cgacatcaaa
     2521 cccctggcgg ggcaggaggc tgttgtggat cttcatgctg acgactcccg aatctctgag
     2581 gatgagacag agcgtaatgg tgatgatggg acccatgaca aggggctgaa aatatgccgg
     2641 accgtcactc aggtggtgcc ttccgagggc caggagaatg ggcagaggga agaggaggaa
     2701 gaagagaagg agcctgaagc agaagcccct gtacctcccc aggtctcagt agaggtggcc
     2761 ttgcccccac ctgtggagca tgaagtaaag aaagtgactt taggagatac cttaactcga
     2821 cgttccatta gccagcagaa gtcgggagtt tccattacaa ttgatgaccc agtccggact
     2881 gctcaagtgc cctccccacc ccggggcaag atcagtaaca tcgtccacat ctccaatttg
     2941 gttcgtccct tcactttagg ccagctgaag gaattgttgg gacgtacagg aactctggta
     3001 gaagaggctt tctggattga caagatcaaa tctcactgct ttgtaacgta ctcgacagta
     3061 gaggaagcag ttgccacccg cacagctcta catggggtca aatggcccca gtccaacccc
     3121 aaattcctct gtgctgacta tgctgagcaa gatgagctgg attatcaccg aggcctcttg
     3181 gtggaccgtc cctctgaaac taagacagag gagcaggggg taccacggcc gctgcacccc
     3241 ccgcccccgc ccccagccca gccaccacag caccccaggg cagagcagcg ggagcaggag
     3301 cgggcggtga gggaacagtg ggcagagcgg gaacgggaga tggagcggcg ggagcgaacg
     3361 cgatcagagc gcgaatggga tcgggacaaa gttcgagaag ggccccgttc ccgatcacgg
     3421 tcccgtgacc gccgccgcaa ggaacgcgca aagtctaaag aaaagaagag tgagaagaaa
     3481 gagaaagctc aggaggaacc acctgccaag ctgctggacg accttttccg taagaccaag
     3541 gcggctccct gcatctattg gctcccactg actgacagcc agattgttca gaaggaggca
     3601 gagcgcgctg aacgggccaa ggagcgggag aagcggcgaa aggagcaaga agaagaagag
     3661 cagaaggagc gggagaagga ggcggagcgg gaacggaccc gacagctgga gcgagagaag
     3721 cggcgagagc acagccggga gagggacagg gagagagaga gggacaggga gcgggacagg
     3781 ggagatcgag atcgggagag ggacagggac cgggaacgag gcagggagag ggaccgcaga
     3841 gacaccaagc gccacagcag gagccggagt cggagcacgc ctgtgcggga ccggggtggg
     3901 cgccgctagc cgctagccgg gagaacacta gggagagctg caggcactgg ccaccctgcc
     3961 ccagggggct tcaaggccac agagggatag gtacagtctc caccaccctg gaaccagggg
     4021 tctttcacac catttgccca gtgctgaagt ctggctgcca cctgtcccca cataccaaat
     4081 ggagcagtgg gcatcttccc accctacccc cgtaatctat ctcttgggac ttagccctct
     4141 cctccctctc atttcccatt aagtctgtga gagggaggag ctatgttagg gagggaggtg
     4201 gttggcccag agctggggaa cagccaggag ccccaaacct ctctctcgtt tttcctccat
     4261 cctgctcacc acctcctttg gtacttgcac cccccttttg ggaacagccg gggccaggac
     4321 tgggtcacct atgagctgaa tcagcatctc ctcctgagtc ccagggcccc tgcagttccc
     4381 agtctctttg gtcctgcagc ccatgcctcc tgcccaccgg ttccacttta tatccacctt
     4441 ttccttttgt tcaattttta tttttatttt ttttattatt aaatgatgtg gtctatggaa
     4501 aataataaaa tctgacttag ttttaa
//
LOCUS       XM_032619515            4358 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apoptotic chromatin condensation inducer
            1 (ACIN1), transcript variant X6, mRNA.
ACCESSION   XM_032619515
VERSION     XM_032619515.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4358
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4358
                     /gene="ACIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747393"
     CDS             16..3741
                     /gene="ACIN1"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus isoform X6"
                     /protein_id="XP_032475406.1"
                     /db_xref="GeneID:116747393"
                     /translation="MPEAVGTDPSTSRKMAELEEVTLDGKPLQALRVTDLKAALEQRG
                     LAKSGQKSALVKRLKGALMLENLQKHSTPHAAFQPNSQIGEEMSQNSFIKQYLEKQQE
                     LLRQRLEREAREAAELEGKSASISEEKGESDDEKPRKGERRSSRVRQARAAKLSECSQ
                     AAEEEEDQETPSRNLRLRADRNLKTEEEEEEDEEEEEEEEEEEDDDEGQKSRDAPVLK
                     QFKEEEGEEKPSVKVEEVMDERSQTIRSQEQEGLERGGRVTRSQEEARRSHLARHQQE
                     KEMKTASPLEEEEREIKPSKSLEEKSKSPSPPRLTEDLEKAPVVLQPEQTASEEETPP
                     PLLTKEASSPPPNTQLQSEEEIEPMEGPAPPVLIQLSPPNTDAEARELLLSQHTVQLV
                     GGLSPLSSPADTKVESPVEKVPEESVLPLVQKSTQAESSTQKGLETESEKSAQPLPLK
                     IEEFTLAKGITEESLEQKEGRRASHTLVPSHRSKRSADSSSSRSSSSSSSSSRSRSRS
                     PDSSGSQSHSPPRSKQRNISQAGTHSNPRGRPKMGSRSTSESRSRSRSRSRSASSNSR
                     RSLSPGVSRDSSTSYTETKDPSSGQEVATPPLPQLQVLEPKERTSTSTSIRVRRMSQP
                     EPAEKHVTQRLQPERGSPKKCEAEEAEPPAATQPQTSETPTSHLPESERIHHTVEEKE
                     EVTMDTSENRPENEVPEPPMPIADQVSNDDRPEGSAEDEEKKESSLPKSFKRKISVVS
                     ATKGVPAGNSDTEGGQPSRKRRWGASTATTQKKPSISITTESLKEAVVDLHADDSRIS
                     EDETERNGDDGTHDKGLKICRTVTQVVPSEGQENGQREEEEEEKEPEAEAPVPPQVSV
                     EVALPPPVEHEVKKVTLGDTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIV
                     HISNLVRPFTLGQLKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGV
                     KWPQSNPKFLCADYAEQDELDYHRGLLVDRPSETKTEEQGVPRPLHPPPPPPAQPPQH
                     PRAEQREQERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKER
                     AKSKEKKSEKKEKAQEEPPAKLLDDLFRKTKAAPCIYWLPLTDSQIVQKEAERAERAK
                     EREKRRKEQEEEEQKEREKEAERERTRQLEREKRREHSRERDRERERDRERDRGDRDR
                     ERDRDRERGRERDRRDTKRHSRSRSRSTPVRDRGGRR"
     misc_feature    97..201
                     /gene="ACIN1"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    <109..1095
                     /gene="ACIN1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <874..1365
                     /gene="ACIN1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    2746..3006
                     /gene="ACIN1"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <3331..3423
                     /gene="ACIN1"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:465085"
ORIGIN      
        1 cggaaattac cgaagatgcc cgaagccgtc ggaacggacc cgagtacctc acgcaagatg
       61 gcggagctgg aggaggtgac tctggacggg aagcctcttc aggcgctgcg ggtgaccgac
      121 ctgaaggccg cactggagca gcgaggccta gccaagagcg ggcagaagag tgccctggtc
      181 aagcggctca aaggggctct aatgctagaa aatttacaga aacactcaac accccatgct
      241 gcattccagc caaattccca gattggcgag gaaatgagcc agaacagttt cataaagcag
      301 tatctggaaa agcagcagga gctgcttagg cagcgtctgg aacgtgaagc tcgagaagct
      361 gcagaacttg aaggaaaaag cgcctctatt tccgaagaga aaggtgaatc tgatgatgag
      421 aaaccaagga aaggagaaag acgatcatcc agagtcagac aggcaagagc agctaaactc
      481 tctgagtgca gccaggctgc tgaggaggaa gaggatcaag aaacaccttc cagaaatctg
      541 aggctcagag cagatcgaaa tttgaaaact gaagaggaag aagaagagga tgaggaagag
      601 gaagaagagg aggaagagga ggaagacgat gatgagggac aaaaatctag ggatgcacca
      661 gtcctgaagc agtttaagga agaagagggg gaagagaagc ccagtgtaaa agtagaggag
      721 gtaatggatg agagatccca aactataaga tcccaggaac aggaggggtt agagagagga
      781 gggagggtta caaggtccca ggaagaggcc agaagaagtc atctggccag acatcagcag
      841 gagaaagaga tgaaaacagc ttctcccctt gaggaagaag aaagagaaat aaaaccttca
      901 aaaagcttgg aggaaaaatc caagtcccct tcccctcctc gattgactga agatctggag
      961 aaggcccctg ttgtgctaca accagagcaa actgctagtg aggaggagac tcccccacct
     1021 ttacttacca aggaagcatc ttctccacca cctaatacac aactccagag tgaagaagaa
     1081 atagaaccca tggaaggccc agcccctcct gtccttattc agttgtctcc tcctaataca
     1141 gatgctgagg ccagggagct cttactgtct cagcatactg tgcagttggt gggaggtctg
     1201 tctcctttgt caagccctgc agacaccaaa gtagaatctc cagtagagaa agtgccagag
     1261 gagagtgtcc tgcctctagt tcagaaaagc acacaagctg aatcctcaac ccagaagggt
     1321 cttgaaactg aatcagaaaa atcagctcaa ccactccctc taaaaatcga ggaattcaca
     1381 ctggccaaag ggatcacgga ggaatctttg gaacagaagg aaggcaggag ggcttctcat
     1441 actcttgtcc caagccacag atcgaaacgg tcagctgact catcctctag ccgatcctcc
     1501 tcatcgtcat cctccagttc tagatcaaga tctcgctctc ctgacagctc aggctctcag
     1561 tctcattcac ctccaagatc caagcagaga aatatatctc aggcaggtac tcattccaac
     1621 cctcgtggta gacccaagat gggctccagg tcaacatcag aatccaggtc ccgttcccgt
     1681 tcccgttccc gttcagcgtc aagcaacagc agaagatctc tgagccctgg agtctccagg
     1741 gacagcagca ccagctacac tgaaaccaaa gatccctctt ctggtcagga ggttgcaact
     1801 ccaccattgc cacagcttca ggtccttgag ccaaaggaga ggacttccac ctcaacctct
     1861 atccgagtga ggcgtatgag ccaacctgag ccagctgaaa agcatgtgac ccagaggtta
     1921 cagcctgagc gggggagccc aaagaagtgt gaagctgaag aggcagagcc gccagctgcc
     1981 acacagcccc agacctcaga gactccgacc tcccacctac cagaatcaga aaggattcat
     2041 cacactgttg aggagaagga ggaagtgacc atggacacaa gtgaaaacag acctgaaaat
     2101 gaggttccag agccccccat gcctattgca gaccaagtca gcaatgatga tcgcccagag
     2161 ggcagtgccg aggatgagga gaagaaagag agctcgctgc ccaaatcatt caagaggaag
     2221 atctccgttg tctcagctac caagggggtg ccagctggaa acagtgacac agaggggggc
     2281 cagcctagtc ggaagcggcg ttggggagcc agcacggcca ccacacagaa gaaaccctcc
     2341 atcagtatca ccaccgaatc actcaaggag gctgttgtgg atcttcatgc tgacgactcc
     2401 cgaatctctg aggatgagac agagcgtaat ggtgatgatg ggacccatga caaggggctg
     2461 aaaatatgcc ggaccgtcac tcaggtggtg ccttccgagg gccaggagaa tgggcagagg
     2521 gaagaggagg aagaagagaa ggagcctgaa gcagaagccc ctgtacctcc ccaggtctca
     2581 gtagaggtgg ccttgccccc acctgtggag catgaagtaa agaaagtgac tttaggagat
     2641 accttaactc gacgttccat tagccagcag aagtcgggag tttccattac aattgatgac
     2701 ccagtccgga ctgctcaagt gccctcccca ccccggggca agatcagtaa catcgtccac
     2761 atctccaatt tggttcgtcc cttcacttta ggccagctga aggaattgtt gggacgtaca
     2821 ggaactctgg tagaagaggc tttctggatt gacaagatca aatctcactg ctttgtaacg
     2881 tactcgacag tagaggaagc agttgccacc cgcacagctc tacatggggt caaatggccc
     2941 cagtccaacc ccaaattcct ctgtgctgac tatgctgagc aagatgagct ggattatcac
     3001 cgaggcctct tggtggaccg tccctctgaa actaagacag aggagcaggg ggtaccacgg
     3061 ccgctgcacc ccccgccccc gcccccagcc cagccaccac agcaccccag ggcagagcag
     3121 cgggagcagg agcgggcggt gagggaacag tgggcagagc gggaacggga gatggagcgg
     3181 cgggagcgaa cgcgatcaga gcgcgaatgg gatcgggaca aagttcgaga agggccccgt
     3241 tcccgatcac ggtcccgtga ccgccgccgc aaggaacgcg caaagtctaa agaaaagaag
     3301 agtgagaaga aagagaaagc tcaggaggaa ccacctgcca agctgctgga cgaccttttc
     3361 cgtaagacca aggcggctcc ctgcatctat tggctcccac tgactgacag ccagattgtt
     3421 cagaaggagg cagagcgcgc tgaacgggcc aaggagcggg agaagcggcg aaaggagcaa
     3481 gaagaagaag agcagaagga gcgggagaag gaggcggagc gggaacggac ccgacagctg
     3541 gagcgagaga agcggcgaga gcacagccgg gagagggaca gggagagaga gagggacagg
     3601 gagcgggaca ggggagatcg agatcgggag agggacaggg accgggaacg aggcagggag
     3661 agggaccgca gagacaccaa gcgccacagc aggagccgga gtcggagcac gcctgtgcgg
     3721 gaccggggtg ggcgccgcta gccgctagcc gggagaacac tagggagagc tgcaggcact
     3781 ggccaccctg ccccaggggg cttcaaggcc acagagggat aggtacagtc tccaccaccc
     3841 tggaaccagg ggtctttcac accatttgcc cagtgctgaa gtctggctgc cacctgtccc
     3901 cacataccaa atggagcagt gggcatcttc ccaccctacc cccgtaatct atctcttggg
     3961 acttagccct ctcctccctc tcatttccca ttaagtctgt gagagggagg agctatgtta
     4021 gggagggagg tggttggccc agagctgggg aacagccagg agccccaaac ctctctctcg
     4081 tttttcctcc atcctgctca ccacctcctt tggtacttgc accccccttt tgggaacagc
     4141 cggggccagg actgggtcac ctatgagctg aatcagcatc tcctcctgag tcccagggcc
     4201 cctgcagttc ccagtctctt tggtcctgca gcccatgcct cctgcccacc ggttccactt
     4261 tatatccacc ttttcctttt gttcaatttt tatttttatt ttttttatta ttaaatgatg
     4321 tggtctatgg aaaataataa aatctgactt agttttaa
//
LOCUS       XM_032619524            4189 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apoptotic chromatin condensation inducer
            1 (ACIN1), transcript variant X7, mRNA.
ACCESSION   XM_032619524
VERSION     XM_032619524.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4189
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4189
                     /gene="ACIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747393"
     CDS             16..3234
                     /gene="ACIN1"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus isoform X7"
                     /protein_id="XP_032475415.1"
                     /db_xref="GeneID:116747393"
                     /translation="MPEAVGTDPSTSRKMAELEEVTLDGKPLQALRVTDLKAALEQRG
                     LAKSGQKSALVKRLKGALMLENLQKHSTPHAAFQPNSQIGEEMSQNSFIKQYLEKQQE
                     LLRQRLEREAREAAELEEASAESEDEMIHPEGVASLLPPDFQSSLERPELELSRHSPR
                     KSASISEEKGESDDEKPRKGERRSSRVRQARAAKLSECSQAAEEEEDQETPSRNLRLR
                     ADRNLKTEEEEEEDEEEEEEEEEEEDDDEGQKSRDAPVLKQFKEEEGEEKPSVKVEEV
                     MDERSQTIRSQEQEGLERGGRVTRSQEEARRSHLARHQQEKEMKTASPLEEEEREIKP
                     SKSLEEKSKSPSPPRLTEDLEKAPVVLQPEQTASEEETPPPLLTKEASSPPPNTQLQS
                     EEEIEPMEGPAPPVLIQLSPPNTDAEARELLLSQHTVQLVGGLSPLSSPADTKVESPV
                     EKVPEESVLPLVQKSTQAESSTQKGLETESEKSAQPLPLKIEEFTLAKGITEESLEQK
                     EGRRASHTLVPSHRSKRSADSSSSRSSSSSSSSSRSRSRSPDSSGSQSHSPPRSKQRN
                     ISQAGTHSNPRGRPKMGSRSTSESRSRSRSRSRSASSNSRRSLSPGVSRDSSTSYTET
                     KDPSSGQEVATPPLPQLQVLEPKERTSTSTSIRVRRMSQPEPAEKHVTQRLQPERGSP
                     KKCEAEEAEPPAATQPQTSETPTSHLPESERIHHTVEEKEEVTMDTSENRPENEVPEP
                     PMPIADQVSNDDRPEGSAEDEEKKESSLPKSFKRKISVVSATKGVPAGNSDTEGGQPS
                     RKRRWGASTATTQKKPSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRISEDETER
                     NGDDGTHDKGLKICRTVTQVVPSEGQENGQREEEEEEKEPEAEAPVPPQVSVEVALPP
                     PVEHEVKKVTLGDTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLV
                     RPFTLGQLKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSN
                     PKFLCADYAEQDERKLRRNHLPSCWTTFSVRPRRLPASIGSH"
     misc_feature    97..201
                     /gene="ACIN1"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    <511..1215
                     /gene="ACIN1"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <994..1485
                     /gene="ACIN1"
                     /note="DNA polymerase III subunit gamma/tau; Region:
                     PRK12323; cl46901"
                     /db_xref="CDD:481241"
     misc_feature    2902..3144
                     /gene="ACIN1"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
ORIGIN      
        1 cggaaattac cgaagatgcc cgaagccgtc ggaacggacc cgagtacctc acgcaagatg
       61 gcggagctgg aggaggtgac tctggacggg aagcctcttc aggcgctgcg ggtgaccgac
      121 ctgaaggccg cactggagca gcgaggccta gccaagagcg ggcagaagag tgccctggtc
      181 aagcggctca aaggggctct aatgctagaa aatttacaga aacactcaac accccatgct
      241 gcattccagc caaattccca gattggcgag gaaatgagcc agaacagttt cataaagcag
      301 tatctggaaa agcagcagga gctgcttagg cagcgtctgg aacgtgaagc tcgagaagct
      361 gcagaacttg aagaagcttc agctgagtcg gaggacgaga tgatccatcc cgagggagtg
      421 gcttccctgc tgcctcctga ctttcagagc agcctggaga gaccagagct ggagctcagc
      481 agacattcac ccagaaaaag cgcctctatt tccgaagaga aaggtgaatc tgatgatgag
      541 aaaccaagga aaggagaaag acgatcatcc agagtcagac aggcaagagc agctaaactc
      601 tctgagtgca gccaggctgc tgaggaggaa gaggatcaag aaacaccttc cagaaatctg
      661 aggctcagag cagatcgaaa tttgaaaact gaagaggaag aagaagagga tgaggaagag
      721 gaagaagagg aggaagagga ggaagacgat gatgagggac aaaaatctag ggatgcacca
      781 gtcctgaagc agtttaagga agaagagggg gaagagaagc ccagtgtaaa agtagaggag
      841 gtaatggatg agagatccca aactataaga tcccaggaac aggaggggtt agagagagga
      901 gggagggtta caaggtccca ggaagaggcc agaagaagtc atctggccag acatcagcag
      961 gagaaagaga tgaaaacagc ttctcccctt gaggaagaag aaagagaaat aaaaccttca
     1021 aaaagcttgg aggaaaaatc caagtcccct tcccctcctc gattgactga agatctggag
     1081 aaggcccctg ttgtgctaca accagagcaa actgctagtg aggaggagac tcccccacct
     1141 ttacttacca aggaagcatc ttctccacca cctaatacac aactccagag tgaagaagaa
     1201 atagaaccca tggaaggccc agcccctcct gtccttattc agttgtctcc tcctaataca
     1261 gatgctgagg ccagggagct cttactgtct cagcatactg tgcagttggt gggaggtctg
     1321 tctcctttgt caagccctgc agacaccaaa gtagaatctc cagtagagaa agtgccagag
     1381 gagagtgtcc tgcctctagt tcagaaaagc acacaagctg aatcctcaac ccagaagggt
     1441 cttgaaactg aatcagaaaa atcagctcaa ccactccctc taaaaatcga ggaattcaca
     1501 ctggccaaag ggatcacgga ggaatctttg gaacagaagg aaggcaggag ggcttctcat
     1561 actcttgtcc caagccacag atcgaaacgg tcagctgact catcctctag ccgatcctcc
     1621 tcatcgtcat cctccagttc tagatcaaga tctcgctctc ctgacagctc aggctctcag
     1681 tctcattcac ctccaagatc caagcagaga aatatatctc aggcaggtac tcattccaac
     1741 cctcgtggta gacccaagat gggctccagg tcaacatcag aatccaggtc ccgttcccgt
     1801 tcccgttccc gttcagcgtc aagcaacagc agaagatctc tgagccctgg agtctccagg
     1861 gacagcagca ccagctacac tgaaaccaaa gatccctctt ctggtcagga ggttgcaact
     1921 ccaccattgc cacagcttca ggtccttgag ccaaaggaga ggacttccac ctcaacctct
     1981 atccgagtga ggcgtatgag ccaacctgag ccagctgaaa agcatgtgac ccagaggtta
     2041 cagcctgagc gggggagccc aaagaagtgt gaagctgaag aggcagagcc gccagctgcc
     2101 acacagcccc agacctcaga gactccgacc tcccacctac cagaatcaga aaggattcat
     2161 cacactgttg aggagaagga ggaagtgacc atggacacaa gtgaaaacag acctgaaaat
     2221 gaggttccag agccccccat gcctattgca gaccaagtca gcaatgatga tcgcccagag
     2281 ggcagtgccg aggatgagga gaagaaagag agctcgctgc ccaaatcatt caagaggaag
     2341 atctccgttg tctcagctac caagggggtg ccagctggaa acagtgacac agaggggggc
     2401 cagcctagtc ggaagcggcg ttggggagcc agcacggcca ccacacagaa gaaaccctcc
     2461 atcagtatca ccaccgaatc actcaagagc ctcatccccg acatcaaacc cctggcgggg
     2521 caggaggctg ttgtggatct tcatgctgac gactcccgaa tctctgagga tgagacagag
     2581 cgtaatggtg atgatgggac ccatgacaag gggctgaaaa tatgccggac cgtcactcag
     2641 gtggtgcctt ccgagggcca ggagaatggg cagagggaag aggaggaaga agagaaggag
     2701 cctgaagcag aagcccctgt acctccccag gtctcagtag aggtggcctt gcccccacct
     2761 gtggagcatg aagtaaagaa agtgacttta ggagatacct taactcgacg ttccattagc
     2821 cagcagaagt cgggagtttc cattacaatt gatgacccag tccggactgc tcaagtgccc
     2881 tccccacccc ggggcaagat cagtaacatc gtccacatct ccaatttggt tcgtcccttc
     2941 actttaggcc agctgaagga attgttggga cgtacaggaa ctctggtaga agaggctttc
     3001 tggattgaca agatcaaatc tcactgcttt gtaacgtact cgacagtaga ggaagcagtt
     3061 gccacccgca cagctctaca tggggtcaaa tggccccagt ccaaccccaa attcctctgt
     3121 gctgactatg ctgagcaaga tgagagaaag ctcaggagga accacctgcc aagctgctgg
     3181 acgacctttt ccgtaagacc aaggcggctc cctgcatcta ttggctccca ctgactgaca
     3241 gccagattgt tcagaaggag gcagagcgcg ctgaacgggc caaggagcgg gagaagcggc
     3301 gaaaggagca agaagaagaa gagcagaagg agcgggagaa ggaggcggag cgggaacgga
     3361 cccgacagct ggagcgagag aagcggcgag agcacagccg ggagagggac agggagagag
     3421 agagggacag ggagcgggac aggggagatc gagatcggga gagggacagg gaccgggaac
     3481 gaggcaggga gagggaccgc agagacacca agcgccacag caggagccgg agtcggagca
     3541 cgcctgtgcg ggaccggggt gggcgccgct agccgctagc cgggagaaca ctagggagag
     3601 ctgcaggcac tggccaccct gccccagggg gcttcaaggc cacagaggga taggtacagt
     3661 ctccaccacc ctggaaccag gggtctttca caccatttgc ccagtgctga agtctggctg
     3721 ccacctgtcc ccacatacca aatggagcag tgggcatctt cccaccctac ccccgtaatc
     3781 tatctcttgg gacttagccc tctcctccct ctcatttccc attaagtctg tgagagggag
     3841 gagctatgtt agggagggag gtggttggcc cagagctggg gaacagccag gagccccaaa
     3901 cctctctctc gtttttcctc catcctgctc accacctcct ttggtacttg cacccccctt
     3961 ttgggaacag ccggggccag gactgggtca cctatgagct gaatcagcat ctcctcctga
     4021 gtcccagggc ccctgcagtt cccagtctct ttggtcctgc agcccatgcc tcctgcccac
     4081 cggttccact ttatatccac cttttccttt tgttcaattt ttatttttat tttttttatt
     4141 attaaatgat gtggtctatg gaaaataata aaatctgact tagttttaa
//
LOCUS       XM_032619534            2419 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus apoptotic chromatin condensation inducer
            1 (ACIN1), transcript variant X8, mRNA.
ACCESSION   XM_032619534
VERSION     XM_032619534.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2419
                     /gene="ACIN1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747393"
     CDS             51..1802
                     /gene="ACIN1"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus isoform X8"
                     /protein_id="XP_032475425.1"
                     /db_xref="GeneID:116747393"
                     /translation="MLSESKEGEEKEEVTMDTSENRPENEVPEPPMPIADQVSNDDRP
                     EGSAEDEEKKESSLPKSFKRKISVVSATKGVPAGNSDTEGGQPSRKRRWGASTATTQK
                     KPSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHDKGLKIC
                     RTVTQVVPSEGQENGQREEEEEEKEPEAEAPVPPQVSVEVALPPPVEHEVKKVTLGDT
                     LTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKELLGR
                     TGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYAEQDEL
                     DYHRGLLVDRPSETKTEEQGVPRPLHPPPPPPAQPPQHPRAEQREQERAVREQWAERE
                     REMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSEKKEKAQEEPPA
                     KLLDDLFRKTKAAPCIYWLPLTDSQIVQKEAERAERAKEREKRRKEQEEEEQKEREKE
                     AERERTRQLEREKRREHSRERDRERERDRERDRGDRDRERDRDRERGRERDRRDTKRH
                     SRSRSRSTPVRDRGGRR"
     misc_feature    807..1067
                     /gene="ACIN1"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <1392..1484
                     /gene="ACIN1"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:465085"
ORIGIN      
        1 cgggctgctg gaaagggata aacagcactt ccagggggag aaaaaaaatc atgttatcag
       61 aaagcaaaga aggtgaggag aaggaggaag tgaccatgga cacaagtgaa aacagacctg
      121 aaaatgaggt tccagagccc cccatgccta ttgcagacca agtcagcaat gatgatcgcc
      181 cagagggcag tgccgaggat gaggagaaga aagagagctc gctgcccaaa tcattcaaga
      241 ggaagatctc cgttgtctca gctaccaagg gggtgccagc tggaaacagt gacacagagg
      301 ggggccagcc tagtcggaag cggcgttggg gagccagcac ggccaccaca cagaagaaac
      361 cctccatcag tatcaccacc gaatcactca agagcctcat ccccgacatc aaacccctgg
      421 cggggcagga ggctgttgtg gatcttcatg ctgacgactc ccgaatctct gaggatgaga
      481 cagagcgtaa tggtgatgat gggacccatg acaaggggct gaaaatatgc cggaccgtca
      541 ctcaggtggt gccttccgag ggccaggaga atgggcagag ggaagaggag gaagaagaga
      601 aggagcctga agcagaagcc cctgtacctc cccaggtctc agtagaggtg gccttgcccc
      661 cacctgtgga gcatgaagta aagaaagtga ctttaggaga taccttaact cgacgttcca
      721 ttagccagca gaagtcggga gtttccatta caattgatga cccagtccgg actgctcaag
      781 tgccctcccc accccggggc aagatcagta acatcgtcca catctccaat ttggttcgtc
      841 ccttcacttt aggccagctg aaggaattgt tgggacgtac aggaactctg gtagaagagg
      901 ctttctggat tgacaagatc aaatctcact gctttgtaac gtactcgaca gtagaggaag
      961 cagttgccac ccgcacagct ctacatgggg tcaaatggcc ccagtccaac cccaaattcc
     1021 tctgtgctga ctatgctgag caagatgagc tggattatca ccgaggcctc ttggtggacc
     1081 gtccctctga aactaagaca gaggagcagg gggtaccacg gccgctgcac cccccgcccc
     1141 cgcccccagc ccagccacca cagcacccca gggcagagca gcgggagcag gagcgggcgg
     1201 tgagggaaca gtgggcagag cgggaacggg agatggagcg gcgggagcga acgcgatcag
     1261 agcgcgaatg ggatcgggac aaagttcgag aagggccccg ttcccgatca cggtcccgtg
     1321 accgccgccg caaggaacgc gcaaagtcta aagaaaagaa gagtgagaag aaagagaaag
     1381 ctcaggagga accacctgcc aagctgctgg acgacctttt ccgtaagacc aaggcggctc
     1441 cctgcatcta ttggctccca ctgactgaca gccagattgt tcagaaggag gcagagcgcg
     1501 ctgaacgggc caaggagcgg gagaagcggc gaaaggagca agaagaagaa gagcagaagg
     1561 agcgggagaa ggaggcggag cgggaacgga cccgacagct ggagcgagag aagcggcgag
     1621 agcacagccg ggagagggac agggagagag agagggacag ggagcgggac aggggagatc
     1681 gagatcggga gagggacagg gaccgggaac gaggcaggga gagggaccgc agagacacca
     1741 agcgccacag caggagccgg agtcggagca cgcctgtgcg ggaccggggt gggcgccgct
     1801 agccgctagc cgggagaaca ctagggagag ctgcaggcac tggccaccct gccccagggg
     1861 gcttcaaggc cacagaggga taggtacagt ctccaccacc ctggaaccag gggtctttca
     1921 caccatttgc ccagtgctga agtctggctg ccacctgtcc ccacatacca aatggagcag
     1981 tgggcatctt cccaccctac ccccgtaatc tatctcttgg gacttagccc tctcctccct
     2041 ctcatttccc attaagtctg tgagagggag gagctatgtt agggagggag gtggttggcc
     2101 cagagctggg gaacagccag gagccccaaa cctctctctc gtttttcctc catcctgctc
     2161 accacctcct ttggtacttg cacccccctt ttgggaacag ccggggccag gactgggtca
     2221 cctatgagct gaatcagcat ctcctcctga gtcccagggc ccctgcagtt cccagtctct
     2281 ttggtcctgc agcccatgcc tcctgcccac cggttccact ttatatccac cttttccttt
     2341 tgttcaattt ttatttttat tttttttatt attaaatgat gtggtctatg gaaaataata
     2401 aaatctgact tagttttaa
//
LOCUS       XM_032619549            1668 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 2 C14orf119 homolog
            (C2H14orf119), transcript variant X1, mRNA.
ACCESSION   XM_032619549
VERSION     XM_032619549.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1668
                     /gene="C2H14orf119"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747416"
     CDS             467..934
                     /gene="C2H14orf119"
                     /codon_start=1
                     /product="uncharacterized protein C14orf119 homolog
                     isoform X1"
                     /protein_id="XP_032475440.1"
                     /db_xref="GeneID:116747416"
                     /translation="MSQDSGKVSPFSEMPLGSSSSSMPLPFPSPLPSVPDNISNSSPP
                     PMSYITSQEMKCILHWFASWSGPQREHFLQDLVAKAVPGKLQPLLESLEQLSVSGADR
                     PPCIFECQLRLWDQWFRGWAEQERNEFVRQLEVSEPDFVAKFYQAVAATAGKD"
     misc_feature    617..910
                     /gene="C2H14orf119"
                     /note="Domain of unknown function (DUF4508); Region:
                     DUF4508; pfam14969"
                     /db_xref="CDD:464413"
ORIGIN      
        1 ttattcggct atctccggac ctaaggctga gacgctgtgg cgcttgggtg tttggggctg
       61 gtctgggacc ggaagtgcgt gggcttcccg gctggccctc gttagggttt ttaggaaacc
      121 tggaagcggc ggcgatagtt gaagtctaaa cactcttgtg acggtctccg ggtgccctgt
      181 gagaggaaag gggaggtaag cggggtagaa ctacctccct gggccgggtc agactcggtg
      241 attacgggct acccttagta gggcaagcct cccgctcccc tacggaaaca gctgccgcct
      301 cccatcctcc gaatccccgc cactcccatc taaggctacg ttgctctttg ggaccacaga
      361 ataccaggct ccgtggcctc cgaagtggca agtggcagca ccgtgtcttt cgacccagcc
      421 tgtgaactaa ttcgtggtaa ttgaacttga gcttgccgtg gaagccatgt cgcaagactc
      481 gggaaaagtt agccctttct ccgagatgcc actgggatca tcttcctctt cgatgccgct
      541 acccttccct tctcccttac cctcggtacc agacaatatt tctaactctt cccctccccc
      601 aatgtcttac atcacttccc aggagatgaa gtgtattctt cactggtttg ccagctggtc
      661 aggtcctcag cgtgaacatt tcctacagga cctggtagct aaggcagtac cgggaaaatt
      721 gcagccactg ctggaaagtc tggagcagct tagcgtgtct ggagcagacc gaccaccttg
      781 tatctttgag tgccagctac gtctttggga tcagtggttt cgaggttggg ctgagcagga
      841 gcgcaatgaa tttgtcaggc agctggaggt cagtgagcca gacttcgtgg caaagtttta
      901 ccaagcagtg gctgctaccg ctggtaaaga ctgataggca ttaaaatcaa agaagataac
      961 cagagctaat ggagccgagg ccacaacttt actaagagaa cttcaaatgt atcacttaaa
     1021 ggcctgggga tggtgttcct atcagctgac tgaactcgct gaccaataca ggcctggtga
     1081 tttcaacagc cgatcaactg gagtcctagt gtaaatgttt tccatctaag caaatccaga
     1141 tcagcagtct gtctcctagc ttacttcctt ccaagagatg tcaaaccctc aagaatttaa
     1201 aggcttcttt tacaactata accgaaagga atctacacat tataactcaa gcctactgcc
     1261 ggcccataag ggtataaaat agagcccttc tactccagaa acgagagaag gacaataaaa
     1321 ggtcatgttc ttataattta gctggattca gatggctgct ttcaccactg ttaccaaatt
     1381 ctggcataat tatgtgatat cccaactact agctttccta gtgatgattt agtaaagtta
     1441 tggaaaaatc aggaggtgga gataattagc tactccttcc tccacacaga tgttggtttg
     1501 aatccaagta gcaatgattt ttttctaaag tatacatgac atccttggag ctggtagcag
     1561 atgttcctat tctataagtt tgctttacaa cagtatgaaa acaagtgaca ttctttacag
     1621 gttgaagggt ttattttttg tatcaaaata aagaacagat tttcagaa
//
LOCUS       XM_032619558            1359 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 2 C14orf119 homolog
            (C2H14orf119), transcript variant X2, mRNA.
ACCESSION   XM_032619558
VERSION     XM_032619558.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1359
                     /gene="C2H14orf119"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747416"
     CDS             197..625
                     /gene="C2H14orf119"
                     /codon_start=1
                     /product="uncharacterized protein C14orf119 homolog
                     isoform X2"
                     /protein_id="XP_032475449.1"
                     /db_xref="GeneID:116747416"
                     /translation="MPLGSSSSSMPLPFPSPLPSVPDNISNSSPPPMSYITSQEMKCI
                     LHWFASWSGPQREHFLQDLVAKAVPGKLQPLLESLEQLSVSGADRPPCIFECQLRLWD
                     QWFRGWAEQERNEFVRQLEVSEPDFVAKFYQAVAATAGKD"
     misc_feature    308..601
                     /gene="C2H14orf119"
                     /note="Domain of unknown function (DUF4508); Region:
                     DUF4508; pfam14969"
                     /db_xref="CDD:464413"
ORIGIN      
        1 ttattcggct atctccggac ctaaggctga gacgctgtgg cgcttgggtg tttggggctg
       61 gtctgggacc ggaagtgcgt gggcttcccg gctggccctc gttagggttt ttaggaaacc
      121 tggaagcggc ggcgatagtt gaagtctaaa cactcttgtg acggtctccg ggtgccctgt
      181 gagaggaaag gggaggatgc cactgggatc atcttcctct tcgatgccgc tacccttccc
      241 ttctccctta ccctcggtac cagacaatat ttctaactct tcccctcccc caatgtctta
      301 catcacttcc caggagatga agtgtattct tcactggttt gccagctggt caggtcctca
      361 gcgtgaacat ttcctacagg acctggtagc taaggcagta ccgggaaaat tgcagccact
      421 gctggaaagt ctggagcagc ttagcgtgtc tggagcagac cgaccacctt gtatctttga
      481 gtgccagcta cgtctttggg atcagtggtt tcgaggttgg gctgagcagg agcgcaatga
      541 atttgtcagg cagctggagg tcagtgagcc agacttcgtg gcaaagtttt accaagcagt
      601 ggctgctacc gctggtaaag actgataggc attaaaatca aagaagataa ccagagctaa
      661 tggagccgag gccacaactt tactaagaga acttcaaatg tatcacttaa aggcctgggg
      721 atggtgttcc tatcagctga ctgaactcgc tgaccaatac aggcctggtg atttcaacag
      781 ccgatcaact ggagtcctag tgtaaatgtt ttccatctaa gcaaatccag atcagcagtc
      841 tgtctcctag cttacttcct tccaagagat gtcaaaccct caagaattta aaggcttctt
      901 ttacaactat aaccgaaagg aatctacaca ttataactca agcctactgc cggcccataa
      961 gggtataaaa tagagccctt ctactccaga aacgagagaa ggacaataaa aggtcatgtt
     1021 cttataattt agctggattc agatggctgc tttcaccact gttaccaaat tctggcataa
     1081 ttatgtgata tcccaactac tagctttcct agtgatgatt tagtaaagtt atggaaaaat
     1141 caggaggtgg agataattag ctactccttc ctccacacag atgttggttt gaatccaagt
     1201 agcaatgatt tttttctaaa gtatacatga catccttgga gctggtagca gatgttccta
     1261 ttctataagt ttgctttaca acagtatgaa aacaagtgac attctttaca ggttgaaggg
     1321 tttatttttt gtatcaaaat aaagaacaga ttttcagaa
//
LOCUS       XM_032619567            1525 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 2 C14orf119 homolog
            (C2H14orf119), transcript variant X3, mRNA.
ACCESSION   XM_032619567
VERSION     XM_032619567.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1525
                     /gene="C2H14orf119"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747416"
     CDS             363..791
                     /gene="C2H14orf119"
                     /codon_start=1
                     /product="uncharacterized protein C14orf119 homolog
                     isoform X2"
                     /protein_id="XP_032475458.1"
                     /db_xref="GeneID:116747416"
                     /translation="MPLGSSSSSMPLPFPSPLPSVPDNISNSSPPPMSYITSQEMKCI
                     LHWFASWSGPQREHFLQDLVAKAVPGKLQPLLESLEQLSVSGADRPPCIFECQLRLWD
                     QWFRGWAEQERNEFVRQLEVSEPDFVAKFYQAVAATAGKD"
     misc_feature    474..767
                     /gene="C2H14orf119"
                     /note="Domain of unknown function (DUF4508); Region:
                     DUF4508; pfam14969"
                     /db_xref="CDD:464413"
ORIGIN      
        1 ttattcggct atctccggac ctaaggctga gacgctgtgg cgcttgggtg tttggggctg
       61 gtctgggacc ggaagtgcgt gggcttcccg gctggccctc gttagggttt ttaggaaacc
      121 tggaagcggc ggcgatagtt gaagtctaaa cactcttgtg acggtctccg ggtgccctgt
      181 gagaggaaag gggaggaaat ataagaaaat aatggagtta tgaagttctt ggcatatttc
      241 agaggctaca tgcacattgc ggagaaggct ctttcgtcat acatgatgtt ttccctttct
      301 tttttttcct tctgttgata gctctggaat gattagcatc taggccctga ccagctgctt
      361 ggatgccact gggatcatct tcctcttcga tgccgctacc cttcccttct cccttaccct
      421 cggtaccaga caatatttct aactcttccc ctcccccaat gtcttacatc acttcccagg
      481 agatgaagtg tattcttcac tggtttgcca gctggtcagg tcctcagcgt gaacatttcc
      541 tacaggacct ggtagctaag gcagtaccgg gaaaattgca gccactgctg gaaagtctgg
      601 agcagcttag cgtgtctgga gcagaccgac caccttgtat ctttgagtgc cagctacgtc
      661 tttgggatca gtggtttcga ggttgggctg agcaggagcg caatgaattt gtcaggcagc
      721 tggaggtcag tgagccagac ttcgtggcaa agttttacca agcagtggct gctaccgctg
      781 gtaaagactg ataggcatta aaatcaaaga agataaccag agctaatgga gccgaggcca
      841 caactttact aagagaactt caaatgtatc acttaaaggc ctggggatgg tgttcctatc
      901 agctgactga actcgctgac caatacaggc ctggtgattt caacagccga tcaactggag
      961 tcctagtgta aatgttttcc atctaagcaa atccagatca gcagtctgtc tcctagctta
     1021 cttccttcca agagatgtca aaccctcaag aatttaaagg cttcttttac aactataacc
     1081 gaaaggaatc tacacattat aactcaagcc tactgccggc ccataagggt ataaaataga
     1141 gcccttctac tccagaaacg agagaaggac aataaaaggt catgttctta taatttagct
     1201 ggattcagat ggctgctttc accactgtta ccaaattctg gcataattat gtgatatccc
     1261 aactactagc tttcctagtg atgatttagt aaagttatgg aaaaatcagg aggtggagat
     1321 aattagctac tccttcctcc acacagatgt tggtttgaat ccaagtagca atgatttttt
     1381 tctaaagtat acatgacatc cttggagctg gtagcagatg ttcctattct ataagtttgc
     1441 tttacaacag tatgaaaaca agtgacattc tttacaggtt gaagggttta ttttttgtat
     1501 caaaataaag aacagatttt cagaa
//
LOCUS       XM_032619576            2008 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus riboflavin kinase-like (LOC116747430),
            mRNA.
ACCESSION   XM_032619576
VERSION     XM_032619576.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2008
                     /gene="LOC116747430"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747430"
     CDS             427..1068
                     /gene="LOC116747430"
                     /codon_start=1
                     /product="riboflavin kinase-like"
                     /protein_id="XP_032475467.1"
                     /db_xref="GeneID:116747430"
                     /translation="MSSVPLGPSYACALAPPAGLRSSRPCPPAGPGGPGTASMAAPPD
                     AQSGPQPAPQADGVMRHLPYFCRSQVVRGFGRSSKQLGIPTANFPEQVIDNLPADVST
                     GIYHGWVSVGSGDVHKTVMSTGWNPYYKNTKKSMETRIMHTFKEDFYGELLNVAVVGY
                     LRPEKNFDSLESLISAIQGDIEEAKKRLDLPEHLKLKEDNFFQVPKSKIMNGH"
     misc_feature    <613..1041
                     /gene="LOC116747430"
                     /note="riboflavin kinase; Region: PLN02940"
                     /db_xref="CDD:178528"
ORIGIN      
        1 ggagtagcat tggctacctt accttcttgt tagatgtgag gaacagcaaa tatttaggac
       61 ttataggatc tatctattct ccagcatcaa cgtccacaaa tatccaaccc agatcttcag
      121 aataatatag tactcgttct cttttcatga gaggaaataa caaacacttt ttacatttca
      181 atcctaaaga gattatttct cagtgataaa ccagatgttc accatttcta atagtgaact
      241 cctcggggtc tgattcacca ctgaaacaat tgtttgcttc ttaagtatac tttttaaaca
      301 tatcatttta agactagaag tataggtagg gacttccgag gtcgccggcg ttccggagcc
      361 cagacgcagc ctctgagtct gagcagctga ccgaaaaggt cagctgcgtg agggtctcgc
      421 cggggcatgt cgtccgtgcc gctcggcccg tcgtacgcct gtgcgctcgc cccgccggcc
      481 ggcctgcgga gctcccgccc gtgtccccca gcgggtccgg gaggtcctgg caccgcctcg
      541 atggcggctc cgccggacgc gcagagtgga ccgcagcccg caccccaagc tgacggcgtc
      601 atgaggcacc tgccctactt ctgccgcagc caggtggtgc ggggcttcgg tcgcagctcc
      661 aagcagctgg gcatccctac agctaacttt cctgaacaag taatagataa tcttccagct
      721 gatgtatcca ctggcattta ccatggttgg gtcagtgttg gaagtggaga cgtccataag
      781 acggtgatga gcacaggatg gaacccatac tacaagaata cgaaaaagtc catggaaact
      841 cgtatcatgc atactttcaa agaggacttc tatggggaac ttctcaatgt ggccgtcgtc
      901 ggctacctca gaccagaaaa gaactttgat tctttagagt cacttatttc agcaattcaa
      961 ggtgatattg aggaagctaa gaaacgacta gatttaccag aacatttgaa actcaaagaa
     1021 gacaatttct tccaggttcc taaaagcaaa ataatgaatg gccactgatg gaaaagcatc
     1081 ttatttattc attcactgtt ttctaatatt ttactgctca taactctaca gcctcatcct
     1141 ggttatattt taaaaatcaa acattttcct acagctgtga attaaacagt acaatgtagt
     1201 taccatatta tgttccaact gttcaattaa acccatcatg ttacagtact aaaaaggttc
     1261 attttaaaaa tcaagattct tttttacgta atatgctgat taaaatgtac acttgaaagg
     1321 tcttaagtgt tttttaatgg aaatgaaata tatataaata tgggtaacag gcaattcact
     1381 agtttgagat gagaactata attctcatgg taaaatttta gcatgcatgt actgtgtagc
     1441 atgctctgct aatcagaagg cttatgaaag taactatgtt aagcagaggt ttgacagttt
     1501 attacaaacc taaggggaaa aatccagact tcgtattttt gatattttgt gcatttatat
     1561 attattatag acataaagac ttgtgaaatt tcatttcaat tagtcatttc ctttaagggc
     1621 tcaaatcatt gtactgggtt ccatttttgt tacagctgcc tcagttctaa ttggtctaga
     1681 ctctctatta gtttttttgt ttttctttta aaacagtaaa atgagtgttt ttcgaatctc
     1741 taggtctcat ttttgtgttg tataacactt ccctctttaa gagtagatat tcttcaacat
     1801 ttttcttaac ctttgttttc tgtaaacaac tgtgtgtcag tttttccatt tagaatatcc
     1861 aactctacat ttacaaaatg tagagtttca tctgcgtctg tatctgccat cccatccctt
     1921 cactatatga agagtgatta agtgcatatc tcttgcattt tagaaaaaac acccaaaact
     1981 tcatctgtag gtttcctcaa agtttaaa
//
LOCUS       XM_032619586            1559 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X1, mRNA.
ACCESSION   XM_032619586
VERSION     XM_032619586.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1559
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747437"
     CDS             392..1003
                     /gene="LOC116747437"
                     /codon_start=1
                     /product="5-formyltetrahydrofolate cyclo-ligase isoform
                     X1"
                     /protein_id="XP_032475477.1"
                     /db_xref="GeneID:116747437"
                     /translation="MAAAAVSSAKRSLRAELKRRLRALSAEERLRQSRLLAQKVFTHS
                     QYQKSKRISIFLSMQDEIETEEIIKDIFQQGKTCFIPRYQFQSNHMDMVKLASPEEIS
                     SLPKTSWNIHQPSEVEVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRC
                     LQSQDVRPYTLALAFKEQICLQVPVDENDMKVDEVLYEDFSAS"
     misc_feature    419..985
                     /gene="LOC116747437"
                     /note="5-formyltetrahydrofolate cyclo-ligase family;
                     Region: 5-FTHF_cyc-lig; pfam01812"
                     /db_xref="CDD:396398"
ORIGIN      
        1 ctggaaaaga aaaagaggaa ggcgttatta cagacaaaaa aaagtcatct tccctttagc
       61 taacaggtct gtgtatcatg cagatttctc tattcggcct gcctttgcct tttcaggccc
      121 cagagagccc cagtactaca cgacacgtgg caccgaagga atcctgagtc tttatagaac
      181 tccttccagt agtaccgccg gccccgggag gtcaggcgtg cagatctgtc acgcctgccc
      241 tcgacttgct gggggagggg cgtacattga ccgcgaaggc tccacgtagt tcgggtacca
      301 agggcgggag gcgtggtgcg cccggcgacc cggaagcggg gggccagcgg acccagcggc
      361 ctgcggacgg gactcggatc gcacccgcga gatggcggcg gcggccgtga gcagcgccaa
      421 gcggagcctg cgggccgagc tgaagcggcg tctgcgggcg ctgagcgccg aggagcggct
      481 gcgccagtcc cgcctcttgg cccagaaggt gtttacccat agtcagtatc aaaagtccaa
      541 aagaatctcc atctttctga gcatgcaaga tgaaattgag acagaagaga tcatcaagga
      601 cattttccaa caaggcaaaa cctgctttat cccacggtac cagttccaga gcaatcacat
      661 ggatatggtg aaattagcat cgcctgagga aatctcttca cttcccaaaa catcctggaa
      721 tattcatcag cccagtgagg tcgaggttcg ggaggaggcc ttgtccacag ggggacttga
      781 tctcatcttc atgccgggtc ttgggtttga caaacacggc aaccgtttgg ggcggggcaa
      841 gggctactac gatgcctacc tgaagcgctg tctgcagtcc caggatgtga ggccctacac
      901 cctggccttg gctttcaaag agcagatttg ccttcaggtc cccgtggatg aaaatgacat
      961 gaaggtagat gaagtacttt acgaagactt ctcagcatct taaatcctga tgaccacagc
     1021 caaataatca aggttttgtg ccagagaaaa gccaaacatg tgtattttcc cttgtcagaa
     1081 attagtggaa attgcacaac aatgtgaata agggccgtag tgttttcagt gtagttgtca
     1141 gataccgaac atgaaaccat tttaaaaact cgatagcagt gtgtgtaata gaacattgat
     1201 taaaacggag gctatcacca tatgattttc agcttaactt tctgctatta atgtcccagg
     1261 ttgatctttc tgttttatag tttaagttaa atatttatga ggcactatgc tccaactcag
     1321 agtgtgaggg gaaaataaac tcatctgtag tggacacttt cattaagtcc tgtcatgggc
     1381 ctgggtcagt ctggcacaca tatggagatt cagcaattat taaatgattt attggtgttt
     1441 gctttgtgta caaagttctc caggaatatt ataccctttc atcatggctt cacttactca
     1501 acctgaaatt ttatgtctga cagtttgtag cttttgatgg ttaaaggact gaaaccttt
//
LOCUS       XR_004348041            6102 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X2, misc_RNA.
ACCESSION   XR_004348041
VERSION     XR_004348041.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6102
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6102
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747437"
     misc_RNA        1..6102
                     /gene="LOC116747437"
                     /product="5-formyltetrahydrofolate cyclo-ligase,
                     transcript variant X2"
                     /db_xref="GeneID:116747437"
ORIGIN      
        1 ctggaaaaga aaaagaggaa ggcgttatta cagacaaaaa aaagtcatct tccctttagc
       61 taacaggtct gtgtatcatg cagatttctc tattcggcct gcctttgcct tttcaggccc
      121 cagagagccc cagtactaca cgacacgtgg caccgaagga atcctgagtc tttatagaac
      181 tccttccagt agtaccgccg gccccgggag gtcaggcgtg cagatctgtc acgcctgccc
      241 tcgacttgct gggggagggg cgtacattga ccgcgaaggc tccacgtagt tcgggtacca
      301 agggcgggag gcgtggtgcg cccggcgacc cggaagcggg gggccagcgg acccagcggc
      361 ctgcggacgg gactcggatc gcacccgcga gatggcggcg gcggccgtga gcagcgccaa
      421 gcggagcctg cgggccgagc tgaagcggcg tctgcgggcg ctgagcgccg aggagcggct
      481 gcgccagtcc cgcctcttgg cccagaaggt gtttacccat agtcagtatc aaaagtccaa
      541 aagaatctcc atctttctga gcatgcaaga tgaaattgag acagaagaga tcatcaagga
      601 cattttccaa caaggcaaaa cctgctttat cccacggtac cagttccaga gcaatcacat
      661 ggatatggtg aaattagcat cgcctgagga aatctcttca cttcccaaaa catcctggaa
      721 tattcatcag cccagtgagg tcgaggttcg ggaggaggcc ttgtccacag gttctctgct
      781 ttccagcact acaagtgaac ctgtagagat gagagtctgc caggttgacc cagttgaaag
      841 ttgtaacagc tggaggaatc tctgttcgtc tactcagacc agacctgggc tcccactcat
      901 gagaaacatg ggaaaatgga tcacagagaa attaaccaga tattccagtg ttgcagagct
      961 gtgtgtgttg gagtgaagaa tggacacaca ttcggttgtc ttcttcatca agttgtgatt
     1021 tggaaagtct atctcaatga tgctgtagat ggatgcctct cctggacata cacctagaat
     1081 ttggattgtg cctggtggaa aaaggaaaaa cggccaagag ctcccttttg caggatggcg
     1141 ccgtttacgt ccatttgttt ctggagggat gcatggtacg ccacagcaga gccatgagtt
     1201 gaggaggaag agcatgagaa atttgaagga agcacggaat aaaggtttac aggacatcag
     1261 cactaatgcc cgaatactag tccaacgcca ggttaaagcc aaggaaaatc gggcgtgttt
     1321 attgatgttt atggagttct gcaatgagtg ctctgaagaa cagaactctg ccttagaaat
     1381 gtttgccagg cagcggagtt caaggttttc tatcacagtt ttactggcct catgaaacga
     1441 gttggcattc tttggacccg ggcttggaat ttcctttctg taagtcttcc atttcttttg
     1501 gttcagtttg ggtgaattgt gtttttctaa gaattttttc tttttaaatt tttaaattat
     1561 gaccacaaga ttctgcaaat aacttttaca actttttaat gtttgttaga tcttttgtga
     1621 tatcctctct tttattcctg atattgacct gtgccttctc tcttttattt cttgattagc
     1681 ttttatttgg gagtaagggg tgtattcgtt atgtcttgct gcgtaacaaa ttaccctaag
     1741 tctcagtagc ttcaaactag aagcatttat tatctcacac aacttgtgtg agggggtggg
     1801 tcctggggat gacttagctg gctgtcctgc tcagagtctc cctcgaggtt gcagtcaagg
     1861 tgccgtctga gattgcactc atctgcgaat ggacctgaag ggtctccttc cccgttagct
     1921 aagtcacatg cttggcgtgt cagtgctggt tgttggcagg tggttcggat tcctcaaggc
     1981 ctctgttctt caccatgtga atctctctct agggctgctg gagtgtcttc acaacatagc
     2041 aggtggcctc ccccagagac agggatccaa gtgacagcaa agtcttgaaa tcacacatca
     2101 tcagttccac ttactcctct cattgcaaga gagttacgag gtacagccca cacggaaaag
     2161 agagcaggat tagggtccac ttttgagaag attgtcagag aatttgtgga catatttaaa
     2221 agcccctata gaaagatatc aattttatta acgttttcaa agaaccatta ttttgctttg
     2281 ctgattctct tacagatttc gtcctctatt tcattaattc ctattgtttg ctgtttcctc
     2341 ctctccatat ttcaccagcg taaccaagtc cctgcagtaa attaattcca tgggatgctg
     2401 atacaggtct gatactcctt tgaatgtttg gaaaaaacaa aacaaatcaa ttatacgccc
     2461 ctcatctctc acttacacgc gcgcgcacac acacacacac acacacacac atacacacac
     2521 attttgttga tttgttggca gattcaggag gtttatgaac cgtggttctt acattggtag
     2581 aatgtgagtt ttaagatgca tttttttcca aagggataac ttacggtgtt gagtcagcca
     2641 cactcactca ctcatattgc ctcccgttaa caccaaaagc tcagacttct gctccagctg
     2701 gcctacccca gggagccagc ctgtggtcct ggaaccagag tcctctcatt ccatacgaga
     2761 accagaggca cgaccttggc aaatgaggct gccatgtcaa acgtttgggc tggacacctc
     2821 agatgttgcc agatattgag cattttgccc tgaatgctac tagcaaaata ttcctataaa
     2881 acgaacattt tccaaggtca gtctgtgtct ttaggggctc agtgcttgga cttcagccat
     2941 gaggctcccc tgaccaattt gaaagtgtag ctttttgctc tgtgttggaa taaatgttca
     3001 ccttgctata aaacatcggt tctctttcgg gtctaagtaa tttcctttcc cttctgcttg
     3061 cctatctttg aggtgttaag agcacgcgtg gccagaagag tggtcttctg cccagtctgg
     3121 aagcttggcc agaggaactg gtgttcttgt gtaatgagat catctttcaa aagtaccaga
     3181 cggtttttcg tccttctcac ccaaacgcga cgtttcctgg cagccattcc accaccaaag
     3241 tgccaggaaa ggggactaca aatgcctcct aaaagtacag gatagggggt gtctctatca
     3301 gggaagaagg aaggggaaag cccacccctt ctggcctcaa aaaaactgcg ggaggaagga
     3361 ggctgtcaga agcaggtgag taagtaggga aagaggtgtg ttctgaccct ctcccagctg
     3421 aagtgaggaa cctcccagct aagcctccag aggcttcctc agctcctggg gctggggcgg
     3481 gagggtgagg acagtgtcca ctttttcctg gtccccctag aagatcacag ggattgatgg
     3541 tgttggctga ggtttactgg gggagacagg tgttgctgca ttgtggtgag ggacgctgta
     3601 gctgcgggcc agatggcaga tcatcccgac caagaactgg ccatgcagca cagctagacc
     3661 tcaggggaca cgcagtccta gagaggattg acttggactc tagatagcag gactgctgag
     3721 cccagacaga accaaggagg gcaggcttca gcctctggtg ccagcagggc tcctgtccat
     3781 caggtggaca gcggcatcct catacagact acaggagccg gaagggaccg tgggcctgtg
     3841 gcccgtgtgg atccgagatc tttctcgtca cctttaggtc acacagacca gctctctcgt
     3901 atcaacacct ccagatgcac tcttggagat aagcaaggtg aaaagggatt aaaaagtaca
     3961 aaacgtttat ccaaaagaag ctgagttctc taaagaggct gttttacatt attagatcag
     4021 attgaatttc cttacatcaa tcgtggaaaa tgaagaagtt atgttttctt tgcaaatcgg
     4081 agtgccactg gtaaatttgc aaccctgata cgaattgatg cacaaagatg agaattttag
     4141 ctgctagaag caaggccacg gtgtggggct ggtctgagct gagctgttct tgtgtccttc
     4201 cgcatgggaa tcggtgtcag aatgaggggg acaagactgc atctgtggag agccgctttt
     4261 ctttggtggg aaaaataatt agcctggagg tagctttcgt ccagttctgc cccagtccga
     4321 ttattatgaa gggaatgagt catctcatca agaacacacc agggacttct ctggcggtcc
     4381 agtggttaag actctgcctt ccagtgcagg gggtgtgggt tcaatccctg gtcggggagc
     4441 tgagatccca catgcctcgc agccaaaaat accaaagcat agaacagaaa caatattgta
     4501 acaaattcaa taaagacttt aaaaatggtc cacatccaaa aaaaaaaaaa aaagtcttaa
     4561 aaaagaaaag aacaccccag ttcctttctt aggaccttcc tccctccaca gggcttggaa
     4621 cttggaagga gatggttcaa tttcaagctc tggctctgac tgggtgggca agtcgataga
     4681 ctttcctgag cttctgtcta tcaaatgggg attgagacat gtgtacccct aatccttgtg
     4741 gcttcagaaa gagctgatgg agggtaacag aaagtgcttt ttataaaccg aaaagtccta
     4801 atcccgtgcc cattccaagc ttccagatgt cttccttttc ctgcagtttc ctttttgcct
     4861 cctgcgtgtt ccaggctttt cctccgggct ctgttctggc cttcggctga ccagaggttt
     4921 gttcctttgt atcaggtccc gtgctgggtc ctggagctct tgaggccaat agatccaaca
     4981 tctcccctcg aggaacttct tgtccactct caggcactgt ccttccttct cctgccaggc
     5041 gattttccct tcggatgtta ctggttatga attctccttg gtagaatggg cttgaaggtg
     5101 ggattctgta actagagtag gcccttcagg aaatgggtcc aacgtgtgag atatatgact
     5161 cgtcaatttt tcagtaagta taatgcccta gaccaggctc atttggagtg gaatctggag
     5221 ggcagtgccc tggatcttag gatgtgaata gcgggcttgg gtggctcacc tgggtcagca
     5281 ggtgctgagt tggatggcga gggcagctta ccctcttctg tcccaggggt cagacttttt
     5341 atcacccaca ggcttgcctg tcgctaccta gcttcgagcc cttccaccca gacttgtttt
     5401 catgttggca tcctcaacag atacggagag acctatttgg ttggaaaccc agaaaaattc
     5461 tttcattcac tctcctagca caccctttcc tgaagaccta gatttcacag ggggcacaaa
     5521 actaggacca agtcagagag ggaggcaacc tggaaatagg gtatagactc agggaactgt
     5581 tgatgctgca gcctgagccc acaaggcagt ctggaggcag aattctctct tctttggggg
     5641 agtccatctt ttttctcttg aggccttcaa ctgatcagac aagccccccc cccccccata
     5701 ttatggaggc taatgtgttc tactcaaagt ccactgattt aaatgttaat ctcatcttaa
     5761 aaaatgcatt cacagcagtg tctgaatcag tgtttgggca aatatctgga aatggtgacc
     5821 aagccaagtt gacacataga attaaccatc acgtaagttc aaagaggcat ggcgtgggcc
     5881 agcgtggtaa gcctgggtct ctaacacata aggaaggtgt taataatgga catcaatggg
     5941 aagccaccct tccccctatc actgcatcat gaagattcaa ggaaaggaaa gtaccttttg
     6001 gagcataact tcaaagcctg gctttacaga acattctgga aaagatctag aaaaccgaag
     6061 cctaagatga gcttcctgtt cccacacttg gatgaaaatt ac
//
LOCUS       XR_004348042            3967 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X3, misc_RNA.
ACCESSION   XR_004348042
VERSION     XR_004348042.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3967
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3967
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747437"
     misc_RNA        1..3967
                     /gene="LOC116747437"
                     /product="5-formyltetrahydrofolate cyclo-ligase,
                     transcript variant X3"
                     /db_xref="GeneID:116747437"
ORIGIN      
        1 ctggaaaaga aaaagaggaa ggcgttatta cagacaaaaa aaagtcatct tccctttagc
       61 taacaggtct gtgtatcatg cagatttctc tattcggcct gcctttgcct tttcaggccc
      121 cagagagccc cagtactaca cgacacgtgg caccgaagga atcctgagtc tttatagaac
      181 tccttccagt agtaccgccg gccccgggag gtcaggcgtg cagatctgtc acgcctgccc
      241 tcgacttgct gggggagggg cgtacattga ccgcgaaggc tccacgtagt tcgggtacca
      301 agggcgggag gcgtggtgcg cccggcgacc cggaagcggg gggccagcgg acccagcggc
      361 ctgcggacgg gactcggatc gcacccgcga gatggcggcg gcggccgtga gcagcgccaa
      421 gcggagcctg cgggccgagc tgaagcggcg tctgcgggcg ctgagcgccg aggagcggct
      481 gcgccagtcc cgcctcttgg cccagaaggt gtttacccat agtcagtatc aaaagtccaa
      541 aagaatctcc atctttctga gcatgcaaga tgaaattgag acagaagaga tcatcaagga
      601 cattttccaa caaggcaaaa cctgctttat cccacggtac cagttccaga gcaatcacat
      661 ggatatggtg aaattagcat cgcctgagga aatctcttca cttcccaaaa catcctggaa
      721 tattcatcag cccagtgagg tcgaggttcg ggaggaggcc ttgtccacag gttctctgct
      781 ttccagcact acaagtgaac ctgtagagat gagagtctgc caggttgacc cagttgaaag
      841 ttgtaacagc tggaggaatc tctgttcgtc tactcagacc agacctgggc tcccactcat
      901 gagaaacatg ggaaaatgga tcacagagaa attaaccaga tattccagtg ttgcagagct
      961 gtgtgtgttg gagtgaagaa tggacacaca ttcggttgtc ttcttcatca agttgtgatt
     1021 tggaaagtct atctcaatga tgctgtagat ggatgcctct cctggacata cacctagaat
     1081 ttggattgtg cctggtggaa aaaggaaaaa cggccaagag ctcccttttg caggatggcg
     1141 ccgtttacgt ccatttgttt ctggagggat gcatggtacg ccacagcaga gccatgagtt
     1201 gaggaggaag agcatgagaa atttgaagga agcacggaat aaaggtttac aggacatcag
     1261 cactaatgcc cgaatactag tccaacgcca ggttaaagcc aaggaaaatc gggcgtgttt
     1321 attgatgttt atggagttct gcaatgagtg ctctgaagaa cagaactctg ccttagaaat
     1381 gtttgccagg cagcggagtt caaggttttc tatcacagtt ttactggcct catgaaacga
     1441 gttggcattc tttggacccg ggcttggaat ttcctttctg taagtcttcc atttcttttg
     1501 gttcagtttg ggtgaattgt gtttttctaa gaattttttc tttttaaatt tttaaattat
     1561 gaccacaaga ttctgcaaat aacttttaca actttttaat gtttgttaga tcttttgtga
     1621 tatcctctct tttattcctg atattgacct gtgccttctc tcttttattt cttgattagc
     1681 ttttatttgg gagtaagggg tgtattcgtt atgtcttgct gcgtaacaaa ttaccctaag
     1741 tctcagtagc ttcaaactag aagcatttat tatctcacac aacttgtgtg agggggtggg
     1801 tcctggggat gacttagctg gctgtcctgc tcagagtctc cctcgaggtt gcagtcaagg
     1861 tgccgtctga gattgcactc atctgcgaat ggacctgaag ggtctccttc cccgttagct
     1921 aagtcacatg cttggcgtgt cagtgctggt tgttggcagg tggttcggat tcctcaaggc
     1981 ctctgttctt caccatgtga atctctctct agggctgctg gagtgtcttc acaacatagc
     2041 aggtggcctc ccccagagac agggatccaa gtgacagcaa agtcttgaaa tcacacatca
     2101 tcagttccac ttactcctct cattgcaaga gagttacgag gtacagccca cacggaaaag
     2161 agagcaggat tagggtccac ttttgagaag attgtcagag aatttgtgga catatttaaa
     2221 agcccctata gaaagatatc aattttatta acgttttcaa agaaccatta ttttgctttg
     2281 ctgattctct tacagatttc gtcctctatt tcattaattc ctattgtttg ctgtttcctc
     2341 ctctccatat ttcaccagcg taaccaagtc cctgcagtaa attaattcca tgggatgctg
     2401 atacaggtct gatactcctt tgaatgtttg gaaaaaacaa aacaaatcaa ttatacgccc
     2461 ctcatctctc acttacacgc gcgcgcacac acacacacac acacacacac atacacacac
     2521 attttgttga tttgttggca gattcaggag gtttatgaac cgtggttctt acattggtag
     2581 aatgtgagtt ttaagatgca tttttttcca aagggataac ttacggtgtt gagtcagcca
     2641 cactcactca ctcatattgc ctcccgttaa caccaaaagc tcagacttct gctccagctg
     2701 gcctacccca gggagccagc ctgtggtcct ggaaccagag tcctctcatt ccatacgaga
     2761 accagaggca cgaccttggc aaatgaggct gccatgtcaa acgtttgggc tggacacctc
     2821 agatgttgcc agatattgag cattttgccc tgaatgctac tagcaaaata ttcctataaa
     2881 acgaacattt tccaaggtca gtctgtgtct ttaggggctc agtgcttgga cttcagccat
     2941 gaggctcccc tgaccaattt gaaagtgtag ctttttgctc tgtgttggaa taaatgttca
     3001 ccttgctata aaacatcggt tctctttcgg gtctaagtaa tttcctttcc cttctgcttg
     3061 cctatctttg aggtgttaag agcacgcgtg gccagaagag tggtcttctg cccagtctgg
     3121 aagcttggcc agaggaactg gtgttcttgt gtaatgagat catctttcaa aagtaccaga
     3181 cggtttttcg tccttctcac ccaaacgcga cgtttcctgg cagccattcc accaccaaag
     3241 tgccaggaaa ggggactaca aatgcctcct aaaagtacag gatagggggt gtctctatca
     3301 gggaagaagg aaggggaaag cccacccctt ctggcctcaa aaaaactgcg ggaggaagga
     3361 ggctgtcaga agcaggtgat ttggaggaac aaacggggca acaggaaatc ccaggatgcc
     3421 ccgactcccc tggcctcttc cagacgtgac atctccgaag tgccgtaact ctaccatttt
     3481 ctgatcagga cactaacttt agctttaaaa agaagatgaa ccggccaagt tgactgctgc
     3541 agtttggcaa ggtatatgat tgtttgatcc tcagctgcct cagatttctg gtgctgtccg
     3601 taaaaggcct tgtttcacag agtcacatac tttaggctat tctctatcaa tttttagaat
     3661 ggctatcttg gactggagtt tgtatctctc gtcttgtacc ataaagtcta aagaagtaac
     3721 tgaaacatgc taaaatccta tgaaattact cttgaatcaa gtcccaagag caaataggca
     3781 acagtttcac taattatgtc actatttcat ggaaaagatt gccaccttcc cagacaagga
     3841 taggaaggtg agcatgttac cgaccagagt tcttgacctc ctcaattaat agaaattgat
     3901 cagaggccag aaaagaaatt cagacaaggc tttattggga cccctgctgc agcagagggg
     3961 agcgaga
//
LOCUS       XR_004348044            3555 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X4, misc_RNA.
ACCESSION   XR_004348044
VERSION     XR_004348044.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3555
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3555
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747437"
     misc_RNA        1..3555
                     /gene="LOC116747437"
                     /product="5-formyltetrahydrofolate cyclo-ligase,
                     transcript variant X4"
                     /db_xref="GeneID:116747437"
ORIGIN      
        1 ctggaaaaga aaaagaggaa ggcgttatta cagacaaaaa aaagtcatct tccctttagc
       61 taacaggtct gtgtatcatg cagatttctc tattcggcct gcctttgcct tttcaggccc
      121 cagagagccc cagtactaca cgacacgtgg caccgaagga atcctgagtc tttatagaac
      181 tccttccagt agtaccgccg gccccgggag gtcaggcgtg cagatctgtc acgcctgccc
      241 tcgacttgct gggggagggg cgtacattga ccgcgaaggc tccacgtagt tcgggtacca
      301 agggcgggag gcgtggtgcg cccggcgacc cggaagcggg gggccagcgg acccagcggc
      361 ctgcggacgg gactcggatc gcacccgcga gatggcggcg gcggccgtga gcagcgccaa
      421 gcggagcctg cgggccgagc tgaagcggcg tctgcgggcg ctgagcgccg aggagcggct
      481 gcgccagtcc cgcctcttgg cccagaaggt gtttacccat agtcagtatc aaaagtccaa
      541 aagaatctcc atctttctga gcatgcaaga tgaaattgag acagaagaga tcatcaagga
      601 cattttccaa caaggcaaaa cctgctttat cccacggtac cagttccaga gcaatcacat
      661 ggatatggtg aaattagcat cgcctgagga aatctcttca cttcccaaaa catcctggaa
      721 tattcatcag cccagtgagg tcgaggttcg ggaggaggcc ttgtccacag gttctctgct
      781 ttccagcact acaagtgaac ctgtagagat gagagtctgc caggttgacc cagttgaaag
      841 ttgtaacagc tggaggaatc tctgttcgtc tactcagacc agacctgggc tcccactcat
      901 gagaaacatg ggaaaatgga tcacagagaa attaaccaga tattccagtg ttgcagagct
      961 gtgtgtgttg gagtgaagaa tggacacaca ttcggttgtc ttcttcatca agttgtgatt
     1021 tggaaagtct atctcaatga tgctgtagat ggatgcctct cctggacata cacctagaat
     1081 ttggattgtg cctggtggaa aaaggaaaaa cggccaagag ctcccttttg caggatggcg
     1141 ccgtttacgt ccatttgttt ctggagggat gcatggtacg ccacagcaga gccatgagtt
     1201 gaggaggaag agcatgagaa atttgaagga agcacggaat aaaggtttac aggacatcag
     1261 cactaatgcc cgaatactag tccaacgcca ggttaaagcc aaggaaaatc gggcgtgttt
     1321 attgatgttt atggagttct gcaatgagtg ctctgaagaa cagaactctg ccttagaaat
     1381 gtttgccagg cagcggagtt caaggttttc tatcacagtt ttactggcct catgaaacga
     1441 gttggcattc tttggacccg ggcttggaat ttcctttctg taagtcttcc atttcttttg
     1501 gttcagtttg ggtgaattgt gtttttctaa gaattttttc tttttaaatt tttaaattat
     1561 gaccacaaga ttctgcaaat aacttttaca actttttaat gtttgttaga tcttttgtga
     1621 tatcctctct tttattcctg atattgacct gtgccttctc tcttttattt cttgattagc
     1681 ttttatttgg gagtaagggg tgtattcgtt atgtcttgct gcgtaacaaa ttaccctaag
     1741 tctcagtagc ttcaaactag aagcatttat tatctcacac aacttgtgtg agggggtggg
     1801 tcctggggat gacttagctg gctgtcctgc tcagagtctc cctcgaggtt gcagtcaagg
     1861 tgccgtctga gattgcactc atctgcgaat ggacctgaag ggtctccttc cccgttagct
     1921 aagtcacatg cttggcgtgt cagtgctggt tgttggcagg tggttcggat tcctcaaggc
     1981 ctctgttctt caccatgtga atctctctct agggctgctg gagtgtcttc acaacatagc
     2041 aggtggcctc ccccagagac agggatccaa gtgacagcaa agtcttgaaa tcacacatca
     2101 tcagttccac ttactcctct cattgcaaga gagttacgag gtacagccca cacggaaaag
     2161 agagcaggat tagggtccac ttttgagaag attgtcagag aatttgtgga catatttaaa
     2221 agcccctata gaaagatatc aattttatta acgttttcaa agaaccatta ttttgctttg
     2281 ctgattctct tacagatttc gtcctctatt tcattaattc ctattgtttg ctgtttcctc
     2341 ctctccatat ttcaccagcg taaccaagtc cctgcagtaa attaattcca tgggatgctg
     2401 atacaggtct gatactcctt tgaatgtttg gaaaaaacaa aacaaatcaa ttatacgccc
     2461 ctcatctctc acttacacgc gcgcgcacac acacacacac acacacacac atacacacac
     2521 attttgttga tttgttggca gattcaggag gtttatgaac cgtggttctt acattggtag
     2581 aatgtgagtt ttaagatgca tttttttcca aagggataac ttacggtgtt gagtcagcca
     2641 cactcactca ctcatattgc ctcccgttaa caccaaaagc tcagacttct gctccagctg
     2701 gcctacccca gggagccagc ctgtggtcct ggaaccagag tcctctcatt ccatacgaga
     2761 accagaggca cgaccttggc aaatgaggct gccatgtcaa acgtttgggc tggacacctc
     2821 agatgttgcc agatattgag cattttgccc tgaatgctac tagcaaaata ttcctataaa
     2881 acgaacattt tccaaggtca gtctgtgtct ttaggggctc agtgcttgga cttcagccat
     2941 gaggctcccc tgaccaattt gaaagtgtag ctttttgctc tgtgttggaa taaatgttca
     3001 ccttgctata aaacatcggt tctctttcgg gtctaagtaa tttcctttcc cttctgcttg
     3061 cctatctttg aggtgttaag agcacgcgtg gccagaagag tggtcttctg cccagtctgg
     3121 aagcttggcc agaggaactg gtgttcttgt gtaatgagat catctttcaa aagtaccaga
     3181 cggtttttcg tccttctcac ccaaacgcga cgtttcctgg cagccattcc accaccaaag
     3241 tgccaggaaa ggggactaca aatgcctcct aaaagtacag gatagggggt gtctctatca
     3301 gggaagaagg aaggggaaag cccacccctt ctggcctcaa aaaaactgcg ggaggaagga
     3361 ggctgtcaga agcagcaggg caacagcgag aggacacagc agcccccaga aggagagccc
     3421 tctgtcttgc cagcctggtc caccctacac caggcgtgaa gctgacccat ccctggagcc
     3481 agaggggtcc gagtaactcg tgcatcagtc ttttgagaaa gagttcatca gagaagatga
     3541 acgtgtaccc cagga
//
LOCUS       XR_004348045            3528 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X5, misc_RNA.
ACCESSION   XR_004348045
VERSION     XR_004348045.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3528
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747437"
     misc_RNA        1..3528
                     /gene="LOC116747437"
                     /product="5-formyltetrahydrofolate cyclo-ligase,
                     transcript variant X5"
                     /db_xref="GeneID:116747437"
ORIGIN      
        1 ctggaaaaga aaaagaggaa ggcgttatta cagacaaaaa aaagtcatct tccctttagc
       61 taacaggtct gtgtatcatg cagatttctc tattcggcct gcctttgcct tttcaggccc
      121 cagagagccc cagtactaca cgacacgtgg caccgaagga atcctgagtc tttatagaac
      181 tccttccagt agtaccgccg gccccgggag gtcaggcgtg cagatctgtc acgcctgccc
      241 tcgacttgct gggggagggg cgtacattga ccgcgaaggc tccacgtagt tcgggtacca
      301 agggcgggag gcgtggtgcg cccggcgacc cggaagcggg gggccagcgg acccagcggc
      361 ctgcggacgg gactcggatc gcacccgcga gatggcggcg gcggccgtga gcagcgccaa
      421 gcggagcctg cgggccgagc tgaagcggcg tctgcgggcg ctgagcgccg aggagcggct
      481 gcgccagtcc cgcctcttgg cccagaaggt gtttacccat agtcagtatc aaaagtccaa
      541 aagaatctcc atctttctga gcatgcaaga tgaaattgag acagaagaga tcatcaagga
      601 cattttccaa caaggcaaaa cctgctttat cccacggtac cagttccaga gcaatcacat
      661 ggatatggtg aaattagcat cgcctgagga aatctcttca cttcccaaaa catcctggaa
      721 tattcatcag cccagtgagg tcgaggttcg ggaggaggcc ttgtccacag gttctctgct
      781 ttccagcact acaagtgaac ctgtagagat gagagtctgc caggttgacc cagttgaaag
      841 ttgtaacagc tggaggaatc tctgttcgtc tactcagacc agacctgggc tcccactcat
      901 gagaaacatg ggaaaatgga tcacagagaa attaaccaga tattccagtg ttgcagagct
      961 gtgtgtgttg gagtgaagaa tggacacaca ttcggttgtc ttcttcatca agttgtgatt
     1021 tggaaagtct atctcaatga tgctgtagat ggatgcctct cctggacata cacctagaat
     1081 ttggattgtg cctggtggaa aaaggaaaaa cggccaagag ctcccttttg caggatggcg
     1141 ccgtttacgt ccatttgttt ctggagggat gcatggtacg ccacagcaga gccatgagtt
     1201 gaggaggaag agcatgagaa atttgaagga agcacggaat aaaggtttac aggacatcag
     1261 cactaatgcc cgaatactag tccaacgcca ggttaaagcc aaggaaaatc gggcgtgttt
     1321 attgatgttt atggagttct gcaatgagtg ctctgaagaa cagaactctg ccttagaaat
     1381 gtttgccagg cagcggagtt caaggttttc tatcacagtt ttactggcct catgaaacga
     1441 gttggcattc tttggacccg ggcttggaat ttcctttctg taagtcttcc atttcttttg
     1501 gttcagtttg ggtgaattgt gtttttctaa gaattttttc tttttaaatt tttaaattat
     1561 gaccacaaga ttctgcaaat aacttttaca actttttaat gtttgttaga tcttttgtga
     1621 tatcctctct tttattcctg atattgacct gtgccttctc tcttttattt cttgattagc
     1681 ttttatttgg gagtaagggg tgtattcgtt atgtcttgct gcgtaacaaa ttaccctaag
     1741 tctcagtagc ttcaaactag aagcatttat tatctcacac aacttgtgtg agggggtggg
     1801 tcctggggat gacttagctg gctgtcctgc tcagagtctc cctcgaggtt gcagtcaagg
     1861 tgccgtctga gattgcactc atctgcgaat ggacctgaag ggtctccttc cccgttagct
     1921 aagtcacatg cttggcgtgt cagtgctggt tgttggcagg tggttcggat tcctcaaggc
     1981 ctctgttctt caccatgtga atctctctct agggctgctg gagtgtcttc acaacatagc
     2041 aggtggcctc ccccagagac agggatccaa gtgacagcaa agtcttgaaa tcacacatca
     2101 tcagttccac ttactcctct cattgcaaga gagttacgag gtacagccca cacggaaaag
     2161 agagcaggat tagggtccac ttttgagaag attgtcagag aatttgtgga catatttaaa
     2221 agcccctata gaaagatatc aattttatta acgttttcaa agaaccatta ttttgctttg
     2281 ctgattctct tacagatttc gtcctctatt tcattaattc ctattgtttg ctgtttcctc
     2341 ctctccatat ttcaccagcg taaccaagtc cctgcagtaa attaattcca tgggatgctg
     2401 atacaggtct gatactcctt tgaatgtttg gaaaaaacaa aacaaatcaa ttatacgccc
     2461 ctcatctctc acttacacgc gcgcgcacac acacacacac acacacacac atacacacac
     2521 attttgttga tttgttggca gattcaggag gtttatgaac cgtggttctt acattggtag
     2581 aatgtgagtt ttaagatgca tttttttcca aagggataac ttacggtgtt gagtcagcca
     2641 cactcactca ctcatattgc ctcccgttaa caccaaaagc tcagacttct gctccagctg
     2701 gcctacccca gggagccagc ctgtggtcct ggaaccagag tcctctcatt ccatacgaga
     2761 accagaggca cgaccttggc aaatgaggct gccatgtcaa acgtttgggc tggacacctc
     2821 agatgttgcc agatattgag cattttgccc tgaatgctac tagcaaaata ttcctataaa
     2881 acgaacattt tccaaggtca gtctgtgtct ttaggggctc agtgcttgga cttcagccat
     2941 gaggctcccc tgaccaattt gaaagtgtag ctttttgctc tgtgttggaa taaatgttca
     3001 ccttgctata aaacatcggt tctctttcgg gtctaagtaa tttcctttcc cttctgcttg
     3061 cctatctttg aggtgttaag agcacgcgtg gccagaagag tggtcttctg cccagtctgg
     3121 aagcttggcc agaggaactg gtgttcttgt gtaatgagat catctttcaa aagtaccaga
     3181 cggtttttcg tccttctcac ccaaacgcga cgtttcctgg cagccattcc accaccaaag
     3241 tgccaggaaa ggggactaca aatgcctcct aaaagtacag gatagggggt gtctctatca
     3301 gggaagaagg aaggggaaag cccacccctt ctggcctcaa aaaaactgcg ggaggaagga
     3361 ggctgtcaga agcaggctca cagtctttgg ggattatccc ttcttcgact cattttcttt
     3421 cttttttttt ttttaagatt tttttgatgt ggaccatttt taaagtcttt attgagtttg
     3481 ttacactact gcttctgttt tatgttttgg gtttttttgg ccgtgagg
//
LOCUS       XR_004348046            5784 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X6, misc_RNA.
ACCESSION   XR_004348046
VERSION     XR_004348046.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5784
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5784
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116747437"
     misc_RNA        1..5784
                     /gene="LOC116747437"
                     /product="5-formyltetrahydrofolate cyclo-ligase,
                     transcript variant X6"
                     /db_xref="GeneID:116747437"
ORIGIN      
        1 ctggaaaaga aaaagaggaa ggcgttatta cagacaaaaa aaagtcatct tccctttagc
       61 taacaggtct gtgtatcatg cagatttctc tattcggcct gcctttgcct tttcaggccc
      121 cagagagccc cagtactaca cgacacgtgg caccgaagga atcctgagtc tttatagaac
      181 tccttccagt agtaccgccg gccccgggag gtcaggcgtg cagatctgtc acgcctgccc
      241 tcgacttgct gggggagggg cgtacattga ccgcgaaggc tccacgtagt tcgggtacca
      301 agggcgggag gcgtggtgcg cccggcgacc cggaagcggg gggccagcgg acccagcggc
      361 ctgcggacgg gactcggatc gcacccgcga gatggcggcg gcggccgtga gcagcgccaa
      421 gcggagcctg cgggccgagc tgaagcggcg tctgcgggcg ctgagcgccg aggagcggct
      481 gcgccagtcc cgcctcttgg cccagaaggt gtttacccat agtcagtatc aaaagtccaa
      541 aagaatctcc atctttctga gcatgcaaga tgaaattgag acagaagaga tcatcaagga
      601 cattttccaa caaggcaaaa cctgctttat cccacggtac cagttccaga gcaatcacat
      661 ggatatggtg aaattagcat cgcctgagga aatctcttca cttcccaaaa catcctggaa
      721 tattcatcag cccagtgagg tcgaggttcg ggaggaggcc ttgtccacag gttctctgct
      781 ttccagcact acaagtgaac ctgtagagat gagagtctgc cagaatggac acacattcgg
      841 ttgtcttctt catcaagttg tgatttggaa agtctatctc aatgatgctg tagatggatg
      901 cctctcctgg acatacacct agaatttgga ttgtgcctgg tggaaaaagg aaaaacggcc
      961 aagagctccc ttttgcagga tggcgccgtt tacgtccatt tgtttctgga gggatgcatg
     1021 gtacgccaca gcagagccat gagttgaggt tttctatcac agttttactg gcctcatgaa
     1081 acgagttggc attctttgga cccgggcttg gaatttcctt tctggctgct ggagtgtctt
     1141 cacaacatag caggtggcct cccccagaga cagggatcca agtgacagca aagtcttgaa
     1201 atcacacatc atcagttcca cttactcctc tcattgcaag agagttacga ggtacagccc
     1261 acacggaaaa gagagcagga ttagggtcca cttttgagaa gattgtcaga gaatttgtgg
     1321 acatatttaa aagcccctat agaaagatat caattttatt aacgttttca aagaaccatt
     1381 attttgcttt gctgattctc ttacagattt cgtcctctat ttcattaatt cctattgttt
     1441 gctgtttcct cctctccata tttcaccagc gtaaccaagt ccctgcagta aattaattcc
     1501 atgggatgct gatacaggtc tgatactcct ttgaatgttt ggaaaaaaca aaacaaatca
     1561 attatacgcc cctcatctct cacttacacg cgcgcgcaca cacacacaca cacacacaca
     1621 catacacaca cattttgttg atttgttggc agattcagga ggtttatgaa ccgtggttct
     1681 tacattggta gaatgtgagt tttaagatgc atttttttcc aaagggataa cttacggtgt
     1741 tgagtcagcc acactcactc actcatattg cctcccgtta acaccaaaag ctcagacttc
     1801 tgctccagct ggcctacccc agggagccag cctgtggtcc tggaaccaga gtcctctcat
     1861 tccatacgag aaccagaggc acgaccttgg caaatgaggc tgccatgtca aacgtttggg
     1921 ctggacacct cagatgttgc cagatattga gcattttgcc ctgaatgcta ctagcaaaat
     1981 attcctataa aacgaacatt ttccaaggtc agtctgtgtc tttaggggct cagtgcttgg
     2041 acttcagcca tgaggctccc ctgaccaatt tgaaagtgta gctttttgct ctgtgttgga
     2101 ataaatgttc accttgctat aaaacatcgg ttctctttcg ggtctaagta atttcctttc
     2161 ccttctgctt gcctatcttt gaggtgttaa gagcacgcgt ggccagaaga gtggtcttct
     2221 gcccagtctg gaagcttggc cagaggaact ggtgttcttg tgtaatgaga tcatctttca
     2281 aaagtaccag acggtttttc gtccttctca cccaaacgcg acgtttcctg gcagccattc
     2341 caccaccaaa gtgccaggaa aggggactac aaatgcctcc taaaagtaca ggataggggg
     2401 tgtctctatc agggaagaag gaaggggaaa gcccacccct tctggcctca aaaaaactgc
     2461 gggaggaagg aggctgtcag aagcagggct gctgagccca gcatttgtcc ctgggactca
     2521 aatgccgaca gactgtacag tgagaatctt caagagtgtg tgaagccagg cacgcatgtg
     2581 gttagtcaga agaaatggtt gctggaaatg ctggtcctca gaatgacatc tgctgggtgg
     2641 cctctcagag ggtgggagct gcttccctcc caagtcaggc tctgcctaag cgaggcttag
     2701 tgatggaagc tactgtttat tacccaccaa ctctgcacca gaccctgtgt agcgtgcctt
     2761 acccagaccc cctcctcagc acagcgtgtg gcaagaagtg agcatcctgg tccctattga
     2821 cagatgagaa gaatgaggct gaacaaggtc caaggacgtt ccaaggtcac acggagggta
     2881 aatggcagag cctagacctg aatatgggtc taggtgacac actgcctgtt acaagtgcag
     2941 gcgaagaata aagacagaga caggtacatt ctgcccccac ccaccccacc cttgggtgcc
     3001 cgagctggca cagagcaaga cagtcatggc tctggaactt tttctcccaa gggctccagg
     3061 ggctcgagag agacagggca ctgcctgtcc ccagccacca cagcaagggt cccagggaaa
     3121 aaccatgtct gtggcaggga atagtcaagt ggacagatga ctttgcctcc aagctggacc
     3181 gttgtttagg gacaggattg tgctcctagg gaacaccggc catcccaggt gctgtggact
     3241 gaattgcgtc tcctccaaag atgctgaagt cctaacccca gtacctgtca atgtgacttt
     3301 tatttggaaa caaggtcttt gtagatgatc cagtaaagac gaggtcatca gggtggaccc
     3361 taatccagta tggcttgtgt tcttatgaaa agaaggaagt tggacacaga gacaaacaca
     3421 cacagggaga gaactctgtg tgaacatgag agtggagatt ggggtgatga ttctacaagc
     3481 cgaggagccc caacgattgt caacaaacca gaaaaagcta gaggagaggc atggaacaga
     3541 ttctccatga caacccttga aaggaaccaa cactgccaag accttgattt ggggctttta
     3601 gcctccagaa ctgggataca atacattcct gttgtttaag ccacccagtc tgtggtactt
     3661 tgttatgaca gccctaggac actgatacac cagagctcct gagatgtgtg tcctgcattc
     3721 agccctgtag tcaggcctgg actgagaaac tccagggagc cctggtgcca tcgcctgact
     3781 tgaaaggacc cagcattgct gtctggtgcc aagagaggcc agatggtgca cagccatcat
     3841 ccaggactgg atccctgctg tgttaagtaa gcactgtagc tcatcttcca agtggtgggg
     3901 tccctggtta caaagaacca gatggaaatc caattgcact ctcaaggctg ttacagggga
     3961 agatggtgtt tgtgtcctgt gctattccag ggataattag catcagaaga ttagattcat
     4021 aatgccccat tcattttctc cgctcgtcac tggtgtctgg tggagaattg gaattcttaa
     4081 tcccgcacgc tctaagtgaa tgcatattga acagttttga cagcttggaa atttcattgc
     4141 aggtacttga tgacttccca tgtcaggatc aatttgcagc cttgtttttt cagctgatta
     4201 ggtcccatcc aattttcttg agccagggtt tcagagaatc cggcttcttc catctctacc
     4261 atgaagggat gcagggtggt gatggtccca gggaggctag gtttgagatc tgatatccag
     4321 aatcactgaa tctaccagga ctcctcttat gtttgctcaa ggaaaaaaca gtgaactctc
     4381 tactaaagaa aattacacaa tgcagctttg gcccagagat tctgggagaa gtcagcaaga
     4441 acatacacag agcttctagc ttggactaca cagaggacag aggatgaaga ataaaggatt
     4501 gagagcgtgg gcgtggctcc tgggcacacc ccagctctac catttcactc tctataggac
     4561 cttgggccaa ttacttgcac tttcctaagt ttcctcatca ataacgtggg gatcgttgta
     4621 atagaaacct tatacggctg ttgtgaagat gaaatgaaat attacatgta aaagttctct
     4681 gcttggtgcc tgcagcatag taagtgttca gtgaatgtta actttgaagc aaagttcctc
     4741 acggaaaaaa gacaattcct cttccttcgc cttcctctcc cccctcctgc atctcctcct
     4801 ttttccctgt tctctatcct cagtcaaaga aagtctacag cacggtccag cagaaatgca
     4861 gggagagcca catgtgtcgt tttgttttct agtaactatg ttaaaaaggt acaaaaagaa
     4921 aaaaacaaac tggaagatgc agagaacaga ttgttggctg tcagaggtca ggagtcgggg
     4981 ggaggtgtga actgggtaaa gggggtcaga aggtacaaac tttcagttat aaaataagtc
     5041 ctggggatgc aatgtacagc atgtgactat agttaatgat actgtattgc ctatttgaaa
     5101 gttgtttcag agaatagatc ttgaaagttc ttatcacaag aagaaaatta tgactatgta
     5161 tggtgacgga tgttaattag acttattgcg atgatcattt cataatacat ggaaatattg
     5221 aatcattatg tagcatacct aaaaccaaca taacgctata tgttaattat acctcaataa
     5281 aaaaacagaa tttggaaaaa atggtacaaa gaaacaggtg aaattaattt taataacata
     5341 ttttatataa agcaatatag tatagatcat gtaatcagtg taaacattat taacgggata
     5401 ctttatattg tatttctcct actgtgtctt cacaagccag tgcgtatgct atgctaacag
     5461 cacatctcac tccggactgg ccacgtttca agtgttcaat gagccacgtg gggctactgg
     5521 ttgggatact gggcagtaca gctctagacg tgctggagct tgttgattcc cctagaaatt
     5581 ttccacttgt ccccattatc tcaatctcct ggccttcttg tgctggggtg acaaggacac
     5641 atcatgactc tcaggtgagt caggagcttc cctcggaagc agtagccaag gcaggaaatt
     5701 ctgttcccac tgcagacact gccacctggt tttaggtgct cagtgagaca acttagccct
     5761 tgatagtctg gggatcaaga gatg
//
LOCUS       XM_032619618            1052 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X7, mRNA.
ACCESSION   XM_032619618
VERSION     XM_032619618.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1052
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:116747437"
     CDS             392..913
                     /gene="LOC116747437"
                     /codon_start=1
                     /product="5-formyltetrahydrofolate cyclo-ligase isoform
                     X2"
                     /protein_id="XP_032475509.1"
                     /db_xref="GeneID:116747437"
                     /translation="MAAAAVSSAKRSLRAELKRRLRALSAEERLRQSRLLAQKVFTHS
                     QYQKSKRISIFLSMQDEIETEEIIKDIFQQGKTCFIPRYQFQSNHMDMVKLASPEEIS
                     SLPKTSWNIHQPSEVEVREEALSTEAGFWMRVRCCVGWSEQGDLISSSCRVLGLTNTA
                     TVWGGARATTMPT"
     misc_feature    419..>769
                     /gene="LOC116747437"
                     /note="5-formyltetrahydrofolate cyclo-ligase family;
                     Region: 5-FTHF_cyc-lig; cl00360"
                     /db_xref="CDD:444864"
ORIGIN      
        1 ctggaaaaga aaaagaggaa ggcgttatta cagacaaaaa aaagtcatct tccctttagc
       61 taacaggtct gtgtatcatg cagatttctc tattcggcct gcctttgcct tttcaggccc
      121 cagagagccc cagtactaca cgacacgtgg caccgaagga atcctgagtc tttatagaac
      181 tccttccagt agtaccgccg gccccgggag gtcaggcgtg cagatctgtc acgcctgccc
      241 tcgacttgct gggggagggg cgtacattga ccgcgaaggc tccacgtagt tcgggtacca
      301 agggcgggag gcgtggtgcg cccggcgacc cggaagcggg gggccagcgg acccagcggc
      361 ctgcggacgg gactcggatc gcacccgcga gatggcggcg gcggccgtga gcagcgccaa
      421 gcggagcctg cgggccgagc tgaagcggcg tctgcgggcg ctgagcgccg aggagcggct
      481 gcgccagtcc cgcctcttgg cccagaaggt gtttacccat agtcagtatc aaaagtccaa
      541 aagaatctcc atctttctga gcatgcaaga tgaaattgag acagaagaga tcatcaagga
      601 cattttccaa caaggcaaaa cctgctttat cccacggtac cagttccaga gcaatcacat
      661 ggatatggtg aaattagcat cgcctgagga aatctcttca cttcccaaaa catcctggaa
      721 tattcatcag cccagtgagg tcgaggttcg ggaggaggcc ttgtccacag aagctggatt
      781 ttggatgaga gttagatgct gcgtaggatg gtctgaacag ggggacttga tctcatcttc
      841 atgccgggtc ttgggtttga caaacacggc aaccgtttgg ggcggggcaa gggctactac
      901 gatgcctacc tgaagcgctg tctgcagtcc caggatgtga ggccctacac cctggccttg
      961 gctttcaaag agcagatttg ccttcaggtc cccgtggatg aaaatgacat gaaggtagat
     1021 gaagtacttt acgaagactt ctcagcatct ta
//
LOCUS       XR_004348050            1110 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X8, misc_RNA.
ACCESSION   XR_004348050
VERSION     XR_004348050.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1110
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747437"
     misc_RNA        1..1110
                     /gene="LOC116747437"
                     /product="5-formyltetrahydrofolate cyclo-ligase,
                     transcript variant X8"
                     /db_xref="GeneID:116747437"
ORIGIN      
        1 ctggaaaaga aaaagaggaa ggcgttatta cagacaaaaa aaagtcatct tccctttagc
       61 taacaggtct gtgtatcatg cagatttctc tattcggcct gcctttgcct tttcaggccc
      121 cagagagccc cagtactaca cgacacgtgg caccgaagga atcctgagtc tttatagaac
      181 tccttccagt agtaccgccg gccccgggag gtcaggcgtg cagatctgtc acgcctgccc
      241 tcgacttgct gggggagggg cgtacattga ccgcgaaggc tccacgtagt tcgggtacca
      301 agggcgggag gcgtggtgcg cccggcgacc cggaagcggg gggccagcgg acccagcggc
      361 ctgcggacgg gactcggatc gcacccgcga gatggcggcg gcggccgtga gcagcgccaa
      421 gcggagcctg cgggccgagc tgaagcggcg tctgcgggcg ctgagcgccg aggagcggct
      481 gcgccagtcc cgcctcttgg cccagaaggt gtttacccat agtcagtatc aaaagtccaa
      541 aagaatctcc atctttctga gcatgcaaga tgaaattgag acagaagaga tcatcaagga
      601 cattttccaa caaggcaaaa cctgctttat cccacggtac cagttccaga gcaatcacat
      661 ggatatggtg aaattagcat cgcctgagga aatctcttca cttcccaaaa catcctggaa
      721 tattcatcag cccagtgagg tcgaggttcg ggaggaggcc ttgtccacag gttctctgct
      781 ttccagcact acaagtgaac ctgtagagat gagagtctgc caggttgacc cagttgaaag
      841 ttgtaacagc tggaggaatc tctgttcgtc tactcagacc agacctgggc tcccactctg
      901 accagggatt gtgccaccta gaaaactgcc cacggcccgc gtgatatatg aagtgttccg
      961 gctcttgttg cctcatgggc tgcccgctac ttctgcttta ttgacagcaa acttccagaa
     1021 aagaaccctg tgatgagaaa catgggaaaa tggatcacag agaaattaac cagatattcc
     1081 agtgttgcag agctgtgtgt gttggagtga
//
LOCUS       XM_032619633            1284 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus 5-formyltetrahydrofolate cyclo-ligase
            (LOC116747437), transcript variant X9, mRNA.
ACCESSION   XM_032619633
VERSION     XM_032619633.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1284
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1284
                     /gene="LOC116747437"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747437"
     CDS             288..728
                     /gene="LOC116747437"
                     /codon_start=1
                     /product="5-formyltetrahydrofolate cyclo-ligase isoform
                     X3"
                     /protein_id="XP_032475524.1"
                     /db_xref="GeneID:116747437"
                     /translation="MQDEIETEEIIKDIFQQGKTCFIPRYQFQSNHMDMVKLASPEEI
                     SSLPKTSWNIHQPSEVEVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKR
                     CLQSQDVRPYTLALAFKEQICLQVPVDENDMKVDEVLYEDFSAS"
     misc_feature    <288..710
                     /gene="LOC116747437"
                     /note="5-formyltetrahydrofolate cyclo-ligase family;
                     Region: 5-FTHF_cyc-lig; pfam01812"
                     /db_xref="CDD:396398"
ORIGIN      
        1 accgttcatg ccggacccgg cagcctccag gcctgcggat ctgcgcaggc gcaagcctca
       61 ggcgcgcgca cgtccgcccg gcgcgcgcac gtcctctgag ggcgcgcagt gttcccctca
      121 gcgcgcgaaa gtcctgttgt gggtgttgga acgctgttgg gctcagtgtt cgcgccgtgg
      181 agagttatgg ggtttgtgag ggagaggatg gaagtgggtg acagactgct gaggtgttta
      241 cccatagtca gtatcaaaag tccaaaagaa tctccatctt tctgagcatg caagatgaaa
      301 ttgagacaga agagatcatc aaggacattt tccaacaagg caaaacctgc tttatcccac
      361 ggtaccagtt ccagagcaat cacatggata tggtgaaatt agcatcgcct gaggaaatct
      421 cttcacttcc caaaacatcc tggaatattc atcagcccag tgaggtcgag gttcgggagg
      481 aggccttgtc cacaggggga cttgatctca tcttcatgcc gggtcttggg tttgacaaac
      541 acggcaaccg tttggggcgg ggcaagggct actacgatgc ctacctgaag cgctgtctgc
      601 agtcccagga tgtgaggccc tacaccctgg ccttggcttt caaagagcag atttgccttc
      661 aggtccccgt ggatgaaaat gacatgaagg tagatgaagt actttacgaa gacttctcag
      721 catcttaaat cctgatgacc acagccaaat aatcaaggtt ttgtgccaga gaaaagccaa
      781 acatgtgtat tttcccttgt cagaaattag tggaaattgc acaacaatgt gaataagggc
      841 cgtagtgttt tcagtgtagt tgtcagatac cgaacatgaa accattttaa aaactcgata
      901 gcagtgtgtg taatagaaca ttgattaaaa cggaggctat caccatatga ttttcagctt
      961 aactttctgc tattaatgtc ccaggttgat ctttctgttt tatagtttaa gttaaatatt
     1021 tatgaggcac tatgctccaa ctcagagtgt gaggggaaaa taaactcatc tgtagtggac
     1081 actttcatta agtcctgtca tgggcctggg tcagtctggc acacatatgg agattcagca
     1141 attattaaat gatttattgg tgtttgcttt gtgtacaaag ttctccagga atattatacc
     1201 ctttcatcat ggcttcactt actcaacctg aaattttatg tctgacagtt tgtagctttt
     1261 gatggttaaa ggactgaaac cttt
//
LOCUS       XM_032619646            2146 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BCL2 related protein A1 (BCL2A1), mRNA.
ACCESSION   XM_032619646
VERSION     XM_032619646.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-489               VOSU01000015.1     33110285-33110773   c
            490-490             "N"                1-1
            491-651             VOSU01000015.1     33110124-33110284   c
            652-2146            VOSU01000015.1     33100145-33101639   c
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2146
                     /gene="BCL2A1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116747450"
     CDS             232..759
                     /gene="BCL2A1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: bcl-2-related protein A1"
                     /protein_id="XP_032475537.1"
                     /db_xref="GeneID:116747450"
                     /translation="MTDSEFGYIHMLAQDYLKYVLQIPQPGSGPSKTSRVLQDVAFSV
                     QNEVEKNLKPCLDNIDVVSIDTARTIFNQVMEREFEDGIVNWXRIVTIFAFEGILIKK
                     LLGGRIAPDVDTYKEISYFVAEFITKNTGEWIRQNGGWENGFVKKFEPKSGWLTFLEV
                     TGKICEILCLLKQYY"
     misc_feature    265..669
                     /gene="BCL2A1"
                     /note="Apoptosis regulator proteins of the Bcl-2 family,
                     named after B-cell lymphoma 2. This alignment model spans
                     what have been described as Bcl-2 homology regions BH1,
                     BH2, BH3, and BH4. Many members of this family have an
                     additional C-terminal transmembrane...; Region:
                     Bcl-2_like; cd06845"
                     /db_xref="CDD:132900"
     misc_feature    340..366
                     /gene="BCL2A1"
                     /note="BH3 [active]"
                     /db_xref="CDD:132900"
     misc_feature    order(349..354,358..363,373..375,382..387,436..441,
                     448..453,460..465,484..486,490..495,499..504,514..516,
                     526..528)
                     /gene="BCL2A1"
                     /note="BH3-homology region binding site [active]"
                     /db_xref="CDD:132900"
     misc_feature    order(460..468,481..519)
                     /gene="BCL2A1"
                     /note="BH1 [active]"
                     /db_xref="CDD:132900"
     misc_feature    order(625..654,658..669)
                     /gene="BCL2A1"
                     /note="BH2 [active]"
                     /db_xref="CDD:132900"
ORIGIN      
        1 ctctctttga aacattttct tctttcacat gttaaacttt ctctttcaca cagagccgac
       61 gtatgaaagt gacaaggagg aaggatacta tcaagtgatg caaacagaaa ttccaccagc
      121 ctccagatac catgtgtcat attacgccaa gctgcgtgag tttgtgcttc agactgcctt
      181 gggcacttcc aggtgaacaa gctcaagact ttgctctcct gcaggaagaa gatgaccgac
      241 agcgaatttg gctatattca catgctggcc caggactacc tgaagtacgt cttgcagata
      301 ccgcaacctg gatctggtcc aagcaaaaca tccagggtgt tacaagacgt tgctttctca
      361 gtccaaaacg aagttgaaaa gaatttgaaa ccatgcttgg acaatattga tgttgtgtcc
      421 atagacaccg ccagaacaat attcaaccaa gtgatggaaa gggaatttga agatggcatc
      481 gttaactggn gaaggattgt gaccatattt gcatttgaag gcattctcat caagaaactt
      541 ctaggagggc gaattgcccc agatgtggac acttacaagg agatttctta ctttgttgca
      601 gagttcataa ccaaaaacac aggagaatgg ataaggcaga atggaggctg ggaaaatggc
      661 tttgtaaaga agtttgaacc caagtctggc tggctgactt ttctggaagt tacaggaaag
      721 atctgtgaaa tattatgtct cctgaagcag tactattgac caaaaaggac actccatatt
      781 gtgaaatctg cattattttc ttgaatcgta caagaagcac ttgccaacac ttacttctac
      841 ttctaaacaa ataactttga tgatataact tgacattcca gagttatggg aattttgtcc
      901 ccattttaat gaataaattg tatgtatttg tttctatacg taatttgtgt cctgcctgtg
      961 gttccaacaa aagggtaaag ctcaatacag ggtacagaga ttgaattaag agaatgatga
     1021 ccaggaaggt gatgtctttg gcagattttc ttaagggtgt gtccattacc ccaaaatcat
     1081 tttcggtgtc accagtctag actgatgatg ggtgaggtct gcttcccatg tacctctggg
     1141 ctccaagctt tctggagtcc ccagtgcccc tagatgctta cgtagggttt tccaccaatg
     1201 ccctctccgc cacactttag ggttgccatg taaagttgat gaatatggca accagatatg
     1261 gagaagactc cgggatagtc tgaacaaaga caggtaaacg attcaacgtt gggccactgt
     1321 taaactctct atttaaaaat ttcacaaagt agaaaattat gtcacttatt agcccctgtg
     1381 ttctgatttt taggtcagca aatctggttg cgatatggga gcacggtacc ttgttctcga
     1441 ctttcccact cttccttttc ctccctcaat acaacatctg ccccactggg gcttgctttt
     1501 cctttcctag gaagttgttg attgatccaa taaagaaacc agagccttcc ctccccagca
     1561 acccccttca ggctatgggc attttcacag gggctttcag gtaattcatg ctttacctct
     1621 catagtgatt cttaacggtg gggattagga ctttggggca agtcagcagg gaaatatttt
     1681 tgacaaaagt agctttggtt acttatcaaa tcacatcgga gaggcaacta cctaggccac
     1741 ctgggcttgt gtctgcagga ggcagggagc attttcttct tcctccttca gccaagtgcc
     1801 tcccctcccc cttctgaaat gagttccgtt ttaattcatt tttgcattaa tcagagctaa
     1861 gtggtgggaa tgaatagtca tgaacggaca taaacaggaa gcatgtgtaa gggtactgct
     1921 acctggaata cacttgcaca agaaaccaca aaccctggct tttacactgc catgatctat
     1981 ttaacaaagt gacactggga tatcactgac cgtttctggc ttggttggcg acctggtctt
     2041 tcaaagtgca gctcactgtg tgttctgttt agcactttgc ttaaaagaaa aaagactttt
     2101 atgaacctca actcctacct caagccaaac acaaaaatga aagtga
//
LOCUS       XR_004348057            1548 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747453
            (LOC116747453), ncRNA.
ACCESSION   XR_004348057
VERSION     XR_004348057.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1548
                     /gene="LOC116747453"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116747453"
     ncRNA           1..1548
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747453"
                     /product="uncharacterized LOC116747453"
                     /db_xref="GeneID:116747453"
ORIGIN      
        1 gctggtttac tgccgatggg cgggacagat gcttgatgaa gcaagtgatt tttttttact
       61 atcagcatgt ctcttctgtt cacctctgga gaactcagga ctgaaaggca tgtgacctgg
      121 attgggagga gagaggatag tagctcgagg gaataacgag gcgtggagaa aggctcagta
      181 atctgatgaa aaggcatgca tctttaatct ggagccaatg acaagcacat atgaatgact
      241 gtggacagga caagagatca gttgattttt ttggagattt ttccaggacg gtagaaagtc
      301 agaagttggt gcttccttct tgatgaagtt gtaaaatgcc tcctcatctt cctctcttcc
      361 tatgggccac ctgactccac tagcacaggc atgggattgt accctttccc tggaagtaag
      421 tcattcaagt gtaggttcat tcatttgagc agatttgtaa acatcagtat gcaaagaaga
      481 tactggtttg ccatgctggt ctgtactgat tcaaaaaagc actgcccgtc ttgcacagat
      541 tcagtgtctc ctatgagctg ggaaaggaat attgaggttg ctttgaaatg acatcttaaa
      601 gggcatttct attctgtcta agctgttaaa gtgtaaaagt caagagctta aaacctacat
      661 aaggacttgg tgaaggctga tgtgtgtggg ggagcgcaca tgtgtgttta tatcctgcca
      721 tactcactca cacttatacc tgtaccaccc ccaaaagatg agtacacttc tagactttct
      781 cagagacaat tccacaccct ccactaatta tgagttccag gagcttacaa aatttattgt
      841 taagaaggta aaattttcaa taacatttat tcattttctg ggtgttccaa atacagtgca
      901 aacccatgca gagcttgtaa actagtatgc tcatacgtgg gcctctgtgc taacaaactc
      961 ctgccttcac ttgaaaccta cacagcgtaa tagctgaaat ttccacccat ccttcagtat
     1021 agctttccac agcaaccaga aaaaaacacg accaaatatc tcacatgctt tgtctagccc
     1081 caagtcaggc tgagttccag gaagaaaagg tgatggagaa aggggagtgg ctgcagtaag
     1141 ccccaacgtt atgcaggaag acctcaacaa aatgcaaaaa acatcaagta aaagatttca
     1201 tcaacgttta agacagcacc gaagacatct atagttttaa aagacaacaa attagaagat
     1261 atctaccaca tatataaaaa taatttgtgt ccagaatatt ccaagaattc ctacaaatca
     1321 gtgagaaaaa gacaaaataa taggaaaaca gcaaaggata taaataggca gttctctgaa
     1381 taagaattac aaatggtcaa taaacacatg taaagacgct caatatgaaa agatgtttaa
     1441 cctcactagt aatcaaggaa acaagaatta aaacaagata aattaggtat atatttttaa
     1501 gccagcggaa tagggaaact atgacagact actataacct aatgttag
//
LOCUS       XM_032619681             480 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus chromosome 2 C14orf180 homolog
            (C2H14orf180), mRNA.
ACCESSION   XM_032619681
VERSION     XM_032619681.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..480
                     /gene="C2H14orf180"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:116747457"
     CDS             1..480
                     /gene="C2H14orf180"
                     /codon_start=1
                     /product="nutritionally-regulated adipose and cardiac
                     enriched protein homolog"
                     /protein_id="XP_032475572.1"
                     /db_xref="GeneID:116747457"
                     /translation="MKTAAHALSPDSLPETRHQTRKNEAAAPGSPVLGAGRDDRKGPP
                     SILRRSPQERHSHGAEPRRTTRHVRFREPLEVAVHYIACREPSAMARAPGRRRPRDSA
                     LILRLTACILLVLALGLCCSRAEPVALALEDLRARLLALRVRLQLAALACWRHLLQL"
     misc_feature    112..462
                     /gene="C2H14orf180"
                     /note="Domain of unknown function (DUF4658); Region:
                     DUF4658; pfam15555"
                     /db_xref="CDD:464765"
ORIGIN      
        1 atgaagacgg cggcacacgc cctgagcccc gactccctgc cagagacgcg gcatcagacc
       61 agaaagaatg aggcggcggc tccaggctca cccgtgctcg gggcggggag ggacgacagg
      121 aagggccccc cctctatcct gagacgaagc ccgcaggagc gccacagcca tggggccgag
      181 ccacggagga ccacgaggca cgtgcggttc cgcgagcccc tggaggtggc cgtccactac
      241 atcgcctgca gggagccctc cgccatggcc agggcgcccg gccggcgcag gccccgcgac
      301 agcgccctga tcctgcggct gacggcgtgc atcctgctgg tgctggcgct ggggctgtgc
      361 tgcagccggg ccgagcccgt ggcactggcc ctggaggacc tccgggcccg gctcctggcc
      421 ctccgtgtgc gtctgcagct cgcggccctg gcctgctggc gccacctcct gcagctctga
//
LOCUS       XR_004348058             580 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747463
            (LOC116747463), ncRNA.
ACCESSION   XR_004348058
VERSION     XR_004348058.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..580
                     /gene="LOC116747463"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116747463"
     ncRNA           1..580
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747463"
                     /product="uncharacterized LOC116747463"
                     /db_xref="GeneID:116747463"
ORIGIN      
        1 cagaagcatc agcttcccag gagagaccat gatgcagagc cccatacatt accttaaata
       61 ctagaactat gtggagtttg gacctgcggg ggatgcccca tggagactgc gaatggggct
      121 aacacagtag gaggcagaga aattcagcgt catgagctgc acagagctcc taaaaccctt
      181 ggaatttcta aagcgccgcg agtgatgaag gtgtcttttg ttatgttaat gaggtgactt
      241 ttggaatgct ccttgatcac ttaaggatga gtactggtca gcagaggaac cagccacttg
      301 attagagagt cggaactttc agtcccatcc ccctgacctc tggggacgag ggagagccca
      361 gaagttgagt caatcacaac agtgccaatg agttaatcaa ccatggctat ataatgaagc
      421 ctccacaaac acctaaaagg actgggttca aagagcttcc aagttggtga acacacaggg
      481 atttggggag aatggcccac tccaagaggg cagggaagct cggcgcccct tcccacatac
      541 cttgccctgt gcatcaattc tatcctgctg ttcccgagtt
//
LOCUS       XM_032619704            4840 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3),
            transcript variant X1, mRNA.
ACCESSION   XM_032619704
VERSION     XM_032619704.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4840
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4840
                     /gene="PFKFB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 long SRA reads, 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747467"
     CDS             762..2327
                     /gene="PFKFB3"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X1"
                     /protein_id="XP_032475595.1"
                     /db_xref="GeneID:116747467"
                     /translation="MPLELTQSRVQKIWIPVDHRPSLPRSCGPKLTNSPTVIVMVGLP
                     ARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQC
                     ALAALRDVKSYLTKEGGQIAVFDATNTTRERRHMILHFAKENDFKVFFIESVCDDPTV
                     VASNIMEVKISSPDYKDCNSAEAMDDFMKRINCYEASYQPLDPDKCDRDLSLIKVIDV
                     GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGESEHNLQGKIGGDSGLSSRGR
                     KFANALSKFVEEQNLKDLKVWTSQLKSTIQTAEALQLPYEQWKALNEIDAGVCEEMTY
                     EEIKDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVL
                     RCLLAYFLDKSAEEMPYLKCPLHAVLKLTPVAYGCRVESIYLNVESVSTHRERSEDAK
                     KGPNPLMRRNSVTPLASPEPAKKPRINSFEEHMASASAALPTCLPPEVPTQLPGQQNM
                     KGSPSGAEASRTH"
     misc_feature    837..1499
                     /gene="PFKFB3"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    1506..2066
                     /gene="PFKFB3"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 tatggggtcc cattcccaga gagaccgagt acgcagtatg cattaagcat gccaggtgat
       61 tcggcagagg ggcttcgtgg accacagtgg acggtgctgt ttctttcctc ccagcgcagt
      121 tgagttgact attctgggag gctgcgcagg tcgcttttag gggatgatag gaggaggctc
      181 acggagtagc actttcagcc agggctggtt tagggcgtta tccgggggac ctcagtagcc
      241 gggcgcgcca gtgtcgccgg cctgcagggg gcgccagcag gctgtctcct ggctgggcca
      301 ccctccttcc acgtgaaagg gggatggaac acgaggaatg cgtccccgcc ccggggctga
      361 cgtgtgcgtc tctgccggcc cggattctta aaagcccggg aggagcgccg ggcatcccag
      421 cagagccaga gaggaggtga gttgatgtgg accgcggcgc actcgagcca gagcacaggg
      481 accgcggctg tcacggcgct ccgagcatcc cggggcttcc cgagcggaag agtccatccc
      541 tgcgggagct gcgggtgcag ccccagccct cccgctcctc tctgagagcc tcacgcctcg
      601 ggcgagcgtc cgtgatttag cacaaagcac gtttccaaaa agccgcgctc tcacgcacgc
      661 accccctccc ccctttgttt cggggggtcg ccagaccgct ctcctcccca agtccgaatt
      721 cttcagaagg ggcggagggc cgccgagtct cggctgagaa gatgcccctg gagctgactc
      781 agagccgggt gcagaagatc tggatcccgg tcgaccaccg cccctcgttg cccagatcct
      841 gtgggccgaa gctcaccaac tccccaacgg tgattgtcat ggtgggcctc ccagcccggg
      901 ggaagacgta catctccaag aagctgaccc gctacctcaa ctggattggc gtccccacga
      961 aagtgttcaa cgtgggcgag taccgccggg aggccgtgaa gcagtacagc tcctacaact
     1021 tcttccgccc cgacaatgag gaggccatga aagtccgcaa gcagtgtgcg ctggctgcct
     1081 tgagagatgt caagagttac ctgacgaagg aagggggcca aattgcagtt ttcgacgcca
     1141 ccaatactac tagagagagg agacacatga tccttcattt tgccaaagaa aatgatttca
     1201 aggtgttttt cattgagtct gtgtgtgatg atcctacagt tgtggcctcc aacatcatgg
     1261 aagtgaaaat ctccagcccg gattacaaag actgcaactc agcagaagct atggacgatt
     1321 tcatgaagag aattaattgc tatgaagcca gctaccagcc cctcgacccc gataaatgtg
     1381 acagggacct gtccctgatc aaggtgatcg acgtgggccg gcggttcctg gtgaacaggg
     1441 tccaggacca catccagagc cgcatcgtgt actacctgat gaacatccac gtgcagcccc
     1501 gcaccatcta cctgtgccgg catggggaga gcgagcacaa cctccagggc aagatcggcg
     1561 gggactcggg cctgtccagc aggggcagga agttcgccaa tgccctgagc aagtttgtgg
     1621 aggagcagaa cctgaaggac ctcaaggtgt ggaccagcca gctgaagagc accatccaga
     1681 cggcagaggc cctgcagctc ccctacgagc agtggaaggc gctcaacgag attgacgccg
     1741 gtgtctgtga ggagatgacc tacgaggaga tcaaagacac ctaccccgag gagtacgcac
     1801 tgcgcgagca ggacaagtac tactaccgct accccaccgg ggagtcctac caggacctgg
     1861 tccagcgcct ggagccggtg atcatggagc tggagcggca ggagaacgtg ctggtcatct
     1921 gccaccaggc cgtcctgcgc tgcctcctgg cctacttcct ggacaagagc gcagaggaga
     1981 tgccctacct gaaatgcccc cttcacgctg tcctgaagct gacgcctgtc gcttacggct
     2041 gccgagtaga atccatctac ctgaacgtgg agtccgtgag cacacatcgg gagaggtcag
     2101 aggatgcaaa gaagggacct aacccgctca tgagacgcaa tagtgtcacc ccactagcca
     2161 gccccgagcc cgccaaaaag cctcgcatca acagctttga ggagcatatg gcctctgcct
     2221 ccgctgccct gcccacctgc ctgcccccgg aggtgcccac gcagctgccc ggacaacaga
     2281 acatgaaagg ctccccgagc ggcgcggagg cctccaggac gcactgacgc agccccgccg
     2341 gcgccccgcc ctttcgctcc cgcagctttg ctcctgccct tctgtctgcc caaggccagc
     2401 gatcccgagg acatctcccg gagggcggcg tggaggaggg gctgctgctc caggaggacc
     2461 gggcccccgc ctgcctgtgc tcccctggcc ttcgggccac gcgccccgcg gaccccttga
     2521 ggcccgggaa ggacgatgtg cagtggaggc gggacggcgg cgcctccccg tgggcttgtt
     2581 cgtctcgttt ctggaccttc cctgctgggg agatgacact gccccgagtc ctaaccttaa
     2641 agggggcctg gatctcagct gctgaaggtt aagggacact gaagactttc agaaggctct
     2701 tggtgcctct cggcctggac gttgcctcct gcagggagcc ctcggcccgt gctaggttgg
     2761 ggtcggccgg gagagcccgg agctggacct gctggtcagc caggcagcga ccctccgcgc
     2821 gtcgctcacc ctcccgggtg tgtgtcctgt ctctgaagat ggtgtgggac cgtctagctg
     2881 cggaggcagg aggaaatacg ttgccgaaag agcaccgggg cctcgcctcc cagggaaggc
     2941 tcctgcctgg attcgaggcg cctgggacac ggctctcccg ggactgctgg ctcgtgcact
     3001 ttttttatgg cagagagttt gacctgaaag tcacaccttc aggaacttag atgtttgcat
     3061 tttgcgccct tggggttgga gctctgaaag tatgtgggag ttgggcagcc tgtggggagg
     3121 ggaggggccc ctcaccccgt aaaacggccg gggaacgagg gcctggcctc ctcctttggg
     3181 gccttcatca cctcctgtgt ttccccggtg gggccagtgg cccaagccag gcctcgctcg
     3241 cggccacttc ctccgagagc ctggctatcc actgtctcct ggcaggattc agctccgttc
     3301 cctacgcttg tgtcaggcgt ctcctgtgtg cccagcatgg agctgggtgc cttgggagat
     3361 tctggaggag agaatgtcct cgtttgcctt catggcacct gtggcatttt gggggcgtgg
     3421 ttcaaggcag ggcttgtgaa cacgtggttc taaacacctg tagtttccgc ctgcgggttt
     3481 tcctctgagg cctccgagga ctgggggagg gggggtgtcg aggcccagga ggatggattg
     3541 ggactccgca gtagagtttg tccaaatgac ccttttcagg atttctgaaa gccggtgcca
     3601 aaggtcacct tcccttccct tcctgccttc tgctttgggg tcccacatct ttacccctct
     3661 tagcgtgtgc agtagtcact gggggtagag gcaggggcgt ctagacagct ggagctggga
     3721 gtggggagag gagctgtttt ggggttttgt ttgagaggag cttgtagaaa aatgcacgtt
     3781 cctctggttg ggagaaatga gaacaccatt cagacacctt acaatcaggt ttgtgggttt
     3841 cacacaaaac cattcaaatc ctcccttccc ttaactggcc atcttcccaa gaccatgtct
     3901 ctctgtacat tccgtgcaag actggttact ttctcacttt cccgctgtct tgtcagacgt
     3961 gtgtgtgtgt gtgtgtgtgt gtaggtttgt gtttttagat ggaggggcct gcagctctgc
     4021 tcttgagaat ggctctctta tgtccacctt ttggttcctt ctctggttgt cggagctgac
     4081 cctgaatttt gactcttctg gctggtctga gtggggtctt cgtgaaggtg tgtaccccct
     4141 tgcctctgac tgcctgaaat cagtgcatcc acaaaggatg cgcttggcct aacccgggac
     4201 cttggttttc aggagcccca gtggggagag agaacatcaa tacgggcggg gaggggagat
     4261 ggggagaggg cggaggctgg gagactggag accaggggcc tgacatctga ggagggagga
     4321 ggtggacaag ggtgtgtctg agccacggtc tcagggcttc tgcaacgccg accattgact
     4381 ctcactccct caccccccgg aaaacatctg ggaccaatat ttttaacttt gcatgtttgt
     4441 tttgggggcg ggctcacccc tctccttctg tcctgagact gtgggcgaag ctcttcgttt
     4501 gggggcgggg ggaagaaaga ctgttggaac cacgccaatg acgttttcgt ttctaatact
     4561 tgaaatttat ttttttatta ttttgatagc agatgtgcta tttatttatt taataagtat
     4621 aagggatcct gaatacggaa agctgtatag attgggtctt gttagttggt tggcttaggg
     4681 gccttttacg tgtgatttct gacttctctg tgctctgtat acatttgtct gaattaatta
     4741 cccgggatga agctgtgcca gctttcaaac aggggatgcc tgtcggaaat gtgtatattt
     4801 tgcagttgcc agaacaataa aatacctggt tgaaataaca
//
LOCUS       XM_032619711            4831 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3),
            transcript variant X2, mRNA.
ACCESSION   XM_032619711
VERSION     XM_032619711.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4831
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4831
                     /gene="PFKFB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 31
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747467"
     CDS             756..2318
                     /gene="PFKFB3"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X2"
                     /protein_id="XP_032475602.1"
                     /db_xref="GeneID:116747467"
                     /translation="MPLELTQSRVQKIWIPVDHRPSLPRSCGPKLTNSPTVIVMVGLP
                     ARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQC
                     ALAALRDVKSYLTKEGGQIAVFDATNTTRERRHMILHFAKENDFKVFFIESVCDDPTV
                     VASNIMEVKISSPDYKDCNSAEAMDDFMKRINCYEASYQPLDPDKCDRDLSLIKVIDV
                     GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGESEHNLQGKIGGDSGLSSRGR
                     KFANALSKFVEEQNLKDLKVWTSQLKSTIQTAEALQLPYEQWKALNEIDAGVCEEMTY
                     EEIKDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVL
                     RCLLAYFLDKSAEEMPYLKCPLHAVLKLTPVAYGCRVESIYLNVESVSTHRERSEDAK
                     KGPNPLMRRNSVTPLASPEPAKKPRINSFEEHMASASAALPTCLPPEVPTQLPGQNMK
                     GSPSGAEASRTH"
     misc_feature    831..1493
                     /gene="PFKFB3"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    1500..2060
                     /gene="PFKFB3"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 gtcccattcc cagagagacc gagtacgcag tatgcattaa gcatgccagg tgattcggca
       61 gaggggcttc gtggaccaca gtggacggtg ctgtttcttt cctcccagcg cagttgagtt
      121 gactattctg ggaggctgcg caggtcgctt ttaggggatg ataggaggag gctcacggag
      181 tagcactttc agccagggct ggtttagggc gttatccggg ggacctcagt agccgggcgc
      241 gccagtgtcg ccggcctgca gggggcgcca gcaggctgtc tcctggctgg gccaccctcc
      301 ttccacgtga aagggggatg gaacacgagg aatgcgtccc cgccccgggg ctgacgtgtg
      361 cgtctctgcc ggcccggatt cttaaaagcc cgggaggagc gccgggcatc ccagcagagc
      421 cagagaggag gtgagttgat gtggaccgcg gcgcactcga gccagagcac agggaccgcg
      481 gctgtcacgg cgctccgagc atcccggggc ttcccgagcg gaagagtcca tccctgcggg
      541 agctgcgggt gcagccccag ccctcccgct cctctctgag agcctcacgc ctcgggcgag
      601 cgtccgtgat ttagcacaaa gcacgtttcc aaaaagccgc gctctcacgc acgcaccccc
      661 tccccccttt gtttcggggg gtcgccagac cgctctcctc cccaagtccg aattcttcag
      721 aaggggcgga gggccgccga gtctcggctg agaagatgcc cctggagctg actcagagcc
      781 gggtgcagaa gatctggatc ccggtcgacc accgcccctc gttgcccaga tcctgtgggc
      841 cgaagctcac caactcccca acggtgattg tcatggtggg cctcccagcc cgggggaaga
      901 cgtacatctc caagaagctg acccgctacc tcaactggat tggcgtcccc acgaaagtgt
      961 tcaacgtggg cgagtaccgc cgggaggccg tgaagcagta cagctcctac aacttcttcc
     1021 gccccgacaa tgaggaggcc atgaaagtcc gcaagcagtg tgcgctggct gccttgagag
     1081 atgtcaagag ttacctgacg aaggaagggg gccaaattgc agttttcgac gccaccaata
     1141 ctactagaga gaggagacac atgatccttc attttgccaa agaaaatgat ttcaaggtgt
     1201 ttttcattga gtctgtgtgt gatgatccta cagttgtggc ctccaacatc atggaagtga
     1261 aaatctccag cccggattac aaagactgca actcagcaga agctatggac gatttcatga
     1321 agagaattaa ttgctatgaa gccagctacc agcccctcga ccccgataaa tgtgacaggg
     1381 acctgtccct gatcaaggtg atcgacgtgg gccggcggtt cctggtgaac agggtccagg
     1441 accacatcca gagccgcatc gtgtactacc tgatgaacat ccacgtgcag ccccgcacca
     1501 tctacctgtg ccggcatggg gagagcgagc acaacctcca gggcaagatc ggcggggact
     1561 cgggcctgtc cagcaggggc aggaagttcg ccaatgccct gagcaagttt gtggaggagc
     1621 agaacctgaa ggacctcaag gtgtggacca gccagctgaa gagcaccatc cagacggcag
     1681 aggccctgca gctcccctac gagcagtgga aggcgctcaa cgagattgac gccggtgtct
     1741 gtgaggagat gacctacgag gagatcaaag acacctaccc cgaggagtac gcactgcgcg
     1801 agcaggacaa gtactactac cgctacccca ccggggagtc ctaccaggac ctggtccagc
     1861 gcctggagcc ggtgatcatg gagctggagc ggcaggagaa cgtgctggtc atctgccacc
     1921 aggccgtcct gcgctgcctc ctggcctact tcctggacaa gagcgcagag gagatgccct
     1981 acctgaaatg cccccttcac gctgtcctga agctgacgcc tgtcgcttac ggctgccgag
     2041 tagaatccat ctacctgaac gtggagtccg tgagcacaca tcgggagagg tcagaggatg
     2101 caaagaaggg acctaacccg ctcatgagac gcaatagtgt caccccacta gccagccccg
     2161 agcccgccaa aaagcctcgc atcaacagct ttgaggagca tatggcctct gcctccgctg
     2221 ccctgcccac ctgcctgccc ccggaggtgc ccacgcagct gcccggacaa aacatgaaag
     2281 gctccccgag cggcgcggag gcctccagga cgcactgacg cagccccgcc ggcgccccgc
     2341 cctttcgctc ccgcagcttt gctcctgccc ttctgtctgc ccaaggccag cgatcccgag
     2401 gacatctccc ggagggcggc gtggaggagg ggctgctgct ccaggaggac cgggcccccg
     2461 cctgcctgtg ctcccctggc cttcgggcca cgcgccccgc ggaccccttg aggcccggga
     2521 aggacgatgt gcagtggagg cgggacggcg gcgcctcccc gtgggcttgt tcgtctcgtt
     2581 tctggacctt ccctgctggg gagatgacac tgccccgagt cctaacctta aagggggcct
     2641 ggatctcagc tgctgaaggt taagggacac tgaagacttt cagaaggctc ttggtgcctc
     2701 tcggcctgga cgttgcctcc tgcagggagc cctcggcccg tgctaggttg gggtcggccg
     2761 ggagagcccg gagctggacc tgctggtcag ccaggcagcg accctccgcg cgtcgctcac
     2821 cctcccgggt gtgtgtcctg tctctgaaga tggtgtggga ccgtctagct gcggaggcag
     2881 gaggaaatac gttgccgaaa gagcaccggg gcctcgcctc ccagggaagg ctcctgcctg
     2941 gattcgaggc gcctgggaca cggctctccc gggactgctg gctcgtgcac tttttttatg
     3001 gcagagagtt tgacctgaaa gtcacacctt caggaactta gatgtttgca ttttgcgccc
     3061 ttggggttgg agctctgaaa gtatgtggga gttgggcagc ctgtggggag gggaggggcc
     3121 cctcaccccg taaaacggcc ggggaacgag ggcctggcct cctcctttgg ggccttcatc
     3181 acctcctgtg tttccccggt ggggccagtg gcccaagcca ggcctcgctc gcggccactt
     3241 cctccgagag cctggctatc cactgtctcc tggcaggatt cagctccgtt ccctacgctt
     3301 gtgtcaggcg tctcctgtgt gcccagcatg gagctgggtg ccttgggaga ttctggagga
     3361 gagaatgtcc tcgtttgcct tcatggcacc tgtggcattt tgggggcgtg gttcaaggca
     3421 gggcttgtga acacgtggtt ctaaacacct gtagtttccg cctgcgggtt ttcctctgag
     3481 gcctccgagg actgggggag ggggggtgtc gaggcccagg aggatggatt gggactccgc
     3541 agtagagttt gtccaaatga cccttttcag gatttctgaa agccggtgcc aaaggtcacc
     3601 ttcccttccc ttcctgcctt ctgctttggg gtcccacatc tttacccctc ttagcgtgtg
     3661 cagtagtcac tgggggtaga ggcaggggcg tctagacagc tggagctggg agtggggaga
     3721 ggagctgttt tggggttttg tttgagagga gcttgtagaa aaatgcacgt tcctctggtt
     3781 gggagaaatg agaacaccat tcagacacct tacaatcagg tttgtgggtt tcacacaaaa
     3841 ccattcaaat cctcccttcc cttaactggc catcttccca agaccatgtc tctctgtaca
     3901 ttccgtgcaa gactggttac tttctcactt tcccgctgtc ttgtcagacg tgtgtgtgtg
     3961 tgtgtgtgtg tgtaggtttg tgtttttaga tggaggggcc tgcagctctg ctcttgagaa
     4021 tggctctctt atgtccacct tttggttcct tctctggttg tcggagctga ccctgaattt
     4081 tgactcttct ggctggtctg agtggggtct tcgtgaaggt gtgtaccccc ttgcctctga
     4141 ctgcctgaaa tcagtgcatc cacaaaggat gcgcttggcc taacccggga ccttggtttt
     4201 caggagcccc agtggggaga gagaacatca atacgggcgg ggaggggaga tggggagagg
     4261 gcggaggctg ggagactgga gaccaggggc ctgacatctg aggagggagg aggtggacaa
     4321 gggtgtgtct gagccacggt ctcagggctt ctgcaacgcc gaccattgac tctcactccc
     4381 tcaccccccg gaaaacatct gggaccaata tttttaactt tgcatgtttg ttttgggggc
     4441 gggctcaccc ctctccttct gtcctgagac tgtgggcgaa gctcttcgtt tgggggcggg
     4501 gggaagaaag actgttggaa ccacgccaat gacgttttcg tttctaatac ttgaaattta
     4561 tttttttatt attttgatag cagatgtgct atttatttat ttaataagta taagggatcc
     4621 tgaatacgga aagctgtata gattgggtct tgttagttgg ttggcttagg ggccttttac
     4681 gtgtgatttc tgacttctct gtgctctgta tacatttgtc tgaattaatt acccgggatg
     4741 aagctgtgcc agctttcaaa caggggatgc ctgtcggaaa tgtgtatatt ttgcagttgc
     4801 cagaacaata aaatacctgg ttgaaataac a
//
LOCUS       XM_032619719            4111 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3),
            transcript variant X3, mRNA.
ACCESSION   XM_032619719
VERSION     XM_032619719.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4111
                     /gene="PFKFB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747467"
     CDS             48..1598
                     /gene="PFKFB3"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X3"
                     /protein_id="XP_032475610.1"
                     /db_xref="GeneID:116747467"
                     /translation="MGSGLCAAAGSRCHGRSSREACGPKLTNSPTVIVMVGLPARGKT
                     YISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAAL
                     RDVKSYLTKEGGQIAVFDATNTTRERRHMILHFAKENDFKVFFIESVCDDPTVVASNI
                     MEVKISSPDYKDCNSAEAMDDFMKRINCYEASYQPLDPDKCDRDLSLIKVIDVGRRFL
                     VNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGESEHNLQGKIGGDSGLSSRGRKFANA
                     LSKFVEEQNLKDLKVWTSQLKSTIQTAEALQLPYEQWKALNEIDAGVCEEMTYEEIKD
                     TYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVLRCLLA
                     YFLDKSAEEMPYLKCPLHAVLKLTPVAYGCRVESIYLNVESVSTHRERSEDAKKGPNP
                     LMRRNSVTPLASPEPAKKPRINSFEEHMASASAALPTCLPPEVPTQLPGQQNMKGSPS
                     GAEASRTH"
     misc_feature    99..770
                     /gene="PFKFB3"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    777..1337
                     /gene="PFKFB3"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 ggaaacagag gagcaaagat gcatctacca gcctgttggg tgccgtgatg gggtcaggtc
       61 tctgtgctgc tgcgggttcc cgttgccatg gaaggagcag cagagaagcc tgtgggccga
      121 agctcaccaa ctccccaacg gtgattgtca tggtgggcct cccagcccgg gggaagacgt
      181 acatctccaa gaagctgacc cgctacctca actggattgg cgtccccacg aaagtgttca
      241 acgtgggcga gtaccgccgg gaggccgtga agcagtacag ctcctacaac ttcttccgcc
      301 ccgacaatga ggaggccatg aaagtccgca agcagtgtgc gctggctgcc ttgagagatg
      361 tcaagagtta cctgacgaag gaagggggcc aaattgcagt tttcgacgcc accaatacta
      421 ctagagagag gagacacatg atccttcatt ttgccaaaga aaatgatttc aaggtgtttt
      481 tcattgagtc tgtgtgtgat gatcctacag ttgtggcctc caacatcatg gaagtgaaaa
      541 tctccagccc ggattacaaa gactgcaact cagcagaagc tatggacgat ttcatgaaga
      601 gaattaattg ctatgaagcc agctaccagc ccctcgaccc cgataaatgt gacagggacc
      661 tgtccctgat caaggtgatc gacgtgggcc ggcggttcct ggtgaacagg gtccaggacc
      721 acatccagag ccgcatcgtg tactacctga tgaacatcca cgtgcagccc cgcaccatct
      781 acctgtgccg gcatggggag agcgagcaca acctccaggg caagatcggc ggggactcgg
      841 gcctgtccag caggggcagg aagttcgcca atgccctgag caagtttgtg gaggagcaga
      901 acctgaagga cctcaaggtg tggaccagcc agctgaagag caccatccag acggcagagg
      961 ccctgcagct cccctacgag cagtggaagg cgctcaacga gattgacgcc ggtgtctgtg
     1021 aggagatgac ctacgaggag atcaaagaca cctaccccga ggagtacgca ctgcgcgagc
     1081 aggacaagta ctactaccgc taccccaccg gggagtccta ccaggacctg gtccagcgcc
     1141 tggagccggt gatcatggag ctggagcggc aggagaacgt gctggtcatc tgccaccagg
     1201 ccgtcctgcg ctgcctcctg gcctacttcc tggacaagag cgcagaggag atgccctacc
     1261 tgaaatgccc ccttcacgct gtcctgaagc tgacgcctgt cgcttacggc tgccgagtag
     1321 aatccatcta cctgaacgtg gagtccgtga gcacacatcg ggagaggtca gaggatgcaa
     1381 agaagggacc taacccgctc atgagacgca atagtgtcac cccactagcc agccccgagc
     1441 ccgccaaaaa gcctcgcatc aacagctttg aggagcatat ggcctctgcc tccgctgccc
     1501 tgcccacctg cctgcccccg gaggtgccca cgcagctgcc cggacaacag aacatgaaag
     1561 gctccccgag cggcgcggag gcctccagga cgcactgacg cagccccgcc ggcgccccgc
     1621 cctttcgctc ccgcagcttt gctcctgccc ttctgtctgc ccaaggccag cgatcccgag
     1681 gacatctccc ggagggcggc gtggaggagg ggctgctgct ccaggaggac cgggcccccg
     1741 cctgcctgtg ctcccctggc cttcgggcca cgcgccccgc ggaccccttg aggcccggga
     1801 aggacgatgt gcagtggagg cgggacggcg gcgcctcccc gtgggcttgt tcgtctcgtt
     1861 tctggacctt ccctgctggg gagatgacac tgccccgagt cctaacctta aagggggcct
     1921 ggatctcagc tgctgaaggt taagggacac tgaagacttt cagaaggctc ttggtgcctc
     1981 tcggcctgga cgttgcctcc tgcagggagc cctcggcccg tgctaggttg gggtcggccg
     2041 ggagagcccg gagctggacc tgctggtcag ccaggcagcg accctccgcg cgtcgctcac
     2101 cctcccgggt gtgtgtcctg tctctgaaga tggtgtggga ccgtctagct gcggaggcag
     2161 gaggaaatac gttgccgaaa gagcaccggg gcctcgcctc ccagggaagg ctcctgcctg
     2221 gattcgaggc gcctgggaca cggctctccc gggactgctg gctcgtgcac tttttttatg
     2281 gcagagagtt tgacctgaaa gtcacacctt caggaactta gatgtttgca ttttgcgccc
     2341 ttggggttgg agctctgaaa gtatgtggga gttgggcagc ctgtggggag gggaggggcc
     2401 cctcaccccg taaaacggcc ggggaacgag ggcctggcct cctcctttgg ggccttcatc
     2461 acctcctgtg tttccccggt ggggccagtg gcccaagcca ggcctcgctc gcggccactt
     2521 cctccgagag cctggctatc cactgtctcc tggcaggatt cagctccgtt ccctacgctt
     2581 gtgtcaggcg tctcctgtgt gcccagcatg gagctgggtg ccttgggaga ttctggagga
     2641 gagaatgtcc tcgtttgcct tcatggcacc tgtggcattt tgggggcgtg gttcaaggca
     2701 gggcttgtga acacgtggtt ctaaacacct gtagtttccg cctgcgggtt ttcctctgag
     2761 gcctccgagg actgggggag ggggggtgtc gaggcccagg aggatggatt gggactccgc
     2821 agtagagttt gtccaaatga cccttttcag gatttctgaa agccggtgcc aaaggtcacc
     2881 ttcccttccc ttcctgcctt ctgctttggg gtcccacatc tttacccctc ttagcgtgtg
     2941 cagtagtcac tgggggtaga ggcaggggcg tctagacagc tggagctggg agtggggaga
     3001 ggagctgttt tggggttttg tttgagagga gcttgtagaa aaatgcacgt tcctctggtt
     3061 gggagaaatg agaacaccat tcagacacct tacaatcagg tttgtgggtt tcacacaaaa
     3121 ccattcaaat cctcccttcc cttaactggc catcttccca agaccatgtc tctctgtaca
     3181 ttccgtgcaa gactggttac tttctcactt tcccgctgtc ttgtcagacg tgtgtgtgtg
     3241 tgtgtgtgtg tgtaggtttg tgtttttaga tggaggggcc tgcagctctg ctcttgagaa
     3301 tggctctctt atgtccacct tttggttcct tctctggttg tcggagctga ccctgaattt
     3361 tgactcttct ggctggtctg agtggggtct tcgtgaaggt gtgtaccccc ttgcctctga
     3421 ctgcctgaaa tcagtgcatc cacaaaggat gcgcttggcc taacccggga ccttggtttt
     3481 caggagcccc agtggggaga gagaacatca atacgggcgg ggaggggaga tggggagagg
     3541 gcggaggctg ggagactgga gaccaggggc ctgacatctg aggagggagg aggtggacaa
     3601 gggtgtgtct gagccacggt ctcagggctt ctgcaacgcc gaccattgac tctcactccc
     3661 tcaccccccg gaaaacatct gggaccaata tttttaactt tgcatgtttg ttttgggggc
     3721 gggctcaccc ctctccttct gtcctgagac tgtgggcgaa gctcttcgtt tgggggcggg
     3781 gggaagaaag actgttggaa ccacgccaat gacgttttcg tttctaatac ttgaaattta
     3841 tttttttatt attttgatag cagatgtgct atttatttat ttaataagta taagggatcc
     3901 tgaatacgga aagctgtata gattgggtct tgttagttgg ttggcttagg ggccttttac
     3961 gtgtgatttc tgacttctct gtgctctgta tacatttgtc tgaattaatt acccgggatg
     4021 aagctgtgcc agctttcaaa caggggatgc ctgtcggaaa tgtgtatatt ttgcagttgc
     4081 cagaacaata aaatacctgg ttgaaataac a
//
LOCUS       XM_032619725            4864 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3),
            transcript variant X4, mRNA.
ACCESSION   XM_032619725
VERSION     XM_032619725.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4864
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4864
                     /gene="PFKFB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 8 long SRA reads, 22
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747467"
     CDS             763..2310
                     /gene="PFKFB3"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X4"
                     /protein_id="XP_032475616.1"
                     /db_xref="GeneID:116747467"
                     /translation="MPLELTQSRVQKIWIPVDHRPSLPRSCGPKLTNSPTVIVMVGLP
                     ARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQC
                     ALAALRDVKSYLTKEGGQIAVFDATNTTRERRHMILHFAKENDFKVFFIESVCDDPTV
                     VASNIMEVKISSPDYKDCNSAEAMDDFMKRINCYEASYQPLDPDKCDRDLSLIKVIDV
                     GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGESEHNLQGKIGGDSGLSSRGR
                     KFANALSKFVEEQNLKDLKVWTSQLKSTIQTAEALQLPYEQWKALNEIDAGVCEEMTY
                     EEIKDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVL
                     RCLLAYFLDKSAEEMPYLKCPLHAVLKLTPVAYGCRVESIYLNVESVSTHRERSEDAK
                     KGPNPLMRRNSVTPLASPEPAKKPRINSFEEHMASASAALPTCLPPEVPTQLPGQPLL
                     GKACFRT"
     misc_feature    838..1500
                     /gene="PFKFB3"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    1507..2067
                     /gene="PFKFB3"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 gtatggggtc ccattcccag agagaccgag tacgcagtat gcattaagca tgccaggtga
       61 ttcggcagag gggcttcgtg gaccacagtg gacggtgctg tttctttcct cccagcgcag
      121 ttgagttgac tattctggga ggctgcgcag gtcgctttta ggggatgata ggaggaggct
      181 cacggagtag cactttcagc cagggctggt ttagggcgtt atccggggga cctcagtagc
      241 cgggcgcgcc agtgtcgccg gcctgcaggg ggcgccagca ggctgtctcc tggctgggcc
      301 accctccttc cacgtgaaag ggggatggaa cacgaggaat gcgtccccgc cccggggctg
      361 acgtgtgcgt ctctgccggc ccggattctt aaaagcccgg gaggagcgcc gggcatccca
      421 gcagagccag agaggaggtg agttgatgtg gaccgcggcg cactcgagcc agagcacagg
      481 gaccgcggct gtcacggcgc tccgagcatc ccggggcttc ccgagcggaa gagtccatcc
      541 ctgcgggagc tgcgggtgca gccccagccc tcccgctcct ctctgagagc ctcacgcctc
      601 gggcgagcgt ccgtgattta gcacaaagca cgtttccaaa aagccgcgct ctcacgcacg
      661 caccccctcc cccctttgtt tcggggggtc gccagaccgc tctcctcccc aagtccgaat
      721 tcttcagaag gggcggaggg ccgccgagtc tcggctgaga agatgcccct ggagctgact
      781 cagagccggg tgcagaagat ctggatcccg gtcgaccacc gcccctcgtt gcccagatcc
      841 tgtgggccga agctcaccaa ctccccaacg gtgattgtca tggtgggcct cccagcccgg
      901 gggaagacgt acatctccaa gaagctgacc cgctacctca actggattgg cgtccccacg
      961 aaagtgttca acgtgggcga gtaccgccgg gaggccgtga agcagtacag ctcctacaac
     1021 ttcttccgcc ccgacaatga ggaggccatg aaagtccgca agcagtgtgc gctggctgcc
     1081 ttgagagatg tcaagagtta cctgacgaag gaagggggcc aaattgcagt tttcgacgcc
     1141 accaatacta ctagagagag gagacacatg atccttcatt ttgccaaaga aaatgatttc
     1201 aaggtgtttt tcattgagtc tgtgtgtgat gatcctacag ttgtggcctc caacatcatg
     1261 gaagtgaaaa tctccagccc ggattacaaa gactgcaact cagcagaagc tatggacgat
     1321 ttcatgaaga gaattaattg ctatgaagcc agctaccagc ccctcgaccc cgataaatgt
     1381 gacagggacc tgtccctgat caaggtgatc gacgtgggcc ggcggttcct ggtgaacagg
     1441 gtccaggacc acatccagag ccgcatcgtg tactacctga tgaacatcca cgtgcagccc
     1501 cgcaccatct acctgtgccg gcatggggag agcgagcaca acctccaggg caagatcggc
     1561 ggggactcgg gcctgtccag caggggcagg aagttcgcca atgccctgag caagtttgtg
     1621 gaggagcaga acctgaagga cctcaaggtg tggaccagcc agctgaagag caccatccag
     1681 acggcagagg ccctgcagct cccctacgag cagtggaagg cgctcaacga gattgacgcc
     1741 ggtgtctgtg aggagatgac ctacgaggag atcaaagaca cctaccccga ggagtacgca
     1801 ctgcgcgagc aggacaagta ctactaccgc taccccaccg gggagtccta ccaggacctg
     1861 gtccagcgcc tggagccggt gatcatggag ctggagcggc aggagaacgt gctggtcatc
     1921 tgccaccagg ccgtcctgcg ctgcctcctg gcctacttcc tggacaagag cgcagaggag
     1981 atgccctacc tgaaatgccc ccttcacgct gtcctgaagc tgacgcctgt cgcttacggc
     2041 tgccgagtag aatccatcta cctgaacgtg gagtccgtga gcacacatcg ggagaggtca
     2101 gaggatgcaa agaagggacc taacccgctc atgagacgca atagtgtcac cccactagcc
     2161 agccccgagc ccgccaaaaa gcctcgcatc aacagctttg aggagcatat ggcctctgcc
     2221 tccgctgccc tgcccacctg cctgcccccg gaggtgccca cgcagctgcc cggacaacct
     2281 ttgctaggga aagcctgttt cagaacatga aaggctcccc gagcggcgcg gaggcctcca
     2341 ggacgcactg acgcagcccc gccggcgccc cgccctttcg ctcccgcagc tttgctcctg
     2401 cccttctgtc tgcccaaggc cagcgatccc gaggacatct cccggagggc ggcgtggagg
     2461 aggggctgct gctccaggag gaccgggccc ccgcctgcct gtgctcccct ggccttcggg
     2521 ccacgcgccc cgcggacccc ttgaggcccg ggaaggacga tgtgcagtgg aggcgggacg
     2581 gcggcgcctc cccgtgggct tgttcgtctc gtttctggac cttccctgct ggggagatga
     2641 cactgccccg agtcctaacc ttaaaggggg cctggatctc agctgctgaa ggttaaggga
     2701 cactgaagac tttcagaagg ctcttggtgc ctctcggcct ggacgttgcc tcctgcaggg
     2761 agccctcggc ccgtgctagg ttggggtcgg ccgggagagc ccggagctgg acctgctggt
     2821 cagccaggca gcgaccctcc gcgcgtcgct caccctcccg ggtgtgtgtc ctgtctctga
     2881 agatggtgtg ggaccgtcta gctgcggagg caggaggaaa tacgttgccg aaagagcacc
     2941 ggggcctcgc ctcccaggga aggctcctgc ctggattcga ggcgcctggg acacggctct
     3001 cccgggactg ctggctcgtg cacttttttt atggcagaga gtttgacctg aaagtcacac
     3061 cttcaggaac ttagatgttt gcattttgcg cccttggggt tggagctctg aaagtatgtg
     3121 ggagttgggc agcctgtggg gaggggaggg gcccctcacc ccgtaaaacg gccggggaac
     3181 gagggcctgg cctcctcctt tggggccttc atcacctcct gtgtttcccc ggtggggcca
     3241 gtggcccaag ccaggcctcg ctcgcggcca cttcctccga gagcctggct atccactgtc
     3301 tcctggcagg attcagctcc gttccctacg cttgtgtcag gcgtctcctg tgtgcccagc
     3361 atggagctgg gtgccttggg agattctgga ggagagaatg tcctcgtttg ccttcatggc
     3421 acctgtggca ttttgggggc gtggttcaag gcagggcttg tgaacacgtg gttctaaaca
     3481 cctgtagttt ccgcctgcgg gttttcctct gaggcctccg aggactgggg gagggggggt
     3541 gtcgaggccc aggaggatgg attgggactc cgcagtagag tttgtccaaa tgaccctttt
     3601 caggatttct gaaagccggt gccaaaggtc accttccctt cccttcctgc cttctgcttt
     3661 ggggtcccac atctttaccc ctcttagcgt gtgcagtagt cactgggggt agaggcaggg
     3721 gcgtctagac agctggagct gggagtgggg agaggagctg ttttggggtt ttgtttgaga
     3781 ggagcttgta gaaaaatgca cgttcctctg gttgggagaa atgagaacac cattcagaca
     3841 ccttacaatc aggtttgtgg gtttcacaca aaaccattca aatcctccct tcccttaact
     3901 ggccatcttc ccaagaccat gtctctctgt acattccgtg caagactggt tactttctca
     3961 ctttcccgct gtcttgtcag acgtgtgtgt gtgtgtgtgt gtgtgtaggt ttgtgttttt
     4021 agatggaggg gcctgcagct ctgctcttga gaatggctct cttatgtcca ccttttggtt
     4081 ccttctctgg ttgtcggagc tgaccctgaa ttttgactct tctggctggt ctgagtgggg
     4141 tcttcgtgaa ggtgtgtacc cccttgcctc tgactgcctg aaatcagtgc atccacaaag
     4201 gatgcgcttg gcctaacccg ggaccttggt tttcaggagc cccagtgggg agagagaaca
     4261 tcaatacggg cggggagggg agatggggag agggcggagg ctgggagact ggagaccagg
     4321 ggcctgacat ctgaggaggg aggaggtgga caagggtgtg tctgagccac ggtctcaggg
     4381 cttctgcaac gccgaccatt gactctcact ccctcacccc ccggaaaaca tctgggacca
     4441 atatttttaa ctttgcatgt ttgttttggg ggcgggctca cccctctcct tctgtcctga
     4501 gactgtgggc gaagctcttc gtttgggggc ggggggaaga aagactgttg gaaccacgcc
     4561 aatgacgttt tcgtttctaa tacttgaaat ttattttttt attattttga tagcagatgt
     4621 gctatttatt tatttaataa gtataaggga tcctgaatac ggaaagctgt atagattggg
     4681 tcttgttagt tggttggctt aggggccttt tacgtgtgat ttctgacttc tctgtgctct
     4741 gtatacattt gtctgaatta attacccggg atgaagctgt gccagctttc aaacagggga
     4801 tgcctgtcgg aaatgtgtat attttgcagt tgccagaaca ataaaatacc tggttgaaat
     4861 aaca
//
LOCUS       XM_032619732            4155 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3),
            transcript variant X5, mRNA.
ACCESSION   XM_032619732
VERSION     XM_032619732.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4155
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4155
                     /gene="PFKFB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747467"
     CDS             140..1645
                     /gene="PFKFB3"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X5"
                     /protein_id="XP_032475623.1"
                     /db_xref="GeneID:116747467"
                     /translation="MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGV
                     PTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLTKEGGQIA
                     VFDATNTTRERRHMILHFAKENDFKVFFIESVCDDPTVVASNIMEVKISSPDYKDCNS
                     AEAMDDFMKRINCYEASYQPLDPDKCDRDLSLIKVIDVGRRFLVNRVQDHIQSRIVYY
                     LMNIHVQPRTIYLCRHGESEHNLQGKIGGDSGLSSRGRKFANALSKFVEEQNLKDLKV
                     WTSQLKSTIQTAEALQLPYEQWKALNEIDAGVCEEMTYEEIKDTYPEEYALREQDKYY
                     YRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVLRCLLAYFLDKSAEEMPYLKC
                     PLHAVLKLTPVAYGCRVESIYLNVESVSTHRERSEDAKKGPNPLMRRNSVTPLASPEP
                     AKKPRINSFEEHMASASAALPTCLPPEVPTQLPGQQNMKGSPSGAEASRTH"
     misc_feature    149..817
                     /gene="PFKFB3"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    824..1384
                     /gene="PFKFB3"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 ctttgcccaa atatgtccct ttcccccctc ctcgcccggc acccggcgcc cgtaggcacc
       61 cccgagccgc ggggctggca ctcggacgtc gcccggcctc ggtgtcccgg gccggcccct
      121 gccggagcgc ccctccagga tgcccttccg gaaagcctgt gggccgaagc tcaccaactc
      181 cccaacggtg attgtcatgg tgggcctccc agcccggggg aagacgtaca tctccaagaa
      241 gctgacccgc tacctcaact ggattggcgt ccccacgaaa gtgttcaacg tgggcgagta
      301 ccgccgggag gccgtgaagc agtacagctc ctacaacttc ttccgccccg acaatgagga
      361 ggccatgaaa gtccgcaagc agtgtgcgct ggctgccttg agagatgtca agagttacct
      421 gacgaaggaa gggggccaaa ttgcagtttt cgacgccacc aatactacta gagagaggag
      481 acacatgatc cttcattttg ccaaagaaaa tgatttcaag gtgtttttca ttgagtctgt
      541 gtgtgatgat cctacagttg tggcctccaa catcatggaa gtgaaaatct ccagcccgga
      601 ttacaaagac tgcaactcag cagaagctat ggacgatttc atgaagagaa ttaattgcta
      661 tgaagccagc taccagcccc tcgaccccga taaatgtgac agggacctgt ccctgatcaa
      721 ggtgatcgac gtgggccggc ggttcctggt gaacagggtc caggaccaca tccagagccg
      781 catcgtgtac tacctgatga acatccacgt gcagccccgc accatctacc tgtgccggca
      841 tggggagagc gagcacaacc tccagggcaa gatcggcggg gactcgggcc tgtccagcag
      901 gggcaggaag ttcgccaatg ccctgagcaa gtttgtggag gagcagaacc tgaaggacct
      961 caaggtgtgg accagccagc tgaagagcac catccagacg gcagaggccc tgcagctccc
     1021 ctacgagcag tggaaggcgc tcaacgagat tgacgccggt gtctgtgagg agatgaccta
     1081 cgaggagatc aaagacacct accccgagga gtacgcactg cgcgagcagg acaagtacta
     1141 ctaccgctac cccaccgggg agtcctacca ggacctggtc cagcgcctgg agccggtgat
     1201 catggagctg gagcggcagg agaacgtgct ggtcatctgc caccaggccg tcctgcgctg
     1261 cctcctggcc tacttcctgg acaagagcgc agaggagatg ccctacctga aatgccccct
     1321 tcacgctgtc ctgaagctga cgcctgtcgc ttacggctgc cgagtagaat ccatctacct
     1381 gaacgtggag tccgtgagca cacatcggga gaggtcagag gatgcaaaga agggacctaa
     1441 cccgctcatg agacgcaata gtgtcacccc actagccagc cccgagcccg ccaaaaagcc
     1501 tcgcatcaac agctttgagg agcatatggc ctctgcctcc gctgccctgc ccacctgcct
     1561 gcccccggag gtgcccacgc agctgcccgg acaacagaac atgaaaggct ccccgagcgg
     1621 cgcggaggcc tccaggacgc actgacgcag ccccgccggc gccccgccct ttcgctcccg
     1681 cagctttgct cctgcccttc tgtctgccca aggccagcga tcccgaggac atctcccgga
     1741 gggcggcgtg gaggaggggc tgctgctcca ggaggaccgg gcccccgcct gcctgtgctc
     1801 ccctggcctt cgggccacgc gccccgcgga ccccttgagg cccgggaagg acgatgtgca
     1861 gtggaggcgg gacggcggcg cctccccgtg ggcttgttcg tctcgtttct ggaccttccc
     1921 tgctggggag atgacactgc cccgagtcct aaccttaaag ggggcctgga tctcagctgc
     1981 tgaaggttaa gggacactga agactttcag aaggctcttg gtgcctctcg gcctggacgt
     2041 tgcctcctgc agggagccct cggcccgtgc taggttgggg tcggccggga gagcccggag
     2101 ctggacctgc tggtcagcca ggcagcgacc ctccgcgcgt cgctcaccct cccgggtgtg
     2161 tgtcctgtct ctgaagatgg tgtgggaccg tctagctgcg gaggcaggag gaaatacgtt
     2221 gccgaaagag caccggggcc tcgcctccca gggaaggctc ctgcctggat tcgaggcgcc
     2281 tgggacacgg ctctcccggg actgctggct cgtgcacttt ttttatggca gagagtttga
     2341 cctgaaagtc acaccttcag gaacttagat gtttgcattt tgcgcccttg gggttggagc
     2401 tctgaaagta tgtgggagtt gggcagcctg tggggagggg aggggcccct caccccgtaa
     2461 aacggccggg gaacgagggc ctggcctcct cctttggggc cttcatcacc tcctgtgttt
     2521 ccccggtggg gccagtggcc caagccaggc ctcgctcgcg gccacttcct ccgagagcct
     2581 ggctatccac tgtctcctgg caggattcag ctccgttccc tacgcttgtg tcaggcgtct
     2641 cctgtgtgcc cagcatggag ctgggtgcct tgggagattc tggaggagag aatgtcctcg
     2701 tttgccttca tggcacctgt ggcattttgg gggcgtggtt caaggcaggg cttgtgaaca
     2761 cgtggttcta aacacctgta gtttccgcct gcgggttttc ctctgaggcc tccgaggact
     2821 gggggagggg gggtgtcgag gcccaggagg atggattggg actccgcagt agagtttgtc
     2881 caaatgaccc ttttcaggat ttctgaaagc cggtgccaaa ggtcaccttc ccttcccttc
     2941 ctgccttctg ctttggggtc ccacatcttt acccctctta gcgtgtgcag tagtcactgg
     3001 gggtagaggc aggggcgtct agacagctgg agctgggagt ggggagagga gctgttttgg
     3061 ggttttgttt gagaggagct tgtagaaaaa tgcacgttcc tctggttggg agaaatgaga
     3121 acaccattca gacaccttac aatcaggttt gtgggtttca cacaaaacca ttcaaatcct
     3181 cccttccctt aactggccat cttcccaaga ccatgtctct ctgtacattc cgtgcaagac
     3241 tggttacttt ctcactttcc cgctgtcttg tcagacgtgt gtgtgtgtgt gtgtgtgtgt
     3301 aggtttgtgt ttttagatgg aggggcctgc agctctgctc ttgagaatgg ctctcttatg
     3361 tccacctttt ggttccttct ctggttgtcg gagctgaccc tgaattttga ctcttctggc
     3421 tggtctgagt ggggtcttcg tgaaggtgtg tacccccttg cctctgactg cctgaaatca
     3481 gtgcatccac aaaggatgcg cttggcctaa cccgggacct tggttttcag gagccccagt
     3541 ggggagagag aacatcaata cgggcgggga ggggagatgg ggagagggcg gaggctggga
     3601 gactggagac caggggcctg acatctgagg agggaggagg tggacaaggg tgtgtctgag
     3661 ccacggtctc agggcttctg caacgccgac cattgactct cactccctca ccccccggaa
     3721 aacatctggg accaatattt ttaactttgc atgtttgttt tgggggcggg ctcacccctc
     3781 tccttctgtc ctgagactgt gggcgaagct cttcgtttgg gggcgggggg aagaaagact
     3841 gttggaacca cgccaatgac gttttcgttt ctaatacttg aaatttattt ttttattatt
     3901 ttgatagcag atgtgctatt tatttattta ataagtataa gggatcctga atacggaaag
     3961 ctgtatagat tgggtcttgt tagttggttg gcttaggggc cttttacgtg tgatttctga
     4021 cttctctgtg ctctgtatac atttgtctga attaattacc cgggatgaag ctgtgccagc
     4081 tttcaaacag gggatgcctg tcggaaatgt gtatattttg cagttgccag aacaataaaa
     4141 tacctggttg aaata
//
LOCUS       XM_032619742            4174 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3),
            transcript variant X6, mRNA.
ACCESSION   XM_032619742
VERSION     XM_032619742.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4174
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4174
                     /gene="PFKFB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747467"
     CDS             213..1661
                     /gene="PFKFB3"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X6"
                     /protein_id="XP_032475633.1"
                     /db_xref="GeneID:116747467"
                     /translation="MVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYS
                     SYNFFRPDNEEAMKVRKQCALAALRDVKSYLTKEGGQIAVFDATNTTRERRHMILHFA
                     KENDFKVFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRINCYEASYQ
                     PLDPDKCDRDLSLIKVIDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGES
                     EHNLQGKIGGDSGLSSRGRKFANALSKFVEEQNLKDLKVWTSQLKSTIQTAEALQLPY
                     EQWKALNEIDAGVCEEMTYEEIKDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPV
                     IMELERQENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHAVLKLTPVAYGCRVES
                     IYLNVESVSTHRERSEDAKKGPNPLMRRNSVTPLASPEPAKKPRINSFEEHMASASAA
                     LPTCLPPEVPTQLPGQQNMKGSPSGAEASRTH"
     misc_feature    213..833
                     /gene="PFKFB3"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    840..1400
                     /gene="PFKFB3"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 cccgcactgc ccctctcctg ccgcatcgcc cctgagaccc cacgtcgccc cttccgggca
       61 ctcggcggcc gaccccacgt gccggagccg gtgcgcagag ccggcgagca gagcgcggtc
      121 gcgatacttg gaccgcaccc ggattgcgcc gcagcaagtt ctgagatcca gcctgtgggc
      181 cgaagctcac caactcccca acggtgattg tcatggtggg cctcccagcc cgggggaaga
      241 cgtacatctc caagaagctg acccgctacc tcaactggat tggcgtcccc acgaaagtgt
      301 tcaacgtggg cgagtaccgc cgggaggccg tgaagcagta cagctcctac aacttcttcc
      361 gccccgacaa tgaggaggcc atgaaagtcc gcaagcagtg tgcgctggct gccttgagag
      421 atgtcaagag ttacctgacg aaggaagggg gccaaattgc agttttcgac gccaccaata
      481 ctactagaga gaggagacac atgatccttc attttgccaa agaaaatgat ttcaaggtgt
      541 ttttcattga gtctgtgtgt gatgatccta cagttgtggc ctccaacatc atggaagtga
      601 aaatctccag cccggattac aaagactgca actcagcaga agctatggac gatttcatga
      661 agagaattaa ttgctatgaa gccagctacc agcccctcga ccccgataaa tgtgacaggg
      721 acctgtccct gatcaaggtg atcgacgtgg gccggcggtt cctggtgaac agggtccagg
      781 accacatcca gagccgcatc gtgtactacc tgatgaacat ccacgtgcag ccccgcacca
      841 tctacctgtg ccggcatggg gagagcgagc acaacctcca gggcaagatc ggcggggact
      901 cgggcctgtc cagcaggggc aggaagttcg ccaatgccct gagcaagttt gtggaggagc
      961 agaacctgaa ggacctcaag gtgtggacca gccagctgaa gagcaccatc cagacggcag
     1021 aggccctgca gctcccctac gagcagtgga aggcgctcaa cgagattgac gccggtgtct
     1081 gtgaggagat gacctacgag gagatcaaag acacctaccc cgaggagtac gcactgcgcg
     1141 agcaggacaa gtactactac cgctacccca ccggggagtc ctaccaggac ctggtccagc
     1201 gcctggagcc ggtgatcatg gagctggagc ggcaggagaa cgtgctggtc atctgccacc
     1261 aggccgtcct gcgctgcctc ctggcctact tcctggacaa gagcgcagag gagatgccct
     1321 acctgaaatg cccccttcac gctgtcctga agctgacgcc tgtcgcttac ggctgccgag
     1381 tagaatccat ctacctgaac gtggagtccg tgagcacaca tcgggagagg tcagaggatg
     1441 caaagaaggg acctaacccg ctcatgagac gcaatagtgt caccccacta gccagccccg
     1501 agcccgccaa aaagcctcgc atcaacagct ttgaggagca tatggcctct gcctccgctg
     1561 ccctgcccac ctgcctgccc ccggaggtgc ccacgcagct gcccggacaa cagaacatga
     1621 aaggctcccc gagcggcgcg gaggcctcca ggacgcactg acgcagcccc gccggcgccc
     1681 cgccctttcg ctcccgcagc tttgctcctg cccttctgtc tgcccaaggc cagcgatccc
     1741 gaggacatct cccggagggc ggcgtggagg aggggctgct gctccaggag gaccgggccc
     1801 ccgcctgcct gtgctcccct ggccttcggg ccacgcgccc cgcggacccc ttgaggcccg
     1861 ggaaggacga tgtgcagtgg aggcgggacg gcggcgcctc cccgtgggct tgttcgtctc
     1921 gtttctggac cttccctgct ggggagatga cactgccccg agtcctaacc ttaaaggggg
     1981 cctggatctc agctgctgaa ggttaaggga cactgaagac tttcagaagg ctcttggtgc
     2041 ctctcggcct ggacgttgcc tcctgcaggg agccctcggc ccgtgctagg ttggggtcgg
     2101 ccgggagagc ccggagctgg acctgctggt cagccaggca gcgaccctcc gcgcgtcgct
     2161 caccctcccg ggtgtgtgtc ctgtctctga agatggtgtg ggaccgtcta gctgcggagg
     2221 caggaggaaa tacgttgccg aaagagcacc ggggcctcgc ctcccaggga aggctcctgc
     2281 ctggattcga ggcgcctggg acacggctct cccgggactg ctggctcgtg cacttttttt
     2341 atggcagaga gtttgacctg aaagtcacac cttcaggaac ttagatgttt gcattttgcg
     2401 cccttggggt tggagctctg aaagtatgtg ggagttgggc agcctgtggg gaggggaggg
     2461 gcccctcacc ccgtaaaacg gccggggaac gagggcctgg cctcctcctt tggggccttc
     2521 atcacctcct gtgtttcccc ggtggggcca gtggcccaag ccaggcctcg ctcgcggcca
     2581 cttcctccga gagcctggct atccactgtc tcctggcagg attcagctcc gttccctacg
     2641 cttgtgtcag gcgtctcctg tgtgcccagc atggagctgg gtgccttggg agattctgga
     2701 ggagagaatg tcctcgtttg ccttcatggc acctgtggca ttttgggggc gtggttcaag
     2761 gcagggcttg tgaacacgtg gttctaaaca cctgtagttt ccgcctgcgg gttttcctct
     2821 gaggcctccg aggactgggg gagggggggt gtcgaggccc aggaggatgg attgggactc
     2881 cgcagtagag tttgtccaaa tgaccctttt caggatttct gaaagccggt gccaaaggtc
     2941 accttccctt cccttcctgc cttctgcttt ggggtcccac atctttaccc ctcttagcgt
     3001 gtgcagtagt cactgggggt agaggcaggg gcgtctagac agctggagct gggagtgggg
     3061 agaggagctg ttttggggtt ttgtttgaga ggagcttgta gaaaaatgca cgttcctctg
     3121 gttgggagaa atgagaacac cattcagaca ccttacaatc aggtttgtgg gtttcacaca
     3181 aaaccattca aatcctccct tcccttaact ggccatcttc ccaagaccat gtctctctgt
     3241 acattccgtg caagactggt tactttctca ctttcccgct gtcttgtcag acgtgtgtgt
     3301 gtgtgtgtgt gtgtgtaggt ttgtgttttt agatggaggg gcctgcagct ctgctcttga
     3361 gaatggctct cttatgtcca ccttttggtt ccttctctgg ttgtcggagc tgaccctgaa
     3421 ttttgactct tctggctggt ctgagtgggg tcttcgtgaa ggtgtgtacc cccttgcctc
     3481 tgactgcctg aaatcagtgc atccacaaag gatgcgcttg gcctaacccg ggaccttggt
     3541 tttcaggagc cccagtgggg agagagaaca tcaatacggg cggggagggg agatggggag
     3601 agggcggagg ctgggagact ggagaccagg ggcctgacat ctgaggaggg aggaggtgga
     3661 caagggtgtg tctgagccac ggtctcaggg cttctgcaac gccgaccatt gactctcact
     3721 ccctcacccc ccggaaaaca tctgggacca atatttttaa ctttgcatgt ttgttttggg
     3781 ggcgggctca cccctctcct tctgtcctga gactgtgggc gaagctcttc gtttgggggc
     3841 ggggggaaga aagactgttg gaaccacgcc aatgacgttt tcgtttctaa tacttgaaat
     3901 ttattttttt attattttga tagcagatgt gctatttatt tatttaataa gtataaggga
     3961 tcctgaatac ggaaagctgt atagattggg tcttgttagt tggttggctt aggggccttt
     4021 tacgtgtgat ttctgacttc tctgtgctct gtatacattt gtctgaatta attacccggg
     4081 atgaagctgt gccagctttc aaacagggga tgcctgtcgg aaatgtgtat attttgcagt
     4141 tgccagaaca ataaaatacc tggttgaaat aaca
//
LOCUS       XM_032619752            4664 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus
            6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3),
            transcript variant X7, mRNA.
ACCESSION   XM_032619752
VERSION     XM_032619752.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4664
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4664
                     /gene="PFKFB3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 18 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747467"
     CDS             763..2151
                     /gene="PFKFB3"
                     /codon_start=1
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X7"
                     /protein_id="XP_032475643.1"
                     /db_xref="GeneID:116747467"
                     /translation="MPLELTQSRVQKIWIPVDHRPSLPRSCGPKLTNSPTVIVMVGLP
                     ARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQC
                     ALAALRDVKSYLTKEGGQIAVFDATNTTRERRHMILHFAKENDFKVFFIESVCDDPTV
                     VASNIMEVKISSPDYKDCNSAEAMDDFMKRINCYEASYQPLDPDKCDRDLSLIKVIDV
                     GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGESEHNLQGKIGGDSGLSSRGR
                     KFANALSKFVEEQNLKDLKVWTSQLKSTIQTAEALQLPYEQWKALNEIDAGVCEEMTY
                     EEIKDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVL
                     RCLLAYFLDKSAEEMPYLKCPLHAVLKLTPVAYGCRVESIYLNVESVSTHRERSENMK
                     GSPSGAEASRTH"
     misc_feature    838..1500
                     /gene="PFKFB3"
                     /note="6-phosphofructo-2-kinase; Region: 6PF2K; pfam01591"
                     /db_xref="CDD:396253"
     misc_feature    1507..2067
                     /gene="PFKFB3"
                     /note="Histidine phosphatase superfamily (branch 1);
                     Region: His_Phos_1; pfam00300"
                     /db_xref="CDD:459751"
ORIGIN      
        1 gtatggggtc ccattcccag agagaccgag tacgcagtat gcattaagca tgccaggtga
       61 ttcggcagag gggcttcgtg gaccacagtg gacggtgctg tttctttcct cccagcgcag
      121 ttgagttgac tattctggga ggctgcgcag gtcgctttta ggggatgata ggaggaggct
      181 cacggagtag cactttcagc cagggctggt ttagggcgtt atccggggga cctcagtagc
      241 cgggcgcgcc agtgtcgccg gcctgcaggg ggcgccagca ggctgtctcc tggctgggcc
      301 accctccttc cacgtgaaag ggggatggaa cacgaggaat gcgtccccgc cccggggctg
      361 acgtgtgcgt ctctgccggc ccggattctt aaaagcccgg gaggagcgcc gggcatccca
      421 gcagagccag agaggaggtg agttgatgtg gaccgcggcg cactcgagcc agagcacagg
      481 gaccgcggct gtcacggcgc tccgagcatc ccggggcttc ccgagcggaa gagtccatcc
      541 ctgcgggagc tgcgggtgca gccccagccc tcccgctcct ctctgagagc ctcacgcctc
      601 gggcgagcgt ccgtgattta gcacaaagca cgtttccaaa aagccgcgct ctcacgcacg
      661 caccccctcc cccctttgtt tcggggggtc gccagaccgc tctcctcccc aagtccgaat
      721 tcttcagaag gggcggaggg ccgccgagtc tcggctgaga agatgcccct ggagctgact
      781 cagagccggg tgcagaagat ctggatcccg gtcgaccacc gcccctcgtt gcccagatcc
      841 tgtgggccga agctcaccaa ctccccaacg gtgattgtca tggtgggcct cccagcccgg
      901 gggaagacgt acatctccaa gaagctgacc cgctacctca actggattgg cgtccccacg
      961 aaagtgttca acgtgggcga gtaccgccgg gaggccgtga agcagtacag ctcctacaac
     1021 ttcttccgcc ccgacaatga ggaggccatg aaagtccgca agcagtgtgc gctggctgcc
     1081 ttgagagatg tcaagagtta cctgacgaag gaagggggcc aaattgcagt tttcgacgcc
     1141 accaatacta ctagagagag gagacacatg atccttcatt ttgccaaaga aaatgatttc
     1201 aaggtgtttt tcattgagtc tgtgtgtgat gatcctacag ttgtggcctc caacatcatg
     1261 gaagtgaaaa tctccagccc ggattacaaa gactgcaact cagcagaagc tatggacgat
     1321 ttcatgaaga gaattaattg ctatgaagcc agctaccagc ccctcgaccc cgataaatgt
     1381 gacagggacc tgtccctgat caaggtgatc gacgtgggcc ggcggttcct ggtgaacagg
     1441 gtccaggacc acatccagag ccgcatcgtg tactacctga tgaacatcca cgtgcagccc
     1501 cgcaccatct acctgtgccg gcatggggag agcgagcaca acctccaggg caagatcggc
     1561 ggggactcgg gcctgtccag caggggcagg aagttcgcca atgccctgag caagtttgtg
     1621 gaggagcaga acctgaagga cctcaaggtg tggaccagcc agctgaagag caccatccag
     1681 acggcagagg ccctgcagct cccctacgag cagtggaagg cgctcaacga gattgacgcc
     1741 ggtgtctgtg aggagatgac ctacgaggag atcaaagaca cctaccccga ggagtacgca
     1801 ctgcgcgagc aggacaagta ctactaccgc taccccaccg gggagtccta ccaggacctg
     1861 gtccagcgcc tggagccggt gatcatggag ctggagcggc aggagaacgt gctggtcatc
     1921 tgccaccagg ccgtcctgcg ctgcctcctg gcctacttcc tggacaagag cgcagaggag
     1981 atgccctacc tgaaatgccc ccttcacgct gtcctgaagc tgacgcctgt cgcttacggc
     2041 tgccgagtag aatccatcta cctgaacgtg gagtccgtga gcacacatcg ggagaggtca
     2101 gagaacatga aaggctcccc gagcggcgcg gaggcctcca ggacgcactg acgcagcccc
     2161 gccggcgccc cgccctttcg ctcccgcagc tttgctcctg cccttctgtc tgcccaaggc
     2221 cagcgatccc gaggacatct cccggagggc ggcgtggagg aggggctgct gctccaggag
     2281 gaccgggccc ccgcctgcct gtgctcccct ggccttcggg ccacgcgccc cgcggacccc
     2341 ttgaggcccg ggaaggacga tgtgcagtgg aggcgggacg gcggcgcctc cccgtgggct
     2401 tgttcgtctc gtttctggac cttccctgct ggggagatga cactgccccg agtcctaacc
     2461 ttaaaggggg cctggatctc agctgctgaa ggttaaggga cactgaagac tttcagaagg
     2521 ctcttggtgc ctctcggcct ggacgttgcc tcctgcaggg agccctcggc ccgtgctagg
     2581 ttggggtcgg ccgggagagc ccggagctgg acctgctggt cagccaggca gcgaccctcc
     2641 gcgcgtcgct caccctcccg ggtgtgtgtc ctgtctctga agatggtgtg ggaccgtcta
     2701 gctgcggagg caggaggaaa tacgttgccg aaagagcacc ggggcctcgc ctcccaggga
     2761 aggctcctgc ctggattcga ggcgcctggg acacggctct cccgggactg ctggctcgtg
     2821 cacttttttt atggcagaga gtttgacctg aaagtcacac cttcaggaac ttagatgttt
     2881 gcattttgcg cccttggggt tggagctctg aaagtatgtg ggagttgggc agcctgtggg
     2941 gaggggaggg gcccctcacc ccgtaaaacg gccggggaac gagggcctgg cctcctcctt
     3001 tggggccttc atcacctcct gtgtttcccc ggtggggcca gtggcccaag ccaggcctcg
     3061 ctcgcggcca cttcctccga gagcctggct atccactgtc tcctggcagg attcagctcc
     3121 gttccctacg cttgtgtcag gcgtctcctg tgtgcccagc atggagctgg gtgccttggg
     3181 agattctgga ggagagaatg tcctcgtttg ccttcatggc acctgtggca ttttgggggc
     3241 gtggttcaag gcagggcttg tgaacacgtg gttctaaaca cctgtagttt ccgcctgcgg
     3301 gttttcctct gaggcctccg aggactgggg gagggggggt gtcgaggccc aggaggatgg
     3361 attgggactc cgcagtagag tttgtccaaa tgaccctttt caggatttct gaaagccggt
     3421 gccaaaggtc accttccctt cccttcctgc cttctgcttt ggggtcccac atctttaccc
     3481 ctcttagcgt gtgcagtagt cactgggggt agaggcaggg gcgtctagac agctggagct
     3541 gggagtgggg agaggagctg ttttggggtt ttgtttgaga ggagcttgta gaaaaatgca
     3601 cgttcctctg gttgggagaa atgagaacac cattcagaca ccttacaatc aggtttgtgg
     3661 gtttcacaca aaaccattca aatcctccct tcccttaact ggccatcttc ccaagaccat
     3721 gtctctctgt acattccgtg caagactggt tactttctca ctttcccgct gtcttgtcag
     3781 acgtgtgtgt gtgtgtgtgt gtgtgtaggt ttgtgttttt agatggaggg gcctgcagct
     3841 ctgctcttga gaatggctct cttatgtcca ccttttggtt ccttctctgg ttgtcggagc
     3901 tgaccctgaa ttttgactct tctggctggt ctgagtgggg tcttcgtgaa ggtgtgtacc
     3961 cccttgcctc tgactgcctg aaatcagtgc atccacaaag gatgcgcttg gcctaacccg
     4021 ggaccttggt tttcaggagc cccagtgggg agagagaaca tcaatacggg cggggagggg
     4081 agatggggag agggcggagg ctgggagact ggagaccagg ggcctgacat ctgaggaggg
     4141 aggaggtgga caagggtgtg tctgagccac ggtctcaggg cttctgcaac gccgaccatt
     4201 gactctcact ccctcacccc ccggaaaaca tctgggacca atatttttaa ctttgcatgt
     4261 ttgttttggg ggcgggctca cccctctcct tctgtcctga gactgtgggc gaagctcttc
     4321 gtttgggggc ggggggaaga aagactgttg gaaccacgcc aatgacgttt tcgtttctaa
     4381 tacttgaaat ttattttttt attattttga tagcagatgt gctatttatt tatttaataa
     4441 gtataaggga tcctgaatac ggaaagctgt atagattggg tcttgttagt tggttggctt
     4501 aggggccttt tacgtgtgat ttctgacttc tctgtgctct gtatacattt gtctgaatta
     4561 attacccggg atgaagctgt gccagctttc aaacagggga tgcctgtcgg aaatgtgtat
     4621 attttgcagt tgccagaaca ataaaatacc tggttgaaat aaca
//
LOCUS       XM_032619766            6248 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mannosidase alpha class 2A member 2
            (MAN2A2), transcript variant X1, mRNA.
ACCESSION   XM_032619766
VERSION     XM_032619766.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6248
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6248
                     /gene="MAN2A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 21 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747493"
     CDS             357..3809
                     /gene="MAN2A2"
                     /codon_start=1
                     /product="alpha-mannosidase 2x isoform X1"
                     /protein_id="XP_032475657.1"
                     /db_xref="GeneID:116747493"
                     /translation="MKLKKQVTVCGAAIFCVAVFSLYLMLDRVQHDPTRHQNGGNFPR
                     SQISVLQNRIEQLEQLLEENHEIISHIKDSVLELTANVEGPPALLPYYMSNGSWVVPP
                     EPRPSFFSISPQDCQFALGVRGQKPELQMLTVSEELPFDNVDGGVWKQGFEISYSPHD
                     WDTEDLQVFVVPHSHNDPGWLKTFDKYYTEQTQHILNNMVSKLQEDPRRRFIWAEVSF
                     FAKWWDNINAQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALVDQLIEGHQWLEK
                     NLGATPRSGWAVDPFGYSPTMPYLLRRANLTSMLIQRVHYAIKKHFAATHSLEFMWRQ
                     TWDSDSSTDIFCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRINCPWKVPPRAIT
                     ETNVAERAGLLLDQYRKKSRLFRSNVLLVPLGDDFRYDKPQEWDAQFFNYQRLFDFLN
                     SKPDLHVQAQFGTLSDYFDALYKRTGVEPGAQPPGFPVLSGDFFSYADREDHYWTGYY
                     TSRPFYKSLDRVLEAHLRGAEILYSLAVAHARRSGVASQYPLSNFALLTEARRTLGLF
                     QHHDAITGTAKEAVVVDYGIRLLRSLVNLKQVIINAAHYLVLGDKKSYHFDPESPFLQ
                     MDDTRLNHDALPERTVIQLDSSPRYVVLFNPLEQERLSVVSLLVSSPRVRVLTEEGQP
                     LAVQVSAHWSSATDMVPDVYQVSVPVRLPALGLGVLQLQLGLDGPRTLPSSVRVYLHG
                     RQLSVSRHEAFPLRVIDSGTSDFALSNRYMQVWFSGLTGLLKSIRRVDEEQEQRVGME
                     FLIYGTRSSKDKSGAYLFLPDGEAKPYIPKDPPVLRITEGPFFSEVVAYYEHVHQVVR
                     LYNLPGVEGLSLDVSSLVDIRDCVNKELALRLHTDIDSQGTFFTDLNGFQVQPRRYRK
                     KLPLQANFYPMPVMACLQDAQSRLTLHAAQALGVSSLHDGQLEVILDRRLMQDDNRGL
                     GQGLKDNKRTCNHFRLLLERRTLGREVQDGPSTSYPSLLSHLTSMYLNTPVLALPVAK
                     RQPPGPALCSFRPLASSLPCDFHLLNLRTLQAEDDSLPSAETALLLHRKGFDCGLEAK
                     NLGFNCTTSQGKVALGSLFRGLDVVFLQPTSLTLLYPLASPSNSTDIYLEPMEIATFR
                     LRLG"
     misc_feature    762..3803
                     /gene="MAN2A2"
                     /note="alpha-mannosidase; Region: PLN02701"
                     /db_xref="CDD:178304"
ORIGIN      
        1 ggtttggtag ctgttgggtg tgtgacttgg ggaagaggaa gagagatcag gaagatatac
       61 aggcttcttg accagatggt ggtgttattt ctgaattagg atcccaggca gaggagcaga
      121 gctgcaggaa gcatgctcca cctactttgg cctggactca gcctcccagg gctaaaaata
      181 ttgcccggag gctcctgagc ggaataagat cgcgctaaat agagcacaac cctgcagagg
      241 cgacagagct cctcagcccg agggctggag gaagactcct gagctgccgc tcccgccgcc
      301 gctcagccgg cagctagctg tctccctccg cccagcaggt gtgtgtggag gccattatga
      361 agctgaaaaa gcaggtgaca gtgtgtgggg ctgccatctt ctgtgtggct gtcttctcac
      421 tctacctcat gctggatcga gtgcagcatg atcccacccg acaccagaac ggtgggaact
      481 tcccccggag tcagatttct gtgctccaga accgcattga acagctggag cagctgttgg
      541 aggagaatca tgagatcatc agccacatca aggactctgt gctggagctg acggccaacg
      601 tggagggccc acctgccctg ctgccgtact atatgtccaa tggctcctgg gtggtgccac
      661 cagagccccg acccagcttc ttctccatct cccctcaaga ctgccaattt gctttggggg
      721 tccggggcca gaaaccagag ctgcagatgc tgactgtatc agaggagtta ccatttgaca
      781 acgtggatgg cggcgtgtgg aagcaaggct ttgagatctc ttatagcccg cacgactggg
      841 acactgaaga cctgcaggtg tttgtggtcc ctcactctca caatgaccca ggctggctca
      901 agacctttga caagtactac acagagcaga cacagcacat tctcaacaac atggtgtcca
      961 agctgcaaga ggacccccgg cggcgcttca tctgggcgga agtctccttc ttcgccaagt
     1021 ggtgggacaa catcaatgcc caaaagagag cagcagtccg aaggctggtg ggaaacgggc
     1081 agctggagat tgcaacagga ggctgggtaa tgccggatga ggccaactcc cactactttg
     1141 cattggttga ccagctcatt gagggacacc agtggctgga gaaaaacctc ggtgcaaccc
     1201 cgcgctcagg ctgggcagtg gacccctttg gatacagccc caccatgcct tacctgctgc
     1261 gccgtgccaa cctgaccagc atgctgattc agagggtaca ttatgctatc aagaagcact
     1321 ttgctgccac ccacagcctg gagttcatgt ggaggcagac ctgggattcg gactccagca
     1381 cagacatctt ctgccacatg atgcctttct acagctatga cgtcccccat acatgtggcc
     1441 cggatcccaa gatctgctgc cagtttgatt tcaagcgctt gcctgggggg cgcatcaact
     1501 gcccttggaa ggtgccaccc cgggctatca cagagacaaa tgtggccgag agggcaggcc
     1561 tgctcctgga ccagtacagg aagaagtccc ggctcttccg aagcaacgtc ctcctggtgc
     1621 cgctgggcga tgacttccga tatgacaagc cccaggagtg ggatgcccag ttcttcaact
     1681 accagcggct cttcgacttc cttaacagca agcctgatct ccacgtgcag gcccagtttg
     1741 gcaccctctc cgactatttt gatgctctat ataagaggac aggggtggag ccaggggccc
     1801 agcctccagg gtttcctgtg ctgagtgggg atttcttctc ctacgcggac cgggaggacc
     1861 attactggac aggctattac acttcacggc ctttctacaa gagcttggac cgtgtcctgg
     1921 aagcgcacct gcggggggca gagattctgt acagcctggc tgtggctcat gcccggcgct
     1981 ctggagtggc cagccagtac ccgctctcaa actttgccct tctgacggaa gctcggcgca
     2041 cactgggact cttccagcac cacgacgcta tcactggcac tgccaaggag gcagttgttg
     2101 tggactatgg gatcaggctt ctgcgctccc ttgtcaacct gaagcaggtc atcattaacg
     2161 cagctcacta tctggtgctg ggggacaaga aaagctacca ctttgaccct gagtcaccct
     2221 tcctgcaaat ggatgacacc cgcttaaatc acgatgccct accagagcgc acagtgatcc
     2281 agctggattc ctcacccagg tacgtggtgc tgttcaaccc actggaacag gaacggctca
     2341 gcgtggtgtc ccttctggtc agctcacccc gggtgcgggt ccttacagag gagggtcagc
     2401 ccctggctgt gcaggtcagc gcgcattgga gctctgccac tgacatggtc cctgacgtct
     2461 accaggtgtc tgtgcccgtc cgcctgccgg cgctgggcct gggcgtgctg cagctgcagc
     2521 tgggtctgga cgggccccgc accctgccct cctccgtgcg tgtctacctg catgggcggc
     2581 agctgtccgt cagcaggcac gaggcgttcc ctctacgcgt cattgactct ggcaccagcg
     2641 acttcgccct cagcaaccgc tatatgcagg tctggttctc aggcctcact gggctcctca
     2701 agagcatccg aagggtggac gaggagcagg agcagcgggt gggcatggag ttcctcatct
     2761 atggcacccg ctcgtccaaa gacaagagtg gagcctacct cttcctgcct gatggcgagg
     2821 ccaagcccta catccccaag gaccctcccg tgctgcgcat cacggaaggc cctttcttct
     2881 cagaggtggt ggcctactat gagcacgttc accaggtagt ccggctttat aacctgccag
     2941 gggtggaggg gctgtctctg gacgtgtcat ccctggtgga catccgggac tgcgtcaaca
     3001 aggagctggc cctgcgcctc cacacagaca ttgacagcca gggcaccttc ttcacggacc
     3061 tcaatggctt tcaggtgcag ccccggcggt atcggaagaa gctgcccctg caggccaact
     3121 tctaccccat gccggtcatg gcctgcctcc aggacgcaca gagccgcctc acactgcacg
     3181 ctgcccaggc cctgggcgtc tccagcctcc acgatggcca gctggaggtg atcttggacc
     3241 ggcgactaat gcaggacgac aaccgaggcc tgggccaagg gctcaaggac aacaagagaa
     3301 cctgcaacca tttccgtctc ctgttggaac ggcgaaccct gggcagggag gtccaagatg
     3361 gcccctctac cagctacccg tccctcctca gtcacctgac ttccatgtac ctgaacaccc
     3421 ctgtgctcgc cctgcccgtg gccaagaggc agcccccagg ccctgctctg tgctcatttc
     3481 gtcctctggc ttcctctctg ccctgtgact tccacctgct caacctgcgg acgctccagg
     3541 cagaggatga tagcttgccc tcagccgaaa ctgcgctcct cttacaccgc aagggttttg
     3601 actgtggcct cgaggccaag aacttgggct tcaactgcac cacaagccaa ggcaaggtgg
     3661 ccctgggaag cctcttccgt ggcttggatg tggttttcct gcagccaacc tccttgacat
     3721 tgctgtaccc cttggcctcg ccctccaaca gcactgacat ctatttggag cccatggaga
     3781 tcgccacctt tcgcctccgc ctgggctagg gcttcttgtg gcctgaagag aaagttcatc
     3841 cacagagacg gccttttcac ataagatcgg gttggacatg ccaccctggg tctcctgtcc
     3901 tgatctacct ctcagaactg tgacagactg ggctctgccc tcattttctc tttatcgttg
     3961 cttctgtgtt cgggggcaac ccacagccca gtgttgggtg gttagggcag gcgccagtga
     4021 gttgtaggag agaaggccct tggtcagagt gggtggtgcc agcctctgct ttgggttgtg
     4081 cgtgcccacc tagttgggtg caggctcaag cacccatcct ttcccttgaa tgggatggag
     4141 gagaagcagg ggagcctgag tgggtaatag cccagcgtca gggtcacagt agtcaagagc
     4201 tggctctcgg ggagtcctgt ggttgtgtaa gggctacatg tcctggtgtg acaggcagga
     4261 gcagagcact gccaggagga gggggctggg gaccgcgagt tagcagtggg gtggaggagt
     4321 agcaggaatc gctgctttct gtgacggctc cactcttagt gctccctgac cctcacgccc
     4381 tggccaggcg ctgcagtgtg gcaggaagga ctcatgaagc ctgtcatgac cggagctcat
     4441 gggacacttc aggtaccaaa accccatctc agactgggca cttggtctgt gtgttgattt
     4501 gtggaatggt ggcagaggcc accctacttg actcctcttt ggttcctgca ctctgtacac
     4561 cactgtcccg aagagctgct tcccatcatg ggggcgtttg atcgggcttg tttcctttcc
     4621 ctggaaagaa agtgaagcct ccagcttgcg gtgggcaact cgagaaagct ttcgtcatca
     4681 ttcctacagt cagccctgaa gcttcgcctt gttcatcctt ccacagaagt attcacttcc
     4741 tggtgcgggg actagggaga tgtacactaa attaggaggc accgtggctg ctcattagcc
     4801 ttcactgcag cttcgattat tagaaaaaaa tttatgatag tctctagaga tgctgaaacg
     4861 atatttggta aaatttaaaa tctatccctt attaaactct tagtaagtta agattacaaa
     4921 gaaacatcct aacctagata aaggtgtctc tatctgaaac caacagtcag tggcattcta
     4981 aagtgtcaga taccaccggc attcccagta aagtcagaaa tgagtcaagg acatactatt
     5041 atttagctgt gttctggcac tactaaaccc ctgcagtgtg gcagatgaga gagatgaggg
     5101 agggttacag aacgcccaac ctgtacaatc cagcaggatc agctgaagac cttaacagag
     5161 caaacaaggc acatcacgtt tctataaaga ttctggttct ctccagatca gctcataaat
     5221 tcaatgtatt ccagtgagat tggatacttt ttggaattta atgggttcta acgttcattt
     5281 ggaagactaa gtgtgtgaga ataccaagaa aattctgaat gacagtgagt ccggggcggt
     5341 ggtgctcagg tgggtaaaag acacttgtcc tacgagattt cccagggtac tctcgaccga
     5401 ccatgagttc agtcagtgtg acctggagtg ggatcagact gctggaccca aagggagagc
     5461 ctagcatcag acccaggtgt gaggggattt ggtacaggac ccaaggagta ttttaagtgg
     5521 gaaaaagatg gactatttaa taaagagtac tttaagataa ctgcctatct attaaagtaa
     5581 gagttctcta cctcacagtt tccacaaaaa ttagctctag agagaaaaaa caaaaatatt
     5641 acagaattac tgaggaaaat ataggatatt tttatacctt tggtgtggga aggtcttttc
     5701 taaacaacat gaaacctaaa agatataata agggagaaga taaacagatt ttaccaccaa
     5761 aaatatattg aaagtttgca tatgatggaa accaccaagg ttaaaacaca aatgacagat
     5821 ttgggagaaa atatttgcag cacttcaaaa attggtgagt acagttactt taggagaata
     5881 gcttgctttg ggctccttgg agcaagtcac tggggcctgc taagcagcga cctaaagatt
     5941 cagcagtgac cagctgagtt cttccaggtc atccaagggc gttgctgcca gcaccaggcc
     6001 agggcgcgtg gaatcctgtc tacatcatag tgaaagcatg aagtttatca gtgtgaagtg
     6061 cttagcacag tgcctggtac gtataagagc tcagtaaata tgaactataa tcgtattagt
     6121 aaaggattct gagcggttac actatagcag gcgttatttg caagtataat gtaatttgta
     6181 atcaaatgat aagggagaat ctgtgaaccc ccgaggaaat tagcagaata aaggctgttc
     6241 tctctgga
//
LOCUS       XM_032619775            6416 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mannosidase alpha class 2A member 2
            (MAN2A2), transcript variant X2, mRNA.
ACCESSION   XM_032619775
VERSION     XM_032619775.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6416
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6416
                     /gene="MAN2A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 21 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747493"
     CDS             525..3977
                     /gene="MAN2A2"
                     /codon_start=1
                     /product="alpha-mannosidase 2x isoform X1"
                     /protein_id="XP_032475666.1"
                     /db_xref="GeneID:116747493"
                     /translation="MKLKKQVTVCGAAIFCVAVFSLYLMLDRVQHDPTRHQNGGNFPR
                     SQISVLQNRIEQLEQLLEENHEIISHIKDSVLELTANVEGPPALLPYYMSNGSWVVPP
                     EPRPSFFSISPQDCQFALGVRGQKPELQMLTVSEELPFDNVDGGVWKQGFEISYSPHD
                     WDTEDLQVFVVPHSHNDPGWLKTFDKYYTEQTQHILNNMVSKLQEDPRRRFIWAEVSF
                     FAKWWDNINAQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALVDQLIEGHQWLEK
                     NLGATPRSGWAVDPFGYSPTMPYLLRRANLTSMLIQRVHYAIKKHFAATHSLEFMWRQ
                     TWDSDSSTDIFCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRINCPWKVPPRAIT
                     ETNVAERAGLLLDQYRKKSRLFRSNVLLVPLGDDFRYDKPQEWDAQFFNYQRLFDFLN
                     SKPDLHVQAQFGTLSDYFDALYKRTGVEPGAQPPGFPVLSGDFFSYADREDHYWTGYY
                     TSRPFYKSLDRVLEAHLRGAEILYSLAVAHARRSGVASQYPLSNFALLTEARRTLGLF
                     QHHDAITGTAKEAVVVDYGIRLLRSLVNLKQVIINAAHYLVLGDKKSYHFDPESPFLQ
                     MDDTRLNHDALPERTVIQLDSSPRYVVLFNPLEQERLSVVSLLVSSPRVRVLTEEGQP
                     LAVQVSAHWSSATDMVPDVYQVSVPVRLPALGLGVLQLQLGLDGPRTLPSSVRVYLHG
                     RQLSVSRHEAFPLRVIDSGTSDFALSNRYMQVWFSGLTGLLKSIRRVDEEQEQRVGME
                     FLIYGTRSSKDKSGAYLFLPDGEAKPYIPKDPPVLRITEGPFFSEVVAYYEHVHQVVR
                     LYNLPGVEGLSLDVSSLVDIRDCVNKELALRLHTDIDSQGTFFTDLNGFQVQPRRYRK
                     KLPLQANFYPMPVMACLQDAQSRLTLHAAQALGVSSLHDGQLEVILDRRLMQDDNRGL
                     GQGLKDNKRTCNHFRLLLERRTLGREVQDGPSTSYPSLLSHLTSMYLNTPVLALPVAK
                     RQPPGPALCSFRPLASSLPCDFHLLNLRTLQAEDDSLPSAETALLLHRKGFDCGLEAK
                     NLGFNCTTSQGKVALGSLFRGLDVVFLQPTSLTLLYPLASPSNSTDIYLEPMEIATFR
                     LRLG"
     misc_feature    930..3971
                     /gene="MAN2A2"
                     /note="alpha-mannosidase; Region: PLN02701"
                     /db_xref="CDD:178304"
ORIGIN      
        1 ccgctctgcc cggcggcctc cagcgtgggg aaccggcgcc ggcggcctgg cctctgtggg
       61 agcgactggt gggcggacgc ccgcctttgc ctgcgtcgct gcctccgcgc gggcagccct
      121 acccggggat gtgaggggcg cagctcggcc ggcggggccc ggagcggcgc ggaagccggc
      181 cgcagacggt aacgcgctgg gcgggcgcgg gcagggctcc ggttgccccg gccgaggccg
      241 ggcttgagcg gcaggagcgc gtgcggcgct ttggagtcgg aggcggtccg agctcccgca
      301 cggctccacc tactttggcc tggactcagc ctcccagggc taaaaatatt gcccggaggc
      361 tcctgagcgg aataagatcg cgctaaatag agcacaaccc tgcagaggcg acagagctcc
      421 tcagcccgag ggctggagga agactcctga gctgccgctc ccgccgccgc tcagccggca
      481 gctagctgtc tccctccgcc cagcaggtgt gtgtggaggc cattatgaag ctgaaaaagc
      541 aggtgacagt gtgtggggct gccatcttct gtgtggctgt cttctcactc tacctcatgc
      601 tggatcgagt gcagcatgat cccacccgac accagaacgg tgggaacttc ccccggagtc
      661 agatttctgt gctccagaac cgcattgaac agctggagca gctgttggag gagaatcatg
      721 agatcatcag ccacatcaag gactctgtgc tggagctgac ggccaacgtg gagggcccac
      781 ctgccctgct gccgtactat atgtccaatg gctcctgggt ggtgccacca gagccccgac
      841 ccagcttctt ctccatctcc cctcaagact gccaatttgc tttgggggtc cggggccaga
      901 aaccagagct gcagatgctg actgtatcag aggagttacc atttgacaac gtggatggcg
      961 gcgtgtggaa gcaaggcttt gagatctctt atagcccgca cgactgggac actgaagacc
     1021 tgcaggtgtt tgtggtccct cactctcaca atgacccagg ctggctcaag acctttgaca
     1081 agtactacac agagcagaca cagcacattc tcaacaacat ggtgtccaag ctgcaagagg
     1141 acccccggcg gcgcttcatc tgggcggaag tctccttctt cgccaagtgg tgggacaaca
     1201 tcaatgccca aaagagagca gcagtccgaa ggctggtggg aaacgggcag ctggagattg
     1261 caacaggagg ctgggtaatg ccggatgagg ccaactccca ctactttgca ttggttgacc
     1321 agctcattga gggacaccag tggctggaga aaaacctcgg tgcaaccccg cgctcaggct
     1381 gggcagtgga cccctttgga tacagcccca ccatgcctta cctgctgcgc cgtgccaacc
     1441 tgaccagcat gctgattcag agggtacatt atgctatcaa gaagcacttt gctgccaccc
     1501 acagcctgga gttcatgtgg aggcagacct gggattcgga ctccagcaca gacatcttct
     1561 gccacatgat gcctttctac agctatgacg tcccccatac atgtggcccg gatcccaaga
     1621 tctgctgcca gtttgatttc aagcgcttgc ctggggggcg catcaactgc ccttggaagg
     1681 tgccaccccg ggctatcaca gagacaaatg tggccgagag ggcaggcctg ctcctggacc
     1741 agtacaggaa gaagtcccgg ctcttccgaa gcaacgtcct cctggtgccg ctgggcgatg
     1801 acttccgata tgacaagccc caggagtggg atgcccagtt cttcaactac cagcggctct
     1861 tcgacttcct taacagcaag cctgatctcc acgtgcaggc ccagtttggc accctctccg
     1921 actattttga tgctctatat aagaggacag gggtggagcc aggggcccag cctccagggt
     1981 ttcctgtgct gagtggggat ttcttctcct acgcggaccg ggaggaccat tactggacag
     2041 gctattacac ttcacggcct ttctacaaga gcttggaccg tgtcctggaa gcgcacctgc
     2101 ggggggcaga gattctgtac agcctggctg tggctcatgc ccggcgctct ggagtggcca
     2161 gccagtaccc gctctcaaac tttgcccttc tgacggaagc tcggcgcaca ctgggactct
     2221 tccagcacca cgacgctatc actggcactg ccaaggaggc agttgttgtg gactatggga
     2281 tcaggcttct gcgctccctt gtcaacctga agcaggtcat cattaacgca gctcactatc
     2341 tggtgctggg ggacaagaaa agctaccact ttgaccctga gtcacccttc ctgcaaatgg
     2401 atgacacccg cttaaatcac gatgccctac cagagcgcac agtgatccag ctggattcct
     2461 cacccaggta cgtggtgctg ttcaacccac tggaacagga acggctcagc gtggtgtccc
     2521 ttctggtcag ctcaccccgg gtgcgggtcc ttacagagga gggtcagccc ctggctgtgc
     2581 aggtcagcgc gcattggagc tctgccactg acatggtccc tgacgtctac caggtgtctg
     2641 tgcccgtccg cctgccggcg ctgggcctgg gcgtgctgca gctgcagctg ggtctggacg
     2701 ggccccgcac cctgccctcc tccgtgcgtg tctacctgca tgggcggcag ctgtccgtca
     2761 gcaggcacga ggcgttccct ctacgcgtca ttgactctgg caccagcgac ttcgccctca
     2821 gcaaccgcta tatgcaggtc tggttctcag gcctcactgg gctcctcaag agcatccgaa
     2881 gggtggacga ggagcaggag cagcgggtgg gcatggagtt cctcatctat ggcacccgct
     2941 cgtccaaaga caagagtgga gcctacctct tcctgcctga tggcgaggcc aagccctaca
     3001 tccccaagga ccctcccgtg ctgcgcatca cggaaggccc tttcttctca gaggtggtgg
     3061 cctactatga gcacgttcac caggtagtcc ggctttataa cctgccaggg gtggaggggc
     3121 tgtctctgga cgtgtcatcc ctggtggaca tccgggactg cgtcaacaag gagctggccc
     3181 tgcgcctcca cacagacatt gacagccagg gcaccttctt cacggacctc aatggctttc
     3241 aggtgcagcc ccggcggtat cggaagaagc tgcccctgca ggccaacttc taccccatgc
     3301 cggtcatggc ctgcctccag gacgcacaga gccgcctcac actgcacgct gcccaggccc
     3361 tgggcgtctc cagcctccac gatggccagc tggaggtgat cttggaccgg cgactaatgc
     3421 aggacgacaa ccgaggcctg ggccaagggc tcaaggacaa caagagaacc tgcaaccatt
     3481 tccgtctcct gttggaacgg cgaaccctgg gcagggaggt ccaagatggc ccctctacca
     3541 gctacccgtc cctcctcagt cacctgactt ccatgtacct gaacacccct gtgctcgccc
     3601 tgcccgtggc caagaggcag cccccaggcc ctgctctgtg ctcatttcgt cctctggctt
     3661 cctctctgcc ctgtgacttc cacctgctca acctgcggac gctccaggca gaggatgata
     3721 gcttgccctc agccgaaact gcgctcctct tacaccgcaa gggttttgac tgtggcctcg
     3781 aggccaagaa cttgggcttc aactgcacca caagccaagg caaggtggcc ctgggaagcc
     3841 tcttccgtgg cttggatgtg gttttcctgc agccaacctc cttgacattg ctgtacccct
     3901 tggcctcgcc ctccaacagc actgacatct atttggagcc catggagatc gccacctttc
     3961 gcctccgcct gggctagggc ttcttgtggc ctgaagagaa agttcatcca cagagacggc
     4021 cttttcacat aagatcgggt tggacatgcc accctgggtc tcctgtcctg atctacctct
     4081 cagaactgtg acagactggg ctctgccctc attttctctt tatcgttgct tctgtgttcg
     4141 ggggcaaccc acagcccagt gttgggtggt tagggcaggc gccagtgagt tgtaggagag
     4201 aaggcccttg gtcagagtgg gtggtgccag cctctgcttt gggttgtgcg tgcccaccta
     4261 gttgggtgca ggctcaagca cccatccttt cccttgaatg ggatggagga gaagcagggg
     4321 agcctgagtg ggtaatagcc cagcgtcagg gtcacagtag tcaagagctg gctctcgggg
     4381 agtcctgtgg ttgtgtaagg gctacatgtc ctggtgtgac aggcaggagc agagcactgc
     4441 caggaggagg gggctgggga ccgcgagtta gcagtggggt ggaggagtag caggaatcgc
     4501 tgctttctgt gacggctcca ctcttagtgc tccctgaccc tcacgccctg gccaggcgct
     4561 gcagtgtggc aggaaggact catgaagcct gtcatgaccg gagctcatgg gacacttcag
     4621 gtaccaaaac cccatctcag actgggcact tggtctgtgt gttgatttgt ggaatggtgg
     4681 cagaggccac cctacttgac tcctctttgg ttcctgcact ctgtacacca ctgtcccgaa
     4741 gagctgcttc ccatcatggg ggcgtttgat cgggcttgtt tcctttccct ggaaagaaag
     4801 tgaagcctcc agcttgcggt gggcaactcg agaaagcttt cgtcatcatt cctacagtca
     4861 gccctgaagc ttcgccttgt tcatccttcc acagaagtat tcacttcctg gtgcggggac
     4921 tagggagatg tacactaaat taggaggcac cgtggctgct cattagcctt cactgcagct
     4981 tcgattatta gaaaaaaatt tatgatagtc tctagagatg ctgaaacgat atttggtaaa
     5041 atttaaaatc tatcccttat taaactctta gtaagttaag attacaaaga aacatcctaa
     5101 cctagataaa ggtgtctcta tctgaaacca acagtcagtg gcattctaaa gtgtcagata
     5161 ccaccggcat tcccagtaaa gtcagaaatg agtcaaggac atactattat ttagctgtgt
     5221 tctggcacta ctaaacccct gcagtgtggc agatgagaga gatgagggag ggttacagaa
     5281 cgcccaacct gtacaatcca gcaggatcag ctgaagacct taacagagca aacaaggcac
     5341 atcacgtttc tataaagatt ctggttctct ccagatcagc tcataaattc aatgtattcc
     5401 agtgagattg gatacttttt ggaatttaat gggttctaac gttcatttgg aagactaagt
     5461 gtgtgagaat accaagaaaa ttctgaatga cagtgagtcc ggggcggtgg tgctcaggtg
     5521 ggtaaaagac acttgtccta cgagatttcc cagggtactc tcgaccgacc atgagttcag
     5581 tcagtgtgac ctggagtggg atcagactgc tggacccaaa gggagagcct agcatcagac
     5641 ccaggtgtga ggggatttgg tacaggaccc aaggagtatt ttaagtggga aaaagatgga
     5701 ctatttaata aagagtactt taagataact gcctatctat taaagtaaga gttctctacc
     5761 tcacagtttc cacaaaaatt agctctagag agaaaaaaca aaaatattac agaattactg
     5821 aggaaaatat aggatatttt tatacctttg gtgtgggaag gtcttttcta aacaacatga
     5881 aacctaaaag atataataag ggagaagata aacagatttt accaccaaaa atatattgaa
     5941 agtttgcata tgatggaaac caccaaggtt aaaacacaaa tgacagattt gggagaaaat
     6001 atttgcagca cttcaaaaat tggtgagtac agttacttta ggagaatagc ttgctttggg
     6061 ctccttggag caagtcactg gggcctgcta agcagcgacc taaagattca gcagtgacca
     6121 gctgagttct tccaggtcat ccaagggcgt tgctgccagc accaggccag ggcgcgtgga
     6181 atcctgtcta catcatagtg aaagcatgaa gtttatcagt gtgaagtgct tagcacagtg
     6241 cctggtacgt ataagagctc agtaaatatg aactataatc gtattagtaa aggattctga
     6301 gcggttacac tatagcaggc gttatttgca agtataatgt aatttgtaat caaatgataa
     6361 gggagaatct gtgaaccccc gaggaaatta gcagaataaa ggctgttctc tctgga
//
LOCUS       XM_032619786            6301 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mannosidase alpha class 2A member 2
            (MAN2A2), transcript variant X3, mRNA.
ACCESSION   XM_032619786
VERSION     XM_032619786.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6301
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6301
                     /gene="MAN2A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 21 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747493"
     CDS             410..3862
                     /gene="MAN2A2"
                     /codon_start=1
                     /product="alpha-mannosidase 2x isoform X1"
                     /protein_id="XP_032475677.1"
                     /db_xref="GeneID:116747493"
                     /translation="MKLKKQVTVCGAAIFCVAVFSLYLMLDRVQHDPTRHQNGGNFPR
                     SQISVLQNRIEQLEQLLEENHEIISHIKDSVLELTANVEGPPALLPYYMSNGSWVVPP
                     EPRPSFFSISPQDCQFALGVRGQKPELQMLTVSEELPFDNVDGGVWKQGFEISYSPHD
                     WDTEDLQVFVVPHSHNDPGWLKTFDKYYTEQTQHILNNMVSKLQEDPRRRFIWAEVSF
                     FAKWWDNINAQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALVDQLIEGHQWLEK
                     NLGATPRSGWAVDPFGYSPTMPYLLRRANLTSMLIQRVHYAIKKHFAATHSLEFMWRQ
                     TWDSDSSTDIFCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRINCPWKVPPRAIT
                     ETNVAERAGLLLDQYRKKSRLFRSNVLLVPLGDDFRYDKPQEWDAQFFNYQRLFDFLN
                     SKPDLHVQAQFGTLSDYFDALYKRTGVEPGAQPPGFPVLSGDFFSYADREDHYWTGYY
                     TSRPFYKSLDRVLEAHLRGAEILYSLAVAHARRSGVASQYPLSNFALLTEARRTLGLF
                     QHHDAITGTAKEAVVVDYGIRLLRSLVNLKQVIINAAHYLVLGDKKSYHFDPESPFLQ
                     MDDTRLNHDALPERTVIQLDSSPRYVVLFNPLEQERLSVVSLLVSSPRVRVLTEEGQP
                     LAVQVSAHWSSATDMVPDVYQVSVPVRLPALGLGVLQLQLGLDGPRTLPSSVRVYLHG
                     RQLSVSRHEAFPLRVIDSGTSDFALSNRYMQVWFSGLTGLLKSIRRVDEEQEQRVGME
                     FLIYGTRSSKDKSGAYLFLPDGEAKPYIPKDPPVLRITEGPFFSEVVAYYEHVHQVVR
                     LYNLPGVEGLSLDVSSLVDIRDCVNKELALRLHTDIDSQGTFFTDLNGFQVQPRRYRK
                     KLPLQANFYPMPVMACLQDAQSRLTLHAAQALGVSSLHDGQLEVILDRRLMQDDNRGL
                     GQGLKDNKRTCNHFRLLLERRTLGREVQDGPSTSYPSLLSHLTSMYLNTPVLALPVAK
                     RQPPGPALCSFRPLASSLPCDFHLLNLRTLQAEDDSLPSAETALLLHRKGFDCGLEAK
                     NLGFNCTTSQGKVALGSLFRGLDVVFLQPTSLTLLYPLASPSNSTDIYLEPMEIATFR
                     LRLG"
     misc_feature    815..3856
                     /gene="MAN2A2"
                     /note="alpha-mannosidase; Region: PLN02701"
                     /db_xref="CDD:178304"
ORIGIN      
        1 ccgctctgcc cggcggcctc cagcgtgggg aaccggcgcc ggcggcctgg cctctgtggg
       61 agcgactggt gggcggacgc ccgcctttgc ctgcgtcgct gcctccgcgc gggcagccct
      121 acccggggat gtgaggggcg cagctcggcc ggcggggccc ggagcggcgc ggaagccggc
      181 cgcagacgct ccacctactt tggcctggac tcagcctccc agggctaaaa atattgcccg
      241 gaggctcctg agcggaataa gatcgcgcta aatagagcac aaccctgcag aggcgacaga
      301 gctcctcagc ccgagggctg gaggaagact cctgagctgc cgctcccgcc gccgctcagc
      361 cggcagctag ctgtctccct ccgcccagca ggtgtgtgtg gaggccatta tgaagctgaa
      421 aaagcaggtg acagtgtgtg gggctgccat cttctgtgtg gctgtcttct cactctacct
      481 catgctggat cgagtgcagc atgatcccac ccgacaccag aacggtggga acttcccccg
      541 gagtcagatt tctgtgctcc agaaccgcat tgaacagctg gagcagctgt tggaggagaa
      601 tcatgagatc atcagccaca tcaaggactc tgtgctggag ctgacggcca acgtggaggg
      661 cccacctgcc ctgctgccgt actatatgtc caatggctcc tgggtggtgc caccagagcc
      721 ccgacccagc ttcttctcca tctcccctca agactgccaa tttgctttgg gggtccgggg
      781 ccagaaacca gagctgcaga tgctgactgt atcagaggag ttaccatttg acaacgtgga
      841 tggcggcgtg tggaagcaag gctttgagat ctcttatagc ccgcacgact gggacactga
      901 agacctgcag gtgtttgtgg tccctcactc tcacaatgac ccaggctggc tcaagacctt
      961 tgacaagtac tacacagagc agacacagca cattctcaac aacatggtgt ccaagctgca
     1021 agaggacccc cggcggcgct tcatctgggc ggaagtctcc ttcttcgcca agtggtggga
     1081 caacatcaat gcccaaaaga gagcagcagt ccgaaggctg gtgggaaacg ggcagctgga
     1141 gattgcaaca ggaggctggg taatgccgga tgaggccaac tcccactact ttgcattggt
     1201 tgaccagctc attgagggac accagtggct ggagaaaaac ctcggtgcaa ccccgcgctc
     1261 aggctgggca gtggacccct ttggatacag ccccaccatg ccttacctgc tgcgccgtgc
     1321 caacctgacc agcatgctga ttcagagggt acattatgct atcaagaagc actttgctgc
     1381 cacccacagc ctggagttca tgtggaggca gacctgggat tcggactcca gcacagacat
     1441 cttctgccac atgatgcctt tctacagcta tgacgtcccc catacatgtg gcccggatcc
     1501 caagatctgc tgccagtttg atttcaagcg cttgcctggg gggcgcatca actgcccttg
     1561 gaaggtgcca ccccgggcta tcacagagac aaatgtggcc gagagggcag gcctgctcct
     1621 ggaccagtac aggaagaagt cccggctctt ccgaagcaac gtcctcctgg tgccgctggg
     1681 cgatgacttc cgatatgaca agccccagga gtgggatgcc cagttcttca actaccagcg
     1741 gctcttcgac ttccttaaca gcaagcctga tctccacgtg caggcccagt ttggcaccct
     1801 ctccgactat tttgatgctc tatataagag gacaggggtg gagccagggg cccagcctcc
     1861 agggtttcct gtgctgagtg gggatttctt ctcctacgcg gaccgggagg accattactg
     1921 gacaggctat tacacttcac ggcctttcta caagagcttg gaccgtgtcc tggaagcgca
     1981 cctgcggggg gcagagattc tgtacagcct ggctgtggct catgcccggc gctctggagt
     2041 ggccagccag tacccgctct caaactttgc ccttctgacg gaagctcggc gcacactggg
     2101 actcttccag caccacgacg ctatcactgg cactgccaag gaggcagttg ttgtggacta
     2161 tgggatcagg cttctgcgct cccttgtcaa cctgaagcag gtcatcatta acgcagctca
     2221 ctatctggtg ctgggggaca agaaaagcta ccactttgac cctgagtcac ccttcctgca
     2281 aatggatgac acccgcttaa atcacgatgc cctaccagag cgcacagtga tccagctgga
     2341 ttcctcaccc aggtacgtgg tgctgttcaa cccactggaa caggaacggc tcagcgtggt
     2401 gtcccttctg gtcagctcac cccgggtgcg ggtccttaca gaggagggtc agcccctggc
     2461 tgtgcaggtc agcgcgcatt ggagctctgc cactgacatg gtccctgacg tctaccaggt
     2521 gtctgtgccc gtccgcctgc cggcgctggg cctgggcgtg ctgcagctgc agctgggtct
     2581 ggacgggccc cgcaccctgc cctcctccgt gcgtgtctac ctgcatgggc ggcagctgtc
     2641 cgtcagcagg cacgaggcgt tccctctacg cgtcattgac tctggcacca gcgacttcgc
     2701 cctcagcaac cgctatatgc aggtctggtt ctcaggcctc actgggctcc tcaagagcat
     2761 ccgaagggtg gacgaggagc aggagcagcg ggtgggcatg gagttcctca tctatggcac
     2821 ccgctcgtcc aaagacaaga gtggagccta cctcttcctg cctgatggcg aggccaagcc
     2881 ctacatcccc aaggaccctc ccgtgctgcg catcacggaa ggccctttct tctcagaggt
     2941 ggtggcctac tatgagcacg ttcaccaggt agtccggctt tataacctgc caggggtgga
     3001 ggggctgtct ctggacgtgt catccctggt ggacatccgg gactgcgtca acaaggagct
     3061 ggccctgcgc ctccacacag acattgacag ccagggcacc ttcttcacgg acctcaatgg
     3121 ctttcaggtg cagccccggc ggtatcggaa gaagctgccc ctgcaggcca acttctaccc
     3181 catgccggtc atggcctgcc tccaggacgc acagagccgc ctcacactgc acgctgccca
     3241 ggccctgggc gtctccagcc tccacgatgg ccagctggag gtgatcttgg accggcgact
     3301 aatgcaggac gacaaccgag gcctgggcca agggctcaag gacaacaaga gaacctgcaa
     3361 ccatttccgt ctcctgttgg aacggcgaac cctgggcagg gaggtccaag atggcccctc
     3421 taccagctac ccgtccctcc tcagtcacct gacttccatg tacctgaaca cccctgtgct
     3481 cgccctgccc gtggccaaga ggcagccccc aggccctgct ctgtgctcat ttcgtcctct
     3541 ggcttcctct ctgccctgtg acttccacct gctcaacctg cggacgctcc aggcagagga
     3601 tgatagcttg ccctcagccg aaactgcgct cctcttacac cgcaagggtt ttgactgtgg
     3661 cctcgaggcc aagaacttgg gcttcaactg caccacaagc caaggcaagg tggccctggg
     3721 aagcctcttc cgtggcttgg atgtggtttt cctgcagcca acctccttga cattgctgta
     3781 ccccttggcc tcgccctcca acagcactga catctatttg gagcccatgg agatcgccac
     3841 ctttcgcctc cgcctgggct agggcttctt gtggcctgaa gagaaagttc atccacagag
     3901 acggcctttt cacataagat cgggttggac atgccaccct gggtctcctg tcctgatcta
     3961 cctctcagaa ctgtgacaga ctgggctctg ccctcatttt ctctttatcg ttgcttctgt
     4021 gttcgggggc aacccacagc ccagtgttgg gtggttaggg caggcgccag tgagttgtag
     4081 gagagaaggc ccttggtcag agtgggtggt gccagcctct gctttgggtt gtgcgtgccc
     4141 acctagttgg gtgcaggctc aagcacccat cctttccctt gaatgggatg gaggagaagc
     4201 aggggagcct gagtgggtaa tagcccagcg tcagggtcac agtagtcaag agctggctct
     4261 cggggagtcc tgtggttgtg taagggctac atgtcctggt gtgacaggca ggagcagagc
     4321 actgccagga ggagggggct ggggaccgcg agttagcagt ggggtggagg agtagcagga
     4381 atcgctgctt tctgtgacgg ctccactctt agtgctccct gaccctcacg ccctggccag
     4441 gcgctgcagt gtggcaggaa ggactcatga agcctgtcat gaccggagct catgggacac
     4501 ttcaggtacc aaaaccccat ctcagactgg gcacttggtc tgtgtgttga tttgtggaat
     4561 ggtggcagag gccaccctac ttgactcctc tttggttcct gcactctgta caccactgtc
     4621 ccgaagagct gcttcccatc atgggggcgt ttgatcgggc ttgtttcctt tccctggaaa
     4681 gaaagtgaag cctccagctt gcggtgggca actcgagaaa gctttcgtca tcattcctac
     4741 agtcagccct gaagcttcgc cttgttcatc cttccacaga agtattcact tcctggtgcg
     4801 gggactaggg agatgtacac taaattagga ggcaccgtgg ctgctcatta gccttcactg
     4861 cagcttcgat tattagaaaa aaatttatga tagtctctag agatgctgaa acgatatttg
     4921 gtaaaattta aaatctatcc cttattaaac tcttagtaag ttaagattac aaagaaacat
     4981 cctaacctag ataaaggtgt ctctatctga aaccaacagt cagtggcatt ctaaagtgtc
     5041 agataccacc ggcattccca gtaaagtcag aaatgagtca aggacatact attatttagc
     5101 tgtgttctgg cactactaaa cccctgcagt gtggcagatg agagagatga gggagggtta
     5161 cagaacgccc aacctgtaca atccagcagg atcagctgaa gaccttaaca gagcaaacaa
     5221 ggcacatcac gtttctataa agattctggt tctctccaga tcagctcata aattcaatgt
     5281 attccagtga gattggatac tttttggaat ttaatgggtt ctaacgttca tttggaagac
     5341 taagtgtgtg agaataccaa gaaaattctg aatgacagtg agtccggggc ggtggtgctc
     5401 aggtgggtaa aagacacttg tcctacgaga tttcccaggg tactctcgac cgaccatgag
     5461 ttcagtcagt gtgacctgga gtgggatcag actgctggac ccaaagggag agcctagcat
     5521 cagacccagg tgtgagggga tttggtacag gacccaagga gtattttaag tgggaaaaag
     5581 atggactatt taataaagag tactttaaga taactgccta tctattaaag taagagttct
     5641 ctacctcaca gtttccacaa aaattagctc tagagagaaa aaacaaaaat attacagaat
     5701 tactgaggaa aatataggat atttttatac ctttggtgtg ggaaggtctt ttctaaacaa
     5761 catgaaacct aaaagatata ataagggaga agataaacag attttaccac caaaaatata
     5821 ttgaaagttt gcatatgatg gaaaccacca aggttaaaac acaaatgaca gatttgggag
     5881 aaaatatttg cagcacttca aaaattggtg agtacagtta ctttaggaga atagcttgct
     5941 ttgggctcct tggagcaagt cactggggcc tgctaagcag cgacctaaag attcagcagt
     6001 gaccagctga gttcttccag gtcatccaag ggcgttgctg ccagcaccag gccagggcgc
     6061 gtggaatcct gtctacatca tagtgaaagc atgaagttta tcagtgtgaa gtgcttagca
     6121 cagtgcctgg tacgtataag agctcagtaa atatgaacta taatcgtatt agtaaaggat
     6181 tctgagcggt tacactatag caggcgttat ttgcaagtat aatgtaattt gtaatcaaat
     6241 gataagggag aatctgtgaa cccccgagga aattagcaga ataaaggctg ttctctctgg
     6301 a
//
LOCUS       XM_032619795            6162 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mannosidase alpha class 2A member 2
            (MAN2A2), transcript variant X4, mRNA.
ACCESSION   XM_032619795
VERSION     XM_032619795.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6162
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6162
                     /gene="MAN2A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 21 long SRA reads, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747493"
     CDS             271..3723
                     /gene="MAN2A2"
                     /codon_start=1
                     /product="alpha-mannosidase 2x isoform X1"
                     /protein_id="XP_032475686.1"
                     /db_xref="GeneID:116747493"
                     /translation="MKLKKQVTVCGAAIFCVAVFSLYLMLDRVQHDPTRHQNGGNFPR
                     SQISVLQNRIEQLEQLLEENHEIISHIKDSVLELTANVEGPPALLPYYMSNGSWVVPP
                     EPRPSFFSISPQDCQFALGVRGQKPELQMLTVSEELPFDNVDGGVWKQGFEISYSPHD
                     WDTEDLQVFVVPHSHNDPGWLKTFDKYYTEQTQHILNNMVSKLQEDPRRRFIWAEVSF
                     FAKWWDNINAQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALVDQLIEGHQWLEK
                     NLGATPRSGWAVDPFGYSPTMPYLLRRANLTSMLIQRVHYAIKKHFAATHSLEFMWRQ
                     TWDSDSSTDIFCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRINCPWKVPPRAIT
                     ETNVAERAGLLLDQYRKKSRLFRSNVLLVPLGDDFRYDKPQEWDAQFFNYQRLFDFLN
                     SKPDLHVQAQFGTLSDYFDALYKRTGVEPGAQPPGFPVLSGDFFSYADREDHYWTGYY
                     TSRPFYKSLDRVLEAHLRGAEILYSLAVAHARRSGVASQYPLSNFALLTEARRTLGLF
                     QHHDAITGTAKEAVVVDYGIRLLRSLVNLKQVIINAAHYLVLGDKKSYHFDPESPFLQ
                     MDDTRLNHDALPERTVIQLDSSPRYVVLFNPLEQERLSVVSLLVSSPRVRVLTEEGQP
                     LAVQVSAHWSSATDMVPDVYQVSVPVRLPALGLGVLQLQLGLDGPRTLPSSVRVYLHG
                     RQLSVSRHEAFPLRVIDSGTSDFALSNRYMQVWFSGLTGLLKSIRRVDEEQEQRVGME
                     FLIYGTRSSKDKSGAYLFLPDGEAKPYIPKDPPVLRITEGPFFSEVVAYYEHVHQVVR
                     LYNLPGVEGLSLDVSSLVDIRDCVNKELALRLHTDIDSQGTFFTDLNGFQVQPRRYRK
                     KLPLQANFYPMPVMACLQDAQSRLTLHAAQALGVSSLHDGQLEVILDRRLMQDDNRGL
                     GQGLKDNKRTCNHFRLLLERRTLGREVQDGPSTSYPSLLSHLTSMYLNTPVLALPVAK
                     RQPPGPALCSFRPLASSLPCDFHLLNLRTLQAEDDSLPSAETALLLHRKGFDCGLEAK
                     NLGFNCTTSQGKVALGSLFRGLDVVFLQPTSLTLLYPLASPSNSTDIYLEPMEIATFR
                     LRLG"
     misc_feature    676..3717
                     /gene="MAN2A2"
                     /note="alpha-mannosidase; Region: PLN02701"
                     /db_xref="CDD:178304"
ORIGIN      
        1 tctctgaagt tgccccacag ccgaacagtt gtgcctagct tttccctact caggttatct
       61 ttgacatcaa tcactggtgg cttccagggg cccccctaaa tgctctgtaa gcagaggctg
      121 aaagttaccc actgcaggag tcagagctaa cagggagagg actctttatg ttagaaacat
      181 aagctgtggc ttcttttttt attcattctg catttctgaa taagagacca gctgtgccag
      241 tcactgtttc tggtgtgtgt ggaggccatt atgaagctga aaaagcaggt gacagtgtgt
      301 ggggctgcca tcttctgtgt ggctgtcttc tcactctacc tcatgctgga tcgagtgcag
      361 catgatccca cccgacacca gaacggtggg aacttccccc ggagtcagat ttctgtgctc
      421 cagaaccgca ttgaacagct ggagcagctg ttggaggaga atcatgagat catcagccac
      481 atcaaggact ctgtgctgga gctgacggcc aacgtggagg gcccacctgc cctgctgccg
      541 tactatatgt ccaatggctc ctgggtggtg ccaccagagc cccgacccag cttcttctcc
      601 atctcccctc aagactgcca atttgctttg ggggtccggg gccagaaacc agagctgcag
      661 atgctgactg tatcagagga gttaccattt gacaacgtgg atggcggcgt gtggaagcaa
      721 ggctttgaga tctcttatag cccgcacgac tgggacactg aagacctgca ggtgtttgtg
      781 gtccctcact ctcacaatga cccaggctgg ctcaagacct ttgacaagta ctacacagag
      841 cagacacagc acattctcaa caacatggtg tccaagctgc aagaggaccc ccggcggcgc
      901 ttcatctggg cggaagtctc cttcttcgcc aagtggtggg acaacatcaa tgcccaaaag
      961 agagcagcag tccgaaggct ggtgggaaac gggcagctgg agattgcaac aggaggctgg
     1021 gtaatgccgg atgaggccaa ctcccactac tttgcattgg ttgaccagct cattgaggga
     1081 caccagtggc tggagaaaaa cctcggtgca accccgcgct caggctgggc agtggacccc
     1141 tttggataca gccccaccat gccttacctg ctgcgccgtg ccaacctgac cagcatgctg
     1201 attcagaggg tacattatgc tatcaagaag cactttgctg ccacccacag cctggagttc
     1261 atgtggaggc agacctggga ttcggactcc agcacagaca tcttctgcca catgatgcct
     1321 ttctacagct atgacgtccc ccatacatgt ggcccggatc ccaagatctg ctgccagttt
     1381 gatttcaagc gcttgcctgg ggggcgcatc aactgccctt ggaaggtgcc accccgggct
     1441 atcacagaga caaatgtggc cgagagggca ggcctgctcc tggaccagta caggaagaag
     1501 tcccggctct tccgaagcaa cgtcctcctg gtgccgctgg gcgatgactt ccgatatgac
     1561 aagccccagg agtgggatgc ccagttcttc aactaccagc ggctcttcga cttccttaac
     1621 agcaagcctg atctccacgt gcaggcccag tttggcaccc tctccgacta ttttgatgct
     1681 ctatataaga ggacaggggt ggagccaggg gcccagcctc cagggtttcc tgtgctgagt
     1741 ggggatttct tctcctacgc ggaccgggag gaccattact ggacaggcta ttacacttca
     1801 cggcctttct acaagagctt ggaccgtgtc ctggaagcgc acctgcgggg ggcagagatt
     1861 ctgtacagcc tggctgtggc tcatgcccgg cgctctggag tggccagcca gtacccgctc
     1921 tcaaactttg cccttctgac ggaagctcgg cgcacactgg gactcttcca gcaccacgac
     1981 gctatcactg gcactgccaa ggaggcagtt gttgtggact atgggatcag gcttctgcgc
     2041 tcccttgtca acctgaagca ggtcatcatt aacgcagctc actatctggt gctgggggac
     2101 aagaaaagct accactttga ccctgagtca cccttcctgc aaatggatga cacccgctta
     2161 aatcacgatg ccctaccaga gcgcacagtg atccagctgg attcctcacc caggtacgtg
     2221 gtgctgttca acccactgga acaggaacgg ctcagcgtgg tgtcccttct ggtcagctca
     2281 ccccgggtgc gggtccttac agaggagggt cagcccctgg ctgtgcaggt cagcgcgcat
     2341 tggagctctg ccactgacat ggtccctgac gtctaccagg tgtctgtgcc cgtccgcctg
     2401 ccggcgctgg gcctgggcgt gctgcagctg cagctgggtc tggacgggcc ccgcaccctg
     2461 ccctcctccg tgcgtgtcta cctgcatggg cggcagctgt ccgtcagcag gcacgaggcg
     2521 ttccctctac gcgtcattga ctctggcacc agcgacttcg ccctcagcaa ccgctatatg
     2581 caggtctggt tctcaggcct cactgggctc ctcaagagca tccgaagggt ggacgaggag
     2641 caggagcagc gggtgggcat ggagttcctc atctatggca cccgctcgtc caaagacaag
     2701 agtggagcct acctcttcct gcctgatggc gaggccaagc cctacatccc caaggaccct
     2761 cccgtgctgc gcatcacgga aggccctttc ttctcagagg tggtggccta ctatgagcac
     2821 gttcaccagg tagtccggct ttataacctg ccaggggtgg aggggctgtc tctggacgtg
     2881 tcatccctgg tggacatccg ggactgcgtc aacaaggagc tggccctgcg cctccacaca
     2941 gacattgaca gccagggcac cttcttcacg gacctcaatg gctttcaggt gcagccccgg
     3001 cggtatcgga agaagctgcc cctgcaggcc aacttctacc ccatgccggt catggcctgc
     3061 ctccaggacg cacagagccg cctcacactg cacgctgccc aggccctggg cgtctccagc
     3121 ctccacgatg gccagctgga ggtgatcttg gaccggcgac taatgcagga cgacaaccga
     3181 ggcctgggcc aagggctcaa ggacaacaag agaacctgca accatttccg tctcctgttg
     3241 gaacggcgaa ccctgggcag ggaggtccaa gatggcccct ctaccagcta cccgtccctc
     3301 ctcagtcacc tgacttccat gtacctgaac acccctgtgc tcgccctgcc cgtggccaag
     3361 aggcagcccc caggccctgc tctgtgctca tttcgtcctc tggcttcctc tctgccctgt
     3421 gacttccacc tgctcaacct gcggacgctc caggcagagg atgatagctt gccctcagcc
     3481 gaaactgcgc tcctcttaca ccgcaagggt tttgactgtg gcctcgaggc caagaacttg
     3541 ggcttcaact gcaccacaag ccaaggcaag gtggccctgg gaagcctctt ccgtggcttg
     3601 gatgtggttt tcctgcagcc aacctccttg acattgctgt accccttggc ctcgccctcc
     3661 aacagcactg acatctattt ggagcccatg gagatcgcca cctttcgcct ccgcctgggc
     3721 tagggcttct tgtggcctga agagaaagtt catccacaga gacggccttt tcacataaga
     3781 tcgggttgga catgccaccc tgggtctcct gtcctgatct acctctcaga actgtgacag
     3841 actgggctct gccctcattt tctctttatc gttgcttctg tgttcggggg caacccacag
     3901 cccagtgttg ggtggttagg gcaggcgcca gtgagttgta ggagagaagg cccttggtca
     3961 gagtgggtgg tgccagcctc tgctttgggt tgtgcgtgcc cacctagttg ggtgcaggct
     4021 caagcaccca tcctttccct tgaatgggat ggaggagaag caggggagcc tgagtgggta
     4081 atagcccagc gtcagggtca cagtagtcaa gagctggctc tcggggagtc ctgtggttgt
     4141 gtaagggcta catgtcctgg tgtgacaggc aggagcagag cactgccagg aggagggggc
     4201 tggggaccgc gagttagcag tggggtggag gagtagcagg aatcgctgct ttctgtgacg
     4261 gctccactct tagtgctccc tgaccctcac gccctggcca ggcgctgcag tgtggcagga
     4321 aggactcatg aagcctgtca tgaccggagc tcatgggaca cttcaggtac caaaacccca
     4381 tctcagactg ggcacttggt ctgtgtgttg atttgtggaa tggtggcaga ggccacccta
     4441 cttgactcct ctttggttcc tgcactctgt acaccactgt cccgaagagc tgcttcccat
     4501 catgggggcg tttgatcggg cttgtttcct ttccctggaa agaaagtgaa gcctccagct
     4561 tgcggtgggc aactcgagaa agctttcgtc atcattccta cagtcagccc tgaagcttcg
     4621 ccttgttcat ccttccacag aagtattcac ttcctggtgc ggggactagg gagatgtaca
     4681 ctaaattagg aggcaccgtg gctgctcatt agccttcact gcagcttcga ttattagaaa
     4741 aaaatttatg atagtctcta gagatgctga aacgatattt ggtaaaattt aaaatctatc
     4801 ccttattaaa ctcttagtaa gttaagatta caaagaaaca tcctaaccta gataaaggtg
     4861 tctctatctg aaaccaacag tcagtggcat tctaaagtgt cagataccac cggcattccc
     4921 agtaaagtca gaaatgagtc aaggacatac tattatttag ctgtgttctg gcactactaa
     4981 acccctgcag tgtggcagat gagagagatg agggagggtt acagaacgcc caacctgtac
     5041 aatccagcag gatcagctga agaccttaac agagcaaaca aggcacatca cgtttctata
     5101 aagattctgg ttctctccag atcagctcat aaattcaatg tattccagtg agattggata
     5161 ctttttggaa tttaatgggt tctaacgttc atttggaaga ctaagtgtgt gagaatacca
     5221 agaaaattct gaatgacagt gagtccgggg cggtggtgct caggtgggta aaagacactt
     5281 gtcctacgag atttcccagg gtactctcga ccgaccatga gttcagtcag tgtgacctgg
     5341 agtgggatca gactgctgga cccaaaggga gagcctagca tcagacccag gtgtgagggg
     5401 atttggtaca ggacccaagg agtattttaa gtgggaaaaa gatggactat ttaataaaga
     5461 gtactttaag ataactgcct atctattaaa gtaagagttc tctacctcac agtttccaca
     5521 aaaattagct ctagagagaa aaaacaaaaa tattacagaa ttactgagga aaatatagga
     5581 tatttttata cctttggtgt gggaaggtct tttctaaaca acatgaaacc taaaagatat
     5641 aataagggag aagataaaca gattttacca ccaaaaatat attgaaagtt tgcatatgat
     5701 ggaaaccacc aaggttaaaa cacaaatgac agatttggga gaaaatattt gcagcacttc
     5761 aaaaattggt gagtacagtt actttaggag aatagcttgc tttgggctcc ttggagcaag
     5821 tcactggggc ctgctaagca gcgacctaaa gattcagcag tgaccagctg agttcttcca
     5881 ggtcatccaa gggcgttgct gccagcacca ggccagggcg cgtggaatcc tgtctacatc
     5941 atagtgaaag catgaagttt atcagtgtga agtgcttagc acagtgcctg gtacgtataa
     6001 gagctcagta aatatgaact ataatcgtat tagtaaagga ttctgagcgg ttacactata
     6061 gcaggcgtta tttgcaagta taatgtaatt tgtaatcaaa tgataaggga gaatctgtga
     6121 acccccgagg aaattagcag aataaaggct gttctctctg ga
//
LOCUS       XM_032619805            6200 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mannosidase alpha class 2A member 2
            (MAN2A2), transcript variant X5, mRNA.
ACCESSION   XM_032619805
VERSION     XM_032619805.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6200
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6200
                     /gene="MAN2A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747493"
     CDS             357..3761
                     /gene="MAN2A2"
                     /codon_start=1
                     /product="alpha-mannosidase 2x isoform X2"
                     /protein_id="XP_032475696.1"
                     /db_xref="GeneID:116747493"
                     /translation="MKLKKQVTVCGAAIFCVAVFSLYLMLDRVQHDPTRHQNGGNFPR
                     SQISVLQNRIEQLEQLLEENHEIISHIKDSVLELTANVEGPPALLPYYMSNGSWVVPP
                     EPRPSFFSISPQDCQFALGVRGQKPELQMLTVSEELPFDNVDGGVWKQGFEISYSPHD
                     WDTEDLQVFVVPHSHNDPGWLKTFDKYYTEQTQHILNNMVSKLQEDPRRRFIWAEVSF
                     FAKWWDNINAQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALVDQLIEGHQWLEK
                     NLGATPRSGWAVDPFGYSPTMPYLLRRANLTSMLIQRVHYAIKKHFAATHSLEFMWRQ
                     TWDSDSSTDIFCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRINCPWKVPPRAIT
                     ETNVAERAGLLLDQYRKKSRLFRSNVLLVPLGDDFRYDKPQEWDAQFFNYQRLFDFLN
                     SKPDLHVQAQFGTLSDYFDALYKRTGVEPGAQPPGFPVLSGDFFSYADREDHYWTGYY
                     TSRPFYKSLDRVLEAHLRGAEILYSLAVAHARRSGVASQYPLSNFALLTEARRTLGLF
                     QHHDAITGTAKEAVVVDYGIRLLRSLVNLKQVIINAAHYLVLGDKKSYHFDPESPFLQ
                     MDDTRLNHDALPERTVIQLDSSPRYVVLFNPLEQERLSVVSLLVSSPRVRVLTEEGQP
                     LAVQVSAHWSSATDMVPDVYQVSVPVRLPALGLGVLQLQLGLDGPRTLPSSVRVYLHG
                     RQLSVSRHEAFPLRVIDSGTSDFALSNRYMQVWFSGLTGLLKSIRRVDEEQEQRVGME
                     FLIYGTRSSKDKSGAYLFLPDGEAKPYIPKDPPVLRITEGPFFSEVVAYYEHVHQVVR
                     LYNLPGVEGLSLDVSSLVDIRDCVNKELALRLHTDIDSQGTFFTDLNGFQVQPRRYRK
                     KLPLQANFYPMPVMACLQDAQSRLTLHAAQALGVSSLHDGQLEVILDRRLMQDDNRGL
                     GQGLKDNKRTCNHFRLLLERRTLGREVQDGPSTSYPSLLSHLTSMYLNTPVLALPVAK
                     RQPPGPALCSFRPLASSLPCDFHLLNLRTLQAEGFDCGLEAKNLGFNCTTSQGKVALG
                     SLFRGLDVVFLQPTSLTLLYPLASPSNSTDIYLEPMEIATFRLRLG"
     misc_feature    762..3755
                     /gene="MAN2A2"
                     /note="alpha-mannosidase; Region: PLN02701"
                     /db_xref="CDD:178304"
ORIGIN      
        1 ggtttggtag ctgttgggtg tgtgacttgg ggaagaggaa gagagatcag gaagatatac
       61 aggcttcttg accagatggt ggtgttattt ctgaattagg atcccaggca gaggagcaga
      121 gctgcaggaa gcatgctcca cctactttgg cctggactca gcctcccagg gctaaaaata
      181 ttgcccggag gctcctgagc ggaataagat cgcgctaaat agagcacaac cctgcagagg
      241 cgacagagct cctcagcccg agggctggag gaagactcct gagctgccgc tcccgccgcc
      301 gctcagccgg cagctagctg tctccctccg cccagcaggt gtgtgtggag gccattatga
      361 agctgaaaaa gcaggtgaca gtgtgtgggg ctgccatctt ctgtgtggct gtcttctcac
      421 tctacctcat gctggatcga gtgcagcatg atcccacccg acaccagaac ggtgggaact
      481 tcccccggag tcagatttct gtgctccaga accgcattga acagctggag cagctgttgg
      541 aggagaatca tgagatcatc agccacatca aggactctgt gctggagctg acggccaacg
      601 tggagggccc acctgccctg ctgccgtact atatgtccaa tggctcctgg gtggtgccac
      661 cagagccccg acccagcttc ttctccatct cccctcaaga ctgccaattt gctttggggg
      721 tccggggcca gaaaccagag ctgcagatgc tgactgtatc agaggagtta ccatttgaca
      781 acgtggatgg cggcgtgtgg aagcaaggct ttgagatctc ttatagcccg cacgactggg
      841 acactgaaga cctgcaggtg tttgtggtcc ctcactctca caatgaccca ggctggctca
      901 agacctttga caagtactac acagagcaga cacagcacat tctcaacaac atggtgtcca
      961 agctgcaaga ggacccccgg cggcgcttca tctgggcgga agtctccttc ttcgccaagt
     1021 ggtgggacaa catcaatgcc caaaagagag cagcagtccg aaggctggtg ggaaacgggc
     1081 agctggagat tgcaacagga ggctgggtaa tgccggatga ggccaactcc cactactttg
     1141 cattggttga ccagctcatt gagggacacc agtggctgga gaaaaacctc ggtgcaaccc
     1201 cgcgctcagg ctgggcagtg gacccctttg gatacagccc caccatgcct tacctgctgc
     1261 gccgtgccaa cctgaccagc atgctgattc agagggtaca ttatgctatc aagaagcact
     1321 ttgctgccac ccacagcctg gagttcatgt ggaggcagac ctgggattcg gactccagca
     1381 cagacatctt ctgccacatg atgcctttct acagctatga cgtcccccat acatgtggcc
     1441 cggatcccaa gatctgctgc cagtttgatt tcaagcgctt gcctgggggg cgcatcaact
     1501 gcccttggaa ggtgccaccc cgggctatca cagagacaaa tgtggccgag agggcaggcc
     1561 tgctcctgga ccagtacagg aagaagtccc ggctcttccg aagcaacgtc ctcctggtgc
     1621 cgctgggcga tgacttccga tatgacaagc cccaggagtg ggatgcccag ttcttcaact
     1681 accagcggct cttcgacttc cttaacagca agcctgatct ccacgtgcag gcccagtttg
     1741 gcaccctctc cgactatttt gatgctctat ataagaggac aggggtggag ccaggggccc
     1801 agcctccagg gtttcctgtg ctgagtgggg atttcttctc ctacgcggac cgggaggacc
     1861 attactggac aggctattac acttcacggc ctttctacaa gagcttggac cgtgtcctgg
     1921 aagcgcacct gcggggggca gagattctgt acagcctggc tgtggctcat gcccggcgct
     1981 ctggagtggc cagccagtac ccgctctcaa actttgccct tctgacggaa gctcggcgca
     2041 cactgggact cttccagcac cacgacgcta tcactggcac tgccaaggag gcagttgttg
     2101 tggactatgg gatcaggctt ctgcgctccc ttgtcaacct gaagcaggtc atcattaacg
     2161 cagctcacta tctggtgctg ggggacaaga aaagctacca ctttgaccct gagtcaccct
     2221 tcctgcaaat ggatgacacc cgcttaaatc acgatgccct accagagcgc acagtgatcc
     2281 agctggattc ctcacccagg tacgtggtgc tgttcaaccc actggaacag gaacggctca
     2341 gcgtggtgtc ccttctggtc agctcacccc gggtgcgggt ccttacagag gagggtcagc
     2401 ccctggctgt gcaggtcagc gcgcattgga gctctgccac tgacatggtc cctgacgtct
     2461 accaggtgtc tgtgcccgtc cgcctgccgg cgctgggcct gggcgtgctg cagctgcagc
     2521 tgggtctgga cgggccccgc accctgccct cctccgtgcg tgtctacctg catgggcggc
     2581 agctgtccgt cagcaggcac gaggcgttcc ctctacgcgt cattgactct ggcaccagcg
     2641 acttcgccct cagcaaccgc tatatgcagg tctggttctc aggcctcact gggctcctca
     2701 agagcatccg aagggtggac gaggagcagg agcagcgggt gggcatggag ttcctcatct
     2761 atggcacccg ctcgtccaaa gacaagagtg gagcctacct cttcctgcct gatggcgagg
     2821 ccaagcccta catccccaag gaccctcccg tgctgcgcat cacggaaggc cctttcttct
     2881 cagaggtggt ggcctactat gagcacgttc accaggtagt ccggctttat aacctgccag
     2941 gggtggaggg gctgtctctg gacgtgtcat ccctggtgga catccgggac tgcgtcaaca
     3001 aggagctggc cctgcgcctc cacacagaca ttgacagcca gggcaccttc ttcacggacc
     3061 tcaatggctt tcaggtgcag ccccggcggt atcggaagaa gctgcccctg caggccaact
     3121 tctaccccat gccggtcatg gcctgcctcc aggacgcaca gagccgcctc acactgcacg
     3181 ctgcccaggc cctgggcgtc tccagcctcc acgatggcca gctggaggtg atcttggacc
     3241 ggcgactaat gcaggacgac aaccgaggcc tgggccaagg gctcaaggac aacaagagaa
     3301 cctgcaacca tttccgtctc ctgttggaac ggcgaaccct gggcagggag gtccaagatg
     3361 gcccctctac cagctacccg tccctcctca gtcacctgac ttccatgtac ctgaacaccc
     3421 ctgtgctcgc cctgcccgtg gccaagaggc agcccccagg ccctgctctg tgctcatttc
     3481 gtcctctggc ttcctctctg ccctgtgact tccacctgct caacctgcgg acgctccagg
     3541 cagagggttt tgactgtggc ctcgaggcca agaacttggg cttcaactgc accacaagcc
     3601 aaggcaaggt ggccctggga agcctcttcc gtggcttgga tgtggttttc ctgcagccaa
     3661 cctccttgac attgctgtac cccttggcct cgccctccaa cagcactgac atctatttgg
     3721 agcccatgga gatcgccacc tttcgcctcc gcctgggcta gggcttcttg tggcctgaag
     3781 agaaagttca tccacagaga cggccttttc acataagatc gggttggaca tgccaccctg
     3841 ggtctcctgt cctgatctac ctctcagaac tgtgacagac tgggctctgc cctcattttc
     3901 tctttatcgt tgcttctgtg ttcgggggca acccacagcc cagtgttggg tggttagggc
     3961 aggcgccagt gagttgtagg agagaaggcc cttggtcaga gtgggtggtg ccagcctctg
     4021 ctttgggttg tgcgtgccca cctagttggg tgcaggctca agcacccatc ctttcccttg
     4081 aatgggatgg aggagaagca ggggagcctg agtgggtaat agcccagcgt cagggtcaca
     4141 gtagtcaaga gctggctctc ggggagtcct gtggttgtgt aagggctaca tgtcctggtg
     4201 tgacaggcag gagcagagca ctgccaggag gagggggctg gggaccgcga gttagcagtg
     4261 gggtggagga gtagcaggaa tcgctgcttt ctgtgacggc tccactctta gtgctccctg
     4321 accctcacgc cctggccagg cgctgcagtg tggcaggaag gactcatgaa gcctgtcatg
     4381 accggagctc atgggacact tcaggtacca aaaccccatc tcagactggg cacttggtct
     4441 gtgtgttgat ttgtggaatg gtggcagagg ccaccctact tgactcctct ttggttcctg
     4501 cactctgtac accactgtcc cgaagagctg cttcccatca tgggggcgtt tgatcgggct
     4561 tgtttccttt ccctggaaag aaagtgaagc ctccagcttg cggtgggcaa ctcgagaaag
     4621 ctttcgtcat cattcctaca gtcagccctg aagcttcgcc ttgttcatcc ttccacagaa
     4681 gtattcactt cctggtgcgg ggactaggga gatgtacact aaattaggag gcaccgtggc
     4741 tgctcattag ccttcactgc agcttcgatt attagaaaaa aatttatgat agtctctaga
     4801 gatgctgaaa cgatatttgg taaaatttaa aatctatccc ttattaaact cttagtaagt
     4861 taagattaca aagaaacatc ctaacctaga taaaggtgtc tctatctgaa accaacagtc
     4921 agtggcattc taaagtgtca gataccaccg gcattcccag taaagtcaga aatgagtcaa
     4981 ggacatacta ttatttagct gtgttctggc actactaaac ccctgcagtg tggcagatga
     5041 gagagatgag ggagggttac agaacgccca acctgtacaa tccagcagga tcagctgaag
     5101 accttaacag agcaaacaag gcacatcacg tttctataaa gattctggtt ctctccagat
     5161 cagctcataa attcaatgta ttccagtgag attggatact ttttggaatt taatgggttc
     5221 taacgttcat ttggaagact aagtgtgtga gaataccaag aaaattctga atgacagtga
     5281 gtccggggcg gtggtgctca ggtgggtaaa agacacttgt cctacgagat ttcccagggt
     5341 actctcgacc gaccatgagt tcagtcagtg tgacctggag tgggatcaga ctgctggacc
     5401 caaagggaga gcctagcatc agacccaggt gtgaggggat ttggtacagg acccaaggag
     5461 tattttaagt gggaaaaaga tggactattt aataaagagt actttaagat aactgcctat
     5521 ctattaaagt aagagttctc tacctcacag tttccacaaa aattagctct agagagaaaa
     5581 aacaaaaata ttacagaatt actgaggaaa atataggata tttttatacc tttggtgtgg
     5641 gaaggtcttt tctaaacaac atgaaaccta aaagatataa taagggagaa gataaacaga
     5701 ttttaccacc aaaaatatat tgaaagtttg catatgatgg aaaccaccaa ggttaaaaca
     5761 caaatgacag atttgggaga aaatatttgc agcacttcaa aaattggtga gtacagttac
     5821 tttaggagaa tagcttgctt tgggctcctt ggagcaagtc actggggcct gctaagcagc
     5881 gacctaaaga ttcagcagtg accagctgag ttcttccagg tcatccaagg gcgttgctgc
     5941 cagcaccagg ccagggcgcg tggaatcctg tctacatcat agtgaaagca tgaagtttat
     6001 cagtgtgaag tgcttagcac agtgcctggt acgtataaga gctcagtaaa tatgaactat
     6061 aatcgtatta gtaaaggatt ctgagcggtt acactatagc aggcgttatt tgcaagtata
     6121 atgtaatttg taatcaaatg ataagggaga atctgtgaac ccccgaggaa attagcagaa
     6181 taaaggctgt tctctctgga
//
LOCUS       XM_032619814            6323 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mannosidase alpha class 2A member 2
            (MAN2A2), transcript variant X6, mRNA.
ACCESSION   XM_032619814
VERSION     XM_032619814.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6323
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6323
                     /gene="MAN2A2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 long SRA reads, 2 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747493"
     CDS             357..3884
                     /gene="MAN2A2"
                     /codon_start=1
                     /product="alpha-mannosidase 2x isoform X3"
                     /protein_id="XP_032475705.1"
                     /db_xref="GeneID:116747493"
                     /translation="MKLKKQVTVCGAAIFCVAVFSLYLMLDRVQHDPTRHQNGGNFPR
                     SQISVLQNRIEQLEQLLEENHEIISHIKDSVLELTANVEGPPALLPYYMSNGSWVVPP
                     EPRPSFFSISPQDCQFALGVRGQKPELQMLTVSEELPFDNVDGGVWKQGFEISYSPHD
                     WDTEDLQVFVVPHSHNDPGWLKTFDKYYTEQTQHILNNMVSKLQEDPRRRFIWAEVSF
                     FAKWWDNINAQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALVDQLIEGHQWLEK
                     NLGATPRSGWAVDPFGYSPTMPYLLRRANLTSMLIQRVHYAIKKHFAATHSLEFMWRQ
                     TWDSDSSTDIFCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRINCPWKVPPRAIT
                     ETNVAERAGLLLDQYRKKSRLFRSNVLLVPLGDDFRYDKPQEWDAQFFNYQRLFDFLN
                     SKPDLHVQAQFGTLSDYFDALYKRTGVEPGAQPPGFPVLSGDFFSYADREDHYWTGYY
                     TSRPFYKSLDRVLEAHLRGAEILYSLAVAHARRSGVASQYPLSNFALLTEARRTLGLF
                     QHHDAITGTAKEAVVVDYGIRLLRSLVNLKQVIINAAHYLVLGDKKSYHFDPESPFLQ
                     MDDTRLNHDALPERTVIQLDSSPRYVVLFNPLEQERLSVVSLLVSSPRVRVLTEEGQP
                     LAVQVSAHWSSATDMVPDVYQVSVPVRLPALGLGVLQLQLGLDGPRTLPSSVRVYLHG
                     RQLSVSRHEAFPLRVIDSGTSDFALSNRYMQVWFSGLTGLLKSIRRVDEEQEQRVGME
                     FLIYGTRSSKDKSGAYLFLPDGEAKPYIPKDPPVLRITEGPFFSEVVAYYEHVHQVVR
                     LYNLPGVEGLSLDVSSLVDIRDCVNKELALRLHTDIDSQGTFFTDLNGFQVQPRRYRK
                     KLPLQANFYPMPVMACLQDAQSRLTLHAAQALGVSSLHDGQLEVILDRRLMQDDNRGL
                     GQGLKDNKRTCNHFRLLLERRTLGREPGFFSKLAAMFRGLIFHSSRNGHREVQDGPST
                     SYPSLLSHLTSMYLNTPVLALPVAKRQPPGPALCSFRPLASSLPCDFHLLNLRTLQAE
                     DDSLPSAETALLLHRKGFDCGLEAKNLGFNCTTSQGKVALGSLFRGLDVVFLQPTSLT
                     LLYPLASPSNSTDIYLEPMEIATFRLRLG"
     misc_feature    762..3878
                     /gene="MAN2A2"
                     /note="alpha-mannosidase; Region: PLN02701"
                     /db_xref="CDD:178304"
ORIGIN      
        1 ggtttggtag ctgttgggtg tgtgacttgg ggaagaggaa gagagatcag gaagatatac
       61 aggcttcttg accagatggt ggtgttattt ctgaattagg atcccaggca gaggagcaga
      121 gctgcaggaa gcatgctcca cctactttgg cctggactca gcctcccagg gctaaaaata
      181 ttgcccggag gctcctgagc ggaataagat cgcgctaaat agagcacaac cctgcagagg
      241 cgacagagct cctcagcccg agggctggag gaagactcct gagctgccgc tcccgccgcc
      301 gctcagccgg cagctagctg tctccctccg cccagcaggt gtgtgtggag gccattatga
      361 agctgaaaaa gcaggtgaca gtgtgtgggg ctgccatctt ctgtgtggct gtcttctcac
      421 tctacctcat gctggatcga gtgcagcatg atcccacccg acaccagaac ggtgggaact
      481 tcccccggag tcagatttct gtgctccaga accgcattga acagctggag cagctgttgg
      541 aggagaatca tgagatcatc agccacatca aggactctgt gctggagctg acggccaacg
      601 tggagggccc acctgccctg ctgccgtact atatgtccaa tggctcctgg gtggtgccac
      661 cagagccccg acccagcttc ttctccatct cccctcaaga ctgccaattt gctttggggg
      721 tccggggcca gaaaccagag ctgcagatgc tgactgtatc agaggagtta ccatttgaca
      781 acgtggatgg cggcgtgtgg aagcaaggct ttgagatctc ttatagcccg cacgactggg
      841 acactgaaga cctgcaggtg tttgtggtcc ctcactctca caatgaccca ggctggctca
      901 agacctttga caagtactac acagagcaga cacagcacat tctcaacaac atggtgtcca
      961 agctgcaaga ggacccccgg cggcgcttca tctgggcgga agtctccttc ttcgccaagt
     1021 ggtgggacaa catcaatgcc caaaagagag cagcagtccg aaggctggtg ggaaacgggc
     1081 agctggagat tgcaacagga ggctgggtaa tgccggatga ggccaactcc cactactttg
     1141 cattggttga ccagctcatt gagggacacc agtggctgga gaaaaacctc ggtgcaaccc
     1201 cgcgctcagg ctgggcagtg gacccctttg gatacagccc caccatgcct tacctgctgc
     1261 gccgtgccaa cctgaccagc atgctgattc agagggtaca ttatgctatc aagaagcact
     1321 ttgctgccac ccacagcctg gagttcatgt ggaggcagac ctgggattcg gactccagca
     1381 cagacatctt ctgccacatg atgcctttct acagctatga cgtcccccat acatgtggcc
     1441 cggatcccaa gatctgctgc cagtttgatt tcaagcgctt gcctgggggg cgcatcaact
     1501 gcccttggaa ggtgccaccc cgggctatca cagagacaaa tgtggccgag agggcaggcc
     1561 tgctcctgga ccagtacagg aagaagtccc ggctcttccg aagcaacgtc ctcctggtgc
     1621 cgctgggcga tgacttccga tatgacaagc cccaggagtg ggatgcccag ttcttcaact
     1681 accagcggct cttcgacttc cttaacagca agcctgatct ccacgtgcag gcccagtttg
     1741 gcaccctctc cgactatttt gatgctctat ataagaggac aggggtggag ccaggggccc
     1801 agcctccagg gtttcctgtg ctgagtgggg atttcttctc ctacgcggac cgggaggacc
     1861 attactggac aggctattac acttcacggc ctttctacaa gagcttggac cgtgtcctgg
     1921 aagcgcacct gcggggggca gagattctgt acagcctggc tgtggctcat gcccggcgct
     1981 ctggagtggc cagccagtac ccgctctcaa actttgccct tctgacggaa gctcggcgca
     2041 cactgggact cttccagcac cacgacgcta tcactggcac tgccaaggag gcagttgttg
     2101 tggactatgg gatcaggctt ctgcgctccc ttgtcaacct gaagcaggtc atcattaacg
     2161 cagctcacta tctggtgctg ggggacaaga aaagctacca ctttgaccct gagtcaccct
     2221 tcctgcaaat ggatgacacc cgcttaaatc acgatgccct accagagcgc acagtgatcc
     2281 agctggattc ctcacccagg tacgtggtgc tgttcaaccc actggaacag gaacggctca
     2341 gcgtggtgtc ccttctggtc agctcacccc gggtgcgggt ccttacagag gagggtcagc
     2401 ccctggctgt gcaggtcagc gcgcattgga gctctgccac tgacatggtc cctgacgtct
     2461 accaggtgtc tgtgcccgtc cgcctgccgg cgctgggcct gggcgtgctg cagctgcagc
     2521 tgggtctgga cgggccccgc accctgccct cctccgtgcg tgtctacctg catgggcggc
     2581 agctgtccgt cagcaggcac gaggcgttcc ctctacgcgt cattgactct ggcaccagcg
     2641 acttcgccct cagcaaccgc tatatgcagg tctggttctc aggcctcact gggctcctca
     2701 agagcatccg aagggtggac gaggagcagg agcagcgggt gggcatggag ttcctcatct
     2761 atggcacccg ctcgtccaaa gacaagagtg gagcctacct cttcctgcct gatggcgagg
     2821 ccaagcccta catccccaag gaccctcccg tgctgcgcat cacggaaggc cctttcttct
     2881 cagaggtggt ggcctactat gagcacgttc accaggtagt ccggctttat aacctgccag
     2941 gggtggaggg gctgtctctg gacgtgtcat ccctggtgga catccgggac tgcgtcaaca
     3001 aggagctggc cctgcgcctc cacacagaca ttgacagcca gggcaccttc ttcacggacc
     3061 tcaatggctt tcaggtgcag ccccggcggt atcggaagaa gctgcccctg caggccaact
     3121 tctaccccat gccggtcatg gcctgcctcc aggacgcaca gagccgcctc acactgcacg
     3181 ctgcccaggc cctgggcgtc tccagcctcc acgatggcca gctggaggtg atcttggacc
     3241 ggcgactaat gcaggacgac aaccgaggcc tgggccaagg gctcaaggac aacaagagaa
     3301 cctgcaacca tttccgtctc ctgttggaac ggcgaaccct gggcagggag cctggctttt
     3361 tctccaaact ggcagccatg tttaggggct tgatctttca cagcagcagg aacgggcacc
     3421 gagaggtcca agatggcccc tctaccagct acccgtccct cctcagtcac ctgacttcca
     3481 tgtacctgaa cacccctgtg ctcgccctgc ccgtggccaa gaggcagccc ccaggccctg
     3541 ctctgtgctc atttcgtcct ctggcttcct ctctgccctg tgacttccac ctgctcaacc
     3601 tgcggacgct ccaggcagag gatgatagct tgccctcagc cgaaactgcg ctcctcttac
     3661 accgcaaggg ttttgactgt ggcctcgagg ccaagaactt gggcttcaac tgcaccacaa
     3721 gccaaggcaa ggtggccctg ggaagcctct tccgtggctt ggatgtggtt ttcctgcagc
     3781 caacctcctt gacattgctg taccccttgg cctcgccctc caacagcact gacatctatt
     3841 tggagcccat ggagatcgcc acctttcgcc tccgcctggg ctagggcttc ttgtggcctg
     3901 aagagaaagt tcatccacag agacggcctt ttcacataag atcgggttgg acatgccacc
     3961 ctgggtctcc tgtcctgatc tacctctcag aactgtgaca gactgggctc tgccctcatt
     4021 ttctctttat cgttgcttct gtgttcgggg gcaacccaca gcccagtgtt gggtggttag
     4081 ggcaggcgcc agtgagttgt aggagagaag gcccttggtc agagtgggtg gtgccagcct
     4141 ctgctttggg ttgtgcgtgc ccacctagtt gggtgcaggc tcaagcaccc atcctttccc
     4201 ttgaatggga tggaggagaa gcaggggagc ctgagtgggt aatagcccag cgtcagggtc
     4261 acagtagtca agagctggct ctcggggagt cctgtggttg tgtaagggct acatgtcctg
     4321 gtgtgacagg caggagcaga gcactgccag gaggaggggg ctggggaccg cgagttagca
     4381 gtggggtgga ggagtagcag gaatcgctgc tttctgtgac ggctccactc ttagtgctcc
     4441 ctgaccctca cgccctggcc aggcgctgca gtgtggcagg aaggactcat gaagcctgtc
     4501 atgaccggag ctcatgggac acttcaggta ccaaaacccc atctcagact gggcacttgg
     4561 tctgtgtgtt gatttgtgga atggtggcag aggccaccct acttgactcc tctttggttc
     4621 ctgcactctg tacaccactg tcccgaagag ctgcttccca tcatgggggc gtttgatcgg
     4681 gcttgtttcc tttccctgga aagaaagtga agcctccagc ttgcggtggg caactcgaga
     4741 aagctttcgt catcattcct acagtcagcc ctgaagcttc gccttgttca tccttccaca
     4801 gaagtattca cttcctggtg cggggactag ggagatgtac actaaattag gaggcaccgt
     4861 ggctgctcat tagccttcac tgcagcttcg attattagaa aaaaatttat gatagtctct
     4921 agagatgctg aaacgatatt tggtaaaatt taaaatctat cccttattaa actcttagta
     4981 agttaagatt acaaagaaac atcctaacct agataaaggt gtctctatct gaaaccaaca
     5041 gtcagtggca ttctaaagtg tcagatacca ccggcattcc cagtaaagtc agaaatgagt
     5101 caaggacata ctattattta gctgtgttct ggcactacta aacccctgca gtgtggcaga
     5161 tgagagagat gagggagggt tacagaacgc ccaacctgta caatccagca ggatcagctg
     5221 aagaccttaa cagagcaaac aaggcacatc acgtttctat aaagattctg gttctctcca
     5281 gatcagctca taaattcaat gtattccagt gagattggat actttttgga atttaatggg
     5341 ttctaacgtt catttggaag actaagtgtg tgagaatacc aagaaaattc tgaatgacag
     5401 tgagtccggg gcggtggtgc tcaggtgggt aaaagacact tgtcctacga gatttcccag
     5461 ggtactctcg accgaccatg agttcagtca gtgtgacctg gagtgggatc agactgctgg
     5521 acccaaaggg agagcctagc atcagaccca ggtgtgaggg gatttggtac aggacccaag
     5581 gagtatttta agtgggaaaa agatggacta tttaataaag agtactttaa gataactgcc
     5641 tatctattaa agtaagagtt ctctacctca cagtttccac aaaaattagc tctagagaga
     5701 aaaaacaaaa atattacaga attactgagg aaaatatagg atatttttat acctttggtg
     5761 tgggaaggtc ttttctaaac aacatgaaac ctaaaagata taataaggga gaagataaac
     5821 agattttacc accaaaaata tattgaaagt ttgcatatga tggaaaccac caaggttaaa
     5881 acacaaatga cagatttggg agaaaatatt tgcagcactt caaaaattgg tgagtacagt
     5941 tactttagga gaatagcttg ctttgggctc cttggagcaa gtcactgggg cctgctaagc
     6001 agcgacctaa agattcagca gtgaccagct gagttcttcc aggtcatcca agggcgttgc
     6061 tgccagcacc aggccagggc gcgtggaatc ctgtctacat catagtgaaa gcatgaagtt
     6121 tatcagtgtg aagtgcttag cacagtgcct ggtacgtata agagctcagt aaatatgaac
     6181 tataatcgta ttagtaaagg attctgagcg gttacactat agcaggcgtt atttgcaagt
     6241 ataatgtaat ttgtaatcaa atgataaggg agaatctgtg aacccccgag gaaattagca
     6301 gaataaaggc tgttctctct gga
//
LOCUS       XM_032619826            3163 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FES proto-oncogene, tyrosine kinase
            (FES), transcript variant X1, mRNA.
ACCESSION   XM_032619826
VERSION     XM_032619826.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3163
                     /gene="FES"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747517"
     CDS             348..2945
                     /gene="FES"
                     /codon_start=1
                     /product="tyrosine-protein kinase Fes/Fps isoform X1"
                     /protein_id="XP_032475717.1"
                     /db_xref="GeneID:116747517"
                     /translation="MGFSSELCSPQGHGAVQQMQEAELRLLEGMRKWMAQRVKSDREY
                     AGLLHHMSLQDSGGQSRGISPQSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKL
                     SLLIRERQHLRKTYNEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQARRKYQEAS
                     KGPGLPCCQDGNPKPAQNCPQVPGEGVATQASVLSPTPLSPNLADKDRDKAKDKYVRS
                     LWKLFAHHNRYVLGVRAAQLHHQHHHQLMLPGLLQSLQDLHQEMACILKEILQEYLEI
                     SSLVQDEVVAIHQEMAAAVAHIQPEAEYQGFLQQYGSTPDVPPCVTFDESLLEEAELL
                     EPGELQLNELTVESVQHTLTSVTEELAMATETVLSRQEVVTQLQHELRTEEQTTHPRE
                     RVQLLGKKQVLQEALQGLQVALCGQAKLQAQQELLQAKLEQLGPGEPLPVLLLQDDRH
                     STSSSEQEREGGRTPTLEILKSHISGIFRPKFSLPPPLQLVPEVQKPLHEQLWYHGAI
                     PRAEVAELLTHSGDFVVRESQGKQEYVLSVLWDGQPRHFIIQYADNLYRLEGDGFPSI
                     PLLIDHLLRSQQPLTKKSGIILNRAVPKDKWALSHEDLVLGEQIGRGNFGEVFSGRLR
                     ADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELV
                     QGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVL
                     KISDFGMSREEADGIYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFS
                     LGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWASEPGQRPSFSTIYQE
                     LQSIRKRHR"
     misc_feature    366..1193
                     /gene="FES"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; Region: BAR; cl12013"
                     /db_xref="CDD:472257"
     misc_feature    order(381..383,390..395,405..407,411..416,423..428,
                     432..437,465..470,474..479,486..491,495..500,507..509,
                     591..593,600..605,1056..1058,1065..1070,1074..1076,
                     1092..1094,1101..1106,1110..1115,1122..1127,1134..1139,
                     1143..1148,1155..1160,1164..1169)
                     /gene="FES"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153369"
     misc_feature    1833..2087
                     /gene="FES"
                     /note="Src homology 2 (SH2) domain found in feline
                     sarcoma, Fujinami poultry sarcoma, and fes-related
                     (Fes/Fps/Fer) proteins; Region: SH2_Fps_family; cd10361"
                     /db_xref="CDD:198224"
     misc_feature    order(1875..1877,1923..1925,1983..1985,1989..1991)
                     /gene="FES"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198224"
     misc_feature    order(1986..1988,2064..2066)
                     /gene="FES"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198224"
     misc_feature    2166..2921
                     /gene="FES"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(2175..2186,2193..2195,2199..2201,2238..2240,
                     2244..2246,2334..2336,2382..2393,2523..2525,2535..2540,
                     2544..2546,2574..2579)
                     /gene="FES"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
ORIGIN      
        1 cgtttccgtg gccgtgtggc cggctgaggc agcggcctgc actgggcagg ggggtgggca
       61 ggcgtcgggg gctcccgccc gccccttccc ctcagccggc ccgccccggg gccggggcca
      121 actgaaaccg caggaggagg aaacgcggaa tcaggaactg gccctgggtg gtgcgggcct
      181 gagtctgagt cggtcctcgg cggccccagg atcagctgcc cacgcgggta actcctgccc
      241 cgaggcccag gaggcagcgg cggcgggcag ggggagcggg gtcagcaagc agtgggcaga
      301 ggcccggcag gcgatcagag agcgggacac aggaccagga ccacactatg ggcttctctt
      361 cggagctgtg cagtccccag ggccacgggg cagtgcagca gatgcaggag gccgagcttc
      421 ggctgctgga gggcatgagg aagtggatgg cccagcgggt caagagtgac agagaatatg
      481 ctgggctgct gcaccacatg tcactgcagg acagcggggg ccagagccgg ggcatcagcc
      541 cccagagccc catcagtcag tcctgggcag agatcaccag ccagacggag ggcctgagcc
      601 ggttgctgag gcagcacgca gaagatctga actcagggcc gctgagcaag ctgagcctgt
      661 tgatccggga gcggcagcac ctgcgcaaga cttacaacga gcagtggcag cagctccagc
      721 aggagctcac caagacccac agccaggaca ttgagaagct gaagagccag taccgagccc
      781 tggcacggga cagtgcccag gcccgacgca agtaccagga ggccagcaaa ggtccggggc
      841 ttccttgctg ccaggatggg aatcccaagc cagcccagaa ctgtccacag gtacccgggg
      901 agggggttgc tacccaggcc tctgtgctgt cacccacgcc tctttccccc aacctggcag
      961 acaaagaccg tgacaaagcc aaggacaagt acgtgcgcag tttgtggaag ctcttcgctc
     1021 accacaaccg ctatgtgctg ggcgtgcggg ccgcgcagct acaccaccag caccaccacc
     1081 agctcatgct gcctggcctg ctccagtccc tgcaggacct gcaccaggag atggcgtgca
     1141 tcttgaagga gatcctgcag gaatacctgg agattagcag cctggtgcag gacgaggtgg
     1201 tggccattca ccaggagatg gctgcagcgg ttgcccacat ccagcccgag gccgagtacc
     1261 aaggcttcct gcaacagtat gggtccacac ctgacgtccc accctgtgtc acctttgatg
     1321 agtcgctgct tgaggaggct gaactgctgg agcccgggga gctgcagctg aacgagctga
     1381 ctgtggaaag cgtgcagcac acgctgacct cagtgacaga ggaactggcc atggccactg
     1441 agacagtgct cagccggcag gaggtggtca ctcagctgca gcacgagctc cggactgagg
     1501 agcagaccac ccacccccgg gagcgggtgc agctgctggg caagaagcag gtgctgcagg
     1561 aggcactgca ggggctgcag gtagcgctgt gtggccaggc caagctgcag gcccagcagg
     1621 agctgctgca ggccaagctg gagcagctgg gccccggtga gcccctgccc gtgctgctgc
     1681 tgcaggacga ccgccactcc acctcgtcct cggagcagga gcgagaaggg ggaaggacac
     1741 ccaccctgga gatccttaag agccacatct caggaatctt ccgccccaag ttctcgctcc
     1801 ccccaccgct gcagctcgtt ccagaggtgc agaagcccct gcatgagcag ctgtggtacc
     1861 acggagccat cccgcgggca gaagtggctg agctgctgac acactctggg gacttcgtgg
     1921 tccgggagag ccagggcaag caggagtacg tgctgtctgt gctgtgggac ggccagcccc
     1981 gacacttcat catccagtat gctgataacc tgtaccgact ggaaggagat ggctttccca
     2041 gcatcccctt gctcatagac cacctgttgc gctcccagca gcccctcacc aagaagagcg
     2101 gtatcatcct gaacagggct gtgcccaagg acaagtgggc actaagccac gaggacctgg
     2161 tgttgggtga gcagattggg cgggggaact ttggcgaagt attcagcgga cgcctgagag
     2221 cggacaacac cctggtggcc gtgaaatctt gccgtgagac gctcccaccc gacctcaagg
     2281 ccaagtttct gcaggaagcg aggattctga agcagtatag ccaccccaac atcgtgcgtc
     2341 tcatcggcgt ctgcacccag aagcagccca tctacatcgt catggagctt gtgcaggggg
     2401 gcgacttcct gaccttcctc cggacagagg gagcccgcct gagggtgaag actctgctgc
     2461 agatggtagg ggacgcggct gcgggcatgg agtatctgga gagcaagtgc tgcatccacc
     2521 gggacctggc cgctcggaac tgcctagtga cagagaagaa tgtcctgaag atcagtgact
     2581 ttgggatgtc ccgggaggaa gccgacggga tctacgcagc ctccggaggt ctcagacaag
     2641 ttcccgtgaa gtggaccgca ccggaggccc tgaactacgg ccgctactcc tccgagagcg
     2701 acgtgtggag ctttggcatc ttgctctggg agactttcag cctgggggcc tccccctacc
     2761 ccaacctcag caatcagcag actcgggagt ttgtggaaaa ggggggccgc ctgccttgcc
     2821 ccgaactgtg ccccgatgct gtgttcagac tcatggagca gtgctgggcc tccgagcccg
     2881 ggcagcgacc cagctttagc accatctacc aggagctgca gagcatccga aagcggcatc
     2941 ggtgagactg gggccccact tctcaagcca gtggcctctg taggcaagat tatacctcct
     3001 caccagctcc aggtcacgcc gctggacagc tcttcatcat cctggactcc agccagcggt
     3061 atctatgctg ccggcaggga tgcagctcca tgtctgctgt gcgtccctgt tcctgccagg
     3121 gattcctctt ccaggcagaa ataataaaaa ccatttgtgc cca
//
LOCUS       XM_032619833            2795 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FES proto-oncogene, tyrosine kinase
            (FES), transcript variant X2, mRNA.
ACCESSION   XM_032619833
VERSION     XM_032619833.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2795
                     /gene="FES"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747517"
     CDS             9..2576
                     /gene="FES"
                     /codon_start=1
                     /product="tyrosine-protein kinase Fes/Fps isoform X2"
                     /protein_id="XP_032475724.1"
                     /db_xref="GeneID:116747517"
                     /translation="MGFSSELCSPQGHGAVQQMQEAELRLLEGMRKWMAQRVKSDREY
                     AGLLHHMSLQDSGGQSRGISPQSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKL
                     SLLIRERQHLRKTYNEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQARRKYQEAS
                     KDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLMLPGLLQSLQDLHQE
                     MACILKEILQEYLEISSLVQDEVVAIHQEMAAAVAHIQPEAEYQGFLQQYGSTPDVPP
                     CVTFDESLLEEAELLEPGELQLNELTVESVQHTLTSVTEELAMATETVLSRQEVVTQL
                     QHELRTEEQTTHPRERVQLLGKKQVLQEALQGLQVALCGQAKLQAQQELLQAKLEQLG
                     PGEPLPVLLLQDDRHSTSSSPGHPLTSVPGLRSRSEKGEGHPPWRSLRATSQESSAPS
                     SRSGWGLWPGAKDKSLVWDHPAWLPPPLQLVPEVQKPLHEQLWYHGAIPRAEVAELLT
                     HSGDFVVRESQGKQEYVLSVLWDGQPRHFIIQYADNLYRLEGDGFPSIPLLIDHLLRS
                     QQPLTKKSGIILNRAVPKDKWALSHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKS
                     CRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR
                     TEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSRE
                     EADGIYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS
                     NQQTREFVEKGGRLPCPELCPDAVFRLMEQCWASEPGQRPSFSTIYQELQSIRKRHR"
     misc_feature    27..725
                     /gene="FES"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma)
                     tyrosine kinase; Region: F-BAR_Fes; cd07685"
                     /db_xref="CDD:153369"
     misc_feature    order(42..44,51..53,72..74,81..86,93..95,102..107,
                     114..119,126..128,138..140,147..149,159..161,243..245,
                     252..254,513..515,525..527,600..602,624..626,633..635,
                     642..647,654..656,666..668,675..677,687..689,699..701,
                     708..713,720..722)
                     /gene="FES"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153369"
     misc_feature    1464..1718
                     /gene="FES"
                     /note="Src homology 2 (SH2) domain found in feline
                     sarcoma, Fujinami poultry sarcoma, and fes-related
                     (Fes/Fps/Fer) proteins; Region: SH2_Fps_family; cd10361"
                     /db_xref="CDD:198224"
     misc_feature    order(1506..1508,1554..1556,1614..1616,1620..1622)
                     /gene="FES"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198224"
     misc_feature    order(1617..1619,1695..1697)
                     /gene="FES"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198224"
     misc_feature    1797..2552
                     /gene="FES"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(1806..1817,1824..1826,1830..1832,1869..1871,
                     1875..1877,1965..1967,2013..2024,2154..2156,2166..2171,
                     2175..2177,2205..2210)
                     /gene="FES"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
ORIGIN      
        1 accacactat gggcttctct tcggagctgt gcagtcccca gggccacggg gcagtgcagc
       61 agatgcagga ggccgagctt cggctgctgg agggcatgag gaagtggatg gcccagcggg
      121 tcaagagtga cagagaatat gctgggctgc tgcaccacat gtcactgcag gacagcgggg
      181 gccagagccg gggcatcagc ccccagagcc ccatcagtca gtcctgggca gagatcacca
      241 gccagacgga gggcctgagc cggttgctga ggcagcacgc agaagatctg aactcagggc
      301 cgctgagcaa gctgagcctg ttgatccggg agcggcagca cctgcgcaag acttacaacg
      361 agcagtggca gcagctccag caggagctca ccaagaccca cagccaggac attgagaagc
      421 tgaagagcca gtaccgagcc ctggcacggg acagtgccca ggcccgacgc aagtaccagg
      481 aggccagcaa agacaaagac cgtgacaaag ccaaggacaa gtacgtgcgc agtttgtgga
      541 agctcttcgc tcaccacaac cgctatgtgc tgggcgtgcg ggccgcgcag ctacaccacc
      601 agcaccacca ccagctcatg ctgcctggcc tgctccagtc cctgcaggac ctgcaccagg
      661 agatggcgtg catcttgaag gagatcctgc aggaatacct ggagattagc agcctggtgc
      721 aggacgaggt ggtggccatt caccaggaga tggctgcagc ggttgcccac atccagcccg
      781 aggccgagta ccaaggcttc ctgcaacagt atgggtccac acctgacgtc ccaccctgtg
      841 tcacctttga tgagtcgctg cttgaggagg ctgaactgct ggagcccggg gagctgcagc
      901 tgaacgagct gactgtggaa agcgtgcagc acacgctgac ctcagtgaca gaggaactgg
      961 ccatggccac tgagacagtg ctcagccggc aggaggtggt cactcagctg cagcacgagc
     1021 tccggactga ggagcagacc acccaccccc gggagcgggt gcagctgctg ggcaagaagc
     1081 aggtgctgca ggaggcactg caggggctgc aggtagcgct gtgtggccag gccaagctgc
     1141 aggcccagca ggagctgctg caggccaagc tggagcagct gggccccggt gagcccctgc
     1201 ccgtgctgct gctgcaggac gaccgccact ccacctcgtc ctcgcctggc cacccgctga
     1261 cgtctgtccc tggcctcagg agcaggagcg agaaggggga aggacaccca ccctggagat
     1321 ccttaagagc cacatctcag gaatcttccg ccccaagttc tcggagtggt tgggggctgt
     1381 ggcctggagc aaaagacaaa agccttgttt gggatcaccc agcctggctc cccccaccgc
     1441 tgcagctcgt tccagaggtg cagaagcccc tgcatgagca gctgtggtac cacggagcca
     1501 tcccgcgggc agaagtggct gagctgctga cacactctgg ggacttcgtg gtccgggaga
     1561 gccagggcaa gcaggagtac gtgctgtctg tgctgtggga cggccagccc cgacacttca
     1621 tcatccagta tgctgataac ctgtaccgac tggaaggaga tggctttccc agcatcccct
     1681 tgctcataga ccacctgttg cgctcccagc agcccctcac caagaagagc ggtatcatcc
     1741 tgaacagggc tgtgcccaag gacaagtggg cactaagcca cgaggacctg gtgttgggtg
     1801 agcagattgg gcgggggaac tttggcgaag tattcagcgg acgcctgaga gcggacaaca
     1861 ccctggtggc cgtgaaatct tgccgtgaga cgctcccacc cgacctcaag gccaagtttc
     1921 tgcaggaagc gaggattctg aagcagtata gccaccccaa catcgtgcgt ctcatcggcg
     1981 tctgcaccca gaagcagccc atctacatcg tcatggagct tgtgcagggg ggcgacttcc
     2041 tgaccttcct ccggacagag ggagcccgcc tgagggtgaa gactctgctg cagatggtag
     2101 gggacgcggc tgcgggcatg gagtatctgg agagcaagtg ctgcatccac cgggacctgg
     2161 ccgctcggaa ctgcctagtg acagagaaga atgtcctgaa gatcagtgac tttgggatgt
     2221 cccgggagga agccgacggg atctacgcag cctccggagg tctcagacaa gttcccgtga
     2281 agtggaccgc accggaggcc ctgaactacg gccgctactc ctccgagagc gacgtgtgga
     2341 gctttggcat cttgctctgg gagactttca gcctgggggc ctccccctac cccaacctca
     2401 gcaatcagca gactcgggag tttgtggaaa aggggggccg cctgccttgc cccgaactgt
     2461 gccccgatgc tgtgttcaga ctcatggagc agtgctgggc ctccgagccc gggcagcgac
     2521 ccagctttag caccatctac caggagctgc agagcatccg aaagcggcat cggtgagact
     2581 ggggccccac ttctcaagcc agtggcctct gtaggcaaga ttatacctcc tcaccagctc
     2641 caggtcacgc cgctggacag ctcttcatca tcctggactc cagccagcgg tatctatgct
     2701 gccggcaggg atgcagctcc atgtctgctg tgcgtccctg ttcctgccag ggattcctct
     2761 tccaggcaga aataataaaa accatttgtg cccat
//
LOCUS       XM_032619841            3037 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FES proto-oncogene, tyrosine kinase
            (FES), transcript variant X3, mRNA.
ACCESSION   XM_032619841
VERSION     XM_032619841.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3037
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3037
                     /gene="FES"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 13
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747517"
     CDS             349..2817
                     /gene="FES"
                     /codon_start=1
                     /product="tyrosine-protein kinase Fes/Fps isoform X3"
                     /protein_id="XP_032475732.1"
                     /db_xref="GeneID:116747517"
                     /translation="MGFSSELCSPQGHGAVQQMQEAELRLLEGMRKWMAQRVKSDREY
                     AGLLHHMSLQDSGGQSRGISPQSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKL
                     SLLIRERQHLRKTYNEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQARRKYQEAS
                     KDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLMLPGLLQSLQDLHQE
                     MACILKEILQEYLEISSLVQDEVVAIHQEMAAAVAHIQPEAEYQGFLQQYGSTPDVPP
                     CVTFDESLLEEAELLEPGELQLNELTVESVQHTLTSVTEELAMATETVLSRQEVVTQL
                     QHELRTEEQTTHPRERVQLLGKKQVLQEALQGLQVALCGQAKLQAQQELLQAKLEQLG
                     PGEPLPVLLLQDDRHSTSSSEQEREGGRTPTLEILKSHISGIFRPKFSLPPPLQLVPE
                     VQKPLHEQLWYHGAIPRAEVAELLTHSGDFVVRESQGKQEYVLSVLWDGQPRHFIIQY
                     ADNLYRLEGDGFPSIPLLIDHLLRSQQPLTKKSGIILNRAVPKDKWALSHEDLVLGEQ
                     IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG
                     VCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHR
                     DLAARNCLVTEKNVLKISDFGMSREEADGIYAASGGLRQVPVKWTAPEALNYGRYSSE
                     SDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWA
                     SEPGQRPSFSTIYQELQSIRKRHR"
     misc_feature    367..1065
                     /gene="FES"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma)
                     tyrosine kinase; Region: F-BAR_Fes; cd07685"
                     /db_xref="CDD:153369"
     misc_feature    order(382..384,391..393,412..414,421..426,433..435,
                     442..447,454..459,466..468,478..480,487..489,499..501,
                     583..585,592..594,853..855,865..867,940..942,964..966,
                     973..975,982..987,994..996,1006..1008,1015..1017,
                     1027..1029,1039..1041,1048..1053,1060..1062)
                     /gene="FES"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153369"
     misc_feature    1705..1959
                     /gene="FES"
                     /note="Src homology 2 (SH2) domain found in feline
                     sarcoma, Fujinami poultry sarcoma, and fes-related
                     (Fes/Fps/Fer) proteins; Region: SH2_Fps_family; cd10361"
                     /db_xref="CDD:198224"
     misc_feature    order(1747..1749,1795..1797,1855..1857,1861..1863)
                     /gene="FES"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198224"
     misc_feature    order(1858..1860,1936..1938)
                     /gene="FES"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198224"
     misc_feature    2038..2793
                     /gene="FES"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(2047..2058,2065..2067,2071..2073,2110..2112,
                     2116..2118,2206..2208,2254..2265,2395..2397,2407..2412,
                     2416..2418,2446..2451)
                     /gene="FES"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
ORIGIN      
        1 ccgtttccgt ggccgtgtgg ccggctgagg cagcggcctg cactgggcag gggggtgggc
       61 aggcgtcggg ggctcccgcc cgccccttcc cctcagccgg cccgccccgg ggccggggcc
      121 aactgaaacc gcaggaggag gaaacgcgga atcaggaact ggccctgggt ggtgcgggcc
      181 tgagtctgag tcggtcctcg gcggccccag gatcagctgc ccacgcgggt aactcctgcc
      241 ccgaggccca ggaggcagcg gcggcgggca gggggagcgg ggtcagcaag cagtgggcag
      301 aggcccggca ggcgatcaga gagcgggaca caggaccagg accacactat gggcttctct
      361 tcggagctgt gcagtcccca gggccacggg gcagtgcagc agatgcagga ggccgagctt
      421 cggctgctgg agggcatgag gaagtggatg gcccagcggg tcaagagtga cagagaatat
      481 gctgggctgc tgcaccacat gtcactgcag gacagcgggg gccagagccg gggcatcagc
      541 ccccagagcc ccatcagtca gtcctgggca gagatcacca gccagacgga gggcctgagc
      601 cggttgctga ggcagcacgc agaagatctg aactcagggc cgctgagcaa gctgagcctg
      661 ttgatccggg agcggcagca cctgcgcaag acttacaacg agcagtggca gcagctccag
      721 caggagctca ccaagaccca cagccaggac attgagaagc tgaagagcca gtaccgagcc
      781 ctggcacggg acagtgccca ggcccgacgc aagtaccagg aggccagcaa agacaaagac
      841 cgtgacaaag ccaaggacaa gtacgtgcgc agtttgtgga agctcttcgc tcaccacaac
      901 cgctatgtgc tgggcgtgcg ggccgcgcag ctacaccacc agcaccacca ccagctcatg
      961 ctgcctggcc tgctccagtc cctgcaggac ctgcaccagg agatggcgtg catcttgaag
     1021 gagatcctgc aggaatacct ggagattagc agcctggtgc aggacgaggt ggtggccatt
     1081 caccaggaga tggctgcagc ggttgcccac atccagcccg aggccgagta ccaaggcttc
     1141 ctgcaacagt atgggtccac acctgacgtc ccaccctgtg tcacctttga tgagtcgctg
     1201 cttgaggagg ctgaactgct ggagcccggg gagctgcagc tgaacgagct gactgtggaa
     1261 agcgtgcagc acacgctgac ctcagtgaca gaggaactgg ccatggccac tgagacagtg
     1321 ctcagccggc aggaggtggt cactcagctg cagcacgagc tccggactga ggagcagacc
     1381 acccaccccc gggagcgggt gcagctgctg ggcaagaagc aggtgctgca ggaggcactg
     1441 caggggctgc aggtagcgct gtgtggccag gccaagctgc aggcccagca ggagctgctg
     1501 caggccaagc tggagcagct gggccccggt gagcccctgc ccgtgctgct gctgcaggac
     1561 gaccgccact ccacctcgtc ctcggagcag gagcgagaag ggggaaggac acccaccctg
     1621 gagatcctta agagccacat ctcaggaatc ttccgcccca agttctcgct ccccccaccg
     1681 ctgcagctcg ttccagaggt gcagaagccc ctgcatgagc agctgtggta ccacggagcc
     1741 atcccgcggg cagaagtggc tgagctgctg acacactctg gggacttcgt ggtccgggag
     1801 agccagggca agcaggagta cgtgctgtct gtgctgtggg acggccagcc ccgacacttc
     1861 atcatccagt atgctgataa cctgtaccga ctggaaggag atggctttcc cagcatcccc
     1921 ttgctcatag accacctgtt gcgctcccag cagcccctca ccaagaagag cggtatcatc
     1981 ctgaacaggg ctgtgcccaa ggacaagtgg gcactaagcc acgaggacct ggtgttgggt
     2041 gagcagattg ggcgggggaa ctttggcgaa gtattcagcg gacgcctgag agcggacaac
     2101 accctggtgg ccgtgaaatc ttgccgtgag acgctcccac ccgacctcaa ggccaagttt
     2161 ctgcaggaag cgaggattct gaagcagtat agccacccca acatcgtgcg tctcatcggc
     2221 gtctgcaccc agaagcagcc catctacatc gtcatggagc ttgtgcaggg gggcgacttc
     2281 ctgaccttcc tccggacaga gggagcccgc ctgagggtga agactctgct gcagatggta
     2341 ggggacgcgg ctgcgggcat ggagtatctg gagagcaagt gctgcatcca ccgggacctg
     2401 gccgctcgga actgcctagt gacagagaag aatgtcctga agatcagtga ctttgggatg
     2461 tcccgggagg aagccgacgg gatctacgca gcctccggag gtctcagaca agttcccgtg
     2521 aagtggaccg caccggaggc cctgaactac ggccgctact cctccgagag cgacgtgtgg
     2581 agctttggca tcttgctctg ggagactttc agcctggggg cctcccccta ccccaacctc
     2641 agcaatcagc agactcggga gtttgtggaa aaggggggcc gcctgccttg ccccgaactg
     2701 tgccccgatg ctgtgttcag actcatggag cagtgctggg cctccgagcc cgggcagcga
     2761 cccagcttta gcaccatcta ccaggagctg cagagcatcc gaaagcggca tcggtgagac
     2821 tggggcccca cttctcaagc cagtggcctc tgtaggcaag attatacctc ctcaccagct
     2881 ccaggtcacg ccgctggaca gctcttcatc atcctggact ccagccagcg gtatctatgc
     2941 tgccggcagg gatgcagctc catgtctgct gtgcgtccct gttcctgcca gggattcctc
     3001 ttccaggcag aaataataaa aaccatttgt gcccatc
//
LOCUS       XM_032619850            2657 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FES proto-oncogene, tyrosine kinase
            (FES), transcript variant X4, mRNA.
ACCESSION   XM_032619850
VERSION     XM_032619850.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2657
                     /gene="FES"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747517"
     CDS             9..2438
                     /gene="FES"
                     /codon_start=1
                     /product="tyrosine-protein kinase Fes/Fps isoform X4"
                     /protein_id="XP_032475741.1"
                     /db_xref="GeneID:116747517"
                     /translation="MGFSSELCSPQGHGAVQQMQEAELRLLEGMRKWMAQRVKSDREY
                     AGLLHHMSLQDSGGQSRGISPQSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKL
                     SLLIRERQHLRKTYNEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQARRKYQEAS
                     KDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLMLPGLLQSLQDLHQE
                     MACILSTPDVPPCVTFDESLLEEAELLEPGELQLNELTVESVQHTLTSVTEELAMATE
                     TVLSRQEVVTQLQHELRTEEQTTHPRERVQLLGKKQVLQEALQGLQVALCGQAKLQAQ
                     QELLQAKLEQLGPGEPLPVLLLQDDRHSTSSSPGHPLTSVPGLRSRSEKGEGHPPWRS
                     LRATSQESSAPSSRSGWGLWPGAKDKSLVWDHPAWLPPPLQLVPEVQKPLHEQLWYHG
                     AIPRAEVAELLTHSGDFVVRESQGKQEYVLSVLWDGQPRHFIIQYADNLYRLEGDGFP
                     SIPLLIDHLLRSQQPLTKKSGIILNRAVPKDKWALSHEDLVLGEQIGRGNFGEVFSGR
                     LRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME
                     LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKN
                     VLKISDFGMSREEADGIYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWET
                     FSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWASEPGQRPSFSTIY
                     QELQSIRKRHR"
     misc_feature    27..677
                     /gene="FES"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; Region: BAR; cl12013"
                     /db_xref="CDD:472257"
     misc_feature    order(42..44,51..56,66..68,72..77,84..89,93..98,126..131,
                     135..140,147..152,156..161,168..170,252..254,261..266,
                     588..590,597..602,606..608,624..626,633..638,642..647,
                     654..659,666..671,675..677)
                     /gene="FES"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153369"
     misc_feature    1326..1580
                     /gene="FES"
                     /note="Src homology 2 (SH2) domain found in feline
                     sarcoma, Fujinami poultry sarcoma, and fes-related
                     (Fes/Fps/Fer) proteins; Region: SH2_Fps_family; cd10361"
                     /db_xref="CDD:198224"
     misc_feature    order(1368..1370,1416..1418,1476..1478,1482..1484)
                     /gene="FES"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198224"
     misc_feature    order(1479..1481,1557..1559)
                     /gene="FES"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198224"
     misc_feature    1659..2414
                     /gene="FES"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; Region: Protein
                     Kinases, catalytic domain; cl21453"
                     /db_xref="CDD:473864"
     misc_feature    order(1668..1679,1686..1688,1692..1694,1731..1733,
                     1737..1739,1827..1829,1875..1886,2016..2018,2028..2033,
                     2037..2039,2067..2072)
                     /gene="FES"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270870"
ORIGIN      
        1 accacactat gggcttctct tcggagctgt gcagtcccca gggccacggg gcagtgcagc
       61 agatgcagga ggccgagctt cggctgctgg agggcatgag gaagtggatg gcccagcggg
      121 tcaagagtga cagagaatat gctgggctgc tgcaccacat gtcactgcag gacagcgggg
      181 gccagagccg gggcatcagc ccccagagcc ccatcagtca gtcctgggca gagatcacca
      241 gccagacgga gggcctgagc cggttgctga ggcagcacgc agaagatctg aactcagggc
      301 cgctgagcaa gctgagcctg ttgatccggg agcggcagca cctgcgcaag acttacaacg
      361 agcagtggca gcagctccag caggagctca ccaagaccca cagccaggac attgagaagc
      421 tgaagagcca gtaccgagcc ctggcacggg acagtgccca ggcccgacgc aagtaccagg
      481 aggccagcaa agacaaagac cgtgacaaag ccaaggacaa gtacgtgcgc agtttgtgga
      541 agctcttcgc tcaccacaac cgctatgtgc tgggcgtgcg ggccgcgcag ctacaccacc
      601 agcaccacca ccagctcatg ctgcctggcc tgctccagtc cctgcaggac ctgcaccagg
      661 agatggcgtg catcttgtcc acacctgacg tcccaccctg tgtcaccttt gatgagtcgc
      721 tgcttgagga ggctgaactg ctggagcccg gggagctgca gctgaacgag ctgactgtgg
      781 aaagcgtgca gcacacgctg acctcagtga cagaggaact ggccatggcc actgagacag
      841 tgctcagccg gcaggaggtg gtcactcagc tgcagcacga gctccggact gaggagcaga
      901 ccacccaccc ccgggagcgg gtgcagctgc tgggcaagaa gcaggtgctg caggaggcac
      961 tgcaggggct gcaggtagcg ctgtgtggcc aggccaagct gcaggcccag caggagctgc
     1021 tgcaggccaa gctggagcag ctgggccccg gtgagcccct gcccgtgctg ctgctgcagg
     1081 acgaccgcca ctccacctcg tcctcgcctg gccacccgct gacgtctgtc cctggcctca
     1141 ggagcaggag cgagaagggg gaaggacacc caccctggag atccttaaga gccacatctc
     1201 aggaatcttc cgccccaagt tctcggagtg gttgggggct gtggcctgga gcaaaagaca
     1261 aaagccttgt ttgggatcac ccagcctggc tccccccacc gctgcagctc gttccagagg
     1321 tgcagaagcc cctgcatgag cagctgtggt accacggagc catcccgcgg gcagaagtgg
     1381 ctgagctgct gacacactct ggggacttcg tggtccggga gagccagggc aagcaggagt
     1441 acgtgctgtc tgtgctgtgg gacggccagc cccgacactt catcatccag tatgctgata
     1501 acctgtaccg actggaagga gatggctttc ccagcatccc cttgctcata gaccacctgt
     1561 tgcgctccca gcagcccctc accaagaaga gcggtatcat cctgaacagg gctgtgccca
     1621 aggacaagtg ggcactaagc cacgaggacc tggtgttggg tgagcagatt gggcggggga
     1681 actttggcga agtattcagc ggacgcctga gagcggacaa caccctggtg gccgtgaaat
     1741 cttgccgtga gacgctccca cccgacctca aggccaagtt tctgcaggaa gcgaggattc
     1801 tgaagcagta tagccacccc aacatcgtgc gtctcatcgg cgtctgcacc cagaagcagc
     1861 ccatctacat cgtcatggag cttgtgcagg ggggcgactt cctgaccttc ctccggacag
     1921 agggagcccg cctgagggtg aagactctgc tgcagatggt aggggacgcg gctgcgggca
     1981 tggagtatct ggagagcaag tgctgcatcc accgggacct ggccgctcgg aactgcctag
     2041 tgacagagaa gaatgtcctg aagatcagtg actttgggat gtcccgggag gaagccgacg
     2101 ggatctacgc agcctccgga ggtctcagac aagttcccgt gaagtggacc gcaccggagg
     2161 ccctgaacta cggccgctac tcctccgaga gcgacgtgtg gagctttggc atcttgctct
     2221 gggagacttt cagcctgggg gcctccccct accccaacct cagcaatcag cagactcggg
     2281 agtttgtgga aaaggggggc cgcctgcctt gccccgaact gtgccccgat gctgtgttca
     2341 gactcatgga gcagtgctgg gcctccgagc ccgggcagcg acccagcttt agcaccatct
     2401 accaggagct gcagagcatc cgaaagcggc atcggtgaga ctggggcccc acttctcaag
     2461 ccagtggcct ctgtaggcaa gattatacct cctcaccagc tccaggtcac gccgctggac
     2521 agctcttcat catcctggac tccagccagc ggtatctatg ctgccggcag ggatgcagct
     2581 ccatgtctgc tgtgcgtccc tgttcctgcc agggattcct cttccaggca gaaataataa
     2641 aaaccatttg tgcccat
//
LOCUS       XM_032619864            4650 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X1, mRNA.
ACCESSION   XM_032619864
VERSION     XM_032619864.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4650
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4650
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             715..3093
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475755.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    811..1035
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    1051..1920
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(1057..1059,1198..1200,1336..1338)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1171..1176,1285..1287,1294..1296,1420..1422,
                     1474..1476,1504..1506,1597..1599,1630..1632,1816..1818)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(1171..1173,1294..1296,1816..1818)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(1615..1617,1705..1707)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1639..1641,1645..1647,1654..1656,1660..1662)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    2164..2424
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    2455..2568
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    2626..>2739
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 gatgctgagg cagggctgtc tggaggcttc aggctctgtg gaagctatat ctacggctca
       61 ccgtggctgg ggatgctgag cagatgaagc ctggtccttt cttggggaat tgtttggttg
      121 tgcctgaagc ccgctttctt tttgggtgct gcaaggtaat taaataatca cctttaccac
      181 caagcagctg cagctccatc cacaatgtcc cggaacttgg gctggacgca gatgaaccca
      241 gtcttgattt gggagttcca gtatggctca cagcactgtg gtcaggagat ggtctttctt
      301 gacatctgga cccaagaggc tgctcttgtg gcaagaaggg gagaagaggg cctgtttcaa
      361 tctggctcag cccctagggc tccacatcct ctgttaaatg aggggcttgg gtttccttca
      421 ccccctaggg ctgaatgtct ggctgtccag ccattgctca gaccagcttt ccggaacttg
      481 gtcgcccaag gcatcatggg gctgtggctt ccaggcctgt ccgggaaccc tgtggactct
      541 gcccatccag gagccggcag ccctcatcct ccccgcgcag tcccgcccgt cttggtccca
      601 tgcccccgcc agtcagcccc gggccacagg cagtgagcag gcacgcggga gccgaggccc
      661 tgtgaccagg ccaaggagac aggggctccg gggtcccggc cacctgtccc ccccatggag
      721 ctgaggccct ggttgctatg ggtggtagca gcagcaggag ccttggtcct gctggcggcc
      781 gatgcccgtg gccagaaggt cttcaccaat acctgggccg tgcgcattcc tggaggccca
      841 gccgtggctg acagtgtggc acgcaagcat ggcttcctca acctgggcca gatcttcggc
      901 gactattacc acttctggca tcgagcggtg acaaagcggt ccctgtcacc tcaccgcccg
      961 cggcacagcc ggctgcagcg ggaacctcaa gtacagtggc tggagcagca ggtggcaaag
     1021 cgacggacca aacgggacgt gtaccaggag cccacggacc ccaagtttcc ccagcagtgg
     1081 tacctgtctg gtgtcaccca gcgggacctg aacgtgaagg aggcctgggc ccagggctac
     1141 acggggcgtg gcatcgtggt ctccattctg gacgatggca tcgagaagaa ccacccggac
     1201 ttggcaggca attatgatcc tggggccagc ttcgatgtca atgaccagga ccctgacccc
     1261 cagcctcggt acacgcagat gaatgacaac aggcatggca cacggtgtgc aggcgaggtg
     1321 gccgcagtgg ccaacaacgg tgtctgtggc gtaggcgtgg cctacaatgc ccgtattgga
     1381 ggggtgcgca tgctggacgg tgaagtgaca gatgcggtag aggcacgctc gctgggcctg
     1441 aatcccaacc acatccacat ctacagcgcc agttggggcc ccgaggacga cggcaagacc
     1501 gtggatgggc cagcccgcct tgctgaggag gccttcttcc ggggggtcag ccagggccgc
     1561 ggggggctgg gctccatctt tgtctgggcc tctgggaacg ggggccggga acatgacagc
     1621 tgcaactgcg acggctacac caacagcatc tacacgctgt ccatcagcag cgccacgcag
     1681 tccggcaacg tgccctggta cagtgaggcc tgctcgtcca cgctggccac aacgtacagc
     1741 agtggaaacc agaacgagaa gcagatcgtg accactgatc tgcggcagaa gtgtacggag
     1801 tctcacacag gcacctctgc ctctgccccc ttggcagcgg gcatcatcgc tctcaccctg
     1861 gaggccaata agaacctcac ctggcgggac atgcagcacc tggtggtaca gacctcaaag
     1921 ccagcccacc tcaatgctaa cgactgggcc accaatggtg tgggccgcaa agtgagccat
     1981 tcgtatggct acgggttact ggacgcaggt gccatggtgg ctctggccca gaactggacg
     2041 acggtgaccc cccagcggaa gtgcatcatc gacatcctca ctgagcccaa ggacatcggg
     2101 aagcggctgg aggtgcggaa gactgtgacc gcctgcgtgg gggagcccag ccacatcacg
     2161 cggctggaac acactcaggc gcggctcacc ctgtcctaca accgccgtgg tgacctggcc
     2221 atccacctgg tcagccccat gggcacccgc tccaccctgc tggccgccag gccgcacgac
     2281 tactctgcag acgggtttaa cgactgggcc ttcatgacga cccattcctg ggacgaggac
     2341 ccctctggcg agtgggtcct ggagatagaa aacaccagtg aagcaaataa ctatgggaca
     2401 ctgaccaagt tcaccctcgt gctgtacggc acggcccccg aggggctgcc cacacctcct
     2461 gagagcatcg gctgcaagac cctcacgtcc agccaggcct gtgtggtgtg cgaggaaggc
     2521 ttctccctgc accagaagag ctgtgtccag cgctgccctc caggcttcgc tccccaagtc
     2581 ctcgacacgc actacagcac cgagaacaac gtggagatca tccgggccag cgtctgtgcc
     2641 ccctgccacg cctcgtgtgc cacgtgccag gggccagccc ccacagactg cctcagctgc
     2701 cccagccacg cctccctgga ccctgtggaa cagacatgct cccggcaaag ccagagcagc
     2761 cgtgagtcgc cgcagccgca gcagccgcca cctatggagg tggaggcaga gccgcggctg
     2821 cgggaggggc tgctgccctc acacctgccc gaggtggtgg ccggcctcag ctgcgccttc
     2881 atcgtgctgg tcttcgtcac tgtcttcctg gtcctgcagc tgcgctcggg cttcagcttc
     2941 cgaggggtga aggtgtacac catggaccgt ggcctcatct cctacaaggg gctgcccccc
     3001 gaagcctggc aggaggagtg cccatccgac tcagaagagg acgagggccg gggcgagagg
     3061 accgccttta tcaaagacca gagcgccctt tgacgagcgc ctactgcccg ccccttcgag
     3121 cccatcccct cctggggcac tttttaattc accaaagtat ttttttatct tgggactggg
     3181 tttggacccc agctgggagg caagagaggc agagacggct tcccacccta cccttgggcc
     3241 ccccggctgc ctgaggtggg accccaggac cagctgggga gcaggggagg gcctctgccc
     3301 acccccagca cgcctgcgtg tggagaaagg agtgaaacct ttagggcagc tttccaaggt
     3361 ccaggcccca gccagagttc cctgcggagt gaagaggggc agcccttccc ttatgggatt
     3421 cctgacccgg gctgcagttc tcgccccttc cctgtccctc taaagcaata atggtcccca
     3481 tccaggcagc agggaggctg gcctaggggg tatttgaagg aggaggccac ctctctaagg
     3541 gcttttgcat ccctgacccc gtcccccacc tctggtgagc ctcgggcgga agcagtaagc
     3601 gaaggaaggg accaaggcaa ggcaggcact tccagggtgc acacgtgtgt gtgtcccttt
     3661 gcccacctcc actacagctg gctgcctgct gagcgaggct ggcccggccc cgtgctggtg
     3721 tgctgaccac cctcccctct ctggcaccct ctcctcctgc cagggcccaa gtccctgttt
     3781 tctgagcccg gggctgcctg ggctgttggc actcacagtc ccagagcccc tgggtgggtg
     3841 gtggggaggg acggtggccc agccggcctc tcccgcctcc cacccgatgc tgctttcccc
     3901 tgtggggatc tcaggggctg tttgaggata tattttcact ttgtgattat ttcactttag
     3961 atgctgattt tttttttttt tttttggtat ttttaatggg ggtagcagct ggaccatcca
     4021 ccttcccaca cccactgtcc accctgctgt tccccccggc tgccctggcc ctgaggtgtg
     4081 ggggtctgca gcgtgttgct gaggagtagc tgagccccag gtcctgaaga gacaggccag
     4141 gccaggcggg ccctaggaaa ggaggagtac gatagaaggg gcaggctgtc gtccatttca
     4201 gatggggctc ctcgtgccaa gggctcatgg gtcagtggtt ctccaagtgc caggggtggg
     4261 caggcagtgg cactgagccc cctccaacac tgtgccctgg tggagaaagc actgacctgt
     4321 cctgcccccc aaggccccct cttctgacgt gccttttgta cccctcccat taggacaatc
     4381 agtcccctcc cgtttgggag cccccttttc tttctctccc ctagcccctc ctgacaccca
     4441 gccacctgcc caggggcacc cccgcctctc ccatcccccc cacccttgtg gccagcccag
     4501 ctggttttgt aagatactgg gttggtgcac agtgattttt ttttttttct tgtaatttaa
     4561 acaggcccag cattgttggt tctatttaat ggacacgagg taatgttaga ggttttaaag
     4621 cgattaaacg tgcagactat gcaaaccagg
//
LOCUS       XM_032619872            4423 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X2, mRNA.
ACCESSION   XM_032619872
VERSION     XM_032619872.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4423
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4423
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             488..2866
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475763.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    584..808
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    824..1693
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(830..832,971..973,1109..1111)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(944..949,1058..1060,1067..1069,1193..1195,
                     1247..1249,1277..1279,1370..1372,1403..1405,1589..1591)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(944..946,1067..1069,1589..1591)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(1388..1390,1478..1480)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1412..1414,1418..1420,1427..1429,1433..1435)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    1937..2197
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    2228..2341
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    2399..>2512
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 gatgctgagg cagggctgtc tggaggcttc aggctctgtg gaagctatat ctacggctca
       61 ccgtggctgg ggatgctgag cagatgaagc ctggtccttt cttggggaat tgtttggttg
      121 tgcctgaagc ccgctttctt tttgggtgct gcaagggctg aatgtctggc tgtccagcca
      181 ttgctcagac cagctttccg gaacttggtc gcccaaggca tcatggggct gtggcttcca
      241 ggcctgtccg ggaaccctgt ggactctgcc catccagggt gaggaggagc tgcattgtgg
      301 atgcctcctg ccatcagctg tcagagccgg cagccctcat cctccccgcg cagtcccgcc
      361 cgtcttggtc ccatgccccc gccagtcagc cccgggccac aggcagtgag caggcacgcg
      421 ggagccgagg ccctgtgacc aggccaagga gacaggggct ccggggtccc ggccacctgt
      481 cccccccatg gagctgaggc cctggttgct atgggtggta gcagcagcag gagccttggt
      541 cctgctggcg gccgatgccc gtggccagaa ggtcttcacc aatacctggg ccgtgcgcat
      601 tcctggaggc ccagccgtgg ctgacagtgt ggcacgcaag catggcttcc tcaacctggg
      661 ccagatcttc ggcgactatt accacttctg gcatcgagcg gtgacaaagc ggtccctgtc
      721 acctcaccgc ccgcggcaca gccggctgca gcgggaacct caagtacagt ggctggagca
      781 gcaggtggca aagcgacgga ccaaacggga cgtgtaccag gagcccacgg accccaagtt
      841 tccccagcag tggtacctgt ctggtgtcac ccagcgggac ctgaacgtga aggaggcctg
      901 ggcccagggc tacacggggc gtggcatcgt ggtctccatt ctggacgatg gcatcgagaa
      961 gaaccacccg gacttggcag gcaattatga tcctggggcc agcttcgatg tcaatgacca
     1021 ggaccctgac ccccagcctc ggtacacgca gatgaatgac aacaggcatg gcacacggtg
     1081 tgcaggcgag gtggccgcag tggccaacaa cggtgtctgt ggcgtaggcg tggcctacaa
     1141 tgcccgtatt ggaggggtgc gcatgctgga cggtgaagtg acagatgcgg tagaggcacg
     1201 ctcgctgggc ctgaatccca accacatcca catctacagc gccagttggg gccccgagga
     1261 cgacggcaag accgtggatg ggccagcccg ccttgctgag gaggccttct tccggggggt
     1321 cagccagggc cgcggggggc tgggctccat ctttgtctgg gcctctggga acgggggccg
     1381 ggaacatgac agctgcaact gcgacggcta caccaacagc atctacacgc tgtccatcag
     1441 cagcgccacg cagtccggca acgtgccctg gtacagtgag gcctgctcgt ccacgctggc
     1501 cacaacgtac agcagtggaa accagaacga gaagcagatc gtgaccactg atctgcggca
     1561 gaagtgtacg gagtctcaca caggcacctc tgcctctgcc cccttggcag cgggcatcat
     1621 cgctctcacc ctggaggcca ataagaacct cacctggcgg gacatgcagc acctggtggt
     1681 acagacctca aagccagccc acctcaatgc taacgactgg gccaccaatg gtgtgggccg
     1741 caaagtgagc cattcgtatg gctacgggtt actggacgca ggtgccatgg tggctctggc
     1801 ccagaactgg acgacggtga ccccccagcg gaagtgcatc atcgacatcc tcactgagcc
     1861 caaggacatc gggaagcggc tggaggtgcg gaagactgtg accgcctgcg tgggggagcc
     1921 cagccacatc acgcggctgg aacacactca ggcgcggctc accctgtcct acaaccgccg
     1981 tggtgacctg gccatccacc tggtcagccc catgggcacc cgctccaccc tgctggccgc
     2041 caggccgcac gactactctg cagacgggtt taacgactgg gccttcatga cgacccattc
     2101 ctgggacgag gacccctctg gcgagtgggt cctggagata gaaaacacca gtgaagcaaa
     2161 taactatggg acactgacca agttcaccct cgtgctgtac ggcacggccc ccgaggggct
     2221 gcccacacct cctgagagca tcggctgcaa gaccctcacg tccagccagg cctgtgtggt
     2281 gtgcgaggaa ggcttctccc tgcaccagaa gagctgtgtc cagcgctgcc ctccaggctt
     2341 cgctccccaa gtcctcgaca cgcactacag caccgagaac aacgtggaga tcatccgggc
     2401 cagcgtctgt gccccctgcc acgcctcgtg tgccacgtgc caggggccag cccccacaga
     2461 ctgcctcagc tgccccagcc acgcctccct ggaccctgtg gaacagacat gctcccggca
     2521 aagccagagc agccgtgagt cgccgcagcc gcagcagccg ccacctatgg aggtggaggc
     2581 agagccgcgg ctgcgggagg ggctgctgcc ctcacacctg cccgaggtgg tggccggcct
     2641 cagctgcgcc ttcatcgtgc tggtcttcgt cactgtcttc ctggtcctgc agctgcgctc
     2701 gggcttcagc ttccgagggg tgaaggtgta caccatggac cgtggcctca tctcctacaa
     2761 ggggctgccc cccgaagcct ggcaggagga gtgcccatcc gactcagaag aggacgaggg
     2821 ccggggcgag aggaccgcct ttatcaaaga ccagagcgcc ctttgacgag cgcctactgc
     2881 ccgccccttc gagcccatcc cctcctgggg cactttttaa ttcaccaaag tattttttta
     2941 tcttgggact gggtttggac cccagctggg aggcaagaga ggcagagacg gcttcccacc
     3001 ctacccttgg gccccccggc tgcctgaggt gggaccccag gaccagctgg ggagcagggg
     3061 agggcctctg cccaccccca gcacgcctgc gtgtggagaa aggagtgaaa cctttagggc
     3121 agctttccaa ggtccaggcc ccagccagag ttccctgcgg agtgaagagg ggcagccctt
     3181 cccttatggg attcctgacc cgggctgcag ttctcgcccc ttccctgtcc ctctaaagca
     3241 ataatggtcc ccatccaggc agcagggagg ctggcctagg gggtatttga aggaggaggc
     3301 cacctctcta agggcttttg catccctgac cccgtccccc acctctggtg agcctcgggc
     3361 ggaagcagta agcgaaggaa gggaccaagg caaggcaggc acttccaggg tgcacacgtg
     3421 tgtgtgtccc tttgcccacc tccactacag ctggctgcct gctgagcgag gctggcccgg
     3481 ccccgtgctg gtgtgctgac caccctcccc tctctggcac cctctcctcc tgccagggcc
     3541 caagtccctg ttttctgagc ccggggctgc ctgggctgtt ggcactcaca gtcccagagc
     3601 ccctgggtgg gtggtgggga gggacggtgg cccagccggc ctctcccgcc tcccacccga
     3661 tgctgctttc ccctgtgggg atctcagggg ctgtttgagg atatattttc actttgtgat
     3721 tatttcactt tagatgctga tttttttttt ttttttttgg tatttttaat gggggtagca
     3781 gctggaccat ccaccttccc acacccactg tccaccctgc tgttcccccc ggctgccctg
     3841 gccctgaggt gtgggggtct gcagcgtgtt gctgaggagt agctgagccc caggtcctga
     3901 agagacaggc caggccaggc gggccctagg aaaggaggag tacgatagaa ggggcaggct
     3961 gtcgtccatt tcagatgggg ctcctcgtgc caagggctca tgggtcagtg gttctccaag
     4021 tgccaggggt gggcaggcag tggcactgag ccccctccaa cactgtgccc tggtggagaa
     4081 agcactgacc tgtcctgccc cccaaggccc cctcttctga cgtgcctttt gtacccctcc
     4141 cattaggaca atcagtcccc tcccgtttgg gagccccctt ttctttctct cccctagccc
     4201 ctcctgacac ccagccacct gcccaggggc acccccgcct ctcccatccc ccccaccctt
     4261 gtggccagcc cagctggttt tgtaagatac tgggttggtg cacagtgatt tttttttttt
     4321 tcttgtaatt taaacaggcc cagcattgtt ggttctattt aatggacacg aggtaatgtt
     4381 agaggtttta aagcgattaa acgtgcagac tatgcaaacc agg
//
LOCUS       XM_032619881            4880 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X3, mRNA.
ACCESSION   XM_032619881
VERSION     XM_032619881.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4880
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4880
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             945..3323
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475772.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    1041..1265
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    1281..2150
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(1287..1289,1428..1430,1566..1568)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1401..1406,1515..1517,1524..1526,1650..1652,
                     1704..1706,1734..1736,1827..1829,1860..1862,2046..2048)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(1401..1403,1524..1526,2046..2048)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(1845..1847,1935..1937)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1869..1871,1875..1877,1884..1886,1890..1892)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    2394..2654
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    2685..2798
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    2856..>2969
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 cctggtcgcc ggcccggccg aggccgcgcc gccgctcctc cccgcctccg cgcggtgacg
       61 ctgctgccgg gcgcggggac cgcgtcgagc ccaggccccg ccgccgggct ctccgctcgg
      121 ccgaggggcg cccgagccac cgcggcgctc gcctggaaaa gtttccccgc ccgggctccc
      181 tagggatgct gaggcagggc tgtctggagg cttcaggctc tgtggaagct atatctacgg
      241 ctcaccgtgg ctggggatgc tgagcagatg aagcctggtc ctttcttggg gaattgtttg
      301 gttgtgcctg aagcccgctt tctttttggg tgctgcaagg taattaaata atcaccttta
      361 ccaccaagca gctgcagctc catccacaat gtcccggaac ttgggctgga cgcagatgaa
      421 cccagtcttg atttgggagt tccagtatgg ctcacagcac tgtggtcagg agatggtctt
      481 tcttgacatc tggacccaag aggctgctct tgtggcaaga aggggagaag agggcctgtt
      541 tcaatctggc tcagccccta gggctccaca tcctctgtta aatgaggggc ttgggtttcc
      601 ttcaccccct agggctgaat gtctggctgt ccagccattg ctcagaccag ctttccggaa
      661 cttggtcgcc caaggcatca tggggctgtg gcttccaggc ctgtccggga accctgtgga
      721 ctctgcccat ccagggtgag gaggagctgc attgtggatg cctcctgcca tcagctgtca
      781 gagccggcag ccctcatcct ccccgcgcag tcccgcccgt cttggtccca tgcccccgcc
      841 agtcagcccc gggccacagg cagtgagcag gcacgcggga gccgaggccc tgtgaccagg
      901 ccaaggagac aggggctccg gggtcccggc cacctgtccc ccccatggag ctgaggccct
      961 ggttgctatg ggtggtagca gcagcaggag ccttggtcct gctggcggcc gatgcccgtg
     1021 gccagaaggt cttcaccaat acctgggccg tgcgcattcc tggaggccca gccgtggctg
     1081 acagtgtggc acgcaagcat ggcttcctca acctgggcca gatcttcggc gactattacc
     1141 acttctggca tcgagcggtg acaaagcggt ccctgtcacc tcaccgcccg cggcacagcc
     1201 ggctgcagcg ggaacctcaa gtacagtggc tggagcagca ggtggcaaag cgacggacca
     1261 aacgggacgt gtaccaggag cccacggacc ccaagtttcc ccagcagtgg tacctgtctg
     1321 gtgtcaccca gcgggacctg aacgtgaagg aggcctgggc ccagggctac acggggcgtg
     1381 gcatcgtggt ctccattctg gacgatggca tcgagaagaa ccacccggac ttggcaggca
     1441 attatgatcc tggggccagc ttcgatgtca atgaccagga ccctgacccc cagcctcggt
     1501 acacgcagat gaatgacaac aggcatggca cacggtgtgc aggcgaggtg gccgcagtgg
     1561 ccaacaacgg tgtctgtggc gtaggcgtgg cctacaatgc ccgtattgga ggggtgcgca
     1621 tgctggacgg tgaagtgaca gatgcggtag aggcacgctc gctgggcctg aatcccaacc
     1681 acatccacat ctacagcgcc agttggggcc ccgaggacga cggcaagacc gtggatgggc
     1741 cagcccgcct tgctgaggag gccttcttcc ggggggtcag ccagggccgc ggggggctgg
     1801 gctccatctt tgtctgggcc tctgggaacg ggggccggga acatgacagc tgcaactgcg
     1861 acggctacac caacagcatc tacacgctgt ccatcagcag cgccacgcag tccggcaacg
     1921 tgccctggta cagtgaggcc tgctcgtcca cgctggccac aacgtacagc agtggaaacc
     1981 agaacgagaa gcagatcgtg accactgatc tgcggcagaa gtgtacggag tctcacacag
     2041 gcacctctgc ctctgccccc ttggcagcgg gcatcatcgc tctcaccctg gaggccaata
     2101 agaacctcac ctggcgggac atgcagcacc tggtggtaca gacctcaaag ccagcccacc
     2161 tcaatgctaa cgactgggcc accaatggtg tgggccgcaa agtgagccat tcgtatggct
     2221 acgggttact ggacgcaggt gccatggtgg ctctggccca gaactggacg acggtgaccc
     2281 cccagcggaa gtgcatcatc gacatcctca ctgagcccaa ggacatcggg aagcggctgg
     2341 aggtgcggaa gactgtgacc gcctgcgtgg gggagcccag ccacatcacg cggctggaac
     2401 acactcaggc gcggctcacc ctgtcctaca accgccgtgg tgacctggcc atccacctgg
     2461 tcagccccat gggcacccgc tccaccctgc tggccgccag gccgcacgac tactctgcag
     2521 acgggtttaa cgactgggcc ttcatgacga cccattcctg ggacgaggac ccctctggcg
     2581 agtgggtcct ggagatagaa aacaccagtg aagcaaataa ctatgggaca ctgaccaagt
     2641 tcaccctcgt gctgtacggc acggcccccg aggggctgcc cacacctcct gagagcatcg
     2701 gctgcaagac cctcacgtcc agccaggcct gtgtggtgtg cgaggaaggc ttctccctgc
     2761 accagaagag ctgtgtccag cgctgccctc caggcttcgc tccccaagtc ctcgacacgc
     2821 actacagcac cgagaacaac gtggagatca tccgggccag cgtctgtgcc ccctgccacg
     2881 cctcgtgtgc cacgtgccag gggccagccc ccacagactg cctcagctgc cccagccacg
     2941 cctccctgga ccctgtggaa cagacatgct cccggcaaag ccagagcagc cgtgagtcgc
     3001 cgcagccgca gcagccgcca cctatggagg tggaggcaga gccgcggctg cgggaggggc
     3061 tgctgccctc acacctgccc gaggtggtgg ccggcctcag ctgcgccttc atcgtgctgg
     3121 tcttcgtcac tgtcttcctg gtcctgcagc tgcgctcggg cttcagcttc cgaggggtga
     3181 aggtgtacac catggaccgt ggcctcatct cctacaaggg gctgcccccc gaagcctggc
     3241 aggaggagtg cccatccgac tcagaagagg acgagggccg gggcgagagg accgccttta
     3301 tcaaagacca gagcgccctt tgacgagcgc ctactgcccg ccccttcgag cccatcccct
     3361 cctggggcac tttttaattc accaaagtat ttttttatct tgggactggg tttggacccc
     3421 agctgggagg caagagaggc agagacggct tcccacccta cccttgggcc ccccggctgc
     3481 ctgaggtggg accccaggac cagctgggga gcaggggagg gcctctgccc acccccagca
     3541 cgcctgcgtg tggagaaagg agtgaaacct ttagggcagc tttccaaggt ccaggcccca
     3601 gccagagttc cctgcggagt gaagaggggc agcccttccc ttatgggatt cctgacccgg
     3661 gctgcagttc tcgccccttc cctgtccctc taaagcaata atggtcccca tccaggcagc
     3721 agggaggctg gcctaggggg tatttgaagg aggaggccac ctctctaagg gcttttgcat
     3781 ccctgacccc gtcccccacc tctggtgagc ctcgggcgga agcagtaagc gaaggaaggg
     3841 accaaggcaa ggcaggcact tccagggtgc acacgtgtgt gtgtcccttt gcccacctcc
     3901 actacagctg gctgcctgct gagcgaggct ggcccggccc cgtgctggtg tgctgaccac
     3961 cctcccctct ctggcaccct ctcctcctgc cagggcccaa gtccctgttt tctgagcccg
     4021 gggctgcctg ggctgttggc actcacagtc ccagagcccc tgggtgggtg gtggggaggg
     4081 acggtggccc agccggcctc tcccgcctcc cacccgatgc tgctttcccc tgtggggatc
     4141 tcaggggctg tttgaggata tattttcact ttgtgattat ttcactttag atgctgattt
     4201 tttttttttt tttttggtat ttttaatggg ggtagcagct ggaccatcca ccttcccaca
     4261 cccactgtcc accctgctgt tccccccggc tgccctggcc ctgaggtgtg ggggtctgca
     4321 gcgtgttgct gaggagtagc tgagccccag gtcctgaaga gacaggccag gccaggcggg
     4381 ccctaggaaa ggaggagtac gatagaaggg gcaggctgtc gtccatttca gatggggctc
     4441 ctcgtgccaa gggctcatgg gtcagtggtt ctccaagtgc caggggtggg caggcagtgg
     4501 cactgagccc cctccaacac tgtgccctgg tggagaaagc actgacctgt cctgcccccc
     4561 aaggccccct cttctgacgt gccttttgta cccctcccat taggacaatc agtcccctcc
     4621 cgtttgggag cccccttttc tttctctccc ctagcccctc ctgacaccca gccacctgcc
     4681 caggggcacc cccgcctctc ccatcccccc cacccttgtg gccagcccag ctggttttgt
     4741 aagatactgg gttggtgcac agtgattttt ttttttttct tgtaatttaa acaggcccag
     4801 cattgttggt tctatttaat ggacacgagg taatgttaga ggttttaaag cgattaaacg
     4861 tgcagactat gcaaaccagg
//
LOCUS       XM_032619889            4377 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X4, mRNA.
ACCESSION   XM_032619889
VERSION     XM_032619889.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4377
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4377
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             442..2820
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475780.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    538..762
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    778..1647
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(784..786,925..927,1063..1065)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(898..903,1012..1014,1021..1023,1147..1149,
                     1201..1203,1231..1233,1324..1326,1357..1359,1543..1545)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(898..900,1021..1023,1543..1545)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(1342..1344,1432..1434)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1366..1368,1372..1374,1381..1383,1387..1389)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    1891..2151
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    2182..2295
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    2353..>2466
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 gatgctgagg cagggctgtc tggaggcttc aggctctgtg gaagctatat ctacggctca
       61 ccgtggctgg ggatgctgag cagatgaagc ctggtccttt cttggggaat tgtttggttg
      121 tgcctgaagc ccgctttctt tttgggtgct gcaagggctg aatgtctggc tgtccagcca
      181 ttgctcagac cagctttccg gaacttggtc gcccaaggca tcatggggct gtggcttcca
      241 ggcctgtccg ggaaccctgt ggactctgcc catccaggag ccggcagccc tcatcctccc
      301 cgcgcagtcc cgcccgtctt ggtcccatgc ccccgccagt cagccccggg ccacaggcag
      361 tgagcaggca cgcgggagcc gaggccctgt gaccaggcca aggagacagg ggctccgggg
      421 tcccggccac ctgtcccccc catggagctg aggccctggt tgctatgggt ggtagcagca
      481 gcaggagcct tggtcctgct ggcggccgat gcccgtggcc agaaggtctt caccaatacc
      541 tgggccgtgc gcattcctgg aggcccagcc gtggctgaca gtgtggcacg caagcatggc
      601 ttcctcaacc tgggccagat cttcggcgac tattaccact tctggcatcg agcggtgaca
      661 aagcggtccc tgtcacctca ccgcccgcgg cacagccggc tgcagcggga acctcaagta
      721 cagtggctgg agcagcaggt ggcaaagcga cggaccaaac gggacgtgta ccaggagccc
      781 acggacccca agtttcccca gcagtggtac ctgtctggtg tcacccagcg ggacctgaac
      841 gtgaaggagg cctgggccca gggctacacg gggcgtggca tcgtggtctc cattctggac
      901 gatggcatcg agaagaacca cccggacttg gcaggcaatt atgatcctgg ggccagcttc
      961 gatgtcaatg accaggaccc tgacccccag cctcggtaca cgcagatgaa tgacaacagg
     1021 catggcacac ggtgtgcagg cgaggtggcc gcagtggcca acaacggtgt ctgtggcgta
     1081 ggcgtggcct acaatgcccg tattggaggg gtgcgcatgc tggacggtga agtgacagat
     1141 gcggtagagg cacgctcgct gggcctgaat cccaaccaca tccacatcta cagcgccagt
     1201 tggggccccg aggacgacgg caagaccgtg gatgggccag cccgccttgc tgaggaggcc
     1261 ttcttccggg gggtcagcca gggccgcggg gggctgggct ccatctttgt ctgggcctct
     1321 gggaacgggg gccgggaaca tgacagctgc aactgcgacg gctacaccaa cagcatctac
     1381 acgctgtcca tcagcagcgc cacgcagtcc ggcaacgtgc cctggtacag tgaggcctgc
     1441 tcgtccacgc tggccacaac gtacagcagt ggaaaccaga acgagaagca gatcgtgacc
     1501 actgatctgc ggcagaagtg tacggagtct cacacaggca cctctgcctc tgcccccttg
     1561 gcagcgggca tcatcgctct caccctggag gccaataaga acctcacctg gcgggacatg
     1621 cagcacctgg tggtacagac ctcaaagcca gcccacctca atgctaacga ctgggccacc
     1681 aatggtgtgg gccgcaaagt gagccattcg tatggctacg ggttactgga cgcaggtgcc
     1741 atggtggctc tggcccagaa ctggacgacg gtgacccccc agcggaagtg catcatcgac
     1801 atcctcactg agcccaagga catcgggaag cggctggagg tgcggaagac tgtgaccgcc
     1861 tgcgtggggg agcccagcca catcacgcgg ctggaacaca ctcaggcgcg gctcaccctg
     1921 tcctacaacc gccgtggtga cctggccatc cacctggtca gccccatggg cacccgctcc
     1981 accctgctgg ccgccaggcc gcacgactac tctgcagacg ggtttaacga ctgggccttc
     2041 atgacgaccc attcctggga cgaggacccc tctggcgagt gggtcctgga gatagaaaac
     2101 accagtgaag caaataacta tgggacactg accaagttca ccctcgtgct gtacggcacg
     2161 gcccccgagg ggctgcccac acctcctgag agcatcggct gcaagaccct cacgtccagc
     2221 caggcctgtg tggtgtgcga ggaaggcttc tccctgcacc agaagagctg tgtccagcgc
     2281 tgccctccag gcttcgctcc ccaagtcctc gacacgcact acagcaccga gaacaacgtg
     2341 gagatcatcc gggccagcgt ctgtgccccc tgccacgcct cgtgtgccac gtgccagggg
     2401 ccagccccca cagactgcct cagctgcccc agccacgcct ccctggaccc tgtggaacag
     2461 acatgctccc ggcaaagcca gagcagccgt gagtcgccgc agccgcagca gccgccacct
     2521 atggaggtgg aggcagagcc gcggctgcgg gaggggctgc tgccctcaca cctgcccgag
     2581 gtggtggccg gcctcagctg cgccttcatc gtgctggtct tcgtcactgt cttcctggtc
     2641 ctgcagctgc gctcgggctt cagcttccga ggggtgaagg tgtacaccat ggaccgtggc
     2701 ctcatctcct acaaggggct gccccccgaa gcctggcagg aggagtgccc atccgactca
     2761 gaagaggacg agggccgggg cgagaggacc gcctttatca aagaccagag cgccctttga
     2821 cgagcgccta ctgcccgccc cttcgagccc atcccctcct ggggcacttt ttaattcacc
     2881 aaagtatttt tttatcttgg gactgggttt ggaccccagc tgggaggcaa gagaggcaga
     2941 gacggcttcc caccctaccc ttgggccccc cggctgcctg aggtgggacc ccaggaccag
     3001 ctggggagca ggggagggcc tctgcccacc cccagcacgc ctgcgtgtgg agaaaggagt
     3061 gaaaccttta gggcagcttt ccaaggtcca ggccccagcc agagttccct gcggagtgaa
     3121 gaggggcagc ccttccctta tgggattcct gacccgggct gcagttctcg ccccttccct
     3181 gtccctctaa agcaataatg gtccccatcc aggcagcagg gaggctggcc tagggggtat
     3241 ttgaaggagg aggccacctc tctaagggct tttgcatccc tgaccccgtc ccccacctct
     3301 ggtgagcctc gggcggaagc agtaagcgaa ggaagggacc aaggcaaggc aggcacttcc
     3361 agggtgcaca cgtgtgtgtg tccctttgcc cacctccact acagctggct gcctgctgag
     3421 cgaggctggc ccggccccgt gctggtgtgc tgaccaccct cccctctctg gcaccctctc
     3481 ctcctgccag ggcccaagtc cctgttttct gagcccgggg ctgcctgggc tgttggcact
     3541 cacagtccca gagcccctgg gtgggtggtg gggagggacg gtggcccagc cggcctctcc
     3601 cgcctcccac ccgatgctgc tttcccctgt ggggatctca ggggctgttt gaggatatat
     3661 tttcactttg tgattatttc actttagatg ctgatttttt tttttttttt ttggtatttt
     3721 taatgggggt agcagctgga ccatccacct tcccacaccc actgtccacc ctgctgttcc
     3781 ccccggctgc cctggccctg aggtgtgggg gtctgcagcg tgttgctgag gagtagctga
     3841 gccccaggtc ctgaagagac aggccaggcc aggcgggccc taggaaagga ggagtacgat
     3901 agaaggggca ggctgtcgtc catttcagat ggggctcctc gtgccaaggg ctcatgggtc
     3961 agtggttctc caagtgccag gggtgggcag gcagtggcac tgagccccct ccaacactgt
     4021 gccctggtgg agaaagcact gacctgtcct gccccccaag gccccctctt ctgacgtgcc
     4081 ttttgtaccc ctcccattag gacaatcagt cccctcccgt ttgggagccc ccttttcttt
     4141 ctctccccta gcccctcctg acacccagcc acctgcccag gggcaccccc gcctctccca
     4201 tcccccccac ccttgtggcc agcccagctg gttttgtaag atactgggtt ggtgcacagt
     4261 gatttttttt tttttcttgt aatttaaaca ggcccagcat tgttggttct atttaatgga
     4321 cacgaggtaa tgttagaggt tttaaagcga ttaaacgtgc agactatgca aaccagg
//
LOCUS       XM_032619899            4254 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X5, mRNA.
ACCESSION   XM_032619899
VERSION     XM_032619899.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4254
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4254
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             319..2697
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475790.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    415..639
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    655..1524
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(661..663,802..804,940..942)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(775..780,889..891,898..900,1024..1026,1078..1080,
                     1108..1110,1201..1203,1234..1236,1420..1422)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(775..777,898..900,1420..1422)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(1219..1221,1309..1311)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1243..1245,1249..1251,1258..1260,1264..1266)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    1768..2028
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    2059..2172
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    2230..>2343
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 gatgctgagg cagggctgtc tggaggcttc aggctctgtg gaagctatat ctacggctca
       61 ccgtggctgg ggatgctgag cagatgaagc ctggtccttt cttggggaat tgtttggttg
      121 tgcctgaagc ccgctttctt tttgggtgct gcaagagccg gcagccctca tcctccccgc
      181 gcagtcccgc ccgtcttggt cccatgcccc cgccagtcag ccccgggcca caggcagtga
      241 gcaggcacgc gggagccgag gccctgtgac caggccaagg agacaggggc tccggggtcc
      301 cggccacctg tcccccccat ggagctgagg ccctggttgc tatgggtggt agcagcagca
      361 ggagccttgg tcctgctggc ggccgatgcc cgtggccaga aggtcttcac caatacctgg
      421 gccgtgcgca ttcctggagg cccagccgtg gctgacagtg tggcacgcaa gcatggcttc
      481 ctcaacctgg gccagatctt cggcgactat taccacttct ggcatcgagc ggtgacaaag
      541 cggtccctgt cacctcaccg cccgcggcac agccggctgc agcgggaacc tcaagtacag
      601 tggctggagc agcaggtggc aaagcgacgg accaaacggg acgtgtacca ggagcccacg
      661 gaccccaagt ttccccagca gtggtacctg tctggtgtca cccagcggga cctgaacgtg
      721 aaggaggcct gggcccaggg ctacacgggg cgtggcatcg tggtctccat tctggacgat
      781 ggcatcgaga agaaccaccc ggacttggca ggcaattatg atcctggggc cagcttcgat
      841 gtcaatgacc aggaccctga cccccagcct cggtacacgc agatgaatga caacaggcat
      901 ggcacacggt gtgcaggcga ggtggccgca gtggccaaca acggtgtctg tggcgtaggc
      961 gtggcctaca atgcccgtat tggaggggtg cgcatgctgg acggtgaagt gacagatgcg
     1021 gtagaggcac gctcgctggg cctgaatccc aaccacatcc acatctacag cgccagttgg
     1081 ggccccgagg acgacggcaa gaccgtggat gggccagccc gccttgctga ggaggccttc
     1141 ttccgggggg tcagccaggg ccgcgggggg ctgggctcca tctttgtctg ggcctctggg
     1201 aacgggggcc gggaacatga cagctgcaac tgcgacggct acaccaacag catctacacg
     1261 ctgtccatca gcagcgccac gcagtccggc aacgtgccct ggtacagtga ggcctgctcg
     1321 tccacgctgg ccacaacgta cagcagtgga aaccagaacg agaagcagat cgtgaccact
     1381 gatctgcggc agaagtgtac ggagtctcac acaggcacct ctgcctctgc ccccttggca
     1441 gcgggcatca tcgctctcac cctggaggcc aataagaacc tcacctggcg ggacatgcag
     1501 cacctggtgg tacagacctc aaagccagcc cacctcaatg ctaacgactg ggccaccaat
     1561 ggtgtgggcc gcaaagtgag ccattcgtat ggctacgggt tactggacgc aggtgccatg
     1621 gtggctctgg cccagaactg gacgacggtg accccccagc ggaagtgcat catcgacatc
     1681 ctcactgagc ccaaggacat cgggaagcgg ctggaggtgc ggaagactgt gaccgcctgc
     1741 gtgggggagc ccagccacat cacgcggctg gaacacactc aggcgcggct caccctgtcc
     1801 tacaaccgcc gtggtgacct ggccatccac ctggtcagcc ccatgggcac ccgctccacc
     1861 ctgctggccg ccaggccgca cgactactct gcagacgggt ttaacgactg ggccttcatg
     1921 acgacccatt cctgggacga ggacccctct ggcgagtggg tcctggagat agaaaacacc
     1981 agtgaagcaa ataactatgg gacactgacc aagttcaccc tcgtgctgta cggcacggcc
     2041 cccgaggggc tgcccacacc tcctgagagc atcggctgca agaccctcac gtccagccag
     2101 gcctgtgtgg tgtgcgagga aggcttctcc ctgcaccaga agagctgtgt ccagcgctgc
     2161 cctccaggct tcgctcccca agtcctcgac acgcactaca gcaccgagaa caacgtggag
     2221 atcatccggg ccagcgtctg tgccccctgc cacgcctcgt gtgccacgtg ccaggggcca
     2281 gcccccacag actgcctcag ctgccccagc cacgcctccc tggaccctgt ggaacagaca
     2341 tgctcccggc aaagccagag cagccgtgag tcgccgcagc cgcagcagcc gccacctatg
     2401 gaggtggagg cagagccgcg gctgcgggag gggctgctgc cctcacacct gcccgaggtg
     2461 gtggccggcc tcagctgcgc cttcatcgtg ctggtcttcg tcactgtctt cctggtcctg
     2521 cagctgcgct cgggcttcag cttccgaggg gtgaaggtgt acaccatgga ccgtggcctc
     2581 atctcctaca aggggctgcc ccccgaagcc tggcaggagg agtgcccatc cgactcagaa
     2641 gaggacgagg gccggggcga gaggaccgcc tttatcaaag accagagcgc cctttgacga
     2701 gcgcctactg cccgcccctt cgagcccatc ccctcctggg gcacttttta attcaccaaa
     2761 gtattttttt atcttgggac tgggtttgga ccccagctgg gaggcaagag aggcagagac
     2821 ggcttcccac cctacccttg ggccccccgg ctgcctgagg tgggacccca ggaccagctg
     2881 gggagcaggg gagggcctct gcccaccccc agcacgcctg cgtgtggaga aaggagtgaa
     2941 acctttaggg cagctttcca aggtccaggc cccagccaga gttccctgcg gagtgaagag
     3001 gggcagccct tcccttatgg gattcctgac ccgggctgca gttctcgccc cttccctgtc
     3061 cctctaaagc aataatggtc cccatccagg cagcagggag gctggcctag ggggtatttg
     3121 aaggaggagg ccacctctct aagggctttt gcatccctga ccccgtcccc cacctctggt
     3181 gagcctcggg cggaagcagt aagcgaagga agggaccaag gcaaggcagg cacttccagg
     3241 gtgcacacgt gtgtgtgtcc ctttgcccac ctccactaca gctggctgcc tgctgagcga
     3301 ggctggcccg gccccgtgct ggtgtgctga ccaccctccc ctctctggca ccctctcctc
     3361 ctgccagggc ccaagtccct gttttctgag cccggggctg cctgggctgt tggcactcac
     3421 agtcccagag cccctgggtg ggtggtgggg agggacggtg gcccagccgg cctctcccgc
     3481 ctcccacccg atgctgcttt cccctgtggg gatctcaggg gctgtttgag gatatatttt
     3541 cactttgtga ttatttcact ttagatgctg attttttttt tttttttttg gtatttttaa
     3601 tgggggtagc agctggacca tccaccttcc cacacccact gtccaccctg ctgttccccc
     3661 cggctgccct ggccctgagg tgtgggggtc tgcagcgtgt tgctgaggag tagctgagcc
     3721 ccaggtcctg aagagacagg ccaggccagg cgggccctag gaaaggagga gtacgataga
     3781 aggggcaggc tgtcgtccat ttcagatggg gctcctcgtg ccaagggctc atgggtcagt
     3841 ggttctccaa gtgccagggg tgggcaggca gtggcactga gccccctcca acactgtgcc
     3901 ctggtggaga aagcactgac ctgtcctgcc ccccaaggcc ccctcttctg acgtgccttt
     3961 tgtacccctc ccattaggac aatcagtccc ctcccgtttg ggagccccct tttctttctc
     4021 tcccctagcc cctcctgaca cccagccacc tgcccagggg cacccccgcc tctcccatcc
     4081 cccccaccct tgtggccagc ccagctggtt ttgtaagata ctgggttggt gcacagtgat
     4141 tttttttttt ttcttgtaat ttaaacaggc ccagcattgt tggttctatt taatggacac
     4201 gaggtaatgt tagaggtttt aaagcgatta aacgtgcaga ctatgcaaac cagg
//
LOCUS       XM_032619908            4452 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X6, mRNA.
ACCESSION   XM_032619908
VERSION     XM_032619908.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4452
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4452
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             517..2895
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475799.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    613..837
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    853..1722
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(859..861,1000..1002,1138..1140)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(973..978,1087..1089,1096..1098,1222..1224,
                     1276..1278,1306..1308,1399..1401,1432..1434,1618..1620)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(973..975,1096..1098,1618..1620)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(1417..1419,1507..1509)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1441..1443,1447..1449,1456..1458,1462..1464)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    1966..2226
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    2257..2370
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    2428..>2541
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 cctggtcgcc ggcccggccg aggccgcgcc gccgctcctc cccgcctccg cgcggtgacg
       61 ctgctgccgg gcgcggggac cgcgtcgagc ccaggccccg ccgccgggct ctccgctcgg
      121 ccgaggggcg cccgagccac cgcggcgctc gcctggaaaa gtttccccgc ccgggctccc
      181 taggggctga atgtctggct gtccagccat tgctcagacc agctttccgg aacttggtcg
      241 cccaaggcat catggggctg tggcttccag gcctgtccgg gaaccctgtg gactctgccc
      301 atccagggtg aggaggagct gcattgtgga tgcctcctgc catcagctgt cagagccggc
      361 agccctcatc ctccccgcgc agtcccgccc gtcttggtcc catgcccccg ccagtcagcc
      421 ccgggccaca ggcagtgagc aggcacgcgg gagccgaggc cctgtgacca ggccaaggag
      481 acaggggctc cggggtcccg gccacctgtc ccccccatgg agctgaggcc ctggttgcta
      541 tgggtggtag cagcagcagg agccttggtc ctgctggcgg ccgatgcccg tggccagaag
      601 gtcttcacca atacctgggc cgtgcgcatt cctggaggcc cagccgtggc tgacagtgtg
      661 gcacgcaagc atggcttcct caacctgggc cagatcttcg gcgactatta ccacttctgg
      721 catcgagcgg tgacaaagcg gtccctgtca cctcaccgcc cgcggcacag ccggctgcag
      781 cgggaacctc aagtacagtg gctggagcag caggtggcaa agcgacggac caaacgggac
      841 gtgtaccagg agcccacgga ccccaagttt ccccagcagt ggtacctgtc tggtgtcacc
      901 cagcgggacc tgaacgtgaa ggaggcctgg gcccagggct acacggggcg tggcatcgtg
      961 gtctccattc tggacgatgg catcgagaag aaccacccgg acttggcagg caattatgat
     1021 cctggggcca gcttcgatgt caatgaccag gaccctgacc cccagcctcg gtacacgcag
     1081 atgaatgaca acaggcatgg cacacggtgt gcaggcgagg tggccgcagt ggccaacaac
     1141 ggtgtctgtg gcgtaggcgt ggcctacaat gcccgtattg gaggggtgcg catgctggac
     1201 ggtgaagtga cagatgcggt agaggcacgc tcgctgggcc tgaatcccaa ccacatccac
     1261 atctacagcg ccagttgggg ccccgaggac gacggcaaga ccgtggatgg gccagcccgc
     1321 cttgctgagg aggccttctt ccggggggtc agccagggcc gcggggggct gggctccatc
     1381 tttgtctggg cctctgggaa cgggggccgg gaacatgaca gctgcaactg cgacggctac
     1441 accaacagca tctacacgct gtccatcagc agcgccacgc agtccggcaa cgtgccctgg
     1501 tacagtgagg cctgctcgtc cacgctggcc acaacgtaca gcagtggaaa ccagaacgag
     1561 aagcagatcg tgaccactga tctgcggcag aagtgtacgg agtctcacac aggcacctct
     1621 gcctctgccc ccttggcagc gggcatcatc gctctcaccc tggaggccaa taagaacctc
     1681 acctggcggg acatgcagca cctggtggta cagacctcaa agccagccca cctcaatgct
     1741 aacgactggg ccaccaatgg tgtgggccgc aaagtgagcc attcgtatgg ctacgggtta
     1801 ctggacgcag gtgccatggt ggctctggcc cagaactgga cgacggtgac cccccagcgg
     1861 aagtgcatca tcgacatcct cactgagccc aaggacatcg ggaagcggct ggaggtgcgg
     1921 aagactgtga ccgcctgcgt gggggagccc agccacatca cgcggctgga acacactcag
     1981 gcgcggctca ccctgtccta caaccgccgt ggtgacctgg ccatccacct ggtcagcccc
     2041 atgggcaccc gctccaccct gctggccgcc aggccgcacg actactctgc agacgggttt
     2101 aacgactggg ccttcatgac gacccattcc tgggacgagg acccctctgg cgagtgggtc
     2161 ctggagatag aaaacaccag tgaagcaaat aactatggga cactgaccaa gttcaccctc
     2221 gtgctgtacg gcacggcccc cgaggggctg cccacacctc ctgagagcat cggctgcaag
     2281 accctcacgt ccagccaggc ctgtgtggtg tgcgaggaag gcttctccct gcaccagaag
     2341 agctgtgtcc agcgctgccc tccaggcttc gctccccaag tcctcgacac gcactacagc
     2401 accgagaaca acgtggagat catccgggcc agcgtctgtg ccccctgcca cgcctcgtgt
     2461 gccacgtgcc aggggccagc ccccacagac tgcctcagct gccccagcca cgcctccctg
     2521 gaccctgtgg aacagacatg ctcccggcaa agccagagca gccgtgagtc gccgcagccg
     2581 cagcagccgc cacctatgga ggtggaggca gagccgcggc tgcgggaggg gctgctgccc
     2641 tcacacctgc ccgaggtggt ggccggcctc agctgcgcct tcatcgtgct ggtcttcgtc
     2701 actgtcttcc tggtcctgca gctgcgctcg ggcttcagct tccgaggggt gaaggtgtac
     2761 accatggacc gtggcctcat ctcctacaag gggctgcccc ccgaagcctg gcaggaggag
     2821 tgcccatccg actcagaaga ggacgagggc cggggcgaga ggaccgcctt tatcaaagac
     2881 cagagcgccc tttgacgagc gcctactgcc cgccccttcg agcccatccc ctcctggggc
     2941 actttttaat tcaccaaagt atttttttat cttgggactg ggtttggacc ccagctggga
     3001 ggcaagagag gcagagacgg cttcccaccc tacccttggg ccccccggct gcctgaggtg
     3061 ggaccccagg accagctggg gagcagggga gggcctctgc ccacccccag cacgcctgcg
     3121 tgtggagaaa ggagtgaaac ctttagggca gctttccaag gtccaggccc cagccagagt
     3181 tccctgcgga gtgaagaggg gcagcccttc ccttatggga ttcctgaccc gggctgcagt
     3241 tctcgcccct tccctgtccc tctaaagcaa taatggtccc catccaggca gcagggaggc
     3301 tggcctaggg ggtatttgaa ggaggaggcc acctctctaa gggcttttgc atccctgacc
     3361 ccgtccccca cctctggtga gcctcgggcg gaagcagtaa gcgaaggaag ggaccaaggc
     3421 aaggcaggca cttccagggt gcacacgtgt gtgtgtccct ttgcccacct ccactacagc
     3481 tggctgcctg ctgagcgagg ctggcccggc cccgtgctgg tgtgctgacc accctcccct
     3541 ctctggcacc ctctcctcct gccagggccc aagtccctgt tttctgagcc cggggctgcc
     3601 tgggctgttg gcactcacag tcccagagcc cctgggtggg tggtggggag ggacggtggc
     3661 ccagccggcc tctcccgcct cccacccgat gctgctttcc cctgtgggga tctcaggggc
     3721 tgtttgagga tatattttca ctttgtgatt atttcacttt agatgctgat tttttttttt
     3781 tttttttggt atttttaatg ggggtagcag ctggaccatc caccttccca cacccactgt
     3841 ccaccctgct gttccccccg gctgccctgg ccctgaggtg tgggggtctg cagcgtgttg
     3901 ctgaggagta gctgagcccc aggtcctgaa gagacaggcc aggccaggcg ggccctagga
     3961 aaggaggagt acgatagaag gggcaggctg tcgtccattt cagatggggc tcctcgtgcc
     4021 aagggctcat gggtcagtgg ttctccaagt gccaggggtg ggcaggcagt ggcactgagc
     4081 cccctccaac actgtgccct ggtggagaaa gcactgacct gtcctgcccc ccaaggcccc
     4141 ctcttctgac gtgccttttg tacccctccc attaggacaa tcagtcccct cccgtttggg
     4201 agcccccttt tctttctctc ccctagcccc tcctgacacc cagccacctg cccaggggca
     4261 cccccgcctc tcccatcccc cccacccttg tggccagccc agctggtttt gtaagatact
     4321 gggttggtgc acagtgattt tttttttttt cttgtaattt aaacaggccc agcattgttg
     4381 gttctattta atggacacga ggtaatgtta gaggttttaa agcgattaaa cgtgcagact
     4441 atgcaaacca gg
//
LOCUS       XM_032619916            4283 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X7, mRNA.
ACCESSION   XM_032619916
VERSION     XM_032619916.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4283
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4283
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             348..2726
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475807.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    444..668
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    684..1553
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(690..692,831..833,969..971)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(804..809,918..920,927..929,1053..1055,1107..1109,
                     1137..1139,1230..1232,1263..1265,1449..1451)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(804..806,927..929,1449..1451)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(1248..1250,1338..1340)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1272..1274,1278..1280,1287..1289,1293..1295)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    1797..2057
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    2088..2201
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    2259..>2372
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 cctggtcgcc ggcccggccg aggccgcgcc gccgctcctc cccgcctccg cgcggtgacg
       61 ctgctgccgg gcgcggggac cgcgtcgagc ccaggccccg ccgccgggct ctccgctcgg
      121 ccgaggggcg cccgagccac cgcggcgctc gcctggaaaa gtttccccgc ccgggctccc
      181 taggagccgg cagccctcat cctccccgcg cagtcccgcc cgtcttggtc ccatgccccc
      241 gccagtcagc cccgggccac aggcagtgag caggcacgcg ggagccgagg ccctgtgacc
      301 aggccaagga gacaggggct ccggggtccc ggccacctgt cccccccatg gagctgaggc
      361 cctggttgct atgggtggta gcagcagcag gagccttggt cctgctggcg gccgatgccc
      421 gtggccagaa ggtcttcacc aatacctggg ccgtgcgcat tcctggaggc ccagccgtgg
      481 ctgacagtgt ggcacgcaag catggcttcc tcaacctggg ccagatcttc ggcgactatt
      541 accacttctg gcatcgagcg gtgacaaagc ggtccctgtc acctcaccgc ccgcggcaca
      601 gccggctgca gcgggaacct caagtacagt ggctggagca gcaggtggca aagcgacgga
      661 ccaaacggga cgtgtaccag gagcccacgg accccaagtt tccccagcag tggtacctgt
      721 ctggtgtcac ccagcgggac ctgaacgtga aggaggcctg ggcccagggc tacacggggc
      781 gtggcatcgt ggtctccatt ctggacgatg gcatcgagaa gaaccacccg gacttggcag
      841 gcaattatga tcctggggcc agcttcgatg tcaatgacca ggaccctgac ccccagcctc
      901 ggtacacgca gatgaatgac aacaggcatg gcacacggtg tgcaggcgag gtggccgcag
      961 tggccaacaa cggtgtctgt ggcgtaggcg tggcctacaa tgcccgtatt ggaggggtgc
     1021 gcatgctgga cggtgaagtg acagatgcgg tagaggcacg ctcgctgggc ctgaatccca
     1081 accacatcca catctacagc gccagttggg gccccgagga cgacggcaag accgtggatg
     1141 ggccagcccg ccttgctgag gaggccttct tccggggggt cagccagggc cgcggggggc
     1201 tgggctccat ctttgtctgg gcctctggga acgggggccg ggaacatgac agctgcaact
     1261 gcgacggcta caccaacagc atctacacgc tgtccatcag cagcgccacg cagtccggca
     1321 acgtgccctg gtacagtgag gcctgctcgt ccacgctggc cacaacgtac agcagtggaa
     1381 accagaacga gaagcagatc gtgaccactg atctgcggca gaagtgtacg gagtctcaca
     1441 caggcacctc tgcctctgcc cccttggcag cgggcatcat cgctctcacc ctggaggcca
     1501 ataagaacct cacctggcgg gacatgcagc acctggtggt acagacctca aagccagccc
     1561 acctcaatgc taacgactgg gccaccaatg gtgtgggccg caaagtgagc cattcgtatg
     1621 gctacgggtt actggacgca ggtgccatgg tggctctggc ccagaactgg acgacggtga
     1681 ccccccagcg gaagtgcatc atcgacatcc tcactgagcc caaggacatc gggaagcggc
     1741 tggaggtgcg gaagactgtg accgcctgcg tgggggagcc cagccacatc acgcggctgg
     1801 aacacactca ggcgcggctc accctgtcct acaaccgccg tggtgacctg gccatccacc
     1861 tggtcagccc catgggcacc cgctccaccc tgctggccgc caggccgcac gactactctg
     1921 cagacgggtt taacgactgg gccttcatga cgacccattc ctgggacgag gacccctctg
     1981 gcgagtgggt cctggagata gaaaacacca gtgaagcaaa taactatggg acactgacca
     2041 agttcaccct cgtgctgtac ggcacggccc ccgaggggct gcccacacct cctgagagca
     2101 tcggctgcaa gaccctcacg tccagccagg cctgtgtggt gtgcgaggaa ggcttctccc
     2161 tgcaccagaa gagctgtgtc cagcgctgcc ctccaggctt cgctccccaa gtcctcgaca
     2221 cgcactacag caccgagaac aacgtggaga tcatccgggc cagcgtctgt gccccctgcc
     2281 acgcctcgtg tgccacgtgc caggggccag cccccacaga ctgcctcagc tgccccagcc
     2341 acgcctccct ggaccctgtg gaacagacat gctcccggca aagccagagc agccgtgagt
     2401 cgccgcagcc gcagcagccg ccacctatgg aggtggaggc agagccgcgg ctgcgggagg
     2461 ggctgctgcc ctcacacctg cccgaggtgg tggccggcct cagctgcgcc ttcatcgtgc
     2521 tggtcttcgt cactgtcttc ctggtcctgc agctgcgctc gggcttcagc ttccgagggg
     2581 tgaaggtgta caccatggac cgtggcctca tctcctacaa ggggctgccc cccgaagcct
     2641 ggcaggagga gtgcccatcc gactcagaag aggacgaggg ccggggcgag aggaccgcct
     2701 ttatcaaaga ccagagcgcc ctttgacgag cgcctactgc ccgccccttc gagcccatcc
     2761 cctcctgggg cactttttaa ttcaccaaag tattttttta tcttgggact gggtttggac
     2821 cccagctggg aggcaagaga ggcagagacg gcttcccacc ctacccttgg gccccccggc
     2881 tgcctgaggt gggaccccag gaccagctgg ggagcagggg agggcctctg cccaccccca
     2941 gcacgcctgc gtgtggagaa aggagtgaaa cctttagggc agctttccaa ggtccaggcc
     3001 ccagccagag ttccctgcgg agtgaagagg ggcagccctt cccttatggg attcctgacc
     3061 cgggctgcag ttctcgcccc ttccctgtcc ctctaaagca ataatggtcc ccatccaggc
     3121 agcagggagg ctggcctagg gggtatttga aggaggaggc cacctctcta agggcttttg
     3181 catccctgac cccgtccccc acctctggtg agcctcgggc ggaagcagta agcgaaggaa
     3241 gggaccaagg caaggcaggc acttccaggg tgcacacgtg tgtgtgtccc tttgcccacc
     3301 tccactacag ctggctgcct gctgagcgag gctggcccgg ccccgtgctg gtgtgctgac
     3361 caccctcccc tctctggcac cctctcctcc tgccagggcc caagtccctg ttttctgagc
     3421 ccggggctgc ctgggctgtt ggcactcaca gtcccagagc ccctgggtgg gtggtgggga
     3481 gggacggtgg cccagccggc ctctcccgcc tcccacccga tgctgctttc ccctgtgggg
     3541 atctcagggg ctgtttgagg atatattttc actttgtgat tatttcactt tagatgctga
     3601 tttttttttt ttttttttgg tatttttaat gggggtagca gctggaccat ccaccttccc
     3661 acacccactg tccaccctgc tgttcccccc ggctgccctg gccctgaggt gtgggggtct
     3721 gcagcgtgtt gctgaggagt agctgagccc caggtcctga agagacaggc caggccaggc
     3781 gggccctagg aaaggaggag tacgatagaa ggggcaggct gtcgtccatt tcagatgggg
     3841 ctcctcgtgc caagggctca tgggtcagtg gttctccaag tgccaggggt gggcaggcag
     3901 tggcactgag ccccctccaa cactgtgccc tggtggagaa agcactgacc tgtcctgccc
     3961 cccaaggccc cctcttctga cgtgcctttt gtacccctcc cattaggaca atcagtcccc
     4021 tcccgtttgg gagccccctt ttctttctct cccctagccc ctcctgacac ccagccacct
     4081 gcccaggggc acccccgcct ctcccatccc ccccaccctt gtggccagcc cagctggttt
     4141 tgtaagatac tgggttggtg cacagtgatt tttttttttt tcttgtaatt taaacaggcc
     4201 cagcattgtt ggttctattt aatggacacg aggtaatgtt agaggtttta aagcgattaa
     4261 acgtgcagac tatgcaaacc agg
//
LOCUS       XM_032619925            5823 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X8, mRNA.
ACCESSION   XM_032619925
VERSION     XM_032619925.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5823
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5823
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             1888..4266
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475816.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    1984..2208
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    2224..3093
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(2230..2232,2371..2373,2509..2511)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(2344..2349,2458..2460,2467..2469,2593..2595,
                     2647..2649,2677..2679,2770..2772,2803..2805,2989..2991)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(2344..2346,2467..2469,2989..2991)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(2788..2790,2878..2880)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(2812..2814,2818..2820,2827..2829,2833..2835)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    3337..3597
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    3628..3741
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    3799..>3912
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 cgcgccgccg ccgcggcccg gccgctgccc ccgcccgcgc cggagccgga gccgaggccg
       61 aggccgagcc ctgccctggt cgccggcccg gccgaggccg cgccgccgct cctccccgcc
      121 tccgcgcggt gacgctgctg ccgggcgcgg ggaccgcgtc gagcccaggc cccgccgccg
      181 ggctctccgc tcggccgagg ggcgcccgag ccaccgcggc gctcgcctgg aaaagtttcc
      241 ccgcccgggc tccctagggt aagcggcgag ggcgcggggc ccggtggagg cagcgcgccg
      301 ggagccgggc ccgaggagag ccggccggac tgggccgctc tgccggagga gctggctccg
      361 cggcccgggc gcgcaggcgg ggtagggtcg gggtcgctgg cgcggaggca gcccgggccc
      421 ggctgcccgc ccggctttcg aaactggccc ccgggccggc cccgagggtg aagccgcggg
      481 gagcaggaag ggcgccccgc agcccacctg agagcgtcgg gcccggcttg gctcccagcc
      541 cttgtaggtg ccggtacttt tccgcttggg gccggggcga gccctctgac ctcaggaagc
      601 gccagcgggg cccccgctgg gggcgggatg gcgagagaat tccagaggcg ccgggtgctc
      661 ccgcctccgg gccgtccttc gggggccgca gccgccggct cgcccactcc gcggctgggg
      721 agggcctgcg ctcccgccgg gggaggggag gagcggctgt tcgcgaggcg gaggagatta
      781 ttcaccgccc gggcctcgtc cccgcctgca cacctgagcg gcgagacact taggtgcggg
      841 atccgcgggc gctgggaggc tggttcaggt aggttccggg gctgcctccc gcggaggcct
      901 ggccgagacc cctgctgccc tcgtggggtg gctggattga ggggcggcct gcttgccaga
      961 caggtcttac agcagtcact tgtcaggtca gtacctgctc tccccgccat cctctagacc
     1021 cttgaccctg ggggtgcaga ccctcctcca ccggagggtg tcagaattct ttctgacttg
     1081 ggaagtggga ggggaaccca ggtgatgtgg cctagtgagg gctgggcagc tgctggccag
     1141 gtgtgggcac agcataggag agtagccaag cctgacccgt ctcaaccaca gtggccgaag
     1201 ttttacgatt tcctatattg ggcttccaca taagatttga ttttttaaag attctgtggc
     1261 tttaaaaaaa agtttgaaaa cctctggtct agcagttttt accatctagg aaactgaggc
     1321 ctagagagag gaagtgactt aagatcacac agaaaatgag taaagattgg aattcagaat
     1381 ttcagcacag ccttcagtgc ctgttacagg acctggcttg gtgtctcttt gctggagaga
     1441 cgggaccagg tttcccaggc agccctgtcc acgccagacc cccagtgcct gggaaacagc
     1501 agctggacct ggaggaggtt cagtttgggt gcctcggagt gggtgtctgt gtcaggaggt
     1561 tcctgggact ggagaaaagg gctttgacct agaacacagc cacaaagagc acccacaggt
     1621 ctctctgtgg ccacagcctg gagctgactc ccatgtgaga gggcctcaca ggaggctgga
     1681 aatacagcaa gcctccgggt ttgagccgaa ctgggactca gaggagccgg cagccctcat
     1741 cctccccgcg cagtcccgcc cgtcttggtc ccatgccccc gccagtcagc cccgggccac
     1801 aggcagtgag caggcacgcg ggagccgagg ccctgtgacc aggccaagga gacaggggct
     1861 ccggggtccc ggccacctgt cccccccatg gagctgaggc cctggttgct atgggtggta
     1921 gcagcagcag gagccttggt cctgctggcg gccgatgccc gtggccagaa ggtcttcacc
     1981 aatacctggg ccgtgcgcat tcctggaggc ccagccgtgg ctgacagtgt ggcacgcaag
     2041 catggcttcc tcaacctggg ccagatcttc ggcgactatt accacttctg gcatcgagcg
     2101 gtgacaaagc ggtccctgtc acctcaccgc ccgcggcaca gccggctgca gcgggaacct
     2161 caagtacagt ggctggagca gcaggtggca aagcgacgga ccaaacggga cgtgtaccag
     2221 gagcccacgg accccaagtt tccccagcag tggtacctgt ctggtgtcac ccagcgggac
     2281 ctgaacgtga aggaggcctg ggcccagggc tacacggggc gtggcatcgt ggtctccatt
     2341 ctggacgatg gcatcgagaa gaaccacccg gacttggcag gcaattatga tcctggggcc
     2401 agcttcgatg tcaatgacca ggaccctgac ccccagcctc ggtacacgca gatgaatgac
     2461 aacaggcatg gcacacggtg tgcaggcgag gtggccgcag tggccaacaa cggtgtctgt
     2521 ggcgtaggcg tggcctacaa tgcccgtatt ggaggggtgc gcatgctgga cggtgaagtg
     2581 acagatgcgg tagaggcacg ctcgctgggc ctgaatccca accacatcca catctacagc
     2641 gccagttggg gccccgagga cgacggcaag accgtggatg ggccagcccg ccttgctgag
     2701 gaggccttct tccggggggt cagccagggc cgcggggggc tgggctccat ctttgtctgg
     2761 gcctctggga acgggggccg ggaacatgac agctgcaact gcgacggcta caccaacagc
     2821 atctacacgc tgtccatcag cagcgccacg cagtccggca acgtgccctg gtacagtgag
     2881 gcctgctcgt ccacgctggc cacaacgtac agcagtggaa accagaacga gaagcagatc
     2941 gtgaccactg atctgcggca gaagtgtacg gagtctcaca caggcacctc tgcctctgcc
     3001 cccttggcag cgggcatcat cgctctcacc ctggaggcca ataagaacct cacctggcgg
     3061 gacatgcagc acctggtggt acagacctca aagccagccc acctcaatgc taacgactgg
     3121 gccaccaatg gtgtgggccg caaagtgagc cattcgtatg gctacgggtt actggacgca
     3181 ggtgccatgg tggctctggc ccagaactgg acgacggtga ccccccagcg gaagtgcatc
     3241 atcgacatcc tcactgagcc caaggacatc gggaagcggc tggaggtgcg gaagactgtg
     3301 accgcctgcg tgggggagcc cagccacatc acgcggctgg aacacactca ggcgcggctc
     3361 accctgtcct acaaccgccg tggtgacctg gccatccacc tggtcagccc catgggcacc
     3421 cgctccaccc tgctggccgc caggccgcac gactactctg cagacgggtt taacgactgg
     3481 gccttcatga cgacccattc ctgggacgag gacccctctg gcgagtgggt cctggagata
     3541 gaaaacacca gtgaagcaaa taactatggg acactgacca agttcaccct cgtgctgtac
     3601 ggcacggccc ccgaggggct gcccacacct cctgagagca tcggctgcaa gaccctcacg
     3661 tccagccagg cctgtgtggt gtgcgaggaa ggcttctccc tgcaccagaa gagctgtgtc
     3721 cagcgctgcc ctccaggctt cgctccccaa gtcctcgaca cgcactacag caccgagaac
     3781 aacgtggaga tcatccgggc cagcgtctgt gccccctgcc acgcctcgtg tgccacgtgc
     3841 caggggccag cccccacaga ctgcctcagc tgccccagcc acgcctccct ggaccctgtg
     3901 gaacagacat gctcccggca aagccagagc agccgtgagt cgccgcagcc gcagcagccg
     3961 ccacctatgg aggtggaggc agagccgcgg ctgcgggagg ggctgctgcc ctcacacctg
     4021 cccgaggtgg tggccggcct cagctgcgcc ttcatcgtgc tggtcttcgt cactgtcttc
     4081 ctggtcctgc agctgcgctc gggcttcagc ttccgagggg tgaaggtgta caccatggac
     4141 cgtggcctca tctcctacaa ggggctgccc cccgaagcct ggcaggagga gtgcccatcc
     4201 gactcagaag aggacgaggg ccggggcgag aggaccgcct ttatcaaaga ccagagcgcc
     4261 ctttgacgag cgcctactgc ccgccccttc gagcccatcc cctcctgggg cactttttaa
     4321 ttcaccaaag tattttttta tcttgggact gggtttggac cccagctggg aggcaagaga
     4381 ggcagagacg gcttcccacc ctacccttgg gccccccggc tgcctgaggt gggaccccag
     4441 gaccagctgg ggagcagggg agggcctctg cccaccccca gcacgcctgc gtgtggagaa
     4501 aggagtgaaa cctttagggc agctttccaa ggtccaggcc ccagccagag ttccctgcgg
     4561 agtgaagagg ggcagccctt cccttatggg attcctgacc cgggctgcag ttctcgcccc
     4621 ttccctgtcc ctctaaagca ataatggtcc ccatccaggc agcagggagg ctggcctagg
     4681 gggtatttga aggaggaggc cacctctcta agggcttttg catccctgac cccgtccccc
     4741 acctctggtg agcctcgggc ggaagcagta agcgaaggaa gggaccaagg caaggcaggc
     4801 acttccaggg tgcacacgtg tgtgtgtccc tttgcccacc tccactacag ctggctgcct
     4861 gctgagcgag gctggcccgg ccccgtgctg gtgtgctgac caccctcccc tctctggcac
     4921 cctctcctcc tgccagggcc caagtccctg ttttctgagc ccggggctgc ctgggctgtt
     4981 ggcactcaca gtcccagagc ccctgggtgg gtggtgggga gggacggtgg cccagccggc
     5041 ctctcccgcc tcccacccga tgctgctttc ccctgtgggg atctcagggg ctgtttgagg
     5101 atatattttc actttgtgat tatttcactt tagatgctga tttttttttt ttttttttgg
     5161 tatttttaat gggggtagca gctggaccat ccaccttccc acacccactg tccaccctgc
     5221 tgttcccccc ggctgccctg gccctgaggt gtgggggtct gcagcgtgtt gctgaggagt
     5281 agctgagccc caggtcctga agagacaggc caggccaggc gggccctagg aaaggaggag
     5341 tacgatagaa ggggcaggct gtcgtccatt tcagatgggg ctcctcgtgc caagggctca
     5401 tgggtcagtg gttctccaag tgccaggggt gggcaggcag tggcactgag ccccctccaa
     5461 cactgtgccc tggtggagaa agcactgacc tgtcctgccc cccaaggccc cctcttctga
     5521 cgtgcctttt gtacccctcc cattaggaca atcagtcccc tcccgtttgg gagccccctt
     5581 ttctttctct cccctagccc ctcctgacac ccagccacct gcccaggggc acccccgcct
     5641 ctcccatccc ccccaccctt gtggccagcc cagctggttt tgtaagatac tgggttggtg
     5701 cacagtgatt tttttttttt tcttgtaatt taaacaggcc cagcattgtt ggttctattt
     5761 aatggacacg aggtaatgtt agaggtttta aagcgattaa acgtgcagac tatgcaaacc
     5821 agg
//
LOCUS       XM_032619935            4242 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus furin, paired basic amino acid cleaving
            enzyme (FURIN), transcript variant X9, mRNA.
ACCESSION   XM_032619935
VERSION     XM_032619935.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4242
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4242
                     /gene="FURIN"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 12 long SRA reads, 47
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747533"
     CDS             307..2685
                     /gene="FURIN"
                     /codon_start=1
                     /product="furin"
                     /protein_id="XP_032475826.1"
                     /db_xref="GeneID:116747533"
                     /translation="MELRPWLLWVVAAAGALVLLAADARGQKVFTNTWAVRIPGGPAV
                     ADSVARKHGFLNLGQIFGDYYHFWHRAVTKRSLSPHRPRHSRLQREPQVQWLEQQVAK
                     RRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKEAWAQGYTGRGIVVSILDDGIEKNH
                     PDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYN
                     ARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR
                     GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQSGNVPWYSEACS
                     STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRD
                     MQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVTPQRKC
                     IIDILTEPKDIGKRLEVRKTVTACVGEPSHITRLEHTQARLTLSYNRRGDLAIHLVSP
                     MGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKF
                     TLVLYGTAPEGLPTPPESIGCKTLTSSQACVVCEEGFSLHQKSCVQRCPPGFAPQVLD
                     THYSTENNVEIIRASVCAPCHASCATCQGPAPTDCLSCPSHASLDPVEQTCSRQSQSS
                     RESPQPQQPPPMEVEAEPRLREGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGF
                     SFRGVKVYTMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL"
     misc_feature    403..627
                     /gene="FURIN"
                     /note="Peptidase S8 pro-domain; Region: S8_pro-domain;
                     pfam16470"
                     /db_xref="CDD:465126"
     misc_feature    643..1512
                     /gene="FURIN"
                     /note="Peptidase S8 family domain in Protein convertases;
                     Region:
                     Peptidases_S8_Protein_convertases_Kexins_Furin-lik;
                     cd04059"
                     /db_xref="CDD:173789"
     misc_feature    order(649..651,790..792,928..930)
                     /gene="FURIN"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(763..768,877..879,886..888,1012..1014,1066..1068,
                     1096..1098,1189..1191,1222..1224,1408..1410)
                     /gene="FURIN"
                     /note="active site"
                     /db_xref="CDD:173789"
     misc_feature    order(763..765,886..888,1408..1410)
                     /gene="FURIN"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173789"
     misc_feature    order(1207..1209,1297..1299)
                     /gene="FURIN"
                     /note="calcium binding site 2 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    order(1231..1233,1237..1239,1246..1248,1252..1254)
                     /gene="FURIN"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:173789"
     misc_feature    1756..2016
                     /gene="FURIN"
                     /note="Proprotein convertase P-domain; Region:
                     P_proprotein; pfam01483"
                     /db_xref="CDD:460225"
     misc_feature    2047..2160
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
     misc_feature    2218..>2331
                     /gene="FURIN"
                     /note="Furin-like repeats; Region: FU; smart00261"
                     /db_xref="CDD:214589"
ORIGIN      
        1 aggaattgtg tgttgagtct ctccagcctg cagggtggga ctgcagcagg agcaggcagg
       61 gaggctgact gtggctgagg gcaatctctg gaaaaggagt gttcccagtg gtgagcccgc
      121 ctgtccagct ctccggggcc cggagccggc agccctcatc ctccccgcgc agtcccgccc
      181 gtcttggtcc catgcccccg ccagtcagcc ccgggccaca ggcagtgagc aggcacgcgg
      241 gagccgaggc cctgtgacca ggccaaggag acaggggctc cggggtcccg gccacctgtc
      301 ccccccatgg agctgaggcc ctggttgcta tgggtggtag cagcagcagg agccttggtc
      361 ctgctggcgg ccgatgcccg tggccagaag gtcttcacca atacctgggc cgtgcgcatt
      421 cctggaggcc cagccgtggc tgacagtgtg gcacgcaagc atggcttcct caacctgggc
      481 cagatcttcg gcgactatta ccacttctgg catcgagcgg tgacaaagcg gtccctgtca
      541 cctcaccgcc cgcggcacag ccggctgcag cgggaacctc aagtacagtg gctggagcag
      601 caggtggcaa agcgacggac caaacgggac gtgtaccagg agcccacgga ccccaagttt
      661 ccccagcagt ggtacctgtc tggtgtcacc cagcgggacc tgaacgtgaa ggaggcctgg
      721 gcccagggct acacggggcg tggcatcgtg gtctccattc tggacgatgg catcgagaag
      781 aaccacccgg acttggcagg caattatgat cctggggcca gcttcgatgt caatgaccag
      841 gaccctgacc cccagcctcg gtacacgcag atgaatgaca acaggcatgg cacacggtgt
      901 gcaggcgagg tggccgcagt ggccaacaac ggtgtctgtg gcgtaggcgt ggcctacaat
      961 gcccgtattg gaggggtgcg catgctggac ggtgaagtga cagatgcggt agaggcacgc
     1021 tcgctgggcc tgaatcccaa ccacatccac atctacagcg ccagttgggg ccccgaggac
     1081 gacggcaaga ccgtggatgg gccagcccgc cttgctgagg aggccttctt ccggggggtc
     1141 agccagggcc gcggggggct gggctccatc tttgtctggg cctctgggaa cgggggccgg
     1201 gaacatgaca gctgcaactg cgacggctac accaacagca tctacacgct gtccatcagc
     1261 agcgccacgc agtccggcaa cgtgccctgg tacagtgagg cctgctcgtc cacgctggcc
     1321 acaacgtaca gcagtggaaa ccagaacgag aagcagatcg tgaccactga tctgcggcag
     1381 aagtgtacgg agtctcacac aggcacctct gcctctgccc ccttggcagc gggcatcatc
     1441 gctctcaccc tggaggccaa taagaacctc acctggcggg acatgcagca cctggtggta
     1501 cagacctcaa agccagccca cctcaatgct aacgactggg ccaccaatgg tgtgggccgc
     1561 aaagtgagcc attcgtatgg ctacgggtta ctggacgcag gtgccatggt ggctctggcc
     1621 cagaactgga cgacggtgac cccccagcgg aagtgcatca tcgacatcct cactgagccc
     1681 aaggacatcg ggaagcggct ggaggtgcgg aagactgtga ccgcctgcgt gggggagccc
     1741 agccacatca cgcggctgga acacactcag gcgcggctca ccctgtccta caaccgccgt
     1801 ggtgacctgg ccatccacct ggtcagcccc atgggcaccc gctccaccct gctggccgcc
     1861 aggccgcacg actactctgc agacgggttt aacgactggg ccttcatgac gacccattcc
     1921 tgggacgagg acccctctgg cgagtgggtc ctggagatag aaaacaccag tgaagcaaat
     1981 aactatggga cactgaccaa gttcaccctc gtgctgtacg gcacggcccc cgaggggctg
     2041 cccacacctc ctgagagcat cggctgcaag accctcacgt ccagccaggc ctgtgtggtg
     2101 tgcgaggaag gcttctccct gcaccagaag agctgtgtcc agcgctgccc tccaggcttc
     2161 gctccccaag tcctcgacac gcactacagc accgagaaca acgtggagat catccgggcc
     2221 agcgtctgtg ccccctgcca cgcctcgtgt gccacgtgcc aggggccagc ccccacagac
     2281 tgcctcagct gccccagcca cgcctccctg gaccctgtgg aacagacatg ctcccggcaa
     2341 agccagagca gccgtgagtc gccgcagccg cagcagccgc cacctatgga ggtggaggca
     2401 gagccgcggc tgcgggaggg gctgctgccc tcacacctgc ccgaggtggt ggccggcctc
     2461 agctgcgcct tcatcgtgct ggtcttcgtc actgtcttcc tggtcctgca gctgcgctcg
     2521 ggcttcagct tccgaggggt gaaggtgtac accatggacc gtggcctcat ctcctacaag
     2581 gggctgcccc ccgaagcctg gcaggaggag tgcccatccg actcagaaga ggacgagggc
     2641 cggggcgaga ggaccgcctt tatcaaagac cagagcgccc tttgacgagc gcctactgcc
     2701 cgccccttcg agcccatccc ctcctggggc actttttaat tcaccaaagt atttttttat
     2761 cttgggactg ggtttggacc ccagctggga ggcaagagag gcagagacgg cttcccaccc
     2821 tacccttggg ccccccggct gcctgaggtg ggaccccagg accagctggg gagcagggga
     2881 gggcctctgc ccacccccag cacgcctgcg tgtggagaaa ggagtgaaac ctttagggca
     2941 gctttccaag gtccaggccc cagccagagt tccctgcgga gtgaagaggg gcagcccttc
     3001 ccttatggga ttcctgaccc gggctgcagt tctcgcccct tccctgtccc tctaaagcaa
     3061 taatggtccc catccaggca gcagggaggc tggcctaggg ggtatttgaa ggaggaggcc
     3121 acctctctaa gggcttttgc atccctgacc ccgtccccca cctctggtga gcctcgggcg
     3181 gaagcagtaa gcgaaggaag ggaccaaggc aaggcaggca cttccagggt gcacacgtgt
     3241 gtgtgtccct ttgcccacct ccactacagc tggctgcctg ctgagcgagg ctggcccggc
     3301 cccgtgctgg tgtgctgacc accctcccct ctctggcacc ctctcctcct gccagggccc
     3361 aagtccctgt tttctgagcc cggggctgcc tgggctgttg gcactcacag tcccagagcc
     3421 cctgggtggg tggtggggag ggacggtggc ccagccggcc tctcccgcct cccacccgat
     3481 gctgctttcc cctgtgggga tctcaggggc tgtttgagga tatattttca ctttgtgatt
     3541 atttcacttt agatgctgat tttttttttt tttttttggt atttttaatg ggggtagcag
     3601 ctggaccatc caccttccca cacccactgt ccaccctgct gttccccccg gctgccctgg
     3661 ccctgaggtg tgggggtctg cagcgtgttg ctgaggagta gctgagcccc aggtcctgaa
     3721 gagacaggcc aggccaggcg ggccctagga aaggaggagt acgatagaag gggcaggctg
     3781 tcgtccattt cagatggggc tcctcgtgcc aagggctcat gggtcagtgg ttctccaagt
     3841 gccaggggtg ggcaggcagt ggcactgagc cccctccaac actgtgccct ggtggagaaa
     3901 gcactgacct gtcctgcccc ccaaggcccc ctcttctgac gtgccttttg tacccctccc
     3961 attaggacaa tcagtcccct cccgtttggg agcccccttt tctttctctc ccctagcccc
     4021 tcctgacacc cagccacctg cccaggggca cccccgcctc tcccatcccc cccacccttg
     4081 tggccagccc agctggtttt gtaagatact gggttggtgc acagtgattt tttttttttt
     4141 cttgtaattt aaacaggccc agcattgttg gttctattta atggacacga ggtaatgtta
     4201 gaggttttaa agcgattaaa cgtgcagact atgcaaacca gg
//
LOCUS       XM_032619945            1151 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus HD domain containing 3 (HDDC3), mRNA.
ACCESSION   XM_032619945
VERSION     XM_032619945.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1151
                     /gene="HDDC3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 1 long SRA read, 7
                     Proteins, and 84% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747566"
     CDS             43..582
                     /gene="HDDC3"
                     /codon_start=1
                     /product="guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase MESH1"
                     /protein_id="XP_032475836.1"
                     /db_xref="GeneID:116747566"
                     /translation="MGSEAAQLLEAADFAARKHQWQRRKDPEGTPYINHPIGVARILT
                     HEAGISDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKR
                     LQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGT
                     NQQLEDALKQLFKERGLTL"
     misc_feature    52..>450
                     /gene="HDDC3"
                     /note="(p)ppGpp synthase/hydrolase, HD superfamily [Signal
                     transduction mechanisms, Transcription]; Region: SpoT;
                     COG0317"
                     /db_xref="CDD:440086"
ORIGIN      
        1 ccccgggatc ctgggaccga ggtcgcccgc gccacccgcg cgatgggctc cgaggcggcc
       61 cagctgttgg aggcggctga cttcgcggct cgcaagcacc aatggcagcg gcggaaggac
      121 cccgaaggga ccccctacat caatcaccct atcggtgtgg ctcgtatcct gacccacgag
      181 gcaggaatct ctgacattgt ggtgttacag gcagccctgc tccatgacac ggtggaggac
      241 acagacacca ccctggatga ggtggagctg cacttcgggg cacaagtgcg gcgtctggtg
      301 gaggaggtaa cagatgacaa gactctgccc aagctggaga gaaagcggct gcaggtggag
      361 caggcacccc acagcagccc cggggctaaa ctggtgaagc tggcagacaa actgtacaat
      421 ctgagggacc tgaatcgctg caccccagag ggatggtccg aacaccgagt ccaggaatac
      481 ttcgagtggg cagcacaggt ggtgaagggg cttcagggga caaaccaaca gctggaagac
      541 gccctaaagc agctgtttaa ggagcggggg ctgacactct gagcagtatt tggagccatc
      601 cagtggcaca gactccatcc ttgcccaggc cagagaagat tcatacttca gcctttcggt
      661 gcctcccgag cttcctccct ggttcactca gcccaggtat tagagaccaa atacacgtgt
      721 cctttctcac tctgaagatc tgccaactaa gctgagcccc agattgtggg atgatgcgcc
      781 ccacccattt ctaatgcatt cactgccctt ctccaggcct tgggtctgat tgcatggtgg
      841 gatctctggc ccctcaggga cttgggctta tatataaacg ctagttcaaa agtcattatg
      901 caaaataaaa catttggata aaggtttgag ttgctgctgc tccttctcca gcctccccat
      961 tggggaaccg atggggggag gggggatacc tgcccttcag tagggcaggg ttccaactgt
     1021 gtgcccctgg gacagatccc tcaggttgag ggcctcaacc cctcggagac tggcttcctt
     1081 atcagtaaga taggttgtgt aattatcagg gctggattat gtgacgtgcc tgacacacag
     1141 gtattcaaaa a
//
LOCUS       XR_004348074            7288 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747574
            (LOC116747574), transcript variant X1, ncRNA.
ACCESSION   XR_004348074
VERSION     XR_004348074.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7288
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7288
                     /gene="LOC116747574"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747574"
     ncRNA           1..7288
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747574"
                     /product="uncharacterized LOC116747574, transcript variant
                     X1"
                     /db_xref="GeneID:116747574"
ORIGIN      
        1 cgcaccgcaa caaaagagta gcccccactt gctgcaacta gagaaagccc gcacacagca
       61 acaaagaccc agtgcagcca aaaataatta attaaaaaaa aaaaagttgg gttggagcag
      121 tgtctgttca atttctcagt aaccaggagc agccacagaa aatgcaagca gcctccttca
      181 gttcagcctc cagctcccag agaatgcaac cgtatccata cagcgccatc ttaggaggac
      241 agaagcacac ggactttccc tgaaccaaaa ctgggacctc tggcagctga agacagagat
      301 ggtcatagcg aagccaatac aggctgggcg ctggtagggg tcctccatga gcgccgaaat
      361 caccaccacc tgggaggagg ggtggggaca aatccacgaa ggagctccag cctaggaccc
      421 ttcactggcc caccctcccc aggtacagac cggctttcct cagccagacc catgttccat
      481 gttggcaaga gaagaaggaa gaaggaaacc gaatcccata gagggcaggt gactggacat
      541 ccagacccgg tgaccttcac tgctctcggg acaggtctga aaccccagcc tggaaggagg
      601 cgtgtttgag aaacgagacc tgcggccaga gtccctctca cggctagcac cctggagctt
      661 cctccccagc aaggggcccc caagcctctc gtgacctggg gagcagggat ccctgctaac
      721 ctcaagacgg aagcatcaac ctctgcggtg gctgtggttt gacagttact gcgagagcag
      781 gcctcccacg ccagccccac aagcctacca cgtgcaggcc acacgtgccc caccacgggg
      841 gaccgccatc cacttgtcac cgcctggtcc cggttcccag cccagcggtc ctgcttcctt
      901 cgcactcgct gggtgacctt tgcaagctct gtggcctttc tgagcctcaa cttctcatct
      961 gcacggtaaa cgtagccgct ggccctgccg cccgagctgg ttgccagcac ctctggtcag
     1021 atgtcccaca aatgtttgct gggccaaaca cagagaccca ggcatggccc tggcactcgg
     1081 cgaggtcaca gtcagggagg gaaacagcga tcgctcaccc cgggggaagg agaggagaag
     1141 cagcattggg gtgtgggggt gctgcgggag cccccagggg agacctaatc cagtccagag
     1201 ggcacaggaa atgaagtttg agccttggag aatgagtagg aattcagaac acgagaagga
     1261 caccccaggg aaccgcaggg gtaaaggctg gaggtgtgat ggagcttggc ctgagagggg
     1321 acctccccag ggttaaggac gggctgcggg aggtggaaaa gccatcccag atggtcctgg
     1381 ctgaggagtg ggacctgtcc ccagggaagg ctctgaagcc agagagacgt gatccaattt
     1441 gccttcgaaa aattactctg accccagagt cagaaaagga ttggagtgag tgaggccgga
     1501 cgccagcaga caggcaggag gctcttgctc atccagcaag agaagtagca gctctcaggg
     1561 tagcaaggtg acaggagtcg acagatccca ctggccaagt aggggacatg gggcagggac
     1621 aggggctgtt gacatgcttt gaagacatcc ccgagagata gcgatcccac atcaggcaga
     1681 ccgacagtcc tggccctttc caggtaggag gacgctttgt tgccagaggg gtcaatttgg
     1741 gagcccctgg tccaggcccc agtgcagccc ccctggggcc caggatctct tgcgatgtat
     1801 ggggtatgca tgcgtgtgcg catgagggtt ctgtccagcc cacgttgcct cctccgagct
     1861 tggcaagtaa atctgcaaag accacaccaa caccccacaa aaaaatgcca actctgtgct
     1921 aatttatttt ttatatttaa gagcatgtga tgaatgctct gcttattgac ctagaaagtc
     1981 atccacagca tgtttttgag aagccgaaca gagtcctacc cctttgctgt aaatccatgc
     2041 caccctgctg cccagcctgg gaccccaggt cccttgtggg ctgcaggaaa ggccatgcca
     2101 taaggcacag cactcggcat tgtatgtctc ttaaatgaca gctcagctca ttttttttaa
     2161 aaggctacag aacaacatgg ctagtaaaga ttttgtcact ttacctgtgt gtgtgtgtgt
     2221 gtgtgtgttt agatagagag ggttgctcac caaaatatta acagtagtag aattgagatg
     2281 atttttactt ttctgaattg cttgactttt tacaaaaaac tcttatcatt tttataatca
     2341 gaataaagca agggagagcc actcggccac cttggggttt agctttgctc cagaagggct
     2401 gtggggtcag agcccccagt ggactaggaa taggctgtgg gcctggagca agcaccccct
     2461 cccagggcca gcccagggcc aggaccaaac gaggccagca ggcgtcagtg gagttgaact
     2521 tgcacagggt gctgaggctg gagtggccct gtggcctcta ggctggggac cccagggtct
     2581 ggccatcgcc actggggcca ccctgcccat tcctgagcag aaggcaacac ttccccacct
     2641 ggccaccctt ctcacttcca ggggacgagt gccctgtgat gggtcacctg cctaggtgcc
     2701 aatggggagc acagcaggag ctccagctca aggagagggt gctgcacggg ggaaaggaga
     2761 aggaggcccc aggtggcctg caaggacccc caccctacaa gtcctgccac tccctccaca
     2821 gtccttagct gaggtctgca ctttgcccca gacctgggtt ctggctggaa ggacctagca
     2881 cacagcaggc gcctaataac gtgttggatg aatgggtgaa ggggccgcta tgaaggcacc
     2941 tgcctagacg gccctcccca tgagaggatg agataggagg ctggggacgg gggcctgggg
     3001 cccactggat cttaaaatcc cgctgcccac ttggtactgc caggcctgtg gggaggctcc
     3061 ccccttactg cttctgttgg cttcaccaag acaagtgaaa gttgccttcc agttggcctc
     3121 agtattcact tagatttcct tttgtatgtg tgcattgatg cttttgatta ttagtgtctt
     3181 gctcattctc agaaagctgg ccgatttccc catttagtga ttttctgaag tccactcacg
     3241 tgtggggaag accagaatgc atggaggact tggaattcaa actaatcatc gctacctgtg
     3301 cagagcttca tcccagctga gaaggcagaa gcctagattt ctgggaggag ggccacgact
     3361 ttcttcagat ggtcaaagag gccagcaccc ctaaaaagtt aagagaccct gcctcagaga
     3421 gactgaagaa ggcctcagca ggctccctgg acagtacagc tcctcccagg agcacacagg
     3481 ggctccctga aaccaagacc caggactgag ctagctctgc acctccttac ctgagagcca
     3541 agccttctcc aaagtgagga gaggactcga cactacaaaa tggggagaac aaattaggaa
     3601 ttgtgaacac caggcaaaaa agcctgatga cggttcgcca taatgaccag ctgcctgcaa
     3661 tctggtgggg gagacaagcc ttggggaaga ggaagggagc tgccccatca cagaccaagc
     3721 agatggtgtg ctcggcaggg tggccgggac agctggagga tcgggcatgg agaggtgtac
     3781 agagtccatg gtgcagctca gactaaaaca gttgaaagag ctgcagaaca gggtttttag
     3841 ggaggcagca tgaggaccca gagtctctgc agatcccgac ctgggcacct aaatcctggg
     3901 aagagctgaa gaggggagtt ggtttccagg atctacagcg cgtctcggct ggaagaacca
     3961 ttgagcttgt ctcctggccc ctcggccaga gtttcctgtc cctgtcctgg gatcctaagc
     4021 ctgtgagaca agatgcccat tctagctggc cctggaccca ggcagctgag ggcccggccc
     4081 agccttggaa acagtggcat gaactcttcc cctcgtctgc cgtgggcgca cacagagcgt
     4141 gtgacaggca aggccgcagc ctgagcccct gctcctccct gcccacggct cccccacctt
     4201 cctgaaccca cctggcctct gatctgcacg cccacagttc ccactgggca gaacttgaaa
     4261 gtcacattcc gctctgtcgg acacctactc tgtgtaccag gtgctcacct cacctgcgag
     4321 ggcaagctca ttaaacagag tggccatgcc gattgtctgc tccctgaccg ctgatgagga
     4381 aagactgctt caatggcggt gtcagaagat gcaatggatc ccactgcaga agtgcattca
     4441 actcccctgc agacacacta atcaggaggt gacacagagc tgcgcaatcc ccagtttcca
     4501 tacacatcga tgcctggcaa ctagcatgtt ttcgttttac tccagctgcc tccacccttc
     4561 gtaagtggag gctgaaaaac cagcccattt cggcaactcc tgaccgtctg ctctggtgag
     4621 gatctgggtc atcccacccg ctgctcactg ccgggtgctg agggcaagcc tccgggcctt
     4681 tgcttgtgtg tccctctgcc tggggagcct cctgctactg tccttttaga aagaggtaga
     4741 atcgtgactg tcacacatat ataaaaatga acaggtgtta aagagtgtat tatgggcttc
     4801 catgatggcg cagtggttga gagtccatct gccgatgcag gggacacggg ttcgtgccct
     4861 ggtccaggaa gatcccacat gccgcagagc ggctgggccc gtgagccatg gctgctgagc
     4921 ctgcgcgtcc ggagcctgtg ctccgcaacg ggagaggcca caacaatgag aggcccacgt
     4981 accacaaaaa aaaaagagtg tattatactc ctaaatcaat aagagaggta ttataatcag
     5041 ttcaaaagag aatgtgaaga acagacacat ttattgatca ggactattga aatgaatgtg
     5101 gacacagagg caatactgag gaggggaagt catctgttct acaggttggt tcagaatcta
     5161 cagcgtaaac aggaattagt ttgaatcact atcagttacc tgcaatttgc agagttgtaa
     5221 aatagccttc atagactgga atccgataat cccaggaatg tcctgcaagt tgagatactg
     5281 cagagctttt ccacagattg tacaaagact cgccttcagc cttgaccacc caacgtcctt
     5341 cacctgacct gcttgaggcc acgcctcctc aaggatgccc tccctggctc caggcggggt
     5401 aggtgccatc cactcagccc cccagtccct ccaacttctg atcacactgt ctcctccgtc
     5461 agactatgag attcttaaaa aagaagttgc atcttcttgg gacttccctg gcagtccagt
     5521 ggttaagact ctgtgcttcc actgaagggg acatgggttc agtccctggt tgggaaacta
     5581 agatcctgca tgcctcgcag tgcagccgaa aataaataaa taatagaagt tgcatcttct
     5641 ctacctgtca ttgtgcctgt gagaactcaa gagacatttg ttgaatgaat gaatgagaga
     5701 acaaaggaac aatacagggt ccttaaacca gggtggtcca cagggtgccc ccataagaca
     5761 gtaaaagacc tgtgacgcag cagttgaagg tcagcagtgc ctcatgaaaa tgtgtatgtc
     5821 tccagcttca tcttattaag ggcatctcag aaataaggct ctgagagcag acaagcttgg
     5881 aaatgctgag ttaaacataa acagcttctt tgctttttcc cttttcatca cagcacatct
     5941 gagagccttt gatatatcag agtgacctat gaatctctca gaaggagaat gcaatgttcc
     6001 agcattgtac atgcttatcg gatggtgaag caaagttttt aaatggagca aaggcaaagg
     6061 ttctggagaa ttcacattga gaaacaccaa tttaatccaa ctgacttgat gtatttaata
     6121 atacataaat tattatcccc tgggtcagaa ttctggctcc agcgttagtg ttcctgtggc
     6181 cttggacaag ttaatgtctc tgcacctcag tgttttcagc tataaaatgg gactaaactt
     6241 acttcagaga gttgctgggg gggatcaagt cagttactgt gaggaaaaca cttagcatag
     6301 agcctggtac agggtgtact caataaatgt gaaccatatc attactgttt ataaaaacat
     6361 gaagggccat ttattgactg tgcctttgca tcatctcact tgatcctcac aacaagcctg
     6421 aggccagatg aggaagatga ggcagatgag gacagaacat ttaggaggtg aagtcactgg
     6481 cccaaggcct tgcagccggc aagcatccag cattcttgga ccaggcgcga ggccctaaga
     6541 acaagcttag ccaagggctt ggcgtgaagt agttgcttaa gaaagactgg tttctcctct
     6601 cccacccttg tccctccttc ccttacagcc aagagtcatg ccgggcccca gtgtgaaggt
     6661 cacccctggc cagggttgtg gtgggatgga cagtgctcaa gccaagggct cccgggtgca
     6721 cgggcagcga aggacagagg ctgagcctgg ccttcctccc cacccccagc tgagacactc
     6781 cctgcccttt ctcttcctca tctttccccc caccccggcc caacacgccc ccatttttat
     6841 ctggcgactt gagaacccag gggtccctcc ctgctcttca gccatcctgg tgtcagggct
     6901 tcactctcaa cacacacaag aggcttaaaa tcgttcttga ttttaagaac gaagcctgca
     6961 ccctgggcct cgagctggcc ggctggccag gccacgtggg gctgcccaca ggctaaacgc
     7021 agacctacac agagccccac cccacccaaa acactgcccc gactgaaggc ttgctcagaa
     7081 aaatgactca gcttgagtgc tcagacgcaa ttttccacgt tttatggact aaaggtgttt
     7141 tcataatagc cggggatgat gagccagaag caggctgtaa acagagcaaa aaaacccgcc
     7201 ctggtctgag gccccacaca caggcagggc ctctgaggct ataagcttct ccacagtggt
     7261 ggcagggcct ccttcatgcc tatgtgcc
//
LOCUS       XR_004348076            4775 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747574
            (LOC116747574), transcript variant X2, ncRNA.
ACCESSION   XR_004348076
VERSION     XR_004348076.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4775
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4775
                     /gene="LOC116747574"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747574"
     ncRNA           1..4775
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747574"
                     /product="uncharacterized LOC116747574, transcript variant
                     X2"
                     /db_xref="GeneID:116747574"
ORIGIN      
        1 cgcaccgcaa caaaagagta gcccccactt gctgcaacta gagaaagccc gcacacagca
       61 acaaagaccc agtgcagcca aaaataatta attaaaaaaa aaaaagttgg gttggagcag
      121 tgtctgttca atttctcagt aaccaggagc agccacagaa aatgcaagca gcctccttca
      181 gttcagcctc cagctcccag agaatgcaac cgtatccata cagcgccatc ttaggaggac
      241 agaagcacac ggactttccc tgaaccaaaa ctgggacctc tggcagctga agacagagat
      301 ggtcatagcg aagccaatac aggctgggcg ctggtagggg tcctccatga gcgccgaaat
      361 caccaccacc tgggaggagg ggtggggaca aatccacgaa ggagctccag cctaggaccc
      421 ttcactggcc caccctcccc aggtacagac cggctttcct cagccagacc catgttccat
      481 gttggcaaga gaagaaggaa gaaggaaacc gaatcccata gagggcaggt gactggacat
      541 ccagacccgg tgaccttcac tgctctcggg acaggtctga aaccccagcc tggaaggagg
      601 cgtgtttgag aaacgagacc tgcggccaga gtccctctca cggctagcac cctggagctt
      661 cctccccagc aaggggcccc caagcctctc gtgacctggg gagcagggat ccctgctaac
      721 ctcaagacgg aagcatcaac ctctgcggtg gctgtggttt gacagttact gcgagagcag
      781 gcctcccacg ccagccccac aagcctacca cgtgcaggcc acacgtgccc caccacgggg
      841 gaccgccatc cacttgtcac cgcctggtcc cggttcccag cccagcggtc ctgcttcctt
      901 cgcactcgct gggtgacctt tgcaagctct gtggcctttc tgagcctcaa cttctcatct
      961 gcacggtaaa cgtagccgct ggccctgccg cccgagctgg ttgccagcac ctctggtcag
     1021 atgtcccaca aatgtttgct gggccaaaca cagagaccca ggcatggccc tggcactcgg
     1081 cgaggtcaca gtcagggagg gaaacagcga tcgctcaccc cgggggaagg agaggagaag
     1141 cagcattggg gtgtgggggt gctgcgggag cccccagggg agacctaatc cagtccagag
     1201 ggcacaggaa atgaagtttg agccttggag aatgagtagg aattcagaac acgagaagga
     1261 caccccaggg aaccgcaggg gtaaaggctg gaggtgtgat ggagcttggc ctgagagggg
     1321 acctccccag ggttaaggac gggctgcggg aggtggaaaa gccatcccag atggtcctgg
     1381 ctgaggagtg ggacctgtcc ccagggaagg ctctgaagcc agagagacgt gatccaattt
     1441 gccttcgaaa aattactctg accccagagt cagaaaagga ttggagtgag tgaggccgga
     1501 cgccagcaga caggcaggag gctcttgctc atccagcaag agaagtagca gctctcaggg
     1561 tagcaaggtg acaggagtcg acagatccca ctggccaagt aggggacatg gggcagggac
     1621 aggggctgtt gacatgcttt gaagacatcc ccgagagata gcgatcccac atcaggcaga
     1681 ccgacagtcc tggccctttc caggtaggag gacgctttgt tgccagaggg gtcaatttgg
     1741 gagcccctgg tccaggcccc agtgcagccc ccctggggcc caggatctct tgcgatgtat
     1801 ggggtatgca tgcgtgtgcg catgagggtt ctgtccagcc cacgttgcct cctccgagct
     1861 tggcaagtaa atctgcaaag accacaccaa caccccacaa aaaaatgcca actctgtgct
     1921 aatttatttt ttatatttaa gagcatgtga tgaatgctct gcttattgac ctagaaagtc
     1981 atccacagca tgtttttgag aagccgaaca gagtcctacc cctttgctgt aaatccatgc
     2041 caccctgctg cccagcctgg gaccccaggt cccttgtggg ctgcaggaaa ggccatgcca
     2101 taaggcacag cactcggcat tgtatgtctc ttaaatgaca gctcagctca ttttttttaa
     2161 aaggctacag aacaacatgg ctagtaaaga ttttgtcact ttacctgtgt gtgtgtgtgt
     2221 gtgtgtgttt agatagagag ggttgctcac caaaatatta acagtagtag aattgagatg
     2281 atttttactt ttctgaattg cttgactttt tacaaaaaac tcttatcatt tttataatca
     2341 gaataaagca agggagagcc actcggccac cttggggttt agctttgctc cagaagggct
     2401 gtggggtcag agcccccagt ggactaggaa taggctgtgg gcctggagca agcaccccct
     2461 cccagggcca gcccagggcc aggaccaaac gaggccagca ggcgtcagtg gagttgaact
     2521 tgcacagggt gctgaggctg gagtggccct gtggcctcta ggctggggac cccagggtct
     2581 ggccatcgcc actggggcca ccctgcccat tcctgagcag aaggcaacac ttccccacct
     2641 ggccaccctt ctcacttcca ggggacgagt gccctgtgat gggtcacctg cctaggtgcc
     2701 aatggggagc acagcaggag ctccagctca aggagagggt gctgcacggg ggaaaggaga
     2761 aggaggcccc aggtggcctg caaggacccc caccctacaa gtcctgccac tccctccaca
     2821 gtccttagct gaggtctgca ctttgcccca gacctgggtt ctggctggaa ggacctagca
     2881 cacagcaggc gcctaataac gtgttggatg aatgggtgaa ggggccgcta tgaaggcacc
     2941 tgcctagacg gccctcccca tgagaggatg agataggagg ctggggacgg gggcctgggg
     3001 cccactggat cttaaaatcc cgctgcccac ttggtactgc caggcctgtg gggaggctcc
     3061 ccccttactg cttctgttgg cttcaccaag acaagtgaaa gttgccttcc agttggcctc
     3121 agtattcact tagatttcct tttgtatgtg tgcattgatg cttttgatta ttagtgtctt
     3181 gctcattctc agaaagctgg ccgatttccc catttagtga ttttctgaag tccactcacg
     3241 tgtggggaag accagaatgc atggaggact tggaattcaa actaatcatc gctacctgtg
     3301 cagagcttca tcccagctga gaaggcagaa gcctagattt ctgggaggag ggccacgact
     3361 ttcttcagat ggtcaaagag gccagcaccc ctaaaaagtt aagagaccct gcctcagaga
     3421 gactgaagaa ggcctcagca ggctccctgg acagtacagc tcctcccagg agcacacagg
     3481 ggctccctga aaccaagacc caggactgag ctagctctgc acctccttac ctgagagcca
     3541 agccttctcc aaagtgagga gaggactcga cactacaaaa tggggagaac aaattaggaa
     3601 ttgtgaacac caggcaaaaa agcctgatga cggttcgcca taatgaccag ctgcctgcaa
     3661 tctggtgggg gagacaagcc ttggggaaga ggaagggagc tgccccatca cagaccaagc
     3721 agatggtgtg ctcggcaggg tggccgggac agctggagga tcgggcatgg agaggtgtac
     3781 agagtccatg gtgcagctca gactaaaaca gttgaaagag ctgcagaaca gggtttttag
     3841 ggaggcagca tgaggaccca gagtctctgc agatcccgac ctgggcacct aaatcctggg
     3901 aagagctgaa gaggggagtt ggtttccagg atctacagcg cgtctcggct ggaagaacca
     3961 ttgagcttgt ctcctggccc ctcggccaga gtttcctgtc cctgtcctgg gatcctaagc
     4021 ctgtgagaca agatgcccat tctagctggc cctggaccca ggcagctgag ggcccggccc
     4081 agccttggaa acagtggcat gaactcttcc cctcgtctgc cgtgggcgca cacagagcgt
     4141 gtgacaggca aggccgcagc ctgagcccct gctcctccct gcccacggct cccccacctt
     4201 cctgaaccca cctggcctct gatctgcacg cccacagttc ccactgggca gaacttgaaa
     4261 gtcacattcc gctctgtcgg acacctactc tgtgtaccag gtgctcacct cacctgcgag
     4321 gcactttcta agggcccacc tgtcagcttc accccagacc ttcccatctc agcaaatggc
     4381 accaccagct actttggcca aaaaaaaaag gagtcatctt tgatccccaa tttttctgat
     4441 ccatcagcaa atcctgtctg ctttacatcc attacacatc caacatcagc ccacgcctcg
     4501 gccatgctgc tcccctctgg cttggatact gcagcagcca ccagctggac tcttgaccct
     4561 ttgccttggc ctctaaaatc catttcttca atcatcaaag tgacctcgac acagcgtcat
     4621 tctgactcca ccatttcctg tcttcaagtc cttcactgtg tcctactaaa tattaaaact
     4681 ttggggactt ccctggtggc gcagtggtta agaatccgcc tgccaatgca ggggacacgg
     4741 gttcaagccc tggcccggga agatcccaca tgtgg
//
LOCUS       XM_032619969            1683 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ribosomal protein L4 (RPL4), mRNA.
ACCESSION   XM_032619969
VERSION     XM_032619969.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1683
                     /gene="RPL4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 27 long SRA reads, 9
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747581"
     CDS             270..1598
                     /gene="RPL4"
                     /codon_start=1
                     /product="60S ribosomal protein L4"
                     /protein_id="XP_032475860.1"
                     /db_xref="GeneID:116747581"
                     /translation="MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNL
                     RKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF
                     APTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEG
                     YKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGII
                     KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKSASLKSN
                     YNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKT
                     MRRNTILRQARNHKIRMDRVAAALEAKSDEKGIPGKKPVMGKKGKEAVCVKKLKKPKK
                     PKKPLVGKKAAVTKKPAAKKKPAKKPAKKKPTEKKPTEKKPTTEEKKAAA"
     misc_feature    273..1352
                     /gene="RPL4"
                     /note="60S ribosomal protein L4; Provisional; Region:
                     PTZ00428"
                     /db_xref="CDD:185611"
ORIGIN      
        1 actccgcgaa aaggagttcc ttgtttctaa gtgctctttt tggctttgga agtaaataga
       61 taccgtaatt tgacatatat gaagaaataa tacgctattt ttattttttt agattggtag
      121 agatatattt tgtgtccctg tattggtttt gagacggggc agggtggggg acgagttgaa
      181 ggttacatac agagtgggag tgctaaactc ttccttttcc tgtgggagcc gccgggttga
      241 gaggagcgtg gccttctcct ttccccgcca tggcgtgtgc tcgtccactg atatcagtgt
      301 actctgaaaa gggggagtca tctggcaaaa atgtcacttt gcctgctgtg ttcaaggctc
      361 ccattcgacc agatattgtg aactttgttc acaccaactt gcgcaaaaac aacagacagc
      421 cctatgctgt cagtgaatta gcaggtcatc aaaccagtgc tgagtcttgg ggtactggca
      481 gagctgtggc tcgaattccc agggttcgag gtggcggcac tcaccgttct ggccagggtg
      541 cttttggaaa tatgtgtcgt gggggccgca tgtttgcacc aaccaagacc tggcgacgtt
      601 ggcaccgcag agtgaataca acgcagaagc gatatgccat ctgctctgcg ttggctgcct
      661 cggctttacc agctctggtc atgtctaaag gtcatcgtat agaggaagtt cctgaacttc
      721 ctttggtggt tgaagataaa gttgaaggct acaagaagac caaggaggct gttttgctcc
      781 tgaagaaact taaggcttgg aatgatatca aaaaggtcta cgcctcgcag cgaatgagag
      841 ctggcaaagg caaaatgaga aaccgtcgcc gtatccagcg caggggaccc tgcatcattt
      901 ataatgagga caatggtatc atcaaggcct tcagaaacat ccctggaatt actctgctta
      961 atgtaagcaa actgaacatt ttgaaacttg ctcctggtgg gcacgtggga cgtttctgca
     1021 tttggactga aagtgctttc cgcaagttag atgagctgta tggcacttgg cgtaaatctg
     1081 cctccctcaa gagtaactac aacctcccca tgcacaagat gctcaataca gaccttagca
     1141 gaatcttgaa aagcccagag atccaaagag ccctccgagc accacgcaag aagattcatc
     1201 gcagagtctt gaagaagaat ccactgaaaa acctgagaat catgttgaag ctaaacccat
     1261 atgcaaagac catgcgccgg aacaccattc ttcgccaggc caggaaccac aaaatccgga
     1321 tggatagggt agcagcagca ctagaagcca aatcagatga gaaggggatt ccaggcaaga
     1381 agcctgtgat gggaaagaag ggaaaggagg ctgtttgcgt taagaagctg aagaagccga
     1441 agaagccgaa gaagcctttg gtgggaaaaa aggctgcagt gaccaagaaa ccagcagcta
     1501 aaaagaagcc tgctaaaaag cctgctaaaa agaagcccac agaaaagaaa cccacagaaa
     1561 agaaacccac cacagaggaa aagaaggctg ctgcataaac ttaaatttgt ttattcggta
     1621 aaggtcaaat cattttggac agctaatttt gaataaaaac ctgatgatca aagaggcagt
     1681 gag
//
LOCUS       XM_032619978            3162 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitogen-activated protein kinase kinase 1
            (MAP2K1), mRNA.
ACCESSION   XM_032619978
VERSION     XM_032619978.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-450               VOSU01000015.1     68937495-68937944   c
            451-503             VOSU01000015.1     68937441-68937493   c
            504-714             VOSU01000015.1     68903210-68903420   c
            715-861             VOSU01000015.1     68901782-68901928   c
            862-939             VOSU01000015.1     68894057-68894134   c
            940-991             VOSU01000015.1     68893425-68893476   c
            992-1116            VOSU01000015.1     68867470-68867594   c
            1117-1318           VOSU01000015.1     68864584-68864785   c
            1319-1383           VOSU01000015.1     68863277-68863341   c
            1384-1445           VOSU01000015.1     68860573-68860634   c
            1446-1491           VOSU01000015.1     68860125-68860170   c
            1492-3162           VOSU01000015.1     68857799-68859469   c
FEATURES             Location/Qualifiers
     source          1..3162
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3162
                     /gene="MAP2K1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 10 long SRA reads, 19 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747589"
     CDS             424..1605
                     /gene="MAP2K1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: dual specificity
                     mitogen-activated protein kinase kinase 1"
                     /protein_id="XP_032475869.1"
                     /db_xref="GeneID:116747589"
                     /translation="MPKKKPTPIQLNPAPDGSAVNGTSSAETNLEALQKKLEELELDE
                     QQRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE
                     IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR
                     IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS
                     MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELVFG
                     CQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEF
                     QDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEVDFAGWLCSTIGLNQPSTPTHVAG
                     I"
     misc_feature    607..1563
                     /gene="MAP2K1"
                     /note="Catalytic domain of the dual-specificity Protein
                     Kinase, Mitogen-Activated Protein (MAP)/Extracellular
                     signal-Regulated Kinase (ERK) Kinase 1; Region: PKc_MEK1;
                     cd06650"
                     /db_xref="CDD:270816"
     misc_feature    order(643..657,667..669,706..708,712..714,802..804,
                     850..861,868..873,880..882,991..993,997..1008,1012..1014,
                     1042..1047,1054..1056,1090..1101,1105..1107,1186..1188,
                     1213..1215)
                     /gene="MAP2K1"
                     /note="active site"
                     /db_xref="CDD:270816"
     misc_feature    order(643..657,661..663,667..669,706..708,712..714,
                     802..804,850..861,868..873,877..882,997..999,1003..1008,
                     1012..1014,1045..1047)
                     /gene="MAP2K1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270816"
     misc_feature    order(652..657,991..993,997..1005,1054..1056,1090..1101,
                     1105..1107,1186..1188,1213..1215)
                     /gene="MAP2K1"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270816"
     misc_feature    order(652..657,712..714,766..768,775..777,802..804,
                     844..846,850..852,1045..1050,1054..1059,1066..1071,
                     1078..1080)
                     /gene="MAP2K1"
                     /note="noncompetitive inhibitor binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270816"
     misc_feature    order(664..666,724..729,832..834,1111..1113,1123..1134,
                     1354..1356,1363..1368,1375..1380)
                     /gene="MAP2K1"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:270816"
     misc_feature    1042..1107
                     /gene="MAP2K1"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270816"
     misc_feature    order(1084..1101,1105..1107,1111..1113,1123..1134,
                     1348..1356,1363..1368,1375..1377)
                     /gene="MAP2K1"
                     /note="KSR interface [polypeptide binding]; other site"
                     /db_xref="CDD:270816"
ORIGIN      
        1 cctcccccgc cctccaggcc ctctggacta ctgcgccgag tcgcttggaa cgcggcagtg
       61 gcggcggcgc actttcccgg gctgtggctg gagcagcgct gtggtgcgcg cgcggcgggg
      121 cccctcgagc cctgggggac cggtggactg agggagagcg ggagggaatc ccggggctgc
      181 ggtgctgcgc cggcggggaa gcccttcggt cccctgtgag ccgagcaagt ggggcagggg
      241 tctcctgaga ccgccactgg ccactcggcc ctgacgggac cgcgcagagc gcgtcccccg
      301 aaggcaaccc ccgggcccgc ggccctgact tggccccgcg cggcgggcgc ggggcagctc
      361 agagggagga agcaagaggg gccgccctcc ctcggagttg cgagcgcctt ccccgggtcc
      421 aaaatgccca agaagaagcc gacgcccatc cagctgaacc cggcccccga cggctccgcg
      481 gttaacggga ccagctcggc ggagaccaac ctggaggcct tgcaaaagaa gctggaggag
      541 ctggagctcg atgaacagca gcggaagcgc cttgaggcct tccttaccca gaagcagaag
      601 gtgggagaac tgaaggatga cgactttgag aagatcagtg agctgggtgc tggcaatgga
      661 ggtgtggtgt tcaaggtctc ccacaagcca tccggtctgg ttatggccag aaagctaatt
      721 cacctggaga tcaaacctgc aatccggaac cagatcatac gggagctgca ggttctacat
      781 gagtgcaact ccccttacat tgtgggcttc tacggtgcat tctacagtga tggcgagatc
      841 agtatctgca tggagcatat ggatgggggt tccttggatc aagtcctgaa gaaagctgga
      901 agaattcctg aacaaatttt aggaaaagtt agcattgctg taataaaagg cctgacatac
      961 ctgagggaga agcataagat tatgcacaga gatgtcaagc cttccaacat cctagtgaac
     1021 tcccgtgggg agatcaagct ctgtgacttt ggggtcagcg ggcagctcat cgactccatg
     1081 gctaactcct tcgtgggcac aaggtcctac atgtcgccag aaagactcca ggggactcat
     1141 tactcggtgc agtcggacat ctggagcatg gggctctctc tggttgagat ggcggtcggg
     1201 aggtatccca tccctcctcc agatgccaag gagctggagc tggtgtttgg gtgccaggtg
     1261 gagggagatg cggctgagac accgccccgg ccaaggactc ccggaaggcc cctcagctct
     1321 tatggaatgg acagccgacc tcccatggca atttttgagt tgttggatta catagtcaat
     1381 gagcctcctc caaaattgcc cagtggagta ttcagtctgg aatttcaaga ttttgtgaat
     1441 aaatgcttaa taaaaaaccc tgcagagaga gcagatttga agcaactcat ggttcatgct
     1501 tttatcaaga gatctgatgc tgaagaagtg gattttgcag gttggctctg ctccaccatc
     1561 ggccttaacc agcccagcac acccacccac gtggctggta tctaagcatt ggggaagagc
     1621 cgagtcccct gcccagcagc atgccatgtt gcttctgggc ctccttccca tgcctgtctc
     1681 tgttcagatg tgcattttac ctatgacaaa ggatgaagaa cacagcatgt gccaaaattc
     1741 tactcgtgtc attttcaata ttttcatctt tattcttatt actatcgtta ttcccgagtg
     1801 gactggcttt gtgcttgggg ctatttttgt gtatgctgat gatcaaaacg tgcaatgttg
     1861 aactacagtg aaactttggt gactgtgggt cgtccttctt actgaaaact gcactgctct
     1921 cccaggctgg ctgcctgtgt ttttgggatt cttttgacac ttggtggtac ttcattcttg
     1981 ccaggcttac cttctttcca attgagtagg aagggccttg taagatcctt cacaggcagt
     2041 gcatgtgaag catgctttgc tgctatgaaa atgagcatca gagagagtag atcatgttat
     2101 ttcattatgt ttttgctttt ggtgtagaat tcagcggttt ccatcaaaat ctagccagag
     2161 cccttcactg ccatgatagc tggggcttca ccagtctgtc tactgtgatg atctgtagac
     2221 ttctggttgt atttctgtat ttatttttaa atataccctg tgggatattt agtgctatgt
     2281 ctctttaagt ttggattagc gtttctaaaa tggtggagtt actctgaatg ttacaaatgg
     2341 atcaaggcat taacatgtat gagatttatc tttccccaaa tccaagtact gatgctattg
     2401 taaacaacag tgtgtatagt gcctaaaaac tgtatggaaa tccttttacc attttaatcc
     2461 agacgtttaa caaatctaat ctcttattct aataaataca ctatcaattc aaagggtgaa
     2521 aggtatttct gcttttgtgg agggattttc agtatctgta gtgcataaga aatcaaggca
     2581 tttagcagcc acacattact gagagggaaa aggcaaagac aggaaggagg ctggaaggcg
     2641 gaaataccac actgaggaca agctcagtgc tttggactaa tgcggcttcc tgtaattcta
     2701 atctttggac tttgtccagt tcttctcagc aagcaccctt atctttcaac cacttttcct
     2761 gtggacctgt gaaaagatgc cactgattcc ttccgtcttt ttatacaagg gaaaaacagt
     2821 aggtgggggt aggattgggg ggcggccggt gcctgactgg cactggagcc tccacccggg
     2881 actgtgccgt gctgctatgc tccactgagc aatggcttcc cttctctctc cagttacacc
     2941 tgagacactt tcctggagag gaaacaagtg cctggccctg ggtttgtcct gactgtgggg
     3001 cggcagtgaa gccacagaaa atgaagctgt gtcccaattg gctacccttc tttctttgaa
     3061 cagtaacttc tgagatttag gttatatgtg aggctgcctt ccctcatttt cttcgagagc
     3121 aggtgacaga aaaccaaaat aaatatatat ttaacaataa aa
//
LOCUS       XM_032619990            2632 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nuclear RNA activating complex
            polypeptide 5 (SNAPC5), transcript variant X1, mRNA.
ACCESSION   XM_032619990
VERSION     XM_032619990.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2632
                     /gene="SNAPC5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747596"
     CDS             1283..1582
                     /gene="SNAPC5"
                     /codon_start=1
                     /product="snRNA-activating protein complex subunit 5
                     isoform X1"
                     /protein_id="XP_032475881.1"
                     /db_xref="GeneID:116747596"
                     /translation="MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSGR
                     EDEMLSSQPAPEQSHDQMLVHVDNEASINQTALELSTRSHVPEEEEEEEEEESDS"
     misc_feature    1283..1534
                     /gene="SNAPC5"
                     /note="snRNA-activating protein complex subunit 19, SNAPc
                     subunit 19; Region: SNAPC5; pfam15497"
                     /db_xref="CDD:464748"
ORIGIN      
        1 cgtaccacaa aaaaaaaaaa aaaaaaaaaa aaggcagtga gaaacatgac ttggatgtgt
       61 tgtgtgaatc ttggttagaa ttttttttac tgacactgtt cttcataatt caagcctttt
      121 agtctataat tcaagccttt taagtctggt ataaaatgga gccttggatt tagtataaaa
      181 tccacgaagt tgaatgagaa gtgggatatt ccataaatcc agatataaaa tccactttgt
      241 aagtaacaat gttttgagaa acatgtttaa aagacttctc ccagaaatac acagaaactc
      301 tttagctccc ctctcccata aaaaaatcac cttggaaaat gggtgaagtt cggttaaaga
      361 tctgacattt tcagtaacca ctagagggca gaatcagaat acatttttga aagtatagca
      421 gtaagaaact gacgtttcct tcagaggtgt tacaacctgg tgttagaata cagttgatgg
      481 agggaatgct tgccaccttt ttgatatctg gacccttggt atgaaaagtg ctaggagctt
      541 tttttcacaa ccacgtgtgc gtttttagta ggcatgaatg tgttgaccga gcatgcgcat
      601 gtgcagagaa tgtacccaaa cgttcgtcct tccctacttt gtcatgtctg ggtcttgttt
      661 tgcatctggc tttgttcccg ctggcagtcc atccttgtat tcatagatca agaaatctta
      721 gttccttagc atgaaaagac accgtccaat ttgttaaaac accgctctgt cttccgcgct
      781 ttaatttgcg caggcctcct gtgaaacccc tttcacgtga ctgaaaatcc tcgcctgcct
      841 ggaccttcaa cacagggctc ctgtaccatg caccactata cgctggcaat agtcgctgcc
      901 ttcaaacgcg tcggcaggtt tgcgggagcg aaagcagccg cctgacgcag caccagtgga
      961 agggtgccaa cagtgctgtt caactgaagc acctgacaca tgctatctga ccatttttat
     1021 ctctaggtcc tttacagctc cgaggcattt tgccttagga atcctcatca ttggaatcta
     1081 ggtttttggt ttaaaacccc acttcgtccg tgggccgagc tcgtccgcgg aggagcggcc
     1141 accccagccg ccagcaggaa gcggccgccc cgccccaaag tgccgccagc cccgcccgac
     1201 ccgctcttcc gtttccggta gcgcggcgcg gaggtggcgt catctgcgag tgcccggccg
     1261 gcagacagcg cgaagacgcg cgatgttgag ccggcttcag gagctgcgca aggaagagga
     1321 gacgctgctc cggttgaaag cggccctgca cgaccagctg aaccggctca aggttgaaga
     1381 actggccctc cagtcaatga ttagttctgg gagagaagat gagatgctgt cttctcaacc
     1441 tgcgcctgaa cagtcacatg atcagatgtt ggtgcatgta gacaatgaag catcaatcaa
     1501 ccagaccgca ctggagttga gcacaaggag ccatgtgcca gaagaggagg aggaggagga
     1561 agaggaagaa tcagattcct gaaggggaga agagccaggg ttagtcacag gagttaagtt
     1621 ctaagccgta ggaactttct ctcttcaaag aattcttgcc atgggccctg tagcctcctt
     1681 taaaaggaag caagaacttt aggaggatgt gtagttgtag aaatggttcc atcaataact
     1741 caagtttcag agtgctttaa ccaaaattag tgacatacag aaaagctgag atgcagtgtt
     1801 tcaatattga gcaatatggg tggtgctgtg tttatattcc ggtcagattc agtaattgtg
     1861 ttcaaaacca aaaacttcct ctgaaatgct attgagaagg tctggcattt gcaaaaaggg
     1921 cagagtttaa atacaagcca gcctttacaa tcaacaaggc ctcttttaag aaaaccaatt
     1981 ataaacactg tttgcatgcc attgaaccct tgtgagcaga gctaggccac agtgtgggag
     2041 agacagatga caaagaggac agagggccac ttgagagcac aagctgttgc cacctctcag
     2101 tgacatcgta aaactgccta ctaacatgct ttgtatggct gttatcacat ctaggttgag
     2161 acatcactat ggtaaaatgt gcttagaaat aaagataaat agtcgtcatg cagcttgctg
     2221 ctttccagac agaaacagaa aagggtcagt tcctctgggg cgaacaatat agtaggatgg
     2281 ttgaaaaccc atttctggac ttaggaaatg tgccattgaa ggatcactag gcttgggagg
     2341 ttggattttg taataaagag atgatagtta cagagtaaga gttgttaaac ttcgtatttg
     2401 aagttgagac tcatttctgc atactgtccc ttttccactg aatgtacaga caagtagttg
     2461 cttaatttta tgaaagtaat tggccctgcc cagaaaagcc aaacaaaaca caaacatcct
     2521 cctcaagcac agctccttac aaaactgttc cagaagagag cacagacata tttgttaata
     2581 tttcattaaa gttattttga gctactctta caggaagtag ccagaagttt aa
//
LOCUS       XM_032619999            2622 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus small nuclear RNA activating complex
            polypeptide 5 (SNAPC5), transcript variant X2, mRNA.
ACCESSION   XM_032619999
VERSION     XM_032619999.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2622
                     /gene="SNAPC5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 2 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747596"
     CDS             1276..1572
                     /gene="SNAPC5"
                     /codon_start=1
                     /product="snRNA-activating protein complex subunit 5
                     isoform X2"
                     /protein_id="XP_032475890.1"
                     /db_xref="GeneID:116747596"
                     /translation="MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSGR
                     EDEMLSSQPAPEQSHDMLVHVDNEASINQTALELSTRSHVPEEEEEEEEEESDS"
     misc_feature    1276..1524
                     /gene="SNAPC5"
                     /note="snRNA-activating protein complex subunit 19, SNAPc
                     subunit 19; Region: SNAPC5; pfam15497"
                     /db_xref="CDD:464748"
ORIGIN      
        1 caaaaaaaaa aaaaaaaaaa aaaaaggcag tgagaaacat gacttggatg tgttgtgtga
       61 atcttggtta gaattttttt tactgacact gttcttcata attcaagcct tttagtctat
      121 aattcaagcc ttttaagtct ggtataaaat ggagccttgg atttagtata aaatccacga
      181 agttgaatga gaagtgggat attccataaa tccagatata aaatccactt tgtaagtaac
      241 aatgttttga gaaacatgtt taaaagactt ctcccagaaa tacacagaaa ctctttagct
      301 cccctctccc ataaaaaaat caccttggaa aatgggtgaa gttcggttaa agatctgaca
      361 ttttcagtaa ccactagagg gcagaatcag aatacatttt tgaaagtata gcagtaagaa
      421 actgacgttt ccttcagagg tgttacaacc tggtgttaga atacagttga tggagggaat
      481 gcttgccacc tttttgatat ctggaccctt ggtatgaaaa gtgctaggag ctttttttca
      541 caaccacgtg tgcgttttta gtaggcatga atgtgttgac cgagcatgcg catgtgcaga
      601 gaatgtaccc aaacgttcgt ccttccctac tttgtcatgt ctgggtcttg ttttgcatct
      661 ggctttgttc ccgctggcag tccatccttg tattcataga tcaagaaatc ttagttcctt
      721 agcatgaaaa gacaccgtcc aatttgttaa aacaccgctc tgtcttccgc gctttaattt
      781 gcgcaggcct cctgtgaaac ccctttcacg tgactgaaaa tcctcgcctg cctggacctt
      841 caacacaggg ctcctgtacc atgcaccact atacgctggc aatagtcgct gccttcaaac
      901 gcgtcggcag gtttgcggga gcgaaagcag ccgcctgacg cagcaccagt ggaagggtgc
      961 caacagtgct gttcaactga agcacctgac acatgctatc tgaccatttt tatctctagg
     1021 tcctttacag ctccgaggca ttttgcctta ggaatcctca tcattggaat ctaggttttt
     1081 ggtttaaaac cccacttcgt ccgtgggccg agctcgtccg cggaggagcg gccaccccag
     1141 ccgccagcag gaagcggccg ccccgcccca aagtgccgcc agccccgccc gacccgctct
     1201 tccgtttccg gtagcgcggc gcggaggtgg cgtcatctgc gagtgcccgg ccggcagaca
     1261 gcgcgaagac gcgcgatgtt gagccggctt caggagctgc gcaaggaaga ggagacgctg
     1321 ctccggttga aagcggccct gcacgaccag ctgaaccggc tcaaggttga agaactggcc
     1381 ctccagtcaa tgattagttc tgggagagaa gatgagatgc tgtcttctca acctgcgcct
     1441 gaacagtcac atgatatgtt ggtgcatgta gacaatgaag catcaatcaa ccagaccgca
     1501 ctggagttga gcacaaggag ccatgtgcca gaagaggagg aggaggagga agaggaagaa
     1561 tcagattcct gaaggggaga agagccaggg ttagtcacag gagttaagtt ctaagccgta
     1621 ggaactttct ctcttcaaag aattcttgcc atgggccctg tagcctcctt taaaaggaag
     1681 caagaacttt aggaggatgt gtagttgtag aaatggttcc atcaataact caagtttcag
     1741 agtgctttaa ccaaaattag tgacatacag aaaagctgag atgcagtgtt tcaatattga
     1801 gcaatatggg tggtgctgtg tttatattcc ggtcagattc agtaattgtg ttcaaaacca
     1861 aaaacttcct ctgaaatgct attgagaagg tctggcattt gcaaaaaggg cagagtttaa
     1921 atacaagcca gcctttacaa tcaacaaggc ctcttttaag aaaaccaatt ataaacactg
     1981 tttgcatgcc attgaaccct tgtgagcaga gctaggccac agtgtgggag agacagatga
     2041 caaagaggac agagggccac ttgagagcac aagctgttgc cacctctcag tgacatcgta
     2101 aaactgccta ctaacatgct ttgtatggct gttatcacat ctaggttgag acatcactat
     2161 ggtaaaatgt gcttagaaat aaagataaat agtcgtcatg cagcttgctg ctttccagac
     2221 agaaacagaa aagggtcagt tcctctgggg cgaacaatat agtaggatgg ttgaaaaccc
     2281 atttctggac ttaggaaatg tgccattgaa ggatcactag gcttgggagg ttggattttg
     2341 taataaagag atgatagtta cagagtaaga gttgttaaac ttcgtatttg aagttgagac
     2401 tcatttctgc atactgtccc ttttccactg aatgtacaga caagtagttg cttaatttta
     2461 tgaaagtaat tggccctgcc cagaaaagcc aaacaaaaca caaacatcct cctcaagcac
     2521 agctccttac aaaactgttc cagaagagag cacagacata tttgttaata tttcattaaa
     2581 gttattttga gctactctta caggaagtag ccagaagttt aa
//
LOCUS       XM_032620012            3564 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Ras and Rab interactor 3 (RIN3),
            transcript variant X1, mRNA.
ACCESSION   XM_032620012
VERSION     XM_032620012.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3564
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3564
                     /gene="RIN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747604"
     CDS             192..3197
                     /gene="RIN3"
                     /codon_start=1
                     /product="ras and Rab interactor 3 isoform X1"
                     /protein_id="XP_032475903.1"
                     /db_xref="GeneID:116747604"
                     /translation="MIRRVGAPECADPAGPIPDVGKGEGQQEEKEDGVGPRLPVTPKN
                     CLPLRGISVLEKLVKTCPVWLHLGLGRAEATRILHREAAGTFLVRRDSSLKHPVLCVH
                     FPSPNESSSAVLEYTIKEEKSILYLEGSVLVFEDIFRLIAFYCVSRDLLPFKLRLPQA
                     ILEASSFTDLKTISNLGLGFWDSSLNPRPGGGSPVGAPPASILRSSAHYENCSCEIEL
                     SIGNGHLWFVNPVFIEDCGSSLPADQLPPGSCPLPSPPASEATSPTSRWAPRRPAPPP
                     PPLPLHPPSSSRPPPPGPPLACPLPGSPSAAAPPPPHPKALPPSPPASAPRLAPHTPG
                     PAELPSQPPMTACERLPRPLAGLGPLREEEMKPGAAPSPLQSPVPPAPTKKSLPAAPP
                     RRRIAEKASLEDQSAGKADRGAAAEGDPVGLSRAFPLRLPPQGTSGSPGDRPQRTTEQ
                     GQEAVAKAGDLGSMPEPPRNIRPPPVPPPRKKRLSRQLASVLPIPLETAELSTDREAP
                     ENPRPSPPGEGQGPAPTAGTQSPHARPGARPQSTPEFKGSLASLSDSLGVPASAADQD
                     SYSTSSTEEELEQFSSPGVKKKSSMILGKARHRLSFVSFASVFSAFLSNNRKLYKKVV
                     ELAQDKASYFGSLVQDYKVYSLEMMAHQTSSMEMLQEIRTMMTQLKSYLLQSTELKAL
                     VDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHEIHRKDGSLQQLKENQLVILAT
                     TTTDLGVTTSVPEVPIMEKILQKFASMHKAYSPEKKISTLLKTCKLIYDSMALGNPGK
                     SYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIK
                     NYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFICVSYLEPEQQSRTLAS
                     RADTLAEVLCAQCAEKFEVVQPQDHRLFVLVDGRCFQLADEALPHRIKGYLLRSEPKR
                     DFHFVYRPLDGGGGSGGPPCLVVREPNFL"
     misc_feature    348..650
                     /gene="RIN3"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(402..404,456..458,534..536,540..542)
                     /gene="RIN3"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(537..539,618..620)
                     /gene="RIN3"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
     misc_feature    <906..1820
                     /gene="RIN3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2460..2771
                     /gene="RIN3"
                     /note="Vacuolar sorting protein 9 (VPS9) domain; Region:
                     VPS9; pfam02204"
                     /db_xref="CDD:460489"
     misc_feature    2874..3137
                     /gene="RIN3"
                     /note="Ras-associating (RA) domain found in Ras and Rab
                     interactor 3 (Rin3); Region: RA_Rin3; cd16130"
                     /db_xref="CDD:340547"
ORIGIN      
        1 agggagcgag cgccccagag cgtggcggcc gcggcggctg tggcttcccg actccgcgcg
       61 gggctggcgg cggtgcccgc gcgggccctt ccccagggca gcgccagggg catgcgggcg
      121 cccggggccc cgcggcccgc gccgcccggt gcctgagccc ctgcgttcac cgtcccggag
      181 ctgctggcgg catgatccga cgggtcgggg cgcccgagtg cgcggacccc gcgggtccta
      241 ttccagatgt tggcaaagga gagggacagc aagaggagaa ggaagatggc gtggggcctc
      301 gtctgccagt cactccgaag aactgccttc ctctccgggg catcagcgtc ctggagaagc
      361 tcgtcaagac ctgcccggtg tggctgcatc tgggtctggg ccgggcagag gcgaccagga
      421 tcctgcaccg ggaggcggcc gggacgttcc tggtccgccg ggacagcagc ttgaagcacc
      481 cggtgctctg tgtgcacttc ccttctccaa acgagagctc atccgcggtg ctggaataca
      541 ccattaaaga agaaaaatca atattgtacc tggaaggctc ggttcttgtg tttgaggaca
      601 tcttcagact gatcgcattc tactgtgtca gtagagattt actgcccttc aagctgaggc
      661 tgccccaggc catccttgag gccagcagct tcacagacct caagaccatc tccaacctgg
      721 gcctgggctt ctgggactcc tcgctgaacc cccggccagg aggtgggagc ccagtgggag
      781 cgccccccgc ctccattctc aggtcatccg cccattacga aaactgctcg tgtgaaatcg
      841 agctgtccat aggaaatggc cacctgtggt ttgtgaatcc agtcttcatc gaggactgcg
      901 gcagctccct gccggctgac cagctgcccc cgggaagctg ccccttgccg tcgcctcccg
      961 cctccgaggc tacctccccc acctccaggt gggcccctcg ccgcccagct ccccctcccc
     1021 cgccgctccc tctccatccc cccagctcca gccggcctcc tccccccggc ccccctctgg
     1081 cctgccctct gcccggttct ccctcagcgg ctgctccccc gcctccgcat cccaaggccc
     1141 ttcctccctc acccccagcg tctgcccccc gcctggcacc ccacacccca ggccccgcgg
     1201 agcttccaag ccagccaccc atgacagcct gtgagaggct cccgcgtccc ctcgcaggcc
     1261 tgggccccct cagggaggaa gagatgaagc cgggggcagc ccccagcccc ttgcagtccc
     1321 ccgtccctcc agcgcccacg aagaagagcc tccccgccgc ccctcccagg cgccgcatcg
     1381 cggagaaggc gtccctggag gaccagagtg cagggaaggc ggacaggggg gcggcagcgg
     1441 agggggaccc ggtgggtctt tccagggcat tcccgctccg cctgcctccc caggggacct
     1501 ccggcagccc tggggacagg cctcagagaa ccacagagca aggccaggaa gcagtggcca
     1561 aagccggcga tctgggcagc atgccagagc ctccgaggaa tattcgacca cccccagtcc
     1621 cacctcccag gaagaaacgg ctctcccggc agctggcctc ggtcctccca attcccctgg
     1681 agactgccga gctttccacg gacagggagg cccccgagaa ccccaggccc agtccacctg
     1741 gagaaggcca aggtcctgcc cccacggctg gcactcagag cccgcatgcc cggcccgggg
     1801 cccggcccca gagcaccccg gagttcaagg gctccctggc ctccctctcg gacagcttgg
     1861 gggtgcccgc ctcggccgca gaccaggact cctactcgac cagcagcaca gaggaggagc
     1921 tggagcagtt cagcagcccc ggcgtcaaga agaagtcgtc gatgatcctg ggcaaggccc
     1981 gccaccgcct gagcttcgtg agcttcgcca gcgtcttcag cgccttcctc tccaacaacc
     2041 gcaagctgta caagaaggtg gtggagctgg cccaggacaa ggcctcgtac ttcggcagcc
     2101 tggtgcagga ctacaaggtg tacagcctgg agatgatggc gcaccagacc tccagtatgg
     2161 agatgctgca ggagatccgc accatgatga cccagctcaa gagctacctg ctgcagagca
     2221 ccgagctcaa ggccctggtg gaccccgccc tgcactccga ggaggagcta gaagccattg
     2281 tggagtctgc cttgtacaag tgtgtcctga agcccctgaa ggaagccatc aactcctgcc
     2341 tgcatgagat ccacaggaag gacggctcgc tgcagcagct caaggagaac cagctggtga
     2401 tcctagccac cacgaccacc gacctgggcg tgaccactag cgtgccggag gtgcccatca
     2461 tggagaagat cctgcagaag tttgccagta tgcacaaggc ctactcgccc gagaagaaga
     2521 tctccaccct gctcaagacc tgtaagctca tctacgactc catggccctt ggcaacccag
     2581 ggaagtccta cggggcagac gacttcctgc cggtgctcat gtacgtgctg gcccgcagca
     2641 atctcacgga gatgcttctc aacgtggagt acatgatgga gctcatggac cctgccctgc
     2701 agctggggga gggttcctac tatctgacca ccacctacgg ggccctggag cacatcaaga
     2761 actacgacaa gatcacggtg acccggcagc tgagcgtgga ggtgcaggac tccatccacc
     2821 gctgggagcg ccggcgcacg ctcaacaagg cccgggcctc ccgctcctcc gtgcaggact
     2881 tcatctgcgt gtcgtacctg gagcccgagc agcaatcacg gacgctggcg tcgcgggcgg
     2941 acacgttggc cgaggtgctg tgcgctcagt gcgcagagaa gttcgaggtg gtgcagcccc
     3001 aggaccaccg gctcttcgtg ctggtggacg ggcgctgctt ccagctggcc gacgaggcgc
     3061 tgccgcaccg catcaagggc tacctgctgc ggagcgagcc caagcgcgac ttccacttcg
     3121 tgtaccggcc cctggacggc ggcgggggca gcgggggccc gccctgcctc gtggtgcggg
     3181 agcccaactt cctgtgaggc cggggctgca gcgcctccaa aggcagtgtt cacccaggat
     3241 ggagctggga tgctctggac cctcccagca cctcaggagc atctcagggt gtgtgaggag
     3301 acagccctcc cccgatccct gcataagagc ctgcacttgg ctctcagcac ccacagcccc
     3361 gccgcagctc ccaagccact ccaggagcag ccagacgtgc actgggacct ccaagtgaag
     3421 ccagctccgt ggctacgtgg gtgagcgcag cctcggccac gggggacatt gacagggccg
     3481 ttgccttggg gcgcacccca gggctgtggc acctgtggca agaggcaccg tgtggggagt
     3541 gtttaataaa agcccttttg aaaa
//
LOCUS       XM_032620018            3013 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Ras and Rab interactor 3 (RIN3),
            transcript variant X2, mRNA.
ACCESSION   XM_032620018
VERSION     XM_032620018.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3013
                     /gene="RIN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747604"
     CDS             198..2978
                     /gene="RIN3"
                     /codon_start=1
                     /product="ras and Rab interactor 3 isoform X2"
                     /protein_id="XP_032475909.1"
                     /db_xref="GeneID:116747604"
                     /translation="MIRRVGAPECADPAGPIPDVGKGEGQQEEKEDGVGPRLPVTPKN
                     CLPLRGISVLEKLVKTCPVWLHLGLGRAEATRILHREAAGTFLVRRDSSLKHPVLCVH
                     FPSPNESSSAVLEYTIKEEKSILYLEGSVLVFEDIFRLIAFYCVSRDLLPFKLRLPQA
                     ILEASSFTDLKTISNLGLGFWDSSLNPRPGGGSPVGAPPASILRSSAHYENCSCEIEL
                     SIGNGHLWFVNPVFIEDCGSSLPADQLPPGSCPLPSPPASEATSPTSRWAPRRPAPPP
                     PPLPLHPPSSSRPPPPGPPLACPLPGSPSAAAPPPPHPKALPPSPPASAPRLAPHTPG
                     PAELPSQPPMTACERLPRPLAGLGPLREEEMKPGAAPSPLQSPVPPAPTKKSLPAAPP
                     RRRIAEKASLEDQSAGKADRGAAAEGDPVGLSRAFPLRLPPQGTSGSPGDRPQRTTEQ
                     GQEAVAKAGDLGSMPEPPRNIRPPPVPPPRKKRLSRQLASVLPIPLETAELSTDREAP
                     ENPRPSPPGEGQGPAPTAGTQSPHARPGARPQSTPEFKGSLASLSDSLGVPASAADQD
                     SYSTSSTEEELEQFSSPGVKKKSSMILGKARHRLSFVSFASVFSAFLSNNRKLYKKVV
                     ELAQDKASYFGSLVQDYKVYSLEMMAHQTSSMEMLQEIRTMMTQLKSYLLQSTELKAL
                     VDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHEIHRKDGSLQQLKENQLVILAT
                     TTTDLGVTTSVPEVPIMEKILQKFASMHKAYSPEKKISTLLKTCKLIYDSMALGNPGK
                     SYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIK
                     NYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQRGPLGYREDKGVVQDHAAP
                     HSCPSSQHRDGG"
     misc_feature    354..656
                     /gene="RIN3"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(408..410,462..464,540..542,546..548)
                     /gene="RIN3"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(543..545,624..626)
                     /gene="RIN3"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
     misc_feature    <912..1826
                     /gene="RIN3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2466..2777
                     /gene="RIN3"
                     /note="Vacuolar sorting protein 9 (VPS9) domain; Region:
                     VPS9; pfam02204"
                     /db_xref="CDD:460489"
ORIGIN      
        1 aagtagaggg agcgagcgcc ccagagcgtg gcggccgcgg cggctgtggc ttcccgactc
       61 cgcgcggggc tggcggcggt gcccgcgcgg gcccttcccc agggcagcgc caggggcatg
      121 cgggcgcccg gggccccgcg gcccgcgccg cccggtgcct gagcccctgc gttcaccgtc
      181 ccggagctgc tggcggcatg atccgacggg tcggggcgcc cgagtgcgcg gaccccgcgg
      241 gtcctattcc agatgttggc aaaggagagg gacagcaaga ggagaaggaa gatggcgtgg
      301 ggcctcgtct gccagtcact ccgaagaact gccttcctct ccggggcatc agcgtcctgg
      361 agaagctcgt caagacctgc ccggtgtggc tgcatctggg tctgggccgg gcagaggcga
      421 ccaggatcct gcaccgggag gcggccggga cgttcctggt ccgccgggac agcagcttga
      481 agcacccggt gctctgtgtg cacttccctt ctccaaacga gagctcatcc gcggtgctgg
      541 aatacaccat taaagaagaa aaatcaatat tgtacctgga aggctcggtt cttgtgtttg
      601 aggacatctt cagactgatc gcattctact gtgtcagtag agatttactg cccttcaagc
      661 tgaggctgcc ccaggccatc cttgaggcca gcagcttcac agacctcaag accatctcca
      721 acctgggcct gggcttctgg gactcctcgc tgaacccccg gccaggaggt gggagcccag
      781 tgggagcgcc ccccgcctcc attctcaggt catccgccca ttacgaaaac tgctcgtgtg
      841 aaatcgagct gtccatagga aatggccacc tgtggtttgt gaatccagtc ttcatcgagg
      901 actgcggcag ctccctgccg gctgaccagc tgcccccggg aagctgcccc ttgccgtcgc
      961 ctcccgcctc cgaggctacc tcccccacct ccaggtgggc ccctcgccgc ccagctcccc
     1021 ctcccccgcc gctccctctc catcccccca gctccagccg gcctcctccc cccggccccc
     1081 ctctggcctg ccctctgccc ggttctccct cagcggctgc tcccccgcct ccgcatccca
     1141 aggcccttcc tccctcaccc ccagcgtctg ccccccgcct ggcaccccac accccaggcc
     1201 ccgcggagct tccaagccag ccacccatga cagcctgtga gaggctcccg cgtcccctcg
     1261 caggcctggg ccccctcagg gaggaagaga tgaagccggg ggcagccccc agccccttgc
     1321 agtcccccgt ccctccagcg cccacgaaga agagcctccc cgccgcccct cccaggcgcc
     1381 gcatcgcgga gaaggcgtcc ctggaggacc agagtgcagg gaaggcggac aggggggcgg
     1441 cagcggaggg ggacccggtg ggtctttcca gggcattccc gctccgcctg cctccccagg
     1501 ggacctccgg cagccctggg gacaggcctc agagaaccac agagcaaggc caggaagcag
     1561 tggccaaagc cggcgatctg ggcagcatgc cagagcctcc gaggaatatt cgaccacccc
     1621 cagtcccacc tcccaggaag aaacggctct cccggcagct ggcctcggtc ctcccaattc
     1681 ccctggagac tgccgagctt tccacggaca gggaggcccc cgagaacccc aggcccagtc
     1741 cacctggaga aggccaaggt cctgccccca cggctggcac tcagagcccg catgcccggc
     1801 ccggggcccg gccccagagc accccggagt tcaagggctc cctggcctcc ctctcggaca
     1861 gcttgggggt gcccgcctcg gccgcagacc aggactccta ctcgaccagc agcacagagg
     1921 aggagctgga gcagttcagc agccccggcg tcaagaagaa gtcgtcgatg atcctgggca
     1981 aggcccgcca ccgcctgagc ttcgtgagct tcgccagcgt cttcagcgcc ttcctctcca
     2041 acaaccgcaa gctgtacaag aaggtggtgg agctggccca ggacaaggcc tcgtacttcg
     2101 gcagcctggt gcaggactac aaggtgtaca gcctggagat gatggcgcac cagacctcca
     2161 gtatggagat gctgcaggag atccgcacca tgatgaccca gctcaagagc tacctgctgc
     2221 agagcaccga gctcaaggcc ctggtggacc ccgccctgca ctccgaggag gagctagaag
     2281 ccattgtgga gtctgccttg tacaagtgtg tcctgaagcc cctgaaggaa gccatcaact
     2341 cctgcctgca tgagatccac aggaaggacg gctcgctgca gcagctcaag gagaaccagc
     2401 tggtgatcct agccaccacg accaccgacc tgggcgtgac cactagcgtg ccggaggtgc
     2461 ccatcatgga gaagatcctg cagaagtttg ccagtatgca caaggcctac tcgcccgaga
     2521 agaagatctc caccctgctc aagacctgta agctcatcta cgactccatg gcccttggca
     2581 acccagggaa gtcctacggg gcagacgact tcctgccggt gctcatgtac gtgctggccc
     2641 gcagcaatct cacggagatg cttctcaacg tggagtacat gatggagctc atggaccctg
     2701 ccctgcagct gggggagggt tcctactatc tgaccaccac ctacggggcc ctggagcaca
     2761 tcaagaacta cgacaagatc acggtgaccc ggcagctgag cgtggaggtg caggactcca
     2821 tccaccgctg ggagcgccgg cgcacgctca acaaggcccg ggcctcccgc tcctccgtgc
     2881 agagaggacc cctggggtac agagaggaca aaggagttgt tcaagaccac gcagctcctc
     2941 actcctgtcc aagctcccag catcgggacg gggggtgaga cccgacgccg gtgacccacg
     3001 ccccctgcat ctc
//
LOCUS       XM_032620026            4194 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Ras and Rab interactor 3 (RIN3),
            transcript variant X3, mRNA.
ACCESSION   XM_032620026
VERSION     XM_032620026.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4194
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4194
                     /gene="RIN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 long SRA reads, 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747604"
     CDS             363..3368
                     /gene="RIN3"
                     /codon_start=1
                     /product="ras and Rab interactor 3 isoform X1"
                     /protein_id="XP_032475917.1"
                     /db_xref="GeneID:116747604"
                     /translation="MIRRVGAPECADPAGPIPDVGKGEGQQEEKEDGVGPRLPVTPKN
                     CLPLRGISVLEKLVKTCPVWLHLGLGRAEATRILHREAAGTFLVRRDSSLKHPVLCVH
                     FPSPNESSSAVLEYTIKEEKSILYLEGSVLVFEDIFRLIAFYCVSRDLLPFKLRLPQA
                     ILEASSFTDLKTISNLGLGFWDSSLNPRPGGGSPVGAPPASILRSSAHYENCSCEIEL
                     SIGNGHLWFVNPVFIEDCGSSLPADQLPPGSCPLPSPPASEATSPTSRWAPRRPAPPP
                     PPLPLHPPSSSRPPPPGPPLACPLPGSPSAAAPPPPHPKALPPSPPASAPRLAPHTPG
                     PAELPSQPPMTACERLPRPLAGLGPLREEEMKPGAAPSPLQSPVPPAPTKKSLPAAPP
                     RRRIAEKASLEDQSAGKADRGAAAEGDPVGLSRAFPLRLPPQGTSGSPGDRPQRTTEQ
                     GQEAVAKAGDLGSMPEPPRNIRPPPVPPPRKKRLSRQLASVLPIPLETAELSTDREAP
                     ENPRPSPPGEGQGPAPTAGTQSPHARPGARPQSTPEFKGSLASLSDSLGVPASAADQD
                     SYSTSSTEEELEQFSSPGVKKKSSMILGKARHRLSFVSFASVFSAFLSNNRKLYKKVV
                     ELAQDKASYFGSLVQDYKVYSLEMMAHQTSSMEMLQEIRTMMTQLKSYLLQSTELKAL
                     VDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHEIHRKDGSLQQLKENQLVILAT
                     TTTDLGVTTSVPEVPIMEKILQKFASMHKAYSPEKKISTLLKTCKLIYDSMALGNPGK
                     SYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIK
                     NYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFICVSYLEPEQQSRTLAS
                     RADTLAEVLCAQCAEKFEVVQPQDHRLFVLVDGRCFQLADEALPHRIKGYLLRSEPKR
                     DFHFVYRPLDGGGGSGGPPCLVVREPNFL"
     misc_feature    519..821
                     /gene="RIN3"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(573..575,627..629,705..707,711..713)
                     /gene="RIN3"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(708..710,789..791)
                     /gene="RIN3"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
     misc_feature    <1077..1991
                     /gene="RIN3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2631..2942
                     /gene="RIN3"
                     /note="Vacuolar sorting protein 9 (VPS9) domain; Region:
                     VPS9; pfam02204"
                     /db_xref="CDD:460489"
     misc_feature    3045..3308
                     /gene="RIN3"
                     /note="Ras-associating (RA) domain found in Ras and Rab
                     interactor 3 (Rin3); Region: RA_Rin3; cd16130"
                     /db_xref="CDD:340547"
ORIGIN      
        1 accccccgcc gccaggtccg gccccaaggg cgcggctgcc ggggtttccg tgtgccccag
       61 cggggctccg ggctgcgagc tgccgccgaa agacttttga caaaaaaaac ctcttgacca
      121 ccaaggccag cctcttcctg aaagccccgc tcgctccgat acaggaagta gagggagcga
      181 gcgccccaga gcgtggcggc cgcggcggct gtggcttccc gactccgcgc ggggctggcg
      241 gcggtgcccg cgcgggccct tccccagggc agcgccaggg gcatgcgggc gcccggggcc
      301 ccgcggcccg cgccgcccgg tgcctgagcc cctgcgttca ccgtcccgga gctgctggcg
      361 gcatgatccg acgggtcggg gcgcccgagt gcgcggaccc cgcgggtcct attccagatg
      421 ttggcaaagg agagggacag caagaggaga aggaagatgg cgtggggcct cgtctgccag
      481 tcactccgaa gaactgcctt cctctccggg gcatcagcgt cctggagaag ctcgtcaaga
      541 cctgcccggt gtggctgcat ctgggtctgg gccgggcaga ggcgaccagg atcctgcacc
      601 gggaggcggc cgggacgttc ctggtccgcc gggacagcag cttgaagcac ccggtgctct
      661 gtgtgcactt cccttctcca aacgagagct catccgcggt gctggaatac accattaaag
      721 aagaaaaatc aatattgtac ctggaaggct cggttcttgt gtttgaggac atcttcagac
      781 tgatcgcatt ctactgtgtc agtagagatt tactgccctt caagctgagg ctgccccagg
      841 ccatccttga ggccagcagc ttcacagacc tcaagaccat ctccaacctg ggcctgggct
      901 tctgggactc ctcgctgaac ccccggccag gaggtgggag cccagtggga gcgccccccg
      961 cctccattct caggtcatcc gcccattacg aaaactgctc gtgtgaaatc gagctgtcca
     1021 taggaaatgg ccacctgtgg tttgtgaatc cagtcttcat cgaggactgc ggcagctccc
     1081 tgccggctga ccagctgccc ccgggaagct gccccttgcc gtcgcctccc gcctccgagg
     1141 ctacctcccc cacctccagg tgggcccctc gccgcccagc tccccctccc ccgccgctcc
     1201 ctctccatcc ccccagctcc agccggcctc ctccccccgg cccccctctg gcctgccctc
     1261 tgcccggttc tccctcagcg gctgctcccc cgcctccgca tcccaaggcc cttcctccct
     1321 cacccccagc gtctgccccc cgcctggcac cccacacccc aggccccgcg gagcttccaa
     1381 gccagccacc catgacagcc tgtgagaggc tcccgcgtcc cctcgcaggc ctgggccccc
     1441 tcagggagga agagatgaag ccgggggcag cccccagccc cttgcagtcc cccgtccctc
     1501 cagcgcccac gaagaagagc ctccccgccg cccctcccag gcgccgcatc gcggagaagg
     1561 cgtccctgga ggaccagagt gcagggaagg cggacagggg ggcggcagcg gagggggacc
     1621 cggtgggtct ttccagggca ttcccgctcc gcctgcctcc ccaggggacc tccggcagcc
     1681 ctggggacag gcctcagaga accacagagc aaggccagga agcagtggcc aaagccggcg
     1741 atctgggcag catgccagag cctccgagga atattcgacc acccccagtc ccacctccca
     1801 ggaagaaacg gctctcccgg cagctggcct cggtcctccc aattcccctg gagactgccg
     1861 agctttccac ggacagggag gcccccgaga accccaggcc cagtccacct ggagaaggcc
     1921 aaggtcctgc ccccacggct ggcactcaga gcccgcatgc ccggcccggg gcccggcccc
     1981 agagcacccc ggagttcaag ggctccctgg cctccctctc ggacagcttg ggggtgcccg
     2041 cctcggccgc agaccaggac tcctactcga ccagcagcac agaggaggag ctggagcagt
     2101 tcagcagccc cggcgtcaag aagaagtcgt cgatgatcct gggcaaggcc cgccaccgcc
     2161 tgagcttcgt gagcttcgcc agcgtcttca gcgccttcct ctccaacaac cgcaagctgt
     2221 acaagaaggt ggtggagctg gcccaggaca aggcctcgta cttcggcagc ctggtgcagg
     2281 actacaaggt gtacagcctg gagatgatgg cgcaccagac ctccagtatg gagatgctgc
     2341 aggagatccg caccatgatg acccagctca agagctacct gctgcagagc accgagctca
     2401 aggccctggt ggaccccgcc ctgcactccg aggaggagct agaagccatt gtggagtctg
     2461 ccttgtacaa gtgtgtcctg aagcccctga aggaagccat caactcctgc ctgcatgaga
     2521 tccacaggaa ggacggctcg ctgcagcagc tcaaggagaa ccagctggtg atcctagcca
     2581 ccacgaccac cgacctgggc gtgaccacta gcgtgccgga ggtgcccatc atggagaaga
     2641 tcctgcagaa gtttgccagt atgcacaagg cctactcgcc cgagaagaag atctccaccc
     2701 tgctcaagac ctgtaagctc atctacgact ccatggccct tggcaaccca gggaagtcct
     2761 acggggcaga cgacttcctg ccggtgctca tgtacgtgct ggcccgcagc aatctcacgg
     2821 agatgcttct caacgtggag tacatgatgg agctcatgga ccctgccctg cagctggggg
     2881 agggttccta ctatctgacc accacctacg gggccctgga gcacatcaag aactacgaca
     2941 agatcacggt gacccggcag ctgagcgtgg aggtgcagga ctccatccac cgctgggagc
     3001 gccggcgcac gctcaacaag gcccgggcct cccgctcctc cgtgcaggac ttcatctgcg
     3061 tgtcgtacct ggagcccgag cagcaatcac ggacgctggc gtcgcgggcg gacacgttgg
     3121 ccgaggtgct gtgcgctcag tgcgcagaga agttcgaggt ggtgcagccc caggaccacc
     3181 ggctcttcgt gctggtggac gggcgctgct tccagctggc cgacgaggcg ctgccgcacc
     3241 gcatcaaggg ctacctgctg cggagcgagc ccaagcgcga cttccacttc gtgtaccggc
     3301 ccctggacgg cggcgggggc agcgggggcc cgccctgcct cgtggtgcgg gagcccaact
     3361 tcctgtgagg ccggggctgc agcgcctcca aaggcagtgt tcacccaggt ggagaagccg
     3421 tcagaagacc cggcccgcgc cctctcccca cacactcaca ctcagccaca cccacacacg
     3481 cacgcacaca ctctcccaac aggaatgccc acacatcaca cgtgctcaca acccactgag
     3541 cgcgcgtaga ccagcgtgcc acttaagcaa tgtgatcggt ggcccccagc ttgcttcctg
     3601 aaggagagtc atagccccct agaggccacg ttattcatta ggcagaaagg gaaacggctc
     3661 agagggagaa ggggctctcc agccccctga agcagagtcc aagcccggcc cccgttcaca
     3721 cacagcccct caggccagtc cctctgcccc tgccccccat gcccgccgga tcctcagtct
     3781 ttccagggta gggcttcccg tttccccagg actgtcctca ggaggagtgg cccggcccca
     3841 gctgctccca cacccctctt cccacaggat ggagctggga tgctctggac cctcccagca
     3901 cctcaggagc atctcagggt gtgtgaggag acagccctcc cccgatccct gcataagagc
     3961 ctgcacttgg ctctcagcac ccacagcccc gccgcagctc ccaagccact ccaggagcag
     4021 ccagacgtgc actgggacct ccaagtgaag ccagctccgt ggctacgtgg gtgagcgcag
     4081 cctcggccac gggggacatt gacagggccg ttgccttggg gcgcacccca gggctgtggc
     4141 acctgtggca agaggcaccg tgtggggagt gtttaataaa agcccttttg aaaa
//
LOCUS       XM_032620035            6804 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus Ras and Rab interactor 3 (RIN3),
            transcript variant X4, mRNA.
ACCESSION   XM_032620035
VERSION     XM_032620035.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6804
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6804
                     /gene="RIN3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747604"
     CDS             202..2790
                     /gene="RIN3"
                     /codon_start=1
                     /product="ras and Rab interactor 3 isoform X3"
                     /protein_id="XP_032475926.1"
                     /db_xref="GeneID:116747604"
                     /translation="MIRRVGAPECADPAGPIPDVGKGEGQQEEKEDGVGPRLPVTPKN
                     CLPLRGISVLEKLVKTCPVWLHLGLGRAEATRILHREAAGTFLVRRDSSLKHPVLCVH
                     FPSPNESSSAVLEYTIKEEKSILYLEGSVLVFEDIFRLIAFYCVSRDLLPFKLRLPQA
                     ILEASSFTDLKTISNLGLGFWDSSLNPRPGGGSPVGAPPASILRSSAHYENCSCEIEL
                     SIGNGHLWFVNPVFIEDCGSSLPADQLPPGSCPLPSPPASEATSPTSRWAPRRPAPPP
                     PPLPLHPPSSSRPPPPGPPLACPLPGSPSAAAPPPPHPKALPPSPPASAPRLAPHTPG
                     PAELPSQPPMTACERLPRPLAGLGPLREEEMKPGAAPSPLQSPVPPAPTKKSLPAAPP
                     RRRIAEKASLEDQSAGKADRGAAAEGDPVGLSRAFPLRLPPQGTSGSPGDRPQRTTEQ
                     GQEAVAKAGDLGSMPEPPRNIRPPPVPPPRKKRLSRQLASVLPIPLETAELSTDREAP
                     ENPRPSPPGEGQGPAPTAGTQSPHARPGARPQSTPEFKGSLASLSDSLGVPASAADQD
                     SYSTSSTEEELEQFSSPGVKKKSSMILGKARHRLSFVSFASVFSAFLSNNRKLYKKVV
                     ELAQDKASYFGSLVQDYKVYSLEMMAHQTSSMEMLQEIRTMMTQLKSYLLQSTELKAL
                     VDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHEIHRKDGSLQQLKENQLVILAT
                     TTTDLGVTTSVPEVPIMEKILQKFASMHKAYSPEKKISTLLKTCKLIYDSMALGNPGA
                     GRQEPLLIQKPAPGRETLSPEIQDGIKAPCEDSPPGTDPPGTDGLLGESQTVGSPPTA
                     EGALAL"
     misc_feature    358..660
                     /gene="RIN3"
                     /note="Src homology 2 (SH2) domain; Region: SH2; cl15255"
                     /db_xref="CDD:472789"
     misc_feature    order(412..414,466..468,544..546,550..552)
                     /gene="RIN3"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]; other site"
                     /db_xref="CDD:198173"
     misc_feature    order(547..549,628..630)
                     /gene="RIN3"
                     /note="hydrophobic binding pocket [polypeptide binding];
                     other site"
                     /db_xref="CDD:198173"
     misc_feature    <916..1830
                     /gene="RIN3"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    2470..>2595
                     /gene="RIN3"
                     /note="Vacuolar sorting protein 9 (VPS9) domain; Region:
                     VPS9; cl19569"
                     /db_xref="CDD:473191"
ORIGIN      
        1 caggaagtag agggagcgag cgccccagag cgtggcggcc gcggcggctg tggcttcccg
       61 actccgcgcg gggctggcgg cggtgcccgc gcgggccctt ccccagggca gcgccagggg
      121 catgcgggcg cccggggccc cgcggcccgc gccgcccggt gcctgagccc ctgcgttcac
      181 cgtcccggag ctgctggcgg catgatccga cgggtcgggg cgcccgagtg cgcggacccc
      241 gcgggtccta ttccagatgt tggcaaagga gagggacagc aagaggagaa ggaagatggc
      301 gtggggcctc gtctgccagt cactccgaag aactgccttc ctctccgggg catcagcgtc
      361 ctggagaagc tcgtcaagac ctgcccggtg tggctgcatc tgggtctggg ccgggcagag
      421 gcgaccagga tcctgcaccg ggaggcggcc gggacgttcc tggtccgccg ggacagcagc
      481 ttgaagcacc cggtgctctg tgtgcacttc ccttctccaa acgagagctc atccgcggtg
      541 ctggaataca ccattaaaga agaaaaatca atattgtacc tggaaggctc ggttcttgtg
      601 tttgaggaca tcttcagact gatcgcattc tactgtgtca gtagagattt actgcccttc
      661 aagctgaggc tgccccaggc catccttgag gccagcagct tcacagacct caagaccatc
      721 tccaacctgg gcctgggctt ctgggactcc tcgctgaacc cccggccagg aggtgggagc
      781 ccagtgggag cgccccccgc ctccattctc aggtcatccg cccattacga aaactgctcg
      841 tgtgaaatcg agctgtccat aggaaatggc cacctgtggt ttgtgaatcc agtcttcatc
      901 gaggactgcg gcagctccct gccggctgac cagctgcccc cgggaagctg ccccttgccg
      961 tcgcctcccg cctccgaggc tacctccccc acctccaggt gggcccctcg ccgcccagct
     1021 ccccctcccc cgccgctccc tctccatccc cccagctcca gccggcctcc tccccccggc
     1081 ccccctctgg cctgccctct gcccggttct ccctcagcgg ctgctccccc gcctccgcat
     1141 cccaaggccc ttcctccctc acccccagcg tctgcccccc gcctggcacc ccacacccca
     1201 ggccccgcgg agcttccaag ccagccaccc atgacagcct gtgagaggct cccgcgtccc
     1261 ctcgcaggcc tgggccccct cagggaggaa gagatgaagc cgggggcagc ccccagcccc
     1321 ttgcagtccc ccgtccctcc agcgcccacg aagaagagcc tccccgccgc ccctcccagg
     1381 cgccgcatcg cggagaaggc gtccctggag gaccagagtg cagggaaggc ggacaggggg
     1441 gcggcagcgg agggggaccc ggtgggtctt tccagggcat tcccgctccg cctgcctccc
     1501 caggggacct ccggcagccc tggggacagg cctcagagaa ccacagagca aggccaggaa
     1561 gcagtggcca aagccggcga tctgggcagc atgccagagc ctccgaggaa tattcgacca
     1621 cccccagtcc cacctcccag gaagaaacgg ctctcccggc agctggcctc ggtcctccca
     1681 attcccctgg agactgccga gctttccacg gacagggagg cccccgagaa ccccaggccc
     1741 agtccacctg gagaaggcca aggtcctgcc cccacggctg gcactcagag cccgcatgcc
     1801 cggcccgggg cccggcccca gagcaccccg gagttcaagg gctccctggc ctccctctcg
     1861 gacagcttgg gggtgcccgc ctcggccgca gaccaggact cctactcgac cagcagcaca
     1921 gaggaggagc tggagcagtt cagcagcccc ggcgtcaaga agaagtcgtc gatgatcctg
     1981 ggcaaggccc gccaccgcct gagcttcgtg agcttcgcca gcgtcttcag cgccttcctc
     2041 tccaacaacc gcaagctgta caagaaggtg gtggagctgg cccaggacaa ggcctcgtac
     2101 ttcggcagcc tggtgcagga ctacaaggtg tacagcctgg agatgatggc gcaccagacc
     2161 tccagtatgg agatgctgca ggagatccgc accatgatga cccagctcaa gagctacctg
     2221 ctgcagagca ccgagctcaa ggccctggtg gaccccgccc tgcactccga ggaggagcta
     2281 gaagccattg tggagtctgc cttgtacaag tgtgtcctga agcccctgaa ggaagccatc
     2341 aactcctgcc tgcatgagat ccacaggaag gacggctcgc tgcagcagct caaggagaac
     2401 cagctggtga tcctagccac cacgaccacc gacctgggcg tgaccactag cgtgccggag
     2461 gtgcccatca tggagaagat cctgcagaag tttgccagta tgcacaaggc ctactcgccc
     2521 gagaagaaga tctccaccct gctcaagacc tgtaagctca tctacgactc catggccctt
     2581 ggcaacccag gggcagggag acaggaacct ctgctgattc agaagccagc tccaggcagg
     2641 gagactctga gcccagaaat tcaggacggg atcaaggctc cgtgtgaaga ttccccacca
     2701 ggaacagacc caccaggaac agatgggctt cttggcgaga gccagacagt gggttcccct
     2761 cccactgctg agggagcact ggccttgtga acgcagtggc tcccgacctt acctgtgccc
     2821 cgagcgggcc tgggctgccc cactcggaac ctcagcctct tcccctgaga ggaagcagtt
     2881 ctgccaagaa gagcaggagt ttgagggttc attcaaggac atgggtttga acccagcttc
     2941 ggtgctgtag ccttagactt gaatctcatg gggcctctgc ttgtgtgtaa aatggggatg
     3001 ataagaccta ccttgcaggt tgccgtacag ggtagaggtg gggggagcac atagaaaaca
     3061 cctgggctgc gtggccccaa ggaggtacta atcttccaga gcctctggtt tctagcccca
     3121 ttcaaaaaga ggctgggaac acctctctcg gggctgtggc gaggctcaga tgcgagccgg
     3181 tatgtgggtg aatgtccagt agatgtgaag atgcaggaat ggctgctcca aatgtggagg
     3241 acgcagccac tcagtggttt ccaagctggg ttccaggagg caccccaggg accaccagag
     3301 ggacacaaga ctgggcttga cgccagacag ccctgcttgt ccctgtttta cacacagggt
     3361 tccacctggg attttgtttg aaataaacag ttctgctgct aaattttttg gtcttttgag
     3421 aaaacctttc atttggaaaa catttcagac ttcaaaaact tcaagaatag gaatagtaca
     3481 ttaagatagg aacatccact tagccctcgt ggactgttaa tatcttacgt catttgcttt
     3541 atcatttata ctctctctat gcatatgtaa ttttttcctg aatcatataa gggcaagtta
     3601 catacatctt ggccctttac ccctaaatac ttctgagaat agggatattc cctcacataa
     3661 ccacattaaa gtcgtctgct tcgtaaactt acatcaataa aatatttttc tccactgcac
     3721 tgcctgtatt ccaggtggtc actgatctaa caaggctctt attagcattt cctcctccag
     3781 ttcagggtcc aatccaaggt caggtaccgc atttagttgc ctcctttaat ctggaacgtt
     3841 acagcctttc tttgtctttt atgacattgg catctttaaa ggatacaggt tttcctccct
     3901 gccccctcca catcttttct ttgtcacgaa agttcctcat tttgtgtttg tcagatgttt
     3961 ccgcatgatt agactgaggt taggcatttt cagccagatc tggactgact cttaaattct
     4021 cttctgactt tgacatgaag tgaccttagg accaggtctt ctgctcacaa cctctgccca
     4081 ccgggccccg ctcccctccc gcagcctcac ctcctcaccc accagacgct tccagagctt
     4141 tgctactctg agtgtggtcc ccagccccgc cgccccaccc cccaccccca tggaagccct
     4201 gggaggcatg cacgatcccg tggagggcac agcgccggct tggctgccgc cggcctccac
     4261 cactgacacc cactctacgc agaaaactgc ccttcccccc acccgccctg ccccagcccc
     4321 tcaagtccag gaaagaagct ccaccggccc atctcttcca ttgcacgatg ctggcaatag
     4381 taactggtat ccacacggcc tggctgctgg cgagaccggc tgggacagtg ggaaaggcag
     4441 aacttagaga cacaaagcct gaggtaacgg ccaggctgtc ttttccagaa aggtagttgc
     4501 tgttaatgcc catgatacgg atgggccagg attcaaagct aggatatcct cactccagag
     4561 cctgtgcttc catcgctgta ccaagaagcc cacctgggaa cggatcccag agctcccgaa
     4621 tcctgatcaa gtacttcctc cactatagca ggtttagggg cccatgtcag gtagggtggg
     4681 gagcgcacag agacaatggc tttggataga cctggccctc tgtcccgcag ccaggagcag
     4741 actggatgag cagactgcat gaggctcggt gagagcagtt agaacttcta gaattatctg
     4801 tcccattact ttgacaggac aagctgttcc cacctcttca gtccctaaga cccagcattc
     4861 agggctggcc ctgctattgg ggagaaatag cttcaaaccc aagaactcct ccgtaagata
     4921 ggagctgggg gaaggaaagg agaatgcagt gcacacaaat gtgggactct ttcttaaaag
     4981 aataaagagc aggcaacatc cgagagggca gtgaaggcca gcgggctgct ttcttctcct
     5041 ccttcgaggg tctgtagctg gctcgggcag ggcagaggcg ggggttggga gaccccaggt
     5101 gcagggatcg acaggcctat gacattgact gagggtagac aggacagaga gggaggtcag
     5161 tctgttggtt tctaaaaatc aatgttaaaa aatctaaact gatttctgat gacaaaagtc
     5221 gctaatgttt attgtagaaa aggacgatta gtattgtggt agatttctat ctggtctctt
     5281 tgaagtagat atagataggt aggtaaatag ataattagtc gaggaaatac tttctgctat
     5341 aacagataaa ccctgcaatc tctaactcag tacaaattta tttctcacgc atggaagtcc
     5401 agttggttgg aggagggctg gggagtgggg actgggctct gctccatata gccatccagg
     5461 gatccaggct gagggaggct ttctaagtcc ccctgggcat cgacatgcag gtgacacaga
     5521 gagacagaca gagaacatat gtgccaggcc tggaaacaaa gcataacctt gtttttatgc
     5581 ccacaacaga aatgggttca ggacctctaa gatgtcatgt tctgaggatt agaagccacg
     5641 ttaccctcct gtcttgcata ataaccatgt gtaacattgc tcaaaatcca ataaacagaa
     5701 ggcaccatgt tatccctttc tatctgtctt gtcactgaaa catcacaacc acccccacaa
     5761 ggtgtgggca ctgttgttat ccccatttta cagccaagga aactgaggct cggcaaggtg
     5821 aagcagcaag ctcagggtca cacctgagca ggtgagtggg ccctgggact tggatccagt
     5881 tcctgtgctg gactgctgtg ctctcctgcc tctccagggc gccctggggt cggagatgac
     5941 ctcagggagg ccagtccaat cacagtggct tcatgcgttt tccagccagg ctgggacttt
     6001 tggcctctgg tctctgcacc cacagcctgt gtggctgact ggcttgtggg ctgagctctc
     6061 gaagaggaac ccagggagct ggagtgattt cctcagggat ccactgttgc tcaaagcaga
     6121 actgagactg aagcagcatc tgcaaaaagc acaaacaacc caacagggtc gctttgggaa
     6181 gctcagtggg agagaggctg gcctctcgtc tcacatcagc cacagactac agggaacctc
     6241 cctccctcgg gctccagctc tttcatccgt gcagctggga gttcaaacta gaccagtggt
     6301 tttccaactg gtcccggaga actctcgagg gactcgaggg actggggaca tcttgcaagg
     6361 ggaagggggg aggaggggaa acagcaaacc agccctgctg tccgactcga tcaaccagag
     6421 cagccaagtt ctgtataaga tctacccctt aatgaaagga ttccactgca aaaggaaatt
     6481 taaaacctcc tgttccagag gctttctact tcctgccatc ctgtgttttt atcagataag
     6541 ttcattcatt caacagttca acaaacattt attgacagta tggatgttaa caggaaaacc
     6601 cagcccctgt ttttaggatg gtcacagttc aagtggaaaa acagagcatt caacaggcga
     6661 caaccatgca gtgagataaa tgatattcat tcattcattt agcaagtata tttatttatt
     6721 tgttttttta gatgttggga gtaggagttt attaattaat ttatttttgc tgtgttgggt
     6781 cttcgtttct gtgtgagggc tttc
//
LOCUS       XM_032620049            1887 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 24 member 4
            (SLC24A4), mRNA.
ACCESSION   XM_032620049
VERSION     XM_032620049.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1887
                     /gene="SLC24A4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747620"
     CDS             1..1857
                     /gene="SLC24A4"
                     /codon_start=1
                     /product="sodium/potassium/calcium exchanger 4"
                     /protein_id="XP_032475940.1"
                     /db_xref="GeneID:116747620"
                     /translation="MALRGPPRPRKVRRRREMLWQQVGFVCAILALVCCASGLFGRWG
                     HKTASAGKHVLPDTWRSRRLMAPVNGTQTAKNCTDPAIHEFPADLFSNKERQHGAVLL
                     HILGALYMFYALAIVCDEFFVPSLEKICEKLHLSEDVAGATFMAAGSSTPELFASVIG
                     VFITHGDVGVGTIVGSAVFNILCIIGVCGLSAGQVIRLTWWAVCRDSVYYTLSVVVLI
                     AFIYDEEIVWWEGLVLIVLYVFYILIMKYNVKMQAFFTVRQKTIANGNTVNSELEDGN
                     DYCDSSSDDPSMPLLGQVKEEPQYSKNPVVMVDEVMSSSPPKFTFPEAGLRVMITNKF
                     GPRTRLRMASRIIINERQRLINSANGVSSKPLQNGRHKSLENGNVPVENPAELQQERE
                     QPPPPPEPELVEAALLSPFSMPEARGDKAKWVLTWPLIFLLCVTIPNCSKPRWEKFFM
                     LTFALATLWIAVFSYLMVWLVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVTRQ
                     GLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVINYGSTVKINSRGLVYSVVLLLGSVA
                     LTVLGIHLNKWRLDRKLGIYVLVLYAIFLCFSIMIEFNVFTFVNLPMCREDD"
     misc_feature    <238..1806
                     /gene="SLC24A4"
                     /note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904;
                     TIGR00927"
                     /db_xref="CDD:273344"
ORIGIN      
        1 atggcgctcc gcggcccccc gcggccgcgc aaagttcgca ggagacgaga gatgctgtgg
       61 cagcaagttg gcttcgtgtg cgcgattttg gcgctggtgt gctgtgcgtc tggcctcttt
      121 ggcagatggg ggcacaaaac agcttctgct ggcaaacatg ttttaccaga cacatggaga
      181 agtagaaggc tgatggcacc agtgaatggg actcagacag ctaagaactg cacagatccg
      241 gcgattcatg agttccccgc agacctgttc tccaataaag agcgacagca tggagccgtc
      301 ctgctacata tccttggtgc tctgtacatg ttctacgcct tggccatagt gtgcgatgag
      361 ttcttcgttc cgtctctaga gaagatctgc gagaaactcc atctgagcga agatgtggct
      421 ggagccacct tcatggctgc aggaagctcg acgccagagc tgtttgcctc tgtgattggt
      481 gtgttcatca ctcacggaga tgtcggggtt gggaccatcg tgggctctgc tgtgttcaac
      541 atcctgtgta taatcggagt ttgtggatta tccgcagggc aggtcatccg tctgacatgg
      601 tgggccgtgt gccgagactc tgtgtactac accctctctg tcgttgtgct cattgccttc
      661 atatatgatg aagaaattgt gtggtgggaa ggcctggtgc tcatcgtctt gtacgtgttt
      721 tacattctga tcatgaagta caatgtgaag atgcaggcct ttttcacagt cagacaaaag
      781 accattgcaa atggcaacac ggtcaacagt gagctggagg atggtaatga ttactgtgat
      841 agtagctctg atgacccttc catgccattg ctggggcaag tgaaggagga gccgcagtac
      901 agcaaaaacc cagtggtgat ggtggatgag gtcatgagct ccagccctcc caagttcacc
      961 ttcccagaag caggcttacg cgtaatgatc accaataagt ttgggcccag gactcgtctg
     1021 cgcatggcca gcaggatcat aattaacgag aggcagaggc tgatcaactc ggcaaacggt
     1081 gtgagcagca agccacttca gaacgggaga cacaagagcc tcgagaacgg gaacgttcct
     1141 gtggaaaacc ctgcagagct gcaacaggag cgagagcagc cgccgccacc cccagagcca
     1201 gagctggtcg aggccgctct cctgtccccc ttctccatgc ccgaggcaag aggggacaaa
     1261 gccaagtggg tgttgacctg gccactcatc ttcctcctgt gcgtcaccat ccccaactgc
     1321 agcaagcccc gctgggagaa gttcttcatg ctcaccttcg cccttgccac gctgtggatc
     1381 gctgtcttct cctacctgat ggtgtggctg gtgacaatta ttggatacac ccttggaatc
     1441 cctgatgtca tcatgggcat tactttcctt gcagcaggca caagcgttcc agactgcatg
     1501 gccagcttga ttgtgacgag acaaggcctt ggtgacatgg cggtctctaa caccatagga
     1561 agcaacgtgt ttgacatcct cgtgggactc ggcgtaccgt gggggctgca gaccatggtt
     1621 attaattatg gatccacggt gaagatcaac agccggggtc tggtctactc cgtggtgttg
     1681 ctgctgggct ccgttgctct caccgtcctc ggcatccatc tgaacaaatg gaggctggac
     1741 cggaagctgg ggatctacgt gctggttctc tacgccatct tcttgtgctt ctccataatg
     1801 atagagttta acgtctttac ctttgtcaac ttgccgatgt gccgagaaga cgattaaaac
     1861 ggagccgctg ccccccgccc gggagct
//
LOCUS       XM_032620062            3184 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus interferon regulatory factor 2 binding
            protein like (IRF2BPL), mRNA.
ACCESSION   XM_032620062
VERSION     XM_032620062.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3184
                     /gene="IRF2BPL"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 15 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747627"
     CDS             34..2367
                     /gene="IRF2BPL"
                     /codon_start=1
                     /product="probable E3 ubiquitin-protein ligase IRF2BPL"
                     /protein_id="XP_032475953.1"
                     /db_xref="GeneID:116747627"
                     /translation="MSAAQVSSSRRQSCYLCDLPRMPWAMIWDFSEPVCRGCVNYEGA
                     DRIEFVIETARQLKRAHGCFQDGRSPGPPPPVGVKTVALSAKEAAAAAAAAAAAAQQQ
                     QQQQQQLNHVDGSSKPAVLAAPSGLERYGLSAAAAAAAAAAAAVEQRSRFEYPPPPVS
                     LGSSSHSARLPNGLGGPNGFPKPTPEEGPPELNRQSPNSSSAAASVASRRGTHGGLVT
                     GLPNPGGGGGPQLTVPPNLLPQTLLNGPASAPVLPPPPPHGLGSRGPPTPAPPGAPGG
                     PACLGGGPGVSAASSSSSSSTSSSVAEVGGGAGGKRPGSVSSTDQERELKEKQRNAEA
                     LAELSESLRNRAEEWANKPKMVRDTLLTLAGCTPYEVRFKKDHSLLGRVFAFDAVSKP
                     GMDYELKLFIEYPTGSGNVYSSASGVAKQMYQDCMKDFGRGLSSGFKYLEYEKKHGSG
                     DWRLLGDLLPEAVRFFKEGVPGADMLPQPYLDASCPMLPTALVSLSRAPSAPPGTGAL
                     PPAAPSGRGAAASLRKRKASPEPPDSAEGALKLGEEQQRQQWMANQSEALKLTMSAGG
                     FAAPGHAAGGPPPPPPPLGPHSNRTTPPESAPQNGPSPMAALMSVADTLGTAHSPKDG
                     SSVHSTTASARRNSSSPVSPASVPGQRRLASRNGDLNLQVAPPPPSTHPGMDQVHPQN
                     IPDSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCP
                     SGEKCPLVGSNVPWAFMQGEIATILAGDVKVKKERDP"
     misc_feature    61..216
                     /gene="IRF2BPL"
                     /note="Interferon regulatory factor 2-binding protein zinc
                     finger; Region: IRF-2BP1_2; pfam11261"
                     /db_xref="CDD:463250"
     misc_feature    2098..2295
                     /gene="IRF2BPL"
                     /note="variant of RING finger, HC subclass, found in
                     interferon regulatory factor 2-binding protein-like
                     (IRF-2BPL); Region: vRING-HC_IRF2BPL; cd16717"
                     /db_xref="CDD:438377"
ORIGIN      
        1 gggcgggggc ctaccttacc gagggccggc atcatgtcgg cggcgcaggt gtcctcgtcc
       61 cggagacaat cttgctacct gtgcgacctg ccccgcatgc cctgggccat gatctgggac
      121 ttctcggaac ccgtatgccg cggttgcgtc aactacgagg gcgcggatcg catcgagttt
      181 gtgatcgaga ccgcgcgtca gctgaagcgg gcgcacggct gcttccagga cggccgctcc
      241 cccgggccgc cgccgcccgt cggggtcaag acggtggccc tgtcggctaa ggaggcggcg
      301 gcggcggcgg cggcggcagc ggccgccgca cagcagcagc aacagcagca acaacagctc
      361 aaccacgtcg atggttccag caagcctgcg gtgctggcgg ccccgtccgg cctggagcgc
      421 tatggtctga gcgcagccgc tgctgctgcc gccgccgccg ccgccgcggt ggaacagcgc
      481 agccgcttcg aatatcctcc accaccggtg agcctgggaa gcagcagcca ctccgcgcgg
      541 ctgcccaacg gtctgggggg ccccaacggc ttccccaagc ccacaccgga ggagggaccc
      601 ccggagctga accgccagag ccccaactcg tcttcagcgg cggcgtcggt ggcgtctcgg
      661 cgcgggacgc atggtggact agtgacaggg ctgcccaacc cggggggtgg cggaggcccc
      721 cagcttaccg tgccccctaa cctgttgccg cagacgctgc ttaacggccc ggccagcgcc
      781 cccgtgctgc ccccaccgcc gcctcatggt ctgggcagcc gtgggccccc gacgcccgcg
      841 ccccccgggg cccccggggg cccagcttgt ctcgggggcg gcccaggcgt atcggccgcg
      901 tcgtcctcct cgtcatcttc gacctcgtcg tcggtggccg aggtgggcgg gggtgctggt
      961 ggcaaaaggc ccggctccgt gtcgagcact gaccaggagc gcgagctgaa ggagaagcag
     1021 cgtaacgccg aagccctggc tgagctaagt gagagcctac gcaaccgcgc ggaggagtgg
     1081 gccaacaagc ccaagatggt ccgcgacacg ctgctcacgc tggccggctg tacgccttac
     1141 gaggtgcgtt ttaagaagga ccactcgctg ctgggccgcg tcttcgcctt cgacgccgtc
     1201 tccaagcctg gtatggacta cgagttgaag ctgtttatag agtaccccac gggctcgggc
     1261 aacgtgtatt ctagcgcatc tggtgtggcc aagcagatgt accaggactg tatgaaggac
     1321 ttcggtcggg gtctctcttc cggcttcaag tatctggagt atgagaagaa acacggctcc
     1381 ggggactggc gtctacttgg agacctgctg cccgaggccg tgcgcttctt caaggagggc
     1441 gtgcccggcg ccgacatgct gccccagccc tacctggacg ccagctgccc catgctgccc
     1501 acggctctgg tgagtctaag ccgcgcccct agcgcgcccc cggggaccgg ggccctgccg
     1561 cccgccgccc cctcgggccg gggcgcagct gccagcctgc gcaagagaaa ggcgtccccc
     1621 gagcccccgg actccgccga gggcgcgctg aagctgggcg aggagcagca gaggcagcag
     1681 tggatggcga accagagcga ggcactaaag cttaccatgt cggccggagg ctttgcagcg
     1741 ccggggcatg cggcaggggg tccgcctccg ccgcccccac ccctgggacc ccattccaac
     1801 cggaccaccc cgcccgagtc agcccctcag aacggtccgt cgcccatggc cgccctcatg
     1861 tcggtggcag acacactggg cacggcgcac tcgcctaagg atggcagttc tgtgcactcc
     1921 accactgcgt ctgcacggcg caacagcagc agcccggtgt cgccggcctc cgtacccggg
     1981 cagcgccgct tggcatcacg gaacggggac ctgaatttac aggtggcgcc cccgccgcct
     2041 agcacccacc cgggcatgga ccaagtgcac ccccaaaaca ttccggattc ccctatggcc
     2101 aacagcgggc ccctttgctg taccatttgc cacgaacgtt tggaggacac gcatttcgtt
     2161 cagtgcccct ctgttcccag ccacaaattc tgcttccctt gctctagaga gagtatcaag
     2221 gcccaggggg cgaccggcga ggtgtactgc cccagcggag agaaatgccc cctggttggg
     2281 tcgaatgtac cttgggcctt catgcagggc gaaatcgcga cgatcttagc tggggatgtt
     2341 aaagtgaaaa aggagagaga cccttgaacc acaagacagc cacttcctta gccccagacc
     2401 agctcctctc ccgtccagag ggcccctccc ccacccacat cgaccctctc ttccctcact
     2461 cccaaggtgt agaattgtga atataacaaa ctgcaaaaag ttagtcttat gtatagacat
     2521 tattttcgtc gtatgtttct atattttgaa acaaaggtat gtaacttctt catttgaagg
     2581 ataagctggt ttgtgttaag cagtataata ttggtttcgt catctgcatc atattcctta
     2641 gcatttattg gtggcagagt gtttgcctag gtacagaatt aatagccttt agcaacgact
     2701 gctgctggtg tgtatttttg taattgttat gcactcactg aaagaaagaa aaacacaaaa
     2761 gaaaatgact ttttttttgc caaggccagt gttgctgcct aaaaaaaaaa aaaatcatgc
     2821 tataaaatgg tgagagcttc atttctgaac agccccaagt gttgaagtct tcactttatt
     2881 ttgttttgtt tttgtttcct ttgcaaaatg gtaagggggg tgttggggtg ggtgggtgtt
     2941 ttttgttgca agtttgtgag ggaaaacgtt ttggtttgtt tctactgacc tgaacgtgtt
     3001 ggatcttcac gtgttgtttt gtttttgctt tattgatgca cggatgcttt tgaacagtag
     3061 agcgaaatgc tagacatgga gaatctgctc tgtttgtcct ttatacattt ctgtagttaa
     3121 cagaacactg taatgtgcct tggagcttag taacttgtaa taaattcaat tgatattaat
     3181 tctg
//
LOCUS       XM_032620075            4921 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X1, mRNA.
ACCESSION   XM_032620075
VERSION     XM_032620075.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4921
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4921
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116747631"
     CDS             1041..2240
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X1"
                     /protein_id="XP_032475966.1"
                     /db_xref="GeneID:116747631"
                     /translation="MERKNPSREGSRRLSAKLSKGPEMKKVSRQLGMAAAESDKDSGF
                     SDGSSECLSSAEQMESEDMLSALGWSREDRPRPSAKPASGAFPTLAPMVVMKNVLVKQ
                     GSSSSQLQSWSVQPSFEVISAQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSY
                     TKIAPHPGKRGLSLSPEERGEGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPP
                     STKLAEDSALQGVPCLVAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGM
                     ESNSPLSPLSASYSSPLWAAEHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITL
                     KTKELIRQNQATQVELDQLKEQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEA
                     FSDQPDI"
     misc_feature    1152..2168
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 ccgtacaaca tggcggctgg gcctggagaa ccaaccatag agacgcccac cttccgcgga
       61 gagcgcgccg acctcttaag gacgcccgcg cctccctgat aggcgtgccg acgtcatctt
      121 ccggcggaga cgaaacagcg ggcgccgcca agggtccttc taggagaaca gcgagcagtc
      181 tcggtggtgc cgggtcgtcc gagccgtgtc acgtggctgg cgaaagccgt cgcggaggct
      241 gggggggagg agaaatgggc gggaggactg ggggatagct tgagacccga cgacaacggg
      301 gttgtcatgg agccgcgggg ccgggctcgc gcatgcgcca ctctactcgc gggtcgtccg
      361 gtcgcggagc agcgacctcg gtcctagcaa ttactcatgg ctttctgggt ggtaaggtct
      421 tgattttcta tggccttgtc gctttactgt atttaagcct ctgcttgggc tttcacctca
      481 cacctttgtt catgcatgcc tgttaaacac atgacacatt ttaaaaagaa cttgagctct
      541 caggaaagtt gccaagtatc tataaaagga gagatctgtg agcagcattt cagatccttc
      601 ccttgtacac cttgggtctc ctttttatca taggcctaaa tctccataga gattgtttgt
      661 ggattagacc aacctctaat ttggttgctg gatttacccc tgaggtttca gcttagagta
      721 aggggtggat gagatacctg tttcctgcag gagaccagac ctggccgtga ggtgaccgtg
      781 gtgtttggaa atgcagactc ttgaccttca agctgttcag tatccttaca gctggcatcc
      841 cttggcgatt cagagggcct tgttaaaata tcttgaaggg ctcattgctc tcatactttg
      901 cactgttagc cgagttctgg atctgctttg gactagctgt gtatcactgg atcaaatcta
      961 ggcttctttc caggaagtgg acgaccaggg cagtccagat gaaaagagta ctgatgaatg
     1021 cacttccagc ccagtaaaac atggagagga agaacccatc cagagagggc tctagaaggc
     1081 tctcagccaa actgagcaaa ggcccagaga tgaaaaaagt gtctcgtcaa ctcggcatgg
     1141 cagctgctga gtcagataag gactctggat tttcagatgg gagctctgaa tgcctgagct
     1201 cggcagagca gatggagtct gaggacatgc tgagcgcctt aggctggagc cgagaagaca
     1261 ggccaaggcc gagcgccaag cctgcgagcg gtgccttccc aacgctggcc cccatggttg
     1321 tcatgaagaa cgtgctggtc aaacagggca gcagctcatc ccagctccag tcgtggtctg
     1381 tgcagccctc ctttgaagtg atctcagcac agccccagct cctattcctt catccacctg
     1441 taccgtctcc tgtcagccca tgtcacgctg gtgagaaaaa gtcggactcc aggaactact
     1501 tgcccattct caattcttac accaaaatag ccccacaccc aggcaaaagg ggcctctccc
     1561 tcagcccaga agaaagagga gaaggtggaa tgcagaagaa gatctgtact gagagacttg
     1621 ggccaagcct gtcttctagt gagccgacca agactggtgc tggcccaccc gggcccctga
     1681 ctccagcgcc ccccagcacc aagcttgccg aggactcagc tcttcagggt gtgccctgcc
     1741 tggtggcagg tgggagtcca cagacgcttc agccagtgtc cagcagccat gtggctaaag
     1801 ctcccagcct gacctttgct tcccccgcca gccctgtctg tgcgtcagac agtaccctgc
     1861 acgggatgga gagcaactcc ccgctgtccc cactgtcagc tagttacagc tcccctctgt
     1921 gggctgcaga gcacctctgc cgcagcccag atagcttttc agagcagcgg cagagcaagc
     1981 acaggcgctt tcagaatacc ctagtagtcc tacacaaatc tggtttgctg gagatcactt
     2041 tgaaaaccaa ggagttgatt cgtcagaacc aggcaactca ggtggaacta gaccagctaa
     2101 aggagcagac ccggctattt atcgaggccg ccaagagcag ggctcctcag gcttgggcca
     2161 agctgcaggc gtctttaaca tcagggtcag gtcatcctgg cagtgaccta gaagcgttct
     2221 ccgatcagcc agacatataa catagaaggc atattttcct gttacttgag tggttctttt
     2281 taactctttt accgttatct gctcctgttt cccaaagctt atgtaagagc tttcctttta
     2341 aacttaaact gttcagcggt tcacttacga agccacatgc cgatacctgg ctgctgtctt
     2401 aacctgtggt ctgtgcacag tttacctttg tctccgttcc actgaggacc tcagatttgg
     2461 gtgtcctcga gtccctcttc cttagcctgc aggcacttcg atggatcacg gggcaaagcg
     2521 ggaaagatgc ttgtgtgggg cccctctagc tgtcacttcc caccatccca ctcactaacc
     2581 gtgatcaggg atgcagtgac gcagacaagc atacagagtg acacctgtca agccagggag
     2641 taggtgacat aaggagcccc ccgtggatct tcccttgaag gtcttagtca cagaggaaaa
     2701 tatgagagga gggtgtttcc attttacgag gcattgtgcc atttgggaga aacctaaaac
     2761 gctctgggca cacattggtc cttggatgca agcacttaat cacttaaagc tttgtttctt
     2821 taaactcgaa agtcgagggg aaggggtagt accgttaact cgtacacttt aatcataagc
     2881 cagatttctg tgaaactggt aggtgaaata tttcagattt gtaaagtatg gaatggattt
     2941 aggaccatct ggagctacag ttgatgaact gcttttttga ctcagagtct gaagaaggga
     3001 gaaatggcta gcatctcttg gttgagagct ggaagattct gataatttat gcttttttct
     3061 ctctctgtct cttcttttga aacaatgcaa aagaagattt tcttatatgt gaaaatccta
     3121 aaagagagct tcatggttcc cgattgtgta atacaagtca gccctctgct accatcattt
     3181 ttcccccctt tgtttttaca aaagaggaaa gaaatgatta ttaagcttga aaaactttga
     3241 attaaaatca tcataaaatc atcataacat cataatgtta tgacattaag tccacaaaaa
     3301 attggaaaac gtcatccatt ttctttccac atccagagtt ttcatttgtc ttacgtcacg
     3361 gtgacgtgga gcagtcttct gtgtttcttt cgtgcattgg atttggctgc aaagccaaag
     3421 gtgtagtggg ttatgtgaag tccgtctaga agtggagagc gttatgagaa cttgcagatg
     3481 atacacaccc tttcagcctc attgtaaact agatttctaa gtcgtaaagt tgccagcttt
     3541 ttatcctccc atttaaaaat ttcatcctct tgaaaatctt tgtaccgatt actttagtaa
     3601 gaaattctgt gtgaccaact tcatcttttc tgcaaggaaa atgttcttga agttctacca
     3661 aggccagaag ctaatgctca tgcttgctgg gtagttgtaa ctctgaacat agttttaaaa
     3721 ttacaaggct tcagattgcc tgcattttgt tctcaaacat gcacaattta gatacgacca
     3781 atttagaagt aaacaactca gtgaaacctt tagactctcc tggtaaatgc agaattatta
     3841 cctgccattt gctttctgaa agatttcaca aatcagagca aacgtgtctt taagcagact
     3901 ctgctccttt tactgttttt ctcttggccc acaccctttg cctcccctga atctgtgtgg
     3961 tgctgcagga actctgcacg ccgtgctagg aagcttcctt tctggcagag tgtttggcag
     4021 caaagctcta gaaacaggtg ccttcagagc agcctgggca ccagtcatga gtcttactga
     4081 gtcaaaaatc tgaacacact tgctgagaac caaatttatt ccttcagaaa aaccctctgt
     4141 ggagctttat gcgtcttgga ctcttcttcc tagattaagg tttgcattcc ctcctgtcag
     4201 gtacaagacg atgaaagccg tcattgatcc tcgctgctga gtgacaggga gaagcagcac
     4261 caccccgcgg ctcttctctg atgttgtaac tcagtgtgga agtctctctg ggctcttagc
     4321 atgggtgttc tttacctagt ggagcagtta agcagatgaa gccacttaga gaagctggtc
     4381 gtggaaggag agatccactg aggctagcag acatgtggag ccagaaacca gatcggcaaa
     4441 tggaggaacc tcggagttga ctggaaggat ctccgtcggt ttcacgaggc tgtaagtagt
     4501 agtggtttta gtgatgcgtg atttgatctg gtatgaagtt ccgtggcaaa gctgctgttt
     4561 tctaaaagcc attcttagct caaaccaacc cttaagagaa gtttcggcag attgtgtcgg
     4621 cagtattgaa agacatctag aaaaagctgc tgattgaatt ggttgtggga atggagtttg
     4681 gtgacatttg taatttaata cactcattgc tttttatgga ttgtggtatt gtctgacttt
     4741 actatgattc cttcagcaga aaagtaactc ttgtgcatat attgaagtgt ttttccagct
     4801 atgaattctt tagggtagag atttatttac caaatgtgaa ttcttttgag gaagtatgaa
     4861 gttttgtaga aattgactgt gaaatgtcag agaaaaataa aagtcactta cttgaaaact
     4921 a
//
LOCUS       XM_032620085            4053 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X2, mRNA.
ACCESSION   XM_032620085
VERSION     XM_032620085.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4053
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4053
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747631"
     CDS             173..1372
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X1"
                     /protein_id="XP_032475976.1"
                     /db_xref="GeneID:116747631"
                     /translation="MERKNPSREGSRRLSAKLSKGPEMKKVSRQLGMAAAESDKDSGF
                     SDGSSECLSSAEQMESEDMLSALGWSREDRPRPSAKPASGAFPTLAPMVVMKNVLVKQ
                     GSSSSQLQSWSVQPSFEVISAQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSY
                     TKIAPHPGKRGLSLSPEERGEGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPP
                     STKLAEDSALQGVPCLVAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGM
                     ESNSPLSPLSASYSSPLWAAEHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITL
                     KTKELIRQNQATQVELDQLKEQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEA
                     FSDQPDI"
     misc_feature    284..1300
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 gccgggactt tcgggggaca gagggccaga tgatgggagc aggcggtggt gcgttcctgc
       61 cccatttagt tggtcggttt tgctgcgagg gtcaggactg cgtggcagag gagatcgcgg
      121 ggcagtccag atgaaaagag tactgatgaa tgcacttcca gcccagtaaa acatggagag
      181 gaagaaccca tccagagagg gctctagaag gctctcagcc aaactgagca aaggcccaga
      241 gatgaaaaaa gtgtctcgtc aactcggcat ggcagctgct gagtcagata aggactctgg
      301 attttcagat gggagctctg aatgcctgag ctcggcagag cagatggagt ctgaggacat
      361 gctgagcgcc ttaggctgga gccgagaaga caggccaagg ccgagcgcca agcctgcgag
      421 cggtgccttc ccaacgctgg cccccatggt tgtcatgaag aacgtgctgg tcaaacaggg
      481 cagcagctca tcccagctcc agtcgtggtc tgtgcagccc tcctttgaag tgatctcagc
      541 acagccccag ctcctattcc ttcatccacc tgtaccgtct cctgtcagcc catgtcacgc
      601 tggtgagaaa aagtcggact ccaggaacta cttgcccatt ctcaattctt acaccaaaat
      661 agccccacac ccaggcaaaa ggggcctctc cctcagccca gaagaaagag gagaaggtgg
      721 aatgcagaag aagatctgta ctgagagact tgggccaagc ctgtcttcta gtgagccgac
      781 caagactggt gctggcccac ccgggcccct gactccagcg ccccccagca ccaagcttgc
      841 cgaggactca gctcttcagg gtgtgccctg cctggtggca ggtgggagtc cacagacgct
      901 tcagccagtg tccagcagcc atgtggctaa agctcccagc ctgacctttg cttcccccgc
      961 cagccctgtc tgtgcgtcag acagtaccct gcacgggatg gagagcaact ccccgctgtc
     1021 cccactgtca gctagttaca gctcccctct gtgggctgca gagcacctct gccgcagccc
     1081 agatagcttt tcagagcagc ggcagagcaa gcacaggcgc tttcagaata ccctagtagt
     1141 cctacacaaa tctggtttgc tggagatcac tttgaaaacc aaggagttga ttcgtcagaa
     1201 ccaggcaact caggtggaac tagaccagct aaaggagcag acccggctat ttatcgaggc
     1261 cgccaagagc agggctcctc aggcttgggc caagctgcag gcgtctttaa catcagggtc
     1321 aggtcatcct ggcagtgacc tagaagcgtt ctccgatcag ccagacatat aacatagaag
     1381 gcatattttc ctgttacttg agtggttctt tttaactctt ttaccgttat ctgctcctgt
     1441 ttcccaaagc ttatgtaaga gctttccttt taaacttaaa ctgttcagcg gttcacttac
     1501 gaagccacat gccgatacct ggctgctgtc ttaacctgtg gtctgtgcac agtttacctt
     1561 tgtctccgtt ccactgagga cctcagattt gggtgtcctc gagtccctct tccttagcct
     1621 gcaggcactt cgatggatca cggggcaaag cgggaaagat gcttgtgtgg ggcccctcta
     1681 gctgtcactt cccaccatcc cactcactaa ccgtgatcag ggatgcagtg acgcagacaa
     1741 gcatacagag tgacacctgt caagccaggg agtaggtgac ataaggagcc ccccgtggat
     1801 cttcccttga aggtcttagt cacagaggaa aatatgagag gagggtgttt ccattttacg
     1861 aggcattgtg ccatttggga gaaacctaaa acgctctggg cacacattgg tccttggatg
     1921 caagcactta atcacttaaa gctttgtttc tttaaactcg aaagtcgagg ggaaggggta
     1981 gtaccgttaa ctcgtacact ttaatcataa gccagatttc tgtgaaactg gtaggtgaaa
     2041 tatttcagat ttgtaaagta tggaatggat ttaggaccat ctggagctac agttgatgaa
     2101 ctgctttttt gactcagagt ctgaagaagg gagaaatggc tagcatctct tggttgagag
     2161 ctggaagatt ctgataattt atgctttttt ctctctctgt ctcttctttt gaaacaatgc
     2221 aaaagaagat tttcttatat gtgaaaatcc taaaagagag cttcatggtt cccgattgtg
     2281 taatacaagt cagccctctg ctaccatcat ttttcccccc tttgttttta caaaagagga
     2341 aagaaatgat tattaagctt gaaaaacttt gaattaaaat catcataaaa tcatcataac
     2401 atcataatgt tatgacatta agtccacaaa aaattggaaa acgtcatcca ttttctttcc
     2461 acatccagag ttttcatttg tcttacgtca cggtgacgtg gagcagtctt ctgtgtttct
     2521 ttcgtgcatt ggatttggct gcaaagccaa aggtgtagtg ggttatgtga agtccgtcta
     2581 gaagtggaga gcgttatgag aacttgcaga tgatacacac cctttcagcc tcattgtaaa
     2641 ctagatttct aagtcgtaaa gttgccagct ttttatcctc ccatttaaaa atttcatcct
     2701 cttgaaaatc tttgtaccga ttactttagt aagaaattct gtgtgaccaa cttcatcttt
     2761 tctgcaagga aaatgttctt gaagttctac caaggccaga agctaatgct catgcttgct
     2821 gggtagttgt aactctgaac atagttttaa aattacaagg cttcagattg cctgcatttt
     2881 gttctcaaac atgcacaatt tagatacgac caatttagaa gtaaacaact cagtgaaacc
     2941 tttagactct cctggtaaat gcagaattat tacctgccat ttgctttctg aaagatttca
     3001 caaatcagag caaacgtgtc tttaagcaga ctctgctcct tttactgttt ttctcttggc
     3061 ccacaccctt tgcctcccct gaatctgtgt ggtgctgcag gaactctgca cgccgtgcta
     3121 ggaagcttcc tttctggcag agtgtttggc agcaaagctc tagaaacagg tgccttcaga
     3181 gcagcctggg caccagtcat gagtcttact gagtcaaaaa tctgaacaca cttgctgaga
     3241 accaaattta ttccttcaga aaaaccctct gtggagcttt atgcgtcttg gactcttctt
     3301 cctagattaa ggtttgcatt ccctcctgtc aggtacaaga cgatgaaagc cgtcattgat
     3361 cctcgctgct gagtgacagg gagaagcagc accaccccgc ggctcttctc tgatgttgta
     3421 actcagtgtg gaagtctctc tgggctctta gcatgggtgt tctttaccta gtggagcagt
     3481 taagcagatg aagccactta gagaagctgg tcgtggaagg agagatccac tgaggctagc
     3541 agacatgtgg agccagaaac cagatcggca aatggaggaa cctcggagtt gactggaagg
     3601 atctccgtcg gtttcacgag gctgtaagta gtagtggttt tagtgatgcg tgatttgatc
     3661 tggtatgaag ttccgtggca aagctgctgt tttctaaaag ccattcttag ctcaaaccaa
     3721 cccttaagag aagtttcggc agattgtgtc ggcagtattg aaagacatct agaaaaagct
     3781 gctgattgaa ttggttgtgg gaatggagtt tggtgacatt tgtaatttaa tacactcatt
     3841 gctttttatg gattgtggta ttgtctgact ttactatgat tccttcagca gaaaagtaac
     3901 tcttgtgcat atattgaagt gtttttccag ctatgaattc tttagggtag agatttattt
     3961 accaaatgtg aattcttttg aggaagtatg aagttttgta gaaattgact gtgaaatgtc
     4021 agagaaaaat aaaagtcact tacttgaaaa cta
//
LOCUS       XM_032620094            3998 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X3, mRNA.
ACCESSION   XM_032620094
VERSION     XM_032620094.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3998
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3998
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747631"
     CDS             118..1317
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X1"
                     /protein_id="XP_032475985.1"
                     /db_xref="GeneID:116747631"
                     /translation="MERKNPSREGSRRLSAKLSKGPEMKKVSRQLGMAAAESDKDSGF
                     SDGSSECLSSAEQMESEDMLSALGWSREDRPRPSAKPASGAFPTLAPMVVMKNVLVKQ
                     GSSSSQLQSWSVQPSFEVISAQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSY
                     TKIAPHPGKRGLSLSPEERGEGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPP
                     STKLAEDSALQGVPCLVAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGM
                     ESNSPLSPLSASYSSPLWAAEHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITL
                     KTKELIRQNQATQVELDQLKEQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEA
                     FSDQPDI"
     misc_feature    229..1245
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 ggagggtttg ggcgaggagc gtgggaaaag gaagtgggag taggggagag aagaagggaa
       61 gcaagggcag tccagatgaa aagagtactg atgaatgcac ttccagccca gtaaaacatg
      121 gagaggaaga acccatccag agagggctct agaaggctct cagccaaact gagcaaaggc
      181 ccagagatga aaaaagtgtc tcgtcaactc ggcatggcag ctgctgagtc agataaggac
      241 tctggatttt cagatgggag ctctgaatgc ctgagctcgg cagagcagat ggagtctgag
      301 gacatgctga gcgccttagg ctggagccga gaagacaggc caaggccgag cgccaagcct
      361 gcgagcggtg ccttcccaac gctggccccc atggttgtca tgaagaacgt gctggtcaaa
      421 cagggcagca gctcatccca gctccagtcg tggtctgtgc agccctcctt tgaagtgatc
      481 tcagcacagc cccagctcct attccttcat ccacctgtac cgtctcctgt cagcccatgt
      541 cacgctggtg agaaaaagtc ggactccagg aactacttgc ccattctcaa ttcttacacc
      601 aaaatagccc cacacccagg caaaaggggc ctctccctca gcccagaaga aagaggagaa
      661 ggtggaatgc agaagaagat ctgtactgag agacttgggc caagcctgtc ttctagtgag
      721 ccgaccaaga ctggtgctgg cccacccggg cccctgactc cagcgccccc cagcaccaag
      781 cttgccgagg actcagctct tcagggtgtg ccctgcctgg tggcaggtgg gagtccacag
      841 acgcttcagc cagtgtccag cagccatgtg gctaaagctc ccagcctgac ctttgcttcc
      901 cccgccagcc ctgtctgtgc gtcagacagt accctgcacg ggatggagag caactccccg
      961 ctgtccccac tgtcagctag ttacagctcc cctctgtggg ctgcagagca cctctgccgc
     1021 agcccagata gcttttcaga gcagcggcag agcaagcaca ggcgctttca gaatacccta
     1081 gtagtcctac acaaatctgg tttgctggag atcactttga aaaccaagga gttgattcgt
     1141 cagaaccagg caactcaggt ggaactagac cagctaaagg agcagacccg gctatttatc
     1201 gaggccgcca agagcagggc tcctcaggct tgggccaagc tgcaggcgtc tttaacatca
     1261 gggtcaggtc atcctggcag tgacctagaa gcgttctccg atcagccaga catataacat
     1321 agaaggcata ttttcctgtt acttgagtgg ttctttttaa ctcttttacc gttatctgct
     1381 cctgtttccc aaagcttatg taagagcttt ccttttaaac ttaaactgtt cagcggttca
     1441 cttacgaagc cacatgccga tacctggctg ctgtcttaac ctgtggtctg tgcacagttt
     1501 acctttgtct ccgttccact gaggacctca gatttgggtg tcctcgagtc cctcttcctt
     1561 agcctgcagg cacttcgatg gatcacgggg caaagcggga aagatgcttg tgtggggccc
     1621 ctctagctgt cacttcccac catcccactc actaaccgtg atcagggatg cagtgacgca
     1681 gacaagcata cagagtgaca cctgtcaagc cagggagtag gtgacataag gagccccccg
     1741 tggatcttcc cttgaaggtc ttagtcacag aggaaaatat gagaggaggg tgtttccatt
     1801 ttacgaggca ttgtgccatt tgggagaaac ctaaaacgct ctgggcacac attggtcctt
     1861 ggatgcaagc acttaatcac ttaaagcttt gtttctttaa actcgaaagt cgaggggaag
     1921 gggtagtacc gttaactcgt acactttaat cataagccag atttctgtga aactggtagg
     1981 tgaaatattt cagatttgta aagtatggaa tggatttagg accatctgga gctacagttg
     2041 atgaactgct tttttgactc agagtctgaa gaagggagaa atggctagca tctcttggtt
     2101 gagagctgga agattctgat aatttatgct tttttctctc tctgtctctt cttttgaaac
     2161 aatgcaaaag aagattttct tatatgtgaa aatcctaaaa gagagcttca tggttcccga
     2221 ttgtgtaata caagtcagcc ctctgctacc atcatttttc ccccctttgt ttttacaaaa
     2281 gaggaaagaa atgattatta agcttgaaaa actttgaatt aaaatcatca taaaatcatc
     2341 ataacatcat aatgttatga cattaagtcc acaaaaaatt ggaaaacgtc atccattttc
     2401 tttccacatc cagagttttc atttgtctta cgtcacggtg acgtggagca gtcttctgtg
     2461 tttctttcgt gcattggatt tggctgcaaa gccaaaggtg tagtgggtta tgtgaagtcc
     2521 gtctagaagt ggagagcgtt atgagaactt gcagatgata cacacccttt cagcctcatt
     2581 gtaaactaga tttctaagtc gtaaagttgc cagcttttta tcctcccatt taaaaatttc
     2641 atcctcttga aaatctttgt accgattact ttagtaagaa attctgtgtg accaacttca
     2701 tcttttctgc aaggaaaatg ttcttgaagt tctaccaagg ccagaagcta atgctcatgc
     2761 ttgctgggta gttgtaactc tgaacatagt tttaaaatta caaggcttca gattgcctgc
     2821 attttgttct caaacatgca caatttagat acgaccaatt tagaagtaaa caactcagtg
     2881 aaacctttag actctcctgg taaatgcaga attattacct gccatttgct ttctgaaaga
     2941 tttcacaaat cagagcaaac gtgtctttaa gcagactctg ctccttttac tgtttttctc
     3001 ttggcccaca ccctttgcct cccctgaatc tgtgtggtgc tgcaggaact ctgcacgccg
     3061 tgctaggaag cttcctttct ggcagagtgt ttggcagcaa agctctagaa acaggtgcct
     3121 tcagagcagc ctgggcacca gtcatgagtc ttactgagtc aaaaatctga acacacttgc
     3181 tgagaaccaa atttattcct tcagaaaaac cctctgtgga gctttatgcg tcttggactc
     3241 ttcttcctag attaaggttt gcattccctc ctgtcaggta caagacgatg aaagccgtca
     3301 ttgatcctcg ctgctgagtg acagggagaa gcagcaccac cccgcggctc ttctctgatg
     3361 ttgtaactca gtgtggaagt ctctctgggc tcttagcatg ggtgttcttt acctagtgga
     3421 gcagttaagc agatgaagcc acttagagaa gctggtcgtg gaaggagaga tccactgagg
     3481 ctagcagaca tgtggagcca gaaaccagat cggcaaatgg aggaacctcg gagttgactg
     3541 gaaggatctc cgtcggtttc acgaggctgt aagtagtagt ggttttagtg atgcgtgatt
     3601 tgatctggta tgaagttccg tggcaaagct gctgttttct aaaagccatt cttagctcaa
     3661 accaaccctt aagagaagtt tcggcagatt gtgtcggcag tattgaaaga catctagaaa
     3721 aagctgctga ttgaattggt tgtgggaatg gagtttggtg acatttgtaa tttaatacac
     3781 tcattgcttt ttatggattg tggtattgtc tgactttact atgattcctt cagcagaaaa
     3841 gtaactcttg tgcatatatt gaagtgtttt tccagctatg aattctttag ggtagagatt
     3901 tatttaccaa atgtgaattc ttttgaggaa gtatgaagtt ttgtagaaat tgactgtgaa
     3961 atgtcagaga aaaataaaag tcacttactt gaaaacta
//
LOCUS       XM_032620098            3952 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X4, mRNA.
ACCESSION   XM_032620098
VERSION     XM_032620098.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3952
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3952
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747631"
     CDS             72..1271
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X1"
                     /protein_id="XP_032475989.1"
                     /db_xref="GeneID:116747631"
                     /translation="MERKNPSREGSRRLSAKLSKGPEMKKVSRQLGMAAAESDKDSGF
                     SDGSSECLSSAEQMESEDMLSALGWSREDRPRPSAKPASGAFPTLAPMVVMKNVLVKQ
                     GSSSSQLQSWSVQPSFEVISAQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSY
                     TKIAPHPGKRGLSLSPEERGEGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPP
                     STKLAEDSALQGVPCLVAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGM
                     ESNSPLSPLSASYSSPLWAAEHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITL
                     KTKELIRQNQATQVELDQLKEQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEA
                     FSDQPDI"
     misc_feature    183..1199
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 gacatgatgc cggccctcgg gcagtccaga tgaaaagagt actgatgaat gcacttccag
       61 cccagtaaaa catggagagg aagaacccat ccagagaggg ctctagaagg ctctcagcca
      121 aactgagcaa aggcccagag atgaaaaaag tgtctcgtca actcggcatg gcagctgctg
      181 agtcagataa ggactctgga ttttcagatg ggagctctga atgcctgagc tcggcagagc
      241 agatggagtc tgaggacatg ctgagcgcct taggctggag ccgagaagac aggccaaggc
      301 cgagcgccaa gcctgcgagc ggtgccttcc caacgctggc ccccatggtt gtcatgaaga
      361 acgtgctggt caaacagggc agcagctcat cccagctcca gtcgtggtct gtgcagccct
      421 cctttgaagt gatctcagca cagccccagc tcctattcct tcatccacct gtaccgtctc
      481 ctgtcagccc atgtcacgct ggtgagaaaa agtcggactc caggaactac ttgcccattc
      541 tcaattctta caccaaaata gccccacacc caggcaaaag gggcctctcc ctcagcccag
      601 aagaaagagg agaaggtgga atgcagaaga agatctgtac tgagagactt gggccaagcc
      661 tgtcttctag tgagccgacc aagactggtg ctggcccacc cgggcccctg actccagcgc
      721 cccccagcac caagcttgcc gaggactcag ctcttcaggg tgtgccctgc ctggtggcag
      781 gtgggagtcc acagacgctt cagccagtgt ccagcagcca tgtggctaaa gctcccagcc
      841 tgacctttgc ttcccccgcc agccctgtct gtgcgtcaga cagtaccctg cacgggatgg
      901 agagcaactc cccgctgtcc ccactgtcag ctagttacag ctcccctctg tgggctgcag
      961 agcacctctg ccgcagccca gatagctttt cagagcagcg gcagagcaag cacaggcgct
     1021 ttcagaatac cctagtagtc ctacacaaat ctggtttgct ggagatcact ttgaaaacca
     1081 aggagttgat tcgtcagaac caggcaactc aggtggaact agaccagcta aaggagcaga
     1141 cccggctatt tatcgaggcc gccaagagca gggctcctca ggcttgggcc aagctgcagg
     1201 cgtctttaac atcagggtca ggtcatcctg gcagtgacct agaagcgttc tccgatcagc
     1261 cagacatata acatagaagg catattttcc tgttacttga gtggttcttt ttaactcttt
     1321 taccgttatc tgctcctgtt tcccaaagct tatgtaagag ctttcctttt aaacttaaac
     1381 tgttcagcgg ttcacttacg aagccacatg ccgatacctg gctgctgtct taacctgtgg
     1441 tctgtgcaca gtttaccttt gtctccgttc cactgaggac ctcagatttg ggtgtcctcg
     1501 agtccctctt ccttagcctg caggcacttc gatggatcac ggggcaaagc gggaaagatg
     1561 cttgtgtggg gcccctctag ctgtcacttc ccaccatccc actcactaac cgtgatcagg
     1621 gatgcagtga cgcagacaag catacagagt gacacctgtc aagccaggga gtaggtgaca
     1681 taaggagccc cccgtggatc ttcccttgaa ggtcttagtc acagaggaaa atatgagagg
     1741 agggtgtttc cattttacga ggcattgtgc catttgggag aaacctaaaa cgctctgggc
     1801 acacattggt ccttggatgc aagcacttaa tcacttaaag ctttgtttct ttaaactcga
     1861 aagtcgaggg gaaggggtag taccgttaac tcgtacactt taatcataag ccagatttct
     1921 gtgaaactgg taggtgaaat atttcagatt tgtaaagtat ggaatggatt taggaccatc
     1981 tggagctaca gttgatgaac tgcttttttg actcagagtc tgaagaaggg agaaatggct
     2041 agcatctctt ggttgagagc tggaagattc tgataattta tgcttttttc tctctctgtc
     2101 tcttcttttg aaacaatgca aaagaagatt ttcttatatg tgaaaatcct aaaagagagc
     2161 ttcatggttc ccgattgtgt aatacaagtc agccctctgc taccatcatt tttcccccct
     2221 ttgtttttac aaaagaggaa agaaatgatt attaagcttg aaaaactttg aattaaaatc
     2281 atcataaaat catcataaca tcataatgtt atgacattaa gtccacaaaa aattggaaaa
     2341 cgtcatccat tttctttcca catccagagt tttcatttgt cttacgtcac ggtgacgtgg
     2401 agcagtcttc tgtgtttctt tcgtgcattg gatttggctg caaagccaaa ggtgtagtgg
     2461 gttatgtgaa gtccgtctag aagtggagag cgttatgaga acttgcagat gatacacacc
     2521 ctttcagcct cattgtaaac tagatttcta agtcgtaaag ttgccagctt tttatcctcc
     2581 catttaaaaa tttcatcctc ttgaaaatct ttgtaccgat tactttagta agaaattctg
     2641 tgtgaccaac ttcatctttt ctgcaaggaa aatgttcttg aagttctacc aaggccagaa
     2701 gctaatgctc atgcttgctg ggtagttgta actctgaaca tagttttaaa attacaaggc
     2761 ttcagattgc ctgcattttg ttctcaaaca tgcacaattt agatacgacc aatttagaag
     2821 taaacaactc agtgaaacct ttagactctc ctggtaaatg cagaattatt acctgccatt
     2881 tgctttctga aagatttcac aaatcagagc aaacgtgtct ttaagcagac tctgctcctt
     2941 ttactgtttt tctcttggcc cacacccttt gcctcccctg aatctgtgtg gtgctgcagg
     3001 aactctgcac gccgtgctag gaagcttcct ttctggcaga gtgtttggca gcaaagctct
     3061 agaaacaggt gccttcagag cagcctgggc accagtcatg agtcttactg agtcaaaaat
     3121 ctgaacacac ttgctgagaa ccaaatttat tccttcagaa aaaccctctg tggagcttta
     3181 tgcgtcttgg actcttcttc ctagattaag gtttgcattc cctcctgtca ggtacaagac
     3241 gatgaaagcc gtcattgatc ctcgctgctg agtgacaggg agaagcagca ccaccccgcg
     3301 gctcttctct gatgttgtaa ctcagtgtgg aagtctctct gggctcttag catgggtgtt
     3361 ctttacctag tggagcagtt aagcagatga agccacttag agaagctggt cgtggaagga
     3421 gagatccact gaggctagca gacatgtgga gccagaaacc agatcggcaa atggaggaac
     3481 ctcggagttg actggaagga tctccgtcgg tttcacgagg ctgtaagtag tagtggtttt
     3541 agtgatgcgt gatttgatct ggtatgaagt tccgtggcaa agctgctgtt ttctaaaagc
     3601 cattcttagc tcaaaccaac ccttaagaga agtttcggca gattgtgtcg gcagtattga
     3661 aagacatcta gaaaaagctg ctgattgaat tggttgtggg aatggagttt ggtgacattt
     3721 gtaatttaat acactcattg ctttttatgg attgtggtat tgtctgactt tactatgatt
     3781 ccttcagcag aaaagtaact cttgtgcata tattgaagtg tttttccagc tatgaattct
     3841 ttagggtaga gatttattta ccaaatgtga attcttttga ggaagtatga agttttgtag
     3901 aaattgactg tgaaatgtca gagaaaaata aaagtcactt acttgaaaac ta
//
LOCUS       XM_032620105            4543 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X5, mRNA.
ACCESSION   XM_032620105
VERSION     XM_032620105.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4543
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4543
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 13 long SRA reads, 6
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747631"
     CDS             663..1862
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X1"
                     /protein_id="XP_032475996.1"
                     /db_xref="GeneID:116747631"
                     /translation="MERKNPSREGSRRLSAKLSKGPEMKKVSRQLGMAAAESDKDSGF
                     SDGSSECLSSAEQMESEDMLSALGWSREDRPRPSAKPASGAFPTLAPMVVMKNVLVKQ
                     GSSSSQLQSWSVQPSFEVISAQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSY
                     TKIAPHPGKRGLSLSPEERGEGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPP
                     STKLAEDSALQGVPCLVAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGM
                     ESNSPLSPLSASYSSPLWAAEHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITL
                     KTKELIRQNQATQVELDQLKEQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEA
                     FSDQPDI"
     misc_feature    774..1790
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 gcctccgcac gggctcgcct gcaagtcagc atggcctttc ccggtcccca accctaacgg
       61 cgtgcctctg tacaaaccga gagcgctgtt tcccccagcc gacttccacc cacgcccccg
      121 ggagaatcac ccctcctgcc ttgtccacta gaagccgggc cacccctgct tctccggacc
      181 tcgcctctga accacgcccc cagcagctgg ttgctcaaga tacccgtaca acatggcggc
      241 tgggcctgga gaaccaacca tagagacgcc caccttccgc ggagagcgcg ccgacctctt
      301 aaggacgccc gcgcctccct gataggcgtg ccgacgtcat cttccggcgg agacgaaaca
      361 gcgggcgccg ccaagggtcc ttctaggaga acagcgagca gtctcggtgg tgccgggtcg
      421 tccgagccgt gtcacgtggc tggcgaaagc cgtcgcggag gctggggggg aggagaaatg
      481 ggcgggagga ctgggggata gcttgagacc cgacgacaac ggggttgtca tggagccgcg
      541 gggccgggct cgcgcatgcg ccactctact cgcgggtcgt ccggtcgcgg agcagcgacc
      601 tcggtcctag ggcagtccag atgaaaagag tactgatgaa tgcacttcca gcccagtaaa
      661 acatggagag gaagaaccca tccagagagg gctctagaag gctctcagcc aaactgagca
      721 aaggcccaga gatgaaaaaa gtgtctcgtc aactcggcat ggcagctgct gagtcagata
      781 aggactctgg attttcagat gggagctctg aatgcctgag ctcggcagag cagatggagt
      841 ctgaggacat gctgagcgcc ttaggctgga gccgagaaga caggccaagg ccgagcgcca
      901 agcctgcgag cggtgccttc ccaacgctgg cccccatggt tgtcatgaag aacgtgctgg
      961 tcaaacaggg cagcagctca tcccagctcc agtcgtggtc tgtgcagccc tcctttgaag
     1021 tgatctcagc acagccccag ctcctattcc ttcatccacc tgtaccgtct cctgtcagcc
     1081 catgtcacgc tggtgagaaa aagtcggact ccaggaacta cttgcccatt ctcaattctt
     1141 acaccaaaat agccccacac ccaggcaaaa ggggcctctc cctcagccca gaagaaagag
     1201 gagaaggtgg aatgcagaag aagatctgta ctgagagact tgggccaagc ctgtcttcta
     1261 gtgagccgac caagactggt gctggcccac ccgggcccct gactccagcg ccccccagca
     1321 ccaagcttgc cgaggactca gctcttcagg gtgtgccctg cctggtggca ggtgggagtc
     1381 cacagacgct tcagccagtg tccagcagcc atgtggctaa agctcccagc ctgacctttg
     1441 cttcccccgc cagccctgtc tgtgcgtcag acagtaccct gcacgggatg gagagcaact
     1501 ccccgctgtc cccactgtca gctagttaca gctcccctct gtgggctgca gagcacctct
     1561 gccgcagccc agatagcttt tcagagcagc ggcagagcaa gcacaggcgc tttcagaata
     1621 ccctagtagt cctacacaaa tctggtttgc tggagatcac tttgaaaacc aaggagttga
     1681 ttcgtcagaa ccaggcaact caggtggaac tagaccagct aaaggagcag acccggctat
     1741 ttatcgaggc cgccaagagc agggctcctc aggcttgggc caagctgcag gcgtctttaa
     1801 catcagggtc aggtcatcct ggcagtgacc tagaagcgtt ctccgatcag ccagacatat
     1861 aacatagaag gcatattttc ctgttacttg agtggttctt tttaactctt ttaccgttat
     1921 ctgctcctgt ttcccaaagc ttatgtaaga gctttccttt taaacttaaa ctgttcagcg
     1981 gttcacttac gaagccacat gccgatacct ggctgctgtc ttaacctgtg gtctgtgcac
     2041 agtttacctt tgtctccgtt ccactgagga cctcagattt gggtgtcctc gagtccctct
     2101 tccttagcct gcaggcactt cgatggatca cggggcaaag cgggaaagat gcttgtgtgg
     2161 ggcccctcta gctgtcactt cccaccatcc cactcactaa ccgtgatcag ggatgcagtg
     2221 acgcagacaa gcatacagag tgacacctgt caagccaggg agtaggtgac ataaggagcc
     2281 ccccgtggat cttcccttga aggtcttagt cacagaggaa aatatgagag gagggtgttt
     2341 ccattttacg aggcattgtg ccatttggga gaaacctaaa acgctctggg cacacattgg
     2401 tccttggatg caagcactta atcacttaaa gctttgtttc tttaaactcg aaagtcgagg
     2461 ggaaggggta gtaccgttaa ctcgtacact ttaatcataa gccagatttc tgtgaaactg
     2521 gtaggtgaaa tatttcagat ttgtaaagta tggaatggat ttaggaccat ctggagctac
     2581 agttgatgaa ctgctttttt gactcagagt ctgaagaagg gagaaatggc tagcatctct
     2641 tggttgagag ctggaagatt ctgataattt atgctttttt ctctctctgt ctcttctttt
     2701 gaaacaatgc aaaagaagat tttcttatat gtgaaaatcc taaaagagag cttcatggtt
     2761 cccgattgtg taatacaagt cagccctctg ctaccatcat ttttcccccc tttgttttta
     2821 caaaagagga aagaaatgat tattaagctt gaaaaacttt gaattaaaat catcataaaa
     2881 tcatcataac atcataatgt tatgacatta agtccacaaa aaattggaaa acgtcatcca
     2941 ttttctttcc acatccagag ttttcatttg tcttacgtca cggtgacgtg gagcagtctt
     3001 ctgtgtttct ttcgtgcatt ggatttggct gcaaagccaa aggtgtagtg ggttatgtga
     3061 agtccgtcta gaagtggaga gcgttatgag aacttgcaga tgatacacac cctttcagcc
     3121 tcattgtaaa ctagatttct aagtcgtaaa gttgccagct ttttatcctc ccatttaaaa
     3181 atttcatcct cttgaaaatc tttgtaccga ttactttagt aagaaattct gtgtgaccaa
     3241 cttcatcttt tctgcaagga aaatgttctt gaagttctac caaggccaga agctaatgct
     3301 catgcttgct gggtagttgt aactctgaac atagttttaa aattacaagg cttcagattg
     3361 cctgcatttt gttctcaaac atgcacaatt tagatacgac caatttagaa gtaaacaact
     3421 cagtgaaacc tttagactct cctggtaaat gcagaattat tacctgccat ttgctttctg
     3481 aaagatttca caaatcagag caaacgtgtc tttaagcaga ctctgctcct tttactgttt
     3541 ttctcttggc ccacaccctt tgcctcccct gaatctgtgt ggtgctgcag gaactctgca
     3601 cgccgtgcta ggaagcttcc tttctggcag agtgtttggc agcaaagctc tagaaacagg
     3661 tgccttcaga gcagcctggg caccagtcat gagtcttact gagtcaaaaa tctgaacaca
     3721 cttgctgaga accaaattta ttccttcaga aaaaccctct gtggagcttt atgcgtcttg
     3781 gactcttctt cctagattaa ggtttgcatt ccctcctgtc aggtacaaga cgatgaaagc
     3841 cgtcattgat cctcgctgct gagtgacagg gagaagcagc accaccccgc ggctcttctc
     3901 tgatgttgta actcagtgtg gaagtctctc tgggctctta gcatgggtgt tctttaccta
     3961 gtggagcagt taagcagatg aagccactta gagaagctgg tcgtggaagg agagatccac
     4021 tgaggctagc agacatgtgg agccagaaac cagatcggca aatggaggaa cctcggagtt
     4081 gactggaagg atctccgtcg gtttcacgag gctgtaagta gtagtggttt tagtgatgcg
     4141 tgatttgatc tggtatgaag ttccgtggca aagctgctgt tttctaaaag ccattcttag
     4201 ctcaaaccaa cccttaagag aagtttcggc agattgtgtc ggcagtattg aaagacatct
     4261 agaaaaagct gctgattgaa ttggttgtgg gaatggagtt tggtgacatt tgtaatttaa
     4321 tacactcatt gctttttatg gattgtggta ttgtctgact ttactatgat tccttcagca
     4381 gaaaagtaac tcttgtgcat atattgaagt gtttttccag ctatgaattc tttagggtag
     4441 agatttattt accaaatgtg aattcttttg aggaagtatg aagttttgta gaaattgact
     4501 gtgaaatgtc agagaaaaat aaaagtcact tacttgaaaa cta
//
LOCUS       XM_032620112            7275 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X6, mRNA.
ACCESSION   XM_032620112
VERSION     XM_032620112.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7275
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7275
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 12 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:116747631"
     CDS             3395..4594
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X1"
                     /protein_id="XP_032476003.1"
                     /db_xref="GeneID:116747631"
                     /translation="MERKNPSREGSRRLSAKLSKGPEMKKVSRQLGMAAAESDKDSGF
                     SDGSSECLSSAEQMESEDMLSALGWSREDRPRPSAKPASGAFPTLAPMVVMKNVLVKQ
                     GSSSSQLQSWSVQPSFEVISAQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSY
                     TKIAPHPGKRGLSLSPEERGEGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPP
                     STKLAEDSALQGVPCLVAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGM
                     ESNSPLSPLSASYSSPLWAAEHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITL
                     KTKELIRQNQATQVELDQLKEQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEA
                     FSDQPDI"
     misc_feature    3506..4522
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 atacccgtac aacatggcgg ctgggcctgg agaaccaacc atagagacgc ccaccttccg
       61 cggagagcgc gccgacctct taaggacgcc cgcgcctccc tgataggcgt gccgacgtca
      121 tcttccggcg gagacgaaac agcgggcgcc gccaagggtc cttctaggag aacagcgagc
      181 agtctcggtg gtgccgggtc gtccgagccg tgtcacgtgg ctggcgaaag ccgtcgcgga
      241 ggctgggggg gaggagaaat gggcgggagg actgggggat agcttgagac ccgacgacaa
      301 cggggttgtc atggagccgc ggggccgggc tcgcgcatgc gccactctac tcgcgggtcg
      361 tccggtcgcg gagcagcgac ctcggtccta gcaattactc atggctttct gggtggtaag
      421 gtcttgattt tctatggcct tgtcgcttta ctgtatttaa gcctctgctt gggctttcac
      481 ctcacacctt tgttcatgca tgcctgttaa acacatgaca cattttaaaa agaacttgag
      541 ctctcaggaa agttgccaag tatctataaa aggagagatc tgtgagcagc atttcagatc
      601 cttcccttgt acaccttggg tctccttttt atcataggcc taaatctcca tagagattgt
      661 ttgtggatta gaccaacctc taatttggtt gctggattta cccctgaggt ttcagcttag
      721 agtaaggggt ggatgagata cctgtttcct gcaggagacc agacctggcc gtgaggtgac
      781 cgtggtgttt ggaaatgcag actcttgacc ttcaagctgt tcaggtattt tggtgacagc
      841 taaagctgct agggctgtca gcaagactca gcacgacaga agagttgtta caatttatta
      901 ttctgtgagt acctcacaca ttaattgttg ggcgctgagg ttgcaaagat gaaaagacag
      961 cccttgaggt tgaagagatg aacagataat tagactctaa tgtaagaagt gcataaatag
     1021 aagaaacaag tgctgtggag cacttgttag aattttatct tatacctatt tacgtaaacc
     1081 tctagattca ttgattcact ttccattgtg agttttagtg tatattctct gtgggaacct
     1141 tttggacagt gtgttacacg tgcactcgta agaggcccat ttagggtcaa cccagcctta
     1201 acttggagtc ctcctaatgc agagttaggc ttgtgaggat ctgagatgtt tgtagggcag
     1261 tcgtagcggt ttccagtttg tgccaggaag cagagatggc acagtgggta tgagcttggt
     1321 aacccatttt caacccctgg tcagcttatg agcatctaac tttattgtaa aataatactg
     1381 aagaggcaaa aaaaaaaaat cttcttgagg ttttcaaact tcgccattgg tgtggccccg
     1441 ggtttgagag caccagtagt aaatgccatc actctgcctc tctcttatcg agggcctcgt
     1501 ctggtcttgt gtatgaatgg gtctgttgtt cactggctga ttgacgtcct cagcgtcact
     1561 cccaggaggg aagtgcctct ctcagggaga acaggtcaag acggcatgta gcccttcatt
     1621 ctctttccca cttgaacttc cctgggaact ttacttagga cagaggcttc cacatccaaa
     1681 gtagtcagtt tactattcta aagtagatta tgcattcttt atttccaatt gccaccagtt
     1741 ccccaggatc taaaatttta gcatctgttc tccttttaac gtcaacgttt cagcattttg
     1801 attccacaac caatattgtc cgactctcag atgagccaga tagattcctg tgtattttct
     1861 gtagctccgt tgactacact gtaataacag tagcaagacc ttgttcgttg tcttgtcaca
     1921 aggattgtag aagttgaagt gctttatcta aaatgcctgt gaaataatcc atttcataag
     1981 atattgtgaa actttgtcaa ggtcttaagt agttgcaact aacatgagct atcttcctca
     2041 tctaagtcaa tagtaggttc agacttaatt caagtctaat tgcccatcca tcaccgatgt
     2101 ctgcttccat ttttgaaaaa gccctccatt cactttcaga cagtattatt tcaggaaaat
     2161 gaaactatgt acgtttgttg ggtttcatac aaaaggatcc tgatttaatt agagatagtt
     2221 ttacatttta ttctgctttt taaactggat tttccatgcc gtcaaacttc atagccgtcc
     2281 agtagagaca tgtgctttgg catagtgtcg tgcaagatgt gacagtgcca ttgtttatct
     2341 ttcatgcacg tagtactaaa cgtggtctgt caaagagtgc taggttgaca tggattgaat
     2401 gaggaagcca gtccccttga atgagttaga tatggtacaa aataattttt acttggaact
     2461 gagtttaaaa ttctgatcag tgtgcgttcc ctttagtccg cttctacctt atgcaaaact
     2521 atgagcaaga gggtttctca gggctgcctg taaacctcct tgtcttctat ctaattttat
     2581 gttgaatccc tcctctgctc tggagtagtt aatgttcttc gctagatcct gtattagcag
     2641 aaatgttcac actcggcatt ttcagggtat ttcagataca gtgctgtttg gcagggggcc
     2701 atgtttccct ctactcagaa ggacaaatgg atggagtcga gaatggattg tgaataaaaa
     2761 cgccactggg tgttgcttaa acctactatc ttagtccatt tgggctgtca taacaaaata
     2821 ccgcagactg ggtagcttat aaaccacaga aatttatttc tcacagttct agaggtcgag
     2881 agtccaagct cagggtgcca gcatggtcca gggaaagccc tctttcaggt cacagacttc
     2941 tcactgactg tggtggaagg cgctagggac ctctctggag cctcttgtaa agctctaatc
     3001 ccatgaggtg aagccctcat gacttaagcc ccacctccta ataccatcat ctttgggagt
     3061 catgatttca tatatgaatt ttggggggac acaaacattc agactatagc actttgcagt
     3121 tccattatta ttattgtttt ccctgttggt cccctgttct ctttatccct gcagtatcct
     3181 tacagctggc atcccttggc gattcagagg gccttgttaa aatatcttga agggctcatt
     3241 gctctcatac tttgcactgt tagccgagtt ctggatctgc tttggactag ctgtgtatca
     3301 ctggatcaaa tctaggcttc tttccaggaa gtggacgacc agggcagtcc agatgaaaag
     3361 agtactgatg aatgcacttc cagcccagta aaacatggag aggaagaacc catccagaga
     3421 gggctctaga aggctctcag ccaaactgag caaaggccca gagatgaaaa aagtgtctcg
     3481 tcaactcggc atggcagctg ctgagtcaga taaggactct ggattttcag atgggagctc
     3541 tgaatgcctg agctcggcag agcagatgga gtctgaggac atgctgagcg ccttaggctg
     3601 gagccgagaa gacaggccaa ggccgagcgc caagcctgcg agcggtgcct tcccaacgct
     3661 ggcccccatg gttgtcatga agaacgtgct ggtcaaacag ggcagcagct catcccagct
     3721 ccagtcgtgg tctgtgcagc cctcctttga agtgatctca gcacagcccc agctcctatt
     3781 ccttcatcca cctgtaccgt ctcctgtcag cccatgtcac gctggtgaga aaaagtcgga
     3841 ctccaggaac tacttgccca ttctcaattc ttacaccaaa atagccccac acccaggcaa
     3901 aaggggcctc tccctcagcc cagaagaaag aggagaaggt ggaatgcaga agaagatctg
     3961 tactgagaga cttgggccaa gcctgtcttc tagtgagccg accaagactg gtgctggccc
     4021 acccgggccc ctgactccag cgccccccag caccaagctt gccgaggact cagctcttca
     4081 gggtgtgccc tgcctggtgg caggtgggag tccacagacg cttcagccag tgtccagcag
     4141 ccatgtggct aaagctccca gcctgacctt tgcttccccc gccagccctg tctgtgcgtc
     4201 agacagtacc ctgcacggga tggagagcaa ctccccgctg tccccactgt cagctagtta
     4261 cagctcccct ctgtgggctg cagagcacct ctgccgcagc ccagatagct tttcagagca
     4321 gcggcagagc aagcacaggc gctttcagaa taccctagta gtcctacaca aatctggttt
     4381 gctggagatc actttgaaaa ccaaggagtt gattcgtcag aaccaggcaa ctcaggtgga
     4441 actagaccag ctaaaggagc agacccggct atttatcgag gccgccaaga gcagggctcc
     4501 tcaggcttgg gccaagctgc aggcgtcttt aacatcaggg tcaggtcatc ctggcagtga
     4561 cctagaagcg ttctccgatc agccagacat ataacataga aggcatattt tcctgttact
     4621 tgagtggttc tttttaactc ttttaccgtt atctgctcct gtttcccaaa gcttatgtaa
     4681 gagctttcct tttaaactta aactgttcag cggttcactt acgaagccac atgccgatac
     4741 ctggctgctg tcttaacctg tggtctgtgc acagtttacc tttgtctccg ttccactgag
     4801 gacctcagat ttgggtgtcc tcgagtccct cttccttagc ctgcaggcac ttcgatggat
     4861 cacggggcaa agcgggaaag atgcttgtgt ggggcccctc tagctgtcac ttcccaccat
     4921 cccactcact aaccgtgatc agggatgcag tgacgcagac aagcatacag agtgacacct
     4981 gtcaagccag ggagtaggtg acataaggag ccccccgtgg atcttccctt gaaggtctta
     5041 gtcacagagg aaaatatgag aggagggtgt ttccatttta cgaggcattg tgccatttgg
     5101 gagaaaccta aaacgctctg ggcacacatt ggtccttgga tgcaagcact taatcactta
     5161 aagctttgtt tctttaaact cgaaagtcga ggggaagggg tagtaccgtt aactcgtaca
     5221 ctttaatcat aagccagatt tctgtgaaac tggtaggtga aatatttcag atttgtaaag
     5281 tatggaatgg atttaggacc atctggagct acagttgatg aactgctttt ttgactcaga
     5341 gtctgaagaa gggagaaatg gctagcatct cttggttgag agctggaaga ttctgataat
     5401 ttatgctttt ttctctctct gtctcttctt ttgaaacaat gcaaaagaag attttcttat
     5461 atgtgaaaat cctaaaagag agcttcatgg ttcccgattg tgtaatacaa gtcagccctc
     5521 tgctaccatc atttttcccc cctttgtttt tacaaaagag gaaagaaatg attattaagc
     5581 ttgaaaaact ttgaattaaa atcatcataa aatcatcata acatcataat gttatgacat
     5641 taagtccaca aaaaattgga aaacgtcatc cattttcttt ccacatccag agttttcatt
     5701 tgtcttacgt cacggtgacg tggagcagtc ttctgtgttt ctttcgtgca ttggatttgg
     5761 ctgcaaagcc aaaggtgtag tgggttatgt gaagtccgtc tagaagtgga gagcgttatg
     5821 agaacttgca gatgatacac accctttcag cctcattgta aactagattt ctaagtcgta
     5881 aagttgccag ctttttatcc tcccatttaa aaatttcatc ctcttgaaaa tctttgtacc
     5941 gattacttta gtaagaaatt ctgtgtgacc aacttcatct tttctgcaag gaaaatgttc
     6001 ttgaagttct accaaggcca gaagctaatg ctcatgcttg ctgggtagtt gtaactctga
     6061 acatagtttt aaaattacaa ggcttcagat tgcctgcatt ttgttctcaa acatgcacaa
     6121 tttagatacg accaatttag aagtaaacaa ctcagtgaaa cctttagact ctcctggtaa
     6181 atgcagaatt attacctgcc atttgctttc tgaaagattt cacaaatcag agcaaacgtg
     6241 tctttaagca gactctgctc cttttactgt ttttctcttg gcccacaccc tttgcctccc
     6301 ctgaatctgt gtggtgctgc aggaactctg cacgccgtgc taggaagctt cctttctggc
     6361 agagtgtttg gcagcaaagc tctagaaaca ggtgccttca gagcagcctg ggcaccagtc
     6421 atgagtctta ctgagtcaaa aatctgaaca cacttgctga gaaccaaatt tattccttca
     6481 gaaaaaccct ctgtggagct ttatgcgtct tggactcttc ttcctagatt aaggtttgca
     6541 ttccctcctg tcaggtacaa gacgatgaaa gccgtcattg atcctcgctg ctgagtgaca
     6601 gggagaagca gcaccacccc gcggctcttc tctgatgttg taactcagtg tggaagtctc
     6661 tctgggctct tagcatgggt gttctttacc tagtggagca gttaagcaga tgaagccact
     6721 tagagaagct ggtcgtggaa ggagagatcc actgaggcta gcagacatgt ggagccagaa
     6781 accagatcgg caaatggagg aacctcggag ttgactggaa ggatctccgt cggtttcacg
     6841 aggctgtaag tagtagtggt tttagtgatg cgtgatttga tctggtatga agttccgtgg
     6901 caaagctgct gttttctaaa agccattctt agctcaaacc aacccttaag agaagtttcg
     6961 gcagattgtg tcggcagtat tgaaagacat ctagaaaaag ctgctgattg aattggttgt
     7021 gggaatggag tttggtgaca tttgtaattt aatacactca ttgcttttta tggattgtgg
     7081 tattgtctga ctttactatg attccttcag cagaaaagta actcttgtgc atatattgaa
     7141 gtgtttttcc agctatgaat tctttagggt agagatttat ttaccaaatg tgaattcttt
     7201 tgaggaagta tgaagttttg tagaaattga ctgtgaaatg tcagagaaaa ataaaagtca
     7261 cttacttgaa aacta
//
LOCUS       XM_032620121            4562 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X7, mRNA.
ACCESSION   XM_032620121
VERSION     XM_032620121.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4562
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4562
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 1 Protein, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747631"
     CDS             682..1881
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X1"
                     /protein_id="XP_032476012.1"
                     /db_xref="GeneID:116747631"
                     /translation="MERKNPSREGSRRLSAKLSKGPEMKKVSRQLGMAAAESDKDSGF
                     SDGSSECLSSAEQMESEDMLSALGWSREDRPRPSAKPASGAFPTLAPMVVMKNVLVKQ
                     GSSSSQLQSWSVQPSFEVISAQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSY
                     TKIAPHPGKRGLSLSPEERGEGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPP
                     STKLAEDSALQGVPCLVAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGM
                     ESNSPLSPLSASYSSPLWAAEHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITL
                     KTKELIRQNQATQVELDQLKEQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEA
                     FSDQPDI"
     misc_feature    793..1809
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 atacccgtac aacatggcgg ctgggcctgg agaaccaacc atagagacgc ccaccttccg
       61 cggagagcgc gccgacctct taaggacgcc cgcgcctccc tgataggcgt gccgacgtca
      121 tcttccggcg gagacgaaac agcgggcgcc gccaagggtc cttctaggag aacagcgagc
      181 agtctcggtg gtgccgggtc gtccgagccg tgtcacgtgg ctggcgaaag ccgtcgcgga
      241 ggctgggggg gaggagaaat gggcgggagg actgggggat agcttgagac ccgacgacaa
      301 cggggttgtc atggagccgc ggggccgggc tcgcgcatgc gccactctac tcgcgggtcg
      361 tccggtcgcg gagcagcgac ctcggtccta ggagaccaga cctggccgtg aggtgaccgt
      421 ggtgtttgga aatgcagact cttgaccttc aagctgttca gtatccttac agctggcatc
      481 ccttggcgat tcagagggcc ttgttaaaat atcttgaagg gctcattgct ctcatacttt
      541 gcactgttag ccgagttctg gatctgcttt ggactagctg tgtatcactg gatcaaatct
      601 aggcttcttt ccaggaagtg gacgaccagg gcagtccaga tgaaaagagt actgatgaat
      661 gcacttccag cccagtaaaa catggagagg aagaacccat ccagagaggg ctctagaagg
      721 ctctcagcca aactgagcaa aggcccagag atgaaaaaag tgtctcgtca actcggcatg
      781 gcagctgctg agtcagataa ggactctgga ttttcagatg ggagctctga atgcctgagc
      841 tcggcagagc agatggagtc tgaggacatg ctgagcgcct taggctggag ccgagaagac
      901 aggccaaggc cgagcgccaa gcctgcgagc ggtgccttcc caacgctggc ccccatggtt
      961 gtcatgaaga acgtgctggt caaacagggc agcagctcat cccagctcca gtcgtggtct
     1021 gtgcagccct cctttgaagt gatctcagca cagccccagc tcctattcct tcatccacct
     1081 gtaccgtctc ctgtcagccc atgtcacgct ggtgagaaaa agtcggactc caggaactac
     1141 ttgcccattc tcaattctta caccaaaata gccccacacc caggcaaaag gggcctctcc
     1201 ctcagcccag aagaaagagg agaaggtgga atgcagaaga agatctgtac tgagagactt
     1261 gggccaagcc tgtcttctag tgagccgacc aagactggtg ctggcccacc cgggcccctg
     1321 actccagcgc cccccagcac caagcttgcc gaggactcag ctcttcaggg tgtgccctgc
     1381 ctggtggcag gtgggagtcc acagacgctt cagccagtgt ccagcagcca tgtggctaaa
     1441 gctcccagcc tgacctttgc ttcccccgcc agccctgtct gtgcgtcaga cagtaccctg
     1501 cacgggatgg agagcaactc cccgctgtcc ccactgtcag ctagttacag ctcccctctg
     1561 tgggctgcag agcacctctg ccgcagccca gatagctttt cagagcagcg gcagagcaag
     1621 cacaggcgct ttcagaatac cctagtagtc ctacacaaat ctggtttgct ggagatcact
     1681 ttgaaaacca aggagttgat tcgtcagaac caggcaactc aggtggaact agaccagcta
     1741 aaggagcaga cccggctatt tatcgaggcc gccaagagca gggctcctca ggcttgggcc
     1801 aagctgcagg cgtctttaac atcagggtca ggtcatcctg gcagtgacct agaagcgttc
     1861 tccgatcagc cagacatata acatagaagg catattttcc tgttacttga gtggttcttt
     1921 ttaactcttt taccgttatc tgctcctgtt tcccaaagct tatgtaagag ctttcctttt
     1981 aaacttaaac tgttcagcgg ttcacttacg aagccacatg ccgatacctg gctgctgtct
     2041 taacctgtgg tctgtgcaca gtttaccttt gtctccgttc cactgaggac ctcagatttg
     2101 ggtgtcctcg agtccctctt ccttagcctg caggcacttc gatggatcac ggggcaaagc
     2161 gggaaagatg cttgtgtggg gcccctctag ctgtcacttc ccaccatccc actcactaac
     2221 cgtgatcagg gatgcagtga cgcagacaag catacagagt gacacctgtc aagccaggga
     2281 gtaggtgaca taaggagccc cccgtggatc ttcccttgaa ggtcttagtc acagaggaaa
     2341 atatgagagg agggtgtttc cattttacga ggcattgtgc catttgggag aaacctaaaa
     2401 cgctctgggc acacattggt ccttggatgc aagcacttaa tcacttaaag ctttgtttct
     2461 ttaaactcga aagtcgaggg gaaggggtag taccgttaac tcgtacactt taatcataag
     2521 ccagatttct gtgaaactgg taggtgaaat atttcagatt tgtaaagtat ggaatggatt
     2581 taggaccatc tggagctaca gttgatgaac tgcttttttg actcagagtc tgaagaaggg
     2641 agaaatggct agcatctctt ggttgagagc tggaagattc tgataattta tgcttttttc
     2701 tctctctgtc tcttcttttg aaacaatgca aaagaagatt ttcttatatg tgaaaatcct
     2761 aaaagagagc ttcatggttc ccgattgtgt aatacaagtc agccctctgc taccatcatt
     2821 tttcccccct ttgtttttac aaaagaggaa agaaatgatt attaagcttg aaaaactttg
     2881 aattaaaatc atcataaaat catcataaca tcataatgtt atgacattaa gtccacaaaa
     2941 aattggaaaa cgtcatccat tttctttcca catccagagt tttcatttgt cttacgtcac
     3001 ggtgacgtgg agcagtcttc tgtgtttctt tcgtgcattg gatttggctg caaagccaaa
     3061 ggtgtagtgg gttatgtgaa gtccgtctag aagtggagag cgttatgaga acttgcagat
     3121 gatacacacc ctttcagcct cattgtaaac tagatttcta agtcgtaaag ttgccagctt
     3181 tttatcctcc catttaaaaa tttcatcctc ttgaaaatct ttgtaccgat tactttagta
     3241 agaaattctg tgtgaccaac ttcatctttt ctgcaaggaa aatgttcttg aagttctacc
     3301 aaggccagaa gctaatgctc atgcttgctg ggtagttgta actctgaaca tagttttaaa
     3361 attacaaggc ttcagattgc ctgcattttg ttctcaaaca tgcacaattt agatacgacc
     3421 aatttagaag taaacaactc agtgaaacct ttagactctc ctggtaaatg cagaattatt
     3481 acctgccatt tgctttctga aagatttcac aaatcagagc aaacgtgtct ttaagcagac
     3541 tctgctcctt ttactgtttt tctcttggcc cacacccttt gcctcccctg aatctgtgtg
     3601 gtgctgcagg aactctgcac gccgtgctag gaagcttcct ttctggcaga gtgtttggca
     3661 gcaaagctct agaaacaggt gccttcagag cagcctgggc accagtcatg agtcttactg
     3721 agtcaaaaat ctgaacacac ttgctgagaa ccaaatttat tccttcagaa aaaccctctg
     3781 tggagcttta tgcgtcttgg actcttcttc ctagattaag gtttgcattc cctcctgtca
     3841 ggtacaagac gatgaaagcc gtcattgatc ctcgctgctg agtgacaggg agaagcagca
     3901 ccaccccgcg gctcttctct gatgttgtaa ctcagtgtgg aagtctctct gggctcttag
     3961 catgggtgtt ctttacctag tggagcagtt aagcagatga agccacttag agaagctggt
     4021 cgtggaagga gagatccact gaggctagca gacatgtgga gccagaaacc agatcggcaa
     4081 atggaggaac ctcggagttg actggaagga tctccgtcgg tttcacgagg ctgtaagtag
     4141 tagtggtttt agtgatgcgt gatttgatct ggtatgaagt tccgtggcaa agctgctgtt
     4201 ttctaaaagc cattcttagc tcaaaccaac ccttaagaga agtttcggca gattgtgtcg
     4261 gcagtattga aagacatcta gaaaaagctg ctgattgaat tggttgtggg aatggagttt
     4321 ggtgacattt gtaatttaat acactcattg ctttttatgg attgtggtat tgtctgactt
     4381 tactatgatt ccttcagcag aaaagtaact cttgtgcata tattgaagtg tttttccagc
     4441 tatgaattct ttagggtaga gatttattta ccaaatgtga attcttttga ggaagtatga
     4501 agttttgtag aaattgactg tgaaatgtca gagaaaaata aaagtcactt acttgaaaac
     4561 ta
//
LOCUS       XM_032620128            4492 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X8, mRNA.
ACCESSION   XM_032620128
VERSION     XM_032620128.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4492
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4492
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747631"
     CDS             612..1811
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X1"
                     /protein_id="XP_032476019.1"
                     /db_xref="GeneID:116747631"
                     /translation="MERKNPSREGSRRLSAKLSKGPEMKKVSRQLGMAAAESDKDSGF
                     SDGSSECLSSAEQMESEDMLSALGWSREDRPRPSAKPASGAFPTLAPMVVMKNVLVKQ
                     GSSSSQLQSWSVQPSFEVISAQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSY
                     TKIAPHPGKRGLSLSPEERGEGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPP
                     STKLAEDSALQGVPCLVAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGM
                     ESNSPLSPLSASYSSPLWAAEHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITL
                     KTKELIRQNQATQVELDQLKEQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEA
                     FSDQPDI"
     misc_feature    723..1739
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 atacccgtac aacatggcgg ctgggcctgg agaaccaacc atagagacgc ccaccttccg
       61 cggagagcgc gccgacctct taaggacgcc cgcgcctccc tgataggcgt gccgacgtca
      121 tcttccggcg gagacgaaac agcgggcgcc gccaagggtc cttctaggag aacagcgagc
      181 agtctcggtg gtgccgggtc gtccgagccg tgtcacgtgg ctggcgaaag ccgtcgcgga
      241 ggctgggggg gaggagaaat gggcgggagg actgggggat agcttgagac ccgacgacaa
      301 cggggttgtc atggagccgc ggggccgggc tcgcgcatgc gccactctac tcgcgggtcg
      361 tccggtcgcg gagcagcgac ctcggtccta gtatccttac agctggcatc ccttggcgat
      421 tcagagggcc ttgttaaaat atcttgaagg gctcattgct ctcatacttt gcactgttag
      481 ccgagttctg gatctgcttt ggactagctg tgtatcactg gatcaaatct aggcttcttt
      541 ccaggaagtg gacgaccagg gcagtccaga tgaaaagagt actgatgaat gcacttccag
      601 cccagtaaaa catggagagg aagaacccat ccagagaggg ctctagaagg ctctcagcca
      661 aactgagcaa aggcccagag atgaaaaaag tgtctcgtca actcggcatg gcagctgctg
      721 agtcagataa ggactctgga ttttcagatg ggagctctga atgcctgagc tcggcagagc
      781 agatggagtc tgaggacatg ctgagcgcct taggctggag ccgagaagac aggccaaggc
      841 cgagcgccaa gcctgcgagc ggtgccttcc caacgctggc ccccatggtt gtcatgaaga
      901 acgtgctggt caaacagggc agcagctcat cccagctcca gtcgtggtct gtgcagccct
      961 cctttgaagt gatctcagca cagccccagc tcctattcct tcatccacct gtaccgtctc
     1021 ctgtcagccc atgtcacgct ggtgagaaaa agtcggactc caggaactac ttgcccattc
     1081 tcaattctta caccaaaata gccccacacc caggcaaaag gggcctctcc ctcagcccag
     1141 aagaaagagg agaaggtgga atgcagaaga agatctgtac tgagagactt gggccaagcc
     1201 tgtcttctag tgagccgacc aagactggtg ctggcccacc cgggcccctg actccagcgc
     1261 cccccagcac caagcttgcc gaggactcag ctcttcaggg tgtgccctgc ctggtggcag
     1321 gtgggagtcc acagacgctt cagccagtgt ccagcagcca tgtggctaaa gctcccagcc
     1381 tgacctttgc ttcccccgcc agccctgtct gtgcgtcaga cagtaccctg cacgggatgg
     1441 agagcaactc cccgctgtcc ccactgtcag ctagttacag ctcccctctg tgggctgcag
     1501 agcacctctg ccgcagccca gatagctttt cagagcagcg gcagagcaag cacaggcgct
     1561 ttcagaatac cctagtagtc ctacacaaat ctggtttgct ggagatcact ttgaaaacca
     1621 aggagttgat tcgtcagaac caggcaactc aggtggaact agaccagcta aaggagcaga
     1681 cccggctatt tatcgaggcc gccaagagca gggctcctca ggcttgggcc aagctgcagg
     1741 cgtctttaac atcagggtca ggtcatcctg gcagtgacct agaagcgttc tccgatcagc
     1801 cagacatata acatagaagg catattttcc tgttacttga gtggttcttt ttaactcttt
     1861 taccgttatc tgctcctgtt tcccaaagct tatgtaagag ctttcctttt aaacttaaac
     1921 tgttcagcgg ttcacttacg aagccacatg ccgatacctg gctgctgtct taacctgtgg
     1981 tctgtgcaca gtttaccttt gtctccgttc cactgaggac ctcagatttg ggtgtcctcg
     2041 agtccctctt ccttagcctg caggcacttc gatggatcac ggggcaaagc gggaaagatg
     2101 cttgtgtggg gcccctctag ctgtcacttc ccaccatccc actcactaac cgtgatcagg
     2161 gatgcagtga cgcagacaag catacagagt gacacctgtc aagccaggga gtaggtgaca
     2221 taaggagccc cccgtggatc ttcccttgaa ggtcttagtc acagaggaaa atatgagagg
     2281 agggtgtttc cattttacga ggcattgtgc catttgggag aaacctaaaa cgctctgggc
     2341 acacattggt ccttggatgc aagcacttaa tcacttaaag ctttgtttct ttaaactcga
     2401 aagtcgaggg gaaggggtag taccgttaac tcgtacactt taatcataag ccagatttct
     2461 gtgaaactgg taggtgaaat atttcagatt tgtaaagtat ggaatggatt taggaccatc
     2521 tggagctaca gttgatgaac tgcttttttg actcagagtc tgaagaaggg agaaatggct
     2581 agcatctctt ggttgagagc tggaagattc tgataattta tgcttttttc tctctctgtc
     2641 tcttcttttg aaacaatgca aaagaagatt ttcttatatg tgaaaatcct aaaagagagc
     2701 ttcatggttc ccgattgtgt aatacaagtc agccctctgc taccatcatt tttcccccct
     2761 ttgtttttac aaaagaggaa agaaatgatt attaagcttg aaaaactttg aattaaaatc
     2821 atcataaaat catcataaca tcataatgtt atgacattaa gtccacaaaa aattggaaaa
     2881 cgtcatccat tttctttcca catccagagt tttcatttgt cttacgtcac ggtgacgtgg
     2941 agcagtcttc tgtgtttctt tcgtgcattg gatttggctg caaagccaaa ggtgtagtgg
     3001 gttatgtgaa gtccgtctag aagtggagag cgttatgaga acttgcagat gatacacacc
     3061 ctttcagcct cattgtaaac tagatttcta agtcgtaaag ttgccagctt tttatcctcc
     3121 catttaaaaa tttcatcctc ttgaaaatct ttgtaccgat tactttagta agaaattctg
     3181 tgtgaccaac ttcatctttt ctgcaaggaa aatgttcttg aagttctacc aaggccagaa
     3241 gctaatgctc atgcttgctg ggtagttgta actctgaaca tagttttaaa attacaaggc
     3301 ttcagattgc ctgcattttg ttctcaaaca tgcacaattt agatacgacc aatttagaag
     3361 taaacaactc agtgaaacct ttagactctc ctggtaaatg cagaattatt acctgccatt
     3421 tgctttctga aagatttcac aaatcagagc aaacgtgtct ttaagcagac tctgctcctt
     3481 ttactgtttt tctcttggcc cacacccttt gcctcccctg aatctgtgtg gtgctgcagg
     3541 aactctgcac gccgtgctag gaagcttcct ttctggcaga gtgtttggca gcaaagctct
     3601 agaaacaggt gccttcagag cagcctgggc accagtcatg agtcttactg agtcaaaaat
     3661 ctgaacacac ttgctgagaa ccaaatttat tccttcagaa aaaccctctg tggagcttta
     3721 tgcgtcttgg actcttcttc ctagattaag gtttgcattc cctcctgtca ggtacaagac
     3781 gatgaaagcc gtcattgatc ctcgctgctg agtgacaggg agaagcagca ccaccccgcg
     3841 gctcttctct gatgttgtaa ctcagtgtgg aagtctctct gggctcttag catgggtgtt
     3901 ctttacctag tggagcagtt aagcagatga agccacttag agaagctggt cgtggaagga
     3961 gagatccact gaggctagca gacatgtgga gccagaaacc agatcggcaa atggaggaac
     4021 ctcggagttg actggaagga tctccgtcgg tttcacgagg ctgtaagtag tagtggtttt
     4081 agtgatgcgt gatttgatct ggtatgaagt tccgtggcaa agctgctgtt ttctaaaagc
     4141 cattcttagc tcaaaccaac ccttaagaga agtttcggca gattgtgtcg gcagtattga
     4201 aagacatcta gaaaaagctg ctgattgaat tggttgtggg aatggagttt ggtgacattt
     4261 gtaatttaat acactcattg ctttttatgg attgtggtat tgtctgactt tactatgatt
     4321 ccttcagcag aaaagtaact cttgtgcata tattgaagtg tttttccagc tatgaattct
     4381 ttagggtaga gatttattta ccaaatgtga attcttttga ggaagtatga agttttgtag
     4441 aaattgactg tgaaatgtca gagaaaaata aaagtcactt acttgaaaac ta
//
LOCUS       XM_032620136            4062 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X9, mRNA.
ACCESSION   XM_032620136
VERSION     XM_032620136.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4062
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4062
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747631"
     CDS             416..1381
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X2"
                     /protein_id="XP_032476027.1"
                     /db_xref="GeneID:116747631"
                     /translation="MQIRCRCGSRVHRFPQINHMTALRGSSSSQLQSWSVQPSFEVIS
                     AQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSYTKIAPHPGKRGLSLSPEERG
                     EGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPPSTKLAEDSALQGVPCLVAGG
                     SPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGMESNSPLSPLSASYSSPLWAA
                     EHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLK
                     EQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEAFSDQPDI"
     misc_feature    <527..1309
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 gaggacatgc tgagcgcctt aggctggagc cgagaagaca ggccaaggcc gagcgccaag
       61 cctgcgagcg gtgccttccc aacgctggcc cccatggttg tcatgaagaa cgtgctggtc
      121 aaacaggtca acccttatgg catgagtgag cagggggaca gcctgaagtt ctgctcttga
      181 ctgacctgga cgaggctgat ctcttctttg aaagacccct gatttttgta tctcctctga
      241 cgggggagtg tttgctaggc ccagcattgc ttgcttatgg acatccagag tgtatttgaa
      301 caccaagagg gctccagaat ggactctcca ggtcatgcca gcctttgcac aggagatgaa
      361 ctgtagttga acttggccag gagttcctaa gcaggtatcc aagaagctgg aatgtatgca
      421 aatcaggtgc cggtgtggga gcagagtcca tcgctttcct cagataaatc acatgactgc
      481 actaaggggc agcagctcat cccagctcca gtcgtggtct gtgcagccct cctttgaagt
      541 gatctcagca cagccccagc tcctattcct tcatccacct gtaccgtctc ctgtcagccc
      601 atgtcacgct ggtgagaaaa agtcggactc caggaactac ttgcccattc tcaattctta
      661 caccaaaata gccccacacc caggcaaaag gggcctctcc ctcagcccag aagaaagagg
      721 agaaggtgga atgcagaaga agatctgtac tgagagactt gggccaagcc tgtcttctag
      781 tgagccgacc aagactggtg ctggcccacc cgggcccctg actccagcgc cccccagcac
      841 caagcttgcc gaggactcag ctcttcaggg tgtgccctgc ctggtggcag gtgggagtcc
      901 acagacgctt cagccagtgt ccagcagcca tgtggctaaa gctcccagcc tgacctttgc
      961 ttcccccgcc agccctgtct gtgcgtcaga cagtaccctg cacgggatgg agagcaactc
     1021 cccgctgtcc ccactgtcag ctagttacag ctcccctctg tgggctgcag agcacctctg
     1081 ccgcagccca gatagctttt cagagcagcg gcagagcaag cacaggcgct ttcagaatac
     1141 cctagtagtc ctacacaaat ctggtttgct ggagatcact ttgaaaacca aggagttgat
     1201 tcgtcagaac caggcaactc aggtggaact agaccagcta aaggagcaga cccggctatt
     1261 tatcgaggcc gccaagagca gggctcctca ggcttgggcc aagctgcagg cgtctttaac
     1321 atcagggtca ggtcatcctg gcagtgacct agaagcgttc tccgatcagc cagacatata
     1381 acatagaagg catattttcc tgttacttga gtggttcttt ttaactcttt taccgttatc
     1441 tgctcctgtt tcccaaagct tatgtaagag ctttcctttt aaacttaaac tgttcagcgg
     1501 ttcacttacg aagccacatg ccgatacctg gctgctgtct taacctgtgg tctgtgcaca
     1561 gtttaccttt gtctccgttc cactgaggac ctcagatttg ggtgtcctcg agtccctctt
     1621 ccttagcctg caggcacttc gatggatcac ggggcaaagc gggaaagatg cttgtgtggg
     1681 gcccctctag ctgtcacttc ccaccatccc actcactaac cgtgatcagg gatgcagtga
     1741 cgcagacaag catacagagt gacacctgtc aagccaggga gtaggtgaca taaggagccc
     1801 cccgtggatc ttcccttgaa ggtcttagtc acagaggaaa atatgagagg agggtgtttc
     1861 cattttacga ggcattgtgc catttgggag aaacctaaaa cgctctgggc acacattggt
     1921 ccttggatgc aagcacttaa tcacttaaag ctttgtttct ttaaactcga aagtcgaggg
     1981 gaaggggtag taccgttaac tcgtacactt taatcataag ccagatttct gtgaaactgg
     2041 taggtgaaat atttcagatt tgtaaagtat ggaatggatt taggaccatc tggagctaca
     2101 gttgatgaac tgcttttttg actcagagtc tgaagaaggg agaaatggct agcatctctt
     2161 ggttgagagc tggaagattc tgataattta tgcttttttc tctctctgtc tcttcttttg
     2221 aaacaatgca aaagaagatt ttcttatatg tgaaaatcct aaaagagagc ttcatggttc
     2281 ccgattgtgt aatacaagtc agccctctgc taccatcatt tttcccccct ttgtttttac
     2341 aaaagaggaa agaaatgatt attaagcttg aaaaactttg aattaaaatc atcataaaat
     2401 catcataaca tcataatgtt atgacattaa gtccacaaaa aattggaaaa cgtcatccat
     2461 tttctttcca catccagagt tttcatttgt cttacgtcac ggtgacgtgg agcagtcttc
     2521 tgtgtttctt tcgtgcattg gatttggctg caaagccaaa ggtgtagtgg gttatgtgaa
     2581 gtccgtctag aagtggagag cgttatgaga acttgcagat gatacacacc ctttcagcct
     2641 cattgtaaac tagatttcta agtcgtaaag ttgccagctt tttatcctcc catttaaaaa
     2701 tttcatcctc ttgaaaatct ttgtaccgat tactttagta agaaattctg tgtgaccaac
     2761 ttcatctttt ctgcaaggaa aatgttcttg aagttctacc aaggccagaa gctaatgctc
     2821 atgcttgctg ggtagttgta actctgaaca tagttttaaa attacaaggc ttcagattgc
     2881 ctgcattttg ttctcaaaca tgcacaattt agatacgacc aatttagaag taaacaactc
     2941 agtgaaacct ttagactctc ctggtaaatg cagaattatt acctgccatt tgctttctga
     3001 aagatttcac aaatcagagc aaacgtgtct ttaagcagac tctgctcctt ttactgtttt
     3061 tctcttggcc cacacccttt gcctcccctg aatctgtgtg gtgctgcagg aactctgcac
     3121 gccgtgctag gaagcttcct ttctggcaga gtgtttggca gcaaagctct agaaacaggt
     3181 gccttcagag cagcctgggc accagtcatg agtcttactg agtcaaaaat ctgaacacac
     3241 ttgctgagaa ccaaatttat tccttcagaa aaaccctctg tggagcttta tgcgtcttgg
     3301 actcttcttc ctagattaag gtttgcattc cctcctgtca ggtacaagac gatgaaagcc
     3361 gtcattgatc ctcgctgctg agtgacaggg agaagcagca ccaccccgcg gctcttctct
     3421 gatgttgtaa ctcagtgtgg aagtctctct gggctcttag catgggtgtt ctttacctag
     3481 tggagcagtt aagcagatga agccacttag agaagctggt cgtggaagga gagatccact
     3541 gaggctagca gacatgtgga gccagaaacc agatcggcaa atggaggaac ctcggagttg
     3601 actggaagga tctccgtcgg tttcacgagg ctgtaagtag tagtggtttt agtgatgcgt
     3661 gatttgatct ggtatgaagt tccgtggcaa agctgctgtt ttctaaaagc cattcttagc
     3721 tcaaaccaac ccttaagaga agtttcggca gattgtgtcg gcagtattga aagacatcta
     3781 gaaaaagctg ctgattgaat tggttgtggg aatggagttt ggtgacattt gtaatttaat
     3841 acactcattg ctttttatgg attgtggtat tgtctgactt tactatgatt ccttcagcag
     3901 aaaagtaact cttgtgcata tattgaagtg tttttccagc tatgaattct ttagggtaga
     3961 gatttattta ccaaatgtga attcttttga ggaagtatga agttttgtag aaattgactg
     4021 tgaaatgtca gagaaaaata aaagtcactt acttgaaaac ta
//
LOCUS       XM_032620146            6634 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X10, mRNA.
ACCESSION   XM_032620146
VERSION     XM_032620146.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6634
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6634
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747631"
     CDS             2988..3953
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X2"
                     /protein_id="XP_032476037.1"
                     /db_xref="GeneID:116747631"
                     /translation="MQIRCRCGSRVHRFPQINHMTALRGSSSSQLQSWSVQPSFEVIS
                     AQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSYTKIAPHPGKRGLSLSPEERG
                     EGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPPSTKLAEDSALQGVPCLVAGG
                     SPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGMESNSPLSPLSASYSSPLWAA
                     EHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLK
                     EQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEAFSDQPDI"
     misc_feature    <3099..3881
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 atacccgtac aacatggcgg ctgggcctgg agaaccaacc atagagacgc ccaccttccg
       61 cggagagcgc gccgacctct taaggacgcc cgcgcctccc tgataggcgt gccgacgtca
      121 tcttccggcg gagacgaaac agcgggcgcc gccaagggtc cttctaggag aacagcgagc
      181 agtctcggtg gtgccgggtc gtccgagccg tgtcacgtgg ctggcgaaag ccgtcgcgga
      241 ggctgggggg gaggagaaat gggcgggagg actgggggat agcttgagac ccgacgacaa
      301 cggggttgtc atggagccgc ggggccgggc tcgcgcatgc gccactctac tcgcgggtcg
      361 tccggtcgcg gagcagcgac ctcggtccta gtatccttac agctggcatc ccttggcgat
      421 tcagagggcc ttgttaaaat atcttgaagg gctcattgct ctcatacttt gcactgttag
      481 ccgagttctg gatctgcttt ggactagctg tgtatcactg gatcaaatct aggcttcttt
      541 ccaggaagtg gacgaccagg gcagtccaga tgaaaagagt actgatgaat gcacttccag
      601 cccagtaaaa catggagagg aagaacccat ccagagaggg ctctagaagg ctctcagcca
      661 aactgagcaa aggcccagag atgaaaaaag tgtctcgtca actcggcatg gcagctgctg
      721 agtcagataa ggactctgga ttttcagatg ggagctctga atgcctgagc tcggcagagc
      781 agatggagtc tgaggacatg ctgagcgcct taggctggag ccgagaagac aggccaaggc
      841 cgagcgccaa gcctgcgagc ggtgccttcc caacgctggc ccccatggtt gtcatgaaga
      901 acgtgctggt caaacaggtg aggaggactg agctctcata acttctttgc acgccagagt
      961 ttctgagctt cctgtgcaca gagcttctcc ctctctgcca aggagagatg tgagaagcag
     1021 accaccggca ccacaccaac acgtgcttct gtgctgggaa gaggatgtgt cctttcaact
     1081 actgacggtg tttgaaaaag gaatacaaga gtcatcacat gtgttcttat tttccagata
     1141 gtaagactgt tttatttctg tgtccctagt ttgtccaaag cgatctggaa tactttagtc
     1201 atgttaaacg gaaccaagca gaaatgtcct gacttctata gtgcatgcta agatatgaca
     1261 gaatttaagg tagaaacaag aggatctctt tttaatttga ctgggacttg tagaaatatt
     1321 tttttgagaa gtagaggcaa tttccctgtt tctcatgtta cattctgagc actttcttag
     1381 taaccagcca aagctatgtc attagtgaga aaggagctct ttggtttagg tatggctata
     1441 ccagcagact ccacccagca ttgttgagga attgaaaaat aaccctgttt caggctttct
     1501 tatataacta tgcaaattat gtgattattg tctagatacg aaagaaaaga agatttagat
     1561 aaaactctaa gctaagcccc agtgtttgga acaaacaact caatcctatg aacttgaaga
     1621 acatgtaacc ttaccctact ttgctctaaa ctagatcagt cctcgcatgg gtccgttgct
     1681 gcggctgctc aaagctattg aaggttgaaa tctggctgta tgttgttgac cttcccacct
     1741 taggtagaag aacgtggctc tagcctgaca ggagacctta atgtcttaac tattacctag
     1801 ttattgccaa acaacacaaa ctgattttca acaaggcaac ctggtgagtt tggaaaaaga
     1861 atttgcagat atttgcttgg cagatcacat ctcagctgga agcacagctc tcctcaccga
     1921 aatgaggcga gagaataaag acatgaaacg gagcccaaat gagattgtcc aggccccacc
     1981 ggtgcttctc agggcttcct gtctcctgct ctttcctccc tgccttcctc tctggccccc
     2041 tggttactct ttcttaggca tctttgttga ttgtcgtggg cgaggccggc agctccagag
     2101 ggctgttgca gggtgagtgg gcgggtccag cagagccatc tccttccgga cagagaccca
     2161 ctgggaaggc tgctggactt gatcaggaaa caggaggctt gggggcaggc tgacctgatg
     2221 gagcagtctc ggagttctgt tttttcacat atgctagaat ccagcacatt ccagatttaa
     2281 aagcattata cactttttaa aatctctgct tatcgcataa tgtcttaatt attgctgctt
     2341 ggttttagga tttttctttt gaggctctga ttccagttct gtcaccagac tgcgtgatct
     2401 tacacacaat tacttaatca ccgtgaactt tattttcttc atctttaaca tgaagctagg
     2461 attgattcta gagatcctat ccaagaccct atgattctga gatcctatcc aagtctaaag
     2521 tcttgtctgg tattccctca ggtgatctca gtaagaatgg taccttgtaa aatctaaatt
     2581 agaacaaata agctaagtat ctaagtgggc ataacaatag cattaggaag aatcatccag
     2641 tgaaatcagc ttgggaaagc aacgagttag gtattttctg gatccatttg ccttgtaggt
     2701 caacccttat ggcatgagtg agcaggggga cagcctgaag ttctgctctt gactgacctg
     2761 gacgaggctg atctcttctt tgaaagaccc ctgatttttg tatctcctct gacgggggag
     2821 tgtttgctag gcccagcatt gcttgcttat ggacatccag agtgtatttg aacaccaaga
     2881 gggctccaga atggactctc caggtcatgc cagcctttgc acaggagatg aactgtagtt
     2941 gaacttggcc aggagttcct aagcaggtat ccaagaagct ggaatgtatg caaatcaggt
     3001 gccggtgtgg gagcagagtc catcgctttc ctcagataaa tcacatgact gcactaaggg
     3061 gcagcagctc atcccagctc cagtcgtggt ctgtgcagcc ctcctttgaa gtgatctcag
     3121 cacagcccca gctcctattc cttcatccac ctgtaccgtc tcctgtcagc ccatgtcacg
     3181 ctggtgagaa aaagtcggac tccaggaact acttgcccat tctcaattct tacaccaaaa
     3241 tagccccaca cccaggcaaa aggggcctct ccctcagccc agaagaaaga ggagaaggtg
     3301 gaatgcagaa gaagatctgt actgagagac ttgggccaag cctgtcttct agtgagccga
     3361 ccaagactgg tgctggccca cccgggcccc tgactccagc gccccccagc accaagcttg
     3421 ccgaggactc agctcttcag ggtgtgccct gcctggtggc aggtgggagt ccacagacgc
     3481 ttcagccagt gtccagcagc catgtggcta aagctcccag cctgaccttt gcttcccccg
     3541 ccagccctgt ctgtgcgtca gacagtaccc tgcacgggat ggagagcaac tccccgctgt
     3601 ccccactgtc agctagttac agctcccctc tgtgggctgc agagcacctc tgccgcagcc
     3661 cagatagctt ttcagagcag cggcagagca agcacaggcg ctttcagaat accctagtag
     3721 tcctacacaa atctggtttg ctggagatca ctttgaaaac caaggagttg attcgtcaga
     3781 accaggcaac tcaggtggaa ctagaccagc taaaggagca gacccggcta tttatcgagg
     3841 ccgccaagag cagggctcct caggcttggg ccaagctgca ggcgtcttta acatcagggt
     3901 caggtcatcc tggcagtgac ctagaagcgt tctccgatca gccagacata taacatagaa
     3961 ggcatatttt cctgttactt gagtggttct ttttaactct tttaccgtta tctgctcctg
     4021 tttcccaaag cttatgtaag agctttcctt ttaaacttaa actgttcagc ggttcactta
     4081 cgaagccaca tgccgatacc tggctgctgt cttaacctgt ggtctgtgca cagtttacct
     4141 ttgtctccgt tccactgagg acctcagatt tgggtgtcct cgagtccctc ttccttagcc
     4201 tgcaggcact tcgatggatc acggggcaaa gcgggaaaga tgcttgtgtg gggcccctct
     4261 agctgtcact tcccaccatc ccactcacta accgtgatca gggatgcagt gacgcagaca
     4321 agcatacaga gtgacacctg tcaagccagg gagtaggtga cataaggagc cccccgtgga
     4381 tcttcccttg aaggtcttag tcacagagga aaatatgaga ggagggtgtt tccattttac
     4441 gaggcattgt gccatttggg agaaacctaa aacgctctgg gcacacattg gtccttggat
     4501 gcaagcactt aatcacttaa agctttgttt ctttaaactc gaaagtcgag gggaaggggt
     4561 agtaccgtta actcgtacac tttaatcata agccagattt ctgtgaaact ggtaggtgaa
     4621 atatttcaga tttgtaaagt atggaatgga tttaggacca tctggagcta cagttgatga
     4681 actgcttttt tgactcagag tctgaagaag ggagaaatgg ctagcatctc ttggttgaga
     4741 gctggaagat tctgataatt tatgcttttt tctctctctg tctcttcttt tgaaacaatg
     4801 caaaagaaga ttttcttata tgtgaaaatc ctaaaagaga gcttcatggt tcccgattgt
     4861 gtaatacaag tcagccctct gctaccatca tttttccccc ctttgttttt acaaaagagg
     4921 aaagaaatga ttattaagct tgaaaaactt tgaattaaaa tcatcataaa atcatcataa
     4981 catcataatg ttatgacatt aagtccacaa aaaattggaa aacgtcatcc attttctttc
     5041 cacatccaga gttttcattt gtcttacgtc acggtgacgt ggagcagtct tctgtgtttc
     5101 tttcgtgcat tggatttggc tgcaaagcca aaggtgtagt gggttatgtg aagtccgtct
     5161 agaagtggag agcgttatga gaacttgcag atgatacaca ccctttcagc ctcattgtaa
     5221 actagatttc taagtcgtaa agttgccagc tttttatcct cccatttaaa aatttcatcc
     5281 tcttgaaaat ctttgtaccg attactttag taagaaattc tgtgtgacca acttcatctt
     5341 ttctgcaagg aaaatgttct tgaagttcta ccaaggccag aagctaatgc tcatgcttgc
     5401 tgggtagttg taactctgaa catagtttta aaattacaag gcttcagatt gcctgcattt
     5461 tgttctcaaa catgcacaat ttagatacga ccaatttaga agtaaacaac tcagtgaaac
     5521 ctttagactc tcctggtaaa tgcagaatta ttacctgcca tttgctttct gaaagatttc
     5581 acaaatcaga gcaaacgtgt ctttaagcag actctgctcc ttttactgtt tttctcttgg
     5641 cccacaccct ttgcctcccc tgaatctgtg tggtgctgca ggaactctgc acgccgtgct
     5701 aggaagcttc ctttctggca gagtgtttgg cagcaaagct ctagaaacag gtgccttcag
     5761 agcagcctgg gcaccagtca tgagtcttac tgagtcaaaa atctgaacac acttgctgag
     5821 aaccaaattt attccttcag aaaaaccctc tgtggagctt tatgcgtctt ggactcttct
     5881 tcctagatta aggtttgcat tccctcctgt caggtacaag acgatgaaag ccgtcattga
     5941 tcctcgctgc tgagtgacag ggagaagcag caccaccccg cggctcttct ctgatgttgt
     6001 aactcagtgt ggaagtctct ctgggctctt agcatgggtg ttctttacct agtggagcag
     6061 ttaagcagat gaagccactt agagaagctg gtcgtggaag gagagatcca ctgaggctag
     6121 cagacatgtg gagccagaaa ccagatcggc aaatggagga acctcggagt tgactggaag
     6181 gatctccgtc ggtttcacga ggctgtaagt agtagtggtt ttagtgatgc gtgatttgat
     6241 ctggtatgaa gttccgtggc aaagctgctg ttttctaaaa gccattctta gctcaaacca
     6301 acccttaaga gaagtttcgg cagattgtgt cggcagtatt gaaagacatc tagaaaaagc
     6361 tgctgattga attggttgtg ggaatggagt ttggtgacat ttgtaattta atacactcat
     6421 tgctttttat ggattgtggt attgtctgac tttactatga ttccttcagc agaaaagtaa
     6481 ctcttgtgca tatattgaag tgtttttcca gctatgaatt ctttagggta gagatttatt
     6541 taccaaatgt gaattctttt gaggaagtat gaagttttgt agaaattgac tgtgaaatgt
     6601 cagagaaaaa taaaagtcac ttacttgaaa acta
//
LOCUS       XM_032620153            6466 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus CLOCK interacting pacemaker (CIPC),
            transcript variant X11, mRNA.
ACCESSION   XM_032620153
VERSION     XM_032620153.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6466
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6466
                     /gene="CIPC"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747631"
     CDS             2820..3785
                     /gene="CIPC"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker isoform X2"
                     /protein_id="XP_032476044.1"
                     /db_xref="GeneID:116747631"
                     /translation="MQIRCRCGSRVHRFPQINHMTALRGSSSSQLQSWSVQPSFEVIS
                     AQPQLLFLHPPVPSPVSPCHAGEKKSDSRNYLPILNSYTKIAPHPGKRGLSLSPEERG
                     EGGMQKKICTERLGPSLSSSEPTKTGAGPPGPLTPAPPSTKLAEDSALQGVPCLVAGG
                     SPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGMESNSPLSPLSASYSSPLWAA
                     EHLCRSPDSFSEQRQSKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLK
                     EQTRLFIEAAKSRAPQAWAKLQASLTSGSGHPGSDLEAFSDQPDI"
     misc_feature    <2931..3713
                     /gene="CIPC"
                     /note="Clock interacting protein circadian; Region: CiPC;
                     pfam15800"
                     /db_xref="CDD:464879"
ORIGIN      
        1 atacccgtac aacatggcgg ctgggcctgg agaaccaacc atagagacgc ccaccttccg
       61 cggagagcgc gccgacctct taaggacgcc cgcgcctccc tgataggcgt gccgacgtca
      121 tcttccggcg gagacgaaac agcgggcgcc gccaagggtc cttctaggag aacagcgagc
      181 agtctcggtg gtgccgggtc gtccgagccg tgtcacgtgg ctggcgaaag ccgtcgcgga
      241 ggctgggggg gaggagaaat gggcgggagg actgggggat agcttgagac ccgacgacaa
      301 cggggttgtc atggagccgc ggggccgggc tcgcgcatgc gccactctac tcgcgggtcg
      361 tccggtcgcg gagcagcgac ctcggtccta gggcagtcca gatgaaaaga gtactgatga
      421 atgcacttcc agcccagtaa aacatggaga ggaagaaccc atccagagag ggctctagaa
      481 ggctctcagc caaactgagc aaaggcccag agatgaaaaa agtgtctcgt caactcggca
      541 tggcagctgc tgagtcagat aaggactctg gattttcaga tgggagctct gaatgcctga
      601 gctcggcaga gcagatggag tctgaggaca tgctgagcgc cttaggctgg agccgagaag
      661 acaggccaag gccgagcgcc aagcctgcga gcggtgcctt cccaacgctg gcccccatgg
      721 ttgtcatgaa gaacgtgctg gtcaaacagg tgaggaggac tgagctctca taacttcttt
      781 gcacgccaga gtttctgagc ttcctgtgca cagagcttct ccctctctgc caaggagaga
      841 tgtgagaagc agaccaccgg caccacacca acacgtgctt ctgtgctggg aagaggatgt
      901 gtcctttcaa ctactgacgg tgtttgaaaa aggaatacaa gagtcatcac atgtgttctt
      961 attttccaga tagtaagact gttttatttc tgtgtcccta gtttgtccaa agcgatctgg
     1021 aatactttag tcatgttaaa cggaaccaag cagaaatgtc ctgacttcta tagtgcatgc
     1081 taagatatga cagaatttaa ggtagaaaca agaggatctc tttttaattt gactgggact
     1141 tgtagaaata tttttttgag aagtagaggc aatttccctg tttctcatgt tacattctga
     1201 gcactttctt agtaaccagc caaagctatg tcattagtga gaaaggagct ctttggttta
     1261 ggtatggcta taccagcaga ctccacccag cattgttgag gaattgaaaa ataaccctgt
     1321 ttcaggcttt cttatataac tatgcaaatt atgtgattat tgtctagata cgaaagaaaa
     1381 gaagatttag ataaaactct aagctaagcc ccagtgtttg gaacaaacaa ctcaatccta
     1441 tgaacttgaa gaacatgtaa ccttacccta ctttgctcta aactagatca gtcctcgcat
     1501 gggtccgttg ctgcggctgc tcaaagctat tgaaggttga aatctggctg tatgttgttg
     1561 accttcccac cttaggtaga agaacgtggc tctagcctga caggagacct taatgtctta
     1621 actattacct agttattgcc aaacaacaca aactgatttt caacaaggca acctggtgag
     1681 tttggaaaaa gaatttgcag atatttgctt ggcagatcac atctcagctg gaagcacagc
     1741 tctcctcacc gaaatgaggc gagagaataa agacatgaaa cggagcccaa atgagattgt
     1801 ccaggcccca ccggtgcttc tcagggcttc ctgtctcctg ctctttcctc cctgccttcc
     1861 tctctggccc cctggttact ctttcttagg catctttgtt gattgtcgtg ggcgaggccg
     1921 gcagctccag agggctgttg cagggtgagt gggcgggtcc agcagagcca tctccttccg
     1981 gacagagacc cactgggaag gctgctggac ttgatcagga aacaggaggc ttgggggcag
     2041 gctgacctga tggagcagtc tcggagttct gttttttcac atatgctaga atccagcaca
     2101 ttccagattt aaaagcatta tacacttttt aaaatctctg cttatcgcat aatgtcttaa
     2161 ttattgctgc ttggttttag gatttttctt ttgaggctct gattccagtt ctgtcaccag
     2221 actgcgtgat cttacacaca attacttaat caccgtgaac tttattttct tcatctttaa
     2281 catgaagcta ggattgattc tagagatcct atccaagacc ctatgattct gagatcctat
     2341 ccaagtctaa agtcttgtct ggtattccct caggtgatct cagtaagaat ggtaccttgt
     2401 aaaatctaaa ttagaacaaa taagctaagt atctaagtgg gcataacaat agcattagga
     2461 agaatcatcc agtgaaatca gcttgggaaa gcaacgagtt aggtattttc tggatccatt
     2521 tgccttgtag gtcaaccctt atggcatgag tgagcagggg gacagcctga agttctgctc
     2581 ttgactgacc tggacgaggc tgatctcttc tttgaaagac ccctgatttt tgtatctcct
     2641 ctgacggggg agtgtttgct aggcccagca ttgcttgctt atggacatcc agagtgtatt
     2701 tgaacaccaa gagggctcca gaatggactc tccaggtcat gccagccttt gcacaggaga
     2761 tgaactgtag ttgaacttgg ccaggagttc ctaagcaggt atccaagaag ctggaatgta
     2821 tgcaaatcag gtgccggtgt gggagcagag tccatcgctt tcctcagata aatcacatga
     2881 ctgcactaag gggcagcagc tcatcccagc tccagtcgtg gtctgtgcag ccctcctttg
     2941 aagtgatctc agcacagccc cagctcctat tccttcatcc acctgtaccg tctcctgtca
     3001 gcccatgtca cgctggtgag aaaaagtcgg actccaggaa ctacttgccc attctcaatt
     3061 cttacaccaa aatagcccca cacccaggca aaaggggcct ctccctcagc ccagaagaaa
     3121 gaggagaagg tggaatgcag aagaagatct gtactgagag acttgggcca agcctgtctt
     3181 ctagtgagcc gaccaagact ggtgctggcc cacccgggcc cctgactcca gcgcccccca
     3241 gcaccaagct tgccgaggac tcagctcttc agggtgtgcc ctgcctggtg gcaggtggga
     3301 gtccacagac gcttcagcca gtgtccagca gccatgtggc taaagctccc agcctgacct
     3361 ttgcttcccc cgccagccct gtctgtgcgt cagacagtac cctgcacggg atggagagca
     3421 actccccgct gtccccactg tcagctagtt acagctcccc tctgtgggct gcagagcacc
     3481 tctgccgcag cccagatagc ttttcagagc agcggcagag caagcacagg cgctttcaga
     3541 ataccctagt agtcctacac aaatctggtt tgctggagat cactttgaaa accaaggagt
     3601 tgattcgtca gaaccaggca actcaggtgg aactagacca gctaaaggag cagacccggc
     3661 tatttatcga ggccgccaag agcagggctc ctcaggcttg ggccaagctg caggcgtctt
     3721 taacatcagg gtcaggtcat cctggcagtg acctagaagc gttctccgat cagccagaca
     3781 tataacatag aaggcatatt ttcctgttac ttgagtggtt ctttttaact cttttaccgt
     3841 tatctgctcc tgtttcccaa agcttatgta agagctttcc ttttaaactt aaactgttca
     3901 gcggttcact tacgaagcca catgccgata cctggctgct gtcttaacct gtggtctgtg
     3961 cacagtttac ctttgtctcc gttccactga ggacctcaga tttgggtgtc ctcgagtccc
     4021 tcttccttag cctgcaggca cttcgatgga tcacggggca aagcgggaaa gatgcttgtg
     4081 tggggcccct ctagctgtca cttcccacca tcccactcac taaccgtgat cagggatgca
     4141 gtgacgcaga caagcataca gagtgacacc tgtcaagcca gggagtaggt gacataagga
     4201 gccccccgtg gatcttccct tgaaggtctt agtcacagag gaaaatatga gaggagggtg
     4261 tttccatttt acgaggcatt gtgccatttg ggagaaacct aaaacgctct gggcacacat
     4321 tggtccttgg atgcaagcac ttaatcactt aaagctttgt ttctttaaac tcgaaagtcg
     4381 aggggaaggg gtagtaccgt taactcgtac actttaatca taagccagat ttctgtgaaa
     4441 ctggtaggtg aaatatttca gatttgtaaa gtatggaatg gatttaggac catctggagc
     4501 tacagttgat gaactgcttt tttgactcag agtctgaaga agggagaaat ggctagcatc
     4561 tcttggttga gagctggaag attctgataa tttatgcttt tttctctctc tgtctcttct
     4621 tttgaaacaa tgcaaaagaa gattttctta tatgtgaaaa tcctaaaaga gagcttcatg
     4681 gttcccgatt gtgtaataca agtcagccct ctgctaccat catttttccc ccctttgttt
     4741 ttacaaaaga ggaaagaaat gattattaag cttgaaaaac tttgaattaa aatcatcata
     4801 aaatcatcat aacatcataa tgttatgaca ttaagtccac aaaaaattgg aaaacgtcat
     4861 ccattttctt tccacatcca gagttttcat ttgtcttacg tcacggtgac gtggagcagt
     4921 cttctgtgtt tctttcgtgc attggatttg gctgcaaagc caaaggtgta gtgggttatg
     4981 tgaagtccgt ctagaagtgg agagcgttat gagaacttgc agatgataca caccctttca
     5041 gcctcattgt aaactagatt tctaagtcgt aaagttgcca gctttttatc ctcccattta
     5101 aaaatttcat cctcttgaaa atctttgtac cgattacttt agtaagaaat tctgtgtgac
     5161 caacttcatc ttttctgcaa ggaaaatgtt cttgaagttc taccaaggcc agaagctaat
     5221 gctcatgctt gctgggtagt tgtaactctg aacatagttt taaaattaca aggcttcaga
     5281 ttgcctgcat tttgttctca aacatgcaca atttagatac gaccaattta gaagtaaaca
     5341 actcagtgaa acctttagac tctcctggta aatgcagaat tattacctgc catttgcttt
     5401 ctgaaagatt tcacaaatca gagcaaacgt gtctttaagc agactctgct ccttttactg
     5461 tttttctctt ggcccacacc ctttgcctcc cctgaatctg tgtggtgctg caggaactct
     5521 gcacgccgtg ctaggaagct tcctttctgg cagagtgttt ggcagcaaag ctctagaaac
     5581 aggtgccttc agagcagcct gggcaccagt catgagtctt actgagtcaa aaatctgaac
     5641 acacttgctg agaaccaaat ttattccttc agaaaaaccc tctgtggagc tttatgcgtc
     5701 ttggactctt cttcctagat taaggtttgc attccctcct gtcaggtaca agacgatgaa
     5761 agccgtcatt gatcctcgct gctgagtgac agggagaagc agcaccaccc cgcggctctt
     5821 ctctgatgtt gtaactcagt gtggaagtct ctctgggctc ttagcatggg tgttctttac
     5881 ctagtggagc agttaagcag atgaagccac ttagagaagc tggtcgtgga aggagagatc
     5941 cactgaggct agcagacatg tggagccaga aaccagatcg gcaaatggag gaacctcgga
     6001 gttgactgga aggatctccg tcggtttcac gaggctgtaa gtagtagtgg ttttagtgat
     6061 gcgtgatttg atctggtatg aagttccgtg gcaaagctgc tgttttctaa aagccattct
     6121 tagctcaaac caacccttaa gagaagtttc ggcagattgt gtcggcagta ttgaaagaca
     6181 tctagaaaaa gctgctgatt gaattggttg tgggaatgga gtttggtgac atttgtaatt
     6241 taatacactc attgcttttt atggattgtg gtattgtctg actttactat gattccttca
     6301 gcagaaaagt aactcttgtg catatattga agtgtttttc cagctatgaa ttctttaggg
     6361 tagagattta tttaccaaat gtgaattctt ttgaggaagt atgaagtttt gtagaaattg
     6421 actgtgaaat gtcagagaaa aataaaagtc acttacttga aaacta
//
LOCUS       XM_032620164            4015 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FA complementation group I (FANCI),
            transcript variant X1, mRNA.
ACCESSION   XM_032620164
VERSION     XM_032620164.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4015
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4015
                     /gene="FANCI"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747684"
     CDS             20..3991
                     /gene="FANCI"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X1"
                     /protein_id="XP_032476055.1"
                     /db_xref="GeneID:116747684"
                     /translation="MDQKILSLAAEKTADRLQKFLQTLKEDDLANLLQNQAVKGKAAG
                     ALLRAIFKGFPCSEEAGALRRLKIYSCCVQLLESGDLQKEVASEIIGLLMLEVHNFPG
                     ALLVELASEFVDAVKQGNLTNGKSLELLPIIFTALATKKENLAYGKGELSGEECKKQL
                     INTLCSGRWDHQYVIQLTSMFKDVPLTAEEVETVVEKVLTMFSKLNLQEIPPLVYQLL
                     VLSSKGSRKKVLEGIITFFNKLDTQHSEEQNSDELLDFVTVPSGELRHVEGTIILHIV
                     FAIKLDCELGRELLKLLKAGQQGDFSSNICPFSIALFLSVTRIQRFEEQVFDLLKSLV
                     IKSFKDLQLLQGSKFLQNLVPHRCCVSTMILEVVKNSVHSWDHVTQGLVELGFILMDS
                     YGPKKILDGKTIEASSGLSRMPNQHACKLGANILLETFKIHEMIRQEILEQVLNRVVT
                     RGSSSITHFIDLLSDIIMYSPLVLQSCSSKVTETFDYLSFLPLQTVQGLMKAVLPLLK
                     VSLSIRDSLILVLRKAMFASQLDARKSAVAGFLLLLKNFKVLGSLSSSQCSQSIGISQ
                     VHVDVHSRYNSVANETFCLEIMDSLRRCLGQQADVRLMLYEGFYDVLRRNSQLANSVM
                     QTLLSQLKQFYEPEPDMLPPLKLEACILTQGDQISLQEPLDCLLCCIQHCLAWYKSRV
                     MPLQQKEEEEEEEGFYQDLDDMLESITSRMIKSELEDFELDKSADFSQSTGIGIKNNI
                     CAFLVMGVCEVLIEYNFSVSNFSKNKFEEVLSLFMCYKELSDILNEKAGKGKTKMASK
                     TNDSFLSMKFVSDLLTALFRDSTQSHEESLSVLRSSNEFMRYAVSVALQKVQQLKEMG
                     HVSGPDGRNPEKVFQNLCDITRVLLWRYTSIPTSVEESGKKEKGKSISLLCLEGLQKI
                     FSVVQQFYQPKIHQFLRALDATDKEEEVEVSVTQRAAFQIRQFQRSLLNILSSQEEDF
                     NSKEALLLVTVLSNLSKLLEPSSTQFVQMLSWTTKICKENSWEDASFCKGLMNLLFSL
                     HVLCKSPVTLLRDLSQDIHGHLGDIDQDVEVEKTNHFAVVNLRTAAPTVCLLLLSQAE
                     KVLEEVDWLITKLKGQVSQEIIPEASSQATLPNHPIEKAIIIQLGTLLTFFHELVQTA
                     LPSGSCVDTLLKDLCKMYTILTALVRYYLQVCQHSRGIPKNMEKLVKLSGSHLTPLCY
                     SFISYIQNKKSKSLKHAGEKKKEKTAAGPTAVARALRETKPIPNLIFAIEQYEKFLIH
                     LSKRSKVNLMQHIKLSTSRDFKIKGNILDMVLQEDEDEDEEGTASEHEGQNKEPAKKK
                     RKK"
     misc_feature    20..178
                     /gene="FANCI"
                     /note="FANCI solenoid 1 cap; Region: FANCI_S1-cap;
                     pfam14674"
                     /db_xref="CDD:434117"
     misc_feature    146..3877
                     /gene="FANCI"
                     /note="Fanconi anemia I protein; Region: FANCI; cd11720"
                     /db_xref="CDD:212594"
     misc_feature    order(161..163,173..175,266..271,278..280,287..292,
                     299..304,311..313,401..403,410..412,563..568,662..664,
                     674..676,836..838,848..850,857..859,1145..1147,1343..1345,
                     1355..1357,1364..1366,1457..1459,1466..1468,1475..1480,
                     1487..1489,1583..1588,1595..1597,1760..1765,1772..1777,
                     1784..1789,1793..1798,1865..1867,1871..1885,1892..1894,
                     1901..1903,2051..2053,2063..2065)
                     /gene="FANCI"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212594"
     misc_feature    order(878..880,890..892,899..901,1010..1012,1025..1027,
                     1034..1036,2942..2944,3080..3082,3236..3238,3284..3286,
                     3323..3325,3491..3493,3503..3505,3533..3535,3791..3793,
                     3812..3817)
                     /gene="FANCI"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212594"
ORIGIN      
        1 tttcttgata tgtgcaacaa tggaccagaa aattttatct ctagcagcag aaaaaacagc
       61 agacagactg caaaaatttc ttcaaaccct gaaagaagat gatctggcta atctccttca
      121 gaatcaggca gtgaaaggaa aagctgctgg agcactcctg agagccatct tcaaaggttt
      181 cccctgttct gaagaagctg gagctcttag gagacttaag atatacagtt gttgtgtcca
      241 attgttggaa tcaggggatt tgcagaaaga agtagcatct gaaatcatag gattactaat
      301 gctggaggtt cacaattttc caggagcatt attggttgaa ttagccagtg agtttgttga
      361 tgctgtcaaa cagggcaacc taacgaatgg aaaatctttg gagctattac ccatcatttt
      421 cactgccctt gctaccaaaa aggagaatct agcttatgga aaaggtgaac taagtgggga
      481 agaatgtaag aagcagttga ttaacaccct ctgttctggc agatgggatc atcaatatgt
      541 aatccaactc acctccatgt tcaaggatgt ccctctgact gcagaagagg tggaaactgt
      601 ggtggaaaaa gtgttgacga tgttctccaa attgaatctt caagaaatac cacccttggt
      661 ctatcagctt ctggttctct cctcaaaggg aagccggaag aaggttttgg aaggaatcat
      721 cactttcttc aacaagctag atacgcagca cagtgaggaa cagaatagtg atgagctgtt
      781 ggattttgtt actgtaccat caggtgaact tcgtcacgtg gaaggcacca ttattctaca
      841 cattgtgttt gccatcaagt tggactgtga actaggcaga gaactactga aactcctgaa
      901 ggcaggacag caaggagatt tcagtagtaa tatatgtcct ttcagcattg ccctcttcct
      961 ctctgtaaca agaatacaga gatttgagga acaggtattt gaccttttaa agtctttggt
     1021 tataaaaagc tttaaggatc ttcagcttct ccaaggctca aaatttcttc agaatctagt
     1081 tcctcataga tgttgtgttt caaccatgat cttggaagtg gtaaagaata gtgttcacag
     1141 ttgggatcat gttactcagg gtctggtaga acttggcttc attttaatgg attcctatgg
     1201 gccaaagaag attcttgatg gaaaaactat tgaagccagc tcaggtcttt ctagaatgcc
     1261 aaaccagcat gcatgtaagc tgggagctaa tatcctgttg gaaactttca agatccatga
     1321 gatgatcaga caagaaattc tggagcaggt cctcaacagg gttgttacca gaggatcctc
     1381 ctccatcact catttcatag acctgctttc agatatcatc atgtattcac ccttagttct
     1441 tcaaagttgt tcttctaaag tcacagaaac ttttgactat ttgtcctttc tgccccttca
     1501 aaccgtacaa gggctgatga aggcagtgct gccccttcta aaagtcagct tgtcaataag
     1561 agactccttg atacttgtcc ttcggaaagc tatgtttgcc agccagcttg atgcccgaaa
     1621 atctgcagtt gctgggtttt tgctgctcct gaagaacttt aaagttttag gcagcttgtc
     1681 gtcttctcag tgcagtcagt ctattggtat tagccaggtc catgtggatg tccatagccg
     1741 ttacaattct gtcgccaatg aaaccttttg ccttgagatc atggatagtt tgaggagatg
     1801 cttaggccag caggctgatg ttcgactcat gctttatgag gggttctatg atgtccttcg
     1861 aagaaattct cagctggcta attcagtcat gcaaactctg ctctcacagt taaaacaatt
     1921 ctatgagccg gaacctgata tgctgccacc tctgaaatta gaagcttgta ttctgaccca
     1981 aggagatcag atctctctac aggaaccact ggattgtctg ctttgttgta ttcaacactg
     2041 tttggcctgg tataagagta gagtgatgcc cctacagcag aaagaagagg aggaagaaga
     2101 agagggattc taccaagact tagatgatat gttggagtct attactagta gaatgattaa
     2161 gagtgaacta gaggactttg aactggacaa atcagcagat ttttctcaga gcactggtat
     2221 tggcatcaaa aacaatatct gtgcttttct tgttatggga gtttgtgagg ttctaataga
     2281 atataatttc tccgtaagta atttcagtaa gaataagttt gaggaggttc tgagcttatt
     2341 tatgtgttac aaggaactct ctgacatcct taatgaaaaa gctggtaaag gcaaaactaa
     2401 aatggccagc aaaacaaatg atagtttttt gtccatgaaa tttgtgtctg atcttctcac
     2461 cgctcttttc agggacagta cccaaagtca tgaagagagc ctgtctgttc taaggtccag
     2521 caatgagttt atgcgctatg cagtgagtgt ggctctgcag aaggtacagc agctaaagga
     2581 aatggggcat gtgagtggcc ctgatggcag aaacccagag aaggtctttc agaacctctg
     2641 tgacataact cgggtcttgc tttggagata cacttcaatt cctacttcag tggaagagtc
     2701 gggaaagaaa gagaaaggaa agagcatctc gctgctgtgc ttggagggtt tgcagaaaat
     2761 attcagtgtc gtgcaacagt tctaccagcc caagattcat cagtttctca gggctctgga
     2821 tgccacagat aaggaggaag aggtggaagt cagtgtcact caaagagcag cattccagat
     2881 ccggcagttt cagaggtcct tgttgaatat acttagcagc caagaagaag actttaacag
     2941 caaagaagcc ctcctactcg ttactgttct ctccaacttg tccaagctgc tggagccctc
     3001 ctccactcag tttgtgcaga tgttatcctg gacaactaag atttgcaagg aaaacagctg
     3061 ggaggatgcc tcattttgca agggcttgat gaatttgctc ttcagcctcc atgttttgtg
     3121 taagagtcct gtgaccctgc tgcgtgactt gtcccaggat atccatggac atcttggaga
     3181 catagaccag gatgtagaag tggagaaaac aaaccacttt gcagtggtga atttgagaac
     3241 agctgcccct actgtctgtt tacttcttct gagtcaggct gagaaggtcc tagaagaagt
     3301 ggactggtta atcaccaagc ttaagggaca agtgagccaa gaaattatac cagaagcctc
     3361 ttctcaggca accctaccaa atcatcccat tgagaaagcc atcatcatac aattgggaac
     3421 tctgcttaca tttttccacg agctggtgca gacggccctg ccatcaggca gctgtgtgga
     3481 caccttatta aaggaccttt gcaaaatgta caccattctt acagcgcttg tcagatatta
     3541 tctccaggtg tgtcagcact ccagaggaat tccgaaaaat atggagaagc tggtgaagct
     3601 gtcaggttcg cacctgaccc cgctatgcta ttctttcatt tcttacatac agaacaagaa
     3661 gagtaagagc ctaaaacatg caggagaaaa gaaaaaggag aaaaccgctg ctgggcccac
     3721 agctgtggcc agagctcttc gggaaaccaa gccaatccct aatctcatct ttgccattga
     3781 acagtatgaa aaatttctca tccacctttc taagaggtcc aaggtgaacc tgatgcagca
     3841 tataaagctc agcacctcac gagacttcaa gatcaaaggg aacatcctgg acatggttct
     3901 tcaagaggat gaggatgaag atgaagaggg cactgcatca gagcacgagg gacagaacaa
     3961 agaaccagcc aagaagaaaa ggaaaaaata aatgaaacgc ctgagttaat gtgaa
//
LOCUS       XM_032620174            4098 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FA complementation group I (FANCI),
            transcript variant X2, mRNA.
ACCESSION   XM_032620174
VERSION     XM_032620174.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4098
                     /gene="FANCI"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 28 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747684"
     CDS             100..4074
                     /gene="FANCI"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X2"
                     /protein_id="XP_032476065.1"
                     /db_xref="GeneID:116747684"
                     /translation="MDQKILSLAAEKTADRLQKFLQTLKEDDLANLLQNQAVKGKAAG
                     ALLRAIFKGFPCSEEAGALRRLKIYSCCVQLLESGDLQKEVASEIIGLLMLEVHNFPG
                     ALLVELASEFVDAVKQGNLTNGKSLELLPIIFTALATKKENLAYGKGELSGEECKKQL
                     INTLCSGRWDHQYVIQLTSMFKDVPLTAEEVETVVEKVLTMFSKLNLQEIPPLVYQLL
                     VLSSKGSRKKVLEGIITFFNKLDTQHSEEQNSDELLDFVTVPSGELRHVEGTIILHIV
                     FAIKLDCELGRELLKLLKAGQQGDFSSNICPFSIALFLSVTRIQRFEEQVFDLLKSLV
                     IKSFKDLQLLQGSKFLQNLVPHRCCVSTMILEVVKNSVHSWDHVTQGLVELGFILMDS
                     YGPKKILDGKTIEASSGLSRMPNQHACKLGANILLETFKIHEMIRQEILEQVLNRVVT
                     RGSSSITHFIDLLSDIIMYSPLVLQSCSSKVTETFDYLSFLPLQTVQGLMKAVLPLLK
                     VSLSIRDSLILVLRKAMFASQLDARKSAVAGFLLLLKNFKVLGSLSSSQCSQSIGISQ
                     VHVDVHSRYNSVANETFCLEIMDSLRRCLGQQADVRLMLYEGFYDVLRRNSQLANSVM
                     QTLLSQLKQFYEPEPDMLPPLKLEACILTQGDQISLQEPLDCLLCCIQHCLAWYKSRV
                     MPLQQKEEEEEEEGFYQDLDDMLESITSRMIKSELEDFELDKSADFSQSTGIGIKNNI
                     CAFLVMGVCEVLIEYNFSVSNFSKNKFEEVLSLFMCYKELSDILNEKAGKGKTKMASK
                     TNDSFLSMKFVSDLLTALFRDSTQSHEESLSVLRSSNEFMRYAVSVALQKVQQLKEMG
                     HVSGPDGRNPEKVFQNLCDITRVLLWRYTSIPTSVEESGKKEKGKSISLLCLEGLQKI
                     FSVVQQFYQPKIHQFLRALDATDKEEEVEVSVTQRAAFQIRQFQRSLLNILSSQEEDF
                     NSKEALLLVTVLSNLSKLLEPSSTQFVQMLSWTTKICKENSWEDASFCKGLMNLLFSL
                     HVLCKSPVTLLRDLSQDIHGHLGDIDQDVEVEKTNHFAVVNLRTAAPTVCLLLLSQAE
                     KVLEEVDWLITKLKGQVSQEIIPEEASSQATLPNHPIEKAIIIQLGTLLTFFHELVQT
                     ALPSGSCVDTLLKDLCKMYTILTALVRYYLQVCQHSRGIPKNMEKLVKLSGSHLTPLC
                     YSFISYIQNKKSKSLKHAGEKKKEKTAAGPTAVARALRETKPIPNLIFAIEQYEKFLI
                     HLSKRSKVNLMQHIKLSTSRDFKIKGNILDMVLQEDEDEDEEGTASEHEGQNKEPAKK
                     KRKK"
     misc_feature    100..258
                     /gene="FANCI"
                     /note="FANCI solenoid 1 cap; Region: FANCI_S1-cap;
                     pfam14674"
                     /db_xref="CDD:434117"
     misc_feature    226..3960
                     /gene="FANCI"
                     /note="Fanconi anemia I protein; Region: FANCI; cd11720"
                     /db_xref="CDD:212594"
     misc_feature    order(241..243,253..255,346..351,358..360,367..372,
                     379..384,391..393,481..483,490..492,643..648,742..744,
                     754..756,916..918,928..930,937..939,1225..1227,1423..1425,
                     1435..1437,1444..1446,1537..1539,1546..1548,1555..1560,
                     1567..1569,1663..1668,1675..1677,1840..1845,1852..1857,
                     1864..1869,1873..1878,1945..1947,1951..1965,1972..1974,
                     1981..1983,2131..2133,2143..2145)
                     /gene="FANCI"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212594"
     misc_feature    order(958..960,970..972,979..981,1090..1092,1105..1107,
                     1114..1116,3022..3024,3160..3162,3316..3318,3364..3366,
                     3403..3405,3574..3576,3586..3588,3616..3618,3874..3876,
                     3895..3900)
                     /gene="FANCI"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212594"
ORIGIN      
        1 ggaggcggga gctgctgctc ccggtaacgg aagttcggcg gcgttgggtt gagcggactt
       61 tttggaagct tttggaggag tttcttgata tgtgcaacaa tggaccagaa aattttatct
      121 ctagcagcag aaaaaacagc agacagactg caaaaatttc ttcaaaccct gaaagaagat
      181 gatctggcta atctccttca gaatcaggca gtgaaaggaa aagctgctgg agcactcctg
      241 agagccatct tcaaaggttt cccctgttct gaagaagctg gagctcttag gagacttaag
      301 atatacagtt gttgtgtcca attgttggaa tcaggggatt tgcagaaaga agtagcatct
      361 gaaatcatag gattactaat gctggaggtt cacaattttc caggagcatt attggttgaa
      421 ttagccagtg agtttgttga tgctgtcaaa cagggcaacc taacgaatgg aaaatctttg
      481 gagctattac ccatcatttt cactgccctt gctaccaaaa aggagaatct agcttatgga
      541 aaaggtgaac taagtgggga agaatgtaag aagcagttga ttaacaccct ctgttctggc
      601 agatgggatc atcaatatgt aatccaactc acctccatgt tcaaggatgt ccctctgact
      661 gcagaagagg tggaaactgt ggtggaaaaa gtgttgacga tgttctccaa attgaatctt
      721 caagaaatac cacccttggt ctatcagctt ctggttctct cctcaaaggg aagccggaag
      781 aaggttttgg aaggaatcat cactttcttc aacaagctag atacgcagca cagtgaggaa
      841 cagaatagtg atgagctgtt ggattttgtt actgtaccat caggtgaact tcgtcacgtg
      901 gaaggcacca ttattctaca cattgtgttt gccatcaagt tggactgtga actaggcaga
      961 gaactactga aactcctgaa ggcaggacag caaggagatt tcagtagtaa tatatgtcct
     1021 ttcagcattg ccctcttcct ctctgtaaca agaatacaga gatttgagga acaggtattt
     1081 gaccttttaa agtctttggt tataaaaagc tttaaggatc ttcagcttct ccaaggctca
     1141 aaatttcttc agaatctagt tcctcataga tgttgtgttt caaccatgat cttggaagtg
     1201 gtaaagaata gtgttcacag ttgggatcat gttactcagg gtctggtaga acttggcttc
     1261 attttaatgg attcctatgg gccaaagaag attcttgatg gaaaaactat tgaagccagc
     1321 tcaggtcttt ctagaatgcc aaaccagcat gcatgtaagc tgggagctaa tatcctgttg
     1381 gaaactttca agatccatga gatgatcaga caagaaattc tggagcaggt cctcaacagg
     1441 gttgttacca gaggatcctc ctccatcact catttcatag acctgctttc agatatcatc
     1501 atgtattcac ccttagttct tcaaagttgt tcttctaaag tcacagaaac ttttgactat
     1561 ttgtcctttc tgccccttca aaccgtacaa gggctgatga aggcagtgct gccccttcta
     1621 aaagtcagct tgtcaataag agactccttg atacttgtcc ttcggaaagc tatgtttgcc
     1681 agccagcttg atgcccgaaa atctgcagtt gctgggtttt tgctgctcct gaagaacttt
     1741 aaagttttag gcagcttgtc gtcttctcag tgcagtcagt ctattggtat tagccaggtc
     1801 catgtggatg tccatagccg ttacaattct gtcgccaatg aaaccttttg ccttgagatc
     1861 atggatagtt tgaggagatg cttaggccag caggctgatg ttcgactcat gctttatgag
     1921 gggttctatg atgtccttcg aagaaattct cagctggcta attcagtcat gcaaactctg
     1981 ctctcacagt taaaacaatt ctatgagccg gaacctgata tgctgccacc tctgaaatta
     2041 gaagcttgta ttctgaccca aggagatcag atctctctac aggaaccact ggattgtctg
     2101 ctttgttgta ttcaacactg tttggcctgg tataagagta gagtgatgcc cctacagcag
     2161 aaagaagagg aggaagaaga agagggattc taccaagact tagatgatat gttggagtct
     2221 attactagta gaatgattaa gagtgaacta gaggactttg aactggacaa atcagcagat
     2281 ttttctcaga gcactggtat tggcatcaaa aacaatatct gtgcttttct tgttatggga
     2341 gtttgtgagg ttctaataga atataatttc tccgtaagta atttcagtaa gaataagttt
     2401 gaggaggttc tgagcttatt tatgtgttac aaggaactct ctgacatcct taatgaaaaa
     2461 gctggtaaag gcaaaactaa aatggccagc aaaacaaatg atagtttttt gtccatgaaa
     2521 tttgtgtctg atcttctcac cgctcttttc agggacagta cccaaagtca tgaagagagc
     2581 ctgtctgttc taaggtccag caatgagttt atgcgctatg cagtgagtgt ggctctgcag
     2641 aaggtacagc agctaaagga aatggggcat gtgagtggcc ctgatggcag aaacccagag
     2701 aaggtctttc agaacctctg tgacataact cgggtcttgc tttggagata cacttcaatt
     2761 cctacttcag tggaagagtc gggaaagaaa gagaaaggaa agagcatctc gctgctgtgc
     2821 ttggagggtt tgcagaaaat attcagtgtc gtgcaacagt tctaccagcc caagattcat
     2881 cagtttctca gggctctgga tgccacagat aaggaggaag aggtggaagt cagtgtcact
     2941 caaagagcag cattccagat ccggcagttt cagaggtcct tgttgaatat acttagcagc
     3001 caagaagaag actttaacag caaagaagcc ctcctactcg ttactgttct ctccaacttg
     3061 tccaagctgc tggagccctc ctccactcag tttgtgcaga tgttatcctg gacaactaag
     3121 atttgcaagg aaaacagctg ggaggatgcc tcattttgca agggcttgat gaatttgctc
     3181 ttcagcctcc atgttttgtg taagagtcct gtgaccctgc tgcgtgactt gtcccaggat
     3241 atccatggac atcttggaga catagaccag gatgtagaag tggagaaaac aaaccacttt
     3301 gcagtggtga atttgagaac agctgcccct actgtctgtt tacttcttct gagtcaggct
     3361 gagaaggtcc tagaagaagt ggactggtta atcaccaagc ttaagggaca agtgagccaa
     3421 gaaattatac cagaagaagc ctcttctcag gcaaccctac caaatcatcc cattgagaaa
     3481 gccatcatca tacaattggg aactctgctt acatttttcc acgagctggt gcagacggcc
     3541 ctgccatcag gcagctgtgt ggacacctta ttaaaggacc tttgcaaaat gtacaccatt
     3601 cttacagcgc ttgtcagata ttatctccag gtgtgtcagc actccagagg aattccgaaa
     3661 aatatggaga agctggtgaa gctgtcaggt tcgcacctga ccccgctatg ctattctttc
     3721 atttcttaca tacagaacaa gaagagtaag agcctaaaac atgcaggaga aaagaaaaag
     3781 gagaaaaccg ctgctgggcc cacagctgtg gccagagctc ttcgggaaac caagccaatc
     3841 cctaatctca tctttgccat tgaacagtat gaaaaatttc tcatccacct ttctaagagg
     3901 tccaaggtga acctgatgca gcatataaag ctcagcacct cacgagactt caagatcaaa
     3961 gggaacatcc tggacatggt tcttcaagag gatgaggatg aagatgaaga gggcactgca
     4021 tcagagcacg agggacagaa caaagaacca gccaagaaga aaaggaaaaa ataaatgaaa
     4081 cgcctgagtt aatgtgaa
//
LOCUS       XM_032620184            4001 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FA complementation group I (FANCI),
            transcript variant X3, mRNA.
ACCESSION   XM_032620184
VERSION     XM_032620184.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4001
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4001
                     /gene="FANCI"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747684"
     CDS             96..3977
                     /gene="FANCI"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X3"
                     /protein_id="XP_032476075.1"
                     /db_xref="GeneID:116747684"
                     /translation="MDQKILSLAAEKTADRLQKFLQTLKEDDLANLLQNQAVKGKAAG
                     ALLRAIFKGFPCSEEAGALRRLKIYSCCVQLLESGDLQKEVASEIIGLLMLEVHNFPG
                     ALLVELASEFVDAVKQGNLTNGKSLELLPIIFTALATKKENLAYGKGELSGEECKKQL
                     INTLCSGRWDHQYVIQLTSMFKDVPLTAEEVETVVEKVLTMFSKLNLQEIPPLVYQLL
                     VLSSKGSRKKVLEGIITFFNKLDTQHSEEQNSDELLDFVTVPSGELRHVEGTIILHIV
                     FAIKLDCELGRELLKLLKVFDLLKSLVIKSFKDLQLLQGSKFLQNLVPHRCCVSTMIL
                     EVVKNSVHSWDHVTQGLVELGFILMDSYGPKKILDGKTIEASSGLSRMPNQHACKLGA
                     NILLETFKIHEMIRQEILEQVLNRVVTRGSSSITHFIDLLSDIIMYSPLVLQSCSSKV
                     TETFDYLSFLPLQTVQGLMKAVLPLLKVSLSIRDSLILVLRKAMFASQLDARKSAVAG
                     FLLLLKNFKVLGSLSSSQCSQSIGISQVHVDVHSRYNSVANETFCLEIMDSLRRCLGQ
                     QADVRLMLYEGFYDVLRRNSQLANSVMQTLLSQLKQFYEPEPDMLPPLKLEACILTQG
                     DQISLQEPLDCLLCCIQHCLAWYKSRVMPLQQKEEEEEEEGFYQDLDDMLESITSRMI
                     KSELEDFELDKSADFSQSTGIGIKNNICAFLVMGVCEVLIEYNFSVSNFSKNKFEEVL
                     SLFMCYKELSDILNEKAGKGKTKMASKTNDSFLSMKFVSDLLTALFRDSTQSHEESLS
                     VLRSSNEFMRYAVSVALQKVQQLKEMGHVSGPDGRNPEKVFQNLCDITRVLLWRYTSI
                     PTSVEESGKKEKGKSISLLCLEGLQKIFSVVQQFYQPKIHQFLRALDATDKEEEVEVS
                     VTQRAAFQIRQFQRSLLNILSSQEEDFNSKEALLLVTVLSNLSKLLEPSSTQFVQMLS
                     WTTKICKENSWEDASFCKGLMNLLFSLHVLCKSPVTLLRDLSQDIHGHLGDIDQDVEV
                     EKTNHFAVVNLRTAAPTVCLLLLSQAEKVLEEVDWLITKLKGQVSQEIIPEEASSQAT
                     LPNHPIEKAIIIQLGTLLTFFHELVQTALPSGSCVDTLLKDLCKMYTILTALVRYYLQ
                     VCQHSRGIPKNMEKLVKLSGSHLTPLCYSFISYIQNKKSKSLKHAGEKKKEKTAAGPT
                     AVARALRETKPIPNLIFAIEQYEKFLIHLSKRSKVNLMQHIKLSTSRDFKIKGNILDM
                     VLQEDEDEDEEGTASEHEGQNKEPAKKKRKK"
     misc_feature    96..254
                     /gene="FANCI"
                     /note="FANCI solenoid 1 cap; Region: FANCI_S1-cap;
                     pfam14674"
                     /db_xref="CDD:434117"
     misc_feature    222..3863
                     /gene="FANCI"
                     /note="Fanconi anemia I protein; Region: FANCI; cd11720"
                     /db_xref="CDD:212594"
     misc_feature    order(237..239,249..251,342..347,354..356,363..368,
                     375..380,387..389,477..479,486..488,639..644,738..740,
                     750..752,912..914,924..926,933..935,1128..1130,1326..1328,
                     1338..1340,1347..1349,1440..1442,1449..1451,1458..1463,
                     1470..1472,1566..1571,1578..1580,1743..1748,1755..1760,
                     1767..1772,1776..1781,1848..1850,1854..1868,1875..1877,
                     1884..1886,2034..2036,2046..2048)
                     /gene="FANCI"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212594"
     misc_feature    order(954..956,966..968,975..977,993..995,1008..1010,
                     1017..1019,2925..2927,3063..3065,3219..3221,3267..3269,
                     3306..3308,3477..3479,3489..3491,3519..3521,3777..3779,
                     3798..3803)
                     /gene="FANCI"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212594"
ORIGIN      
        1 gcgggagctg ctgctcccgg taacggaagt tcggcggcgt tgggttgagc ggactttttg
       61 gaagcttttg gaggagtttc ttgatatgtg caacaatgga ccagaaaatt ttatctctag
      121 cagcagaaaa aacagcagac agactgcaaa aatttcttca aaccctgaaa gaagatgatc
      181 tggctaatct ccttcagaat caggcagtga aaggaaaagc tgctggagca ctcctgagag
      241 ccatcttcaa aggtttcccc tgttctgaag aagctggagc tcttaggaga cttaagatat
      301 acagttgttg tgtccaattg ttggaatcag gggatttgca gaaagaagta gcatctgaaa
      361 tcataggatt actaatgctg gaggttcaca attttccagg agcattattg gttgaattag
      421 ccagtgagtt tgttgatgct gtcaaacagg gcaacctaac gaatggaaaa tctttggagc
      481 tattacccat cattttcact gcccttgcta ccaaaaagga gaatctagct tatggaaaag
      541 gtgaactaag tggggaagaa tgtaagaagc agttgattaa caccctctgt tctggcagat
      601 gggatcatca atatgtaatc caactcacct ccatgttcaa ggatgtccct ctgactgcag
      661 aagaggtgga aactgtggtg gaaaaagtgt tgacgatgtt ctccaaattg aatcttcaag
      721 aaataccacc cttggtctat cagcttctgg ttctctcctc aaagggaagc cggaagaagg
      781 ttttggaagg aatcatcact ttcttcaaca agctagatac gcagcacagt gaggaacaga
      841 atagtgatga gctgttggat tttgttactg taccatcagg tgaacttcgt cacgtggaag
      901 gcaccattat tctacacatt gtgtttgcca tcaagttgga ctgtgaacta ggcagagaac
      961 tactgaaact cctgaaggta tttgaccttt taaagtcttt ggttataaaa agctttaagg
     1021 atcttcagct tctccaaggc tcaaaatttc ttcagaatct agttcctcat agatgttgtg
     1081 tttcaaccat gatcttggaa gtggtaaaga atagtgttca cagttgggat catgttactc
     1141 agggtctggt agaacttggc ttcattttaa tggattccta tgggccaaag aagattcttg
     1201 atggaaaaac tattgaagcc agctcaggtc tttctagaat gccaaaccag catgcatgta
     1261 agctgggagc taatatcctg ttggaaactt tcaagatcca tgagatgatc agacaagaaa
     1321 ttctggagca ggtcctcaac agggttgtta ccagaggatc ctcctccatc actcatttca
     1381 tagacctgct ttcagatatc atcatgtatt cacccttagt tcttcaaagt tgttcttcta
     1441 aagtcacaga aacttttgac tatttgtcct ttctgcccct tcaaaccgta caagggctga
     1501 tgaaggcagt gctgcccctt ctaaaagtca gcttgtcaat aagagactcc ttgatacttg
     1561 tccttcggaa agctatgttt gccagccagc ttgatgcccg aaaatctgca gttgctgggt
     1621 ttttgctgct cctgaagaac tttaaagttt taggcagctt gtcgtcttct cagtgcagtc
     1681 agtctattgg tattagccag gtccatgtgg atgtccatag ccgttacaat tctgtcgcca
     1741 atgaaacctt ttgccttgag atcatggata gtttgaggag atgcttaggc cagcaggctg
     1801 atgttcgact catgctttat gaggggttct atgatgtcct tcgaagaaat tctcagctgg
     1861 ctaattcagt catgcaaact ctgctctcac agttaaaaca attctatgag ccggaacctg
     1921 atatgctgcc acctctgaaa ttagaagctt gtattctgac ccaaggagat cagatctctc
     1981 tacaggaacc actggattgt ctgctttgtt gtattcaaca ctgtttggcc tggtataaga
     2041 gtagagtgat gcccctacag cagaaagaag aggaggaaga agaagaggga ttctaccaag
     2101 acttagatga tatgttggag tctattacta gtagaatgat taagagtgaa ctagaggact
     2161 ttgaactgga caaatcagca gatttttctc agagcactgg tattggcatc aaaaacaata
     2221 tctgtgcttt tcttgttatg ggagtttgtg aggttctaat agaatataat ttctccgtaa
     2281 gtaatttcag taagaataag tttgaggagg ttctgagctt atttatgtgt tacaaggaac
     2341 tctctgacat ccttaatgaa aaagctggta aaggcaaaac taaaatggcc agcaaaacaa
     2401 atgatagttt tttgtccatg aaatttgtgt ctgatcttct caccgctctt ttcagggaca
     2461 gtacccaaag tcatgaagag agcctgtctg ttctaaggtc cagcaatgag tttatgcgct
     2521 atgcagtgag tgtggctctg cagaaggtac agcagctaaa ggaaatgggg catgtgagtg
     2581 gccctgatgg cagaaaccca gagaaggtct ttcagaacct ctgtgacata actcgggtct
     2641 tgctttggag atacacttca attcctactt cagtggaaga gtcgggaaag aaagagaaag
     2701 gaaagagcat ctcgctgctg tgcttggagg gtttgcagaa aatattcagt gtcgtgcaac
     2761 agttctacca gcccaagatt catcagtttc tcagggctct ggatgccaca gataaggagg
     2821 aagaggtgga agtcagtgtc actcaaagag cagcattcca gatccggcag tttcagaggt
     2881 ccttgttgaa tatacttagc agccaagaag aagactttaa cagcaaagaa gccctcctac
     2941 tcgttactgt tctctccaac ttgtccaagc tgctggagcc ctcctccact cagtttgtgc
     3001 agatgttatc ctggacaact aagatttgca aggaaaacag ctgggaggat gcctcatttt
     3061 gcaagggctt gatgaatttg ctcttcagcc tccatgtttt gtgtaagagt cctgtgaccc
     3121 tgctgcgtga cttgtcccag gatatccatg gacatcttgg agacatagac caggatgtag
     3181 aagtggagaa aacaaaccac tttgcagtgg tgaatttgag aacagctgcc cctactgtct
     3241 gtttacttct tctgagtcag gctgagaagg tcctagaaga agtggactgg ttaatcacca
     3301 agcttaaggg acaagtgagc caagaaatta taccagaaga agcctcttct caggcaaccc
     3361 taccaaatca tcccattgag aaagccatca tcatacaatt gggaactctg cttacatttt
     3421 tccacgagct ggtgcagacg gccctgccat caggcagctg tgtggacacc ttattaaagg
     3481 acctttgcaa aatgtacacc attcttacag cgcttgtcag atattatctc caggtgtgtc
     3541 agcactccag aggaattccg aaaaatatgg agaagctggt gaagctgtca ggttcgcacc
     3601 tgaccccgct atgctattct ttcatttctt acatacagaa caagaagagt aagagcctaa
     3661 aacatgcagg agaaaagaaa aaggagaaaa ccgctgctgg gcccacagct gtggccagag
     3721 ctcttcggga aaccaagcca atccctaatc tcatctttgc cattgaacag tatgaaaaat
     3781 ttctcatcca cctttctaag aggtccaagg tgaacctgat gcagcatata aagctcagca
     3841 cctcacgaga cttcaagatc aaagggaaca tcctggacat ggttcttcaa gaggatgagg
     3901 atgaagatga agagggcact gcatcagagc acgagggaca gaacaaagaa ccagccaaga
     3961 agaaaaggaa aaaataaatg aaacgcctga gttaatgtga a
//
LOCUS       XM_032620193            5837 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FA complementation group I (FANCI),
            transcript variant X4, mRNA.
ACCESSION   XM_032620193
VERSION     XM_032620193.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5837
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5837
                     /gene="FANCI"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 2 Proteins, and
                     79% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747684"
     CDS             2118..5813
                     /gene="FANCI"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X4"
                     /protein_id="XP_032476084.1"
                     /db_xref="GeneID:116747684"
                     /translation="MLEVHNFPGALLVELASEFVDAVKQGNLTNGKSLELLPIIFTAL
                     ATKKENLAYGKGELSGEECKKQLINTLCSGRWDHQYVIQLTSMFKDVPLTAEEVETVV
                     EKVLTMFSKLNLQEIPPLVYQLLVLSSKGSRKKVLEGIITFFNKLDTQHSEEQNSDEL
                     LDFVTVPSGELRHVEGTIILHIVFAIKLDCELGRELLKLLKAGQQGDFSSNICPFSIA
                     LFLSVTRIQRFEEQVFDLLKSLVIKSFKDLQLLQGSKFLQNLVPHRCCVSTMILEVVK
                     NSVHSWDHVTQGLVELGFILMDSYGPKKILDGKTIEASSGLSRMPNQHACKLGANILL
                     ETFKIHEMIRQEILEQVLNRVVTRGSSSITHFIDLLSDIIMYSPLVLQSCSSKVTETF
                     DYLSFLPLQTVQGLMKAVLPLLKVSLSIRDSLILVLRKAMFASQLDARKSAVAGFLLL
                     LKNFKVLGSLSSSQCSQSIGISQVHVDVHSRYNSVANETFCLEIMDSLRRCLGQQADV
                     RLMLYEGFYDVLRRNSQLANSVMQTLLSQLKQFYEPEPDMLPPLKLEACILTQGDQIS
                     LQEPLDCLLCCIQHCLAWYKSRVMPLQQKEEEEEEEGFYQDLDDMLESITSRMIKSEL
                     EDFELDKSADFSQSTGIGIKNNICAFLVMGVCEVLIEYNFSVSNFSKNKFEEVLSLFM
                     CYKELSDILNEKAGKGKTKMASKTNDSFLSMKFVSDLLTALFRDSTQSHEESLSVLRS
                     SNEFMRYAVSVALQKVQQLKEMGHVSGPDGRNPEKVFQNLCDITRVLLWRYTSIPTSV
                     EESGKKEKGKSISLLCLEGLQKIFSVVQQFYQPKIHQFLRALDATDKEEEVEVSVTQR
                     AAFQIRQFQRSLLNILSSQEEDFNSKEALLLVTVLSNLSKLLEPSSTQFVQMLSWTTK
                     ICKENSWEDASFCKGLMNLLFSLHVLCKSPVTLLRDLSQDIHGHLGDIDQDVEVEKTN
                     HFAVVNLRTAAPTVCLLLLSQAEKVLEEVDWLITKLKGQVSQEIIPEEASSQATLPNH
                     PIEKAIIIQLGTLLTFFHELVQTALPSGSCVDTLLKDLCKMYTILTALVRYYLQVCQH
                     SRGIPKNMEKLVKLSGSHLTPLCYSFISYIQNKKSKSLKHAGEKKKEKTAAGPTAVAR
                     ALRETKPIPNLIFAIEQYEKFLIHLSKRSKVNLMQHIKLSTSRDFKIKGNILDMVLQE
                     DEDEDEEGTASEHEGQNKEPAKKKRKK"
     misc_feature    2118..5699
                     /gene="FANCI"
                     /note="Fanconi anemia I protein; Region: FANCI; cd11720"
                     /db_xref="CDD:212594"
     misc_feature    order(2118..2123,2130..2132,2220..2222,2229..2231,
                     2382..2387,2481..2483,2493..2495,2655..2657,2667..2669,
                     2676..2678,2964..2966,3162..3164,3174..3176,3183..3185,
                     3276..3278,3285..3287,3294..3299,3306..3308,3402..3407,
                     3414..3416,3579..3584,3591..3596,3603..3608,3612..3617,
                     3684..3686,3690..3704,3711..3713,3720..3722,3870..3872,
                     3882..3884)
                     /gene="FANCI"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212594"
     misc_feature    order(2697..2699,2709..2711,2718..2720,2829..2831,
                     2844..2846,2853..2855,4761..4763,4899..4901,5055..5057,
                     5103..5105,5142..5144,5313..5315,5325..5327,5355..5357,
                     5613..5615,5634..5639)
                     /gene="FANCI"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212594"
ORIGIN      
        1 ggtaacggaa gttcggcggc gttgggttga gcggactttt tggaagcttt tggaggagtt
       61 tcttgatatg tgcaacaatg gaccagaaaa ttttatctct agcagcagaa aaaacagcag
      121 acagactgca aaaatttctt caaaccctga aagaagatga tctggctaat ctccttcaga
      181 atcaggcagt gaaaggaaaa gctgctggag cactcctgag agccatcttc aaaggtaata
      241 ataatgccac ttctatctct ctggattcat tggtatattt gtttactttg ggtgcatatt
      301 gctacttttc ttactgtttg atgccccact gagacttttc tgttttgggg attttacaga
      361 atcaactaaa gcagcagtct cctgtcttgt ggacttaaat aattttgcta aagggggttg
      421 aagtggctac ctgagattgt attgctggtt ttggagcctg taaaggatgc acgtcataaa
      481 atccgctttg atttatttgt gcttttaaaa ttgtggagaa gaggacttcc ctggtggtcc
      541 agtggttaag actccgtgct tccactgcag ggggcccggg ttctgtccct ggtcggggaa
      601 gttccgcatg ccctgcggtg tagccaaaag aaaaattgtg gagaagagag cagcaatgtt
      661 taatagttaa tctgtgctta acaaaagagg ctagggtgct ctgagtttta atgaaatgga
      721 gtatcttagg tgacttatgt agagattctt aattcccagt ggggcatatt tttattccat
      781 gtcttgaaca agggccagtt ctacattgtt gctggttgtg actcatagtt gttttataaa
      841 ttgtagtaga ataaaattct acaagcaaaa attaaaagtt gctttacact cttagcaggt
      901 tattttaact tgctttattt ttcttacccc ctcaagtaaa ttgtgtctct ccttgcaagg
      961 gttcaaaaac acatcttcct gtgcatgaaa aaaaaatttt tttttgactc tttattggag
     1021 tataattact ttacaatggt gtgttagttt ctgctttcta acaaagtgaa tcagttatac
     1081 atatgttccc atatctcttc cctcttgcat ctccctccct cccaccctcc ctatcccacc
     1141 cctctaggtg gccacaaaga actgaactga tctccctgtg ctatgcggct gcttcccact
     1201 agctatctgt tttacgtttg gtagtgtata tatgtccatg ccactctctc gctttgtcac
     1261 agcttaccct tccccctccc catatcctca agtccattct ctagtaggtc tgtgtcttta
     1321 ttcctgtctt acccctaggt tcttcatgac tttttttttc ttagattcca tatatatgtg
     1381 ttagcatacg gtatttgtct ttctctttct gacttacttc actctgtatg acagactcta
     1441 ggtccatcca cctcactaca aataactcaa atttcgtttc ttttatggct gagtaatatt
     1501 ccattttata tatgtgccac atctttaccc attcatccga taatggacat ttaggttgct
     1561 tccatctcct ggctattgta aatagagctg caatgaacat tttggtacat gactctttct
     1621 gaattatggt tttctcaggg tatatgccca gtagtgggat tgctaggtca tatggtagtt
     1681 ctatttgtag ttttttaagg aacctccata ctgttctcca tagtggctgt actaattcac
     1741 attcccacca gcagtgcaag agtgttccct tttctccaca ccctctccag catttattgt
     1801 ttgtagatat tgtttgtttg tttttgtttt tgttttgttt tgttgtacat gggcctctca
     1861 ctgttgtggc ctctcctatt gtggagcaac aggcgccgga cgcgcaggct cagcggccat
     1921 ggctcacagg cgcagccgct ccgtgacatg tgggatcctc ccggaccggg gcacgaaccc
     1981 acatcccctg catcggtttc ccctgttctg aagaagctgg agctcttagg agacttaaga
     2041 tatacagttg ttgtgtccaa ttgttggaat caggggattt gcagaaagaa gtagcatctg
     2101 aaatcatagg attactaatg ctggaggttc acaattttcc aggagcatta ttggttgaat
     2161 tagccagtga gtttgttgat gctgtcaaac agggcaacct aacgaatgga aaatctttgg
     2221 agctattacc catcattttc actgcccttg ctaccaaaaa ggagaatcta gcttatggaa
     2281 aaggtgaact aagtggggaa gaatgtaaga agcagttgat taacaccctc tgttctggca
     2341 gatgggatca tcaatatgta atccaactca cctccatgtt caaggatgtc cctctgactg
     2401 cagaagaggt ggaaactgtg gtggaaaaag tgttgacgat gttctccaaa ttgaatcttc
     2461 aagaaatacc acccttggtc tatcagcttc tggttctctc ctcaaaggga agccggaaga
     2521 aggttttgga aggaatcatc actttcttca acaagctaga tacgcagcac agtgaggaac
     2581 agaatagtga tgagctgttg gattttgtta ctgtaccatc aggtgaactt cgtcacgtgg
     2641 aaggcaccat tattctacac attgtgtttg ccatcaagtt ggactgtgaa ctaggcagag
     2701 aactactgaa actcctgaag gcaggacagc aaggagattt cagtagtaat atatgtcctt
     2761 tcagcattgc cctcttcctc tctgtaacaa gaatacagag atttgaggaa caggtatttg
     2821 accttttaaa gtctttggtt ataaaaagct ttaaggatct tcagcttctc caaggctcaa
     2881 aatttcttca gaatctagtt cctcatagat gttgtgtttc aaccatgatc ttggaagtgg
     2941 taaagaatag tgttcacagt tgggatcatg ttactcaggg tctggtagaa cttggcttca
     3001 ttttaatgga ttcctatggg ccaaagaaga ttcttgatgg aaaaactatt gaagccagct
     3061 caggtctttc tagaatgcca aaccagcatg catgtaagct gggagctaat atcctgttgg
     3121 aaactttcaa gatccatgag atgatcagac aagaaattct ggagcaggtc ctcaacaggg
     3181 ttgttaccag aggatcctcc tccatcactc atttcataga cctgctttca gatatcatca
     3241 tgtattcacc cttagttctt caaagttgtt cttctaaagt cacagaaact tttgactatt
     3301 tgtcctttct gccccttcaa accgtacaag ggctgatgaa ggcagtgctg ccccttctaa
     3361 aagtcagctt gtcaataaga gactccttga tacttgtcct tcggaaagct atgtttgcca
     3421 gccagcttga tgcccgaaaa tctgcagttg ctgggttttt gctgctcctg aagaacttta
     3481 aagttttagg cagcttgtcg tcttctcagt gcagtcagtc tattggtatt agccaggtcc
     3541 atgtggatgt ccatagccgt tacaattctg tcgccaatga aaccttttgc cttgagatca
     3601 tggatagttt gaggagatgc ttaggccagc aggctgatgt tcgactcatg ctttatgagg
     3661 ggttctatga tgtccttcga agaaattctc agctggctaa ttcagtcatg caaactctgc
     3721 tctcacagtt aaaacaattc tatgagccgg aacctgatat gctgccacct ctgaaattag
     3781 aagcttgtat tctgacccaa ggagatcaga tctctctaca ggaaccactg gattgtctgc
     3841 tttgttgtat tcaacactgt ttggcctggt ataagagtag agtgatgccc ctacagcaga
     3901 aagaagagga ggaagaagaa gagggattct accaagactt agatgatatg ttggagtcta
     3961 ttactagtag aatgattaag agtgaactag aggactttga actggacaaa tcagcagatt
     4021 tttctcagag cactggtatt ggcatcaaaa acaatatctg tgcttttctt gttatgggag
     4081 tttgtgaggt tctaatagaa tataatttct ccgtaagtaa tttcagtaag aataagtttg
     4141 aggaggttct gagcttattt atgtgttaca aggaactctc tgacatcctt aatgaaaaag
     4201 ctggtaaagg caaaactaaa atggccagca aaacaaatga tagttttttg tccatgaaat
     4261 ttgtgtctga tcttctcacc gctcttttca gggacagtac ccaaagtcat gaagagagcc
     4321 tgtctgttct aaggtccagc aatgagttta tgcgctatgc agtgagtgtg gctctgcaga
     4381 aggtacagca gctaaaggaa atggggcatg tgagtggccc tgatggcaga aacccagaga
     4441 aggtctttca gaacctctgt gacataactc gggtcttgct ttggagatac acttcaattc
     4501 ctacttcagt ggaagagtcg ggaaagaaag agaaaggaaa gagcatctcg ctgctgtgct
     4561 tggagggttt gcagaaaata ttcagtgtcg tgcaacagtt ctaccagccc aagattcatc
     4621 agtttctcag ggctctggat gccacagata aggaggaaga ggtggaagtc agtgtcactc
     4681 aaagagcagc attccagatc cggcagtttc agaggtcctt gttgaatata cttagcagcc
     4741 aagaagaaga ctttaacagc aaagaagccc tcctactcgt tactgttctc tccaacttgt
     4801 ccaagctgct ggagccctcc tccactcagt ttgtgcagat gttatcctgg acaactaaga
     4861 tttgcaagga aaacagctgg gaggatgcct cattttgcaa gggcttgatg aatttgctct
     4921 tcagcctcca tgttttgtgt aagagtcctg tgaccctgct gcgtgacttg tcccaggata
     4981 tccatggaca tcttggagac atagaccagg atgtagaagt ggagaaaaca aaccactttg
     5041 cagtggtgaa tttgagaaca gctgccccta ctgtctgttt acttcttctg agtcaggctg
     5101 agaaggtcct agaagaagtg gactggttaa tcaccaagct taagggacaa gtgagccaag
     5161 aaattatacc agaagaagcc tcttctcagg caaccctacc aaatcatccc attgagaaag
     5221 ccatcatcat acaattggga actctgctta catttttcca cgagctggtg cagacggccc
     5281 tgccatcagg cagctgtgtg gacaccttat taaaggacct ttgcaaaatg tacaccattc
     5341 ttacagcgct tgtcagatat tatctccagg tgtgtcagca ctccagagga attccgaaaa
     5401 atatggagaa gctggtgaag ctgtcaggtt cgcacctgac cccgctatgc tattctttca
     5461 tttcttacat acagaacaag aagagtaaga gcctaaaaca tgcaggagaa aagaaaaagg
     5521 agaaaaccgc tgctgggccc acagctgtgg ccagagctct tcgggaaacc aagccaatcc
     5581 ctaatctcat ctttgccatt gaacagtatg aaaaatttct catccacctt tctaagaggt
     5641 ccaaggtgaa cctgatgcag catataaagc tcagcacctc acgagacttc aagatcaaag
     5701 ggaacatcct ggacatggtt cttcaagagg atgaggatga agatgaagag ggcactgcat
     5761 cagagcacga gggacagaac aaagaaccag ccaagaagaa aaggaaaaaa taaatgaaac
     5821 gcctgagtta atgtgaa
//
LOCUS       XM_032620201            3961 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FA complementation group I (FANCI),
            transcript variant X5, mRNA.
ACCESSION   XM_032620201
VERSION     XM_032620201.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3961
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3961
                     /gene="FANCI"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 long SRA reads, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747684"
     CDS             242..3937
                     /gene="FANCI"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X4"
                     /protein_id="XP_032476092.1"
                     /db_xref="GeneID:116747684"
                     /translation="MLEVHNFPGALLVELASEFVDAVKQGNLTNGKSLELLPIIFTAL
                     ATKKENLAYGKGELSGEECKKQLINTLCSGRWDHQYVIQLTSMFKDVPLTAEEVETVV
                     EKVLTMFSKLNLQEIPPLVYQLLVLSSKGSRKKVLEGIITFFNKLDTQHSEEQNSDEL
                     LDFVTVPSGELRHVEGTIILHIVFAIKLDCELGRELLKLLKAGQQGDFSSNICPFSIA
                     LFLSVTRIQRFEEQVFDLLKSLVIKSFKDLQLLQGSKFLQNLVPHRCCVSTMILEVVK
                     NSVHSWDHVTQGLVELGFILMDSYGPKKILDGKTIEASSGLSRMPNQHACKLGANILL
                     ETFKIHEMIRQEILEQVLNRVVTRGSSSITHFIDLLSDIIMYSPLVLQSCSSKVTETF
                     DYLSFLPLQTVQGLMKAVLPLLKVSLSIRDSLILVLRKAMFASQLDARKSAVAGFLLL
                     LKNFKVLGSLSSSQCSQSIGISQVHVDVHSRYNSVANETFCLEIMDSLRRCLGQQADV
                     RLMLYEGFYDVLRRNSQLANSVMQTLLSQLKQFYEPEPDMLPPLKLEACILTQGDQIS
                     LQEPLDCLLCCIQHCLAWYKSRVMPLQQKEEEEEEEGFYQDLDDMLESITSRMIKSEL
                     EDFELDKSADFSQSTGIGIKNNICAFLVMGVCEVLIEYNFSVSNFSKNKFEEVLSLFM
                     CYKELSDILNEKAGKGKTKMASKTNDSFLSMKFVSDLLTALFRDSTQSHEESLSVLRS
                     SNEFMRYAVSVALQKVQQLKEMGHVSGPDGRNPEKVFQNLCDITRVLLWRYTSIPTSV
                     EESGKKEKGKSISLLCLEGLQKIFSVVQQFYQPKIHQFLRALDATDKEEEVEVSVTQR
                     AAFQIRQFQRSLLNILSSQEEDFNSKEALLLVTVLSNLSKLLEPSSTQFVQMLSWTTK
                     ICKENSWEDASFCKGLMNLLFSLHVLCKSPVTLLRDLSQDIHGHLGDIDQDVEVEKTN
                     HFAVVNLRTAAPTVCLLLLSQAEKVLEEVDWLITKLKGQVSQEIIPEEASSQATLPNH
                     PIEKAIIIQLGTLLTFFHELVQTALPSGSCVDTLLKDLCKMYTILTALVRYYLQVCQH
                     SRGIPKNMEKLVKLSGSHLTPLCYSFISYIQNKKSKSLKHAGEKKKEKTAAGPTAVAR
                     ALRETKPIPNLIFAIEQYEKFLIHLSKRSKVNLMQHIKLSTSRDFKIKGNILDMVLQE
                     DEDEDEEGTASEHEGQNKEPAKKKRKK"
     misc_feature    242..3823
                     /gene="FANCI"
                     /note="Fanconi anemia I protein; Region: FANCI; cd11720"
                     /db_xref="CDD:212594"
     misc_feature    order(242..247,254..256,344..346,353..355,506..511,
                     605..607,617..619,779..781,791..793,800..802,1088..1090,
                     1286..1288,1298..1300,1307..1309,1400..1402,1409..1411,
                     1418..1423,1430..1432,1526..1531,1538..1540,1703..1708,
                     1715..1720,1727..1732,1736..1741,1808..1810,1814..1828,
                     1835..1837,1844..1846,1994..1996,2006..2008)
                     /gene="FANCI"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212594"
     misc_feature    order(821..823,833..835,842..844,953..955,968..970,
                     977..979,2885..2887,3023..3025,3179..3181,3227..3229,
                     3266..3268,3437..3439,3449..3451,3479..3481,3737..3739,
                     3758..3763)
                     /gene="FANCI"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212594"
ORIGIN      
        1 tcggcggcgt tgggttgagc ggactttttg gaagcttttg gaggagctgg ctaatctcct
       61 tcagaatcag gcagtgaaag gaaaagctgc tggagcactc ctgagagcca tcttcaaagg
      121 tttcccctgt tctgaagaag ctggagctct taggagactt aagatataca gttgttgtgt
      181 ccaattgttg gaatcagggg atttgcagaa agaagtagca tctgaaatca taggattact
      241 aatgctggag gttcacaatt ttccaggagc attattggtt gaattagcca gtgagtttgt
      301 tgatgctgtc aaacagggca acctaacgaa tggaaaatct ttggagctat tacccatcat
      361 tttcactgcc cttgctacca aaaaggagaa tctagcttat ggaaaaggtg aactaagtgg
      421 ggaagaatgt aagaagcagt tgattaacac cctctgttct ggcagatggg atcatcaata
      481 tgtaatccaa ctcacctcca tgttcaagga tgtccctctg actgcagaag aggtggaaac
      541 tgtggtggaa aaagtgttga cgatgttctc caaattgaat cttcaagaaa taccaccctt
      601 ggtctatcag cttctggttc tctcctcaaa gggaagccgg aagaaggttt tggaaggaat
      661 catcactttc ttcaacaagc tagatacgca gcacagtgag gaacagaata gtgatgagct
      721 gttggatttt gttactgtac catcaggtga acttcgtcac gtggaaggca ccattattct
      781 acacattgtg tttgccatca agttggactg tgaactaggc agagaactac tgaaactcct
      841 gaaggcagga cagcaaggag atttcagtag taatatatgt cctttcagca ttgccctctt
      901 cctctctgta acaagaatac agagatttga ggaacaggta tttgaccttt taaagtcttt
      961 ggttataaaa agctttaagg atcttcagct tctccaaggc tcaaaatttc ttcagaatct
     1021 agttcctcat agatgttgtg tttcaaccat gatcttggaa gtggtaaaga atagtgttca
     1081 cagttgggat catgttactc agggtctggt agaacttggc ttcattttaa tggattccta
     1141 tgggccaaag aagattcttg atggaaaaac tattgaagcc agctcaggtc tttctagaat
     1201 gccaaaccag catgcatgta agctgggagc taatatcctg ttggaaactt tcaagatcca
     1261 tgagatgatc agacaagaaa ttctggagca ggtcctcaac agggttgtta ccagaggatc
     1321 ctcctccatc actcatttca tagacctgct ttcagatatc atcatgtatt cacccttagt
     1381 tcttcaaagt tgttcttcta aagtcacaga aacttttgac tatttgtcct ttctgcccct
     1441 tcaaaccgta caagggctga tgaaggcagt gctgcccctt ctaaaagtca gcttgtcaat
     1501 aagagactcc ttgatacttg tccttcggaa agctatgttt gccagccagc ttgatgcccg
     1561 aaaatctgca gttgctgggt ttttgctgct cctgaagaac tttaaagttt taggcagctt
     1621 gtcgtcttct cagtgcagtc agtctattgg tattagccag gtccatgtgg atgtccatag
     1681 ccgttacaat tctgtcgcca atgaaacctt ttgccttgag atcatggata gtttgaggag
     1741 atgcttaggc cagcaggctg atgttcgact catgctttat gaggggttct atgatgtcct
     1801 tcgaagaaat tctcagctgg ctaattcagt catgcaaact ctgctctcac agttaaaaca
     1861 attctatgag ccggaacctg atatgctgcc acctctgaaa ttagaagctt gtattctgac
     1921 ccaaggagat cagatctctc tacaggaacc actggattgt ctgctttgtt gtattcaaca
     1981 ctgtttggcc tggtataaga gtagagtgat gcccctacag cagaaagaag aggaggaaga
     2041 agaagaggga ttctaccaag acttagatga tatgttggag tctattacta gtagaatgat
     2101 taagagtgaa ctagaggact ttgaactgga caaatcagca gatttttctc agagcactgg
     2161 tattggcatc aaaaacaata tctgtgcttt tcttgttatg ggagtttgtg aggttctaat
     2221 agaatataat ttctccgtaa gtaatttcag taagaataag tttgaggagg ttctgagctt
     2281 atttatgtgt tacaaggaac tctctgacat ccttaatgaa aaagctggta aaggcaaaac
     2341 taaaatggcc agcaaaacaa atgatagttt tttgtccatg aaatttgtgt ctgatcttct
     2401 caccgctctt ttcagggaca gtacccaaag tcatgaagag agcctgtctg ttctaaggtc
     2461 cagcaatgag tttatgcgct atgcagtgag tgtggctctg cagaaggtac agcagctaaa
     2521 ggaaatgggg catgtgagtg gccctgatgg cagaaaccca gagaaggtct ttcagaacct
     2581 ctgtgacata actcgggtct tgctttggag atacacttca attcctactt cagtggaaga
     2641 gtcgggaaag aaagagaaag gaaagagcat ctcgctgctg tgcttggagg gtttgcagaa
     2701 aatattcagt gtcgtgcaac agttctacca gcccaagatt catcagtttc tcagggctct
     2761 ggatgccaca gataaggagg aagaggtgga agtcagtgtc actcaaagag cagcattcca
     2821 gatccggcag tttcagaggt ccttgttgaa tatacttagc agccaagaag aagactttaa
     2881 cagcaaagaa gccctcctac tcgttactgt tctctccaac ttgtccaagc tgctggagcc
     2941 ctcctccact cagtttgtgc agatgttatc ctggacaact aagatttgca aggaaaacag
     3001 ctgggaggat gcctcatttt gcaagggctt gatgaatttg ctcttcagcc tccatgtttt
     3061 gtgtaagagt cctgtgaccc tgctgcgtga cttgtcccag gatatccatg gacatcttgg
     3121 agacatagac caggatgtag aagtggagaa aacaaaccac tttgcagtgg tgaatttgag
     3181 aacagctgcc cctactgtct gtttacttct tctgagtcag gctgagaagg tcctagaaga
     3241 agtggactgg ttaatcacca agcttaaggg acaagtgagc caagaaatta taccagaaga
     3301 agcctcttct caggcaaccc taccaaatca tcccattgag aaagccatca tcatacaatt
     3361 gggaactctg cttacatttt tccacgagct ggtgcagacg gccctgccat caggcagctg
     3421 tgtggacacc ttattaaagg acctttgcaa aatgtacacc attcttacag cgcttgtcag
     3481 atattatctc caggtgtgtc agcactccag aggaattccg aaaaatatgg agaagctggt
     3541 gaagctgtca ggttcgcacc tgaccccgct atgctattct ttcatttctt acatacagaa
     3601 caagaagagt aagagcctaa aacatgcagg agaaaagaaa aaggagaaaa ccgctgctgg
     3661 gcccacagct gtggccagag ctcttcggga aaccaagcca atccctaatc tcatctttgc
     3721 cattgaacag tatgaaaaat ttctcatcca cctttctaag aggtccaagg tgaacctgat
     3781 gcagcatata aagctcagca cctcacgaga cttcaagatc aaagggaaca tcctggacat
     3841 ggttcttcaa gaggatgagg atgaagatga agagggcact gcatcagagc acgagggaca
     3901 gaacaaagaa ccagccaaga agaaaaggaa aaaataaatg aaacgcctga gttaatgtga
     3961 a
//
LOCUS       XM_032620210            3944 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FA complementation group I (FANCI),
            transcript variant X6, mRNA.
ACCESSION   XM_032620210
VERSION     XM_032620210.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3944
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3944
                     /gene="FANCI"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747684"
     CDS             225..3920
                     /gene="FANCI"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X4"
                     /protein_id="XP_032476101.1"
                     /db_xref="GeneID:116747684"
                     /translation="MLEVHNFPGALLVELASEFVDAVKQGNLTNGKSLELLPIIFTAL
                     ATKKENLAYGKGELSGEECKKQLINTLCSGRWDHQYVIQLTSMFKDVPLTAEEVETVV
                     EKVLTMFSKLNLQEIPPLVYQLLVLSSKGSRKKVLEGIITFFNKLDTQHSEEQNSDEL
                     LDFVTVPSGELRHVEGTIILHIVFAIKLDCELGRELLKLLKAGQQGDFSSNICPFSIA
                     LFLSVTRIQRFEEQVFDLLKSLVIKSFKDLQLLQGSKFLQNLVPHRCCVSTMILEVVK
                     NSVHSWDHVTQGLVELGFILMDSYGPKKILDGKTIEASSGLSRMPNQHACKLGANILL
                     ETFKIHEMIRQEILEQVLNRVVTRGSSSITHFIDLLSDIIMYSPLVLQSCSSKVTETF
                     DYLSFLPLQTVQGLMKAVLPLLKVSLSIRDSLILVLRKAMFASQLDARKSAVAGFLLL
                     LKNFKVLGSLSSSQCSQSIGISQVHVDVHSRYNSVANETFCLEIMDSLRRCLGQQADV
                     RLMLYEGFYDVLRRNSQLANSVMQTLLSQLKQFYEPEPDMLPPLKLEACILTQGDQIS
                     LQEPLDCLLCCIQHCLAWYKSRVMPLQQKEEEEEEEGFYQDLDDMLESITSRMIKSEL
                     EDFELDKSADFSQSTGIGIKNNICAFLVMGVCEVLIEYNFSVSNFSKNKFEEVLSLFM
                     CYKELSDILNEKAGKGKTKMASKTNDSFLSMKFVSDLLTALFRDSTQSHEESLSVLRS
                     SNEFMRYAVSVALQKVQQLKEMGHVSGPDGRNPEKVFQNLCDITRVLLWRYTSIPTSV
                     EESGKKEKGKSISLLCLEGLQKIFSVVQQFYQPKIHQFLRALDATDKEEEVEVSVTQR
                     AAFQIRQFQRSLLNILSSQEEDFNSKEALLLVTVLSNLSKLLEPSSTQFVQMLSWTTK
                     ICKENSWEDASFCKGLMNLLFSLHVLCKSPVTLLRDLSQDIHGHLGDIDQDVEVEKTN
                     HFAVVNLRTAAPTVCLLLLSQAEKVLEEVDWLITKLKGQVSQEIIPEEASSQATLPNH
                     PIEKAIIIQLGTLLTFFHELVQTALPSGSCVDTLLKDLCKMYTILTALVRYYLQVCQH
                     SRGIPKNMEKLVKLSGSHLTPLCYSFISYIQNKKSKSLKHAGEKKKEKTAAGPTAVAR
                     ALRETKPIPNLIFAIEQYEKFLIHLSKRSKVNLMQHIKLSTSRDFKIKGNILDMVLQE
                     DEDEDEEGTASEHEGQNKEPAKKKRKK"
     misc_feature    225..3806
                     /gene="FANCI"
                     /note="Fanconi anemia I protein; Region: FANCI; cd11720"
                     /db_xref="CDD:212594"
     misc_feature    order(225..230,237..239,327..329,336..338,489..494,
                     588..590,600..602,762..764,774..776,783..785,1071..1073,
                     1269..1271,1281..1283,1290..1292,1383..1385,1392..1394,
                     1401..1406,1413..1415,1509..1514,1521..1523,1686..1691,
                     1698..1703,1710..1715,1719..1724,1791..1793,1797..1811,
                     1818..1820,1827..1829,1977..1979,1989..1991)
                     /gene="FANCI"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212594"
     misc_feature    order(804..806,816..818,825..827,936..938,951..953,
                     960..962,2868..2870,3006..3008,3162..3164,3210..3212,
                     3249..3251,3420..3422,3432..3434,3462..3464,3720..3722,
                     3741..3746)
                     /gene="FANCI"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212594"
ORIGIN      
        1 ttcttgatat gtgcaacaat ggaccagaaa attttatctc tagcagcaga aaaaacagca
       61 gacagactgc aaaaatttct tcaaaccctg aaagaagatg atgtttcccc tgttctgaag
      121 aagctggagc tcttaggaga cttaagatat acagttgttg tgtccaattg ttggaatcag
      181 gggatttgca gaaagaagta gcatctgaaa tcataggatt actaatgctg gaggttcaca
      241 attttccagg agcattattg gttgaattag ccagtgagtt tgttgatgct gtcaaacagg
      301 gcaacctaac gaatggaaaa tctttggagc tattacccat cattttcact gcccttgcta
      361 ccaaaaagga gaatctagct tatggaaaag gtgaactaag tggggaagaa tgtaagaagc
      421 agttgattaa caccctctgt tctggcagat gggatcatca atatgtaatc caactcacct
      481 ccatgttcaa ggatgtccct ctgactgcag aagaggtgga aactgtggtg gaaaaagtgt
      541 tgacgatgtt ctccaaattg aatcttcaag aaataccacc cttggtctat cagcttctgg
      601 ttctctcctc aaagggaagc cggaagaagg ttttggaagg aatcatcact ttcttcaaca
      661 agctagatac gcagcacagt gaggaacaga atagtgatga gctgttggat tttgttactg
      721 taccatcagg tgaacttcgt cacgtggaag gcaccattat tctacacatt gtgtttgcca
      781 tcaagttgga ctgtgaacta ggcagagaac tactgaaact cctgaaggca ggacagcaag
      841 gagatttcag tagtaatata tgtcctttca gcattgccct cttcctctct gtaacaagaa
      901 tacagagatt tgaggaacag gtatttgacc ttttaaagtc tttggttata aaaagcttta
      961 aggatcttca gcttctccaa ggctcaaaat ttcttcagaa tctagttcct catagatgtt
     1021 gtgtttcaac catgatcttg gaagtggtaa agaatagtgt tcacagttgg gatcatgtta
     1081 ctcagggtct ggtagaactt ggcttcattt taatggattc ctatgggcca aagaagattc
     1141 ttgatggaaa aactattgaa gccagctcag gtctttctag aatgccaaac cagcatgcat
     1201 gtaagctggg agctaatatc ctgttggaaa ctttcaagat ccatgagatg atcagacaag
     1261 aaattctgga gcaggtcctc aacagggttg ttaccagagg atcctcctcc atcactcatt
     1321 tcatagacct gctttcagat atcatcatgt attcaccctt agttcttcaa agttgttctt
     1381 ctaaagtcac agaaactttt gactatttgt cctttctgcc ccttcaaacc gtacaagggc
     1441 tgatgaaggc agtgctgccc cttctaaaag tcagcttgtc aataagagac tccttgatac
     1501 ttgtccttcg gaaagctatg tttgccagcc agcttgatgc ccgaaaatct gcagttgctg
     1561 ggtttttgct gctcctgaag aactttaaag ttttaggcag cttgtcgtct tctcagtgca
     1621 gtcagtctat tggtattagc caggtccatg tggatgtcca tagccgttac aattctgtcg
     1681 ccaatgaaac cttttgcctt gagatcatgg atagtttgag gagatgctta ggccagcagg
     1741 ctgatgttcg actcatgctt tatgaggggt tctatgatgt ccttcgaaga aattctcagc
     1801 tggctaattc agtcatgcaa actctgctct cacagttaaa acaattctat gagccggaac
     1861 ctgatatgct gccacctctg aaattagaag cttgtattct gacccaagga gatcagatct
     1921 ctctacagga accactggat tgtctgcttt gttgtattca acactgtttg gcctggtata
     1981 agagtagagt gatgccccta cagcagaaag aagaggagga agaagaagag ggattctacc
     2041 aagacttaga tgatatgttg gagtctatta ctagtagaat gattaagagt gaactagagg
     2101 actttgaact ggacaaatca gcagattttt ctcagagcac tggtattggc atcaaaaaca
     2161 atatctgtgc ttttcttgtt atgggagttt gtgaggttct aatagaatat aatttctccg
     2221 taagtaattt cagtaagaat aagtttgagg aggttctgag cttatttatg tgttacaagg
     2281 aactctctga catccttaat gaaaaagctg gtaaaggcaa aactaaaatg gccagcaaaa
     2341 caaatgatag ttttttgtcc atgaaatttg tgtctgatct tctcaccgct cttttcaggg
     2401 acagtaccca aagtcatgaa gagagcctgt ctgttctaag gtccagcaat gagtttatgc
     2461 gctatgcagt gagtgtggct ctgcagaagg tacagcagct aaaggaaatg gggcatgtga
     2521 gtggccctga tggcagaaac ccagagaagg tctttcagaa cctctgtgac ataactcggg
     2581 tcttgctttg gagatacact tcaattccta cttcagtgga agagtcggga aagaaagaga
     2641 aaggaaagag catctcgctg ctgtgcttgg agggtttgca gaaaatattc agtgtcgtgc
     2701 aacagttcta ccagcccaag attcatcagt ttctcagggc tctggatgcc acagataagg
     2761 aggaagaggt ggaagtcagt gtcactcaaa gagcagcatt ccagatccgg cagtttcaga
     2821 ggtccttgtt gaatatactt agcagccaag aagaagactt taacagcaaa gaagccctcc
     2881 tactcgttac tgttctctcc aacttgtcca agctgctgga gccctcctcc actcagtttg
     2941 tgcagatgtt atcctggaca actaagattt gcaaggaaaa cagctgggag gatgcctcat
     3001 tttgcaaggg cttgatgaat ttgctcttca gcctccatgt tttgtgtaag agtcctgtga
     3061 ccctgctgcg tgacttgtcc caggatatcc atggacatct tggagacata gaccaggatg
     3121 tagaagtgga gaaaacaaac cactttgcag tggtgaattt gagaacagct gcccctactg
     3181 tctgtttact tcttctgagt caggctgaga aggtcctaga agaagtggac tggttaatca
     3241 ccaagcttaa gggacaagtg agccaagaaa ttataccaga agaagcctct tctcaggcaa
     3301 ccctaccaaa tcatcccatt gagaaagcca tcatcataca attgggaact ctgcttacat
     3361 ttttccacga gctggtgcag acggccctgc catcaggcag ctgtgtggac accttattaa
     3421 aggacctttg caaaatgtac accattctta cagcgcttgt cagatattat ctccaggtgt
     3481 gtcagcactc cagaggaatt ccgaaaaata tggagaagct ggtgaagctg tcaggttcgc
     3541 acctgacccc gctatgctat tctttcattt cttacataca gaacaagaag agtaagagcc
     3601 taaaacatgc aggagaaaag aaaaaggaga aaaccgctgc tgggcccaca gctgtggcca
     3661 gagctcttcg ggaaaccaag ccaatcccta atctcatctt tgccattgaa cagtatgaaa
     3721 aatttctcat ccacctttct aagaggtcca aggtgaacct gatgcagcat ataaagctca
     3781 gcacctcacg agacttcaag atcaaaggga acatcctgga catggttctt caagaggatg
     3841 aggatgaaga tgaagagggc actgcatcag agcacgaggg acagaacaaa gaaccagcca
     3901 agaagaaaag gaaaaaataa atgaaacgcc tgagttaatg tgaa
//
LOCUS       XM_032620225            4448 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA polymerase gamma, catalytic subunit
            (POLG), transcript variant X1, mRNA.
ACCESSION   XM_032620225
VERSION     XM_032620225.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4448
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4448
                     /gene="POLG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 10 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116747702"
     CDS             324..3995
                     /gene="POLG"
                     /codon_start=1
                     /product="DNA polymerase subunit gamma-1 isoform X1"
                     /protein_id="XP_032476116.1"
                     /db_xref="GeneID:116747702"
                     /translation="MSRLLWRKVAGATVGPGPVPAPGRWVSSSASGPVPSDGQPQPPP
                     QPPPQPVPSSEGGQLRHNPLHIQMLSRGLHEQIFGHGGEMPGEAAVRRSVEHLQKHGL
                     WGQPAAPLPDVELRLPPLYGGSLDQHFRLLAQKQSLPYLEAANLLLQAQLAPRPPSWA
                     WAEGWTRYGPAGEAEPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSRRL
                     VEERYSWTSQLSPADLIPLEVPASAGGPTQRDWQEQLVVGHNVCFDRAHIREQYLIQG
                     SHMRFLDTMSMHMAISGLSSFQRSLWMAAKQGKRKARHPTQRGQKSQSKANGPAISSW
                     DWLDISSVNNLADVHSLYVGGPRLEKEPRELFVKGSMKDIRENFQDLMQYCAQDVWAT
                     YEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQSTYEELQWEMKK
                     SLMDLANDACQLLSGERYKEDPWLWDLEWDLQEFKQKKAKKVKAKEPAAASKLPVEGP
                     KAPGDPKDQEDPGPPSEEEEFQRDVMARACLEQLRGTTELLPKRPQHLPGHPGWYRKL
                     CPRLDDPAWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKV
                     PPGSGLTSAGVACPYTAIESLYRKHCLEQGKQQLEPQEADLAEEFLLTDSGTMWQTVE
                     EMGCLEVEAEARMENLRVAVPGQPPALTAAGGPKASQPAYHHGNGPYNDVDIPGCWFF
                     KLPHKDGNSCNVGSPFAKDFLPKMEDGTLQAGPGGARGPRALEINKMISFWRNAHKRI
                     SSQMVVWLPRSALPRAVTRHPHYDEEGRYGAILPQVVTAGTITRRAVEPTWLTASNAR
                     PDRVGSELKAMVQAPPGYILVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGR
                     KSRGTDLHSKTAATVGISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKA
                     RQMYAVTKGLRRYRLSDEGEWLLRELDLPVDRTEDGWVSLQDLRKIQREASRKSQWKK
                     WEVVAERAWMGGTESEMFNKLESIAMSDTPRTPVLGCRITRALEPSAVQGEFMTSRVN
                     WVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQIT
                     NLLTRCMFAYKLGLNDLPQSVAFFSTVDIDQCLRKEVTMDCKTPSNPTGMERRYGIPE
                     GEALDIYQIIELTKGSLEK"
     misc_feature    654..1532
                     /gene="POLG"
                     /note="DNA mitochondrial polymerase exonuclease domain;
                     Region: DNApol_Exo; pfam18136"
                     /db_xref="CDD:465664"
     misc_feature    1581..>1709
                     /gene="POLG"
                     /note="Family A polymerase primarily fills DNA gaps that
                     arise during DNA repair, recombination and replication;
                     Region: DNA_pol_A; cl02626"
                     /db_xref="CDD:470638"
     misc_feature    2655..3902
                     /gene="POLG"
                     /note="Pol gammaA is a family A polymerase that is
                     responsible for DNA replication and repair in
                     mitochondria; Region: DNA_pol_gammaA; cd08641"
                     /db_xref="CDD:176478"
     misc_feature    order(2676..2678,2688..2690,2697..2702,2838..2846,
                     2850..2852,2856..2867,2961..2966,3078..3080,3120..3122,
                     3132..3134,3576..3578,3597..3599,3690..3698)
                     /gene="POLG"
                     /note="active site"
                     /db_xref="CDD:176478"
     misc_feature    order(2676..2678,2688..2690,2697..2702,2838..2846,
                     2850..2852,2856..2867,3156..3158,3573..3578,3585..3587,
                     3597..3599,3690..3698)
                     /gene="POLG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176478"
     misc_feature    order(2961..2966,2970..2972,3078..3080,3120..3122,
                     3132..3134,3696..3698)
                     /gene="POLG"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176478"
ORIGIN      
        1 gagtgagcgg ggcgcagacg ggaagttgcg gctgccagcg aggcggactg cttcggtgca
       61 ggccacaggc caccccgagg ctgcataggc cgcgcggagg gagacgccgc gtcgccggcc
      121 tggggtcggg agccgcagac caggaagcac cgggcagact gaggatttgt gggtggaagg
      181 caggcatggt cagaaccatt tcactgacag gaaaacagag acaggacgtg tctctctcca
      241 cgtctctcag ccagtagaag ctgccaagct ggagcccaaa gccaggtgtg ctgactccca
      301 gcggggggct ccctgcacca accatgagcc gcctgctctg gaggaaggtg gccggcgcca
      361 ccgtcgggcc agggccggtt ccagctccgg ggcgttgggt ctccagctcc gcctccggcc
      421 ccgtccccag cgacgggcag ccgcagccgc cgccgcagcc gccgccgcag ccagtgccgt
      481 cctcggaggg cgggcagctg cggcacaacc cattgcacat ccagatgctc tcgagagggc
      541 ttcacgagca aatcttcggg cacggcgggg agatgcccgg cgaggccgcg gtgcgccgca
      601 gcgtcgagca cctgcagaag cacgggctct gggggcagcc ggccgcgccc ttgcccgacg
      661 tggagctgcg cctgccgccc ctctacgggg gcagcctgga ccagcacttc cgcctcctgg
      721 cccagaagca gagcctgccc tacctggagg cggccaactt gttattgcag gcccagctgg
      781 ccccccggcc cccgagctgg gcctgggcgg agggctggac ccggtacggc cccgcggggg
      841 aggccgaacc cgtggccatc cccgaggagc gggccctggt gttcgacgtg gaggtctgct
      901 tggcagaggg aacttgcccc acattggcgg tggccatatc cccctcggcc tggtattcct
      961 ggtgcagccg gcggctggtg gaagagcgtt actcttggac cagccagctg tcgccggctg
     1021 acctcattcc cctggaggtc cctgccagtg ccggcggccc cacccagcga gactggcagg
     1081 agcagttagt ggtggggcac aacgtgtgct tcgaccgggc ccatatcagg gagcagtacc
     1141 tgatccaggg ctcccacatg cgcttcctgg acaccatgag catgcacatg gccatctcag
     1201 ggctaagcag cttccagcgc agtctgtgga tggcagccaa gcagggcaag cgcaaggccc
     1261 ggcaccccac acagcgaggc cagaaatccc agagcaaagc caacggccca gcgatctcat
     1321 cctgggactg gctggatatc agcagtgtca ataatctggc agacgtgcac agcctctacg
     1381 tgggggggcc tcgcttagag aaggagcccc gcgagctgtt tgtcaagggt agcatgaagg
     1441 acatccgtga gaacttccag gacctgatgc agtactgtgc ccaggacgtg tgggccacct
     1501 atgaggtttt ccagcagcag ctaccgctct tcttggagag gtgtccccac ccggtgactc
     1561 tggctggcat gttggagatg ggtgtctcct acctgcccgt caaccagaac tgggagcgtt
     1621 acctggcgga ggcacagagc acctacgagg agctccagtg ggagatgaag aagtcactga
     1681 tggacctggc caacgatgcc tgccagctgc tctcgggaga gaggtacaaa gaagatccct
     1741 ggctctggga cctagagtgg gacctgcagg aatttaagca gaagaaggca aagaaggtga
     1801 aggcgaagga gccggccgca gccagcaagt tgcctgtcga ggggcccaag gctcctgggg
     1861 atcccaagga tcaggaagac cctggccccc ccagtgagga ggaggagttt cagcgagatg
     1921 tcatggcccg cgcctgcttg gagcagctca gggggaccac agagctcctg cccaagcggc
     1981 cccagcacct tcctgggcac ccagggtggt atcggaagct ctgtccccgg ctagatgacc
     2041 ctgcgtggac cccaggcccc agtctcctca gtctccagat gcgggtcaca cctaaactca
     2101 tggcgctgac ctgggacggc ttccctctgc actactcgga gcggcatggc tggggatact
     2161 tggtgcccgg gcggcgggac aacctggcta aggtgccacc aggcagcggc ctaacgtcag
     2221 ctggggtggc ctgcccctac acagccatcg agtccctgta caggaagcac tgtcttgaac
     2281 aggggaagca gcagctggag ccgcaggagg cagacctggc tgaggagttc ctgctcaccg
     2341 acagcggcac catgtggcag acggtggaag aaatgggctg cttagaagtg gaggccgagg
     2401 ccaggatgga gaacttgcga gtggcagttc caggtcaacc cccagctctg actgctgctg
     2461 gtggcccaaa agccagccag ccagcttatc accatggcaa cggaccctac aatgatgtgg
     2521 atatccccgg ctgctggttc ttcaagctgc ctcacaagga tggtaacagc tgcaatgtgg
     2581 gcagcccctt tgccaaagac ttcctgccca agatggagga cggcaccctg caggctggcc
     2641 caggaggtgc cagggggccc cgtgccttgg aaatcaacaa aatgatttct ttttggagga
     2701 atgcccataa acgtatcagc tcccagatgg tggtgtggct gcccaggtca gctctgcccc
     2761 gtgctgtgac caggcaccca cactatgatg aggaaggccg ctatggggcc atcctgcccc
     2821 aggttgtgac cgctggcacc atcactcgac gggctgtaga gcccacatgg ctcactgcca
     2881 gcaacgcccg gcctgaccga gtaggcagtg agttgaaggc catggtgcag gccccacccg
     2941 gctacatcct cgtgggtgct gatgtggact cacaggagct gtggattgca gctgtgcttg
     3001 gagacgccca ctttgccggc atgcacggct gcacagcctt tgggtggatg acactgcagg
     3061 gcaggaagag caggggcacc gatctacaca gtaagacagc tgccacagtg ggcatcagcc
     3121 gtgagcacgc caaggtcttc aactatggcc gcatctacgg ggccgggcag cctttcgctg
     3181 agcgcctgct aatgcagttc aaccaccggc tcacgcggca ggaggcggct gagaaggccc
     3241 gacagatgta tgcggtcacc aagggcctcc gcaggtatcg gctgtcagat gagggcgagt
     3301 ggctgctgag ggagttggac ctccctgtgg acaggaccga ggatggctgg gtttccctgc
     3361 aggatctacg caagatccag agagaagctt ctaggaaatc acaatggaag aagtgggagg
     3421 tggttgctga acgagcctgg atggggggca cagagtcaga aatgttcaat aagctggaga
     3481 gcattgcgat gtctgacaca ccacgtaccc cggtgctggg ctgccgcatc acccgagccc
     3541 tggagccctc tgctgtccag ggggagttta tgaccagccg tgtgaattgg gtggtgcaga
     3601 gctccgctgt ggactactta cacctcatgc ttgtggccat gaagtggctg tttgaggagt
     3661 ttgccattga tgggcgcttc tgcatcagca tccacgatga ggttcgctac ctggtgcggg
     3721 aggaggaccg ctaccgcgct gcccttgccc tgcagatcac caacctcttg accaggtgca
     3781 tgtttgccta caagctgggt ctgaatgact tgccccagtc agtcgccttt ttcagtacag
     3841 tcgatatcga ccagtgcctc aggaaggaag tgaccatgga ttgtaaaacc ccttccaacc
     3901 caactgggat ggaaaggaga tacgggattc ccgagggtga agcactggat atttaccaga
     3961 taattgaact caccaaaggc tccctggaaa aatgaagcca gcctggacca tagctctgtc
     4021 tggaggctct gtatttgctc ccgtggagct tcatcggggc agtgcaggct cctaaactca
     4081 ggctttcagc tgtgcttttt tgcaaaaggg cttgcctaag gccagccatt tttcagtagc
     4141 aggacctgcc aagaatgatt gcctctaact gatggtgcaa ttagttcaga accaagatgc
     4201 caacactggt gcaggctgta ggacaagggg gcattgttgc ttgctgggtg aaaagaaagc
     4261 agaagcccca aagttcacat taactcaggc gtttcattta ttttttcctt ttcttcttgg
     4321 ctggttcttt gttctgtccc tcgtgctctg atgcagtgcc ctaggggaga gaagtaacgc
     4381 tctaaatgtg ataagcctgc tcggaggcag tggaaataaa aacaaagatc ctttatcttc
     4441 tcatcaaa
//
LOCUS       XM_032620234            4378 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA polymerase gamma, catalytic subunit
            (POLG), transcript variant X2, mRNA.
ACCESSION   XM_032620234
VERSION     XM_032620234.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4378
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4378
                     /gene="POLG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 long SRA reads, 10 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 5 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116747702"
     CDS             257..3928
                     /gene="POLG"
                     /codon_start=1
                     /product="DNA polymerase subunit gamma-1 isoform X1"
                     /protein_id="XP_032476125.1"
                     /db_xref="GeneID:116747702"
                     /translation="MSRLLWRKVAGATVGPGPVPAPGRWVSSSASGPVPSDGQPQPPP
                     QPPPQPVPSSEGGQLRHNPLHIQMLSRGLHEQIFGHGGEMPGEAAVRRSVEHLQKHGL
                     WGQPAAPLPDVELRLPPLYGGSLDQHFRLLAQKQSLPYLEAANLLLQAQLAPRPPSWA
                     WAEGWTRYGPAGEAEPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSRRL
                     VEERYSWTSQLSPADLIPLEVPASAGGPTQRDWQEQLVVGHNVCFDRAHIREQYLIQG
                     SHMRFLDTMSMHMAISGLSSFQRSLWMAAKQGKRKARHPTQRGQKSQSKANGPAISSW
                     DWLDISSVNNLADVHSLYVGGPRLEKEPRELFVKGSMKDIRENFQDLMQYCAQDVWAT
                     YEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQSTYEELQWEMKK
                     SLMDLANDACQLLSGERYKEDPWLWDLEWDLQEFKQKKAKKVKAKEPAAASKLPVEGP
                     KAPGDPKDQEDPGPPSEEEEFQRDVMARACLEQLRGTTELLPKRPQHLPGHPGWYRKL
                     CPRLDDPAWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKV
                     PPGSGLTSAGVACPYTAIESLYRKHCLEQGKQQLEPQEADLAEEFLLTDSGTMWQTVE
                     EMGCLEVEAEARMENLRVAVPGQPPALTAAGGPKASQPAYHHGNGPYNDVDIPGCWFF
                     KLPHKDGNSCNVGSPFAKDFLPKMEDGTLQAGPGGARGPRALEINKMISFWRNAHKRI
                     SSQMVVWLPRSALPRAVTRHPHYDEEGRYGAILPQVVTAGTITRRAVEPTWLTASNAR
                     PDRVGSELKAMVQAPPGYILVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGR
                     KSRGTDLHSKTAATVGISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKA
                     RQMYAVTKGLRRYRLSDEGEWLLRELDLPVDRTEDGWVSLQDLRKIQREASRKSQWKK
                     WEVVAERAWMGGTESEMFNKLESIAMSDTPRTPVLGCRITRALEPSAVQGEFMTSRVN
                     WVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQIT
                     NLLTRCMFAYKLGLNDLPQSVAFFSTVDIDQCLRKEVTMDCKTPSNPTGMERRYGIPE
                     GEALDIYQIIELTKGSLEK"
     misc_feature    587..1465
                     /gene="POLG"
                     /note="DNA mitochondrial polymerase exonuclease domain;
                     Region: DNApol_Exo; pfam18136"
                     /db_xref="CDD:465664"
     misc_feature    1514..>1642
                     /gene="POLG"
                     /note="Family A polymerase primarily fills DNA gaps that
                     arise during DNA repair, recombination and replication;
                     Region: DNA_pol_A; cl02626"
                     /db_xref="CDD:470638"
     misc_feature    2588..3835
                     /gene="POLG"
                     /note="Pol gammaA is a family A polymerase that is
                     responsible for DNA replication and repair in
                     mitochondria; Region: DNA_pol_gammaA; cd08641"
                     /db_xref="CDD:176478"
     misc_feature    order(2609..2611,2621..2623,2630..2635,2771..2779,
                     2783..2785,2789..2800,2894..2899,3011..3013,3053..3055,
                     3065..3067,3509..3511,3530..3532,3623..3631)
                     /gene="POLG"
                     /note="active site"
                     /db_xref="CDD:176478"
     misc_feature    order(2609..2611,2621..2623,2630..2635,2771..2779,
                     2783..2785,2789..2800,3089..3091,3506..3511,3518..3520,
                     3530..3532,3623..3631)
                     /gene="POLG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176478"
     misc_feature    order(2894..2899,2903..2905,3011..3013,3053..3055,
                     3065..3067,3629..3631)
                     /gene="POLG"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176478"
ORIGIN      
        1 cgccgttgag gggaggccgg gtgcctgagc ggcggcgcgg cccctccctc tccagtcagg
       61 gagcgaggcc ctgagctggg cggaggctgg tcccaggatt tgtgggtgga aggcaggcat
      121 ggtcagaacc atttcactga caggaaaaca gagacaggac gtgtctctct ccacgtctct
      181 cagccagtag aagctgccaa gctggagccc aaagccaggt gtgctgactc ccagcggggg
      241 gctccctgca ccaaccatga gccgcctgct ctggaggaag gtggccggcg ccaccgtcgg
      301 gccagggccg gttccagctc cggggcgttg ggtctccagc tccgcctccg gccccgtccc
      361 cagcgacggg cagccgcagc cgccgccgca gccgccgccg cagccagtgc cgtcctcgga
      421 gggcgggcag ctgcggcaca acccattgca catccagatg ctctcgagag ggcttcacga
      481 gcaaatcttc gggcacggcg gggagatgcc cggcgaggcc gcggtgcgcc gcagcgtcga
      541 gcacctgcag aagcacgggc tctgggggca gccggccgcg cccttgcccg acgtggagct
      601 gcgcctgccg cccctctacg ggggcagcct ggaccagcac ttccgcctcc tggcccagaa
      661 gcagagcctg ccctacctgg aggcggccaa cttgttattg caggcccagc tggccccccg
      721 gcccccgagc tgggcctggg cggagggctg gacccggtac ggccccgcgg gggaggccga
      781 acccgtggcc atccccgagg agcgggccct ggtgttcgac gtggaggtct gcttggcaga
      841 gggaacttgc cccacattgg cggtggccat atccccctcg gcctggtatt cctggtgcag
      901 ccggcggctg gtggaagagc gttactcttg gaccagccag ctgtcgccgg ctgacctcat
      961 tcccctggag gtccctgcca gtgccggcgg ccccacccag cgagactggc aggagcagtt
     1021 agtggtgggg cacaacgtgt gcttcgaccg ggcccatatc agggagcagt acctgatcca
     1081 gggctcccac atgcgcttcc tggacaccat gagcatgcac atggccatct cagggctaag
     1141 cagcttccag cgcagtctgt ggatggcagc caagcagggc aagcgcaagg cccggcaccc
     1201 cacacagcga ggccagaaat cccagagcaa agccaacggc ccagcgatct catcctggga
     1261 ctggctggat atcagcagtg tcaataatct ggcagacgtg cacagcctct acgtgggggg
     1321 gcctcgctta gagaaggagc cccgcgagct gtttgtcaag ggtagcatga aggacatccg
     1381 tgagaacttc caggacctga tgcagtactg tgcccaggac gtgtgggcca cctatgaggt
     1441 tttccagcag cagctaccgc tcttcttgga gaggtgtccc cacccggtga ctctggctgg
     1501 catgttggag atgggtgtct cctacctgcc cgtcaaccag aactgggagc gttacctggc
     1561 ggaggcacag agcacctacg aggagctcca gtgggagatg aagaagtcac tgatggacct
     1621 ggccaacgat gcctgccagc tgctctcggg agagaggtac aaagaagatc cctggctctg
     1681 ggacctagag tgggacctgc aggaatttaa gcagaagaag gcaaagaagg tgaaggcgaa
     1741 ggagccggcc gcagccagca agttgcctgt cgaggggccc aaggctcctg gggatcccaa
     1801 ggatcaggaa gaccctggcc cccccagtga ggaggaggag tttcagcgag atgtcatggc
     1861 ccgcgcctgc ttggagcagc tcagggggac cacagagctc ctgcccaagc ggccccagca
     1921 ccttcctggg cacccagggt ggtatcggaa gctctgtccc cggctagatg accctgcgtg
     1981 gaccccaggc cccagtctcc tcagtctcca gatgcgggtc acacctaaac tcatggcgct
     2041 gacctgggac ggcttccctc tgcactactc ggagcggcat ggctggggat acttggtgcc
     2101 cgggcggcgg gacaacctgg ctaaggtgcc accaggcagc ggcctaacgt cagctggggt
     2161 ggcctgcccc tacacagcca tcgagtccct gtacaggaag cactgtcttg aacaggggaa
     2221 gcagcagctg gagccgcagg aggcagacct ggctgaggag ttcctgctca ccgacagcgg
     2281 caccatgtgg cagacggtgg aagaaatggg ctgcttagaa gtggaggccg aggccaggat
     2341 ggagaacttg cgagtggcag ttccaggtca acccccagct ctgactgctg ctggtggccc
     2401 aaaagccagc cagccagctt atcaccatgg caacggaccc tacaatgatg tggatatccc
     2461 cggctgctgg ttcttcaagc tgcctcacaa ggatggtaac agctgcaatg tgggcagccc
     2521 ctttgccaaa gacttcctgc ccaagatgga ggacggcacc ctgcaggctg gcccaggagg
     2581 tgccaggggg ccccgtgcct tggaaatcaa caaaatgatt tctttttgga ggaatgccca
     2641 taaacgtatc agctcccaga tggtggtgtg gctgcccagg tcagctctgc cccgtgctgt
     2701 gaccaggcac ccacactatg atgaggaagg ccgctatggg gccatcctgc cccaggttgt
     2761 gaccgctggc accatcactc gacgggctgt agagcccaca tggctcactg ccagcaacgc
     2821 ccggcctgac cgagtaggca gtgagttgaa ggccatggtg caggccccac ccggctacat
     2881 cctcgtgggt gctgatgtgg actcacagga gctgtggatt gcagctgtgc ttggagacgc
     2941 ccactttgcc ggcatgcacg gctgcacagc ctttgggtgg atgacactgc agggcaggaa
     3001 gagcaggggc accgatctac acagtaagac agctgccaca gtgggcatca gccgtgagca
     3061 cgccaaggtc ttcaactatg gccgcatcta cggggccggg cagcctttcg ctgagcgcct
     3121 gctaatgcag ttcaaccacc ggctcacgcg gcaggaggcg gctgagaagg cccgacagat
     3181 gtatgcggtc accaagggcc tccgcaggta tcggctgtca gatgagggcg agtggctgct
     3241 gagggagttg gacctccctg tggacaggac cgaggatggc tgggtttccc tgcaggatct
     3301 acgcaagatc cagagagaag cttctaggaa atcacaatgg aagaagtggg aggtggttgc
     3361 tgaacgagcc tggatggggg gcacagagtc agaaatgttc aataagctgg agagcattgc
     3421 gatgtctgac acaccacgta ccccggtgct gggctgccgc atcacccgag ccctggagcc
     3481 ctctgctgtc cagggggagt ttatgaccag ccgtgtgaat tgggtggtgc agagctccgc
     3541 tgtggactac ttacacctca tgcttgtggc catgaagtgg ctgtttgagg agtttgccat
     3601 tgatgggcgc ttctgcatca gcatccacga tgaggttcgc tacctggtgc gggaggagga
     3661 ccgctaccgc gctgcccttg ccctgcagat caccaacctc ttgaccaggt gcatgtttgc
     3721 ctacaagctg ggtctgaatg acttgcccca gtcagtcgcc tttttcagta cagtcgatat
     3781 cgaccagtgc ctcaggaagg aagtgaccat ggattgtaaa accccttcca acccaactgg
     3841 gatggaaagg agatacggga ttcccgaggg tgaagcactg gatatttacc agataattga
     3901 actcaccaaa ggctccctgg aaaaatgaag ccagcctgga ccatagctct gtctggaggc
     3961 tctgtatttg ctcccgtgga gcttcatcgg ggcagtgcag gctcctaaac tcaggctttc
     4021 agctgtgctt ttttgcaaaa gggcttgcct aaggccagcc atttttcagt agcaggacct
     4081 gccaagaatg attgcctcta actgatggtg caattagttc agaaccaaga tgccaacact
     4141 ggtgcaggct gtaggacaag ggggcattgt tgcttgctgg gtgaaaagaa agcagaagcc
     4201 ccaaagttca cattaactca ggcgtttcat ttattttttc cttttcttct tggctggttc
     4261 tttgttctgt ccctcgtgct ctgatgcagt gccctagggg agagaagtaa cgctctaaat
     4321 gtgataagcc tgctcggagg cagtggaaat aaaaacaaag atcctttatc ttctcatc
//
LOCUS       XM_032620243            4331 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DNA polymerase gamma, catalytic subunit
            (POLG), transcript variant X3, mRNA.
ACCESSION   XM_032620243
VERSION     XM_032620243.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4331
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4331
                     /gene="POLG"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747702"
     CDS             330..3878
                     /gene="POLG"
                     /codon_start=1
                     /product="DNA polymerase subunit gamma-1 isoform X2"
                     /protein_id="XP_032476134.1"
                     /db_xref="GeneID:116747702"
                     /translation="MSRLLWRKVAGATVGPGPVPAPGRWVSSSASGPVPSDGQPQPPP
                     QPPPQPVPSSEGGQLRHNPLHIQMLSRGLHEQIFGHGGEMPGEAAVRRSVEHLQKHGL
                     WGQPAAPLPDVELRLPPLYGGSLDQHFRLLAQKQSLPYLEAANLLLQAQLAPRPPSWA
                     WAEGWTRYGPAGEAEPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSRRL
                     VEERYSWTSQLSPADLIPLEVPASAGGPTQRDWQEQLVVGHNVCFDRAHIREQYLIQG
                     SHMRFLDTMSMHMAISGLSSFQRSLWMAAKQGKRKARHPTQRGQKSQSKANGPAISSW
                     DWLDISSVNNLADVHSLYVGGPRLEKEPRELFVKGSMKDIRENFQDLMQYCAQDVWAT
                     YEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQSTYEELQWEMKK
                     SLMDLANDACQLLSGERYKEDPWLWDLEWDLQEFKQKKAKKVKAKEPAAASKLPVEGP
                     KAPGDPKDQEDPGPPSEEEEFQRDVMARACLEQLRGTTELLPKRPQHLPGHPGWYRKL
                     CPRLDDPAWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKV
                     PPGSGLTSAGVACPYTAIESLYRKHCLEQGKQQLEPQEADLAEEFLLTDSGTMWQTVE
                     EMGCLEVEAEARMENLRVAVPGQPPALTAAGGPKASQPAYHHGNGPYNDVDIPGCWFF
                     KLPHKDGNSCNVGSPFAKDFLPKMEDGTLQAGPGGARGPRALEINKMISFWRNAHKRI
                     SSQMVVWLPRSALPRAVTRHPHYDEEGRYGAILPQVVTAGTITRRAVEPTWLTASNAR
                     PDRVGSELKAMVQAPPGYILVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGR
                     KSRGTDLHSKTAATVGISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKA
                     RQMYAVTKGLRRSQWKKWEVVAERAWMGGTESEMFNKLESIAMSDTPRTPVLGCRITR
                     ALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRY
                     LVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSTVDIDQCLRKEVTMDC
                     KTPSNPTGMERRYGIPEGEALDIYQIIELTKGSLEK"
     misc_feature    660..1538
                     /gene="POLG"
                     /note="DNA mitochondrial polymerase exonuclease domain;
                     Region: DNApol_Exo; pfam18136"
                     /db_xref="CDD:465664"
     misc_feature    1587..>1715
                     /gene="POLG"
                     /note="Family A polymerase primarily fills DNA gaps that
                     arise during DNA repair, recombination and replication;
                     Region: DNA_pol_A; cl02626"
                     /db_xref="CDD:470638"
     misc_feature    2661..3785
                     /gene="POLG"
                     /note="Pol gammaA is a family A polymerase that is
                     responsible for DNA replication and repair in
                     mitochondria; Region: DNA_pol_gammaA; cd08641"
                     /db_xref="CDD:176478"
     misc_feature    order(2682..2684,2694..2696,2703..2708,2844..2852,
                     2856..2858,2862..2873,2967..2972,3084..3086,3126..3128,
                     3138..3140,3459..3461,3480..3482,3573..3581)
                     /gene="POLG"
                     /note="active site"
                     /db_xref="CDD:176478"
     misc_feature    order(2682..2684,2694..2696,2703..2708,2844..2852,
                     2856..2858,2862..2873,3162..3164,3456..3461,3468..3470,
                     3480..3482,3573..3581)
                     /gene="POLG"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176478"
     misc_feature    order(2967..2972,2976..2978,3084..3086,3126..3128,
                     3138..3140,3579..3581)
                     /gene="POLG"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176478"
ORIGIN      
        1 cggcgggagt gagcggggcg cagacgggaa gttgcggctg ccagcgaggc ggactgcttc
       61 ggtgcaggcc acaggccacc ccgaggctgc ataggccgcg cggagggaga cgccgcgtcg
      121 ccggcctggg gtcgggagcc gcagaccagg aagcaccggg cagactgagg atttgtgggt
      181 ggaaggcagg catggtcaga accatttcac tgacaggaaa acagagacag gacgtgtctc
      241 tctccacgtc tctcagccag tagaagctgc caagctggag cccaaagcca ggtgtgctga
      301 ctcccagcgg ggggctccct gcaccaacca tgagccgcct gctctggagg aaggtggccg
      361 gcgccaccgt cgggccaggg ccggttccag ctccggggcg ttgggtctcc agctccgcct
      421 ccggccccgt ccccagcgac gggcagccgc agccgccgcc gcagccgccg ccgcagccag
      481 tgccgtcctc ggagggcggg cagctgcggc acaacccatt gcacatccag atgctctcga
      541 gagggcttca cgagcaaatc ttcgggcacg gcggggagat gcccggcgag gccgcggtgc
      601 gccgcagcgt cgagcacctg cagaagcacg ggctctgggg gcagccggcc gcgcccttgc
      661 ccgacgtgga gctgcgcctg ccgcccctct acgggggcag cctggaccag cacttccgcc
      721 tcctggccca gaagcagagc ctgccctacc tggaggcggc caacttgtta ttgcaggccc
      781 agctggcccc ccggcccccg agctgggcct gggcggaggg ctggacccgg tacggccccg
      841 cgggggaggc cgaacccgtg gccatccccg aggagcgggc cctggtgttc gacgtggagg
      901 tctgcttggc agagggaact tgccccacat tggcggtggc catatccccc tcggcctggt
      961 attcctggtg cagccggcgg ctggtggaag agcgttactc ttggaccagc cagctgtcgc
     1021 cggctgacct cattcccctg gaggtccctg ccagtgccgg cggccccacc cagcgagact
     1081 ggcaggagca gttagtggtg gggcacaacg tgtgcttcga ccgggcccat atcagggagc
     1141 agtacctgat ccagggctcc cacatgcgct tcctggacac catgagcatg cacatggcca
     1201 tctcagggct aagcagcttc cagcgcagtc tgtggatggc agccaagcag ggcaagcgca
     1261 aggcccggca ccccacacag cgaggccaga aatcccagag caaagccaac ggcccagcga
     1321 tctcatcctg ggactggctg gatatcagca gtgtcaataa tctggcagac gtgcacagcc
     1381 tctacgtggg ggggcctcgc ttagagaagg agccccgcga gctgtttgtc aagggtagca
     1441 tgaaggacat ccgtgagaac ttccaggacc tgatgcagta ctgtgcccag gacgtgtggg
     1501 ccacctatga ggttttccag cagcagctac cgctcttctt ggagaggtgt ccccacccgg
     1561 tgactctggc tggcatgttg gagatgggtg tctcctacct gcccgtcaac cagaactggg
     1621 agcgttacct ggcggaggca cagagcacct acgaggagct ccagtgggag atgaagaagt
     1681 cactgatgga cctggccaac gatgcctgcc agctgctctc gggagagagg tacaaagaag
     1741 atccctggct ctgggaccta gagtgggacc tgcaggaatt taagcagaag aaggcaaaga
     1801 aggtgaaggc gaaggagccg gccgcagcca gcaagttgcc tgtcgagggg cccaaggctc
     1861 ctggggatcc caaggatcag gaagaccctg gcccccccag tgaggaggag gagtttcagc
     1921 gagatgtcat ggcccgcgcc tgcttggagc agctcagggg gaccacagag ctcctgccca
     1981 agcggcccca gcaccttcct gggcacccag ggtggtatcg gaagctctgt ccccggctag
     2041 atgaccctgc gtggacccca ggccccagtc tcctcagtct ccagatgcgg gtcacaccta
     2101 aactcatggc gctgacctgg gacggcttcc ctctgcacta ctcggagcgg catggctggg
     2161 gatacttggt gcccgggcgg cgggacaacc tggctaaggt gccaccaggc agcggcctaa
     2221 cgtcagctgg ggtggcctgc ccctacacag ccatcgagtc cctgtacagg aagcactgtc
     2281 ttgaacaggg gaagcagcag ctggagccgc aggaggcaga cctggctgag gagttcctgc
     2341 tcaccgacag cggcaccatg tggcagacgg tggaagaaat gggctgctta gaagtggagg
     2401 ccgaggccag gatggagaac ttgcgagtgg cagttccagg tcaaccccca gctctgactg
     2461 ctgctggtgg cccaaaagcc agccagccag cttatcacca tggcaacgga ccctacaatg
     2521 atgtggatat ccccggctgc tggttcttca agctgcctca caaggatggt aacagctgca
     2581 atgtgggcag cccctttgcc aaagacttcc tgcccaagat ggaggacggc accctgcagg
     2641 ctggcccagg aggtgccagg gggccccgtg ccttggaaat caacaaaatg atttcttttt
     2701 ggaggaatgc ccataaacgt atcagctccc agatggtggt gtggctgccc aggtcagctc
     2761 tgccccgtgc tgtgaccagg cacccacact atgatgagga aggccgctat ggggccatcc
     2821 tgccccaggt tgtgaccgct ggcaccatca ctcgacgggc tgtagagccc acatggctca
     2881 ctgccagcaa cgcccggcct gaccgagtag gcagtgagtt gaaggccatg gtgcaggccc
     2941 cacccggcta catcctcgtg ggtgctgatg tggactcaca ggagctgtgg attgcagctg
     3001 tgcttggaga cgcccacttt gccggcatgc acggctgcac agcctttggg tggatgacac
     3061 tgcagggcag gaagagcagg ggcaccgatc tacacagtaa gacagctgcc acagtgggca
     3121 tcagccgtga gcacgccaag gtcttcaact atggccgcat ctacggggcc gggcagcctt
     3181 tcgctgagcg cctgctaatg cagttcaacc accggctcac gcggcaggag gcggctgaga
     3241 aggcccgaca gatgtatgcg gtcaccaagg gcctccgcag atcacaatgg aagaagtggg
     3301 aggtggttgc tgaacgagcc tggatggggg gcacagagtc agaaatgttc aataagctgg
     3361 agagcattgc gatgtctgac acaccacgta ccccggtgct gggctgccgc atcacccgag
     3421 ccctggagcc ctctgctgtc cagggggagt ttatgaccag ccgtgtgaat tgggtggtgc
     3481 agagctccgc tgtggactac ttacacctca tgcttgtggc catgaagtgg ctgtttgagg
     3541 agtttgccat tgatgggcgc ttctgcatca gcatccacga tgaggttcgc tacctggtgc
     3601 gggaggagga ccgctaccgc gctgcccttg ccctgcagat caccaacctc ttgaccaggt
     3661 gcatgtttgc ctacaagctg ggtctgaatg acttgcccca gtcagtcgcc tttttcagta
     3721 cagtcgatat cgaccagtgc ctcaggaagg aagtgaccat ggattgtaaa accccttcca
     3781 acccaactgg gatggaaagg agatacggga ttcccgaggg tgaagcactg gatatttacc
     3841 agataattga actcaccaaa ggctccctgg aaaaatgaag ccagcctgga ccatagctct
     3901 gtctggaggc tctgtatttg ctcccgtgga gcttcatcgg ggcagtgcag gctcctaaac
     3961 tcaggctttc agctgtgctt ttttgcaaaa gggcttgcct aaggccagcc atttttcagt
     4021 agcaggacct gccaagaatg attgcctcta actgatggtg caattagttc agaaccaaga
     4081 tgccaacact ggtgcaggct gtaggacaag ggggcattgt tgcttgctgg gtgaaaagaa
     4141 agcagaagcc ccaaagttca cattaactca ggcgtttcat ttattttttc cttttcttct
     4201 tggctggttc tttgttctgt ccctcgtgct ctgatgcagt gccctagggg agagaagtaa
     4261 cgctctaaat gtgataagcc tgctcggagg cagtggaaat aaaaacaaag atcctttatc
     4321 ttctcatcaa a
//
LOCUS       XM_032620254           21915 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X1, mRNA.
ACCESSION   XM_032620254
VERSION     XM_032620254.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21915
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..21915
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 169 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     CDS             12156..13298
                     /gene="LOC116747726"
                     /codon_start=1
                     /product="uncharacterized protein LOC116747726"
                     /protein_id="XP_032476145.1"
                     /db_xref="GeneID:116747726"
                     /translation="MNERMSDWKKWTNDWKEVREEGRKEGRRERRKKEGRNSRQRGRE
                     DSSSLGSLGSRQPKGVGTREAWLLACCVLVTCTFLAGGAGSGGPLPWSATVTPWLWGP
                     FHFIALILSFPICKLGMASAPRLDGSWGRCCPACWQCPVGRAQAPGPAEGCGNWTWVT
                     CEGGFSRQGAAEGQGAGDPGGCVGPAGCAVLGGAPLTSRACAGGLGRGPVGARSPEIV
                     FPQLSEMCPGAHQPGLLRGRLPSLLESGGPGAGASQPGVCRSGPRIPAPLPWHPQSRF
                     QGLAVFSTVFRCTLCISAESAFALCVVELVLSPPDLPSPAPPAPPAGVGGCLYWRFRP
                     QGRPGSVQSPFSVPDRICALVCCVPVFVSKNEDQRPSGLLDSYLGH"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccaggta ggggctgcac ccagatgggt gctgggctga
      961 cttgagtaag cacatgcatg gtgcacgtgg tcatttccag agcactttcg atgttctgtg
     1021 cctatgttat ttctatgtcc gatgtccatg tgagtgaggt cgcctcattt acaggtgagg
     1081 atgaatttgg catcgatttg agtaattcta aaagatggag agcgagaaga cgtatttgaa
     1141 cagagtgccc ctccctaggg gacgggactg attcacgttt acagtgaggt cgctgaggct
     1201 ggaggagcgt cgttgctggc aagagaaggg gtcagagttg gaccctgggt gccatttgtg
     1261 gctgcccctt accccctgcc ccagagttac actaagagcc ctttgatttc caatcaaatg
     1321 tttgacaatg gggcagcctg tttgaaatcc cagctgccca gggtggtctt gggggtcttg
     1381 ggtggcccca atgctggtac catgtgctgg cctcacctct caataatggt gtgaccttaa
     1441 atacgttgct taacttctcc aagtctcagt tcttttcatg gcctaaatgg ggattaggga
     1501 agaaaaaaaa aaaaaggcaa cacaaaaaaa cacccgcgtt tatctacccc acagggcgct
     1561 tttgaaggcc aaatgatgta accactatga aagtgctttg taaattgctg tggaaattgc
     1621 gagatactta acaccaggaa gctgtccctg attatcgcat gcccagccct gtcccccctc
     1681 agttaataac agctagcacc cactaggttc tgtgcttgcg ctcagtaaat aaattccaga
     1741 agaaataaaa acagaattaa ttcaacaaac attttctgga ccgcctacga tatgccccgc
     1801 acaccaggcc tggtatgtga tacaaagatg atgaaaacag tctcttggaa gctaattggg
     1861 gtcctcgttt gaccggcact ttctttcgtc cccttttaag ccaaccagtt ttgtccggac
     1921 gagacaaaaa caacttgggc tgctttagag aaacccggct tggtgtagac aatagctccc
     1981 gggcttctga aaggggctga ttggattatg tggcaaatga aggtggaagg atgacttgga
     2041 aggtgacaaa tgaagtgggc ggagatctgc tgtgagttaa tccaggctat taggagggac
     2101 cttttgtctt ccagaggctg gcaggagctt ttaccactgg gttttacatc cttaatgtaa
     2161 aggacgcata atttatggtc agtgaaaacc caggccccag tgagatttga gtgggctgta
     2221 aaatcgagcc tagtgagtaa ttacagggag catttatgtc tccctttgca gttggcaaag
     2281 acctttttgc aatcatcaat tcatttgaac ctcacaactc cctgtccgga cccggggctg
     2341 gcctgagcct cctaggggaa gaggccgtca agtggccttc agattggggc gtctgaggca
     2401 tctgacacgg tcaggggaga ggcgtcccct gccctggcct ctcctgtctc agacctggcc
     2461 ttccggccag cagcgattcc ctccgaattc ctaacttggc tcggtcggca gctctgagcc
     2521 tccgggcccc tcctgctctg ctttctagcc actctctctt tcctttcgca gctaagcttc
     2581 tcgaaaggcc tgtctacact tgctgtcttc cttcctcacc tccagtttcc tctccaaccc
     2641 actgcttcct gacctcttct actccgctca tcggctgtca ctaaggtaat gactttcctg
     2701 gaggttaacc ctggacaccc tcatgggcac atgacgcgca gacacgcatc cagtgtttca
     2761 cattttccag ctccagtcac ttctatggac agacacgccc ctgtagacct cacagagtca
     2821 cctgctcctg gctttcctcc tccttagttt ctgctaggaa ctggagtatc cagacctctc
     2881 accttccgga atctgcctct tagcatctca ccctgggttg gagtctaaac cacctagagc
     2941 tgaggccttg gggtaggtca gtttttccaa gccacctttt tctcagttgc agtatagggt
     3001 gtctttacct ggcaggtcag gtgggcggtc ttgcaggtaa gattttaagt cccactcttt
     3061 gagggacttg aaataaattc aataaagtgt tcatgagaaa atacaattga ggtcatcgtc
     3121 agattttctt gtaggttaag ttcccacagg gaggaccaaa gggagaagaa agaggtgggg
     3181 ggagggggca gtgggagaga aagaagcaaa gaatagaaaa gggcaccaaa gacaaaaaaa
     3241 gtaggaaagg gagacttaga aaatatgaaa acccaccaaa acaaacaaac aaacaaacaa
     3301 aaaaccacat ccagaggaag gagtttcttc ttgggttagg caaaaagaaa gtaaacagga
     3361 aaaaggttta aaattcatta tcccagtgac aaatcccagg aagctttcaa atcaaattgc
     3421 cccattttgg gtttttaact ccttctatca ggtttaacct ctttacctcc tccatcctgg
     3481 ttaaacgccc cctcggctgg tgattaaatc ccgaagctac acggagtctt tcaatgaatg
     3541 aatggcccac agaaagagac cccccctccc cccagctgtg tttttcagtt ttattccact
     3601 ttccgccctt ttccgttaat gaacacaggg ctaatctcgg gcctcgtcga ggaagaggct
     3661 gcagacgtta atgaggtagc tgctggattc cagtattcgc cccttaagga ggcggctttg
     3721 tctgggaagg aaaaacacgc tgattatcat aataagtgct gcagggccgc ggccgcgggg
     3781 cacgggctcc gtgggtctga agccacactt ctaattttgg tgctggagcc caggattcat
     3841 tttgcttccc atttaagtct ctgcctctgt cccagcttgc gatcccttga gcggggtgga
     3901 aagttgcggg cagctttggg ccacagatag ggctgctttg cagaaagttc ctttgttcga
     3961 ccctacatgc agaccagcaa tgggccaggg cgtttcaggc ctctgggatc cgttttccca
     4021 aaagcagaga gatgggggtg cacgtttcca actctgcctc acaccagact tgtttttagg
     4081 actcactggt gttgagcctt taaggtcctc aaatgctaga aaagccaagg cttaggcata
     4141 gtccccgtag aatgatcgca gggtcagtgc ccgtggaacg ctccttccag gtcaggaaac
     4201 ggatgggtat tggtacccca gtccccccac caagggaagg gcatggttgg ggctcacatt
     4261 tggcccccac ataggatgag agggatgaga ggaccagcga tttgtcagga ccactcagat
     4321 ccagcaccag aacctgtagt cactcctttt atcccctaaa tgtccccctc ccatatgtcc
     4381 tgcacgcccc cccgcccccc ccccccaaat tctccctttc tgtcctgatc cttagactcc
     4441 caggagccca tgaatgtctt tatttttaat tgttattacc tttttttttg gccgcaccct
     4501 gcggcatgtg acatcctagc tccccgaccg gggatcgaac ccgcgccccc tgcattggaa
     4561 gcgcggagtc ttaaccactg gaccaccagg gaagtctccc agtaatcttt ttagagcaag
     4621 tgtgcctgag ttggaaactt gcccttatga atcctgagtt ttggatgttt ctcaccccaa
     4681 gacagatcaa tcaagatgag atcactccaa ttaaacttca ggctctaccc agaccttcag
     4741 ccaaatggcg gggggcgggg gggggacaac taagggaaaa gtgaggtgtt tggtgcaaga
     4801 aaacttttag ttgaaaactt ccttaactta cttgttggct aaaggttccc tggcattcat
     4861 ggatcagaat ttgatactct ttccaagtta acaaaaccaa ccctcgtcca gccccctaaa
     4921 tggaaatgtt gaaggaggcc caggtggcca gttggggcaa ctccactcct tttggtggca
     4981 gtgacccaga tgttgcctgg acttggggac tggatgaggg tgagcacctc tgagaatagg
     5041 gatcccacct acactcctcc gtgcactttt gggagagtaa aatgacagag cagttcctgg
     5101 tgtttctaaa agaggattta ttttaaatag gaaaaaaaaa ataacccata ggaccctttt
     5161 caccctcaca tacatactaa ttaaaatacg tgtcccaaag tcatcaatat tccagcacct
     5221 gagaacctgg ggagggggtg gaaggcagtc gaattcaact tctggggaca ccagcagagg
     5281 ggtctgtgct acttgctctt gagtgtatgg cagcctgttt taacctgcat cctcgtttcc
     5341 gtggtccccc ttctgtgcct ggatggatgc tgctcccagc tgcctatgca cacgggaccc
     5401 ctgtgcccca cgcttccagc ccagaggtcc tgtcaggctt cctgagtggg ccctgtgact
     5461 cccagggccc actggtctcg gcatcctccg ttaagtgaat cccagaggct caggagatcc
     5521 cctcgacccc agttcttctg attttctgtt ttttctgctt ttattgcccc tttctcttct
     5581 ccatctaccc attcttctct acttcatcac catttcctca tctggtcctc tgggggggtg
     5641 tcctaggcca gccactcctc ctttgggtgt cccagcacca gcctggcaca aagtggggtt
     5701 cagtaagagt atgtggggtg tatgtttgga caggtgagtc aatgaaggaa cttgactgcc
     5761 atacttgagc tgctaggcgg gagttgttga ggatgcaaga agttttaggt caaaagggtg
     5821 gagggtggat gtccttttac tgagaggagt gggcattgcc ccaccccagc cccatttgag
     5881 tgggggcctc accagtctca ccccttcgtt cactcatgcg tccatcccgt catccaacag
     5941 ttgatcctta ctgagcaagc ccacggtccg gccccgggct gggcacctgc caccctagcg
     6001 catcccttga tggcctctgc gtccccgggg ggtggcgggc cagggggttg cttctgccca
     6061 gggtggcctc gtggctcccg ggcgcgggag gagcggactc ccgctctgca ggcaaggcag
     6121 gtggggtggg gtgtgagggg cgggcctggt ttggccggct ggcccccttt tagttcacac
     6181 cctggggggg ggcgggggcg ggcctggaac ctgcccttct ctagggctcg ccgcaggtcc
     6241 cagccagccc ctccggccct ctcggcctcc caccccatcc cctagctgag tgctcgtggc
     6301 tgagctggac ccccgtacct gaagttcagg actgaggtgg cggcgtacgg gcagctgtgg
     6361 tgtatgtccc cttgggctct ggccacacag gtctccctct tgagttgggg tccgtgagct
     6421 ggacccctcc ctccatgatg ccttcctccc cctggggcta agtccagctc ctttgccccc
     6481 gacttgtggg ctggggcgtg tccaacgtca agggcccctg gccgggaacc tccagggagc
     6541 actacaggcc ctgcctctgc ctagctgccc acctgctctg ctctccctgg cggctcctcc
     6601 cctggctccc ccctccccct tgctaggttg actgcccacc tgtggctccg ctttccccac
     6661 ctgacccatt tccccttctc tgtgccccag tcactgggct tgggaccctc tgggtctcac
     6721 ccatccagcc ctctacctaa caggttggtt ttcctcgctg agcccacacc tgtggttacc
     6781 tggccctgcc tgctgccccg cccacctccc acctgcttgc ctttcgcctg cctctccccc
     6841 agggcaagga ggccctcccc ctcagggtcg cccaagtttc cggttggtct ccagtgctcg
     6901 tggcacccct cccctaccat cctcagaggc ctcctcccat gggcctggcc tcccgggctc
     6961 tgagtgcctg tgggctgctg ccagacctct gtcctgctcc cttcccccca ccccaatccc
     7021 cccagactgc ttgtcatcat gtcctaccgg gcctgcctgt acggccgtcc tgtatccacg
     7081 agtcaggctc tgccttgccc ccggcctcgt ggccggtctg ggggctgcca cctggcctgt
     7141 cgcttctgtt cttgtgcttc tcttcttgta ccttctcctg tcattggcat ccctacgagc
     7201 cacctccctc caccgaaaac caggctgcag gtcagcccgt cctcgacacc ctggcggcga
     7261 cagtcggctg aagaactgga cggaagaggc aggagagttg ccctggacca gcgctccttc
     7321 agaacggtca cctggcatct catgcccacc tggtgccccg tgactccctc ctggtttggg
     7381 ctgaagccgt ctcgaatcct ccgtgggaca ggaccgtgga cacgcaaccc cagtaccctc
     7441 cagctccaaa atcggcagac taggatggaa gtggcctagc tggggggccc ttcaaagggc
     7501 caaggagaaa acgcgggcca agagaccagc ctctcaaacg ggcttcgagc tgcagtgacc
     7561 ttcacttacc ttccccccct tgaaatgtct ggaaaacgga atggacagat tttctgtctt
     7621 caaagtttcc ggctaaacct cttcaagttc tttattgttt gggactgaga cactcagcaa
     7681 tggtaatggg tagttccttt tgtatttgcc ttgaaaggcc aaaatatttt tatatggcta
     7741 cagacaaagc catctgtttt aagatgaact ctatgtccgt cgtttcccac cggggagatc
     7801 gtgtataccg tgtgtgtctc tgtgcactcc tgggtcttga aacaggtttc tcatggggat
     7861 ggccattcac aggggtccac ggggaagcac ctgccccacc aagggggcct ggggactctg
     7921 accctcatct gtgtaggatg tgacccccgg gggggcggcg ggtgttctgg ctgcactaac
     7981 atgtactctg cctgtgcctg catccgccat gcatatgtgt caaggactgt gggttgtgtg
     8041 caccttggtg ggaagaagct ggaaggtcaa atatactgtg aatgttctat tgttctggtc
     8101 gggaggtcat tttgctgggt tctgttacct ggtccaaata agtgaatgga tgaataaacg
     8161 aatgaaggcg tgaaagagtg aagaaactaa taaataggta aagaagcgta ccctgaagga
     8221 gatccaattt gaggcacagg agctcgatag ataagtcaat aaagcattga atcagtatat
     8281 aaacagggcc aggcaggaac cgatgtcagg tcatcgtgga ctaagggaac acgtacaatt
     8341 caagtatgta gcgcctaaag tttgtccata aaagaataaa gcctagatga aagaatgaat
     8401 aagaagtcga gaggcataaa ccagtagtga gggtgagatt atgcggccca tcaaagtgaa
     8461 aagatgcaag agaaagggca cggacggttg aaaggaagaa gaaaaacgga aagacgcaaa
     8521 ataataacta agcaggaaga tcacttttaa aattaggggg tgagaaaata tataaggagg
     8581 actatgtcag gttattaaga gccaagcatt aggattagtc cagatacatg ctccagccat
     8641 agaaaaaaaa gagaaacaac agaggaagag ttcaaaaggt agttaaaacc gaaaaaggac
     8701 ccaggggacc agaggtgaga gttaacttta accaaatttt ttctaactct gggcacacat
     8761 aaataaataa acactgaaaa gaaagaaagc caaaaaaaga aaaaaaaagg agaaaggaaa
     8821 ggatgggatg aataagtagt ggacgtacgt ggacccagat gggagcgtgg caggaggggt
     8881 ttcgagtcat ccagtcctgg gacctgaggt ctgttccacg aaaggactaa aaaagagaga
     8941 gaacaaaata aagcatctaa ataaaaacca agaaatatgg aagaaaaagt aacaagtgtt
     9001 cagtccagga atacattagt gggtgaataa ataaacatat aaaagaaggt ggtgctagga
     9061 gtcgaggtgc aggagactgt catgaatcaa ggttggtcca gttctaaaag ccgcagtact
     9121 atcagaacat aataagcatc tccataaaca agtgaatgag catctaaaga aacaaagaca
     9181 cgatgaagtg aggcagggag gggccatggc cacaggcact cctgaggggc ctgttggaag
     9241 gttgtaatta atcttcgcca ctgtctgggc accaaagatc cgggaggagg aaagaagaca
     9301 gacgagaaag gaggagattt ggaaagctgc aacgaaagag agaaagaaag agttaagagg
     9361 tggtaaatgg gtatattctt ggaagagggt taggctaaga gtggtaaaaa aggaccagcc
     9421 ccaactgtag atcacaatgg gtcaaaatct gggcactcgt tccgttagta gaggagtgta
     9481 tacctaataa gaagagaaac acagcaggaa ggaagaatgg tatgaaggaa tgaaggaagg
     9541 aaggaaggaa cgagacgtgg agaggcaggg ccccaggatg ccgtttgcag gtaacgttat
     9601 aggattcatc acttcatggc acctgagcgc cgacgaatga aagaatgcaa gaaagaaaga
     9661 gtgagagagc gaaagagaga aacagtgaaa atgggagaga aatgataaat cagagactaa
     9721 attagaaatg aaaaaggaaa aaaggagaaa ggtaatatat taacagacag atagataaat
     9781 acatatatag gagagagcag ctctaggagt aagaatgaga ggggggcctg aaccaagcac
     9841 agtgacgaat tcacatctgg gcttctgaga tgggccgcca cctacccaac caggaggcag
     9901 ttcaaagctg aaatgcataa gggaggacct cagtgaggcc agggagggga aggcccactg
     9961 cttgtagatt atcatgtatc cagttaggtg cccctgccag ccagaagtgt agaaacaatc
    10021 accaaaaaga aagaaaacct gaatggatgc acaaatgcgt gaatgcaaga gtgagtgaga
    10081 aaaaagattt gcagtgacca aggaggccgg tcttgcaggg gtgttaggat tcatccagtc
    10141 cctggtgcct gatctccaag agaaggaaag gcggtaaaaa aagaaaggct gagagactgg
    10201 tagaaaaaaa atttgagatt ggagaaaaaa ataaaacaat ttaaaaaagg agtaaagaag
    10261 gtaataaatt agcaagccat gcagtgaagt ctgtgagaag ggactggttt agcacagacc
    10321 atccacatta attcaaatct ccggccccga agttgataaa caataaaaac aatcacataa
    10381 ataaatgcct gaagggataa attcacacgt tccatgagaa tgtgagaaaa agtttgaaaa
    10441 attataggag ggactgggag aaagaaagat gaaagaaaag aaaagaaaag agacctatgg
    10501 aagaagaggc acttcctgga taagtactta catataataa acaaatatta ttcattaaat
    10561 acaataatta gtaagagctg aggttcatca taaagaaaga ataagtagag gcatggctgt
    10621 gtgaacaaat gaatgagaag gatgattttg attaattcac gtctgcaccc gaggctcacg
    10681 ggaataaaag aatgcaaaaa agagagcggt gaaggagggg cgtagacaat tatgacagga
    10741 tggatattag caacaaaaac atattgaagg aataaatcaa tacgtacata attctacgag
    10801 agagagggcc atgttagaac aaaaaaacga gatggcaccg cgagccagga attatgactg
    10861 attcaaaact gggctcttga gatagttaaa taaagcctca accaaatcac cagtatgagg
    10921 aattaacaaa caaaagcgag ccccacatgg accggtgctg agaaggctcc aggaaccaca
    10981 gattatggtt aatccaattc tgtgcacctg aggtccataa ataaaagaat aaatattgaa
    11041 ataaaagagt gacagaaaga atgaatggac ccatgaacaa ctgaattaga aatggaaatg
    11101 cctggaacgg ccaggagtgc gttgcccatg ggattgtcac tcatctcact ccggacacct
    11161 gaggttccta agagtgaaaa gatgcaagaa aaaaaacaac aaaaaaaccc atcagggagt
    11221 caaagaaaga ggtgagggaa ggcaaagtga aacaaagtga aagagaaagg cggggtgggg
    11281 gagggactaa taaaaagcta acgaagatat gggtgtgtct gagaggagga tgtgttagga
    11341 ttagggatga ggtcatcatc aatcctaatg atggatgaga tcatccaatc ccccttttta
    11401 gggcaaggga ggatggagag atgaaaaaaa aaagaagtga aaaaaggaga aaggaaggat
    11461 gataaacctc caaccaaggt gataaatggt tagttaaaag agaggttgtc tgagcaggga
    11521 ttataattag tttacatacg tactccttaa atagataaat acatcacacc tttccaagaa
    11581 taaatgaaaa atagaggaaa tacccgaccc aaagacaagg ctgcatcttc caacctttta
    11641 tcatctttat gtaataaaat atatgcaatt gaggtccata aataaaagaa taaatagcaa
    11701 agtgtaaaag gtgactaaag gcgaggaaga aagatagcaa aggcaaataa acacatgggc
    11761 caacgatggt tattttgcac atgcagtttt gactaataca gttatttccc aggagactgg
    11821 taagtaaaag aatacccaaa ataagaaaga aaggaagggc aaatgcacga gtgcataagt
    11881 gaatgaatga atgagtgaga ggtggtgctg cctggaccag ggacaggagg atgtcgctcg
    11941 cgggagcctg atttatcctt ctgtgcacct gagtttgtaa gaatgaagga acggaaggaa
    12001 gagtgagaga aagggagaaa tacaaaagaa aggaataagg aatcaaaata atgtataaac
    12061 gaataaatag gagaagggag agcttcatga acgaggggct gtgattaatc gaaagtcgtg
    12121 ctgttgaagt cggtaaataa aggcgtcaaa tctaaatgaa tgaacgaatg agtgactgga
    12181 agaaatggac gaatgactgg aaggaagtga gggaggaagg aaggaaggag ggaaggaggg
    12241 aaagaaggaa aaaggaagga agaaatagta ggcagagagg gagggaggac tcttccagtt
    12301 tggggtccct gggttcccgc cagccgaagg gagtgggtac cagggaggcg tggctcttgg
    12361 catgttgtgt gcttgttacc tgcactttct tggcgggagg agctggctca ggaggaccct
    12421 tgccttggag cgccactgtc acaccctggc tgtgggggcc atttcacttc attgctctca
    12481 ttctcagttt ccccatctgt aaactcggaa tggcatcagc tccccgcttg gacggatcgt
    12541 ggggcagatg ctgtcctgcg tgttggcagt gccccgtcgg aagggctcag gccccgggcc
    12601 ctgccgaagg ttgtgggaac tggacgtggg tcacctgcga gggaggcttt tcccgccagg
    12661 gggcagcaga gggtcaggga gcaggagacc ctgggggctg tgtgggcccc gccggctgcg
    12721 ctgtcctggg aggggcgcca ctcacatcca gggcctgtgc aggtggcttg ggaagggggc
    12781 cagtaggggc cagatcacca gaaatcgtgt tcccgcaact ttccgaaatg tgcccgggag
    12841 cccaccagcc cggtcttcta cggggtaggc tgccttccct tctcgagtca gggggtcccg
    12901 gggcaggtgc ctctcagccc ggggtttgca gaagtggtcc caggatcccg gcccccttgc
    12961 cttggcatcc ccagagccgg tttcaaggcc ttgctgtctt ctcgactgtt ttccgatgta
    13021 ctctctgtat ttcggcggaa agcgcgtttg cactgtgtgt tgttgaactt gtcctctccc
    13081 ctcctgacct gccttccccc gccccccccg ccccccccgc cggggttggg ggctgtttgt
    13141 actggcgctt ccgaccccag ggacgccctg gttctgtgca gtctcctttc tctgtaccgg
    13201 acaggatttg tgcacttgtg tgttgtgtgc ctgtgtttgt ctctaaaaat gaggaccaga
    13261 ggccctctgg acttctcgat tcctatttgg gacattaaaa aaaaaaactg gattcctaac
    13321 aagcgccctg aacaggagga gccagcttgg ctggacccag gatccgtggc tgggagagcg
    13381 gggagcgcag tgggggtcgg gtgcggctgg ggctagcgtt ttgcctggtg ggtgggaggt
    13441 gccatgtgtc tgggccacgt gagcagggcc tcgtgggcct gaggtggtgc tggggcttca
    13501 gggctctgca cgcttattaa ccctgaagac acctgctcag agagggtctc cagagagccc
    13561 cccaaacagc ccaggtgtca ttgtgtggac cagagtgggg gtggcaggga cttggcgcag
    13621 gaagagcctg ggagggtctt tttggagaac gcttgtgtgg ctttaaaagt cagctgaggg
    13681 tcgagaagac ttagaaagta ttggggagaa gttgggggcc acggccatgt gcacagagga
    13741 aatagggagg gacaggagag caaacctctc ggggagcctt ctccccaggt ccaaagggct
    13801 gtcgaggggg tcacgtggat ggaaatgggc tgatgggaga atgccccagg ggggagggtg
    13861 ggttgggatt ggatgagttc tgtctgttta ggaatattga gggcctgagg gtcatcgggt
    13921 cagagctctt aagagcttgg gatccagcat tctaagggtc tccagttctg agatgctgag
    13981 tttcaggaca gggcttgagg gctgtagaag ccgggggtgg aatttccaca tgggccccca
    14041 tctggttctg tccacgctcg atccatgagg tccaagatgg gatctcagca ctcctctctg
    14101 atcagggctt atctcaagtg tgtgtttctt cttctcactc tttgaaaaaa agacaaattt
    14161 tgtctgttga ctttgacctt tgcatgcacc ccttgcacaa atccttcccc tggtgacacc
    14221 aggagctaca agtctccttg gatttctgta caactcccaa ctccctcctc aggaagcttg
    14281 gcctcggggc tggccttcca gagggtggag gacggaggct gggcctctgg ggcagatggg
    14341 ccaagggctc ccctgtgatc ctaatgtaaa cggtgtggat agcacatgac ctagagcagg
    14401 agatcaccca tcattcgaca tgtcacccgt ttttatttct tcccttccga ttcctgttta
    14461 cgagcacact ttttttaatg gacatctgat tttttaaatg agcgttcatt ttttaaacct
    14521 aattgccatt cttcaccaca tacacttctt ttttttttac atcttgcctt ttccacttaa
    14581 tattccatcg tcaacatttt tcttccttcc atagacttcg tcacatcact ggctgccttg
    14641 tgtctcattg agaggctatg tcaatcattc acatcaacct gctattgtta ctattgctag
    14701 gcataattca tctttttttt ttaatgttac agattatgcc acagctaatg gcttagcaca
    14761 cccacttttt ttttttcatt cttaccaatt atcttcccac acctagaaat gatcatggta
    14821 tgtcagtttc atggtatgtc agtttctcct gctaggctgt gagcccctta agggcaagaa
    14881 gcttgttgaa ttgatctttg tatctctaat gcctgaaatg ttgtagatgc taaatgttag
    14941 atgcgaggat ggaaggatgg atgaagatgt gagtgagtga gtggttggtt ggctgttaga
    15001 ggagaggagg gaaggatggg tgaataaaag gattggtgaa tgaacaaatg aacttcttag
    15061 ggttgagtct gttgaatgaa aggccgggaa tttttgtatg gatattgact aatagcggaa
    15121 ggcttacagc attttataac gtccagcgat gtattagcat tttgttatga tattgctagt
    15181 ttatctctgt taaaaagtgt tttctgtcat tttaacttgc attgctttga ttactaatga
    15241 cggttgaaca ttttcacgtg tgtttgttaa aaatttgcat tttatcttct gtgaactgtt
    15301 tgtccaagtc caccgggtca tggctttgtg atgagactgt caaggatgga acgagtgtcc
    15361 tcaggacgta gtgagccctt cctcactgga ggcattcaag gggcaggcca ggcagatacc
    15421 cgatgagggt ggctttaagg agattcaatt agtgggagtg gggttggcct agatgaccct
    15481 tcatttgact ttaggatttt gcttcttcct gggaaatggg catattccct ctgtcagccc
    15541 agcagtatct aaggccacgt ccccctggtg ggcttgtgca ttagtggttt atgaactcca
    15601 acctcatcct ctataactct tgtggggcag gaatatctct ttgaccctcc aggctccaga
    15661 gagctgtgct accgtcttgt agagttcagt ggtggacttc ccacccgccc ccctccccca
    15721 tttcacctcg aggaggacag gcccctgcac ctccacttgc cacctctcag cgcaatcagc
    15781 tgaggcgatc agctgccgtt tacgttcccg gggtcctgtg agcagatgtc ccctaggcct
    15841 gcgtgttggt ctttggggtt taattgatta aggggacatg tcggatcagg tctgataatg
    15901 aatcctcctt cagaaatggg acagttcaat tccgtgagct gaggagcaga agggacccca
    15961 tgttctcctc gggcttcccc tcacggccca ccccaaggct agccggggct caaaggtcac
    16021 cgtggccatt cggggagggc gcgtgaccca aggagggctt gcccctgcgt tccagaacac
    16081 gctctgctct cagctaaggg ccgcatcttc ccgccgaccc tctaatatag caccgagtgc
    16141 tgtttgcctg tattggaatt cctcacccac gtgtttgccc cagcatcgaa gctcgggagg
    16201 ccagtgatgc ttcccgacat gatttcgatc catccatcca tccatgcatt tggcctacgt
    16261 ctcctgacct ggcgctttgg tctttccctt tcctgaaagc aaaccttttc ctcttgggca
    16321 ggctgtgtag tgccatgggc tgtggttatg aagtgaacgc ccttatttgt ggcttctccc
    16381 tccggggtca ctgctctgag cacgtcccag ctggatgtca tctgccaccg tcacccacac
    16441 ggcttccttc cccgtggcgc tttcccatgc atcacacacc gtgagggaac caaggccggg
    16501 gtccgagagc ggcccccctc ccccgcccgt gagcggagat gtccccccac ctaggccacc
    16561 ctgcctggtg catggtccct gtcatgagct ttgccctcag cctcctccca ccagatggca
    16621 gtggttgtaa ctcatccctt cattctttcg ttcactcagt ccacaaacgt ttgaaaagat
    16681 ccgccggtgc tatactagag ctggctcaca ggacacgttc caaccatccc ctttccaagg
    16741 aaaagatgag catgtttgcc aggggccatg tttgtgtgtc agtaacaagg cggggccatt
    16801 gatttagctc ccacccctag acccgagttc tgttgaaagt ttggtagccc tctccaactt
    16861 tgttcctccc caaactgttg attagtaacc ggcaaactgt gtttcttggt gctcagaaat
    16921 catagcctgt agcctccaga ggccagaatg agagctgggg ggtctgaaac gaaaggctga
    16981 ttctgcccgt gagcaggctt tcaagtcatt agaacaccct gatctcgcac aaaggggacc
    17041 ttagagtcat tcctgtccct ttgagatttg ctaattctgg gctctattta gagaaaattg
    17101 gggaaggtga ttgcttgctt ggatggcaag gatcgtgccc catgcggggt ctgcacagaa
    17161 caatctttcc gaggcacaca gcgcttggcg aaccctggat gcagccccca gcatccatgc
    17221 aggtcccagg ccaggcggca tccaccccac ccccgccccc gcccccccgc caactccaac
    17281 ttagctcact gctacctgct tgggacaagg cgtagatcta ggggctctac tgagaattct
    17341 gtatttgctt tatcgccttg gacagtgggg gtggtggaca aagccaggac cctggagctg
    17401 gacaaacgtg cggtttaaac agatggcgac agcttgagtc tgtctcctgg tgataccatg
    17461 gcacacccac ctcgcagggc tgttgtgagg cttgatgtaa ctaggatctt gaactgcgat
    17521 tctgaaaggg tgtgcgcgtg cccccagggg tgggttgggg gtgggttgac aggccaggag
    17581 gggcagcctg attcgggcag gttagtggga aatctttttg tcaaacatgc agtgggtatt
    17641 gtgggaacga acgctaaatt tgtatggcgt tcgaaggtta gatggttgta atttgggcag
    17701 gaaccttcat gctgggtact gacgacccct ttgggcaatg ccctggaccc cctggggtac
    17761 gcgttcacac ctgtctccgg aatcggaatc ggttggaagg ccccatctgt gtcttgccta
    17821 ccgctgtgtc tggcctgtgg gcggcactta tcctccacga gagacccctc ccagcagtgt
    17881 cctcccccca aaatattagg caccagctgt caaagacact atacctctcc ccactaatgt
    17941 cccctcaccc cattcacaac atttgggctc acatgtcagc agcctgggtg cctaacacag
    18001 taccaggcca gtggtagggg tcaccttcca tttctgttga aaggatgggt aggtagatgg
    18061 tcaaataaca aaattgtaac ccaatgcaag cgacggttgt ttataacctt tactaagaga
    18121 ttgtattttg ttcctaatta acctgttaac agttgttgta tctcacggac ttttgtatga
    18181 tgtgtgttgt ttgaaaacca ggactcttgc ctctggtgtc actcgatgga actttcgctg
    18241 tgcgattaac gagtcagtgt tttgtgttag aaatgagaat ctggggggcg cttaactaac
    18301 tgtgtggtgt tgggcaagtc actcctcctt cctctctgac cctcggtctc cttttctcta
    18361 agccgtgggt caccagaaag cttactacct cacagggttg ttgtgagggc ccagggctgc
    18421 taatgaaatg ctggctgtca ctgagaatgg tcgcgtgttg ggggctgtct ggaagggaac
    18481 agggaagcct ttcctagttc caagtgaata aaaagtcagc cttgatctta tgctaagatt
    18541 ggatttccac cagtcagtgg gatgtgtaag gcagaggccc agcagtttgc tggcgtgtag
    18601 cgatgtgggc ccagggtaaa tattggtttg gttcatgagt gatggctctt tcccttcctc
    18661 ggagcctgcc ttcctctccc ctcgcatcct gagctgcttc ttgtcgcgtg cagggtgact
    18721 gctctgggtt tgccctacct gtcgctgcct ggtccgtgga ggggcttctg cagacatctg
    18781 tgggtgcccc ggggtgtttc ttagggagga aggcgggggg acagtttcga gagagcccga
    18841 gcaggttcct gggtaacatc tttagggact aaaacacttt cttctgcctt ttaagggaga
    18901 ggcccgtgct cctaatttcc tccaccccct tccttctttc cctgactgta aggtaaataa
    18961 atgagtcttc agccccctcc atgggcctgg aaccaaactt ggggctgttc cacgcccacg
    19021 agctccctgc ttgattggcg tgtgggccca ttttacagat aagcaagttg agaattgggg
    19081 accgcggagc gtcagagcca ggactgaaca gtcttccatg aaaagccgtg gggcactctt
    19141 tccacttggc cagacaagcc ctcccggtta ccgtggccag cctctgtcag cccaaatgtg
    19201 ccccagtgtg tctctgtccc catcacgtgc ctggcagtgc tcccgtggag gtcacgctct
    19261 ccagagctct gccctgctct ggaggaagtc ccaggaggca cccctgcagg ggtcattttg
    19321 gatcgggggt ctccacgtga ccacggaatt cctttcctgg cccttgtctc acgtgtgtgg
    19381 gacatcagtg ttctgctaga acatcccaga ttccatccca ggtgggcttg agctggggat
    19441 cttgttgagt ccctccctcc cggcccctcc ctctgtggaa gcctcaccac cctcctggtt
    19501 tggcctctgc ctttcacagc tgcagtgggc tctgtctgca ccacggccac cccatgtcct
    19561 tgagaacttg tccgaagctc ccgaggggcg ggccccactg tagggacagg ttggtagggt
    19621 cctcctctca gtagactgtg ggcctgtgtg taggtgtctg ctccctgatg gacctcggtc
    19681 ctgtgtgacc cagggggagg gactttctca ggtgcctggt gttttcaggg ccttgtcctc
    19741 ttgagggggg caggcctggg tccctgcctc tggagggcag gtagggagtc gaagctcagt
    19801 gaggtcgtgt ctaagcagct cttagacccc ctccctgacc ctgagaccta cgcttctctg
    19861 accctacacc ccctccctga ccctgagacc tatgcttctc tgaccctacc taacagccct
    19921 gctgtctgca ctagtaggtg cctaataggc gctcgctgac tggtaaggca gggttttagt
    19981 ggatgtgaaa agccgaattg actgttggct gatgtacacg ttgaatctgc atgcgtttct
    20041 gtaagagaaa aaggtgtgtt ttcttggcaa agactcttca gggcaaagcc tgagggtctt
    20101 ttgtctgagc cgggggctca ccccaggggg cggccgccgg acagaccatc ctgatggaaa
    20161 tagctgtctt ctgaacattg ttggaaatat ttatgtctag aataaaactt tatttgggct
    20221 aaaatgtact cctatgtgta gtggtccaag tgattttttt tattaagtac agtcgattta
    20281 caatgttgtg ttcatttctt ctgtacagca aagtgactca cgtgtacata tatatgttct
    20341 ttttcatatt cttttccatt atggtttatc acaggctatt gaccatagtt ccctgtgctg
    20401 tacagtgggt ggtccaagtg attttgatga cgtggcattc ggcaattccc aagtgggagg
    20461 tgtcctggcc ccgcccatgc cctctctggg cctcgggagc cctcgccttg gggaggggag
    20521 gtcttttacc tgaaaagtct ttgtctgtcc tcaccattgg tgacaatcag cattaacctg
    20581 taaggcacat gcccagtctg ggatgcagcc ctggtcagcc agcagatgag ggggggatcg
    20641 gaccccagac cttgattcct ttctcctcct ctcgccctcc tctccacccc ctcaagctga
    20701 ggggcggaca cttacccatt tgagttctgg ttctggcatc accatttgcc agcttagtgg
    20761 ccttgggagg gttacttgga ccaccccgag ccttggtttt cacccctgta gaatgggtac
    20821 atagtgacag tgtccgctct ggggttgctg gctcagtgcc ttgctgcact ccatatatac
    20881 tggctctgag atcaaggtct ggggctcgaa gccacctaag cacctttatg tgtgtgtggc
    20941 ctggatgagt ttgctcacct gtaatccgga aatagtcaca tctacctggc gtggttactg
    21001 tcggattcaa tgagattgtt cacgtgaaaa taaatgcttc gttacccggc ctcccagttg
    21061 gggctggcca cagcaccctg cagcctgtgg gtcctggtcg cggaagccct gggctttctg
    21121 gaactgccaa aagggggctg cagggtggag tggagggcgt caggggagca cccggccagc
    21181 tttggagggc agcgagggaa ggaagggttt gcttttcagt acagagatgg agcagcttca
    21241 gaggggacgg gattgaggtc caagtgggca ggatcaggga gaagttttag aaagaggagg
    21301 aagctgatag tttagaaaac acccaagttt aattggcaat gggttggaca ggagagctgg
    21361 ggtgggtttt agcaaggcca agcatcctag atttgggtta gtgagtggag gaccatcaga
    21421 ggttcctggt gcaggggggt gtgatgcttc tggaactctc tccgggaggg ggagaccagg
    21481 tgtggggtgc cagagctgag gggcggcagg tagagggcag gggctagtgg ctgggtgctc
    21541 acctcgcccc catggctgct gggggccagg gccctctccc cgtgtggtcc aggcccctga
    21601 gcgacccgtc tcctaaccct ctctctgctc cttgcctcca acgtgcctgt gtgcatgaga
    21661 actcgtgtcc gccagtgagc ccaggagcgg gtggccttca tcagcacctg tgtctctctc
    21721 agcctccaca gccacgggga tacctgcacg cgttcccgtg ggacaggccg gacccaaaga
    21781 ctctggaccc gggccactcc cctgcatgga cgggcgcgtc caccccgcct ccccgccctc
    21841 tgactgatgg acttcactga tctgagtgtc agacacgcgg gctggacccc tccccacccc
    21901 tcacgaaccc tgaga
//
LOCUS       XM_032620260           21890 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X2, mRNA.
ACCESSION   XM_032620260
VERSION     XM_032620260.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21890
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..21890
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 163 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     CDS             12131..13273
                     /gene="LOC116747726"
                     /codon_start=1
                     /product="uncharacterized protein LOC116747726"
                     /protein_id="XP_032476151.1"
                     /db_xref="GeneID:116747726"
                     /translation="MNERMSDWKKWTNDWKEVREEGRKEGRRERRKKEGRNSRQRGRE
                     DSSSLGSLGSRQPKGVGTREAWLLACCVLVTCTFLAGGAGSGGPLPWSATVTPWLWGP
                     FHFIALILSFPICKLGMASAPRLDGSWGRCCPACWQCPVGRAQAPGPAEGCGNWTWVT
                     CEGGFSRQGAAEGQGAGDPGGCVGPAGCAVLGGAPLTSRACAGGLGRGPVGARSPEIV
                     FPQLSEMCPGAHQPGLLRGRLPSLLESGGPGAGASQPGVCRSGPRIPAPLPWHPQSRF
                     QGLAVFSTVFRCTLCISAESAFALCVVELVLSPPDLPSPAPPAPPAGVGGCLYWRFRP
                     QGRPGSVQSPFSVPDRICALVCCVPVFVSKNEDQRPSGLLDSYLGH"
ORIGIN      
        1 gcgcagacgg cggagagctg ggatggagcg cgccgtggcc cgctggcctt ggccgcagct
       61 cctcgggaga gccggggcgc ccgcgcgaga acctccctac ttgggtctct gttcaaggat
      121 gacatcatcc gcttgcctcc ctgtcttcaa ggaccacctc tggatgccaa gctgatgcca
      181 agaggatgct gggagcatgg attcctggat gccaccagca tacaaagcag ccactggcag
      241 tgacccccag gaccaggacg acgaaggatg aagaggacca gaactgacca gctgtccctc
      301 ttggctaacg gcttagacca atgccctagt gagggggcat tggtcattaa cgccggacct
      361 ttgctatgct tctgccttga tgctatgact gcttttctat gtgtctctgc ttgtgttaac
      421 atgtcagcga cctggagggt ttccaacccc agggaggtgt cagtctttct cagtccaccc
      481 cgttgttacc cccgtgatgt tcgaatggaa gagtccctgt gggcacttct caggaggggg
      541 acctgggcca agggcttgac cagcatctca ctggccattc caaggcccag ggtgggcttc
      601 tggaatgagc gcgtgtccca acgccatgct actgaaccgc caaggacatc cccaccacct
      661 ttgagatcac cctgtccttt cgggggaacg gggttgagaa gagcaacctc ccagggtgtt
      721 gtgagtattg aatgagtcca agcagcctcg cgtagggcca ggcatagagg aggcagtcaa
      781 cagatgtttg ttgaaacagt ttggccggtc catccctacc cctctcacct gtcttacacc
      841 tcttatttat tctcccacag cgctccggac agccctagtc cacggggctc tccctgcacc
      901 aggtaggggc tgcacccaga tgggtgctgg gctgacttga gtaagcacat gcatggtgca
      961 cgtggtcatt tccagagcac tttcgatgtt ctgtgcctat gttatttcta tgtccgatgt
     1021 ccatgtgagt gaggtcgcct catttacagg tgaggatgaa tttggcatcg atttgagtaa
     1081 ttctaaaaga tggagagcga gaagacgtat ttgaacagag tgcccctccc taggggacgg
     1141 gactgattca cgtttacagt gaggtcgctg aggctggagg agcgtcgttg ctggcaagag
     1201 aaggggtcag agttggaccc tgggtgccat ttgtggctgc cccttacccc ctgccccaga
     1261 gttacactaa gagccctttg atttccaatc aaatgtttga caatggggca gcctgtttga
     1321 aatcccagct gcccagggtg gtcttggggg tcttgggtgg ccccaatgct ggtaccatgt
     1381 gctggcctca cctctcaata atggtgtgac cttaaatacg ttgcttaact tctccaagtc
     1441 tcagttcttt tcatggccta aatggggatt agggaagaaa aaaaaaaaaa ggcaacacaa
     1501 aaaaacaccc gcgtttatct accccacagg gcgcttttga aggccaaatg atgtaaccac
     1561 tatgaaagtg ctttgtaaat tgctgtggaa attgcgagat acttaacacc aggaagctgt
     1621 ccctgattat cgcatgccca gccctgtccc ccctcagtta ataacagcta gcacccacta
     1681 ggttctgtgc ttgcgctcag taaataaatt ccagaagaaa taaaaacaga attaattcaa
     1741 caaacatttt ctggaccgcc tacgatatgc cccgcacacc aggcctggta tgtgatacaa
     1801 agatgatgaa aacagtctct tggaagctaa ttggggtcct cgtttgaccg gcactttctt
     1861 tcgtcccctt ttaagccaac cagttttgtc cggacgagac aaaaacaact tgggctgctt
     1921 tagagaaacc cggcttggtg tagacaatag ctcccgggct tctgaaaggg gctgattgga
     1981 ttatgtggca aatgaaggtg gaaggatgac ttggaaggtg acaaatgaag tgggcggaga
     2041 tctgctgtga gttaatccag gctattagga gggacctttt gtcttccaga ggctggcagg
     2101 agcttttacc actgggtttt acatccttaa tgtaaaggac gcataattta tggtcagtga
     2161 aaacccaggc cccagtgaga tttgagtggg ctgtaaaatc gagcctagtg agtaattaca
     2221 gggagcattt atgtctccct ttgcagttgg caaagacctt tttgcaatca tcaattcatt
     2281 tgaacctcac aactccctgt ccggacccgg ggctggcctg agcctcctag gggaagaggc
     2341 cgtcaagtgg ccttcagatt ggggcgtctg aggcatctga cacggtcagg ggagaggcgt
     2401 cccctgccct ggcctctcct gtctcagacc tggccttccg gccagcagcg attccctccg
     2461 aattcctaac ttggctcggt cggcagctct gagcctccgg gcccctcctg ctctgctttc
     2521 tagccactct ctctttcctt tcgcagctaa gcttctcgaa aggcctgtct acacttgctg
     2581 tcttccttcc tcacctccag tttcctctcc aacccactgc ttcctgacct cttctactcc
     2641 gctcatcggc tgtcactaag gtaatgactt tcctggaggt taaccctgga caccctcatg
     2701 ggcacatgac gcgcagacac gcatccagtg tttcacattt tccagctcca gtcacttcta
     2761 tggacagaca cgcccctgta gacctcacag agtcacctgc tcctggcttt cctcctcctt
     2821 agtttctgct aggaactgga gtatccagac ctctcacctt ccggaatctg cctcttagca
     2881 tctcaccctg ggttggagtc taaaccacct agagctgagg ccttggggta ggtcagtttt
     2941 tccaagccac ctttttctca gttgcagtat agggtgtctt tacctggcag gtcaggtggg
     3001 cggtcttgca ggtaagattt taagtcccac tctttgaggg acttgaaata aattcaataa
     3061 agtgttcatg agaaaataca attgaggtca tcgtcagatt ttcttgtagg ttaagttccc
     3121 acagggagga ccaaagggag aagaaagagg tggggggagg gggcagtggg agagaaagaa
     3181 gcaaagaata gaaaagggca ccaaagacaa aaaaagtagg aaagggagac ttagaaaata
     3241 tgaaaaccca ccaaaacaaa caaacaaaca aacaaaaaac cacatccaga ggaaggagtt
     3301 tcttcttggg ttaggcaaaa agaaagtaaa caggaaaaag gtttaaaatt cattatccca
     3361 gtgacaaatc ccaggaagct ttcaaatcaa attgccccat tttgggtttt taactccttc
     3421 tatcaggttt aacctcttta cctcctccat cctggttaaa cgccccctcg gctggtgatt
     3481 aaatcccgaa gctacacgga gtctttcaat gaatgaatgg cccacagaaa gagacccccc
     3541 ctccccccag ctgtgttttt cagttttatt ccactttccg cccttttccg ttaatgaaca
     3601 cagggctaat ctcgggcctc gtcgaggaag aggctgcaga cgttaatgag gtagctgctg
     3661 gattccagta ttcgcccctt aaggaggcgg ctttgtctgg gaaggaaaaa cacgctgatt
     3721 atcataataa gtgctgcagg gccgcggccg cggggcacgg gctccgtggg tctgaagcca
     3781 cacttctaat tttggtgctg gagcccagga ttcattttgc ttcccattta agtctctgcc
     3841 tctgtcccag cttgcgatcc cttgagcggg gtggaaagtt gcgggcagct ttgggccaca
     3901 gatagggctg ctttgcagaa agttcctttg ttcgacccta catgcagacc agcaatgggc
     3961 cagggcgttt caggcctctg ggatccgttt tcccaaaagc agagagatgg gggtgcacgt
     4021 ttccaactct gcctcacacc agacttgttt ttaggactca ctggtgttga gcctttaagg
     4081 tcctcaaatg ctagaaaagc caaggcttag gcatagtccc cgtagaatga tcgcagggtc
     4141 agtgcccgtg gaacgctcct tccaggtcag gaaacggatg ggtattggta ccccagtccc
     4201 cccaccaagg gaagggcatg gttggggctc acatttggcc cccacatagg atgagaggga
     4261 tgagaggacc agcgatttgt caggaccact cagatccagc accagaacct gtagtcactc
     4321 cttttatccc ctaaatgtcc ccctcccata tgtcctgcac gcccccccgc cccccccccc
     4381 caaattctcc ctttctgtcc tgatccttag actcccagga gcccatgaat gtctttattt
     4441 ttaattgtta ttaccttttt ttttggccgc accctgcggc atgtgacatc ctagctcccc
     4501 gaccggggat cgaacccgcg ccccctgcat tggaagcgcg gagtcttaac cactggacca
     4561 ccagggaagt ctcccagtaa tctttttaga gcaagtgtgc ctgagttgga aacttgccct
     4621 tatgaatcct gagttttgga tgtttctcac cccaagacag atcaatcaag atgagatcac
     4681 tccaattaaa cttcaggctc tacccagacc ttcagccaaa tggcgggggg cggggggggg
     4741 acaactaagg gaaaagtgag gtgtttggtg caagaaaact tttagttgaa aacttcctta
     4801 acttacttgt tggctaaagg ttccctggca ttcatggatc agaatttgat actctttcca
     4861 agttaacaaa accaaccctc gtccagcccc ctaaatggaa atgttgaagg aggcccaggt
     4921 ggccagttgg ggcaactcca ctccttttgg tggcagtgac ccagatgttg cctggacttg
     4981 gggactggat gagggtgagc acctctgaga atagggatcc cacctacact cctccgtgca
     5041 cttttgggag agtaaaatga cagagcagtt cctggtgttt ctaaaagagg atttatttta
     5101 aataggaaaa aaaaaataac ccataggacc cttttcaccc tcacatacat actaattaaa
     5161 atacgtgtcc caaagtcatc aatattccag cacctgagaa cctggggagg gggtggaagg
     5221 cagtcgaatt caacttctgg ggacaccagc agaggggtct gtgctacttg ctcttgagtg
     5281 tatggcagcc tgttttaacc tgcatcctcg tttccgtggt cccccttctg tgcctggatg
     5341 gatgctgctc ccagctgcct atgcacacgg gacccctgtg ccccacgctt ccagcccaga
     5401 ggtcctgtca ggcttcctga gtgggccctg tgactcccag ggcccactgg tctcggcatc
     5461 ctccgttaag tgaatcccag aggctcagga gatcccctcg accccagttc ttctgatttt
     5521 ctgttttttc tgcttttatt gcccctttct cttctccatc tacccattct tctctacttc
     5581 atcaccattt cctcatctgg tcctctgggg gggtgtccta ggccagccac tcctcctttg
     5641 ggtgtcccag caccagcctg gcacaaagtg gggttcagta agagtatgtg gggtgtatgt
     5701 ttggacaggt gagtcaatga aggaacttga ctgccatact tgagctgcta ggcgggagtt
     5761 gttgaggatg caagaagttt taggtcaaaa gggtggaggg tggatgtcct tttactgaga
     5821 ggagtgggca ttgccccacc ccagccccat ttgagtgggg gcctcaccag tctcacccct
     5881 tcgttcactc atgcgtccat cccgtcatcc aacagttgat ccttactgag caagcccacg
     5941 gtccggcccc gggctgggca cctgccaccc tagcgcatcc cttgatggcc tctgcgtccc
     6001 cggggggtgg cgggccaggg ggttgcttct gcccagggtg gcctcgtggc tcccgggcgc
     6061 gggaggagcg gactcccgct ctgcaggcaa ggcaggtggg gtggggtgtg aggggcgggc
     6121 ctggtttggc cggctggccc ccttttagtt cacaccctgg gggggggcgg gggcgggcct
     6181 ggaacctgcc cttctctagg gctcgccgca ggtcccagcc agcccctccg gccctctcgg
     6241 cctcccaccc catcccctag ctgagtgctc gtggctgagc tggacccccg tacctgaagt
     6301 tcaggactga ggtggcggcg tacgggcagc tgtggtgtat gtccccttgg gctctggcca
     6361 cacaggtctc cctcttgagt tggggtccgt gagctggacc cctccctcca tgatgccttc
     6421 ctccccctgg ggctaagtcc agctcctttg cccccgactt gtgggctggg gcgtgtccaa
     6481 cgtcaagggc ccctggccgg gaacctccag ggagcactac aggccctgcc tctgcctagc
     6541 tgcccacctg ctctgctctc cctggcggct cctcccctgg ctcccccctc ccccttgcta
     6601 ggttgactgc ccacctgtgg ctccgctttc cccacctgac ccatttcccc ttctctgtgc
     6661 cccagtcact gggcttggga ccctctgggt ctcacccatc cagccctcta cctaacaggt
     6721 tggttttcct cgctgagccc acacctgtgg ttacctggcc ctgcctgctg ccccgcccac
     6781 ctcccacctg cttgcctttc gcctgcctct cccccagggc aaggaggccc tccccctcag
     6841 ggtcgcccaa gtttccggtt ggtctccagt gctcgtggca cccctcccct accatcctca
     6901 gaggcctcct cccatgggcc tggcctcccg ggctctgagt gcctgtgggc tgctgccaga
     6961 cctctgtcct gctcccttcc ccccacccca atccccccag actgcttgtc atcatgtcct
     7021 accgggcctg cctgtacggc cgtcctgtat ccacgagtca ggctctgcct tgcccccggc
     7081 ctcgtggccg gtctgggggc tgccacctgg cctgtcgctt ctgttcttgt gcttctcttc
     7141 ttgtaccttc tcctgtcatt ggcatcccta cgagccacct ccctccaccg aaaaccaggc
     7201 tgcaggtcag cccgtcctcg acaccctggc ggcgacagtc ggctgaagaa ctggacggaa
     7261 gaggcaggag agttgccctg gaccagcgct ccttcagaac ggtcacctgg catctcatgc
     7321 ccacctggtg ccccgtgact ccctcctggt ttgggctgaa gccgtctcga atcctccgtg
     7381 ggacaggacc gtggacacgc aaccccagta ccctccagct ccaaaatcgg cagactagga
     7441 tggaagtggc ctagctgggg ggcccttcaa agggccaagg agaaaacgcg ggccaagaga
     7501 ccagcctctc aaacgggctt cgagctgcag tgaccttcac ttaccttccc ccccttgaaa
     7561 tgtctggaaa acggaatgga cagattttct gtcttcaaag tttccggcta aacctcttca
     7621 agttctttat tgtttgggac tgagacactc agcaatggta atgggtagtt ccttttgtat
     7681 ttgccttgaa aggccaaaat atttttatat ggctacagac aaagccatct gttttaagat
     7741 gaactctatg tccgtcgttt cccaccgggg agatcgtgta taccgtgtgt gtctctgtgc
     7801 actcctgggt cttgaaacag gtttctcatg gggatggcca ttcacagggg tccacgggga
     7861 agcacctgcc ccaccaaggg ggcctgggga ctctgaccct catctgtgta ggatgtgacc
     7921 cccggggggg cggcgggtgt tctggctgca ctaacatgta ctctgcctgt gcctgcatcc
     7981 gccatgcata tgtgtcaagg actgtgggtt gtgtgcacct tggtgggaag aagctggaag
     8041 gtcaaatata ctgtgaatgt tctattgttc tggtcgggag gtcattttgc tgggttctgt
     8101 tacctggtcc aaataagtga atggatgaat aaacgaatga aggcgtgaaa gagtgaagaa
     8161 actaataaat aggtaaagaa gcgtaccctg aaggagatcc aatttgaggc acaggagctc
     8221 gatagataag tcaataaagc attgaatcag tatataaaca gggccaggca ggaaccgatg
     8281 tcaggtcatc gtggactaag ggaacacgta caattcaagt atgtagcgcc taaagtttgt
     8341 ccataaaaga ataaagccta gatgaaagaa tgaataagaa gtcgagaggc ataaaccagt
     8401 agtgagggtg agattatgcg gcccatcaaa gtgaaaagat gcaagagaaa gggcacggac
     8461 ggttgaaagg aagaagaaaa acggaaagac gcaaaataat aactaagcag gaagatcact
     8521 tttaaaatta gggggtgaga aaatatataa ggaggactat gtcaggttat taagagccaa
     8581 gcattaggat tagtccagat acatgctcca gccatagaaa aaaaagagaa acaacagagg
     8641 aagagttcaa aaggtagtta aaaccgaaaa aggacccagg ggaccagagg tgagagttaa
     8701 ctttaaccaa attttttcta actctgggca cacataaata aataaacact gaaaagaaag
     8761 aaagccaaaa aaagaaaaaa aaaggagaaa ggaaaggatg ggatgaataa gtagtggacg
     8821 tacgtggacc cagatgggag cgtggcagga ggggtttcga gtcatccagt cctgggacct
     8881 gaggtctgtt ccacgaaagg actaaaaaag agagagaaca aaataaagca tctaaataaa
     8941 aaccaagaaa tatggaagaa aaagtaacaa gtgttcagtc caggaataca ttagtgggtg
     9001 aataaataaa catataaaag aaggtggtgc taggagtcga ggtgcaggag actgtcatga
     9061 atcaaggttg gtccagttct aaaagccgca gtactatcag aacataataa gcatctccat
     9121 aaacaagtga atgagcatct aaagaaacaa agacacgatg aagtgaggca gggaggggcc
     9181 atggccacag gcactcctga ggggcctgtt ggaaggttgt aattaatctt cgccactgtc
     9241 tgggcaccaa agatccggga ggaggaaaga agacagacga gaaaggagga gatttggaaa
     9301 gctgcaacga aagagagaaa gaaagagtta agaggtggta aatgggtata ttcttggaag
     9361 agggttaggc taagagtggt aaaaaaggac cagccccaac tgtagatcac aatgggtcaa
     9421 aatctgggca ctcgttccgt tagtagagga gtgtatacct aataagaaga gaaacacagc
     9481 aggaaggaag aatggtatga aggaatgaag gaaggaagga aggaacgaga cgtggagagg
     9541 cagggcccca ggatgccgtt tgcaggtaac gttataggat tcatcacttc atggcacctg
     9601 agcgccgacg aatgaaagaa tgcaagaaag aaagagtgag agagcgaaag agagaaacag
     9661 tgaaaatggg agagaaatga taaatcagag actaaattag aaatgaaaaa ggaaaaaagg
     9721 agaaaggtaa tatattaaca gacagataga taaatacata tataggagag agcagctcta
     9781 ggagtaagaa tgagaggggg gcctgaacca agcacagtga cgaattcaca tctgggcttc
     9841 tgagatgggc cgccacctac ccaaccagga ggcagttcaa agctgaaatg cataagggag
     9901 gacctcagtg aggccaggga ggggaaggcc cactgcttgt agattatcat gtatccagtt
     9961 aggtgcccct gccagccaga agtgtagaaa caatcaccaa aaagaaagaa aacctgaatg
    10021 gatgcacaaa tgcgtgaatg caagagtgag tgagaaaaaa gatttgcagt gaccaaggag
    10081 gccggtcttg caggggtgtt aggattcatc cagtccctgg tgcctgatct ccaagagaag
    10141 gaaaggcggt aaaaaaagaa aggctgagag actggtagaa aaaaaatttg agattggaga
    10201 aaaaaataaa acaatttaaa aaaggagtaa agaaggtaat aaattagcaa gccatgcagt
    10261 gaagtctgtg agaagggact ggtttagcac agaccatcca cattaattca aatctccggc
    10321 cccgaagttg ataaacaata aaaacaatca cataaataaa tgcctgaagg gataaattca
    10381 cacgttccat gagaatgtga gaaaaagttt gaaaaattat aggagggact gggagaaaga
    10441 aagatgaaag aaaagaaaag aaaagagacc tatggaagaa gaggcacttc ctggataagt
    10501 acttacatat aataaacaaa tattattcat taaatacaat aattagtaag agctgaggtt
    10561 catcataaag aaagaataag tagaggcatg gctgtgtgaa caaatgaatg agaaggatga
    10621 ttttgattaa ttcacgtctg cacccgaggc tcacgggaat aaaagaatgc aaaaaagaga
    10681 gcggtgaagg aggggcgtag acaattatga caggatggat attagcaaca aaaacatatt
    10741 gaaggaataa atcaatacgt acataattct acgagagaga gggccatgtt agaacaaaaa
    10801 aacgagatgg caccgcgagc caggaattat gactgattca aaactgggct cttgagatag
    10861 ttaaataaag cctcaaccaa atcaccagta tgaggaatta acaaacaaaa gcgagcccca
    10921 catggaccgg tgctgagaag gctccaggaa ccacagatta tggttaatcc aattctgtgc
    10981 acctgaggtc cataaataaa agaataaata ttgaaataaa agagtgacag aaagaatgaa
    11041 tggacccatg aacaactgaa ttagaaatgg aaatgcctgg aacggccagg agtgcgttgc
    11101 ccatgggatt gtcactcatc tcactccgga cacctgaggt tcctaagagt gaaaagatgc
    11161 aagaaaaaaa acaacaaaaa aacccatcag ggagtcaaag aaagaggtga gggaaggcaa
    11221 agtgaaacaa agtgaaagag aaaggcgggg tgggggaggg actaataaaa agctaacgaa
    11281 gatatgggtg tgtctgagag gaggatgtgt taggattagg gatgaggtca tcatcaatcc
    11341 taatgatgga tgagatcatc caatccccct ttttagggca agggaggatg gagagatgaa
    11401 aaaaaaaaga agtgaaaaaa ggagaaagga aggatgataa acctccaacc aaggtgataa
    11461 atggttagtt aaaagagagg ttgtctgagc agggattata attagtttac atacgtactc
    11521 cttaaataga taaatacatc acacctttcc aagaataaat gaaaaataga ggaaataccc
    11581 gacccaaaga caaggctgca tcttccaacc ttttatcatc tttatgtaat aaaatatatg
    11641 caattgaggt ccataaataa aagaataaat agcaaagtgt aaaaggtgac taaaggcgag
    11701 gaagaaagat agcaaaggca aataaacaca tgggccaacg atggttattt tgcacatgca
    11761 gttttgacta atacagttat ttcccaggag actggtaagt aaaagaatac ccaaaataag
    11821 aaagaaagga agggcaaatg cacgagtgca taagtgaatg aatgaatgag tgagaggtgg
    11881 tgctgcctgg accagggaca ggaggatgtc gctcgcggga gcctgattta tccttctgtg
    11941 cacctgagtt tgtaagaatg aaggaacgga aggaagagtg agagaaaggg agaaatacaa
    12001 aagaaaggaa taaggaatca aaataatgta taaacgaata aataggagaa gggagagctt
    12061 catgaacgag gggctgtgat taatcgaaag tcgtgctgtt gaagtcggta aataaaggcg
    12121 tcaaatctaa atgaatgaac gaatgagtga ctggaagaaa tggacgaatg actggaagga
    12181 agtgagggag gaaggaagga aggagggaag gagggaaaga aggaaaaagg aaggaagaaa
    12241 tagtaggcag agagggaggg aggactcttc cagtttgggg tccctgggtt cccgccagcc
    12301 gaagggagtg ggtaccaggg aggcgtggct cttggcatgt tgtgtgcttg ttacctgcac
    12361 tttcttggcg ggaggagctg gctcaggagg acccttgcct tggagcgcca ctgtcacacc
    12421 ctggctgtgg gggccatttc acttcattgc tctcattctc agtttcccca tctgtaaact
    12481 cggaatggca tcagctcccc gcttggacgg atcgtggggc agatgctgtc ctgcgtgttg
    12541 gcagtgcccc gtcggaaggg ctcaggcccc gggccctgcc gaaggttgtg ggaactggac
    12601 gtgggtcacc tgcgagggag gcttttcccg ccagggggca gcagagggtc agggagcagg
    12661 agaccctggg ggctgtgtgg gccccgccgg ctgcgctgtc ctgggagggg cgccactcac
    12721 atccagggcc tgtgcaggtg gcttgggaag ggggccagta ggggccagat caccagaaat
    12781 cgtgttcccg caactttccg aaatgtgccc gggagcccac cagcccggtc ttctacgggg
    12841 taggctgcct tcccttctcg agtcaggggg tcccggggca ggtgcctctc agcccggggt
    12901 ttgcagaagt ggtcccagga tcccggcccc cttgccttgg catccccaga gccggtttca
    12961 aggccttgct gtcttctcga ctgttttccg atgtactctc tgtatttcgg cggaaagcgc
    13021 gtttgcactg tgtgttgttg aacttgtcct ctcccctcct gacctgcctt cccccgcccc
    13081 ccccgccccc cccgccgggg ttgggggctg tttgtactgg cgcttccgac cccagggacg
    13141 ccctggttct gtgcagtctc ctttctctgt accggacagg atttgtgcac ttgtgtgttg
    13201 tgtgcctgtg tttgtctcta aaaatgagga ccagaggccc tctggacttc tcgattccta
    13261 tttgggacat taaaaaaaaa aactggattc ctaacaagcg ccctgaacag gaggagccag
    13321 cttggctgga cccaggatcc gtggctggga gagcggggag cgcagtgggg gtcgggtgcg
    13381 gctggggcta gcgttttgcc tggtgggtgg gaggtgccat gtgtctgggc cacgtgagca
    13441 gggcctcgtg ggcctgaggt ggtgctgggg cttcagggct ctgcacgctt attaaccctg
    13501 aagacacctg ctcagagagg gtctccagag agccccccaa acagcccagg tgtcattgtg
    13561 tggaccagag tgggggtggc agggacttgg cgcaggaaga gcctgggagg gtctttttgg
    13621 agaacgcttg tgtggcttta aaagtcagct gagggtcgag aagacttaga aagtattggg
    13681 gagaagttgg gggccacggc catgtgcaca gaggaaatag ggagggacag gagagcaaac
    13741 ctctcgggga gccttctccc caggtccaaa gggctgtcga gggggtcacg tggatggaaa
    13801 tgggctgatg ggagaatgcc ccagggggga gggtgggttg ggattggatg agttctgtct
    13861 gtttaggaat attgagggcc tgagggtcat cgggtcagag ctcttaagag cttgggatcc
    13921 agcattctaa gggtctccag ttctgagatg ctgagtttca ggacagggct tgagggctgt
    13981 agaagccggg ggtggaattt ccacatgggc ccccatctgg ttctgtccac gctcgatcca
    14041 tgaggtccaa gatgggatct cagcactcct ctctgatcag ggcttatctc aagtgtgtgt
    14101 ttcttcttct cactctttga aaaaaagaca aattttgtct gttgactttg acctttgcat
    14161 gcaccccttg cacaaatcct tcccctggtg acaccaggag ctacaagtct ccttggattt
    14221 ctgtacaact cccaactccc tcctcaggaa gcttggcctc ggggctggcc ttccagaggg
    14281 tggaggacgg aggctgggcc tctggggcag atgggccaag ggctcccctg tgatcctaat
    14341 gtaaacggtg tggatagcac atgacctaga gcaggagatc acccatcatt cgacatgtca
    14401 cccgttttta tttcttccct tccgattcct gtttacgagc acactttttt taatggacat
    14461 ctgatttttt aaatgagcgt tcatttttta aacctaattg ccattcttca ccacatacac
    14521 ttcttttttt tttacatctt gccttttcca cttaatattc catcgtcaac atttttcttc
    14581 cttccataga cttcgtcaca tcactggctg ccttgtgtct cattgagagg ctatgtcaat
    14641 cattcacatc aacctgctat tgttactatt gctaggcata attcatcttt tttttttaat
    14701 gttacagatt atgccacagc taatggctta gcacacccac tttttttttt tcattcttac
    14761 caattatctt cccacaccta gaaatgatca tggtatgtca gtttcatggt atgtcagttt
    14821 ctcctgctag gctgtgagcc ccttaagggc aagaagcttg ttgaattgat ctttgtatct
    14881 ctaatgcctg aaatgttgta gatgctaaat gttagatgcg aggatggaag gatggatgaa
    14941 gatgtgagtg agtgagtggt tggttggctg ttagaggaga ggagggaagg atgggtgaat
    15001 aaaaggattg gtgaatgaac aaatgaactt cttagggttg agtctgttga atgaaaggcc
    15061 gggaattttt gtatggatat tgactaatag cggaaggctt acagcatttt ataacgtcca
    15121 gcgatgtatt agcattttgt tatgatattg ctagtttatc tctgttaaaa agtgttttct
    15181 gtcattttaa cttgcattgc tttgattact aatgacggtt gaacattttc acgtgtgttt
    15241 gttaaaaatt tgcattttat cttctgtgaa ctgtttgtcc aagtccaccg ggtcatggct
    15301 ttgtgatgag actgtcaagg atggaacgag tgtcctcagg acgtagtgag cccttcctca
    15361 ctggaggcat tcaaggggca ggccaggcag atacccgatg agggtggctt taaggagatt
    15421 caattagtgg gagtggggtt ggcctagatg acccttcatt tgactttagg attttgcttc
    15481 ttcctgggaa atgggcatat tccctctgtc agcccagcag tatctaaggc cacgtccccc
    15541 tggtgggctt gtgcattagt ggtttatgaa ctccaacctc atcctctata actcttgtgg
    15601 ggcaggaata tctctttgac cctccaggct ccagagagct gtgctaccgt cttgtagagt
    15661 tcagtggtgg acttcccacc cgcccccctc ccccatttca cctcgaggag gacaggcccc
    15721 tgcacctcca cttgccacct ctcagcgcaa tcagctgagg cgatcagctg ccgtttacgt
    15781 tcccggggtc ctgtgagcag atgtccccta ggcctgcgtg ttggtctttg gggtttaatt
    15841 gattaagggg acatgtcgga tcaggtctga taatgaatcc tccttcagaa atgggacagt
    15901 tcaattccgt gagctgagga gcagaaggga ccccatgttc tcctcgggct tcccctcacg
    15961 gcccacccca aggctagccg gggctcaaag gtcaccgtgg ccattcgggg agggcgcgtg
    16021 acccaaggag ggcttgcccc tgcgttccag aacacgctct gctctcagct aagggccgca
    16081 tcttcccgcc gaccctctaa tatagcaccg agtgctgttt gcctgtattg gaattcctca
    16141 cccacgtgtt tgccccagca tcgaagctcg ggaggccagt gatgcttccc gacatgattt
    16201 cgatccatcc atccatccat gcatttggcc tacgtctcct gacctggcgc tttggtcttt
    16261 ccctttcctg aaagcaaacc ttttcctctt gggcaggctg tgtagtgcca tgggctgtgg
    16321 ttatgaagtg aacgccctta tttgtggctt ctccctccgg ggtcactgct ctgagcacgt
    16381 cccagctgga tgtcatctgc caccgtcacc cacacggctt ccttccccgt ggcgctttcc
    16441 catgcatcac acaccgtgag ggaaccaagg ccggggtccg agagcggccc ccctcccccg
    16501 cccgtgagcg gagatgtccc cccacctagg ccaccctgcc tggtgcatgg tccctgtcat
    16561 gagctttgcc ctcagcctcc tcccaccaga tggcagtggt tgtaactcat cccttcattc
    16621 tttcgttcac tcagtccaca aacgtttgaa aagatccgcc ggtgctatac tagagctggc
    16681 tcacaggaca cgttccaacc atcccctttc caaggaaaag atgagcatgt ttgccagggg
    16741 ccatgtttgt gtgtcagtaa caaggcgggg ccattgattt agctcccacc cctagacccg
    16801 agttctgttg aaagtttggt agccctctcc aactttgttc ctccccaaac tgttgattag
    16861 taaccggcaa actgtgtttc ttggtgctca gaaatcatag cctgtagcct ccagaggcca
    16921 gaatgagagc tggggggtct gaaacgaaag gctgattctg cccgtgagca ggctttcaag
    16981 tcattagaac accctgatct cgcacaaagg ggaccttaga gtcattcctg tccctttgag
    17041 atttgctaat tctgggctct atttagagaa aattggggaa ggtgattgct tgcttggatg
    17101 gcaaggatcg tgccccatgc ggggtctgca cagaacaatc tttccgaggc acacagcgct
    17161 tggcgaaccc tggatgcagc ccccagcatc catgcaggtc ccaggccagg cggcatccac
    17221 cccacccccg cccccgcccc cccgccaact ccaacttagc tcactgctac ctgcttggga
    17281 caaggcgtag atctaggggc tctactgaga attctgtatt tgctttatcg ccttggacag
    17341 tgggggtggt ggacaaagcc aggaccctgg agctggacaa acgtgcggtt taaacagatg
    17401 gcgacagctt gagtctgtct cctggtgata ccatggcaca cccacctcgc agggctgttg
    17461 tgaggcttga tgtaactagg atcttgaact gcgattctga aagggtgtgc gcgtgccccc
    17521 aggggtgggt tgggggtggg ttgacaggcc aggaggggca gcctgattcg ggcaggttag
    17581 tgggaaatct ttttgtcaaa catgcagtgg gtattgtggg aacgaacgct aaatttgtat
    17641 ggcgttcgaa ggttagatgg ttgtaatttg ggcaggaacc ttcatgctgg gtactgacga
    17701 cccctttggg caatgccctg gaccccctgg ggtacgcgtt cacacctgtc tccggaatcg
    17761 gaatcggttg gaaggcccca tctgtgtctt gcctaccgct gtgtctggcc tgtgggcggc
    17821 acttatcctc cacgagagac ccctcccagc agtgtcctcc ccccaaaata ttaggcacca
    17881 gctgtcaaag acactatacc tctccccact aatgtcccct caccccattc acaacatttg
    17941 ggctcacatg tcagcagcct gggtgcctaa cacagtacca ggccagtggt aggggtcacc
    18001 ttccatttct gttgaaagga tgggtaggta gatggtcaaa taacaaaatt gtaacccaat
    18061 gcaagcgacg gttgtttata acctttacta agagattgta ttttgttcct aattaacctg
    18121 ttaacagttg ttgtatctca cggacttttg tatgatgtgt gttgtttgaa aaccaggact
    18181 cttgcctctg gtgtcactcg atggaacttt cgctgtgcga ttaacgagtc agtgttttgt
    18241 gttagaaatg agaatctggg gggcgcttaa ctaactgtgt ggtgttgggc aagtcactcc
    18301 tccttcctct ctgaccctcg gtctcctttt ctctaagccg tgggtcacca gaaagcttac
    18361 tacctcacag ggttgttgtg agggcccagg gctgctaatg aaatgctggc tgtcactgag
    18421 aatggtcgcg tgttgggggc tgtctggaag ggaacaggga agcctttcct agttccaagt
    18481 gaataaaaag tcagccttga tcttatgcta agattggatt tccaccagtc agtgggatgt
    18541 gtaaggcaga ggcccagcag tttgctggcg tgtagcgatg tgggcccagg gtaaatattg
    18601 gtttggttca tgagtgatgg ctctttccct tcctcggagc ctgccttcct ctcccctcgc
    18661 atcctgagct gcttcttgtc gcgtgcaggg tgactgctct gggtttgccc tacctgtcgc
    18721 tgcctggtcc gtggaggggc ttctgcagac atctgtgggt gccccggggt gtttcttagg
    18781 gaggaaggcg gggggacagt ttcgagagag cccgagcagg ttcctgggta acatctttag
    18841 ggactaaaac actttcttct gccttttaag ggagaggccc gtgctcctaa tttcctccac
    18901 ccccttcctt ctttccctga ctgtaaggta aataaatgag tcttcagccc cctccatggg
    18961 cctggaacca aacttggggc tgttccacgc ccacgagctc cctgcttgat tggcgtgtgg
    19021 gcccatttta cagataagca agttgagaat tggggaccgc ggagcgtcag agccaggact
    19081 gaacagtctt ccatgaaaag ccgtggggca ctctttccac ttggccagac aagccctccc
    19141 ggttaccgtg gccagcctct gtcagcccaa atgtgcccca gtgtgtctct gtccccatca
    19201 cgtgcctggc agtgctcccg tggaggtcac gctctccaga gctctgccct gctctggagg
    19261 aagtcccagg aggcacccct gcaggggtca ttttggatcg ggggtctcca cgtgaccacg
    19321 gaattccttt cctggccctt gtctcacgtg tgtgggacat cagtgttctg ctagaacatc
    19381 ccagattcca tcccaggtgg gcttgagctg gggatcttgt tgagtccctc cctcccggcc
    19441 cctccctctg tggaagcctc accaccctcc tggtttggcc tctgcctttc acagctgcag
    19501 tgggctctgt ctgcaccacg gccaccccat gtccttgaga acttgtccga agctcccgag
    19561 gggcgggccc cactgtaggg acaggttggt agggtcctcc tctcagtaga ctgtgggcct
    19621 gtgtgtaggt gtctgctccc tgatggacct cggtcctgtg tgacccaggg ggagggactt
    19681 tctcaggtgc ctggtgtttt cagggccttg tcctcttgag gggggcaggc ctgggtccct
    19741 gcctctggag ggcaggtagg gagtcgaagc tcagtgaggt cgtgtctaag cagctcttag
    19801 accccctccc tgaccctgag acctacgctt ctctgaccct acaccccctc cctgaccctg
    19861 agacctatgc ttctctgacc ctacctaaca gccctgctgt ctgcactagt aggtgcctaa
    19921 taggcgctcg ctgactggta aggcagggtt ttagtggatg tgaaaagccg aattgactgt
    19981 tggctgatgt acacgttgaa tctgcatgcg tttctgtaag agaaaaaggt gtgttttctt
    20041 ggcaaagact cttcagggca aagcctgagg gtcttttgtc tgagccgggg gctcacccca
    20101 gggggcggcc gccggacaga ccatcctgat ggaaatagct gtcttctgaa cattgttgga
    20161 aatatttatg tctagaataa aactttattt gggctaaaat gtactcctat gtgtagtggt
    20221 ccaagtgatt ttttttatta agtacagtcg atttacaatg ttgtgttcat ttcttctgta
    20281 cagcaaagtg actcacgtgt acatatatat gttctttttc atattctttt ccattatggt
    20341 ttatcacagg ctattgacca tagttccctg tgctgtacag tgggtggtcc aagtgatttt
    20401 gatgacgtgg cattcggcaa ttcccaagtg ggaggtgtcc tggccccgcc catgccctct
    20461 ctgggcctcg ggagccctcg ccttggggag gggaggtctt ttacctgaaa agtctttgtc
    20521 tgtcctcacc attggtgaca atcagcatta acctgtaagg cacatgccca gtctgggatg
    20581 cagccctggt cagccagcag atgagggggg gatcggaccc cagaccttga ttcctttctc
    20641 ctcctctcgc cctcctctcc accccctcaa gctgaggggc ggacacttac ccatttgagt
    20701 tctggttctg gcatcaccat ttgccagctt agtggccttg ggagggttac ttggaccacc
    20761 ccgagccttg gttttcaccc ctgtagaatg ggtacatagt gacagtgtcc gctctggggt
    20821 tgctggctca gtgccttgct gcactccata tatactggct ctgagatcaa ggtctggggc
    20881 tcgaagccac ctaagcacct ttatgtgtgt gtggcctgga tgagtttgct cacctgtaat
    20941 ccggaaatag tcacatctac ctggcgtggt tactgtcgga ttcaatgaga ttgttcacgt
    21001 gaaaataaat gcttcgttac ccggcctccc agttggggct ggccacagca ccctgcagcc
    21061 tgtgggtcct ggtcgcggaa gccctgggct ttctggaact gccaaaaggg ggctgcaggg
    21121 tggagtggag ggcgtcaggg gagcacccgg ccagctttgg agggcagcga gggaaggaag
    21181 ggtttgcttt tcagtacaga gatggagcag cttcagaggg gacgggattg aggtccaagt
    21241 gggcaggatc agggagaagt tttagaaaga ggaggaagct gatagtttag aaaacaccca
    21301 agtttaattg gcaatgggtt ggacaggaga gctggggtgg gttttagcaa ggccaagcat
    21361 cctagatttg ggttagtgag tggaggacca tcagaggttc ctggtgcagg ggggtgtgat
    21421 gcttctggaa ctctctccgg gagggggaga ccaggtgtgg ggtgccagag ctgaggggcg
    21481 gcaggtagag ggcaggggct agtggctggg tgctcacctc gcccccatgg ctgctggggg
    21541 ccagggccct ctccccgtgt ggtccaggcc cctgagcgac ccgtctccta accctctctc
    21601 tgctccttgc ctccaacgtg cctgtgtgca tgagaactcg tgtccgccag tgagcccagg
    21661 agcgggtggc cttcatcagc acctgtgtct ctctcagcct ccacagccac ggggatacct
    21721 gcacgcgttc ccgtgggaca ggccggaccc aaagactctg gacccgggcc actcccctgc
    21781 atggacgggc gcgtccaccc cgcctccccg ccctctgact gatggacttc actgatctga
    21841 gtgtcagaca cgcgggctgg acccctcccc acccctcacg aaccctgaga
//
LOCUS       XM_032620267           20271 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X3, mRNA.
ACCESSION   XM_032620267
VERSION     XM_032620267.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20271
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..20271
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 135 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     CDS             10512..11654
                     /gene="LOC116747726"
                     /codon_start=1
                     /product="uncharacterized protein LOC116747726"
                     /protein_id="XP_032476158.1"
                     /db_xref="GeneID:116747726"
                     /translation="MNERMSDWKKWTNDWKEVREEGRKEGRRERRKKEGRNSRQRGRE
                     DSSSLGSLGSRQPKGVGTREAWLLACCVLVTCTFLAGGAGSGGPLPWSATVTPWLWGP
                     FHFIALILSFPICKLGMASAPRLDGSWGRCCPACWQCPVGRAQAPGPAEGCGNWTWVT
                     CEGGFSRQGAAEGQGAGDPGGCVGPAGCAVLGGAPLTSRACAGGLGRGPVGARSPEIV
                     FPQLSEMCPGAHQPGLLRGRLPSLLESGGPGAGASQPGVCRSGPRIPAPLPWHPQSRF
                     QGLAVFSTVFRCTLCISAESAFALCVVELVLSPPDLPSPAPPAPPAGVGGCLYWRFRP
                     QGRPGSVQSPFSVPDRICALVCCVPVFVSKNEDQRPSGLLDSYLGH"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccagcta agcttctcga aaggcctgtc tacacttgct
      961 gtcttccttc ctcacctcca gtttcctctc caacccactg cttcctgacc tcttctactc
     1021 cgctcatcgg ctgtcactaa ggtaatgact ttcctggagg ttaaccctgg acaccctcat
     1081 gggcacatga cgcgcagaca cgcatccagt gtttcacatt ttccagctcc agtcacttct
     1141 atggacagac acgcccctgt agacctcaca gagtcacctg ctcctggctt tcctcctcct
     1201 tagtttctgc taggaactgg agtatccaga cctctcacct tccggaatct gcctcttagc
     1261 atctcaccct gggttggagt ctaaaccacc tagagctgag gccttggggt aggtcagttt
     1321 ttccaagcca cctttttctc agttgcagta tagggtgtct ttacctggca ggtcaggtgg
     1381 gcggtcttgc aggtaagatt ttaagtccca ctctttgagg gacttgaaat aaattcaata
     1441 aagtgttcat gagaaaatac aattgaggtc atcgtcagat tttcttgtag gttaagttcc
     1501 cacagggagg accaaaggga gaagaaagag gtggggggag ggggcagtgg gagagaaaga
     1561 agcaaagaat agaaaagggc accaaagaca aaaaaagtag gaaagggaga cttagaaaat
     1621 atgaaaaccc accaaaacaa acaaacaaac aaacaaaaaa ccacatccag aggaaggagt
     1681 ttcttcttgg gttaggcaaa aagaaagtaa acaggaaaaa ggtttaaaat tcattatccc
     1741 agtgacaaat cccaggaagc tttcaaatca aattgcccca ttttgggttt ttaactcctt
     1801 ctatcaggtt taacctcttt acctcctcca tcctggttaa acgccccctc ggctggtgat
     1861 taaatcccga agctacacgg agtctttcaa tgaatgaatg gcccacagaa agagaccccc
     1921 cctcccccca gctgtgtttt tcagttttat tccactttcc gcccttttcc gttaatgaac
     1981 acagggctaa tctcgggcct cgtcgaggaa gaggctgcag acgttaatga ggtagctgct
     2041 ggattccagt attcgcccct taaggaggcg gctttgtctg ggaaggaaaa acacgctgat
     2101 tatcataata agtgctgcag ggccgcggcc gcggggcacg ggctccgtgg gtctgaagcc
     2161 acacttctaa ttttggtgct ggagcccagg attcattttg cttcccattt aagtctctgc
     2221 ctctgtccca gcttgcgatc ccttgagcgg ggtggaaagt tgcgggcagc tttgggccac
     2281 agatagggct gctttgcaga aagttccttt gttcgaccct acatgcagac cagcaatggg
     2341 ccagggcgtt tcaggcctct gggatccgtt ttcccaaaag cagagagatg ggggtgcacg
     2401 tttccaactc tgcctcacac cagacttgtt tttaggactc actggtgttg agcctttaag
     2461 gtcctcaaat gctagaaaag ccaaggctta ggcatagtcc ccgtagaatg atcgcagggt
     2521 cagtgcccgt ggaacgctcc ttccaggtca ggaaacggat gggtattggt accccagtcc
     2581 ccccaccaag ggaagggcat ggttggggct cacatttggc ccccacatag gatgagaggg
     2641 atgagaggac cagcgatttg tcaggaccac tcagatccag caccagaacc tgtagtcact
     2701 ccttttatcc cctaaatgtc cccctcccat atgtcctgca cgcccccccg cccccccccc
     2761 ccaaattctc cctttctgtc ctgatcctta gactcccagg agcccatgaa tgtctttatt
     2821 tttaattgtt attacctttt tttttggccg caccctgcgg catgtgacat cctagctccc
     2881 cgaccgggga tcgaacccgc gccccctgca ttggaagcgc ggagtcttaa ccactggacc
     2941 accagggaag tctcccagta atctttttag agcaagtgtg cctgagttgg aaacttgccc
     3001 ttatgaatcc tgagttttgg atgtttctca ccccaagaca gatcaatcaa gatgagatca
     3061 ctccaattaa acttcaggct ctacccagac cttcagccaa atggcggggg gcgggggggg
     3121 gacaactaag ggaaaagtga ggtgtttggt gcaagaaaac ttttagttga aaacttcctt
     3181 aacttacttg ttggctaaag gttccctggc attcatggat cagaatttga tactctttcc
     3241 aagttaacaa aaccaaccct cgtccagccc cctaaatgga aatgttgaag gaggcccagg
     3301 tggccagttg gggcaactcc actccttttg gtggcagtga cccagatgtt gcctggactt
     3361 ggggactgga tgagggtgag cacctctgag aatagggatc ccacctacac tcctccgtgc
     3421 acttttggga gagtaaaatg acagagcagt tcctggtgtt tctaaaagag gatttatttt
     3481 aaataggaaa aaaaaaataa cccataggac ccttttcacc ctcacataca tactaattaa
     3541 aatacgtgtc ccaaagtcat caatattcca gcacctgaga acctggggag ggggtggaag
     3601 gcagtcgaat tcaacttctg gggacaccag cagaggggtc tgtgctactt gctcttgagt
     3661 gtatggcagc ctgttttaac ctgcatcctc gtttccgtgg tcccccttct gtgcctggat
     3721 ggatgctgct cccagctgcc tatgcacacg ggacccctgt gccccacgct tccagcccag
     3781 aggtcctgtc aggcttcctg agtgggccct gtgactccca gggcccactg gtctcggcat
     3841 cctccgttaa gtgaatccca gaggctcagg agatcccctc gaccccagtt cttctgattt
     3901 tctgtttttt ctgcttttat tgcccctttc tcttctccat ctacccattc ttctctactt
     3961 catcaccatt tcctcatctg gtcctctggg ggggtgtcct aggccagcca ctcctccttt
     4021 gggtgtccca gcaccagcct ggcacaaagt ggggttcagt aagagtatgt ggggtgtatg
     4081 tttggacagg tgagtcaatg aaggaacttg actgccatac ttgagctgct aggcgggagt
     4141 tgttgaggat gcaagaagtt ttaggtcaaa agggtggagg gtggatgtcc ttttactgag
     4201 aggagtgggc attgccccac cccagcccca tttgagtggg ggcctcacca gtctcacccc
     4261 ttcgttcact catgcgtcca tcccgtcatc caacagttga tccttactga gcaagcccac
     4321 ggtccggccc cgggctgggc acctgccacc ctagcgcatc ccttgatggc ctctgcgtcc
     4381 ccggggggtg gcgggccagg gggttgcttc tgcccagggt ggcctcgtgg ctcccgggcg
     4441 cgggaggagc ggactcccgc tctgcaggca aggcaggtgg ggtggggtgt gaggggcggg
     4501 cctggtttgg ccggctggcc cccttttagt tcacaccctg ggggggggcg ggggcgggcc
     4561 tggaacctgc ccttctctag ggctcgccgc aggtcccagc cagcccctcc ggccctctcg
     4621 gcctcccacc ccatccccta gctgagtgct cgtggctgag ctggaccccc gtacctgaag
     4681 ttcaggactg aggtggcggc gtacgggcag ctgtggtgta tgtccccttg ggctctggcc
     4741 acacaggtct ccctcttgag ttggggtccg tgagctggac ccctccctcc atgatgcctt
     4801 cctccccctg gggctaagtc cagctccttt gcccccgact tgtgggctgg ggcgtgtcca
     4861 acgtcaaggg cccctggccg ggaacctcca gggagcacta caggccctgc ctctgcctag
     4921 ctgcccacct gctctgctct ccctggcggc tcctcccctg gctcccccct cccccttgct
     4981 aggttgactg cccacctgtg gctccgcttt ccccacctga cccatttccc cttctctgtg
     5041 ccccagtcac tgggcttggg accctctggg tctcacccat ccagccctct acctaacagg
     5101 ttggttttcc tcgctgagcc cacacctgtg gttacctggc cctgcctgct gccccgccca
     5161 cctcccacct gcttgccttt cgcctgcctc tcccccaggg caaggaggcc ctccccctca
     5221 gggtcgccca agtttccggt tggtctccag tgctcgtggc acccctcccc taccatcctc
     5281 agaggcctcc tcccatgggc ctggcctccc gggctctgag tgcctgtggg ctgctgccag
     5341 acctctgtcc tgctcccttc cccccacccc aatcccccca gactgcttgt catcatgtcc
     5401 taccgggcct gcctgtacgg ccgtcctgta tccacgagtc aggctctgcc ttgcccccgg
     5461 cctcgtggcc ggtctggggg ctgccacctg gcctgtcgct tctgttcttg tgcttctctt
     5521 cttgtacctt ctcctgtcat tggcatccct acgagccacc tccctccacc gaaaaccagg
     5581 ctgcaggtca gcccgtcctc gacaccctgg cggcgacagt cggctgaaga actggacgga
     5641 agaggcagga gagttgccct ggaccagcgc tccttcagaa cggtcacctg gcatctcatg
     5701 cccacctggt gccccgtgac tccctcctgg tttgggctga agccgtctcg aatcctccgt
     5761 gggacaggac cgtggacacg caaccccagt accctccagc tccaaaatcg gcagactagg
     5821 atggaagtgg cctagctggg gggcccttca aagggccaag gagaaaacgc gggccaagag
     5881 accagcctct caaacgggct tcgagctgca gtgaccttca cttaccttcc cccccttgaa
     5941 atgtctggaa aacggaatgg acagattttc tgtcttcaaa gtttccggct aaacctcttc
     6001 aagttcttta ttgtttggga ctgagacact cagcaatggt aatgggtagt tccttttgta
     6061 tttgccttga aaggccaaaa tatttttata tggctacaga caaagccatc tgttttaaga
     6121 tgaactctat gtccgtcgtt tcccaccggg gagatcgtgt ataccgtgtg tgtctctgtg
     6181 cactcctggg tcttgaaaca ggtttctcat ggggatggcc attcacaggg gtccacgggg
     6241 aagcacctgc cccaccaagg gggcctgggg actctgaccc tcatctgtgt aggatgtgac
     6301 ccccgggggg gcggcgggtg ttctggctgc actaacatgt actctgcctg tgcctgcatc
     6361 cgccatgcat atgtgtcaag gactgtgggt tgtgtgcacc ttggtgggaa gaagctggaa
     6421 ggtcaaatat actgtgaatg ttctattgtt ctggtcggga ggtcattttg ctgggttctg
     6481 ttacctggtc caaataagtg aatggatgaa taaacgaatg aaggcgtgaa agagtgaaga
     6541 aactaataaa taggtaaaga agcgtaccct gaaggagatc caatttgagg cacaggagct
     6601 cgatagataa gtcaataaag cattgaatca gtatataaac agggccaggc aggaaccgat
     6661 gtcaggtcat cgtggactaa gggaacacgt acaattcaag tatgtagcgc ctaaagtttg
     6721 tccataaaag aataaagcct agatgaaaga atgaataaga agtcgagagg cataaaccag
     6781 tagtgagggt gagattatgc ggcccatcaa agtgaaaaga tgcaagagaa agggcacgga
     6841 cggttgaaag gaagaagaaa aacggaaaga cgcaaaataa taactaagca ggaagatcac
     6901 ttttaaaatt agggggtgag aaaatatata aggaggacta tgtcaggtta ttaagagcca
     6961 agcattagga ttagtccaga tacatgctcc agccatagaa aaaaaagaga aacaacagag
     7021 gaagagttca aaaggtagtt aaaaccgaaa aaggacccag gggaccagag gtgagagtta
     7081 actttaacca aattttttct aactctgggc acacataaat aaataaacac tgaaaagaaa
     7141 gaaagccaaa aaaagaaaaa aaaaggagaa aggaaaggat gggatgaata agtagtggac
     7201 gtacgtggac ccagatggga gcgtggcagg aggggtttcg agtcatccag tcctgggacc
     7261 tgaggtctgt tccacgaaag gactaaaaaa gagagagaac aaaataaagc atctaaataa
     7321 aaaccaagaa atatggaaga aaaagtaaca agtgttcagt ccaggaatac attagtgggt
     7381 gaataaataa acatataaaa gaaggtggtg ctaggagtcg aggtgcagga gactgtcatg
     7441 aatcaaggtt ggtccagttc taaaagccgc agtactatca gaacataata agcatctcca
     7501 taaacaagtg aatgagcatc taaagaaaca aagacacgat gaagtgaggc agggaggggc
     7561 catggccaca ggcactcctg aggggcctgt tggaaggttg taattaatct tcgccactgt
     7621 ctgggcacca aagatccggg aggaggaaag aagacagacg agaaaggagg agatttggaa
     7681 agctgcaacg aaagagagaa agaaagagtt aagaggtggt aaatgggtat attcttggaa
     7741 gagggttagg ctaagagtgg taaaaaagga ccagccccaa ctgtagatca caatgggtca
     7801 aaatctgggc actcgttccg ttagtagagg agtgtatacc taataagaag agaaacacag
     7861 caggaaggaa gaatggtatg aaggaatgaa ggaaggaagg aaggaacgag acgtggagag
     7921 gcagggcccc aggatgccgt ttgcaggtaa cgttatagga ttcatcactt catggcacct
     7981 gagcgccgac gaatgaaaga atgcaagaaa gaaagagtga gagagcgaaa gagagaaaca
     8041 gtgaaaatgg gagagaaatg ataaatcaga gactaaatta gaaatgaaaa aggaaaaaag
     8101 gagaaaggta atatattaac agacagatag ataaatacat atataggaga gagcagctct
     8161 aggagtaaga atgagagggg ggcctgaacc aagcacagtg acgaattcac atctgggctt
     8221 ctgagatggg ccgccaccta cccaaccagg aggcagttca aagctgaaat gcataaggga
     8281 ggacctcagt gaggccaggg aggggaaggc ccactgcttg tagattatca tgtatccagt
     8341 taggtgcccc tgccagccag aagtgtagaa acaatcacca aaaagaaaga aaacctgaat
     8401 ggatgcacaa atgcgtgaat gcaagagtga gtgagaaaaa agatttgcag tgaccaagga
     8461 ggccggtctt gcaggggtgt taggattcat ccagtccctg gtgcctgatc tccaagagaa
     8521 ggaaaggcgg taaaaaaaga aaggctgaga gactggtaga aaaaaaattt gagattggag
     8581 aaaaaaataa aacaatttaa aaaaggagta aagaaggtaa taaattagca agccatgcag
     8641 tgaagtctgt gagaagggac tggtttagca cagaccatcc acattaattc aaatctccgg
     8701 ccccgaagtt gataaacaat aaaaacaatc acataaataa atgcctgaag ggataaattc
     8761 acacgttcca tgagaatgtg agaaaaagtt tgaaaaatta taggagggac tgggagaaag
     8821 aaagatgaaa gaaaagaaaa gaaaagagac ctatggaaga agaggcactt cctggataag
     8881 tacttacata taataaacaa atattattca ttaaatacaa taattagtaa gagctgaggt
     8941 tcatcataaa gaaagaataa gtagaggcat ggctgtgtga acaaatgaat gagaaggatg
     9001 attttgatta attcacgtct gcacccgagg ctcacgggaa taaaagaatg caaaaaagag
     9061 agcggtgaag gaggggcgta gacaattatg acaggatgga tattagcaac aaaaacatat
     9121 tgaaggaata aatcaatacg tacataattc tacgagagag agggccatgt tagaacaaaa
     9181 aaacgagatg gcaccgcgag ccaggaatta tgactgattc aaaactgggc tcttgagata
     9241 gttaaataaa gcctcaacca aatcaccagt atgaggaatt aacaaacaaa agcgagcccc
     9301 acatggaccg gtgctgagaa ggctccagga accacagatt atggttaatc caattctgtg
     9361 cacctgaggt ccataaataa aagaataaat attgaaataa aagagtgaca gaaagaatga
     9421 atggacccat gaacaactga attagaaatg gaaatgcctg gaacggccag gagtgcgttg
     9481 cccatgggat tgtcactcat ctcactccgg acacctgagg ttcctaagag tgaaaagatg
     9541 caagaaaaaa aacaacaaaa aaacccatca gggagtcaaa gaaagaggtg agggaaggca
     9601 aagtgaaaca aagtgaaaga gaaaggcggg gtgggggagg gactaataaa aagctaacga
     9661 agatatgggt gtgtctgaga ggaggatgtg ttaggattag ggatgaggtc atcatcaatc
     9721 ctaatgatgg atgagatcat ccaatccccc tttttagggc aagggaggat ggagagatga
     9781 aaaaaaaaag aagtgaaaaa aggagaaagg aaggatgata aacctccaac caaggtgata
     9841 aatggttagt taaaagagag gttgtctgag cagggattat aattagttta catacgtact
     9901 ccttaaatag ataaatacat cacacctttc caagaataaa tgaaaaatag aggaaatacc
     9961 cgacccaaag acaaggctgc atcttccaac cttttatcat ctttatgtaa taaaatatat
    10021 gcaattgagg tccataaata aaagaataaa tagcaaagtg taaaaggtga ctaaaggcga
    10081 ggaagaaaga tagcaaaggc aaataaacac atgggccaac gatggttatt ttgcacatgc
    10141 agttttgact aatacagtta tttcccagga gactggtaag taaaagaata cccaaaataa
    10201 gaaagaaagg aagggcaaat gcacgagtgc ataagtgaat gaatgaatga gtgagaggtg
    10261 gtgctgcctg gaccagggac aggaggatgt cgctcgcggg agcctgattt atccttctgt
    10321 gcacctgagt ttgtaagaat gaaggaacgg aaggaagagt gagagaaagg gagaaataca
    10381 aaagaaagga ataaggaatc aaaataatgt ataaacgaat aaataggaga agggagagct
    10441 tcatgaacga ggggctgtga ttaatcgaaa gtcgtgctgt tgaagtcggt aaataaaggc
    10501 gtcaaatcta aatgaatgaa cgaatgagtg actggaagaa atggacgaat gactggaagg
    10561 aagtgaggga ggaaggaagg aaggagggaa ggagggaaag aaggaaaaag gaaggaagaa
    10621 atagtaggca gagagggagg gaggactctt ccagtttggg gtccctgggt tcccgccagc
    10681 cgaagggagt gggtaccagg gaggcgtggc tcttggcatg ttgtgtgctt gttacctgca
    10741 ctttcttggc gggaggagct ggctcaggag gacccttgcc ttggagcgcc actgtcacac
    10801 cctggctgtg ggggccattt cacttcattg ctctcattct cagtttcccc atctgtaaac
    10861 tcggaatggc atcagctccc cgcttggacg gatcgtgggg cagatgctgt cctgcgtgtt
    10921 ggcagtgccc cgtcggaagg gctcaggccc cgggccctgc cgaaggttgt gggaactgga
    10981 cgtgggtcac ctgcgaggga ggcttttccc gccagggggc agcagagggt cagggagcag
    11041 gagaccctgg gggctgtgtg ggccccgccg gctgcgctgt cctgggaggg gcgccactca
    11101 catccagggc ctgtgcaggt ggcttgggaa gggggccagt aggggccaga tcaccagaaa
    11161 tcgtgttccc gcaactttcc gaaatgtgcc cgggagccca ccagcccggt cttctacggg
    11221 gtaggctgcc ttcccttctc gagtcagggg gtcccggggc aggtgcctct cagcccgggg
    11281 tttgcagaag tggtcccagg atcccggccc ccttgccttg gcatccccag agccggtttc
    11341 aaggccttgc tgtcttctcg actgttttcc gatgtactct ctgtatttcg gcggaaagcg
    11401 cgtttgcact gtgtgttgtt gaacttgtcc tctcccctcc tgacctgcct tcccccgccc
    11461 cccccgcccc ccccgccggg gttgggggct gtttgtactg gcgcttccga ccccagggac
    11521 gccctggttc tgtgcagtct cctttctctg taccggacag gatttgtgca cttgtgtgtt
    11581 gtgtgcctgt gtttgtctct aaaaatgagg accagaggcc ctctggactt ctcgattcct
    11641 atttgggaca ttaaaaaaaa aaactggatt cctaacaagc gccctgaaca ggaggagcca
    11701 gcttggctgg acccaggatc cgtggctggg agagcgggga gcgcagtggg ggtcgggtgc
    11761 ggctggggct agcgttttgc ctggtgggtg ggaggtgcca tgtgtctggg ccacgtgagc
    11821 agggcctcgt gggcctgagg tggtgctggg gcttcagggc tctgcacgct tattaaccct
    11881 gaagacacct gctcagagag ggtctccaga gagcccccca aacagcccag gtgtcattgt
    11941 gtggaccaga gtgggggtgg cagggacttg gcgcaggaag agcctgggag ggtctttttg
    12001 gagaacgctt gtgtggcttt aaaagtcagc tgagggtcga gaagacttag aaagtattgg
    12061 ggagaagttg ggggccacgg ccatgtgcac agaggaaata gggagggaca ggagagcaaa
    12121 cctctcgggg agccttctcc ccaggtccaa agggctgtcg agggggtcac gtggatggaa
    12181 atgggctgat gggagaatgc cccagggggg agggtgggtt gggattggat gagttctgtc
    12241 tgtttaggaa tattgagggc ctgagggtca tcgggtcaga gctcttaaga gcttgggatc
    12301 cagcattcta agggtctcca gttctgagat gctgagtttc aggacagggc ttgagggctg
    12361 tagaagccgg gggtggaatt tccacatggg cccccatctg gttctgtcca cgctcgatcc
    12421 atgaggtcca agatgggatc tcagcactcc tctctgatca gggcttatct caagtgtgtg
    12481 tttcttcttc tcactctttg aaaaaaagac aaattttgtc tgttgacttt gacctttgca
    12541 tgcacccctt gcacaaatcc ttcccctggt gacaccagga gctacaagtc tccttggatt
    12601 tctgtacaac tcccaactcc ctcctcagga agcttggcct cggggctggc cttccagagg
    12661 gtggaggacg gaggctgggc ctctggggca gatgggccaa gggctcccct gtgatcctaa
    12721 tgtaaacggt gtggatagca catgacctag agcaggagat cacccatcat tcgacatgtc
    12781 acccgttttt atttcttccc ttccgattcc tgtttacgag cacacttttt ttaatggaca
    12841 tctgattttt taaatgagcg ttcatttttt aaacctaatt gccattcttc accacataca
    12901 cttctttttt ttttacatct tgccttttcc acttaatatt ccatcgtcaa catttttctt
    12961 ccttccatag acttcgtcac atcactggct gccttgtgtc tcattgagag gctatgtcaa
    13021 tcattcacat caacctgcta ttgttactat tgctaggcat aattcatctt ttttttttaa
    13081 tgttacagat tatgccacag ctaatggctt agcacaccca cttttttttt ttcattctta
    13141 ccaattatct tcccacacct agaaatgatc atggtatgtc agtttcatgg tatgtcagtt
    13201 tctcctgcta ggctgtgagc cccttaaggg caagaagctt gttgaattga tctttgtatc
    13261 tctaatgcct gaaatgttgt agatgctaaa tgttagatgc gaggatggaa ggatggatga
    13321 agatgtgagt gagtgagtgg ttggttggct gttagaggag aggagggaag gatgggtgaa
    13381 taaaaggatt ggtgaatgaa caaatgaact tcttagggtt gagtctgttg aatgaaaggc
    13441 cgggaatttt tgtatggata ttgactaata gcggaaggct tacagcattt tataacgtcc
    13501 agcgatgtat tagcattttg ttatgatatt gctagtttat ctctgttaaa aagtgttttc
    13561 tgtcatttta acttgcattg ctttgattac taatgacggt tgaacatttt cacgtgtgtt
    13621 tgttaaaaat ttgcatttta tcttctgtga actgtttgtc caagtccacc gggtcatggc
    13681 tttgtgatga gactgtcaag gatggaacga gtgtcctcag gacgtagtga gcccttcctc
    13741 actggaggca ttcaaggggc aggccaggca gatacccgat gagggtggct ttaaggagat
    13801 tcaattagtg ggagtggggt tggcctagat gacccttcat ttgactttag gattttgctt
    13861 cttcctggga aatgggcata ttccctctgt cagcccagca gtatctaagg ccacgtcccc
    13921 ctggtgggct tgtgcattag tggtttatga actccaacct catcctctat aactcttgtg
    13981 gggcaggaat atctctttga ccctccaggc tccagagagc tgtgctaccg tcttgtagag
    14041 ttcagtggtg gacttcccac ccgcccccct cccccatttc acctcgagga ggacaggccc
    14101 ctgcacctcc acttgccacc tctcagcgca atcagctgag gcgatcagct gccgtttacg
    14161 ttcccggggt cctgtgagca gatgtcccct aggcctgcgt gttggtcttt ggggtttaat
    14221 tgattaaggg gacatgtcgg atcaggtctg ataatgaatc ctccttcaga aatgggacag
    14281 ttcaattccg tgagctgagg agcagaaggg accccatgtt ctcctcgggc ttcccctcac
    14341 ggcccacccc aaggctagcc ggggctcaaa ggtcaccgtg gccattcggg gagggcgcgt
    14401 gacccaagga gggcttgccc ctgcgttcca gaacacgctc tgctctcagc taagggccgc
    14461 atcttcccgc cgaccctcta atatagcacc gagtgctgtt tgcctgtatt ggaattcctc
    14521 acccacgtgt ttgccccagc atcgaagctc gggaggccag tgatgcttcc cgacatgatt
    14581 tcgatccatc catccatcca tgcatttggc ctacgtctcc tgacctggcg ctttggtctt
    14641 tccctttcct gaaagcaaac cttttcctct tgggcaggct gtgtagtgcc atgggctgtg
    14701 gttatgaagt gaacgccctt atttgtggct tctccctccg gggtcactgc tctgagcacg
    14761 tcccagctgg atgtcatctg ccaccgtcac ccacacggct tccttccccg tggcgctttc
    14821 ccatgcatca cacaccgtga gggaaccaag gccggggtcc gagagcggcc cccctccccc
    14881 gcccgtgagc ggagatgtcc ccccacctag gccaccctgc ctggtgcatg gtccctgtca
    14941 tgagctttgc cctcagcctc ctcccaccag atggcagtgg ttgtaactca tcccttcatt
    15001 ctttcgttca ctcagtccac aaacgtttga aaagatccgc cggtgctata ctagagctgg
    15061 ctcacaggac acgttccaac catccccttt ccaaggaaaa gatgagcatg tttgccaggg
    15121 gccatgtttg tgtgtcagta acaaggcggg gccattgatt tagctcccac ccctagaccc
    15181 gagttctgtt gaaagtttgg tagccctctc caactttgtt cctccccaaa ctgttgatta
    15241 gtaaccggca aactgtgttt cttggtgctc agaaatcata gcctgtagcc tccagaggcc
    15301 agaatgagag ctggggggtc tgaaacgaaa ggctgattct gcccgtgagc aggctttcaa
    15361 gtcattagaa caccctgatc tcgcacaaag gggaccttag agtcattcct gtccctttga
    15421 gatttgctaa ttctgggctc tatttagaga aaattgggga aggtgattgc ttgcttggat
    15481 ggcaaggatc gtgccccatg cggggtctgc acagaacaat ctttccgagg cacacagcgc
    15541 ttggcgaacc ctggatgcag cccccagcat ccatgcaggt cccaggccag gcggcatcca
    15601 ccccaccccc gcccccgccc ccccgccaac tccaacttag ctcactgcta cctgcttggg
    15661 acaaggcgta gatctagggg ctctactgag aattctgtat ttgctttatc gccttggaca
    15721 gtgggggtgg tggacaaagc caggaccctg gagctggaca aacgtgcggt ttaaacagat
    15781 ggcgacagct tgagtctgtc tcctggtgat accatggcac acccacctcg cagggctgtt
    15841 gtgaggcttg atgtaactag gatcttgaac tgcgattctg aaagggtgtg cgcgtgcccc
    15901 caggggtggg ttgggggtgg gttgacaggc caggaggggc agcctgattc gggcaggtta
    15961 gtgggaaatc tttttgtcaa acatgcagtg ggtattgtgg gaacgaacgc taaatttgta
    16021 tggcgttcga aggttagatg gttgtaattt gggcaggaac cttcatgctg ggtactgacg
    16081 acccctttgg gcaatgccct ggaccccctg gggtacgcgt tcacacctgt ctccggaatc
    16141 ggaatcggtt ggaaggcccc atctgtgtct tgcctaccgc tgtgtctggc ctgtgggcgg
    16201 cacttatcct ccacgagaga cccctcccag cagtgtcctc cccccaaaat attaggcacc
    16261 agctgtcaaa gacactatac ctctccccac taatgtcccc tcaccccatt cacaacattt
    16321 gggctcacat gtcagcagcc tgggtgccta acacagtacc aggccagtgg taggggtcac
    16381 cttccatttc tgttgaaagg atgggtaggt agatggtcaa ataacaaaat tgtaacccaa
    16441 tgcaagcgac ggttgtttat aacctttact aagagattgt attttgttcc taattaacct
    16501 gttaacagtt gttgtatctc acggactttt gtatgatgtg tgttgtttga aaaccaggac
    16561 tcttgcctct ggtgtcactc gatggaactt tcgctgtgcg attaacgagt cagtgttttg
    16621 tgttagaaat gagaatctgg ggggcgctta actaactgtg tggtgttggg caagtcactc
    16681 ctccttcctc tctgaccctc ggtctccttt tctctaagcc gtgggtcacc agaaagctta
    16741 ctacctcaca gggttgttgt gagggcccag ggctgctaat gaaatgctgg ctgtcactga
    16801 gaatggtcgc gtgttggggg ctgtctggaa gggaacaggg aagcctttcc tagttccaag
    16861 tgaataaaaa gtcagccttg atcttatgct aagattggat ttccaccagt cagtgggatg
    16921 tgtaaggcag aggcccagca gtttgctggc gtgtagcgat gtgggcccag ggtaaatatt
    16981 ggtttggttc atgagtgatg gctctttccc ttcctcggag cctgccttcc tctcccctcg
    17041 catcctgagc tgcttcttgt cgcgtgcagg gtgactgctc tgggtttgcc ctacctgtcg
    17101 ctgcctggtc cgtggagggg cttctgcaga catctgtggg tgccccgggg tgtttcttag
    17161 ggaggaaggc ggggggacag tttcgagaga gcccgagcag gttcctgggt aacatcttta
    17221 gggactaaaa cactttcttc tgccttttaa gggagaggcc cgtgctccta atttcctcca
    17281 cccccttcct tctttccctg actgtaaggt aaataaatga gtcttcagcc ccctccatgg
    17341 gcctggaacc aaacttgggg ctgttccacg cccacgagct ccctgcttga ttggcgtgtg
    17401 ggcccatttt acagataagc aagttgagaa ttggggaccg cggagcgtca gagccaggac
    17461 tgaacagtct tccatgaaaa gccgtggggc actctttcca cttggccaga caagccctcc
    17521 cggttaccgt ggccagcctc tgtcagccca aatgtgcccc agtgtgtctc tgtccccatc
    17581 acgtgcctgg cagtgctccc gtggaggtca cgctctccag agctctgccc tgctctggag
    17641 gaagtcccag gaggcacccc tgcaggggtc attttggatc gggggtctcc acgtgaccac
    17701 ggaattcctt tcctggccct tgtctcacgt gtgtgggaca tcagtgttct gctagaacat
    17761 cccagattcc atcccaggtg ggcttgagct ggggatcttg ttgagtccct ccctcccggc
    17821 ccctccctct gtggaagcct caccaccctc ctggtttggc ctctgccttt cacagctgca
    17881 gtgggctctg tctgcaccac ggccacccca tgtccttgag aacttgtccg aagctcccga
    17941 ggggcgggcc ccactgtagg gacaggttgg tagggtcctc ctctcagtag actgtgggcc
    18001 tgtgtgtagg tgtctgctcc ctgatggacc tcggtcctgt gtgacccagg gggagggact
    18061 ttctcaggtg cctggtgttt tcagggcctt gtcctcttga ggggggcagg cctgggtccc
    18121 tgcctctgga gggcaggtag ggagtcgaag ctcagtgagg tcgtgtctaa gcagctctta
    18181 gaccccctcc ctgaccctga gacctacgct tctctgaccc tacaccccct ccctgaccct
    18241 gagacctatg cttctctgac cctacctaac agccctgctg tctgcactag taggtgccta
    18301 ataggcgctc gctgactggt aaggcagggt tttagtggat gtgaaaagcc gaattgactg
    18361 ttggctgatg tacacgttga atctgcatgc gtttctgtaa gagaaaaagg tgtgttttct
    18421 tggcaaagac tcttcagggc aaagcctgag ggtcttttgt ctgagccggg ggctcacccc
    18481 agggggcggc cgccggacag accatcctga tggaaatagc tgtcttctga acattgttgg
    18541 aaatatttat gtctagaata aaactttatt tgggctaaaa tgtactccta tgtgtagtgg
    18601 tccaagtgat tttttttatt aagtacagtc gatttacaat gttgtgttca tttcttctgt
    18661 acagcaaagt gactcacgtg tacatatata tgttcttttt catattcttt tccattatgg
    18721 tttatcacag gctattgacc atagttccct gtgctgtaca gtgggtggtc caagtgattt
    18781 tgatgacgtg gcattcggca attcccaagt gggaggtgtc ctggccccgc ccatgccctc
    18841 tctgggcctc gggagccctc gccttgggga ggggaggtct tttacctgaa aagtctttgt
    18901 ctgtcctcac cattggtgac aatcagcatt aacctgtaag gcacatgccc agtctgggat
    18961 gcagccctgg tcagccagca gatgaggggg ggatcggacc ccagaccttg attcctttct
    19021 cctcctctcg ccctcctctc caccccctca agctgagggg cggacactta cccatttgag
    19081 ttctggttct ggcatcacca tttgccagct tagtggcctt gggagggtta cttggaccac
    19141 cccgagcctt ggttttcacc cctgtagaat gggtacatag tgacagtgtc cgctctgggg
    19201 ttgctggctc agtgccttgc tgcactccat atatactggc tctgagatca aggtctgggg
    19261 ctcgaagcca cctaagcacc tttatgtgtg tgtggcctgg atgagtttgc tcacctgtaa
    19321 tccggaaata gtcacatcta cctggcgtgg ttactgtcgg attcaatgag attgttcacg
    19381 tgaaaataaa tgcttcgtta cccggcctcc cagttggggc tggccacagc accctgcagc
    19441 ctgtgggtcc tggtcgcgga agccctgggc tttctggaac tgccaaaagg gggctgcagg
    19501 gtggagtgga gggcgtcagg ggagcacccg gccagctttg gagggcagcg agggaaggaa
    19561 gggtttgctt ttcagtacag agatggagca gcttcagagg ggacgggatt gaggtccaag
    19621 tgggcaggat cagggagaag ttttagaaag aggaggaagc tgatagttta gaaaacaccc
    19681 aagtttaatt ggcaatgggt tggacaggag agctggggtg ggttttagca aggccaagca
    19741 tcctagattt gggttagtga gtggaggacc atcagaggtt cctggtgcag gggggtgtga
    19801 tgcttctgga actctctccg ggagggggag accaggtgtg gggtgccaga gctgaggggc
    19861 ggcaggtaga gggcaggggc tagtggctgg gtgctcacct cgcccccatg gctgctgggg
    19921 gccagggccc tctccccgtg tggtccaggc ccctgagcga cccgtctcct aaccctctct
    19981 ctgctccttg cctccaacgt gcctgtgtgc atgagaactc gtgtccgcca gtgagcccag
    20041 gagcgggtgg ccttcatcag cacctgtgtc tctctcagcc tccacagcca cggggatacc
    20101 tgcacgcgtt cccgtgggac aggccggacc caaagactct ggacccgggc cactcccctg
    20161 catggacggg cgcgtccacc ccgcctcccc gccctctgac tgatggactt cactgatctg
    20221 agtgtcagac acgcgggctg gacccctccc cacccctcac gaaccctgag a
//
LOCUS       XM_032620273           21940 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X4, mRNA.
ACCESSION   XM_032620273
VERSION     XM_032620273.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21940
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..21940
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 139 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     CDS             12181..13323
                     /gene="LOC116747726"
                     /codon_start=1
                     /product="uncharacterized protein LOC116747726"
                     /protein_id="XP_032476164.1"
                     /db_xref="GeneID:116747726"
                     /translation="MNERMSDWKKWTNDWKEVREEGRKEGRRERRKKEGRNSRQRGRE
                     DSSSLGSLGSRQPKGVGTREAWLLACCVLVTCTFLAGGAGSGGPLPWSATVTPWLWGP
                     FHFIALILSFPICKLGMASAPRLDGSWGRCCPACWQCPVGRAQAPGPAEGCGNWTWVT
                     CEGGFSRQGAAEGQGAGDPGGCVGPAGCAVLGGAPLTSRACAGGLGRGPVGARSPEIV
                     FPQLSEMCPGAHQPGLLRGRLPSLLESGGPGAGASQPGVCRSGPRIPAPLPWHPQSRF
                     QGLAVFSTVFRCTLCISAESAFALCVVELVLSPPDLPSPAPPAPPAGVGGCLYWRFRP
                     QGRPGSVQSPFSVPDRICALVCCVPVFVSKNEDQRPSGLLDSYLGH"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccaggta ggggctgcac ccagatgggt gctgggctga
      961 cttgagtaag cacatgcatg gtgcacgtgg tcatttccag agcactttcg atgttctgtg
     1021 cctatgttat ttctatgtcc gatgtccatg tgagtgaggt cgcctcattt acaggtgagg
     1081 atgaatttgg catcgatttg agtaattcta aaagatggag agcgagaaga cgtatttgaa
     1141 cagagtgccc ctccctaggg gacgggactg attcacgttt acagtgaggt cgctgaggct
     1201 ggaggagcgt cgttgctggc aagagaaggg gtcagagttg gaccctgggt gccatttgtg
     1261 gctgcccctt accccctgcc ccagagttac actaagagcc ctttgatttc caatcaaatg
     1321 tttgacaatg gggcagcctg tttgaaatcc cagctgccca gggtggtctt gggggtcttg
     1381 ggtggcccca atgctggtac catgtgctgg cctcacctct caataatggt gtgaccttaa
     1441 atacgttgct taacttctcc aagtctcagt tcttttcatg gcctaaatgg ggattaggga
     1501 agaaaaaaaa aaaaaggcaa cacaaaaaaa cacccgcgtt tatctacccc acagggcgct
     1561 tttgaaggcc aaatgatgta accactatga aagtgctttg taaattgctg tggaaattgc
     1621 gagatactta acaccaggaa gctgtccctg attatcgcat gcccagccct gtcccccctc
     1681 agttaataac agctagcacc cactaggttc tgtgcttgcg ctcagtaaat aaattccaga
     1741 agaaataaaa acagaattaa ttcaacaaac attttctgga ccgcctacga tatgccccgc
     1801 acaccaggcc tggtatgtga tacaaagatg atgaaaacag tctcttggaa gctaattggg
     1861 gtcctcgttt gaccggcact ttctttcgtc cccttttaag ccaaccagtt ttgtccggac
     1921 gagacaaaaa caacttgggc tgctttagag aaacccggct tggtgtagac aatagctccc
     1981 gggcttctga aaggggctga ttggattatg tggcaaatga aggtggaagg atgacttgga
     2041 aggtgacaaa tgaagtgggc ggagatctgc tgtgagttaa tccaggctat taggagggac
     2101 cttttgtctt ccagaggctg gcaggagctt ttaccactgg gttttacatc cttaatgtaa
     2161 aggacgcata atttatggtc agtgaaaacc caggccccag tgagatttga gtgggctgta
     2221 aaatcgagcc tagtgagtaa ttacagggag catttatgtc tccctttgca gttggcaaag
     2281 acctttttgc aatcatcaat tcatttgaac ctcacaactc cctgtccgga cccggggctg
     2341 gcctgagcct cctaggggaa gaggccgtca agtggccttc agattggggc gtctgaggca
     2401 tctgacacgg tcaggggaga ggcgtcccct gccctggcct ctcctgtctc agacctggcc
     2461 ttccggccag cagcgattcc ctccgaattc ctaacttggc tcggtcggca gctctgagcc
     2521 tccgggcccc tcctgctctg ctttctagcc actctctctt tcctttcgca gctaagcttc
     2581 tcgaaaggcc tgtctacact tgctgtcttc cttcctcacc tccagtttcc tctccaaccc
     2641 actgcttcct gacctcttct actccgctca tcggctgtca ctaaggtaat gactttcctg
     2701 gaggttaacc ctggacaccc tcatgggcac atgacgcgca gacacgcatc cagtgtttca
     2761 cattttccag ctccagtcac ttctatggac agacacgccc ctgtagacct cacagagtca
     2821 cctgctcctg gctttcctcc tccttagttt ctgctaggaa ctggagtatc cagacctctc
     2881 accttccgga atctgcctct tagcatctca ccctgggttg gagtctaaac cacctagagc
     2941 tgaggccttg gggtaggtca gtttttccaa gccacctttt tctcagttgc agtatagggt
     3001 gtctttacct ggcaggtcag gtgggcggtc ttgcaggtaa gattttaagt cccactcttt
     3061 gagggacttg aaataaattc aataaagtgt tcatgagaaa atacaattga ggtcatcgtc
     3121 agattttctt gtaggttaag ttcccacagg gaggaccaaa gggagaagaa agaggtgggg
     3181 ggagggggca gtgggagaga aagaagcaaa gaatagaaaa gggcaccaaa gacaaaaaaa
     3241 gtaggaaagg gagacttaga aaatatgaaa acccaccaaa acaaacaaac aaacaaacaa
     3301 aaaaccacat ccagaggaag gagtttcttc ttgggttagg caaaaagaaa gtaaacagga
     3361 aaaaggttta aaattcatta tcccagtgac aaatcccagg aagctttcaa atcaaattgc
     3421 cccattttgg gtttttaact ccttctatca ggtttaacct ctttacctcc tccatcctgg
     3481 ttaaacgccc cctcggctgg tgattaaatc ccgaagctac acggagtctt tcaatgaatg
     3541 aatggcccac agaaagagac cccccctccc cccagctgtg tttttcagtt ttattccact
     3601 ttccgccctt ttccgttaat gaacacaggg ctaatctcgg gcctcgtcga ggaagaggct
     3661 gcagacgtta atgaggtagc tgctggattc cagtattcgc cccttaagga ggcggctttg
     3721 tctgggaagg aaaaacacgc tgattatcat aataagtgct gcagggccgc ggccgcgggg
     3781 cacgggctcc gtgggtctga agccacactt ctaattttgg tgctggagcc caggattcat
     3841 tttgcttccc atttaagtct ctgcctctgt cccagcttgc gatcccttga gcggggtgga
     3901 aagttgcggg cagctttggg ccacagatag ggctgctttg cagaaagttc ctttgttcga
     3961 ccctacatgc agaccagcaa tgggccaggg cgtttcaggc ctctgggatc cgttttccca
     4021 aaagcagaga gatgggggtg cacgtttcca actctgcctc acaccagact tgtttttagg
     4081 actcactggt gttgagcctt taaggtcctc aaatgctaga aaagccaagg cttaggcata
     4141 gtccccgtag aatgatcgca gggtcagtgc ccgtggaacg ctccttccag gtcaggaaac
     4201 ggatgggtat tggtacccca gtccccccac caagggaagg gcatggttgg ggctcacatt
     4261 tggcccccac ataggatgag agggatgaga ggaccagcga tttgtcagga ccactcagat
     4321 ccagcaccag aacctgtagt cactcctttt atcccctaaa tgtccccctc ccatatgtcc
     4381 tgcacgcccc cccgcccccc ccccccaaat tctccctttc tgtcctgatc cttagactcc
     4441 caggagccca tgaatgtctt tatttttaat tgttattacc tttttttttg gccgcaccct
     4501 gcggcatgtg acatcctagc tccccgaccg gggatcgaac ccgcgccccc tgcattggaa
     4561 gcgcggagtc ttaaccactg gaccaccagg gaagtctccc agtaatcttt ttagagcaag
     4621 tgtgcctgag ttggaaactt gcccttatga atcctgagtt ttggatgttt ctcaccccaa
     4681 gacagatcaa tcaagatgag atcactccaa ttaaacttca ggctctaccc agaccttcag
     4741 ccaaatggcg gggggcgggg gggggacaac taagggaaaa gtgaggtgtt tggtgcaaga
     4801 aaacttttag ttgaaaactt ccttaactta cttgttggct aaaggttccc tggcattcat
     4861 ggatcagaat ttgatactct ttccaagtta acaaaaccaa ccctcgtcca gccccctaaa
     4921 tggaaatgtt gaaggaggcc caggtggcca gttggggcaa ctccactcct tttggtggca
     4981 gtgacccaga tgttgcctgg acttggggac tggatgaggg tgagcacctc tgagaatagg
     5041 gatcccacct acactcctcc gtgcactttt gggagagtaa aatgacagag cagttcctgg
     5101 tgtttctaaa agaggattta ttttaaatag gaaaaaaaaa ataacccata ggaccctttt
     5161 caccctcaca tacatactaa ttaaaatacg tgtcccaaag tcatcaatat tccagcacct
     5221 gagaacctgg ggagggggtg gaaggcagtc gaattcaact tctggggaca ccagcagagg
     5281 ggtctgtgct acttgctctt gagtgtatgg cagcctgttt taacctgcat cctcgtttcc
     5341 gtggtccccc ttctgtgcct ggatggatgc tgctcccagc tgcctatgca cacgggaccc
     5401 ctgtgcccca cgcttccagc ccagaggtcc tgtcaggctt cctgagtggg ccctgtgact
     5461 cccagggccc actggtctcg gcatcctccg ttaagtgaat cccagaggct caggagatcc
     5521 cctcgacccc agttcttctg attttctgtt ttttctgctt ttattgcccc tttctcttct
     5581 ccatctaccc attcttctct acttcatcac catttcctca tctggtcctc tgggggggtg
     5641 tcctaggcca gccactcctc ctttgggtgt cccagcacca gcctggcaca aagtggggtt
     5701 cagtaagagt atgtggggtg tatgtttgga caggtgagtc aatgaaggaa cttgactgcc
     5761 atacttgagc tgctaggcgg gagttgttga ggatgcaaga agttttaggt caaaagggtg
     5821 gagggtggat gtccttttac tgagaggagt gggcattgcc ccaccccagc cccatttgag
     5881 tgggggcctc accagtctca ccccttcgtt cactcatgcg tccatcccgt catccaacag
     5941 ttgatcctta ctgagcaagc ccacggtccg gccccgggct gggcacctgc caccctagcg
     6001 catcccttga tggcctctgc gtccccgggg ggtggcgggc cagggggttg cttctgccca
     6061 gggtggcctc gtggctcccg ggcgcgggag gagcggactc ccgctctgca ggcaaggcag
     6121 gtggggtggg gtgtgagggg cgggcctggt ttggccggct ggcccccttt tagttcacac
     6181 cctggggggg ggcgggggcg ggcctggaac ctgcccttct ctagggctcg ccgcaggtcc
     6241 cagccagccc ctccggccct ctcggcctcc caccccatcc cctagctgag tgctcgtggc
     6301 tgagctggac ccccgtacct gaagttcagg actgaggtgg cggcgtacgg gcagctgtgg
     6361 tgtatgtccc cttgggctct ggccacacag gtctccctct tgagttgggg tccgtgagct
     6421 ggacccctcc ctccatgatg ccttcctccc cctggggcta agtccagctc ctttgccccc
     6481 gacttgtggg ctggggcgtg tccaacgtca agggcccctg gccgggaacc tccagggagc
     6541 actacaggcc ctgcctctgc ctagctgccc acctgctctg ctctccctgg cggctcctcc
     6601 cctggctccc ccctccccct tgctaggttg actgcccacc tgtggctccg ctttccccac
     6661 ctgacccatt tccccttctc tgtgccccag tcactgggct tgggaccctc tgggtctcac
     6721 ccatccagcc ctctacctaa caggttggtt ttcctcgctg agcccacacc tgtggttacc
     6781 tggccctgcc tgctgccccg cccacctccc acctgcttgc ctttcgcctg cctctccccc
     6841 agggcaagga ggccctcccc ctcagggtcg cccaagtttc cggttggtct ccagtgctcg
     6901 tggcacccct cccctaccat cctcagaggc ctcctcccat gggcctggcc tcccgggctc
     6961 tgagtgcctg tgggctgctg ccagacctct gtcctgctcc cttcccccca ccccaatccc
     7021 cccagactgc ttgtcatcat gtcctaccgg gcctgcctgt acggccgtcc tgtatccacg
     7081 agtcaggctc tgccttgccc ccggcctcgt ggccggtctg ggggctgcca cctggcctgt
     7141 cgcttctgtt cttgtgcttc tcttcttgta ccttctcctg tcattggcat ccctacgagc
     7201 cacctccctc caccgaaaac caggctgcag gtcagcccgt cctcgacacc ctggcggcga
     7261 cagtcggctg aagaactgga cggaagaggc aggagagttg ccctggacca gcgctccttc
     7321 agaacggtca cctggcatct catgcccacc tggtgccccg tgactccctc ctggtttggg
     7381 ctgaagccgt ctcgaatcct ccgtgggaca ggaccgtgga cacgcaaccc cagtaccctc
     7441 cagctccaaa atctctccct ttggctctta tgccgcaggg cagactagga tggaagtggc
     7501 ctagctgggg ggcccttcaa agggccaagg agaaaacgcg ggccaagaga ccagcctctc
     7561 aaacgggctt cgagctgcag tgaccttcac ttaccttccc ccccttgaaa tgtctggaaa
     7621 acggaatgga cagattttct gtcttcaaag tttccggcta aacctcttca agttctttat
     7681 tgtttgggac tgagacactc agcaatggta atgggtagtt ccttttgtat ttgccttgaa
     7741 aggccaaaat atttttatat ggctacagac aaagccatct gttttaagat gaactctatg
     7801 tccgtcgttt cccaccgggg agatcgtgta taccgtgtgt gtctctgtgc actcctgggt
     7861 cttgaaacag gtttctcatg gggatggcca ttcacagggg tccacgggga agcacctgcc
     7921 ccaccaaggg ggcctgggga ctctgaccct catctgtgta ggatgtgacc cccggggggg
     7981 cggcgggtgt tctggctgca ctaacatgta ctctgcctgt gcctgcatcc gccatgcata
     8041 tgtgtcaagg actgtgggtt gtgtgcacct tggtgggaag aagctggaag gtcaaatata
     8101 ctgtgaatgt tctattgttc tggtcgggag gtcattttgc tgggttctgt tacctggtcc
     8161 aaataagtga atggatgaat aaacgaatga aggcgtgaaa gagtgaagaa actaataaat
     8221 aggtaaagaa gcgtaccctg aaggagatcc aatttgaggc acaggagctc gatagataag
     8281 tcaataaagc attgaatcag tatataaaca gggccaggca ggaaccgatg tcaggtcatc
     8341 gtggactaag ggaacacgta caattcaagt atgtagcgcc taaagtttgt ccataaaaga
     8401 ataaagccta gatgaaagaa tgaataagaa gtcgagaggc ataaaccagt agtgagggtg
     8461 agattatgcg gcccatcaaa gtgaaaagat gcaagagaaa gggcacggac ggttgaaagg
     8521 aagaagaaaa acggaaagac gcaaaataat aactaagcag gaagatcact tttaaaatta
     8581 gggggtgaga aaatatataa ggaggactat gtcaggttat taagagccaa gcattaggat
     8641 tagtccagat acatgctcca gccatagaaa aaaaagagaa acaacagagg aagagttcaa
     8701 aaggtagtta aaaccgaaaa aggacccagg ggaccagagg tgagagttaa ctttaaccaa
     8761 attttttcta actctgggca cacataaata aataaacact gaaaagaaag aaagccaaaa
     8821 aaagaaaaaa aaaggagaaa ggaaaggatg ggatgaataa gtagtggacg tacgtggacc
     8881 cagatgggag cgtggcagga ggggtttcga gtcatccagt cctgggacct gaggtctgtt
     8941 ccacgaaagg actaaaaaag agagagaaca aaataaagca tctaaataaa aaccaagaaa
     9001 tatggaagaa aaagtaacaa gtgttcagtc caggaataca ttagtgggtg aataaataaa
     9061 catataaaag aaggtggtgc taggagtcga ggtgcaggag actgtcatga atcaaggttg
     9121 gtccagttct aaaagccgca gtactatcag aacataataa gcatctccat aaacaagtga
     9181 atgagcatct aaagaaacaa agacacgatg aagtgaggca gggaggggcc atggccacag
     9241 gcactcctga ggggcctgtt ggaaggttgt aattaatctt cgccactgtc tgggcaccaa
     9301 agatccggga ggaggaaaga agacagacga gaaaggagga gatttggaaa gctgcaacga
     9361 aagagagaaa gaaagagtta agaggtggta aatgggtata ttcttggaag agggttaggc
     9421 taagagtggt aaaaaaggac cagccccaac tgtagatcac aatgggtcaa aatctgggca
     9481 ctcgttccgt tagtagagga gtgtatacct aataagaaga gaaacacagc aggaaggaag
     9541 aatggtatga aggaatgaag gaaggaagga aggaacgaga cgtggagagg cagggcccca
     9601 ggatgccgtt tgcaggtaac gttataggat tcatcacttc atggcacctg agcgccgacg
     9661 aatgaaagaa tgcaagaaag aaagagtgag agagcgaaag agagaaacag tgaaaatggg
     9721 agagaaatga taaatcagag actaaattag aaatgaaaaa ggaaaaaagg agaaaggtaa
     9781 tatattaaca gacagataga taaatacata tataggagag agcagctcta ggagtaagaa
     9841 tgagaggggg gcctgaacca agcacagtga cgaattcaca tctgggcttc tgagatgggc
     9901 cgccacctac ccaaccagga ggcagttcaa agctgaaatg cataagggag gacctcagtg
     9961 aggccaggga ggggaaggcc cactgcttgt agattatcat gtatccagtt aggtgcccct
    10021 gccagccaga agtgtagaaa caatcaccaa aaagaaagaa aacctgaatg gatgcacaaa
    10081 tgcgtgaatg caagagtgag tgagaaaaaa gatttgcagt gaccaaggag gccggtcttg
    10141 caggggtgtt aggattcatc cagtccctgg tgcctgatct ccaagagaag gaaaggcggt
    10201 aaaaaaagaa aggctgagag actggtagaa aaaaaatttg agattggaga aaaaaataaa
    10261 acaatttaaa aaaggagtaa agaaggtaat aaattagcaa gccatgcagt gaagtctgtg
    10321 agaagggact ggtttagcac agaccatcca cattaattca aatctccggc cccgaagttg
    10381 ataaacaata aaaacaatca cataaataaa tgcctgaagg gataaattca cacgttccat
    10441 gagaatgtga gaaaaagttt gaaaaattat aggagggact gggagaaaga aagatgaaag
    10501 aaaagaaaag aaaagagacc tatggaagaa gaggcacttc ctggataagt acttacatat
    10561 aataaacaaa tattattcat taaatacaat aattagtaag agctgaggtt catcataaag
    10621 aaagaataag tagaggcatg gctgtgtgaa caaatgaatg agaaggatga ttttgattaa
    10681 ttcacgtctg cacccgaggc tcacgggaat aaaagaatgc aaaaaagaga gcggtgaagg
    10741 aggggcgtag acaattatga caggatggat attagcaaca aaaacatatt gaaggaataa
    10801 atcaatacgt acataattct acgagagaga gggccatgtt agaacaaaaa aacgagatgg
    10861 caccgcgagc caggaattat gactgattca aaactgggct cttgagatag ttaaataaag
    10921 cctcaaccaa atcaccagta tgaggaatta acaaacaaaa gcgagcccca catggaccgg
    10981 tgctgagaag gctccaggaa ccacagatta tggttaatcc aattctgtgc acctgaggtc
    11041 cataaataaa agaataaata ttgaaataaa agagtgacag aaagaatgaa tggacccatg
    11101 aacaactgaa ttagaaatgg aaatgcctgg aacggccagg agtgcgttgc ccatgggatt
    11161 gtcactcatc tcactccgga cacctgaggt tcctaagagt gaaaagatgc aagaaaaaaa
    11221 acaacaaaaa aacccatcag ggagtcaaag aaagaggtga gggaaggcaa agtgaaacaa
    11281 agtgaaagag aaaggcgggg tgggggaggg actaataaaa agctaacgaa gatatgggtg
    11341 tgtctgagag gaggatgtgt taggattagg gatgaggtca tcatcaatcc taatgatgga
    11401 tgagatcatc caatccccct ttttagggca agggaggatg gagagatgaa aaaaaaaaga
    11461 agtgaaaaaa ggagaaagga aggatgataa acctccaacc aaggtgataa atggttagtt
    11521 aaaagagagg ttgtctgagc agggattata attagtttac atacgtactc cttaaataga
    11581 taaatacatc acacctttcc aagaataaat gaaaaataga ggaaataccc gacccaaaga
    11641 caaggctgca tcttccaacc ttttatcatc tttatgtaat aaaatatatg caattgaggt
    11701 ccataaataa aagaataaat agcaaagtgt aaaaggtgac taaaggcgag gaagaaagat
    11761 agcaaaggca aataaacaca tgggccaacg atggttattt tgcacatgca gttttgacta
    11821 atacagttat ttcccaggag actggtaagt aaaagaatac ccaaaataag aaagaaagga
    11881 agggcaaatg cacgagtgca taagtgaatg aatgaatgag tgagaggtgg tgctgcctgg
    11941 accagggaca ggaggatgtc gctcgcggga gcctgattta tccttctgtg cacctgagtt
    12001 tgtaagaatg aaggaacgga aggaagagtg agagaaaggg agaaatacaa aagaaaggaa
    12061 taaggaatca aaataatgta taaacgaata aataggagaa gggagagctt catgaacgag
    12121 gggctgtgat taatcgaaag tcgtgctgtt gaagtcggta aataaaggcg tcaaatctaa
    12181 atgaatgaac gaatgagtga ctggaagaaa tggacgaatg actggaagga agtgagggag
    12241 gaaggaagga aggagggaag gagggaaaga aggaaaaagg aaggaagaaa tagtaggcag
    12301 agagggaggg aggactcttc cagtttgggg tccctgggtt cccgccagcc gaagggagtg
    12361 ggtaccaggg aggcgtggct cttggcatgt tgtgtgcttg ttacctgcac tttcttggcg
    12421 ggaggagctg gctcaggagg acccttgcct tggagcgcca ctgtcacacc ctggctgtgg
    12481 gggccatttc acttcattgc tctcattctc agtttcccca tctgtaaact cggaatggca
    12541 tcagctcccc gcttggacgg atcgtggggc agatgctgtc ctgcgtgttg gcagtgcccc
    12601 gtcggaaggg ctcaggcccc gggccctgcc gaaggttgtg ggaactggac gtgggtcacc
    12661 tgcgagggag gcttttcccg ccagggggca gcagagggtc agggagcagg agaccctggg
    12721 ggctgtgtgg gccccgccgg ctgcgctgtc ctgggagggg cgccactcac atccagggcc
    12781 tgtgcaggtg gcttgggaag ggggccagta ggggccagat caccagaaat cgtgttcccg
    12841 caactttccg aaatgtgccc gggagcccac cagcccggtc ttctacgggg taggctgcct
    12901 tcccttctcg agtcaggggg tcccggggca ggtgcctctc agcccggggt ttgcagaagt
    12961 ggtcccagga tcccggcccc cttgccttgg catccccaga gccggtttca aggccttgct
    13021 gtcttctcga ctgttttccg atgtactctc tgtatttcgg cggaaagcgc gtttgcactg
    13081 tgtgttgttg aacttgtcct ctcccctcct gacctgcctt cccccgcccc ccccgccccc
    13141 cccgccgggg ttgggggctg tttgtactgg cgcttccgac cccagggacg ccctggttct
    13201 gtgcagtctc ctttctctgt accggacagg atttgtgcac ttgtgtgttg tgtgcctgtg
    13261 tttgtctcta aaaatgagga ccagaggccc tctggacttc tcgattccta tttgggacat
    13321 taaaaaaaaa aactggattc ctaacaagcg ccctgaacag gaggagccag cttggctgga
    13381 cccaggatcc gtggctggga gagcggggag cgcagtgggg gtcgggtgcg gctggggcta
    13441 gcgttttgcc tggtgggtgg gaggtgccat gtgtctgggc cacgtgagca gggcctcgtg
    13501 ggcctgaggt ggtgctgggg cttcagggct ctgcacgctt attaaccctg aagacacctg
    13561 ctcagagagg gtctccagag agccccccaa acagcccagg tgtcattgtg tggaccagag
    13621 tgggggtggc agggacttgg cgcaggaaga gcctgggagg gtctttttgg agaacgcttg
    13681 tgtggcttta aaagtcagct gagggtcgag aagacttaga aagtattggg gagaagttgg
    13741 gggccacggc catgtgcaca gaggaaatag ggagggacag gagagcaaac ctctcgggga
    13801 gccttctccc caggtccaaa gggctgtcga gggggtcacg tggatggaaa tgggctgatg
    13861 ggagaatgcc ccagggggga gggtgggttg ggattggatg agttctgtct gtttaggaat
    13921 attgagggcc tgagggtcat cgggtcagag ctcttaagag cttgggatcc agcattctaa
    13981 gggtctccag ttctgagatg ctgagtttca ggacagggct tgagggctgt agaagccggg
    14041 ggtggaattt ccacatgggc ccccatctgg ttctgtccac gctcgatcca tgaggtccaa
    14101 gatgggatct cagcactcct ctctgatcag ggcttatctc aagtgtgtgt ttcttcttct
    14161 cactctttga aaaaaagaca aattttgtct gttgactttg acctttgcat gcaccccttg
    14221 cacaaatcct tcccctggtg acaccaggag ctacaagtct ccttggattt ctgtacaact
    14281 cccaactccc tcctcaggaa gcttggcctc ggggctggcc ttccagaggg tggaggacgg
    14341 aggctgggcc tctggggcag atgggccaag ggctcccctg tgatcctaat gtaaacggtg
    14401 tggatagcac atgacctaga gcaggagatc acccatcatt cgacatgtca cccgttttta
    14461 tttcttccct tccgattcct gtttacgagc acactttttt taatggacat ctgatttttt
    14521 aaatgagcgt tcatttttta aacctaattg ccattcttca ccacatacac ttcttttttt
    14581 tttacatctt gccttttcca cttaatattc catcgtcaac atttttcttc cttccataga
    14641 cttcgtcaca tcactggctg ccttgtgtct cattgagagg ctatgtcaat cattcacatc
    14701 aacctgctat tgttactatt gctaggcata attcatcttt tttttttaat gttacagatt
    14761 atgccacagc taatggctta gcacacccac tttttttttt tcattcttac caattatctt
    14821 cccacaccta gaaatgatca tggtatgtca gtttcatggt atgtcagttt ctcctgctag
    14881 gctgtgagcc ccttaagggc aagaagcttg ttgaattgat ctttgtatct ctaatgcctg
    14941 aaatgttgta gatgctaaat gttagatgcg aggatggaag gatggatgaa gatgtgagtg
    15001 agtgagtggt tggttggctg ttagaggaga ggagggaagg atgggtgaat aaaaggattg
    15061 gtgaatgaac aaatgaactt cttagggttg agtctgttga atgaaaggcc gggaattttt
    15121 gtatggatat tgactaatag cggaaggctt acagcatttt ataacgtcca gcgatgtatt
    15181 agcattttgt tatgatattg ctagtttatc tctgttaaaa agtgttttct gtcattttaa
    15241 cttgcattgc tttgattact aatgacggtt gaacattttc acgtgtgttt gttaaaaatt
    15301 tgcattttat cttctgtgaa ctgtttgtcc aagtccaccg ggtcatggct ttgtgatgag
    15361 actgtcaagg atggaacgag tgtcctcagg acgtagtgag cccttcctca ctggaggcat
    15421 tcaaggggca ggccaggcag atacccgatg agggtggctt taaggagatt caattagtgg
    15481 gagtggggtt ggcctagatg acccttcatt tgactttagg attttgcttc ttcctgggaa
    15541 atgggcatat tccctctgtc agcccagcag tatctaaggc cacgtccccc tggtgggctt
    15601 gtgcattagt ggtttatgaa ctccaacctc atcctctata actcttgtgg ggcaggaata
    15661 tctctttgac cctccaggct ccagagagct gtgctaccgt cttgtagagt tcagtggtgg
    15721 acttcccacc cgcccccctc ccccatttca cctcgaggag gacaggcccc tgcacctcca
    15781 cttgccacct ctcagcgcaa tcagctgagg cgatcagctg ccgtttacgt tcccggggtc
    15841 ctgtgagcag atgtccccta ggcctgcgtg ttggtctttg gggtttaatt gattaagggg
    15901 acatgtcgga tcaggtctga taatgaatcc tccttcagaa atgggacagt tcaattccgt
    15961 gagctgagga gcagaaggga ccccatgttc tcctcgggct tcccctcacg gcccacccca
    16021 aggctagccg gggctcaaag gtcaccgtgg ccattcgggg agggcgcgtg acccaaggag
    16081 ggcttgcccc tgcgttccag aacacgctct gctctcagct aagggccgca tcttcccgcc
    16141 gaccctctaa tatagcaccg agtgctgttt gcctgtattg gaattcctca cccacgtgtt
    16201 tgccccagca tcgaagctcg ggaggccagt gatgcttccc gacatgattt cgatccatcc
    16261 atccatccat gcatttggcc tacgtctcct gacctggcgc tttggtcttt ccctttcctg
    16321 aaagcaaacc ttttcctctt gggcaggctg tgtagtgcca tgggctgtgg ttatgaagtg
    16381 aacgccctta tttgtggctt ctccctccgg ggtcactgct ctgagcacgt cccagctgga
    16441 tgtcatctgc caccgtcacc cacacggctt ccttccccgt ggcgctttcc catgcatcac
    16501 acaccgtgag ggaaccaagg ccggggtccg agagcggccc ccctcccccg cccgtgagcg
    16561 gagatgtccc cccacctagg ccaccctgcc tggtgcatgg tccctgtcat gagctttgcc
    16621 ctcagcctcc tcccaccaga tggcagtggt tgtaactcat cccttcattc tttcgttcac
    16681 tcagtccaca aacgtttgaa aagatccgcc ggtgctatac tagagctggc tcacaggaca
    16741 cgttccaacc atcccctttc caaggaaaag atgagcatgt ttgccagggg ccatgtttgt
    16801 gtgtcagtaa caaggcgggg ccattgattt agctcccacc cctagacccg agttctgttg
    16861 aaagtttggt agccctctcc aactttgttc ctccccaaac tgttgattag taaccggcaa
    16921 actgtgtttc ttggtgctca gaaatcatag cctgtagcct ccagaggcca gaatgagagc
    16981 tggggggtct gaaacgaaag gctgattctg cccgtgagca ggctttcaag tcattagaac
    17041 accctgatct cgcacaaagg ggaccttaga gtcattcctg tccctttgag atttgctaat
    17101 tctgggctct atttagagaa aattggggaa ggtgattgct tgcttggatg gcaaggatcg
    17161 tgccccatgc ggggtctgca cagaacaatc tttccgaggc acacagcgct tggcgaaccc
    17221 tggatgcagc ccccagcatc catgcaggtc ccaggccagg cggcatccac cccacccccg
    17281 cccccgcccc cccgccaact ccaacttagc tcactgctac ctgcttggga caaggcgtag
    17341 atctaggggc tctactgaga attctgtatt tgctttatcg ccttggacag tgggggtggt
    17401 ggacaaagcc aggaccctgg agctggacaa acgtgcggtt taaacagatg gcgacagctt
    17461 gagtctgtct cctggtgata ccatggcaca cccacctcgc agggctgttg tgaggcttga
    17521 tgtaactagg atcttgaact gcgattctga aagggtgtgc gcgtgccccc aggggtgggt
    17581 tgggggtggg ttgacaggcc aggaggggca gcctgattcg ggcaggttag tgggaaatct
    17641 ttttgtcaaa catgcagtgg gtattgtggg aacgaacgct aaatttgtat ggcgttcgaa
    17701 ggttagatgg ttgtaatttg ggcaggaacc ttcatgctgg gtactgacga cccctttggg
    17761 caatgccctg gaccccctgg ggtacgcgtt cacacctgtc tccggaatcg gaatcggttg
    17821 gaaggcccca tctgtgtctt gcctaccgct gtgtctggcc tgtgggcggc acttatcctc
    17881 cacgagagac ccctcccagc agtgtcctcc ccccaaaata ttaggcacca gctgtcaaag
    17941 acactatacc tctccccact aatgtcccct caccccattc acaacatttg ggctcacatg
    18001 tcagcagcct gggtgcctaa cacagtacca ggccagtggt aggggtcacc ttccatttct
    18061 gttgaaagga tgggtaggta gatggtcaaa taacaaaatt gtaacccaat gcaagcgacg
    18121 gttgtttata acctttacta agagattgta ttttgttcct aattaacctg ttaacagttg
    18181 ttgtatctca cggacttttg tatgatgtgt gttgtttgaa aaccaggact cttgcctctg
    18241 gtgtcactcg atggaacttt cgctgtgcga ttaacgagtc agtgttttgt gttagaaatg
    18301 agaatctggg gggcgcttaa ctaactgtgt ggtgttgggc aagtcactcc tccttcctct
    18361 ctgaccctcg gtctcctttt ctctaagccg tgggtcacca gaaagcttac tacctcacag
    18421 ggttgttgtg agggcccagg gctgctaatg aaatgctggc tgtcactgag aatggtcgcg
    18481 tgttgggggc tgtctggaag ggaacaggga agcctttcct agttccaagt gaataaaaag
    18541 tcagccttga tcttatgcta agattggatt tccaccagtc agtgggatgt gtaaggcaga
    18601 ggcccagcag tttgctggcg tgtagcgatg tgggcccagg gtaaatattg gtttggttca
    18661 tgagtgatgg ctctttccct tcctcggagc ctgccttcct ctcccctcgc atcctgagct
    18721 gcttcttgtc gcgtgcaggg tgactgctct gggtttgccc tacctgtcgc tgcctggtcc
    18781 gtggaggggc ttctgcagac atctgtgggt gccccggggt gtttcttagg gaggaaggcg
    18841 gggggacagt ttcgagagag cccgagcagg ttcctgggta acatctttag ggactaaaac
    18901 actttcttct gccttttaag ggagaggccc gtgctcctaa tttcctccac ccccttcctt
    18961 ctttccctga ctgtaaggta aataaatgag tcttcagccc cctccatggg cctggaacca
    19021 aacttggggc tgttccacgc ccacgagctc cctgcttgat tggcgtgtgg gcccatttta
    19081 cagataagca agttgagaat tggggaccgc ggagcgtcag agccaggact gaacagtctt
    19141 ccatgaaaag ccgtggggca ctctttccac ttggccagac aagccctccc ggttaccgtg
    19201 gccagcctct gtcagcccaa atgtgcccca gtgtgtctct gtccccatca cgtgcctggc
    19261 agtgctcccg tggaggtcac gctctccaga gctctgccct gctctggagg aagtcccagg
    19321 aggcacccct gcaggggtca ttttggatcg ggggtctcca cgtgaccacg gaattccttt
    19381 cctggccctt gtctcacgtg tgtgggacat cagtgttctg ctagaacatc ccagattcca
    19441 tcccaggtgg gcttgagctg gggatcttgt tgagtccctc cctcccggcc cctccctctg
    19501 tggaagcctc accaccctcc tggtttggcc tctgcctttc acagctgcag tgggctctgt
    19561 ctgcaccacg gccaccccat gtccttgaga acttgtccga agctcccgag gggcgggccc
    19621 cactgtaggg acaggttggt agggtcctcc tctcagtaga ctgtgggcct gtgtgtaggt
    19681 gtctgctccc tgatggacct cggtcctgtg tgacccaggg ggagggactt tctcaggtgc
    19741 ctggtgtttt cagggccttg tcctcttgag gggggcaggc ctgggtccct gcctctggag
    19801 ggcaggtagg gagtcgaagc tcagtgaggt cgtgtctaag cagctcttag accccctccc
    19861 tgaccctgag acctacgctt ctctgaccct acaccccctc cctgaccctg agacctatgc
    19921 ttctctgacc ctacctaaca gccctgctgt ctgcactagt aggtgcctaa taggcgctcg
    19981 ctgactggta aggcagggtt ttagtggatg tgaaaagccg aattgactgt tggctgatgt
    20041 acacgttgaa tctgcatgcg tttctgtaag agaaaaaggt gtgttttctt ggcaaagact
    20101 cttcagggca aagcctgagg gtcttttgtc tgagccgggg gctcacccca gggggcggcc
    20161 gccggacaga ccatcctgat ggaaatagct gtcttctgaa cattgttgga aatatttatg
    20221 tctagaataa aactttattt gggctaaaat gtactcctat gtgtagtggt ccaagtgatt
    20281 ttttttatta agtacagtcg atttacaatg ttgtgttcat ttcttctgta cagcaaagtg
    20341 actcacgtgt acatatatat gttctttttc atattctttt ccattatggt ttatcacagg
    20401 ctattgacca tagttccctg tgctgtacag tgggtggtcc aagtgatttt gatgacgtgg
    20461 cattcggcaa ttcccaagtg ggaggtgtcc tggccccgcc catgccctct ctgggcctcg
    20521 ggagccctcg ccttggggag gggaggtctt ttacctgaaa agtctttgtc tgtcctcacc
    20581 attggtgaca atcagcatta acctgtaagg cacatgccca gtctgggatg cagccctggt
    20641 cagccagcag atgagggggg gatcggaccc cagaccttga ttcctttctc ctcctctcgc
    20701 cctcctctcc accccctcaa gctgaggggc ggacacttac ccatttgagt tctggttctg
    20761 gcatcaccat ttgccagctt agtggccttg ggagggttac ttggaccacc ccgagccttg
    20821 gttttcaccc ctgtagaatg ggtacatagt gacagtgtcc gctctggggt tgctggctca
    20881 gtgccttgct gcactccata tatactggct ctgagatcaa ggtctggggc tcgaagccac
    20941 ctaagcacct ttatgtgtgt gtggcctgga tgagtttgct cacctgtaat ccggaaatag
    21001 tcacatctac ctggcgtggt tactgtcgga ttcaatgaga ttgttcacgt gaaaataaat
    21061 gcttcgttac ccggcctccc agttggggct ggccacagca ccctgcagcc tgtgggtcct
    21121 ggtcgcggaa gccctgggct ttctggaact gccaaaaggg ggctgcaggg tggagtggag
    21181 ggcgtcaggg gagcacccgg ccagctttgg agggcagcga gggaaggaag ggtttgcttt
    21241 tcagtacaga gatggagcag cttcagaggg gacgggattg aggtccaagt gggcaggatc
    21301 agggagaagt tttagaaaga ggaggaagct gatagtttag aaaacaccca agtttaattg
    21361 gcaatgggtt ggacaggaga gctggggtgg gttttagcaa ggccaagcat cctagatttg
    21421 ggttagtgag tggaggacca tcagaggttc ctggtgcagg ggggtgtgat gcttctggaa
    21481 ctctctccgg gagggggaga ccaggtgtgg ggtgccagag ctgaggggcg gcaggtagag
    21541 ggcaggggct agtggctggg tgctcacctc gcccccatgg ctgctggggg ccagggccct
    21601 ctccccgtgt ggtccaggcc cctgagcgac ccgtctccta accctctctc tgctccttgc
    21661 ctccaacgtg cctgtgtgca tgagaactcg tgtccgccag tgagcccagg agcgggtggc
    21721 cttcatcagc acctgtgtct ctctcagcct ccacagccac ggggatacct gcacgcgttc
    21781 ccgtgggaca ggccggaccc aaagactctg gacccgggcc actcccctgc atggacgggc
    21841 gcgtccaccc cgcctccccg ccctctgact gatggacttc actgatctga gtgtcagaca
    21901 cgcgggctgg acccctcccc acccctcacg aaccctgaga
//
LOCUS       XM_032620280           15726 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X5, mRNA.
ACCESSION   XM_032620280
VERSION     XM_032620280.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15726
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15726
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 110 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     CDS             5967..7109
                     /gene="LOC116747726"
                     /codon_start=1
                     /product="uncharacterized protein LOC116747726"
                     /protein_id="XP_032476171.1"
                     /db_xref="GeneID:116747726"
                     /translation="MNERMSDWKKWTNDWKEVREEGRKEGRRERRKKEGRNSRQRGRE
                     DSSSLGSLGSRQPKGVGTREAWLLACCVLVTCTFLAGGAGSGGPLPWSATVTPWLWGP
                     FHFIALILSFPICKLGMASAPRLDGSWGRCCPACWQCPVGRAQAPGPAEGCGNWTWVT
                     CEGGFSRQGAAEGQGAGDPGGCVGPAGCAVLGGAPLTSRACAGGLGRGPVGARSPEIV
                     FPQLSEMCPGAHQPGLLRGRLPSLLESGGPGAGASQPGVCRSGPRIPAPLPWHPQSRF
                     QGLAVFSTVFRCTLCISAESAFALCVVELVLSPPDLPSPAPPAPPAGVGGCLYWRFRP
                     QGRPGSVQSPFSVPDRICALVCCVPVFVSKNEDQRPSGLLDSYLGH"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccagcta agcttctcga aaggcctgtc tacacttgct
      961 gtcttccttc ctcacctcca gtttcctctc caacccactg cttcctgacc tcttctactc
     1021 cgctcatcgg ctgtcactaa ggtcagcccg tcctcgacac cctggcggcg acagtcggct
     1081 gaagaactgg acggaagagg caggagagtt gccctggacc agcgctcctt cagaacggtc
     1141 acctggcatc tcatgcccac ctggtgcccc gtgactccct cctggtttgg gctgaagccg
     1201 tctcgaatcc tccgtgggac aggaccgtgg acacgcaacc ccagtaccct ccagctccaa
     1261 aatcggcaga ctaggatgga agtggcctag ctggggggcc cttcaaaggg ccaaggagaa
     1321 aacgcgggcc aagagaccag cctctcaaac gggcttcgag ctgcagtgac cttcacttac
     1381 cttccccccc ttgaaatgtc tggaaaacgg aatggacaga ttttctgtct tcaaagtttc
     1441 cggctaaacc tcttcaagtt ctttattgtt tgggactgag acactcagca atggtaatgg
     1501 gtagttcctt ttgtatttgc cttgaaaggc caaaatattt ttatatggct acagacaaag
     1561 ccatctgttt taagatgaac tctatgtccg tcgtttccca ccggggagat cgtgtatacc
     1621 gtgtgtgtct ctgtgcactc ctgggtcttg aaacaggttt ctcatgggga tggccattca
     1681 caggggtcca cggggaagca cctgccccac caagggggcc tggggactct gaccctcatc
     1741 tgtgtaggat gtgacccccg ggggggcggc gggtgttctg gctgcactaa catgtactct
     1801 gcctgtgcct gcatccgcca tgcatatgtg tcaaggactg tgggttgtgt gcaccttggt
     1861 gggaagaagc tggaaggtca aatatactgt gaatgttcta ttgttctggt cgggaggtca
     1921 ttttgctggg ttctgttacc tggtccaaat aagtgaatgg atgaataaac gaatgaaggc
     1981 gtgaaagagt gaagaaacta ataaataggt aaagaagcgt accctgaagg agatccaatt
     2041 tgaggcacag gagctcgata gataagtcaa taaagcattg aatcagtata taaacagggc
     2101 caggcaggaa ccgatgtcag gtcatcgtgg actaagggaa cacgtacaat tcaagtatgt
     2161 agcgcctaaa gtttgtccat aaaagaataa agcctagatg aaagaatgaa taagaagtcg
     2221 agaggcataa accagtagtg agggtgagat tatgcggccc atcaaagtga aaagatgcaa
     2281 gagaaagggc acggacggtt gaaaggaaga agaaaaacgg aaagacgcaa aataataact
     2341 aagcaggaag atcactttta aaattagggg gtgagaaaat atataaggag gactatgtca
     2401 ggttattaag agccaagcat taggattagt ccagatacat gctccagcca tagaaaaaaa
     2461 agagaaacaa cagaggaaga gttcaaaagg tagttaaaac cgaaaaagga cccaggggac
     2521 cagaggtgag agttaacttt aaccaaattt tttctaactc tgggcacaca taaataaata
     2581 aacactgaaa agaaagaaag ccaaaaaaag aaaaaaaaag gagaaaggaa aggatgggat
     2641 gaataagtag tggacgtacg tggacccaga tgggagcgtg gcaggagggg tttcgagtca
     2701 tccagtcctg ggacctgagg tctgttccac gaaaggacta aaaaagagag agaacaaaat
     2761 aaagcatcta aataaaaacc aagaaatatg gaagaaaaag taacaagtgt tcagtccagg
     2821 aatacattag tgggtgaata aataaacata taaaagaagg tggtgctagg agtcgaggtg
     2881 caggagactg tcatgaatca aggttggtcc agttctaaaa gccgcagtac tatcagaaca
     2941 taataagcat ctccataaac aagtgaatga gcatctaaag aaacaaagac acgatgaagt
     3001 gaggcaggga ggggccatgg ccacaggcac tcctgagggg cctgttggaa ggttgtaatt
     3061 aatcttcgcc actgtctggg caccaaagat ccgggaggag gaaagaagac agacgagaaa
     3121 ggaggagatt tggaaagctg caacgaaaga gagaaagaaa gagttaagag gtggtaaatg
     3181 ggtatattct tggaagaggg ttaggctaag agtggtaaaa aaggaccagc cccaactgta
     3241 gatcacaatg ggtcaaaatc tgggcactcg ttccgttagt agaggagtgt atacctaata
     3301 agaagagaaa cacagcagga aggaagaatg gtatgaagga atgaaggaag gaaggaagga
     3361 acgagacgtg gagaggcagg gccccaggat gccgtttgca ggtaacgtta taggattcat
     3421 cacttcatgg cacctgagcg ccgacgaatg aaagaatgca agaaagaaag agtgagagag
     3481 cgaaagagag aaacagtgaa aatgggagag aaatgataaa tcagagacta aattagaaat
     3541 gaaaaaggaa aaaaggagaa aggtaatata ttaacagaca gatagataaa tacatatata
     3601 ggagagagca gctctaggag taagaatgag aggggggcct gaaccaagca cagtgacgaa
     3661 ttcacatctg ggcttctgag atgggccgcc acctacccaa ccaggaggca gttcaaagct
     3721 gaaatgcata agggaggacc tcagtgaggc cagggagggg aaggcccact gcttgtagat
     3781 tatcatgtat ccagttaggt gcccctgcca gccagaagtg tagaaacaat caccaaaaag
     3841 aaagaaaacc tgaatggatg cacaaatgcg tgaatgcaag agtgagtgag aaaaaagatt
     3901 tgcagtgacc aaggaggccg gtcttgcagg ggtgttagga ttcatccagt ccctggtgcc
     3961 tgatctccaa gagaaggaaa ggcggtaaaa aaagaaaggc tgagagactg gtagaaaaaa
     4021 aatttgagat tggagaaaaa aataaaacaa tttaaaaaag gagtaaagaa ggtaataaat
     4081 tagcaagcca tgcagtgaag tctgtgagaa gggactggtt tagcacagac catccacatt
     4141 aattcaaatc tccggccccg aagttgataa acaataaaaa caatcacata aataaatgcc
     4201 tgaagggata aattcacacg ttccatgaga atgtgagaaa aagtttgaaa aattatagga
     4261 gggactggga gaaagaaaga tgaaagaaaa gaaaagaaaa gagacctatg gaagaagagg
     4321 cacttcctgg ataagtactt acatataata aacaaatatt attcattaaa tacaataatt
     4381 agtaagagct gaggttcatc ataaagaaag aataagtaga ggcatggctg tgtgaacaaa
     4441 tgaatgagaa ggatgatttt gattaattca cgtctgcacc cgaggctcac gggaataaaa
     4501 gaatgcaaaa aagagagcgg tgaaggaggg gcgtagacaa ttatgacagg atggatatta
     4561 gcaacaaaaa catattgaag gaataaatca atacgtacat aattctacga gagagagggc
     4621 catgttagaa caaaaaaacg agatggcacc gcgagccagg aattatgact gattcaaaac
     4681 tgggctcttg agatagttaa ataaagcctc aaccaaatca ccagtatgag gaattaacaa
     4741 acaaaagcga gccccacatg gaccggtgct gagaaggctc caggaaccac agattatggt
     4801 taatccaatt ctgtgcacct gaggtccata aataaaagaa taaatattga aataaaagag
     4861 tgacagaaag aatgaatgga cccatgaaca actgaattag aaatggaaat gcctggaacg
     4921 gccaggagtg cgttgcccat gggattgtca ctcatctcac tccggacacc tgaggttcct
     4981 aagagtgaaa agatgcaaga aaaaaaacaa caaaaaaacc catcagggag tcaaagaaag
     5041 aggtgaggga aggcaaagtg aaacaaagtg aaagagaaag gcggggtggg ggagggacta
     5101 ataaaaagct aacgaagata tgggtgtgtc tgagaggagg atgtgttagg attagggatg
     5161 aggtcatcat caatcctaat gatggatgag atcatccaat cccccttttt agggcaaggg
     5221 aggatggaga gatgaaaaaa aaaagaagtg aaaaaaggag aaaggaagga tgataaacct
     5281 ccaaccaagg tgataaatgg ttagttaaaa gagaggttgt ctgagcaggg attataatta
     5341 gtttacatac gtactcctta aatagataaa tacatcacac ctttccaaga ataaatgaaa
     5401 aatagaggaa atacccgacc caaagacaag gctgcatctt ccaacctttt atcatcttta
     5461 tgtaataaaa tatatgcaat tgaggtccat aaataaaaga ataaatagca aagtgtaaaa
     5521 ggtgactaaa ggcgaggaag aaagatagca aaggcaaata aacacatggg ccaacgatgg
     5581 ttattttgca catgcagttt tgactaatac agttatttcc caggagactg gtaagtaaaa
     5641 gaatacccaa aataagaaag aaaggaaggg caaatgcacg agtgcataag tgaatgaatg
     5701 aatgagtgag aggtggtgct gcctggacca gggacaggag gatgtcgctc gcgggagcct
     5761 gatttatcct tctgtgcacc tgagtttgta agaatgaagg aacggaagga agagtgagag
     5821 aaagggagaa atacaaaaga aaggaataag gaatcaaaat aatgtataaa cgaataaata
     5881 ggagaaggga gagcttcatg aacgaggggc tgtgattaat cgaaagtcgt gctgttgaag
     5941 tcggtaaata aaggcgtcaa atctaaatga atgaacgaat gagtgactgg aagaaatgga
     6001 cgaatgactg gaaggaagtg agggaggaag gaaggaagga gggaaggagg gaaagaagga
     6061 aaaaggaagg aagaaatagt aggcagagag ggagggagga ctcttccagt ttggggtccc
     6121 tgggttcccg ccagccgaag ggagtgggta ccagggaggc gtggctcttg gcatgttgtg
     6181 tgcttgttac ctgcactttc ttggcgggag gagctggctc aggaggaccc ttgccttgga
     6241 gcgccactgt cacaccctgg ctgtgggggc catttcactt cattgctctc attctcagtt
     6301 tccccatctg taaactcgga atggcatcag ctccccgctt ggacggatcg tggggcagat
     6361 gctgtcctgc gtgttggcag tgccccgtcg gaagggctca ggccccgggc cctgccgaag
     6421 gttgtgggaa ctggacgtgg gtcacctgcg agggaggctt ttcccgccag ggggcagcag
     6481 agggtcaggg agcaggagac cctgggggct gtgtgggccc cgccggctgc gctgtcctgg
     6541 gaggggcgcc actcacatcc agggcctgtg caggtggctt gggaaggggg ccagtagggg
     6601 ccagatcacc agaaatcgtg ttcccgcaac tttccgaaat gtgcccggga gcccaccagc
     6661 ccggtcttct acggggtagg ctgccttccc ttctcgagtc agggggtccc ggggcaggtg
     6721 cctctcagcc cggggtttgc agaagtggtc ccaggatccc ggcccccttg ccttggcatc
     6781 cccagagccg gtttcaaggc cttgctgtct tctcgactgt tttccgatgt actctctgta
     6841 tttcggcgga aagcgcgttt gcactgtgtg ttgttgaact tgtcctctcc cctcctgacc
     6901 tgccttcccc cgcccccccc gccccccccg ccggggttgg gggctgtttg tactggcgct
     6961 tccgacccca gggacgccct ggttctgtgc agtctccttt ctctgtaccg gacaggattt
     7021 gtgcacttgt gtgttgtgtg cctgtgtttg tctctaaaaa tgaggaccag aggccctctg
     7081 gacttctcga ttcctatttg ggacattaaa aaaaaaaact ggattcctaa caagcgccct
     7141 gaacaggagg agccagcttg gctggaccca ggatccgtgg ctgggagagc ggggagcgca
     7201 gtgggggtcg ggtgcggctg gggctagcgt tttgcctggt gggtgggagg tgccatgtgt
     7261 ctgggccacg tgagcagggc ctcgtgggcc tgaggtggtg ctggggcttc agggctctgc
     7321 acgcttatta accctgaaga cacctgctca gagagggtct ccagagagcc ccccaaacag
     7381 cccaggtgtc attgtgtgga ccagagtggg ggtggcaggg acttggcgca ggaagagcct
     7441 gggagggtct ttttggagaa cgcttgtgtg gctttaaaag tcagctgagg gtcgagaaga
     7501 cttagaaagt attggggaga agttgggggc cacggccatg tgcacagagg aaatagggag
     7561 ggacaggaga gcaaacctct cggggagcct tctccccagg tccaaagggc tgtcgagggg
     7621 gtcacgtgga tggaaatggg ctgatgggag aatgccccag gggggagggt gggttgggat
     7681 tggatgagtt ctgtctgttt aggaatattg agggcctgag ggtcatcggg tcagagctct
     7741 taagagcttg ggatccagca ttctaagggt ctccagttct gagatgctga gtttcaggac
     7801 agggcttgag ggctgtagaa gccgggggtg gaatttccac atgggccccc atctggttct
     7861 gtccacgctc gatccatgag gtccaagatg ggatctcagc actcctctct gatcagggct
     7921 tatctcaagt gtgtgtttct tcttctcact ctttgaaaaa aagacaaatt ttgtctgttg
     7981 actttgacct ttgcatgcac cccttgcaca aatccttccc ctggtgacac caggagctac
     8041 aagtctcctt ggatttctgt acaactccca actccctcct caggaagctt ggcctcgggg
     8101 ctggccttcc agagggtgga ggacggaggc tgggcctctg gggcagatgg gccaagggct
     8161 cccctgtgat cctaatgtaa acggtgtgga tagcacatga cctagagcag gagatcaccc
     8221 atcattcgac atgtcacccg tttttatttc ttcccttccg attcctgttt acgagcacac
     8281 tttttttaat ggacatctga ttttttaaat gagcgttcat tttttaaacc taattgccat
     8341 tcttcaccac atacacttct ttttttttta catcttgcct tttccactta atattccatc
     8401 gtcaacattt ttcttccttc catagacttc gtcacatcac tggctgcctt gtgtctcatt
     8461 gagaggctat gtcaatcatt cacatcaacc tgctattgtt actattgcta ggcataattc
     8521 atcttttttt tttaatgtta cagattatgc cacagctaat ggcttagcac acccactttt
     8581 tttttttcat tcttaccaat tatcttccca cacctagaaa tgatcatggt atgtcagttt
     8641 catggtatgt cagtttctcc tgctaggctg tgagcccctt aagggcaaga agcttgttga
     8701 attgatcttt gtatctctaa tgcctgaaat gttgtagatg ctaaatgtta gatgcgagga
     8761 tggaaggatg gatgaagatg tgagtgagtg agtggttggt tggctgttag aggagaggag
     8821 ggaaggatgg gtgaataaaa ggattggtga atgaacaaat gaacttctta gggttgagtc
     8881 tgttgaatga aaggccggga atttttgtat ggatattgac taatagcgga aggcttacag
     8941 cattttataa cgtccagcga tgtattagca ttttgttatg atattgctag tttatctctg
     9001 ttaaaaagtg ttttctgtca ttttaacttg cattgctttg attactaatg acggttgaac
     9061 attttcacgt gtgtttgtta aaaatttgca ttttatcttc tgtgaactgt ttgtccaagt
     9121 ccaccgggtc atggctttgt gatgagactg tcaaggatgg aacgagtgtc ctcaggacgt
     9181 agtgagccct tcctcactgg aggcattcaa ggggcaggcc aggcagatac ccgatgaggg
     9241 tggctttaag gagattcaat tagtgggagt ggggttggcc tagatgaccc ttcatttgac
     9301 tttaggattt tgcttcttcc tgggaaatgg gcatattccc tctgtcagcc cagcagtatc
     9361 taaggccacg tccccctggt gggcttgtgc attagtggtt tatgaactcc aacctcatcc
     9421 tctataactc ttgtggggca ggaatatctc tttgaccctc caggctccag agagctgtgc
     9481 taccgtcttg tagagttcag tggtggactt cccacccgcc cccctccccc atttcacctc
     9541 gaggaggaca ggcccctgca cctccacttg ccacctctca gcgcaatcag ctgaggcgat
     9601 cagctgccgt ttacgttccc ggggtcctgt gagcagatgt cccctaggcc tgcgtgttgg
     9661 tctttggggt ttaattgatt aaggggacat gtcggatcag gtctgataat gaatcctcct
     9721 tcagaaatgg gacagttcaa ttccgtgagc tgaggagcag aagggacccc atgttctcct
     9781 cgggcttccc ctcacggccc accccaaggc tagccggggc tcaaaggtca ccgtggccat
     9841 tcggggaggg cgcgtgaccc aaggagggct tgcccctgcg ttccagaaca cgctctgctc
     9901 tcagctaagg gccgcatctt cccgccgacc ctctaatata gcaccgagtg ctgtttgcct
     9961 gtattggaat tcctcaccca cgtgtttgcc ccagcatcga agctcgggag gccagtgatg
    10021 cttcccgaca tgatttcgat ccatccatcc atccatgcat ttggcctacg tctcctgacc
    10081 tggcgctttg gtctttccct ttcctgaaag caaacctttt cctcttgggc aggctgtgta
    10141 gtgccatggg ctgtggttat gaagtgaacg cccttatttg tggcttctcc ctccggggtc
    10201 actgctctga gcacgtccca gctggatgtc atctgccacc gtcacccaca cggcttcctt
    10261 ccccgtggcg ctttcccatg catcacacac cgtgagggaa ccaaggccgg ggtccgagag
    10321 cggcccccct cccccgcccg tgagcggaga tgtcccccca cctaggccac cctgcctggt
    10381 gcatggtccc tgtcatgagc tttgccctca gcctcctccc accagatggc agtggttgta
    10441 actcatccct tcattctttc gttcactcag tccacaaacg tttgaaaaga tccgccggtg
    10501 ctatactaga gctggctcac aggacacgtt ccaaccatcc cctttccaag gaaaagatga
    10561 gcatgtttgc caggggccat gtttgtgtgt cagtaacaag gcggggccat tgatttagct
    10621 cccaccccta gacccgagtt ctgttgaaag tttggtagcc ctctccaact ttgttcctcc
    10681 ccaaactgtt gattagtaac cggcaaactg tgtttcttgg tgctcagaaa tcatagcctg
    10741 tagcctccag aggccagaat gagagctggg gggtctgaaa cgaaaggctg attctgcccg
    10801 tgagcaggct ttcaagtcat tagaacaccc tgatctcgca caaaggggac cttagagtca
    10861 ttcctgtccc tttgagattt gctaattctg ggctctattt agagaaaatt ggggaaggtg
    10921 attgcttgct tggatggcaa ggatcgtgcc ccatgcgggg tctgcacaga acaatctttc
    10981 cgaggcacac agcgcttggc gaaccctgga tgcagccccc agcatccatg caggtcccag
    11041 gccaggcggc atccacccca cccccgcccc cgcccccccg ccaactccaa cttagctcac
    11101 tgctacctgc ttgggacaag gcgtagatct aggggctcta ctgagaattc tgtatttgct
    11161 ttatcgcctt ggacagtggg ggtggtggac aaagccagga ccctggagct ggacaaacgt
    11221 gcggtttaaa cagatggcga cagcttgagt ctgtctcctg gtgataccat ggcacaccca
    11281 cctcgcaggg ctgttgtgag gcttgatgta actaggatct tgaactgcga ttctgaaagg
    11341 gtgtgcgcgt gcccccaggg gtgggttggg ggtgggttga caggccagga ggggcagcct
    11401 gattcgggca ggttagtggg aaatcttttt gtcaaacatg cagtgggtat tgtgggaacg
    11461 aacgctaaat ttgtatggcg ttcgaaggtt agatggttgt aatttgggca ggaaccttca
    11521 tgctgggtac tgacgacccc tttgggcaat gccctggacc ccctggggta cgcgttcaca
    11581 cctgtctccg gaatcggaat cggttggaag gccccatctg tgtcttgcct accgctgtgt
    11641 ctggcctgtg ggcggcactt atcctccacg agagacccct cccagcagtg tcctcccccc
    11701 aaaatattag gcaccagctg tcaaagacac tatacctctc cccactaatg tcccctcacc
    11761 ccattcacaa catttgggct cacatgtcag cagcctgggt gcctaacaca gtaccaggcc
    11821 agtggtaggg gtcaccttcc atttctgttg aaaggatggg taggtagatg gtcaaataac
    11881 aaaattgtaa cccaatgcaa gcgacggttg tttataacct ttactaagag attgtatttt
    11941 gttcctaatt aacctgttaa cagttgttgt atctcacgga cttttgtatg atgtgtgttg
    12001 tttgaaaacc aggactcttg cctctggtgt cactcgatgg aactttcgct gtgcgattaa
    12061 cgagtcagtg ttttgtgtta gaaatgagaa tctggggggc gcttaactaa ctgtgtggtg
    12121 ttgggcaagt cactcctcct tcctctctga ccctcggtct ccttttctct aagccgtggg
    12181 tcaccagaaa gcttactacc tcacagggtt gttgtgaggg cccagggctg ctaatgaaat
    12241 gctggctgtc actgagaatg gtcgcgtgtt gggggctgtc tggaagggaa cagggaagcc
    12301 tttcctagtt ccaagtgaat aaaaagtcag ccttgatctt atgctaagat tggatttcca
    12361 ccagtcagtg ggatgtgtaa ggcagaggcc cagcagtttg ctggcgtgta gcgatgtggg
    12421 cccagggtaa atattggttt ggttcatgag tgatggctct ttcccttcct cggagcctgc
    12481 cttcctctcc cctcgcatcc tgagctgctt cttgtcgcgt gcagggtgac tgctctgggt
    12541 ttgccctacc tgtcgctgcc tggtccgtgg aggggcttct gcagacatct gtgggtgccc
    12601 cggggtgttt cttagggagg aaggcggggg gacagtttcg agagagcccg agcaggttcc
    12661 tgggtaacat ctttagggac taaaacactt tcttctgcct tttaagggag aggcccgtgc
    12721 tcctaatttc ctccaccccc ttccttcttt ccctgactgt aaggtaaata aatgagtctt
    12781 cagccccctc catgggcctg gaaccaaact tggggctgtt ccacgcccac gagctccctg
    12841 cttgattggc gtgtgggccc attttacaga taagcaagtt gagaattggg gaccgcggag
    12901 cgtcagagcc aggactgaac agtcttccat gaaaagccgt ggggcactct ttccacttgg
    12961 ccagacaagc cctcccggtt accgtggcca gcctctgtca gcccaaatgt gccccagtgt
    13021 gtctctgtcc ccatcacgtg cctggcagtg ctcccgtgga ggtcacgctc tccagagctc
    13081 tgccctgctc tggaggaagt cccaggaggc acccctgcag gggtcatttt ggatcggggg
    13141 tctccacgtg accacggaat tcctttcctg gcccttgtct cacgtgtgtg ggacatcagt
    13201 gttctgctag aacatcccag attccatccc aggtgggctt gagctgggga tcttgttgag
    13261 tccctccctc ccggcccctc cctctgtgga agcctcacca ccctcctggt ttggcctctg
    13321 cctttcacag ctgcagtggg ctctgtctgc accacggcca ccccatgtcc ttgagaactt
    13381 gtccgaagct cccgaggggc gggccccact gtagggacag gttggtaggg tcctcctctc
    13441 agtagactgt gggcctgtgt gtaggtgtct gctccctgat ggacctcggt cctgtgtgac
    13501 ccagggggag ggactttctc aggtgcctgg tgttttcagg gccttgtcct cttgaggggg
    13561 gcaggcctgg gtccctgcct ctggagggca ggtagggagt cgaagctcag tgaggtcgtg
    13621 tctaagcagc tcttagaccc cctccctgac cctgagacct acgcttctct gaccctacac
    13681 cccctccctg accctgagac ctatgcttct ctgaccctac ctaacagccc tgctgtctgc
    13741 actagtaggt gcctaatagg cgctcgctga ctggtaaggc agggttttag tggatgtgaa
    13801 aagccgaatt gactgttggc tgatgtacac gttgaatctg catgcgtttc tgtaagagaa
    13861 aaaggtgtgt tttcttggca aagactcttc agggcaaagc ctgagggtct tttgtctgag
    13921 ccgggggctc accccagggg gcggccgccg gacagaccat cctgatggaa atagctgtct
    13981 tctgaacatt gttggaaata tttatgtcta gaataaaact ttatttgggc taaaatgtac
    14041 tcctatgtgt agtggtccaa gtgatttttt ttattaagta cagtcgattt acaatgttgt
    14101 gttcatttct tctgtacagc aaagtgactc acgtgtacat atatatgttc tttttcatat
    14161 tcttttccat tatggtttat cacaggctat tgaccatagt tccctgtgct gtacagtggg
    14221 tggtccaagt gattttgatg acgtggcatt cggcaattcc caagtgggag gtgtcctggc
    14281 cccgcccatg ccctctctgg gcctcgggag ccctcgcctt ggggagggga ggtcttttac
    14341 ctgaaaagtc tttgtctgtc ctcaccattg gtgacaatca gcattaacct gtaaggcaca
    14401 tgcccagtct gggatgcagc cctggtcagc cagcagatga gggggggatc ggaccccaga
    14461 ccttgattcc tttctcctcc tctcgccctc ctctccaccc cctcaagctg aggggcggac
    14521 acttacccat ttgagttctg gttctggcat caccatttgc cagcttagtg gccttgggag
    14581 ggttacttgg accaccccga gccttggttt tcacccctgt agaatgggta catagtgaca
    14641 gtgtccgctc tggggttgct ggctcagtgc cttgctgcac tccatatata ctggctctga
    14701 gatcaaggtc tggggctcga agccacctaa gcacctttat gtgtgtgtgg cctggatgag
    14761 tttgctcacc tgtaatccgg aaatagtcac atctacctgg cgtggttact gtcggattca
    14821 atgagattgt tcacgtgaaa ataaatgctt cgttacccgg cctcccagtt ggggctggcc
    14881 acagcaccct gcagcctgtg ggtcctggtc gcggaagccc tgggctttct ggaactgcca
    14941 aaagggggct gcagggtgga gtggagggcg tcaggggagc acccggccag ctttggaggg
    15001 cagcgaggga aggaagggtt tgcttttcag tacagagatg gagcagcttc agaggggacg
    15061 ggattgaggt ccaagtgggc aggatcaggg agaagtttta gaaagaggag gaagctgata
    15121 gtttagaaaa cacccaagtt taattggcaa tgggttggac aggagagctg gggtgggttt
    15181 tagcaaggcc aagcatccta gatttgggtt agtgagtgga ggaccatcag aggttcctgg
    15241 tgcagggggg tgtgatgctt ctggaactct ctccgggagg gggagaccag gtgtggggtg
    15301 ccagagctga ggggcggcag gtagagggca ggggctagtg gctgggtgct cacctcgccc
    15361 ccatggctgc tgggggccag ggccctctcc ccgtgtggtc caggcccctg agcgacccgt
    15421 ctcctaaccc tctctctgct ccttgcctcc aacgtgcctg tgtgcatgag aactcgtgtc
    15481 cgccagtgag cccaggagcg ggtggccttc atcagcacct gtgtctctct cagcctccac
    15541 agccacgggg atacctgcac gcgttcccgt gggacaggcc ggacccaaag actctggacc
    15601 cgggccactc ccctgcatgg acgggcgcgt ccaccccgcc tccccgccct ctgactgatg
    15661 gacttcactg atctgagtgt cagacacgcg ggctggaccc ctccccaccc ctcacgaacc
    15721 ctgaga
//
LOCUS       XM_032620285           15612 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X6, mRNA.
ACCESSION   XM_032620285
VERSION     XM_032620285.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15612
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15612
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 111 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     CDS             5853..6995
                     /gene="LOC116747726"
                     /codon_start=1
                     /product="uncharacterized protein LOC116747726"
                     /protein_id="XP_032476176.1"
                     /db_xref="GeneID:116747726"
                     /translation="MNERMSDWKKWTNDWKEVREEGRKEGRRERRKKEGRNSRQRGRE
                     DSSSLGSLGSRQPKGVGTREAWLLACCVLVTCTFLAGGAGSGGPLPWSATVTPWLWGP
                     FHFIALILSFPICKLGMASAPRLDGSWGRCCPACWQCPVGRAQAPGPAEGCGNWTWVT
                     CEGGFSRQGAAEGQGAGDPGGCVGPAGCAVLGGAPLTSRACAGGLGRGPVGARSPEIV
                     FPQLSEMCPGAHQPGLLRGRLPSLLESGGPGAGASQPGVCRSGPRIPAPLPWHPQSRF
                     QGLAVFSTVFRCTLCISAESAFALCVVELVLSPPDLPSPAPPAPPAGVGGCLYWRFRP
                     QGRPGSVQSPFSVPDRICALVCCVPVFVSKNEDQRPSGLLDSYLGH"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccaggtc agcccgtcct cgacaccctg gcggcgacag
      961 tcggctgaag aactggacgg aagaggcagg agagttgccc tggaccagcg ctccttcaga
     1021 acggtcacct ggcatctcat gcccacctgg tgccccgtga ctccctcctg gtttgggctg
     1081 aagccgtctc gaatcctccg tgggacagga ccgtggacac gcaaccccag taccctccag
     1141 ctccaaaatc ggcagactag gatggaagtg gcctagctgg ggggcccttc aaagggccaa
     1201 ggagaaaacg cgggccaaga gaccagcctc tcaaacgggc ttcgagctgc agtgaccttc
     1261 acttaccttc ccccccttga aatgtctgga aaacggaatg gacagatttt ctgtcttcaa
     1321 agtttccggc taaacctctt caagttcttt attgtttggg actgagacac tcagcaatgg
     1381 taatgggtag ttccttttgt atttgccttg aaaggccaaa atatttttat atggctacag
     1441 acaaagccat ctgttttaag atgaactcta tgtccgtcgt ttcccaccgg ggagatcgtg
     1501 tataccgtgt gtgtctctgt gcactcctgg gtcttgaaac aggtttctca tggggatggc
     1561 cattcacagg ggtccacggg gaagcacctg ccccaccaag ggggcctggg gactctgacc
     1621 ctcatctgtg taggatgtga cccccggggg ggcggcgggt gttctggctg cactaacatg
     1681 tactctgcct gtgcctgcat ccgccatgca tatgtgtcaa ggactgtggg ttgtgtgcac
     1741 cttggtggga agaagctgga aggtcaaata tactgtgaat gttctattgt tctggtcggg
     1801 aggtcatttt gctgggttct gttacctggt ccaaataagt gaatggatga ataaacgaat
     1861 gaaggcgtga aagagtgaag aaactaataa ataggtaaag aagcgtaccc tgaaggagat
     1921 ccaatttgag gcacaggagc tcgatagata agtcaataaa gcattgaatc agtatataaa
     1981 cagggccagg caggaaccga tgtcaggtca tcgtggacta agggaacacg tacaattcaa
     2041 gtatgtagcg cctaaagttt gtccataaaa gaataaagcc tagatgaaag aatgaataag
     2101 aagtcgagag gcataaacca gtagtgaggg tgagattatg cggcccatca aagtgaaaag
     2161 atgcaagaga aagggcacgg acggttgaaa ggaagaagaa aaacggaaag acgcaaaata
     2221 ataactaagc aggaagatca cttttaaaat tagggggtga gaaaatatat aaggaggact
     2281 atgtcaggtt attaagagcc aagcattagg attagtccag atacatgctc cagccataga
     2341 aaaaaaagag aaacaacaga ggaagagttc aaaaggtagt taaaaccgaa aaaggaccca
     2401 ggggaccaga ggtgagagtt aactttaacc aaattttttc taactctggg cacacataaa
     2461 taaataaaca ctgaaaagaa agaaagccaa aaaaagaaaa aaaaaggaga aaggaaagga
     2521 tgggatgaat aagtagtgga cgtacgtgga cccagatggg agcgtggcag gaggggtttc
     2581 gagtcatcca gtcctgggac ctgaggtctg ttccacgaaa ggactaaaaa agagagagaa
     2641 caaaataaag catctaaata aaaaccaaga aatatggaag aaaaagtaac aagtgttcag
     2701 tccaggaata cattagtggg tgaataaata aacatataaa agaaggtggt gctaggagtc
     2761 gaggtgcagg agactgtcat gaatcaaggt tggtccagtt ctaaaagccg cagtactatc
     2821 agaacataat aagcatctcc ataaacaagt gaatgagcat ctaaagaaac aaagacacga
     2881 tgaagtgagg cagggagggg ccatggccac aggcactcct gaggggcctg ttggaaggtt
     2941 gtaattaatc ttcgccactg tctgggcacc aaagatccgg gaggaggaaa gaagacagac
     3001 gagaaaggag gagatttgga aagctgcaac gaaagagaga aagaaagagt taagaggtgg
     3061 taaatgggta tattcttgga agagggttag gctaagagtg gtaaaaaagg accagcccca
     3121 actgtagatc acaatgggtc aaaatctggg cactcgttcc gttagtagag gagtgtatac
     3181 ctaataagaa gagaaacaca gcaggaagga agaatggtat gaaggaatga aggaaggaag
     3241 gaaggaacga gacgtggaga ggcagggccc caggatgccg tttgcaggta acgttatagg
     3301 attcatcact tcatggcacc tgagcgccga cgaatgaaag aatgcaagaa agaaagagtg
     3361 agagagcgaa agagagaaac agtgaaaatg ggagagaaat gataaatcag agactaaatt
     3421 agaaatgaaa aaggaaaaaa ggagaaaggt aatatattaa cagacagata gataaataca
     3481 tatataggag agagcagctc taggagtaag aatgagaggg gggcctgaac caagcacagt
     3541 gacgaattca catctgggct tctgagatgg gccgccacct acccaaccag gaggcagttc
     3601 aaagctgaaa tgcataaggg aggacctcag tgaggccagg gaggggaagg cccactgctt
     3661 gtagattatc atgtatccag ttaggtgccc ctgccagcca gaagtgtaga aacaatcacc
     3721 aaaaagaaag aaaacctgaa tggatgcaca aatgcgtgaa tgcaagagtg agtgagaaaa
     3781 aagatttgca gtgaccaagg aggccggtct tgcaggggtg ttaggattca tccagtccct
     3841 ggtgcctgat ctccaagaga aggaaaggcg gtaaaaaaag aaaggctgag agactggtag
     3901 aaaaaaaatt tgagattgga gaaaaaaata aaacaattta aaaaaggagt aaagaaggta
     3961 ataaattagc aagccatgca gtgaagtctg tgagaaggga ctggtttagc acagaccatc
     4021 cacattaatt caaatctccg gccccgaagt tgataaacaa taaaaacaat cacataaata
     4081 aatgcctgaa gggataaatt cacacgttcc atgagaatgt gagaaaaagt ttgaaaaatt
     4141 ataggaggga ctgggagaaa gaaagatgaa agaaaagaaa agaaaagaga cctatggaag
     4201 aagaggcact tcctggataa gtacttacat ataataaaca aatattattc attaaataca
     4261 ataattagta agagctgagg ttcatcataa agaaagaata agtagaggca tggctgtgtg
     4321 aacaaatgaa tgagaaggat gattttgatt aattcacgtc tgcacccgag gctcacggga
     4381 ataaaagaat gcaaaaaaga gagcggtgaa ggaggggcgt agacaattat gacaggatgg
     4441 atattagcaa caaaaacata ttgaaggaat aaatcaatac gtacataatt ctacgagaga
     4501 gagggccatg ttagaacaaa aaaacgagat ggcaccgcga gccaggaatt atgactgatt
     4561 caaaactggg ctcttgagat agttaaataa agcctcaacc aaatcaccag tatgaggaat
     4621 taacaaacaa aagcgagccc cacatggacc ggtgctgaga aggctccagg aaccacagat
     4681 tatggttaat ccaattctgt gcacctgagg tccataaata aaagaataaa tattgaaata
     4741 aaagagtgac agaaagaatg aatggaccca tgaacaactg aattagaaat ggaaatgcct
     4801 ggaacggcca ggagtgcgtt gcccatggga ttgtcactca tctcactccg gacacctgag
     4861 gttcctaaga gtgaaaagat gcaagaaaaa aaacaacaaa aaaacccatc agggagtcaa
     4921 agaaagaggt gagggaaggc aaagtgaaac aaagtgaaag agaaaggcgg ggtgggggag
     4981 ggactaataa aaagctaacg aagatatggg tgtgtctgag aggaggatgt gttaggatta
     5041 gggatgaggt catcatcaat cctaatgatg gatgagatca tccaatcccc ctttttaggg
     5101 caagggagga tggagagatg aaaaaaaaaa gaagtgaaaa aaggagaaag gaaggatgat
     5161 aaacctccaa ccaaggtgat aaatggttag ttaaaagaga ggttgtctga gcagggatta
     5221 taattagttt acatacgtac tccttaaata gataaataca tcacaccttt ccaagaataa
     5281 atgaaaaata gaggaaatac ccgacccaaa gacaaggctg catcttccaa ccttttatca
     5341 tctttatgta ataaaatata tgcaattgag gtccataaat aaaagaataa atagcaaagt
     5401 gtaaaaggtg actaaaggcg aggaagaaag atagcaaagg caaataaaca catgggccaa
     5461 cgatggttat tttgcacatg cagttttgac taatacagtt atttcccagg agactggtaa
     5521 gtaaaagaat acccaaaata agaaagaaag gaagggcaaa tgcacgagtg cataagtgaa
     5581 tgaatgaatg agtgagaggt ggtgctgcct ggaccaggga caggaggatg tcgctcgcgg
     5641 gagcctgatt tatccttctg tgcacctgag tttgtaagaa tgaaggaacg gaaggaagag
     5701 tgagagaaag ggagaaatac aaaagaaagg aataaggaat caaaataatg tataaacgaa
     5761 taaataggag aagggagagc ttcatgaacg aggggctgtg attaatcgaa agtcgtgctg
     5821 ttgaagtcgg taaataaagg cgtcaaatct aaatgaatga acgaatgagt gactggaaga
     5881 aatggacgaa tgactggaag gaagtgaggg aggaaggaag gaaggaggga aggagggaaa
     5941 gaaggaaaaa ggaaggaaga aatagtaggc agagagggag ggaggactct tccagtttgg
     6001 ggtccctggg ttcccgccag ccgaagggag tgggtaccag ggaggcgtgg ctcttggcat
     6061 gttgtgtgct tgttacctgc actttcttgg cgggaggagc tggctcagga ggacccttgc
     6121 cttggagcgc cactgtcaca ccctggctgt gggggccatt tcacttcatt gctctcattc
     6181 tcagtttccc catctgtaaa ctcggaatgg catcagctcc ccgcttggac ggatcgtggg
     6241 gcagatgctg tcctgcgtgt tggcagtgcc ccgtcggaag ggctcaggcc ccgggccctg
     6301 ccgaaggttg tgggaactgg acgtgggtca cctgcgaggg aggcttttcc cgccaggggg
     6361 cagcagaggg tcagggagca ggagaccctg ggggctgtgt gggccccgcc ggctgcgctg
     6421 tcctgggagg ggcgccactc acatccaggg cctgtgcagg tggcttggga agggggccag
     6481 taggggccag atcaccagaa atcgtgttcc cgcaactttc cgaaatgtgc ccgggagccc
     6541 accagcccgg tcttctacgg ggtaggctgc cttcccttct cgagtcaggg ggtcccgggg
     6601 caggtgcctc tcagcccggg gtttgcagaa gtggtcccag gatcccggcc cccttgcctt
     6661 ggcatcccca gagccggttt caaggccttg ctgtcttctc gactgttttc cgatgtactc
     6721 tctgtatttc ggcggaaagc gcgtttgcac tgtgtgttgt tgaacttgtc ctctcccctc
     6781 ctgacctgcc ttcccccgcc ccccccgccc cccccgccgg ggttgggggc tgtttgtact
     6841 ggcgcttccg accccaggga cgccctggtt ctgtgcagtc tcctttctct gtaccggaca
     6901 ggatttgtgc acttgtgtgt tgtgtgcctg tgtttgtctc taaaaatgag gaccagaggc
     6961 cctctggact tctcgattcc tatttgggac attaaaaaaa aaaactggat tcctaacaag
     7021 cgccctgaac aggaggagcc agcttggctg gacccaggat ccgtggctgg gagagcgggg
     7081 agcgcagtgg gggtcgggtg cggctggggc tagcgttttg cctggtgggt gggaggtgcc
     7141 atgtgtctgg gccacgtgag cagggcctcg tgggcctgag gtggtgctgg ggcttcaggg
     7201 ctctgcacgc ttattaaccc tgaagacacc tgctcagaga gggtctccag agagcccccc
     7261 aaacagccca ggtgtcattg tgtggaccag agtgggggtg gcagggactt ggcgcaggaa
     7321 gagcctggga gggtcttttt ggagaacgct tgtgtggctt taaaagtcag ctgagggtcg
     7381 agaagactta gaaagtattg gggagaagtt gggggccacg gccatgtgca cagaggaaat
     7441 agggagggac aggagagcaa acctctcggg gagccttctc cccaggtcca aagggctgtc
     7501 gagggggtca cgtggatgga aatgggctga tgggagaatg ccccaggggg gagggtgggt
     7561 tgggattgga tgagttctgt ctgtttagga atattgaggg cctgagggtc atcgggtcag
     7621 agctcttaag agcttgggat ccagcattct aagggtctcc agttctgaga tgctgagttt
     7681 caggacaggg cttgagggct gtagaagccg ggggtggaat ttccacatgg gcccccatct
     7741 ggttctgtcc acgctcgatc catgaggtcc aagatgggat ctcagcactc ctctctgatc
     7801 agggcttatc tcaagtgtgt gtttcttctt ctcactcttt gaaaaaaaga caaattttgt
     7861 ctgttgactt tgacctttgc atgcacccct tgcacaaatc cttcccctgg tgacaccagg
     7921 agctacaagt ctccttggat ttctgtacaa ctcccaactc cctcctcagg aagcttggcc
     7981 tcggggctgg ccttccagag ggtggaggac ggaggctggg cctctggggc agatgggcca
     8041 agggctcccc tgtgatccta atgtaaacgg tgtggatagc acatgaccta gagcaggaga
     8101 tcacccatca ttcgacatgt cacccgtttt tatttcttcc cttccgattc ctgtttacga
     8161 gcacactttt tttaatggac atctgatttt ttaaatgagc gttcattttt taaacctaat
     8221 tgccattctt caccacatac acttcttttt tttttacatc ttgccttttc cacttaatat
     8281 tccatcgtca acatttttct tccttccata gacttcgtca catcactggc tgccttgtgt
     8341 ctcattgaga ggctatgtca atcattcaca tcaacctgct attgttacta ttgctaggca
     8401 taattcatct ttttttttta atgttacaga ttatgccaca gctaatggct tagcacaccc
     8461 actttttttt tttcattctt accaattatc ttcccacacc tagaaatgat catggtatgt
     8521 cagtttcatg gtatgtcagt ttctcctgct aggctgtgag ccccttaagg gcaagaagct
     8581 tgttgaattg atctttgtat ctctaatgcc tgaaatgttg tagatgctaa atgttagatg
     8641 cgaggatgga aggatggatg aagatgtgag tgagtgagtg gttggttggc tgttagagga
     8701 gaggagggaa ggatgggtga ataaaaggat tggtgaatga acaaatgaac ttcttagggt
     8761 tgagtctgtt gaatgaaagg ccgggaattt ttgtatggat attgactaat agcggaaggc
     8821 ttacagcatt ttataacgtc cagcgatgta ttagcatttt gttatgatat tgctagttta
     8881 tctctgttaa aaagtgtttt ctgtcatttt aacttgcatt gctttgatta ctaatgacgg
     8941 ttgaacattt tcacgtgtgt ttgttaaaaa tttgcatttt atcttctgtg aactgtttgt
     9001 ccaagtccac cgggtcatgg ctttgtgatg agactgtcaa ggatggaacg agtgtcctca
     9061 ggacgtagtg agcccttcct cactggaggc attcaagggg caggccaggc agatacccga
     9121 tgagggtggc tttaaggaga ttcaattagt gggagtgggg ttggcctaga tgacccttca
     9181 tttgacttta ggattttgct tcttcctggg aaatgggcat attccctctg tcagcccagc
     9241 agtatctaag gccacgtccc cctggtgggc ttgtgcatta gtggtttatg aactccaacc
     9301 tcatcctcta taactcttgt ggggcaggaa tatctctttg accctccagg ctccagagag
     9361 ctgtgctacc gtcttgtaga gttcagtggt ggacttccca cccgcccccc tcccccattt
     9421 cacctcgagg aggacaggcc cctgcacctc cacttgccac ctctcagcgc aatcagctga
     9481 ggcgatcagc tgccgtttac gttcccgggg tcctgtgagc agatgtcccc taggcctgcg
     9541 tgttggtctt tggggtttaa ttgattaagg ggacatgtcg gatcaggtct gataatgaat
     9601 cctccttcag aaatgggaca gttcaattcc gtgagctgag gagcagaagg gaccccatgt
     9661 tctcctcggg cttcccctca cggcccaccc caaggctagc cggggctcaa aggtcaccgt
     9721 ggccattcgg ggagggcgcg tgacccaagg agggcttgcc cctgcgttcc agaacacgct
     9781 ctgctctcag ctaagggccg catcttcccg ccgaccctct aatatagcac cgagtgctgt
     9841 ttgcctgtat tggaattcct cacccacgtg tttgccccag catcgaagct cgggaggcca
     9901 gtgatgcttc ccgacatgat ttcgatccat ccatccatcc atgcatttgg cctacgtctc
     9961 ctgacctggc gctttggtct ttccctttcc tgaaagcaaa ccttttcctc ttgggcaggc
    10021 tgtgtagtgc catgggctgt ggttatgaag tgaacgccct tatttgtggc ttctccctcc
    10081 ggggtcactg ctctgagcac gtcccagctg gatgtcatct gccaccgtca cccacacggc
    10141 ttccttcccc gtggcgcttt cccatgcatc acacaccgtg agggaaccaa ggccggggtc
    10201 cgagagcggc ccccctcccc cgcccgtgag cggagatgtc cccccaccta ggccaccctg
    10261 cctggtgcat ggtccctgtc atgagctttg ccctcagcct cctcccacca gatggcagtg
    10321 gttgtaactc atcccttcat tctttcgttc actcagtcca caaacgtttg aaaagatccg
    10381 ccggtgctat actagagctg gctcacagga cacgttccaa ccatcccctt tccaaggaaa
    10441 agatgagcat gtttgccagg ggccatgttt gtgtgtcagt aacaaggcgg ggccattgat
    10501 ttagctccca cccctagacc cgagttctgt tgaaagtttg gtagccctct ccaactttgt
    10561 tcctccccaa actgttgatt agtaaccggc aaactgtgtt tcttggtgct cagaaatcat
    10621 agcctgtagc ctccagaggc cagaatgaga gctggggggt ctgaaacgaa aggctgattc
    10681 tgcccgtgag caggctttca agtcattaga acaccctgat ctcgcacaaa ggggacctta
    10741 gagtcattcc tgtccctttg agatttgcta attctgggct ctatttagag aaaattgggg
    10801 aaggtgattg cttgcttgga tggcaaggat cgtgccccat gcggggtctg cacagaacaa
    10861 tctttccgag gcacacagcg cttggcgaac cctggatgca gcccccagca tccatgcagg
    10921 tcccaggcca ggcggcatcc accccacccc cgcccccgcc cccccgccaa ctccaactta
    10981 gctcactgct acctgcttgg gacaaggcgt agatctaggg gctctactga gaattctgta
    11041 tttgctttat cgccttggac agtgggggtg gtggacaaag ccaggaccct ggagctggac
    11101 aaacgtgcgg tttaaacaga tggcgacagc ttgagtctgt ctcctggtga taccatggca
    11161 cacccacctc gcagggctgt tgtgaggctt gatgtaacta ggatcttgaa ctgcgattct
    11221 gaaagggtgt gcgcgtgccc ccaggggtgg gttgggggtg ggttgacagg ccaggagggg
    11281 cagcctgatt cgggcaggtt agtgggaaat ctttttgtca aacatgcagt gggtattgtg
    11341 ggaacgaacg ctaaatttgt atggcgttcg aaggttagat ggttgtaatt tgggcaggaa
    11401 ccttcatgct gggtactgac gacccctttg ggcaatgccc tggaccccct ggggtacgcg
    11461 ttcacacctg tctccggaat cggaatcggt tggaaggccc catctgtgtc ttgcctaccg
    11521 ctgtgtctgg cctgtgggcg gcacttatcc tccacgagag acccctccca gcagtgtcct
    11581 ccccccaaaa tattaggcac cagctgtcaa agacactata cctctcccca ctaatgtccc
    11641 ctcaccccat tcacaacatt tgggctcaca tgtcagcagc ctgggtgcct aacacagtac
    11701 caggccagtg gtaggggtca ccttccattt ctgttgaaag gatgggtagg tagatggtca
    11761 aataacaaaa ttgtaaccca atgcaagcga cggttgttta taacctttac taagagattg
    11821 tattttgttc ctaattaacc tgttaacagt tgttgtatct cacggacttt tgtatgatgt
    11881 gtgttgtttg aaaaccagga ctcttgcctc tggtgtcact cgatggaact ttcgctgtgc
    11941 gattaacgag tcagtgtttt gtgttagaaa tgagaatctg gggggcgctt aactaactgt
    12001 gtggtgttgg gcaagtcact cctccttcct ctctgaccct cggtctcctt ttctctaagc
    12061 cgtgggtcac cagaaagctt actacctcac agggttgttg tgagggccca gggctgctaa
    12121 tgaaatgctg gctgtcactg agaatggtcg cgtgttgggg gctgtctgga agggaacagg
    12181 gaagcctttc ctagttccaa gtgaataaaa agtcagcctt gatcttatgc taagattgga
    12241 tttccaccag tcagtgggat gtgtaaggca gaggcccagc agtttgctgg cgtgtagcga
    12301 tgtgggccca gggtaaatat tggtttggtt catgagtgat ggctctttcc cttcctcgga
    12361 gcctgccttc ctctcccctc gcatcctgag ctgcttcttg tcgcgtgcag ggtgactgct
    12421 ctgggtttgc cctacctgtc gctgcctggt ccgtggaggg gcttctgcag acatctgtgg
    12481 gtgccccggg gtgtttctta gggaggaagg cggggggaca gtttcgagag agcccgagca
    12541 ggttcctggg taacatcttt agggactaaa acactttctt ctgcctttta agggagaggc
    12601 ccgtgctcct aatttcctcc acccccttcc ttctttccct gactgtaagg taaataaatg
    12661 agtcttcagc cccctccatg ggcctggaac caaacttggg gctgttccac gcccacgagc
    12721 tccctgcttg attggcgtgt gggcccattt tacagataag caagttgaga attggggacc
    12781 gcggagcgtc agagccagga ctgaacagtc ttccatgaaa agccgtgggg cactctttcc
    12841 acttggccag acaagccctc ccggttaccg tggccagcct ctgtcagccc aaatgtgccc
    12901 cagtgtgtct ctgtccccat cacgtgcctg gcagtgctcc cgtggaggtc acgctctcca
    12961 gagctctgcc ctgctctgga ggaagtccca ggaggcaccc ctgcaggggt cattttggat
    13021 cgggggtctc cacgtgacca cggaattcct ttcctggccc ttgtctcacg tgtgtgggac
    13081 atcagtgttc tgctagaaca tcccagattc catcccaggt gggcttgagc tggggatctt
    13141 gttgagtccc tccctcccgg cccctccctc tgtggaagcc tcaccaccct cctggtttgg
    13201 cctctgcctt tcacagctgc agtgggctct gtctgcacca cggccacccc atgtccttga
    13261 gaacttgtcc gaagctcccg aggggcgggc cccactgtag ggacaggttg gtagggtcct
    13321 cctctcagta gactgtgggc ctgtgtgtag gtgtctgctc cctgatggac ctcggtcctg
    13381 tgtgacccag ggggagggac tttctcaggt gcctggtgtt ttcagggcct tgtcctcttg
    13441 aggggggcag gcctgggtcc ctgcctctgg agggcaggta gggagtcgaa gctcagtgag
    13501 gtcgtgtcta agcagctctt agaccccctc cctgaccctg agacctacgc ttctctgacc
    13561 ctacaccccc tccctgaccc tgagacctat gcttctctga ccctacctaa cagccctgct
    13621 gtctgcacta gtaggtgcct aataggcgct cgctgactgg taaggcaggg ttttagtgga
    13681 tgtgaaaagc cgaattgact gttggctgat gtacacgttg aatctgcatg cgtttctgta
    13741 agagaaaaag gtgtgttttc ttggcaaaga ctcttcaggg caaagcctga gggtcttttg
    13801 tctgagccgg gggctcaccc cagggggcgg ccgccggaca gaccatcctg atggaaatag
    13861 ctgtcttctg aacattgttg gaaatattta tgtctagaat aaaactttat ttgggctaaa
    13921 atgtactcct atgtgtagtg gtccaagtga ttttttttat taagtacagt cgatttacaa
    13981 tgttgtgttc atttcttctg tacagcaaag tgactcacgt gtacatatat atgttctttt
    14041 tcatattctt ttccattatg gtttatcaca ggctattgac catagttccc tgtgctgtac
    14101 agtgggtggt ccaagtgatt ttgatgacgt ggcattcggc aattcccaag tgggaggtgt
    14161 cctggccccg cccatgccct ctctgggcct cgggagccct cgccttgggg aggggaggtc
    14221 ttttacctga aaagtctttg tctgtcctca ccattggtga caatcagcat taacctgtaa
    14281 ggcacatgcc cagtctggga tgcagccctg gtcagccagc agatgagggg gggatcggac
    14341 cccagacctt gattcctttc tcctcctctc gccctcctct ccaccccctc aagctgaggg
    14401 gcggacactt acccatttga gttctggttc tggcatcacc atttgccagc ttagtggcct
    14461 tgggagggtt acttggacca ccccgagcct tggttttcac ccctgtagaa tgggtacata
    14521 gtgacagtgt ccgctctggg gttgctggct cagtgccttg ctgcactcca tatatactgg
    14581 ctctgagatc aaggtctggg gctcgaagcc acctaagcac ctttatgtgt gtgtggcctg
    14641 gatgagtttg ctcacctgta atccggaaat agtcacatct acctggcgtg gttactgtcg
    14701 gattcaatga gattgttcac gtgaaaataa atgcttcgtt acccggcctc ccagttgggg
    14761 ctggccacag caccctgcag cctgtgggtc ctggtcgcgg aagccctggg ctttctggaa
    14821 ctgccaaaag ggggctgcag ggtggagtgg agggcgtcag gggagcaccc ggccagcttt
    14881 ggagggcagc gagggaagga agggtttgct tttcagtaca gagatggagc agcttcagag
    14941 gggacgggat tgaggtccaa gtgggcagga tcagggagaa gttttagaaa gaggaggaag
    15001 ctgatagttt agaaaacacc caagtttaat tggcaatggg ttggacagga gagctggggt
    15061 gggttttagc aaggccaagc atcctagatt tgggttagtg agtggaggac catcagaggt
    15121 tcctggtgca ggggggtgtg atgcttctgg aactctctcc gggaggggga gaccaggtgt
    15181 ggggtgccag agctgagggg cggcaggtag agggcagggg ctagtggctg ggtgctcacc
    15241 tcgcccccat ggctgctggg ggccagggcc ctctccccgt gtggtccagg cccctgagcg
    15301 acccgtctcc taaccctctc tctgctcctt gcctccaacg tgcctgtgtg catgagaact
    15361 cgtgtccgcc agtgagccca ggagcgggtg gccttcatca gcacctgtgt ctctctcagc
    15421 ctccacagcc acggggatac ctgcacgcgt tcccgtggga caggccggac ccaaagactc
    15481 tggacccggg ccactcccct gcatggacgg gcgcgtccac cccgcctccc cgccctctga
    15541 ctgatggact tcactgatct gagtgtcaga cacgcgggct ggacccctcc ccacccctca
    15601 cgaaccctga ga
//
LOCUS       XM_032620292           15908 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X7, mRNA.
ACCESSION   XM_032620292
VERSION     XM_032620292.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15908
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15908
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 106 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747726"
     CDS             6149..7291
                     /gene="LOC116747726"
                     /codon_start=1
                     /product="uncharacterized protein LOC116747726"
                     /protein_id="XP_032476183.1"
                     /db_xref="GeneID:116747726"
                     /translation="MNERMSDWKKWTNDWKEVREEGRKEGRRERRKKEGRNSRQRGRE
                     DSSSLGSLGSRQPKGVGTREAWLLACCVLVTCTFLAGGAGSGGPLPWSATVTPWLWGP
                     FHFIALILSFPICKLGMASAPRLDGSWGRCCPACWQCPVGRAQAPGPAEGCGNWTWVT
                     CEGGFSRQGAAEGQGAGDPGGCVGPAGCAVLGGAPLTSRACAGGLGRGPVGARSPEIV
                     FPQLSEMCPGAHQPGLLRGRLPSLLESGGPGAGASQPGVCRSGPRIPAPLPWHPQSRF
                     QGLAVFSTVFRCTLCISAESAFALCVVELVLSPPDLPSPAPPAPPAGVGGCLYWRFRP
                     QGRPGSVQSPFSVPDRICALVCCVPVFVSKNEDQRPSGLLDSYLGH"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccagcta agcttctcga aaggcctgtc tacacttgct
      961 gtcttccttc ctcacctcca gtttcctctc caacccactg cttcctgacc tcttctactc
     1021 cgctcatcgg ctgtcactaa gctccagtca cttctatgga cagacacgcc cctgtagacc
     1081 tcacagagtc acctgctcct ggctttcctc ctccttagtt tctgctagga actggagtat
     1141 ccagacctct caccttccgg aatctgcctc ttagcatctc accctgggtt ggagtctaaa
     1201 ccacctagag ctgaggcctt ggggtcagcc cgtcctcgac accctggcgg cgacagtcgg
     1261 ctgaagaact ggacggaaga ggcaggagag ttgccctgga ccagcgctcc ttcagaacgg
     1321 tcacctggca tctcatgccc acctggtgcc ccgtgactcc ctcctggttt gggctgaagc
     1381 cgtctcgaat cctccgtggg acaggaccgt ggacacgcaa ccccagtacc ctccagctcc
     1441 aaaatcggca gactaggatg gaagtggcct agctgggggg cccttcaaag ggccaaggag
     1501 aaaacgcggg ccaagagacc agcctctcaa acgggcttcg agctgcagtg accttcactt
     1561 accttccccc ccttgaaatg tctggaaaac ggaatggaca gattttctgt cttcaaagtt
     1621 tccggctaaa cctcttcaag ttctttattg tttgggactg agacactcag caatggtaat
     1681 gggtagttcc ttttgtattt gccttgaaag gccaaaatat ttttatatgg ctacagacaa
     1741 agccatctgt tttaagatga actctatgtc cgtcgtttcc caccggggag atcgtgtata
     1801 ccgtgtgtgt ctctgtgcac tcctgggtct tgaaacaggt ttctcatggg gatggccatt
     1861 cacaggggtc cacggggaag cacctgcccc accaaggggg cctggggact ctgaccctca
     1921 tctgtgtagg atgtgacccc cgggggggcg gcgggtgttc tggctgcact aacatgtact
     1981 ctgcctgtgc ctgcatccgc catgcatatg tgtcaaggac tgtgggttgt gtgcaccttg
     2041 gtgggaagaa gctggaaggt caaatatact gtgaatgttc tattgttctg gtcgggaggt
     2101 cattttgctg ggttctgtta cctggtccaa ataagtgaat ggatgaataa acgaatgaag
     2161 gcgtgaaaga gtgaagaaac taataaatag gtaaagaagc gtaccctgaa ggagatccaa
     2221 tttgaggcac aggagctcga tagataagtc aataaagcat tgaatcagta tataaacagg
     2281 gccaggcagg aaccgatgtc aggtcatcgt ggactaaggg aacacgtaca attcaagtat
     2341 gtagcgccta aagtttgtcc ataaaagaat aaagcctaga tgaaagaatg aataagaagt
     2401 cgagaggcat aaaccagtag tgagggtgag attatgcggc ccatcaaagt gaaaagatgc
     2461 aagagaaagg gcacggacgg ttgaaaggaa gaagaaaaac ggaaagacgc aaaataataa
     2521 ctaagcagga agatcacttt taaaattagg gggtgagaaa atatataagg aggactatgt
     2581 caggttatta agagccaagc attaggatta gtccagatac atgctccagc catagaaaaa
     2641 aaagagaaac aacagaggaa gagttcaaaa ggtagttaaa accgaaaaag gacccagggg
     2701 accagaggtg agagttaact ttaaccaaat tttttctaac tctgggcaca cataaataaa
     2761 taaacactga aaagaaagaa agccaaaaaa agaaaaaaaa aggagaaagg aaaggatggg
     2821 atgaataagt agtggacgta cgtggaccca gatgggagcg tggcaggagg ggtttcgagt
     2881 catccagtcc tgggacctga ggtctgttcc acgaaaggac taaaaaagag agagaacaaa
     2941 ataaagcatc taaataaaaa ccaagaaata tggaagaaaa agtaacaagt gttcagtcca
     3001 ggaatacatt agtgggtgaa taaataaaca tataaaagaa ggtggtgcta ggagtcgagg
     3061 tgcaggagac tgtcatgaat caaggttggt ccagttctaa aagccgcagt actatcagaa
     3121 cataataagc atctccataa acaagtgaat gagcatctaa agaaacaaag acacgatgaa
     3181 gtgaggcagg gaggggccat ggccacaggc actcctgagg ggcctgttgg aaggttgtaa
     3241 ttaatcttcg ccactgtctg ggcaccaaag atccgggagg aggaaagaag acagacgaga
     3301 aaggaggaga tttggaaagc tgcaacgaaa gagagaaaga aagagttaag aggtggtaaa
     3361 tgggtatatt cttggaagag ggttaggcta agagtggtaa aaaaggacca gccccaactg
     3421 tagatcacaa tgggtcaaaa tctgggcact cgttccgtta gtagaggagt gtatacctaa
     3481 taagaagaga aacacagcag gaaggaagaa tggtatgaag gaatgaagga aggaaggaag
     3541 gaacgagacg tggagaggca gggccccagg atgccgtttg caggtaacgt tataggattc
     3601 atcacttcat ggcacctgag cgccgacgaa tgaaagaatg caagaaagaa agagtgagag
     3661 agcgaaagag agaaacagtg aaaatgggag agaaatgata aatcagagac taaattagaa
     3721 atgaaaaagg aaaaaaggag aaaggtaata tattaacaga cagatagata aatacatata
     3781 taggagagag cagctctagg agtaagaatg agaggggggc ctgaaccaag cacagtgacg
     3841 aattcacatc tgggcttctg agatgggccg ccacctaccc aaccaggagg cagttcaaag
     3901 ctgaaatgca taagggagga cctcagtgag gccagggagg ggaaggccca ctgcttgtag
     3961 attatcatgt atccagttag gtgcccctgc cagccagaag tgtagaaaca atcaccaaaa
     4021 agaaagaaaa cctgaatgga tgcacaaatg cgtgaatgca agagtgagtg agaaaaaaga
     4081 tttgcagtga ccaaggaggc cggtcttgca ggggtgttag gattcatcca gtccctggtg
     4141 cctgatctcc aagagaagga aaggcggtaa aaaaagaaag gctgagagac tggtagaaaa
     4201 aaaatttgag attggagaaa aaaataaaac aatttaaaaa aggagtaaag aaggtaataa
     4261 attagcaagc catgcagtga agtctgtgag aagggactgg tttagcacag accatccaca
     4321 ttaattcaaa tctccggccc cgaagttgat aaacaataaa aacaatcaca taaataaatg
     4381 cctgaaggga taaattcaca cgttccatga gaatgtgaga aaaagtttga aaaattatag
     4441 gagggactgg gagaaagaaa gatgaaagaa aagaaaagaa aagagaccta tggaagaaga
     4501 ggcacttcct ggataagtac ttacatataa taaacaaata ttattcatta aatacaataa
     4561 ttagtaagag ctgaggttca tcataaagaa agaataagta gaggcatggc tgtgtgaaca
     4621 aatgaatgag aaggatgatt ttgattaatt cacgtctgca cccgaggctc acgggaataa
     4681 aagaatgcaa aaaagagagc ggtgaaggag gggcgtagac aattatgaca ggatggatat
     4741 tagcaacaaa aacatattga aggaataaat caatacgtac ataattctac gagagagagg
     4801 gccatgttag aacaaaaaaa cgagatggca ccgcgagcca ggaattatga ctgattcaaa
     4861 actgggctct tgagatagtt aaataaagcc tcaaccaaat caccagtatg aggaattaac
     4921 aaacaaaagc gagccccaca tggaccggtg ctgagaaggc tccaggaacc acagattatg
     4981 gttaatccaa ttctgtgcac ctgaggtcca taaataaaag aataaatatt gaaataaaag
     5041 agtgacagaa agaatgaatg gacccatgaa caactgaatt agaaatggaa atgcctggaa
     5101 cggccaggag tgcgttgccc atgggattgt cactcatctc actccggaca cctgaggttc
     5161 ctaagagtga aaagatgcaa gaaaaaaaac aacaaaaaaa cccatcaggg agtcaaagaa
     5221 agaggtgagg gaaggcaaag tgaaacaaag tgaaagagaa aggcggggtg ggggagggac
     5281 taataaaaag ctaacgaaga tatgggtgtg tctgagagga ggatgtgtta ggattaggga
     5341 tgaggtcatc atcaatccta atgatggatg agatcatcca atcccccttt ttagggcaag
     5401 ggaggatgga gagatgaaaa aaaaaagaag tgaaaaaagg agaaaggaag gatgataaac
     5461 ctccaaccaa ggtgataaat ggttagttaa aagagaggtt gtctgagcag ggattataat
     5521 tagtttacat acgtactcct taaatagata aatacatcac acctttccaa gaataaatga
     5581 aaaatagagg aaatacccga cccaaagaca aggctgcatc ttccaacctt ttatcatctt
     5641 tatgtaataa aatatatgca attgaggtcc ataaataaaa gaataaatag caaagtgtaa
     5701 aaggtgacta aaggcgagga agaaagatag caaaggcaaa taaacacatg ggccaacgat
     5761 ggttattttg cacatgcagt tttgactaat acagttattt cccaggagac tggtaagtaa
     5821 aagaataccc aaaataagaa agaaaggaag ggcaaatgca cgagtgcata agtgaatgaa
     5881 tgaatgagtg agaggtggtg ctgcctggac cagggacagg aggatgtcgc tcgcgggagc
     5941 ctgatttatc cttctgtgca cctgagtttg taagaatgaa ggaacggaag gaagagtgag
     6001 agaaagggag aaatacaaaa gaaaggaata aggaatcaaa ataatgtata aacgaataaa
     6061 taggagaagg gagagcttca tgaacgaggg gctgtgatta atcgaaagtc gtgctgttga
     6121 agtcggtaaa taaaggcgtc aaatctaaat gaatgaacga atgagtgact ggaagaaatg
     6181 gacgaatgac tggaaggaag tgagggagga aggaaggaag gagggaagga gggaaagaag
     6241 gaaaaaggaa ggaagaaata gtaggcagag agggagggag gactcttcca gtttggggtc
     6301 cctgggttcc cgccagccga agggagtggg taccagggag gcgtggctct tggcatgttg
     6361 tgtgcttgtt acctgcactt tcttggcggg aggagctggc tcaggaggac ccttgccttg
     6421 gagcgccact gtcacaccct ggctgtgggg gccatttcac ttcattgctc tcattctcag
     6481 tttccccatc tgtaaactcg gaatggcatc agctccccgc ttggacggat cgtggggcag
     6541 atgctgtcct gcgtgttggc agtgccccgt cggaagggct caggccccgg gccctgccga
     6601 aggttgtggg aactggacgt gggtcacctg cgagggaggc ttttcccgcc agggggcagc
     6661 agagggtcag ggagcaggag accctggggg ctgtgtgggc cccgccggct gcgctgtcct
     6721 gggaggggcg ccactcacat ccagggcctg tgcaggtggc ttgggaaggg ggccagtagg
     6781 ggccagatca ccagaaatcg tgttcccgca actttccgaa atgtgcccgg gagcccacca
     6841 gcccggtctt ctacggggta ggctgccttc ccttctcgag tcagggggtc ccggggcagg
     6901 tgcctctcag cccggggttt gcagaagtgg tcccaggatc ccggccccct tgccttggca
     6961 tccccagagc cggtttcaag gccttgctgt cttctcgact gttttccgat gtactctctg
     7021 tatttcggcg gaaagcgcgt ttgcactgtg tgttgttgaa cttgtcctct cccctcctga
     7081 cctgccttcc cccgcccccc ccgccccccc cgccggggtt gggggctgtt tgtactggcg
     7141 cttccgaccc cagggacgcc ctggttctgt gcagtctcct ttctctgtac cggacaggat
     7201 ttgtgcactt gtgtgttgtg tgcctgtgtt tgtctctaaa aatgaggacc agaggccctc
     7261 tggacttctc gattcctatt tgggacatta aaaaaaaaaa ctggattcct aacaagcgcc
     7321 ctgaacagga ggagccagct tggctggacc caggatccgt ggctgggaga gcggggagcg
     7381 cagtgggggt cgggtgcggc tggggctagc gttttgcctg gtgggtggga ggtgccatgt
     7441 gtctgggcca cgtgagcagg gcctcgtggg cctgaggtgg tgctggggct tcagggctct
     7501 gcacgcttat taaccctgaa gacacctgct cagagagggt ctccagagag ccccccaaac
     7561 agcccaggtg tcattgtgtg gaccagagtg ggggtggcag ggacttggcg caggaagagc
     7621 ctgggagggt ctttttggag aacgcttgtg tggctttaaa agtcagctga gggtcgagaa
     7681 gacttagaaa gtattgggga gaagttgggg gccacggcca tgtgcacaga ggaaataggg
     7741 agggacagga gagcaaacct ctcggggagc cttctcccca ggtccaaagg gctgtcgagg
     7801 gggtcacgtg gatggaaatg ggctgatggg agaatgcccc aggggggagg gtgggttggg
     7861 attggatgag ttctgtctgt ttaggaatat tgagggcctg agggtcatcg ggtcagagct
     7921 cttaagagct tgggatccag cattctaagg gtctccagtt ctgagatgct gagtttcagg
     7981 acagggcttg agggctgtag aagccggggg tggaatttcc acatgggccc ccatctggtt
     8041 ctgtccacgc tcgatccatg aggtccaaga tgggatctca gcactcctct ctgatcaggg
     8101 cttatctcaa gtgtgtgttt cttcttctca ctctttgaaa aaaagacaaa ttttgtctgt
     8161 tgactttgac ctttgcatgc accccttgca caaatccttc ccctggtgac accaggagct
     8221 acaagtctcc ttggatttct gtacaactcc caactccctc ctcaggaagc ttggcctcgg
     8281 ggctggcctt ccagagggtg gaggacggag gctgggcctc tggggcagat gggccaaggg
     8341 ctcccctgtg atcctaatgt aaacggtgtg gatagcacat gacctagagc aggagatcac
     8401 ccatcattcg acatgtcacc cgtttttatt tcttcccttc cgattcctgt ttacgagcac
     8461 acttttttta atggacatct gattttttaa atgagcgttc attttttaaa cctaattgcc
     8521 attcttcacc acatacactt cttttttttt tacatcttgc cttttccact taatattcca
     8581 tcgtcaacat ttttcttcct tccatagact tcgtcacatc actggctgcc ttgtgtctca
     8641 ttgagaggct atgtcaatca ttcacatcaa cctgctattg ttactattgc taggcataat
     8701 tcatcttttt tttttaatgt tacagattat gccacagcta atggcttagc acacccactt
     8761 tttttttttc attcttacca attatcttcc cacacctaga aatgatcatg gtatgtcagt
     8821 ttcatggtat gtcagtttct cctgctaggc tgtgagcccc ttaagggcaa gaagcttgtt
     8881 gaattgatct ttgtatctct aatgcctgaa atgttgtaga tgctaaatgt tagatgcgag
     8941 gatggaagga tggatgaaga tgtgagtgag tgagtggttg gttggctgtt agaggagagg
     9001 agggaaggat gggtgaataa aaggattggt gaatgaacaa atgaacttct tagggttgag
     9061 tctgttgaat gaaaggccgg gaatttttgt atggatattg actaatagcg gaaggcttac
     9121 agcattttat aacgtccagc gatgtattag cattttgtta tgatattgct agtttatctc
     9181 tgttaaaaag tgttttctgt cattttaact tgcattgctt tgattactaa tgacggttga
     9241 acattttcac gtgtgtttgt taaaaatttg cattttatct tctgtgaact gtttgtccaa
     9301 gtccaccggg tcatggcttt gtgatgagac tgtcaaggat ggaacgagtg tcctcaggac
     9361 gtagtgagcc cttcctcact ggaggcattc aaggggcagg ccaggcagat acccgatgag
     9421 ggtggcttta aggagattca attagtggga gtggggttgg cctagatgac ccttcatttg
     9481 actttaggat tttgcttctt cctgggaaat gggcatattc cctctgtcag cccagcagta
     9541 tctaaggcca cgtccccctg gtgggcttgt gcattagtgg tttatgaact ccaacctcat
     9601 cctctataac tcttgtgggg caggaatatc tctttgaccc tccaggctcc agagagctgt
     9661 gctaccgtct tgtagagttc agtggtggac ttcccacccg cccccctccc ccatttcacc
     9721 tcgaggagga caggcccctg cacctccact tgccacctct cagcgcaatc agctgaggcg
     9781 atcagctgcc gtttacgttc ccggggtcct gtgagcagat gtcccctagg cctgcgtgtt
     9841 ggtctttggg gtttaattga ttaaggggac atgtcggatc aggtctgata atgaatcctc
     9901 cttcagaaat gggacagttc aattccgtga gctgaggagc agaagggacc ccatgttctc
     9961 ctcgggcttc ccctcacggc ccaccccaag gctagccggg gctcaaaggt caccgtggcc
    10021 attcggggag ggcgcgtgac ccaaggaggg cttgcccctg cgttccagaa cacgctctgc
    10081 tctcagctaa gggccgcatc ttcccgccga ccctctaata tagcaccgag tgctgtttgc
    10141 ctgtattgga attcctcacc cacgtgtttg ccccagcatc gaagctcggg aggccagtga
    10201 tgcttcccga catgatttcg atccatccat ccatccatgc atttggccta cgtctcctga
    10261 cctggcgctt tggtctttcc ctttcctgaa agcaaacctt ttcctcttgg gcaggctgtg
    10321 tagtgccatg ggctgtggtt atgaagtgaa cgcccttatt tgtggcttct ccctccgggg
    10381 tcactgctct gagcacgtcc cagctggatg tcatctgcca ccgtcaccca cacggcttcc
    10441 ttccccgtgg cgctttccca tgcatcacac accgtgaggg aaccaaggcc ggggtccgag
    10501 agcggccccc ctcccccgcc cgtgagcgga gatgtccccc cacctaggcc accctgcctg
    10561 gtgcatggtc cctgtcatga gctttgccct cagcctcctc ccaccagatg gcagtggttg
    10621 taactcatcc cttcattctt tcgttcactc agtccacaaa cgtttgaaaa gatccgccgg
    10681 tgctatacta gagctggctc acaggacacg ttccaaccat cccctttcca aggaaaagat
    10741 gagcatgttt gccaggggcc atgtttgtgt gtcagtaaca aggcggggcc attgatttag
    10801 ctcccacccc tagacccgag ttctgttgaa agtttggtag ccctctccaa ctttgttcct
    10861 ccccaaactg ttgattagta accggcaaac tgtgtttctt ggtgctcaga aatcatagcc
    10921 tgtagcctcc agaggccaga atgagagctg gggggtctga aacgaaaggc tgattctgcc
    10981 cgtgagcagg ctttcaagtc attagaacac cctgatctcg cacaaagggg accttagagt
    11041 cattcctgtc cctttgagat ttgctaattc tgggctctat ttagagaaaa ttggggaagg
    11101 tgattgcttg cttggatggc aaggatcgtg ccccatgcgg ggtctgcaca gaacaatctt
    11161 tccgaggcac acagcgcttg gcgaaccctg gatgcagccc ccagcatcca tgcaggtccc
    11221 aggccaggcg gcatccaccc cacccccgcc cccgcccccc cgccaactcc aacttagctc
    11281 actgctacct gcttgggaca aggcgtagat ctaggggctc tactgagaat tctgtatttg
    11341 ctttatcgcc ttggacagtg ggggtggtgg acaaagccag gaccctggag ctggacaaac
    11401 gtgcggttta aacagatggc gacagcttga gtctgtctcc tggtgatacc atggcacacc
    11461 cacctcgcag ggctgttgtg aggcttgatg taactaggat cttgaactgc gattctgaaa
    11521 gggtgtgcgc gtgcccccag gggtgggttg ggggtgggtt gacaggccag gaggggcagc
    11581 ctgattcggg caggttagtg ggaaatcttt ttgtcaaaca tgcagtgggt attgtgggaa
    11641 cgaacgctaa atttgtatgg cgttcgaagg ttagatggtt gtaatttggg caggaacctt
    11701 catgctgggt actgacgacc cctttgggca atgccctgga ccccctgggg tacgcgttca
    11761 cacctgtctc cggaatcgga atcggttgga aggccccatc tgtgtcttgc ctaccgctgt
    11821 gtctggcctg tgggcggcac ttatcctcca cgagagaccc ctcccagcag tgtcctcccc
    11881 ccaaaatatt aggcaccagc tgtcaaagac actatacctc tccccactaa tgtcccctca
    11941 ccccattcac aacatttggg ctcacatgtc agcagcctgg gtgcctaaca cagtaccagg
    12001 ccagtggtag gggtcacctt ccatttctgt tgaaaggatg ggtaggtaga tggtcaaata
    12061 acaaaattgt aacccaatgc aagcgacggt tgtttataac ctttactaag agattgtatt
    12121 ttgttcctaa ttaacctgtt aacagttgtt gtatctcacg gacttttgta tgatgtgtgt
    12181 tgtttgaaaa ccaggactct tgcctctggt gtcactcgat ggaactttcg ctgtgcgatt
    12241 aacgagtcag tgttttgtgt tagaaatgag aatctggggg gcgcttaact aactgtgtgg
    12301 tgttgggcaa gtcactcctc cttcctctct gaccctcggt ctccttttct ctaagccgtg
    12361 ggtcaccaga aagcttacta cctcacaggg ttgttgtgag ggcccagggc tgctaatgaa
    12421 atgctggctg tcactgagaa tggtcgcgtg ttgggggctg tctggaaggg aacagggaag
    12481 cctttcctag ttccaagtga ataaaaagtc agccttgatc ttatgctaag attggatttc
    12541 caccagtcag tgggatgtgt aaggcagagg cccagcagtt tgctggcgtg tagcgatgtg
    12601 ggcccagggt aaatattggt ttggttcatg agtgatggct ctttcccttc ctcggagcct
    12661 gccttcctct cccctcgcat cctgagctgc ttcttgtcgc gtgcagggtg actgctctgg
    12721 gtttgcccta cctgtcgctg cctggtccgt ggaggggctt ctgcagacat ctgtgggtgc
    12781 cccggggtgt ttcttaggga ggaaggcggg gggacagttt cgagagagcc cgagcaggtt
    12841 cctgggtaac atctttaggg actaaaacac tttcttctgc cttttaaggg agaggcccgt
    12901 gctcctaatt tcctccaccc ccttccttct ttccctgact gtaaggtaaa taaatgagtc
    12961 ttcagccccc tccatgggcc tggaaccaaa cttggggctg ttccacgccc acgagctccc
    13021 tgcttgattg gcgtgtgggc ccattttaca gataagcaag ttgagaattg gggaccgcgg
    13081 agcgtcagag ccaggactga acagtcttcc atgaaaagcc gtggggcact ctttccactt
    13141 ggccagacaa gccctcccgg ttaccgtggc cagcctctgt cagcccaaat gtgccccagt
    13201 gtgtctctgt ccccatcacg tgcctggcag tgctcccgtg gaggtcacgc tctccagagc
    13261 tctgccctgc tctggaggaa gtcccaggag gcacccctgc aggggtcatt ttggatcggg
    13321 ggtctccacg tgaccacgga attcctttcc tggcccttgt ctcacgtgtg tgggacatca
    13381 gtgttctgct agaacatccc agattccatc ccaggtgggc ttgagctggg gatcttgttg
    13441 agtccctccc tcccggcccc tccctctgtg gaagcctcac caccctcctg gtttggcctc
    13501 tgcctttcac agctgcagtg ggctctgtct gcaccacggc caccccatgt ccttgagaac
    13561 ttgtccgaag ctcccgaggg gcgggcccca ctgtagggac aggttggtag ggtcctcctc
    13621 tcagtagact gtgggcctgt gtgtaggtgt ctgctccctg atggacctcg gtcctgtgtg
    13681 acccaggggg agggactttc tcaggtgcct ggtgttttca gggccttgtc ctcttgaggg
    13741 gggcaggcct gggtccctgc ctctggaggg caggtaggga gtcgaagctc agtgaggtcg
    13801 tgtctaagca gctcttagac cccctccctg accctgagac ctacgcttct ctgaccctac
    13861 accccctccc tgaccctgag acctatgctt ctctgaccct acctaacagc cctgctgtct
    13921 gcactagtag gtgcctaata ggcgctcgct gactggtaag gcagggtttt agtggatgtg
    13981 aaaagccgaa ttgactgttg gctgatgtac acgttgaatc tgcatgcgtt tctgtaagag
    14041 aaaaaggtgt gttttcttgg caaagactct tcagggcaaa gcctgagggt cttttgtctg
    14101 agccgggggc tcaccccagg gggcggccgc cggacagacc atcctgatgg aaatagctgt
    14161 cttctgaaca ttgttggaaa tatttatgtc tagaataaaa ctttatttgg gctaaaatgt
    14221 actcctatgt gtagtggtcc aagtgatttt ttttattaag tacagtcgat ttacaatgtt
    14281 gtgttcattt cttctgtaca gcaaagtgac tcacgtgtac atatatatgt tctttttcat
    14341 attcttttcc attatggttt atcacaggct attgaccata gttccctgtg ctgtacagtg
    14401 ggtggtccaa gtgattttga tgacgtggca ttcggcaatt cccaagtggg aggtgtcctg
    14461 gccccgccca tgccctctct gggcctcggg agccctcgcc ttggggaggg gaggtctttt
    14521 acctgaaaag tctttgtctg tcctcaccat tggtgacaat cagcattaac ctgtaaggca
    14581 catgcccagt ctgggatgca gccctggtca gccagcagat gaggggggga tcggacccca
    14641 gaccttgatt cctttctcct cctctcgccc tcctctccac cccctcaagc tgaggggcgg
    14701 acacttaccc atttgagttc tggttctggc atcaccattt gccagcttag tggccttggg
    14761 agggttactt ggaccacccc gagccttggt tttcacccct gtagaatggg tacatagtga
    14821 cagtgtccgc tctggggttg ctggctcagt gccttgctgc actccatata tactggctct
    14881 gagatcaagg tctggggctc gaagccacct aagcaccttt atgtgtgtgt ggcctggatg
    14941 agtttgctca cctgtaatcc ggaaatagtc acatctacct ggcgtggtta ctgtcggatt
    15001 caatgagatt gttcacgtga aaataaatgc ttcgttaccc ggcctcccag ttggggctgg
    15061 ccacagcacc ctgcagcctg tgggtcctgg tcgcggaagc cctgggcttt ctggaactgc
    15121 caaaaggggg ctgcagggtg gagtggaggg cgtcagggga gcacccggcc agctttggag
    15181 ggcagcgagg gaaggaaggg tttgcttttc agtacagaga tggagcagct tcagagggga
    15241 cgggattgag gtccaagtgg gcaggatcag ggagaagttt tagaaagagg aggaagctga
    15301 tagtttagaa aacacccaag tttaattggc aatgggttgg acaggagagc tggggtgggt
    15361 tttagcaagg ccaagcatcc tagatttggg ttagtgagtg gaggaccatc agaggttcct
    15421 ggtgcagggg ggtgtgatgc ttctggaact ctctccggga gggggagacc aggtgtgggg
    15481 tgccagagct gaggggcggc aggtagaggg caggggctag tggctgggtg ctcacctcgc
    15541 ccccatggct gctgggggcc agggccctct ccccgtgtgg tccaggcccc tgagcgaccc
    15601 gtctcctaac cctctctctg ctccttgcct ccaacgtgcc tgtgtgcatg agaactcgtg
    15661 tccgccagtg agcccaggag cgggtggcct tcatcagcac ctgtgtctct ctcagcctcc
    15721 acagccacgg ggatacctgc acgcgttccc gtgggacagg ccggacccaa agactctgga
    15781 cccgggccac tcccctgcat ggacgggcgc gtccaccccg cctccccgcc ctctgactga
    15841 tggacttcac tgatctgagt gtcagacacg cgggctggac ccctccccac ccctcacgaa
    15901 ccctgaga
//
LOCUS       XM_032620301           15672 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X8, mRNA.
ACCESSION   XM_032620301
VERSION     XM_032620301.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15672
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..15672
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 106 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747726"
     CDS             5913..7055
                     /gene="LOC116747726"
                     /codon_start=1
                     /product="uncharacterized protein LOC116747726"
                     /protein_id="XP_032476192.1"
                     /db_xref="GeneID:116747726"
                     /translation="MNERMSDWKKWTNDWKEVREEGRKEGRRERRKKEGRNSRQRGRE
                     DSSSLGSLGSRQPKGVGTREAWLLACCVLVTCTFLAGGAGSGGPLPWSATVTPWLWGP
                     FHFIALILSFPICKLGMASAPRLDGSWGRCCPACWQCPVGRAQAPGPAEGCGNWTWVT
                     CEGGFSRQGAAEGQGAGDPGGCVGPAGCAVLGGAPLTSRACAGGLGRGPVGARSPEIV
                     FPQLSEMCPGAHQPGLLRGRLPSLLESGGPGAGASQPGVCRSGPRIPAPLPWHPQSRF
                     QGLAVFSTVFRCTLCISAESAFALCVVELVLSPPDLPSPAPPAPPAGVGGCLYWRFRP
                     QGRPGSVQSPFSVPDRICALVCCVPVFVSKNEDQRPSGLLDSYLGH"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccagttt cctctccaac ccactgcttc ctgacctctt
      961 ctactccgct catcggctgt cactaaggtc agcccgtcct cgacaccctg gcggcgacag
     1021 tcggctgaag aactggacgg aagaggcagg agagttgccc tggaccagcg ctccttcaga
     1081 acggtcacct ggcatctcat gcccacctgg tgccccgtga ctccctcctg gtttgggctg
     1141 aagccgtctc gaatcctccg tgggacagga ccgtggacac gcaaccccag taccctccag
     1201 ctccaaaatc ggcagactag gatggaagtg gcctagctgg ggggcccttc aaagggccaa
     1261 ggagaaaacg cgggccaaga gaccagcctc tcaaacgggc ttcgagctgc agtgaccttc
     1321 acttaccttc ccccccttga aatgtctgga aaacggaatg gacagatttt ctgtcttcaa
     1381 agtttccggc taaacctctt caagttcttt attgtttggg actgagacac tcagcaatgg
     1441 taatgggtag ttccttttgt atttgccttg aaaggccaaa atatttttat atggctacag
     1501 acaaagccat ctgttttaag atgaactcta tgtccgtcgt ttcccaccgg ggagatcgtg
     1561 tataccgtgt gtgtctctgt gcactcctgg gtcttgaaac aggtttctca tggggatggc
     1621 cattcacagg ggtccacggg gaagcacctg ccccaccaag ggggcctggg gactctgacc
     1681 ctcatctgtg taggatgtga cccccggggg ggcggcgggt gttctggctg cactaacatg
     1741 tactctgcct gtgcctgcat ccgccatgca tatgtgtcaa ggactgtggg ttgtgtgcac
     1801 cttggtggga agaagctgga aggtcaaata tactgtgaat gttctattgt tctggtcggg
     1861 aggtcatttt gctgggttct gttacctggt ccaaataagt gaatggatga ataaacgaat
     1921 gaaggcgtga aagagtgaag aaactaataa ataggtaaag aagcgtaccc tgaaggagat
     1981 ccaatttgag gcacaggagc tcgatagata agtcaataaa gcattgaatc agtatataaa
     2041 cagggccagg caggaaccga tgtcaggtca tcgtggacta agggaacacg tacaattcaa
     2101 gtatgtagcg cctaaagttt gtccataaaa gaataaagcc tagatgaaag aatgaataag
     2161 aagtcgagag gcataaacca gtagtgaggg tgagattatg cggcccatca aagtgaaaag
     2221 atgcaagaga aagggcacgg acggttgaaa ggaagaagaa aaacggaaag acgcaaaata
     2281 ataactaagc aggaagatca cttttaaaat tagggggtga gaaaatatat aaggaggact
     2341 atgtcaggtt attaagagcc aagcattagg attagtccag atacatgctc cagccataga
     2401 aaaaaaagag aaacaacaga ggaagagttc aaaaggtagt taaaaccgaa aaaggaccca
     2461 ggggaccaga ggtgagagtt aactttaacc aaattttttc taactctggg cacacataaa
     2521 taaataaaca ctgaaaagaa agaaagccaa aaaaagaaaa aaaaaggaga aaggaaagga
     2581 tgggatgaat aagtagtgga cgtacgtgga cccagatggg agcgtggcag gaggggtttc
     2641 gagtcatcca gtcctgggac ctgaggtctg ttccacgaaa ggactaaaaa agagagagaa
     2701 caaaataaag catctaaata aaaaccaaga aatatggaag aaaaagtaac aagtgttcag
     2761 tccaggaata cattagtggg tgaataaata aacatataaa agaaggtggt gctaggagtc
     2821 gaggtgcagg agactgtcat gaatcaaggt tggtccagtt ctaaaagccg cagtactatc
     2881 agaacataat aagcatctcc ataaacaagt gaatgagcat ctaaagaaac aaagacacga
     2941 tgaagtgagg cagggagggg ccatggccac aggcactcct gaggggcctg ttggaaggtt
     3001 gtaattaatc ttcgccactg tctgggcacc aaagatccgg gaggaggaaa gaagacagac
     3061 gagaaaggag gagatttgga aagctgcaac gaaagagaga aagaaagagt taagaggtgg
     3121 taaatgggta tattcttgga agagggttag gctaagagtg gtaaaaaagg accagcccca
     3181 actgtagatc acaatgggtc aaaatctggg cactcgttcc gttagtagag gagtgtatac
     3241 ctaataagaa gagaaacaca gcaggaagga agaatggtat gaaggaatga aggaaggaag
     3301 gaaggaacga gacgtggaga ggcagggccc caggatgccg tttgcaggta acgttatagg
     3361 attcatcact tcatggcacc tgagcgccga cgaatgaaag aatgcaagaa agaaagagtg
     3421 agagagcgaa agagagaaac agtgaaaatg ggagagaaat gataaatcag agactaaatt
     3481 agaaatgaaa aaggaaaaaa ggagaaaggt aatatattaa cagacagata gataaataca
     3541 tatataggag agagcagctc taggagtaag aatgagaggg gggcctgaac caagcacagt
     3601 gacgaattca catctgggct tctgagatgg gccgccacct acccaaccag gaggcagttc
     3661 aaagctgaaa tgcataaggg aggacctcag tgaggccagg gaggggaagg cccactgctt
     3721 gtagattatc atgtatccag ttaggtgccc ctgccagcca gaagtgtaga aacaatcacc
     3781 aaaaagaaag aaaacctgaa tggatgcaca aatgcgtgaa tgcaagagtg agtgagaaaa
     3841 aagatttgca gtgaccaagg aggccggtct tgcaggggtg ttaggattca tccagtccct
     3901 ggtgcctgat ctccaagaga aggaaaggcg gtaaaaaaag aaaggctgag agactggtag
     3961 aaaaaaaatt tgagattgga gaaaaaaata aaacaattta aaaaaggagt aaagaaggta
     4021 ataaattagc aagccatgca gtgaagtctg tgagaaggga ctggtttagc acagaccatc
     4081 cacattaatt caaatctccg gccccgaagt tgataaacaa taaaaacaat cacataaata
     4141 aatgcctgaa gggataaatt cacacgttcc atgagaatgt gagaaaaagt ttgaaaaatt
     4201 ataggaggga ctgggagaaa gaaagatgaa agaaaagaaa agaaaagaga cctatggaag
     4261 aagaggcact tcctggataa gtacttacat ataataaaca aatattattc attaaataca
     4321 ataattagta agagctgagg ttcatcataa agaaagaata agtagaggca tggctgtgtg
     4381 aacaaatgaa tgagaaggat gattttgatt aattcacgtc tgcacccgag gctcacggga
     4441 ataaaagaat gcaaaaaaga gagcggtgaa ggaggggcgt agacaattat gacaggatgg
     4501 atattagcaa caaaaacata ttgaaggaat aaatcaatac gtacataatt ctacgagaga
     4561 gagggccatg ttagaacaaa aaaacgagat ggcaccgcga gccaggaatt atgactgatt
     4621 caaaactggg ctcttgagat agttaaataa agcctcaacc aaatcaccag tatgaggaat
     4681 taacaaacaa aagcgagccc cacatggacc ggtgctgaga aggctccagg aaccacagat
     4741 tatggttaat ccaattctgt gcacctgagg tccataaata aaagaataaa tattgaaata
     4801 aaagagtgac agaaagaatg aatggaccca tgaacaactg aattagaaat ggaaatgcct
     4861 ggaacggcca ggagtgcgtt gcccatggga ttgtcactca tctcactccg gacacctgag
     4921 gttcctaaga gtgaaaagat gcaagaaaaa aaacaacaaa aaaacccatc agggagtcaa
     4981 agaaagaggt gagggaaggc aaagtgaaac aaagtgaaag agaaaggcgg ggtgggggag
     5041 ggactaataa aaagctaacg aagatatggg tgtgtctgag aggaggatgt gttaggatta
     5101 gggatgaggt catcatcaat cctaatgatg gatgagatca tccaatcccc ctttttaggg
     5161 caagggagga tggagagatg aaaaaaaaaa gaagtgaaaa aaggagaaag gaaggatgat
     5221 aaacctccaa ccaaggtgat aaatggttag ttaaaagaga ggttgtctga gcagggatta
     5281 taattagttt acatacgtac tccttaaata gataaataca tcacaccttt ccaagaataa
     5341 atgaaaaata gaggaaatac ccgacccaaa gacaaggctg catcttccaa ccttttatca
     5401 tctttatgta ataaaatata tgcaattgag gtccataaat aaaagaataa atagcaaagt
     5461 gtaaaaggtg actaaaggcg aggaagaaag atagcaaagg caaataaaca catgggccaa
     5521 cgatggttat tttgcacatg cagttttgac taatacagtt atttcccagg agactggtaa
     5581 gtaaaagaat acccaaaata agaaagaaag gaagggcaaa tgcacgagtg cataagtgaa
     5641 tgaatgaatg agtgagaggt ggtgctgcct ggaccaggga caggaggatg tcgctcgcgg
     5701 gagcctgatt tatccttctg tgcacctgag tttgtaagaa tgaaggaacg gaaggaagag
     5761 tgagagaaag ggagaaatac aaaagaaagg aataaggaat caaaataatg tataaacgaa
     5821 taaataggag aagggagagc ttcatgaacg aggggctgtg attaatcgaa agtcgtgctg
     5881 ttgaagtcgg taaataaagg cgtcaaatct aaatgaatga acgaatgagt gactggaaga
     5941 aatggacgaa tgactggaag gaagtgaggg aggaaggaag gaaggaggga aggagggaaa
     6001 gaaggaaaaa ggaaggaaga aatagtaggc agagagggag ggaggactct tccagtttgg
     6061 ggtccctggg ttcccgccag ccgaagggag tgggtaccag ggaggcgtgg ctcttggcat
     6121 gttgtgtgct tgttacctgc actttcttgg cgggaggagc tggctcagga ggacccttgc
     6181 cttggagcgc cactgtcaca ccctggctgt gggggccatt tcacttcatt gctctcattc
     6241 tcagtttccc catctgtaaa ctcggaatgg catcagctcc ccgcttggac ggatcgtggg
     6301 gcagatgctg tcctgcgtgt tggcagtgcc ccgtcggaag ggctcaggcc ccgggccctg
     6361 ccgaaggttg tgggaactgg acgtgggtca cctgcgaggg aggcttttcc cgccaggggg
     6421 cagcagaggg tcagggagca ggagaccctg ggggctgtgt gggccccgcc ggctgcgctg
     6481 tcctgggagg ggcgccactc acatccaggg cctgtgcagg tggcttggga agggggccag
     6541 taggggccag atcaccagaa atcgtgttcc cgcaactttc cgaaatgtgc ccgggagccc
     6601 accagcccgg tcttctacgg ggtaggctgc cttcccttct cgagtcaggg ggtcccgggg
     6661 caggtgcctc tcagcccggg gtttgcagaa gtggtcccag gatcccggcc cccttgcctt
     6721 ggcatcccca gagccggttt caaggccttg ctgtcttctc gactgttttc cgatgtactc
     6781 tctgtatttc ggcggaaagc gcgtttgcac tgtgtgttgt tgaacttgtc ctctcccctc
     6841 ctgacctgcc ttcccccgcc ccccccgccc cccccgccgg ggttgggggc tgtttgtact
     6901 ggcgcttccg accccaggga cgccctggtt ctgtgcagtc tcctttctct gtaccggaca
     6961 ggatttgtgc acttgtgtgt tgtgtgcctg tgtttgtctc taaaaatgag gaccagaggc
     7021 cctctggact tctcgattcc tatttgggac attaaaaaaa aaaactggat tcctaacaag
     7081 cgccctgaac aggaggagcc agcttggctg gacccaggat ccgtggctgg gagagcgggg
     7141 agcgcagtgg gggtcgggtg cggctggggc tagcgttttg cctggtgggt gggaggtgcc
     7201 atgtgtctgg gccacgtgag cagggcctcg tgggcctgag gtggtgctgg ggcttcaggg
     7261 ctctgcacgc ttattaaccc tgaagacacc tgctcagaga gggtctccag agagcccccc
     7321 aaacagccca ggtgtcattg tgtggaccag agtgggggtg gcagggactt ggcgcaggaa
     7381 gagcctggga gggtcttttt ggagaacgct tgtgtggctt taaaagtcag ctgagggtcg
     7441 agaagactta gaaagtattg gggagaagtt gggggccacg gccatgtgca cagaggaaat
     7501 agggagggac aggagagcaa acctctcggg gagccttctc cccaggtcca aagggctgtc
     7561 gagggggtca cgtggatgga aatgggctga tgggagaatg ccccaggggg gagggtgggt
     7621 tgggattgga tgagttctgt ctgtttagga atattgaggg cctgagggtc atcgggtcag
     7681 agctcttaag agcttgggat ccagcattct aagggtctcc agttctgaga tgctgagttt
     7741 caggacaggg cttgagggct gtagaagccg ggggtggaat ttccacatgg gcccccatct
     7801 ggttctgtcc acgctcgatc catgaggtcc aagatgggat ctcagcactc ctctctgatc
     7861 agggcttatc tcaagtgtgt gtttcttctt ctcactcttt gaaaaaaaga caaattttgt
     7921 ctgttgactt tgacctttgc atgcacccct tgcacaaatc cttcccctgg tgacaccagg
     7981 agctacaagt ctccttggat ttctgtacaa ctcccaactc cctcctcagg aagcttggcc
     8041 tcggggctgg ccttccagag ggtggaggac ggaggctggg cctctggggc agatgggcca
     8101 agggctcccc tgtgatccta atgtaaacgg tgtggatagc acatgaccta gagcaggaga
     8161 tcacccatca ttcgacatgt cacccgtttt tatttcttcc cttccgattc ctgtttacga
     8221 gcacactttt tttaatggac atctgatttt ttaaatgagc gttcattttt taaacctaat
     8281 tgccattctt caccacatac acttcttttt tttttacatc ttgccttttc cacttaatat
     8341 tccatcgtca acatttttct tccttccata gacttcgtca catcactggc tgccttgtgt
     8401 ctcattgaga ggctatgtca atcattcaca tcaacctgct attgttacta ttgctaggca
     8461 taattcatct ttttttttta atgttacaga ttatgccaca gctaatggct tagcacaccc
     8521 actttttttt tttcattctt accaattatc ttcccacacc tagaaatgat catggtatgt
     8581 cagtttcatg gtatgtcagt ttctcctgct aggctgtgag ccccttaagg gcaagaagct
     8641 tgttgaattg atctttgtat ctctaatgcc tgaaatgttg tagatgctaa atgttagatg
     8701 cgaggatgga aggatggatg aagatgtgag tgagtgagtg gttggttggc tgttagagga
     8761 gaggagggaa ggatgggtga ataaaaggat tggtgaatga acaaatgaac ttcttagggt
     8821 tgagtctgtt gaatgaaagg ccgggaattt ttgtatggat attgactaat agcggaaggc
     8881 ttacagcatt ttataacgtc cagcgatgta ttagcatttt gttatgatat tgctagttta
     8941 tctctgttaa aaagtgtttt ctgtcatttt aacttgcatt gctttgatta ctaatgacgg
     9001 ttgaacattt tcacgtgtgt ttgttaaaaa tttgcatttt atcttctgtg aactgtttgt
     9061 ccaagtccac cgggtcatgg ctttgtgatg agactgtcaa ggatggaacg agtgtcctca
     9121 ggacgtagtg agcccttcct cactggaggc attcaagggg caggccaggc agatacccga
     9181 tgagggtggc tttaaggaga ttcaattagt gggagtgggg ttggcctaga tgacccttca
     9241 tttgacttta ggattttgct tcttcctggg aaatgggcat attccctctg tcagcccagc
     9301 agtatctaag gccacgtccc cctggtgggc ttgtgcatta gtggtttatg aactccaacc
     9361 tcatcctcta taactcttgt ggggcaggaa tatctctttg accctccagg ctccagagag
     9421 ctgtgctacc gtcttgtaga gttcagtggt ggacttccca cccgcccccc tcccccattt
     9481 cacctcgagg aggacaggcc cctgcacctc cacttgccac ctctcagcgc aatcagctga
     9541 ggcgatcagc tgccgtttac gttcccgggg tcctgtgagc agatgtcccc taggcctgcg
     9601 tgttggtctt tggggtttaa ttgattaagg ggacatgtcg gatcaggtct gataatgaat
     9661 cctccttcag aaatgggaca gttcaattcc gtgagctgag gagcagaagg gaccccatgt
     9721 tctcctcggg cttcccctca cggcccaccc caaggctagc cggggctcaa aggtcaccgt
     9781 ggccattcgg ggagggcgcg tgacccaagg agggcttgcc cctgcgttcc agaacacgct
     9841 ctgctctcag ctaagggccg catcttcccg ccgaccctct aatatagcac cgagtgctgt
     9901 ttgcctgtat tggaattcct cacccacgtg tttgccccag catcgaagct cgggaggcca
     9961 gtgatgcttc ccgacatgat ttcgatccat ccatccatcc atgcatttgg cctacgtctc
    10021 ctgacctggc gctttggtct ttccctttcc tgaaagcaaa ccttttcctc ttgggcaggc
    10081 tgtgtagtgc catgggctgt ggttatgaag tgaacgccct tatttgtggc ttctccctcc
    10141 ggggtcactg ctctgagcac gtcccagctg gatgtcatct gccaccgtca cccacacggc
    10201 ttccttcccc gtggcgcttt cccatgcatc acacaccgtg agggaaccaa ggccggggtc
    10261 cgagagcggc ccccctcccc cgcccgtgag cggagatgtc cccccaccta ggccaccctg
    10321 cctggtgcat ggtccctgtc atgagctttg ccctcagcct cctcccacca gatggcagtg
    10381 gttgtaactc atcccttcat tctttcgttc actcagtcca caaacgtttg aaaagatccg
    10441 ccggtgctat actagagctg gctcacagga cacgttccaa ccatcccctt tccaaggaaa
    10501 agatgagcat gtttgccagg ggccatgttt gtgtgtcagt aacaaggcgg ggccattgat
    10561 ttagctccca cccctagacc cgagttctgt tgaaagtttg gtagccctct ccaactttgt
    10621 tcctccccaa actgttgatt agtaaccggc aaactgtgtt tcttggtgct cagaaatcat
    10681 agcctgtagc ctccagaggc cagaatgaga gctggggggt ctgaaacgaa aggctgattc
    10741 tgcccgtgag caggctttca agtcattaga acaccctgat ctcgcacaaa ggggacctta
    10801 gagtcattcc tgtccctttg agatttgcta attctgggct ctatttagag aaaattgggg
    10861 aaggtgattg cttgcttgga tggcaaggat cgtgccccat gcggggtctg cacagaacaa
    10921 tctttccgag gcacacagcg cttggcgaac cctggatgca gcccccagca tccatgcagg
    10981 tcccaggcca ggcggcatcc accccacccc cgcccccgcc cccccgccaa ctccaactta
    11041 gctcactgct acctgcttgg gacaaggcgt agatctaggg gctctactga gaattctgta
    11101 tttgctttat cgccttggac agtgggggtg gtggacaaag ccaggaccct ggagctggac
    11161 aaacgtgcgg tttaaacaga tggcgacagc ttgagtctgt ctcctggtga taccatggca
    11221 cacccacctc gcagggctgt tgtgaggctt gatgtaacta ggatcttgaa ctgcgattct
    11281 gaaagggtgt gcgcgtgccc ccaggggtgg gttgggggtg ggttgacagg ccaggagggg
    11341 cagcctgatt cgggcaggtt agtgggaaat ctttttgtca aacatgcagt gggtattgtg
    11401 ggaacgaacg ctaaatttgt atggcgttcg aaggttagat ggttgtaatt tgggcaggaa
    11461 ccttcatgct gggtactgac gacccctttg ggcaatgccc tggaccccct ggggtacgcg
    11521 ttcacacctg tctccggaat cggaatcggt tggaaggccc catctgtgtc ttgcctaccg
    11581 ctgtgtctgg cctgtgggcg gcacttatcc tccacgagag acccctccca gcagtgtcct
    11641 ccccccaaaa tattaggcac cagctgtcaa agacactata cctctcccca ctaatgtccc
    11701 ctcaccccat tcacaacatt tgggctcaca tgtcagcagc ctgggtgcct aacacagtac
    11761 caggccagtg gtaggggtca ccttccattt ctgttgaaag gatgggtagg tagatggtca
    11821 aataacaaaa ttgtaaccca atgcaagcga cggttgttta taacctttac taagagattg
    11881 tattttgttc ctaattaacc tgttaacagt tgttgtatct cacggacttt tgtatgatgt
    11941 gtgttgtttg aaaaccagga ctcttgcctc tggtgtcact cgatggaact ttcgctgtgc
    12001 gattaacgag tcagtgtttt gtgttagaaa tgagaatctg gggggcgctt aactaactgt
    12061 gtggtgttgg gcaagtcact cctccttcct ctctgaccct cggtctcctt ttctctaagc
    12121 cgtgggtcac cagaaagctt actacctcac agggttgttg tgagggccca gggctgctaa
    12181 tgaaatgctg gctgtcactg agaatggtcg cgtgttgggg gctgtctgga agggaacagg
    12241 gaagcctttc ctagttccaa gtgaataaaa agtcagcctt gatcttatgc taagattgga
    12301 tttccaccag tcagtgggat gtgtaaggca gaggcccagc agtttgctgg cgtgtagcga
    12361 tgtgggccca gggtaaatat tggtttggtt catgagtgat ggctctttcc cttcctcgga
    12421 gcctgccttc ctctcccctc gcatcctgag ctgcttcttg tcgcgtgcag ggtgactgct
    12481 ctgggtttgc cctacctgtc gctgcctggt ccgtggaggg gcttctgcag acatctgtgg
    12541 gtgccccggg gtgtttctta gggaggaagg cggggggaca gtttcgagag agcccgagca
    12601 ggttcctggg taacatcttt agggactaaa acactttctt ctgcctttta agggagaggc
    12661 ccgtgctcct aatttcctcc acccccttcc ttctttccct gactgtaagg taaataaatg
    12721 agtcttcagc cccctccatg ggcctggaac caaacttggg gctgttccac gcccacgagc
    12781 tccctgcttg attggcgtgt gggcccattt tacagataag caagttgaga attggggacc
    12841 gcggagcgtc agagccagga ctgaacagtc ttccatgaaa agccgtgggg cactctttcc
    12901 acttggccag acaagccctc ccggttaccg tggccagcct ctgtcagccc aaatgtgccc
    12961 cagtgtgtct ctgtccccat cacgtgcctg gcagtgctcc cgtggaggtc acgctctcca
    13021 gagctctgcc ctgctctgga ggaagtccca ggaggcaccc ctgcaggggt cattttggat
    13081 cgggggtctc cacgtgacca cggaattcct ttcctggccc ttgtctcacg tgtgtgggac
    13141 atcagtgttc tgctagaaca tcccagattc catcccaggt gggcttgagc tggggatctt
    13201 gttgagtccc tccctcccgg cccctccctc tgtggaagcc tcaccaccct cctggtttgg
    13261 cctctgcctt tcacagctgc agtgggctct gtctgcacca cggccacccc atgtccttga
    13321 gaacttgtcc gaagctcccg aggggcgggc cccactgtag ggacaggttg gtagggtcct
    13381 cctctcagta gactgtgggc ctgtgtgtag gtgtctgctc cctgatggac ctcggtcctg
    13441 tgtgacccag ggggagggac tttctcaggt gcctggtgtt ttcagggcct tgtcctcttg
    13501 aggggggcag gcctgggtcc ctgcctctgg agggcaggta gggagtcgaa gctcagtgag
    13561 gtcgtgtcta agcagctctt agaccccctc cctgaccctg agacctacgc ttctctgacc
    13621 ctacaccccc tccctgaccc tgagacctat gcttctctga ccctacctaa cagccctgct
    13681 gtctgcacta gtaggtgcct aataggcgct cgctgactgg taaggcaggg ttttagtgga
    13741 tgtgaaaagc cgaattgact gttggctgat gtacacgttg aatctgcatg cgtttctgta
    13801 agagaaaaag gtgtgttttc ttggcaaaga ctcttcaggg caaagcctga gggtcttttg
    13861 tctgagccgg gggctcaccc cagggggcgg ccgccggaca gaccatcctg atggaaatag
    13921 ctgtcttctg aacattgttg gaaatattta tgtctagaat aaaactttat ttgggctaaa
    13981 atgtactcct atgtgtagtg gtccaagtga ttttttttat taagtacagt cgatttacaa
    14041 tgttgtgttc atttcttctg tacagcaaag tgactcacgt gtacatatat atgttctttt
    14101 tcatattctt ttccattatg gtttatcaca ggctattgac catagttccc tgtgctgtac
    14161 agtgggtggt ccaagtgatt ttgatgacgt ggcattcggc aattcccaag tgggaggtgt
    14221 cctggccccg cccatgccct ctctgggcct cgggagccct cgccttgggg aggggaggtc
    14281 ttttacctga aaagtctttg tctgtcctca ccattggtga caatcagcat taacctgtaa
    14341 ggcacatgcc cagtctggga tgcagccctg gtcagccagc agatgagggg gggatcggac
    14401 cccagacctt gattcctttc tcctcctctc gccctcctct ccaccccctc aagctgaggg
    14461 gcggacactt acccatttga gttctggttc tggcatcacc atttgccagc ttagtggcct
    14521 tgggagggtt acttggacca ccccgagcct tggttttcac ccctgtagaa tgggtacata
    14581 gtgacagtgt ccgctctggg gttgctggct cagtgccttg ctgcactcca tatatactgg
    14641 ctctgagatc aaggtctggg gctcgaagcc acctaagcac ctttatgtgt gtgtggcctg
    14701 gatgagtttg ctcacctgta atccggaaat agtcacatct acctggcgtg gttactgtcg
    14761 gattcaatga gattgttcac gtgaaaataa atgcttcgtt acccggcctc ccagttgggg
    14821 ctggccacag caccctgcag cctgtgggtc ctggtcgcgg aagccctggg ctttctggaa
    14881 ctgccaaaag ggggctgcag ggtggagtgg agggcgtcag gggagcaccc ggccagcttt
    14941 ggagggcagc gagggaagga agggtttgct tttcagtaca gagatggagc agcttcagag
    15001 gggacgggat tgaggtccaa gtgggcagga tcagggagaa gttttagaaa gaggaggaag
    15061 ctgatagttt agaaaacacc caagtttaat tggcaatggg ttggacagga gagctggggt
    15121 gggttttagc aaggccaagc atcctagatt tgggttagtg agtggaggac catcagaggt
    15181 tcctggtgca ggggggtgtg atgcttctgg aactctctcc gggaggggga gaccaggtgt
    15241 ggggtgccag agctgagggg cggcaggtag agggcagggg ctagtggctg ggtgctcacc
    15301 tcgcccccat ggctgctggg ggccagggcc ctctccccgt gtggtccagg cccctgagcg
    15361 acccgtctcc taaccctctc tctgctcctt gcctccaacg tgcctgtgtg catgagaact
    15421 cgtgtccgcc agtgagccca ggagcgggtg gccttcatca gcacctgtgt ctctctcagc
    15481 ctccacagcc acggggatac ctgcacgcgt tcccgtggga caggccggac ccaaagactc
    15541 tggacccggg ccactcccct gcatggacgg gcgcgtccac cccgcctccc cgccctctga
    15601 ctgatggact tcactgatct gagtgtcaga cacgcgggct ggacccctcc ccacccctca
    15661 cgaaccctga ga
//
LOCUS       XR_004348111            7802 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X9, misc_RNA.
ACCESSION   XR_004348111
VERSION     XR_004348111.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7802
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7802
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 48 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     misc_RNA        1..7802
                     /gene="LOC116747726"
                     /product="uncharacterized LOC116747726, transcript variant
                     X9"
                     /db_xref="GeneID:116747726"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccaggta ggggctgcac ccagatgggt gctgggctga
      961 cttgagtaag cacatgcatg gtgcacgtgg tcatttccag agcactttcg atgttctgtg
     1021 cctatgttat ttctatgtcc gatgtccatg tgagtgaggt cgcctcattt acaggtgagg
     1081 atgaatttgg catcgatttg agtaattcta aaagatggag agcgagaaga cgtatttgaa
     1141 cagagtgccc ctccctaggg gacgggactg attcacgttt acagtgaggt cgctgaggct
     1201 ggaggagcgt cgttgctggc aagagaaggg gtcagagttg gaccctgggt gccatttgtg
     1261 gctgcccctt accccctgcc ccagagttac actaagagcc ctttgatttc caatcaaatg
     1321 tttgacaatg gggcagcctg tttgaaatcc cagctgccca gggtggtctt gggggtcttg
     1381 ggtggcccca atgctggtac catgtgctgg cctcacctct caataatggt gtgaccttaa
     1441 atacgttgct taacttctcc aagtctcagt tcttttcatg gcctaaatgg ggattaggga
     1501 agaaaaaaaa aaaaaggcaa cacaaaaaaa cacccgcgtt tatctacccc acagggcgct
     1561 tttgaaggcc aaatgatgta accactatga aagtgctttg taaattgctg tggaaattgc
     1621 gagatactta acaccaggaa gctgtccctg attatcgcat gcccagccct gtcccccctc
     1681 agttaataac agctagcacc cactaggttc tgtgcttgcg ctcagtaaat aaattccaga
     1741 agaaataaaa acagaattaa ttcaacaaac attttctgga ccgcctacga tatgccccgc
     1801 acaccaggcc tggtatgtga tacaaagatg atgaaaacag tctcttggaa gctaattggg
     1861 gtcctcgttt gaccggcact ttctttcgtc cccttttaag ccaaccagtt ttgtccggac
     1921 gagacaaaaa caacttgggc tgctttagag aaacccggct tggtgtagac aatagctccc
     1981 gggcttctga aaggggctga ttggattatg tggcaaatga aggtggaagg atgacttgga
     2041 aggtgacaaa tgaagtgggc ggagatctgc tgtgagttaa tccaggctat taggagggac
     2101 cttttgtctt ccagaggctg gcaggagctt ttaccactgg gttttacatc cttaatgtaa
     2161 aggacgcata atttatggtc agtgaaaacc caggccccag tgagatttga gtgggctgta
     2221 aaatcgagcc tagtgagtaa ttacagggag catttatgtc tccctttgca gttggcaaag
     2281 acctttttgc aatcatcaat tcatttgaac ctcacaactc cctgtccgga cccggggctg
     2341 gcctgagcct cctaggggaa gaggccgtca agtggccttc agattggggc gtctgaggca
     2401 tctgacacgg tcaggggaga ggcgtcccct gccctggcct ctcctgtctc agacctggcc
     2461 ttccggccag cagcgattcc ctccgaattc ctaacttggc tcggtcggca gctctgagcc
     2521 tccgggcccc tcctgctctg ctttctagcc actctctctt tcctttcgca gctaagcttc
     2581 tcgaaaggcc tgtctacact tgctgtcttc cttcctcacc tccagtttcc tctccaaccc
     2641 actgcttcct gacctcttct actccgctca tcggctgtca ctaaggtaat gactttcctg
     2701 gaggttaacc ctggacaccc tcatgggcac atgacgcgca gacacgcatc cagtgtttca
     2761 cattttccag ctccagtcac ttctatggac agacacgccc ctgtagacct cacagagtca
     2821 cctgctcctg gctttcctcc tccttagttt ctgctaggaa ctggagtatc cagacctctc
     2881 accttccgga atctgcctct tagcatctca ccctgggttg gagtctaaac cacctagagc
     2941 tgaggccttg gggtaggtca gtttttccaa gccacctttt tctcagttgc agtatagggt
     3001 gtctttacct ggcaggtcag gtgggcggtc ttgcaggtaa gattttaagt cccactcttt
     3061 gagggacttg aaataaattc aataaagtgt tcatgagaaa atacaattga ggtcatcgtc
     3121 agattttctt gtaggttaag ttcccacagg gaggaccaaa gggagaagaa agaggtgggg
     3181 ggagggggca gtgggagaga aagaagcaaa gaatagaaaa gggcaccaaa gacaaaaaaa
     3241 gtaggaaagg gagacttaga aaatatgaaa acccaccaaa acaaacaaac aaacaaacaa
     3301 aaaaccacat ccagaggaag gagtttcttc ttgggttagg caaaaagaaa gtaaacagga
     3361 aaaaggttta aaattcatta tcccagtgac aaatcccagg aagctttcaa atcaaattgc
     3421 cccattttgg gtttttaact ccttctatca ggtttaacct ctttacctcc tccatcctgg
     3481 ttaaacgccc cctcggctgg tgattaaatc ccgaagctac acggagtctt tcaatgaatg
     3541 aatggcccac agaaagagac cccccctccc cccagctgtg tttttcagtt ttattccact
     3601 ttccgccctt ttccgttaat gaacacaggg ctaatctcgg gcctcgtcga ggaagaggct
     3661 gcagacgtta atgaggtagc tgctggattc cagtattcgc cccttaagga ggcggctttg
     3721 tctgggaagg aaaaacacgc tgattatcat aataagtgct gcagggccgc ggccgcgggg
     3781 cacgggctcc gtgggtctga agccacactt ctaattttgg tgctggagcc caggattcat
     3841 tttgcttccc atttaagtct ctgcctctgt cccagcttgc gatcccttga gcggggtgga
     3901 aagttgcggg cagctttggg ccacagatag ggctgctttg cagaaagttc ctttgttcga
     3961 ccctacatgc agaccagcaa tgggccaggg cgtttcaggc ctctgggatc cgttttccca
     4021 aaagcagaga gatgggggtg cacgtttcca actctgcctc acaccagact tgtttttagg
     4081 actcactggt gttgagcctt taaggtcctc aaatgctaga aaagccaagg cttaggcata
     4141 gtccccgtag aatgatcgca gggtcagtgc ccgtggaacg ctccttccag gtcaggaaac
     4201 ggatgggtat tggtacccca gtccccccac caagggaagg gcatggttgg ggctcacatt
     4261 tggcccccac ataggatgag agggatgaga ggaccagcga tttgtcagga ccactcagat
     4321 ccagcaccag aacctgtagt cactcctttt atcccctaaa tgtccccctc ccatatgtcc
     4381 tgcacgcccc cccgcccccc ccccccaaat tctccctttc tgtcctgatc cttagactcc
     4441 caggagccca tgaatgtctt tatttttaat tgttattacc tttttttttg gccgcaccct
     4501 gcggcatgtg acatcctagc tccccgaccg gggatcgaac ccgcgccccc tgcattggaa
     4561 gcgcggagtc ttaaccactg gaccaccagg gaagtctccc agtaatcttt ttagagcaag
     4621 tgtgcctgag ttggaaactt gcccttatga atcctgagtt ttggatgttt ctcaccccaa
     4681 gacagatcaa tcaagatgag atcactccaa ttaaacttca ggctctaccc agaccttcag
     4741 ccaaatggcg gggggcgggg gggggacaac taagggaaaa gtgaggtgtt tggtgcaaga
     4801 aaacttttag ttgaaaactt ccttaactta cttgttggct aaaggttccc tggcattcat
     4861 ggatcagaat ttgatactct ttccaagtta acaaaaccaa ccctcgtcca gccccctaaa
     4921 tggaaatgtt gaaggaggcc caggtggcca gttggggcaa ctccactcct tttggtggca
     4981 gtgacccaga tgttgcctgg acttggggac tggatgaggg tgagcacctc tgagaatagg
     5041 gatcccacct acactcctcc gtgcactttt gggagagtaa aatgacagag cagttcctgg
     5101 tgtttctaaa agaggattta ttttaaatag gaaaaaaaaa ataacccata ggaccctttt
     5161 caccctcaca tacatactaa ttaaaatacg tgtcccaaag tcatcaatat tccagcacct
     5221 gagaacctgg ggagggggtg gaaggcagtc gaattcaact tctggggaca ccagcagagg
     5281 ggtctgtgct acttgctctt gagtgtatgg cagcctgttt taacctgcat cctcgtttcc
     5341 gtggtccccc ttctgtgcct ggatggatgc tgctcccagc tgcctatgca cacgggaccc
     5401 ctgtgcccca cgcttccagc ccagaggtcc tgtcaggctt cctgagtggg ccctgtgact
     5461 cccagggccc actggtctcg gcatcctccg ttaagtgaat cccagaggct caggagatcc
     5521 cctcgacccc agttcttctg attttctgtt ttttctgctt ttattgcccc tttctcttct
     5581 ccatctaccc attcttctct acttcatcac catttcctca tctggtcctc tgggggggtg
     5641 tcctaggcca gccactcctc ctttgggtgt cccagcacca gcctggcaca aagtggggtt
     5701 cagtaagagt atgtggggtg tatgtttgga caggtgagtc aatgaaggaa cttgactgcc
     5761 atacttgagc tgctaggcgg gagttgttga ggatgcaaga agttttaggt caaaagggtg
     5821 gagggtggat gtccttttac tgagaggagt gggcattgcc ccaccccagc cccatttgag
     5881 tgggggcctc accagtctca ccccttcgtt cactcatgcg tccatcccgt catccaacag
     5941 ttgatcctta ctgagcaagc ccacggtccg gccccgggct gggcacctgc caccctagcg
     6001 catcccttga tggcctctgc gtccccgggg ggtggcgggc cagggggttg cttctgccca
     6061 gggtggcctc gtggctcccg ggcgcgggag gagcggactc ccgctctgca ggcaaggcag
     6121 gtggggtggg gtgtgagggg cgggcctggt ttggccggct ggcccccttt tagttcacac
     6181 cctggggggg ggcgggggcg ggcctggaac ctgcccttct ctagggctcg ccgcaggtcc
     6241 cagccagccc ctccggccct ctcggcctcc caccccatcc cctagctgag tgctcgtggc
     6301 tgagctggac ccccgtacct gaagttcagg actgaggtgg cggcgtacgg gcagctgtgg
     6361 tgtatgtccc cttgggctct ggccacacag gtctccctct tgagttgggg tccgtgagct
     6421 ggacccctcc ctccatgatg ccttcctccc cctggggcta agtccagctc ctttgccccc
     6481 gacttgtggg ctggggcgtg tccaacgtca agggcccctg gccgggaacc tccagggagc
     6541 actacaggcc ctgcctctgc ctagctgccc acctgctctg ctctccctgg cggctcctcc
     6601 cctggctccc ccctccccct tgctaggttg actgcccacc tgtggctccg ctttccccac
     6661 ctgacccatt tccccttctc tgtgccccag tcactgggct tgggaccctc tgggtctcac
     6721 ccatccagcc ctctacctaa caggttggtt ttcctcgctg agcccacacc tgtggttacc
     6781 tggccctgcc tgctgccccg cccacctccc acctgcttgc ctttcgcctg cctctccccc
     6841 agggcaagga ggccctcccc ctcagggtcg cccaagtttc cggttggtct ccagtgctcg
     6901 tggcacccct cccctaccat cctcagaggc ctcctcccat gggcctggcc tcccgggctc
     6961 tgagtgcctg tgggctgctg ccagacctct gtcctgctcc cttcccccca ccccaatccc
     7021 cccagactgc ttgtcatcat gtcctaccgg gcctgcctgt acggccgtcc tgtatccacg
     7081 agtcaggctc tgccttgccc ccggcctcgt ggccggtctg ggggctgcca cctggcctgt
     7141 cgcttctgtt cttgtgcttc tcttcttgta ccttctcctg tcattggcat ccctacgagc
     7201 cacctccctc caccgaaaac caggctgcag gtcagcccgt cctcgacacc ctggcggcga
     7261 cagtcggctg aagaactgga cggaagaggc aggagagttg ccctggacca gcgctccttc
     7321 agaacggtca cctggcatct catgcccacc tggtgccccg tgactccctc ctggtttggg
     7381 ctgaagccgt ctcgaatcct ccgtgggaca ggaccgtgga cacgcaaccc cagtaccctc
     7441 cagctccaaa atccctccac agccacgggg atacctgcac gcgttcccgt gggacaggcc
     7501 ggacccaaag actctggacc cgggccactc ccctgcatgg acgggcgcgt ccaccccgcc
     7561 tccccgccct ctgactgatg gacttcactg atctgagtgt cagacacgcg ggctggaccc
     7621 ctccccaccc ctcacgaacc ctgagacttg ggggagcgcc gagcctcgct gtctgcatct
     7681 gtgaaacggg atcggacgcc tacctcacag ggctgttgtg aggggcatgt gacacggtcg
     7741 caaagtgccc tcctgggggc ttggcacacc ctgctgtgtc tcaataaatg tgtttcttgc
     7801 ct
//
LOCUS       XR_004348112            1613 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X10, misc_RNA.
ACCESSION   XR_004348112
VERSION     XR_004348112.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1613
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     misc_RNA        1..1613
                     /gene="LOC116747726"
                     /product="uncharacterized LOC116747726, transcript variant
                     X10"
                     /db_xref="GeneID:116747726"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccagcta agcttctcga aaggcctgtc tacacttgct
      961 gtcttccttc ctcacctcca gtttcctctc caacccactg cttcctgacc tcttctactc
     1021 cgctcatcgg ctgtcactaa ggtcagcccg tcctcgacac cctggcggcg acagtcggct
     1081 gaagaactgg acggaagagg caggagagtt gccctggacc agcgctcctt cagaacggtc
     1141 acctggcatc tcatgcccac ctggtgcccc gtgactccct cctggtttgg gctgaagccg
     1201 tctcgaatcc tccgtgggac aggaccgtgg acacgcaacc ccagtaccct ccagctccaa
     1261 aatccctcca cagccacggg gatacctgca cgcgttcccg tgggacaggc cggacccaaa
     1321 gactctggac ccgggccact cccctgcatg gacgggcgcg tccaccccgc ctccccgccc
     1381 tctgactgat ggacttcact gatctgagtg tcagacacgc gggctggacc cctccccacc
     1441 cctcacgaac cctgagactt gggggagcgc cgagcctcgc tgtctgcatc tgtgaaacgg
     1501 gatcggacgc ctacctcaca gggctgttgt gaggggcatg tgacacggtc gcaaagtgcc
     1561 ctcctggggg cttggcacac cctgctgtgt ctcaataaat gtgtttcttg cct
//
LOCUS       XR_004348115            1499 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747726
            (LOC116747726), transcript variant X11, misc_RNA.
ACCESSION   XR_004348115
VERSION     XR_004348115.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1499
                     /gene="LOC116747726"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747726"
     misc_RNA        1..1499
                     /gene="LOC116747726"
                     /product="uncharacterized LOC116747726, transcript variant
                     X11"
                     /db_xref="GeneID:116747726"
ORIGIN      
        1 gcagacggcg gagagctggg atggagcgcg ccgtggcccg ctggccttgg ccgcagctcc
       61 tcgggagagc cggggcgccc gcgcgagaac ctccctactt gggtctctgt tcaaggatga
      121 catcatccgc ttgcctccct gtcttcaagg accacctctg gatgccaagc tgatgccaag
      181 gtgcttgctg ctcacctcca gctcatgagg atgctgggag catggattcc tggatgccac
      241 cagcatacaa agcagccact ggcagtgacc cccaggacca ggacgacgaa ggatgaagag
      301 gaccagaact gaccagctgt ccctcttggc taacggctta gaccaatgcc ctagtgaggg
      361 ggcattggtc attaacgccg gacctttgct atgcttctgc cttgatgcta tgactgcttt
      421 tctatgtgtc tctgcttgtg ttaacatgtc agcgacctgg agggtttcca accccaggga
      481 ggtgtcagtc tttctcagtc caccccgttg ttacccccgt gatgttcgaa tggaagagtc
      541 cctgtgggca cttctcagga gggggacctg ggccaagggc ttgaccagca tctcactggc
      601 cattccaagg cccagggtgg gcttctggaa tgagcgcgtg tcccaacgcc atgctactga
      661 accgccaagg acatccccac cacctttgag atcaccctgt cctttcgggg gaacggggtt
      721 gagaagagca acctcccagg gtgttgtgag tattgaatga gtccaagcag cctcgcgtag
      781 ggccaggcat agaggaggca gtcaacagat gtttgttgaa acagtttggc cggtccatcc
      841 ctacccctct cacctgtctt acacctctta tttattctcc cacagcgctc cggacagccc
      901 tagtccacgg ggctctccct gcaccaggtc agcccgtcct cgacaccctg gcggcgacag
      961 tcggctgaag aactggacgg aagaggcagg agagttgccc tggaccagcg ctccttcaga
     1021 acggtcacct ggcatctcat gcccacctgg tgccccgtga ctccctcctg gtttgggctg
     1081 aagccgtctc gaatcctccg tgggacagga ccgtggacac gcaaccccag taccctccag
     1141 ctccaaaatc cctccacagc cacggggata cctgcacgcg ttcccgtggg acaggccgga
     1201 cccaaagact ctggacccgg gccactcccc tgcatggacg ggcgcgtcca ccccgcctcc
     1261 ccgccctctg actgatggac ttcactgatc tgagtgtcag acacgcgggc tggacccctc
     1321 cccacccctc acgaaccctg agacttgggg gagcgccgag cctcgctgtc tgcatctgtg
     1381 aaacgggatc ggacgcctac ctcacagggc tgttgtgagg ggcatgtgac acggtcgcaa
     1441 agtgccctcc tgggggcttg gcacaccctg ctgtgtctca ataaatgtgt ttcttgcct
//
LOCUS       XM_032620319            3371 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pitrilysin metallopeptidase 1 (PITRM1),
            transcript variant X1, mRNA.
ACCESSION   XM_032620319
VERSION     XM_032620319.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3371
                     /gene="PITRM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 17 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116747780"
     CDS             29..3124
                     /gene="PITRM1"
                     /codon_start=1
                     /product="presequence protease, mitochondrial isoform X1"
                     /protein_id="XP_032476210.1"
                     /db_xref="GeneID:116747780"
                     /translation="MWRSGCRAGVLLRRLNGRSASLGAWRWASTTACERALLRYRVGE
                     KIHGFTVSQVTSVPELSLTAVKLSHDSTGAQHLHLAREDRNNLFSVQFRTTPMDSSGA
                     PHVLEHTVLCGSQRYPCRDPFFKMLNRSLSTFMNAFTASDYTLYPFSTQNPKDFRNLL
                     SVYLDAAFFPCLRELDFWQEGWRLEHEDPNDPQTPLVFKGVVFNEMKGAFTDNERMFS
                     QHVQSHLLPDHTYSVVSGGDPLCIPDLTWEQLRQFHATHYHPSNARFFTYGNFPLEQH
                     LKQIHEEALSKFQRIKPHTTVPAQKPWDKPREFQITCAPDSLAAGSSEQTTISVSFLL
                     PDITDTFEAFTLSLLSSLLISGPNSPFYKALIESGLGTDFSPDVGYNGCTREAYFSVG
                     LQGIAEKDIQTVQDLVDRTLDDIIEKGFEDDRIEALLHKIEIQMKHQSVSFGLALTSY
                     IASCWNHDGDPVELLKLGSQVAQFRKCLEENPKFLQEKVKQYFKNNQHKLTLSMKPDD
                     KYSEKQMQLETEKLKQKVNSLSPEDKQQIYEKGLELQAQQSQPQDVSCLPALKVSDIE
                     PRIPFTDVEVALAAGDTPVQYCTQPTNGVIYFRAFSSLNTLPEELRPYVPLFCNVLTK
                     LGCGALDYRELAQQVDLKTGGLAAAPHVLPDDSHLDTYEQGVLFSSFCLDRNLPDMMH
                     LWSEIFNNPCFEAEEHFRVLVKMTAQELSNGVPDAGHLYASIRAGRTLAPAGHLQETF
                     GGMDQVRLMKRIAEMTDIKPILRKLPLIRKHLLNCDNFRCSVNATPQQMSQVENSVDN
                     FLRTLSRSKKERKPVHPHVVEKPAPKGPGRHSPFTRKLVTDPTFKPCPMKTHFQLPFP
                     VNYVAECIRTAPYAAPAHASLKILARLMTAKCLHTEIREKGGAYGGGARLSYGGIFTL
                     YSYRDPHSTETLQSFLRAIDWAKSGRFTQQDINEAKLSVFAAVDAPVAPSDKGLDCFL
                     YGLSDEAKQAHREQLFAVSHEDLVDVSNRYLGAGRSTHGMALLGPDNESIAKDPSWIV
                     R"
     misc_feature    143..3037
                     /gene="PITRM1"
                     /note="Zn-dependent peptidase, M16 (insulinase) family
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: Cym1; COG1026"
                     /db_xref="CDD:440649"
ORIGIN      
        1 acggccggcg gtgcgccggt cacaagccat gtggcgcagc gggtgcagag ctggggtttt
       61 gctgcggagg ctgaacggcc gcagcgccag cctcggagca tggaggtggg cgagcaccac
      121 ggcctgtgag agggcgctgc tgcggtaccg ggtcggagag aagatccacg gcttcactgt
      181 cagccaggta acatctgttc ctgagctgtc cctgaccgcc gtgaaactca gccatgacag
      241 cacgggagca cagcatttgc acctggccag agaggacaga aataacctgt tcagtgtgca
      301 gttccgcacc acccccatgg acagcagcgg tgccccgcac gtcctggagc acacggtcct
      361 gtgcggctct cagaggtacc cctgccggga ccccttcttc aagatgctga acaggtcgct
      421 gtctacgttc atgaacgcct tcacggctag tgattacacc ctgtacccat tttccacaca
      481 aaatcccaag gacttccgga acctcctatc cgtgtatttg gacgcagcct tctttccctg
      541 cttacgggaa ctggatttct ggcaggaagg atggcgacta gaacatgagg atcccaatga
      601 cccccagacg cccttggtct ttaaaggagt tgtctttaac gaaatgaagg gagcatttac
      661 agataacgag aggatgttct cgcagcacgt tcagagccac ctgcttcccg accacacata
      721 ctcagtggtc tccggagggg accccttgtg catcccggac ctcacgtggg agcagctcag
      781 acagttccac gccacacact accaccccag caacgccagg ttcttcactt atggtaattt
      841 tccgctagaa cagcatctga aacaaattca tgaagaagca ctgagtaaat ttcagagaat
      901 caagccacat accacagtgc cagcccagaa gccttgggat aagcctaggg agttccagat
      961 cacgtgtgcc ccggactcgc tggccgcggg ctcctcagag cagacgacca tcagtgtcag
     1021 cttcctcctg ccagacatca ctgacacatt tgaagccttc acgttgagcc ttctgtcttc
     1081 actcttgatc agtggcccca actccccctt ctacaaagcc ctcattgaat ctggactcgg
     1141 cacagacttt tcccctgacg ttgggtacaa tggctgcaca cgggaggcct acttcagcgt
     1201 gggcctgcag ggtatcgcag agaaggacat tcagacagtc caggacctcg tggataggac
     1261 actggatgac atcatcgaga aaggatttga agatgatcga atcgaagcct tacttcataa
     1321 aattgagata cagatgaagc accagtctgt cagctttgga ctcgccctga cgtcttacat
     1381 agcttcctgc tggaatcacg atggggaccc cgtggagctc ctcaagctcg ggagtcaggt
     1441 ggcccagttc cggaagtgcc tggaggaaaa tccaaaattt ttgcaagaaa aagtaaaaca
     1501 gtattttaaa aataatcagc ataagttgac tttatcaatg aaaccagacg acaagtattc
     1561 tgagaaacaa atgcagctgg aaacagaaaa actgaagcaa aaggtcaact ctctttcccc
     1621 ggaagacaag cagcagatct atgaaaaagg tttggaatta caggctcagc aaagccaacc
     1681 tcaggacgtg tcgtgtctgc ccgcgttgaa ggtgtcggac atcgagcccc gcatcccgtt
     1741 cactgatgtg gaggtggctc tggcagctgg ggacacaccc gtccagtact gcacgcagcc
     1801 caccaatggc gtgatctact tcagagcctt ctcgagtctg aacaccctgc ccgaggagct
     1861 ccggccctat gtgcccctct tctgcaacgt cctcaccaag ctgggctgcg gcgcccttga
     1921 ctacagggag ctggcccagc aggtggacct gaagacgggg ggcctggctg ccgcccccca
     1981 cgtgctcccc gacgactcac acctcgacac ctacgagcag ggtgtgctct tttcatcttt
     2041 ctgccttgat agaaacctac cggacatgat gcatctgtgg agtgaaatct ttaacaaccc
     2101 ctgctttgag gccgaggagc acttccgagt gctggtgaag atgacagctc aggagctgtc
     2161 caacggggtc cccgacgcag gccacctcta cgcgtccatc agggcaggca ggacgctggc
     2221 acccgcgggg cacctgcagg agaccttcgg ggggatggac caggtgaggc tcatgaagag
     2281 aatcgcagag atgacggaca tcaagcccat cctgaggaag ctcccactca tcaggaagca
     2341 tcttttgaac tgtgataact tcagatgttc cgtgaatgct actccccagc aaatgtctca
     2401 ggtggagaat tcggtggaca acttcctcag gaccctcagc cggagtaaga aggagcggaa
     2461 gcctgtgcac ccacacgtgg tggagaaacc tgcacctaag ggacctggca ggcactcccc
     2521 attcacgagg aagctggtga cggaccccac cttcaagccc tgcccgatga agacacactt
     2581 ccagctcccg ttcccggtca actacgtagc cgagtgtatc cggactgccc cgtacgcggc
     2641 cccggcccac gccagtctca agatcctggc acgcttgatg acagctaaat gcttgcacac
     2701 ggaaattcga gaaaaaggcg gtgcttacgg tggaggcgcc agactcagct acggcgggat
     2761 cttcacgctc tactcgtaca gggacccgca ttccacggag acgctgcagt ccttcctgag
     2821 ggccatcgac tgggccaagt ctgggaggtt cacgcagcag gacatcaacg aggcaaagct
     2881 ctctgtcttc gccgccgtgg atgctccggt ggctccttca gacaaaggcc tggactgctt
     2941 cctgtacggc ctctcggatg aggcgaagca ggcgcaccgc gagcagctct tcgctgtcag
     3001 ccacgaagat ctggttgacg tgagcaacag gtacctgggc gccgggagga gcacacatgg
     3061 catggctctg ctcggaccag acaatgagag cattgccaag gacccgtcgt ggatagttag
     3121 atagcagatg accctgactc catgggactt aggcctcctg acagctctgt gcttttccga
     3181 ccattttttg caaaacaatt ttgcttggca agtcagacga aaactcttct gtcttgaaga
     3241 aggaataatc atgtactaag tgccagagat gcacagatta tcgtttttaa gactttctga
     3301 tgctatgaat gcttatttta cctattaatc ctagaacatg tattttaaaa ataaaaggtg
     3361 actctgacct a
//
LOCUS       XM_032620327            3361 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pitrilysin metallopeptidase 1 (PITRM1),
            transcript variant X2, mRNA.
ACCESSION   XM_032620327
VERSION     XM_032620327.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3361
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3361
                     /gene="PITRM1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 long SRA reads, 11 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116747780"
     CDS             22..3114
                     /gene="PITRM1"
                     /codon_start=1
                     /product="presequence protease, mitochondrial isoform X2"
                     /protein_id="XP_032476218.1"
                     /db_xref="GeneID:116747780"
                     /translation="MWRSGCRAGVLLRRLNGRASLGAWRWASTTACERALLRYRVGEK
                     IHGFTVSQVTSVPELSLTAVKLSHDSTGAQHLHLAREDRNNLFSVQFRTTPMDSSGAP
                     HVLEHTVLCGSQRYPCRDPFFKMLNRSLSTFMNAFTASDYTLYPFSTQNPKDFRNLLS
                     VYLDAAFFPCLRELDFWQEGWRLEHEDPNDPQTPLVFKGVVFNEMKGAFTDNERMFSQ
                     HVQSHLLPDHTYSVVSGGDPLCIPDLTWEQLRQFHATHYHPSNARFFTYGNFPLEQHL
                     KQIHEEALSKFQRIKPHTTVPAQKPWDKPREFQITCAPDSLAAGSSEQTTISVSFLLP
                     DITDTFEAFTLSLLSSLLISGPNSPFYKALIESGLGTDFSPDVGYNGCTREAYFSVGL
                     QGIAEKDIQTVQDLVDRTLDDIIEKGFEDDRIEALLHKIEIQMKHQSVSFGLALTSYI
                     ASCWNHDGDPVELLKLGSQVAQFRKCLEENPKFLQEKVKQYFKNNQHKLTLSMKPDDK
                     YSEKQMQLETEKLKQKVNSLSPEDKQQIYEKGLELQAQQSQPQDVSCLPALKVSDIEP
                     RIPFTDVEVALAAGDTPVQYCTQPTNGVIYFRAFSSLNTLPEELRPYVPLFCNVLTKL
                     GCGALDYRELAQQVDLKTGGLAAAPHVLPDDSHLDTYEQGVLFSSFCLDRNLPDMMHL
                     WSEIFNNPCFEAEEHFRVLVKMTAQELSNGVPDAGHLYASIRAGRTLAPAGHLQETFG
                     GMDQVRLMKRIAEMTDIKPILRKLPLIRKHLLNCDNFRCSVNATPQQMSQVENSVDNF
                     LRTLSRSKKERKPVHPHVVEKPAPKGPGRHSPFTRKLVTDPTFKPCPMKTHFQLPFPV
                     NYVAECIRTAPYAAPAHASLKILARLMTAKCLHTEIREKGGAYGGGARLSYGGIFTLY
                     SYRDPHSTETLQSFLRAIDWAKSGRFTQQDINEAKLSVFAAVDAPVAPSDKGLDCFLY
                     GLSDEAKQAHREQLFAVSHEDLVDVSNRYLGAGRSTHGMALLGPDNESIAKDPSWIVR
                     "
     misc_feature    133..3027
                     /gene="PITRM1"
                     /note="Zn-dependent peptidase, M16 (insulinase) family
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: Cym1; COG1026"
                     /db_xref="CDD:440649"
ORIGIN      
        1 gcggtgcgcc ggtcacaagc catgtggcgc agcgggtgca gagctggggt tttgctgcgg
       61 aggctgaacg gccgcgccag cctcggagca tggaggtggg cgagcaccac ggcctgtgag
      121 agggcgctgc tgcggtaccg ggtcggagag aagatccacg gcttcactgt cagccaggta
      181 acatctgttc ctgagctgtc cctgaccgcc gtgaaactca gccatgacag cacgggagca
      241 cagcatttgc acctggccag agaggacaga aataacctgt tcagtgtgca gttccgcacc
      301 acccccatgg acagcagcgg tgccccgcac gtcctggagc acacggtcct gtgcggctct
      361 cagaggtacc cctgccggga ccccttcttc aagatgctga acaggtcgct gtctacgttc
      421 atgaacgcct tcacggctag tgattacacc ctgtacccat tttccacaca aaatcccaag
      481 gacttccgga acctcctatc cgtgtatttg gacgcagcct tctttccctg cttacgggaa
      541 ctggatttct ggcaggaagg atggcgacta gaacatgagg atcccaatga cccccagacg
      601 cccttggtct ttaaaggagt tgtctttaac gaaatgaagg gagcatttac agataacgag
      661 aggatgttct cgcagcacgt tcagagccac ctgcttcccg accacacata ctcagtggtc
      721 tccggagggg accccttgtg catcccggac ctcacgtggg agcagctcag acagttccac
      781 gccacacact accaccccag caacgccagg ttcttcactt atggtaattt tccgctagaa
      841 cagcatctga aacaaattca tgaagaagca ctgagtaaat ttcagagaat caagccacat
      901 accacagtgc cagcccagaa gccttgggat aagcctaggg agttccagat cacgtgtgcc
      961 ccggactcgc tggccgcggg ctcctcagag cagacgacca tcagtgtcag cttcctcctg
     1021 ccagacatca ctgacacatt tgaagccttc acgttgagcc ttctgtcttc actcttgatc
     1081 agtggcccca actccccctt ctacaaagcc ctcattgaat ctggactcgg cacagacttt
     1141 tcccctgacg ttgggtacaa tggctgcaca cgggaggcct acttcagcgt gggcctgcag
     1201 ggtatcgcag agaaggacat tcagacagtc caggacctcg tggataggac actggatgac
     1261 atcatcgaga aaggatttga agatgatcga atcgaagcct tacttcataa aattgagata
     1321 cagatgaagc accagtctgt cagctttgga ctcgccctga cgtcttacat agcttcctgc
     1381 tggaatcacg atggggaccc cgtggagctc ctcaagctcg ggagtcaggt ggcccagttc
     1441 cggaagtgcc tggaggaaaa tccaaaattt ttgcaagaaa aagtaaaaca gtattttaaa
     1501 aataatcagc ataagttgac tttatcaatg aaaccagacg acaagtattc tgagaaacaa
     1561 atgcagctgg aaacagaaaa actgaagcaa aaggtcaact ctctttcccc ggaagacaag
     1621 cagcagatct atgaaaaagg tttggaatta caggctcagc aaagccaacc tcaggacgtg
     1681 tcgtgtctgc ccgcgttgaa ggtgtcggac atcgagcccc gcatcccgtt cactgatgtg
     1741 gaggtggctc tggcagctgg ggacacaccc gtccagtact gcacgcagcc caccaatggc
     1801 gtgatctact tcagagcctt ctcgagtctg aacaccctgc ccgaggagct ccggccctat
     1861 gtgcccctct tctgcaacgt cctcaccaag ctgggctgcg gcgcccttga ctacagggag
     1921 ctggcccagc aggtggacct gaagacgggg ggcctggctg ccgcccccca cgtgctcccc
     1981 gacgactcac acctcgacac ctacgagcag ggtgtgctct tttcatcttt ctgccttgat
     2041 agaaacctac cggacatgat gcatctgtgg agtgaaatct ttaacaaccc ctgctttgag
     2101 gccgaggagc acttccgagt gctggtgaag atgacagctc aggagctgtc caacggggtc
     2161 cccgacgcag gccacctcta cgcgtccatc agggcaggca ggacgctggc acccgcgggg
     2221 cacctgcagg agaccttcgg ggggatggac caggtgaggc tcatgaagag aatcgcagag
     2281 atgacggaca tcaagcccat cctgaggaag ctcccactca tcaggaagca tcttttgaac
     2341 tgtgataact tcagatgttc cgtgaatgct actccccagc aaatgtctca ggtggagaat
     2401 tcggtggaca acttcctcag gaccctcagc cggagtaaga aggagcggaa gcctgtgcac
     2461 ccacacgtgg tggagaaacc tgcacctaag ggacctggca ggcactcccc attcacgagg
     2521 aagctggtga cggaccccac cttcaagccc tgcccgatga agacacactt ccagctcccg
     2581 ttcccggtca actacgtagc cgagtgtatc cggactgccc cgtacgcggc cccggcccac
     2641 gccagtctca agatcctggc acgcttgatg acagctaaat gcttgcacac ggaaattcga
     2701 gaaaaaggcg gtgcttacgg tggaggcgcc agactcagct acggcgggat cttcacgctc
     2761 tactcgtaca gggacccgca ttccacggag acgctgcagt ccttcctgag ggccatcgac
     2821 tgggccaagt ctgggaggtt cacgcagcag gacatcaacg aggcaaagct ctctgtcttc
     2881 gccgccgtgg atgctccggt ggctccttca gacaaaggcc tggactgctt cctgtacggc
     2941 ctctcggatg aggcgaagca ggcgcaccgc gagcagctct tcgctgtcag ccacgaagat
     3001 ctggttgacg tgagcaacag gtacctgggc gccgggagga gcacacatgg catggctctg
     3061 ctcggaccag acaatgagag cattgccaag gacccgtcgt ggatagttag atagcagatg
     3121 accctgactc catgggactt aggcctcctg acagctctgt gcttttccga ccattttttg
     3181 caaaacaatt ttgcttggca agtcagacga aaactcttct gtcttgaaga aggaataatc
     3241 atgtactaag tgccagagat gcacagatta tcgtttttaa gactttctga tgctatgaat
     3301 gcttatttta cctattaatc ctagaacatg tattttaaaa ataaaaggtg actctgacct
     3361 a
//
LOCUS       XM_032620337            2710 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphofructokinase, platelet (PFKP),
            transcript variant X1, mRNA.
ACCESSION   XM_032620337
VERSION     XM_032620337.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2710
                     /gene="PFKP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 mRNAs, 15 long SRA reads, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747794"
     CDS             148..2523
                     /gene="PFKP"
                     /codon_start=1
                     /product="ATP-dependent 6-phosphofructokinase, platelet
                     type isoform X1"
                     /protein_id="XP_032476228.1"
                     /db_xref="GeneID:116747794"
                     /translation="MGDHDVSPNPKGSFRKFLEQLSGAGKAIGVLTSGGDAQGMNAAV
                     RAVVRMGIYAGAKVYFIYEGYQGMVDGGSNIVEADWESVSSILQVGGTIIGSARCKDF
                     RSREGRLKAAHNLLQLGITNLCVIGGDGSLTGANIFRKEWSGLLEELAREGKINTEEV
                     QKHGYLNVVGMVGSIDNDFCGTDMTIGTDSALHRIIEVVDAIMTTAQSHQRTFVLEVM
                     GRHCGYLALVSALACGADWVFLPESPPEEGWQENMCIKLSENRARKKRLNIIIVAEGA
                     IDTQNKAITSEQIKELVVTQLGYDTRVTILGHVQRGGTPSAFDRILASRMGVEAVVAL
                     LQATPETPACVVSLSGNQAVRLPLMECVQMTQEVQKAMDERRFKDAVQLRGRSFENNL
                     NTYKRLAIKLPDSQIRKSNCNVGIVNVGAPAAGMNAAVRAAVRVGIADGHKVFAVYDG
                     FEGFAKGQVKEIGWADVGGWTGQGGSILGTKRTLPGKYLEDIAAQMHTHGINALLIIG
                     GFEAYLGLLELSAAREKHKEFCVPMVMVPATVSNNVPGSDFSIGADTALNTITDTCDR
                     IKQSASGTKRRVFIIETMGGYCGYLANMGALAAGADAAYIFEEPFDIRDLQSNVEHLT
                     EKMKTTIQRGLVLRNESCSENYTTDFIYQLYSEEGKGVFDCRKNVLGHMQQGGAPSPF
                     DRNFGTKISARAMQWISTKLKEPAGRGKRFVSDDSVCVLGISKRNLLFQPVAELKEET
                     DFVHRIPKEQWWLKLRPLMKILAKYKASFEVSDAGQLEPMQPRGPEEPATI"
     misc_feature    214..2496
                     /gene="PFKP"
                     /note="Phosphofructokinase, a key regulatory enzyme in
                     glycolysis, catalyzes the phosphorylation of
                     fructose-6-phosphate to fructose-1,6-biphosphate. The
                     members belong to a subfamily of the PFKA family (cd00363)
                     and include eukaryotic ATP-dependent...; Region:
                     Eukaryotic_PFK; cd00764"
                     /db_xref="CDD:238389"
ORIGIN      
        1 cccgcctacc cgcgcccctg agcccgccct tggccgccca ttggcgcgcg ccgcgcgggc
       61 ggggccggcg gttccagtgg cggcggcgcg ggaggggcgc agtgcctgct gagcaccctc
      121 ccgagcgcga tctctggcct gctcgccatg ggcgaccacg acgtctcccc gaaccccaag
      181 ggctccttcc ggaagttcct ggagcaactc tccggtgccg gcaaagccat aggcgtgctg
      241 accagcggcg gggatgccca aggtatgaat gctgctgtcc gagctgtcgt gcgcatggga
      301 atatacgcgg gggccaaagt gtactttatc tatgagggtt accagggcat ggtggatggt
      361 ggcagcaaca ttgtggaagc tgactgggaa agtgtctcca gcatcctgca agtgggaggg
      421 accattattg gcagcgcccg ttgcaaggac ttccgttctc gggaaggccg cttgaaggct
      481 gctcataact tgcttcagct gggcatcacc aacctgtgtg tgatcggcgg ggacgggagt
      541 ctcaccgggg ccaatatctt ccggaaggag tggagtgggc tgctggagga gctggcccgg
      601 gagggcaaga tcaacacgga ggaggtgcag aagcacgggt acctcaacgt ggtggggatg
      661 gtgggctcca tcgacaacga cttctgcggc accgacatga ccatcggcac ggactctgcc
      721 ctgcaccgca tcatcgaggt ggtggacgcc atcatgacga ctgcccagag ccaccagagg
      781 accttcgtcc tggaagtcat ggggaggcac tgcgggtacc tggccctggt gagtgcgttg
      841 gcctgtgggg ccgactgggt gttccttcca gaatctccac cagaagaagg ttggcaggaa
      901 aacatgtgca tcaaactctc agagaaccgt gcccggaaaa aaagactgaa catcatcatt
      961 gtggctgaag gagccattga cacccaaaac aaagccatca cctctgagca aatcaaggag
     1021 ctcgtggtca cacagctggg ttatgacact cgggtgacca tccttggaca cgtgcagaga
     1081 ggtgggacgc cttcagcctt tgacaggatt ttggccagcc gcatgggggt ggaggccgtg
     1141 gtcgccctcc tccaggccac ccccgagacc ccggcctgcg tggtgtcgct gagcgggaac
     1201 caggcggtgc ggctgccact gatggaatgc gtgcagatga cccaggaagt acaaaaggcg
     1261 atggatgaga ggagatttaa ggacgctgtg caactccgag gaaggagctt tgagaacaac
     1321 ctgaacacct acaagcggct tgccatcaag ctgccagact cccagatccg taagagcaac
     1381 tgcaatgtgg gcatcgtgaa cgtgggtgcg cccgccgccg gcatgaacgc ggctgtgcgc
     1441 gcggccgtgc gcgtgggcat cgccgacgga cacaaggtgt tcgctgtgta cgacggcttt
     1501 gagggcttcg ccaaaggcca ggtaaaggaa attggctggg cagatgtcgg cggctggacc
     1561 ggccagggcg gctccattct tgggacaaaa cgcaccctcc ccgggaagta cctggaggac
     1621 atcgctgctc agatgcatac ccatggcatc aacgcgctct tgatcatcgg tggattcgag
     1681 gcctacctgg gactgttgga gctgtcggcc gcccgggaga agcacaagga gttctgcgtc
     1741 cccatggtca tggttcccgc caccgtctcc aacaacgtgc ccggctccga tttcagcatc
     1801 ggggcagaca ccgccctcaa caccatcacc gacacgtgtg accgcatcaa gcagtcggcc
     1861 agcgggacca agcgccgtgt cttcatcatc gagaccatgg ggggctactg cggctacctg
     1921 gccaacatgg gggcgctggc tgccggcgcc gatgccgcct acatcttcga ggagcctttc
     1981 gacatccggg acctgcagtc caacgtggag cacctgacgg agaagatgaa gaccaccatc
     2041 cagaggggac tcgtgctcag gaacgagagc tgcagtgaga actacaccac cgacttcatc
     2101 taccagctct actcagagga gggcaagggg gtgttcgact gcaggaagaa cgtgctgggt
     2161 cacatgcagc agggtggggc gccttctcca tttgatagaa actttggaac caaaatctcc
     2221 gccagagcca tgcagtggat cagcacgaag ctgaaggagc cggcggggag aggaaaaaga
     2281 tttgtaagtg acgattccgt ctgtgtgctg ggaataagca aaagaaacct gctcttccag
     2341 cccgtggccg agctgaagga ggagacggac ttcgtgcaca ggatccccaa ggagcagtgg
     2401 tggctgaagc tgcggcccct catgaagatc ctggccaagt acaaagccag cttcgaggtg
     2461 tcggacgcgg gccagctgga gcccatgcag cctcgcgggc ccgaggagcc tgccaccatc
     2521 tagatgcccc acctgcccat tttgtaacgt ttaagttatt tatgagcact ttacgtgagc
     2581 atcgtccaag tgaaccctga gcgtggccca ccttccccgt cccctggcac agggtgtcag
     2641 ctgtgctgtc ttgtgtgtcc tgcttcacaa actgtggctc ccgcagaatt aaatgtttgc
     2701 taaaagccaa
//
LOCUS       XM_032620342            2514 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus phosphofructokinase, platelet (PFKP),
            transcript variant X2, mRNA.
ACCESSION   XM_032620342
VERSION     XM_032620342.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2514
                     /gene="PFKP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 14 long SRA reads, 13
                     Proteins, and 93% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116747794"
     CDS             153..2327
                     /gene="PFKP"
                     /codon_start=1
                     /product="ATP-dependent 6-phosphofructokinase, platelet
                     type isoform X2"
                     /protein_id="XP_032476233.1"
                     /db_xref="GeneID:116747794"
                     /translation="MVDGGSNIVEADWESVSSILQVGGTIIGSARCKDFRSREGRLKA
                     AHNLLQLGITNLCVIGGDGSLTGANIFRKEWSGLLEELAREGKINTEEVQKHGYLNVV
                     GMVGSIDNDFCGTDMTIGTDSALHRIIEVVDAIMTTAQSHQRTFVLEVMGRHCGYLAL
                     VSALACGADWVFLPESPPEEGWQENMCIKLSENRARKKRLNIIIVAEGAIDTQNKAIT
                     SEQIKELVVTQLGYDTRVTILGHVQRGGTPSAFDRILASRMGVEAVVALLQATPETPA
                     CVVSLSGNQAVRLPLMECVQMTQEVQKAMDERRFKDAVQLRGRSFENNLNTYKRLAIK
                     LPDSQIRKSNCNVGIVNVGAPAAGMNAAVRAAVRVGIADGHKVFAVYDGFEGFAKGQV
                     KEIGWADVGGWTGQGGSILGTKRTLPGKYLEDIAAQMHTHGINALLIIGGFEAYLGLL
                     ELSAAREKHKEFCVPMVMVPATVSNNVPGSDFSIGADTALNTITDTCDRIKQSASGTK
                     RRVFIIETMGGYCGYLANMGALAAGADAAYIFEEPFDIRDLQSNVEHLTEKMKTTIQR
                     GLVLRNESCSENYTTDFIYQLYSEEGKGVFDCRKNVLGHMQQGGAPSPFDRNFGTKIS
                     ARAMQWISTKLKEPAGRGKRFVSDDSVCVLGISKRNLLFQPVAELKEETDFVHRIPKE
                     QWWLKLRPLMKILAKYKASFEVSDAGQLEPMQPRGPEEPATI"
     misc_feature    153..2300
                     /gene="PFKP"
                     /note="Phosphofructokinase, a key regulatory enzyme in
                     glycolysis, catalyzes the phosphorylation of
                     fructose-6-phosphate to fructose-1,6-biphosphate. The
                     members belong to a subfamily of the PFKA family (cd00363)
                     and include eukaryotic ATP-dependent...; Region:
                     Eukaryotic_PFK; cd00764"
                     /db_xref="CDD:238389"
ORIGIN      
        1 gtggcgcagg atccttcttg atcttggaca atctgtgagg agaatgagat gcatttagag
       61 ttgaaatgta attgtctttg gtcaaatgtg catcgtcgtc cagaatcccc tcagtgtagt
      121 aaactggcac tagttggaag ggttaccagg gcatggtgga tggtggcagc aacattgtgg
      181 aagctgactg ggaaagtgtc tccagcatcc tgcaagtggg agggaccatt attggcagcg
      241 cccgttgcaa ggacttccgt tctcgggaag gccgcttgaa ggctgctcat aacttgcttc
      301 agctgggcat caccaacctg tgtgtgatcg gcggggacgg gagtctcacc ggggccaata
      361 tcttccggaa ggagtggagt gggctgctgg aggagctggc ccgggagggc aagatcaaca
      421 cggaggaggt gcagaagcac gggtacctca acgtggtggg gatggtgggc tccatcgaca
      481 acgacttctg cggcaccgac atgaccatcg gcacggactc tgccctgcac cgcatcatcg
      541 aggtggtgga cgccatcatg acgactgccc agagccacca gaggaccttc gtcctggaag
      601 tcatggggag gcactgcggg tacctggccc tggtgagtgc gttggcctgt ggggccgact
      661 gggtgttcct tccagaatct ccaccagaag aaggttggca ggaaaacatg tgcatcaaac
      721 tctcagagaa ccgtgcccgg aaaaaaagac tgaacatcat cattgtggct gaaggagcca
      781 ttgacaccca aaacaaagcc atcacctctg agcaaatcaa ggagctcgtg gtcacacagc
      841 tgggttatga cactcgggtg accatccttg gacacgtgca gagaggtggg acgccttcag
      901 cctttgacag gattttggcc agccgcatgg gggtggaggc cgtggtcgcc ctcctccagg
      961 ccacccccga gaccccggcc tgcgtggtgt cgctgagcgg gaaccaggcg gtgcggctgc
     1021 cactgatgga atgcgtgcag atgacccagg aagtacaaaa ggcgatggat gagaggagat
     1081 ttaaggacgc tgtgcaactc cgaggaagga gctttgagaa caacctgaac acctacaagc
     1141 ggcttgccat caagctgcca gactcccaga tccgtaagag caactgcaat gtgggcatcg
     1201 tgaacgtggg tgcgcccgcc gccggcatga acgcggctgt gcgcgcggcc gtgcgcgtgg
     1261 gcatcgccga cggacacaag gtgttcgctg tgtacgacgg ctttgagggc ttcgccaaag
     1321 gccaggtaaa ggaaattggc tgggcagatg tcggcggctg gaccggccag ggcggctcca
     1381 ttcttgggac aaaacgcacc ctccccggga agtacctgga ggacatcgct gctcagatgc
     1441 atacccatgg catcaacgcg ctcttgatca tcggtggatt cgaggcctac ctgggactgt
     1501 tggagctgtc ggccgcccgg gagaagcaca aggagttctg cgtccccatg gtcatggttc
     1561 ccgccaccgt ctccaacaac gtgcccggct ccgatttcag catcggggca gacaccgccc
     1621 tcaacaccat caccgacacg tgtgaccgca tcaagcagtc ggccagcggg accaagcgcc
     1681 gtgtcttcat catcgagacc atggggggct actgcggcta cctggccaac atgggggcgc
     1741 tggctgccgg cgccgatgcc gcctacatct tcgaggagcc tttcgacatc cgggacctgc
     1801 agtccaacgt ggagcacctg acggagaaga tgaagaccac catccagagg ggactcgtgc
     1861 tcaggaacga gagctgcagt gagaactaca ccaccgactt catctaccag ctctactcag
     1921 aggagggcaa gggggtgttc gactgcagga agaacgtgct gggtcacatg cagcagggtg
     1981 gggcgccttc tccatttgat agaaactttg gaaccaaaat ctccgccaga gccatgcagt
     2041 ggatcagcac gaagctgaag gagccggcgg ggagaggaaa aagatttgta agtgacgatt
     2101 ccgtctgtgt gctgggaata agcaaaagaa acctgctctt ccagcccgtg gccgagctga
     2161 aggaggagac ggacttcgtg cacaggatcc ccaaggagca gtggtggctg aagctgcggc
     2221 ccctcatgaa gatcctggcc aagtacaaag ccagcttcga ggtgtcggac gcgggccagc
     2281 tggagcccat gcagcctcgc gggcccgagg agcctgccac catctagatg ccccacctgc
     2341 ccattttgta acgtttaagt tatttatgag cactttacgt gagcatcgtc caagtgaacc
     2401 ctgagcgtgg cccaccttcc ccgtcccctg gcacagggtg tcagctgtgc tgtcttgtgt
     2461 gtcctgcttc acaaactgtg gctcccgcag aattaaatgt ttgctaaaag ccaa
//
LOCUS       XM_032620357            5146 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytosolic phospholipase A2 beta
            (LOC116747819), transcript variant X1, mRNA.
ACCESSION   XM_032620357
VERSION     XM_032620357.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5146
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5146
                     /gene="LOC116747819"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 3
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747819"
     CDS             1118..3763
                     /gene="LOC116747819"
                     /codon_start=1
                     /product="cytosolic phospholipase A2 beta isoform X1"
                     /protein_id="XP_032476248.1"
                     /db_xref="GeneID:116747819"
                     /translation="MIGRTRRRQAGLGVASQETGAQVRQQPVVEEEWGSGAAPPHQCR
                     DLGRVTASRPQCAVCKTEITIVPTSWRVGDGICKDGTSLAQRKGSIKGGYDSRAARHS
                     FLPRTLCLMALAKVPGTCLLTIHVLQAHGLPSKDLVTPSDCYVTLWLPSVSSHQVQTR
                     VVKNSRNPIWNQSFHFRIHTQLKNIVQFKVFDQDLLTEDDPLLLVLFDVGTLRAGESR
                     RESFSLNPQGKEQLEVEFRLQNLTDCAERLVSNGILVARELSCLCVRLEKAGGQQGSE
                     GRVQLAVPGSCEGPQEASVGAGSFGFRWPACWEPEPGVHPQDEPQEKLKVPLRALPSD
                     QEPLMKVELKKEEGPRELAVRLDCGPCAEERAFLSRRKQVVAKALKQALQLDGDLQED
                     EIPVVAVAATGGGIRAMTSLYGQLAGLKELGLLDCISCITGASGSTWALANLYEDPEW
                     SQKDLAGPIESLKTQVTKSKLGVVAPSQLWRYQQELAERARLGHPPCFTTLWALINEA
                     LLHDEPHDHKLSDQREALSRGQNPLPIYCALNTKERNLTTFEFGEWCEFSPYEVGFPR
                     YGAFIPSELFGSEFFMGRLTKRLPESRICFLEGIWSNVYAASLQDSLYWSSEPSQFWD
                     RWAQAQASLDKEQVPLLNIEEPPTVASRIAEFFTDLLTRRPLAQATHNFLRGLSFHKD
                     YFQHPHFSAWKATKLDGLPNQLTPAEPFLCLLDVGFFVNTSCPPLLRPTRDVDLILSL
                     DYNLHGAFEQLQILDRFCQEQGIPFPSISPSPEEQRQPRECHLFSDPARPDAPAVLHF
                     PLVNASFREYSAPGVRRTAEAQEAGEVNLSSSDSPYHYLKVTYSREDMDKLLRLTHYN
                     ICNNREQLLEALREAVRRRKQRRAE"
     misc_feature    1478..1837
                     /gene="LOC116747819"
                     /note="C2 domain present in cytosolic PhosphoLipase A2
                     (cPLA2); Region: C2_cPLA2; cd04036"
                     /db_xref="CDD:176001"
     misc_feature    order(1532..1534,1541..1543,1607..1609,1691..1693,
                     1697..1699)
                     /gene="LOC116747819"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176001"
     misc_feature    1898..2164
                     /gene="LOC116747819"
                     /note="Cytosolic phospholipases A2 C2-domain; Region:
                     cPLA2_C2; pfam18695"
                     /db_xref="CDD:465834"
     misc_feature    2144..3754
                     /gene="LOC116747819"
                     /note="Group IVB, IVD, IVE, and IVF cytosolic
                     phospholipase A2; catalytic domain; Ca-dependent; Region:
                     cPLA2_Grp-IVB-IVD-IVE-IVF; cd07201"
                     /db_xref="CDD:132840"
     misc_feature    order(2327..2332,2336..2338,2420..2422,3260..3262)
                     /gene="LOC116747819"
                     /note="active site"
                     /db_xref="CDD:132840"
     misc_feature    2414..2428
                     /gene="LOC116747819"
                     /note="nucleophile elbow; other site"
                     /db_xref="CDD:132840"
     misc_feature    order(2948..2950,3116..3118)
                     /gene="LOC116747819"
                     /note="flexible lid region; other site"
                     /db_xref="CDD:132840"
ORIGIN      
        1 agagagggag ggaggggcgg tggcggcgtc atcatggcgg acgcggcttt ggacgctgtg
       61 cgaagggagt tacgggagtt cccggctgcg gcaagggagc tcagcgtgcc tcctgctgtg
      121 ccctacctgg acaagccccc gggtccactc cacttctacc gtgactgggt ctgccccaac
      181 aggccctgca tcatccgaaa tgccctgcag cactggccag ccctccagaa gtggtccctc
      241 ccctacctca gagccacagc gggctccgtg gaggtgagcg tggcggtgac cccagatggt
      301 tacgcggatg ccgtgcgagg ggaccggttt gtgatgcctg ccgagcgccg cctgcccctg
      361 agctgtgtgc tggacgtgct ggagggccga gcacaacacc ccggggtcct ctacgtgcag
      421 aagcagtgct ccaacctcct caccgagctg ccccagctgt tgcctgatct ggagccccac
      481 gtgccctggg cctctgaggc gctgggaaag atgcctgatg ctgtgaactt ctggctgggg
      541 gaggcagctg cagtgacatc attgcataag gaccactatg agaacctata ctgtgtggtc
      601 tcgggagaga aacacttcct gctgcatcca cccagcgacc ggcccttcat tccctatgag
      661 ctgtacacac cggcaaccta ccagctaacc gaagagggct cattcaagat ggtggacgaa
      721 gaggccatgg agaaggtgcc ttggatccca ctggacccct tagctccaga tctggccgag
      781 taccccagtt acagtcaggc ccaggccctt cactgcaccg tgcagactgg cgagatgctc
      841 tatctgcccg ccctgtggtt ccaccacgtc cagcagtccc atggctgcat ggccgtgaat
      901 ttctggtacg acatggagta tgacctcaag tacagttact tccagctgct cgactccctc
      961 actaaggtct caggcctcaa ctgaccgagc cctggtgaac atcgccaagg acgacttacg
     1021 gaaaaggccg cgcccctcct gagccagtca cctcgagagg caatctggag tcagaggtgc
     1081 tggctgctgg cccagctggg cttagggtca gcttcagatg atcgggagga ccaggaggcg
     1141 ccaggcaggt ctgggtgtgg cctcccagga aactggcgca caggtgaggc agcagcctgt
     1201 tgtggaagag gagtggggtt caggtgcggc accgcctcac cagtgccgtg accttgggcg
     1261 agttactgcc tcacggcctc agtgtgctgt ctgtaaaaca gagataacga tcgttcctac
     1321 ctcatggcgt gttggcgatg gtatctgtaa ggatggcacc agtctggcgc agaggaaggg
     1381 ttcaataaaa ggcggctatg attcacgtgc tgcccgccat tccttcctcc cgaggactct
     1441 ctgcctcatg gctctggcaa aggtgcctgg gacctgcttg ctcaccattc atgtcctgca
     1501 ggcccatggc ctgccctcca aggacctagt gaccccctct gactgctatg tgactctctg
     1561 gctgccctcg gtctccagcc accaggtcca gacgcgcgtg gtcaagaaca gcagaaaccc
     1621 catctggaat cagagctttc acttccgaat ccacacccag ctcaagaaca tcgtgcagtt
     1681 caaagtcttt gaccaggacc ttctgaccga ggatgaccct ctgttgttgg tgctgtttga
     1741 cgtggggact ttgcgggctg gggagtcccg gcgtgagagc ttctcactga accctcaggg
     1801 taaggagcag ctggaagttg aatttcggct gcagaatctg accgactgtg ctgagcgcct
     1861 tgtcagtaat ggcatcctgg tggcccggga gctctcctgc ttgtgtgttc gactggagaa
     1921 ggccgggggc cagcaggggt cggagggcag agttcagctc gcggttcccg ggtcctgtga
     1981 gggtccgcag gaggcctccg tgggcgccgg ctccttcggc ttccgttggc cggcctgctg
     2041 ggagccggag ccgggtgttc acccgcagga tgagccccaa gagaagctga aggtgcctct
     2101 gagggcactg ccctctgacc aggagcccct gatgaaggtg gagctgaaaa aagaagaagg
     2161 accgagagag ctggcggtgc ggctggactg cgggccctgt gccgaggagc gggccttcct
     2221 gagcaggagg aagcaggtgg tggccaaggc cctgaagcag gccctgcagc tggatggaga
     2281 cctgcaggag gatgagatcc cagtggtagc tgttgcggcc actggtggtg ggatccgggc
     2341 catgacttcc ctgtatgggc agctggctgg cctgaaggag ctgggcctct tggattgcat
     2401 ctcctgcatc acaggggcct cgggctccac ctgggctttg gccaacctct atgaggaccc
     2461 agagtggtct cagaaggacc tggcagggcc catcgaatca ctgaagacgc aggtgaccaa
     2521 gagcaagctg ggcgtggtgg cccccagcca gctgtggcgg taccagcagg agctggctga
     2581 acgtgcacgc ctgggccacc cgccctgctt caccaccctg tgggccctca tcaacgaggc
     2641 gctgttgcat gacgagcctc atgaccacaa actctcagac cagcgggagg ccctgagccg
     2701 tggccagaac cctctgccca tctactgtgc tctcaacacc aaagaacgga acctgactac
     2761 ttttgaattt ggggagtggt gtgagttctc cccctatgag gtcggctttc ccaggtacgg
     2821 cgccttcatc ccctctgagc tcttcggctc cgagttcttc atggggcgcc tgacaaagcg
     2881 gcttcctgag tcccgcatct gcttcctgga aggcatctgg agcaacgtgt acgcagccag
     2941 cctccaggac agcttgtatt ggtcctctga gcccagccag ttctgggacc gctgggcaca
     3001 ggctcaggcc agcctggaca aggagcaggt cccccttctg aatatagaag agcctcccac
     3061 agtggccagc aggatagctg agttcttcac tgaccttctg acacggcgtc cacttgccca
     3121 ggccacccac aatttcctcc gtggcctctc tttccacaag gactatttcc agcatcctca
     3181 cttctctgcc tggaaagcca ccaaactgga tggcctcccc aaccagctga cacctgcaga
     3241 acccttcctt tgcctgttgg atgttggctt ctttgtcaac accagctgcc cacccctcct
     3301 gcggcccaca cgggacgtgg acctcatcct gtcgctggat tacaacctcc atggagcctt
     3361 tgagcagctg cagatcctgg atcggttctg ccaggagcag ggcatcccat tcccatccat
     3421 ctcacccagc cccgaggagc agcgccagcc ccgggagtgc catctcttct cggaccctgc
     3481 ccgccctgac gcccctgctg tgctgcactt cccgctggtc aacgcctcct tccgggagta
     3541 ctcagcccca ggggtccggc ggacggccga ggcgcaggag gccggggagg tgaacctgtc
     3601 ttcatccgac tccccctacc actacttgaa ggtgacttac agccgggagg acatggacaa
     3661 gctgctccgc ctgacgcatt acaacatctg caacaaccgg gagcagctgc tggaggccct
     3721 gcgtgaggcc gtgcggcggc gcaagcagcg ccgggccgag tgatgggcgg gagggtgcca
     3781 cgccccagcc ccacggcccc tgactttttc aggctccctt cttggccgcc ttgctgctcc
     3841 ggttgagttg gggtggagac cgtcgtcacc aagttcagag cctctggcag tttggacggc
     3901 ccagttgtgg tcgccagccc tctgaggggc tcacgaaggt gcctagcacc acccagacgt
     3961 ggcactgaag ccaccagcac ccctgccacg gacaccctgg ggtaggttga gggttttaaa
     4021 caggggctgg ggcctcgtct ccatgatgtg gcagcggggg taagtggggt ggtctgggcc
     4081 agatttgtgt atgcacccaa aaccccgtga cctgagtgtc ctttcccttc cttgctacct
     4141 tgattagctg tacagagtga aagtagagca ttttatgtat tacagaggcc cgtacaaacg
     4201 tgaggcatta tggagattac tgtcattgct tccaagaagg gacacgtcat cccacctctt
     4261 ggttacccag ggcaaggact ggtttaggaa acaaaacctc tccgcaggca ccttatagag
     4321 ctggcaagtc agcctgggct tcccctgaag agcaggctgt gagctcatgg cagtgtctac
     4381 tccactctgg cccactctct ccaagcagag aggtggccag tttagcctgg ggggtgggtc
     4441 ttgctgctgc agccctggcc ctgcccaggt gacttgcagg cagtgacagc cagcacccct
     4501 gtcttcctca cccagggact caggcaaagg gctgcttcct gtcccatgac tgataggggt
     4561 gggccagacc tgggatcaga tgcaccaaag acagaccagt gctaacggcg tgacttcagc
     4621 aagctcggac cttggtgggg cctgtctcct aaccgtctat tccagatgtt ggtcccaggg
     4681 gtctgatagc tgggtctcct ggtccccttg agggtgtcct cgcttgtagc cctgaggttt
     4741 ggtgccacct acaggttcgc ttcagggccc agacctgttg ggagaacagg gaggtggagt
     4801 gaatttaggg cctagcttcc ccggaatctt ctccaagcac tggtgcccca ggcctctgca
     4861 cctcctccta acattgatgt gggcggtggc tactgggagg cagctgcagg agggaccatg
     4921 atgtgcgggg ggcatgggag atgactggtt cccatgatgc aactcactac ctctgtgttc
     4981 cctgggcatg tggcgggagg cacagagcag aagacatggc tgctctgatg accttagaag
     5041 ccaccatgtc ctggagaggg cctgttgact cagcagtacc tcatctgaat cataaattgg
     5101 aagctgtggg tcctgcagga gtggataatt ataccagaca ccacga
//
LOCUS       XM_032620365            5143 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytosolic phospholipase A2 beta
            (LOC116747819), transcript variant X2, mRNA.
ACCESSION   XM_032620365
VERSION     XM_032620365.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5143
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5143
                     /gene="LOC116747819"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 1
                     Protein, and 97% coverage of the annotated genomic feature
                     by RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116747819"
     CDS             1118..3760
                     /gene="LOC116747819"
                     /codon_start=1
                     /product="cytosolic phospholipase A2 beta isoform X2"
                     /protein_id="XP_032476256.1"
                     /db_xref="GeneID:116747819"
                     /translation="MIGRTRRRQAGLGVASQETGAQVRQQPVVEEEWGSGAAPPHQCR
                     DLGRVTASRPQCAVCKTEITIVPTSWRVGDGICKDGTSLAQRKGSIKGGYDSRAARHS
                     FLPRTLCLMALAKVPGTCLLTIHVLQAHGLPSKDLVTPSDCYVTLWLPSVSSHQVQTR
                     VVKNSRNPIWNQSFHFRIHTQLKNIVQFKVFDQDLLTEDDPLLLVLFDVGTLRAGESR
                     RESFSLNPQGKEQLEVEFRLQNLTDCAERLVSNGILVARELSCLCVRLEKAGGQQGSE
                     GRVQLAVPGSCEGPQEASVGAGSFGFRWPACWEPEPGVHPQDEPQEKLKVPLRALPSD
                     QEPLMKVELKKEEGPRELAVRLDCGPCAEERAFLSRRKQVVAKALKQALQLDGDLQED
                     EIPVVAVAATGGGIRAMTSLYGQLAGLKELGLLDCISCITGASGSTWALANLYEDPEW
                     SQKDLAGPIESLKTQVTKSKLGVVAPSQLWRYQQELAERARLGHPPCFTTLWALINEA
                     LLHDEPHDHKLSDQREALSRGQNPLPIYCALNTKERNLTTFEFGEWCEFSPYEVGFPR
                     YGAFIPSELFGSEFFMGRLTKRLPESRICFLEGIWSNVYAASLQDSLYWSSEPSQFWD
                     RWAQAQASLDKEQVPLLNIEEPPTVASRIAEFFTDLLTRRPLAQATHNFLRGLSFHKD
                     YFQHPHFSAWKATKLDGLPNQLTPAEPFLCLLDVGFFVNTSCPPLLRPTRDVDLILSL
                     DYNLHGAFELQILDRFCQEQGIPFPSISPSPEEQRQPRECHLFSDPARPDAPAVLHFP
                     LVNASFREYSAPGVRRTAEAQEAGEVNLSSSDSPYHYLKVTYSREDMDKLLRLTHYNI
                     CNNREQLLEALREAVRRRKQRRAE"
     misc_feature    1478..1837
                     /gene="LOC116747819"
                     /note="C2 domain present in cytosolic PhosphoLipase A2
                     (cPLA2); Region: C2_cPLA2; cd04036"
                     /db_xref="CDD:176001"
     misc_feature    order(1532..1534,1541..1543,1607..1609,1691..1693,
                     1697..1699)
                     /gene="LOC116747819"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176001"
     misc_feature    1898..2164
                     /gene="LOC116747819"
                     /note="Cytosolic phospholipases A2 C2-domain; Region:
                     cPLA2_C2; pfam18695"
                     /db_xref="CDD:465834"
     misc_feature    2144..3751
                     /gene="LOC116747819"
                     /note="Group IVB, IVD, IVE, and IVF cytosolic
                     phospholipase A2; catalytic domain; Ca-dependent; Region:
                     cPLA2_Grp-IVB-IVD-IVE-IVF; cd07201"
                     /db_xref="CDD:132840"
     misc_feature    order(2327..2332,2336..2338,2420..2422,3260..3262)
                     /gene="LOC116747819"
                     /note="active site"
                     /db_xref="CDD:132840"
     misc_feature    2414..2428
                     /gene="LOC116747819"
                     /note="nucleophile elbow; other site"
                     /db_xref="CDD:132840"
     misc_feature    order(2948..2950,3116..3118)
                     /gene="LOC116747819"
                     /note="flexible lid region; other site"
                     /db_xref="CDD:132840"
ORIGIN      
        1 agagagggag ggaggggcgg tggcggcgtc atcatggcgg acgcggcttt ggacgctgtg
       61 cgaagggagt tacgggagtt cccggctgcg gcaagggagc tcagcgtgcc tcctgctgtg
      121 ccctacctgg acaagccccc gggtccactc cacttctacc gtgactgggt ctgccccaac
      181 aggccctgca tcatccgaaa tgccctgcag cactggccag ccctccagaa gtggtccctc
      241 ccctacctca gagccacagc gggctccgtg gaggtgagcg tggcggtgac cccagatggt
      301 tacgcggatg ccgtgcgagg ggaccggttt gtgatgcctg ccgagcgccg cctgcccctg
      361 agctgtgtgc tggacgtgct ggagggccga gcacaacacc ccggggtcct ctacgtgcag
      421 aagcagtgct ccaacctcct caccgagctg ccccagctgt tgcctgatct ggagccccac
      481 gtgccctggg cctctgaggc gctgggaaag atgcctgatg ctgtgaactt ctggctgggg
      541 gaggcagctg cagtgacatc attgcataag gaccactatg agaacctata ctgtgtggtc
      601 tcgggagaga aacacttcct gctgcatcca cccagcgacc ggcccttcat tccctatgag
      661 ctgtacacac cggcaaccta ccagctaacc gaagagggct cattcaagat ggtggacgaa
      721 gaggccatgg agaaggtgcc ttggatccca ctggacccct tagctccaga tctggccgag
      781 taccccagtt acagtcaggc ccaggccctt cactgcaccg tgcagactgg cgagatgctc
      841 tatctgcccg ccctgtggtt ccaccacgtc cagcagtccc atggctgcat ggccgtgaat
      901 ttctggtacg acatggagta tgacctcaag tacagttact tccagctgct cgactccctc
      961 actaaggtct caggcctcaa ctgaccgagc cctggtgaac atcgccaagg acgacttacg
     1021 gaaaaggccg cgcccctcct gagccagtca cctcgagagg caatctggag tcagaggtgc
     1081 tggctgctgg cccagctggg cttagggtca gcttcagatg atcgggagga ccaggaggcg
     1141 ccaggcaggt ctgggtgtgg cctcccagga aactggcgca caggtgaggc agcagcctgt
     1201 tgtggaagag gagtggggtt caggtgcggc accgcctcac cagtgccgtg accttgggcg
     1261 agttactgcc tcacggcctc agtgtgctgt ctgtaaaaca gagataacga tcgttcctac
     1321 ctcatggcgt gttggcgatg gtatctgtaa ggatggcacc agtctggcgc agaggaaggg
     1381 ttcaataaaa ggcggctatg attcacgtgc tgcccgccat tccttcctcc cgaggactct
     1441 ctgcctcatg gctctggcaa aggtgcctgg gacctgcttg ctcaccattc atgtcctgca
     1501 ggcccatggc ctgccctcca aggacctagt gaccccctct gactgctatg tgactctctg
     1561 gctgccctcg gtctccagcc accaggtcca gacgcgcgtg gtcaagaaca gcagaaaccc
     1621 catctggaat cagagctttc acttccgaat ccacacccag ctcaagaaca tcgtgcagtt
     1681 caaagtcttt gaccaggacc ttctgaccga ggatgaccct ctgttgttgg tgctgtttga
     1741 cgtggggact ttgcgggctg gggagtcccg gcgtgagagc ttctcactga accctcaggg
     1801 taaggagcag ctggaagttg aatttcggct gcagaatctg accgactgtg ctgagcgcct
     1861 tgtcagtaat ggcatcctgg tggcccggga gctctcctgc ttgtgtgttc gactggagaa
     1921 ggccgggggc cagcaggggt cggagggcag agttcagctc gcggttcccg ggtcctgtga
     1981 gggtccgcag gaggcctccg tgggcgccgg ctccttcggc ttccgttggc cggcctgctg
     2041 ggagccggag ccgggtgttc acccgcagga tgagccccaa gagaagctga aggtgcctct
     2101 gagggcactg ccctctgacc aggagcccct gatgaaggtg gagctgaaaa aagaagaagg
     2161 accgagagag ctggcggtgc ggctggactg cgggccctgt gccgaggagc gggccttcct
     2221 gagcaggagg aagcaggtgg tggccaaggc cctgaagcag gccctgcagc tggatggaga
     2281 cctgcaggag gatgagatcc cagtggtagc tgttgcggcc actggtggtg ggatccgggc
     2341 catgacttcc ctgtatgggc agctggctgg cctgaaggag ctgggcctct tggattgcat
     2401 ctcctgcatc acaggggcct cgggctccac ctgggctttg gccaacctct atgaggaccc
     2461 agagtggtct cagaaggacc tggcagggcc catcgaatca ctgaagacgc aggtgaccaa
     2521 gagcaagctg ggcgtggtgg cccccagcca gctgtggcgg taccagcagg agctggctga
     2581 acgtgcacgc ctgggccacc cgccctgctt caccaccctg tgggccctca tcaacgaggc
     2641 gctgttgcat gacgagcctc atgaccacaa actctcagac cagcgggagg ccctgagccg
     2701 tggccagaac cctctgccca tctactgtgc tctcaacacc aaagaacgga acctgactac
     2761 ttttgaattt ggggagtggt gtgagttctc cccctatgag gtcggctttc ccaggtacgg
     2821 cgccttcatc ccctctgagc tcttcggctc cgagttcttc atggggcgcc tgacaaagcg
     2881 gcttcctgag tcccgcatct gcttcctgga aggcatctgg agcaacgtgt acgcagccag
     2941 cctccaggac agcttgtatt ggtcctctga gcccagccag ttctgggacc gctgggcaca
     3001 ggctcaggcc agcctggaca aggagcaggt cccccttctg aatatagaag agcctcccac
     3061 agtggccagc aggatagctg agttcttcac tgaccttctg acacggcgtc cacttgccca
     3121 ggccacccac aatttcctcc gtggcctctc tttccacaag gactatttcc agcatcctca
     3181 cttctctgcc tggaaagcca ccaaactgga tggcctcccc aaccagctga cacctgcaga
     3241 acccttcctt tgcctgttgg atgttggctt ctttgtcaac accagctgcc cacccctcct
     3301 gcggcccaca cgggacgtgg acctcatcct gtcgctggat tacaacctcc atggagcctt
     3361 tgagctgcag atcctggatc ggttctgcca ggagcagggc atcccattcc catccatctc
     3421 acccagcccc gaggagcagc gccagccccg ggagtgccat ctcttctcgg accctgcccg
     3481 ccctgacgcc cctgctgtgc tgcacttccc gctggtcaac gcctccttcc gggagtactc
     3541 agccccaggg gtccggcgga cggccgaggc gcaggaggcc ggggaggtga acctgtcttc
     3601 atccgactcc ccctaccact acttgaaggt gacttacagc cgggaggaca tggacaagct
     3661 gctccgcctg acgcattaca acatctgcaa caaccgggag cagctgctgg aggccctgcg
     3721 tgaggccgtg cggcggcgca agcagcgccg ggccgagtga tgggcgggag ggtgccacgc
     3781 cccagcccca cggcccctga ctttttcagg ctcccttctt ggccgccttg ctgctccggt
     3841 tgagttgggg tggagaccgt cgtcaccaag ttcagagcct ctggcagttt ggacggccca
     3901 gttgtggtcg ccagccctct gaggggctca cgaaggtgcc tagcaccacc cagacgtggc
     3961 actgaagcca ccagcacccc tgccacggac accctggggt aggttgaggg ttttaaacag
     4021 gggctggggc ctcgtctcca tgatgtggca gcgggggtaa gtggggtggt ctgggccaga
     4081 tttgtgtatg cacccaaaac cccgtgacct gagtgtcctt tcccttcctt gctaccttga
     4141 ttagctgtac agagtgaaag tagagcattt tatgtattac agaggcccgt acaaacgtga
     4201 ggcattatgg agattactgt cattgcttcc aagaagggac acgtcatccc acctcttggt
     4261 tacccagggc aaggactggt ttaggaaaca aaacctctcc gcaggcacct tatagagctg
     4321 gcaagtcagc ctgggcttcc cctgaagagc aggctgtgag ctcatggcag tgtctactcc
     4381 actctggccc actctctcca agcagagagg tggccagttt agcctggggg gtgggtcttg
     4441 ctgctgcagc cctggccctg cccaggtgac ttgcaggcag tgacagccag cacccctgtc
     4501 ttcctcaccc agggactcag gcaaagggct gcttcctgtc ccatgactga taggggtggg
     4561 ccagacctgg gatcagatgc accaaagaca gaccagtgct aacggcgtga cttcagcaag
     4621 ctcggacctt ggtggggcct gtctcctaac cgtctattcc agatgttggt cccaggggtc
     4681 tgatagctgg gtctcctggt ccccttgagg gtgtcctcgc ttgtagccct gaggtttggt
     4741 gccacctaca ggttcgcttc agggcccaga cctgttggga gaacagggag gtggagtgaa
     4801 tttagggcct agcttccccg gaatcttctc caagcactgg tgccccaggc ctctgcacct
     4861 cctcctaaca ttgatgtggg cggtggctac tgggaggcag ctgcaggagg gaccatgatg
     4921 tgcggggggc atgggagatg actggttccc atgatgcaac tcactacctc tgtgttccct
     4981 gggcatgtgg cgggaggcac agagcagaag acatggctgc tctgatgacc ttagaagcca
     5041 ccatgtcctg gagagggcct gttgactcag cagtacctca tctgaatcat aaattggaag
     5101 ctgtgggtcc tgcaggagtg gataattata ccagacacca cga
//
LOCUS       XR_004348119            4342 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytosolic phospholipase A2 beta
            (LOC116747819), transcript variant X3, misc_RNA.
ACCESSION   XR_004348119
VERSION     XR_004348119.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4342
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4342
                     /gene="LOC116747819"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 4 long SRA reads, 14
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747819"
     misc_RNA        1..4342
                     /gene="LOC116747819"
                     /product="cytosolic phospholipase A2 beta, transcript
                     variant X3"
                     /db_xref="GeneID:116747819"
ORIGIN      
        1 tcgggcccgg ggcgaggtct taaggagaga gggagggagg ggcggtggcg gcgtcatcat
       61 ggcggacgcg gctttggacg ctgtgcgaag ggagttacgg gagttcccgg ctgcggcaag
      121 ggagctcagc gtgcctcctg ctgtgcccta cctggacaag cccccgggtc cactccactt
      181 ctaccgtgac tgggtctgcc ccaacaggcc ctgcatcatc cgaaatgccc tgcagcactg
      241 gccagccctc cagaagtggt ccctccccta cctcagagcc acagcgggct ccgtggaggt
      301 gagcgtggcg gtgaccccag atggttacgc ggatgccgtg cgaggggacc ggtttgtgat
      361 gcctgccgag cgccgcctgc ccctgagctg tgtgctggac gtgctggagg gccgagcaca
      421 acaccccggg gtcctctacg tgcagaagca gtgctccaac ctcctcaccg agctgcccca
      481 gctgttgcct gatctggagc cccacgtgcc ctgggcctct gaggcgctgg gaaagatgcc
      541 tgatgctgtg aacttctggc tgggggaggc agctgcagtg acatcattgc ataaggacca
      601 ctatgagaac ctatactgtg tggtctcggg agagaaacac ttcctgctgc atccacccag
      661 cgaccggccc ttcattccct atgagctgta cacaccggca acctaccagc taaccgaaga
      721 gggctcattc aagatggtgg acgaagaggc catggagaag gtgccttgga tcccactgga
      781 ccccttagct ccagatctgg ccgagtaccc cagttacagt caggcccagg cccttcactg
      841 caccgtgcag actggcgaga tgctctatct gcccgccctg tggttccacc acgtccagca
      901 gtcccatggc tgcatggccg tgaatttctg gtacgacatg gagtatgacc tcaagtacag
      961 ttacttccag ctgctcgact ccctcactaa ggtctcaggc ctcaactgac cgagccctgg
     1021 tgaacatcgc caaggacgac ttacggaaaa ggccgcgccc ctcctgagcc agtcacctcg
     1081 agaggcaatc tggagtcaga ggtgctggct gctggcccag ctgggcttag ggtcagcttc
     1141 agatgatcgg gaggaccagg aggcgccagg caggtctggg tgtggcctcc caggaaactg
     1201 gcgcacaggt gaggcagcag cctgttgtgg aagaggagtg gggttcaggt gcggcaccgc
     1261 ctcaccagtg ccgtgacctt gggcgagtta ctgcctcacg gcctcagtgt gctgtctgta
     1321 aaacagagat aacgatcgtt cctacctcat ggcgtgttgg cgatggtatc tgtaaggatg
     1381 gcaccagtct ggcgcagagg aagggttcaa taaaaggcgg ctatgattca cgtatgtgct
     1441 aaggctccct catggttgcc ttctgtggtc tggtgagggc tggaaggttc aggtaaacat
     1501 ttcagggtga ccctgcttgg gggtgagggc tgggtccagg ccggggcctg aggagatctc
     1561 tgcagccgag acctctctgt ccccggccgc tgtcacagcc tctctggggc aagcaggccg
     1621 acctcagcct tgtcactctg tggcacggag ctccttgatg gagggcttgt aaagttctcg
     1681 ctagcttcgc tctggccttg tttgctctcc accttcagct ccacagcagc tggtggggtc
     1741 ttgttcccta agggttgccc ttgtttccct cacagcaggc acagatagga ggggacggaa
     1801 acccctgtcc ctcgtgggtc tctgcactcg ctgtccccac cccgccccct tgccccaacc
     1861 tggccctggg gacggaagag cccccttccc cggctgccac ccagcaccca gctccaaggt
     1921 ggaggcagcc cggcacgtgg ctttgaaggg ctgtttcaca gaacaagcca cagccctgcc
     1981 ggctcacgct ggggcccggg gcgctcccct caggttggcc aagcacttca gtgaagaccg
     2041 ggcggttctg tcacgttggc accaggaggc tgtggaaggc cctggggctg gggacgcggc
     2101 tcgcgggttt gctgctgctc tggggcccgc tccctgcctt ccagacctca gcagcccctt
     2161 cagctgcaac cccagccaga cccccgcggc ctcttgctca gccgctgacg gcaagctctc
     2221 ctgggggccc ctcctcgagg tccaggcagg gagagcaggg ctgtggggcc cagtgggcgg
     2281 tggttggaga ggatgggtct gtgggggtgc tgagccctca tcacgagggt gtcagtggct
     2341 ctgtgtgggc ttaaggtgtc tcatctcctg gatgaggggc tggtccagga gtgggtgtgg
     2401 ggcttgggtg gagctgaagc agtgggcagg aaccagggag gagctcgagg cctgctggga
     2461 catccctggc tctcggtgag aaagctgaca gtcctcagtc ctgcaggtgc tgcccgccat
     2521 tccttcctcc cgaggactct ctgcctcatg gctctggcaa aggtgcctgg gacctgcttg
     2581 ctcaccattc atgtcctgca ggcccatggc ctgccctcca aggacctagc caccaggtcc
     2641 agacgcgcgt ggtcaagaac agcagaaacc ccatctggaa tcagagcttt cacttccgaa
     2701 tccacaccca gctcaaggtg ggcaggcatc agcctggccc tgctccctga cccacccctg
     2761 tcccacccct ccttcctgcg gcccccttac tctgttcccc tttcagaaca tcgtgcagtt
     2821 caaagtcttt gaccaggacc ttctgaccga ggatgaccct ctgttgttgg tgctgtttga
     2881 cgtggggact ttgcgggctg gggagtcccg gcgtgagagc ttctcactga accctcaggc
     2941 aaggctgtgt gcaggcagcg gagggcttca gctgtgggga ggggatgctt tggagggtgg
     3001 ccaggtacat ggttttcttc tccagtgagt ggtccaggct tccctggcat cccagaggcc
     3061 tctgtcagcg aggagctact gtccaccaaa gagcggtcct gtccccgacc ctctgtcttg
     3121 tcccctaagc caagggcagc tttcttggag cagtccaggg aaggtggaca gtggctctcc
     3181 tcaccactgg gaccgcagct gcccaggtgt ctgggttggg acctacacac acatgtactc
     3241 ctcaccgttt ctaacttgct tctttctctc tacagggtaa ggagcagctg gaagttgaat
     3301 ttcggctgca gaatctgtaa gttgggccat ggggcagttc ccgggtggga gtgattcctt
     3361 ctgggaagga gagagcccag cgcacccaga gctgacaccc ttccctggga ggcatcaggg
     3421 gtggaggagg aaagcccaga cctccttggg ggatgggaac ctggattctc gctaagggtc
     3481 actgggggct ctttccagga ccgactgtgc tgagcgcctt gtcagtaatg gcatcctggt
     3541 ggtgagtctg gaacccctcc ctcgtgctct gtgctcaccc ttctccctgg gcctgaagct
     3601 tgggcccacc atgggggtcg ggtagcgctg ttgctggggt gggggtgggg ggcgggagcg
     3661 gctgggattt tagttccaga ggctacaacc ccaagcaaat gtttggtgac tcagggccaa
     3721 ggtaaaaagg tgctgaggag caagaaccag ggtgtcggga gggtggcatc tccagcaggg
     3781 gaggggctcg agtctgaggg gctctcttaa tgacctaggc ccgggagctc tcctgcttgt
     3841 gtgttcgact ggagaaggcc gggggccagc agggtgagtc cccgaaccac tgggatagct
     3901 gctgtctctc agcccttgtc ttcccctttc taaggggacc ctggagggaa ccttgcacaa
     3961 gctgccccca gctctcagcc aggagcagga gtgaggggat gaatccatgc tggggctttt
     4021 cccattagtc ctcagagggg ctgtcgtggg accccatctc ccagcctagg tctgagccag
     4081 acctccatct cagtgggcgg gggggggggt gccctgtccc ccaggcccct taggcaagac
     4141 aggggcctct gtgggctgag atccccttcc cagcctctct gccctggttc ctctttccag
     4201 ggtcggaggg cagagttcag ctcgcggttc ccgggtcctg tgagggtccg caggaggcct
     4261 ccgtgggcgc cggctccttc ggcttccgtt ggccggcctg ctgggagccg gagccgggtg
     4321 ttcacccgca ggtagtggga cg
//
LOCUS       XM_032620377            4480 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus cytosolic phospholipase A2 beta
            (LOC116747819), transcript variant X4, mRNA.
ACCESSION   XM_032620377
VERSION     XM_032620377.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4480
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4480
                     /gene="LOC116747819"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116747819"
     CDS             59..3097
                     /gene="LOC116747819"
                     /codon_start=1
                     /product="cytosolic phospholipase A2 beta isoform X3"
                     /protein_id="XP_032476268.1"
                     /db_xref="GeneID:116747819"
                     /translation="MADAALDAVRRELREFPAAARELSVPPAVPYLDKPPGPLHFYRD
                     WVCPNRPCIIRNALQHWPALQKWSLPYLRATAGSVEVSVAVTPDGYADAVRGDRFVMP
                     AERRLPLSCVLDVLEGRAQHPGVLYVQKQCSNLLTELPQLLPDLEPHVPWASEALGKM
                     PDAVNFWLGEAAAVTSLHKDHYENLYCVVSGEKHFLLHPPSDRPFIPYELYTPATYQL
                     TEEGSFKMVDEEAMEKAKVPGTCLLTIHVLQAHGLPSKDLVTPSDCYVTLWLPSVSSH
                     QVQTRVVKNSRNPIWNQSFHFRIHTQLKNIVQFKVFDQDLLTEDDPLLLVLFDVGTLR
                     AGESRRESFSLNPQGKEQLEVEFRLQNLTDCAERLVSNGILVARELSCLCVRLEKAGG
                     QQGSEGRVQLAVPGSCEGPQEASVGAGSFGFRWPACWEPEPGVHPQDEPQEKLKVPLR
                     ALPSDQVMRRVFPTSQEPLMKVELKKEEGPRELAVRLDCGPCAEERAFLSRRKQVVAK
                     ALKQALQLDGDLQEDEIPVVAVAATGGGIRAMTSLYGQLAGLKELGLLDCISCITGAS
                     GSTWALANLYEDPEWSQKDLAGPIESLKTQVTKSKLGVVAPSQLWRYQQELAERARLG
                     HPPCFTTLWALINEALLHDEPHDHKLSDQREALSRGQNPLPIYCALNTKERNLTTFEF
                     GEWCEFSPYEVGFPRYGAFIPSELFGSEFFMGRLTKRLPESRICFLEGIWSNVYAASL
                     QDSLYWSSEPSQFWDRWAQAQASLDKEQVPLLNIEEPPTVASRIAEFFTDLLTRRPLA
                     QATHNFLRGLSFHKDYFQHPHFSAWKATKLDGLPNQLTPAEPFLCLLDVGFFVNTSCP
                     PLLRPTRDVDLILSLDYNLHGAFEQLQILDRFCQEQGIPFPSISPSPEEQRQPRECHL
                     FSDPARPDAPAVLHFPLVNASFREYSAPGVRRTAEAQEAGEVNLSSSDSPYHYLKVTY
                     SREDMDKLLRLTHYNICNNREQLLEALREAVRRRKQRRAE"
     misc_feature    170..901
                     /gene="LOC116747819"
                     /note="Cupin-like domain; Region: Cupin_8; pfam13621"
                     /db_xref="CDD:463936"
     misc_feature    782..1141
                     /gene="LOC116747819"
                     /note="C2 domain present in cytosolic PhosphoLipase A2
                     (cPLA2); Region: C2_cPLA2; cd04036"
                     /db_xref="CDD:176001"
     misc_feature    order(836..838,845..847,911..913,995..997,1001..1003)
                     /gene="LOC116747819"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:176001"
     misc_feature    1202..1477
                     /gene="LOC116747819"
                     /note="Cytosolic phospholipases A2 C2-domain; Region:
                     cPLA2_C2; pfam18695"
                     /db_xref="CDD:465834"
     misc_feature    1478..3088
                     /gene="LOC116747819"
                     /note="Group IVB, IVD, IVE, and IVF cytosolic
                     phospholipase A2; catalytic domain; Ca-dependent; Region:
                     cPLA2_Grp-IVB-IVD-IVE-IVF; cd07201"
                     /db_xref="CDD:132840"
     misc_feature    order(1661..1666,1670..1672,1754..1756,2594..2596)
                     /gene="LOC116747819"
                     /note="active site"
                     /db_xref="CDD:132840"
     misc_feature    1748..1762
                     /gene="LOC116747819"
                     /note="nucleophile elbow; other site"
                     /db_xref="CDD:132840"
     misc_feature    order(2282..2284,2450..2452)
                     /gene="LOC116747819"
                     /note="flexible lid region; other site"
                     /db_xref="CDD:132840"
ORIGIN      
        1 tcgggcccgg ggcgaggtct taaggagaga gggagggagg ggcggtggcg gcgtcatcat
       61 ggcggacgcg gctttggacg ctgtgcgaag ggagttacgg gagttcccgg ctgcggcaag
      121 ggagctcagc gtgcctcctg ctgtgcccta cctggacaag cccccgggtc cactccactt
      181 ctaccgtgac tgggtctgcc ccaacaggcc ctgcatcatc cgaaatgccc tgcagcactg
      241 gccagccctc cagaagtggt ccctccccta cctcagagcc acagcgggct ccgtggaggt
      301 gagcgtggcg gtgaccccag atggttacgc ggatgccgtg cgaggggacc ggtttgtgat
      361 gcctgccgag cgccgcctgc ccctgagctg tgtgctggac gtgctggagg gccgagcaca
      421 acaccccggg gtcctctacg tgcagaagca gtgctccaac ctcctcaccg agctgcccca
      481 gctgttgcct gatctggagc cccacgtgcc ctgggcctct gaggcgctgg gaaagatgcc
      541 tgatgctgtg aacttctggc tgggggaggc agctgcagtg acatcattgc ataaggacca
      601 ctatgagaac ctatactgtg tggtctcggg agagaaacac ttcctgctgc atccacccag
      661 cgaccggccc ttcattccct atgagctgta cacaccggca acctaccagc taaccgaaga
      721 gggctcattc aagatggtgg acgaagaggc catggagaag gcaaaggtgc ctgggacctg
      781 cttgctcacc attcatgtcc tgcaggccca tggcctgccc tccaaggacc tagtgacccc
      841 ctctgactgc tatgtgactc tctggctgcc ctcggtctcc agccaccagg tccagacgcg
      901 cgtggtcaag aacagcagaa accccatctg gaatcagagc tttcacttcc gaatccacac
      961 ccagctcaag aacatcgtgc agttcaaagt ctttgaccag gaccttctga ccgaggatga
     1021 ccctctgttg ttggtgctgt ttgacgtggg gactttgcgg gctggggagt cccggcgtga
     1081 gagcttctca ctgaaccctc agggtaagga gcagctggaa gttgaatttc ggctgcagaa
     1141 tctgaccgac tgtgctgagc gccttgtcag taatggcatc ctggtggccc gggagctctc
     1201 ctgcttgtgt gttcgactgg agaaggccgg gggccagcag gggtcggagg gcagagttca
     1261 gctcgcggtt cccgggtcct gtgagggtcc gcaggaggcc tccgtgggcg ccggctcctt
     1321 cggcttccgt tggccggcct gctgggagcc ggagccgggt gttcacccgc aggatgagcc
     1381 ccaagagaag ctgaaggtgc ctctgagggc actgccctct gaccaggtaa tgagacgtgt
     1441 cttccctaca tcccaggagc ccctgatgaa ggtggagctg aaaaaagaag aaggaccgag
     1501 agagctggcg gtgcggctgg actgcgggcc ctgtgccgag gagcgggcct tcctgagcag
     1561 gaggaagcag gtggtggcca aggccctgaa gcaggccctg cagctggatg gagacctgca
     1621 ggaggatgag atcccagtgg tagctgttgc ggccactggt ggtgggatcc gggccatgac
     1681 ttccctgtat gggcagctgg ctggcctgaa ggagctgggc ctcttggatt gcatctcctg
     1741 catcacaggg gcctcgggct ccacctgggc tttggccaac ctctatgagg acccagagtg
     1801 gtctcagaag gacctggcag ggcccatcga atcactgaag acgcaggtga ccaagagcaa
     1861 gctgggcgtg gtggccccca gccagctgtg gcggtaccag caggagctgg ctgaacgtgc
     1921 acgcctgggc cacccgccct gcttcaccac cctgtgggcc ctcatcaacg aggcgctgtt
     1981 gcatgacgag cctcatgacc acaaactctc agaccagcgg gaggccctga gccgtggcca
     2041 gaaccctctg cccatctact gtgctctcaa caccaaagaa cggaacctga ctacttttga
     2101 atttggggag tggtgtgagt tctcccccta tgaggtcggc tttcccaggt acggcgcctt
     2161 catcccctct gagctcttcg gctccgagtt cttcatgggg cgcctgacaa agcggcttcc
     2221 tgagtcccgc atctgcttcc tggaaggcat ctggagcaac gtgtacgcag ccagcctcca
     2281 ggacagcttg tattggtcct ctgagcccag ccagttctgg gaccgctggg cacaggctca
     2341 ggccagcctg gacaaggagc aggtccccct tctgaatata gaagagcctc ccacagtggc
     2401 cagcaggata gctgagttct tcactgacct tctgacacgg cgtccacttg cccaggccac
     2461 ccacaatttc ctccgtggcc tctctttcca caaggactat ttccagcatc ctcacttctc
     2521 tgcctggaaa gccaccaaac tggatggcct ccccaaccag ctgacacctg cagaaccctt
     2581 cctttgcctg ttggatgttg gcttctttgt caacaccagc tgcccacccc tcctgcggcc
     2641 cacacgggac gtggacctca tcctgtcgct ggattacaac ctccatggag cctttgagca
     2701 gctgcagatc ctggatcggt tctgccagga gcagggcatc ccattcccat ccatctcacc
     2761 cagccccgag gagcagcgcc agccccggga gtgccatctc ttctcggacc ctgcccgccc
     2821 tgacgcccct gctgtgctgc acttcccgct ggtcaacgcc tccttccggg agtactcagc
     2881 cccaggggtc cggcggacgg ccgaggcgca ggaggccggg gaggtgaacc tgtcttcatc
     2941 cgactccccc taccactact tgaaggtgac ttacagccgg gaggacatgg acaagctgct
     3001 ccgcctgacg cattacaaca tctgcaacaa ccgggagcag ctgctggagg ccctgcgtga
     3061 ggccgtgcgg cggcgcaagc agcgccgggc cgagtgatgg gcgggagggt gccacgcccc
     3121 agccccacgg cccctgactt tttcaggctc ccttcttggc cgccttgctg ctccggttga
     3181 gttggggtgg agaccgtcgt caccaagttc agagcctctg gcagtttgga cggcccagtt
     3241 gtggtcgcca gccctctgag gggctcacga aggtgcctag caccacccag acgtggcact
     3301 gaagccacca gcacccctgc cacggacacc ctggggtagg ttgagggttt taaacagggg
     3361 ctggggcctc gtctccatga tgtggcagcg ggggtaagtg gggtggtctg ggccagattt
     3421 gtgtatgcac ccaaaacccc gtgacctgag tgtcctttcc cttccttgct accttgatta
     3481 gctgtacaga gtgaaagtag agcattttat gtattacaga ggcccgtaca aacgtgaggc
     3541 attatggaga ttactgtcat tgcttccaag aagggacacg tcatcccacc tcttggttac
     3601 ccagggcaag gactggttta ggaaacaaaa cctctccgca ggcaccttat agagctggca
     3661 agtcagcctg ggcttcccct gaagagcagg ctgtgagctc atggcagtgt ctactccact
     3721 ctggcccact ctctccaagc agagaggtgg ccagtttagc ctggggggtg ggtcttgctg
     3781 ctgcagccct ggccctgccc aggtgacttg caggcagtga cagccagcac ccctgtcttc
     3841 ctcacccagg gactcaggca aagggctgct tcctgtccca tgactgatag gggtgggcca
     3901 gacctgggat cagatgcacc aaagacagac cagtgctaac ggcgtgactt cagcaagctc
     3961 ggaccttggt ggggcctgtc tcctaaccgt ctattccaga tgttggtccc aggggtctga
     4021 tagctgggtc tcctggtccc cttgagggtg tcctcgcttg tagccctgag gtttggtgcc
     4081 acctacaggt tcgcttcagg gcccagacct gttgggagaa cagggaggtg gagtgaattt
     4141 agggcctagc ttccccggaa tcttctccaa gcactggtgc cccaggcctc tgcacctcct
     4201 cctaacattg atgtgggcgg tggctactgg gaggcagctg caggagggac catgatgtgc
     4261 ggggggcatg ggagatgact ggttcccatg atgcaactca ctacctctgt gttccctggg
     4321 catgtggcgg gaggcacaga gcagaagaca tggctgctct gatgacctta gaagccacca
     4381 tgtcctggag agggcctgtt gactcagcag tacctcatct gaatcataaa ttggaagctg
     4441 tgggtcctgc aggagtggat aattatacca gacaccacga
//
LOCUS       XM_032620389            1551 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fumarylacetoacetate hydrolase (FAH),
            transcript variant X1, mRNA.
ACCESSION   XM_032620389
VERSION     XM_032620389.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1551
                     /gene="FAH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 mRNAs, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747836"
     CDS             124..1383
                     /gene="FAH"
                     /codon_start=1
                     /product="fumarylacetoacetase isoform X1"
                     /protein_id="XP_032476280.1"
                     /db_xref="GeneID:116747836"
                     /translation="MSFVPVAEDSDFPIHNLPYGVFSTKGNPRPRIGVAIGDQILDLS
                     VIKHLFTGPVLSQHQDVFDQPALNSFMGLGQAAWKEARGLLQNLLSASQARLRDDTEL
                     RKRAFTSQASATMHLPATIGDYTDFYSSRHHATNVGVMFRGTENPLMPNWLHLPVGYH
                     GRASSIVVSGTPIRRPKGQMRPDDSKPPVYGACKLLDFELETAFFVGPGNKFGEPIPI
                     SKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPN
                     QEQDPKPLPYLRHDQPYTFDINLSVTLKGEGMNQAATICRSNFKYMYWTMLQQLTHHS
                     VNGCNLRPGDLLASGTISGPEPESFGCMLELSWKGTRAIEVGNGQTRKFLLDGDEVII
                     TGQCQGDGYRIGFGQCVGKVLPALSAA"
     misc_feature    127..1371
                     /gene="FAH"
                     /note="fumarylacetoacetase; Region: fum_ac_acetase;
                     TIGR01266"
                     /db_xref="CDD:162276"
ORIGIN      
        1 gagggacggg cctgaagggg cggagcccgc agggggcgcg accctgcgtg accacctctg
       61 cgaatccagt cctgctagcc gcgcgcagct cgcagcccgc caccctgctc cgtgcccatc
      121 agcatgtctt tcgtcccagt ggccgaggat tccgacttcc ccatccacaa cctgccctac
      181 ggcgtcttct ccaccaaagg caacccaaga ccaaggatcg gcgtggcgat tggtgaccag
      241 atcctagacc tcagtgtcat taagcacctc ttcactgggc ctgtcctctc ccaacaccag
      301 gatgtctttg atcagccagc tctcaacagc ttcatgggcc tgggtcaggc tgcctggaag
      361 gaggcaaggg gattgttgca gaacctgctg tccgccagcc aagccaggct cagagatgac
      421 acggagcttc ggaagcgtgc attcacctcc caggcttccg ccacaatgca tcttccggcc
      481 accataggcg actacacgga cttctattcc tctcggcacc acgccaccaa tgtcggagtc
      541 atgttcaggg gcacagagaa cccgttgatg cccaattggc tgcacttacc agtgggctac
      601 cacggccgtg cttcctccat cgtggtgtct ggcaccccaa tccgcaggcc caagggacag
      661 atgagacccg atgactctaa gcctcctgtg tatggtgcct gcaaactctt ggacttcgag
      721 ttggaaacag ctttctttgt aggccctggg aacaaatttg gagagccgat ccccatttcc
      781 aaggcccacg agcacatttt tggaatggtc cttatgaacg actggagtgc tcgagacatt
      841 cagaagtggg agtacgtccc tcttgggccg ttcctcggga agagttttgg aaccaccatc
      901 tctccgtggg tggtgcccat ggatgccctc atgccctttg ctgtgcccaa ccaggagcag
      961 gaccccaagc ctctgccgta tctccgccac gaccagccct acacgttcga catcaacctg
     1021 tctgtcaccc tgaaaggaga aggaatgaac caagcagcta ccatatgcag gtccaatttt
     1081 aagtatatgt actggacgat gttgcagcag ctcacccacc actctgtcaa tggctgcaac
     1141 ctgcggccgg gggacctctt ggcttctgga accatcagcg ggccggagcc agagagcttt
     1201 ggctgcatgc tggagctgtc gtggaaggga acgagggcca tagaggtggg gaatggacag
     1261 accaggaagt ttctgctgga cggggatgaa gtcatcatca caggacagtg ccagggggac
     1321 gggtaccgca ttggctttgg ccagtgtgtg ggaaaagtgc tgccggccct ctcagcggcc
     1381 tgaggttctc tctgccttcc tggaaacaca agccttgagc actgccctct ccacctccct
     1441 gcgggggacc aggggcccca atgaggccgc agccctggtt cttcattcag taataaataa
     1501 agccatcgtg ctccctctcc atctgggcct ggcacggctc tgagtgcgca a
//
LOCUS       XM_032620397            5081 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fumarylacetoacetate hydrolase (FAH),
            transcript variant X2, mRNA.
ACCESSION   XM_032620397
VERSION     XM_032620397.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5081
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5081
                     /gene="FAH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:116747836"
     CDS             124..1362
                     /gene="FAH"
                     /codon_start=1
                     /product="fumarylacetoacetase isoform X2"
                     /protein_id="XP_032476288.1"
                     /db_xref="GeneID:116747836"
                     /translation="MSFVPVAEDSDFPIHNLPYGVFSTKGNPRPRIGVAIGDQILDLS
                     VIKHLFTGPVLSQHQDVFDQPALNSFMGLGQAAWKEARGLLQNLLSASQARLRDDTEL
                     RKRAFTSQASATMHLPATIGDYTDFYSSRHHATNVGVMFRGTENPLMPNWLHLPVGYH
                     GRASSIVVSGTPIRRPKGQMRPDDSKPPVYGACKLLDFELETAFFVGPGNKFGEPIPI
                     SKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPN
                     QEQDPKPLPYLRHDQPYTFDINLSVTLKGEGMNQAATICRSNFKYMYWTMLQQLTHHS
                     VNGCNLRPGDLLASGTISGPEPESFGCMLELSWKGTRAIEVGNGQTRKFLLDGDEVII
                     TEPSFEKAQHPDPSLIGVPT"
     misc_feature    127..1302
                     /gene="FAH"
                     /note="fumarylacetoacetase; Region: fum_ac_acetase;
                     TIGR01266"
                     /db_xref="CDD:162276"
ORIGIN      
        1 gagggacggg cctgaagggg cggagcccgc agggggcgcg accctgcgtg accacctctg
       61 cgaatccagt cctgctagcc gcgcgcagct cgcagcccgc caccctgctc cgtgcccatc
      121 agcatgtctt tcgtcccagt ggccgaggat tccgacttcc ccatccacaa cctgccctac
      181 ggcgtcttct ccaccaaagg caacccaaga ccaaggatcg gcgtggcgat tggtgaccag
      241 atcctagacc tcagtgtcat taagcacctc ttcactgggc ctgtcctctc ccaacaccag
      301 gatgtctttg atcagccagc tctcaacagc ttcatgggcc tgggtcaggc tgcctggaag
      361 gaggcaaggg gattgttgca gaacctgctg tccgccagcc aagccaggct cagagatgac
      421 acggagcttc ggaagcgtgc attcacctcc caggcttccg ccacaatgca tcttccggcc
      481 accataggcg actacacgga cttctattcc tctcggcacc acgccaccaa tgtcggagtc
      541 atgttcaggg gcacagagaa cccgttgatg cccaattggc tgcacttacc agtgggctac
      601 cacggccgtg cttcctccat cgtggtgtct ggcaccccaa tccgcaggcc caagggacag
      661 atgagacccg atgactctaa gcctcctgtg tatggtgcct gcaaactctt ggacttcgag
      721 ttggaaacag ctttctttgt aggccctggg aacaaatttg gagagccgat ccccatttcc
      781 aaggcccacg agcacatttt tggaatggtc cttatgaacg actggagtgc tcgagacatt
      841 cagaagtggg agtacgtccc tcttgggccg ttcctcggga agagttttgg aaccaccatc
      901 tctccgtggg tggtgcccat ggatgccctc atgccctttg ctgtgcccaa ccaggagcag
      961 gaccccaagc ctctgccgta tctccgccac gaccagccct acacgttcga catcaacctg
     1021 tctgtcaccc tgaaaggaga aggaatgaac caagcagcta ccatatgcag gtccaatttt
     1081 aagtatatgt actggacgat gttgcagcag ctcacccacc actctgtcaa tggctgcaac
     1141 ctgcggccgg gggacctctt ggcttctgga accatcagcg ggccggagcc agagagcttt
     1201 ggctgcatgc tggagctgtc gtggaaggga acgagggcca tagaggtggg gaatggacag
     1261 accaggaagt ttctgctgga cggggatgaa gtcatcatca cagaacccag ttttgagaaa
     1321 gcccagcatc ctgacccctc cttaatagga gtccctacct gaagcgtggg aatcagccat
     1381 gcccatctgc cctgcaggca ggttaagggg gcacccgtcc tgtgcactcg ctctccacat
     1441 cctggtctct gcctgccgac cacacatttc ccttcctgtg tcctattgtc acccctactt
     1501 cctgcgcctg tcttggtact gctgactctc tgctctgtgg gctgggacct tggacccatt
     1561 tcatctgcac atcctgtcgg ccatcccttt gaagtgtcct gccatctctg tgcagctggc
     1621 ttgctccaag caccatcctt ctgtgtctgg attgcttgca cagcttcgct ccagccccct
     1681 gcaatccatc ctgctcatgg tgcctggaaa atcatcttca ggtctgcttt cccccgttac
     1741 tcttctcttc ctgattttct cgtggcgccc tgtcgcctgt gtcataaatt catacccttc
     1801 cctcatctga ttctgttccc cccactgagc ctcattctaa ccataaccct gctttcccta
     1861 ctgcctgcag acctttgagc ttaaatctgg ctcagtttaa atgatgcctt ctctggttgc
     1921 tcagggacaa ccagtctgtc ctctccacga gcaactcact gaattctggt taattgtacg
     1981 cacgtcagtt tccatgctta gctaagagct tgtattagtt tcccagggct gctggaacaa
     2041 atgaccacaa acttgctggc ttaaaacaaa aacgtgttct ctcttggttc tagagggcag
     2101 aagtctgaag tccaggtgtt gtcagggcca cacttgttcc agaggttcaa ggggaggatc
     2161 cagtccctgc cgcttccagc tgctggtggc tactggcatt ccttggcttg agtccacatc
     2221 actccagtct ctacctccgt cttcacattg cctcctctgc ttctgtccgt caaatgtccc
     2281 tctgcttctc tcttatgaca cacttgtgat ggcatttggg gtccacccag ataagctcct
     2341 tgtcttaaga tccctaactt aatcacatct gcaaaaacat taccatataa ggtaacattc
     2401 acaggttccg tggtttagta tttgatactt ttggggggca ttagtcagcc tactacagag
     2461 ttcttagagg acaaggtcca gaccttccct ctctctacag tctgactgtg tgccagccac
     2521 atagtgggtg ttcagtgtgg ttgttggttg gttgaataaa tgaagtggat ttagtagaga
     2581 agatgcaggc agagctcaag acagcagcaa ataatgccca aaattaacca gtaagtaccc
     2641 attttgcccc tactcttcct acagccctat catacccttt ctaataccag ttttaactaa
     2701 cggttcctga atatctgtgg gggccaacca tgttacagcc acgtccgatt ccatgattct
     2761 gtttcatact cacagaagcc cttgggtaag gtcattgccc cgattttaca gagtagaaaa
     2821 cttaggttga ttggagatag gttattggcg gaaattcaca cactgaggga gcaggatagg
     2881 gttcgggtct tctgattccc ttgccagctt tgatcaagag gtcctacagt tcttgccaga
     2941 gctactgcag gtcctcagtc gtggttctgt ggatcgagtg aaagcgtttt ctgaagtttt
     3001 ggtttgagga aaggaaggaa ggagatggga tgggagagga ggaaatgacg gcttcagctc
     3061 tcttgtcact gttgtataag cccccagcta agccgctgtg gacccggcag ctgcccaggg
     3121 cctggaagaa aggagatgag tactcaggca gatgggattc acatgtgttc ttggcatttg
     3181 agtcaaggaa ggggtgagga cggagccagg atgctgcgag ggtcacttgt gtgtgtacag
     3241 cgcctttgct ccagaaggat ttacggccag gcagagaaat gcagagaaag gcaattcctt
     3301 ggatctgaag atggacatgt tggcaagaaa agagggaaac gggaatggat tggtggaatt
     3361 ccctggaaca agaataaaaa ttacaatttg gcaatagaag aggtataagt tatatattaa
     3421 tcaaacaaaa aaacaaacaa gaagagattt cacactgaag gagatgcctg ccaaattcta
     3481 gggagtgaat gtggctgaga cttgagctct gtgctcgcgt gtggggaggt ggacgggggg
     3541 catgggcgtg tcagctgggt tgcctttgct gaggtcacca cagtgggcgg agtgctgtgc
     3601 cctcacctgc cacgacccct ctggcacctg atccgggtga gccaccctct tgctagaagc
     3661 catccagcct tcttcctact cctctggctg tacccgctca gatgccaccg tgtcatctcc
     3721 ctgctctctc atcatgggcg actattcccc aaatccgttt ctaaccactg gaatgataaa
     3781 gtgtagaaac caggatctga acccaggcag ttgggttcca gggtctgtgc tcttaaacca
     3841 atacgtcatg tcggttctca cttctgggag accaaaagcc ccagcccaac caatggtatc
     3901 cgctcctgtg ctccagcctt ggccaacctt ttggacgagg aggcctcctc tgtctacaga
     3961 acagagcacc cactgccaac gccaggcatg tgggctgttc ctgctgcctg gcacgccctc
     4021 ctcccctccc accattctca atcctcatgt cttctaacgc ccaacacaag ttccatcttt
     4081 tttagtattt ccattcttga ttctagtgtt gccgcagact tctcccttat atctgtattg
     4141 ctttgaccat ttccatagga atataagaaa aggaaagtgt taatatatag aatgatgccc
     4201 tatctcgaac cagaagtcta gcctaaagct attcaaaatc attaactaaa acagtcttca
     4261 gctgaaacac aagaaaacca cgatgaagac aacagtaacg caatagcaat ttattgtgtg
     4321 cctactgtgt gctaggtacc gtgcatggca ctttacctgc attatcacgt ctaattccca
     4381 tggtgctatt actctgattt atagatgaac cactggaggt ctagagaggg gaagtagctg
     4441 gaccagaatc acacagctgg caggtggcag ccctggaatg caaccaactc ccttggagtg
     4501 caaagctcac caccttcact tccgcacagt tgcaagccct tcccatttgc tttcccagat
     4561 catttccttt aggttcattc ggtgacataa tacggttggg actcccctga agctctggtg
     4621 gcagaggaaa ccctggtttc aggcctggct ctgccagtaa ctcagctggg tctggctcct
     4681 ggctctgggc cttgggatct cctccctctg ggaggtgacg ggtgcaccca ggcgtggcat
     4741 tccaggaagc tggaaaactg ggctgtagct atggattctc ggtcccatgg gtgggatgga
     4801 gttggggaat aggcagaggg tcagatttca ggaaagggcc agtgagatca gataacattc
     4861 cagaggagat gagtatactt ttcgcttcca tttccatggt tgatggagcc caacccaggg
     4921 aggcagggag ctgcttttcc cctctgccca gggctcggtg acacgctctg acttgggtgc
     4981 agactttcct catgctctgg cctctcgagg ccctctgtcc ctgcctgaac gcacctgccc
     5041 ccagcttctc ctccctgcac tggagagcag cagcttggga g
//
LOCUS       XM_032620407            4382 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fumarylacetoacetate hydrolase (FAH),
            transcript variant X3, mRNA.
ACCESSION   XM_032620407
VERSION     XM_032620407.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4382
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4382
                     /gene="FAH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747836"
     CDS             124..1362
                     /gene="FAH"
                     /codon_start=1
                     /product="fumarylacetoacetase isoform X2"
                     /protein_id="XP_032476298.1"
                     /db_xref="GeneID:116747836"
                     /translation="MSFVPVAEDSDFPIHNLPYGVFSTKGNPRPRIGVAIGDQILDLS
                     VIKHLFTGPVLSQHQDVFDQPALNSFMGLGQAAWKEARGLLQNLLSASQARLRDDTEL
                     RKRAFTSQASATMHLPATIGDYTDFYSSRHHATNVGVMFRGTENPLMPNWLHLPVGYH
                     GRASSIVVSGTPIRRPKGQMRPDDSKPPVYGACKLLDFELETAFFVGPGNKFGEPIPI
                     SKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPN
                     QEQDPKPLPYLRHDQPYTFDINLSVTLKGEGMNQAATICRSNFKYMYWTMLQQLTHHS
                     VNGCNLRPGDLLASGTISGPEPESFGCMLELSWKGTRAIEVGNGQTRKFLLDGDEVII
                     TEPSFEKAQHPDPSLIGVPT"
     misc_feature    127..1302
                     /gene="FAH"
                     /note="fumarylacetoacetase; Region: fum_ac_acetase;
                     TIGR01266"
                     /db_xref="CDD:162276"
ORIGIN      
        1 gagggacggg cctgaagggg cggagcccgc agggggcgcg accctgcgtg accacctctg
       61 cgaatccagt cctgctagcc gcgcgcagct cgcagcccgc caccctgctc cgtgcccatc
      121 agcatgtctt tcgtcccagt ggccgaggat tccgacttcc ccatccacaa cctgccctac
      181 ggcgtcttct ccaccaaagg caacccaaga ccaaggatcg gcgtggcgat tggtgaccag
      241 atcctagacc tcagtgtcat taagcacctc ttcactgggc ctgtcctctc ccaacaccag
      301 gatgtctttg atcagccagc tctcaacagc ttcatgggcc tgggtcaggc tgcctggaag
      361 gaggcaaggg gattgttgca gaacctgctg tccgccagcc aagccaggct cagagatgac
      421 acggagcttc ggaagcgtgc attcacctcc caggcttccg ccacaatgca tcttccggcc
      481 accataggcg actacacgga cttctattcc tctcggcacc acgccaccaa tgtcggagtc
      541 atgttcaggg gcacagagaa cccgttgatg cccaattggc tgcacttacc agtgggctac
      601 cacggccgtg cttcctccat cgtggtgtct ggcaccccaa tccgcaggcc caagggacag
      661 atgagacccg atgactctaa gcctcctgtg tatggtgcct gcaaactctt ggacttcgag
      721 ttggaaacag ctttctttgt aggccctggg aacaaatttg gagagccgat ccccatttcc
      781 aaggcccacg agcacatttt tggaatggtc cttatgaacg actggagtgc tcgagacatt
      841 cagaagtggg agtacgtccc tcttgggccg ttcctcggga agagttttgg aaccaccatc
      901 tctccgtggg tggtgcccat ggatgccctc atgccctttg ctgtgcccaa ccaggagcag
      961 gaccccaagc ctctgccgta tctccgccac gaccagccct acacgttcga catcaacctg
     1021 tctgtcaccc tgaaaggaga aggaatgaac caagcagcta ccatatgcag gtccaatttt
     1081 aagtatatgt actggacgat gttgcagcag ctcacccacc actctgtcaa tggctgcaac
     1141 ctgcggccgg gggacctctt ggcttctgga accatcagcg ggccggagcc agagagcttt
     1201 ggctgcatgc tggagctgtc gtggaaggga acgagggcca tagaggtggg gaatggacag
     1261 accaggaagt ttctgctgga cggggatgaa gtcatcatca cagaacccag ttttgagaaa
     1321 gcccagcatc ctgacccctc cttaatagga gtccctacct gaagcgtggg aatcagccat
     1381 gcccatctgc cctgcagagg gcagaagtct gaagtccagg tgttgtcagg gccacacttg
     1441 ttccagaggt tcaaggggag gatccagtcc ctgccgcttc cagctgctgg tggctactgg
     1501 cattccttgg cttgagtcca catcactcca gtctctacct ccgtcttcac attgcctcct
     1561 ctgcttctgt ccgtcaaatg tccctctgct tctctcttat gacacacttg tgatggcatt
     1621 tggggtccac ccagataagc tccttgtctt aagatcccta acttaatcac atctgcaaaa
     1681 acattaccat ataaggtaac attcacaggt tccgtggttt agtatttgat acttttgggg
     1741 ggcattagtc agcctactac agagttctta gaggacaagg tccagacctt ccctctctct
     1801 acagtctgac tgtgtgccag ccacatagtg ggtgttcagt gtggttgttg gttggttgaa
     1861 taaatgaagt ggatttagta gagaagatgc aggcagagct caagacagca gcaaataatg
     1921 cccaaaatta accagtaagt acccattttg cccctactct tcctacagcc ctatcatacc
     1981 ctttctaata ccagttttaa ctaacggttc ctgaatatct gtgggggcca accatgttac
     2041 agccacgtcc gattccatga ttctgtttca tactcacaga agcccttggg taaggtcatt
     2101 gccccgattt tacagagtag aaaacttagg ttgattggag ataggttatt ggcggaaatt
     2161 cacacactga gggagcagga tagggttcgg gtcttctgat tcccttgcca gctttgatca
     2221 agaggtccta cagttcttgc cagagctact gcaggtcctc agtcgtggtt ctgtggatcg
     2281 agtgaaagcg ttttctgaag ttttggtttg aggaaaggaa ggaaggagat gggatgggag
     2341 aggaggaaat gacggcttca gctctcttgt cactgttgta taagccccca gctaagccgc
     2401 tgtggacccg gcagctgccc agggcctgga agaaaggaga tgagtactca ggcagatggg
     2461 attcacatgt gttcttggca tttgagtcaa ggaaggggtg aggacggagc caggatgctg
     2521 cgagggtcac ttgtgtgtgt acagcgcctt tgctccagaa ggatttacgg ccaggcagag
     2581 aaatgcagag aaaggcaatt ccttggatct gaagatggac atgttggcaa gaaaagaggg
     2641 aaacgggaat ggattggtgg aattccctgg aacaagaata aaaattacaa tttggcaata
     2701 gaagaggtat aagttatata ttaatcaaac aaaaaaacaa acaagaagag atttcacact
     2761 gaaggagatg cctgccaaat tctagggagt gaatgtggct gagacttgag ctctgtgctc
     2821 gcgtgtgggg aggtggacgg ggggcatggg cgtgtcagct gggttgcctt tgctgaggtc
     2881 accacagtgg gcggagtgct gtgccctcac ctgccacgac ccctctggca cctgatccgg
     2941 gtgagccacc ctcttgctag aagccatcca gccttcttcc tactcctctg gctgtacccg
     3001 ctcagatgcc accgtgtcat ctccctgctc tctcatcatg ggcgactatt ccccaaatcc
     3061 gtttctaacc actggaatga taaagtgtag aaaccaggat ctgaacccag gcagttgggt
     3121 tccagggtct gtgctcttaa accaatacgt catgtcggtt ctcacttctg ggagaccaaa
     3181 agccccagcc caaccaatgg tatccgctcc tgtgctccag ccttggccaa ccttttggac
     3241 gaggaggcct cctctgtcta cagaacagag cacccactgc caacgccagg catgtgggct
     3301 gttcctgctg cctggcacgc cctcctcccc tcccaccatt ctcaatcctc atgtcttcta
     3361 acgcccaaca caagttccat cttttttagt atttccattc ttgattctag tgttgccgca
     3421 gacttctccc ttatatctgt attgctttga ccatttccat aggaatataa gaaaaggaaa
     3481 gtgttaatat atagaatgat gccctatctc gaaccagaag tctagcctaa agctattcaa
     3541 aatcattaac taaaacagtc ttcagctgaa acacaagaaa accacgatga agacaacagt
     3601 aacgcaatag caatttattg tgtgcctact gtgtgctagg taccgtgcat ggcactttac
     3661 ctgcattatc acgtctaatt cccatggtgc tattactctg atttatagat gaaccactgg
     3721 aggtctagag aggggaagta gctggaccag aatcacacag ctggcaggtg gcagccctgg
     3781 aatgcaacca actcccttgg agtgcaaagc tcaccacctt cacttccgca cagttgcaag
     3841 cccttcccat ttgctttccc agatcatttc ctttaggttc attcggtgac ataatacggt
     3901 tgggactccc ctgaagctct ggtggcagag gaaaccctgg tttcaggcct ggctctgcca
     3961 gtaactcagc tgggtctggc tcctggctct gggccttggg atctcctccc tctgggaggt
     4021 gacgggtgca cccaggcgtg gcattccagg aagctggaaa actgggctgt agctatggat
     4081 tctcggtccc atgggtggga tggagttggg gaataggcag agggtcagat ttcaggaaag
     4141 ggccagtgag atcagataac attccagagg agatgagtat acttttcgct tccatttcca
     4201 tggttgatgg agcccaaccc agggaggcag ggagctgctt ttcccctctg cccagggctc
     4261 ggtgacacgc tctgacttgg gtgcagactt tcctcatgct ctggcctctc gaggccctct
     4321 gtccctgcct gaacgcacct gcccccagct tctcctccct gcactggaga gcagcagctt
     4381 gg
//
LOCUS       XM_032620416            1531 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fumarylacetoacetate hydrolase (FAH),
            transcript variant X4, mRNA.
ACCESSION   XM_032620416
VERSION     XM_032620416.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1531
                     /gene="FAH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:116747836"
     CDS             123..1346
                     /gene="FAH"
                     /codon_start=1
                     /product="fumarylacetoacetase isoform X3"
                     /protein_id="XP_032476307.1"
                     /db_xref="GeneID:116747836"
                     /translation="MSFVPVAEDSDFPIHNLPYGVFSTKGNPRPRIGVAIGDQILDLS
                     VIKHLFTGPVLSQHQDVFDQPALNSFMGLGQAAWKEARGLLQNLLSASQARLRDDTEL
                     RKRAFTSQASATMHLPATIGDYTDFYSSRHHATNVGVMFRGTENPLMPNWLHLPVGYH
                     GRASSIVVSGTPIRRPKGQMRPDDSKPPVYGACKLLDFELETAFFVGPGNKFGEPIPI
                     SKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPN
                     QEQDPKPLPYLRHDQPYTFDINLSVTLKGEGMNQAATICRSNFKYMYWTMLQQLTHHS
                     VNGCNLRPGDLLASGTISGPEPESFGCMLELSWKGTRAIEVGNGQTRKFLLDGDEVII
                     TGKPRCHPCTACEGP"
     misc_feature    126..1304
                     /gene="FAH"
                     /note="fumarylacetoacetase; Region: fum_ac_acetase;
                     TIGR01266"
                     /db_xref="CDD:162276"
ORIGIN      
        1 agggacgggc ctgaaggggc ggagcccgca gggggcgcga ccctgcgtga ccacctctgc
       61 gaatccagtc ctgctagccg cgcgcagctc gcagcccgcc accctgctcc gtgcccatca
      121 gcatgtcttt cgtcccagtg gccgaggatt ccgacttccc catccacaac ctgccctacg
      181 gcgtcttctc caccaaaggc aacccaagac caaggatcgg cgtggcgatt ggtgaccaga
      241 tcctagacct cagtgtcatt aagcacctct tcactgggcc tgtcctctcc caacaccagg
      301 atgtctttga tcagccagct ctcaacagct tcatgggcct gggtcaggct gcctggaagg
      361 aggcaagggg attgttgcag aacctgctgt ccgccagcca agccaggctc agagatgaca
      421 cggagcttcg gaagcgtgca ttcacctccc aggcttccgc cacaatgcat cttccggcca
      481 ccataggcga ctacacggac ttctattcct ctcggcacca cgccaccaat gtcggagtca
      541 tgttcagggg cacagagaac ccgttgatgc ccaattggct gcacttacca gtgggctacc
      601 acggccgtgc ttcctccatc gtggtgtctg gcaccccaat ccgcaggccc aagggacaga
      661 tgagacccga tgactctaag cctcctgtgt atggtgcctg caaactcttg gacttcgagt
      721 tggaaacagc tttctttgta ggccctggga acaaatttgg agagccgatc cccatttcca
      781 aggcccacga gcacattttt ggaatggtcc ttatgaacga ctggagtgct cgagacattc
      841 agaagtggga gtacgtccct cttgggccgt tcctcgggaa gagttttgga accaccatct
      901 ctccgtgggt ggtgcccatg gatgccctca tgccctttgc tgtgcccaac caggagcagg
      961 accccaagcc tctgccgtat ctccgccacg accagcccta cacgttcgac atcaacctgt
     1021 ctgtcaccct gaaaggagaa ggaatgaacc aagcagctac catatgcagg tccaatttta
     1081 agtatatgta ctggacgatg ttgcagcagc tcacccacca ctctgtcaat ggctgcaacc
     1141 tgcggccggg ggacctcttg gcttctggaa ccatcagcgg gccggagcca gagagctttg
     1201 gctgcatgct ggagctgtcg tggaagggaa cgagggccat agaggtgggg aatggacaga
     1261 ccaggaagtt tctgctggac ggggatgaag tcatcatcac aggaaagcca aggtgccatc
     1321 cttgcaccgc ttgtgagggt ccctgacagt agggcgggcc tggagttcca tctcggtgca
     1381 cctgtagctc tgcccagctt ctggagaagg tggtttttct gtcgaaaata cgtttgtcat
     1441 tcggatggcg ccttcctgcc ttgggcccag ctgtgtgctg accggcaccg tggccgcttg
     1501 ggcgttggtt cccctgagcc cagcggcttc g
//
LOCUS       XM_032620426            2093 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fumarylacetoacetate hydrolase (FAH),
            transcript variant X5, mRNA.
ACCESSION   XM_032620426
VERSION     XM_032620426.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2093
                     /gene="FAH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:116747836"
     CDS             123..1328
                     /gene="FAH"
                     /codon_start=1
                     /product="fumarylacetoacetase isoform X4"
                     /protein_id="XP_032476317.1"
                     /db_xref="GeneID:116747836"
                     /translation="MSFVPVAEDSDFPIHNLPYGVFSTKGNPRPRIGVAIGDQILDLS
                     VIKHLFTGPVLSQHQDVFDQPALNSFMGLGQAAWKEARGLLQNLLSASQARLRDDTEL
                     RKRAFTSQASATMHLPATIGDYTDFYSSRHHATNVGVMFRGTENPLMPNWLHLPVGYH
                     GRASSIVVSGTPIRRPKGQMRPDDSKPPVYGACKLLDFELETAFFVGPGNKFGEPIPI
                     SKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPN
                     QEQDPKPLPYLRHDQPYTFDINLSVTLKGEGMNQAATICRSNFKYMYWTMLQQLTHHS
                     VNGCNLRPGDLLASGTISGPEPESFGCMLELSWKGTRAIEVGNGQTRKFLLDGDEVII
                     TGATGEGAV"
     misc_feature    126..1319
                     /gene="FAH"
                     /note="fumarylacetoacetase; Region: fum_ac_acetase;
                     TIGR01266"
                     /db_xref="CDD:162276"
ORIGIN      
        1 agggacgggc ctgaaggggc ggagcccgca gggggcgcga ccctgcgtga ccacctctgc
       61 gaatccagtc ctgctagccg cgcgcagctc gcagcccgcc accctgctcc gtgcccatca
      121 gcatgtcttt cgtcccagtg gccgaggatt ccgacttccc catccacaac ctgccctacg
      181 gcgtcttctc caccaaaggc aacccaagac caaggatcgg cgtggcgatt ggtgaccaga
      241 tcctagacct cagtgtcatt aagcacctct tcactgggcc tgtcctctcc caacaccagg
      301 atgtctttga tcagccagct ctcaacagct tcatgggcct gggtcaggct gcctggaagg
      361 aggcaagggg attgttgcag aacctgctgt ccgccagcca agccaggctc agagatgaca
      421 cggagcttcg gaagcgtgca ttcacctccc aggcttccgc cacaatgcat cttccggcca
      481 ccataggcga ctacacggac ttctattcct ctcggcacca cgccaccaat gtcggagtca
      541 tgttcagggg cacagagaac ccgttgatgc ccaattggct gcacttacca gtgggctacc
      601 acggccgtgc ttcctccatc gtggtgtctg gcaccccaat ccgcaggccc aagggacaga
      661 tgagacccga tgactctaag cctcctgtgt atggtgcctg caaactcttg gacttcgagt
      721 tggaaacagc tttctttgta ggccctggga acaaatttgg agagccgatc cccatttcca
      781 aggcccacga gcacattttt ggaatggtcc ttatgaacga ctggagtgct cgagacattc
      841 agaagtggga gtacgtccct cttgggccgt tcctcgggaa gagttttgga accaccatct
      901 ctccgtgggt ggtgcccatg gatgccctca tgccctttgc tgtgcccaac caggagcagg
      961 accccaagcc tctgccgtat ctccgccacg accagcccta cacgttcgac atcaacctgt
     1021 ctgtcaccct gaaaggagaa ggaatgaacc aagcagctac catatgcagg tccaatttta
     1081 agtatatgta ctggacgatg ttgcagcagc tcacccacca ctctgtcaat ggctgcaacc
     1141 tgcggccggg ggacctcttg gcttctggaa ccatcagcgg gccggagcca gagagctttg
     1201 gctgcatgct ggagctgtcg tggaagggaa cgagggccat agaggtgggg aatggacaga
     1261 ccaggaagtt tctgctggac ggggatgaag tcatcatcac aggggccact ggagagggcg
     1321 ctgtttaaaa catagctgta aaacacagct ttcactgtct tgctgaaaac tcctgagtca
     1381 cctcagtgcc ctcaggaaaa ggttcaaact ccttcacgtg gcttctaaga acaccctgta
     1441 atctggcttc tcaggggacc ccacacaaca gcttcactga ataaatgcac ctcgtgcatc
     1501 tctcgccttg gtctccgtgt ctttgcacac gctgttccct ctgtctggca cacccttttc
     1561 attgtgtccc ccctggtgaa ctcgtatcca cctgtcgagt cccagctccg atgttccctc
     1621 ctttctgctc ctgtttcctc catgctgctc tcccagctcc tcatagactt gtctgctctg
     1681 actcagacag ctgctcccac tcagtggacc cttctcaggt ccagggacaa gggcctcctc
     1741 ctctctgcct ttctgttgaa atggaattga gtgaatttgt ttaacatctg ctctgggaga
     1801 catgtcatgc tagggcttca gccacatgtt tcatcgaatc cttacaaccc tgagaggtaa
     1861 ggattgctat tcccatttgc agacaagggg gctgagctca gaggttaaac gagttgcccc
     1921 taatccccca gcttataatc atcattgtag ctgacactgg gcatttcccc tgggcaaggc
     1981 actcttttgg agttctctgt gtattaactc atatcatctt tgcaacagcc ctacgcagtg
     2041 agtactatca ttagatccat ttcacagatg aggaaacagt tccagagact tcg
//
LOCUS       XM_032620433            1512 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus fumarylacetoacetate hydrolase (FAH),
            transcript variant X6, mRNA.
ACCESSION   XM_032620433
VERSION     XM_032620433.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1512
                     /gene="FAH"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747836"
     CDS             151..1344
                     /gene="FAH"
                     /codon_start=1
                     /product="fumarylacetoacetase isoform X5"
                     /protein_id="XP_032476324.1"
                     /db_xref="GeneID:116747836"
                     /translation="MKFHLPRPRIGVAIGDQILDLSVIKHLFTGPVLSQHQDVFDQPA
                     LNSFMGLGQAAWKEARGLLQNLLSASQARLRDDTELRKRAFTSQASATMHLPATIGDY
                     TDFYSSRHHATNVGVMFRGTENPLMPNWLHLPVGYHGRASSIVVSGTPIRRPKGQMRP
                     DDSKPPVYGACKLLDFELETAFFVGPGNKFGEPIPISKAHEHIFGMVLMNDWSARDIQ
                     KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNQEQDPKPLPYLRHDQPYTFDIN
                     LSVTLKGEGMNQAATICRSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGPEP
                     ESFGCMLELSWKGTRAIEVGNGQTRKFLLDGDEVIITGQCQGDGYRIGFGQCVGKVLP
                     ALSAA"
     misc_feature    163..1332
                     /gene="FAH"
                     /note="fumarylacetoacetase; Region: fum_ac_acetase;
                     TIGR01266"
                     /db_xref="CDD:162276"
ORIGIN      
        1 tactgcctac tccgaagtca tttggctttg tcgtcttccc ccaaggcacc acgttgtaac
       61 cggttgtttt ctcccagctg gacttctttc agctccctgg gctccctggc attcccttgc
      121 tgatcagaag aagccctttt gggcagagaa atgaaatttc acttaccaag accaaggatc
      181 ggcgtggcga ttggtgacca gatcctagac ctcagtgtca ttaagcacct cttcactggg
      241 cctgtcctct cccaacacca ggatgtcttt gatcagccag ctctcaacag cttcatgggc
      301 ctgggtcagg ctgcctggaa ggaggcaagg ggattgttgc agaacctgct gtccgccagc
      361 caagccaggc tcagagatga cacggagctt cggaagcgtg cattcacctc ccaggcttcc
      421 gccacaatgc atcttccggc caccataggc gactacacgg acttctattc ctctcggcac
      481 cacgccacca atgtcggagt catgttcagg ggcacagaga acccgttgat gcccaattgg
      541 ctgcacttac cagtgggcta ccacggccgt gcttcctcca tcgtggtgtc tggcacccca
      601 atccgcaggc ccaagggaca gatgagaccc gatgactcta agcctcctgt gtatggtgcc
      661 tgcaaactct tggacttcga gttggaaaca gctttctttg taggccctgg gaacaaattt
      721 ggagagccga tccccatttc caaggcccac gagcacattt ttggaatggt ccttatgaac
      781 gactggagtg ctcgagacat tcagaagtgg gagtacgtcc ctcttgggcc gttcctcggg
      841 aagagttttg gaaccaccat ctctccgtgg gtggtgccca tggatgccct catgcccttt
      901 gctgtgccca accaggagca ggaccccaag cctctgccgt atctccgcca cgaccagccc
      961 tacacgttcg acatcaacct gtctgtcacc ctgaaaggag aaggaatgaa ccaagcagct
     1021 accatatgca ggtccaattt taagtatatg tactggacga tgttgcagca gctcacccac
     1081 cactctgtca atggctgcaa cctgcggccg ggggacctct tggcttctgg aaccatcagc
     1141 gggccggagc cagagagctt tggctgcatg ctggagctgt cgtggaaggg aacgagggcc
     1201 atagaggtgg ggaatggaca gaccaggaag tttctgctgg acggggatga agtcatcatc
     1261 acaggacagt gccaggggga cgggtaccgc attggctttg gccagtgtgt gggaaaagtg
     1321 ctgccggccc tctcagcggc ctgaggttct ctctgccttc ctggaaacac aagccttgag
     1381 cactgccctc tccacctccc tgcgggggac caggggcccc aatgaggccg cagccctggt
     1441 tcttcattca gtaataaata aagccatcgt gctccctctc catctgggcc tggcacggct
     1501 ctgagtgcgc aa
//
LOCUS       XM_032620448            1700 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger AN1-type containing 6
            (ZFAND6), transcript variant X1, mRNA.
ACCESSION   XM_032620448
VERSION     XM_032620448.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1700
                     /gene="ZFAND6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747858"
     CDS             295..921
                     /gene="ZFAND6"
                     /codon_start=1
                     /product="AN1-type zinc finger protein 6"
                     /protein_id="XP_032476339.1"
                     /db_xref="GeneID:116747858"
                     /translation="MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSS
                     NGRISPPAPSVSSLSESLPVQCTDGSVPETQSALDSTSSSMQPSPVSNQSLLSESVAS
                     SQVDSTSVDKAIPETEDLQASVSETAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTG
                     FECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI"
     misc_feature    328..399
                     /gene="ZFAND6"
                     /note="A20-like zinc finger; Region: zf-A20; pfam01754"
                     /db_xref="CDD:460313"
     misc_feature    739..852
                     /gene="ZFAND6"
                     /note="AN1-like Zinc finger; Region: ZnF_AN1; smart00154"
                     /db_xref="CDD:197545"
ORIGIN      
        1 caaacagaaa agtttaataa acagcaggcg gaggggctgg tggcggcggc cgggccggag
       61 cgagcggggt ttcggtggct tcacctgtcc ccattcaccg gcggcgaccg gcggcggcgg
      121 gcagcgcgtc aggcggtgag agccgccgcc agcccaagaa acagcaggaa agacaacctg
      181 acatagggaa ctggggactg ctatacagag agagaactac aaagcatcct cagtgcggta
      241 ggactttgga ttacaaagtc cctatacttt tatcacagtg tgcaacagag gaacatggct
      301 caagaaacta atcacagcca agtgcctatg ctttgttcca ctggctgcgg attttatgga
      361 aaccctcgta caaatggcat gtgttcagta tgttataaag aacatcttca aagacagaat
      421 agtagtaatg gtagaataag cccacctgca ccttctgtca gtagtctgtc tgagtcttta
      481 ccagttcagt gcacagatgg cagtgtccca gaaactcagt cggcgttaga ctctacatct
      541 tcatctatgc agccaagccc tgtatcaaat cagtcacttt tatcagaatc tgtagcatct
      601 tcccaagtgg acagtacatc tgtggataaa gcaatacctg aaacagaaga cctgcaagct
      661 tcagtatcag aaacggcaca gcagccatct gaagagcaaa gcaagtctct tgaaaaacca
      721 aaacaaaaaa agaatcgctg tttcatgtgc aggaagaaag tgggacttac tgggtttgaa
      781 tgtcggtgtg gaaatgttta ctgtggtgta caccgttact cagatgtaca caattgctct
      841 tacaattaca aagctgatgc tgctgagaaa atcagaaaag aaaatccagt agttgttggt
      901 gaaaagatcc agaagatttg aactcctgga atacaaaatc ctttgaccat ctgcaaacta
      961 aaaattgact tgaggttttt tttcctagtc attgggaatg tagagcaatg tatcttgcat
     1021 agacctttta atcatgcatg tcatcagaag aatagatttt tgtttttgtt ttggaaatga
     1081 ctctgaacat ttatttacat tgcagtttct gtggctgaaa agacttaagt aaactttaca
     1141 agtattatcc ttttaagatc attttaattt tagttgagtg ccgaggactt ttataacaaa
     1201 tgtggagaag tgttggaggg ctgtgatttt tccagtatta aacatgcatg cgttaatctt
     1261 gcagtttatt ttctcattgt gtatgtatat atagcttttc tctgcagcac gatttctctt
     1321 ttgataaatg ccctttaggg cacaactagt tatcagtaac tgaatgtatc ttaatcatta
     1381 tggctgcttc tgtttttcat taacaaaggt tatacatatg ttagcatata gtttctttgc
     1441 acccactatt tatgtctgaa tcatttgtca caggagagtg tgtgctgaag agattctaag
     1501 tttgtgtgtt tttaaatttt tttgagcaag ggaaggaaaa gctgtatgca tttcattgct
     1561 gactgcaggt ttctttcaga ttatgttcat tggtctgtgt gtatacaata tgaagaatga
     1621 tctgaagtaa ttgtgctgta tttatgttta tctaccagtc tttgattaaa taaaaaggaa
     1681 aaccataatg ttcccttgta
//
LOCUS       XM_032620457            1708 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger AN1-type containing 6
            (ZFAND6), transcript variant X2, mRNA.
ACCESSION   XM_032620457
VERSION     XM_032620457.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1708
                     /gene="ZFAND6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 16 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747858"
     CDS             303..929
                     /gene="ZFAND6"
                     /codon_start=1
                     /product="AN1-type zinc finger protein 6"
                     /protein_id="XP_032476348.1"
                     /db_xref="GeneID:116747858"
                     /translation="MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSS
                     NGRISPPAPSVSSLSESLPVQCTDGSVPETQSALDSTSSSMQPSPVSNQSLLSESVAS
                     SQVDSTSVDKAIPETEDLQASVSETAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTG
                     FECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI"
     misc_feature    336..407
                     /gene="ZFAND6"
                     /note="A20-like zinc finger; Region: zf-A20; pfam01754"
                     /db_xref="CDD:460313"
     misc_feature    747..860
                     /gene="ZFAND6"
                     /note="AN1-like Zinc finger; Region: ZnF_AN1; smart00154"
                     /db_xref="CDD:197545"
ORIGIN      
        1 attcaggttt ggttgctttg gagtacagct tcaagtgaag ttaatctgag gtgaagcaaa
       61 cagaaaattg tggaggtttt gttgatgtag atggatctaa atccattctc tggacattag
      121 gatcagctga aggaaattgg gagaattttt acccacttaa cccaagaaac agcaggaaag
      181 acaacctgac atagggaact ggggactgct atacagagag agaactacaa agcatcctca
      241 gtgcggtagg actttggatt acaaagtccc tatactttta tcacagtgtg caacagagga
      301 acatggctca agaaactaat cacagccaag tgcctatgct ttgttccact ggctgcggat
      361 tttatggaaa ccctcgtaca aatggcatgt gttcagtatg ttataaagaa catcttcaaa
      421 gacagaatag tagtaatggt agaataagcc cacctgcacc ttctgtcagt agtctgtctg
      481 agtctttacc agttcagtgc acagatggca gtgtcccaga aactcagtcg gcgttagact
      541 ctacatcttc atctatgcag ccaagccctg tatcaaatca gtcactttta tcagaatctg
      601 tagcatcttc ccaagtggac agtacatctg tggataaagc aatacctgaa acagaagacc
      661 tgcaagcttc agtatcagaa acggcacagc agccatctga agagcaaagc aagtctcttg
      721 aaaaaccaaa acaaaaaaag aatcgctgtt tcatgtgcag gaagaaagtg ggacttactg
      781 ggtttgaatg tcggtgtgga aatgtttact gtggtgtaca ccgttactca gatgtacaca
      841 attgctctta caattacaaa gctgatgctg ctgagaaaat cagaaaagaa aatccagtag
      901 ttgttggtga aaagatccag aagatttgaa ctcctggaat acaaaatcct ttgaccatct
      961 gcaaactaaa aattgacttg aggttttttt tcctagtcat tgggaatgta gagcaatgta
     1021 tcttgcatag accttttaat catgcatgtc atcagaagaa tagatttttg tttttgtttt
     1081 ggaaatgact ctgaacattt atttacattg cagtttctgt ggctgaaaag acttaagtaa
     1141 actttacaag tattatcctt ttaagatcat tttaatttta gttgagtgcc gaggactttt
     1201 ataacaaatg tggagaagtg ttggagggct gtgatttttc cagtattaaa catgcatgcg
     1261 ttaatcttgc agtttatttt ctcattgtgt atgtatatat agcttttctc tgcagcacga
     1321 tttctctttt gataaatgcc ctttagggca caactagtta tcagtaactg aatgtatctt
     1381 aatcattatg gctgcttctg tttttcatta acaaaggtta tacatatgtt agcatatagt
     1441 ttctttgcac ccactattta tgtctgaatc atttgtcaca ggagagtgtg tgctgaagag
     1501 attctaagtt tgtgtgtttt taaatttttt tgagcaaggg aaggaaaagc tgtatgcatt
     1561 tcattgctga ctgcaggttt ctttcagatt atgttcattg gtctgtgtgt atacaatatg
     1621 aagaatgatc tgaagtaatt gtgctgtatt tatgtttatc taccagtctt tgattaaata
     1681 aaaaggaaaa ccataatgtt cccttgta
//
LOCUS       XM_032620468            1767 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger AN1-type containing 6
            (ZFAND6), transcript variant X3, mRNA.
ACCESSION   XM_032620468
VERSION     XM_032620468.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1767
                     /gene="ZFAND6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747858"
     CDS             362..988
                     /gene="ZFAND6"
                     /codon_start=1
                     /product="AN1-type zinc finger protein 6"
                     /protein_id="XP_032476359.1"
                     /db_xref="GeneID:116747858"
                     /translation="MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSS
                     NGRISPPAPSVSSLSESLPVQCTDGSVPETQSALDSTSSSMQPSPVSNQSLLSESVAS
                     SQVDSTSVDKAIPETEDLQASVSETAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTG
                     FECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI"
     misc_feature    395..466
                     /gene="ZFAND6"
                     /note="A20-like zinc finger; Region: zf-A20; pfam01754"
                     /db_xref="CDD:460313"
     misc_feature    806..919
                     /gene="ZFAND6"
                     /note="AN1-like Zinc finger; Region: ZnF_AN1; smart00154"
                     /db_xref="CDD:197545"
ORIGIN      
        1 aagtttaata aacagcaggc ggaggggctg gtggcggcgg ccgggccgga gcgagcgggg
       61 tttcggtggc ttcacctgtc cccattcacc ggcggcgacc ggcggcggcg ggcagcgcgt
      121 caggcggtga gagccgccgc cagatgtaga tggatctaaa tccattctct ggacattagg
      181 atcagctgaa ggaaattggg agaattttta cccacttaac ccaagaaaca gcaggaaaga
      241 caacctgaca tagggaactg gggactgcta tacagagaga gaactacaaa gcatcctcag
      301 tgcggtagga ctttggatta caaagtccct atacttttat cacagtgtgc aacagaggaa
      361 catggctcaa gaaactaatc acagccaagt gcctatgctt tgttccactg gctgcggatt
      421 ttatggaaac cctcgtacaa atggcatgtg ttcagtatgt tataaagaac atcttcaaag
      481 acagaatagt agtaatggta gaataagccc acctgcacct tctgtcagta gtctgtctga
      541 gtctttacca gttcagtgca cagatggcag tgtcccagaa actcagtcgg cgttagactc
      601 tacatcttca tctatgcagc caagccctgt atcaaatcag tcacttttat cagaatctgt
      661 agcatcttcc caagtggaca gtacatctgt ggataaagca atacctgaaa cagaagacct
      721 gcaagcttca gtatcagaaa cggcacagca gccatctgaa gagcaaagca agtctcttga
      781 aaaaccaaaa caaaaaaaga atcgctgttt catgtgcagg aagaaagtgg gacttactgg
      841 gtttgaatgt cggtgtggaa atgtttactg tggtgtacac cgttactcag atgtacacaa
      901 ttgctcttac aattacaaag ctgatgctgc tgagaaaatc agaaaagaaa atccagtagt
      961 tgttggtgaa aagatccaga agatttgaac tcctggaata caaaatcctt tgaccatctg
     1021 caaactaaaa attgacttga ggtttttttt cctagtcatt gggaatgtag agcaatgtat
     1081 cttgcataga ccttttaatc atgcatgtca tcagaagaat agatttttgt ttttgttttg
     1141 gaaatgactc tgaacattta tttacattgc agtttctgtg gctgaaaaga cttaagtaaa
     1201 ctttacaagt attatccttt taagatcatt ttaattttag ttgagtgccg aggactttta
     1261 taacaaatgt ggagaagtgt tggagggctg tgatttttcc agtattaaac atgcatgcgt
     1321 taatcttgca gtttattttc tcattgtgta tgtatatata gcttttctct gcagcacgat
     1381 ttctcttttg ataaatgccc tttagggcac aactagttat cagtaactga atgtatctta
     1441 atcattatgg ctgcttctgt ttttcattaa caaaggttat acatatgtta gcatatagtt
     1501 tctttgcacc cactatttat gtctgaatca tttgtcacag gagagtgtgt gctgaagaga
     1561 ttctaagttt gtgtgttttt aaattttttt gagcaaggga aggaaaagct gtatgcattt
     1621 cattgctgac tgcaggtttc tttcagatta tgttcattgg tctgtgtgta tacaatatga
     1681 agaatgatct gaagtaattg tgctgtattt atgtttatct accagtcttt gattaaataa
     1741 aaaggaaaac cataatgttc ccttgta
//
LOCUS       XM_032620476            1668 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus zinc finger AN1-type containing 6
            (ZFAND6), transcript variant X4, mRNA.
ACCESSION   XM_032620476
VERSION     XM_032620476.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1668
                     /gene="ZFAND6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 3 long SRA reads, 16
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747858"
     CDS             263..889
                     /gene="ZFAND6"
                     /codon_start=1
                     /product="AN1-type zinc finger protein 6"
                     /protein_id="XP_032476367.1"
                     /db_xref="GeneID:116747858"
                     /translation="MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSS
                     NGRISPPAPSVSSLSESLPVQCTDGSVPETQSALDSTSSSMQPSPVSNQSLLSESVAS
                     SQVDSTSVDKAIPETEDLQASVSETAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTG
                     FECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI"
     misc_feature    296..367
                     /gene="ZFAND6"
                     /note="A20-like zinc finger; Region: zf-A20; pfam01754"
                     /db_xref="CDD:460313"
     misc_feature    707..820
                     /gene="ZFAND6"
                     /note="AN1-like Zinc finger; Region: ZnF_AN1; smart00154"
                     /db_xref="CDD:197545"
ORIGIN      
        1 ataattaggc tgcgggcggg gggtgctgcg tcagcgctag gagccggcca atcccggagc
       61 tctccacggc ggccgcgtca caggccgaac aaccaaacag aaaagtttaa taaacagcag
      121 gcggaggggc tggtggcggc ggccgggccg gagcgagcgg ggtttcggtg gcttcacctg
      181 tccccattca ccggcggcga ccggcggcgg cgggcagcgc gtcaggcggt gagagccgcc
      241 gccaggtgtg caacagagga acatggctca agaaactaat cacagccaag tgcctatgct
      301 ttgttccact ggctgcggat tttatggaaa ccctcgtaca aatggcatgt gttcagtatg
      361 ttataaagaa catcttcaaa gacagaatag tagtaatggt agaataagcc cacctgcacc
      421 ttctgtcagt agtctgtctg agtctttacc agttcagtgc acagatggca gtgtcccaga
      481 aactcagtcg gcgttagact ctacatcttc atctatgcag ccaagccctg tatcaaatca
      541 gtcactttta tcagaatctg tagcatcttc ccaagtggac agtacatctg tggataaagc
      601 aatacctgaa acagaagacc tgcaagcttc agtatcagaa acggcacagc agccatctga
      661 agagcaaagc aagtctcttg aaaaaccaaa acaaaaaaag aatcgctgtt tcatgtgcag
      721 gaagaaagtg ggacttactg ggtttgaatg tcggtgtgga aatgtttact gtggtgtaca
      781 ccgttactca gatgtacaca attgctctta caattacaaa gctgatgctg ctgagaaaat
      841 cagaaaagaa aatccagtag ttgttggtga aaagatccag aagatttgaa ctcctggaat
      901 acaaaatcct ttgaccatct gcaaactaaa aattgacttg aggttttttt tcctagtcat
      961 tgggaatgta gagcaatgta tcttgcatag accttttaat catgcatgtc atcagaagaa
     1021 tagatttttg tttttgtttt ggaaatgact ctgaacattt atttacattg cagtttctgt
     1081 ggctgaaaag acttaagtaa actttacaag tattatcctt ttaagatcat tttaatttta
     1141 gttgagtgcc gaggactttt ataacaaatg tggagaagtg ttggagggct gtgatttttc
     1201 cagtattaaa catgcatgcg ttaatcttgc agtttatttt ctcattgtgt atgtatatat
     1261 agcttttctc tgcagcacga tttctctttt gataaatgcc ctttagggca caactagtta
     1321 tcagtaactg aatgtatctt aatcattatg gctgcttctg tttttcatta acaaaggtta
     1381 tacatatgtt agcatatagt ttctttgcac ccactattta tgtctgaatc atttgtcaca
     1441 ggagagtgtg tgctgaagag attctaagtt tgtgtgtttt taaatttttt tgagcaaggg
     1501 aaggaaaagc tgtatgcatt tcattgctga ctgcaggttt ctttcagatt atgttcattg
     1561 gtctgtgtgt atacaatatg aagaatgatc tgaagtaatt gtgctgtatt tatgtttatc
     1621 taccagtctt tgattaaata aaaaggaaaa ccataatgtt cccttgta
//
LOCUS       XR_004348127             862 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747873
            (LOC116747873), transcript variant X1, ncRNA.
ACCESSION   XR_004348127
VERSION     XR_004348127.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..862
                     /gene="LOC116747873"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747873"
     ncRNA           1..862
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747873"
                     /product="uncharacterized LOC116747873, transcript variant
                     X1"
                     /db_xref="GeneID:116747873"
ORIGIN      
        1 ataatgaaac ccatttggcc acaaggaaaa atgttcagga ggaaaatgta aggaaagact
       61 gaaaaatggc ctctgtgaag ttcacaaaga tggaaaaatc atatgaggaa acggatgatt
      121 ggagagttta acttgcctaa agctgtcttt ggtgctgtca gaggtggatc tcaaatcttc
      181 ctcctttttg ctgttagtca ccagcatcgc aaagaggatt aaggcacaaa tgctccacaa
      241 ttaattcaat tctcctatca actctgtgga gtagaaacca tgatcgtcaa cgtcatacag
      301 agaagaaagc tgaagcagaa aggggttaag taacttgtcc aaggtcaaac atcttgtcag
      361 tgtcatttta acactagaat atgaaacagg tgagttatat tttctagaat attaatctca
      421 ttaatgtaag ccttccaaac aggcacgact gttcctttcc ccgataaagt ggaaatgcca
      481 tagctgacag attagcacgg tttatgaagg cagaaaggat gagactggaa gcattgtacc
      541 agcccaggag gcagcgtctg gcgtcaaagg gtctgctgtg tcccggaaac ccaacaagac
      601 ttctgttgag cagaagggcg ggccacgcag ccgggggaaa acgaggctga agtcaccagg
      661 ggcagagcct taaatgccaa gctggggatc gctctcggta ggaccaggga ccctgggcct
      721 ggcagctgga ccgaggtctc ccgggcggtg gactccggga cgaggacctt caaagaggag
      781 ggggggctgc ttgcgaaggg tcaaaactgt agtgggagag cccggaagga ttgtgcgggg
      841 gtggagcttg cgaagctgga gt
//
LOCUS       XR_004348128             832 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747873
            (LOC116747873), transcript variant X2, ncRNA.
ACCESSION   XR_004348128
VERSION     XR_004348128.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..832
                     /gene="LOC116747873"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116747873"
     ncRNA           1..832
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747873"
                     /product="uncharacterized LOC116747873, transcript variant
                     X2"
                     /db_xref="GeneID:116747873"
ORIGIN      
        1 cacagctaaa gctcaaaaag accctgaaaa ttcagatggg aaaaggaaaa atttggatgg
       61 gaaaactctt caatgaggaa acggatgatt ggagagttta acttgcctaa agctgtcttt
      121 ggtgctgtca gaggtggatc tcaaatcttc ctcctttttg ctgttagtca ccagcatcgc
      181 aaagaggatt aaggcacaaa tgctccacaa ttaattcaat tctcctatca actctgtgga
      241 gtagaaacca tgatcgtcaa cgtcatacag agaagaaagc tgaagcagaa aggggttaag
      301 taacttgtcc aaggtcaaac atcttgtcag tgtcatttta acactagaat atgaaacagg
      361 tgagttatat tttctagaat attaatctca ttaatgtaag ccttccaaac aggcacgact
      421 gttcctttcc ccgataaagt ggaaatgcca tagctgacag attagcacgg tttatgaagg
      481 cagaaaggat gagactggaa gcattgtacc agcccaggag gcagcgtctg gcgtcaaagg
      541 gtctgctgtg tcccggaaac ccaacaagac ttctgttgag cagaagggcg ggccacgcag
      601 ccgggggaaa acgaggctga agtcaccagg ggcagagcct taaatgccaa gctggggatc
      661 gctctcggta ggaccaggga ccctgggcct ggcagctgga ccgaggtctc ccgggcggtg
      721 gactccggga cgaggacctt caaagaggag ggggggctgc ttgcgaaggg tcaaaactgt
      781 agtgggagag cccggaagga ttgtgcgggg gtggagcttg cgaagctgga gt
//
LOCUS       XM_032620503            3459 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X1, mRNA.
ACCESSION   XM_032620503
VERSION     XM_032620503.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3459
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3459
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 28
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             589..2850
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X1"
                     /protein_id="XP_032476394.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR
                     EVRIMKILNHPNIVKLFEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFR
                     QIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPY
                     AAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
                     STDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDI
                     MVGMGYSQDEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSD
                     LNNSTGQSPHHKVQRSVSSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGV
                     PSRKPGGSAAGGKGVAPASPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTY
                     VCSERTTADRHSVIHNGKENSTIPDQRAPVASTHSISSATTPDRTRFPRGTASRSTFH
                     GQPRERRTATYNGPPASPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRRNMSFRFIKR
                     LPTEYERNGRYEGSSRNVSAEQKEENKEAKPRSLRFTWSMKTTSSMDPNDMMREIRKV
                     LDANNCDYEQRERFLLFCVHGDGHAESLVQWEMEVCKLPRLSLNGVRFKRISGTSIAF
                     KNIASKIANELKL"
     misc_feature    751..1509
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(772..786,796..798,835..837,841..843,934..936,
                     982..993,1003..1005,1009..1014,1018..1020,1117..1122,
                     1126..1128,1132..1137,1141..1143,1171..1176,1183..1185,
                     1222..1239,1243..1245,1333..1344,1348..1350)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(772..783,796..798,835..837,841..843,934..936,
                     982..993,1003..1005,1132..1137,1141..1143,1171..1176)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(784..786,1003..1005,1009..1011,1117..1122,
                     1126..1128,1132..1134,1183..1185,1225..1239,1243..1245)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1171..1239
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1561..1689
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2548..2841
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2554..2556,2563..2565,2773..2775,2779..2784)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 cgtgaggctc ggaggtgctg ggggcggcgg tgttggtggc cactgggcgg aggctgaggc
       61 ggaaagcgag ccggagggag aagaacagcc gggtgtaggc gccgcctccg cagccccatc
      121 catggtcggc gcccgcagcc cgcggggacc tgtcttgcac tccacctcct ccacatcctc
      181 ctcttcttca ggggccgccg gcggcgctgt gtggaggctc cggcgctgaa atccgcggcg
      241 cgacgggcgg gggcggagga ggaggcgagg gggtccgggc ccgcggggcg cccggaggcg
      301 cggggacgcc agtgggccga cccgcagccc gccgccgccg gcccggcctc gccaccgccg
      361 cccgcggggc tcctcggcgc ggccgccggg gccgggggag catgagcccc gcgacccgcc
      421 gggggacggc ccgggcccga cccgggatct agacggccgt gggggagggg agccgccctg
      481 ccgcggcgcc gctccggaac cgccgggccc tcgacgccgc ttctccggcc cccgggaccg
      541 cgctgttttg tttcaccctc gcgttgtgca gaagtgaagt gaagtaaaat gtccactagg
      601 accccgctgc cgacggtgaa tgaacgggac actgagaacc acacgtcaca tggagacggg
      661 cggcaagaag ttacctctcg cactgggcgc tccggagcac gatgtagaaa ctctgtagct
      721 tcctgtgcag atgaacagcc tcacattgga aactacagac tgttgaaaac aatcggcaag
      781 gggaattttg caaaagtgaa attggcaaga cacatcctta caggcagaga ggtcgcaata
      841 aaaataattg acaaaactca gttgaatcca acaagtctac aaaagctctt cagagaagta
      901 agaataatga agattttaaa tcatccaaac atagtgaagt tattcgaagt cattgaaact
      961 gacaaaacac tctacctaat catggagtat gccagtggag gtgaagtgtt tgactatttg
     1021 gttgcacatg gaagaatgaa ggaaaaagaa gcaagagcta aatttagaca gatagtgtct
     1081 gcagtccagt actgccacca aaagcggatc gtccacagag acctcaaggc tgaaaatcta
     1141 ttgttagatg ctgatatgaa cattaaaata gctgactttg gttttagcaa tgaatttact
     1201 gttggcagta aactggatac gttttgtggc agtcctccgt atgcagcccc agagctcttc
     1261 cagggcaaga aatacgatgg gccggaagtg gacgtgtgga gcctcggcgt cattctttac
     1321 actctagtca gcgggtcact cccctttgat ggacagaacc taaaggaact gagagagaga
     1381 gtattaagag ggaaatacag aatccctttc tacatgtcca cagactgtga aaaccttctc
     1441 aaacgtttcc tggtgctaaa tccaataaaa cgaggcactc tagagcaaat catgaaggac
     1501 aggtggatca atgcagggca tgaggaagat gaactaaaac catttgttga accagaactg
     1561 gacatctcag accagaaaag aatagatatt atggtgggaa tgggatattc acaagacgaa
     1621 attcaagaat ctcttagtaa gatgaaatat gatgaaatca cagctaccta cttgttgttg
     1681 gggagaaaat cttcagagct ggatgctagt gattccagtt ctagcagcaa tctttcactt
     1741 gctaaggtta ggccaagcag tgacctcaac aacagtactg gccagtctcc tcaccacaaa
     1801 gtccagagaa gtgtttcttc aagccagaag cagaggcggt acagcgacca tgctggacca
     1861 gctattcctt cagttgtggc gtatccgaaa aggagtcaga ccagcactgc agacggcgac
     1921 ctcagagaag atggagttcc ctcccggaaa ccaggcggca gtgctgctgg aggaaaggga
     1981 gttgctccag ccagtcccat gcttgggagt gcaagtaatc ccaacaaggc agatattcct
     2041 gaacgcaaga agagctccac cgtccctggt agtaatacag catctggtgg aatgacgcgg
     2101 cggaatactt atgtttgcag tgaaagaact acagctgata gacattcagt aattcataat
     2161 ggcaaagaaa acagcactat tcctgaccag agggctccag ttgcttcaac acacagtatt
     2221 agcagcgcca ccaccccaga tcgaacccgc ttcccaagag gcactgccag tcgtagcact
     2281 ttccacggcc agccccggga gcggcgcact gccacgtata acggcccgcc tgcttcaccc
     2341 agcctgtccc atgaagccac accattgtcg cagactcgaa gccgaggctc cactaatctt
     2401 tttagtaaat taacttccaa actcacgagg agaaacatgt cattcaggtt tatcaaaagg
     2461 cttccaactg aatatgagag gaacgggaga tatgagggct caagtcgcaa cgtatctgct
     2521 gagcaaaagg aggaaaacaa agaagcaaaa cctcgttccc tgcgctttac ctggagcatg
     2581 aaaaccacta gttccatgga tcccaatgac atgatgcggg aaatccgcaa agtgctggac
     2641 gccaataact gtgactacga gcagagagag cgcttcttac tcttctgtgt ccacggcgac
     2701 gggcacgcgg agagcctcgt gcagtgggag atggaagtgt gcaagctgcc aagactgtct
     2761 ctgaacgggg tccggtttaa gcggatatca gggacgtcca tagctttcaa aaatatcgct
     2821 tccaaaattg ccaatgagct aaagctgtaa cccagtaatt atggtgtaaa ttaagtagca
     2881 gtttaaagtg ttttcctgaa cactgatgga aatgtataga ataatattta ggcaataacg
     2941 tctgcatctt ctaaatcatg atattaaaat ataaggacga gagcacgcct gggagcgaaa
     3001 gctggccttt tttctacgaa tgcactacat taaagacgtg tgacacgtgt gccctctgtc
     3061 ttatttccat tgccctgaaa gtcagcgtgt gacatccatc tccacgtgcc tcctgtctgt
     3121 gcgggtgtga gagtggacgg tgtgtgtgtg aagtagtgct acggaagcat ctccttacac
     3181 tggcaaccag agttgttacg agtacctctg tgggagatta tttggtgcta aaacattaaa
     3241 attgccaagg aggaaaatac tgaattacta ctaagaatta actttaagac tagttggtaa
     3301 ttaatgcagg tttacagttc atgcctgtgg ttttgtgttt gttgtttcgt gttttttttt
     3361 agtgcaaaag gtttaaattt atagttgtga acattgcttg tgtgtgtttt tctaagtaga
     3421 ttcacaagat aattaaaaat tcactttttc tgagtaaaa
//
LOCUS       XM_032620511            3483 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X2, mRNA.
ACCESSION   XM_032620511
VERSION     XM_032620511.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3483
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3483
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 28
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             640..2874
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X2"
                     /protein_id="XP_032476402.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR
                     EVRIMKILNHPNIVKLFEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFR
                     QIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPY
                     AAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
                     STDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDI
                     MVGMGYSQDEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSD
                     LNNSTGQSPHHKVQRSVSSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGV
                     PSRKPGGSAAGGKGVAPASPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTY
                     VCSERTTADRHSVIHNGKENSTIPDQRAPVASTHSISSATTPDRTRFPRGTASRSTFH
                     GQPRERRTATYNGPPASPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRRLPTEYERNG
                     RYEGSSRNVSAEQKEENKEAKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYE
                     QRERFLLFCVHGDGHAESLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIAN
                     ELKL"
     misc_feature    802..1560
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(823..837,847..849,886..888,892..894,985..987,
                     1033..1044,1054..1056,1060..1065,1069..1071,1168..1173,
                     1177..1179,1183..1188,1192..1194,1222..1227,1234..1236,
                     1273..1290,1294..1296,1384..1395,1399..1401)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(823..834,847..849,886..888,892..894,985..987,
                     1033..1044,1054..1056,1183..1188,1192..1194,1222..1227)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(835..837,1054..1056,1060..1062,1168..1173,
                     1177..1179,1183..1185,1234..1236,1276..1290,1294..1296)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1222..1290
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1612..1740
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2572..2865
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2578..2580,2587..2589,2797..2799,2803..2808)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 ttccggcatc cggaggcagc aaaggaagcc gaggggcggc catcttgggt ccgtgaggct
       61 cggaggtgct gggggcggcg gtgttggtgg ccactgggcg gaggctgagg cggaaagcga
      121 gccggaggga gaagaacagc cgggtgtagg cgccgcctcc gcagccccat ccatggtcgg
      181 cgcccgcagc ccgcggggac ctgtcttgca ctccacctcc tccacatcct cctcttcttc
      241 aggggccgcc ggcggcgctg tgtggaggct ccggcgctga aatccgcggc gcgacgggcg
      301 ggggcggagg aggaggcgag ggggtccggg cccgcggggc gcccggaggc gcggggacgc
      361 cagtgggccg acccgcagcc cgccgccgcc ggcccggcct cgccaccgcc gcccgcgggg
      421 ctcctcggcg cggccgccgg ggccggggga gcatgagccc cgcgacccgc cgggggacgg
      481 cccgggcccg acccgggatc tagacggccg tgggggaggg gagccgccct gccgcggcgc
      541 cgctccggaa ccgccgggcc ctcgacgccg cttctccggc ccccgggacc gcgctgtttt
      601 gtttcaccct cgcgttgtgc agaagtgaag tgaagtaaaa tgtccactag gaccccgctg
      661 ccgacggtga atgaacggga cactgagaac cacacgtcac atggagacgg gcggcaagaa
      721 gttacctctc gcactgggcg ctccggagca cgatgtagaa actctgtagc ttcctgtgca
      781 gatgaacagc ctcacattgg aaactacaga ctgttgaaaa caatcggcaa ggggaatttt
      841 gcaaaagtga aattggcaag acacatcctt acaggcagag aggtcgcaat aaaaataatt
      901 gacaaaactc agttgaatcc aacaagtcta caaaagctct tcagagaagt aagaataatg
      961 aagattttaa atcatccaaa catagtgaag ttattcgaag tcattgaaac tgacaaaaca
     1021 ctctacctaa tcatggagta tgccagtgga ggtgaagtgt ttgactattt ggttgcacat
     1081 ggaagaatga aggaaaaaga agcaagagct aaatttagac agatagtgtc tgcagtccag
     1141 tactgccacc aaaagcggat cgtccacaga gacctcaagg ctgaaaatct attgttagat
     1201 gctgatatga acattaaaat agctgacttt ggttttagca atgaatttac tgttggcagt
     1261 aaactggata cgttttgtgg cagtcctccg tatgcagccc cagagctctt ccagggcaag
     1321 aaatacgatg ggccggaagt ggacgtgtgg agcctcggcg tcattcttta cactctagtc
     1381 agcgggtcac tcccctttga tggacagaac ctaaaggaac tgagagagag agtattaaga
     1441 gggaaataca gaatcccttt ctacatgtcc acagactgtg aaaaccttct caaacgtttc
     1501 ctggtgctaa atccaataaa acgaggcact ctagagcaaa tcatgaagga caggtggatc
     1561 aatgcagggc atgaggaaga tgaactaaaa ccatttgttg aaccagaact ggacatctca
     1621 gaccagaaaa gaatagatat tatggtggga atgggatatt cacaagacga aattcaagaa
     1681 tctcttagta agatgaaata tgatgaaatc acagctacct acttgttgtt ggggagaaaa
     1741 tcttcagagc tggatgctag tgattccagt tctagcagca atctttcact tgctaaggtt
     1801 aggccaagca gtgacctcaa caacagtact ggccagtctc ctcaccacaa agtccagaga
     1861 agtgtttctt caagccagaa gcagaggcgg tacagcgacc atgctggacc agctattcct
     1921 tcagttgtgg cgtatccgaa aaggagtcag accagcactg cagacggcga cctcagagaa
     1981 gatggagttc cctcccggaa accaggcggc agtgctgctg gaggaaaggg agttgctcca
     2041 gccagtccca tgcttgggag tgcaagtaat cccaacaagg cagatattcc tgaacgcaag
     2101 aagagctcca ccgtccctgg tagtaataca gcatctggtg gaatgacgcg gcggaatact
     2161 tatgtttgca gtgaaagaac tacagctgat agacattcag taattcataa tggcaaagaa
     2221 aacagcacta ttcctgacca gagggctcca gttgcttcaa cacacagtat tagcagcgcc
     2281 accaccccag atcgaacccg cttcccaaga ggcactgcca gtcgtagcac tttccacggc
     2341 cagccccggg agcggcgcac tgccacgtat aacggcccgc ctgcttcacc cagcctgtcc
     2401 catgaagcca caccattgtc gcagactcga agccgaggct ccactaatct ttttagtaaa
     2461 ttaacttcca aactcacgag gaggcttcca actgaatatg agaggaacgg gagatatgag
     2521 ggctcaagtc gcaacgtatc tgctgagcaa aaggaggaaa acaaagaagc aaaacctcgt
     2581 tccctgcgct ttacctggag catgaaaacc actagttcca tggatcccaa tgacatgatg
     2641 cgggaaatcc gcaaagtgct ggacgccaat aactgtgact acgagcagag agagcgcttc
     2701 ttactcttct gtgtccacgg cgacgggcac gcggagagcc tcgtgcagtg ggagatggaa
     2761 gtgtgcaagc tgccaagact gtctctgaac ggggtccggt ttaagcggat atcagggacg
     2821 tccatagctt tcaaaaatat cgcttccaaa attgccaatg agctaaagct gtaacccagt
     2881 aattatggtg taaattaagt agcagtttaa agtgttttcc tgaacactga tggaaatgta
     2941 tagaataata tttaggcaat aacgtctgca tcttctaaat catgatatta aaatataagg
     3001 acgagagcac gcctgggagc gaaagctggc cttttttcta cgaatgcact acattaaaga
     3061 cgtgtgacac gtgtgccctc tgtcttattt ccattgccct gaaagtcagc gtgtgacatc
     3121 catctccacg tgcctcctgt ctgtgcgggt gtgagagtgg acggtgtgtg tgtgaagtag
     3181 tgctacggaa gcatctcctt acactggcaa ccagagttgt tacgagtacc tctgtgggag
     3241 attatttggt gctaaaacat taaaattgcc aaggaggaaa atactgaatt actactaaga
     3301 attaacttta agactagttg gtaattaatg caggtttaca gttcatgcct gtggttttgt
     3361 gtttgttgtt tcgtgttttt ttttagtgca aaaggtttaa atttatagtt gtgaacattg
     3421 cttgtgtgtg tttttctaag tagattcaca agataattaa aaattcactt tttctgagta
     3481 aaa
//
LOCUS       XM_032620518            3414 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X3, mRNA.
ACCESSION   XM_032620518
VERSION     XM_032620518.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3414
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3414
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 25 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             589..2805
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X3"
                     /protein_id="XP_032476409.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR
                     EVRIMKILNHPNIVKLFEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFR
                     QIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPY
                     AAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
                     STDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDI
                     MVGMGYSQDEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSD
                     LNNSTGQSPHHKVQRSVSSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGV
                     PSRKPGGSAAGGKGVAPASPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTY
                     VCSERTTADRHSVIHNGKENSTIPDQRAPVASTHSISSATTPDRTRFPRGTASRSTFH
                     GQPRERRTATYNGPPASPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRRNMSFRFIKS
                     RNVSAEQKEENKEAKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQRERFL
                     LFCVHGDGHAESLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL"
     misc_feature    751..1509
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(772..786,796..798,835..837,841..843,934..936,
                     982..993,1003..1005,1009..1014,1018..1020,1117..1122,
                     1126..1128,1132..1137,1141..1143,1171..1176,1183..1185,
                     1222..1239,1243..1245,1333..1344,1348..1350)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(772..783,796..798,835..837,841..843,934..936,
                     982..993,1003..1005,1132..1137,1141..1143,1171..1176)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(784..786,1003..1005,1009..1011,1117..1122,
                     1126..1128,1132..1134,1183..1185,1225..1239,1243..1245)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1171..1239
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1561..1689
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2503..2796
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2509..2511,2518..2520,2728..2730,2734..2739)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 cgtgaggctc ggaggtgctg ggggcggcgg tgttggtggc cactgggcgg aggctgaggc
       61 ggaaagcgag ccggagggag aagaacagcc gggtgtaggc gccgcctccg cagccccatc
      121 catggtcggc gcccgcagcc cgcggggacc tgtcttgcac tccacctcct ccacatcctc
      181 ctcttcttca ggggccgccg gcggcgctgt gtggaggctc cggcgctgaa atccgcggcg
      241 cgacgggcgg gggcggagga ggaggcgagg gggtccgggc ccgcggggcg cccggaggcg
      301 cggggacgcc agtgggccga cccgcagccc gccgccgccg gcccggcctc gccaccgccg
      361 cccgcggggc tcctcggcgc ggccgccggg gccgggggag catgagcccc gcgacccgcc
      421 gggggacggc ccgggcccga cccgggatct agacggccgt gggggagggg agccgccctg
      481 ccgcggcgcc gctccggaac cgccgggccc tcgacgccgc ttctccggcc cccgggaccg
      541 cgctgttttg tttcaccctc gcgttgtgca gaagtgaagt gaagtaaaat gtccactagg
      601 accccgctgc cgacggtgaa tgaacgggac actgagaacc acacgtcaca tggagacggg
      661 cggcaagaag ttacctctcg cactgggcgc tccggagcac gatgtagaaa ctctgtagct
      721 tcctgtgcag atgaacagcc tcacattgga aactacagac tgttgaaaac aatcggcaag
      781 gggaattttg caaaagtgaa attggcaaga cacatcctta caggcagaga ggtcgcaata
      841 aaaataattg acaaaactca gttgaatcca acaagtctac aaaagctctt cagagaagta
      901 agaataatga agattttaaa tcatccaaac atagtgaagt tattcgaagt cattgaaact
      961 gacaaaacac tctacctaat catggagtat gccagtggag gtgaagtgtt tgactatttg
     1021 gttgcacatg gaagaatgaa ggaaaaagaa gcaagagcta aatttagaca gatagtgtct
     1081 gcagtccagt actgccacca aaagcggatc gtccacagag acctcaaggc tgaaaatcta
     1141 ttgttagatg ctgatatgaa cattaaaata gctgactttg gttttagcaa tgaatttact
     1201 gttggcagta aactggatac gttttgtggc agtcctccgt atgcagcccc agagctcttc
     1261 cagggcaaga aatacgatgg gccggaagtg gacgtgtgga gcctcggcgt cattctttac
     1321 actctagtca gcgggtcact cccctttgat ggacagaacc taaaggaact gagagagaga
     1381 gtattaagag ggaaatacag aatccctttc tacatgtcca cagactgtga aaaccttctc
     1441 aaacgtttcc tggtgctaaa tccaataaaa cgaggcactc tagagcaaat catgaaggac
     1501 aggtggatca atgcagggca tgaggaagat gaactaaaac catttgttga accagaactg
     1561 gacatctcag accagaaaag aatagatatt atggtgggaa tgggatattc acaagacgaa
     1621 attcaagaat ctcttagtaa gatgaaatat gatgaaatca cagctaccta cttgttgttg
     1681 gggagaaaat cttcagagct ggatgctagt gattccagtt ctagcagcaa tctttcactt
     1741 gctaaggtta ggccaagcag tgacctcaac aacagtactg gccagtctcc tcaccacaaa
     1801 gtccagagaa gtgtttcttc aagccagaag cagaggcggt acagcgacca tgctggacca
     1861 gctattcctt cagttgtggc gtatccgaaa aggagtcaga ccagcactgc agacggcgac
     1921 ctcagagaag atggagttcc ctcccggaaa ccaggcggca gtgctgctgg aggaaaggga
     1981 gttgctccag ccagtcccat gcttgggagt gcaagtaatc ccaacaaggc agatattcct
     2041 gaacgcaaga agagctccac cgtccctggt agtaatacag catctggtgg aatgacgcgg
     2101 cggaatactt atgtttgcag tgaaagaact acagctgata gacattcagt aattcataat
     2161 ggcaaagaaa acagcactat tcctgaccag agggctccag ttgcttcaac acacagtatt
     2221 agcagcgcca ccaccccaga tcgaacccgc ttcccaagag gcactgccag tcgtagcact
     2281 ttccacggcc agccccggga gcggcgcact gccacgtata acggcccgcc tgcttcaccc
     2341 agcctgtccc atgaagccac accattgtcg cagactcgaa gccgaggctc cactaatctt
     2401 tttagtaaat taacttccaa actcacgagg agaaacatgt cattcaggtt tatcaaaagt
     2461 cgcaacgtat ctgctgagca aaaggaggaa aacaaagaag caaaacctcg ttccctgcgc
     2521 tttacctgga gcatgaaaac cactagttcc atggatccca atgacatgat gcgggaaatc
     2581 cgcaaagtgc tggacgccaa taactgtgac tacgagcaga gagagcgctt cttactcttc
     2641 tgtgtccacg gcgacgggca cgcggagagc ctcgtgcagt gggagatgga agtgtgcaag
     2701 ctgccaagac tgtctctgaa cggggtccgg tttaagcgga tatcagggac gtccatagct
     2761 ttcaaaaata tcgcttccaa aattgccaat gagctaaagc tgtaacccag taattatggt
     2821 gtaaattaag tagcagttta aagtgttttc ctgaacactg atggaaatgt atagaataat
     2881 atttaggcaa taacgtctgc atcttctaaa tcatgatatt aaaatataag gacgagagca
     2941 cgcctgggag cgaaagctgg ccttttttct acgaatgcac tacattaaag acgtgtgaca
     3001 cgtgtgccct ctgtcttatt tccattgccc tgaaagtcag cgtgtgacat ccatctccac
     3061 gtgcctcctg tctgtgcggg tgtgagagtg gacggtgtgt gtgtgaagta gtgctacgga
     3121 agcatctcct tacactggca accagagttg ttacgagtac ctctgtggga gattatttgg
     3181 tgctaaaaca ttaaaattgc caaggaggaa aatactgaat tactactaag aattaacttt
     3241 aagactagtt ggtaattaat gcaggtttac agttcatgcc tgtggttttg tgtttgttgt
     3301 ttcgtgtttt tttttagtgc aaaaggttta aatttatagt tgtgaacatt gcttgtgtgt
     3361 gtttttctaa gtagattcac aagataatta aaaattcact ttttctgagt aaaa
//
LOCUS       XM_032620524            3411 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X4, mRNA.
ACCESSION   XM_032620524
VERSION     XM_032620524.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3411
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             589..2802
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X4"
                     /protein_id="XP_032476415.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR
                     EVRIMKILNHPNIVKLFEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFR
                     QIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPY
                     AAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
                     STDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDI
                     MVGMGYSQDEIQESLSKMKYDEITATYLLLGRKSSEVRPSSDLNNSTGQSPHHKVQRS
                     VSSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGVPSRKPGGSAAGGKGVA
                     PASPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTYVCSERTTADRHSVIHN
                     GKENSTIPDQRAPVASTHSISSATTPDRTRFPRGTASRSTFHGQPRERRTATYNGPPA
                     SPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRRNMSFRFIKRLPTEYERNGRYEGSSR
                     NVSAEQKEENKEAKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQRERFLL
                     FCVHGDGHAESLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL"
     misc_feature    751..1509
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(772..786,796..798,835..837,841..843,934..936,
                     982..993,1003..1005,1009..1014,1018..1020,1117..1122,
                     1126..1128,1132..1137,1141..1143,1171..1176,1183..1185,
                     1222..1239,1243..1245,1333..1344,1348..1350)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(772..783,796..798,835..837,841..843,934..936,
                     982..993,1003..1005,1132..1137,1141..1143,1171..1176)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(784..786,1003..1005,1009..1011,1117..1122,
                     1126..1128,1132..1134,1183..1185,1225..1239,1243..1245)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1171..1239
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1561..1689
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2500..2793
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2506..2508,2515..2517,2725..2727,2731..2736)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 cgtgaggctc ggaggtgctg ggggcggcgg tgttggtggc cactgggcgg aggctgaggc
       61 ggaaagcgag ccggagggag aagaacagcc gggtgtaggc gccgcctccg cagccccatc
      121 catggtcggc gcccgcagcc cgcggggacc tgtcttgcac tccacctcct ccacatcctc
      181 ctcttcttca ggggccgccg gcggcgctgt gtggaggctc cggcgctgaa atccgcggcg
      241 cgacgggcgg gggcggagga ggaggcgagg gggtccgggc ccgcggggcg cccggaggcg
      301 cggggacgcc agtgggccga cccgcagccc gccgccgccg gcccggcctc gccaccgccg
      361 cccgcggggc tcctcggcgc ggccgccggg gccgggggag catgagcccc gcgacccgcc
      421 gggggacggc ccgggcccga cccgggatct agacggccgt gggggagggg agccgccctg
      481 ccgcggcgcc gctccggaac cgccgggccc tcgacgccgc ttctccggcc cccgggaccg
      541 cgctgttttg tttcaccctc gcgttgtgca gaagtgaagt gaagtaaaat gtccactagg
      601 accccgctgc cgacggtgaa tgaacgggac actgagaacc acacgtcaca tggagacggg
      661 cggcaagaag ttacctctcg cactgggcgc tccggagcac gatgtagaaa ctctgtagct
      721 tcctgtgcag atgaacagcc tcacattgga aactacagac tgttgaaaac aatcggcaag
      781 gggaattttg caaaagtgaa attggcaaga cacatcctta caggcagaga ggtcgcaata
      841 aaaataattg acaaaactca gttgaatcca acaagtctac aaaagctctt cagagaagta
      901 agaataatga agattttaaa tcatccaaac atagtgaagt tattcgaagt cattgaaact
      961 gacaaaacac tctacctaat catggagtat gccagtggag gtgaagtgtt tgactatttg
     1021 gttgcacatg gaagaatgaa ggaaaaagaa gcaagagcta aatttagaca gatagtgtct
     1081 gcagtccagt actgccacca aaagcggatc gtccacagag acctcaaggc tgaaaatcta
     1141 ttgttagatg ctgatatgaa cattaaaata gctgactttg gttttagcaa tgaatttact
     1201 gttggcagta aactggatac gttttgtggc agtcctccgt atgcagcccc agagctcttc
     1261 cagggcaaga aatacgatgg gccggaagtg gacgtgtgga gcctcggcgt cattctttac
     1321 actctagtca gcgggtcact cccctttgat ggacagaacc taaaggaact gagagagaga
     1381 gtattaagag ggaaatacag aatccctttc tacatgtcca cagactgtga aaaccttctc
     1441 aaacgtttcc tggtgctaaa tccaataaaa cgaggcactc tagagcaaat catgaaggac
     1501 aggtggatca atgcagggca tgaggaagat gaactaaaac catttgttga accagaactg
     1561 gacatctcag accagaaaag aatagatatt atggtgggaa tgggatattc acaagacgaa
     1621 attcaagaat ctcttagtaa gatgaaatat gatgaaatca cagctaccta cttgttgttg
     1681 gggagaaaat cttcagaggt taggccaagc agtgacctca acaacagtac tggccagtct
     1741 cctcaccaca aagtccagag aagtgtttct tcaagccaga agcagaggcg gtacagcgac
     1801 catgctggac cagctattcc ttcagttgtg gcgtatccga aaaggagtca gaccagcact
     1861 gcagacggcg acctcagaga agatggagtt ccctcccgga aaccaggcgg cagtgctgct
     1921 ggaggaaagg gagttgctcc agccagtccc atgcttggga gtgcaagtaa tcccaacaag
     1981 gcagatattc ctgaacgcaa gaagagctcc accgtccctg gtagtaatac agcatctggt
     2041 ggaatgacgc ggcggaatac ttatgtttgc agtgaaagaa ctacagctga tagacattca
     2101 gtaattcata atggcaaaga aaacagcact attcctgacc agagggctcc agttgcttca
     2161 acacacagta ttagcagcgc caccacccca gatcgaaccc gcttcccaag aggcactgcc
     2221 agtcgtagca ctttccacgg ccagccccgg gagcggcgca ctgccacgta taacggcccg
     2281 cctgcttcac ccagcctgtc ccatgaagcc acaccattgt cgcagactcg aagccgaggc
     2341 tccactaatc tttttagtaa attaacttcc aaactcacga ggagaaacat gtcattcagg
     2401 tttatcaaaa ggcttccaac tgaatatgag aggaacggga gatatgaggg ctcaagtcgc
     2461 aacgtatctg ctgagcaaaa ggaggaaaac aaagaagcaa aacctcgttc cctgcgcttt
     2521 acctggagca tgaaaaccac tagttccatg gatcccaatg acatgatgcg ggaaatccgc
     2581 aaagtgctgg acgccaataa ctgtgactac gagcagagag agcgcttctt actcttctgt
     2641 gtccacggcg acgggcacgc ggagagcctc gtgcagtggg agatggaagt gtgcaagctg
     2701 ccaagactgt ctctgaacgg ggtccggttt aagcggatat cagggacgtc catagctttc
     2761 aaaaatatcg cttccaaaat tgccaatgag ctaaagctgt aacccagtaa ttatggtgta
     2821 aattaagtag cagtttaaag tgttttcctg aacactgatg gaaatgtata gaataatatt
     2881 taggcaataa cgtctgcatc ttctaaatca tgatattaaa atataaggac gagagcacgc
     2941 ctgggagcga aagctggcct tttttctacg aatgcactac attaaagacg tgtgacacgt
     3001 gtgccctctg tcttatttcc attgccctga aagtcagcgt gtgacatcca tctccacgtg
     3061 cctcctgtct gtgcgggtgt gagagtggac ggtgtgtgtg tgaagtagtg ctacggaagc
     3121 atctccttac actggcaacc agagttgtta cgagtacctc tgtgggagat tatttggtgc
     3181 taaaacatta aaattgccaa ggaggaaaat actgaattac tactaagaat taactttaag
     3241 actagttggt aattaatgca ggtttacagt tcatgcctgt ggttttgtgt ttgttgtttc
     3301 gtgttttttt ttagtgcaaa aggtttaaat ttatagttgt gaacattgct tgtgtgtgtt
     3361 tttctaagta gattcacaag ataattaaaa attcactttt tctgagtaaa a
//
LOCUS       XM_032620534            3405 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X5, mRNA.
ACCESSION   XM_032620534
VERSION     XM_032620534.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3405
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3405
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             589..2796
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X5"
                     /protein_id="XP_032476425.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGRELFREVRIMKILNHPNIVKLFE
                     VIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKRIVHRD
                     LKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPYAAPELFQGKKYDGPEVDV
                     WSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIK
                     RGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDIMVGMGYSQDEIQESLSKM
                     KYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSDLNNSTGQSPHHKVQRSVS
                     SSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGVPSRKPGGSAAGGKGVAPA
                     SPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTYVCSERTTADRHSVIHNGK
                     ENSTIPDQRAPVASTHSISSATTPDRTRFPRGTASRSTFHGQPRERRTATYNGPPASP
                     SLSHEATPLSQTRSRGSTNLFSKLTSKLTRRNMSFRFIKRLPTEYERNGRYEGSSRNV
                     SAEQKEENKEAKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQRERFLLFC
                     VHGDGHAESLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL"
     misc_feature    751..1455
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(772..786,796..798,880..882,928..939,949..951,
                     955..960,964..966,1063..1068,1072..1074,1078..1083,
                     1087..1089,1117..1122,1129..1131,1168..1185,1189..1191,
                     1279..1290,1294..1296)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(772..783,796..798,880..882,928..939,949..951,
                     1078..1083,1087..1089,1117..1122)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(784..786,949..951,955..957,1063..1068,1072..1074,
                     1078..1080,1129..1131,1171..1185,1189..1191)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1117..1185
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1507..1635
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2494..2787
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2500..2502,2509..2511,2719..2721,2725..2730)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 cgtgaggctc ggaggtgctg ggggcggcgg tgttggtggc cactgggcgg aggctgaggc
       61 ggaaagcgag ccggagggag aagaacagcc gggtgtaggc gccgcctccg cagccccatc
      121 catggtcggc gcccgcagcc cgcggggacc tgtcttgcac tccacctcct ccacatcctc
      181 ctcttcttca ggggccgccg gcggcgctgt gtggaggctc cggcgctgaa atccgcggcg
      241 cgacgggcgg gggcggagga ggaggcgagg gggtccgggc ccgcggggcg cccggaggcg
      301 cggggacgcc agtgggccga cccgcagccc gccgccgccg gcccggcctc gccaccgccg
      361 cccgcggggc tcctcggcgc ggccgccggg gccgggggag catgagcccc gcgacccgcc
      421 gggggacggc ccgggcccga cccgggatct agacggccgt gggggagggg agccgccctg
      481 ccgcggcgcc gctccggaac cgccgggccc tcgacgccgc ttctccggcc cccgggaccg
      541 cgctgttttg tttcaccctc gcgttgtgca gaagtgaagt gaagtaaaat gtccactagg
      601 accccgctgc cgacggtgaa tgaacgggac actgagaacc acacgtcaca tggagacggg
      661 cggcaagaag ttacctctcg cactgggcgc tccggagcac gatgtagaaa ctctgtagct
      721 tcctgtgcag atgaacagcc tcacattgga aactacagac tgttgaaaac aatcggcaag
      781 gggaattttg caaaagtgaa attggcaaga cacatcctta caggcagaga gctcttcaga
      841 gaagtaagaa taatgaagat tttaaatcat ccaaacatag tgaagttatt cgaagtcatt
      901 gaaactgaca aaacactcta cctaatcatg gagtatgcca gtggaggtga agtgtttgac
      961 tatttggttg cacatggaag aatgaaggaa aaagaagcaa gagctaaatt tagacagata
     1021 gtgtctgcag tccagtactg ccaccaaaag cggatcgtcc acagagacct caaggctgaa
     1081 aatctattgt tagatgctga tatgaacatt aaaatagctg actttggttt tagcaatgaa
     1141 tttactgttg gcagtaaact ggatacgttt tgtggcagtc ctccgtatgc agccccagag
     1201 ctcttccagg gcaagaaata cgatgggccg gaagtggacg tgtggagcct cggcgtcatt
     1261 ctttacactc tagtcagcgg gtcactcccc tttgatggac agaacctaaa ggaactgaga
     1321 gagagagtat taagagggaa atacagaatc cctttctaca tgtccacaga ctgtgaaaac
     1381 cttctcaaac gtttcctggt gctaaatcca ataaaacgag gcactctaga gcaaatcatg
     1441 aaggacaggt ggatcaatgc agggcatgag gaagatgaac taaaaccatt tgttgaacca
     1501 gaactggaca tctcagacca gaaaagaata gatattatgg tgggaatggg atattcacaa
     1561 gacgaaattc aagaatctct tagtaagatg aaatatgatg aaatcacagc tacctacttg
     1621 ttgttgggga gaaaatcttc agagctggat gctagtgatt ccagttctag cagcaatctt
     1681 tcacttgcta aggttaggcc aagcagtgac ctcaacaaca gtactggcca gtctcctcac
     1741 cacaaagtcc agagaagtgt ttcttcaagc cagaagcaga ggcggtacag cgaccatgct
     1801 ggaccagcta ttccttcagt tgtggcgtat ccgaaaagga gtcagaccag cactgcagac
     1861 ggcgacctca gagaagatgg agttccctcc cggaaaccag gcggcagtgc tgctggagga
     1921 aagggagttg ctccagccag tcccatgctt gggagtgcaa gtaatcccaa caaggcagat
     1981 attcctgaac gcaagaagag ctccaccgtc cctggtagta atacagcatc tggtggaatg
     2041 acgcggcgga atacttatgt ttgcagtgaa agaactacag ctgatagaca ttcagtaatt
     2101 cataatggca aagaaaacag cactattcct gaccagaggg ctccagttgc ttcaacacac
     2161 agtattagca gcgccaccac cccagatcga acccgcttcc caagaggcac tgccagtcgt
     2221 agcactttcc acggccagcc ccgggagcgg cgcactgcca cgtataacgg cccgcctgct
     2281 tcacccagcc tgtcccatga agccacacca ttgtcgcaga ctcgaagccg aggctccact
     2341 aatcttttta gtaaattaac ttccaaactc acgaggagaa acatgtcatt caggtttatc
     2401 aaaaggcttc caactgaata tgagaggaac gggagatatg agggctcaag tcgcaacgta
     2461 tctgctgagc aaaaggagga aaacaaagaa gcaaaacctc gttccctgcg ctttacctgg
     2521 agcatgaaaa ccactagttc catggatccc aatgacatga tgcgggaaat ccgcaaagtg
     2581 ctggacgcca ataactgtga ctacgagcag agagagcgct tcttactctt ctgtgtccac
     2641 ggcgacgggc acgcggagag cctcgtgcag tgggagatgg aagtgtgcaa gctgccaaga
     2701 ctgtctctga acggggtccg gtttaagcgg atatcaggga cgtccatagc tttcaaaaat
     2761 atcgcttcca aaattgccaa tgagctaaag ctgtaaccca gtaattatgg tgtaaattaa
     2821 gtagcagttt aaagtgtttt cctgaacact gatggaaatg tatagaataa tatttaggca
     2881 ataacgtctg catcttctaa atcatgatat taaaatataa ggacgagagc acgcctggga
     2941 gcgaaagctg gccttttttc tacgaatgca ctacattaaa gacgtgtgac acgtgtgccc
     3001 tctgtcttat ttccattgcc ctgaaagtca gcgtgtgaca tccatctcca cgtgcctcct
     3061 gtctgtgcgg gtgtgagagt ggacggtgtg tgtgtgaagt agtgctacgg aagcatctcc
     3121 ttacactggc aaccagagtt gttacgagta cctctgtggg agattatttg gtgctaaaac
     3181 attaaaattg ccaaggagga aaatactgaa ttactactaa gaattaactt taagactagt
     3241 tggtaattaa tgcaggttta cagttcatgc ctgtggtttt gtgtttgttg tttcgtgttt
     3301 ttttttagtg caaaaggttt aaatttatag ttgtgaacat tgcttgtgtg tgtttttcta
     3361 agtagattca caagataatt aaaaattcac tttttctgag taaaa
//
LOCUS       XM_032620540            3438 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X6, mRNA.
ACCESSION   XM_032620540
VERSION     XM_032620540.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3438
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 1 long SRA read, 30
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             640..2829
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X6"
                     /protein_id="XP_032476431.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR
                     EVRIMKILNHPNIVKLFEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFR
                     QIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPY
                     AAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
                     STDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDI
                     MVGMGYSQDEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSD
                     LNNSTGQSPHHKVQRSVSSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGV
                     PSRKPGGSAAGGKGVAPASPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTY
                     VCSERTTADRHSVIHNGKENSTIPDQRAPVASTHSISSATTPDRTRFPRGTASRSTFH
                     GQPRERRTATYNGPPASPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRSRNVSAEQKE
                     ENKEAKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQRERFLLFCVHGDGH
                     AESLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL"
     misc_feature    802..1560
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(823..837,847..849,886..888,892..894,985..987,
                     1033..1044,1054..1056,1060..1065,1069..1071,1168..1173,
                     1177..1179,1183..1188,1192..1194,1222..1227,1234..1236,
                     1273..1290,1294..1296,1384..1395,1399..1401)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(823..834,847..849,886..888,892..894,985..987,
                     1033..1044,1054..1056,1183..1188,1192..1194,1222..1227)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(835..837,1054..1056,1060..1062,1168..1173,
                     1177..1179,1183..1185,1234..1236,1276..1290,1294..1296)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1222..1290
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1612..1740
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2527..2820
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2533..2535,2542..2544,2752..2754,2758..2763)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 ttccggcatc cggaggcagc aaaggaagcc gaggggcggc catcttgggt ccgtgaggct
       61 cggaggtgct gggggcggcg gtgttggtgg ccactgggcg gaggctgagg cggaaagcga
      121 gccggaggga gaagaacagc cgggtgtagg cgccgcctcc gcagccccat ccatggtcgg
      181 cgcccgcagc ccgcggggac ctgtcttgca ctccacctcc tccacatcct cctcttcttc
      241 aggggccgcc ggcggcgctg tgtggaggct ccggcgctga aatccgcggc gcgacgggcg
      301 ggggcggagg aggaggcgag ggggtccggg cccgcggggc gcccggaggc gcggggacgc
      361 cagtgggccg acccgcagcc cgccgccgcc ggcccggcct cgccaccgcc gcccgcgggg
      421 ctcctcggcg cggccgccgg ggccggggga gcatgagccc cgcgacccgc cgggggacgg
      481 cccgggcccg acccgggatc tagacggccg tgggggaggg gagccgccct gccgcggcgc
      541 cgctccggaa ccgccgggcc ctcgacgccg cttctccggc ccccgggacc gcgctgtttt
      601 gtttcaccct cgcgttgtgc agaagtgaag tgaagtaaaa tgtccactag gaccccgctg
      661 ccgacggtga atgaacggga cactgagaac cacacgtcac atggagacgg gcggcaagaa
      721 gttacctctc gcactgggcg ctccggagca cgatgtagaa actctgtagc ttcctgtgca
      781 gatgaacagc ctcacattgg aaactacaga ctgttgaaaa caatcggcaa ggggaatttt
      841 gcaaaagtga aattggcaag acacatcctt acaggcagag aggtcgcaat aaaaataatt
      901 gacaaaactc agttgaatcc aacaagtcta caaaagctct tcagagaagt aagaataatg
      961 aagattttaa atcatccaaa catagtgaag ttattcgaag tcattgaaac tgacaaaaca
     1021 ctctacctaa tcatggagta tgccagtgga ggtgaagtgt ttgactattt ggttgcacat
     1081 ggaagaatga aggaaaaaga agcaagagct aaatttagac agatagtgtc tgcagtccag
     1141 tactgccacc aaaagcggat cgtccacaga gacctcaagg ctgaaaatct attgttagat
     1201 gctgatatga acattaaaat agctgacttt ggttttagca atgaatttac tgttggcagt
     1261 aaactggata cgttttgtgg cagtcctccg tatgcagccc cagagctctt ccagggcaag
     1321 aaatacgatg ggccggaagt ggacgtgtgg agcctcggcg tcattcttta cactctagtc
     1381 agcgggtcac tcccctttga tggacagaac ctaaaggaac tgagagagag agtattaaga
     1441 gggaaataca gaatcccttt ctacatgtcc acagactgtg aaaaccttct caaacgtttc
     1501 ctggtgctaa atccaataaa acgaggcact ctagagcaaa tcatgaagga caggtggatc
     1561 aatgcagggc atgaggaaga tgaactaaaa ccatttgttg aaccagaact ggacatctca
     1621 gaccagaaaa gaatagatat tatggtggga atgggatatt cacaagacga aattcaagaa
     1681 tctcttagta agatgaaata tgatgaaatc acagctacct acttgttgtt ggggagaaaa
     1741 tcttcagagc tggatgctag tgattccagt tctagcagca atctttcact tgctaaggtt
     1801 aggccaagca gtgacctcaa caacagtact ggccagtctc ctcaccacaa agtccagaga
     1861 agtgtttctt caagccagaa gcagaggcgg tacagcgacc atgctggacc agctattcct
     1921 tcagttgtgg cgtatccgaa aaggagtcag accagcactg cagacggcga cctcagagaa
     1981 gatggagttc cctcccggaa accaggcggc agtgctgctg gaggaaaggg agttgctcca
     2041 gccagtccca tgcttgggag tgcaagtaat cccaacaagg cagatattcc tgaacgcaag
     2101 aagagctcca ccgtccctgg tagtaataca gcatctggtg gaatgacgcg gcggaatact
     2161 tatgtttgca gtgaaagaac tacagctgat agacattcag taattcataa tggcaaagaa
     2221 aacagcacta ttcctgacca gagggctcca gttgcttcaa cacacagtat tagcagcgcc
     2281 accaccccag atcgaacccg cttcccaaga ggcactgcca gtcgtagcac tttccacggc
     2341 cagccccggg agcggcgcac tgccacgtat aacggcccgc ctgcttcacc cagcctgtcc
     2401 catgaagcca caccattgtc gcagactcga agccgaggct ccactaatct ttttagtaaa
     2461 ttaacttcca aactcacgag gagtcgcaac gtatctgctg agcaaaagga ggaaaacaaa
     2521 gaagcaaaac ctcgttccct gcgctttacc tggagcatga aaaccactag ttccatggat
     2581 cccaatgaca tgatgcggga aatccgcaaa gtgctggacg ccaataactg tgactacgag
     2641 cagagagagc gcttcttact cttctgtgtc cacggcgacg ggcacgcgga gagcctcgtg
     2701 cagtgggaga tggaagtgtg caagctgcca agactgtctc tgaacggggt ccggtttaag
     2761 cggatatcag ggacgtccat agctttcaaa aatatcgctt ccaaaattgc caatgagcta
     2821 aagctgtaac ccagtaatta tggtgtaaat taagtagcag tttaaagtgt tttcctgaac
     2881 actgatggaa atgtatagaa taatatttag gcaataacgt ctgcatcttc taaatcatga
     2941 tattaaaata taaggacgag agcacgcctg ggagcgaaag ctggcctttt ttctacgaat
     3001 gcactacatt aaagacgtgt gacacgtgtg ccctctgtct tatttccatt gccctgaaag
     3061 tcagcgtgtg acatccatct ccacgtgcct cctgtctgtg cgggtgtgag agtggacggt
     3121 gtgtgtgtga agtagtgcta cggaagcatc tccttacact ggcaaccaga gttgttacga
     3181 gtacctctgt gggagattat ttggtgctaa aacattaaaa ttgccaagga ggaaaatact
     3241 gaattactac taagaattaa ctttaagact agttggtaat taatgcaggt ttacagttca
     3301 tgcctgtggt tttgtgtttg ttgtttcgtg ttttttttta gtgcaaaagg tttaaattta
     3361 tagttgtgaa cattgcttgt gtgtgttttt ctaagtagat tcacaagata attaaaaatt
     3421 cactttttct gagtaaaa
//
LOCUS       XM_032620551            3384 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X7, mRNA.
ACCESSION   XM_032620551
VERSION     XM_032620551.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3384
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3384
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             589..2775
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X7"
                     /protein_id="XP_032476442.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR
                     EVRIMKILNHPNIVKLFEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFR
                     QIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPY
                     AAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
                     STDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDI
                     MVGMGYSQDEIQESLSKMKYDEITATYLLLGRKSSEVRPSSDLNNSTGQSPHHKVQRS
                     VSSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGVPSRKPGGSAAGGKGVA
                     PASPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTYVCSERTTADRHSVIHN
                     GKENSTIPDQRAPVASTHSISSATTPDRTRFPRGTASRSTFHGQPRERRTATYNGPPA
                     SPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRRLPTEYERNGRYEGSSRNVSAEQKEE
                     NKEAKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQRERFLLFCVHGDGHA
                     ESLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL"
     misc_feature    751..1509
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(772..786,796..798,835..837,841..843,934..936,
                     982..993,1003..1005,1009..1014,1018..1020,1117..1122,
                     1126..1128,1132..1137,1141..1143,1171..1176,1183..1185,
                     1222..1239,1243..1245,1333..1344,1348..1350)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(772..783,796..798,835..837,841..843,934..936,
                     982..993,1003..1005,1132..1137,1141..1143,1171..1176)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(784..786,1003..1005,1009..1011,1117..1122,
                     1126..1128,1132..1134,1183..1185,1225..1239,1243..1245)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1171..1239
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1561..1689
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2473..2766
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2479..2481,2488..2490,2698..2700,2704..2709)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 cgtgaggctc ggaggtgctg ggggcggcgg tgttggtggc cactgggcgg aggctgaggc
       61 ggaaagcgag ccggagggag aagaacagcc gggtgtaggc gccgcctccg cagccccatc
      121 catggtcggc gcccgcagcc cgcggggacc tgtcttgcac tccacctcct ccacatcctc
      181 ctcttcttca ggggccgccg gcggcgctgt gtggaggctc cggcgctgaa atccgcggcg
      241 cgacgggcgg gggcggagga ggaggcgagg gggtccgggc ccgcggggcg cccggaggcg
      301 cggggacgcc agtgggccga cccgcagccc gccgccgccg gcccggcctc gccaccgccg
      361 cccgcggggc tcctcggcgc ggccgccggg gccgggggag catgagcccc gcgacccgcc
      421 gggggacggc ccgggcccga cccgggatct agacggccgt gggggagggg agccgccctg
      481 ccgcggcgcc gctccggaac cgccgggccc tcgacgccgc ttctccggcc cccgggaccg
      541 cgctgttttg tttcaccctc gcgttgtgca gaagtgaagt gaagtaaaat gtccactagg
      601 accccgctgc cgacggtgaa tgaacgggac actgagaacc acacgtcaca tggagacggg
      661 cggcaagaag ttacctctcg cactgggcgc tccggagcac gatgtagaaa ctctgtagct
      721 tcctgtgcag atgaacagcc tcacattgga aactacagac tgttgaaaac aatcggcaag
      781 gggaattttg caaaagtgaa attggcaaga cacatcctta caggcagaga ggtcgcaata
      841 aaaataattg acaaaactca gttgaatcca acaagtctac aaaagctctt cagagaagta
      901 agaataatga agattttaaa tcatccaaac atagtgaagt tattcgaagt cattgaaact
      961 gacaaaacac tctacctaat catggagtat gccagtggag gtgaagtgtt tgactatttg
     1021 gttgcacatg gaagaatgaa ggaaaaagaa gcaagagcta aatttagaca gatagtgtct
     1081 gcagtccagt actgccacca aaagcggatc gtccacagag acctcaaggc tgaaaatcta
     1141 ttgttagatg ctgatatgaa cattaaaata gctgactttg gttttagcaa tgaatttact
     1201 gttggcagta aactggatac gttttgtggc agtcctccgt atgcagcccc agagctcttc
     1261 cagggcaaga aatacgatgg gccggaagtg gacgtgtgga gcctcggcgt cattctttac
     1321 actctagtca gcgggtcact cccctttgat ggacagaacc taaaggaact gagagagaga
     1381 gtattaagag ggaaatacag aatccctttc tacatgtcca cagactgtga aaaccttctc
     1441 aaacgtttcc tggtgctaaa tccaataaaa cgaggcactc tagagcaaat catgaaggac
     1501 aggtggatca atgcagggca tgaggaagat gaactaaaac catttgttga accagaactg
     1561 gacatctcag accagaaaag aatagatatt atggtgggaa tgggatattc acaagacgaa
     1621 attcaagaat ctcttagtaa gatgaaatat gatgaaatca cagctaccta cttgttgttg
     1681 gggagaaaat cttcagaggt taggccaagc agtgacctca acaacagtac tggccagtct
     1741 cctcaccaca aagtccagag aagtgtttct tcaagccaga agcagaggcg gtacagcgac
     1801 catgctggac cagctattcc ttcagttgtg gcgtatccga aaaggagtca gaccagcact
     1861 gcagacggcg acctcagaga agatggagtt ccctcccgga aaccaggcgg cagtgctgct
     1921 ggaggaaagg gagttgctcc agccagtccc atgcttggga gtgcaagtaa tcccaacaag
     1981 gcagatattc ctgaacgcaa gaagagctcc accgtccctg gtagtaatac agcatctggt
     2041 ggaatgacgc ggcggaatac ttatgtttgc agtgaaagaa ctacagctga tagacattca
     2101 gtaattcata atggcaaaga aaacagcact attcctgacc agagggctcc agttgcttca
     2161 acacacagta ttagcagcgc caccacccca gatcgaaccc gcttcccaag aggcactgcc
     2221 agtcgtagca ctttccacgg ccagccccgg gagcggcgca ctgccacgta taacggcccg
     2281 cctgcttcac ccagcctgtc ccatgaagcc acaccattgt cgcagactcg aagccgaggc
     2341 tccactaatc tttttagtaa attaacttcc aaactcacga ggaggcttcc aactgaatat
     2401 gagaggaacg ggagatatga gggctcaagt cgcaacgtat ctgctgagca aaaggaggaa
     2461 aacaaagaag caaaacctcg ttccctgcgc tttacctgga gcatgaaaac cactagttcc
     2521 atggatccca atgacatgat gcgggaaatc cgcaaagtgc tggacgccaa taactgtgac
     2581 tacgagcaga gagagcgctt cttactcttc tgtgtccacg gcgacgggca cgcggagagc
     2641 ctcgtgcagt gggagatgga agtgtgcaag ctgccaagac tgtctctgaa cggggtccgg
     2701 tttaagcgga tatcagggac gtccatagct ttcaaaaata tcgcttccaa aattgccaat
     2761 gagctaaagc tgtaacccag taattatggt gtaaattaag tagcagttta aagtgttttc
     2821 ctgaacactg atggaaatgt atagaataat atttaggcaa taacgtctgc atcttctaaa
     2881 tcatgatatt aaaatataag gacgagagca cgcctgggag cgaaagctgg ccttttttct
     2941 acgaatgcac tacattaaag acgtgtgaca cgtgtgccct ctgtcttatt tccattgccc
     3001 tgaaagtcag cgtgtgacat ccatctccac gtgcctcctg tctgtgcggg tgtgagagtg
     3061 gacggtgtgt gtgtgaagta gtgctacgga agcatctcct tacactggca accagagttg
     3121 ttacgagtac ctctgtggga gattatttgg tgctaaaaca ttaaaattgc caaggaggaa
     3181 aatactgaat tactactaag aattaacttt aagactagtt ggtaattaat gcaggtttac
     3241 agttcatgcc tgtggttttg tgtttgttgt ttcgtgtttt tttttagtgc aaaaggttta
     3301 aatttatagt tgtgaacatt gcttgtgtgt gtttttctaa gtagattcac aagataatta
     3361 aaaattcact ttttctgagt aaaa
//
LOCUS       XM_032620559            3390 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X8, mRNA.
ACCESSION   XM_032620559
VERSION     XM_032620559.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3390
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3390
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             640..2781
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X8"
                     /protein_id="XP_032476450.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR
                     EVRIMKILNHPNIVKLFEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFR
                     QIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPY
                     AAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
                     STDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDI
                     MVGMGYSQDEIQESLSKMKYDEITATYLLLGRKSSEVRPSSDLNNSTGQSPHHKVQRS
                     VSSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGVPSRKPGGSAAGGKGVA
                     PASPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTYVCSERTTADRHSVIHN
                     GKENSTIPDQRAPVASTHSISSATTPDRTRFPRGTASRSTFHGQPRERRTATYNGPPA
                     SPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRSRNVSAEQKEENKEAKPRSLRFTWSM
                     KTTSSMDPNDMMREIRKVLDANNCDYEQRERFLLFCVHGDGHAESLVQWEMEVCKLPR
                     LSLNGVRFKRISGTSIAFKNIASKIANELKL"
     misc_feature    802..1560
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(823..837,847..849,886..888,892..894,985..987,
                     1033..1044,1054..1056,1060..1065,1069..1071,1168..1173,
                     1177..1179,1183..1188,1192..1194,1222..1227,1234..1236,
                     1273..1290,1294..1296,1384..1395,1399..1401)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(823..834,847..849,886..888,892..894,985..987,
                     1033..1044,1054..1056,1183..1188,1192..1194,1222..1227)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(835..837,1054..1056,1060..1062,1168..1173,
                     1177..1179,1183..1185,1234..1236,1276..1290,1294..1296)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1222..1290
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1612..1740
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2479..2772
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2485..2487,2494..2496,2704..2706,2710..2715)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 ttccggcatc cggaggcagc aaaggaagcc gaggggcggc catcttgggt ccgtgaggct
       61 cggaggtgct gggggcggcg gtgttggtgg ccactgggcg gaggctgagg cggaaagcga
      121 gccggaggga gaagaacagc cgggtgtagg cgccgcctcc gcagccccat ccatggtcgg
      181 cgcccgcagc ccgcggggac ctgtcttgca ctccacctcc tccacatcct cctcttcttc
      241 aggggccgcc ggcggcgctg tgtggaggct ccggcgctga aatccgcggc gcgacgggcg
      301 ggggcggagg aggaggcgag ggggtccggg cccgcggggc gcccggaggc gcggggacgc
      361 cagtgggccg acccgcagcc cgccgccgcc ggcccggcct cgccaccgcc gcccgcgggg
      421 ctcctcggcg cggccgccgg ggccggggga gcatgagccc cgcgacccgc cgggggacgg
      481 cccgggcccg acccgggatc tagacggccg tgggggaggg gagccgccct gccgcggcgc
      541 cgctccggaa ccgccgggcc ctcgacgccg cttctccggc ccccgggacc gcgctgtttt
      601 gtttcaccct cgcgttgtgc agaagtgaag tgaagtaaaa tgtccactag gaccccgctg
      661 ccgacggtga atgaacggga cactgagaac cacacgtcac atggagacgg gcggcaagaa
      721 gttacctctc gcactgggcg ctccggagca cgatgtagaa actctgtagc ttcctgtgca
      781 gatgaacagc ctcacattgg aaactacaga ctgttgaaaa caatcggcaa ggggaatttt
      841 gcaaaagtga aattggcaag acacatcctt acaggcagag aggtcgcaat aaaaataatt
      901 gacaaaactc agttgaatcc aacaagtcta caaaagctct tcagagaagt aagaataatg
      961 aagattttaa atcatccaaa catagtgaag ttattcgaag tcattgaaac tgacaaaaca
     1021 ctctacctaa tcatggagta tgccagtgga ggtgaagtgt ttgactattt ggttgcacat
     1081 ggaagaatga aggaaaaaga agcaagagct aaatttagac agatagtgtc tgcagtccag
     1141 tactgccacc aaaagcggat cgtccacaga gacctcaagg ctgaaaatct attgttagat
     1201 gctgatatga acattaaaat agctgacttt ggttttagca atgaatttac tgttggcagt
     1261 aaactggata cgttttgtgg cagtcctccg tatgcagccc cagagctctt ccagggcaag
     1321 aaatacgatg ggccggaagt ggacgtgtgg agcctcggcg tcattcttta cactctagtc
     1381 agcgggtcac tcccctttga tggacagaac ctaaaggaac tgagagagag agtattaaga
     1441 gggaaataca gaatcccttt ctacatgtcc acagactgtg aaaaccttct caaacgtttc
     1501 ctggtgctaa atccaataaa acgaggcact ctagagcaaa tcatgaagga caggtggatc
     1561 aatgcagggc atgaggaaga tgaactaaaa ccatttgttg aaccagaact ggacatctca
     1621 gaccagaaaa gaatagatat tatggtggga atgggatatt cacaagacga aattcaagaa
     1681 tctcttagta agatgaaata tgatgaaatc acagctacct acttgttgtt ggggagaaaa
     1741 tcttcagagg ttaggccaag cagtgacctc aacaacagta ctggccagtc tcctcaccac
     1801 aaagtccaga gaagtgtttc ttcaagccag aagcagaggc ggtacagcga ccatgctgga
     1861 ccagctattc cttcagttgt ggcgtatccg aaaaggagtc agaccagcac tgcagacggc
     1921 gacctcagag aagatggagt tccctcccgg aaaccaggcg gcagtgctgc tggaggaaag
     1981 ggagttgctc cagccagtcc catgcttggg agtgcaagta atcccaacaa ggcagatatt
     2041 cctgaacgca agaagagctc caccgtccct ggtagtaata cagcatctgg tggaatgacg
     2101 cggcggaata cttatgtttg cagtgaaaga actacagctg atagacattc agtaattcat
     2161 aatggcaaag aaaacagcac tattcctgac cagagggctc cagttgcttc aacacacagt
     2221 attagcagcg ccaccacccc agatcgaacc cgcttcccaa gaggcactgc cagtcgtagc
     2281 actttccacg gccagccccg ggagcggcgc actgccacgt ataacggccc gcctgcttca
     2341 cccagcctgt cccatgaagc cacaccattg tcgcagactc gaagccgagg ctccactaat
     2401 ctttttagta aattaacttc caaactcacg aggagtcgca acgtatctgc tgagcaaaag
     2461 gaggaaaaca aagaagcaaa acctcgttcc ctgcgcttta cctggagcat gaaaaccact
     2521 agttccatgg atcccaatga catgatgcgg gaaatccgca aagtgctgga cgccaataac
     2581 tgtgactacg agcagagaga gcgcttctta ctcttctgtg tccacggcga cgggcacgcg
     2641 gagagcctcg tgcagtggga gatggaagtg tgcaagctgc caagactgtc tctgaacggg
     2701 gtccggttta agcggatatc agggacgtcc atagctttca aaaatatcgc ttccaaaatt
     2761 gccaatgagc taaagctgta acccagtaat tatggtgtaa attaagtagc agtttaaagt
     2821 gttttcctga acactgatgg aaatgtatag aataatattt aggcaataac gtctgcatct
     2881 tctaaatcat gatattaaaa tataaggacg agagcacgcc tgggagcgaa agctggcctt
     2941 ttttctacga atgcactaca ttaaagacgt gtgacacgtg tgccctctgt cttatttcca
     3001 ttgccctgaa agtcagcgtg tgacatccat ctccacgtgc ctcctgtctg tgcgggtgtg
     3061 agagtggacg gtgtgtgtgt gaagtagtgc tacggaagca tctccttaca ctggcaacca
     3121 gagttgttac gagtacctct gtgggagatt atttggtgct aaaacattaa aattgccaag
     3181 gaggaaaata ctgaattact actaagaatt aactttaaga ctagttggta attaatgcag
     3241 gtttacagtt catgcctgtg gttttgtgtt tgttgtttcg tgtttttttt tagtgcaaaa
     3301 ggtttaaatt tatagttgtg aacattgctt gtgtgtgttt ttctaagtag attcacaaga
     3361 taattaaaaa ttcacttttt ctgagtaaaa
//
LOCUS       XM_032620568            3130 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus microtubule affinity regulating kinase 3
            (MARK3), transcript variant X9, mRNA.
ACCESSION   XM_032620568
VERSION     XM_032620568.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3130
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3130
                     /gene="MARK3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 24 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747877"
     CDS             590..2521
                     /gene="MARK3"
                     /codon_start=1
                     /product="MAP/microtubule affinity-regulating kinase 3
                     isoform X9"
                     /protein_id="XP_032476459.1"
                     /db_xref="GeneID:116747877"
                     /translation="MSTRTPLPTVNERDTENHTSHGDGRQEVTSRTGRSGARCRNSVA
                     SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR
                     EVRIMKILNHPNIVKLFEVIETDKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFR
                     QIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLDTFCGSPPY
                     AAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM
                     STDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDI
                     MVGMGYSQDEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSD
                     LNNSTGQSPHHKVQRSVSSSQKQRRYSDHAGPAIPSVVAYPKRSQTSTADGDLREDGV
                     PSRKPGGSAAGGKGVAPASPMLGSASNPNKADIPERKKSSTVPGSNTASGGMTRRNTY
                     VCSERTTADRHSVIHNGKENSRNVSAEQKEENKEAKPRSLRFTWSMKTTSSMDPNDMM
                     REIRKVLDANNCDYEQRERFLLFCVHGDGHAESLVQWEMEVCKLPRLSLNGVRFKRIS
                     GTSIAFKNIASKIANELKL"
     misc_feature    752..1510
                     /gene="MARK3"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     MAP/microtubule affinity-regulating kinases; Region:
                     STKc_MARK; cd14072"
                     /db_xref="CDD:270974"
     misc_feature    order(773..787,797..799,836..838,842..844,935..937,
                     983..994,1004..1006,1010..1015,1019..1021,1118..1123,
                     1127..1129,1133..1138,1142..1144,1172..1177,1184..1186,
                     1223..1240,1244..1246,1334..1345,1349..1351)
                     /gene="MARK3"
                     /note="active site"
                     /db_xref="CDD:270974"
     misc_feature    order(773..784,797..799,836..838,842..844,935..937,
                     983..994,1004..1006,1133..1138,1142..1144,1172..1177)
                     /gene="MARK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    order(785..787,1004..1006,1010..1012,1118..1123,
                     1127..1129,1133..1135,1184..1186,1226..1240,1244..1246)
                     /gene="MARK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270974"
     misc_feature    1172..1240
                     /gene="MARK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270974"
     misc_feature    1562..1690
                     /gene="MARK3"
                     /note="UBA domain found in MAP/microtubule
                     affinity-regulating kinase MARK3, MARK4, and similar
                     proteins; Region: UBA_MARK3_4; cd14407"
                     /db_xref="CDD:270590"
     misc_feature    2219..2512
                     /gene="MARK3"
                     /note="C-terminal, kinase associated domain 1 (KA1), a
                     phospholipid binding domain, of microtubule
                     affinity-regulating kinases 1-3; Region: MARK1-3_C;
                     cd12196"
                     /db_xref="CDD:213381"
     misc_feature    order(2225..2227,2234..2236,2444..2446,2450..2455)
                     /gene="MARK3"
                     /note="putative phospholipid binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:213381"
ORIGIN      
        1 ccgtgaggct cggaggtgct gggggcggcg gtgttggtgg ccactgggcg gaggctgagg
       61 cggaaagcga gccggaggga gaagaacagc cgggtgtagg cgccgcctcc gcagccccat
      121 ccatggtcgg cgcccgcagc ccgcggggac ctgtcttgca ctccacctcc tccacatcct
      181 cctcttcttc aggggccgcc ggcggcgctg tgtggaggct ccggcgctga aatccgcggc
      241 gcgacgggcg ggggcggagg aggaggcgag ggggtccggg cccgcggggc gcccggaggc
      301 gcggggacgc cagtgggccg acccgcagcc cgccgccgcc ggcccggcct cgccaccgcc
      361 gcccgcgggg ctcctcggcg cggccgccgg ggccggggga gcatgagccc cgcgacccgc
      421 cgggggacgg cccgggcccg acccgggatc tagacggccg tgggggaggg gagccgccct
      481 gccgcggcgc cgctccggaa ccgccgggcc ctcgacgccg cttctccggc ccccgggacc
      541 gcgctgtttt gtttcaccct cgcgttgtgc agaagtgaag tgaagtaaaa tgtccactag
      601 gaccccgctg ccgacggtga atgaacggga cactgagaac cacacgtcac atggagacgg
      661 gcggcaagaa gttacctctc gcactgggcg ctccggagca cgatgtagaa actctgtagc
      721 ttcctgtgca gatgaacagc ctcacattgg aaactacaga ctgttgaaaa caatcggcaa
      781 ggggaatttt gcaaaagtga aattggcaag acacatcctt acaggcagag aggtcgcaat
      841 aaaaataatt gacaaaactc agttgaatcc aacaagtcta caaaagctct tcagagaagt
      901 aagaataatg aagattttaa atcatccaaa catagtgaag ttattcgaag tcattgaaac
      961 tgacaaaaca ctctacctaa tcatggagta tgccagtgga ggtgaagtgt ttgactattt
     1021 ggttgcacat ggaagaatga aggaaaaaga agcaagagct aaatttagac agatagtgtc
     1081 tgcagtccag tactgccacc aaaagcggat cgtccacaga gacctcaagg ctgaaaatct
     1141 attgttagat gctgatatga acattaaaat agctgacttt ggttttagca atgaatttac
     1201 tgttggcagt aaactggata cgttttgtgg cagtcctccg tatgcagccc cagagctctt
     1261 ccagggcaag aaatacgatg ggccggaagt ggacgtgtgg agcctcggcg tcattcttta
     1321 cactctagtc agcgggtcac tcccctttga tggacagaac ctaaaggaac tgagagagag
     1381 agtattaaga gggaaataca gaatcccttt ctacatgtcc acagactgtg aaaaccttct
     1441 caaacgtttc ctggtgctaa atccaataaa acgaggcact ctagagcaaa tcatgaagga
     1501 caggtggatc aatgcagggc atgaggaaga tgaactaaaa ccatttgttg aaccagaact
     1561 ggacatctca gaccagaaaa gaatagatat tatggtggga atgggatatt cacaagacga
     1621 aattcaagaa tctcttagta agatgaaata tgatgaaatc acagctacct acttgttgtt
     1681 ggggagaaaa tcttcagagc tggatgctag tgattccagt tctagcagca atctttcact
     1741 tgctaaggtt aggccaagca gtgacctcaa caacagtact ggccagtctc ctcaccacaa
     1801 agtccagaga agtgtttctt caagccagaa gcagaggcgg tacagcgacc atgctggacc
     1861 agctattcct tcagttgtgg cgtatccgaa aaggagtcag accagcactg cagacggcga
     1921 cctcagagaa gatggagttc cctcccggaa accaggcggc agtgctgctg gaggaaaggg
     1981 agttgctcca gccagtccca tgcttgggag tgcaagtaat cccaacaagg cagatattcc
     2041 tgaacgcaag aagagctcca ccgtccctgg tagtaataca gcatctggtg gaatgacgcg
     2101 gcggaatact tatgtttgca gtgaaagaac tacagctgat agacattcag taattcataa
     2161 tggcaaagaa aacagtcgca acgtatctgc tgagcaaaag gaggaaaaca aagaagcaaa
     2221 acctcgttcc ctgcgcttta cctggagcat gaaaaccact agttccatgg atcccaatga
     2281 catgatgcgg gaaatccgca aagtgctgga cgccaataac tgtgactacg agcagagaga
     2341 gcgcttctta ctcttctgtg tccacggcga cgggcacgcg gagagcctcg tgcagtggga
     2401 gatggaagtg tgcaagctgc caagactgtc tctgaacggg gtccggttta agcggatatc
     2461 agggacgtcc atagctttca aaaatatcgc ttccaaaatt gccaatgagc taaagctgta
     2521 acccagtaat tatggtgtaa attaagtagc agtttaaagt gttttcctga acactgatgg
     2581 aaatgtatag aataatattt aggcaataac gtctgcatct tctaaatcat gatattaaaa
     2641 tataaggacg agagcacgcc tgggagcgaa agctggcctt ttttctacga atgcactaca
     2701 ttaaagacgt gtgacacgtg tgccctctgt cttatttcca ttgccctgaa agtcagcgtg
     2761 tgacatccat ctccacgtgc ctcctgtctg tgcgggtgtg agagtggacg gtgtgtgtgt
     2821 gaagtagtgc tacggaagca tctccttaca ctggcaacca gagttgttac gagtacctct
     2881 gtgggagatt atttggtgct aaaacattaa aattgccaag gaggaaaata ctgaattact
     2941 actaagaatt aactttaaga ctagttggta attaatgcag gtttacagtt catgcctgtg
     3001 gttttgtgtt tgttgtttcg tgtttttttt tagtgcaaaa ggtttaaatt tatagttgtg
     3061 aacattgctt gtgtgtgttt ttctaagtag attcacaaga taattaaaaa ttcacttttt
     3121 ctgagtaaaa
//
LOCUS       XM_032620578            9112 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus unc-79 homolog, NALCN channel complex
            subunit (UNC79), transcript variant X1, mRNA.
ACCESSION   XM_032620578
VERSION     XM_032620578.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9112
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..9112
                     /gene="UNC79"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 21%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747915"
     CDS             86..8140
                     /gene="UNC79"
                     /codon_start=1
                     /product="protein unc-79 homolog isoform X1"
                     /protein_id="XP_032476469.1"
                     /db_xref="GeneID:116747915"
                     /translation="MSTKAEQFASKIRYLQEYHNRVLHNIYPVPSGTDIANTLKYFSQ
                     TLLSILSRTGKKENQDASNLTVPMTMCLFPVPFPLTPSLRPQVSSINPTVTRSLLYSV
                     LRDAPSERGLQSRDAHLSDYPSLDYQGLYVTLVTLLDLVPLLQHGQHDLGQSIFYTTT
                     CLLPFLNDDILSTLPYTMISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRREGVPAH
                     VNLSASSMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQM
                     LFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHTECHNAINKPAVKMCIDPSLSVALGD
                     KPPPLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGC
                     CGRHGNRPVRYCKRCHSNHHSNELGAASETHLYQTSPPPINTRECGAEELVCAVEAVI
                     SLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDHADFDNKDDDKHDQRLLSQFGIWFL
                     VSLCTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCD
                     VRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECI
                     MPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSSVQ
                     EQALLWLHVLSELDIMVPLQLLISMFSDGVNSVKELANQRKSRVSELAGNLAARRVSV
                     ASDPGRRVQHNMLSPFHSPFQSPFRSPMRSPFRSPFKNFGHQGGRTIDFDCEDDEMNL
                     NCFILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHTCQKEEKAI
                     ECNLCQSSILCYQLACELLERLAPKEESRLVEPTDSLEDSLLSSRPEFIIGPEGEDEE
                     NPATKHEENPGNRTKPMEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDIL
                     FNMLNCLKILCLHGECLYSARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPL
                     LLHALSLPHGADIFWTIINGNFNSKDWKMRFEAVEKVAVICRFLDIHSVTKNHLLKYS
                     LAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILS
                     KLLLLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLS
                     DAALWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKICQQSPENDNTI
                     KDLLPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQ
                     QEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHY
                     FQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDISKVLLHLIHITVNTLNAQYH
                     SCKPHAAAGPLYSDNSNISRYSEKEKEEDSVFDESDIHDTPTGPCNKESQTFFARLKR
                     IGGSKMVKYQPVEMNVQRSEIELAEYRETGALQDNILHCVREESIQKKKLRSLKQKSL
                     DIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAYFTQRQHDHGRSRQNSATRSDNAE
                     IPENPALEGFQEARRPVIPEVRLNCMETFEVKVDSPIKPAPKEDLDLIDLSSDSTSGP
                     EKHSTLSTSDSDSLVFEPLPPLRIVESDEEETMDQGDDGTSGKDAASSPSIRNRPSVL
                     SLSTTPLVQVSVEDCSKDFSSKDSGNNQSADARDSPLIALEDPTDSEELSKPEELQGC
                     SCGSPLTLKQRRDLLQKTLALPEMSLDDNPEPSTEEGKPGGLMPSSGAKTVLLKVPED
                     SENPTESEKPDARAESDAEQNPERKAEEEGAEESEFKIQIVPRQRKQRKIAVSAIQRE
                     YLDISFNILDKLGDQKDPDPATKGLSTLEMPRECSSAPTLEAGVPETSSHSSISTQYR
                     QMKRGSLGALTMSQLMKRQLEHQSSAPHNISNWDTEQIQPGKRQCNVPTCLNPDLEGQ
                     PLRMRGATKSSLLSAPSIVSMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDEETLGL
                     AIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMLPGNAAGVAKQFLR
                     CIFHQLAPNGIFPQLFQSTIKDGTFLRTLATSLMDFNELSSVAVLSQLLEGLNNKKNL
                     PAGGAMIRCLENIATFMEALPMDSPSSLWAIISNQFQTFFAKLPCVLPLKCSLDSSLR
                     IMICLLKIPSTNATRSLLEPFSKLLSFVIQNAIFTLAYLVEVCGLCYRAFTKERDKFY
                     LSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGT
                     AAMECVRQYINDVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQIAAMEI
                     SRGNHRDNKAVIRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHNAVCPN
                     ASFPCLPIPLDAGSHIADHLIVILIGFPEQSKTSVLHMCSLFHAFIFAQLWTVYCEQS
                     AVATNVQSQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLMEALQE
                     CNSTIFVKLIPMWLPMIQSNVKHLSAGLQLRLQAIQNNVNHHSLRTLPGSTQSSASLA
                     ALRKWLQCTQFKMAQVEIQSSEAASQFYPL"
     misc_feature    425..2020
                     /gene="UNC79"
                     /note="Cation-channel complex subunit UNC-79; Region:
                     UNC-79; pfam14776"
                     /db_xref="CDD:434201"
ORIGIN      
        1 tcttttcctc gcaacatcgc tggcggagcg agggagctca cacgacacag attttggggc
       61 aaagcctttg catctggaca gcaccatgtc caccaaagcg gagcagtttg cttccaagat
      121 ccggtactta caggaatatc ataaccgagt tctccacaac atttatcctg taccttcggg
      181 aacagatatc gcaaacaccc tgaaatactt ttctcagacc ttgttaagca ttttgtcccg
      241 cacagggaag aaggaaaacc aagatgcctc caatttgaca gtgcccatga ccatgtgtct
      301 ttttcctgtg ccattcccac tcaccccatc tctaagaccg caggtcagtt ccatcaaccc
      361 tactgttact cgctccctcc tttacagcgt cctgcgagat gctccctctg aacgtggcct
      421 gcaaagtcgt gatgctcact tgtcagacta cccttctttg gactatcaag gcctctacgt
      481 gactttggtg actctcctgg atctagttcc tttactacag catggccaac atgatcttgg
      541 acagtcaata ttttatacaa ctacgtgttt gctccccttt ctcaatgatg atattctgag
      601 tactttgccc tacacgatga tatcaacttt agctaccttt cctccgtttc tgcacaagga
      661 cattattgaa tatctcagca catcttttct accaatggct atattgggct cctcaaggag
      721 agaaggtgtt cctgcccacg ttaatctctc cgcatcatcc atgctaatga ttgcaatgca
      781 gtacacatcc aatccagtgt atcattgtca attattggaa tgcctcatga aatataaaca
      841 agaagtctgg aaagatcttt tgtatgtgat agcctatggg ccttcacagg tgaaacctcc
      901 agctgtgcaa atgctcttcc attactggcc caatttaaaa cctcctgggg caataagcga
      961 gtacaggggc ttacagtaca cagcttggaa ccccatccac tgccagcaca ctgaatgcca
     1021 caacgcaatt aacaaaccag ctgtgaagat gtgtatagac ccctccctgt ctgtagcttt
     1081 gggtgataaa ccacccccat tgtatctctg tgaagaatgc agccagagga ttgcagggga
     1141 ccacagtgaa tggttgattg atgttcttct gccgcaagct gaaatatctg ctatatgtca
     1201 gaagaagaac tgcagttccc acgttagaag agctgttgtc acctgctttt cagcagggtg
     1261 ttgtggtcgt catggaaaca ggcctgttcg gtactgcaaa agatgccact caaatcatca
     1321 cagtaacgaa ctgggagctg cctcggagac ccacctctat cagacctccc ctccacccat
     1381 caacactcga gaatgtggtg ccgaggaact tgtctgcgcc gtggaggcgg tgattagctt
     1441 gttgaaagaa gccgagttcc atgctgagca gcgggaacat gagctcaatc gccggcggca
     1501 gctgggcctc tcctcctccc accattccct ggatcacgct gactttgaca acaaagatga
     1561 tgataaacac gaccagcggc tactcagtca atttgggata tggttcttag tgagcctctg
     1621 cacgcccagt gagaacaccc ctacggaaag cttggccagg ctggtggcca tggtgtttca
     1681 gtggtttcac tccacagcat atatgatgga tgatgaagtt ggaagtttag tggaaaagct
     1741 gaagcctcag tttgtcacca agtggttgaa gacagtatgt gatgttcgct ttgatgtcat
     1801 ggtcatgtgc cttcttccca aaccaatgga atttgccagg gttggtggat actgggataa
     1861 gtcctgtagc acagtgactc agttgaagga aggtctcaac cgaatcctct gcctgattcc
     1921 ctacaatgtg atcagtcagt ccgtgtggga gtgtatcatg ccggaatggc tagaagccat
     1981 cagaacagaa gtcccagata atcagttaaa agaattcagg gaagtattaa gcaaaatgtt
     2041 tgacattgag ctttgtcctc tacctttttc aatggaagag atgtttggct ttattagttg
     2101 tcggttcaca ggataccctt cctctgtgca ggaacaagct ttactgtggc ttcatgtatt
     2161 atcagagtta gacatcatgg ttccacttca actattaatc agtatgtttt ctgatggagt
     2221 taattctgtt aaagaactgg caaatcaaag aaaatcaaga gtcagtgaac tggcagggaa
     2281 ccttgcagct cgaagggtga gtgttgcctc tgatcctggt cggcgagttc agcacaatat
     2341 gctgagtccg tttcatagtc cttttcagag tccatttcgg agtcctatgc gtagcccatt
     2401 tcgtagtcct ttcaagaatt ttggacatca aggaggaagg actattgact ttgattgtga
     2461 agatgatgaa atgaatctaa attgtttcat cctcatgttt gatcttctcc tgaagcagat
     2521 ggagttacaa gatgatggga tcacgatggg cttagagcac agcttatcaa aggacattat
     2581 ttccattata aacaatgtct tccaagcccc ctgggggggc tcccacacct gccagaagga
     2641 agaaaaagca attgagtgta acttatgtca gtctagtatt ctctgctatc agcttgcttg
     2701 tgagctcctg gagagactgg ctcccaaaga agaaagccgg ctggtggagc ccacagacag
     2761 ccttgaggat agcctccttt cttccagacc agagtttatt ataggcccgg aaggtgagga
     2821 tgaggagaac ccagcaacta agcatgagga gaacccaggc aatcgcacca agcccatgga
     2881 acatgctgca ataaagaatg atactgaaag gaagttttgc taccagcagc ttccagtaac
     2941 gctgagacta atatacacca ttttccagga aatggccaag tttgaagagc cagacattct
     3001 ttttaatatg ctcaattgcc tgaagatcct ctgtctacac ggagagtgtt tatacagtgc
     3061 tagaaaagat catcctcaat ttttagccta tattcaggat catatgttga ttgcaagcct
     3121 gtggagagtc gtcaaatctg aattctccca gctatcttca ttggcagttc ctctccttct
     3181 tcacgctttg tcacttcctc atggtgctga catcttttgg acaatcatta atggcaattt
     3241 caacagcaaa gactggaaga tgaggtttga agcagtggaa aaagtggctg taatttgtag
     3301 atttctggat attcattcag tgaccaaaaa ccacctgctg aagtactccc tggcacacgc
     3361 cttctgctgc tttctgacgg ctgtggagga cgtcaaccca gctgtggcta cgagggctgg
     3421 tctcctgctt gacaccataa agaggccagc cttgcagggt ctgtgtcttt gtcttgactt
     3481 ccagtttgat actgtggtta aagatcgacc cacaatattg agcaagcttt tactcttgca
     3541 ttttcttaag caagatattc ctgctttgag ttgggagttc tttgtcaaca gatttgaaac
     3601 gctttctttg gaagctcagc tacatttgga ttgtaacaaa gaatttcctt ttcctacaac
     3661 tatcactgct gtgaggacca atgtcgctaa tctcagtgat gcagcattgt ggaagatcaa
     3721 gagggctcgt tttgcaagga accgccagaa gagtgtgcgt tccctcagag acagcgtgaa
     3781 agggcccgcg gagtccaaga gggcgctctc cctccctgag accctaacct ccaaaatctg
     3841 ccaacagtcc cctgagaatg acaacaccat caaggacctg ctccctgaag atgctgggat
     3901 cgaccaccag acagtgcacc agctaattac agtgctcatg aagttcatgg ccaaggatga
     3961 gagcagcgcc gagtcagaca tcagcagcgc caaggccttc aacacggtca agcggcacct
     4021 gtatgtctta cttggctacg accagcagga aggttgcttc atgattgcac ctcaaaaaat
     4081 gcgcctgtcc acttgcttta atgcgtttat tgcaggaatt gcccaagtta tggactataa
     4141 cattaatttg ggaaaacacc ttctcccctt ggtggttcag gtgctcaaat actgctcttg
     4201 tcctcaacta cggcattatt tccaacagcc acctcgttgt tctctctggt ccctaaaacc
     4261 tcacatccgg cagatgtggt tgaaggcctt gcttgtcatc ctttacaagt atccataccg
     4321 agactgtgat atcagcaagg tcctgctgca tctgattcac ataacagtca atacactcaa
     4381 tgcacaatat cacagctgca agccccacgc cgcggcagga cctttgtaca gtgacaacag
     4441 taacataagc agatacagcg aaaaagaaaa agaagaagat agtgtttttg atgaatctga
     4501 tattcatgat acacctactg gaccctgcaa taaagagtct caaacttttt ttgcaagatt
     4561 gaaaaggata ggcggcagca aaatggtgaa atatcagccg gttgagatga atgttcagag
     4621 aagtgaaata gaactggctg aatatagaga aacgggtgca ttacaagaca acattctaca
     4681 ctgtgtgaga gaagaaagca ttcagaaaaa aaagctgcgc tctttaaaac aaaaatctct
     4741 tgatataggg aatgcagact ccctcttgtt tacgctagat gagcaccgta ggaagtcctg
     4801 catagaccgg tgtgacatag acaagcctcc agcccaagct gcatatttca cgcaaagaca
     4861 gcatgaccat ggacggtcta gacagaactc tgctacgagg tctgacaatg ccgaaatccc
     4921 cgagaacccg gctctggaag gttttcaaga agctcggagg cctgtaatac cagaagttag
     4981 gttaaactgc atggagacat ttgaggtgaa agtggattcc ccaataaagc ctgctcccaa
     5041 agaggattta gatctgatag acttgtcctc agattcaaca tctgggcctg aaaagcactc
     5101 tacgctctca acatcggaca gcgactccct tgtgtttgaa cctcttcccc ctctccgaat
     5161 agtagagagt gatgaagagg agaccatgga ccaaggggac gatggtacct ctggtaagga
     5221 tgctgcttcc tctccctcca tccgcaaccg cccctctgtc ctcagcctca gtacgacgcc
     5281 cctcgtgcag gtaagcgtgg aagactgttc caaagacttt tcttctaagg actcaggaaa
     5341 taaccagtcg gcggatgcca gggactcccc tctcatagct ctggaagacc ccacggactc
     5401 cgaagaatta tcaaagcctg aggagctgca agggtgttcc tgtggcagcc cgctcacgct
     5461 taagcaaaga cgagacctcc ttcagaagac gcttgctctc cctgagatgt cactggacga
     5521 taaccctgag cccagcactg aggaagggaa gcccggtggg ctgatgccaa gttcaggggc
     5581 aaaaaccgtc ctcctcaaag tccctgaaga ttcggagaat ccaacggaaa gtgagaagcc
     5641 agacgccaga gctgaatcag acgcagaaca gaaccctgaa aggaaggcag aagaggaggg
     5701 agctgaggaa tctgaattta agattcagat tgtccccagg cagaggaaac agaggaagat
     5761 tgcggtcagt gccatccaga gagagtacct tgacatttcc ttcaacattc tagacaaatt
     5821 gggagatcag aaagatccag atccggctac taaaggactt tcaactttgg aaatgccacg
     5881 agaatgctca tctgccccca cattagaagc aggtgtgcca gaaacaagca gccattcttc
     5941 aatatcaact cagtataggc agatgaaaag gggatccctg ggagctctga caatgagcca
     6001 gttaatgaag cgacagctgg agcatcagtc tagcgccccc cataacatca gcaactggga
     6061 cactgaacag atacagcctg ggaaacgcca gtgtaatgtg ccaacgtgcc taaaccctga
     6121 cctggaggga cagccactga gaatgagagg tgccacgaaa tccagcctgc tgtcagcacc
     6181 cagcattgtg agtatgtttg taccagcacc cgaagaattc acagacgagc agccgacggt
     6241 gatgacagac aaatgccatg actgtggggc cattcttgaa gagtatgatg aggaaaccct
     6301 tgggctggcc attgtggttc tctccacatt cattcactta agcccagact tggcagcccc
     6361 gttgttgctg gatatcatgc agtctgtggg aagattggca tccagcacaa ctttttctaa
     6421 tcaagcagaa agcatgatgc tacccggcaa tgcagcgggg gtggccaagc agttcctgcg
     6481 ctgtatcttc catcagctgg ctcccaatgg catcttcccg cagctgttcc agagcactat
     6541 caaagatggt acttttttac ggaccttggc cacgtctctg atggacttca atgaactgag
     6601 ctctgttgct gtcctcagtc agctcttgga gggtctaaat aacaaaaaga atttaccagc
     6661 agggggtgct atgatacgct gtttggaaaa cattgctacc ttcatggaag ctttgcccat
     6721 ggattctcct agtagcctct gggcaatcat cagcaaccag tttcagactt tttttgccaa
     6781 gctgccttgt gttttgcctc tgaagtgttc tttagattcc agtttgagaa ttatgatttg
     6841 cctcttgaag ataccctcta ccaatgccac aaggagtttg ttggaaccat tttcaaaact
     6901 gctcagcttt gtaattcaga atgccatctt cactttggcc tacctggtgg aggtgtgtgg
     6961 cttatgttac cgagctttca ctaaggagag ggataaattc tatttgtctc gtagtgttgt
     7021 tctagaactc ctgcaggccc tgaagctcaa atctccttta ccggatacaa acctccttct
     7081 gcttgtccag tttatttgtg cagatgctgg aaccaaacta gctgagtcaa cgatcctgag
     7141 caagcagatg atcgcctctg tacctggatg cgggacggcg gccatggagt gtgtgcggca
     7201 gtacatcaac gacgtgctgg acttcatggc agacatgcac acgctgacca aactgaagag
     7261 ccacatgaag acatgttccc agcctctgca tgaagatacc tttggtggcc atctcaaagt
     7321 tgggctggct cagattgcag ccatggaaat ctcacggggc aaccacagag ataacaaagc
     7381 tgtgattcgc tatctgcctt ggctctatca tcccccttct gcaatgcaac aaggaccaaa
     7441 agaattcatt gagtgtgtct ctcacatccg gctgctgtcc tggctgcttc tgggttccct
     7501 cactcataat gcagtgtgtc caaatgcctc ctttccctgc ctgccaatac ctctggatgc
     7561 aggttcccat attgcagatc atcttattgt tatcctgatt ggatttccag agcaatcaaa
     7621 gacctccgtg ttgcacatgt gttctctttt ccatgcattt atctttgctc agctctggac
     7681 cgtatattgt gaacaaagtg ctgtagctac aaatgttcaa agtcagaatg aattcagctt
     7741 cacagcgata ctgacagcac tagaattttg gagtagggtg acacccagca tccttcagct
     7801 gatggcccat aacaaagtga tggtagaaat ggtgtgtctc catgtgatta gtttaatgga
     7861 ggcattgcaa gaatgcaatt caacaatttt tgtcaagctg atacctatgt ggttaccaat
     7921 gattcagtca aatgtcaagc acttatctgc gggactccag cttcgcctcc aggccattca
     7981 gaacaacgtg aaccaccaca gcctcaggac gctgccgggc tccacccaga gcagtgccag
     8041 cctggcggcc ctgcgcaagt ggctgcagtg cacccagttc aaaatggccc aggtggagat
     8101 ccagtcctca gaagcagcct ctcaatttta tcctctatga gcggactcct cggctctcag
     8161 tgtcaacact ctggtttagc aataatgggt ttcaaaacaa acaattcgat ccaagcaggt
     8221 tggggaacat attggtactg tacattctct ttctagttta gtaaaagaca tgcaaaggcc
     8281 ggagagggcc aaaatgaagc tttcttgcta cacatttctg atgactcctt gggctatccg
     8341 attaagtgtt tccttacatt attttttaaa aaccaaatca tttttcttta actaacttct
     8401 atttttttta agaaaaaaaa atagactggt gggtactcac agaaaagttg tataagtccc
     8461 cctgttgcta tttttgatga tagagaataa atagggtttt tgaaaccttt gtagtgtttt
     8521 ttcttaaaat ccactcttgg caatgcaata aaaaaacccc gtcaccataa gccagtgaca
     8581 cttgactgaa gctttttgtc attatcctgg gaaaagtggc agcttgcaag gaccattaca
     8641 aagtgcactt agaaattagg tggttaaact gtgccaactg ttttctttgt tttataatat
     8701 cattttccag gactgtccag taagttttat tatttttaaa actagttttt caactcatta
     8761 gtcctaggct gtactttctt gtaagcttta tgacaaccac tttagttttg tgaataataa
     8821 attttattct tttgttaata cttgtataca attcaattta aaactgtaga ttgcatactg
     8881 gaccagacga ttccccacgc tggcacagaa cactgcacct ggagctatgt ttcataaaat
     8941 ggaattttaa tagtgtaaga gcaccaagat ttatcagcac ttatatttaa catttgactg
     9001 tgcattcaca aatgatattt ctcttctcta tccctgtaat gcactgacta aaagaagact
     9061 taatatacat ttaagctgta tattgacatg ctattaaatg cattttttat ta
//
LOCUS       XM_032620585            8706 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus unc-79 homolog, NALCN channel complex
            subunit (UNC79), transcript variant X2, mRNA.
ACCESSION   XM_032620585
VERSION     XM_032620585.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8706
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8706
                     /gene="UNC79"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 Proteins, and 20%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116747915"
     CDS             361..7734
                     /gene="UNC79"
                     /codon_start=1
                     /product="protein unc-79 homolog isoform X2"
                     /protein_id="XP_032476476.1"
                     /db_xref="GeneID:116747915"
                     /translation="MISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRREGVPAHVNL
                     SASSMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFH
                     YWPNLKPPGAISEYRGLQYTAWNPIHCQHTECHNAINKPAVKMCIDPSLSVALGDKPP
                     PLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGR
                     HGNRPVRYCKRCHSNHHSNELGAASETHLYQTSPPPINTRECGAEELVCAVEAVISLL
                     KEAEFHAEQREHELNRRRQLGLSSSHHSLDHADFDNKDDDKHDQRLLSQFGIWFLVSL
                     CTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRF
                     DVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECIMPE
                     WLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSSVQEQA
                     LLWLHVLSELDIMVPLQLLISMFSDGVNSVKELANQRKSRVSELAGNLAARRVSVASD
                     PGRRVQHNMLSPFHSPFQSPFRSPMRSPFRSPFKNFGHQGGRTIDFDCEDDEMNLNCF
                     ILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHTCQKEEKAIECN
                     LCQSSILCYQLACELLERLAPKEESRLVEPTDSLEDSLLSSRPEFIIGPEGEDEENPA
                     TKHEENPGNRTKPMEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDILFNM
                     LNCLKILCLHGECLYSARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPLLLH
                     ALSLPHGADIFWTIINGNFNSKDWKMRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAH
                     AFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILSKLL
                     LLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLSDAA
                     LWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKICQQSPENDNTIKDL
                     LPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQQEG
                     CFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQ
                     PPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDISKVLLHLIHITVNTLNAQYHSCK
                     PHAAAGPLYSDNSNISRYSEKEKGEIELAEYRETGALQDNILHCVREESIQKKKLRSL
                     KQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAYFTQRQHDHGRSRQNSATR
                     SDNAEIPENPALEGFQEARRPVIPEVRLNCMETFEVKVDSPIKPAPKEDLDLIDLSSD
                     STSGPEKHSTLSTSDSDSLVFEPLPPLRIVESDEEETMDQGDDGTSGKDAASSPSIRN
                     RPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNNQSADARDSPLIALEDPTDSEELSKPE
                     ELQGCSCGSPLTLKQRRDLLQKTLALPEMSLDDNPEPSTEEGKPGGLMPSSGAKTVLL
                     KVPEDSENPTESEKPDARAESDAEQNPERKAEEEGAEESEFKIQIVPRQRKQRKIAVS
                     AIQREYLDISFNILDKLGDQKDPDPATKGLSTLEMPRECSSAPTLEAGVPETSSHSSI
                     STQYRQMKRGSLGALTMSQLMKRQLEHQSSAPHNISNWDTEQIQPGKRQCNVPTCLNP
                     DLEGQPLRMRGATKSSLLSAPSIVSMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDE
                     ETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMLPGNAAGVA
                     KQFLRCIFHQLAPNGIFPQLFQSTIKDGTFLRTLATSLMDFNELSSVAVLSQLLEGLN
                     NKKNLPAGGAMIRCLENIATFMEALPMDSPSSLWAIISNQFQTFFAKLPCVLPLKCSL
                     DSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAIFTLAYLVEVCGLCYRAFTKE
                     RDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASV
                     PGCGTAAMECVRQYINDVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQI
                     AAMEISRGNHRDNKAVIRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHN
                     AVCPNASFPCLPIPLDAGSHIADHLIVILIGFPEQSKTSVLHMCSLFHAFIFAQLWTV
                     YCEQSAVATNVQSQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLM
                     EALQECNSTIFVKLIPMWLPMIQSNVKHLSAGLQLRLQAIQNNVNHHSLRTLPGSTQS
                     SASLAALRKWLQCTQFKMAQVEIQSSEAASQFYPL"
     misc_feature    367..1764
                     /gene="UNC79"
                     /note="Cation-channel complex subunit UNC-79; Region:
                     UNC-79; pfam14776"
                     /db_xref="CDD:434201"
ORIGIN      
        1 catgtctgtc ttgcttccaa gatccggtac ttacaggaat atcataaccg agttctccac
       61 aacatttatc ctgtaccttc gggaacagat atcgcaaaca ccctgaaata cttttctcag
      121 accttgttaa gcgtcctgcg agatgctccc tctgaacgtg gcctgcaaag tcgtgatgct
      181 cacttgtcag actacccttc tttggactat caaggcctct acgtgacttt ggtgactctc
      241 ctggatctag ttcctttact acagcatggc caacatgatc ttggacagtc aatattttat
      301 acaactacgt gtttgctccc ctttctcaat gatgatattc tgagtacttt gccctacacg
      361 atgatatcaa ctttagctac ctttcctccg tttctgcaca aggacattat tgaatatctc
      421 agcacatctt ttctaccaat ggctatattg ggctcctcaa ggagagaagg tgttcctgcc
      481 cacgttaatc tctccgcatc atccatgcta atgattgcaa tgcagtacac atccaatcca
      541 gtgtatcatt gtcaattatt ggaatgcctc atgaaatata aacaagaagt ctggaaagat
      601 cttttgtatg tgatagccta tgggccttca caggtgaaac ctccagctgt gcaaatgctc
      661 ttccattact ggcccaattt aaaacctcct ggggcaataa gcgagtacag gggcttacag
      721 tacacagctt ggaaccccat ccactgccag cacactgaat gccacaacgc aattaacaaa
      781 ccagctgtga agatgtgtat agacccctcc ctgtctgtag ctttgggtga taaaccaccc
      841 ccattgtatc tctgtgaaga atgcagccag aggattgcag gggaccacag tgaatggttg
      901 attgatgttc ttctgccgca agctgaaata tctgctatat gtcagaagaa gaactgcagt
      961 tcccacgtta gaagagctgt tgtcacctgc ttttcagcag ggtgttgtgg tcgtcatgga
     1021 aacaggcctg ttcggtactg caaaagatgc cactcaaatc atcacagtaa cgaactggga
     1081 gctgcctcgg agacccacct ctatcagacc tcccctccac ccatcaacac tcgagaatgt
     1141 ggtgccgagg aacttgtctg cgccgtggag gcggtgatta gcttgttgaa agaagccgag
     1201 ttccatgctg agcagcggga acatgagctc aatcgccggc ggcagctggg cctctcctcc
     1261 tcccaccatt ccctggatca cgctgacttt gacaacaaag atgatgataa acacgaccag
     1321 cggctactca gtcaatttgg gatatggttc ttagtgagcc tctgcacgcc cagtgagaac
     1381 acccctacgg aaagcttggc caggctggtg gccatggtgt ttcagtggtt tcactccaca
     1441 gcatatatga tggatgatga agttggaagt ttagtggaaa agctgaagcc tcagtttgtc
     1501 accaagtggt tgaagacagt atgtgatgtt cgctttgatg tcatggtcat gtgccttctt
     1561 cccaaaccaa tggaatttgc cagggttggt ggatactggg ataagtcctg tagcacagtg
     1621 actcagttga aggaaggtct caaccgaatc ctctgcctga ttccctacaa tgtgatcagt
     1681 cagtccgtgt gggagtgtat catgccggaa tggctagaag ccatcagaac agaagtccca
     1741 gataatcagt taaaagaatt cagggaagta ttaagcaaaa tgtttgacat tgagctttgt
     1801 cctctacctt tttcaatgga agagatgttt ggctttatta gttgtcggtt cacaggatac
     1861 ccttcctctg tgcaggaaca agctttactg tggcttcatg tattatcaga gttagacatc
     1921 atggttccac ttcaactatt aatcagtatg ttttctgatg gagttaattc tgttaaagaa
     1981 ctggcaaatc aaagaaaatc aagagtcagt gaactggcag ggaaccttgc agctcgaagg
     2041 gtgagtgttg cctctgatcc tggtcggcga gttcagcaca atatgctgag tccgtttcat
     2101 agtccttttc agagtccatt tcggagtcct atgcgtagcc catttcgtag tcctttcaag
     2161 aattttggac atcaaggagg aaggactatt gactttgatt gtgaagatga tgaaatgaat
     2221 ctaaattgtt tcatcctcat gtttgatctt ctcctgaagc agatggagtt acaagatgat
     2281 gggatcacga tgggcttaga gcacagctta tcaaaggaca ttatttccat tataaacaat
     2341 gtcttccaag ccccctgggg gggctcccac acctgccaga aggaagaaaa agcaattgag
     2401 tgtaacttat gtcagtctag tattctctgc tatcagcttg cttgtgagct cctggagaga
     2461 ctggctccca aagaagaaag ccggctggtg gagcccacag acagccttga ggatagcctc
     2521 ctttcttcca gaccagagtt tattataggc ccggaaggtg aggatgagga gaacccagca
     2581 actaagcatg aggagaaccc aggcaatcgc accaagccca tggaacatgc tgcaataaag
     2641 aatgatactg aaaggaagtt ttgctaccag cagcttccag taacgctgag actaatatac
     2701 accattttcc aggaaatggc caagtttgaa gagccagaca ttctttttaa tatgctcaat
     2761 tgcctgaaga tcctctgtct acacggagag tgtttataca gtgctagaaa agatcatcct
     2821 caatttttag cctatattca ggatcatatg ttgattgcaa gcctgtggag agtcgtcaaa
     2881 tctgaattct cccagctatc ttcattggca gttcctctcc ttcttcacgc tttgtcactt
     2941 cctcatggtg ctgacatctt ttggacaatc attaatggca atttcaacag caaagactgg
     3001 aagatgaggt ttgaagcagt ggaaaaagtg gctgtaattt gtagatttct ggatattcat
     3061 tcagtgacca aaaaccacct gctgaagtac tccctggcac acgccttctg ctgctttctg
     3121 acggctgtgg aggacgtcaa cccagctgtg gctacgaggg ctggtctcct gcttgacacc
     3181 ataaagaggc cagccttgca gggtctgtgt ctttgtcttg acttccagtt tgatactgtg
     3241 gttaaagatc gacccacaat attgagcaag cttttactct tgcattttct taagcaagat
     3301 attcctgctt tgagttggga gttctttgtc aacagatttg aaacgctttc tttggaagct
     3361 cagctacatt tggattgtaa caaagaattt ccttttccta caactatcac tgctgtgagg
     3421 accaatgtcg ctaatctcag tgatgcagca ttgtggaaga tcaagagggc tcgttttgca
     3481 aggaaccgcc agaagagtgt gcgttccctc agagacagcg tgaaagggcc cgcggagtcc
     3541 aagagggcgc tctccctccc tgagacccta acctccaaaa tctgccaaca gtcccctgag
     3601 aatgacaaca ccatcaagga cctgctccct gaagatgctg ggatcgacca ccagacagtg
     3661 caccagctaa ttacagtgct catgaagttc atggccaagg atgagagcag cgccgagtca
     3721 gacatcagca gcgccaaggc cttcaacacg gtcaagcggc acctgtatgt cttacttggc
     3781 tacgaccagc aggaaggttg cttcatgatt gcacctcaaa aaatgcgcct gtccacttgc
     3841 tttaatgcgt ttattgcagg aattgcccaa gttatggact ataacattaa tttgggaaaa
     3901 caccttctcc ccttggtggt tcaggtgctc aaatactgct cttgtcctca actacggcat
     3961 tatttccaac agccacctcg ttgttctctc tggtccctaa aacctcacat ccggcagatg
     4021 tggttgaagg ccttgcttgt catcctttac aagtatccat accgagactg tgatatcagc
     4081 aaggtcctgc tgcatctgat tcacataaca gtcaatacac tcaatgcaca atatcacagc
     4141 tgcaagcccc acgccgcggc aggacctttg tacagtgaca acagtaacat aagcagatac
     4201 agcgaaaaag aaaaaggtga aatagaactg gctgaatata gagaaacggg tgcattacaa
     4261 gacaacattc tacactgtgt gagagaagaa agcattcaga aaaaaaagct gcgctcttta
     4321 aaacaaaaat ctcttgatat agggaatgca gactccctct tgtttacgct agatgagcac
     4381 cgtaggaagt cctgcataga ccggtgtgac atagacaagc ctccagccca agctgcatat
     4441 ttcacgcaaa gacagcatga ccatggacgg tctagacaga actctgctac gaggtctgac
     4501 aatgccgaaa tccccgagaa cccggctctg gaaggttttc aagaagctcg gaggcctgta
     4561 ataccagaag ttaggttaaa ctgcatggag acatttgagg tgaaagtgga ttccccaata
     4621 aagcctgctc ccaaagagga tttagatctg atagacttgt cctcagattc aacatctggg
     4681 cctgaaaagc actctacgct ctcaacatcg gacagcgact cccttgtgtt tgaacctctt
     4741 ccccctctcc gaatagtaga gagtgatgaa gaggagacca tggaccaagg ggacgatggt
     4801 acctctggta aggatgctgc ttcctctccc tccatccgca accgcccctc tgtcctcagc
     4861 ctcagtacga cgcccctcgt gcaggtaagc gtggaagact gttccaaaga cttttcttct
     4921 aaggactcag gaaataacca gtcggcggat gccagggact cccctctcat agctctggaa
     4981 gaccccacgg actccgaaga attatcaaag cctgaggagc tgcaagggtg ttcctgtggc
     5041 agcccgctca cgcttaagca aagacgagac ctccttcaga agacgcttgc tctccctgag
     5101 atgtcactgg acgataaccc tgagcccagc actgaggaag ggaagcccgg tgggctgatg
     5161 ccaagttcag gggcaaaaac cgtcctcctc aaagtccctg aagattcgga gaatccaacg
     5221 gaaagtgaga agccagacgc cagagctgaa tcagacgcag aacagaaccc tgaaaggaag
     5281 gcagaagagg agggagctga ggaatctgaa tttaagattc agattgtccc caggcagagg
     5341 aaacagagga agattgcggt cagtgccatc cagagagagt accttgacat ttccttcaac
     5401 attctagaca aattgggaga tcagaaagat ccagatccgg ctactaaagg actttcaact
     5461 ttggaaatgc cacgagaatg ctcatctgcc cccacattag aagcaggtgt gccagaaaca
     5521 agcagccatt cttcaatatc aactcagtat aggcagatga aaaggggatc cctgggagct
     5581 ctgacaatga gccagttaat gaagcgacag ctggagcatc agtctagcgc cccccataac
     5641 atcagcaact gggacactga acagatacag cctgggaaac gccagtgtaa tgtgccaacg
     5701 tgcctaaacc ctgacctgga gggacagcca ctgagaatga gaggtgccac gaaatccagc
     5761 ctgctgtcag cacccagcat tgtgagtatg tttgtaccag cacccgaaga attcacagac
     5821 gagcagccga cggtgatgac agacaaatgc catgactgtg gggccattct tgaagagtat
     5881 gatgaggaaa cccttgggct ggccattgtg gttctctcca cattcattca cttaagccca
     5941 gacttggcag ccccgttgtt gctggatatc atgcagtctg tgggaagatt ggcatccagc
     6001 acaacttttt ctaatcaagc agaaagcatg atgctacccg gcaatgcagc gggggtggcc
     6061 aagcagttcc tgcgctgtat cttccatcag ctggctccca atggcatctt cccgcagctg
     6121 ttccagagca ctatcaaaga tggtactttt ttacggacct tggccacgtc tctgatggac
     6181 ttcaatgaac tgagctctgt tgctgtcctc agtcagctct tggagggtct aaataacaaa
     6241 aagaatttac cagcaggggg tgctatgata cgctgtttgg aaaacattgc taccttcatg
     6301 gaagctttgc ccatggattc tcctagtagc ctctgggcaa tcatcagcaa ccagtttcag
     6361 actttttttg ccaagctgcc ttgtgttttg cctctgaagt gttctttaga ttccagtttg
     6421 agaattatga tttgcctctt gaagataccc tctaccaatg ccacaaggag tttgttggaa
     6481 ccattttcaa aactgctcag ctttgtaatt cagaatgcca tcttcacttt ggcctacctg
     6541 gtggaggtgt gtggcttatg ttaccgagct ttcactaagg agagggataa attctatttg
     6601 tctcgtagtg ttgttctaga actcctgcag gccctgaagc tcaaatctcc tttaccggat
     6661 acaaacctcc ttctgcttgt ccagtttatt tgtgcagatg ctggaaccaa actagctgag
     6721 tcaacgatcc tgagcaagca gatgatcgcc tctgtacctg gatgcgggac ggcggccatg
     6781 gagtgtgtgc ggcagtacat caacgacgtg ctggacttca tggcagacat gcacacgctg
     6841 accaaactga agagccacat gaagacatgt tcccagcctc tgcatgaaga tacctttggt
     6901 ggccatctca aagttgggct ggctcagatt gcagccatgg aaatctcacg gggcaaccac
     6961 agagataaca aagctgtgat tcgctatctg ccttggctct atcatccccc ttctgcaatg
     7021 caacaaggac caaaagaatt cattgagtgt gtctctcaca tccggctgct gtcctggctg
     7081 cttctgggtt ccctcactca taatgcagtg tgtccaaatg cctcctttcc ctgcctgcca
     7141 atacctctgg atgcaggttc ccatattgca gatcatctta ttgttatcct gattggattt
     7201 ccagagcaat caaagacctc cgtgttgcac atgtgttctc ttttccatgc atttatcttt
     7261 gctcagctct ggaccgtata ttgtgaacaa agtgctgtag ctacaaatgt tcaaagtcag
     7321 aatgaattca gcttcacagc gatactgaca gcactagaat tttggagtag ggtgacaccc
     7381 agcatccttc agctgatggc ccataacaaa gtgatggtag aaatggtgtg tctccatgtg
     7441 attagtttaa tggaggcatt gcaagaatgc aattcaacaa tttttgtcaa gctgatacct
     7501 atgtggttac caatgattca gtcaaatgtc aagcacttat ctgcgggact ccagcttcgc
     7561 ctccaggcca ttcagaacaa cgtgaaccac cacagcctca ggacgctgcc gggctccacc
     7621 cagagcagtg ccagcctggc ggccctgcgc aagtggctgc agtgcaccca gttcaaaatg
     7681 gcccaggtgg agatccagtc ctcagaagca gcctctcaat tttatcctct atgagcggac
     7741 tcctcggctc tcagtgtcaa cactctggtt tagcaataat gggtttcaaa acaaacaatt
     7801 cgatccaagc aggttgggga acatattggt actgtacatt ctctttctag tttagtaaaa
     7861 gacatgcaaa ggccggagag ggccaaaatg aagctttctt gctacacatt tctgatgact
     7921 ccttgggcta tccgattaag tgtttcctta cattattttt taaaaaccaa atcatttttc
     7981 tttaactaac ttctattttt tttaagaaaa aaaaatagac tggtgggtac tcacagaaaa
     8041 gttgtataag tccccctgtt gctatttttg atgatagaga ataaataggg tttttgaaac
     8101 ctttgtagtg ttttttctta aaatccactc ttggcaatgc aataaaaaaa ccccgtcacc
     8161 ataagccagt gacacttgac tgaagctttt tgtcattatc ctgggaaaag tggcagcttg
     8221 caaggaccat tacaaagtgc acttagaaat taggtggtta aactgtgcca actgttttct
     8281 ttgttttata atatcatttt ccaggactgt ccagtaagtt ttattatttt taaaactagt
     8341 ttttcaactc attagtccta ggctgtactt tcttgtaagc tttatgacaa ccactttagt
     8401 tttgtgaata ataaatttta ttcttttgtt aatacttgta tacaattcaa tttaaaactg
     8461 tagattgcat actggaccag acgattcccc acgctggcac agaacactgc acctggagct
     8521 atgtttcata aaatggaatt ttaatagtgt aagagcacca agatttatca gcacttatat
     8581 ttaacatttg actgtgcatt cacaaatgat atttctcttc tctatccctg taatgcactg
     8641 actaaaagaa gacttaatat acatttaagc tgtatattga catgctatta aatgcatttt
     8701 ttatta
//
LOCUS       XM_032620599            8217 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BTB domain containing 7 (BTBD7),
            transcript variant X1, mRNA.
ACCESSION   XM_032620599
VERSION     XM_032620599.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8217
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8217
                     /gene="BTBD7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 15 long SRA reads, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747924"
     CDS             331..3702
                     /gene="BTBD7"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 7 isoform X1"
                     /protein_id="XP_032476490.1"
                     /db_xref="GeneID:116747924"
                     /translation="MGANASNCPHSCSPRVGGSSQAQQTFIGTSSYSQQGYGCESKLY
                     SLDHGHEKPQDKKKRTSGLATLKKKFIKRRKSNRSADHAKQMRELLSGWDVRDVNALV
                     EEYEGTSALKELSLQASLARPEARTLQKDMADLYEYKYCTDVDLIFQETCFPVHRAIL
                     AARCPFFKTLLSSSPEYGAEIIMDISTAGIDMPMFSALLHYLYTGEFGMEDSRFQNVD
                     ILVQLSEEFGTPNSLDVDMRGLFDYMCYYDVVLSFSSDSELVEAFGGNQNCLDEELKA
                     HKAIISARSPFFRNLLQRRIRTGEEITDRTLRTPTRIILDESIIPKKYAKVILHCMYT
                     DVVDLSVLHCSPSVGSLSEVQALVAGKPNMTRAEEAMELYHIALFLEFNMLAQGCEDI
                     IAESISLDTLIAILKWSSHPYGSKWVHRQALHFLCEEFSQVMTSDVFYELSKDHLLTA
                     IQSDYLQASEQDILKYLIKWGEHQLMKRIADREPNLLSGTAHSVNKRGVKRRDLDIEE
                     LREILSSLLPFVRIEHILPINSEVLSDAMKRGLISTPPSDMLPTTEGGKSNAWLRQKN
                     AGIYVRPRLFSPYVEEAKSVLDEMMVEQTDLVRLRMVRMSNVPDTLYMVNNAVPQCCH
                     MISHQQISSNQSSPPSVVANEIPVPRLLIMKDMVRRLQELRHTEQVQRAYALNCGEGA
                     TVSYEIQIRVLREFGLADAAAELLQNPHKFFPDERFGDESPLLTMRQSGRCRVSSNPT
                     AETVFTDPDSFVAFHPPLPPPPPPYHPPATPVHHHLKAGWRQRPPSQHPSRSFSYPCN
                     HSLFHSRAAPKAVPPPVCLPGVQAAGPDCPGTTGLGRQTGAAAASAAVVSERQVCTQP
                     VLNDLMPDIAMGVSTLSLKDRRLPELAVDTELSQSVSEVGPGPPQHLSCIPQRHTHTS
                     RKKHTLEQKPDTRENQQEYPDFYDFSNAACRPSTPAPGRRSPSPSQGGYFGPDLYSHN
                     KVSPSGLKSAYLPGQTSPKKQEEARREYPLSPDGHLHRQKNEPVHLDVVEQPPQRSDF
                     PLAAPENAGNGPAHVRGRTAVETDLTFGLTPNRPSHSACSSEAPEERSGRRLADSESL
                     GHGAQRNTDLEREDSISRGRRSPSKPDFLYKKSAL"
     misc_feature    748..1023
                     /gene="BTBD7"
                     /note="first BTB (Broad-Complex, Tramtrack and Bric a
                     brac)/POZ (poxvirus and zinc finger) domain found in
                     BTB/POZ domain-containing protein 7 (BTBD7); Region:
                     BTB1_POZ_BTBD7; cd18283"
                     /db_xref="CDD:349592"
     misc_feature    1063..1506
                     /gene="BTBD7"
                     /note="second BTB (Broad-Complex, Tramtrack and Bric a
                     brac)/POZ (poxvirus and zinc finger) domain found in
                     BTB/POZ domain-containing protein 7 (BTBD7); Region:
                     BTB2_POZ_BTBD7; cd18284"
                     /db_xref="CDD:349593"
     misc_feature    1519..1812
                     /gene="BTBD7"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     BTB/POZ domain-containing protein 7 (BTBD7); Region:
                     BACK_BTBD7; cd18489"
                     /db_xref="CDD:350564"
ORIGIN      
        1 ctgctcgctc caggcgtcaa aatggcggcg agagaaacct ggagaagccc cggagcctga
       61 gccactgaca ggagctgaga cgggaggtgg cggcggcgac ggcaggagga ggatggccgg
      121 gggcgctggc gccggtgcgg acggcggtgc aggcggcggc ggcgggggcg acggccgcgg
      181 tcccagcggc ggcagcagca gcagcggcgg gaggagcctc cgggaaatgg atgaaaagag
      241 gctcctggat ccagggttga aagttcgtaa aggcctctgg gattatactc tgaagaacca
      301 gcagatggaa tgcctgagtg actgaagaaa atgggtgcta atgcatctaa ctgtcctcat
      361 tcatgttccc cgagggtagg gggaagttct caagcccagc agacttttat agggacatca
      421 tcctattctc agcaaggcta tggttgtgaa tcaaaattat atagccttga ccatggccat
      481 gagaaaccac aagacaaaaa aaagagaacc tctggccttg ccaccctcaa gaagaagttt
      541 atcaagcgtc gaaaatctaa taggtctgct gatcacgcca agcagatgcg agaactcctc
      601 tctgggtggg atgttcgaga tgtcaatgca ttagtggagg aatatgaggg aacttcagcc
      661 ttaaaggagc tttctctaca agccagtttg gctagaccag aagcccggac attgcagaaa
      721 gatatggccg atctttatga gtacaagtat tgtaccgatg tagacttaat atttcaagaa
      781 acttgttttc ctgttcatcg tgccattttg gcagcaagat gtccattttt taaaacacta
      841 ctttcttcct cacccgagta tggggcagag atcataatgg acatcagtac agctggtata
      901 gatatgccca tgttttctgc gttgttacac tacctttata caggagagtt tggaatggag
      961 gactcaaggt ttcaaaatgt tgatatcctc gttcagctta gtgaagaatt tggaacacca
     1021 aattcccttg atgtagatat gcgtggactc tttgattaca tgtgttatta tgatgtcgtc
     1081 cttagttttt cttcagactc tgaactggtt gaagcttttg gtggaaatca gaactgttta
     1141 gatgaagagc tcaaagctca taaggctatt atttcagcac ggtccccatt ttttcgaaat
     1201 ttattacaaa ggaggatacg gactggtgaa gaaatcacag accgaacttt aaggactccc
     1261 acaagaatta tattagatga gtccattata ccaaaaaaat atgcgaaagt tatattacac
     1321 tgtatgtata ctgacgtggt ggacctctcc gttttgcact gtagcccctc tgtggggagt
     1381 ctcagtgaag ttcaggctct cgtcgcaggg aagccaaaca tgactagggc agaagaagcc
     1441 atggaacttt accacatagc actgttcttg gaatttaaca tgcttgcaca aggctgtgag
     1501 gatatcattg ctgaaagcat ctcattagat accttaattg ccatcctcaa gtggagctct
     1561 catccatatg gctctaaatg ggtacaccga caagctttac atttcctctg tgaggaattt
     1621 tcccaggtca tgacttcgga tgttttttat gaactcagca aagaccatct gcttacggct
     1681 atccagtctg actacctaca ggcaagtgaa caagatatcc ttaaatatct gattaaatgg
     1741 ggtgagcatc agttaatgaa gagaatagcg gacagagagc caaacttact gagtggcact
     1801 gctcatagtg tgaacaagag aggtgtcaaa agacgagacc tggacatcga agagcttaga
     1861 gagatccttt cttctctctt accttttgtg cgaattgaac atattttacc tataaacagt
     1921 gaagtcctaa gtgatgcaat gaaaagaggc ttgattagta ctcctccatc agatatgctt
     1981 cctacaacag aaggtggaaa gtcaaatgcc tggttacggc aaaaaaatgc tggaatatat
     2041 gttcgtcctc gactgttctc tccctatgta gaagaagcaa agtcagtgct agacgagatg
     2101 atggtggaac aaacagatct tgtgcgtttg agaatggtta gaatgtccaa tgtgccagac
     2161 acactttaca tggtcaataa tgccgtgcca cagtgctgtc acatgatcag ccaccagcag
     2221 atcagcagta accagtcaag ccctccttcg gttgtagcaa atgaaatccc agttcctcgt
     2281 ctcctcatta tgaaagacat ggtcagacgt ctgcaggagc tacgacacac tgagcaggtg
     2341 cagagagcct acgcacttaa ctgtggggaa ggcgccaccg tgagctatga aattcagatt
     2401 cgagtactga gagagttcgg gctcgcagat gctgctgcag agctcttgca gaatcctcac
     2461 aagttctttc ctgatgaacg ttttggagat gaaagtccac tcttgacaat gaggcagtct
     2521 gggagatgtc gagttagcag taaccccact gcagaaaccg tgtttacaga tccggactct
     2581 tttgtggcct tccatccacc cttgccacct ccaccaccgc cgtaccaccc cccagctacc
     2641 ccagtccatc accacctcaa agcgggctgg agacaaagac ctcccagcca acacccttca
     2701 cgttcgttct cttatccctg taatcattca ctgtttcact ccagagcagc tcctaaagca
     2761 gtgccccctc cagtctgttt gccgggtgtt caagcagcag gacctgactg tcccggcacc
     2821 acagggctgg ggagacagac gggagccgcc gccgcctcag cagcagtagt gtctgagaga
     2881 caagtgtgta cacaacctgt gctaaatgat ctaatgccag atatcgccat gggagtgtcc
     2941 acactgtcac tcaaggacag gaggcttccc gaacttgctg tagacacaga attaagccag
     3001 tcagtttctg aagtaggacc agggcctccc cagcatctat cgtgtattcc acagaggcat
     3061 acacacacgt ctcgaaagaa acacacacta gagcaaaaac cagacactcg agaaaatcag
     3121 caggaatatc cagatttcta tgacttctcg aacgctgctt gtagaccatc tactccggct
     3181 cccggcagac gcagcccttc cccttcgcag ggtggatatt ttggtcccga tttgtatagc
     3241 cacaataagg tatcaccaag cggcttaaag tcagcctacc tacctggcca gacctctcct
     3301 aaaaagcagg aagaagctag gagagaatat ccactttccc ctgatgggca tctgcacaga
     3361 caaaagaatg agccggtaca cctcgatgtt gttgagcagc ctccccagcg gtcggacttt
     3421 cctttggcag ccccagaaaa tgccggcaac ggtccagccc atgtcagggg gcggacagca
     3481 gtggaaactg acttgacttt tgggctgact cctaacagac cttcacattc tgcatgtagc
     3541 tctgaagctc cagaagagag atctggtaga agactggcag acagcgagtc cttgggccat
     3601 ggagctcagc gaaatacaga tttggaaagg gaagattcaa tcagcagagg aaggaggtca
     3661 ccaagcaagc cagacttcct ctacaaaaag tctgcccttt gagagcaacc tccaagtcgt
     3721 ctgtgcctga gatgtgaaac atcccatttt atgatgtaac ccaacaactt agagtattga
     3781 tgccagctga taactcagtt tcacggtatt ttattctggt ttttgtatat acacgtctat
     3841 tagacatggc atgctaagag ggttattctg aatgctgcgt ctgtctattt tgtgttggaa
     3901 caactgtgtg ggggaagcat ttttaagagc aagcaagctg gcactttttt tttttctctt
     3961 tacaaatgat ggaatttttt tgcacttgta cttttatctg tattgttttt atatcagtat
     4021 gttaaacttt attgccacat ttaaaggact gtattttcat acttttttgc attttacctt
     4081 tcatctagca atttccacgt gcattggatt gcacactaag atgtattttc ttatgaaata
     4141 gttctgtgtt tattttttaa ttatagaaat tccaaagaac agcacatcaa aatgctcctc
     4201 tcttttcagt cattgtttta gttcagaaat cttgccgctc agtcttcata aatctaacgt
     4261 cgtacttttt aaatgagtct tgggagctgg tcttcattcc tccagcagga atccagtcag
     4321 gatcctgaag tttcctggtt cagtaaagaa caagaaggag aaaagccttt tgtgtccaga
     4381 ctcaagctat tgctttattc acagtgcaga tgctgttaga atcactgcag attctggtag
     4441 tgtggattag agtttcacta gatgaggttc taaagcgatc ggctttcctg gaatcctaaa
     4501 gaagtggaat tagcgaagta acttaagcct gccctacggg attgccggtt ctgagctgcg
     4561 actctccaga tgagtccggg gagtgactgc ttgctgcctt cagttgtctt gctctctgtg
     4621 ggaaaaaaac aaaagggctt cagccttacg gatgtcattt ggtgtttgta agcatatatt
     4681 ttcttttaag tgtttttcaa agtgtgtctg aattttggtg tcctttaaag aagttgttgt
     4741 ataatgcata atgctttgtc accaaaaaag aaaaagaaac cttttttttt tccttcggtg
     4801 aaatactacg tgtcctactt gaactccact ggggacgctg gtttgggatt ttactgaacc
     4861 actgagcaca tgggatcttt taagatcctc tcccttagaa gggcaatgtg tgagctaagg
     4921 actgtttttt tcttactctc caatgtaaat acattagtat ttgagttttt aaatcacttc
     4981 gacattattt gagcattcac tttctatttt tacacataca cacacagccg tggcacttag
     5041 aagaaaagag actttctgaa cactccctcc cgtgaaggat gtttgggagc ctcttctctg
     5101 tgtatgtata tatatataaa actctgaatc actcacactc actctaaaac tatgcagggc
     5161 tagggagcct ttacaagcta ccatataaat gaatgacatg cacttttaag taaataggtt
     5221 tctattgggt gtcaagaact ctgatttctc ccgaaactgt agtttctctt ataatctttt
     5281 cctactttta ccctgtggat atacactcag gaataatctg acatttaaaa aaatcctaac
     5341 agtaggtagt cttaaagatg ggaacacatc cgtttgtctg tctacaccgg caaaccgcta
     5401 ccactcgctc tgctgcctgg ctagttagct gctgcccgta cgtccctcga tgtcggccaa
     5461 gctgcacacc gagccccaga tctcccagag tcaacgccag gctgctgtga ggtcagctac
     5521 acgtcgtcgc ctttgaggct cctttttttt aaagatgaaa aacgttagga ctctgttctc
     5581 atttttagta ggtttttgac tttatgatag atgacggtgt cttttgaagc caatctcagt
     5641 ctgtctctcc tcagaaacac aaagtgttaa ttccatcata ttccttaatg tgtatttata
     5701 tacatgtgtt gacatgaatt attttgatac agttttaaat ttctattctg aattcagact
     5761 gtgctgtgct ggtactgcaa agaagagtga gtagacatag ttggtggggg aaatctttct
     5821 catctccaac ctgttttttt taaaaaatgt tagacaagag ctattggtgc cacacatgca
     5881 tttttctgaa aatttattaa atattctttc acgtccctaa aatataatta taaaagaagt
     5941 ggccactgtt catagtttta tttaatttat gaagtttgct tttaataatt tagtagcata
     6001 cctggctaaa ctctatgtat agagaggaac gtgctgtgga tcgtggactg ctgtgacttc
     6061 cagaagggaa acagatgtgg gtttagtgtt agggtaggtg ttagtggact tttaatgtat
     6121 cttgtgaagt atggtcagta gggtaggttg aatagctgtg tgcctctggc ttttgaaccc
     6181 atctattcag ttttctttaa tgcttactaa gcattaaaat ctttcagtgc tgtacgaaga
     6241 taaatgtgaa gtctgagtaa gattgctctc agaaataaac atgtataata taaaatttag
     6301 gccacgggac ctagcatttt actcggtgta gaaatttcat gagaaccaaa tctcaacata
     6361 ccagatctcc tctcgaggcc atggacaatc aggccattag acaatcgcca cctttggtgt
     6421 ccgccgagtc gaggttagcg aataccagtt agatcctgga gcagaaggag aagatctgca
     6481 tttcttcaag acgctgttgg tctgtttctt atatttctgt tttagttttg tgattttgat
     6541 tagtaatttc agttcagagt cacctgtgac tcctaaggga aaaagatagc agcatgaaag
     6601 gcaaaaatta ttcctgaaaa aatcgttgtt tgaatttacc atgtgctatt catactcttt
     6661 ttcacacgcc cctgtagctt tttctaggca tgtccctaga cctcatctct cctgacattt
     6721 tggtaaccag gtagacttta aatgagttct ttttatttga gtcttttggg gttttttttg
     6781 gttgaactct atgaaacttt gcttaattct tgtttatgct tccttaaaaa actgttcttt
     6841 attgagtttt ctttggattt gttgttcaag ctctagtagc agtggaccat acttgtccct
     6901 ttggatttag gtgatgatgg aggggaaaca gcgtatgcag catcggcagc ggggtgcaaa
     6961 gatgaccccc acgtgctggc agcagcggga cgcaaagatg acccccgcgt gttggtctct
     7021 agaggtgaaa gatgaacacc tctcagtaac tactcatcag aatatgaatt ttcatgttga
     7081 aatccgcctt ttaggggaaa atgtgtttcc tgaaacactt gtaagatact gcttttgcaa
     7141 ttctaaggca tttatgtttt tatcttagga ctgaactcaa agggaaatgt ttgccttttt
     7201 tttttttttt aattatttgg ttgaccttca acttactgtt gaacgttact attaaagcag
     7261 cagtgatggg tgctattccc cgttctgcag tggtttactt tgtctactaa ggagtttact
     7321 ttaaaacctc attacagata accttactaa aagaattacc gtcacacact aaagtgtatt
     7381 gtattatttt ccattaacac tgttgtacga acagtgtctt atgaaatgtt aagttgtctt
     7441 tttgtcctgt cgattgcaat aggtgttatg taattgttgt attggcaagt tttttgattt
     7501 ttcttttcct atagagaagc ctcagaccat gagtcaatct tccatattct gaatattata
     7561 atgctgtggc cctttctata gaaagattac ttgcaagtgt tgtgtcttga aaataacttc
     7621 ttgtgtctgt gtgtttacgt gggttctgtc taagagctga aacgagctct ggaagcttca
     7681 tcgtgtacct gcacgtgact gtgtatctgg gttccatggg cacgtgggac ggaatcctgc
     7741 tcttaggtgg ggtggctgaa cgataaagat tcctgaactc cacttgctgt ttgtgtacca
     7801 cgtctgtgtg tcagagaggt ggtatcttct acaacactgc atttcttgtg gttgtgctgt
     7861 tactggtata aagtcaagtg ccttcaatgc taaaggctca gaaatttttc ttaaactgat
     7921 ttcacgtcct atgcaagtgt tttctacaac ctgcgtaacc agtactttgt aaaacttgtt
     7981 tacgcttcaa atgtacatag tgttttttaa agaaatatat agtattttta tttaggtacc
     8041 tccaaacttg aattcgtctg tgtgaagcat tgtaaaatga tacatttctc ttttgagcac
     8101 cattacagtt gtacaaaggt tttcactggt tctatttttc tactgttact gacaagcatg
     8161 taacactgac tttatcctac atatagttgg cgtttcaaat aaatggcttg gatagaa
//
LOCUS       XM_032620608            8069 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BTB domain containing 7 (BTBD7),
            transcript variant X2, mRNA.
ACCESSION   XM_032620608
VERSION     XM_032620608.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8069
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8069
                     /gene="BTBD7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747924"
     CDS             183..3554
                     /gene="BTBD7"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 7 isoform X1"
                     /protein_id="XP_032476499.1"
                     /db_xref="GeneID:116747924"
                     /translation="MGANASNCPHSCSPRVGGSSQAQQTFIGTSSYSQQGYGCESKLY
                     SLDHGHEKPQDKKKRTSGLATLKKKFIKRRKSNRSADHAKQMRELLSGWDVRDVNALV
                     EEYEGTSALKELSLQASLARPEARTLQKDMADLYEYKYCTDVDLIFQETCFPVHRAIL
                     AARCPFFKTLLSSSPEYGAEIIMDISTAGIDMPMFSALLHYLYTGEFGMEDSRFQNVD
                     ILVQLSEEFGTPNSLDVDMRGLFDYMCYYDVVLSFSSDSELVEAFGGNQNCLDEELKA
                     HKAIISARSPFFRNLLQRRIRTGEEITDRTLRTPTRIILDESIIPKKYAKVILHCMYT
                     DVVDLSVLHCSPSVGSLSEVQALVAGKPNMTRAEEAMELYHIALFLEFNMLAQGCEDI
                     IAESISLDTLIAILKWSSHPYGSKWVHRQALHFLCEEFSQVMTSDVFYELSKDHLLTA
                     IQSDYLQASEQDILKYLIKWGEHQLMKRIADREPNLLSGTAHSVNKRGVKRRDLDIEE
                     LREILSSLLPFVRIEHILPINSEVLSDAMKRGLISTPPSDMLPTTEGGKSNAWLRQKN
                     AGIYVRPRLFSPYVEEAKSVLDEMMVEQTDLVRLRMVRMSNVPDTLYMVNNAVPQCCH
                     MISHQQISSNQSSPPSVVANEIPVPRLLIMKDMVRRLQELRHTEQVQRAYALNCGEGA
                     TVSYEIQIRVLREFGLADAAAELLQNPHKFFPDERFGDESPLLTMRQSGRCRVSSNPT
                     AETVFTDPDSFVAFHPPLPPPPPPYHPPATPVHHHLKAGWRQRPPSQHPSRSFSYPCN
                     HSLFHSRAAPKAVPPPVCLPGVQAAGPDCPGTTGLGRQTGAAAASAAVVSERQVCTQP
                     VLNDLMPDIAMGVSTLSLKDRRLPELAVDTELSQSVSEVGPGPPQHLSCIPQRHTHTS
                     RKKHTLEQKPDTRENQQEYPDFYDFSNAACRPSTPAPGRRSPSPSQGGYFGPDLYSHN
                     KVSPSGLKSAYLPGQTSPKKQEEARREYPLSPDGHLHRQKNEPVHLDVVEQPPQRSDF
                     PLAAPENAGNGPAHVRGRTAVETDLTFGLTPNRPSHSACSSEAPEERSGRRLADSESL
                     GHGAQRNTDLEREDSISRGRRSPSKPDFLYKKSAL"
     misc_feature    600..875
                     /gene="BTBD7"
                     /note="first BTB (Broad-Complex, Tramtrack and Bric a
                     brac)/POZ (poxvirus and zinc finger) domain found in
                     BTB/POZ domain-containing protein 7 (BTBD7); Region:
                     BTB1_POZ_BTBD7; cd18283"
                     /db_xref="CDD:349592"
     misc_feature    915..1358
                     /gene="BTBD7"
                     /note="second BTB (Broad-Complex, Tramtrack and Bric a
                     brac)/POZ (poxvirus and zinc finger) domain found in
                     BTB/POZ domain-containing protein 7 (BTBD7); Region:
                     BTB2_POZ_BTBD7; cd18284"
                     /db_xref="CDD:349593"
     misc_feature    1371..1664
                     /gene="BTBD7"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     BTB/POZ domain-containing protein 7 (BTBD7); Region:
                     BACK_BTBD7; cd18489"
                     /db_xref="CDD:350564"
ORIGIN      
        1 tgccgtccgg aatcaggggt cgaggaatgc aggcctgtgt acggctgctc cccgggggag
       61 aagttagatt gtccggaaat ggatgaaaag aggctcctgg atccagggtt gaaagttcgt
      121 aaaggcctct gggattatac tctgaagaac cagcagatgg aatgcctgag tgactgaaga
      181 aaatgggtgc taatgcatct aactgtcctc attcatgttc cccgagggta gggggaagtt
      241 ctcaagccca gcagactttt atagggacat catcctattc tcagcaaggc tatggttgtg
      301 aatcaaaatt atatagcctt gaccatggcc atgagaaacc acaagacaaa aaaaagagaa
      361 cctctggcct tgccaccctc aagaagaagt ttatcaagcg tcgaaaatct aataggtctg
      421 ctgatcacgc caagcagatg cgagaactcc tctctgggtg ggatgttcga gatgtcaatg
      481 cattagtgga ggaatatgag ggaacttcag ccttaaagga gctttctcta caagccagtt
      541 tggctagacc agaagcccgg acattgcaga aagatatggc cgatctttat gagtacaagt
      601 attgtaccga tgtagactta atatttcaag aaacttgttt tcctgttcat cgtgccattt
      661 tggcagcaag atgtccattt tttaaaacac tactttcttc ctcacccgag tatggggcag
      721 agatcataat ggacatcagt acagctggta tagatatgcc catgttttct gcgttgttac
      781 actaccttta tacaggagag tttggaatgg aggactcaag gtttcaaaat gttgatatcc
      841 tcgttcagct tagtgaagaa tttggaacac caaattccct tgatgtagat atgcgtggac
      901 tctttgatta catgtgttat tatgatgtcg tccttagttt ttcttcagac tctgaactgg
      961 ttgaagcttt tggtggaaat cagaactgtt tagatgaaga gctcaaagct cataaggcta
     1021 ttatttcagc acggtcccca ttttttcgaa atttattaca aaggaggata cggactggtg
     1081 aagaaatcac agaccgaact ttaaggactc ccacaagaat tatattagat gagtccatta
     1141 taccaaaaaa atatgcgaaa gttatattac actgtatgta tactgacgtg gtggacctct
     1201 ccgttttgca ctgtagcccc tctgtgggga gtctcagtga agttcaggct ctcgtcgcag
     1261 ggaagccaaa catgactagg gcagaagaag ccatggaact ttaccacata gcactgttct
     1321 tggaatttaa catgcttgca caaggctgtg aggatatcat tgctgaaagc atctcattag
     1381 ataccttaat tgccatcctc aagtggagct ctcatccata tggctctaaa tgggtacacc
     1441 gacaagcttt acatttcctc tgtgaggaat tttcccaggt catgacttcg gatgtttttt
     1501 atgaactcag caaagaccat ctgcttacgg ctatccagtc tgactaccta caggcaagtg
     1561 aacaagatat ccttaaatat ctgattaaat ggggtgagca tcagttaatg aagagaatag
     1621 cggacagaga gccaaactta ctgagtggca ctgctcatag tgtgaacaag agaggtgtca
     1681 aaagacgaga cctggacatc gaagagctta gagagatcct ttcttctctc ttaccttttg
     1741 tgcgaattga acatatttta cctataaaca gtgaagtcct aagtgatgca atgaaaagag
     1801 gcttgattag tactcctcca tcagatatgc ttcctacaac agaaggtgga aagtcaaatg
     1861 cctggttacg gcaaaaaaat gctggaatat atgttcgtcc tcgactgttc tctccctatg
     1921 tagaagaagc aaagtcagtg ctagacgaga tgatggtgga acaaacagat cttgtgcgtt
     1981 tgagaatggt tagaatgtcc aatgtgccag acacacttta catggtcaat aatgccgtgc
     2041 cacagtgctg tcacatgatc agccaccagc agatcagcag taaccagtca agccctcctt
     2101 cggttgtagc aaatgaaatc ccagttcctc gtctcctcat tatgaaagac atggtcagac
     2161 gtctgcagga gctacgacac actgagcagg tgcagagagc ctacgcactt aactgtgggg
     2221 aaggcgccac cgtgagctat gaaattcaga ttcgagtact gagagagttc gggctcgcag
     2281 atgctgctgc agagctcttg cagaatcctc acaagttctt tcctgatgaa cgttttggag
     2341 atgaaagtcc actcttgaca atgaggcagt ctgggagatg tcgagttagc agtaacccca
     2401 ctgcagaaac cgtgtttaca gatccggact cttttgtggc cttccatcca cccttgccac
     2461 ctccaccacc gccgtaccac cccccagcta ccccagtcca tcaccacctc aaagcgggct
     2521 ggagacaaag acctcccagc caacaccctt cacgttcgtt ctcttatccc tgtaatcatt
     2581 cactgtttca ctccagagca gctcctaaag cagtgccccc tccagtctgt ttgccgggtg
     2641 ttcaagcagc aggacctgac tgtcccggca ccacagggct ggggagacag acgggagccg
     2701 ccgccgcctc agcagcagta gtgtctgaga gacaagtgtg tacacaacct gtgctaaatg
     2761 atctaatgcc agatatcgcc atgggagtgt ccacactgtc actcaaggac aggaggcttc
     2821 ccgaacttgc tgtagacaca gaattaagcc agtcagtttc tgaagtagga ccagggcctc
     2881 cccagcatct atcgtgtatt ccacagaggc atacacacac gtctcgaaag aaacacacac
     2941 tagagcaaaa accagacact cgagaaaatc agcaggaata tccagatttc tatgacttct
     3001 cgaacgctgc ttgtagacca tctactccgg ctcccggcag acgcagccct tccccttcgc
     3061 agggtggata ttttggtccc gatttgtata gccacaataa ggtatcacca agcggcttaa
     3121 agtcagccta cctacctggc cagacctctc ctaaaaagca ggaagaagct aggagagaat
     3181 atccactttc ccctgatggg catctgcaca gacaaaagaa tgagccggta cacctcgatg
     3241 ttgttgagca gcctccccag cggtcggact ttcctttggc agccccagaa aatgccggca
     3301 acggtccagc ccatgtcagg gggcggacag cagtggaaac tgacttgact tttgggctga
     3361 ctcctaacag accttcacat tctgcatgta gctctgaagc tccagaagag agatctggta
     3421 gaagactggc agacagcgag tccttgggcc atggagctca gcgaaataca gatttggaaa
     3481 gggaagattc aatcagcaga ggaaggaggt caccaagcaa gccagacttc ctctacaaaa
     3541 agtctgccct ttgagagcaa cctccaagtc gtctgtgcct gagatgtgaa acatcccatt
     3601 ttatgatgta acccaacaac ttagagtatt gatgccagct gataactcag tttcacggta
     3661 ttttattctg gtttttgtat atacacgtct attagacatg gcatgctaag agggttattc
     3721 tgaatgctgc gtctgtctat tttgtgttgg aacaactgtg tgggggaagc atttttaaga
     3781 gcaagcaagc tggcactttt tttttttctc tttacaaatg atggaatttt tttgcacttg
     3841 tacttttatc tgtattgttt ttatatcagt atgttaaact ttattgccac atttaaagga
     3901 ctgtattttc atactttttt gcattttacc tttcatctag caatttccac gtgcattgga
     3961 ttgcacacta agatgtattt tcttatgaaa tagttctgtg tttatttttt aattatagaa
     4021 attccaaaga acagcacatc aaaatgctcc tctcttttca gtcattgttt tagttcagaa
     4081 atcttgccgc tcagtcttca taaatctaac gtcgtacttt ttaaatgagt cttgggagct
     4141 ggtcttcatt cctccagcag gaatccagtc aggatcctga agtttcctgg ttcagtaaag
     4201 aacaagaagg agaaaagcct tttgtgtcca gactcaagct attgctttat tcacagtgca
     4261 gatgctgtta gaatcactgc agattctggt agtgtggatt agagtttcac tagatgaggt
     4321 tctaaagcga tcggctttcc tggaatccta aagaagtgga attagcgaag taacttaagc
     4381 ctgccctacg ggattgccgg ttctgagctg cgactctcca gatgagtccg gggagtgact
     4441 gcttgctgcc ttcagttgtc ttgctctctg tgggaaaaaa acaaaagggc ttcagcctta
     4501 cggatgtcat ttggtgtttg taagcatata ttttctttta agtgtttttc aaagtgtgtc
     4561 tgaattttgg tgtcctttaa agaagttgtt gtataatgca taatgctttg tcaccaaaaa
     4621 agaaaaagaa accttttttt tttccttcgg tgaaatacta cgtgtcctac ttgaactcca
     4681 ctggggacgc tggtttggga ttttactgaa ccactgagca catgggatct tttaagatcc
     4741 tctcccttag aagggcaatg tgtgagctaa ggactgtttt tttcttactc tccaatgtaa
     4801 atacattagt atttgagttt ttaaatcact tcgacattat ttgagcattc actttctatt
     4861 tttacacata cacacacagc cgtggcactt agaagaaaag agactttctg aacactccct
     4921 cccgtgaagg atgtttggga gcctcttctc tgtgtatgta tatatatata aaactctgaa
     4981 tcactcacac tcactctaaa actatgcagg gctagggagc ctttacaagc taccatataa
     5041 atgaatgaca tgcactttta agtaaatagg tttctattgg gtgtcaagaa ctctgatttc
     5101 tcccgaaact gtagtttctc ttataatctt ttcctacttt taccctgtgg atatacactc
     5161 aggaataatc tgacatttaa aaaaatccta acagtaggta gtcttaaaga tgggaacaca
     5221 tccgtttgtc tgtctacacc ggcaaaccgc taccactcgc tctgctgcct ggctagttag
     5281 ctgctgcccg tacgtccctc gatgtcggcc aagctgcaca ccgagcccca gatctcccag
     5341 agtcaacgcc aggctgctgt gaggtcagct acacgtcgtc gcctttgagg ctcctttttt
     5401 ttaaagatga aaaacgttag gactctgttc tcatttttag taggtttttg actttatgat
     5461 agatgacggt gtcttttgaa gccaatctca gtctgtctct cctcagaaac acaaagtgtt
     5521 aattccatca tattccttaa tgtgtattta tatacatgtg ttgacatgaa ttattttgat
     5581 acagttttaa atttctattc tgaattcaga ctgtgctgtg ctggtactgc aaagaagagt
     5641 gagtagacat agttggtggg ggaaatcttt ctcatctcca acctgttttt tttaaaaaat
     5701 gttagacaag agctattggt gccacacatg catttttctg aaaatttatt aaatattctt
     5761 tcacgtccct aaaatataat tataaaagaa gtggccactg ttcatagttt tatttaattt
     5821 atgaagtttg cttttaataa tttagtagca tacctggcta aactctatgt atagagagga
     5881 acgtgctgtg gatcgtggac tgctgtgact tccagaaggg aaacagatgt gggtttagtg
     5941 ttagggtagg tgttagtgga cttttaatgt atcttgtgaa gtatggtcag tagggtaggt
     6001 tgaatagctg tgtgcctctg gcttttgaac ccatctattc agttttcttt aatgcttact
     6061 aagcattaaa atctttcagt gctgtacgaa gataaatgtg aagtctgagt aagattgctc
     6121 tcagaaataa acatgtataa tataaaattt aggccacggg acctagcatt ttactcggtg
     6181 tagaaatttc atgagaacca aatctcaaca taccagatct cctctcgagg ccatggacaa
     6241 tcaggccatt agacaatcgc cacctttggt gtccgccgag tcgaggttag cgaataccag
     6301 ttagatcctg gagcagaagg agaagatctg catttcttca agacgctgtt ggtctgtttc
     6361 ttatatttct gttttagttt tgtgattttg attagtaatt tcagttcaga gtcacctgtg
     6421 actcctaagg gaaaaagata gcagcatgaa aggcaaaaat tattcctgaa aaaatcgttg
     6481 tttgaattta ccatgtgcta ttcatactct ttttcacacg cccctgtagc tttttctagg
     6541 catgtcccta gacctcatct ctcctgacat tttggtaacc aggtagactt taaatgagtt
     6601 ctttttattt gagtcttttg gggttttttt tggttgaact ctatgaaact ttgcttaatt
     6661 cttgtttatg cttccttaaa aaactgttct ttattgagtt ttctttggat ttgttgttca
     6721 agctctagta gcagtggacc atacttgtcc ctttggattt aggtgatgat ggaggggaaa
     6781 cagcgtatgc agcatcggca gcggggtgca aagatgaccc ccacgtgctg gcagcagcgg
     6841 gacgcaaaga tgacccccgc gtgttggtct ctagaggtga aagatgaaca cctctcagta
     6901 actactcatc agaatatgaa ttttcatgtt gaaatccgcc ttttagggga aaatgtgttt
     6961 cctgaaacac ttgtaagata ctgcttttgc aattctaagg catttatgtt tttatcttag
     7021 gactgaactc aaagggaaat gtttgccttt tttttttttt ttaattattt ggttgacctt
     7081 caacttactg ttgaacgtta ctattaaagc agcagtgatg ggtgctattc cccgttctgc
     7141 agtggtttac tttgtctact aaggagttta ctttaaaacc tcattacaga taaccttact
     7201 aaaagaatta ccgtcacaca ctaaagtgta ttgtattatt ttccattaac actgttgtac
     7261 gaacagtgtc ttatgaaatg ttaagttgtc tttttgtcct gtcgattgca ataggtgtta
     7321 tgtaattgtt gtattggcaa gttttttgat ttttcttttc ctatagagaa gcctcagacc
     7381 atgagtcaat cttccatatt ctgaatatta taatgctgtg gccctttcta tagaaagatt
     7441 acttgcaagt gttgtgtctt gaaaataact tcttgtgtct gtgtgtttac gtgggttctg
     7501 tctaagagct gaaacgagct ctggaagctt catcgtgtac ctgcacgtga ctgtgtatct
     7561 gggttccatg ggcacgtggg acggaatcct gctcttaggt ggggtggctg aacgataaag
     7621 attcctgaac tccacttgct gtttgtgtac cacgtctgtg tgtcagagag gtggtatctt
     7681 ctacaacact gcatttcttg tggttgtgct gttactggta taaagtcaag tgccttcaat
     7741 gctaaaggct cagaaatttt tcttaaactg atttcacgtc ctatgcaagt gttttctaca
     7801 acctgcgtaa ccagtacttt gtaaaacttg tttacgcttc aaatgtacat agtgtttttt
     7861 aaagaaatat atagtatttt tatttaggta cctccaaact tgaattcgtc tgtgtgaagc
     7921 attgtaaaat gatacatttc tcttttgagc accattacag ttgtacaaag gttttcactg
     7981 gttctatttt tctactgtta ctgacaagca tgtaacactg actttatcct acatatagtt
     8041 ggcgtttcaa ataaatggct tggatagaa
//
LOCUS       XR_004348139            2641 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BTB domain containing 7 (BTBD7),
            transcript variant X3, misc_RNA.
ACCESSION   XR_004348139
VERSION     XR_004348139.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2641
                     /gene="BTBD7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:116747924"
     misc_RNA        1..2641
                     /gene="BTBD7"
                     /product="BTB domain containing 7, transcript variant X3"
                     /db_xref="GeneID:116747924"
ORIGIN      
        1 ctgctcgctc caggcgtcaa aatggcggcg agagaaacct ggagaagccc cggagcctga
       61 gccactgaca ggagctgaga cgggaggtgg cggcggcgac ggcaggagga ggatggccgg
      121 gggcgctggc gccggtgcgg acggcggtgc aggcggcggc ggcgggggcg acggccgcgg
      181 tcccagcggc ggcagcagca gcagcggcgg gaggagcctc cgggaaatgg atgaaaagag
      241 gctcctggat ccagggttga aagttcgtaa aggcctctgg gattatactc tgaagaacca
      301 gcagatggaa tgcctgagtg actgaagaaa atgggtgcta atgcatctaa ctgtcctcat
      361 tcatgttccc cgagggtagg gggaagttct caagcccagc agacttttat agggacatca
      421 tcctattctc agcaaggcta tggttgtgaa tcaaaattat atagccttga ccatggccat
      481 gagaaaccac aagacaaaaa aaagagaacc tctggccttg ccaccctcaa gaagaagttt
      541 atcaagcgtc gaaaatctaa taggtctgct gatcacgcca agcagatgcg agaactcctc
      601 tctgggtggg atgttcgaga tgtcaatgca ttagtggagg aatatgaggg aacttcagcc
      661 ttaaaggagc tttctctaca agccagtttg gctagaccag aagcccggac attgcagaaa
      721 gatatggccg atctttatga gtacaagtat tgtaccgatg tagacttaat atttcaagaa
      781 acttgttttc ctgttcatcg tgccattttg gcagcaagat gtccattttt taaaacacta
      841 ctttcttcct cacccgagta tggggcagag atcataatgg acatcagtac agctggtata
      901 gatatgccca tgttttctgc gttgttacac tacctttata caggagagtt tggaatggag
      961 gactcaaggt ttcaaaatgt tgatatcctc gttcagctta gtgaagaatt tggaacacca
     1021 aattcccttg atgtagatat gcgtggactc tttgattaca tgtgttatta tgatgtcgtc
     1081 cttagttttt cttcagactc tgaactggtt gaagcttttg gtggaaatca gaactgttta
     1141 gatgaagagc tcaaagctca taaggctatt atttcagcac ggtccccatt ttttcgaaat
     1201 ttattacaaa ggaggatacg gactggtgaa gaaatcacag accgaacttt aaggactccc
     1261 acaagaatta tattagatga gtccattata ccaaaaaaat atgcgaaagt tatattacac
     1321 tgtatgtata ctgacgtggt ggacctctcc gttttgcact gtagcccctc tgtggggagt
     1381 ctcagtgaag ttcaggctct cgtcgcaggg aagccaaaca tgactagggc agaagaagcc
     1441 atggaacttt accacatagc actgttcttg gaatttaaca tgcttgcaca aggctgtgag
     1501 gatatcattg ctgaaagcat ctcattagat accttaattg ccatcctcaa gtggagctct
     1561 catccatatg gctctaaatg ggtacaccga caagctttac atttcctctg tgaggaattt
     1621 tcccaggtca tgacttcgga tgttttttat gaactcagca aagaccatct gcttacggct
     1681 atccagtctg actacctaca ggcaagtgaa caagatatcc ttaaatatct gattaaatgg
     1741 ggtgagcatc agttaatgaa gagaatagcg gacagagagc caaacttact gagtggcact
     1801 gctcatagtg tgaacaagag aggtgtcaaa agacgagacc tggacatcga agagcttaga
     1861 gagatccttt cttctctctt accttttgtg cgaattgaac atattttacc tataaacagt
     1921 gaagtcctaa gtgatgcaat gaaaagaggc ttgattagta ctcctccatc agatatgctt
     1981 cctacaacag aaggtggaaa gtcaaatgcc tggttacggc aaaaaaatgc tggaatatat
     2041 gttcgtcctc gactgttctc tccctatgta gaagaagcaa agtcagtgct agacgagatg
     2101 atggtggaac aaacagatct tgtgcgtttg agaatggtta gaatgtccaa tgtgccagac
     2161 acactttaca tggtcaataa tgccgtgcca cagtgctgtc acatgatcag ccaccagcag
     2221 atcagcagta accagtcaag ccctccttcg gttgtagcaa atgaaatccc aggtggtctt
     2281 ttgtgtagct caggtattgt gcctacaaac tatttctctt cttccagttc ctcgtctcct
     2341 cattatgaaa gacatggtca gacgtctgca ggagctacga cacactgagc aggtgcagag
     2401 agcctacgca cttaactgtg gggaaggcgc caccgtgagc tatgaaattc agattcgagt
     2461 actgagagag ttcgggctcg cagatgctgc tgcagagctc ttgcagaatc ctcacaagtt
     2521 ctttcctgat gaacgttttg gagatgaaag tccactcttg acaatgaggc agtctgggag
     2581 atgtcgagtt agcagtaacc ccactgcaga aaccgtgttt acagatccgg actcttttgt
     2641 g
//
LOCUS       XM_032620621            6770 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus BTB domain containing 7 (BTBD7),
            transcript variant X4, mRNA.
ACCESSION   XM_032620621
VERSION     XM_032620621.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6770
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6770
                     /gene="BTBD7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 12 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747924"
     CDS             183..2255
                     /gene="BTBD7"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 7 isoform X2"
                     /protein_id="XP_032476512.1"
                     /db_xref="GeneID:116747924"
                     /translation="MTSDVFYELSKDHLLTAIQSDYLQASEQDILKYLIKWGEHQLMK
                     RIADREPNLLSGTAHSVNKRGVKRRDLDIEELREILSSLLPFVRIEHILPINSEVLSD
                     AMKRGLISTPPSDMLPTTEGGKSNAWLRQKNAGIYVRPRLFSPYVEEAKSVLDEMMVE
                     QTDLVRLRMVRMSNVPDTLYMVNNAVPQCCHMISHQQISSNQSSPPSVVANEIPVPRL
                     LIMKDMVRRLQELRHTEQVQRAYALNCGEGATVSYEIQIRVLREFGLADAAAELLQNP
                     HKFFPDERFGDESPLLTMRQSGRCRVSSNPTAETVFTDPDSFVAFHPPLPPPPPPYHP
                     PATPVHHHLKAGWRQRPPSQHPSRSFSYPCNHSLFHSRAAPKAVPPPVCLPGVQAAGP
                     DCPGTTGLGRQTGAAAASAAVVSERQVCTQPVLNDLMPDIAMGVSTLSLKDRRLPELA
                     VDTELSQSVSEVGPGPPQHLSCIPQRHTHTSRKKHTLEQKPDTRENQQEYPDFYDFSN
                     AACRPSTPAPGRRSPSPSQGGYFGPDLYSHNKVSPSGLKSAYLPGQTSPKKQEEARRE
                     YPLSPDGHLHRQKNEPVHLDVVEQPPQRSDFPLAAPENAGNGPAHVRGRTAVETDLTF
                     GLTPNRPSHSACSSEAPEERSGRRLADSESLGHGAQRNTDLEREDSISRGRRSPSKPD
                     FLYKKSAL"
     misc_feature    <183..365
                     /gene="BTBD7"
                     /note="BACK (BTB and C-terminal Kelch) domain; Region:
                     BACK; cl28903"
                     /db_xref="CDD:475122"
ORIGIN      
        1 atcggcaggc ggactctcaa ccactgcgcc accagggaag cccaggctgt gaggatatca
       61 ttgctgaaag catctcatta gataccttaa ttgccatcct caagtggagc tctcatccat
      121 atggctctaa atgggtacac cgacaagctt tacatttcct ctgtgaggaa ttttcccagg
      181 tcatgacttc ggatgttttt tatgaactca gcaaagacca tctgcttacg gctatccagt
      241 ctgactacct acaggcaagt gaacaagata tccttaaata tctgattaaa tggggtgagc
      301 atcagttaat gaagagaata gcggacagag agccaaactt actgagtggc actgctcata
      361 gtgtgaacaa gagaggtgtc aaaagacgag acctggacat cgaagagctt agagagatcc
      421 tttcttctct cttacctttt gtgcgaattg aacatatttt acctataaac agtgaagtcc
      481 taagtgatgc aatgaaaaga ggcttgatta gtactcctcc atcagatatg cttcctacaa
      541 cagaaggtgg aaagtcaaat gcctggttac ggcaaaaaaa tgctggaata tatgttcgtc
      601 ctcgactgtt ctctccctat gtagaagaag caaagtcagt gctagacgag atgatggtgg
      661 aacaaacaga tcttgtgcgt ttgagaatgg ttagaatgtc caatgtgcca gacacacttt
      721 acatggtcaa taatgccgtg ccacagtgct gtcacatgat cagccaccag cagatcagca
      781 gtaaccagtc aagccctcct tcggttgtag caaatgaaat cccagttcct cgtctcctca
      841 ttatgaaaga catggtcaga cgtctgcagg agctacgaca cactgagcag gtgcagagag
      901 cctacgcact taactgtggg gaaggcgcca ccgtgagcta tgaaattcag attcgagtac
      961 tgagagagtt cgggctcgca gatgctgctg cagagctctt gcagaatcct cacaagttct
     1021 ttcctgatga acgttttgga gatgaaagtc cactcttgac aatgaggcag tctgggagat
     1081 gtcgagttag cagtaacccc actgcagaaa ccgtgtttac agatccggac tcttttgtgg
     1141 ccttccatcc acccttgcca cctccaccac cgccgtacca ccccccagct accccagtcc
     1201 atcaccacct caaagcgggc tggagacaaa gacctcccag ccaacaccct tcacgttcgt
     1261 tctcttatcc ctgtaatcat tcactgtttc actccagagc agctcctaaa gcagtgcccc
     1321 ctccagtctg tttgccgggt gttcaagcag caggacctga ctgtcccggc accacagggc
     1381 tggggagaca gacgggagcc gccgccgcct cagcagcagt agtgtctgag agacaagtgt
     1441 gtacacaacc tgtgctaaat gatctaatgc cagatatcgc catgggagtg tccacactgt
     1501 cactcaagga caggaggctt cccgaacttg ctgtagacac agaattaagc cagtcagttt
     1561 ctgaagtagg accagggcct ccccagcatc tatcgtgtat tccacagagg catacacaca
     1621 cgtctcgaaa gaaacacaca ctagagcaaa aaccagacac tcgagaaaat cagcaggaat
     1681 atccagattt ctatgacttc tcgaacgctg cttgtagacc atctactccg gctcccggca
     1741 gacgcagccc ttccccttcg cagggtggat attttggtcc cgatttgtat agccacaata
     1801 aggtatcacc aagcggctta aagtcagcct acctacctgg ccagacctct cctaaaaagc
     1861 aggaagaagc taggagagaa tatccacttt cccctgatgg gcatctgcac agacaaaaga
     1921 atgagccggt acacctcgat gttgttgagc agcctcccca gcggtcggac tttcctttgg
     1981 cagccccaga aaatgccggc aacggtccag cccatgtcag ggggcggaca gcagtggaaa
     2041 ctgacttgac ttttgggctg actcctaaca gaccttcaca ttctgcatgt agctctgaag
     2101 ctccagaaga gagatctggt agaagactgg cagacagcga gtccttgggc catggagctc
     2161 agcgaaatac agatttggaa agggaagatt caatcagcag aggaaggagg tcaccaagca
     2221 agccagactt cctctacaaa aagtctgccc tttgagagca acctccaagt cgtctgtgcc
     2281 tgagatgtga aacatcccat tttatgatgt aacccaacaa cttagagtat tgatgccagc
     2341 tgataactca gtttcacggt attttattct ggtttttgta tatacacgtc tattagacat
     2401 ggcatgctaa gagggttatt ctgaatgctg cgtctgtcta ttttgtgttg gaacaactgt
     2461 gtgggggaag catttttaag agcaagcaag ctggcacttt ttttttttct ctttacaaat
     2521 gatggaattt ttttgcactt gtacttttat ctgtattgtt tttatatcag tatgttaaac
     2581 tttattgcca catttaaagg actgtatttt catacttttt tgcattttac ctttcatcta
     2641 gcaatttcca cgtgcattgg attgcacact aagatgtatt ttcttatgaa atagttctgt
     2701 gtttattttt taattataga aattccaaag aacagcacat caaaatgctc ctctcttttc
     2761 agtcattgtt ttagttcaga aatcttgccg ctcagtcttc ataaatctaa cgtcgtactt
     2821 tttaaatgag tcttgggagc tggtcttcat tcctccagca ggaatccagt caggatcctg
     2881 aagtttcctg gttcagtaaa gaacaagaag gagaaaagcc ttttgtgtcc agactcaagc
     2941 tattgcttta ttcacagtgc agatgctgtt agaatcactg cagattctgg tagtgtggat
     3001 tagagtttca ctagatgagg ttctaaagcg atcggctttc ctggaatcct aaagaagtgg
     3061 aattagcgaa gtaacttaag cctgccctac gggattgccg gttctgagct gcgactctcc
     3121 agatgagtcc ggggagtgac tgcttgctgc cttcagttgt cttgctctct gtgggaaaaa
     3181 aacaaaaggg cttcagcctt acggatgtca tttggtgttt gtaagcatat attttctttt
     3241 aagtgttttt caaagtgtgt ctgaattttg gtgtccttta aagaagttgt tgtataatgc
     3301 ataatgcttt gtcaccaaaa aagaaaaaga aacctttttt ttttccttcg gtgaaatact
     3361 acgtgtccta cttgaactcc actggggacg ctggtttggg attttactga accactgagc
     3421 acatgggatc ttttaagatc ctctccctta gaagggcaat gtgtgagcta aggactgttt
     3481 ttttcttact ctccaatgta aatacattag tatttgagtt tttaaatcac ttcgacatta
     3541 tttgagcatt cactttctat ttttacacat acacacacag ccgtggcact tagaagaaaa
     3601 gagactttct gaacactccc tcccgtgaag gatgtttggg agcctcttct ctgtgtatgt
     3661 atatatatat aaaactctga atcactcaca ctcactctaa aactatgcag ggctagggag
     3721 cctttacaag ctaccatata aatgaatgac atgcactttt aagtaaatag gtttctattg
     3781 ggtgtcaaga actctgattt ctcccgaaac tgtagtttct cttataatct tttcctactt
     3841 ttaccctgtg gatatacact caggaataat ctgacattta aaaaaatcct aacagtaggt
     3901 agtcttaaag atgggaacac atccgtttgt ctgtctacac cggcaaaccg ctaccactcg
     3961 ctctgctgcc tggctagtta gctgctgccc gtacgtccct cgatgtcggc caagctgcac
     4021 accgagcccc agatctccca gagtcaacgc caggctgctg tgaggtcagc tacacgtcgt
     4081 cgcctttgag gctccttttt tttaaagatg aaaaacgtta ggactctgtt ctcattttta
     4141 gtaggttttt gactttatga tagatgacgg tgtcttttga agccaatctc agtctgtctc
     4201 tcctcagaaa cacaaagtgt taattccatc atattcctta atgtgtattt atatacatgt
     4261 gttgacatga attattttga tacagtttta aatttctatt ctgaattcag actgtgctgt
     4321 gctggtactg caaagaagag tgagtagaca tagttggtgg gggaaatctt tctcatctcc
     4381 aacctgtttt ttttaaaaaa tgttagacaa gagctattgg tgccacacat gcatttttct
     4441 gaaaatttat taaatattct ttcacgtccc taaaatataa ttataaaaga agtggccact
     4501 gttcatagtt ttatttaatt tatgaagttt gcttttaata atttagtagc atacctggct
     4561 aaactctatg tatagagagg aacgtgctgt ggatcgtgga ctgctgtgac ttccagaagg
     4621 gaaacagatg tgggtttagt gttagggtag gtgttagtgg acttttaatg tatcttgtga
     4681 agtatggtca gtagggtagg ttgaatagct gtgtgcctct ggcttttgaa cccatctatt
     4741 cagttttctt taatgcttac taagcattaa aatctttcag tgctgtacga agataaatgt
     4801 gaagtctgag taagattgct ctcagaaata aacatgtata atataaaatt taggccacgg
     4861 gacctagcat tttactcggt gtagaaattt catgagaacc aaatctcaac ataccagatc
     4921 tcctctcgag gccatggaca atcaggccat tagacaatcg ccacctttgg tgtccgccga
     4981 gtcgaggtta gcgaatacca gttagatcct ggagcagaag gagaagatct gcatttcttc
     5041 aagacgctgt tggtctgttt cttatatttc tgttttagtt ttgtgatttt gattagtaat
     5101 ttcagttcag agtcacctgt gactcctaag ggaaaaagat agcagcatga aaggcaaaaa
     5161 ttattcctga aaaaatcgtt gtttgaattt accatgtgct attcatactc tttttcacac
     5221 gcccctgtag ctttttctag gcatgtccct agacctcatc tctcctgaca ttttggtaac
     5281 caggtagact ttaaatgagt tctttttatt tgagtctttt ggggtttttt ttggttgaac
     5341 tctatgaaac tttgcttaat tcttgtttat gcttccttaa aaaactgttc tttattgagt
     5401 tttctttgga tttgttgttc aagctctagt agcagtggac catacttgtc cctttggatt
     5461 taggtgatga tggaggggaa acagcgtatg cagcatcggc agcggggtgc aaagatgacc
     5521 cccacgtgct ggcagcagcg ggacgcaaag atgacccccg cgtgttggtc tctagaggtg
     5581 aaagatgaac acctctcagt aactactcat cagaatatga attttcatgt tgaaatccgc
     5641 cttttagggg aaaatgtgtt tcctgaaaca cttgtaagat actgcttttg caattctaag
     5701 gcatttatgt ttttatctta ggactgaact caaagggaaa tgtttgcctt tttttttttt
     5761 tttaattatt tggttgacct tcaacttact gttgaacgtt actattaaag cagcagtgat
     5821 gggtgctatt ccccgttctg cagtggttta ctttgtctac taaggagttt actttaaaac
     5881 ctcattacag ataaccttac taaaagaatt accgtcacac actaaagtgt attgtattat
     5941 tttccattaa cactgttgta cgaacagtgt cttatgaaat gttaagttgt ctttttgtcc
     6001 tgtcgattgc aataggtgtt atgtaattgt tgtattggca agttttttga tttttctttt
     6061 cctatagaga agcctcagac catgagtcaa tcttccatat tctgaatatt ataatgctgt
     6121 ggccctttct atagaaagat tacttgcaag tgttgtgtct tgaaaataac ttcttgtgtc
     6181 tgtgtgttta cgtgggttct gtctaagagc tgaaacgagc tctggaagct tcatcgtgta
     6241 cctgcacgtg actgtgtatc tgggttccat gggcacgtgg gacggaatcc tgctcttagg
     6301 tggggtggct gaacgataaa gattcctgaa ctccacttgc tgtttgtgta ccacgtctgt
     6361 gtgtcagaga ggtggtatct tctacaacac tgcatttctt gtggttgtgc tgttactggt
     6421 ataaagtcaa gtgccttcaa tgctaaaggc tcagaaattt ttcttaaact gatttcacgt
     6481 cctatgcaag tgttttctac aacctgcgta accagtactt tgtaaaactt gtttacgctt
     6541 caaatgtaca tagtgttttt taaagaaata tatagtattt ttatttaggt acctccaaac
     6601 ttgaattcgt ctgtgtgaag cattgtaaaa tgatacattt ctcttttgag caccattaca
     6661 gttgtacaaa ggttttcact ggttctattt ttctactgtt actgacaagc atgtaacact
     6721 gactttatcc tacatatagt tggcgtttca aataaatggc ttggatagaa
//
LOCUS       XM_032620632            7304 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FERM domain containing 4A (FRMD4A),
            transcript variant X1, mRNA.
ACCESSION   XM_032620632
VERSION     XM_032620632.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7304
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7304
                     /gene="FRMD4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747943"
     CDS             1..3363
                     /gene="FRMD4A"
                     /codon_start=1
                     /product="FERM domain-containing protein 4A isoform X1"
                     /protein_id="XP_032476523.1"
                     /db_xref="GeneID:116747943"
                     /translation="MVVQAAVAPNRSQRLLLKIPYGSLRRRSVERMTEGRRCQVHLLD
                     DRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTDETGHLNWLQLDRRVLEHDF
                     PKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYKELIDVDSEVVFELASY
                     ILQEAKGDFSSNEVVRTDLKKLPALPTQALKEHPSLAYCEDRVIEHYKKLNGQTRGQA
                     IVNYMSIVESLPTYGVHYYAVKDKQGIPWWLGLSYKGIFQYDYHDKVKPRKIFQWRQL
                     ENLYFREKKFSVEVHDPRRASVTRRTFGHSGIAVHTWYACPALIKSIWAMAISQHQFY
                     LDRKQSKSKIHAARSLSEIAIDLTETGTLKTSKLASMGSKGKIISGSSGSLLSSGSQE
                     SDSSQSAKKDMLAALKSRQEALEETLRQRLEELKRLCLREAELTGKLPVEYPLDPGEE
                     PPIVRRRIGTAFKLDEQKILPKGEEAELERLEREFAIQSQITEAARRLASDPNVSKKL
                     KKQRKTSYLNALKKLQEIESAINENRVKSGKKPTQRASLIIEDGNIASEDSSLSDALV
                     LEDEDSQVTSTLSPLQSPHKGLPPRPPSHNRPPPPQSLEGLRQMHCHRNDYDKSPIKP
                     KMWSESSLDEPYEKVKKRSSHSHSSSHKRFPSTGSCAEAGGGGSSLQTSPIRSLPPWN
                     SQCSMPSTPDLRVRSPHYVHSTRSVDLSPTRLHSLALHFRHRSSSLESQGKLLGSEND
                     TGSPDFYTPRTRSSNGSDPMDDCSSCTSHSSSEHYYPAQMNANYSTLAEDSPSKARAR
                     QRQRAAGALGAANSGSMPNLAARGGGHGHGVYLHSQSQPSSQYRIKEYPLYVEGGATP
                     VVVRSLESDQEGHYSVKAQFKTSNSYTAGGLFRESWRGGDEGDAGRLTPSRSQILRTP
                     SLGRDGGAHDKGAGRAAVSDELRQWYQRSSASHKEHSRLSHASSASSDGGSQYSASSQ
                     STFVAHSRVTRMPQMCKATSAALPQSQRSSTPSSEVGATPPGSPHHILTWQTGFALRK
                     TTRLDVNQVHSNSETKRVLTRRTICPCLSPESSRTDQPQGGSLKSEVSFGSHGCHHCS
                     KNKFKFKDPVGFIHQVATQFLMELETILVLQT"
     misc_feature    100..366
                     /gene="FRMD4A"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); Region: FERM_F1_FRMD4B; cd17200"
                     /db_xref="CDD:340720"
     misc_feature    109..711
                     /gene="FRMD4A"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    697..1029
                     /gene="FRMD4A"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); Region:
                     FERM_C_FRMD4A_FRMD4B; cd13191"
                     /db_xref="CDD:270012"
     misc_feature    order(721..723,772..774,778..780,805..807)
                     /gene="FRMD4A"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    order(817..819,832..843,970..972,982..984,991..996)
                     /gene="FRMD4A"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    970..1005
                     /gene="FRMD4A"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1114..1521
                     /gene="FRMD4A"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     Region: CUPID; pfam11819"
                     /db_xref="CDD:463360"
ORIGIN      
        1 atggtggttc aggctgcagt ggctccgaat agatcccaga gacttttact gaaaattcct
       61 tatggatctc tgagaagacg cagcgtggag aggatgacgg aaggccgtcg atgtcaagta
      121 catcttcttg atgaccggaa gctggaactc ctagtacagc ccaagctttt ggccaaggag
      181 ctgcttgacc tcgtggcatc tcacttcaac ctgaaggaga aggaatactt tggaatcgcc
      241 ttcacagatg agacgggaca cttaaactgg cttcaactag atcgaagagt cttggaacac
      301 gacttcccca aaaagtcggg accagtggtt ttatactttt gtgtcaggtt ctatatagag
      361 agcatctcat acctaaagga caatgccacc atagagctct tcttcctgaa cgccaagtcc
      421 tgtatctaca aggagctgat tgatgttgac agtgaagtgg tgtttgaatt agcctcgtat
      481 attttacagg aggcaaaggg agacttttct agcaatgaag tggtgaggac ggacttgaag
      541 aaactaccag cacttcccac gcaggctctg aaggagcacc cctccctggc ttactgcgag
      601 gaccgggtca tcgagcacta caagaaactg aacggccaga ccagaggcca agccattgtc
      661 aactacatga gcatcgtgga gtctctccca acctacgggg ttcactatta cgcagtgaag
      721 gacaagcagg ggataccgtg gtggctggga ctgagctaca aaggcatctt ccagtatgac
      781 taccacgata aagtcaagcc caggaagata ttccagtgga ggcagttgga aaacctgtat
      841 ttcagagaga agaagttttc tgtggaagtt catgacccac gcagggcttc agtgacgagg
      901 aggacgtttg gacacagcgg catcgcagtg cacacgtggt acgcgtgtcc ggcactgatc
      961 aagtccatct gggctatggc cattagccaa caccagttct atctggacag aaagcagagt
     1021 aagtcgaaga tccatgccgc ccgcagcctg agcgaaatcg ccatcgacct gacggagacg
     1081 gggacgctga agacgtcgaa gctggccagc atgggcagca agggcaagat catcagcggc
     1141 agcagcggca gcctgctgtc ctcaggttct caggaatcag atagctcgca gtcggccaag
     1201 aaagacatgc tggcagcctt gaaatccagg caggaagctc tggaggaaac gcttcgccag
     1261 cggctggaag agctgaagag actctgcctc cgagaagccg agctgacggg aaaactgccc
     1321 gtggagtatc ccctggatcc aggagaggaa ccacccattg ttcgaagaag aatcgggaca
     1381 gccttcaaac tggacgagca gaaaatcctg cccaaaggag aggaggccga gctggaacgc
     1441 ctggagcggg agtttgccat tcagtcccag attacggagg ctgcccgccg cctggccagt
     1501 gaccctaacg tcagcaaaaa actgaagaag cagaggaaga cctcttacct gaatgcactg
     1561 aagaagctgc aggagattga aagcgcaatc aacgagaacc gcgtcaagtc tgggaagaaa
     1621 cccacccagc gggcctcgct gatcatcgaa gatggaaata ttgccagtga agacagttcc
     1681 ctgtcagatg ccctagttct agaagatgaa gactctcagg tcaccagcac actgtccccc
     1741 ttacagtccc ctcacaaagg gctccctcct cggccaccgt cgcacaaccg gccgccccct
     1801 ccgcagtccc tggagggact caggcagatg cactgtcacc gcaacgacta tgacaagtcg
     1861 cccataaagc ccaaaatgtg gagcgagtcc tcattagacg agccttacga gaaggtcaag
     1921 aagcgttcct cccacagtca ctccagtagc cacaagcgct tccccagcac ggggagctgc
     1981 gctgaagcag gagggggagg cagctccctg cagaccagcc ccatccgcag cctcccgccc
     2041 tggaactctc agtgcagcat gccgtccaca cccgacctcc gagtccggag tccccactac
     2101 gtgcattcca cgaggtcggt ggacctcagc cccacgcggc tgcacagcct cgccctgcac
     2161 tttcggcacc ggagctccag cttggagtcc cagggcaagc tcctgggctc ggagaacgac
     2221 acggggagcc ccgacttcta cacgccacgg actcgcagca gcaacggctc ggaccccatg
     2281 gacgactgct cgtcgtgcac cagccactcg agctcggagc actactaccc ggcgcagatg
     2341 aatgccaact actccacgct ggccgaggac tcgccgtcca aggcgcgcgc gcggcagcgg
     2401 cagcgggcgg cgggcgcgct gggcgcggcg aactcgggca gcatgcccaa cctggcggcg
     2461 cgcggcggcg gccacggcca cggcgtctac ctgcacagcc agagccagcc cagctcgcag
     2521 taccgcatca aggagtaccc gctgtacgtg gagggcggcg ccacgcccgt ggtggtgcgc
     2581 agcctggaga gcgaccagga gggccactac agcgtcaagg cgcagttcaa gacctccaac
     2641 tcgtacacgg ccggcggcct gttccgggag agctggcgcg gcggcgacga gggcgacgcg
     2701 ggccgcctga cgccgtcgcg ctcgcagatc ctgcggactc cgtcgctggg ccgcgacggc
     2761 ggcgcccacg acaagggcgc gggccgcgcc gccgtctcgg acgagctgcg ccagtggtac
     2821 cagcgctcga gcgcctcgca caaggagcac agccgcctgt cgcacgccag ctccgcctcc
     2881 tcggacggcg gctcccagta cagcgcctcc tcccagagca ccttcgtggc gcacagcagg
     2941 gtcaccagga tgccccagat gtgcaaggcc acgtcagctg ccttacctca aagccagaga
     3001 agctcaacgc cgtccagtga agttggagcg acgccccccg gcagccctca ccacatccta
     3061 acctggcaga ccggttttgc tctcaggaaa actacacgtt tggatgtgaa ccaagtgcat
     3121 tctaattcag aaaccaaaag ggtactcacc agaaggacaa tctgtccttg cctaagtcct
     3181 gaatcaagtc ggacagacca accacaagga gggagcctga agtcagaagt ctccttcgga
     3241 tcccatggct gccaccactg ttcaaagaac aagttcaagt ttaaagatcc tgttggcttc
     3301 attcatcaag ttgcaaccca gttccttatg gaattagaaa ctatccttgt cttacaaacc
     3361 tagtccttac aagaacagaa atgcagctct agaagcaatt caaagcctac ctatcctttt
     3421 ttttaatcaa tccccaaaca tcccttcttc acctcaaaag gtttgcagac attgtaaaag
     3481 actggattta ggaaagtaaa gtccttcttg gaggaactcc cattcttttc ctgtgctttt
     3541 gagttgtgaa tattccacct ggtctcctcc aggaactctt acctaggcca gctcttagaa
     3601 acgcaaactt cggagagata attcttacca gaagaaaaaa agaaaagcaa ggctctttgg
     3661 agcttagggg aatgaaaaac ctttaagtgt cttctccaca ctgagcacgt aaccttcatt
     3721 gagtccagct tccagaaaca ggatttggat tctactgttc ttttacaaac tagcgggttc
     3781 tgcatggtcg caccggcctc gtggctgcgg gcagcacgga gcttgcgtgc tctctccatc
     3841 tctgcctcta cttcctgttc ctggcggtca catcctcggg aggaagtgga cagccctgta
     3901 gtgtgaaagc tgcttggccc tgctcgggca tttgcccatc tctgaccagt gacgggctag
     3961 aggactctca ctggcccccc ccccaccccc gggccacttg gccaccctca gtgagggtag
     4021 ggcagacacc ctggtggaag gcaccaccgg gacgacgcag agttagggag ggactgtccc
     4081 ccaatgaaca gcgtatgccc accgtggggt ccaaccacct tttgccacga aaagtctcac
     4141 actccctcag gcacgatggc acaggtcggt tttatcaggg tggagagagt ttgcagggtg
     4201 ggtaggatgg aatcagctac ttaccaccgg agggcagtga tagacgggca gggccagttc
     4261 cggaattagg gccttgatgt tactttgctt ctgaagccac cttgaagtgt attaacccca
     4321 gtatatattc caggggttcc aggcacagga ctctctttaa aggccacggt atgctcacag
     4381 aggccttggg ttttccagcg ttgatgggtt ttttaaaagc cagatgagaa accttcacga
     4441 aatccagaat gccttcatcc acttattcct agagaaatca gcgaatcaaa cagaaaaacg
     4501 gcgatgatgg cttattctcg gtcataaact ggttcacgag gtggtcctaa agacgctctt
     4561 gaaagctgct ttcctttgag tctcttcctg ccacccgtcc ccagccataa cggtagcgca
     4621 gggcatgggg agatcagcgg caggggagga aatcatcttg acatttatgg aaagtcctga
     4681 tgctgtttcc aaataggtat ttctaccccc aaaacgacat gtgctctggg gaggtcaaac
     4741 ttgaaaaccc agcttgaaca aacccacacc tactaactta gaggcacaga cccgtgtccc
     4801 tcacaggaat gctattccaa aaactgaagg ctgtggttga aggcctatag gtttcatccc
     4861 tttaggaatc agcacaaatg aacactcaga agttactagg agtagaagct caaaacaaag
     4921 gaagagcaca ggcggtaatc caggcccctc tgcagctgtt cctgcacagg gcccagaggt
     4981 cagccgtgcc cacgtcaggg gctgcgtgcg gcccgcaggg cagggagagg aaggtaggac
     5041 cccatctcct caggccgcat ggctgattaa ccagcgtctg ggcacctcct gggcaaactc
     5101 cagcccattc ctagattcag tgagataaag tgtgatcttt agccctgaaa gagctagttt
     5161 aggatcagtg gggaggggcc gttttcccta ataatgatgc ctagcaatga tcatgggcat
     5221 cagcatatcc acgtgactgc ttcttgatat gtaaagacca cagctgaccc ttgaacaaca
     5281 cagattggag ctgcacaggt ccacttatac tcaggttttt cccaacaaat acagtcggct
     5341 ggccctccga tccaccgatg ggaacccacc gatacgaagg gccaactgta ctgcaccagt
     5401 ttgtatcagg gacttgatca tcctcggact ttggtatcca gggggggctc ttggacccaa
     5461 ttccctgcag ataccaaggg acgactgtgc ccaacctgcg tcgtgacgca cagctgcaag
     5521 tctgtttttt acaaagtctt ttctatacac ttttctatat attttcaata cgttttttga
     5581 taatcacaca acaatacatg ttatttcaaa taaacagcag taagactcca ttcaaaatat
     5641 cacctcagtt tccctacagg gaaacctgcc atttcgcatg tgcttccagg acagaataaa
     5701 aatctggtgg acgctagtta cacctgggat ctcagggagg acaaaggaag caagtgttct
     5761 gagaaaaaaa agaatcctga ggactccagc cggaggggtt ctgggcctcg gctgcatggg
     5821 agagtcacgt ggggggatcc gaaagctccg gccactcaag cacagcccag accaattaaa
     5881 cctgcatctc cacggtgggt gttttggggg ttcccgggcg agtcccacat gcagccgagc
     5941 ctgaggacca ctgcattaag tgttagctcc gtttccctcc acacacgtgc aaggctcagg
     6001 tcccctgggt gtgaatgttc tgcagtctgc gcgcgcctgc tgtgcgctca gcactgtcgc
     6061 aggcctggtt ccttatgaac ggggaagacg gcccctatgg acacgtactt ctgaacgcag
     6121 actgccaagt gacattcccc cctaactgtc tcctctcgcc cttggattcc ctgcaggagc
     6181 tacaatgata gctgtttcct ggatccctcc ctctatccag aactagctga tgtccagtgg
     6241 tacgggcaag aaaaagccaa gcccgggacc ctcgtgtgag ccagccggcc tcaatctggc
     6301 cgcctcgacg ccattctgag atcacctcac tgcctctcat ttgccttacc cagacgcagt
     6361 gtcacctgca ccagcttcgg ccctcagcac ttttcttctc ctgtctccgc gtccccctca
     6421 ccctccaaaa acctgactgg ggagacattc tggaaggttc cggtcccact gtgtgtcccc
     6481 tggctccctt gcccagagag ccaggcacca atcctcaatg gcaccttggt ggctccccac
     6541 tgccgtgaca gccccctggc caggaaccat cagggaagct ggctggcctg gactcctgtg
     6601 gactagtggc attggtggaa accaggaaag gggacttaag tacagggtga tccagaaaga
     6661 ctgtgaaagc tggggcccac ctggaggccc cccaagcact cggtgaagac gatgccccgt
     6721 gggaatattc agcagacagc tgaagtactt cctgggagga gtgactgttg cgggagcagg
     6781 aagaacagaa acagaagctg gacacgtcag agatgcatcc acggatcaca gtcagttatg
     6841 ctgccaaaga ttttaaaaaa ttaaaaacta aaaacacaca aaaaattaag aggggccaag
     6901 aggaagacgt tctttctgca atgaaatctc ttttaaatcc tcaactgcta ccgcattcca
     6961 cacgtgaaag tcagccatct gtaacgtgtg cccctcaccc ctctccctta acattccacc
     7021 tccctctcca tcgagagcct gaaaactgac ccaatgtgat ggtcacatcg ggggacccct
     7081 ggctggcatt gctgacttgg atctccatga gtctggaccc ccaggagaac agacccacgg
     7141 ggagtagcgg agtgtccgct tagccccagc ctgcatgggg ggttcagccc aagacacaaa
     7201 gctgctttcc tttggggatt tgtaggaaac gtaaggtgat ggttgccaaa agtggttctc
     7261 tctcattaaa acaaccagta aaagtgtatc ctgttttttt ctca
//
LOCUS       XM_032620642            7380 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FERM domain containing 4A (FRMD4A),
            transcript variant X2, mRNA.
ACCESSION   XM_032620642
VERSION     XM_032620642.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7380
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7380
                     /gene="FRMD4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747943"
     CDS             170..3439
                     /gene="FRMD4A"
                     /codon_start=1
                     /product="FERM domain-containing protein 4A isoform X2"
                     /protein_id="XP_032476533.1"
                     /db_xref="GeneID:116747943"
                     /translation="MTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKE
                     YFGIAFTDETGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIEL
                     FFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDFSSNEVVRTDLKKLPALPTQALK
                     EHPSLAYCEDRVIEHYKKLNGQTRGQAIVNYMSIVESLPTYGVHYYAVKDKQGIPWWL
                     GLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRASVTRRTFGHSG
                     IAVHTWYACPALIKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKT
                     SKLASMGSKGKIISGSSGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLE
                     ELKRLCLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEEAELERL
                     EREFAIQSQITEAARRLASDPNVSKKLKKQRKTSYLNALKKLQEIESAINENRVKSGK
                     KPTQRASLIIEDGNIASEDSSLSDALVLEDEDSQVTSTLSPLQSPHKGLPPRPPSHNR
                     PPPPQSLEGLRQMHCHRNDYDKSPIKPKMWSESSLDEPYEKVKKRSSHSHSSSHKRFP
                     STGSCAEAGGGGSSLQTSPIRSLPPWNSQCSMPSTPDLRVRSPHYVHSTRSVDLSPTR
                     LHSLALHFRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSS
                     SEHYYPAQMNANYSTLAEDSPSKARARQRQRAAGALGAANSGSMPNLAARGGGHGHGV
                     YLHSQSQPSSQYRIKEYPLYVEGGATPVVVRSLESDQEGHYSVKAQFKTSNSYTAGGL
                     FRESWRGGDEGDAGRLTPSRSQILRTPSLGRDGGAHDKGAGRAAVSDELRQWYQRSSA
                     SHKEHSRLSHASSASSDGGSQYSASSQSTFVAHSRVTRMPQMCKATSAALPQSQRSST
                     PSSEVGATPPGSPHHILTWQTGFALRKTTRLDVNQVHSNSETKRVLTRRTICPCLSPE
                     SSRTDQPQGGSLKSEVSFGSHGCHHCSKNKFKFKDPVGFIHQVATQFLMELETILVLQ
                     T"
     misc_feature    176..442
                     /gene="FRMD4A"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); Region: FERM_F1_FRMD4B; cd17200"
                     /db_xref="CDD:340720"
     misc_feature    185..787
                     /gene="FRMD4A"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    773..1105
                     /gene="FRMD4A"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); Region:
                     FERM_C_FRMD4A_FRMD4B; cd13191"
                     /db_xref="CDD:270012"
     misc_feature    order(797..799,848..850,854..856,881..883)
                     /gene="FRMD4A"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    order(893..895,908..919,1046..1048,1058..1060,1067..1072)
                     /gene="FRMD4A"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1046..1081
                     /gene="FRMD4A"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1190..1597
                     /gene="FRMD4A"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     Region: CUPID; pfam11819"
                     /db_xref="CDD:463360"
ORIGIN      
        1 caaaagggag gcagcttgta aatttcctat tagaataggg agtgtgctta taaattcctc
       61 agggcttagt aatgagattt cgttgaagag aagaatgaat tggaagctcc ttgggtagat
      121 cttaacatct ggatgcatag ctacttcttt aaactgctga gccgataaga tgacggaagg
      181 ccgtcgatgt caagtacatc ttcttgatga ccggaagctg gaactcctag tacagcccaa
      241 gcttttggcc aaggagctgc ttgacctcgt ggcatctcac ttcaacctga aggagaagga
      301 atactttgga atcgccttca cagatgagac gggacactta aactggcttc aactagatcg
      361 aagagtcttg gaacacgact tccccaaaaa gtcgggacca gtggttttat acttttgtgt
      421 caggttctat atagagagca tctcatacct aaaggacaat gccaccatag agctcttctt
      481 cctgaacgcc aagtcctgta tctacaagga gctgattgat gttgacagtg aagtggtgtt
      541 tgaattagcc tcgtatattt tacaggaggc aaagggagac ttttctagca atgaagtggt
      601 gaggacggac ttgaagaaac taccagcact tcccacgcag gctctgaagg agcacccctc
      661 cctggcttac tgcgaggacc gggtcatcga gcactacaag aaactgaacg gccagaccag
      721 aggccaagcc attgtcaact acatgagcat cgtggagtct ctcccaacct acggggttca
      781 ctattacgca gtgaaggaca agcaggggat accgtggtgg ctgggactga gctacaaagg
      841 catcttccag tatgactacc acgataaagt caagcccagg aagatattcc agtggaggca
      901 gttggaaaac ctgtatttca gagagaagaa gttttctgtg gaagttcatg acccacgcag
      961 ggcttcagtg acgaggagga cgtttggaca cagcggcatc gcagtgcaca cgtggtacgc
     1021 gtgtccggca ctgatcaagt ccatctgggc tatggccatt agccaacacc agttctatct
     1081 ggacagaaag cagagtaagt cgaagatcca tgccgcccgc agcctgagcg aaatcgccat
     1141 cgacctgacg gagacgggga cgctgaagac gtcgaagctg gccagcatgg gcagcaaggg
     1201 caagatcatc agcggcagca gcggcagcct gctgtcctca ggttctcagg aatcagatag
     1261 ctcgcagtcg gccaagaaag acatgctggc agccttgaaa tccaggcagg aagctctgga
     1321 ggaaacgctt cgccagcggc tggaagagct gaagagactc tgcctccgag aagccgagct
     1381 gacgggaaaa ctgcccgtgg agtatcccct ggatccagga gaggaaccac ccattgttcg
     1441 aagaagaatc gggacagcct tcaaactgga cgagcagaaa atcctgccca aaggagagga
     1501 ggccgagctg gaacgcctgg agcgggagtt tgccattcag tcccagatta cggaggctgc
     1561 ccgccgcctg gccagtgacc ctaacgtcag caaaaaactg aagaagcaga ggaagacctc
     1621 ttacctgaat gcactgaaga agctgcagga gattgaaagc gcaatcaacg agaaccgcgt
     1681 caagtctggg aagaaaccca cccagcgggc ctcgctgatc atcgaagatg gaaatattgc
     1741 cagtgaagac agttccctgt cagatgccct agttctagaa gatgaagact ctcaggtcac
     1801 cagcacactg tcccccttac agtcccctca caaagggctc cctcctcggc caccgtcgca
     1861 caaccggccg ccccctccgc agtccctgga gggactcagg cagatgcact gtcaccgcaa
     1921 cgactatgac aagtcgccca taaagcccaa aatgtggagc gagtcctcat tagacgagcc
     1981 ttacgagaag gtcaagaagc gttcctccca cagtcactcc agtagccaca agcgcttccc
     2041 cagcacgggg agctgcgctg aagcaggagg gggaggcagc tccctgcaga ccagccccat
     2101 ccgcagcctc ccgccctgga actctcagtg cagcatgccg tccacacccg acctccgagt
     2161 ccggagtccc cactacgtgc attccacgag gtcggtggac ctcagcccca cgcggctgca
     2221 cagcctcgcc ctgcactttc ggcaccggag ctccagcttg gagtcccagg gcaagctcct
     2281 gggctcggag aacgacacgg ggagccccga cttctacacg ccacggactc gcagcagcaa
     2341 cggctcggac cccatggacg actgctcgtc gtgcaccagc cactcgagct cggagcacta
     2401 ctacccggcg cagatgaatg ccaactactc cacgctggcc gaggactcgc cgtccaaggc
     2461 gcgcgcgcgg cagcggcagc gggcggcggg cgcgctgggc gcggcgaact cgggcagcat
     2521 gcccaacctg gcggcgcgcg gcggcggcca cggccacggc gtctacctgc acagccagag
     2581 ccagcccagc tcgcagtacc gcatcaagga gtacccgctg tacgtggagg gcggcgccac
     2641 gcccgtggtg gtgcgcagcc tggagagcga ccaggagggc cactacagcg tcaaggcgca
     2701 gttcaagacc tccaactcgt acacggccgg cggcctgttc cgggagagct ggcgcggcgg
     2761 cgacgagggc gacgcgggcc gcctgacgcc gtcgcgctcg cagatcctgc ggactccgtc
     2821 gctgggccgc gacggcggcg cccacgacaa gggcgcgggc cgcgccgccg tctcggacga
     2881 gctgcgccag tggtaccagc gctcgagcgc ctcgcacaag gagcacagcc gcctgtcgca
     2941 cgccagctcc gcctcctcgg acggcggctc ccagtacagc gcctcctccc agagcacctt
     3001 cgtggcgcac agcagggtca ccaggatgcc ccagatgtgc aaggccacgt cagctgcctt
     3061 acctcaaagc cagagaagct caacgccgtc cagtgaagtt ggagcgacgc cccccggcag
     3121 ccctcaccac atcctaacct ggcagaccgg ttttgctctc aggaaaacta cacgtttgga
     3181 tgtgaaccaa gtgcattcta attcagaaac caaaagggta ctcaccagaa ggacaatctg
     3241 tccttgccta agtcctgaat caagtcggac agaccaacca caaggaggga gcctgaagtc
     3301 agaagtctcc ttcggatccc atggctgcca ccactgttca aagaacaagt tcaagtttaa
     3361 agatcctgtt ggcttcattc atcaagttgc aacccagttc cttatggaat tagaaactat
     3421 ccttgtctta caaacctagt ccttacaaga acagaaatgc agctctagaa gcaattcaaa
     3481 gcctacctat cctttttttt aatcaatccc caaacatccc ttcttcacct caaaaggttt
     3541 gcagacattg taaaagactg gatttaggaa agtaaagtcc ttcttggagg aactcccatt
     3601 cttttcctgt gcttttgagt tgtgaatatt ccacctggtc tcctccagga actcttacct
     3661 aggccagctc ttagaaacgc aaacttcgga gagataattc ttaccagaag aaaaaaagaa
     3721 aagcaaggct ctttggagct taggggaatg aaaaaccttt aagtgtcttc tccacactga
     3781 gcacgtaacc ttcattgagt ccagcttcca gaaacaggat ttggattcta ctgttctttt
     3841 acaaactagc gggttctgca tggtcgcacc ggcctcgtgg ctgcgggcag cacggagctt
     3901 gcgtgctctc tccatctctg cctctacttc ctgttcctgg cggtcacatc ctcgggagga
     3961 agtggacagc cctgtagtgt gaaagctgct tggccctgct cgggcatttg cccatctctg
     4021 accagtgacg ggctagagga ctctcactgg cccccccccc acccccgggc cacttggcca
     4081 ccctcagtga gggtagggca gacaccctgg tggaaggcac caccgggacg acgcagagtt
     4141 agggagggac tgtcccccaa tgaacagcgt atgcccaccg tggggtccaa ccaccttttg
     4201 ccacgaaaag tctcacactc cctcaggcac gatggcacag gtcggtttta tcagggtgga
     4261 gagagtttgc agggtgggta ggatggaatc agctacttac caccggaggg cagtgataga
     4321 cgggcagggc cagttccgga attagggcct tgatgttact ttgcttctga agccaccttg
     4381 aagtgtatta accccagtat atattccagg ggttccaggc acaggactct ctttaaaggc
     4441 cacggtatgc tcacagaggc cttgggtttt ccagcgttga tgggtttttt aaaagccaga
     4501 tgagaaacct tcacgaaatc cagaatgcct tcatccactt attcctagag aaatcagcga
     4561 atcaaacaga aaaacggcga tgatggctta ttctcggtca taaactggtt cacgaggtgg
     4621 tcctaaagac gctcttgaaa gctgctttcc tttgagtctc ttcctgccac ccgtccccag
     4681 ccataacggt agcgcagggc atggggagat cagcggcagg ggaggaaatc atcttgacat
     4741 ttatggaaag tcctgatgct gtttccaaat aggtatttct acccccaaaa cgacatgtgc
     4801 tctggggagg tcaaacttga aaacccagct tgaacaaacc cacacctact aacttagagg
     4861 cacagacccg tgtccctcac aggaatgcta ttccaaaaac tgaaggctgt ggttgaaggc
     4921 ctataggttt catcccttta ggaatcagca caaatgaaca ctcagaagtt actaggagta
     4981 gaagctcaaa acaaaggaag agcacaggcg gtaatccagg cccctctgca gctgttcctg
     5041 cacagggccc agaggtcagc cgtgcccacg tcaggggctg cgtgcggccc gcagggcagg
     5101 gagaggaagg taggacccca tctcctcagg ccgcatggct gattaaccag cgtctgggca
     5161 cctcctgggc aaactccagc ccattcctag attcagtgag ataaagtgtg atctttagcc
     5221 ctgaaagagc tagtttagga tcagtgggga ggggccgttt tccctaataa tgatgcctag
     5281 caatgatcat gggcatcagc atatccacgt gactgcttct tgatatgtaa agaccacagc
     5341 tgacccttga acaacacaga ttggagctgc acaggtccac ttatactcag gtttttccca
     5401 acaaatacag tcggctggcc ctccgatcca ccgatgggaa cccaccgata cgaagggcca
     5461 actgtactgc accagtttgt atcagggact tgatcatcct cggactttgg tatccagggg
     5521 gggctcttgg acccaattcc ctgcagatac caagggacga ctgtgcccaa cctgcgtcgt
     5581 gacgcacagc tgcaagtctg ttttttacaa agtcttttct atacactttt ctatatattt
     5641 tcaatacgtt ttttgataat cacacaacaa tacatgttat ttcaaataaa cagcagtaag
     5701 actccattca aaatatcacc tcagtttccc tacagggaaa cctgccattt cgcatgtgct
     5761 tccaggacag aataaaaatc tggtggacgc tagttacacc tgggatctca gggaggacaa
     5821 aggaagcaag tgttctgaga aaaaaaagaa tcctgaggac tccagccgga ggggttctgg
     5881 gcctcggctg catgggagag tcacgtgggg ggatccgaaa gctccggcca ctcaagcaca
     5941 gcccagacca attaaacctg catctccacg gtgggtgttt tgggggttcc cgggcgagtc
     6001 ccacatgcag ccgagcctga ggaccactgc attaagtgtt agctccgttt ccctccacac
     6061 acgtgcaagg ctcaggtccc ctgggtgtga atgttctgca gtctgcgcgc gcctgctgtg
     6121 cgctcagcac tgtcgcaggc ctggttcctt atgaacgggg aagacggccc ctatggacac
     6181 gtacttctga acgcagactg ccaagtgaca ttccccccta actgtctcct ctcgcccttg
     6241 gattccctgc aggagctaca atgatagctg tttcctggat ccctccctct atccagaact
     6301 agctgatgtc cagtggtacg ggcaagaaaa agccaagccc gggaccctcg tgtgagccag
     6361 ccggcctcaa tctggccgcc tcgacgccat tctgagatca cctcactgcc tctcatttgc
     6421 cttacccaga cgcagtgtca cctgcaccag cttcggccct cagcactttt cttctcctgt
     6481 ctccgcgtcc ccctcaccct ccaaaaacct gactggggag acattctgga aggttccggt
     6541 cccactgtgt gtcccctggc tcccttgccc agagagccag gcaccaatcc tcaatggcac
     6601 cttggtggct ccccactgcc gtgacagccc cctggccagg aaccatcagg gaagctggct
     6661 ggcctggact cctgtggact agtggcattg gtggaaacca ggaaagggga cttaagtaca
     6721 gggtgatcca gaaagactgt gaaagctggg gcccacctgg aggcccccca agcactcggt
     6781 gaagacgatg ccccgtggga atattcagca gacagctgaa gtacttcctg ggaggagtga
     6841 ctgttgcggg agcaggaaga acagaaacag aagctggaca cgtcagagat gcatccacgg
     6901 atcacagtca gttatgctgc caaagatttt aaaaaattaa aaactaaaaa cacacaaaaa
     6961 attaagaggg gccaagagga agacgttctt tctgcaatga aatctctttt aaatcctcaa
     7021 ctgctaccgc attccacacg tgaaagtcag ccatctgtaa cgtgtgcccc tcacccctct
     7081 cccttaacat tccacctccc tctccatcga gagcctgaaa actgacccaa tgtgatggtc
     7141 acatcggggg acccctggct ggcattgctg acttggatct ccatgagtct ggacccccag
     7201 gagaacagac ccacggggag tagcggagtg tccgcttagc cccagcctgc atggggggtt
     7261 cagcccaaga cacaaagctg ctttcctttg gggatttgta ggaaacgtaa ggtgatggtt
     7321 gccaaaagtg gttctctctc attaaaacaa ccagtaaaag tgtatcctgt ttttttctca
//
LOCUS       XM_032620649            7353 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FERM domain containing 4A (FRMD4A),
            transcript variant X3, mRNA.
ACCESSION   XM_032620649
VERSION     XM_032620649.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7353
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7353
                     /gene="FRMD4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747943"
     CDS             143..3412
                     /gene="FRMD4A"
                     /codon_start=1
                     /product="FERM domain-containing protein 4A isoform X2"
                     /protein_id="XP_032476540.1"
                     /db_xref="GeneID:116747943"
                     /translation="MTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKE
                     YFGIAFTDETGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIEL
                     FFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDFSSNEVVRTDLKKLPALPTQALK
                     EHPSLAYCEDRVIEHYKKLNGQTRGQAIVNYMSIVESLPTYGVHYYAVKDKQGIPWWL
                     GLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRASVTRRTFGHSG
                     IAVHTWYACPALIKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKT
                     SKLASMGSKGKIISGSSGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLE
                     ELKRLCLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEEAELERL
                     EREFAIQSQITEAARRLASDPNVSKKLKKQRKTSYLNALKKLQEIESAINENRVKSGK
                     KPTQRASLIIEDGNIASEDSSLSDALVLEDEDSQVTSTLSPLQSPHKGLPPRPPSHNR
                     PPPPQSLEGLRQMHCHRNDYDKSPIKPKMWSESSLDEPYEKVKKRSSHSHSSSHKRFP
                     STGSCAEAGGGGSSLQTSPIRSLPPWNSQCSMPSTPDLRVRSPHYVHSTRSVDLSPTR
                     LHSLALHFRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSS
                     SEHYYPAQMNANYSTLAEDSPSKARARQRQRAAGALGAANSGSMPNLAARGGGHGHGV
                     YLHSQSQPSSQYRIKEYPLYVEGGATPVVVRSLESDQEGHYSVKAQFKTSNSYTAGGL
                     FRESWRGGDEGDAGRLTPSRSQILRTPSLGRDGGAHDKGAGRAAVSDELRQWYQRSSA
                     SHKEHSRLSHASSASSDGGSQYSASSQSTFVAHSRVTRMPQMCKATSAALPQSQRSST
                     PSSEVGATPPGSPHHILTWQTGFALRKTTRLDVNQVHSNSETKRVLTRRTICPCLSPE
                     SSRTDQPQGGSLKSEVSFGSHGCHHCSKNKFKFKDPVGFIHQVATQFLMELETILVLQ
                     T"
     misc_feature    149..415
                     /gene="FRMD4A"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); Region: FERM_F1_FRMD4B; cd17200"
                     /db_xref="CDD:340720"
     misc_feature    158..760
                     /gene="FRMD4A"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    746..1078
                     /gene="FRMD4A"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); Region:
                     FERM_C_FRMD4A_FRMD4B; cd13191"
                     /db_xref="CDD:270012"
     misc_feature    order(770..772,821..823,827..829,854..856)
                     /gene="FRMD4A"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    order(866..868,881..892,1019..1021,1031..1033,1040..1045)
                     /gene="FRMD4A"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1019..1054
                     /gene="FRMD4A"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1163..1570
                     /gene="FRMD4A"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     Region: CUPID; pfam11819"
                     /db_xref="CDD:463360"
ORIGIN      
        1 cggaggcgga ggcgccgggc gcggatgccg ccggctaggc cccgggcctg cgcacccggg
       61 gcgcatggga cgcccgtttc ggcggatcgg ccgctgcaaa cctgaagttc ctcggctccc
      121 tgggaagcac cacgaataaa agatgacgga aggccgtcga tgtcaagtac atcttcttga
      181 tgaccggaag ctggaactcc tagtacagcc caagcttttg gccaaggagc tgcttgacct
      241 cgtggcatct cacttcaacc tgaaggagaa ggaatacttt ggaatcgcct tcacagatga
      301 gacgggacac ttaaactggc ttcaactaga tcgaagagtc ttggaacacg acttccccaa
      361 aaagtcggga ccagtggttt tatacttttg tgtcaggttc tatatagaga gcatctcata
      421 cctaaaggac aatgccacca tagagctctt cttcctgaac gccaagtcct gtatctacaa
      481 ggagctgatt gatgttgaca gtgaagtggt gtttgaatta gcctcgtata ttttacagga
      541 ggcaaaggga gacttttcta gcaatgaagt ggtgaggacg gacttgaaga aactaccagc
      601 acttcccacg caggctctga aggagcaccc ctccctggct tactgcgagg accgggtcat
      661 cgagcactac aagaaactga acggccagac cagaggccaa gccattgtca actacatgag
      721 catcgtggag tctctcccaa cctacggggt tcactattac gcagtgaagg acaagcaggg
      781 gataccgtgg tggctgggac tgagctacaa aggcatcttc cagtatgact accacgataa
      841 agtcaagccc aggaagatat tccagtggag gcagttggaa aacctgtatt tcagagagaa
      901 gaagttttct gtggaagttc atgacccacg cagggcttca gtgacgagga ggacgtttgg
      961 acacagcggc atcgcagtgc acacgtggta cgcgtgtccg gcactgatca agtccatctg
     1021 ggctatggcc attagccaac accagttcta tctggacaga aagcagagta agtcgaagat
     1081 ccatgccgcc cgcagcctga gcgaaatcgc catcgacctg acggagacgg ggacgctgaa
     1141 gacgtcgaag ctggccagca tgggcagcaa gggcaagatc atcagcggca gcagcggcag
     1201 cctgctgtcc tcaggttctc aggaatcaga tagctcgcag tcggccaaga aagacatgct
     1261 ggcagccttg aaatccaggc aggaagctct ggaggaaacg cttcgccagc ggctggaaga
     1321 gctgaagaga ctctgcctcc gagaagccga gctgacggga aaactgcccg tggagtatcc
     1381 cctggatcca ggagaggaac cacccattgt tcgaagaaga atcgggacag ccttcaaact
     1441 ggacgagcag aaaatcctgc ccaaaggaga ggaggccgag ctggaacgcc tggagcggga
     1501 gtttgccatt cagtcccaga ttacggaggc tgcccgccgc ctggccagtg accctaacgt
     1561 cagcaaaaaa ctgaagaagc agaggaagac ctcttacctg aatgcactga agaagctgca
     1621 ggagattgaa agcgcaatca acgagaaccg cgtcaagtct gggaagaaac ccacccagcg
     1681 ggcctcgctg atcatcgaag atggaaatat tgccagtgaa gacagttccc tgtcagatgc
     1741 cctagttcta gaagatgaag actctcaggt caccagcaca ctgtccccct tacagtcccc
     1801 tcacaaaggg ctccctcctc ggccaccgtc gcacaaccgg ccgccccctc cgcagtccct
     1861 ggagggactc aggcagatgc actgtcaccg caacgactat gacaagtcgc ccataaagcc
     1921 caaaatgtgg agcgagtcct cattagacga gccttacgag aaggtcaaga agcgttcctc
     1981 ccacagtcac tccagtagcc acaagcgctt ccccagcacg gggagctgcg ctgaagcagg
     2041 agggggaggc agctccctgc agaccagccc catccgcagc ctcccgccct ggaactctca
     2101 gtgcagcatg ccgtccacac ccgacctccg agtccggagt ccccactacg tgcattccac
     2161 gaggtcggtg gacctcagcc ccacgcggct gcacagcctc gccctgcact ttcggcaccg
     2221 gagctccagc ttggagtccc agggcaagct cctgggctcg gagaacgaca cggggagccc
     2281 cgacttctac acgccacgga ctcgcagcag caacggctcg gaccccatgg acgactgctc
     2341 gtcgtgcacc agccactcga gctcggagca ctactacccg gcgcagatga atgccaacta
     2401 ctccacgctg gccgaggact cgccgtccaa ggcgcgcgcg cggcagcggc agcgggcggc
     2461 gggcgcgctg ggcgcggcga actcgggcag catgcccaac ctggcggcgc gcggcggcgg
     2521 ccacggccac ggcgtctacc tgcacagcca gagccagccc agctcgcagt accgcatcaa
     2581 ggagtacccg ctgtacgtgg agggcggcgc cacgcccgtg gtggtgcgca gcctggagag
     2641 cgaccaggag ggccactaca gcgtcaaggc gcagttcaag acctccaact cgtacacggc
     2701 cggcggcctg ttccgggaga gctggcgcgg cggcgacgag ggcgacgcgg gccgcctgac
     2761 gccgtcgcgc tcgcagatcc tgcggactcc gtcgctgggc cgcgacggcg gcgcccacga
     2821 caagggcgcg ggccgcgccg ccgtctcgga cgagctgcgc cagtggtacc agcgctcgag
     2881 cgcctcgcac aaggagcaca gccgcctgtc gcacgccagc tccgcctcct cggacggcgg
     2941 ctcccagtac agcgcctcct cccagagcac cttcgtggcg cacagcaggg tcaccaggat
     3001 gccccagatg tgcaaggcca cgtcagctgc cttacctcaa agccagagaa gctcaacgcc
     3061 gtccagtgaa gttggagcga cgccccccgg cagccctcac cacatcctaa cctggcagac
     3121 cggttttgct ctcaggaaaa ctacacgttt ggatgtgaac caagtgcatt ctaattcaga
     3181 aaccaaaagg gtactcacca gaaggacaat ctgtccttgc ctaagtcctg aatcaagtcg
     3241 gacagaccaa ccacaaggag ggagcctgaa gtcagaagtc tccttcggat cccatggctg
     3301 ccaccactgt tcaaagaaca agttcaagtt taaagatcct gttggcttca ttcatcaagt
     3361 tgcaacccag ttccttatgg aattagaaac tatccttgtc ttacaaacct agtccttaca
     3421 agaacagaaa tgcagctcta gaagcaattc aaagcctacc tatccttttt tttaatcaat
     3481 ccccaaacat cccttcttca cctcaaaagg tttgcagaca ttgtaaaaga ctggatttag
     3541 gaaagtaaag tccttcttgg aggaactccc attcttttcc tgtgcttttg agttgtgaat
     3601 attccacctg gtctcctcca ggaactctta cctaggccag ctcttagaaa cgcaaacttc
     3661 ggagagataa ttcttaccag aagaaaaaaa gaaaagcaag gctctttgga gcttagggga
     3721 atgaaaaacc tttaagtgtc ttctccacac tgagcacgta accttcattg agtccagctt
     3781 ccagaaacag gatttggatt ctactgttct tttacaaact agcgggttct gcatggtcgc
     3841 accggcctcg tggctgcggg cagcacggag cttgcgtgct ctctccatct ctgcctctac
     3901 ttcctgttcc tggcggtcac atcctcggga ggaagtggac agccctgtag tgtgaaagct
     3961 gcttggccct gctcgggcat ttgcccatct ctgaccagtg acgggctaga ggactctcac
     4021 tggccccccc cccacccccg ggccacttgg ccaccctcag tgagggtagg gcagacaccc
     4081 tggtggaagg caccaccggg acgacgcaga gttagggagg gactgtcccc caatgaacag
     4141 cgtatgccca ccgtggggtc caaccacctt ttgccacgaa aagtctcaca ctccctcagg
     4201 cacgatggca caggtcggtt ttatcagggt ggagagagtt tgcagggtgg gtaggatgga
     4261 atcagctact taccaccgga gggcagtgat agacgggcag ggccagttcc ggaattaggg
     4321 ccttgatgtt actttgcttc tgaagccacc ttgaagtgta ttaaccccag tatatattcc
     4381 aggggttcca ggcacaggac tctctttaaa ggccacggta tgctcacaga ggccttgggt
     4441 tttccagcgt tgatgggttt tttaaaagcc agatgagaaa ccttcacgaa atccagaatg
     4501 ccttcatcca cttattccta gagaaatcag cgaatcaaac agaaaaacgg cgatgatggc
     4561 ttattctcgg tcataaactg gttcacgagg tggtcctaaa gacgctcttg aaagctgctt
     4621 tcctttgagt ctcttcctgc cacccgtccc cagccataac ggtagcgcag ggcatgggga
     4681 gatcagcggc aggggaggaa atcatcttga catttatgga aagtcctgat gctgtttcca
     4741 aataggtatt tctaccccca aaacgacatg tgctctgggg aggtcaaact tgaaaaccca
     4801 gcttgaacaa acccacacct actaacttag aggcacagac ccgtgtccct cacaggaatg
     4861 ctattccaaa aactgaaggc tgtggttgaa ggcctatagg tttcatccct ttaggaatca
     4921 gcacaaatga acactcagaa gttactagga gtagaagctc aaaacaaagg aagagcacag
     4981 gcggtaatcc aggcccctct gcagctgttc ctgcacaggg cccagaggtc agccgtgccc
     5041 acgtcagggg ctgcgtgcgg cccgcagggc agggagagga aggtaggacc ccatctcctc
     5101 aggccgcatg gctgattaac cagcgtctgg gcacctcctg ggcaaactcc agcccattcc
     5161 tagattcagt gagataaagt gtgatcttta gccctgaaag agctagttta ggatcagtgg
     5221 ggaggggccg ttttccctaa taatgatgcc tagcaatgat catgggcatc agcatatcca
     5281 cgtgactgct tcttgatatg taaagaccac agctgaccct tgaacaacac agattggagc
     5341 tgcacaggtc cacttatact caggtttttc ccaacaaata cagtcggctg gccctccgat
     5401 ccaccgatgg gaacccaccg atacgaaggg ccaactgtac tgcaccagtt tgtatcaggg
     5461 acttgatcat cctcggactt tggtatccag ggggggctct tggacccaat tccctgcaga
     5521 taccaaggga cgactgtgcc caacctgcgt cgtgacgcac agctgcaagt ctgtttttta
     5581 caaagtcttt tctatacact tttctatata ttttcaatac gttttttgat aatcacacaa
     5641 caatacatgt tatttcaaat aaacagcagt aagactccat tcaaaatatc acctcagttt
     5701 ccctacaggg aaacctgcca tttcgcatgt gcttccagga cagaataaaa atctggtgga
     5761 cgctagttac acctgggatc tcagggagga caaaggaagc aagtgttctg agaaaaaaaa
     5821 gaatcctgag gactccagcc ggaggggttc tgggcctcgg ctgcatggga gagtcacgtg
     5881 gggggatccg aaagctccgg ccactcaagc acagcccaga ccaattaaac ctgcatctcc
     5941 acggtgggtg ttttgggggt tcccgggcga gtcccacatg cagccgagcc tgaggaccac
     6001 tgcattaagt gttagctccg tttccctcca cacacgtgca aggctcaggt cccctgggtg
     6061 tgaatgttct gcagtctgcg cgcgcctgct gtgcgctcag cactgtcgca ggcctggttc
     6121 cttatgaacg gggaagacgg cccctatgga cacgtacttc tgaacgcaga ctgccaagtg
     6181 acattccccc ctaactgtct cctctcgccc ttggattccc tgcaggagct acaatgatag
     6241 ctgtttcctg gatccctccc tctatccaga actagctgat gtccagtggt acgggcaaga
     6301 aaaagccaag cccgggaccc tcgtgtgagc cagccggcct caatctggcc gcctcgacgc
     6361 cattctgaga tcacctcact gcctctcatt tgccttaccc agacgcagtg tcacctgcac
     6421 cagcttcggc cctcagcact tttcttctcc tgtctccgcg tccccctcac cctccaaaaa
     6481 cctgactggg gagacattct ggaaggttcc ggtcccactg tgtgtcccct ggctcccttg
     6541 cccagagagc caggcaccaa tcctcaatgg caccttggtg gctccccact gccgtgacag
     6601 ccccctggcc aggaaccatc agggaagctg gctggcctgg actcctgtgg actagtggca
     6661 ttggtggaaa ccaggaaagg ggacttaagt acagggtgat ccagaaagac tgtgaaagct
     6721 ggggcccacc tggaggcccc ccaagcactc ggtgaagacg atgccccgtg ggaatattca
     6781 gcagacagct gaagtacttc ctgggaggag tgactgttgc gggagcagga agaacagaaa
     6841 cagaagctgg acacgtcaga gatgcatcca cggatcacag tcagttatgc tgccaaagat
     6901 tttaaaaaat taaaaactaa aaacacacaa aaaattaaga ggggccaaga ggaagacgtt
     6961 ctttctgcaa tgaaatctct tttaaatcct caactgctac cgcattccac acgtgaaagt
     7021 cagccatctg taacgtgtgc ccctcacccc tctcccttaa cattccacct ccctctccat
     7081 cgagagcctg aaaactgacc caatgtgatg gtcacatcgg gggacccctg gctggcattg
     7141 ctgacttgga tctccatgag tctggacccc caggagaaca gacccacggg gagtagcgga
     7201 gtgtccgctt agccccagcc tgcatggggg gttcagccca agacacaaag ctgctttcct
     7261 ttggggattt gtaggaaacg taaggtgatg gttgccaaaa gtggttctct ctcattaaaa
     7321 caaccagtaa aagtgtatcc tgtttttttc tca
//
LOCUS       XM_032620655            7334 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FERM domain containing 4A (FRMD4A),
            transcript variant X4, mRNA.
ACCESSION   XM_032620655
VERSION     XM_032620655.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7334
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7334
                     /gene="FRMD4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747943"
     CDS             124..3393
                     /gene="FRMD4A"
                     /codon_start=1
                     /product="FERM domain-containing protein 4A isoform X2"
                     /protein_id="XP_032476546.1"
                     /db_xref="GeneID:116747943"
                     /translation="MTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKE
                     YFGIAFTDETGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIEL
                     FFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDFSSNEVVRTDLKKLPALPTQALK
                     EHPSLAYCEDRVIEHYKKLNGQTRGQAIVNYMSIVESLPTYGVHYYAVKDKQGIPWWL
                     GLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRASVTRRTFGHSG
                     IAVHTWYACPALIKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKT
                     SKLASMGSKGKIISGSSGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLE
                     ELKRLCLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEEAELERL
                     EREFAIQSQITEAARRLASDPNVSKKLKKQRKTSYLNALKKLQEIESAINENRVKSGK
                     KPTQRASLIIEDGNIASEDSSLSDALVLEDEDSQVTSTLSPLQSPHKGLPPRPPSHNR
                     PPPPQSLEGLRQMHCHRNDYDKSPIKPKMWSESSLDEPYEKVKKRSSHSHSSSHKRFP
                     STGSCAEAGGGGSSLQTSPIRSLPPWNSQCSMPSTPDLRVRSPHYVHSTRSVDLSPTR
                     LHSLALHFRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSS
                     SEHYYPAQMNANYSTLAEDSPSKARARQRQRAAGALGAANSGSMPNLAARGGGHGHGV
                     YLHSQSQPSSQYRIKEYPLYVEGGATPVVVRSLESDQEGHYSVKAQFKTSNSYTAGGL
                     FRESWRGGDEGDAGRLTPSRSQILRTPSLGRDGGAHDKGAGRAAVSDELRQWYQRSSA
                     SHKEHSRLSHASSASSDGGSQYSASSQSTFVAHSRVTRMPQMCKATSAALPQSQRSST
                     PSSEVGATPPGSPHHILTWQTGFALRKTTRLDVNQVHSNSETKRVLTRRTICPCLSPE
                     SSRTDQPQGGSLKSEVSFGSHGCHHCSKNKFKFKDPVGFIHQVATQFLMELETILVLQ
                     T"
     misc_feature    130..396
                     /gene="FRMD4A"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); Region: FERM_F1_FRMD4B; cd17200"
                     /db_xref="CDD:340720"
     misc_feature    139..741
                     /gene="FRMD4A"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    727..1059
                     /gene="FRMD4A"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); Region:
                     FERM_C_FRMD4A_FRMD4B; cd13191"
                     /db_xref="CDD:270012"
     misc_feature    order(751..753,802..804,808..810,835..837)
                     /gene="FRMD4A"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    order(847..849,862..873,1000..1002,1012..1014,1021..1026)
                     /gene="FRMD4A"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1000..1035
                     /gene="FRMD4A"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1144..1551
                     /gene="FRMD4A"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     Region: CUPID; pfam11819"
                     /db_xref="CDD:463360"
ORIGIN      
        1 tagccccacg actgggttat ctcacaggaa cttccatttc caaagagttg aggggacatt
       61 aatgcaagaa aactggacta gatcgaggga taagagctgc accttccgcc aagttcagcc
      121 aagatgacgg aaggccgtcg atgtcaagta catcttcttg atgaccggaa gctggaactc
      181 ctagtacagc ccaagctttt ggccaaggag ctgcttgacc tcgtggcatc tcacttcaac
      241 ctgaaggaga aggaatactt tggaatcgcc ttcacagatg agacgggaca cttaaactgg
      301 cttcaactag atcgaagagt cttggaacac gacttcccca aaaagtcggg accagtggtt
      361 ttatactttt gtgtcaggtt ctatatagag agcatctcat acctaaagga caatgccacc
      421 atagagctct tcttcctgaa cgccaagtcc tgtatctaca aggagctgat tgatgttgac
      481 agtgaagtgg tgtttgaatt agcctcgtat attttacagg aggcaaaggg agacttttct
      541 agcaatgaag tggtgaggac ggacttgaag aaactaccag cacttcccac gcaggctctg
      601 aaggagcacc cctccctggc ttactgcgag gaccgggtca tcgagcacta caagaaactg
      661 aacggccaga ccagaggcca agccattgtc aactacatga gcatcgtgga gtctctccca
      721 acctacgggg ttcactatta cgcagtgaag gacaagcagg ggataccgtg gtggctggga
      781 ctgagctaca aaggcatctt ccagtatgac taccacgata aagtcaagcc caggaagata
      841 ttccagtgga ggcagttgga aaacctgtat ttcagagaga agaagttttc tgtggaagtt
      901 catgacccac gcagggcttc agtgacgagg aggacgtttg gacacagcgg catcgcagtg
      961 cacacgtggt acgcgtgtcc ggcactgatc aagtccatct gggctatggc cattagccaa
     1021 caccagttct atctggacag aaagcagagt aagtcgaaga tccatgccgc ccgcagcctg
     1081 agcgaaatcg ccatcgacct gacggagacg gggacgctga agacgtcgaa gctggccagc
     1141 atgggcagca agggcaagat catcagcggc agcagcggca gcctgctgtc ctcaggttct
     1201 caggaatcag atagctcgca gtcggccaag aaagacatgc tggcagcctt gaaatccagg
     1261 caggaagctc tggaggaaac gcttcgccag cggctggaag agctgaagag actctgcctc
     1321 cgagaagccg agctgacggg aaaactgccc gtggagtatc ccctggatcc aggagaggaa
     1381 ccacccattg ttcgaagaag aatcgggaca gccttcaaac tggacgagca gaaaatcctg
     1441 cccaaaggag aggaggccga gctggaacgc ctggagcggg agtttgccat tcagtcccag
     1501 attacggagg ctgcccgccg cctggccagt gaccctaacg tcagcaaaaa actgaagaag
     1561 cagaggaaga cctcttacct gaatgcactg aagaagctgc aggagattga aagcgcaatc
     1621 aacgagaacc gcgtcaagtc tgggaagaaa cccacccagc gggcctcgct gatcatcgaa
     1681 gatggaaata ttgccagtga agacagttcc ctgtcagatg ccctagttct agaagatgaa
     1741 gactctcagg tcaccagcac actgtccccc ttacagtccc ctcacaaagg gctccctcct
     1801 cggccaccgt cgcacaaccg gccgccccct ccgcagtccc tggagggact caggcagatg
     1861 cactgtcacc gcaacgacta tgacaagtcg cccataaagc ccaaaatgtg gagcgagtcc
     1921 tcattagacg agccttacga gaaggtcaag aagcgttcct cccacagtca ctccagtagc
     1981 cacaagcgct tccccagcac ggggagctgc gctgaagcag gagggggagg cagctccctg
     2041 cagaccagcc ccatccgcag cctcccgccc tggaactctc agtgcagcat gccgtccaca
     2101 cccgacctcc gagtccggag tccccactac gtgcattcca cgaggtcggt ggacctcagc
     2161 cccacgcggc tgcacagcct cgccctgcac tttcggcacc ggagctccag cttggagtcc
     2221 cagggcaagc tcctgggctc ggagaacgac acggggagcc ccgacttcta cacgccacgg
     2281 actcgcagca gcaacggctc ggaccccatg gacgactgct cgtcgtgcac cagccactcg
     2341 agctcggagc actactaccc ggcgcagatg aatgccaact actccacgct ggccgaggac
     2401 tcgccgtcca aggcgcgcgc gcggcagcgg cagcgggcgg cgggcgcgct gggcgcggcg
     2461 aactcgggca gcatgcccaa cctggcggcg cgcggcggcg gccacggcca cggcgtctac
     2521 ctgcacagcc agagccagcc cagctcgcag taccgcatca aggagtaccc gctgtacgtg
     2581 gagggcggcg ccacgcccgt ggtggtgcgc agcctggaga gcgaccagga gggccactac
     2641 agcgtcaagg cgcagttcaa gacctccaac tcgtacacgg ccggcggcct gttccgggag
     2701 agctggcgcg gcggcgacga gggcgacgcg ggccgcctga cgccgtcgcg ctcgcagatc
     2761 ctgcggactc cgtcgctggg ccgcgacggc ggcgcccacg acaagggcgc gggccgcgcc
     2821 gccgtctcgg acgagctgcg ccagtggtac cagcgctcga gcgcctcgca caaggagcac
     2881 agccgcctgt cgcacgccag ctccgcctcc tcggacggcg gctcccagta cagcgcctcc
     2941 tcccagagca ccttcgtggc gcacagcagg gtcaccagga tgccccagat gtgcaaggcc
     3001 acgtcagctg ccttacctca aagccagaga agctcaacgc cgtccagtga agttggagcg
     3061 acgccccccg gcagccctca ccacatccta acctggcaga ccggttttgc tctcaggaaa
     3121 actacacgtt tggatgtgaa ccaagtgcat tctaattcag aaaccaaaag ggtactcacc
     3181 agaaggacaa tctgtccttg cctaagtcct gaatcaagtc ggacagacca accacaagga
     3241 gggagcctga agtcagaagt ctccttcgga tcccatggct gccaccactg ttcaaagaac
     3301 aagttcaagt ttaaagatcc tgttggcttc attcatcaag ttgcaaccca gttccttatg
     3361 gaattagaaa ctatccttgt cttacaaacc tagtccttac aagaacagaa atgcagctct
     3421 agaagcaatt caaagcctac ctatcctttt ttttaatcaa tccccaaaca tcccttcttc
     3481 acctcaaaag gtttgcagac attgtaaaag actggattta ggaaagtaaa gtccttcttg
     3541 gaggaactcc cattcttttc ctgtgctttt gagttgtgaa tattccacct ggtctcctcc
     3601 aggaactctt acctaggcca gctcttagaa acgcaaactt cggagagata attcttacca
     3661 gaagaaaaaa agaaaagcaa ggctctttgg agcttagggg aatgaaaaac ctttaagtgt
     3721 cttctccaca ctgagcacgt aaccttcatt gagtccagct tccagaaaca ggatttggat
     3781 tctactgttc ttttacaaac tagcgggttc tgcatggtcg caccggcctc gtggctgcgg
     3841 gcagcacgga gcttgcgtgc tctctccatc tctgcctcta cttcctgttc ctggcggtca
     3901 catcctcggg aggaagtgga cagccctgta gtgtgaaagc tgcttggccc tgctcgggca
     3961 tttgcccatc tctgaccagt gacgggctag aggactctca ctggcccccc ccccaccccc
     4021 gggccacttg gccaccctca gtgagggtag ggcagacacc ctggtggaag gcaccaccgg
     4081 gacgacgcag agttagggag ggactgtccc ccaatgaaca gcgtatgccc accgtggggt
     4141 ccaaccacct tttgccacga aaagtctcac actccctcag gcacgatggc acaggtcggt
     4201 tttatcaggg tggagagagt ttgcagggtg ggtaggatgg aatcagctac ttaccaccgg
     4261 agggcagtga tagacgggca gggccagttc cggaattagg gccttgatgt tactttgctt
     4321 ctgaagccac cttgaagtgt attaacccca gtatatattc caggggttcc aggcacagga
     4381 ctctctttaa aggccacggt atgctcacag aggccttggg ttttccagcg ttgatgggtt
     4441 ttttaaaagc cagatgagaa accttcacga aatccagaat gccttcatcc acttattcct
     4501 agagaaatca gcgaatcaaa cagaaaaacg gcgatgatgg cttattctcg gtcataaact
     4561 ggttcacgag gtggtcctaa agacgctctt gaaagctgct ttcctttgag tctcttcctg
     4621 ccacccgtcc ccagccataa cggtagcgca gggcatgggg agatcagcgg caggggagga
     4681 aatcatcttg acatttatgg aaagtcctga tgctgtttcc aaataggtat ttctaccccc
     4741 aaaacgacat gtgctctggg gaggtcaaac ttgaaaaccc agcttgaaca aacccacacc
     4801 tactaactta gaggcacaga cccgtgtccc tcacaggaat gctattccaa aaactgaagg
     4861 ctgtggttga aggcctatag gtttcatccc tttaggaatc agcacaaatg aacactcaga
     4921 agttactagg agtagaagct caaaacaaag gaagagcaca ggcggtaatc caggcccctc
     4981 tgcagctgtt cctgcacagg gcccagaggt cagccgtgcc cacgtcaggg gctgcgtgcg
     5041 gcccgcaggg cagggagagg aaggtaggac cccatctcct caggccgcat ggctgattaa
     5101 ccagcgtctg ggcacctcct gggcaaactc cagcccattc ctagattcag tgagataaag
     5161 tgtgatcttt agccctgaaa gagctagttt aggatcagtg gggaggggcc gttttcccta
     5221 ataatgatgc ctagcaatga tcatgggcat cagcatatcc acgtgactgc ttcttgatat
     5281 gtaaagacca cagctgaccc ttgaacaaca cagattggag ctgcacaggt ccacttatac
     5341 tcaggttttt cccaacaaat acagtcggct ggccctccga tccaccgatg ggaacccacc
     5401 gatacgaagg gccaactgta ctgcaccagt ttgtatcagg gacttgatca tcctcggact
     5461 ttggtatcca gggggggctc ttggacccaa ttccctgcag ataccaaggg acgactgtgc
     5521 ccaacctgcg tcgtgacgca cagctgcaag tctgtttttt acaaagtctt ttctatacac
     5581 ttttctatat attttcaata cgttttttga taatcacaca acaatacatg ttatttcaaa
     5641 taaacagcag taagactcca ttcaaaatat cacctcagtt tccctacagg gaaacctgcc
     5701 atttcgcatg tgcttccagg acagaataaa aatctggtgg acgctagtta cacctgggat
     5761 ctcagggagg acaaaggaag caagtgttct gagaaaaaaa agaatcctga ggactccagc
     5821 cggaggggtt ctgggcctcg gctgcatggg agagtcacgt ggggggatcc gaaagctccg
     5881 gccactcaag cacagcccag accaattaaa cctgcatctc cacggtgggt gttttggggg
     5941 ttcccgggcg agtcccacat gcagccgagc ctgaggacca ctgcattaag tgttagctcc
     6001 gtttccctcc acacacgtgc aaggctcagg tcccctgggt gtgaatgttc tgcagtctgc
     6061 gcgcgcctgc tgtgcgctca gcactgtcgc aggcctggtt ccttatgaac ggggaagacg
     6121 gcccctatgg acacgtactt ctgaacgcag actgccaagt gacattcccc cctaactgtc
     6181 tcctctcgcc cttggattcc ctgcaggagc tacaatgata gctgtttcct ggatccctcc
     6241 ctctatccag aactagctga tgtccagtgg tacgggcaag aaaaagccaa gcccgggacc
     6301 ctcgtgtgag ccagccggcc tcaatctggc cgcctcgacg ccattctgag atcacctcac
     6361 tgcctctcat ttgccttacc cagacgcagt gtcacctgca ccagcttcgg ccctcagcac
     6421 ttttcttctc ctgtctccgc gtccccctca ccctccaaaa acctgactgg ggagacattc
     6481 tggaaggttc cggtcccact gtgtgtcccc tggctccctt gcccagagag ccaggcacca
     6541 atcctcaatg gcaccttggt ggctccccac tgccgtgaca gccccctggc caggaaccat
     6601 cagggaagct ggctggcctg gactcctgtg gactagtggc attggtggaa accaggaaag
     6661 gggacttaag tacagggtga tccagaaaga ctgtgaaagc tggggcccac ctggaggccc
     6721 cccaagcact cggtgaagac gatgccccgt gggaatattc agcagacagc tgaagtactt
     6781 cctgggagga gtgactgttg cgggagcagg aagaacagaa acagaagctg gacacgtcag
     6841 agatgcatcc acggatcaca gtcagttatg ctgccaaaga ttttaaaaaa ttaaaaacta
     6901 aaaacacaca aaaaattaag aggggccaag aggaagacgt tctttctgca atgaaatctc
     6961 ttttaaatcc tcaactgcta ccgcattcca cacgtgaaag tcagccatct gtaacgtgtg
     7021 cccctcaccc ctctccctta acattccacc tccctctcca tcgagagcct gaaaactgac
     7081 ccaatgtgat ggtcacatcg ggggacccct ggctggcatt gctgacttgg atctccatga
     7141 gtctggaccc ccaggagaac agacccacgg ggagtagcgg agtgtccgct tagccccagc
     7201 ctgcatgggg ggttcagccc aagacacaaa gctgctttcc tttggggatt tgtaggaaac
     7261 gtaaggtgat ggttgccaaa agtggttctc tctcattaaa acaaccagta aaagtgtatc
     7321 ctgttttttt ctca
//
LOCUS       XM_032620661            7308 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FERM domain containing 4A (FRMD4A),
            transcript variant X5, mRNA.
ACCESSION   XM_032620661
VERSION     XM_032620661.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7308
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7308
                     /gene="FRMD4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747943"
     CDS             98..3367
                     /gene="FRMD4A"
                     /codon_start=1
                     /product="FERM domain-containing protein 4A isoform X2"
                     /protein_id="XP_032476552.1"
                     /db_xref="GeneID:116747943"
                     /translation="MTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKE
                     YFGIAFTDETGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIEL
                     FFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDFSSNEVVRTDLKKLPALPTQALK
                     EHPSLAYCEDRVIEHYKKLNGQTRGQAIVNYMSIVESLPTYGVHYYAVKDKQGIPWWL
                     GLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRASVTRRTFGHSG
                     IAVHTWYACPALIKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKT
                     SKLASMGSKGKIISGSSGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLE
                     ELKRLCLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEEAELERL
                     EREFAIQSQITEAARRLASDPNVSKKLKKQRKTSYLNALKKLQEIESAINENRVKSGK
                     KPTQRASLIIEDGNIASEDSSLSDALVLEDEDSQVTSTLSPLQSPHKGLPPRPPSHNR
                     PPPPQSLEGLRQMHCHRNDYDKSPIKPKMWSESSLDEPYEKVKKRSSHSHSSSHKRFP
                     STGSCAEAGGGGSSLQTSPIRSLPPWNSQCSMPSTPDLRVRSPHYVHSTRSVDLSPTR
                     LHSLALHFRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSS
                     SEHYYPAQMNANYSTLAEDSPSKARARQRQRAAGALGAANSGSMPNLAARGGGHGHGV
                     YLHSQSQPSSQYRIKEYPLYVEGGATPVVVRSLESDQEGHYSVKAQFKTSNSYTAGGL
                     FRESWRGGDEGDAGRLTPSRSQILRTPSLGRDGGAHDKGAGRAAVSDELRQWYQRSSA
                     SHKEHSRLSHASSASSDGGSQYSASSQSTFVAHSRVTRMPQMCKATSAALPQSQRSST
                     PSSEVGATPPGSPHHILTWQTGFALRKTTRLDVNQVHSNSETKRVLTRRTICPCLSPE
                     SSRTDQPQGGSLKSEVSFGSHGCHHCSKNKFKFKDPVGFIHQVATQFLMELETILVLQ
                     T"
     misc_feature    104..370
                     /gene="FRMD4A"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); Region: FERM_F1_FRMD4B; cd17200"
                     /db_xref="CDD:340720"
     misc_feature    113..715
                     /gene="FRMD4A"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    701..1033
                     /gene="FRMD4A"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); Region:
                     FERM_C_FRMD4A_FRMD4B; cd13191"
                     /db_xref="CDD:270012"
     misc_feature    order(725..727,776..778,782..784,809..811)
                     /gene="FRMD4A"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    order(821..823,836..847,974..976,986..988,995..1000)
                     /gene="FRMD4A"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    974..1009
                     /gene="FRMD4A"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1118..1525
                     /gene="FRMD4A"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     Region: CUPID; pfam11819"
                     /db_xref="CDD:463360"
ORIGIN      
        1 cccagctgta tttagacacc tggtcaggct gatttgatct gcatttacct gagtgggttt
       61 tgaacagctt ctcacatacc cctaacacct cggcactatg acggaaggcc gtcgatgtca
      121 agtacatctt cttgatgacc ggaagctgga actcctagta cagcccaagc ttttggccaa
      181 ggagctgctt gacctcgtgg catctcactt caacctgaag gagaaggaat actttggaat
      241 cgccttcaca gatgagacgg gacacttaaa ctggcttcaa ctagatcgaa gagtcttgga
      301 acacgacttc cccaaaaagt cgggaccagt ggttttatac ttttgtgtca ggttctatat
      361 agagagcatc tcatacctaa aggacaatgc caccatagag ctcttcttcc tgaacgccaa
      421 gtcctgtatc tacaaggagc tgattgatgt tgacagtgaa gtggtgtttg aattagcctc
      481 gtatatttta caggaggcaa agggagactt ttctagcaat gaagtggtga ggacggactt
      541 gaagaaacta ccagcacttc ccacgcaggc tctgaaggag cacccctccc tggcttactg
      601 cgaggaccgg gtcatcgagc actacaagaa actgaacggc cagaccagag gccaagccat
      661 tgtcaactac atgagcatcg tggagtctct cccaacctac ggggttcact attacgcagt
      721 gaaggacaag caggggatac cgtggtggct gggactgagc tacaaaggca tcttccagta
      781 tgactaccac gataaagtca agcccaggaa gatattccag tggaggcagt tggaaaacct
      841 gtatttcaga gagaagaagt tttctgtgga agttcatgac ccacgcaggg cttcagtgac
      901 gaggaggacg tttggacaca gcggcatcgc agtgcacacg tggtacgcgt gtccggcact
      961 gatcaagtcc atctgggcta tggccattag ccaacaccag ttctatctgg acagaaagca
     1021 gagtaagtcg aagatccatg ccgcccgcag cctgagcgaa atcgccatcg acctgacgga
     1081 gacggggacg ctgaagacgt cgaagctggc cagcatgggc agcaagggca agatcatcag
     1141 cggcagcagc ggcagcctgc tgtcctcagg ttctcaggaa tcagatagct cgcagtcggc
     1201 caagaaagac atgctggcag ccttgaaatc caggcaggaa gctctggagg aaacgcttcg
     1261 ccagcggctg gaagagctga agagactctg cctccgagaa gccgagctga cgggaaaact
     1321 gcccgtggag tatcccctgg atccaggaga ggaaccaccc attgttcgaa gaagaatcgg
     1381 gacagccttc aaactggacg agcagaaaat cctgcccaaa ggagaggagg ccgagctgga
     1441 acgcctggag cgggagtttg ccattcagtc ccagattacg gaggctgccc gccgcctggc
     1501 cagtgaccct aacgtcagca aaaaactgaa gaagcagagg aagacctctt acctgaatgc
     1561 actgaagaag ctgcaggaga ttgaaagcgc aatcaacgag aaccgcgtca agtctgggaa
     1621 gaaacccacc cagcgggcct cgctgatcat cgaagatgga aatattgcca gtgaagacag
     1681 ttccctgtca gatgccctag ttctagaaga tgaagactct caggtcacca gcacactgtc
     1741 ccccttacag tcccctcaca aagggctccc tcctcggcca ccgtcgcaca accggccgcc
     1801 ccctccgcag tccctggagg gactcaggca gatgcactgt caccgcaacg actatgacaa
     1861 gtcgcccata aagcccaaaa tgtggagcga gtcctcatta gacgagcctt acgagaaggt
     1921 caagaagcgt tcctcccaca gtcactccag tagccacaag cgcttcccca gcacggggag
     1981 ctgcgctgaa gcaggagggg gaggcagctc cctgcagacc agccccatcc gcagcctccc
     2041 gccctggaac tctcagtgca gcatgccgtc cacacccgac ctccgagtcc ggagtcccca
     2101 ctacgtgcat tccacgaggt cggtggacct cagccccacg cggctgcaca gcctcgccct
     2161 gcactttcgg caccggagct ccagcttgga gtcccagggc aagctcctgg gctcggagaa
     2221 cgacacgggg agccccgact tctacacgcc acggactcgc agcagcaacg gctcggaccc
     2281 catggacgac tgctcgtcgt gcaccagcca ctcgagctcg gagcactact acccggcgca
     2341 gatgaatgcc aactactcca cgctggccga ggactcgccg tccaaggcgc gcgcgcggca
     2401 gcggcagcgg gcggcgggcg cgctgggcgc ggcgaactcg ggcagcatgc ccaacctggc
     2461 ggcgcgcggc ggcggccacg gccacggcgt ctacctgcac agccagagcc agcccagctc
     2521 gcagtaccgc atcaaggagt acccgctgta cgtggagggc ggcgccacgc ccgtggtggt
     2581 gcgcagcctg gagagcgacc aggagggcca ctacagcgtc aaggcgcagt tcaagacctc
     2641 caactcgtac acggccggcg gcctgttccg ggagagctgg cgcggcggcg acgagggcga
     2701 cgcgggccgc ctgacgccgt cgcgctcgca gatcctgcgg actccgtcgc tgggccgcga
     2761 cggcggcgcc cacgacaagg gcgcgggccg cgccgccgtc tcggacgagc tgcgccagtg
     2821 gtaccagcgc tcgagcgcct cgcacaagga gcacagccgc ctgtcgcacg ccagctccgc
     2881 ctcctcggac ggcggctccc agtacagcgc ctcctcccag agcaccttcg tggcgcacag
     2941 cagggtcacc aggatgcccc agatgtgcaa ggccacgtca gctgccttac ctcaaagcca
     3001 gagaagctca acgccgtcca gtgaagttgg agcgacgccc cccggcagcc ctcaccacat
     3061 cctaacctgg cagaccggtt ttgctctcag gaaaactaca cgtttggatg tgaaccaagt
     3121 gcattctaat tcagaaacca aaagggtact caccagaagg acaatctgtc cttgcctaag
     3181 tcctgaatca agtcggacag accaaccaca aggagggagc ctgaagtcag aagtctcctt
     3241 cggatcccat ggctgccacc actgttcaaa gaacaagttc aagtttaaag atcctgttgg
     3301 cttcattcat caagttgcaa cccagttcct tatggaatta gaaactatcc ttgtcttaca
     3361 aacctagtcc ttacaagaac agaaatgcag ctctagaagc aattcaaagc ctacctatcc
     3421 ttttttttaa tcaatcccca aacatccctt cttcacctca aaaggtttgc agacattgta
     3481 aaagactgga tttaggaaag taaagtcctt cttggaggaa ctcccattct tttcctgtgc
     3541 ttttgagttg tgaatattcc acctggtctc ctccaggaac tcttacctag gccagctctt
     3601 agaaacgcaa acttcggaga gataattctt accagaagaa aaaaagaaaa gcaaggctct
     3661 ttggagctta ggggaatgaa aaacctttaa gtgtcttctc cacactgagc acgtaacctt
     3721 cattgagtcc agcttccaga aacaggattt ggattctact gttcttttac aaactagcgg
     3781 gttctgcatg gtcgcaccgg cctcgtggct gcgggcagca cggagcttgc gtgctctctc
     3841 catctctgcc tctacttcct gttcctggcg gtcacatcct cgggaggaag tggacagccc
     3901 tgtagtgtga aagctgcttg gccctgctcg ggcatttgcc catctctgac cagtgacggg
     3961 ctagaggact ctcactggcc ccccccccac ccccgggcca cttggccacc ctcagtgagg
     4021 gtagggcaga caccctggtg gaaggcacca ccgggacgac gcagagttag ggagggactg
     4081 tcccccaatg aacagcgtat gcccaccgtg gggtccaacc accttttgcc acgaaaagtc
     4141 tcacactccc tcaggcacga tggcacaggt cggttttatc agggtggaga gagtttgcag
     4201 ggtgggtagg atggaatcag ctacttacca ccggagggca gtgatagacg ggcagggcca
     4261 gttccggaat tagggccttg atgttacttt gcttctgaag ccaccttgaa gtgtattaac
     4321 cccagtatat attccagggg ttccaggcac aggactctct ttaaaggcca cggtatgctc
     4381 acagaggcct tgggttttcc agcgttgatg ggttttttaa aagccagatg agaaaccttc
     4441 acgaaatcca gaatgccttc atccacttat tcctagagaa atcagcgaat caaacagaaa
     4501 aacggcgatg atggcttatt ctcggtcata aactggttca cgaggtggtc ctaaagacgc
     4561 tcttgaaagc tgctttcctt tgagtctctt cctgccaccc gtccccagcc ataacggtag
     4621 cgcagggcat ggggagatca gcggcagggg aggaaatcat cttgacattt atggaaagtc
     4681 ctgatgctgt ttccaaatag gtatttctac ccccaaaacg acatgtgctc tggggaggtc
     4741 aaacttgaaa acccagcttg aacaaaccca cacctactaa cttagaggca cagacccgtg
     4801 tccctcacag gaatgctatt ccaaaaactg aaggctgtgg ttgaaggcct ataggtttca
     4861 tccctttagg aatcagcaca aatgaacact cagaagttac taggagtaga agctcaaaac
     4921 aaaggaagag cacaggcggt aatccaggcc cctctgcagc tgttcctgca cagggcccag
     4981 aggtcagccg tgcccacgtc aggggctgcg tgcggcccgc agggcaggga gaggaaggta
     5041 ggaccccatc tcctcaggcc gcatggctga ttaaccagcg tctgggcacc tcctgggcaa
     5101 actccagccc attcctagat tcagtgagat aaagtgtgat ctttagccct gaaagagcta
     5161 gtttaggatc agtggggagg ggccgttttc cctaataatg atgcctagca atgatcatgg
     5221 gcatcagcat atccacgtga ctgcttcttg atatgtaaag accacagctg acccttgaac
     5281 aacacagatt ggagctgcac aggtccactt atactcaggt ttttcccaac aaatacagtc
     5341 ggctggccct ccgatccacc gatgggaacc caccgatacg aagggccaac tgtactgcac
     5401 cagtttgtat cagggacttg atcatcctcg gactttggta tccagggggg gctcttggac
     5461 ccaattccct gcagatacca agggacgact gtgcccaacc tgcgtcgtga cgcacagctg
     5521 caagtctgtt ttttacaaag tcttttctat acacttttct atatattttc aatacgtttt
     5581 ttgataatca cacaacaata catgttattt caaataaaca gcagtaagac tccattcaaa
     5641 atatcacctc agtttcccta cagggaaacc tgccatttcg catgtgcttc caggacagaa
     5701 taaaaatctg gtggacgcta gttacacctg ggatctcagg gaggacaaag gaagcaagtg
     5761 ttctgagaaa aaaaagaatc ctgaggactc cagccggagg ggttctgggc ctcggctgca
     5821 tgggagagtc acgtgggggg atccgaaagc tccggccact caagcacagc ccagaccaat
     5881 taaacctgca tctccacggt gggtgttttg ggggttcccg ggcgagtccc acatgcagcc
     5941 gagcctgagg accactgcat taagtgttag ctccgtttcc ctccacacac gtgcaaggct
     6001 caggtcccct gggtgtgaat gttctgcagt ctgcgcgcgc ctgctgtgcg ctcagcactg
     6061 tcgcaggcct ggttccttat gaacggggaa gacggcccct atggacacgt acttctgaac
     6121 gcagactgcc aagtgacatt cccccctaac tgtctcctct cgcccttgga ttccctgcag
     6181 gagctacaat gatagctgtt tcctggatcc ctccctctat ccagaactag ctgatgtcca
     6241 gtggtacggg caagaaaaag ccaagcccgg gaccctcgtg tgagccagcc ggcctcaatc
     6301 tggccgcctc gacgccattc tgagatcacc tcactgcctc tcatttgcct tacccagacg
     6361 cagtgtcacc tgcaccagct tcggccctca gcacttttct tctcctgtct ccgcgtcccc
     6421 ctcaccctcc aaaaacctga ctggggagac attctggaag gttccggtcc cactgtgtgt
     6481 cccctggctc ccttgcccag agagccaggc accaatcctc aatggcacct tggtggctcc
     6541 ccactgccgt gacagccccc tggccaggaa ccatcaggga agctggctgg cctggactcc
     6601 tgtggactag tggcattggt ggaaaccagg aaaggggact taagtacagg gtgatccaga
     6661 aagactgtga aagctggggc ccacctggag gccccccaag cactcggtga agacgatgcc
     6721 ccgtgggaat attcagcaga cagctgaagt acttcctggg aggagtgact gttgcgggag
     6781 caggaagaac agaaacagaa gctggacacg tcagagatgc atccacggat cacagtcagt
     6841 tatgctgcca aagattttaa aaaattaaaa actaaaaaca cacaaaaaat taagaggggc
     6901 caagaggaag acgttctttc tgcaatgaaa tctcttttaa atcctcaact gctaccgcat
     6961 tccacacgtg aaagtcagcc atctgtaacg tgtgcccctc acccctctcc cttaacattc
     7021 cacctccctc tccatcgaga gcctgaaaac tgacccaatg tgatggtcac atcgggggac
     7081 ccctggctgg cattgctgac ttggatctcc atgagtctgg acccccagga gaacagaccc
     7141 acggggagta gcggagtgtc cgcttagccc cagcctgcat ggggggttca gcccaagaca
     7201 caaagctgct ttcctttggg gatttgtagg aaacgtaagg tgatggttgc caaaagtggt
     7261 tctctctcat taaaacaacc agtaaaagtg tatcctgttt ttttctca
//
LOCUS       XM_032620669            4268 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FERM domain containing 4A (FRMD4A),
            transcript variant X6, mRNA.
ACCESSION   XM_032620669
VERSION     XM_032620669.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4268
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4268
                     /gene="FRMD4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 long SRA reads, 9
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:116747943"
     CDS             1..3243
                     /gene="FRMD4A"
                     /codon_start=1
                     /product="FERM domain-containing protein 4A isoform X3"
                     /protein_id="XP_032476560.1"
                     /db_xref="GeneID:116747943"
                     /translation="MAAGPQGSEDLLSGWDRLVWGLTCRVLRTCRGGNLRVLQLMLKP
                     WCISRAVYQMTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIA
                     FTDETGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNA
                     KSCIYKELIDVDSEVVFELASYILQEAKGDFSSNEVVRTDLKKLPALPTQALKEHPSL
                     AYCEDRVIEHYKKLNGQTRGQAIVNYMSIVESLPTYGVHYYAVKDKQGIPWWLGLSYK
                     GIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRASVTRRTFGHSGIAVHT
                     WYACPALIKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKTSKLAS
                     MGSKGKIISGSSGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLEELKRL
                     CLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEEAELERLEREFA
                     IQSQITEAARRLASDPNVSKKLKKQRKTSYLNALKKLQEIESAINENRVKSGKKPTQR
                     ASLIIEDGNIASEDSSLSDALVLEDEDSQVTSTLSPLQSPHKGLPPRPPSHNRPPPPQ
                     SLEGLRQMHCHRNDYDKSPIKPKMWSESSLDEPYEKVKKRSSHSHSSSHKRFPSTGSC
                     AEAGGGGSSLQTSPIRSLPPWNSQCSMPSTPDLRVRSPHYVHSTRSVDLSPTRLHSLA
                     LHFRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSSSEHYY
                     PAQMNANYSTLAEDSPSKARARQRQRAAGALGAANSGSMPNLAARGGGHGHGVYLHSQ
                     SQPSSQYRIKEYPLYVEGGATPVVVRSLESDQEGHYSVKAQFKTSNSYTAGGLFRESW
                     RGGDEGDAGRLTPSRSQILRTPSLGRDGGAHDKGAGRAAVSDELRQWYQRSSASHKEH
                     SRLSHASSASSDGGSQYSASSQSTFVAHSRVTRMPQMCKATSAALPQSQRSSTPSSEV
                     GATPPGSPHHILTWQTGSYNDSCFLDPSLYPELADVQWYGQEKAKPGTLV"
     misc_feature    166..432
                     /gene="FRMD4A"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); Region: FERM_F1_FRMD4B; cd17200"
                     /db_xref="CDD:340720"
     misc_feature    175..777
                     /gene="FRMD4A"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    763..1095
                     /gene="FRMD4A"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); Region:
                     FERM_C_FRMD4A_FRMD4B; cd13191"
                     /db_xref="CDD:270012"
     misc_feature    order(787..789,838..840,844..846,871..873)
                     /gene="FRMD4A"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    order(883..885,898..909,1036..1038,1048..1050,1057..1062)
                     /gene="FRMD4A"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1036..1071
                     /gene="FRMD4A"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1180..1587
                     /gene="FRMD4A"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     Region: CUPID; pfam11819"
                     /db_xref="CDD:463360"
ORIGIN      
        1 atggctgcgg ggccgcaggg ctccgaggac ctgctgagtg gctgggaccg gctggtatgg
       61 ggcctgactt gccgggtgct gaggacgtgc cgagggggga acctgcgggt cctgcagctg
      121 atgctgaaac catggtgcat ctccagggct gtctaccaga tgacggaagg ccgtcgatgt
      181 caagtacatc ttcttgatga ccggaagctg gaactcctag tacagcccaa gcttttggcc
      241 aaggagctgc ttgacctcgt ggcatctcac ttcaacctga aggagaagga atactttgga
      301 atcgccttca cagatgagac gggacactta aactggcttc aactagatcg aagagtcttg
      361 gaacacgact tccccaaaaa gtcgggacca gtggttttat acttttgtgt caggttctat
      421 atagagagca tctcatacct aaaggacaat gccaccatag agctcttctt cctgaacgcc
      481 aagtcctgta tctacaagga gctgattgat gttgacagtg aagtggtgtt tgaattagcc
      541 tcgtatattt tacaggaggc aaagggagac ttttctagca atgaagtggt gaggacggac
      601 ttgaagaaac taccagcact tcccacgcag gctctgaagg agcacccctc cctggcttac
      661 tgcgaggacc gggtcatcga gcactacaag aaactgaacg gccagaccag aggccaagcc
      721 attgtcaact acatgagcat cgtggagtct ctcccaacct acggggttca ctattacgca
      781 gtgaaggaca agcaggggat accgtggtgg ctgggactga gctacaaagg catcttccag
      841 tatgactacc acgataaagt caagcccagg aagatattcc agtggaggca gttggaaaac
      901 ctgtatttca gagagaagaa gttttctgtg gaagttcatg acccacgcag ggcttcagtg
      961 acgaggagga cgtttggaca cagcggcatc gcagtgcaca cgtggtacgc gtgtccggca
     1021 ctgatcaagt ccatctgggc tatggccatt agccaacacc agttctatct ggacagaaag
     1081 cagagtaagt cgaagatcca tgccgcccgc agcctgagcg aaatcgccat cgacctgacg
     1141 gagacgggga cgctgaagac gtcgaagctg gccagcatgg gcagcaaggg caagatcatc
     1201 agcggcagca gcggcagcct gctgtcctca ggttctcagg aatcagatag ctcgcagtcg
     1261 gccaagaaag acatgctggc agccttgaaa tccaggcagg aagctctgga ggaaacgctt
     1321 cgccagcggc tggaagagct gaagagactc tgcctccgag aagccgagct gacgggaaaa
     1381 ctgcccgtgg agtatcccct ggatccagga gaggaaccac ccattgttcg aagaagaatc
     1441 gggacagcct tcaaactgga cgagcagaaa atcctgccca aaggagagga ggccgagctg
     1501 gaacgcctgg agcgggagtt tgccattcag tcccagatta cggaggctgc ccgccgcctg
     1561 gccagtgacc ctaacgtcag caaaaaactg aagaagcaga ggaagacctc ttacctgaat
     1621 gcactgaaga agctgcagga gattgaaagc gcaatcaacg agaaccgcgt caagtctggg
     1681 aagaaaccca cccagcgggc ctcgctgatc atcgaagatg gaaatattgc cagtgaagac
     1741 agttccctgt cagatgccct agttctagaa gatgaagact ctcaggtcac cagcacactg
     1801 tcccccttac agtcccctca caaagggctc cctcctcggc caccgtcgca caaccggccg
     1861 ccccctccgc agtccctgga gggactcagg cagatgcact gtcaccgcaa cgactatgac
     1921 aagtcgccca taaagcccaa aatgtggagc gagtcctcat tagacgagcc ttacgagaag
     1981 gtcaagaagc gttcctccca cagtcactcc agtagccaca agcgcttccc cagcacgggg
     2041 agctgcgctg aagcaggagg gggaggcagc tccctgcaga ccagccccat ccgcagcctc
     2101 ccgccctgga actctcagtg cagcatgccg tccacacccg acctccgagt ccggagtccc
     2161 cactacgtgc attccacgag gtcggtggac ctcagcccca cgcggctgca cagcctcgcc
     2221 ctgcactttc ggcaccggag ctccagcttg gagtcccagg gcaagctcct gggctcggag
     2281 aacgacacgg ggagccccga cttctacacg ccacggactc gcagcagcaa cggctcggac
     2341 cccatggacg actgctcgtc gtgcaccagc cactcgagct cggagcacta ctacccggcg
     2401 cagatgaatg ccaactactc cacgctggcc gaggactcgc cgtccaaggc gcgcgcgcgg
     2461 cagcggcagc gggcggcggg cgcgctgggc gcggcgaact cgggcagcat gcccaacctg
     2521 gcggcgcgcg gcggcggcca cggccacggc gtctacctgc acagccagag ccagcccagc
     2581 tcgcagtacc gcatcaagga gtacccgctg tacgtggagg gcggcgccac gcccgtggtg
     2641 gtgcgcagcc tggagagcga ccaggagggc cactacagcg tcaaggcgca gttcaagacc
     2701 tccaactcgt acacggccgg cggcctgttc cgggagagct ggcgcggcgg cgacgagggc
     2761 gacgcgggcc gcctgacgcc gtcgcgctcg cagatcctgc ggactccgtc gctgggccgc
     2821 gacggcggcg cccacgacaa gggcgcgggc cgcgccgccg tctcggacga gctgcgccag
     2881 tggtaccagc gctcgagcgc ctcgcacaag gagcacagcc gcctgtcgca cgccagctcc
     2941 gcctcctcgg acggcggctc ccagtacagc gcctcctccc agagcacctt cgtggcgcac
     3001 agcagggtca ccaggatgcc ccagatgtgc aaggccacgt cagctgcctt acctcaaagc
     3061 cagagaagct caacgccgtc cagtgaagtt ggagcgacgc cccccggcag ccctcaccac
     3121 atcctaacct ggcagaccgg gagctacaat gatagctgtt tcctggatcc ctccctctat
     3181 ccagaactag ctgatgtcca gtggtacggg caagaaaaag ccaagcccgg gaccctcgtg
     3241 tgagccagcc ggcctcaatc tggccgcctc gacgccattc tgagatcacc tcactgcctc
     3301 tcatttgcct tacccagacg cagtgtcacc tgcaccagct tcggccctca gcacttttct
     3361 tctcctgtct ccgcgtcccc ctcaccctcc aaaaacctga ctggggagac attctggaag
     3421 gttccggtcc cactgtgtgt cccctggctc ccttgcccag agagccaggc accaatcctc
     3481 aatggcacct tggtggctcc ccactgccgt gacagccccc tggccaggaa ccatcaggga
     3541 agctggctgg cctggactcc tgtggactag tggcattggt ggaaaccagg aaaggggact
     3601 taagtacagg gtgatccaga aagactgtga aagctggggc ccacctggag gccccccaag
     3661 cactcggtga agacgatgcc ccgtgggaat attcagcaga cagctgaagt acttcctggg
     3721 aggagtgact gttgcgggag caggaagaac agaaacagaa gctggacacg tcagagatgc
     3781 atccacggat cacagtcagt tatgctgcca aagattttaa aaaattaaaa actaaaaaca
     3841 cacaaaaaat taagaggggc caagaggaag acgttctttc tgcaatgaaa tctcttttaa
     3901 atcctcaact gctaccgcat tccacacgtg aaagtcagcc atctgtaacg tgtgcccctc
     3961 acccctctcc cttaacattc cacctccctc tccatcgaga gcctgaaaac tgacccaatg
     4021 tgatggtcac atcgggggac ccctggctgg cattgctgac ttggatctcc atgagtctgg
     4081 acccccagga gaacagaccc acggggagta gcggagtgtc cgcttagccc cagcctgcat
     4141 ggggggttca gcccaagaca caaagctgct ttcctttggg gatttgtagg aaacgtaagg
     4201 tgatggttgc caaaagtggt tctctctcat taaaacaacc agtaaaagtg tatcctgttt
     4261 ttttctca
//
LOCUS       XM_032620676           14496 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FERM domain containing 4A (FRMD4A),
            transcript variant X7, mRNA.
ACCESSION   XM_032620676
VERSION     XM_032620676.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14496
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..14496
                     /gene="FRMD4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 long SRA reads, 12 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747943"
     CDS             1..3144
                     /gene="FRMD4A"
                     /codon_start=1
                     /product="FERM domain-containing protein 4A isoform X4"
                     /protein_id="XP_032476567.1"
                     /db_xref="GeneID:116747943"
                     /translation="MVVQAAVAPNRSQRLLLKIPYGSLRRRSVERMTEGRRCQVHLLD
                     DRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTDETGHLNWLQLDRRVLEHDF
                     PKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYKELIDVDSEVVFELASY
                     ILQEAKGDFSSNEVVRTDLKKLPALPTQALKEHPSLAYCEDRVIEHYKKLNGQTRGQA
                     IVNYMSIVESLPTYGVHYYAVKDKQGIPWWLGLSYKGIFQYDYHDKVKPRKIFQWRQL
                     ENLYFREKKFSVEVHDPRRASVTRRTFGHSGIAVHTWYACPALIKSIWAMAISQHQFY
                     LDRKQSKSKIHAARSLSEIAIDLTETGTLKTSKLASMGSKGKIISGSSGSLLSSGSQE
                     SDSSQSAKKDMLAALKSRQEALEETLRQRLEELKRLCLREAELTGKLPVEYPLDPGEE
                     PPIVRRRIGTAFKLDEQKILPKGEEAELERLEREFAIQSQITEAARRLASDPNVSKKL
                     KKQRKTSYLNALKKLQEIESAINENRVKSGKKPTQRASLIIEDGNIASEDSSLSDALV
                     LEDEDSQVTSTLSPLQSPHKGLPPRPPSHNRPPPPQSLEGLRQMHCHRNDYDKSPIKP
                     KMWSESSLDEPYEKVKKRSSHSHSSSHKRFPSTGSCAEAGGGGSSLQTSPIRSLPPWN
                     SQCSMPSTPDLRVRSPHYVHSTRSVDLSPTRLHSLALHFRHRSSSLESQGKLLGSEND
                     TGSPDFYTPRTRSSNGSDPMDDCSSCTSHSSSEHYYPAQMNANYSTLAEDSPSKARAR
                     QRQRAAGALGAANSGSMPNLAARGGGHGHGVYLHSQSQPSSQYRIKEYPLYVEGGATP
                     VVVRSLESDQEGHYSVKAQFKTSNSYTAGGLFRESWRGGDEGDAGRLTPSRSQILRTP
                     SLGRDGGAHDKGAGRAAVSDELRQWYQRSSASHKEHSRLSHASSASSDGGSQYSASSQ
                     STFVAHSRVTRMPQMCKATSAALPQSQRSSTPSSEVGATPPGSPHHILTWQTGEATEN
                     SPITDGSESPTHQSTDE"
     misc_feature    100..366
                     /gene="FRMD4A"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); Region: FERM_F1_FRMD4B; cd17200"
                     /db_xref="CDD:340720"
     misc_feature    109..711
                     /gene="FRMD4A"
                     /note="Band 4.1 homologues; Region: B41; smart00295"
                     /db_xref="CDD:214604"
     misc_feature    697..1029
                     /gene="FRMD4A"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); Region:
                     FERM_C_FRMD4A_FRMD4B; cd13191"
                     /db_xref="CDD:270012"
     misc_feature    order(721..723,772..774,778..780,805..807)
                     /gene="FRMD4A"
                     /note="putative phosphoinositide binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    order(817..819,832..843,970..972,982..984,991..996)
                     /gene="FRMD4A"
                     /note="putative peptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    970..1005
                     /gene="FRMD4A"
                     /note="putative actin binding site 2 [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270012"
     misc_feature    1114..1521
                     /gene="FRMD4A"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     Region: CUPID; pfam11819"
                     /db_xref="CDD:463360"
ORIGIN      
        1 atggtggttc aggctgcagt ggctccgaat agatcccaga gacttttact gaaaattcct
       61 tatggatctc tgagaagacg cagcgtggag aggatgacgg aaggccgtcg atgtcaagta
      121 catcttcttg atgaccggaa gctggaactc ctagtacagc ccaagctttt ggccaaggag
      181 ctgcttgacc tcgtggcatc tcacttcaac ctgaaggaga aggaatactt tggaatcgcc
      241 ttcacagatg agacgggaca cttaaactgg cttcaactag atcgaagagt cttggaacac
      301 gacttcccca aaaagtcggg accagtggtt ttatactttt gtgtcaggtt ctatatagag
      361 agcatctcat acctaaagga caatgccacc atagagctct tcttcctgaa cgccaagtcc
      421 tgtatctaca aggagctgat tgatgttgac agtgaagtgg tgtttgaatt agcctcgtat
      481 attttacagg aggcaaaggg agacttttct agcaatgaag tggtgaggac ggacttgaag
      541 aaactaccag cacttcccac gcaggctctg aaggagcacc cctccctggc ttactgcgag
      601 gaccgggtca tcgagcacta caagaaactg aacggccaga ccagaggcca agccattgtc
      661 aactacatga gcatcgtgga gtctctccca acctacgggg ttcactatta cgcagtgaag
      721 gacaagcagg ggataccgtg gtggctggga ctgagctaca aaggcatctt ccagtatgac
      781 taccacgata aagtcaagcc caggaagata ttccagtgga ggcagttgga aaacctgtat
      841 ttcagagaga agaagttttc tgtggaagtt catgacccac gcagggcttc agtgacgagg
      901 aggacgtttg gacacagcgg catcgcagtg cacacgtggt acgcgtgtcc ggcactgatc
      961 aagtccatct gggctatggc cattagccaa caccagttct atctggacag aaagcagagt
     1021 aagtcgaaga tccatgccgc ccgcagcctg agcgaaatcg ccatcgacct gacggagacg
     1081 gggacgctga agacgtcgaa gctggccagc atgggcagca agggcaagat catcagcggc
     1141 agcagcggca gcctgctgtc ctcaggttct caggaatcag atagctcgca gtcggccaag
     1201 aaagacatgc tggcagcctt gaaatccagg caggaagctc tggaggaaac gcttcgccag
     1261 cggctggaag agctgaagag actctgcctc cgagaagccg agctgacggg aaaactgccc
     1321 gtggagtatc ccctggatcc aggagaggaa ccacccattg ttcgaagaag aatcgggaca
     1381 gccttcaaac tggacgagca gaaaatcctg cccaaaggag aggaggccga gctggaacgc
     1441 ctggagcggg agtttgccat tcagtcccag attacggagg ctgcccgccg cctggccagt
     1501 gaccctaacg tcagcaaaaa actgaagaag cagaggaaga cctcttacct gaatgcactg
     1561 aagaagctgc aggagattga aagcgcaatc aacgagaacc gcgtcaagtc tgggaagaaa
     1621 cccacccagc gggcctcgct gatcatcgaa gatggaaata ttgccagtga agacagttcc
     1681 ctgtcagatg ccctagttct agaagatgaa gactctcagg tcaccagcac actgtccccc
     1741 ttacagtccc ctcacaaagg gctccctcct cggccaccgt cgcacaaccg gccgccccct
     1801 ccgcagtccc tggagggact caggcagatg cactgtcacc gcaacgacta tgacaagtcg
     1861 cccataaagc ccaaaatgtg gagcgagtcc tcattagacg agccttacga gaaggtcaag
     1921 aagcgttcct cccacagtca ctccagtagc cacaagcgct tccccagcac ggggagctgc
     1981 gctgaagcag gagggggagg cagctccctg cagaccagcc ccatccgcag cctcccgccc
     2041 tggaactctc agtgcagcat gccgtccaca cccgacctcc gagtccggag tccccactac
     2101 gtgcattcca cgaggtcggt ggacctcagc cccacgcggc tgcacagcct cgccctgcac
     2161 tttcggcacc ggagctccag cttggagtcc cagggcaagc tcctgggctc ggagaacgac
     2221 acggggagcc ccgacttcta cacgccacgg actcgcagca gcaacggctc ggaccccatg
     2281 gacgactgct cgtcgtgcac cagccactcg agctcggagc actactaccc ggcgcagatg
     2341 aatgccaact actccacgct ggccgaggac tcgccgtcca aggcgcgcgc gcggcagcgg
     2401 cagcgggcgg cgggcgcgct gggcgcggcg aactcgggca gcatgcccaa cctggcggcg
     2461 cgcggcggcg gccacggcca cggcgtctac ctgcacagcc agagccagcc cagctcgcag
     2521 taccgcatca aggagtaccc gctgtacgtg gagggcggcg ccacgcccgt ggtggtgcgc
     2581 agcctggaga gcgaccagga gggccactac agcgtcaagg cgcagttcaa gacctccaac
     2641 tcgtacacgg ccggcggcct gttccgggag agctggcgcg gcggcgacga gggcgacgcg
     2701 ggccgcctga cgccgtcgcg ctcgcagatc ctgcggactc cgtcgctggg ccgcgacggc
     2761 ggcgcccacg acaagggcgc gggccgcgcc gccgtctcgg acgagctgcg ccagtggtac
     2821 cagcgctcga gcgcctcgca caaggagcac agccgcctgt cgcacgccag ctccgcctcc
     2881 tcggacggcg gctcccagta cagcgcctcc tcccagagca ccttcgtggc gcacagcagg
     2941 gtcaccagga tgccccagat gtgcaaggcc acgtcagctg ccttacctca aagccagaga
     3001 agctcaacgc cgtccagtga agttggagcg acgccccccg gcagccctca ccacatccta
     3061 acctggcaga ccggagaagc gacagaaaac tcgcccatca cggatgggtc tgagtctcca
     3121 actcaccaaa gtactgatga atagaggtat cgtaagggca tgtttcgttc ttacagcctt
     3181 cccccttcac tgttcatgag tctgtgatct cagatgtgct gcatctgtgt tgcctctggc
     3241 cgtatgtatc atcatttcca gaaggaaaca tccgagtggt gtggaagccg ttattttcat
     3301 gtcttatttc tagatacatg tggaagtcga tgtttatgtg tatggtttta catcaggtgt
     3361 gtgtgtgtta gacatcccca ctgctgcttc ccagaaaaga ccacaaagta tgtttgagac
     3421 ttgccccagg ctctctgtac ccgcagacac ttgtagacgc tttgacgggt actttgagtg
     3481 ctcgacgtcg gttgaaaagc acagcatcat gcagtttata tctcaaggcg ccaagggcag
     3541 actgagctca tccagaacca cctggtcacc cacgatctca tcccagtgtt cttgagtgac
     3601 ggctgtgcac tctaccaagt gccatagggc cctgctttcc aaactgtgac ccaccgacga
     3661 gcggcacccc catcatcacc caggagcttg ttaggaggta gactcctggc cgtactgaat
     3721 tcgaatctgc attctgacag gatccctggg taaatcaaat gcacgctgga atttgcaaag
     3781 ccctgctaca gcgggcataa aaacatgaac acctggtctg gttcctgtcc tcggggggag
     3841 acaaggtatc gaaattaaga gcatttcaag ggttagctga aaaggatacc attcagaagt
     3901 ggctaaaaaa aagtggtaag tttattccat caccaaatga ttcttgcagc acttacgtat
     3961 taaataccct gagactttaa acagaatgcg aaaaggtttc caaggggaga gggatccctt
     4021 ccaaggcccg gggtgcgagg aggggtctcg aagggtggag gccagttcaa gggcgaaagc
     4081 agcacagatg cagaaacaag caggggtgtc tggggaacag cagagtgtca ttttgctgta
     4141 gagaaagagc gagacttcag cctgaaaagt agggtaggac aagatcctga cccgaagtgg
     4201 ggagacgtgg aacaattttt actgcaagtg ccctgagctg gcagatgggg gattcggaaa
     4261 ccaggggctg agcctttgag aggaagatgg tgttaaaaga attcaactga gtatatttga
     4321 aagagcttac tggctttatt tcagtgattc atgaatcagg cagcatccag gccggcagat
     4381 agaaaggagc tgtacgaaac gaaagacatg caggcagaaa ggagcgggaa cgaggaagtt
     4441 acaccaggtg aaaaagcagg ttggttgtag cccagtcgct ctccgttagg ggacggcagg
     4501 ggtccgtcgg gcagacgtgc tgatccggcg agtcccgatt tgactggtta aagattcctt
     4561 tctggaggcg ctgaaactat aaagtgaagt ctcggtttgg tgatatggaa cctagcctaa
     4621 gcaacttcat tttgggtctg ctgtcttgtt tttaacagtg acccccttgc atcagactct
     4681 gagcgtaatt aagagaagtg atcaaaattt agggcattag cgctactccc agctatggct
     4741 ttggagctct taccgggttt ttttgctgaa tcgctgtgtg gtcttcacag gtcacggcac
     4801 tgggttcatg gtctttcagt cggtcattct cttcgtgcct tttctgctgt tctgttctga
     4861 gggagatcat ttgcttggta gctagtggct gcaaagctgc atttaaagct tttgcgggaa
     4921 tacagcacag tacggtgact gctgtagtat tataagcaga ataatcccca aagaaaggtc
     4981 ccgttggctg gtttgttcag tagtctcccg gggctgagtc tcaccttccc cggaagtgtt
     5041 gacccaggcg cagcaagcgg tgcgggtcac agcacagaca tctccttgtt cagctaaagg
     5101 atactcaacc agaggcgtcg ctcattttca agaacaactc tggccagaga gtctagggat
     5161 tttcattggg cagctgttgc tttaccagca gattctggaa tcttcaagag gtaaggagag
     5221 actcctggtc gtggcctcat ttgtatcagc tcctggccgg cggagcaggg ctgcaccaaa
     5281 ggaagcagat tttgaaccac tgaatgcttc ccggtaattc ctgtttccac ctgtggctcg
     5341 ggccccaaaa ggtgacagcc gtggaggcct gtacacctga agggcctgtg gacagcacag
     5401 gtggttttat cctctttccc ttgcctcgcg tccctttctt tgtacagagc ctggatgcag
     5461 ggctccccgg ggtgttaacc agagacaagg aagtagatcc ccagggttag ggagtgggac
     5521 acaacagaaa ggtgggctgg ccgtttggtc cagagaaacg gaggcattgg aaatcaggga
     5581 gcggtctgtg atggacagaa cagtgcaatc actggcatcg tgataactca aagtctttga
     5641 ggttagattt accccccttt gcgatggcct tagatagata tgtgaacagt ggcgttacct
     5701 ttccaagcca gagcaaagca aaaaggatgg acagcaagaa tcataaacac cttcacagtg
     5761 tgagactagg cagaggatgg tcagagaggg aaggaagaat ggaaagacag acagacacgc
     5821 tgttgatctg acatctcggg aggaagcagt cagtctgtct atctcgatgg tggctacgtc
     5881 tcttgctcgt tggtttgact gatttgagag ctccagcttt tctgcacggg accggaaggc
     5941 aggtggagcc ttcgtcagtt gtgaaacacg tacccacggt ttggcccctt gtgatgtggc
     6001 agccatgtgg tggtcaagag ttcttggtag gttccttgcc gtgaatctca cttttgcaaa
     6061 agcgtcagag taaaacaata actgtctgta aatgacaaaa gaacttaaaa atgcccagtg
     6121 ctaaagatct gatgagagtt cattataatg gaattgacaa ggaaatttgg ttatttctgt
     6181 gattgacaga caatatttta agataaccag aattatgacc gataccgtta taccaaggca
     6241 tatcagagct ctaggaattt cacacaattt ctagaacact taattatatt aataattatt
     6301 aaaatactaa caacccaaga agatttatca ccacttagtt ggcaacgctt tccgtgtaac
     6361 tgaacaataa acctaggcag cgtaacacct ctcagaaggt aagcgacaaa gcctctgaaa
     6421 tctgatttag aacatggggg cacaaatgta ccacggttta caaggcattt gtgtcagact
     6481 ggacaaggag agttatgatc ggagaaaggt aaaaataagg cactgagaga ccgggctgca
     6541 aaagtttaac actgtagctg acatcgaagg gacttcagct gttgcctaag gtggcaccaa
     6601 ggatgattga tagaagaaaa atcaggttac aggaaggacc agggagtctc caaccttcca
     6661 gacagatcgg agttttaaat gacaaataca gagtctgaaa ggttacctcc cttggcaatc
     6721 gtctggaaga cacgggcaac ccggagagaa aacagataag tggaggagtc tggttaactt
     6781 cccctatcat gatttccaca gtaaagagaa cagtggcgga aatcaagtta agttacacag
     6841 gcctggcccg ttgtcttggg atagctgtct gtctatgtcc gaggtcgtct gcttctggtg
     6901 ccgggagatc ttaagtgtga gatcaccggt ggctttgctg gttcattctg gtcctgttac
     6961 tcctttcagg tgggccggat gccttcgaat ttagctgtgc aggaactggc gagcagtacc
     7021 agaaaagatc ctttccgagg agggaagcag gaatccttta gttggggtct tttccagcag
     7081 acgtattctc caggaagtag gtcatgaggg gtgtcagtgt caggctgtaa taagcttttt
     7141 aacctgtagg aggaatagag aatagatgac tagccatttt tttaataggt cctgttgggc
     7201 aatttgaggg tcacagtatg gagactgaag cagacgcatg ggtctgccag gtactgtttc
     7261 ctcgggagtg agcttaggtt tttcaaaagg caaggacctt aggtgcaaaa ggaccggtga
     7321 cagcaccttg gtcaaagtct caggaaattt tcctaattgg gttttaatga tgtcattagt
     7381 cttttctccg agtcctaaga aggactctcc agggttctcg gattacctgg ccagtaaaat
     7441 gagttcctca gtcactgtgc agaaatgacg ggggcgcccc atatagggat gacgttttga
     7501 agtaatttct ttgctacaaa agaggcagtt gcttatcaac aggaaaaagc ttctacccag
     7561 tgagaaattt gttcatgtgt tcttaacaat tctgtttaga ttagtcatga aaatttctcg
     7621 aggcattaaa cagctagcca acatcttaag ttctcttcct tggtgacaaa ttttgtaaca
     7681 gattaacgtg aacttatttg actaataaac ccaggtagaa taaaagttgt acatatgcat
     7741 tatatttaac atacctactt taatttaatt aaaccagcaa acttaagtta gcttttgttt
     7801 actaaagatt tttcctagat catgcaaact tgaaaaacat ttgggttaag tttctgtatt
     7861 tcagagtttt agaatactta atttgataat cgcttatttt gctttaagcc aattcaatat
     7921 gctcttttgc aaattaattt tggcaatacc actcaggtag aaaaacatta catacaatgt
     7981 acacagataa acatacagac agatgcagag atcgtaaagc ttttgtttta aaattttacc
     8041 tatgagacag gtacaataat gcaaaactta ctagtttata gaagaacact tttatccaaa
     8101 tcctgtttct ggaagttgga gtaaggcagg gttacctgct cagatggcta acgcttttca
     8161 ttactatttg tggagaagac acttaaggtt tttcattcac ctaagctcca aatagccttc
     8221 cccacctttt tttccttctg gtgagaatta cctgcctgaa gtttgtgttt ctgagagctg
     8281 gcctaggtaa gaattctcgg agaccaggta gaacacgcac aactcaaagg cacagggaaa
     8341 aaaatgggac ttcgtccagg aaggactttt ctttcttaaa tccaggtatt ttacaatgtc
     8401 tgcaagcctg ttgagatgaa gaagggatgt ctggggattg acagaaagga caggtgagct
     8461 ttgaactgcc tctagagctg catctctgtg cttgtaaaga ctaggtctgt aagacaagga
     8521 cagtcgggga attgggttgc aacgtgaatg acatcatagc ccatccaact acattatctt
     8581 ctatttgctt ctttagatca gagagaagat cttcaactaa gatggaattc aagagattcc
     8641 tacgctctag atttagagct ctgtctttgg aatgtttttc tttccctctg ggtacatagc
     8701 ttcattttga cttaggggac aaagccttta aaaagttcct aacgggctct gtatatcagc
     8761 gtccagcagt ttggccaact tctgaccata gagctactta aacaagcctt ttaaatatct
     8821 tgtcaggggg acaaacagta aatattcctg gccatattgg aagaccccat ggatgcaaga
     8881 ggcattccca atgagggtgc aaaggacacc actctcccaa gctccagagc cacccccaaa
     8941 gataaccaaa agaaggcaag acttagttcc cctgagggct ggcactcatc gataggacct
     9001 cagccaccaa tataaggtgc aacttacatt tctgttatat ctgccccacc tgacggtcgc
     9061 caagccaagt tctcaggaca caaaacgaga caaacaagaa ggcaacagct gtccctggga
     9121 gagaaaagat caaccaatgg gtctggattt ggaaaggaag ggacatgaac gttttacctt
     9181 tctctctcaa ctgggcactg caaacagaga ttcaggagag ctgactctgg tcagaattct
     9241 caccccttcc agcttctgcc agatttacca ggatcccatc tgcaggctct ggaacaactg
     9301 gggtttagag agtatagcca ctaatctacc agaatttggc aaggttttcc attaatttta
     9361 gtttcccctt ggctgttgaa gagaataact ggtagcagtt acgggagaat ccatggagtc
     9421 ccatcaaccc tgggagagcc caaatggggg tccttctttg agggtagata tgggagtgtt
     9481 cgtaaggcca ccaacttgag ggcttttgtt tacagtcacg cagtctcttc aaagtgggga
     9541 gacagtgcag acggaggaga gtatgaggca aggtggagag aggggagagt aggagttaac
     9601 atcagtctta cagtctttta ttttgggtat ctcttgtatc tttgttttat catcgttttg
     9661 caatgaatct ttcagtgaag ctatttggga agtttgaagc cttctggagg cttcctcacg
     9721 ccaattaaaa taggtatccc attccgcttg tttgatttgg gagcccttgc tttcaggtgc
     9781 acttctgaag tgaacagtct tggctaactg gaacattcct cagggtgacc attgccattt
     9841 tagtttgtct tcagtaagat tggtccatgt gcatgcagac agaccaaaaa tttttttaac
     9901 acaaaactgc tgtgggtggt tcctaaggcc agggtggggg gcacccttaa agcatttaga
     9961 tgactgagat cccatttgca gactttttcc tagaatgaag aaaatattct ctaaggcgtg
    10021 agcttagggc tgggacttgg gttttgtctg atagtttacc tttcacagga tacttctttg
    10081 tcctggtgga cggcctttgc ccatgaccag gggtctcatt acatgcaatt tttctgcagg
    10141 tggccagtga cctattgtga accttgcttg gctgtgacca ccctatcctt acccgggagc
    10201 cttgtgcttt ggaaacagtt gtctctcgtt aggtgtttga cccatgccct ccaatttttg
    10261 ttttagtttt gctctcagga aaactacacg tttggatgtg aaccaagtgc attctaattc
    10321 agaaaccaaa agggtactca ccagaaggac aatctgtcct tgcctaagtc ctgaatcaag
    10381 tcggacagac caaccacaag gagggagcct gaagtcagaa gtctccttcg gatcccatgg
    10441 ctgccaccac tgttcaaaga acaagttcaa gtttaaagat cctgttggct tcattcatca
    10501 agttgcaacc cagttcctta tggaattaga aactatcctt gtcttacaaa cctagtcctt
    10561 acaagaacag aaatgcagct ctagaagcaa ttcaaagcct acctatcctt ttttttaatc
    10621 aatccccaaa catcccttct tcacctcaaa aggtttgcag acattgtaaa agactggatt
    10681 taggaaagta aagtccttct tggaggaact cccattcttt tcctgtgctt ttgagttgtg
    10741 aatattccac ctggtctcct ccaggaactc ttacctaggc cagctcttag aaacgcaaac
    10801 ttcggagaga taattcttac cagaagaaaa aaagaaaagc aaggctcttt ggagcttagg
    10861 ggaatgaaaa acctttaagt gtcttctcca cactgagcac gtaaccttca ttgagtccag
    10921 cttccagaaa caggatttgg attctactgt tcttttacaa actagcgggt tctgcatggt
    10981 cgcaccggcc tcgtggctgc gggcagcacg gagcttgcgt gctctctcca tctctgcctc
    11041 tacttcctgt tcctggcggt cacatcctcg ggaggaagtg gacagccctg tagtgtgaaa
    11101 gctgcttggc cctgctcggg catttgccca tctctgacca gtgacgggct agaggactct
    11161 cactggcccc ccccccaccc ccgggccact tggccaccct cagtgagggt agggcagaca
    11221 ccctggtgga aggcaccacc gggacgacgc agagttaggg agggactgtc ccccaatgaa
    11281 cagcgtatgc ccaccgtggg gtccaaccac cttttgccac gaaaagtctc acactccctc
    11341 aggcacgatg gcacaggtcg gttttatcag ggtggagaga gtttgcaggg tgggtaggat
    11401 ggaatcagct acttaccacc ggagggcagt gatagacggg cagggccagt tccggaatta
    11461 gggccttgat gttactttgc ttctgaagcc accttgaagt gtattaaccc cagtatatat
    11521 tccaggggtt ccaggcacag gactctcttt aaaggccacg gtatgctcac agaggccttg
    11581 ggttttccag cgttgatggg ttttttaaaa gccagatgag aaaccttcac gaaatccaga
    11641 atgccttcat ccacttattc ctagagaaat cagcgaatca aacagaaaaa cggcgatgat
    11701 ggcttattct cggtcataaa ctggttcacg aggtggtcct aaagacgctc ttgaaagctg
    11761 ctttcctttg agtctcttcc tgccacccgt ccccagccat aacggtagcg cagggcatgg
    11821 ggagatcagc ggcaggggag gaaatcatct tgacatttat ggaaagtcct gatgctgttt
    11881 ccaaataggt atttctaccc ccaaaacgac atgtgctctg gggaggtcaa acttgaaaac
    11941 ccagcttgaa caaacccaca cctactaact tagaggcaca gacccgtgtc cctcacagga
    12001 atgctattcc aaaaactgaa ggctgtggtt gaaggcctat aggtttcatc cctttaggaa
    12061 tcagcacaaa tgaacactca gaagttacta ggagtagaag ctcaaaacaa aggaagagca
    12121 caggcggtaa tccaggcccc tctgcagctg ttcctgcaca gggcccagag gtcagccgtg
    12181 cccacgtcag gggctgcgtg cggcccgcag ggcagggaga ggaaggtagg accccatctc
    12241 ctcaggccgc atggctgatt aaccagcgtc tgggcacctc ctgggcaaac tccagcccat
    12301 tcctagattc agtgagataa agtgtgatct ttagccctga aagagctagt ttaggatcag
    12361 tggggagggg ccgttttccc taataatgat gcctagcaat gatcatgggc atcagcatat
    12421 ccacgtgact gcttcttgat atgtaaagac cacagctgac ccttgaacaa cacagattgg
    12481 agctgcacag gtccacttat actcaggttt ttcccaacaa atacagtcgg ctggccctcc
    12541 gatccaccga tgggaaccca ccgatacgaa gggccaactg tactgcacca gtttgtatca
    12601 gggacttgat catcctcgga ctttggtatc cagggggggc tcttggaccc aattccctgc
    12661 agataccaag ggacgactgt gcccaacctg cgtcgtgacg cacagctgca agtctgtttt
    12721 ttacaaagtc ttttctatac acttttctat atattttcaa tacgtttttt gataatcaca
    12781 caacaataca tgttatttca aataaacagc agtaagactc cattcaaaat atcacctcag
    12841 tttccctaca gggaaacctg ccatttcgca tgtgcttcca ggacagaata aaaatctggt
    12901 ggacgctagt tacacctggg atctcaggga ggacaaagga agcaagtgtt ctgagaaaaa
    12961 aaagaatcct gaggactcca gccggagggg ttctgggcct cggctgcatg ggagagtcac
    13021 gtggggggat ccgaaagctc cggccactca agcacagccc agaccaatta aacctgcatc
    13081 tccacggtgg gtgttttggg ggttcccggg cgagtcccac atgcagccga gcctgaggac
    13141 cactgcatta agtgttagct ccgtttccct ccacacacgt gcaaggctca ggtcccctgg
    13201 gtgtgaatgt tctgcagtct gcgcgcgcct gctgtgcgct cagcactgtc gcaggcctgg
    13261 ttccttatga acggggaaga cggcccctat ggacacgtac ttctgaacgc agactgccaa
    13321 gtgacattcc cccctaactg tctcctctcg cccttggatt ccctgcagga gctacaatga
    13381 tagctgtttc ctggatccct ccctctatcc agaactagct gatgtccagt ggtacgggca
    13441 agaaaaagcc aagcccggga ccctcgtgtg agccagccgg cctcaatctg gccgcctcga
    13501 cgccattctg agatcacctc actgcctctc atttgcctta cccagacgca gtgtcacctg
    13561 caccagcttc ggccctcagc acttttcttc tcctgtctcc gcgtccccct caccctccaa
    13621 aaacctgact ggggagacat tctggaaggt tccggtccca ctgtgtgtcc cctggctccc
    13681 ttgcccagag agccaggcac caatcctcaa tggcaccttg gtggctcccc actgccgtga
    13741 cagccccctg gccaggaacc atcagggaag ctggctggcc tggactcctg tggactagtg
    13801 gcattggtgg aaaccaggaa aggggactta agtacagggt gatccagaaa gactgtgaaa
    13861 gctggggccc acctggaggc cccccaagca ctcggtgaag acgatgcccc gtgggaatat
    13921 tcagcagaca gctgaagtac ttcctgggag gagtgactgt tgcgggagca ggaagaacag
    13981 aaacagaagc tggacacgtc agagatgcat ccacggatca cagtcagtta tgctgccaaa
    14041 gattttaaaa aattaaaaac taaaaacaca caaaaaatta agaggggcca agaggaagac
    14101 gttctttctg caatgaaatc tcttttaaat cctcaactgc taccgcattc cacacgtgaa
    14161 agtcagccat ctgtaacgtg tgcccctcac ccctctccct taacattcca cctccctctc
    14221 catcgagagc ctgaaaactg acccaatgtg atggtcacat cgggggaccc ctggctggca
    14281 ttgctgactt ggatctccat gagtctggac ccccaggaga acagacccac ggggagtagc
    14341 ggagtgtccg cttagcccca gcctgcatgg ggggttcagc ccaagacaca aagctgcttt
    14401 cctttgggga tttgtaggaa acgtaaggtg atggttgcca aaagtggttc tctctcatta
    14461 aaacaaccag taaaagtgta tcctgttttt ttctca
//
LOCUS       XR_004348140            5587 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus FERM domain containing 4A (FRMD4A),
            transcript variant X8, misc_RNA.
ACCESSION   XR_004348140
VERSION     XR_004348140.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5587
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5587
                     /gene="FRMD4A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 12 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116747943"
     misc_RNA        1..5587
                     /gene="FRMD4A"
                     /product="FERM domain containing 4A, transcript variant
                     X8"
                     /db_xref="GeneID:116747943"
ORIGIN      
        1 atggtggttc aggctgcagt ggctccgaat agatcccaga gacttttact gaaaattcct
       61 tatggatctc tgagaagacg cagcgtggag aggatgacgg aaggccgtcg atgtcaagta
      121 catcttcttg atgaccggaa gctggaactc ctagtacagc ccaagctttt ggccaaggag
      181 ctgcttgacc tcgtggcatc tcacttcaac ctgaaggaga aggaatactt tggaatcgcc
      241 ttcacagatg agacgggaca cttaaactgg cttcaactag atcgaagagt cttggaacac
      301 gacttcccca aaaagtcggg accagtggtt ttatactttt gtgtcaggtt ctatatagag
      361 agcatctcat acctaaagga caatgccacc atagagctct tcttcctgaa cgccaagtcc
      421 tgtatctaca aggagctgat tgatgttgac agtgaagtgg tgtttgaatt agcctcgtat
      481 attttacagg aggcaaaggg agacttttct agcaatgaag tggtgaggac ggacttgaag
      541 aaactaccag cacttcccac gcaggctctg aaggagcacc cctccctggc ttactgcgag
      601 gaccgggtca tcgagcacta caagaaactg aacggccaga ccagaggcca agccattgtc
      661 aactacatga gcatcgtgga gtctctccca acctacgggg ttcactatta cgcagtgaag
      721 gacaagcagg ggataccgtg gtggctggga ctgagctaca aaggcatctt ccagtatgac
      781 taccacgata aagtcaagcc caggaagata ttccagtgga ggcagttgga aaacctgtat
      841 ttcagagaga agaagttttc tgtggaagtt catgacccac gcagggcttc agtgacgagg
      901 aggacgtttg gacacagcgg catcgcagtg cacacgtggt acgcgtgtcc ggcactgatc
      961 aagtccatct gggctatggc cattagccaa caccagttct atctggacag aaagcagagt
     1021 aagtcgaaga tccatgccgc ccgcagcctg agcgaaatcg ccatcgacct gacggagacg
     1081 gggacgctga agacgtcgaa gctggccagc atgggcagca agggcaagat catcagcggc
     1141 agcagcggca gcctgctgtc ctcaggttct caggaatcag atagctcgca gtcggccaag
     1201 aaagacatgc tggcagcctt gaaatccagg caggaagctc tggaggaaac gcttcgccag
     1261 cggctggaag agctgaagag actctgcctc cgagaagccg agctgacggg aaaactgccc
     1321 gtggagtatc ccctggatcc aggagaggaa ccacccattg ttcgaagaag aatcgggaca
     1381 gccttcaaac tggacgagca gaaaatcctg cccaaaggag aggaggccga gctggaacgc
     1441 ctggagcggg agtttgccat tcagtcccag attacggagg ctgcccgccg cctggccagt
     1501 gaccctaacg tcagcaaaaa actgaagaag cagaggaaga cctcttacct gaatgcactg
     1561 aagaagctgc aggagattga aagcgcaatc aacgagaacc gcgtcaagtc tgggaagaaa
     1621 cccacccagc gggcctcgct gatcatcgaa gatggaaata ttgccagtga agacagttcc
     1681 ctgtcagatg ccctagttct agaagatgaa gactctcagg tcaccagcac actgtccccc
     1741 ttacagtccc ctcacaaagg gctccctcct cggccaccgt cgcacaaccg gccgccccct
     1801 ccgcagtccc tggagggact caggcagatg cactgtcacc gcaacgacta tgacaagtcg
     1861 cccataaagc ccaaaatgtg gagcgagtcc tcattagacg agccttacga gaaggtcaag
     1921 aagcgttcct cccacagtca ctccagtagc cacaagcgct tccccagcac ggggagctgc
     1981 gctgaagcag gagggggagg cagctccctg cagaccagcc ccatccgcag cctcccgccc
     2041 tggaactctc agtgcagcat gccgtccaca cccgacctcc gagtccggag tccccactac
     2101 gtgcattcca cgaggtcggt ggacctcagc cccacgcggc tgcacagcct cgccctgcac
     2161 tttcggcacc ggagctccag cttggagtcc cagggcaagc tcctgggctc ggagaacgac
     2221 acggggagcc ccgacttcta cacgccacgg actcgcagca gcaacggctc ggaccccatg
     2281 gacgactgct cgtcgtgcac cagccactcg agctcggagc actactaccc ggcgcagatg
     2341 aatgccaact actccacgct ggccgaggac tcgccgtcca aggcgcgcgc gcggcagcgg
     2401 cagcgggcgg cgggcgcgct gggcgcggcg aactcgggca gcatgcccaa cctggcggcg
     2461 cgcggcggcg gccacggcca cggcgtctac ctgcacagcc agagccagcc cagctcgcag
     2521 taccgcatca aggagtaccc gctgtacgtg gagggcggcg ccacgcccgt ggtggtgcgc
     2581 agcctggaga gcgaccagga gggccactac agcgtcaagg cgcagttcaa gacctccaac
     2641 tcgtacacgg ccggcggcct gttccgggag agctggcgcg gcggcgacga gggcgacgcg
     2701 ggccgcctga cgccgtcgcg ctcgcagatc ctgcggactc cgtcgctggg ccgcgacggc
     2761 ggcgcccacg acaagggcgc gggccgcgcc gccgtctcgg acgagctgcg ccagtggtac
     2821 cagcgctcga gcgcctcgca caaggagcac agccgcctgt cgcacgccag ctccgcctcc
     2881 tcggacggcg gctcccagta cagcgcctcc tcccagagca ccttcgtggc gcacagcagg
     2941 gtcaccagga tgccccagat gtgcaaggcc acgtcagctg ccttacctca aagccagaga
     3001 agctcaacgc cgtccagtga agttggagcg acgccccccg gcagccctca ccacatccta
     3061 acctggcaga ccggagaagc gacagaaaac tcgcccatca cggatgggtc tgagtctcca
     3121 actcaccaaa gtactgatga atagaggtat cgtaagggca tgtttcgttc ttacagcctt
     3181 cccccttcac tgttcatgag tctgtgatct cagatgtgct gcatctgtgt tgcctctggc
     3241 cgtatgtatc atcatttcca gaaggaaaca tccgagtggt gtggaagccg ttattttcat
     3301 gtcttatttc tagatacatg tggaagtcga tgtttatgtg tatggtttta catcaggtgt
     3361 gtgtgtgtta gacatcccca ctgctgcttc ccagaaaaga ccacaaagta tgtttgagac
     3421 ttgccccagg ctctctgtac ccgcagacac ttgtagacgc tttgacgggt actttgagtg
     3481 ctcgacgtcg gttgaaaagc acagcatcat gcagtttata tctcaaggcg ccaagggcag
     3541 actgagctca tccagaacca cctggtcacc cacgatctca tcccagtgtt cttgagtgac
     3601 ggctgtgcac tctaccaagt gccatagggc cctgctttcc aaactgtgac ccaccgacga
     3661 gcggcacccc catcatcacc caggagcttg ttaggaggta gactcctggc cgtactgaat
     3721 tcgaatctgc attctgacag gatccctggg taaatcaaat gcacgctgga atttgcaaag
     3781 ccctgctaca gcgggcataa aaacatgaac acctggtctg gttcctgtcc tcggggggag
     3841 acaaggtatc gaaattaaga gcatttcaag ggttagctga aaaggatacc attcagaagt
     3901 ggctaaaaaa aagtggtaag tttattccat caccaaatga ttcttgcagc acttacgtat
     3961 taaataccct gagactttaa acagaatgcg aaaaggtttc caaggggaga gggatccctt
     4021 ccaaggcccg gggtgcgagg aggggtctcg aagggtggag gccagttcaa gggcgaaagc
     4081 agcacagatg cagaaacaag caggggtgtc tggggaacag cagagtgtca ttttgctgta
     4141 gagaaagagc gagacttcag cctgaaaagt agggtaggac aagatcctga cccgaagtgg
     4201 ggagacgtgg aacaattttt actgcaagtg ccctgagctg gcagatgggg gattcggaaa
     4261 ccaggggctg agcctttgag aggaagatgg tgttaaaaga attcaactga gtatatttga
     4321 aagagcttac tggctttatt tcagtgattc atgaatcagg cagcatccag gccggcagat
     4381 agaaaggagc tgtacgaaac gaaagacatg caggcagaaa ggagcgggaa cgaggaagtt
     4441 acaccaggtg aaaaagcagg agctacaatg atagctgttt cctggatccc tccctctatc
     4501 cagaactagc tgatgtccag tggtacgggc aagaaaaagc caagcccggg accctcgtgt
     4561 gagccagccg gcctcaatct ggccgcctcg acgccattct gagatcacct cactgcctct
     4621 catttgcctt acccagacgc agtgtcacct gcaccagctt cggccctcag cacttttctt
     4681 ctcctgtctc cgcgtccccc tcaccctcca aaaacctgac tggggagaca ttctggaagg
     4741 ttccggtccc actgtgtgtc ccctggctcc cttgcccaga gagccaggca ccaatcctca
     4801 atggcacctt ggtggctccc cactgccgtg acagccccct ggccaggaac catcagggaa
     4861 gctggctggc ctggactcct gtggactagt ggcattggtg gaaaccagga aaggggactt
     4921 aagtacaggg tgatccagaa agactgtgaa agctggggcc cacctggagg ccccccaagc
     4981 actcggtgaa gacgatgccc cgtgggaata ttcagcagac agctgaagta cttcctggga
     5041 ggagtgactg ttgcgggagc aggaagaaca gaaacagaag ctggacacgt cagagatgca
     5101 tccacggatc acagtcagtt atgctgccaa agattttaaa aaattaaaaa ctaaaaacac
     5161 acaaaaaatt aagaggggcc aagaggaaga cgttctttct gcaatgaaat ctcttttaaa
     5221 tcctcaactg ctaccgcatt ccacacgtga aagtcagcca tctgtaacgt gtgcccctca
     5281 cccctctccc ttaacattcc acctccctct ccatcgagag cctgaaaact gacccaatgt
     5341 gatggtcaca tcgggggacc cctggctggc attgctgact tggatctcca tgagtctgga
     5401 cccccaggag aacagaccca cggggagtag cggagtgtcc gcttagcccc agcctgcatg
     5461 gggggttcag cccaagacac aaagctgctt tcctttgggg atttgtagga aacgtaaggt
     5521 gatggttgcc aaaagtggtt ctctctcatt aaaacaacca gtaaaagtgt atcctgtttt
     5581 tttctca
//
LOCUS       XR_004348141           12888 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747982
            (LOC116747982), transcript variant X1, ncRNA.
ACCESSION   XR_004348141
VERSION     XR_004348141.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12888
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..12888
                     /gene="LOC116747982"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747982"
     ncRNA           1..12888
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747982"
                     /product="uncharacterized LOC116747982, transcript variant
                     X1"
                     /db_xref="GeneID:116747982"
ORIGIN      
        1 ggcatgtggg atcttcctgg accagggctg gaacccgtgt tccctgcatc ggcaggtgga
       61 ttcttaacca ctgcgccacc agggaagtcc cgggggaaag tatcttgata tgcttcgacc
      121 tgttattacc atggtccctt ctagaacagt aacacattat gctaacgtgg gctgaaaggg
      181 tacatgtgtt ttttgcaaaa ttataaaaaa ttgtgtttgc ctctcccgtg gcacctgccg
      241 taccctgctt tgggatgaga ccctgcaaac cacatttctc ctttgctgac tggctttctg
      301 ttgggttcta ccgatggtgg ggcacatggg agatgggaac cccgaggagg gaagaagggg
      361 cctgttcctc gattcttgct tcctgtccct gacggtggtg gcccagctgc gggtcgcagc
      421 ccagcagtgt cagttcattc ttggaggagg tggtcctggc ctgcaggatt gccacacttt
      481 catagaacca gctttgcctc gaaaattgca gcgccgttag cctggtgccc ctttcagaca
      541 tttgtattcc ggctccgtga ggtcctgcca agtcccgagg cacgggtacc agctgcgcgg
      601 tgtccatgcc tcagaggttt gactcccagc tctgcggggt gcctccttca gcttctaggt
      661 tttcaaagtc ccttctctgt tccccatccc taagggtgct ggctgcttcc cttggttatc
      721 atctctgtca cctcttcagt atcctgttaa caacccttga tattcaaccc tttctgttaa
      781 aataactggc atggtcttgg cctcctcatg gaacaggcag ccggatttgc agttcctgcg
      841 tgagggggaa tgaggccggg tcctctcccg gcacccccag ctcagattgg cttcccactg
      901 gcttgtgtgg cctttgctcc tagattctgg gattcacccc aagcgtggag aactaagacg
      961 atggagaaac aggtatctca cctcttgttc agtcgtgcag tcctgtcctc gtgccctctc
     1021 tccttcattc ccactctgct cttcctcagt ctcttcaaga ctttctgtcc actcagtctt
     1081 ctgctctctg ctacttcatc gtcaccttct tggctttgct ttgctgtgta gtccatctag
     1141 atcccattgt caccacttca cttaatcacc aggaccgtct actctcctgc cctgttgccc
     1201 tccggccaca ctgcactaca cagcctgggc ctggcacgtt ccatctgtgc cctcccgcgc
     1261 ccactagcag gtgccactgg agggagttca cacgccaagc gtcgggtgtc acctgggccc
     1321 caagtgatgc ctggagggcg ttctccacct cctctcctct cggggctgtt ctgacctgtg
     1381 actctgctcc agcccgaccc tgccctcctt tcctgtctca cctggaggat ggcctcacct
     1441 gtcttttctc acactgggtt gagtatggag gcaaagcttc aggtctgttt cccacactca
     1501 ccacctgttc ttaccttact tggaggagaa ggggttgctc ctcctgtcat gggctagctc
     1561 ttccgctgac cgaccttgct tacccaatac tgtcctcatg acacatcttc taatgtgcca
     1621 tgtaatttgc tttcattttc tccctccttc tactcccagg agaatatata tcttctaagg
     1681 gcagggattt cacatgtggt tgaccatgag atgagaaaga aagtcatcat ggttgattcc
     1741 gagggttttg gcctgagccc tggaagattg gagttgcctc taactcagct gaggaaggtc
     1801 attaatggag caggtttgga gggaacgtca gagattcagt ctggatgtgt tagcacatta
     1861 gacatccatg tggagctgtt gagtgggctg ggggactgta ccagttttag agctgaggtc
     1921 agggtacagg gagaaacaca ggtgtcctca gcataagaca cttaaaacca tggacaagat
     1981 gagagctaca ggaagtgact gtggatggtc aagaggaggc cttgaactga gctctggggc
     2041 actctggcac ccagacctcg ggcagatgaa gaaaaccctc aaggagattg gcgggaggag
     2101 ccctgactga taaggaggaa aagctggagg acacgctgtc ctggattcca gtggcaagcg
     2161 tgtttccatg gaggatgcga cagggaccag ctgtgcccgt tgctactgaa ccagggacca
     2221 caggggacag agactaagga caacgacctc cagagcccag atgccctcgg tgtttcttcc
     2281 acgtggcacg gttctggggg aacagtaccc agcctagcac atactgcaca cagggtttac
     2341 ccctaaagcg atctgtgact attaatccct tccgcaagct ggtatcacca acccagccgt
     2401 gcacagagcc ctgaaccgtc cagcctggcc ccagcctgct gtgagccccc agaggaaccc
     2461 cacagtgctc ttcaagctgc agcaggggga gcaccgtggg tatttactga tatttcattt
     2521 taaccaatgg taagtgtccg ttcttaccct ccgggtctgg tagagtctat tgtctattct
     2581 tggattacat atacataaaa aacaaagctt tttcttgtta cgctaaagct aacttcaact
     2641 ctgcttgccc acaaatctac cccaccccag ctcctgtctc tggctgtcca ctgcctttcc
     2701 agtaggaagt cattacaagt gagaaaagaa atttcccccc gccccgccac ttgcgccaat
     2761 aagcacagca tcccacctct gtggagaccg tgtttgtgcc atttgaaata acccaactac
     2821 gagtgtgcac ttgttagtat tataaaagta tttttgaggc ctttgaagat ggatggcttt
     2881 ccagttgtgt gttaagcata gctcaaaaca cgtgtaaacg tgcagctccc acacaccttt
     2941 cttctctctt ccttttttgg tacctgcaga ccatcgggac acatcgaggt agccgatgat
     3001 gtcgtaggca tatgggccct ctgggagctg atatattttt tctgctgcca gctagtagac
     3061 atgtgagtac agtcttccta cctaagggca tagctgggtt cttgcaagaa gtgacacgtt
     3121 ggtaaccggg tgccatcgga tctgaactct ttgtcacaca agtgctaaca aacagaaaat
     3181 gggctacgac agttaaacgc ctgaatggat cgcaatgtgc tttttccctt ggcttcccat
     3241 aaaaaatcaa atgaaacacc ttgtgagaaa aaaacaggat acacttttac tggttgtttt
     3301 aatgagagag aaccactttt ggcaaccatc accttacgtt tcctacaaat ccccaaagga
     3361 aagcagcttt gtgtcttggg ctgaaccccc catgcaggct ggggctaagc ggacactccg
     3421 ctactccccg tgggtctgtt ctcctggggg tccagactca tggagatcca agtcagcaat
     3481 gccagccagg ggtcccccga tgtgaccatc acattgggtc agttttcagg ctctcgatgg
     3541 agagggaggt ggaatgttaa gggagagggg tgaggggcac acgttacaga tggctgactt
     3601 tcacgtgtgg aatgcggtag cagttgagga tttaaaagag atttcattgc agaaagaacg
     3661 tcttcctctt ggcccctctt aattttttgt gtgtttttag tttttaattt tttaaaatct
     3721 ttggcagcat aactgactgt gatccgtgga tgcatctctg acgtgtccag cttctgtttc
     3781 tgttcttcct gctcccgcaa cagtcactcc tcccaggaag tacttcagct gtctgctgaa
     3841 tattcccacg gggcatcgtc ttcaccgagt gcttgggggg cctccaggtg ggccccagct
     3901 ttcacagtct ttctggatca ccctgtactt aagtcccctt tcctggtttc caccaatgcc
     3961 actagtccac aggagtccag gccagccagc ttccctgatg gttcctggcc agggggctgt
     4021 cacggcagtg gggagccacc aaggtgccat tgaggattgg tgcctggctc tctgggcaag
     4081 ggagccaggg gacacacagt gggaccggaa ccttccagaa tgtctcccca gtcaggtttt
     4141 tggagggtga gggggacgcg gagacaggag aagaaaagtg ctgagggccg aagctggtgc
     4201 aggtgacact gcgtctgggt aaggcaaatg agaggcagtg aggtgatctc agaatggcgt
     4261 cgaggcggcc agattgaggc cggctggctc acacgagggt cccgggcttg gctttttctt
     4321 gcccgtacca ctggacatca gctagttctg gatagaggga gggatccagg aaacagctat
     4381 cattgtagct cctgcaggga atccaagggc gagaggagac agttaggggg gaatgtcact
     4441 tggcagtctg cgttcagaag tacgtgtcca taggggccgt cttccccgtt cataaggaac
     4501 caggcctgcg acagtgctga gcgcacagca ggcgcgcgca gactgcagaa cattcacacc
     4561 caggggacct gagccttgca cgtgtgtgga gggaaacgga gctaacactt aatgcagtgg
     4621 tcctcaggct cggctgcatg tgggactcgc ccgggaaccc ccaaaacacc caccgtggag
     4681 atgcaggttt aattggtctg ggctgtgctt gagtggccgg agctttcgga tccccccacg
     4741 tgactctccc atgcagccga ggcccagaac ccctccggct ggagtcctca ggattctttt
     4801 ttttctcaga acacttgctt cctttgtcct ccctgagatc ccaggtgtaa ctagcgtcca
     4861 ccagattttt attctgtcct ggaagcacat gcgaaatggc aggtttccct gtagggaaac
     4921 tgaggtgata ttttgaatgg agtcttactg ctgtttattt gaaataacat gtattgttgt
     4981 gtgattatca aaaaacgtat tgaaaatata tagaaaagtg tatagaaaag actttgtaaa
     5041 aaacagactt gcagctgtgc gtcacgacgc aggttgggca cagtcgtccc ttggtatctg
     5101 cagggaattg ggtccaagag ccccccctgg ataccaaagt ccgaggatga tcaagtccct
     5161 gatacaaact ggtgcagtac agttggccct tcgtatcggt gggttcccat cggtggatcg
     5221 gagggccagc cgactgtatt tgttgggaaa aacctgagta taagtggacc tgtgcagctc
     5281 caatctgtgt tgttcaaggg tcagctgtgg tctttacata tcaagaagca gtcacgtgga
     5341 tatgctgatg cccatgatca ttgctaggca tcattattag ggaaaacggc ccctccccac
     5401 tgatcctaaa ctagctcttt cagggctaaa gatcacactt tatctcactg aatctaggaa
     5461 tgggctggag tttgcccagg aggtgcccag acgctggtta atcagccatg cggcctgagg
     5521 agatggggtc ctaccttcct ctccctgccc tgcgggccgc acgcagcccc tgacgtgggc
     5581 acggctgacc tctgggccct gtgcaggaac agctgcagag gggcctggat taccgcctgt
     5641 gctcttcctt tgttttgagc ttctactcct agtaacttct gagtgttcat ttgtgctgat
     5701 tcctaaaggg atgaaaccta taggccttca accacagcct tcagtttttg gaatagcatt
     5761 cctgtgaggg acacgggtct gtgcctctaa gttagtaggt gtgggtttgt tcaagctggg
     5821 ttttcaagtt tgacctcccc agagcacatg tcgttttggg ggtagaaata cctatttgga
     5881 aacagcatca ggactttcca taaatgtcaa gatgatttcc tcccctgccg ctgatctccc
     5941 catgccctgc gctaccgtta tggctgggga cgggtggcag gaagagactc aaaggaaagc
     6001 agctttcaag agcgtcttta ggaccacctc gtgaaccagt ttatgaccga gaataagcca
     6061 tcatcgccgt ttttctgttt gattcgctga tttctctagg aataagtgga tgaaggcatt
     6121 ctggatttcg tgaaggtttc tcatctggct tttaaaaaac ccatcaacgc tggaaaaccc
     6181 aaggcctctg tgagcatacc gtggccttta aagagagtcc tgtgcctgga acccctggaa
     6241 tatatactgg ggttaataca cttcaaggtg gcttcagaag caaagtaaca tcaaggccct
     6301 aattccggaa ctggccctgc ccgtctatca ctgccctccg gtgtggtggc agccatggga
     6361 tccgaaggag acttctgact tcaggctccc tccttgtggt tggtctgtcc gacttgattc
     6421 aggacttagg caaggacaga ttgtccttct ggtgagtacc cttttggttt ctgaattaga
     6481 atgcacttgg ttcacatcca aacgtgtagt tttcctgaga gcaaaactaa aacaaaaatt
     6541 ggagggcatg ggtcaaacac ctaacgagag acaactgttt ccaaagcaca aggctcccgg
     6601 gtaaggatag ggtggtcaca gccaagcaag gttcacaata ggtcactggc cacctgcaga
     6661 aaaattgcat gtaatgagac ccctggtcat gggcaaaggc cgtccaccag gacaaagaag
     6721 tatcctgtga aaggtaaact atcagacaaa acccaagtcc cagccctaag ctcacgcctt
     6781 agagaatatt ttcttcattc taggaaaaag tctgcaaatg ggatctcagt catctaaatg
     6841 ctttaagggt gccccccacc ctggccttag gaaccaccca cagcagtttt gtgttaaaaa
     6901 aatttttggt ctgtctgcat gcacatggac caatcttact gaagacaaac taaaatggca
     6961 atggtcaccc tgaggaatgt tccagttagc caagactgtt cacttcagaa gtgcacctga
     7021 aagcaagggc tcccaaatca aacaagcgga atgggatacc tattttaatt ggcgtgagga
     7081 agcctccaga aggcttcaaa cttcccaaat agcttcactg aaagattcat tgcaaaacga
     7141 tgataaaaca aagatacaag agatacccaa aataaaagac tgtaagactg atgttaactc
     7201 ctactctccc ctctctccac cttgcctcat actctcctcc gtctgcactg tctccccact
     7261 ttgaagagac tgcgtgactg taaacaaaag ccctcaagtt ggtggcctta cgaacactcc
     7321 catatctacc ctcaaagaag gacccccatt tgggctctcc cagggttgat gggactccat
     7381 ggattctccc gtaactgcta ccagttattc tcttcaacag ccaaggggaa actaaaatta
     7441 atggaaaacc ttgccaaatt ctggtagatt agtggctata ctctctaaac cccagttgtt
     7501 ccagagcctg cagatgggat cctggtaaat ctggcagaag ctggaagggg tgagaattct
     7561 gaccagagtc agctctcctg aatctctgtt tgcagtgccc agttgagaga gaaaggtaaa
     7621 acgttcatgt cccttccttt ccaaatccag acccattggt tgatcttttc tctcccaggg
     7681 acagctgttg ccttcttgtt tgtctcgttt tgtgtcctga gaacttggct tggcgaccgt
     7741 caggtggggc agatataaca gaaatgtaag ttgcacctta tattggtggc tgaggtccta
     7801 tcgatgagtg ccagccctca ggggaactaa gtcttgcctt cttttggtta tctttggggg
     7861 tggctctgga gcttgggaga gtggtgtcct ttgcaccctc attgggaatg cctcttgcat
     7921 ccatggggtc ttccaatatg gccaggaata tttactgttt gtccccctga caagatattt
     7981 aaaaggcttg tttaagtagc tctatggtca gaagttggcc aaactgctgg acgctgatat
     8041 acagagcccg ttaggaactt tttaaaggct ttgtccccta agtcaaaatg aagctatgta
     8101 cccagaggga aagaaaaaca ttccaaagac agagctctaa atctagagcg taggaatctc
     8161 ttgaattcca tcttagttga agatcttctc tctgatctaa agaagcaaat agaagataat
     8221 gtagttggat gggctatgat gtcattcacg ttgcaaccca attccccgac tgtccttgtc
     8281 ttacagacct agtctttaca agcacagaga tgcagctcta gaggcagttc aaagctcacc
     8341 tgtcctttct gtcaatcccc agacatccct tcttcatctc aacaggcttg cagacattgt
     8401 aaaatacctg gatttaagaa agaaaagtcc ttcctggacg aagtcccatt tttttccctg
     8461 tgcctttgag ttgtgcgtgt tctacctggt ctccgagaat tcttacctag gccagctctc
     8521 agaaacacaa acttcaggca ggtaattctc accagaagga aaaaaaggtg gggaaggcta
     8581 tttggagctt aggtgaatga aaaaccttaa gtgtcttctc cacaaatagt aatgaaaagc
     8641 gttagccatc tgagcaggta accctgcctt actccaactt ccagaaacag gatttggata
     8701 aaagtgttct tctataaact agtaagtttt gcattattgt acctgtctca taggtaaaat
     8761 tttaaaacaa aagctttacg atctctgcat ctgtctgtat gtttatctgt gtacattgta
     8821 tgtaatgttt ttctacctga gtggtattgc caaaattaat ttgcaaaaga gcatattgaa
     8881 ttggcttaaa gcaaaataag cgattatcaa attaagtatt ctaaaactct gaaatacaga
     8941 aacttaaccc aaatgttttt caagtttgca tgatctagga aaaatcttta gtaaacaaaa
     9001 gctaacttaa gtttgctggt ttaattaaat taaagtaggt atgttaaata taatgcatat
     9061 gtacaacttt tattctacct gggtttatta gtcaaataag ttcacgttaa tctgttacaa
     9121 aatttgtcac caaggaagag aacttaagat gttggctagc tgtttaatgc ctcgagaaat
     9181 tttcatgact aatctaaaca gaattgttaa gaacacatga acaaatttct cactgggtag
     9241 aagctttttc ctgttgataa gcaactgcct cttttgtagc aaagaaatta cttcaaaacg
     9301 tcatccctat atggggcgcc cccgtcattt ctgcacagtg actgaggaac tcattttact
     9361 ggccaggtaa tccgagaacc ctggagagtc cttcttagga ctcggagaaa agactaatga
     9421 catcattaaa acccaattag gaaaatttcc tgagactttg accaaggtgc tgtcaccggt
     9481 ccttttgcac ctaaggtcct tgccttttga aaaacctaag ctcactcccg aggaaacagt
     9541 acctggcaga cccatgcgtc tgcttcagtc tccatactgt gaccctcaaa ttgcccaaca
     9601 ggacctatta aaaaaatggc tagtcatcta ttctctattc ctcctacagg ttaaaaagct
     9661 tattacagcc tgacactgac acccctcatg acctacttcc tggagaatac gtctgctgga
     9721 aaagacccca actaaaggat tcctgcttcc ctcctcggaa aggatctttt ctggtactgc
     9781 tcgccagttc ctgcacagct aaattcgaag gcatccggcc cacctgaaag gagtaacagg
     9841 accagaatga accagcaaag ccaccggtga tctcacactt aagatctccc ggcaccagaa
     9901 gcagacgacc tcggacatag acagacagct atcccaagac aacgggccag gcctgtgtaa
     9961 cttaacttga tttccgccac tgttctcttt actgtggaaa tcatgatagg ggaagttaac
    10021 cagactcctc cacttatctg ttttctctcc gggttgcccg tgtcttccag acgattgcca
    10081 agggaggtaa cctttcagac tctgtatttg tcatttaaaa ctccgatctg tctggaaggt
    10141 tggagactcc ctggtccttc ctgtaacctg atttttcttc tatcaatcat ccttggtgcc
    10201 accttaggca acagctgaag tcccttcgat gtcagctaca gtgttaaact tttgcagccc
    10261 ggtctctcag tgccttattt ttacctttct ccgatcataa ctctccttgt ccagtctgac
    10321 acaaatgcct tgtaaaccgt ggtacatttg tgcccccatg ttctaaatca gatttcagag
    10381 gctttgtcgc ttaccttctg agaggtgtta cgctgcctag gtttattgtt cagttacacg
    10441 gaaagcgttg ccaactaagt ggtgataaat cttcttgggt tgttagtatt ttaataatta
    10501 ttaatataat taagtgttct agaaattgtg tgaaattcct agagctctga tatgccttgg
    10561 tataacggta tcggtcataa ttctggttat cttaaaatat tgtctgtcaa tcacagaaat
    10621 aaccaaattt ccttgtcaat tccattataa tgaactctca tcagatcttt agcactgggc
    10681 atttttaagt tcttttgtca tttacagaca gttattgttt tactctgacg cttttgcaaa
    10741 agtgagattc acggcaagga acctaccaag aactcttgac caccacatgg ctgccacatc
    10801 acaaggggcc aaaccgtggg tacgtgtttc acaactgacg aaggctccac ctgccttccg
    10861 gtcccgtgca gaaaagctgg agctctcaaa tcagtcaaac caacgagcaa gagacgtagc
    10921 caccatcgag atagacagac tgactgcttc ctcccgagat gtcagatcaa cagcgtgtct
    10981 gtctgtcttt ccattcttcc ttccctctct gaccatcctc tgcctagtct cacactgtga
    11041 aggtgtttat gattcttgct gtccatcctt tttgctttgc tctggcttgg aaaggtaacg
    11101 ccactgttca catatctatc taaggccatc gcaaaggggg gtaaatctaa cctcaaagac
    11161 tttgagttat cacgatgcca gtgattgcac tgttctgtcc atcacagacc gctccctgat
    11221 ttccaatgcc tccgtttctc tggaccaaac ggccagccca cctttctgtt gtgtcccact
    11281 ccctaaccct ggggatctac ttccttgtct ctggttaaca ccccggggag ccctgcatcc
    11341 aggctctgta caaagaaagg gacgcgaggc aagggaaaga ggataaaacc acctgtgctg
    11401 tccacaggcc cttcaggtgt acaggcctcc acggctgtca ccttttgggg cccgagccac
    11461 aggtggaaac aggaattacc gggaagcatt cagtggttca aaatctgctt cctttggtgc
    11521 agccctgctc cgccggccag gagctgatac aaatgaggcc acgaccagga gtctctcctt
    11581 acctcttgaa gattccagaa tctgctggta aagcaacagc tgcccaatga aaatccctag
    11641 actctctggc cagagttgtt cttgaaaatg agcgacgcct ctggttgagt atcctttagc
    11701 tgaacaagga gatgtctgtg ctgtgacccg caccgcttgc tgcgcctggg tcaacacttc
    11761 cggggaaggt gagactcagc cccgggagac tactgaacaa accagccaac gggacctttc
    11821 tttggggatt attctgctta taatactaca gcagtcaccg tactgtgctg tattcccgca
    11881 aaagctttaa atgcagcttt gcagccacta gctaccaagc aaatgatctc cctcagaaca
    11941 gaacagcaga aaaggcacga agagaatgac cgactgaaag accatgaacc cagtgccgtg
    12001 acctgtgaag accacacagc gattcagcaa aaaaacccgg taagagctcc aaagccatag
    12061 ctgggagtag cgctaatgcc ctaaattttg atcacttctc ttaattacgc tcagagtctg
    12121 atgcaagggg gtcactgtta aaaacaagac agcagaccca aaatgaagtt gcttaggcta
    12181 ggttccatat caccaaaccg agacttcact ttatagtttc agcgcctcca gaaaggaatc
    12241 tttaaccagt caaatcggga ctcgccggat cagcacgtct gcccgacgga cccctgccgt
    12301 cccctaacgg agagcgactg ggctacaacc aacctgcttt ttcacctggt gtaacttcct
    12361 cgttcccgct cctttctgcc tgcatgtctt tcgtttcgta cagctccttt ctatctgccg
    12421 gcctggatgc tgcctgattc atgaatcact gaaataaagc cagtaagctc tttcaaatat
    12481 actcagttga attcttttaa caccatcttc ctctcaaagg ctcagcccct ggtttccgaa
    12541 tcccccatct gccagctcag ggcacttgca gtaaaaattg ttccacgtct ccccacttcg
    12601 ggtcaggatc ttgtcctacc ctacttttca ggctgaagtc tcgctctttc tctacagcaa
    12661 aatgacactc tgctgttccc cagacacccc tgcttgtttc tgcatctgtg ctgctttcgc
    12721 ccttgaactg gcctccaccc ttcgagaccc ctcctcgcac cccgggcctt ggaagggatc
    12781 cctctcccct tggaaacctt ttcgcattct gtttaaagtc tcagggtatt taatacgtaa
    12841 gtgctgcaag aatcatttgg tgatggaata aacttaccac tttttttt
//
LOCUS       XR_004348142            8747 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116747982
            (LOC116747982), transcript variant X2, ncRNA.
ACCESSION   XR_004348142
VERSION     XR_004348142.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8747
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..8747
                     /gene="LOC116747982"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747982"
     ncRNA           1..8747
                     /ncRNA_class="lncRNA"
                     /gene="LOC116747982"
                     /product="uncharacterized LOC116747982, transcript variant
                     X2"
                     /db_xref="GeneID:116747982"
ORIGIN      
        1 caagaggcaa ctgagatctt ttcattttga aaatgcttta ataagtgttg acacactgtt
       61 ttgcaaaatg taaaggtact atacaaattc ttaatacaaa aagaataaat taaaagcaga
      121 tttcttttta attctgcaac tttgtctaca acatacatct ttgtcattga ttacagttga
      181 acagaatcca gtaaagtcat tttacatgct ctacaaatca gtttcaggag caacctaatc
      241 ctttcttccc cattattaaa ctagagtcca ttttacacga cttgtaataa actattgaca
      301 ttaatgtata tgtaaaactt tacacctagt taattaagca gtaactggtc atctgatagc
      361 acctggatgg ggtttgctat atgtagaact aaactaatac cgaatgaaaa caacttggaa
      421 tttgaacggt ttcaacactc acctgcatac gatcaaatta aaaaaaccca cctgtctcac
      481 aacaaagtct gacgtaggtg ttttcaccag ccttctggct aaacaggcag tttgttatac
      541 gtatccaaag actccaacag gggctttata tcagaccagg ggtttcatat ttcatcttaa
      601 tttgctttaa agaaataggg gtatataaag agcttgccag tgcttgtgta cagtaactat
      661 atcatttccc accacactga tcattaacca cgtcagtctc aaaggaccag cacttttatg
      721 tacatcctgt aggaactgaa cgcagctcaa cagtaaaacc tgttttactc aatctccgtc
      781 tttactacca gaccatcaca ctgtttgccg gaactgtaat tctgcccctc tatcctgcct
      841 cctttccttc ctgccccccg aatcccacac ccaagtgttt agaaagaatt ttcgtctctc
      901 agtctttgta acccaactgg gctaaaaatt tatccgactg acttccgact tgatttcaag
      961 ccactgtccc tgttgtgtca tccgcggtat gtaaccttgt cacctcatcc atttcccttt
     1021 cgacttttcc tttgggacag ggttcagttt gattattcac gcatcttcct ttgggagaaa
     1081 gaatctggcc caatacagaa cgttcccgaa tggggaaaga aaaacctgct gtctgtagct
     1141 ctgaccatca aaataagagc aacacccctc cccgtgtcaa tccccagaat cgtttaatat
     1201 catcataacc aattttattt accctgcagg gtttacccct aaagcgatct gtgactatta
     1261 atcccttccg caagctggta tcaccaaccc agccgtgcac agagccctga accgtccagc
     1321 ctggccccag cctgctgtga gcccccagag gaaccccaca gtgctcttca agctgcagca
     1381 gggggagcac cgtgggtatt tactgatatt tcattttaac caatggtaag tgtccgttct
     1441 taccctccgg gtctggtaga gtctattgtc tattcttgga ttacatatac ataaaaaaca
     1501 aagctttttc ttgttacgct aaagctaact tcaactctgc ttgcccacaa atctacccca
     1561 ccccagctcc tgtctctggc tgtccactgc ctttccagta ggaagtcatt acaagtgaga
     1621 aaagaaattt ccccccgccc cgccacttgc gccaataagc acagcatccc acctctgtgg
     1681 agaccgtgtt tgtgccattt gaaataaccc aactacgagt gtgcacttgt tagtattata
     1741 aaagtatttt tgaggccttt gaagatggat ggctttccag ttgtgtgtta agcatagctc
     1801 aaaacacgtg taaacgtgca gctcccacac acctttcttc tctcttcctt ttttggtacc
     1861 tgcagaccat cgggacacat cgaggtagcc gatgatgtcg taggcatatg ggccctctgg
     1921 gagctgatat attttttctg ctgccagcta gtagacatga ataagtggat gaaggcattc
     1981 tggatttcgt gaaggtttct catctggctt ttaaaaaacc catcaacgct ggaaaaccca
     2041 aggcctctgt gagcataccg tggcctttaa agagagtcct gtgcctggaa cccctggaat
     2101 atatactggg gttaatacac ttcaaggtgg cttcagaagc aaagtaacat caaggcccta
     2161 attccggaac tggccctgcc cgtctatcac tgccctccgg tgtggtggca gccatgggat
     2221 ccgaaggaga cttctgactt caggctccct ccttgtggtt ggtctgtccg acttgattca
     2281 ggacttaggc aaggacagat tgtccttctg gtgagtaccc ttttggtttc tgaattagaa
     2341 tgcacttggt tcacatccaa acgtgtagtt ttcctgagag caaaactaaa acaaaaattg
     2401 gagggcatgg gtcaaacacc taacgagaga caactgtttc caaagcacaa ggctcccggg
     2461 taaggatagg gtggtcacag ccaagcaagg ttcacaatag gtcactggcc acctgcagaa
     2521 aaattgcatg taatgagacc cctggtcatg ggcaaaggcc gtccaccagg acaaagaagt
     2581 atcctgtgaa aggtaaacta tcagacaaaa cccaagtccc agccctaagc tcacgcctta
     2641 gagaatattt tcttcattct aggaaaaagt ctgcaaatgg gatctcagtc atctaaatgc
     2701 tttaagggtg ccccccaccc tggccttagg aaccacccac agcagttttg tgttaaaaaa
     2761 atttttggtc tgtctgcatg cacatggacc aatcttactg aagacaaact aaaatggcaa
     2821 tggtcaccct gaggaatgtt ccagttagcc aagactgttc acttcagaag tgcacctgaa
     2881 agcaagggct cccaaatcaa acaagcggaa tgggatacct attttaattg gcgtgaggaa
     2941 gcctccagaa ggcttcaaac ttcccaaata gcttcactga aagattcatt gcaaaacgat
     3001 gataaaacaa agatacaaga gatacccaaa ataaaagact gtaagactga tgttaactcc
     3061 tactctcccc tctctccacc ttgcctcata ctctcctccg tctgcactgt ctccccactt
     3121 tgaagagact gcgtgactgt aaacaaaagc cctcaagttg gtggccttac gaacactccc
     3181 atatctaccc tcaaagaagg acccccattt gggctctccc agggttgatg ggactccatg
     3241 gattctcccg taactgctac cagttattct cttcaacagc caaggggaaa ctaaaattaa
     3301 tggaaaacct tgccaaattc tggtagatta gtggctatac tctctaaacc ccagttgttc
     3361 cagagcctgc agatgggatc ctggtaaatc tggcagaagc tggaaggggt gagaattctg
     3421 accagagtca gctctcctga atctctgttt gcagtgccca gttgagagag aaaggtaaaa
     3481 cgttcatgtc ccttcctttc caaatccaga cccattggtt gatcttttct ctcccaggga
     3541 cagctgttgc cttcttgttt gtctcgtttt gtgtcctgag aacttggctt ggcgaccgtc
     3601 aggtggggca gatataacag aaatgtaagt tgcaccttat attggtggct gaggtcctat
     3661 cgatgagtgc cagccctcag gggaactaag tcttgccttc ttttggttat ctttgggggt
     3721 ggctctggag cttgggagag tggtgtcctt tgcaccctca ttgggaatgc ctcttgcatc
     3781 catggggtct tccaatatgg ccaggaatat ttactgtttg tccccctgac aagatattta
     3841 aaaggcttgt ttaagtagct ctatggtcag aagttggcca aactgctgga cgctgatata
     3901 cagagcccgt taggaacttt ttaaaggctt tgtcccctaa gtcaaaatga agctatgtac
     3961 ccagagggaa agaaaaacat tccaaagaca gagctctaaa tctagagcgt aggaatctct
     4021 tgaattccat cttagttgaa gatcttctct ctgatctaaa gaagcaaata gaagataatg
     4081 tagttggatg ggctatgatg tcattcacgt tgcaacccaa ttccccgact gtccttgtct
     4141 tacagaccta gtctttacaa gcacagagat gcagctctag aggcagttca aagctcacct
     4201 gtcctttctg tcaatcccca gacatccctt cttcatctca acaggcttgc agacattgta
     4261 aaatacctgg atttaagaaa gaaaagtcct tcctggacga agtcccattt ttttccctgt
     4321 gcctttgagt tgtgcgtgtt ctacctggtc tccgagaatt cttacctagg ccagctctca
     4381 gaaacacaaa cttcaggcag gtaattctca ccagaaggaa aaaaaggtgg ggaaggctat
     4441 ttggagctta ggtgaatgaa aaaccttaag tgtcttctcc acaaatagta atgaaaagcg
     4501 ttagccatct gagcaggtaa ccctgcctta ctccaacttc cagaaacagg atttggataa
     4561 aagtgttctt ctataaacta gtaagttttg cattattgta cctgtctcat aggtaaaatt
     4621 ttaaaacaaa agctttacga tctctgcatc tgtctgtatg tttatctgtg tacattgtat
     4681 gtaatgtttt tctacctgag tggtattgcc aaaattaatt tgcaaaagag catattgaat
     4741 tggcttaaag caaaataagc gattatcaaa ttaagtattc taaaactctg aaatacagaa
     4801 acttaaccca aatgtttttc aagtttgcat gatctaggaa aaatctttag taaacaaaag
     4861 ctaacttaag tttgctggtt taattaaatt aaagtaggta tgttaaatat aatgcatatg
     4921 tacaactttt attctacctg ggtttattag tcaaataagt tcacgttaat ctgttacaaa
     4981 atttgtcacc aaggaagaga acttaagatg ttggctagct gtttaatgcc tcgagaaatt
     5041 ttcatgacta atctaaacag aattgttaag aacacatgaa caaatttctc actgggtaga
     5101 agctttttcc tgttgataag caactgcctc ttttgtagca aagaaattac ttcaaaacgt
     5161 catccctata tggggcgccc ccgtcatttc tgcacagtga ctgaggaact cattttactg
     5221 gccaggtaat ccgagaaccc tggagagtcc ttcttaggac tcggagaaaa gactaatgac
     5281 atcattaaaa cccaattagg aaaatttcct gagactttga ccaaggtgct gtcaccggtc
     5341 cttttgcacc taaggtcctt gccttttgaa aaacctaagc tcactcccga ggaaacagta
     5401 cctggcagac ccatgcgtct gcttcagtct ccatactgtg accctcaaat tgcccaacag
     5461 gacctattaa aaaaatggct agtcatctat tctctattcc tcctacaggt taaaaagctt
     5521 attacagcct gacactgaca cccctcatga cctacttcct ggagaatacg tctgctggaa
     5581 aagaccccaa ctaaaggatt cctgcttccc tcctcggaaa ggatcttttc tggtactgct
     5641 cgccagttcc tgcacagcta aattcgaagg catccggccc acctgaaagg agtaacagga
     5701 ccagaatgaa ccagcaaagc caccggtgat ctcacactta agatctcccg gcaccagaag
     5761 cagacgacct cggacataga cagacagcta tcccaagaca acgggccagg cctgtgtaac
     5821 ttaacttgat ttccgccact gttctcttta ctgtggaaat catgataggg gaagttaacc
     5881 agactcctcc acttatctgt tttctctccg ggttgcccgt gtcttccaga cgattgccaa
     5941 gggaggtaac ctttcagact ctgtatttgt catttaaaac tccgatctgt ctggaaggtt
     6001 ggagactccc tggtccttcc tgtaacctga tttttcttct atcaatcatc cttggtgcca
     6061 ccttaggcaa cagctgaagt cccttcgatg tcagctacag tgttaaactt ttgcagcccg
     6121 gtctctcagt gccttatttt tacctttctc cgatcataac tctccttgtc cagtctgaca
     6181 caaatgcctt gtaaaccgtg gtacatttgt gcccccatgt tctaaatcag atttcagagg
     6241 ctttgtcgct taccttctga gaggtgttac gctgcctagg tttattgttc agttacacgg
     6301 aaagcgttgc caactaagtg gtgataaatc ttcttgggtt gttagtattt taataattat
     6361 taatataatt aagtgttcta gaaattgtgt gaaattccta gagctctgat atgccttggt
     6421 ataacggtat cggtcataat tctggttatc ttaaaatatt gtctgtcaat cacagaaata
     6481 accaaatttc cttgtcaatt ccattataat gaactctcat cagatcttta gcactgggca
     6541 tttttaagtt cttttgtcat ttacagacag ttattgtttt actctgacgc ttttgcaaaa
     6601 gtgagattca cggcaaggaa cctaccaaga actcttgacc accacatggc tgccacatca
     6661 caaggggcca aaccgtgggt acgtgtttca caactgacga aggctccacc tgccttccgg
     6721 tcccgtgcag aaaagctgga gctctcaaat cagtcaaacc aacgagcaag agacgtagcc
     6781 accatcgaga tagacagact gactgcttcc tcccgagatg tcagatcaac agcgtgtctg
     6841 tctgtctttc cattcttcct tccctctctg accatcctct gcctagtctc acactgtgaa
     6901 ggtgtttatg attcttgctg tccatccttt ttgctttgct ctggcttgga aaggtaacgc
     6961 cactgttcac atatctatct aaggccatcg caaagggggg taaatctaac ctcaaagact
     7021 ttgagttatc acgatgccag tgattgcact gttctgtcca tcacagaccg ctccctgatt
     7081 tccaatgcct ccgtttctct ggaccaaacg gccagcccac ctttctgttg tgtcccactc
     7141 cctaaccctg gggatctact tccttgtctc tggttaacac cccggggagc cctgcatcca
     7201 ggctctgtac aaagaaaggg acgcgaggca agggaaagag gataaaacca cctgtgctgt
     7261 ccacaggccc ttcaggtgta caggcctcca cggctgtcac cttttggggc ccgagccaca
     7321 ggtggaaaca ggaattaccg ggaagcattc agtggttcaa aatctgcttc ctttggtgca
     7381 gccctgctcc gccggccagg agctgataca aatgaggcca cgaccaggag tctctcctta
     7441 cctcttgaag attccagaat ctgctggtaa agcaacagct gcccaatgaa aatccctaga
     7501 ctctctggcc agagttgttc ttgaaaatga gcgacgcctc tggttgagta tcctttagct
     7561 gaacaaggag atgtctgtgc tgtgacccgc accgcttgct gcgcctgggt caacacttcc
     7621 ggggaaggtg agactcagcc ccgggagact actgaacaaa ccagccaacg ggacctttct
     7681 ttggggatta ttctgcttat aatactacag cagtcaccgt actgtgctgt attcccgcaa
     7741 aagctttaaa tgcagctttg cagccactag ctaccaagca aatgatctcc ctcagaacag
     7801 aacagcagaa aaggcacgaa gagaatgacc gactgaaaga ccatgaaccc agtgccgtga
     7861 cctgtgaaga ccacacagcg attcagcaaa aaaacccggt aagagctcca aagccatagc
     7921 tgggagtagc gctaatgccc taaattttga tcacttctct taattacgct cagagtctga
     7981 tgcaaggggg tcactgttaa aaacaagaca gcagacccaa aatgaagttg cttaggctag
     8041 gttccatatc accaaaccga gacttcactt tatagtttca gcgcctccag aaaggaatct
     8101 ttaaccagtc aaatcgggac tcgccggatc agcacgtctg cccgacggac ccctgccgtc
     8161 ccctaacgga gagcgactgg gctacaacca acctgctttt tcacctggtg taacttcctc
     8221 gttcccgctc ctttctgcct gcatgtcttt cgtttcgtac agctcctttc tatctgccgg
     8281 cctggatgct gcctgattca tgaatcactg aaataaagcc agtaagctct ttcaaatata
     8341 ctcagttgaa ttcttttaac accatcttcc tctcaaaggc tcagcccctg gtttccgaat
     8401 cccccatctg ccagctcagg gcacttgcag taaaaattgt tccacgtctc cccacttcgg
     8461 gtcaggatct tgtcctaccc tacttttcag gctgaagtct cgctctttct ctacagcaaa
     8521 atgacactct gctgttcccc agacacccct gcttgtttct gcatctgtgc tgctttcgcc
     8581 cttgaactgg cctccaccct tcgagacccc tcctcgcacc ccgggccttg gaagggatcc
     8641 ctctcccctt ggaaaccttt tcgcattctg tttaaagtct cagggtattt aatacgtaag
     8701 tgctgcaaga atcatttggt gatggaataa acttaccact ttttttt
//
LOCUS       XM_032620706            2274 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X1, mRNA.
ACCESSION   XM_032620706
VERSION     XM_032620706.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2274
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 4 long SRA reads, 6
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116747986"
     CDS             168..1820
                     /gene="DET1"
                     /codon_start=1
                     /product="DET1 homolog isoform X1"
                     /protein_id="XP_032476597.1"
                     /db_xref="GeneID:116747986"
                     /translation="MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQ
                     NVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEG
                     EILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAA
                     YLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSH
                     NQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQ
                     RDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKM
                     QLLDENHLFIKYTSEDVVTLRVTDPSQASFFVVYNMVTTEVIAVFENTSDELLELFEN
                     FCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIVNAKYGGHTEAVRRLLGQLPI
                     SAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYARDSGLLKFEIQAGLLGR
                     PINHTVRRLVAFTFHPFEPFAISVQRTNAEYVVNFHMRHCCT"
     misc_feature    591..1808
                     /gene="DET1"
                     /note="De-etiolated protein 1 Det1; Region: Det1;
                     pfam09737"
                     /db_xref="CDD:462868"
ORIGIN      
        1 cttctcgctg caccgcactt ccgttggcta gcggaagcgg cagccggcag ctgcgggcat
       61 ctggtcctac agcatggcgg gggcggggct ggacgaggcg cgcgccgagc aggctgggga
      121 gcccctcgcc ccggcccttt gagcccggac cggacagaga tgtgataatg gatcatcatg
      181 tttccaccat caaacctcga agaatccaaa accaaaatgt cattcaccgc ctggaacgcc
      241 ggcggatcag ttcaggcaag gcaggcaccc actggcacca ggtccgagtg ttccaccaga
      301 atgtcttccc caacttcacg gttgtaaatg ttgaaaagcc gccttgtttc ttgcgtaaat
      361 tctcacctga tggacgctac ttcattgctt tctcttcaga ccagacatct ctcgaaatct
      421 atgagtacca gggctgccag gcagctgagg acctactgca gggctatgag ggggagatcc
      481 tgtccaatgg caatgaccag cggtcagtca acatccgtgg ccggctcttc gaacgctttt
      541 tcgtcctgct gcacattacc aatgtggcgg ccaatggcga gcacctgaac cgggagtgca
      601 gcctcttcac tgatgactgc cgctgtgtca tcgtgggctc agctgcctat ctcccagatg
      661 agcctcaccc tcctttttat gaggtatatc ggaacagtga gtccgtgacc cccaaccccc
      721 ggtcccccct ggaggactac tccctccata tcattgacct tcatactggc cgcttatgtg
      781 atacacgtac cttcaagtgt gacaaagtgg tcctgtcaca caaccaaggg ttgtacttgt
      841 ataagaacat cctggccatc ttgtcagtgc agcagcagac catccatgtc ttccaggtga
      901 ctcctgaagg cactttcatt gatgtgagga ccattggccg cttctgctat gaggatgacc
      961 tgctcactgt gtcagctgtt tttcctgagg tgcagcggga cagtcagaca ggcatggcca
     1021 atcctttcag ggatcccttc atcaactccc tgaaacaccg gctgctcgtg tacctttggc
     1081 gccgggcaga gcaggatggt agtgcaatgg ccaagaggcg cttcttccag tattttgacc
     1141 aactacggca gctgcgcatg tggaaaatgc agcttctgga tgaaaaccat ctgtttatca
     1201 agtatactag tgaggatgtt gtaaccctgc gggtcacaga tccatcacag gcatctttct
     1261 ttgtggtgta caatatggtg acaacagagg tgatcgctgt gtttgagaat acatcagatg
     1321 agcttttgga gctgtttgag aacttctgtg atctcttccg taacgctacc ctgcatagtg
     1381 aagtccagtt tccctgctca gcttccagca acaattttgc acggcagatc cagcgccggt
     1441 ttaaagacac tattgtaaat gccaagtatg gagggcacac ggaggcagta cgccggctgc
     1501 tgggtcagct ccccatcagc gcccagtctt acagtggtag cccctacctt gatttgtctc
     1561 tcttcagcta cgatgacaag tgggtgtcag tcatggagcg gcccaagact tgtggagatc
     1621 accctatcag gttctatgcc cgggactctg gtctgctcaa gtttgagatt caggcaggct
     1681 tactgggccg tcccatcaac cacacggtgc gacgccttgt tgccttcacc ttccaccctt
     1741 tcgagccttt tgctatctct gtgcagagga ctaacgctga gtatgttgtc aacttccata
     1801 tgcgacactg ctgcacgtag gtgcctcacc agagtgggtc atccggtctt ccaagactct
     1861 gcctccttca tatctcagtg gaccgtaaag cagaagctcc tgactctcag ccttgtcggt
     1921 tccagactgt atacctcaga tggggagagc caggtggctc agcctgacgg aatttttttg
     1981 tcgtacacag tacaacccga tcgacttaaa gtcctcttgc cttttccctg tgggaatgcc
     2041 caacattaat taagtccatt taagtttttt ttattttgca ttttattgct atgaagatga
     2101 gagcattaca cctctgcctc cttcatgtca cttctttggc attatggtat gcagcctgaa
     2161 gcaggtaaat cttgtttact catgagaagt gtgtacatct ttccacttag ccaatagtag
     2221 ggctgtcttt ataagaaaaa aaaaataaag ccttggtatt ttcttactta aata
//
LOCUS       XM_032620714            6452 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X2, mRNA.
ACCESSION   XM_032620714
VERSION     XM_032620714.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6452
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6452
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 96% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116747986"
     CDS             1058..2659
                     /gene="DET1"
                     /codon_start=1
                     /product="DET1 homolog isoform X2"
                     /protein_id="XP_032476605.1"
                     /db_xref="GeneID:116747986"
                     /translation="MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQ
                     NVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEG
                     EILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAA
                     YLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSH
                     NQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQ
                     RDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKM
                     QLLDENHLFIKYTSEDVVTLRVTDPSQLILPVTVRDCIRNCLLRPYQPSMASFFVVYN
                     MVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKD
                     TIVNAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDH
                     PIRYTIPASVAHCLRRLPAFSFSAS"
     misc_feature    1481..2593
                     /gene="DET1"
                     /note="De-etiolated protein 1 Det1; Region: Det1;
                     pfam09737"
                     /db_xref="CDD:462868"
ORIGIN      
        1 gcccgcccct gggtatcccc ttgccgttta ggaagccgtc agaaggaatt gagggttacg
       61 tgcacctgcc tgcccgggga aacagaccta gcagggagga aggtcttgct tagtaccgca
      121 cgagttagtg gcccagttca gtcaggcttt cttctttcgt tccatagata acgtacgagc
      181 gcatgcagtg gggcagccct agtgctaggc tctctgaaaa ctaaggtgac tgaagtagcc
      241 atggttatgt cctgcctgga gaggatagtt tacgggggag tcgaacatta aacacctaac
      301 catgccgctg aaagtacaaa ttcaaattgt ggcaatggct atggaaaaga tgaacagaaa
      361 aagtaatggt aaagcagcaa agatctcttt cggcaagggt gtcagagcag acttcctgaa
      421 cgagaggaca cttgagctac ggcttgagaa gtatggcaag ggccagagga aatatatgct
      481 ggtcagagcg aacagcacct gtggatattt gagttggtaa agaatgttca ggaaaggagg
      541 ctttcgatgg gtcaaatgct gtgatgggca tacaggatat aatgtttgtg taccggtcag
      601 gagttcacca tctagtgcca cagacataag taaaatgcag agatgaagtt gcaggcgtgg
      661 taagtttgct aagaaggagc ggtatggctg gtgtattggt gttttatctg gtgggaaagg
      721 ttaaggagga cttctctgag gaagtgatga ttaggctgat aacctgaaat aggagttaac
      781 tcggcaaagt gaagagaaga gcttttttta gattgaggtg aagagcatgt gccaaggttc
      841 agaggcagga ggtaggccac ttgaggaaga aatgattaga gtgaaatggg aaaagatgag
      901 gctggagagg cagcactgag cctttgaggc atctggttgg cacggcaagg attttgatcc
      961 gtatcattaa gagcaatgga aagatatttg ttttaatctg taggggaaag gatgtgatca
     1021 aaaaagcatt ttgaaaagat tgctctgaga tgtgataatg gatcatcatg tttccaccat
     1081 caaacctcga agaatccaaa accaaaatgt cattcaccgc ctggaacgcc ggcggatcag
     1141 ttcaggcaag gcaggcaccc actggcacca ggtccgagtg ttccaccaga atgtcttccc
     1201 caacttcacg gttgtaaatg ttgaaaagcc gccttgtttc ttgcgtaaat tctcacctga
     1261 tggacgctac ttcattgctt tctcttcaga ccagacatct ctcgaaatct atgagtacca
     1321 gggctgccag gcagctgagg acctactgca gggctatgag ggggagatcc tgtccaatgg
     1381 caatgaccag cggtcagtca acatccgtgg ccggctcttc gaacgctttt tcgtcctgct
     1441 gcacattacc aatgtggcgg ccaatggcga gcacctgaac cgggagtgca gcctcttcac
     1501 tgatgactgc cgctgtgtca tcgtgggctc agctgcctat ctcccagatg agcctcaccc
     1561 tcctttttat gaggtatatc ggaacagtga gtccgtgacc cccaaccccc ggtcccccct
     1621 ggaggactac tccctccata tcattgacct tcatactggc cgcttatgtg atacacgtac
     1681 cttcaagtgt gacaaagtgg tcctgtcaca caaccaaggg ttgtacttgt ataagaacat
     1741 cctggccatc ttgtcagtgc agcagcagac catccatgtc ttccaggtga ctcctgaagg
     1801 cactttcatt gatgtgagga ccattggccg cttctgctat gaggatgacc tgctcactgt
     1861 gtcagctgtt tttcctgagg tgcagcggga cagtcagaca ggcatggcca atcctttcag
     1921 ggatcccttc atcaactccc tgaaacaccg gctgctcgtg tacctttggc gccgggcaga
     1981 gcaggatggt agtgcaatgg ccaagaggcg cttcttccag tattttgacc aactacggca
     2041 gctgcgcatg tggaaaatgc agcttctgga tgaaaaccat ctgtttatca agtatactag
     2101 tgaggatgtt gtaaccctgc gggtcacaga tccatcacag ctgattctgc ctgtaacagt
     2161 tagagactgt ataaggaatt gtctcctaag accgtaccag ccatccatgg catctttctt
     2221 tgtggtgtac aatatggtga caacagaggt gatcgctgtg tttgagaata catcagatga
     2281 gcttttggag ctgtttgaga acttctgtga tctcttccgt aacgctaccc tgcatagtga
     2341 agtccagttt ccctgctcag cttccagcaa caattttgca cggcagatcc agcgccggtt
     2401 taaagacact attgtaaatg ccaagtatgg agggcacacg gaggcagtac gccggctgct
     2461 gggtcagctc cccatcagcg cccagtctta cagtggtagc ccctaccttg atttgtctct
     2521 cttcagctac gatgacaagt gggtgtcagt catggagcgg cccaagactt gtggagatca
     2581 ccctatcagg tacaccatcc ctgcttcagt tgcacactgc ctgaggaggt tgcctgcttt
     2641 ctctttctct gcttcttaaa catcatttca ctgtgactct gtccacttgt actcatgggt
     2701 tgaattcaga gggtaggctg tttctataat atggtgggta ctttgatcat tcaggtacta
     2761 atctcataaa ttaattagtt ctgctctttg cttctcatca aaacatcaaa ttcagataag
     2821 tgttgttccc ttttcagggt atccagagaa ggaaaccata cttttcaatt taataatcta
     2881 ataccatttc ttaacagtgt ttataattga gacttaaatt ttatccagct caaattattt
     2941 tatcctctca tgttacctaa tagaaacgat agcagagacg gtttgggaaa caggcaggtt
     3001 ttggagaaac tcatgcttcc tcacttggaa gaattttgga atgcagatca ctgtattatt
     3061 gctagaacct tgaaactaat ctcctgtaag taatgccttc ctcacgtatg tccaattcac
     3121 agacccgctt gtctgtgccg ggagcttggg tggttctgtg tgctataata ggtactaggg
     3181 agaggaactg gcaccactgc cactagtggg gttatttcaa gggaggtgtg ttcctggagc
     3241 cctgagctgg attttggaag gtctttttca catagaaata gtggtagata gtatttcata
     3301 atccagcttc attgtgtatt aaataggctt gtgtaacata ctctgaacac ttaatcacca
     3361 tttgtaatat atcctttgag aaattgcagt caggttccaa aagccagtta aaaaaatttt
     3421 tttattatgg aaattttttt tttttttttt tgcggtacgt gggcctctca ctattgtggc
     3481 ctctcccgtt gtggagcaca ggctctgaac gtgcaggctt agtggccatg gctcacaggc
     3541 ccagccgctc cacggcatgt gggatcttcc cggaccgggg cacgaacccg tgtcccctga
     3601 atcggcaggc agactctcaa ccactgcgcc accagggaag ccatatggaa atttttaaac
     3661 atattaaagt agaagagtat aatgaacctc cctgtaccca tcaccctgct tcaacagtta
     3721 tcacttcatg gtcagtgttg tttcatctct ttccaccacc acttctcccc tcccaactgc
     3781 caccctggac catcacatcc caggtgtcat agcatttcac ttgtaaatat ttcagtatga
     3841 atttctaaaa ggtaaggact taaacataca accttaatac cattattcca tcttatgaaa
     3901 attaacaaaa atatattaag atcatcgata tctggtgagt tttcacattt ccctgttgtc
     3961 ttgtgcatag tctttttaca gtttgttcca gtccggatct aaacaaggtg tgtatgttgt
     4021 atttggttgc tatcctctta agtctttttt attctatggg ttctgcttcc ctcttacttt
     4081 ctttgcagtg aaatagttga agaaaccagg ttgttcgtcc agtagtattc accatattct
     4141 agattttgct cattgcatct ctggcgtatt tactgccttt ctcattcccc catatttcct
     4201 gtaaactggt agttagattt aggagctcaa acagctcact ttaaattata agccctttgt
     4261 gtgctgggga ctatgtgggt aaggtgaatg tgtttttcac acatgaaagc agataattgg
     4321 cctcatttga tattgtcacg aagcacgaga tacatttctc tcctttttta cttccctgcc
     4381 tttctgattt gaaaagatta aacaaatctg gaaatgccat tgaccctgac ttaaaagatt
     4441 tttcttgtaa ttctttattt ttactttaaa atgtagggat ataaaagtca tttgtagagg
     4501 taatgccatt actctaacac tcattgtata ttccattcta gtctttgcca gtatgcatgt
     4561 ttacgtttac acagttgtaa tcatggttgg catgatactt tgtagcctgc ttttatttaa
     4621 taaacatttt tccatattgt tacatagtcc tcacagttac agtcctaatg gtggcatatt
     4681 attccatcaa gtagatgtac cataattgat ttaactattt ccctattact gagcattatt
     4741 ctctctgcat ttttacatta gagataatgc tgtagtaggc atctttattc atgtcactat
     4801 ttactgcatt taaattaaat tctgaggata taagttctta gaaatgggat tgttgagtca
     4861 aggggtatga atatctttac ggctagtata tatttgcttc ccaaaaggga aattatagag
     4921 ctctttattt cagagctctt tattttctag aacttccccc agttcagccc cgacgctgct
     4981 gatcatctct agttcccaag ttcacagggc acttattttg catgtgggaa aaaggcattt
     5041 atttaagtat tgggatggat ggaagcatct ttattcttac tgcgttagat gaaaaagtaa
     5101 aaactactta gtattttgta tttgtgtgtg aaaaagaaga accttctaaa ggaatttatt
     5161 cttaaaagtg aaaaactcaa atataggcct agatctgccc tgttctatag tagctactaa
     5221 cctcatgtag ctgttgagca ctgacatcac taacatgtga ctagtccaag ttgagatgtg
     5281 ctcaagtgtc aacacacatc agatttcaaa ggcttagtac aaaaaaaatt ttttttagta
     5341 tcttttatat tgattatagg ttaaaatgat aatattttag ataccaatac tgggttaaat
     5401 aaaatattat taaaattaat ttcacctttt actttgttta atgtggctac ctgaaaattt
     5461 aaaataacgt atgtggctca catttcattt ccagtcctgt actaggcaat cttgggcagg
     5521 tagctactgg aaaaggggag gctgtagtta aggctgtaac taagggtcat cttgggaaag
     5581 agaaatgacc cagtgactca ggacagcaca gggaagttca taatcaccct gcccgtaaag
     5641 tgagctgatc agacaaaggt gattttgcag ttccaataac ctggggctgc tgttagagga
     5701 gatgtcatca gtgaggttaa ataacgagtt ggcacgtttt cctgctgttc aggtttcaag
     5761 atggtggtca gtatctgtcc catcctctcc ttctctcttg ttctgtttag gttctatgcc
     5821 cgggactctg gtctgctcaa gtttgagatt caggcaggct tactgggccg tcccatcaac
     5881 cacacggtgc gacgccttgt tgccttcacc ttccaccctt tcgagccttt tgctatctct
     5941 gtgcagagga ctaacgctga gtatgttgtc aacttccata tgcgacactg ctgcacgtag
     6001 gtgcctcacc agagtgggtc atccggtctt ccaagactct gcctccttca tatctcagtg
     6061 gaccgtaaag cagaagctcc tgactctcag ccttgtcggt tccagactgt atacctcaga
     6121 tggggagagc caggtggctc agcctgacgg aatttttttg tcgtacacag tacaacccga
     6181 tcgacttaaa gtcctcttgc cttttccctg tgggaatgcc caacattaat taagtccatt
     6241 taagtttttt ttattttgca ttttattgct atgaagatga gagcattaca cctctgcctc
     6301 cttcatgtca cttctttggc attatggtat gcagcctgaa gcaggtaaat cttgtttact
     6361 catgagaagt gtgtacatct ttccacttag ccaatagtag ggctgtcttt ataagaaaaa
     6421 aaaaataaag ccttggtatt ttcttactta aa
//
LOCUS       XM_032620722            3185 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X3, mRNA.
ACCESSION   XM_032620722
VERSION     XM_032620722.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..3185
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747986"
     CDS             132..1730
                     /gene="DET1"
                     /codon_start=1
                     /product="DET1 homolog isoform X3"
                     /protein_id="XP_032476613.1"
                     /db_xref="GeneID:116747986"
                     /translation="MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQ
                     NVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEG
                     EILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAA
                     YLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSH
                     NQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQ
                     RDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKM
                     QLLDENHLFIKYTSEDVVTLRVTDPSQLILPVTVRDCIRNCLLRPYQPSMASFFVVYN
                     MVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKD
                     TIVNAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDH
                     PIRANIPLSGWAVISLASALLMDI"
     misc_feature    555..1664
                     /gene="DET1"
                     /note="De-etiolated protein 1 Det1; Region: Det1;
                     pfam09737"
                     /db_xref="CDD:462868"
ORIGIN      
        1 gcggcagccg gcagctgcgg gcatctggtc ctacagcatg gcgggggcgg ggctggacga
       61 ggcgcgcgcc gagcaggctg gggagcccct cgccccggcc ctttgagccc ggaccggaca
      121 gagatgtgat aatggatcat catgtttcca ccatcaaacc tcgaagaatc caaaaccaaa
      181 atgtcattca ccgcctggaa cgccggcgga tcagttcagg caaggcaggc acccactggc
      241 accaggtccg agtgttccac cagaatgtct tccccaactt cacggttgta aatgttgaaa
      301 agccgccttg tttcttgcgt aaattctcac ctgatggacg ctacttcatt gctttctctt
      361 cagaccagac atctctcgaa atctatgagt accagggctg ccaggcagct gaggacctac
      421 tgcagggcta tgagggggag atcctgtcca atggcaatga ccagcggtca gtcaacatcc
      481 gtggccggct cttcgaacgc tttttcgtcc tgctgcacat taccaatgtg gcggccaatg
      541 gcgagcacct gaaccgggag tgcagcctct tcactgatga ctgccgctgt gtcatcgtgg
      601 gctcagctgc ctatctccca gatgagcctc accctccttt ttatgaggta tatcggaaca
      661 gtgagtccgt gacccccaac ccccggtccc ccctggagga ctactccctc catatcattg
      721 accttcatac tggccgctta tgtgatacac gtaccttcaa gtgtgacaaa gtggtcctgt
      781 cacacaacca agggttgtac ttgtataaga acatcctggc catcttgtca gtgcagcagc
      841 agaccatcca tgtcttccag gtgactcctg aaggcacttt cattgatgtg aggaccattg
      901 gccgcttctg ctatgaggat gacctgctca ctgtgtcagc tgtttttcct gaggtgcagc
      961 gggacagtca gacaggcatg gccaatcctt tcagggatcc cttcatcaac tccctgaaac
     1021 accggctgct cgtgtacctt tggcgccggg cagagcagga tggtagtgca atggccaaga
     1081 ggcgcttctt ccagtatttt gaccaactac ggcagctgcg catgtggaaa atgcagcttc
     1141 tggatgaaaa ccatctgttt atcaagtata ctagtgagga tgttgtaacc ctgcgggtca
     1201 cagatccatc acagctgatt ctgcctgtaa cagttagaga ctgtataagg aattgtctcc
     1261 taagaccgta ccagccatcc atggcatctt tctttgtggt gtacaatatg gtgacaacag
     1321 aggtgatcgc tgtgtttgag aatacatcag atgagctttt ggagctgttt gagaacttct
     1381 gtgatctctt ccgtaacgct accctgcata gtgaagtcca gtttccctgc tcagcttcca
     1441 gcaacaattt tgcacggcag atccagcgcc ggtttaaaga cactattgta aatgccaagt
     1501 atggagggca cacggaggca gtacgccggc tgctgggtca gctccccatc agcgcccagt
     1561 cttacagtgg tagcccctac cttgatttgt ctctcttcag ctacgatgac aagtgggtgt
     1621 cagtcatgga gcggcccaag acttgtggag atcaccctat cagggctaac attccattat
     1681 ccggatgggc tgtaatttcc ttggctagcg ccctgttgat ggacatttag gttccaatct
     1741 tcttccgtta ctcgccgtgc ctcacgtatg gaagatttca cttctggaat gatggagacc
     1801 gcctgtgctt cctcttctcc acgtgcccct ccagatccat tctgctgcct gcgaggctgg
     1861 ccctccaggg atggcaccac cctgctcccc tgctctggtt cttgttgggc tcagccactg
     1921 ggcacgtcag gtagccagag gctggagcca tcagcgtgtt tctgtcctct ccctctgcgg
     1981 gccacggctt tggcagaggc cgcatccctg tgactagaac gccgccaggt tctgggggct
     2041 tgtccctccc cggctcctgc tagtccttga gtgctgcagc ctttttatcc cgaccctgcc
     2101 catgcctctc taaaggactt tctttaagct tctcttttga accgcctgtt tcttgctctg
     2161 ttaaactaat tgctccaggc cctctgtcca cccgaataaa ggccaaacca tatcacatca
     2221 cagagcggtt tctcacgagc cccatgtttt ttatgcaacg tgtttatata tagttttaaa
     2281 gtgtaactcc ttccatcggt ggtttcgaca caagaagcct ccagttgggt tcctttagtc
     2341 attggtcaca agttaacctt cataggtcct gctaaggatg gaagagaagg cagtagagag
     2401 acattttcct tctaaattca cattcgggtc ttggtccctt ccccttctct aacctgtgta
     2461 acgcagcagc ttccctacat aagagggcat ttgtgcattt actacacggg gttcaggcaa
     2521 atcgcaatgc tcggctggct gtgcaggcgt ggagcccctc ggtggtcggc aggcccttcc
     2581 tgcagactcc cctccgacag acatgcatct tttcatctgg taatgctctc atccttggtc
     2641 ctctgtccaa ggaagacggg ggatctctcc tgctgggtcc ccagaggccc cacctttggc
     2701 ttgtgtgtgg catccaggga ccccagagtc ccgactgagc agtcagtgct gcctgggagc
     2761 ctggctgagc ccgctgtgtc agcaccaccc ggactcgctt tcctgcacgt ctcaatttgg
     2821 gctctgctct cgcccatccc tccacctccc ctaatttcta gagaaccctg ttttatacca
     2881 ctctaccctc cctcctttag ggtcatgcag tctcggcatc atgctgatgc ccacggagtg
     2941 tgtaacgcag ccttgactgt ggggaatctc tgatggttcc aggaccactc tcccgtactg
     3001 ttagggctaa ctaactttag acacgcctgc taacagtgaa acctgctatc agaatactcc
     3061 agaggtagga ggcacaaagc tctcaatttg gggccaaatt acaagttagt aagaaaagtt
     3121 cctaatgagc tctggaaccc ttagttaagg ggctaaaaag gaaatatgtg aaaccaaaga
     3181 ggaag
//
LOCUS       XM_032620731            4723 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X4, mRNA.
ACCESSION   XM_032620731
VERSION     XM_032620731.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4723
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4723
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116747986"
     CDS             132..1730
                     /gene="DET1"
                     /codon_start=1
                     /product="DET1 homolog isoform X3"
                     /protein_id="XP_032476622.1"
                     /db_xref="GeneID:116747986"
                     /translation="MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQ
                     NVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEG
                     EILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAA
                     YLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSH
                     NQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQ
                     RDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKM
                     QLLDENHLFIKYTSEDVVTLRVTDPSQLILPVTVRDCIRNCLLRPYQPSMASFFVVYN
                     MVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKD
                     TIVNAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDH
                     PIRANIPLSGWAVISLASALLMDI"
     misc_feature    555..1664
                     /gene="DET1"
                     /note="De-etiolated protein 1 Det1; Region: Det1;
                     pfam09737"
                     /db_xref="CDD:462868"
ORIGIN      
        1 gcggcagccg gcagctgcgg gcatctggtc ctacagcatg gcgggggcgg ggctggacga
       61 ggcgcgcgcc gagcaggctg gggagcccct cgccccggcc ctttgagccc ggaccggaca
      121 gagatgtgat aatggatcat catgtttcca ccatcaaacc tcgaagaatc caaaaccaaa
      181 atgtcattca ccgcctggaa cgccggcgga tcagttcagg caaggcaggc acccactggc
      241 accaggtccg agtgttccac cagaatgtct tccccaactt cacggttgta aatgttgaaa
      301 agccgccttg tttcttgcgt aaattctcac ctgatggacg ctacttcatt gctttctctt
      361 cagaccagac atctctcgaa atctatgagt accagggctg ccaggcagct gaggacctac
      421 tgcagggcta tgagggggag atcctgtcca atggcaatga ccagcggtca gtcaacatcc
      481 gtggccggct cttcgaacgc tttttcgtcc tgctgcacat taccaatgtg gcggccaatg
      541 gcgagcacct gaaccgggag tgcagcctct tcactgatga ctgccgctgt gtcatcgtgg
      601 gctcagctgc ctatctccca gatgagcctc accctccttt ttatgaggta tatcggaaca
      661 gtgagtccgt gacccccaac ccccggtccc ccctggagga ctactccctc catatcattg
      721 accttcatac tggccgctta tgtgatacac gtaccttcaa gtgtgacaaa gtggtcctgt
      781 cacacaacca agggttgtac ttgtataaga acatcctggc catcttgtca gtgcagcagc
      841 agaccatcca tgtcttccag gtgactcctg aaggcacttt cattgatgtg aggaccattg
      901 gccgcttctg ctatgaggat gacctgctca ctgtgtcagc tgtttttcct gaggtgcagc
      961 gggacagtca gacaggcatg gccaatcctt tcagggatcc cttcatcaac tccctgaaac
     1021 accggctgct cgtgtacctt tggcgccggg cagagcagga tggtagtgca atggccaaga
     1081 ggcgcttctt ccagtatttt gaccaactac ggcagctgcg catgtggaaa atgcagcttc
     1141 tggatgaaaa ccatctgttt atcaagtata ctagtgagga tgttgtaacc ctgcgggtca
     1201 cagatccatc acagctgatt ctgcctgtaa cagttagaga ctgtataagg aattgtctcc
     1261 taagaccgta ccagccatcc atggcatctt tctttgtggt gtacaatatg gtgacaacag
     1321 aggtgatcgc tgtgtttgag aatacatcag atgagctttt ggagctgttt gagaacttct
     1381 gtgatctctt ccgtaacgct accctgcata gtgaagtcca gtttccctgc tcagcttcca
     1441 gcaacaattt tgcacggcag atccagcgcc ggtttaaaga cactattgta aatgccaagt
     1501 atggagggca cacggaggca gtacgccggc tgctgggtca gctccccatc agcgcccagt
     1561 cttacagtgg tagcccctac cttgatttgt ctctcttcag ctacgatgac aagtgggtgt
     1621 cagtcatgga gcggcccaag acttgtggag atcaccctat cagggctaac attccattat
     1681 ccggatgggc tgtaatttcc ttggctagcg ccctgttgat ggacatttag gttccaatct
     1741 tcttccgtta ctcgccgtgc ctcaatgcct acacacctac cttcatcgcc tgcaaatgag
     1801 cttgactgca gccttctaca cgcccacctc cctttctcca tcacatcttg tgtggccaca
     1861 tgttttttgc ctccttcctt ttctcccaat cctttggtaa gattttaccc ccattcgtct
     1921 tcctatcatg acccaccaca ccaactaagc catatccggt aacctggggc aatgctgctt
     1981 tgccagtttc caatcctaaa gatacctggt gatcctgctg ggatgaactg aggggatcgt
     2041 cctttcactc aaacaccaat aacattcatg cctcgtatgg aacttccttc tgactaattc
     2101 agccatgtgc ctgtcccact ttcttggtct gtgaactcca agacagggat gacagtgcca
     2161 tatctgttct ccctgtgctc agcctgtgtt tgtgcaatag cccatgtttg ttcactttgg
     2221 ttgaatagac ttttctgctt tggtagtgac cactccatca ctgtgggctg ataatactca
     2281 gatttaaaaa gcaatgtatc tatccagggt aggaaaaaat gactagaaag aaagaataaa
     2341 ggagtccggg ggaaggcata tatgcattaa atgcctttta atttaatatg cattaaaaaa
     2401 aatggacata tgagagtcag gttgcaggca gaggcgattg caaaatggtt tctcctaaac
     2461 tgctgagtta tattctgcca gcatccaggt actctactgt taaacaggtt tattttggtg
     2521 gtgaaggtat agcttggtgt cgggtgatga ccttggccaa aagaagggaa aacattgcat
     2581 ctatgctgaa aggagaaaaa ttatatttgc ctttttgcct gcagacgaga gaagagaggg
     2641 gagaggggag gagaggcttt ccttatgcag ctagtcctgg gccaccagct ttgtgctttg
     2701 atgtactcat agcaataaca caaggccctg ctgccaggaa acaaggaagt gtgttgtcac
     2761 acaagttgat gccaacactc tgcttgtgca aatactcagg acccagtgcc aggctctgca
     2821 tcttctctgc cagggggaag tgcaagcaca cggtcacctg tgtctcggga ccgagaggct
     2881 ggcttcagag aagggcttgt ggcagcaggg gaaagggcag cctggcattt agatgaacga
     2941 taactgcctt aagtggtcag tgaaggtcct gccctgagga ggggccagtc tctgaggcca
     3001 agaccccacg attaagaggt gatagaatct aagagagcac aagttcactg gcctcttaga
     3061 gcctggacgc agcagggcac tgaggctccc agcagcaaag ctgtgtgcgt tccccctggg
     3121 cgccctgtcg acggtgctcc ccccacctgg ctcccggcgg tggtgccagg cttccatttc
     3181 tggccctaag accattgatc ctttagggtc ccctgtgtcc tgtccacttg taggccctct
     3241 caggcagtac cttccttttc gatgctctct tgggaataaa ataacacttt ctaaaacgac
     3301 agcgtatgga agatttcact tctggaatga tggagaccgc ctgtgcttcc tcttctccac
     3361 gtgcccctcc agatccattc tgctgcctgc gaggctggcc ctccagggat ggcaccaccc
     3421 tgctcccctg ctctggttct tgttgggctc agccactggg cacgtcaggt agccagaggc
     3481 tggagccatc agcgtgtttc tgtcctctcc ctctgcgggc cacggctttg gcagaggccg
     3541 catccctgtg actagaacgc cgccaggttc tgggggcttg tccctccccg gctcctgcta
     3601 gtccttgagt gctgcagcct ttttatcccg accctgccca tgcctctcta aaggactttc
     3661 tttaagcttc tcttttgaac cgcctgtttc ttgctctgtt aaactaattg ctccaggccc
     3721 tctgtccacc cgaataaagg ccaaaccata tcacatcaca gagcggtttc tcacgagccc
     3781 catgtttttt atgcaacgtg tttatatata gttttaaagt gtaactcctt ccatcggtgg
     3841 tttcgacaca agaagcctcc agttgggttc ctttagtcat tggtcacaag ttaaccttca
     3901 taggtcctgc taaggatgga agagaaggca gtagagagac attttccttc taaattcaca
     3961 ttcgggtctt ggtcccttcc ccttctctaa cctgtgtaac gcagcagctt ccctacataa
     4021 gagggcattt gtgcatttac tacacggggt tcaggcaaat cgcaatgctc ggctggctgt
     4081 gcaggcgtgg agcccctcgg tggtcggcag gcccttcctg cagactcccc tccgacagac
     4141 atgcatcttt tcatctggta atgctctcat ccttggtcct ctgtccaagg aagacggggg
     4201 atctctcctg ctgggtcccc agaggcccca cctttggctt gtgtgtggca tccagggacc
     4261 ccagagtccc gactgagcag tcagtgctgc ctgggagcct ggctgagccc gctgtgtcag
     4321 caccacccgg actcgctttc ctgcacgtct caatttgggc tctgctctcg cccatccctc
     4381 cacctcccct aatttctaga gaaccctgtt ttataccact ctaccctccc tcctttaggg
     4441 tcatgcagtc tcggcatcat gctgatgccc acggagtgtg taacgcagcc ttgactgtgg
     4501 ggaatctctg atggttccag gaccactctc ccgtactgtt agggctaact aactttagac
     4561 acgcctgcta acagtgaaac ctgctatcag aatactccag aggtaggagg cacaaagctc
     4621 tcaatttggg gccaaattac aagttagtaa gaaaagttcc taatgagctc tggaaccctt
     4681 agttaagggg ctaaaaagga aatatgtgaa accaaagagg aag
//
LOCUS       XM_032620741            5730 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X5, mRNA.
ACCESSION   XM_032620741
VERSION     XM_032620741.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5730
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5730
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747986"
     CDS             132..1730
                     /gene="DET1"
                     /codon_start=1
                     /product="DET1 homolog isoform X3"
                     /protein_id="XP_032476632.1"
                     /db_xref="GeneID:116747986"
                     /translation="MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQ
                     NVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEG
                     EILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAA
                     YLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSH
                     NQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQ
                     RDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKM
                     QLLDENHLFIKYTSEDVVTLRVTDPSQLILPVTVRDCIRNCLLRPYQPSMASFFVVYN
                     MVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKD
                     TIVNAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDH
                     PIRANIPLSGWAVISLASALLMDI"
     misc_feature    555..1664
                     /gene="DET1"
                     /note="De-etiolated protein 1 Det1; Region: Det1;
                     pfam09737"
                     /db_xref="CDD:462868"
ORIGIN      
        1 gcggcagccg gcagctgcgg gcatctggtc ctacagcatg gcgggggcgg ggctggacga
       61 ggcgcgcgcc gagcaggctg gggagcccct cgccccggcc ctttgagccc ggaccggaca
      121 gagatgtgat aatggatcat catgtttcca ccatcaaacc tcgaagaatc caaaaccaaa
      181 atgtcattca ccgcctggaa cgccggcgga tcagttcagg caaggcaggc acccactggc
      241 accaggtccg agtgttccac cagaatgtct tccccaactt cacggttgta aatgttgaaa
      301 agccgccttg tttcttgcgt aaattctcac ctgatggacg ctacttcatt gctttctctt
      361 cagaccagac atctctcgaa atctatgagt accagggctg ccaggcagct gaggacctac
      421 tgcagggcta tgagggggag atcctgtcca atggcaatga ccagcggtca gtcaacatcc
      481 gtggccggct cttcgaacgc tttttcgtcc tgctgcacat taccaatgtg gcggccaatg
      541 gcgagcacct gaaccgggag tgcagcctct tcactgatga ctgccgctgt gtcatcgtgg
      601 gctcagctgc ctatctccca gatgagcctc accctccttt ttatgaggta tatcggaaca
      661 gtgagtccgt gacccccaac ccccggtccc ccctggagga ctactccctc catatcattg
      721 accttcatac tggccgctta tgtgatacac gtaccttcaa gtgtgacaaa gtggtcctgt
      781 cacacaacca agggttgtac ttgtataaga acatcctggc catcttgtca gtgcagcagc
      841 agaccatcca tgtcttccag gtgactcctg aaggcacttt cattgatgtg aggaccattg
      901 gccgcttctg ctatgaggat gacctgctca ctgtgtcagc tgtttttcct gaggtgcagc
      961 gggacagtca gacaggcatg gccaatcctt tcagggatcc cttcatcaac tccctgaaac
     1021 accggctgct cgtgtacctt tggcgccggg cagagcagga tggtagtgca atggccaaga
     1081 ggcgcttctt ccagtatttt gaccaactac ggcagctgcg catgtggaaa atgcagcttc
     1141 tggatgaaaa ccatctgttt atcaagtata ctagtgagga tgttgtaacc ctgcgggtca
     1201 cagatccatc acagctgatt ctgcctgtaa cagttagaga ctgtataagg aattgtctcc
     1261 taagaccgta ccagccatcc atggcatctt tctttgtggt gtacaatatg gtgacaacag
     1321 aggtgatcgc tgtgtttgag aatacatcag atgagctttt ggagctgttt gagaacttct
     1381 gtgatctctt ccgtaacgct accctgcata gtgaagtcca gtttccctgc tcagcttcca
     1441 gcaacaattt tgcacggcag atccagcgcc ggtttaaaga cactattgta aatgccaagt
     1501 atggagggca cacggaggca gtacgccggc tgctgggtca gctccccatc agcgcccagt
     1561 cttacagtgg tagcccctac cttgatttgt ctctcttcag ctacgatgac aagtgggtgt
     1621 cagtcatgga gcggcccaag acttgtggag atcaccctat cagggctaac attccattat
     1681 ccggatgggc tgtaatttcc ttggctagcg ccctgttgat ggacatttag gttccaatct
     1741 tcttccgtta ctcgccgtgc ctcacatgtg aggacacaac gagaagccag ccatctgcaa
     1801 cttggaagag ctgtcactag aacccgatcc tgctggcaca ctgatttctg acttccagtc
     1861 tcagaactgt gagaaataaa tgccgtttaa gccacccagt ttgtggtatt ttgttatagt
     1921 ggcctgagct gactaacaga agctccataa tctgagggtg ctaagtgtca tccagaggaa
     1981 aggtggcata ttttcctcct agtatcttcc ctgtagccag tgtttaatta gattcagggt
     2041 cctttctggc ttcttctttt tttttttccc ctaagaaatt agattttcac atcaggtaat
     2101 ttttaatgat ttttcattgg taaagtttca aatatacaca aaagtggata gaataatgtc
     2161 tgaactccca tggactcacc attcagcttc aacaattact aactcatatc caatttggtt
     2221 tcacctataa accctgtttc tacacccctc tatcccctaa ctaatggatt attttgaagc
     2281 aaatcttaga cccatcattt catctgtaaa tatttcagta tatatgtcta aaagataagg
     2341 actctttaac aagttaaatt aaaattaaga ataacttcaa gaaatcctta gatacgcttt
     2401 ccatttccct cttgatcact gcccagtttc ctggtctgaa gagctccctg agaactcacc
     2461 acagagggaa gtagagagtg gttatgggga gacctgctgg agctggccct gggctcaggc
     2521 cacctgctgt tggcctggct acggctgcca tttccctacc acggcttctt gggttttcta
     2581 cactgaacag agtagaaata gacaagagaa tggcttgtcc ctgagacaac ctcaataaaa
     2641 atctacagag tgggccacag acccttaaaa aagcaaacga acaaagagag cttacctatg
     2701 tccttagcaa cctgagaaga gaggaaaatc cagaggctct cattctgagc ttaccagatg
     2761 aaagctgaaa tgcatcctat ggcacctcgc ctgtgctcac cctctagccc tgactaccaa
     2821 cagtctcttg tattgttctc taaattgctt cataggcgac tgttgaccaa acaccaatcc
     2881 catctccaag tgggggctgg tgtgcaaaga tgttactgat gtcagcaagg tttctgttgc
     2941 caacacacag ttgggaactt acccagcact gtctgaaagc cacacagaac gctagtcttc
     3001 caaccttgtg cagccctaca aaggcagagg tcggtgcacg gtggcccaaa gcgagtactt
     3061 taaagcgacc cttatttggt ggtttccatt ttgcttagtt agtaaatcat atattctgaa
     3121 ataatctctc tcatttatta atcacccatc cccagtacta acacttaaca aatactttca
     3181 cagagggact ttcaggccct aaaatatact cttctccaac tcttgagcag aaccaggaaa
     3241 tacaattccc aaggacagca atgaaatctt atgaatggga tatgcctaac ctagttcaca
     3301 ttttcatgaa atctgaacaa actatataaa gagagaggtg gtctccccaa accaggaggg
     3361 agcctggggg aacctctgca tcagcatctg cgtgcagaac gtggcagcct gactcgtccg
     3421 ctccctctga aggggaaaga agcccactct agccctacca ggtgctccct tccctgctta
     3481 cttgttgtat gatgctttga tgtgtgcgat tgggatctcc tcaaatttct ttcctgccca
     3541 cctcagagaa ctctcttgtc ctggaattgg agggtaaatg ctgcaattag aagaaaaatt
     3601 ttaggtaaag ttgttctgat ttttttttta attaaaaaaa attacaaggt ttaaaaaaag
     3661 ccaccagtac aaactcataa taagaaacag cagctctctg cctcaacctg ctcctgaggt
     3721 cactgccccc gacccttctg gcgctgctgc cacatctgtg gcccaaagcg agtgcttcag
     3781 cacggtgctt cagcagccat ttcctgagtt gctgactcta gacaaagcta gtgactttct
     3841 gctgggagga aagagaattt aatccatgct ccccatcttc ccctgttcct tctagtgtaa
     3901 tcagatcact ctccagtcct ctataagcta ctctttctgc attaaaaaaa ataaagtcga
     3961 atctctattt cttgttttat caaccacaga tatcttgact atattgttgt ctgtttgtac
     4021 aaacaatatg atttttcata tcatattgat aagacaaaat tatcttaata aaaaagacaa
     4081 aattatctta ctaatactta taaaaatcat tattattaaa agaaaatccc tggaatagag
     4141 gtcagcaaac tttttctgta aagggccaga tagtaaatat tttaggtttt gctggccgta
     4201 aaatttctgt tgcaactact caactttgcc actgtggtgc aaaaacagct acagacaaca
     4261 gtaagttaat aggtgtgact actgtccaat aagaaacagg aaactggcca gatctaggta
     4321 ggggccaact tgccaacccc tatcctagac cagcggttgt ccatgctggc tgaacagcag
     4381 gatcacgtga ttctgatgct tacactccac cccagacttc cggatggggc ctgagaatcc
     4441 atttctgaag tagcccaagt gagtcagaat gtgaactcag ggtttagcac actggcctag
     4501 acatcatgtt gagttcaaga cccctctcta tctcagtccg atctgtcctc tggctgtctc
     4561 tcggtcagga cttcattttc aggtggagaa actgagtaca aataggggaa cagggttaac
     4621 aagggaagcc aggccttggg tcgaggggct ctaccttggt ccagagctct gctcaccacc
     4681 tgcgctattt tttattttag actcgagcaa acctgctgct gcaccctgct tacacgtaga
     4741 gatcagatca gtgtttgtat cccctcagcc acctgaacta caacgggttc tgatttagag
     4801 aatgcactgt tagctgagca ttatcctcct gactggcttc cctagagaga tttaaaaaaa
     4861 acaaaacagt aaacacagtg gtattcaaga gttacaagtg tattctttcc tgcttggcct
     4921 gatcttagag atgatttagc atctcagcag gttgccagct tatcagccta cactgaggtg
     4981 gaatgtggac gaggctctga gatgacatta atatttaaaa cattatcatt tccccattga
     5041 taatttcccc tattgacttg tgggccaaaa acttaagcct tctaaagtct gaatatacca
     5101 gcataatgcc ttttatatag ggcaagattt ttgaactagg aaggatttgg agcttgaacc
     5161 atttaactga aggcacagac aagatcaagc ttttaagcct cccaggtcca atgtacaaac
     5221 gaacaagtgg ttcaccgcga ggcagcccag aaacaggaaa gacaaagctt tctgccgctg
     5281 ttctgctgcc tcttcatacc catcctcaaa ccaggcccgc acacacggca tctcttgcaa
     5341 atggctgaca aggactgaaa atagcctgca cagttgggta gagaaaaata cacagttagt
     5401 gcagtagtac ctactgtctc tctctctctc tctctctctc tctatcacag tttcttgacc
     5461 tcagtactac tgacattttg ggcaagagaa ttctctgaag gggggctgtc ctgcacactg
     5521 tggggtattt agcaacatcc ctggcctcta cccaactaga cattgttcct caagttgtga
     5581 caaccaaaaa tgtcttcaaa catcgctaaa agtccccttg gaggcacagc cgccccaggc
     5641 tgaggaccgc tgctttactt taatgacttc taacatccag tgggccctca ttgctggcaa
     5701 tcatacagcg catccacagt tcaattaccc
//
LOCUS       XM_032620748            2142 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X6, mRNA.
ACCESSION   XM_032620748
VERSION     XM_032620748.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2142
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116747986"
     CDS             132..1730
                     /gene="DET1"
                     /codon_start=1
                     /product="DET1 homolog isoform X3"
                     /protein_id="XP_032476639.1"
                     /db_xref="GeneID:116747986"
                     /translation="MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQ
                     NVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEG
                     EILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAA
                     YLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSH
                     NQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQ
                     RDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKM
                     QLLDENHLFIKYTSEDVVTLRVTDPSQLILPVTVRDCIRNCLLRPYQPSMASFFVVYN
                     MVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKD
                     TIVNAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDH
                     PIRANIPLSGWAVISLASALLMDI"
     misc_feature    555..1664
                     /gene="DET1"
                     /note="De-etiolated protein 1 Det1; Region: Det1;
                     pfam09737"
                     /db_xref="CDD:462868"
ORIGIN      
        1 gcggcagccg gcagctgcgg gcatctggtc ctacagcatg gcgggggcgg ggctggacga
       61 ggcgcgcgcc gagcaggctg gggagcccct cgccccggcc ctttgagccc ggaccggaca
      121 gagatgtgat aatggatcat catgtttcca ccatcaaacc tcgaagaatc caaaaccaaa
      181 atgtcattca ccgcctggaa cgccggcgga tcagttcagg caaggcaggc acccactggc
      241 accaggtccg agtgttccac cagaatgtct tccccaactt cacggttgta aatgttgaaa
      301 agccgccttg tttcttgcgt aaattctcac ctgatggacg ctacttcatt gctttctctt
      361 cagaccagac atctctcgaa atctatgagt accagggctg ccaggcagct gaggacctac
      421 tgcagggcta tgagggggag atcctgtcca atggcaatga ccagcggtca gtcaacatcc
      481 gtggccggct cttcgaacgc tttttcgtcc tgctgcacat taccaatgtg gcggccaatg
      541 gcgagcacct gaaccgggag tgcagcctct tcactgatga ctgccgctgt gtcatcgtgg
      601 gctcagctgc ctatctccca gatgagcctc accctccttt ttatgaggta tatcggaaca
      661 gtgagtccgt gacccccaac ccccggtccc ccctggagga ctactccctc catatcattg
      721 accttcatac tggccgctta tgtgatacac gtaccttcaa gtgtgacaaa gtggtcctgt
      781 cacacaacca agggttgtac ttgtataaga acatcctggc catcttgtca gtgcagcagc
      841 agaccatcca tgtcttccag gtgactcctg aaggcacttt cattgatgtg aggaccattg
      901 gccgcttctg ctatgaggat gacctgctca ctgtgtcagc tgtttttcct gaggtgcagc
      961 gggacagtca gacaggcatg gccaatcctt tcagggatcc cttcatcaac tccctgaaac
     1021 accggctgct cgtgtacctt tggcgccggg cagagcagga tggtagtgca atggccaaga
     1081 ggcgcttctt ccagtatttt gaccaactac ggcagctgcg catgtggaaa atgcagcttc
     1141 tggatgaaaa ccatctgttt atcaagtata ctagtgagga tgttgtaacc ctgcgggtca
     1201 cagatccatc acagctgatt ctgcctgtaa cagttagaga ctgtataagg aattgtctcc
     1261 taagaccgta ccagccatcc atggcatctt tctttgtggt gtacaatatg gtgacaacag
     1321 aggtgatcgc tgtgtttgag aatacatcag atgagctttt ggagctgttt gagaacttct
     1381 gtgatctctt ccgtaacgct accctgcata gtgaagtcca gtttccctgc tcagcttcca
     1441 gcaacaattt tgcacggcag atccagcgcc ggtttaaaga cactattgta aatgccaagt
     1501 atggagggca cacggaggca gtacgccggc tgctgggtca gctccccatc agcgcccagt
     1561 cttacagtgg tagcccctac cttgatttgt ctctcttcag ctacgatgac aagtgggtgt
     1621 cagtcatgga gcggcccaag acttgtggag atcaccctat cagggctaac attccattat
     1681 ccggatgggc tgtaatttcc ttggctagcg ccctgttgat ggacatttag gttccaatct
     1741 tcttccgtta ctcgccgtgc ctcagaaggt ctgcaacagt tcacgctccc tctgatactg
     1801 caggagagtc ctcacatgcc acaccttctc cagatggacc attaccacaa ccatacccca
     1861 cccaccgcac tggtctttaa atccaggagg ctttggtgag ccttcagcac ctggctcctg
     1921 cctcttctag aatgaaccga gtatttcact tccactgaag ctgagagaaa gagaaaagag
     1981 aagcgtgttc acacacctct tcaaaccacc ccccatgtta gggtagccaa caggagttgg
     2041 ccaatactct tgcttctgaa gagctgcctc aaggacaatt ttcctgccag tgatcagcca
     2101 tgcaaaaagt ggagcccagc acagagggag ccggaaagaa ca
//
LOCUS       XR_004348152            4653 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X7, misc_RNA.
ACCESSION   XR_004348152
VERSION     XR_004348152.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4653
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4653
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 96% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747986"
     misc_RNA        1..4653
                     /gene="DET1"
                     /product="DET1 partner of COP1 E3 ubiquitin ligase,
                     transcript variant X7"
                     /db_xref="GeneID:116747986"
ORIGIN      
        1 gcggcagccg gcagctgcgg gcatctggtc ctacagcatg gcgggggcgg ggctggacga
       61 ggcgcgcgcc gagcaggctg gggagcccct cgccccggcc ctttgagccc ggaccggaca
      121 gagatgtgat aatggatcat catgtttcca ccatcaaacc tcgaagaatc caaaaccaaa
      181 atgtcattca ccgcctggaa cgccggcgga tcagttcagg caaggcaggc acccactggc
      241 accaggtccg agtgttccac cagaatgtct tccccaactt cacggttgta aatgttgaaa
      301 agccgccttg tttcttgcgt aaattctcac ctgatggacg ctacttcatt gctttctctt
      361 cagaccagac atctctcgaa atctatgagt accagggctg ccaggcagct gaggacctac
      421 tgcagggcta tgagggggag atcctgtcca atggcaatga ccagcggtca gtcaacatcc
      481 gtggccggct cttcgaacgc tttttcgtcc tgctgcacat taccaatgtg gcggccaatg
      541 gcgagcacct gaaccgggag tgcagcctct tcactgatga ctgccgctgt gtcatcgtgg
      601 gctcagctgc ctatctccca gatgagcctc accctccttt ttatgaggta tatcggaaca
      661 gtgagtccgt gacccccaac ccccggtccc ccctggagga ctactccctc catatcattg
      721 accttcatac tggccgctta tgtgatacac gtaccttcaa gtgtgacaaa gtggtcctgt
      781 cacacaacca agggttgtac ttgtataaga acatcctggc catcttgtca gtgcagcagc
      841 agaccatcca tgtcttccag gtgactcctg aaggcacttt cattgatgtg aggaccattg
      901 gccgcttctg ctatgaggat gacctgctca ctgtgtcagc tgtttttcct gaggtgcagc
      961 gggacagtca gacaggcatg gccaatcctt tcagggatcc cttcatcaac tccctgaaac
     1021 accggctgct cgtgtacctt tggcgccggg cagagcagga tggtagtgca atggccaaga
     1081 ggcgcttctt ccagtatttt gaccaactac ggcagctgcg catgtggaaa atgcagcttc
     1141 tggatgaaaa ccatctgttt atcaagtata ctagtgagga tgttgtaacc ctgcgggtca
     1201 cagatccatc acagctgatt ctgcctgtaa cagttagaga ctgtataagg aattgtctcc
     1261 taagaccgta ccagccatcc atggcatctt tctttgtggt gtacaatatg gtgacaacag
     1321 aggtgatcgc tgtgtttgag aatacatcag atgagctttt ggagctgttt gagaacttct
     1381 gtgatctctt ccgtaacgct accctgcata gtgaagtcca gtttccctgc tcagcttcca
     1441 gcaacaattt tgcacggcag atccagcgcc gtacgcgggc ctctcactgt tgtggcctct
     1501 cccattgtgg agcacaggct ccagacgcac aggctcagcg gccatggctc atgggcccag
     1561 ccgctccgcg gcatgtggga tcttcctgga ccggggcacg aacccgtgtc ccctgcatcg
     1621 gcaggcggac tctcaaccac cgcgccacca gggaagccca ctgcttcatc ttttagttgt
     1681 tggggagcct ggagagtaga ggtggtgggt gctgccgggg aataggagct gcttcagccc
     1741 gtggattgtc acagaggctt tgatttgtgg ttatcatgaa gctgtgggcc agccccatca
     1801 ttcgaagcca acttttgaag ccagtgagtc aggcagtgtt ggagtactag atcttcactg
     1861 acaaagggct gaaagccaaa gagcccagga tctttgatat cagctcaaat gaaagggaaa
     1921 gaaataagtt ctgtgtggcc cagggtttaa ttttatgatt tacactgagg ctgtgaaaat
     1981 tactgtcgag aaataatgga agagcagtgt taacactagg ctttcttttg ggggaactga
     2041 gaagtgttaa tgtccatcta gcactgcagg ctagcagtga aaacaaatca aaacccatct
     2101 aatcaatctt tctggtctca tcaaagttaa cgaacattca agtttgttta tttattgatt
     2161 tatcttttgc tgcgttgggt ctttgttgct gcgcgtgggc tttctctagt tgcggcgaac
     2221 aggggctact cttcgttgca gtgcatgggc ttctcattgc agtggcttct cttgttgcgg
     2281 agcacgggct ctaggcacgc gggcttcagt agttgtggca tgtgggttca gtagttgtgg
     2341 ctcgtgggct ctagagcgca ggctcagtag ttgtggcaca taggcttagt tgctctgcag
     2401 cacgcgggat cttcccagac cagggcttga aaccgtgtcc cctgaattgg caggcagatt
     2461 cttaaccact gcaccaccaa ggaagtcctg aacattcaag ttttttattc cattagtttc
     2521 agggatgaga tgttatatcg tattttctcc cctggactaa aaaaattatt ttccccttga
     2581 ttgttaaact atatgatatg cttcaatata gagaataaaa gaaaaatcaa gctgataaac
     2641 agttgacata ttttctaaga aactatagga aagtgaaaaa gaaggttaaa aaaaaatcta
     2701 aaatgtcatt acacaaacac aactattacc attttgatgt ttttccacca gttttttttt
     2761 ttaaggcata aatttgtgtg tgtggttttt tttgtttttt gtttttttgc ggtacacggg
     2821 cctctcactg ttgtggcctc tcccgttgcg gagcacaggc tcccggacgc gcaggctcag
     2881 cggccacggc tcatgggcct agctgctctg cggcatgtgg gatcttcccg gaccggggca
     2941 tgaacccgta tcccctgcat cggcagtcgg actctcaacc actgcgccac cagggaagcc
     3001 cctgtgtgtg tttttgatca tactatatat acagattgta gcctacttct tttacttacc
     3061 attatgataa acatttcctc ttttaccata taatctttga aaattacggt tttctattag
     3121 gtttttaatt tttctctcaa tttttcattg tcataaacag tgctatattg aacgtgcaca
     3181 gggatttttc ttccttaggg caaatttcca gaagaataga aatacttggt caaagggtat
     3241 taaatatagt attcattata attgtgagaa ataactgctc tattgttatt attaatgata
     3301 agtcaggtag gtgattctgt atccatgtta ctgttcttca agatactgga gttttggcag
     3361 aagtataagt agcaagctcc caaactttat ttaaacaaag aatgagtaat ttgtcaaaag
     3421 gtttgatgta agttggctta taactgatcc caagaagagt cagaggctgt gtctgttcag
     3481 gattttctgc tctgtgtaac tcctttttaa tgtagtctaa ggctgctatt tggaggaaat
     3541 aagtttgagt agaaatattt gtcatagatt agtcatactg ttgttaactt ttgtagaata
     3601 tttgctaact tttctaaagt aacttaatgt tcccaatttc tcactctatt tttgcttttt
     3661 gagaatattt gtagctaggc agatttgtga tgtgtcagaa ttcaatatct agattttgtt
     3721 ttcagaatga gttgttttta gacatatgtt tgtcaattta aaacccagtg cagtttgtgt
     3781 gccactaaca tagccttcct cactgttgct ttattttagg tttaaagaca ctattgtaaa
     3841 tgccaagtat ggagggcaca cggaggcagt acgccggctg ctgggtcagc tccccatcag
     3901 cgcccagtct tacagtggta gcccctacct tgatttgtct ctcttcagct acgatgacaa
     3961 gtgggtgtca gtcatggagc ggcccaagac ttgtggagat caccctatca ggttctatgc
     4021 ccgggactct ggtctgctca agtttgagat tcaggcaggc ttactgggcc gtcccatcaa
     4081 ccacacggtg cgacgccttg ttgccttcac cttccaccct ttcgagcctt ttgctatctc
     4141 tgtgcagagg actaacgctg agtatgttgt caacttccat atgcgacact gctgcacgta
     4201 ggtgcctcac cagagtgggt catccggtct tccaagactc tgcctccttc atatctcagt
     4261 ggaccgtaaa gcagaagctc ctgactctca gccttgtcgg ttccagactg tatacctcag
     4321 atggggagag ccaggtggct cagcctgacg gaattttttt gtcgtacaca gtacaacccg
     4381 atcgacttaa agtcctcttg ccttttccct gtgggaatgc ccaacattaa ttaagtccat
     4441 ttaagttttt tttattttgc attttattgc tatgaagatg agagcattac acctctgcct
     4501 ccttcatgtc acttctttgg cattatggta tgcagcctga agcaggtaaa tcttgtttac
     4561 tcatgagaag tgtgtacatc tttccactta gccaatagta gggctgtctt tataagaaaa
     4621 aaaaaataaa gccttggtat tttcttactt aaa
//
LOCUS       XM_032620762            2092 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X8, mRNA.
ACCESSION   XM_032620762
VERSION     XM_032620762.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2092
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747986"
     CDS             132..1640
                     /gene="DET1"
                     /codon_start=1
                     /product="DET1 homolog isoform X4"
                     /protein_id="XP_032476653.1"
                     /db_xref="GeneID:116747986"
                     /translation="MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQ
                     NVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEG
                     EILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAA
                     YLPDEPHPPFYEVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQRDSQTGMANPFRD
                     PFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKMQLLDENHLFIKYT
                     SEDVVTLRVTDPSQLILPVTVRDCIRNCLLRPYQPSMASFFVVYNMVTTEVIAVFENT
                     SDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIVNAKYGGHTEA
                     VRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYARDSGLLK
                     FEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAEYVVNFHMRHCCT"
     misc_feature    555..1628
                     /gene="DET1"
                     /note="De-etiolated protein 1 Det1; Region: Det1;
                     pfam09737"
                     /db_xref="CDD:462868"
ORIGIN      
        1 gcggcagccg gcagctgcgg gcatctggtc ctacagcatg gcgggggcgg ggctggacga
       61 ggcgcgcgcc gagcaggctg gggagcccct cgccccggcc ctttgagccc ggaccggaca
      121 gagatgtgat aatggatcat catgtttcca ccatcaaacc tcgaagaatc caaaaccaaa
      181 atgtcattca ccgcctggaa cgccggcgga tcagttcagg caaggcaggc acccactggc
      241 accaggtccg agtgttccac cagaatgtct tccccaactt cacggttgta aatgttgaaa
      301 agccgccttg tttcttgcgt aaattctcac ctgatggacg ctacttcatt gctttctctt
      361 cagaccagac atctctcgaa atctatgagt accagggctg ccaggcagct gaggacctac
      421 tgcagggcta tgagggggag atcctgtcca atggcaatga ccagcggtca gtcaacatcc
      481 gtggccggct cttcgaacgc tttttcgtcc tgctgcacat taccaatgtg gcggccaatg
      541 gcgagcacct gaaccgggag tgcagcctct tcactgatga ctgccgctgt gtcatcgtgg
      601 gctcagctgc ctatctccca gatgagcctc accctccttt ttatgaggtg actcctgaag
      661 gcactttcat tgatgtgagg accattggcc gcttctgcta tgaggatgac ctgctcactg
      721 tgtcagctgt ttttcctgag gtgcagcggg acagtcagac aggcatggcc aatcctttca
      781 gggatccctt catcaactcc ctgaaacacc ggctgctcgt gtacctttgg cgccgggcag
      841 agcaggatgg tagtgcaatg gccaagaggc gcttcttcca gtattttgac caactacggc
      901 agctgcgcat gtggaaaatg cagcttctgg atgaaaacca tctgtttatc aagtatacta
      961 gtgaggatgt tgtaaccctg cgggtcacag atccatcaca gctgattctg cctgtaacag
     1021 ttagagactg tataaggaat tgtctcctaa gaccgtacca gccatccatg gcatctttct
     1081 ttgtggtgta caatatggtg acaacagagg tgatcgctgt gtttgagaat acatcagatg
     1141 agcttttgga gctgtttgag aacttctgtg atctcttccg taacgctacc ctgcatagtg
     1201 aagtccagtt tccctgctca gcttccagca acaattttgc acggcagatc cagcgccggt
     1261 ttaaagacac tattgtaaat gccaagtatg gagggcacac ggaggcagta cgccggctgc
     1321 tgggtcagct ccccatcagc gcccagtctt acagtggtag cccctacctt gatttgtctc
     1381 tcttcagcta cgatgacaag tgggtgtcag tcatggagcg gcccaagact tgtggagatc
     1441 accctatcag gttctatgcc cgggactctg gtctgctcaa gtttgagatt caggcaggct
     1501 tactgggccg tcccatcaac cacacggtgc gacgccttgt tgccttcacc ttccaccctt
     1561 tcgagccttt tgctatctct gtgcagagga ctaacgctga gtatgttgtc aacttccata
     1621 tgcgacactg ctgcacgtag gtgcctcacc agagtgggtc atccggtctt ccaagactct
     1681 gcctccttca tatctcagtg gaccgtaaag cagaagctcc tgactctcag ccttgtcggt
     1741 tccagactgt atacctcaga tggggagagc caggtggctc agcctgacgg aatttttttg
     1801 tcgtacacag tacaacccga tcgacttaaa gtcctcttgc cttttccctg tgggaatgcc
     1861 caacattaat taagtccatt taagtttttt ttattttgca ttttattgct atgaagatga
     1921 gagcattaca cctctgcctc cttcatgtca cttctttggc attatggtat gcagcctgaa
     1981 gcaggtaaat cttgtttact catgagaagt gtgtacatct ttccacttag ccaatagtag
     2041 ggctgtcttt ataagaaaaa aaaaataaag ccttggtatt ttcttactta aa
//
LOCUS       XR_004348155            4584 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X9, misc_RNA.
ACCESSION   XR_004348155
VERSION     XR_004348155.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4584
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4584
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 96% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116747986"
     misc_RNA        1..4584
                     /gene="DET1"
                     /product="DET1 partner of COP1 E3 ubiquitin ligase,
                     transcript variant X9"
                     /db_xref="GeneID:116747986"
ORIGIN      
        1 gcggcagccg gcagctgcgg gcatctggtc ctacagcatg gcgggggcgg ggctggacga
       61 ggcgcgcgcc gagcaggctg gggagcccct cgccccggcc ctttgagccc ggaccggaca
      121 gagatgtgat aatggatcat catgtttcca ccatcaaacc tcgaagaatc caaaaccaaa
      181 atgtcattca ccgcctggaa cgccggcgga tcagttcagg caaggcaggc acccactggc
      241 accaggtccg agtgttccac cagaatgtct tccccaactt cacggttgta aatgttgaaa
      301 agccgccttg tttcttgcgt aaattctcac ctgatggacg ctacttcatt gctttctctt
      361 cagaccagac atctctcgaa atctatgagt accagggctg ccaggcagct gaggacctac
      421 tgcagggcta tgagggggag atcctgtcca atggcaatga ccagcggtca gtcaacatcc
      481 gtggccggct cttcgaacgc tttttcgtcc tgctgcacat taccaatgtg gcggccaatg
      541 gcgagcacct gaaccgggag tgcagcctct tcactgatga ctgccgctgt gtcatcgtgg
      601 gctcagctgc ctatctccca gatgagcctc accctccttt ttatgaggta tatcggaaca
      661 gtgagtccgt gacccccaac ccccggtccc ccctggagga ctactccctc catatcattg
      721 accttcatac tggccgctta tgtgatacac gtaccttcaa gtgtgacaaa gtggtcctgt
      781 cacacaacca agggttgtac ttgtataaga acatcctggc catcttgtca gtgcagcagc
      841 agaccatcca tgtcttccag gtgactcctg aaggcacttt cattgatgtg aggaccattg
      901 gccgcttctg ctatgaggat gacctgctca ctgtgtcagc tgtttttcct gaggtgcagc
      961 gggacagtca gacaggcatg gccaatcctt tcagggatcc cttcatcaac tccctgaaac
     1021 accggctgct cgtgtacctt tggcgccggg cagagcagga tggtagtgca atggccaaga
     1081 ggcgcttctt ccagtatttt gaccaactac ggcagctgcg catgtggaaa atgcagcttc
     1141 tggatgaaaa ccatctgttt atcaagtata ctagtgagga tgttgtaacc ctgcgggtca
     1201 cagatccatc acaggcatct ttctttgtgg tgtacaatat ggtgacaaca gaggtgatcg
     1261 ctgtgtttga gaatacatca gatgagcttt tggagctgtt tgagaacttc tgtgatctct
     1321 tccgtaacgc taccctgcat agtgaagtcc agtttccctg ctcagcttcc agcaacaatt
     1381 ttgcacggca gatccagcgc cgtacgcggg cctctcactg ttgtggcctc tcccattgtg
     1441 gagcacaggc tccagacgca caggctcagc ggccatggct catgggccca gccgctccgc
     1501 ggcatgtggg atcttcctgg accggggcac gaacccgtgt cccctgcatc ggcaggcgga
     1561 ctctcaacca ccgcgccacc agggaagccc actgcttcat cttttagttg ttggggagcc
     1621 tggagagtag aggtggtggg tgctgccggg gaataggagc tgcttcagcc cgtggattgt
     1681 cacagaggct ttgatttgtg gttatcatga agctgtgggc cagccccatc attcgaagcc
     1741 aacttttgaa gccagtgagt caggcagtgt tggagtacta gatcttcact gacaaagggc
     1801 tgaaagccaa agagcccagg atctttgata tcagctcaaa tgaaagggaa agaaataagt
     1861 tctgtgtggc ccagggttta attttatgat ttacactgag gctgtgaaaa ttactgtcga
     1921 gaaataatgg aagagcagtg ttaacactag gctttctttt gggggaactg agaagtgtta
     1981 atgtccatct agcactgcag gctagcagtg aaaacaaatc aaaacccatc taatcaatct
     2041 ttctggtctc atcaaagtta acgaacattc aagtttgttt atttattgat ttatcttttg
     2101 ctgcgttggg tctttgttgc tgcgcgtggg ctttctctag ttgcggcgaa caggggctac
     2161 tcttcgttgc agtgcatggg cttctcattg cagtggcttc tcttgttgcg gagcacgggc
     2221 tctaggcacg cgggcttcag tagttgtggc atgtgggttc agtagttgtg gctcgtgggc
     2281 tctagagcgc aggctcagta gttgtggcac ataggcttag ttgctctgca gcacgcggga
     2341 tcttcccaga ccagggcttg aaaccgtgtc ccctgaattg gcaggcagat tcttaaccac
     2401 tgcaccacca aggaagtcct gaacattcaa gttttttatt ccattagttt cagggatgag
     2461 atgttatatc gtattttctc ccctggacta aaaaaattat tttccccttg attgttaaac
     2521 tatatgatat gcttcaatat agagaataaa agaaaaatca agctgataaa cagttgacat
     2581 attttctaag aaactatagg aaagtgaaaa agaaggttaa aaaaaaatct aaaatgtcat
     2641 tacacaaaca caactattac cattttgatg tttttccacc agtttttttt tttaaggcat
     2701 aaatttgtgt gtgtggtttt ttttgttttt tgtttttttg cggtacacgg gcctctcact
     2761 gttgtggcct ctcccgttgc ggagcacagg ctcccggacg cgcaggctca gcggccacgg
     2821 ctcatgggcc tagctgctct gcggcatgtg ggatcttccc ggaccggggc atgaacccgt
     2881 atcccctgca tcggcagtcg gactctcaac cactgcgcca ccagggaagc ccctgtgtgt
     2941 gtttttgatc atactatata tacagattgt agcctacttc ttttacttac cattatgata
     3001 aacatttcct cttttaccat ataatctttg aaaattacgg ttttctatta ggtttttaat
     3061 ttttctctca atttttcatt gtcataaaca gtgctatatt gaacgtgcac agggattttt
     3121 cttccttagg gcaaatttcc agaagaatag aaatacttgg tcaaagggta ttaaatatag
     3181 tattcattat aattgtgaga aataactgct ctattgttat tattaatgat aagtcaggta
     3241 ggtgattctg tatccatgtt actgttcttc aagatactgg agttttggca gaagtataag
     3301 tagcaagctc ccaaacttta tttaaacaaa gaatgagtaa tttgtcaaaa ggtttgatgt
     3361 aagttggctt ataactgatc ccaagaagag tcagaggctg tgtctgttca ggattttctg
     3421 ctctgtgtaa ctccttttta atgtagtcta aggctgctat ttggaggaaa taagtttgag
     3481 tagaaatatt tgtcatagat tagtcatact gttgttaact tttgtagaat atttgctaac
     3541 ttttctaaag taacttaatg ttcccaattt ctcactctat ttttgctttt tgagaatatt
     3601 tgtagctagg cagatttgtg atgtgtcaga attcaatatc tagattttgt tttcagaatg
     3661 agttgttttt agacatatgt ttgtcaattt aaaacccagt gcagtttgtg tgccactaac
     3721 atagccttcc tcactgttgc tttattttag gtttaaagac actattgtaa atgccaagta
     3781 tggagggcac acggaggcag tacgccggct gctgggtcag ctccccatca gcgcccagtc
     3841 ttacagtggt agcccctacc ttgatttgtc tctcttcagc tacgatgaca agtgggtgtc
     3901 agtcatggag cggcccaaga cttgtggaga tcaccctatc aggttctatg cccgggactc
     3961 tggtctgctc aagtttgaga ttcaggcagg cttactgggc cgtcccatca accacacggt
     4021 gcgacgcctt gttgccttca ccttccaccc tttcgagcct tttgctatct ctgtgcagag
     4081 gactaacgct gagtatgttg tcaacttcca tatgcgacac tgctgcacgt aggtgcctca
     4141 ccagagtggg tcatccggtc ttccaagact ctgcctcctt catatctcag tggaccgtaa
     4201 agcagaagct cctgactctc agccttgtcg gttccagact gtatacctca gatggggaga
     4261 gccaggtggc tcagcctgac ggaatttttt tgtcgtacac agtacaaccc gatcgactta
     4321 aagtcctctt gccttttccc tgtgggaatg cccaacatta attaagtcca tttaagtttt
     4381 ttttattttg cattttattg ctatgaagat gagagcatta cacctctgcc tccttcatgt
     4441 cacttctttg gcattatggt atgcagcctg aagcaggtaa atcttgttta ctcatgagaa
     4501 gtgtgtacat ctttccactt agccaatagt agggctgtct ttataagaaa aaaaaaataa
     4561 agccttggta ttttcttact taaa
//
LOCUS       XM_032620773            2377 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus DET1 partner of COP1 E3 ubiquitin ligase
            (DET1), transcript variant X10, mRNA.
ACCESSION   XM_032620773
VERSION     XM_032620773.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2377
                     /gene="DET1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116747986"
     CDS             204..1925
                     /gene="DET1"
                     /codon_start=1
                     /product="DET1 homolog isoform X5"
                     /protein_id="XP_032476664.1"
                     /db_xref="GeneID:116747986"
                     /translation="MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQ
                     NVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEG
                     EILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAA
                     YLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSH
                     NQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQ
                     RDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKM
                     QLLDENHLFIKYTSEDVVTLRVTDPSQLILPVTVRDCIRNCLLRPYQPSMASFFVVYN
                     MVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKD
                     TIVNAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDH
                     PIRFYARDSGLLKFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAEYVVNF
                     HMRHCCT"
     misc_feature    627..1913
                     /gene="DET1"
                     /note="De-etiolated protein 1 Det1; Region: Det1;
                     pfam09737"
                     /db_xref="CDD:462868"
ORIGIN      
        1 ggccggccgg acgggtgccg cgctctctcc actttccttc tcgctgcacc gcacttccgt
       61 tggctagcgg aagcggcagc cggcagctgc gggcatctgg tcctacagca tggcgggggc
      121 ggggctggac gaggcgcgcg ccgagcaggc tggggagccc ctcgccccgg ccctttgagc
      181 ccggaccgga cagagatgtg ataatggatc atcatgtttc caccatcaaa cctcgaagaa
      241 tccaaaacca aaatgtcatt caccgcctgg aacgccggcg gatcagttca ggcaaggcag
      301 gcacccactg gcaccaggtc cgagtgttcc accagaatgt cttccccaac ttcacggttg
      361 taaatgttga aaagccgcct tgtttcttgc gtaaattctc acctgatgga cgctacttca
      421 ttgctttctc ttcagaccag acatctctcg aaatctatga gtaccagggc tgccaggcag
      481 ctgaggacct actgcagggc tatgaggggg agatcctgtc caatggcaat gaccagcggt
      541 cagtcaacat ccgtggccgg ctcttcgaac gctttttcgt cctgctgcac attaccaatg
      601 tggcggccaa tggcgagcac ctgaaccggg agtgcagcct cttcactgat gactgccgct
      661 gtgtcatcgt gggctcagct gcctatctcc cagatgagcc tcaccctcct ttttatgagg
      721 tatatcggaa cagtgagtcc gtgaccccca acccccggtc ccccctggag gactactccc
      781 tccatatcat tgaccttcat actggccgct tatgtgatac acgtaccttc aagtgtgaca
      841 aagtggtcct gtcacacaac caagggttgt acttgtataa gaacatcctg gccatcttgt
      901 cagtgcagca gcagaccatc catgtcttcc aggtgactcc tgaaggcact ttcattgatg
      961 tgaggaccat tggccgcttc tgctatgagg atgacctgct cactgtgtca gctgtttttc
     1021 ctgaggtgca gcgggacagt cagacaggca tggccaatcc tttcagggat cccttcatca
     1081 actccctgaa acaccggctg ctcgtgtacc tttggcgccg ggcagagcag gatggtagtg
     1141 caatggccaa gaggcgcttc ttccagtatt ttgaccaact acggcagctg cgcatgtgga
     1201 aaatgcagct tctggatgaa aaccatctgt ttatcaagta tactagtgag gatgttgtaa
     1261 ccctgcgggt cacagatcca tcacagctga ttctgcctgt aacagttaga gactgtataa
     1321 ggaattgtct cctaagaccg taccagccat ccatggcatc tttctttgtg gtgtacaata
     1381 tggtgacaac agaggtgatc gctgtgtttg agaatacatc agatgagctt ttggagctgt
     1441 ttgagaactt ctgtgatctc ttccgtaacg ctaccctgca tagtgaagtc cagtttccct
     1501 gctcagcttc cagcaacaat tttgcacggc agatccagcg ccggtttaaa gacactattg
     1561 taaatgccaa gtatggaggg cacacggagg cagtacgccg gctgctgggt cagctcccca
     1621 tcagcgccca gtcttacagt ggtagcccct accttgattt gtctctcttc agctacgatg
     1681 acaagtgggt gtcagtcatg gagcggccca agacttgtgg agatcaccct atcaggttct
     1741 atgcccggga ctctggtctg ctcaagtttg agattcaggc aggcttactg ggccgtccca
     1801 tcaaccacac ggtgcgacgc cttgttgcct tcaccttcca ccctttcgag ccttttgcta
     1861 tctctgtgca gaggactaac gctgagtatg ttgtcaactt ccatatgcga cactgctgca
     1921 cgtaggtgcc tcaccagagt gggtcatccg gtcttccaag actctgcctc cttcatatct
     1981 cagtggaccg taaagcagaa gctcctgact ctcagccttg tcggttccag actgtatacc
     2041 tcagatgggg agagccaggt ggctcagcct gacggaattt ttttgtcgta cacagtacaa
     2101 cccgatcgac ttaaagtcct cttgcctttt ccctgtggga atgcccaaca ttaattaagt
     2161 ccatttaagt tttttttatt ttgcatttta ttgctatgaa gatgagagca ttacacctct
     2221 gcctccttca tgtcacttct ttggcattat ggtatgcagc ctgaagcagg taaatcttgt
     2281 ttactcatga gaagtgtgta catctttcca cttagccaat agtagggctg tctttataag
     2341 aaaaaaaaaa taaagccttg gtattttctt acttaaa
//
LOCUS       XM_032620788             988 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein L46
            (MRPL46), transcript variant X1, mRNA.
ACCESSION   XM_032620788
VERSION     XM_032620788.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..988
                     /gene="MRPL46"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 1 long SRA read, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748017"
     CDS             32..874
                     /gene="MRPL46"
                     /codon_start=1
                     /product="39S ribosomal protein L46, mitochondrial isoform
                     X1"
                     /protein_id="XP_032476679.1"
                     /db_xref="GeneID:116748017"
                     /translation="MAGAVRLTVLGVARGWRQFEGPWTHSLGSRSLALAAAPSSSASP
                     WRLLGALCLQRPPLVSKLLTPLQEEMEALLQQIEIERSLYSDHELRALDEAQKLAKKK
                     SDLYGEEEDEQNILLLQDLEDMWEQKFLQFKPGARITEADVKNDRTSLHRKLDRNLIL
                     LVREKLGDQDVWMLPQAEWQPGETLRRTAERTLATLSENNMEAKFLGNAPCGHYKFKF
                     PQAMRKESSLGAKIFFFKALLLTGDFLEAGKKGHHVWVSKEELGDYLKPKYLAQVRRF
                     LLDL"
     misc_feature    164..457
                     /gene="MRPL46"
                     /note="39S mitochondrial ribosomal protein L46; Region:
                     MRP-L46; pfam11788"
                     /db_xref="CDD:432074"
     misc_feature    440..859
                     /gene="MRPL46"
                     /note="Mitochondrial ribosomal protein L46; Region:
                     NUDIX_MRP_L46; cd04661"
                     /db_xref="CDD:467546"
ORIGIN      
        1 gagccgcggt acattgtggg aaggttgaca gatggcgggg gctgtaaggc tgactgtatt
       61 aggggtggcg aggggctggc ggcagttcga gggcccctgg acccatagtc tgggttctcg
      121 cagcttggcc cttgcggccg caccctcgag cagcgcgtct ccatggcgct tgctgggcgc
      181 gttgtgcctg cagcggccac cgctggtctc gaagctgctg accccattgc aggaagagat
      241 ggaggctctg ctacagcaga tcgagataga gagaagcctg tattcagacc atgagcttcg
      301 tgctttggat gaagcccaga aactggcaaa gaagaaaagc gacctttatg gtgaagaaga
      361 agacgagcag aatatattgc tgttgcagga tttggaagac atgtgggagc agaaattcct
      421 acagttcaaa cctggagctc gaataacaga agccgatgta aagaatgacc gaacctcatt
      481 gcaccggaag ctagacagga acctcattct gttggtcaga gagaagcttg gagaccagga
      541 cgtttggatg ctgccccagg cagagtggca gcccggggag accctccgcc gaacagctga
      601 acgaaccctg gccacgctct cagagaacaa catggaagcc aagttcctgg gaaatgcacc
      661 ctgtggccac tacaagttca agttccccca ggcaatgcgg aaagagagca gccttggggc
      721 caaaatattc ttcttcaaag cactgctgct aactggagac tttctcgagg ctgggaagaa
      781 gggccatcat gtgtgggtca gtaaggagga gctgggtgac tatttgaaac caaaatacct
      841 ggcccaggtt aggaggtttc tcttggacct ctgatggaca atgcccagac aggtctgcaa
      901 tcgggcctca ggacgttggg ttgcctcttc tctgtaggga atatcaagca gcaaactaaa
      961 ttctgagaaa taaacaagtt tatcattg
//
LOCUS       XM_032620797             980 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein L46
            (MRPL46), transcript variant X2, mRNA.
ACCESSION   XM_032620797
VERSION     XM_032620797.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..980
                     /gene="MRPL46"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116748017"
     CDS             144..866
                     /gene="MRPL46"
                     /codon_start=1
                     /product="39S ribosomal protein L46, mitochondrial isoform
                     X2"
                     /protein_id="XP_032476688.1"
                     /db_xref="GeneID:116748017"
                     /translation="MALAGRVVPAAATAGLEAADPIAGRDGGSATAGGIEIEIERSLY
                     SDHELRALDEAQKLAKKKSDLYGEEEDEQNILLLQDLEDMWEQKFLQFKPGARITEAD
                     VKNDRTSLHRKLDRNLILLVREKLGDQDVWMLPQAEWQPGETLRRTAERTLATLSENN
                     MEAKFLGNAPCGHYKFKFPQAMRKESSLGAKIFFFKALLLTGDFLEAGKKGHHVWVSK
                     EELGDYLKPKYLAQVRRFLLDL"
     misc_feature    <249..449
                     /gene="MRPL46"
                     /note="39S mitochondrial ribosomal protein L46; Region:
                     MRP-L46; pfam11788"
                     /db_xref="CDD:432074"
     misc_feature    432..851
                     /gene="MRPL46"
                     /note="Mitochondrial ribosomal protein L46; Region:
                     NUDIX_MRP_L46; cd04661"
                     /db_xref="CDD:467546"
ORIGIN      
        1 gaaggttgac agatggcggg ggctgtaagg ctgactgtat taggggtggc gaggggctgg
       61 cggcagttcg agggcccctg gacccatagt ctgggttctc gcagcttggc ccttgcggcc
      121 gcaccctcga gcagcgcgtc tccatggcgc ttgctgggcg cgttgtgcct gcagcggcca
      181 ccgctggtct cgaagctgct gaccccattg caggaagaga tggaggctct gctacagcag
      241 gtgggattga gatcgagata gagagaagcc tgtattcaga ccatgagctt cgtgctttgg
      301 atgaagccca gaaactggca aagaagaaaa gcgaccttta tggtgaagaa gaagacgagc
      361 agaatatatt gctgttgcag gatttggaag acatgtggga gcagaaattc ctacagttca
      421 aacctggagc tcgaataaca gaagccgatg taaagaatga ccgaacctca ttgcaccgga
      481 agctagacag gaacctcatt ctgttggtca gagagaagct tggagaccag gacgtttgga
      541 tgctgcccca ggcagagtgg cagcccgggg agaccctccg ccgaacagct gaacgaaccc
      601 tggccacgct ctcagagaac aacatggaag ccaagttcct gggaaatgca ccctgtggcc
      661 actacaagtt caagttcccc caggcaatgc ggaaagagag cagccttggg gccaaaatat
      721 tcttcttcaa agcactgctg ctaactggag actttctcga ggctgggaag aagggccatc
      781 atgtgtgggt cagtaaggag gagctgggtg actatttgaa accaaaatac ctggcccagg
      841 ttaggaggtt tctcttggac ctctgatgga caatgcccag acaggtctgc aatcgggcct
      901 caggacgttg ggttgcctct tctctgtagg gaatatcaag cagcaaacta aattctgaga
      961 aataaacaag tttatcattg
//
LOCUS       XM_032620811            1096 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein S11
            (MRPS11), transcript variant X1, mRNA.
ACCESSION   XM_032620811
VERSION     XM_032620811.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1096
                     /gene="MRPS11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116748024"
     CDS             135..800
                     /gene="MRPS11"
                     /codon_start=1
                     /product="28S ribosomal protein S11, mitochondrial isoform
                     X1"
                     /protein_id="XP_032476702.1"
                     /db_xref="GeneID:116748024"
                     /translation="MYVIKRNQVTFPLQRPHKCSWCWLRSSPAKLRGRRGRELSGSTH
                     VMQVVRNARFWLLRLWAWPPTTRVAVAGVPAPTIHTSAQQMQDAGAKPEVEKEKAPAP
                     APRRSIFSIYPPIPGQESSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLARAS
                     CGTEGFQNAKKGTGIAAQTAGIAAAASAIKGLTMGGLEVISITDNTPIPHNGCRPRKA
                     RRL"
     misc_feature    513..794
                     /gene="MRPS11"
                     /note="Ribosomal protein S11 [Translation, ribosomal
                     structure and biogenesis]; Region: RpsK; COG0100"
                     /db_xref="CDD:439870"
ORIGIN      
        1 agaacgaacc attccaatat ggaggggtgg gcgaagatct catgttagaa aactaggaaa
       61 agggaggcgg attcccagtt gccactctca acgatagtta ttatggagca tttaaatggg
      121 aataaaaatc tttaatgtac gttataaaaa ggaatcaggt gacttttcct ctgcaacgcc
      181 cccacaagtg ctcgtggtgc tggctccgct ccagccccgc caagctccgc ggtcgccgcg
      241 gacgggagct gagtgggtca actcacgtca tgcaggttgt aagaaacgcg cggttttggc
      301 tcttgcgttt atgggcttgg ccaccgacga ccagggtcgc cgtggccgga gtgccggccc
      361 ccaccatcca cactagcgcc cagcagatgc aagacgcagg ggccaagccg gaagttgaga
      421 aggagaaggc tccggcgcca gctccgaggc gcagcatttt cagcatttac cctccaattc
      481 caggacaaga gagttctctg aggtgggcag gaaagaaatt tgaggagatc ccaatcgcac
      541 acatcaaagc atcatacaac aacacacaga tccaggtagt ctctgctgct caccagcccc
      601 ttgcccgcgc ttcctgtggc acggaggggt ttcagaatgc caagaagggc acaggcattg
      661 cagcgcaaac agcaggcata gctgccgcgg cgtctgccat caagggactg accatggggg
      721 gcctggaagt gatctcaatc acagacaaca cccccatccc gcacaacggc tgccgcccca
      781 ggaaggctcg gaggctgtga tgggcaggaa gcctgcacct gaacctgacc tcaagtccca
      841 cctccagctg gatgtcatgg aaagcacact gtcagagctc tctccaggga gggcttgtta
      901 gagacccttc agacagtaag ggagagctct gcctccttat gggatggcct ttgcttgttc
      961 cttcgactgg agaccagtat gcccagaagt gcctctcctg gacaggaagg gagctacagg
     1021 agcagctgtg gcccagatgc caaccagtaa atgctgcagc tgctctgaaa aaataaaaat
     1081 atctccacca tctgta
//
LOCUS       XM_032620818            1190 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus mitochondrial ribosomal protein S11
            (MRPS11), transcript variant X2, mRNA.
ACCESSION   XM_032620818
VERSION     XM_032620818.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1190
                     /gene="MRPS11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116748024"
     CDS             163..894
                     /gene="MRPS11"
                     /codon_start=1
                     /product="28S ribosomal protein S11, mitochondrial isoform
                     X2"
                     /protein_id="XP_032476709.1"
                     /db_xref="GeneID:116748024"
                     /translation="MYVIKRNQVTFPLQRPHKCSWCWLRSSPAKLRGRRGRELSGSTH
                     VMQVVRNARFWLLRLWAWPPTTRVAVAGVPAPTIHTSAQQMQDAGAKPEVEKEKAPAP
                     APRRSIFSIYPPIPGQESSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLARAS
                     CGTEGFQNAKKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLGPGRLSAIKGLTMGG
                     LEVISITDNTPIPHNGCRPRKARRL"
     misc_feature    541..888
                     /gene="MRPS11"
                     /note="Ribosomal protein S11 [Translation, ribosomal
                     structure and biogenesis]; Region: RpsK; COG0100"
                     /db_xref="CDD:439870"
ORIGIN      
        1 gggaaaagct aggttccccg gaactagtag aacgaaccat tccaatatgg aggggtgggc
       61 gaagatctca tgttagaaaa ctaggaaaag ggaggcggat tcccagttgc cactctcaac
      121 gatagttatt atggagcatt taaatgggaa taaaaatctt taatgtacgt tataaaaagg
      181 aatcaggtga cttttcctct gcaacgcccc cacaagtgct cgtggtgctg gctccgctcc
      241 agccccgcca agctccgcgg tcgccgcgga cgggagctga gtgggtcaac tcacgtcatg
      301 caggttgtaa gaaacgcgcg gttttggctc ttgcgtttat gggcttggcc accgacgacc
      361 agggtcgccg tggccggagt gccggccccc accatccaca ctagcgccca gcagatgcaa
      421 gacgcagggg ccaagccgga agttgagaag gagaaggctc cggcgccagc tccgaggcgc
      481 agcattttca gcatttaccc tccaattcca ggacaagaga gttctctgag gtgggcagga
      541 aagaaatttg aggagatccc aatcgcacac atcaaagcat catacaacaa cacacagatc
      601 caggtagtct ctgctgctca ccagcccctt gcccgcgctt cctgtggcac ggaggggttt
      661 cagaatgcca agaagggcac aggcattgca gcgcaaacag caggcatagc tgccgcggcg
      721 aaagctacgg ggaagggtgt gacccacgtc cgagttgtgg ttaaaggcct ggggccaggg
      781 cgcttgtctg ccatcaaggg actgaccatg gggggcctgg aagtgatctc aatcacagac
      841 aacaccccca tcccgcacaa cggctgccgc cccaggaagg ctcggaggct gtgatgggca
      901 ggaagcctgc acctgaacct gacctcaagt cccacctcca gctggatgtc atggaaagca
      961 cactgtcaga gctctctcca gggagggctt gttagagacc cttcagacag taagggagag
     1021 ctctgcctcc ttatgggatg gcctttgctt gttccttcga ctggagacca gtatgcccag
     1081 aagtgcctct cctggacagg aagggagcta caggagcagc tgtggcccag atgccaacca
     1141 gtaaatgctg cagctgctct gaaaaaataa aaatatctcc accatctgta
//
LOCUS       XR_004348160            5191 bp    RNA     linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus uncharacterized LOC116748038
            (LOC116748038), ncRNA.
ACCESSION   XR_004348160
VERSION     XR_004348160.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5191
                     /organism="Phocoena sinus"
                     /mol_type="transcribed RNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5191
                     /gene="LOC116748038"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116748038"
     ncRNA           1..5191
                     /ncRNA_class="lncRNA"
                     /gene="LOC116748038"
                     /product="uncharacterized LOC116748038"
                     /db_xref="GeneID:116748038"
ORIGIN      
        1 ggccgcaaca gtgagaggcc cgtgtaccgc aaaaaaaaaa aaaaagcttg accatcactc
       61 cctaaatgat gctaatccaa gccacagtgg ggatgagctc tcccaggaaa aaagcagaga
      121 atgaggaaaa taagacgacc cagtgttaaa tgctgcaagg agggcaaggc tgcaaaaagg
      181 cagggatgca gcaatcagag agacagcagg tgtggcgtct cagaagccaa agggccaagc
      241 acttcagaag aagggaacag ttggggtgca cggtgtggct gagaggtcag ctggcaggtc
      301 aagcaaggtg aggactgggc aatggccatg gatttggcaa tgtggaggtc cccgttcacc
      361 gaagggaagg agggtggaag agagtcagga tgcctactct tccgtagagg ctgtgtcatg
      421 gcaacagggg tggatgagga gatgggctgt ctcccttgag acatggcagc tgtgagtcgg
      481 ggtgtggagg accctggacc taaaggaggc gggagggaag aggcctcagc aaggcagctg
      541 gaggccaggc ctcaggggga gacagccaga gtggggctcc agtgacaggc gggaacagca
      601 gcgtccaact ccagcaacgt ggcattgaca acggaaacag aacgtccttg cagttggtac
      661 acggggaacc tttttttccc aatattccat aaattgttct gaaagaaaag tgctctcaaa
      721 tgtaaatagc tagagcctct tcagagggag atctggcaat atcgttcacc acttgcgatg
      781 tacagacctt cacagttccc ttctaggaat ttcccacatg gagcagcgct gtccctgctc
      841 atggatgtgc cctggagctg catggtcagc acagcagcca ccagccccgc gggagtctcc
      901 agcacttgag atgtggcgag caggaccatg actgaggaat tggcagttcg gttttatcta
      961 gttcaaattc actgaaatgt gctaccacag aacaggggtg tgtgtgatga gaagaggtat
     1021 caaggaacac ttcctggaag aggtgacctg agctcaaaat aagaggtctt tgcagatgtg
     1081 atcaagttaa ggatataaaa atggggagat tatcctggat tacctgggtg gaccctaaat
     1141 gagatcacat gtacccttaa gaaatggagg cagcaggaga tgtaactgca cagaggagga
     1201 gaaggccatg tgaccacgtc ggcagagacg agtgatgcag ccacaagcca aagacctacc
     1261 ggagccacca gaagctggta gaggcaagga acaggttctc ccctggagat gagatgagag
     1321 atgagagtct gacagagaac agacagtcag gactgctgcg cagggcccat tcaagagcgg
     1381 tttatgagac aaaattgctc tctgggttaa agggggccga gaaaccccag agctgccaca
     1441 gggcgtgtct aacaaaaggg actggtaggg ctgcggcagt tcccacttca cacggacacc
     1501 ctgggccggt ggccctgcct ctgagggacc gacaggggtc ccttcctggg ccttgcaccc
     1561 aggcctctga agggagggat gagcctcagc catcgttagg acccctctct agcccctcag
     1621 gtgtgtgagc ggagcgcaag ctgcctctgg gagaggacag ttgggatcct gacgacacat
     1681 ccctaggagc cggcatagca caggtttttg tcctgttggg accaagataa ttggggcatt
     1741 aatggaaatg catttcttac ctattttttg tctgattgaa aagtactttg cagtcattta
     1801 gggccctcac acccctataa tcagagcaca tgtcgctcag acaaggcaga aaactgggtc
     1861 accacacagg ctccagagcc tcttggatgc aataagcaaa gagtgcaggc ccaccccctt
     1921 cctgtgcccc accaaggaca tcgccagctc tgtgcagccc ctcagtgatg gccaaattca
     1981 gcaaacaggc tgaatttgga ctatcagggt acaactttat ttttctccca tctctgcctc
     2041 gcatcaacta tgtcagagct ccttttctgt acccctgaac tgccatctca ggaagagtcc
     2101 atggccttct tttagtttga agaataagtc tcattttgat agttcaactc ccttccaggg
     2161 atctaaaagt ccagtcaaat ctattagaaa actctgatct cggacctttc gcagcttctc
     2221 ccctcgcccc tctgtagacc ccgtcttcac tcctccagga acgggatgag ggaggatgga
     2281 atgagggggg aagtgcaaag tcgtcctgct ctctgtgggg ctctcttggc caacaccggc
     2341 cgtcacacct tcgtcttgac aggctggctc tcgtgtgggc ccgtggtggg atctctggaa
     2401 ccagtcccca ccccaccacc cacgcagaga cctctgcccc gggccttctg tggtggacat
     2461 ggagatggct gcccagacac cccccccaaa ggaagggcct gttgcccagc tgctgtcagc
     2521 cccagggaca gtcacagaga gctgtcatcc ttccaacggc aggtccaccg atggctgatg
     2581 gcggcccggg catagggcct ggccagctct gacaggcacc tttgggtctg tttaggcctg
     2641 cagcacagct cggcttccct ctgcccaccc tgcctcctcc cctccctttc atagtgctgc
     2701 tcctgggcca ctccctaata aacaacccca cacaagtgtc tcaagtctgc tccccggaga
     2761 acccgcacgt gaccccttta gcaagaagca catgcactcg gactgacgcc tccccaccca
     2821 tctcagctcc tggccctgtg gcccacccca cccagggtgc tgctgcgggg agccctgagc
     2881 cccgttaggt gagtggggta ccggcaatgc tggctcaagg ccagctccct gcacagtccc
     2941 ccctgagcca cagggacctt ggggacgccc cacttatccc tgccccacct aacgccagca
     3001 gcatggccta cccagctgct gacccatctc cctttgcccc actctgccag cctccccgct
     3061 ccaggcttct cccggctgga agcaggcacc accctccgtc ttcatgtata tgccctcccc
     3121 actacctgta agataccatc catgttttgc tcccaagaac tctcttgaac cctgccttag
     3181 aggtggcatg gagcaggttc tggttttctg caactcagta cgctcccagc cagggcatga
     3241 gacaccaccc tccccttctg gtaggggccc caaactctgc aagctcttcc cccatcactt
     3301 gacttcaaag cagggccaaa gcagtcctgc gaattagctg tgcttgcact agatttggga
     3361 ggaagaagag aggcagagac catggcctcc ccgctgcttt ggctggggag atgttgggtt
     3421 tttcgtcagt gtggagaggt ggtggcggca gtggccgcgg cggcgtcccc atctctgggt
     3481 caaagagagg cagtggtctg gggtcgccca cggcctcaat cactcctgaa gccctgcctt
     3541 cctgatgggg cagaggcagc agctctctag agggtctgca ggggtgttct gggcccttcc
     3601 aacagtgttg taaacactga atttccagta acaaatcctc ttctacctaa aacagccaaa
     3661 gtggtttctg tttcctgcaa ctgtgaacct gactggcacc ggacaccttt tcaaattccg
     3721 aatctcttcc ctcgcctgga tggggtggcg attgttggat tcgtcttgcc atcttttaag
     3781 tcccgcatgg atatgactag cccttctctt tatcagccct tctcatcctc aactgagcac
     3841 gtgaaatcct tggggatcct tgttaaaata caggttctga ttcggtgggt cttgggtgag
     3901 gcctgagagt ctgcatttct gacaagttcc aggtaatgcc cttgcagtat tcccacccca
     3961 gacgtgctga agagcacagc tttagtttgt gagggtactg agcatctgtg ctcctcagct
     4021 gggccattag tggaagttcc agggcagcag gaagaagccc ctttaccgta aatcctgcat
     4081 aagcagggcc tgggccaggt gcgtgggagg tgcaaagatg agtcagacac actcggggcc
     4141 tccaggatca gtgagccatc tcctactggg cacagagccc ggtgggccgt ggggacacag
     4201 cctcccgcct tctccatgcc tggtgactaa aggatttgtc ccgctccccg ggcacaagcc
     4261 agcagtgctt cctgcttgga taagggtttc tgctcctcaa cagacgagca ctttaggagc
     4321 acagtggggc aaggcgctca tcccagaagt ggactaagga aggaaggcgc agggggctgc
     4381 agctgccgag ctgggcctct gccccagtga cagggtgagg gcatcatggg tgggcgagga
     4441 gcagtggaac cactgctgga aggccaggct gggtggcatg ctctgtaaac agccctcctg
     4501 agccatgcga gggtcatcat gggcagagtg ggggcagggt cgggcttgga atgctgaggg
     4561 aaaggactga caaggggctg aagccagact gggaaggccc tgcaagggaa tttggggtgc
     4621 ccctaaggat cctgagcagg gctctaatca gaggcatgac agcatcggga ggagatggag
     4681 gtggtggccc gaggagcaga gacacaggat aaaagggttc caagggcttc cctggtggca
     4741 aagtggttga gagtccgcct gccgatgcag gggacacggg tttgtgccct ggtctgggaa
     4801 gatcccacat gccgcggagc ggctgggccc gtgggccgtg gccgctgagc ctgcgcgtcc
     4861 agagcctgtg ctccgcaaag ggagaggccg caacagtgag aggtccgcgt accgcaaaat
     4921 aaaaaaaaaa aaaaaaaggg ttccaagttc acatgtcctc ccaccagccc cggattatag
     4981 gagcccagct ccgggggcct tattagctat cttttataaa cagacccatt cactcagctg
     5041 gctttcatgt ttcttcaaaa gcagaacact aaatggaaca ccagaaaaga acatgttgtc
     5101 catttagatc acaccaaaag catgtgcttt tgaggggcaa atggaaaata gccagtagag
     5161 cactcaataa atatgtgttg aatgtgtcaa a
//
LOCUS       XM_032620838            5344 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 5 (MPP5),
            transcript variant X1, mRNA.
ACCESSION   XM_032620838
VERSION     XM_032620838.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5344
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5344
                     /gene="MPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, 16 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116748040"
     CDS             459..2486
                     /gene="MPP5"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 5 isoform X1"
                     /protein_id="XP_032476729.1"
                     /db_xref="GeneID:116748040"
                     /translation="MTTSHMNGHVTEESDNEVKNVDLASPEEHQKHREMAVDCPGDLG
                     TRMMPVRRSAQLERIRQQQEDMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTGIDNP
                     IFDTEEGIILESPHYAVKILEVEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQ
                     NAFKIYNAVTVHMNKASPPFPLISNAQDLAQEVQSVLKPIHQKEGQELTALLNAPHIQ
                     ALLLAHDKVAEQEMQLEPITDERVYESIGQYGGETVKIVRIEKARDIPLGATVRNEMD
                     SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP
                     SQQIKLPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQA
                     YREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKVLY
                     NANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFA
                     SAVPHTTRSRRDHEVAGRDYHFVSRQAFEADVAAGKFIEHGEFEKNLYGTSIDSVRQV
                     INSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREI
                     IEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR"
     misc_feature    825..968
                     /gene="MPP5"
                     /note="Region: L27_N; pfam09060"
                     /db_xref="CDD:462666"
     misc_feature    1023..1169
                     /gene="MPP5"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    1221..1460
                     /gene="MPP5"
                     /note="PDZ domain of membrane palmitoylated protein 5
                     (MPP5), Drosophila Stardust, and related domains; Region:
                     PDZ_MPP5-like; cd06798"
                     /db_xref="CDD:467259"
     misc_feature    order(1254..1274,1299..1301,1308..1310,1398..1400,
                     1410..1412,1419..1424)
                     /gene="MPP5"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467259"
     misc_feature    1503..1691
                     /gene="MPP5"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region:
                     SH3_MPP5; cd12036"
                     /db_xref="CDD:212969"
     misc_feature    order(1509..1511,1581..1586)
                     /gene="MPP5"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212969"
     misc_feature    order(1518..1520,1524..1526,1533..1535,1566..1568,
                     1620..1625,1680..1682,1686..1691)
                     /gene="MPP5"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212969"
     misc_feature    order(1914..1916,1932..1934,1983..1985,2004..2006,
                     2013..2015,2040..2042,2109..2111,2124..2126)
                     /gene="MPP5"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     misc_feature    order(1914..1916,1932..1934)
                     /gene="MPP5"
                     /note="G-X2-G-X-G-K; other site"
                     /db_xref="CDD:238026"
     misc_feature    1929..2441
                     /gene="MPP5"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 gcgcggtctc gaggtggagt cgctggaggc ggcgggggcg gctgcggcga ctgcggcgac
       61 tggcggtggg gcgggggcgg ggactaagga ttgtgaggtg gggaatcgcg agtttctgga
      121 ttctttatcc ggtattttaa gtgccgcggg ggaactgtcg tttctgcagt gtttgggaga
      181 ggccagggcg ggagaagcgg cggccgccgt ggcgcggaga gtaagaaagt tagtctgagt
      241 tctgtgaaaa atcagagaag aactaaggat agtagacaag gactttccaa tttgcataat
      301 atttccttca tggatacatt ttcatagcat tattatgtga tgtgagaagt tttttttttt
      361 tttttgaagt aacatggatt ttatactaca gaatcaagag attggcttta taggaaaaat
      421 tgaattataa aaagtggtac gggtttttat agataaccat gacaacatcc catatgaatg
      481 ggcatgttac tgaggaatca gacaacgaag taaaaaatgt tgatcttgca tcaccagagg
      541 aacatcagaa gcaccgagag atggctgttg actgccctgg agatttgggc accaggatga
      601 tgccagtacg tcgaagtgca cagttggaac gtattcggca acaacaggag gacatgaggc
      661 gtaggcgaga ggaagaaggg aaaaaacaag aacttgacct taattcttcc atgagactta
      721 agaaactagc ccaaattcct ccaaaaactg gaatagataa ccctatattt gatacagagg
      781 aaggaattat cttagaaagt cctcattatg ctgtgaaaat attagaagtg gaagacctgt
      841 tttcttcact taaacatatc caacatactt tggtagattc tcagagccag gaggatattt
      901 cactgctttt acaacttgta caaaataaag atttccagaa tgcatttaag atatacaacg
      961 ctgtcacagt acacatgaac aaggccagtc ctccatttcc tcttatctcc aatgcacaag
     1021 accttgcaca agaggtacaa agtgttttga agccaatcca ccagaaggaa ggacaagaat
     1081 taactgcttt gctgaatgct ccacatattc aggcactttt actggcccat gataaggttg
     1141 ctgagcagga aatgcagcta gagcccatta cagatgagag agtttatgaa agcattggcc
     1201 aatatggagg agaaactgta aaaatagttc gtatagaaaa ggctcgagat attccattgg
     1261 gtgctacagt tcgtaatgaa atggattctg tcatcattag tcggatagta aaaggaggtg
     1321 ctgcagaaaa aagtggtctg ttacatgaag gggatgaagt tctggagatc aatggcattg
     1381 aaattcgggg gaaagatgtc aatgaggttt ttgacttgtt gtctgatatg catggtactt
     1441 tgacatttgt tctgattccc agtcaacaga tcaagcttcc tcctgctaag gaaacagtaa
     1501 tccacgtaaa ggctcatttt gactatgacc cctcagatga cccttatgtt ccatgtcgag
     1561 agttaggtct gtcttttcaa aaaggggata tacttcatgt aatcagtcaa gaagatccaa
     1621 attggtggca ggcctacagg gaaggggacg aagataatca gcctctagct gggcttgttc
     1681 cagggaaaag ctttcagcag caaagggaag ccatgaagca aaccatagaa gaagataagg
     1741 agccagaaaa atcaggaaaa ctatggtgtg caaagaagaa taaaaagaaa aggaaaaagg
     1801 ttttatataa tgccaataaa aatgatgatt atgacaatga agagatctta acttatgagg
     1861 aaatgtcact ttatcatcag ccagcaaata ggaaaagacc tatcatttta attggtccac
     1921 agaactgtgg ccagaatgaa ttgcgtcaga ggctcatgaa caaagagaaa gaccgctttg
     1981 catctgcagt tcctcataca actcggagtc ggcgagacca tgaagtagcc ggtagagatt
     2041 accactttgt ttcacggcag gcatttgagg cagacgtagc agctggaaag ttcattgagc
     2101 atggtgaatt tgagaaaaat ttgtatggaa ccagcataga ttctgtacgg caagtgatca
     2161 actcgggcaa aatatgtctt ttaagtcttc gtacacagtc attgaagact ctccggaact
     2221 cagacttgaa accatatatt atcttcattg cacccccttc acaagaaaga cttcgggcgt
     2281 tattggccaa agagggcaag aatccaaagc ctgaagagtt gagagaaatc attgagaaga
     2341 ctagagagat ggagcagaac aatggccact actttgacac agcaattgtg aactcggatc
     2401 ttgataaagc ctatcaggaa ttgcttaggt tgattaacaa acttgatact gaacctcagt
     2461 gggtgccatc cacttggctg aggtgaagga aacatccatt ctgtggcatg attggacttg
     2521 atctggcaaa ctgccaatag gaagatagcc ctgatacttg agcaagtctc tagaaggtgg
     2581 caggcagtat aaattgtaga cctgttctta gatcttgaac tagtgagaag aaaatcccct
     2641 taggcaattg attaacagca ttctttattc tctgtacatg ggctttagag gttcttgcct
     2701 catttgggga ttttaaatgg aagttttcaa cagagcagtt ccattttatc cacataaaaa
     2761 ccttttaatt ctgttttcac ctaaccaagt cttttctgcc tagtcatatt tccatgaaaa
     2821 acttttgtgt gtatacacaa tggtccatgt ctcacatagt aataaatatt gatgttattt
     2881 aacagttaac ttaaatgact tcatgggaat ttgtgggtga agggaaactg cttctctgca
     2941 ctgggcaaga caacagtatt tggttagtca ccagaactac tttaaaaaaa aatggtgcca
     3001 ctttggtctg gagctactct gttaggcttg aattcatttg tatgtctttt aattcataaa
     3061 aacattccgt tagaagcacc aattttttag ctcaaacttg tggatcagac ttcactgcac
     3121 acgtgaaagg tttatgcaaa ggtcacacct gttttagtct ctgatctaaa acatgtacaa
     3181 catatgctga tctttttaaa ggtataatga ttttctgaat ttttttcttt aatcgttgca
     3241 actgattggg taacttttac ttccttttcc tgatctgcat agtacaatag aatgtataag
     3301 ttacattttt atgaatggca gatattgata taaactctgt tgactgttaa gtttcttcct
     3361 catgatgcaa atagtttttt acatgcataa aaggacatag cacatttgac agttttttca
     3421 tttttatata tgagcacagt ataatttgat gactgtgcca tatatgtagg taataaactg
     3481 gaattctgtg attaatatag ttgctgtact gtatactaat atttaataga ttgacaaatg
     3541 gtcattgact acacttgctc agcattggaa taaaattata tgagggaaat gatatgacaa
     3601 ttgactttga gatcagaagg aaaagatgac ctgaaagtca tttgaacgtt ttaggaaaag
     3661 aacattgcag gggaaaagtt aagcatatag aaataggttt ttatcctgat aaggtctgcc
     3721 tcttatgatc agaatgcaac aagctaaatc ataaaacatt taagctaatg aaactttcat
     3781 actgtctcta tagctttgta gctttaaaat tcaacttctg taattggcat ggaaagttaa
     3841 tttgtagtat tttcaaggct taagggatgg tgtgatgtgt gacaaacaac ctcaaatgtg
     3901 aatgtcttga ttttatttat atggtgactt tagctacaat tcctgtcccc aaagctaaac
     3961 actggaataa tactgaattg tcacttaatt taacataagc aactgttttt aatgagtagt
     4021 ttgtctcagt gtcatgtaca tacttgagtt tttctccttt gcataatatt atttgaacaa
     4081 attgtagaca gtttatatgc tgcctttttc tgttgaaatt cacatggcct caaagttggc
     4141 tgtggaatat atcttgtgtg gaaatacttt caagataatg ttccttagga agaaagtaac
     4201 attcctaggt tgaggtaagg aatgccatac atactgtctc ttcaggtctg aaacactcca
     4261 gtttatggca ggaaaatgca aaggtcacag tgattttcag cactgaaaac aaggcaccgt
     4321 aagtacttaa tcttttcagt tttccagtat actttctctt taggaatgaa aggtagtctg
     4381 tggtagacag tggagttttg tgagctgctt ataactgaca actattttca accctacgat
     4441 ctaaaacgtt tgcagtttga gtcaagttag aatgagattt taggcggtgt cagtaagtgg
     4501 ctgctgcgct agtccctgag ttacctgtag accacagggc caacgctagg gccatgtgct
     4561 gtgcagactc aggcatggct ttaacaagca agtccaagtc ccctaccgag gcacatgcta
     4621 tgccgtagta tacttcttaa aaatctaagc tgatgaggta ttttggggat catttaagtc
     4681 ctatatattt ttcttcctca tcagcagtgg tagagggata gaaatgttta tatcccaact
     4741 ttcctcaatc ctggtgatat ggatgtgctg atattcgaca tagtccctac aaagtgaaaa
     4801 ctgagttgtt gctgacttcc ttgaaagaaa atggaaaaaa gccttgctct ccacctagtt
     4861 gtgccctaca ccgctctggc caattccatt tcctgtccct ctgtggttct gattggagac
     4921 cccagtgtgg agggaggtct taaccactga taggaatgat accaatcgct aatgaaatgt
     4981 acattagttc aagtaaggaa ataatcttcc tttactaaat ttccttaagt cagaacaaac
     5041 agaaaggaga atagtgttta gattaatcca gatttgcttt ctatgaaaat ctaatgtctg
     5101 gatttttttt ttccttttct catggcctaa ggaataattt gaatgtaatt ctgtgaatgt
     5161 gtgtggaaaa tttaaaccag ggatttagcc ttaataaagg taacctttct gacagctatt
     5221 gttaattttc ctttgtactc ttatcctgcc tgtatctatc tgcactctgt tgttttgaga
     5281 tgtaacactg cacattgtaa tgtaaaaata aaaagtaaaa ttatatttca aatttaaaaa
     5341 gtca
//
LOCUS       XM_032620847            5584 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 5 (MPP5),
            transcript variant X2, mRNA.
ACCESSION   XM_032620847
VERSION     XM_032620847.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5584
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5584
                     /gene="MPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 long SRA reads, 16 Proteins, and
                     91% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116748040"
     CDS             699..2726
                     /gene="MPP5"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 5 isoform X1"
                     /protein_id="XP_032476738.1"
                     /db_xref="GeneID:116748040"
                     /translation="MTTSHMNGHVTEESDNEVKNVDLASPEEHQKHREMAVDCPGDLG
                     TRMMPVRRSAQLERIRQQQEDMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTGIDNP
                     IFDTEEGIILESPHYAVKILEVEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQ
                     NAFKIYNAVTVHMNKASPPFPLISNAQDLAQEVQSVLKPIHQKEGQELTALLNAPHIQ
                     ALLLAHDKVAEQEMQLEPITDERVYESIGQYGGETVKIVRIEKARDIPLGATVRNEMD
                     SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP
                     SQQIKLPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQA
                     YREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKVLY
                     NANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFA
                     SAVPHTTRSRRDHEVAGRDYHFVSRQAFEADVAAGKFIEHGEFEKNLYGTSIDSVRQV
                     INSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREI
                     IEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR"
     misc_feature    1065..1208
                     /gene="MPP5"
                     /note="Region: L27_N; pfam09060"
                     /db_xref="CDD:462666"
     misc_feature    1263..1409
                     /gene="MPP5"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    1461..1700
                     /gene="MPP5"
                     /note="PDZ domain of membrane palmitoylated protein 5
                     (MPP5), Drosophila Stardust, and related domains; Region:
                     PDZ_MPP5-like; cd06798"
                     /db_xref="CDD:467259"
     misc_feature    order(1494..1514,1539..1541,1548..1550,1638..1640,
                     1650..1652,1659..1664)
                     /gene="MPP5"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467259"
     misc_feature    1743..1931
                     /gene="MPP5"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region:
                     SH3_MPP5; cd12036"
                     /db_xref="CDD:212969"
     misc_feature    order(1749..1751,1821..1826)
                     /gene="MPP5"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212969"
     misc_feature    order(1758..1760,1764..1766,1773..1775,1806..1808,
                     1860..1865,1920..1922,1926..1931)
                     /gene="MPP5"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212969"
     misc_feature    order(2154..2156,2172..2174,2223..2225,2244..2246,
                     2253..2255,2280..2282,2349..2351,2364..2366)
                     /gene="MPP5"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     misc_feature    order(2154..2156,2172..2174)
                     /gene="MPP5"
                     /note="G-X2-G-X-G-K; other site"
                     /db_xref="CDD:238026"
     misc_feature    2169..2681
                     /gene="MPP5"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 gcgccgggcc cgggcgggac cccgggctgc tgcaggcagc cggcgccggg ccggcagcgg
       61 agggcgtgag cccaaccttt gtccctcgga tgaacgctgt ctggcggtgc ccgctccctc
      121 tggcttggtg aacgactcac ctcggcgggg gctcctgccc ggccggcccg aggtgcaggg
      181 aggcgccttc tctctgcgcc cgcgctcccg agttcgcgac tctcttgact ccctccaggc
      241 agggtccggg agatcggcgg ggcgaagaac acttttcttt agaagacgga atgtagttgg
      301 cgtttctctg cccgactcag ctgctggtat tcggctgctc gctgcattct ttaaacaaat
      361 aaacaacttg cttcctcgta accattttca agaagagcct aatcttcttc atggtttctg
      421 ataatttact ctaagtttgc aaggtgaact ttgaagatta gtaagaaagt tagtctgagt
      481 tctgtgaaaa atcagagaag aactaaggat agtagacaag gactttccaa tttgcataat
      541 atttccttca tggatacatt ttcatagcat tattatgtga tgtgagaagt tttttttttt
      601 tttttgaagt aacatggatt ttatactaca gaatcaagag attggcttta taggaaaaat
      661 tgaattataa aaagtggtac gggtttttat agataaccat gacaacatcc catatgaatg
      721 ggcatgttac tgaggaatca gacaacgaag taaaaaatgt tgatcttgca tcaccagagg
      781 aacatcagaa gcaccgagag atggctgttg actgccctgg agatttgggc accaggatga
      841 tgccagtacg tcgaagtgca cagttggaac gtattcggca acaacaggag gacatgaggc
      901 gtaggcgaga ggaagaaggg aaaaaacaag aacttgacct taattcttcc atgagactta
      961 agaaactagc ccaaattcct ccaaaaactg gaatagataa ccctatattt gatacagagg
     1021 aaggaattat cttagaaagt cctcattatg ctgtgaaaat attagaagtg gaagacctgt
     1081 tttcttcact taaacatatc caacatactt tggtagattc tcagagccag gaggatattt
     1141 cactgctttt acaacttgta caaaataaag atttccagaa tgcatttaag atatacaacg
     1201 ctgtcacagt acacatgaac aaggccagtc ctccatttcc tcttatctcc aatgcacaag
     1261 accttgcaca agaggtacaa agtgttttga agccaatcca ccagaaggaa ggacaagaat
     1321 taactgcttt gctgaatgct ccacatattc aggcactttt actggcccat gataaggttg
     1381 ctgagcagga aatgcagcta gagcccatta cagatgagag agtttatgaa agcattggcc
     1441 aatatggagg agaaactgta aaaatagttc gtatagaaaa ggctcgagat attccattgg
     1501 gtgctacagt tcgtaatgaa atggattctg tcatcattag tcggatagta aaaggaggtg
     1561 ctgcagaaaa aagtggtctg ttacatgaag gggatgaagt tctggagatc aatggcattg
     1621 aaattcgggg gaaagatgtc aatgaggttt ttgacttgtt gtctgatatg catggtactt
     1681 tgacatttgt tctgattccc agtcaacaga tcaagcttcc tcctgctaag gaaacagtaa
     1741 tccacgtaaa ggctcatttt gactatgacc cctcagatga cccttatgtt ccatgtcgag
     1801 agttaggtct gtcttttcaa aaaggggata tacttcatgt aatcagtcaa gaagatccaa
     1861 attggtggca ggcctacagg gaaggggacg aagataatca gcctctagct gggcttgttc
     1921 cagggaaaag ctttcagcag caaagggaag ccatgaagca aaccatagaa gaagataagg
     1981 agccagaaaa atcaggaaaa ctatggtgtg caaagaagaa taaaaagaaa aggaaaaagg
     2041 ttttatataa tgccaataaa aatgatgatt atgacaatga agagatctta acttatgagg
     2101 aaatgtcact ttatcatcag ccagcaaata ggaaaagacc tatcatttta attggtccac
     2161 agaactgtgg ccagaatgaa ttgcgtcaga ggctcatgaa caaagagaaa gaccgctttg
     2221 catctgcagt tcctcataca actcggagtc ggcgagacca tgaagtagcc ggtagagatt
     2281 accactttgt ttcacggcag gcatttgagg cagacgtagc agctggaaag ttcattgagc
     2341 atggtgaatt tgagaaaaat ttgtatggaa ccagcataga ttctgtacgg caagtgatca
     2401 actcgggcaa aatatgtctt ttaagtcttc gtacacagtc attgaagact ctccggaact
     2461 cagacttgaa accatatatt atcttcattg cacccccttc acaagaaaga cttcgggcgt
     2521 tattggccaa agagggcaag aatccaaagc ctgaagagtt gagagaaatc attgagaaga
     2581 ctagagagat ggagcagaac aatggccact actttgacac agcaattgtg aactcggatc
     2641 ttgataaagc ctatcaggaa ttgcttaggt tgattaacaa acttgatact gaacctcagt
     2701 gggtgccatc cacttggctg aggtgaagga aacatccatt ctgtggcatg attggacttg
     2761 atctggcaaa ctgccaatag gaagatagcc ctgatacttg agcaagtctc tagaaggtgg
     2821 caggcagtat aaattgtaga cctgttctta gatcttgaac tagtgagaag aaaatcccct
     2881 taggcaattg attaacagca ttctttattc tctgtacatg ggctttagag gttcttgcct
     2941 catttgggga ttttaaatgg aagttttcaa cagagcagtt ccattttatc cacataaaaa
     3001 ccttttaatt ctgttttcac ctaaccaagt cttttctgcc tagtcatatt tccatgaaaa
     3061 acttttgtgt gtatacacaa tggtccatgt ctcacatagt aataaatatt gatgttattt
     3121 aacagttaac ttaaatgact tcatgggaat ttgtgggtga agggaaactg cttctctgca
     3181 ctgggcaaga caacagtatt tggttagtca ccagaactac tttaaaaaaa aatggtgcca
     3241 ctttggtctg gagctactct gttaggcttg aattcatttg tatgtctttt aattcataaa
     3301 aacattccgt tagaagcacc aattttttag ctcaaacttg tggatcagac ttcactgcac
     3361 acgtgaaagg tttatgcaaa ggtcacacct gttttagtct ctgatctaaa acatgtacaa
     3421 catatgctga tctttttaaa ggtataatga ttttctgaat ttttttcttt aatcgttgca
     3481 actgattggg taacttttac ttccttttcc tgatctgcat agtacaatag aatgtataag
     3541 ttacattttt atgaatggca gatattgata taaactctgt tgactgttaa gtttcttcct
     3601 catgatgcaa atagtttttt acatgcataa aaggacatag cacatttgac agttttttca
     3661 tttttatata tgagcacagt ataatttgat gactgtgcca tatatgtagg taataaactg
     3721 gaattctgtg attaatatag ttgctgtact gtatactaat atttaataga ttgacaaatg
     3781 gtcattgact acacttgctc agcattggaa taaaattata tgagggaaat gatatgacaa
     3841 ttgactttga gatcagaagg aaaagatgac ctgaaagtca tttgaacgtt ttaggaaaag
     3901 aacattgcag gggaaaagtt aagcatatag aaataggttt ttatcctgat aaggtctgcc
     3961 tcttatgatc agaatgcaac aagctaaatc ataaaacatt taagctaatg aaactttcat
     4021 actgtctcta tagctttgta gctttaaaat tcaacttctg taattggcat ggaaagttaa
     4081 tttgtagtat tttcaaggct taagggatgg tgtgatgtgt gacaaacaac ctcaaatgtg
     4141 aatgtcttga ttttatttat atggtgactt tagctacaat tcctgtcccc aaagctaaac
     4201 actggaataa tactgaattg tcacttaatt taacataagc aactgttttt aatgagtagt
     4261 ttgtctcagt gtcatgtaca tacttgagtt tttctccttt gcataatatt atttgaacaa
     4321 attgtagaca gtttatatgc tgcctttttc tgttgaaatt cacatggcct caaagttggc
     4381 tgtggaatat atcttgtgtg gaaatacttt caagataatg ttccttagga agaaagtaac
     4441 attcctaggt tgaggtaagg aatgccatac atactgtctc ttcaggtctg aaacactcca
     4501 gtttatggca ggaaaatgca aaggtcacag tgattttcag cactgaaaac aaggcaccgt
     4561 aagtacttaa tcttttcagt tttccagtat actttctctt taggaatgaa aggtagtctg
     4621 tggtagacag tggagttttg tgagctgctt ataactgaca actattttca accctacgat
     4681 ctaaaacgtt tgcagtttga gtcaagttag aatgagattt taggcggtgt cagtaagtgg
     4741 ctgctgcgct agtccctgag ttacctgtag accacagggc caacgctagg gccatgtgct
     4801 gtgcagactc aggcatggct ttaacaagca agtccaagtc ccctaccgag gcacatgcta
     4861 tgccgtagta tacttcttaa aaatctaagc tgatgaggta ttttggggat catttaagtc
     4921 ctatatattt ttcttcctca tcagcagtgg tagagggata gaaatgttta tatcccaact
     4981 ttcctcaatc ctggtgatat ggatgtgctg atattcgaca tagtccctac aaagtgaaaa
     5041 ctgagttgtt gctgacttcc ttgaaagaaa atggaaaaaa gccttgctct ccacctagtt
     5101 gtgccctaca ccgctctggc caattccatt tcctgtccct ctgtggttct gattggagac
     5161 cccagtgtgg agggaggtct taaccactga taggaatgat accaatcgct aatgaaatgt
     5221 acattagttc aagtaaggaa ataatcttcc tttactaaat ttccttaagt cagaacaaac
     5281 agaaaggaga atagtgttta gattaatcca gatttgcttt ctatgaaaat ctaatgtctg
     5341 gatttttttt ttccttttct catggcctaa ggaataattt gaatgtaatt ctgtgaatgt
     5401 gtgtggaaaa tttaaaccag ggatttagcc ttaataaagg taacctttct gacagctatt
     5461 gttaattttc ctttgtactc ttatcctgcc tgtatctatc tgcactctgt tgttttgaga
     5521 tgtaacactg cacattgtaa tgtaaaaata aaaagtaaaa ttatatttca aatttaaaaa
     5581 gtca
//
LOCUS       XM_032620858            5270 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 5 (MPP5),
            transcript variant X3, mRNA.
ACCESSION   XM_032620858
VERSION     XM_032620858.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5270
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5270
                     /gene="MPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 long SRA reads, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116748040"
     CDS             385..2412
                     /gene="MPP5"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 5 isoform X1"
                     /protein_id="XP_032476749.1"
                     /db_xref="GeneID:116748040"
                     /translation="MTTSHMNGHVTEESDNEVKNVDLASPEEHQKHREMAVDCPGDLG
                     TRMMPVRRSAQLERIRQQQEDMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTGIDNP
                     IFDTEEGIILESPHYAVKILEVEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQ
                     NAFKIYNAVTVHMNKASPPFPLISNAQDLAQEVQSVLKPIHQKEGQELTALLNAPHIQ
                     ALLLAHDKVAEQEMQLEPITDERVYESIGQYGGETVKIVRIEKARDIPLGATVRNEMD
                     SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP
                     SQQIKLPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQA
                     YREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKVLY
                     NANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFA
                     SAVPHTTRSRRDHEVAGRDYHFVSRQAFEADVAAGKFIEHGEFEKNLYGTSIDSVRQV
                     INSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREI
                     IEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR"
     misc_feature    751..894
                     /gene="MPP5"
                     /note="Region: L27_N; pfam09060"
                     /db_xref="CDD:462666"
     misc_feature    949..1095
                     /gene="MPP5"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    1147..1386
                     /gene="MPP5"
                     /note="PDZ domain of membrane palmitoylated protein 5
                     (MPP5), Drosophila Stardust, and related domains; Region:
                     PDZ_MPP5-like; cd06798"
                     /db_xref="CDD:467259"
     misc_feature    order(1180..1200,1225..1227,1234..1236,1324..1326,
                     1336..1338,1345..1350)
                     /gene="MPP5"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467259"
     misc_feature    1429..1617
                     /gene="MPP5"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region:
                     SH3_MPP5; cd12036"
                     /db_xref="CDD:212969"
     misc_feature    order(1435..1437,1507..1512)
                     /gene="MPP5"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212969"
     misc_feature    order(1444..1446,1450..1452,1459..1461,1492..1494,
                     1546..1551,1606..1608,1612..1617)
                     /gene="MPP5"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212969"
     misc_feature    order(1840..1842,1858..1860,1909..1911,1930..1932,
                     1939..1941,1966..1968,2035..2037,2050..2052)
                     /gene="MPP5"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     misc_feature    order(1840..1842,1858..1860)
                     /gene="MPP5"
                     /note="G-X2-G-X-G-K; other site"
                     /db_xref="CDD:238026"
     misc_feature    1855..2367
                     /gene="MPP5"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 ggagaaatgg tttattactt atgtatatgg agaccttcaa agaaaagagt tgaagaccaa
       61 agaagcagag agactgaatg ataaattgtg gaatccagac aagacaaagg aaaagaggct
      121 tttagaggct gtaaattgtg ggaagagtaa gaaagttagt ctgagttctg tgaaaaatca
      181 gagaagaact aaggatagta gacaaggact ttccaatttg cataatattt ccttcatgga
      241 tacattttca tagcattatt atgtgatgtg agaagttttt tttttttttt tgaagtaaca
      301 tggattttat actacagaat caagagattg gctttatagg aaaaattgaa ttataaaaag
      361 tggtacgggt ttttatagat aaccatgaca acatcccata tgaatgggca tgttactgag
      421 gaatcagaca acgaagtaaa aaatgttgat cttgcatcac cagaggaaca tcagaagcac
      481 cgagagatgg ctgttgactg ccctggagat ttgggcacca ggatgatgcc agtacgtcga
      541 agtgcacagt tggaacgtat tcggcaacaa caggaggaca tgaggcgtag gcgagaggaa
      601 gaagggaaaa aacaagaact tgaccttaat tcttccatga gacttaagaa actagcccaa
      661 attcctccaa aaactggaat agataaccct atatttgata cagaggaagg aattatctta
      721 gaaagtcctc attatgctgt gaaaatatta gaagtggaag acctgttttc ttcacttaaa
      781 catatccaac atactttggt agattctcag agccaggagg atatttcact gcttttacaa
      841 cttgtacaaa ataaagattt ccagaatgca tttaagatat acaacgctgt cacagtacac
      901 atgaacaagg ccagtcctcc atttcctctt atctccaatg cacaagacct tgcacaagag
      961 gtacaaagtg ttttgaagcc aatccaccag aaggaaggac aagaattaac tgctttgctg
     1021 aatgctccac atattcaggc acttttactg gcccatgata aggttgctga gcaggaaatg
     1081 cagctagagc ccattacaga tgagagagtt tatgaaagca ttggccaata tggaggagaa
     1141 actgtaaaaa tagttcgtat agaaaaggct cgagatattc cattgggtgc tacagttcgt
     1201 aatgaaatgg attctgtcat cattagtcgg atagtaaaag gaggtgctgc agaaaaaagt
     1261 ggtctgttac atgaagggga tgaagttctg gagatcaatg gcattgaaat tcgggggaaa
     1321 gatgtcaatg aggtttttga cttgttgtct gatatgcatg gtactttgac atttgttctg
     1381 attcccagtc aacagatcaa gcttcctcct gctaaggaaa cagtaatcca cgtaaaggct
     1441 cattttgact atgacccctc agatgaccct tatgttccat gtcgagagtt aggtctgtct
     1501 tttcaaaaag gggatatact tcatgtaatc agtcaagaag atccaaattg gtggcaggcc
     1561 tacagggaag gggacgaaga taatcagcct ctagctgggc ttgttccagg gaaaagcttt
     1621 cagcagcaaa gggaagccat gaagcaaacc atagaagaag ataaggagcc agaaaaatca
     1681 ggaaaactat ggtgtgcaaa gaagaataaa aagaaaagga aaaaggtttt atataatgcc
     1741 aataaaaatg atgattatga caatgaagag atcttaactt atgaggaaat gtcactttat
     1801 catcagccag caaataggaa aagacctatc attttaattg gtccacagaa ctgtggccag
     1861 aatgaattgc gtcagaggct catgaacaaa gagaaagacc gctttgcatc tgcagttcct
     1921 catacaactc ggagtcggcg agaccatgaa gtagccggta gagattacca ctttgtttca
     1981 cggcaggcat ttgaggcaga cgtagcagct ggaaagttca ttgagcatgg tgaatttgag
     2041 aaaaatttgt atggaaccag catagattct gtacggcaag tgatcaactc gggcaaaata
     2101 tgtcttttaa gtcttcgtac acagtcattg aagactctcc ggaactcaga cttgaaacca
     2161 tatattatct tcattgcacc cccttcacaa gaaagacttc gggcgttatt ggccaaagag
     2221 ggcaagaatc caaagcctga agagttgaga gaaatcattg agaagactag agagatggag
     2281 cagaacaatg gccactactt tgacacagca attgtgaact cggatcttga taaagcctat
     2341 caggaattgc ttaggttgat taacaaactt gatactgaac ctcagtgggt gccatccact
     2401 tggctgaggt gaaggaaaca tccattctgt ggcatgattg gacttgatct ggcaaactgc
     2461 caataggaag atagccctga tacttgagca agtctctaga aggtggcagg cagtataaat
     2521 tgtagacctg ttcttagatc ttgaactagt gagaagaaaa tccccttagg caattgatta
     2581 acagcattct ttattctctg tacatgggct ttagaggttc ttgcctcatt tggggatttt
     2641 aaatggaagt tttcaacaga gcagttccat tttatccaca taaaaacctt ttaattctgt
     2701 tttcacctaa ccaagtcttt tctgcctagt catatttcca tgaaaaactt ttgtgtgtat
     2761 acacaatggt ccatgtctca catagtaata aatattgatg ttatttaaca gttaacttaa
     2821 atgacttcat gggaatttgt gggtgaaggg aaactgcttc tctgcactgg gcaagacaac
     2881 agtatttggt tagtcaccag aactacttta aaaaaaaatg gtgccacttt ggtctggagc
     2941 tactctgtta ggcttgaatt catttgtatg tcttttaatt cataaaaaca ttccgttaga
     3001 agcaccaatt ttttagctca aacttgtgga tcagacttca ctgcacacgt gaaaggttta
     3061 tgcaaaggtc acacctgttt tagtctctga tctaaaacat gtacaacata tgctgatctt
     3121 tttaaaggta taatgatttt ctgaattttt ttctttaatc gttgcaactg attgggtaac
     3181 ttttacttcc ttttcctgat ctgcatagta caatagaatg tataagttac atttttatga
     3241 atggcagata ttgatataaa ctctgttgac tgttaagttt cttcctcatg atgcaaatag
     3301 ttttttacat gcataaaagg acatagcaca tttgacagtt ttttcatttt tatatatgag
     3361 cacagtataa tttgatgact gtgccatata tgtaggtaat aaactggaat tctgtgatta
     3421 atatagttgc tgtactgtat actaatattt aatagattga caaatggtca ttgactacac
     3481 ttgctcagca ttggaataaa attatatgag ggaaatgata tgacaattga ctttgagatc
     3541 agaaggaaaa gatgacctga aagtcatttg aacgttttag gaaaagaaca ttgcagggga
     3601 aaagttaagc atatagaaat aggtttttat cctgataagg tctgcctctt atgatcagaa
     3661 tgcaacaagc taaatcataa aacatttaag ctaatgaaac tttcatactg tctctatagc
     3721 tttgtagctt taaaattcaa cttctgtaat tggcatggaa agttaatttg tagtattttc
     3781 aaggcttaag ggatggtgtg atgtgtgaca aacaacctca aatgtgaatg tcttgatttt
     3841 atttatatgg tgactttagc tacaattcct gtccccaaag ctaaacactg gaataatact
     3901 gaattgtcac ttaatttaac ataagcaact gtttttaatg agtagtttgt ctcagtgtca
     3961 tgtacatact tgagtttttc tcctttgcat aatattattt gaacaaattg tagacagttt
     4021 atatgctgcc tttttctgtt gaaattcaca tggcctcaaa gttggctgtg gaatatatct
     4081 tgtgtggaaa tactttcaag ataatgttcc ttaggaagaa agtaacattc ctaggttgag
     4141 gtaaggaatg ccatacatac tgtctcttca ggtctgaaac actccagttt atggcaggaa
     4201 aatgcaaagg tcacagtgat tttcagcact gaaaacaagg caccgtaagt acttaatctt
     4261 ttcagttttc cagtatactt tctctttagg aatgaaaggt agtctgtggt agacagtgga
     4321 gttttgtgag ctgcttataa ctgacaacta ttttcaaccc tacgatctaa aacgtttgca
     4381 gtttgagtca agttagaatg agattttagg cggtgtcagt aagtggctgc tgcgctagtc
     4441 cctgagttac ctgtagacca cagggccaac gctagggcca tgtgctgtgc agactcaggc
     4501 atggctttaa caagcaagtc caagtcccct accgaggcac atgctatgcc gtagtatact
     4561 tcttaaaaat ctaagctgat gaggtatttt ggggatcatt taagtcctat atatttttct
     4621 tcctcatcag cagtggtaga gggatagaaa tgtttatatc ccaactttcc tcaatcctgg
     4681 tgatatggat gtgctgatat tcgacatagt ccctacaaag tgaaaactga gttgttgctg
     4741 acttccttga aagaaaatgg aaaaaagcct tgctctccac ctagttgtgc cctacaccgc
     4801 tctggccaat tccatttcct gtccctctgt ggttctgatt ggagacccca gtgtggaggg
     4861 aggtcttaac cactgatagg aatgatacca atcgctaatg aaatgtacat tagttcaagt
     4921 aaggaaataa tcttccttta ctaaatttcc ttaagtcaga acaaacagaa aggagaatag
     4981 tgtttagatt aatccagatt tgctttctat gaaaatctaa tgtctggatt ttttttttcc
     5041 ttttctcatg gcctaaggaa taatttgaat gtaattctgt gaatgtgtgt ggaaaattta
     5101 aaccagggat ttagccttaa taaaggtaac ctttctgaca gctattgtta attttccttt
     5161 gtactcttat cctgcctgta tctatctgca ctctgttgtt ttgagatgta acactgcaca
     5221 ttgtaatgta aaaataaaaa gtaaaattat atttcaaatt taaaaagtca
//
LOCUS       XM_032620866            5159 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus membrane palmitoylated protein 5 (MPP5),
            transcript variant X4, mRNA.
ACCESSION   XM_032620866
VERSION     XM_032620866.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5159
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5159
                     /gene="MPP5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116748040"
     CDS             790..2301
                     /gene="MPP5"
                     /codon_start=1
                     /product="MAGUK p55 subfamily member 5 isoform X2"
                     /protein_id="XP_032476757.1"
                     /db_xref="GeneID:116748040"
                     /translation="MNKASPPFPLISNAQDLAQEVQSVLKPIHQKEGQELTALLNAPH
                     IQALLLAHDKVAEQEMQLEPITDERVYESIGQYGGETVKIVRIEKARDIPLGATVRNE
                     MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL
                     IPSQQIKLPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWW
                     QAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKV
                     LYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDR
                     FASAVPHTTRSRRDHEVAGRDYHFVSRQAFEADVAAGKFIEHGEFEKNLYGTSIDSVR
                     QVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELR
                     EIIEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR"
     misc_feature    838..984
                     /gene="MPP5"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; Region: L27; smart00569"
                     /db_xref="CDD:197794"
     misc_feature    1036..1275
                     /gene="MPP5"
                     /note="PDZ domain of membrane palmitoylated protein 5
                     (MPP5), Drosophila Stardust, and related domains; Region:
                     PDZ_MPP5-like; cd06798"
                     /db_xref="CDD:467259"
     misc_feature    order(1069..1089,1114..1116,1123..1125,1213..1215,
                     1225..1227,1234..1239)
                     /gene="MPP5"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467259"
     misc_feature    1318..1506
                     /gene="MPP5"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region:
                     SH3_MPP5; cd12036"
                     /db_xref="CDD:212969"
     misc_feature    order(1324..1326,1396..1401)
                     /gene="MPP5"
                     /note="GuK domain interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212969"
     misc_feature    order(1333..1335,1339..1341,1348..1350,1381..1383,
                     1435..1440,1495..1497,1501..1506)
                     /gene="MPP5"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212969"
     misc_feature    order(1729..1731,1747..1749,1798..1800,1819..1821,
                     1828..1830,1855..1857,1924..1926,1939..1941)
                     /gene="MPP5"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     misc_feature    order(1729..1731,1747..1749)
                     /gene="MPP5"
                     /note="G-X2-G-X-G-K; other site"
                     /db_xref="CDD:238026"
     misc_feature    1744..2256
                     /gene="MPP5"
                     /note="Guanylate kinase homologues; Region: GuKc;
                     smart00072"
                     /db_xref="CDD:214504"
ORIGIN      
        1 aaattttttg ctttttccta tttctttttg tatgctgctt ggttaatttt tctacaacta
       61 tagattaaag tacagatata ttttcttcca acttgcaatc cagtgtggtt ttaaaagtta
      121 tctttgtgca atctttgaac gtaaggctgt ttattatatt ttattttaaa gtaatttgaa
      181 atgtagtacc aggtatctgt aagtcatttc ttggttagga gaatatttca tattttgaga
      241 aataagtgat agatttaatt ttagtaacat tcaacacaaa tgtgttaagt gtaggaaaca
      301 tgaaaagtta taaggttgtt attgtcagtc aaatcttcag tttttggata tactcagttt
      361 taagttttca ttttaaaatg aagtatatta gctttgtatc agacattttt tttcctgttt
      421 ataatttgct aacacatcag actacaacag tactccctta aagttgtatg agtctccctg
      481 ccagtgtttt gattaatata cacatgccag gagacaactt ctcagccttt ttcacagcca
      541 gaaacagcaa ccttgtttta aatgagggaa ggatggggca actgatttat ttctttgaga
      601 gggagccttc agtttccaaa tgatacatca tcatttatct aagtggaaga cctgttttct
      661 tcacttaaac atatccaaca tactttggta gattctcaga gccaggagga tatttcactg
      721 cttttacaac ttgtacaaaa taaagatttc cagaatgcat ttaagatata caacgctgtc
      781 acagtacaca tgaacaaggc cagtcctcca tttcctctta tctccaatgc acaagacctt
      841 gcacaagagg tacaaagtgt tttgaagcca atccaccaga aggaaggaca agaattaact
      901 gctttgctga atgctccaca tattcaggca cttttactgg cccatgataa ggttgctgag
      961 caggaaatgc agctagagcc cattacagat gagagagttt atgaaagcat tggccaatat
     1021 ggaggagaaa ctgtaaaaat agttcgtata gaaaaggctc gagatattcc attgggtgct
     1081 acagttcgta atgaaatgga ttctgtcatc attagtcgga tagtaaaagg aggtgctgca
     1141 gaaaaaagtg gtctgttaca tgaaggggat gaagttctgg agatcaatgg cattgaaatt
     1201 cgggggaaag atgtcaatga ggtttttgac ttgttgtctg atatgcatgg tactttgaca
     1261 tttgttctga ttcccagtca acagatcaag cttcctcctg ctaaggaaac agtaatccac
     1321 gtaaaggctc attttgacta tgacccctca gatgaccctt atgttccatg tcgagagtta
     1381 ggtctgtctt ttcaaaaagg ggatatactt catgtaatca gtcaagaaga tccaaattgg
     1441 tggcaggcct acagggaagg ggacgaagat aatcagcctc tagctgggct tgttccaggg
     1501 aaaagctttc agcagcaaag ggaagccatg aagcaaacca tagaagaaga taaggagcca
     1561 gaaaaatcag gaaaactatg gtgtgcaaag aagaataaaa agaaaaggaa aaaggtttta
     1621 tataatgcca ataaaaatga tgattatgac aatgaagaga tcttaactta tgaggaaatg
     1681 tcactttatc atcagccagc aaataggaaa agacctatca ttttaattgg tccacagaac
     1741 tgtggccaga atgaattgcg tcagaggctc atgaacaaag agaaagaccg ctttgcatct
     1801 gcagttcctc atacaactcg gagtcggcga gaccatgaag tagccggtag agattaccac
     1861 tttgtttcac ggcaggcatt tgaggcagac gtagcagctg gaaagttcat tgagcatggt
     1921 gaatttgaga aaaatttgta tggaaccagc atagattctg tacggcaagt gatcaactcg
     1981 ggcaaaatat gtcttttaag tcttcgtaca cagtcattga agactctccg gaactcagac
     2041 ttgaaaccat atattatctt cattgcaccc ccttcacaag aaagacttcg ggcgttattg
     2101 gccaaagagg gcaagaatcc aaagcctgaa gagttgagag aaatcattga gaagactaga
     2161 gagatggagc agaacaatgg ccactacttt gacacagcaa ttgtgaactc ggatcttgat
     2221 aaagcctatc aggaattgct taggttgatt aacaaacttg atactgaacc tcagtgggtg
     2281 ccatccactt ggctgaggtg aaggaaacat ccattctgtg gcatgattgg acttgatctg
     2341 gcaaactgcc aataggaaga tagccctgat acttgagcaa gtctctagaa ggtggcaggc
     2401 agtataaatt gtagacctgt tcttagatct tgaactagtg agaagaaaat ccccttaggc
     2461 aattgattaa cagcattctt tattctctgt acatgggctt tagaggttct tgcctcattt
     2521 ggggatttta aatggaagtt ttcaacagag cagttccatt ttatccacat aaaaaccttt
     2581 taattctgtt ttcacctaac caagtctttt ctgcctagtc atatttccat gaaaaacttt
     2641 tgtgtgtata cacaatggtc catgtctcac atagtaataa atattgatgt tatttaacag
     2701 ttaacttaaa tgacttcatg ggaatttgtg ggtgaaggga aactgcttct ctgcactggg
     2761 caagacaaca gtatttggtt agtcaccaga actactttaa aaaaaaatgg tgccactttg
     2821 gtctggagct actctgttag gcttgaattc atttgtatgt cttttaattc ataaaaacat
     2881 tccgttagaa gcaccaattt tttagctcaa acttgtggat cagacttcac tgcacacgtg
     2941 aaaggtttat gcaaaggtca cacctgtttt agtctctgat ctaaaacatg tacaacatat
     3001 gctgatcttt ttaaaggtat aatgattttc tgaatttttt tctttaatcg ttgcaactga
     3061 ttgggtaact tttacttcct tttcctgatc tgcatagtac aatagaatgt ataagttaca
     3121 tttttatgaa tggcagatat tgatataaac tctgttgact gttaagtttc ttcctcatga
     3181 tgcaaatagt tttttacatg cataaaagga catagcacat ttgacagttt tttcattttt
     3241 atatatgagc acagtataat ttgatgactg tgccatatat gtaggtaata aactggaatt
     3301 ctgtgattaa tatagttgct gtactgtata ctaatattta atagattgac aaatggtcat
     3361 tgactacact tgctcagcat tggaataaaa ttatatgagg gaaatgatat gacaattgac
     3421 tttgagatca gaaggaaaag atgacctgaa agtcatttga acgttttagg aaaagaacat
     3481 tgcaggggaa aagttaagca tatagaaata ggtttttatc ctgataaggt ctgcctctta
     3541 tgatcagaat gcaacaagct aaatcataaa acatttaagc taatgaaact ttcatactgt
     3601 ctctatagct ttgtagcttt aaaattcaac ttctgtaatt ggcatggaaa gttaatttgt
     3661 agtattttca aggcttaagg gatggtgtga tgtgtgacaa acaacctcaa atgtgaatgt
     3721 cttgatttta tttatatggt gactttagct acaattcctg tccccaaagc taaacactgg
     3781 aataatactg aattgtcact taatttaaca taagcaactg tttttaatga gtagtttgtc
     3841 tcagtgtcat gtacatactt gagtttttct cctttgcata atattatttg aacaaattgt
     3901 agacagttta tatgctgcct ttttctgttg aaattcacat ggcctcaaag ttggctgtgg
     3961 aatatatctt gtgtggaaat actttcaaga taatgttcct taggaagaaa gtaacattcc
     4021 taggttgagg taaggaatgc catacatact gtctcttcag gtctgaaaca ctccagttta
     4081 tggcaggaaa atgcaaaggt cacagtgatt ttcagcactg aaaacaaggc accgtaagta
     4141 cttaatcttt tcagttttcc agtatacttt ctctttagga atgaaaggta gtctgtggta
     4201 gacagtggag ttttgtgagc tgcttataac tgacaactat tttcaaccct acgatctaaa
     4261 acgtttgcag tttgagtcaa gttagaatga gattttaggc ggtgtcagta agtggctgct
     4321 gcgctagtcc ctgagttacc tgtagaccac agggccaacg ctagggccat gtgctgtgca
     4381 gactcaggca tggctttaac aagcaagtcc aagtccccta ccgaggcaca tgctatgccg
     4441 tagtatactt cttaaaaatc taagctgatg aggtattttg gggatcattt aagtcctata
     4501 tatttttctt cctcatcagc agtggtagag ggatagaaat gtttatatcc caactttcct
     4561 caatcctggt gatatggatg tgctgatatt cgacatagtc cctacaaagt gaaaactgag
     4621 ttgttgctga cttccttgaa agaaaatgga aaaaagcctt gctctccacc tagttgtgcc
     4681 ctacaccgct ctggccaatt ccatttcctg tccctctgtg gttctgattg gagaccccag
     4741 tgtggaggga ggtcttaacc actgatagga atgataccaa tcgctaatga aatgtacatt
     4801 agttcaagta aggaaataat cttcctttac taaatttcct taagtcagaa caaacagaaa
     4861 ggagaatagt gtttagatta atccagattt gctttctatg aaaatctaat gtctggattt
     4921 tttttttcct tttctcatgg cctaaggaat aatttgaatg taattctgtg aatgtgtgtg
     4981 gaaaatttaa accagggatt tagccttaat aaaggtaacc tttctgacag ctattgttaa
     5041 ttttcctttg tactcttatc ctgcctgtat ctatctgcac tctgttgttt tgagatgtaa
     5101 cactgcacat tgtaatgtaa aaataaaaag taaaattata tttcaaattt aaaaagtca
//
LOCUS       XM_032620876            1637 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase H+ transporting V1 subunit D
            (ATP6V1D), transcript variant X1, mRNA.
ACCESSION   XM_032620876
VERSION     XM_032620876.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1637
                     /gene="ATP6V1D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 7 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748055"
     CDS             134..877
                     /gene="ATP6V1D"
                     /codon_start=1
                     /product="V-type proton ATPase subunit D isoform X1"
                     /protein_id="XP_032476767.1"
                     /db_xref="GeneID:116748055"
                     /translation="MSAKDRIEIFPSRMAQTIMRARLKGAQTGRNLLKKKSDALTLRF
                     RQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVA
                     GVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDE
                     AIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEK
                     DLEQRKAAGEVMEPANLLAEEKDEDLLFE"
     misc_feature    176..754
                     /gene="ATP6V1D"
                     /note="ATP synthase subunit D; Region: ATP-synt_D;
                     pfam01813"
                     /db_xref="CDD:460343"
ORIGIN      
        1 gctgcctctt agcaacgccg gggtgggtca cgggacacaa ccagctgact caggtagagc
       61 aagaatcagt gcgtgggctt gttgcagcca cgattgcccg gccagggacc cgggctgagt
      121 agacatcgtc agaatgtcgg ccaaagaccg aattgaaatc tttccctcga gaatggcaca
      181 gaccatcatg agggctcggt taaaaggagc acagacaggt cgaaacctcc taaagaaaaa
      241 atctgacgcc ttaactcttc gatttcgaca gatccttaag aagataatag agactaaaat
      301 gttgatgggt gaagtgatga gagaagctgc cttttcactt gctgaggcca agttcacagc
      361 aggggacttc agcaccacag taatccaaaa tgtaaataaa gcccaagtga agattagagc
      421 aaagaaagat aatgtagcag gcgttacttt gccagtattt gaacattacc atgaaggaac
      481 tgacagttat gaactgactg gtttagccag aggaggtgaa cagttggcta aactgaagag
      541 gaattatgcc aaagcagtgg aactactggt ggaactagct tcgctgcaga cttcctttgt
      601 tactttggat gaagctatta agataaccaa caggcgtgta aatgccattg aacatgtcat
      661 cattccccgg attgaacgta cccttgctta tatcatcaca gagctggatg agagagagag
      721 agaagagttc tataggttaa agaaaataca ggagaagaaa aagattctca aggaaaagtc
      781 tgagaaggac ttggaacaac ggaaggcagc tggagaggtg atggaacctg ctaatcttct
      841 ggctgaagag aaggatgagg atcttctctt tgaataatgt ttcctgctct gattccttca
      901 aaaggcctaa catggcatca ttttaattca cggtgtgtag gtttggtatg tgtggctatt
      961 taatttttgg cctaagaatt tcaccagttg taaaattccc tgttgtctat ttatgggatt
     1021 acctttgcag aatcataatt cagcaaccgt ttatcaccaa tgagatttgg agaacctgcc
     1081 cagaaactta cagaatttat tctgcgaagt gtcaccctac tccacttaca tgtctgttgc
     1141 aagtgacctg cttaccaaca tattaagaaa ttccccttag gaaacagcag tggtctcagg
     1201 ccaacacacg taagccagct actgctggaa caccctttgt tcctacctac ttgcacaccg
     1261 ttgtctgaga ttgctgcagc catccttgtg ttagttactg tgggacttct ctcctcaaac
     1321 attatgaaaa ccttcactta ttcttccttg aatatcaggt ctgtcttgtc tgtcatggga
     1381 acagttctgc cagttcaaat gtgactatgg taatatacag taaaatgatt ttaaaatgag
     1441 ttgttccttt tttaatgaat ttactgctaa gttgtgttct tatgctcaga tcaccacatg
     1501 ggattagcat ccaaaaagag ctttctctgc agacatgtat gaagtgggta gcttcccttt
     1561 cccccccttc ataaacttac tgaggtgagt gagtgagtgt tgaattttgg gatactaata
     1621 aatatgattg ccaatga
//
LOCUS       XM_032620886            1625 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ATPase H+ transporting V1 subunit D
            (ATP6V1D), transcript variant X2, mRNA.
ACCESSION   XM_032620886
VERSION     XM_032620886.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1625
                     /gene="ATP6V1D"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 5 long SRA reads, 1
                     Protein, and 94% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:116748055"
     CDS             176..865
                     /gene="ATP6V1D"
                     /codon_start=1
                     /product="V-type proton ATPase subunit D isoform X2"
                     /protein_id="XP_032476777.1"
                     /db_xref="GeneID:116748055"
                     /translation="MRARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVM
                     REAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
                     LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIP
                     RIERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRKAAGEVMEPANLL
                     AEEKDEDLLFE"
     misc_feature    176..742
                     /gene="ATP6V1D"
                     /note="ATP synthase subunit D; Region: ATP-synt_D;
                     pfam01813"
                     /db_xref="CDD:460343"
ORIGIN      
        1 acctcgcagc acgcaagcgc caacaggatg gaggcccctc ttcgtcactg accatagagt
       61 ccaggtcctc cgagaacaaa gaagaatgtg gaccttagga ggacctgaaa agtacgtttt
      121 ctcgccgtct ttagctttcg ctaagtaacc ttcaaggcgc agggcacaga ccatcatgag
      181 ggctcggtta aaaggagcac agacaggtcg aaacctccta aagaaaaaat ctgacgcctt
      241 aactcttcga tttcgacaga tccttaagaa gataatagag actaaaatgt tgatgggtga
      301 agtgatgaga gaagctgcct tttcacttgc tgaggccaag ttcacagcag gggacttcag
      361 caccacagta atccaaaatg taaataaagc ccaagtgaag attagagcaa agaaagataa
      421 tgtagcaggc gttactttgc cagtatttga acattaccat gaaggaactg acagttatga
      481 actgactggt ttagccagag gaggtgaaca gttggctaaa ctgaagagga attatgccaa
      541 agcagtggaa ctactggtgg aactagcttc gctgcagact tcctttgtta ctttggatga
      601 agctattaag ataaccaaca ggcgtgtaaa tgccattgaa catgtcatca ttccccggat
      661 tgaacgtacc cttgcttata tcatcacaga gctggatgag agagagagag aagagttcta
      721 taggttaaag aaaatacagg agaagaaaaa gattctcaag gaaaagtctg agaaggactt
      781 ggaacaacgg aaggcagctg gagaggtgat ggaacctgct aatcttctgg ctgaagagaa
      841 ggatgaggat cttctctttg aataatgttt cctgctctga ttccttcaaa aggcctaaca
      901 tggcatcatt ttaattcacg gtgtgtaggt ttggtatgtg tggctattta atttttggcc
      961 taagaatttc accagttgta aaattccctg ttgtctattt atgggattac ctttgcagaa
     1021 tcataattca gcaaccgttt atcaccaatg agatttggag aacctgccca gaaacttaca
     1081 gaatttattc tgcgaagtgt caccctactc cacttacatg tctgttgcaa gtgacctgct
     1141 taccaacata ttaagaaatt ccccttagga aacagcagtg gtctcaggcc aacacacgta
     1201 agccagctac tgctggaaca ccctttgttc ctacctactt gcacaccgtt gtctgagatt
     1261 gctgcagcca tccttgtgtt agttactgtg ggacttctct cctcaaacat tatgaaaacc
     1321 ttcacttatt cttccttgaa tatcaggtct gtcttgtctg tcatgggaac agttctgcca
     1381 gttcaaatgt gactatggta atatacagta aaatgatttt aaaatgagtt gttccttttt
     1441 taatgaattt actgctaagt tgtgttctta tgctcagatc accacatggg attagcatcc
     1501 aaaaagagct ttctctgcag acatgtatga agtgggtagc ttccctttcc cccccttcat
     1561 aaacttactg aggtgagtga gtgagtgttg aattttggga tactaataaa tatgattgcc
     1621 aatga
//
LOCUS       XM_032620897            2733 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus pleckstrin 2 (PLEK2), mRNA.
ACCESSION   XM_032620897
VERSION     XM_032620897.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2733
                     /gene="PLEK2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 10 long SRA reads, 6
                     Proteins, and 87% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748064"
     CDS             437..1498
                     /gene="PLEK2"
                     /codon_start=1
                     /product="pleckstrin-2"
                     /protein_id="XP_032476788.1"
                     /db_xref="GeneID:116748064"
                     /translation="MEDGVLKEGFLVKRGHIVHNWKVRWFILRQNTLLYYKLEGGRKV
                     IPPKGRILLDGCTITCPCLEYENRPLLIKLKTQTSTEYFLEACSREERDAWAFEITGA
                     IHAGQPGKVQQLHILKNSFKLPPHISLHHIVDKMHDSSSGIRPSPNMEQGSTYKKTFI
                     GSSLVDWLISNNFAASRLEAMTLASMLMEENFLRPVGTRSTGAIRSGDLAEQFLDDSM
                     ALYTFAESPKRKMSSKEEISLSAVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPA
                     FLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYI
                     QASSKAERSEWIEAIKKLT"
     misc_feature    443..775
                     /gene="PLEK2"
                     /note="Pleckstrin 2 Pleckstrin homology (PH) domain,
                     repeat 1; Region: PH1_Pleckstrin_2; cd13301"
                     /db_xref="CDD:270113"
     misc_feature    818..1144
                     /gene="PLEK2"
                     /note="DEP (Dishevelled, Egl-10, and Pleckstrin) domain
                     found in pleckstrin 2-like proteins. Pleckstrin 2 is found
                     in a wide variety of cell types, which suggest a more
                     general role in signaling than pleckstrin 1.
                     Pleckstrin-like proteins contain a central...; Region:
                     DEP_PLEK2; cd04444"
                     /db_xref="CDD:239891"
     misc_feature    1160..1495
                     /gene="PLEK2"
                     /note="Pleckstrin 2 Pleckstrin homology (PH) domain,
                     repeat 2; Region: PH2_Pleckstrin_2; cd13302"
                     /db_xref="CDD:270114"
     misc_feature    order(1199..1201,1205..1216,1274..1276,1307..1309,
                     1430..1432)
                     /gene="PLEK2"
                     /note="phosphoinositide binding site [chemical binding];
                     other site"
                     /db_xref="CDD:270114"
     misc_feature    order(1259..1261,1265..1267,1271..1273,1304..1306,
                     1313..1315,1319..1321,1325..1330,1415..1417)
                     /gene="PLEK2"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:270114"
ORIGIN      
        1 tcctttcggt tcagcttaat tccgttaagt attggtcaac agcaatatac taagtgccag
       61 gcaagtacct ggttaaggct gggagtggag gaagatgggc aaagacggga agagtcagag
      121 gcgcagagcg cgctggggga acctggatgg agagagcctg ggcggggaag gctccgggag
      181 gcgacacggg ggcggccctc ccctgagaac taaccacgga ctttagggca ccttcggcgg
      241 ggagaccacg tcagaaatcc cgtccgggat tgacttcctg cccgggaggc cccgcggcct
      301 cgggctctgg gcgcgggcca gcggggcggc gccggcgccg gaccggaggc gcttcctggg
      361 cgcagcgcgc gccgagctgc gcgcggagga gcgggagcgc gggacggcgc accggggagg
      421 gcgcgctggc ggcgacatgg aggacggcgt gctcaaggag ggcttcctcg tcaagagggg
      481 tcacattgtc cacaactgga aggtgcgatg gttcatcctt cggcagaaca cgttgctgta
      541 ctacaagctc gaggggggtc ggaaagtgat cccccccaaa ggccgcatcc ttctggatgg
      601 ctgcaccatc acctgcccct gcctggagta tgaaaaccga ccactcctca ttaagctgaa
      661 gactcaaaca tccacggagt acttcctgga ggcctgttct cgagaggaga gggacgcctg
      721 ggcctttgag ataacaggag ctattcacgc ggggcagccg gggaaggtcc aacagctcca
      781 catattgaag aactctttca agctgccccc tcacatcagc ctgcatcaca tcgtggacaa
      841 gatgcacgac agcagcagtg gaatccggcc aagccccaac atggagcagg gaagcaccta
      901 caaaaagacc ttcataggct cctccctggt ggactggctc atctccaaca actttgcagc
      961 cagccgtctg gaggccatga ccctggcctc catgctcatg gaggagaact tcctgaggcc
     1021 ggtaggcacc cgaagcacgg gagccattcg ctctggggat ctggctgagc agttcctgga
     1081 tgactccatg gccctgtaca cttttgctga gagccccaag aggaagatga gctccaagga
     1141 agaaatcagt ctcagcgccg tggagttaag tggcacagtg gtaaagcaag gctatctggc
     1201 caagcagggg cacaagagga aaaactggaa ggtgcggcgc tttgttctga ggaaggaccc
     1261 ggcttttctg cattactacg acccttccaa agaagagaac cggccagtgg gtgggttttc
     1321 tcttcgtggt tcacttgtat ctgctctgga ggataatggc gttcccactg gggttaaagg
     1381 gaatgtccag ggaaatctct tcaaagtgat tactaaggat gacacacact attatatcca
     1441 ggccagcagc aaggctgagc gttcagagtg gattgaagct atcaaaaagc taacgtgaca
     1501 aggatctgag ggaatgggat caggattcct ccctcttaac agatgacagg atttcctgga
     1561 aaaagggaat gtgttaagac ttttagcttt ttctattttg tactggagta agattggtga
     1621 agagttcctt agattacagt gggcagtggt gctatttcct tccccacctt caaagttaac
     1681 atggaaatgc tagaatagcc attaggcatc agcatcttga ctttcgctca tcatcacaac
     1741 cagccattcc ttgggtacca aagtaggttt cccttgtcac actaactggc cacgttgtaa
     1801 tactaaataa aacattatag tctcatggtg gcgctctctg aaatgctgtc agcaactcat
     1861 tctttggaat gaataaaaat tgttatttgt tcctggctat tagaattcct ataccaagtt
     1921 ttagttttca aaggtttttc atgcttaagg ctatacgaat tattaggcaa gctgattata
     1981 aaaacatctc aagtgatctg tcactaaaac atgcctcatc ttaaagtggg gatggggggc
     2041 aaaattttga aaatatcgtt ttgctttgaa aaataagctt tcgttaagta ttatacgttg
     2101 cagaaaagaa atcatggact cagacagatt agtcacacat acaaagtaaa attacagttt
     2161 ttctgtggaa aaaaatgtca tttagataga gcaggagttt gttgaaggac aggaacagct
     2221 ctctaaagga cacagaaaga tgtcaatggg aaaagaatta aatcaaggca tgaaattttg
     2281 ggttttagaa tgaagattaa tggagacaaa taggtaccaa gaagcttcac cagttaggag
     2341 gttaatctga agtagtgaaa agtctgcatc atacagtatc tttaaaaaca tttttattac
     2401 tttcaagttt aatacagtaa tctgccaagt acaagtgctt cggcttcctt taatgaatag
     2461 atacgtaact tacatttaag gggagtggat acttccaaag tgcttaagta aaaattcatt
     2521 ctcttcaata gtttgaactg tctcctctta atcttgtcta gaataactga tctgaggttt
     2581 tactttattc cttacattct aagagactgc cttttaaagc accattttcc atttggcatt
     2641 tcaccaaggt ctatgtcctt ggaattagtt tctttattgc ttcttgttat caacaggtgt
     2701 ttacctgaat taaactgcat ttggtttgat ggc
//
LOCUS       XM_032620909            2988 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus eukaryotic translation initiation factor
            2 subunit alpha (EIF2S1), transcript variant X1, mRNA.
ACCESSION   XM_032620909
VERSION     XM_032620909.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..2988
                     /gene="EIF2S1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748072"
     CDS             142..1089
                     /gene="EIF2S1"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 2
                     subunit 1"
                     /protein_id="XP_032476800.1"
                     /db_xref="GeneID:116748072"
                     /translation="MPGLSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEG
                     MILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKF
                     TKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP
                     SILDGLDLNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNC
                     STETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPK
                     VVTDTDETELARQLERLERENAEVDGDDDAEEMEAKAED"
     misc_feature    151..1086
                     /gene="EIF2S1"
                     /note="eukaryotic translation initiation factor 2 subunit
                     1; Provisional; Region: PTZ00248"
                     /db_xref="CDD:240329"
ORIGIN      
        1 cgcatgcgcg gtggggtcga gcgaagcgca cgctgaggag agtcggcggc tgctacgggt
       61 ggatcaagtc tggtctctcc gattgaagag cgtggcgccg gacaccagtg cgggattcac
      121 acacatacct cagattgcag aatgcccggt ctaagttgta gattttatca gcacaaattt
      181 cctgaggtgg atgacgtagt gatggtgaat gtaaggtcca ttgctgaaat gggagcttat
      241 gtcagcttgc tggagtacaa caacatcgaa ggcatgattc ttctgagtga gttgtccaga
      301 aggcgtatcc gttctataaa caaactcatc cgaattggaa ggaatgaatg tgtggttgtt
      361 atcagagtgg acaaagaaaa aggatatatt gatttgtcaa aaagaagagt ttctccagag
      421 gaagcaatca aatgtgaaga taaatttacc aaatccaaaa ctgtttacag cattcttcgt
      481 catgttgctg aggtcttaga atataccaag gacgagcagc tggaaagcct gttccagagg
      541 accgcttggg tctttgatga caagtacaag agacccggat acggtgccta tgatgcattt
      601 aagcacgcag tctcagaccc atctattttg gatggcttag atttgaatga agatgaacgg
      661 gaagtactca ttaacaatat taataggcgt ttgactccac aggctgtcaa aattcgagca
      721 gatattgaag tggcttgtta tggttatgaa ggcatcgatg ctgtaaaaga agccctgaga
      781 gcaggtttga attgttctac agaaaccatg cccatcaaga ttaatctaat agctcctcct
      841 cggtatgtaa tgactacaac caccctggag agaacagaag gcctctctgt cctcaaccaa
      901 gctatggctg ttataaaaga aaagattgag gaaaagaggg gcgtcttcaa tgttcaaatg
      961 gagcccaaag tggtcacaga tacagatgag actgaacttg caaggcagct ggagaggctt
     1021 gagagagaaa atgccgaagt ggatggagat gacgatgcgg aagaaatgga agccaaagcc
     1081 gaagattaac tttgtgggca acagagtcca gtttaaggaa cacaaagcag ccttcctggc
     1141 tgttaaccct agacttgaaa gttttccagt attgaaaact tcaaagctga atatttttta
     1201 tttcgaagta tttaaatgtt ccaacagacc aaaacgtgaa atgccctcct aaatgtcagc
     1261 tgttttcaca cagtagctct gacaccttga gcatttttta agggagtggc ctgatttcac
     1321 tagagacaaa tctttaagaa cagtcataaa atggggcgtg tgatttccat ttctgatgtc
     1381 tccagattgg cacccctttg tagttcagtg cctccatgag atttaccagg ggcacccaaa
     1441 gcaaatagtc ctaacctttc tatataaaat gtatcaagca aacattaaat aaatttctgg
     1501 gatatttaac cataggtttc ttccttattg tcaccagtta aaagcattat gattactaag
     1561 accctaattc tgttatcttc attttatttg aaatgtagta atataaaggc aggtgaccta
     1621 aaggatcaat atagcagatc ctttcaaagg gagggtttag agaacataat tttaattagt
     1681 gaaagtttac tcctaggggg aaaaagcctt aaaatgcaac taaagaatta cattggttgt
     1741 gtgcctttta cctatttgag actgatgaca tgtggtatga gggagaattt atcacactgg
     1801 tccttgttgg tgtactaagc tgcttgcctt gagtttgtaa ttcagggtgg taaaggtttt
     1861 aggggtgttt tttttgtttt ttaagaaaaa gatgctgctt tttaaattaa gttatttgag
     1921 tctcattgcc caacttttga tttttttttc cagtaaaata tttgctaggt gccacctaga
     1981 agcttcagtt ctcttcataa tagagtgggg atctgtttga acacaattac aatggttttt
     2041 ctgtgtttcc atcatttttt tctttaagag ctgattgttc taaaggtaaa taaataatat
     2101 atacaaaggt aaataaattt catagataac gtatggtttg cagttacagc tacagtagcc
     2161 agggtgtaga aagtcttaag ttaactttgg tctgcttcat aaatttaatc tcttagggta
     2221 cttgaggtac tatataaatt aattttacta atcattccca agaaatactt agaagattaa
     2281 acctaaccca ccttagtcaa tccaggacta gacttacctc agtgttaaag ggaatggaaa
     2341 atagaagagt gtgttggtga gccatttgag ccatttttga aggtttgtcc ctttgtttaa
     2401 tttagcagcc tctactagct ctttaaatcc agaagtctaa tttcatataa ccgtttccac
     2461 gagggagcca tgattgctgg cttgcatact gggaatattt agaggagaat ctggcacata
     2521 attttcactt cagtctttct gaggagtcaa agaaaagtct ataaagctca cagcatcaag
     2581 aatgttatca aactgtaaca ggtgctcctt aaatgtttgc tgtaagcaga ggaattgaat
     2641 tttcactttg tttactgaat ttttttttaa tacttcaaaa gccataactg tcgagaaata
     2701 ccggtggcat cagtggtgag tgattttatc ccatgcaggt cttttgctca gttatgcaac
     2761 aattttgcaa atttatgacc cttatgagaa aaaagatcaa tacctcactg atcatgaagg
     2821 agagaactaa ctcaactcac cctggtgacc taaaagtatc actttcaaat atgagaacac
     2881 atcacaccca gctccaaata acttgaacag attgacaaag acaattgacc agtttatcca
     2941 aatggatctc tccccacaaa gactcttcat taaaaattga caatttca
//
LOCUS       XM_032620916            6961 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus eukaryotic translation initiation factor
            2 subunit alpha (EIF2S1), transcript variant X2, mRNA.
ACCESSION   XM_032620916
VERSION     XM_032620916.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6961
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6961
                     /gene="EIF2S1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 11 long SRA reads, 11
                     Proteins, and 81% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748072"
     CDS             4115..5062
                     /gene="EIF2S1"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 2
                     subunit 1"
                     /protein_id="XP_032476807.1"
                     /db_xref="GeneID:116748072"
                     /translation="MPGLSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEG
                     MILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKF
                     TKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP
                     SILDGLDLNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNC
                     STETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPK
                     VVTDTDETELARQLERLERENAEVDGDDDAEEMEAKAED"
     misc_feature    4124..5059
                     /gene="EIF2S1"
                     /note="eukaryotic translation initiation factor 2 subunit
                     1; Provisional; Region: PTZ00248"
                     /db_xref="CDD:240329"
ORIGIN      
        1 tggggtcgag cgaagcgcac gctgaggaga gtcggcggct gctacgggtg gatcaagtct
       61 ggtctctccg attgaagagc gtggcgccgg acaccagtgc gggattcaca cacatacctc
      121 aggtgactag tcgccccgat cggtttctcc aggaattcac tttggttgtg tccagtgaca
      181 tgggtggtcg atagagggta ggccccgggc taacaccccc tccttctccc gtccctgcgc
      241 gggaagtgtc tgcacacagc tgccaccgcc cgccggctcc gtgtcggtct ccccgtgtag
      301 cagaggtgtc atggtgcgaa cggaggcctc tcgtgaaggg aggcgggccg agtgactgaa
      361 cagctctttt agtgtgcttc aagtggggac gccgtgaggt ggggcggcct tgggagaatg
      421 ccgtgacgcc cccgccccgg gacgcggaac actttgccct ctccgggcct gagagttcca
      481 tccttttttt ggttttgttt ttcttccgcc ccagcaaata ctctcaattg taaccagacc
      541 tggcacttca aggaacccgt tgattgggcc acgatattga caagagttgg gttaaaaaaa
      601 agatccaagt ttgttcctct gataagtgat attaaaaaaa tcgaagctgc tttcgccctg
      661 tgttgctggc gtggtgcgtt tctggagaga gagtcgctcc ttaagatggc actaaaagat
      721 cctactgaag agtttattac tcttcgtatc ggtttgccgt gtttcagcac cgatgagaat
      781 agacttgtag aaatacgcgc tgtgatctta cggttaagca gaactaaaac acataagata
      841 cgggaatttt aggtcctttt tgtcagcgcc ccaaacttag gctactttaa cgttcattaa
      901 caagaaacat tgtttcttgg ggaaaaggtg tagcaaagaa gttttgtttt ttctaccgat
      961 ttaagctgtt atccacgggg aaaaaacctc gtaactctgt gtctttcaac agtttggaat
     1021 tattcacata gagctttact gcctcttctc agttcattgt atgccaaatg acagcgattc
     1081 tcaaaacatc tcaaaaagat gcacagtaat gtttttagag atgggtgctt cctatttcaa
     1141 cgacagtgaa ctagtttaaa agctttattt gtgtagcact tatgtagtca aaacgagcat
     1201 tcagaacata actgtcgggg gcccgaatca gaatgatcac gggagttgcc tctatcacat
     1261 catactttac tttggaaaag aatgtggact tctgtatcca ttatggcgac ttgaccatgc
     1321 agtggtttaa gaagtcctgc ctactgtttg accaggcaaa attactgaca ttgcagggta
     1381 tttgaaatta tcttggaatt cagttcatgt attttgaaag atgggtgttc tttactggag
     1441 aacacataca gtattgtagt aatctgacat attgaggctt tgtgggttaa actctggagt
     1501 caatgtcaga tgacctggat ttagctcctg ttgtacttag taagcatttg tctttgagga
     1561 agacatttaa tactttattt taataataaa ataattgttt aatgaattaa gttacaaaat
     1621 ggaaatgata cctcctttgc cttttaatag cttttatttg tatagcacat tacactttcc
     1681 aaattttatc acatgtatat tatttcattt gatacccacc acaaaacgat gaagtacatg
     1741 gcacacacta gaaactacag ttaatgggaa tgcatttctc aagcagccac agctagtaag
     1801 taggagagtg aagtctggaa cccatgtcta gaactattcc caaagtcagg ctatgctact
     1861 tgcctgactt gaggacccta ttaagggtga aataaaataa gtcgaagtgc tttaaaaatt
     1921 atgtaaaagg gctgatagat acttgatgtg tgactcctat tttcctgact gatttttttc
     1981 aaagttactg ttattagcat aatatttcca taaataagga gataggttca aaatctgtta
     2041 accattatgc aggttctttt gcaaagtaga ttttttttat actctattac ttgtctttta
     2101 ctgggaatga cataccatta gcagtattcc tttatttaca ctgtctgttg caaagagact
     2161 tgtacctcct gaagcattag catccatatc tcccttcagg attcttttac acgattgcct
     2221 atgttctttt acaattaaat taagtcttgc ttctccaaaa ttattggctt tactatttga
     2281 agaaacttgg tgagtaaaag tggttagcac cagttaaatc tcttaaaact gtttcataca
     2341 tttccataac gtttattttt atatccagtt tgaaactttt tcagctctca aattttagta
     2401 ccttacatgc agatatttga caacagttgt ccaagaaaaa aaaaagccct gtttaaaaat
     2461 gaaacaacca gctcagctgt ttcttggtgg gtaattgaat gtctgcttcc ctttatttgc
     2521 taaatccctg ttttgtcagg cttcaaagag aaatatatct ctgccactat tattaatatg
     2581 cagctttatt ttttgttata cgggataggt taatactaga agtttgcact aatttatagt
     2641 ttatgttcca gcactgaata tgtacattga tagtgctttt tgtttaagat gttttactga
     2701 ttgtcatgta tttatcagtg atattgagag aaaatatagc ctgttgtata agacacaaac
     2761 tatggattca aacttcatag gttcagattt tgactgtcac ttgttaaaag tatatgacaa
     2821 aacaagatgc ttaacccatg cttcatgttt ttcatctatg aaatggggaa gactaggagg
     2881 aaagtgatac ctcagggaga taggcagagg ccagataata caggaccctg taggtagtgg
     2941 aaaaatgtat aaatcagtgg gtaagccact aggaagaaac atgtgggtgc aggtagcaag
     3001 ttctcaaact gctctgaagc agaactctgg tgttctgtga gctggatgta ggtgttctgt
     3061 ctttaagata agtaatgaca gtcttatttc ccaattaata agaaaaaaaa ataagttagg
     3121 tgaagtttca caaatttttc ataggacctt aggtcttatt attgcctgtc ttctgagctt
     3181 tgacaatagt aaattagtta aggttagcag aaaaacatga aaattatcaa ctatgattaa
     3241 tttgagagct tccttttaaa aatgtgtttc tacatatggt atgattttag gcctgtgggt
     3301 cataatagga gtggtgttga aaataggttg ggtggatcaa agggagtaat tttaagtata
     3361 tttaatgtgt ggaggttaag agaaacttga actttatagt agtgggaatc tataaagctg
     3421 ttctcgagct tgggtataac tattcaacaa aagagaagaa tatttgggag taatgggaaa
     3481 agtggaagct aaaaattatg gtagttgtga attaaattca agtttgtttt aagaggaaaa
     3541 aaattcagat tagtgtcttt tgtgattaat aaattttttg tttttgtctt gacgtgatac
     3601 tataattttg gctataataa ataatggagt atatcatttg atatatggtt agggttagga
     3661 tttaatttgt tggaagagtc ttcccttcat atagcaggcg gtaacatatc cagtcttagc
     3721 tgacttggag gaagagtagc tttagttttt ctgacaggtt tataatagta gtgatgcttc
     3781 ctatcatttg ttatttctta aagtattaaa ataatatttt actcttaagg tataccttta
     3841 atccttcagt gtaaggactt tgtaaatggt cattattttt tatgattcct ctgaaactga
     3901 tggtagagaa tcacgcaagc cttacaaaaa tgtggagcaa aataaaaatt aaagcttggt
     3961 tccagaacat tcctctgttt tctggtacca tttaagaagt ttaaagaggg gagaaaaccg
     4021 ataacttctt ccagtggcaa gatgtggaaa attgacattt aaaaattttg accttaactg
     4081 aacacttact tgattgtttt gttcagattg cagaatgccc ggtctaagtt gtagatttta
     4141 tcagcacaaa tttcctgagg tggatgacgt agtgatggtg aatgtaaggt ccattgctga
     4201 aatgggagct tatgtcagct tgctggagta caacaacatc gaaggcatga ttcttctgag
     4261 tgagttgtcc agaaggcgta tccgttctat aaacaaactc atccgaattg gaaggaatga
     4321 atgtgtggtt gttatcagag tggacaaaga aaaaggatat attgatttgt caaaaagaag
     4381 agtttctcca gaggaagcaa tcaaatgtga agataaattt accaaatcca aaactgttta
     4441 cagcattctt cgtcatgttg ctgaggtctt agaatatacc aaggacgagc agctggaaag
     4501 cctgttccag aggaccgctt gggtctttga tgacaagtac aagagacccg gatacggtgc
     4561 ctatgatgca tttaagcacg cagtctcaga cccatctatt ttggatggct tagatttgaa
     4621 tgaagatgaa cgggaagtac tcattaacaa tattaatagg cgtttgactc cacaggctgt
     4681 caaaattcga gcagatattg aagtggcttg ttatggttat gaaggcatcg atgctgtaaa
     4741 agaagccctg agagcaggtt tgaattgttc tacagaaacc atgcccatca agattaatct
     4801 aatagctcct cctcggtatg taatgactac aaccaccctg gagagaacag aaggcctctc
     4861 tgtcctcaac caagctatgg ctgttataaa agaaaagatt gaggaaaaga ggggcgtctt
     4921 caatgttcaa atggagccca aagtggtcac agatacagat gagactgaac ttgcaaggca
     4981 gctggagagg cttgagagag aaaatgccga agtggatgga gatgacgatg cggaagaaat
     5041 ggaagccaaa gccgaagatt aactttgtgg gcaacagagt ccagtttaag gaacacaaag
     5101 cagccttcct ggctgttaac cctagacttg aaagttttcc agtattgaaa acttcaaagc
     5161 tgaatatttt ttatttcgaa gtatttaaat gttccaacag accaaaacgt gaaatgccct
     5221 cctaaatgtc agctgttttc acacagtagc tctgacacct tgagcatttt ttaagggagt
     5281 ggcctgattt cactagagac aaatctttaa gaacagtcat aaaatggggc gtgtgatttc
     5341 catttctgat gtctccagat tggcacccct ttgtagttca gtgcctccat gagatttacc
     5401 aggggcaccc aaagcaaata gtcctaacct ttctatataa aatgtatcaa gcaaacatta
     5461 aataaatttc tgggatattt aaccataggt ttcttcctta ttgtcaccag ttaaaagcat
     5521 tatgattact aagaccctaa ttctgttatc ttcattttat ttgaaatgta gtaatataaa
     5581 ggcaggtgac ctaaaggatc aatatagcag atcctttcaa agggagggtt tagagaacat
     5641 aattttaatt agtgaaagtt tactcctagg gggaaaaagc cttaaaatgc aactaaagaa
     5701 ttacattggt tgtgtgcctt ttacctattt gagactgatg acatgtggta tgagggagaa
     5761 tttatcacac tggtccttgt tggtgtacta agctgcttgc cttgagtttg taattcaggg
     5821 tggtaaaggt tttaggggtg ttttttttgt tttttaagaa aaagatgctg ctttttaaat
     5881 taagttattt gagtctcatt gcccaacttt tgattttttt ttccagtaaa atatttgcta
     5941 ggtgccacct agaagcttca gttctcttca taatagagtg gggatctgtt tgaacacaat
     6001 tacaatggtt tttctgtgtt tccatcattt ttttctttaa gagctgattg ttctaaaggt
     6061 aaataaataa tatatacaaa ggtaaataaa tttcatagat aacgtatggt ttgcagttac
     6121 agctacagta gccagggtgt agaaagtctt aagttaactt tggtctgctt cataaattta
     6181 atctcttagg gtacttgagg tactatataa attaatttta ctaatcattc ccaagaaata
     6241 cttagaagat taaacctaac ccaccttagt caatccagga ctagacttac ctcagtgtta
     6301 aagggaatgg aaaatagaag agtgtgttgg tgagccattt gagccatttt tgaaggtttg
     6361 tccctttgtt taatttagca gcctctacta gctctttaaa tccagaagtc taatttcata
     6421 taaccgtttc cacgagggag ccatgattgc tggcttgcat actgggaata tttagaggag
     6481 aatctggcac ataattttca cttcagtctt tctgaggagt caaagaaaag tctataaagc
     6541 tcacagcatc aagaatgtta tcaaactgta acaggtgctc cttaaatgtt tgctgtaagc
     6601 agaggaattg aattttcact ttgtttactg aatttttttt taatacttca aaagccataa
     6661 ctgtcgagaa ataccggtgg catcagtggt gagtgatttt atcccatgca ggtcttttgc
     6721 tcagttatgc aacaattttg caaatttatg acccttatga gaaaaaagat caatacctca
     6781 ctgatcatga aggagagaac taactcaact caccctggtg acctaaaagt atcactttca
     6841 aatatgagaa cacatcacac ccagctccaa ataacttgaa cagattgaca aagacaattg
     6901 accagtttat ccaaatggat ctctccccac aaagactctt cattaaaaat tgacaatttc
     6961 a
//
LOCUS       XM_032620929            7610 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 12 member 6
            (SLC12A6), transcript variant X1, mRNA.
ACCESSION   XM_032620929
VERSION     XM_032620929.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7610
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7610
                     /gene="SLC12A6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 34 long SRA reads, 48
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748083"
     CDS             1188..4640
                     /gene="SLC12A6"
                     /codon_start=1
                     /product="solute carrier family 12 member 6 isoform X1"
                     /protein_id="XP_032476820.1"
                     /db_xref="GeneID:116748083"
                     /translation="MHPSENTTKMASVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVR
                     FSSRESVPETSRSEPISEMSGATSSLATVALDPASDRTSNHQDVTEDPSQNSITGEHS
                     QLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLSRLANYTNLT
                     QGAKEHEEAENITEGKKKPTKTPQMGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGVL
                     QAFAIVLICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGT
                     TFAAAMYILGAIEIFLVYIVPQAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVF
                     IGVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDICSK
                     TKEINNMTVPSKLWGFFCNSSQFFNATCDEYFVHNNVTSIQGIPGLASGVITENLWSN
                     YIPKGEIIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGD
                     LKDAQKSIPIGTILAILTTSFVYLSNVVLFGACVEGVVLRDKFGDAVKGNLVVGTLSW
                     PSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALL
                     LTAVIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWA
                     LSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARF
                     ALLRLEEGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVG
                     NFLENYGEALAAEQTIKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCGLGGMKHNTV
                     VMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVW
                     WIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAE
                     VEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSI
                     GSDEDEETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAV
                     KLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVI
                     TIYS"
     misc_feature    1512..4637
                     /gene="SLC12A6"
                     /note="K-Cl cotransporter; Region: 2a30; TIGR00930"
                     /db_xref="CDD:273347"
ORIGIN      
        1 agcggggagg aaagggaggg gctgcggcgc cgccggcaca gcccgccggg cccggggccg
       61 ggggcggcga ggtcacgtaa ctgctgctct ggcatctgac cggggaggag gctccctccc
      121 cggcagcccg agccccccgg cgcccgccgc ggctcggaaa cagttacccg ctggtaaaca
      181 acagctgcgc gcgcatccga atcagctggc gccgggatcc cgcacctgcg acctcctcct
      241 accctcatcc tcgccgctcc ctcctgctca gccagggcca gcctgcgagg ccgtctcctc
      301 ttctgttagg gcccgaagga agaacagcga aggggctgac cttgcgccgg ggccctggta
      361 ggggaggaaa gcgtctccgg caaaggggtg gctcgtcctg tcacacgcag gagaaaccca
      421 gcaaaccgat cgggggctcg atggactagc agctacctgc cacgaccctg aactgcagtc
      481 cgcggagtct cgatccgcta gccgcctcct cccagatccc agggaccttt ctgccagaag
      541 agcgggaggg ccacccccgc agacctctcg gaggcaggaa tccgctttgc ccctgcaacc
      601 tcctctcctc acccttgtct cattctcctc catccatagt gtgcgatatt tttcccgtta
      661 tgcatgctca cctctcccac cagacccaag tggattatcg gcctcaaaaa catcgggtgg
      721 ctctacacac atttcctccc agccagacct gtggggtatt cacctgatac acaacaggtg
      781 gtcgggtgta caccgtttcg caatctgatc tatactgtct atattcgcct gataagggtg
      841 ggcctctgcg cactttgctc atctagtcgt gggacattta cagataaggg actaactacc
      901 tcggcagaaa ccttaaggtc gaggagagaa aggcttcgtc acctgcttct ctgagaccat
      961 ggctgtctgc ccgcatccct ggaccaggcg agatgactaa gatagctctt cattctgaag
     1021 gaacgaagtt acacgagatt gtcatcgttt gtcttttttt tttttcctta aatatttttc
     1081 agctgctggt agtgcacttt ttaggacagg cggcttgaat tctgagtaga aggagtcata
     1141 tatagtggct ttttgtgtgg tgtaaatcaa ggaaaagaaa aagaaaaatg catccttcag
     1201 aaaacaccac caagatggct tcagttcggt tcatggtgac accaacaaag atcgatgaca
     1261 ttccaggttt gtcagacacc agcccggacc tcagttctcg atccagttcc cgggtaagat
     1321 ttagctcccg ggaaagtgta cctgaaacaa gccgtagtga gcctataagt gagatgtctg
     1381 gagccaccag ttcactggcg actgttgcac tggatccagc tagtgaccgg acttctaacc
     1441 accaggatgt tactgaggac ccgagtcaga actccatcac aggggaacac agccagctgt
     1501 tagatgatgg acataagaaa gctcgaaatg cttatcttaa caattccaat tatgaagaag
     1561 gagatgaata ttttgataaa aatttggcac tctttgagga agaaatggac accagaccaa
     1621 aggtgtcttc tctcctcagc cgcttggcca attacactaa cctgacgcaa ggagcaaagg
     1681 aacatgaaga ggcagagaac atcactgaag ggaaaaagaa gcccaccaag accccccaaa
     1741 tgggtacttt catgggtgtt tacctcccat gtctacaaaa tatttttgga gtgatcctgt
     1801 ttctacgcct tacatgggtg gtgggcacag ctggagttct gcaggccttt gcaattgtcc
     1861 ttatctgctg ctgttgtaca atgttgactg ctatctccat gagtgccatt gccactaatg
     1921 gagtggtgcc agctgggggc tcatacttta tgatttcccg agcactgggc ccagagtttg
     1981 gtggggctgt tggcctctgc ttttatcttg gtaccacatt tgcagcagcc atgtatatcc
     2041 ttggtgccat tgaaattttt ctggtatata ttgtccccca agctgccatc tttcatagtg
     2101 acgatgcact caaggagtca gcagccatgc taaataacat gcgtgtctac ggcacagcct
     2161 tcttggtcct catggtattg gtggtattca tcggtgtacg ctatgtgaac aagtttgcct
     2221 cgctctttct ggcctgtgtc attgtgtcca tcttggccat ctatgctgga gccatcaagt
     2281 cttcttttgc ccctccacac ttcccggtct gcatgctggg caaccgcacc ctttcatcaa
     2341 ggcacattga tatttgctcg aagactaagg aaattaacaa catgacagta ccgtcaaagt
     2401 tatggggctt cttctgtaat tcaagtcagt ttttcaatgc cacctgtgat gaatactttg
     2461 ttcacaataa tgtcacttca atccagggca tccctggatt ggctagcggt gtcattacag
     2521 agaatctttg gagtaattat ataccaaagg gagagattat tgaaaagccc tcagccaaat
     2581 cttctgatgt cttaggcagc ttaaaccatg agtatgtcct tgttgacatt accacctctt
     2641 tcactcttct ggtggggatc ttctttccat ctgtcacagg tatcatggct ggatcaaaca
     2701 gatctggaga tctgaaagac gctcaaaagt ctattcccat tggcactatc ctcgccatcc
     2761 tgactacctc ctttgtttat ttaagcaatg ttgtcctttt tggtgcatgt gttgaaggtg
     2821 ttgttctcag agacaagttt ggggatgctg tgaaaggtaa tctcgtggtg ggtaccttat
     2881 cttggccgtc cccgtgggtg attgttattg gctccttctt ctccacgtgt ggggctggac
     2941 ttcagagtct cacaggtgca ccgaggctgc tacaggctat agccaaggat aacatcatac
     3001 cctttctgag ggtgtttggt cacagcaaag ccaatgggga acctacctgg gctttacttc
     3061 taactgctgt cattgcagag ctgggaatcc ttattgcctc cctggatctt gtggccccaa
     3121 ttctttccat gttttttctc atgtgttacc tcttcgtgaa cttggcatgt gccttgcaaa
     3181 cattacttcg aacacccaat tggagacccc ggttccgcta ctaccactgg gccctctctt
     3241 tcatgggaat gagtatctgt ctggctctga tgtttatttc ttcctggtat tatgccatcg
     3301 tagctatggt aatagctggt atgatctaca agtacatcga gtaccaagga gctgagaaag
     3361 aatggggtga tggtatccgc gggctgtccc tcagtgcagc ccgatttgct ttgcttcggc
     3421 tggaagaagg acctccacac actaaaaact ggaggcctca gttgcttgta ctgctgaaac
     3481 tagatgaaga cctacatgtc aagcatcctc gcctcctcac ctttgcttca cagcttaagg
     3541 caggaaaggg tctcactatt gtgggctctg tcatcgtggg gaacttcctg gagaactatg
     3601 gtgaagcttt agctgctgag cagaccataa agcatctaat ggaggcagag aaggtgaaag
     3661 gattctccca gctggtggtg gccgccaagc tgagagaggg catttcccac ctcatccagt
     3721 catgtggcct tgggggcatg aagcacaaca cagtggtgat ggggtggcca aatggctggc
     3781 gccagagtga agatgctcga gcttggaaga catttattgg cacagttcga gtgacaactg
     3841 ctgcccatct ggccctgctg gtggctaaaa acatctcctt ctttcccagc aatgtggagc
     3901 agttttctga gggcaacatt gatgtgtggt ggatcgtgca tgacgggggg atgctcatgc
     3961 tcttaccatt cctactgaaa cagcacaagg tgtggcgaaa atgcagtata cggatcttca
     4021 cagtagccca actagaagac aacagtattc agatgaagaa ggacctggcc accttcctgt
     4081 atcaccttcg cattgaggca gaggtggaag tggtggagat gcatgacagt gacatatcag
     4141 cttatactta cgagcgcacc ctgatgatgg agcaaaggtc ccagatgctc cggcacatgc
     4201 gactatccaa aacagagcgg gacagagagg cacagctggt aaaagatcgg aattcaatgc
     4261 tacgattgac cagcattggc tctgacgagg atgaagagac agagacctat caggagaagg
     4321 tgcacatgac ctggacgaaa gacaagtaca tggcatcccg ggggcaaaag gccaagtcaa
     4381 tggaaggatt ccaggaccta cttaacatgc gtccggacca gtccaatgtg aggcggatgc
     4441 atacagcagt gaagctcaat gaggttatag ttaacaagtc ccatgaagca aagctggttt
     4501 tgttgaatat gccagggcca ccccgaaacc ctgagggtga tgaaaactac atggagttcc
     4561 tagaagtgct cactgaagga ctagagcgag tccttcttgt ccgaggtggt ggcagtgaag
     4621 tgatcaccat ttattcataa tctacccctg aatgactctg ctgggcctca cctttccaga
     4681 aaggtttcca tcctccatgg aagtgccagc tctttactac cactcccatc aactagagac
     4741 ctgcgttctg tgtacatcac gctgaactct taatgagctg agcctcaagt acttgtgcag
     4801 aaaagtacaa acagatctgc tctttgctac cacatgacct gctgtcctta aggaagaagc
     4861 agatattccc tcaacctcag aacaacgctc aagtcctaca agccatgccc gtaccagata
     4921 aaggcaagtt agaattaaca agctaaacca ataaaatgaa ttggcaaaag ggatgctaga
     4981 aattcaactg aagacaaaag acaagtacac atctaacatt acagatgagt ctcagaagtc
     5041 atgattcaat gatgacacca tgggggtaac agccagacac agccacatca tactaaagaa
     5101 ttcatggcca agtacacggg gagctaacat ctttgtggag acatccatgg caagccaaga
     5161 tgaaaatttt cgtcagtgta tccactgctc tccaggactc taattttaca ttagggtacc
     5221 aatatataaa aatggaaaca cgaaactgca gcccctactt cctccaaaat aagattcccc
     5281 caaaatatgt ttaagtacac atactgtgtt gtatatttca gctatttctc aaacccatcc
     5341 tgtggttagg attgtaatac aggcactgtt accatggaaa ctgtttttta aaaggttgag
     5401 taaaaattat ttctttcagg ttctttgcaa atggacaaac taagcgaact ccaaaaggta
     5461 gctatcaaga tttacataca tgcagcctgt ggttacctat gagacatggg caaaatatat
     5521 aagctgttat ttaagaaagg cagatgatga tgcatattga ccaataggtt ctcctttcct
     5581 tctccctttt atgccctctg ggttataggc acagatcaaa aatcataaga acacacacac
     5641 taggaagact ggctaaaatc cttggctaaa acctttggat tatccttcaa agggagaatc
     5701 cagcagtgga attcgaacat tatagccata ctccttccat agtgccaaag ttactgagct
     5761 gctgctactc ttcttaccta cttcactgaa gtggcatgca attggcattg gcctatttca
     5821 agaaacttat ttcattagga aacctgtgga ctcattccca aagccagccg taatgaagac
     5881 ttgagggcat gcagctcagc actaagtatg agcatttttt tttcctttca attttattct
     5941 tcattttgac tgcagaaact tggatctgaa ctaagagatt atccaaggta acagtcttct
     6001 atttcagttt tgttttcaga aagctctaaa tgtgtcaagg aaatgcttct gcaagcttag
     6061 ctttttattt gctaacttaa tgatcacaaa acacctgctt ttcgagcata gggaaactgc
     6121 cctgtgtgac tgagtggtaa tttcatatat gtgaaatctt catttattgt acaggataga
     6181 tagggtattc caagaaacta tcttgcctgt gttcatgtct gcttttgaat ttcattttat
     6241 taatgataaa tagtaccact ctttcattac cagtaggata tggaacaagc tgacttgctc
     6301 catagtctgc agactattca tctgaccctt atggacagag gagaaaaacc cttcaatatg
     6361 gcttaagaaa cggagtcatt ttggtttatt ccctttgttc ttctctcagt gtcccagccc
     6421 agtcaggtag caaggcagac aagatctttt aagtcttttt tttctgctgc ttcctgcaga
     6481 gggtagaagc attgtttaca actttcattg caacactcca ttgctaagtt gagtccagca
     6541 gtagtggaac aggtacccta ggacccaagc tattaaagac ccatgctgta aaggtcagct
     6601 tgcccaggaa ctcctttaca tttacacaaa acctctggcc aaatggacag aaagtaaggt
     6661 tagttttaga agagcttttt gtggctggag ctctgtaaga atcctttaaa gggataatgg
     6721 aattagtggc tactaatata gcccctactt taggccctaa aacacaatca ctgttacatg
     6781 gggaagtggt tattaggcca gatttaaact catctctgtc tagagcattt catgtctatg
     6841 tgttgcttat gttgtctgca aactgtcttg tctcttttaa tcactgcaaa taaagcaata
     6901 ccgaaaactt gatgagagaa tgcaccttag gggaaggggc tttgtgtttc atgcaggaag
     6961 agaaaggaaa gaccgcctcc tgccttttga agagatccag cttttaagtc ttagctatga
     7021 ctttaccagg gcaggttatg acaatattca ttttccaact gctggccctc tgccttttat
     7081 agctatctta aaagcttaag tttgagttgc agcatctgtc tgacaggtgc caagttcctt
     7141 ttggcagggg aaagatcact actttgtatc ttccgttgcc tcagattcct gtggcccctg
     7201 agatcccgcg aatcctcatt ctccctaaac atgttaaaaa tccatttttg tggatattaa
     7261 agtagcaatt acactgtaag cattttatgt gctttttggg tctggtttat ttttcttttc
     7321 atcatatata atctgaattc agcattagtt tctcccattt ctctagtatc tccaacagaa
     7381 tttttatgtc ccagcttgtg ttagacagaa gtgaaatatt aaggaggata gatttaaggg
     7441 aaacttgtgc aacttttttt taaagcactg ttctcaacca tttaatttat taaaaggaga
     7501 tgctgctgta gctcttgatt tatcagcaac cactcttttg tttacagagt tatggtttca
     7561 tttgttttgc tctctactgg aaacaaataa agttttctac cttattttca
//
LOCUS       XM_032620938            7676 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 12 member 6
            (SLC12A6), transcript variant X2, mRNA.
ACCESSION   XM_032620938
VERSION     XM_032620938.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7676
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7676
                     /gene="SLC12A6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 34 long SRA reads, 37 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116748083"
     CDS             1299..4706
                     /gene="SLC12A6"
                     /codon_start=1
                     /product="solute carrier family 12 member 6 isoform X2"
                     /protein_id="XP_032476829.1"
                     /db_xref="GeneID:116748083"
                     /translation="MHPSENTTKMASVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVR
                     FSSRESVPETSRSEPISEMSGATSSLATVALDPASDRTSNHQDVTEDDGHKKARNAYL
                     NNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLSRLANYTNLTQGAKEHEEAENITEG
                     KKKPTKTPQMGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGVLQAFAIVLICCCCTML
                     TAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTTFAAAMYILGAIEIF
                     LVYIVPQAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLA
                     CVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDICSKTKEINNMTVPSKLWG
                     FFCNSSQFFNATCDEYFVHNNVTSIQGIPGLASGVITENLWSNYIPKGEIIEKPSAKS
                     SDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILA
                     ILTTSFVYLSNVVLFGACVEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTC
                     GAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAVIAELGILIASL
                     DLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFI
                     SSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNW
                     RPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGEALAAEQT
                     IKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDAR
                     AWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFL
                     LKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHDSDISAYT
                     YERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIGSDEDEETETYQEKV
                     HMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKL
                     VLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS"
     misc_feature    1578..4703
                     /gene="SLC12A6"
                     /note="K-Cl cotransporter; Region: 2a30; TIGR00930"
                     /db_xref="CDD:273347"
ORIGIN      
        1 agcggggagg aaagggaggg gctgcggcgc cgccggcaca gcccgccggg cccggggccg
       61 ggggcggcga ggtcacgtaa ctgctgctct ggcatctgac cggggaggag gctccctccc
      121 cggcagcccg agccccccgg cgcccgccgc ggctcggaaa cagttacccg ctggtaaaca
      181 acagctgcgc gcgcatccga atcagctggc gccgggatcc cgcacctgcg acctcctcct
      241 accctcatcc tcgccgctcc ctcctgctca gccagggcca gcctgcgagg ccgtctcctc
      301 ttctgttagg gcccgaagga agaacagcga aggggctgac cttgcgccgg ggccctggta
      361 ggggaggaaa gcgtctccgg caaaggggtg gctcgtcctg tcacacgcag gagaaaccca
      421 gcaaaccgat cgggggctcg atggactagc agctacctgc cacgaccctg aactgcagtc
      481 cgcggagtct cgatccgcta gccgcctcct cccagatccc agggaccttt ctgccagaag
      541 agcgggaggg ccacccccgc agacctctcg gaggcaggaa tccgctttgc ccctgcaacc
      601 tcctctcctc acccttgtct cattctcctc catccatagt gtgcgatatt tttcccgtta
      661 tgcatgctca cctctcccac cagacccaag tggattatcg gcctcaaaaa catcgggtgg
      721 ctctacacac atttcctccc agccagacct gtggggtatt cacctgatac acaacaggtg
      781 gtcgggtgta caccgtttcg caatctgatc tatactgtct atattcgcct gataagggtg
      841 ggcctctgcg cactttgctc atctagtcgt gggacattta cagataaggg actaactacc
      901 tcggcagaaa ccttaaggtc gaggagagaa aggcttcgtc acctgcttct ctgagaccat
      961 ggctgtctgc ccgcatccct ggaccaggcg agatgactaa gatagctctt cattctgaag
     1021 gaacgaagtt acacgagatt gtcatcgttt gtcttttttt tttttcctta aatatttttc
     1081 agctgctggt agtgcacttt ttaggacagg cggcttgaat tctgagtaga aggagtcata
     1141 tatagtggct ttttgtgtgg tgtaaatcaa ggtaattgag agtttttttt ttaagttatc
     1201 ttttctattt ttgcaaccaa aattgctagc ataggaggaa gggttttgca gggttttttc
     1261 ttttttcttt gtccttataa aggaaaagaa aaagaaaaat gcatccttca gaaaacacca
     1321 ccaagatggc ttcagttcgg ttcatggtga caccaacaaa gatcgatgac attccaggtt
     1381 tgtcagacac cagcccggac ctcagttctc gatccagttc ccgggtaaga tttagctccc
     1441 gggaaagtgt acctgaaaca agccgtagtg agcctataag tgagatgtct ggagccacca
     1501 gttcactggc gactgttgca ctggatccag ctagtgaccg gacttctaac caccaggatg
     1561 ttactgagga tgatggacat aagaaagctc gaaatgctta tcttaacaat tccaattatg
     1621 aagaaggaga tgaatatttt gataaaaatt tggcactctt tgaggaagaa atggacacca
     1681 gaccaaaggt gtcttctctc ctcagccgct tggccaatta cactaacctg acgcaaggag
     1741 caaaggaaca tgaagaggca gagaacatca ctgaagggaa aaagaagccc accaagaccc
     1801 cccaaatggg tactttcatg ggtgtttacc tcccatgtct acaaaatatt tttggagtga
     1861 tcctgtttct acgccttaca tgggtggtgg gcacagctgg agttctgcag gcctttgcaa
     1921 ttgtccttat ctgctgctgt tgtacaatgt tgactgctat ctccatgagt gccattgcca
     1981 ctaatggagt ggtgccagct gggggctcat actttatgat ttcccgagca ctgggcccag
     2041 agtttggtgg ggctgttggc ctctgctttt atcttggtac cacatttgca gcagccatgt
     2101 atatccttgg tgccattgaa atttttctgg tatatattgt cccccaagct gccatctttc
     2161 atagtgacga tgcactcaag gagtcagcag ccatgctaaa taacatgcgt gtctacggca
     2221 cagccttctt ggtcctcatg gtattggtgg tattcatcgg tgtacgctat gtgaacaagt
     2281 ttgcctcgct ctttctggcc tgtgtcattg tgtccatctt ggccatctat gctggagcca
     2341 tcaagtcttc ttttgcccct ccacacttcc cggtctgcat gctgggcaac cgcacccttt
     2401 catcaaggca cattgatatt tgctcgaaga ctaaggaaat taacaacatg acagtaccgt
     2461 caaagttatg gggcttcttc tgtaattcaa gtcagttttt caatgccacc tgtgatgaat
     2521 actttgttca caataatgtc acttcaatcc agggcatccc tggattggct agcggtgtca
     2581 ttacagagaa tctttggagt aattatatac caaagggaga gattattgaa aagccctcag
     2641 ccaaatcttc tgatgtctta ggcagcttaa accatgagta tgtccttgtt gacattacca
     2701 cctctttcac tcttctggtg gggatcttct ttccatctgt cacaggtatc atggctggat
     2761 caaacagatc tggagatctg aaagacgctc aaaagtctat tcccattggc actatcctcg
     2821 ccatcctgac tacctccttt gtttatttaa gcaatgttgt cctttttggt gcatgtgttg
     2881 aaggtgttgt tctcagagac aagtttgggg atgctgtgaa aggtaatctc gtggtgggta
     2941 ccttatcttg gccgtccccg tgggtgattg ttattggctc cttcttctcc acgtgtgggg
     3001 ctggacttca gagtctcaca ggtgcaccga ggctgctaca ggctatagcc aaggataaca
     3061 tcataccctt tctgagggtg tttggtcaca gcaaagccaa tggggaacct acctgggctt
     3121 tacttctaac tgctgtcatt gcagagctgg gaatccttat tgcctccctg gatcttgtgg
     3181 ccccaattct ttccatgttt tttctcatgt gttacctctt cgtgaacttg gcatgtgcct
     3241 tgcaaacatt acttcgaaca cccaattgga gaccccggtt ccgctactac cactgggccc
     3301 tctctttcat gggaatgagt atctgtctgg ctctgatgtt tatttcttcc tggtattatg
     3361 ccatcgtagc tatggtaata gctggtatga tctacaagta catcgagtac caaggagctg
     3421 agaaagaatg gggtgatggt atccgcgggc tgtccctcag tgcagcccga tttgctttgc
     3481 ttcggctgga agaaggacct ccacacacta aaaactggag gcctcagttg cttgtactgc
     3541 tgaaactaga tgaagaccta catgtcaagc atcctcgcct cctcaccttt gcttcacagc
     3601 ttaaggcagg aaagggtctc actattgtgg gctctgtcat cgtggggaac ttcctggaga
     3661 actatggtga agctttagct gctgagcaga ccataaagca tctaatggag gcagagaagg
     3721 tgaaaggatt ctcccagctg gtggtggccg ccaagctgag agagggcatt tcccacctca
     3781 tccagtcatg tggccttggg ggcatgaagc acaacacagt ggtgatgggg tggccaaatg
     3841 gctggcgcca gagtgaagat gctcgagctt ggaagacatt tattggcaca gttcgagtga
     3901 caactgctgc ccatctggcc ctgctggtgg ctaaaaacat ctccttcttt cccagcaatg
     3961 tggagcagtt ttctgagggc aacattgatg tgtggtggat cgtgcatgac ggggggatgc
     4021 tcatgctctt accattccta ctgaaacagc acaaggtgtg gcgaaaatgc agtatacgga
     4081 tcttcacagt agcccaacta gaagacaaca gtattcagat gaagaaggac ctggccacct
     4141 tcctgtatca ccttcgcatt gaggcagagg tggaagtggt ggagatgcat gacagtgaca
     4201 tatcagctta tacttacgag cgcaccctga tgatggagca aaggtcccag atgctccggc
     4261 acatgcgact atccaaaaca gagcgggaca gagaggcaca gctggtaaaa gatcggaatt
     4321 caatgctacg attgaccagc attggctctg acgaggatga agagacagag acctatcagg
     4381 agaaggtgca catgacctgg acgaaagaca agtacatggc atcccggggg caaaaggcca
     4441 agtcaatgga aggattccag gacctactta acatgcgtcc ggaccagtcc aatgtgaggc
     4501 ggatgcatac agcagtgaag ctcaatgagg ttatagttaa caagtcccat gaagcaaagc
     4561 tggttttgtt gaatatgcca gggccacccc gaaaccctga gggtgatgaa aactacatgg
     4621 agttcctaga agtgctcact gaaggactag agcgagtcct tcttgtccga ggtggtggca
     4681 gtgaagtgat caccatttat tcataatcta cccctgaatg actctgctgg gcctcacctt
     4741 tccagaaagg tttccatcct ccatggaagt gccagctctt tactaccact cccatcaact
     4801 agagacctgc gttctgtgta catcacgctg aactcttaat gagctgagcc tcaagtactt
     4861 gtgcagaaaa gtacaaacag atctgctctt tgctaccaca tgacctgctg tccttaagga
     4921 agaagcagat attccctcaa cctcagaaca acgctcaagt cctacaagcc atgcccgtac
     4981 cagataaagg caagttagaa ttaacaagct aaaccaataa aatgaattgg caaaagggat
     5041 gctagaaatt caactgaaga caaaagacaa gtacacatct aacattacag atgagtctca
     5101 gaagtcatga ttcaatgatg acaccatggg ggtaacagcc agacacagcc acatcatact
     5161 aaagaattca tggccaagta cacggggagc taacatcttt gtggagacat ccatggcaag
     5221 ccaagatgaa aattttcgtc agtgtatcca ctgctctcca ggactctaat tttacattag
     5281 ggtaccaata tataaaaatg gaaacacgaa actgcagccc ctacttcctc caaaataaga
     5341 ttcccccaaa atatgtttaa gtacacatac tgtgttgtat atttcagcta tttctcaaac
     5401 ccatcctgtg gttaggattg taatacaggc actgttacca tggaaactgt tttttaaaag
     5461 gttgagtaaa aattatttct ttcaggttct ttgcaaatgg acaaactaag cgaactccaa
     5521 aaggtagcta tcaagattta catacatgca gcctgtggtt acctatgaga catgggcaaa
     5581 atatataagc tgttatttaa gaaaggcaga tgatgatgca tattgaccaa taggttctcc
     5641 tttccttctc ccttttatgc cctctgggtt ataggcacag atcaaaaatc ataagaacac
     5701 acacactagg aagactggct aaaatccttg gctaaaacct ttggattatc cttcaaaggg
     5761 agaatccagc agtggaattc gaacattata gccatactcc ttccatagtg ccaaagttac
     5821 tgagctgctg ctactcttct tacctacttc actgaagtgg catgcaattg gcattggcct
     5881 atttcaagaa acttatttca ttaggaaacc tgtggactca ttcccaaagc cagccgtaat
     5941 gaagacttga gggcatgcag ctcagcacta agtatgagca tttttttttc ctttcaattt
     6001 tattcttcat tttgactgca gaaacttgga tctgaactaa gagattatcc aaggtaacag
     6061 tcttctattt cagttttgtt ttcagaaagc tctaaatgtg tcaaggaaat gcttctgcaa
     6121 gcttagcttt ttatttgcta acttaatgat cacaaaacac ctgcttttcg agcataggga
     6181 aactgccctg tgtgactgag tggtaatttc atatatgtga aatcttcatt tattgtacag
     6241 gatagatagg gtattccaag aaactatctt gcctgtgttc atgtctgctt ttgaatttca
     6301 ttttattaat gataaatagt accactcttt cattaccagt aggatatgga acaagctgac
     6361 ttgctccata gtctgcagac tattcatctg acccttatgg acagaggaga aaaacccttc
     6421 aatatggctt aagaaacgga gtcattttgg tttattccct ttgttcttct ctcagtgtcc
     6481 cagcccagtc aggtagcaag gcagacaaga tcttttaagt cttttttttc tgctgcttcc
     6541 tgcagagggt agaagcattg tttacaactt tcattgcaac actccattgc taagttgagt
     6601 ccagcagtag tggaacaggt accctaggac ccaagctatt aaagacccat gctgtaaagg
     6661 tcagcttgcc caggaactcc tttacattta cacaaaacct ctggccaaat ggacagaaag
     6721 taaggttagt tttagaagag ctttttgtgg ctggagctct gtaagaatcc tttaaaggga
     6781 taatggaatt agtggctact aatatagccc ctactttagg ccctaaaaca caatcactgt
     6841 tacatgggga agtggttatt aggccagatt taaactcatc tctgtctaga gcatttcatg
     6901 tctatgtgtt gcttatgttg tctgcaaact gtcttgtctc ttttaatcac tgcaaataaa
     6961 gcaataccga aaacttgatg agagaatgca ccttagggga aggggctttg tgtttcatgc
     7021 aggaagagaa aggaaagacc gcctcctgcc ttttgaagag atccagcttt taagtcttag
     7081 ctatgacttt accagggcag gttatgacaa tattcatttt ccaactgctg gccctctgcc
     7141 ttttatagct atcttaaaag cttaagtttg agttgcagca tctgtctgac aggtgccaag
     7201 ttccttttgg caggggaaag atcactactt tgtatcttcc gttgcctcag attcctgtgg
     7261 cccctgagat cccgcgaatc ctcattctcc ctaaacatgt taaaaatcca tttttgtgga
     7321 tattaaagta gcaattacac tgtaagcatt ttatgtgctt tttgggtctg gtttattttt
     7381 cttttcatca tatataatct gaattcagca ttagtttctc ccatttctct agtatctcca
     7441 acagaatttt tatgtcccag cttgtgttag acagaagtga aatattaagg aggatagatt
     7501 taagggaaac ttgtgcaact tttttttaaa gcactgttct caaccattta atttattaaa
     7561 aggagatgct gctgtagctc ttgatttatc agcaaccact cttttgttta cagagttatg
     7621 gtttcatttg ttttgctctc tactggaaac aaataaagtt ttctacctta ttttca
//
LOCUS       XM_032620947            6409 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 12 member 6
            (SLC12A6), transcript variant X3, mRNA.
ACCESSION   XM_032620947
VERSION     XM_032620947.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6409
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6409
                     /gene="SLC12A6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 36 long SRA reads, 38 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 9 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116748083"
     CDS             134..3439
                     /gene="SLC12A6"
                     /codon_start=1
                     /product="solute carrier family 12 member 6 isoform X3"
                     /protein_id="XP_032476838.1"
                     /db_xref="GeneID:116748083"
                     /translation="MPHFTVTKVEDTEEGAAASVSQEGEPSLAEIKARIQPSDESDPS
                     QNSITGEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLS
                     RLANYTNLTQGAKEHEEAENITEGKKKPTKTPQMGTFMGVYLPCLQNIFGVILFLRLT
                     WVVGTAGVLQAFAIVLICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGA
                     VGLCFYLGTTFAAAMYILGAIEIFLVYIVPQAAIFHSDDALKESAAMLNNMRVYGTAF
                     LVLMVLVVFIGVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLS
                     SRHIDICSKTKEINNMTVPSKLWGFFCNSSQFFNATCDEYFVHNNVTSIQGIPGLASG
                     VITENLWSNYIPKGEIIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGI
                     MAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACVEGVVLRDKFGDAVKG
                     NLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKA
                     NGEPTWALLLTAVIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWR
                     PRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIR
                     GLSLSAARFALLRLEEGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGL
                     TIVGSVIVGNFLENYGEALAAEQTIKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCG
                     LGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQ
                     FSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATF
                     LYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDR
                     NSMLRLTSIGSDEDEETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQS
                     NVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLL
                     VRGGGSEVITIYS"
     misc_feature    311..3436
                     /gene="SLC12A6"
                     /note="K-Cl cotransporter; Region: 2a30; TIGR00930"
                     /db_xref="CDD:273347"
ORIGIN      
        1 ccgattccca gactaggtct cctgtggaca gtgatcagag tcggaaaggg cacagcaagg
       61 aagaggtagg cagggaaggt agactggaag gaagcttaaa tatagggtag agcacgggtt
      121 cctaactaca gcaatgccgc acttcaccgt gactaaggta gaggatacag aggagggggc
      181 agcagcatcg gtctcccaag agggggagcc cagcttagca gaaataaaag cccggattca
      241 gccttcagat gaatcagacc cgagtcagaa ctccatcaca ggggaacaca gccagctgtt
      301 agatgatgga cataagaaag ctcgaaatgc ttatcttaac aattccaatt atgaagaagg
      361 agatgaatat tttgataaaa atttggcact ctttgaggaa gaaatggaca ccagaccaaa
      421 ggtgtcttct ctcctcagcc gcttggccaa ttacactaac ctgacgcaag gagcaaagga
      481 acatgaagag gcagagaaca tcactgaagg gaaaaagaag cccaccaaga ccccccaaat
      541 gggtactttc atgggtgttt acctcccatg tctacaaaat atttttggag tgatcctgtt
      601 tctacgcctt acatgggtgg tgggcacagc tggagttctg caggcctttg caattgtcct
      661 tatctgctgc tgttgtacaa tgttgactgc tatctccatg agtgccattg ccactaatgg
      721 agtggtgcca gctgggggct catactttat gatttcccga gcactgggcc cagagtttgg
      781 tggggctgtt ggcctctgct tttatcttgg taccacattt gcagcagcca tgtatatcct
      841 tggtgccatt gaaatttttc tggtatatat tgtcccccaa gctgccatct ttcatagtga
      901 cgatgcactc aaggagtcag cagccatgct aaataacatg cgtgtctacg gcacagcctt
      961 cttggtcctc atggtattgg tggtattcat cggtgtacgc tatgtgaaca agtttgcctc
     1021 gctctttctg gcctgtgtca ttgtgtccat cttggccatc tatgctggag ccatcaagtc
     1081 ttcttttgcc cctccacact tcccggtctg catgctgggc aaccgcaccc tttcatcaag
     1141 gcacattgat atttgctcga agactaagga aattaacaac atgacagtac cgtcaaagtt
     1201 atggggcttc ttctgtaatt caagtcagtt tttcaatgcc acctgtgatg aatactttgt
     1261 tcacaataat gtcacttcaa tccagggcat ccctggattg gctagcggtg tcattacaga
     1321 gaatctttgg agtaattata taccaaaggg agagattatt gaaaagccct cagccaaatc
     1381 ttctgatgtc ttaggcagct taaaccatga gtatgtcctt gttgacatta ccacctcttt
     1441 cactcttctg gtggggatct tctttccatc tgtcacaggt atcatggctg gatcaaacag
     1501 atctggagat ctgaaagacg ctcaaaagtc tattcccatt ggcactatcc tcgccatcct
     1561 gactacctcc tttgtttatt taagcaatgt tgtccttttt ggtgcatgtg ttgaaggtgt
     1621 tgttctcaga gacaagtttg gggatgctgt gaaaggtaat ctcgtggtgg gtaccttatc
     1681 ttggccgtcc ccgtgggtga ttgttattgg ctccttcttc tccacgtgtg gggctggact
     1741 tcagagtctc acaggtgcac cgaggctgct acaggctata gccaaggata acatcatacc
     1801 ctttctgagg gtgtttggtc acagcaaagc caatggggaa cctacctggg ctttacttct
     1861 aactgctgtc attgcagagc tgggaatcct tattgcctcc ctggatcttg tggccccaat
     1921 tctttccatg ttttttctca tgtgttacct cttcgtgaac ttggcatgtg ccttgcaaac
     1981 attacttcga acacccaatt ggagaccccg gttccgctac taccactggg ccctctcttt
     2041 catgggaatg agtatctgtc tggctctgat gtttatttct tcctggtatt atgccatcgt
     2101 agctatggta atagctggta tgatctacaa gtacatcgag taccaaggag ctgagaaaga
     2161 atggggtgat ggtatccgcg ggctgtccct cagtgcagcc cgatttgctt tgcttcggct
     2221 ggaagaagga cctccacaca ctaaaaactg gaggcctcag ttgcttgtac tgctgaaact
     2281 agatgaagac ctacatgtca agcatcctcg cctcctcacc tttgcttcac agcttaaggc
     2341 aggaaagggt ctcactattg tgggctctgt catcgtgggg aacttcctgg agaactatgg
     2401 tgaagcttta gctgctgagc agaccataaa gcatctaatg gaggcagaga aggtgaaagg
     2461 attctcccag ctggtggtgg ccgccaagct gagagagggc atttcccacc tcatccagtc
     2521 atgtggcctt gggggcatga agcacaacac agtggtgatg gggtggccaa atggctggcg
     2581 ccagagtgaa gatgctcgag cttggaagac atttattggc acagttcgag tgacaactgc
     2641 tgcccatctg gccctgctgg tggctaaaaa catctccttc tttcccagca atgtggagca
     2701 gttttctgag ggcaacattg atgtgtggtg gatcgtgcat gacgggggga tgctcatgct
     2761 cttaccattc ctactgaaac agcacaaggt gtggcgaaaa tgcagtatac ggatcttcac
     2821 agtagcccaa ctagaagaca acagtattca gatgaagaag gacctggcca ccttcctgta
     2881 tcaccttcgc attgaggcag aggtggaagt ggtggagatg catgacagtg acatatcagc
     2941 ttatacttac gagcgcaccc tgatgatgga gcaaaggtcc cagatgctcc ggcacatgcg
     3001 actatccaaa acagagcggg acagagaggc acagctggta aaagatcgga attcaatgct
     3061 acgattgacc agcattggct ctgacgagga tgaagagaca gagacctatc aggagaaggt
     3121 gcacatgacc tggacgaaag acaagtacat ggcatcccgg gggcaaaagg ccaagtcaat
     3181 ggaaggattc caggacctac ttaacatgcg tccggaccag tccaatgtga ggcggatgca
     3241 tacagcagtg aagctcaatg aggttatagt taacaagtcc catgaagcaa agctggtttt
     3301 gttgaatatg ccagggccac cccgaaaccc tgagggtgat gaaaactaca tggagttcct
     3361 agaagtgctc actgaaggac tagagcgagt ccttcttgtc cgaggtggtg gcagtgaagt
     3421 gatcaccatt tattcataat ctacccctga atgactctgc tgggcctcac ctttccagaa
     3481 aggtttccat cctccatgga agtgccagct ctttactacc actcccatca actagagacc
     3541 tgcgttctgt gtacatcacg ctgaactctt aatgagctga gcctcaagta cttgtgcaga
     3601 aaagtacaaa cagatctgct ctttgctacc acatgacctg ctgtccttaa ggaagaagca
     3661 gatattccct caacctcaga acaacgctca agtcctacaa gccatgcccg taccagataa
     3721 aggcaagtta gaattaacaa gctaaaccaa taaaatgaat tggcaaaagg gatgctagaa
     3781 attcaactga agacaaaaga caagtacaca tctaacatta cagatgagtc tcagaagtca
     3841 tgattcaatg atgacaccat gggggtaaca gccagacaca gccacatcat actaaagaat
     3901 tcatggccaa gtacacgggg agctaacatc tttgtggaga catccatggc aagccaagat
     3961 gaaaattttc gtcagtgtat ccactgctct ccaggactct aattttacat tagggtacca
     4021 atatataaaa atggaaacac gaaactgcag cccctacttc ctccaaaata agattccccc
     4081 aaaatatgtt taagtacaca tactgtgttg tatatttcag ctatttctca aacccatcct
     4141 gtggttagga ttgtaataca ggcactgtta ccatggaaac tgttttttaa aaggttgagt
     4201 aaaaattatt tctttcaggt tctttgcaaa tggacaaact aagcgaactc caaaaggtag
     4261 ctatcaagat ttacatacat gcagcctgtg gttacctatg agacatgggc aaaatatata
     4321 agctgttatt taagaaaggc agatgatgat gcatattgac caataggttc tcctttcctt
     4381 ctccctttta tgccctctgg gttataggca cagatcaaaa atcataagaa cacacacact
     4441 aggaagactg gctaaaatcc ttggctaaaa cctttggatt atccttcaaa gggagaatcc
     4501 agcagtggaa ttcgaacatt atagccatac tccttccata gtgccaaagt tactgagctg
     4561 ctgctactct tcttacctac ttcactgaag tggcatgcaa ttggcattgg cctatttcaa
     4621 gaaacttatt tcattaggaa acctgtggac tcattcccaa agccagccgt aatgaagact
     4681 tgagggcatg cagctcagca ctaagtatga gcattttttt ttcctttcaa ttttattctt
     4741 cattttgact gcagaaactt ggatctgaac taagagatta tccaaggtaa cagtcttcta
     4801 tttcagtttt gttttcagaa agctctaaat gtgtcaagga aatgcttctg caagcttagc
     4861 tttttatttg ctaacttaat gatcacaaaa cacctgcttt tcgagcatag ggaaactgcc
     4921 ctgtgtgact gagtggtaat ttcatatatg tgaaatcttc atttattgta caggatagat
     4981 agggtattcc aagaaactat cttgcctgtg ttcatgtctg cttttgaatt tcattttatt
     5041 aatgataaat agtaccactc tttcattacc agtaggatat ggaacaagct gacttgctcc
     5101 atagtctgca gactattcat ctgaccctta tggacagagg agaaaaaccc ttcaatatgg
     5161 cttaagaaac ggagtcattt tggtttattc cctttgttct tctctcagtg tcccagccca
     5221 gtcaggtagc aaggcagaca agatctttta agtctttttt ttctgctgct tcctgcagag
     5281 ggtagaagca ttgtttacaa ctttcattgc aacactccat tgctaagttg agtccagcag
     5341 tagtggaaca ggtaccctag gacccaagct attaaagacc catgctgtaa aggtcagctt
     5401 gcccaggaac tcctttacat ttacacaaaa cctctggcca aatggacaga aagtaaggtt
     5461 agttttagaa gagctttttg tggctggagc tctgtaagaa tcctttaaag ggataatgga
     5521 attagtggct actaatatag cccctacttt aggccctaaa acacaatcac tgttacatgg
     5581 ggaagtggtt attaggccag atttaaactc atctctgtct agagcatttc atgtctatgt
     5641 gttgcttatg ttgtctgcaa actgtcttgt ctcttttaat cactgcaaat aaagcaatac
     5701 cgaaaacttg atgagagaat gcaccttagg ggaaggggct ttgtgtttca tgcaggaaga
     5761 gaaaggaaag accgcctcct gccttttgaa gagatccagc ttttaagtct tagctatgac
     5821 tttaccaggg caggttatga caatattcat tttccaactg ctggccctct gccttttata
     5881 gctatcttaa aagcttaagt ttgagttgca gcatctgtct gacaggtgcc aagttccttt
     5941 tggcagggga aagatcacta ctttgtatct tccgttgcct cagattcctg tggcccctga
     6001 gatcccgcga atcctcattc tccctaaaca tgttaaaaat ccatttttgt ggatattaaa
     6061 gtagcaatta cactgtaagc attttatgtg ctttttgggt ctggtttatt tttcttttca
     6121 tcatatataa tctgaattca gcattagttt ctcccatttc tctagtatct ccaacagaat
     6181 ttttatgtcc cagcttgtgt tagacagaag tgaaatatta aggaggatag atttaaggga
     6241 aacttgtgca actttttttt aaagcactgt tctcaaccat ttaatttatt aaaaggagat
     6301 gctgctgtag ctcttgattt atcagcaacc actcttttgt ttacagagtt atggtttcat
     6361 ttgttttgct ctctactgga aacaaataaa gttttctacc ttattttca
//
LOCUS       XM_032620954            6364 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus solute carrier family 12 member 6
            (SLC12A6), transcript variant X4, mRNA.
ACCESSION   XM_032620954
VERSION     XM_032620954.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6364
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6364
                     /gene="SLC12A6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 long SRA reads, 35 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:116748083"
     CDS             134..3394
                     /gene="SLC12A6"
                     /codon_start=1
                     /product="solute carrier family 12 member 6 isoform X4"
                     /protein_id="XP_032476845.1"
                     /db_xref="GeneID:116748083"
                     /translation="MPHFTVTKVEDTEEGAAASVSQEGEPSLAEIKARIQPSDESDDG
                     HKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLSRLANYTNLTQGAKEH
                     EEAENITEGKKKPTKTPQMGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGVLQAFAIV
                     LICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTTFAAAM
                     YILGAIEIFLVYIVPQAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYV
                     NKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDICSKTKEINN
                     MTVPSKLWGFFCNSSQFFNATCDEYFVHNNVTSIQGIPGLASGVITENLWSNYIPKGE
                     IIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQK
                     SIPIGTILAILTTSFVYLSNVVLFGACVEGVVLRDKFGDAVKGNLVVGTLSWPSPWVI
                     VIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAVIA
                     ELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGM
                     SICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLE
                     EGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENY
                     GEALAAEQTIKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPN
                     GWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDG
                     GMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEM
                     HDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIGSDEDE
                     ETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVI
                     VNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS"
     misc_feature    266..3391
                     /gene="SLC12A6"
                     /note="K-Cl cotransporter; Region: 2a30; TIGR00930"
                     /db_xref="CDD:273347"
ORIGIN      
        1 ccgattccca gactaggtct cctgtggaca gtgatcagag tcggaaaggg cacagcaagg
       61 aagaggtagg cagggaaggt agactggaag gaagcttaaa tatagggtag agcacgggtt
      121 cctaactaca gcaatgccgc acttcaccgt gactaaggta gaggatacag aggagggggc
      181 agcagcatcg gtctcccaag agggggagcc cagcttagca gaaataaaag cccggattca
      241 gccttcagat gaatcagatg atggacataa gaaagctcga aatgcttatc ttaacaattc
      301 caattatgaa gaaggagatg aatattttga taaaaatttg gcactctttg aggaagaaat
      361 ggacaccaga ccaaaggtgt cttctctcct cagccgcttg gccaattaca ctaacctgac
      421 gcaaggagca aaggaacatg aagaggcaga gaacatcact gaagggaaaa agaagcccac
      481 caagaccccc caaatgggta ctttcatggg tgtttacctc ccatgtctac aaaatatttt
      541 tggagtgatc ctgtttctac gccttacatg ggtggtgggc acagctggag ttctgcaggc
      601 ctttgcaatt gtccttatct gctgctgttg tacaatgttg actgctatct ccatgagtgc
      661 cattgccact aatggagtgg tgccagctgg gggctcatac tttatgattt cccgagcact
      721 gggcccagag tttggtgggg ctgttggcct ctgcttttat cttggtacca catttgcagc
      781 agccatgtat atccttggtg ccattgaaat ttttctggta tatattgtcc cccaagctgc
      841 catctttcat agtgacgatg cactcaagga gtcagcagcc atgctaaata acatgcgtgt
      901 ctacggcaca gccttcttgg tcctcatggt attggtggta ttcatcggtg tacgctatgt
      961 gaacaagttt gcctcgctct ttctggcctg tgtcattgtg tccatcttgg ccatctatgc
     1021 tggagccatc aagtcttctt ttgcccctcc acacttcccg gtctgcatgc tgggcaaccg
     1081 caccctttca tcaaggcaca ttgatatttg ctcgaagact aaggaaatta acaacatgac
     1141 agtaccgtca aagttatggg gcttcttctg taattcaagt cagtttttca atgccacctg
     1201 tgatgaatac tttgttcaca ataatgtcac ttcaatccag ggcatccctg gattggctag
     1261 cggtgtcatt acagagaatc tttggagtaa ttatatacca aagggagaga ttattgaaaa
     1321 gccctcagcc aaatcttctg atgtcttagg cagcttaaac catgagtatg tccttgttga
     1381 cattaccacc tctttcactc ttctggtggg gatcttcttt ccatctgtca caggtatcat
     1441 ggctggatca aacagatctg gagatctgaa agacgctcaa aagtctattc ccattggcac
     1501 tatcctcgcc atcctgacta cctcctttgt ttatttaagc aatgttgtcc tttttggtgc
     1561 atgtgttgaa ggtgttgttc tcagagacaa gtttggggat gctgtgaaag gtaatctcgt
     1621 ggtgggtacc ttatcttggc cgtccccgtg ggtgattgtt attggctcct tcttctccac
     1681 gtgtggggct ggacttcaga gtctcacagg tgcaccgagg ctgctacagg ctatagccaa
     1741 ggataacatc ataccctttc tgagggtgtt tggtcacagc aaagccaatg gggaacctac
     1801 ctgggcttta cttctaactg ctgtcattgc agagctggga atccttattg cctccctgga
     1861 tcttgtggcc ccaattcttt ccatgttttt tctcatgtgt tacctcttcg tgaacttggc
     1921 atgtgccttg caaacattac ttcgaacacc caattggaga ccccggttcc gctactacca
     1981 ctgggccctc tctttcatgg gaatgagtat ctgtctggct ctgatgttta tttcttcctg
     2041 gtattatgcc atcgtagcta tggtaatagc tggtatgatc tacaagtaca tcgagtacca
     2101 aggagctgag aaagaatggg gtgatggtat ccgcgggctg tccctcagtg cagcccgatt
     2161 tgctttgctt cggctggaag aaggacctcc acacactaaa aactggaggc ctcagttgct
     2221 tgtactgctg aaactagatg aagacctaca tgtcaagcat cctcgcctcc tcacctttgc
     2281 ttcacagctt aaggcaggaa agggtctcac tattgtgggc tctgtcatcg tggggaactt
     2341 cctggagaac tatggtgaag ctttagctgc tgagcagacc ataaagcatc taatggaggc
     2401 agagaaggtg aaaggattct cccagctggt ggtggccgcc aagctgagag agggcatttc
     2461 ccacctcatc cagtcatgtg gccttggggg catgaagcac aacacagtgg tgatggggtg
     2521 gccaaatggc tggcgccaga gtgaagatgc tcgagcttgg aagacattta ttggcacagt
     2581 tcgagtgaca actgctgccc atctggccct gctggtggct aaaaacatct ccttctttcc
     2641 cagcaatgtg gagcagtttt ctgagggcaa cattgatgtg tggtggatcg tgcatgacgg
     2701 ggggatgctc atgctcttac cattcctact gaaacagcac aaggtgtggc gaaaatgcag
     2761 tatacggatc ttcacagtag cccaactaga agacaacagt attcagatga agaaggacct
     2821 ggccaccttc ctgtatcacc ttcgcattga ggcagaggtg gaagtggtgg agatgcatga
     2881 cagtgacata tcagcttata cttacgagcg caccctgatg atggagcaaa ggtcccagat
     2941 gctccggcac atgcgactat ccaaaacaga gcgggacaga gaggcacagc tggtaaaaga
     3001 tcggaattca atgctacgat tgaccagcat tggctctgac gaggatgaag agacagagac
     3061 ctatcaggag aaggtgcaca tgacctggac gaaagacaag tacatggcat cccgggggca
     3121 aaaggccaag tcaatggaag gattccagga cctacttaac atgcgtccgg accagtccaa
     3181 tgtgaggcgg atgcatacag cagtgaagct caatgaggtt atagttaaca agtcccatga
     3241 agcaaagctg gttttgttga atatgccagg gccaccccga aaccctgagg gtgatgaaaa
     3301 ctacatggag ttcctagaag tgctcactga aggactagag cgagtccttc ttgtccgagg
     3361 tggtggcagt gaagtgatca ccatttattc ataatctacc cctgaatgac tctgctgggc
     3421 ctcacctttc cagaaaggtt tccatcctcc atggaagtgc cagctcttta ctaccactcc
     3481 catcaactag agacctgcgt tctgtgtaca tcacgctgaa ctcttaatga gctgagcctc
     3541 aagtacttgt gcagaaaagt acaaacagat ctgctctttg ctaccacatg acctgctgtc
     3601 cttaaggaag aagcagatat tccctcaacc tcagaacaac gctcaagtcc tacaagccat
     3661 gcccgtacca gataaaggca agttagaatt aacaagctaa accaataaaa tgaattggca
     3721 aaagggatgc tagaaattca actgaagaca aaagacaagt acacatctaa cattacagat
     3781 gagtctcaga agtcatgatt caatgatgac accatggggg taacagccag acacagccac
     3841 atcatactaa agaattcatg gccaagtaca cggggagcta acatctttgt ggagacatcc
     3901 atggcaagcc aagatgaaaa ttttcgtcag tgtatccact gctctccagg actctaattt
     3961 tacattaggg taccaatata taaaaatgga aacacgaaac tgcagcccct acttcctcca
     4021 aaataagatt cccccaaaat atgtttaagt acacatactg tgttgtatat ttcagctatt
     4081 tctcaaaccc atcctgtggt taggattgta atacaggcac tgttaccatg gaaactgttt
     4141 tttaaaaggt tgagtaaaaa ttatttcttt caggttcttt gcaaatggac aaactaagcg
     4201 aactccaaaa ggtagctatc aagatttaca tacatgcagc ctgtggttac ctatgagaca
     4261 tgggcaaaat atataagctg ttatttaaga aaggcagatg atgatgcata ttgaccaata
     4321 ggttctcctt tccttctccc ttttatgccc tctgggttat aggcacagat caaaaatcat
     4381 aagaacacac acactaggaa gactggctaa aatccttggc taaaaccttt ggattatcct
     4441 tcaaagggag aatccagcag tggaattcga acattatagc catactcctt ccatagtgcc
     4501 aaagttactg agctgctgct actcttctta cctacttcac tgaagtggca tgcaattggc
     4561 attggcctat ttcaagaaac ttatttcatt aggaaacctg tggactcatt cccaaagcca
     4621 gccgtaatga agacttgagg gcatgcagct cagcactaag tatgagcatt tttttttcct
     4681 ttcaatttta ttcttcattt tgactgcaga aacttggatc tgaactaaga gattatccaa
     4741 ggtaacagtc ttctatttca gttttgtttt cagaaagctc taaatgtgtc aaggaaatgc
     4801 ttctgcaagc ttagcttttt atttgctaac ttaatgatca caaaacacct gcttttcgag
     4861 catagggaaa ctgccctgtg tgactgagtg gtaatttcat atatgtgaaa tcttcattta
     4921 ttgtacagga tagatagggt attccaagaa actatcttgc ctgtgttcat gtctgctttt
     4981 gaatttcatt ttattaatga taaatagtac cactctttca ttaccagtag gatatggaac
     5041 aagctgactt gctccatagt ctgcagacta ttcatctgac ccttatggac agaggagaaa
     5101 aacccttcaa tatggcttaa gaaacggagt cattttggtt tattcccttt gttcttctct
     5161 cagtgtccca gcccagtcag gtagcaaggc agacaagatc ttttaagtct tttttttctg
     5221 ctgcttcctg cagagggtag aagcattgtt tacaactttc attgcaacac tccattgcta
     5281 agttgagtcc agcagtagtg gaacaggtac cctaggaccc aagctattaa agacccatgc
     5341 tgtaaaggtc agcttgccca ggaactcctt tacatttaca caaaacctct ggccaaatgg
     5401 acagaaagta aggttagttt tagaagagct ttttgtggct ggagctctgt aagaatcctt
     5461 taaagggata atggaattag tggctactaa tatagcccct actttaggcc ctaaaacaca
     5521 atcactgtta catggggaag tggttattag gccagattta aactcatctc tgtctagagc
     5581 atttcatgtc tatgtgttgc ttatgttgtc tgcaaactgt cttgtctctt ttaatcactg
     5641 caaataaagc aataccgaaa acttgatgag agaatgcacc ttaggggaag gggctttgtg
     5701 tttcatgcag gaagagaaag gaaagaccgc ctcctgcctt ttgaagagat ccagctttta
     5761 agtcttagct atgactttac cagggcaggt tatgacaata ttcattttcc aactgctggc
     5821 cctctgcctt ttatagctat cttaaaagct taagtttgag ttgcagcatc tgtctgacag
     5881 gtgccaagtt ccttttggca ggggaaagat cactactttg tatcttccgt tgcctcagat
     5941 tcctgtggcc cctgagatcc cgcgaatcct cattctccct aaacatgtta aaaatccatt
     6001 tttgtggata ttaaagtagc aattacactg taagcatttt atgtgctttt tgggtctggt
     6061 ttatttttct tttcatcata tataatctga attcagcatt agtttctccc atttctctag
     6121 tatctccaac agaattttta tgtcccagct tgtgttagac agaagtgaaa tattaaggag
     6181 gatagattta agggaaactt gtgcaacttt tttttaaagc actgttctca accatttaat
     6241 ttattaaaag gagatgctgc tgtagctctt gatttatcag caaccactct tttgtttaca
     6301 gagttatggt ttcatttgtt ttgctctcta ctggaaacaa ataaagtttt ctaccttatt
     6361 ttca
//
LOCUS       XM_032620966            1370 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus retinitis pigmentosa 9 protein-like
            (LOC116748103), mRNA.
ACCESSION   XM_032620966
VERSION     XM_032620966.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq; corrected model.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-656               VOSU01000015.1     101075706-101076361 c
            657-1370            VOSU01000015.1     101074990-101075703 c
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1370
                     /gene="LOC116748103"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116748103"
     CDS             312..878
                     /gene="LOC116748103"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: retinitis pigmentosa 9
                     protein-like"
                     /protein_id="XP_032476857.1"
                     /db_xref="GeneID:116748103"
                     /translation="MSSRPGCDDLGAGGAQRPQEPPEQELRLRREQKWQRLKHLESFY
                     EKPPPGLTKEDETKPEDCIPDVPGNEHAREFVAHAPTKGLWMPLGKEVKVMQCWCCKR
                     YGHQTGDKECPFFIKGNQKLEQFRVAHEDPMYDIIQENKRHEKDVRIQQLKQLLEDST
                     SDEDGSSSSSSECKEKHKKKKKEKHKKK"
ORIGIN      
        1 ggcttagacc agcgggcagt gggatggggc aggatgtttg taaagtcaga tttttataac
       61 aacaatatta tagtgctact gaacagcagg gaagtaatat gctgaagctg ggcctcattt
      121 cctcctgtaa ccctcgagag ggatgaaatg ctgttgagtc tgggatataa cactattaaa
      181 tgtctaaatc agtgaaggat gcaggaagat gagcatggta ctcaggaatg aaagactgtt
      241 taaagcgaag gaaaacaaat agttgctgat attttaaaaa tgaagtcttc gcggccccac
      301 acggggccgc aatgtcgtcc cggcccgggt gcgacgactt gggggccggg ggcgcacagc
      361 ggccgcagga gcctccagag caggagctga ggctgcgccg ggagcagaag tggcagcggc
      421 tcaagcacct ggagtccttt tatgaaaaac ctcctcctgg gcttaccaag gaagatgaga
      481 ctaagccaga agactgtata ccagatgtcc caggcaatga acatgccagg gaatttgtgg
      541 cccacgcacc aaccaaagga ctttggatgc cactggggaa agaagtcaaa gtcatgcagt
      601 gttggtgctg taaacgatat ggtcaccaaa caggcgacaa agaatgccct ttttttatca
      661 aaggcaacca aaagttagaa cagttcagag tagcacatga agatcccatg tatgacatca
      721 tacaagagaa taaaagacat gaaaaggacg taaggataca acagttaaaa cagttactgg
      781 aggattcaac atcagatgaa gatgggagca gctccagttc ctcagaatgt aaagagaaac
      841 acaagaaaaa gaagaaagaa aagcataaga aaaaatgaaa gcataagtct aagccaaatg
      901 agagttcaga ctcagaatga caagagcttg gcttgttcaa cactctcttc ccaaaaatca
      961 aacactgtgg ccaaagatcg gaggactgtg gaatcagcga ggaataggag agagaaatac
     1021 caagagagga ggagatttgg tgtcacaggt gtgaattctc acctaccttc cagtaaagat
     1081 gtgatcgcca caggagagtg agttgtatct tgccaggtgc tagctctgga cagcggctga
     1141 ttttgggctg gaaagctttt ctcgttctcc tccctgcaga tcactgtggg tcctgattcc
     1201 ttagaaatgc ctctggcagg gtggccagac taagggaatc tctgaggaag ctcttccagg
     1261 tgctgccaca gcttctaccc tccatggtgg ggctacttaa tgcccttaga tttcaggctt
     1321 gactttcctc tgttgctaag gataaaagct cattatttta tttatttaaa
//
LOCUS       XM_032620977            1214 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ER membrane protein complex subunit 4
            (EMC4), transcript variant X1, mRNA.
ACCESSION   XM_032620977
VERSION     XM_032620977.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1214
                     /gene="EMC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 mRNAs, 19 long SRA reads, 8
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748113"
     CDS             125..676
                     /gene="EMC4"
                     /codon_start=1
                     /product="ER membrane protein complex subunit 4 isoform
                     X1"
                     /protein_id="XP_032476868.1"
                     /db_xref="GeneID:116748113"
                     /translation="MTAQGSLVANRGRRFKWAIELSGPGGGSRSRSDRGGGQGDSLYP
                     VGYLDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMV
                     CMMAWRPIQALMAISATFKMLESSSQKFLQGLVYLIGNLMGLALAVYKCQSMGLLPTH
                     ASDWLAFIEPPERMEFSGGGLLL"
     misc_feature    290..634
                     /gene="EMC4"
                     /note="Protein of unknown function (DUF1077); Region:
                     DUF1077; pfam06417"
                     /db_xref="CDD:461902"
ORIGIN      
        1 gtctatagtt acgcgccgga cgtggacttg cagagtgaac cccagaagtc gcggacgctg
       61 ttgggcttga ggcctggctg agctttggtc gggagctctg cagctttggg aggcggccgt
      121 tgccatgacg gcccagggga gcctggtggc caaccgaggc cggcgcttca agtgggcgat
      181 tgagctgagc ggacctggag gaggcagcag gagccgaagt gaccggggcg gtggccaggg
      241 agactcgctg tacccagttg gttacttgga caagcaagtg cctgatacca gcgtgcaaga
      301 gacagaccgg atcctagtgg agaagcgctg ctgggacatt gccttgggtc ccctgaaaca
      361 gattcccatg aacctcttca tcatgtacat ggcaggcaat actatctcca tcttccctac
      421 tatgatggtg tgtatgatgg cttggcgacc cattcaggca cttatggcca tttcagccac
      481 tttcaagatg ctagaaagtt caagccagaa gtttcttcag ggtttggtgt atctcattgg
      541 gaaccttatg ggtttggcat tggctgttta taagtgccag tcaatgggac tcttgcctac
      601 acatgcatca gattggttag ccttcattga gccccctgag aggatggagt tcagtggagg
      661 aggactgctt ttgtgaacct gagaaagaag cacgtggtgc ctatgtatct ggagctcatt
      721 tacagccgcc ttcatgccca gtggctcctc ctcagcatac caacctttaa cattatcact
      781 cactgaaaag gaccaaaagg tctcttttct ccatggtgaa gagacaaatc ctagaaagac
      841 aatgtacata tcactacaaa cacacaaaaa aacgatacca caactcttga ctgaaaataa
      901 ggtagaaaac tttatttgtt tccagtagag agcaaaacaa atgaaaccat aactctgtaa
      961 acaaaagagt ggttgctgat aaatcaagag ctacagcagc atctcctttt aataaattaa
     1021 atggttgaga acagtgcttt aaaaaaaagt tgcacaagtt tcccttaaat ctatcctcct
     1081 taatatttca cttctgtcta acacaagctg ggacataaaa attctgttgg agatactaga
     1141 gaaatgggag aaactaatgc tgaattcaga ttatatatga tgaaaagaaa aataaaccag
     1201 acccaaaaag caca
//
LOCUS       XM_032620985            1036 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus ER membrane protein complex subunit 4
            (EMC4), transcript variant X2, mRNA.
ACCESSION   XM_032620985
VERSION     XM_032620985.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..1036
                     /gene="EMC4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 long SRA reads, 2 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:116748113"
     CDS             103..603
                     /gene="EMC4"
                     /codon_start=1
                     /product="ER membrane protein complex subunit 4 isoform
                     X2"
                     /protein_id="XP_032476876.1"
                     /db_xref="GeneID:116748113"
                     /translation="MTAQGSLVANRGRRFKWAIELSGPGGGSRSRSDRGGGQGDSLYP
                     VGYLDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMV
                     CMMAWRPIQALMAISAKDGVQWRRTAFVNLRKKHVVPMYLELIYSRLHAQWLLLSIPT
                     FNIITH"
     misc_feature    268..>456
                     /gene="EMC4"
                     /note="Protein of unknown function (DUF1077); Region:
                     DUF1077; pfam06417"
                     /db_xref="CDD:461902"
ORIGIN      
        1 tggacttgca gagtgaaccc cagaagtcgc ggacgctgtt gggcttgagg cctggctgag
       61 ctttggtcgg gagctctgca gctttgggag gcggccgttg ccatgacggc ccaggggagc
      121 ctggtggcca accgaggccg gcgcttcaag tgggcgattg agctgagcgg acctggagga
      181 ggcagcagga gccgaagtga ccggggcggt ggccagggag actcgctgta cccagttggt
      241 tacttggaca agcaagtgcc tgataccagc gtgcaagaga cagaccggat cctagtggag
      301 aagcgctgct gggacattgc cttgggtccc ctgaaacaga ttcccatgaa cctcttcatc
      361 atgtacatgg caggcaatac tatctccatc ttccctacta tgatggtgtg tatgatggct
      421 tggcgaccca ttcaggcact tatggccatt tcagccaagg atggagttca gtggaggagg
      481 actgcttttg tgaacctgag aaagaagcac gtggtgccta tgtatctgga gctcatttac
      541 agccgccttc atgcccagtg gctcctcctc agcataccaa cctttaacat tatcactcac
      601 tgaaaaggac caaaaggtct cttttctcca tggtgaagag acaaatccta gaaagacaat
      661 gtacatatca ctacaaacac acaaaaaaac gataccacaa ctcttgactg aaaataaggt
      721 agaaaacttt atttgtttcc agtagagagc aaaacaaatg aaaccataac tctgtaaaca
      781 aaagagtggt tgctgataaa tcaagagcta cagcagcatc tccttttaat aaattaaatg
      841 gttgagaaca gtgctttaaa aaaaagttgc acaagtttcc cttaaatcta tcctccttaa
      901 tatttcactt ctgtctaaca caagctggga cataaaaatt ctgttggaga tactagagaa
      961 atgggagaaa ctaatgctga attcagatta tatatgatga aaagaaaaat aaaccagacc
     1021 caaaaagcac ataaaa
//
LOCUS       XM_032620994            7115 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X1, mRNA.
ACCESSION   XM_032620994
VERSION     XM_032620994.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7115
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7115
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             165..5972
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X1"
                     /protein_id="XP_032476885.1"
                     /db_xref="GeneID:116748129"
                     /translation="MEENESQKCEPCLPYSADSRQMQEQGKSNSQVASLEDAECRRTK
                     ERLSNGNSRVSASKSSRNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYP
                     HHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPF
                     SRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAF
                     PQQLTMKMLESPSVAIYIKDESRNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKT
                     VNGDVRMQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGG
                     TRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGF
                     YADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSL
                     YRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSR
                     QAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRETRERMQAM
                     EKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTAANKNHTDGAGTPQVSGGKPLGA
                     LESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQLQQMRQLQLQNQELLRALMRKAE
                     QEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHEEEKVVRKLCDLEDFVEDLKKDSA
                     LASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPH
                     RLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAPAAQYVVMEKATAAEVLKAQEEAP
                     RASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGPGPH
                     PASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEIHSVSAKNRAVSIEKAERKWEEKR
                     QNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPQPKGDAPVDKLEPSEDSPNSE
                     QDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDVVYTSRKENATTKASSEDAGPSL
                     QARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEGDKIMAELQAFQKCSFMDVNSNS
                     HAEQSRADSHLKDTRPGATALPKEKKNLEFFHEDVRKSDVEYENGPQMESWKVTAGAS
                     IPSDHPKWERGMENSISDAARTSEYKTDILMKESSISTKSLLRDGRNYSQKNVSRVNS
                     SFSGVSSLEDEINKGPKISGLPYPVCDTENQKMNYGKTKGVIQQGQENTDKCHLPSPT
                     RSTESTIRDVKTQDREVPLTEFGQVVLRPKGARPANVTPDEDGESTAGSPTEESATTD
                     SIAFMITKTAVQVLSSGEVRDIVSKQGQDVQTVNIDAKKETASQQEGTDSEEPVVCLD
                     KKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMTEEKIEEEEENGDTAVQSNISQ
                     KLPKEGASGNLGAGREAESEFQPHFLSAETGISGGQEVTRTEQSKFNPADSPSSESQG
                     DTTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGTLKQH
                     REAKRFEISGSRSEDTPKGMLRRLEQPSLESTAPISRTDEIRKNTYRTLDSLEQTIKQ
                     LENTISEMSPKALVDTSCSSNRESVASSSHVAQEACPQSLLVLDEAPTALEPPSSVPS
                     ASRKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCK
                     PTFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAP
                     SASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQNGRAAPPSFSSSLPPPASPASLNQ
                     GAKSIRTIHTPSLTSYKAQSGSSSKATQSTAKETS"
     misc_feature    726..>962
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 gagagagact ttgtaccgga gtggagagta gtttggggtg gggtttcgca ccgttccctc
       61 ctccccaccc ccgggccccc ttccaggcgc tttctgggag ctttttcaga actgcgctct
      121 gaagtttaaa gatcagcgaa gggcctgggc cgtaggcagg gacaatggaa gaaaatgaaa
      181 gccagaaatg tgagccgtgc cttccttact cagcagacag cagacagatg caggaacaag
      241 gaaagagcaa ttcgcaggta gcatccttag aagatgcaga atgtcgcaga accaaggaac
      301 gcctttctaa tggaaacagt cgcgtttcag cttccaaatc ttcccgaaac atcccaagga
      361 gacacactct aggtggacct cgaagttcca aagaaatact gggaatgcaa acatcagaga
      421 tggatcgtaa gagagaagct ttcctagaac atctaaagca gaaatacccc catcatgcca
      481 cagccatcat gggccaccaa gagaggctga gagaccagac aagaagcccc aaactgtctc
      541 acagtcctca gcctcccaac ttgggtgacc cagtagagca tttatcagag gcatctggag
      601 attctttgga agccatgtct gagggagaaa ctccaagtcc tttttccaga ggcagccgga
      661 ctcgagcgag ccttccagtg gtgaggtcga ccaaccagac gaaagaaaga tctctggggg
      721 ttctttatct ccagtacgga gatgaaacca agcagctcag gatgccgaat gaaattacaa
      781 gtgcagacac aatccgtgct ctcttcgtaa gtgcctttcc acagcagctc accatgaaaa
      841 tgctggagtc gcccagtgtc gccatttaca tcaaagatga aagcagaaat gtctattatg
      901 agttaagtga tgtcaggaac attcaggaca gatcccttct caaagtgtac aacaaggatc
      961 ctgcccatgc attcaaccac acaccgaaaa ctgtgaacgg agacgtgagg atgcagagag
     1021 aaatcgttta tgcaagagga gatggccctg gtgcctctcg acctggaccc acaactcttc
     1081 taccccacgc cattccaaat tctccaccgt ccactcctgt gccacattcc atgcctccct
     1141 ctccatccag aatcccttac ggaggcaccc ggccgatggt cgttcctggt aacgccacca
     1201 tccccaggga cagactctcc agcctgccgg tctccagatc catctctccc agccccagcg
     1261 ccatcttgga aagaagagac gtgaagccag atgaagacat gagctccaag agcctcgcga
     1321 tgtaccgaaa cgagggtttc tacgccgatc cttaccttta tcacgagggg aggatgagca
     1381 tagcctcttc gcacggcggg cacccactgg atctccccga ccacatcatc gggtatcacc
     1441 gcgctgcagt tcgttcagcc agtgcttact gcagcccttc tttgcaagcg gaaatgcaca
     1501 tggagcagtc actgtacaga cagaagtcaa ggaagtatcc agagagcctc ttgcctactc
     1561 tgggctccaa aacgcccccg gcctctcctc accgagtcag tgacctgagg atggtggaga
     1621 tgcacggtct ccataacgcc cacgggccct cccacaccat gcagccagac cgggtctcac
     1681 ccagccgcca ggccttcaaa aaggagcccg gcaccttggt gtacattgag aagccacgga
     1741 cgactccagg attagccgga atggtggacc tcggccctcc tctagttgag aagcaagtgt
     1801 ttgcttatag cacggctacg atacccaaag acagagagac cagagagagg atgcaagcca
     1861 tggagaaaca gattgccagt ttaactggcc ttgttcagtc tgcgcttttt aaagggcccc
     1921 ttacaagtaa tagcaaagat gcatctagcg agaaaatgat gaaaaccgca gccaataaga
     1981 accacacaga tggtgcagga actccccagg tttccggcgg gaagcctctt ggcgccctgg
     2041 agtcctcggg gccacgcagc cagctcccgc ctgctggcac ctccgccgcc cacatgagcc
     2101 tgctcgacat gaagaggagt gtggccgaac tcaggctcca gctgcagcag atgcgacagc
     2161 tccagctgca gaaccaggag ctgctgaggg cgctgatgag gaaggctgag caggaaatca
     2221 acagcaaggt gattgaaacg ttgaagagac tggaggaccc tgtgcagcga cagcgggtcc
     2281 tggtggaaca ggagaggcag aagtacctgc acgaggagga aaaggttgtc cggaagttgt
     2341 gtgacctgga agacttcgtt gaagatttaa agaaggactc tgccttggcc agccgcgtgg
     2401 ttactctaaa agatgtggaa gacggggctt tcctcctgca ccaggtggga gaggcagtag
     2461 cttccctgaa aggagaattt ccaaccttac aaaacaagat gcgagccatc ctgcgcatag
     2521 aagtggaggc cgtgcggttt ctgaaggagg agccgcacag gctggacagt ctcctacaga
     2581 gagtgcgtgg catgaccgac gccctgacca cgctgcgcag gcatgtcact gatgggctct
     2641 tgaagggcac agatgcggcc ccggccgcac agtatgtcgt gatggaaaag gccacggccg
     2701 cagaagtcct gaaggcccag gaggaggctc cccgcgcctc gggccagccc ctccccggtg
     2761 cgggcgtccc cggcgacgtg aaatcggaag tggtaccctt gacggttcac cacgctcaga
     2821 gctctcctgt ggtcatccag ccgtcccagc tctcctccgc gctgctgaac cctgcccagc
     2881 acttgccagg ggggcccggg cctcacccgg ccagccctcc cgctgtcaca caggaggtga
     2941 cctcagctct gcagtccccg cagatgcccg ggaatggttc ctccatgcag agcctgttca
     3001 tggacgaaat ccacagtgtg agtgccaaga acagggcagt gtctatcgag aaagcagaaa
     3061 ggaaatggga agagaaaagg caaaatctgg accactataa cggaaaagag tttgagaagc
     3121 tcctagaaga agcccaggcc aatattatga agtcaattcc aaacctggag atgccgccag
     3181 cctcgggccc acagccaaag ggcgatgctc cagtggacaa gctagaacct tcagaagact
     3241 ctccaaattc agaacaggac ttggacaagc tgggggctaa gtccccgcct cgtcctcccc
     3301 cacctccacg gaggagctat ctgccaggat cggggctcac caccacgagg tccggcgatg
     3361 tggtctacac cagcaggaag gagaatgcca ccacaaaggc aagcagtgaa gatgctggac
     3421 caagcctgca ggctagagcc acaaagtgtc cagcagagga gcctgcttca gcctgggccc
     3481 cgtcaccacc acctgtcact acttcctcct tcaaggatga ggaggaagaa gaaggagaca
     3541 aaatcatggc agaactccag gcattccaga agtgttcctt tatggatgta aattcaaaca
     3601 gtcacgctga gcagtcccgg gctgacagtc accttaaaga cactaggccg ggggccacag
     3661 ccctccccaa ggagaagaag aatttggaat ttttccacga agacgtacgg aaatctgatg
     3721 ttgaatatga aaatggcccc caaatggaat cctggaaggt taccgcaggg gcttccatac
     3781 ctagtgacca tcctaagtgg gaaagaggaa tggagaatag tatttctgat gcagcaagaa
     3841 catcagaata caaaactgac atcttaatga aggaaagttc catatccact aagagtttac
     3901 ttagagacgg tagaaactat tcccagaaaa acgtgtccag ggtcaattct agtttctctg
     3961 gcgttagttc cttagaagat gaaatcaaca aaggacctaa aatctcaggg ctgccgtacc
     4021 ctgtatgtga cactgagaat cagaagatga attatgggaa gacaaagggg gtgatccagc
     4081 aaggacaaga aaatacagat aagtgtcacc ttccctctcc cactagatca accgaatcga
     4141 ctattcgtga tgtcaaaact caagaccgag aggttccctt gacagagttt ggccaagttg
     4201 tcctaagacc gaagggagcc aggcccgcta acgtgacgcc tgatgaggat ggagagtcaa
     4261 cggcaggctc tcccaccgag gagagtgcaa ccaccgacag cattgccttc atgatcacca
     4321 aaaccgcggt ccaagttctc tccagcgggg aggtccgcga catagtgagc aaacaggggc
     4381 aagatgtaca gacggtcaac attgacgcca aaaaagagac agcttcccag caagaaggca
     4441 ctgacagcga agagccggtc gtgtgcctgg acaagaaacc cgtgatcatc atttttgatg
     4501 aacccatgga catccggtcc gcatacaaga gactttcaac catatttgag gaatgcgacg
     4561 aggaactgga gagaatgatg acagaggaga agatagagga agaggaggag aatggagata
     4621 ctgcggtcca gagtaacatc tcccaaaagc ttcctaagga gggggcctcg ggcaacctcg
     4681 gagcagggcg ggaggctgag agtgaattcc agccgcactt cctttcagcg gagaccggaa
     4741 tatcaggagg acaggaagtg actagaaccg agcagagcaa gttcaaccca gccgattctc
     4801 caagttcaga aagccagggc gacacgaccg acgaccagtt tgaaagcccc aagaaaaagt
     4861 tcaaattcaa attcccgaaa aagcagctcg ccgctcttac gcaagccatt cgcacgggaa
     4921 ccaagacggg gaagaagacg ttgcaggtgg tggtctatga agaggaggaa gaggacggca
     4981 ctttgaagca gcacagagaa gccaagcgct tcgagatcag cgggtctcga tccgaagaca
     5041 ccccgaaagg tatgctcagg agactagagc agcccagtct ggagagcaca gctccgattt
     5101 cgagaactga tgaaatcaga aaaaatacct acaggacgtt ggacagcctg gagcagacca
     5161 tcaaacagct ggaaaatacg atcagtgaga tgagtcccaa agccctagtt gatacctcgt
     5221 gttcctccaa cagagagtct gttgcaagct catcccacgt ggcccaggag gcctgtcccc
     5281 agtccttgct agtcctggat gaagctccca ctgccctaga gcccccctcg tctgtacctt
     5341 cagcttcacg taagggcccc acgggaaccc ctcagacgag caggatgccg atccccatga
     5401 gttccaagaa cagacccgga agcctggaca aacctggcaa gcagtccaaa ctgcaggacc
     5461 cccgccaata tcgtcaggct aatggaagtg ctaagaaagc tggtggggac tgtaagccta
     5521 ctttcccctc cttacctgct tctaagattc cagccctttc tcccagctct gggaaaagca
     5581 gttctctgcc ttcttctagt ggtgacagct ctaacttccc taatccacct gctactaaac
     5641 catcggttcc ttctaaccct ctcagccccc aaacaggacg atctgctccc tctgcctccc
     5701 tcatcccctc tgtctctaat ggctccttga agtttcagag ccccactcat acaggtaaag
     5761 gtcaccatct ctcattctca ctgcagactc agaatggccg agcagcccct ccttccttct
     5821 cctcctccct gcccccccct gcctccccag cttcactgaa tcaaggtgcc aagagcatca
     5881 gaaccatcca tactcctagc ctcaccagct acaaggcaca gagcggaagt tcaagcaaag
     5941 ccacccagtc cacagcaaag gaaacctctt aaaggccaaa tcctattagg cacgagtcgg
     6001 agttgcattt aagaacaaaa aaatttttaa cagtcttcga caagtgtttt cacaagagaa
     6061 tgtaacatat cgctgtactg tttgaggttt aatgctaagt atgtgctaaa tactggatta
     6121 atagatttca gtaaagcttg tttgtttttt tactttgtcg ctgttatcat tacatagtgt
     6181 ttactgtctc tattcaatac ctgttcaatg aagtaagcat gtgttaccaa aagagagtat
     6241 ggcaggagag aagggtgtgg tgagacaaga aaaaaatgta tgaagcatgt aaaacatgta
     6301 tgattccaga attttagtat gttttgtata aaaatatttt tcattacgga gactagacgt
     6361 gaacagagaa atacacaagt gtgactatac aaattgtaaa acagatacta taatatttcc
     6421 ttttatttta gtgttattta gctttattac agatttctat ttttgtcaaa acttcatggt
     6481 tcctttcgag atcttttttg ccaaaacatt ttgatactgt agcattgtac atttgaaagt
     6541 agcgtgctag acaataagcc aatgaacttc tacacaagcc aacgcagagg cacatgtaga
     6601 aggcaatgat caaccctact gcactgccat gaaaattatg tataataatt tgccggccca
     6661 agcaagctag ttttgttctg tttctttctt ttttctcttt tctaacatat tgggattctc
     6721 tggttgtttt ctttgcagta tctaaatcct tcctttgttt tctgagacct ggtaacccac
     6781 acgattgcat tgtggatttt agaatgtaca cttctgtacg gttctgtaaa ctgaccaatt
     6841 tttgtaaata tataaataga ccaaaaatac tgtatgtgac agcacataga gtagctttcc
     6901 cacaccaaag ttaattttta tgcatgcttt aaaaatatat cttgggatgg gcagaaatgg
     6961 aacttcctgg acatttttaa aaagcaacaa gtttgcacag ctagagtgtt tttgtaaata
     7021 aatgtatttg tataacacag ttatgtaata tacagaacta taagcagaga ctttgcaaaa
     7081 ctaaataaag ggctgcatgc ttattatttt ttgta
//
LOCUS       XM_032621005            7114 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X2, mRNA.
ACCESSION   XM_032621005
VERSION     XM_032621005.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7114
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7114
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             167..5971
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X2"
                     /protein_id="XP_032476896.1"
                     /db_xref="GeneID:116748129"
                     /translation="MEENESQKCEPCLPYSADSRQMQEQGKSNSQVASLEDAECRRTK
                     ERLSNGNSRVSASKSSRNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYP
                     HHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPF
                     SRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAF
                     PQQLTMKMLESPSVAIYIKDESRNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKT
                     VNGDVRMQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGG
                     TRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGF
                     YADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSL
                     YRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSR
                     QAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRETRERMQAM
                     EKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTAANKNHTDGAGTPQVSGGKPLGA
                     LESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQLQQMRQLQLQNQELLRALMRKAE
                     QEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHEEEKVVRKLCDLEDFVEDLKKDSA
                     LASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPH
                     RLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAPAAQYVVMEKATAAEVLKAQEEAP
                     RASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGPGPH
                     PASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEIHSVSAKNRAVSIEKAERKWEEKR
                     QNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPQPKGDAPVDKLEPSDSPNSEQ
                     DLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDVVYTSRKENATTKASSEDAGPSLQ
                     ARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEGDKIMAELQAFQKCSFMDVNSNSH
                     AEQSRADSHLKDTRPGATALPKEKKNLEFFHEDVRKSDVEYENGPQMESWKVTAGASI
                     PSDHPKWERGMENSISDAARTSEYKTDILMKESSISTKSLLRDGRNYSQKNVSRVNSS
                     FSGVSSLEDEINKGPKISGLPYPVCDTENQKMNYGKTKGVIQQGQENTDKCHLPSPTR
                     STESTIRDVKTQDREVPLTEFGQVVLRPKGARPANVTPDEDGESTAGSPTEESATTDS
                     IAFMITKTAVQVLSSGEVRDIVSKQGQDVQTVNIDAKKETASQQEGTDSEEPVVCLDK
                     KPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMTEEKIEEEEENGDTAVQSNISQK
                     LPKEGASGNLGAGREAESEFQPHFLSAETGISGGQEVTRTEQSKFNPADSPSSESQGD
                     TTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGTLKQHR
                     EAKRFEISGSRSEDTPKGMLRRLEQPSLESTAPISRTDEIRKNTYRTLDSLEQTIKQL
                     ENTISEMSPKALVDTSCSSNRESVASSSHVAQEACPQSLLVLDEAPTALEPPSSVPSA
                     SRKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKP
                     TFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPS
                     ASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQNGRAAPPSFSSSLPPPASPASLNQG
                     AKSIRTIHTPSLTSYKAQSGSSSKATQSTAKETS"
     misc_feature    728..>964
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 gcgagagaga ctttgtaccg gagtggagag tagtttgggg tggggtttcg caccgttccc
       61 tcctccccac ccccgggccc ccttccaggc gctttctggg agctttttca gaactgcgct
      121 ctgaagttta aagatcagcg aagggcctgg gccgtaggca gggacaatgg aagaaaatga
      181 aagccagaaa tgtgagccgt gccttcctta ctcagcagac agcagacaga tgcaggaaca
      241 aggaaagagc aattcgcagg tagcatcctt agaagatgca gaatgtcgca gaaccaagga
      301 acgcctttct aatggaaaca gtcgcgtttc agcttccaaa tcttcccgaa acatcccaag
      361 gagacacact ctaggtggac ctcgaagttc caaagaaata ctgggaatgc aaacatcaga
      421 gatggatcgt aagagagaag ctttcctaga acatctaaag cagaaatacc cccatcatgc
      481 cacagccatc atgggccacc aagagaggct gagagaccag acaagaagcc ccaaactgtc
      541 tcacagtcct cagcctccca acttgggtga cccagtagag catttatcag aggcatctgg
      601 agattctttg gaagccatgt ctgagggaga aactccaagt cctttttcca gaggcagccg
      661 gactcgagcg agccttccag tggtgaggtc gaccaaccag acgaaagaaa gatctctggg
      721 ggttctttat ctccagtacg gagatgaaac caagcagctc aggatgccga atgaaattac
      781 aagtgcagac acaatccgtg ctctcttcgt aagtgccttt ccacagcagc tcaccatgaa
      841 aatgctggag tcgcccagtg tcgccattta catcaaagat gaaagcagaa atgtctatta
      901 tgagttaagt gatgtcagga acattcagga cagatccctt ctcaaagtgt acaacaagga
      961 tcctgcccat gcattcaacc acacaccgaa aactgtgaac ggagacgtga ggatgcagag
     1021 agaaatcgtt tatgcaagag gagatggccc tggtgcctct cgacctggac ccacaactct
     1081 tctaccccac gccattccaa attctccacc gtccactcct gtgccacatt ccatgcctcc
     1141 ctctccatcc agaatccctt acggaggcac ccggccgatg gtcgttcctg gtaacgccac
     1201 catccccagg gacagactct ccagcctgcc ggtctccaga tccatctctc ccagccccag
     1261 cgccatcttg gaaagaagag acgtgaagcc agatgaagac atgagctcca agagcctcgc
     1321 gatgtaccga aacgagggtt tctacgccga tccttacctt tatcacgagg ggaggatgag
     1381 catagcctct tcgcacggcg ggcacccact ggatctcccc gaccacatca tcgggtatca
     1441 ccgcgctgca gttcgttcag ccagtgctta ctgcagccct tctttgcaag cggaaatgca
     1501 catggagcag tcactgtaca gacagaagtc aaggaagtat ccagagagcc tcttgcctac
     1561 tctgggctcc aaaacgcccc cggcctctcc tcaccgagtc agtgacctga ggatggtgga
     1621 gatgcacggt ctccataacg cccacgggcc ctcccacacc atgcagccag accgggtctc
     1681 acccagccgc caggccttca aaaaggagcc cggcaccttg gtgtacattg agaagccacg
     1741 gacgactcca ggattagccg gaatggtgga cctcggccct cctctagttg agaagcaagt
     1801 gtttgcttat agcacggcta cgatacccaa agacagagag accagagaga ggatgcaagc
     1861 catggagaaa cagattgcca gtttaactgg ccttgttcag tctgcgcttt ttaaagggcc
     1921 ccttacaagt aatagcaaag atgcatctag cgagaaaatg atgaaaaccg cagccaataa
     1981 gaaccacaca gatggtgcag gaactcccca ggtttccggc gggaagcctc ttggcgccct
     2041 ggagtcctcg gggccacgca gccagctccc gcctgctggc acctccgccg cccacatgag
     2101 cctgctcgac atgaagagga gtgtggccga actcaggctc cagctgcagc agatgcgaca
     2161 gctccagctg cagaaccagg agctgctgag ggcgctgatg aggaaggctg agcaggaaat
     2221 caacagcaag gtgattgaaa cgttgaagag actggaggac cctgtgcagc gacagcgggt
     2281 cctggtggaa caggagaggc agaagtacct gcacgaggag gaaaaggttg tccggaagtt
     2341 gtgtgacctg gaagacttcg ttgaagattt aaagaaggac tctgccttgg ccagccgcgt
     2401 ggttactcta aaagatgtgg aagacggggc tttcctcctg caccaggtgg gagaggcagt
     2461 agcttccctg aaaggagaat ttccaacctt acaaaacaag atgcgagcca tcctgcgcat
     2521 agaagtggag gccgtgcggt ttctgaagga ggagccgcac aggctggaca gtctcctaca
     2581 gagagtgcgt ggcatgaccg acgccctgac cacgctgcgc aggcatgtca ctgatgggct
     2641 cttgaagggc acagatgcgg ccccggccgc acagtatgtc gtgatggaaa aggccacggc
     2701 cgcagaagtc ctgaaggccc aggaggaggc tccccgcgcc tcgggccagc ccctccccgg
     2761 tgcgggcgtc cccggcgacg tgaaatcgga agtggtaccc ttgacggttc accacgctca
     2821 gagctctcct gtggtcatcc agccgtccca gctctcctcc gcgctgctga accctgccca
     2881 gcacttgcca ggggggcccg ggcctcaccc ggccagccct cccgctgtca cacaggaggt
     2941 gacctcagct ctgcagtccc cgcagatgcc cgggaatggt tcctccatgc agagcctgtt
     3001 catggacgaa atccacagtg tgagtgccaa gaacagggca gtgtctatcg agaaagcaga
     3061 aaggaaatgg gaagagaaaa ggcaaaatct ggaccactat aacggaaaag agtttgagaa
     3121 gctcctagaa gaagcccagg ccaatattat gaagtcaatt ccaaacctgg agatgccgcc
     3181 agcctcgggc ccacagccaa agggcgatgc tccagtggac aagctagaac cttcagactc
     3241 tccaaattca gaacaggact tggacaagct gggggctaag tccccgcctc gtcctccccc
     3301 acctccacgg aggagctatc tgccaggatc ggggctcacc accacgaggt ccggcgatgt
     3361 ggtctacacc agcaggaagg agaatgccac cacaaaggca agcagtgaag atgctggacc
     3421 aagcctgcag gctagagcca caaagtgtcc agcagaggag cctgcttcag cctgggcccc
     3481 gtcaccacca cctgtcacta cttcctcctt caaggatgag gaggaagaag aaggagacaa
     3541 aatcatggca gaactccagg cattccagaa gtgttccttt atggatgtaa attcaaacag
     3601 tcacgctgag cagtcccggg ctgacagtca ccttaaagac actaggccgg gggccacagc
     3661 cctccccaag gagaagaaga atttggaatt tttccacgaa gacgtacgga aatctgatgt
     3721 tgaatatgaa aatggccccc aaatggaatc ctggaaggtt accgcagggg cttccatacc
     3781 tagtgaccat cctaagtggg aaagaggaat ggagaatagt atttctgatg cagcaagaac
     3841 atcagaatac aaaactgaca tcttaatgaa ggaaagttcc atatccacta agagtttact
     3901 tagagacggt agaaactatt cccagaaaaa cgtgtccagg gtcaattcta gtttctctgg
     3961 cgttagttcc ttagaagatg aaatcaacaa aggacctaaa atctcagggc tgccgtaccc
     4021 tgtatgtgac actgagaatc agaagatgaa ttatgggaag acaaaggggg tgatccagca
     4081 aggacaagaa aatacagata agtgtcacct tccctctccc actagatcaa ccgaatcgac
     4141 tattcgtgat gtcaaaactc aagaccgaga ggttcccttg acagagtttg gccaagttgt
     4201 cctaagaccg aagggagcca ggcccgctaa cgtgacgcct gatgaggatg gagagtcaac
     4261 ggcaggctct cccaccgagg agagtgcaac caccgacagc attgccttca tgatcaccaa
     4321 aaccgcggtc caagttctct ccagcgggga ggtccgcgac atagtgagca aacaggggca
     4381 agatgtacag acggtcaaca ttgacgccaa aaaagagaca gcttcccagc aagaaggcac
     4441 tgacagcgaa gagccggtcg tgtgcctgga caagaaaccc gtgatcatca tttttgatga
     4501 acccatggac atccggtccg catacaagag actttcaacc atatttgagg aatgcgacga
     4561 ggaactggag agaatgatga cagaggagaa gatagaggaa gaggaggaga atggagatac
     4621 tgcggtccag agtaacatct cccaaaagct tcctaaggag ggggcctcgg gcaacctcgg
     4681 agcagggcgg gaggctgaga gtgaattcca gccgcacttc ctttcagcgg agaccggaat
     4741 atcaggagga caggaagtga ctagaaccga gcagagcaag ttcaacccag ccgattctcc
     4801 aagttcagaa agccagggcg acacgaccga cgaccagttt gaaagcccca agaaaaagtt
     4861 caaattcaaa ttcccgaaaa agcagctcgc cgctcttacg caagccattc gcacgggaac
     4921 caagacgggg aagaagacgt tgcaggtggt ggtctatgaa gaggaggaag aggacggcac
     4981 tttgaagcag cacagagaag ccaagcgctt cgagatcagc gggtctcgat ccgaagacac
     5041 cccgaaaggt atgctcagga gactagagca gcccagtctg gagagcacag ctccgatttc
     5101 gagaactgat gaaatcagaa aaaataccta caggacgttg gacagcctgg agcagaccat
     5161 caaacagctg gaaaatacga tcagtgagat gagtcccaaa gccctagttg atacctcgtg
     5221 ttcctccaac agagagtctg ttgcaagctc atcccacgtg gcccaggagg cctgtcccca
     5281 gtccttgcta gtcctggatg aagctcccac tgccctagag cccccctcgt ctgtaccttc
     5341 agcttcacgt aagggcccca cgggaacccc tcagacgagc aggatgccga tccccatgag
     5401 ttccaagaac agacccggaa gcctggacaa acctggcaag cagtccaaac tgcaggaccc
     5461 ccgccaatat cgtcaggcta atggaagtgc taagaaagct ggtggggact gtaagcctac
     5521 tttcccctcc ttacctgctt ctaagattcc agccctttct cccagctctg ggaaaagcag
     5581 ttctctgcct tcttctagtg gtgacagctc taacttccct aatccacctg ctactaaacc
     5641 atcggttcct tctaaccctc tcagccccca aacaggacga tctgctccct ctgcctccct
     5701 catcccctct gtctctaatg gctccttgaa gtttcagagc cccactcata caggtaaagg
     5761 tcaccatctc tcattctcac tgcagactca gaatggccga gcagcccctc cttccttctc
     5821 ctcctccctg cccccccctg cctccccagc ttcactgaat caaggtgcca agagcatcag
     5881 aaccatccat actcctagcc tcaccagcta caaggcacag agcggaagtt caagcaaagc
     5941 cacccagtcc acagcaaagg aaacctctta aaggccaaat cctattaggc acgagtcgga
     6001 gttgcattta agaacaaaaa aatttttaac agtcttcgac aagtgttttc acaagagaat
     6061 gtaacatatc gctgtactgt ttgaggttta atgctaagta tgtgctaaat actggattaa
     6121 tagatttcag taaagcttgt ttgttttttt actttgtcgc tgttatcatt acatagtgtt
     6181 tactgtctct attcaatacc tgttcaatga agtaagcatg tgttaccaaa agagagtatg
     6241 gcaggagaga agggtgtggt gagacaagaa aaaaatgtat gaagcatgta aaacatgtat
     6301 gattccagaa ttttagtatg ttttgtataa aaatattttt cattacggag actagacgtg
     6361 aacagagaaa tacacaagtg tgactataca aattgtaaaa cagatactat aatatttcct
     6421 tttattttag tgttatttag ctttattaca gatttctatt tttgtcaaaa cttcatggtt
     6481 cctttcgaga tcttttttgc caaaacattt tgatactgta gcattgtaca tttgaaagta
     6541 gcgtgctaga caataagcca atgaacttct acacaagcca acgcagaggc acatgtagaa
     6601 ggcaatgatc aaccctactg cactgccatg aaaattatgt ataataattt gccggcccaa
     6661 gcaagctagt tttgttctgt ttctttcttt tttctctttt ctaacatatt gggattctct
     6721 ggttgttttc tttgcagtat ctaaatcctt cctttgtttt ctgagacctg gtaacccaca
     6781 cgattgcatt gtggatttta gaatgtacac ttctgtacgg ttctgtaaac tgaccaattt
     6841 ttgtaaatat ataaatagac caaaaatact gtatgtgaca gcacatagag tagctttccc
     6901 acaccaaagt taatttttat gcatgcttta aaaatatatc ttgggatggg cagaaatgga
     6961 acttcctgga catttttaaa aagcaacaag tttgcacagc tagagtgttt ttgtaaataa
     7021 atgtatttgt ataacacagt tatgtaatat acagaactat aagcagagac tttgcaaaac
     7081 taaataaagg gctgcatgct tattattttt tgta
//
LOCUS       XM_032621013            7083 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X3, mRNA.
ACCESSION   XM_032621013
VERSION     XM_032621013.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7083
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7083
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             166..5940
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X3"
                     /protein_id="XP_032476904.1"
                     /db_xref="GeneID:116748129"
                     /translation="MEENESQKCEPCLPYSADSRQMQEQGKSNSQVASLEDAECRRTK
                     ERLSNGNSRVSASKSSRNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYP
                     HHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPF
                     SRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAF
                     PQQLTMKMLESPSVAIYIKDESRNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKT
                     VNGDVRMQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGG
                     TRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGF
                     YADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSL
                     YRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSR
                     QAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRETRERMQAM
                     EKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTAANKNHTDGAGTPQVSGGKPLGA
                     LESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQLQQMRQLQLQNQELLRALMRKAE
                     QEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHEEEKVVRKLCDLEDFVEDLKKDSA
                     LASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPH
                     RLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAPAAQYVVMEKATAAEVLKAQEEAP
                     RASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGPGPH
                     PASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEIHSKAERKWEEKRQNLDHYNGKEF
                     EKLLEEAQANIMKSIPNLEMPPASGPQPKGDAPVDKLEPSEDSPNSEQDLDKLGAKSP
                     PRPPPPPRRSYLPGSGLTTTRSGDVVYTSRKENATTKASSEDAGPSLQARATKCPAEE
                     PASAWAPSPPPVTTSSFKDEEEEEGDKIMAELQAFQKCSFMDVNSNSHAEQSRADSHL
                     KDTRPGATALPKEKKNLEFFHEDVRKSDVEYENGPQMESWKVTAGASIPSDHPKWERG
                     MENSISDAARTSEYKTDILMKESSISTKSLLRDGRNYSQKNVSRVNSSFSGVSSLEDE
                     INKGPKISGLPYPVCDTENQKMNYGKTKGVIQQGQENTDKCHLPSPTRSTESTIRDVK
                     TQDREVPLTEFGQVVLRPKGARPANVTPDEDGESTAGSPTEESATTDSIAFMITKTAV
                     QVLSSGEVRDIVSKQGQDVQTVNIDAKKETASQQEGTDSEEPVVCLDKKPVIIIFDEP
                     MDIRSAYKRLSTIFEECDEELERMMTEEKIEEEEENGDTAVQSNISQKLPKEGASGNL
                     GAGREAESEFQPHFLSAETGISGGQEVTRTEQSKFNPADSPSSESQGDTTDDQFESPK
                     KKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGTLKQHREAKRFEISGS
                     RSEDTPKGMLRRLEQPSLESTAPISRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPK
                     ALVDTSCSSNRESVASSSHVAQEACPQSLLVLDEAPTALEPPSSVPSASRKGPTGTPQ
                     TSRMPIPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPTFPSLPASKI
                     PALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNG
                     SLKFQSPTHTGKGHHLSFSLQTQNGRAAPPSFSSSLPPPASPASLNQGAKSIRTIHTP
                     SLTSYKAQSGSSSKATQSTAKETS"
     misc_feature    727..>963
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 cgagagagac tttgtaccgg agtggagagt agtttggggt ggggtttcgc accgttccct
       61 cctccccacc cccgggcccc cttccaggcg ctttctggga gctttttcag aactgcgctc
      121 tgaagtttaa agatcagcga agggcctggg ccgtaggcag ggacaatgga agaaaatgaa
      181 agccagaaat gtgagccgtg ccttccttac tcagcagaca gcagacagat gcaggaacaa
      241 ggaaagagca attcgcaggt agcatcctta gaagatgcag aatgtcgcag aaccaaggaa
      301 cgcctttcta atggaaacag tcgcgtttca gcttccaaat cttcccgaaa catcccaagg
      361 agacacactc taggtggacc tcgaagttcc aaagaaatac tgggaatgca aacatcagag
      421 atggatcgta agagagaagc tttcctagaa catctaaagc agaaataccc ccatcatgcc
      481 acagccatca tgggccacca agagaggctg agagaccaga caagaagccc caaactgtct
      541 cacagtcctc agcctcccaa cttgggtgac ccagtagagc atttatcaga ggcatctgga
      601 gattctttgg aagccatgtc tgagggagaa actccaagtc ctttttccag aggcagccgg
      661 actcgagcga gccttccagt ggtgaggtcg accaaccaga cgaaagaaag atctctgggg
      721 gttctttatc tccagtacgg agatgaaacc aagcagctca ggatgccgaa tgaaattaca
      781 agtgcagaca caatccgtgc tctcttcgta agtgcctttc cacagcagct caccatgaaa
      841 atgctggagt cgcccagtgt cgccatttac atcaaagatg aaagcagaaa tgtctattat
      901 gagttaagtg atgtcaggaa cattcaggac agatcccttc tcaaagtgta caacaaggat
      961 cctgcccatg cattcaacca cacaccgaaa actgtgaacg gagacgtgag gatgcagaga
     1021 gaaatcgttt atgcaagagg agatggccct ggtgcctctc gacctggacc cacaactctt
     1081 ctaccccacg ccattccaaa ttctccaccg tccactcctg tgccacattc catgcctccc
     1141 tctccatcca gaatccctta cggaggcacc cggccgatgg tcgttcctgg taacgccacc
     1201 atccccaggg acagactctc cagcctgccg gtctccagat ccatctctcc cagccccagc
     1261 gccatcttgg aaagaagaga cgtgaagcca gatgaagaca tgagctccaa gagcctcgcg
     1321 atgtaccgaa acgagggttt ctacgccgat ccttaccttt atcacgaggg gaggatgagc
     1381 atagcctctt cgcacggcgg gcacccactg gatctccccg accacatcat cgggtatcac
     1441 cgcgctgcag ttcgttcagc cagtgcttac tgcagccctt ctttgcaagc ggaaatgcac
     1501 atggagcagt cactgtacag acagaagtca aggaagtatc cagagagcct cttgcctact
     1561 ctgggctcca aaacgccccc ggcctctcct caccgagtca gtgacctgag gatggtggag
     1621 atgcacggtc tccataacgc ccacgggccc tcccacacca tgcagccaga ccgggtctca
     1681 cccagccgcc aggccttcaa aaaggagccc ggcaccttgg tgtacattga gaagccacgg
     1741 acgactccag gattagccgg aatggtggac ctcggccctc ctctagttga gaagcaagtg
     1801 tttgcttata gcacggctac gatacccaaa gacagagaga ccagagagag gatgcaagcc
     1861 atggagaaac agattgccag tttaactggc cttgttcagt ctgcgctttt taaagggccc
     1921 cttacaagta atagcaaaga tgcatctagc gagaaaatga tgaaaaccgc agccaataag
     1981 aaccacacag atggtgcagg aactccccag gtttccggcg ggaagcctct tggcgccctg
     2041 gagtcctcgg ggccacgcag ccagctcccg cctgctggca cctccgccgc ccacatgagc
     2101 ctgctcgaca tgaagaggag tgtggccgaa ctcaggctcc agctgcagca gatgcgacag
     2161 ctccagctgc agaaccagga gctgctgagg gcgctgatga ggaaggctga gcaggaaatc
     2221 aacagcaagg tgattgaaac gttgaagaga ctggaggacc ctgtgcagcg acagcgggtc
     2281 ctggtggaac aggagaggca gaagtacctg cacgaggagg aaaaggttgt ccggaagttg
     2341 tgtgacctgg aagacttcgt tgaagattta aagaaggact ctgccttggc cagccgcgtg
     2401 gttactctaa aagatgtgga agacggggct ttcctcctgc accaggtggg agaggcagta
     2461 gcttccctga aaggagaatt tccaacctta caaaacaaga tgcgagccat cctgcgcata
     2521 gaagtggagg ccgtgcggtt tctgaaggag gagccgcaca ggctggacag tctcctacag
     2581 agagtgcgtg gcatgaccga cgccctgacc acgctgcgca ggcatgtcac tgatgggctc
     2641 ttgaagggca cagatgcggc cccggccgca cagtatgtcg tgatggaaaa ggccacggcc
     2701 gcagaagtcc tgaaggccca ggaggaggct ccccgcgcct cgggccagcc cctccccggt
     2761 gcgggcgtcc ccggcgacgt gaaatcggaa gtggtaccct tgacggttca ccacgctcag
     2821 agctctcctg tggtcatcca gccgtcccag ctctcctccg cgctgctgaa ccctgcccag
     2881 cacttgccag gggggcccgg gcctcacccg gccagccctc ccgctgtcac acaggaggtg
     2941 acctcagctc tgcagtcccc gcagatgccc gggaatggtt cctccatgca gagcctgttc
     3001 atggacgaaa tccacagtaa agcagaaagg aaatgggaag agaaaaggca aaatctggac
     3061 cactataacg gaaaagagtt tgagaagctc ctagaagaag cccaggccaa tattatgaag
     3121 tcaattccaa acctggagat gccgccagcc tcgggcccac agccaaaggg cgatgctcca
     3181 gtggacaagc tagaaccttc agaagactct ccaaattcag aacaggactt ggacaagctg
     3241 ggggctaagt ccccgcctcg tcctccccca cctccacgga ggagctatct gccaggatcg
     3301 gggctcacca ccacgaggtc cggcgatgtg gtctacacca gcaggaagga gaatgccacc
     3361 acaaaggcaa gcagtgaaga tgctggacca agcctgcagg ctagagccac aaagtgtcca
     3421 gcagaggagc ctgcttcagc ctgggccccg tcaccaccac ctgtcactac ttcctccttc
     3481 aaggatgagg aggaagaaga aggagacaaa atcatggcag aactccaggc attccagaag
     3541 tgttccttta tggatgtaaa ttcaaacagt cacgctgagc agtcccgggc tgacagtcac
     3601 cttaaagaca ctaggccggg ggccacagcc ctccccaagg agaagaagaa tttggaattt
     3661 ttccacgaag acgtacggaa atctgatgtt gaatatgaaa atggccccca aatggaatcc
     3721 tggaaggtta ccgcaggggc ttccatacct agtgaccatc ctaagtggga aagaggaatg
     3781 gagaatagta tttctgatgc agcaagaaca tcagaataca aaactgacat cttaatgaag
     3841 gaaagttcca tatccactaa gagtttactt agagacggta gaaactattc ccagaaaaac
     3901 gtgtccaggg tcaattctag tttctctggc gttagttcct tagaagatga aatcaacaaa
     3961 ggacctaaaa tctcagggct gccgtaccct gtatgtgaca ctgagaatca gaagatgaat
     4021 tatgggaaga caaagggggt gatccagcaa ggacaagaaa atacagataa gtgtcacctt
     4081 ccctctccca ctagatcaac cgaatcgact attcgtgatg tcaaaactca agaccgagag
     4141 gttcccttga cagagtttgg ccaagttgtc ctaagaccga agggagccag gcccgctaac
     4201 gtgacgcctg atgaggatgg agagtcaacg gcaggctctc ccaccgagga gagtgcaacc
     4261 accgacagca ttgccttcat gatcaccaaa accgcggtcc aagttctctc cagcggggag
     4321 gtccgcgaca tagtgagcaa acaggggcaa gatgtacaga cggtcaacat tgacgccaaa
     4381 aaagagacag cttcccagca agaaggcact gacagcgaag agccggtcgt gtgcctggac
     4441 aagaaacccg tgatcatcat ttttgatgaa cccatggaca tccggtccgc atacaagaga
     4501 ctttcaacca tatttgagga atgcgacgag gaactggaga gaatgatgac agaggagaag
     4561 atagaggaag aggaggagaa tggagatact gcggtccaga gtaacatctc ccaaaagctt
     4621 cctaaggagg gggcctcggg caacctcgga gcagggcggg aggctgagag tgaattccag
     4681 ccgcacttcc tttcagcgga gaccggaata tcaggaggac aggaagtgac tagaaccgag
     4741 cagagcaagt tcaacccagc cgattctcca agttcagaaa gccagggcga cacgaccgac
     4801 gaccagtttg aaagccccaa gaaaaagttc aaattcaaat tcccgaaaaa gcagctcgcc
     4861 gctcttacgc aagccattcg cacgggaacc aagacgggga agaagacgtt gcaggtggtg
     4921 gtctatgaag aggaggaaga ggacggcact ttgaagcagc acagagaagc caagcgcttc
     4981 gagatcagcg ggtctcgatc cgaagacacc ccgaaaggta tgctcaggag actagagcag
     5041 cccagtctgg agagcacagc tccgatttcg agaactgatg aaatcagaaa aaatacctac
     5101 aggacgttgg acagcctgga gcagaccatc aaacagctgg aaaatacgat cagtgagatg
     5161 agtcccaaag ccctagttga tacctcgtgt tcctccaaca gagagtctgt tgcaagctca
     5221 tcccacgtgg cccaggaggc ctgtccccag tccttgctag tcctggatga agctcccact
     5281 gccctagagc ccccctcgtc tgtaccttca gcttcacgta agggccccac gggaacccct
     5341 cagacgagca ggatgccgat ccccatgagt tccaagaaca gacccggaag cctggacaaa
     5401 cctggcaagc agtccaaact gcaggacccc cgccaatatc gtcaggctaa tggaagtgct
     5461 aagaaagctg gtggggactg taagcctact ttcccctcct tacctgcttc taagattcca
     5521 gccctttctc ccagctctgg gaaaagcagt tctctgcctt cttctagtgg tgacagctct
     5581 aacttcccta atccacctgc tactaaacca tcggttcctt ctaaccctct cagcccccaa
     5641 acaggacgat ctgctccctc tgcctccctc atcccctctg tctctaatgg ctccttgaag
     5701 tttcagagcc ccactcatac aggtaaaggt caccatctct cattctcact gcagactcag
     5761 aatggccgag cagcccctcc ttccttctcc tcctccctgc ccccccctgc ctccccagct
     5821 tcactgaatc aaggtgccaa gagcatcaga accatccata ctcctagcct caccagctac
     5881 aaggcacaga gcggaagttc aagcaaagcc acccagtcca cagcaaagga aacctcttaa
     5941 aggccaaatc ctattaggca cgagtcggag ttgcatttaa gaacaaaaaa atttttaaca
     6001 gtcttcgaca agtgttttca caagagaatg taacatatcg ctgtactgtt tgaggtttaa
     6061 tgctaagtat gtgctaaata ctggattaat agatttcagt aaagcttgtt tgttttttta
     6121 ctttgtcgct gttatcatta catagtgttt actgtctcta ttcaatacct gttcaatgaa
     6181 gtaagcatgt gttaccaaaa gagagtatgg caggagagaa gggtgtggtg agacaagaaa
     6241 aaaatgtatg aagcatgtaa aacatgtatg attccagaat tttagtatgt tttgtataaa
     6301 aatatttttc attacggaga ctagacgtga acagagaaat acacaagtgt gactatacaa
     6361 attgtaaaac agatactata atatttcctt ttattttagt gttatttagc tttattacag
     6421 atttctattt ttgtcaaaac ttcatggttc ctttcgagat cttttttgcc aaaacatttt
     6481 gatactgtag cattgtacat ttgaaagtag cgtgctagac aataagccaa tgaacttcta
     6541 cacaagccaa cgcagaggca catgtagaag gcaatgatca accctactgc actgccatga
     6601 aaattatgta taataatttg ccggcccaag caagctagtt ttgttctgtt tctttctttt
     6661 ttctcttttc taacatattg ggattctctg gttgttttct ttgcagtatc taaatccttc
     6721 ctttgttttc tgagacctgg taacccacac gattgcattg tggattttag aatgtacact
     6781 tctgtacggt tctgtaaact gaccaatttt tgtaaatata taaatagacc aaaaatactg
     6841 tatgtgacag cacatagagt agctttccca caccaaagtt aatttttatg catgctttaa
     6901 aaatatatct tgggatgggc agaaatggaa cttcctggac atttttaaaa agcaacaagt
     6961 ttgcacagct agagtgtttt tgtaaataaa tgtatttgta taacacagtt atgtaatata
     7021 cagaactata agcagagact ttgcaaaact aaataaaggg ctgcatgctt attatttttt
     7081 gta
//
LOCUS       XM_032621021            7008 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X4, mRNA.
ACCESSION   XM_032621021
VERSION     XM_032621021.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7008
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..7008
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             163..5865
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X4"
                     /protein_id="XP_032476912.1"
                     /db_xref="GeneID:116748129"
                     /translation="MEENESQKCEPCLPYSADSRQMQEQGKSNSQVASLEDAECRRTK
                     ERLSNGNSRVSASKSSRNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYP
                     HHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPF
                     SRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAF
                     PQQLTMKMLESPSVAIYIKDESRNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKT
                     VNGDVRMQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGG
                     TRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGF
                     YADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSL
                     YRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSR
                     QAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRETSEKMMKT
                     AANKNHTDGAGTPQVSGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQ
                     LQQMRQLQLQNQELLRALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHE
                     EEKVVRKLCDLEDFVEDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTL
                     QNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAP
                     AAQYVVMEKATAAEVLKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVI
                     QPSQLSSALLNPAQHLPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEI
                     HSVSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPAS
                     GPQPKGDAPVDKLEPSEDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGD
                     VVYTSRKENATTKASSEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEE
                     GDKIMAELQAFQKCSFMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKNLEFFHEDV
                     RKSDVEYENGPQMESWKVTAGASIPSDHPKWERGMENSISDAARTSEYKTDILMKESS
                     ISTKSLLRDGRNYSQKNVSRVNSSFSGVSSLEDEINKGPKISGLPYPVCDTENQKMNY
                     GKTKGVIQQGQENTDKCHLPSPTRSTESTIRDVKTQDREVPLTEFGQVVLRPKGARPA
                     NVTPDEDGESTAGSPTEESATTDSIAFMITKTAVQVLSSGEVRDIVSKQGQDVQTVNI
                     DAKKETASQQEGTDSEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERM
                     MTEEKIEEEEENGDTAVQSNISQKLPKEGASGNLGAGREAESEFQPHFLSAETGISGG
                     QEVTRTEQSKFNPADSPSSESQGDTTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTK
                     TGKKTLQVVVYEEEEEDGTLKQHREAKRFEISGSRSEDTPKGMLRRLEQPSLESTAPI
                     SRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSCSSNRESVASSSHVAQEA
                     CPQSLLVLDEAPTALEPPSSVPSASRKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQS
                     KLQDPRQYRQANGSAKKAGGDCKPTFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFP
                     NPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQN
                     GRAAPPSFSSSLPPPASPASLNQGAKSIRTIHTPSLTSYKAQSGSSSKATQSTAKETS
                     "
     misc_feature    724..>960
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 gagagacttt gtaccggagt ggagagtagt ttggggtggg gtttcgcacc gttccctcct
       61 ccccaccccc gggccccctt ccaggcgctt tctgggagct ttttcagaac tgcgctctga
      121 agtttaaaga tcagcgaagg gcctgggccg taggcaggga caatggaaga aaatgaaagc
      181 cagaaatgtg agccgtgcct tccttactca gcagacagca gacagatgca ggaacaagga
      241 aagagcaatt cgcaggtagc atccttagaa gatgcagaat gtcgcagaac caaggaacgc
      301 ctttctaatg gaaacagtcg cgtttcagct tccaaatctt cccgaaacat cccaaggaga
      361 cacactctag gtggacctcg aagttccaaa gaaatactgg gaatgcaaac atcagagatg
      421 gatcgtaaga gagaagcttt cctagaacat ctaaagcaga aataccccca tcatgccaca
      481 gccatcatgg gccaccaaga gaggctgaga gaccagacaa gaagccccaa actgtctcac
      541 agtcctcagc ctcccaactt gggtgaccca gtagagcatt tatcagaggc atctggagat
      601 tctttggaag ccatgtctga gggagaaact ccaagtcctt tttccagagg cagccggact
      661 cgagcgagcc ttccagtggt gaggtcgacc aaccagacga aagaaagatc tctgggggtt
      721 ctttatctcc agtacggaga tgaaaccaag cagctcagga tgccgaatga aattacaagt
      781 gcagacacaa tccgtgctct cttcgtaagt gcctttccac agcagctcac catgaaaatg
      841 ctggagtcgc ccagtgtcgc catttacatc aaagatgaaa gcagaaatgt ctattatgag
      901 ttaagtgatg tcaggaacat tcaggacaga tcccttctca aagtgtacaa caaggatcct
      961 gcccatgcat tcaaccacac accgaaaact gtgaacggag acgtgaggat gcagagagaa
     1021 atcgtttatg caagaggaga tggccctggt gcctctcgac ctggacccac aactcttcta
     1081 ccccacgcca ttccaaattc tccaccgtcc actcctgtgc cacattccat gcctccctct
     1141 ccatccagaa tcccttacgg aggcacccgg ccgatggtcg ttcctggtaa cgccaccatc
     1201 cccagggaca gactctccag cctgccggtc tccagatcca tctctcccag ccccagcgcc
     1261 atcttggaaa gaagagacgt gaagccagat gaagacatga gctccaagag cctcgcgatg
     1321 taccgaaacg agggtttcta cgccgatcct tacctttatc acgaggggag gatgagcata
     1381 gcctcttcgc acggcgggca cccactggat ctccccgacc acatcatcgg gtatcaccgc
     1441 gctgcagttc gttcagccag tgcttactgc agcccttctt tgcaagcgga aatgcacatg
     1501 gagcagtcac tgtacagaca gaagtcaagg aagtatccag agagcctctt gcctactctg
     1561 ggctccaaaa cgcccccggc ctctcctcac cgagtcagtg acctgaggat ggtggagatg
     1621 cacggtctcc ataacgccca cgggccctcc cacaccatgc agccagaccg ggtctcaccc
     1681 agccgccagg ccttcaaaaa ggagcccggc accttggtgt acattgagaa gccacggacg
     1741 actccaggat tagccggaat ggtggacctc ggccctcctc tagttgagaa gcaagtgttt
     1801 gcttatagca cggctacgat acccaaagac agagagacca gcgagaaaat gatgaaaacc
     1861 gcagccaata agaaccacac agatggtgca ggaactcccc aggtttccgg cgggaagcct
     1921 cttggcgccc tggagtcctc ggggccacgc agccagctcc cgcctgctgg cacctccgcc
     1981 gcccacatga gcctgctcga catgaagagg agtgtggccg aactcaggct ccagctgcag
     2041 cagatgcgac agctccagct gcagaaccag gagctgctga gggcgctgat gaggaaggct
     2101 gagcaggaaa tcaacagcaa ggtgattgaa acgttgaaga gactggagga ccctgtgcag
     2161 cgacagcggg tcctggtgga acaggagagg cagaagtacc tgcacgagga ggaaaaggtt
     2221 gtccggaagt tgtgtgacct ggaagacttc gttgaagatt taaagaagga ctctgccttg
     2281 gccagccgcg tggttactct aaaagatgtg gaagacgggg ctttcctcct gcaccaggtg
     2341 ggagaggcag tagcttccct gaaaggagaa tttccaacct tacaaaacaa gatgcgagcc
     2401 atcctgcgca tagaagtgga ggccgtgcgg tttctgaagg aggagccgca caggctggac
     2461 agtctcctac agagagtgcg tggcatgacc gacgccctga ccacgctgcg caggcatgtc
     2521 actgatgggc tcttgaaggg cacagatgcg gccccggccg cacagtatgt cgtgatggaa
     2581 aaggccacgg ccgcagaagt cctgaaggcc caggaggagg ctccccgcgc ctcgggccag
     2641 cccctccccg gtgcgggcgt ccccggcgac gtgaaatcgg aagtggtacc cttgacggtt
     2701 caccacgctc agagctctcc tgtggtcatc cagccgtccc agctctcctc cgcgctgctg
     2761 aaccctgccc agcacttgcc aggggggccc gggcctcacc cggccagccc tcccgctgtc
     2821 acacaggagg tgacctcagc tctgcagtcc ccgcagatgc ccgggaatgg ttcctccatg
     2881 cagagcctgt tcatggacga aatccacagt gtgagtgcca agaacagggc agtgtctatc
     2941 gagaaagcag aaaggaaatg ggaagagaaa aggcaaaatc tggaccacta taacggaaaa
     3001 gagtttgaga agctcctaga agaagcccag gccaatatta tgaagtcaat tccaaacctg
     3061 gagatgccgc cagcctcggg cccacagcca aagggcgatg ctccagtgga caagctagaa
     3121 ccttcagaag actctccaaa ttcagaacag gacttggaca agctgggggc taagtccccg
     3181 cctcgtcctc ccccacctcc acggaggagc tatctgccag gatcggggct caccaccacg
     3241 aggtccggcg atgtggtcta caccagcagg aaggagaatg ccaccacaaa ggcaagcagt
     3301 gaagatgctg gaccaagcct gcaggctaga gccacaaagt gtccagcaga ggagcctgct
     3361 tcagcctggg ccccgtcacc accacctgtc actacttcct ccttcaagga tgaggaggaa
     3421 gaagaaggag acaaaatcat ggcagaactc caggcattcc agaagtgttc ctttatggat
     3481 gtaaattcaa acagtcacgc tgagcagtcc cgggctgaca gtcaccttaa agacactagg
     3541 ccgggggcca cagccctccc caaggagaag aagaatttgg aatttttcca cgaagacgta
     3601 cggaaatctg atgttgaata tgaaaatggc ccccaaatgg aatcctggaa ggttaccgca
     3661 ggggcttcca tacctagtga ccatcctaag tgggaaagag gaatggagaa tagtatttct
     3721 gatgcagcaa gaacatcaga atacaaaact gacatcttaa tgaaggaaag ttccatatcc
     3781 actaagagtt tacttagaga cggtagaaac tattcccaga aaaacgtgtc cagggtcaat
     3841 tctagtttct ctggcgttag ttccttagaa gatgaaatca acaaaggacc taaaatctca
     3901 gggctgccgt accctgtatg tgacactgag aatcagaaga tgaattatgg gaagacaaag
     3961 ggggtgatcc agcaaggaca agaaaataca gataagtgtc accttccctc tcccactaga
     4021 tcaaccgaat cgactattcg tgatgtcaaa actcaagacc gagaggttcc cttgacagag
     4081 tttggccaag ttgtcctaag accgaaggga gccaggcccg ctaacgtgac gcctgatgag
     4141 gatggagagt caacggcagg ctctcccacc gaggagagtg caaccaccga cagcattgcc
     4201 ttcatgatca ccaaaaccgc ggtccaagtt ctctccagcg gggaggtccg cgacatagtg
     4261 agcaaacagg ggcaagatgt acagacggtc aacattgacg ccaaaaaaga gacagcttcc
     4321 cagcaagaag gcactgacag cgaagagccg gtcgtgtgcc tggacaagaa acccgtgatc
     4381 atcatttttg atgaacccat ggacatccgg tccgcataca agagactttc aaccatattt
     4441 gaggaatgcg acgaggaact ggagagaatg atgacagagg agaagataga ggaagaggag
     4501 gagaatggag atactgcggt ccagagtaac atctcccaaa agcttcctaa ggagggggcc
     4561 tcgggcaacc tcggagcagg gcgggaggct gagagtgaat tccagccgca cttcctttca
     4621 gcggagaccg gaatatcagg aggacaggaa gtgactagaa ccgagcagag caagttcaac
     4681 ccagccgatt ctccaagttc agaaagccag ggcgacacga ccgacgacca gtttgaaagc
     4741 cccaagaaaa agttcaaatt caaattcccg aaaaagcagc tcgccgctct tacgcaagcc
     4801 attcgcacgg gaaccaagac ggggaagaag acgttgcagg tggtggtcta tgaagaggag
     4861 gaagaggacg gcactttgaa gcagcacaga gaagccaagc gcttcgagat cagcgggtct
     4921 cgatccgaag acaccccgaa aggtatgctc aggagactag agcagcccag tctggagagc
     4981 acagctccga tttcgagaac tgatgaaatc agaaaaaata cctacaggac gttggacagc
     5041 ctggagcaga ccatcaaaca gctggaaaat acgatcagtg agatgagtcc caaagcccta
     5101 gttgatacct cgtgttcctc caacagagag tctgttgcaa gctcatccca cgtggcccag
     5161 gaggcctgtc cccagtcctt gctagtcctg gatgaagctc ccactgccct agagcccccc
     5221 tcgtctgtac cttcagcttc acgtaagggc cccacgggaa cccctcagac gagcaggatg
     5281 ccgatcccca tgagttccaa gaacagaccc ggaagcctgg acaaacctgg caagcagtcc
     5341 aaactgcagg acccccgcca atatcgtcag gctaatggaa gtgctaagaa agctggtggg
     5401 gactgtaagc ctactttccc ctccttacct gcttctaaga ttccagccct ttctcccagc
     5461 tctgggaaaa gcagttctct gccttcttct agtggtgaca gctctaactt ccctaatcca
     5521 cctgctacta aaccatcggt tccttctaac cctctcagcc cccaaacagg acgatctgct
     5581 ccctctgcct ccctcatccc ctctgtctct aatggctcct tgaagtttca gagccccact
     5641 catacaggta aaggtcacca tctctcattc tcactgcaga ctcagaatgg ccgagcagcc
     5701 cctccttcct tctcctcctc cctgcccccc cctgcctccc cagcttcact gaatcaaggt
     5761 gccaagagca tcagaaccat ccatactcct agcctcacca gctacaaggc acagagcgga
     5821 agttcaagca aagccaccca gtccacagca aaggaaacct cttaaaggcc aaatcctatt
     5881 aggcacgagt cggagttgca tttaagaaca aaaaaatttt taacagtctt cgacaagtgt
     5941 tttcacaaga gaatgtaaca tatcgctgta ctgtttgagg tttaatgcta agtatgtgct
     6001 aaatactgga ttaatagatt tcagtaaagc ttgtttgttt ttttactttg tcgctgttat
     6061 cattacatag tgtttactgt ctctattcaa tacctgttca atgaagtaag catgtgttac
     6121 caaaagagag tatggcagga gagaagggtg tggtgagaca agaaaaaaat gtatgaagca
     6181 tgtaaaacat gtatgattcc agaattttag tatgttttgt ataaaaatat ttttcattac
     6241 ggagactaga cgtgaacaga gaaatacaca agtgtgacta tacaaattgt aaaacagata
     6301 ctataatatt tccttttatt ttagtgttat ttagctttat tacagatttc tatttttgtc
     6361 aaaacttcat ggttcctttc gagatctttt ttgccaaaac attttgatac tgtagcattg
     6421 tacatttgaa agtagcgtgc tagacaataa gccaatgaac ttctacacaa gccaacgcag
     6481 aggcacatgt agaaggcaat gatcaaccct actgcactgc catgaaaatt atgtataata
     6541 atttgccggc ccaagcaagc tagttttgtt ctgtttcttt cttttttctc ttttctaaca
     6601 tattgggatt ctctggttgt tttctttgca gtatctaaat ccttcctttg ttttctgaga
     6661 cctggtaacc cacacgattg cattgtggat tttagaatgt acacttctgt acggttctgt
     6721 aaactgacca atttttgtaa atatataaat agaccaaaaa tactgtatgt gacagcacat
     6781 agagtagctt tcccacacca aagttaattt ttatgcatgc tttaaaaata tatcttggga
     6841 tgggcagaaa tggaacttcc tggacatttt taaaaagcaa caagtttgca cagctagagt
     6901 gtttttgtaa ataaatgtat ttgtataaca cagttatgta atatacagaa ctataagcag
     6961 agactttgca aaactaaata aagggctgca tgcttattat tttttgta
//
LOCUS       XM_032621030            6613 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X5, mRNA.
ACCESSION   XM_032621030
VERSION     XM_032621030.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6613
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6613
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             113..5470
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X5"
                     /protein_id="XP_032476921.1"
                     /db_xref="GeneID:116748129"
                     /translation="MSEGETPSPFSRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDE
                     TKQLRMPNEITSADTIRALFVSAFPQQLTMKMLESPSVAIYIKDESRNVYYELSDVRN
                     IQDRSLLKVYNKDPAHAFNHTPKTVNGDVRMQREIVYARGDGPGASRPGPTTLLPHAI
                     PNSPPSTPVPHSMPPSPSRIPYGGTRPMVVPGNATIPRDRLSSLPVSRSISPSPSAIL
                     ERRDVKPDEDMSSKSLAMYRNEGFYADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHR
                     AAVRSASAYCSPSLQAEMHMEQSLYRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMV
                     EMHGLHNAHGPSHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVE
                     KQVFAYSTATIPKDRETRERMQAMEKQIASLTGLVQSALFKGPLTSNSKDASSEKMMK
                     TAANKNHTDGAGTPQVSGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRL
                     QLQQMRQLQLQNQELLRALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQERQKYLH
                     EEEKVVRKLCDLEDFVEDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPT
                     LQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAA
                     PAAQYVVMEKATAAEVLKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVV
                     IQPSQLSSALLNPAQHLPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDE
                     IHSVSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPA
                     SGPQPKGDAPVDKLEPSEDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSG
                     DVVYTSRKENATTKASSEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSSFKDEEEE
                     EGDKIMAELQAFQKCSFMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKNLEFFHED
                     VRKSDVEYENGPQMESWKVTAGASIPSDHPKWERGMENSISDAARTSEYKTDILMKES
                     SISTKSLLRDGRNYSQKNVSRVNSSFSGVSSLEDEINKGPKISGLPYPVCDTENQKMN
                     YGKTKGVIQQGQENTDKCHLPSPTRSTESTIRDVKTQDREVPLTEFGQVVLRPKGARP
                     ANVTPDEDGESTAGSPTEESATTDSIAFMITKTAVQVLSSGEVRDIVSKQGQDVQTVN
                     IDAKKETASQQEGTDSEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELER
                     MMTEEKIEEEEENGDTAVQSNISQKLPKEGASGNLGAGREAESEFQPHFLSAETGISG
                     GQEVTRTEQSKFNPADSPSSESQGDTTDDQFESPKKKFKFKFPKKQLAALTQAIRTGT
                     KTGKKTLQVVVYEEEEEDGTLKQHREAKRFEISGSRSEDTPKGMLRRLEQPSLESTAP
                     ISRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSCSSNRESVASSSHVAQE
                     ACPQSLLVLDEAPTALEPPSSVPSASRKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQ
                     SKLQDPRQYRQANGSAKKAGGDCKPTFPSLPASKIPALSPSSGKSSSLPSSSGDSSNF
                     PNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQ
                     NGRAAPPSFSSSLPPPASPASLNQGAKSIRTIHTPSLTSYKAQSGSSSKATQSTAKET
                     S"
     misc_feature    224..>460
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 acctgtggag ctccagacaa gaagccccaa actgtctcac agtcctcagc ctcccaactt
       61 gggtgaccca gtagagcatt tatcagaggc atctggagat tctttggaag ccatgtctga
      121 gggagaaact ccaagtcctt tttccagagg cagccggact cgagcgagcc ttccagtggt
      181 gaggtcgacc aaccagacga aagaaagatc tctgggggtt ctttatctcc agtacggaga
      241 tgaaaccaag cagctcagga tgccgaatga aattacaagt gcagacacaa tccgtgctct
      301 cttcgtaagt gcctttccac agcagctcac catgaaaatg ctggagtcgc ccagtgtcgc
      361 catttacatc aaagatgaaa gcagaaatgt ctattatgag ttaagtgatg tcaggaacat
      421 tcaggacaga tcccttctca aagtgtacaa caaggatcct gcccatgcat tcaaccacac
      481 accgaaaact gtgaacggag acgtgaggat gcagagagaa atcgtttatg caagaggaga
      541 tggccctggt gcctctcgac ctggacccac aactcttcta ccccacgcca ttccaaattc
      601 tccaccgtcc actcctgtgc cacattccat gcctccctct ccatccagaa tcccttacgg
      661 aggcacccgg ccgatggtcg ttcctggtaa cgccaccatc cccagggaca gactctccag
      721 cctgccggtc tccagatcca tctctcccag ccccagcgcc atcttggaaa gaagagacgt
      781 gaagccagat gaagacatga gctccaagag cctcgcgatg taccgaaacg agggtttcta
      841 cgccgatcct tacctttatc acgaggggag gatgagcata gcctcttcgc acggcgggca
      901 cccactggat ctccccgacc acatcatcgg gtatcaccgc gctgcagttc gttcagccag
      961 tgcttactgc agcccttctt tgcaagcgga aatgcacatg gagcagtcac tgtacagaca
     1021 gaagtcaagg aagtatccag agagcctctt gcctactctg ggctccaaaa cgcccccggc
     1081 ctctcctcac cgagtcagtg acctgaggat ggtggagatg cacggtctcc ataacgccca
     1141 cgggccctcc cacaccatgc agccagaccg ggtctcaccc agccgccagg ccttcaaaaa
     1201 ggagcccggc accttggtgt acattgagaa gccacggacg actccaggat tagccggaat
     1261 ggtggacctc ggccctcctc tagttgagaa gcaagtgttt gcttatagca cggctacgat
     1321 acccaaagac agagagacca gagagaggat gcaagccatg gagaaacaga ttgccagttt
     1381 aactggcctt gttcagtctg cgctttttaa agggcccctt acaagtaata gcaaagatgc
     1441 atctagcgag aaaatgatga aaaccgcagc caataagaac cacacagatg gtgcaggaac
     1501 tccccaggtt tccggcggga agcctcttgg cgccctggag tcctcggggc cacgcagcca
     1561 gctcccgcct gctggcacct ccgccgccca catgagcctg ctcgacatga agaggagtgt
     1621 ggccgaactc aggctccagc tgcagcagat gcgacagctc cagctgcaga accaggagct
     1681 gctgagggcg ctgatgagga aggctgagca ggaaatcaac agcaaggtga ttgaaacgtt
     1741 gaagagactg gaggaccctg tgcagcgaca gcgggtcctg gtggaacagg agaggcagaa
     1801 gtacctgcac gaggaggaaa aggttgtccg gaagttgtgt gacctggaag acttcgttga
     1861 agatttaaag aaggactctg ccttggccag ccgcgtggtt actctaaaag atgtggaaga
     1921 cggggctttc ctcctgcacc aggtgggaga ggcagtagct tccctgaaag gagaatttcc
     1981 aaccttacaa aacaagatgc gagccatcct gcgcatagaa gtggaggccg tgcggtttct
     2041 gaaggaggag ccgcacaggc tggacagtct cctacagaga gtgcgtggca tgaccgacgc
     2101 cctgaccacg ctgcgcaggc atgtcactga tgggctcttg aagggcacag atgcggcccc
     2161 ggccgcacag tatgtcgtga tggaaaaggc cacggccgca gaagtcctga aggcccagga
     2221 ggaggctccc cgcgcctcgg gccagcccct ccccggtgcg ggcgtccccg gcgacgtgaa
     2281 atcggaagtg gtacccttga cggttcacca cgctcagagc tctcctgtgg tcatccagcc
     2341 gtcccagctc tcctccgcgc tgctgaaccc tgcccagcac ttgccagggg ggcccgggcc
     2401 tcacccggcc agccctcccg ctgtcacaca ggaggtgacc tcagctctgc agtccccgca
     2461 gatgcccggg aatggttcct ccatgcagag cctgttcatg gacgaaatcc acagtgtgag
     2521 tgccaagaac agggcagtgt ctatcgagaa agcagaaagg aaatgggaag agaaaaggca
     2581 aaatctggac cactataacg gaaaagagtt tgagaagctc ctagaagaag cccaggccaa
     2641 tattatgaag tcaattccaa acctggagat gccgccagcc tcgggcccac agccaaaggg
     2701 cgatgctcca gtggacaagc tagaaccttc agaagactct ccaaattcag aacaggactt
     2761 ggacaagctg ggggctaagt ccccgcctcg tcctccccca cctccacgga ggagctatct
     2821 gccaggatcg gggctcacca ccacgaggtc cggcgatgtg gtctacacca gcaggaagga
     2881 gaatgccacc acaaaggcaa gcagtgaaga tgctggacca agcctgcagg ctagagccac
     2941 aaagtgtcca gcagaggagc ctgcttcagc ctgggccccg tcaccaccac ctgtcactac
     3001 ttcctccttc aaggatgagg aggaagaaga aggagacaaa atcatggcag aactccaggc
     3061 attccagaag tgttccttta tggatgtaaa ttcaaacagt cacgctgagc agtcccgggc
     3121 tgacagtcac cttaaagaca ctaggccggg ggccacagcc ctccccaagg agaagaagaa
     3181 tttggaattt ttccacgaag acgtacggaa atctgatgtt gaatatgaaa atggccccca
     3241 aatggaatcc tggaaggtta ccgcaggggc ttccatacct agtgaccatc ctaagtggga
     3301 aagaggaatg gagaatagta tttctgatgc agcaagaaca tcagaataca aaactgacat
     3361 cttaatgaag gaaagttcca tatccactaa gagtttactt agagacggta gaaactattc
     3421 ccagaaaaac gtgtccaggg tcaattctag tttctctggc gttagttcct tagaagatga
     3481 aatcaacaaa ggacctaaaa tctcagggct gccgtaccct gtatgtgaca ctgagaatca
     3541 gaagatgaat tatgggaaga caaagggggt gatccagcaa ggacaagaaa atacagataa
     3601 gtgtcacctt ccctctccca ctagatcaac cgaatcgact attcgtgatg tcaaaactca
     3661 agaccgagag gttcccttga cagagtttgg ccaagttgtc ctaagaccga agggagccag
     3721 gcccgctaac gtgacgcctg atgaggatgg agagtcaacg gcaggctctc ccaccgagga
     3781 gagtgcaacc accgacagca ttgccttcat gatcaccaaa accgcggtcc aagttctctc
     3841 cagcggggag gtccgcgaca tagtgagcaa acaggggcaa gatgtacaga cggtcaacat
     3901 tgacgccaaa aaagagacag cttcccagca agaaggcact gacagcgaag agccggtcgt
     3961 gtgcctggac aagaaacccg tgatcatcat ttttgatgaa cccatggaca tccggtccgc
     4021 atacaagaga ctttcaacca tatttgagga atgcgacgag gaactggaga gaatgatgac
     4081 agaggagaag atagaggaag aggaggagaa tggagatact gcggtccaga gtaacatctc
     4141 ccaaaagctt cctaaggagg gggcctcggg caacctcgga gcagggcggg aggctgagag
     4201 tgaattccag ccgcacttcc tttcagcgga gaccggaata tcaggaggac aggaagtgac
     4261 tagaaccgag cagagcaagt tcaacccagc cgattctcca agttcagaaa gccagggcga
     4321 cacgaccgac gaccagtttg aaagccccaa gaaaaagttc aaattcaaat tcccgaaaaa
     4381 gcagctcgcc gctcttacgc aagccattcg cacgggaacc aagacgggga agaagacgtt
     4441 gcaggtggtg gtctatgaag aggaggaaga ggacggcact ttgaagcagc acagagaagc
     4501 caagcgcttc gagatcagcg ggtctcgatc cgaagacacc ccgaaaggta tgctcaggag
     4561 actagagcag cccagtctgg agagcacagc tccgatttcg agaactgatg aaatcagaaa
     4621 aaatacctac aggacgttgg acagcctgga gcagaccatc aaacagctgg aaaatacgat
     4681 cagtgagatg agtcccaaag ccctagttga tacctcgtgt tcctccaaca gagagtctgt
     4741 tgcaagctca tcccacgtgg cccaggaggc ctgtccccag tccttgctag tcctggatga
     4801 agctcccact gccctagagc ccccctcgtc tgtaccttca gcttcacgta agggccccac
     4861 gggaacccct cagacgagca ggatgccgat ccccatgagt tccaagaaca gacccggaag
     4921 cctggacaaa cctggcaagc agtccaaact gcaggacccc cgccaatatc gtcaggctaa
     4981 tggaagtgct aagaaagctg gtggggactg taagcctact ttcccctcct tacctgcttc
     5041 taagattcca gccctttctc ccagctctgg gaaaagcagt tctctgcctt cttctagtgg
     5101 tgacagctct aacttcccta atccacctgc tactaaacca tcggttcctt ctaaccctct
     5161 cagcccccaa acaggacgat ctgctccctc tgcctccctc atcccctctg tctctaatgg
     5221 ctccttgaag tttcagagcc ccactcatac aggtaaaggt caccatctct cattctcact
     5281 gcagactcag aatggccgag cagcccctcc ttccttctcc tcctccctgc ccccccctgc
     5341 ctccccagct tcactgaatc aaggtgccaa gagcatcaga accatccata ctcctagcct
     5401 caccagctac aaggcacaga gcggaagttc aagcaaagcc acccagtcca cagcaaagga
     5461 aacctcttaa aggccaaatc ctattaggca cgagtcggag ttgcatttaa gaacaaaaaa
     5521 atttttaaca gtcttcgaca agtgttttca caagagaatg taacatatcg ctgtactgtt
     5581 tgaggtttaa tgctaagtat gtgctaaata ctggattaat agatttcagt aaagcttgtt
     5641 tgttttttta ctttgtcgct gttatcatta catagtgttt actgtctcta ttcaatacct
     5701 gttcaatgaa gtaagcatgt gttaccaaaa gagagtatgg caggagagaa gggtgtggtg
     5761 agacaagaaa aaaatgtatg aagcatgtaa aacatgtatg attccagaat tttagtatgt
     5821 tttgtataaa aatatttttc attacggaga ctagacgtga acagagaaat acacaagtgt
     5881 gactatacaa attgtaaaac agatactata atatttcctt ttattttagt gttatttagc
     5941 tttattacag atttctattt ttgtcaaaac ttcatggttc ctttcgagat cttttttgcc
     6001 aaaacatttt gatactgtag cattgtacat ttgaaagtag cgtgctagac aataagccaa
     6061 tgaacttcta cacaagccaa cgcagaggca catgtagaag gcaatgatca accctactgc
     6121 actgccatga aaattatgta taataatttg ccggcccaag caagctagtt ttgttctgtt
     6181 tctttctttt ttctcttttc taacatattg ggattctctg gttgttttct ttgcagtatc
     6241 taaatccttc ctttgttttc tgagacctgg taacccacac gattgcattg tggattttag
     6301 aatgtacact tctgtacggt tctgtaaact gaccaatttt tgtaaatata taaatagacc
     6361 aaaaatactg tatgtgacag cacatagagt agctttccca caccaaagtt aatttttatg
     6421 catgctttaa aaatatatct tgggatgggc agaaatggaa cttcctggac atttttaaaa
     6481 agcaacaagt ttgcacagct agagtgtttt tgtaaataaa tgtatttgta taacacagtt
     6541 atgtaatata cagaactata agcagagact ttgcaaaact aaataaaggg ctgcatgctt
     6601 attatttttt gta
//
LOCUS       XM_032621038            6995 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X6, mRNA.
ACCESSION   XM_032621038
VERSION     XM_032621038.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6995
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6995
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             285..5852
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X6"
                     /protein_id="XP_032476929.1"
                     /db_xref="GeneID:116748129"
                     /translation="MQTSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQTRSPKL
                     SHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPFSRGSRTRASLPVVRSTNQTKER
                     SLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAFPQQLTMKMLESPSVAIYIKDES
                     RNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKTVNGDVRMQREIVYARGDGPGAS
                     RPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGGTRPMVVPGNATIPRDRLSSLPV
                     SRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGFYADPYLYHEGRMSIASSHGGHP
                     LDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSLYRQKSRKYPESLLPTLGSKTPP
                     ASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTTPGL
                     AGMVDLGPPLVEKQVFAYSTATIPKDRETRERMQAMEKQIASLTGLVQSALFKGPLTS
                     NSKDASSEKMMKTAANKNHTDGAGTPQVSGGKPLGALESSGPRSQLPPAGTSAAHMSL
                     LDMKRSVAELRLQLQQMRQLQLQNQELLRALMRKAEQEINSKVIETLKRLEDPVQRQR
                     VLVEQERQKYLHEEEKVVRKLCDLEDFVEDLKKDSALASRVVTLKDVEDGAFLLHQVG
                     EAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDALTTLRRH
                     VTDGLLKGTDAAPAAQYVVMEKATAAEVLKAQEEAPRASGQPLPGAGVPGDVKSEVVP
                     LTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGPGPHPASPPAVTQEVTSALQSPQMPG
                     NGSSMQSLFMDEIHSVSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANI
                     MKSIPNLEMPPASGPQPKGDAPVDKLEPSEDSPNSEQDLDKLGAKSPPRPPPPPRRSY
                     LPGSGLTTTRSGDVVYTSRKENATTKASSEDAGPSLQARATKCPAEEPASAWAPSPPP
                     VTTSSFKDEEEEEGDKIMAELQAFQKCSFMDVNSNSHAEQSRADSHLKDTRPGATALP
                     KEKKNLEFFHEDVRKSDVEYENGPQMESWKVTAGASIPSDHPKWERGMENSISDAART
                     SEYKTDILMKESSISTKSLLRDGRNYSQKNVSRVNSSFSGVSSLEDEINKGPKISGLP
                     YPVCDTENQKMNYGKTKGVIQQGQENTDKCHLPSPTRSTESTIRDVKTQDREVPLTEF
                     GQVVLRPKGARPANVTPDEDGESTAGSPTEESATTDSIAFMITKTAVQVLSSGEVRDI
                     VSKQGQDVQTVNIDAKKETASQQEGTDSEEPVVCLDKKPVIIIFDEPMDIRSAYKRLS
                     TIFEECDEELERMMTEEKIEEEEENGDTAVQSNISQKLPKEGASGNLGAGREAESEFQ
                     PHFLSAETGISGGQEVTRTEQSKFNPADSPSSESQGDTTDDQFESPKKKFKFKFPKKQ
                     LAALTQAIRTGTKTGKKTLQVVVYEEEEEDGTLKQHREAKRFEISGSRSEDTPKGMLR
                     RLEQPSLESTAPISRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSCSSNR
                     ESVASSSHVAQEACPQSLLVLDEAPTALEPPSSVPSASRKGPTGTPQTSRMPIPMSSK
                     NRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPTFPSLPASKIPALSPSSGKSS
                     SLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTG
                     KGHHLSFSLQTQNGRAAPPSFSSSLPPPASPASLNQGAKSIRTIHTPSLTSYKAQSGS
                     SSKATQSTAKETS"
     misc_feature    606..>842
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 gtgctgtgtg tccagaagac ggagctggag tcccaatcca gagcccctgg gtgtcgcccc
       61 agaagactgt gctacttatc ggtggaggac gctgcctcct cattttcttt ctagaacaag
      121 gaaagagcaa ttcgcaggta gcatccttag aagatgcaga atgtcgcaga accaaggaac
      181 gcctttctaa tggaaacagt cgcgtttcag cttccaaatc ttcccgaaac atcccaagga
      241 gacacactct aggtggacct cgaagttcca aagaaatact gggaatgcaa acatcagaga
      301 tggatcgtaa gagagaagct ttcctagaac atctaaagca gaaatacccc catcatgcca
      361 cagccatcat gggccaccaa gagaggctga gagaccagac aagaagcccc aaactgtctc
      421 acagtcctca gcctcccaac ttgggtgacc cagtagagca tttatcagag gcatctggag
      481 attctttgga agccatgtct gagggagaaa ctccaagtcc tttttccaga ggcagccgga
      541 ctcgagcgag ccttccagtg gtgaggtcga ccaaccagac gaaagaaaga tctctggggg
      601 ttctttatct ccagtacgga gatgaaacca agcagctcag gatgccgaat gaaattacaa
      661 gtgcagacac aatccgtgct ctcttcgtaa gtgcctttcc acagcagctc accatgaaaa
      721 tgctggagtc gcccagtgtc gccatttaca tcaaagatga aagcagaaat gtctattatg
      781 agttaagtga tgtcaggaac attcaggaca gatcccttct caaagtgtac aacaaggatc
      841 ctgcccatgc attcaaccac acaccgaaaa ctgtgaacgg agacgtgagg atgcagagag
      901 aaatcgttta tgcaagagga gatggccctg gtgcctctcg acctggaccc acaactcttc
      961 taccccacgc cattccaaat tctccaccgt ccactcctgt gccacattcc atgcctccct
     1021 ctccatccag aatcccttac ggaggcaccc ggccgatggt cgttcctggt aacgccacca
     1081 tccccaggga cagactctcc agcctgccgg tctccagatc catctctccc agccccagcg
     1141 ccatcttgga aagaagagac gtgaagccag atgaagacat gagctccaag agcctcgcga
     1201 tgtaccgaaa cgagggtttc tacgccgatc cttaccttta tcacgagggg aggatgagca
     1261 tagcctcttc gcacggcggg cacccactgg atctccccga ccacatcatc gggtatcacc
     1321 gcgctgcagt tcgttcagcc agtgcttact gcagcccttc tttgcaagcg gaaatgcaca
     1381 tggagcagtc actgtacaga cagaagtcaa ggaagtatcc agagagcctc ttgcctactc
     1441 tgggctccaa aacgcccccg gcctctcctc accgagtcag tgacctgagg atggtggaga
     1501 tgcacggtct ccataacgcc cacgggccct cccacaccat gcagccagac cgggtctcac
     1561 ccagccgcca ggccttcaaa aaggagcccg gcaccttggt gtacattgag aagccacgga
     1621 cgactccagg attagccgga atggtggacc tcggccctcc tctagttgag aagcaagtgt
     1681 ttgcttatag cacggctacg atacccaaag acagagagac cagagagagg atgcaagcca
     1741 tggagaaaca gattgccagt ttaactggcc ttgttcagtc tgcgcttttt aaagggcccc
     1801 ttacaagtaa tagcaaagat gcatctagcg agaaaatgat gaaaaccgca gccaataaga
     1861 accacacaga tggtgcagga actccccagg tttccggcgg gaagcctctt ggcgccctgg
     1921 agtcctcggg gccacgcagc cagctcccgc ctgctggcac ctccgccgcc cacatgagcc
     1981 tgctcgacat gaagaggagt gtggccgaac tcaggctcca gctgcagcag atgcgacagc
     2041 tccagctgca gaaccaggag ctgctgaggg cgctgatgag gaaggctgag caggaaatca
     2101 acagcaaggt gattgaaacg ttgaagagac tggaggaccc tgtgcagcga cagcgggtcc
     2161 tggtggaaca ggagaggcag aagtacctgc acgaggagga aaaggttgtc cggaagttgt
     2221 gtgacctgga agacttcgtt gaagatttaa agaaggactc tgccttggcc agccgcgtgg
     2281 ttactctaaa agatgtggaa gacggggctt tcctcctgca ccaggtggga gaggcagtag
     2341 cttccctgaa aggagaattt ccaaccttac aaaacaagat gcgagccatc ctgcgcatag
     2401 aagtggaggc cgtgcggttt ctgaaggagg agccgcacag gctggacagt ctcctacaga
     2461 gagtgcgtgg catgaccgac gccctgacca cgctgcgcag gcatgtcact gatgggctct
     2521 tgaagggcac agatgcggcc ccggccgcac agtatgtcgt gatggaaaag gccacggccg
     2581 cagaagtcct gaaggcccag gaggaggctc cccgcgcctc gggccagccc ctccccggtg
     2641 cgggcgtccc cggcgacgtg aaatcggaag tggtaccctt gacggttcac cacgctcaga
     2701 gctctcctgt ggtcatccag ccgtcccagc tctcctccgc gctgctgaac cctgcccagc
     2761 acttgccagg ggggcccggg cctcacccgg ccagccctcc cgctgtcaca caggaggtga
     2821 cctcagctct gcagtccccg cagatgcccg ggaatggttc ctccatgcag agcctgttca
     2881 tggacgaaat ccacagtgtg agtgccaaga acagggcagt gtctatcgag aaagcagaaa
     2941 ggaaatggga agagaaaagg caaaatctgg accactataa cggaaaagag tttgagaagc
     3001 tcctagaaga agcccaggcc aatattatga agtcaattcc aaacctggag atgccgccag
     3061 cctcgggccc acagccaaag ggcgatgctc cagtggacaa gctagaacct tcagaagact
     3121 ctccaaattc agaacaggac ttggacaagc tgggggctaa gtccccgcct cgtcctcccc
     3181 cacctccacg gaggagctat ctgccaggat cggggctcac caccacgagg tccggcgatg
     3241 tggtctacac cagcaggaag gagaatgcca ccacaaaggc aagcagtgaa gatgctggac
     3301 caagcctgca ggctagagcc acaaagtgtc cagcagagga gcctgcttca gcctgggccc
     3361 cgtcaccacc acctgtcact acttcctcct tcaaggatga ggaggaagaa gaaggagaca
     3421 aaatcatggc agaactccag gcattccaga agtgttcctt tatggatgta aattcaaaca
     3481 gtcacgctga gcagtcccgg gctgacagtc accttaaaga cactaggccg ggggccacag
     3541 ccctccccaa ggagaagaag aatttggaat ttttccacga agacgtacgg aaatctgatg
     3601 ttgaatatga aaatggcccc caaatggaat cctggaaggt taccgcaggg gcttccatac
     3661 ctagtgacca tcctaagtgg gaaagaggaa tggagaatag tatttctgat gcagcaagaa
     3721 catcagaata caaaactgac atcttaatga aggaaagttc catatccact aagagtttac
     3781 ttagagacgg tagaaactat tcccagaaaa acgtgtccag ggtcaattct agtttctctg
     3841 gcgttagttc cttagaagat gaaatcaaca aaggacctaa aatctcaggg ctgccgtacc
     3901 ctgtatgtga cactgagaat cagaagatga attatgggaa gacaaagggg gtgatccagc
     3961 aaggacaaga aaatacagat aagtgtcacc ttccctctcc cactagatca accgaatcga
     4021 ctattcgtga tgtcaaaact caagaccgag aggttccctt gacagagttt ggccaagttg
     4081 tcctaagacc gaagggagcc aggcccgcta acgtgacgcc tgatgaggat ggagagtcaa
     4141 cggcaggctc tcccaccgag gagagtgcaa ccaccgacag cattgccttc atgatcacca
     4201 aaaccgcggt ccaagttctc tccagcgggg aggtccgcga catagtgagc aaacaggggc
     4261 aagatgtaca gacggtcaac attgacgcca aaaaagagac agcttcccag caagaaggca
     4321 ctgacagcga agagccggtc gtgtgcctgg acaagaaacc cgtgatcatc atttttgatg
     4381 aacccatgga catccggtcc gcatacaaga gactttcaac catatttgag gaatgcgacg
     4441 aggaactgga gagaatgatg acagaggaga agatagagga agaggaggag aatggagata
     4501 ctgcggtcca gagtaacatc tcccaaaagc ttcctaagga gggggcctcg ggcaacctcg
     4561 gagcagggcg ggaggctgag agtgaattcc agccgcactt cctttcagcg gagaccggaa
     4621 tatcaggagg acaggaagtg actagaaccg agcagagcaa gttcaaccca gccgattctc
     4681 caagttcaga aagccagggc gacacgaccg acgaccagtt tgaaagcccc aagaaaaagt
     4741 tcaaattcaa attcccgaaa aagcagctcg ccgctcttac gcaagccatt cgcacgggaa
     4801 ccaagacggg gaagaagacg ttgcaggtgg tggtctatga agaggaggaa gaggacggca
     4861 ctttgaagca gcacagagaa gccaagcgct tcgagatcag cgggtctcga tccgaagaca
     4921 ccccgaaagg tatgctcagg agactagagc agcccagtct ggagagcaca gctccgattt
     4981 cgagaactga tgaaatcaga aaaaatacct acaggacgtt ggacagcctg gagcagacca
     5041 tcaaacagct ggaaaatacg atcagtgaga tgagtcccaa agccctagtt gatacctcgt
     5101 gttcctccaa cagagagtct gttgcaagct catcccacgt ggcccaggag gcctgtcccc
     5161 agtccttgct agtcctggat gaagctccca ctgccctaga gcccccctcg tctgtacctt
     5221 cagcttcacg taagggcccc acgggaaccc ctcagacgag caggatgccg atccccatga
     5281 gttccaagaa cagacccgga agcctggaca aacctggcaa gcagtccaaa ctgcaggacc
     5341 cccgccaata tcgtcaggct aatggaagtg ctaagaaagc tggtggggac tgtaagccta
     5401 ctttcccctc cttacctgct tctaagattc cagccctttc tcccagctct gggaaaagca
     5461 gttctctgcc ttcttctagt ggtgacagct ctaacttccc taatccacct gctactaaac
     5521 catcggttcc ttctaaccct ctcagccccc aaacaggacg atctgctccc tctgcctccc
     5581 tcatcccctc tgtctctaat ggctccttga agtttcagag ccccactcat acaggtaaag
     5641 gtcaccatct ctcattctca ctgcagactc agaatggccg agcagcccct ccttccttct
     5701 cctcctccct gcccccccct gcctccccag cttcactgaa tcaaggtgcc aagagcatca
     5761 gaaccatcca tactcctagc ctcaccagct acaaggcaca gagcggaagt tcaagcaaag
     5821 ccacccagtc cacagcaaag gaaacctctt aaaggccaaa tcctattagg cacgagtcgg
     5881 agttgcattt aagaacaaaa aaatttttaa cagtcttcga caagtgtttt cacaagagaa
     5941 tgtaacatat cgctgtactg tttgaggttt aatgctaagt atgtgctaaa tactggatta
     6001 atagatttca gtaaagcttg tttgtttttt tactttgtcg ctgttatcat tacatagtgt
     6061 ttactgtctc tattcaatac ctgttcaatg aagtaagcat gtgttaccaa aagagagtat
     6121 ggcaggagag aagggtgtgg tgagacaaga aaaaaatgta tgaagcatgt aaaacatgta
     6181 tgattccaga attttagtat gttttgtata aaaatatttt tcattacgga gactagacgt
     6241 gaacagagaa atacacaagt gtgactatac aaattgtaaa acagatacta taatatttcc
     6301 ttttatttta gtgttattta gctttattac agatttctat ttttgtcaaa acttcatggt
     6361 tcctttcgag atcttttttg ccaaaacatt ttgatactgt agcattgtac atttgaaagt
     6421 agcgtgctag acaataagcc aatgaacttc tacacaagcc aacgcagagg cacatgtaga
     6481 aggcaatgat caaccctact gcactgccat gaaaattatg tataataatt tgccggccca
     6541 agcaagctag ttttgttctg tttctttctt ttttctcttt tctaacatat tgggattctc
     6601 tggttgtttt ctttgcagta tctaaatcct tcctttgttt tctgagacct ggtaacccac
     6661 acgattgcat tgtggatttt agaatgtaca cttctgtacg gttctgtaaa ctgaccaatt
     6721 tttgtaaata tataaataga ccaaaaatac tgtatgtgac agcacataga gtagctttcc
     6781 cacaccaaag ttaattttta tgcatgcttt aaaaatatat cttgggatgg gcagaaatgg
     6841 aacttcctgg acatttttaa aaagcaacaa gtttgcacag ctagagtgtt tttgtaaata
     6901 aatgtatttg tataacacag ttatgtaata tacagaacta taagcagaga ctttgcaaaa
     6961 ctaaataaag ggctgcatgc ttattatttt ttgta
//
LOCUS       XM_032621039            5439 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X7, mRNA.
ACCESSION   XM_032621039
VERSION     XM_032621039.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5439
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5439
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             299..5260
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X7"
                     /protein_id="XP_032476930.1"
                     /db_xref="GeneID:116748129"
                     /translation="MQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPS
                     PSRIPYGGTRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSL
                     AMYRNEGFYADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQA
                     EMHMEQSLYRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQ
                     PDRVSPSRQAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRE
                     TRERMQAMEKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTAANKNHTDGAGTPQV
                     SGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQLQQMRQLQLQNQELL
                     RALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHEEEKVVRKLCDLEDFV
                     EDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTLQNKMRAILRIEVEAV
                     RFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAPAAQYVVMEKATAAEV
                     LKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQH
                     LPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEIHSVSAKNRAVSIEKA
                     ERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPQPKGDAPVDKLEP
                     SEDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDVVYTSRKENATTKAS
                     SEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEGDKIMAELQAFQKCS
                     FMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKNLEFFHEDVRKSDVEYENGPQMES
                     WKVTAGASIPSDHPKWERGMENSISDAARTSEYKTDILMKESSISTKSLLRDGRNYSQ
                     KNVSRVNSSFSGVSSLEDEINKGPKISGLPYPVCDTENQKMNYGKTKGVIQQGQENTD
                     KCHLPSPTRSTESTIRDVKTQDREVPLTEFGQVVLRPKGARPANVTPDEDGESTAGSP
                     TEESATTDSIAFMITKTAVQVLSSGEVRDIVSKQGQDVQTVNIDAKKETASQQEGTDS
                     EEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMTEEKIEEEEENGDT
                     AVQSNISQKLPKEGASGNLGAGREAESEFQPHFLSAETGISGGQEVTRTEQSKFNPAD
                     SPSSESQGDTTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEE
                     EDGTLKQHREAKRFEISGSRSEDTPKGMLRRLEQPSLESTAPISRTDEIRKNTYRTLD
                     SLEQTIKQLENTISEMSPKALVDTSCSSNRESVASSSHVAQEACPQSLLVLDEAPTAL
                     EPPSSVPSASRKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSA
                     KKAGGDCKPTFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLS
                     PQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQNGRAAPPSFSSSLPPP
                     ASPASLNQGAKSIRTIHTPSLTSYKAQSGSSSKATQSTAKETS"
ORIGIN      
        1 gaggagaaat tggcttatcg tggggaggac gtctttttat ccatgcctgt agcagcttcg
       61 ctcagaagac cggggtaaaa cagaatggtc tttactggtc gtgaacacca gggaacattt
      121 taggatctgt gtttgtgtgt gtgtgatttc ttctctgaaa agaaagctgt ctaaaatgtc
      181 cacgtgtgga accgggacat tgagatgaag ccggcaaaca aaggaatcgc gtgattgaga
      241 gctcagccaa tgtgcttttt cccggcgtta gctgcacagg tgatctcctt aagagaaaat
      301 gcagagagaa atcgtttatg caagaggaga tggccctggt gcctctcgac ctggacccac
      361 aactcttcta ccccacgcca ttccaaattc tccaccgtcc actcctgtgc cacattccat
      421 gcctccctct ccatccagaa tcccttacgg aggcacccgg ccgatggtcg ttcctggtaa
      481 cgccaccatc cccagggaca gactctccag cctgccggtc tccagatcca tctctcccag
      541 ccccagcgcc atcttggaaa gaagagacgt gaagccagat gaagacatga gctccaagag
      601 cctcgcgatg taccgaaacg agggtttcta cgccgatcct tacctttatc acgaggggag
      661 gatgagcata gcctcttcgc acggcgggca cccactggat ctccccgacc acatcatcgg
      721 gtatcaccgc gctgcagttc gttcagccag tgcttactgc agcccttctt tgcaagcgga
      781 aatgcacatg gagcagtcac tgtacagaca gaagtcaagg aagtatccag agagcctctt
      841 gcctactctg ggctccaaaa cgcccccggc ctctcctcac cgagtcagtg acctgaggat
      901 ggtggagatg cacggtctcc ataacgccca cgggccctcc cacaccatgc agccagaccg
      961 ggtctcaccc agccgccagg ccttcaaaaa ggagcccggc accttggtgt acattgagaa
     1021 gccacggacg actccaggat tagccggaat ggtggacctc ggccctcctc tagttgagaa
     1081 gcaagtgttt gcttatagca cggctacgat acccaaagac agagagacca gagagaggat
     1141 gcaagccatg gagaaacaga ttgccagttt aactggcctt gttcagtctg cgctttttaa
     1201 agggcccctt acaagtaata gcaaagatgc atctagcgag aaaatgatga aaaccgcagc
     1261 caataagaac cacacagatg gtgcaggaac tccccaggtt tccggcggga agcctcttgg
     1321 cgccctggag tcctcggggc cacgcagcca gctcccgcct gctggcacct ccgccgccca
     1381 catgagcctg ctcgacatga agaggagtgt ggccgaactc aggctccagc tgcagcagat
     1441 gcgacagctc cagctgcaga accaggagct gctgagggcg ctgatgagga aggctgagca
     1501 ggaaatcaac agcaaggtga ttgaaacgtt gaagagactg gaggaccctg tgcagcgaca
     1561 gcgggtcctg gtggaacagg agaggcagaa gtacctgcac gaggaggaaa aggttgtccg
     1621 gaagttgtgt gacctggaag acttcgttga agatttaaag aaggactctg ccttggccag
     1681 ccgcgtggtt actctaaaag atgtggaaga cggggctttc ctcctgcacc aggtgggaga
     1741 ggcagtagct tccctgaaag gagaatttcc aaccttacaa aacaagatgc gagccatcct
     1801 gcgcatagaa gtggaggccg tgcggtttct gaaggaggag ccgcacaggc tggacagtct
     1861 cctacagaga gtgcgtggca tgaccgacgc cctgaccacg ctgcgcaggc atgtcactga
     1921 tgggctcttg aagggcacag atgcggcccc ggccgcacag tatgtcgtga tggaaaaggc
     1981 cacggccgca gaagtcctga aggcccagga ggaggctccc cgcgcctcgg gccagcccct
     2041 ccccggtgcg ggcgtccccg gcgacgtgaa atcggaagtg gtacccttga cggttcacca
     2101 cgctcagagc tctcctgtgg tcatccagcc gtcccagctc tcctccgcgc tgctgaaccc
     2161 tgcccagcac ttgccagggg ggcccgggcc tcacccggcc agccctcccg ctgtcacaca
     2221 ggaggtgacc tcagctctgc agtccccgca gatgcccggg aatggttcct ccatgcagag
     2281 cctgttcatg gacgaaatcc acagtgtgag tgccaagaac agggcagtgt ctatcgagaa
     2341 agcagaaagg aaatgggaag agaaaaggca aaatctggac cactataacg gaaaagagtt
     2401 tgagaagctc ctagaagaag cccaggccaa tattatgaag tcaattccaa acctggagat
     2461 gccgccagcc tcgggcccac agccaaaggg cgatgctcca gtggacaagc tagaaccttc
     2521 agaagactct ccaaattcag aacaggactt ggacaagctg ggggctaagt ccccgcctcg
     2581 tcctccccca cctccacgga ggagctatct gccaggatcg gggctcacca ccacgaggtc
     2641 cggcgatgtg gtctacacca gcaggaagga gaatgccacc acaaaggcaa gcagtgaaga
     2701 tgctggacca agcctgcagg ctagagccac aaagtgtcca gcagaggagc ctgcttcagc
     2761 ctgggccccg tcaccaccac ctgtcactac ttcctccttc aaggatgagg aggaagaaga
     2821 aggagacaaa atcatggcag aactccaggc attccagaag tgttccttta tggatgtaaa
     2881 ttcaaacagt cacgctgagc agtcccgggc tgacagtcac cttaaagaca ctaggccggg
     2941 ggccacagcc ctccccaagg agaagaagaa tttggaattt ttccacgaag acgtacggaa
     3001 atctgatgtt gaatatgaaa atggccccca aatggaatcc tggaaggtta ccgcaggggc
     3061 ttccatacct agtgaccatc ctaagtggga aagaggaatg gagaatagta tttctgatgc
     3121 agcaagaaca tcagaataca aaactgacat cttaatgaag gaaagttcca tatccactaa
     3181 gagtttactt agagacggta gaaactattc ccagaaaaac gtgtccaggg tcaattctag
     3241 tttctctggc gttagttcct tagaagatga aatcaacaaa ggacctaaaa tctcagggct
     3301 gccgtaccct gtatgtgaca ctgagaatca gaagatgaat tatgggaaga caaagggggt
     3361 gatccagcaa ggacaagaaa atacagataa gtgtcacctt ccctctccca ctagatcaac
     3421 cgaatcgact attcgtgatg tcaaaactca agaccgagag gttcccttga cagagtttgg
     3481 ccaagttgtc ctaagaccga agggagccag gcccgctaac gtgacgcctg atgaggatgg
     3541 agagtcaacg gcaggctctc ccaccgagga gagtgcaacc accgacagca ttgccttcat
     3601 gatcaccaaa accgcggtcc aagttctctc cagcggggag gtccgcgaca tagtgagcaa
     3661 acaggggcaa gatgtacaga cggtcaacat tgacgccaaa aaagagacag cttcccagca
     3721 agaaggcact gacagcgaag agccggtcgt gtgcctggac aagaaacccg tgatcatcat
     3781 ttttgatgaa cccatggaca tccggtccgc atacaagaga ctttcaacca tatttgagga
     3841 atgcgacgag gaactggaga gaatgatgac agaggagaag atagaggaag aggaggagaa
     3901 tggagatact gcggtccaga gtaacatctc ccaaaagctt cctaaggagg gggcctcggg
     3961 caacctcgga gcagggcggg aggctgagag tgaattccag ccgcacttcc tttcagcgga
     4021 gaccggaata tcaggaggac aggaagtgac tagaaccgag cagagcaagt tcaacccagc
     4081 cgattctcca agttcagaaa gccagggcga cacgaccgac gaccagtttg aaagccccaa
     4141 gaaaaagttc aaattcaaat tcccgaaaaa gcagctcgcc gctcttacgc aagccattcg
     4201 cacgggaacc aagacgggga agaagacgtt gcaggtggtg gtctatgaag aggaggaaga
     4261 ggacggcact ttgaagcagc acagagaagc caagcgcttc gagatcagcg ggtctcgatc
     4321 cgaagacacc ccgaaaggta tgctcaggag actagagcag cccagtctgg agagcacagc
     4381 tccgatttcg agaactgatg aaatcagaaa aaatacctac aggacgttgg acagcctgga
     4441 gcagaccatc aaacagctgg aaaatacgat cagtgagatg agtcccaaag ccctagttga
     4501 tacctcgtgt tcctccaaca gagagtctgt tgcaagctca tcccacgtgg cccaggaggc
     4561 ctgtccccag tccttgctag tcctggatga agctcccact gccctagagc ccccctcgtc
     4621 tgtaccttca gcttcacgta agggccccac gggaacccct cagacgagca ggatgccgat
     4681 ccccatgagt tccaagaaca gacccggaag cctggacaaa cctggcaagc agtccaaact
     4741 gcaggacccc cgccaatatc gtcaggctaa tggaagtgct aagaaagctg gtggggactg
     4801 taagcctact ttcccctcct tacctgcttc taagattcca gccctttctc ccagctctgg
     4861 gaaaagcagt tctctgcctt cttctagtgg tgacagctct aacttcccta atccacctgc
     4921 tactaaacca tcggttcctt ctaaccctct cagcccccaa acaggacgat ctgctccctc
     4981 tgcctccctc atcccctctg tctctaatgg ctccttgaag tttcagagcc ccactcatac
     5041 aggtaaaggt caccatctct cattctcact gcagactcag aatggccgag cagcccctcc
     5101 ttccttctcc tcctccctgc ccccccctgc ctccccagct tcactgaatc aaggtgccaa
     5161 gagcatcaga accatccata ctcctagcct caccagctac aaggcacaga gcggaagttc
     5221 aagcaaagcc acccagtcca cagcaaagga aacctcttaa aggccaaatc ctattaggca
     5281 cgagtcggag ttgcatttaa gaacaaaaaa atttttaaca gtcttcgaca agtgttttca
     5341 caagagaatg taacatatcg ctgtactgtt tgaggtttaa tgctaagtat gtgctaaata
     5401 ctggattaat agatttcagt aaagcttgtt tgttttttt
//
LOCUS       XM_032621040            6331 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X8, mRNA.
ACCESSION   XM_032621040
VERSION     XM_032621040.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6331
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6331
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             227..5188
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X7"
                     /protein_id="XP_032476931.1"
                     /db_xref="GeneID:116748129"
                     /translation="MQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPS
                     PSRIPYGGTRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSL
                     AMYRNEGFYADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQA
                     EMHMEQSLYRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQ
                     PDRVSPSRQAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRE
                     TRERMQAMEKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTAANKNHTDGAGTPQV
                     SGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQLQQMRQLQLQNQELL
                     RALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHEEEKVVRKLCDLEDFV
                     EDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTLQNKMRAILRIEVEAV
                     RFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAPAAQYVVMEKATAAEV
                     LKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQH
                     LPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEIHSVSAKNRAVSIEKA
                     ERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPQPKGDAPVDKLEP
                     SEDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDVVYTSRKENATTKAS
                     SEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEGDKIMAELQAFQKCS
                     FMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKNLEFFHEDVRKSDVEYENGPQMES
                     WKVTAGASIPSDHPKWERGMENSISDAARTSEYKTDILMKESSISTKSLLRDGRNYSQ
                     KNVSRVNSSFSGVSSLEDEINKGPKISGLPYPVCDTENQKMNYGKTKGVIQQGQENTD
                     KCHLPSPTRSTESTIRDVKTQDREVPLTEFGQVVLRPKGARPANVTPDEDGESTAGSP
                     TEESATTDSIAFMITKTAVQVLSSGEVRDIVSKQGQDVQTVNIDAKKETASQQEGTDS
                     EEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMTEEKIEEEEENGDT
                     AVQSNISQKLPKEGASGNLGAGREAESEFQPHFLSAETGISGGQEVTRTEQSKFNPAD
                     SPSSESQGDTTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEE
                     EDGTLKQHREAKRFEISGSRSEDTPKGMLRRLEQPSLESTAPISRTDEIRKNTYRTLD
                     SLEQTIKQLENTISEMSPKALVDTSCSSNRESVASSSHVAQEACPQSLLVLDEAPTAL
                     EPPSSVPSASRKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSA
                     KKAGGDCKPTFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLS
                     PQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQNGRAAPPSFSSSLPPP
                     ASPASLNQGAKSIRTIHTPSLTSYKAQSGSSSKATQSTAKETS"
ORIGIN      
        1 gaaacaaaac ctctgaatgt ccgtgaaata gttttaacaa gggtggctac agctccttta
       61 aaccacatat tttgactaaa acttccctct gtaaaaaacc caagccttgc atttagttac
      121 catcaagaca ggcagagctg gaagcatttg agagatgggt ggtttcaggg tctctgcacg
      181 tctagaaagt ttcttctaga agagaacggt tcgtggaaga tgtgagatgc agagagaaat
      241 cgtttatgca agaggagatg gccctggtgc ctctcgacct ggacccacaa ctcttctacc
      301 ccacgccatt ccaaattctc caccgtccac tcctgtgcca cattccatgc ctccctctcc
      361 atccagaatc ccttacggag gcacccggcc gatggtcgtt cctggtaacg ccaccatccc
      421 cagggacaga ctctccagcc tgccggtctc cagatccatc tctcccagcc ccagcgccat
      481 cttggaaaga agagacgtga agccagatga agacatgagc tccaagagcc tcgcgatgta
      541 ccgaaacgag ggtttctacg ccgatcctta cctttatcac gaggggagga tgagcatagc
      601 ctcttcgcac ggcgggcacc cactggatct ccccgaccac atcatcgggt atcaccgcgc
      661 tgcagttcgt tcagccagtg cttactgcag cccttctttg caagcggaaa tgcacatgga
      721 gcagtcactg tacagacaga agtcaaggaa gtatccagag agcctcttgc ctactctggg
      781 ctccaaaacg cccccggcct ctcctcaccg agtcagtgac ctgaggatgg tggagatgca
      841 cggtctccat aacgcccacg ggccctccca caccatgcag ccagaccggg tctcacccag
      901 ccgccaggcc ttcaaaaagg agcccggcac cttggtgtac attgagaagc cacggacgac
      961 tccaggatta gccggaatgg tggacctcgg ccctcctcta gttgagaagc aagtgtttgc
     1021 ttatagcacg gctacgatac ccaaagacag agagaccaga gagaggatgc aagccatgga
     1081 gaaacagatt gccagtttaa ctggccttgt tcagtctgcg ctttttaaag ggccccttac
     1141 aagtaatagc aaagatgcat ctagcgagaa aatgatgaaa accgcagcca ataagaacca
     1201 cacagatggt gcaggaactc cccaggtttc cggcgggaag cctcttggcg ccctggagtc
     1261 ctcggggcca cgcagccagc tcccgcctgc tggcacctcc gccgcccaca tgagcctgct
     1321 cgacatgaag aggagtgtgg ccgaactcag gctccagctg cagcagatgc gacagctcca
     1381 gctgcagaac caggagctgc tgagggcgct gatgaggaag gctgagcagg aaatcaacag
     1441 caaggtgatt gaaacgttga agagactgga ggaccctgtg cagcgacagc gggtcctggt
     1501 ggaacaggag aggcagaagt acctgcacga ggaggaaaag gttgtccgga agttgtgtga
     1561 cctggaagac ttcgttgaag atttaaagaa ggactctgcc ttggccagcc gcgtggttac
     1621 tctaaaagat gtggaagacg gggctttcct cctgcaccag gtgggagagg cagtagcttc
     1681 cctgaaagga gaatttccaa ccttacaaaa caagatgcga gccatcctgc gcatagaagt
     1741 ggaggccgtg cggtttctga aggaggagcc gcacaggctg gacagtctcc tacagagagt
     1801 gcgtggcatg accgacgccc tgaccacgct gcgcaggcat gtcactgatg ggctcttgaa
     1861 gggcacagat gcggccccgg ccgcacagta tgtcgtgatg gaaaaggcca cggccgcaga
     1921 agtcctgaag gcccaggagg aggctccccg cgcctcgggc cagcccctcc ccggtgcggg
     1981 cgtccccggc gacgtgaaat cggaagtggt acccttgacg gttcaccacg ctcagagctc
     2041 tcctgtggtc atccagccgt cccagctctc ctccgcgctg ctgaaccctg cccagcactt
     2101 gccagggggg cccgggcctc acccggccag ccctcccgct gtcacacagg aggtgacctc
     2161 agctctgcag tccccgcaga tgcccgggaa tggttcctcc atgcagagcc tgttcatgga
     2221 cgaaatccac agtgtgagtg ccaagaacag ggcagtgtct atcgagaaag cagaaaggaa
     2281 atgggaagag aaaaggcaaa atctggacca ctataacgga aaagagtttg agaagctcct
     2341 agaagaagcc caggccaata ttatgaagtc aattccaaac ctggagatgc cgccagcctc
     2401 gggcccacag ccaaagggcg atgctccagt ggacaagcta gaaccttcag aagactctcc
     2461 aaattcagaa caggacttgg acaagctggg ggctaagtcc ccgcctcgtc ctcccccacc
     2521 tccacggagg agctatctgc caggatcggg gctcaccacc acgaggtccg gcgatgtggt
     2581 ctacaccagc aggaaggaga atgccaccac aaaggcaagc agtgaagatg ctggaccaag
     2641 cctgcaggct agagccacaa agtgtccagc agaggagcct gcttcagcct gggccccgtc
     2701 accaccacct gtcactactt cctccttcaa ggatgaggag gaagaagaag gagacaaaat
     2761 catggcagaa ctccaggcat tccagaagtg ttcctttatg gatgtaaatt caaacagtca
     2821 cgctgagcag tcccgggctg acagtcacct taaagacact aggccggggg ccacagccct
     2881 ccccaaggag aagaagaatt tggaattttt ccacgaagac gtacggaaat ctgatgttga
     2941 atatgaaaat ggcccccaaa tggaatcctg gaaggttacc gcaggggctt ccatacctag
     3001 tgaccatcct aagtgggaaa gaggaatgga gaatagtatt tctgatgcag caagaacatc
     3061 agaatacaaa actgacatct taatgaagga aagttccata tccactaaga gtttacttag
     3121 agacggtaga aactattccc agaaaaacgt gtccagggtc aattctagtt tctctggcgt
     3181 tagttcctta gaagatgaaa tcaacaaagg acctaaaatc tcagggctgc cgtaccctgt
     3241 atgtgacact gagaatcaga agatgaatta tgggaagaca aagggggtga tccagcaagg
     3301 acaagaaaat acagataagt gtcaccttcc ctctcccact agatcaaccg aatcgactat
     3361 tcgtgatgtc aaaactcaag accgagaggt tcccttgaca gagtttggcc aagttgtcct
     3421 aagaccgaag ggagccaggc ccgctaacgt gacgcctgat gaggatggag agtcaacggc
     3481 aggctctccc accgaggaga gtgcaaccac cgacagcatt gccttcatga tcaccaaaac
     3541 cgcggtccaa gttctctcca gcggggaggt ccgcgacata gtgagcaaac aggggcaaga
     3601 tgtacagacg gtcaacattg acgccaaaaa agagacagct tcccagcaag aaggcactga
     3661 cagcgaagag ccggtcgtgt gcctggacaa gaaacccgtg atcatcattt ttgatgaacc
     3721 catggacatc cggtccgcat acaagagact ttcaaccata tttgaggaat gcgacgagga
     3781 actggagaga atgatgacag aggagaagat agaggaagag gaggagaatg gagatactgc
     3841 ggtccagagt aacatctccc aaaagcttcc taaggagggg gcctcgggca acctcggagc
     3901 agggcgggag gctgagagtg aattccagcc gcacttcctt tcagcggaga ccggaatatc
     3961 aggaggacag gaagtgacta gaaccgagca gagcaagttc aacccagccg attctccaag
     4021 ttcagaaagc cagggcgaca cgaccgacga ccagtttgaa agccccaaga aaaagttcaa
     4081 attcaaattc ccgaaaaagc agctcgccgc tcttacgcaa gccattcgca cgggaaccaa
     4141 gacggggaag aagacgttgc aggtggtggt ctatgaagag gaggaagagg acggcacttt
     4201 gaagcagcac agagaagcca agcgcttcga gatcagcggg tctcgatccg aagacacccc
     4261 gaaaggtatg ctcaggagac tagagcagcc cagtctggag agcacagctc cgatttcgag
     4321 aactgatgaa atcagaaaaa atacctacag gacgttggac agcctggagc agaccatcaa
     4381 acagctggaa aatacgatca gtgagatgag tcccaaagcc ctagttgata cctcgtgttc
     4441 ctccaacaga gagtctgttg caagctcatc ccacgtggcc caggaggcct gtccccagtc
     4501 cttgctagtc ctggatgaag ctcccactgc cctagagccc ccctcgtctg taccttcagc
     4561 ttcacgtaag ggccccacgg gaacccctca gacgagcagg atgccgatcc ccatgagttc
     4621 caagaacaga cccggaagcc tggacaaacc tggcaagcag tccaaactgc aggacccccg
     4681 ccaatatcgt caggctaatg gaagtgctaa gaaagctggt ggggactgta agcctacttt
     4741 cccctcctta cctgcttcta agattccagc cctttctccc agctctggga aaagcagttc
     4801 tctgccttct tctagtggtg acagctctaa cttccctaat ccacctgcta ctaaaccatc
     4861 ggttccttct aaccctctca gcccccaaac aggacgatct gctccctctg cctccctcat
     4921 cccctctgtc tctaatggct ccttgaagtt tcagagcccc actcatacag gtaaaggtca
     4981 ccatctctca ttctcactgc agactcagaa tggccgagca gcccctcctt ccttctcctc
     5041 ctccctgccc ccccctgcct ccccagcttc actgaatcaa ggtgccaaga gcatcagaac
     5101 catccatact cctagcctca ccagctacaa ggcacagagc ggaagttcaa gcaaagccac
     5161 ccagtccaca gcaaaggaaa cctcttaaag gccaaatcct attaggcacg agtcggagtt
     5221 gcatttaaga acaaaaaaat ttttaacagt cttcgacaag tgttttcaca agagaatgta
     5281 acatatcgct gtactgtttg aggtttaatg ctaagtatgt gctaaatact ggattaatag
     5341 atttcagtaa agcttgtttg tttttttact ttgtcgctgt tatcattaca tagtgtttac
     5401 tgtctctatt caatacctgt tcaatgaagt aagcatgtgt taccaaaaga gagtatggca
     5461 ggagagaagg gtgtggtgag acaagaaaaa aatgtatgaa gcatgtaaaa catgtatgat
     5521 tccagaattt tagtatgttt tgtataaaaa tatttttcat tacggagact agacgtgaac
     5581 agagaaatac acaagtgtga ctatacaaat tgtaaaacag atactataat atttcctttt
     5641 attttagtgt tatttagctt tattacagat ttctattttt gtcaaaactt catggttcct
     5701 ttcgagatct tttttgccaa aacattttga tactgtagca ttgtacattt gaaagtagcg
     5761 tgctagacaa taagccaatg aacttctaca caagccaacg cagaggcaca tgtagaaggc
     5821 aatgatcaac cctactgcac tgccatgaaa attatgtata ataatttgcc ggcccaagca
     5881 agctagtttt gttctgtttc tttctttttt ctcttttcta acatattggg attctctggt
     5941 tgttttcttt gcagtatcta aatccttcct ttgttttctg agacctggta acccacacga
     6001 ttgcattgtg gattttagaa tgtacacttc tgtacggttc tgtaaactga ccaatttttg
     6061 taaatatata aatagaccaa aaatactgta tgtgacagca catagagtag ctttcccaca
     6121 ccaaagttaa tttttatgca tgctttaaaa atatatcttg ggatgggcag aaatggaact
     6181 tcctggacat ttttaaaaag caacaagttt gcacagctag agtgtttttg taaataaatg
     6241 tatttgtata acacagttat gtaatataca gaactataag cagagacttt gcaaaactaa
     6301 ataaagggct gcatgcttat tattttttgt a
//
LOCUS       XM_032621041            6329 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X9, mRNA.
ACCESSION   XM_032621041
VERSION     XM_032621041.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6329
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6329
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             225..5186
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X7"
                     /protein_id="XP_032476932.1"
                     /db_xref="GeneID:116748129"
                     /translation="MQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPS
                     PSRIPYGGTRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSL
                     AMYRNEGFYADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQA
                     EMHMEQSLYRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQ
                     PDRVSPSRQAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRE
                     TRERMQAMEKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTAANKNHTDGAGTPQV
                     SGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQLQQMRQLQLQNQELL
                     RALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHEEEKVVRKLCDLEDFV
                     EDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTLQNKMRAILRIEVEAV
                     RFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAPAAQYVVMEKATAAEV
                     LKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQH
                     LPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEIHSVSAKNRAVSIEKA
                     ERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPQPKGDAPVDKLEP
                     SEDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDVVYTSRKENATTKAS
                     SEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEGDKIMAELQAFQKCS
                     FMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKNLEFFHEDVRKSDVEYENGPQMES
                     WKVTAGASIPSDHPKWERGMENSISDAARTSEYKTDILMKESSISTKSLLRDGRNYSQ
                     KNVSRVNSSFSGVSSLEDEINKGPKISGLPYPVCDTENQKMNYGKTKGVIQQGQENTD
                     KCHLPSPTRSTESTIRDVKTQDREVPLTEFGQVVLRPKGARPANVTPDEDGESTAGSP
                     TEESATTDSIAFMITKTAVQVLSSGEVRDIVSKQGQDVQTVNIDAKKETASQQEGTDS
                     EEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMTEEKIEEEEENGDT
                     AVQSNISQKLPKEGASGNLGAGREAESEFQPHFLSAETGISGGQEVTRTEQSKFNPAD
                     SPSSESQGDTTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEE
                     EDGTLKQHREAKRFEISGSRSEDTPKGMLRRLEQPSLESTAPISRTDEIRKNTYRTLD
                     SLEQTIKQLENTISEMSPKALVDTSCSSNRESVASSSHVAQEACPQSLLVLDEAPTAL
                     EPPSSVPSASRKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSA
                     KKAGGDCKPTFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLS
                     PQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQNGRAAPPSFSSSLPPP
                     ASPASLNQGAKSIRTIHTPSLTSYKAQSGSSSKATQSTAKETS"
ORIGIN      
        1 acacagagcc tacctgggag ctaaggaaat gcttcctcgc tctcaccttt tgttggtaat
       61 atgttaatac ctgtctcttc tgagggctgc acaagccact tcttgttggg aacacagccc
      121 tcctagtgcc cgttcccctg gaagaaaaga gctgtgttga cagcgattgc ccacgggggt
      181 ctccggagac tgccccggcc ttcccctcct ccgtcttgtc gaggatgcag agagaaatcg
      241 tttatgcaag aggagatggc cctggtgcct ctcgacctgg acccacaact cttctacccc
      301 acgccattcc aaattctcca ccgtccactc ctgtgccaca ttccatgcct ccctctccat
      361 ccagaatccc ttacggaggc acccggccga tggtcgttcc tggtaacgcc accatcccca
      421 gggacagact ctccagcctg ccggtctcca gatccatctc tcccagcccc agcgccatct
      481 tggaaagaag agacgtgaag ccagatgaag acatgagctc caagagcctc gcgatgtacc
      541 gaaacgaggg tttctacgcc gatccttacc tttatcacga ggggaggatg agcatagcct
      601 cttcgcacgg cgggcaccca ctggatctcc ccgaccacat catcgggtat caccgcgctg
      661 cagttcgttc agccagtgct tactgcagcc cttctttgca agcggaaatg cacatggagc
      721 agtcactgta cagacagaag tcaaggaagt atccagagag cctcttgcct actctgggct
      781 ccaaaacgcc cccggcctct cctcaccgag tcagtgacct gaggatggtg gagatgcacg
      841 gtctccataa cgcccacggg ccctcccaca ccatgcagcc agaccgggtc tcacccagcc
      901 gccaggcctt caaaaaggag cccggcacct tggtgtacat tgagaagcca cggacgactc
      961 caggattagc cggaatggtg gacctcggcc ctcctctagt tgagaagcaa gtgtttgctt
     1021 atagcacggc tacgataccc aaagacagag agaccagaga gaggatgcaa gccatggaga
     1081 aacagattgc cagtttaact ggccttgttc agtctgcgct ttttaaaggg ccccttacaa
     1141 gtaatagcaa agatgcatct agcgagaaaa tgatgaaaac cgcagccaat aagaaccaca
     1201 cagatggtgc aggaactccc caggtttccg gcgggaagcc tcttggcgcc ctggagtcct
     1261 cggggccacg cagccagctc ccgcctgctg gcacctccgc cgcccacatg agcctgctcg
     1321 acatgaagag gagtgtggcc gaactcaggc tccagctgca gcagatgcga cagctccagc
     1381 tgcagaacca ggagctgctg agggcgctga tgaggaaggc tgagcaggaa atcaacagca
     1441 aggtgattga aacgttgaag agactggagg accctgtgca gcgacagcgg gtcctggtgg
     1501 aacaggagag gcagaagtac ctgcacgagg aggaaaaggt tgtccggaag ttgtgtgacc
     1561 tggaagactt cgttgaagat ttaaagaagg actctgcctt ggccagccgc gtggttactc
     1621 taaaagatgt ggaagacggg gctttcctcc tgcaccaggt gggagaggca gtagcttccc
     1681 tgaaaggaga atttccaacc ttacaaaaca agatgcgagc catcctgcgc atagaagtgg
     1741 aggccgtgcg gtttctgaag gaggagccgc acaggctgga cagtctccta cagagagtgc
     1801 gtggcatgac cgacgccctg accacgctgc gcaggcatgt cactgatggg ctcttgaagg
     1861 gcacagatgc ggccccggcc gcacagtatg tcgtgatgga aaaggccacg gccgcagaag
     1921 tcctgaaggc ccaggaggag gctccccgcg cctcgggcca gcccctcccc ggtgcgggcg
     1981 tccccggcga cgtgaaatcg gaagtggtac ccttgacggt tcaccacgct cagagctctc
     2041 ctgtggtcat ccagccgtcc cagctctcct ccgcgctgct gaaccctgcc cagcacttgc
     2101 caggggggcc cgggcctcac ccggccagcc ctcccgctgt cacacaggag gtgacctcag
     2161 ctctgcagtc cccgcagatg cccgggaatg gttcctccat gcagagcctg ttcatggacg
     2221 aaatccacag tgtgagtgcc aagaacaggg cagtgtctat cgagaaagca gaaaggaaat
     2281 gggaagagaa aaggcaaaat ctggaccact ataacggaaa agagtttgag aagctcctag
     2341 aagaagccca ggccaatatt atgaagtcaa ttccaaacct ggagatgccg ccagcctcgg
     2401 gcccacagcc aaagggcgat gctccagtgg acaagctaga accttcagaa gactctccaa
     2461 attcagaaca ggacttggac aagctggggg ctaagtcccc gcctcgtcct cccccacctc
     2521 cacggaggag ctatctgcca ggatcggggc tcaccaccac gaggtccggc gatgtggtct
     2581 acaccagcag gaaggagaat gccaccacaa aggcaagcag tgaagatgct ggaccaagcc
     2641 tgcaggctag agccacaaag tgtccagcag aggagcctgc ttcagcctgg gccccgtcac
     2701 caccacctgt cactacttcc tccttcaagg atgaggagga agaagaagga gacaaaatca
     2761 tggcagaact ccaggcattc cagaagtgtt cctttatgga tgtaaattca aacagtcacg
     2821 ctgagcagtc ccgggctgac agtcacctta aagacactag gccgggggcc acagccctcc
     2881 ccaaggagaa gaagaatttg gaatttttcc acgaagacgt acggaaatct gatgttgaat
     2941 atgaaaatgg cccccaaatg gaatcctgga aggttaccgc aggggcttcc atacctagtg
     3001 accatcctaa gtgggaaaga ggaatggaga atagtatttc tgatgcagca agaacatcag
     3061 aatacaaaac tgacatctta atgaaggaaa gttccatatc cactaagagt ttacttagag
     3121 acggtagaaa ctattcccag aaaaacgtgt ccagggtcaa ttctagtttc tctggcgtta
     3181 gttccttaga agatgaaatc aacaaaggac ctaaaatctc agggctgccg taccctgtat
     3241 gtgacactga gaatcagaag atgaattatg ggaagacaaa gggggtgatc cagcaaggac
     3301 aagaaaatac agataagtgt caccttccct ctcccactag atcaaccgaa tcgactattc
     3361 gtgatgtcaa aactcaagac cgagaggttc ccttgacaga gtttggccaa gttgtcctaa
     3421 gaccgaaggg agccaggccc gctaacgtga cgcctgatga ggatggagag tcaacggcag
     3481 gctctcccac cgaggagagt gcaaccaccg acagcattgc cttcatgatc accaaaaccg
     3541 cggtccaagt tctctccagc ggggaggtcc gcgacatagt gagcaaacag gggcaagatg
     3601 tacagacggt caacattgac gccaaaaaag agacagcttc ccagcaagaa ggcactgaca
     3661 gcgaagagcc ggtcgtgtgc ctggacaaga aacccgtgat catcattttt gatgaaccca
     3721 tggacatccg gtccgcatac aagagacttt caaccatatt tgaggaatgc gacgaggaac
     3781 tggagagaat gatgacagag gagaagatag aggaagagga ggagaatgga gatactgcgg
     3841 tccagagtaa catctcccaa aagcttccta aggagggggc ctcgggcaac ctcggagcag
     3901 ggcgggaggc tgagagtgaa ttccagccgc acttcctttc agcggagacc ggaatatcag
     3961 gaggacagga agtgactaga accgagcaga gcaagttcaa cccagccgat tctccaagtt
     4021 cagaaagcca gggcgacacg accgacgacc agtttgaaag ccccaagaaa aagttcaaat
     4081 tcaaattccc gaaaaagcag ctcgccgctc ttacgcaagc cattcgcacg ggaaccaaga
     4141 cggggaagaa gacgttgcag gtggtggtct atgaagagga ggaagaggac ggcactttga
     4201 agcagcacag agaagccaag cgcttcgaga tcagcgggtc tcgatccgaa gacaccccga
     4261 aaggtatgct caggagacta gagcagccca gtctggagag cacagctccg atttcgagaa
     4321 ctgatgaaat cagaaaaaat acctacagga cgttggacag cctggagcag accatcaaac
     4381 agctggaaaa tacgatcagt gagatgagtc ccaaagccct agttgatacc tcgtgttcct
     4441 ccaacagaga gtctgttgca agctcatccc acgtggccca ggaggcctgt ccccagtcct
     4501 tgctagtcct ggatgaagct cccactgccc tagagccccc ctcgtctgta ccttcagctt
     4561 cacgtaaggg ccccacggga acccctcaga cgagcaggat gccgatcccc atgagttcca
     4621 agaacagacc cggaagcctg gacaaacctg gcaagcagtc caaactgcag gacccccgcc
     4681 aatatcgtca ggctaatgga agtgctaaga aagctggtgg ggactgtaag cctactttcc
     4741 cctccttacc tgcttctaag attccagccc tttctcccag ctctgggaaa agcagttctc
     4801 tgccttcttc tagtggtgac agctctaact tccctaatcc acctgctact aaaccatcgg
     4861 ttccttctaa ccctctcagc ccccaaacag gacgatctgc tccctctgcc tccctcatcc
     4921 cctctgtctc taatggctcc ttgaagtttc agagccccac tcatacaggt aaaggtcacc
     4981 atctctcatt ctcactgcag actcagaatg gccgagcagc ccctccttcc ttctcctcct
     5041 ccctgccccc ccctgcctcc ccagcttcac tgaatcaagg tgccaagagc atcagaacca
     5101 tccatactcc tagcctcacc agctacaagg cacagagcgg aagttcaagc aaagccaccc
     5161 agtccacagc aaaggaaacc tcttaaaggc caaatcctat taggcacgag tcggagttgc
     5221 atttaagaac aaaaaaattt ttaacagtct tcgacaagtg ttttcacaag agaatgtaac
     5281 atatcgctgt actgtttgag gtttaatgct aagtatgtgc taaatactgg attaatagat
     5341 ttcagtaaag cttgtttgtt tttttacttt gtcgctgtta tcattacata gtgtttactg
     5401 tctctattca atacctgttc aatgaagtaa gcatgtgtta ccaaaagaga gtatggcagg
     5461 agagaagggt gtggtgagac aagaaaaaaa tgtatgaagc atgtaaaaca tgtatgattc
     5521 cagaatttta gtatgttttg tataaaaata tttttcatta cggagactag acgtgaacag
     5581 agaaatacac aagtgtgact atacaaattg taaaacagat actataatat ttccttttat
     5641 tttagtgtta tttagcttta ttacagattt ctatttttgt caaaacttca tggttccttt
     5701 cgagatcttt tttgccaaaa cattttgata ctgtagcatt gtacatttga aagtagcgtg
     5761 ctagacaata agccaatgaa cttctacaca agccaacgca gaggcacatg tagaaggcaa
     5821 tgatcaaccc tactgcactg ccatgaaaat tatgtataat aatttgccgg cccaagcaag
     5881 ctagttttgt tctgtttctt tcttttttct cttttctaac atattgggat tctctggttg
     5941 ttttctttgc agtatctaaa tccttccttt gttttctgag acctggtaac ccacacgatt
     6001 gcattgtgga ttttagaatg tacacttctg tacggttctg taaactgacc aatttttgta
     6061 aatatataaa tagaccaaaa atactgtatg tgacagcaca tagagtagct ttcccacacc
     6121 aaagttaatt tttatgcatg ctttaaaaat atatcttggg atgggcagaa atggaacttc
     6181 ctggacattt ttaaaaagca acaagtttgc acagctagag tgtttttgta aataaatgta
     6241 tttgtataac acagttatgt aatatacaga actataagca gagactttgc aaaactaaat
     6301 aaagggctgc atgcttatta ttttttgta
//
LOCUS       XM_032621042            5320 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X10, mRNA.
ACCESSION   XM_032621042
VERSION     XM_032621042.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5320
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5320
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 long SRA reads, 1
                     Protein, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             283..5139
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X8"
                     /protein_id="XP_032476933.1"
                     /db_xref="GeneID:116748129"
                     /translation="MQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPS
                     PSRIPYGGTRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSL
                     AMYRNEGFYADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQA
                     EMHMEQSLYRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQ
                     PDRVSPSRQAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRE
                     TSEKMMKTAANKNHTDGAGTPQVSGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKR
                     SVAELRLQLQQMRQLQLQNQELLRALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQ
                     ERQKYLHEEEKVVRKLCDLEDFVEDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVAS
                     LKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGL
                     LKGTDAAPAAQYVVMEKATAAEVLKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHH
                     AQSSPVVIQPSQLSSALLNPAQHLPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSM
                     QSLFMDEIHSVSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIP
                     NLEMPPASGPQPKGDAPVDKLEPSEDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSG
                     LTTTRSGDVVYTSRKENATTKASSEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSS
                     FKDEEEEEGDKIMAELQAFQKCSFMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKN
                     LEFFHEDVRKSDVEYENGPQMESWKVTAGASIPSDHPKWERGMENSISDAARTSEYKT
                     DILMKESSISTKSLLRDGRNYSQKNVSRVNSSFSGVSSLEDEINKGPKISGLPYPVCD
                     TENQKMNYGKTKGVIQQGQENTDKCHLPSPTRSTESTIRDVKTQDREVPLTEFGQVVL
                     RPKGARPANVTPDEDGESTAGSPTEESATTDSIAFMITKTAVQVLSSGEVRDIVSKQG
                     QDVQTVNIDAKKETASQQEGTDSEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEE
                     CDEELERMMTEEKIEEEEENGDTAVQSNISQKLPKEGASGNLGAGREAESEFQPHFLS
                     AETGISGGQEVTRTEQSKFNPADSPSSESQGDTTDDQFESPKKKFKFKFPKKQLAALT
                     QAIRTGTKTGKKTLQVVVYEEEEEDGTLKQHREAKRFEISGSRSEDTPKGMLRRLEQP
                     SLESTAPISRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSCSSNRESVAS
                     SSHVAQEACPQSLLVLDEAPTALEPPSSVPSASRKGPTGTPQTSRMPIPMSSKNRPGS
                     LDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPTFPSLPASKIPALSPSSGKSSSLPSS
                     SGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHHL
                     SFSLQTQNGRAAPPSFSSSLPPPASPASLNQGAKSIRTIHTPSLTSYKAQSGSSSKAT
                     QSTAKETS"
ORIGIN      
        1 atcgtgggga ggacgtcttt ttatccatgc ctgtagcagc ttcgctcaga agaccggggt
       61 aaaacagaat ggtctttact ggtcgtgaac accagggaac attttaggat ctgtgtttgt
      121 gtgtgtgtga tttcttctct gaaaagaaag ctgtctaaaa tgtccacgtg tggaaccggg
      181 acattgagat gaagccggca aacaaaggaa tcgcgtgatt gagagctcag ccaatgtgct
      241 ttttcccggc gttagctgca caggtgatct ccttaagaga aaatgcagag agaaatcgtt
      301 tatgcaagag gagatggccc tggtgcctct cgacctggac ccacaactct tctaccccac
      361 gccattccaa attctccacc gtccactcct gtgccacatt ccatgcctcc ctctccatcc
      421 agaatccctt acggaggcac ccggccgatg gtcgttcctg gtaacgccac catccccagg
      481 gacagactct ccagcctgcc ggtctccaga tccatctctc ccagccccag cgccatcttg
      541 gaaagaagag acgtgaagcc agatgaagac atgagctcca agagcctcgc gatgtaccga
      601 aacgagggtt tctacgccga tccttacctt tatcacgagg ggaggatgag catagcctct
      661 tcgcacggcg ggcacccact ggatctcccc gaccacatca tcgggtatca ccgcgctgca
      721 gttcgttcag ccagtgctta ctgcagccct tctttgcaag cggaaatgca catggagcag
      781 tcactgtaca gacagaagtc aaggaagtat ccagagagcc tcttgcctac tctgggctcc
      841 aaaacgcccc cggcctctcc tcaccgagtc agtgacctga ggatggtgga gatgcacggt
      901 ctccataacg cccacgggcc ctcccacacc atgcagccag accgggtctc acccagccgc
      961 caggccttca aaaaggagcc cggcaccttg gtgtacattg agaagccacg gacgactcca
     1021 ggattagccg gaatggtgga cctcggccct cctctagttg agaagcaagt gtttgcttat
     1081 agcacggcta cgatacccaa agacagagag accagcgaga aaatgatgaa aaccgcagcc
     1141 aataagaacc acacagatgg tgcaggaact ccccaggttt ccggcgggaa gcctcttggc
     1201 gccctggagt cctcggggcc acgcagccag ctcccgcctg ctggcacctc cgccgcccac
     1261 atgagcctgc tcgacatgaa gaggagtgtg gccgaactca ggctccagct gcagcagatg
     1321 cgacagctcc agctgcagaa ccaggagctg ctgagggcgc tgatgaggaa ggctgagcag
     1381 gaaatcaaca gcaaggtgat tgaaacgttg aagagactgg aggaccctgt gcagcgacag
     1441 cgggtcctgg tggaacagga gaggcagaag tacctgcacg aggaggaaaa ggttgtccgg
     1501 aagttgtgtg acctggaaga cttcgttgaa gatttaaaga aggactctgc cttggccagc
     1561 cgcgtggtta ctctaaaaga tgtggaagac ggggctttcc tcctgcacca ggtgggagag
     1621 gcagtagctt ccctgaaagg agaatttcca accttacaaa acaagatgcg agccatcctg
     1681 cgcatagaag tggaggccgt gcggtttctg aaggaggagc cgcacaggct ggacagtctc
     1741 ctacagagag tgcgtggcat gaccgacgcc ctgaccacgc tgcgcaggca tgtcactgat
     1801 gggctcttga agggcacaga tgcggccccg gccgcacagt atgtcgtgat ggaaaaggcc
     1861 acggccgcag aagtcctgaa ggcccaggag gaggctcccc gcgcctcggg ccagcccctc
     1921 cccggtgcgg gcgtccccgg cgacgtgaaa tcggaagtgg tacccttgac ggttcaccac
     1981 gctcagagct ctcctgtggt catccagccg tcccagctct cctccgcgct gctgaaccct
     2041 gcccagcact tgccaggggg gcccgggcct cacccggcca gccctcccgc tgtcacacag
     2101 gaggtgacct cagctctgca gtccccgcag atgcccggga atggttcctc catgcagagc
     2161 ctgttcatgg acgaaatcca cagtgtgagt gccaagaaca gggcagtgtc tatcgagaaa
     2221 gcagaaagga aatgggaaga gaaaaggcaa aatctggacc actataacgg aaaagagttt
     2281 gagaagctcc tagaagaagc ccaggccaat attatgaagt caattccaaa cctggagatg
     2341 ccgccagcct cgggcccaca gccaaagggc gatgctccag tggacaagct agaaccttca
     2401 gaagactctc caaattcaga acaggacttg gacaagctgg gggctaagtc cccgcctcgt
     2461 cctcccccac ctccacggag gagctatctg ccaggatcgg ggctcaccac cacgaggtcc
     2521 ggcgatgtgg tctacaccag caggaaggag aatgccacca caaaggcaag cagtgaagat
     2581 gctggaccaa gcctgcaggc tagagccaca aagtgtccag cagaggagcc tgcttcagcc
     2641 tgggccccgt caccaccacc tgtcactact tcctccttca aggatgagga ggaagaagaa
     2701 ggagacaaaa tcatggcaga actccaggca ttccagaagt gttcctttat ggatgtaaat
     2761 tcaaacagtc acgctgagca gtcccgggct gacagtcacc ttaaagacac taggccgggg
     2821 gccacagccc tccccaagga gaagaagaat ttggaatttt tccacgaaga cgtacggaaa
     2881 tctgatgttg aatatgaaaa tggcccccaa atggaatcct ggaaggttac cgcaggggct
     2941 tccataccta gtgaccatcc taagtgggaa agaggaatgg agaatagtat ttctgatgca
     3001 gcaagaacat cagaatacaa aactgacatc ttaatgaagg aaagttccat atccactaag
     3061 agtttactta gagacggtag aaactattcc cagaaaaacg tgtccagggt caattctagt
     3121 ttctctggcg ttagttcctt agaagatgaa atcaacaaag gacctaaaat ctcagggctg
     3181 ccgtaccctg tatgtgacac tgagaatcag aagatgaatt atgggaagac aaagggggtg
     3241 atccagcaag gacaagaaaa tacagataag tgtcaccttc cctctcccac tagatcaacc
     3301 gaatcgacta ttcgtgatgt caaaactcaa gaccgagagg ttcccttgac agagtttggc
     3361 caagttgtcc taagaccgaa gggagccagg cccgctaacg tgacgcctga tgaggatgga
     3421 gagtcaacgg caggctctcc caccgaggag agtgcaacca ccgacagcat tgccttcatg
     3481 atcaccaaaa ccgcggtcca agttctctcc agcggggagg tccgcgacat agtgagcaaa
     3541 caggggcaag atgtacagac ggtcaacatt gacgccaaaa aagagacagc ttcccagcaa
     3601 gaaggcactg acagcgaaga gccggtcgtg tgcctggaca agaaacccgt gatcatcatt
     3661 tttgatgaac ccatggacat ccggtccgca tacaagagac tttcaaccat atttgaggaa
     3721 tgcgacgagg aactggagag aatgatgaca gaggagaaga tagaggaaga ggaggagaat
     3781 ggagatactg cggtccagag taacatctcc caaaagcttc ctaaggaggg ggcctcgggc
     3841 aacctcggag cagggcggga ggctgagagt gaattccagc cgcacttcct ttcagcggag
     3901 accggaatat caggaggaca ggaagtgact agaaccgagc agagcaagtt caacccagcc
     3961 gattctccaa gttcagaaag ccagggcgac acgaccgacg accagtttga aagccccaag
     4021 aaaaagttca aattcaaatt cccgaaaaag cagctcgccg ctcttacgca agccattcgc
     4081 acgggaacca agacggggaa gaagacgttg caggtggtgg tctatgaaga ggaggaagag
     4141 gacggcactt tgaagcagca cagagaagcc aagcgcttcg agatcagcgg gtctcgatcc
     4201 gaagacaccc cgaaaggtat gctcaggaga ctagagcagc ccagtctgga gagcacagct
     4261 ccgatttcga gaactgatga aatcagaaaa aatacctaca ggacgttgga cagcctggag
     4321 cagaccatca aacagctgga aaatacgatc agtgagatga gtcccaaagc cctagttgat
     4381 acctcgtgtt cctccaacag agagtctgtt gcaagctcat cccacgtggc ccaggaggcc
     4441 tgtccccagt ccttgctagt cctggatgaa gctcccactg ccctagagcc cccctcgtct
     4501 gtaccttcag cttcacgtaa gggccccacg ggaacccctc agacgagcag gatgccgatc
     4561 cccatgagtt ccaagaacag acccggaagc ctggacaaac ctggcaagca gtccaaactg
     4621 caggaccccc gccaatatcg tcaggctaat ggaagtgcta agaaagctgg tggggactgt
     4681 aagcctactt tcccctcctt acctgcttct aagattccag ccctttctcc cagctctggg
     4741 aaaagcagtt ctctgccttc ttctagtggt gacagctcta acttccctaa tccacctgct
     4801 actaaaccat cggttccttc taaccctctc agcccccaaa caggacgatc tgctccctct
     4861 gcctccctca tcccctctgt ctctaatggc tccttgaagt ttcagagccc cactcataca
     4921 ggtaaaggtc accatctctc attctcactg cagactcaga atggccgagc agcccctcct
     4981 tccttctcct cctccctgcc cccccctgcc tccccagctt cactgaatca aggtgccaag
     5041 agcatcagaa ccatccatac tcctagcctc accagctaca aggcacagag cggaagttca
     5101 agcaaagcca cccagtccac agcaaaggaa acctcttaaa ggccaaatcc tattaggcac
     5161 gagtcggagt tgcatttaag aacaaaaaaa tttttaacag tcttcgacaa gtgttttcac
     5221 aagagaatgt aacatatcgc tgtactgttt gaggtttaat gctaagtatg tgctaaatac
     5281 tggattaata gatttcagta aagcttgttt gtttttttac
//
LOCUS       XM_032621043            5240 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X11, mRNA.
ACCESSION   XM_032621043
VERSION     XM_032621043.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5240
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5240
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116748129"
     CDS             236..5059
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X9"
                     /protein_id="XP_032476934.1"
                     /db_xref="GeneID:116748129"
                     /translation="MQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPS
                     PSRIPYGGTRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSL
                     AMYRNEGFYADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQA
                     EMHMEQSLYRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQ
                     PDRVSPSRQAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRE
                     TSEKMMKTAANKNHTDGAGTPQVSGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKR
                     SVAELRLQLQQMRQLQLQNQELLRALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQ
                     ERQKYLHEEEKVVRKLCDLEDFVEDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVAS
                     LKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGL
                     LKGTDAAPAAQYVVMEKATAAEVLKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHH
                     AQSSPVVIQPSQLSSALLNPAQHLPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSM
                     QSLFMDEIHSKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPQ
                     PKGDAPVDKLEPSEDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDVVY
                     TSRKENATTKASSEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEGDK
                     IMAELQAFQKCSFMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKNLEFFHEDVRKS
                     DVEYENGPQMESWKVTAGASIPSDHPKWERGMENSISDAARTSEYKTDILMKESSIST
                     KSLLRDGRNYSQKNVSRVNSSFSGVSSLEDEINKGPKISGLPYPVCDTENQKMNYGKT
                     KGVIQQGQENTDKCHLPSPTRSTESTIRDVKTQDREVPLTEFGQVVLRPKGARPANVT
                     PDEDGESTAGSPTEESATTDSIAFMITKTAVQVLSSGEVRDIVSKQGQDVQTVNIDAK
                     KETASQQEGTDSEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMTE
                     EKIEEEEENGDTAVQSNISQKLPKEGASGNLGAGREAESEFQPHFLSAETGISGGQEV
                     TRTEQSKFNPADSPSSESQGDTTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGK
                     KTLQVVVYEEEEEDGTLKQHREAKRFEISGSRSEDTPKGMLRRLEQPSLESTAPISRT
                     DEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSCSSNRESVASSSHVAQEACPQ
                     SLLVLDEAPTALEPPSSVPSASRKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQSKLQ
                     DPRQYRQANGSAKKAGGDCKPTFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPP
                     ATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQNGRA
                     APPSFSSSLPPPASPASLNQGAKSIRTIHTPSLTSYKAQSGSSSKATQSTAKETS"
ORIGIN      
        1 agaagaccgg ggtaaaacag aatggtcttt actggtcgtg aacaccaggg aacattttag
       61 gatctgtgtt tgtgtgtgtg tgatttcttc tctgaaaaga aagctgtcta aaatgtccac
      121 gtgtggaacc gggacattga gatgaagccg gcaaacaaag gaatcgcgtg attgagagct
      181 cagccaatgt gctttttccc ggcgttagct gcacaggtga tctccttaag agaaaatgca
      241 gagagaaatc gtttatgcaa gaggagatgg ccctggtgcc tctcgacctg gacccacaac
      301 tcttctaccc cacgccattc caaattctcc accgtccact cctgtgccac attccatgcc
      361 tccctctcca tccagaatcc cttacggagg cacccggccg atggtcgttc ctggtaacgc
      421 caccatcccc agggacagac tctccagcct gccggtctcc agatccatct ctcccagccc
      481 cagcgccatc ttggaaagaa gagacgtgaa gccagatgaa gacatgagct ccaagagcct
      541 cgcgatgtac cgaaacgagg gtttctacgc cgatccttac ctttatcacg aggggaggat
      601 gagcatagcc tcttcgcacg gcgggcaccc actggatctc cccgaccaca tcatcgggta
      661 tcaccgcgct gcagttcgtt cagccagtgc ttactgcagc ccttctttgc aagcggaaat
      721 gcacatggag cagtcactgt acagacagaa gtcaaggaag tatccagaga gcctcttgcc
      781 tactctgggc tccaaaacgc ccccggcctc tcctcaccga gtcagtgacc tgaggatggt
      841 ggagatgcac ggtctccata acgcccacgg gccctcccac accatgcagc cagaccgggt
      901 ctcacccagc cgccaggcct tcaaaaagga gcccggcacc ttggtgtaca ttgagaagcc
      961 acggacgact ccaggattag ccggaatggt ggacctcggc cctcctctag ttgagaagca
     1021 agtgtttgct tatagcacgg ctacgatacc caaagacaga gagaccagcg agaaaatgat
     1081 gaaaaccgca gccaataaga accacacaga tggtgcagga actccccagg tttccggcgg
     1141 gaagcctctt ggcgccctgg agtcctcggg gccacgcagc cagctcccgc ctgctggcac
     1201 ctccgccgcc cacatgagcc tgctcgacat gaagaggagt gtggccgaac tcaggctcca
     1261 gctgcagcag atgcgacagc tccagctgca gaaccaggag ctgctgaggg cgctgatgag
     1321 gaaggctgag caggaaatca acagcaaggt gattgaaacg ttgaagagac tggaggaccc
     1381 tgtgcagcga cagcgggtcc tggtggaaca ggagaggcag aagtacctgc acgaggagga
     1441 aaaggttgtc cggaagttgt gtgacctgga agacttcgtt gaagatttaa agaaggactc
     1501 tgccttggcc agccgcgtgg ttactctaaa agatgtggaa gacggggctt tcctcctgca
     1561 ccaggtggga gaggcagtag cttccctgaa aggagaattt ccaaccttac aaaacaagat
     1621 gcgagccatc ctgcgcatag aagtggaggc cgtgcggttt ctgaaggagg agccgcacag
     1681 gctggacagt ctcctacaga gagtgcgtgg catgaccgac gccctgacca cgctgcgcag
     1741 gcatgtcact gatgggctct tgaagggcac agatgcggcc ccggccgcac agtatgtcgt
     1801 gatggaaaag gccacggccg cagaagtcct gaaggcccag gaggaggctc cccgcgcctc
     1861 gggccagccc ctccccggtg cgggcgtccc cggcgacgtg aaatcggaag tggtaccctt
     1921 gacggttcac cacgctcaga gctctcctgt ggtcatccag ccgtcccagc tctcctccgc
     1981 gctgctgaac cctgcccagc acttgccagg ggggcccggg cctcacccgg ccagccctcc
     2041 cgctgtcaca caggaggtga cctcagctct gcagtccccg cagatgcccg ggaatggttc
     2101 ctccatgcag agcctgttca tggacgaaat ccacagtaaa gcagaaagga aatgggaaga
     2161 gaaaaggcaa aatctggacc actataacgg aaaagagttt gagaagctcc tagaagaagc
     2221 ccaggccaat attatgaagt caattccaaa cctggagatg ccgccagcct cgggcccaca
     2281 gccaaagggc gatgctccag tggacaagct agaaccttca gaagactctc caaattcaga
     2341 acaggacttg gacaagctgg gggctaagtc cccgcctcgt cctcccccac ctccacggag
     2401 gagctatctg ccaggatcgg ggctcaccac cacgaggtcc ggcgatgtgg tctacaccag
     2461 caggaaggag aatgccacca caaaggcaag cagtgaagat gctggaccaa gcctgcaggc
     2521 tagagccaca aagtgtccag cagaggagcc tgcttcagcc tgggccccgt caccaccacc
     2581 tgtcactact tcctccttca aggatgagga ggaagaagaa ggagacaaaa tcatggcaga
     2641 actccaggca ttccagaagt gttcctttat ggatgtaaat tcaaacagtc acgctgagca
     2701 gtcccgggct gacagtcacc ttaaagacac taggccgggg gccacagccc tccccaagga
     2761 gaagaagaat ttggaatttt tccacgaaga cgtacggaaa tctgatgttg aatatgaaaa
     2821 tggcccccaa atggaatcct ggaaggttac cgcaggggct tccataccta gtgaccatcc
     2881 taagtgggaa agaggaatgg agaatagtat ttctgatgca gcaagaacat cagaatacaa
     2941 aactgacatc ttaatgaagg aaagttccat atccactaag agtttactta gagacggtag
     3001 aaactattcc cagaaaaacg tgtccagggt caattctagt ttctctggcg ttagttcctt
     3061 agaagatgaa atcaacaaag gacctaaaat ctcagggctg ccgtaccctg tatgtgacac
     3121 tgagaatcag aagatgaatt atgggaagac aaagggggtg atccagcaag gacaagaaaa
     3181 tacagataag tgtcaccttc cctctcccac tagatcaacc gaatcgacta ttcgtgatgt
     3241 caaaactcaa gaccgagagg ttcccttgac agagtttggc caagttgtcc taagaccgaa
     3301 gggagccagg cccgctaacg tgacgcctga tgaggatgga gagtcaacgg caggctctcc
     3361 caccgaggag agtgcaacca ccgacagcat tgccttcatg atcaccaaaa ccgcggtcca
     3421 agttctctcc agcggggagg tccgcgacat agtgagcaaa caggggcaag atgtacagac
     3481 ggtcaacatt gacgccaaaa aagagacagc ttcccagcaa gaaggcactg acagcgaaga
     3541 gccggtcgtg tgcctggaca agaaacccgt gatcatcatt tttgatgaac ccatggacat
     3601 ccggtccgca tacaagagac tttcaaccat atttgaggaa tgcgacgagg aactggagag
     3661 aatgatgaca gaggagaaga tagaggaaga ggaggagaat ggagatactg cggtccagag
     3721 taacatctcc caaaagcttc ctaaggaggg ggcctcgggc aacctcggag cagggcggga
     3781 ggctgagagt gaattccagc cgcacttcct ttcagcggag accggaatat caggaggaca
     3841 ggaagtgact agaaccgagc agagcaagtt caacccagcc gattctccaa gttcagaaag
     3901 ccagggcgac acgaccgacg accagtttga aagccccaag aaaaagttca aattcaaatt
     3961 cccgaaaaag cagctcgccg ctcttacgca agccattcgc acgggaacca agacggggaa
     4021 gaagacgttg caggtggtgg tctatgaaga ggaggaagag gacggcactt tgaagcagca
     4081 cagagaagcc aagcgcttcg agatcagcgg gtctcgatcc gaagacaccc cgaaaggtat
     4141 gctcaggaga ctagagcagc ccagtctgga gagcacagct ccgatttcga gaactgatga
     4201 aatcagaaaa aatacctaca ggacgttgga cagcctggag cagaccatca aacagctgga
     4261 aaatacgatc agtgagatga gtcccaaagc cctagttgat acctcgtgtt cctccaacag
     4321 agagtctgtt gcaagctcat cccacgtggc ccaggaggcc tgtccccagt ccttgctagt
     4381 cctggatgaa gctcccactg ccctagagcc cccctcgtct gtaccttcag cttcacgtaa
     4441 gggccccacg ggaacccctc agacgagcag gatgccgatc cccatgagtt ccaagaacag
     4501 acccggaagc ctggacaaac ctggcaagca gtccaaactg caggaccccc gccaatatcg
     4561 tcaggctaat ggaagtgcta agaaagctgg tggggactgt aagcctactt tcccctcctt
     4621 acctgcttct aagattccag ccctttctcc cagctctggg aaaagcagtt ctctgccttc
     4681 ttctagtggt gacagctcta acttccctaa tccacctgct actaaaccat cggttccttc
     4741 taaccctctc agcccccaaa caggacgatc tgctccctct gcctccctca tcccctctgt
     4801 ctctaatggc tccttgaagt ttcagagccc cactcataca ggtaaaggtc accatctctc
     4861 attctcactg cagactcaga atggccgagc agcccctcct tccttctcct cctccctgcc
     4921 cccccctgcc tccccagctt cactgaatca aggtgccaag agcatcagaa ccatccatac
     4981 tcctagcctc accagctaca aggcacagag cggaagttca agcaaagcca cccagtccac
     5041 agcaaaggaa acctcttaaa ggccaaatcc tattaggcac gagtcggagt tgcatttaag
     5101 aacaaaaaaa tttttaacag tcttcgacaa gtgttttcac aagagaatgt aacatatcgc
     5161 tgtactgttt gaggtttaat gctaagtatg tgctaaatac tggattaata gatttcagta
     5221 aagcttgttt gtttttttac
//
LOCUS       XM_032621044            5590 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X12, mRNA.
ACCESSION   XM_032621044
VERSION     XM_032621044.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5590
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5590
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 long SRA reads, 2
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             344..4447
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X10"
                     /protein_id="XP_032476935.1"
                     /db_xref="GeneID:116748129"
                     /translation="MEENESQKCEPCLPYSADSRQMQEQGKSNSQVASLEDAECRRTK
                     ERLSNGNSRVSASKSSRNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYP
                     HHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPF
                     SRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAF
                     PQQLTMKMLESPSVAIYIKDESRNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKT
                     VNGDVRMQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGG
                     TRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGF
                     YADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSL
                     YRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSR
                     QAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRETSEKMMKT
                     AANKNHTDGAGTPQVSGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQ
                     LQQMRQLQLQNQELLRALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHE
                     EEKVVRKLCDLEDFVEDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTL
                     QNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAP
                     AAQYVVMEKATAAEVLKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVI
                     QPSQLSSALLNPAQHLPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEI
                     HSVSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPAS
                     GPQPKGDAPVDKLEPSDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDV
                     VYTSRKENATTKASSEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEG
                     DKIMAELQAFQKCSFMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKNLEFFHEDVR
                     KSDVEYENGPQMESWKGPTGTPQTSRMPIPMSSKNRPGSLDKPGKQSKLQDPRQYRQA
                     NGSAKKAGGDCKPTFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPS
                     NPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHHLSFSLQTQNGRAAPPSFSSS
                     LPPPASPASLNQGAKSIRTIHTPSLTSYKAQSGSSSKATQSTAKETS"
     misc_feature    905..>1141
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 gggcaggaga gcgcatcacc tgttggggcc tacgggagcg cgcggcgcgg ggctggcctg
       61 ggcacagccc gcgttcctcg ggggcccggc ccgcgggcgg gcggacagac ggacggacgc
      121 ggggacgcgt gcgcgggggg acgccggagg cccggcgctg gaatgcagtt ttccccggcg
      181 agagagactt tgtaccggag tggagagtag tttggggtgg ggtttcgcac cgttccctcc
      241 tccccacccc cgggccccct tccaggcgct ttctgggagc tttttcagaa ctgcgctctg
      301 aagtttaaag atcagcgaag ggcctgggcc gtaggcaggg acaatggaag aaaatgaaag
      361 ccagaaatgt gagccgtgcc ttccttactc agcagacagc agacagatgc aggaacaagg
      421 aaagagcaat tcgcaggtag catccttaga agatgcagaa tgtcgcagaa ccaaggaacg
      481 cctttctaat ggaaacagtc gcgtttcagc ttccaaatct tcccgaaaca tcccaaggag
      541 acacactcta ggtggacctc gaagttccaa agaaatactg ggaatgcaaa catcagagat
      601 ggatcgtaag agagaagctt tcctagaaca tctaaagcag aaataccccc atcatgccac
      661 agccatcatg ggccaccaag agaggctgag agaccagaca agaagcccca aactgtctca
      721 cagtcctcag cctcccaact tgggtgaccc agtagagcat ttatcagagg catctggaga
      781 ttctttggaa gccatgtctg agggagaaac tccaagtcct ttttccagag gcagccggac
      841 tcgagcgagc cttccagtgg tgaggtcgac caaccagacg aaagaaagat ctctgggggt
      901 tctttatctc cagtacggag atgaaaccaa gcagctcagg atgccgaatg aaattacaag
      961 tgcagacaca atccgtgctc tcttcgtaag tgcctttcca cagcagctca ccatgaaaat
     1021 gctggagtcg cccagtgtcg ccatttacat caaagatgaa agcagaaatg tctattatga
     1081 gttaagtgat gtcaggaaca ttcaggacag atcccttctc aaagtgtaca acaaggatcc
     1141 tgcccatgca ttcaaccaca caccgaaaac tgtgaacgga gacgtgagga tgcagagaga
     1201 aatcgtttat gcaagaggag atggccctgg tgcctctcga cctggaccca caactcttct
     1261 accccacgcc attccaaatt ctccaccgtc cactcctgtg ccacattcca tgcctccctc
     1321 tccatccaga atcccttacg gaggcacccg gccgatggtc gttcctggta acgccaccat
     1381 ccccagggac agactctcca gcctgccggt ctccagatcc atctctccca gccccagcgc
     1441 catcttggaa agaagagacg tgaagccaga tgaagacatg agctccaaga gcctcgcgat
     1501 gtaccgaaac gagggtttct acgccgatcc ttacctttat cacgagggga ggatgagcat
     1561 agcctcttcg cacggcgggc acccactgga tctccccgac cacatcatcg ggtatcaccg
     1621 cgctgcagtt cgttcagcca gtgcttactg cagcccttct ttgcaagcgg aaatgcacat
     1681 ggagcagtca ctgtacagac agaagtcaag gaagtatcca gagagcctct tgcctactct
     1741 gggctccaaa acgcccccgg cctctcctca ccgagtcagt gacctgagga tggtggagat
     1801 gcacggtctc cataacgccc acgggccctc ccacaccatg cagccagacc gggtctcacc
     1861 cagccgccag gccttcaaaa aggagcccgg caccttggtg tacattgaga agccacggac
     1921 gactccagga ttagccggaa tggtggacct cggccctcct ctagttgaga agcaagtgtt
     1981 tgcttatagc acggctacga tacccaaaga cagagagacc agcgagaaaa tgatgaaaac
     2041 cgcagccaat aagaaccaca cagatggtgc aggaactccc caggtttccg gcgggaagcc
     2101 tcttggcgcc ctggagtcct cggggccacg cagccagctc ccgcctgctg gcacctccgc
     2161 cgcccacatg agcctgctcg acatgaagag gagtgtggcc gaactcaggc tccagctgca
     2221 gcagatgcga cagctccagc tgcagaacca ggagctgctg agggcgctga tgaggaaggc
     2281 tgagcaggaa atcaacagca aggtgattga aacgttgaag agactggagg accctgtgca
     2341 gcgacagcgg gtcctggtgg aacaggagag gcagaagtac ctgcacgagg aggaaaaggt
     2401 tgtccggaag ttgtgtgacc tggaagactt cgttgaagat ttaaagaagg actctgcctt
     2461 ggccagccgc gtggttactc taaaagatgt ggaagacggg gctttcctcc tgcaccaggt
     2521 gggagaggca gtagcttccc tgaaaggaga atttccaacc ttacaaaaca agatgcgagc
     2581 catcctgcgc atagaagtgg aggccgtgcg gtttctgaag gaggagccgc acaggctgga
     2641 cagtctccta cagagagtgc gtggcatgac cgacgccctg accacgctgc gcaggcatgt
     2701 cactgatggg ctcttgaagg gcacagatgc ggccccggcc gcacagtatg tcgtgatgga
     2761 aaaggccacg gccgcagaag tcctgaaggc ccaggaggag gctccccgcg cctcgggcca
     2821 gcccctcccc ggtgcgggcg tccccggcga cgtgaaatcg gaagtggtac ccttgacggt
     2881 tcaccacgct cagagctctc ctgtggtcat ccagccgtcc cagctctcct ccgcgctgct
     2941 gaaccctgcc cagcacttgc caggggggcc cgggcctcac ccggccagcc ctcccgctgt
     3001 cacacaggag gtgacctcag ctctgcagtc cccgcagatg cccgggaatg gttcctccat
     3061 gcagagcctg ttcatggacg aaatccacag tgtgagtgcc aagaacaggg cagtgtctat
     3121 cgagaaagca gaaaggaaat gggaagagaa aaggcaaaat ctggaccact ataacggaaa
     3181 agagtttgag aagctcctag aagaagccca ggccaatatt atgaagtcaa ttccaaacct
     3241 ggagatgccg ccagcctcgg gcccacagcc aaagggcgat gctccagtgg acaagctaga
     3301 accttcagac tctccaaatt cagaacagga cttggacaag ctgggggcta agtccccgcc
     3361 tcgtcctccc ccacctccac ggaggagcta tctgccagga tcggggctca ccaccacgag
     3421 gtccggcgat gtggtctaca ccagcaggaa ggagaatgcc accacaaagg caagcagtga
     3481 agatgctgga ccaagcctgc aggctagagc cacaaagtgt ccagcagagg agcctgcttc
     3541 agcctgggcc ccgtcaccac cacctgtcac tacttcctcc ttcaaggatg aggaggaaga
     3601 agaaggagac aaaatcatgg cagaactcca ggcattccag aagtgttcct ttatggatgt
     3661 aaattcaaac agtcacgctg agcagtcccg ggctgacagt caccttaaag acactaggcc
     3721 gggggccaca gccctcccca aggagaagaa gaatttggaa tttttccacg aagacgtacg
     3781 gaaatctgat gttgaatatg aaaatggccc ccaaatggaa tcctggaagg gccccacggg
     3841 aacccctcag acgagcagga tgccgatccc catgagttcc aagaacagac ccggaagcct
     3901 ggacaaacct ggcaagcagt ccaaactgca ggacccccgc caatatcgtc aggctaatgg
     3961 aagtgctaag aaagctggtg gggactgtaa gcctactttc ccctccttac ctgcttctaa
     4021 gattccagcc ctttctccca gctctgggaa aagcagttct ctgccttctt ctagtggtga
     4081 cagctctaac ttccctaatc cacctgctac taaaccatcg gttccttcta accctctcag
     4141 cccccaaaca ggacgatctg ctccctctgc ctccctcatc ccctctgtct ctaatggctc
     4201 cttgaagttt cagagcccca ctcatacagg taaaggtcac catctctcat tctcactgca
     4261 gactcagaat ggccgagcag cccctccttc cttctcctcc tccctgcccc cccctgcctc
     4321 cccagcttca ctgaatcaag gtgccaagag catcagaacc atccatactc ctagcctcac
     4381 cagctacaag gcacagagcg gaagttcaag caaagccacc cagtccacag caaaggaaac
     4441 ctcttaaagg ccaaatccta ttaggcacga gtcggagttg catttaagaa caaaaaaatt
     4501 tttaacagtc ttcgacaagt gttttcacaa gagaatgtaa catatcgctg tactgtttga
     4561 ggtttaatgc taagtatgtg ctaaatactg gattaataga tttcagtaaa gcttgtttgt
     4621 ttttttactt tgtcgctgtt atcattacat agtgtttact gtctctattc aatacctgtt
     4681 caatgaagta agcatgtgtt accaaaagag agtatggcag gagagaaggg tgtggtgaga
     4741 caagaaaaaa atgtatgaag catgtaaaac atgtatgatt ccagaatttt agtatgtttt
     4801 gtataaaaat atttttcatt acggagacta gacgtgaaca gagaaataca caagtgtgac
     4861 tatacaaatt gtaaaacaga tactataata tttcctttta ttttagtgtt atttagcttt
     4921 attacagatt tctatttttg tcaaaacttc atggttcctt tcgagatctt ttttgccaaa
     4981 acattttgat actgtagcat tgtacatttg aaagtagcgt gctagacaat aagccaatga
     5041 acttctacac aagccaacgc agaggcacat gtagaaggca atgatcaacc ctactgcact
     5101 gccatgaaaa ttatgtataa taatttgccg gcccaagcaa gctagttttg ttctgtttct
     5161 ttcttttttc tcttttctaa catattggga ttctctggtt gttttctttg cagtatctaa
     5221 atccttcctt tgttttctga gacctggtaa cccacacgat tgcattgtgg attttagaat
     5281 gtacacttct gtacggttct gtaaactgac caatttttgt aaatatataa atagaccaaa
     5341 aatactgtat gtgacagcac atagagtagc tttcccacac caaagttaat ttttatgcat
     5401 gctttaaaaa tatatcttgg gatgggcaga aatggaactt cctggacatt tttaaaaagc
     5461 aacaagtttg cacagctaga gtgtttttgt aaataaatgt atttgtataa cacagttatg
     5521 taatatacag aactataagc agagactttg caaaactaaa taaagggctg catgcttatt
     5581 attttttgta
//
LOCUS       XM_032621045            5515 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X13, mRNA.
ACCESSION   XM_032621045
VERSION     XM_032621045.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5515
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..5515
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 10 long SRA reads, 4
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             344..4372
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X11"
                     /protein_id="XP_032476936.1"
                     /db_xref="GeneID:116748129"
                     /translation="MEENESQKCEPCLPYSADSRQMQEQGKSNSQVASLEDAECRRTK
                     ERLSNGNSRVSASKSSRNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYP
                     HHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPF
                     SRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAF
                     PQQLTMKMLESPSVAIYIKDESRNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKT
                     VNGDVRMQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGG
                     TRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGF
                     YADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSL
                     YRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSR
                     QAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRETSEKMMKT
                     AANKNHTDGAGTPQVSGGKPLGALESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQ
                     LQQMRQLQLQNQELLRALMRKAEQEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHE
                     EEKVVRKLCDLEDFVEDLKKDSALASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTL
                     QNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAP
                     AAQYVVMEKATAAEVLKAQEEAPRASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVI
                     QPSQLSSALLNPAQHLPGGPGPHPASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEI
                     HSVSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPAS
                     GPQPKGDAPVDKLEPSEDSPNSEQDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGD
                     VVYTSRKENATTKASSEDAGPSLQARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEE
                     GDKIMAELQAFQKCSFMDVNSNSHAEQSRADSHLKDTRPGATALPKEKKGPTGTPQTS
                     RMPIPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPTFPSLPASKIPA
                     LSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSL
                     KFQSPTHTGKGHHLSFSLQTQNGRAAPPSFSSSLPPPASPASLNQGAKSIRTIHTPSL
                     TSYKAQSGSSSKATQSTAKETS"
     misc_feature    905..>1141
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 gggcaggaga gcgcatcacc tgttggggcc tacgggagcg cgcggcgcgg ggctggcctg
       61 ggcacagccc gcgttcctcg ggggcccggc ccgcgggcgg gcggacagac ggacggacgc
      121 ggggacgcgt gcgcgggggg acgccggagg cccggcgctg gaatgcagtt ttccccggcg
      181 agagagactt tgtaccggag tggagagtag tttggggtgg ggtttcgcac cgttccctcc
      241 tccccacccc cgggccccct tccaggcgct ttctgggagc tttttcagaa ctgcgctctg
      301 aagtttaaag atcagcgaag ggcctgggcc gtaggcaggg acaatggaag aaaatgaaag
      361 ccagaaatgt gagccgtgcc ttccttactc agcagacagc agacagatgc aggaacaagg
      421 aaagagcaat tcgcaggtag catccttaga agatgcagaa tgtcgcagaa ccaaggaacg
      481 cctttctaat ggaaacagtc gcgtttcagc ttccaaatct tcccgaaaca tcccaaggag
      541 acacactcta ggtggacctc gaagttccaa agaaatactg ggaatgcaaa catcagagat
      601 ggatcgtaag agagaagctt tcctagaaca tctaaagcag aaataccccc atcatgccac
      661 agccatcatg ggccaccaag agaggctgag agaccagaca agaagcccca aactgtctca
      721 cagtcctcag cctcccaact tgggtgaccc agtagagcat ttatcagagg catctggaga
      781 ttctttggaa gccatgtctg agggagaaac tccaagtcct ttttccagag gcagccggac
      841 tcgagcgagc cttccagtgg tgaggtcgac caaccagacg aaagaaagat ctctgggggt
      901 tctttatctc cagtacggag atgaaaccaa gcagctcagg atgccgaatg aaattacaag
      961 tgcagacaca atccgtgctc tcttcgtaag tgcctttcca cagcagctca ccatgaaaat
     1021 gctggagtcg cccagtgtcg ccatttacat caaagatgaa agcagaaatg tctattatga
     1081 gttaagtgat gtcaggaaca ttcaggacag atcccttctc aaagtgtaca acaaggatcc
     1141 tgcccatgca ttcaaccaca caccgaaaac tgtgaacgga gacgtgagga tgcagagaga
     1201 aatcgtttat gcaagaggag atggccctgg tgcctctcga cctggaccca caactcttct
     1261 accccacgcc attccaaatt ctccaccgtc cactcctgtg ccacattcca tgcctccctc
     1321 tccatccaga atcccttacg gaggcacccg gccgatggtc gttcctggta acgccaccat
     1381 ccccagggac agactctcca gcctgccggt ctccagatcc atctctccca gccccagcgc
     1441 catcttggaa agaagagacg tgaagccaga tgaagacatg agctccaaga gcctcgcgat
     1501 gtaccgaaac gagggtttct acgccgatcc ttacctttat cacgagggga ggatgagcat
     1561 agcctcttcg cacggcgggc acccactgga tctccccgac cacatcatcg ggtatcaccg
     1621 cgctgcagtt cgttcagcca gtgcttactg cagcccttct ttgcaagcgg aaatgcacat
     1681 ggagcagtca ctgtacagac agaagtcaag gaagtatcca gagagcctct tgcctactct
     1741 gggctccaaa acgcccccgg cctctcctca ccgagtcagt gacctgagga tggtggagat
     1801 gcacggtctc cataacgccc acgggccctc ccacaccatg cagccagacc gggtctcacc
     1861 cagccgccag gccttcaaaa aggagcccgg caccttggtg tacattgaga agccacggac
     1921 gactccagga ttagccggaa tggtggacct cggccctcct ctagttgaga agcaagtgtt
     1981 tgcttatagc acggctacga tacccaaaga cagagagacc agcgagaaaa tgatgaaaac
     2041 cgcagccaat aagaaccaca cagatggtgc aggaactccc caggtttccg gcgggaagcc
     2101 tcttggcgcc ctggagtcct cggggccacg cagccagctc ccgcctgctg gcacctccgc
     2161 cgcccacatg agcctgctcg acatgaagag gagtgtggcc gaactcaggc tccagctgca
     2221 gcagatgcga cagctccagc tgcagaacca ggagctgctg agggcgctga tgaggaaggc
     2281 tgagcaggaa atcaacagca aggtgattga aacgttgaag agactggagg accctgtgca
     2341 gcgacagcgg gtcctggtgg aacaggagag gcagaagtac ctgcacgagg aggaaaaggt
     2401 tgtccggaag ttgtgtgacc tggaagactt cgttgaagat ttaaagaagg actctgcctt
     2461 ggccagccgc gtggttactc taaaagatgt ggaagacggg gctttcctcc tgcaccaggt
     2521 gggagaggca gtagcttccc tgaaaggaga atttccaacc ttacaaaaca agatgcgagc
     2581 catcctgcgc atagaagtgg aggccgtgcg gtttctgaag gaggagccgc acaggctgga
     2641 cagtctccta cagagagtgc gtggcatgac cgacgccctg accacgctgc gcaggcatgt
     2701 cactgatggg ctcttgaagg gcacagatgc ggccccggcc gcacagtatg tcgtgatgga
     2761 aaaggccacg gccgcagaag tcctgaaggc ccaggaggag gctccccgcg cctcgggcca
     2821 gcccctcccc ggtgcgggcg tccccggcga cgtgaaatcg gaagtggtac ccttgacggt
     2881 tcaccacgct cagagctctc ctgtggtcat ccagccgtcc cagctctcct ccgcgctgct
     2941 gaaccctgcc cagcacttgc caggggggcc cgggcctcac ccggccagcc ctcccgctgt
     3001 cacacaggag gtgacctcag ctctgcagtc cccgcagatg cccgggaatg gttcctccat
     3061 gcagagcctg ttcatggacg aaatccacag tgtgagtgcc aagaacaggg cagtgtctat
     3121 cgagaaagca gaaaggaaat gggaagagaa aaggcaaaat ctggaccact ataacggaaa
     3181 agagtttgag aagctcctag aagaagccca ggccaatatt atgaagtcaa ttccaaacct
     3241 ggagatgccg ccagcctcgg gcccacagcc aaagggcgat gctccagtgg acaagctaga
     3301 accttcagaa gactctccaa attcagaaca ggacttggac aagctggggg ctaagtcccc
     3361 gcctcgtcct cccccacctc cacggaggag ctatctgcca ggatcggggc tcaccaccac
     3421 gaggtccggc gatgtggtct acaccagcag gaaggagaat gccaccacaa aggcaagcag
     3481 tgaagatgct ggaccaagcc tgcaggctag agccacaaag tgtccagcag aggagcctgc
     3541 ttcagcctgg gccccgtcac caccacctgt cactacttcc tccttcaagg atgaggagga
     3601 agaagaagga gacaaaatca tggcagaact ccaggcattc cagaagtgtt cctttatgga
     3661 tgtaaattca aacagtcacg ctgagcagtc ccgggctgac agtcacctta aagacactag
     3721 gccgggggcc acagccctcc ccaaggagaa gaagggcccc acgggaaccc ctcagacgag
     3781 caggatgccg atccccatga gttccaagaa cagacccgga agcctggaca aacctggcaa
     3841 gcagtccaaa ctgcaggacc cccgccaata tcgtcaggct aatggaagtg ctaagaaagc
     3901 tggtggggac tgtaagccta ctttcccctc cttacctgct tctaagattc cagccctttc
     3961 tcccagctct gggaaaagca gttctctgcc ttcttctagt ggtgacagct ctaacttccc
     4021 taatccacct gctactaaac catcggttcc ttctaaccct ctcagccccc aaacaggacg
     4081 atctgctccc tctgcctccc tcatcccctc tgtctctaat ggctccttga agtttcagag
     4141 ccccactcat acaggtaaag gtcaccatct ctcattctca ctgcagactc agaatggccg
     4201 agcagcccct ccttccttct cctcctccct gcccccccct gcctccccag cttcactgaa
     4261 tcaaggtgcc aagagcatca gaaccatcca tactcctagc ctcaccagct acaaggcaca
     4321 gagcggaagt tcaagcaaag ccacccagtc cacagcaaag gaaacctctt aaaggccaaa
     4381 tcctattagg cacgagtcgg agttgcattt aagaacaaaa aaatttttaa cagtcttcga
     4441 caagtgtttt cacaagagaa tgtaacatat cgctgtactg tttgaggttt aatgctaagt
     4501 atgtgctaaa tactggatta atagatttca gtaaagcttg tttgtttttt tactttgtcg
     4561 ctgttatcat tacatagtgt ttactgtctc tattcaatac ctgttcaatg aagtaagcat
     4621 gtgttaccaa aagagagtat ggcaggagag aagggtgtgg tgagacaaga aaaaaatgta
     4681 tgaagcatgt aaaacatgta tgattccaga attttagtat gttttgtata aaaatatttt
     4741 tcattacgga gactagacgt gaacagagaa atacacaagt gtgactatac aaattgtaaa
     4801 acagatacta taatatttcc ttttatttta gtgttattta gctttattac agatttctat
     4861 ttttgtcaaa acttcatggt tcctttcgag atcttttttg ccaaaacatt ttgatactgt
     4921 agcattgtac atttgaaagt agcgtgctag acaataagcc aatgaacttc tacacaagcc
     4981 aacgcagagg cacatgtaga aggcaatgat caaccctact gcactgccat gaaaattatg
     5041 tataataatt tgccggccca agcaagctag ttttgttctg tttctttctt ttttctcttt
     5101 tctaacatat tgggattctc tggttgtttt ctttgcagta tctaaatcct tcctttgttt
     5161 tctgagacct ggtaacccac acgattgcat tgtggatttt agaatgtaca cttctgtacg
     5221 gttctgtaaa ctgaccaatt tttgtaaata tataaataga ccaaaaatac tgtatgtgac
     5281 agcacataga gtagctttcc cacaccaaag ttaattttta tgcatgcttt aaaaatatat
     5341 cttgggatgg gcagaaatgg aacttcctgg acatttttaa aaagcaacaa gtttgcacag
     5401 ctagagtgtt tttgtaaata aatgtatttg tataacacag ttatgtaata tacagaacta
     5461 taagcagaga ctttgcaaaa ctaaataaag ggctgcatgc ttattatttt ttgta
//
LOCUS       XM_032621046            4014 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X14, mRNA.
ACCESSION   XM_032621046
VERSION     XM_032621046.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4014
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4014
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116748129"
     CDS             1..4014
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X12"
                     /protein_id="XP_032476937.1"
                     /db_xref="GeneID:116748129"
                     /translation="MEENESQKCEPCLPYSADSRQMQEQGKSNSQVASLEDAECRRTK
                     ERLSNGNSRVSASKSSRNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYP
                     HHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPF
                     SRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAF
                     PQQLTMKMLESPSVAIYIKDESRNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKT
                     VNGDVRMQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGG
                     TRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGF
                     YADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSL
                     YRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSR
                     QAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRETRERMQAM
                     EKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTAANKNHTDGAGTPQVSGGKPLGA
                     LESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQLQQMRQLQLQNQELLRALMRKAE
                     QEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHEEEKVVRKLCDLEDFVEDLKKDSA
                     LASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPH
                     RLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAPAAQYVVMEKATAAEVLKAQEEAP
                     RASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGPGPH
                     PASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEIHSVSAKNRAVSIEKAERKWEEKR
                     QNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPQPKGDAPVDKLEPSEDSPNSE
                     QDLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDVVYTSRKENATTKASSEDAGPSL
                     QARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEGDKIMAELQGPTGTPQTSRMPIP
                     MSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPTFPSLPASKIPALSPSS
                     GKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSP
                     THTGKGHHLSFSLQTQNGRAAPPSFSSSLPPPASPASLNQGAKSIRTIHTPSLTSYKA
                     QSGSSSKATQSTAKETS"
     misc_feature    562..>798
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 atggaagaaa atgaaagcca gaaatgtgag ccgtgccttc cttactcagc agacagcaga
       61 cagatgcagg aacaaggaaa gagcaattcg caggtagcat ccttagaaga tgcagaatgt
      121 cgcagaacca aggaacgcct ttctaatgga aacagtcgcg tttcagcttc caaatcttcc
      181 cgaaacatcc caaggagaca cactctaggt ggacctcgaa gttccaaaga aatactggga
      241 atgcaaacat cagagatgga tcgtaagaga gaagctttcc tagaacatct aaagcagaaa
      301 tacccccatc atgccacagc catcatgggc caccaagaga ggctgagaga ccagacaaga
      361 agccccaaac tgtctcacag tcctcagcct cccaacttgg gtgacccagt agagcattta
      421 tcagaggcat ctggagattc tttggaagcc atgtctgagg gagaaactcc aagtcctttt
      481 tccagaggca gccggactcg agcgagcctt ccagtggtga ggtcgaccaa ccagacgaaa
      541 gaaagatctc tgggggttct ttatctccag tacggagatg aaaccaagca gctcaggatg
      601 ccgaatgaaa ttacaagtgc agacacaatc cgtgctctct tcgtaagtgc ctttccacag
      661 cagctcacca tgaaaatgct ggagtcgccc agtgtcgcca tttacatcaa agatgaaagc
      721 agaaatgtct attatgagtt aagtgatgtc aggaacattc aggacagatc ccttctcaaa
      781 gtgtacaaca aggatcctgc ccatgcattc aaccacacac cgaaaactgt gaacggagac
      841 gtgaggatgc agagagaaat cgtttatgca agaggagatg gccctggtgc ctctcgacct
      901 ggacccacaa ctcttctacc ccacgccatt ccaaattctc caccgtccac tcctgtgcca
      961 cattccatgc ctccctctcc atccagaatc ccttacggag gcacccggcc gatggtcgtt
     1021 cctggtaacg ccaccatccc cagggacaga ctctccagcc tgccggtctc cagatccatc
     1081 tctcccagcc ccagcgccat cttggaaaga agagacgtga agccagatga agacatgagc
     1141 tccaagagcc tcgcgatgta ccgaaacgag ggtttctacg ccgatcctta cctttatcac
     1201 gaggggagga tgagcatagc ctcttcgcac ggcgggcacc cactggatct ccccgaccac
     1261 atcatcgggt atcaccgcgc tgcagttcgt tcagccagtg cttactgcag cccttctttg
     1321 caagcggaaa tgcacatgga gcagtcactg tacagacaga agtcaaggaa gtatccagag
     1381 agcctcttgc ctactctggg ctccaaaacg cccccggcct ctcctcaccg agtcagtgac
     1441 ctgaggatgg tggagatgca cggtctccat aacgcccacg ggccctccca caccatgcag
     1501 ccagaccggg tctcacccag ccgccaggcc ttcaaaaagg agcccggcac cttggtgtac
     1561 attgagaagc cacggacgac tccaggatta gccggaatgg tggacctcgg ccctcctcta
     1621 gttgagaagc aagtgtttgc ttatagcacg gctacgatac ccaaagacag agagaccaga
     1681 gagaggatgc aagccatgga gaaacagatt gccagtttaa ctggccttgt tcagtctgcg
     1741 ctttttaaag ggccccttac aagtaatagc aaagatgcat ctagcgagaa aatgatgaaa
     1801 accgcagcca ataagaacca cacagatggt gcaggaactc cccaggtttc cggcgggaag
     1861 cctcttggcg ccctggagtc ctcggggcca cgcagccagc tcccgcctgc tggcacctcc
     1921 gccgcccaca tgagcctgct cgacatgaag aggagtgtgg ccgaactcag gctccagctg
     1981 cagcagatgc gacagctcca gctgcagaac caggagctgc tgagggcgct gatgaggaag
     2041 gctgagcagg aaatcaacag caaggtgatt gaaacgttga agagactgga ggaccctgtg
     2101 cagcgacagc gggtcctggt ggaacaggag aggcagaagt acctgcacga ggaggaaaag
     2161 gttgtccgga agttgtgtga cctggaagac ttcgttgaag atttaaagaa ggactctgcc
     2221 ttggccagcc gcgtggttac tctaaaagat gtggaagacg gggctttcct cctgcaccag
     2281 gtgggagagg cagtagcttc cctgaaagga gaatttccaa ccttacaaaa caagatgcga
     2341 gccatcctgc gcatagaagt ggaggccgtg cggtttctga aggaggagcc gcacaggctg
     2401 gacagtctcc tacagagagt gcgtggcatg accgacgccc tgaccacgct gcgcaggcat
     2461 gtcactgatg ggctcttgaa gggcacagat gcggccccgg ccgcacagta tgtcgtgatg
     2521 gaaaaggcca cggccgcaga agtcctgaag gcccaggagg aggctccccg cgcctcgggc
     2581 cagcccctcc ccggtgcggg cgtccccggc gacgtgaaat cggaagtggt acccttgacg
     2641 gttcaccacg ctcagagctc tcctgtggtc atccagccgt cccagctctc ctccgcgctg
     2701 ctgaaccctg cccagcactt gccagggggg cccgggcctc acccggccag ccctcccgct
     2761 gtcacacagg aggtgacctc agctctgcag tccccgcaga tgcccgggaa tggttcctcc
     2821 atgcagagcc tgttcatgga cgaaatccac agtgtgagtg ccaagaacag ggcagtgtct
     2881 atcgagaaag cagaaaggaa atgggaagag aaaaggcaaa atctggacca ctataacgga
     2941 aaagagtttg agaagctcct agaagaagcc caggccaata ttatgaagtc aattccaaac
     3001 ctggagatgc cgccagcctc gggcccacag ccaaagggcg atgctccagt ggacaagcta
     3061 gaaccttcag aagactctcc aaattcagaa caggacttgg acaagctggg ggctaagtcc
     3121 ccgcctcgtc ctcccccacc tccacggagg agctatctgc caggatcggg gctcaccacc
     3181 acgaggtccg gcgatgtggt ctacaccagc aggaaggaga atgccaccac aaaggcaagc
     3241 agtgaagatg ctggaccaag cctgcaggct agagccacaa agtgtccagc agaggagcct
     3301 gcttcagcct gggccccgtc accaccacct gtcactactt cctccttcaa ggatgaggag
     3361 gaagaagaag gagacaaaat catggcagaa ctccagggcc ccacgggaac ccctcagacg
     3421 agcaggatgc cgatccccat gagttccaag aacagacccg gaagcctgga caaacctggc
     3481 aagcagtcca aactgcagga cccccgccaa tatcgtcagg ctaatggaag tgctaagaaa
     3541 gctggtgggg actgtaagcc tactttcccc tccttacctg cttctaagat tccagccctt
     3601 tctcccagct ctgggaaaag cagttctctg ccttcttcta gtggtgacag ctctaacttc
     3661 cctaatccac ctgctactaa accatcggtt ccttctaacc ctctcagccc ccaaacagga
     3721 cgatctgctc cctctgcctc cctcatcccc tctgtctcta atggctcctt gaagtttcag
     3781 agccccactc atacaggtaa aggtcaccat ctctcattct cactgcagac tcagaatggc
     3841 cgagcagccc ctccttcctt ctcctcctcc ctgccccccc ctgcctcccc agcttcactg
     3901 aatcaaggtg ccaagagcat cagaaccatc catactccta gcctcaccag ctacaaggca
     3961 cagagcggaa gttcaagcaa agccacccag tccacagcaa aggaaacctc ttaa
//
LOCUS       XM_032621047            4184 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X15, mRNA.
ACCESSION   XM_032621047
VERSION     XM_032621047.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4184
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..4184
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116748129"
     CDS             174..4184
                     /gene="KIAA1217"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X13"
                     /protein_id="XP_032476938.1"
                     /db_xref="GeneID:116748129"
                     /translation="MEENESQKCEPCLPYSADSRQMQEQGKSNSQVASLEDAECRRTK
                     ERLSNGNSRVSASKSSRNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYP
                     HHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGETPSPF
                     SRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAF
                     PQQLTMKMLESPSVAIYIKDESRNVYYELSDVRNIQDRSLLKVYNKDPAHAFNHTPKT
                     VNGDVRMQREIVYARGDGPGASRPGPTTLLPHAIPNSPPSTPVPHSMPPSPSRIPYGG
                     TRPMVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKSLAMYRNEGF
                     YADPYLYHEGRMSIASSHGGHPLDLPDHIIGYHRAAVRSASAYCSPSLQAEMHMEQSL
                     YRQKSRKYPESLLPTLGSKTPPASPHRVSDLRMVEMHGLHNAHGPSHTMQPDRVSPSR
                     QAFKKEPGTLVYIEKPRTTPGLAGMVDLGPPLVEKQVFAYSTATIPKDRETRERMQAM
                     EKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTAANKNHTDGAGTPQVSGGKPLGA
                     LESSGPRSQLPPAGTSAAHMSLLDMKRSVAELRLQLQQMRQLQLQNQELLRALMRKAE
                     QEINSKVIETLKRLEDPVQRQRVLVEQERQKYLHEEEKVVRKLCDLEDFVEDLKKDSA
                     LASRVVTLKDVEDGAFLLHQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPH
                     RLDSLLQRVRGMTDALTTLRRHVTDGLLKGTDAAPAAQYVVMEKATAAEVLKAQEEAP
                     RASGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGPGPH
                     PASPPAVTQEVTSALQSPQMPGNGSSMQSLFMDEIHSVSAKNRAVSIEKAERKWEEKR
                     QNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPQPKGDAPVDKLEPSDSPNSEQ
                     DLDKLGAKSPPRPPPPPRRSYLPGSGLTTTRSGDVVYTSRKENATTKASSEDAGPSLQ
                     ARATKCPAEEPASAWAPSPPPVTTSSFKDEEEEEGDKIMAELQGPTGTPQTSRMPIPM
                     SSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPTFPSLPASKIPALSPSSG
                     KSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPT
                     HTGKGHHLSFSLQTQNGRAAPPSFSSSLPPPASPASLNQGAKSIRTIHTPSLTSYKAQ
                     SGSSSKATQSTAKETS"
     misc_feature    735..>971
                     /gene="KIAA1217"
                     /note="Actin interacting protein 3; Region: AIP3;
                     pfam03915"
                     /db_xref="CDD:427585"
ORIGIN      
        1 ttccccggcg agagagactt tgtaccggag tggagagtag tttggggtgg ggtttcgcac
       61 cgttccctcc tccccacccc cgggccccct tccaggcgct ttctgggagc tttttcagaa
      121 ctgcgctctg aagtttaaag atcagcgaag ggcctgggcc gtaggcaggg acaatggaag
      181 aaaatgaaag ccagaaatgt gagccgtgcc ttccttactc agcagacagc agacagatgc
      241 aggaacaagg aaagagcaat tcgcaggtag catccttaga agatgcagaa tgtcgcagaa
      301 ccaaggaacg cctttctaat ggaaacagtc gcgtttcagc ttccaaatct tcccgaaaca
      361 tcccaaggag acacactcta ggtggacctc gaagttccaa agaaatactg ggaatgcaaa
      421 catcagagat ggatcgtaag agagaagctt tcctagaaca tctaaagcag aaataccccc
      481 atcatgccac agccatcatg ggccaccaag agaggctgag agaccagaca agaagcccca
      541 aactgtctca cagtcctcag cctcccaact tgggtgaccc agtagagcat ttatcagagg
      601 catctggaga ttctttggaa gccatgtctg agggagaaac tccaagtcct ttttccagag
      661 gcagccggac tcgagcgagc cttccagtgg tgaggtcgac caaccagacg aaagaaagat
      721 ctctgggggt tctttatctc cagtacggag atgaaaccaa gcagctcagg atgccgaatg
      781 aaattacaag tgcagacaca atccgtgctc tcttcgtaag tgcctttcca cagcagctca
      841 ccatgaaaat gctggagtcg cccagtgtcg ccatttacat caaagatgaa agcagaaatg
      901 tctattatga gttaagtgat gtcaggaaca ttcaggacag atcccttctc aaagtgtaca
      961 acaaggatcc tgcccatgca ttcaaccaca caccgaaaac tgtgaacgga gacgtgagga
     1021 tgcagagaga aatcgtttat gcaagaggag atggccctgg tgcctctcga cctggaccca
     1081 caactcttct accccacgcc attccaaatt ctccaccgtc cactcctgtg ccacattcca
     1141 tgcctccctc tccatccaga atcccttacg gaggcacccg gccgatggtc gttcctggta
     1201 acgccaccat ccccagggac agactctcca gcctgccggt ctccagatcc atctctccca
     1261 gccccagcgc catcttggaa agaagagacg tgaagccaga tgaagacatg agctccaaga
     1321 gcctcgcgat gtaccgaaac gagggtttct acgccgatcc ttacctttat cacgagggga
     1381 ggatgagcat agcctcttcg cacggcgggc acccactgga tctccccgac cacatcatcg
     1441 ggtatcaccg cgctgcagtt cgttcagcca gtgcttactg cagcccttct ttgcaagcgg
     1501 aaatgcacat ggagcagtca ctgtacagac agaagtcaag gaagtatcca gagagcctct
     1561 tgcctactct gggctccaaa acgcccccgg cctctcctca ccgagtcagt gacctgagga
     1621 tggtggagat gcacggtctc cataacgccc acgggccctc ccacaccatg cagccagacc
     1681 gggtctcacc cagccgccag gccttcaaaa aggagcccgg caccttggtg tacattgaga
     1741 agccacggac gactccagga ttagccggaa tggtggacct cggccctcct ctagttgaga
     1801 agcaagtgtt tgcttatagc acggctacga tacccaaaga cagagagacc agagagagga
     1861 tgcaagccat ggagaaacag attgccagtt taactggcct tgttcagtct gcgcttttta
     1921 aagggcccct tacaagtaat agcaaagatg catctagcga gaaaatgatg aaaaccgcag
     1981 ccaataagaa ccacacagat ggtgcaggaa ctccccaggt ttccggcggg aagcctcttg
     2041 gcgccctgga gtcctcgggg ccacgcagcc agctcccgcc tgctggcacc tccgccgccc
     2101 acatgagcct gctcgacatg aagaggagtg tggccgaact caggctccag ctgcagcaga
     2161 tgcgacagct ccagctgcag aaccaggagc tgctgagggc gctgatgagg aaggctgagc
     2221 aggaaatcaa cagcaaggtg attgaaacgt tgaagagact ggaggaccct gtgcagcgac
     2281 agcgggtcct ggtggaacag gagaggcaga agtacctgca cgaggaggaa aaggttgtcc
     2341 ggaagttgtg tgacctggaa gacttcgttg aagatttaaa gaaggactct gccttggcca
     2401 gccgcgtggt tactctaaaa gatgtggaag acggggcttt cctcctgcac caggtgggag
     2461 aggcagtagc ttccctgaaa ggagaatttc caaccttaca aaacaagatg cgagccatcc
     2521 tgcgcataga agtggaggcc gtgcggtttc tgaaggagga gccgcacagg ctggacagtc
     2581 tcctacagag agtgcgtggc atgaccgacg ccctgaccac gctgcgcagg catgtcactg
     2641 atgggctctt gaagggcaca gatgcggccc cggccgcaca gtatgtcgtg atggaaaagg
     2701 ccacggccgc agaagtcctg aaggcccagg aggaggctcc ccgcgcctcg ggccagcccc
     2761 tccccggtgc gggcgtcccc ggcgacgtga aatcggaagt ggtacccttg acggttcacc
     2821 acgctcagag ctctcctgtg gtcatccagc cgtcccagct ctcctccgcg ctgctgaacc
     2881 ctgcccagca cttgccaggg gggcccgggc ctcacccggc cagccctccc gctgtcacac
     2941 aggaggtgac ctcagctctg cagtccccgc agatgcccgg gaatggttcc tccatgcaga
     3001 gcctgttcat ggacgaaatc cacagtgtga gtgccaagaa cagggcagtg tctatcgaga
     3061 aagcagaaag gaaatgggaa gagaaaaggc aaaatctgga ccactataac ggaaaagagt
     3121 ttgagaagct cctagaagaa gcccaggcca atattatgaa gtcaattcca aacctggaga
     3181 tgccgccagc ctcgggccca cagccaaagg gcgatgctcc agtggacaag ctagaacctt
     3241 cagactctcc aaattcagaa caggacttgg acaagctggg ggctaagtcc ccgcctcgtc
     3301 ctcccccacc tccacggagg agctatctgc caggatcggg gctcaccacc acgaggtccg
     3361 gcgatgtggt ctacaccagc aggaaggaga atgccaccac aaaggcaagc agtgaagatg
     3421 ctggaccaag cctgcaggct agagccacaa agtgtccagc agaggagcct gcttcagcct
     3481 gggccccgtc accaccacct gtcactactt cctccttcaa ggatgaggag gaagaagaag
     3541 gagacaaaat catggcagaa ctccagggcc ccacgggaac ccctcagacg agcaggatgc
     3601 cgatccccat gagttccaag aacagacccg gaagcctgga caaacctggc aagcagtcca
     3661 aactgcagga cccccgccaa tatcgtcagg ctaatggaag tgctaagaaa gctggtgggg
     3721 actgtaagcc tactttcccc tccttacctg cttctaagat tccagccctt tctcccagct
     3781 ctgggaaaag cagttctctg ccttcttcta gtggtgacag ctctaacttc cctaatccac
     3841 ctgctactaa accatcggtt ccttctaacc ctctcagccc ccaaacagga cgatctgctc
     3901 cctctgcctc cctcatcccc tctgtctcta atggctcctt gaagtttcag agccccactc
     3961 atacaggtaa aggtcaccat ctctcattct cactgcagac tcagaatggc cgagcagccc
     4021 ctccttcctt ctcctcctcc ctgccccccc ctgcctcccc agcttcactg aatcaaggtg
     4081 ccaagagcat cagaaccatc catactccta gcctcaccag ctacaaggca cagagcggaa
     4141 gttcaagcaa agccacccag tccacagcaa aggaaacctc ttaa
//
LOCUS       XM_032621048            6135 bp    mRNA    linear   MAM 27-FEB-2020
DEFINITION  PREDICTED: Phocoena sinus KIAA1217 ortholog (KIAA1217), transcript
            variant X16, mRNA.
ACCESSION   XM_032621048
VERSION     XM_032621048.1
DBLINK      BioProject: PRJNA606521
KEYWORDS    RefSeq.
SOURCE      Phocoena sinus (vaquita)
  ORGANISM  Phocoena sinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045764.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phocoena sinus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6135
                     /organism="Phocoena sinus"
                     /mol_type="mRNA"
                     /isolate="mPhoSin1"
                     /db_xref="taxon:42100"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="Cultured fibroblasts (kidney)"
                     /geo_loc_name="Mexico: San Felipe, Baja California"
                     /lat_lon="31.103595 N 114.679383 W"
                     /collection_date="04-Nov-2017"
                     /collected_by="Frances Gulland"
     gene            1..6135
                     /gene="KIAA1217"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
              